
#NAME
ENCFF075XTM_SDAD1_CDS_m3_run1.txt

#BEAR
e[ddddyyyyyyyyyyyyyyyydddd	chr6:7562787-7563016(+)$1	229	137	163	21.1070
iiiiiivvvvvvvvvvvvviiiiiii	chr2:70457787-70458068(-)$1	281	3	29	23.5064
iiiiiiitttttttttttiiiiiiii	chr6:31962199-31962520(+)$1	321	200	226	21.7460
####bbvvvvvvvvvvvvvbb333bb	chr2:216248669-216248927(-)$1	258	216	242	22.4829
b[ddddwwwwwwwwwwwwwwddddbb	chr8:134256497-134256734(-)$1	237	146	172	21.7641
!eeeeettttttttttteeeee]bb]	chrX:70793400-70793694(+)$1	294	208	234	21.1919
eee[bbwwwwwwwwwwwwwwbb]eee	chr3:186334887-186335097(+)$1	210	129	155	22.5979
ee[cccuuuuuuuuuuuuccceeeee	chr2:216283878-216284159(-)$1	281	251	277	23.3907
=======ttttttttttt========	chr2:216271749-216271993(-)$1	244	202	228	22.3326
!!bbxxxxxxxxxxxxxxxbb22ccc	chrX:132887430-132887643(-)$1	213	68	94	17.6697
:eeeeeuuuuuuuuuuuueeeee:FF	chr12:9227184-9227421(-)$1	237	86	112	20.5230
hhhhhhwwwwwwwwwwwwwwhhhhhh	chr2:216269141-216269440(-)$1	299	63	89	20.5911
ggg[bbvvvvvvvvvvvvvbbggggg	chr2:21252680-21252936(-)$1	256	146	172	23.3938
d[cccxxxxxxxxxxxxxxxcccddd	chr12:57574081-57574356(+)$1	275	86	112	18.7055
ffffffuuuuuuuuuuuuffffff]d	chr19:45412205-45412464(+)$1	259	203	229	22.6615
gggggguuuuuuuuuuuuggggggg]	chr1:19446700-19446942(-)$1	242	49	75	23.5537
iii[bbvvvvvvvvvvvvvbb]iiii	chrX:18954138-18954368(-)$1	230	98	124	23.3922
ccc[bbtttttttttttbb]cccddd	chr2:54876128-54876390(+)$1	262	195	221	21.0195
ffffffwwwwwwwwwwwwwwffffff	chr1:19474403-19474671(-)$1	268	218	244	22.0565
##dddduuuuuuuuuuuudddd333c	chr6:168366379-168366658(+)$1	279	211	237	22.9288
iii[bbwwwwwwwwwwwwwwbb]iii	chr17:62500006-62500334(-)$1	328	85	111	23.0164
ffffffvvvvvvvvvvvvvffffffE	chr17:79817090-79817364(-)$1	274	80	106	21.6608
c[dddduuuuuuuuuuuudddd]ccc	chr20:17600906-17601114(-)$1	208	117	143	23.0948
!!dddduuuuuuuuuuuudddd333c	chr19:6719122-6719332(-)$1	210	15	41	23.1965
ceeeeevvvvvvvvvvvvveeeee::	chr6:144832070-144832326(+)$1	256	153	179	21.3745
f[ayyyyyyyyyyyyyyyyaffffff	chr3:133473234-133473515(+)$1	281	111	137	21.1458
fffffftttttttttttffffffggg	chr12:9246040-9246254(-)$1	214	27	53	20.8268
dd[cccuuuuuuuuuuuucccdddd4	chr19:6710683-6710949(-)$1	266	12	38	23.1221
gggggggtttttttttttggggggg]	chr2:54873444-54873683(+)$1	239	84	110	21.7291
!!eeeeettttttttttteeeee333	chr7:100773603-100773832(+)$1	229	36	62	21.9954
fffffftttttttttttffffffddd	chr16:30080036-30080308(+)$1	272	12	38	20.6519
$eeeeeuuuuuuuuuuuueeeee777	chr2:216299442-216299646(-)$1	204	9	35	21.4393
eee[bbwwwwwwwwwwwwwwbb]eee	chr3:186334897-186335105(+)$1	208	119	145	22.5979
ddbbyyyyyyyyyyyyyyyybb]ddd	chr4:83793037-83793294(-)$1	257	146	172	20.9402
ffffffvvvvvvvvvvvvvffffff:	chr6:144814473-144814690(+)$1	217	30	56	21.7783
d[cccwwwwwwwwwwwwwwccc]ddd	chr7:5428141-5428478(-)$1	337	5	31	22.8186
dddd[bbtttttttttttbbdddd::	chr2:44201186-44201538(-)$1	352	154	180	19.2973
:ddddbbtttttttttttbb]dddd:	chr3:186336224-186336439(+)$1	215	102	128	19.3613
=[bbxxxxxxxxxxxxxxxbb=====	chr2:216296569-216296781(-)$1	212	32	58	18.4173
:eeeee[attttttttttta]eeeee	chr2:216246834-216247037(-)$1	203	176	202	20.0219
g[cccwwwwwwwwwwwwwwccc22gg	chr11:129979360-129979597(+)$1	237	22	48	22.6425
d[cccyyyyyyyyyyyyyyyycccdd	chr1:8923192-8923459(-)$1	267	176	202	21.7806
ffffffvvvvvvvvvvvvvffffff:	chr2:216256358-216256606(-)$1	248	211	237	21.7783
[ddddbbtttttttttttbb]dddd]	chr11:129992098-129992364(+)$1	266	188	214	21.2653
!eeeeexxxxxxxxxxxxxxxeeeee	chr9:117015063-117015310(+)$1	247	181	207	18.5441
ddddbbwwwwwwwwwwwwwwbb]ddd	chr2:216297959-216298229(-)$1	270	154	180	22.2329
ggggggwwwwwwwwwwwwwwgggggg	chr1:55643535-55643838(-)$1	303	204	230	22.9990
eeeeeauuuuuuuuuuuua]eeeee]	chr21:46916893-46917106(+)$1	213	48	74	23.6499
"eeeeeuuuuuuuuuuuueeeee333	chr16:30079865-30080122(+)$1	257	77	103	23.4793
iiiiiiitttttttttttiiiiiiii	chr10:101591267-101591502(+)$1	235	44	70	21.7460
======uuuuuuuuuuuu========	chr10:7785947-7786161(+)$1	214	164	190	24.0902

#otherMatches

#Seq PSSM
CAGUGGAGCAGCACAUUAACAGCCAC	chr6:7562787-7563016(+)$1	229	137	163	21.1070
AAGAUUUUUUUUUUUACAUAAUUUUA	chr2:70457787-70458068(-)$1	281	3	29	23.5064
CGCCGCUGUGUCUCUGAAGGUGGUGG	chr6:31962199-31962520(+)$1	321	200	226	21.7460
UUUUACUUAUUCAGAUACUGUUUUGC	chr2:216248669-216248927(-)$1	258	216	242	22.4829
AUGUUGGCUUUUGCAUUAUACAGCUG	chr8:134256497-134256734(-)$1	237	146	172	21.7641
AUGAUUAAGCCUGUUGAAGUCACUGA	chrX:70793400-70793694(+)$1	294	208	234	21.1919
CUGCUGGCCCCGCUGAACGACACCAG	chr3:186334887-186335097(+)$1	210	129	155	22.5979
CAGUGAUUAUUAAUGCUCUCAUGCCU	chr2:216283878-216284159(-)$1	281	251	277	23.3907
GGUUGUUUUGUCUCUGUCAACAGUCC	chr2:216271749-216271993(-)$1	244	202	228	22.3326
UCUCUUUUCAACAAUCCAUGAUUCUA	chrX:132887430-132887643(-)$1	213	68	94	17.6697
GUGGGGCAUUUUUACGAACCCCAGGC	chr12:9227184-9227421(-)$1	237	86	112	20.5230
ACUGGAUGCUCCCACUAACCUCCAGU	chr2:216269141-216269440(-)$1	299	63	89	20.5911
UACACCUAUUUGAUUCUGCGGGUAAU	chr2:21252680-21252936(-)$1	256	146	172	23.3938
UACCAUCAACCGCUGCAACCUGGAUG	chr12:57574081-57574356(+)$1	275	86	112	18.7055
CUGGUGGAAGACAUGCAGCGCCAGUG	chr19:45412205-45412464(+)$1	259	203	229	22.6615
UGGAGGACUUCUUCCUACUCUUCAGC	chr1:19446700-19446942(-)$1	242	49	75	23.5537
AGGUCCAAGAAUACCGAGAGGCCCUG	chrX:18954138-18954368(-)$1	230	98	124	23.3922
CACGGCAAGUACUUGAGGCAGUGCAU	chr2:54876128-54876390(+)$1	262	195	221	21.0195
GCUGACAGGGAAUCAAAUAAGUUAGC	chr1:19474403-19474671(-)$1	268	218	244	22.0565
ccggcgccccuccucccccgccucag	chr6:168366379-168366658(+)$1	279	211	237	22.9288
UGUUACUAAUUAUAGCAAAUGUCAUG	chr17:62500006-62500334(-)$1	328	85	111	23.0164
GCAUCUCAUUUCCGCUUCCAGAUGCC	chr17:79817090-79817364(-)$1	274	80	106	21.6608
CAUCUCGAAGAGAUUGUAGAGAAGCU	chr20:17600906-17601114(-)$1	208	117	143	23.0948
ACUGUCCACGACUUCCCAGGCAAAAA	chr19:6719122-6719332(-)$1	210	15	41	23.1965
CGUACCUGGACUGAAGAUUGGUGCAA	chr6:144832070-144832326(+)$1	256	153	179	21.3745
GACUUUCUAUUAUGCUGUUGCUGUGG	chr3:133473234-133473515(+)$1	281	111	137	21.1458
AUAAGCUUUAUCUGUAUGUUUAUUGU	chr12:9246040-9246254(-)$1	214	27	53	20.8268
GACUCCUUCCCCCAUCCCGGAUCCCU	chr19:6710683-6710949(-)$1	266	12	38	23.1221
CAGCAGUACUACUUUGACGCUGCUGA	chr2:54873444-54873683(+)$1	239	84	110	21.7291
CGGCUGGGAACCCUCAAUUCAGCAUA	chr7:100773603-100773832(+)$1	229	36	62	21.9954
CGAACCCAACCAGAGCAGGUUUGGGU	chr16:30080036-30080308(+)$1	272	12	38	20.6519
AUAUGUACGUCAAUAUUCACAUGAAG	chr2:216299442-216299646(-)$1	204	9	35	21.4393
CUGCUGGCCCCGCUGAACGACACCAG	chr3:186334897-186335105(+)$1	208	119	145	22.5979
GGGAUCUUCGAUUUGCUUCCUCUCCA	chr4:83793037-83793294(-)$1	257	146	172	20.9402
UUGUCCAGAAACAGCAAACGGACAAC	chr6:144814473-144814690(+)$1	217	30	56	21.7783
CCGCGCCCCUGCCCCUCACCGCUgcc	chr7:5428141-5428478(-)$1	337	5	31	22.8186
GCGUUGCAAAUUUUACUAGCAUGCCC	chr2:44201186-44201538(-)$1	352	154	180	19.2973
CCUCCCACCUUCUACCUAUGUGGAGU	chr3:186336224-186336439(+)$1	215	102	128	19.3613
AUGAGACCAAAAAAAAAAAUCUGUUC	chr2:216296569-216296781(-)$1	212	32	58	18.4173
UCUUUUGCAAUUACACAUAGGGAAAG	chr2:216246834-216247037(-)$1	203	176	202	20.0219
UUGUGGGAAGUUAAAUAUGCAUGUGA	chr11:129979360-129979597(+)$1	237	22	48	22.6425
GCGUCUCCUCCUUUCUUCUCUGACCU	chr1:8923192-8923459(-)$1	267	176	202	21.7806
GUUGUCAAUUUCUCCUUCAGACAAUG	chr2:216256358-216256606(-)$1	248	211	237	21.7783
gguggaggaCCGAGAUUACUACUAUG	chr11:129992098-129992364(+)$1	266	188	214	21.2653
ACCACUGUCAGAUAAGGGUUAGGUgg	chr9:117015063-117015310(+)$1	247	181	207	18.5441
GCGAGGGAGAAUAAGCUGUACCAUCG	chr2:216297959-216298229(-)$1	270	154	180	22.2329
UUUUCAGACCUUagaacacaugagga	chr1:55643535-55643838(-)$1	303	204	230	22.9990
CGCCUCUCCCCGUUCCUUGCAGGUGU	chr21:46916893-46917106(+)$1	213	48	74	23.6499
AUGUUGUUACCCUGACCCCAACAGGU	chr16:30079865-30080122(+)$1	257	77	103	23.4793
UUCCUUAUCAAAAGCCAUUAGGGAGU	chr10:101591267-101591502(+)$1	235	44	70	21.7460
UGGAAAACUGGGAUUUUAUUUCCAAA	chr10:7785947-7786161(+)$1	214	164	190	24.0902

#DB
(.((((................))))	chr6:7562787-7563016(+)$1	1	137	163	21.1070
((((((.............)))))))	chr2:70457787-70458068(-)$1	1	3	29	23.5064
(((((((...........))))))))	chr6:31962199-31962520(+)$1	1	200	226	21.7460
....((.............))...))	chr2:216248669-216248927(-)$1	1	216	242	22.4829
(.((((..............))))))	chr8:134256497-134256734(-)$1	1	146	172	21.7641
.(((((...........))))).)).	chrX:70793400-70793694(+)$1	1	208	234	21.1919
(((.((..............)).)))	chr3:186334887-186335097(+)$1	1	129	155	22.5979
((.(((............))))))))	chr2:216283878-216284159(-)$1	1	251	277	23.3907
(((((((...........))))))))	chr2:216271749-216271993(-)$1	1	202	228	22.3326
..((...............))..)))	chrX:132887430-132887643(-)$1	1	68	94	17.6697
.(((((............))))).))	chr12:9227184-9227421(-)$1	1	86	112	20.5230
((((((..............))))))	chr2:216269141-216269440(-)$1	1	63	89	20.5911
(((.((.............)))))))	chr2:21252680-21252936(-)$1	1	146	172	23.3938
(.(((...............))))))	chr12:57574081-57574356(+)$1	1	86	112	18.7055
((((((............)))))).)	chr19:45412205-45412464(+)$1	1	203	229	22.6615
((((((............))))))).	chr1:19446700-19446942(-)$1	1	49	75	23.5537
(((.((.............)).))))	chrX:18954138-18954368(-)$1	1	98	124	23.3922
(((.((...........)).))))))	chr2:54876128-54876390(+)$1	1	195	221	21.0195
((((((..............))))))	chr1:19474403-19474671(-)$1	1	218	244	22.0565
..((((............))))...)	chr6:168366379-168366658(+)$1	1	211	237	22.9288
(((.((..............)).)))	chr17:62500006-62500334(-)$1	1	85	111	23.0164
((((((.............)))))))	chr17:79817090-79817364(-)$1	1	80	106	21.6608
(.((((............)))).)))	chr20:17600906-17601114(-)$1	1	117	143	23.0948
..((((............))))...)	chr19:6719122-6719332(-)$1	1	15	41	23.1965
)(((((.............)))))..	chr6:144832070-144832326(+)$1	1	153	179	21.3745
(.(................)))))))	chr3:133473234-133473515(+)$1	1	111	137	21.1458
((((((...........)))))))))	chr12:9246040-9246254(-)$1	1	27	53	20.8268
((.(((............))))))).	chr19:6710683-6710949(-)$1	1	12	38	23.1221
(((((((...........))))))).	chr2:54873444-54873683(+)$1	1	84	110	21.7291
..(((((...........)))))...	chr7:100773603-100773832(+)$1	1	36	62	21.9954
((((((...........))))))(((	chr16:30080036-30080308(+)$1	1	12	38	20.6519
.(((((............)))))...	chr2:216299442-216299646(-)$1	1	9	35	21.4393
(((.((..............)).)))	chr3:186334897-186335105(+)$1	1	119	145	22.5979
((((................)).)))	chr4:83793037-83793294(-)$1	1	146	172	20.9402
((((((.............)))))).	chr6:144814473-144814690(+)$1	1	30	56	21.7783
(.(((..............))).)))	chr7:5428141-5428478(-)$1	1	5	31	22.8186
((((.((...........))))))..	chr2:44201186-44201538(-)$1	1	154	180	19.2973
.((((((...........)).)))).	chr3:186336224-186336439(+)$1	1	102	128	19.3613
(.((...............)))))))	chr2:216296569-216296781(-)$1	1	32	58	18.4173
.(((((.(...........).)))))	chr2:216246834-216247037(-)$1	1	176	202	20.0219
(.(((..............)))..))	chr11:129979360-129979597(+)$1	1	22	48	22.6425
(.(((................)))))	chr1:8923192-8923459(-)$1	1	176	202	21.7806
((((((.............)))))).	chr2:216256358-216256606(-)$1	1	211	237	21.7783
.((((((...........)).)))).	chr11:129992098-129992364(+)$1	1	188	214	21.2653
.(((((...............)))))	chr9:117015063-117015310(+)$1	1	181	207	18.5441
((((((..............)).)))	chr2:216297959-216298229(-)$1	1	154	180	22.2329
((((((..............))))))	chr1:55643535-55643838(-)$1	1	204	230	22.9990
((((((............).))))).	chr21:46916893-46917106(+)$1	1	48	74	23.6499
.(((((............)))))...	chr16:30079865-30080122(+)$1	1	77	103	23.4793
(((((((...........))))))))	chr10:101591267-101591502(+)$1	1	44	70	21.7460
((((((............))))))))	chr10:7785947-7786161(+)$1	1	164	190	24.0902

#PSSM
f : 0.15	d : 0.13	e : 0.09	i : 0.09	! : 0.09	g : 0.09	= : 0.05	: : 0.05	c : 0.05	# : 0.03	b : 0.01	h : 0.01	$ : 0.01	[ : 0.01	" : 0.01	
e : 0.21	[ : 0.17	f : 0.13	d : 0.11	i : 0.09	g : 0.07	! : 0.05	# : 0.03	= : 0.03	h : 0.01	c : 0.01	
e : 0.21	d : 0.17	f : 0.13	i : 0.09	c : 0.09	g : 0.07	b : 0.05	[ : 0.03	= : 0.03	# : 0.01	h : 0.01	a : 0.01	
d : 0.17	e : 0.17	f : 0.13	[ : 0.11	c : 0.11	i : 0.05	b : 0.05	g : 0.05	= : 0.03	# : 0.01	h : 0.01	y : 0.01	
e : 0.17	b : 0.15	d : 0.13	f : 0.13	c : 0.11	i : 0.05	g : 0.05	= : 0.03	x : 0.03	y : 0.03	h : 0.01	[ : 0.01	
b : 0.21	e : 0.15	f : 0.13	d : 0.09	i : 0.05	x : 0.05	g : 0.05	y : 0.05	c : 0.03	= : 0.03	w : 0.03	h : 0.01	a : 0.01	
u : 0.23	w : 0.19	v : 0.15	y : 0.07	t : 0.07	x : 0.07	b : 0.05	i : 0.03	= : 0.01	g : 0.01	e : 0.01	[ : 0.01	
t : 0.23	u : 0.23	w : 0.19	v : 0.15	y : 0.07	x : 0.07	a : 0.01	
t : 0.25	u : 0.23	w : 0.19	v : 0.15	y : 0.07	x : 0.07	
t : 0.25	u : 0.23	w : 0.19	v : 0.15	y : 0.07	x : 0.07	
t : 0.25	u : 0.23	w : 0.19	v : 0.15	y : 0.07	x : 0.07	
t : 0.25	u : 0.23	w : 0.19	v : 0.15	y : 0.07	x : 0.07	
t : 0.25	u : 0.23	w : 0.19	v : 0.15	y : 0.07	x : 0.07	
t : 0.25	u : 0.23	w : 0.19	v : 0.15	y : 0.07	x : 0.07	
t : 0.25	u : 0.23	w : 0.19	v : 0.15	y : 0.07	x : 0.07	
t : 0.25	u : 0.23	w : 0.19	v : 0.15	y : 0.07	x : 0.07	
t : 0.25	u : 0.23	w : 0.19	v : 0.15	y : 0.07	x : 0.07	
u : 0.23	w : 0.19	t : 0.17	v : 0.15	y : 0.07	x : 0.07	f : 0.03	e : 0.01	b : 0.01	
w : 0.19	v : 0.15	e : 0.09	y : 0.07	x : 0.07	b : 0.07	f : 0.05	d : 0.05	i : 0.03	c : 0.03	= : 0.03	g : 0.03	t : 0.01	a : 0.01	
b : 0.15	w : 0.15	e : 0.11	f : 0.11	c : 0.07	y : 0.05	i : 0.05	d : 0.05	= : 0.03	x : 0.03	g : 0.03	] : 0.03	a : 0.03	
b : 0.19	f : 0.15	e : 0.13	c : 0.11	d : 0.09	i : 0.05	g : 0.05	] : 0.05	y : 0.03	= : 0.03	h : 0.01	x : 0.01	
e : 0.19	d : 0.15	f : 0.15	b : 0.09	c : 0.09	g : 0.07	i : 0.05	= : 0.05	y : 0.01	3 : 0.01	2 : 0.01	h : 0.01	] : 0.01	
e : 0.17	] : 0.15	f : 0.15	d : 0.11	i : 0.07	g : 0.07	3 : 0.05	= : 0.05	c : 0.05	2 : 0.03	h : 0.01	
d : 0.23	e : 0.13	f : 0.11	i : 0.09	3 : 0.09	g : 0.09	= : 0.05	c : 0.05	b : 0.01	: : 0.01	h : 0.01	7 : 0.01	2 : 0.01	
d : 0.21	e : 0.11	g : 0.11	i : 0.09	f : 0.09	3 : 0.07	b : 0.05	= : 0.05	c : 0.03	: : 0.03	F : 0.01	h : 0.01	] : 0.01	7 : 0.01	
d : 0.17	i : 0.09	] : 0.09	e : 0.09	: : 0.09	c : 0.07	g : 0.07	= : 0.05	b : 0.03	f : 0.03	3 : 0.03	F : 0.01	h : 0.01	E : 0.01	4 : 0.01	7 : 0.01	

#score	1109.3118801053117
#seq	51
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_CDS_m1_run2.txt

#BEAR
iiiii[a[dddd$$$$$ccclllcccdddd]a]iiiiiii	chr5:154135498-154135746(+)$1	248	25	65	13.2240
[ccc!!ffffff!!cccnnnnnccc22ffffff22ccc]a	chr19:18112126-18112390(+)$1	264	144	184	13.8133
ffff$$$$$ddddcccooooooccc22ddddffffff22g	chr14:105267569-105267823(+)$1	254	63	103	12.5108
iiiiii!!dddd!!ccc[bbmmmmbb]ccc333dddd22i	chr2:242707056-242707337(+)$1	281	127	167	12.2599
=========!!a[eeeeemmmmeeeeea==========ff	chr9:139564582-139564827(+)$1	245	49	89	14.4405
c!!a[dddd[eeeeecccmmmmccc333eeeee]dddda2	chr22:20073462-20073716(+)$1	254	67	107	13.9928
BBffffff[ccc"""cccmmmmccc4444ccc]ffffffc	chr19:917492-917733(+)$1	241	42	82	13.0080
[ccc[eeeeebba[ddddmmmmdddd]a]bb]eeeee]cc	chrX:48814596-48814806(-)$1	210	44	84	12.4913
f####ffffff####cccmmmmcccffffffffffff444	chr19:18111975-18112272(+)$1	297	68	108	13.1820
[ccc[eeeeebba[ddddmmmmdddd]a]bb]eeeee]cc	chrX:48814630-48814848(-)$1	218	86	126	12.4913
=======[ccc[a!!bb!!ammmma22bba]ccc======	chr9:101558633-101558849(-)$1	216	114	154	16.2834
ddd[bb[a[dddd"""ccclllccc22dddd]a]bbdddd	chr9:101558577-101558792(-)$1	215	128	168	13.3206
====="""eeeeexxxxxxxxxxxxxxxeeeee=======	chr5:31515522-31515791(-)$1	269	210	250	11.8683
=========!!a[eeeeemmmmeeeeea==========ff	chr9:139564627-139564843(+)$1	216	4	44	14.4405
ee$$$$$eeeee####bbmmmmbb333eeeeeeeeee]cc	chr19:46142015-46142254(-)$1	239	14	54	13.1913
eee[a[a[ccc[ddddoooooodddd]ccc]a]a]eeeee	chr3:49055793-49056057(-)$1	264	50	90	12.3325
=======[ccc[a!!bb!!ammmma22bba]ccc======	chr9:101558600-101558819(-)$1	219	84	124	16.2834
fffff!!dddd!!cccooooooccc22dddd333ffffff	chr19:46522399-46522676(+)$1	277	94	134	14.7804
eeeee[ffffff[a[cccmmmmccc]a]ffffff22eeee	chrX:48814285-48814537(-)$1	252	43	83	12.7319
[ccc!!ffffff!!cccnnnnnccc22ffffff22ccc]a	chr19:18112190-18112456(+)$1	266	80	120	13.8133
ffff[ccc"""eeeee!!ammmma22eeeee22cccffff	chr13:47127534-47127781(+)$1	247	194	234	11.8678
eeeeeeeeee[a[a[cccmmmmccca]a]eeeee]eeeee	chr9:139565244-139565522(+)$1	278	103	143	13.2936
iiiiiiiiidddd!!cccmmmmccc22dddd22iiiiiii	chr22:20073731-20073977(+)$1	246	168	208	18.0878
""==========rrrrrrrrr==========333eeeeeh	chr14:101350980-101351207(+)$1	227	83	123	10.8546
=========!!a[eeeeemmmmeeeeea==========:e	chr9:139564511-139564722(+)$1	211	120	160	13.5964
====####ccc####ddddmmmmdddd]ccc22=======	chr10:70481250-70481464(+)$1	214	87	127	15.4816
[ccc[eeeeebba[ddddmmmmdddd]a]bb]eeeee]cc	chrX:48814606-48814830(-)$1	224	68	108	12.4913
[dddd[ggggggg[bb[ammmmabbggggggg22dddd22	chr19:40741696-40741934(-)$1	238	136	176	11.5173
iiiiiiiiidddd!!cccmmmmccc22dddd22iiiiiii	chr22:20073867-20074168(+)$1	301	32	72	18.0878
gggggccc[ccc[cccccclllccc22ccc]cccccc]gg	chr2:54197781-54198040(-)$1	259	151	191	15.4409
cc[ffffffdddd!!bbnnnnnbb333dddd]ffffff]c	chr17:33968795-33969030(+)$1	235	99	139	12.3649
c!!a[dddd[eeeeecccmmmmccc333eeeee]dddda2	chr22:20073440-20073661(+)$1	221	89	129	13.9928
=======[ccc[a!!bb!!ammmma22bba]ccc======	chr9:101558592-101558800(-)$1	208	65	105	16.2834
]ffffffccc[ccc[ddddllldddd]ccc333cccgggg	chr9:139564522-139564782(+)$1	260	169	209	12.4943
cccffffffdddd[abbmmmmbb]a22dddd]ffffff]c	chr10:70287015-70287285(-)$1	270	83	123	12.0536
dddda[ccc####a!!bbnnnnnbb22a4444ccc]a]dd	chr22:20073968-20074193(+)$1	225	172	212	12.3296
ff]cccggggggg!!cccmmmmccc]gggggggdddd###	chr22:19951529-19951773(+)$1	244	148	188	13.2615
=======[ccc[a!!bb!!ammmma22bba]ccc======	chr9:101558651-101558910(-)$1	259	175	215	16.2834
!!ccc"""a[ccc"""bbmmmmbb333ccc]a333ccc22	chr9:139563966-139564209(+)$1	243	21	61	15.8052
c!!a[dddd[eeeeecccmmmmccc333eeeee]dddda2	chr22:20073378-20073640(+)$1	262	151	191	13.9928
iiiii!!dddd!!cccooooooccc22dddd]iiiiiiii	chr12:62996887-62997129(+)$1	242	45	85	16.6172
=======[ccc[a!!bb!!ammmma22bba]ccc======	chr9:101558619-101558833(-)$1	214	98	138	16.2834
iiiiiiiiidddd!!cccmmmmccc22dddd22iiiiiii	chr22:20073777-20074035(+)$1	258	122	162	18.0878
iiiii!!dddd!!cccooooooccc22dddd]iiiiiiii	chr12:62996797-62997070(+)$1	273	135	175	16.6172
eebb[ccc!!iiiiiiiiillliiiiiiiii22ccc]bb:	chr5:179046277-179046530(-)$1	253	166	206	10.6803
====####ccc####ddddmmmmdddd]ccc22=======	chr10:70481264-70481493(+)$1	229	73	113	15.4816
ee[bb[ggggggg!!bboooooobb22ggggggg]bb]ee	chr9:101558397-101558688(-)$1	291	136	176	13.6069
!!bb"""eeeee!!ddddllldddd333eeeee333bb22	chr17:8108163-8108386(-)$1	223	99	139	13.2110
gggg!!bb####ccc[ccclllccc22ccc22bb22gggg	chr22:20073593-20073819(+)$1	226	164	204	13.7731
========!!a[bbddddllldddd22bb]a22=======	chr1:151238392-151238639(+)$1	247	121	161	14.9809
Fbb[a[ffffff"""cccmmmmccc333ffffffa]bb::	chr9:140006577-140006827(-)$1	250	42	82	12.5026
fffccc!!ccc####cccmmmmccc333ccc]ccc22fff	chr3:49050262-49050495(+)$1	233	35	75	16.1390
[ccc[ggggggg"""cccooooooccc]gggggggcccbb	chr22:46505757-46506000(+)$1	243	133	173	13.7796
iiiiiiiiidddd!!cccmmmmccc22dddd22iiiiiii	chr22:20073835-20074067(+)$1	232	64	104	18.0878

#otherMatches

#Seq PSSM
GCAGCAGGAGCGCGAGAGCCCGCGGCCGCUGCAGCUGCCC	chr5:154135498-154135746(+)$1	248	25	65	13.2240
GGCGGGGCGGCCACCCACUGGUUGGAGGGUCGCAGCGUGG	chr19:18112126-18112390(+)$1	264	144	184	13.8133
GCGCUUCCCGGCCCACCGUGCCGUGCUGGCCGCGUGCAGC	chr14:105267569-105267823(+)$1	254	63	103	12.5108
GCCCUGGAGCCCCACGUGUACGAGUGGACGGCCGGGCAGC	chr2:242707056-242707337(+)$1	281	127	167	12.2599
UGCAGUGCUAGGAGGGGCGGCUGUCCCCAGCGCUGCGUCA	chr9:139564582-139564827(+)$1	245	49	89	14.4405
CAGGAGAAGCGGUGAUGGAGAGCCGAGCUCGCCCCUUCCA	chr22:20073462-20073716(+)$1	254	67	107	13.9928
GUCCUGGGGGGCACCGGCCAACGCCUCCGGCUGCCCGGGC	chr19:917492-917733(+)$1	241	42	82	13.0080
ggccgaugcccccggcgccgcggcgcggcggagguguggg	chrX:48814596-48814806(-)$1	210	44	84	12.4913
GAAACCCCGGGGAUCUGCAGGCGCGCCCGGGCCGUGUGCC	chr19:18111975-18112272(+)$1	297	68	108	13.1820
ggccgaugcccccggcgccgcggcgcggcggagguguggg	chrX:48814630-48814848(-)$1	218	86	126	12.4913
GCUGCGCGCGUGUGACCAGGGCGACAcggagacggcgcgg	chr9:101558633-101558849(-)$1	216	114	154	16.2834
ccgagcgcggcgcggagccggaggcgggcgcggagccggc	chr9:101558577-101558792(-)$1	215	128	168	13.3206
accccuggagauugugaaucaguaaguagaucuggggugg	chr5:31515522-31515791(-)$1	269	210	250	11.8683
UGCAGUGCUAGGAGGGGCGGCUGUCCCCAGCGCUGCGUCA	chr9:139564627-139564843(+)$1	216	4	44	14.4405
CCGUUUUCAUCGGAGACCUCCGGGGAGCGGUGGGGGUGGA	chr19:46142015-46142254(-)$1	239	14	54	13.1913
UCCGGUCACCAUGGCGACCAGGCGCCUUGGGGUCGGGGAG	chr3:49055793-49056057(-)$1	264	50	90	12.3325
GCUGCGCGCGUGUGACCAGGGCGACAcggagacggcgcgg	chr9:101558600-101558819(-)$1	219	84	124	16.2834
CCUCAGGGGGAGCGGUAGUGUGGCCAAUUCUGGAUGAGGU	chr19:46522399-46522676(+)$1	277	94	134	14.7804
CGGCGACGCGCUGGGCGCAGCGGCGGCGGGUGUGGGUGCC	chrX:48814285-48814537(-)$1	252	43	83	12.7319
GGCGGGGCGGCCACCCACUGGUUGGAGGGUCGCAGCGUGG	chr19:18112190-18112456(+)$1	266	80	120	13.8133
GCUUGAGGAGGCGGCCAACUCCGGGGGGCUGAACCUGAGC	chr13:47127534-47127781(+)$1	247	194	234	11.8678
GGGUGUGGGUGGGGAGCCGGCCGGCCGUGACCCAGCGCCU	chr9:139565244-139565522(+)$1	278	103	143	13.2936
AGGAGCAGAGCGCGACGUGCGGGCGGAGUGCGGUCUGCUC	chr22:20073731-20073977(+)$1	246	168	208	18.0878
UUUGAUGAUGGAUUCUUAUGCUCCAUCAUCGUCUCAAAUG	chr14:101350980-101351207(+)$1	227	83	123	10.8546
UGCAGUGCUAGGAGGGGCGGCUGUCCCCAGCGCUGCGUCA	chr9:139564511-139564722(+)$1	211	120	160	13.5964
CGGUUUUACCCUCCUGGCCCCCCGGCCCGGGACAUCGUGG	chr10:70481250-70481464(+)$1	214	87	127	15.4816
ggccgaugcccccggcgccgcggcgcggcggagguguggg	chrX:48814606-48814830(-)$1	224	68	108	12.4913
AGGUGAGGGCUGGCGUCGGCCCCACCCAGCCCAGCGCCAG	chr19:40741696-40741934(-)$1	238	136	176	11.5173
AGGAGCAGAGCGCGACGUGCGGGCGGAGUGCGGUCUGCUC	chr22:20073867-20074168(+)$1	301	32	72	18.0878
gcccccggagccgggcgggcgucccgagccgggcccgcgg	chr2:54197781-54198040(-)$1	259	151	191	15.4409
GGUGCAGCUCACUCUGCUUACUGCCAUAGUGAAGCUGUUU	chr17:33968795-33969030(+)$1	235	99	139	12.3649
CAGGAGAAGCGGUGAUGGAGAGCCGAGCUCGCCCCUUCCA	chr22:20073440-20073661(+)$1	221	89	129	13.9928
GCUGCGCGCGUGUGACCAGGGCGACAcggagacggcgcgg	chr9:101558592-101558800(-)$1	208	65	105	16.2834
UGCCAGUGUUGGGAGGGGCACAGCCUGUCUGCAGACGGUA	chr9:139564522-139564782(+)$1	260	169	209	12.4943
GUUCCGGCUAUGGUCCCGUCCGGUGUUCUGUAAGUUGGCA	chr10:70287015-70287285(-)$1	270	83	123	12.0536
UUCACGGCUAAAGCAAUCGUUCAGAGAGACAGAGUGGAUG	chr22:20073968-20074193(+)$1	225	172	212	12.3296
GGCGCUGUUCCAGGUCACCCUUGUGGUUGGAGCGUCCCAG	chr22:19951529-19951773(+)$1	244	148	188	13.2615
GCUGCGCGCGUGUGACCAGGGCGACAcggagacggcgcgg	chr9:101558651-101558910(-)$1	259	175	215	16.2834
ACUCUAGAUGCCCAGCAGGUGACUAAGGGGGAGUAGGAUG	chr9:139563966-139564209(+)$1	243	21	61	15.8052
CAGGAGAAGCGGUGAUGGAGAGCCGAGCUCGCCCCUUCCA	chr22:20073378-20073640(+)$1	262	151	191	13.9928
GGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCCCCCAC	chr12:62996887-62997129(+)$1	242	45	85	16.6172
GCUGCGCGCGUGUGACCAGGGCGACAcggagacggcgcgg	chr9:101558619-101558833(-)$1	214	98	138	16.2834
AGGAGCAGAGCGCGACGUGCGGGCGGAGUGCGGUCUGCUC	chr22:20073777-20074035(+)$1	258	122	162	18.0878
GGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCCCCCAC	chr12:62996797-62997070(+)$1	273	135	175	16.6172
CAGGGGAGGAGUACGGGGGAGGCCUUCGUGCAGUUUGCUU	chr5:179046277-179046530(-)$1	253	166	206	10.6803
CGGUUUUACCCUCCUGGCCCCCCGGCCCGGGACAUCGUGG	chr10:70481264-70481493(+)$1	229	73	113	15.4816
GGACGAGGCGGGCAACACCGCACUGCAGUUCGCCGCGGCC	chr9:101558397-101558688(-)$1	291	136	176	13.6069
UCGGAACGGCUGCCCCUGGCCCAGGUCUCAGCCCACCCUU	chr17:8108163-8108386(-)$1	223	99	139	13.2110
GUAGUGGCCACAGCCCGCGCACCGCCCGGCACGCACCUGC	chr22:20073593-20073819(+)$1	226	164	204	13.7731
GGCAGGAGGAGGAGGCCCGGCGGGCAGCUGCAGCUUCUGC	chr1:151238392-151238639(+)$1	247	121	161	14.9809
CCCAGAUCCCCUGCAGGACCAUUCCGAGGGGGGACAGGUU	chr9:140006577-140006827(-)$1	250	42	82	12.5026
CCCUGCGUGGUUAUGAGGAGCUCCUGUUGCUGGCAUCGGG	chr3:49050262-49050495(+)$1	233	35	75	16.1390
CGACCAGGGUGGACUAGGGGCCUGUCUCCCAUUCUGUCUC	chr22:46505757-46506000(+)$1	243	133	173	13.7796
AGGAGCAGAGCGCGACGUGCGGGCGGAGUGCGGUCUGCUC	chr22:20073835-20074067(+)$1	232	64	104	18.0878

#DB
(((((.(.((((.....(((...))))))).).)))))))	chr5:154135498-154135746(+)$1	1	25	65	13.2240
.(((..((((((..(((.....)))..))))))..))).)	chr19:18112126-18112390(+)$1	1	144	184	13.8133
((((.....(((((((......)))..))))))))))..)	chr14:105267569-105267823(+)$1	1	63	103	12.5108
((((((..((((..(((.((....)).)))...))))..)	chr2:242707056-242707337(+)$1	1	127	167	12.2599
(((((((((..(.(((((....))))))))))))))))((	chr9:139564582-139564827(+)$1	1	49	89	14.4405
(..(.((((.((((((((....)))...))))).))))).	chr22:20073462-20073716(+)$1	1	67	107	13.9928
((((((((.(((...(((....)))....))).))))))(	chr19:917492-917733(+)$1	1	42	82	13.0080
.(((.((((((((.((((....)))).).)).))))).))	chrX:48814596-48814806(-)$1	1	44	84	12.4913
(....((((((....(((....)))))))))))))))...	chr19:18111975-18112272(+)$1	1	68	108	13.1820
.(((.((((((((.((((....)))).).)).))))).))	chrX:48814630-48814848(-)$1	1	86	126	12.4913
(((((((.(((.(..((..(....)..))).)))))))))	chr9:101558633-101558849(-)$1	1	114	154	16.2834
(((.((.(.((((...(((...)))..)))).).))))))	chr9:101558577-101558792(-)$1	1	128	168	13.3206
(((((...(((((...............))))))))))))	chr5:31515522-31515791(-)$1	1	210	250	11.8683
(((((((((..(.(((((....))))))))))))))))((	chr9:139564627-139564843(+)$1	1	4	44	14.4405
((.....(((((....((....))...)))))))))).))	chr19:46142015-46142254(-)$1	1	14	54	13.1913
(((.(.(.(((.((((......)))).))).).).)))))	chr3:49055793-49056057(-)$1	1	50	90	12.3325
(((((((.(((.(..((..(....)..))).)))))))))	chr9:101558600-101558819(-)$1	1	84	124	16.2834
(((((..((((..(((......)))..))))...))))))	chr19:46522399-46522676(+)$1	1	94	134	14.7804
(((((.((((((.(.(((....))).).))))))..))))	chrX:48814285-48814537(-)$1	1	43	83	12.7319
.(((..((((((..(((.....)))..))))))..))).)	chr19:18112190-18112456(+)$1	1	80	120	13.8133
((((.(((...(((((..(....)..)))))..)))))))	chr13:47127534-47127781(+)$1	1	194	234	11.8678
((((((((((.(.(.(((....)))).).))))).)))))	chr9:139565244-139565522(+)$1	1	103	143	13.2936
(((((((((((((..(((....)))..))))..)))))))	chr22:20073731-20073977(+)$1	1	168	208	18.0878
..((((((((((.........))))))))))...))))))	chr14:101350980-101351207(+)$1	1	83	123	10.8546
(((((((((..(.(((((....)))))))))))))))).(	chr9:139564511-139564722(+)$1	1	120	160	13.5964
((((....(((....((((....)))).)))..)))))))	chr10:70481250-70481464(+)$1	1	87	127	15.4816
.(((.((((((((.((((....)))).).)).))))).))	chrX:48814606-48814830(-)$1	1	68	108	12.4913
.((((.(((((((.((.(....))))))))))..))))..	chr19:40741696-40741934(-)$1	1	136	176	11.5173
(((((((((((((..(((....)))..))))..)))))))	chr22:20073867-20074168(+)$1	1	32	72	18.0878
((((((((.(((.((((((...)))..))).)))))).))	chr2:54197781-54198040(-)$1	1	151	191	15.4409
((.((((((((((..((.....))...)))).)))))).)	chr17:33968795-33969030(+)$1	1	99	139	12.3649
(..(.((((.((((((((....)))...))))).))))).	chr22:20073440-20073661(+)$1	1	89	129	13.9928
(((((((.(((.(..((..(....)..))).)))))))))	chr9:101558592-101558800(-)$1	1	65	105	16.2834
.))))))(((.(((.((((...)))).)))...)))((((	chr9:139564522-139564782(+)$1	1	169	209	12.4943
(((((((((((((.(((....)).)..)))).)))))).)	chr10:70287015-70287285(-)$1	1	83	123	12.0536
(((((.(((....(..((.....))..)....))).).))	chr22:20073968-20074193(+)$1	1	172	212	12.3296
)).)))(((((((..(((....))).)))))))((((...	chr22:19951529-19951773(+)$1	1	148	188	13.2615
(((((((.(((.(..((..(....)..))).)))))))))	chr9:101558651-101558910(-)$1	1	175	215	16.2834
..(((...(.(((...((....))...))).)...)))..	chr9:139563966-139564209(+)$1	1	21	61	15.8052
(..(.((((.((((((((....)))...))))).))))).	chr22:20073378-20073640(+)$1	1	151	191	13.9928
(((((..((((..(((......)))..)))).))))))))	chr12:62996887-62997129(+)$1	1	45	85	16.6172
(((((((.(((.(..((..(....)..))).)))))))))	chr9:101558619-101558833(-)$1	1	98	138	16.2834
(((((((((((((..(((....)))..))))..)))))))	chr22:20073777-20074035(+)$1	1	122	162	18.0878
(((((..((((..(((......)))..)))).))))))))	chr12:62996797-62997070(+)$1	1	135	175	16.6172
))((.(((..(((((((((...)))))))))..))).)).	chr5:179046277-179046530(-)$1	1	166	206	10.6803
((((....(((....((((....)))).)))..)))))))	chr10:70481264-70481493(+)$1	1	73	113	15.4816
((.((.(((((((..((......))..))))))).)).))	chr9:101558397-101558688(-)$1	1	136	176	13.6069
..((...(((((..((((...))))...)))))...))..	chr17:8108163-8108386(-)$1	1	99	139	13.2110
((((..((....(((.(((...)))..)))..))..))))	chr22:20073593-20073819(+)$1	1	164	204	13.7731
((((((((..(.((((((...))))..)).)..)))))))	chr1:151238392-151238639(+)$1	1	121	161	14.9809
(((.(.((((((...(((....)))...))))))).))..	chr9:140006577-140006827(-)$1	1	42	82	12.5026
((((((..(((....(((....)))...))).)))..)))	chr3:49050262-49050495(+)$1	1	35	75	16.1390
.(((.(((((((...(((......))).))))))))))))	chr22:46505757-46506000(+)$1	1	133	173	13.7796
(((((((((((((..(((....)))..))))..)))))))	chr22:20073835-20074067(+)$1	1	64	104	18.0878

#PSSM
= : 0.22	i : 0.14	[ : 0.12	f : 0.11	e : 0.11	c : 0.09	d : 0.03	g : 0.03	! : 0.03	B : 0.01	" : 0.01	] : 0.01	F : 0.01	
= : 0.22	i : 0.14	c : 0.14	f : 0.11	e : 0.11	! : 0.09	d : 0.05	g : 0.03	B : 0.01	# : 0.01	" : 0.01	b : 0.01	
= : 0.24	i : 0.14	c : 0.14	f : 0.11	! : 0.05	d : 0.05	e : 0.05	b : 0.05	g : 0.03	[ : 0.03	# : 0.01	$ : 0.01	] : 0.01	
= : 0.24	c : 0.16	i : 0.14	f : 0.12	a : 0.05	[ : 0.05	b : 0.05	e : 0.03	d : 0.03	g : 0.03	# : 0.01	$ : 0.01	
= : 0.20	[ : 0.16	i : 0.14	f : 0.09	! : 0.05	# : 0.05	a : 0.05	c : 0.05	$ : 0.03	b : 0.03	e : 0.03	d : 0.01	g : 0.01	" : 0.01	
= : 0.18	[ : 0.12	! : 0.11	i : 0.09	f : 0.09	c : 0.09	e : 0.07	d : 0.05	" : 0.05	$ : 0.03	# : 0.03	b : 0.01	g : 0.01	
= : 0.18	f : 0.16	! : 0.09	e : 0.07	c : 0.07	i : 0.07	g : 0.07	d : 0.05	" : 0.05	a : 0.03	$ : 0.03	# : 0.03	[ : 0.01	b : 0.01	
f : 0.14	[ : 0.12	d : 0.11	e : 0.11	= : 0.09	c : 0.09	i : 0.07	g : 0.07	! : 0.03	" : 0.03	# : 0.03	$ : 0.01	a : 0.01	b : 0.01	
c : 0.20	d : 0.14	f : 0.12	e : 0.12	= : 0.07	i : 0.07	g : 0.07	[ : 0.05	! : 0.03	$ : 0.01	" : 0.01	a : 0.01	# : 0.01	
d : 0.24	c : 0.22	e : 0.12	f : 0.09	! : 0.09	[ : 0.07	g : 0.07	# : 0.03	" : 0.01	= : 0.01	
d : 0.24	c : 0.22	e : 0.11	f : 0.09	g : 0.07	! : 0.05	b : 0.05	[ : 0.03	# : 0.03	" : 0.01	= : 0.01	i : 0.01	a : 0.01	
d : 0.18	e : 0.12	[ : 0.12	# : 0.11	f : 0.07	a : 0.07	c : 0.07	g : 0.07	b : 0.05	! : 0.05	= : 0.01	i : 0.01	
d : 0.16	a : 0.14	! : 0.12	[ : 0.11	# : 0.11	e : 0.09	" : 0.05	g : 0.05	c : 0.05	$ : 0.01	r : 0.01	i : 0.01	b : 0.01	
! : 0.29	c : 0.12	e : 0.12	" : 0.09	[ : 0.09	# : 0.09	a : 0.05	$ : 0.01	x : 0.01	d : 0.01	r : 0.01	i : 0.01	b : 0.01	
! : 0.24	c : 0.16	e : 0.12	d : 0.11	" : 0.09	# : 0.09	[ : 0.05	$ : 0.01	x : 0.01	r : 0.01	b : 0.01	a : 0.01	i : 0.01	
c : 0.42	d : 0.16	b : 0.16	e : 0.07	" : 0.03	$ : 0.01	x : 0.01	# : 0.01	r : 0.01	! : 0.01	i : 0.01	[ : 0.01	
c : 0.38	b : 0.20	d : 0.14	o : 0.09	e : 0.05	$ : 0.01	x : 0.01	! : 0.01	r : 0.01	[ : 0.01	i : 0.01	
c : 0.35	d : 0.14	o : 0.11	! : 0.11	n : 0.05	e : 0.05	b : 0.05	[ : 0.01	x : 0.01	r : 0.01	a : 0.01	m : 0.01	i : 0.01	
m : 0.44	o : 0.12	! : 0.09	c : 0.07	n : 0.07	d : 0.05	l : 0.03	b : 0.01	x : 0.01	a : 0.01	r : 0.01	i : 0.01	
m : 0.49	o : 0.12	l : 0.12	a : 0.09	n : 0.07	c : 0.01	b : 0.01	x : 0.01	r : 0.01	
m : 0.61	l : 0.14	o : 0.12	n : 0.07	x : 0.01	r : 0.01	
m : 0.59	o : 0.12	l : 0.11	n : 0.07	d : 0.03	x : 0.01	= : 0.01	b : 0.01	
c : 0.42	m : 0.16	d : 0.12	b : 0.07	e : 0.05	o : 0.03	l : 0.01	x : 0.01	= : 0.01	a : 0.01	n : 0.01	i : 0.01	
c : 0.44	d : 0.16	m : 0.11	b : 0.11	e : 0.05	x : 0.01	a : 0.01	= : 0.01	] : 0.01	i : 0.01	o : 0.01	
c : 0.46	d : 0.16	a : 0.11	b : 0.07	e : 0.05	3 : 0.05	x : 0.01	2 : 0.01	= : 0.01	i : 0.01	
2 : 0.42	3 : 0.16	d : 0.12	e : 0.05	c : 0.03	] : 0.03	b : 0.01	4 : 0.01	f : 0.01	x : 0.01	a : 0.01	= : 0.01	g : 0.01	i : 0.01	
2 : 0.40	3 : 0.16	] : 0.12	e : 0.07	d : 0.05	g : 0.03	4 : 0.01	f : 0.01	x : 0.01	a : 0.01	= : 0.01	i : 0.01	c : 0.01	
d : 0.22	a : 0.14	c : 0.11	3 : 0.11	b : 0.11	] : 0.07	f : 0.05	g : 0.05	e : 0.03	4 : 0.01	x : 0.01	= : 0.01	i : 0.01	
d : 0.22	c : 0.16	e : 0.12	b : 0.11	f : 0.09	= : 0.07	] : 0.07	g : 0.07	4 : 0.03	i : 0.01	
d : 0.22	c : 0.18	e : 0.14	f : 0.09	a : 0.09	= : 0.07	g : 0.07	b : 0.05	4 : 0.01	i : 0.01	] : 0.01	
d : 0.20	] : 0.16	e : 0.14	f : 0.09	= : 0.07	c : 0.07	g : 0.07	b : 0.05	3 : 0.03	4 : 0.01	i : 0.01	2 : 0.01	a : 0.01	
2 : 0.18	] : 0.16	e : 0.12	c : 0.12	f : 0.11	3 : 0.07	g : 0.07	a : 0.05	= : 0.05	4 : 0.01	
e : 0.18	2 : 0.18	f : 0.14	c : 0.14	3 : 0.09	] : 0.05	= : 0.05	g : 0.05	i : 0.03	a : 0.01	b : 0.01	
c : 0.20	i : 0.12	f : 0.12	= : 0.12	e : 0.09	] : 0.07	3 : 0.07	2 : 0.05	d : 0.03	g : 0.03	a : 0.01	b : 0.01	
= : 0.22	i : 0.12	f : 0.11	d : 0.11	c : 0.11	e : 0.09	2 : 0.07	] : 0.05	3 : 0.03	b : 0.01	a : 0.01	g : 0.01	
= : 0.22	c : 0.14	i : 0.12	e : 0.12	f : 0.11	d : 0.11	2 : 0.05	b : 0.03	] : 0.03	3 : 0.01	
= : 0.22	e : 0.14	i : 0.12	f : 0.12	d : 0.12	c : 0.09	b : 0.05	g : 0.03	a : 0.01	] : 0.01	2 : 0.01	
= : 0.22	i : 0.12	] : 0.12	f : 0.11	d : 0.09	c : 0.07	e : 0.07	b : 0.05	2 : 0.03	g : 0.03	4 : 0.01	# : 0.01	
= : 0.16	i : 0.12	f : 0.11	2 : 0.09	e : 0.09	] : 0.07	c : 0.07	a : 0.05	g : 0.05	d : 0.03	: : 0.03	b : 0.03	4 : 0.01	# : 0.01	
= : 0.16	i : 0.14	c : 0.12	2 : 0.11	f : 0.09	e : 0.09	g : 0.07	a : 0.03	d : 0.03	: : 0.03	4 : 0.01	h : 0.01	# : 0.01	b : 0.01	

#score	759.8907890412995
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_UTR_m3_run1.txt

#BEAR
EEEEEBB}EEEEE}BBYYEEEEE}F	chr7:100733120-100733368(+)$1	248	191	216	14.1485
FFFFF}A}DDDD}CCCYYBB:::::	chr9:134351211-134351462(+)$1	251	166	191	11.1397
FFFFFFYYA}CCC}BBYYGGGGGGG	chr11:61583197-61583442(-)$1	245	171	196	10.3424
FFFFFFZZZCCC?????DDDD}BB}	chr3:49050532-49050811(+)$1	279	242	267	11.5166
JJJJJJJJJJFFFFFFYYCCC}CCC	chr16:87736108-87736346(-)$1	238	212	237	9.1860
YYCCC}A}DDDDFFFFFFEEEEEbb	chr19:1205793-1206049(+)$1	256	220	245	9.8363
JJJJJJJJA}EEEEEYYCCC}A}CC	chr10:102759598-102759822(+)$1	224	198	223	12.4235
FF}DDDD?????CCCYYEEEEEFFF	chr19:5112547-5112801(+)$1	254	179	204	11.4116
DD}FFFFFF}EEEEE~~~~DDDD:e	chr21:45181306-45181581(+)$1	275	123	148	11.3276
IIIIIII}A~~~~BB}CCC}A}BB_	chr22:50013851-50014112(-)$1	261	207	232	12.7175
fFFFFFFYYEEEEEZZZEEEEE___	chr19:45166584-45166853(+)$1	269	218	243	13.3950
FFFFFFCCCDDDD}CCC}AYYBB::	chr16:87736015-87736269(-)$1	254	228	253	11.4947
GGGGGGG}A}EEEEEYYEEEEE}BB	chr8:144335235-144335505(+)$1	270	228	253	14.4324
HHHHHHH}CCC}CCCYYEEEEE___	chr22:41922799-41923135(-)$1	336	287	312	13.0331
}DDDD}CCC}CCCZZZCCC}CCC::	chr17:62893384-62893718(-)$1	334	202	227	10.7583
JJJ}CCCBB}FFFFFF}DDDDHHHH	chr1:245026251-245026534(-)$1	283	221	246	9.7910
FFFFFZZZEEEEE~~~~CCCDDDDA	chr10:17271170-17271440(-)$1	270	228	253	13.4867
FF}BB}CCC}DDDDYYDDDDYYDDD	chr16:87737546-87737801(-)$1	255	159	184	12.5333
DDDDD}ABBYYBB}CCCBB}DDDD:	chr4:760404-760675(-)$1	271	153	178	10.7984
}FFFFFF}EEEEE~~~~BB}DDDDY	chr1:182360246-182360488(-)$1	242	203	228	13.7445
J}EEEEE}CCCZZZEEEEEEEEEE:	chr19:1470173-1470441(-)$1	268	242	267	12.3650
FFFFF}CCCBBZZZBB}EEEEE}A}	chr3:195635529-195635820(-)$1	291	262	287	14.0402
FFFFFZZZEEEEEDDDD:FFFFFFC	chr1:144931690-144931961(-)$1	271	130	155	10.9497
GGGGGGGYYFFFFFFEEEEECCCZZ	chr7:1887566-1887817(-)$1	251	193	218	10.1378
CDDDDZZZBBYYCCCYYA}FFFFFF	chr22:19951898-19952165(+)$1	267	235	260	11.1968
FFFFBB{DDDDBBEEEEEAEEEEE:	chr14:105715325-105715579(-)$1	254	11	36	11.3883
FFFFFFCCCYYEEEEE}DDDD~~~~	chr7:1132495-1132768(-)$1	273	150	175	14.3564
J}BBYYA______BBYYEEEEE}BB	chr21:46644312-46644583(+)$1	271	179	204	13.1663
}A}FFFFFF}CCCZZZEEEEE::::	chr6:3272236-3272458(+)$1	222	195	220	11.1814
:EEEEEBBYYEEEEEYYDDDD}CCC	chr22:50013912-50014185(-)$1	273	230	255	13.7501
EEEEE}CCC}CCCZZZCCC}CCCCC	chr19:1478845-1479131(-)$1	286	246	271	12.1988
EEE}A}A}CCC}CCCYYEEEEE}DD	chr4:763952-764205(-)$1	253	219	244	14.2786
IIII}BB~~~~EEEEE}DDDDYYCC	chr12:104697385-104697719(+)$1	334	282	307	14.1686
FFFFFFCCC}BBCCC}EEEEE::bb	chr21:45157358-45157709(+)$1	351	198	223	11.9837
HHHHHH}BB}EEEEE?????A}HHH	chr11:58346512-58346870(+)$1	358	315	340	10.0636
CCC}CCCYYEEEEE}AYYBBYYCCC	chr7:150027324-150027538(+)$1	214	188	213	12.1370
?EEEEECCC}EEEEE}CCCYYFFFF	chr19:58772269-58772509(+)$1	240	176	201	11.7457
EEEEE}DDDDDDDDYYCCC}CCC}E	chr9:134350651-134350920(+)$1	269	218	243	11.0397
GGGGGGG~~~~DDDDYYDDDDFFFF	chr16:585934-586192(+)$1	258	186	211	11.4656
EEEEEZZZA}A}A}BB}EEEEE}BB	chr19:1205699-1205976(+)$1	277	230	255	14.1798
IIIII}CCCYYDDDDYYDDDD::::	chr14:105714088-105714371(-)$1	283	257	282	12.0144
GGGGGGG~~~~EEEEE}DDDDZZZH	chr16:87732516-87732755(-)$1	239	164	189	11.6770
B}CCC}CCC}A}CCCYYDDDDYYCC	chr1:2326295-2326542(+)$1	247	122	147	12.9895
EEEEE}CCC}FFFFFF}EEEEEDDD	chr19:1104362-1104635(+)$1	273	246	271	12.5917
FFFFF}A}A}EEEEEYYEEEEE:::	chr16:87736793-87737050(-)$1	257	130	155	15.8493
:::EEEEEEEEEE~~~~DDDD}CCC	chr7:1132622-1132902(-)$1	280	245	270	11.4100
JJJJ______CCC~~~~EEEEEEEE	chr17:27404291-27404546(-)$1	255	227	252	12.1313
FFFFF}FFFFFF}EEEEEDDDD}BB	chr1:2160051-2160335(+)$1	284	253	278	12.7886
EEEEEBBBB}CCC}FFFFFFYYCCC	chr8:144342430-144342678(+)$1	248	211	236	11.9765
FFFFFCCCYYDDDDAYYEEEEEYYD	chr9:67793818-67794083(-)$1	265	87	112	14.4689
DD}DDDD}BBYYEEEEEEEEEE:::	chr4:1729800-1730054(+)$1	254	203	228	12.0380
FFFFFFA}DDDD}ACCC}HHHHHHH	chr1:144932077-144932378(-)$1	301	179	204	9.4475
GGGGGGGZZZDDDDYYFFFFFF}CC	chr1:6652840-6653088(-)$1	248	192	217	11.0159
GYYDDDDZZZEEEEE}A}EEEEEAY	chr2:97535527-97535791(-)$1	264	200	225	12.5597
C}HHHHHHHHYYDDDD}EEEEE}A:	chr16:8953039-8953336(+)$1	297	271	296	10.2764

#otherMatches

#Seq PSSM
GGACUGGCACAGGGUCCUACAGAGU	chr7:100733120-100733368(+)$1	248	191	216	14.1485
GUGGCAGAUUCUGAAAAUGCAGAGA	chr9:134351211-134351462(+)$1	251	166	191	11.1397
UACGCUCUGGGGCGGUAGGCCCUUC	chr11:61583197-61583442(-)$1	245	171	196	10.3424
CAGUCCUAAGGCAGAAGUCCUGUCG	chr3:49050532-49050811(+)$1	279	242	267	11.5166
AGGAGGCCACGGACAUGCCUGGGAA	chr16:87736108-87736346(-)$1	238	212	237	9.1860
ggccugcgccgccucggccgccggg	chr19:1205793-1206049(+)$1	256	220	245	9.8363
CGCCCCCACUUUCUGGAAGGGGGGC	chr10:102759598-102759822(+)$1	224	198	223	12.4235
AAUGUUCCCUCUGCCCCGAGUGUUU	chr19:5112547-5112801(+)$1	254	179	204	11.4116
UCGCCCACCGGCCUGCGAAGCCAGC	chr21:45181306-45181581(+)$1	275	123	148	11.3276
cccugcuggaaagccacacgcggca	chr22:50013851-50014112(-)$1	261	207	232	12.7175
UGUCUCCAGCACCCAGAAUCUCAUU	chr19:45166584-45166853(+)$1	269	218	243	13.3950
GAGAAAGCCGGGGGUUCCCAGGCUG	chr16:87736015-87736269(-)$1	254	228	253	11.4947
ACGUCCCCGGAGAGUGACAGAGGAG	chr8:144335235-144335505(+)$1	270	228	253	14.4324
UCUGUUUGUUUCUCAAAGCAGAAAA	chr22:41922799-41923135(-)$1	336	287	312	13.0331
AUGGGAAGGCGUGCUUGGGCGGGAU	chr17:62893384-62893718(-)$1	334	202	227	10.7583
CUCUCUUCGGGAUACACGUGGGCUU	chr1:245026251-245026534(-)$1	283	221	246	9.7910
CCAUCCCAGCCGCGGAGCGCGCCAG	chr10:17271170-17271440(-)$1	270	228	253	13.4867
GCCUCAGCCUGCCUGCCUUUGUGCA	chr16:87737546-87737801(-)$1	255	159	184	12.5333
AGUUCUGAGUGAGUCCAAGUGCCGA	chr4:760404-760675(-)$1	271	153	178	10.7984
UCCCGCCUCGGGGUCCCGGGGGCCU	chr1:182360246-182360488(-)$1	242	203	228	13.7445
GUGGCGGAGGCAGUGGCCGGGGCUU	chr19:1470173-1470441(-)$1	268	242	267	12.3650
GCCCGGGCCCCACGGUACCUCCGGG	chr3:195635529-195635820(-)$1	291	262	287	14.0402
UGUGCCAUGCUGACCGGAGACCACC	chr1:144931690-144931961(-)$1	271	130	155	10.9497
GUGUGGUCAGGGGCUGAGACUGGCU	chr7:1887566-1887817(-)$1	251	193	218	10.1378
GCACAGGACCAAGGAGAUGGGGUGG	chr22:19951898-19952165(+)$1	267	235	260	11.1968
GUCCUGGUCGCCCCCGGGGGCCCCA	chr14:105715325-105715579(-)$1	254	11	36	11.3883
GCCCCGAGGAGCCAGAAGCCACAUC	chr7:1132495-1132768(-)$1	273	150	175	14.3564
GGGCAGGGGGCUACUGGGGGGCGGC	chr21:46644312-46644583(+)$1	271	179	204	13.1663
AGUAGUGCCGGCACAAGAGCUGCCU	chr6:3272236-3272458(+)$1	222	195	220	11.1814
gauuugcuGUGACCUGACCUCAAGU	chr22:50013912-50014185(-)$1	273	230	255	13.7501
GAAGCGCGUGCUGCUGCCCACCCGC	chr19:1478845-1479131(-)$1	286	246	271	12.1988
CUGAGUGGUCCAUCCAAUACCCACA	chr4:763952-764205(-)$1	253	219	244	14.2786
GGUAGCGAGUACGCGGCGAAGUAGG	chr12:104697385-104697719(+)$1	334	282	307	14.1686
AGCCUGCCGACGGACACCAGCGAGG	chr21:45157358-45157709(+)$1	351	198	223	11.9837
CUCCGGAGGAGCCCCAACAACGGCC	chr11:58346512-58346870(+)$1	358	315	340	10.0636
GUGCGGCACAGGCCUCUCUGAGCCA	chr7:150027324-150027538(+)$1	214	188	213	12.1370
GCUUGAACUUGGGGGAGGUUAUUCU	chr19:58772269-58772509(+)$1	240	176	201	11.7457
AGAGGACUGCCCCAGAGCCAAGCCC	chr9:134350651-134350920(+)$1	269	218	243	11.0397
GGGCCGGACCUGGGAGUGGCAGGUG	chr16:585934-586192(+)$1	258	186	211	11.4656
CCUCCACAcgcgcggcggccgcggc	chr19:1205699-1205976(+)$1	277	230	255	14.1798
uccagaggccuggcugucaGGAGGG	chr14:105714088-105714371(-)$1	283	257	282	12.0144
CCACUUCCUCCUGGCCUCGGGUGCA	chr16:87732516-87732755(-)$1	239	164	189	11.6770
UGAGGAGCCAGGUGGCAGUCAGGCU	chr1:2326295-2326542(+)$1	247	122	147	12.9895
ccccgcACCUUGGCCUAGCGCGGUG	chr19:1104362-1104635(+)$1	273	246	271	12.5917
AGUGGUGAGCCAGCGAGACAGGACC	chr16:87736793-87737050(-)$1	257	130	155	15.8493
GCAGCCCCAGGGUGACCAGGCAAGC	chr7:1132622-1132902(-)$1	280	245	270	11.4100
UGGUUAAAAUGUUCAAAUUGCCAGC	chr17:27404291-27404546(-)$1	255	227	252	12.1313
GGCCCGGCCGCUUUCUCGGCGCGCU	chr1:2160051-2160335(+)$1	284	253	278	12.7886
UACUGGGGGAGACGUGAGGACCUUU	chr8:144342430-144342678(+)$1	248	211	236	11.9765
gagucgcaaagggccgaccacgaug	chr9:67793818-67794083(-)$1	265	87	112	14.4689
CCUGUGCACACACCUCUGCUCCUGA	chr4:1729800-1730054(+)$1	254	203	228	12.0380
GGAAGCCCGCUGACCGGACUACAGC	chr1:144932077-144932378(-)$1	301	179	204	9.4475
ACACCUCAGAGGGCUGCCCUCCAGA	chr1:6652840-6653088(-)$1	248	192	217	11.0159
UGAGGCUGGAGCCGCGGGGCCCCGG	chr2:97535527-97535791(-)$1	264	200	225	12.5597
CACCAUUGUCACCUUGUCUGGGAGC	chr16:8953039-8953336(+)$1	297	271	296	10.2764

#DB
))))))).))))).))..))))).)	chr7:100733120-100733368(+)$1	1	191	216	14.1485
))))).).)))).)))..)).....	chr9:134351211-134351462(+)$1	1	166	191	11.1397
))))))..).))).))..)))))))	chr11:61583197-61583442(-)$1	1	171	196	10.3424
))))))...))).....)))).)).	chr3:49050532-49050811(+)$1	1	242	267	11.5166
))))))))))))))))..))).)))	chr16:87736108-87736346(-)$1	1	212	237	9.1860
..))).).)))))))))))))))((	chr19:1205793-1206049(+)$1	1	220	245	9.8363
))))))))).)))))..))).).))	chr10:102759598-102759822(+)$1	1	198	223	12.4235
)).)))).....)))..))))))))	chr19:5112547-5112801(+)$1	1	179	204	11.4116
)).)))))).)))))....)))).(	chr21:45181306-45181581(+)$1	1	123	148	11.3276
))))))).)....)).))).).)).	chr22:50013851-50014112(-)$1	1	207	232	12.7175
)))))))..)))))...)))))...	chr19:45166584-45166853(+)$1	1	218	243	13.3950
))))))))))))).))).)..))..	chr16:87736015-87736269(-)$1	1	228	253	11.4947
))))))).).)))))..))))).))	chr8:144335235-144335505(+)$1	1	228	253	14.4324
))))))).))).)))..)))))...	chr22:41922799-41923135(-)$1	1	287	312	13.0331
.)))).))).)))...))).)))..	chr17:62893384-62893718(-)$1	1	202	227	10.7583
))).))))).)))))).))))))))	chr1:245026251-245026534(-)$1	1	221	246	9.7910
)))))...)))))....))))))))	chr10:17271170-17271440(-)$1	1	228	253	13.4867
)).)).))).))))..))))..)))	chr16:87737546-87737801(-)$1	1	159	184	12.5333
))))).)))..)).))))).)))).	chr4:760404-760675(-)$1	1	153	178	10.7984
.)))))).)))))....)).)))).	chr1:182360246-182360488(-)$1	1	203	228	13.7445
).))))).)))...)))))))))).	chr19:1470173-1470441(-)$1	1	242	267	12.3650
))))).)))))...)).))))).).	chr3:195635529-195635820(-)$1	1	262	287	14.0402
)))))...))))))))).(((((((	chr1:144931690-144931961(-)$1	1	130	155	10.9497
)))))))..))))))))))))))..	chr7:1887566-1887817(-)$1	1	193	218	10.1378
)))))...))..)))..).))))))	chr22:19951898-19952165(+)$1	1	235	260	11.1968
((((((.(((((((((((((((((.	chr14:105715325-105715579(-)$1	1	11	36	11.3883
)))))))))..))))).))))....	chr7:1132495-1132768(-)$1	1	150	175	14.3564
).))..)......))..))))).))	chr21:46644312-46644583(+)$1	1	179	204	13.1663
.).)))))).)))...)))))....	chr6:3272236-3272458(+)$1	1	195	220	11.1814
.)))))))..)))))..)))).)))	chr22:50013912-50014185(-)$1	1	230	255	13.7501
))))).))).)))...))).)))))	chr19:1478845-1479131(-)$1	1	246	271	12.1988
))).).).))).)))..))))).))	chr4:763952-764205(-)$1	1	219	244	14.2786
)))).))....))))).))))..))	chr12:104697385-104697719(+)$1	1	282	307	14.1686
))))))))).))))).)))))..((	chr21:45157358-45157709(+)$1	1	198	223	11.9837
)))))).)).))))).....).)))	chr11:58346512-58346870(+)$1	1	315	340	10.0636
))).)))..))))).)..))..)))	chr7:150027324-150027538(+)$1	1	188	213	12.1370
.)))))))).))))).)))..))))	chr19:58772269-58772509(+)$1	1	176	201	11.7457
))))).))))))))..))).))).)	chr9:134350651-134350920(+)$1	1	218	243	11.0397
)))))))....))))..))))))))	chr16:585934-586192(+)$1	1	186	211	11.4656
)))))...).).).)).))))).))	chr19:1205699-1205976(+)$1	1	230	255	14.1798
))))).)))..))))..))))....	chr14:105714088-105714371(-)$1	1	257	282	12.0144
)))))))....))))).))))...)	chr16:87732516-87732755(-)$1	1	164	189	11.6770
).))).))).).)))..))))..))	chr1:2326295-2326542(+)$1	1	122	147	12.9895
))))).))).)))))).))))))))	chr19:1104362-1104635(+)$1	1	246	271	12.5917
))))).).).)))))..)))))...	chr16:87736793-87737050(-)$1	1	130	155	15.8493
...))))))))))....)))).)))	chr7:1132622-1132902(-)$1	1	245	270	11.4100
))))......)))....))))))))	chr17:27404291-27404546(-)$1	1	227	252	12.1313
))))).)))))).))))))))).))	chr1:2160051-2160335(+)$1	1	253	278	12.7886
))))))))).))).))))))..)))	chr8:144342430-144342678(+)$1	1	211	236	11.9765
))))))))..)))))..)))))..)	chr9:67793818-67794083(-)$1	1	87	112	14.4689
)).)))).))..))))))))))...	chr4:1729800-1730054(+)$1	1	203	228	12.0380
))))))).)))).)))).)))))))	chr1:144932077-144932378(-)$1	1	179	204	9.4475
)))))))...))))..)))))).))	chr1:6652840-6653088(-)$1	1	192	217	11.0159
)..))))...))))).).)))))).	chr2:97535527-97535791(-)$1	1	200	225	12.5597
).))))))))..)))).))))).).	chr16:8953039-8953336(+)$1	1	271	296	10.2764

#PSSM
F : 0.29	E : 0.12	J : 0.10	G : 0.10	D : 0.05	I : 0.05	} : 0.05	C : 0.05	H : 0.03	: : 0.03	Y : 0.01	f : 0.01	? : 0.01	B : 0.01	
F : 0.32	E : 0.16	D : 0.09	G : 0.09	J : 0.07	} : 0.07	I : 0.05	Y : 0.03	H : 0.03	A : 0.01	C : 0.01	: : 0.01	
F : 0.29	E : 0.18	} : 0.09	G : 0.09	J : 0.07	C : 0.05	I : 0.05	H : 0.05	D : 0.05	B : 0.01	: : 0.01	Y : 0.01	
F : 0.32	E : 0.18	D : 0.10	G : 0.09	J : 0.05	I : 0.05	H : 0.05	} : 0.05	C : 0.03	B : 0.03	
F : 0.30	E : 0.18	D : 0.10	G : 0.09	C : 0.07	H : 0.05	J : 0.03	I : 0.03	B : 0.03	Y : 0.01	A : 0.01	} : 0.01	_ : 0.01	
} : 0.25	F : 0.18	G : 0.09	B : 0.07	Z : 0.07	E : 0.07	D : 0.05	H : 0.05	C : 0.05	J : 0.03	I : 0.01	Y : 0.01	_ : 0.01	
C : 0.25	A : 0.12	Z : 0.09	F : 0.09	G : 0.09	B : 0.07	D : 0.07	J : 0.03	H : 0.03	E : 0.03	Y : 0.01	I : 0.01	{ : 0.01	} : 0.01	_ : 0.01	
} : 0.21	C : 0.21	Z : 0.12	B : 0.09	Y : 0.07	F : 0.05	~ : 0.05	J : 0.03	D : 0.03	_ : 0.03	? : 0.01	E : 0.01	H : 0.01	
C : 0.25	A : 0.10	B : 0.10	E : 0.09	D : 0.09	Y : 0.09	Z : 0.05	F : 0.05	~ : 0.05	_ : 0.03	J : 0.01	? : 0.01	H : 0.01	
} : 0.30	E : 0.12	D : 0.10	Y : 0.09	C : 0.07	~ : 0.07	B : 0.05	F : 0.03	_ : 0.03	Z : 0.03	J : 0.01	? : 0.01	H : 0.01	
E : 0.27	C : 0.18	D : 0.16	Y : 0.10	F : 0.09	~ : 0.07	B : 0.03	A : 0.03	? : 0.01	_ : 0.01	
E : 0.32	D : 0.18	C : 0.12	F : 0.09	} : 0.07	B : 0.05	Y : 0.05	Z : 0.03	? : 0.01	~ : 0.01	_ : 0.01	
E : 0.34	C : 0.21	D : 0.14	F : 0.09	} : 0.05	B : 0.03	Z : 0.03	? : 0.01	~ : 0.01	_ : 0.01	A : 0.01	
E : 0.29	D : 0.14	C : 0.12	} : 0.10	F : 0.09	Z : 0.09	~ : 0.07	B : 0.03	? : 0.01	A : 0.01	
E : 0.27	C : 0.18	B : 0.10	F : 0.10	Z : 0.07	~ : 0.07	D : 0.07	Y : 0.05	? : 0.01	} : 0.01	A : 0.01	
Y : 0.29	E : 0.14	F : 0.09	~ : 0.09	B : 0.07	C : 0.07	} : 0.07	Z : 0.07	? : 0.03	D : 0.03	A : 0.01	
Y : 0.32	C : 0.14	} : 0.14	E : 0.12	~ : 0.09	F : 0.05	? : 0.03	D : 0.03	Z : 0.01	A : 0.01	
E : 0.36	D : 0.20	C : 0.12	Y : 0.09	F : 0.05	} : 0.05	B : 0.03	~ : 0.01	: : 0.01	A : 0.01	? : 0.01	
E : 0.38	D : 0.21	C : 0.14	B : 0.07	F : 0.05	A : 0.03	G : 0.01	~ : 0.01	} : 0.01	? : 0.01	H : 0.01	
E : 0.40	D : 0.23	} : 0.10	F : 0.07	C : 0.05	B : 0.03	Y : 0.03	G : 0.01	? : 0.01	H : 0.01	
E : 0.38	D : 0.27	C : 0.09	Y : 0.09	F : 0.05	A : 0.03	: : 0.01	G : 0.01	} : 0.01	H : 0.01	
E : 0.34	} : 0.10	D : 0.09	Y : 0.09	F : 0.09	: : 0.07	C : 0.07	H : 0.03	G : 0.01	A : 0.01	B : 0.01	~ : 0.01	Z : 0.01	
C : 0.16	} : 0.16	E : 0.10	: : 0.10	D : 0.10	F : 0.09	B : 0.05	H : 0.05	Y : 0.05	_ : 0.03	G : 0.01	~ : 0.01	Z : 0.01	
C : 0.18	: : 0.14	B : 0.10	D : 0.10	F : 0.09	H : 0.05	E : 0.05	A : 0.05	} : 0.03	b : 0.03	_ : 0.03	Z : 0.03	G : 0.01	~ : 0.01	Y : 0.01	
: : 0.20	C : 0.20	F : 0.09	B : 0.07	H : 0.07	D : 0.07	_ : 0.05	} : 0.03	b : 0.03	Y : 0.03	E : 0.03	G : 0.01	e : 0.01	A : 0.01	Z : 0.01	~ : 0.01	

#score	666.5477845740876
#seq	55
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_transcript_m3_run2.txt

#BEAR
eeeeedddd[bb####dddd####ccc[	chr11:64950356-64950687(+)$1	331	42	70	12.7604
!!dddda!!ccc####ccc^^^^^^^^^	chr16:89365585-89365849(-)$1	264	200	228	9.9936
hhh####eeeee[bb[dddd"""ccc[c	chr16:600599-600840(+)$1	241	70	98	11.2195
eeeee!!ffffff"""dddd$$$$$ddd	chr22:47400861-47401141(+)$1	280	115	143	11.3652
ccc[eeeeeccc"""eeeee"""ggggg	chr7:5569869-5570126(-)$1	257	16	44	11.7809
hhhhhhhh[ccc####ccc!!ccc!!dd	chr4:957452-957701(-)$1	249	114	142	10.2869
iiiiiiiiiccc####dddd"""ggggg	chr1:155242891-155243133(-)$1	242	124	152	14.8478
cc[iiiiiiiii"""iiiiiiiii"""c	chr2:10453051-10453320(+)$1	269	181	209	10.8141
gg!!ggggggg!!ggggggg"""fffff	chr1:227169061-227169312(+)$1	251	22	50	10.9673
dddd[eeeee[ccc!!dddd"""a[ccc	chr7:140178737-140179006(-)$1	269	118	146	11.6772
ccc!!hhhhhhhh!!dddd$$$$$bb!!	chr8:103423649-103423904(-)$1	255	163	191	10.3921
gggggggccc$$$$$eeeee####a[gg	chr4:920421-920726(-)$1	305	104	132	11.0172
iiiiiiiii[bb####dddd!!eeeee#	chr7:75987610-75987877(-)$1	267	122	150	12.9897
fff===========!!dddd"""ggggg	chr14:105244697-105244974(-)$1	277	92	120	13.7959
c[bb!!a[a[a"""bbdddd"""dddd[	chr2:97560416-97560659(-)$1	243	111	139	12.3801
fffhhhhhhhh[a"""dddd[ccclllc	chr11:71935644-71935891(+)$1	247	86	114	9.6370
ddd:==========!!dddd!!dddd$$	chr22:50023652-50023973(-)$1	321	210	238	10.7806
c[bb!!a[a[a"""bbdddd"""dddd[	chr2:97560404-97560616(-)$1	212	68	96	12.3801
e"""hhhhhhhh####dddd!!ffffff	chr19:2445107-2445373(-)$1	266	134	162	12.1464
eeeggggggg"""bb!!ccc$$$$$bb[	chr19:893455-893690(+)$1	235	56	84	10.5636
edddd[eeeeeccc!!dddd$$$$$a[c	chr17:79674874-79675157(+)$1	283	139	167	10.6964
f"""a[=============="""fffff	chr14:23791038-23791279(+)$1	241	108	136	11.5020
d[ddddggggggg"""dddda[eeeee[	chr10:134422234-134422543(+)$1	309	154	182	11.2685
[eeeee"""ccc[a[eeeee"""bb[ee	chr16:88984766-88985019(-)$1	253	81	109	10.3589
==================ccc!!fffff	chr3:194833077-194833335(-)$1	258	22	50	10.5660
dd!!ffffff####a[dddd[bb!!eee	chr19:16187718-16188006(+)$1	288	47	75	10.0960
eee"""iiiiiiiii[dddd####bboo	chr19:5052294-5052589(+)$1	295	150	178	12.2150
[bb[a[hhhhhhhh!!dddd!!a[a"""	chr7:2292109-2292389(-)$1	280	91	119	10.8522
eee=========="""ddddiiiiiiii	chr6:33266643-33266927(-)$1	284	73	101	12.4458
d[a!!ccc!!ffffffdddd"""fffff	chr5:34190028-34190291(-)$1	263	129	157	10.7312
c[a[hhhhhhhh$$$$$ccc!!dddd[a	chr21:46855507-46855754(+)$1	247	106	134	9.8250
ggggdddd[ccc[a!!ccc####ddddp	chr11:378030-378269(+)$1	239	17	45	10.0352
============[abb[a!!a!!fffff	chr19:1410207-1410457(+)$1	250	113	141	10.2756
eeee[a[a!!bb"""eeeee$$$$$ddd	chr16:28835304-28835575(+)$1	271	92	120	10.7053
[eeeee[ccc[bb[a[dddd[eeeee[c	chr17:77811162-77811417(-)$1	255	22	50	9.7081
e[bb!!ggggggg"""dddd####ffff	chr12:133136918-133137218(+)$1	300	11	39	13.6565
[ffffff!!ccc####ccc"""cccmmm	chr22:19929393-19929610(+)$1	217	10	38	9.7867
c####ccc[ccc[bb[dddd[ccc[bb"	chr1:1192742-1192999(-)$1	257	52	80	10.2888
fff[bb[ccc!!ccc[dddd"""dddd[	chr22:50037897-50038196(-)$1	299	36	64	11.2457
ff!!==========eeeee####ggggg	chr22:50036658-50036919(-)$1	261	78	106	11.1865
=============="""ccc"""ccc&&	chr19:54373572-54373895(+)$1	323	127	155	11.9832
Deeeee[ggggggg!!dddd[ccceeee	chrX:48814204-48814457(-)$1	253	101	129	9.4272
!bbiiiiiiiii[dddddddd[gggggg	chr20:62526657-62526961(+)$1	304	128	156	9.5311
ngggggggdddd[bb[dddd$$$$$fff	chr19:1410320-1410597(+)$1	277	18	46	10.1575
eeeee[a[dddd####dddd[eeeee!!	chr4:1241777-1242019(-)$1	242	144	172	11.0528
fff[ccc!!ccc####dddd[dddd[bb	chr16:88981019-88981296(-)$1	277	110	138	11.1232
dd[ccc[eeeee####dddd!!ffffff	chr22:19864236-19864492(-)$1	256	76	104	11.6779

#otherMatches

#Seq PSSM
AUUCCUCCAAGACCUAUGGCAUCAAGUG	chr11:64950356-64950687(+)$1	331	42	70	12.7604
CCAGAGCCACAGUCACUUCCACACUAUC	chr16:89365585-89365849(-)$1	264	200	228	9.9936
CGGUGAGGGCCCCCAGUCGGUGAGGGUC	chr16:600599-600840(+)$1	241	70	98	11.2195
GCAUGCCUGUAUACAUACACACCUUUGU	chr22:47400861-47401141(+)$1	280	115	143	11.3652
cgcaggcggccgcggccccUUCGCCCGU	chr7:5569869-5570126(-)$1	257	16	44	11.7809
UCUGUCCUGUGGUCGAGGGACGCCGCGU	chr4:957452-957701(-)$1	249	114	142	10.2869
GGCCUCGCCGCCAGAACGGUGAGCGCGC	chr1:155242891-155243133(-)$1	242	124	152	14.8478
UGUGAUUCUUCUGAAAGGGUCUUCAUGA	chr2:10453051-10453320(+)$1	269	181	209	10.8141
CCACCUGCACCCUUGGGGUCACUGCAUG	chr1:227169061-227169312(+)$1	251	22	50	10.9673
GGAGGGCGGCCGGCCUGCGGCUAGAGGC	chr7:140178737-140179006(-)$1	269	118	146	11.6772
UUUGAGCCCCUGCAGUGAGGUUUGCCUG	chr8:103423649-103423904(-)$1	255	163	191	10.3921
GGGGCAGUGCGGAGCGCAGGUAAGCAGG	chr4:920421-920726(-)$1	305	104	132	11.0172
GCCCCCGCGGCUCUAGGGGUGCAGGGGA	chr7:75987610-75987877(-)$1	267	122	150	12.9897
CUGAGGGGCUGGGGUUGGGGUGGGGUUU	chr14:105244697-105244974(-)$1	277	92	120	13.7959
ugugggugagugugugugugagugggcg	chr2:97560416-97560659(-)$1	243	111	139	12.3801
GCCGAGCGGAGGGGGAGGGGGCGGCAGC	chr11:71935644-71935891(+)$1	247	86	114	9.6370
CCUGUGGACGCACAGGGGCCGCGGGCAU	chr22:50023652-50023973(-)$1	321	210	238	10.7806
ugugggugagugugugugugagugggcg	chr2:97560404-97560616(-)$1	212	68	96	12.3801
AGAGGCCUGGGGGGAGUCUCAGGGGCCC	chr19:2445107-2445373(-)$1	266	134	162	12.1464
aauuggaacgauacagagaagauuagca	chr19:893455-893690(+)$1	235	56	84	10.5636
CAGCUGUUCCUCUGGGGCCCUUAAGUGG	chr17:79674874-79675157(+)$1	283	139	167	10.6964
CUGGGGCCGGGUCGGGCCGGGGAUGGGU	chr14:23791038-23791279(+)$1	241	108	136	11.5020
GGGGGUGGCCCGACCUGGGCCUGAGGUG	chr10:134422234-134422543(+)$1	309	154	182	11.2685
GUGCCAGUAACCGUGUGGGCUCUGGAGG	chr16:88984766-88985019(-)$1	253	81	109	10.3589
gcgugcgugugugugCACUGCUUCAUCU	chr3:194833077-194833335(-)$1	258	22	50	10.5660
GGGAUGGGGCGGAGGGGGUGAGCGAUCU	chr19:16187718-16188006(+)$1	288	47	75	10.0960
GCCGCAGGUGGGUGGAAGGCAGAGCCUG	chr19:5052294-5052589(+)$1	295	150	178	12.2150
gcaggggugggagggucaggagggcagg	chr7:2292109-2292389(-)$1	280	91	119	10.8522
UGGCUCCUGUCCUCACUUCCUUCCCCUU	chr6:33266643-33266927(-)$1	284	73	101	12.4458
CUCCUGGGCCCCACAGAGUCCUUGUGCU	chr5:34190028-34190291(-)$1	263	129	157	10.7312
GAGUCCUAUAGGGUGAAGGGUCUGCCGU	chr21:46855507-46855754(+)$1	247	106	134	9.8250
UUUCUCCUGUGCGUGAUGGAAGGUUGCG	chr11:378030-378269(+)$1	239	17	45	10.0352
UCCUGGUGGGUUUGGCACGCGGACCCUA	chr19:1410207-1410457(+)$1	250	113	141	10.2756
GGCGGGGGGACGGAAGGAGGGAUGACUG	chr16:28835304-28835575(+)$1	271	92	120	10.7053
UUGGGAAGGGUGUGUGUGGGUGGCCAUG	chr17:77811162-77811417(-)$1	255	22	50	9.7081
CCACACCGCCUCUCCCGGAGCCAAGCGC	chr12:133136918-133137218(+)$1	300	11	39	13.6565
GGGCCGUCGCGGGAGAGGUGAGAGCGCU	chr22:19929393-19929610(+)$1	217	10	38	9.7867
UGGGUCCAGUCGGGUGGUGGGUACAGGU	chr1:1192742-1192999(-)$1	257	52	80	10.2888
cauucaccccaucauuccaucuacccau	chr22:50037897-50038196(-)$1	299	36	64	11.2457
GGCAGGGCCACUAUGGGCCACCCCUCUG	chr22:50036658-50036919(-)$1	261	78	106	11.1865
gggucuggacucgugggucugaaggagg	chr19:54373572-54373895(+)$1	323	127	155	11.9832
CGCGGUUGGCGGGGGCAGUCCCGAGCGU	chrX:48814204-48814457(-)$1	253	101	129	9.4272
ggcgacccccgggccggggcugcgcggg	chr20:62526657-62526961(+)$1	304	128	156	9.5311
GCGGACCCUACAUGGUGGAUGUGAUGGA	chr19:1410320-1410597(+)$1	277	18	46	10.1575
CGGAGCCUCUCUUUCCCUCGACCCGGCU	chr4:1241777-1242019(-)$1	242	144	172	11.0528
CUGAGCUCACCACUCUCCCCCAGCCUUU	chr16:88981019-88981296(-)$1	277	110	138	11.1232
GCGGUGACAGGCAGAAGGGGAAGUUCCC	chr22:19864236-19864492(-)$1	256	76	104	11.6779

#DB
(((((((((.((....((((....(((.	chr11:64950356-64950687(+)$1	1	42	70	12.7604
..(((((..(((....(((.........	chr16:89365585-89365849(-)$1	1	200	228	9.9936
(((....(((((.((.((((...(((.(	chr16:600599-600840(+)$1	1	70	98	11.2195
(((((..((((((...((((.....(((	chr22:47400861-47401141(+)$1	1	115	143	11.3652
(((.((((((((...(((((...(((((	chr7:5569869-5570126(-)$1	1	16	44	11.7809
((((((((.(((....(((..(((..((	chr4:957452-957701(-)$1	1	114	142	10.2869
((((((((((((....((((...(((((	chr1:155242891-155243133(-)$1	1	124	152	14.8478
((.(((((((((...(((((((((...(	chr2:10453051-10453320(+)$1	1	181	209	10.8141
((..(((((((..(((((((...(((((	chr1:227169061-227169312(+)$1	1	22	50	10.9673
((((.(((((.(((..((((...(.(((	chr7:140178737-140179006(-)$1	1	118	146	11.6772
(((..((((((((..((((.....((..	chr8:103423649-103423904(-)$1	1	163	191	10.3921
((((((((((.....(((((....(.((	chr4:920421-920726(-)$1	1	104	132	11.0172
(((((((((.((....((((..(((((.	chr7:75987610-75987877(-)$1	1	122	150	12.9897
((((((((((((((..((((...(((((	chr14:105244697-105244974(-)$1	1	92	120	13.7959
(.((..(.(.(...((((((...((((.	chr2:97560416-97560659(-)$1	1	111	139	12.3801
)))((((((((.(...((((.(((...)	chr11:71935644-71935891(+)$1	1	86	114	9.6370
))).((((((((((..((((..((((..	chr22:50023652-50023973(-)$1	1	210	238	10.7806
(.((..(.(.(...((((((...((((.	chr2:97560404-97560616(-)$1	1	68	96	12.3801
(...((((((((....((((..((((((	chr19:2445107-2445373(-)$1	1	134	162	12.1464
((((((((((...((..(((.....((.	chr19:893455-893690(+)$1	1	56	84	10.5636
(((((.((((((((..((((.....(.(	chr17:79674874-79675157(+)$1	1	139	167	10.6964
(...(.((((((((((((((...(((((	chr14:23791038-23791279(+)$1	1	108	136	11.5020
(.(((((((((((...(((((.(((((.	chr10:134422234-134422543(+)$1	1	154	182	11.2685
.(((((...(((.(.(((((...((.((	chr16:88984766-88985019(-)$1	1	81	109	10.3589
))))))))))))))))))(((..(((((	chr3:194833077-194833335(-)$1	1	22	50	10.5660
((..((((((....(.((((.((..(((	chr19:16187718-16188006(+)$1	1	47	75	10.0960
(((...(((((((((.((((....((..	chr19:5052294-5052589(+)$1	1	150	178	12.2150
.((.(.((((((((..((((..(.(...	chr7:2292109-2292389(-)$1	1	91	119	10.8522
(((((((((((((...((((((((((((	chr6:33266643-33266927(-)$1	1	73	101	12.4458
(.(..(((..((((((((((...(((((	chr5:34190028-34190291(-)$1	1	129	157	10.7312
(.(.((((((((.....(((..((((.(	chr21:46855507-46855754(+)$1	1	106	134	9.8250
((((((((.(((.(..(((....((((.	chr11:378030-378269(+)$1	1	17	45	10.0352
((((((((((((.(((.(..(..(((((	chr19:1410207-1410457(+)$1	1	113	141	10.2756
((((.(.(..((...(((((.....(((	chr16:28835304-28835575(+)$1	1	92	120	10.7053
.(((((.(((.((.(.((((.(((((.(	chr17:77811162-77811417(-)$1	1	22	50	9.7081
(.((..(((((((...((((....((((	chr12:133136918-133137218(+)$1	1	11	39	13.6565
.((((((..(((....(((...(((...	chr22:19929393-19929610(+)$1	1	10	38	9.7867
(....(((.(((.((.((((.(((.((.	chr1:1192742-1192999(-)$1	1	52	80	10.2888
(((.((.(((..(((.((((...((((.	chr22:50037897-50038196(-)$1	1	36	64	11.2457
((..(((((((((((((((....(((((	chr22:50036658-50036919(-)$1	1	78	106	11.1865
((((((((((((((...(((...(((..	chr19:54373572-54373895(+)$1	1	127	155	11.9832
((((((.(((((((..((((.(((((((	chrX:48814204-48814457(-)$1	1	101	129	9.4272
.(((((((((((.((((((((.((((((	chr20:62526657-62526961(+)$1	1	128	156	9.5311
.)))))))((((.((.((((.....(((	chr19:1410320-1410597(+)$1	1	18	46	10.1575
(((((.(.((((....((((.(((((..	chr4:1241777-1242019(-)$1	1	144	172	11.0528
(((.(((..(((....((((.((((.((	chr16:88981019-88981296(-)$1	1	110	138	11.1232
((.(((.(((((....((((..((((((	chr22:19864236-19864492(-)$1	1	76	104	11.6779

#PSSM
e : 0.21	c : 0.14	d : 0.12	f : 0.12	[ : 0.08	g : 0.06	= : 0.06	! : 0.04	h : 0.04	i : 0.04	D : 0.02	n : 0.02	
e : 0.21	f : 0.12	[ : 0.12	d : 0.10	g : 0.08	c : 0.06	= : 0.06	h : 0.04	i : 0.04	" : 0.04	b : 0.04	! : 0.02	# : 0.02	
e : 0.21	d : 0.10	f : 0.10	b : 0.10	! : 0.06	g : 0.06	= : 0.06	h : 0.04	c : 0.04	i : 0.04	[ : 0.04	" : 0.04	a : 0.04	# : 0.02	
e : 0.14	[ : 0.10	! : 0.10	= : 0.10	d : 0.08	i : 0.08	g : 0.08	b : 0.06	" : 0.06	# : 0.04	h : 0.04	: : 0.02	f : 0.02	c : 0.02	
e : 0.14	= : 0.14	! : 0.10	d : 0.08	h : 0.08	i : 0.08	g : 0.08	# : 0.04	[ : 0.04	a : 0.04	f : 0.04	c : 0.04	" : 0.02	b : 0.02	
= : 0.14	e : 0.10	h : 0.10	d : 0.08	! : 0.08	i : 0.08	g : 0.08	[ : 0.08	c : 0.08	f : 0.04	# : 0.02	" : 0.02	a : 0.02	b : 0.02	
= : 0.17	h : 0.12	g : 0.12	i : 0.10	[ : 0.10	a : 0.08	e : 0.06	c : 0.06	d : 0.04	f : 0.04	# : 0.02	! : 0.02	" : 0.02	
= : 0.17	h : 0.12	g : 0.12	e : 0.10	i : 0.10	c : 0.10	! : 0.06	[ : 0.06	d : 0.04	f : 0.04	" : 0.02	a : 0.02	
= : 0.17	! : 0.10	e : 0.10	i : 0.10	g : 0.10	h : 0.10	d : 0.06	[ : 0.06	c : 0.06	f : 0.04	a : 0.04	" : 0.02	
c : 0.25	= : 0.17	g : 0.10	h : 0.10	[ : 0.08	e : 0.08	i : 0.06	f : 0.04	! : 0.04	d : 0.04	
c : 0.19	= : 0.17	h : 0.10	g : 0.08	b : 0.06	e : 0.06	i : 0.06	f : 0.04	[ : 0.04	a : 0.04	d : 0.04	$ : 0.02	" : 0.02	# : 0.02	! : 0.02	
c : 0.23	= : 0.17	b : 0.08	h : 0.08	i : 0.06	" : 0.06	g : 0.06	e : 0.04	f : 0.04	! : 0.04	d : 0.04	$ : 0.02	[ : 0.02	# : 0.02	
# : 0.23	[ : 0.14	= : 0.14	" : 0.12	c : 0.06	g : 0.06	f : 0.04	h : 0.04	$ : 0.04	! : 0.02	a : 0.02	i : 0.02	b : 0.02	
# : 0.23	" : 0.21	= : 0.12	b : 0.08	c : 0.06	a : 0.06	g : 0.04	$ : 0.04	! : 0.02	i : 0.02	h : 0.02	f : 0.02	[ : 0.02	d : 0.02	
# : 0.21	" : 0.19	! : 0.17	b : 0.14	$ : 0.04	= : 0.04	a : 0.04	g : 0.02	[ : 0.02	i : 0.02	f : 0.02	c : 0.02	e : 0.02	d : 0.02	
# : 0.21	! : 0.17	[ : 0.14	" : 0.12	e : 0.10	b : 0.06	d : 0.04	= : 0.04	i : 0.02	g : 0.02	f : 0.02	$ : 0.02	
d : 0.63	e : 0.10	c : 0.08	= : 0.04	i : 0.02	g : 0.02	! : 0.02	$ : 0.02	[ : 0.02	" : 0.02	
d : 0.63	c : 0.14	e : 0.10	= : 0.04	i : 0.02	g : 0.02	a : 0.02	
d : 0.63	c : 0.17	e : 0.10	i : 0.02	g : 0.02	= : 0.02	! : 0.02	
d : 0.61	e : 0.08	c : 0.08	! : 0.04	# : 0.04	^ : 0.02	i : 0.02	g : 0.02	$ : 0.02	= : 0.02	" : 0.02	
" : 0.29	! : 0.14	[ : 0.14	# : 0.12	$ : 0.12	i : 0.04	a : 0.04	^ : 0.02	c : 0.02	d : 0.02	
" : 0.29	! : 0.17	# : 0.12	$ : 0.12	c : 0.08	i : 0.04	[ : 0.04	e : 0.04	^ : 0.02	b : 0.02	d : 0.02	
" : 0.27	# : 0.12	$ : 0.12	c : 0.10	e : 0.08	d : 0.06	i : 0.04	f : 0.04	! : 0.04	^ : 0.02	b : 0.02	a : 0.02	g : 0.02	
c : 0.14	f : 0.14	d : 0.14	$ : 0.12	g : 0.10	# : 0.08	e : 0.08	i : 0.04	^ : 0.02	a : 0.02	b : 0.02	! : 0.02	[ : 0.02	
f : 0.17	d : 0.14	$ : 0.10	g : 0.10	e : 0.10	c : 0.08	b : 0.06	! : 0.04	[ : 0.04	a : 0.04	^ : 0.02	" : 0.02	l : 0.02	i : 0.02	
f : 0.19	d : 0.17	e : 0.12	g : 0.10	c : 0.08	b : 0.08	[ : 0.06	" : 0.04	^ : 0.02	! : 0.02	l : 0.02	a : 0.02	i : 0.02	m : 0.02	
f : 0.19	d : 0.14	g : 0.12	e : 0.10	[ : 0.08	b : 0.06	c : 0.04	" : 0.04	! : 0.04	^ : 0.02	l : 0.02	$ : 0.02	o : 0.02	i : 0.02	m : 0.02	& : 0.02	
f : 0.19	[ : 0.12	c : 0.12	g : 0.12	d : 0.06	e : 0.06	! : 0.04	" : 0.04	^ : 0.02	# : 0.02	$ : 0.02	o : 0.02	i : 0.02	a : 0.02	p : 0.02	m : 0.02	& : 0.02	b : 0.02	

#score	524.1966940473658
#seq	47
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_transcript_m2_run2.txt

#BEAR
c!!ccc[eeeeemmmmeeeee]ccc333ccc]	chr19:46701109-46701356(-)$1	247	102	134	12.4702
gg[bba[eeeeemmmmeeeee22a]bb]gggg	chr4:79697703-79697963(+)$1	260	133	165	11.3956
d[ffffffccc[ammmma]ccc]ffffffddd	chr17:73775389-73775800(-)$1	411	255	287	9.7283
iiiii!!eeeeemmmmeeeee666666iiiii	chr7:5569877-5570167(-)$1	290	171	203	10.2541
[cccgggggggnnnnnggggggg4444ccc]e	chr7:106809585-106809891(+)$1	306	153	185	9.8271
c!!ccc"""ccclllccc22ccc22cccccc[	chr4:1331596-1331834(+)$1	238	34	66	9.7767
eeee[gggggggmmmmgggggggeeeee]ccc	chr7:158621823-158622195(-)$1	372	200	232	11.8480
"ccc[cccddddmmmmdddd22ccc22cccbb	chr22:20105396-20105645(+)$1	249	120	152	10.3654
dd!!ffffff[ammmma]ffffff333dddd]	chr21:44846348-44846606(-)$1	258	86	118	11.8332
FFFbbgggggggmmmmggggggg]bbgggggg	chr1:154975751-154976020(+)$1	269	90	122	10.7315
ff[ccc[eeeeemmmmeeeeeccc22ffffff	chr8:145650750-145651027(-)$1	277	49	81	11.6271
[ccc[ccc!!bbmmmmbb4444ccc]ccc]dd	chr7:5459902-5460144(-)$1	242	134	166	12.3301
a[dddd[eeeeemmmmeeeee]dddd]a]fff	chr13:92000444-92000677(+)$1	233	120	152	10.2198
[ccc####eeeeellleeeee4444ccc]eee	chr9:136136599-136136828(-)$1	229	74	106	10.0920
fffeeeee[cccmmmmccc]eeeee22fffff	chr2:172379370-172379634(+)$1	264	231	263	10.4349
ffff[gggggggmmmmggggggg4444fffff	chr6:16266313-16266548(+)$1	235	187	219	13.2077
fffiiiiiiiiimmmmiiiiiiiii4444fff	chr22:50037514-50037815(-)$1	301	208	240	12.3201
gg"""dddd[bbmmmmbbdddd333ggggggg	chr21:45734190-45734457(+)$1	267	6	38	12.5162
iiiiiiiiacccmmmmccc]a22iiiiiiiii	chr20:61484113-61484365(-)$1	252	210	242	12.2906
cc####ffffffmmmmffffff4444ccc]hh	chr19:1409752-1409983(+)$1	231	113	145	12.6430
f!!a[a[fffffflllffffff]aa22fffff	chr19:2270420-2270667(+)$1	247	94	126	9.6457
ddbb####ddddmmmmdddd4444bb]dddd]	chr12:109124822-109125061(-)$1	239	110	142	10.2085
d[bb[a[cccbbmmmmbb]ccc]abbdddd]d	chr6:52227283-52227557(+)$1	274	59	91	11.4580
gg####ffffffmmmmffffff333ggggggg	chr4:174254962-174255293(-)$1	331	177	209	13.1485
ffff!!ccc[bbmmmmbb]ccc]ffffffccc	chr19:50190021-50190274(+)$1	253	88	120	12.1999
c####gggggggmmmmggggggg333ccceee	chr18:47340356-47340623(+)$1	267	34	66	13.9596
Hbb!!gggggggmmmmggggggg22bbeeeee	chr13:92000760-92001000(+)$1	240	153	185	11.4028
fffffa[cccbbmmmmbb]ccc]a]ffffff]	chr17:7477067-7477321(+)$1	254	136	168	12.2707
gggggg[bb[bbmmmmbb]bb]ggggggg]dd	chr9:101867477-101867761(+)$1	284	64	96	11.5913
#bb"""bbddddmmmmdddd]bb4444bb333	chr3:9438829-9439066(-)$1	237	182	214	9.9873
ggggggggggggglllggggggg22ggggggg	chr6:86351858-86352142(-)$1	284	127	159	10.6050
b[a!!ccc!!bbmmmmbb22ccc22a]bbeee	chr16:85645403-85645694(+)$1	291	42	74	11.8889
:ccc[gggggggmmmmggggggg]ccca[hhh	chr19:2269964-2270232(+)$1	268	86	118	11.4756
eeee[a"""ddddmmmmdddd333a]eeeee]	chr19:1408157-1408393(+)$1	236	176	208	9.6041
eeeee[ccc[bbmmmmbbccc]eeeeebb[ee	chr22:50041211-50041462(-)$1	251	60	92	10.4363
fffff!!eeeeemmmmeeeee22ffffff333	chr7:1483133-1483387(-)$1	254	147	179	10.8717
!ffffff[a[bblllbbaffffff4444dddd	chrX:153991370-153991660(+)$1	290	59	91	9.3001
b[ccc[aaddddmmmmdddd]a]a]ccc]bb2	chr7:23454478-23454730(-)$1	252	110	142	10.8517
dddbb[ffffffmmmmffffffbb4444dddd	chr10:43903577-43903851(-)$1	274	73	105	10.3881
cc[ffffff[bbmmmmbb]ffffff]ccc]a]	chr22:21797710-21797996(+)$1	286	149	181	12.0948
d####gggggggmmmmggggggg]dddd:ccc	chr17:80055695-80055944(-)$1	249	193	225	11.3617
ccc[ffffff[ammmma]ffffff]cccbbhh	chr1:1821850-1822078(-)$1	228	76	108	11.0311
=========[bbmmmmbb===========a[e	chr9:96929145-96929414(+)$1	269	169	201	13.2714
======ddddbbmmmmbb]dddd333======	chr7:5569705-5569980(-)$1	275	181	213	12.5586
bb[ccc!!ddddmmmmdddd]ccc]bb22ddd	chr19:3700033-3700296(-)$1	263	48	80	10.3402
bb[bbgggggggmmmmggggggg]bbbb]a]c	chr9:139560736-139560956(+)$1	220	128	160	11.1700
gg!!ccc[cccmmmmccc]ccc22gggggggd	chr2:47402798-47403050(-)$1	252	171	203	10.6837
!!ggggggg[bbmmmmbb22ggggggg22ccc	chr19:2271019-2271288(+)$1	269	161	193	11.8879
Bccc[ccc[cccmmmmccc22ccc]ccceeee	chr22:20110999-20111235(+)$1	236	42	74	11.3795
B:==========mmmm==========dddd!!	chr5:170814956-170815236(+)$1	280	44	76	10.7213
eeee"""a[a[ammmma]a]a333eeeee]dd	chr2:97559879-97560169(-)$1	290	7	39	11.7698
ee"""gggggggmmmmgggggggeeeee]ddd	chr22:50031772-50032103(-)$1	331	99	131	12.1566
cc[ffffff[bbmmmmbbffffff]ccc]ddd	chr9:131452335-131452617(+)$1	282	144	176	12.1691
c[ccc[ffffffmmmmffffffcccccc]fff	chr19:3699971-3700220(-)$1	249	33	65	11.8309
d[dddd[a[cccmmmmccc22a]dddd]dddd	chr19:34287171-34287445(+)$1	274	41	73	10.2491
#ffffff[ddddmmmmdddd]ffffffbbfff	chr16:1428106-1428336(-)$1	230	53	85	9.9342
cc!!dddd[cccmmmmccc]dddd22ccceee	chr5:177632280-177632520(+)$1	240	91	123	11.0438
bbeeeeeeeeeemmmmeeeee4444eeeee]b	chr2:97534560-97534861(-)$1	301	68	100	10.2569
gggggg[bb[bbmmmmbb]bb22ggggggg]f	chr19:4037218-4037484(+)$1	266	100	132	11.4822

#otherMatches

#Seq PSSM
GGGGAGGggccaggugugguugcucacacuug	chr19:46701109-46701356(-)$1	247	102	134	12.4702
GCCGCCACCAGGUCACCCUGGAAGAGUCGCUG	chr4:79697703-79697963(+)$1	260	133	165	11.3956
GUCCCGACGCCGGGUUCCGGGCAGUCGGGCCU	chr17:73775389-73775800(-)$1	411	255	287	9.7283
CCGGAGAUGGGGGACACCCCACGCCAGUUCGG	chr7:5569877-5570167(-)$1	290	171	203	10.2541
GGGUUGCCCUUGGGGUGGGGGCAGUUAACCGU	chr7:106809585-106809891(+)$1	306	153	185	9.8271
ccugugacugacucuguccccaccugugacuG	chr4:1331596-1331834(+)$1	238	34	66	9.7767
CAGCUGGCGCGGAGCUUCGCGCUGCUGCUGCC	chr7:158621823-158622195(-)$1	372	200	232	11.8480
GGCCCACUUGGGGCUCCCCACUAGUACGGUGC	chr22:20105396-20105645(+)$1	249	120	152	10.3654
ggagcggggcaggggacgguccugggauccgg	chr21:44846348-44846606(-)$1	258	86	118	11.8332
CCACCCCGCGCCCCCUGGCGCGGUGGAUUGGC	chr1:154975751-154976020(+)$1	269	90	122	10.7315
GGAGGCACCCACUUGUGUGGGGCCCACCCAGC	chr8:145650750-145651027(-)$1	277	49	81	11.6271
AGGUGCGGCAGGGACACCGAAACCGGACCAUC	chr7:5459902-5460144(-)$1	242	134	166	12.3301
GGCCCGUGCCUUCUccggggcccggggcgcgc	chr13:92000444-92000677(+)$1	233	120	152	10.2198
GUCUAAUGCCAGGAAGCCUGGAACGGGGGUUC	chr9:136136599-136136828(-)$1	229	74	106	10.0920
CGGGCGCGAUGCCGGAGCGCCGCGCAGUCGGG	chr2:172379370-172379634(+)$1	264	231	263	10.4349
ucugaggcuucauuccugaagucaguguagac	chr6:16266313-16266548(+)$1	235	187	219	13.2077
GCCGUUUCUGGAGUCUUCUGGAAGCUCUGGGC	chr22:50037514-50037815(-)$1	301	208	240	12.3201
UGGGGUGGGACUGCUGAGCCUGGGGCGGUGGG	chr21:45734190-45734457(+)$1	267	6	38	12.5162
UCUGCGGACCGGGUGACCGUGCUUCUGUGGAA	chr20:61484113-61484365(-)$1	252	210	242	12.2906
CAGCCUGAGGAGCUCCCUCUUCCUGAUGCAGA	chr19:1409752-1409983(+)$1	231	113	145	12.6430
GGAGCUGGGGGUGGCGCACUCCGACAGCCCGG	chr19:2270420-2270667(+)$1	247	94	126	9.6457
AAGCAGGGUCCCUGUGGGGAGGAGGCUUUCGA	chr12:109124822-109125061(-)$1	239	110	142	10.2085
GACUGCGAUGCUGGGGAGUCAUGGAGCCUGAG	chr6:52227283-52227557(+)$1	274	59	91	11.4580
GCGGAGUCACCGGACUCGGUGAAGGGCGGGCG	chr4:174254962-174255293(-)$1	331	177	209	13.1485
ggggcagcuggcgggggcgagCACCUCUGCCU	chr19:50190021-50190274(+)$1	253	88	120	12.1999
GCAGAGGCUUGGGCCGCCGAGCUGGACCCGGA	chr18:47340356-47340623(+)$1	267	34	66	13.9596
CGGAGGAGGCCGCAGUCGGCCUCAGCCGCGGC	chr13:92000760-92001000(+)$1	240	153	185	11.4028
CUUCCAGCGCGCUGGUGCUGCGGUGGGAGGUG	chr17:7477067-7477321(+)$1	254	136	168	12.2707
gcggcggcggcggcggcggcggcgCUGCUCCC	chr9:101867477-101867761(+)$1	284	64	96	11.5913
ACCGGACGGAGCCAUUGCUCUCGCAGAGGGAG	chr3:9438829-9439066(-)$1	237	182	214	9.9873
cgggcgggcggccgggggucgucggcgcccgg	chr6:86351858-86352142(-)$1	284	127	159	10.6050
CGCAAUCCGGGCUGGCGCGGGGAGGGGGAGGG	chr16:85645403-85645694(+)$1	291	42	74	11.8889
GUCGGGGGAGGCGUGUGUCUUUUGCGGGGUUC	chr19:2269964-2270232(+)$1	268	86	118	11.4756
GGAGUCCAGGGCGCCGUCGCCGCCGCCUCCCG	chr19:1408157-1408393(+)$1	236	176	208	9.6041
GGGAGUUGGUGAUGCCUCCCACCUCCCCUGGG	chr22:50041211-50041462(-)$1	251	60	92	10.4363
guuggacuaggguccacccuaacccagcguga	chr7:1483133-1483387(-)$1	254	147	179	10.8717
GCGCGAGAGUGGGAGCCCCUCGCGGUGACUUG	chrX:153991370-153991660(+)$1	290	59	91	9.3001
GACGGGACCUGCAGAUGCAGUGAUGCUGACUG	chr7:23454478-23454730(-)$1	252	110	142	10.8517
GUCCCACGCGGUGAGCACCGCGGGCUGAGAUU	chr10:43903577-43903851(-)$1	274	73	105	10.3881
CGAGGCUCAGAGCUGCCUGUGGGCCCCGCUGC	chr22:21797710-21797996(+)$1	286	149	181	12.0948
CCUUCGCUUCCCGUGGGGGAGGCCGCGGACCC	chr17:80055695-80055944(-)$1	249	193	225	11.3617
CCGGGGUGCGGGGUUGUGUGCGCCGCGGGCGC	chr1:1821850-1822078(-)$1	228	76	108	11.0311
UGCUGCGGCUGGAGGUCCGCUGCGGCAGCCGU	chr9:96929145-96929414(+)$1	269	169	201	13.2714
GCGCGCUGGUCCUUUGGGCGCUAACUGCGUGC	chr7:5569705-5569980(-)$1	275	181	213	12.5586
GCGCCGAGAGUcgcggggcugcggggccgggg	chr19:3700033-3700296(-)$1	263	48	80	10.3402
CACGGGGACCGGACUGCUGGUCCACCUGGCGC	chr9:139560736-139560956(+)$1	220	128	160	11.1700
AGGACUGCGGAGAUCUCCUUGGCGCUGCGGGG	chr2:47402798-47403050(-)$1	252	171	203	10.6837
UGCUGCCCUUGUAGGUGCUUGGGGCAGGCGUU	chr19:2271019-2271288(+)$1	269	161	193	11.8879
UUCGGGCAGUGUAAGAGCAGAUGUGUGAGGUG	chr22:20110999-20111235(+)$1	236	42	74	11.3795
UAUCUUUUCGGUAACUGCUGGGGGGAGCUGGA	chr5:170814956-170815236(+)$1	280	44	76	10.7213
gggugaguggguggggggugggaggccugggu	chr2:97559879-97560169(-)$1	290	7	39	11.7698
CUGUGUUUUGGGGGCACCCGGGGAGGUCUCAG	chr22:50031772-50032103(-)$1	331	99	131	12.1566
GCCGGCCGGGAGGAUGCUCUGGCCAGCCCGGG	chr9:131452335-131452617(+)$1	282	144	176	12.1691
CGCCGGUUCCAGGAGCCUGGGGCGGGGCAGUC	chr19:3699971-3700220(-)$1	249	33	65	11.8309
cugggcgcaccgcucccgggaggguccuggcc	chr19:34287171-34287445(+)$1	274	41	73	10.2491
AGCCCCCGUAUGGGAGCAUGAGGGGGCUGUGG	chr16:1428106-1428336(-)$1	230	53	85	9.9342
GCCGCGCCGGCGGCUGCGUGGGCGGAGUUGGC	chr5:177632280-177632520(+)$1	240	91	123	11.0438
CCGCUUUGUUUGCGUUCAAAUCCCUGGAGCUG	chr2:97534560-97534861(-)$1	301	68	100	10.2569
UUGGGGGGGUGGGGCACCUCCAGCCCCGGCGU	chr19:4037218-4037484(+)$1	266	100	132	11.4822

#DB
(..(((.(((((....))))).)))...))).	chr19:46701109-46701356(-)$1	1	102	134	12.4702
((.(((.(((((....)))))..).)).))))	chr4:79697703-79697963(+)$1	1	133	165	11.3956
(.(((((((((.(....).))).)))))))))	chr17:73775389-73775800(-)$1	1	255	287	9.7283
(((((..(((((....)))))......)))))	chr7:5569877-5570167(-)$1	1	171	203	10.2541
.((((((((((.....)))))))....))).)	chr7:106809585-106809891(+)$1	1	153	185	9.8271
(..(((...(((...)))..)))..)))(((.	chr4:1331596-1331834(+)$1	1	34	66	9.7767
((((.(((((((....)))))))))))).)))	chr7:158621823-158622195(-)$1	1	200	232	11.8480
.(((.(((((((....))))..)))..)))))	chr22:20105396-20105645(+)$1	1	120	152	10.3654
((..((((((.(....).))))))...)))).	chr21:44846348-44846606(-)$1	1	86	118	11.8332
((((((((((((....))))))).))((((((	chr1:154975751-154976020(+)$1	1	90	122	10.7315
((.(((.(((((....))))))))..))))))	chr8:145650750-145651027(-)$1	1	49	81	11.6271
.(((.(((..((....))....))).))).))	chr7:5459902-5460144(-)$1	1	134	166	12.3301
(.((((.(((((....))))).)))).).)))	chr13:92000444-92000677(+)$1	1	120	152	10.2198
.(((....(((((...)))))....))).)))	chr9:136136599-136136828(-)$1	1	74	106	10.0920
((((((((.(((....))).)))))..)))))	chr2:172379370-172379634(+)$1	1	231	263	10.4349
((((.(((((((....)))))))....)))))	chr6:16266313-16266548(+)$1	1	187	219	13.2077
((((((((((((....)))))))))....)))	chr22:50037514-50037815(-)$1	1	208	240	12.3201
((...((((.((....))))))...)))))))	chr21:45734190-45734457(+)$1	1	6	38	12.5162
((((((((((((....))).)..)))))))))	chr20:61484113-61484365(-)$1	1	210	242	12.2906
((....((((((....))))))....))).))	chr19:1409752-1409983(+)$1	1	113	145	12.6430
(..(.(.((((((...)))))).))..)))))	chr19:2270420-2270667(+)$1	1	94	126	9.6457
((((....((((....))))....)).)))).	chr12:109124822-109125061(-)$1	1	110	142	10.2085
(.((.(.(((((....)).))).))))))).)	chr6:52227283-52227557(+)$1	1	59	91	11.4580
((....((((((....))))))...)))))))	chr4:174254962-174255293(-)$1	1	177	209	13.1485
((((..(((.((....)).))).)))))))))	chr19:50190021-50190274(+)$1	1	88	120	12.1999
(....(((((((....)))))))...)))(((	chr18:47340356-47340623(+)$1	1	34	66	13.9596
(((..(((((((....)))))))..))(((((	chr13:92000760-92001000(+)$1	1	153	185	11.4028
((((((.(((((....)).))).).)))))).	chr17:7477067-7477321(+)$1	1	136	168	12.2707
((((((.((.((....)).)).))))))).))	chr9:101867477-101867761(+)$1	1	64	96	11.5913
.((...((((((....)))).))....))...	chr3:9438829-9439066(-)$1	1	182	214	9.9873
(((((((((((((...)))))))..)))))))	chr6:86351858-86352142(-)$1	1	127	159	10.6050
(.(..(((..((....))..)))..).)))))	chr16:85645403-85645694(+)$1	1	42	74	11.8889
.(((.(((((((....))))))).)))(.(((	chr19:2269964-2270232(+)$1	1	86	118	11.4756
((((.(...((((....))))...).))))).	chr19:1408157-1408393(+)$1	1	176	208	9.6041
(((((.(((.((....))))).)))))((.((	chr22:50041211-50041462(-)$1	1	60	92	10.4363
(((((..(((((....)))))..))))))...	chr7:1483133-1483387(-)$1	1	147	179	10.8717
.((((((.(.((...)))))))))....))))	chrX:153991370-153991660(+)$1	1	59	91	9.3001
(.(((.((((((....)))).).).))).)).	chr7:23454478-23454730(-)$1	1	110	142	10.8517
(((((.((((((....))))))))....))))	chr10:43903577-43903851(-)$1	1	73	105	10.3881
((.((((((.((....)).)))))).))).).	chr22:21797710-21797996(+)$1	1	149	181	12.0948
(....(((((((....))))))).)))).(((	chr17:80055695-80055944(-)$1	1	193	225	11.3617
(((.((((((.(....).)))))).)))))((	chr1:1821850-1822078(-)$1	1	76	108	11.0311
(((((((((.((....)))))))))))))(.(	chr9:96929145-96929414(+)$1	1	169	201	13.2714
((((((((((((....)).))))...))))))	chr7:5569705-5569980(-)$1	1	181	213	12.5586
((.(((..((((....)))).))).))..)))	chr19:3700033-3700296(-)$1	1	48	80	10.3402
((.(((((((((....))))))).)))).).)	chr9:139560736-139560956(+)$1	1	128	160	11.1700
((..(((.(((....))).)))..))))))))	chr2:47402798-47403050(-)$1	1	171	203	10.6837
..(((((((.((....))..)))))))..)))	chr19:2271019-2271288(+)$1	1	161	193	11.8879
((((.(((.(((....)))..))).)))((((	chr22:20110999-20111235(+)$1	1	42	74	11.3795
(.((((((((((....))))))))))((((..	chr5:170814956-170815236(+)$1	1	44	76	10.7213
((((...(.(.(....).).)...))))).))	chr2:97559879-97560169(-)$1	1	7	39	11.7698
((...(((((((....)))))))))))).)))	chr22:50031772-50032103(-)$1	1	99	131	12.1566
((.((((((.((....)))))))).))).)))	chr9:131452335-131452617(+)$1	1	144	176	12.1691
(.(((.((((((....)))))))))))).)))	chr19:3699971-3700220(-)$1	1	33	65	11.8309
(.((((.(.(((....)))..).)))).))))	chr19:34287171-34287445(+)$1	1	41	73	10.2491
.((((((.((((....)))).)))))))))))	chr16:1428106-1428336(-)$1	1	53	85	9.9342
((..((((.(((....))).))))..))))))	chr5:177632280-177632520(+)$1	1	91	123	11.0438
((((((((((((....)))))....))))).)	chr2:97534560-97534861(-)$1	1	68	100	10.2569
((((((.((.((....)).))..))))))).)	chr19:4037218-4037484(+)$1	1	100	132	11.4822

#PSSM
c : 0.15	f : 0.13	g : 0.11	d : 0.11	e : 0.08	b : 0.08	[ : 0.05	i : 0.03	# : 0.03	! : 0.03	= : 0.03	B : 0.03	" : 0.01	F : 0.01	a : 0.01	H : 0.01	: : 0.01	
c : 0.18	f : 0.15	g : 0.11	[ : 0.11	e : 0.08	b : 0.08	! : 0.06	d : 0.05	i : 0.03	# : 0.03	= : 0.03	F : 0.01	: : 0.01	
f : 0.15	c : 0.15	! : 0.10	[ : 0.10	e : 0.08	# : 0.06	b : 0.06	g : 0.06	d : 0.05	= : 0.05	i : 0.03	" : 0.03	F : 0.01	a : 0.01	
c : 0.20	f : 0.15	b : 0.10	e : 0.10	! : 0.08	# : 0.06	g : 0.06	i : 0.05	" : 0.05	= : 0.05	d : 0.03	a : 0.01	[ : 0.01	
f : 0.15	[ : 0.15	c : 0.11	# : 0.10	g : 0.08	b : 0.06	" : 0.06	i : 0.05	d : 0.05	e : 0.05	! : 0.05	= : 0.05	
g : 0.23	c : 0.15	f : 0.11	a : 0.08	d : 0.06	# : 0.06	[ : 0.06	! : 0.05	= : 0.05	e : 0.03	i : 0.03	" : 0.03	
g : 0.20	f : 0.18	[ : 0.16	c : 0.11	! : 0.05	" : 0.05	d : 0.05	# : 0.03	e : 0.03	i : 0.03	= : 0.03	b : 0.01	a : 0.01	
g : 0.20	f : 0.16	e : 0.13	c : 0.13	d : 0.05	b : 0.05	[ : 0.05	a : 0.05	" : 0.03	# : 0.03	i : 0.03	= : 0.03	! : 0.01	
g : 0.20	f : 0.15	e : 0.13	d : 0.13	c : 0.10	[ : 0.08	" : 0.03	! : 0.03	a : 0.03	b : 0.03	= : 0.03	i : 0.01	
g : 0.18	c : 0.16	[ : 0.16	e : 0.13	d : 0.13	f : 0.11	! : 0.03	i : 0.01	= : 0.01	a : 0.01	
b : 0.25	g : 0.18	e : 0.13	c : 0.13	d : 0.11	f : 0.08	[ : 0.05	i : 0.01	= : 0.01	
b : 0.25	g : 0.16	e : 0.13	d : 0.11	c : 0.10	f : 0.08	a : 0.05	[ : 0.01	n : 0.01	i : 0.01	m : 0.01	= : 0.01	
m : 0.86	l : 0.03	a : 0.01	n : 0.01	e : 0.01	f : 0.01	g : 0.01	d : 0.01	
m : 0.89	l : 0.08	n : 0.01	
m : 0.89	l : 0.08	n : 0.01	
m : 0.88	l : 0.05	c : 0.03	n : 0.01	b : 0.01	
b : 0.25	g : 0.18	e : 0.13	c : 0.11	d : 0.10	f : 0.08	a : 0.05	m : 0.03	i : 0.01	= : 0.01	
b : 0.23	g : 0.18	e : 0.13	c : 0.11	d : 0.11	f : 0.08	] : 0.05	a : 0.03	i : 0.01	= : 0.01	
g : 0.18	] : 0.15	f : 0.15	e : 0.13	d : 0.13	c : 0.10	2 : 0.05	= : 0.03	4 : 0.01	i : 0.01	a : 0.01	
g : 0.18	f : 0.16	d : 0.15	e : 0.13	c : 0.10	2 : 0.08	] : 0.06	b : 0.03	= : 0.03	4 : 0.01	i : 0.01	
g : 0.20	f : 0.16	e : 0.15	c : 0.13	d : 0.06	] : 0.06	2 : 0.05	4 : 0.03	a : 0.03	b : 0.03	= : 0.03	i : 0.01	
g : 0.20	f : 0.18	c : 0.16	2 : 0.08	] : 0.06	4 : 0.06	d : 0.05	3 : 0.03	a : 0.03	= : 0.03	6 : 0.01	e : 0.01	i : 0.01	b : 0.01	
g : 0.22	c : 0.15	] : 0.11	f : 0.10	2 : 0.08	4 : 0.06	3 : 0.06	d : 0.05	e : 0.03	b : 0.03	= : 0.03	6 : 0.01	i : 0.01	
f : 0.15	c : 0.11	4 : 0.11	3 : 0.10	a : 0.08	2 : 0.08	e : 0.06	] : 0.06	d : 0.05	g : 0.05	i : 0.03	= : 0.03	6 : 0.01	b : 0.01	
4 : 0.13	] : 0.11	2 : 0.10	c : 0.08	f : 0.08	e : 0.08	3 : 0.08	b : 0.06	g : 0.06	d : 0.05	i : 0.03	a : 0.03	= : 0.03	6 : 0.01	
c : 0.13	b : 0.11	4 : 0.11	g : 0.11	f : 0.08	e : 0.08	2 : 0.08	3 : 0.06	] : 0.05	d : 0.05	= : 0.03	6 : 0.01	i : 0.01	a : 0.01	
c : 0.22	g : 0.13	f : 0.10	4 : 0.10	e : 0.10	b : 0.06	d : 0.06	2 : 0.05	] : 0.05	3 : 0.03	= : 0.03	6 : 0.01	i : 0.01	
c : 0.23	f : 0.13	g : 0.11	e : 0.10	d : 0.08	b : 0.08	4 : 0.05	] : 0.03	i : 0.03	a : 0.03	= : 0.03	2 : 0.03	3 : 0.01	
c : 0.15	g : 0.13	f : 0.13	] : 0.13	d : 0.11	e : 0.08	b : 0.08	i : 0.03	= : 0.03	2 : 0.03	4 : 0.01	[ : 0.01	: : 0.01	
d : 0.18	f : 0.15	c : 0.13	e : 0.13	g : 0.11	] : 0.08	i : 0.03	3 : 0.03	b : 0.03	a : 0.03	h : 0.01	[ : 0.01	= : 0.01	
d : 0.20	f : 0.15	e : 0.13	c : 0.10	g : 0.10	] : 0.08	h : 0.05	i : 0.03	b : 0.03	3 : 0.03	a : 0.01	[ : 0.01	= : 0.01	! : 0.01	
d : 0.20	e : 0.15	f : 0.15	] : 0.10	g : 0.08	c : 0.08	h : 0.05	i : 0.03	b : 0.03	3 : 0.03	[ : 0.01	2 : 0.01	= : 0.01	! : 0.01	

#score	664.6012902433811
#seq	59
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_transcript_m3_run1.txt

#BEAR
##ccc[cccpppppppcccccc33	chr12:125269741-125270032(-)$1	291	54	78	16.7612
!ccc!!cccpppppppccc4444c	chr20:62512648-62512918(+)$1	270	103	127	16.6194
g!!a[ddddpppppppdddd]a22	chr10:114804747-114804992(+)$1	245	98	122	16.0317
[dddd[cccpppppppccc]dddd	chr11:8686814-8687085(-)$1	271	7	31	15.5138
eee!!ddddpppppppddddeeee	chr17:75454800-75455054(+)$1	254	18	42	15.1696
b[gggggggpppppppggggggg]	chr2:188406072-188406350(+)$1	278	246	270	15.6534
ee[ccc[bbpppppppbb]ccc]e	chr16:78554617-78554888(+)$1	271	58	82	14.0547
iiiiiiiiipppppppiiiiiiii	chr19:56148894-56149161(+)$1	267	86	110	15.9090
[ccca[cccpppppppccc]a]cc	chr8:129043565-129043836(+)$1	271	162	186	16.3789
fff[a[cccpppppppccc]a]ff	chr19:53938262-53938524(+)$1	262	34	58	15.8111
[a[bb[cccpppppppccc]bb]a	chr19:34876753-34877065(+)$1	312	110	134	15.6242
g[eeeeerrrrrrrrreeeeeggg	chr15:67328290-67328645(-)$1	355	182	206	11.6303
ggg!!ddddpppppppdddd22gg	chr17:27381218-27381573(+)$1	355	42	66	15.7110
fffffcccapppppppa]ccc]ff	chr13:114139714-114140050(-)$1	336	196	220	14.8358
[ccc[ddddpppppppdddd]ccc	chr17:70539051-70539332(-)$1	281	108	132	15.7057
%%gggggggpppppppggggggg5	chr15:57241923-57242261(+)$1	338	64	88	14.1351
ffffffcccpppppppccc]ffff	chr16:52524946-52525228(-)$1	282	175	199	14.9306
:dddd[cccpppppppcccdddd:	chr2:153315318-153315571(+)$1	253	1	25	13.5581
eeeeeeeeepppppppeeeee777	chr17:75423121-75423382(+)$1	261	131	155	13.3463
""eeeeerrrrrrrrreeeee333	chr16:52573530-52573852(-)$1	322	103	127	12.3595
[ccceeeeepppppppeeeee666	chr16:89427642-89427937(-)$1	295	20	44	14.1318
[bb"""cccpppppppccc333bb	chr6:2166923-2167209(-)$1	286	255	279	15.7017
##gggggggpppppppggggggg4	chr19:34873608-34873919(+)$1	311	258	282	16.0803
eee[eeeeepppppppeeeeeeee	chr16:81562936-81563183(+)$1	247	150	174	14.5373
[a!!ccc[apppppppaccc22a]	chr17:80519179-80519565(+)$1	386	314	338	16.1436
dddd!!cccpppppppcccdddd4	chr16:31198642-31198893(+)$1	251	113	137	15.6717
hh[a[ddddpppppppdddd]a22	chrX:131610403-131610689(-)$1	286	86	110	15.3917
dddd!!cccpppppppcccdddd:	chr16:31198540-31198842(+)$1	302	215	239	14.7090
eeee[ddddpppppppdddd]eee	chr13:51136403-51136656(+)$1	253	183	207	15.0439
h!!ffffffpppppppffffff22	chr2:236432202-236432449(+)$1	247	169	193	14.3103
[bb"""cccpppppppccc333bb	chr17:70538609-70538885(-)$1	276	79	103	15.7017
ddddbbcccpppppppccc]bb]d	chr2:173472384-173472693(+)$1	309	147	171	14.3634
f"""eeeeepppppppeeeeefff	chr19:35497776-35498096(+)$1	320	206	230	14.8739
=========ppppppp========	chr18:55712826-55713091(+)$1	265	54	78	16.4735
!!ddddcccpppppppccc]dddd	chr8:62567160-62567456(-)$1	296	74	98	15.6981
gggggggrrrrrrrrrgggggggh	chr1:245024116-245024358(-)$1	242	25	49	11.8063
c!!ffffffpppppppffffff22	chr14:21727676-21727934(-)$1	258	19	43	14.4189
$$$$$ddddpppppppddddiiii	chr16:81590102-81590405(+)$1	303	23	47	15.0111
iiiiiii[apppppppa]iiiiii	chr13:113394179-113394471(+)$1	292	114	138	15.8673
$$gggggggpppppppgggggggh	chr16:31199149-31199406(+)$1	257	14	38	15.3439
dd[eeeeerrrrrrrrreeeee]d	chr15:67372637-67372902(+)$1	265	134	158	11.0457
""gggggggpppppppgggggggf	chr2:26266513-26266791(+)$1	278	197	221	15.8946
!!a!!ddddpppppppdddd22a4	chr3:171847710-171848005(+)$1	295	205	229	16.0769
eeee!!cccpppppppccc4444e	chr2:207022866-207023188(-)$1	322	44	68	16.1345
ii!!bb!!apppppppa22bb]ii	chr10:77397106-77397369(+)$1	263	126	150	14.0684
iiiiiiiiipppppppiiiiiiii	chr11:102053893-102054154(+)$1	261	206	230	15.9090
c####ddddpppppppdddd]ccc	chr17:55614192-55614532(+)$1	340	144	168	15.6160
d[dddd[bbpppppppbb]dddd]	chr2:101519962-101520219(+)$1	257	160	184	13.7572
""eeeeerrrrrrrrreeeee333	chr8:124407508-124407820(-)$1	312	200	224	12.3595
bb[dddd[apppppppaddddbb:	chr12:57558847-57559114(+)$1	267	183	207	13.4211
ggg[ddddrrrrrrrrrddddggg	chr1:2324168-2324419(+)$1	251	36	60	11.8356
=========ppppppp========	chr6:166750772-166751061(-)$1	289	247	271	16.4735
ggggg[cccpppppppcccggggg	chr19:34882771-34883023(+)$1	252	66	90	16.4789
eeee[ddddrrrrrrrrrdddd22	chr19:1410339-1410596(+)$1	257	132	156	11.2601
ggggg[cccpppppppcccggggg	chr19:34882823-34883099(+)$1	276	14	38	16.4789

#otherMatches

#Seq PSSM
aggcccuguggcagggacaggcaa	chr12:125269741-125270032(-)$1	291	54	78	16.7612
CCUUGGGCCGGGGGCGGGCAUGAG	chr20:62512648-62512918(+)$1	270	103	127	16.6194
agcagguuugggguggaagCGUUG	chr10:114804747-114804992(+)$1	245	98	122	16.0317
agagcccuugacuucaaagagcuc	chr11:8686814-8687085(-)$1	271	7	31	15.5138
GGAGCAUGCAAGAUGGGCAUUCCU	chr17:75454800-75455054(+)$1	254	18	42	15.1696
aggagacaaacgaucauuguuucg	chr2:188406072-188406350(+)$1	278	246	270	15.6534
AACAUCUGUGAUGAGGACUGAUUU	chr16:78554617-78554888(+)$1	271	58	82	14.0547
GGCGUAAGUGGUGGUGGUUUGCGC	chr19:56148894-56149161(+)$1	267	86	110	15.9090
UGGUAUUGCGUAcaaagcauuaac	chr8:129043565-129043836(+)$1	271	162	186	16.3789
agucuggcuuuagaauggugaaau	chr19:53938262-53938524(+)$1	262	34	58	15.8111
AGGUCAACUACAGGUAGGUAGAGC	chr19:34876753-34877065(+)$1	312	110	134	15.6242
GCUUCCUUCAGCAGUCAGGAACUU	chr15:67328290-67328645(-)$1	355	182	206	11.6303
aagcacucaauaaaCCUGAGGUCU	chr17:27381218-27381573(+)$1	355	42	66	15.7110
agaagggucuguaucuguaccacu	chr13:114139714-114140050(-)$1	336	196	220	14.8358
AUGGUGGUGGGAAGGGCACUCUCA	chr17:70539051-70539332(-)$1	281	108	132	15.7057
uucuuuaauagaaaugguuaaagu	chr15:57241923-57242261(+)$1	338	64	88	14.1351
UAUAAACAAAGUGAUGUUGAUUUG	chr16:52524946-52525228(-)$1	282	175	199	14.9306
GCAUCAUGCUUUACAUGUAGGUGG	chr2:153315318-153315571(+)$1	253	1	25	13.5581
CCGGAGGUGGGAGACACACCUGUG	chr17:75423121-75423382(+)$1	261	131	155	13.3463
GAAUUUGGGGCCUGGACGAAUGGU	chr16:52573530-52573852(-)$1	322	103	127	12.3595
AAUGGCUUGGGAUAUGUAAGUAUG	chr16:89427642-89427937(-)$1	295	20	44	14.1318
agcaugcuuuuggaguaagauagc	chr6:2166923-2167209(-)$1	286	255	279	15.7017
GAUAGGAGCAGGCGAAGUUCCUGC	chr19:34873608-34873919(+)$1	311	258	282	16.0803
GAGAUCUGugugguggacagacuc	chr16:81562936-81563183(+)$1	247	150	174	14.5373
GUGCCUCACGGGGAAAGGAGAAGG	chr17:80519179-80519565(+)$1	386	314	338	16.1436
GGCUCAUGGGAAAUAACCAGGUCU	chr16:31198642-31198893(+)$1	251	113	137	15.6717
GUAAGUGGAAAUUUCCUUCAGUAG	chrX:131610403-131610689(-)$1	286	86	110	15.3917
GGCUCAUGGGAAAUAACCAGGUCU	chr16:31198540-31198842(+)$1	302	215	239	14.7090
UUUGAacuggcagcaacggugcag	chr13:51136403-51136656(+)$1	253	183	207	15.0439
GGUGGCCUUGGGUCGAAAGGCCGA	chr2:236432202-236432449(+)$1	247	169	193	14.3103
gaggaacacagacaaaguggggcu	chr17:70538609-70538885(-)$1	276	79	103	15.7017
CAGAGUAGUGUUGAUAACUGGCAU	chr2:173472384-173472693(+)$1	309	147	171	14.3634
caaaucaccacaccaaggugaggu	chr19:35497776-35498096(+)$1	320	206	230	14.8739
CUUGUCGCGGGCGCGGCGUGACAG	chr18:55712826-55713091(+)$1	265	54	78	16.4735
GAACACAACUGUAUGUGUUGGUGU	chr8:62567160-62567456(-)$1	296	74	98	15.6981
AAUGCUGCACUAUUAACAGCAUUA	chr1:245024116-245024358(-)$1	242	25	49	11.8063
AGAUUAAUAAAGGAGAUAUUAAAA	chr14:21727676-21727934(-)$1	258	19	43	14.4189
caguggcccuccuaaugggcauga	chr16:81590102-81590405(+)$1	303	23	47	15.0111
cgugggagcgacuguaggucuugu	chr13:113394179-113394471(+)$1	292	114	138	15.8673
GAUGGUUUCUAAAGAUGAAAUUAA	chr16:31199149-31199406(+)$1	257	14	38	15.3439
GGCAGGGCAUUCACGUGGCUCUAC	chr15:67372637-67372902(+)$1	265	134	158	11.0457
auuaauuuaaugccaaugaauugu	chr2:26266513-26266791(+)$1	278	197	221	15.8946
UUCAUGUCUGCUGUCAGGACCGGU	chr3:171847710-171848005(+)$1	295	205	229	16.0769
gccuggucaaugaaacugagaaaa	chr2:207022866-207023188(-)$1	322	44	68	16.1345
gagggagaCAUGGGGAGCAUCAUU	chr10:77397106-77397369(+)$1	263	126	150	14.0684
UGGAGAGCAAUAGGAAUGUUCUUU	chr11:102053893-102054154(+)$1	261	206	230	15.9090
GAGAAUGGGGUAGAAACUCAAUAU	chr17:55614192-55614532(+)$1	340	144	168	15.6160
CAGUGGUGAUUCAGCUUCUCCAUG	chr2:101519962-101520219(+)$1	257	160	184	13.7572
AGUGCAGUGACGGUUUUUGCAGGG	chr8:124407508-124407820(-)$1	312	200	224	12.3595
gcacuuguggagguuaccaaggca	chr12:57558847-57559114(+)$1	267	183	207	13.4211
CGUAUGCCUGAGGUGACGGCGACG	chr1:2324168-2324419(+)$1	251	36	60	11.8356
GUUUCAGCCAGGGGAGGGCUGAAG	chr6:166750772-166751061(-)$1	289	247	271	16.4735
AUGUCUGGAGGUAAGAUCUGGCAU	chr19:34882771-34883023(+)$1	252	66	90	16.4789
CUGGAGCGCUCAGAGCACGCGCGA	chr19:1410339-1410596(+)$1	257	132	156	11.2601
AUGUCUGGAGGUAAGAUCUGGCAU	chr19:34882823-34883099(+)$1	276	14	38	16.4789

#DB
..(((.(((.......))))))..	chr12:125269741-125270032(-)$1	1	54	78	16.7612
.(((..(((.......)))....)	chr20:62512648-62512918(+)$1	1	103	127	16.6194
(..(.((((.......)))).)..	chr10:114804747-114804992(+)$1	1	98	122	16.0317
.((((.(((.......))).))))	chr11:8686814-8687085(-)$1	1	7	31	15.5138
(((..((((.......))))))))	chr17:75454800-75455054(+)$1	1	18	42	15.1696
(.(((((((.......))))))).	chr2:188406072-188406350(+)$1	1	246	270	15.6534
((.(((.((.......)).))).)	chr16:78554617-78554888(+)$1	1	58	82	14.0547
(((((((((.......))))))))	chr19:56148894-56149161(+)$1	1	86	110	15.9090
.((((.(((.......))).).))	chr8:129043565-129043836(+)$1	1	162	186	16.3789
(((.(.(((.......))).).))	chr19:53938262-53938524(+)$1	1	34	58	15.8111
.(.((.(((.......))).)).)	chr19:34876753-34877065(+)$1	1	110	134	15.6242
(.(((((.........))))))))	chr15:67328290-67328645(-)$1	1	182	206	11.6303
(((..((((.......))))..))	chr17:27381218-27381573(+)$1	1	42	66	15.7110
(((((((((.......).))).))	chr13:114139714-114140050(-)$1	1	196	220	14.8358
.(((.((((.......)))).)))	chr17:70539051-70539332(-)$1	1	108	132	15.7057
..(((((((.......))))))).	chr15:57241923-57242261(+)$1	1	64	88	14.1351
(((((((((.......))).))))	chr16:52524946-52525228(-)$1	1	175	199	14.9306
.((((.(((.......))))))).	chr2:153315318-153315571(+)$1	1	1	25	13.5581
(((((((((.......)))))...	chr17:75423121-75423382(+)$1	1	131	155	13.3463
..(((((.........)))))...	chr16:52573530-52573852(-)$1	1	103	127	12.3595
.((((((((.......)))))...	chr16:89427642-89427937(-)$1	1	20	44	14.1318
.((...(((.......)))...))	chr6:2166923-2167209(-)$1	1	255	279	15.7017
..(((((((.......))))))).	chr19:34873608-34873919(+)$1	1	258	282	16.0803
(((.(((((.......))))))))	chr16:81562936-81563183(+)$1	1	150	174	14.5373
.(..(((.(.......))))..).	chr17:80519179-80519565(+)$1	1	314	338	16.1436
((((..(((.......))))))).	chr16:31198642-31198893(+)$1	1	113	137	15.6717
((.(.((((.......)))).)..	chrX:131610403-131610689(-)$1	1	86	110	15.3917
((((..(((.......))))))).	chr16:31198540-31198842(+)$1	1	215	239	14.7090
((((.((((.......)))).)))	chr13:51136403-51136656(+)$1	1	183	207	15.0439
(..((((((.......))))))..	chr2:236432202-236432449(+)$1	1	169	193	14.3103
.((...(((.......)))...))	chr17:70538609-70538885(-)$1	1	79	103	15.7017
(((((((((.......))).)).)	chr2:173472384-173472693(+)$1	1	147	171	14.3634
(...(((((.......))))))))	chr19:35497776-35498096(+)$1	1	206	230	14.8739
(((((((((.......))))))))	chr18:55712826-55713091(+)$1	1	54	78	16.4735
..(((((((.......))).))))	chr8:62567160-62567456(-)$1	1	74	98	15.6981
(((((((.........)))))))(	chr1:245024116-245024358(-)$1	1	25	49	11.8063
(..((((((.......))))))..	chr14:21727676-21727934(-)$1	1	19	43	14.4189
.....((((.......))))))))	chr16:81590102-81590405(+)$1	1	23	47	15.0111
(((((((.(.......).))))))	chr13:113394179-113394471(+)$1	1	114	138	15.8673
..(((((((.......))))))))	chr16:31199149-31199406(+)$1	1	14	38	15.3439
((.(((((.........))))).)	chr15:67372637-67372902(+)$1	1	134	158	11.0457
..(((((((.......))))))))	chr2:26266513-26266791(+)$1	1	197	221	15.8946
..(..((((.......))))..).	chr3:171847710-171848005(+)$1	1	205	229	16.0769
((((..(((.......)))....)	chr2:207022866-207023188(-)$1	1	44	68	16.1345
((..((..(.......)..)).))	chr10:77397106-77397369(+)$1	1	126	150	14.0684
(((((((((.......))))))))	chr11:102053893-102054154(+)$1	1	206	230	15.9090
(....((((.......)))).)))	chr17:55614192-55614532(+)$1	1	144	168	15.6160
(.((((.((.......)).)))).	chr2:101519962-101520219(+)$1	1	160	184	13.7572
..(((((.........)))))...	chr8:124407508-124407820(-)$1	1	200	224	12.3595
((.((((.(.......))))))).	chr12:57558847-57559114(+)$1	1	183	207	13.4211
(((.((((.........)))))))	chr1:2324168-2324419(+)$1	1	36	60	11.8356
(((((((((.......))))))))	chr6:166750772-166751061(-)$1	1	247	271	16.4735
(((((.(((.......))))))))	chr19:34882771-34883023(+)$1	1	66	90	16.4789
((((.((((.........))))..	chr19:1410339-1410596(+)$1	1	132	156	11.2601
(((((.(((.......))))))))	chr19:34882823-34883099(+)$1	1	14	38	16.4789

#PSSM
[ : 0.14	g : 0.12	e : 0.12	d : 0.09	i : 0.07	f : 0.07	! : 0.05	" : 0.05	# : 0.03	b : 0.03	h : 0.03	= : 0.03	c : 0.03	$ : 0.03	% : 0.01	: : 0.01	
e : 0.12	d : 0.10	! : 0.09	g : 0.09	c : 0.07	i : 0.07	" : 0.07	# : 0.05	[ : 0.05	f : 0.05	b : 0.05	a : 0.03	= : 0.03	$ : 0.03	% : 0.01	h : 0.01	
g : 0.18	e : 0.16	d : 0.12	c : 0.09	! : 0.09	[ : 0.09	i : 0.05	f : 0.05	b : 0.03	= : 0.03	" : 0.01	$ : 0.01	a : 0.01	# : 0.01	
d : 0.14	g : 0.14	e : 0.14	c : 0.10	! : 0.09	f : 0.07	i : 0.05	[ : 0.05	" : 0.05	a : 0.03	= : 0.03	b : 0.01	$ : 0.01	# : 0.01	
g : 0.14	e : 0.14	! : 0.12	d : 0.10	[ : 0.09	f : 0.07	c : 0.05	i : 0.05	b : 0.05	a : 0.03	" : 0.03	= : 0.03	$ : 0.01	# : 0.01	
d : 0.25	[ : 0.14	e : 0.14	g : 0.10	! : 0.07	c : 0.05	i : 0.05	f : 0.05	" : 0.03	b : 0.03	= : 0.03	
c : 0.34	d : 0.21	e : 0.14	g : 0.10	i : 0.05	[ : 0.03	f : 0.03	= : 0.03	! : 0.01	
c : 0.32	d : 0.20	g : 0.09	e : 0.09	r : 0.07	[ : 0.05	b : 0.03	i : 0.03	f : 0.03	= : 0.03	! : 0.01	
c : 0.30	d : 0.18	r : 0.10	g : 0.09	a : 0.09	e : 0.07	b : 0.03	i : 0.03	f : 0.03	= : 0.03	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
c : 0.30	d : 0.16	e : 0.12	g : 0.10	a : 0.09	r : 0.05	b : 0.03	i : 0.03	f : 0.03	= : 0.03	
c : 0.32	d : 0.20	e : 0.14	g : 0.10	b : 0.03	i : 0.03	] : 0.03	f : 0.03	= : 0.03	2 : 0.01	r : 0.01	
c : 0.34	d : 0.21	e : 0.14	g : 0.10	i : 0.05	] : 0.03	f : 0.03	= : 0.03	2 : 0.01	
d : 0.29	g : 0.14	e : 0.14	] : 0.12	c : 0.07	i : 0.05	4 : 0.03	3 : 0.03	f : 0.03	= : 0.03	b : 0.01	
d : 0.16	e : 0.16	g : 0.14	] : 0.09	i : 0.07	c : 0.05	b : 0.05	2 : 0.05	f : 0.05	4 : 0.03	a : 0.03	3 : 0.03	= : 0.03	
g : 0.18	d : 0.12	c : 0.07	e : 0.07	i : 0.07	] : 0.07	f : 0.07	3 : 0.07	b : 0.05	2 : 0.05	4 : 0.03	a : 0.03	= : 0.03	7 : 0.01	6 : 0.01	
g : 0.20	d : 0.10	2 : 0.09	i : 0.09	] : 0.07	f : 0.07	3 : 0.05	e : 0.05	c : 0.05	b : 0.05	4 : 0.03	a : 0.03	= : 0.03	7 : 0.01	6 : 0.01	
2 : 0.09	e : 0.09	i : 0.09	f : 0.09	g : 0.09	c : 0.07	d : 0.07	3 : 0.05	] : 0.05	: : 0.05	4 : 0.05	b : 0.03	= : 0.03	h : 0.03	a : 0.01	5 : 0.01	7 : 0.01	6 : 0.01	

#score	817.831658419535
#seq	55
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_UTR_m1_run1.txt

#BEAR
cccooooooccc	chr11:2152713-2152918(-)$1	205	3	15	11.6038
dddooooooddd	chr19:18392268-18392526(-)$1	258	89	101	9.7266
cccooooooccc	chr11:2152718-2152924(-)$1	206	9	21	11.6038
cccooooooccc	chr16:87902809-87903179(-)$1	370	164	176	11.6038
cccooooooccc	chr11:2152536-2152745(-)$1	209	54	66	11.6038
cccooooooccc	chr2:232577051-232577316(+)$1	265	194	206	11.6038
cccooooooccc	chr1:27022751-27023051(+)$1	300	211	223	11.6038
cccooooooccc	chr12:111180423-111180683(-)$1	260	39	51	11.6038
cccooooooccc	chr1:150947128-150947402(-)$1	274	252	264	11.6038
dddooooooddd	chr17:4575245-4575587(-)$1	342	52	64	9.7266
cccooooooccc	chr11:2153074-2153298(-)$1	224	91	103	11.6038
cccooooooccc	chr9:35731968-35732270(-)$1	302	251	263	11.6038
gggooooooggg	chr5:171710612-171710980(-)$1	368	4	16	9.8398
[bboooooobb]	chr12:133067023-133067339(+)$1	316	35	47	9.2224
hhhoooooohhh	chr17:27420233-27420531(-)$1	298	56	68	9.7209
dddooooooddd	chr10:105614882-105615357(-)$1	475	299	311	9.7266
cccooooooccc	chr11:2152615-2152817(-)$1	202	28	40	11.6038
cccooooooccc	chr11:2153149-2153359(-)$1	210	9	21	11.6038
hhhoooooohhh	chr17:42276862-42277120(-)$1	258	78	90	9.7209
gggooooooggg	chr6:167369867-167370136(-)$1	269	108	120	9.8398
cccooooooccc	chr2:232577116-232577327(+)$1	211	116	128	11.6038
cccooooooccc	chr11:2152823-2153026(-)$1	203	111	123	11.6038
cccooooooccc	chr16:22385523-22385861(-)$1	338	34	46	11.6038
cccooooooccc	chr19:50016430-50016714(+)$1	284	89	101	11.6038
dddooooooddd	chr20:39766141-39766435(+)$1	294	153	165	9.7266
[bboooooobb]	chr16:9057189-9057444(-)$1	255	98	110	9.2224
cccooooooccc	chr11:2153124-2153332(-)$1	208	125	137	11.6038
cccooooooccc	chr11:2152593-2152798(-)$1	205	9	21	11.6038
dddooooooddd	chr19:531688-532046(+)$1	358	270	282	9.7266
cccooooooccc	chr11:2152648-2152852(-)$1	204	63	75	11.6038
dddooooooddd	chr11:2151879-2152103(-)$1	224	119	131	9.7266
cccooooooccc	chr11:2152850-2153055(-)$1	205	61	73	11.6038
cccooooooccc	chr11:2152909-2153124(-)$1	215	130	142	11.6038
cccooooooccc	chr11:2152728-2152951(-)$1	223	36	48	11.6038
dddooooooddd	chr10:98346576-98346890(-)$1	314	118	130	9.7266
cccooooooccc	chr11:2152816-2153021(-)$1	205	106	118	11.6038
cccooooooccc	chr19:1941219-1941511(+)$1	292	25	37	11.6038
cccooooooccc	chr12:49350987-49351329(-)$1	342	271	283	11.6038
cbboooooobb]	chr2:54197742-54198040(-)$1	298	199	211	9.5309
cccooooooccc	chr11:2153132-2153347(-)$1	215	140	152	11.6038
cccooooooccc	chr7:134632375-134632621(+)$1	246	133	145	11.6038
cccooooooccc	chr11:2152688-2152909(-)$1	221	120	132	11.6038
cccooooooccc	chr11:2152840-2153050(-)$1	210	56	68	11.6038
cccooooooccc	chr5:76989032-76989279(-)$1	247	191	203	11.6038
dddooooooddd	chr10:102759453-102759750(+)$1	297	75	87	9.7266
cccooooooccc	chr11:2152607-2152815(-)$1	208	124	136	11.6038
cccooooooccc	chr20:57466548-57466895(+)$1	347	130	142	11.6038
"bboooooobb4	chr17:37054565-37054878(+)$1	313	94	106	9.1663
cccooooooccc	chr11:2152666-2152876(-)$1	210	87	99	11.6038
[bboooooobb]	chr18:77711466-77711732(-)$1	266	112	124	9.2224
hhhoooooohhh	chr17:48784871-48785244(-)$1	373	10	22	9.7209
cccooooooccc	chr2:232327856-232328127(-)$1	271	122	134	11.6038
cccooooooccc	chr11:2153030-2153240(-)$1	210	33	45	11.6038
!!aooooooa22	chr8:126010697-126010976(+)$1	279	254	266	9.0940
cccooooooccc	chr17:48943258-48943624(-)$1	366	27	39	11.6038
cccooooooccc	chr11:2152767-2152975(-)$1	208	60	72	11.6038
cccooooooccc	chr22:19166061-19166345(-)$1	284	251	263	11.6038
cccooooooccc	chr11:2152617-2152822(-)$1	205	33	45	11.6038
cccooooooccc	chr16:28222924-28223205(-)$1	281	65	77	11.6038

#otherMatches

#Seq PSSM
gcacacacaugc	chr11:2152713-2152918(-)$1	205	3	15	11.6038
GGCGCAGGAGCC	chr19:18392268-18392526(-)$1	258	89	101	9.7266
gcacacacaugc	chr11:2152718-2152924(-)$1	206	9	21	11.6038
GCCCGAAGCGGC	chr16:87902809-87903179(-)$1	370	164	176	11.6038
gcacccaccugc	chr11:2152536-2152745(-)$1	209	54	66	11.6038
GAAGGGGGGUUU	chr2:232577051-232577316(+)$1	265	194	206	11.6038
GCUGAAGAAAGC	chr1:27022751-27023051(+)$1	300	211	223	11.6038
GGGGGGGGACcc	chr12:111180423-111180683(-)$1	260	39	51	11.6038
CCGAGCAGACGG	chr1:150947128-150947402(-)$1	274	252	264	11.6038
agaggaauauuu	chr17:4575245-4575587(-)$1	342	52	64	9.7266
gcacacacaugc	chr11:2153074-2153298(-)$1	224	91	103	11.6038
ccccggggcggg	chr9:35731968-35732270(-)$1	302	251	263	11.6038
ggcgcugcggcc	chr5:171710612-171710980(-)$1	368	4	16	9.8398
acucagcccggc	chr12:133067023-133067339(+)$1	316	35	47	9.2224
GGACGGGUCUCU	chr17:27420233-27420531(-)$1	298	56	68	9.7209
GCCGCCGGGGGC	chr10:105614882-105615357(-)$1	475	299	311	9.7266
gcacacacaugc	chr11:2152615-2152817(-)$1	202	28	40	11.6038
UGCAUCCCCGCA	chr11:2153149-2153359(-)$1	210	9	21	11.6038
GCCCGGUGAggc	chr17:42276862-42277120(-)$1	258	78	90	9.7209
ACUGACCGUGGU	chr6:167369867-167370136(-)$1	269	108	120	9.8398
UCUGGCUUGAGA	chr2:232577116-232577327(+)$1	211	116	128	11.6038
gcacacacaugc	chr11:2152823-2153026(-)$1	203	111	123	11.6038
CGAGGCGAGUCG	chr16:22385523-22385861(-)$1	338	34	46	11.6038
GUCAGUCUGGAC	chr19:50016430-50016714(+)$1	284	89	101	11.6038
CGUCCCCUUGCG	chr20:39766141-39766435(+)$1	294	153	165	9.7266
AGCAAGUACGUG	chr16:9057189-9057444(-)$1	255	98	110	9.2224
gcacacacaugc	chr11:2153124-2153332(-)$1	208	125	137	11.6038
gcacacacaugc	chr11:2152593-2152798(-)$1	205	9	21	11.6038
CAGAAGGCGCUG	chr19:531688-532046(+)$1	358	270	282	9.7266
gcacacacaugc	chr11:2152648-2152852(-)$1	204	63	75	11.6038
UCUGGGGUAGGA	chr11:2151879-2152103(-)$1	224	119	131	9.7266
gcacacacaugc	chr11:2152850-2153055(-)$1	205	61	73	11.6038
gcacacacaugc	chr11:2152909-2153124(-)$1	215	130	142	11.6038
gcacacacaugc	chr11:2152728-2152951(-)$1	223	36	48	11.6038
CUCAGGAGCGgg	chr10:98346576-98346890(-)$1	314	118	130	9.7266
gcacacacaugc	chr11:2152816-2153021(-)$1	205	106	118	11.6038
CCGAACAUGCGG	chr19:1941219-1941511(+)$1	292	25	37	11.6038
GAGAAGAGGCUC	chr12:49350987-49351329(-)$1	342	271	283	11.6038
CCCGCAGAAGGA	chr2:54197742-54198040(-)$1	298	199	211	9.5309
gcacacacaugc	chr11:2153132-2153347(-)$1	215	140	152	11.6038
CUCAGAGAGGAG	chr7:134632375-134632621(+)$1	246	133	145	11.6038
gcacacacaugc	chr11:2152688-2152909(-)$1	221	120	132	11.6038
gcacacacaugc	chr11:2152840-2153050(-)$1	210	56	68	11.6038
AAGCAAAGACUU	chr5:76989032-76989279(-)$1	247	191	203	11.6038
gcuggccagggc	chr10:102759453-102759750(+)$1	297	75	87	9.7266
gcacccaccugc	chr11:2152607-2152815(-)$1	208	124	136	11.6038
ggcccgcccgcc	chr20:57466548-57466895(+)$1	347	130	142	11.6038
UGCAGGUGCGCU	chr17:37054565-37054878(+)$1	313	94	106	9.1663
gcacacacaugc	chr11:2152666-2152876(-)$1	210	87	99	11.6038
gcggggacgcgg	chr18:77711466-77711732(-)$1	266	112	124	9.2224
GGGAGGAGGCCU	chr17:48784871-48785244(-)$1	373	10	22	9.7209
CCAAGAAAAUGG	chr2:232327856-232328127(-)$1	271	122	134	11.6038
gcacacacaugc	chr11:2153030-2153240(-)$1	210	33	45	11.6038
AGCGAAACGGGA	chr8:126010697-126010976(+)$1	279	254	266	9.0940
GCCACUAACGGC	chr17:48943258-48943624(-)$1	366	27	39	11.6038
gcacacacaugc	chr11:2152767-2152975(-)$1	208	60	72	11.6038
AGGUGGGCCCCU	chr22:19166061-19166345(-)$1	284	251	263	11.6038
gcacacacaugc	chr11:2152617-2152822(-)$1	205	33	45	11.6038
CUCUCCCCUGAG	chr16:28222924-28223205(-)$1	281	65	77	11.6038

#DB
(((......)))	chr11:2152713-2152918(-)$1	1	3	15	11.6038
(((......)))	chr19:18392268-18392526(-)$1	1	89	101	9.7266
(((......)))	chr11:2152718-2152924(-)$1	1	9	21	11.6038
(((......)))	chr16:87902809-87903179(-)$1	1	164	176	11.6038
(((......)))	chr11:2152536-2152745(-)$1	1	54	66	11.6038
(((......)))	chr2:232577051-232577316(+)$1	1	194	206	11.6038
(((......)))	chr1:27022751-27023051(+)$1	1	211	223	11.6038
(((......)))	chr12:111180423-111180683(-)$1	1	39	51	11.6038
(((......)))	chr1:150947128-150947402(-)$1	1	252	264	11.6038
(((......)))	chr17:4575245-4575587(-)$1	1	52	64	9.7266
(((......)))	chr11:2153074-2153298(-)$1	1	91	103	11.6038
(((......)))	chr9:35731968-35732270(-)$1	1	251	263	11.6038
(((......)))	chr5:171710612-171710980(-)$1	1	4	16	9.8398
.((......)).	chr12:133067023-133067339(+)$1	1	35	47	9.2224
(((......)))	chr17:27420233-27420531(-)$1	1	56	68	9.7209
(((......)))	chr10:105614882-105615357(-)$1	1	299	311	9.7266
(((......)))	chr11:2152615-2152817(-)$1	1	28	40	11.6038
(((......)))	chr11:2153149-2153359(-)$1	1	9	21	11.6038
(((......)))	chr17:42276862-42277120(-)$1	1	78	90	9.7209
(((......)))	chr6:167369867-167370136(-)$1	1	108	120	9.8398
(((......)))	chr2:232577116-232577327(+)$1	1	116	128	11.6038
(((......)))	chr11:2152823-2153026(-)$1	1	111	123	11.6038
(((......)))	chr16:22385523-22385861(-)$1	1	34	46	11.6038
(((......)))	chr19:50016430-50016714(+)$1	1	89	101	11.6038
(((......)))	chr20:39766141-39766435(+)$1	1	153	165	9.7266
.((......)).	chr16:9057189-9057444(-)$1	1	98	110	9.2224
(((......)))	chr11:2153124-2153332(-)$1	1	125	137	11.6038
(((......)))	chr11:2152593-2152798(-)$1	1	9	21	11.6038
(((......)))	chr19:531688-532046(+)$1	1	270	282	9.7266
(((......)))	chr11:2152648-2152852(-)$1	1	63	75	11.6038
(((......)))	chr11:2151879-2152103(-)$1	1	119	131	9.7266
(((......)))	chr11:2152850-2153055(-)$1	1	61	73	11.6038
(((......)))	chr11:2152909-2153124(-)$1	1	130	142	11.6038
(((......)))	chr11:2152728-2152951(-)$1	1	36	48	11.6038
(((......)))	chr10:98346576-98346890(-)$1	1	118	130	9.7266
(((......)))	chr11:2152816-2153021(-)$1	1	106	118	11.6038
(((......)))	chr19:1941219-1941511(+)$1	1	25	37	11.6038
(((......)))	chr12:49350987-49351329(-)$1	1	271	283	11.6038
(((......)).	chr2:54197742-54198040(-)$1	1	199	211	9.5309
(((......)))	chr11:2153132-2153347(-)$1	1	140	152	11.6038
(((......)))	chr7:134632375-134632621(+)$1	1	133	145	11.6038
(((......)))	chr11:2152688-2152909(-)$1	1	120	132	11.6038
(((......)))	chr11:2152840-2153050(-)$1	1	56	68	11.6038
(((......)))	chr5:76989032-76989279(-)$1	1	191	203	11.6038
(((......)))	chr10:102759453-102759750(+)$1	1	75	87	9.7266
(((......)))	chr11:2152607-2152815(-)$1	1	124	136	11.6038
(((......)))	chr20:57466548-57466895(+)$1	1	130	142	11.6038
.((......)).	chr17:37054565-37054878(+)$1	1	94	106	9.1663
(((......)))	chr11:2152666-2152876(-)$1	1	87	99	11.6038
.((......)).	chr18:77711466-77711732(-)$1	1	112	124	9.2224
(((......)))	chr17:48784871-48785244(-)$1	1	10	22	9.7209
(((......)))	chr2:232327856-232328127(-)$1	1	122	134	11.6038
(((......)))	chr11:2153030-2153240(-)$1	1	33	45	11.6038
..(......)..	chr8:126010697-126010976(+)$1	1	254	266	9.0940
(((......)))	chr17:48943258-48943624(-)$1	1	27	39	11.6038
(((......)))	chr11:2152767-2152975(-)$1	1	60	72	11.6038
(((......)))	chr22:19166061-19166345(-)$1	1	251	263	11.6038
(((......)))	chr11:2152617-2152822(-)$1	1	33	45	11.6038
(((......)))	chr16:28222924-28223205(-)$1	1	65	77	11.6038

#PSSM
c : 0.69	d : 0.13	[ : 0.05	h : 0.05	g : 0.03	" : 0.01	! : 0.01	
c : 0.67	d : 0.13	b : 0.08	h : 0.05	g : 0.03	! : 0.01	
c : 0.67	d : 0.13	b : 0.08	h : 0.05	g : 0.03	a : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.67	d : 0.13	b : 0.08	h : 0.05	g : 0.03	a : 0.01	
c : 0.67	d : 0.13	b : 0.08	h : 0.05	g : 0.03	2 : 0.01	
c : 0.67	d : 0.13	] : 0.06	h : 0.05	g : 0.03	4 : 0.01	2 : 0.01	

#score	646.2696774607654
#seq	59
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_transcript_m2_run2.txt

#BEAR
d[bb!!a[bb[bboooooobb]bb]a333bb]d	chr17:4755980-4756271(+)$1	291	214	247	9.3964
:ddddeeeee[cccooooooccc]eeeee]ddd	chr11:374224-374476(+)$1	252	50	83	9.4537
eeeee[gggggggrrrrrrrrrgggggggeeee	chr15:69110936-69111189(-)$1	253	219	252	9.5545
ddd:==========lll==========ffffff	chr2:61764233-61764522(-)$1	289	133	166	12.0565
ggggggg[eeeeellleeeee]ggggggg22dd	chr8:113382265-113382468(-)$1	203	51	84	9.1853
cc[==========lll==========ccc]ccc	chr12:109124510-109124804(-)$1	294	32	65	13.0528
eeeegggggggcccmmmmccc]ggggggg:fff	chr17:66042689-66042975(+)$1	286	177	210	12.0531
ffffff"""a[cccmmmmccc]a333ffffffg	chr16:1427311-1427602(-)$1	291	180	213	11.6237
eeee!!ccc[ccc[bblllbb]ccc]ccceeee	chr16:67596187-67596451(-)$1	264	181	214	10.0225
eeeee!!ccc[ccclllccc]ccc]eeeee]ee	chr14:70238226-70238465(+)$1	239	70	103	11.6398
""ccc[ffffff[allla]ffffff]ccc333a	chr16:85645775-85646038(+)$1	263	49	82	10.7980
ddd!!ccc[acccnnnnnccc]a]ccc22dddd	chr3:43733035-43733315(+)$1	280	60	93	10.3862
eeeeffffff[cccmmmmcccffffff]eeeee	chr6:37787834-37788101(+)$1	267	196	229	10.8866
ddd"""bb[bb[ccclllccc]bb]bb333ddd	chr19:34287649-34287898(+)$1	249	44	77	10.5097
fff[ccc[a!!cccmmmmcccaccc]ffffff6	chr4:1238203-1238467(-)$1	264	104	137	11.1219
[eeeee"""a[a[ammmma]a]a333eeeee]d	chr2:97559959-97560181(-)$1	222	17	50	11.9236
ccggggggg"""bbmmmmbb333ggggggg333	chr1:145442429-145442701(+)$1	272	22	55	12.1536
dd[iiiiiiiiia!!bb[a[a[===========	chr5:154136404-154136689(+)$1	285	79	112	9.0015
c[===========nnnnn===========]ccc	chr11:1999390-1999682(+)$1	292	185	218	13.3082
fff"""dddd[ccc[=================[	chr13:92003226-92003434(+)$1	208	86	119	10.5659
d!!ccc!!ffffffmmmmffffff22ccc22dd	chr16:15234722-15235030(-)$1	308	10	43	9.7672
b####eeeee[cccnnnnnccceeeee4444bb	chr13:95677259-95677557(-)$1	298	142	175	10.2537
eeeeeiiiiiiiiillliiiiiiiiieeeee[d	chr10:75785377-75785626(+)$1	249	176	209	11.9548
'iiiiiiiii!!ccclllccc]iiiiiiiii77	chr16:89020552-89020801(-)$1	249	173	206	12.1097
"""bbdddd"""ccclllcccdddd]bb333dd	chr16:85685034-85685378(+)$1	344	202	235	10.1898
eeeee"""ffffffmmmmffffffeeeee333b	chr19:3696047-3696361(-)$1	314	64	97	10.0406
bb!!ggggggg[bbnnnnnbb]ggggggg22bb	chr16:58959496-58959726(+)$1	230	59	92	10.7201
!!dddd[gggggggnnnnnggggggg]dddd]b	chr3:41241185-41241459(+)$1	274	46	79	9.8919
%%a[===========lll===========]a66	chr20:57467335-57467628(+)$1	293	181	214	12.2150
e[a[eeeee!!cccmmmmccc]eeeee]aeeee	chrX:70586280-70586561(+)$1	281	193	226	12.0771
ccdddd[a"""cccmmmmccca]dddd]ccc]e	chr8:30669835-30670091(-)$1	256	24	57	10.8888
ee[eeeee[bbcccmmmmccc]bbeeeee333e	chr20:60735914-60736205(+)$1	291	227	260	11.4749
eee!!ccc[bb!!bblllbb22bb]ccc22eee	chrX:104695765-104695969(+)$1	204	48	81	10.0410
ee[ggggggg[cccmmmmccc]ggggggg]eee	chr19:3062292-3062531(-)$1	239	45	78	13.8969
ccc!!ggggggg[ammmma]ggggggg4444cc	chr11:32915001-32915271(+)$1	270	159	192	12.9568
!a[ggggggg[a[bbmmmmbb]a]ggggggga]	chr7:150761436-150761696(+)$1	260	119	152	11.4215
[ccc!!ccc!!cccooooooccc22ccc22ccc	chr1:569793-570032(-)$1	239	158	191	11.5127
cccccggggggg!!ammmma22ggggggg]ccc	chr10:74035233-74035520(+)$1	287	239	272	11.5040
ffff[eeeee!!ccclllccceeeeeffffff]	chr19:1104619-1104865(+)$1	246	54	87	10.4340
fff"""gggggggammmma]gggggggffffff	chr2:3318641-3318908(-)$1	267	213	246	11.9763
===========[annnnna]===========ii	chr4:1241988-1242251(-)$1	263	1	34	12.9079
=========ddddbbmmmmbb]dddd333====	chr7:5569717-5569978(-)$1	261	176	209	10.1003
ff[ccc[ccc[cccmmmmccc]cccccc]ffff	chr8:101964436-101964710(-)$1	274	227	260	12.2265
a[==========[annnnna]==========]a	chr10:111986973-111987263(+)$1	290	48	81	13.2826
###ddddeeeeeccclllccc]eeeee]dddde	chr13:92001176-92001429(+)$1	253	59	92	10.0493
eeee!!dddd[cccooooooccc]dddd]eeee	chr2:183902916-183903198(-)$1	282	57	90	10.8442
cc!!ggggggg[bbmmmmbb22ggggggg22cc	chr19:2271149-2271432(+)$1	283	29	62	11.8861
ee[===========lll===========eeeee	chr19:4038352-4038641(+)$1	289	160	193	14.1131
###a[dddd[a!!ammmma22a]dddd]a22bb	chr19:877706-877961(-)$1	255	31	64	9.8641
ccc!!iiiiiiiiillliiiiiiiii22ccc::	chr8:103423800-103424031(-)$1	231	183	216	10.5456
fffffiiiiiiiiiooooooiiiiiiiii:fff	chr20:362087-362342(+)$1	255	43	76	10.9491
e[ccc[dddd[cccmmmmcccddddccc]eeee	chr16:89032666-89032921(-)$1	255	100	133	11.0938

#otherMatches

#Seq PSSM
gguuggugggggagugugguuguuggggggagu	chr17:4755980-4756271(+)$1	291	214	247	9.3964
AGCGGAGAGAGCCUGGGGGAAGGAUUUUUACUG	chr11:374224-374476(+)$1	252	50	83	9.4537
GUGUGUGUGUGUUGGGGAGGGGAGCGCACCGCG	chr15:69110936-69111189(-)$1	253	219	252	9.5545
GGGUUCCCCAGCCCCUGGGGCUGGGGAGAAGUU	chr2:61764233-61764522(-)$1	289	133	166	12.0565
UGAUUAUGUUUAUCUGAUGAAGAUGAUCACUUU	chr8:113382265-113382468(-)$1	203	51	84	9.1853
GCUCCAGGCCUGGGGACUGGGUUUGGGCCGCCC	chr12:109124510-109124804(-)$1	294	32	65	13.0528
GUAUGAAGCUUGUCCUCUGACUAGGUUUCUAAU	chr17:66042689-66042975(+)$1	286	177	210	12.0531
GUCCUGAGGGGCCUGGGGAGGACGGGCAGGACC	chr16:1427311-1427602(-)$1	291	180	213	11.6237
GGCGUCACGGGACGCGCCGCGAGUCGCGUCGUC	chr16:67596187-67596451(-)$1	264	181	214	10.0225
AAGGGGGGUUGGGUUGGGCUGGAUAUCUUUGUA	chr14:70238226-70238465(+)$1	239	70	103	11.6398
GACGCGCCCGCCGCGAUGGGGUGggggcggggc	chr16:85645775-85646038(+)$1	263	49	82	10.7980
CCGAAUUCGCCCGGGAAGCggcgggagggcggg	chr3:43733035-43733315(+)$1	280	60	93	10.3862
CUCGGGCCCACGGGGGCCUCCUGGGCCACGGGU	chr6:37787834-37788101(+)$1	267	196	229	10.8866
cgcgaggggccgcgugaagcgggggccggggcg	chr19:34287649-34287898(+)$1	249	44	77	10.5097
UUGGGACACUGUCCUGGUGGAGGUCGUGAGGGA	chr4:1238203-1238467(-)$1	264	104	137	11.1219
gugggugaguggguggggggugggaggccuggg	chr2:97559959-97560181(-)$1	222	17	50	11.9236
CCUUUUCUGAGAGUUAUUACAGCCAGAAAGUGU	chr1:145442429-145442701(+)$1	272	22	55	12.1536
AGGGGCCUGCGGCGACUUGAGGGGCGUGUGGCG	chr5:154136404-154136689(+)$1	285	79	112	9.0015
ACAACUCGGGCAGGCCUAUUGCCCGAGUUUUGG	chr11:1999390-1999682(+)$1	292	185	218	13.3082
GCUUCUGUAGCACUAAAGUGCUUAUAGUGCAGG	chr13:92003226-92003434(+)$1	208	86	119	10.5659
UGGCAGGGCUGGGCGGGUGCUCAGGGCUGGAGG	chr16:15234722-15235030(-)$1	308	10	43	9.7672
AAAUUGAGAGUGCAUGUUUUGCCUUUCUUCCUC	chr13:95677259-95677557(-)$1	298	142	175	10.2537
CACuuaucuuggguaauacccgagguucauugc	chr10:75785377-75785626(+)$1	249	176	209	11.9548
CCUGUUGUGGUCAGGGGACCUUUCAUAGCAGUU	chr16:89020552-89020801(-)$1	249	173	206	12.1097
GUUGGUAGUUUGACCCUGGGUGCUGUCCUCAGG	chr16:85685034-85685378(+)$1	344	202	235	10.1898
gugcagauccuggugaacaucaggugcaugaGG	chr19:3696047-3696361(-)$1	314	64	97	10.0406
ACUGACCUGGGUCUCAGAUGGUCUUAGGUAUGU	chr16:58959496-58959726(+)$1	230	59	92	10.7201
AGGCGCGCGGUCCGGGCGGCGGGCUGGGCGCAG	chr3:41241185-41241459(+)$1	274	46	79	9.8919
AGUGGGGGGGCUGGUGACAUCAGCCCCUCGGAA	chr20:57467335-57467628(+)$1	293	181	214	12.2150
GUCCUCAUGGGUGCGGGAGCAACGUGGCGUGGG	chrX:70586280-70586561(+)$1	281	193	226	12.0771
CCCUGUGGGACCUggcgacggcggcggagggag	chr8:30669835-30670091(-)$1	256	24	57	10.8888
GGUCACCUGCGCCCGAGGGGGACGGGGUGCGUU	chr20:60735914-60736205(+)$1	291	227	260	11.4749
UGGAAGAUACAAAGAAAUUUGGUGAAUUACCCA	chrX:104695765-104695969(+)$1	204	48	81	10.0410
GCGUCGCCGCCAUUAGACAAUAGCgguggggcc	chr19:3062292-3062531(-)$1	239	45	78	13.8969
GGUGAAGUUUGGGCUCGUGGCUGAACUCGGGAU	chr11:32915001-32915271(+)$1	270	159	192	12.9568
GGAUGGCAGGGGAGGGACACUGUGCCUGCCACA	chr7:150761436-150761696(+)$1	260	119	152	11.4215
GUGGAGUGGAAGUGAAAUCACAUGGCUAGGCCG	chr1:569793-570032(-)$1	239	158	191	11.5127
AGCUAUCUUACAGACGCAUGAAUGUAAGAGUAG	chr10:74035233-74035520(+)$1	287	239	272	11.5040
UUUGUCCCCGCUAGCGGCGCUCGGGGUGGGGGA	chr19:1104619-1104865(+)$1	246	54	87	10.4340
AGGGUGACCAGCACUCUUGUUGCUGGUCCUGAG	chr2:3318641-3318908(-)$1	267	213	246	11.9763
GCGCGCUCCCGGGCCACUCGCGGGAGCGCGCCU	chr4:1241988-1242251(-)$1	263	1	34	12.9079
CGUGCGCGCUGGUCCUUUGGGCGCUAACUGCGU	chr7:5569717-5569978(-)$1	261	176	209	10.1003
GGCGGCUGCGGGCGAGGACGCGCGCGCCUCCGC	chr8:101964436-101964710(-)$1	274	227	260	12.2265
gggcgugcgcgugugggaggggcgugcgcgugu	chr10:111986973-111987263(+)$1	290	48	81	13.2826
ccucggcgccgccggucgccgcgcggcugccgc	chr13:92001176-92001429(+)$1	253	59	92	10.0493
CUAGUGGAGCAGCCGGGGAAGGCGGCUCGUUgg	chr2:183902916-183903198(-)$1	282	57	90	10.8442
ACUGCUGCCCUUGUAGGUGCUUGGGGCAGGCGU	chr19:2271149-2271432(+)$1	283	29	62	11.8861
AUGUGUUGUAUUUUUUGAAAGUGCAAUAAUUUG	chr19:4038352-4038641(+)$1	289	160	193	14.1131
AGGUGAGCUGCUGGGGCACGUGGGGCUGGGGCU	chr19:877706-877961(-)$1	255	31	64	9.8641
GCCGAUUCCCGGCAGAUUGCUGGGAGCGGGCGG	chr8:103423800-103424031(-)$1	231	183	216	10.5456
GGGGUCUGUUUUGCGUGAGUGCGGGAUAGGGGA	chr20:362087-362342(+)$1	255	43	76	10.9491
CCGGGAGGUCUGUGGACUCGCGAUCCCCCGCUC	chr16:89032666-89032921(-)$1	255	100	133	11.0938

#DB
(.((..(.((.((......)).)).)...)).)	chr17:4755980-4756271(+)$1	1	214	247	9.3964
.(((((((((.(((......))).))))).)))	chr11:374224-374476(+)$1	1	50	83	9.4537
(((((.(((((((.........)))))))))))	chr15:69110936-69111189(-)$1	1	219	252	9.5545
))).((((((((((...))))))))))((((((	chr2:61764233-61764522(-)$1	1	133	166	12.0565
(((((((.(((((...))))).)))))))..))	chr8:113382265-113382468(-)$1	1	51	84	9.1853
((.((((((((((...))))))))))))).)))	chr12:109124510-109124804(-)$1	1	32	65	13.0528
))))((((((((((....))).))))))).(((	chr17:66042689-66042975(+)$1	1	177	210	12.0531
((((((...(.(((....))).)...)))))))	chr16:1427311-1427602(-)$1	1	180	213	11.6237
((((..(((.(((.((...)).))).)))))))	chr16:67596187-67596451(-)$1	1	181	214	10.0225
(((((..(((.(((...))).))).))))).))	chr14:70238226-70238465(+)$1	1	70	103	11.6398
..(((.((((((.(...).)))))).)))...)	chr16:85645775-85646038(+)$1	1	49	82	10.7980
(((..(((.((((.....))).).)))..))))	chr3:43733035-43733315(+)$1	1	60	93	10.3862
((((((((((.(((....))))))))).)))))	chr6:37787834-37788101(+)$1	1	196	229	10.8866
(((...((.((.(((...))).)).))...)))	chr19:34287649-34287898(+)$1	1	44	77	10.5097
(((.(((.(..(((....))))))).)))))).	chr4:1238203-1238467(-)$1	1	104	137	11.1219
.(((((...(.(.(....).).)...))))).)	chr2:97559959-97560181(-)$1	1	17	50	11.9236
(((((((((...((....))...)))))))...	chr1:145442429-145442701(+)$1	1	22	55	12.1536
((.((((((((((..((.(.(.(((((((((((	chr5:154136404-154136689(+)$1	1	79	112	9.0015
(.(((((((((((.....))))))))))).)))	chr11:1999390-1999682(+)$1	1	185	218	13.3082
(((...((((.(((.(((((((((((((((((.	chr13:92003226-92003434(+)$1	1	86	119	10.5659
(..(((..((((((....))))))..)))..))	chr16:15234722-15235030(-)$1	1	10	43	9.7672
(....(((((.(((.....))))))))....))	chr13:95677259-95677557(-)$1	1	142	175	10.2537
)))))(((((((((...)))))))))(((((.(	chr10:75785377-75785626(+)$1	1	176	209	11.9548
.(((((((((..(((...))).)))))))))..	chr16:89020552-89020801(-)$1	1	173	206	12.1097
...((((((...(((...))))))).))...))	chr16:85685034-85685378(+)$1	1	202	235	10.1898
(((((...((((((....)))))))))))...)	chr19:3696047-3696361(-)$1	1	64	97	10.0406
((..(((((((.((.....)).)))))))..))	chr16:58959496-58959726(+)$1	1	59	92	10.7201
..((((.(((((((.....))))))).)))).)	chr3:41241185-41241459(+)$1	1	46	79	9.8919
..(.(((((((((((...))))))))))).)..	chr20:57467335-57467628(+)$1	1	181	214	12.2150
(.(.(((((..(((....))).))))).)))))	chrX:70586280-70586561(+)$1	1	193	226	12.0771
((((((.(...(((....)))).)))).))).)	chr8:30669835-30670091(-)$1	1	24	57	10.8888
((.(((((.(((((....))).)))))))...)	chr20:60735914-60736205(+)$1	1	227	260	11.4749
(((..(((.((..((...))..)).)))..)))	chrX:104695765-104695969(+)$1	1	48	81	10.0410
((.(((((((.(((....))).))))))).)))	chr19:3062292-3062531(-)$1	1	45	78	13.8969
(((..(((((((.(....).)))))))....))	chr11:32915001-32915271(+)$1	1	159	192	12.9568
.(.(((((((.(.((....)).).)))))))).	chr7:150761436-150761696(+)$1	1	119	152	11.4215
.(((..(((..(((......)))..)))..)))	chr1:569793-570032(-)$1	1	158	191	11.5127
))((((((((((..(....)..))))))).)))	chr10:74035233-74035520(+)$1	1	239	272	11.5040
((((.(((((..(((...)))))))))))))).	chr19:1104619-1104865(+)$1	1	54	87	10.4340
(((...((((((((....).)))))))))))))	chr2:3318641-3318908(-)$1	1	213	246	11.9763
(((((((((((.(.....).)))))))))))((	chr4:1241988-1242251(-)$1	1	1	34	12.9079
(((((((((((((((....)).))))...))))	chr7:5569717-5569978(-)$1	1	176	209	10.1003
((.(((.(((.(((....))).)))))).))))	chr8:101964436-101964710(-)$1	1	227	260	12.2265
(.((((((((((.(.....).)))))))))).)	chr10:111986973-111987263(+)$1	1	48	81	13.2826
...((((((((((((...))).))))).)))))	chr13:92001176-92001429(+)$1	1	59	92	10.0493
((((..((((.(((......))).)))).))))	chr2:183902916-183903198(-)$1	1	57	90	10.8442
((..(((((((.((....))..)))))))..))	chr19:2271149-2271432(+)$1	1	29	62	11.8861
((.(((((((((((...))))))))))))))))	chr19:4038352-4038641(+)$1	1	160	193	14.1131
...(.((((.(..(....)..).)))).)..))	chr19:877706-877961(-)$1	1	31	64	9.8641
(((..(((((((((...)))))))))..)))..	chr8:103423800-103424031(-)$1	1	183	216	10.5456
)))))(((((((((......))))))))).(((	chr20:362087-362342(+)$1	1	43	76	10.9491
(.(((.((((.(((....)))))))))).))))	chr16:89032666-89032921(-)$1	1	100	133	11.0938

#PSSM
e : 0.26	c : 0.15	f : 0.13	d : 0.11	" : 0.03	[ : 0.03	b : 0.03	! : 0.03	= : 0.03	# : 0.03	: : 0.01	g : 0.01	' : 0.01	% : 0.01	a : 0.01	
e : 0.24	c : 0.15	f : 0.13	[ : 0.09	d : 0.09	# : 0.05	" : 0.03	! : 0.03	= : 0.03	g : 0.01	i : 0.01	b : 0.01	% : 0.01	a : 0.01	
e : 0.19	[ : 0.13	d : 0.11	f : 0.11	c : 0.11	= : 0.07	! : 0.05	# : 0.05	g : 0.03	a : 0.03	b : 0.01	i : 0.01	" : 0.01	
e : 0.19	= : 0.11	c : 0.11	! : 0.11	d : 0.07	g : 0.07	f : 0.05	" : 0.05	[ : 0.05	b : 0.03	i : 0.03	: : 0.01	# : 0.01	a : 0.01	
! : 0.15	= : 0.15	e : 0.13	g : 0.13	c : 0.11	d : 0.07	f : 0.05	" : 0.05	i : 0.03	[ : 0.03	# : 0.01	b : 0.01	
g : 0.17	= : 0.15	e : 0.11	! : 0.09	c : 0.09	i : 0.09	d : 0.09	" : 0.07	[ : 0.05	f : 0.03	
g : 0.21	= : 0.15	d : 0.11	e : 0.09	c : 0.09	i : 0.09	" : 0.05	[ : 0.05	! : 0.03	f : 0.03	a : 0.01	b : 0.01	
g : 0.21	= : 0.15	e : 0.11	c : 0.11	i : 0.09	d : 0.09	[ : 0.05	" : 0.05	f : 0.03	b : 0.01	! : 0.01	a : 0.01	
g : 0.21	= : 0.15	e : 0.11	i : 0.09	d : 0.09	c : 0.07	f : 0.07	[ : 0.07	" : 0.05	b : 0.01	a : 0.01	
g : 0.19	= : 0.13	e : 0.09	i : 0.09	b : 0.07	f : 0.07	d : 0.07	a : 0.05	! : 0.05	" : 0.05	[ : 0.03	c : 0.03	
[ : 0.24	g : 0.15	= : 0.13	! : 0.09	i : 0.07	f : 0.05	b : 0.05	" : 0.05	e : 0.03	c : 0.03	d : 0.01	a : 0.01	
c : 0.34	= : 0.11	g : 0.09	[ : 0.07	i : 0.07	! : 0.07	f : 0.05	e : 0.03	a : 0.03	" : 0.03	b : 0.01	d : 0.01	
c : 0.44	= : 0.09	[ : 0.09	b : 0.07	g : 0.05	i : 0.05	! : 0.05	a : 0.03	f : 0.03	e : 0.01	d : 0.01	
c : 0.40	a : 0.11	b : 0.11	= : 0.05	n : 0.05	i : 0.05	l : 0.03	! : 0.03	f : 0.03	o : 0.01	r : 0.01	[ : 0.01	g : 0.01	
m : 0.34	l : 0.15	n : 0.13	o : 0.09	c : 0.09	b : 0.07	r : 0.01	! : 0.01	[ : 0.01	= : 0.01	a : 0.01	
m : 0.40	l : 0.28	n : 0.13	o : 0.09	b : 0.03	r : 0.01	= : 0.01	
m : 0.40	l : 0.26	n : 0.13	o : 0.09	= : 0.03	r : 0.01	e : 0.01	b : 0.01	
m : 0.40	l : 0.15	n : 0.13	o : 0.09	= : 0.07	i : 0.03	r : 0.01	e : 0.01	c : 0.01	a : 0.01	[ : 0.01	
c : 0.32	= : 0.11	a : 0.11	o : 0.09	n : 0.07	b : 0.05	m : 0.05	f : 0.03	i : 0.03	r : 0.01	e : 0.01	l : 0.01	] : 0.01	
c : 0.34	b : 0.15	= : 0.11	o : 0.07	] : 0.07	f : 0.05	i : 0.03	a : 0.03	r : 0.01	e : 0.01	[ : 0.01	g : 0.01	2 : 0.01	
c : 0.38	= : 0.13	b : 0.09	2 : 0.07	f : 0.05	i : 0.05	g : 0.05	] : 0.03	a : 0.03	r : 0.01	e : 0.01	3 : 0.01	
] : 0.32	= : 0.15	c : 0.09	f : 0.07	a : 0.05	i : 0.05	g : 0.05	2 : 0.05	d : 0.03	r : 0.01	3 : 0.01	[ : 0.01	e : 0.01	
g : 0.19	= : 0.17	c : 0.13	b : 0.07	a : 0.07	f : 0.07	e : 0.07	i : 0.07	d : 0.05	] : 0.03	3 : 0.01	
g : 0.21	= : 0.17	d : 0.09	b : 0.07	] : 0.07	c : 0.07	f : 0.07	e : 0.07	i : 0.07	3 : 0.03	2 : 0.01	
g : 0.23	= : 0.17	e : 0.13	d : 0.11	] : 0.07	c : 0.07	i : 0.07	3 : 0.03	f : 0.03	2 : 0.03	
g : 0.23	= : 0.17	e : 0.15	c : 0.09	] : 0.07	i : 0.07	d : 0.07	3 : 0.03	a : 0.01	f : 0.01	b : 0.01	2 : 0.01	
g : 0.21	e : 0.17	c : 0.17	= : 0.15	f : 0.07	d : 0.05	3 : 0.03	b : 0.03	i : 0.03	] : 0.01	2 : 0.01	
g : 0.17	c : 0.15	= : 0.13	e : 0.11	f : 0.09	] : 0.09	3 : 0.05	2 : 0.03	4 : 0.03	i : 0.03	d : 0.03	b : 0.01	
g : 0.17	e : 0.15	c : 0.11	= : 0.11	f : 0.09	3 : 0.07	2 : 0.05	] : 0.05	4 : 0.03	i : 0.03	d : 0.03	a : 0.03	
e : 0.19	2 : 0.13	] : 0.11	f : 0.11	3 : 0.09	= : 0.09	d : 0.05	: : 0.03	g : 0.03	4 : 0.03	c : 0.03	b : 0.01	i : 0.01	
e : 0.21	f : 0.15	c : 0.11	d : 0.09	2 : 0.09	3 : 0.09	= : 0.09	4 : 0.03	b : 0.01	] : 0.01	i : 0.01	a : 0.01	g : 0.01	
e : 0.19	f : 0.15	d : 0.13	c : 0.11	] : 0.09	3 : 0.07	= : 0.05	b : 0.05	[ : 0.01	7 : 0.01	6 : 0.01	a : 0.01	i : 0.01	: : 0.01	
e : 0.24	d : 0.17	c : 0.11	f : 0.09	b : 0.09	a : 0.03	6 : 0.03	= : 0.03	] : 0.03	g : 0.01	3 : 0.01	[ : 0.01	7 : 0.01	i : 0.01	: : 0.01	

#score	581.8855320842733
#seq	52
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF121XLA_HNRNPA1_UTR_m1_run1.txt

#BEAR
:::eeeeegggggggnnnnnggggggg22eeee	chr2:198284105-198284401(-)$1	296	221	254	19.0542
::=============nnnnn=============	chr12:53435280-53435522(+)$1	242	8	41	21.7322
::ccc"""gggggggooooooggggggg333cc	chr3:30734709-30734974(+)$1	265	70	103	18.5541
:::iiiiiiiiicccnnnnnccc]iiiiiiiii	chr14:23793866-23794079(+)$1	213	52	85	20.3110

#otherMatches

#Seq PSSM
AUUGUGAUGCUAUACUACUUGUAUAGCUAGUUA	chr2:198284105-198284401(-)$1	296	221	254	19.0542
UGUUGUUUUUUUAAGCUUCCCUUGAGAGAAUAA	chr12:53435280-53435522(+)$1	242	8	41	21.7322
AUUUGAAUGUGGGACACAAAGGUCCCAUUUGCA	chr3:30734709-30734974(+)$1	265	70	103	18.5541
GUUGAUCCUCCCCAACAGCCUUGUGGGAGGAUU	chr14:23793866-23794079(+)$1	213	52	85	20.3110

#DB
...((((((((((((.....)))))))..))))	chr2:198284105-198284401(-)$1	1	221	254	19.0542
..(((((((((((((.....)))))))))))))	chr12:53435280-53435522(+)$1	1	8	41	21.7322
..(((...(((((((......)))))))...))	chr3:30734709-30734974(+)$1	1	70	103	18.5541
...((((((((((((.....))).)))))))))	chr14:23793866-23794079(+)$1	1	52	85	20.3110

#PSSM
: : 1.00	
: : 1.00	
: : 0.50	= : 0.25	c : 0.25	
e : 0.25	= : 0.25	c : 0.25	i : 0.25	
e : 0.25	= : 0.25	c : 0.25	i : 0.25	
e : 0.25	= : 0.25	" : 0.25	i : 0.25	
e : 0.25	= : 0.25	" : 0.25	i : 0.25	
e : 0.25	= : 0.25	" : 0.25	i : 0.25	
g : 0.50	= : 0.25	i : 0.25	
g : 0.50	= : 0.25	i : 0.25	
g : 0.50	= : 0.25	i : 0.25	
g : 0.50	= : 0.25	i : 0.25	
g : 0.50	= : 0.25	c : 0.25	
g : 0.50	= : 0.25	c : 0.25	
g : 0.50	= : 0.25	c : 0.25	
n : 0.75	o : 0.25	
n : 0.75	o : 0.25	
n : 0.75	o : 0.25	
n : 0.75	o : 0.25	
n : 0.75	o : 0.25	
g : 0.25	= : 0.25	o : 0.25	c : 0.25	
g : 0.50	= : 0.25	c : 0.25	
g : 0.50	= : 0.25	c : 0.25	
g : 0.50	= : 0.25	] : 0.25	
g : 0.50	= : 0.25	i : 0.25	
g : 0.50	= : 0.25	i : 0.25	
g : 0.50	= : 0.25	i : 0.25	
2 : 0.25	= : 0.25	g : 0.25	i : 0.25	
2 : 0.25	= : 0.25	3 : 0.25	i : 0.25	
e : 0.25	= : 0.25	3 : 0.25	i : 0.25	
e : 0.25	= : 0.25	3 : 0.25	i : 0.25	
e : 0.25	= : 0.25	c : 0.25	i : 0.25	
e : 0.25	= : 0.25	c : 0.25	i : 0.25	

#score	79.65165307887499
#seq	4
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_UTR_m2_run2.txt

#BEAR
eeeeeyyyyyyyyyyyyyyy	chr12:75896712-75897043(-)$1	331	104	124	20.4964
::cccuuuuuuuuuuuuccc	chr17:26937612-26937937(-)$1	325	201	221	20.2001
fffffuuuuuuuuuuuufff	chr2:54480859-54481223(-)$1	364	285	305	20.8952
dddyyyyyyyyyyyyyyyyd	chr11:62566465-62566792(-)$1	327	126	146	20.4952
#cccvvvvvvvvvvvvvccc	chr19:45912059-45912320(-)$1	261	216	236	20.9292
ccc[axxxxxxxxxxxxxxx	chr6:27223663-27223965(+)$1	302	263	283	17.2936
ddddvvvvvvvvvvvvvddd	chr7:149186707-149187063(-)$1	356	125	145	20.5645
ddddvvvvvvvvvvvvvddd	chr6:27223462-27223740(+)$1	278	37	57	20.5645
eeeeevvvvvvvvvvvvvee	chrX:122735093-122735448(-)$1	355	4	24	21.2094
==xxxxxxxxxxxxxxx===	chr15:44086579-44086870(+)$1	291	207	227	16.6637
[ayyyyyyyyyyyyyyyya]	chr11:57585408-57585689(+)$1	281	226	246	20.1502
[ddddwwwwwwwwwwwwwwd	chr15:49517299-49517556(+)$1	257	80	100	21.0316
dddbbtttttttttttbb]d	chr1:28300658-28300941(-)$1	283	37	57	19.1367
[dddduuuuuuuuuuuuddd	chr9:134373141-134373396(+)$1	255	208	228	21.9151
fffffwwwwwwwwwwwwwwf	chr2:85547407-85547700(-)$1	293	22	42	20.2335
eeeeewwwwwwwwwwwwwwe	chr5:41918338-41918669(+)$1	331	53	73	21.1181
fffffftttttttttttfff	chr19:41828744-41829112(+)$1	368	344	364	18.7589
eeeeettttttttttteeee	chr9:116169955-116170306(-)$1	351	227	247	20.0146
!ddddwwwwwwwwwwwwwwd	chr3:75779288-75779593(-)$1	305	185	205	21.0202
#cccvvvvvvvvvvvvvccc	chr19:45911819-45912145(-)$1	326	41	61	20.9292
dddyyyyyyyyyyyyyyyyd	chr2:85547937-85548199(-)$1	262	125	145	20.4952
eeeeettttttttttteeee	chr5:112227519-112227848(-)$1	329	308	328	20.0146
hhh[atttttttttttahhh	chr2:176791709-176791986(-)$1	277	22	42	19.4206
[ddddvvvvvvvvvvvvvdd	chr17:8063309-8063629(-)$1	320	157	177	21.0876
f[axxxxxxxxxxxxxxxaf	chr12:49330496-49330768(-)$1	272	231	251	17.3277
""ccctttttttttttccc]	chr12:133236531-133236833(-)$1	302	173	193	20.1230
eeeeeuuuuuuuuuuuueee	chr7:73108558-73108810(+)$1	252	102	122	22.0752
eeeeeuuuuuuuuuuuueee	chr2:176791557-176791894(-)$1	337	47	67	22.0752
##cccuuuuuuuuuuuuccc	chr11:62392520-62392798(-)$1	278	204	224	22.0284
eeeeeettttttttttteee	chr2:85547555-85547814(-)$1	259	71	91	20.0583
eeeeewwwwwwwwwwwwwwe	chr2:85547143-85547400(-)$1	257	169	189	21.1181
d!!ccctttttttttttccc	chr7:73110968-73111290(+)$1	322	280	300	20.1878
::cccuuuuuuuuuuuuccc	chr22:22050719-22050980(+)$1	261	2	22	20.2001
=====uuuuuuuuuuuu===	chr19:54960783-54961037(+)$1	254	12	32	21.6559
bb[bbuuuuuuuuuuuubb]	chr8:103876074-103876364(-)$1	290	105	125	20.5661
hhhhwwwwwwwwwwwwwwhh	chr3:184034315-184034616(+)$1	301	148	168	20.0656
a[ccctttttttttttccc]	chr19:48958124-48958415(+)$1	291	150	170	20.2434
hhhhhuuuuuuuuuuuuhhh	chr6:97591193-97591599(-)$1	406	33	53	20.4207
:dddduuuuuuuuuuuuddd	chr12:49330365-49330666(-)$1	301	40	60	20.8321
ceeeeettttttttttteee	chr1:46744258-46744542(-)$1	284	73	93	20.0410
!!ddddtttttttttttddd	chrX:62569263-62569569(-)$1	306	246	266	19.8234
hhhhhvvvvvvvvvvvvvhh	chr17:61666963-61667258(+)$1	295	34	54	19.8623
[eeeeettttttttttteee	chr20:35090668-35090947(+)$1	279	35	55	20.1958
:ddddtttttttttttdddd	chr11:6504389-6504832(+)$1	443	238	258	18.7034
hhhhwwwwwwwwwwwwwwhh	chr21:44269603-44269866(-)$1	263	90	110	20.0656
hhhhhhttttttttttthhh	chr5:112227427-112227712(-)$1	285	171	191	17.9177
eeeexxxxxxxxxxxxxxxe	chrX:77382442-77382767(+)$1	325	35	55	17.8631
ddddxxxxxxxxxxxxxxxd	chr12:49330289-49330565(-)$1	276	113	133	17.6554
dd[bbwwwwwwwwwwwwwwb	chr14:21490675-21491021(-)$1	346	213	233	20.0962
gggxxxxxxxxxxxxxxxgg	chr1:151030966-151031259(-)$1	293	248	268	17.3837
iiiwwwwwwwwwwwwwwiii	chr5:70954038-70954342(+)$1	304	122	142	20.1943
fffffyyyyyyyyyyyyyyy	chr6:32136671-32136960(-)$1	289	166	186	19.7594
fffffwwwwwwwwwwwwwwf	chr2:71215001-71215279(-)$1	278	32	52	20.2335
fffffwwwwwwwwwwwwwwf	chr1:113669263-113669550(+)$1	287	197	217	20.2335

#otherMatches

#Seq PSSM
GGGUUUUCUUCCACCUGCAU	chr12:75896712-75897043(-)$1	331	104	124	20.4964
AUGCUCUAUUUUCCUUCAGC	chr17:26937612-26937937(-)$1	325	201	221	20.2001
CCUCUUUAGCAAUUCCUAGA	chr2:54480859-54481223(-)$1	364	285	305	20.8952
uaguucuuucucuuuuucuu	chr11:62566465-62566792(-)$1	327	126	146	20.4952
UGCCUCUUUCUCUUUUUGGU	chr19:45912059-45912320(-)$1	261	216	236	20.9292
gugucucuauuucucuuccu	chr6:27223663-27223965(+)$1	302	263	283	17.2936
GGUCUGUCUUCUUACUUGGC	chr7:149186707-149187063(-)$1	356	125	145	20.5645
ACUGUACCCCUUUCCcucag	chr6:27223462-27223740(+)$1	278	37	57	20.5645
GGAACUCAUUAACUUCUUGU	chrX:122735093-122735448(-)$1	355	4	24	21.2094
GCUUCUUAUAUCCGUGUGCC	chr15:44086579-44086870(+)$1	291	207	227	16.6637
UCUCUCUUGUCCUCUUCUGC	chr11:57585408-57585689(+)$1	281	226	246	20.1502
uccugucuuuuucuuuaauu	chr15:49517299-49517556(+)$1	257	80	100	21.0316
AGAAcuuucucugucugucu	chr1:28300658-28300941(-)$1	283	37	57	19.1367
CGGGAGCCACACAUUCAUCU	chr9:134373141-134373396(+)$1	255	208	228	21.9151
UGUCCCUCCCAACUGUCUAG	chr2:85547407-85547700(-)$1	293	22	42	20.2335
ACUGAUAACUGCCCUCUUUU	chr5:41918338-41918669(+)$1	331	53	73	21.1181
CAGCGCAGCUGCCUCCCGUG	chr19:41828744-41829112(+)$1	368	344	364	18.7589
UAAGCUUUGAUAACCUGCUU	chr9:116169955-116170306(-)$1	351	227	247	20.0146
UUUCCCAUUCUCUUUCUCAG	chr3:75779288-75779593(-)$1	305	185	205	21.0202
UGCCUCUUUCUCUUUUUGGU	chr19:45911819-45912145(-)$1	326	41	61	20.9292
ACUUUUACUAACUCACUUCG	chr2:85547937-85548199(-)$1	262	125	145	20.4952
UAGCUUCUCUUCUUCUAGUU	chr5:112227519-112227848(-)$1	329	308	328	20.0146
aaaacucucaguucuuguuu	chr2:176791709-176791986(-)$1	277	22	42	19.4206
UUGUAUCACAUUUUCAUUUG	chr17:8063309-8063629(-)$1	320	157	177	21.0876
GACUUUGCCUCUUCUCCUGC	chr12:49330496-49330768(-)$1	272	231	251	17.3277
GAGCAACAUCCUUUUCUGCA	chr12:133236531-133236833(-)$1	302	173	193	20.1230
gaugcugcccuccaccugca	chr7:73108558-73108810(+)$1	252	102	122	22.0752
cuugcucucaacguccugua	chr2:176791557-176791894(-)$1	337	47	67	22.0752
GCGCAUUAAACUUCUUUUGC	chr11:62392520-62392798(-)$1	278	204	224	22.0284
UGCUGGUAUCGAAUAGUUCA	chr2:85547555-85547814(-)$1	259	71	91	20.0583
GGCUGUGCCCUCGACUUUCC	chr2:85547143-85547400(-)$1	257	169	189	21.1181
CUCACCUCUUGCCCCCUGGU	chr7:73110968-73111290(+)$1	322	280	300	20.1878
AAGACUCUGCUCCUCCUGUC	chr22:22050719-22050980(+)$1	261	2	22	20.2001
GCGUCUUUCUGGGGCGUGGU	chr19:54960783-54961037(+)$1	254	12	32	21.6559
CGCGCCUUUCUUCUUUUGCC	chr8:103876074-103876364(-)$1	290	105	125	20.5661
GGUAAUUCUCUUCUUUCCUA	chr3:184034315-184034616(+)$1	301	148	168	20.0656
gucccccccucucucugggu	chr19:48958124-48958415(+)$1	291	150	170	20.2434
GGCAUUUUAGGUUCUUCAUG	chr6:97591193-97591599(-)$1	406	33	53	20.4207
UCAACUCAUUCACUGCUGUU	chr12:49330365-49330666(-)$1	301	40	60	20.8321
CAGAACCCCAACCACCAGUU	chr1:46744258-46744542(-)$1	284	73	93	20.0410
AUUCAACCAUUUCGUUAUUG	chrX:62569263-62569569(-)$1	306	246	266	19.8234
CAAAUUUUAACUUUGUAUAU	chr17:61666963-61667258(+)$1	295	34	54	19.8623
UCCGAGCACCCCCACUUCUC	chr20:35090668-35090947(+)$1	279	35	55	20.1958
CUGGAUAGCAUAUCAUUCCA	chr11:6504389-6504832(+)$1	443	238	258	18.7034
UGGAUGUUUUCAUGUUGUUC	chr21:44269603-44269866(-)$1	263	90	110	20.0656
AUAGCUUCUCUUCUUCUAGU	chr5:112227427-112227712(-)$1	285	171	191	17.9177
gugcuccuuuauccaauuug	chrX:77382442-77382767(+)$1	325	35	55	17.8631
CCCCUCACCUUGUUUUUUUG	chr12:49330289-49330565(-)$1	276	113	133	17.6554
CAUGUUUUCCUCAAUUCUUG	chr14:21490675-21491021(-)$1	346	213	233	20.0962
CCCUUCCCUAUUCACUGUGG	chr1:151030966-151031259(-)$1	293	248	268	17.3837
agcacuugcuucucucaguu	chr5:70954038-70954342(+)$1	304	122	142	20.1943
GUUGCCUCCCCCUCAUCUCC	chr6:32136671-32136960(-)$1	289	166	186	19.7594
CUGUUUGCCUUAAUACCCUG	chr2:71215001-71215279(-)$1	278	32	52	20.2335
GCCUGUAAUCUUCAUCACUC	chr1:113669263-113669550(+)$1	287	197	217	20.2335

#DB
(((((...............	chr12:75896712-75897043(-)$1	1	104	124	20.4964
..(((............)))	chr17:26937612-26937937(-)$1	1	201	221	20.2001
(((((............)))	chr2:54480859-54481223(-)$1	1	285	305	20.8952
(((................)	chr11:62566465-62566792(-)$1	1	126	146	20.4952
.(((.............)))	chr19:45912059-45912320(-)$1	1	216	236	20.9292
(((.(...............	chr6:27223663-27223965(+)$1	1	263	283	17.2936
((((.............)))	chr7:149186707-149187063(-)$1	1	125	145	20.5645
((((.............)))	chr6:27223462-27223740(+)$1	1	37	57	20.5645
(((((.............))	chrX:122735093-122735448(-)$1	1	4	24	21.2094
((...............)))	chr15:44086579-44086870(+)$1	1	207	227	16.6637
.(................).	chr11:57585408-57585689(+)$1	1	226	246	20.1502
.((((..............)	chr15:49517299-49517556(+)$1	1	80	100	21.0316
(((((...........)).)	chr1:28300658-28300941(-)$1	1	37	57	19.1367
.((((............)))	chr9:134373141-134373396(+)$1	1	208	228	21.9151
(((((..............)	chr2:85547407-85547700(-)$1	1	22	42	20.2335
(((((..............)	chr5:41918338-41918669(+)$1	1	53	73	21.1181
((((((...........)))	chr19:41828744-41829112(+)$1	1	344	364	18.7589
(((((...........))))	chr9:116169955-116170306(-)$1	1	227	247	20.0146
.((((..............)	chr3:75779288-75779593(-)$1	1	185	205	21.0202
.(((.............)))	chr19:45911819-45912145(-)$1	1	41	61	20.9292
(((................)	chr2:85547937-85548199(-)$1	1	125	145	20.4952
(((((...........))))	chr5:112227519-112227848(-)$1	1	308	328	20.0146
(((.(...........))))	chr2:176791709-176791986(-)$1	1	22	42	19.4206
.((((.............))	chr17:8063309-8063629(-)$1	1	157	177	21.0876
(.(...............))	chr12:49330496-49330768(-)$1	1	231	251	17.3277
..(((...........))).	chr12:133236531-133236833(-)$1	1	173	193	20.1230
(((((............)))	chr7:73108558-73108810(+)$1	1	102	122	22.0752
(((((............)))	chr2:176791557-176791894(-)$1	1	47	67	22.0752
..(((............)))	chr11:62392520-62392798(-)$1	1	204	224	22.0284
)(((((...........)))	chr2:85547555-85547814(-)$1	1	71	91	20.0583
(((((..............)	chr2:85547143-85547400(-)$1	1	169	189	21.1181
(..(((...........)))	chr7:73110968-73111290(+)$1	1	280	300	20.1878
..(((............)))	chr22:22050719-22050980(+)$1	1	2	22	20.2001
(((((............)))	chr19:54960783-54961037(+)$1	1	12	32	21.6559
((.((............)).	chr8:103876074-103876364(-)$1	1	105	125	20.5661
((((..............))	chr3:184034315-184034616(+)$1	1	148	168	20.0656
(.(((...........))).	chr19:48958124-48958415(+)$1	1	150	170	20.2434
(((((............)))	chr6:97591193-97591599(-)$1	1	33	53	20.4207
.((((............)))	chr12:49330365-49330666(-)$1	1	40	60	20.8321
)(((((...........)))	chr1:46744258-46744542(-)$1	1	73	93	20.0410
..((((...........)))	chrX:62569263-62569569(-)$1	1	246	266	19.8234
(((((.............))	chr17:61666963-61667258(+)$1	1	34	54	19.8623
.(((((...........)))	chr20:35090668-35090947(+)$1	1	35	55	20.1958
.((((...........))))	chr11:6504389-6504832(+)$1	1	238	258	18.7034
((((..............))	chr21:44269603-44269866(-)$1	1	90	110	20.0656
((((((...........)))	chr5:112227427-112227712(-)$1	1	171	191	17.9177
((((...............)	chrX:77382442-77382767(+)$1	1	35	55	17.8631
((((...............)	chr12:49330289-49330565(-)$1	1	113	133	17.6554
((.((..............)	chr14:21490675-21491021(-)$1	1	213	233	20.0962
(((...............))	chr1:151030966-151031259(-)$1	1	248	268	17.3837
(((..............)))	chr5:70954038-70954342(+)$1	1	122	142	20.1943
(((((...............	chr6:32136671-32136960(-)$1	1	166	186	19.7594
(((((..............)	chr2:71215001-71215279(-)$1	1	32	52	20.2335
(((((..............)	chr1:113669263-113669550(+)$1	1	197	217	20.2335

#PSSM
e : 0.18	d : 0.14	f : 0.12	h : 0.11	[ : 0.09	: : 0.07	# : 0.05	c : 0.03	= : 0.03	! : 0.03	" : 0.01	b : 0.01	a : 0.01	g : 0.01	i : 0.01	
d : 0.24	e : 0.22	f : 0.11	h : 0.11	c : 0.05	: : 0.03	= : 0.03	[ : 0.03	! : 0.03	a : 0.01	" : 0.01	# : 0.01	b : 0.01	g : 0.01	i : 0.01	
d : 0.24	e : 0.22	c : 0.14	f : 0.11	h : 0.11	[ : 0.03	x : 0.01	y : 0.01	a : 0.01	! : 0.01	= : 0.01	g : 0.01	i : 0.01	
e : 0.22	d : 0.18	c : 0.14	f : 0.11	h : 0.09	y : 0.05	x : 0.05	b : 0.05	[ : 0.03	= : 0.01	w : 0.01	
e : 0.20	d : 0.12	c : 0.11	f : 0.11	x : 0.09	v : 0.07	y : 0.05	b : 0.05	w : 0.05	h : 0.05	a : 0.03	= : 0.01	
u : 0.20	w : 0.20	v : 0.12	t : 0.12	x : 0.11	y : 0.09	e : 0.05	f : 0.01	c : 0.01	d : 0.01	h : 0.01	
t : 0.25	u : 0.20	w : 0.20	v : 0.12	x : 0.11	y : 0.09	
t : 0.25	u : 0.20	w : 0.20	v : 0.12	x : 0.11	y : 0.09	
t : 0.25	u : 0.20	w : 0.20	v : 0.12	x : 0.11	y : 0.09	
t : 0.25	u : 0.20	w : 0.20	v : 0.12	x : 0.11	y : 0.09	
t : 0.25	u : 0.20	w : 0.20	v : 0.12	x : 0.11	y : 0.09	
t : 0.25	u : 0.20	w : 0.20	v : 0.12	x : 0.11	y : 0.09	
t : 0.25	u : 0.20	w : 0.20	v : 0.12	x : 0.11	y : 0.09	
t : 0.25	u : 0.20	w : 0.20	v : 0.12	x : 0.11	y : 0.09	
t : 0.25	u : 0.20	w : 0.20	v : 0.12	x : 0.11	y : 0.09	
t : 0.25	u : 0.20	w : 0.20	v : 0.12	x : 0.11	y : 0.09	
u : 0.20	w : 0.20	v : 0.12	t : 0.12	x : 0.11	y : 0.09	e : 0.03	c : 0.03	b : 0.01	a : 0.01	d : 0.01	
w : 0.18	c : 0.14	e : 0.12	d : 0.11	y : 0.09	x : 0.09	v : 0.05	h : 0.05	f : 0.03	= : 0.03	b : 0.03	i : 0.01	
c : 0.14	e : 0.14	w : 0.14	d : 0.12	h : 0.11	y : 0.07	x : 0.05	f : 0.03	= : 0.03	a : 0.03	] : 0.01	b : 0.01	g : 0.01	i : 0.01	
d : 0.24	e : 0.20	c : 0.11	f : 0.11	h : 0.11	] : 0.07	y : 0.03	= : 0.03	x : 0.01	b : 0.01	g : 0.01	i : 0.01	

#score	1083.6467681354961
#seq	54
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_transcript_m2_run2.txt

#BEAR
!!ddddffffffddddbbmmmmbb]dddd]ffffff22d	chr20:11871384-11871681(+)$1	297	109	148	12.7578
eeeee"""a[ccc!!ddddmmmmdddd]ccc]a22eeee	chr17:75369418-75369722(+)$1	304	152	191	12.5745
ggggbb!!adddd!!cccmmmmccc22dddd]a22bb]g	chr17:74349747-74350079(-)$1	332	16	55	13.7048
iiiiiiccc"""dddd[bblllbb22dddd]ccc]iiii	chr11:64880018-64880248(+)$1	230	100	139	12.6210
e[ggggggg[ccc[a[bbmmmmbb22a]cccggggggg]	chr17:1648526-1648769(+)$1	243	21	60	18.3104
===$$$$$ffffff!!bbmmmmbb]ffffff4444====	chr2:32288687-32288994(+)$1	307	152	191	14.9563
[ggggggg!!eeeee!!bblllbb22eeeee22gggggg	chr22:22221641-22221906(-)$1	265	194	233	13.4288
ddd"""iiiiiiiii[bbmmmmbb22iiiiiiiii4444	chr6:47277318-47277580(-)$1	262	42	81	17.4580
:ggggggg[ddddbb[bbmmmmbb]bb22dddd]ggggg	chr2:179315720-179315965(-)$1	245	10	49	14.1357
iiiccciiiiiiiii[bbmmmmbb22iiiiiiiii::FF	chr6:47277467-47277738(-)$1	271	200	239	14.9807
eeee[ccc"""gggggggmmmmggggggg333ccc333e	chr19:57351901-57352117(-)$1	216	78	117	14.6047
c[ccc"""a[dddd!!bbmmmmbb22dddd]accc]ccc	chr16:431740-432009(-)$1	269	25	64	16.6551
gggg!!ggggggg"""bbmmmmbbggggggg]ggggggg	chr6:110500563-110500943(-)$1	380	185	224	17.8086
eeeccc[ggggggg[cccmmmmccc]ggggggg]cccDD	chr19:3062396-3062625(-)$1	229	135	174	13.2627
dddd[a[hhhhhhhh[bbmmmmbb]hhhhhhhh]a]ddd	chr9:108456734-108457046(+)$1	312	163	202	14.4501
hhhhhhhccc[bbbb[bbmmmmbb]bb]bb]ccc]hhhh	chr2:21266669-21266872(-)$1	203	89	128	13.4862
iiiiiiiiidddd"""bbmmmmbbdddd4444iiiiiii	chr8:11725460-11725703(-)$1	243	83	122	16.5809
gggg[ccc[ccc####bbmmmmbb22cccccc22ggggg	chr6:170862208-170862469(-)$1	261	106	145	18.0787
333cccggggggg[cccammmma]ccc]ggggggg:hhh	chr2:152266611-152266878(+)$1	267	91	130	13.0826
d[dddd[eeeee####ccclllccc4444eeeee]dddd	chr11:116701188-116701412(+)$1	224	154	193	11.8280
eeee####ccc!!eeeeemmmmeeeee]ccc333eeeee	chr19:10764124-10764402(-)$1	278	195	234	13.6836
fggggggg!!bb####bbmmmmbb4444bb22ggggggg	chr17:38278461-38278741(+)$1	280	131	170	16.6259
eeeedddd!!ccc!!cccmmmmccc22ccc]dddd]eee	chr3:37284665-37284929(+)$1	264	134	173	14.3408
dd:eeeee[ccc[cccbbmmmmbb]ccc]ccc]eeeee:	chr17:17494764-17495104(-)$1	340	54	93	13.8068
CCdddd[iiiiiiiiibbmmmmbb22iiiiiiiiidddd	chr19:1605262-1605481(-)$1	219	76	115	14.5206
ddd####eeeee[bb[bbmmmmbb]bb22eeeeeddddd	chr6:33385301-33385552(-)$1	251	177	216	14.5039
f"""ccc!!ccc"""cccmmmmccc]ccc333ccc]fff	chr17:42398485-42398699(-)$1	214	42	81	15.3168
eeee[eeeee[a"""cccmmmmccc333a]eeeeeeeee	chr10:105727087-105727400(+)$1	313	45	84	14.8953
:dddd!!bb"""ccc[bbmmmmbbccc333bb22dddd:	chr20:35812516-35812758(+)$1	242	173	212	13.1452
dddd$$$$$gggggggbbmmmmbb]ggggggg333dddd	chr14:102430855-102431112(+)$1	257	18	57	15.7969
ggggggg[cccdddd[bblllbbdddd]ccc]ggggggg	chr4:157892292-157892602(-)$1	310	102	141	12.9727
cc[ccc"""dddd!!cccmmmmccc22dddd333ccc]c	chr4:152246569-152246822(-)$1	253	99	138	15.2548
c]ccc:ccc!!gggggggmmmmgggggggccceeeeedd	chr1:87380429-87380710(+)$1	281	89	128	12.5727
[eeeee[a[ccc"""cccmmmmccc333ccc]aeeeee]	chr10:102107739-102107996(+)$1	257	108	147	16.1050
]bbeeeeeeeeee"""bbmmmmbb4444eeeee22eeee	chr3:149093383-149093635(-)$1	252	80	119	14.9339
dda[bb[eeeee[bb[bbmmmmbb]bb]eeeee]bb22a	chr19:41859491-41859754(-)$1	263	136	175	14.0954
fffff[ccceeeee!!bbmmmmbb22eeeee22ccc]ff	chr8:98656817-98657070(+)$1	253	96	135	15.0873
ddddccc"""ccc[a!!ammmma22a]ccc22ccc333d	chr8:30669833-30670095(-)$1	262	46	85	15.2330
[eeeee[ggggggg[cccmmmmccc]ggggggg]eeeee	chr19:3062276-3062529(-)$1	253	39	78	15.1080
!ccc"""ggggggg!!bbmmmmbbggggggg333ccc33	chr16:70719787-70720053(-)$1	266	64	103	17.8036
dd[ffffff"""ccc!!ammmma22ccc4444ffffffd	chr3:51708290-51708566(+)$1	276	90	129	13.0224
==!!hhhhhhhh[a[cccmmmmccc]ahhhhhhhh]===	chr2:36583393-36583659(+)$1	266	58	97	13.2439
ddd"""ffffff!!ddddmmmmdddd333ffffffdddd	chr5:138629366-138629608(+)$1	242	140	179	12.0442
ee!!eeeee[ccc[ddddmmmmdddd]ccceeeee22ee	chrX:47003881-47004170(-)$1	289	73	112	12.3646
==========[a[bb[bbmmmmbb]bb]a==========	chr10:72575621-72575861(+)$1	240	9	48	17.3110
c[ccc!!eeeee[eeeeemmmmeeeee]eeeee22ccc]	chr15:41853224-41853545(+)$1	321	268	307	12.1755
ii[a[bb$$$$$ccc[bbmmmmbb]ccc333bba]iiii	chr1:52520588-52520871(-)$1	283	88	127	15.0398
[ccc[bbcccccc[a[bbmmmmbb22a]ccc333ccc]b	chr7:45928030-45928272(+)$1	242	191	230	17.7665
hhhhhhhh!!cccccc[ammmma]ccc]ccc4444hhhh	chr16:58059995-58060279(+)$1	284	129	168	13.6617
!hhhhhhhh[ccc!!cccmmmmccc4444ccc]hhhhhh	chr2:219157087-219157350(-)$1	263	151	190	14.1068
eeeee==========[bbmmmmbb]==========22ee	chr7:91763590-91763876(-)$1	286	125	164	17.5198

#otherMatches

#Seq PSSM
GAGCCCGCCGGGCGCUGGAUCUCCGAGUGCCCCGGCCGG	chr20:11871384-11871681(+)$1	297	109	148	12.7578
CCAGCCAUCAUGUCGGACCCCGCGGUCAACGCGCAGCUG	chr17:75369418-75369722(+)$1	304	152	191	12.5745
CCGAGAUGGCGGCCUGAGGGCGCUCUAGCCGACGCUCUU	chr17:74349747-74350079(-)$1	332	16	55	13.7048
CGCUGCUGCUGUGGCUCGCCUGGCUCGGCCUGCAGGCGG	chr11:64880018-64880248(+)$1	230	100	139	12.6210
GGGGGUCUCACUGGUGGCUUGGGCAGGGUGGGGGGCCUG	chr17:1648526-1648769(+)$1	243	21	60	18.3104
GCUUGGUUCCCGUCGGUCUGCGGGAGGCGGGUUAUGGCG	chr2:32288687-32288994(+)$1	307	152	191	14.9563
gcggGCGCGGGCCCGGAGAUGGUCCGCGGGCAGGUGUUC	chr22:22221641-22221906(-)$1	265	194	233	13.4288
UCCCUGGUUCUCCUCAGCCGCUGUCGGAGGAGAGCACCC	chr6:47277318-47277580(-)$1	262	42	81	17.4580
AGGGGGCGUAGCCGGAGCUACGGCACCAAGGCUCCGCCC	chr2:179315720-179315965(-)$1	245	10	49	14.1357
UCCCUGGUUCUCCUCAGCCGCUGUCGGAGGAGAGCACCC	chr6:47277467-47277738(-)$1	271	200	239	14.9807
CCCUGGGCUGGUggcgccgccgggcgccgggcgccAUGA	chr19:57351901-57352117(-)$1	216	78	117	14.6047
GGCGGAAGUGCCCGGGGCGACGGCGGCGGGGACCGGCCG	chr16:431740-432009(-)$1	269	25	64	16.6551
CGCCCCAGAGCCCGACCCUCCUGGGGGCUCUAGGCGGAG	chr6:110500563-110500943(-)$1	380	185	224	17.8086
GCCGGCGUCGCCGCCAUUAGACAAUAGCgguggggccgg	chr19:3062396-3062625(-)$1	229	135	174	13.2627
ACCAGUAGCCGCGGCUGCUUCGGUUGCCGCGGUCGGUGG	chr9:108456734-108457046(+)$1	312	163	202	14.4501
uggcgcugccugcgcugcugcugcugcugcugGCGGGCG	chr2:21266669-21266872(-)$1	203	89	128	13.4862
GCCGGGGCUGGCCCAGGCUACGGCGGCUGCAGGGCUCCG	chr8:11725460-11725703(-)$1	243	83	122	16.5809
AGCAAGUGUCGGAUCCGCAGGCGCAGCCGUGCGAUGUUG	chr6:170862208-170862469(-)$1	261	106	145	18.0787
GGGAGCGGGCCCAGGCCCGAAUGUGGCGUGGGCUCAGGU	chr2:152266611-152266878(+)$1	267	91	130	13.0826
GGCCUCUGCCCGUAAGCACUUGGUGGGACUGGGCUGGGG	chr11:116701188-116701412(+)$1	224	154	193	11.8280
ccuuccccuucccccauugacagauggagaaacugaggc	chr19:10764124-10764402(-)$1	278	195	234	13.6836
UGCCUCUGAGGCGAAggcggcggcggcggcagcagaggc	chr17:38278461-38278741(+)$1	280	131	170	16.6259
CGGGGCUGGAUGGGGGGCCGAGGCCAGCCAGUGGCACCC	chr3:37284665-37284929(+)$1	264	134	173	14.3408
UCACCGGGAAAGCGCCCCGACUGGCGGCACUUACCCGGC	chr17:17494764-17495104(-)$1	340	54	93	13.8068
GUGACCCGGUUCCUGGGCCCACGCUACCGGGAGCUGGUC	chr19:1605262-1605481(-)$1	219	76	115	14.5206
GAAGCCCUCCGACCCAGCCCUCGCCGGCCUCGGAUUCCG	chr6:33385301-33385552(-)$1	251	177	216	14.5039
UGCCAUGUAAGACCUGUGAUCUCACUUCUCCCCAUUGUC	chr17:42398485-42398699(-)$1	214	42	81	15.3168
ACUCGCCGUGACACGGGCCUAAGCCGCCGCCGCGGGAGU	chr10:105727087-105727400(+)$1	313	45	84	14.8953
CUGGAUCGCCCUUUCACAAAUUUGGAAUCUGCCUUCUAC	chr20:35812516-35812758(+)$1	242	173	212	13.1452
GCUGCCUUUAGGGCGGAGCCGGCUCCCGCUCUCCUCAGU	chr14:102430855-102431112(+)$1	257	18	57	15.7969
UGCUCGCCGCCGACUUGGCUUCCAGUCUGGCUGCGGGCA	chr4:157892292-157892602(-)$1	310	102	141	12.9727
GCGGGGAAUCGGCUCGGCCCGCGCCCUGCCGCUGCCCGG	chr4:152246569-152246822(-)$1	253	99	138	15.2548
CGGACACCAGCGGCGUUGGUGAUAGCGCCUGGGGGAGGG	chr1:87380429-87380710(+)$1	281	89	128	12.5727
ACCAUUACAGCGCCUCCCUCCAGGGUCCUGCAGAAUGGA	chr10:102107739-102107996(+)$1	257	108	147	16.1050
UGCUCCUGCCAGCAUUUGUCUUCAUUGGGCUGGAACAGG	chr3:149093383-149093635(-)$1	252	80	119	14.9339
GCCGCCGCCCCCGCCACUGCGGggaggagggggaggagg	chr19:41859491-41859754(-)$1	263	136	175	14.0954
GCUGCUGCUGCUGUUUCUGCUGGGCUACGGCUGGGCCGC	chr8:98656817-98657070(+)$1	253	96	135	15.0873
cggcggcggagggagaggggagcggcgcccgggccgggg	chr8:30669833-30670095(-)$1	262	46	85	15.2330
GCCGGCGUCGCCGCCAUUAGACAAUAGCgguggggccgg	chr19:3062276-3062529(-)$1	253	39	78	15.1080
CGAUCCUCGGCGGCUCGGAUUACCGCCGCCGUCAGUCCc	chr16:70719787-70720053(-)$1	266	64	103	17.8036
CUGCUGGCCUUUGCCGGGUACUCAGGGCUACUGGCUGGG	chr3:51708290-51708566(+)$1	276	90	129	13.0224
GGGACAGGGGGUUGGCCGGCUGCGGGCACCUCCUGGUCU	chr2:36583393-36583659(+)$1	266	58	97	13.2439
CGGGUAAGAGUCGGGGUCGGGUGGCUGGGGGUUCUCCGU	chr5:138629366-138629608(+)$1	242	140	179	12.0442
CCCUGCAGCACCAUCUGUCAUGGCGGCUGGGCUGUUUGG	chrX:47003881-47004170(-)$1	289	73	112	12.3646
GGCGUGCGCGCGGCUGGUAGCAGCGGGGCCGCGCACGCC	chr10:72575621-72575861(+)$1	240	9	48	17.3110
GGAUCGGCUUCCUCAGGUGCAGGCCUGUGGGGGAAGGUG	chr15:41853224-41853545(+)$1	321	268	307	12.1755
CGCGCACCUACUGCCAUGGAGACGCGGCCUCGUCUCGGG	chr1:52520588-52520871(-)$1	283	88	127	15.0398
UCGGCCCCUGUCUGCUGCUCGCGCCUGGAGAUGUCAGAG	chr7:45928030-45928272(+)$1	242	191	230	17.7665
CCGGCGGGGACCGGGAGCCCGAGGUCCGCGGCGCGCCUG	chr16:58059995-58060279(+)$1	284	129	168	13.6617
GAACGGCGCAGGCAAGCCAGGGGGCCGGGGCCGGCGCCG	chr2:219157087-219157350(-)$1	263	151	190	14.1068
UGCCAGCUUCUCUCGUUCCGUCGAUUGGGAGGAGCGGUG	chr7:91763590-91763876(-)$1	286	125	164	17.5198

#DB
..((((((((((((((((....)).)))).))))))..)	chr20:11871384-11871681(+)$1	1	109	148	12.7578
(((((...(.(((..((((....)))).))).)..))))	chr17:75369418-75369722(+)$1	1	152	191	12.5745
((((((..(((((..(((....)))..)))).)..)).)	chr17:74349747-74350079(-)$1	1	16	55	13.7048
(((((((((...((((.((...))..)))).))).))))	chr11:64880018-64880248(+)$1	1	100	139	12.6210
(.(((((((.(((.(.((....))..).)))))))))).	chr17:1648526-1648769(+)$1	1	21	60	18.3104
(((.....((((((..((....)).))))))....))))	chr2:32288687-32288994(+)$1	1	152	191	14.9563
.(((((((..(((((..((...))..)))))..))))))	chr22:22221641-22221906(-)$1	1	194	233	13.4288
(((...(((((((((.((....))..)))))))))....	chr6:47277318-47277580(-)$1	1	42	81	17.4580
.(((((((.((((((.((....)).))..)))).)))))	chr2:179315720-179315965(-)$1	1	10	49	14.1357
))))))(((((((((.((....))..)))))))))..))	chr6:47277467-47277738(-)$1	1	200	239	14.9807
((((.(((...(((((((....)))))))...)))...)	chr19:57351901-57352117(-)$1	1	78	117	14.6047
(.(((...(.((((..((....))..)))).)))).)))	chr16:431740-432009(-)$1	1	25	64	16.6551
((((..(((((((...((....))))))))).)))))))	chr6:110500563-110500943(-)$1	1	185	224	17.8086
)))(((.(((((((.(((....))).))))))).)))))	chr19:3062396-3062625(-)$1	1	135	174	13.2627
((((.(.((((((((.((....)).)))))))).).)))	chr9:108456734-108457046(+)$1	1	163	202	14.4501
((((((((((.((((.((....)).)).)).))).))))	chr2:21266669-21266872(-)$1	1	89	128	13.4862
(((((((((((((...((....))))))....)))))))	chr8:11725460-11725703(-)$1	1	83	122	16.5809
((((.(((.(((....((....))..))))))..)))))	chr6:170862208-170862469(-)$1	1	106	145	18.0787
...)))(((((((.((((....).))).))))))).(((	chr2:152266611-152266878(+)$1	1	91	130	13.0826
(.((((.(((((....(((...)))....))))).))))	chr11:116701188-116701412(+)$1	1	154	193	11.8280
((((....(((..(((((....))))).)))...)))))	chr19:10764124-10764402(-)$1	1	195	234	13.6836
)(((((((..((....((....))....))..)))))))	chr17:38278461-38278741(+)$1	1	131	170	16.6259
((((((((..(((..(((....)))..))).)))).)))	chr3:37284665-37284929(+)$1	1	134	173	14.3408
)).(((((.(((.(((((....)).))).))).))))).	chr17:17494764-17495104(-)$1	1	54	93	13.8068
((((((.(((((((((((....))..)))))))))))))	chr19:1605262-1605481(-)$1	1	76	115	14.5206
(((....(((((.((.((....)).))..))))))))))	chr6:33385301-33385552(-)$1	1	177	216	14.5039
(...(((..(((...(((....))).)))...))).)))	chr17:42398485-42398699(-)$1	1	42	81	15.3168
((((.(((((.(...(((....)))...).)))))))))	chr10:105727087-105727400(+)$1	1	45	84	14.8953
.((((..((...(((.((....)))))...))..)))).	chr20:35812516-35812758(+)$1	1	173	212	13.1452
((((.....(((((((((....)).)))))))...))))	chr14:102430855-102431112(+)$1	1	18	57	15.7969
(((((((.(((((((.((...)))))).))).)))))))	chr4:157892292-157892602(-)$1	1	102	141	12.9727
((.(((...((((..(((....)))..))))...))).)	chr4:152246569-152246822(-)$1	1	99	138	15.2548
).))).(((..(((((((....))))))))))(((((((	chr1:87380429-87380710(+)$1	1	89	128	12.5727
.(((((.(.(((...(((....)))...))).)))))).	chr10:102107739-102107996(+)$1	1	108	147	16.1050
.))((((((((((...((....))....)))))..))))	chr3:149093383-149093635(-)$1	1	80	119	14.9339
(((.((.(((((.((.((....)).)).))))).))..)	chr19:41859491-41859754(-)$1	1	136	175	14.0954
(((((.((((((((..((....))..)))))..))).))	chr8:98656817-98657070(+)$1	1	96	135	15.0873
(((((((...(((.(..(....)..).)))..)))...)	chr8:30669833-30670095(-)$1	1	46	85	15.2330
.(((((.(((((((.(((....))).))))))).)))))	chr19:3062276-3062529(-)$1	1	39	78	15.1080
.(((...(((((((..((....)))))))))...)))..	chr16:70719787-70720053(-)$1	1	64	103	17.8036
((.((((((...(((..(....)..)))....)))))))	chr3:51708290-51708566(+)$1	1	90	129	13.0224
((..((((((((.(.(((....))).))))))))).)))	chr2:36583393-36583659(+)$1	1	58	97	13.2439
(((...((((((..((((....))))...))))))))))	chr5:138629366-138629608(+)$1	1	140	179	12.0442
((..(((((.(((.((((....)))).))))))))..))	chrX:47003881-47004170(-)$1	1	73	112	12.3646
((((((((((.(.((.((....)).)).)))))))))))	chr10:72575621-72575861(+)$1	1	9	48	17.3110
(.(((..(((((.(((((....))))).)))))..))).	chr15:41853224-41853545(+)$1	1	268	307	12.1755
((.(.((.....(((.((....)).)))...))).))))	chr1:52520588-52520871(-)$1	1	88	127	15.0398
.(((.((((((((.(.((....))..).)))...))).)	chr7:45928030-45928272(+)$1	1	191	230	17.7665
((((((((..((((((.(....).))).)))....))))	chr16:58059995-58060279(+)$1	1	129	168	13.6617
.((((((((.(((..(((....)))....))).))))))	chr2:219157087-219157350(-)$1	1	151	190	14.1068
(((((((((((((((.((....)).))))))))))..))	chr7:91763590-91763876(-)$1	1	125	164	17.5198

#PSSM
d : 0.19	e : 0.17	g : 0.07	i : 0.07	[ : 0.07	c : 0.07	! : 0.05	= : 0.05	f : 0.05	: : 0.03	h : 0.03	3 : 0.01	C : 0.01	] : 0.01	
e : 0.19	d : 0.19	g : 0.13	i : 0.07	[ : 0.07	= : 0.05	h : 0.05	c : 0.05	! : 0.01	3 : 0.01	C : 0.01	" : 0.01	] : 0.01	b : 0.01	f : 0.01	
d : 0.19	e : 0.17	g : 0.15	c : 0.09	i : 0.05	h : 0.05	[ : 0.05	= : 0.03	! : 0.03	3 : 0.01	: : 0.01	" : 0.01	b : 0.01	a : 0.01	f : 0.01	
e : 0.19	c : 0.17	g : 0.15	d : 0.13	" : 0.05	h : 0.05	i : 0.03	f : 0.03	! : 0.03	$ : 0.01	# : 0.01	[ : 0.01	= : 0.01	a : 0.01	
c : 0.17	e : 0.13	[ : 0.11	d : 0.09	g : 0.09	h : 0.07	" : 0.05	b : 0.03	i : 0.03	$ : 0.03	# : 0.03	f : 0.03	! : 0.01	= : 0.01	
c : 0.15	e : 0.11	" : 0.09	g : 0.09	d : 0.07	b : 0.07	h : 0.07	! : 0.05	i : 0.03	$ : 0.03	# : 0.03	= : 0.03	a : 0.01	: : 0.01	[ : 0.01	f : 0.01	
c : 0.13	g : 0.13	[ : 0.13	" : 0.07	h : 0.07	e : 0.07	f : 0.05	! : 0.05	i : 0.05	$ : 0.03	# : 0.03	= : 0.03	b : 0.03	d : 0.01	
g : 0.17	e : 0.15	c : 0.13	" : 0.07	i : 0.07	h : 0.07	f : 0.05	$ : 0.05	! : 0.03	= : 0.03	# : 0.01	d : 0.01	b : 0.01	[ : 0.01	a : 0.01	
c : 0.13	e : 0.13	g : 0.11	! : 0.09	f : 0.07	i : 0.07	[ : 0.07	a : 0.05	" : 0.05	h : 0.05	$ : 0.03	= : 0.03	b : 0.01	
c : 0.15	e : 0.13	g : 0.11	[ : 0.09	" : 0.09	! : 0.09	d : 0.07	f : 0.05	i : 0.05	h : 0.03	= : 0.03	$ : 0.01	
c : 0.27	e : 0.13	g : 0.11	d : 0.09	" : 0.07	f : 0.05	i : 0.05	[ : 0.05	h : 0.03	b : 0.01	! : 0.01	$ : 0.01	= : 0.01	
c : 0.23	g : 0.15	e : 0.13	d : 0.11	f : 0.05	" : 0.05	i : 0.05	h : 0.03	b : 0.03	a : 0.03	! : 0.01	$ : 0.01	= : 0.01	
c : 0.21	d : 0.15	g : 0.15	[ : 0.11	e : 0.05	i : 0.05	# : 0.05	" : 0.05	! : 0.03	f : 0.01	h : 0.01	b : 0.01	= : 0.01	
! : 0.11	g : 0.11	" : 0.11	[ : 0.09	b : 0.09	c : 0.09	d : 0.07	e : 0.07	i : 0.05	# : 0.05	f : 0.01	h : 0.01	a : 0.01	= : 0.01	
! : 0.17	" : 0.11	c : 0.11	d : 0.09	b : 0.09	a : 0.05	e : 0.05	i : 0.05	g : 0.05	[ : 0.05	# : 0.05	h : 0.01	= : 0.01	
[ : 0.27	c : 0.25	! : 0.13	d : 0.09	g : 0.05	" : 0.05	# : 0.05	e : 0.03	i : 0.01	
b : 0.52	c : 0.23	d : 0.05	! : 0.05	[ : 0.03	g : 0.03	e : 0.03	
b : 0.56	c : 0.21	a : 0.07	d : 0.05	g : 0.03	e : 0.03	
m : 0.90	b : 0.03	d : 0.01	c : 0.01	l : 0.01	
m : 0.92	l : 0.07	
m : 0.92	l : 0.07	
m : 0.92	l : 0.05	b : 0.01	
b : 0.56	c : 0.21	a : 0.07	g : 0.03	e : 0.03	d : 0.03	m : 0.01	
b : 0.54	c : 0.21	d : 0.07	g : 0.03	] : 0.03	e : 0.03	2 : 0.03	
c : 0.27	] : 0.23	2 : 0.23	d : 0.09	g : 0.07	e : 0.03	4 : 0.03	
2 : 0.25	d : 0.11	c : 0.11	b : 0.09	g : 0.09	] : 0.07	4 : 0.07	e : 0.03	3 : 0.03	f : 0.01	h : 0.01	a : 0.01	= : 0.01	
c : 0.15	g : 0.13	d : 0.11	b : 0.09	e : 0.07	4 : 0.07	2 : 0.05	a : 0.05	i : 0.05	3 : 0.05	] : 0.03	f : 0.01	h : 0.01	= : 0.01	
] : 0.21	c : 0.15	g : 0.13	d : 0.11	4 : 0.07	3 : 0.07	i : 0.05	e : 0.03	2 : 0.03	h : 0.03	f : 0.01	= : 0.01	
c : 0.23	g : 0.15	d : 0.09	e : 0.09	4 : 0.07	i : 0.05	3 : 0.05	2 : 0.03	h : 0.03	b : 0.03	a : 0.03	f : 0.01	] : 0.01	= : 0.01	
c : 0.27	e : 0.13	g : 0.11	d : 0.09	3 : 0.07	i : 0.05	] : 0.03	f : 0.03	h : 0.03	b : 0.03	4 : 0.03	= : 0.03	
c : 0.21	e : 0.17	g : 0.11	] : 0.07	f : 0.05	d : 0.05	i : 0.05	3 : 0.05	h : 0.03	4 : 0.03	2 : 0.03	= : 0.03	b : 0.01	
e : 0.13	c : 0.11	3 : 0.11	] : 0.09	g : 0.09	4 : 0.07	2 : 0.07	i : 0.05	f : 0.03	d : 0.03	h : 0.03	b : 0.03	= : 0.03	a : 0.01	
e : 0.15	g : 0.13	c : 0.11	3 : 0.09	2 : 0.07	i : 0.07	f : 0.05	a : 0.05	4 : 0.03	d : 0.03	h : 0.03	] : 0.03	= : 0.03	b : 0.01	
c : 0.13	e : 0.13	2 : 0.11	g : 0.11	] : 0.09	3 : 0.09	i : 0.07	f : 0.05	4 : 0.03	h : 0.03	= : 0.03	d : 0.01	a : 0.01	
c : 0.17	g : 0.15	e : 0.13	2 : 0.07	] : 0.07	i : 0.07	f : 0.05	d : 0.05	4 : 0.03	h : 0.03	= : 0.03	a : 0.01	3 : 0.01	b : 0.01	
e : 0.15	g : 0.13	c : 0.11	d : 0.11	] : 0.09	i : 0.05	h : 0.05	f : 0.03	b : 0.03	= : 0.03	: : 0.03	3 : 0.03	2 : 0.03	4 : 0.01	
e : 0.17	g : 0.13	d : 0.13	c : 0.11	2 : 0.07	h : 0.07	i : 0.05	= : 0.05	3 : 0.03	f : 0.03	b : 0.01	4 : 0.01	: : 0.01	] : 0.01	
e : 0.19	d : 0.15	g : 0.13	h : 0.07	] : 0.05	i : 0.05	= : 0.05	3 : 0.05	f : 0.05	2 : 0.03	c : 0.03	4 : 0.01	F : 0.01	D : 0.01	
d : 0.19	e : 0.17	g : 0.13	h : 0.07	i : 0.05	] : 0.05	= : 0.05	c : 0.03	: : 0.03	f : 0.03	4 : 0.01	F : 0.01	D : 0.01	a : 0.01	3 : 0.01	b : 0.01	

#score	748.8262672968258
#seq	51
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_transcript_m3_run1.txt

#BEAR
f[bb!!cccmmmmccc4444bb2	chrM:14252-14487(-)$1	235	19	42	8.9305
!!bb!!cccmmmmccc]bb]ccc	chr11:62294319-62294593(-)$1	274	73	96	8.5393
ccc"""cccmmmmccc]cccfff	chr5:79946944-79947198(-)$1	254	115	138	9.3885
ii"""ddddmmmmdddd22iiii	chr2:190339931-190340257(+)$1	326	250	273	13.2750
[a!!bbddddllldddd]bb22a	chr5:70806029-70806277(+)$1	248	113	136	9.4034
eeee[ddddmmmmdddd]eeeee	chr21:34931479-34931768(+)$1	289	17	40	11.6658
b####ddddmmmmdddd4444bb	chr17:56080818-56081051(-)$1	233	6	29	12.6435
eee"""cccmmmmccc333eeee	chrM:3087-3289(+)$1	202	176	199	9.7591
cc"""ddddmmmmdddd]ccc::	chr21:34921813-34922083(+)$1	270	116	139	11.5421
d"""eeeeemmmmeeeee333dd	chr12:46357788-46358061(-)$1	273	85	108	9.2706
==========lll==========	chr11:62293185-62293427(-)$1	242	169	192	7.8913
eeee[ddddoooooodddd333e	chrM:12622-12843(+)$1	221	150	173	9.7742
iiiiiiiiimmmmiiiiiiiii3	chr17:62498186-62498441(-)$1	255	164	187	8.3731
dddd!!ddddllldddd22dddd	chr5:171368129-171368428(-)$1	299	151	174	10.1121
"""ccccccmmmmccc]cccbbg	chrM:9885-10090(+)$1	205	64	87	8.4482
dd"""ddddmmmmdddd]dddd9	chr16:20687273-20687649(+)$1	376	162	185	11.7960
ddd!!ddddmmmmdddd22dddd	chr7:119433270-119433519(-)$1	249	53	76	12.1577
a[cccddddmmmmdddd]ccc]a	chrM:9802-10037(+)$1	235	164	187	12.4090
fff!!ddddmmmmdddd333fff	chr16:47328272-47328575(-)$1	303	119	142	12.6245
ccc!!ddddmmmmdddd22ccc]	chr18:39556632-39556968(+)$1	336	300	323	13.1604
a!!ddddoooooodddd22addd	chr2:55253846-55254193(-)$1	347	159	182	9.0569
ee"""ddddnnnnnddddeeeee	chr3:37365765-37366020(+)$1	255	169	192	9.2382
f####ddddoooooodddd]fff	chr6:35837484-35837745(-)$1	261	165	188	9.7147
ddd!!ddddmmmmdddd22dddd	chr7:91623834-91624063(+)$1	229	40	63	12.1577
b"""eeeeemmmmeeeee333bb	chr1:165723364-165723613(-)$1	249	89	112	8.9400
[ccc[ddddllldddd]cccbb]	chr7:26233143-26233355(-)$1	212	42	65	9.8361
ccc"""ddddllldddd]cccee	chr7:77378758-77379101(+)$1	343	132	155	11.4135
ccc!!ddddmmmmdddd]cccBB	chr11:65191179-65191399(+)$1	220	52	75	11.2302
bb"""ddddnnnnndddd4444b	chr6:87970248-87970555(+)$1	307	51	74	9.5550
cc!!eeeeemmmmeeeee22ccc	chr3:180665551-180665818(+)$1	267	123	146	8.8863
:ccc!!ddddllldddd333ccc	chr17:65900716-65900974(+)$1	258	205	228	10.7280
ccc"""ddddllldddd]ccc22	chr16:8997030-8997358(-)$1	328	238	261	11.2702
[ccc!!ddddllldddd22ccc]	chr8:30938619-30938886(+)$1	267	149	172	11.3690
a[cccddddmmmmdddd]ccc]a	chrM:9842-10050(+)$1	208	124	147	12.4090
hhhh[ddddmmmmddddhhhhhh	chrM:14416-14644(-)$1	228	15	38	10.3942
hhhhhddddmmmmdddd]hhhhh	chr11:65268142-65268351(+)$1	209	151	174	10.2404
gggg[ddddmmmmddddgggggg	chr20:33618554-33618891(-)$1	337	258	281	11.9825
eeee[ddddmmmmddddeeeeec	chr22:22890177-22890430(-)$1	253	156	179	11.2202
=========mmmm==========	chr10:17279196-17279548(+)$1	352	291	314	8.8661
eeee[ddddoooooodddd333e	chrM:12653-12861(+)$1	208	119	142	9.7742
eeee[ddddoooooodddd333e	chrM:12643-12853(+)$1	210	129	152	9.7742
a[cccddddmmmmdddd]ccc]a	chrM:9856-10085(+)$1	229	110	133	12.4090
a[cccddddmmmmdddd]ccc]a	chrM:9790-10002(+)$1	212	176	199	12.4090
d####ddddmmmmdddd666666	chr12:21789969-21790229(-)$1	260	85	108	10.2452
hhhhhddddmmmmdddd]hhhhh	chr11:65268151-65268357(+)$1	206	142	165	10.2404
eeee!!cccmmmmccc]eeeee]	chrX:70586278-70586576(+)$1	298	200	223	8.5553
hhhh[ddddmmmmddddhhhhhh	chrM:14452-14671(-)$1	219	42	65	10.3942
eeee[ddddmmmmdddd]eeeee	chr2:187368820-187369039(+)$1	219	145	168	11.6658
=====[cccmmmmccc]======	chrM:14367-14602(-)$1	235	107	130	9.3704
a[cccddddmmmmdddd]ccc]a	chrM:9850-10056(+)$1	206	116	139	12.4090
b####ddddmmmmdddd>>>>>>	chr8:91283668-91283972(+)$1	304	246	269	11.6012
ffff!!ddddlllddddffffff	chr5:134260124-134260399(+)$1	275	88	111	9.0958
ggg!!ddddmmmmdddd22gggg	chr12:46320163-46320474(-)$1	311	229	252	12.8648
[ccc[ddddoooooodddd4444	chr6:10940969-10941272(+)$1	303	38	61	10.0932
dd"""ddddnnnnndddd333dd	chr3:6618194-6618466(+)$1	272	114	137	10.1331
eee"""ddddllldddd333eee	chr5:10264737-10265057(+)$1	320	107	130	11.4911
%%bb[ddddmmmmddddbb333d	chr7:119427019-119427281(-)$1	262	207	230	10.0644
[ccc[ddddllldddd]cccbb]	chr7:26233155-26233376(-)$1	221	63	86	9.8361
ddd!!ddddmmmmdddd22dddd	chr7:119433319-119433575(-)$1	256	109	132	12.1577

#otherMatches

#Seq PSSM
UACUACAGCGAUGGCUAUUGAGG	chrM:14252-14487(-)$1	235	19	42	8.9305
GAUGUUGAUCUAAAUCUCAAAGG	chr11:62294319-62294593(-)$1	274	73	96	8.5393
GUUGAACAGGGCCCUGAAGCGCG	chr5:79946944-79947198(-)$1	254	115	138	9.3885
UGAUUGUAUGUUGAUAUUCUAAA	chr2:190339931-190340257(+)$1	326	250	273	13.2750
GGAAGACACCAGAGGUGAUUGAU	chr5:70806029-70806277(+)$1	248	113	136	9.4034
AGCGUAAGAUUUAUCUUUUGUUU	chr21:34931479-34931768(+)$1	289	17	40	11.6658
CAAUCUCCUUGGAAGGAUUCAGC	chr17:56080818-56081051(-)$1	233	6	29	12.6435
cuuaaaacuuuacagucagaggu	chrM:3087-3289(+)$1	202	176	199	9.7591
ACAGCCAGAAGAAUCUGAGUCAA	chr21:34921813-34922083(+)$1	270	116	139	11.5421
UAUAGGAAACCCUUUUCCAAAGA	chr12:46357788-46358061(-)$1	273	85	108	9.2706
CAUUGAUGUCCCAGAUGUUAAUG	chr11:62293185-62293427(-)$1	242	169	192	7.8913
GGCGUAGGAAUUAUAUCCUUCUU	chrM:12622-12843(+)$1	221	150	173	9.7742
AAAUAUUUCAAAUGAAGUAUUUU	chr17:62498186-62498441(-)$1	255	164	187	8.3731
guuuaaaugaauaucauaaaagc	chr5:171368129-171368428(-)$1	299	151	174	10.1121
UUUGACUAUUUCUGUAUGUCUCC	chrM:9885-10090(+)$1	205	64	87	8.4482
cccagucucaccugagaaggaga	chr16:20687273-20687649(+)$1	376	162	185	11.7960
ucaccugugaagacacauaugga	chr7:119433270-119433519(-)$1	249	53	76	12.1577
GUCUCCAUCUAUUGAUGAGGGUC	chrM:9802-10037(+)$1	235	164	187	12.4090
caaaacuuugaugaaagaaauug	chr16:47328272-47328575(-)$1	303	119	142	12.6245
CUUAAGAUCUGAGGAUUGAGAGG	chr18:39556632-39556968(+)$1	336	300	323	13.1604
GAAGAUAGUGAUAUGUUGGCUGC	chr2:55253846-55254193(-)$1	347	159	182	9.0569
GUACUGAGUUAGAUGCUCACAAA	chr3:37365765-37366020(+)$1	255	169	192	9.2382
AAUUAUACUCAGAACAGUAAUAA	chr6:35837484-35837745(-)$1	261	165	188	9.7147
GUUACCUGUAAUAAUAGUCAAUU	chr7:91623834-91624063(+)$1	229	40	63	12.1577
UAAUUCUUUGCAGAGAGACAAGA	chr1:165723364-165723613(-)$1	249	89	112	8.9400
UGGCAAUUUUGGAGGUAGCCCCG	chr7:26233143-26233355(-)$1	212	42	65	9.8361
CUGAUGUUGAAGAUCAAGCAGCC	chr7:77378758-77379101(+)$1	343	132	155	11.4135
CAGUAAGCCGAGUGGCUGUUGGA	chr11:65191179-65191399(+)$1	220	52	75	11.2302
CCAAGCACAGCAGAUGUGGAAAG	chr6:87970248-87970555(+)$1	307	51	74	9.5550
AAGAGCCAUGUGGGUGGUGGUUG	chr3:180665551-180665818(+)$1	267	123	146	8.8863
UACUAAUGUGAAUUACAGAAAGU	chr17:65900716-65900974(+)$1	258	205	228	10.7280
GUACCGGUCCCGUGGAUAUACCC	chr16:8997030-8997358(-)$1	328	238	261	11.2702
CUCAGGAAGAAUAUCUUAGUGAU	chr8:30938619-30938886(+)$1	267	149	172	11.3690
GUCUCCAUCUAUUGAUGAGGGUC	chrM:9842-10050(+)$1	208	124	147	12.4090
UUUGUGGGGUUUUCUUCUAAGCC	chrM:14416-14644(-)$1	228	15	38	10.3942
UUAUUUAUUUUCUAAUAUAAUGG	chr11:65268142-65268351(+)$1	209	151	174	10.2404
agauuguguaaaugcauauuucu	chr20:33618554-33618891(-)$1	337	258	281	11.9825
UGUGAUCUUUGGGGAGAUACAUC	chr22:22890177-22890430(-)$1	253	156	179	11.2202
GAAUACUUUUUAAAAGGUAUUUU	chr10:17279196-17279548(+)$1	352	291	314	8.8661
GGCGUAGGAAUUAUAUCCUUCUU	chrM:12653-12861(+)$1	208	119	142	9.7742
GGCGUAGGAAUUAUAUCCUUCUU	chrM:12643-12853(+)$1	210	129	152	9.7742
GUCUCCAUCUAUUGAUGAGGGUC	chrM:9856-10085(+)$1	229	110	133	12.4090
GUCUCCAUCUAUUGAUGAGGGUC	chrM:9790-10002(+)$1	212	176	199	12.4090
UUAUAAUUUUUUUAAGUGCCUAU	chr12:21789969-21790229(-)$1	260	85	108	10.2452
UUAUUUAUUUUCUAAUAUAAUGG	chr11:65268151-65268357(+)$1	206	142	165	10.2404
CAUGGGUGCGGGAGCAACGUGGC	chrX:70586278-70586576(+)$1	298	200	223	8.5553
UUUGUGGGGUUUUCUUCUAAGCC	chrM:14452-14671(-)$1	219	42	65	10.3942
UAAAAACUGAAAGCAGUAUUUAU	chr2:187368820-187369039(+)$1	219	145	168	11.6658
AGGGGGAAUGAUGGUUGUCUUUG	chrM:14367-14602(-)$1	235	107	130	9.3704
GUCUCCAUCUAUUGAUGAGGGUC	chrM:9850-10056(+)$1	206	116	139	12.4090
gaaggugaggggacucagacauu	chr8:91283668-91283972(+)$1	304	246	269	11.6012
UGAUUCGGGAGGAUCCUAUUGGU	chr5:134260124-134260399(+)$1	275	88	111	9.0958
GAGGCACUUACAGAAGUAGUUUU	chr12:46320163-46320474(-)$1	311	229	252	12.8648
auguguucaucgauuugaaagug	chr6:10940969-10941272(+)$1	303	38	61	10.0932
accaauauaugaauuauagaagu	chr3:6618194-6618466(+)$1	272	114	137	10.1331
AUGAUUUUGAAGAUUGAUGACAU	chr5:10264737-10265057(+)$1	320	107	130	11.4911
guggacauugaaaaaugcucaac	chr7:119427019-119427281(-)$1	262	207	230	10.0644
UGGCAAUUUUGGAGGUAGCCCCG	chr7:26233155-26233376(-)$1	221	63	86	9.8361
ucaccugugaagacacauaugga	chr7:119433319-119433575(-)$1	256	109	132	12.1577

#DB
(.((..(((....)))....)).	chrM:14252-14487(-)$1	1	19	42	8.9305
..((..(((....))).)).)))	chr11:62294319-62294593(-)$1	1	73	96	8.5393
(((...(((....))).))))))	chr5:79946944-79947198(-)$1	1	115	138	9.3885
((...((((....))))..))))	chr2:190339931-190340257(+)$1	1	250	273	13.2750
.(..((((((...)))).))..)	chr5:70806029-70806277(+)$1	1	113	136	9.4034
((((.((((....)))).)))))	chr21:34931479-34931768(+)$1	1	17	40	11.6658
(....((((....))))....))	chr17:56080818-56081051(-)$1	1	6	29	12.6435
(((...(((....)))...))))	chrM:3087-3289(+)$1	1	176	199	9.7591
((...((((....)))).)))..	chr21:34921813-34922083(+)$1	1	116	139	11.5421
(...(((((....)))))...))	chr12:46357788-46358061(-)$1	1	85	108	9.2706
((((((((((...))))))))))	chr11:62293185-62293427(-)$1	1	169	192	7.8913
((((.((((......))))...)	chrM:12622-12843(+)$1	1	150	173	9.7742
(((((((((....))))))))).	chr17:62498186-62498441(-)$1	1	164	187	8.3731
((((..((((...))))..))))	chr5:171368129-171368428(-)$1	1	151	174	10.1121
...((((((....))).))))))	chrM:9885-10090(+)$1	1	64	87	8.4482
((...((((....)))).)))).	chr16:20687273-20687649(+)$1	1	162	185	11.7960
(((..((((....))))..))))	chr7:119433270-119433519(-)$1	1	53	76	12.1577
(.(((((((....)))).))).)	chrM:9802-10037(+)$1	1	164	187	12.4090
(((..((((....))))...)))	chr16:47328272-47328575(-)$1	1	119	142	12.6245
(((..((((....))))..))).	chr18:39556632-39556968(+)$1	1	300	323	13.1604
(..((((......))))..)(((	chr2:55253846-55254193(-)$1	1	159	182	9.0569
((...((((.....)))))))))	chr3:37365765-37366020(+)$1	1	169	192	9.2382
(....((((......)))).)))	chr6:35837484-35837745(-)$1	1	165	188	9.7147
(((..((((....))))..))))	chr7:91623834-91624063(+)$1	1	40	63	12.1577
(...(((((....)))))...))	chr1:165723364-165723613(-)$1	1	89	112	8.9400
.(((.((((...)))).))))).	chr7:26233143-26233355(-)$1	1	42	65	9.8361
(((...((((...)))).)))((	chr7:77378758-77379101(+)$1	1	132	155	11.4135
(((..((((....)))).)))))	chr11:65191179-65191399(+)$1	1	52	75	11.2302
((...((((.....))))....)	chr6:87970248-87970555(+)$1	1	51	74	9.5550
((..(((((....)))))..)))	chr3:180665551-180665818(+)$1	1	123	146	8.8863
.(((..((((...))))...)))	chr17:65900716-65900974(+)$1	1	205	228	10.7280
(((...((((...)))).)))..	chr16:8997030-8997358(-)$1	1	238	261	11.2702
.(((..((((...))))..))).	chr8:30938619-30938886(+)$1	1	149	172	11.3690
(.(((((((....)))).))).)	chrM:9842-10050(+)$1	1	124	147	12.4090
((((.((((....))))))))))	chrM:14416-14644(-)$1	1	15	38	10.3942
(((((((((....)))).)))))	chr11:65268142-65268351(+)$1	1	151	174	10.2404
((((.((((....))))))))))	chr20:33618554-33618891(-)$1	1	258	281	11.9825
((((.((((....)))))))))(	chr22:22890177-22890430(-)$1	1	156	179	11.2202
(((((((((....))))))))))	chr10:17279196-17279548(+)$1	1	291	314	8.8661
((((.((((......))))...)	chrM:12653-12861(+)$1	1	119	142	9.7742
((((.((((......))))...)	chrM:12643-12853(+)$1	1	129	152	9.7742
(.(((((((....)))).))).)	chrM:9856-10085(+)$1	1	110	133	12.4090
(.(((((((....)))).))).)	chrM:9790-10002(+)$1	1	176	199	12.4090
(....((((....))))......	chr12:21789969-21790229(-)$1	1	85	108	10.2452
(((((((((....)))).)))))	chr11:65268151-65268357(+)$1	1	142	165	10.2404
((((..(((....))).))))).	chrX:70586278-70586576(+)$1	1	200	223	8.5553
((((.((((....))))))))))	chrM:14452-14671(-)$1	1	42	65	10.3942
((((.((((....)))).)))))	chr2:187368820-187369039(+)$1	1	145	168	11.6658
(((((.(((....))).))))))	chrM:14367-14602(-)$1	1	107	130	9.3704
(.(((((((....)))).))).)	chrM:9850-10056(+)$1	1	116	139	12.4090
(....((((....))))......	chr8:91283668-91283972(+)$1	1	246	269	11.6012
((((..((((...))))))))))	chr5:134260124-134260399(+)$1	1	88	111	9.0958
(((..((((....))))..))))	chr12:46320163-46320474(-)$1	1	229	252	12.8648
.(((.((((......))))....	chr6:10940969-10941272(+)$1	1	38	61	10.0932
((...((((.....))))...))	chr3:6618194-6618466(+)$1	1	114	137	10.1331
(((...((((...))))...)))	chr5:10264737-10265057(+)$1	1	107	130	11.4911
..((.((((....))))))...)	chr7:119427019-119427281(-)$1	1	207	230	10.0644
.(((.((((...)))).))))).	chr7:26233155-26233376(-)$1	1	63	86	9.8361
(((..((((....))))..))))	chr7:119433319-119433575(-)$1	1	109	132	12.1577

#PSSM
e : 0.16	d : 0.13	c : 0.11	a : 0.10	[ : 0.08	f : 0.06	b : 0.06	h : 0.06	= : 0.05	i : 0.03	g : 0.03	! : 0.01	" : 0.01	: : 0.01	% : 0.01	
c : 0.20	e : 0.16	[ : 0.10	d : 0.10	# : 0.06	h : 0.06	" : 0.05	= : 0.05	! : 0.03	i : 0.03	f : 0.03	g : 0.03	a : 0.01	b : 0.01	% : 0.01	
c : 0.25	" : 0.15	e : 0.15	# : 0.06	d : 0.06	h : 0.06	b : 0.05	! : 0.05	= : 0.05	f : 0.03	g : 0.03	i : 0.01	
" : 0.22	c : 0.18	! : 0.15	e : 0.11	# : 0.06	h : 0.06	b : 0.05	= : 0.05	d : 0.03	i : 0.01	g : 0.01	f : 0.01	
! : 0.23	[ : 0.22	" : 0.18	c : 0.10	# : 0.06	e : 0.05	= : 0.05	h : 0.03	b : 0.01	i : 0.01	d : 0.01	
d : 0.64	! : 0.11	" : 0.08	e : 0.05	= : 0.03	b : 0.01	i : 0.01	c : 0.01	[ : 0.01	
d : 0.77	c : 0.11	e : 0.05	= : 0.03	i : 0.01	
d : 0.76	c : 0.11	e : 0.05	= : 0.03	i : 0.01	o : 0.01	
d : 0.76	c : 0.11	e : 0.05	= : 0.03	i : 0.01	o : 0.01	
m : 0.66	d : 0.13	o : 0.10	n : 0.05	l : 0.03	= : 0.01	
m : 0.66	l : 0.18	o : 0.10	n : 0.05	
m : 0.66	l : 0.18	o : 0.10	n : 0.05	
m : 0.66	l : 0.15	o : 0.10	n : 0.05	d : 0.03	
d : 0.64	c : 0.11	o : 0.08	e : 0.05	n : 0.05	= : 0.03	i : 0.01	
d : 0.69	c : 0.11	o : 0.08	e : 0.05	= : 0.03	i : 0.01	
d : 0.77	c : 0.11	e : 0.05	= : 0.03	i : 0.01	
d : 0.74	] : 0.11	e : 0.05	= : 0.03	4 : 0.01	3 : 0.01	i : 0.01	
] : 0.25	2 : 0.15	d : 0.13	e : 0.08	c : 0.06	3 : 0.06	= : 0.05	4 : 0.03	b : 0.03	h : 0.03	i : 0.01	g : 0.01	6 : 0.01	> : 0.01	f : 0.01	
c : 0.22	2 : 0.16	3 : 0.11	d : 0.10	e : 0.08	h : 0.06	4 : 0.05	b : 0.05	= : 0.05	i : 0.01	g : 0.01	6 : 0.01	> : 0.01	f : 0.01	
c : 0.25	3 : 0.16	e : 0.10	d : 0.08	4 : 0.06	h : 0.06	= : 0.05	] : 0.03	i : 0.03	g : 0.03	b : 0.01	a : 0.01	2 : 0.01	6 : 0.01	> : 0.01	f : 0.01	
c : 0.23	e : 0.11	3 : 0.11	d : 0.10	b : 0.06	f : 0.06	h : 0.06	4 : 0.05	= : 0.05	i : 0.03	g : 0.03	2 : 0.01	6 : 0.01	> : 0.01	
e : 0.13	d : 0.13	b : 0.10	c : 0.08	] : 0.08	f : 0.06	3 : 0.06	h : 0.06	= : 0.05	i : 0.03	2 : 0.03	4 : 0.03	g : 0.03	: : 0.01	B : 0.01	6 : 0.01	> : 0.01	
e : 0.15	d : 0.13	a : 0.10	] : 0.08	c : 0.06	f : 0.06	h : 0.06	b : 0.05	= : 0.05	g : 0.05	2 : 0.03	i : 0.01	: : 0.01	3 : 0.01	9 : 0.01	B : 0.01	6 : 0.01	> : 0.01	4 : 0.01	

#score	624.2594929715118
#seq	59
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_transcript_m3_run2.txt

#BEAR
[eeeeeqqqqqqqqeeeee	chr1:246416220-246416502(-)$1	282	234	253	14.6175
ddd[bbqqqqqqqqbb]dd	chr8:121646094-121646422(-)$1	328	282	301	13.2018
:eeeeeqqqqqqqqeeeee	chr2:71622860-71623116(+)$1	256	219	238	13.4821
ffffffqqqqqqqqfffff	chr17:56080611-56080871(-)$1	260	170	189	14.5539
ccc!!aqqqqqqqqa22cc	chr8:602700-602993(-)$1	293	165	184	13.4857
ggggggqqqqqqqqggggg	chr7:76188255-76188538(+)$1	283	11	30	14.6188
cc[cccqqqqqqqqccc]c	chr5:122344802-122345107(+)$1	305	149	168	14.5698
ggggggqqqqqqqqggggg	chr11:65203450-65203695(+)$1	245	147	166	14.6188
ccddddqqqqqqqqdddd]	chr20:18274641-18274899(+)$1	258	97	116	13.4047
ggggggqqqqqqqqggggg	chr2:130783384-130783671(-)$1	287	119	138	14.6188
dddd[aqqqqqqqqa]ddd	chr15:25281540-25281832(+)$1	292	87	106	13.2945
ggggggqqqqqqqqggggg	chr14:37933871-37934145(+)$1	274	68	87	14.6188
ceeeeeqqqqqqqqeeeee	chr6:2025201-2025525(-)$1	324	33	52	14.5044
feeeeeqqqqqqqqeeeee	chr17:53371902-53372135(+)$1	233	127	146	14.5209
ggggggqqqqqqqqggggg	chr6:128614045-128614455(-)$1	410	296	315	14.6188
$eeeeeqqqqqqqqeeeee	chr2:216213178-216213421(+)$1	243	125	144	14.2863
hh!!bbqqqqqqqqbb333	chr11:65195662-65195880(+)$1	218	25	44	13.5637
"eeeeeqqqqqqqqeeeee	chrX:41209443-41209696(+)$1	253	164	183	14.4999
iiiiiiqqqqqqqqiiiii	chr16:89465610-89465853(-)$1	243	151	170	14.2755
ffffffqqqqqqqqfffff	chr8:97569943-97570220(+)$1	277	211	230	14.5539
iiiiiiqqqqqqqqiiiii	chr12:11308359-11308598(-)$1	239	185	204	14.2755
ddddddqqqqqqqqdddd]	chr20:33641733-33642085(-)$1	352	227	246	13.1483
ffffffqqqqqqqqfffff	chr13:33078235-33078514(-)$1	279	150	169	14.5539
[a!!bbqqqqqqqqbb22a	chr11:65271055-65271271(+)$1	216	156	175	13.4263
ccddddqqqqqqqqdddd]	chr4:78987752-78988066(+)$1	314	254	273	13.4047
beeeeeqqqqqqqqeeeee	chr4:166327327-166327587(+)$1	260	146	165	14.2688
[bb[bbqqqqqqqqbb333	chr12:11275919-11276203(-)$1	284	231	250	13.4247
ggggggqqqqqqqqggggg	chr13:20273134-20273422(-)$1	288	2	21	14.6188
ffff[aqqqqqqqqa22ff	chr17:70533010-70533267(-)$1	257	54	73	13.8593
cc[cccqqqqqqqqccc]c	chr11:57585855-57586133(+)$1	278	125	144	14.5698
ffffffqqqqqqqqfffff	chr18:67277339-67277620(+)$1	281	123	142	14.5539
!eeeeeqqqqqqqqeeeee	chr8:17758678-17758918(-)$1	240	142	161	14.5710
ccccccqqqqqqqqccc33	chr3:37906373-37906710(+)$1	337	249	268	14.4626
"eeeeeqqqqqqqqeeeee	chr11:68147696-68147980(+)$1	284	17	36	14.4999
[eeeeeqqqqqqqqeeeee	chr19:56152604-56152893(+)$1	289	193	212	14.6175
====bbqqqqqqqqbb]==	chr7:105586926-105587206(+)$1	280	20	39	13.9235
ffffffqqqqqqqqfffff	chr8:125703238-125703512(-)$1	274	145	164	14.5539
dddcccqqqqqqqqccc]d	chr7:95856429-95856708(-)$1	279	137	156	14.0311
ffffffqqqqqqqqfffff	chr16:87941474-87941762(-)$1	288	128	147	14.5539
!eeeeeqqqqqqqqeeeee	chr16:24566162-24566431(+)$1	269	62	81	14.5710
ee[cccqqqqqqqqcccee	chr17:53400818-53401046(+)$1	228	205	224	14.5516
eeeeeaqqqqqqqqa]eee	chr6:42749819-42750085(+)$1	266	2	21	14.2776
ccddddqqqqqqqqdddd]	chr13:34073281-34073552(-)$1	271	23	42	13.4047
"""cccqqqqqqqqccc]=	chr8:18715607-18715890(-)$1	283	11	30	14.3524
[eeeeeqqqqqqqqeeeee	chr11:65194810-65195052(+)$1	242	185	204	14.6175
b!!cccqqqqqqqqccc22	chr10:93591858-93592177(+)$1	319	26	45	13.9255
ffffffqqqqqqqqfffff	chr2:202004752-202005025(+)$1	273	126	145	14.5539
heeeeeqqqqqqqqeeeee	chr1:90401472-90401745(+)$1	273	40	59	14.3002
ggggggqqqqqqqqggggg	chr8:81039685-81040004(-)$1	319	291	310	14.6188
ffffffqqqqqqqqfffff	chr1:35990110-35990391(-)$1	281	144	163	14.5539
[eeeeeqqqqqqqqeeeee	chr11:65194852-65195058(+)$1	206	143	162	14.6175
ff!!bbqqqqqqqqbb22f	chr8:17761481-17761695(-)$1	214	114	133	13.6341
dddcccqqqqqqqqccc]d	chr16:78889366-78889637(+)$1	271	123	142	14.0311
ffffffqqqqqqqqfffff	chr14:39819757-39820011(+)$1	254	178	197	14.5539
bb[cccqqqqqqqqccc22	chr12:11290486-11290756(-)$1	270	25	44	13.7278
ffffffqqqqqqqqfffff	chr9:114980724-114980984(-)$1	260	75	94	14.5539
ggggggqqqqqqqqggggg	chr7:3520273-3520537(+)$1	264	160	179	14.6188
cc[cccqqqqqqqqccccc	chr7:1110734-1111023(-)$1	289	111	130	14.3864
dd!!bbqqqqqqqqbb22d	chr2:201226406-201226662(+)$1	256	184	203	13.1270
ffffffqqqqqqqqfffff	chr19:42375392-42375661(+)$1	269	10	29	14.5539
:eeeeeqqqqqqqqeeeee	chr17:53372278-53372530(+)$1	252	131	150	13.4821
fff[bbqqqqqqqqbb]ff	chr20:46205225-46205507(+)$1	282	238	257	13.9561
"""cccqqqqqqqqccc33	chr2:188387608-188387834(+)$1	226	123	142	14.3267
dd!!bbqqqqqqqqbb]dd	chr11:65202020-65202230(+)$1	210	161	180	13.3271
b[ddddqqqqqqqqddddb	chr1:45601720-45602015(-)$1	295	96	115	12.8085
ggddddqqqqqqqqdddd3	chr6:16393258-16393548(-)$1	290	201	220	13.4872
[eeeeeqqqqqqqqeeeee	chr7:32802443-32802718(+)$1	275	107	126	14.6175
ffffffqqqqqqqqfffff	chr8:17761301-17761525(-)$1	224	136	155	14.5539
ee[cccqqqqqqqqccc22	chr10:92987728-92988036(+)$1	308	264	283	14.1811
ffffffqqqqqqqqfffff	chr17:56080473-56080734(-)$1	261	33	52	14.5539
iiiiiiqqqqqqqqiiiii	chrX:154841555-154841837(-)$1	282	21	40	14.2755
ddd[bbqqqqqqqqbb]dd	chr3:82089853-82090119(+)$1	266	122	141	13.2018
ffffffqqqqqqqqfffff	chr21:46919158-46919463(+)$1	305	110	129	14.5539
%bbcccqqqqqqqqccc]b	chr5:139900434-139900726(+)$1	292	183	202	12.9241
ffffffqqqqqqqqfffff	chr1:115259315-115259615(-)$1	300	55	74	14.5539
eeecccqqqqqqqqccc]e	chr1:46083825-46084098(+)$1	273	60	79	14.5577
ffff[aqqqqqqqqa]fff	chr6:1909449-1909724(-)$1	275	54	73	14.3206

#otherMatches

#Seq PSSM
UAAAUAUUAAACAUUAUUU	chr1:246416220-246416502(-)$1	282	234	253	14.6175
aguuuccuaguuuugauac	chr8:121646094-121646422(-)$1	328	282	301	13.2018
cuguaugccuuuugauaca	chr2:71622860-71623116(+)$1	256	219	238	13.4821
UUUUAUUGUUAAUUGUAAA	chr17:56080611-56080871(-)$1	260	170	189	14.5539
ccuuugucuaucuucuuag	chr8:602700-602993(-)$1	293	165	184	13.4857
UAAAUAUUACACAUUGUUU	chr7:76188255-76188538(+)$1	283	11	30	14.6188
GUCUGUUUacacacacaca	chr5:122344802-122345107(+)$1	305	149	168	14.5698
GGCUCUUACCUCAUAGGGU	chr11:65203450-65203695(+)$1	245	147	166	14.6188
gacuuuacaauggagaagc	chr20:18274641-18274899(+)$1	258	97	116	13.4047
UAAUCUUUGAAGCCAGAUU	chr2:130783384-130783671(-)$1	287	119	138	14.6188
ACUCACAAAAUACAGCGAG	chr15:25281540-25281832(+)$1	292	87	106	13.2945
aaaaauaaaaaUGAAUUUU	chr14:37933871-37934145(+)$1	274	68	87	14.6188
ACAAAUGGAAACAAAUUUG	chr6:2025201-2025525(-)$1	324	33	52	14.5044
GCCUUGUGAGUACUCAAGG	chr17:53371902-53372135(+)$1	233	127	146	14.5209
gcuaauacacaccaguugg	chr6:128614045-128614455(-)$1	410	296	315	14.6188
UUUUUUUCCUUAAUGAAAA	chr2:216213178-216213421(+)$1	243	125	144	14.2863
GCAAAUUAAAAGUUAUGGG	chr11:65195662-65195880(+)$1	218	25	44	13.5637
GUAUUUGCAAUGAAAGAUG	chrX:41209443-41209696(+)$1	253	164	183	14.4999
UGAGUGUCUUGGGUCACUU	chr16:89465610-89465853(-)$1	243	151	170	14.2755
GUACUGGAGGAACACAGUG	chr8:97569943-97570220(+)$1	277	211	230	14.5539
uaaugcccaugguaguauu	chr12:11308359-11308598(-)$1	239	185	204	14.2755
AUAGCCAGGAAUUGGGCUg	chr20:33641733-33642085(-)$1	352	227	246	13.1483
CUUAACACUGGUUAGUUGA	chr13:33078235-33078514(-)$1	279	150	169	14.5539
CGAACACUCUUUAAUGGAC	chr11:65271055-65271271(+)$1	216	156	175	13.4263
GUAUCUUAGAGUCUAGAUA	chr4:78987752-78988066(+)$1	314	254	273	13.4047
GCUGCCAAUCGCCCGGUAG	chr4:166327327-166327587(+)$1	260	146	165	14.2688
aauaucauaaucaaggacc	chr12:11275919-11276203(-)$1	284	231	250	13.4247
GUUUUUUAAAUAccaaaag	chr13:20273134-20273422(-)$1	288	2	21	14.6188
CAAACCUGGGACCUGAUUU	chr17:70533010-70533267(-)$1	257	54	73	13.8593
UGUUACUUCCUUAUGUAUC	chr11:57585855-57586133(+)$1	278	125	144	14.5698
aauguagguaaaaguauau	chr18:67277339-67277620(+)$1	281	123	142	14.5539
GGUGUACACUGAAAUACAC	chr8:17758678-17758918(-)$1	240	142	161	14.5710
AGCCUGGCCUGUCACAGAA	chr3:37906373-37906710(+)$1	337	249	268	14.4626
augguugagaagaaaauca	chr11:68147696-68147980(+)$1	284	17	36	14.4999
GUUCCCAUAAACAAGGGGA	chr19:56152604-56152893(+)$1	289	193	212	14.6175
uuuccgcaauggucugaga	chr7:105586926-105587206(+)$1	280	20	39	13.9235
AUGUAUUUAGUCAUAUACG	chr8:125703238-125703512(-)$1	274	145	164	14.5539
UUGAGUUGAUGAACACUAC	chr7:95856429-95856708(-)$1	279	137	156	14.0311
ucguugugugccuucgaug	chr16:87941474-87941762(-)$1	288	128	147	14.5539
UUUGUAUAUAAAAUUACAA	chr16:24566162-24566431(+)$1	269	62	81	14.5710
GACUGGCUGCCUCUCCAUC	chr17:53400818-53401046(+)$1	228	205	224	14.5516
CACUGCUUUUUCAUGACGG	chr6:42749819-42750085(+)$1	266	2	21	14.2776
cacauuggcaccuugaugu	chr13:34073281-34073552(-)$1	271	23	42	13.4047
uccaucagcaaaaagauua	chr8:18715607-18715890(-)$1	283	11	30	14.3524
ACUACUGACAAACGGGUGG	chr11:65194810-65195052(+)$1	242	185	204	14.6175
CUUGAUAAUGUAUAAUCUU	chr10:93591858-93592177(+)$1	319	26	45	13.9255
ggggcgggccagggcgccc	chr2:202004752-202005025(+)$1	273	126	145	14.5539
UUGCUUGCCUGCUAAAGUA	chr1:90401472-90401745(+)$1	273	40	59	14.3002
AGUUUGUAAGUAAUUAGAU	chr8:81039685-81040004(-)$1	319	291	310	14.6188
ggcaaaggauccaguuugu	chr1:35990110-35990391(-)$1	281	144	163	14.5539
ACUACUGACAAACGGGUGG	chr11:65194852-65195058(+)$1	206	143	162	14.6175
cuaagccuuuuuaaguaga	chr8:17761481-17761695(-)$1	214	114	133	13.6341
GAGCUGUAGCCCAUCAGAU	chr16:78889366-78889637(+)$1	271	123	142	14.0311
UUUGAGGUGCAAAACUCAA	chr14:39819757-39820011(+)$1	254	178	197	14.5539
GAAUCCUAAUUGUUGGAGA	chr12:11290486-11290756(-)$1	270	25	44	13.7278
AAAUAUUAAAAAACAUAUU	chr9:114980724-114980984(-)$1	260	75	94	14.5539
ggugaggaaauggauucau	chr7:3520273-3520537(+)$1	264	160	179	14.6188
UACAGCUGUUUCUCGCUUG	chr7:1110734-1111023(-)$1	289	111	130	14.3864
UGUCCAUUAUGAUUUGUUC	chr2:201226406-201226662(+)$1	256	184	203	13.1270
CCAUCUUUUCCCACAGGUG	chr19:42375392-42375661(+)$1	269	10	29	14.5539
UAAGGAAGAUGUCAUCCUU	chr17:53372278-53372530(+)$1	252	131	150	13.4821
GCCUGUGUUUCCUGAUUGG	chr20:46205225-46205507(+)$1	282	238	257	13.9561
auuuauuugcauauguaca	chr2:188387608-188387834(+)$1	226	123	142	14.3267
guccgacauuuuucuccau	chr11:65202020-65202230(+)$1	210	161	180	13.3271
GUGUUAGUUUUUUAUGACC	chr1:45601720-45602015(-)$1	295	96	115	12.8085
AAAAGUCAAUAUGUGCUUG	chr6:16393258-16393548(-)$1	290	201	220	13.4872
ggaguuuugucugcgacuc	chr7:32802443-32802718(+)$1	275	107	126	14.6175
uuuaccauuuagaagguag	chr8:17761301-17761525(-)$1	224	136	155	14.5539
UUGUUGAUUUAAAACAAAA	chr10:92987728-92988036(+)$1	308	264	283	14.1811
UUUUAUUGUUAAUUGUAAA	chr17:56080473-56080734(-)$1	261	33	52	14.5539
AUUCAAACCAUUAAUUGAA	chrX:154841555-154841837(-)$1	282	21	40	14.2755
UGUCACCUACCUAAGUUAC	chr3:82089853-82090119(+)$1	266	122	141	13.2018
AGGGAGGUCAGAGGCUCCC	chr21:46919158-46919463(+)$1	305	110	129	14.5539
uaccuggaaaaugacagug	chr5:139900434-139900726(+)$1	292	183	202	12.9241
GUUUUACUGAUUUUUGAGA	chr1:115259315-115259615(-)$1	300	55	74	14.5539
UUUUUGUAUAACUUCAAUA	chr1:46083825-46084098(+)$1	273	60	79	14.5577
GUUGUUGACAUAGGAUUAA	chr6:1909449-1909724(-)$1	275	54	73	14.3206

#DB
.(((((........)))))	chr1:246416220-246416502(-)$1	1	234	253	14.6175
(((.((........)).))	chr8:121646094-121646422(-)$1	1	282	301	13.2018
.(((((........)))))	chr2:71622860-71623116(+)$1	1	219	238	13.4821
((((((........)))))	chr17:56080611-56080871(-)$1	1	170	189	14.5539
(((..(........)..))	chr8:602700-602993(-)$1	1	165	184	13.4857
((((((........)))))	chr7:76188255-76188538(+)$1	1	11	30	14.6188
((.(((........))).)	chr5:122344802-122345107(+)$1	1	149	168	14.5698
((((((........)))))	chr11:65203450-65203695(+)$1	1	147	166	14.6188
((((((........)))).	chr20:18274641-18274899(+)$1	1	97	116	13.4047
((((((........)))))	chr2:130783384-130783671(-)$1	1	119	138	14.6188
((((.(........).)))	chr15:25281540-25281832(+)$1	1	87	106	13.2945
((((((........)))))	chr14:37933871-37934145(+)$1	1	68	87	14.6188
((((((........)))))	chr6:2025201-2025525(-)$1	1	33	52	14.5044
((((((........)))))	chr17:53371902-53372135(+)$1	1	127	146	14.5209
((((((........)))))	chr6:128614045-128614455(-)$1	1	296	315	14.6188
.(((((........)))))	chr2:216213178-216213421(+)$1	1	125	144	14.2863
((..((........))...	chr11:65195662-65195880(+)$1	1	25	44	13.5637
.(((((........)))))	chrX:41209443-41209696(+)$1	1	164	183	14.4999
((((((........)))))	chr16:89465610-89465853(-)$1	1	151	170	14.2755
((((((........)))))	chr8:97569943-97570220(+)$1	1	211	230	14.5539
((((((........)))))	chr12:11308359-11308598(-)$1	1	185	204	14.2755
((((((........)))).	chr20:33641733-33642085(-)$1	1	227	246	13.1483
((((((........)))))	chr13:33078235-33078514(-)$1	1	150	169	14.5539
.(..((........))..)	chr11:65271055-65271271(+)$1	1	156	175	13.4263
((((((........)))).	chr4:78987752-78988066(+)$1	1	254	273	13.4047
((((((........)))))	chr4:166327327-166327587(+)$1	1	146	165	14.2688
.((.((........))...	chr12:11275919-11276203(-)$1	1	231	250	13.4247
((((((........)))))	chr13:20273134-20273422(-)$1	1	2	21	14.6188
((((.(........)..))	chr17:70533010-70533267(-)$1	1	54	73	13.8593
((.(((........))).)	chr11:57585855-57586133(+)$1	1	125	144	14.5698
((((((........)))))	chr18:67277339-67277620(+)$1	1	123	142	14.5539
.(((((........)))))	chr8:17758678-17758918(-)$1	1	142	161	14.5710
((((((........)))..	chr3:37906373-37906710(+)$1	1	249	268	14.4626
.(((((........)))))	chr11:68147696-68147980(+)$1	1	17	36	14.4999
.(((((........)))))	chr19:56152604-56152893(+)$1	1	193	212	14.6175
((((((........)).))	chr7:105586926-105587206(+)$1	1	20	39	13.9235
((((((........)))))	chr8:125703238-125703512(-)$1	1	145	164	14.5539
((((((........))).)	chr7:95856429-95856708(-)$1	1	137	156	14.0311
((((((........)))))	chr16:87941474-87941762(-)$1	1	128	147	14.5539
.(((((........)))))	chr16:24566162-24566431(+)$1	1	62	81	14.5710
((.(((........)))))	chr17:53400818-53401046(+)$1	1	205	224	14.5516
((((((........).)))	chr6:42749819-42750085(+)$1	1	2	21	14.2776
((((((........)))).	chr13:34073281-34073552(-)$1	1	23	42	13.4047
...(((........))).)	chr8:18715607-18715890(-)$1	1	11	30	14.3524
.(((((........)))))	chr11:65194810-65195052(+)$1	1	185	204	14.6175
(..(((........)))..	chr10:93591858-93592177(+)$1	1	26	45	13.9255
((((((........)))))	chr2:202004752-202005025(+)$1	1	126	145	14.5539
)(((((........)))))	chr1:90401472-90401745(+)$1	1	40	59	14.3002
((((((........)))))	chr8:81039685-81040004(-)$1	1	291	310	14.6188
((((((........)))))	chr1:35990110-35990391(-)$1	1	144	163	14.5539
.(((((........)))))	chr11:65194852-65195058(+)$1	1	143	162	14.6175
((..((........))..)	chr8:17761481-17761695(-)$1	1	114	133	13.6341
((((((........))).)	chr16:78889366-78889637(+)$1	1	123	142	14.0311
((((((........)))))	chr14:39819757-39820011(+)$1	1	178	197	14.5539
((.(((........)))..	chr12:11290486-11290756(-)$1	1	25	44	13.7278
((((((........)))))	chr9:114980724-114980984(-)$1	1	75	94	14.5539
((((((........)))))	chr7:3520273-3520537(+)$1	1	160	179	14.6188
((.(((........)))))	chr7:1110734-1111023(-)$1	1	111	130	14.3864
((..((........))..)	chr2:201226406-201226662(+)$1	1	184	203	13.1270
((((((........)))))	chr19:42375392-42375661(+)$1	1	10	29	14.5539
.(((((........)))))	chr17:53372278-53372530(+)$1	1	131	150	13.4821
(((.((........)).))	chr20:46205225-46205507(+)$1	1	238	257	13.9561
...(((........)))..	chr2:188387608-188387834(+)$1	1	123	142	14.3267
((..((........)).))	chr11:65202020-65202230(+)$1	1	161	180	13.3271
(.((((........)))))	chr1:45601720-45602015(-)$1	1	96	115	12.8085
((((((........)))).	chr6:16393258-16393548(-)$1	1	201	220	13.4872
.(((((........)))))	chr7:32802443-32802718(+)$1	1	107	126	14.6175
((((((........)))))	chr8:17761301-17761525(-)$1	1	136	155	14.5539
((.(((........)))..	chr10:92987728-92988036(+)$1	1	264	283	14.1811
((((((........)))))	chr17:56080473-56080734(-)$1	1	33	52	14.5539
((((((........)))))	chrX:154841555-154841837(-)$1	1	21	40	14.2755
(((.((........)).))	chr3:82089853-82090119(+)$1	1	122	141	13.2018
((((((........)))))	chr21:46919158-46919463(+)$1	1	110	129	14.5539
.(((((........))).)	chr5:139900434-139900726(+)$1	1	183	202	12.9241
((((((........)))))	chr1:115259315-115259615(-)$1	1	55	74	14.5539
((((((........))).)	chr1:46083825-46084098(+)$1	1	60	79	14.5577
((((.(........).)))	chr6:1909449-1909724(-)$1	1	54	73	14.3206

#PSSM
f : 0.25	c : 0.11	g : 0.11	d : 0.10	[ : 0.09	" : 0.05	b : 0.05	e : 0.05	i : 0.03	: : 0.02	h : 0.02	! : 0.02	$ : 0.01	= : 0.01	% : 0.01	
e : 0.25	f : 0.24	g : 0.11	d : 0.10	c : 0.10	i : 0.03	b : 0.03	" : 0.02	h : 0.01	a : 0.01	= : 0.01	! : 0.01	[ : 0.01	
e : 0.23	f : 0.23	d : 0.14	g : 0.10	[ : 0.07	! : 0.07	i : 0.03	c : 0.02	b : 0.02	" : 0.02	= : 0.01	
e : 0.22	f : 0.22	c : 0.18	g : 0.10	d : 0.09	! : 0.07	[ : 0.05	i : 0.03	= : 0.01	
e : 0.22	f : 0.19	c : 0.18	b : 0.12	g : 0.10	d : 0.07	[ : 0.03	i : 0.03	! : 0.01	
e : 0.20	f : 0.19	c : 0.18	b : 0.12	g : 0.10	d : 0.07	a : 0.06	i : 0.03	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
e : 0.20	f : 0.19	c : 0.18	b : 0.12	g : 0.10	d : 0.07	a : 0.06	i : 0.03	
e : 0.20	f : 0.19	c : 0.18	b : 0.12	g : 0.10	d : 0.07	] : 0.03	i : 0.03	2 : 0.02	
e : 0.22	f : 0.20	c : 0.18	g : 0.10	d : 0.09	] : 0.06	2 : 0.06	i : 0.03	3 : 0.02	
e : 0.23	f : 0.23	d : 0.12	g : 0.10	] : 0.09	2 : 0.07	3 : 0.05	i : 0.03	c : 0.02	= : 0.01	
e : 0.24	f : 0.24	g : 0.10	d : 0.09	3 : 0.06	c : 0.05	] : 0.05	i : 0.03	2 : 0.03	= : 0.02	b : 0.02	a : 0.01	

#score	1090.4420168604365
#seq	77
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_transcript_m2_run1.txt

#BEAR
eeeeeooooooeeee	chr1:16257692-16257923(+)$1	231	214	229	11.7779
eeeeeooooooeeee	chrM:12072-12307(+)$1	235	169	184	11.7779
eeeeeooooooeeee	chr19:2228383-2228689(+)$1	306	128	143	11.7779
!ddddoooooodddd	chr7:155465463-155465710(+)$1	247	55	70	12.0450
c[cccooooooccc3	chr7:104782541-104782868(-)$1	327	34	49	10.1653
!ddddoooooodddd	chr11:65820043-65820279(+)$1	236	45	60	12.0450
eeeeeooooooeeee	chr19:943514-943778(+)$1	264	217	232	11.7779
!!cccoooooocccf	chr12:113598998-113599270(-)$1	272	80	95	10.3810
dd[bboooooobbdd	chr22:20101500-20101750(-)$1	250	175	190	9.4067
gggggoooooogggg	chr9:100777549-100777782(+)$1	233	81	96	10.0308
eeeeeooooooeeee	chr17:43158907-43159162(+)$1	255	27	42	11.7779
d[cccooooooccc]	chr16:85663332-85663582(+)$1	250	89	104	10.1914
:ddddoooooodddd	chr3:37367443-37367694(+)$1	251	200	215	11.1104
:ddddoooooodddd	chr19:14523853-14524110(-)$1	257	148	163	11.1104
bddddoooooodddd	chr7:1055257-1055530(-)$1	273	111	126	11.6055
c[cccooooooccc]	chr11:568072-568367(-)$1	295	117	132	10.2101
:ddddoooooodddd	chr19:6223605-6223898(-)$1	293	198	213	11.1104
eeeeeooooooeeee	chr1:245026993-245027240(-)$1	247	41	56	11.7779
eeeeeooooooeeee	chr12:95876888-95877157(+)$1	269	163	178	11.7779
:ddddoooooodddd	chr15:75651951-75652196(-)$1	245	67	82	11.1104
eeeeeooooooeeee	chr1:1425356-1425593(+)$1	237	65	80	11.7779
eeeeeooooooeeee	chr2:131976128-131976483(+)$1	355	291	306	11.7779
:ddddoooooodddd	chr16:88838744-88838992(-)$1	248	218	233	11.1104
eeeeeooooooeeee	chr16:85664393-85664653(+)$1	260	122	137	11.7779
!ddddoooooodddd	chr9:123298557-123298799(-)$1	242	8	23	12.0450
dd!!aooooooa22d	chr4:83277605-83277889(-)$1	284	205	220	9.6581
!!cccooooooccc4	chr8:38854436-38854722(+)$1	286	130	145	10.4666
eeeeeooooooeeee	chr8:145650507-145650760(-)$1	253	6	21	11.7779
eecccooooooccc]	chr22:20918845-20919075(+)$1	230	191	206	10.5744
eeeeeooooooeeee	chr19:50156299-50156566(+)$1	267	192	207	11.7779
gggggoooooogggg	chr1:2164978-2165237(+)$1	259	157	172	10.0308
eddddoooooodddd	chr11:65819843-65820086(+)$1	243	180	195	11.9894
"ddddoooooodddd	chr14:73577688-73577954(+)$1	266	219	234	11.9309
gggggoooooogggg	chr11:129992098-129992328(+)$1	230	134	149	10.0308
eeeeeooooooeeee	chr16:591279-591515(+)$1	236	179	194	11.7779
[ddddoooooodddd	chr2:132021392-132021670(+)$1	278	89	104	12.0128
cddddoooooodddd	chr17:80054868-80055124(-)$1	256	227	242	11.8284
:ddddoooooodddd	chrM:6291-6508(+)$1	217	19	34	11.1104
gggggoooooogggg	chr16:89967386-89967705(+)$1	319	100	115	10.0308
dddddoooooodddd	chr22:50022263-50022510(-)$1	247	30	45	11.8097
""cccooooooccc6	chr11:820084-820337(+)$1	253	125	140	9.6429
[ddddoooooodddd	chr17:48823150-48823461(+)$1	311	172	187	12.0128
[ddddoooooodddd	chr1:2164874-2165099(+)$1	225	19	34	12.0128
[ddddoooooodddd	chr5:134260992-134261235(+)$1	243	211	226	12.0128
Cddddoooooodddd	chr16:88799295-88799579(-)$1	284	144	159	10.8860
:ddddoooooodddd	chr14:56106999-56107254(+)$1	255	79	94	11.1104
[ddddoooooodddd	chr17:80808006-80808291(+)$1	285	123	138	12.0128
ddddaooooooa]dd	chr20:61542679-61542978(-)$1	299	266	281	10.9568
eeeeeooooooeeee	chr9:139836319-139836557(-)$1	238	58	73	11.7779
eeeeeooooooeeee	chr22:26165226-26165487(+)$1	261	42	57	11.7779
eeeeeooooooeeee	chr1:234744761-234744995(-)$1	234	126	141	11.7779
eeeeeooooooeeee	chr1:2169116-2169356(+)$1	240	2	17	11.7779
eeeeeooooooeeee	chr1:150192897-150193147(-)$1	250	83	98	11.7779
!!cccoooooocccb	chr11:71724184-71724435(-)$1	251	201	216	10.1586
eeeeeooooooeeee	chr12:62926133-62926438(+)$1	305	102	117	11.7779
iiiiiooooooiiii	chr7:1059956-1060248(-)$1	292	6	21	9.9379
[ddddoooooodddd	chr17:46052074-46052312(+)$1	238	120	135	12.0128
eeeeeooooooeeee	chr17:17720411-17720633(-)$1	222	151	166	11.7779
[ddddoooooodddd	chr11:67046794-67047053(+)$1	259	75	90	12.0128
eeeeeooooooeeee	chr12:133373026-133373304(-)$1	278	176	191	11.7779

#otherMatches

#Seq PSSM
AGGUGACCAGCCGCC	chr1:16257692-16257923(+)$1	231	214	229	11.7779
CAUGUCUAACAACAU	chrM:12072-12307(+)$1	235	169	184	11.7779
GACCAGGGAGAUGGU	chr19:2228383-2228689(+)$1	306	128	143	11.7779
UAUGGGAAUAAUCAU	chr7:155465463-155465710(+)$1	247	55	70	12.0450
GAUAGAAUCACCUAA	chr7:104782541-104782868(-)$1	327	34	49	10.1653
GGGCCUGACCUGGCC	chr11:65820043-65820279(+)$1	236	45	60	12.0450
UGACACGCUGAUGUC	chr19:943514-943778(+)$1	264	217	232	11.7779
CAGCUAUCAGAAGUG	chr12:113598998-113599270(-)$1	272	80	95	10.3810
CCUCAACCAAGUGGG	chr22:20101500-20101750(-)$1	250	175	190	9.4067
UUUGUUACUGUACag	chr9:100777549-100777782(+)$1	233	81	96	10.0308
ACAGAAAGCUCUUUG	chr17:43158907-43159162(+)$1	255	27	42	11.7779
UGAGGGGGCGGCCUG	chr16:85663332-85663582(+)$1	250	89	104	10.1914
ACUCUGAGUAAAGAG	chr3:37367443-37367694(+)$1	251	200	215	11.1104
AGAGCACACCAGCUC	chr19:14523853-14524110(-)$1	257	148	163	11.1104
GGUGUUGGGAUGCGC	chr7:1055257-1055530(-)$1	273	111	126	11.6055
CGGACGCCCAAGUUG	chr11:568072-568367(-)$1	295	117	132	10.2101
GCAGCGCCCAGGCUG	chr19:6223605-6223898(-)$1	293	198	213	11.1104
UUUCCAGGAAGGGGA	chr1:245026993-245027240(-)$1	247	41	56	11.7779
AGGACGUUAGUGUCU	chr12:95876888-95877157(+)$1	269	163	178	11.7779
AGUCUUUCCUCAGAC	chr15:75651951-75652196(-)$1	245	67	82	11.1104
GCCCGAGAAGCCGGG	chr1:1425356-1425593(+)$1	237	65	80	11.7779
UGGGGUAAAGUCCCC	chr2:131976128-131976483(+)$1	355	291	306	11.7779
UGGAAAGUAUAUUCC	chr16:88838744-88838992(-)$1	248	218	233	11.1104
ACAGUUCAGCUGCUG	chr16:85664393-85664653(+)$1	260	122	137	11.7779
CCCAGGCAGAACUGG	chr9:123298557-123298799(-)$1	242	8	23	12.0450
UACUAUACUUUUUAU	chr4:83277605-83277889(-)$1	284	205	220	9.6581
UGCGGAAUCGGCCGA	chr8:38854436-38854722(+)$1	286	130	145	10.4666
GUGACAAGACCGUCA	chr8:145650507-145650760(-)$1	253	6	21	11.7779
UCAGCCACAAUGCUG	chr22:20918845-20919075(+)$1	230	191	206	10.5744
GCUGCAGCCAGGCGG	chr19:50156299-50156566(+)$1	267	192	207	11.7779
GAGACCUUUGAGUCU	chr1:2164978-2165237(+)$1	259	157	172	10.0308
CCUGCGGAGAAGCGG	chr11:65819843-65820086(+)$1	243	180	195	11.9894
CUGCAAAUACCUGUA	chr14:73577688-73577954(+)$1	266	219	234	11.9309
CACAGAAGCAGCUGU	chr11:129992098-129992328(+)$1	230	134	149	10.0308
GGGCCGUGUGGGGCC	chr16:591279-591515(+)$1	236	179	194	11.7779
GAUGACCCAGAUCAU	chr2:132021392-132021670(+)$1	278	89	104	12.0128
CACCCCAACACGGGU	chr17:80054868-80055124(-)$1	256	227	242	11.8284
ACUCCCACCCUGGAG	chrM:6291-6508(+)$1	217	19	34	11.1104
AUUGGAUUGUACCAG	chr16:89967386-89967705(+)$1	319	100	115	10.0308
UAAGUCUCAGCGCUU	chr22:50022263-50022510(-)$1	247	30	45	11.8097
AAUCCGAGGAGGGAC	chr11:820084-820337(+)$1	253	125	140	9.6429
GGACCACAAAAGGUC	chr17:48823150-48823461(+)$1	311	172	187	12.0128
GCCUGAAUUCCCAGG	chr1:2164874-2165099(+)$1	225	19	34	12.0128
UGACUAUUAUAAGUC	chr5:134260992-134261235(+)$1	243	211	226	12.0128
GAGGGCCCCACCCCU	chr16:88799295-88799579(-)$1	284	144	159	10.8860
UUCCUUGUUCUAGGA	chr14:56106999-56107254(+)$1	255	79	94	11.1104
uuggcuguguuguug	chr17:80808006-80808291(+)$1	285	123	138	12.0128
GGCAGGAGGAGCAUG	chr20:61542679-61542978(-)$1	299	266	281	10.9568
CGGUACACCCCUGCC	chr9:139836319-139836557(-)$1	238	58	73	11.7779
GCUGGAAGGACCCAG	chr22:26165226-26165487(+)$1	261	42	57	11.7779
GAGGCCCCCGCGCCU	chr1:234744761-234744995(-)$1	234	126	141	11.7779
GCAGAUGUAUCUUUG	chr1:2169116-2169356(+)$1	240	2	17	11.7779
GAAGAAGGAGGUCUU	chr1:150192897-150193147(-)$1	250	83	98	11.7779
AUGCUGAAGAAGGCG	chr11:71724184-71724435(-)$1	251	201	216	10.1586
AGUUGAGCCUCCAAC	chr12:62926133-62926438(+)$1	305	102	117	11.7779
UCUUAGCUGUGUGAG	chr7:1059956-1060248(-)$1	292	6	21	9.9379
UACAGGACUAACUGU	chr17:46052074-46052312(+)$1	238	120	135	12.0128
AGCUGUGUCCCCAGC	chr17:17720411-17720633(-)$1	222	151	166	11.7779
CAGGAAUCCUGUCCU	chr11:67046794-67047053(+)$1	259	75	90	12.0128
GCAGGUAAGUCCCUG	chr12:133373026-133373304(-)$1	278	176	191	11.7779

#DB
(((((......))))	chr1:16257692-16257923(+)$1	1	214	229	11.7779
(((((......))))	chrM:12072-12307(+)$1	1	169	184	11.7779
(((((......))))	chr19:2228383-2228689(+)$1	1	128	143	11.7779
.((((......))))	chr7:155465463-155465710(+)$1	1	55	70	12.0450
(.(((......))).	chr7:104782541-104782868(-)$1	1	34	49	10.1653
.((((......))))	chr11:65820043-65820279(+)$1	1	45	60	12.0450
(((((......))))	chr19:943514-943778(+)$1	1	217	232	11.7779
..(((......))))	chr12:113598998-113599270(-)$1	1	80	95	10.3810
((.((......))))	chr22:20101500-20101750(-)$1	1	175	190	9.4067
(((((......))))	chr9:100777549-100777782(+)$1	1	81	96	10.0308
(((((......))))	chr17:43158907-43159162(+)$1	1	27	42	11.7779
(.(((......))).	chr16:85663332-85663582(+)$1	1	89	104	10.1914
.((((......))))	chr3:37367443-37367694(+)$1	1	200	215	11.1104
.((((......))))	chr19:14523853-14524110(-)$1	1	148	163	11.1104
(((((......))))	chr7:1055257-1055530(-)$1	1	111	126	11.6055
(.(((......))).	chr11:568072-568367(-)$1	1	117	132	10.2101
.((((......))))	chr19:6223605-6223898(-)$1	1	198	213	11.1104
(((((......))))	chr1:245026993-245027240(-)$1	1	41	56	11.7779
(((((......))))	chr12:95876888-95877157(+)$1	1	163	178	11.7779
.((((......))))	chr15:75651951-75652196(-)$1	1	67	82	11.1104
(((((......))))	chr1:1425356-1425593(+)$1	1	65	80	11.7779
(((((......))))	chr2:131976128-131976483(+)$1	1	291	306	11.7779
.((((......))))	chr16:88838744-88838992(-)$1	1	218	233	11.1104
(((((......))))	chr16:85664393-85664653(+)$1	1	122	137	11.7779
.((((......))))	chr9:123298557-123298799(-)$1	1	8	23	12.0450
((..(......)..)	chr4:83277605-83277889(-)$1	1	205	220	9.6581
..(((......))).	chr8:38854436-38854722(+)$1	1	130	145	10.4666
(((((......))))	chr8:145650507-145650760(-)$1	1	6	21	11.7779
(((((......))).	chr22:20918845-20919075(+)$1	1	191	206	10.5744
(((((......))))	chr19:50156299-50156566(+)$1	1	192	207	11.7779
(((((......))))	chr1:2164978-2165237(+)$1	1	157	172	10.0308
(((((......))))	chr11:65819843-65820086(+)$1	1	180	195	11.9894
.((((......))))	chr14:73577688-73577954(+)$1	1	219	234	11.9309
(((((......))))	chr11:129992098-129992328(+)$1	1	134	149	10.0308
(((((......))))	chr16:591279-591515(+)$1	1	179	194	11.7779
.((((......))))	chr2:132021392-132021670(+)$1	1	89	104	12.0128
)((((......))))	chr17:80054868-80055124(-)$1	1	227	242	11.8284
.((((......))))	chrM:6291-6508(+)$1	1	19	34	11.1104
(((((......))))	chr16:89967386-89967705(+)$1	1	100	115	10.0308
)((((......))))	chr22:50022263-50022510(-)$1	1	30	45	11.8097
..(((......))).	chr11:820084-820337(+)$1	1	125	140	9.6429
.((((......))))	chr17:48823150-48823461(+)$1	1	172	187	12.0128
.((((......))))	chr1:2164874-2165099(+)$1	1	19	34	12.0128
.((((......))))	chr5:134260992-134261235(+)$1	1	211	226	12.0128
(((((......))))	chr16:88799295-88799579(-)$1	1	144	159	10.8860
.((((......))))	chr14:56106999-56107254(+)$1	1	79	94	11.1104
.((((......))))	chr17:80808006-80808291(+)$1	1	123	138	12.0128
(((((......).))	chr20:61542679-61542978(-)$1	1	266	281	10.9568
(((((......))))	chr9:139836319-139836557(-)$1	1	58	73	11.7779
(((((......))))	chr22:26165226-26165487(+)$1	1	42	57	11.7779
(((((......))))	chr1:234744761-234744995(-)$1	1	126	141	11.7779
(((((......))))	chr1:2169116-2169356(+)$1	1	2	17	11.7779
(((((......))))	chr1:150192897-150193147(-)$1	1	83	98	11.7779
..(((......))))	chr11:71724184-71724435(-)$1	1	201	216	10.1586
(((((......))))	chr12:62926133-62926438(+)$1	1	102	117	11.7779
(((((......))))	chr7:1059956-1060248(-)$1	1	6	21	9.9379
.((((......))))	chr17:46052074-46052312(+)$1	1	120	135	12.0128
(((((......))))	chr17:17720411-17720633(-)$1	1	151	166	11.7779
.((((......))))	chr11:67046794-67047053(+)$1	1	75	90	12.0128
(((((......))))	chr12:133373026-133373304(-)$1	1	176	191	11.7779

#PSSM
e : 0.38	: : 0.11	[ : 0.11	! : 0.09	d : 0.08	g : 0.06	c : 0.05	" : 0.03	b : 0.01	C : 0.01	i : 0.01	
d : 0.43	e : 0.36	g : 0.06	[ : 0.05	! : 0.05	" : 0.01	i : 0.01	
d : 0.39	e : 0.35	c : 0.13	g : 0.06	[ : 0.01	! : 0.01	i : 0.01	
d : 0.39	e : 0.35	c : 0.13	g : 0.06	b : 0.01	! : 0.01	i : 0.01	
d : 0.38	e : 0.35	c : 0.13	g : 0.06	a : 0.03	b : 0.01	i : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.38	e : 0.35	c : 0.13	g : 0.06	a : 0.03	b : 0.01	i : 0.01	
d : 0.38	e : 0.35	c : 0.13	g : 0.06	b : 0.01	2 : 0.01	] : 0.01	i : 0.01	
d : 0.41	e : 0.35	c : 0.13	g : 0.06	2 : 0.01	i : 0.01	
d : 0.43	e : 0.35	g : 0.06	] : 0.05	3 : 0.01	f : 0.01	4 : 0.01	6 : 0.01	b : 0.01	i : 0.01	

#score	677.2591285589838
#seq	60
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_UTR_m3_run1.txt

#BEAR
=======uuuuuuuuuuuu========	chr5:74161197-74161501(-)$1	304	269	296	21.6469
bb!!eeeeesssssssssseeeee22b	chr16:2581146-2581444(+)$1	298	223	250	15.3300
+++dddduuuuuuuuuuuudddd22a]	chr8:134308972-134309242(-)$1	270	158	185	19.0468
cc"""bbtttttttttttbb22ccc]d	chr8:71314210-71314465(-)$1	255	81	108	19.4739
=======ttttttttttt=========	chr12:125398641-125398963(-)$1	322	285	312	21.1308
gggg[cccsssssssssscccgggggg	chr10:74035261-74035511(+)$1	250	161	188	15.8486
:eeeeevvvvvvvvvvvvveeeee:ee	chr15:72521844-72522138(-)$1	294	220	247	18.3545
[ddddxxxxxxxxxxxxxxxdddd22f	chr20:60710053-60710329(+)$1	276	56	83	15.7460
bffffffrrrrrrrrrffffff4444b	chr20:24943988-24944271(-)$1	283	40	67	10.9006
cc[dddduuuuuuuuuuuudddd]ccc	chr17:74731214-74731466(-)$1	252	84	111	20.6622
[ddddbbtttttttttttbb]dddd]c	chr22:41755305-41755580(+)$1	275	241	268	20.2511
[fffffftttttttttttffffff22e	chr1:11084610-11084885(+)$1	275	213	240	19.9127
iiiiiiiirrrrrrrrriiiiiiiiiC	chr8:144674985-144675247(-)$1	262	219	246	10.5761
!dddd[bbssssssssssbbdddd22c	chr21:34942094-34942381(+)$1	287	128	155	16.3296
!!eeeeesssssssssseeeee]cccf	chr16:28876805-28877047(+)$1	242	171	198	15.6541
Eeeeeevvvvvvvvvvvvveeeee:::	chr1:1327646-1327926(-)$1	280	206	233	16.9880
ggggggwwwwwwwwwwwwwwggggggg	chr6:117996584-117996877(+)$1	293	65	92	19.9344

#otherMatches

#Seq PSSM
CGGGUGGAUUCGAAGAUAACCACCUGA	chr5:74161197-74161501(-)$1	304	269	296	21.6469
UGCuuuuuaaaaauugugguaaaauac	chr16:2581146-2581444(+)$1	298	223	250	15.3300
ACGGUCCGAAAAAAUACCAGGAUAGCG	chr8:134308972-134309242(-)$1	270	158	185	19.0468
GCGGACCGGAGGAAGGAAGGGGGCGGG	chr8:71314210-71314465(-)$1	255	81	108	19.4739
GUUCUGUUGGCUUAUAAUGCAGGGUGG	chr12:125398641-125398963(-)$1	322	285	312	21.1308
UUUGUAUCUUGUUUUUCUGAUCGGAGC	chr10:74035261-74035511(+)$1	250	161	188	15.8486
CAGUCUGAAGAUCAUUUAAAGACUCAG	chr15:72521844-72522138(-)$1	294	220	247	18.3545
UACAUCGUUGUUUUGUGUUUGUGUUGU	chr20:60710053-60710329(+)$1	276	56	83	15.7460
CCAUGAGGAACAUAAAUUCAUGUAAAG	chr20:24943988-24944271(-)$1	283	40	67	10.9006
UUGGGCCUUUUAAAAACAUGGCUGGGU	chr17:74731214-74731466(-)$1	252	84	111	20.6622
CCCCAUCGAGUGCGGAGAGAGUGGGAG	chr22:41755305-41755580(+)$1	275	241	268	20.2511
CAUUGUUAAGUAUGUAAAAGCAAUAAC	chr1:11084610-11084885(+)$1	275	213	240	19.9127
CUGCCACCUGGGAUUGUGGUGGCGGCG	chr8:144674985-144675247(-)$1	262	219	246	10.5761
CGUGCUACGAAGAUGUAGGUGCAUCUG	chr21:34942094-34942381(+)$1	287	128	155	16.3296
GCUCAUGGGAAGUGUGACAUGAAUAUU	chr16:28876805-28877047(+)$1	242	171	198	15.6541
GGAUACUUUGAAAAAUAUUGUAUCACU	chr1:1327646-1327926(-)$1	280	206	233	16.9880
CUGCCAAGGGAGGAGGAAGAUGGCGGC	chr6:117996584-117996877(+)$1	293	65	92	19.9344

#DB
(((((((............))))))))	chr5:74161197-74161501(-)$1	1	269	296	21.6469
((..(((((..........)))))..)	chr16:2581146-2581444(+)$1	1	223	250	15.3300
...((((............))))..).	chr8:134308972-134309242(-)$1	1	158	185	19.0468
((...((...........))..))).)	chr8:71314210-71314465(-)$1	1	81	108	19.4739
(((((((...........)))))))))	chr12:125398641-125398963(-)$1	1	285	312	21.1308
((((.(((..........)))))))))	chr10:74035261-74035511(+)$1	1	161	188	15.8486
.(((((.............))))).((	chr15:72521844-72522138(-)$1	1	220	247	18.3545
.((((...............))))..)	chr20:60710053-60710329(+)$1	1	56	83	15.7460
(((((((.........))))))....)	chr20:24943988-24944271(-)$1	1	40	67	10.9006
((.((((............)))).)))	chr17:74731214-74731466(-)$1	1	84	111	20.6622
.((((((...........)).)))).)	chr22:41755305-41755580(+)$1	1	241	268	20.2511
.((((((...........))))))..)	chr1:11084610-11084885(+)$1	1	213	240	19.9127
((((((((.........))))))))))	chr8:144674985-144675247(-)$1	1	219	246	10.5761
.((((.((..........))))))..)	chr21:34942094-34942381(+)$1	1	128	155	16.3296
..(((((..........))))).))))	chr16:28876805-28877047(+)$1	1	171	198	15.6541
)(((((.............)))))...	chr1:1327646-1327926(-)$1	1	206	233	16.9880
((((((..............)))))))	chr6:117996584-117996877(+)$1	1	65	92	19.9344

#PSSM
[ : 0.17	= : 0.11	b : 0.11	c : 0.11	g : 0.11	! : 0.11	+ : 0.05	: : 0.05	i : 0.05	E : 0.05	
d : 0.17	= : 0.11	c : 0.11	g : 0.11	e : 0.11	f : 0.11	b : 0.05	+ : 0.05	i : 0.05	! : 0.05	
e : 0.17	d : 0.17	= : 0.11	g : 0.11	f : 0.11	! : 0.05	+ : 0.05	" : 0.05	[ : 0.05	i : 0.05	
d : 0.29	e : 0.17	= : 0.11	g : 0.11	f : 0.11	! : 0.05	" : 0.05	i : 0.05	
d : 0.29	e : 0.23	= : 0.11	f : 0.11	" : 0.05	[ : 0.05	i : 0.05	g : 0.05	
e : 0.23	= : 0.11	d : 0.11	b : 0.11	f : 0.11	c : 0.05	x : 0.05	i : 0.05	[ : 0.05	g : 0.05	
b : 0.17	= : 0.11	e : 0.11	d : 0.11	v : 0.11	f : 0.11	c : 0.05	x : 0.05	i : 0.05	w : 0.05	
t : 0.23	u : 0.17	v : 0.11	e : 0.05	c : 0.05	x : 0.05	r : 0.05	i : 0.05	b : 0.05	s : 0.05	w : 0.05	
t : 0.23	u : 0.17	s : 0.17	v : 0.11	r : 0.11	e : 0.05	x : 0.05	w : 0.05	
s : 0.23	t : 0.23	u : 0.17	v : 0.11	r : 0.11	x : 0.05	w : 0.05	
s : 0.23	t : 0.23	u : 0.17	v : 0.11	r : 0.11	x : 0.05	w : 0.05	
s : 0.23	t : 0.23	u : 0.17	v : 0.11	r : 0.11	x : 0.05	w : 0.05	
s : 0.23	t : 0.23	u : 0.17	v : 0.11	r : 0.11	x : 0.05	w : 0.05	
s : 0.23	t : 0.23	u : 0.17	v : 0.11	r : 0.11	x : 0.05	w : 0.05	
s : 0.23	t : 0.23	u : 0.17	v : 0.11	r : 0.11	x : 0.05	w : 0.05	
s : 0.23	t : 0.23	u : 0.17	v : 0.11	r : 0.11	x : 0.05	w : 0.05	
s : 0.23	t : 0.23	u : 0.17	v : 0.11	x : 0.05	f : 0.05	r : 0.05	w : 0.05	
t : 0.23	u : 0.17	s : 0.17	v : 0.11	x : 0.05	f : 0.05	i : 0.05	e : 0.05	w : 0.05	
u : 0.17	b : 0.17	v : 0.11	f : 0.11	s : 0.05	= : 0.05	c : 0.05	x : 0.05	i : 0.05	e : 0.05	w : 0.05	
e : 0.23	b : 0.17	= : 0.11	d : 0.11	f : 0.11	c : 0.05	x : 0.05	i : 0.05	w : 0.05	
e : 0.23	d : 0.23	= : 0.11	f : 0.11	2 : 0.05	c : 0.05	] : 0.05	i : 0.05	g : 0.05	
d : 0.29	e : 0.23	= : 0.11	g : 0.11	f : 0.11	2 : 0.05	i : 0.05	
d : 0.29	e : 0.17	= : 0.11	g : 0.11	c : 0.05	4 : 0.05	f : 0.05	i : 0.05	] : 0.05	
e : 0.17	d : 0.17	= : 0.11	c : 0.11	g : 0.11	2 : 0.05	4 : 0.05	] : 0.05	f : 0.05	i : 0.05	
2 : 0.29	c : 0.17	= : 0.11	g : 0.11	: : 0.11	4 : 0.05	d : 0.05	i : 0.05	
2 : 0.23	= : 0.11	] : 0.11	g : 0.11	c : 0.11	a : 0.05	e : 0.05	4 : 0.05	i : 0.05	: : 0.05	
c : 0.17	= : 0.11	b : 0.11	g : 0.11	e : 0.11	f : 0.11	] : 0.05	d : 0.05	C : 0.05	: : 0.05	

#score	297.78702692501196
#seq	17
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_transcript_m1_run1.txt

#BEAR
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr16:11559504-11559851(-)$1	347	61	101	62.5220
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr10:72182661-72182906(+)$1	245	75	115	62.6254
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^=	chr17:55539142-55539403(+)$1	261	74	114	62.6106
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:86534167-86534431(-)$1	264	59	99	62.6150
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^=	chr7:107049976-107050231(-)$1	255	143	183	62.6106
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr4:25242378-25242687(+)$1	309	224	264	62.5220
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^g	chr6:20999404-20999673(+)$1	269	107	147	62.5627
+dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr17:6901425-6901682(-)$1	257	96	136	56.3797
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^h	chr1:197094441-197094738(-)$1	297	106	146	62.3390
d^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr1:52004559-52004839(+)$1	280	55	95	61.3046
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:73047252-73047485(-)$1	233	77	117	62.6150
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr12:120150437-120150690(-)$1	253	143	183	62.6254
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^g	chr11:86853732-86854014(+)$1	282	143	183	62.5627
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^g	chr5:139848571-139848838(+)$1	267	133	173	62.5627
a^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^a]e	chr19:3369254-3369532(+)$1	278	151	191	59.7417
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^g	chr2:17866084-17866452(-)$1	368	322	362	62.5627
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr13:33208015-33208328(+)$1	313	94	134	62.6150
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^e	chr15:82081013-82081315(-)$1	302	63	103	56.2944
iii^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^i	chr2:69643021-69643326(-)$1	305	190	230	58.6845
c^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr11:241664-241944(+)$1	280	35	75	61.5735
eeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^e	chr19:46883665-46883936(+)$1	271	70	110	57.7062
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr22:49838978-49839261(-)$1	283	101	141	62.6150
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:109209737-109209973(+)$1	236	83	123	62.6150
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^g	chr21:38240430-38240669(-)$1	239	115	155	62.5627
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr8:91305447-91305716(+)$1	269	111	151	53.3939
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr5:64092586-64092964(+)$1	378	143	183	62.5220
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr5:102508077-102508373(+)$1	296	89	129	62.6254
ccc:ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^cc	chr10:103587110-103587367(-)$1	257	153	193	52.0634
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chrX:69683981-69684276(+)$1	295	128	168	62.6254
fff[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]f	chr20:56976359-56976614(+)$1	255	26	66	50.1570
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr22:25908276-25908602(+)$1	326	16	56	62.6150
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr7:128689058-128689317(-)$1	259	107	147	50.4523
!bb!!bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^b	chr3:47131141-47131456(-)$1	315	76	116	53.9372
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^h	chrX:76849384-76849637(-)$1	253	197	237	62.3390
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^g	chr1:111664813-111665122(-)$1	309	88	128	62.5627
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^g	chr17:78523907-78524214(+)$1	307	117	157	62.5627
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr14:58960826-58961081(+)$1	255	54	94	57.3394
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:185383630-185383906(-)$1	276	56	96	62.6150
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^i	chr7:129099530-129099743(+)$1	213	149	189	62.5644
!!bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb22d	chr1:207859465-207859709(+)$1	244	81	121	52.7265
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]bb333c	chr1:40331466-40331707(-)$1	241	173	213	50.9040
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd444	chr2:39713938-39714222(+)$1	284	12	52	54.9996
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr7:102021170-102021430(+)$1	260	45	85	59.3122
a!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^e	chr19:18280144-18280500(+)$1	356	84	124	52.6566
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr15:27440352-27440572(+)$1	220	98	138	62.6254
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr2:99197909-99198154(+)$1	245	85	125	62.5220
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr2:218705644-218705907(-)$1	263	95	135	62.6254
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr19:18458149-18458426(+)$1	277	125	165	62.6254
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^=	chr10:30593466-30593735(-)$1	269	124	164	62.6106
eeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^e	chr3:136586027-136586271(+)$1	244	66	106	57.7062
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:50060591-50060841(+)$1	250	26	66	62.6150
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^g	chr17:30808482-30808709(+)$1	227	127	167	62.5627
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr16:23858587-23858854(+)$1	267	194	234	62.5220
e^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^e	chr6:12081962-12082200(+)$1	238	83	123	61.4068
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^f	chr3:24202792-24203104(-)$1	312	156	196	62.4405
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee444	chr7:12416995-12417210(-)$1	215	43	83	53.7320
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:152048827-152049041(+)$1	214	89	129	62.6150
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:88630640-88630966(+)$1	326	107	147	62.6150
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee444	chr7:12416977-12417195(-)$1	218	28	68	53.7320

#otherMatches

#Seq PSSM
uuuucucuuuucuuuuuucuuccuuucuuccuuuucuuuc	chr16:11559504-11559851(-)$1	347	61	101	62.5220
uucuuccucucuccuuccuuuccuuccuUUUUCUCUACCA	chr10:72182661-72182906(+)$1	245	75	115	62.6254
GCAUAAACUUUCUUCUCUUACUCUUCCUUUUCCAUUACCC	chr17:55539142-55539403(+)$1	261	74	114	62.6106
ucucauucauucauucauucauccauucauucauucauuc	chr7:86534167-86534431(-)$1	264	59	99	62.6150
UAUUAGCAGCAAACAAAGAUACUAAAAUUUCUCUCACUUG	chr7:107049976-107050231(-)$1	255	143	183	62.6106
acuuaugcugcuguucuccccucuucuuccccuuuuugau	chr4:25242378-25242687(+)$1	309	224	264	62.5220
ucuccuuccuuUCCUCCCUCUCUUUCAAAUCGAUGACCUG	chr6:20999404-20999673(+)$1	269	107	147	62.5627
UGCCACCAUUUCUUGCUCCUUCACUCAUCUUCCCCUACCU	chr17:6901425-6901682(-)$1	257	96	136	56.3797
ucuccucucuuuucuguccuuuccuuucuuucucuuuucu	chr1:197094441-197094738(-)$1	297	106	146	62.3390
cucacucucuuugucuauuccaccacccuaaaauccucug	chr1:52004559-52004839(+)$1	280	55	95	61.3046
UGUUUCUACUUUUUAUCUCACAUUUCUCAUUUCUGCAUUU	chrX:73047252-73047485(-)$1	233	77	117	62.6150
guuccuguucuuuuguuuuucuuucugcccuuccucuuuG	chr12:120150437-120150690(-)$1	253	143	183	62.6254
cuuucuucuucuUUUCUUCCUCUUuuuuucuucaacauuc	chr11:86853732-86854014(+)$1	282	143	183	62.5627
uucucucccacccuccuuccuucuucuuccuuUUUUAAAC	chr5:139848571-139848838(+)$1	267	133	173	62.5627
cucccucucccccuuuuccCAGCUAAUUUUACAACCUGAG	chr19:3369254-3369532(+)$1	278	151	191	59.7417
aauguucguguuuguuuguuuguuuguuuUUAuucuuuaa	chr2:17866084-17866452(-)$1	368	322	362	62.5627
UUCUGUCUCAAUCUCUUUUCUCCUACUAAACUAUACUUCU	chr13:33208015-33208328(+)$1	313	94	134	62.6150
uauaucuaucuaucuaucuaucuaucuaucuaucuaucua	chr15:82081013-82081315(-)$1	302	63	103	56.2944
uuuucuuucuuccuuucCCuuuauuauuuuuaaaaauaua	chr2:69643021-69643326(-)$1	305	190	230	58.6845
CCCUAAAUCUCUCUCAAAUUAUUCAUCCAUCCUCAUUACG	chr11:241664-241944(+)$1	280	35	75	61.5735
gaaaaugucuuuuauauuuacccuuucucuuacuccuugu	chr19:46883665-46883936(+)$1	271	70	110	57.7062
uucuuucuuucuucuuuccgucuuucuuucuuuucuuucu	chr22:49838978-49839261(-)$1	283	101	141	62.6150
ucuuucccucacuaauucuuuccuucucACCGCCUGCCUU	chr2:109209737-109209973(+)$1	236	83	123	62.6150
uuucuuucuuucuuucucuuucucuuucucucucuuuuuu	chr21:38240430-38240669(-)$1	239	115	155	62.5627
Ucugucuccaacuugccuccuuuaaucuauucuuaauaca	chr8:91305447-91305716(+)$1	269	111	151	53.3939
ccuuccuuccuuucuucucuuucucucccugucucccccg	chr5:64092586-64092964(+)$1	378	143	183	62.5220
uuuccucuucccuuuucucccucuuucccacucuaccccc	chr5:102508077-102508373(+)$1	296	89	129	62.6254
GAUAAGCUCCUUCUCUUUCUCUCUCUUCAAUCUGCCUCGC	chr10:103587110-103587367(-)$1	257	153	193	52.0634
uccuuucucuuuccuuucucuuuucuuuUgucucacuuug	chrX:69683981-69684276(+)$1	295	128	168	62.6254
ACCCUGUCUAGCUACUCCUUUCACUUUCCUUCUUAUCAUG	chr20:56976359-56976614(+)$1	255	26	66	50.1570
uuccuuguauccuuuucauuuccugacucucuuauccucu	chr22:25908276-25908602(+)$1	326	16	56	62.6150
UCUGCUUUUACCCUUUCCCAACCCUUUCUUCAAAUGCAGA	chr7:128689058-128689317(-)$1	259	107	147	50.4523
UGUCAUGAUUUCUUAUUUUCCUUUGUUCACACUUUUCCCC	chr3:47131141-47131456(-)$1	315	76	116	53.9372
CUCCCAAGUCCCCAUCAGUUUCUUUCUUACUCUCCCCAUG	chrX:76849384-76849637(-)$1	253	197	237	62.3390
UUCACUUCUUUCCAUUUCUGUCUUUACUUCCCUCCUUACU	chr1:111664813-111665122(-)$1	309	88	128	62.5627
uucucuucucuguccuucucuguucuuauuucaccucuca	chr17:78523907-78524214(+)$1	307	117	157	62.5627
gacacuucuacuucuguuuuucuuaucccuuaaauuuucu	chr14:58960826-58961081(+)$1	255	54	94	57.3394
uuccucuaucuaucuaucuaucuaucuaucuaucuaucua	chr3:185383630-185383906(-)$1	276	56	96	62.6150
cauuccuugcuucuuuuucuuucacuucucuCUGUCCAUA	chr7:129099530-129099743(+)$1	213	149	189	62.5644
uuccuucuccuuauuuucuuucuucuuuaccacacggcua	chr1:207859465-207859709(+)$1	244	81	121	52.7265
UCUCUUCUUUCCUUUCUUUCUUgucucguugugcugccca	chr1:40331466-40331707(-)$1	241	173	213	50.9040
UUCGUUCGuucuuucuuucuuucuuucuuucuuucucucu	chr2:39713938-39714222(+)$1	284	12	52	54.9996
GAGUCCCCUUCCUGUAUCCCUAUAUCCUAACGUCCUUUUC	chr7:102021170-102021430(+)$1	260	45	85	59.3122
GUUUGGGGUucucucacccucuuucucuuuccuucccucc	chr19:18280144-18280500(+)$1	356	84	124	52.6566
ucucuuucucucccucucuuucuuucuuucucucuuucuc	chr15:27440352-27440572(+)$1	220	98	138	62.6254
uccuuuuuccuuuuucuuucucccaaacuuuuuccuuuuc	chr2:99197909-99198154(+)$1	245	85	125	62.5220
ccuucuuccuucucuccucugucuuuuccucucccucuuc	chr2:218705644-218705907(-)$1	263	95	135	62.6254
ccccuuucucucucuuccucucuaucuuuguuaaucuccg	chr19:18458149-18458426(+)$1	277	125	165	62.6254
uuuccuuUUCCCCACCCCCGucucucucucucucucccca	chr10:30593466-30593735(-)$1	269	124	164	62.6106
ugucUCUCUCUCUCUUUCUuucuuucuucuuucuuuuuug	chr3:136586027-136586271(+)$1	244	66	106	57.7062
UCUUUCACGuucuuccuccuccuucuccuccuccugcuuu	chr3:50060591-50060841(+)$1	250	26	66	62.6150
ucuucuuuccucucugucccuucucuuuccccucUCAACC	chr17:30808482-30808709(+)$1	227	127	167	62.5627
cauccauccauccauccacccagcuauucuuccauucauu	chr16:23858587-23858854(+)$1	267	194	234	62.5220
GUUCCACUUUGCUUUCUUCUCUCCCCUCUCUCCUCUGUCC	chr6:12081962-12082200(+)$1	238	83	123	61.4068
uaucuucucuuucucucccucucucucCCAUCCUUAUUCU	chr3:24202792-24203104(-)$1	312	156	196	62.4405
AUAAUCuccucuucgucaucaucuuuuuccucucgcuccu	chr7:12416995-12417210(-)$1	215	43	83	53.7320
uacucccucGUUCCUGCUCUUCUUCUCUUUUCAUACUCAC	chr3:152048827-152049041(+)$1	214	89	129	62.6150
ucucugccucuucacccucaucucccacuacacuaucucu	chr10:88630640-88630966(+)$1	326	107	147	62.6150
AUAAUCuccucuucgucaucaucuuuuuccucucgcuccu	chr7:12416977-12417195(-)$1	218	28	68	53.7320

#DB
.......................................)	chr16:11559504-11559851(-)$1	1	61	101	62.5220
.......................................)	chr10:72182661-72182906(+)$1	1	75	115	62.6254
.......................................)	chr17:55539142-55539403(+)$1	1	74	114	62.6106
........................................	chr7:86534167-86534431(-)$1	1	59	99	62.6150
.......................................)	chr7:107049976-107050231(-)$1	1	143	183	62.6106
.......................................)	chr4:25242378-25242687(+)$1	1	224	264	62.5220
.......................................)	chr6:20999404-20999673(+)$1	1	107	147	62.5627
.((((..................................)	chr17:6901425-6901682(-)$1	1	96	136	56.3797
.......................................)	chr1:197094441-197094738(-)$1	1	106	146	62.3390
(......................................)	chr1:52004559-52004839(+)$1	1	55	95	61.3046
........................................	chrX:73047252-73047485(-)$1	1	77	117	62.6150
.......................................)	chr12:120150437-120150690(-)$1	1	143	183	62.6254
.......................................)	chr11:86853732-86854014(+)$1	1	143	183	62.5627
.......................................)	chr5:139848571-139848838(+)$1	1	133	173	62.5627
(....................................).)	chr19:3369254-3369532(+)$1	1	151	191	59.7417
.......................................)	chr2:17866084-17866452(-)$1	1	322	362	62.5627
........................................	chr13:33208015-33208328(+)$1	1	94	134	62.6150
(((((..................................)	chr15:82081013-82081315(-)$1	1	63	103	56.2944
(((....................................)	chr2:69643021-69643326(-)$1	1	190	230	58.6845
(......................................)	chr11:241664-241944(+)$1	1	35	75	61.5735
((((...................................)	chr19:46883665-46883936(+)$1	1	70	110	57.7062
........................................	chr22:49838978-49839261(-)$1	1	101	141	62.6150
........................................	chr2:109209737-109209973(+)$1	1	83	123	62.6150
.......................................)	chr21:38240430-38240669(-)$1	1	115	155	62.5627
(((((................................)))	chr8:91305447-91305716(+)$1	1	111	151	53.3939
.......................................)	chr5:64092586-64092964(+)$1	1	143	183	62.5220
.......................................)	chr5:102508077-102508373(+)$1	1	89	129	62.6254
))).(((...............................))	chr10:103587110-103587367(-)$1	1	153	193	52.0634
.......................................)	chrX:69683981-69684276(+)$1	1	128	168	62.6254
(((.((..............................)).)	chr20:56976359-56976614(+)$1	1	26	66	50.1570
........................................	chr22:25908276-25908602(+)$1	1	16	56	62.6150
(((((..............................)))))	chr7:128689058-128689317(-)$1	1	107	147	50.4523
.((..((................................)	chr3:47131141-47131456(-)$1	1	76	116	53.9372
.......................................)	chrX:76849384-76849637(-)$1	1	197	237	62.3390
.......................................)	chr1:111664813-111665122(-)$1	1	88	128	62.5627
.......................................)	chr17:78523907-78524214(+)$1	1	117	157	62.5627
((((...................................)	chr14:58960826-58961081(+)$1	1	54	94	57.3394
........................................	chr3:185383630-185383906(-)$1	1	56	96	62.6150
.......................................)	chr7:129099530-129099743(+)$1	1	149	189	62.5644
..((...............................))..)	chr1:207859465-207859709(+)$1	1	81	121	52.7265
..............................))).))...)	chr1:40331466-40331707(-)$1	1	173	213	50.9040
.................................))))...	chr2:39713938-39714222(+)$1	1	12	52	54.9996
(((....................................)	chr7:102021170-102021430(+)$1	1	45	85	59.3122
(..(((((...............................)	chr19:18280144-18280500(+)$1	1	84	124	52.6566
.......................................)	chr15:27440352-27440572(+)$1	1	98	138	62.6254
.......................................)	chr2:99197909-99198154(+)$1	1	85	125	62.5220
.......................................)	chr2:218705644-218705907(-)$1	1	95	135	62.6254
.......................................)	chr19:18458149-18458426(+)$1	1	125	165	62.6254
.......................................)	chr10:30593466-30593735(-)$1	1	124	164	62.6106
((((...................................)	chr3:136586027-136586271(+)$1	1	66	106	57.7062
........................................	chr3:50060591-50060841(+)$1	1	26	66	62.6150
.......................................)	chr17:30808482-30808709(+)$1	1	127	167	62.5627
.......................................)	chr16:23858587-23858854(+)$1	1	194	234	62.5220
(......................................)	chr6:12081962-12082200(+)$1	1	83	123	61.4068
.......................................)	chr3:24202792-24203104(-)$1	1	156	196	62.4405
................................)))))...	chr7:12416995-12417210(-)$1	1	43	83	53.7320
........................................	chr3:152048827-152049041(+)$1	1	89	129	62.6150
........................................	chr10:88630640-88630966(+)$1	1	107	147	62.6150
................................)))))...	chr7:12416977-12417195(-)$1	1	28	68	53.7320

#PSSM
^ : 0.69	e : 0.10	c : 0.05	d : 0.03	a : 0.03	! : 0.03	+ : 0.01	i : 0.01	f : 0.01	
^ : 0.76	e : 0.08	d : 0.03	c : 0.03	! : 0.03	i : 0.01	f : 0.01	b : 0.01	
^ : 0.76	e : 0.08	d : 0.03	c : 0.03	b : 0.03	i : 0.01	f : 0.01	! : 0.01	
^ : 0.79	e : 0.10	d : 0.03	: : 0.01	[ : 0.01	! : 0.01	b : 0.01	
^ : 0.86	e : 0.06	d : 0.01	c : 0.01	b : 0.01	! : 0.01	
^ : 0.93	b : 0.03	c : 0.01	e : 0.01	
^ : 0.94	c : 0.01	b : 0.01	e : 0.01	
^ : 0.98	e : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.98	c : 0.01	
^ : 0.98	c : 0.01	
^ : 0.94	e : 0.03	c : 0.01	
^ : 0.93	e : 0.03	] : 0.01	d : 0.01	
^ : 0.93	e : 0.03	b : 0.01	d : 0.01	
^ : 0.89	e : 0.05	b : 0.03	d : 0.01	
^ : 0.88	e : 0.05	b : 0.03	3 : 0.01	d : 0.01	
^ : 0.84	4 : 0.05	e : 0.03	a : 0.01	b : 0.01	2 : 0.01	3 : 0.01	
^ : 0.83	4 : 0.05	] : 0.03	e : 0.03	c : 0.01	2 : 0.01	3 : 0.01	
c : 0.18	^ : 0.16	d : 0.15	g : 0.13	e : 0.13	= : 0.05	4 : 0.05	h : 0.03	i : 0.03	f : 0.03	b : 0.01	

#score	3541.361223418213
#seq	59
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_UTR_m2_run1.txt

#BEAR
dddddddoooooodddd333	chr3:9519289-9519511(+)$1	222	30	50	11.6443
gggggggooooooggggggg	chr1:203771757-203772006(+)$1	249	64	84	10.2120
ee[eeeeennnnneeeee]e	chr17:79845685-79845939(-)$1	254	127	147	9.7451
::eeeeeooooooeeeee::	chr2:188330076-188330297(-)$1	221	169	189	10.4215
eeee[cccooooooccc22e	chr22:22841642-22841893(-)$1	251	67	87	8.9573
!!eeeeeooooooeeeeecc	chr22:21304646-21304862(+)$1	216	174	194	13.5911
eeee[eeeeellleeeee]e	chr7:100278770-100279029(-)$1	259	226	246	8.2377
[a[ddddoooooodddda]g	chr5:133707175-133707418(+)$1	243	17	37	11.6651
cceeeeeooooooeeeee55	chr1:222906333-222906581(+)$1	248	208	228	12.3307
::eeeeeooooooeeeee:b	chr1:28832465-28832699(+)$1	234	188	208	10.9810
EEeeeeeooooooeeeeeee	chr13:107196026-107196278(-)$1	252	47	67	11.2047
dddddddoooooodddd333	chr3:9519281-9519489(+)$1	208	38	58	11.6443
!!eeeeennnnneeeee22d	chr1:11084244-11084494(+)$1	250	20	40	9.7185
!!eeeeeooooooeeeeecc	chr22:21304623-21304846(+)$1	223	197	217	13.5911
###ddddooooooddddbbf	chr11:27516821-27517126(-)$1	305	155	175	10.3895
!!eeeeeooooooeeeee22	chr1:1498763-1499024(-)$1	261	29	49	13.9295
!!eeeeeooooooeeeee22	chr10:104209487-104209737(+)$1	250	185	205	13.9295
iiiiiiiooooooiiiiiii	chr12:123779027-123779288(-)$1	261	163	183	10.0819
[ffffffooooooffffffd	chr17:79531330-79531594(-)$1	264	145	165	8.7646
gggggggooooooggggggg	chr11:62360765-62361019(-)$1	254	62	82	10.2120
cc[eeeeennnnneeeee]c	chr1:28832457-28832665(+)$1	208	91	111	10.2026
ccc[cccooooooccc]ccc	chr3:196659520-196659731(+)$1	211	149	169	9.5310
gggggggooooooggggggg	chr3:152881388-152881617(+)$1	229	190	210	10.2120
cc[eeeeennnnneeeee]c	chr21:34821592-34821891(-)$1	299	112	132	10.2026
ddeeeeeooooooeeeee::	chr21:34896523-34896795(-)$1	272	175	195	11.6562
iiiiiiiooooooiiiiiii	chr11:47490095-47490359(-)$1	264	167	187	10.0819
c!!ddddoooooodddd22c	chr22:20114584-20114815(+)$1	231	116	136	11.8249
ee[ddddoooooodddd333	chr22:21304584-21304811(+)$1	227	172	192	11.8872
dddddddoooooodddd333	chr1:36386816-36387047(+)$1	231	144	164	11.6443
cceeeeeooooooeeeee55	chr19:34891857-34892119(+)$1	262	27	47	12.3307
c[eeeeeooooooeeeeecc	chr15:41573168-41573454(+)$1	286	167	187	13.3612
gggggggooooooggggggg	chr1:24999060-24999292(+)$1	232	199	219	10.2120
dddddddoooooodddd333	chr1:36386800-36387016(+)$1	216	160	180	11.6443
ccceeeeennnnneeeee]c	chr11:65180375-65180662(+)$1	287	45	65	9.9423
::eeeeeooooooeeeee::	chr2:188330017-188330276(-)$1	259	148	168	10.4215
c:eeeeeooooooeeeee:=	chr19:11256982-11257249(-)$1	267	44	64	11.9409
!!eeeeeooooooeeeee22	chr17:40732902-40733161(-)$1	259	45	65	13.9295
##eeeeeooooooeeeee33	chr3:133307584-133307812(+)$1	228	172	192	14.1699
eeeeeeeeemmmmeeeee]e	chr16:3777269-3777583(-)$1	314	239	259	8.0826
cc[ddddooooooddddccc	chr19:54972095-54972323(+)$1	228	119	139	11.1384
b[eeeeennnnneeeee]bb	chr5:148875173-148875380(-)$1	207	3	23	8.7070
[a[eeeeennnnneeeee]a	chr14:81686746-81687065(-)$1	319	258	278	10.3245
::eeeeeooooooeeeeecc	chr20:61827313-61827582(-)$1	269	91	111	11.6899
b[eeeeeooooooeeeee]b	chr6:24719184-24719440(-)$1	256	154	174	13.3829
b!!ddddoooooodddd22b	chr6:21232149-21232443(+)$1	294	154	174	11.4110
"""ddddoooooodddd333	chr8:26268722-26268978(+)$1	256	21	41	12.2729
"""eeeeennnnneeeee]b	chr1:113212896-113213163(+)$1	267	41	61	10.1143

#otherMatches

#Seq PSSM
ACUUUUCAAAAUCGAAAUCA	chr3:9519289-9519511(+)$1	222	30	50	11.6443
AGUUCAUCUUUAAAUGAACU	chr1:203771757-203772006(+)$1	249	64	84	10.2120
GUACCGAGUUAUUUUUGGGA	chr17:79845685-79845939(-)$1	254	127	147	9.7451
ccucccaccuagcugggacu	chr2:188330076-188330297(-)$1	221	169	189	10.4215
UUAAUUUAUuuuuuuaauuu	chr22:22841642-22841893(-)$1	251	67	87	8.9573
ccucccaaguagcugggacu	chr22:21304646-21304862(+)$1	216	174	194	13.5911
UUUGCACAGGAGGCCUGUCU	chr7:100278770-100279029(-)$1	259	226	246	8.2377
ggcgAUCCACAGUGAUUcgg	chr5:133707175-133707418(+)$1	243	17	37	11.6651
ccucccgaguagcugggauu	chr1:222906333-222906581(+)$1	248	208	228	12.3307
AUGCUAUAGAUCAGUAGCCG	chr1:28832465-28832699(+)$1	234	188	208	10.9810
AAGUUAGCUUGUUCUAAUAG	chr13:107196026-107196278(-)$1	252	47	67	11.2047
ACUUUUCAAAAUCGAAAUCA	chr3:9519281-9519489(+)$1	208	38	58	11.6443
CCUGUCAUGCAUUGACACCU	chr1:11084244-11084494(+)$1	250	20	40	9.7185
ccucccaaguagcugggacu	chr22:21304623-21304846(+)$1	223	197	217	13.5911
cucggcucacuucagccucc	chr11:27516821-27517126(-)$1	305	155	175	10.3895
ccucccaaagugcugggauu	chr1:1498763-1499024(-)$1	261	29	49	13.9295
ccucccacagugcugggauu	chr10:104209487-104209737(+)$1	250	185	205	13.9295
GCAAGAUGCCAAAAUCUUGU	chr12:123779027-123779288(-)$1	261	163	183	10.0819
caguugcacaaucguaacuc	chr17:79531330-79531594(-)$1	264	145	165	8.7646
GGGCGUGCACUGCCAUGUCu	chr11:62360765-62361019(-)$1	254	62	82	10.2120
CUCUCUCCUUUUUGGAGACA	chr1:28832457-28832665(+)$1	208	91	111	10.2026
AGUUCAAAAUGUCUUGUACU	chr3:196659520-196659731(+)$1	211	149	169	9.5310
UUUCCAGGAGUAGCUGGAAA	chr3:152881388-152881617(+)$1	229	190	210	10.2120
GUUACACAGAUUUUGUGUUG	chr21:34821592-34821891(-)$1	299	112	132	10.2026
ccucccaaaaugcugggauu	chr21:34896523-34896795(-)$1	272	175	195	11.6562
AUUUAAACUUGCAUUUGAAU	chr11:47490095-47490359(-)$1	264	167	187	10.0819
ACUCAACAUUCAGGUUGUUU	chr22:20114584-20114815(+)$1	231	116	136	11.8249
aguggcgcaaucucgccuuc	chr22:21304584-21304811(+)$1	227	172	192	11.8872
CUUGGUCUCUGUUGGCCUUG	chr1:36386816-36387047(+)$1	231	144	164	11.6443
ccucccacagugcugggauu	chr19:34891857-34892119(+)$1	262	27	47	12.3307
caugagccaccgugcucagc	chr15:41573168-41573454(+)$1	286	167	187	13.3612
AAAGUAUAAAUGAAUAUUUU	chr1:24999060-24999292(+)$1	232	199	219	10.2120
CUUGGUCUCUGUUGGCCUUG	chr1:36386800-36387016(+)$1	216	160	180	11.6443
AGCGCAGGCUGUCCCUGCUG	chr11:65180375-65180662(+)$1	287	45	65	9.9423
ccucccaccuagcugggacu	chr2:188330017-188330276(-)$1	259	148	168	10.4215
ccucccaaagugcugggauu	chr19:11256982-11257249(-)$1	267	44	64	11.9409
UCUUUUGUUAAACCAGGAUU	chr17:40732902-40733161(-)$1	259	45	65	13.9295
UUGGUUAAUUAAGUAACCUA	chr3:133307584-133307812(+)$1	228	172	192	14.1699
CUUUAAACAUUUAUGUUUAA	chr16:3777269-3777583(-)$1	314	239	259	8.0826
UGCGCUCCAGGAAGAGCCAC	chr19:54972095-54972323(+)$1	228	119	139	11.1384
AAAAAAGUAAUUCUUUUGUC	chr5:148875173-148875380(-)$1	207	3	23	8.7070
GGGGGCUUCGUUCAGGCUGC	chr14:81686746-81687065(-)$1	319	258	278	10.3245
UUUUUUUUUUUUUGAAAAUC	chr20:61827313-61827582(-)$1	269	91	111	11.6899
GCUGUGUUUUAUUGCACACC	chr6:24719184-24719440(-)$1	256	154	174	13.3829
cuuggcucacugcagccuug	chr6:21232149-21232443(+)$1	294	154	174	11.4110
UGAUAUUUUUUACGAUAAUU	chr8:26268722-26268978(+)$1	256	21	41	12.2729
CUUGUAAUUUUCUGUUACUG	chr1:113212896-113213163(+)$1	267	41	61	10.1143

#DB
(((((((......))))...	chr3:9519289-9519511(+)$1	1	30	50	11.6443
(((((((......)))))))	chr1:203771757-203772006(+)$1	1	64	84	10.2120
((.(((((.....))))).)	chr17:79845685-79845939(-)$1	1	127	147	9.7451
..(((((......)))))..	chr2:188330076-188330297(-)$1	1	169	189	10.4215
((((.(((......)))..)	chr22:22841642-22841893(-)$1	1	67	87	8.9573
..(((((......)))))))	chr22:21304646-21304862(+)$1	1	174	194	13.5911
((((.(((((...))))).)	chr7:100278770-100279029(-)$1	1	226	246	8.2377
.(.((((......))))).)	chr5:133707175-133707418(+)$1	1	17	37	11.6651
(((((((......)))))..	chr1:222906333-222906581(+)$1	1	208	228	12.3307
..(((((......))))).(	chr1:28832465-28832699(+)$1	1	188	208	10.9810
(((((((......)))))((	chr13:107196026-107196278(-)$1	1	47	67	11.2047
(((((((......))))...	chr3:9519281-9519489(+)$1	1	38	58	11.6443
..(((((.....)))))..)	chr1:11084244-11084494(+)$1	1	20	40	9.7185
..(((((......)))))))	chr22:21304623-21304846(+)$1	1	197	217	13.5911
...((((......)))))))	chr11:27516821-27517126(-)$1	1	155	175	10.3895
..(((((......)))))..	chr1:1498763-1499024(-)$1	1	29	49	13.9295
..(((((......)))))..	chr10:104209487-104209737(+)$1	1	185	205	13.9295
(((((((......)))))))	chr12:123779027-123779288(-)$1	1	163	183	10.0819
.((((((......)))))))	chr17:79531330-79531594(-)$1	1	145	165	8.7646
(((((((......)))))))	chr11:62360765-62361019(-)$1	1	62	82	10.2120
((.(((((.....))))).)	chr1:28832457-28832665(+)$1	1	91	111	10.2026
(((.(((......))).)))	chr3:196659520-196659731(+)$1	1	149	169	9.5310
(((((((......)))))))	chr3:152881388-152881617(+)$1	1	190	210	10.2120
((.(((((.....))))).)	chr21:34821592-34821891(-)$1	1	112	132	10.2026
))(((((......)))))..	chr21:34896523-34896795(-)$1	1	175	195	11.6562
(((((((......)))))))	chr11:47490095-47490359(-)$1	1	167	187	10.0819
(..((((......))))..)	chr22:20114584-20114815(+)$1	1	116	136	11.8249
((.((((......))))...	chr22:21304584-21304811(+)$1	1	172	192	11.8872
(((((((......))))...	chr1:36386816-36387047(+)$1	1	144	164	11.6443
(((((((......)))))..	chr19:34891857-34892119(+)$1	1	27	47	12.3307
(.(((((......)))))))	chr15:41573168-41573454(+)$1	1	167	187	13.3612
(((((((......)))))))	chr1:24999060-24999292(+)$1	1	199	219	10.2120
(((((((......))))...	chr1:36386800-36387016(+)$1	1	160	180	11.6443
((((((((.....))))).)	chr11:65180375-65180662(+)$1	1	45	65	9.9423
..(((((......)))))..	chr2:188330017-188330276(-)$1	1	148	168	10.4215
).(((((......))))).(	chr19:11256982-11257249(-)$1	1	44	64	11.9409
..(((((......)))))..	chr17:40732902-40733161(-)$1	1	45	65	13.9295
..(((((......)))))..	chr3:133307584-133307812(+)$1	1	172	192	14.1699
(((((((((....))))).)	chr16:3777269-3777583(-)$1	1	239	259	8.0826
((.((((......)))))))	chr19:54972095-54972323(+)$1	1	119	139	11.1384
(.(((((.....))))).))	chr5:148875173-148875380(-)$1	1	3	23	8.7070
.(.(((((.....))))).)	chr14:81686746-81687065(-)$1	1	258	278	10.3245
..(((((......)))))((	chr20:61827313-61827582(-)$1	1	91	111	11.6899
(.(((((......))))).)	chr6:24719184-24719440(-)$1	1	154	174	13.3829
(..((((......))))..)	chr6:21232149-21232443(+)$1	1	154	174	11.4110
...((((......))))...	chr8:26268722-26268978(+)$1	1	21	41	12.2729
...(((((.....))))).)	chr1:113212896-113213163(+)$1	1	41	61	10.1143

#PSSM
c : 0.21	! : 0.12	d : 0.10	e : 0.10	g : 0.08	: : 0.08	[ : 0.06	b : 0.06	# : 0.04	i : 0.04	" : 0.04	E : 0.02	
! : 0.17	c : 0.14	d : 0.10	e : 0.10	: : 0.10	g : 0.08	[ : 0.06	a : 0.04	# : 0.04	i : 0.04	" : 0.04	E : 0.02	f : 0.02	
e : 0.46	[ : 0.14	d : 0.08	g : 0.08	i : 0.04	c : 0.04	! : 0.04	" : 0.04	# : 0.02	f : 0.02	
e : 0.59	d : 0.23	g : 0.08	i : 0.04	f : 0.02	[ : 0.02	
e : 0.55	d : 0.23	g : 0.08	[ : 0.04	i : 0.04	f : 0.02	c : 0.02	
e : 0.57	d : 0.23	g : 0.08	c : 0.04	i : 0.04	f : 0.02	
e : 0.57	d : 0.23	g : 0.08	c : 0.04	i : 0.04	f : 0.02	
o : 0.76	e : 0.17	n : 0.04	c : 0.02	
o : 0.78	n : 0.17	e : 0.04	
o : 0.78	n : 0.17	e : 0.02	m : 0.02	
o : 0.78	n : 0.17	l : 0.02	m : 0.02	
o : 0.78	n : 0.17	l : 0.02	m : 0.02	
o : 0.78	n : 0.12	e : 0.04	l : 0.02	m : 0.02	
e : 0.57	d : 0.23	g : 0.08	i : 0.04	o : 0.02	f : 0.02	c : 0.02	
e : 0.57	d : 0.23	g : 0.08	c : 0.04	i : 0.04	f : 0.02	
e : 0.57	d : 0.23	g : 0.08	c : 0.04	i : 0.04	f : 0.02	
e : 0.57	d : 0.23	g : 0.08	i : 0.04	c : 0.02	f : 0.02	] : 0.02	
e : 0.53	3 : 0.12	g : 0.08	2 : 0.08	i : 0.04	c : 0.04	a : 0.02	b : 0.02	f : 0.02	] : 0.02	
] : 0.21	3 : 0.14	2 : 0.14	c : 0.12	: : 0.10	g : 0.08	5 : 0.04	b : 0.04	i : 0.04	e : 0.02	f : 0.02	
c : 0.21	3 : 0.14	g : 0.10	e : 0.10	b : 0.10	: : 0.06	2 : 0.06	5 : 0.04	d : 0.04	i : 0.04	f : 0.02	= : 0.02	a : 0.02	

#score	523.572413614485
#seq	47
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_transcript_m1_run2.txt

#BEAR
dddd[dddd"""cccnnnnnccc333dddd]dd	chr1:227128268-227128556(+)$1	288	252	285	15.8331
[bb[eeeee[a[cccooooooccc]aeeeeebb	chr20:61472116-61472338(+)$1	222	42	75	10.8881
hh####dddd"""bbnnnnnbb333dddd333h	chr3:33429882-33430199(-)$1	317	87	120	14.7399
:dddd[ccc####bbnnnnnbb4444ccc22dd	chr19:36290931-36291207(-)$1	276	241	274	14.4461
fccc[bbccc[ddddnnnnndddd]ccc]bbcc	chr7:1028885-1029155(+)$1	270	49	82	12.7490
DDffffff[bb[cccnnnnnccc]bb333ffff	chr1:227141476-227141734(+)$1	258	5	38	11.7464
ggggggiiiiiiiiinnnnniiiiiiiii::bb	chr2:85772120-85772326(+)$1	206	26	59	12.5718
ffff!!ccc[a!!cccmmmmccc]a]ccc22ff	chr3:49721499-49721723(-)$1	224	179	212	10.9854
:::ggggggg!!cccnnnnncccgggggggeee	chr4:184090141-184090386(+)$1	245	61	94	13.2625
[ccc!!ffffffcccnnnnnccc]ffffff333	chr12:122233714-122234024(-)$1	310	265	298	13.7281
iii!!ccc####cccnnnnnccc4444ccc333	chr1:227148909-227149186(+)$1	277	44	77	17.6671
G:iiiiiiiii[cccooooooccc22iiiiiii	chr14:21484863-21485179(-)$1	316	103	136	12.5494
================mmmm=============	chr8:95434791-95435071(-)$1	280	189	222	11.8602
[cccccc!!ffffffnnnnnffffff22ccc]c	chr11:65201638-65201867(+)$1	229	32	65	11.7988
iiiiiiiii####bboooooobbiiiiiiiii0	chr6:33161603-33161984(-)$1	381	254	287	12.5037
ccc!!bb[ccc[cccnnnnnccc]cccbbccc:	chr17:42253580-42253830(-)$1	250	158	191	14.0368
bb[ccc[ccc!!cccnnnnnccc22cccccc]b	chr1:40769203-40769432(-)$1	229	83	116	15.9865
ddd####dddd[cccnnnnncccdddd22dddd	chr8:144571495-144571736(-)$1	241	121	154	13.0509
========####ddddllldddd22========	chr17:37819000-37819312(+)$1	312	15	48	12.6789
B::============nnnnn============c	chr17:4726072-4726355(+)$1	283	24	57	13.5642
eeeee"""gggggggnnnnnggggggg22eeee	chr20:61599700-61599920(+)$1	220	98	131	12.6952
a[iiiiiiiii"""bbmmmmbb22iiiiiiiii	chr20:34291554-34291782(-)$1	228	124	157	11.2447
fff[ccc####ddddnnnnndddd22cccffff	chr21:38472293-38472606(+)$1	313	255	288	13.5070
eeeeeeee!!a[cccooooooccc]a22eeeee	chr20:62326640-62326953(+)$1	313	61	94	11.1039
gbb[dddd"""ddddnnnnndddddddd]bb44	chr1:227138918-227139179(+)$1	261	206	239	11.9660
:hhhhhhhh####bbnnnnnbb333hhhhhhhh	chr1:227142486-227142801(+)$1	315	235	268	13.5704
:ccc!!bb[a!!cccnnnnnccc22a]bb22cc	chr1:22067527-22067791(-)$1	264	158	191	15.1635
:iiiiiiiii[bb[annnnna]bb]iiiiiiii	chr19:42758930-42759200(-)$1	270	79	112	13.8542
c[ccc[ccc####bbnnnnnbb4444ccc]ccc	chr17:64793091-64793318(+)$1	227	82	115	16.3639
d!!bb[bb"""ddddnnnnndddd333bb]bb2	chr19:10801468-10801695(+)$1	227	73	106	13.1575
[bb"""a[bb"""cccmmmmccc333bb]a333	chr16:1816666-1816904(+)$1	238	59	92	11.8514
[eeeee[eeeee[bbnnnnnbb22eeeee]eee	chr17:45884980-45885284(-)$1	304	51	84	11.9284
ffffff[dddd[cccnnnnncccdddd]fffff	chr17:64795789-64796043(+)$1	254	110	143	12.7832
f[iiiiiiiiiddddmmmmdddd333iiiiiii	chr3:48555169-48555474(-)$1	305	196	229	11.2923
dddd[dddd####bbnnnnnbb333dddd]ddd	chr1:146656144-146656430(-)$1	286	68	101	14.2581
a[eeeeedddd[cccnnnnnccc]dddd22eee	chr11:65194782-65194990(+)$1	208	24	57	14.0538
a[eeeeedddd[cccnnnnnccc]dddd22eee	chr11:65194757-65194974(+)$1	217	49	82	14.0538
gggga[ccc"""cccnnnnnccc55555ccc]a	chr17:78674711-78675031(+)$1	320	16	49	13.5355
[bb####ccc!!cccnnnnnccc22ccc22bbe	chr17:26904629-26904895(-)$1	266	72	105	16.0177
:::ggggggga[a[annnnna]a]a]ggggggg	chr20:44978774-44978986(-)$1	212	116	149	12.6875
&&&&gggggggcccooooooccc333ggggggg	chr20:61599353-61599586(+)$1	233	110	143	10.9471
a[eeeeedddd[cccnnnnnccc]dddd22eee	chr11:65194774-65194982(+)$1	208	32	65	14.0538
=========!!ddddnnnnndddd]========	chr8:140816060-140816314(-)$1	254	186	219	15.6558
ccc::==========nnnnn==========bb[	chr3:48451324-48451539(-)$1	215	133	166	13.1121
ggggg"""ccc[cccnnnnnccc4444ccc]gg	chr16:1818218-1818444(+)$1	226	54	87	16.7629
a[iiiiiiiii[cccnnnnnccc333iiiiiii	chr6:30890583-30890853(+)$1	270	116	149	18.5637
[hhhhhhhh"""cccnnnnnccc22hhhhhhhh	chrX:70459710-70459989(-)$1	279	196	229	15.2542
iiiiibb####cccooooooccc333bb:ccc!	chr3:48602117-48602410(-)$1	293	87	120	12.0977
fffff"""ccc[cccnnnnnccc333ccc22ff	chr17:64796370-64796612(+)$1	242	173	206	16.0909
%hhhhhhhhbb[cccnnnnnccc]bb]hhhhhh	chr16:68033147-68033478(+)$1	331	134	167	12.6642
a!!bbccc"""cccooooooccc333ccc]bb2	chr22:22312061-22312323(-)$1	262	92	125	13.2363
a[iiiiiiiiiddddmmmmdddd4444iiiiii	chr22:40805482-40805752(+)$1	270	181	214	10.9429
e####ccca[ccc[annnnna]ccc]a]cccee	chr3:9876784-9877053(+)$1	269	134	167	13.8957
[iiiiiiiii"""bbnnnnnbb22iiiiiiiii	chr16:2580577-2580955(+)$1	378	316	349	16.6866
ddd[bb!!gggggggnnnnngggggggbbdddd	chr14:24108265-24108475(+)$1	210	6	39	11.9225
!eeeee!!a"""cccnnnnnccc333a22eeee	chr3:50155933-50156236(+)$1	303	124	157	16.9315
[iiiiiiiii"""bbnnnnnbb22iiiiiiiii	chr16:2580862-2581108(+)$1	246	31	64	16.6866

#otherMatches

#Seq PSSM
UCUGGGGCUCUAGGCUCGUUGCCGCUGGCUGCA	chr1:227128268-227128556(+)$1	288	252	285	15.8331
AGGCGGGUGACGUCCAGGAGAGGGAGCGCCCCU	chr20:61472116-61472338(+)$1	222	42	75	10.8881
UGCUUGUCUAUUUAGCAUUCCUUUUUGGGUCUC	chr3:33429882-33430199(-)$1	317	87	120	14.7399
CCAGGAUGCCGAAGGAUACCCCACUAGCACCCC	chr19:36290931-36291207(-)$1	276	241	274	14.4461
GCUGUGCCUGGAGGCAGUCGGCCUGCAGUGCCA	chr7:1028885-1029155(+)$1	270	49	82	12.7490
CCGGGAGUUGCCCGAGAUGUUUGAGUGAUGCUC	chr1:227141476-227141734(+)$1	258	5	38	11.7464
CCUUGGGUUAGACCUACAGGGGGUCUGGCUGGU	chr2:85772120-85772326(+)$1	206	26	59	12.5718
UGCGCAAGGUCCCGCUGGCCAGCUGUCUUCACG	chr3:49721499-49721723(-)$1	224	179	212	10.9854
guuggucaggcuggucuugaacuccugaccgca	chr4:184090141-184090386(+)$1	245	61	94	13.2625
ACAGCCCCAUUUCUUGGAUGGAGAAAGUGGACA	chr12:122233714-122234024(-)$1	310	265	298	13.7281
AGGGGAGAUCAGUGGAAAAACCAGCCCUCUGGA	chr1:227148909-227149186(+)$1	277	44	77	17.6671
GAGCUAAGCUUGGGCUGGGCUGCUUGGGGCUUG	chr14:21484863-21485179(-)$1	316	103	136	12.5494
uauauauauauauauauauauauauauauauau	chr8:95434791-95435071(-)$1	280	189	222	11.8602
CUCUCAACAACACUGUUUCUCAGUGUCCUUGUA	chr11:65201638-65201867(+)$1	229	32	65	11.7988
AGGGCCCUGAAAUGGCCUGUCCCUAGGGCUCUC	chr6:33161603-33161984(-)$1	381	254	287	12.5037
gcucauguagccuggaccucccaagcucaagca	chr17:42253580-42253830(-)$1	250	158	191	14.0368
GCAAGGAGUACGUGGAGAACCCGGCUACCCUGG	chr1:40769203-40769432(-)$1	229	83	116	15.9865
GCCGCGGUGGGAGGGCGCAUCCCCCCAAAGGUU	chr8:144571495-144571736(-)$1	241	121	154	13.0509
GGGCAGGCCAUCAAGUGUGACUUCUGCCUGCCU	chr17:37819000-37819312(+)$1	312	15	48	12.6789
GAGUCUUUGCUGCCCCCGCUGGGUAGCAAGGAG	chr17:4726072-4726355(+)$1	283	24	57	13.5642
CUACCUCCCUUUUCGUUGCCUGAGGAGCUGGUG	chr20:61599700-61599920(+)$1	220	98	131	12.6952
UGAAAUAUAUUUUUGGGUUACUUCAGUGUGUUU	chr20:34291554-34291782(-)$1	228	124	157	11.2447
acauggguguucauuuuguuaauguucucugua	chr21:38472293-38472606(+)$1	313	255	288	13.5070
CCGGGAAGACCCAGAGCAAGAUCUCGUCCUUCC	chr20:62326640-62326953(+)$1	313	61	94	11.1039
CUGUCCCUUCAUGAGCAGUACUUAGGGGCCACC	chr1:227138918-227139179(+)$1	261	206	239	11.9660
UGGUUCCAGGAGUGGGUUGGCCUGGCUGGAACC	chr1:227142486-227142801(+)$1	315	235	268	13.5704
ugguuugauuuuuaauugauuuauuauucucac	chr1:22067527-22067791(-)$1	264	158	191	15.1635
GGGGGCAGCACGUGUGGGGGAGACUUGUUGCCC	chr19:42758930-42759200(-)$1	270	79	112	13.8542
CAUGGGGUUGUAUUCUACAUGACUGAGACGCCG	chr17:64793091-64793318(+)$1	227	82	115	16.3639
UAGAAAACUUUUGAGGAAUUCUUAUUUGUGUUA	chr19:10801468-10801695(+)$1	227	73	106	13.1575
UCUAUGUGCACUCGGCUGUGGCCAACUGGAAGA	chr16:1816666-1816904(+)$1	238	59	92	11.8514
AAGGAGAGGAGGUGAUCUGUUCUCCCUCCCCUU	chr17:45884980-45885284(-)$1	304	51	84	11.9284
UUUCCAGGGCUACUUUUGCUAAGAGCUGUGGAA	chr17:64795789-64796043(+)$1	254	110	143	12.7832
GGCUGAGGUGUAGCUGAUUGGCUGCCACAUUUC	chr3:48555169-48555474(-)$1	305	196	229	11.2923
uaguggagaaaucugauaaacacuaucucggcu	chr1:146656144-146656430(-)$1	286	68	101	14.2581
UGGGCCUGUUUGCCUGAGAAGGGGAGAUAAGGG	chr11:65194782-65194990(+)$1	208	24	57	14.0538
UGGGCCUGUUUGCCUGAGAAGGGGAGAUAAGGG	chr11:65194757-65194974(+)$1	217	49	82	14.0538
gucaggauugaagagguagacucaacaggaugc	chr17:78674711-78675031(+)$1	320	16	49	13.5355
UGGUCCUGAGCUGCGUUUUCUGCCUCUCUUCCC	chr17:26904629-26904895(-)$1	266	72	105	16.0177
AGAGCCUGGUCACACAAGGGGCGAGCACCAGGC	chr20:44978774-44978986(-)$1	212	116	149	12.6875
CCUCGAGACACGACCUCAGAGUCUCUGUGUCUC	chr20:61599353-61599586(+)$1	233	110	143	10.9471
UGGGCCUGUUUGCCUGAGAAGGGGAGAUAAGGG	chr11:65194774-65194982(+)$1	208	32	65	14.0538
UUAUUUCAGACUACUGCCAAAGUGACUGAAAUA	chr8:140816060-140816314(-)$1	254	186	219	15.6558
CCCAGGCCUCGGAGGGGCAGCCUUCGGGGCGGG	chr3:48451324-48451539(-)$1	215	133	166	13.1121
CAGUGACAGGGCGGCCAGCAGCUUCAUCCCCUA	chr16:1818218-1818444(+)$1	226	54	87	16.7629
CUGAGUGUGGGACAGAUGCCCUGAGAUUCACAC	chr6:30890583-30890853(+)$1	270	116	149	18.5637
CUGUGGGCGCAGGGCCUGCCGCCACUGCCUACA	chrX:70459710-70459989(-)$1	279	196	229	15.2542
GUCACCCUUUUGUCUAUGGUGGCUGUGGAGGGA	chr3:48602117-48602410(-)$1	293	87	120	12.0977
CCAUUUUAUCACAGUACUUAGCUUUUUGAGCAG	chr17:64796370-64796612(+)$1	242	173	206	16.0909
agagcuguaacacucacugcgagggucugcagc	chr16:68033147-68033478(+)$1	331	134	167	12.6642
CAAAGGGGGGAUGGAGUCAGCUGAAACCCACUG	chr22:22312061-22312323(-)$1	262	92	125	13.2363
UGAGGGGCUGCCCUGUUUGCAGGCGCAGCAGCC	chr22:40805482-40805752(+)$1	270	181	214	10.9429
GCUGAGGCCUGCCCCAUGAAGAGGCUGAGCCCC	chr3:9876784-9877053(+)$1	269	134	167	13.8957
UGACGGCCGCGCACCCCUUAGGAAGUGGCUGUC	chr16:2580577-2580955(+)$1	378	316	349	16.6866
AGGACUCAGGGUUUUAAAGCAAGACCCAGCCUU	chr14:24108265-24108475(+)$1	210	6	39	11.9225
UGUGGGUUGCCUGGUGAAUGGCCUUCCUUCCCG	chr3:50155933-50156236(+)$1	303	124	157	16.9315
UGACGGCCGCGCACCCCUUAGGAAGUGGCUGUC	chr16:2580862-2581108(+)$1	246	31	64	16.6866

#DB
((((.((((...(((.....)))...)))).))	chr1:227128268-227128556(+)$1	1	252	285	15.8331
.((.(((((.(.(((......))).))))))))	chr20:61472116-61472338(+)$1	1	42	75	10.8881
((....((((...((.....))...))))...)	chr3:33429882-33430199(-)$1	1	87	120	14.7399
.((((.(((....((.....))....)))..))	chr19:36290931-36291207(-)$1	1	241	274	14.4461
)(((.(((((.((((.....)))).))).))))	chr7:1028885-1029155(+)$1	1	49	82	12.7490
((((((((.((.(((.....))).))...))))	chr1:227141476-227141734(+)$1	1	5	38	11.7464
))))))(((((((((.....)))))))))..((	chr2:85772120-85772326(+)$1	1	26	59	12.5718
((((..(((.(..(((....))).).)))..))	chr3:49721499-49721723(-)$1	1	179	212	10.9854
...(((((((..(((.....))))))))))(((	chr4:184090141-184090386(+)$1	1	61	94	13.2625
.(((..(((((((((.....))).))))))...	chr12:122233714-122234024(-)$1	1	265	298	13.7281
(((..(((....(((.....)))....)))...	chr1:227148909-227149186(+)$1	1	44	77	17.6671
(.(((((((((.(((......)))..)))))))	chr14:21484863-21485179(-)$1	1	103	136	12.5494
((((((((((((((((....)))))))))))))	chr8:95434791-95435071(-)$1	1	189	222	11.8602
.((((((..((((((.....))))))..))).)	chr11:65201638-65201867(+)$1	1	32	65	11.7988
(((((((((....((......))))))))))).	chr6:33161603-33161984(-)$1	1	254	287	12.5037
(((..((.(((.(((.....))).)))))))).	chr17:42253580-42253830(-)$1	1	158	191	14.0368
((.(((.(((..(((.....)))..)))))).)	chr1:40769203-40769432(-)$1	1	83	116	15.9865
(((....((((.(((.....)))))))..))))	chr8:144571495-144571736(-)$1	1	121	154	13.0509
((((((((....((((...))))..))))))))	chr17:37819000-37819312(+)$1	1	15	48	12.6789
(..((((((((((((.....))))))))))))(	chr17:4726072-4726355(+)$1	1	24	57	13.5642
(((((...(((((((.....)))))))..))))	chr20:61599700-61599920(+)$1	1	98	131	12.6952
(.(((((((((...((....))..)))))))))	chr20:34291554-34291782(-)$1	1	124	157	11.2447
(((.(((....((((.....))))..)))))))	chr21:38472293-38472606(+)$1	1	255	288	13.5070
)))(((((..(.(((......))).)..)))))	chr20:62326640-62326953(+)$1	1	61	94	11.1039
(((.((((...((((.....)))))))).))..	chr1:227138918-227139179(+)$1	1	206	239	11.9660
.((((((((....((.....))...))))))))	chr1:227142486-227142801(+)$1	1	235	268	13.5704
.(((..((.(..(((.....)))..).))..))	chr1:22067527-22067791(-)$1	1	158	191	15.1635
.(((((((((.((.(.....).)).))))))))	chr19:42758930-42759200(-)$1	1	79	112	13.8542
(.(((.(((....((.....))....))).)))	chr17:64793091-64793318(+)$1	1	82	115	16.3639
(..((.((...((((.....))))...)).)).	chr19:10801468-10801695(+)$1	1	73	106	13.1575
.((...(.((...(((....)))...)).)...	chr16:1816666-1816904(+)$1	1	59	92	11.8514
.(((((.(((((.((.....))..))))).)))	chr17:45884980-45885284(-)$1	1	51	84	11.9284
((((((.((((.(((.....))))))).)))))	chr17:64795789-64796043(+)$1	1	110	143	12.7832
(.(((((((((((((....))))...)))))))	chr3:48555169-48555474(-)$1	1	196	229	11.2923
((((.((((....((.....))...)))).)))	chr1:146656144-146656430(-)$1	1	68	101	14.2581
(.(((((((((.(((.....))).))))..)))	chr11:65194782-65194990(+)$1	1	24	57	14.0538
(.(((((((((.(((.....))).))))..)))	chr11:65194757-65194974(+)$1	1	49	82	14.0538
(((((.(((...(((.....))).....))).)	chr17:78674711-78675031(+)$1	1	16	49	13.5355
.((....(((..(((.....)))..)))..)))	chr17:26904629-26904895(-)$1	1	72	105	16.0177
...((((((((.(.(.....).).).)))))))	chr20:44978774-44978986(-)$1	1	116	149	12.6875
....((((((((((......)))...)))))))	chr20:61599353-61599586(+)$1	1	110	143	10.9471
(.(((((((((.(((.....))).))))..)))	chr11:65194774-65194982(+)$1	1	32	65	14.0538
(((((((((..((((.....)))).))))))))	chr8:140816060-140816314(-)$1	1	186	219	15.6558
)))..((((((((((.....))))))))))((.	chr3:48451324-48451539(-)$1	1	133	166	13.1121
(((((...(((.(((.....)))....))).))	chr16:1818218-1818444(+)$1	1	54	87	16.7629
(.(((((((((.(((.....)))...)))))))	chr6:30890583-30890853(+)$1	1	116	149	18.5637
.((((((((...(((.....)))..))))))))	chrX:70459710-70459989(-)$1	1	196	229	15.2542
)))))((....(((......)))...)).(((.	chr3:48602117-48602410(-)$1	1	87	120	12.0977
(((((...(((.(((.....)))...)))..))	chr17:64796370-64796612(+)$1	1	173	206	16.0909
.((((((((((.(((.....))).)).))))))	chr16:68033147-68033478(+)$1	1	134	167	12.6642
(..(((((...(((......)))...))).)).	chr22:22312061-22312323(-)$1	1	92	125	13.2363
(.(((((((((((((....))))....))))))	chr22:40805482-40805752(+)$1	1	181	214	10.9429
(....((((.(((.(.....).))).).)))))	chr3:9876784-9877053(+)$1	1	134	167	13.8957
.(((((((((...((.....))..)))))))))	chr16:2580577-2580955(+)$1	1	316	349	16.6866
(((.((..(((((((.....)))))))))))))	chr14:24108265-24108475(+)$1	1	6	39	11.9225
.(((((..(...(((.....)))...)..))))	chr3:50155933-50156236(+)$1	1	124	157	16.9315
.(((((((((...((.....))..)))))))))	chr16:2580862-2581108(+)$1	1	31	64	16.6866

#PSSM
[ : 0.15	a : 0.12	: : 0.10	f : 0.10	d : 0.08	g : 0.07	i : 0.05	= : 0.05	c : 0.05	e : 0.05	h : 0.01	D : 0.01	G : 0.01	b : 0.01	B : 0.01	& : 0.01	% : 0.01	! : 0.01	
[ : 0.14	c : 0.10	i : 0.10	d : 0.08	b : 0.08	h : 0.07	f : 0.07	: : 0.07	e : 0.07	g : 0.05	= : 0.05	! : 0.03	D : 0.01	& : 0.01	# : 0.01	
i : 0.19	c : 0.12	e : 0.12	d : 0.08	f : 0.08	b : 0.07	g : 0.05	: : 0.05	= : 0.05	h : 0.05	# : 0.03	! : 0.03	[ : 0.01	& : 0.01	
i : 0.17	e : 0.12	c : 0.10	g : 0.08	[ : 0.07	# : 0.07	f : 0.07	= : 0.07	d : 0.05	h : 0.05	! : 0.03	b : 0.03	" : 0.01	& : 0.01	: : 0.01	
i : 0.17	e : 0.14	g : 0.08	! : 0.08	# : 0.07	= : 0.07	c : 0.07	[ : 0.05	f : 0.05	h : 0.05	b : 0.05	d : 0.03	" : 0.01	a : 0.01	: : 0.01	
i : 0.15	e : 0.12	c : 0.10	= : 0.08	[ : 0.07	b : 0.07	g : 0.07	" : 0.07	d : 0.05	# : 0.05	! : 0.05	h : 0.05	f : 0.03	
i : 0.17	c : 0.15	e : 0.08	b : 0.08	= : 0.08	d : 0.07	g : 0.05	[ : 0.05	" : 0.05	h : 0.05	f : 0.03	# : 0.03	! : 0.03	a : 0.01	
c : 0.17	i : 0.17	d : 0.15	= : 0.08	e : 0.05	g : 0.05	! : 0.05	" : 0.05	h : 0.05	f : 0.03	[ : 0.03	# : 0.03	b : 0.03	
c : 0.17	i : 0.17	d : 0.14	g : 0.08	# : 0.07	= : 0.07	" : 0.05	h : 0.05	e : 0.03	[ : 0.03	! : 0.03	a : 0.03	f : 0.01	b : 0.01	
# : 0.15	i : 0.15	" : 0.12	d : 0.10	c : 0.10	g : 0.08	[ : 0.05	b : 0.05	= : 0.05	f : 0.03	! : 0.03	a : 0.01	e : 0.01	
" : 0.19	# : 0.15	i : 0.10	! : 0.08	d : 0.08	a : 0.07	c : 0.07	= : 0.05	g : 0.05	[ : 0.03	b : 0.03	f : 0.03	e : 0.01	
[ : 0.26	" : 0.15	# : 0.12	d : 0.12	! : 0.08	c : 0.07	= : 0.05	f : 0.03	g : 0.03	i : 0.01	b : 0.01	e : 0.01	
c : 0.49	d : 0.14	" : 0.08	# : 0.08	= : 0.05	g : 0.03	i : 0.01	! : 0.01	f : 0.01	b : 0.01	[ : 0.01	a : 0.01	
c : 0.50	b : 0.15	d : 0.14	= : 0.05	[ : 0.05	g : 0.03	i : 0.01	f : 0.01	" : 0.01	
c : 0.45	b : 0.17	d : 0.14	= : 0.05	a : 0.05	o : 0.05	g : 0.03	i : 0.01	f : 0.01	
n : 0.75	o : 0.12	c : 0.03	m : 0.03	= : 0.01	d : 0.01	b : 0.01	
n : 0.75	o : 0.12	m : 0.10	l : 0.01	
n : 0.75	o : 0.12	m : 0.10	l : 0.01	
n : 0.75	o : 0.12	m : 0.10	l : 0.01	
n : 0.75	o : 0.12	m : 0.07	d : 0.05	
c : 0.45	b : 0.15	d : 0.14	o : 0.07	= : 0.05	a : 0.05	g : 0.03	i : 0.01	f : 0.01	
c : 0.50	b : 0.17	d : 0.14	= : 0.05	] : 0.05	g : 0.03	i : 0.01	f : 0.01	
c : 0.52	d : 0.14	2 : 0.07	3 : 0.05	= : 0.05	4 : 0.03	b : 0.03	g : 0.03	i : 0.01	f : 0.01	a : 0.01	
3 : 0.21	] : 0.15	2 : 0.15	d : 0.12	4 : 0.08	c : 0.07	g : 0.05	= : 0.05	i : 0.03	f : 0.01	b : 0.01	5 : 0.01	
3 : 0.22	2 : 0.12	d : 0.10	] : 0.08	4 : 0.08	i : 0.08	g : 0.05	= : 0.05	b : 0.03	a : 0.03	f : 0.03	c : 0.03	e : 0.01	5 : 0.01	
3 : 0.17	d : 0.14	i : 0.10	4 : 0.08	= : 0.08	c : 0.07	a : 0.05	] : 0.05	g : 0.05	b : 0.03	f : 0.03	2 : 0.03	h : 0.03	e : 0.01	5 : 0.01	
c : 0.17	d : 0.15	i : 0.15	g : 0.08	= : 0.08	4 : 0.05	e : 0.03	3 : 0.03	2 : 0.03	h : 0.03	] : 0.03	b : 0.03	a : 0.03	f : 0.01	5 : 0.01	
c : 0.19	i : 0.17	d : 0.12	b : 0.10	= : 0.08	2 : 0.08	g : 0.05	h : 0.05	e : 0.03	] : 0.03	3 : 0.01	f : 0.01	5 : 0.01	
c : 0.21	i : 0.17	2 : 0.12	= : 0.08	b : 0.07	d : 0.05	e : 0.05	] : 0.05	g : 0.05	h : 0.05	f : 0.03	3 : 0.01	: : 0.01	
i : 0.15	2 : 0.14	c : 0.14	= : 0.08	] : 0.08	e : 0.07	f : 0.07	d : 0.05	g : 0.05	h : 0.05	b : 0.03	3 : 0.01	: : 0.01	a : 0.01	
e : 0.15	i : 0.15	c : 0.12	b : 0.10	3 : 0.07	2 : 0.07	= : 0.07	f : 0.05	d : 0.05	h : 0.05	] : 0.03	g : 0.03	: : 0.01	
e : 0.15	i : 0.15	b : 0.10	d : 0.08	c : 0.08	f : 0.08	3 : 0.07	= : 0.07	] : 0.05	h : 0.05	g : 0.05	4 : 0.01	
e : 0.17	i : 0.14	d : 0.08	c : 0.08	f : 0.08	h : 0.07	b : 0.05	3 : 0.05	= : 0.05	g : 0.05	2 : 0.03	0 : 0.01	: : 0.01	4 : 0.01	a : 0.01	[ : 0.01	! : 0.01	

#score	777.2421093132949
#seq	57
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_UTR_m3_run1.txt

#BEAR
eee[a[apppppppa]a]eeeee	chr7:77166503-77166748(+)$1	245	91	114	10.8317
i[cccrrrrrrrrrccciiiiii	chr1:1510060-1510323(-)$1	263	134	157	10.4292
iiiiiiiqqqqqqqqiiiiiiii	chr12:31478334-31478596(-)$1	262	217	240	7.1868
gccc[bbpppppppbb]ccc333	chr22:50016293-50016538(-)$1	245	55	78	12.0066
[ffffffqqqqqqqqffffff]f	chr16:1428942-1429178(-)$1	236	67	90	7.0636
ff[ddddpppppppdddd]ffff	chr3:183353942-183354188(+)$1	246	125	148	11.1021
ffffcccqqqqqqqqcccggggg	chr1:212458793-212459051(+)$1	258	114	137	6.9640
[bb!!bbpppppppbb22bb]ee	chr17:62501964-62502237(-)$1	273	245	268	10.1112
dd!!cccpppppppcccdddd33	chr3:128211675-128211981(+)$1	306	46	69	11.0800
b[eeeeeaooooooa]eeeee]b	chr2:97535532-97535817(-)$1	285	11	34	6.1326
[dddd[apppppppaddddccc:	chr16:89787368-89787710(+)$1	342	3	26	10.3044
[ffffffooooooffffff]ddd	chr2:145274981-145275216(-)$1	235	120	143	6.1151
aaeeeeepppppppeeeee333a	chr20:62330182-62330422(-)$1	240	107	130	11.3664
fffffbbpppppppbb]ffffff	chr12:123997898-123998194(-)$1	296	193	216	11.2843
%%%ddddpppppppdddd4444c	chr11:2152502-2152723(-)$1	221	118	141	10.3087
dd[cccrrrrrrrrrccc]dddd	chr10:43891997-43892284(-)$1	287	243	266	9.2940
=[a[bbqqqqqqqqbb]a]====	chr22:20105348-20105583(+)$1	235	21	44	7.2483
fffffbbpppppppbb]ffffff	chr12:123997687-123998013(-)$1	326	12	35	11.2843
ggggg[bboooooobb]gggggg	chr6:3259155-3259417(+)$1	262	219	242	6.8858
ffffffrrrrrrrrrffffff::	chr17:80109773-80110027(-)$1	254	48	71	7.8007
"""ddddpppppppdddd22eee	chr22:20067968-20068234(+)$1	266	19	42	11.1383
iiii[bbpppppppbbiiiiiii	chr1:1190003-1190264(-)$1	261	233	256	11.8366
effffffpppppppffffff]ee	chr7:100027292-100027557(+)$1	265	40	63	11.0458
"ccc[bbpppppppbb]ccc22d	chr20:35491717-35491998(-)$1	281	225	248	11.5613
ffffffqqqqqqqqffffff444	chr16:1429419-1429665(-)$1	246	145	168	6.8348
##eeeeepppppppeeeee22ee	chr17:79878105-79878341(-)$1	236	17	40	10.9414
=====[bboooooobb=======	chr8:101963092-101963329(-)$1	237	10	33	7.5811
[ccc[cccooooooccc]cccbb	chr1:12656086-12656359(-)$1	273	79	102	6.7511
"""ddddpppppppdddd333ff	chr2:97534068-97534333(-)$1	265	147	170	11.9696
%%%ddddpppppppdddd4444c	chr11:2152538-2152796(-)$1	258	191	214	10.3087
!ccc[bbqqqqqqqqbb]cccgg	chr19:2425978-2426265(-)$1	287	28	51	6.8684
=======ppppppp=========	chr17:7387947-7388219(+)$1	272	87	110	12.5637
f[ccc[apppppppa]ccc]fff	chr19:13263824-13264088(+)$1	264	6	29	11.6577
ffeeeeepppppppeeeee]fff	chr19:1418628-1418878(+)$1	250	106	129	10.7656
[ddddrrrrrrrrrdddd]dddd	chr7:50860202-50860449(-)$1	247	159	182	9.1094
========oooooo=========	chr11:47379838-47380108(-)$1	270	110	133	7.9272
ggggcccpppppppccc]ggggg	chr5:138629494-138629738(+)$1	244	172	195	11.8238
=======ppppppp=========	chr12:7052898-7053148(+)$1	250	116	139	12.5637
[a[cccqqqqqqqqccc]a]eee	chr7:1889383-1889623(-)$1	240	118	141	7.4101
""eeeeepppppppeeeee4444	chr19:18547928-18548199(-)$1	271	177	200	11.6328
!gggggggooooooggggggg]b	chr6:167369852-167370093(-)$1	241	60	83	6.7514
[ffffffpppppppffffffccc	chr3:14989009-14989269(-)$1	260	88	111	11.4972
ffffffbboooooobb]ffffff	chr19:1104622-1104880(+)$1	258	3	26	6.4472
'''ddddpppppppddddccc22	chr8:102217054-102217310(-)$1	256	167	190	9.5456
%%%ddddpppppppdddd4444c	chr11:2152393-2152673(-)$1	280	68	91	10.3087
eee[cccpppppppccc]eeeee	chr7:933171-933479(+)$1	308	73	96	11.0973
%%%ddddpppppppdddd4444c	chr11:2152473-2152702(-)$1	229	97	120	10.3087
!!ffffffooooooffffffccc	chr9:130331080-130331356(-)$1	276	214	237	6.7949
!dddd[bboooooobb]dddd]d	chr5:176738850-176739091(-)$1	241	60	83	6.1727

#otherMatches

#Seq PSSM
UGGGGGUUGGGGUUGGCGCUAGC	chr7:77166503-77166748(+)$1	245	91	114	10.8317
ccggcgcggcguuggccgccccc	chr1:1510060-1510323(-)$1	263	134	157	10.4292
GAGGGUCUUUAAAUCGGCCUUUG	chr12:31478334-31478596(-)$1	262	217	240	7.1868
UUGCCCAAGGCUUCUGUGCAUUU	chr22:50016293-50016538(-)$1	245	55	78	12.0066
UCACGGCAGAGCCGGGCUGUGUC	chr16:1428942-1429178(-)$1	236	67	90	7.0636
CGGUUCUGUCCGGGAGGAAUGAC	chr3:183353942-183354188(+)$1	246	125	148	11.1021
CCCGGGCGAUGAGGGGCCGGCGU	chr1:212458793-212459051(+)$1	258	114	137	6.9640
GCUUUUUGUGUGGGGAUUGGGGA	chr17:62501964-62502237(-)$1	273	245	268	10.1112
UGGAAGUGGAAGAAACUCACCGA	chr3:128211675-128211981(+)$1	306	46	69	11.0800
CGGCGCCCGCCGUGGUGGCGCGG	chr2:97535532-97535817(-)$1	285	11	34	6.1326
ACCGCAGGAAGGGACGCGGCCGC	chr16:89787368-89787710(+)$1	342	3	26	10.3044
GGGGCGCGGAUGGGUGCUcgccg	chr2:145274981-145275216(-)$1	235	120	143	6.1151
CCCCGGCGACUAGGGCUGGCCUG	chr20:62330182-62330422(-)$1	240	107	130	11.3664
CUGGGCUUCCACAUAGACCCAGC	chr12:123997898-123998194(-)$1	296	193	216	11.2843
AUAUCUGUAUGGAUCAGGCCAAA	chr11:2152502-2152723(-)$1	221	118	141	10.3087
CAGGUUGAGAACAAAAACAUGCA	chr10:43891997-43892284(-)$1	287	243	266	9.2940
UGGGGCGUUUGGGGGUGCAGGCU	chr22:20105348-20105583(+)$1	235	21	44	7.2483
CUGGGCUUCCACAUAGACCCAGC	chr12:123997687-123998013(-)$1	326	12	35	11.2843
GGGUGGGGGCCACGCCGCACCUG	chr6:3259155-3259417(+)$1	262	219	242	6.8858
UGUGUUCACUUGAAAGACACAAA	chr17:80109773-80110027(-)$1	254	48	71	7.8007
cucccuccgggaccgaggccgcg	chr22:20067968-20068234(+)$1	266	19	42	11.1383
GUUUACAGUCAGAAUGAAACACA	chr1:1190003-1190264(-)$1	261	233	256	11.8366
GGUUCCCGGGCGAAGGGAACGCG	chr7:100027292-100027557(+)$1	265	40	63	11.0458
GCUCGCUGAGGCCGAGGGAGGCC	chr20:35491717-35491998(-)$1	281	225	248	11.5613
GUCACGGAGCCGGGUGUGACAGC	chr16:1429419-1429665(-)$1	246	145	168	6.8348
CUUCUGUAAAGCACACAGAUGUG	chr17:79878105-79878341(-)$1	236	17	40	10.9414
GGGGAUGGGUCUGACUUUUUUUG	chr8:101963092-101963329(-)$1	237	10	33	7.5811
AGGGGUGGGAGCUGCCAGCCCCC	chr1:12656086-12656359(-)$1	273	79	102	6.7511
GACCGGGACCUCCGCUCGCAGCC	chr2:97534068-97534333(-)$1	265	147	170	11.9696
AUAUCUGUAUGGAUCAGGCCAAA	chr11:2152538-2152796(-)$1	258	191	214	10.3087
UUGGAACAAAGGGUGGUACCAAA	chr19:2425978-2426265(-)$1	287	28	51	6.8684
AGGCUUUUUGUAGUGAGGUUUGC	chr17:7387947-7388219(+)$1	272	87	110	12.5637
UGGGGGUAUAAAAGGGCCUGGGU	chr19:13263824-13264088(+)$1	264	6	29	11.6577
GGGGCUGGGCCGGGCGGCCUCCU	chr19:1418628-1418878(+)$1	250	106	129	10.7656
CGCGGAUUAGCCGCCCGCCAGCC	chr7:50860202-50860449(-)$1	247	159	182	9.1094
uugugugucugucaacacaugaa	chr11:47379838-47380108(-)$1	270	110	133	7.9272
GCCAUGUUAGGAGCGCAGUGGCG	chr5:138629494-138629738(+)$1	244	172	195	11.8238
uuucuggcuuuuuaccggaaagc	chr12:7052898-7053148(+)$1	250	116	139	12.5637
CCGCCCCCCGUCCAGGGAGAGUG	chr7:1889383-1889623(-)$1	240	118	141	7.4101
AAUGCCCGAAAGUGGGGCGGGGC	chr19:18547928-18548199(-)$1	271	177	200	11.6328
ACGCGACUGACCGUGGUCGUGGG	chr6:167369852-167370093(-)$1	241	60	83	6.7514
GUUAUUGUUUUUGUCAGUGAAAG	chr3:14989009-14989269(-)$1	260	88	111	11.4972
GCGCGGUGGCGUCACAGUCGCGC	chr19:1104622-1104880(+)$1	258	3	26	6.4472
CGAUGGUGUUAAAAGCUAGGGUC	chr8:102217054-102217310(-)$1	256	167	190	9.5456
AUAUCUGUAUGGAUCAGGCCAAA	chr11:2152393-2152673(-)$1	280	68	91	10.3087
UGUGCAGGUGAGUGUUGGGCGCG	chr7:933171-933479(+)$1	308	73	96	11.0973
AUAUCUGUAUGGAUCAGGCCAAA	chr11:2152473-2152702(-)$1	229	97	120	10.3087
GCUGUCCACGCACCUGGACGACG	chr9:130331080-130331356(-)$1	276	214	237	6.7949
UGCCGGAGGGUGGGCUGCGGCUC	chr5:176738850-176739091(-)$1	241	60	83	6.1727

#DB
(((.(.(.......).).)))))	chr7:77166503-77166748(+)$1	1	91	114	10.8317
(.(((.........)))))))))	chr1:1510060-1510323(-)$1	1	134	157	10.4292
(((((((........))))))))	chr12:31478334-31478596(-)$1	1	217	240	7.1868
((((.((.......)).)))...	chr22:50016293-50016538(-)$1	1	55	78	12.0066
.((((((........)))))).)	chr16:1428942-1429178(-)$1	1	67	90	7.0636
((.((((.......)))).))))	chr3:183353942-183354188(+)$1	1	125	148	11.1021
))))(((........)))(((((	chr1:212458793-212459051(+)$1	1	114	137	6.9640
.((..((.......))..)).))	chr17:62501964-62502237(-)$1	1	245	268	10.1112
((..(((.......)))))))..	chr3:128211675-128211981(+)$1	1	46	69	11.0800
(.((((((......).))))).)	chr2:97535532-97535817(-)$1	1	11	34	6.1326
.((((.(.......)))))))).	chr16:89787368-89787710(+)$1	1	3	26	10.3044
.((((((......)))))).)))	chr2:145274981-145275216(-)$1	1	120	143	6.1151
(((((((.......)))))...)	chr20:62330182-62330422(-)$1	1	107	130	11.3664
(((((((.......)).))))))	chr12:123997898-123998194(-)$1	1	193	216	11.2843
...((((.......))))....)	chr11:2152502-2152723(-)$1	1	118	141	10.3087
((.(((.........))).))))	chr10:43891997-43892284(-)$1	1	243	266	9.2940
(.(.((........)).).))))	chr22:20105348-20105583(+)$1	1	21	44	7.2483
(((((((.......)).))))))	chr12:123997687-123998013(-)$1	1	12	35	11.2843
(((((.((......)).))))))	chr6:3259155-3259417(+)$1	1	219	242	6.8858
((((((.........))))))..	chr17:80109773-80110027(-)$1	1	48	71	7.8007
...((((.......))))..)))	chr22:20067968-20068234(+)$1	1	19	42	11.1383
((((.((.......)))))))))	chr1:1190003-1190264(-)$1	1	233	256	11.8366
(((((((.......)))))).))	chr7:100027292-100027557(+)$1	1	40	63	11.0458
.(((.((.......)).)))..)	chr20:35491717-35491998(-)$1	1	225	248	11.5613
((((((........))))))...	chr16:1429419-1429665(-)$1	1	145	168	6.8348
..(((((.......)))))..))	chr17:79878105-79878341(-)$1	1	17	40	10.9414
(((((.((......)))))))))	chr8:101963092-101963329(-)$1	1	10	33	7.5811
.(((.(((......))).)))))	chr1:12656086-12656359(-)$1	1	79	102	6.7511
...((((.......))))...))	chr2:97534068-97534333(-)$1	1	147	170	11.9696
...((((.......))))....)	chr11:2152538-2152796(-)$1	1	191	214	10.3087
.(((.((........)).)))))	chr19:2425978-2426265(-)$1	1	28	51	6.8684
(((((((.......)))))))))	chr17:7387947-7388219(+)$1	1	87	110	12.5637
(.(((.(.......).))).)))	chr19:13263824-13264088(+)$1	1	6	29	11.6577
(((((((.......))))).)))	chr19:1418628-1418878(+)$1	1	106	129	10.7656
.((((.........)))).))))	chr7:50860202-50860449(-)$1	1	159	182	9.1094
((((((((......)))))))))	chr11:47379838-47380108(-)$1	1	110	133	7.9272
(((((((.......))).)))))	chr5:138629494-138629738(+)$1	1	172	195	11.8238
(((((((.......)))))))))	chr12:7052898-7053148(+)$1	1	116	139	12.5637
.(.(((........))).).)))	chr7:1889383-1889623(-)$1	1	118	141	7.4101
..(((((.......)))))....	chr19:18547928-18548199(-)$1	1	177	200	11.6328
.(((((((......))))))).)	chr6:167369852-167370093(-)$1	1	60	83	6.7514
.((((((.......)))))))))	chr3:14989009-14989269(-)$1	1	88	111	11.4972
((((((((......)).))))))	chr19:1104622-1104880(+)$1	1	3	26	6.4472
...((((.......)))))))..	chr8:102217054-102217310(-)$1	1	167	190	9.5456
...((((.......))))....)	chr11:2152393-2152673(-)$1	1	68	91	10.3087
(((.(((.......))).)))))	chr7:933171-933479(+)$1	1	73	96	11.0973
...((((.......))))....)	chr11:2152473-2152702(-)$1	1	97	120	10.3087
..((((((......)))))))))	chr9:130331080-130331356(-)$1	1	214	237	6.7949
.((((.((......)).)))).)	chr5:176738850-176739091(-)$1	1	60	83	6.1727

#PSSM
f : 0.18	[ : 0.16	= : 0.10	% : 0.08	" : 0.08	! : 0.08	e : 0.06	i : 0.06	g : 0.06	d : 0.04	b : 0.02	a : 0.02	# : 0.02	' : 0.02	
f : 0.24	d : 0.10	[ : 0.08	c : 0.08	% : 0.08	= : 0.08	g : 0.06	" : 0.06	e : 0.04	i : 0.04	a : 0.04	b : 0.02	# : 0.02	' : 0.02	! : 0.02	
f : 0.22	e : 0.14	c : 0.12	% : 0.08	= : 0.08	[ : 0.06	d : 0.06	g : 0.06	i : 0.04	" : 0.04	b : 0.02	! : 0.02	a : 0.02	' : 0.02	
f : 0.22	d : 0.22	c : 0.16	e : 0.10	= : 0.08	[ : 0.06	g : 0.06	i : 0.04	! : 0.04	
d : 0.22	f : 0.20	c : 0.16	[ : 0.10	e : 0.10	= : 0.08	g : 0.04	a : 0.02	i : 0.02	! : 0.02	b : 0.02	
b : 0.16	f : 0.16	d : 0.16	c : 0.14	[ : 0.12	e : 0.10	= : 0.06	r : 0.04	i : 0.02	g : 0.02	
b : 0.22	d : 0.16	f : 0.10	c : 0.10	e : 0.10	r : 0.08	a : 0.06	q : 0.06	= : 0.06	i : 0.02	g : 0.02	
p : 0.57	q : 0.14	r : 0.08	b : 0.08	a : 0.02	o : 0.02	c : 0.02	= : 0.02	g : 0.02	f : 0.02	
p : 0.57	o : 0.20	q : 0.14	r : 0.08	
p : 0.57	o : 0.20	q : 0.14	r : 0.08	
p : 0.57	o : 0.20	q : 0.14	r : 0.08	
p : 0.57	o : 0.20	q : 0.14	r : 0.08	
p : 0.57	o : 0.20	q : 0.14	r : 0.08	
p : 0.57	o : 0.18	q : 0.14	r : 0.08	f : 0.02	
b : 0.22	d : 0.18	c : 0.12	f : 0.10	a : 0.08	q : 0.08	e : 0.08	= : 0.06	r : 0.04	g : 0.02	
b : 0.24	d : 0.20	c : 0.16	f : 0.14	e : 0.08	] : 0.06	= : 0.06	i : 0.02	g : 0.02	
d : 0.20	c : 0.18	] : 0.16	f : 0.14	e : 0.10	= : 0.08	i : 0.04	a : 0.02	2 : 0.02	b : 0.02	g : 0.02	
d : 0.24	f : 0.20	] : 0.12	c : 0.10	e : 0.10	= : 0.08	i : 0.06	g : 0.04	2 : 0.02	a : 0.02	
f : 0.20	e : 0.14	c : 0.12	] : 0.08	g : 0.08	4 : 0.08	= : 0.08	i : 0.06	d : 0.06	b : 0.02	2 : 0.02	3 : 0.02	a : 0.02	
f : 0.20	c : 0.12	4 : 0.10	= : 0.10	g : 0.08	d : 0.08	] : 0.08	e : 0.06	i : 0.06	3 : 0.04	2 : 0.04	b : 0.02	
f : 0.16	c : 0.12	4 : 0.12	e : 0.10	d : 0.10	= : 0.10	g : 0.08	i : 0.06	3 : 0.06	] : 0.04	2 : 0.04	
e : 0.14	f : 0.14	4 : 0.12	= : 0.10	] : 0.08	g : 0.08	i : 0.06	3 : 0.06	c : 0.06	d : 0.06	2 : 0.04	: : 0.02	b : 0.02	
f : 0.16	e : 0.14	c : 0.12	d : 0.10	= : 0.10	g : 0.08	i : 0.06	b : 0.06	3 : 0.04	: : 0.04	4 : 0.04	a : 0.02	2 : 0.02	

#score	466.01717967947155
#seq	49
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_transcript_m1_run2.txt

#BEAR
iiiiiii[ccc!!ccc[a[cccooooooccc]a]cccccc	chr5:154136430-154136705(+)$1	275	185	225	14.9373
cc[ggggggg"""ffffff[bboooooobb22ffffffgg	chr5:39073971-39074265(-)$1	294	147	187	13.3636
a[bbccc[ccc!!ffffff[cccmmmmccc333ffffff]	chr1:226258943-226259183(+)$1	240	115	155	12.6898
ffffff[bb[a[a[ccc"""cccnnnnnccc]ccc]a]a]	chr15:91455423-91455695(+)$1	272	65	105	14.6792
###bb!!eeeee[a[a[ccc[cccmmmmccc]ccc]a]a]	chrX:41193692-41193942(+)$1	250	80	120	12.1705
#ccc!!dddd!!eeeee[bb[bboooooobbbb]eeeee2	chr19:10407044-10407264(+)$1	220	101	141	10.3373
[ffffffccc!!dddd"""cccooooooccc]dddd22cc	chr11:62622112-62622344(-)$1	232	30	70	12.6011
ccc[bb[ccc[ccc"""ffffffnnnnnffffff4444cc	chr7:1474538-1474785(-)$1	247	66	106	12.5534
ggggg####ccc[ccc!!eeeeellleeeeeccc]cccgg	chr7:5569356-5569623(-)$1	267	125	165	11.5683
ffdddd[a[bba[dddd[bb[annnnna]bb]dddd]a22	chr20:5591209-5591540(-)$1	331	122	162	10.4900
+cccffffff$$$$$ffffff[ccclllccc22ffffff3	chr16:28166932-28167202(-)$1	270	101	141	11.5592
idddd[a[bb####ccc!!ddddnnnnndddd333ccc>>	chr7:139056195-139056448(+)$1	253	107	147	12.9759
ddddd[cccgggggggffffff[bblllbb]ffffff]gg	chr1:32832198-32832472(-)$1	274	194	234	11.2211
eeeee"""eeeee[eeeee!!ccclllccc22eeeee333	chr6:43745707-43745956(+)$1	249	143	183	12.6883
ffff####ccc"""a!!dddd[annnnna]dddd22a22c	chr1:245026262-245026521(-)$1	259	37	77	12.3740
dddd::ggggggg[ccc[ddddooooooddddccc22ggg	chr19:18682642-18682916(+)$1	274	157	197	9.8821
HHHggggggg!!eeeee"""cccnnnnnccc22eeeee22	chr12:56554868-56555123(+)$1	255	27	67	12.4929
eeee####===========cccooooooccc22=======	chr3:9476298-9476552(+)$1	254	186	226	14.8456
""ggggggg!!gggggggbbqqqqqqqqbb22ggggggg]	chr11:62609122-62609357(-)$1	235	45	85	9.8307
hhhhh[ccc[eeeee[ccc[a[ccclllccc]a]ccceee	chr4:174254766-174255105(-)$1	339	18	58	12.2367
eeeee"""eeeee[eeeee!!ccclllccc22eeeee333	chr6:43745756-43745983(+)$1	227	94	134	12.6883
FFFFFFggggggg[a####ddddnnnnndddda]gggggg	chrX:70767482-70767738(+)$1	256	19	59	10.9112
[a[ddddggggggg!!ffffffooooooffffff333ggg	chr2:97559889-97560189(-)$1	300	153	193	12.9132
Ddddd!!ccc!!bb"""ffffffnnnnnffffffbb22cc	chr1:35647628-35647884(-)$1	256	13	53	10.9856
==[bb[ffffff[==========lll==========ffff	chr20:42087100-42087354(+)$1	254	61	101	12.9666
444dddd]ccca[ffffff[cccnnnnncccffffff]a:	chr3:47894658-47894935(-)$1	277	159	199	11.8527
fdddd[a!!==========[bblllbb]==========22	chr17:26940991-26941300(-)$1	309	186	226	11.8225
"dddd[ffffffggggggg[cccnnnnnccc]ggggggg3	chr19:10406926-10407190(+)$1	264	100	140	15.3868
fffff####ccc[eeeee!!ccclllccc22eeeeeccc3	chr6:43745783-43746080(+)$1	297	68	108	11.9709
dddccc!!ffffff"""cccqqqqqqqqcccffffff333	chr15:56145558-56145788(-)$1	230	174	214	10.2361
"""dddd[bb[bb[bbgggggggnnnnnggggggg]bb]b	chr19:2270024-2270227(+)$1	203	29	69	11.0402
hhhhhhh!!ffffff[a"""cccmmmmccc333a]fffff	chr17:73775409-73775671(-)$1	262	48	88	11.4310
eeeeebb[ffffff"""eeeeeooooooeeeeeffffff]	chr4:26859307-26859598(+)$1	291	208	248	11.5079
!bb[ccc!!a[ccc[a!!eeeeennnnneeeee22accca	chr6:32942491-32942749(+)$1	258	20	60	11.9994
eeee####dddd[ccc[cccddddllldddd22cccccc3	chr6:43745469-43745712(+)$1	243	71	111	11.3809
[dddd[bbeeeee!!dddd!!cccmmmmccc333dddd22	chr19:11200287-11200582(+)$1	295	195	235	10.8254
g!!dddd[dddd[a!!bb[cccooooooccc]bb22a]dd	chr17:66031922-66032178(+)$1	256	153	193	11.9310
bb[ggggggg[ccc!!ccc[ccclllcccccc]cccgggg	chr7:100479927-100480179(+)$1	252	134	174	13.3012
ggggghhhhhhhh[ffffffa[annnnna]a]ffffffhh	chr6:32940644-32940939(+)$1	295	168	208	12.2018
c[ccc!!a[a[============lll============22	chr7:5569695-5569970(-)$1	275	21	61	14.5789
eeee]ffffff:ffffff!!cccnnnnnccc]ffffffcc	chr2:131968769-131969054(+)$1	285	166	206	12.7613
:::ggggggg####eeeee[cccnnnnnccc]eeeeeggg	chr10:70097697-70097963(+)$1	266	99	139	11.9313
""ggggggg!!gggggggbbqqqqqqqqbb22ggggggg]	chr11:62609091-62609322(-)$1	231	10	50	9.8307
ggggg:ggggggg[a$$$$$cccnnnnnccc333a]gggg	chrX:12994441-12994697(+)$1	256	76	116	13.9953
!!ccc[ccc[bb[eeeee!!ccc[bblllbb]ccc333ee	chr2:38977641-38977917(-)$1	276	100	140	10.7021
c[ffffffa[ffffff[bb[ddddllldddd]bb]fffff	chr6:31503429-31503671(-)$1	242	43	83	10.6323
[ccc!!cccffffff[bb[accclllccc]a]bb]fffff	chr11:568100-568380(-)$1	280	213	253	12.2276
eeeee[bb[a[bb[ffffff[bbnnnnnbbffffff]bb]	chr19:806798-807051(+)$1	253	92	132	11.4971
e[cccggggggg$$$$$ccc[ammmma]ccc]ggggggg7	chr4:71847769-71848022(+)$1	253	25	65	11.2036
[dddd[a[ccc[ddddxxxxxxxxxxxxxxxdddd]ccc]	chr17:80050092-80050317(-)$1	225	42	82	9.2653
[ccc[a[bb"""bb[ffffff[ccclllccc]ffffff22	chr17:74732714-74732970(-)$1	256	50	90	13.0046
fff[dddd####ggggggg[bbannnnna]bb]ggggggg	chr2:97535375-97535637(-)$1	262	155	195	12.4445
[bb[a[=========="""ddddnnnnndddd333=====	chr1:245026385-245026641(-)$1	256	88	128	14.0034
ggggg[ffffff[ffffff!!bblllbb22ffffffffff	chr20:42087583-42087826(+)$1	243	133	173	10.5524
ffff[ggggggg[bb!!eeeeeooooooeeeee]bbgggg	chr15:91454233-91454476(+)$1	243	108	148	11.5893
!ddddggggggg####ccc[bb[annnnna]bb]ccc>>>	chr21:44527306-44527608(-)$1	302	57	97	12.0480
[ffffff[a[bb[ccc!!ccc[annnnna]ccc4444ccc	chr10:124914102-124914367(+)$1	265	122	162	13.3995
a!!ccc[ffffff"""ccc[a[ccclllccc]a]ccc777	chrX:70586272-70586623(+)$1	351	264	304	12.3644
hhhhhbb$$$$$iiiiiiiiicccmmmmccc]iiiiiiii	chr19:13049631-13049868(+)$1	237	76	116	10.6365
$$iiiiiiiii####ggggggg[bblllbb]ggggggg22	chr17:46053121-46053361(+)$1	240	32	72	12.1301
eeeeeffffff!!dddd[bb!!ccclllccc]bb]dddd2	chr16:88725044-88725303(-)$1	259	115	155	11.0357
"ccc[ccc####dddd[bb[a[ccclllccc]a]bbdddd	chr12:123994627-123995021(-)$1	394	216	256	11.6041

#otherMatches

#Seq PSSM
ggccgcggcgcuggggguggcaggagggugcgggcccgcg	chr5:154136430-154136705(+)$1	275	185	225	14.9373
ggaccggcggggugcgggggccagagccggagccccgccu	chr5:39073971-39074265(-)$1	294	147	187	13.3636
GUGAGGCCUAUCUGGUUGGCCUUUUUGAAGACACCAACCU	chr1:226258943-226259183(+)$1	240	115	155	12.6898
GGCCUUACUGGGCUCCUCAAGGUAAAAGGCCAGGGUGGUG	chr15:91455423-91455695(+)$1	272	65	105	14.6792
AUGGCGGCUUUUGUGUGUGCGUGCGCAGGCGGGCGGAGGG	chrX:41193692-41193942(+)$1	250	80	120	12.1705
AGCUCAGGCGAGGCCGUGUGUCUGAACGGAgcgggcggcg	chr19:10407044-10407264(+)$1	220	101	141	10.3373
AAACAAGUGGCCGGCGGAACAAUGUUUUUUGGCGCCUUCC	chr11:62622112-62622344(-)$1	232	30	70	12.6011
GCUGAGGGCUGGGCUGGCUGGCUGGGUGGGCCGGGGAUGC	chr7:1474538-1474785(-)$1	247	66	106	12.5534
UUGGGGCCUGGCUUCCUGCCGCGCGCCGCGGGGACGCCUC	chr7:5569356-5569623(-)$1	267	125	165	11.5683
cgggacgcggcgggccuggggcgucggggccgaggcgcgg	chr20:5591209-5591540(-)$1	331	122	162	10.4900
UGCUUGCAGGUCUGAGGUGGUGCAGGGACUGAGACUGCUG	chr16:28166932-28167202(-)$1	270	101	141	11.5592
ACUGGGGGGAGGGGGCGGAUAUUGGGAAGAUAGCAUGCAA	chr7:139056195-139056448(+)$1	253	107	147	12.9759
CCAUUACCCCCUCCCAUUUGCAGCUGGAAGAUGUAGAGUG	chr1:32832198-32832472(-)$1	274	194	234	11.2211
CUUUCGGGUAUCUACUAGGAGUCAGGGUGAAGCCUAGAGA	chr6:43745707-43745956(+)$1	249	143	183	12.6883
GCUGUAUUGUGCAAGGAGCGCAGGGGCUCGGCGUGACGUC	chr1:245026262-245026521(-)$1	259	37	77	12.3740
GCUCAUGCGGGCCAGUCUCGGCAGGGUGGCUGGGCAGGGC	chr19:18682642-18682916(+)$1	274	157	197	9.8821
CUGACAGUAGCUGUAGGUGUAGUGGAGAACUUUUCUGCCU	chr12:56554868-56555123(+)$1	255	27	67	12.4929
UUAAGUUUAUUUUCCCUCUUUAGGGGAAUGAGCAGGGGGA	chr3:9476298-9476552(+)$1	254	186	226	14.8456
AUAAGGCCGCCGAGGCGACCGAAGUAAAGGUaucgcuucu	chr11:62609122-62609357(-)$1	235	45	85	9.8307
GCGGCGGCGUCUCGGGCCCCGGGAGCCACUUGCUGGGCUG	chr4:174254766-174255105(-)$1	339	18	58	12.2367
CUUUCGGGUAUCUACUAGGAGUCAGGGUGAAGCCUAGAGA	chr6:43745756-43745983(+)$1	227	94	134	12.6883
GGUUGGCAGAACUGAACAUGGUGGUUUGCACUUGGGUUCU	chrX:70767482-70767738(+)$1	256	19	59	10.9112
GGGGCGUGGGGGAGCUGGGUAUGUUUGGGUACCCCUCCUC	chr2:97559889-97560189(-)$1	300	153	193	12.9132
AGUUUGGUUGAAUUAUAUAGUAGGGACUCUACUAAAGACA	chr1:35647628-35647884(-)$1	256	13	53	10.9856
CCCGCGCGCUCCGCGCCCUUGGGGACCCUGGGGGCGGGGG	chr20:42087100-42087354(+)$1	254	61	101	12.9666
UCUGAGGCAGCGCCUGAAGCUGGCGCCCCCACUUCAGCCA	chr3:47894658-47894935(-)$1	277	159	199	11.8527
CCCUCACAAGGUAGGCUGUGGGGCUCUGGCAGCCUACUGA	chr17:26940991-26941300(-)$1	309	186	226	11.8225
GGGUCGCCGUgggcggcgcggcggggggcgcggcgcugcu	chr19:10406926-10407190(+)$1	264	100	140	15.3868
UUUCGGGUAUCUACUAGGAGUCAGGGUGAAGCCUAGAGAG	chr6:43745783-43746080(+)$1	297	68	108	11.9709
accaguaaaaugagccaguauuaguaauuaucucauugaa	chr15:56145558-56145788(-)$1	230	174	214	10.2361
GGGGGAGGCGUGUGUCUUUUGCGGGGUUCGCGGGAUGGGA	chr19:2270024-2270227(+)$1	203	29	69	11.0402
GGUAUGGGGCCGGGAGGUUUCCCCUUGGGGCUUUGUUCCG	chr17:73775409-73775671(-)$1	262	48	88	11.4310
GCCCAGUAGUUUGGGAUUUGCAAGAAAAUGCAAUCAAACA	chr4:26859307-26859598(+)$1	291	208	248	11.5079
GCCUGUGGAUGCUGUCAAACUGGGUCUACCGGUGAGUAGA	chr6:32942491-32942749(+)$1	258	20	60	11.9994
GGGGUCUUGCCUUCUGUGGAGAAGAUGCUUCAUUCCCAGC	chr6:43745469-43745712(+)$1	243	71	111	11.3809
GUCUGAGGGAUUUAAGGGAAACGGGGCACCGCUGUCCCCC	chr19:11200287-11200582(+)$1	295	195	235	10.8254
GUUGACUAGGCCUCGGGGGCGACGUUCAUUGACCAGGCGG	chr17:66031922-66032178(+)$1	256	153	193	11.9310
UGUCCUGCUGUCCUCAGAGAGUGGGACACCUCCAGGCAGC	chr7:100479927-100480179(+)$1	252	134	174	13.3012
GGCGCAGCUGUCGACUCGGUCGCGCGGAGGGAAUUGAGCG	chr6:32940644-32940939(+)$1	295	168	208	12.2018
CUCGGGAGGCGCGCUCCGGGGGUGCCGCUCUCGGGGCGGG	chr7:5569695-5569970(-)$1	275	21	61	14.5789
CUGCUGGUGCUGUACCAUGGGCCUCGGUGGCAGUGGUGGA	chr2:131968769-131969054(+)$1	285	166	206	12.7613
GGGGUUGUGGGUCACUAUUGCUUAAAUGGGGGGGUAGCCA	chr10:70097697-70097963(+)$1	266	99	139	11.9313
AUAAGGCCGCCGAGGCGACCGAAGUAAAGGUaucgcuucu	chr11:62609091-62609322(-)$1	231	10	50	9.8307
GUGGGAGCGGCCGGUGGGAGGGCGGGAGGCUGGGAGCGGC	chrX:12994441-12994697(+)$1	256	76	116	13.9953
UUAUGGCUCUGGGGCGGGGAGCUGGAGUCUUGGGCGAGCC	chr2:38977641-38977917(-)$1	276	100	140	10.7021
GAUGGACUCUGAUAUCUGGAAUAUAAUAUGUGCUUGAUAU	chr6:31503429-31503671(-)$1	242	43	83	10.6323
CCUGCCCACCGCACACUGCGCUGCCCCAGACCCACUGUGC	chr11:568100-568380(-)$1	280	213	253	12.2276
ACAGGGUUAGCGCGGCGGGGUGUGGGCAGCCCCUGUGGCU	chr19:806798-807051(+)$1	253	92	132	11.4971
AUUGUUCCUCAAAUGAAGCAGUGUGGAGUGUAUUGGGGAU	chr4:71847769-71848022(+)$1	253	25	65	11.2036
GCGCCAUGGCUGGGCACUGCUGCUUUCUCUUUGCCAAGUG	chr17:80050092-80050317(-)$1	225	42	82	9.2653
GCAGGUACGGGGGCGGUGGCUACGGACGCCGGAGCCGCAG	chr17:74732714-74732970(-)$1	256	50	90	13.0046
GAGACGGCUGUACGCGGGGAUCCUUCCUGCGACCCCCGCG	chr2:97535375-97535637(-)$1	262	155	195	12.4445
GGCACAUGUCUCGGGGGGAGGGGAGAGGCCCCAGGUCCCG	chr1:245026385-245026641(-)$1	256	88	128	14.0034
UUAAAUGUUUGAUGUUUAAAUUGUUGCAUGUUGAAUUCAA	chr20:42087583-42087826(+)$1	243	133	173	10.5524
UGGGGUGGGAGGAGGCUGAGCCCAUGAUGGUUCUUCCCUU	chr15:91454233-91454476(+)$1	243	108	148	11.5893
AGCCCCCCGCCGGGGGUUGGGCGCGAUCGGGGCGCAGGGU	chr21:44527306-44527608(-)$1	302	57	97	12.0480
GCGGGCUGGGCCGGUUUGGGCGCGGCGGGGGCCGGAUGAU	chr10:124914102-124914367(+)$1	265	122	162	13.3995
GAGAGCGCGAGGCGAGCCCGGGGCCAGGGGCGCAGGGAAU	chrX:70586272-70586623(+)$1	351	264	304	12.3644
GCGGGCGAUUUCUCUUCUGCGUCCCUGGGGAGCGCGGAGG	chr19:13049631-13049868(+)$1	237	76	116	10.6365
UUGACCAUGUGGCCCAGGCCAAAGCCCAGUGUUGGCCUUA	chr17:46053121-46053361(+)$1	240	32	72	12.1301
GAACACUGGGGGAGGGUGGGCCGGGAAGCCCACCGGCCUG	chr16:88725044-88725303(-)$1	259	115	155	11.0357
AGAGAGGAGAGAGGGCACAGGCGGGCCCCCCACAUGGCCC	chr12:123994627-123995021(-)$1	394	216	256	11.6041

#DB
(((((((.(((..(((.(.(((......))).).))))))	chr5:154136430-154136705(+)$1	1	185	225	14.9373
((.(((((((...((((((.((......))..))))))))	chr5:39073971-39074265(-)$1	1	147	187	13.3636
(.(((((.(((..((((((.(((....)))...)))))).	chr1:226258943-226259183(+)$1	1	115	155	12.6898
((((((.((.(.(.(((...(((.....))).))).).).	chr15:91455423-91455695(+)$1	1	65	105	14.6792
...((..(((((.(.(.(((.(((....))).))).).).	chrX:41193692-41193942(+)$1	1	80	120	12.1705
.(((..((((..(((((.((.((......)))).))))).	chr19:10407044-10407264(+)$1	1	101	141	10.3373
.(((((((((..((((...(((......))).))))..))	chr11:62622112-62622344(-)$1	1	30	70	12.6011
(((.((.(((.(((...((((((.....))))))....))	chr7:1474538-1474785(-)$1	1	66	106	12.5534
(((((....(((.(((..(((((...)))))))).)))))	chr7:5569356-5569623(-)$1	1	125	165	11.5683
((((((.(.(((.((((.((.(.....).)).)))).)..	chr20:5591209-5591540(-)$1	1	122	162	10.4900
.(((((((((.....((((((.(((...)))..)))))).	chr16:28166932-28167202(-)$1	1	101	141	11.5592
(((((.(.((....(((..((((.....))))...)))..	chr7:139056195-139056448(+)$1	1	107	147	12.9759
(((((.((((((((((((((((.((...)).)))))).))	chr1:32832198-32832472(-)$1	1	194	234	11.2211
(((((...(((((.(((((..(((...)))..)))))...	chr6:43745707-43745956(+)$1	1	143	183	12.6883
((((....(((...(..((((.(.....).))))..)..)	chr1:245026262-245026521(-)$1	1	37	77	12.3740
))))..(((((((.(((.((((......)))))))..)))	chr19:18682642-18682916(+)$1	1	157	197	9.8821
((((((((((..(((((...(((.....)))..)))))..	chr12:56554868-56555123(+)$1	1	27	67	12.4929
((((....((((((((((((((......)))..)))))))	chr3:9476298-9476552(+)$1	1	186	226	14.8456
..(((((((..(((((((((........))..))))))).	chr11:62609122-62609357(-)$1	1	45	85	9.8307
(((((.(((.(((((.(((.(.(((...))).).))))))	chr4:174254766-174255105(-)$1	1	18	58	12.2367
(((((...(((((.(((((..(((...)))..)))))...	chr6:43745756-43745983(+)$1	1	94	134	12.6883
(((((((((((((.(....((((.....))))).))))))	chrX:70767482-70767738(+)$1	1	19	59	10.9112
.(.(((((((((((..((((((......))))))...)))	chr2:97559889-97560189(-)$1	1	153	193	12.9132
(((((..(((..((...((((((.....))))))))..))	chr1:35647628-35647884(-)$1	1	13	53	10.9856
((.((.((((((.((((((((((...))))))))))))))	chr20:42087100-42087354(+)$1	1	61	101	12.9666
...)))).)))(.((((((.(((.....))))))))).).	chr3:47894658-47894935(-)$1	1	159	199	11.8527
)((((.(..((((((((((.((...)).))))))))))..	chr17:26940991-26941300(-)$1	1	186	226	11.8225
.((((.(((((((((((((.(((.....))).))))))).	chr19:10406926-10407190(+)$1	1	100	140	15.3868
(((((....(((.(((((..(((...)))..)))))))).	chr6:43745783-43746080(+)$1	1	68	108	11.9709
((((((..((((((...(((........)))))))))...	chr15:56145558-56145788(-)$1	1	174	214	10.2361
...((((.((.((.(((((((((.....))))))).)).)	chr19:2270024-2270227(+)$1	1	29	69	11.0402
(((((((..((((((.(...(((....)))...).)))))	chr17:73775409-73775671(-)$1	1	48	88	11.4310
(((((((.((((((...(((((......))))))))))).	chr4:26859307-26859598(+)$1	1	208	248	11.5079
.((.(((..(.(((.(..(((((.....)))))..)))))	chr6:32942491-32942749(+)$1	1	20	60	11.9994
((((....((((.(((.(((((((...))))..)))))).	chr6:43745469-43745712(+)$1	1	71	111	11.3809
.((((.(((((((..((((..(((....)))...))))..	chr19:11200287-11200582(+)$1	1	195	235	10.8254
(..((((.((((.(..((.(((......))).))..).))	chr17:66031922-66032178(+)$1	1	153	193	11.9310
((.(((((((.(((..(((.(((...)))))).)))))))	chr7:100479927-100480179(+)$1	1	134	174	13.3012
)))))((((((((.(((((((.(.....).).))))))))	chr6:32940644-32940939(+)$1	1	168	208	12.2018
(.(((..(.(.((((((((((((...))))))))))))..	chr7:5569695-5569970(-)$1	1	21	61	14.5789
)))).)))))).((((((..(((.....))).))))))((	chr2:131968769-131969054(+)$1	1	166	206	12.7613
...(((((((....(((((.(((.....))).))))))))	chr10:70097697-70097963(+)$1	1	99	139	11.9313
..(((((((..(((((((((........))..))))))).	chr11:62609091-62609322(-)$1	1	10	50	9.8307
))))).(((((((.(.....(((.....)))...).))))	chrX:12994441-12994697(+)$1	1	76	116	13.9953
..(((.(((.((.(((((..(((.((...)).)))...))	chr2:38977641-38977917(-)$1	1	100	140	10.7021
(.(((((((.((((((.((.((((...)))).)).)))))	chr6:31503429-31503671(-)$1	1	43	83	10.6323
.(((..(((((((((.((.((((...))).).)).)))))	chr11:568100-568380(-)$1	1	213	253	12.2276
(((((.((.(.((.((((((.((.....)))))))).)).	chr19:806798-807051(+)$1	1	92	132	11.4971
(.((((((((((.....(((.(....).))).))))))).	chr4:71847769-71848022(+)$1	1	25	65	11.2036
.((((.(.(((.((((...............)))).))).	chr17:80050092-80050317(-)$1	1	42	82	9.2653
.(((.(.((...((.((((((.(((...))).))))))..	chr17:74732714-74732970(-)$1	1	50	90	13.0046
(((.((((....(((((((.(((.....).)).)))))))	chr2:97535375-97535637(-)$1	1	155	195	12.4445
.((.(.((((((((((...((((.....))))...)))))	chr1:245026385-245026641(-)$1	1	88	128	14.0034
(((((.((((((.((((((..((...))..))))))))))	chr20:42087583-42087826(+)$1	1	133	173	10.5524
((((.(((((((.((..(((((......))))).))))))	chr15:91454233-91454476(+)$1	1	108	148	11.5893
.(((((((((((....(((.((.(.....).)).)))...	chr21:44527306-44527608(-)$1	1	57	97	12.0480
.((((((.(.((.(((..(((.(.....).)))....)))	chr10:124914102-124914367(+)$1	1	122	162	13.3995
(..(((.((((((...(((.(.(((...))).).)))...	chrX:70586272-70586623(+)$1	1	264	304	12.3644
(((((((.....((((((((((((....))).))))))))	chr19:13049631-13049868(+)$1	1	76	116	10.6365
..(((((((((....(((((((.((...)).)))))))..	chr17:46053121-46053361(+)$1	1	32	72	12.1301
(((((((((((..((((.((..(((...))).)).)))).	chr16:88725044-88725303(-)$1	1	115	155	11.0357
.(((.(((....((((.((.(.(((...))).).))))))	chr12:123994627-123995021(-)$1	1	216	256	11.6041

#PSSM
e : 0.14	[ : 0.12	f : 0.11	g : 0.08	" : 0.08	c : 0.06	d : 0.04	h : 0.04	! : 0.04	i : 0.03	a : 0.03	# : 0.03	+ : 0.01	H : 0.01	F : 0.01	D : 0.01	= : 0.01	4 : 0.01	b : 0.01	: : 0.01	$ : 0.01	
d : 0.16	f : 0.12	e : 0.12	c : 0.11	[ : 0.06	g : 0.06	" : 0.04	h : 0.04	b : 0.04	! : 0.04	i : 0.01	# : 0.01	H : 0.01	F : 0.01	a : 0.01	= : 0.01	4 : 0.01	: : 0.01	$ : 0.01	
d : 0.17	c : 0.14	f : 0.12	e : 0.12	g : 0.09	[ : 0.06	b : 0.04	h : 0.04	i : 0.03	! : 0.03	# : 0.01	H : 0.01	F : 0.01	4 : 0.01	" : 0.01	: : 0.01	
d : 0.22	g : 0.16	c : 0.16	e : 0.12	f : 0.11	[ : 0.06	b : 0.04	h : 0.04	i : 0.03	F : 0.01	
d : 0.22	g : 0.16	c : 0.11	f : 0.09	e : 0.08	b : 0.04	# : 0.04	h : 0.04	[ : 0.04	i : 0.03	! : 0.03	: : 0.01	F : 0.01	] : 0.01	a : 0.01	
[ : 0.19	g : 0.14	f : 0.11	d : 0.09	c : 0.08	! : 0.08	# : 0.08	b : 0.04	i : 0.03	" : 0.03	: : 0.03	h : 0.03	F : 0.01	a : 0.01	
g : 0.19	f : 0.14	c : 0.11	d : 0.09	[ : 0.08	# : 0.08	! : 0.06	b : 0.06	a : 0.04	i : 0.03	" : 0.03	h : 0.03	= : 0.01	
g : 0.20	[ : 0.12	c : 0.12	f : 0.12	# : 0.08	b : 0.06	! : 0.06	d : 0.03	a : 0.03	" : 0.03	e : 0.01	] : 0.01	h : 0.01	= : 0.01	$ : 0.01	i : 0.01	
g : 0.20	c : 0.19	f : 0.14	b : 0.06	e : 0.06	# : 0.06	d : 0.04	[ : 0.04	! : 0.04	= : 0.03	a : 0.03	h : 0.01	$ : 0.01	i : 0.01	
g : 0.19	f : 0.17	c : 0.16	[ : 0.08	e : 0.06	d : 0.04	b : 0.04	= : 0.04	a : 0.04	! : 0.03	# : 0.03	h : 0.01	" : 0.01	$ : 0.01	i : 0.01	
f : 0.17	g : 0.12	c : 0.11	! : 0.09	[ : 0.09	e : 0.08	# : 0.06	b : 0.04	= : 0.04	" : 0.03	$ : 0.03	d : 0.03	a : 0.01	h : 0.01	i : 0.01	
g : 0.16	f : 0.14	! : 0.11	e : 0.08	c : 0.08	# : 0.08	= : 0.06	b : 0.06	" : 0.04	[ : 0.03	a : 0.03	$ : 0.03	d : 0.03	h : 0.01	: : 0.01	
[ : 0.19	g : 0.14	f : 0.11	e : 0.09	# : 0.06	= : 0.06	b : 0.06	! : 0.04	d : 0.04	c : 0.04	" : 0.03	$ : 0.03	a : 0.01	h : 0.01	i : 0.01	
f : 0.16	[ : 0.14	c : 0.11	g : 0.09	e : 0.08	d : 0.08	= : 0.08	# : 0.06	b : 0.04	a : 0.03	$ : 0.03	" : 0.03	! : 0.01	i : 0.01	
f : 0.16	e : 0.12	c : 0.11	d : 0.08	" : 0.08	g : 0.08	= : 0.08	! : 0.06	[ : 0.04	a : 0.04	$ : 0.03	b : 0.03	# : 0.03	i : 0.01	
f : 0.16	c : 0.11	e : 0.11	d : 0.09	g : 0.09	" : 0.08	! : 0.08	= : 0.08	[ : 0.04	a : 0.03	# : 0.03	$ : 0.03	b : 0.01	i : 0.01	
f : 0.17	c : 0.11	e : 0.11	" : 0.09	g : 0.09	[ : 0.08	! : 0.08	= : 0.06	d : 0.04	b : 0.03	$ : 0.03	# : 0.01	a : 0.01	x : 0.01	i : 0.01	
f : 0.20	c : 0.12	e : 0.11	g : 0.09	" : 0.08	[ : 0.06	! : 0.06	= : 0.06	b : 0.06	d : 0.03	a : 0.01	# : 0.01	$ : 0.01	x : 0.01	i : 0.01	
f : 0.19	c : 0.14	b : 0.11	e : 0.11	" : 0.08	! : 0.06	= : 0.06	g : 0.06	[ : 0.04	d : 0.04	# : 0.01	$ : 0.01	x : 0.01	i : 0.01	
[ : 0.20	c : 0.14	f : 0.12	! : 0.11	b : 0.08	d : 0.08	e : 0.06	" : 0.04	= : 0.03	g : 0.03	$ : 0.01	a : 0.01	x : 0.01	i : 0.01	
c : 0.29	d : 0.11	f : 0.09	[ : 0.08	! : 0.08	b : 0.06	e : 0.06	a : 0.06	q : 0.04	= : 0.03	g : 0.03	x : 0.01	i : 0.01	
c : 0.35	[ : 0.12	b : 0.11	d : 0.09	f : 0.06	e : 0.06	q : 0.04	a : 0.03	= : 0.03	g : 0.03	x : 0.01	! : 0.01	
c : 0.38	o : 0.14	d : 0.08	a : 0.06	b : 0.04	[ : 0.04	q : 0.04	f : 0.03	e : 0.03	= : 0.03	n : 0.01	l : 0.01	g : 0.01	m : 0.01	x : 0.01	
n : 0.32	c : 0.17	o : 0.16	l : 0.12	m : 0.04	q : 0.04	b : 0.03	d : 0.03	[ : 0.01	x : 0.01	a : 0.01	
n : 0.33	l : 0.19	o : 0.16	m : 0.09	c : 0.09	b : 0.04	q : 0.04	x : 0.01	
n : 0.33	l : 0.30	o : 0.16	m : 0.09	q : 0.04	b : 0.03	x : 0.01	
n : 0.33	l : 0.20	o : 0.16	m : 0.08	q : 0.04	c : 0.04	= : 0.03	b : 0.03	e : 0.01	a : 0.01	x : 0.01	
n : 0.32	o : 0.16	l : 0.14	c : 0.11	m : 0.04	q : 0.04	= : 0.03	] : 0.03	d : 0.03	e : 0.01	a : 0.01	x : 0.01	b : 0.01	
c : 0.46	b : 0.09	d : 0.09	e : 0.06	a : 0.06	f : 0.04	= : 0.04	o : 0.01	] : 0.01	g : 0.01	l : 0.01	x : 0.01	2 : 0.01	n : 0.01	
c : 0.43	b : 0.14	d : 0.09	] : 0.08	e : 0.06	f : 0.04	= : 0.04	2 : 0.03	g : 0.01	x : 0.01	a : 0.01	
c : 0.38	d : 0.11	2 : 0.09	f : 0.08	b : 0.06	e : 0.06	] : 0.04	= : 0.04	3 : 0.03	a : 0.03	g : 0.01	x : 0.01	
] : 0.32	2 : 0.14	f : 0.12	d : 0.09	3 : 0.06	e : 0.06	b : 0.04	c : 0.04	= : 0.04	g : 0.03	
f : 0.19	e : 0.11	3 : 0.09	c : 0.09	b : 0.09	g : 0.09	a : 0.08	d : 0.06	2 : 0.06	= : 0.04	] : 0.03	i : 0.01	
f : 0.24	] : 0.12	c : 0.11	g : 0.11	e : 0.08	d : 0.06	3 : 0.06	= : 0.06	b : 0.06	a : 0.01	2 : 0.01	4 : 0.01	i : 0.01	
f : 0.19	c : 0.16	g : 0.12	e : 0.09	] : 0.08	d : 0.06	= : 0.06	3 : 0.04	2 : 0.04	b : 0.04	4 : 0.03	a : 0.01	i : 0.01	
f : 0.24	c : 0.12	g : 0.11	e : 0.09	] : 0.08	= : 0.08	d : 0.06	2 : 0.04	b : 0.04	4 : 0.03	3 : 0.03	a : 0.01	i : 0.01	
f : 0.24	c : 0.16	g : 0.16	e : 0.08	a : 0.06	= : 0.06	2 : 0.04	d : 0.04	4 : 0.03	] : 0.03	3 : 0.03	b : 0.01	i : 0.01	
g : 0.20	f : 0.19	c : 0.12	] : 0.08	3 : 0.06	= : 0.06	e : 0.04	2 : 0.04	d : 0.04	b : 0.03	4 : 0.01	a : 0.01	> : 0.01	7 : 0.01	i : 0.01	
g : 0.24	c : 0.16	f : 0.12	2 : 0.12	a : 0.04	e : 0.04	3 : 0.04	d : 0.04	> : 0.03	= : 0.03	] : 0.01	h : 0.01	b : 0.01	7 : 0.01	i : 0.01	
g : 0.17	2 : 0.14	] : 0.12	c : 0.11	3 : 0.11	f : 0.08	> : 0.03	= : 0.03	e : 0.03	d : 0.03	7 : 0.03	: : 0.01	b : 0.01	a : 0.01	h : 0.01	i : 0.01	

#score	746.2906936948418
#seq	62
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_CDS_m3_run2.txt

#BEAR
ddddnnnnndddd	chr17:34171562-34171871(+)$1	309	250	263	7.4920
gggoooooogggg	chr17:34171748-34172015(+)$1	267	147	160	6.7176
iiiiooooooiii	chr9:100777550-100777862(+)$1	312	24	37	6.6409
ddddnnnnndddd	chr6:111136056-111136365(-)$1	309	88	101	7.4920
ddddnnnnndddd	chr14:39649913-39650173(+)$1	260	220	233	7.4920
c!!annnnna22c	chr14:23528279-23528616(-)$1	337	124	137	5.9236
eeeeooooooeee	chr2:232319808-232320076(-)$1	268	15	28	6.3734
addddllldddd6	chr19:13054502-13054836(+)$1	334	276	289	5.5259
cccooooooccc]	chr1:150195411-150195668(-)$1	257	158	171	7.0710
cccooooooccc=	chr11:62300880-62301181(-)$1	301	248	261	7.0354
dddoooooodddd	chr14:39649800-39650031(+)$1	231	84	97	8.1247
eddddllldddd]	chr9:100774602-100774855(+)$1	253	183	196	6.1983
dddoooooodddd	chr4:39699762-39700068(+)$1	306	196	209	8.1247
ddddnnnnndddd	chr1:226349133-226349467(-)$1	334	69	82	7.4920
ggggnnnnngggg	chr11:62290434-62290675(-)$1	241	24	37	5.8563
eddddllldddd]	chr11:62284904-62285131(-)$1	227	184	197	6.1983
!!aooooooa22e	chr1:150192890-150193164(-)$1	274	189	202	6.5553
d[ddddllldddd	chr11:62298387-62298640(-)$1	253	162	175	5.8597
iiiiooooooiii	chr9:100777545-100777750(+)$1	205	29	42	6.6409

#otherMatches

#Seq PSSM
gaucgaggagguu	chr17:34171562-34171871(+)$1	309	250	263	7.4920
UGGAGGAGACCGU	chr17:34171748-34172015(+)$1	267	147	160	6.7176
UGCCUCCAUUGGC	chr9:100777550-100777862(+)$1	312	24	37	6.6409
GUACGAAGGGUGC	chr6:111136056-111136365(-)$1	309	88	101	7.4920
AACUAAUCGAGUU	chr14:39649913-39650173(+)$1	260	220	233	7.4920
ggacagggGGGAC	chr14:23528279-23528616(-)$1	337	124	137	5.9236
UGUGCCCUGUCAC	chr2:232319808-232320076(-)$1	268	15	28	6.3734
CUGGCCGCGCCAA	chr19:13054502-13054836(+)$1	334	276	289	5.5259
UGAGUUACAUUAG	chr1:150195411-150195668(-)$1	257	158	171	7.0710
GGCGUGAGGGCCA	chr11:62300880-62301181(-)$1	301	248	261	7.0354
UCAGCACAAUGAU	chr14:39649800-39650031(+)$1	231	84	97	8.1247
CAGUUAAAAAUUA	chr9:100774602-100774855(+)$1	253	183	196	6.1983
CGCGGUGCAGCGA	chr4:39699762-39700068(+)$1	306	196	209	8.1247
CCUUGUaggaagg	chr1:226349133-226349467(-)$1	334	69	82	7.4920
GAUGCCUGACAUU	chr11:62290434-62290675(-)$1	241	24	37	5.8563
CACUUGGAAAGUG	chr11:62284904-62285131(-)$1	227	184	197	6.1983
UUCUCUAAUGUUU	chr1:150192890-150193164(-)$1	274	189	202	6.5553
CAGCCUCAAAGGC	chr11:62298387-62298640(-)$1	253	162	175	5.8597
UGCCUCCAUUGGC	chr9:100777545-100777750(+)$1	205	29	42	6.6409

#DB
((((.....))))	chr17:34171562-34171871(+)$1	1	250	263	7.4920
(((......))))	chr17:34171748-34172015(+)$1	1	147	160	6.7176
((((......)))	chr9:100777550-100777862(+)$1	1	24	37	6.6409
((((.....))))	chr6:111136056-111136365(-)$1	1	88	101	7.4920
((((.....))))	chr14:39649913-39650173(+)$1	1	220	233	7.4920
(..(.....)..)	chr14:23528279-23528616(-)$1	1	124	137	5.9236
((((......)))	chr2:232319808-232320076(-)$1	1	15	28	6.3734
(((((...)))).	chr19:13054502-13054836(+)$1	1	276	289	5.5259
(((......))).	chr1:150195411-150195668(-)$1	1	158	171	7.0710
(((......))))	chr11:62300880-62301181(-)$1	1	248	261	7.0354
(((......))))	chr14:39649800-39650031(+)$1	1	84	97	8.1247
(((((...)))).	chr9:100774602-100774855(+)$1	1	183	196	6.1983
(((......))))	chr4:39699762-39700068(+)$1	1	196	209	8.1247
((((.....))))	chr1:226349133-226349467(-)$1	1	69	82	7.4920
((((.....))))	chr11:62290434-62290675(-)$1	1	24	37	5.8563
(((((...)))).	chr11:62284904-62285131(-)$1	1	184	197	6.1983
..(......)..)	chr1:150192890-150193164(-)$1	1	189	202	6.5553
(.((((...))))	chr11:62298387-62298640(-)$1	1	162	175	5.8597
((((......)))	chr9:100777545-100777750(+)$1	1	29	42	6.6409

#PSSM
d : 0.36	c : 0.15	e : 0.15	g : 0.10	i : 0.10	a : 0.05	! : 0.05	
d : 0.47	g : 0.10	i : 0.10	! : 0.10	c : 0.10	e : 0.05	[ : 0.05	
d : 0.52	g : 0.10	i : 0.10	c : 0.10	! : 0.05	e : 0.05	a : 0.05	
d : 0.42	o : 0.31	i : 0.10	a : 0.05	e : 0.05	g : 0.05	
o : 0.47	n : 0.31	d : 0.21	
o : 0.47	n : 0.31	l : 0.15	d : 0.05	
o : 0.47	n : 0.31	l : 0.21	
o : 0.47	n : 0.31	l : 0.21	
o : 0.47	n : 0.31	d : 0.15	l : 0.05	
d : 0.52	o : 0.15	g : 0.10	a : 0.10	c : 0.10	
d : 0.52	g : 0.10	i : 0.10	2 : 0.10	c : 0.10	e : 0.05	
d : 0.52	g : 0.10	i : 0.10	2 : 0.10	c : 0.10	e : 0.05	
d : 0.36	] : 0.15	g : 0.10	i : 0.10	e : 0.10	c : 0.05	6 : 0.05	= : 0.05	

#score	128.81497298268948
#seq	19
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_transcript_m3_run2.txt

#BEAR
eeeeeqqqqqqqqeeeee:	chr9:136230631-136230895(-)$1	264	32	51	15.8715
!!cccqqqqqqqqccc22c	chr1:226258938-226259149(+)$1	211	67	86	13.6142
cddddqqqqqqqqdddd]c	chr14:39795961-39796212(+)$1	251	226	245	14.2467
eeeeeqqqqqqqqeeeee]	chr10:75527478-75527763(+)$1	285	30	49	16.4034
gggggqqqqqqqqgggggg	chr7:26237349-26237596(-)$1	247	63	82	13.8135
d[cccqqqqqqqqccc]dd	chr13:111932493-111932758(+)$1	265	38	57	13.7176
gg[bbqqqqqqqqbbgggg	chr1:246804939-246805188(+)$1	249	119	138	12.7248
eeeeeqqqqqqqqeeeee2	chr17:45738370-45738597(+)$1	227	183	202	16.3166
ggg[aqqqqqqqqa]gggg	chr19:19767807-19768061(-)$1	254	125	144	13.7838
eeeeeqqqqqqqqeeeee:	chr1:19514008-19514257(-)$1	249	192	211	15.8715
eeeeeqqqqqqqqeeeee2	chr20:36718020-36718296(+)$1	276	152	171	16.3166
""cccqqqqqqqqccc444	chr3:141644261-141644490(+)$1	229	163	182	13.8316
eeeeeqqqqqqqqeeeeed	chr6:147992945-147993192(+)$1	247	116	135	16.0738
!ddddqqqqqqqqdddd22	chr6:168291451-168291704(+)$1	253	229	248	14.3071
fff[aqqqqqqqqa]ffff	chr16:258022-258303(-)$1	281	94	113	12.9872
eeeeeqqqqqqqqeeeee2	chr2:55245313-55245565(-)$1	252	147	166	16.3166
dd[bbqqqqqqqqbbdddd	chr6:150048508-150048756(-)$1	248	19	38	12.7507
eeeeeqqqqqqqqeeeee2	chr1:224573935-224574206(-)$1	271	100	119	16.3166
ccc[aqqqqqqqqa]ccc2	chr17:40468799-40469070(-)$1	271	177	196	13.6546
=====qqqqqqqq======	chr17:62480066-62480318(-)$1	252	79	98	13.9190
cc[bbqqqqqqqqbbccc3	chr2:210884280-210884529(+)$1	249	67	86	12.7475
[acccqqqqqqqqccc]a]	chr10:7841451-7841703(+)$1	252	8	27	13.9703
""cccqqqqqqqqccc333	chr18:23632660-23632918(-)$1	258	227	246	13.9982
eeeeeqqqqqqqqeeeee:	chr10:6150643-6150917(+)$1	274	145	164	15.8715
g[cccqqqqqqqqccc]gg	chr6:34614437-34614690(-)$1	253	155	174	13.8791
gggggqqqqqqqqgggggg	chr4:68510357-68510602(-)$1	245	130	149	13.8135
d[cccqqqqqqqqccc]dd	chr15:93492284-93492531(+)$1	247	65	84	13.7176
eeeeeqqqqqqqqeeeee:	chr7:104691010-104691344(+)$1	334	9	28	15.8715
eeeeeqqqqqqqqeeeee8	chr13:115011360-115011619(+)$1	259	55	74	16.0908
eeeeeqqqqqqqqeeeee:	chr2:54102746-54103007(-)$1	261	238	257	15.8715
eeeeeqqqqqqqqeeeee6	chr17:56083200-56083439(-)$1	239	50	69	16.0695
eeeeeqqqqqqqqeeeee:	chr17:57917026-57917269(+)$1	243	184	203	15.8715
eeeeeqqqqqqqqeeeeeG	chr6:168289789-168290047(+)$1	258	44	63	15.9263
dddbbqqqqqqqqbb]ddd	chr4:7012259-7012516(+)$1	257	208	227	12.6613
eeeeeqqqqqqqqeeeee:	chr2:174820787-174821071(-)$1	284	249	268	15.8715
gggggqqqqqqqqgggggg	chr1:180832727-180833001(+)$1	274	3	22	13.8135
[ddddqqqqqqqqdddd]b	chr17:2376816-2377068(-)$1	252	222	241	14.2701
ddd[aqqqqqqqqa]dddd	chr1:27092597-27092844(+)$1	247	71	90	13.8723
#ddddqqqqqqqqdddd22	chr7:158473347-158473624(-)$1	277	113	132	14.1414
ddd[aqqqqqqqqa]dddd	chr3:15127322-15127589(-)$1	267	131	150	13.8723
eeeeeqqqqqqqqeeeee]	chr10:27412459-27412732(-)$1	273	171	190	16.4034
eeeeeqqqqqqqqeeeeed	chr4:119736145-119736422(-)$1	277	185	204	16.0738
eeeeeqqqqqqqqeeeee:	chr11:67947144-67947409(-)$1	265	229	248	15.8715
eeeeeqqqqqqqqeeeee:	chr20:33026510-33026762(+)$1	252	0	19	15.8715
[ddddqqqqqqqqdddd]c	chr3:197574164-197574419(+)$1	255	110	129	14.3861
eeeeeqqqqqqqqeeeee:	chr7:892188-892426(+)$1	238	74	93	15.8715
eeeeeqqqqqqqqeeeee:	chr11:120318833-120319064(+)$1	231	75	94	15.8715
[ddddqqqqqqqqdddd]=	chr1:163295710-163295972(+)$1	262	68	87	14.3331
$ddddqqqqqqqqdddd44	chr4:10076013-10076241(-)$1	228	182	201	14.1131
cddddqqqqqqqqdddd]c	chr1:183481861-183482113(+)$1	252	228	247	14.2467
eeeeeqqqqqqqqeeeee:	chr16:87764088-87764355(-)$1	267	89	108	15.8715
ddcccqqqqqqqqccc333	chr7:38268280-38268536(+)$1	256	105	124	14.1844
c[cccqqqqqqqqcccccc	chr6:30314097-30314366(+)$1	269	196	215	13.6951
eeeeeqqqqqqqqeeeeeE	chr1:247051686-247051935(-)$1	249	103	122	15.5852
eeeeeqqqqqqqqeeeee:	chr13:39588462-39588736(-)$1	274	26	45	15.8715
eeeeeqqqqqqqqeeeee]	chr1:145650382-145650632(+)$1	250	165	184	16.4034
[ddddqqqqqqqqdddd]b	chr1:46736209-46736468(+)$1	259	45	64	14.2701
eeeeeqqqqqqqqeeeeee	chr16:68323935-68324190(+)$1	255	90	109	16.0261
eeeeeqqqqqqqqeeeee]	chr5:139838012-139838266(+)$1	254	181	200	16.4034
e[cccqqqqqqqqccceee	chr6:135299759-135300051(-)$1	292	212	231	14.4584
eeeeeqqqqqqqqeeeee:	chr11:3381633-3381911(-)$1	278	78	97	15.8715
eeeeeqqqqqqqqeeeee:	chr21:44515711-44515963(-)$1	252	69	88	15.8715
eeeeeqqqqqqqqeeeee:	chr14:103934232-103934545(+)$1	313	58	77	15.8715

#otherMatches

#Seq PSSM
GGGAACUUCAGUCUUCCCC	chr9:136230631-136230895(-)$1	264	32	51	15.8715
AUUGGAAAUAACAUCAUCA	chr1:226258938-226259149(+)$1	211	67	86	13.6142
CAUGGGACCAGGACCGUAG	chr14:39795961-39796212(+)$1	251	226	245	14.2467
AUAUCCCAUGCUAGAUAUA	chr10:75527478-75527763(+)$1	285	30	49	16.4034
UUUAACAUAUGGUUUAAAU	chr7:26237349-26237596(-)$1	247	63	82	13.8135
AAUCAUUUAAUAUUGACUU	chr13:111932493-111932758(+)$1	265	38	57	13.7176
UAUCCAAACAUAAGGUAAG	chr1:246804939-246805188(+)$1	249	119	138	12.7248
AGGUUAUAUGAAAAAUCUG	chr17:45738370-45738597(+)$1	227	183	202	16.3166
GCCUGGAUGAGUACUGGUA	chr19:19767807-19768061(-)$1	254	125	144	13.7838
AAGGAUUGUGUUUUCCUUU	chr1:19514008-19514257(-)$1	249	192	211	15.8715
CUGAAAUCCCAUAUUCAGA	chr20:36718020-36718296(+)$1	276	152	171	16.3166
ACACUGGGAAAGAAGUAAC	chr3:141644261-141644490(+)$1	229	163	182	13.8316
cauuuacccuuccagaugg	chr6:147992945-147993192(+)$1	247	116	135	16.0738
GCUGCCCUAUUUAGUAGAG	chr6:168291451-168291704(+)$1	253	229	248	14.3071
CGCUGUGCUUUUCCCGUGC	chr16:258022-258303(-)$1	281	94	113	12.9872
GAGAAAAGCUGAAUUCUUC	chr2:55245313-55245565(-)$1	252	147	166	16.3166
GAUCAUUUUAUUUUGUUAU	chr6:150048508-150048756(-)$1	248	19	38	12.7507
UUUCUUUCACAGUAGAAGA	chr1:224573935-224574206(-)$1	271	100	119	16.3166
UGCCGAUGUCCCCCCGCAC	chr17:40468799-40469070(-)$1	271	177	196	13.6546
uucucccugccacgagaga	chr17:62480066-62480318(-)$1	252	79	98	13.9190
CUACAUUUUCCUUUGAGGC	chr2:210884280-210884529(+)$1	249	67	86	12.7475
ACAGCCUGGAAAUGUUAGC	chr10:7841451-7841703(+)$1	252	8	27	13.9703
AUCAUCACAGAGCAUGCCA	chr18:23632660-23632918(-)$1	258	227	246	13.9982
UUCCUGAGCGUAGAGGGAA	chr10:6150643-6150917(+)$1	274	145	164	15.8715
CGGGGGAGACCAAUUUGGA	chr6:34614437-34614690(-)$1	253	155	174	13.8791
GAAAUGUUGAAAAAUUUUG	chr4:68510357-68510602(-)$1	245	130	149	13.8135
CUUCUUUAUUGUUAGAUGU	chr15:93492284-93492531(+)$1	247	65	84	13.7176
AACUAUCUACUUUUGGUUA	chr7:104691010-104691344(+)$1	334	9	28	15.8715
CAUGUCUUAAAUUACAUGU	chr13:115011360-115011619(+)$1	259	55	74	16.0908
AAACAAGUAAGAGUGUUUA	chr2:54102746-54103007(-)$1	261	238	257	15.8715
CUUAACGUGAAAUUUAAGA	chr17:56083200-56083439(-)$1	239	50	69	16.0695
UGGCACAAAGUUAUGCCAA	chr17:57917026-57917269(+)$1	243	184	203	15.8715
UAAGUACUUGUUAACUUAG	chr6:168289789-168290047(+)$1	258	44	63	15.9263
AACCCUGUCAAAUGGCGUU	chr4:7012259-7012516(+)$1	257	208	227	12.6613
GUUCUUCCCCUUCAGAAUU	chr2:174820787-174821071(-)$1	284	249	268	15.8715
CUUUGCUUUCUUAUGGAGC	chr1:180832727-180833001(+)$1	274	3	22	13.8135
ACAGAAUAACUUAUCUGAU	chr17:2376816-2377068(-)$1	252	222	241	14.2701
GAGUCUAACCUUUGUCUCU	chr1:27092597-27092844(+)$1	247	71	90	13.8723
UAGGUUCUGAGUUACUUUC	chr7:158473347-158473624(-)$1	277	113	132	14.1414
AAGCCAUCUUUCCGACUUC	chr3:15127322-15127589(-)$1	267	131	150	13.8723
UGAUGUUCCUUUUUAUUAU	chr10:27412459-27412732(-)$1	273	171	190	16.4034
GGCUGGUCCGCCACAGCCC	chr4:119736145-119736422(-)$1	277	185	204	16.0738
UAUUUUAUAUCUUAAAUAU	chr11:67947144-67947409(-)$1	265	229	248	15.8715
AAUUCUUUUAGGUGAAUUU	chr20:33026510-33026762(+)$1	252	0	19	15.8715
GUCAGGGUUCCAGCUGAGC	chr3:197574164-197574419(+)$1	255	110	129	14.3861
GCAAGUUUUUAGUCUUGCU	chr7:892188-892426(+)$1	238	74	93	15.8715
GAAGUCUUAAUUUACUUCG	chr11:120318833-120319064(+)$1	231	75	94	15.8715
CUACUGAUCAUGUGGUAUU	chr1:163295710-163295972(+)$1	262	68	87	14.3331
UGUUGGCUGAGAACAAUCC	chr4:10076013-10076241(-)$1	228	182	201	14.1131
ACUAAAUCCCAUCUUAGUU	chr1:183481861-183482113(+)$1	252	228	247	14.2467
GUUUAUUUCAUUUUAGAUC	chr16:87764088-87764355(-)$1	267	89	108	15.8715
UCUCCACCACGUAGGAUCU	chr7:38268280-38268536(+)$1	256	105	124	14.1844
CUGGGGAGACAGGCCUGAG	chr6:30314097-30314366(+)$1	269	196	215	13.6951
UCCCUGAUUGCAGAGGGAA	chr1:247051686-247051935(-)$1	249	103	122	15.5852
UUUGUUAAAUAUUACAAAA	chr13:39588462-39588736(-)$1	274	26	45	15.8715
UUCCUUUAGCUGUAGGAAU	chr1:145650382-145650632(+)$1	250	165	184	16.4034
guagucugccauCACUAGC	chr1:46736209-46736468(+)$1	259	45	64	14.2701
AGGAAUGUGAGCUUUCCUG	chr16:68323935-68324190(+)$1	255	90	109	16.0261
UUCUGAAAAUCUGCAGGAU	chr5:139838012-139838266(+)$1	254	181	200	16.4034
UUCCUAUCACUAAAGGAUU	chr6:135299759-135300051(-)$1	292	212	231	14.4584
UGUCUAGUAAGUCGGAUAA	chr11:3381633-3381911(-)$1	278	78	97	15.8715
GGUUAACAUGUUCUAACCA	chr21:44515711-44515963(-)$1	252	69	88	15.8715
GUUAAUGAAAAGUUUAACU	chr14:103934232-103934545(+)$1	313	58	77	15.8715

#DB
(((((........))))).	chr9:136230631-136230895(-)$1	1	32	51	15.8715
..(((........)))..)	chr1:226258938-226259149(+)$1	1	67	86	13.6142
(((((........)))).)	chr14:39795961-39796212(+)$1	1	226	245	14.2467
(((((........))))).	chr10:75527478-75527763(+)$1	1	30	49	16.4034
(((((........))))))	chr7:26237349-26237596(-)$1	1	63	82	13.8135
(.(((........))).))	chr13:111932493-111932758(+)$1	1	38	57	13.7176
((.((........))))))	chr1:246804939-246805188(+)$1	1	119	138	12.7248
(((((........))))).	chr17:45738370-45738597(+)$1	1	183	202	16.3166
(((.(........).))))	chr19:19767807-19768061(-)$1	1	125	144	13.7838
(((((........))))).	chr1:19514008-19514257(-)$1	1	192	211	15.8715
(((((........))))).	chr20:36718020-36718296(+)$1	1	152	171	16.3166
..(((........)))...	chr3:141644261-141644490(+)$1	1	163	182	13.8316
(((((........)))))(	chr6:147992945-147993192(+)$1	1	116	135	16.0738
.((((........))))..	chr6:168291451-168291704(+)$1	1	229	248	14.3071
(((.(........).))))	chr16:258022-258303(-)$1	1	94	113	12.9872
(((((........))))).	chr2:55245313-55245565(-)$1	1	147	166	16.3166
((.((........))))))	chr6:150048508-150048756(-)$1	1	19	38	12.7507
(((((........))))).	chr1:224573935-224574206(-)$1	1	100	119	16.3166
(((.(........).))).	chr17:40468799-40469070(-)$1	1	177	196	13.6546
(((((........))))))	chr17:62480066-62480318(-)$1	1	79	98	13.9190
((.((........))))).	chr2:210884280-210884529(+)$1	1	67	86	12.7475
.((((........))).).	chr10:7841451-7841703(+)$1	1	8	27	13.9703
..(((........)))...	chr18:23632660-23632918(-)$1	1	227	246	13.9982
(((((........))))).	chr10:6150643-6150917(+)$1	1	145	164	15.8715
(.(((........))).))	chr6:34614437-34614690(-)$1	1	155	174	13.8791
(((((........))))))	chr4:68510357-68510602(-)$1	1	130	149	13.8135
(.(((........))).))	chr15:93492284-93492531(+)$1	1	65	84	13.7176
(((((........))))).	chr7:104691010-104691344(+)$1	1	9	28	15.8715
(((((........))))).	chr13:115011360-115011619(+)$1	1	55	74	16.0908
(((((........))))).	chr2:54102746-54103007(-)$1	1	238	257	15.8715
(((((........))))).	chr17:56083200-56083439(-)$1	1	50	69	16.0695
(((((........))))).	chr17:57917026-57917269(+)$1	1	184	203	15.8715
(((((........)))))(	chr6:168289789-168290047(+)$1	1	44	63	15.9263
(((((........)).)))	chr4:7012259-7012516(+)$1	1	208	227	12.6613
(((((........))))).	chr2:174820787-174821071(-)$1	1	249	268	15.8715
(((((........))))))	chr1:180832727-180833001(+)$1	1	3	22	13.8135
.((((........)))).)	chr17:2376816-2377068(-)$1	1	222	241	14.2701
(((.(........).))))	chr1:27092597-27092844(+)$1	1	71	90	13.8723
.((((........))))..	chr7:158473347-158473624(-)$1	1	113	132	14.1414
(((.(........).))))	chr3:15127322-15127589(-)$1	1	131	150	13.8723
(((((........))))).	chr10:27412459-27412732(-)$1	1	171	190	16.4034
(((((........)))))(	chr4:119736145-119736422(-)$1	1	185	204	16.0738
(((((........))))).	chr11:67947144-67947409(-)$1	1	229	248	15.8715
(((((........))))).	chr20:33026510-33026762(+)$1	1	0	19	15.8715
.((((........)))).)	chr3:197574164-197574419(+)$1	1	110	129	14.3861
(((((........))))).	chr7:892188-892426(+)$1	1	74	93	15.8715
(((((........))))).	chr11:120318833-120319064(+)$1	1	75	94	15.8715
.((((........)))).)	chr1:163295710-163295972(+)$1	1	68	87	14.3331
.((((........))))..	chr4:10076013-10076241(-)$1	1	182	201	14.1131
(((((........)))).)	chr1:183481861-183482113(+)$1	1	228	247	14.2467
(((((........))))).	chr16:87764088-87764355(-)$1	1	89	108	15.8715
(((((........)))...	chr7:38268280-38268536(+)$1	1	105	124	14.1844
(.(((........))))))	chr6:30314097-30314366(+)$1	1	196	215	13.6951
(((((........))))))	chr1:247051686-247051935(-)$1	1	103	122	15.5852
(((((........))))).	chr13:39588462-39588736(-)$1	1	26	45	15.8715
(((((........))))).	chr1:145650382-145650632(+)$1	1	165	184	16.4034
.((((........)))).)	chr1:46736209-46736468(+)$1	1	45	64	14.2701
(((((........)))))(	chr16:68323935-68324190(+)$1	1	90	109	16.0261
(((((........))))).	chr5:139838012-139838266(+)$1	1	181	200	16.4034
(.(((........))))))	chr6:135299759-135300051(-)$1	1	212	231	14.4584
(((((........))))).	chr11:3381633-3381911(-)$1	1	78	97	15.8715
(((((........))))).	chr21:44515711-44515963(-)$1	1	69	88	15.8715
(((((........))))).	chr14:103934232-103934545(+)$1	1	58	77	15.8715

#PSSM
e : 0.50	d : 0.11	g : 0.09	c : 0.07	[ : 0.07	! : 0.03	" : 0.03	f : 0.01	= : 0.01	# : 0.01	$ : 0.01	
e : 0.49	d : 0.22	g : 0.07	[ : 0.07	" : 0.03	c : 0.03	! : 0.01	f : 0.01	= : 0.01	a : 0.01	
e : 0.49	d : 0.19	c : 0.17	g : 0.06	[ : 0.04	f : 0.01	= : 0.01	
e : 0.49	c : 0.15	d : 0.14	[ : 0.07	b : 0.06	g : 0.04	= : 0.01	
e : 0.49	c : 0.15	d : 0.14	a : 0.07	b : 0.06	g : 0.04	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.49	c : 0.15	d : 0.14	a : 0.07	b : 0.06	g : 0.04	= : 0.01	
e : 0.49	c : 0.15	d : 0.14	] : 0.07	b : 0.06	g : 0.04	= : 0.01	
e : 0.49	c : 0.19	d : 0.19	g : 0.07	f : 0.01	= : 0.01	] : 0.01	
e : 0.50	d : 0.20	g : 0.07	] : 0.06	c : 0.04	3 : 0.03	2 : 0.01	4 : 0.01	f : 0.01	= : 0.01	
e : 0.50	] : 0.09	g : 0.09	d : 0.09	2 : 0.04	c : 0.04	4 : 0.03	3 : 0.03	f : 0.01	= : 0.01	a : 0.01	
: : 0.25	d : 0.12	2 : 0.11	g : 0.09	c : 0.07	] : 0.07	3 : 0.04	4 : 0.03	= : 0.03	b : 0.03	e : 0.03	f : 0.01	8 : 0.01	6 : 0.01	G : 0.01	E : 0.01	

#score	938.4676168367928
#seq	63
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_UTR_m1_run2.txt

#BEAR
!ffffff[bb[ccc!!bboooooobb22cccbbffffff]	chr9:116999160-116999406(+)$1	246	133	173	12.3688
##ccc[ccc[ccc[ddddoooooodddd]cccccc]ccc4	chr2:220097688-220097939(+)$1	251	65	105	15.3619
ddiiiiiiiii"""a[eeeeellleeeeea]iiiiiiiii	chr2:242611506-242611764(+)$1	258	187	227	13.8029
dd[bb[ccc[dddd!!bboooooobb22ddddccc]bbdd	chr14:74758812-74759161(-)$1	349	301	341	12.5872
"""ggggggg[bb####bbnnnnnbb4444bbggggggg]	chr11:72424042-72424287(-)$1	245	36	76	13.2236
iiiii!!bb"""a[ddddnnnnndddd]abb22iiiiiii	chr14:23444177-23444430(-)$1	253	148	188	13.4946
fffff[a[eeeee!!cccooooooccceeeee]a]fffff	chr16:69419219-69419557(-)$1	338	246	286	15.0126
eeee!!hhhhhhhh[cccooooooccc]hhhhhhhh333e	chr6:167365906-167366158(-)$1	252	120	160	13.7166
"""ccc[eeeee!!ccccccmmmmccc]ccceeeee333c	chr3:48668326-48668573(-)$1	247	85	125	12.8978
ccc"""dddd####ddddooooooddddddddccceeeee	chr14:24586772-24587022(+)$1	250	1	41	13.9193
cc===========[ddddoooooodddd===========]	chr5:180235489-180235858(-)$1	369	233	273	19.1406
ddd[================mmmm================	chr22:39111801-39112078(+)$1	277	33	73	16.1008
============!!ggggggglllggggggg333======	chr16:11991587-11991839(-)$1	252	38	78	15.1370
[iiiiiiiii[bb!!cccmmmmccc4444bb]iiiiiiii	chr22:42296163-42296466(+)$1	303	82	122	14.9074
eeeeeeeeee==========mmmm==========]eeeee	chr16:72129935-72130177(+)$1	242	156	196	12.3286
b:::==========[ddddnnnnndddd22==========	chr19:55899441-55899721(+)$1	280	50	90	13.3787
gggggg!!cccccc[aooooooa]ccc22ccc]ggggggg	chr14:74761711-74761994(-)$1	283	91	131	15.0285
bccc[ccc[eeeee[cccnnnnnccc22eeeee]ccc]cc	chr5:175955980-175956221(-)$1	241	91	131	12.9637
cciiiiiiiii####eeeeemmmmeeeeeiiiiiiiii]c	chr3:185638755-185639088(-)$1	333	105	145	13.9474
c:============[cccooooooccc]============	chr2:122125252-122125550(-)$1	298	158	198	19.9777
fhhhhhhhheeeee[cccooooooccceeeee333hhhhh	chr1:156288674-156288902(-)$1	228	127	167	13.8615
bb[a!!ggggggg!!ccclllccc22ggggggg4444a]b	chr11:93466415-93466675(-)$1	260	73	113	12.5621
:ccc!!ccc[bb!!ddddoooooodddd22bb]ccc22cc	chr3:184103732-184103978(+)$1	246	34	74	14.2877
fffa[dddd[bb[a[cccoooooocccabb]dddd]a]ff	chr3:184106271-184106573(+)$1	302	217	257	14.0593
:ccc####ggggggg!!cccmmmmccc333gggggggccc	chr16:89623201-89623415(+)$1	214	78	118	13.3347
g[a!!ffffff[a!!cccooooooccc22affffff4444	chr16:30662835-30663054(+)$1	219	146	186	15.7188
d!!=========="""bbpppppppbb22==========d	chr8:37595284-37595707(+)$1	423	204	244	13.1805
::::ccca!!dddd[cccooooooccc333dddd22a]cc	chr17:73227275-73227580(+)$1	305	132	172	12.4711
:iiiiiiiii####ddddoooooodddd333iiiiiiiii	chr17:17716161-17716421(-)$1	260	12	52	17.5908
::ccc[gggggggeeeeeooooooeeeee333ggggggg]	chr14:24612588-24612852(-)$1	264	41	81	13.9813
ccc[ccca!!eeeeecccooooooccc]eeeee22a]ccc	chr7:150066832-150067136(+)$1	304	17	57	15.6172
iii"""===========[bbmmmmbb22===========i	chr5:6632732-6632980(-)$1	248	87	127	15.2960
bbccceeeeedddd[cccooooooccc]dddd333eeeee	chr17:79864185-79864455(-)$1	270	1	41	14.5665
hhhhhh!!ffffff[cccoooooocccffffff4444hhh	chr12:120638660-120638949(-)$1	289	127	167	13.3709
fff"""bbdddd!!bb[aooooooa]bb22dddd]bb333	chr9:134370979-134371301(+)$1	322	82	122	13.1310
[bb$$$$$eeeeebbcccooooooccc]bb4444eeeee3	chr17:37902872-37903141(+)$1	269	135	175	13.5796
###dddd===========nnnnn===========22dddd	chr1:24975185-24975472(+)$1	287	68	108	13.4727
iiiiccc!!a[bbccc[ammmma]ccc]bba22ccc]iii	chr17:27420241-27420462(-)$1	221	159	199	12.4784
d####==========[bboooooobb]==========333	chr11:800954-801196(-)$1	242	124	164	18.4703
gggg==============qqqqqqqq==============	chr3:47437533-47437806(+)$1	273	84	124	14.4743
Fggggggg"""ccc[cccmmmmccc]ccc]ggggggg:cc	chr12:53692917-53693218(+)$1	301	240	280	11.7011
ggggg"""eeeee[bb[aooooooa]bb22eeeee]gggg	chr20:62324056-62324294(+)$1	238	103	143	14.5719
==========[eeeee[annnnna]eeeee==========	chr3:48670936-48671189(-)$1	253	94	134	15.3058
:ggggggg!!bbffffffooooooffffff]bb22ggggg	chr8:19687866-19688097(+)$1	231	156	196	12.4614
:gggggggdddd[ddddoooooodddd]dddd]ggggggg	chr12:133226198-133226468(-)$1	270	23	63	13.2882
eee$$$$$dddd!!ddddoooooodddd22dddd4444ee	chr2:65301259-65301558(+)$1	299	80	120	13.2485
EEE::==========cccooooooccc4444=========	chr17:79865346-79865594(-)$1	248	165	205	15.2285
d===========[cccqqqqqqqqccc22===========	chr3:8672462-8672730(-)$1	268	156	196	14.7195
""dddd==========[bboooooobb]==========55	chr1:45278870-45279196(+)$1	326	7	47	14.9163
ca=========="""ddddllldddd==========]a]c	chr16:89858788-89859027(-)$1	239	122	162	16.0614
cccc[a[eeeee"""cccmmmmccc4444eeeee]a]ccc	chr11:72424092-72424307(-)$1	215	122	162	13.1292
d==========####acccnnnnnccc]a4444=======	chr1:8075622-8075890(-)$1	268	48	88	17.2869
iiiiiiiii[cccxxxxxxxxxxxxxxxccciiiiiiiii	chr10:124187822-124188076(+)$1	254	45	85	12.2114

#otherMatches

#Seq PSSM
CGGGGGAAGCCAGGGCCUCUGGUAAGUACCUGCUCCUCCA	chr9:116999160-116999406(+)$1	246	133	173	12.3688
cucagugaaugcaacagauAUGUUUCUGAUGCUUCUCUGU	chr2:220097688-220097939(+)$1	251	65	105	15.3619
GGGGUGGCACCUGUGAGAGCCUGGGGCUCCUGGUGCCGCU	chr2:242611506-242611764(+)$1	258	187	227	13.8029
CCAGGCACAUGUAAGUUCACAGUCGAUGUUGCUGUUCCGG	chr14:74758812-74759161(-)$1	349	301	341	12.5872
GGGGGCCCCAGCCAGAGUGAUGACCAAGAAGGUGGGGCCA	chr11:72424042-72424287(-)$1	245	36	76	13.2236
CAGGCUGUUUCCGAUGCAUUGUUUGCAACAAGUGCCUGGA	chr14:23444177-23444430(-)$1	253	148	188	13.4946
AAGAAGGGGAAAAUUUAGGUAUGGCUAUUUUUGUGUUCUU	chr16:69419219-69419557(-)$1	338	246	286	15.0126
AGUGACAACCAUGAGUGGAAAAAACUAAUUAUGGUUCAGC	chr6:167365906-167366158(-)$1	252	120	160	13.7166
AUUGCCAUCUCACUGGGGAAGAUCUUCGCCCUGAGGCACG	chr3:48668326-48668573(-)$1	247	85	125	12.8978
UCCAUUUCUAUAACAAGAGCAAUAUCUUUGGAGGAGGGGG	chr14:24586772-24587022(+)$1	250	1	41	13.9193
CACUUAAUGUCUUGCUGUGCCUGUGCAGAAGGUGUUGAGC	chr5:180235489-180235858(-)$1	369	233	273	19.1406
GGGUUCCUGGCUGGCUGGUUGGCAGGCUGGUUGGUCAGGA	chr22:39111801-39112078(+)$1	277	33	73	16.1008
AUAUGGUGUGUAAAGCUAGAUACUGUUUGGUAAAUAUAUA	chr16:11991587-11991839(-)$1	252	38	78	15.1370
GGCGUGGCAGUCACUGGCUUGGGCCCCUCUGCCUGUCACG	chr22:42296163-42296466(+)$1	303	82	122	14.9074
AUUGGAAGGCACUGAUCUGGACUGUCAGGUUGGUGGUCUU	chr16:72129935-72130177(+)$1	242	156	196	12.3286
AAUAUGGGCUGGAGAGGGAUGGAUUCUUGCUUUCAGCCUA	chr19:55899441-55899721(+)$1	280	50	90	13.3787
AGGUUCAAGCACAUGCAGAUUCGGGUGAAUGCGGAGCCUG	chr14:74761711-74761994(-)$1	283	91	131	15.0285
GGCUGGUGAGAGCAACGCCUGACGUGCAUGUUCCCACAGG	chr5:175955980-175956221(-)$1	241	91	131	12.9637
CUUCAUAGUGGCAGCUCUCGCCGUCGGGAUUACUAUGACA	chr3:185638755-185639088(-)$1	333	105	145	13.9474
GGCGCUGCCUCCCCUGCCACUGAGGGCCGGGGGGGUAGUG	chr2:122125252-122125550(-)$1	298	158	198	19.9777
UUGCGUGGAGUCAUGAUUAACAAGGAUGUGACCCAUCCAC	chr1:156288674-156288902(-)$1	228	127	167	13.8615
ACGUUAUGAAAAACCAGAUAAUCUACUUUUUUACCUUAGG	chr11:93466415-93466675(-)$1	260	73	113	12.5621
ugaacuggggacaguaggcucagcccuAAAGUGCCUUAUU	chr3:184103732-184103978(+)$1	246	34	74	14.2877
CCCCUUUUGGAGAGAUGAGCUGUAUCACCUGCAGAUGUGG	chr3:184106271-184106573(+)$1	302	217	257	14.0593
GCCUGUUCUUUCUAGCUGGCAAACGCCCUUCUGGAAAAGG	chr16:89623201-89623415(+)$1	214	78	118	13.3347
GACUCCAGGUGAGAGCGUACCCGGGCGGCCCGCCUGUCUU	chr16:30662835-30663054(+)$1	219	146	186	15.7188
GCAUCUCUCUUCUCAGCUGUGCACAAGAUAGAAGAGGGAC	chr8:37595284-37595707(+)$1	423	204	244	13.1805
UUCUUGCCUUGGUGUCUGAAUCUGCAGCAUCGCCCUGAGC	chr17:73227275-73227580(+)$1	305	132	172	12.4711
CUUUCACAAGGAAUCAGUGGGGUGACUGUCAUUUGUGGGA	chr17:17716161-17716421(-)$1	260	12	52	17.5908
GACCUGAGGGCCUUCUAUGUGAGUGUGGAGUAAGGCUUUA	chr14:24612588-24612852(-)$1	264	41	81	13.9813
GCUACCGGAGUGUGGGCCGAAGCAGGCGCUGCAGCCGCGG	chr7:150066832-150067136(+)$1	304	17	57	15.6172
GUAGACGUCUCUUUCCUUCCUCAGGGCUGGGAAGGAGGCU	chr5:6632732-6632980(-)$1	248	87	127	15.2960
CCCAUCCCGACUGCUUCUUAACCUGGGUGCAGACAUCGGG	chr17:79864185-79864455(-)$1	270	1	41	14.5665
GGCCUUUGGGAACAUGGAGUCCUAUUCUGUUCCGCCUGGG	chr12:120638660-120638949(-)$1	289	127	167	13.3709
AACUAUGUAUCCAAACACGUUUCAGCGUCAGGGUCACUUU	chr9:134370979-134371301(+)$1	322	82	122	13.1310
AGGAGGAGGGCCGCCUGUACUUCAGCAUGGAUGAUGGCCA	chr17:37902872-37903141(+)$1	269	135	175	13.5796
AAAAAAUACUAAUUUAAAUGAGUUUUAgguugguugauuu	chr1:24975185-24975472(+)$1	287	68	108	13.4727
CCUGCCCAUGCGGCCUGAGGAGUGGGGAUCCUAGGGAUGG	chr17:27420241-27420462(-)$1	221	159	199	12.4784
CUGCAGCCACCUGGGAUGACAUCACAGCUCAGGUGGUCCU	chr11:800954-801196(-)$1	242	124	164	18.4703
CUUCUCUCUCUGUAGUUUGUCCUGAAGAAUUAUGGAGAGA	chr3:47437533-47437806(+)$1	273	84	124	14.4743
CACCCUUUGGGCGUGGCUUCCUGGUGAUGGGAAGGGUCUU	chr12:53692917-53693218(+)$1	301	240	280	11.7011
GGAGCCCGUGGCUGGUGCACAGACGGACAGGGCCAAGCUC	chr20:62324056-62324294(+)$1	238	103	143	14.5719
UGUGUCUCUCUGGUCUUGCCACCCCAGACCGAGGGACACA	chr3:48670936-48671189(-)$1	253	94	134	15.3058
CCAGGGAGAGCUGGGAGUUGCUCUAUUCCCUAGAAUUCCU	chr8:19687866-19688097(+)$1	231	156	196	12.4614
CCGAGGCCAAGUGCUCCUGACAUGGAGGACUUCGGCCUCG	chr12:133226198-133226468(-)$1	270	23	63	13.2882
GAUAUUUUUAGCCUUUUGAUAACAUAAAUAGCUGUUCGAU	chr2:65301259-65301558(+)$1	299	80	120	13.2485
GUGAGUGCGGCUGUGCAGGGAGAGCUGAGCACGCAGCUGC	chr17:79865346-79865594(-)$1	248	165	205	15.2285
CUCUGGGACAUCAAGGUUCAAGGUCCUCCGAUGUUUCAGG	chr3:8672462-8672730(-)$1	268	156	196	14.7195
CAAGCUCUGCGUGGACGAGGCUGAACUGGUCCGCGCGGCC	chr1:45278870-45279196(+)$1	326	7	47	14.9163
CCUCUGCUCACCUCACUGUACCGCAGGGUGAGUGGAUGUG	chr16:89858788-89859027(-)$1	239	122	162	16.0614
UGUUGUGGGGGUGCCCAGCUGCCUGUCAGACCCUGAGGAC	chr11:72424092-72424307(-)$1	215	122	162	13.1292
UCCUCUGUUAGCUUUGCUGUAAUUUAGACUGUCCUAAUGG	chr1:8075622-8075890(-)$1	268	48	88	17.2869
UGGGCUCUCACGCAAACGUGCCUUCUUAGUGGAGGGCCCA	chr10:124187822-124188076(+)$1	254	45	85	12.2114

#DB
.((((((.((.(((..((......))..))))))))))).	chr9:116999160-116999406(+)$1	1	133	173	12.3688
..(((.(((.(((.((((......)))).)))))).))).	chr2:220097688-220097939(+)$1	1	65	105	15.3619
))(((((((((...(.(((((...)))))).)))))))))	chr2:242611506-242611764(+)$1	1	187	227	13.8029
((.((.(((.((((..((......))..))))))).))))	chr14:74758812-74759161(-)$1	1	301	341	12.5872
...(((((((.((....((.....))....))))))))).	chr11:72424042-72424287(-)$1	1	36	76	13.2236
(((((..((...(.((((.....)))).)))..)))))))	chr14:23444177-23444430(-)$1	1	148	188	13.4946
(((((.(.(((((..(((......)))))))).).)))))	chr16:69419219-69419557(-)$1	1	246	286	15.0126
((((..((((((((.(((......))).))))))))...)	chr6:167365906-167366158(-)$1	1	120	160	13.7166
...(((.(((((..((((((....))).))))))))...)	chr3:48668326-48668573(-)$1	1	85	125	12.8978
(((...((((....((((......)))))))))))(((((	chr14:24586772-24587022(+)$1	1	1	41	13.9193
(((((((((((((.((((......))))))))))))))).	chr5:180235489-180235858(-)$1	1	233	273	19.1406
(((.((((((((((((((((....))))))))))))))))	chr22:39111801-39112078(+)$1	1	33	73	16.1008
((((((((((((..(((((((...)))))))...))))))	chr16:11991587-11991839(-)$1	1	38	78	15.1370
.(((((((((.((..(((....)))....)).))))))))	chr22:42296163-42296466(+)$1	1	82	122	14.9074
)))))(((((((((((((((....)))))))))).)))))	chr16:72129935-72130177(+)$1	1	156	196	12.3286
)...((((((((((.((((.....))))..))))))))))	chr19:55899441-55899721(+)$1	1	50	90	13.3787
((((((..((((((.(......).)))..))).)))))))	chr14:74761711-74761994(-)$1	1	91	131	15.0285
((((.(((.(((((.(((.....)))..))))).))).))	chr5:175955980-175956221(-)$1	1	91	131	12.9637
(((((((((((....(((((....)))))))))))))).)	chr3:185638755-185639088(-)$1	1	105	145	13.9474
).((((((((((((.(((......))).))))))))))))	chr2:122125252-122125550(-)$1	1	158	198	19.9777
)(((((((((((((.(((......))))))))...)))))	chr1:156288674-156288902(-)$1	1	127	167	13.8615
((.(..(((((((..(((...)))..)))))))....).)	chr11:93466415-93466675(-)$1	1	73	113	12.5621
.(((..(((.((..((((......))))..)).)))..))	chr3:184103732-184103978(+)$1	1	34	74	14.2877
((((.((((.((.(.(((......)))))).)))).).))	chr3:184106271-184106573(+)$1	1	217	257	14.0593
.(((....(((((((..(((....)))...))))))))))	chr16:89623201-89623415(+)$1	1	78	118	13.3347
(.(..((((((.(..(((......)))..)))))))....	chr16:30662835-30663054(+)$1	1	146	186	15.7188
(..((((((((((...((.......))..)))))))))))	chr8:37595284-37595707(+)$1	1	204	244	13.1805
....((((..((((.(((......)))...))))..).))	chr17:73227275-73227580(+)$1	1	132	172	12.4711
.(((((((((....((((......))))...)))))))))	chr17:17716161-17716421(-)$1	1	12	52	17.5908
..(((.((((((((((((......)))))...))))))).	chr14:24612588-24612852(-)$1	1	41	81	13.9813
(((.((((..((((((((......))).)))))..).)))	chr7:150066832-150067136(+)$1	1	17	57	15.6172
(((...(((((((((((.((....))..))))))))))))	chr5:6632732-6632980(-)$1	1	87	127	15.2960
((((((((((((((.(((......))).))))...)))))	chr17:79864185-79864455(-)$1	1	1	41	14.5665
((((((..((((((.(((......)))))))))....)))	chr12:120638660-120638949(-)$1	1	127	167	13.3709
(((...((((((..((.(......).))..)))).))...	chr9:134370979-134371301(+)$1	1	82	122	13.1310
.((.....((((((((((......))).))....))))).	chr17:37902872-37903141(+)$1	1	135	175	13.5796
...(((((((((((((((.....)))))))))))..))))	chr1:24975185-24975472(+)$1	1	68	108	13.4727
(((((((..(.(((((.(....).))).)))..))).)))	chr17:27420241-27420462(-)$1	1	159	199	12.4784
(....((((((((((.((......)).))))))))))...	chr11:800954-801196(-)$1	1	124	164	18.4703
((((((((((((((((((........))))))))))))))	chr3:47437533-47437806(+)$1	1	84	124	14.4743
)(((((((...(((.(((....))).))).))))))).((	chr12:53692917-53693218(+)$1	1	240	280	11.7011
(((((...(((((.((.(......).))..))))).))))	chr20:62324056-62324294(+)$1	1	103	143	14.5719
((((((((((.(((((.(.....).)))))))))))))))	chr3:48670936-48671189(-)$1	1	94	134	15.3058
.(((((((..((((((((......)))))).))..)))))	chr8:19687866-19688097(+)$1	1	156	196	12.4614
.(((((((((((.((((......)))).)))).)))))))	chr12:133226198-133226468(-)$1	1	23	63	13.2882
(((.....((((..((((......))))..))))....))	chr2:65301259-65301558(+)$1	1	80	120	13.2485
(((..(((((((((((((......)))....)))))))))	chr17:79865346-79865594(-)$1	1	165	205	15.2285
)(((((((((((.(((........)))..)))))))))))	chr3:8672462-8672730(-)$1	1	156	196	14.7195
..((((((((((((((.((......)).))))))))))..	chr1:45278870-45279196(+)$1	1	7	47	14.9163
((((((((((((...((((...)))))))))))))).).)	chr16:89858788-89859027(-)$1	1	122	162	16.0614
((((.(.(((((...(((....)))....))))).).)))	chr11:72424092-72424307(-)$1	1	122	162	13.1292
(((((((((((....((((.....))).)....)))))))	chr1:8075622-8075890(-)$1	1	48	88	17.2869
(((((((((.(((...............))))))))))))	chr10:124187822-124188076(+)$1	1	45	85	12.2114

#PSSM
d : 0.13	c : 0.13	: : 0.13	i : 0.07	f : 0.07	b : 0.07	g : 0.07	" : 0.05	e : 0.05	# : 0.03	= : 0.03	[ : 0.03	! : 0.01	h : 0.01	F : 0.01	E : 0.01	
c : 0.15	i : 0.11	g : 0.11	f : 0.07	= : 0.07	: : 0.07	# : 0.05	d : 0.05	" : 0.05	e : 0.05	b : 0.05	h : 0.03	[ : 0.01	! : 0.01	E : 0.01	a : 0.01	
c : 0.16	i : 0.15	= : 0.13	g : 0.11	f : 0.07	e : 0.05	[ : 0.03	" : 0.03	d : 0.03	: : 0.03	h : 0.03	# : 0.03	a : 0.01	! : 0.01	b : 0.01	E : 0.01	
c : 0.15	= : 0.15	i : 0.13	g : 0.13	" : 0.05	: : 0.05	f : 0.03	e : 0.03	[ : 0.03	h : 0.03	a : 0.03	$ : 0.03	d : 0.03	b : 0.01	! : 0.01	# : 0.01	
= : 0.20	c : 0.13	i : 0.11	g : 0.11	! : 0.07	" : 0.05	[ : 0.05	f : 0.03	h : 0.03	# : 0.03	$ : 0.03	d : 0.03	b : 0.01	e : 0.01	: : 0.01	
= : 0.24	i : 0.09	g : 0.09	c : 0.09	[ : 0.07	! : 0.07	" : 0.07	d : 0.05	f : 0.03	e : 0.03	h : 0.03	$ : 0.03	# : 0.01	a : 0.01	
= : 0.28	c : 0.13	g : 0.11	i : 0.09	! : 0.05	d : 0.05	f : 0.03	h : 0.03	[ : 0.03	e : 0.03	$ : 0.03	a : 0.01	# : 0.01	b : 0.01	" : 0.01	
= : 0.30	g : 0.11	i : 0.09	c : 0.07	e : 0.07	! : 0.05	[ : 0.03	b : 0.03	h : 0.03	d : 0.03	a : 0.03	$ : 0.03	# : 0.01	f : 0.01	" : 0.01	
= : 0.30	e : 0.13	i : 0.09	d : 0.09	c : 0.07	g : 0.07	! : 0.07	b : 0.03	h : 0.03	f : 0.03	[ : 0.01	" : 0.01	
= : 0.30	e : 0.16	[ : 0.09	i : 0.07	g : 0.07	d : 0.07	! : 0.05	" : 0.03	f : 0.03	b : 0.01	h : 0.01	c : 0.01	a : 0.01	
= : 0.30	e : 0.15	d : 0.11	[ : 0.09	c : 0.05	g : 0.05	b : 0.05	i : 0.03	" : 0.03	# : 0.03	f : 0.03	h : 0.01	
= : 0.28	e : 0.16	d : 0.11	b : 0.11	c : 0.09	# : 0.07	g : 0.05	" : 0.03	h : 0.01	[ : 0.01	f : 0.01	
= : 0.22	e : 0.13	c : 0.09	! : 0.09	# : 0.07	" : 0.05	d : 0.05	b : 0.05	g : 0.05	[ : 0.05	a : 0.03	f : 0.03	h : 0.01	
= : 0.18	! : 0.16	c : 0.09	# : 0.09	e : 0.09	[ : 0.07	" : 0.07	d : 0.07	f : 0.03	h : 0.01	a : 0.01	g : 0.01	b : 0.01	x : 0.01	
[ : 0.20	d : 0.15	= : 0.15	! : 0.11	# : 0.05	c : 0.05	" : 0.05	e : 0.05	b : 0.05	g : 0.03	a : 0.01	f : 0.01	x : 0.01	
c : 0.37	d : 0.18	= : 0.11	! : 0.05	e : 0.05	[ : 0.03	a : 0.03	b : 0.03	# : 0.01	g : 0.01	" : 0.01	f : 0.01	x : 0.01	
c : 0.35	d : 0.18	= : 0.09	[ : 0.09	b : 0.07	e : 0.05	# : 0.01	g : 0.01	o : 0.01	! : 0.01	f : 0.01	q : 0.01	x : 0.01	
c : 0.37	d : 0.16	b : 0.11	= : 0.07	a : 0.07	e : 0.05	o : 0.03	g : 0.01	[ : 0.01	f : 0.01	q : 0.01	x : 0.01	
o : 0.50	n : 0.07	m : 0.07	b : 0.05	c : 0.05	e : 0.03	= : 0.03	d : 0.03	q : 0.03	g : 0.01	l : 0.01	p : 0.01	x : 0.01	
o : 0.52	n : 0.13	m : 0.07	e : 0.03	c : 0.03	= : 0.03	l : 0.03	q : 0.03	g : 0.01	p : 0.01	b : 0.01	x : 0.01	
o : 0.52	m : 0.18	n : 0.13	l : 0.03	q : 0.03	e : 0.01	g : 0.01	p : 0.01	x : 0.01	
o : 0.52	m : 0.18	n : 0.13	l : 0.05	q : 0.03	c : 0.01	p : 0.01	x : 0.01	
o : 0.50	n : 0.13	m : 0.11	c : 0.07	l : 0.03	a : 0.03	q : 0.03	p : 0.01	d : 0.01	x : 0.01	
o : 0.49	m : 0.11	c : 0.09	n : 0.05	d : 0.05	l : 0.03	] : 0.03	q : 0.03	p : 0.01	= : 0.01	a : 0.01	x : 0.01	
c : 0.41	d : 0.18	b : 0.09	e : 0.05	= : 0.05	a : 0.03	g : 0.01	2 : 0.01	p : 0.01	q : 0.01	] : 0.01	f : 0.01	o : 0.01	x : 0.01	
c : 0.35	d : 0.18	b : 0.13	e : 0.07	= : 0.05	] : 0.05	4 : 0.03	g : 0.01	2 : 0.01	q : 0.01	f : 0.01	x : 0.01	
c : 0.35	d : 0.16	= : 0.09	2 : 0.07	e : 0.07	b : 0.07	4 : 0.05	g : 0.03	] : 0.01	f : 0.01	x : 0.01	
] : 0.20	2 : 0.15	d : 0.13	e : 0.11	= : 0.11	4 : 0.07	g : 0.03	3 : 0.03	f : 0.03	b : 0.03	a : 0.01	c : 0.01	x : 0.01	
= : 0.18	2 : 0.16	e : 0.15	c : 0.07	d : 0.07	4 : 0.07	b : 0.05	3 : 0.05	a : 0.03	g : 0.03	f : 0.03	] : 0.01	h : 0.01	
= : 0.22	e : 0.11	c : 0.09	b : 0.09	2 : 0.09	d : 0.07	3 : 0.07	4 : 0.05	a : 0.03	g : 0.03	f : 0.03	h : 0.01	i : 0.01	] : 0.01	
= : 0.26	d : 0.13	e : 0.11	c : 0.09	b : 0.07	g : 0.07	] : 0.05	4 : 0.05	f : 0.03	3 : 0.03	h : 0.01	i : 0.01	a : 0.01	
= : 0.28	d : 0.15	e : 0.13	b : 0.07	i : 0.07	g : 0.05	c : 0.03	2 : 0.03	3 : 0.03	f : 0.03	4 : 0.03	h : 0.01	] : 0.01	
= : 0.28	i : 0.09	g : 0.09	e : 0.09	] : 0.07	d : 0.07	c : 0.05	3 : 0.05	b : 0.03	2 : 0.03	f : 0.03	4 : 0.03	h : 0.01	
= : 0.30	i : 0.11	g : 0.11	c : 0.09	d : 0.07	e : 0.05	3 : 0.05	4 : 0.05	f : 0.03	2 : 0.03	a : 0.01	h : 0.01	] : 0.01	
= : 0.28	c : 0.11	i : 0.11	g : 0.11	] : 0.07	2 : 0.07	e : 0.05	4 : 0.05	f : 0.03	3 : 0.03	h : 0.01	d : 0.01	
= : 0.28	g : 0.13	i : 0.11	e : 0.09	] : 0.07	f : 0.05	c : 0.05	4 : 0.05	h : 0.03	2 : 0.03	a : 0.03	b : 0.01	
= : 0.26	g : 0.15	i : 0.11	e : 0.07	4 : 0.07	] : 0.07	f : 0.03	c : 0.03	b : 0.03	3 : 0.03	a : 0.03	h : 0.01	2 : 0.01	d : 0.01	
= : 0.24	i : 0.13	g : 0.11	c : 0.07	3 : 0.07	e : 0.07	] : 0.05	f : 0.03	h : 0.03	a : 0.03	4 : 0.03	b : 0.01	2 : 0.01	d : 0.01	: : 0.01	
= : 0.22	c : 0.15	i : 0.11	g : 0.11	e : 0.09	3 : 0.07	f : 0.05	] : 0.05	d : 0.03	h : 0.03	4 : 0.01	5 : 0.01	
c : 0.18	= : 0.16	i : 0.13	e : 0.09	] : 0.07	g : 0.07	d : 0.05	3 : 0.05	4 : 0.03	f : 0.03	h : 0.03	b : 0.01	5 : 0.01	

#score	758.9328446989316
#seq	53
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_transcript_m1_run1.txt

#BEAR
eeeewwwwwwwwwwwwwweeeee	chr5:138643561-138643815(+)$1	254	125	148	22.8386
$ddddvvvvvvvvvvvvvdddd8	chr3:9489456-9489770(+)$1	314	215	238	23.1903
gggggwwwwwwwwwwwwwwgggg	chr14:24607303-24607543(+)$1	240	27	50	23.1023
gggggwwwwwwwwwwwwwwgggg	chr4:83348500-83348763(-)$1	263	79	102	23.1023
dfffffftttttttttttfffff	chr2:62934099-62934469(+)$1	370	215	238	20.8272
hhhhhvvvvvvvvvvvvvhhhhh	chr1:16893568-16893822(-)$1	254	201	224	22.6575
fffffftttttttttttffffff	chr14:39648309-39648530(+)$1	221	4	27	21.1021
eee[ccctttttttttttccc]e	chr8:17819442-17819659(+)$1	217	182	205	21.6923
###bbvvvvvvvvvvvvvbbfff	chr2:216292884-216293104(-)$1	220	101	124	23.4663
dd[ddddtttttttttttddddd	chr17:27420237-27420531(-)$1	294	159	182	20.8146
eeeeevvvvvvvvvvvvveeeee	chr12:104340515-104340740(+)$1	225	81	104	24.5968
:ddddwwwwwwwwwwwwwwdddd	chr9:136905053-136905381(-)$1	328	123	146	21.3898
eeeeevvvvvvvvvvvvveeeee	chr2:21239211-21239447(-)$1	236	91	114	24.5968
g!!awwwwwwwwwwwwwwa22gg	chr11:35747405-35747767(+)$1	362	332	355	22.2156
###bbvvvvvvvvvvvvvbbhhh	chr2:216292822-216293041(-)$1	219	38	61	23.1511
eeeeevvvvvvvvvvvvveeeee	chr12:104340504-104340715(+)$1	211	92	115	24.5968
gggggtttttttttttggggggg	chr8:42798359-42798714(+)$1	355	30	53	20.6420
iiiiiiuuuuuuuuuuuuiiiii	chr16:89556621-89556948(-)$1	327	120	143	23.0508
%cccyyyyyyyyyyyyyyyyccc	chr5:79946921-79947194(-)$1	273	170	193	18.9843
:ddddwwwwwwwwwwwwwwdddd	chr19:6697671-6697901(-)$1	230	199	222	21.3898
gggggwwwwwwwwwwwwwwgggg	chr2:167162931-167163207(-)$1	276	119	142	23.1023
$ddddvvvvvvvvvvvvvdddd6	chr2:71653750-71654011(+)$1	261	134	157	23.1901
====yyyyyyyyyyyyyyyy===	chr11:68205912-68206157(+)$1	245	69	92	20.0767
!ddddvvvvvvvvvvvvvdddd5	chr11:130011295-130011516(+)$1	221	165	188	23.1203
ff!!bbuuuuuuuuuuuubb22f	chr17:57760355-57760633(+)$1	278	20	43	21.8828
dd[bbvvvvvvvvvvvvvbb]dd	chr6:7583110-7583384(+)$1	274	45	68	23.6644
cc[bbvvvvvvvvvvvvvbb]cc	chr3:148895602-148895849(-)$1	247	168	191	23.8757
iiiiwwwwwwwwwwwwwwiiiii	chr9:114176777-114177032(-)$1	255	37	60	22.7373
fffffvvvvvvvvvvvvvfffff	chr6:56462437-56462749(-)$1	312	255	278	23.9368
[eeeeettttttttttteeeee]	chr2:54856277-54856507(+)$1	230	37	60	21.6875
ggggyyyyyyyyyyyyyyyyggg	chr2:74074524-74074945(+)$1	421	250	273	20.1118
bb[bbwwwwwwwwwwwwwwbbbb	chr10:114182074-114182300(+)$1	226	124	147	21.0432
gggggwwwwwwwwwwwwwwgggg	chrX:76918867-76919143(-)$1	276	149	172	23.1023
eeeeevvvvvvvvvvvvveeeee	chr1:245025820-245026099(-)$1	279	120	143	24.5968
eeeeevvvvvvvvvvvvveeeee	chr12:1224973-1225301(+)$1	328	16	39	24.5968
ggg[bbuuuuuuuuuuuubb]gg	chr14:102452070-102452376(+)$1	306	79	102	22.7328
gggggvvvvvvvvvvvvvggggg	chr3:142761857-142762211(+)$1	354	273	296	24.5968
bbdddduuuuuuuuuuuudddd]	chr2:219292875-219293130(+)$1	255	124	147	22.0218
======uuuuuuuuuuuu=====	chr3:73114574-73114859(+)$1	285	165	188	23.3619
fffffvvvvvvvvvvvvvfffff	chr4:110685595-110685875(-)$1	280	196	219	23.9368
eeeeevvvvvvvvvvvvveeeee	chr8:25153981-25154265(+)$1	284	14	37	24.5968
dd[ddddtttttttttttdddd]	chr14:39560662-39560912(-)$1	250	213	236	20.9377
fffffuuuuuuuuuuuuffffff	chr14:31637410-31637664(-)$1	254	120	143	22.0745
dfffffftttttttttttfffff	chr2:198257771-198258011(-)$1	240	34	57	20.8272
eeeeevvvvvvvvvvvvveeeee	chrX:132795697-132795926(-)$1	229	39	62	24.5968
fffffftttttttttttffffff	chr12:26848441-26848662(-)$1	221	171	194	21.1021
!ddddwwwwwwwwwwwwwwdddd	chr19:4035631-4035986(+)$1	355	4	27	22.4491
cdddduuuuuuuuuuuudddd]c	chr6:144749813-144750035(+)$1	222	118	141	21.9863
!a[bbwwwwwwwwwwwwwwbb]a	chr9:127620079-127620365(-)$1	286	169	192	22.1032
fffffftttttttttttffffff	chr11:129998925-129999172(+)$1	247	212	235	21.1021
cc[bbvvvvvvvvvvvvvbbccc	chr6:30545805-30546082(+)$1	277	40	63	23.8446
eeeeevvvvvvvvvvvvveeeee	chr8:25167857-25168149(+)$1	292	71	94	24.5968
iiiiiiuuuuuuuuuuuuiiiii	chr2:21257587-21257820(-)$1	233	103	126	23.0508
eeeeevvvvvvvvvvvvveeeee	chr8:27466405-27466632(-)$1	227	85	108	24.5968
hhhh[auuuuuuuuuuuua]hhh	chr10:12071190-12071455(-)$1	265	48	71	22.2990
dddyyyyyyyyyyyyyyyydddd	chr6:56475134-56475404(-)$1	270	152	175	19.2578
cc[ccctttttttttttccc]cc	chr19:6684685-6684888(-)$1	203	99	122	21.8216
fffffuuuuuuuuuuuuffffff	chr1:19447650-19447885(-)$1	235	209	232	22.0745
bbdddduuuuuuuuuuuudddd2	chr2:173450910-173451216(+)$1	306	260	283	21.7341
eeeeeeuuuuuuuuuuuueeeee	chr11:62484487-62484742(-)$1	255	133	156	23.1249
e[cccvvvvvvvvvvvvvccc]e	chr2:188348812-188349044(-)$1	232	11	34	24.2683
eeeeevvvvvvvvvvvvveeeee	chr1:9809567-9809805(-)$1	238	11	34	24.5968

#otherMatches

#Seq PSSM
AGUCUCAACCCAGUGCUUGAUUA	chr5:138643561-138643815(+)$1	254	125	148	22.8386
AUACCCCAAAACCAAAAAGGUAA	chr3:9489456-9489770(+)$1	314	215	238	23.1903
GAGCGCUGCCCCACUUCCCUGCU	chr14:24607303-24607543(+)$1	240	27	50	23.1023
ACAAAUGAAAGAAGAGGAUUUUG	chr4:83348500-83348763(-)$1	263	79	102	23.1023
UGACUGAUCAUCAUGGCUUCAGU	chr2:62934099-62934469(+)$1	370	215	238	20.8272
GUCAUAUUCCUACUGCAAAUGGC	chr1:16893568-16893822(-)$1	254	201	224	22.6575
UUGAACAAAAACUUGAAGUUCAG	chr14:39648309-39648530(+)$1	221	4	27	21.1021
AGACCAGUACAAGCAAAUCUGUU	chr8:17819442-17819659(+)$1	217	182	205	21.6923
GAAGGAUAAUCGAGGAAACCUGC	chr2:216292884-216293104(-)$1	220	101	124	23.4663
UGGAGGGCAAGCUCGCCACCCUC	chr17:27420237-27420531(-)$1	294	159	182	20.8146
GCUGUGGUUUUGUUUGAAACAGC	chr12:104340515-104340740(+)$1	225	81	104	24.5968
aggccgaggaagagaagaaggCC	chr9:136905053-136905381(-)$1	328	123	146	21.3898
UUCAGAACAAGAAAAUUACUGAG	chr2:21239211-21239447(-)$1	236	91	114	24.5968
UAGCAAGAGAAAUAGGAGGAAAC	chr11:35747405-35747767(+)$1	362	332	355	22.2156
GAAGGAUAAUCGAGGAAACCUGC	chr2:216292822-216293041(-)$1	219	38	61	23.1511
GCUGUGGUUUUGUUUGAAACAGC	chr12:104340504-104340715(+)$1	211	92	115	24.5968
UCAAGUUUUUUUUUUUUUUGGUC	chr8:42798359-42798714(+)$1	355	30	53	20.6420
GGGCGGGCUCGCCUCCCGCCGUC	chr16:89556621-89556948(-)$1	327	120	143	23.0508
AAGGACAUUUAACUAAAACCCCU	chr5:79946921-79947194(-)$1	273	170	193	18.9843
AGCCGUUCUCUACAAUUACCGGC	chr19:6697671-6697901(-)$1	230	199	222	21.3898
GUGCACUAUUCUGACAAACUGCA	chr2:167162931-167163207(-)$1	276	119	142	23.1023
AACUAAAUAUGGAAGAAAUGGUA	chr2:71653750-71654011(+)$1	261	134	157	23.1901
AUCCUCUCUCUCUUCGUCAUGGG	chr11:68205912-68206157(+)$1	245	69	92	20.0767
AGAGCGGGUACGUGUUUAGCUCC	chr11:130011295-130011516(+)$1	221	165	188	23.1203
GUAUUAACGAGACUUUUAUAUGA	chr17:57760355-57760633(+)$1	278	20	43	21.8828
GAGUGAGAGAGAGAAGAACAGUC	chr6:7583110-7583384(+)$1	274	45	68	23.6644
CAAUGAAAUAGACUUACACACUG	chr3:148895602-148895849(-)$1	247	168	191	23.8757
GAGUACCUUCCCACACUGACUUU	chr9:114176777-114177032(-)$1	255	37	60	22.7373
GGUUGGUAAAGAGAGAAAUAACC	chr6:56462437-56462749(-)$1	312	255	278	23.9368
GCGUUCGAGGACGAGAUGAGCGG	chr2:54856277-54856507(+)$1	230	37	60	21.6875
GUCUCAUCCAUACAGCCUUCAGA	chr2:74074524-74074945(+)$1	421	250	273	20.1118
GGUAGGUAUAUCAUCAGAACUCC	chr10:114182074-114182300(+)$1	226	124	147	21.0432
AAGCCAAGAUACAGACAUAGGCU	chrX:76918867-76919143(-)$1	276	149	172	23.1023
CCACGAGAAGAUCAUGGCCGUGG	chr1:245025820-245026099(-)$1	279	120	143	24.5968
UUUUAUUUCUUUUUUCCUUAAAG	chr12:1224973-1225301(+)$1	328	16	39	24.5968
GUCAAGGAAGUGGAUGGACUGGA	chr14:102452070-102452376(+)$1	306	79	102	22.7328
GUGAAACUUAAAUUACACUUUAU	chr3:142761857-142762211(+)$1	354	273	296	24.5968
CCUUGGGAAGCUUAUCAUCCAGU	chr2:219292875-219293130(+)$1	255	124	147	22.0218
CUUCUGACUGCCGUGAAACAGAA	chr3:73114574-73114859(+)$1	285	165	188	23.3619
UCAGUGGAUUUUCUCAUGGCUGA	chr4:110685595-110685875(-)$1	280	196	219	23.9368
AGGAGAACCAGCUGACUACUCCU	chr8:25153981-25154265(+)$1	284	14	37	24.5968
GUCUGCCAAACAACUGCAGGUAA	chr14:39560662-39560912(-)$1	250	213	236	20.9377
UUUGCACAAACAUUUCAGCAAAC	chr14:31637410-31637664(-)$1	254	120	143	22.0745
UUAAGGAUUUUUCCCCCUUUCUU	chr2:198257771-198258011(-)$1	240	34	57	20.8272
CCUUUACAGAUACAGCCAAAAGG	chrX:132795697-132795926(-)$1	229	39	62	24.5968
AUUUUAUAUGGAUAGAUUGGAAU	chr12:26848441-26848662(-)$1	221	171	194	21.1021
CAGCACCUUCACUCCAGCCUGUU	chr19:4035631-4035986(+)$1	355	4	27	22.4491
GGAUAAAGUUGUCAAAAUGUCAC	chr6:144749813-144750035(+)$1	222	118	141	21.9863
GGGGCGCAUUGUCAAUAAAGCAC	chr9:127620079-127620365(-)$1	286	169	192	22.1032
GUAUAUGUAGGGGACCAAUGUAU	chr11:129998925-129999172(+)$1	247	212	235	21.1021
UCAGCAGCAAAAAAAAAAGCGAG	chr6:30545805-30546082(+)$1	277	40	63	23.8446
GGGUAUCCUUGAAGCUCUUGCCC	chr8:25167857-25168149(+)$1	292	71	94	24.5968
CAAAGAUCAACAGCCGCUUCUUU	chr2:21257587-21257820(-)$1	233	103	126	23.0508
GGGGUGAAACAGAUAAAGACUCU	chr8:27466405-27466632(-)$1	227	85	108	24.5968
UCAGCCGCCUCGACUCAAGUUUG	chr10:12071190-12071455(-)$1	265	48	71	22.2990
CUCAGGAGAUGUAAAGGUAGAGG	chr6:56475134-56475404(-)$1	270	152	175	19.2578
GUCGGUAAGGAACAGAAACCCAC	chr19:6684685-6684888(-)$1	203	99	122	21.8216
GUCACCCUCUUGUCAUUGUGACU	chr1:19447650-19447885(-)$1	235	209	232	22.0745
GUAGCUGCCAAAUAAGUAAGUUA	chr2:173450910-173451216(+)$1	306	260	283	21.7341
GGAGCUGGAGAAGGAGGAAGCUC	chr11:62484487-62484742(-)$1	255	133	156	23.1249
UCUGCUUUUUUAACUGUUGUACG	chr2:188348812-188349044(-)$1	232	11	34	24.2683
ACAUCUGCUCUUAAAACUGAUGU	chr1:9809567-9809805(-)$1	238	11	34	24.5968

#DB
((((..............)))))	chr5:138643561-138643815(+)$1	1	125	148	22.8386
.((((.............)))).	chr3:9489456-9489770(+)$1	1	215	238	23.1903
(((((..............))))	chr14:24607303-24607543(+)$1	1	27	50	23.1023
(((((..............))))	chr4:83348500-83348763(-)$1	1	79	102	23.1023
(((((((...........)))))	chr2:62934099-62934469(+)$1	1	215	238	20.8272
(((((.............)))))	chr1:16893568-16893822(-)$1	1	201	224	22.6575
((((((...........))))))	chr14:39648309-39648530(+)$1	1	4	27	21.1021
(((.(((...........))).)	chr8:17819442-17819659(+)$1	1	182	205	21.6923
...((.............)))))	chr2:216292884-216293104(-)$1	1	101	124	23.4663
((.((((...........)))))	chr17:27420237-27420531(-)$1	1	159	182	20.8146
(((((.............)))))	chr12:104340515-104340740(+)$1	1	81	104	24.5968
.((((..............))))	chr9:136905053-136905381(-)$1	1	123	146	21.3898
(((((.............)))))	chr2:21239211-21239447(-)$1	1	91	114	24.5968
(..(..............)..))	chr11:35747405-35747767(+)$1	1	332	355	22.2156
...((.............)))))	chr2:216292822-216293041(-)$1	1	38	61	23.1511
(((((.............)))))	chr12:104340504-104340715(+)$1	1	92	115	24.5968
(((((...........)))))))	chr8:42798359-42798714(+)$1	1	30	53	20.6420
((((((............)))))	chr16:89556621-89556948(-)$1	1	120	143	23.0508
.(((................)))	chr5:79946921-79947194(-)$1	1	170	193	18.9843
.((((..............))))	chr19:6697671-6697901(-)$1	1	199	222	21.3898
(((((..............))))	chr2:167162931-167163207(-)$1	1	119	142	23.1023
.((((.............)))).	chr2:71653750-71654011(+)$1	1	134	157	23.1901
((((................)))	chr11:68205912-68206157(+)$1	1	69	92	20.0767
.((((.............)))).	chr11:130011295-130011516(+)$1	1	165	188	23.1203
((..((............))..)	chr17:57760355-57760633(+)$1	1	20	43	21.8828
((.((.............)).))	chr6:7583110-7583384(+)$1	1	45	68	23.6644
((.((.............)).))	chr3:148895602-148895849(-)$1	1	168	191	23.8757
((((..............)))))	chr9:114176777-114177032(-)$1	1	37	60	22.7373
(((((.............)))))	chr6:56462437-56462749(-)$1	1	255	278	23.9368
.(((((...........))))).	chr2:54856277-54856507(+)$1	1	37	60	21.6875
((((................)))	chr2:74074524-74074945(+)$1	1	250	273	20.1118
((.((..............))))	chr10:114182074-114182300(+)$1	1	124	147	21.0432
(((((..............))))	chrX:76918867-76919143(-)$1	1	149	172	23.1023
(((((.............)))))	chr1:245025820-245026099(-)$1	1	120	143	24.5968
(((((.............)))))	chr12:1224973-1225301(+)$1	1	16	39	24.5968
(((.((............)).))	chr14:102452070-102452376(+)$1	1	79	102	22.7328
(((((.............)))))	chr3:142761857-142762211(+)$1	1	273	296	24.5968
((((((............)))).	chr2:219292875-219293130(+)$1	1	124	147	22.0218
((((((............)))))	chr3:73114574-73114859(+)$1	1	165	188	23.3619
(((((.............)))))	chr4:110685595-110685875(-)$1	1	196	219	23.9368
(((((.............)))))	chr8:25153981-25154265(+)$1	1	14	37	24.5968
((.((((...........)))).	chr14:39560662-39560912(-)$1	1	213	236	20.9377
(((((............))))))	chr14:31637410-31637664(-)$1	1	120	143	22.0745
(((((((...........)))))	chr2:198257771-198258011(-)$1	1	34	57	20.8272
(((((.............)))))	chrX:132795697-132795926(-)$1	1	39	62	24.5968
((((((...........))))))	chr12:26848441-26848662(-)$1	1	171	194	21.1021
.((((..............))))	chr19:4035631-4035986(+)$1	1	4	27	22.4491
(((((............)))).)	chr6:144749813-144750035(+)$1	1	118	141	21.9863
.(.((..............)).)	chr9:127620079-127620365(-)$1	1	169	192	22.1032
((((((...........))))))	chr11:129998925-129999172(+)$1	1	212	235	21.1021
((.((.............)))))	chr6:30545805-30546082(+)$1	1	40	63	23.8446
(((((.............)))))	chr8:25167857-25168149(+)$1	1	71	94	24.5968
((((((............)))))	chr2:21257587-21257820(-)$1	1	103	126	23.0508
(((((.............)))))	chr8:27466405-27466632(-)$1	1	85	108	24.5968
((((.(............).)))	chr10:12071190-12071455(-)$1	1	48	71	22.2990
(((................))))	chr6:56475134-56475404(-)$1	1	152	175	19.2578
((.(((...........))).))	chr19:6684685-6684888(-)$1	1	99	122	21.8216
(((((............))))))	chr1:19447650-19447885(-)$1	1	209	232	22.0745
((((((............)))).	chr2:173450910-173451216(+)$1	1	260	283	21.7341
((((((............)))))	chr11:62484487-62484742(-)$1	1	133	156	23.1249
(.(((.............))).)	chr2:188348812-188349044(-)$1	1	11	34	24.2683
(((((.............)))))	chr1:9809567-9809805(-)$1	1	11	34	24.5968

#PSSM
e : 0.22	g : 0.14	f : 0.12	d : 0.09	c : 0.06	i : 0.04	! : 0.04	b : 0.04	$ : 0.03	h : 0.03	# : 0.03	: : 0.03	= : 0.03	% : 0.01	[ : 0.01	
e : 0.22	d : 0.17	f : 0.16	g : 0.12	c : 0.06	i : 0.04	b : 0.04	h : 0.03	# : 0.03	= : 0.03	! : 0.01	a : 0.01	[ : 0.01	
e : 0.22	d : 0.16	f : 0.14	g : 0.12	[ : 0.12	i : 0.04	h : 0.03	# : 0.03	! : 0.03	c : 0.03	= : 0.03	
e : 0.20	d : 0.17	f : 0.14	g : 0.11	b : 0.11	i : 0.04	c : 0.04	h : 0.03	[ : 0.03	= : 0.03	a : 0.01	! : 0.01	y : 0.01	
e : 0.19	d : 0.17	f : 0.14	b : 0.14	g : 0.09	y : 0.06	w : 0.04	c : 0.04	i : 0.03	h : 0.01	= : 0.01	[ : 0.01	
v : 0.37	w : 0.19	f : 0.08	d : 0.06	y : 0.06	u : 0.04	c : 0.03	i : 0.03	b : 0.03	e : 0.03	t : 0.01	= : 0.01	a : 0.01	
v : 0.37	w : 0.19	u : 0.19	t : 0.09	y : 0.06	f : 0.03	d : 0.03	c : 0.01	
v : 0.37	w : 0.19	u : 0.19	t : 0.17	y : 0.06	
v : 0.37	w : 0.19	u : 0.19	t : 0.17	y : 0.06	
v : 0.37	w : 0.19	u : 0.19	t : 0.17	y : 0.06	
v : 0.37	w : 0.19	u : 0.19	t : 0.17	y : 0.06	
v : 0.37	w : 0.19	u : 0.19	t : 0.17	y : 0.06	
v : 0.37	w : 0.19	u : 0.19	t : 0.17	y : 0.06	
v : 0.37	w : 0.19	u : 0.19	t : 0.17	y : 0.06	
v : 0.37	w : 0.19	u : 0.19	t : 0.17	y : 0.06	
v : 0.37	w : 0.19	u : 0.19	t : 0.17	y : 0.06	
v : 0.37	w : 0.19	u : 0.19	t : 0.16	y : 0.06	g : 0.01	
v : 0.37	w : 0.19	u : 0.14	t : 0.08	f : 0.08	y : 0.06	g : 0.01	e : 0.01	d : 0.01	c : 0.01	
e : 0.20	w : 0.14	f : 0.14	d : 0.12	b : 0.11	y : 0.06	c : 0.04	i : 0.04	a : 0.03	g : 0.03	h : 0.01	= : 0.01	
e : 0.20	d : 0.19	f : 0.14	b : 0.14	g : 0.09	c : 0.04	i : 0.04	y : 0.04	h : 0.01	2 : 0.01	= : 0.01	] : 0.01	
e : 0.20	d : 0.19	f : 0.16	g : 0.11	c : 0.06	] : 0.06	h : 0.04	i : 0.04	2 : 0.03	= : 0.03	b : 0.03	
e : 0.20	d : 0.19	f : 0.16	g : 0.14	] : 0.06	c : 0.06	h : 0.04	i : 0.04	= : 0.03	2 : 0.01	b : 0.01	
e : 0.22	f : 0.17	g : 0.14	d : 0.09	c : 0.08	h : 0.04	i : 0.04	] : 0.04	= : 0.03	8 : 0.01	6 : 0.01	5 : 0.01	b : 0.01	a : 0.01	2 : 0.01	

#score	1401.8270821344
#seq	62
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF821EXR_HNRNPUL1_UTR_m3_run2.txt

#BEAR
hhhhsssssssssshhhhhhh	chr11:93463981-93464236(-)$1	255	164	185	21.4259
hhhhsssssssssshhhhhhh	chr11:93463935-93464181(-)$1	246	109	130	21.4259
ddbbssssssssssbb]dddd	chr22:50013563-50013832(-)$1	269	242	263	19.2914
!cccssssssssssccc22ff	chr22:50013828-50014093(-)$1	265	227	248	19.8500
ee[assssssssssaeeeeeJ	chr17:27047483-27047735(+)$1	252	167	188	18.8929

#otherMatches

#Seq PSSM
UUUGAAAAUUCUCCUAGAUCU	chr11:93463981-93464236(-)$1	255	164	185	21.4259
UUUGAAAAUUCUCCUAGAUCU	chr11:93463935-93464181(-)$1	246	109	130	21.4259
gaguuucaaaaccugcaucac	chr22:50013563-50013832(-)$1	269	242	263	19.2914
ggaggaaaagcggguucgagu	chr22:50013828-50014093(-)$1	265	227	248	19.8500
CCACUGCAGUUCUUGGGGCCG	chr17:27047483-27047735(+)$1	252	167	188	18.8929

#DB
((((..........)))))))	chr11:93463981-93464236(-)$1	1	164	185	21.4259
((((..........)))))))	chr11:93463935-93464181(-)$1	1	109	130	21.4259
((((..........)).))))	chr22:50013563-50013832(-)$1	1	242	263	19.2914
.(((..........)))..))	chr22:50013828-50014093(-)$1	1	227	248	19.8500
((.(..........)))))))	chr17:27047483-27047735(+)$1	1	167	188	18.8929

#PSSM
h : 0.40	d : 0.20	! : 0.20	e : 0.20	
h : 0.40	d : 0.20	c : 0.20	e : 0.20	
h : 0.40	b : 0.20	c : 0.20	[ : 0.20	
h : 0.40	b : 0.20	c : 0.20	a : 0.20	
s : 1.00	
s : 1.00	
s : 1.00	
s : 1.00	
s : 1.00	
s : 1.00	
s : 1.00	
s : 1.00	
s : 1.00	
s : 1.00	
h : 0.40	b : 0.20	c : 0.20	a : 0.20	
h : 0.40	b : 0.20	c : 0.20	e : 0.20	
h : 0.40	] : 0.20	c : 0.20	e : 0.20	
h : 0.40	d : 0.20	2 : 0.20	e : 0.20	
h : 0.40	d : 0.20	2 : 0.20	e : 0.20	
h : 0.40	d : 0.20	f : 0.20	e : 0.20	
h : 0.40	d : 0.20	f : 0.20	J : 0.20	

#score	100.88629893480001
#seq	5
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_UTR_m3_run1.txt

#BEAR
dddddddoooooodddd2	chr12:123997900-123998178(-)$1	278	20	38	12.2316
:::ddddoooooodddd:	chr11:125472097-125472411(+)$1	314	197	215	10.8890
d:eeeeeooooooeeeee	chr3:32933418-32933652(+)$1	234	33	51	12.8271
bbeeeeeooooooeeeee	chr18:43669431-43669704(-)$1	273	134	152	13.4276
::eeeeeooooooeeeee	chr16:74506148-74506403(-)$1	255	0	18	12.7262
bb[ddddoooooodddd]	chr3:33038273-33038540(-)$1	267	22	40	13.2601
:::ddddooooooddddg	chrX:132669837-132670063(-)$1	226	119	137	11.6486
###ddddoooooodddd4	chr2:20192610-20192904(-)$1	294	84	102	12.9948
e[eeeeeooooooeeeee	chrX:132669918-132670156(-)$1	238	49	67	12.8963
b[eeeeeooooooeeeee	chr12:123998110-123998381(-)$1	271	223	241	13.3462

#otherMatches

#Seq PSSM
CACUUCACAUCGAUGAAG	chr12:123997900-123998178(-)$1	278	20	38	12.2316
AUCAUUGGAGGAACAAUU	chr11:125472097-125472411(+)$1	314	197	215	10.8890
AAAAGUACAACAUUGCUU	chr3:32933418-32933652(+)$1	234	33	51	12.8271
UGGUCAGCGUGAACUGAU	chr18:43669431-43669704(-)$1	273	134	152	13.4276
CCAUCAGAUAUUACUGAU	chr16:74506148-74506403(-)$1	255	0	18	12.7262
UUGAGGGAUUCUACCCUG	chr3:33038273-33038540(-)$1	267	22	40	13.2601
AGAUUGUCCUUUUGCAAA	chrX:132669837-132670063(-)$1	226	119	137	11.6486
UCAUGCAUUCUUUUGCAC	chr2:20192610-20192904(-)$1	294	84	102	12.9948
UCUUCCUCGAUAAAGGGA	chrX:132669918-132670156(-)$1	238	49	67	12.8963
CACUUCACAUCGAUGAAG	chr12:123998110-123998381(-)$1	271	223	241	13.3462

#DB
(((((((......)))).	chr12:123997900-123998178(-)$1	1	20	38	12.2316
...((((......)))).	chr11:125472097-125472411(+)$1	1	197	215	10.8890
).(((((......)))))	chr3:32933418-32933652(+)$1	1	33	51	12.8271
))(((((......)))))	chr18:43669431-43669704(-)$1	1	134	152	13.4276
..(((((......)))))	chr16:74506148-74506403(-)$1	1	0	18	12.7262
((.((((......)))).	chr3:33038273-33038540(-)$1	1	22	40	13.2601
...((((......))))(	chrX:132669837-132670063(-)$1	1	119	137	11.6486
...((((......)))).	chr2:20192610-20192904(-)$1	1	84	102	12.9948
(.(((((......)))))	chrX:132669918-132670156(-)$1	1	49	67	12.8963
(.(((((......)))))	chr12:123998110-123998381(-)$1	1	223	241	13.3462

#PSSM
: : 0.30	b : 0.30	d : 0.20	# : 0.10	e : 0.10	
: : 0.40	b : 0.20	[ : 0.20	d : 0.10	# : 0.10	
e : 0.50	: : 0.20	d : 0.10	[ : 0.10	# : 0.10	
d : 0.50	e : 0.50	
d : 0.50	e : 0.50	
d : 0.50	e : 0.50	
d : 0.50	e : 0.50	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
d : 0.50	e : 0.50	
d : 0.50	e : 0.50	
d : 0.50	e : 0.50	
d : 0.50	e : 0.50	
e : 0.50	2 : 0.10	: : 0.10	] : 0.10	g : 0.10	4 : 0.10	

#score	126.24809517302995
#seq	10
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456SOS_UTP18_CDS_m2_run1.txt

#BEAR
ccc[a[bb"""bbyyyyyyyyyyyyyyyybb333bb]a]c	chr9:100777578-100777803(+)$1	225	109	149	65.3567
ccc[a[bb"""bbyyyyyyyyyyyyyyyybb333bb]a]c	chr9:100777604-100777861(+)$1	257	83	123	65.3567

#otherMatches

#Seq PSSM
cagaugaugaaggagaagaugauuaagaCCCCAGAUGACC	chr9:100777578-100777803(+)$1	225	109	149	65.3567
cagaugaugaaggagaagaugauuaagaCCCCAGAUGACC	chr9:100777604-100777861(+)$1	257	83	123	65.3567

#DB
(((.(.((...((................))...)).).)	chr9:100777578-100777803(+)$1	1	109	149	65.3567
(((.(.((...((................))...)).).)	chr9:100777604-100777861(+)$1	1	83	123	65.3567

#PSSM
c : 1.00	
c : 1.00	
c : 1.00	
[ : 1.00	
a : 1.00	
[ : 1.00	
b : 1.00	
b : 1.00	
" : 1.00	
" : 1.00	
" : 1.00	
b : 1.00	
b : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
b : 1.00	
b : 1.00	
3 : 1.00	
3 : 1.00	
3 : 1.00	
b : 1.00	
b : 1.00	
] : 1.00	
a : 1.00	
] : 1.00	
c : 1.00	

#score	130.71346565119993
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_CDS_m3_run1.txt

#BEAR
[bbqqqqqqqqbb]e	chr14:76644089-76644354(+)$1	265	192	207	11.2109
eeeqqqqqqqqeeee	chr3:53265383-53265666(-)$1	283	159	174	11.3225
dddqqqqqqqqdddd	chr12:57920418-57920679(+)$1	261	172	187	12.1308
dddqqqqqqqqdddd	chr11:85671692-85671980(-)$1	288	117	132	12.1308
cccqqqqqqqqccc:	chr11:101827160-101827546(+)$1	386	138	153	12.3156
cccqqqqqqqqccc:	chr19:10914138-10914417(+)$1	279	108	123	12.3156
cccqqqqqqqqcccD	chr13:39586883-39587205(-)$1	322	226	241	12.3543
cccqqqqqqqqcccg	chr14:63861893-63862195(-)$1	302	179	194	12.8883
dddqqqqqqqqdddd	chr5:176917489-176917804(-)$1	315	210	225	12.1308
cccqqqqqqqqccc:	chr20:30155720-30156028(+)$1	308	38	53	12.3156
dddqqqqqqqqdddd	chrX:70468538-70468828(-)$1	290	42	57	12.1308
cccrrrrrrrrrccc	chr16:68324133-68324401(+)$1	268	74	89	7.5713
cccqqqqqqqqccc2	chr1:10342203-10342486(+)$1	283	237	252	12.8419
cccqqqqqqqqccc3	chr10:97131063-97131346(-)$1	283	153	168	13.0617
cccqqqqqqqqccc:	chr1:14107346-14107648(+)$1	302	287	302	12.3156
cccsssssssssscc	chr14:23777866-23778135(+)$1	269	69	84	7.5829
eeeqqqqqqqqeeee	chr16:2819099-2819363(+)$1	264	140	155	11.3225
cccsssssssssscc	chr19:42839801-42840202(+)$1	401	321	336	7.5829
cccsssssssssscc	chr7:116608283-116608561(+)$1	278	170	185	7.5829
dddqqqqqqqqdddd	chr19:8530106-8530371(+)$1	265	12	27	12.1308
cccrrrrrrrrrccc	chr4:1215494-1215783(-)$1	289	244	259	7.5713
a[aqqqqqqqqa]a3	chr17:4859086-4859348(+)$1	262	83	98	11.6580
cccqqqqqqqqccc2	chr3:48016819-48017116(-)$1	297	32	47	12.8419
cccqqqqqqqqccc:	chr5:112227542-112227835(-)$1	293	215	230	12.3156
fffqqqqqqqqffff	chr22:40749181-40749471(+)$1	290	47	62	10.9566
cccqqqqqqqqccc2	chr20:401532-401787(+)$1	255	47	62	12.8419
cccqqqqqqqqccc]	chr2:187511227-187511525(+)$1	298	222	237	12.9669
cccqqqqqqqqccc4	chr8:30406948-30407192(+)$1	244	146	161	13.0295
eeeqqqqqqqqeeee	chr6:33179870-33180182(+)$1	312	271	286	11.3225
cccqqqqqqqqccc4	chr12:120150389-120150672(-)$1	283	220	235	13.0295
eeeqqqqqqqqeeee	chr2:130918726-130918985(-)$1	259	153	168	11.3225
dddqqqqqqqqdddd	chr16:30733712-30734019(+)$1	307	236	251	12.1308
wwwwwwwwwwwwwwb	chrX:76849214-76849509(-)$1	295	169	184	7.2824
cccqqqqqqqqccc:	chr14:24658521-24658824(-)$1	303	267	282	12.3156
cccqqqqqqqqccc:	chr5:112227418-112227712(-)$1	294	92	107	12.3156
cccqqqqqqqqcccd	chr9:71849237-71849519(+)$1	282	214	229	13.0029
dddqqqqqqqqdddd	chr12:57113947-57114188(-)$1	241	12	27	12.1308
cccqqqqqqqqccc4	chr2:70129274-70129609(+)$1	335	309	324	13.0295
[bbqqqqqqqqbbee	chr9:139917409-139917703(-)$1	294	175	190	11.2489
cccqqqqqqqqccce	chr19:5238973-5239266(-)$1	293	258	273	12.9159
gggqqqqqqqqgggg	chr1:32045732-32046001(+)$1	269	197	212	11.5513
eeeqqqqqqqqeeee	chr1:180042806-180043125(+)$1	319	246	261	11.3225
!bbqqqqqqqqbb44	chr16:2819014-2819299(+)$1	285	39	54	11.4134
dddqqqqqqqqdddd	chr15:42523974-42524283(-)$1	309	42	57	12.1308
dddqqqqqqqqdddd	chr2:27558080-27558355(-)$1	275	77	92	12.1308
dddqqqqqqqqdddd	chr6:30610411-30610667(+)$1	256	226	241	12.1308
cccsssssssssscc	chr9:115092622-115092948(-)$1	326	229	244	7.5829
dddqqqqqqqqdddd	chr22:37420850-37421162(+)$1	312	268	283	12.1308
cccrrrrrrrrrccc	chr12:42623920-42624191(-)$1	271	173	188	7.5713
[bbqqqqqqqqbb]i	chr2:231902480-231902752(+)$1	272	207	222	11.1897
[bbqqqqqqqqbb]b	chrX:21863303-21863595(+)$1	292	77	92	11.0881
:bbqqqqqqqqbbbb	chr2:70129459-70129788(+)$1	329	30	45	10.0211
gggqqqqqqqqgggg	chr6:43415198-43415535(+)$1	337	290	305	11.5513
cccsssssssssscc	chr7:141464594-141464842(+)$1	248	107	122	7.5829
dddqqqqqqqqdddd	chr11:101827393-101827693(+)$1	300	24	39	12.1308

#otherMatches

#Seq PSSM
CAUUUUUCUUUGUCA	chr14:76644089-76644354(+)$1	265	192	207	11.2109
AUCAUCCAGGAGAUC	chr3:53265383-53265666(-)$1	283	159	174	11.3225
UUGCUCAACCACAGU	chr12:57920418-57920679(+)$1	261	172	187	12.1308
AGAUCUUUUUUUCUU	chr11:85671692-85671980(-)$1	288	117	132	12.1308
cagccuguauacugu	chr11:101827160-101827546(+)$1	386	138	153	12.3156
ACAAUCUCUCCUGUU	chr19:10914138-10914417(+)$1	279	108	123	12.3156
CCCUCAUUCCCGGGG	chr13:39586883-39587205(-)$1	322	226	241	12.3543
CCUCUUCUCUCAGGU	chr14:63861893-63862195(-)$1	302	179	194	12.8883
GGAAAAGUAUGUCCU	chr5:176917489-176917804(-)$1	315	210	225	12.1308
UGCAAAAAUAGGUAA	chr20:30155720-30156028(+)$1	308	38	53	12.3156
CUGCCCGACCUCAGU	chrX:70468538-70468828(-)$1	290	42	57	12.1308
guaucuuucucuuac	chr16:68324133-68324401(+)$1	268	74	89	7.5713
UGGCCAUUUUUCCAC	chr1:10342203-10342486(+)$1	283	237	252	12.8419
UUGAACCAGACUAAU	chr10:97131063-97131346(-)$1	283	153	168	13.0617
AGCCCCAGUCUGCUG	chr1:14107346-14107648(+)$1	302	287	302	12.3156
GGAACUCUuccucuc	chr14:23777866-23778135(+)$1	269	69	84	7.5829
UGCCCAAACCUGCAA	chr16:2819099-2819363(+)$1	264	140	155	11.3225
CCCUGGUACUGAUGG	chr19:42839801-42840202(+)$1	401	321	336	7.5829
gucuuacuauguuga	chr7:116608283-116608561(+)$1	278	170	185	7.5829
UCUAAGUCUUGAGAA	chr19:8530106-8530371(+)$1	265	12	27	12.1308
GGGCCCCCUUCUCCC	chr4:1215494-1215783(-)$1	289	244	259	7.5713
gucucugcccugucu	chr17:4859086-4859348(+)$1	262	83	98	11.6580
GCUUCAUUAAUAGCU	chr3:48016819-48017116(-)$1	297	32	47	12.8419
uucuuuAUUCUGAAU	chr5:112227542-112227835(-)$1	293	215	230	12.3156
UUUUUUCAGGUGAAU	chr22:40749181-40749471(+)$1	290	47	62	10.9566
GCUGAACACGGAGCC	chr20:401532-401787(+)$1	255	47	62	12.8419
AAAAGGAAUUGUUUA	chr2:187511227-187511525(+)$1	298	222	237	12.9669
CCUGUUUGGUGAGGC	chr8:30406948-30407192(+)$1	244	146	161	13.0295
AGCUGUGCUAUGCUC	chr6:33179870-33180182(+)$1	312	271	286	11.3225
AUGUAUCUAUUCAUG	chr12:120150389-120150672(-)$1	283	220	235	13.0295
ACUACCGACUCAGUG	chr2:130918726-130918985(-)$1	259	153	168	11.3225
GCCCUCAUCCAGGCC	chr16:30733712-30734019(+)$1	307	236	251	12.1308
UGUUCCAUUUGUCUU	chrX:76849214-76849509(-)$1	295	169	184	7.2824
CAGCUUCUCUUCUGA	chr14:24658521-24658824(-)$1	303	267	282	12.3156
uucuuuAUUCUGAAU	chr5:112227418-112227712(-)$1	294	92	107	12.3156
GCCGAGCCGAUGGUG	chr9:71849237-71849519(+)$1	282	214	229	13.0029
UCUGUUGACAAAGGU	chr12:57113947-57114188(-)$1	241	12	27	12.1308
gcuucuucuucggcu	chr2:70129274-70129609(+)$1	335	309	324	13.0295
ugcccucucccGUGG	chr9:139917409-139917703(-)$1	294	175	190	11.2489
GCCUUCCGCCUGGCG	chr19:5238973-5239266(-)$1	293	258	273	12.9159
CUGGACCUGUGUGGG	chr1:32045732-32046001(+)$1	269	197	212	11.5513
CACCUUUUUCAGUGC	chr1:180042806-180043125(+)$1	319	246	261	11.3225
AGCCAACCCCAGCCA	chr16:2819014-2819299(+)$1	285	39	54	11.4134
AAAUCAAACACUUUG	chr15:42523974-42524283(-)$1	309	42	57	12.1308
CUGUACUCUUUCAGC	chr2:27558080-27558355(-)$1	275	77	92	12.1308
UGGGAAACUCACCAG	chr6:30610411-30610667(+)$1	256	226	241	12.1308
UAGGAAUCUUUUACU	chr9:115092622-115092948(-)$1	326	229	244	7.5829
gugacccuccccgcu	chr22:37420850-37421162(+)$1	312	268	283	12.1308
agcgcgaucuuggcu	chr12:42623920-42624191(-)$1	271	173	188	7.5713
gcgggccggggcggc	chr2:231902480-231902752(+)$1	272	207	222	11.1897
UGGCUGACucucccu	chrX:21863303-21863595(+)$1	292	77	92	11.0881
ugcuucuguuugugc	chr2:70129459-70129788(+)$1	329	30	45	10.0211
GGCUGCCGAAUGCCC	chr6:43415198-43415535(+)$1	337	290	305	11.5513
ugcuuucuuAAUUGC	chr7:141464594-141464842(+)$1	248	107	122	7.5829
ucuuccucuccaggu	chr11:101827393-101827693(+)$1	300	24	39	12.1308

#DB
.((........)).)	chr14:76644089-76644354(+)$1	1	192	207	11.2109
(((........))))	chr3:53265383-53265666(-)$1	1	159	174	11.3225
(((........))))	chr12:57920418-57920679(+)$1	1	172	187	12.1308
(((........))))	chr11:85671692-85671980(-)$1	1	117	132	12.1308
(((........))).	chr11:101827160-101827546(+)$1	1	138	153	12.3156
(((........))).	chr19:10914138-10914417(+)$1	1	108	123	12.3156
(((........))))	chr13:39586883-39587205(-)$1	1	226	241	12.3543
(((........)))(	chr14:63861893-63862195(-)$1	1	179	194	12.8883
(((........))))	chr5:176917489-176917804(-)$1	1	210	225	12.1308
(((........))).	chr20:30155720-30156028(+)$1	1	38	53	12.3156
(((........))))	chrX:70468538-70468828(-)$1	1	42	57	12.1308
(((.........)))	chr16:68324133-68324401(+)$1	1	74	89	7.5713
(((........))).	chr1:10342203-10342486(+)$1	1	237	252	12.8419
(((........))).	chr10:97131063-97131346(-)$1	1	153	168	13.0617
(((........))).	chr1:14107346-14107648(+)$1	1	287	302	12.3156
(((..........))	chr14:23777866-23778135(+)$1	1	69	84	7.5829
(((........))))	chr16:2819099-2819363(+)$1	1	140	155	11.3225
(((..........))	chr19:42839801-42840202(+)$1	1	321	336	7.5829
(((..........))	chr7:116608283-116608561(+)$1	1	170	185	7.5829
(((........))))	chr19:8530106-8530371(+)$1	1	12	27	12.1308
(((.........)))	chr4:1215494-1215783(-)$1	1	244	259	7.5713
(.(........).).	chr17:4859086-4859348(+)$1	1	83	98	11.6580
(((........))).	chr3:48016819-48017116(-)$1	1	32	47	12.8419
(((........))).	chr5:112227542-112227835(-)$1	1	215	230	12.3156
(((........))))	chr22:40749181-40749471(+)$1	1	47	62	10.9566
(((........))).	chr20:401532-401787(+)$1	1	47	62	12.8419
(((........))).	chr2:187511227-187511525(+)$1	1	222	237	12.9669
(((........))).	chr8:30406948-30407192(+)$1	1	146	161	13.0295
(((........))))	chr6:33179870-33180182(+)$1	1	271	286	11.3225
(((........))).	chr12:120150389-120150672(-)$1	1	220	235	13.0295
(((........))))	chr2:130918726-130918985(-)$1	1	153	168	11.3225
(((........))))	chr16:30733712-30734019(+)$1	1	236	251	12.1308
..............)	chrX:76849214-76849509(-)$1	1	169	184	7.2824
(((........))).	chr14:24658521-24658824(-)$1	1	267	282	12.3156
(((........))).	chr5:112227418-112227712(-)$1	1	92	107	12.3156
(((........))))	chr9:71849237-71849519(+)$1	1	214	229	13.0029
(((........))))	chr12:57113947-57114188(-)$1	1	12	27	12.1308
(((........))).	chr2:70129274-70129609(+)$1	1	309	324	13.0295
.((........))))	chr9:139917409-139917703(-)$1	1	175	190	11.2489
(((........)))(	chr19:5238973-5239266(-)$1	1	258	273	12.9159
(((........))))	chr1:32045732-32046001(+)$1	1	197	212	11.5513
(((........))))	chr1:180042806-180043125(+)$1	1	246	261	11.3225
.((........))..	chr16:2819014-2819299(+)$1	1	39	54	11.4134
(((........))))	chr15:42523974-42524283(-)$1	1	42	57	12.1308
(((........))))	chr2:27558080-27558355(-)$1	1	77	92	12.1308
(((........))))	chr6:30610411-30610667(+)$1	1	226	241	12.1308
(((..........))	chr9:115092622-115092948(-)$1	1	229	244	7.5829
(((........))))	chr22:37420850-37421162(+)$1	1	268	283	12.1308
(((.........)))	chr12:42623920-42624191(-)$1	1	173	188	7.5713
.((........)).)	chr2:231902480-231902752(+)$1	1	207	222	11.1897
.((........)).)	chrX:21863303-21863595(+)$1	1	77	92	11.0881
.((........))((	chr2:70129459-70129788(+)$1	1	30	45	10.0211
(((........))))	chr6:43415198-43415535(+)$1	1	290	305	11.5513
(((..........))	chr7:141464594-141464842(+)$1	1	107	122	7.5829
(((........))))	chr11:101827393-101827693(+)$1	1	24	39	12.1308

#PSSM
c : 0.49	d : 0.21	e : 0.09	[ : 0.07	g : 0.03	a : 0.01	f : 0.01	w : 0.01	! : 0.01	: : 0.01	
c : 0.49	d : 0.21	b : 0.10	e : 0.09	g : 0.03	[ : 0.01	f : 0.01	w : 0.01	
c : 0.49	d : 0.21	b : 0.10	e : 0.09	g : 0.03	a : 0.01	f : 0.01	w : 0.01	
q : 0.83	s : 0.09	r : 0.05	w : 0.01	
q : 0.83	s : 0.09	r : 0.05	w : 0.01	
q : 0.83	s : 0.09	r : 0.05	w : 0.01	
q : 0.83	s : 0.09	r : 0.05	w : 0.01	
q : 0.83	s : 0.09	r : 0.05	w : 0.01	
q : 0.83	s : 0.09	r : 0.05	w : 0.01	
q : 0.83	s : 0.09	r : 0.05	w : 0.01	
q : 0.83	s : 0.09	r : 0.05	w : 0.01	
c : 0.34	d : 0.21	b : 0.10	e : 0.09	s : 0.09	r : 0.05	g : 0.03	a : 0.01	f : 0.01	w : 0.01	
c : 0.40	d : 0.21	b : 0.10	e : 0.09	s : 0.09	g : 0.03	] : 0.01	f : 0.01	w : 0.01	
c : 0.49	d : 0.21	e : 0.10	] : 0.05	g : 0.03	a : 0.01	f : 0.01	w : 0.01	4 : 0.01	b : 0.01	
d : 0.23	e : 0.14	c : 0.14	: : 0.12	4 : 0.07	g : 0.05	2 : 0.05	b : 0.05	3 : 0.03	D : 0.01	f : 0.01	] : 0.01	i : 0.01	

#score	622.9987055350983
#seq	55
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF656IDO_XRCC6_transcript_m1_run1.txt

#BEAR
bb"""ffffff!!dddd[=============!!bb[f	chr3:171905336-171905650(+)$1	314	139	176	9.2621
c[ccc[bb[ccc[ddddmmmmdddd]ccc]bbccc]c	chr5:140105697-140105930(+)$1	233	75	112	12.4810
ddd####eeeee[bbbbmmmmbb]bbeeeee22dddd	chr2:85546235-85546449(-)$1	214	64	101	10.6450
ddd####eeeee[bbbbmmmmbb]bbeeeee22dddd	chr2:85546249-85546464(-)$1	215	79	116	10.6450
ffff[eeeee!!ddddoooooodddd22eeeee]fff	chr3:53272776-53273043(-)$1	267	194	231	10.4983
bb!!ggggggg!!cccnnnnncccggggggg]bb]ee	chr14:31644429-31644694(-)$1	265	109	146	11.0444
ggggggg[bb!!eeeeellleeeee]bbgggggggbb	chr17:57915201-57915472(+)$1	271	111	148	9.4297
bb[eeeee[bb[ddddammmma]dddd]bbeeeee]b	chr1:8829460-8829714(-)$1	254	10	47	9.8953
bb!!eeeee####ddddmmmmdddd333eeeee22bb	chr17:58319690-58319924(-)$1	234	132	169	12.0126
eee"""dddd"""ddddmmmmdddd]dddd4444eee	chr12:27074506-27074752(-)$1	246	203	240	12.6699
c[ccc[bb[ccc[ddddmmmmdddd]ccc]bbccc]c	chr5:140105676-140105897(+)$1	221	96	133	12.4810
!!iiiiiiiiieeeeeooooooeeeee22iiiiiiii	chr17:73658210-73658484(-)$1	274	198	235	9.9836
ggggggg[dddd[cccnnnnncccdddd333gggggg	chr3:171523628-171523877(-)$1	249	83	120	10.9840
[bbddddggggggg!!ammmma22ggggggg333ddd	chr9:134295967-134296228(+)$1	261	15	52	10.6196
ddd!!cccgggggggnnnnnggggggg]ccc333ddd	chr6:16646110-16646349(-)$1	239	91	128	9.4581
ddddgggggggbb!!ammmma22bb]ggggggg4444	chr13:111548063-111548331(-)$1	268	107	144	9.6247
eee[eeeee####ddddmmmmdddd]eeeee]eeeee	chr16:457185-457440(+)$1	255	57	94	12.2883
ggggggg[dddd[cccnnnnncccdddd333gggggg	chr3:171523677-171523889(-)$1	212	95	132	10.9840
b[dddd[bb[bb[ddddoooooodddd]bb]bb]ddd	chr22:38006659-38006920(+)$1	261	79	116	9.3653
dddd!!ccc[bb[bboooooobbbbccc22ddddfff	chr3:185817093-185817303(-)$1	210	80	117	9.4021
ddd"""eeeee"""ccc"""dddd[ccc!!bb[dddd	chr1:202741743-202741996(-)$1	253	62	99	8.4272
ddd[gggggggddddbbmmmmbb333dddd22ggggg	chr21:46289845-46290153(-)$1	308	181	218	11.8602
d[dddd[eeeee[ddddlllddddeeeeedddddddd	chr2:216279114-216279368(-)$1	254	106	143	10.3135
eeeee!!dddd"""ccclllccc333dddd]eeeeeF	chr11:65207570-65207800(+)$1	230	13	50	11.2197
dddd!!ccc[bb[bboooooobbbbccc22ddddfff	chr3:185817056-185817293(-)$1	237	70	107	9.4021
dccc!!ffffff"""ccclllccc333ffffff]ccc	chrX:132742051-132742310(-)$1	259	94	131	11.7830
ffffff[bb[cccddddmmmmdddd]cccbb22ffff	chr13:51179414-51179688(+)$1	274	112	149	10.5917
[a[ffffff"""eeeeemmmmeeeee22ffffffadd	chr8:121822600-121822852(-)$1	252	103	140	9.8657
ccc[dddd[ccc!!aooooooa22ccc]ddddccc:f	chr8:17760819-17761108(-)$1	289	130	167	9.4761
ddd[ggggggg!!ddddmmmmdddd]ggggggg]ddd	chr20:17941976-17942229(-)$1	253	105	142	14.3243
ii"""a[dddd"""cccmmmmccc22dddd]a333ii	chr14:23779491-23779743(+)$1	252	190	227	13.0108
dd"""ffffff!!dddd"""iiiiiiiii[ggggggg	chr9:37258601-37258851(+)$1	250	55	92	9.9191
ccccc[ggggggg!!bbmmmmbb]ggggggg]ccc]c	chr14:34904754-34904986(-)$1	232	188	225	12.3475
fffff!!dddd"""ccclllccc]dddd]ffffff]c	chr2:235907429-235907676(+)$1	247	90	127	11.4818
ggggggg[dddd[ddddmmmmdddddddd22gggggg	chrX:133013479-133013756(-)$1	277	8	45	12.3813
ffff[ffffff[a[ccclllccc]a]fffffffffff	chr17:15414483-15414761(-)$1	278	76	113	10.7086
:ggggggg[ccc[ddddmmmmdddd333cccgggggg	chr15:99254245-99254486(+)$1	241	12	49	12.9151
fff!!a[a!!a!!dddd[dddd[dddd[ccc[dddd!	chr10:35095661-35095907(-)$1	246	67	104	8.2079
ggggg!!dddd"""cccmmmmccc]dddd]ggggggg	chr21:16404933-16405180(-)$1	247	89	126	12.9928
c[bb[ggggggg[bbbbmmmmbb]bbggggggg]bbc	chr7:92284077-92284315(-)$1	238	71	108	11.6344
cc!!ccc[ddddrrrrrrrrrdddd]ccc]ccc]a]e	chr1:44736103-44736337(-)$1	234	73	110	8.8885
ggggg!!bb[ccc!!bbmmmmbb22ccc]bb22gggg	chr9:134363483-134363745(+)$1	262	98	135	10.3923
::::ggggggg!!ddddlllddddgggggggffffff	chr12:69640534-69640802(+)$1	268	110	147	8.8034
b####ggggggg[bbbbmmmmbb]bbgggggggbbbb	chr17:7411145-7411393(+)$1	248	80	117	11.1651
[ccc[ccc[cccddddnnnnndddd22cccccc]ccc	chr2:138749659-138749921(+)$1	262	145	182	10.8075
eeee!!ccc[eeeeebbmmmmbb]eeeee]ccc]eee	chr2:118852834-118853092(+)$1	258	90	127	10.8006
dddd[ccc[bb"""cccmmmmccc4444bb]cccddd	chr16:24747336-24747575(+)$1	239	1	38	12.2189
ddd[ffffffbbcccooooooccc]bb]ffffffddd	chr16:81525689-81525939(+)$1	250	93	130	9.5086
cc[a[bb[dddd[ddddmmmmdddd22dddd]bb]a2	chr8:17766069-17766339(-)$1	270	115	152	11.0347
ii[bbffffff"""ddddllldddd]ffffff]bbii	chr16:23653183-23653435(+)$1	252	99	136	10.5957
dd!!ccc!!gggggggammmma]gggggggccc22dd	chr8:22878691-22878949(-)$1	258	18	55	11.5098
c[iiiiiiiii"""ccclllccc333iiiiiiiii]c	chr12:46752578-46752831(-)$1	253	77	114	13.4513
c[bb[ggggggg[bbbbmmmmbb]bbggggggg]bbc	chr7:92284115-92284332(-)$1	217	88	125	11.6344
ffaeeeee$$$$$ddddllldddd4444eeeee]a]f	chr16:50629862-50630128(+)$1	266	118	155	10.4806
ccc!!bb[dddd[bbbbmmmmbb]bbdddd]bbccc2	chr14:34904786-34905015(-)$1	229	95	132	10.0721
:ddddeeeee####cccmmmmccc333eeeee]dddd	chr17:58319724-58319933(-)$1	209	3	40	11.2548

#otherMatches

#Seq PSSM
acuuuguugcgcaggcuagagugugguggugccaucu	chr3:171905336-171905650(+)$1	314	139	176	9.2621
GUGUCAUCAAACCACCUCUCUGGGUUGUUCGAGACCC	chr5:140105697-140105930(+)$1	233	75	112	12.4810
gagguugcagugagccgagaucgugccacugaacucc	chr2:85546235-85546449(-)$1	214	64	101	10.6450
gagguugcagugagccgagaucgugccacugaacucc	chr2:85546249-85546464(-)$1	215	79	116	10.6450
ugaguuggguaguggugugagaaccgugacccgucuu	chr3:53272776-53273043(-)$1	267	194	231	10.4983
uguugcccagguuagucuugaacuucugggcucaagc	chr14:31644429-31644694(-)$1	265	109	146	11.0444
CAGAGUACAGUAUCAGCUGAGCUGACCUUACUCUGAG	chr17:57915201-57915472(+)$1	271	111	148	9.4297
uagcugggcaugauagcaugagccuguagucccaggu	chr1:8829460-8829714(-)$1	254	10	47	9.8953
gaaaaaagaaaaaaaggaaacccuuauauuuuugguc	chr17:58319690-58319924(-)$1	234	132	169	12.0126
agcgacacagcaaagucgggggacuacuguaacagcu	chr12:27074506-27074752(-)$1	246	203	240	12.6699
GUGUCAUCAAACCACCUCUCUGGGUUGUUCGAGACCC	chr5:140105676-140105897(+)$1	221	96	133	12.4810
UUAAACAGGUUGAGUUUUGAGCAGCUUUUGGCCUGuu	chr17:73658210-73658484(-)$1	274	198	235	9.9836
gaggucuugcuaugucacccaggcuaguuucagacuu	chr3:171523628-171523877(-)$1	249	83	120	10.9840
aguccugucucagccuccugaguagcugggauuacag	chr9:134295967-134296228(+)$1	261	15	52	10.6196
aggcuguucuggagcccuguguuccagcaauucuccu	chr6:16646110-16646349(-)$1	239	91	128	9.4581
GGAGAGCUUACCAGUGCUACCUAUGUGUAGGCUGACA	chr13:111548063-111548331(-)$1	268	107	144	9.6247
GGUUCCCACAAACAUCCACUGGGGUCGUGGGCACUUG	chr16:457185-457440(+)$1	255	57	94	12.2883
gaggucuugcuaugucacccaggcuaguuucagacuu	chr3:171523677-171523889(-)$1	212	95	132	10.9840
GCAGGGUGGAGUCUUACCCUGUUGUGAAACACCUCCC	chr22:38006659-38006920(+)$1	261	79	116	9.3653
AGCUCAGAGGCUUGUCAUGUUGCAGCUCCCAGCUCUU	chr3:185817093-185817303(-)$1	210	80	117	9.4021
gagaaccgcuugaacccggaagguggagguugcagug	chr1:202741743-202741996(-)$1	253	62	99	8.4272
UGACUCAGACUGACCGGUAAUCCAGAGGUCUGGGUCU	chr21:46289845-46290153(-)$1	308	181	218	11.8602
AAGAUUGUUCUUGCCCAAUGUGGGAAGAGAAUCUAAG	chr2:216279114-216279368(-)$1	254	106	143	10.3135
AUUUGAAAUAAUaauagguacuggauuuaugcaaaug	chr11:65207570-65207800(+)$1	230	13	50	11.2197
AGCUCAGAGGCUUGUCAUGUUGCAGCUCCCAGCUCUU	chr3:185817056-185817293(-)$1	237	70	107	9.4021
UGCCUUGCUGUGUUUGCACUUUGCUGCCACAGCUGGC	chrX:132742051-132742310(-)$1	259	94	131	11.7830
GGUCCCUUGUACCUGCUGUUUAGCAUGGUCACUGGGG	chr13:51179414-51179688(+)$1	274	112	149	10.5917
UGUGGAAACAACUUUGCAUUUGUAAACAGUUUCCCCU	chr8:121822600-121822852(-)$1	252	103	140	9.8657
GAACUUUUGAGGAAGAAGGAGCAGCCUGAGAAUUCAG	chr8:17760819-17761108(-)$1	289	130	167	9.4761
CAGAUCAGAGAUUGUGGAGUUUCACUUCUUUGGACUG	chr20:17941976-17942229(-)$1	253	105	142	14.3243
UAGAAUGUGGCAACGUAGUUGUGCUCGCCAGAACGUG	chr14:23779491-23779743(+)$1	252	190	227	13.0108
gaggaucgcuugagccugugagguugaggcugcagug	chr9:37258601-37258851(+)$1	250	55	92	9.9191
GUCUGAUAUUUUCAACUACACAgggagaauaacagua	chr14:34904754-34904986(-)$1	232	188	225	12.3475
UCUGCUUGGACUGUCCUUUGAGGUGUCCUGCAGGCAC	chr2:235907429-235907676(+)$1	247	90	127	11.4818
ugauucuccugccucagccuccugaguagcugggauu	chrX:133013479-133013756(-)$1	277	8	45	12.3813
CUGUCUUUAUUAUGGUGACACAUGGGAGUGAAAUAGA	chr17:15414483-15414761(-)$1	278	76	113	10.7086
UGUGUUGGUAAGCUGCUUUAGAGCAUUUCUUUUAACA	chr15:99254245-99254486(+)$1	241	12	49	12.9151
auGUUCUCAUAUUCAGAGGUGCUGGGCUGGACUCCCA	chr10:35095661-35095907(-)$1	246	67	104	8.2079
UCCUGCUUCAUUUCCUGAAUGUAGUGUGACCAGGGGA	chr21:16404933-16405180(-)$1	247	89	126	12.9928
gaggcugcagugagccaugauugugccauugcaaccc	chr7:92284077-92284315(-)$1	238	71	108	11.6344
CCUUGAGGAAGUGAAUUCUGGGCUUGCUCUGGAGCAC	chr1:44736103-44736337(-)$1	234	73	110	8.8885
UGCUGUUGGUUGGUAGCCACCGUGCCCAUUCCUCAGC	chr9:134363483-134363745(+)$1	262	98	135	10.3923
aguugcccaggcuggucuuagacuccugggcucaagg	chr12:69640534-69640802(+)$1	268	110	147	8.8034
gaaguugcagugagccgagaucgugccauugcacucc	chr17:7411145-7411393(+)$1	248	80	117	11.1651
gccugcugucaaagcuauuugagcuccuugugggagg	chr2:138749659-138749921(+)$1	262	145	182	10.8075
ggcuuuggagucagacugcaugguuuugaaucccagc	chr2:118852834-118853092(+)$1	258	90	127	10.8006
uagccuggugugguggcacaugccuguaaucccagcu	chr16:24747336-24747575(+)$1	239	1	38	12.2189
augaggcucucuugcuuucccgcagaguggagcccau	chr16:81525689-81525939(+)$1	250	93	130	9.5086
gcugucaccaccaccgcggcuguggcagguguugccu	chr8:17766069-17766339(-)$1	270	115	152	11.0347
GAcucugucgcccaguccugagggccgcggcgcgauc	chr16:23653183-23653435(+)$1	252	99	136	10.5957
GAAAUGGUUGCCAUCUCAGGAGUAGAUGGCCCGGCUC	chr8:22878691-22878949(-)$1	258	18	55	11.5098
UGCCUAGGGAAAAUUCCAAUGGAUGAUUUUCUGGGAG	chr12:46752578-46752831(-)$1	253	77	114	13.4513
gaggcugcagugagccaugauugugccauugcaaccc	chr7:92284115-92284332(-)$1	217	88	125	11.6344
GUCUGCAUUACACAGCCCCUGGCUUCCUAUGCAUGUA	chr16:50629862-50630128(+)$1	266	118	155	10.4806
gagguugcagugagccgagaucgugccauuacacucc	chr14:34904786-34905015(-)$1	229	95	132	10.0721
gcaugguggcacacgacuguagucucagcuacucaug	chr17:58319724-58319933(-)$1	209	3	40	11.2548

#DB
((...((((((..((((.(((((((((((((..((.(	chr3:171905336-171905650(+)$1	1	139	176	9.2621
(.(((.((.(((.((((....)))).))).))))).)	chr5:140105697-140105930(+)$1	1	75	112	12.4810
(((....(((((.((((....)).)))))))..))))	chr2:85546235-85546449(-)$1	1	64	101	10.6450
(((....(((((.((((....)).)))))))..))))	chr2:85546249-85546464(-)$1	1	79	116	10.6450
((((.(((((..((((......))))..))))).)))	chr3:53272776-53273043(-)$1	1	194	231	10.4983
((..(((((((..(((.....)))))))))).)).))	chr14:31644429-31644694(-)$1	1	109	146	11.0444
(((((((.((..(((((...))))).)))))))))((	chr17:57915201-57915472(+)$1	1	111	148	9.4297
((.(((((.((.(((((....).)))).))))))).)	chr1:8829460-8829714(-)$1	1	10	47	9.8953
((..(((((....((((....))))...)))))..))	chr17:58319690-58319924(-)$1	1	132	169	12.0126
(((...((((...((((....)))).))))....)))	chr12:27074506-27074752(-)$1	1	203	240	12.6699
(.(((.((.(((.((((....)))).))).))))).)	chr5:140105676-140105897(+)$1	1	96	133	12.4810
..((((((((((((((......)))))..))))))))	chr17:73658210-73658484(-)$1	1	198	235	9.9836
(((((((.((((.(((.....)))))))...))))))	chr3:171523628-171523877(-)$1	1	83	120	10.9840
.(((((((((((((..(....)..)))))))...)))	chr9:134295967-134296228(+)$1	1	15	52	10.6196
(((..((((((((((.....))))))).)))...)))	chr6:16646110-16646349(-)$1	1	91	128	9.4581
(((((((((((((..(....)..)).)))))))....	chr13:111548063-111548331(-)$1	1	107	144	9.6247
(((.(((((....((((....)))).))))).)))))	chr16:457185-457440(+)$1	1	57	94	12.2883
(((((((.((((.(((.....)))))))...))))))	chr3:171523677-171523889(-)$1	1	95	132	10.9840
(.((((.((.((.((((......)))).)).)).)))	chr22:38006659-38006920(+)$1	1	79	116	9.3653
((((..(((.((.((......)))))))..)))))))	chr3:185817093-185817303(-)$1	1	80	117	9.4021
(((...(((((...(((...((((.(((..((.((((	chr1:202741743-202741996(-)$1	1	62	99	8.4272
(((.(((((((((((((....))...))))..)))))	chr21:46289845-46290153(-)$1	1	181	218	11.8602
(.((((.(((((.((((...)))))))))))))))))	chr2:216279114-216279368(-)$1	1	106	143	10.3135
(((((..((((...(((...)))...)))).)))))(	chr11:65207570-65207800(+)$1	1	13	50	11.2197
((((..(((.((.((......)))))))..)))))))	chr3:185817056-185817293(-)$1	1	70	107	9.4021
)(((..((((((...(((...)))...)))))).)))	chrX:132742051-132742310(-)$1	1	94	131	11.7830
((((((.((.(((((((....)))).)))))..))))	chr13:51179414-51179688(+)$1	1	112	149	10.5917
.(.((((((...(((((....)))))..)))))))))	chr8:121822600-121822852(-)$1	1	103	140	9.8657
(((.((((.(((..(......)..))).))))))).(	chr8:17760819-17761108(-)$1	1	130	167	9.4761
(((.(((((((..((((....)))).))))))).)))	chr20:17941976-17942229(-)$1	1	105	142	14.3243
((...(.((((...(((....)))..)))).)...))	chr14:23779491-23779743(+)$1	1	190	227	13.0108
((...((((((..((((...(((((((((.(((((((	chr9:37258601-37258851(+)$1	1	55	92	9.9191
(((((.(((((((..((....)).))))))).))).)	chr14:34904754-34904986(-)$1	1	188	225	12.3475
(((((..((((...(((...))).)))).)))))).)	chr2:235907429-235907676(+)$1	1	90	127	11.4818
(((((((.((((.((((....))))))))..))))))	chrX:133013479-133013756(-)$1	1	8	45	12.3813
((((.((((((.(.(((...))).).)))))))))))	chr17:15414483-15414761(-)$1	1	76	113	10.7086
.(((((((.(((.((((....))))...)))))))))	chr15:99254245-99254486(+)$1	1	12	49	12.9151
(((..(.(..(..((((.((((.((((.(((.((((.	chr10:35095661-35095907(-)$1	1	67	104	8.2079
(((((..((((...(((....))).)))).)))))))	chr21:16404933-16405180(-)$1	1	89	126	12.9928
(.((.(((((((.((((....)).))))))))).)))	chr7:92284077-92284315(-)$1	1	71	108	11.6344
((..(((.((((.........)))).))).))).).)	chr1:44736103-44736337(-)$1	1	73	110	8.8885
(((((..((.(((..((....))..))).))..))))	chr9:134363483-134363745(+)$1	1	98	135	10.3923
....(((((((..((((...)))))))))))((((((	chr12:69640534-69640802(+)$1	1	110	147	8.8034
(....(((((((.((((....)).)))))))))))))	chr17:7411145-7411393(+)$1	1	80	117	11.1651
.(((.(((.(((((((.....))))..)))))).)))	chr2:138749659-138749921(+)$1	1	145	182	10.8075
((((..(((.(((((((....)).))))).))).)))	chr2:118852834-118853092(+)$1	1	90	127	10.8006
((((.(((.((...(((....)))....)).))))))	chr16:24747336-24747575(+)$1	1	1	38	12.2189
(((.(((((((((((......))).)).)))))))))	chr16:81525689-81525939(+)$1	1	93	130	9.5086
((.(.((.((((.((((....))))..)))).)).).	chr8:17766069-17766339(-)$1	1	115	152	11.0347
((.((((((((...((((...)))).)))))).))))	chr16:23653183-23653435(+)$1	1	99	136	10.5957
((..(((..((((((((....).))))))))))..))	chr8:22878691-22878949(-)$1	1	18	55	11.5098
(.(((((((((...(((...)))...))))))))).)	chr12:46752578-46752831(-)$1	1	77	114	13.4513
(.((.(((((((.((((....)).))))))))).)))	chr7:92284115-92284332(-)$1	1	88	125	11.6344
((((((((.....((((...))))....))))).).)	chr16:50629862-50630128(+)$1	1	118	155	10.4806
(((..((.((((.((((....)).)))))).))))).	chr14:34904786-34905015(-)$1	1	95	132	10.0721
.(((((((((....(((....)))...))))).))))	chr17:58319724-58319933(-)$1	1	3	40	11.2548

#PSSM
d : 0.26	c : 0.17	b : 0.10	f : 0.10	g : 0.10	e : 0.07	[ : 0.05	: : 0.05	i : 0.03	! : 0.01	
d : 0.24	[ : 0.12	g : 0.12	c : 0.12	f : 0.10	b : 0.08	e : 0.07	i : 0.03	! : 0.01	a : 0.01	: : 0.01	# : 0.01	
d : 0.24	c : 0.12	g : 0.12	f : 0.08	! : 0.07	[ : 0.07	e : 0.07	" : 0.05	b : 0.05	i : 0.03	: : 0.01	# : 0.01	a : 0.01	
d : 0.14	! : 0.12	g : 0.12	" : 0.08	c : 0.08	f : 0.08	[ : 0.08	e : 0.07	# : 0.05	b : 0.05	i : 0.03	: : 0.01	a : 0.01	
g : 0.21	[ : 0.12	! : 0.12	" : 0.08	c : 0.08	e : 0.08	d : 0.08	f : 0.07	# : 0.05	i : 0.03	b : 0.01	
g : 0.23	! : 0.14	f : 0.12	e : 0.10	c : 0.08	d : 0.07	[ : 0.05	# : 0.03	" : 0.03	i : 0.03	a : 0.03	b : 0.03	
g : 0.24	c : 0.14	f : 0.12	e : 0.12	[ : 0.08	b : 0.07	! : 0.07	d : 0.05	# : 0.03	i : 0.03	
g : 0.19	e : 0.17	f : 0.12	[ : 0.12	d : 0.10	c : 0.10	b : 0.08	i : 0.03	a : 0.01	! : 0.01	
g : 0.19	d : 0.19	e : 0.14	f : 0.12	[ : 0.12	b : 0.07	c : 0.05	i : 0.03	! : 0.03	$ : 0.01	
g : 0.21	d : 0.19	f : 0.10	e : 0.10	[ : 0.10	c : 0.08	b : 0.05	# : 0.03	i : 0.03	" : 0.01	! : 0.01	$ : 0.01	
g : 0.21	d : 0.17	c : 0.12	b : 0.10	f : 0.08	e : 0.08	# : 0.05	! : 0.03	" : 0.03	i : 0.03	a : 0.01	$ : 0.01	
" : 0.17	! : 0.14	c : 0.12	d : 0.12	g : 0.12	e : 0.08	b : 0.08	# : 0.05	[ : 0.03	f : 0.01	$ : 0.01	
[ : 0.30	" : 0.17	! : 0.12	d : 0.07	e : 0.07	g : 0.07	# : 0.05	c : 0.05	b : 0.01	a : 0.01	r : 0.01	$ : 0.01	
d : 0.37	" : 0.16	b : 0.14	c : 0.07	e : 0.07	! : 0.07	g : 0.05	[ : 0.01	r : 0.01	# : 0.01	
d : 0.39	c : 0.23	b : 0.14	e : 0.07	! : 0.07	g : 0.03	" : 0.01	a : 0.01	r : 0.01	
d : 0.37	c : 0.23	b : 0.17	o : 0.07	e : 0.05	! : 0.01	n : 0.01	a : 0.01	r : 0.01	g : 0.01	
d : 0.32	b : 0.17	c : 0.17	o : 0.10	n : 0.08	a : 0.05	e : 0.03	m : 0.01	r : 0.01	
m : 0.51	l : 0.14	o : 0.12	n : 0.08	[ : 0.03	" : 0.03	c : 0.01	r : 0.01	d : 0.01	
m : 0.51	l : 0.17	o : 0.12	n : 0.08	" : 0.03	= : 0.01	d : 0.01	r : 0.01	
m : 0.51	l : 0.17	o : 0.12	n : 0.08	" : 0.03	= : 0.01	d : 0.01	r : 0.01	
m : 0.49	o : 0.12	d : 0.08	n : 0.07	c : 0.07	l : 0.03	= : 0.01	e : 0.01	g : 0.01	a : 0.01	i : 0.01	r : 0.01	
d : 0.32	c : 0.23	b : 0.21	a : 0.07	o : 0.05	e : 0.03	= : 0.01	g : 0.01	2 : 0.01	i : 0.01	
d : 0.32	c : 0.23	b : 0.21	e : 0.05	2 : 0.05	] : 0.03	= : 0.01	g : 0.01	o : 0.01	i : 0.01	[ : 0.01	
d : 0.37	] : 0.17	c : 0.16	e : 0.05	2 : 0.05	b : 0.05	3 : 0.05	g : 0.03	= : 0.01	i : 0.01	
d : 0.35	b : 0.16	g : 0.10	e : 0.08	3 : 0.08	2 : 0.03	] : 0.03	4 : 0.03	= : 0.01	[ : 0.01	c : 0.01	i : 0.01	a : 0.01	
] : 0.19	d : 0.16	b : 0.12	3 : 0.12	g : 0.10	c : 0.08	e : 0.07	2 : 0.05	4 : 0.03	= : 0.01	i : 0.01	
d : 0.23	g : 0.19	c : 0.16	e : 0.10	2 : 0.07	3 : 0.07	b : 0.03	i : 0.03	f : 0.03	4 : 0.03	= : 0.01	
d : 0.19	g : 0.17	c : 0.16	e : 0.10	] : 0.08	2 : 0.05	f : 0.05	3 : 0.03	i : 0.03	4 : 0.03	= : 0.01	b : 0.01	[ : 0.01	
g : 0.19	e : 0.16	d : 0.16	c : 0.14	f : 0.08	b : 0.05	2 : 0.05	3 : 0.03	i : 0.03	] : 0.03	= : 0.01	! : 0.01	
g : 0.19	d : 0.14	e : 0.12	f : 0.10	] : 0.08	b : 0.08	c : 0.07	2 : 0.05	i : 0.03	3 : 0.03	= : 0.01	! : 0.01	[ : 0.01	
g : 0.21	e : 0.14	c : 0.12	f : 0.10	b : 0.08	] : 0.08	d : 0.08	i : 0.03	3 : 0.03	2 : 0.03	= : 0.01	4 : 0.01	
g : 0.21	f : 0.12	e : 0.10	b : 0.08	2 : 0.08	c : 0.08	] : 0.07	d : 0.07	i : 0.03	3 : 0.03	! : 0.01	4 : 0.01	a : 0.01	[ : 0.01	
g : 0.23	c : 0.16	e : 0.10	f : 0.10	2 : 0.07	b : 0.07	d : 0.07	3 : 0.05	i : 0.03	] : 0.03	! : 0.01	4 : 0.01	[ : 0.01	
] : 0.17	g : 0.16	d : 0.14	c : 0.10	f : 0.10	b : 0.08	e : 0.05	3 : 0.05	2 : 0.03	4 : 0.03	i : 0.03	
d : 0.21	g : 0.16	c : 0.12	f : 0.12	b : 0.08	e : 0.08	a : 0.05	] : 0.03	2 : 0.03	i : 0.03	4 : 0.01	3 : 0.01	
d : 0.24	] : 0.14	g : 0.14	f : 0.10	e : 0.08	b : 0.08	i : 0.05	c : 0.05	[ : 0.01	4 : 0.01	: : 0.01	a : 0.01	
d : 0.23	f : 0.16	c : 0.16	g : 0.14	e : 0.08	b : 0.07	i : 0.05	2 : 0.03	4 : 0.01	F : 0.01	! : 0.01	

#score	609.258017674159
#seq	56
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_transcript_m1_run2.txt

#BEAR
[ddddvvvvvvvvvvvvvdddd]	chr7:99173310-99173565(+)$1	255	59	82	22.2852
eeeeeuuuuuuuuuuuueeeee3	chr11:962271-962584(+)$1	313	88	111	23.2133
dd[cccuuuuuuuuuuuuccc]d	chr2:188381603-188381851(-)$1	248	53	76	22.7150
hhhhhhttttttttttthhhhhh	chr1:19512935-19513179(-)$1	244	195	218	20.8897
hhhhhhttttttttttthhhhhh	chr10:64966949-64967243(-)$1	294	85	108	20.8897
d[ddddtttttttttttdddd33	chr2:100055432-100055697(-)$1	265	48	71	22.4565
bb[ccctttttttttttccc22b	chr7:151873384-151873696(-)$1	312	16	39	22.2944
geeeeettttttttttteeeee]	chr6:64422321-64422575(+)$1	254	152	175	23.5448
eeeyyyyyyyyyyyyyyyyeeee	chr14:73577497-73577782(+)$1	285	180	203	20.4296
ggggggtttttttttttgggggg	chr6:87965679-87966007(+)$1	328	161	184	22.7096
iiiiiitttttttttttiiiiii	chr2:63103124-63103384(+)$1	260	168	191	22.6567
ee[cccwwwwwwwwwwwwwwccc	chr6:87968008-87968226(+)$1	218	155	178	20.6966
ccc[bbwwwwwwwwwwwwwwbb]	chr17:78282753-78283012(+)$1	259	33	56	19.4174
:dddduuuuuuuuuuuudddd::	chr14:102452212-102452510(+)$1	298	86	109	19.5123
ee[cccvvvvvvvvvvvvvccc]	chrX:106045887-106046278(+)$1	391	51	74	22.6350
:eeeeettttttttttteeeee:	chr12:133634775-133635040(+)$1	265	13	36	21.7149
eeeeeuuuuuuuuuuuueeeee:	chr8:121671966-121672198(-)$1	232	181	204	22.4097
dddcccuuuuuuuuuuuuccc22	chr2:44690569-44690833(+)$1	264	199	222	22.4440
cc[ccctttttttttttccc]cc	chr19:57327166-57327405(-)$1	239	155	178	23.3564
[eeeeettttttttttteeeee]	chr2:91823406-91823669(-)$1	263	186	209	23.6054
!!ddddtttttttttttdddd]b	chr11:65267725-65267947(+)$1	222	117	140	22.3357
eeeewwwwwwwwwwwwwweeeee	chr16:20696236-20696500(+)$1	264	53	76	21.2855
cccccvvvvvvvvvvvvvccc]c	chrX:20267411-20267640(-)$1	229	63	86	22.6787
ffffffvvvvvvvvvvvvvffff	chr12:2094037-2094298(-)$1	261	78	101	21.2022
ff[ccctttttttttttccc]ff	chr11:2673203-2673459(-)$1	256	86	109	23.0572
eee[bbwwwwwwwwwwwwwwbb]	chr17:55532972-55533235(+)$1	263	95	118	19.7490
ii[cccuuuuuuuuuuuuccc]i	chr11:65267629-65267838(+)$1	209	53	76	22.9929
fffffftttttttttttffffff	chrX:20268653-20268915(-)$1	262	120	143	21.9052
eee[bbtttttttttttbb]eee	chr10:5772657-5772934(+)$1	277	196	219	22.5811
ffffffuuuuuuuuuuuufffff	chr4:151814136-151814402(-)$1	266	167	190	21.6370
eeeeeuuuuuuuuuuuueeeeeB	chr6:56503966-56504246(-)$1	280	38	61	22.3134
=====wwwwwwwwwwwwww====	chr16:30792789-30793045(-)$1	256	62	85	21.0115
gggggwwwwwwwwwwwwwwgggg	chr6:2078975-2079229(-)$1	254	171	194	20.9696
eeeeeuuuuuuuuuuuueeeee:	chr1:46073091-46073344(+)$1	253	117	140	22.4097
:eeeeettttttttttteeeee:	chr16:2813505-2813764(+)$1	259	22	45	21.7149
ccc[bbtttttttttttbb]ccc	chr8:13098737-13098967(-)$1	230	81	104	22.2163
======ttttttttttt======	chr13:41451471-41451782(-)$1	311	204	227	22.8741
ffffffvvvvvvvvvvvvvffff	chr1:214794055-214794289(+)$1	234	57	80	21.2022
:eeeeettttttttttteeeee:	chr9:94019896-94020154(-)$1	258	229	252	21.7149
[ddddvvvvvvvvvvvvvdddd]	chr11:10875767-10875995(-)$1	228	164	187	22.2852
:eeeeettttttttttteeeeed	chr4:151836659-151836919(-)$1	260	19	42	22.2864
[dddduuuuuuuuuuuudddd]c	chr8:128846014-128846433(+)$1	419	228	251	22.3206
cccyyyyyyyyyyyyyyyycccc	chr14:75265326-75265591(+)$1	265	57	80	20.0449
h"""bbtttttttttttbb22hh	chr15:90750498-90750786(+)$1	288	58	81	21.0564
eeeyyyyyyyyyyyyyyyyeeee	chr2:64224427-64224687(-)$1	260	170	193	20.4296
dddccctttttttttttccc]dd	chr17:45037556-45037786(+)$1	230	37	60	22.9057
[eeeeettttttttttteeeee]	chr15:41576129-41576428(+)$1	299	259	282	23.6054
c!!bbuuuuuuuuuuuubb22cc	chr13:51131412-51131637(+)$1	225	117	140	21.4939
eeeevvvvvvvvvvvvveeeee]	chr1:203766493-203766724(+)$1	231	147	170	22.6753
f!!ccctttttttttttccc22f	chr17:66421572-66421813(+)$1	241	201	224	22.9311
!ddddattttttttttta]dddd	chr7:64439626-64439904(-)$1	278	23	46	22.6902
[ddddvvvvvvvvvvvvvdddd]	chr7:65804529-65804812(+)$1	283	104	127	22.2852
eeeeeuuuuuuuuuuuueeeee:	chr4:187629222-187629469(-)$1	247	221	244	22.4097
eeeewwwwwwwwwwwwwweeeee	chr4:69925938-69926180(+)$1	242	185	208	21.2855
:eeeeettttttttttteeeee:	chr16:2813457-2813705(+)$1	248	70	93	21.7149
ccbbvvvvvvvvvvvvvbb]ccc	chr3:196641991-196642405(+)$1	414	235	258	20.9101
eeeevvvvvvvvvvvvveeeee]	chr11:78263831-78264084(-)$1	253	14	37	22.6753
hhhhhhttttttttttthhhhhh	chr10:77580985-77581238(+)$1	253	122	145	20.8897
c:cccuuuuuuuuuuuucccccc	chr3:99568517-99568751(-)$1	234	143	166	21.7483
fffffwwwwwwwwwwwwwwffff	chr2:232326575-232326825(-)$1	250	206	229	20.2469
"""ccctttttttttttccc22c	chr3:172111481-172111742(+)$1	261	17	40	22.7637
e[ddddwwwwwwwwwwwwwwddd	chr3:133480481-133480701(+)$1	220	45	68	19.7700
eeeeeuuuuuuuuuuuueeeee:	chr3:42678283-42678489(+)$1	206	33	56	22.4097
dddccctttttttttttccc22d	chr1:225170917-225171187(+)$1	270	217	240	22.7202
hhhhhhttttttttttthhhhhh	chr11:2670710-2670988(-)$1	278	251	274	20.8897
fffffftttttttttttffffff	chr17:17061795-17062058(+)$1	263	160	183	21.9052
ddd[bbtttttttttttbb333d	chr17:14295109-14295358(+)$1	249	207	230	22.0455
eeeevvvvvvvvvvvvveeeee3	chr22:29938766-29939034(-)$1	268	68	91	22.5894
)))ccctttttttttttccc333	chr3:49752995-49753248(+)$1	253	92	115	21.7829
ffffffuuuuuuuuuuuufffff	chrX:73318308-73318652(-)$1	344	314	337	21.6370
c!!cccuuuuuuuuuuuuccccc	chr2:188401806-188402060(+)$1	254	208	231	22.9505

#otherMatches

#Seq PSSM
AUCAAUCCAGGACAGUAUUUGAA	chr7:99173310-99173565(+)$1	255	59	82	22.2852
UGGGAGGUUUUUAUAGGUUUCAG	chr11:962271-962584(+)$1	313	88	111	23.2133
gacgagccacagacaaaacuccu	chr2:188381603-188381851(-)$1	248	53	76	22.7150
AGGAGUGUUCUCAGCAGAUUCCU	chr1:19512935-19513179(-)$1	244	195	218	20.8897
UUUUGGCCUCUACAUCAUCAGAA	chr10:64966949-64967243(-)$1	294	85	108	20.8897
AAGGAAACAGAAUGGAAUUCCGC	chr2:100055432-100055697(-)$1	265	48	71	22.4565
GUUUGCCUCCUUUCAUAGCACCG	chr7:151873384-151873696(-)$1	312	16	39	22.2944
ACUUCAGAAAGCAAAGAUGGAGA	chr6:64422321-64422575(+)$1	254	152	175	23.5448
CUUGUCUGAAACCUACUCUGAGG	chr14:73577497-73577782(+)$1	285	180	203	20.4296
AGUACUCCUCCUGAAAAAGUGCU	chr6:87965679-87966007(+)$1	328	161	184	22.7096
gaccaucccuaagucauaugguc	chr2:63103124-63103384(+)$1	260	168	191	22.6567
UUUCUGUUAUAAGUGGUCCUCAG	chr6:87968008-87968226(+)$1	218	155	178	20.6966
CCGGGAUUUCUCUUAACUCUUUG	chr17:78282753-78283012(+)$1	259	33	56	19.4174
CGAGAUGUUUAGGAUUUUCUCCA	chr14:102452212-102452510(+)$1	298	86	109	19.5123
UUGGGGGAAGUGUGGAAAACCUG	chrX:106045887-106046278(+)$1	391	51	74	22.6350
CAGUGAAAAAUUAAGUCUCACUA	chr12:133634775-133635040(+)$1	265	13	36	21.7149
aaggcaugaaucauauagccuua	chr8:121671966-121672198(-)$1	232	181	204	22.4097
UACAGUGAACAAAAGAGAACUUA	chr2:44690569-44690833(+)$1	264	199	222	22.4440
GAAUCUAAUGAGAAGGGAGAAUC	chr19:57327166-57327405(-)$1	239	155	178	23.3564
uuauuugaaaauaagaGAAaugc	chr2:91823406-91823669(-)$1	263	186	209	23.6054
ACUAGCAUUAAUUGACAGCUGAC	chr11:65267725-65267947(+)$1	222	117	140	22.3357
UGUGAAGAAGAAAGGAGGUACAG	chr16:20696236-20696500(+)$1	264	53	76	21.2855
aggaugcaaacaaacuagaucac	chrX:20267411-20267640(-)$1	229	63	86	22.6787
aagauuuuuuuuuuuuuuuaauc	chr12:2094037-2094298(-)$1	261	78	101	21.2022
UGAGAAACACAGGUCCCUUCCCA	chr11:2673203-2673459(-)$1	256	86	109	23.0572
CGGGGAACUGUAGUUUUGAAUUG	chr17:55532972-55533235(+)$1	263	95	118	19.7490
UUGGAAGAGUUAGAAGAAUUUGG	chr11:65267629-65267838(+)$1	209	53	76	22.9929
uagccuaccauauuaaaagguua	chrX:20268653-20268915(-)$1	262	120	143	21.9052
GGAUUUUCCUUAGUUAUGACUCC	chr10:5772657-5772934(+)$1	277	196	219	22.5811
AUUCCUGCUUUUGACCAAAGGAA	chr4:151814136-151814402(-)$1	266	167	190	21.6370
UUAGGUUUAUAUAUUUUUCUAAC	chr6:56503966-56504246(-)$1	280	38	61	22.3134
UCCCCCAAAAAAAUUACAUGGGG	chr16:30792789-30793045(-)$1	256	62	85	21.0115
aaguuaacaaacauuuauaaacu	chr6:2078975-2079229(-)$1	254	171	194	20.9696
CCUCUGAAGAGGCAAAAGGAGGA	chr1:46073091-46073344(+)$1	253	117	140	22.4097
AGGCCCAAACUCCACCGGGGCCA	chr16:2813505-2813764(+)$1	259	22	45	21.7149
AACUUCUAUACAUGUGUGAUGUU	chr8:13098737-13098967(-)$1	230	81	104	22.2163
gggucccaacagcaacaggauuu	chr13:41451471-41451782(-)$1	311	204	227	22.8741
CUAAUUCUCAAAGAACUCCAAUU	chr1:214794055-214794289(+)$1	234	57	80	21.2022
auggaacaaaauagaaauuccag	chr9:94019896-94020154(-)$1	258	229	252	21.7149
gugcaaaagauguagugaugcgg	chr11:10875767-10875995(-)$1	228	164	187	22.2852
AACUGUUUUUUGCUUCUGCAGUG	chr4:151836659-151836919(-)$1	260	19	42	22.2864
cuuguaucucacuuuaagCAAAG	chr8:128846014-128846433(+)$1	419	228	251	22.3206
UGGGAGUAGAGAGAGAAUACCAC	chr14:75265326-75265591(+)$1	265	57	80	20.0449
GUAGGAGACAGAAGCCAUCAUUU	chr15:90750498-90750786(+)$1	288	58	81	21.0564
aacaaguaauaagauaaaaguug	chr2:64224427-64224687(-)$1	260	170	193	20.4296
gcacuuaagaacaugaaaagaug	chr17:45037556-45037786(+)$1	230	37	60	22.9057
GCGCAGGAACCUGCGAGUUGCGG	chr15:41576129-41576428(+)$1	299	259	282	23.6054
ugggcacuaaaacuaaagcaaau	chr13:51131412-51131637(+)$1	225	117	140	21.4939
CAUAAAGAGAAUGAGUGUAUGUA	chr1:203766493-203766724(+)$1	231	147	170	22.6753
GUCCUGAACACACAGCCCAGCCC	chr17:66421572-66421813(+)$1	241	201	224	22.9311
CAGAGCAGAACAUAAGAGAUUCU	chr7:64439626-64439904(-)$1	278	23	46	22.6902
auccugggauacgaagaggggaa	chr7:65804529-65804812(+)$1	283	104	127	22.2852
UCCCAGAGAUCUAGGCGUGGGAG	chr4:187629222-187629469(-)$1	247	221	244	22.4097
ggcuaagccauuauaugaagcca	chr4:69925938-69926180(+)$1	242	185	208	21.2855
AGGCCCAAACUCCACCGGGGCCA	chr16:2813457-2813705(+)$1	248	70	93	21.7149
uugcaacuugagcacuagcugag	chr3:196641991-196642405(+)$1	414	235	258	20.9101
ucugaaagagcuaaaagcagaac	chr11:78263831-78264084(-)$1	253	14	37	22.6753
uugguucaacacacacaaaucaa	chr10:77580985-77581238(+)$1	253	122	145	20.8897
AAGCUAAAGGACAUGAAAGCCAU	chr3:99568517-99568751(-)$1	234	143	166	21.7483
CUGUCACUCCAGGCAAAAAGGCA	chr2:232326575-232326825(-)$1	250	206	229	20.2469
uacauggaaauaaaaaacauacu	chr3:172111481-172111742(+)$1	261	17	40	22.7637
AUUUCAAAAGAGCAUAGUACUGG	chr3:133480481-133480701(+)$1	220	45	68	19.7700
CAUGCUUAUAAAUCACCGCAUGA	chr3:42678283-42678489(+)$1	206	33	56	22.4097
ccacagccaacauaauacugaau	chr1:225170917-225171187(+)$1	270	217	240	22.7202
ccucagacaagcaaaaacugagg	chr11:2670710-2670988(-)$1	278	251	274	20.8897
CGUGGGGCCUGCUGACACCCACG	chr17:17061795-17062058(+)$1	263	160	183	21.9052
uggccaaucaagaauacuguacc	chr17:14295109-14295358(+)$1	249	207	230	22.0455
CUGAUCGUAUUUUCCUUUCAGGC	chr22:29938766-29939034(-)$1	268	68	91	22.5894
AACAGCGUCCUCAAUCAGCUCAA	chr3:49752995-49753248(+)$1	253	92	115	21.7829
ggggcggccgggcagagacgcuc	chrX:73318308-73318652(-)$1	344	314	337	21.6370
cuaagcaaaaagaacaaagcugg	chr2:188401806-188402060(+)$1	254	208	231	22.9505

#DB
.((((.............)))).	chr7:99173310-99173565(+)$1	1	59	82	22.2852
(((((............))))).	chr11:962271-962584(+)$1	1	88	111	23.2133
((.(((............))).)	chr2:188381603-188381851(-)$1	1	53	76	22.7150
((((((...........))))))	chr1:19512935-19513179(-)$1	1	195	218	20.8897
((((((...........))))))	chr10:64966949-64967243(-)$1	1	85	108	20.8897
(.((((...........))))..	chr2:100055432-100055697(-)$1	1	48	71	22.4565
((.(((...........)))..)	chr7:151873384-151873696(-)$1	1	16	39	22.2944
((((((...........))))).	chr6:64422321-64422575(+)$1	1	152	175	23.5448
(((................))))	chr14:73577497-73577782(+)$1	1	180	203	20.4296
((((((...........))))))	chr6:87965679-87966007(+)$1	1	161	184	22.7096
((((((...........))))))	chr2:63103124-63103384(+)$1	1	168	191	22.6567
((.(((..............)))	chr6:87968008-87968226(+)$1	1	155	178	20.6966
(((.((..............)).	chr17:78282753-78283012(+)$1	1	33	56	19.4174
.((((............))))..	chr14:102452212-102452510(+)$1	1	86	109	19.5123
((.(((.............))).	chrX:106045887-106046278(+)$1	1	51	74	22.6350
.(((((...........))))).	chr12:133634775-133635040(+)$1	1	13	36	21.7149
(((((............))))).	chr8:121671966-121672198(-)$1	1	181	204	22.4097
((((((............)))..	chr2:44690569-44690833(+)$1	1	199	222	22.4440
((.(((...........))).))	chr19:57327166-57327405(-)$1	1	155	178	23.3564
.(((((...........))))).	chr2:91823406-91823669(-)$1	1	186	209	23.6054
..((((...........)))).)	chr11:65267725-65267947(+)$1	1	117	140	22.3357
((((..............)))))	chr16:20696236-20696500(+)$1	1	53	76	21.2855
(((((.............))).)	chrX:20267411-20267640(-)$1	1	63	86	22.6787
((((((.............))))	chr12:2094037-2094298(-)$1	1	78	101	21.2022
((.(((...........))).))	chr11:2673203-2673459(-)$1	1	86	109	23.0572
(((.((..............)).	chr17:55532972-55533235(+)$1	1	95	118	19.7490
((.(((............))).)	chr11:65267629-65267838(+)$1	1	53	76	22.9929
((((((...........))))))	chrX:20268653-20268915(-)$1	1	120	143	21.9052
(((.((...........)).)))	chr10:5772657-5772934(+)$1	1	196	219	22.5811
((((((............)))))	chr4:151814136-151814402(-)$1	1	167	190	21.6370
(((((............)))))(	chr6:56503966-56504246(-)$1	1	38	61	22.3134
(((((..............))))	chr16:30792789-30793045(-)$1	1	62	85	21.0115
(((((..............))))	chr6:2078975-2079229(-)$1	1	171	194	20.9696
(((((............))))).	chr1:46073091-46073344(+)$1	1	117	140	22.4097
.(((((...........))))).	chr16:2813505-2813764(+)$1	1	22	45	21.7149
(((.((...........)).)))	chr8:13098737-13098967(-)$1	1	81	104	22.2163
((((((...........))))))	chr13:41451471-41451782(-)$1	1	204	227	22.8741
((((((.............))))	chr1:214794055-214794289(+)$1	1	57	80	21.2022
.(((((...........))))).	chr9:94019896-94020154(-)$1	1	229	252	21.7149
.((((.............)))).	chr11:10875767-10875995(-)$1	1	164	187	22.2852
.(((((...........)))))(	chr4:151836659-151836919(-)$1	1	19	42	22.2864
.((((............)))).)	chr8:128846014-128846433(+)$1	1	228	251	22.3206
(((................))))	chr14:75265326-75265591(+)$1	1	57	80	20.0449
(...((...........))..))	chr15:90750498-90750786(+)$1	1	58	81	21.0564
(((................))))	chr2:64224427-64224687(-)$1	1	170	193	20.4296
((((((...........))).))	chr17:45037556-45037786(+)$1	1	37	60	22.9057
.(((((...........))))).	chr15:41576129-41576428(+)$1	1	259	282	23.6054
(..((............))..))	chr13:51131412-51131637(+)$1	1	117	140	21.4939
((((.............))))).	chr1:203766493-203766724(+)$1	1	147	170	22.6753
(..(((...........)))..)	chr17:66421572-66421813(+)$1	1	201	224	22.9311
.(((((...........).))))	chr7:64439626-64439904(-)$1	1	23	46	22.6902
.((((.............)))).	chr7:65804529-65804812(+)$1	1	104	127	22.2852
(((((............))))).	chr4:187629222-187629469(-)$1	1	221	244	22.4097
((((..............)))))	chr4:69925938-69926180(+)$1	1	185	208	21.2855
.(((((...........))))).	chr16:2813457-2813705(+)$1	1	70	93	21.7149
((((.............)).)))	chr3:196641991-196642405(+)$1	1	235	258	20.9101
((((.............))))).	chr11:78263831-78264084(-)$1	1	14	37	22.6753
((((((...........))))))	chr10:77580985-77581238(+)$1	1	122	145	20.8897
).(((............)))(((	chr3:99568517-99568751(-)$1	1	143	166	21.7483
(((((..............))))	chr2:232326575-232326825(-)$1	1	206	229	20.2469
...(((...........)))..)	chr3:172111481-172111742(+)$1	1	17	40	22.7637
(.((((..............)))	chr3:133480481-133480701(+)$1	1	45	68	19.7700
(((((............))))).	chr3:42678283-42678489(+)$1	1	33	56	22.4097
((((((...........)))..)	chr1:225170917-225171187(+)$1	1	217	240	22.7202
((((((...........))))))	chr11:2670710-2670988(-)$1	1	251	274	20.8897
((((((...........))))))	chr17:17061795-17062058(+)$1	1	160	183	21.9052
(((.((...........))...)	chr17:14295109-14295358(+)$1	1	207	230	22.0455
((((.............))))).	chr22:29938766-29939034(-)$1	1	68	91	22.5894
...(((...........)))...	chr3:49752995-49753248(+)$1	1	92	115	21.7829
((((((............)))))	chrX:73318308-73318652(-)$1	1	314	337	21.6370
(..(((............)))))	chr2:188401806-188402060(+)$1	1	208	231	22.9505

#PSSM
e : 0.25	c : 0.12	f : 0.12	[ : 0.08	d : 0.08	: : 0.08	h : 0.07	g : 0.04	i : 0.02	! : 0.02	= : 0.02	b : 0.01	" : 0.01	) : 0.01	
e : 0.35	d : 0.15	f : 0.11	c : 0.08	h : 0.05	! : 0.05	[ : 0.02	g : 0.02	i : 0.02	= : 0.02	" : 0.02	b : 0.01	: : 0.01	) : 0.01	
e : 0.32	d : 0.18	[ : 0.09	f : 0.09	c : 0.07	h : 0.05	! : 0.04	g : 0.02	= : 0.02	" : 0.02	i : 0.01	b : 0.01	) : 0.01	
e : 0.26	c : 0.22	d : 0.12	f : 0.09	[ : 0.07	h : 0.05	y : 0.04	g : 0.02	= : 0.02	b : 0.02	i : 0.01	" : 0.01	
c : 0.22	e : 0.19	d : 0.12	b : 0.09	f : 0.09	h : 0.05	v : 0.05	y : 0.04	g : 0.02	w : 0.02	= : 0.02	i : 0.01	
c : 0.19	u : 0.14	v : 0.11	e : 0.11	b : 0.08	f : 0.08	w : 0.07	h : 0.05	d : 0.04	y : 0.04	g : 0.01	i : 0.01	= : 0.01	a : 0.01	
t : 0.45	u : 0.22	v : 0.15	w : 0.12	y : 0.04	
t : 0.45	u : 0.22	v : 0.15	w : 0.12	y : 0.04	
t : 0.45	u : 0.22	v : 0.15	w : 0.12	y : 0.04	
t : 0.45	u : 0.22	v : 0.15	w : 0.12	y : 0.04	
t : 0.45	u : 0.22	v : 0.15	w : 0.12	y : 0.04	
t : 0.45	u : 0.22	v : 0.15	w : 0.12	y : 0.04	
t : 0.45	u : 0.22	v : 0.15	w : 0.12	y : 0.04	
t : 0.45	u : 0.22	v : 0.15	w : 0.12	y : 0.04	
t : 0.45	u : 0.22	v : 0.15	w : 0.12	y : 0.04	
t : 0.45	u : 0.22	v : 0.15	w : 0.12	y : 0.04	
t : 0.45	u : 0.22	v : 0.15	w : 0.12	y : 0.04	
e : 0.23	c : 0.12	w : 0.12	v : 0.09	u : 0.08	b : 0.08	h : 0.05	d : 0.05	y : 0.04	f : 0.02	g : 0.01	i : 0.01	= : 0.01	a : 0.01	
e : 0.26	c : 0.19	d : 0.09	w : 0.09	b : 0.08	h : 0.05	f : 0.05	y : 0.04	v : 0.04	g : 0.01	i : 0.01	= : 0.01	] : 0.01	
e : 0.29	c : 0.22	d : 0.11	f : 0.09	h : 0.05	w : 0.05	] : 0.04	g : 0.02	= : 0.02	2 : 0.02	i : 0.01	3 : 0.01	
e : 0.30	c : 0.15	d : 0.12	f : 0.09	2 : 0.08	h : 0.05	] : 0.04	g : 0.02	b : 0.02	= : 0.02	3 : 0.02	i : 0.01	
e : 0.30	c : 0.12	f : 0.11	d : 0.08	] : 0.07	h : 0.07	2 : 0.07	3 : 0.04	g : 0.02	b : 0.02	= : 0.02	i : 0.01	: : 0.01	
] : 0.15	c : 0.15	: : 0.12	f : 0.12	d : 0.09	h : 0.07	e : 0.07	3 : 0.05	b : 0.02	g : 0.02	i : 0.02	= : 0.02	2 : 0.01	B : 0.01	

#score	1556.0852671584216
#seq	71
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF756RYJ_AARS_UTR_m1_run1.txt

#BEAR
ddd"""ccc####bb[a[bbnnnnnbb]a]bb]ccc22dd	chr3:128211718-128211966(+)$1	248	68	108	49.7779
ddd"""ccc####bb[a[bbnnnnnbb]a]bb]ccc22dd	chr3:128211660-128211918(+)$1	258	126	166	49.7779

#otherMatches

#Seq PSSM
AGUAGAGCUGGGAGCAGGGCGAGGUGCGCGGCAGGCGGGC	chr3:128211718-128211966(+)$1	248	68	108	49.7779
AGUAGAGCUGGGAGCAGGGCGAGGUGCGCGGCAGGCGGGC	chr3:128211660-128211918(+)$1	258	126	166	49.7779

#DB
(((...(((....((.(.((.....)).).)).)))..))	chr3:128211718-128211966(+)$1	1	68	108	49.7779
(((...(((....((.(.((.....)).).)).)))..))	chr3:128211660-128211918(+)$1	1	126	166	49.7779

#PSSM
d : 1.00	
d : 1.00	
d : 1.00	
" : 1.00	
" : 1.00	
" : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
# : 1.00	
# : 1.00	
# : 1.00	
# : 1.00	
b : 1.00	
b : 1.00	
[ : 1.00	
a : 1.00	
[ : 1.00	
b : 1.00	
b : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
b : 1.00	
b : 1.00	
] : 1.00	
a : 1.00	
] : 1.00	
b : 1.00	
b : 1.00	
] : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
2 : 1.00	
2 : 1.00	
d : 1.00	
d : 1.00	

#score	99.55596773279999
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_transcript_m2_run2.txt

#BEAR
cc"""ccc!!cccmmmmccccccccc22g	chr2:54855975-54856191(+)$1	216	156	185	14.2235
ccc[ccc[cccbbmmmmbb]cccccc]cc	chr7:5427547-5427748(-)$1	201	79	108	11.4020
f:ggggggg[cccmmmmccc4444ggggg	chr14:56114642-56114934(+)$1	292	232	261	13.3457
!!dddd"""bbccclllccc333bb22dd	chr6:56464837-56465117(-)$1	280	124	153	11.4407
Beeeeeccc[cccmmmmccc22ccc]eee	chr3:58139172-58139428(+)$1	256	113	142	12.7451
ggggg[ccc[cccmmmmccc]ccc22ggg	chr3:184041635-184041863(+)$1	228	142	171	13.5789
bggggggg[cccnnnnnccc333gggggg	chr2:54858098-54858403(+)$1	305	95	124	11.2232
d"""ccc!!cccooooooccc22ccc333	chr19:47424500-47424808(+)$1	308	79	108	12.6987
iiiii[a"""bboooooobb333aiiiii	chr16:11931694-11931990(-)$1	296	13	42	11.9516
d"""ccc!!cccooooooccc22ccc444	chr1:16259503-16259740(+)$1	237	185	214	12.4044
eeeee!!ccc!!ammmma22ccc]eeeee	chr16:72830855-72831079(-)$1	224	6	35	10.3645
eeee!!a!!ddddmmmmdddd]a22eeee	chr21:47678778-47679106(-)$1	328	81	110	11.2512
ccc[ccc"""ccclllccc4444ccc]cc	chr9:114145463-114145703(-)$1	240	4	33	13.2277
eeeeebba[ddddmmmmdddd]a333bb]	chr17:27013602-27013870(+)$1	268	51	80	10.2712
ccc!!dddd[cccmmmmccc]dddd333c	chr16:72822071-72822327(-)$1	256	194	223	13.0460
======$$$$$bbmmmmbb333=======	chr17:15974644-15974896(-)$1	252	13	42	12.9393
ggggg[cccddddmmmmdddd4444ccc]	chr12:133372633-133372896(-)$1	263	187	216	11.9718
""ccc!!ccccccmmmmccc>>>>>>>>>	chr3:52727632-52727891(+)$1	259	154	183	11.9316
ccc####bb!!ccclllccc22bbccccc	chr16:30748399-30748673(+)$1	274	139	168	11.1497
eee"""ccc[cccmmmmccc333ccc22e	chr1:39876485-39876769(+)$1	284	169	198	15.2491
a[ccc"""eeeeemmmmeeeee]ccc]a]	chr19:47423936-47424188(+)$1	252	85	114	10.4505
#ggggggg!!cccmmmmccc22ggggggg	chr11:14497279-14497536(-)$1	257	34	63	14.3573
"""ccc"""ddddmmmmdddd333ccc33	chr2:32800201-32800478(+)$1	277	66	95	13.5315
cc!!iiiiiiiiimmmmiiiiiiiii22c	chr8:87447760-87447993(+)$1	233	65	94	12.0796
ggeeeee"""cccmmmmccc333eeeee]	chr2:230653445-230653703(-)$1	258	139	168	14.7118
fffffbb"""cccmmmmcccbb]ffffff	chr17:8390650-8390883(-)$1	233	127	156	11.4562
dd[bb[ddddcccmmmmccc333dddd]b	chr17:78309893-78310170(+)$1	277	76	105	12.7879
ee[==========mmmm==========ee	chr1:160264473-160264706(-)$1	233	40	69	12.6851
"""eeeee!!cccmmmmccc22eeeee44	chr8:17847272-17847574(+)$1	302	96	125	13.6415
dd!!==========lll==========]d	chr5:37001056-37001277(+)$1	221	175	204	11.2915
:iiiiiiiiicccmmmmccc333iiiiii	chr3:47734629-47734891(-)$1	262	85	114	14.1565
cc"""ccc!!ccclllcccccc333cccb	chr17:65899840-65900129(+)$1	289	53	82	12.6691
)))))ccc!!cccmmmmccc22ccc]ccc	chr14:102449834-102450046(+)$1	212	8	37	12.0784
dddddddd!!cccmmmmcccdddd333dd	chr1:52900983-52901242(-)$1	259	194	223	12.1859
[eeeee[ccc[bbmmmmbb22ccceeeee	chr17:78351468-78351693(+)$1	225	96	125	10.3443
ee[bb[ccc[cccmmmmccc]ccc]bb33	chr17:78316991-78317223(+)$1	232	20	49	13.0936
"""ccc[bb[cccmmmmcccbb22cccff	chr17:7405794-7406042(+)$1	248	87	116	12.4512
d[eeeee[cccooooooccc333eeeee3	chr8:48743081-48743357(-)$1	276	35	64	11.3838
''ggggggg[cccmmmmccc]gggggggd	chr2:96965022-96965265(-)$1	243	61	90	12.2025
iiiiiiii!!cccmmmmccciiiiiiiii	chr3:121414090-121414325(-)$1	235	122	151	14.1737
bcccbb####cccmmmmccc333bb]ccc	chr14:102550926-102551186(-)$1	260	88	117	14.1646
eee!!bb"""cccmmmmccc4444bb333	chr16:27517147-27517390(-)$1	243	141	170	14.8321
dddd!!a!!ddddmmmmdddd22a]dddd	chr6:7583039-7583274(+)$1	235	203	232	11.5052
$$$$$ddddacccmmmmccc]a]ddddcc	chr9:139349962-139350262(-)$1	300	221	250	11.8132
ii[eeeee"""aooooooa4444eeeeei	chr8:48701618-48701849(-)$1	231	10	39	10.5521
dddd!!ccc[cccmmmmccc]ccc]dddd	chrX:53600753-53600988(-)$1	235	174	203	13.1273
iiiiiiii[ddddmmmmddddiiiiiiii	chrX:53426423-53426751(-)$1	328	135	164	11.5153
ee"""dddd!!ccclllccc]dddd333e	chr2:11338533-11338812(-)$1	279	195	224	11.0154
d[dddd####cccmmmmccc333dddd]d	chr11:62284993-62285210(-)$1	217	175	204	14.5483
[a[ccc[bb[cccmmmmcccbb]ccc]ab	chr19:5657178-5657454(+)$1	276	146	175	12.5130
d[ccc[a"""cccmmmmccc333a]cccd	chr2:32724755-32724963(+)$1	208	94	123	15.8236
eeee!!ccc!!bbmmmmbb]ccc333eee	chr17:8396076-8396325(-)$1	249	6	35	11.6147

#otherMatches

#Seq PSSM
CAAGAGCUUUGCCAGCUGGCGGCUGAGCG	chr2:54855975-54856191(+)$1	216	156	185	14.2235
GCCCGGGACGCCGUGGCCGUGCGCCCUGG	chr7:5427547-5427748(-)$1	201	79	108	11.4020
UGACAUAAAAGGAUUUCUCUGUAAUUUGU	chr14:56114642-56114934(+)$1	292	232	261	13.3457
UAAAGAGAAACUCCAAGGGAUAUGUGAUC	chr6:56464837-56465117(-)$1	280	124	153	11.4407
CGUGGGGCCACUUGGUGAAGGAGGCGCCC	chr3:58139172-58139428(+)$1	256	113	142	12.7451
UGGGUUCUAAAUCUAAUGGUCUGGUUGCC	chr3:184041635-184041863(+)$1	228	142	171	13.5789
GACUUGGUGGCCAUUGAGGCAAAGCUGAG	chr2:54858098-54858403(+)$1	305	95	124	11.2232
UUCAGCUUGUAGCACUCACUGAUGGCGCU	chr19:47424500-47424808(+)$1	308	79	108	12.6987
UUCUUAGAUUCAAAAACAUGCCACAGGAA	chr16:11931694-11931990(-)$1	296	13	42	11.9516
UAAAGAAGUGGAAGUCACUCUUGUUCGGA	chr1:16259503-16259740(+)$1	237	185	214	12.4044
GGCUCAGGUUCAGGUCCCACAGCAGAGCC	chr16:72830855-72831079(-)$1	224	6	35	10.3645
GCUGAUUGCCCUGUUUCUAGGAAUGCAGU	chr21:47678778-47679106(-)$1	328	81	110	11.2512
UAUGUGAAGUAGAAAGUCUUUUGUCAGAU	chr9:114145463-114145703(-)$1	240	4	33	13.2277
CAACACUCAUCCCACCAGGGACGCCCAGA	chr17:27013602-27013870(+)$1	268	51	80	10.2712
CUGUCGCAGGCCCUGAUGGGGCUGUCCCC	chr16:72822071-72822327(-)$1	256	194	223	13.0460
CCAUUACCAAAGGAAAACCAUAUGAUGGC	chr17:15974644-15974896(-)$1	252	13	42	12.9393
UGCAGAGCAGGGAGCAGUCCCUCGAUGCC	chr12:133372633-133372896(-)$1	263	187	216	11.9718
AGACAGUGACCAGGAAACUGUUGAUGAAG	chr3:52727632-52727891(+)$1	259	154	183	11.9316
CUCGUGUCAGUGAGCGUCUUCGUGGAGCC	chr16:30748399-30748673(+)$1	274	139	168	11.1497
GUAGCAACAAGUGGUAACACAGAUGUAAU	chr1:39876485-39876769(+)$1	284	169	198	15.2491
CCCUUACAUUAAUUUUGGUUAACAAGAGA	chr19:47423936-47424188(+)$1	252	85	114	10.4505
UUGACUUUUAGAUCCCAAUUGUAGAGUCA	chr11:14497279-14497536(-)$1	257	34	63	14.3573
AAUUGCUUCGGGCCAUUGCUUCUUGUGCU	chr2:32800201-32800478(+)$1	277	66	95	13.5315
ACUCAGAUGAUAUUAUGAUAUUAUUUUUG	chr8:87447760-87447993(+)$1	233	65	94	12.0796
AAUCAUGACAGGAAACAUCCCAACAUGGC	chr2:230653445-230653703(-)$1	258	139	168	14.7118
CUCCAGGUAUGUGCCUUCACCCAUGGAGU	chr17:8390650-8390883(-)$1	233	127	156	11.4562
AGCUGAAGGUGUUUGUGGACCUGGCCUCC	chr17:78309893-78310170(+)$1	277	76	105	12.7879
CUGUUCCUUCCCUCUGUAGGGAAGGGAGG	chr1:160264473-160264706(-)$1	233	40	69	12.6851
AAACUUUUGAGAAGAACUUUGAAAGAGAA	chr8:17847272-17847574(+)$1	302	96	125	13.6415
UCCUCUAGAGUAACUCAGUUACUCUAGUG	chr5:37001056-37001277(+)$1	221	175	204	11.2915
UUUUUUCUUUUUCUAGUGAACCUAAAGAA	chr3:47734629-47734891(-)$1	262	85	114	14.1565
UGAAUUCUUAGGUUACACCGGAUGACAUC	chr17:65899840-65900129(+)$1	289	53	82	12.6691
ACCCUGCCCACAGGAAGCUGCAGGCCCGC	chr14:102449834-102450046(+)$1	212	8	37	12.0784
UCAUCAGAAUGUGUAAGUACUCUGCCUGU	chr1:52900983-52901242(-)$1	259	194	223	12.1859
GUCCCAACGGCCAUCCUUGCUCCGUGGGA	chr17:78351468-78351693(+)$1	225	96	125	10.3443
CGACUGAUCGACCCUCAGGUGGAUGAGAG	chr17:78316991-78317223(+)$1	232	20	49	13.0936
UGAAGUACGACGCGACUGUGCGGAACUCC	chr17:7405794-7406042(+)$1	248	87	116	12.4512
UCUUCUUUGGUUCUGGUGCUUAUAGGAAA	chr8:48743081-48743357(-)$1	276	35	64	11.3838
CAGCUCCAGAUCAUGGUUGAGUUGGGGUC	chr2:96965022-96965265(-)$1	243	61	90	12.2025
CUUUCUUCCAAUGCCAGCAUGAAGGAAGA	chr3:121414090-121414325(-)$1	235	122	151	14.1737
CCCGACGAUAUUACUAAUGAGGAGUACGG	chr14:102550926-102551186(-)$1	260	88	117	14.1646
AUCGAGGAGGUCCGGAUGGAAAACCCAAA	chr16:27517147-27517390(-)$1	243	141	170	14.8321
GCUGGAGGAUUCUACCAGGGAGACACAGU	chr6:7583039-7583274(+)$1	235	203	232	11.5052
UGCGCGGCUGCUGCCCUCAGACAAGCCCC	chr9:139349962-139350262(-)$1	300	221	250	11.8132
GAUAUUUGAUUGCCUAAACUUUGUAAAUU	chr8:48701618-48701849(-)$1	231	10	39	10.5521
ACUAUCCUUCGUCUUCUGGCAGAGUUGGU	chrX:53600753-53600988(-)$1	235	174	203	13.1273
UCAGUUGGAUUUUGAAAAGAACCAACUGA	chrX:53426423-53426751(-)$1	328	135	164	11.5153
AGUAUGUAUAAUAGAAUCUAAAUAUGAUU	chr2:11338533-11338812(-)$1	279	195	224	11.0154
UUUCUCAGGACCAAAGGUGGAAGGAGGUG	chr11:62284993-62285210(-)$1	217	175	204	14.5483
AGCCUCGGAAGUCAAGAGACUCAGAGUCC	chr19:5657178-5657454(+)$1	276	146	175	12.5130
GUCCGGGUGAUGCAAAAGCAGUUUGUGGC	chr2:32724755-32724963(+)$1	208	94	123	15.8236
AGAUGACGACCUGGGAACAAUUGAAAGUC	chr17:8396076-8396325(-)$1	249	6	35	11.6147

#DB
((...(((..(((....)))))))))..)	chr2:54855975-54856191(+)$1	1	156	185	14.2235
(((.(((.(((((....)).)))))).))	chr7:5427547-5427748(-)$1	1	79	108	11.4020
).(((((((.(((....)))....)))))	chr14:56114642-56114934(+)$1	1	232	261	13.3457
..((((...(((((...)))...))..))	chr6:56464837-56465117(-)$1	1	124	153	11.4407
(((((((((.(((....)))..))).)))	chr3:58139172-58139428(+)$1	1	113	142	12.7451
(((((.(((.(((....))).)))..)))	chr3:184041635-184041863(+)$1	1	142	171	13.5789
)(((((((.(((.....)))...))))))	chr2:54858098-54858403(+)$1	1	95	124	11.2232
(...(((..(((......)))..)))...	chr19:47424500-47424808(+)$1	1	79	108	12.6987
(((((.(...((......))...))))))	chr16:11931694-11931990(-)$1	1	13	42	11.9516
(...(((..(((......)))..)))...	chr1:16259503-16259740(+)$1	1	185	214	12.4044
(((((..(((..(....)..))).)))))	chr16:72830855-72831079(-)$1	1	6	35	10.3645
((((..(..((((....)))).)..))))	chr21:47678778-47679106(-)$1	1	81	110	11.2512
(((.(((...(((...)))....))).))	chr9:114145463-114145703(-)$1	1	4	33	13.2277
((((((((.((((....)))).)...)).	chr17:27013602-27013870(+)$1	1	51	80	10.2712
(((..((((.(((....))).))))...)	chr16:72822071-72822327(-)$1	1	194	223	13.0460
((((((.....((....))...)))))))	chr17:15974644-15974896(-)$1	1	13	42	12.9393
(((((.(((((((....))))....))).	chr12:133372633-133372896(-)$1	1	187	216	11.9718
..(((..((((((....))).........	chr3:52727632-52727891(+)$1	1	154	183	11.9316
(((....((..(((...)))..)))))))	chr16:30748399-30748673(+)$1	1	139	168	11.1497
(((...(((.(((....)))...)))..)	chr1:39876485-39876769(+)$1	1	169	198	15.2491
(.(((...(((((....))))).))).).	chr19:47423936-47424188(+)$1	1	85	114	10.4505
.(((((((..(((....)))..)))))))	chr11:14497279-14497536(-)$1	1	34	63	14.3573
...(((...((((....))))...)))..	chr2:32800201-32800478(+)$1	1	66	95	13.5315
((..(((((((((....)))))))))..)	chr8:87447760-87447993(+)$1	1	65	94	12.0796
(((((((...(((....)))...))))).	chr2:230653445-230653703(-)$1	1	139	168	14.7118
(((((((...(((....))))).))))))	chr17:8390650-8390883(-)$1	1	127	156	11.4562
((.((.(((((((....)))...)))).)	chr17:78309893-78310170(+)$1	1	76	105	12.7879
((.((((((((((....))))))))))))	chr1:160264473-160264706(-)$1	1	40	69	12.6851
...(((((..(((....)))..)))))..	chr8:17847272-17847574(+)$1	1	96	125	13.6415
((..((((((((((...)))))))))).)	chr5:37001056-37001277(+)$1	1	175	204	11.2915
.((((((((((((....)))...))))))	chr3:47734629-47734891(-)$1	1	85	114	14.1565
((...(((..(((...))))))...))))	chr17:65899840-65900129(+)$1	1	53	82	12.6691
.....(((..(((....)))..))).)))	chr14:102449834-102450046(+)$1	1	8	37	12.0784
((((((((..(((....)))))))...))	chr1:52900983-52901242(-)$1	1	194	223	12.1859
.(((((.(((.((....))..))))))))	chr17:78351468-78351693(+)$1	1	96	125	10.3443
((.((.(((.(((....))).))).))..	chr17:78316991-78317223(+)$1	1	20	49	13.0936
...(((.((.(((....)))))..)))))	chr17:7405794-7406042(+)$1	1	87	116	12.4512
(.(((((.(((......)))...))))).	chr8:48743081-48743357(-)$1	1	35	64	11.3838
..(((((((.(((....))).))))))))	chr2:96965022-96965265(-)$1	1	61	90	12.2025
((((((((..(((....))))))))))))	chr3:121414090-121414325(-)$1	1	122	151	14.1737
((((((....(((....)))...)).)))	chr14:102550926-102551186(-)$1	1	88	117	14.1646
(((..((...(((....)))....))...	chr16:27517147-27517390(-)$1	1	141	170	14.8321
((((..(..((((....))))..).))))	chr6:7583039-7583274(+)$1	1	203	232	11.5052
.....((((((((....))).).))))))	chr9:139349962-139350262(-)$1	1	221	250	11.8132
((.(((((...(......)....))))))	chr8:48701618-48701849(-)$1	1	10	39	10.5521
((((..(((.(((....))).))).))))	chrX:53600753-53600988(-)$1	1	174	203	13.1273
((((((((.((((....))))))))))))	chrX:53426423-53426751(-)$1	1	135	164	11.5153
((...((((..(((...))).))))...)	chr2:11338533-11338812(-)$1	1	195	224	11.0154
(.((((....(((....)))...)))).)	chr11:62284993-62285210(-)$1	1	175	204	14.5483
.(.(((.((.(((....))))).))).))	chr19:5657178-5657454(+)$1	1	146	175	12.5130
(.(((.(...(((....)))...).))))	chr2:32724755-32724963(+)$1	1	94	123	15.8236
((((..(((..((....)).)))...)))	chr17:8396076-8396325(-)$1	1	6	35	11.6147

#PSSM
d : 0.19	e : 0.17	c : 0.13	i : 0.07	" : 0.07	g : 0.05	f : 0.03	b : 0.03	[ : 0.03	! : 0.01	B : 0.01	= : 0.01	a : 0.01	# : 0.01	: : 0.01	) : 0.01	' : 0.01	$ : 0.01	
e : 0.21	c : 0.15	" : 0.11	g : 0.09	i : 0.09	d : 0.09	[ : 0.07	: : 0.01	! : 0.01	= : 0.01	f : 0.01	) : 0.01	' : 0.01	$ : 0.01	a : 0.01	
e : 0.19	" : 0.15	c : 0.15	g : 0.11	d : 0.09	[ : 0.09	i : 0.07	! : 0.03	= : 0.01	f : 0.01	) : 0.01	$ : 0.01	
e : 0.19	c : 0.13	" : 0.11	g : 0.11	d : 0.09	i : 0.07	! : 0.07	[ : 0.03	= : 0.03	b : 0.03	# : 0.01	f : 0.01	) : 0.01	$ : 0.01	
c : 0.19	e : 0.15	g : 0.11	! : 0.11	i : 0.09	" : 0.07	d : 0.05	= : 0.05	b : 0.05	# : 0.01	f : 0.01	) : 0.01	$ : 0.01	
c : 0.19	d : 0.11	e : 0.11	[ : 0.11	! : 0.11	g : 0.07	b : 0.07	i : 0.07	= : 0.05	" : 0.03	# : 0.01	
c : 0.26	d : 0.09	g : 0.07	a : 0.07	i : 0.07	e : 0.07	" : 0.05	b : 0.05	# : 0.05	[ : 0.05	! : 0.03	= : 0.03	$ : 0.01	
c : 0.24	" : 0.17	d : 0.09	g : 0.07	! : 0.07	i : 0.07	b : 0.05	[ : 0.03	= : 0.03	e : 0.03	# : 0.03	a : 0.01	$ : 0.01	
c : 0.23	! : 0.21	" : 0.17	d : 0.07	[ : 0.05	b : 0.05	g : 0.03	i : 0.03	= : 0.03	# : 0.03	$ : 0.01	e : 0.01	
! : 0.19	[ : 0.19	c : 0.15	" : 0.13	d : 0.13	i : 0.03	= : 0.03	# : 0.03	b : 0.01	$ : 0.01	e : 0.01	a : 0.01	
c : 0.63	d : 0.11	! : 0.07	b : 0.03	= : 0.03	$ : 0.01	e : 0.01	i : 0.01	[ : 0.01	" : 0.01	
c : 0.65	d : 0.11	b : 0.09	= : 0.03	! : 0.01	e : 0.01	i : 0.01	o : 0.01	a : 0.01	
c : 0.59	d : 0.11	o : 0.09	b : 0.07	= : 0.03	n : 0.01	a : 0.01	e : 0.01	i : 0.01	
m : 0.76	o : 0.09	c : 0.05	l : 0.03	n : 0.01	= : 0.01	
m : 0.76	l : 0.11	o : 0.09	n : 0.01	
m : 0.76	l : 0.11	o : 0.09	n : 0.01	
m : 0.76	o : 0.09	l : 0.07	c : 0.03	n : 0.01	
c : 0.63	d : 0.11	b : 0.07	o : 0.07	= : 0.03	a : 0.01	e : 0.01	i : 0.01	
c : 0.67	d : 0.11	b : 0.09	= : 0.03	2 : 0.01	e : 0.01	i : 0.01	a : 0.01	
c : 0.65	d : 0.11	] : 0.03	2 : 0.03	4 : 0.03	= : 0.03	b : 0.01	3 : 0.01	e : 0.01	i : 0.01	
3 : 0.23	c : 0.13	] : 0.13	d : 0.13	2 : 0.11	4 : 0.07	b : 0.05	i : 0.03	= : 0.03	> : 0.01	e : 0.01	
3 : 0.24	c : 0.17	2 : 0.15	4 : 0.09	d : 0.05	i : 0.05	b : 0.05	] : 0.03	= : 0.03	> : 0.01	e : 0.01	g : 0.01	a : 0.01	
3 : 0.24	c : 0.19	4 : 0.09	2 : 0.07	] : 0.07	d : 0.05	= : 0.05	i : 0.05	a : 0.03	g : 0.03	> : 0.01	b : 0.01	e : 0.01	
c : 0.26	d : 0.11	3 : 0.07	i : 0.07	e : 0.07	4 : 0.05	b : 0.05	g : 0.05	a : 0.05	= : 0.05	2 : 0.03	] : 0.01	> : 0.01	f : 0.01	
c : 0.24	e : 0.11	i : 0.09	d : 0.09	g : 0.07	3 : 0.07	] : 0.07	b : 0.05	= : 0.05	2 : 0.03	4 : 0.01	> : 0.01	f : 0.01	
c : 0.26	e : 0.13	i : 0.09	3 : 0.09	d : 0.09	g : 0.07	] : 0.05	= : 0.05	2 : 0.03	b : 0.03	> : 0.01	f : 0.01	
e : 0.17	c : 0.15	g : 0.09	3 : 0.09	d : 0.09	2 : 0.07	] : 0.07	i : 0.07	= : 0.05	b : 0.03	4 : 0.01	> : 0.01	f : 0.01	
c : 0.17	e : 0.17	3 : 0.11	g : 0.09	d : 0.07	i : 0.07	2 : 0.05	] : 0.05	4 : 0.03	a : 0.03	f : 0.03	b : 0.01	= : 0.01	> : 0.01	
c : 0.15	d : 0.15	e : 0.15	g : 0.09	3 : 0.09	i : 0.09	] : 0.07	b : 0.05	4 : 0.03	f : 0.03	= : 0.01	> : 0.01	

#score	651.1750435265328
#seq	52
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_CDS_m2_run2.txt

#BEAR
cceeeee==========!!ccclllccc]==========G	chr16:28884848-28885119(+)$1	271	142	182	13.6806
cc[ccc[ffffff[eeeeemmmmeeeee333ffffffccc	chr11:43428638-43428866(+)$1	228	126	166	11.6469
fffff================lll================	chr5:95099109-95099381(+)$1	272	207	247	16.2741
c"""==========[cccmmmmccc]==========]ccc	chr15:90138523-90138757(+)$1	234	192	232	15.9042
d"""ggggggg[ccc[ddddmmmmdddd]ccc]ggggggg	chr3:185639757-185640021(-)$1	264	66	106	13.5216
!==========[bb[cccnnnnncccbb22==========	chr3:41277119-41277381(+)$1	262	79	119	15.9228
cc[bb[a[===========oooooo===========]a]b	chr19:54969181-54969397(+)$1	216	148	188	17.8148
b!!iiiiiiiii"""bboooooobb22iiiiiiiii22bb	chr1:24973468-24973691(+)$1	223	31	71	15.2240
:a[iiiiiiiii!!eeeeennnnneeeee4444iiiiiii	chrX:47061659-47061902(+)$1	243	20	60	14.5506
!!ccc[bb[ccc!!ddddoooooodddd22ccc22bbccc	chr6:30859674-30859937(+)$1	263	180	220	15.3515
c!!ffffff[eeeee"""aooooooa333eeeee]fffff	chr15:91456096-91456321(+)$1	225	89	129	13.3307
dd####dddd!!bb[cccooooooccc]bb22dddd333d	chr2:61558316-61558554(-)$1	238	137	177	12.4392
[ffffff####ddddrrrrrrrrrdddd333ffffffbb]	chr16:1797102-1797361(+)$1	259	144	184	11.8644
==========[eeeeeqqqqqqqqeeeee]==========	chr7:1539125-1539361(-)$1	236	17	57	14.1867
==========####ddddmmmmdddd==========]ccc	chr17:47115428-47115706(+)$1	278	206	246	15.7416
!bb[a[a####cccddddoooooodddd]ccc4444a]ab	chr3:47046574-47046829(+)$1	255	41	81	15.5792
ccbb==========[a!!bblllbb22a]==========4	chr16:2160523-2160757(-)$1	234	74	114	15.0602
fiiiiiiiiibb[ddddddddllldddd]ddddbb22iii	chr1:113232361-113232564(+)$1	203	147	187	12.1934
eeeee[ccc[ccc[ccc[annnnna]ccccccccceeeee	chr17:34869383-34869668(-)$1	285	152	192	11.7094
bb[ggggggg[ddddssssssssssdddd333ggggggg]	chr6:31935632-31935876(+)$1	244	154	194	12.3594
cc!!ggggggg[a[eeeeeccclllccc]eeeee]a]ggg	chr22:23523030-23523309(+)$1	279	106	146	12.7745
gggggggeeeee!!a[bboooooobb]a22eeeee]gggg	chr8:103424306-103424538(-)$1	232	50	90	13.9954
$$$$$ccc[iiiiiiiiiooooooiiiiiiiiicccgggg	chr3:183883889-183884154(+)$1	265	86	126	15.8255
"ccca[ccc[ccc[ddddooooooddddcccccc]a>>>>	chr21:33738834-33739079(-)$1	245	109	149	15.3347
!===========[a"""annnnna333a]===========	chr21:46907276-46907521(+)$1	245	41	81	17.1385
mddddiiiiiiiiiaddddmmmmdddd22a]iiiiiiiii	chr4:151935650-151935980(-)$1	330	205	245	12.8600
==================ssssssssss============	chr15:50923512-50923787(-)$1	275	216	256	15.5414
ccggggggg[adddd!!bboooooobb333dddd]a333g	chr17:79864621-79864866(-)$1	245	58	98	15.0367
"""bb[bb!!bb[eeeeeooooooeeeee]bb]bb]bb33	chrX:153178627-153178944(-)$1	317	21	61	13.8039
cc[ggggggg"""eeeeeooooooeeeee333ggggggg2	chr12:116421151-116421406(-)$1	255	17	57	17.3331
cc####bb[gggggggrrrrrrrrrgggggggbbccc333	chrX:41048461-41048719(+)$1	258	111	151	12.6661
cc"""ccc[ccc[cccoooooocccccccccccc]a]bb]	chr12:57499150-57499464(-)$1	314	84	124	14.0869
gg[a!!ccc[ccc[ddddoooooodddd]cccccc]a]gg	chr17:3844812-3845049(-)$1	237	108	148	16.9767
==========bb!!bbssssssssssbb22bb]=======	chr2:74307524-74307799(+)$1	275	219	259	13.2655
=========="""eeeeeooooooeeeee4444=======	chr1:32792476-32792721(+)$1	245	10	50	18.8948
g[iiiiiiiii####eeeeellleeeee22iiiiiiiii3	chr2:220077909-220078149(-)$1	240	97	137	15.6667
d"""ffffff####ddddoooooodddd22ffffff]ddd	chr19:49601584-49601848(+)$1	264	203	243	14.9307
[a!!==========xxxxxxxxxxxxxxx==========2	chr8:145275433-145275677(+)$1	244	73	113	15.2482
ee[ccc[ccc[ffffffooooooffffffccc]ccc]eee	chr5:10390365-10390672(+)$1	307	132	172	12.3689
cc=============!!bbmmmmbb]=============]	chr3:176764986-176765244(-)$1	258	166	206	15.8088
cc[eeeee!!dddd[cccooooooccc]dddd333eeeee	chr11:17126621-17126953(-)$1	332	232	272	13.3020
ggggg!!a####ddddqqqqqqqqdddd333a22gggggg	chr3:195792354-195792572(-)$1	218	117	157	12.6456
gggggggbb!!iiiiiiiiiooooooiiiiiiiii22bb:	chr3:182559765-182560011(+)$1	246	69	109	13.3998
bggggggga[a[dddd[bboooooobb333dddd]a]a]g	chr19:55743342-55743564(-)$1	222	102	142	14.7458
eccc####ccc[eeeeeooooooeeeeeccc22ccc]eee	chr9:131004503-131004723(+)$1	220	87	127	13.3245
ccc"""ccc[ccc[ddddoooooodddd22ccc22ccc]c	chr1:1247296-1247563(-)$1	267	73	113	16.3977
cc[bb[ggggggg[ddddoooooodddd]ggggggg]bb]	chr15:41863692-41863950(+)$1	258	153	193	16.9418
ggggggg!!iiiiiiiiirrrrrrrrriiiiiiiii22gg	chr16:16149879-16150140(+)$1	261	149	189	14.5918
=========!!bb[cccnnnnnccc]bb333=========	chr22:21342196-21342420(+)$1	224	65	105	15.3976
:eeeee============mmmm============333eee	chr10:104018627-104018886(+)$1	259	39	79	13.2361
ggggggggggggg[ddddoooooodddd]ggggggg6666	chr1:71544238-71544484(-)$1	246	34	74	15.2376
ggccc[ccc[a"""ddddoooooodddd55555a]ccc]c	chr1:12302483-12302740(+)$1	257	214	254	13.1730

#otherMatches

#Seq PSSM
CAUAGCCCCAGGCUCAGAGGCCCAGGGCGCUGGGUCUGGU	chr16:28884848-28885119(+)$1	271	142	182	13.6806
GGUGAGUCAUUUACUUUAGACAUCUAAAACUUAAAUGCUU	chr11:43428638-43428866(+)$1	228	126	166	11.6469
CAGGAAAGGUAAGUUGAUUUGUUGUAAGUUAGUUUACUUU	chr5:95099109-95099381(+)$1	272	207	247	16.2741
CAGAAGUUACAUCCAGAUGGCAGUCCGGAUGUGGCUGGGG	chr15:90138523-90138757(+)$1	234	192	232	15.9042
UUUGUUCAGGAUGUAUGUAACAAUUUAUUUACCUUUUGAA	chr3:185639757-185640021(-)$1	264	66	106	13.5216
AUGUUUCUUUUGGCAGGAGGGGGUCCGCAUGGAAGAAAUA	chr3:41277119-41277381(+)$1	262	79	119	15.9228
UACGCCGAGAACUUGCCUGGCAAUGUGGGCGAGUUUACUG	chr19:54969181-54969397(+)$1	216	148	188	17.8148
AUUUUGCUGUUACAUGUUAAGUUACUUUGACAGCAAUUUU	chr1:24973468-24973691(+)$1	223	31	71	15.2240
UGUGGGGGGUGGUUCUAGGCAUUCCCUAGUUCUCCAUUCC	chrX:47061659-47061902(+)$1	243	20	60	14.5506
CGGGUCUGGCCAGGCUAUGACUAUGUGGGAUGGAGCAACC	chr6:30859674-30859937(+)$1	263	180	220	15.3515
ACAUUCACCAGGCGGUCCGGCUUUACAAUCUGCCAGGUGA	chr15:91456096-91456321(+)$1	225	89	129	13.3307
AUGCACUGUAAGUACCUCUCAACUGGGUUAAAUACAUUUG	chr2:61558316-61558554(-)$1	238	137	177	12.4392
UCACCCAGGAGAUGCGCAACGUCAGUAUAGGUGGGUGCCC	chr16:1797102-1797361(+)$1	259	144	184	11.8644
CGGGCAGCAGGCGGGUGUUCCCCAACCUGGCUGCUGCCCG	chr7:1539125-1539361(-)$1	236	17	57	14.1867
GGGCUUUGGCUCUCGGGGUCAGCCCCGCCAGGGCUCACCU	chr17:47115428-47115706(+)$1	278	206	246	15.7416
GGGUAGGGAAAGGCGAGGGGAGGGCUUCUGCUGACACGUC	chr3:47046574-47046829(+)$1	255	41	81	15.5792
CGCCAGCUACCUGUGGGAUCUGGGGGACGGUGGGUGGCUC	chr16:2160523-2160757(-)$1	234	74	114	15.0602
UACUUCCCAGCCACAGUGCUCUGGGAGCUGCUGGGACCUG	chr1:113232361-113232564(+)$1	203	147	187	12.1934
GAGCUGCCUUCUCCUGGCUGCCCAACCCAGAGAGGAGCUU	chr17:34869383-34869668(-)$1	285	152	192	11.7094
CCACCAAGGUGCUCCGGGUGAAUGGGGAGAAGAUCUUGGA	chr6:31935632-31935876(+)$1	244	154	194	12.3594
CCGGCCGCGCCAUGGUGGACCCGGUGGGCUUCGCGGAGGC	chr22:23523030-23523309(+)$1	279	106	146	12.7745
GAGUGGAGGACGAGAAGGAAAGCACCAUGACGUCCAUCCA	chr8:103424306-103424538(-)$1	232	50	90	13.9954
AUCUACAUUGGCUCUAUCAUGAAGGGUGGGGCCGUGGCUG	chr3:183883889-183884154(+)$1	265	86	126	15.8255
UGCCCCUGGUGUGCAAUAAGAGCAUGUUCACCCAAGCAUU	chr21:33738834-33739079(-)$1	245	109	149	15.3347
AGAAGGGACACAGGCCCCUACGUGUCUCGUGUGUCUCUUC	chr21:46907276-46907521(+)$1	245	41	81	17.1385
GUGUCCCUUCCCCGCCACCAACAGGUGAUGACGGGGGAGG	chr4:151935650-151935980(-)$1	330	205	245	12.8600
uauguauguauauguguguguauguguguauauguguaug	chr15:50923512-50923787(-)$1	275	216	256	15.5414
CCCCCGCCAACCUGCUCCCUCUCUUGGCUUGCAGUGCCCU	chr17:79864621-79864866(-)$1	245	58	98	15.0367
CAGCCGGCAGGCGGGCCGGAGGCGCGGCCAGCAGCAGGAG	chrX:153178627-153178944(-)$1	317	21	61	13.8039
UGCAGAAUAUCACUAAAGUCACCUCUUUGCAUGUAUUCUU	chr12:116421151-116421406(-)$1	255	17	57	17.3331
CAAUGAGCCAGACUUGGAAGACGAACAGGUUUGCUGUGAA	chrX:41048461-41048719(+)$1	258	111	151	12.6661
GUGAAAGCCUGGUGGACAUUUAUUCCCAGCUACAGCAGGA	chr12:57499150-57499464(-)$1	314	84	124	14.0869
CUGAGAGUGUGAUCGAGCGCUGUAGCUCAGUCCGCGUGGG	chr17:3844812-3845049(-)$1	237	108	148	16.9767
CACAGCUGUGCCUGGUUCCCCUUGCUGCAUGGCCACGGCU	chr2:74307524-74307799(+)$1	275	219	259	13.2655
GGAAGGGGAGAGUGGCUUAGUAACAGGCUUAUGUUCUCUU	chr1:32792476-32792721(+)$1	245	10	50	18.8948
CCAGGUGAAGGACCUUCCUGGAGCAGGGCCCCUUCGCUUU	chr2:220077909-220078149(-)$1	240	97	137	15.6667
UGAGAGCCUGGGUCUGGCACAAAGGUCAAAUAGGCUAGGU	chr19:49601584-49601848(+)$1	264	203	243	14.9307
UCAGAUGGAAGAUAAAAAGCCCUUUAUCCUGUCUUCCAUG	chr8:145275433-145275677(+)$1	244	73	113	15.2482
GUGUGCAUUCAUCAGCCUGGUGUGGUUGAGAGAGCAGAUA	chr5:10390365-10390672(+)$1	307	132	172	12.3689
CAUUAAGUUCUGUAAAGGCAAAUGUAUUACAGAGCUUAAU	chr3:176764986-176765244(-)$1	258	166	206	15.8088
GAAAAGGUAAUUAGCAUGUCUCCUCAUUCUAAAAAGCUUU	chr11:17126621-17126953(-)$1	332	232	272	13.3020
UGUCCCUCUGACUGGAAAACAGACUCUACAUGUAGGAUGG	chr3:195792354-195792572(-)$1	218	117	157	12.6456
UGUUUUUGUAAUGUGAAUUUUUUGAUAGAUUCAUGGGACG	chr3:182559765-182560011(+)$1	246	69	109	13.3998
CCCUGGCCCUCAGCCUCCAGGUGAAUGAAUGGGCGGUGUG	chr19:55743342-55743564(-)$1	222	102	142	14.7458
UGCUGAGAAUCUGUCCUGGUACAAGGAUGAUGAGGUGAGU	chr9:131004503-131004723(+)$1	220	87	127	13.3245
GGCUCUGUGACUGUGGAGUCCGUCCUCCUCCAGGCCGCCG	chr1:1247296-1247563(-)$1	267	73	113	16.3977
AUGAAGGAGUUUGACCAUCCACACGUGGCCAAACUUGUUG	chr15:41863692-41863950(+)$1	258	153	193	16.9418
UGCCUGGGAGCUGGCAUUCAAGGACAAGGUGCUGGCCAUC	chr16:16149879-16150140(+)$1	261	149	189	14.5918
CCUUUGGGUUUGACAGUUUCUCACUCUCUUUACUCAGGGG	chr22:21342196-21342420(+)$1	224	65	105	15.3976
AUCUUAACUGUUUUGGUAGGUUUGCCAAGAUGGUGGAUAA	chr10:104018627-104018886(+)$1	259	39	79	13.2361
uuaaaauguaaaauuuuacaaauuuaaauuuuuauaaauG	chr1:71544238-71544484(-)$1	246	34	74	15.2376
GAGGUGAAAACUGAGAGCCCUGGAGUUUGUAUUGAUUUGG	chr1:12302483-12302740(+)$1	257	214	254	13.1730

#DB
)))))))((((((((((..(((...))).)))))))))))	chr16:28884848-28885119(+)$1	1	142	182	13.6806
((.(((.((((((.(((((....)))))...)))))))))	chr11:43428638-43428866(+)$1	1	126	166	11.6469
)))))((((((((((((((((...))))))))))))))))	chr5:95099109-95099381(+)$1	1	207	247	16.2741
(...((((((((((.(((....))).)))))))))).)))	chr15:90138523-90138757(+)$1	1	192	232	15.9042
(...(((((((.(((.((((....)))).))).)))))))	chr3:185639757-185640021(-)$1	1	66	106	13.5216
.((((((((((.((.(((.....)))))..))))))))))	chr3:41277119-41277381(+)$1	1	79	119	15.9228
((.((.(.(((((((((((......))))))))))).).)	chr19:54969181-54969397(+)$1	1	148	188	17.8148
(..(((((((((...((......))..)))))))))..))	chr1:24973468-24973691(+)$1	1	31	71	15.2240
.(.(((((((((..(((((.....)))))....)))))))	chrX:47061659-47061902(+)$1	1	20	60	14.5506
..(((.((.(((..((((......))))..)))..)))))	chr6:30859674-30859937(+)$1	1	180	220	15.3515
(..((((((.(((((...(......)...))))).)))))	chr15:91456096-91456321(+)$1	1	89	129	13.3307
((....((((..((.(((......))).))..))))...)	chr2:61558316-61558554(-)$1	1	137	177	12.4392
.((((((....((((.........))))...)))))))).	chr16:1797102-1797361(+)$1	1	144	184	11.8644
((((((((((.(((((........))))).))))))))))	chr7:1539125-1539361(-)$1	1	17	57	14.1867
((((((((((....((((....)))))))))))))).)))	chr17:47115428-47115706(+)$1	1	206	246	15.7416
.((.(.(....(((((((......)))).)))....).))	chr3:47046574-47046829(+)$1	1	41	81	15.5792
((((((((((((((.(..((...))..).)))))))))).	chr16:2160523-2160757(-)$1	1	74	114	15.0602
((((((((((((.((((((((...)))).))))))..)))	chr1:113232361-113232564(+)$1	1	147	187	12.1934
(((((.(((.(((.(((.(.....).))))))))))))))	chr17:34869383-34869668(-)$1	1	152	192	11.7094
((.(((((((.((((..........))))...))))))).	chr6:31935632-31935876(+)$1	1	154	194	12.3594
((..(((((((.(.((((((((...))).))))).).)))	chr22:23523030-23523309(+)$1	1	106	146	12.7745
((((((((((((..(.((......)).)..))))).))))	chr8:103424306-103424538(-)$1	1	50	90	13.9954
.....(((.(((((((((......))))))))))))))))	chr3:183883889-183884154(+)$1	1	86	126	15.8255
.((((.(((.(((.((((......)))))))))).)....	chr21:33738834-33739079(-)$1	1	109	149	15.3347
.(((((((((((.(...(.....)...).)))))))))))	chr21:46907276-46907521(+)$1	1	41	81	17.1385
.))))((((((((((((((....))))..).)))))))))	chr4:151935650-151935980(-)$1	1	205	245	12.8600
((((((((((((((((((..........))))))))))))	chr15:50923512-50923787(-)$1	1	216	256	15.5414
(((((((((.(((((..((......))...)))).)...)	chr17:79864621-79864866(-)$1	1	58	98	15.0367
...((.((..((.(((((......))))).)).)).))..	chrX:153178627-153178944(-)$1	1	21	61	13.8039
((.(((((((...(((((......)))))...))))))).	chr12:116421151-116421406(-)$1	1	17	57	17.3331
((....((.(((((((.........))))))))))))...	chrX:41048461-41048719(+)$1	1	111	151	12.6661
((...(((.(((.(((......)))))))))))).).)).	chr12:57499150-57499464(-)$1	1	84	124	14.0869
((.(..(((.(((.((((......)))).)))))).).))	chr17:3844812-3845049(-)$1	1	108	148	16.9767
((((((((((((..((..........))..)).)))))))	chr2:74307524-74307799(+)$1	1	219	259	13.2655
((((((((((...(((((......)))))....)))))))	chr1:32792476-32792721(+)$1	1	10	50	18.8948
(.(((((((((....(((((...)))))..))))))))).	chr2:220077909-220078149(-)$1	1	97	137	15.6667
(...((((((....((((......))))..)))))).)))	chr19:49601584-49601848(+)$1	1	203	243	14.9307
.(..((((((((((...............)))))))))).	chr8:145275433-145275677(+)$1	1	73	113	15.2482
((.(((.(((.((((((......))))))))).))).)))	chr5:10390365-10390672(+)$1	1	132	172	12.3689
(((((((((((((((..((....)).))))))))))))).	chr3:176764986-176765244(-)$1	1	166	206	15.8088
((.(((((..((((.(((......))).))))...)))))	chr11:17126621-17126953(-)$1	1	232	272	13.3020
(((((..(....((((........))))...)..))))))	chr3:195792354-195792572(-)$1	1	117	157	12.6456
)))))))((..(((((((((......)))))))))..)).	chr3:182559765-182560011(+)$1	1	69	109	13.3998
(((((((((.(.((((.((......))...)))).).).)	chr19:55743342-55743564(-)$1	1	102	142	14.7458
((((....(((.(((((......))))))))..))).)))	chr9:131004503-131004723(+)$1	1	87	127	13.3245
(((...(((.(((.((((......))))..)))..))).)	chr1:1247296-1247563(-)$1	1	73	113	16.3977
((.((.(((((((.((((......)))).))))))).)).	chr15:41863692-41863950(+)$1	1	153	193	16.9418
(((((((..(((((((((.........)))))))))..))	chr16:16149879-16150140(+)$1	1	149	189	14.5918
(((((((((..((.(((.....))).))...)))))))))	chr22:21342196-21342420(+)$1	1	65	105	15.3976
.(((((((((((((((((....))))))))))))...)))	chr10:104018627-104018886(+)$1	1	39	79	13.2361
(((((((((((((.((((......)))).)))))))....	chr1:71544238-71544484(-)$1	1	34	74	15.2376
))(((.(((.(...((((......)))).....).))).)	chr1:12302483-12302740(+)$1	1	214	254	13.1730

#PSSM
c : 0.28	g : 0.15	= : 0.11	! : 0.07	d : 0.05	b : 0.05	e : 0.05	f : 0.03	: : 0.03	[ : 0.03	" : 0.03	$ : 0.01	m : 0.01	
c : 0.28	= : 0.15	g : 0.15	" : 0.07	! : 0.05	e : 0.05	f : 0.03	a : 0.03	d : 0.03	b : 0.03	i : 0.01	$ : 0.01	[ : 0.01	
[ : 0.17	= : 0.17	g : 0.13	" : 0.09	c : 0.09	! : 0.07	e : 0.05	f : 0.03	# : 0.03	b : 0.03	i : 0.03	$ : 0.01	d : 0.01	
= : 0.17	g : 0.17	c : 0.11	" : 0.09	e : 0.07	b : 0.07	i : 0.07	f : 0.05	# : 0.03	! : 0.03	[ : 0.01	$ : 0.01	d : 0.01	a : 0.01	
= : 0.23	g : 0.21	e : 0.07	c : 0.07	f : 0.07	i : 0.07	b : 0.05	# : 0.05	a : 0.03	" : 0.03	$ : 0.01	d : 0.01	! : 0.01	
= : 0.24	g : 0.19	[ : 0.15	i : 0.09	c : 0.07	e : 0.05	f : 0.05	# : 0.05	! : 0.03	" : 0.01	
= : 0.26	g : 0.21	c : 0.13	i : 0.09	b : 0.05	f : 0.05	e : 0.03	[ : 0.03	a : 0.03	d : 0.01	! : 0.01	# : 0.01	
= : 0.28	g : 0.15	c : 0.15	i : 0.09	b : 0.07	f : 0.05	# : 0.05	e : 0.03	[ : 0.01	d : 0.01	a : 0.01	! : 0.01	
= : 0.30	g : 0.13	c : 0.13	i : 0.09	[ : 0.07	f : 0.05	# : 0.05	! : 0.05	d : 0.01	e : 0.01	b : 0.01	a : 0.01	
= : 0.28	[ : 0.15	g : 0.13	i : 0.13	c : 0.07	! : 0.07	# : 0.05	f : 0.03	d : 0.01	e : 0.01	
= : 0.21	c : 0.13	i : 0.11	g : 0.09	# : 0.09	! : 0.05	[ : 0.05	b : 0.05	a : 0.05	e : 0.03	" : 0.03	f : 0.01	d : 0.01	
= : 0.19	c : 0.13	i : 0.11	[ : 0.09	d : 0.07	# : 0.07	b : 0.07	e : 0.05	" : 0.05	g : 0.05	f : 0.03	! : 0.01	
= : 0.17	c : 0.11	d : 0.11	" : 0.07	! : 0.07	[ : 0.07	i : 0.07	b : 0.05	e : 0.05	# : 0.05	g : 0.05	f : 0.03	a : 0.01	
= : 0.17	[ : 0.17	d : 0.13	e : 0.11	! : 0.07	i : 0.07	c : 0.05	# : 0.05	b : 0.03	" : 0.03	a : 0.01	g : 0.01	f : 0.01	
d : 0.30	e : 0.17	= : 0.11	[ : 0.09	c : 0.07	i : 0.05	" : 0.03	a : 0.03	g : 0.01	b : 0.01	# : 0.01	x : 0.01	f : 0.01	
d : 0.26	e : 0.17	c : 0.13	= : 0.09	i : 0.05	[ : 0.03	b : 0.03	" : 0.03	! : 0.03	r : 0.01	a : 0.01	s : 0.01	g : 0.01	x : 0.01	f : 0.01	
d : 0.24	e : 0.15	c : 0.11	= : 0.09	! : 0.05	i : 0.05	b : 0.03	" : 0.03	r : 0.03	q : 0.03	s : 0.03	o : 0.01	x : 0.01	f : 0.01	[ : 0.01	
d : 0.24	e : 0.13	= : 0.07	c : 0.07	o : 0.07	b : 0.07	i : 0.05	! : 0.03	r : 0.03	q : 0.03	s : 0.03	" : 0.01	[ : 0.01	a : 0.01	x : 0.01	n : 0.01	
o : 0.38	e : 0.07	b : 0.07	m : 0.05	d : 0.05	n : 0.05	r : 0.05	s : 0.05	= : 0.03	a : 0.03	q : 0.03	! : 0.01	x : 0.01	i : 0.01	
o : 0.46	m : 0.11	n : 0.09	r : 0.05	s : 0.05	c : 0.03	d : 0.03	q : 0.03	= : 0.01	b : 0.01	e : 0.01	x : 0.01	i : 0.01	
o : 0.48	m : 0.13	n : 0.09	r : 0.05	s : 0.05	c : 0.03	q : 0.03	l : 0.03	= : 0.01	d : 0.01	x : 0.01	
o : 0.48	m : 0.13	n : 0.09	l : 0.07	r : 0.05	s : 0.05	c : 0.03	q : 0.03	x : 0.01	
o : 0.46	l : 0.11	m : 0.07	n : 0.07	c : 0.05	r : 0.05	s : 0.05	q : 0.03	d : 0.01	x : 0.01	= : 0.01	
o : 0.40	l : 0.07	c : 0.07	e : 0.05	b : 0.05	r : 0.05	s : 0.05	n : 0.03	q : 0.03	d : 0.03	m : 0.01	a : 0.01	x : 0.01	f : 0.01	= : 0.01	
d : 0.28	e : 0.15	c : 0.11	o : 0.09	b : 0.07	s : 0.05	l : 0.03	= : 0.03	r : 0.03	a : 0.01	i : 0.01	3 : 0.01	x : 0.01	f : 0.01	
d : 0.30	e : 0.15	c : 0.11	] : 0.07	= : 0.05	b : 0.05	2 : 0.03	s : 0.03	a : 0.01	i : 0.01	3 : 0.01	g : 0.01	x : 0.01	f : 0.01	o : 0.01	r : 0.01	
d : 0.28	e : 0.15	c : 0.11	= : 0.11	b : 0.09	2 : 0.03	3 : 0.03	i : 0.03	] : 0.01	s : 0.01	g : 0.01	x : 0.01	f : 0.01	r : 0.01	
d : 0.26	e : 0.15	= : 0.11	c : 0.07	i : 0.07	b : 0.05	3 : 0.05	a : 0.05	] : 0.03	2 : 0.01	s : 0.01	g : 0.01	x : 0.01	f : 0.01	
] : 0.19	2 : 0.15	3 : 0.13	= : 0.13	e : 0.09	i : 0.07	c : 0.07	d : 0.03	b : 0.01	g : 0.01	x : 0.01	f : 0.01	5 : 0.01	
= : 0.21	3 : 0.15	c : 0.15	2 : 0.13	i : 0.07	g : 0.05	4 : 0.03	e : 0.03	] : 0.03	d : 0.03	b : 0.01	a : 0.01	5 : 0.01	
= : 0.24	c : 0.19	3 : 0.11	i : 0.09	d : 0.07	e : 0.05	g : 0.05	4 : 0.03	b : 0.03	2 : 0.01	] : 0.01	f : 0.01	5 : 0.01	
= : 0.26	c : 0.17	i : 0.11	d : 0.07	f : 0.05	e : 0.05	g : 0.05	4 : 0.03	2 : 0.03	3 : 0.03	b : 0.03	a : 0.01	5 : 0.01	
= : 0.26	i : 0.11	c : 0.11	] : 0.07	d : 0.07	g : 0.07	f : 0.05	4 : 0.05	e : 0.05	2 : 0.03	b : 0.01	3 : 0.01	5 : 0.01	
= : 0.30	c : 0.13	i : 0.11	g : 0.09	f : 0.05	2 : 0.05	e : 0.05	d : 0.05	b : 0.05	4 : 0.01	3 : 0.01	a : 0.01	
= : 0.28	] : 0.13	g : 0.11	i : 0.11	c : 0.11	f : 0.05	2 : 0.03	b : 0.03	3 : 0.03	d : 0.01	4 : 0.01	e : 0.01	
= : 0.28	g : 0.11	c : 0.11	i : 0.09	a : 0.09	f : 0.07	] : 0.05	2 : 0.03	e : 0.03	b : 0.01	d : 0.01	4 : 0.01	3 : 0.01	
= : 0.23	] : 0.19	g : 0.11	2 : 0.07	f : 0.05	i : 0.05	3 : 0.05	c : 0.05	b : 0.03	a : 0.03	e : 0.03	> : 0.01	6 : 0.01	
= : 0.23	g : 0.13	c : 0.11	b : 0.09	e : 0.09	i : 0.07	3 : 0.05	a : 0.03	2 : 0.03	] : 0.03	f : 0.01	> : 0.01	d : 0.01	6 : 0.01	
= : 0.23	g : 0.17	b : 0.09	e : 0.09	c : 0.07	] : 0.07	i : 0.07	3 : 0.07	f : 0.01	a : 0.01	> : 0.01	d : 0.01	6 : 0.01	
g : 0.17	= : 0.15	c : 0.11	] : 0.09	e : 0.09	b : 0.05	i : 0.05	3 : 0.05	d : 0.03	2 : 0.03	G : 0.01	f : 0.01	4 : 0.01	> : 0.01	: : 0.01	6 : 0.01	

#score	756.3084482733813
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_CDS_m1_run2.txt

#BEAR
eeeee[===========mmmm===========eeeeeg	chr1:155658041-155658333(-)$1	292	135	173	11.8891
iiii[bb!!hhhhhhhhoooooohhhhhhhh333bb]i	chr19:1468583-1468863(-)$1	280	103	141	13.1209
fff[dddd[ddddccc[aooooooa22ccc]dddd]dd	chr22:50016599-50016925(-)$1	326	124	162	12.2883
h[bb####bb[bb[cccoooooocccbb]bb4444bbh	chr9:139756783-139757022(-)$1	239	21	59	12.7801
[ffffff[cccffffffooooooffffff22cccffff	chr19:1467818-1468101(-)$1	283	203	241	12.6790
[ggggggg[a[bb[cccooooooccc]bb]a22ggggg	chr19:18547563-18547871(-)$1	308	139	177	16.2499
e"""ddddeeeee[cccooooooccc]eeeee]dddd4	chr16:599471-599734(+)$1	263	216	254	14.1447
[ccc[bb!!bb[cccbboooooobb]ccc]bb]bbccc	chr5:180480729-180481009(+)$1	280	174	212	14.4369
dd[a[hhhhhhhh[cccooooooccc]hhhhhhhh]a2	chr1:36788084-36788341(+)$1	257	102	140	15.0047
hhhhhhhh!!ccc[bboooooobbccc22hhhhhhhhe	chr20:57581420-57581733(-)$1	313	3	41	13.0328
ccc[hhhhhhhhbb[aooooooa]bb]hhhhhhhh]cc	chr9:101867329-101867617(+)$1	288	230	268	13.3106
[==============[aooooooa]=============	chr12:123464926-123465211(+)$1	285	29	67	18.4771
==]a]eeeeecccddddoooooodddd]ccc=======	chrX:41193840-41194081(+)$1	241	45	83	14.2451
ggggggeeeee"""cccooooooccc22eeeee88888	chr19:2270335-2270595(+)$1	260	185	223	13.1185
iiiiiiiii$$$$$a[aooooooa]a4444iiiiiiii	chr19:1592441-1592724(-)$1	283	84	122	16.4681
dddccc[ggggggg!!cccmmmmccc]ggggggg]ccc	chr14:104165104-104165389(+)$1	285	170	208	12.5500
ccc[bb[eeeeeddddoooooodddd22eeeeebb]cc	chr7:5569289-5569537(-)$1	248	78	116	12.3682
iiiiiii[ccc!!acccooooooccc]a22ccciiiii	chr17:80788496-80788787(+)$1	291	182	220	17.5903
cc!!iiiiiiiii[aqqqqqqqqa]iiiiiiiii22cc	chr7:76126485-76126780(+)$1	295	139	177	12.1356
ccc[iiiiiiiii[cccooooooccc]iiiiiiiiicc	chr17:46627702-46628017(+)$1	315	191	229	19.2959
ccc[gggggggfffffflllffffff333gggggggcc	chr19:18548350-18548616(-)$1	266	82	120	12.7214
[bb!!ggggggg!!cccnnnnncccggggggg]bbddd	chr19:1475380-1475619(-)$1	239	122	160	12.9492
""dddd!!abbccc[bboooooobb]ccc]bb]a22dd	chr2:113994120-113994417(+)$1	297	53	91	13.1555
]bbggggggg!!eeeeeooooooeeeee22gggggggc	chr6:111136047-111136312(-)$1	265	136	174	14.6176
e[dddd[bb[a"""cccooooooccca]bbdddd]eee	chr19:18548472-18548747(-)$1	275	135	173	13.5922
hhhhhhhheeeee[cccooooooccceeeeeccc[hhh	chr7:127669789-127670030(+)$1	241	174	212	14.0027
:::ccc[ggggggg[bboooooobb22ggggggg]ccc	chr5:154135271-154135537(+)$1	266	107	145	14.2927
iiiiiiiii!!fffffflllffffff333iiiiiiiii	chr15:80215052-80215396(-)$1	344	206	244	13.0496
dd[a!!dddd####cccoooooocccdddd22adddd:	chr19:2425975-2426264(-)$1	289	123	161	12.4864
!!ffffffffffffcccooooooccc333ffffff]ff	chr19:1416336-1416617(+)$1	281	193	231	14.7622
============"""bboooooobb]============	chr11:63883596-63883850(-)$1	254	73	111	18.3610
cc!!ddddccc!!ddddoooooodddd22ccc]dddd]	chr22:32021687-32021976(-)$1	289	163	201	13.8886
cccc[a[gggggggddddllldddd22gggggggaccc	chr11:126146291-126146529(+)$1	238	34	72	12.7296
eee==========[ddddnnnnndddd333========	chr11:557748-558010(+)$1	262	187	225	13.4584
:::ccc[ggggggg[bboooooobb22ggggggg]ccc	chr5:154135352-154135593(+)$1	241	26	64	14.2927
============[cccqqqqqqqqccc===========	chr16:2105270-2105562(+)$1	292	0	38	12.9154
ffff]bbhhhhhhhhbboooooobb]hhhhhhhhiiii	chr19:2270568-2270794(+)$1	226	109	147	12.8669
ccggggggg$$$$$cccooooooccc333ggggggg22	chr7:5460766-5461027(-)$1	261	60	98	16.8296
ccc[ggggggg"""ggggggglllgggggggggggggg	chr16:89643723-89644054(+)$1	331	289	327	11.8511
iii"""ggggggg[eeeeellleeeee4444ggggggg	chr4:1804549-1804793(+)$1	244	49	87	11.8334
ccc!!a[ccc[dddd!!aooooooa22dddd]ccc]a5	chr7:77166711-77166985(+)$1	274	101	139	13.3215
hhh!!a[ccc[cccddddnnnnndddd333ccc]ccca	chr19:2270395-2270671(+)$1	276	27	65	11.7337
cccbb==============4444ccc]eeeeegggggg	chr22:20109990-20110237(+)$1	247	93	131	12.1072
[ccc!!ccc!!ffffffooooooffffffccc22ccc]	chr19:1468752-1469027(-)$1	275	7	45	14.5761
[ccc####ffffff[bboooooobb]ffffff22ccc]	chr17:76117142-76117453(-)$1	311	215	253	14.0819
!!a[ccc!!gggggggrrrrrrrrrggggggg4444cc	chr19:14273421-14273669(+)$1	248	37	75	12.5780
FFFFiiiiiiiii!!bboooooobbiiiiiiiiihhhh	chr16:2059546-2059791(-)$1	245	97	135	15.2826
ccc!!a[==========oooooo==========]a22c	chr9:139235381-139235651(+)$1	270	75	113	17.8139
::ffffffffffffcccooooooccc333ffffff]ff	chr19:1416417-1416678(+)$1	261	112	150	12.8265
ggggggccc[ccc[cccccclllccc22ccc]cccccc	chr2:54197737-54198042(-)$1	305	152	190	13.0298
:bb[===========[bbmmmmbb]===========]b	chr11:637278-637537(+)$1	259	130	168	11.7403
FF::ggggggg[a!!bboooooobb22a]ggggggg::	chr16:447729-448032(+)$1	303	247	285	12.4034

#otherMatches

#Seq PSSM
GGGAGGUUGGGGGUGUCGCUAGGCGCCCUUAGCUCCCU	chr1:155658041-155658333(-)$1	292	135	173	11.8891
GGGCGCCACCUUCCGCGGUGUGGCGCGGGGGCCGGGGG	chr19:1468583-1468863(-)$1	280	103	141	13.1209
ucugucucucccacugucucCCUUGCUCAGCUGGGUGG	chr22:50016599-50016925(-)$1	326	124	162	12.2883
GGUGUUCAUGCUCUGCUGUCUAAGGUGAUCAGACUCAU	chr9:139756783-139757022(-)$1	239	21	59	12.7801
AUGGCCGAUGUGCGCCGGUGGGUUGGCGUGGGCGCGGC	chr19:1467818-1468101(-)$1	283	203	241	12.6790
AGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUC	chr19:18547563-18547871(-)$1	308	139	177	16.2499
UCCAGGCGGGCCGCGCCAUCGAAGGCCUGGCCACGCUC	chr16:599471-599734(+)$1	263	216	254	14.1447
ACCGAGAAAACAGCCCAGUUACGUGAGGCAGUGUCCGG	chr5:180480729-180481009(+)$1	280	174	212	14.4369
GCGGGGGUCCCGGCGCUGAgccgggccccggggccgcg	chr1:36788084-36788341(+)$1	257	102	140	15.0047
UUCACAUUCUGAGAGCGCUGGAGCCUCCUAGUGUGAGG	chr20:57581420-57581733(-)$1	313	3	41	13.0328
gcggcgCUGCUCCCGGGGGCGACGGGUGAgcggcggcg	chr9:101867329-101867617(+)$1	288	230	268	13.3106
GGGGAGGAGGGCGGCGCGCGCGAGGGUCGCCUUCUUCC	chr12:123464926-123465211(+)$1	285	29	67	18.4771
CGGGAGUGCGCAGCGCGGCGGGACGCGACUGGAGGCCC	chrX:41193840-41194081(+)$1	241	45	83	14.2451
GGGGGUGGCGCACUCCGACAGCCCGGCAGCGCCCUGGG	chr19:2270335-2270595(+)$1	260	185	223	13.1185
GCCGGGCGCAAUGGAGCGGAAGAGGUGGGAGUGCCCGG	chr19:1592441-1592724(-)$1	283	84	122	16.4681
GCCGGUCAGCCAGCAGUCUCACCAGGAGCUGGUUAGCC	chr14:104165104-104165389(+)$1	285	170	208	12.5500
CCGACCAGUGUUUGCCUUUUAUGGUAAUAACGCGGCCG	chr7:5569289-5569537(-)$1	248	78	116	12.3682
CUGGAAGGCGCGGCCUCCGAGACGAGAGAGGCGCUUCC	chr17:80788496-80788787(+)$1	291	182	220	17.5903
UCUGCGUGUCUGCUCUCACACCCGUGCAGGCAUGACGA	chr7:76126485-76126780(+)$1	295	139	177	12.1356
GGCAGGGGGCGGCAGCGGAUCCGCGUAGCCGCCCCCGC	chr17:46627702-46628017(+)$1	315	191	229	19.2959
GCCCGGCAGGUGCCCCGGCUCGGGGUCAUGCUUGUCGG	chr19:18548350-18548616(-)$1	266	82	120	12.7214
auguuguccaggcuggucucuaacucuugggcucaagu	chr19:1475380-1475619(-)$1	239	122	160	12.9492
GUACCUGCCACCACGGGGUAGGUCUGGUGAGUCGAGAG	chr2:113994120-113994417(+)$1	297	53	91	13.1555
GUCCUCGCCCUGCCCGCGACCUGGCGGGAUGGGUGGGU	chr6:111136047-111136312(-)$1	265	136	174	14.6176
AAGGGCACGGGACCCGGGAUUCACUGCGCGGCCUGUCU	chr19:18548472-18548747(-)$1	275	135	173	13.5922
GGGAGCUCAGGCCAUGGAAGGAGCCAGGCCUGAUCUCA	chr7:127669789-127670030(+)$1	241	174	212	14.0027
ACGGGGGGCUGGUGAGGAAGAAGCCGCCGCCGGCGCCC	chr5:154135271-154135537(+)$1	266	107	145	14.2927
GAGGUGGGAAACUGCUUUGUAGGCAGGGAUUCUGCUUU	chr15:80215052-80215396(-)$1	344	206	244	13.0496
CCUGCUGCUCCUGUUGCUUUCACGUAGAGUCUCGGCCU	chr19:2425975-2426264(-)$1	289	123	161	12.4864
AUGACAUCUAAGGCCCCGUGCCUGGGUAAGCCUUGUGG	chr19:1416336-1416617(+)$1	281	193	231	14.7622
guggugguggcaguggcgguggggugUGCCACCACCAU	chr11:63883596-63883850(-)$1	254	73	111	18.3610
CUGCGCCGGCCCAUGAUGUGUCAGUCAGAGGCGCGGCA	chr22:32021687-32021976(-)$1	289	163	201	13.8886
CUAGAGACUCCGCUUGUUGCAGACACCAGUGGAGCCUA	chr11:126146291-126146529(+)$1	238	34	72	12.7296
GCCAGCUGCAGGAGGCAGGACUUCUGCAAGUUCUGCAG	chr11:557748-558010(+)$1	262	187	225	13.4584
ACGGGGGGCUGGUGAGGAAGAAGCCGCCGCCGGCGCCC	chr5:154135352-154135593(+)$1	241	26	64	14.2927
UUGCUGCCGGGGGACUGAUGAUGGGGUUUCUGGCAGUG	chr16:2105270-2105562(+)$1	292	0	38	12.9154
GGGCGUCGCUCAGCCCCGGAUCGGGAGGUUGGGCCGCG	chr19:2270568-2270794(+)$1	226	109	147	12.8669
UCUGGGACUACGCCGAGGCCGAACUUUUAGGUCCCACU	chr7:5460766-5461027(-)$1	261	60	98	16.8296
UACUACUUCGAGGAGGUGCAGAGGCUGCGCUUUGAGGU	chr16:89643723-89644054(+)$1	331	289	327	11.8511
UGCCUCGGGGGCGUGCCUGAGCCGGGUCUCUUGUCCCC	chr4:1804549-1804793(+)$1	244	49	87	11.8334
gcgggcgggcggcgggggggccAGCGACCGCAGCCGGG	chr7:77166711-77166985(+)$1	274	101	139	13.3215
CCCCUGAGCGAGUCGGUCUGGAUGGCCCGGGACGCGCC	chr19:2270395-2270671(+)$1	276	27	65	11.7337
CCAGAAAUACGUUUUUCAGACGUGCCUCUGAACUCAGA	chr22:20109990-20110237(+)$1	247	93	131	12.1072
GGGGAGGCUCCGGGGCCGGGCAGGGCCCCAGCAGCCUG	chr19:1468752-1469027(-)$1	275	7	45	14.5761
AGGCUGCUGGCCAGGAGGCUGUGCUGCUGGUCCUGCCC	chr17:76117142-76117453(-)$1	311	215	253	14.0819
ACCACGAAAUAGUUGUUCCAGACGUACAGCUGGUUGUC	chr19:14273421-14273669(+)$1	248	37	75	12.5780
GGCGGCAGCUCCUGAGCGGGAAGGCGGGAGCUGCGUGC	chr16:2059546-2059791(-)$1	245	97	135	15.2826
UCCAGGGUUGUGGGGGGGUCUUGCUCCCCACAGGCACG	chr9:139235381-139235651(+)$1	270	75	113	17.8139
AUGACAUCUAAGGCCCCGUGCCUGGGUAAGCCUUGUGG	chr19:1416417-1416678(+)$1	261	112	150	12.8265
Agcccccggagccgggcgggcgucccgagccgggcccg	chr2:54197737-54198042(-)$1	305	152	190	13.0298
GGCGGCGCUGGUGGGGGGCGUGCUGCUCAUCGGCGCGG	chr11:637278-637537(+)$1	259	130	168	11.7403
UUUUGGGGGAACAAACCAACCAGGGGGUCUUCCUCCCG	chr16:447729-448032(+)$1	303	247	285	12.4034

#DB
(((((.(((((((((((....)))))))))))))))))	chr1:155658041-155658333(-)$1	1	135	173	11.8891
((((.((..((((((((......))))))))...)).)	chr19:1468583-1468863(-)$1	1	103	141	13.1209
(((.((((.(((((((.(......)..))).)))).))	chr22:50016599-50016925(-)$1	1	124	162	12.2883
(.((....((.((.(((......))))).))....)))	chr9:139756783-139757022(-)$1	1	21	59	12.7801
.((((((.(((((((((......))))))..)))))))	chr19:1467818-1468101(-)$1	1	203	241	12.6790
.(((((((.(.((.(((......))).)).)..)))))	chr19:18547563-18547871(-)$1	1	139	177	16.2499
(...(((((((((.(((......))).))))).)))).	chr16:599471-599734(+)$1	1	216	254	14.1447
.(((.((..((.(((((......)).))).)).)))))	chr5:180480729-180481009(+)$1	1	174	212	14.4369
((.(.((((((((.(((......))).)))))))).).	chr1:36788084-36788341(+)$1	1	102	140	15.0047
((((((((..(((.((......)))))..))))))))(	chr20:57581420-57581733(-)$1	1	3	41	13.0328
(((.((((((((((.(......).)).)))))))).))	chr9:101867329-101867617(+)$1	1	230	268	13.3106
.((((((((((((((.(......).)))))))))))))	chr12:123464926-123465211(+)$1	1	29	67	18.4771
)).).)))))(((((((......)))).)))(((((((	chrX:41193840-41194081(+)$1	1	45	83	14.2451
(((((((((((...(((......)))..))))).....	chr19:2270335-2270595(+)$1	1	185	223	13.1185
(((((((((.....(.(......).)....))))))))	chr19:1592441-1592724(-)$1	1	84	122	16.4681
((((((.(((((((..(((....))).))))))).)))	chr14:104165104-104165389(+)$1	1	170	208	12.5500
(((.((.(((((((((......))))..))))))).))	chr7:5569289-5569537(-)$1	1	78	116	12.3682
(((((((.(((..((((......))).)..))))))))	chr17:80788496-80788787(+)$1	1	182	220	17.5903
((..(((((((((.(........).)))))))))..))	chr7:76126485-76126780(+)$1	1	139	177	12.1356
(((.(((((((((.(((......))).)))))))))))	chr17:46627702-46628017(+)$1	1	191	229	19.2959
(((.(((((((((((((...))))))...)))))))))	chr19:18548350-18548616(-)$1	1	82	120	12.7214
.((..(((((((..(((.....)))))))))).)))))	chr19:1475380-1475619(-)$1	1	122	160	12.9492
..((((..((((((.((......)).))).)).)..))	chr2:113994120-113994417(+)$1	1	53	91	13.1555
.))(((((((..(((((......)))))..)))))))(	chr6:111136047-111136312(-)$1	1	136	174	14.6176
(.((((.((.(...(((......)))).)))))).)))	chr19:18548472-18548747(-)$1	1	135	173	13.5922
))))))))(((((.(((......))))))))(((.(((	chr7:127669789-127670030(+)$1	1	174	212	14.0027
...(((.(((((((.((......))..))))))).)))	chr5:154135271-154135537(+)$1	1	107	145	14.2927
(((((((((..((((((...))))))...)))))))))	chr15:80215052-80215396(-)$1	1	206	244	13.0496
((.(..((((....(((......)))))))..))))).	chr19:2425975-2426264(-)$1	1	123	161	12.4864
..(((((((((((((((......)))...)))))).))	chr19:1416336-1416617(+)$1	1	193	231	14.7622
((((((((((((...((......)).))))))))))))	chr11:63883596-63883850(-)$1	1	73	111	18.3610
((..(((((((..((((......))))..))).)))).	chr22:32021687-32021976(-)$1	1	163	201	13.8886
)(((.(.(((((((((((...))))..)))))))))))	chr11:126146291-126146529(+)$1	1	34	72	12.7296
(((((((((((((.((((.....))))...))))))))	chr11:557748-558010(+)$1	1	187	225	13.4584
...(((.(((((((.((......))..))))))).)))	chr5:154135352-154135593(+)$1	1	26	64	14.2927
((((((((((((.(((........))))))))))))))	chr16:2105270-2105562(+)$1	1	0	38	12.9154
)))).))((((((((((......)).))))))))((((	chr19:2270568-2270794(+)$1	1	109	147	12.8669
(((((((((.....(((......)))...)))))))..	chr7:5460766-5461027(-)$1	1	60	98	16.8296
(((.(((((((...(((((((...))))))))))))))	chr16:89643723-89644054(+)$1	1	289	327	11.8511
(((...(((((((.(((((...)))))....)))))))	chr4:1804549-1804793(+)$1	1	49	87	11.8334
(((..(.(((.((((..(......)..)))).))).).	chr7:77166711-77166985(+)$1	1	101	139	13.3215
(((..(.(((.(((((((.....))))...))).))))	chr19:2270395-2270671(+)$1	1	27	65	11.7337
)))))))))))))))))))....))).)))))))))))	chr22:20109990-20110237(+)$1	1	93	131	12.1072
.(((..(((..((((((......)))))))))..))).	chr19:1468752-1469027(-)$1	1	7	45	14.5761
.(((....((((((.((......)).))))))..))).	chr17:76117142-76117453(-)$1	1	215	253	14.0819
..(.(((..(((((((.........)))))))....))	chr19:14273421-14273669(+)$1	1	37	75	12.5780
(((((((((((((..((......)))))))))))((((	chr16:2059546-2059791(-)$1	1	97	135	15.2826
(((..(.((((((((((......)))))))))).)..)	chr9:139235381-139235651(+)$1	1	75	113	17.8139
..(((((((((((((((......)))...)))))).))	chr19:1416417-1416678(+)$1	1	112	150	12.8265
(((((((((.(((.((((((...)))..))).))))))	chr2:54197737-54198042(-)$1	1	152	190	13.0298
.((.(((((((((((.((....)).))))))))))).)	chr11:637278-637537(+)$1	1	130	168	11.7403
))..(((((((.(..((......))..).)))))))..	chr16:447729-448032(+)$1	1	247	285	12.4034

#PSSM
c : 0.23	[ : 0.13	i : 0.09	e : 0.07	h : 0.07	: : 0.07	d : 0.05	= : 0.05	f : 0.03	g : 0.03	! : 0.03	F : 0.03	" : 0.01	] : 0.01	
c : 0.28	i : 0.09	= : 0.07	f : 0.05	g : 0.05	d : 0.05	h : 0.05	b : 0.05	: : 0.05	e : 0.03	[ : 0.03	" : 0.03	! : 0.03	F : 0.03	
c : 0.23	i : 0.09	f : 0.09	b : 0.07	g : 0.07	h : 0.05	= : 0.05	d : 0.05	: : 0.05	e : 0.03	[ : 0.03	! : 0.03	" : 0.01	] : 0.01	a : 0.01	F : 0.01	
[ : 0.15	c : 0.13	! : 0.11	g : 0.09	i : 0.07	f : 0.07	= : 0.07	a : 0.05	b : 0.03	" : 0.03	h : 0.03	d : 0.03	e : 0.01	F : 0.01	: : 0.01	
g : 0.15	i : 0.11	! : 0.11	d : 0.09	= : 0.09	[ : 0.07	c : 0.07	f : 0.05	h : 0.05	# : 0.03	] : 0.03	b : 0.03	e : 0.01	" : 0.01	
g : 0.17	= : 0.11	i : 0.11	d : 0.09	b : 0.07	h : 0.07	c : 0.07	a : 0.07	f : 0.05	# : 0.03	! : 0.03	[ : 0.01	e : 0.01	" : 0.01	
[ : 0.17	g : 0.15	= : 0.13	i : 0.11	d : 0.07	h : 0.07	b : 0.05	f : 0.05	c : 0.05	# : 0.03	e : 0.03	! : 0.01	
g : 0.23	= : 0.15	h : 0.09	i : 0.09	! : 0.07	d : 0.07	c : 0.07	e : 0.05	# : 0.03	[ : 0.03	f : 0.03	b : 0.01	
g : 0.21	= : 0.15	c : 0.13	e : 0.09	i : 0.09	! : 0.07	h : 0.05	f : 0.05	[ : 0.03	b : 0.03	a : 0.01	d : 0.01	
g : 0.21	= : 0.15	c : 0.09	e : 0.09	h : 0.07	b : 0.05	! : 0.05	i : 0.05	f : 0.05	d : 0.03	$ : 0.03	[ : 0.03	a : 0.01	
g : 0.19	= : 0.15	c : 0.11	h : 0.07	[ : 0.07	e : 0.07	i : 0.05	! : 0.05	f : 0.05	b : 0.03	$ : 0.03	d : 0.01	a : 0.01	# : 0.01	
= : 0.15	f : 0.13	g : 0.13	c : 0.09	h : 0.07	e : 0.05	" : 0.05	! : 0.05	i : 0.05	d : 0.03	b : 0.03	[ : 0.03	$ : 0.03	# : 0.01	
f : 0.13	= : 0.11	c : 0.11	g : 0.11	" : 0.07	h : 0.05	d : 0.05	b : 0.05	e : 0.05	! : 0.05	i : 0.05	$ : 0.03	# : 0.01	[ : 0.01	a : 0.01	
[ : 0.21	f : 0.13	= : 0.09	c : 0.09	g : 0.09	d : 0.07	" : 0.07	! : 0.05	h : 0.03	$ : 0.03	b : 0.01	a : 0.01	e : 0.01	# : 0.01	
c : 0.34	d : 0.13	= : 0.09	[ : 0.09	f : 0.07	! : 0.05	h : 0.03	a : 0.03	e : 0.03	g : 0.03	b : 0.01	" : 0.01	
c : 0.32	b : 0.19	d : 0.11	f : 0.07	= : 0.05	[ : 0.05	! : 0.03	e : 0.03	g : 0.03	h : 0.01	a : 0.01	q : 0.01	
c : 0.30	b : 0.19	d : 0.09	f : 0.07	= : 0.05	o : 0.05	a : 0.03	q : 0.03	e : 0.03	h : 0.01	[ : 0.01	g : 0.01	! : 0.01	r : 0.01	
o : 0.65	d : 0.05	a : 0.03	c : 0.03	q : 0.03	l : 0.03	m : 0.01	n : 0.01	g : 0.01	e : 0.01	= : 0.01	r : 0.01	b : 0.01	
o : 0.69	l : 0.05	n : 0.05	m : 0.03	c : 0.03	q : 0.03	g : 0.01	e : 0.01	= : 0.01	r : 0.01	
o : 0.69	l : 0.07	m : 0.05	n : 0.05	q : 0.03	g : 0.01	4 : 0.01	r : 0.01	c : 0.01	
o : 0.69	m : 0.05	n : 0.05	l : 0.05	q : 0.03	f : 0.03	g : 0.01	4 : 0.01	r : 0.01	
o : 0.69	n : 0.05	l : 0.05	m : 0.03	q : 0.03	f : 0.03	= : 0.01	d : 0.01	4 : 0.01	r : 0.01	
o : 0.63	b : 0.03	d : 0.03	q : 0.03	f : 0.03	n : 0.03	l : 0.03	= : 0.01	a : 0.01	m : 0.01	c : 0.01	e : 0.01	4 : 0.01	r : 0.01	
c : 0.32	b : 0.21	d : 0.11	f : 0.07	a : 0.05	= : 0.03	o : 0.03	e : 0.03	h : 0.01	] : 0.01	q : 0.01	l : 0.01	r : 0.01	
c : 0.36	b : 0.19	d : 0.11	f : 0.07	] : 0.07	= : 0.03	a : 0.03	e : 0.03	h : 0.01	g : 0.01	r : 0.01	
c : 0.34	2 : 0.11	] : 0.09	d : 0.09	= : 0.07	f : 0.07	g : 0.05	i : 0.03	e : 0.03	h : 0.01	b : 0.01	a : 0.01	
2 : 0.17	] : 0.15	= : 0.09	d : 0.09	3 : 0.09	c : 0.07	f : 0.05	g : 0.05	e : 0.05	h : 0.03	i : 0.03	b : 0.01	4 : 0.01	a : 0.01	
g : 0.13	3 : 0.13	= : 0.11	2 : 0.09	h : 0.07	e : 0.07	c : 0.05	f : 0.05	i : 0.05	b : 0.03	] : 0.03	4 : 0.03	a : 0.03	d : 0.03	
g : 0.13	3 : 0.13	= : 0.11	c : 0.09	e : 0.09	h : 0.07	2 : 0.07	f : 0.05	i : 0.05	] : 0.03	b : 0.03	4 : 0.03	d : 0.03	
g : 0.19	= : 0.11	h : 0.09	c : 0.09	e : 0.09	i : 0.07	2 : 0.05	] : 0.05	f : 0.05	b : 0.03	4 : 0.03	d : 0.03	3 : 0.03	
g : 0.21	= : 0.13	c : 0.11	h : 0.09	e : 0.09	i : 0.09	b : 0.05	f : 0.05	2 : 0.03	d : 0.03	] : 0.01	a : 0.01	4 : 0.01	
g : 0.23	= : 0.15	c : 0.11	i : 0.09	e : 0.07	h : 0.07	f : 0.05	d : 0.03	2 : 0.03	b : 0.03	] : 0.03	3 : 0.01	4 : 0.01	
g : 0.21	= : 0.13	c : 0.11	] : 0.09	i : 0.09	h : 0.07	e : 0.05	2 : 0.05	d : 0.03	4 : 0.03	f : 0.03	3 : 0.01	a : 0.01	
g : 0.23	= : 0.11	i : 0.11	d : 0.09	c : 0.07	h : 0.07	b : 0.05	4 : 0.03	f : 0.03	] : 0.03	2 : 0.03	e : 0.01	3 : 0.01	8 : 0.01	a : 0.01	
g : 0.15	= : 0.11	i : 0.09	c : 0.09	b : 0.07	d : 0.07	h : 0.07	] : 0.07	f : 0.05	4 : 0.03	2 : 0.03	a : 0.03	e : 0.01	8 : 0.01	[ : 0.01	
c : 0.17	g : 0.15	] : 0.13	= : 0.11	i : 0.09	d : 0.07	h : 0.05	2 : 0.05	e : 0.03	b : 0.03	f : 0.01	8 : 0.01	4 : 0.01	
c : 0.28	d : 0.11	g : 0.09	= : 0.09	i : 0.07	f : 0.05	h : 0.05	e : 0.03	] : 0.03	a : 0.03	2 : 0.03	b : 0.01	8 : 0.01	: : 0.01	
c : 0.26	g : 0.09	i : 0.09	= : 0.09	d : 0.05	h : 0.05	f : 0.05	] : 0.05	2 : 0.03	e : 0.03	: : 0.03	4 : 0.01	8 : 0.01	5 : 0.01	a : 0.01	b : 0.01	

#score	721.3396488278177
#seq	52
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_UTR_m1_run1.txt

#BEAR
ggggggvvvvvvvvvvvvvggggg	chr3:186507603-186507937(-)$1	334	52	76	24.4699
c[ddddvvvvvvvvvvvvvdddd]	chr20:60711811-60712107(-)$1	296	184	208	23.7292
hhhhhhvvvvvvvvvvvvvhhhhh	chr11:77336691-77336964(-)$1	273	143	167	22.3682
hhhh[auuuuuuuuuuuuahhhhh	chr7:148514879-148515161(-)$1	282	196	220	22.6074
c[ddddtttttttttttdddd]cc	chr5:82352565-82352855(-)$1	290	40	64	22.2382
ddd[bbvvvvvvvvvvvvvbb]dd	chr4:1950228-1950499(+)$1	271	57	81	22.2339
ddddccctttttttttttccc]dd	chr21:34932809-34933061(+)$1	252	144	168	22.2526
!eeeeeuuuuuuuuuuuueeeee]	chr12:8929368-8929675(+)$1	307	153	177	24.0433
""dddduuuuuuuuuuuudddd33	chr5:65374347-65374642(+)$1	295	104	128	23.3876
ffffffwwwwwwwwwwwwwwffff	chr2:232577058-232577268(+)$1	210	87	111	21.9388
""dddduuuuuuuuuuuudddd22	chr1:6948016-6948344(+)$1	328	65	89	22.9951
ggggggvvvvvvvvvvvvvggggg	chr3:142761906-142762188(+)$1	282	223	247	24.4699
###cccuuuuuuuuuuuuccc444	chr5:68660572-68660894(-)$1	322	54	78	23.5320
gggggggtttttttttttgggggg	chr8:38178445-38178791(-)$1	346	280	304	22.8783
ffffffwwwwwwwwwwwwwwffff	chr1:154243159-154243416(+)$1	257	225	249	21.9388
eeeeeyyyyyyyyyyyyyyyyeee	chr3:156865512-156865807(-)$1	295	187	211	20.8976
iiiiiivvvvvvvvvvvvviiiii	chr6:153291580-153291828(-)$1	248	78	102	24.2510
gg!!ccctttttttttttccc]gg	chr5:87490897-87491251(-)$1	354	92	116	23.3219
iiiiwwwwwwwwwwwwwwiiiiii	chr6:31797635-31797871(+)$1	236	47	71	21.7893
iiiiiivvvvvvvvvvvvviiiii	chr5:137492513-137492799(-)$1	286	137	161	24.2510
ggggggvvvvvvvvvvvvvggggg	chr4:6710115-6710377(-)$1	262	66	90	24.4699
[eeeeeuuuuuuuuuuuueeeee2	chr1:85718117-85718388(-)$1	271	21	45	23.7904
h[ddddvvvvvvvvvvvvvdddd]	chr7:11143073-11143384(+)$1	311	26	50	23.5995
cc[cccuuuuuuuuuuuuccc]cc	chr21:34930178-34930424(+)$1	246	120	144	24.0317
ccc[ayyyyyyyyyyyyyyyya]c	chr17:7465253-7465525(+)$1	272	25	49	20.5872
[eeeeeuuuuuuuuuuuueeeee]	chr6:4064933-4065211(+)$1	278	136	160	24.0548
ffffffvvvvvvvvvvvvvfffff	chr3:37029264-37029569(-)$1	305	135	159	23.3100
=======ttttttttttt======	chr8:124381990-124382291(-)$1	301	259	283	22.9942
eeeewwwwwwwwwwwwwweeeee3	chr14:73572803-73573092(+)$1	289	238	262	21.5481
ccddddtttttttttttdddd]cc	chr1:71528939-71529213(-)$1	274	47	71	22.0636
eeddddvvvvvvvvvvvvvdddd]	chr16:85709620-85709903(+)$1	283	120	144	23.5437
c[ddddtttttttttttdddd22c	chr13:111545234-111545488(-)$1	254	144	168	21.7738
ffffffuuuuuuuuuuuuffffff	chr22:22115138-22115400(-)$1	262	24	48	22.9863
ggggggvvvvvvvvvvvvvggggg	chr1:31404282-31404594(-)$1	312	121	145	24.4699
[eeeeeuuuuuuuuuuuueeeee]	chr17:73664500-73664813(+)$1	313	244	268	24.0548
e[dddduuuuuuuuuuuudddd]e	chr2:170668075-170668376(+)$1	301	201	225	23.3260
bb[ccctttttttttttccc]bb:	chr1:6283731-6283968(-)$1	237	158	182	20.6080
ffffffvvvvvvvvvvvvvfffff	chr20:52185116-52185375(-)$1	259	31	55	23.3100
ffffffvvvvvvvvvvvvvfffff	chr15:59205601-59205988(-)$1	387	204	228	23.3100
!eeeeeyyyyyyyyyyyyyyyyee	chr15:40488782-40489075(+)$1	293	66	90	20.8432
:eeeeevvvvvvvvvvvvveeeee	chr13:27640263-27640557(-)$1	294	116	140	23.0323
+++cccuuuuuuuuuuuuccc>>>	chr9:139734671-139734912(+)$1	241	111	135	20.8658
[aeeeeettttttttttteeeee]	chr3:183891114-183891425(+)$1	311	23	47	22.7467
ggggggyyyyyyyyyyyyyyyygg	chr8:128753354-128753617(+)$1	263	128	152	21.1014
ee[ccctttttttttttccc]eee	chr1:76260167-76260452(+)$1	285	184	208	22.8110
:fffffftttttttttttffffff	chr4:68338103-68338419(-)$1	316	238	262	20.8693
[a!!ccctttttttttttccca]f	chr3:142761856-142762071(+)$1	215	165	189	22.9524
:eeeeettttttttttteeeeeff	chr6:18236634-18236900(-)$1	266	188	212	21.4036
geeeeevvvvvvvvvvvvveeeee	chr8:104454922-104455282(+)$1	360	144	168	24.0717
ffffbbuuuuuuuuuuuubb]fff	chr2:47387784-47388043(-)$1	259	221	245	22.3793
ggggggwwwwwwwwwwwwwwgggg	chr7:1473944-1474313(-)$1	369	282	306	22.9841
gggggguuuuuuuuuuuugggggg	chr1:42642158-42642448(-)$1	290	5	29	24.1948
dd[cccwwwwwwwwwwwwwwccc]	chr1:59247128-59247426(-)$1	298	5	29	22.3777
eeeeewwwwwwwwwwwwwweeeee	chr21:34931150-34931368(+)$1	218	50	74	22.3731
gggggguuuuuuuuuuuugggggg	chr1:100985457-100985754(+)$1	297	241	265	24.1948
ccccccwwwwwwwwwwwwwwccc]	chr1:25568863-25569129(-)$1	266	217	241	22.5454
""cccvvvvvvvvvvvvvccc]cc	chr12:69667921-69668192(+)$1	271	91	115	23.3325
ee[ccctttttttttttccc]eee	chr1:76260259-76260530(+)$1	271	92	116	22.8110
gggggguuuuuuuuuuuugggggg	chr7:138991982-138992318(+)$1	336	35	59	24.1948
!eeeeewwwwwwwwwwwwwweeee	chr21:34931062-34931290(+)$1	228	137	161	22.6710
c!!ddddtttttttttttdddd22	chr1:63050246-63050533(-)$1	287	215	239	21.9478
b[ddddtttttttttttdddd]bb	chr15:76226659-76226934(+)$1	275	76	100	21.3791
gggggggtttttttttttgggggg	chr3:160133982-160134251(+)$1	269	35	59	22.8783
eeeeeyyyyyyyyyyyyyyyyeee	chr16:24227119-24227430(+)$1	311	150	174	20.8976
gggggggtttttttttttgggggg	chr1:113068422-113068713(-)$1	291	184	208	22.8783

#otherMatches

#Seq PSSM
AAGGAUGCUAAUUUCUUAAAUUUU	chr3:186507603-186507937(-)$1	334	52	76	24.4699
aAGCAUCAUGAUGAAUAAAAUGUC	chr20:60711811-60712107(-)$1	296	184	208	23.7292
GUGAUGAUGAUGUUGAACCUAUUA	chr11:77336691-77336964(-)$1	273	143	167	22.3682
AGACACGUCUAAUAACUGGGUUUU	chr7:148514879-148515161(-)$1	282	196	220	22.6074
CUUUUAUCUCCGAACAUUGAAUGA	chr5:82352565-82352855(-)$1	290	40	64	22.2382
UGGUGGGAAAAAGUCGGAAUCUCU	chr4:1950228-1950499(+)$1	271	57	81	22.2339
AACAGUUUACUUUUAUUUAACUUG	chr21:34932809-34933061(+)$1	252	144	168	22.2526
UCCCCAGUUUGGGGCUUGUGGGGC	chr12:8929368-8929675(+)$1	307	153	177	24.0433
AAGAACUCAAAAAAUUAUGUUCAA	chr5:65374347-65374642(+)$1	295	104	128	23.3876
UCUCCAGGUGAGGAAGAGGAUGGA	chr2:232577058-232577268(+)$1	210	87	111	21.9388
aagcugccuuuuucuuccuagcac	chr1:6948016-6948344(+)$1	328	65	89	22.9951
AGUGAAACUUAAAUUACACUUUAU	chr3:142761906-142762188(+)$1	282	223	247	24.4699
AUGCAUUGAAAAGAAAACGugaag	chr5:68660572-68660894(-)$1	322	54	78	23.5320
GAAACUUUCCCCCACACUGAGUUU	chr8:38178445-38178791(-)$1	346	280	304	22.8783
UUGGUGAAUAAGUAUUACUGUACC	chr1:154243159-154243416(+)$1	257	225	249	21.9388
ACAAGGAAAUAAAAUACAAAUCUU	chr3:156865512-156865807(-)$1	295	187	211	20.8976
UGUAAAUAUUUCUGUAUUUUUUAU	chr6:153291580-153291828(-)$1	248	78	102	24.2510
AAAAGAUGAAAAUAUUGAAUCCUU	chr5:87490897-87491251(-)$1	354	92	116	23.3219
UGAGGUGGACUGUUGGGACUCAAG	chr6:31797635-31797871(+)$1	236	47	71	21.7893
UUGUAUUGUCUUGUCAAUUGUACA	chr5:137492513-137492799(-)$1	286	137	161	24.2510
AAACAGCUUGUCAUUUUCUCUGUU	chr4:6710115-6710377(-)$1	262	66	90	24.4699
AUACUUCUAAAAAGCGCAAAGUAG	chr1:85718117-85718388(-)$1	271	21	45	23.7904
UUGAUCUUCAAGCUUUAAUGAUCC	chr7:11143073-11143384(+)$1	311	26	50	23.5995
AUGCUAAAAUAUUGCUGCUAGGAU	chr21:34930178-34930424(+)$1	246	120	144	24.0317
CUCGCGGGAGGGGAAGGAGGAGGG	chr17:7465253-7465525(+)$1	272	25	49	20.5872
UGAUCAAGAUAUGGAAGCUGAUUU	chr6:4064933-4065211(+)$1	278	136	160	24.0548
auauaagccuuguucacuguuaua	chr3:37029264-37029569(-)$1	305	135	159	23.3100
GAUGUAAUUAUAUUAGCUUUAUAU	chr8:124381990-124382291(-)$1	301	259	283	22.9942
UGUAUCUUUACUGCUAACUACAAG	chr14:73572803-73573092(+)$1	289	238	262	21.5481
GCAAAUGCAAGGUUAUAAUUUAGC	chr1:71528939-71529213(-)$1	274	47	71	22.0636
UAGGUAUUUAUGAAUAUAUUGCUG	chr16:85709620-85709903(+)$1	283	120	144	23.5437
ACUUAUUUUUCCUUUCUGUAAUAU	chr13:111545234-111545488(-)$1	254	144	168	21.7738
GUAUGUUAAUACACACAUACAUAC	chr22:22115138-22115400(-)$1	262	24	48	22.9863
UGUAUAAUUAACAAACCUGUGUAU	chr1:31404282-31404594(-)$1	312	121	145	24.4699
AUUUCAUUUGUCAGAUUUUGGAAC	chr17:73664500-73664813(+)$1	313	244	268	24.0548
CAAUUUUUUAUUCAUUUUAAAUAG	chr2:170668075-170668376(+)$1	301	201	225	23.3260
agccacuaaaccuuuccgugccua	chr1:6283731-6283968(-)$1	237	158	182	20.6080
GGAGCAGUUUCUGCUAUUGUGCUC	chr20:52185116-52185375(-)$1	259	31	55	23.3100
CUCUCUGCAGAAGAAAACAAGAGA	chr15:59205601-59205988(-)$1	387	204	228	23.3100
GCGUCUGAGGAGAAGAAAGAGAAG	chr15:40488782-40489075(+)$1	293	66	90	20.8432
ucucccugucuuguaaaaugggag	chr13:27640263-27640557(-)$1	294	116	140	23.0323
aaagcugccaagaagaagagcaaa	chr9:139734671-139734912(+)$1	241	111	135	20.8658
cucucuacuUUAAUUCAUUGgagc	chr3:183891114-183891425(+)$1	311	23	47	22.7467
AAAUGUAAAUAACUUUAAUAAAAC	chr8:128753354-128753617(+)$1	263	128	152	21.1014
GUUGCAUAGUAUAGUUUUGCCAUU	chr1:76260167-76260452(+)$1	285	184	208	22.8110
UAAACAUUUCUAACUCACAUGUUU	chr4:68338103-68338419(-)$1	316	238	262	20.8693
GUACUCUAAUCCAAUCAAAGAAGA	chr3:142761856-142762071(+)$1	215	165	189	22.9524
GAAGUCACAAUGAAACAGAUUUGC	chr6:18236634-18236900(-)$1	266	188	212	21.4036
UUGUGUCAGAGAAGAAGAAACACG	chr8:104454922-104455282(+)$1	360	144	168	24.0717
CUGUCAAAAAAAUAUGCAUGUAUA	chr2:47387784-47388043(-)$1	259	221	245	22.3793
GUGGUCUCAAUAAAGAAACCGACC	chr7:1473944-1474313(-)$1	369	282	306	22.9841
UGCAGAUACAACCUGCUCUCUGUA	chr1:42642158-42642448(-)$1	290	5	29	24.1948
UCAUUCAGUAUUAAAGGGGGGAGG	chr1:59247128-59247426(-)$1	298	5	29	22.3777
guauauguauuccuucucuuguac	chr21:34931150-34931368(+)$1	218	50	74	22.3731
AAUUUUACUCUGAUAAUAAAAAUU	chr1:100985457-100985754(+)$1	297	241	265	24.1948
UCUUGCAGAUAUGAGAGAUAGCAC	chr1:25568863-25569129(-)$1	266	217	241	22.5454
UUCCUUUCUUUAGCAUUUAGGUGA	chr12:69667921-69668192(+)$1	271	91	115	23.3325
GUUGCAUAGUAUAGUUUUGCCAUU	chr1:76260259-76260530(+)$1	271	92	116	22.8110
UAUACUGUAUUUCAAAUAAGUGUG	chr7:138991982-138992318(+)$1	336	35	59	24.1948
uguauauguauuccuucucuugua	chr21:34931062-34931290(+)$1	228	137	161	22.6710
aaaugauuaaaAGUACAUGUCAAA	chr1:63050246-63050533(-)$1	287	215	239	21.9478
uccaucuAAUACAGUAUGAUGUAA	chr15:76226659-76226934(+)$1	275	76	100	21.3791
UAACUUGUUUUAUAAUCUCAGGUU	chr3:160133982-160134251(+)$1	269	35	59	22.8783
UGUUAUGUGCCAUUUUUCUUCUAG	chr16:24227119-24227430(+)$1	311	150	174	20.8976
uauaugcuaaagcauuuugcauaU	chr1:113068422-113068713(-)$1	291	184	208	22.8783

#DB
((((((.............)))))	chr3:186507603-186507937(-)$1	1	52	76	24.4699
(.((((.............)))).	chr20:60711811-60712107(-)$1	1	184	208	23.7292
((((((.............)))))	chr11:77336691-77336964(-)$1	1	143	167	22.3682
((((.(............))))))	chr7:148514879-148515161(-)$1	1	196	220	22.6074
(.((((...........)))).))	chr5:82352565-82352855(-)$1	1	40	64	22.2382
(((.((.............)).))	chr4:1950228-1950499(+)$1	1	57	81	22.2339
(((((((...........))).))	chr21:34932809-34933061(+)$1	1	144	168	22.2526
.(((((............))))).	chr12:8929368-8929675(+)$1	1	153	177	24.0433
..((((............))))..	chr5:65374347-65374642(+)$1	1	104	128	23.3876
((((((..............))))	chr2:232577058-232577268(+)$1	1	87	111	21.9388
..((((............))))..	chr1:6948016-6948344(+)$1	1	65	89	22.9951
((((((.............)))))	chr3:142761906-142762188(+)$1	1	223	247	24.4699
...(((............)))...	chr5:68660572-68660894(-)$1	1	54	78	23.5320
(((((((...........))))))	chr8:38178445-38178791(-)$1	1	280	304	22.8783
((((((..............))))	chr1:154243159-154243416(+)$1	1	225	249	21.9388
(((((................)))	chr3:156865512-156865807(-)$1	1	187	211	20.8976
((((((.............)))))	chr6:153291580-153291828(-)$1	1	78	102	24.2510
((..(((...........))).))	chr5:87490897-87491251(-)$1	1	92	116	23.3219
((((..............))))))	chr6:31797635-31797871(+)$1	1	47	71	21.7893
((((((.............)))))	chr5:137492513-137492799(-)$1	1	137	161	24.2510
((((((.............)))))	chr4:6710115-6710377(-)$1	1	66	90	24.4699
.(((((............))))).	chr1:85718117-85718388(-)$1	1	21	45	23.7904
(.((((.............)))).	chr7:11143073-11143384(+)$1	1	26	50	23.5995
((.(((............))).))	chr21:34930178-34930424(+)$1	1	120	144	24.0317
(((.(................).)	chr17:7465253-7465525(+)$1	1	25	49	20.5872
.(((((............))))).	chr6:4064933-4065211(+)$1	1	136	160	24.0548
((((((.............)))))	chr3:37029264-37029569(-)$1	1	135	159	23.3100
(((((((...........))))))	chr8:124381990-124382291(-)$1	1	259	283	22.9942
((((..............))))).	chr14:73572803-73573092(+)$1	1	238	262	21.5481
((((((...........)))).))	chr1:71528939-71529213(-)$1	1	47	71	22.0636
((((((.............)))).	chr16:85709620-85709903(+)$1	1	120	144	23.5437
(.((((...........))))..)	chr13:111545234-111545488(-)$1	1	144	168	21.7738
((((((............))))))	chr22:22115138-22115400(-)$1	1	24	48	22.9863
((((((.............)))))	chr1:31404282-31404594(-)$1	1	121	145	24.4699
.(((((............))))).	chr17:73664500-73664813(+)$1	1	244	268	24.0548
(.((((............)))).)	chr2:170668075-170668376(+)$1	1	201	225	23.3260
((.(((...........))).)).	chr1:6283731-6283968(-)$1	1	158	182	20.6080
((((((.............)))))	chr20:52185116-52185375(-)$1	1	31	55	23.3100
((((((.............)))))	chr15:59205601-59205988(-)$1	1	204	228	23.3100
.(((((................))	chr15:40488782-40489075(+)$1	1	66	90	20.8432
.(((((.............)))))	chr13:27640263-27640557(-)$1	1	116	140	23.0323
...(((............)))...	chr9:139734671-139734912(+)$1	1	111	135	20.8658
.((((((...........))))).	chr3:183891114-183891425(+)$1	1	23	47	22.7467
((((((................))	chr8:128753354-128753617(+)$1	1	128	152	21.1014
((.(((...........))).)))	chr1:76260167-76260452(+)$1	1	184	208	22.8110
.((((((...........))))))	chr4:68338103-68338419(-)$1	1	238	262	20.8693
.(..(((...........)))).)	chr3:142761856-142762071(+)$1	1	165	189	22.9524
.(((((...........)))))((	chr6:18236634-18236900(-)$1	1	188	212	21.4036
((((((.............)))))	chr8:104454922-104455282(+)$1	1	144	168	24.0717
((((((............)).)))	chr2:47387784-47388043(-)$1	1	221	245	22.3793
((((((..............))))	chr7:1473944-1474313(-)$1	1	282	306	22.9841
((((((............))))))	chr1:42642158-42642448(-)$1	1	5	29	24.1948
((.(((..............))).	chr1:59247128-59247426(-)$1	1	5	29	22.3777
(((((..............)))))	chr21:34931150-34931368(+)$1	1	50	74	22.3731
((((((............))))))	chr1:100985457-100985754(+)$1	1	241	265	24.1948
((((((..............))).	chr1:25568863-25569129(-)$1	1	217	241	22.5454
..(((.............))).))	chr12:69667921-69668192(+)$1	1	91	115	23.3325
((.(((...........))).)))	chr1:76260259-76260530(+)$1	1	92	116	22.8110
((((((............))))))	chr7:138991982-138992318(+)$1	1	35	59	24.1948
.(((((..............))))	chr21:34931062-34931290(+)$1	1	137	161	22.6710
(..((((...........))))..	chr1:63050246-63050533(-)$1	1	215	239	21.9478
(.((((...........)))).))	chr15:76226659-76226934(+)$1	1	76	100	21.3791
(((((((...........))))))	chr3:160133982-160134251(+)$1	1	35	59	22.8783
(((((................)))	chr16:24227119-24227430(+)$1	1	150	174	20.8976
(((((((...........))))))	chr1:113068422-113068713(-)$1	1	184	208	22.8783

#PSSM
g : 0.21	c : 0.12	e : 0.12	f : 0.10	[ : 0.07	h : 0.04	d : 0.04	! : 0.04	" : 0.04	i : 0.04	: : 0.04	b : 0.03	# : 0.01	= : 0.01	+ : 0.01	
e : 0.24	g : 0.20	f : 0.12	[ : 0.09	c : 0.06	d : 0.04	" : 0.04	i : 0.04	h : 0.03	a : 0.03	# : 0.01	= : 0.01	b : 0.01	+ : 0.01	! : 0.01	
e : 0.21	g : 0.18	d : 0.18	f : 0.12	[ : 0.07	i : 0.04	! : 0.04	c : 0.04	h : 0.03	# : 0.01	= : 0.01	+ : 0.01	
e : 0.21	g : 0.18	d : 0.18	c : 0.13	f : 0.12	i : 0.04	h : 0.03	[ : 0.03	! : 0.03	= : 0.01	
e : 0.20	g : 0.18	c : 0.18	d : 0.16	f : 0.10	b : 0.03	i : 0.03	w : 0.03	h : 0.01	[ : 0.01	a : 0.01	= : 0.01	
g : 0.18	d : 0.16	c : 0.16	e : 0.15	f : 0.10	y : 0.04	w : 0.04	b : 0.03	i : 0.03	h : 0.01	a : 0.01	= : 0.01	v : 0.01	
v : 0.26	u : 0.24	w : 0.13	t : 0.12	y : 0.07	c : 0.04	g : 0.04	= : 0.01	e : 0.01	f : 0.01	d : 0.01	
t : 0.27	v : 0.26	u : 0.24	w : 0.13	y : 0.07	
t : 0.27	v : 0.26	u : 0.24	w : 0.13	y : 0.07	
t : 0.27	v : 0.26	u : 0.24	w : 0.13	y : 0.07	
t : 0.27	v : 0.26	u : 0.24	w : 0.13	y : 0.07	
t : 0.27	v : 0.26	u : 0.24	w : 0.13	y : 0.07	
t : 0.27	v : 0.26	u : 0.24	w : 0.13	y : 0.07	
t : 0.27	v : 0.26	u : 0.24	w : 0.13	y : 0.07	
t : 0.27	v : 0.26	u : 0.24	w : 0.13	y : 0.07	
t : 0.27	v : 0.26	u : 0.24	w : 0.13	y : 0.07	
t : 0.27	v : 0.26	u : 0.24	w : 0.13	y : 0.07	
v : 0.26	u : 0.24	t : 0.15	w : 0.13	y : 0.07	d : 0.06	c : 0.04	e : 0.01	
v : 0.24	c : 0.15	d : 0.12	e : 0.10	w : 0.10	g : 0.09	y : 0.07	f : 0.03	a : 0.01	i : 0.01	= : 0.01	b : 0.01	
d : 0.16	g : 0.15	c : 0.15	e : 0.15	w : 0.09	y : 0.07	f : 0.07	i : 0.04	h : 0.03	b : 0.03	= : 0.01	
g : 0.16	d : 0.16	e : 0.16	c : 0.13	f : 0.10	y : 0.07	] : 0.06	i : 0.04	h : 0.03	b : 0.01	= : 0.01	
e : 0.23	g : 0.16	] : 0.12	f : 0.12	d : 0.10	i : 0.04	h : 0.03	a : 0.03	y : 0.03	c : 0.03	4 : 0.01	= : 0.01	2 : 0.01	b : 0.01	> : 0.01	
e : 0.23	g : 0.20	f : 0.13	c : 0.09	d : 0.07	2 : 0.04	i : 0.04	] : 0.04	h : 0.03	b : 0.03	3 : 0.01	4 : 0.01	= : 0.01	> : 0.01	
g : 0.20	f : 0.15	e : 0.15	] : 0.13	c : 0.09	2 : 0.04	i : 0.04	h : 0.03	d : 0.03	3 : 0.03	4 : 0.01	= : 0.01	: : 0.01	> : 0.01	b : 0.01	

#score	1482.1662101655504
#seq	65
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_UTR_m3_run2.txt

#BEAR
ddd[iiiiiiiiimmmmiiiiiiiii333	chr11:64035042-64035291(+)$1	249	174	203	12.1301
b[ggggggg[ccclllccc333ggggggg	chr1:155110875-155111141(+)$1	266	209	238	11.3537
eee[bbccc[cccmmmmccc]ccc]bb22	chr19:1271452-1271715(+)$1	263	191	220	11.8253
bb!!iiiiiiiiimmmmiiiiiiiii333	chr19:1497438-1497848(+)$1	410	225	254	12.1554
a[ffffff"""bbmmmmbb]ffffff]a3	chr20:62331530-62331811(-)$1	281	168	197	11.2468
eeee!!ccc[cccmmmmcccccc>>>>>>	chr12:132335591-132335935(+)$1	344	196	225	10.9963
$eeeee!!bb!!ammmma22bbeeeee22	chr8:101733989-101734215(-)$1	226	142	171	9.9623
eeeeeee!!ddddmmmmdddd]eeeee22	chr20:57570169-57570393(-)$1	224	26	55	9.9771
ccc####bb[cccmmmmccc]bb4444cc	chr2:232673143-232673414(+)$1	271	2	31	11.7529
[ggggggg[ddddmmmmddddggggggg]	chr15:69072229-69072500(-)$1	271	1	30	10.8230
e!!ffffff[bboooooobb22ffffff2	chr1:150237745-150238024(-)$1	279	15	44	8.8294
dddd[ccc"""bbmmmmbb22ccc]dddd	chr11:67165681-67165961(-)$1	280	191	220	10.5325
ffffff####ccclllccc4444ffffff	chr1:173457404-173457646(+)$1	242	117	146	9.8555
c!!iiiiiiiiiooooooiiiiiiiii22	chr17:7306538-7306811(-)$1	273	25	54	10.3146
dd[dddd"""cccmmmmcccdddddddd]	chr15:79214307-79214637(-)$1	330	251	280	10.7979
!ccc[eeeee[bbmmmmbbeeeee]ccc2	chr19:18545753-18545990(-)$1	237	123	152	10.3552
hhhhhhhbb[cccmmmmccc]bbeeeeeg	chr6:158094594-158094885(+)$1	291	175	204	10.4859
gggggggbb[cccmmmmccc333bb]ggg	chr17:45922652-45922877(-)$1	225	173	202	12.4073
d[bbgggggggbbmmmmbb]ggggggg]b	chr16:767122-767406(+)$1	284	227	256	10.7127
f!!eeeeecccooooooccc]eeeee22f	chr19:46273083-46273342(-)$1	259	38	67	9.4571
gggg[dddd[cccmmmmccc]dddd6666	chr7:98993976-98994225(-)$1	249	146	175	10.1905
===####ffffffmmmmffffff4444==	chr6:43005325-43005642(-)$1	317	209	238	9.8856
ffffff"""ddddmmmmdddd]ffffff]	chr14:24701355-24701587(-)$1	232	21	50	9.9357
$eeeee!!bb!!ammmma22bbeeeee22	chr8:101734015-101734218(-)$1	203	145	174	9.9623
eeee"""bb[cccmmmmccc]bb333eee	chr6:30695763-30696006(-)$1	243	82	111	11.4988
:ccc[dddd[cccmmmmcccdddd]ccc:	chr6:43738602-43738817(+)$1	215	153	182	9.5166
ee!!ddddcccooooooccc333dddd22	chrX:152961798-152962014(+)$1	216	13	42	9.5776
[ccc!!cccacccmmmmccc]a]ccc22c	chr19:55741462-55741724(-)$1	262	149	178	12.5163
b[a[ccc"""cccmmmmccc]ccc]a]bb	chr19:18418224-18418452(-)$1	228	118	147	12.5001
###ggggggg[bblllbb]gggggggccc	chr12:124499179-124499401(+)$1	222	112	141	9.0094
!!ggggggg[a!!ammmma22a]gggggg	chr15:74701692-74701988(-)$1	296	220	249	10.8692
[ggggggg[ddddmmmmdddd]ggggggg	chr16:70605745-70606000(+)$1	255	31	60	10.6904
ccc"""gggggggmmmmggggggg]ccc]	chr16:31202617-31202847(+)$1	230	138	167	11.5240
a!!eeeee!!cccnnnnnccc]eeeee22	chr20:36146180-36146428(-)$1	248	215	244	9.2211
dd!!cccffffffmmmmffffff333ccc	chr17:4800805-4801054(+)$1	249	147	176	9.8684
ffffff[ccccccmmmmccc]ccc]ffff	chr9:138824941-138825193(-)$1	252	100	129	11.8918
!bb[bb!!a!!bbmmmmbb22a]bb]bb2	chr14:23790878-23791121(+)$1	243	73	102	10.1209
ddeeeee"""cccmmmmccc333eeeee:	chr7:75615168-75615397(+)$1	229	113	142	11.6827
ffffff####cccmmmmccc22ffffff:	chr7:98930859-98931141(+)$1	282	17	46	11.3897
e[ggggggg[cccmmmmccc]ggggggg]	chr19:3062270-3062520(-)$1	250	35	64	13.5184
fffff"""bbcccmmmmccc22bb333ff	chr11:67379490-67379746(+)$1	256	131	160	11.3717
f[ccc[gggggggmmmmgggggggccc]f	chr19:10941730-10941993(+)$1	263	39	68	11.3606
"""ccc[bb[bboooooobb22bb]ccc3	chr7:98993771-98994002(-)$1	231	100	129	9.0157
d::==========mmmm==========FF	chr16:3071985-3072269(+)$1	284	113	142	9.2584
dddd!!gggggggmmmmggggggg333dd	chr22:38352679-38352955(+)$1	276	7	36	10.6971
[ffffff[cccooooooccc]ffffffcc	chrX:153609616-153609837(+)$1	221	173	202	9.3216
fff[dddd[a[bbmmmmbba]dddd]fff	chrX:153195462-153195783(-)$1	321	95	124	10.1717
cc!!ffffffcccmmmmccc333ffffff	chrX:152961435-152961689(+)$1	254	199	228	12.0069
e[ccc[bb!!a[ammmmaa]bb]ccc333	chr8:21995793-21996105(-)$1	312	214	243	11.5899
"""eeeee!!cccmmmmccc]eeeee333	chr19:14230419-14230751(-)$1	332	174	203	13.1833
b[dddd[ccc!!ammmma22ccc]ddddb	chr16:88763052-88763320(-)$1	268	238	267	9.4061
a"""cccffffffmmmmffffff]ccc]a	chr19:11664169-11664418(-)$1	249	86	115	9.9874
gggggg####cccmmmmccc333gggggg	chr12:49952138-49952574(-)$1	436	253	282	13.5290
[bbeeeee[a[ccclllccc]aeeeee]b	chr19:35770258-35770532(+)$1	274	186	215	9.2448
ccc[dddd"""bbmmmmbb22ddddccc]	chr7:130146168-130146421(-)$1	253	41	70	10.8694
c[hhhhhhhh[bbmmmmbb333hhhhhhh	chr22:39258315-39258626(-)$1	311	121	150	9.3269

#otherMatches

#Seq PSSM
AGGUUAGGGCCUUGGUCAGGGCUUUGCUC	chr11:64035042-64035291(+)$1	249	174	203	12.1301
gaggucaggaguucaagaccaaccugacu	chr1:155110875-155111141(+)$1	266	209	238	11.3537
CCGGCCCAAGCACAGGGGUGGUUGCGGGA	chr19:1271452-1271715(+)$1	263	191	220	11.8253
GCAAGUCCUCUGGCAAGCCGGAGGACGCA	chr19:1497438-1497848(+)$1	410	225	254	12.1554
UGUCUGGAAAAGCGUAGGCAUCCGGAGGC	chr20:62331530-62331811(-)$1	281	168	197	11.2468
UGUGGACAGCGGCCCAGGCCCUGACGCUA	chr12:132335591-132335935(+)$1	344	196	225	10.9963
AGAAGGAACCAAGAGACCGAGGCCUUCCC	chr8:101733989-101734215(-)$1	226	142	171	9.9623
GAGGUGAAAGAGUUCAGACUUAUCACCAU	chr20:57570169-57570393(-)$1	224	26	55	9.9771
UGGAACUGCCGGCUAAUGCUUGCUCUCCC	chr2:232673143-232673414(+)$1	271	2	31	11.7529
GCUUUCUUACUUUUCCAGAAGAAGAAAGG	chr15:69072229-69072500(-)$1	271	1	30	10.8230
CCACUCCAGAGCUGCAGUGCCACUGGAGG	chr1:150237745-150238024(-)$1	279	15	44	8.8294
CUCAGGGCAACGGCAGGCCAGGUCGUGGG	chr11:67165681-67165961(-)$1	280	191	220	10.5325
AGAAUAACCCAGAUGCUCUUUCAUAUUCU	chr1:173457404-173457646(+)$1	242	117	146	9.8555
UUUGGUCCCUUGUGUCAUCAGGGGAUCUC	chr17:7306538-7306811(-)$1	273	25	54	10.3146
UGUGGGGAGAUCCACUGGGACCCCCAACA	chr15:79214307-79214637(-)$1	330	251	280	10.7979
AGGGCCCAGCCUCAAGCGAGUUGGACCCG	chr19:18545753-18545990(-)$1	237	123	152	10.3552
GGCUGAGGCGUCUGUGGAGAGGUGGCACC	chr6:158094594-158094885(+)$1	291	175	204	10.4859
AUUUGGCAGUGCCUGCAGGUUGCCUGGCC	chr17:45922652-45922877(-)$1	225	173	202	12.4073
CUGCCCACCUCCACCCCUGCGAGGUGGCG	chr16:767122-767406(+)$1	284	227	256	10.7127
CAUGACGCCCUGCUCUGGGGAGCGUCUGG	chr19:46273083-46273342(-)$1	259	38	67	9.4571
AGCAUUUCAUAUGUAACCAUUUGAAUGUU	chr7:98993976-98994225(-)$1	249	146	175	10.1905
UCCGGUAGCCCUAGACUUGGGGUCAGGGG	chr6:43005325-43005642(-)$1	317	209	238	9.8856
GCCCUUGCAGGCAAGAGUGCUGGAGGGCG	chr14:24701355-24701587(-)$1	232	21	50	9.9357
AGAAGGAACCAAGAGACCGAGGCCUUCCC	chr8:101734015-101734218(-)$1	203	145	174	9.9623
AGGUGAAUCACAAGCCUUUGAGAACAGCC	chr6:30695763-30696006(-)$1	243	82	111	11.4988
AGGGGGCCGCAGUGGCGACUCGGCGCUCG	chr6:43738602-43738817(+)$1	215	153	182	9.5166
CUUAAGGUGGAUGCACUUCCCGCACCUCC	chrX:152961798-152962014(+)$1	216	13	42	9.5776
UGGGCUGGCGGCUCCAAAGCACAGCCUUC	chr19:55741462-55741724(-)$1	262	149	178	12.5163
CCCGGGCACAGGCAGAGGCCAGCCAGAGA	chr19:18418224-18418452(-)$1	228	118	147	12.5001
AAGGGGUUUUUGUAUAACUAAAACCUCAG	chr12:124499179-124499401(+)$1	222	112	141	9.0094
GAGCUGGGCCCUUCUCCGGCUGUGUCUGG	chr15:74701692-74701988(-)$1	296	220	249	10.8692
ACUGCCACCUGGCUUCUGCCAUGUGGCAG	chr16:70605745-70606000(+)$1	255	31	60	10.6904
UUAAUUAGCCUGGCUCCCCAGGUUCUGGA	chr16:31202617-31202847(+)$1	230	138	167	11.5240
GAGGGGAGCAGUGGCCAUCAUCCUCCCGC	chr20:36146180-36146428(-)$1	248	215	244	9.2211
CACGUCAGGGGAGCCGGCUCCCCCCUUGA	chr17:4800805-4801054(+)$1	249	147	176	9.8684
CUUAUAAACUUUGGUGACGGUAGUGUGUA	chr9:138824941-138825193(-)$1	252	100	129	11.8918
GCCCCCGGCAGCCAAGAGGAGGAGGAGGA	chr14:23790878-23791121(+)$1	243	73	102	10.1209
CGCUCGGAUGAGGACUACCUGUACCGGGA	chr7:75615168-75615397(+)$1	229	113	142	11.6827
AGGCAACUUAAACAUUGGUUACUUGCCUU	chr7:98930859-98931141(+)$1	282	17	46	11.3897
CGUCGCCGCCAUUAGACAAUAGCgguggg	chr19:3062270-3062520(-)$1	250	35	64	13.5184
UUUCGUGAGGGGGGAUGCCCGGCCGGCCG	chr11:67379490-67379746(+)$1	256	131	160	11.3717
GCAGGAGCUUCAGUGGUCUGGGGCCCUCC	chr19:10941730-10941993(+)$1	263	39	68	11.3606
GGACUGUGUUGCCUGGGUGCUCAUUCAGA	chr7:98993771-98994002(-)$1	231	100	129	9.0157
ACAGGGGAGGGGGGUGCCCUCCUUCCUAG	chr16:3071985-3072269(+)$1	284	113	142	9.2584
guaccaggauuacaagugugauccaccgu	chr22:38352679-38352955(+)$1	276	7	36	10.6971
UCCUUUUGUCAUCUUGUUGGGGGGAGGGG	chrX:153609616-153609837(+)$1	221	173	202	9.3216
UCCUGGUGGCAGCUGAGGCGGCACCUGGA	chrX:153195462-153195783(-)$1	321	95	124	10.1717
CAUGGUGGGGGCCUCGGGGCUGUCCCCAC	chrX:152961435-152961689(+)$1	254	199	228	12.0069
CCACCCUCCUGACUCCUGCUGAUGGUUAA	chr8:21995793-21996105(-)$1	312	214	243	11.5899
UCUGUCUCCGGGCCAGGGUCAGGGACCCU	chr19:14230419-14230751(-)$1	332	174	203	13.1833
GACUGUGCCCCGCUGCGGGAGGGGACGGC	chr16:88763052-88763320(-)$1	268	238	267	9.4061
GGUGGCCGUGAGUGUGUGCUCACAGGUAC	chr19:11664169-11664418(-)$1	249	86	115	9.9874
GGCUCAGCUGCGGGCCAUUGAUUUGAGCC	chr12:49952138-49952574(-)$1	436	253	282	13.5290
GAGGGGACAGAGGCCCUGCCACGUCCCGC	chr19:35770258-35770532(+)$1	274	186	215	9.2448
CAGCAGAUCAAGCAAAUGUCUAUCUUUGC	chr7:130146168-130146421(-)$1	253	41	70	10.8694
ACAGUGGAGCCCCACCUGGUCAGUUCCAC	chr22:39258315-39258626(-)$1	311	121	150	9.3269

#DB
(((.(((((((((....)))))))))...	chr11:64035042-64035291(+)$1	1	174	203	12.1301
(.(((((((.(((...)))...)))))))	chr1:155110875-155111141(+)$1	1	209	238	11.3537
(((.(((((.(((....))).))).))..	chr19:1271452-1271715(+)$1	1	191	220	11.8253
((..(((((((((....)))))))))...	chr19:1497438-1497848(+)$1	1	225	254	12.1554
(.((((((...((....)).)))))).).	chr20:62331530-62331811(-)$1	1	168	197	11.2468
((((..(((.(((....))))))......	chr12:132335591-132335935(+)$1	1	196	225	10.9963
.(((((..((..(....)..)))))))..	chr8:101733989-101734215(-)$1	1	142	171	9.9623
(((((((..((((....)))).)))))..	chr20:57570169-57570393(-)$1	1	26	55	9.9771
(((....((.(((....))).))....))	chr2:232673143-232673414(+)$1	1	2	31	11.7529
.(((((((.((((....))))))))))).	chr15:69072229-69072500(-)$1	1	1	30	10.8230
(..((((((.((......))..)))))).	chr1:150237745-150238024(-)$1	1	15	44	8.8294
((((.(((...((....))..))).))))	chr11:67165681-67165961(-)$1	1	191	220	10.5325
((((((....(((...)))....))))))	chr1:173457404-173457646(+)$1	1	117	146	9.8555
(..(((((((((......)))))))))..	chr17:7306538-7306811(-)$1	1	25	54	10.3146
((.((((...(((....))))))))))).	chr15:79214307-79214637(-)$1	1	251	280	10.7979
.(((.(((((.((....))))))).))).	chr19:18545753-18545990(-)$1	1	123	152	10.3552
)))))))((.(((....))).))((((((	chr6:158094594-158094885(+)$1	1	175	204	10.4859
(((((((((.(((....)))...)).)))	chr17:45922652-45922877(-)$1	1	173	202	12.4073
(.(((((((((((....)).))))))).)	chr16:767122-767406(+)$1	1	227	256	10.7127
(..((((((((......))).)))))..)	chr19:46273083-46273342(-)$1	1	38	67	9.4571
((((.((((.(((....))).))))....	chr7:98993976-98994225(-)$1	1	146	175	10.1905
(((....((((((....))))))....))	chr6:43005325-43005642(-)$1	1	209	238	9.8856
((((((...((((....)))).)))))).	chr14:24701355-24701587(-)$1	1	21	50	9.9357
.(((((..((..(....)..)))))))..	chr8:101734015-101734218(-)$1	1	145	174	9.9623
((((...((.(((....))).))...)))	chr6:30695763-30696006(-)$1	1	82	111	11.4988
.(((.((((.(((....))))))).))).	chr6:43738602-43738817(+)$1	1	153	182	9.5166
((..(((((((......)))...))))..	chrX:152961798-152962014(+)$1	1	13	42	9.5776
.(((..(((((((....))).).)))..)	chr19:55741462-55741724(-)$1	1	149	178	12.5163
(.(.(((...(((....))).))).).))	chr19:18418224-18418452(-)$1	1	118	147	12.5001
...(((((((.((...)).))))))))))	chr12:124499179-124499401(+)$1	1	112	141	9.0094
..(((((((.(..(....)..).))))))	chr15:74701692-74701988(-)$1	1	220	249	10.8692
.(((((((.((((....)))).)))))))	chr16:70605745-70606000(+)$1	1	31	60	10.6904
(((...(((((((....))))))).))).	chr16:31202617-31202847(+)$1	1	138	167	11.5240
(..(((((..(((.....))).)))))..	chr20:36146180-36146428(-)$1	1	215	244	9.2211
((..(((((((((....))))))...)))	chr17:4800805-4801054(+)$1	1	147	176	9.8684
((((((.((((((....))).))).))))	chr9:138824941-138825193(-)$1	1	100	129	11.8918
.((.((..(..((....))..).)).)).	chr14:23790878-23791121(+)$1	1	73	102	10.1209
))(((((...(((....)))...))))).	chr7:75615168-75615397(+)$1	1	113	142	11.6827
((((((....(((....)))..)))))).	chr7:98930859-98931141(+)$1	1	17	46	11.3897
(.(((((((.(((....))).))))))).	chr19:3062270-3062520(-)$1	1	35	64	13.5184
(((((...(((((....)))..))...))	chr11:67379490-67379746(+)$1	1	131	160	11.3717
(.(((.(((((((....)))))))))).)	chr19:10941730-10941993(+)$1	1	39	68	11.3606
...(((.((.((......))..)).))).	chr7:98993771-98994002(-)$1	1	100	129	9.0157
)..((((((((((....))))))))))))	chr16:3071985-3072269(+)$1	1	113	142	9.2584
((((..(((((((....)))))))...))	chr22:38352679-38352955(+)$1	1	7	36	10.6971
.((((((.(((......))).))))))))	chrX:153609616-153609837(+)$1	1	173	202	9.3216
(((.((((.(.((....))).)))).)))	chrX:153195462-153195783(-)$1	1	95	124	10.1717
((..(((((((((....)))...))))))	chrX:152961435-152961689(+)$1	1	199	228	12.0069
(.(((.((..(.(....)).)).)))...	chr8:21995793-21996105(-)$1	1	214	243	11.5899
...(((((..(((....))).)))))...	chr19:14230419-14230751(-)$1	1	174	203	13.1833
(.((((.(((..(....)..))).)))))	chr16:88763052-88763320(-)$1	1	238	267	9.4061
(...(((((((((....)))))).))).)	chr19:11664169-11664418(-)$1	1	86	115	9.9874
((((((....(((....)))...))))))	chr12:49952138-49952574(-)$1	1	253	282	13.5290
.(((((((.(.(((...))).)))))).)	chr19:35770258-35770532(+)$1	1	186	215	9.2448
(((.((((...((....))..))))))).	chr7:130146168-130146421(-)$1	1	41	70	10.8694
(.((((((((.((....))...)))))))	chr22:39258315-39258626(-)$1	1	121	150	9.3269

#PSSM
d : 0.14	e : 0.14	f : 0.14	c : 0.10	[ : 0.08	b : 0.07	a : 0.05	! : 0.05	g : 0.05	$ : 0.03	" : 0.03	h : 0.01	= : 0.01	: : 0.01	# : 0.01	
[ : 0.16	e : 0.12	c : 0.12	f : 0.12	d : 0.10	g : 0.08	! : 0.08	b : 0.05	" : 0.05	h : 0.01	= : 0.01	# : 0.01	: : 0.01	
g : 0.14	! : 0.14	f : 0.14	c : 0.14	e : 0.12	d : 0.07	b : 0.05	" : 0.05	h : 0.03	[ : 0.01	= : 0.01	a : 0.01	# : 0.01	: : 0.01	
e : 0.17	g : 0.16	f : 0.14	[ : 0.10	c : 0.10	! : 0.07	d : 0.07	# : 0.03	h : 0.03	" : 0.03	i : 0.01	b : 0.01	= : 0.01	
g : 0.16	f : 0.16	e : 0.14	c : 0.10	d : 0.08	[ : 0.07	i : 0.05	! : 0.05	b : 0.03	# : 0.03	h : 0.03	" : 0.03	= : 0.01	
g : 0.16	e : 0.16	f : 0.14	d : 0.12	c : 0.08	i : 0.05	! : 0.05	" : 0.05	b : 0.03	# : 0.03	h : 0.03	[ : 0.03	= : 0.01	
g : 0.19	c : 0.12	e : 0.12	d : 0.10	# : 0.08	f : 0.07	i : 0.05	! : 0.05	" : 0.05	[ : 0.05	h : 0.03	= : 0.01	b : 0.01	
g : 0.17	c : 0.10	f : 0.10	b : 0.10	" : 0.08	e : 0.08	d : 0.08	! : 0.07	i : 0.05	# : 0.05	= : 0.01	[ : 0.01	h : 0.01	
g : 0.14	c : 0.14	b : 0.14	" : 0.12	f : 0.08	! : 0.07	[ : 0.07	i : 0.05	# : 0.05	d : 0.03	e : 0.01	a : 0.01	= : 0.01	h : 0.01	
[ : 0.23	" : 0.10	g : 0.08	c : 0.08	d : 0.07	f : 0.07	! : 0.07	i : 0.05	b : 0.05	# : 0.05	a : 0.05	e : 0.01	= : 0.01	h : 0.01	
c : 0.44	[ : 0.08	! : 0.07	d : 0.07	g : 0.07	i : 0.05	" : 0.05	f : 0.05	b : 0.03	a : 0.03	= : 0.01	
c : 0.41	b : 0.19	! : 0.07	d : 0.07	i : 0.05	o : 0.05	f : 0.05	g : 0.05	= : 0.01	[ : 0.01	
c : 0.41	b : 0.16	o : 0.10	a : 0.07	d : 0.07	f : 0.05	g : 0.05	i : 0.03	! : 0.01	= : 0.01	
m : 0.78	o : 0.10	l : 0.05	a : 0.01	n : 0.01	c : 0.01	
m : 0.80	o : 0.10	l : 0.07	n : 0.01	
m : 0.80	o : 0.10	l : 0.07	n : 0.01	
m : 0.80	o : 0.10	c : 0.03	b : 0.01	n : 0.01	l : 0.01	
c : 0.44	b : 0.16	a : 0.07	d : 0.07	o : 0.05	f : 0.05	g : 0.05	i : 0.03	m : 0.01	n : 0.01	= : 0.01	
c : 0.46	b : 0.17	d : 0.07	i : 0.05	2 : 0.05	f : 0.05	g : 0.05	a : 0.03	] : 0.01	= : 0.01	
c : 0.42	2 : 0.12	d : 0.07	g : 0.07	i : 0.05	] : 0.05	f : 0.05	3 : 0.03	b : 0.03	4 : 0.01	e : 0.01	= : 0.01	a : 0.01	
] : 0.24	2 : 0.14	3 : 0.12	d : 0.10	g : 0.08	f : 0.07	i : 0.05	c : 0.05	b : 0.05	4 : 0.01	e : 0.01	= : 0.01	
3 : 0.12	g : 0.12	c : 0.10	b : 0.10	f : 0.08	d : 0.08	] : 0.07	2 : 0.07	a : 0.07	i : 0.05	e : 0.05	4 : 0.01	= : 0.01	
g : 0.16	f : 0.14	e : 0.14	c : 0.10	b : 0.08	d : 0.08	3 : 0.08	] : 0.07	i : 0.05	4 : 0.01	= : 0.01	h : 0.01	
g : 0.19	e : 0.17	f : 0.12	c : 0.10	d : 0.10	b : 0.07	i : 0.05	4 : 0.03	3 : 0.03	] : 0.03	> : 0.01	= : 0.01	h : 0.01	
e : 0.16	g : 0.14	] : 0.14	f : 0.12	d : 0.10	3 : 0.07	c : 0.07	i : 0.05	4 : 0.03	b : 0.03	> : 0.01	= : 0.01	h : 0.01	
e : 0.16	c : 0.16	g : 0.14	f : 0.14	d : 0.07	3 : 0.07	i : 0.05	] : 0.05	4 : 0.03	b : 0.01	> : 0.01	6 : 0.01	a : 0.01	= : 0.01	h : 0.01	
c : 0.16	g : 0.14	e : 0.14	f : 0.14	3 : 0.10	d : 0.07	b : 0.03	] : 0.03	4 : 0.03	2 : 0.03	> : 0.01	i : 0.01	6 : 0.01	= : 0.01	h : 0.01	
2 : 0.16	c : 0.16	f : 0.14	g : 0.12	3 : 0.07	d : 0.07	] : 0.07	e : 0.05	b : 0.03	a : 0.01	> : 0.01	6 : 0.01	= : 0.01	F : 0.01	h : 0.01	
2 : 0.17	f : 0.12	3 : 0.10	g : 0.10	] : 0.10	c : 0.08	b : 0.07	: : 0.05	d : 0.03	> : 0.01	6 : 0.01	= : 0.01	e : 0.01	F : 0.01	a : 0.01	h : 0.01	

#score	601.6838731199182
#seq	56
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_CDS_m2_run1.txt

#BEAR
cc"""bb!!bb!!bboooooobb]bb22bb22ccc	chr17:1553944-1554203(-)$1	259	97	132	15.7250
DDeeeeeccc"""bboooooobb333ccc]eeeee	chr12:125292257-125292516(-)$1	259	99	134	14.4858
eee[cccccc!!cccooooooccc4444ccc333c	chr1:8922876-8923102(-)$1	226	45	80	16.5989
%%eeeee!!ccc[bboooooobbccc22eeeee77	chr8:11705161-11705438(-)$1	277	164	199	12.9071
"ccc"""dddd[cccooooooccc]dddd]ccc]g	chr12:125262891-125263169(-)$1	278	197	232	14.6543
d"""bb!!eeeeebboooooobb]eeeee22bb33	chr4:155506541-155506809(-)$1	268	131	166	14.8918
ccc!!a$$$$$ddddoooooodddda22ccc22cc	chr12:53298479-53298795(-)$1	316	208	243	13.4933
eccc####ccc!!ccclllccc4444ccc333ccc	chr6:31603892-31604150(+)$1	258	122	157	13.1401
dddda[ffffff[bboooooobbffffff]a]ddd	chr11:116701234-116701451(+)$1	217	52	87	13.7781
======&&&&&&&bboooooobb4444========	chr19:6677781-6678029(-)$1	248	159	194	13.8118
eeedddd[gggggggooooooggggggg]dddd]e	chr14:94849074-94849323(-)$1	249	200	235	12.7342
]cccggggggg"""cccmmmmccc333ggggggg:	chr20:2442226-2442551(-)$1	325	233	268	11.4617
###bb[ffffffcccooooooccc]ffffff]bbf	chr15:69747492-69747717(+)$1	225	26	61	13.6532
iiiiiii[ccc[cccooooooccc]ccc]iiiiii	chr19:45322744-45322976(+)$1	232	35	70	16.4345
ccc"""eeeee[cccooooooccceeeee333ccc	chrX:47074213-47074561(+)$1	348	27	62	15.9833
dddd[bbbb!!a[bboooooobb]a22bb]bb]dd	chr11:61732060-61732302(-)$1	242	56	91	13.8478
]cccdddd[ccc!!aooooooa22ccc]dddd:ii	chrX:152953958-152954215(+)$1	257	110	145	12.4739
b"""iiiiiiiiibblllbb]iiiiiiiii333bb	chr6:34212862-34213083(+)$1	221	110	145	12.2126
========[ccc[cccmmmmccc]ccc]=======	chr17:6917599-6917924(+)$1	325	253	288	12.8080
###dddd[bb"""bboooooobb]bb]dddd22ff	chr19:45412073-45412304(+)$1	231	124	159	15.3282
[dddd[dddd[ddddoooooodddd22dddd]ddd	chr3:186338561-186338793(+)$1	232	77	112	12.1075
bb[bb!!ffffff[aooooooa]ffffff4444bb	chr1:230846078-230846334(-)$1	256	11	46	12.3366
ggg!!eeeee[ddddoooooodddd333eeeee55	chr19:45411832-45412069(+)$1	237	132	167	12.7599
[a[ddddeeeee[bboooooobb]eeeee]dddd]	chr17:80194941-80195218(+)$1	277	157	192	14.4467
==========eeeeennnnneeeee333=======	chr11:116707747-116707973(-)$1	226	45	80	11.9560
"bb[bb[==========mmmm==========]bbb	chr19:56203112-56203408(+)$1	296	182	217	11.3528
ccc!!eeeee"""cccnnnnnccc333eeeee22c	chr15:44085960-44086290(+)$1	330	44	79	13.5003
c[ccc[eeeee!!ccclllccceeeee]ccc]ccc	chr6:31895698-31896005(+)$1	307	245	280	11.5035
cccggggggg"""bboooooobb4444ggggggg]	chr15:69747422-69747689(+)$1	267	13	48	17.8813
d"""bbccc!!ddddooooooddddccc]bb4444	chr15:72491770-72492100(-)$1	330	174	209	14.0405
c"""===========oooooo===========333	chr9:116831892-116832124(-)$1	232	29	64	17.8191
bb[==========bblllbb]==========]bbd	chr10:95353519-95353730(-)$1	211	150	185	12.0734
===========!!bboooooobb]===========	chr7:73011586-73011821(-)$1	235	152	187	18.8265
ccc"""ccceeeeebbnnnnnbb333eeeee]ccc	chr7:5568059-5568338(-)$1	279	221	256	12.8040
cc[eeeee####cccooooooccc333eeeeeccc	chr1:93645612-93645884(-)$1	272	228	263	16.0391
cc"""ggggggg[cccnnnnncccgggggggccce	chr22:42273214-42273470(+)$1	256	207	242	13.1782
"ccc[ggggggg[cccnnnnncccggggggg22cc	chr17:76968357-76968626(-)$1	269	125	160	12.9377
####bb!!ccc!!bboooooobb333ccc22bb44	chr12:54058893-54059204(-)$1	311	117	152	17.2098
cc[ggggggga!!bboooooobb22a]gggggggc	chr6:35437042-35437318(+)$1	276	38	73	17.3721
d:ggggggg####bboooooobb4444gggggggB	chr19:49469804-49470046(+)$1	242	161	196	15.6552
f"""bb!!bb[ddddoooooodddd]bbbb333ff	chr5:176522550-176522779(+)$1	229	62	97	13.3343
###dddd[bb"""bboooooobb]bb]dddd22ff	chr19:45412169-45412442(+)$1	273	28	63	15.3282
==========="""bbnnnnnbb]===========	chr14:95053795-95054060(+)$1	265	215	250	15.0077
ccc[hhhhhhhhcccooooooccc]hhhhhhhhcc	chr14:101200381-101200605(+)$1	224	89	124	12.9214
ccc[hhhhhhhhcccooooooccc]hhhhhhhhcc	chr14:101200405-101200669(+)$1	264	65	100	12.9214
ee[a!!eeeee!!cccmmmmccc]eeeee]a]eee	chr7:5568138-5568417(-)$1	279	162	197	11.0976
===========!!bboooooobb]===========	chr7:73011521-73011742(-)$1	221	73	108	18.8265
ff!!ccc[ccc!!cccnnnnnccc333cccccc]f	chr2:220432810-220433080(-)$1	270	97	132	13.7229
ffffffffccc[cccooooooccc]ccc]ffffff	chr8:145149895-145150169(+)$1	274	170	205	13.5589
gggg[ccc[a"""bboooooobb333a]ccc]ggg	chr2:220404152-220404376(-)$1	224	41	76	17.8209
gggggggbb!!ddddoooooodddd4444bb]ggg	chr16:50667286-50667572(+)$1	286	21	56	13.5561
b$$$$$eeeee!!bboooooobb22eeeee88888	chr14:94844661-94844891(-)$1	230	129	164	13.2651

#otherMatches

#Seq PSSM
UGUAUGCCUGACCGUUUCCCUGCCUCCUGCUUCAG	chr17:1553944-1554203(-)$1	259	97	132	15.7250
GCUUCGUGGCUCCCAAAACCCUGUUUGCCAACGGG	chr12:125292257-125292516(-)$1	259	99	134	14.4858
AAAUGCCUGCAAAGCUUGUCCGCUGUAAGCAAAUG	chr1:8922876-8923102(-)$1	226	45	80	16.5989
CAUGCACGGGGGAGGGAGAUACCCCCAAGUGUAGC	chr8:11705161-11705438(-)$1	277	164	199	12.9071
CGCCCUGGCACACAUACACACAUGCGUGCAGGCUU	chr12:125262891-125263169(-)$1	278	197	232	14.6543
ucuccuuuggggaagccuucccugucccccuagac	chr4:155506541-155506809(-)$1	268	131	166	14.8918
UGGGAGGCAUCACCGCAGUUACGGUCAACCAGAGC	chr12:53298479-53298795(-)$1	316	208	243	13.4933
CAGCCCCUCCCUCAGCACUGCUCUCUGGGUUAGCU	chr6:31603892-31604150(+)$1	258	122	157	13.1401
AACAGAGGUGCCAUGCAGCCCCGGGUACUCCUUGU	chr11:116701234-116701451(+)$1	217	52	87	13.7781
CAGAUAAAGCUUCAGUUAUAUCUCACGUGUCUGGA	chr19:6677781-6678029(-)$1	248	159	194	13.8118
UGGAUAAGUUUUUGGAGGAUGUUAAAAAGUUGUAC	chr14:94849074-94849323(-)$1	249	200	235	12.7342
UGGUUUAUAAUAAACUCUUAAGAGAACAUUAUAAU	chr20:2442226-2442551(-)$1	325	233	268	11.4617
ACGUCAACAUUGGGAGCCUCAUCUGCAAUGUAGGG	chr15:69747492-69747717(+)$1	225	26	61	13.6532
GUGUGGGGCAGACAGAGCCCACUGCCUGACCCACG	chr19:45322744-45322976(+)$1	232	35	70	16.4345
CGUGCGGGCGCUGGUGCUUGAGCUGUGCUGUAACG	chrX:47074213-47074561(+)$1	348	27	62	15.9833
UAUCUCUUUGACAAGCACACCCUGGGAGACAGUGA	chr11:61732060-61732302(-)$1	242	56	91	13.8478
UCCGGCGACGAGAAGAAGGGCCCCCUCAUcgcgcc	chrX:152953958-152954215(+)$1	257	110	145	12.4739
CUGCGUCCCCACUCCCUUGGUGGUGGGGACAUUGC	chr6:34212862-34213083(+)$1	221	110	145	12.2126
CCCUGUGUCUGUGCUUGAGUGGGGGCGAGCACGGG	chr17:6917599-6917924(+)$1	325	253	288	12.8080
CCUGGCCGGCCAGCCGCUACAGGAGCGGGCCCAGG	chr19:45412073-45412304(+)$1	231	124	159	15.3282
GUGGUGCAGCCUAGUGUUGGUGCUGCUGCUGGGCC	chr3:186338561-186338793(+)$1	232	77	112	12.1075
GCUGCAAAACUUGACACCGAAGACAAGUUGAGGGC	chr1:230846078-230846334(-)$1	256	11	46	12.3366
GGCGAGGUGCAGGCCAUGCUCGGCCAGAGCACCGA	chr19:45411832-45412069(+)$1	237	132	167	12.7599
GGCGGCAGCAGGUAGCCCUGUCUUCCUGUGUGCCC	chr17:80194941-80195218(+)$1	277	157	192	14.4467
GGCUCAGAUCUCAGCCCACAGCUGGCCUGAUCUGG	chr11:116707747-116707973(-)$1	226	45	80	11.9560
CCACGCCGGCCUCUGGGGACCCCUGGAGGCCUGCU	chr19:56203112-56203408(+)$1	296	182	217	11.3528
CGCCUGUGUGCCUGGAGCCAGUCCCACCACGCUCG	chr15:44085960-44086290(+)$1	330	44	79	13.5003
GAGGCUCCCUGUGGGCUUUGCUCAGGGUGCUACAC	chr6:31895698-31896005(+)$1	307	245	280	11.5035
UUCGUUUUUGGCUGCGUGAGUGCUUAACAAGGACA	chr15:69747422-69747689(+)$1	267	13	48	17.8813
AGCAACGCUUGUAGAACUCACUCUGGGCUGUAACG	chr15:72491770-72492100(-)$1	330	174	209	14.0405
AAAUCCGGGUCUAGGAUGGCCCCUGGGCCUGGUCC	chr9:116831892-116832124(-)$1	232	29	64	17.8191
GGUGAGUCAGGAGCAGGGUGCCUUCUGGCUCUUCC	chr10:95353519-95353730(-)$1	211	150	185	12.0734
UGCCUUUGGGCCUUGCUUCUCCAUGCCCAGAGGCA	chr7:73011586-73011821(-)$1	235	152	187	18.8265
CUUCACCACCACGGCCGAGCGGGAAAUCGUGCGUG	chr7:5568059-5568338(-)$1	279	221	256	12.8040
CUACCAGCCCAUGCCCCUGAAGGCCUCGCUGGAGA	chr1:93645612-93645884(-)$1	272	228	263	16.0391
UCAGGUAGGUGGAGGCCCCUUGCCCCACCUGGGCA	chr22:42273214-42273470(+)$1	256	207	242	13.1782
ACUGCUGCUGCCCAGGAGCGACCUGGCGGUGCCCA	chr17:76968357-76968626(-)$1	269	125	160	12.9377
UCCACCUCCCAUAGUUCUCCCGCGUCUGGUUGGCC	chr12:54058893-54059204(-)$1	311	117	152	17.2098
UGCGGUCCCAGACCCUUCACCGGCCCUUGGGACCC	chr6:35437042-35437318(+)$1	276	38	73	17.3721
GAAAGGCUCACUCUCAAGCACGACUAAGAGCCUUC	chr19:49469804-49470046(+)$1	242	161	196	15.6552
CGACCUCAGCCCCGACGGUCCUCGGAGCAGUGAGG	chr5:176522550-176522779(+)$1	229	62	97	13.3343
CCUGGCCGGCCAGCCGCUACAGGAGCGGGCCCAGG	chr19:45412169-45412442(+)$1	273	28	63	15.3282
GAAGGAGCUGCACAGAGGCUUUCAGCAGCUCCUUC	chr14:95053795-95054060(+)$1	265	215	250	15.0077
CCUGUUGUGUUGCAGCUCCCCCUGCCAGCACGGAG	chr14:101200381-101200605(+)$1	224	89	124	12.9214
CCUGUUGUGUUGCAGCUCCCCCUGCCAGCACGGAG	chr14:101200405-101200669(+)$1	264	65	100	12.9214
GGACUCCGGUGACGGGGUCACCCACACUGUGCCCA	chr7:5568138-5568417(-)$1	279	162	197	11.0976
UGCCUUUGGGCCUUGCUUCUCCAUGCCCAGAGGCA	chr7:73011521-73011742(-)$1	221	73	108	18.8265
UGCUGGAAUGUAAAGUACCCAACUCCCGCAUCCCC	chr2:220432810-220433080(-)$1	270	97	132	13.7229
ggcgcgcgugcccggggUCUGCUGUGCAGCGCGCG	chr8:145149895-145150169(+)$1	274	170	205	13.5589
GAGCUGCUGGAGAGCCUGGAUGUGUACGAGCUGUU	chr2:220404152-220404376(-)$1	224	41	76	17.8209
GCACUUUGUGAGGUCCCCCAAGGCCCAGGGCAAGA	chr16:50667286-50667572(+)$1	286	21	56	13.5561
CCCCUCCAUCCCUGGCCCCCUCCCUGGAUGACAUU	chr14:94844661-94844891(-)$1	230	129	164	13.2651

#DB
((...((..((..((......)).))..))..)))	chr17:1553944-1554203(-)$1	1	97	132	15.7250
((((((((((...((......))...))).)))))	chr12:125292257-125292516(-)$1	1	99	134	14.4858
(((.((((((..(((......)))....)))...)	chr1:8922876-8923102(-)$1	1	45	80	16.5989
..(((((..(((.((......)))))..)))))..	chr8:11705161-11705438(-)$1	1	164	199	12.9071
.(((...((((.(((......))).)))).))).)	chr12:125262891-125263169(-)$1	1	197	232	14.6543
(...((..(((((((......)).)))))..))..	chr4:155506541-155506809(-)$1	1	131	166	14.8918
(((..(.....((((......)))))..)))..))	chr12:53298479-53298795(-)$1	1	208	243	13.4933
((((....(((..(((...)))....)))...)))	chr6:31603892-31604150(+)$1	1	122	157	13.1401
(((((.((((((.((......)))))))).).)))	chr11:116701234-116701451(+)$1	1	52	87	13.7781
((((((.......((......))....))))))))	chr19:6677781-6678029(-)$1	1	159	194	13.8118
(((((((.(((((((......))))))).)))).)	chr14:94849074-94849323(-)$1	1	200	235	12.7342
.)))(((((((...(((....)))...))))))).	chr20:2442226-2442551(-)$1	1	233	268	11.4617
...((.(((((((((......))).)))))).)))	chr15:69747492-69747717(+)$1	1	26	61	13.6532
(((((((.(((.(((......))).))).))))))	chr19:45322744-45322976(+)$1	1	35	70	16.4345
(((...(((((.(((......))))))))...)))	chrX:47074213-47074561(+)$1	1	27	62	15.9833
((((.((((..(.((......)).)..)).)).))	chr11:61732060-61732302(-)$1	1	56	91	13.8478
.)))((((.(((..(......)..))).)))).((	chrX:152953958-152954215(+)$1	1	110	145	12.4739
(...(((((((((((...)).)))))))))...))	chr6:34212862-34213083(+)$1	1	110	145	12.2126
((((((((.(((.(((....))).))).)))))))	chr17:6917599-6917924(+)$1	1	253	288	12.8080
...((((.((...((......)).)).))))..))	chr19:45412073-45412304(+)$1	1	124	159	15.3282
.((((.((((.((((......))))..)))).)))	chr3:186338561-186338793(+)$1	1	77	112	12.1075
((.((..((((((.(......).))))))....))	chr1:230846078-230846334(-)$1	1	11	46	12.3366
(((..(((((.((((......))))...)))))..	chr19:45411832-45412069(+)$1	1	132	167	12.7599
.(.(((((((((.((......)).))))).)))).	chr17:80194941-80195218(+)$1	1	157	192	14.4467
(((((((((((((((.....)))))...)))))))	chr11:116707747-116707973(-)$1	1	45	80	11.9560
.((.((.((((((((((....)))))))))).)))	chr19:56203112-56203408(+)$1	1	182	217	11.3528
(((..(((((...(((.....)))...)))))..)	chr15:44085960-44086290(+)$1	1	44	79	13.5003
(.(((.(((((..(((...)))))))).))).)))	chr6:31895698-31896005(+)$1	1	245	280	11.5035
((((((((((...((......))....))))))).	chr15:69747422-69747689(+)$1	1	13	48	17.8813
(...(((((..((((......))))))).))....	chr15:72491770-72492100(-)$1	1	174	209	14.0405
(...(((((((((((......)))))))))))...	chr9:116831892-116832124(-)$1	1	29	64	17.8191
((.((((((((((((...)).)))))))))).))(	chr10:95353519-95353730(-)$1	1	150	185	12.0734
(((((((((((..((......)).)))))))))))	chr7:73011586-73011821(-)$1	1	152	187	18.8265
(((...((((((((((.....))...))))).)))	chr7:5568059-5568338(-)$1	1	221	256	12.8040
((.(((((....(((......)))...))))))))	chr1:93645612-93645884(-)$1	1	228	263	16.0391
((...(((((((.(((.....))))))))))))))	chr22:42273214-42273470(+)$1	1	207	242	13.1782
.(((.(((((((.(((.....))))))))))..))	chr17:76968357-76968626(-)$1	1	125	160	12.9377
....((..(((..((......))...)))..))..	chr12:54058893-54059204(-)$1	1	117	152	17.2098
((.((((((((..((......))..).))))))))	chr6:35437042-35437318(+)$1	1	38	73	17.3721
).(((((((....((......))....))))))))	chr19:49469804-49470046(+)$1	1	161	196	15.6552
(...((..((.((((......)))).))))...))	chr5:176522550-176522779(+)$1	1	62	97	13.3343
...((((.((...((......)).)).))))..))	chr19:45412169-45412442(+)$1	1	28	63	15.3282
(((((((((((...((.....)).)))))))))))	chr14:95053795-95054060(+)$1	1	215	250	15.0077
(((.(((((((((((......))).))))))))))	chr14:101200381-101200605(+)$1	1	89	124	12.9214
(((.(((((((((((......))).))))))))))	chr14:101200405-101200669(+)$1	1	65	100	12.9214
((.(..(((((..(((....))).))))).).)))	chr7:5568138-5568417(-)$1	1	162	197	11.0976
(((((((((((..((......)).)))))))))))	chr7:73011521-73011742(-)$1	1	73	108	18.8265
((..(((.(((..(((.....)))...)))))).)	chr2:220432810-220433080(-)$1	1	97	132	13.7229
(((((((((((.(((......))).))).))))))	chr8:145149895-145150169(+)$1	1	170	205	13.5589
((((.(((.(...((......))...).))).)))	chr2:220404152-220404376(-)$1	1	41	76	17.8209
(((((((((..((((......))))....)).)))	chr16:50667286-50667572(+)$1	1	21	56	13.5561
(.....(((((..((......))..))))).....	chr14:94844661-94844891(-)$1	1	129	164	13.2651

#PSSM
c : 0.24	= : 0.11	d : 0.09	e : 0.07	# : 0.07	b : 0.07	" : 0.05	g : 0.05	f : 0.05	] : 0.03	[ : 0.03	D : 0.01	% : 0.01	i : 0.01	
c : 0.30	= : 0.11	" : 0.09	# : 0.07	e : 0.05	d : 0.05	b : 0.05	g : 0.05	f : 0.03	D : 0.01	% : 0.01	i : 0.01	a : 0.01	[ : 0.01	: : 0.01	$ : 0.01	
c : 0.24	" : 0.13	= : 0.11	[ : 0.11	e : 0.07	# : 0.07	g : 0.07	d : 0.05	i : 0.01	b : 0.01	! : 0.01	f : 0.01	$ : 0.01	
" : 0.17	d : 0.13	= : 0.13	c : 0.11	g : 0.09	[ : 0.07	! : 0.07	e : 0.05	b : 0.03	i : 0.01	# : 0.01	a : 0.01	f : 0.01	$ : 0.01	
= : 0.15	b : 0.13	d : 0.11	" : 0.09	g : 0.09	! : 0.07	e : 0.05	c : 0.05	[ : 0.05	i : 0.03	h : 0.03	# : 0.01	a : 0.01	f : 0.01	$ : 0.01	
= : 0.15	b : 0.13	g : 0.13	e : 0.09	d : 0.09	[ : 0.07	c : 0.05	" : 0.05	i : 0.03	! : 0.03	h : 0.03	a : 0.01	# : 0.01	f : 0.01	$ : 0.01	
e : 0.17	g : 0.13	= : 0.13	d : 0.11	c : 0.09	! : 0.07	f : 0.05	b : 0.03	i : 0.03	h : 0.03	" : 0.01	$ : 0.01	# : 0.01	& : 0.01	[ : 0.01	
e : 0.15	= : 0.15	g : 0.11	! : 0.09	c : 0.09	[ : 0.09	f : 0.07	d : 0.05	b : 0.03	h : 0.03	$ : 0.01	# : 0.01	& : 0.01	i : 0.01	
c : 0.17	e : 0.15	g : 0.13	= : 0.13	b : 0.09	f : 0.05	[ : 0.05	! : 0.03	d : 0.03	h : 0.03	$ : 0.01	& : 0.01	i : 0.01	# : 0.01	
c : 0.19	e : 0.17	= : 0.13	g : 0.11	b : 0.07	f : 0.05	! : 0.05	d : 0.03	# : 0.03	h : 0.03	$ : 0.01	& : 0.01	i : 0.01	a : 0.01	
c : 0.15	e : 0.15	" : 0.11	= : 0.11	! : 0.07	g : 0.07	f : 0.05	[ : 0.05	# : 0.03	h : 0.03	b : 0.01	d : 0.01	$ : 0.01	& : 0.01	i : 0.01	a : 0.01	
! : 0.21	" : 0.15	d : 0.11	[ : 0.07	e : 0.07	c : 0.05	f : 0.05	g : 0.05	= : 0.05	# : 0.03	h : 0.03	& : 0.01	a : 0.01	i : 0.01	
! : 0.21	c : 0.17	" : 0.15	[ : 0.13	d : 0.11	e : 0.05	= : 0.05	& : 0.01	g : 0.01	i : 0.01	f : 0.01	# : 0.01	
b : 0.38	c : 0.32	d : 0.11	" : 0.03	e : 0.03	= : 0.03	g : 0.01	! : 0.01	[ : 0.01	
b : 0.42	c : 0.34	d : 0.11	a : 0.03	= : 0.03	g : 0.01	e : 0.01	
o : 0.71	c : 0.17	l : 0.03	b : 0.03	n : 0.01	= : 0.01	
o : 0.71	n : 0.13	l : 0.07	m : 0.03	c : 0.01	= : 0.01	
o : 0.71	n : 0.13	l : 0.07	m : 0.07	
o : 0.71	n : 0.13	m : 0.07	l : 0.03	b : 0.03	
o : 0.71	n : 0.13	m : 0.07	c : 0.03	b : 0.03	
o : 0.71	n : 0.11	c : 0.07	m : 0.03	] : 0.03	e : 0.01	
b : 0.38	c : 0.34	d : 0.11	= : 0.05	a : 0.03	g : 0.01	i : 0.01	e : 0.01	
b : 0.38	c : 0.30	d : 0.11	= : 0.05	e : 0.03	4 : 0.01	g : 0.01	2 : 0.01	i : 0.01	] : 0.01	
c : 0.28	] : 0.21	d : 0.11	3 : 0.07	4 : 0.07	2 : 0.05	= : 0.05	f : 0.03	e : 0.03	g : 0.01	i : 0.01	
3 : 0.15	] : 0.11	e : 0.11	d : 0.11	= : 0.11	4 : 0.09	b : 0.05	c : 0.05	g : 0.05	f : 0.03	2 : 0.03	a : 0.01	i : 0.01	
3 : 0.19	4 : 0.11	c : 0.11	e : 0.11	= : 0.11	b : 0.05	f : 0.05	g : 0.05	a : 0.03	2 : 0.03	h : 0.03	d : 0.01	i : 0.01	] : 0.01	
c : 0.15	e : 0.13	3 : 0.11	= : 0.11	2 : 0.09	4 : 0.09	f : 0.05	g : 0.05	] : 0.05	h : 0.03	d : 0.01	i : 0.01	b : 0.01	a : 0.01	
e : 0.15	c : 0.13	= : 0.13	g : 0.13	d : 0.07	] : 0.07	2 : 0.05	f : 0.05	4 : 0.03	b : 0.03	3 : 0.03	h : 0.03	i : 0.01	
e : 0.19	= : 0.17	c : 0.15	g : 0.11	d : 0.09	] : 0.07	b : 0.05	f : 0.05	h : 0.03	i : 0.01	4 : 0.01	
= : 0.17	] : 0.11	e : 0.11	g : 0.11	c : 0.09	d : 0.09	b : 0.07	2 : 0.03	3 : 0.03	f : 0.03	i : 0.03	h : 0.03	4 : 0.01	
= : 0.17	e : 0.11	c : 0.11	d : 0.11	g : 0.11	3 : 0.07	2 : 0.05	b : 0.05	a : 0.03	f : 0.03	h : 0.03	i : 0.01	4 : 0.01	8 : 0.01	
] : 0.19	= : 0.13	2 : 0.09	e : 0.09	3 : 0.09	g : 0.07	c : 0.05	b : 0.05	d : 0.05	4 : 0.03	h : 0.03	i : 0.01	f : 0.01	8 : 0.01	
c : 0.17	= : 0.11	g : 0.11	b : 0.09	2 : 0.09	e : 0.07	3 : 0.07	d : 0.07	4 : 0.03	h : 0.03	i : 0.01	] : 0.01	: : 0.01	f : 0.01	8 : 0.01	
c : 0.21	= : 0.11	g : 0.11	b : 0.09	d : 0.07	f : 0.07	3 : 0.05	] : 0.05	e : 0.03	i : 0.03	4 : 0.03	7 : 0.01	5 : 0.01	2 : 0.01	8 : 0.01	
c : 0.24	= : 0.11	f : 0.11	e : 0.07	d : 0.07	g : 0.05	b : 0.05	3 : 0.03	i : 0.03	] : 0.03	4 : 0.03	7 : 0.01	: : 0.01	5 : 0.01	B : 0.01	8 : 0.01	

#score	737.587429513675
#seq	52
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_CDS_m1_run2.txt

#BEAR
[gggggggtttttttttttggggggg	chr10:79795009-79795222(+)$1	213	27	53	22.6251
cgggggggvvvvvvvvvvvvvggggg	chr3:142761857-142762211(+)$1	354	270	296	26.2352
Dggggggguuuuuuuuuuuugggggg	chr16:18863287-18863541(-)$1	254	148	174	23.2194
!ccc!!cccuuuuuuuuuuuuccc22	chr10:101595752-101596002(+)$1	250	196	222	24.0894
%a!!a[bbtttttttttttbb]a22a	chr16:89350150-89350388(-)$1	238	86	112	21.3423
:dddd[bbvvvvvvvvvvvvvbb]dd	chr6:7583110-7583384(+)$1	274	42	68	24.1191
=======yyyyyyyyyyyyyyyy===	chr11:68205912-68206157(+)$1	245	66	92	21.1735
fff!!cccwwwwwwwwwwwwwwccc2	chr3:148916216-148916465(-)$1	249	62	88	24.0171
c!!ffffffuuuuuuuuuuuufffff	chr9:127998776-127999060(-)$1	284	234	260	23.8633
ggggg!!avvvvvvvvvvvvva22gg	chr6:4060740-4060983(+)$1	243	90	116	25.9064
=========uuuuuuuuuuuu=====	chr17:27004993-27005247(+)$1	254	46	72	24.6787
!!ffffffuuuuuuuuuuuuffffff	chr10:101591750-101591954(+)$1	204	107	133	24.0740
=========uuuuuuuuuuuu=====	chr5:174935976-174936294(+)$1	318	93	119	24.6787
eeffffffvvvvvvvvvvvvvfffff	chr12:26834739-26835016(-)$1	277	126	152	25.4467
[cccddddvvvvvvvvvvvvvdddd2	chr11:57574317-57574554(+)$1	237	84	110	23.9880
bbffffffvvvvvvvvvvvvvfffff	chr6:56401476-56401836(-)$1	360	57	83	25.2561
ccc[a!!bbtttttttttttbb22ac	chr12:56999574-56999859(-)$1	285	193	219	22.1648
bb[fffffftttttttttttffffff	chr11:129998925-129999172(+)$1	247	209	235	22.3327
eeeee[bbvvvvvvvvvvvvvbb]ee	chr2:242289385-242289619(+)$1	234	19	45	25.6925
b$$$$$bbwwwwwwwwwwwwwwbb55	chr4:3520496-3520729(-)$1	233	135	161	21.0141
CCffffffvvvvvvvvvvvvvfffff	chr12:104340540-104340754(+)$1	214	53	79	23.3387
[dddd[bbuuuuuuuuuuuubb]ddd	chr11:6549681-6550016(+)$1	335	60	86	22.9977
c[ffffffuuuuuuuuuuuuffffff	chr12:9256867-9257078(-)$1	211	82	108	23.9705
egggggggvvvvvvvvvvvvvggggg	chr4:151836659-151836912(-)$1	253	147	173	26.1202
::ffffffvvvvvvvvvvvvvfffff	chr6:144814469-144814692(+)$1	223	32	58	23.7606
b[ffffffuuuuuuuuuuuuffffff	chr3:172070573-172070842(+)$1	269	93	119	23.7824
eeee[cccvvvvvvvvvvvvvcccee	chr20:45874802-45875173(-)$1	371	277	303	25.4289
fffff[bbvvvvvvvvvvvvvbbfff	chr7:72891432-72891693(-)$1	261	32	58	25.8255
eeeee[bbuuuuuuuuuuuubbeeee	chr2:42522245-42522492(+)$1	247	121	147	23.6567
iiiiiiiivvvvvvvvvvvvviiiii	chr16:9012850-9013095(-)$1	245	182	208	26.1274
!ccc[cccwwwwwwwwwwwwwwcccc	chr2:21260736-21260988(-)$1	252	68	94	24.3371
"gggggggvvvvvvvvvvvvvggggg	chr13:107196265-107196584(-)$1	319	260	286	26.2479
eee!!eeeeettttttttttteeeee	chr12:76448727-76448970(-)$1	243	119	145	21.0202
====[cccwwwwwwwwwwwwwwccc]	chr19:13051458-13051663(+)$1	205	71	97	24.6964
hh####bbvvvvvvvvvvvvvbbhhh	chr2:216292822-216293041(-)$1	219	35	61	25.0146
]bbeeeeevvvvvvvvvvvvveeeee	chr16:18850918-18851167(-)$1	249	103	129	23.9772
ggggg[bbvvvvvvvvvvvvvbbggg	chr2:21252669-21252874(-)$1	205	82	108	26.6101
eee[eeeeeuuuuuuuuuuuueeeee	chr5:137893533-137893777(-)$1	244	17	43	22.7651
ggggg[ccctttttttttttccc]gg	chr1:67885588-67885814(-)$1	226	181	207	23.8671
[a!!a[bbwwwwwwwwwwwwwwbb]a	chr9:127620079-127620365(-)$1	286	166	192	24.5547
ggggg[bbvvvvvvvvvvvvvbbggg	chr2:21252674-21252882(-)$1	208	90	116	26.6101
hhhhhhh[auuuuuuuuuuuua]hhh	chr10:12071255-12071575(-)$1	320	165	191	22.7016
ccc"""cccuuuuuuuuuuuuccc44	chrX:128614990-128615256(-)$1	266	183	209	24.0203
haeeeeeawwwwwwwwwwwwwwa]ee	chrX:18936728-18937049(-)$1	321	43	69	23.6873
!ggggggguuuuuuuuuuuugggggg	chr2:188352962-188353189(-)$1	227	28	54	24.4851
ffff!!bbwwwwwwwwwwwwwwbb22	chr8:141745248-141745610(-)$1	362	123	149	23.8427
iiiii[cccuuuuuuuuuuuuccc]i	chr20:61538582-61538815(-)$1	233	116	142	24.7351
bb!!ddddwwwwwwwwwwwwwwdddd	chr5:179149896-179150120(+)$1	224	138	164	22.4623
ccc"""bbvvvvvvvvvvvvvbb333	chr19:2111665-2111926(-)$1	261	104	130	26.0379
gggggggwwwwwwwwwwwwwwggggg	chr13:107220003-107220277(-)$1	274	242	268	24.5372
iiiiiiiiitttttttttttiiiiii	chr10:101591269-101591507(+)$1	238	40	66	22.9061
gg[eeeeewwwwwwwwwwwwwweeee	chr2:55461877-55462138(+)$1	261	127	153	23.6801
!!ffffffwwwwwwwwwwwwwwffff	chr3:41265916-41266172(+)$1	256	204	230	24.4177
ddfffffftttttttttttffffff3	chr2:62934099-62934469(+)$1	370	214	240	21.9239
[eeeee[attttttttttta]eeeee	chr11:720955-721226(+)$1	271	49	75	22.0783
iiiii[bbwwwwwwwwwwwwwwbb]i	chr17:62500021-62500306(-)$1	285	55	81	24.7978
h[ccc[bbvvvvvvvvvvvvvbb]cc	chr3:148895602-148895849(-)$1	247	165	191	25.8954

#otherMatches

#Seq PSSM
AGGUCUUGGAAAAUCACAGCAAGGCC	chr10:79795009-79795222(+)$1	213	27	53	22.6251
GCAGUGAAACUUAAAUUACACUUUAU	chr3:142761857-142762211(+)$1	354	270	296	26.2352
UUCAGGCAAGGAAAACAUGGUGCUUG	chr16:18863287-18863541(-)$1	254	148	174	23.2194
UAUCCGUGCCUUUGAGCACCAGCAGC	chr10:101595752-101596002(+)$1	250	196	222	24.0894
AGGACAGCAAGGAGAGGAGGCGGGAC	chr16:89350150-89350388(-)$1	238	86	112	21.3423
AAAGAGUGAGAGAGAGAAGAACAGUC	chr6:7583110-7583384(+)$1	274	42	68	24.1191
AUCAUCCUCUCUCUCUUCGUCAUGGG	chr11:68205912-68206157(+)$1	245	66	92	21.1735
AAGCACACUUCACCUCUCUAAUGUGA	chr3:148916216-148916465(-)$1	249	62	88	24.0171
GAACUUUUGUUAGGAAAAAAUUGAAA	chr9:127998776-127999060(-)$1	284	234	260	23.8633
UCAUCCAGGAAAAAAUUUAAACAAGA	chr6:4060740-4060983(+)$1	243	90	116	25.9064
GUAAGACAAACCAAGUAAACAUUGUC	chr17:27004993-27005247(+)$1	254	46	72	24.6787
CACAGGCCGGAUUGUGAACAGGUUUG	chr10:101591750-101591954(+)$1	204	107	133	24.0740
AAUUGUGGAGAGCAAAGUACAUCUAU	chr5:174935976-174936294(+)$1	318	93	119	24.6787
AGACUUUGCCAAUGAUGCCAAUAAAG	chr12:26834739-26835016(-)$1	277	126	152	25.4467
AGGAUCCAGCAAACGAUACAGUGGAU	chr11:57574317-57574554(+)$1	237	84	110	23.9880
AGGUAAUAUAACUCAUAUAAUUAUUA	chr6:56401476-56401836(-)$1	360	57	83	25.2561
UCUUGGAGGAAAUGAAGAAGCCGACA	chr12:56999574-56999859(-)$1	285	193	219	22.1648
GUGGUAUAUGUAGGGGACCAAUGUAU	chr11:129998925-129999172(+)$1	247	209	235	22.3327
AUUUUAGGAAUCACAGAACACCCAGA	chr2:242289385-242289619(+)$1	234	19	45	25.6925
ccccccgcccccacccccuccugccc	chr4:3520496-3520729(-)$1	233	135	161	21.0141
CUUGCUGUGGUUUUGUUUGAAACAGC	chr12:104340540-104340754(+)$1	214	53	79	23.3387
GCUCCACUAGAAGAAGAUGAAGAGGA	chr11:6549681-6550016(+)$1	335	60	86	22.9977
GUGCGCCUAGUAGAUGGGAAAGGCGU	chr12:9256867-9257078(-)$1	211	82	108	23.9705
AGCGAUGUAAGUAGUUUCAAAAUGUU	chr4:151836659-151836912(-)$1	253	147	173	26.1202
UAUUGUCCAGAAACAGCAAACGGACA	chr6:144814469-144814692(+)$1	223	32	58	23.7606
CGUCUCCACUCUCUGUGUCCUGGAGG	chr3:172070573-172070842(+)$1	269	93	119	23.7824
GAUGAGACGGAUUCCCCAACAGUCCA	chr20:45874802-45875173(-)$1	371	277	303	25.4289
AGAUGACAAUAAAGAUUCAGCUGCAU	chr7:72891432-72891693(-)$1	261	32	58	25.8255
AAUUCACUAACAAGAAAACAGGGAAU	chr2:42522245-42522492(+)$1	247	121	147	23.6567
UAUUUUUCACGAAUCAGCUACGAAAG	chr16:9012850-9013095(-)$1	245	182	208	26.1274
ACCUACUUACAUCCUGAACAUCAAGA	chr2:21260736-21260988(-)$1	252	68	94	24.3371
UUACAAAGAAAAAUGGAAAAACUUUG	chr13:107196265-107196584(-)$1	319	260	286	26.2479
UGAAGCACUUGAAAGAUAUUAAAGUG	chr12:76448727-76448970(-)$1	243	119	145	21.0202
CCCUUCGGUUUCCUUCUCCCUUCUGC	chr19:13051458-13051663(+)$1	205	71	97	24.6964
CAAGAAGGAUAAUCGAGGAAACCUGC	chr2:216292822-216293041(-)$1	219	35	61	25.0146
UGGUCAUCUUGCACAACACCUGAUGA	chr16:18850918-18851167(-)$1	249	103	129	23.9772
AUUACACCUAUUUGAUUCUGCGGGUA	chr2:21252669-21252874(-)$1	205	82	108	26.6101
UUUACUAGAAAACCAUAUAGAUUUGG	chr5:137893533-137893777(-)$1	244	17	43	22.7651
AAUUUUUGUUUUAAAAUUUCACAUGG	chr1:67885588-67885814(-)$1	226	181	207	23.8671
UGAGGGGCGCAUUGUCAAUAAAGCAC	chr9:127620079-127620365(-)$1	286	166	192	24.5547
AUUACACCUAUUUGAUUCUGCGGGUA	chr2:21252674-21252882(-)$1	208	90	116	26.6101
UCUUCAGCCGCCUCGACUCAAGUUUG	chr10:12071255-12071575(-)$1	320	165	191	22.7016
CAGCGAGCCAAAGAUUCCAAAGGUAA	chrX:128614990-128615256(-)$1	266	183	209	24.0203
UCAUUGGCUCUUUUUCUUGCUUGUCC	chrX:18936728-18937049(-)$1	321	43	69	23.6873
UUCAUAGUAUUACUUUAUAAAUUGUG	chr2:188352962-188353189(-)$1	227	28	54	24.4851
AAUCGGUCGAAUUGAAAAUGGGGAAA	chr8:141745248-141745610(-)$1	362	123	149	23.8427
CCUGGUGCCUCAAAAUGUAUUGGCCC	chr20:61538582-61538815(-)$1	233	116	142	24.7351
CUUGUGCAUUUGUGUCUGUUAUUGUA	chr5:179149896-179150120(+)$1	224	138	164	22.4623
UCCCAAGCCUaagaagaagaagcaca	chr19:2111665-2111926(-)$1	261	104	130	26.0379
CGCCCGACCGCAUCGACAUCUUCGGG	chr13:107220003-107220277(-)$1	274	242	268	24.5372
GAUUCCUUAUCAAAAGCCAUUAGGGA	chr10:101591269-101591507(+)$1	238	40	66	22.9061
UGCUAAGAAAAGGAAGAAGAAGUCUU	chr2:55461877-55462138(+)$1	261	127	153	23.6801
ACUACCACAGCUCCUUCUCUGAGUGG	chr3:41265916-41266172(+)$1	256	204	230	24.4177
UUGACUGAUCAUCAUGGCUUCAGUUU	chr2:62934099-62934469(+)$1	370	214	240	21.9239
AGGGAGGGAGGGUCAGGUGCGUUCCC	chr11:720955-721226(+)$1	271	49	75	22.0783
UCUGUUACUAAUUAUAGCAAAUGUCA	chr17:62500021-62500306(-)$1	285	55	81	24.7978
GGGCAAUGAAAUAGACUUACACACUG	chr3:148895602-148895849(-)$1	247	165	191	25.8954

#DB
.(((((((...........)))))))	chr10:79795009-79795222(+)$1	1	27	53	22.6251
)(((((((.............)))))	chr3:142761857-142762211(+)$1	1	270	296	26.2352
)(((((((............))))))	chr16:18863287-18863541(-)$1	1	148	174	23.2194
.(((..(((............)))..	chr10:101595752-101596002(+)$1	1	196	222	24.0894
.(..(.((...........)).)..)	chr16:89350150-89350388(-)$1	1	86	112	21.3423
.((((.((.............)).))	chr6:7583110-7583384(+)$1	1	42	68	24.1191
(((((((................)))	chr11:68205912-68206157(+)$1	1	66	92	21.1735
(((..(((..............))).	chr3:148916216-148916465(-)$1	1	62	88	24.0171
(..((((((............)))))	chr9:127998776-127999060(-)$1	1	234	260	23.8633
(((((..(.............)..))	chr6:4060740-4060983(+)$1	1	90	116	25.9064
(((((((((............)))))	chr17:27004993-27005247(+)$1	1	46	72	24.6787
..((((((............))))))	chr10:101591750-101591954(+)$1	1	107	133	24.0740
(((((((((............)))))	chr5:174935976-174936294(+)$1	1	93	119	24.6787
))((((((.............)))))	chr12:26834739-26835016(-)$1	1	126	152	25.4467
.(((((((.............)))).	chr11:57574317-57574554(+)$1	1	84	110	23.9880
((((((((.............)))))	chr6:56401476-56401836(-)$1	1	57	83	25.2561
(((.(..((...........))..))	chr12:56999574-56999859(-)$1	1	193	219	22.1648
((.((((((...........))))))	chr11:129998925-129999172(+)$1	1	209	235	22.3327
(((((.((.............)).))	chr2:242289385-242289619(+)$1	1	19	45	25.6925
(.....((..............))..	chr4:3520496-3520729(-)$1	1	135	161	21.0141
((((((((.............)))))	chr12:104340540-104340754(+)$1	1	53	79	23.3387
.((((.((............)).)))	chr11:6549681-6550016(+)$1	1	60	86	22.9977
(.((((((............))))))	chr12:9256867-9257078(-)$1	1	82	108	23.9705
)(((((((.............)))))	chr4:151836659-151836912(-)$1	1	147	173	26.1202
..((((((.............)))))	chr6:144814469-144814692(+)$1	1	32	58	23.7606
(.((((((............))))))	chr3:172070573-172070842(+)$1	1	93	119	23.7824
((((.(((.............)))))	chr20:45874802-45875173(-)$1	1	277	303	25.4289
(((((.((.............)))))	chr7:72891432-72891693(-)$1	1	32	58	25.8255
(((((.((............))))))	chr2:42522245-42522492(+)$1	1	121	147	23.6567
((((((((.............)))))	chr16:9012850-9013095(-)$1	1	182	208	26.1274
.(((.(((..............))))	chr2:21260736-21260988(-)$1	1	68	94	24.3371
.(((((((.............)))))	chr13:107196265-107196584(-)$1	1	260	286	26.2479
(((..(((((...........)))))	chr12:76448727-76448970(-)$1	1	119	145	21.0202
((((.(((..............))).	chr19:13051458-13051663(+)$1	1	71	97	24.6964
((....((.............)))))	chr2:216292822-216293041(-)$1	1	35	61	25.0146
.))(((((.............)))))	chr16:18850918-18851167(-)$1	1	103	129	23.9772
(((((.((.............)))))	chr2:21252669-21252874(-)$1	1	82	108	26.6101
(((.(((((............)))))	chr5:137893533-137893777(-)$1	1	17	43	22.7651
(((((.(((...........))).))	chr1:67885588-67885814(-)$1	1	181	207	23.8671
.(..(.((..............)).)	chr9:127620079-127620365(-)$1	1	166	192	24.5547
(((((.((.............)))))	chr2:21252674-21252882(-)$1	1	90	116	26.6101
(((((((.(............).)))	chr10:12071255-12071575(-)$1	1	165	191	22.7016
(((...(((............)))..	chrX:128614990-128615256(-)$1	1	183	209	24.0203
((((((((..............).))	chrX:18936728-18937049(-)$1	1	43	69	23.6873
.(((((((............))))))	chr2:188352962-188353189(-)$1	1	28	54	24.4851
((((..((..............))..	chr8:141745248-141745610(-)$1	1	123	149	23.8427
(((((.(((............))).)	chr20:61538582-61538815(-)$1	1	116	142	24.7351
((..((((..............))))	chr5:179149896-179150120(+)$1	1	138	164	22.4623
(((...((.............))...	chr19:2111665-2111926(-)$1	1	104	130	26.0379
(((((((..............)))))	chr13:107220003-107220277(-)$1	1	242	268	24.5372
(((((((((...........))))))	chr10:101591269-101591507(+)$1	1	40	66	22.9061
((.(((((..............))))	chr2:55461877-55462138(+)$1	1	127	153	23.6801
..((((((..............))))	chr3:41265916-41266172(+)$1	1	204	230	24.4177
((((((((...........)))))).	chr2:62934099-62934469(+)$1	1	214	240	21.9239
.(((((.(...........).)))))	chr11:720955-721226(+)$1	1	49	75	22.0783
(((((.((..............)).)	chr17:62500021-62500306(-)$1	1	55	81	24.7978
(.(((.((.............)).))	chr3:148895602-148895849(-)$1	1	165	191	25.8954

#PSSM
e : 0.12	c : 0.10	g : 0.10	[ : 0.08	! : 0.08	b : 0.08	= : 0.07	i : 0.07	h : 0.07	f : 0.05	: : 0.03	D : 0.01	% : 0.01	C : 0.01	" : 0.01	] : 0.01	d : 0.01	
g : 0.21	e : 0.12	c : 0.10	= : 0.07	b : 0.07	i : 0.07	a : 0.05	d : 0.05	f : 0.05	! : 0.05	[ : 0.05	h : 0.03	$ : 0.01	C : 0.01	: : 0.01	
f : 0.21	g : 0.19	c : 0.12	e : 0.12	! : 0.07	= : 0.07	i : 0.07	d : 0.03	[ : 0.03	$ : 0.01	# : 0.01	b : 0.01	h : 0.01	
f : 0.22	g : 0.19	e : 0.12	! : 0.08	c : 0.07	= : 0.07	i : 0.07	d : 0.03	[ : 0.03	" : 0.03	$ : 0.01	# : 0.01	h : 0.01	
f : 0.21	g : 0.19	e : 0.12	! : 0.07	d : 0.07	i : 0.07	a : 0.05	= : 0.05	[ : 0.05	" : 0.03	$ : 0.01	# : 0.01	h : 0.01	c : 0.01	
[ : 0.22	f : 0.19	g : 0.12	e : 0.10	! : 0.07	c : 0.07	= : 0.05	d : 0.03	i : 0.03	" : 0.03	$ : 0.01	# : 0.01	h : 0.01	
b : 0.26	f : 0.19	c : 0.14	g : 0.12	e : 0.08	= : 0.05	! : 0.03	d : 0.03	i : 0.03	h : 0.01	[ : 0.01	
b : 0.28	f : 0.19	c : 0.14	g : 0.10	e : 0.07	a : 0.05	= : 0.03	d : 0.03	i : 0.03	y : 0.01	[ : 0.01	w : 0.01	
v : 0.35	w : 0.21	u : 0.12	t : 0.07	c : 0.07	f : 0.03	= : 0.03	e : 0.03	y : 0.01	b : 0.01	a : 0.01	i : 0.01	
v : 0.35	u : 0.26	w : 0.21	t : 0.14	y : 0.01	e : 0.01	
v : 0.35	u : 0.26	w : 0.21	t : 0.15	y : 0.01	
v : 0.35	u : 0.26	w : 0.21	t : 0.15	y : 0.01	
v : 0.35	u : 0.26	w : 0.21	t : 0.15	y : 0.01	
v : 0.35	u : 0.26	w : 0.21	t : 0.15	y : 0.01	
v : 0.35	u : 0.26	w : 0.21	t : 0.15	y : 0.01	
v : 0.35	u : 0.26	w : 0.21	t : 0.15	y : 0.01	
v : 0.35	u : 0.26	w : 0.21	t : 0.15	y : 0.01	
v : 0.35	u : 0.26	w : 0.21	t : 0.15	y : 0.01	
v : 0.35	u : 0.26	w : 0.21	t : 0.15	y : 0.01	
v : 0.35	u : 0.26	w : 0.21	t : 0.08	g : 0.01	b : 0.01	y : 0.01	f : 0.01	a : 0.01	
v : 0.35	w : 0.21	u : 0.14	f : 0.08	b : 0.07	g : 0.05	y : 0.01	t : 0.01	c : 0.01	i : 0.01	] : 0.01	
b : 0.19	w : 0.19	f : 0.17	g : 0.12	c : 0.08	e : 0.07	a : 0.03	= : 0.03	i : 0.03	] : 0.01	y : 0.01	d : 0.01	
b : 0.21	f : 0.19	c : 0.14	g : 0.12	e : 0.10	a : 0.03	2 : 0.03	= : 0.03	d : 0.03	] : 0.03	i : 0.03	y : 0.01	
f : 0.21	g : 0.15	c : 0.12	e : 0.10	] : 0.08	b : 0.07	2 : 0.05	= : 0.05	d : 0.05	i : 0.03	h : 0.03	3 : 0.01	
f : 0.21	g : 0.19	e : 0.15	d : 0.07	c : 0.07	2 : 0.05	= : 0.05	] : 0.05	i : 0.03	h : 0.03	a : 0.01	5 : 0.01	4 : 0.01	3 : 0.01	
g : 0.19	f : 0.19	e : 0.15	2 : 0.07	i : 0.07	d : 0.05	= : 0.05	c : 0.05	a : 0.03	h : 0.03	3 : 0.03	5 : 0.01	] : 0.01	4 : 0.01	

#score	1372.838082798919
#seq	57
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_CDS_m2_run1.txt

#BEAR
eeeeeooooooeeeee	chr8:30669827-30670092(-)$1	265	131	147	7.9296
[ddddnnnnnddddcc	chr1:201798183-201798499(+)$1	316	258	274	9.3123
eeeeeooooooeeeee	chr11:18425139-18425353(+)$1	214	186	202	7.9296
h[cccnnnnnccc]hh	chr16:18812646-18812968(-)$1	322	82	98	8.6033
fffffnnnnnffffff	chr7:99686488-99686804(+)$1	316	232	248	9.1311
[ddddnnnnndddd44	chr16:29801967-29802234(+)$1	267	190	206	9.3524
eeeeennnnneeeee:	chr22:21348451-21348719(+)$1	268	36	52	10.4258
eeeeeooooooeeeee	chr18:43678037-43678293(-)$1	256	213	229	7.9296
eeeeennnnneeeee2	chr2:85769648-85769932(+)$1	284	60	76	11.2582
ffffannnnna]ffff	chr22:38902133-38902411(-)$1	278	214	230	9.2001
eeeeeooooooeeeee	chr5:176981013-176981268(-)$1	255	117	133	7.9296
eeeeennnnneeeeec	chr1:894494-894738(-)$1	244	161	177	11.2847
g[cccnnnnncccggg	chr11:85779704-85780015(-)$1	311	125	141	9.2560
eeeeennnnneeeeeb	chr7:54825137-54825389(-)$1	252	145	161	11.0534
ddcccnnnnnccc333	chr2:98262433-98262715(+)$1	282	97	113	9.2108
eeeeeooooooeeeee	chr14:96968695-96968950(+)$1	255	125	141	7.9296
eeeeennnnneeeee2	chr11:16760121-16760443(+)$1	322	39	55	11.2582
ee[bbnnnnnbb]eee	chr9:100756810-100757024(+)$1	214	176	192	8.9944
fffffnnnnnffffff	chr20:35724171-35724500(-)$1	329	200	216	9.1311
eeeeennnnneeeee3	chr15:57211972-57212287(+)$1	315	12	28	11.4322
cddddnnnnndddd]c	chr17:79894942-79895209(-)$1	267	2	18	9.2635
=====nnnnn======	chr16:75018806-75019087(-)$1	281	22	38	9.3494
[ddddnnnnnddddcc	chr16:28962291-28962545(+)$1	254	168	184	9.3123
fffffnnnnnffffff	chr19:5719788-5720057(-)$1	269	149	165	9.1311
eeeeooooooeeeee3	chr19:54704937-54705162(+)$1	225	199	215	7.9486
eeeeooooooeeeee]	chr6:143486107-143486352(+)$1	245	13	29	7.8696
eeeeennnnneeeeec	chr3:183602431-183602779(-)$1	348	189	205	11.2847
ddddannnnna]dddd	chr17:41154589-41154822(+)$1	233	175	191	9.1668
eeeeennnnneeeee]	chr12:56435825-56436138(+)$1	313	245	261	11.3532
dd!!annnnna]dddd	chr20:49307563-49307864(-)$1	301	154	170	9.0945
fffffnnnnnffffff	chr12:56122010-56122239(-)$1	229	206	222	9.1311
fffffnnnnnffffff	chr2:170440775-170441069(+)$1	294	2	18	9.1311
eeeeennnnneeeeeI	chr19:49990766-49991003(+)$1	237	140	156	9.9683
dd!!annnnna22ddd	chr19:50180394-50180674(+)$1	280	180	196	8.4556
eeeeennnnneeeee:	chr17:80443356-80443630(+)$1	274	200	216	10.4258
eeeeeooooooeeeee	chr7:128491192-128491450(+)$1	258	79	95	7.9296
eeeeennnnneeeeed	chr1:12089620-12089925(+)$1	305	7	23	11.1773
eeeeooooooeeeee4	chr12:49524976-49525276(-)$1	300	276	292	7.8488
gggggnnnnngggggg	chr11:67810665-67810942(+)$1	277	28	44	9.3310
eeeeennnnneeeee2	chr9:101867328-101867596(+)$1	268	135	151	11.2582
ddcccnnnnnccc]dd	chr1:155904033-155904290(-)$1	257	129	145	9.0305
fffffnnnnnffffff	chr19:5719967-5720250(-)$1	283	53	69	9.1311
b[cccnnnnnccc]bb	chr19:1104627-1104870(+)$1	243	108	124	8.2885
!!cccnnnnnccc]bb	chr17:73839682-73839943(-)$1	261	59	75	8.6025
ee[bbnnnnnbbeeee	chr8:37756810-37757066(-)$1	256	46	62	9.2947
gggggnnnnngggggg	chr11:46822726-46822974(-)$1	248	136	152	9.3310
)ddddnnnnndddd22	chr4:129208779-129209059(-)$1	280	228	244	8.5310
fffffnnnnnffffff	chr4:39459939-39460178(-)$1	239	117	133	9.1311
eddddnnnnndddd22	chr3:186501278-186501522(+)$1	244	141	157	9.3203
iddddnnnnndddd]i	chrX:153060016-153060294(+)$1	278	233	249	9.3330
eeeeennnnneeeeee	chr1:153930840-153931111(-)$1	271	57	73	11.2702

#otherMatches

#Seq PSSM
GAUCCGCAUCGGGAUC	chr8:30669827-30670092(-)$1	265	131	147	7.9296
AGUACAGGAGGUGCGG	chr1:201798183-201798499(+)$1	316	258	274	9.3123
GUGGAAAGAGGUUCAC	chr11:18425139-18425353(+)$1	214	186	202	7.9296
GCGGGGCGUUCCCUCG	chr16:18812646-18812968(-)$1	322	82	98	8.6033
ACCUCCUUCAGGGGUU	chr7:99686488-99686804(+)$1	316	232	248	9.1311
AGCCCGGCCUGGGCAA	chr16:29801967-29802234(+)$1	267	190	206	9.3524
GGCCGAGGCCCGGCCC	chr22:21348451-21348719(+)$1	268	36	52	10.4258
GCGCCGGCUCGGGCGC	chr18:43678037-43678293(-)$1	256	213	229	7.9296
CGCAAAAUCAUUGUGG	chr2:85769648-85769932(+)$1	284	60	76	11.2582
UCUCCGACGAGAGAGG	chr22:38902133-38902411(-)$1	278	214	230	9.2001
GGCUGGGGUAGCAGCC	chr5:176981013-176981268(-)$1	255	117	133	7.9296
GGGCCGAUUUGGCCUC	chr1:894494-894738(-)$1	244	161	177	11.2847
CUCCGGCUCUUGGGGG	chr11:85779704-85780015(-)$1	311	125	141	9.2560
AGUUUGUAAAGGACUC	chr7:54825137-54825389(-)$1	252	145	161	11.0534
GCUGCUAGUCGCGGAC	chr2:98262433-98262715(+)$1	282	97	113	9.2108
GGGCUGAGGCAGGCCC	chr14:96968695-96968950(+)$1	255	125	141	7.9296
GCGGCGAGGGGCCGCA	chr11:16760121-16760443(+)$1	322	39	55	11.2582
CUUAGAGUUCCUCAGU	chr9:100756810-100757024(+)$1	214	176	192	8.9944
CGGCGGUGGUCGCCGC	chr20:35724171-35724500(-)$1	329	200	216	9.1311
GGCGCCCCCAGCGCUC	chr15:57211972-57212287(+)$1	315	12	28	11.4322
CCCGGAUUCGCUGGCG	chr17:79894942-79895209(-)$1	267	2	18	9.2635
GGUCAACCAAUGGCUU	chr16:75018806-75019087(-)$1	281	22	38	9.3494
UGGACGUAGUGUCUGU	chr16:28962291-28962545(+)$1	254	168	184	9.3123
UCUCGGGGGGCGAGGA	chr19:5719788-5720057(-)$1	269	149	165	9.1311
CUGAAGCUGAUCGGUG	chr19:54704937-54705162(+)$1	225	199	215	7.9486
CCAAAUUCUGUUGGAU	chr6:143486107-143486352(+)$1	245	13	29	7.8696
GGCGUGGGGUGCGUCG	chr3:183602431-183602779(-)$1	348	189	205	11.2847
GGCCCGACGGGAGGCC	chr17:41154589-41154822(+)$1	233	175	191	9.1668
GGGUCGGCGGGAUUUG	chr12:56435825-56436138(+)$1	313	245	261	11.3532
GCAAGGAGGGCGGCGG	chr20:49307563-49307864(-)$1	301	154	170	9.0945
GCGCCGGCAGGGUGCG	chr12:56122010-56122239(-)$1	229	206	222	9.1311
CCUAGAAGUCCUAGGA	chr2:170440775-170441069(+)$1	294	2	18	9.1311
GGCUCCGCGCGGGCCG	chr19:49990766-49991003(+)$1	237	140	156	9.9683
UGAGCGCUUGGAGCGC	chr19:50180394-50180674(+)$1	280	180	196	8.4556
UCUGUCUCCCACGGGU	chr17:80443356-80443630(+)$1	274	200	216	10.4258
CUCUGUAUCCCCAGGG	chr7:128491192-128491450(+)$1	258	79	95	7.9296
GGAGGAUGUCCCUCCC	chr1:12089620-12089925(+)$1	305	7	23	11.1773
AGCCGGGAAGGGCUGG	chr12:49524976-49525276(-)$1	300	276	292	7.8488
GAGGCCUCCUGCCUUC	chr11:67810665-67810942(+)$1	277	28	44	9.3310
gcCACAGGCGGUGGCG	chr9:101867328-101867596(+)$1	268	135	151	11.2582
UCCGCGGGGAGCGCGA	chr1:155904033-155904290(-)$1	257	129	145	9.0305
UUCGCGGCGAGCGGAA	chr19:5719967-5720250(-)$1	283	53	69	9.1311
GGGCCGCGCGGGCGCA	chr19:1104627-1104870(+)$1	243	108	124	8.2885
CACUGAUAAGCAGAGC	chr17:73839682-73839943(-)$1	261	59	75	8.6025
GGGCCGUGGAGGCCGC	chr8:37756810-37757066(-)$1	256	46	62	9.2947
CCAAUGUCAUGUUGGU	chr11:46822726-46822974(-)$1	248	136	152	9.3310
ggcugggcggcggcgg	chr4:129208779-129209059(-)$1	280	228	244	8.5310
GAAUGAAGACUAUUCU	chr4:39459939-39460178(-)$1	239	117	133	9.1311
UUAUAACAGGUAUGCA	chr3:186501278-186501522(+)$1	244	141	157	9.3203
CCCACGGCAGGUGGUG	chrX:153060016-153060294(+)$1	278	233	249	9.3330
CGGCUGGAGGAGCCGG	chr1:153930840-153931111(-)$1	271	57	73	11.2702

#DB
(((((......)))))	chr8:30669827-30670092(-)$1	1	131	147	7.9296
.((((.....))))))	chr1:201798183-201798499(+)$1	1	258	274	9.3123
(((((......)))))	chr11:18425139-18425353(+)$1	1	186	202	7.9296
(.(((.....))).))	chr16:18812646-18812968(-)$1	1	82	98	8.6033
(((((.....))))))	chr7:99686488-99686804(+)$1	1	232	248	9.1311
.((((.....))))..	chr16:29801967-29802234(+)$1	1	190	206	9.3524
(((((.....))))).	chr22:21348451-21348719(+)$1	1	36	52	10.4258
(((((......)))))	chr18:43678037-43678293(-)$1	1	213	229	7.9296
(((((.....))))).	chr2:85769648-85769932(+)$1	1	60	76	11.2582
(((((.....).))))	chr22:38902133-38902411(-)$1	1	214	230	9.2001
(((((......)))))	chr5:176981013-176981268(-)$1	1	117	133	7.9296
(((((.....)))))(	chr1:894494-894738(-)$1	1	161	177	11.2847
(.(((.....))))))	chr11:85779704-85780015(-)$1	1	125	141	9.2560
(((((.....))))))	chr7:54825137-54825389(-)$1	1	145	161	11.0534
(((((.....)))...	chr2:98262433-98262715(+)$1	1	97	113	9.2108
(((((......)))))	chr14:96968695-96968950(+)$1	1	125	141	7.9296
(((((.....))))).	chr11:16760121-16760443(+)$1	1	39	55	11.2582
((.((.....)).)))	chr9:100756810-100757024(+)$1	1	176	192	8.9944
(((((.....))))))	chr20:35724171-35724500(-)$1	1	200	216	9.1311
(((((.....))))).	chr15:57211972-57212287(+)$1	1	12	28	11.4322
(((((.....)))).)	chr17:79894942-79895209(-)$1	1	2	18	9.2635
(((((.....))))))	chr16:75018806-75019087(-)$1	1	22	38	9.3494
.((((.....))))))	chr16:28962291-28962545(+)$1	1	168	184	9.3123
(((((.....))))))	chr19:5719788-5720057(-)$1	1	149	165	9.1311
((((......))))).	chr19:54704937-54705162(+)$1	1	199	215	7.9486
((((......))))).	chr6:143486107-143486352(+)$1	1	13	29	7.8696
(((((.....))))))	chr3:183602431-183602779(-)$1	1	189	205	11.2847
(((((.....).))))	chr17:41154589-41154822(+)$1	1	175	191	9.1668
(((((.....))))).	chr12:56435825-56436138(+)$1	1	245	261	11.3532
((..(.....).))))	chr20:49307563-49307864(-)$1	1	154	170	9.0945
(((((.....))))))	chr12:56122010-56122239(-)$1	1	206	222	9.1311
(((((.....))))))	chr2:170440775-170441069(+)$1	1	2	18	9.1311
(((((.....))))))	chr19:49990766-49991003(+)$1	1	140	156	9.9683
((..(.....)..)))	chr19:50180394-50180674(+)$1	1	180	196	8.4556
(((((.....))))).	chr17:80443356-80443630(+)$1	1	200	216	10.4258
(((((......)))))	chr7:128491192-128491450(+)$1	1	79	95	7.9296
(((((.....)))))(	chr1:12089620-12089925(+)$1	1	7	23	11.1773
((((......))))).	chr12:49524976-49525276(-)$1	1	276	292	7.8488
(((((.....))))))	chr11:67810665-67810942(+)$1	1	28	44	9.3310
(((((.....))))).	chr9:101867328-101867596(+)$1	1	135	151	11.2582
(((((.....))).))	chr1:155904033-155904290(-)$1	1	129	145	9.0305
(((((.....))))))	chr19:5719967-5720250(-)$1	1	53	69	9.1311
(.(((.....))).))	chr19:1104627-1104870(+)$1	1	108	124	8.2885
..(((.....))).))	chr17:73839682-73839943(-)$1	1	59	75	8.6025
((.((.....))))))	chr8:37756810-37757066(-)$1	1	46	62	9.2947
(((((.....))))))	chr11:46822726-46822974(-)$1	1	136	152	9.3310
.((((.....))))..	chr4:129208779-129209059(-)$1	1	228	244	8.5310
(((((.....))))))	chr4:39459939-39460178(-)$1	1	117	133	9.1311
(((((.....))))..	chr3:186501278-186501522(+)$1	1	141	157	9.3203
(((((.....)))).)	chrX:153060016-153060294(+)$1	1	233	249	9.3330
(((((.....))))))	chr1:153930840-153931111(-)$1	1	57	73	11.2702

#PSSM
e : 0.49	f : 0.15	d : 0.09	[ : 0.05	g : 0.05	h : 0.01	c : 0.01	= : 0.01	b : 0.01	! : 0.01	) : 0.01	i : 0.01	
e : 0.47	d : 0.23	f : 0.15	[ : 0.05	g : 0.03	= : 0.01	! : 0.01	
e : 0.43	d : 0.15	f : 0.15	c : 0.11	[ : 0.03	! : 0.03	g : 0.03	= : 0.01	
e : 0.43	d : 0.15	f : 0.15	c : 0.11	b : 0.03	! : 0.03	g : 0.03	= : 0.01	
e : 0.37	d : 0.13	f : 0.13	c : 0.11	a : 0.07	o : 0.05	b : 0.03	g : 0.03	= : 0.01	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
e : 0.31	d : 0.13	f : 0.13	o : 0.11	c : 0.11	a : 0.07	b : 0.03	g : 0.03	= : 0.01	
e : 0.43	d : 0.13	f : 0.13	c : 0.11	] : 0.05	b : 0.03	g : 0.03	= : 0.01	2 : 0.01	
e : 0.45	d : 0.17	f : 0.15	c : 0.11	g : 0.03	] : 0.01	= : 0.01	2 : 0.01	
e : 0.47	d : 0.19	f : 0.15	] : 0.07	g : 0.05	3 : 0.01	= : 0.01	
e : 0.47	f : 0.15	d : 0.07	g : 0.05	c : 0.03	] : 0.03	b : 0.03	2 : 0.03	h : 0.01	4 : 0.01	3 : 0.01	= : 0.01	
e : 0.17	f : 0.15	c : 0.09	2 : 0.09	d : 0.09	g : 0.05	b : 0.05	3 : 0.05	4 : 0.03	: : 0.03	] : 0.03	h : 0.01	= : 0.01	I : 0.01	i : 0.01	

#score	478.24902517658063
#seq	51
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_UTR_m1_run2.txt

#BEAR
[ccc[dddd[cccmmmmccc]dddd]cccdddd:	chr11:75111433-75111678(+)$1	245	152	186	16.1090
cc[ccc[bb!!ccclllccc22bb]ccc]ccc:b	chr11:122929940-122930172(-)$1	232	75	109	21.0610
cc[ccc[bb!!ccclllccc22bb]ccc]ccc:b	chr11:122929972-122930184(-)$1	212	87	121	21.0610
dddd[dddd!!ccclllccc22dddd]dddd:::	chr11:122929515-122929766(-)$1	251	166	200	18.6292
==========[ccclllccc333===========	chr11:75111331-75111633(+)$1	302	64	98	18.0758
dddd!!ddddcccmmmmccc4444dddd]dddd2	chr7:111928862-111929109(+)$1	247	36	70	16.7072

#otherMatches

#Seq PSSM
GCUGCACUCCUGUUGGAACAAGGGUUUGGAACCA	chr11:75111433-75111678(+)$1	245	152	186	16.1090
uuuccaccaaaagcuuggcuaaugauggcaacac	chr11:122929940-122930172(-)$1	232	75	109	21.0610
uuuccaccaaaagcuuggcuaaugauggcaacac	chr11:122929972-122930184(-)$1	212	87	121	21.0610
GGACCCUAGCACUGUCACAGACCUGGAGUCCAUU	chr11:122929515-122929766(-)$1	251	166	200	18.6292
GAGCAGUUUCUUGUUUUGCAUGUGGAACUGUUUU	chr11:75111331-75111633(+)$1	302	64	98	18.0758
cuccagacaagcucucaaguccauuuguaggaga	chr7:111928862-111929109(+)$1	247	36	70	16.7072

#DB
.(((.((((.(((....))).)))).))))))).	chr11:75111433-75111678(+)$1	1	152	186	16.1090
((.(((.((..(((...)))..)).))).))).(	chr11:122929940-122930172(-)$1	1	75	109	21.0610
((.(((.((..(((...)))..)).))).))).(	chr11:122929972-122930184(-)$1	1	87	121	21.0610
((((.((((..(((...)))..)))).))))...	chr11:122929515-122929766(-)$1	1	166	200	18.6292
((((((((((.(((...)))...)))))))))))	chr11:75111331-75111633(+)$1	1	64	98	18.0758
((((..(((((((....)))....)))).)))).	chr7:111928862-111929109(+)$1	1	36	70	16.7072

#PSSM
c : 0.33	d : 0.33	[ : 0.16	= : 0.16	
c : 0.50	d : 0.33	= : 0.16	
[ : 0.33	d : 0.33	c : 0.16	= : 0.16	
c : 0.50	d : 0.33	= : 0.16	
[ : 0.33	c : 0.33	= : 0.16	! : 0.16	
d : 0.33	c : 0.33	= : 0.16	! : 0.16	
d : 0.50	[ : 0.33	= : 0.16	
d : 0.50	b : 0.33	= : 0.16	
d : 0.50	b : 0.33	= : 0.16	
! : 0.50	[ : 0.16	= : 0.16	d : 0.16	
! : 0.50	c : 0.33	[ : 0.16	
c : 0.99	
c : 0.99	
c : 0.66	m : 0.33	
l : 0.66	m : 0.33	
l : 0.66	m : 0.33	
l : 0.66	m : 0.33	
c : 0.99	
c : 0.99	
c : 0.99	
2 : 0.50	] : 0.16	3 : 0.16	4 : 0.16	
2 : 0.50	d : 0.16	3 : 0.16	4 : 0.16	
d : 0.33	b : 0.33	3 : 0.16	4 : 0.16	
d : 0.33	b : 0.33	= : 0.16	4 : 0.16	
d : 0.50	] : 0.33	= : 0.16	
c : 0.33	d : 0.33	] : 0.16	= : 0.16	
c : 0.50	] : 0.16	= : 0.16	d : 0.16	
c : 0.50	d : 0.33	= : 0.16	
] : 0.50	c : 0.16	d : 0.16	= : 0.16	
d : 0.50	c : 0.33	= : 0.16	
d : 0.50	c : 0.33	= : 0.16	
d : 0.33	c : 0.33	: : 0.16	= : 0.16	
: : 0.50	d : 0.33	= : 0.16	
: : 0.33	b : 0.33	= : 0.16	2 : 0.16	

#score	111.64353716536661
#seq	6
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_CDS_m3_run2.txt

#BEAR
d!!bb!!ddddmmmmdddd22bbdd	chr14:24761347-24761623(-)$1	276	156	181	11.2504
"""ccc!!cccmmmmccc]ccc333	chr15:63352983-63353264(+)$1	281	92	117	11.9415
d[iiiiiiiiimmmmiiiiiiiii]	chr9:117012808-117013045(+)$1	237	75	100	9.7547
cc!!a!!ddddnnnnndddd]a22c	chr9:117044494-117044706(+)$1	212	182	207	8.8008
"a[cccddddoooooodddd]ccc]	chr17:45915153-45915434(-)$1	281	149	174	9.0558
gggggg[ddddllldddd]gggggg	chr21:47556801-47557025(-)$1	224	185	210	10.0969
d####bbddddmmmmdddd]bb333	chr19:5663921-5664192(+)$1	271	223	248	11.0261
eeee[a[ddddlllddddaeeeeec	chr17:17739925-17740221(-)$1	296	166	191	8.9521
eeccc!!ddddmmmmdddd]ccc:a	chr16:74943297-74943534(-)$1	237	115	140	11.4546
!ccc[ccc[bbmmmmbb]cccccc2	chr11:429519-429752(-)$1	233	99	124	9.0053
b!!gggggggammmma]ggggggg]	chr7:1522114-1522428(-)$1	314	117	142	9.7762
eee####ddddlllddddeeeee]d	chr2:232576505-232576750(+)$1	245	24	49	9.1107
ccccc"""cccmmmmccc333ccc]	chr17:78931339-78931624(+)$1	285	95	120	12.1448
:ccc[a[ddddmmmmdddda]ccc:	chr14:105241889-105242251(-)$1	362	114	139	10.5953
[eeeee[ddddmmmmdddd22eeee	chr12:133360559-133360929(-)$1	370	23	48	11.2219
ffffff[ddddllldddd22fffff	chr9:117014776-117015026(+)$1	250	105	130	9.3616
bb[gggggggammmma]ggggggg]	chr14:104145729-104145999(+)$1	270	184	209	9.3900
ggggg!!ddddnnnnndddd]gggg	chr6:33272753-33273007(-)$1	254	41	66	8.8916
(ffffffddddmmmmdddd22ffff	chr17:53398020-53398294(+)$1	274	123	148	10.5922
[eeeee!!cccmmmmccc4444eee	chr17:61890556-61890818(+)$1	262	76	101	10.5182
fffff[ccc[ammmma]ccc]ffff	chr2:85769617-85769900(+)$1	283	231	256	9.5364
!!a[cccddddmmmmdddd]ccc]a	chr11:67771312-67771671(-)$1	359	300	325	12.2048
c[ccc!!ddddmmmmdddd4444cc	chr9:117002401-117002642(+)$1	241	82	107	12.7819
ff[ccc!!cccmmmmccc]cccfff	chr16:58549583-58549933(+)$1	350	256	281	11.2205
##ccc[addddmmmmdddd333a]c	chr16:71487069-71487345(-)$1	276	107	132	12.5996
ee!!ddddcccmmmmccc]dddd44	chr1:178063602-178063923(+)$1	321	171	196	9.6393
[ffffffddddmmmmdddd]fffff	chr20:42086901-42087144(+)$1	243	106	131	11.0945
::ccc!!ddddmmmmdddd22ccc:	chr17:46051283-46051497(+)$1	214	40	65	9.9699
dd####eeeeemmmmeeeee4444d	chr14:21966347-21966615(-)$1	268	174	199	9.5080
ffffff!!cccmmmmccc4444fff	chr19:12822103-12822380(-)$1	277	247	272	10.8705
gggggg!!cccmmmmcccggggggg	chr2:97296939-97297238(-)$1	299	154	179	10.9569
eeee!!a[cccmmmmccca22eeee	chr20:32258400-32258641(-)$1	241	48	73	10.2037
ffffff[ddddmmmmdddd]fffff	chr9:117027245-117027482(+)$1	237	116	141	11.4724
ccc[a[eeeeemmmmeeeee]accc	chr12:53454090-53454353(+)$1	263	95	120	9.9445
:==========mmmm==========	chr12:132198644-132198904(+)$1	260	181	206	9.4697
ggggg"""cccmmmmccc333gggg	chr1:2160049-2160337(+)$1	288	25	50	11.9138
c"""a[eeeeemmmmeeeee]accc	chr1:27675797-27676144(+)$1	347	98	123	10.1635
gggg!!eeeeemmmmeeeeeggggg	chr14:21821545-21821820(-)$1	275	225	250	9.7865
bb[ccc[ddddllldddd]ccc]bb	chr2:70057115-70057385(+)$1	270	208	233	9.4680
ddddddd[cccmmmmccc333dddd	chr20:62374160-62374396(+)$1	236	184	209	9.3177
ccc####ddddmmmmddddccc]bb	chr16:31049334-31049596(+)$1	262	90	115	11.5989
####bb[ddddmmmmdddd]bb22g	chr21:46912519-46912727(+)$1	208	25	50	11.0400
cc[ccc[ddddmmmmddddccc]cc	chr20:61460024-61460255(+)$1	231	131	156	12.3630
ccc[gggggggmmmmggggggg]cc	chr14:21464605-21464878(+)$1	273	111	136	9.6582
$$$ccceeeeemmmmeeeee]ccc2	chr11:70505829-70506133(-)$1	304	39	64	9.4416
ggggggg!!bbmmmmbb333ggggg	chr2:232326150-232326372(-)$1	222	23	48	9.7546
hh[ccc[ddddmmmmdddd]ccc99	chr19:10782014-10782236(+)$1	222	172	197	10.9096
dd!!ccc!!bbmmmmbb22ccc444	chr2:113300042-113300392(+)$1	350	302	327	9.0734
!!dddd[ddddmmmmdddd]dddd2	chr16:50583232-50583497(+)$1	265	188	213	10.7867
!!ccc!!ddddmmmmdddd22cccd	chr1:226053469-226053735(-)$1	266	9	34	12.8237
ffffff[ddddllldddd]ffffff	chr16:16244406-16244667(-)$1	261	43	68	9.2307
d[a!!a!!ccclllccc]a22addd	chr16:28962379-28962640(+)$1	261	235	260	8.8412
eeeccc[a[bbmmmmbba]ccc333	chr17:30687623-30687900(+)$1	277	36	61	9.7308
fffff####bbmmmmbb4444ffff	chr20:3202377-3202609(+)$1	232	157	182	9.3506
####cccddddllldddd]ccc444	chr17:79652590-79652864(+)$1	274	213	238	10.1024
[ffffff[cccmmmmccc]ffffff	chr12:6879453-6879689(+)$1	236	153	178	9.8121
bb$$$$$ddddmmmmddddbb22cc	chr3:32927398-32927685(+)$1	287	161	186	9.6409
eeeee"""cccmmmmccc333eeee	chr17:56082180-56082402(-)$1	222	132	157	10.8391

#otherMatches

#Seq PSSM
CCGGGGAUUGUGCAGACAGAACUGC	chr14:24761347-24761623(-)$1	276	156	181	11.2504
UAAGCUGGUCAUCAUUGAGAGCGAC	chr15:63352983-63353264(+)$1	281	92	117	11.9415
GUGUCUCAUAGGGAUUUAUGGGAUU	chr9:117012808-117013045(+)$1	237	75	100	9.7547
CCUCCCUGGACCCUCCGUCCUGUUG	chr9:117044494-117044706(+)$1	212	182	207	8.8008
GUGGGCCCCACCCCUCUGGGAGCUG	chr17:45915153-45915434(-)$1	281	149	174	9.0558
GCUGUGACCUCGGUGGGGACACAGC	chr21:47556801-47557025(-)$1	224	185	210	10.0969
CGCUACCCCGACCACUCGGUGGACA	chr19:5663921-5664192(+)$1	271	223	248	11.0261
UGACCGACAUCGAAGGUGCGUCAGG	chr17:17739925-17740221(-)$1	296	166	191	8.9521
GGGCCAGGUUCUGCGGAGCAGGUGG	chr16:74943297-74943534(-)$1	237	115	140	11.4546
GCCACGGUGUUCCUGGAGAUCUGGA	chr11:429519-429752(-)$1	233	99	124	9.0053
AUCUGGUUUCCGGAGGAGAAGCCAC	chr7:1522114-1522428(-)$1	314	117	142	9.7762
GCAUCAGGAGCAACGCUCUGUCCAG	chr2:232576505-232576750(+)$1	245	24	49	9.1107
GUGGUGGACUGGGAGCAGGAGACCG	chr17:78931339-78931624(+)$1	285	95	120	12.1448
GGGAGGAGUGGACAACCGCCAUCCA	chr14:105241889-105242251(-)$1	362	114	139	10.5953
UCUUGGCCCUUAGGAAAGGAUCCAG	chr12:133360559-133360929(-)$1	370	23	48	11.2219
GGCAUGAUGGGACCCCCAGGCGUGC	chr9:117014776-117015026(+)$1	250	105	130	9.3616
GGGAGGCGCCCCCAAGUGGCGCUUG	chr14:104145729-104145999(+)$1	270	184	209	9.3900
GGCUGAAUGGCCAGAUGCCAGCAGC	chr6:33272753-33273007(-)$1	254	41	66	8.8916
CUCGGCCCUCCGCCAGGAGGUGGCU	chr17:53398020-53398294(+)$1	274	123	148	10.5922
AUGUGGCACGAGACAUUGAUACCCA	chr17:61890556-61890818(+)$1	262	76	101	10.5182
GUGCCGGAGGGUUCUUGUUCAGGUA	chr2:85769617-85769900(+)$1	283	231	256	9.5364
AGGGUccccccggcgggggcggggc	chr11:67771312-67771671(-)$1	359	300	325	12.2048
CUCUGCUUCCCCUCAGGGAUUCCCA	chr9:117002401-117002642(+)$1	241	82	107	12.7819
CCAGCCCUCCUGCUCAGGUGGCGGU	chr16:58549583-58549933(+)$1	350	256	281	11.2205
AACCUGCUGUGAUCUCACAACUGGA	chr16:71487069-71487345(-)$1	276	107	132	12.5996
GGAUCGGAUCCUUCUGGAGUCCGUG	chr1:178063602-178063923(+)$1	321	171	196	9.6393
UUCGUGGAGUUCGAGGACUCCCGCG	chr20:42086901-42087144(+)$1	243	106	131	11.0945
UCCUGGACCUUCUCAAAGGCACAGA	chr17:46051283-46051497(+)$1	214	40	65	9.9699
GUACCCAGAUGGUAUCAUCUCUAAA	chr14:21966347-21966615(-)$1	268	174	199	9.5080
AUGCUCUGUCCGACUGGAAUUUGAG	chr19:12822103-12822380(-)$1	277	247	272	10.8705
UCCUCCACCAGAGGACUGGGAGGAG	chr2:97296939-97297238(-)$1	299	154	179	10.9569
GGGAAGCUCUCAUUUGAGGAAUUCC	chr20:32258400-32258641(-)$1	241	48	73	10.2037
GAGGCCACUUGGGCUCGAGAGGCUU	chr9:117027245-117027482(+)$1	237	116	141	11.4724
CAGAGUCGCUGGAGCCGGUGUCCUG	chr12:53454090-53454353(+)$1	263	95	120	9.9445
aaaauuuuuaaguauuuaaaaauuu	chr12:132198644-132198904(+)$1	260	181	206	9.4697
GCCGUGAGCcggcggcggggggcgg	chr1:2160049-2160337(+)$1	288	25	50	11.9138
CCAAGGAGACCAACAGGUCUGUGCC	chr1:27675797-27676144(+)$1	347	98	123	10.1635
ACACAUUUCAAUAUUUUGAGGUGUU	chr14:21821545-21821820(-)$1	275	225	250	9.7865
CCUGUUGGGCCUGGGGCCGAGCCGG	chr2:70057115-70057385(+)$1	270	208	233	9.4680
UCCGGCUCGUUCAAGAACAUAAGCU	chr20:62374160-62374396(+)$1	236	184	209	9.3177
UCCUUCACAGCCAAUGCUGGGAUGG	chr16:31049334-31049596(+)$1	262	90	115	11.5989
CGGGCAGGCGCGAGGGUGCGUGAUG	chr21:46912519-46912727(+)$1	208	25	50	11.0400
UCGAUGGCCAGAAGGUUGGCAUGGG	chr20:61460024-61460255(+)$1	231	131	156	12.3630
UGGUGAUCCUUGCUCGGGGGUCUCC	chr14:21464605-21464878(+)$1	273	111	136	9.6582
UCCCAGGCUUGUAACCAGGUGCUGC	chr11:70505829-70506133(-)$1	304	39	64	9.4416
CAGCAGCGAUGAAAGCAGCAGCUGC	chr2:232326150-232326372(-)$1	222	23	48	9.7546
CGACAACCUGGCCAUCCAGCUUGCU	chr19:10782014-10782236(+)$1	222	172	197	10.9096
UGAUCCUGACAGGCUUGGUGGGUAA	chr2:113300042-113300392(+)$1	350	302	327	9.0734
ACCCCGACAGCUGCGGUUGGCGGGC	chr16:50583232-50583497(+)$1	265	188	213	10.7867
GAGCAUACCGGCACACUGGCUUGUG	chr1:226053469-226053735(-)$1	266	9	34	12.8237
GCCAGAAACAGCUCCUGUGUCUGGC	chr16:16244406-16244667(-)$1	261	43	68	9.2307
GAGGACAGGCGGCCCGCAGGACCCC	chr16:28962379-28962640(+)$1	261	235	260	8.8412
UGAUGACGACUCUGCAGCCUCAACU	chr17:30687623-30687900(+)$1	277	36	61	9.7308
UGCUUUCAGCCUGAUGGAUAUGAGC	chr20:3202377-3202609(+)$1	232	157	182	9.3506
ACGUAGCUGACCGUGUUAGGCUCUU	chr17:79652590-79652864(+)$1	274	213	238	10.1024
GAGCCCCUGCCAACAGGCUGGGGUU	chr12:6879453-6879689(+)$1	236	153	178	9.8121
GGUAACAGGGAGAGCUCCCCCACCC	chr3:32927398-32927685(+)$1	287	161	186	9.6409
UGCUAUUGUCACAGAUGAAAUUGGC	chr17:56082180-56082402(-)$1	222	132	157	10.8391

#DB
(..((..((((....))))..))))	chr14:24761347-24761623(-)$1	1	156	181	11.2504
...(((..(((....))).)))...	chr15:63352983-63353264(+)$1	1	92	117	11.9415
(.(((((((((....))))))))).	chr9:117012808-117013045(+)$1	1	75	100	9.7547
((..(..((((.....)))).)..)	chr9:117044494-117044706(+)$1	1	182	207	8.8008
.(.(((((((......)))).))).	chr17:45915153-45915434(-)$1	1	149	174	9.0558
((((((.((((...)))).))))))	chr21:47556801-47557025(-)$1	1	185	210	10.0969
(....((((((....)))).))...	chr19:5663921-5664192(+)$1	1	223	248	11.0261
((((.(.((((...)))))))))))	chr17:17739925-17740221(-)$1	1	166	191	8.9521
))(((..((((....)))).))).(	chr16:74943297-74943534(-)$1	1	115	140	11.4546
.(((.(((.((....)).)))))).	chr11:429519-429752(-)$1	1	99	124	9.0053
(..((((((((....).))))))).	chr7:1522114-1522428(-)$1	1	117	142	9.7762
(((....((((...))))))))).)	chr2:232576505-232576750(+)$1	1	24	49	9.1107
(((((...(((....)))...))).	chr17:78931339-78931624(+)$1	1	95	120	12.1448
.(((.(.((((....))))).))).	chr14:105241889-105242251(-)$1	1	114	139	10.5953
.(((((.((((....))))..))))	chr12:133360559-133360929(-)$1	1	23	48	11.2219
((((((.((((...))))..)))))	chr9:117014776-117015026(+)$1	1	105	130	9.3616
((.((((((((....).))))))).	chr14:104145729-104145999(+)$1	1	184	209	9.3900
(((((..((((.....)))).))))	chr6:33272753-33273007(-)$1	1	41	66	8.8916
.((((((((((....))))..))))	chr17:53398020-53398294(+)$1	1	123	148	10.5922
.(((((..(((....)))....)))	chr17:61890556-61890818(+)$1	1	76	101	10.5182
(((((.(((.(....).))).))))	chr2:85769617-85769900(+)$1	1	231	256	9.5364
..(.(((((((....)))).))).)	chr11:67771312-67771671(-)$1	1	300	325	12.2048
(.(((..((((....))))....))	chr9:117002401-117002642(+)$1	1	82	107	12.7819
((.(((..(((....))).))))))	chr16:58549583-58549933(+)$1	1	256	281	11.2205
..(((.(((((....))))...).)	chr16:71487069-71487345(-)$1	1	107	132	12.5996
((..(((((((....))).))))..	chr1:178063602-178063923(+)$1	1	171	196	9.6393
.((((((((((....)))).)))))	chr20:42086901-42087144(+)$1	1	106	131	11.0945
..(((..((((....))))..))).	chr17:46051283-46051497(+)$1	1	40	65	9.9699
((....(((((....)))))....)	chr14:21966347-21966615(-)$1	1	174	199	9.5080
((((((..(((....)))....)))	chr19:12822103-12822380(-)$1	1	247	272	10.8705
((((((..(((....))))))))))	chr2:97296939-97297238(-)$1	1	154	179	10.9569
((((..(.(((....))))..))))	chr20:32258400-32258641(-)$1	1	48	73	10.2037
((((((.((((....)))).)))))	chr9:117027245-117027482(+)$1	1	116	141	11.4724
(((.(.(((((....))))).))))	chr12:53454090-53454353(+)$1	1	95	120	9.9445
.((((((((((....))))))))))	chr12:132198644-132198904(+)$1	1	181	206	9.4697
(((((...(((....)))...))))	chr1:2160049-2160337(+)$1	1	25	50	11.9138
(...(.(((((....))))).))))	chr1:27675797-27676144(+)$1	1	98	123	10.1635
((((..(((((....))))))))))	chr14:21821545-21821820(-)$1	1	225	250	9.7865
((.(((.((((...)))).))).))	chr2:70057115-70057385(+)$1	1	208	233	9.4680
)))((((.(((....)))...))))	chr20:62374160-62374396(+)$1	1	184	209	9.3177
(((....((((....))))))).))	chr16:31049334-31049596(+)$1	1	90	115	11.5989
....((.((((....)))).))..)	chr21:46912519-46912727(+)$1	1	25	50	11.0400
((.(((.((((....))))))).))	chr20:61460024-61460255(+)$1	1	131	156	12.3630
(((.(((((((....))))))).))	chr14:21464605-21464878(+)$1	1	111	136	9.6582
...((((((((....))))).))).	chr11:70505829-70506133(-)$1	1	39	64	9.4416
(((((((..((....))...)))))	chr2:232326150-232326372(-)$1	1	23	48	9.7546
((.(((.((((....)))).)))..	chr19:10782014-10782236(+)$1	1	172	197	10.9096
((..(((..((....))..)))...	chr2:113300042-113300392(+)$1	1	302	327	9.0734
..((((.((((....)))).)))).	chr16:50583232-50583497(+)$1	1	188	213	10.7867
..(((..((((....))))..))))	chr1:226053469-226053735(-)$1	1	9	34	12.8237
((((((.((((...)))).))))))	chr16:16244406-16244667(-)$1	1	43	68	9.2307
(.(..(..(((...))).)..))))	chr16:28962379-28962640(+)$1	1	235	260	8.8412
((((((.(.((....))).)))...	chr17:30687623-30687900(+)$1	1	36	61	9.7308
(((((....((....))....))))	chr20:3202377-3202609(+)$1	1	157	182	9.3506
....(((((((...)))).)))...	chr17:79652590-79652864(+)$1	1	213	238	10.1024
.((((((.(((....))).))))))	chr12:6879453-6879689(+)$1	1	153	178	9.8121
((.....((((....))))))..))	chr3:32927398-32927685(+)$1	1	161	186	9.6409
(((((...(((....)))...))))	chr17:56082180-56082402(-)$1	1	132	157	10.8391

#PSSM
c : 0.13	d : 0.12	e : 0.12	f : 0.12	g : 0.10	! : 0.06	b : 0.06	[ : 0.06	: : 0.05	# : 0.05	" : 0.03	( : 0.01	$ : 0.01	h : 0.01	
f : 0.17	e : 0.15	c : 0.13	g : 0.10	! : 0.08	# : 0.06	[ : 0.05	b : 0.05	d : 0.05	" : 0.03	a : 0.01	: : 0.01	= : 0.01	$ : 0.01	h : 0.01	
c : 0.18	f : 0.15	e : 0.12	[ : 0.10	g : 0.10	! : 0.08	# : 0.06	" : 0.03	a : 0.03	d : 0.03	$ : 0.03	i : 0.01	= : 0.01	
c : 0.27	f : 0.15	g : 0.13	# : 0.10	e : 0.08	! : 0.06	[ : 0.05	d : 0.03	b : 0.01	i : 0.01	= : 0.01	" : 0.01	$ : 0.01	
c : 0.29	f : 0.15	g : 0.13	# : 0.06	a : 0.05	[ : 0.05	e : 0.05	d : 0.05	! : 0.05	b : 0.03	i : 0.01	= : 0.01	$ : 0.01	
c : 0.20	! : 0.15	f : 0.12	g : 0.10	# : 0.06	[ : 0.06	a : 0.05	" : 0.05	d : 0.05	b : 0.03	e : 0.03	i : 0.01	= : 0.01	$ : 0.01	
! : 0.22	[ : 0.22	c : 0.08	e : 0.08	g : 0.06	d : 0.05	# : 0.05	" : 0.05	f : 0.05	a : 0.03	i : 0.01	b : 0.01	= : 0.01	$ : 0.01	
d : 0.51	! : 0.13	e : 0.08	g : 0.05	" : 0.05	[ : 0.05	c : 0.03	i : 0.01	= : 0.01	a : 0.01	# : 0.01	
d : 0.49	c : 0.24	e : 0.08	g : 0.05	[ : 0.03	! : 0.03	i : 0.01	= : 0.01	# : 0.01	
d : 0.49	c : 0.22	b : 0.08	e : 0.08	g : 0.05	i : 0.01	[ : 0.01	= : 0.01	
d : 0.48	c : 0.22	b : 0.08	e : 0.08	a : 0.05	i : 0.01	o : 0.01	= : 0.01	g : 0.01	
m : 0.81	l : 0.13	n : 0.03	o : 0.01	
m : 0.81	l : 0.13	n : 0.03	o : 0.01	
m : 0.81	l : 0.13	n : 0.03	o : 0.01	
m : 0.81	d : 0.12	n : 0.03	o : 0.01	c : 0.01	
d : 0.44	c : 0.22	b : 0.08	e : 0.08	a : 0.05	n : 0.03	i : 0.01	o : 0.01	= : 0.01	g : 0.01	
d : 0.49	c : 0.22	b : 0.08	e : 0.08	] : 0.05	i : 0.01	= : 0.01	g : 0.01	
d : 0.49	c : 0.22	e : 0.08	g : 0.05	] : 0.03	i : 0.01	= : 0.01	3 : 0.01	2 : 0.01	a : 0.01	4 : 0.01	
d : 0.37	] : 0.15	e : 0.10	3 : 0.08	g : 0.06	a : 0.05	4 : 0.05	c : 0.03	2 : 0.03	i : 0.01	= : 0.01	
c : 0.17	2 : 0.13	] : 0.13	e : 0.12	3 : 0.10	g : 0.08	d : 0.06	4 : 0.06	f : 0.03	i : 0.01	a : 0.01	= : 0.01	b : 0.01	
c : 0.20	] : 0.13	2 : 0.12	g : 0.12	3 : 0.08	f : 0.08	4 : 0.08	b : 0.05	e : 0.03	d : 0.03	i : 0.01	= : 0.01	
c : 0.31	g : 0.15	f : 0.13	e : 0.08	a : 0.06	4 : 0.06	b : 0.05	d : 0.05	i : 0.01	3 : 0.01	= : 0.01	2 : 0.01	
c : 0.20	f : 0.17	g : 0.13	e : 0.10	4 : 0.06	d : 0.06	] : 0.06	3 : 0.05	2 : 0.05	b : 0.01	i : 0.01	a : 0.01	= : 0.01	
c : 0.22	f : 0.17	g : 0.13	e : 0.08	d : 0.06	4 : 0.06	3 : 0.05	] : 0.05	2 : 0.03	b : 0.03	i : 0.01	: : 0.01	= : 0.01	9 : 0.01	
f : 0.17	c : 0.15	g : 0.12	d : 0.10	] : 0.08	e : 0.06	3 : 0.05	2 : 0.05	4 : 0.05	a : 0.03	: : 0.03	b : 0.03	= : 0.01	9 : 0.01	

#score	600.0632405856087
#seq	58
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_CDS_m2_run1.txt

#BEAR
$$eeeee[a[eeeee####iiii	chr8:95523530-95523805(-)$1	275	43	66	9.8219
iiiiiiiiiggggggg"""dddd	chr2:61697690-61697970(-)$1	280	69	92	8.3912
))))bbiiiiiiiii####gggg	chrM:14358-14574(-)$1	216	129	152	8.0494
^^^^^^^^^^^^^^^^^^^^ddd	chr16:30748693-30748932(+)$1	239	114	137	9.2948
^^^^^^^^^^^^^^^^^^^eeee	chr1:33236873-33237149(+)$1	276	119	142	10.1848
ggg$$$$$a[eeeee####eeee	chrM:14189-14398(-)$1	209	106	129	11.2615
======="""eeeee!!dddd[c	chr19:55653194-55653529(-)$1	335	76	99	8.1647
ffffff####a!!bb####eeee	chrM:14233-14442(-)$1	209	43	66	11.8730
^^^^^^^^^^^^^^^^^^^eeee	chr17:7417159-7417438(+)$1	279	22	45	10.1848
ggg$$$$$a[eeeee####eeee	chrM:14185-14389(-)$1	204	97	120	11.2615
ffffff####a!!bb####eeee	chrM:14249-14462(-)$1	213	63	86	11.8730
dd:bbccc"""ccc$$$$$eeee	chr14:99976838-99977105(+)$1	267	157	180	8.1828
!!ggggggg[eeeee####eeee	chr19:35759900-35760167(+)$1	267	117	140	11.3403
b[a"""iiiiiiiii####gggg	chrM:14283-14503(-)$1	220	58	81	10.4608
!!ccc[gggggggdddd"""ggg	chr12:53849597-53849814(+)$1	217	38	61	7.4972
^^^^^^^^^^^^^^^^^^^eeee	chr1:27736279-27736494(-)$1	215	24	47	10.1848
ggg"""ccc[eeeee####bb[b	chr1:8420254-8420570(-)$1	316	151	174	9.5644
!!ccc[gggggggdddd"""ggg	chr12:53849568-53849797(+)$1	229	67	90	7.4972
hhhggggggg"""bb"""a[ddd	chr19:39014364-39014659(+)$1	295	191	214	8.1720
ggggggg^^^^^^^^^^^^^^^^	chr1:153923955-153924222(-)$1	267	74	97	8.7144
b[dddd"""eeeee####=====	chr10:73958163-73958542(-)$1	379	1	24	9.2847
###ccc[bbffffff####eeee	chrX:53308719-53308996(-)$1	277	150	173	9.8174
b[a"""iiiiiiiii####gggg	chrM:14303-14517(-)$1	214	72	95	10.4608
ffffff####a!!bb####eeee	chrM:14198-14409(-)$1	211	10	33	11.8730
ggggggg"""eeeee"""eeeee	chr17:76198603-76198909(+)$1	306	28	51	10.4721
!!==========lll========	chr17:4793421-4793683(+)$1	262	200	223	6.7393
"""dddd"""dddd$$$$$bb^^	chr1:16262385-16262744(+)$1	359	51	74	8.0557
ffffff####a!!bb####eeee	chrM:14222-14433(-)$1	211	34	57	11.8730
ffffff[ffffff[bb"""eeee	chr12:53858528-53858736(+)$1	208	105	128	8.1468
b[a"""iiiiiiiii####gggg	chrM:14262-14473(-)$1	211	28	51	10.4608
^^^^^^^^^^^^^^^^^^^eeee	chr1:33236832-33237073(+)$1	241	160	183	10.1848
FFFFeeeee[a[ccc####ffff	chr17:79223775-79224035(-)$1	260	180	203	7.8918
c[affffff[a[ccc####ffff	chr17:79223716-79223975(-)$1	259	120	143	9.6690
ffffff####a!!bb####eeee	chrM:14273-14483(-)$1	210	84	107	11.8730
d!!ccciiiiiiiii"""bblll	chr12:53849677-53849885(+)$1	208	147	170	7.3239
ffffff####a!!bb####eeee	chrM:14242-14449(-)$1	207	50	73	11.8730
!!ccc[ccc[eeeee"""eeeee	chr3:10360782-10361102(-)$1	320	193	216	10.0907
!dddd!!ggggggg$$$$$eeee	chr16:58619269-58619537(-)$1	268	63	86	9.1460
^^^^^^^^^^^^^^^^^^^ffff	chr17:7417245-7417499(+)$1	254	83	106	9.1615
!!a[eeeee!!eeeee!!ddddl	chr19:55558644-55558929(+)$1	285	6	29	6.7752
"""ccc^^^^^^^^^^^^^^^^^	chrX:129147755-129148080(+)$1	325	153	176	9.1651
========[ffffff####dddd	chr19:50149871-50150184(+)$1	313	140	163	9.5388
d[ggggggg[bbccc####cccy	chr14:99976925-99977207(+)$1	282	103	126	8.9940
ggg$$$$$a[eeeee####eeee	chrM:14157-14385(-)$1	228	93	116	11.2615
cc[eeeee!!eeeee^^^^^^^^	chr12:7045551-7045779(+)$1	228	135	158	7.6480
eeeee!!bb[ccc[a!!aa[ccc	chr19:8468334-8468593(+)$1	259	170	193	7.3884
fffff==========a!!adddd	chr19:58198433-58198683(+)$1	250	170	193	8.3834

#otherMatches

#Seq PSSM
AAACUAUGUUAACGGAACUCCUG	chr8:95523530-95523805(-)$1	275	43	66	9.8219
cuccccucccccccgccGGUCGG	chr2:61697690-61697970(-)$1	280	69	92	8.3912
AGUAUCCUGAGGCAUGGGGGUCA	chrM:14358-14574(-)$1	216	129	152	8.0494
ccuucuccucccccuccuucaca	chr16:30748693-30748932(+)$1	239	114	137	9.2948
AUCCACCCCCACCACCCACUAAG	chr1:33236873-33237149(+)$1	276	119	142	10.1848
AAGGAGAGGGGUCAGGGUUGAUU	chrM:14189-14398(-)$1	209	106	129	11.2615
uaccuucuuuuguguguuucacu	chr19:55653194-55653529(-)$1	335	76	99	8.1647
UUUAGUGGGGUUAGCGAUGGAGG	chrM:14233-14442(-)$1	209	43	66	11.8730
UAUUCACCCACCUCUCCCAAGUA	chr17:7417159-7417438(+)$1	279	22	45	10.1848
AAGGAGAGGGGUCAGGGUUGAUU	chrM:14185-14389(-)$1	204	97	120	11.2615
UUUAGUGGGGUUAGCGAUGGAGG	chrM:14249-14462(-)$1	213	63	86	11.8730
GCCGCCAGCCAGCUACCCACCUC	chr14:99976838-99977105(+)$1	267	157	180	8.1828
ACCCGGGUCUGGAUCCCGCUGCC	chr19:35759900-35760167(+)$1	267	117	140	11.3403
AGUAUCCUGAGGCAUGGGGGUCA	chrM:14283-14503(-)$1	220	58	81	10.4608
UUUAACUUCUUUUGGAUCUUGUU	chr12:53849597-53849814(+)$1	217	38	61	7.4972
CCCCAUCUUUCCCACCUCACCCU	chr1:27736279-27736494(-)$1	215	24	47	10.1848
CCGACCUGCCCCUCCACCUCUAC	chr1:8420254-8420570(-)$1	316	151	174	9.5644
UUUAACUUCUUUUGGAUCUUGUU	chr12:53849568-53849797(+)$1	229	67	90	7.4972
CGGGAGAUAUACAGGUCAGCCCC	chr19:39014364-39014659(+)$1	295	191	214	8.1720
CUGCAGGACUUCAUUCACCUCUC	chr1:153923955-153924222(-)$1	267	74	97	8.7144
AGAAAAACCAAAUGUAUUGGUUA	chr10:73958163-73958542(-)$1	379	1	24	9.2847
cucAGGUCCACAGCGUCUCAUAC	chrX:53308719-53308996(-)$1	277	150	173	9.8174
AGUAUCCUGAGGCAUGGGGGUCA	chrM:14303-14517(-)$1	214	72	95	10.4608
UUUAGUGGGGUUAGCGAUGGAGG	chrM:14198-14409(-)$1	211	10	33	11.8730
AGACGGCGAAGGGGAGAAAGUGG	chr17:76198603-76198909(+)$1	306	28	51	10.4721
UCCUCUGGGAAGAUGCUUUUCAG	chr17:4793421-4793683(+)$1	262	200	223	6.7393
CAAGACACCAGAUGCCAAAGCUg	chr1:16262385-16262744(+)$1	359	51	74	8.0557
UUUAGUGGGGUUAGCGAUGGAGG	chrM:14222-14433(-)$1	211	34	57	11.8730
gaggugagaggggauguucaguc	chr12:53858528-53858736(+)$1	208	105	128	8.1468
AGUAUCCUGAGGCAUGGGGGUCA	chrM:14262-14473(-)$1	211	28	51	10.4608
AUCCACCCCCACCACCCACUAAG	chr1:33236832-33237073(+)$1	241	160	183	10.1848
GAGUGUGCUGAAGUCAAGAGCCU	chr17:79223775-79224035(-)$1	260	180	203	7.8918
GAGUGUGCUGAAGUCAAGAGCCU	chr17:79223716-79223975(-)$1	259	120	143	9.6690
UUUAGUGGGGUUAGCGAUGGAGG	chrM:14273-14483(-)$1	210	84	107	11.8730
GCUUCCAGAGAGCUUGUUGAUUU	chr12:53849677-53849885(+)$1	208	147	170	7.3239
UUUAGUGGGGUUAGCGAUGGAGG	chrM:14242-14449(-)$1	207	50	73	11.8730
CCUCUUCCACUGUCUGCCUUUCU	chr3:10360782-10361102(-)$1	320	193	216	10.0907
UAGAGCAAAAGAGGAUUGUUUGU	chr16:58619269-58619537(-)$1	268	63	86	9.1460
uacucgcccacuucccccaagua	chr17:7417245-7417499(+)$1	254	83	106	9.1615
AUGAGGCCUCAGGGACGGUCUCU	chr19:55558644-55558929(+)$1	285	6	29	6.7752
ccccaucuuuacuccagccccua	chrX:129147755-129148080(+)$1	325	153	176	9.1651
GGGGACAGAGAUCCCAUCCCUCU	chr19:50149871-50150184(+)$1	313	140	163	9.5388
CCCUGGAGGACAGCCUCCUGUGC	chr14:99976925-99977207(+)$1	282	103	126	8.9940
AAGGAGAGGGGUCAGGGUUGAUU	chrM:14157-14385(-)$1	228	93	116	11.2615
UGUCUCCAAUCAGCCCCCCAAGU	chr12:7045551-7045779(+)$1	228	135	158	7.6480
GGCCCCUCCCUGCUGUCCCUCUG	chr19:8468334-8468593(+)$1	259	170	193	7.3884
GAAUUCAUUCACCACCAGAGACG	chr19:58198433-58198683(+)$1	250	170	193	8.3834

#DB
..(((((.(.(((((....((((	chr8:95523530-95523805(-)$1	1	43	66	9.8219
((((((((((((((((...((((	chr2:61697690-61697970(-)$1	1	69	92	8.3912
....(((((((((((....((((	chrM:14358-14574(-)$1	1	129	152	8.0494
....................)))	chr16:30748693-30748932(+)$1	1	114	137	9.2948
...................))))	chr1:33236873-33237149(+)$1	1	119	142	10.1848
(((.....(.(((((....((((	chrM:14189-14398(-)$1	1	106	129	11.2615
(((((((...(((((..((((.(	chr19:55653194-55653529(-)$1	1	76	99	8.1647
((((((....(..((....((((	chrM:14233-14442(-)$1	1	43	66	11.8730
...................))))	chr17:7417159-7417438(+)$1	1	22	45	10.1848
(((.....(.(((((....((((	chrM:14185-14389(-)$1	1	97	120	11.2615
((((((....(..((....((((	chrM:14249-14462(-)$1	1	63	86	11.8730
)).(((((...(((.....((((	chr14:99976838-99977105(+)$1	1	157	180	8.1828
..(((((((.(((((....((((	chr19:35759900-35760167(+)$1	1	117	140	11.3403
(.(...(((((((((....((((	chrM:14283-14503(-)$1	1	58	81	10.4608
..(((.(((((((((((...(((	chr12:53849597-53849814(+)$1	1	38	61	7.4972
...................))))	chr1:27736279-27736494(-)$1	1	24	47	10.1848
(((...(((.(((((....((.(	chr1:8420254-8420570(-)$1	1	151	174	9.5644
..(((.(((((((((((...(((	chr12:53849568-53849797(+)$1	1	67	90	7.4972
)))(((((((...((...(.(((	chr19:39014364-39014659(+)$1	1	191	214	8.1720
(((((((................	chr1:153923955-153924222(-)$1	1	74	97	8.7144
(.((((...(((((....(((((	chr10:73958163-73958542(-)$1	1	1	24	9.2847
...(((.((((((((....((((	chrX:53308719-53308996(-)$1	1	150	173	9.8174
(.(...(((((((((....((((	chrM:14303-14517(-)$1	1	72	95	10.4608
((((((....(..((....((((	chrM:14198-14409(-)$1	1	10	33	11.8730
(((((((...(((((...(((((	chr17:76198603-76198909(+)$1	1	28	51	10.4721
..((((((((((...))))))))	chr17:4793421-4793683(+)$1	1	200	223	6.7393
...((((...((((.....((..	chr1:16262385-16262744(+)$1	1	51	74	8.0557
((((((....(..((....((((	chrM:14222-14433(-)$1	1	34	57	11.8730
((((((.((((((.((...((((	chr12:53858528-53858736(+)$1	1	105	128	8.1468
(.(...(((((((((....((((	chrM:14262-14473(-)$1	1	28	51	10.4608
...................))))	chr1:33236832-33237073(+)$1	1	160	183	10.1848
))))(((((.(.(((....((((	chr17:79223775-79224035(-)$1	1	180	203	7.8918
(.(((((((.(.(((....((((	chr17:79223716-79223975(-)$1	1	120	143	9.6690
((((((....(..((....((((	chrM:14273-14483(-)$1	1	84	107	11.8730
(..((((((((((((...((...	chr12:53849677-53849885(+)$1	1	147	170	7.3239
((((((....(..((....((((	chrM:14242-14449(-)$1	1	50	73	11.8730
..(((.(((.(((((...(((((	chr3:10360782-10361102(-)$1	1	193	216	10.0907
.((((..(((((((.....((((	chr16:58619269-58619537(-)$1	1	63	86	9.1460
...................))))	chr17:7417245-7417499(+)$1	1	83	106	9.1615
..(.(((((..(((((..((((.	chr19:55558644-55558929(+)$1	1	6	29	6.7752
...(((.................	chrX:129147755-129148080(+)$1	1	153	176	9.1651
((((((((.((((((....((((	chr19:50149871-50150184(+)$1	1	140	163	9.5388
(.(((((((.(((((....(((.	chr14:99976925-99977207(+)$1	1	103	126	8.9940
(((.....(.(((((....((((	chrM:14157-14385(-)$1	1	93	116	11.2615
((.(((((..(((((........	chr12:7045551-7045779(+)$1	1	135	158	7.6480
(((((..((.(((.(..((.(((	chr19:8468334-8468593(+)$1	1	170	193	7.3884
)))))(((((((((((..(((((	chr19:58198433-58198683(+)$1	1	170	193	8.3834

#PSSM
f : 0.17	! : 0.14	^ : 0.12	g : 0.12	b : 0.08	d : 0.06	= : 0.04	" : 0.04	c : 0.04	$ : 0.02	i : 0.02	) : 0.02	h : 0.02	# : 0.02	F : 0.02	e : 0.02	
f : 0.17	! : 0.14	^ : 0.12	g : 0.12	[ : 0.12	= : 0.04	d : 0.04	" : 0.04	$ : 0.02	i : 0.02	) : 0.02	h : 0.02	# : 0.02	F : 0.02	c : 0.02	e : 0.02	
g : 0.17	f : 0.17	^ : 0.12	a : 0.10	= : 0.06	c : 0.06	e : 0.04	d : 0.04	" : 0.04	i : 0.02	) : 0.02	: : 0.02	h : 0.02	# : 0.02	F : 0.02	! : 0.02	[ : 0.02	
f : 0.19	^ : 0.12	c : 0.12	g : 0.10	" : 0.08	e : 0.06	$ : 0.06	= : 0.06	d : 0.06	i : 0.02	) : 0.02	b : 0.02	F : 0.02	[ : 0.02	
f : 0.19	^ : 0.12	c : 0.12	e : 0.10	g : 0.10	" : 0.08	$ : 0.06	= : 0.06	d : 0.06	b : 0.04	i : 0.02	
f : 0.17	^ : 0.12	g : 0.10	e : 0.08	= : 0.08	c : 0.08	" : 0.08	$ : 0.06	[ : 0.06	d : 0.04	! : 0.04	i : 0.02	b : 0.02	
^ : 0.14	g : 0.14	i : 0.12	# : 0.12	e : 0.08	= : 0.08	$ : 0.06	c : 0.06	[ : 0.04	! : 0.04	" : 0.02	d : 0.02	f : 0.02	
^ : 0.17	i : 0.12	# : 0.12	g : 0.12	" : 0.08	$ : 0.06	c : 0.06	= : 0.06	e : 0.06	b : 0.04	f : 0.04	[ : 0.02	
^ : 0.17	i : 0.12	# : 0.12	g : 0.12	" : 0.10	a : 0.08	c : 0.04	b : 0.04	= : 0.04	f : 0.04	e : 0.04	[ : 0.02	! : 0.02	
[ : 0.23	^ : 0.17	# : 0.12	g : 0.10	i : 0.10	" : 0.08	f : 0.06	= : 0.04	! : 0.04	e : 0.02	
e : 0.23	^ : 0.17	a : 0.17	i : 0.10	g : 0.08	f : 0.06	" : 0.04	= : 0.04	d : 0.02	! : 0.02	b : 0.02	c : 0.02	
e : 0.25	^ : 0.17	! : 0.12	i : 0.10	g : 0.08	f : 0.06	c : 0.04	= : 0.04	[ : 0.04	" : 0.02	d : 0.02	b : 0.02	
e : 0.25	^ : 0.17	! : 0.12	i : 0.10	c : 0.10	g : 0.08	f : 0.06	" : 0.02	l : 0.02	d : 0.02	= : 0.02	
e : 0.25	^ : 0.17	b : 0.14	i : 0.10	c : 0.08	d : 0.06	g : 0.04	f : 0.04	[ : 0.04	l : 0.02	= : 0.02	
e : 0.23	^ : 0.17	b : 0.17	i : 0.10	$ : 0.06	c : 0.06	d : 0.04	f : 0.04	g : 0.02	# : 0.02	l : 0.02	a : 0.02	= : 0.02	
# : 0.46	^ : 0.19	" : 0.08	$ : 0.06	! : 0.04	d : 0.04	g : 0.02	= : 0.02	b : 0.02	e : 0.02	a : 0.02	
# : 0.46	^ : 0.19	" : 0.12	! : 0.08	$ : 0.06	d : 0.04	= : 0.02	
# : 0.46	^ : 0.19	" : 0.17	$ : 0.06	! : 0.04	d : 0.02	= : 0.02	a : 0.02	
# : 0.44	^ : 0.19	" : 0.08	$ : 0.06	a : 0.06	d : 0.04	= : 0.04	e : 0.04	b : 0.02	
e : 0.42	d : 0.10	g : 0.08	^ : 0.08	b : 0.06	f : 0.06	" : 0.04	[ : 0.04	= : 0.04	i : 0.02	c : 0.02	
e : 0.42	d : 0.14	g : 0.12	^ : 0.06	f : 0.06	b : 0.04	= : 0.04	c : 0.04	i : 0.02	l : 0.02	
e : 0.42	d : 0.12	g : 0.12	^ : 0.08	f : 0.06	[ : 0.04	= : 0.04	c : 0.04	i : 0.02	l : 0.02	
e : 0.42	g : 0.12	d : 0.10	^ : 0.08	f : 0.06	c : 0.04	= : 0.04	l : 0.04	i : 0.02	b : 0.02	y : 0.02	

#score	445.5284403987552
#seq	47
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_transcript_m1_run1.txt

#BEAR
f!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrY:7193119-7193413(+)$1	294	9	43	42.1740
!!dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:110315959-110316178(-)$1	219	55	89	41.7891
ffffff^^^^^^^^^^^^^^^^^^^^^^^fffff	chr11:122573473-122573840(+)$1	367	187	221	39.0335
!!dddd^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr5:14437069-14437347(+)$1	278	91	125	40.2697
[a^^^^^^^^^^^^^^^^^^^^^^^^^^^a]ddd	chr12:19381102-19381434(+)$1	332	71	105	39.2791
+eeeee^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr5:115205982-115206256(+)$1	274	96	130	38.7324
ddd[dddd^^^^^^^^^^^^^^^^^^^^^ddddd	chr2:241553313-241553540(+)$1	227	142	176	35.9544
gggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:2202226-2202463(-)$1	237	137	171	42.1495
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr18:77877558-77877809(+)$1	251	15	49	40.2916
dd[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr20:30814314-30814576(+)$1	262	59	93	41.8215
iiiiiiiii^^^^^^^^^^^^^^^^^^^iiiiii	chr8:18602463-18602758(-)$1	295	201	235	33.8539
fffff!!ccc^^^^^^^^^^^^^^^^^^^cccff	chr2:106428409-106428680(+)$1	271	99	133	34.6947
bb!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22b	chrM:13672-13879(+)$1	207	53	87	36.9702
ff[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:34317795-34318073(-)$1	278	176	210	42.0790
iiiiii^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:128538758-128539032(-)$1	274	101	135	42.0878
eee[dddd^^^^^^^^^^^^^^^^^^^dddd333	chr1:109928979-109929258(-)$1	279	100	134	34.1831
ffffff^^^^^^^^^^^^^^^^^^^^^^ffffff	chr2:101466538-101466744(+)$1	206	76	110	37.7404
[eeeee^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr12:62778651-62778889(+)$1	238	130	164	39.4917
dddddddd^^^^^^^^^^^^^^^^^^^^dddd]d	chrX:46185457-46185778(-)$1	321	193	227	34.6496
i!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:114156274-114156510(-)$1	236	178	212	42.2744
[eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:24774308-24774593(-)$1	285	235	269	42.0489
[eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:43041067-43041424(-)$1	357	150	184	42.0489
======^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:132852292-132852546(-)$1	254	180	214	42.3132
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr1:46030138-46030419(+)$1	281	108	142	38.7061
:::ccc^^^^^^^^^^^^^^^^^^^^^^cccddd	chr11:120082351-120082695(+)$1	344	60	94	35.4193
fff[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:95044808-95045064(-)$1	256	136	170	41.2977
======^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:12246963-12247257(+)$1	294	15	49	42.3132
gggggg^^^^^^^^^^^^^^^^^^^^^^^^^^gg	chr1:46074096-46074322(+)$1	226	113	147	41.3469
ffffff^^^^^^^^^^^^^^^^^^^^^^ffffff	chr2:101466587-101466823(+)$1	236	27	61	37.7404
=======^^^^^^^^^^^^^^^^^^^^^^=====	chr12:23738289-23738538(-)$1	249	50	84	39.0435
feeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^e	chr6:38066755-38067037(+)$1	282	56	90	41.4388
eeeeeccc^^^^^^^^^^^^^^^^^^^^ccc:FF	chr16:70438338-70438595(-)$1	257	73	107	35.1696
cc[ccc^^^^^^^^^^^^^^^^^^^^^^^ccccc	chr9:20399388-20399652(-)$1	264	95	129	39.9589
gggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:23986682-23986897(-)$1	215	123	157	42.1495
ffffff^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr17:40524799-40525102(-)$1	303	162	196	39.7297
ggggggg^^^^^^^^^^^^^^^^^^^^ggggggg	chr3:65361070-65361309(-)$1	239	5	39	35.6814
!!ccc[bb^^^^^^^^^^^^^^^^^^^bb]ccc2	chr12:102095842-102096092(+)$1	250	172	206	34.6763
:bb^^^^^^^^^^^^^^^^^^^^^^^^^^^bb::	chr5:93083781-93084067(-)$1	286	59	93	36.5464
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr19:41816370-41816697(+)$1	327	162	196	38.7061
gggggg^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr16:50621260-50621485(+)$1	225	80	114	39.6579
bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb66	chr2:97376742-97377045(-)$1	303	236	270	38.8521
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^cc	chr6:128316159-128316431(-)$1	272	58	92	41.1989
ggggg[bb^^^^^^^^^^^^^^^^^^^bb]gggg	chr6:116372770-116373060(-)$1	290	251	285	34.5046
!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:45486738-45487015(-)$1	277	156	190	42.0228
iiiiii^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr8:121670306-121670570(-)$1	264	23	57	42.0878
hh[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr20:6008446-6008753(+)$1	307	204	238	41.7928
bb[ccc^^^^^^^^^^^^^^^^^^^^^ccc333b	chrM:13638-13840(+)$1	202	88	122	37.3070
!eeeee^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr2:210872092-210872339(+)$1	247	156	190	40.1406
======^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr5:109143902-109144189(+)$1	287	58	92	42.3132
ddd[ccc^^^^^^^^^^^^^^^^^^^^^^ccc]d	chr7:140578214-140578525(-)$1	311	28	62	38.4525
[dddd[ccc^^^^^^^^^^^^^^^^^^^ccc]dd	chr13:50616220-50616465(-)$1	245	134	168	34.6939
""dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr5:78117235-78117524(-)$1	289	72	106	41.1913
h[ffffff^^^^^^^^^^^^^^^^^^^^^fffff	chr5:74642873-74643122(+)$1	249	126	160	36.4511
ff[ccc^^^^^^^^^^^^^^^^^^^^^^^ccc]f	chr6:157311237-157311466(+)$1	229	61	95	39.9481
[ffffff^^^^^^^^^^^^^^^^^^^^^^fffff	chr1:78449905-78450173(+)$1	268	221	255	38.0971
ggggggg^^^^^^^^^^^^^^^^^^^^^^ggggg	chr1:78100355-78100616(-)$1	261	1	35	38.5145
eeeee[ccc^^^^^^^^^^^^^^^^^^^^cccee	chr10:34761406-34761679(-)$1	273	136	170	36.0514
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd2	chr17:47818810-47819129(-)$1	319	75	109	38.3313
gggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:90385858-90386138(-)$1	280	104	138	42.1495
cc[eeeee^^^^^^^^^^^^^^^^^^^^eeeee]	chr7:44516603-44516860(-)$1	257	88	122	35.6760
(ccc^^^^^^^^^^^^^^^^^^^^^^^^^ccc99	chr17:47109884-47110168(+)$1	284	138	172	38.5208
[ggggggg^^^^^^^^^^^^^^^^^^^ggggggg	chr3:132413879-132414163(-)$1	284	202	236	34.4878
heeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:35836239-35836534(-)$1	295	207	241	41.6711
""dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr7:91670686-91670997(+)$1	311	165	199	41.1913

#otherMatches

#Seq PSSM
GUAGCAUCCAUCUAUACCCAUAUCCUAACAUCUC	chrY:7193119-7193413(+)$1	294	9	43	42.1740
CAUUGGAAACAUGCCUUUAUAAAACUCUUUAAAU	chr2:110315959-110316178(-)$1	219	55	89	41.7891
UUGUUUUCUCAUUUAUUCACUCAUUCUAUAAACA	chr11:122573473-122573840(+)$1	367	187	221	39.0335
cuuuauucuaaccuucuuccuuuccucauuugua	chr5:14437069-14437347(+)$1	278	91	125	40.2697
UCCCUUUGUCUAAUACUCACAACCUUUCAGUCCU	chr12:19381102-19381434(+)$1	332	71	105	39.2791
uggguuucuuaacacauguauccaaaacuaaccc	chr5:115205982-115206256(+)$1	274	96	130	38.7324
AUGUGGGCCCUAACGCUAACCCUAACCAUGCCUC	chr2:241553313-241553540(+)$1	227	142	176	35.9544
UGGUGCUCUCUCUUCAUCCUUCACCUCUCUGCUA	chr6:2202226-2202463(-)$1	237	137	171	42.1495
UUUCUAAACUAUAUCUAAACCCUGCUGCACAUAG	chr18:77877558-77877809(+)$1	251	15	49	40.2916
ugccaguuuauaaccacacccaccucccuaaaca	chr20:30814314-30814576(+)$1	262	59	93	41.8215
aaggagaagauaacaucacuuaacaucacuucuc	chr8:18602463-18602758(-)$1	295	201	235	33.8539
UUaaucagcuucuaauuaaccuacuaaccagcau	chr2:106428409-106428680(+)$1	271	99	133	34.6947
CGCAGGAUUUCUCAUUACUAACAACAUUUCCCCC	chrM:13672-13879(+)$1	207	53	87	36.9702
aacucucccacccuccuccuugucucccuccccu	chr11:34317795-34318073(-)$1	278	176	210	42.0790
gaguuaccuuuuuuauaaccacacccauccaccc	chr2:128538758-128539032(-)$1	274	101	135	42.0878
CUUCCUGGCCUAUAUUAACCCUCUGUUCCAGUUA	chr1:109928979-109929258(-)$1	279	100	134	34.1831
AAAGGUAAUCAAAAUGUAAAGAUCAUUAACCUUU	chr2:101466538-101466744(+)$1	206	76	110	37.7404
ugaaaguaacuucuucuuuuucuaccucucuuuc	chr12:62778651-62778889(+)$1	238	130	164	39.4917
AGCCCUUCCCCCAUACCUGCAUCUCAUUGAAGAG	chrX:46185457-46185778(-)$1	321	193	227	34.6496
UGCCCUUACUUUCACACAUUUUUUCCUCCCUGCU	chr3:114156274-114156510(-)$1	236	178	212	42.2744
GGGGUGGAUACCCCAUUUUGCCCUCCCCCAUCAA	chr14:24774308-24774593(-)$1	285	235	269	42.0489
uaagccuuaauauuauauaaaaacucuccuccua	chr10:43041067-43041424(-)$1	357	150	184	42.0489
agcauguaaaucccuuuuuuucuguaaagcuuaa	chrX:132852292-132852546(-)$1	254	180	214	42.3132
UUAAUCUUUUCCCCCUUCUAACCUCUUUUGCUGG	chr1:46030138-46030419(+)$1	281	108	142	38.7061
UCUGCUUCCCUUUCUCACUCCCUCCUCCAGCGCU	chr11:120082351-120082695(+)$1	344	60	94	35.4193
GAUACUCAAUACUAACAUUAUACUAUUUUAAAUA	chr7:95044808-95045064(-)$1	256	136	170	41.2977
gagacuccauaucaaaaaaaaaaaaaaaaaaaaa	chr10:12246963-12247257(+)$1	294	15	49	42.3132
GCUUAUAAACUAACACUUUUACUAACUGCAAAAU	chr1:46074096-46074322(+)$1	226	113	147	41.3469
AAAGGUAAUCAAAAUGUAAAGAUCAUUAACCUUU	chr2:101466587-101466823(+)$1	236	27	61	37.7404
AGUGAGUUUUGCAUUUAAAUUUUAUUUUUACUUA	chr12:23738289-23738538(-)$1	249	50	84	39.0435
UGCCUUUUAAAAACAUAAAUAUUCCUAUUUCCUG	chr6:38066755-38067037(+)$1	282	56	90	41.4388
gcgacugcaccauuucacauucccaauagcaaag	chr16:70438338-70438595(-)$1	257	73	107	35.1696
gccacaccccaacuaaccccucccuccuuugugc	chr9:20399388-20399652(-)$1	264	95	129	39.9589
UAAAUAUAUCCUCACACUCUUCUUUUACCUCCUU	chr12:23986682-23986897(-)$1	215	123	157	42.1495
aacucgauacauuauuauuaaccaaauuccugag	chr17:40524799-40525102(-)$1	303	162	196	39.7297
AUUUAGUGGCAGCUUUAUUCAUCCCUAACUAAAU	chr3:65361070-65361309(-)$1	239	5	39	35.6814
UGUUACUCCAUUCUCUAUUACAUAUCUGAUUAAA	chr12:102095842-102096092(+)$1	250	172	206	34.6763
UGCUAACCUUUUCCUUUUAUUCUUCUUCCUGCUA	chr5:93083781-93084067(-)$1	286	59	93	36.5464
UCUCAAAUUAACAGAAACCUCUCUACCCCGGCCU	chr19:41816370-41816697(+)$1	327	162	196	38.7061
uaauacuucuauuaacauagcccaacauuguauu	chr16:50621260-50621485(+)$1	225	80	114	39.6579
GCUCAUUUAACCCAUUACCCUGAAACUCUUGCCU	chr2:97376742-97377045(-)$1	303	236	270	38.8521
AUAACAGCACCCUAUUAUAAAUACAAACAUUCUU	chr6:128316159-128316431(-)$1	272	58	92	41.1989
GCAGGGUUCCUUACAGAUAUUUUCCUAAAGCCUG	chr6:116372770-116373060(-)$1	290	251	285	34.5046
UCCCAAAAUAUCCAUUCUCUCCUCACUCUUUGCU	chr17:45486738-45487015(-)$1	277	156	190	42.0228
UCCAGCUUCUAUCUCCUCUUCAGCAUACUCUCUU	chr8:121670306-121670570(-)$1	264	23	57	42.0878
uuuguguuuuuauauccuuucauuucuuuacugu	chr20:6008446-6008753(+)$1	307	204	238	41.7928
GCAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13638-13840(+)$1	202	88	122	37.3070
AUGUGAUACUACCAACCUCCCAUCUUUUUUUUAC	chr2:210872092-210872339(+)$1	247	156	190	40.1406
GUUCUGAAUUUUUCUAAUAAACACGUAACUUCCU	chr5:109143902-109144189(+)$1	287	58	92	42.3132
uaauuucccuacuauacugugaaauacuagaacu	chr7:140578214-140578525(-)$1	311	28	62	38.4525
ugcagugguaccaucucagcucaccgcaaccucu	chr13:50616220-50616465(-)$1	245	134	168	34.6939
GCUCAAUUUUCCCACAUUCUAAAAAUUCCUUCCU	chr5:78117235-78117524(-)$1	289	72	106	41.1913
CCUUCAUUGAUAUGUUUGAUCUGUUUUAGGAUGA	chr5:74642873-74643122(+)$1	249	126	160	36.4511
UUCCUUAACuuuuuuuuuuuuuuuuuuuaaagag	chr6:157311237-157311466(+)$1	229	61	95	39.9481
ucuuucuuucuuucuuucuuuuuuuUUCCAGAAA	chr1:78449905-78450173(+)$1	268	221	255	38.0971
UCUAACUAAUCAUCCUGCAUCUCAUUCAAAGUUA	chr1:78100355-78100616(-)$1	261	1	35	38.5145
UACAGAGGUACCUAACAACUGAAUAACUAACCCU	chr10:34761406-34761679(-)$1	273	136	170	36.0514
AUUCCUGUUUUACUUUGCUCUUCUAACUCCAGAU	chr17:47818810-47819129(-)$1	319	75	109	38.3313
GGCAGAACAAGUACUAAUACUAAUACCCUUUACU	chr14:90385858-90386138(-)$1	280	104	138	42.1495
UCAUGGAACAAUCUAACAUAUUAACCCCUUCUAG	chr7:44516603-44516860(-)$1	257	88	122	35.6760
UGUAAAAUCCUACCUCUUCUUCAAAUACCUACCA	chr17:47109884-47110168(+)$1	284	138	172	38.5208
CAUAAAACUACCACUUUCCUUUAUCAUGUUUUAU	chr3:132413879-132414163(-)$1	284	202	236	34.4878
AUUGUUUCCCUAGUACACUUUAAUCUACAUAUUU	chr6:35836239-35836534(-)$1	295	207	241	41.6711
AACUGCUGUAUAAAAUAUACUCACAAAACCAUUG	chr7:91670686-91670997(+)$1	311	165	199	41.1913

#DB
(..(((............................	chrY:7193119-7193413(+)$1	1	9	43	42.1740
..((((............................	chr2:110315959-110316178(-)$1	1	55	89	41.7891
((((((.......................)))))	chr11:122573473-122573840(+)$1	1	187	221	39.0335
..((((.........................)))	chr5:14437069-14437347(+)$1	1	91	125	40.2697
.(...........................).)))	chr12:19381102-19381434(+)$1	1	71	105	39.2791
.(((((.......................)))))	chr5:115205982-115206256(+)$1	1	96	130	38.7324
(((.((((.....................)))))	chr2:241553313-241553540(+)$1	1	142	176	35.9544
((((((............................	chr6:2202226-2202463(-)$1	1	137	171	42.1495
((((((.........................)))	chr18:77877558-77877809(+)$1	1	15	49	40.2916
((.(((............................	chr20:30814314-30814576(+)$1	1	59	93	41.8215
(((((((((...................))))))	chr8:18602463-18602758(-)$1	1	201	235	33.8539
(((((..(((...................)))))	chr2:106428409-106428680(+)$1	1	99	133	34.6947
((..(((.....................)))..)	chrM:13672-13879(+)$1	1	53	87	36.9702
((.(((............................	chr11:34317795-34318073(-)$1	1	176	210	42.0790
((((((............................	chr2:128538758-128539032(-)$1	1	101	135	42.0878
(((.((((...................))))...	chr1:109928979-109929258(-)$1	1	100	134	34.1831
((((((......................))))))	chr2:101466538-101466744(+)$1	1	76	110	37.7404
.(((((.......................)))))	chr12:62778651-62778889(+)$1	1	130	164	39.4917
((((((((....................)))).)	chrX:46185457-46185778(-)$1	1	193	227	34.6496
(..(((............................	chr3:114156274-114156510(-)$1	1	178	212	42.2744
.(((((............................	chr14:24774308-24774593(-)$1	1	235	269	42.0489
.(((((............................	chr10:43041067-43041424(-)$1	1	150	184	42.0489
((((((............................	chrX:132852292-132852546(-)$1	1	180	214	42.3132
.............................)))))	chr1:46030138-46030419(+)$1	1	108	142	38.7061
...(((......................)))(((	chr11:120082351-120082695(+)$1	1	60	94	35.4193
(((.((............................	chr7:95044808-95045064(-)$1	1	136	170	41.2977
((((((............................	chr10:12246963-12247257(+)$1	1	15	49	42.3132
((((((..........................))	chr1:46074096-46074322(+)$1	1	113	147	41.3469
((((((......................))))))	chr2:101466587-101466823(+)$1	1	27	61	37.7404
(((((((......................)))))	chr12:23738289-23738538(-)$1	1	50	84	39.0435
((((((...........................)	chr6:38066755-38067037(+)$1	1	56	90	41.4388
)))))(((....................))).))	chr16:70438338-70438595(-)$1	1	73	107	35.1696
((.(((.......................)))))	chr9:20399388-20399652(-)$1	1	95	129	39.9589
((((((............................	chr12:23986682-23986897(-)$1	1	123	157	42.1495
((((((........................))))	chr17:40524799-40525102(-)$1	1	162	196	39.7297
(((((((....................)))))))	chr3:65361070-65361309(-)$1	1	5	39	35.6814
..(((.((...................)).))).	chr12:102095842-102096092(+)$1	1	172	206	34.6763
.((...........................))..	chr5:93083781-93084067(-)$1	1	59	93	36.5464
.............................)))))	chr19:41816370-41816697(+)$1	1	162	196	38.7061
((((((.......................)))))	chr16:50621260-50621485(+)$1	1	80	114	39.6579
((............................))..	chr2:97376742-97377045(-)$1	1	236	270	38.8521
.(((............................))	chr6:128316159-128316431(-)$1	1	58	92	41.1989
(((((.((...................)).))))	chr6:116372770-116373060(-)$1	1	251	285	34.5046
.(((((............................	chr17:45486738-45487015(-)$1	1	156	190	42.0228
((((((............................	chr8:121670306-121670570(-)$1	1	23	57	42.0878
((.(((............................	chr20:6008446-6008753(+)$1	1	204	238	41.7928
((.(((.....................)))...)	chrM:13638-13840(+)$1	1	88	122	37.3070
.(((((........................))))	chr2:210872092-210872339(+)$1	1	156	190	40.1406
((((((............................	chr5:109143902-109144189(+)$1	1	58	92	42.3132
(((.(((......................))).)	chr7:140578214-140578525(-)$1	1	28	62	38.4525
.((((.(((...................))).))	chr13:50616220-50616465(-)$1	1	134	168	34.6939
..((((...........................)	chr5:78117235-78117524(-)$1	1	72	106	41.1913
(.((((((.....................)))))	chr5:74642873-74643122(+)$1	1	126	160	36.4511
((.(((.......................))).)	chr6:157311237-157311466(+)$1	1	61	95	39.9481
.((((((......................)))))	chr1:78449905-78450173(+)$1	1	221	255	38.0971
(((((((......................)))))	chr1:78100355-78100616(-)$1	1	1	35	38.5145
(((((.(((....................)))))	chr10:34761406-34761679(-)$1	1	136	170	36.0514
.............................)))).	chr17:47818810-47819129(-)$1	1	75	109	38.3313
((((((............................	chr14:90385858-90386138(-)$1	1	104	138	42.1495
((.(((((....................))))).	chr7:44516603-44516860(-)$1	1	88	122	35.6760
.(((.........................)))..	chr17:47109884-47110168(+)$1	1	138	172	38.5208
.(((((((...................)))))))	chr3:132413879-132414163(-)$1	1	202	236	34.4878
((((((............................	chr6:35836239-35836534(-)$1	1	207	241	41.6711
..((((...........................)	chr7:91670686-91670997(+)$1	1	165	199	41.1913

#PSSM
f : 0.17	[ : 0.12	g : 0.12	! : 0.07	d : 0.06	i : 0.06	= : 0.06	b : 0.04	e : 0.04	^ : 0.04	h : 0.04	: : 0.03	c : 0.03	" : 0.03	+ : 0.01	( : 0.01	
e : 0.17	f : 0.15	g : 0.14	! : 0.07	d : 0.07	b : 0.06	= : 0.06	c : 0.06	i : 0.04	^ : 0.04	" : 0.03	a : 0.01	: : 0.01	h : 0.01	[ : 0.01	
e : 0.17	f : 0.14	g : 0.14	d : 0.12	[ : 0.10	^ : 0.07	= : 0.06	! : 0.04	i : 0.04	c : 0.04	: : 0.01	b : 0.01	
c : 0.18	e : 0.17	g : 0.14	f : 0.12	d : 0.09	^ : 0.09	[ : 0.06	= : 0.06	i : 0.04	! : 0.01	
c : 0.18	e : 0.17	g : 0.14	d : 0.12	f : 0.12	^ : 0.12	= : 0.06	i : 0.04	b : 0.01	
c : 0.18	e : 0.14	^ : 0.12	g : 0.12	d : 0.10	f : 0.10	= : 0.06	[ : 0.06	i : 0.04	! : 0.01	b : 0.01	
^ : 0.70	c : 0.07	d : 0.04	g : 0.04	b : 0.03	f : 0.03	i : 0.01	! : 0.01	= : 0.01	e : 0.01	
^ : 0.79	c : 0.06	d : 0.04	b : 0.03	i : 0.01	f : 0.01	e : 0.01	g : 0.01	
^ : 0.93	c : 0.04	i : 0.01	
^ : 0.98	c : 0.01	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.90	g : 0.03	b : 0.03	d : 0.01	c : 0.01	
^ : 0.76	c : 0.07	d : 0.03	f : 0.03	g : 0.03	b : 0.03	i : 0.01	e : 0.01	
^ : 0.46	c : 0.17	f : 0.07	e : 0.07	d : 0.06	g : 0.06	] : 0.03	a : 0.01	i : 0.01	= : 0.01	
^ : 0.40	c : 0.17	f : 0.09	e : 0.09	g : 0.07	d : 0.06	b : 0.03	] : 0.01	i : 0.01	= : 0.01	3 : 0.01	
^ : 0.37	f : 0.10	c : 0.10	d : 0.09	e : 0.09	g : 0.07	3 : 0.03	b : 0.03	i : 0.01	2 : 0.01	= : 0.01	: : 0.01	] : 0.01	
^ : 0.34	f : 0.12	e : 0.10	d : 0.09	g : 0.09	] : 0.04	c : 0.04	3 : 0.03	i : 0.01	2 : 0.01	= : 0.01	F : 0.01	: : 0.01	6 : 0.01	9 : 0.01	
^ : 0.29	f : 0.14	d : 0.14	e : 0.10	g : 0.09	b : 0.03	c : 0.03	2 : 0.03	i : 0.01	3 : 0.01	= : 0.01	F : 0.01	: : 0.01	6 : 0.01	] : 0.01	9 : 0.01	

#score	2501.163305624959
#seq	64
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_transcript_m3_run2.txt

#BEAR
cc"""bbqqqqqqqqbb333ccc	chr19:9270985-9271274(+)$1	289	199	222	15.4486
dffffffqqqqqqqqffffff]d	chr12:46589389-46589659(-)$1	270	126	149	13.8306
&&&ddddqqqqqqqqdddd4444	chr17:78262341-78262569(+)$1	228	56	79	13.8066
ddddcccqqqqqqqqccc]dddd	chr22:20093603-20093855(+)$1	252	86	109	15.0062
gggggggqqqqqqqqggggggg:	chr1:11132114-11132326(-)$1	212	151	174	14.2402
gggggbbqqqqqqqqbb22gggg	chr17:27004662-27004890(+)$1	228	22	45	14.7440
d"""cccqqqqqqqqccc22ddd	chr2:24098600-24098875(-)$1	275	135	158	15.7486
e!!ddddqqqqqqqqdddd22ee	chr7:138936598-138936853(+)$1	255	33	56	15.6398
eee!!bbqqqqqqqqbbeeeee:	chr2:159477812-159478040(+)$1	228	97	120	14.2653
eeeeebbqqqqqqqqbb]eeeee	chr17:8108598-8108806(-)$1	208	131	154	14.8659
[dddd[aqqqqqqqqa]dddd]b	chr20:30730793-30731005(+)$1	212	155	178	14.6493
c!!bb[aqqqqqqqqa]bb333c	chr4:1902406-1902662(+)$1	256	157	180	14.6144
f"""cccqqqqqqqqccc22fff	chr22:49988673-49988949(-)$1	276	182	205	15.6526
gggggggqqqqqqqqgggggggc	chr3:47676650-47676893(-)$1	243	180	203	15.0823
e!!ddddqqqqqqqqdddd]eee	chr1:94341189-94341441(-)$1	252	105	128	15.9378
bb[ddddqqqqqqqqdddd]bbc	chr7:91718601-91718868(+)$1	267	96	119	14.7174
==[ddddqqqqqqqqdddd]===	chr12:6710441-6710712(-)$1	271	46	69	16.0610
:bb[cccqqqqqqqqccc]bbee	chr6:52938178-52938418(+)$1	240	98	121	13.7323
eeeee[aqqqqqqqqa]eeeee3	chr10:32311750-32311977(-)$1	227	115	138	14.9402
gg[ddddqqqqqqqqdddd333g	chr10:75003486-75003749(-)$1	263	58	81	15.9860
"""ddddqqqqqqqqddddccc5	chr9:100777631-100777855(+)$1	224	94	117	14.8610
[ffffffqqqqqqqqffffff]a	chr13:103510544-103510820(+)$1	276	59	82	14.0212
!a[ddddqqqqqqqqdddda22d	chr1:202385818-202386139(+)$1	321	281	304	15.2660
dddd[bbqqqqqqqqbb]ddddc	chr17:26912280-26912519(-)$1	239	36	59	14.5760
dd[ddddqqqqqqqqdddd]ddd	chr11:102953398-102953650(-)$1	252	133	156	15.4056
=!!ddddqqqqqqqqdddd333=	chr9:131004414-131004624(+)$1	210	11	34	16.2804
[a"""bbqqqqqqqqbbabb444	chr18:21043830-21044043(+)$1	213	172	195	14.7465
eeee[bbqqqqqqqqbb]eeeee	chr15:29397534-29397768(+)$1	234	157	180	14.9771
eeee[bbqqqqqqqqbb]eeeee	chr3:194167630-194167902(-)$1	272	8	31	14.9771
f[eeeeeqqqqqqqqeeeee]ff	chr8:100146813-100147055(+)$1	242	194	217	14.4622
a[bbcccqqqqqqqqccc]bb]a	chr6:49594132-49594392(-)$1	260	160	183	14.7862
eeeeebbqqqqqqqqbb]eeeee	chr2:3604284-3604534(-)$1	250	159	182	14.8659
dddd[bbqqqqqqqqbb]dddd]	chr11:57100473-57100714(-)$1	241	161	184	14.6470
a"""cccqqqqqqqqccc333a]	chr5:138264870-138265142(+)$1	272	29	52	16.4334
=======qqqqqqqq========	chr10:121691656-121691920(+)$1	264	191	214	15.8320
ee[ddddqqqqqqqqdddd]eee	chr2:233684500-233684796(+)$1	296	245	268	15.6922
ddd[cccqqqqqqqqcccddddg	chr6:47591821-47592025(+)$1	204	14	37	15.1190
=====[aqqqqqqqqa]======	chr19:7687669-7687878(-)$1	209	64	87	15.6531
f"""cccqqqqqqqqccc333ff	chr10:112349550-112349797(+)$1	247	154	177	16.1526
bb[ddddqqqqqqqqdddd]bb:	chr17:42501683-42501956(-)$1	273	18	41	13.8753
iiiiiiiqqqqqqqqiiiiiiii	chr10:32309927-32310146(-)$1	219	27	50	15.2846
gggggggqqqqqqqqgggggggi	chr17:34937786-34938064(+)$1	278	222	245	15.1045
h!!ddddqqqqqqqqdddd]hhh	chr1:154207573-154207821(+)$1	248	219	242	15.1418
ee!!cccqqqqqqqqccceeeee	chr15:68467988-68468205(+)$1	217	109	132	15.9482
$eeeeeaqqqqqqqqa]eeeeeb	chr1:173916445-173916818(-)$1	373	185	208	14.4198
="""cccqqqqqqqqccc=====	chr2:159519398-159519662(+)$1	264	133	156	16.3985
cc[ddddqqqqqqqqdddd]ccc	chr16:19553119-19553456(+)$1	337	148	171	15.6120
dd!!cccqqqqqqqqccc22ddd	chr14:103807198-103807527(+)$1	329	226	249	15.5811
"ffffffqqqqqqqqffffff22	chr1:174188250-174188535(+)$1	285	103	126	13.6084
gggggggqqqqqqqqggggggg]	chrX:64956939-64957184(+)$1	245	11	34	15.1532
dddddddqqqqqqqqddddffff	chr14:61278701-61278947(+)$1	246	123	146	14.6947
""eeeeeqqqqqqqqeeeee22d	chr8:141828307-141828554(-)$1	247	167	190	14.4171
effffffqqqqqqqqffffff]e	chr4:68384950-68385192(-)$1	242	129	152	13.9254
d[eeeeeqqqqqqqqeeeeeddd	chr13:36903399-36903634(-)$1	235	147	170	14.4794
ddbb[bbqqqqqqqqbbbb]ddd	chr1:24981350-24981634(+)$1	284	216	239	13.7579
:bbddddqqqqqqqqdddd333b	chr7:45144915-45145211(-)$1	296	155	178	14.0611
gggggggqqqqqqqqggggggg2	chr12:133212489-133212710(-)$1	221	44	67	14.9211
ee"""bbqqqqqqqqbb22eeee	chr2:232320704-232320936(-)$1	232	173	196	14.9190
fffddddqqqqqqqqdddd]fff	chr7:26247936-26248170(+)$1	234	22	45	14.9373
[bb[cccqqqqqqqqccc]bbff	chr2:96964468-96964685(-)$1	217	147	170	14.6094
b[bbcccqqqqqqqqccc]bb]b	chr1:223943233-223943452(+)$1	219	38	61	14.3516
####cccqqqqqqqqcccdddd3	chr6:34949592-34949861(+)$1	269	33	56	15.7610
iiiiiiiqqqqqqqqiiiiiiii	chr1:23420679-23420938(-)$1	259	100	123	15.2846
ffff[bbqqqqqqqqbbffffff	chr7:100481736-100481947(+)$1	211	13	36	14.0848
cc!!cccqqqqqqqqccc]ccc]	chr22:26860405-26860682(-)$1	277	52	75	15.9081
dd!!cccqqqqqqqqccc22ddd	chr9:123177232-123177470(-)$1	238	209	232	15.5811
eeee[bbqqqqqqqqbbeeeee:	chr1:158644246-158644495(-)$1	249	226	249	14.1247
a[eeeeeqqqqqqqqeeeee]a]	chr19:7709209-7709451(+)$1	242	59	82	14.7431

#otherMatches

#Seq PSSM
GACCCUCUCGGCCCUGAAAAUCC	chr19:9270985-9271274(+)$1	289	199	222	15.4486
ggguuccaugccaacggagccuu	chr12:46589389-46589659(-)$1	270	126	149	13.8306
UGUCACCUUGGCUCUGGUGUUUG	chr17:78262341-78262569(+)$1	228	56	79	13.8066
UGUGUUGUAGUAUUUUAACCACA	chr22:20093603-20093855(+)$1	252	86	109	15.0062
AGCUGUCAAGAAGAAGGCAGCUG	chr1:11132114-11132326(-)$1	212	151	174	14.2402
GAGACACAAGAUAAAGUCCGUCU	chr17:27004662-27004890(+)$1	228	22	45	14.7440
GUUUGAUAUUCAUAGAUCUCCAG	chr2:24098600-24098875(-)$1	275	135	158	15.7486
AACAGGUCUUUUUAAACUUUAUG	chr7:138936598-138936853(+)$1	255	33	56	15.6398
GCUGAAGGACAAACACUGGUUCA	chr2:159477812-159478040(+)$1	228	97	120	14.2653
GCCCCCAGAGAUGAUUGAGGGGC	chr17:8108598-8108806(-)$1	208	131	154	14.8659
GCCUGGGCUUCUCCACGCAGGGU	chr20:30730793-30731005(+)$1	212	155	178	14.6493
CAUGCAGAAGUUUAACGGCCACG	chr4:1902406-1902662(+)$1	256	157	180	14.6144
GCUUGUUCUCACUUAAACUACUG	chr22:49988673-49988949(-)$1	276	182	205	15.6526
AGCUGCUCUUGCCUCAGCGGCUA	chr3:47676650-47676893(-)$1	243	180	203	15.0823
GAAGUUGACAAGCAGCAGCAUAG	chr1:94341189-94341441(-)$1	252	105	128	15.9378
GGGUGUUGAAUAUCAAGCAGCUA	chr7:91718601-91718868(+)$1	267	96	119	14.7174
UGCUGUCUCCAAGAUGAUGAUGG	chr12:6710441-6710712(-)$1	271	46	69	16.0610
AGGCACAACUCCAGAUGUUCCGA	chr6:52938178-52938418(+)$1	240	98	121	13.7323
CAGUUAGAAAGCACACAAACUGA	chr10:32311750-32311977(-)$1	227	115	138	14.9402
UCAGGCUCAGGAAGAGGCCAAAG	chr10:75003486-75003749(-)$1	263	58	81	15.9860
CCUGCAGAAACAGAACUGUUCAG	chr9:100777631-100777855(+)$1	224	94	117	14.8610
GCUGUGAUUUUAUCUUUACAGGA	chr13:103510544-103510820(+)$1	276	59	82	14.0212
UUCUCCUCUAUUCUUAGGAAUUU	chr1:202385818-202386139(+)$1	321	281	304	15.2660
CUUUGCUGUAUCCAAAGGGAAGG	chr17:26912280-26912519(-)$1	239	36	59	14.5760
UUUACCAAGGAAGAAUGGUUAAA	chr11:102953398-102953650(-)$1	252	133	156	15.4056
UUUCGAAUGCCUCUCUUUGCCUA	chr9:131004414-131004624(+)$1	210	11	34	16.2804
ACAGAUGGAAUAUGACAGAGAAU	chr18:21043830-21044043(+)$1	213	172	195	14.7465
CAUCAUCAACACCCAGGAGAUGU	chr15:29397534-29397768(+)$1	234	157	180	14.9771
AUCCGUAAAUAAUACUGGGGAUU	chr3:194167630-194167902(-)$1	272	8	31	14.9771
uuauaaauaCCUGUUUUUAUCAG	chr8:100146813-100147055(+)$1	242	194	217	14.4622
uacccugaaaagccacagaggca	chr6:49594132-49594392(-)$1	260	160	183	14.7862
gucaccucucauaucagugugac	chr2:3604284-3604534(-)$1	250	159	182	14.8659
CACCACAGGCAAGAAUGAGGUGA	chr11:57100473-57100714(-)$1	241	161	184	14.6470
AUGUGUCUGACCUGUGAUCUUUG	chr5:138264870-138265142(+)$1	272	29	52	16.4334
GGCAUUUUCUAAUACAAAUGUUU	chr10:121691656-121691920(+)$1	264	191	214	15.8320
UGAUUUAGAAAAUAUUAGGACAU	chr2:233684500-233684796(+)$1	296	245	268	15.6922
AUGAUCACAUCUUAAUGACAUAG	chr6:47591821-47592025(+)$1	204	14	37	15.1190
CAGGGUCUCAGCCUCGCCUCUGC	chr19:7687669-7687878(-)$1	209	64	87	15.6531
GAUCUUGAAAAGAAGCAACAACU	chr10:112349550-112349797(+)$1	247	154	177	16.1526
GACUGUUUUCUCUAUAACAUUCA	chr17:42501683-42501956(-)$1	273	18	41	13.8753
UAAUCAGUAUUAAUUUUGAUUAG	chr10:32309927-32310146(-)$1	219	27	50	15.2846
GCUUGUAGAUAGAAGUACAggcc	chr17:34937786-34938064(+)$1	278	222	245	15.1045
AUUGGGGGCAGGUUACUCUUUAU	chr1:154207573-154207821(+)$1	248	219	242	15.1418
AGUCGAUGGUGAGUAGUUCUUCA	chr15:68467988-68468205(+)$1	217	109	132	15.9482
GGAGACCGACCAACAGUGUCUCG	chr1:173916445-173916818(-)$1	373	185	208	14.4198
AAAGACUCUGAGCCAAGUUGCUG	chr2:159519398-159519662(+)$1	264	133	156	16.3985
UGAGUUGGACAUUAACAAUGCAG	chr16:19553119-19553456(+)$1	337	148	171	15.6120
UGCAAAUUUUCCUCCAUUAUCAG	chr14:103807198-103807527(+)$1	329	226	249	15.5811
UGAACAGUGAAGAAUUUGUUUUG	chr1:174188250-174188535(+)$1	285	103	126	13.6084
CUUGGGGUGGAUCAUUUCCAGGA	chrX:64956939-64957184(+)$1	245	11	34	15.1532
CAGGCUUUUUUAGAUGAGCUGGU	chr14:61278701-61278947(+)$1	246	123	146	14.6947
AAGGGCUGCAAUGUAAGUCUGCU	chr8:141828307-141828554(-)$1	247	167	190	14.4171
GGAUGCAAAAACAUCUGUAUCAC	chr4:68384950-68385192(-)$1	242	129	152	13.9254
AGUAAUAAGUGUGUGUGUUGUCU	chr13:36903399-36903634(-)$1	235	147	170	14.4794
ACCGUACAAGAAAAAGUCGUGUU	chr1:24981350-24981634(+)$1	284	216	239	13.7579
ACCGCCUGGAAGACAAGGUACUG	chr7:45144915-45145211(-)$1	296	155	178	14.0611
AAGUUGAGAACAAGGUCGAUUUC	chr12:133212489-133212710(-)$1	221	44	67	14.9211
GGGCAAGGAUAGUUACUGACCGG	chr2:232320704-232320936(-)$1	232	173	196	14.9190
GAUGAAUCAUAUUUAAUUCAAUC	chr7:26247936-26248170(+)$1	234	22	45	14.9373
ACAAUAGUUGUAUAUUUAGUGUA	chr2:96964468-96964685(-)$1	217	147	170	14.6094
UGGGGCUCAUUCAGAAGCACCGA	chr1:223943233-223943452(+)$1	219	38	61	14.3516
AAAAUGCUCCUUAAUGCACACCC	chr6:34949592-34949861(+)$1	269	33	56	15.7610
GGUUGCCAAGAGAAAGGUAACCA	chr1:23420679-23420938(-)$1	259	100	123	15.2846
CCCUGCAAAACCGACUGAGGGUC	chr7:100481736-100481947(+)$1	211	13	36	14.0848
GAAGGAGAACGGAUGCUUGUCUG	chr22:26860405-26860682(-)$1	277	52	75	15.9081
CAUUUGCCUGAGUAAGCAUCUGU	chr9:123177232-123177470(-)$1	238	209	232	15.5811
AUGCCAGGUUUCUUGCUGCAUUU	chr1:158644246-158644495(-)$1	249	226	249	14.1247
UGACCUGUGUGUAGGUGGGUGGG	chr19:7709209-7709451(+)$1	242	59	82	14.7431

#DB
((...((........))...)))	chr19:9270985-9271274(+)$1	1	199	222	15.4486
(((((((........)))))).)	chr12:46589389-46589659(-)$1	1	126	149	13.8306
...((((........))))....	chr17:78262341-78262569(+)$1	1	56	79	13.8066
(((((((........))).))))	chr22:20093603-20093855(+)$1	1	86	109	15.0062
(((((((........))))))).	chr1:11132114-11132326(-)$1	1	151	174	14.2402
(((((((........))..))))	chr17:27004662-27004890(+)$1	1	22	45	14.7440
(...(((........)))..)))	chr2:24098600-24098875(-)$1	1	135	158	15.7486
(..((((........))))..))	chr7:138936598-138936853(+)$1	1	33	56	15.6398
(((..((........))))))).	chr2:159477812-159478040(+)$1	1	97	120	14.2653
(((((((........)).)))))	chr17:8108598-8108806(-)$1	1	131	154	14.8659
.((((.(........).)))).)	chr20:30730793-30731005(+)$1	1	155	178	14.6493
(..((.(........).))...)	chr4:1902406-1902662(+)$1	1	157	180	14.6144
(...(((........)))..)))	chr22:49988673-49988949(-)$1	1	182	205	15.6526
(((((((........)))))))(	chr3:47676650-47676893(-)$1	1	180	203	15.0823
(..((((........)))).)))	chr1:94341189-94341441(-)$1	1	105	128	15.9378
((.((((........)))).))(	chr7:91718601-91718868(+)$1	1	96	119	14.7174
((.((((........)))).)))	chr12:6710441-6710712(-)$1	1	46	69	16.0610
.((.(((........))).))((	chr6:52938178-52938418(+)$1	1	98	121	13.7323
(((((.(........).))))).	chr10:32311750-32311977(-)$1	1	115	138	14.9402
((.((((........))))...)	chr10:75003486-75003749(-)$1	1	58	81	15.9860
...((((........))))))).	chr9:100777631-100777855(+)$1	1	94	117	14.8610
.((((((........)))))).)	chr13:103510544-103510820(+)$1	1	59	82	14.0212
.(.((((........)))))..)	chr1:202385818-202386139(+)$1	1	281	304	15.2660
((((.((........)).)))))	chr17:26912280-26912519(-)$1	1	36	59	14.5760
((.((((........)))).)))	chr11:102953398-102953650(-)$1	1	133	156	15.4056
(..((((........))))...)	chr9:131004414-131004624(+)$1	1	11	34	16.2804
.(...((........)))))...	chr18:21043830-21044043(+)$1	1	172	195	14.7465
((((.((........)).)))))	chr15:29397534-29397768(+)$1	1	157	180	14.9771
((((.((........)).)))))	chr3:194167630-194167902(-)$1	1	8	31	14.9771
(.(((((........))))).))	chr8:100146813-100147055(+)$1	1	194	217	14.4622
(.(((((........))).)).)	chr6:49594132-49594392(-)$1	1	160	183	14.7862
(((((((........)).)))))	chr2:3604284-3604534(-)$1	1	159	182	14.8659
((((.((........)).)))).	chr11:57100473-57100714(-)$1	1	161	184	14.6470
(...(((........)))...).	chr5:138264870-138265142(+)$1	1	29	52	16.4334
(((((((........))))))))	chr10:121691656-121691920(+)$1	1	191	214	15.8320
((.((((........)))).)))	chr2:233684500-233684796(+)$1	1	245	268	15.6922
(((.(((........)))))))(	chr6:47591821-47592025(+)$1	1	14	37	15.1190
(((((.(........).))))))	chr19:7687669-7687878(-)$1	1	64	87	15.6531
(...(((........)))...))	chr10:112349550-112349797(+)$1	1	154	177	16.1526
((.((((........)))).)).	chr17:42501683-42501956(-)$1	1	18	41	13.8753
(((((((........))))))))	chr10:32309927-32310146(-)$1	1	27	50	15.2846
(((((((........)))))))(	chr17:34937786-34938064(+)$1	1	222	245	15.1045
(..((((........)))).)))	chr1:154207573-154207821(+)$1	1	219	242	15.1418
((..(((........))))))))	chr15:68467988-68468205(+)$1	1	109	132	15.9482
.((((((........).))))))	chr1:173916445-173916818(-)$1	1	185	208	14.4198
(...(((........))))))))	chr2:159519398-159519662(+)$1	1	133	156	16.3985
((.((((........)))).)))	chr16:19553119-19553456(+)$1	1	148	171	15.6120
((..(((........)))..)))	chr14:103807198-103807527(+)$1	1	226	249	15.5811
.((((((........))))))..	chr1:174188250-174188535(+)$1	1	103	126	13.6084
(((((((........))))))).	chrX:64956939-64957184(+)$1	1	11	34	15.1532
)))((((........))))((((	chr14:61278701-61278947(+)$1	1	123	146	14.6947
..(((((........)))))..)	chr8:141828307-141828554(-)$1	1	167	190	14.4171
(((((((........)))))).)	chr4:68384950-68385192(-)$1	1	129	152	13.9254
(.(((((........))))))))	chr13:36903399-36903634(-)$1	1	147	170	14.4794
((((.((........)))).)))	chr1:24981350-24981634(+)$1	1	216	239	13.7579
.((((((........))))...)	chr7:45144915-45145211(-)$1	1	155	178	14.0611
(((((((........))))))).	chr12:133212489-133212710(-)$1	1	44	67	14.9211
((...((........))..))))	chr2:232320704-232320936(-)$1	1	173	196	14.9190
(((((((........)))).)))	chr7:26247936-26248170(+)$1	1	22	45	14.9373
.((.(((........))).))))	chr2:96964468-96964685(-)$1	1	147	170	14.6094
(.(((((........))).)).)	chr1:223943233-223943452(+)$1	1	38	61	14.3516
....(((........))))))).	chr6:34949592-34949861(+)$1	1	33	56	15.7610
(((((((........))))))))	chr1:23420679-23420938(-)$1	1	100	123	15.2846
((((.((........))))))))	chr7:100481736-100481947(+)$1	1	13	36	14.0848
((..(((........))).))).	chr22:26860405-26860682(-)$1	1	52	75	15.9081
((..(((........)))..)))	chr9:123177232-123177470(-)$1	1	209	232	15.5811
((((.((........))))))).	chr1:158644246-158644495(-)$1	1	226	249	14.1247
(.(((((........))))).).	chr19:7709209-7709451(+)$1	1	59	82	14.7431

#PSSM
e : 0.19	d : 0.17	g : 0.10	f : 0.07	= : 0.07	c : 0.05	[ : 0.05	b : 0.04	" : 0.04	a : 0.04	: : 0.02	i : 0.02	& : 0.01	! : 0.01	h : 0.01	$ : 0.01	# : 0.01	
e : 0.16	d : 0.14	g : 0.10	" : 0.10	f : 0.08	! : 0.07	b : 0.07	[ : 0.07	c : 0.04	= : 0.04	a : 0.02	i : 0.02	& : 0.01	# : 0.01	
e : 0.17	" : 0.13	! : 0.13	[ : 0.11	f : 0.08	d : 0.08	g : 0.08	b : 0.08	= : 0.02	i : 0.02	& : 0.01	# : 0.01	
d : 0.30	e : 0.16	" : 0.11	g : 0.08	f : 0.07	! : 0.07	b : 0.05	[ : 0.04	= : 0.02	i : 0.02	# : 0.01	
d : 0.26	c : 0.23	e : 0.11	[ : 0.10	g : 0.08	f : 0.05	" : 0.04	= : 0.02	i : 0.02	! : 0.01	b : 0.01	
d : 0.25	c : 0.23	b : 0.20	g : 0.07	e : 0.07	f : 0.05	[ : 0.05	i : 0.02	= : 0.01	
d : 0.25	c : 0.23	b : 0.20	g : 0.07	a : 0.07	f : 0.05	e : 0.05	i : 0.02	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.25	c : 0.23	b : 0.20	g : 0.07	a : 0.07	f : 0.05	e : 0.05	i : 0.02	= : 0.01	
d : 0.25	c : 0.23	b : 0.20	g : 0.07	] : 0.07	f : 0.05	e : 0.05	i : 0.02	= : 0.01	
d : 0.26	c : 0.23	e : 0.11	] : 0.08	f : 0.07	g : 0.07	2 : 0.02	b : 0.02	= : 0.02	i : 0.02	3 : 0.01	a : 0.01	
d : 0.32	e : 0.19	] : 0.08	2 : 0.08	f : 0.07	g : 0.07	3 : 0.04	b : 0.04	= : 0.04	i : 0.02	
e : 0.20	] : 0.14	3 : 0.10	f : 0.08	d : 0.08	g : 0.08	2 : 0.07	b : 0.07	= : 0.04	c : 0.02	i : 0.02	4 : 0.01	a : 0.01	
d : 0.17	e : 0.17	f : 0.11	g : 0.08	3 : 0.08	b : 0.08	c : 0.05	= : 0.05	2 : 0.04	4 : 0.02	] : 0.02	i : 0.02	h : 0.01	
e : 0.20	d : 0.16	f : 0.10	] : 0.08	g : 0.08	c : 0.05	3 : 0.05	= : 0.05	2 : 0.04	4 : 0.02	b : 0.02	a : 0.02	i : 0.02	h : 0.01	
e : 0.16	d : 0.14	f : 0.10	c : 0.08	= : 0.07	] : 0.07	: : 0.05	b : 0.05	g : 0.04	i : 0.04	4 : 0.02	3 : 0.02	a : 0.02	2 : 0.02	5 : 0.01	h : 0.01	

#score	1018.4160693027957
#seq	68
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_transcript_m1_run2.txt

#BEAR
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:142455384-142455639(+)$1	255	95	135	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:148052736-148053019(+)$1	283	80	120	64.0577
""bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:36198784-36199078(+)$1	294	123	163	60.1895
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr10:77405524-77405823(+)$1	299	73	113	59.7956
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:180855136-180855440(-)$1	304	123	163	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:2940831-2941086(+)$1	255	72	112	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:122369885-122370160(-)$1	275	99	139	64.0577
f^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:117574663-117574940(-)$1	277	128	168	62.9337
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrY:14496251-14496523(-)$1	272	38	78	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:45764828-45765139(-)$1	311	34	74	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:69479835-69480125(-)$1	290	63	103	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:42511484-42511797(-)$1	313	186	226	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr5:109187888-109188139(+)$1	251	83	123	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd4	chr16:72983451-72983701(-)$1	250	77	117	57.1308
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:34831269-34831543(+)$1	274	64	104	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:65200901-65201164(+)$1	263	67	107	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:124924236-124924469(-)$1	233	169	209	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:241469232-241469501(-)$1	269	23	63	64.0577
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:39653904-39654160(-)$1	256	97	137	55.9342
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:2110889-2111161(-)$1	272	101	141	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:19995930-19996226(+)$1	296	194	234	64.0577
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:8664487-8664759(-)$1	272	153	193	57.8989
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:19447699-19447995(-)$1	296	57	97	64.0577
b^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:7785173-7785449(-)$1	276	30	70	62.9102
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]	chr11:34317777-34318076(-)$1	299	181	221	54.5813
==^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^====	chr1:175939971-175940266(-)$1	295	12	52	56.5764
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:147644121-147644390(+)$1	269	97	137	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:90059293-90059571(-)$1	278	220	260	64.0577
!!bb!!bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:47131125-47131453(-)$1	328	72	112	54.7175
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr1:183021235-183021520(+)$1	285	95	135	53.6372
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ee	chr4:113164351-113164621(+)$1	270	13	53	55.1197
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:4306806-4307105(+)$1	299	82	122	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:51395093-51395394(+)$1	301	84	124	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:127948861-127949136(+)$1	275	57	97	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:61538490-61538708(-)$1	218	39	79	64.0577
%%%%bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr9:107633852-107634113(-)$1	261	74	114	57.5193
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:75262139-75262446(+)$1	307	119	159	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr13:53046010-53046358(+)$1	348	86	126	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:167965361-167965649(+)$1	288	121	161	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:72182662-72182897(+)$1	235	62	102	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:68697886-68698214(+)$1	328	81	121	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr4:1898428-1898711(+)$1	283	121	161	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:31644322-31644605(-)$1	283	88	128	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:101563115-101563377(+)$1	262	71	111	64.0577
f^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr8:109233202-109233412(-)$1	210	36	76	62.9337
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr15:56525711-56525930(-)$1	219	66	106	56.0272
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr20:43559621-43559873(+)$1	252	15	55	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:35840640-35840906(+)$1	266	159	199	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:56592279-56592587(+)$1	308	140	180	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr5:114858505-114858772(-)$1	267	65	105	64.0577
!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:113945510-113945821(-)$1	311	111	151	56.7552
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:81518061-81518325(-)$1	264	16	56	64.0577
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr13:76422473-76422734(+)$1	261	123	163	59.7956
fff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:47071271-47071533(+)$1	262	37	77	60.4634
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr13:52731257-52731527(-)$1	270	25	65	53.0735
####ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^cc	chr14:25460150-25460454(-)$1	304	32	72	54.6210
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:143584337-143584592(+)$1	255	50	90	64.0577
ddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:53384013-53384282(+)$1	269	80	120	60.4701
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr8:71260923-71261264(-)$1	341	129	169	57.6751
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc::	chr5:73001089-73001367(+)$1	278	0	40	53.2261
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:469450-469672(-)$1	222	81	121	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:108993860-108994118(+)$1	258	43	83	64.0577
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:3369165-3369444(+)$1	279	27	67	64.0577

#otherMatches

#Seq PSSM
uuucuuuuucuuucuuugucucucuuacucuccuucuguc	chr3:142455384-142455639(+)$1	255	95	135	64.0577
CAACccucccucccucccucccuccuuuccuuccuuccuu	chr6:148052736-148053019(+)$1	283	80	120	64.0577
UUGCUUUCUCUUUCCCAUAUUCCUUUUCUUUUUCUCUUGU	chr6:36198784-36199078(+)$1	294	123	163	60.1895
CACUUGCAUuuauucuuucccuucuucucauccuucucug	chr10:77405524-77405823(+)$1	299	73	113	59.7956
uccuucuucuuucucucucucucucucucucucucucucu	chr2:180855136-180855440(-)$1	304	123	163	64.0577
UCCUUCUCUCUCUUCUUUCUUUUCuuucuuuuucuuuucu	chr12:2940831-2941086(+)$1	255	72	112	64.0577
UUUUCUAAUuccuccucuuccuuccacuuuuccuccuccu	chr2:122369885-122370160(-)$1	275	99	139	64.0577
AUACUUUCUCCUUCUUCCUCUCAUUUUCUCCUUUCUUCGU	chr11:117574663-117574940(-)$1	277	128	168	62.9337
ucuuuaucuaucucucuaucaucuaucuauccauUAUUCU	chrY:14496251-14496523(-)$1	272	38	78	64.0577
CAAAAuucuuucuuuuucuuucuuucuuuuucuuucucuu	chr7:45764828-45765139(-)$1	311	34	74	64.0577
UCUCUAUGCCCAcugucccccaccuucucucccuuccucu	chr11:69479835-69480125(-)$1	290	63	103	64.0577
uuuucaccaaaccacuuuauucaaggccaccaaacacuuc	chr17:42511484-42511797(-)$1	313	186	226	64.0577
UUCUCUCCUCCUUCCUCUUUGUCUUUUUUACUCCACCCUU	chr5:109187888-109188139(+)$1	251	83	123	64.0577
ucuuucucuuccuuauacuuuuucuucuucuuccugggcu	chr16:72983451-72983701(-)$1	250	77	117	57.1308
CCCUCUCCCUuuuucuuuucuuuucuuuucuuuucuuuuc	chr19:34831269-34831543(+)$1	274	64	104	64.0577
UUUCUUCUCUCUAGCCCUCUuucuuuucucuucucuucuc	chr14:65200901-65201164(+)$1	263	67	107	64.0577
Ccucucucucucucucugauccucucuuucucaucucucu	chr12:124924236-124924469(-)$1	233	169	209	64.0577
uucuuccucugucccccucuuucuccuucccuuugcuccu	chr2:241469232-241469501(-)$1	269	23	63	64.0577
cuuugauaccuuucuuccccuaucucuuucuuguuucucu	chr2:39653904-39654160(-)$1	256	97	137	55.9342
UGAAUAACCCAUACUUUCUACUCCUUUUCUAACCCUUUAA	chr6:2110889-2111161(-)$1	272	101	141	64.0577
cucuuccuccuucuccuccuucuucuucuccuucuccucc	chr10:19995930-19996226(+)$1	296	194	234	64.0577
CUGGUACCUCCUCUUCCCCCACAACAAAACAAAACUGAAA	chr1:8664487-8664759(-)$1	272	153	193	57.8989
cucucucucucucucucucucucucucucucucucucucu	chrX:19447699-19447995(-)$1	296	57	97	64.0577
CUAAUUUGCCUUAuucucccucucauccauccucccuuuu	chr17:7785173-7785449(-)$1	276	30	70	62.9102
cucucccacccuccuccuugucucccuccccuccuuagau	chr11:34317777-34318076(-)$1	299	181	221	54.5813
UGCAUCUCUUUAUUUUCCAUCUAAUUAUUCAUCAAAUAGC	chr1:175939971-175940266(-)$1	295	12	52	56.5764
UACAUUCACUGUUUCUUCUUUUCUUCCUCUACCCUACCUC	chr6:147644121-147644390(+)$1	269	97	137	64.0577
ucuuccucacuccuuccuuccuACCUGUUCAUCCCAUGCC	chr14:90059293-90059571(-)$1	278	220	260	64.0577
CUGUCAUGAUUUCUUAUUUUCCUUUGUUCACACUUUUCCC	chr3:47131125-47131453(-)$1	328	72	112	54.7175
UUGUGUUCUCAUCCCUUUUUCUUUCUGUUCUGUCUUUCAC	chr1:183021235-183021520(+)$1	285	95	135	53.6372
CCAGCUUCUCACAUCACUUUGUCCUUUAUCGUUUCACUGC	chr4:113164351-113164621(+)$1	270	13	53	55.1197
ccuccuucccucccuuccuuccucucuuuccuccuuccuu	chr7:4306806-4307105(+)$1	299	82	122	64.0577
ucuccccucuccuccccuucucuucccucagcuucccucc	chr15:51395093-51395394(+)$1	301	84	124	64.0577
CCCGCUUUCUGUCAUUCUUUCGUUUUUUCAUUCAUUCAUU	chr3:127948861-127949136(+)$1	275	57	97	64.0577
CCUUUCAAUUCAAAUuuucucuuucucuuucucucuuucu	chr2:61538490-61538708(-)$1	218	39	79	64.0577
ucuucauacuuccuaucucuuaccuucuuuucacuccuuu	chr9:107633852-107634113(-)$1	261	74	114	57.5193
AAAAUCCUAUCAAUUCUACCUUAUUUUACAUCUCUCACUU	chr14:75262139-75262446(+)$1	307	119	159	64.0577
ucuuucccucuccccuacaucccugaauuucucuuucuuu	chr13:53046010-53046358(+)$1	348	86	126	64.0577
uucccuuauuuuucuauccuuuuuucuuuuuaucaucucu	chr1:167965361-167965649(+)$1	288	121	161	64.0577
accucccucacuuucuuccucucuccuuccuuuccuuccu	chr10:72182662-72182897(+)$1	235	62	102	64.0577
CCACCUUUUUCUUCUCUCUUUGCCUCUGUUCCUAAUUUCU	chr14:68697886-68698214(+)$1	328	81	121	64.0577
uuccuuucuucucuucucuuuucuuuucuuucuCCUUGCC	chr4:1898428-1898711(+)$1	283	121	161	64.0577
UCUACAuuuccuuuccuuucccuuucccuuccucccuuuc	chr12:31644322-31644605(-)$1	283	88	128	64.0577
Uucccuccuucccuucucccuuuccuccuucccuuccucc	chr10:101563115-101563377(+)$1	262	71	111	64.0577
Guucuuuucuuuucuuucuuuccuuuucuuucuuuuccuu	chr8:109233202-109233412(-)$1	210	36	76	62.9337
uucauuucauuacucauuucaGUUACUCUAAUUCUUUUGA	chr15:56525711-56525930(-)$1	219	66	106	56.0272
UUUUccuuccucccuuccuucccuucccucccuucccucc	chr20:43559621-43559873(+)$1	252	15	55	64.0577
UCUUCAACCAUUGUCAAUCUUGUUUUUCCUUAUAUUCCAU	chr1:35840640-35840906(+)$1	266	159	199	64.0577
uuuguuuccuuccuuccuuauuuccuuuaguuuccuuccu	chrX:56592279-56592587(+)$1	308	140	180	64.0577
UUucucuuucuuccuuucuuucucucacucuuucuuucuc	chr5:114858505-114858772(-)$1	267	65	105	64.0577
cucccuaaucuauucucaccucauauuucucauuuucuuc	chr10:113945510-113945821(-)$1	311	111	151	56.7552
UCUuucucucuucuguccuuccgucccucuucccuuccuu	chr10:81518061-81518325(-)$1	264	16	56	64.0577
aucuaucuaacuaucucacauucucuuuauccacucauug	chr13:76422473-76422734(+)$1	261	123	163	59.7956
UAUUUCUUCCAUCUUUCUCCUCCCACCUGCCUCGCCCUCU	chrX:47071271-47071533(+)$1	262	37	77	60.4634
gucaacuguucuuacaucuuuccuucccauuuuuucugac	chr13:52731257-52731527(-)$1	270	25	65	53.0735
UUCUGGAUGCUUCCUUUucuccucucuccuccuccuccuc	chr14:25460150-25460454(-)$1	304	32	72	54.6210
uuucuauauccuaguccuuuauuuguuuuuuuuuuucuuu	chr6:143584337-143584592(+)$1	255	50	90	64.0577
aucucuuuuuucuucuucuuucuuucucccccucccuuuu	chr17:53384013-53384282(+)$1	269	80	120	60.4701
agcucccaaauuuauaaccuuaaccugaccuuucuucuaa	chr8:71260923-71261264(-)$1	341	129	169	57.6751
GGCUUAAAAAACACUUUAAAGAUACACACUUCACUGCCAC	chr5:73001089-73001367(+)$1	278	0	40	53.2261
cuccuuagucaucuuuguuaucucuuuucucuucccuuua	chr12:469450-469672(-)$1	222	81	121	64.0577
UACGucuccucucucucccucccucucccucucccugucu	chr6:108993860-108994118(+)$1	258	43	83	64.0577
ugucucugucuguuucucugucucugucucucugcccccu	chr19:3369165-3369444(+)$1	279	27	67	64.0577

#DB
........................................	chr3:142455384-142455639(+)$1	1	95	135	64.0577
........................................	chr6:148052736-148053019(+)$1	1	80	120	64.0577
..((....................................	chr6:36198784-36199078(+)$1	1	123	163	60.1895
(((....................................)	chr10:77405524-77405823(+)$1	1	73	113	59.7956
........................................	chr2:180855136-180855440(-)$1	1	123	163	64.0577
........................................	chr12:2940831-2941086(+)$1	1	72	112	64.0577
........................................	chr2:122369885-122370160(-)$1	1	99	139	64.0577
(.......................................	chr11:117574663-117574940(-)$1	1	128	168	62.9337
........................................	chrY:14496251-14496523(-)$1	1	38	78	64.0577
........................................	chr7:45764828-45765139(-)$1	1	34	74	64.0577
........................................	chr11:69479835-69480125(-)$1	1	63	103	64.0577
........................................	chr17:42511484-42511797(-)$1	1	186	226	64.0577
........................................	chr5:109187888-109188139(+)$1	1	83	123	64.0577
...................................)))).	chr16:72983451-72983701(-)$1	1	77	117	57.1308
........................................	chr19:34831269-34831543(+)$1	1	64	104	64.0577
........................................	chr14:65200901-65201164(+)$1	1	67	107	64.0577
........................................	chr12:124924236-124924469(-)$1	1	169	209	64.0577
........................................	chr2:241469232-241469501(-)$1	1	23	63	64.0577
((((((..................................	chr2:39653904-39654160(-)$1	1	97	137	55.9342
........................................	chr6:2110889-2111161(-)$1	1	101	141	64.0577
........................................	chr10:19995930-19996226(+)$1	1	194	234	64.0577
(((((...................................	chr1:8664487-8664759(-)$1	1	153	193	57.8989
........................................	chrX:19447699-19447995(-)$1	1	57	97	64.0577
(.......................................	chr17:7785173-7785449(-)$1	1	30	70	62.9102
.(((................................))).	chr11:34317777-34318076(-)$1	1	181	221	54.5813
((..................................))))	chr1:175939971-175940266(-)$1	1	12	52	56.5764
........................................	chr6:147644121-147644390(+)$1	1	97	137	64.0577
........................................	chr14:90059293-90059571(-)$1	1	220	260	64.0577
..((..((................................	chr3:47131125-47131453(-)$1	1	72	112	54.7175
(((((................................)))	chr1:183021235-183021520(+)$1	1	95	135	53.6372
(((((.................................))	chr4:113164351-113164621(+)$1	1	13	53	55.1197
........................................	chr7:4306806-4307105(+)$1	1	82	122	64.0577
........................................	chr15:51395093-51395394(+)$1	1	84	124	64.0577
........................................	chr3:127948861-127949136(+)$1	1	57	97	64.0577
........................................	chr2:61538490-61538708(-)$1	1	39	79	64.0577
....((..................................	chr9:107633852-107634113(-)$1	1	74	114	57.5193
........................................	chr14:75262139-75262446(+)$1	1	119	159	64.0577
........................................	chr13:53046010-53046358(+)$1	1	86	126	64.0577
........................................	chr1:167965361-167965649(+)$1	1	121	161	64.0577
........................................	chr10:72182662-72182897(+)$1	1	62	102	64.0577
........................................	chr14:68697886-68698214(+)$1	1	81	121	64.0577
........................................	chr4:1898428-1898711(+)$1	1	121	161	64.0577
........................................	chr12:31644322-31644605(-)$1	1	88	128	64.0577
........................................	chr10:101563115-101563377(+)$1	1	71	111	64.0577
(.......................................	chr8:109233202-109233412(-)$1	1	36	76	62.9337
.(((.................................)))	chr15:56525711-56525930(-)$1	1	66	106	56.0272
........................................	chr20:43559621-43559873(+)$1	1	15	55	64.0577
........................................	chr1:35840640-35840906(+)$1	1	159	199	64.0577
........................................	chrX:56592279-56592587(+)$1	1	140	180	64.0577
........................................	chr5:114858505-114858772(-)$1	1	65	105	64.0577
.(((((..................................	chr10:113945510-113945821(-)$1	1	111	151	56.7552
........................................	chr10:81518061-81518325(-)$1	1	16	56	64.0577
(((....................................)	chr13:76422473-76422734(+)$1	1	123	163	59.7956
(((.....................................	chrX:47071271-47071533(+)$1	1	37	77	60.4634
((((................................))))	chr13:52731257-52731527(-)$1	1	25	65	53.0735
....(((...............................))	chr14:25460150-25460454(-)$1	1	32	72	54.6210
........................................	chr6:143584337-143584592(+)$1	1	50	90	64.0577
(((.....................................	chr17:53384013-53384282(+)$1	1	80	120	60.4701
((((...................................)	chr8:71260923-71261264(-)$1	1	129	169	57.6751
(((................................)))..	chr5:73001089-73001367(+)$1	1	0	40	53.2261
........................................	chr12:469450-469672(-)$1	1	81	121	64.0577
........................................	chr6:108993860-108994118(+)$1	1	43	83	64.0577
........................................	chr19:3369165-3369444(+)$1	1	27	67	64.0577

#PSSM
^ : 0.65	f : 0.06	c : 0.04	e : 0.04	d : 0.04	[ : 0.03	! : 0.03	" : 0.01	b : 0.01	= : 0.01	% : 0.01	# : 0.01	
^ : 0.69	c : 0.07	e : 0.06	d : 0.04	f : 0.03	" : 0.01	= : 0.01	! : 0.01	% : 0.01	# : 0.01	
^ : 0.71	c : 0.07	e : 0.06	d : 0.04	b : 0.03	f : 0.03	% : 0.01	# : 0.01	
^ : 0.79	e : 0.06	b : 0.03	c : 0.03	d : 0.03	f : 0.01	% : 0.01	# : 0.01	
^ : 0.87	e : 0.06	f : 0.01	! : 0.01	b : 0.01	c : 0.01	
^ : 0.92	f : 0.01	! : 0.01	b : 0.01	e : 0.01	c : 0.01	
^ : 0.96	b : 0.01	c : 0.01	
^ : 0.98	b : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.96	d : 0.01	c : 0.01	
^ : 0.92	d : 0.03	c : 0.03	= : 0.01	
^ : 0.88	c : 0.04	d : 0.03	= : 0.01	e : 0.01	
^ : 0.85	c : 0.04	d : 0.03	e : 0.03	= : 0.01	: : 0.01	
^ : 0.80	c : 0.06	e : 0.03	d : 0.03	4 : 0.01	] : 0.01	= : 0.01	: : 0.01	

#score	3886.2946605511966
#seq	63
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_UTR_m3_run1.txt

#BEAR
gggggggqqqqqqqqgggggg	chr1:224575561-224575819(-)$1	258	147	168	15.8211
gggggggqqqqqqqqgggggg	chr17:55761858-55762101(+)$1	243	164	185	15.8211
cc!!cccqqqqqqqqccc333	chr6:7289209-7289482(-)$1	273	98	119	15.4509
hhhhhhhqqqqqqqqhhhhhh	chr7:131180340-131180588(+)$1	248	182	203	14.2778
hhhhcccqqqqqqqqccc666	chr15:69071975-69072235(-)$1	260	207	228	13.2068
gggggggqqqqqqqqgggggg	chr6:163988574-163988836(+)$1	262	6	27	15.8211
bffffffqqqqqqqqffffff	chr16:2820991-2821238(+)$1	247	166	187	13.4928
gggggggqqqqqqqqgggggg	chrX:64960716-64960998(+)$1	282	89	110	15.8211
c!!ddddqqqqqqqqdddd44	chrX:70519976-70520197(+)$1	221	175	196	14.2614
eeee[bbqqqqqqqqbb]eee	chr15:38776738-38777014(+)$1	276	192	213	14.0189
hhhhhhhqqqqqqqqhhhhhh	chr7:75956785-75957011(-)$1	226	74	95	14.2778
gggggggqqqqqqqqgggggg	chr17:41166636-41166892(-)$1	256	12	33	15.8211
!eeeeeaqqqqqqqqa]eeee	chr12:46753754-46754021(-)$1	267	233	254	14.3753
iiiiiiiqqqqqqqqiiiiii	chr9:111781302-111781562(-)$1	260	130	151	16.0454
hhhhhhhqqqqqqqqhhhhhh	chr7:75956725-75956974(-)$1	249	37	58	14.2778
"eeeeeaqqqqqqqqa]eeee	chr17:40463424-40463697(+)$1	273	125	146	14.2630
cc[ddddqqqqqqqqdddd22	chr5:126889444-126889738(+)$1	294	93	114	14.0055
ee!!cccqqqqqqqqccc22e	chr1:15756424-15756670(+)$1	246	163	184	14.8495
iiiiiiiqqqqqqqqiiiiii	chr16:30935324-30935579(+)$1	255	16	37	16.0454
cc[ddddqqqqqqqqdddd]c	chr1:203711522-203711762(+)$1	240	95	116	14.4201
fffff[aqqqqqqqqa]ffff	chr19:45391898-45392170(+)$1	272	200	221	14.1719
faeeeeeqqqqqqqqeeeee]	chr6:117996619-117996871(+)$1	252	142	163	14.0109
gggggggqqqqqqqqgggggg	chr5:148874947-148875260(-)$1	313	250	271	15.8211
dd[bb[aqqqqqqqqabb]dd	chr4:83274894-83275124(-)$1	230	85	106	13.6661
gggggggqqqqqqqqgggggg	chr14:93694241-93694585(+)$1	344	226	247	15.8211
b"""cccqqqqqqqqccc]bb	chr11:63526080-63526324(+)$1	244	188	209	14.5021
=======qqqqqqqq======	chr7:128409625-128409865(+)$1	240	135	156	15.9385
b[ccc[aqqqqqqqqa]cccb	chr2:220036736-220037092(-)$1	356	163	184	14.6972
dffffffqqqqqqqqffffff	chr2:33809616-33809879(-)$1	263	98	119	13.5547
d!!ddddqqqqqqqqdddd]d	chr22:21976886-21977186(+)$1	300	235	256	14.2970
dd[ddddqqqqqqqqdddd]d	chr5:96370095-96370324(+)$1	229	119	140	14.0313
fff[cccqqqqqqqqcccfff	chr21:46225916-46226206(-)$1	290	195	216	14.7686
iiiiiiiqqqqqqqqiiiiii	chr19:49964743-49965003(+)$1	260	186	207	16.0454
d"""cccqqqqqqqqccc]dd	chr9:123579119-123579393(-)$1	274	112	133	14.8181
=======qqqqqqqq======	chr1:154554686-154554930(-)$1	244	215	236	15.9385
ddd!!bbqqqqqqqqbb22dd	chr15:31669084-31669444(+)$1	360	60	81	13.3297
ddddcccqqqqqqqqccc]dd	chr7:92241130-92241364(-)$1	234	72	93	14.4184
gggggggqqqqqqqqgggggg	chr6:36823079-36823319(-)$1	240	44	65	15.8211
=======qqqqqqqq======	chr12:74934880-74935141(+)$1	261	184	205	15.9385
eee[cccqqqqqqqqccc]ee	chr4:79839905-79840132(-)$1	227	6	27	14.9976
dddd[bbqqqqqqqqbb]ddd	chr3:48786234-48786504(-)$1	270	224	245	13.5361
f[eeeeeqqqqqqqqeeeee2	chr10:73062041-73062343(+)$1	302	24	45	13.9886
=======qqqqqqqq======	chr9:111781242-111781483(-)$1	241	51	72	15.9385
eeeddddqqqqqqqqddddhh	chr4:89442339-89442616(-)$1	277	65	86	13.7925
====!!aqqqqqqqqa22===	chr1:160184777-160185005(+)$1	228	109	130	15.1301
bb!!cccqqqqqqqqccc]bb	chrX:70520359-70520626(+)$1	267	91	112	14.5281
gggggggqqqqqqqqgggggg	chr5:10280217-10280471(-)$1	254	124	145	15.8211
bb[ddddqqqqqqqqdddd]b	chr14:75549705-75549947(-)$1	242	32	53	13.7590
iiiiiiiqqqqqqqqiiiiii	chr5:72204543-72204828(+)$1	285	44	65	16.0454
$ffffffqqqqqqqqffffff	chr17:55761612-55761824(+)$1	212	36	57	13.3572
hhhhhhhqqqqqqqqhhhhhh	chr10:61549516-61549776(-)$1	260	1	22	14.2778
))eeeeeqqqqqqqqeeeeee	chr6:34556525-34556758(-)$1	233	163	184	12.8819
###ddddqqqqqqqqdddd==	chr5:96365845-96366091(+)$1	246	159	180	14.1667
ff!!cccqqqqqqqqcccfff	chr1:149915073-149915414(-)$1	341	162	183	15.0443
hhhhhhhqqqqqqqqhhhhhh	chr1:93618304-93618576(-)$1	272	228	249	14.2778
e!!ddddqqqqqqqqdddd22	chr10:72182954-72183217(+)$1	263	176	197	14.0231
f[bb[bbqqqqqqqqbbbbff	chr1:59247126-59247379(-)$1	253	89	110	13.1304
c[ccc[aqqqqqqqqa]ccc]	chr17:75496158-75496450(+)$1	292	139	160	15.1670
iiii[bbqqqqqqqqbb333i	chr12:46753967-46754324(-)$1	357	93	114	14.9611
gggggggqqqqqqqqgggggg	chr1:109856169-109856415(-)$1	246	224	245	15.8211
hhhhhhhqqqqqqqqhhhhhh	chr11:120358758-120359030(+)$1	272	184	205	14.2778
ffff[bbqqqqqqqqbbffff	chr19:44126656-44127009(-)$1	353	78	99	13.7529
gggg[bbqqqqqqqqbb]ggg	chr7:75957103-75957371(-)$1	268	37	58	15.0610
b[cccbbqqqqqqqqbb]ccc	chr1:150237736-150238010(-)$1	274	22	43	14.2637
c:eeeeeqqqqqqqqeeeee:	chr2:65496168-65496445(+)$1	277	39	60	11.9639

#otherMatches

#Seq PSSM
AUCAAAAAAUUCCUGUUUUGA	chr1:224575561-224575819(-)$1	258	147	168	15.8211
uaaaauaaaauaaaCUGUUUU	chr17:55761858-55762101(+)$1	243	164	185	15.8211
UGAAAAUUGUGUUGUGUUGUC	chr6:7289209-7289482(-)$1	273	98	119	15.4509
CUGGGUGUAAAAUGUUAUCCA	chr7:131180340-131180588(+)$1	248	182	203	14.2778
GUUUGGUUACUCAAUGCCCAG	chr15:69071975-69072235(-)$1	260	207	228	13.2068
GGAAAAUAAGUCUUCAUUUUU	chr6:163988574-163988836(+)$1	262	6	27	15.8211
AGGGCCAGGGAGGCAUGGCCC	chr16:2820991-2821238(+)$1	247	166	187	13.4928
UGGCAUCUAGAGCUUGAUGCC	chrX:64960716-64960998(+)$1	282	89	110	15.8211
UGAAGUCUCUAAUGUGACUGU	chrX:70519976-70520197(+)$1	221	175	196	14.2614
ACUUGAAUAUCAUCUUUGAAG	chr15:38776738-38777014(+)$1	276	192	213	14.0189
UGUUGCGUUUUUCCUUGUAGC	chr7:75956785-75957011(-)$1	226	74	95	14.2778
GAUGGUCAGGACCUGGGCCAU	chr17:41166636-41166892(-)$1	256	12	33	15.8211
GUAUGGCUUAGUUGUGUUCAU	chr12:46753754-46754021(-)$1	267	233	254	14.3753
UGAGAGUGGACUGUAGUUCUU	chr9:111781302-111781562(-)$1	260	130	151	16.0454
UGUUGCGUUUUUCCUUGUAGC	chr7:75956725-75956974(-)$1	249	37	58	14.2778
GGGCCCCGGGACUUGGAGGGU	chr17:40463424-40463697(+)$1	273	125	146	14.2630
GUUGAAGCUAGAAAUUUUCCU	chr5:126889444-126889738(+)$1	294	93	114	14.0055
UUAGAAUCUGCAGAAAUUAGG	chr1:15756424-15756670(+)$1	246	163	184	14.8495
GGACCCCUGGGCAGUGGGGUC	chr16:30935324-30935579(+)$1	255	16	37	16.0454
GUGCUUUGGAUUUGAAAAGGG	chr1:203711522-203711762(+)$1	240	95	116	14.4201
CCACCCUGUUCCCCAAAGGUG	chr19:45391898-45392170(+)$1	272	200	221	14.1719
GGGGCGGAUAAAAAGCCGUCG	chr6:117996619-117996871(+)$1	252	142	163	14.0109
UUUUCUCUGACCCAUGAGAAA	chr5:148874947-148875260(-)$1	313	250	271	15.8211
CAGUGUCAUGAUGUAGUAGUG	chr4:83274894-83275124(-)$1	230	85	106	13.6661
GCACGAAUGAUGAGUUUUGUG	chr14:93694241-93694585(+)$1	344	226	247	15.8211
GCCAUCUGAUAAAAAAGAAUA	chr11:63526080-63526324(+)$1	244	188	209	14.5021
AGUUGCUAUAGGUCCAGCAAC	chr7:128409625-128409865(+)$1	240	135	156	15.9385
AUGGGCCUGUGUGAUGUCCCU	chr2:220036736-220037092(-)$1	356	163	184	14.6972
AAUUCAGCACCUAUUUUGAAU	chr2:33809616-33809879(-)$1	263	98	119	13.5547
UCAAGCUCCACUUGAAGCUCA	chr22:21976886-21977186(+)$1	300	235	256	14.2970
CUCAACACAGUUUUUUGUUUG	chr5:96370095-96370324(+)$1	229	119	140	14.0313
UCUAUACAUAAAAAAGUAAGA	chr21:46225916-46226206(-)$1	290	195	216	14.7686
CCCAGCUGGCGGGGGAGCUGG	chr19:49964743-49965003(+)$1	260	186	207	16.0454
AAUGAACUUUGCCCUGUUGUG	chr9:123579119-123579393(-)$1	274	112	133	14.8181
UGGAGUCUUGGUUGUGACUCC	chr1:154554686-154554930(-)$1	244	215	236	15.9385
CCUACAAGUCACACAUUCCGG	chr15:31669084-31669444(+)$1	360	60	81	13.3297
UCCCUCCUUUGAAGUGGAUGG	chr7:92241130-92241364(-)$1	234	72	93	14.4184
GCCACUGUCAUUUCUCAGUGG	chr6:36823079-36823319(-)$1	240	44	65	15.8211
GGUAGUGAAGCUCACCACUGU	chr12:74934880-74935141(+)$1	261	184	205	15.9385
GGCUGCUUUGAAAAUGGCUGU	chr4:79839905-79840132(-)$1	227	6	27	14.9976
GACCCCAUAUUUUUCUGAGGU	chr3:48786234-48786504(-)$1	270	224	245	13.5361
GUGGGCACAUCAGGAUGCCCC	chr10:73062041-73062343(+)$1	302	24	45	13.9886
UGAGAGUGGACUGUAGUUCUU	chr9:111781242-111781483(-)$1	241	51	72	15.9385
UGCCCUUGUUUUUUGAAGGCU	chr4:89442339-89442616(-)$1	277	65	86	13.7925
GGGAAUGAGCAUGAACUGUCC	chr1:160184777-160185005(+)$1	228	109	130	15.1301
caccgugcccaaccUCACUUG	chrX:70520359-70520626(+)$1	267	91	112	14.5281
cagguguagugccucaugccu	chr5:10280217-10280471(-)$1	254	124	145	15.8211
ACACAUCCUACCUUUGAUGAG	chr14:75549705-75549947(-)$1	242	32	53	13.7590
ACCCUUUACAGGGGGGAAGGG	chr5:72204543-72204828(+)$1	285	44	65	16.0454
AGGAUGCAAGUCUAAGCGUUU	chr17:55761612-55761824(+)$1	212	36	57	13.3572
GGAGUUUUAAAUUCUGAGCUC	chr10:61549516-61549776(-)$1	260	1	22	14.2778
GUGUGAAAUUCCCUCUUCACC	chr6:34556525-34556758(-)$1	233	163	184	12.8819
UUGUAAGUCUUUAUUCUUGUG	chr5:96365845-96366091(+)$1	246	159	180	14.1667
GGUUGGAUAAAUUCUUCCCCU	chr1:149915073-149915414(-)$1	341	162	183	15.0443
AAUUUGCAAUGAGAAGCAAAU	chr1:93618304-93618576(-)$1	272	228	249	14.2778
GCCUCAUUCUUUUCUGUGACC	chr10:72182954-72183217(+)$1	263	176	197	14.0231
UGAGAGCGAGGCUGAGCCUAC	chr1:59247126-59247379(-)$1	253	89	110	13.1304
CCUCCCCACCCAAGAGAGGAA	chr17:75496158-75496450(+)$1	292	139	160	15.1670
UUGUACCAUGAAUUAGGAGCA	chr12:46753967-46754324(-)$1	357	93	114	14.9611
GGCUGGCACAGCCUGGCCGGC	chr1:109856169-109856415(-)$1	246	224	245	15.8211
CUUCCAUAUUUCAAAGUGGAA	chr11:120358758-120359030(+)$1	272	184	205	14.2778
GAGACAGCCCCAACCCUUUUC	chr19:44126656-44127009(-)$1	353	78	99	13.7529
UUUAGGCAAGAAGAGGUGUGA	chr7:75957103-75957371(-)$1	268	37	58	15.0610
ACUGGAGGAGUCAGACUACCA	chr1:150237736-150238010(-)$1	274	22	43	14.2637
GGUAUGCCUUUAUUAGCAUAA	chr2:65496168-65496445(+)$1	277	39	60	11.9639

#DB
(((((((........))))))	chr1:224575561-224575819(-)$1	1	147	168	15.8211
(((((((........))))))	chr17:55761858-55762101(+)$1	1	164	185	15.8211
((..(((........)))...	chr6:7289209-7289482(-)$1	1	98	119	15.4509
(((((((........))))))	chr7:131180340-131180588(+)$1	1	182	203	14.2778
(((((((........)))...	chr15:69071975-69072235(-)$1	1	207	228	13.2068
(((((((........))))))	chr6:163988574-163988836(+)$1	1	6	27	15.8211
(((((((........))))))	chr16:2820991-2821238(+)$1	1	166	187	13.4928
(((((((........))))))	chrX:64960716-64960998(+)$1	1	89	110	15.8211
(..((((........))))..	chrX:70519976-70520197(+)$1	1	175	196	14.2614
((((.((........)).)))	chr15:38776738-38777014(+)$1	1	192	213	14.0189
(((((((........))))))	chr7:75956785-75957011(-)$1	1	74	95	14.2778
(((((((........))))))	chr17:41166636-41166892(-)$1	1	12	33	15.8211
.((((((........).))))	chr12:46753754-46754021(-)$1	1	233	254	14.3753
(((((((........))))))	chr9:111781302-111781562(-)$1	1	130	151	16.0454
(((((((........))))))	chr7:75956725-75956974(-)$1	1	37	58	14.2778
.((((((........).))))	chr17:40463424-40463697(+)$1	1	125	146	14.2630
((.((((........))))..	chr5:126889444-126889738(+)$1	1	93	114	14.0055
((..(((........)))..)	chr1:15756424-15756670(+)$1	1	163	184	14.8495
(((((((........))))))	chr16:30935324-30935579(+)$1	1	16	37	16.0454
((.((((........)))).)	chr1:203711522-203711762(+)$1	1	95	116	14.4201
(((((.(........).))))	chr19:45391898-45392170(+)$1	1	200	221	14.1719
(((((((........))))).	chr6:117996619-117996871(+)$1	1	142	163	14.0109
(((((((........))))))	chr5:148874947-148875260(-)$1	1	250	271	15.8211
((.((.(........))).))	chr4:83274894-83275124(-)$1	1	85	106	13.6661
(((((((........))))))	chr14:93694241-93694585(+)$1	1	226	247	15.8211
(...(((........))).))	chr11:63526080-63526324(+)$1	1	188	209	14.5021
(((((((........))))))	chr7:128409625-128409865(+)$1	1	135	156	15.9385
(.(((.(........).))))	chr2:220036736-220037092(-)$1	1	163	184	14.6972
)((((((........))))))	chr2:33809616-33809879(-)$1	1	98	119	13.5547
(..((((........)))).)	chr22:21976886-21977186(+)$1	1	235	256	14.2970
((.((((........)))).)	chr5:96370095-96370324(+)$1	1	119	140	14.0313
(((.(((........))))))	chr21:46225916-46226206(-)$1	1	195	216	14.7686
(((((((........))))))	chr19:49964743-49965003(+)$1	1	186	207	16.0454
(...(((........))).))	chr9:123579119-123579393(-)$1	1	112	133	14.8181
(((((((........))))))	chr1:154554686-154554930(-)$1	1	215	236	15.9385
(((..((........))..))	chr15:31669084-31669444(+)$1	1	60	81	13.3297
(((((((........))).))	chr7:92241130-92241364(-)$1	1	72	93	14.4184
(((((((........))))))	chr6:36823079-36823319(-)$1	1	44	65	15.8211
(((((((........))))))	chr12:74934880-74935141(+)$1	1	184	205	15.9385
(((.(((........))).))	chr4:79839905-79840132(-)$1	1	6	27	14.9976
((((.((........)).)))	chr3:48786234-48786504(-)$1	1	224	245	13.5361
(.(((((........))))).	chr10:73062041-73062343(+)$1	1	24	45	13.9886
(((((((........))))))	chr9:111781242-111781483(-)$1	1	51	72	15.9385
)))((((........))))((	chr4:89442339-89442616(-)$1	1	65	86	13.7925
((((..(........)..)))	chr1:160184777-160185005(+)$1	1	109	130	15.1301
((..(((........))).))	chrX:70520359-70520626(+)$1	1	91	112	14.5281
(((((((........))))))	chr5:10280217-10280471(-)$1	1	124	145	15.8211
((.((((........)))).)	chr14:75549705-75549947(-)$1	1	32	53	13.7590
(((((((........))))))	chr5:72204543-72204828(+)$1	1	44	65	16.0454
.((((((........))))))	chr17:55761612-55761824(+)$1	1	36	57	13.3572
(((((((........))))))	chr10:61549516-61549776(-)$1	1	1	22	14.2778
..(((((........))))))	chr6:34556525-34556758(-)$1	1	163	184	12.8819
...((((........))))))	chr5:96365845-96366091(+)$1	1	159	180	14.1667
((..(((........))))))	chr1:149915073-149915414(-)$1	1	162	183	15.0443
(((((((........))))))	chr1:93618304-93618576(-)$1	1	228	249	14.2778
(..((((........))))..	chr10:72182954-72183217(+)$1	1	176	197	14.0231
(.((.((........))))))	chr1:59247126-59247379(-)$1	1	89	110	13.1304
(.(((.(........).))).	chr17:75496158-75496450(+)$1	1	139	160	15.1670
((((.((........))...)	chr12:46753967-46754324(-)$1	1	93	114	14.9611
(((((((........))))))	chr1:109856169-109856415(-)$1	1	224	245	15.8211
(((((((........))))))	chr11:120358758-120359030(+)$1	1	184	205	14.2778
((((.((........))))))	chr19:44126656-44127009(-)$1	1	78	99	13.7529
((((.((........)).)))	chr7:75957103-75957371(-)$1	1	37	58	15.0610
(.(((((........)).)))	chr1:150237736-150238010(-)$1	1	22	43	14.2637
).(((((........))))).	chr2:65496168-65496445(+)$1	1	39	60	11.9639

#PSSM
g : 0.16	d : 0.12	h : 0.10	f : 0.10	c : 0.09	b : 0.09	e : 0.07	i : 0.07	= : 0.07	! : 0.01	" : 0.01	$ : 0.01	) : 0.01	# : 0.01	
g : 0.16	h : 0.10	f : 0.10	e : 0.09	i : 0.07	d : 0.07	= : 0.07	[ : 0.07	c : 0.04	! : 0.04	" : 0.03	b : 0.03	a : 0.01	) : 0.01	# : 0.01	: : 0.01	
g : 0.16	e : 0.13	! : 0.10	h : 0.10	f : 0.09	i : 0.07	[ : 0.07	= : 0.07	c : 0.04	d : 0.04	" : 0.03	# : 0.01	b : 0.01	
g : 0.16	d : 0.16	h : 0.10	e : 0.10	! : 0.07	f : 0.07	i : 0.07	= : 0.07	c : 0.04	b : 0.03	" : 0.03	[ : 0.03	
c : 0.20	g : 0.15	d : 0.13	h : 0.09	[ : 0.09	e : 0.09	f : 0.06	i : 0.06	= : 0.06	! : 0.03	b : 0.01	
g : 0.15	c : 0.15	d : 0.13	b : 0.12	h : 0.09	e : 0.09	i : 0.06	[ : 0.06	= : 0.06	f : 0.04	! : 0.01	
g : 0.15	c : 0.15	d : 0.13	b : 0.12	a : 0.10	h : 0.09	i : 0.06	e : 0.06	= : 0.06	f : 0.04	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
g : 0.15	c : 0.15	d : 0.13	b : 0.12	a : 0.10	h : 0.09	i : 0.06	e : 0.06	= : 0.06	f : 0.04	
g : 0.15	c : 0.15	d : 0.13	b : 0.13	h : 0.09	] : 0.07	i : 0.06	e : 0.06	= : 0.06	f : 0.04	2 : 0.01	
c : 0.18	g : 0.15	d : 0.13	h : 0.09	e : 0.09	f : 0.07	] : 0.06	i : 0.06	= : 0.06	b : 0.03	2 : 0.03	3 : 0.01	
g : 0.16	d : 0.15	f : 0.10	e : 0.10	h : 0.09	] : 0.09	= : 0.07	i : 0.06	c : 0.04	3 : 0.03	2 : 0.03	6 : 0.01	b : 0.01	
g : 0.16	f : 0.12	e : 0.12	h : 0.10	= : 0.09	d : 0.07	i : 0.06	] : 0.06	2 : 0.04	c : 0.04	3 : 0.03	b : 0.03	6 : 0.01	4 : 0.01	
g : 0.16	f : 0.12	h : 0.10	d : 0.10	e : 0.09	= : 0.09	i : 0.07	b : 0.06	2 : 0.04	c : 0.03	] : 0.03	3 : 0.01	6 : 0.01	4 : 0.01	: : 0.01	

#score	951.9316860918142
#seq	65
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_CDS_m3_run2.txt

#BEAR
!!a[bbpppppppbb]a	chr20:13756528-13756869(-)$1	341	117	134	12.1145
!!ddddpppppppdddd	chr9:19376395-19376623(-)$1	228	51	68	14.0632
$eeeeepppppppeeee	chr11:2156523-2156727(-)$1	204	46	63	13.3184
ddddrrrrrrrrrdddd	chr10:120797651-120797907(-)$1	256	95	112	10.2328
ddddbbpppppppbb]d	chr6:7572133-7572370(+)$1	237	64	81	12.3495
ggggggpppppppgggg	chr17:49067024-49067333(-)$1	309	249	266	12.3610
::ddddpppppppdddd	chr12:76449711-76449949(-)$1	238	1	18	12.1380
ffffffpppppppffff	chr19:4048109-4048446(-)$1	337	67	84	11.9114
::ddddpppppppdddd	chr17:38297363-38297605(+)$1	242	50	67	12.1380
ffff[apppppppa]ff	chr6:44218149-44218369(+)$1	220	44	61	12.1280
c[ddddpppppppdddd	chr11:2154724-2154949(-)$1	225	176	193	13.8720
ddddrrrrrrrrrdddd	chr18:47017829-47018062(-)$1	233	152	169	10.2328
ggggggpppppppgggg	chr12:76453493-76453740(-)$1	247	168	185	12.3610
ddddrrrrrrrrrdddd	chr11:2154313-2154524(-)$1	211	80	97	10.2328
ccccccpppppppccc]	chr20:62324532-62324855(+)$1	323	133	150	12.9879
dd[cccpppppppcccd	chr4:69203203-69203469(-)$1	266	55	72	13.0863
ffffffpppppppffff	chr19:10488971-10489228(-)$1	257	188	205	11.9114
[eeeeepppppppeeee	chr6:44220704-44220927(+)$1	223	122	139	13.3834
aeeeeepppppppeeee	chr12:76446889-76447104(-)$1	215	61	78	13.3495
c:ddddpppppppdddd	chr12:76442882-76443092(-)$1	210	114	131	12.8966
"""cccpppppppccc3	chr1:32797662-32797947(+)$1	285	247	264	13.1500
:eeeeepppppppeeee	chr3:42680767-42681016(+)$1	249	89	106	12.5476
%%ddddpppppppdddd	chr2:99995397-99995660(+)$1	263	96	113	12.8767
$eeeeepppppppeeee	chr11:2156567-2156787(-)$1	220	106	123	13.3184
eeecccpppppppccc:	chr15:66791721-66791967(-)$1	246	12	29	12.0911
ffffffpppppppffff	chr11:129991593-129991805(+)$1	212	109	126	11.9114
a[ddddpppppppdddd	chr1:171510097-171510374(+)$1	277	216	233	13.9154
::ddddpppppppdddd	chr1:70716270-70716536(+)$1	266	186	203	12.1380
ddddrrrrrrrrrdddd	chr11:2154271-2154478(-)$1	207	34	51	10.2328
c[ddddpppppppdddd	chr11:2154657-2154862(-)$1	205	89	106	13.8720
:eeeeepppppppeeee	chr9:131345409-131345661(+)$1	252	110	127	12.5476
ddddrrrrrrrrrdddd	chr11:2154341-2154547(-)$1	206	103	120	10.2328
ddddrrrrrrrrrdddd	chr11:2154332-2154541(-)$1	209	97	114	10.2328
ddddrrrrrrrrrdddd	chr6:44219792-44220042(+)$1	250	202	219	10.2328
ffff[apppppppa]ff	chr6:44218169-44218379(+)$1	210	24	41	12.1280
fff[bbpppppppbb]f	chr22:50297581-50297870(-)$1	289	267	284	11.5504
$eeeeepppppppeeee	chr11:2156596-2156800(-)$1	204	119	136	13.3184
fff[bbpppppppbb22	chr6:157527418-157527748(+)$1	330	6	23	11.2217
ffff[apppppppa]ff	chr6:44218110-44218349(+)$1	239	83	100	12.1280
"""cccpppppppccc2	chr6:144782343-144782577(+)$1	234	104	121	12.9892
c"""bbpppppppbb]c	chr15:25616579-25616912(-)$1	333	156	173	11.7694
dddcccpppppppccc]	chr12:112638377-112638692(-)$1	315	198	215	13.0982
!eeeeepppppppeeee	chr21:47612752-47612981(-)$1	229	201	218	13.4782
!eeeeepppppppeeee	chr19:57325131-57325400(-)$1	269	147	164	13.4782
G:ddddpppppppdddd	chr11:2154685-2154891(-)$1	206	153	170	12.3855
a[ddddpppppppdddd	chr17:38318152-38318385(+)$1	233	28	45	13.9154
$eeeeepppppppeeee	chr11:2156587-2156796(-)$1	209	115	132	13.3184
#eeeeepppppppeeee	chr6:144783803-144784047(+)$1	244	174	191	13.4451
ddddrrrrrrrrrdddd	chr2:178080782-178081030(+)$1	248	107	124	10.2328
eeee[apppppppa]ee	chr22:24313705-24313933(-)$1	228	4	21	12.9024
cc:cccpppppppccc:	chr17:38317950-38318264(+)$1	314	108	125	11.0917
!!ddddpppppppdddd	chr12:76449796-76450042(-)$1	246	94	111	14.0632
cc!!bbpppppppbb22	chr11:35685022-35685303(+)$1	281	143	160	11.5317
###cccpppppppccc3	chr2:71360537-71360807(+)$1	270	111	128	13.0541
""ddddpppppppdddd	chr6:7577153-7577375(+)$1	222	29	46	13.9824
ffffffpppppppffff	chr17:60108824-60109107(-)$1	283	207	224	11.9114
dd[cccpppppppccc]	chr3:121412686-121412957(-)$1	271	62	79	12.9376
cc:cccpppppppccc:	chr17:38317904-38318150(+)$1	246	154	171	11.0917
$eeeeepppppppeeee	chr11:2156563-2156767(-)$1	204	86	103	13.3184
ddddrrrrrrrrrdddd	chr11:2154267-2154471(-)$1	204	27	44	10.2328
a[ddddpppppppdddd	chr12:76444245-76444486(-)$1	241	95	112	13.9154

#otherMatches

#Seq PSSM
gaugacgauggaaguga	chr20:13756528-13756869(-)$1	341	117	134	12.1145
AUUGCUCUGAAGAAGCA	chr9:19376395-19376623(-)$1	228	51	68	14.0632
GCUUACCGCCCCAGUGA	chr11:2156523-2156727(-)$1	204	46	63	13.3184
cccugagagagaaaggg	chr10:120797651-120797907(-)$1	256	95	112	10.2328
GCAGGCAGAUAGAGCAC	chr6:7572133-7572370(+)$1	237	64	81	12.3495
UUGGGAGUUCAGAUCCC	chr17:49067024-49067333(-)$1	309	249	266	12.3610
AAUCAAGGAGGAAUUGA	chr12:76449711-76449949(-)$1	238	1	18	12.1380
GCACCGAAACCUCUGGU	chr19:4048109-4048446(-)$1	337	67	84	11.9114
CCUCUGGAAAUCACAGA	chr17:38297363-38297605(+)$1	242	50	67	12.1380
ucaaagagaaAUACAUU	chr6:44218149-44218369(+)$1	220	44	61	12.1280
GUGUCGACCCCUCCGAC	chr11:2154724-2154949(-)$1	225	176	193	13.8720
CCACGAAAUGUAAGUGG	chr18:47017829-47018062(-)$1	233	152	169	10.2328
UACCAACUUUAUUUUGG	chr12:76453493-76453740(-)$1	247	168	185	12.3610
CCCAGAUACCCCGUGGG	chr11:2154313-2154524(-)$1	211	80	97	10.2328
ACUCCUGCGUGGAAGGC	chr20:62324532-62324855(+)$1	323	133	150	12.9879
AUCGGAAAAUUCGUCUA	chr4:69203203-69203469(-)$1	266	55	72	13.0863
GUUGGGGAUGGAGCCCA	chr19:10488971-10489228(-)$1	257	188	205	11.9114
ACCAGCACCUACGGCUG	chr6:44220704-44220927(+)$1	223	122	139	13.3834
UACUGUGACUAAAACAG	chr12:76446889-76447104(-)$1	215	61	78	13.3495
UGAGCAAAAUUAGUGCU	chr12:76442882-76443092(-)$1	210	114	131	12.8966
GAGGAGGGAGUGACUCA	chr1:32797662-32797947(+)$1	285	247	264	13.1500
CUCAUUGAUAAGAAAUG	chr3:42680767-42681016(+)$1	249	89	106	12.5476
GAACAUAGUAAAAAUGU	chr2:99995397-99995660(+)$1	263	96	113	12.8767
GCUUACCGCCCCAGUGA	chr11:2156567-2156787(-)$1	220	106	123	13.3184
AGCGGCACUACAAGCCA	chr15:66791721-66791967(-)$1	246	12	29	12.0911
AAGGUAACUCUUCUACU	chr11:129991593-129991805(+)$1	212	109	126	11.9114
CCUCUCAGACAGCGAGA	chr1:171510097-171510374(+)$1	277	216	233	13.9154
AUCAUGAAGAAGACAUG	chr1:70716270-70716536(+)$1	266	186	203	12.1380
CCCAGAUACCCCGUGGG	chr11:2154271-2154478(-)$1	207	34	51	10.2328
GUGUCGACCCCUCCGAC	chr11:2154657-2154862(-)$1	205	89	106	13.8720
CAGUUUGUGGAAGAAAC	chr9:131345409-131345661(+)$1	252	110	127	12.5476
CCCAGAUACCCCGUGGG	chr11:2154341-2154547(-)$1	206	103	120	10.2328
CCCAGAUACCCCGUGGG	chr11:2154332-2154541(-)$1	209	97	114	10.2328
GGUUGAGAAGGUAAGCC	chr6:44219792-44220042(+)$1	250	202	219	10.2328
ucaaagagaaAUACAUU	chr6:44218169-44218379(+)$1	210	24	41	12.1280
CCUGGCCAGCGUCGUGG	chr22:50297581-50297870(-)$1	289	267	284	11.5504
GCUUACCGCCCCAGUGA	chr11:2156596-2156800(-)$1	204	119	136	13.3184
GGAAGGAUGACAGCCAG	chr6:157527418-157527748(+)$1	330	6	23	11.2217
ucaaagagaaAUACAUU	chr6:44218110-44218349(+)$1	239	83	100	12.1280
CAAGGUGGAGAAGGCCC	chr6:144782343-144782577(+)$1	234	104	121	12.9892
GAAAAGGAAAAAGCUGC	chr15:25616579-25616912(-)$1	333	156	173	11.7694
ACUGCCACCAAUGGGCU	chr12:112638377-112638692(-)$1	315	198	215	13.0982
AGAUGCACCCGCAGUAU	chr21:47612752-47612981(-)$1	229	201	218	13.4782
AUUCAGUGAACACCUGA	chr19:57325131-57325400(-)$1	269	147	164	13.4782
CCUGGGCCCCUUUCCCA	chr11:2154685-2154891(-)$1	206	153	170	12.3855
GUCCUCCAUUUUAGAGG	chr17:38318152-38318385(+)$1	233	28	45	13.9154
GCUUACCGCCCCAGUGA	chr11:2156587-2156796(-)$1	209	115	132	13.3184
UGCUCUCACACUCAGAG	chr6:144783803-144784047(+)$1	244	174	191	13.4451
AUCAUGAUACAGUUGAU	chr2:178080782-178081030(+)$1	248	107	124	10.2328
CCUGGUGGACUGAGGCA	chr22:24313705-24313933(-)$1	228	4	21	12.9024
AGAAGCUAAUGAUGCUG	chr17:38317950-38318264(+)$1	314	108	125	11.0917
AAUCAAGGAGGAAUUGA	chr12:76449796-76450042(-)$1	246	94	111	14.0632
GGAAGCAGAGAGAGUGG	chr11:35685022-35685303(+)$1	281	143	160	11.5317
UGAAGAUAUUGAUUCUG	chr2:71360537-71360807(+)$1	270	111	128	13.0541
UUUGUAUAGAACUUGCA	chr6:7577153-7577375(+)$1	222	29	46	13.9824
GCUUGGGUGUCCACCAA	chr17:60108824-60109107(-)$1	283	207	224	11.9114
CACUUGGAAGAGACAAU	chr3:121412686-121412957(-)$1	271	62	79	12.9376
AGAAGCUAAUGAUGCUG	chr17:38317904-38318150(+)$1	246	154	171	11.0917
GCUUACCGCCCCAGUGA	chr11:2156563-2156767(-)$1	204	86	103	13.3184
CCCAGAUACCCCGUGGG	chr11:2154267-2154471(-)$1	204	27	44	10.2328
GGUCACUUUUUACGUGA	chr12:76444245-76444486(-)$1	241	95	112	13.9154

#DB
..(.((.......)).)	chr20:13756528-13756869(-)$1	1	117	134	12.1145
..((((.......))))	chr9:19376395-19376623(-)$1	1	51	68	14.0632
.(((((.......))))	chr11:2156523-2156727(-)$1	1	46	63	13.3184
((((.........))))	chr10:120797651-120797907(-)$1	1	95	112	10.2328
((((((.......)).)	chr6:7572133-7572370(+)$1	1	64	81	12.3495
((((((.......))))	chr17:49067024-49067333(-)$1	1	249	266	12.3610
..((((.......))))	chr12:76449711-76449949(-)$1	1	1	18	12.1380
((((((.......))))	chr19:4048109-4048446(-)$1	1	67	84	11.9114
..((((.......))))	chr17:38297363-38297605(+)$1	1	50	67	12.1380
((((.(.......).))	chr6:44218149-44218369(+)$1	1	44	61	12.1280
(.((((.......))))	chr11:2154724-2154949(-)$1	1	176	193	13.8720
((((.........))))	chr18:47017829-47018062(-)$1	1	152	169	10.2328
((((((.......))))	chr12:76453493-76453740(-)$1	1	168	185	12.3610
((((.........))))	chr11:2154313-2154524(-)$1	1	80	97	10.2328
((((((.......))).	chr20:62324532-62324855(+)$1	1	133	150	12.9879
((.(((.......))))	chr4:69203203-69203469(-)$1	1	55	72	13.0863
((((((.......))))	chr19:10488971-10489228(-)$1	1	188	205	11.9114
.(((((.......))))	chr6:44220704-44220927(+)$1	1	122	139	13.3834
)(((((.......))))	chr12:76446889-76447104(-)$1	1	61	78	13.3495
).((((.......))))	chr12:76442882-76443092(-)$1	1	114	131	12.8966
...(((.......))).	chr1:32797662-32797947(+)$1	1	247	264	13.1500
.(((((.......))))	chr3:42680767-42681016(+)$1	1	89	106	12.5476
..((((.......))))	chr2:99995397-99995660(+)$1	1	96	113	12.8767
.(((((.......))))	chr11:2156567-2156787(-)$1	1	106	123	13.3184
)))(((.......))).	chr15:66791721-66791967(-)$1	1	12	29	12.0911
((((((.......))))	chr11:129991593-129991805(+)$1	1	109	126	11.9114
(.((((.......))))	chr1:171510097-171510374(+)$1	1	216	233	13.9154
..((((.......))))	chr1:70716270-70716536(+)$1	1	186	203	12.1380
((((.........))))	chr11:2154271-2154478(-)$1	1	34	51	10.2328
(.((((.......))))	chr11:2154657-2154862(-)$1	1	89	106	13.8720
.(((((.......))))	chr9:131345409-131345661(+)$1	1	110	127	12.5476
((((.........))))	chr11:2154341-2154547(-)$1	1	103	120	10.2328
((((.........))))	chr11:2154332-2154541(-)$1	1	97	114	10.2328
((((.........))))	chr6:44219792-44220042(+)$1	1	202	219	10.2328
((((.(.......).))	chr6:44218169-44218379(+)$1	1	24	41	12.1280
(((.((.......)).)	chr22:50297581-50297870(-)$1	1	267	284	11.5504
.(((((.......))))	chr11:2156596-2156800(-)$1	1	119	136	13.3184
(((.((.......))..	chr6:157527418-157527748(+)$1	1	6	23	11.2217
((((.(.......).))	chr6:44218110-44218349(+)$1	1	83	100	12.1280
...(((.......))).	chr6:144782343-144782577(+)$1	1	104	121	12.9892
(...((.......)).)	chr15:25616579-25616912(-)$1	1	156	173	11.7694
((((((.......))).	chr12:112638377-112638692(-)$1	1	198	215	13.0982
.(((((.......))))	chr21:47612752-47612981(-)$1	1	201	218	13.4782
.(((((.......))))	chr19:57325131-57325400(-)$1	1	147	164	13.4782
).((((.......))))	chr11:2154685-2154891(-)$1	1	153	170	12.3855
(.((((.......))))	chr17:38318152-38318385(+)$1	1	28	45	13.9154
.(((((.......))))	chr11:2156587-2156796(-)$1	1	115	132	13.3184
.(((((.......))))	chr6:144783803-144784047(+)$1	1	174	191	13.4451
((((.........))))	chr2:178080782-178081030(+)$1	1	107	124	10.2328
((((.(.......).))	chr22:24313705-24313933(-)$1	1	4	21	12.9024
)).(((.......))).	chr17:38317950-38318264(+)$1	1	108	125	11.0917
..((((.......))))	chr12:76449796-76450042(-)$1	1	94	111	14.0632
((..((.......))..	chr11:35685022-35685303(+)$1	1	143	160	11.5317
...(((.......))).	chr2:71360537-71360807(+)$1	1	111	128	13.0541
..((((.......))))	chr6:7577153-7577375(+)$1	1	29	46	13.9824
((((((.......))))	chr17:60108824-60109107(-)$1	1	207	224	11.9114
((.(((.......))).	chr3:121412686-121412957(-)$1	1	62	79	12.9376
)).(((.......))).	chr17:38317904-38318150(+)$1	1	154	171	11.0917
.(((((.......))))	chr11:2156563-2156767(-)$1	1	86	103	13.3184
((((.........))))	chr11:2154267-2154471(-)$1	1	27	44	10.2328
(.((((.......))))	chr12:76444245-76444486(-)$1	1	95	112	13.9154

#PSSM
d : 0.21	f : 0.14	c : 0.13	! : 0.08	$ : 0.08	: : 0.08	a : 0.06	" : 0.04	g : 0.03	e : 0.03	# : 0.03	[ : 0.01	% : 0.01	G : 0.01	
e : 0.22	d : 0.21	f : 0.14	: : 0.08	[ : 0.08	c : 0.06	" : 0.06	! : 0.04	g : 0.03	% : 0.01	# : 0.01	
d : 0.40	e : 0.22	f : 0.14	" : 0.04	g : 0.03	[ : 0.03	: : 0.03	a : 0.01	c : 0.01	! : 0.01	# : 0.01	
d : 0.39	e : 0.21	c : 0.16	f : 0.11	[ : 0.04	g : 0.03	" : 0.01	! : 0.01	
d : 0.22	e : 0.19	c : 0.16	r : 0.14	b : 0.09	f : 0.06	[ : 0.06	g : 0.03	
d : 0.22	e : 0.19	c : 0.16	r : 0.14	b : 0.09	f : 0.06	a : 0.06	g : 0.03	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
d : 0.37	e : 0.19	c : 0.16	b : 0.09	f : 0.06	a : 0.06	g : 0.03	
d : 0.37	e : 0.19	c : 0.16	b : 0.09	f : 0.06	] : 0.06	g : 0.03	
d : 0.37	e : 0.21	c : 0.16	f : 0.11	] : 0.06	g : 0.03	2 : 0.03	
d : 0.40	e : 0.21	f : 0.13	] : 0.04	: : 0.04	2 : 0.04	g : 0.03	3 : 0.03	a : 0.01	c : 0.01	

#score	754.8611770887612
#seq	61
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_UTR_m2_run1.txt

#BEAR
]cccggggggg[aooooooagggggggCC	chr14:35786333-35786628(+)$1	295	168	197	11.1558
b[dddd[eeeeeooooooeeeee]dddd]	chr7:141450017-141450261(+)$1	244	84	113	10.2544
ffff$$$$$ddddoooooodddd22ffff	chr1:155883864-155884099(-)$1	235	152	181	11.2288
#ccc[eeeee[bboooooobbeeeee]cc	chr17:45258831-45259118(-)$1	287	123	152	13.0439
ddd####ffffffooooooffffff22dd	chr16:71841908-71842164(-)$1	256	30	59	11.6348
[iiiiiiiiirrrrrrrrriiiiiiiii]	chr21:30339293-30339617(-)$1	324	132	161	10.2342
ffff!!gggggggooooooggggggg]ff	chr12:132199018-132199291(+)$1	273	211	240	13.6440
""==========rrrrrrrrr========	chr9:37186595-37186848(+)$1	253	140	169	11.0033
[ffffffdddd[aooooooadddd]ffff	chr14:104153304-104153585(+)$1	281	159	188	11.6124
Ebb!!ccc"""bboooooobb333ccc22	chr1:10241117-10241370(+)$1	253	220	249	12.5464
=========!!bbnnnnnbb22=======	chr4:164440372-164440622(+)$1	250	2	31	10.6777
""dddd####eeeeeooooooeeeee333	chr5:95226588-95226861(-)$1	273	65	94	10.5035
cc"""hhhhhhhhoooooohhhhhhhh]c	chr5:65465769-65466057(+)$1	288	37	66	11.2943
ffffff"""ddddoooooodddd333fff	chr20:57242434-57242715(+)$1	281	237	266	12.3462
"""a"""ccc[bbnnnnnbb]ccc333a]	chr19:54972703-54972912(+)$1	209	31	60	11.5652
gggggg"""ddddoooooodddd22gggg	chr2:198284817-198285068(-)$1	251	154	183	13.0122
:bb"""gggggggooooooggggggg444	chr7:23561898-23562160(-)$1	262	132	161	13.5713
c[a####gggggggmmmmggggggg22a]	chr7:86817281-86817540(+)$1	259	79	108	9.6931
cciiiiiiiii[aooooooa]iiiiiiii	chr2:20526990-20527251(-)$1	261	53	82	14.2846
[============rrrrrrrrr=======	chr17:34161472-34161716(+)$1	244	157	186	10.5629
eeee[ccc!!cccoooooocccccc]eee	chr11:3765729-3765981(-)$1	252	46	75	12.4575
ggggggg[bb[bboooooobb]bbggggg	chr2:210884280-210884529(+)$1	249	190	219	12.4597
"""a[eeeeerrrrrrrrreeeee]a333	chr9:134305368-134305621(+)$1	253	169	198	9.8849
::ccc[gggggggoooooogggggggccc	chrX:151138734-151138988(-)$1	254	0	29	12.0251
dffffff[addddoooooodddd]a]fff	chr11:799849-800127(-)$1	278	222	251	11.6119
b[ccceeeee[bboooooobb]eeeee22	chr3:9516640-9516902(+)$1	262	197	226	12.5392
###eeeee"""bboooooobbeeeeeccc	chr7:86792447-86792705(+)$1	258	165	194	13.0778
!!dddd"""ddddoooooodddd]dddd]	chr3:9475410-9475662(+)$1	252	75	104	12.5970
"""dddd"""cccooooooccc22dddd]	chr1:100964352-100964634(+)$1	282	35	64	12.7581
###ccc[dddd[aooooooa]ddddccc2	chrX:12994161-12994411(+)$1	250	135	164	13.3063
eee####ddddbboooooobb]dddd333	chr14:23794343-23794594(+)$1	251	112	141	13.2673
fffcccgggggggooooooggggggg:bb	chr1:67405592-67405863(+)$1	271	211	240	11.7353
###ggggggg[bblllbb]ggggggg22i	chr17:46053138-46053373(+)$1	235	27	56	10.0922
iiii$$$$$ddddooooooddddiiiiii	chr12:69667903-69668195(+)$1	292	145	174	12.8779
fff####ffffffooooooffffff22ff	chr4:140037816-140038072(-)$1	256	32	61	12.1634
!!bb"""bb!!bboooooobb22bb22bb	chr15:63922670-63922941(-)$1	271	133	162	11.9281
!!ccc[ccc!!bbmmmmbb]ccc]ccc22	chr18:12986713-12987052(+)$1	339	184	213	8.8128
=======]cccbboooooobb:ggggggg	chr6:31730650-31730925(+)$1	275	125	154	12.6601
ccc####ffffffooooooffffff333c	chr2:39519835-39520071(-)$1	236	83	112	13.2552
##bbffffff!!aooooooa22ffffff]	chr4:79791818-79792068(+)$1	250	136	165	12.0716
cccffffff[cccoooooocccffffff:	chr17:25631694-25631954(+)$1	260	174	203	11.0546
[a[eeeee"""ccclllccc]eeeee]a]	chr5:179045173-179045414(-)$1	241	90	119	9.1063
ee!!ccc!!ddddooooooddddccc]ee	chr20:60755112-60755400(+)$1	288	168	197	12.7506
dd[dddd!!ddddoooooodddddddd33	chr5:176696481-176696744(+)$1	263	145	174	11.9004
gggggggggggggooooooggggggg444	chr9:95015607-95015837(-)$1	230	1	30	14.1810
!!ggggggg!!bboooooobbggggggg]	chr5:65449179-65449430(+)$1	251	54	83	14.8035
ff####a[eeeeeooooooeeeee]a22f	chr11:243914-244198(+)$1	284	225	254	13.0532
hhhhhhhh!!cccooooooccc22hhhhh	chr19:19105127-19105407(-)$1	280	154	183	10.4059
####ccc[eeeeeooooooeeeee]ccc4	chr17:61877730-61877997(+)$1	267	44	73	13.5068
"""a"""ccc[bbnnnnnbb]ccc333a]	chr19:54972712-54972964(+)$1	252	22	51	11.5652
:::==========oooooo==========	chr4:6825799-6826051(+)$1	252	30	59	12.1297
bb!!gggggggbbnnnnnbb]ggggggg2	chrX:110928095-110928329(+)$1	234	56	85	10.1028
ccc"""gggggggooooooggggggg333	chr6:83896632-83896906(-)$1	274	28	57	15.2189
e"""ccc!!ddddoooooodddd]ccc44	chrX:16186865-16187130(-)$1	265	110	139	13.8567
"""iiiiiiiiinnnnniiiiiiiii333	chr14:20825696-20825936(+)$1	240	83	112	11.0216

#otherMatches

#Seq PSSM
AGAGAGACUAAACAUUGUCGUUAGUUUAC	chr14:35786333-35786628(+)$1	295	168	197	11.1558
UUUUUACAGAUAAUAUUAUAUUUCUGAGU	chr7:141450017-141450261(+)$1	244	84	113	10.2544
GCUAAACAACAGAUGCCAUUCUGGAUGGC	chr1:155883864-155884099(-)$1	235	152	181	11.2288
AUGGCAAGCACUAAACCACUAUGCUUACC	chr17:45258831-45259118(-)$1	287	123	152	13.0439
AAUUUUUCGUGUGUGUGUGUAUAUGUUGU	chr16:71841908-71842164(-)$1	256	30	59	11.6348
AUGCAGUUCUCAAAGACCCAGGAUUGCAA	chr21:30339293-30339617(-)$1	324	132	161	10.2342
UUAAAACUAUUUUACCUCAAAAGUAGGUU	chr12:132199018-132199291(+)$1	273	211	240	13.6440
CAAGAUGAAUUAAAGAUGGAAUGAUUCAU	chr9:37186595-37186848(+)$1	253	140	169	11.0033
GGGCUUCCAUUAGACGCAGCAGUGAGAAG	chr14:104153304-104153585(+)$1	281	159	188	11.6124
GGCAGGGCGGGUGGGUAAACAAGAGCCAA	chr1:10241117-10241370(+)$1	253	220	249	12.5464
AAGUUUUGAAUAUGUAGGAUCCUCAGAGU	chr4:164440372-164440622(+)$1	250	2	31	10.6777
UUGUAACUAGAUGGGCUGACUUUCAUAUU	chr5:95226588-95226861(-)$1	273	65	94	10.5035
AUAGAUUUUAAAUUUUCUUGUUUGAAAGA	chr5:65465769-65466057(+)$1	288	37	66	11.2943
UCAUAGCAUCUUGUUUUUUUAAGUAAUUA	chr20:57242434-57242715(+)$1	281	237	266	12.3462
CUCGUCUCAAGUUGUAUAAAGUUGUCUCC	chr19:54972703-54972912(+)$1	209	31	60	11.5652
CAAAGGGUUAAAGGUUUUACUUUUACUUU	chr2:198284817-198285068(-)$1	251	154	183	13.0122
AGAGUUUUUUCCAAGAAUGUGGAAGAUAA	chr7:23561898-23562160(-)$1	262	132	161	13.5713
GUCUGUCGGAGAAUCAAUGUUCUUUUUGU	chr7:86817281-86817540(+)$1	259	79	108	9.6931
GUUGAAGAAGUCUGUUUAAACAUUUCUUU	chr2:20526990-20527251(-)$1	261	53	82	14.2846
GCCAUUAAGAAAAUGUUAGUUUUUUUUUU	chr17:34161472-34161716(+)$1	244	157	186	10.5629
GCACAACAUUGAAAGGAUCUUCUGUGGUG	chr11:3765729-3765981(-)$1	252	46	75	12.4575
AAUGUUUGCUCAGAAGCUGCUCAGAAACG	chr2:210884280-210884529(+)$1	249	190	219	12.4597
GAUCGUUUGGGGCAAAUUACCAAGGGCAA	chr9:134305368-134305621(+)$1	253	169	198	9.8849
UUAACUAGGUUUUGUGUUGAAAACUUGUU	chrX:151138734-151138988(-)$1	254	0	29	12.0251
UGGCUGGGCGUCUGGGUCUGGACUGGCCA	chr11:799849-800127(-)$1	278	222	251	11.6119
CAGGUGAGAUGAGAAAUUGCUGGUCUCUA	chr3:9516640-9516902(+)$1	262	197	226	12.5392
AUCAUUUCUGUCCUUCAUUGGGGAAUACU	chr7:86792447-86792705(+)$1	258	165	194	13.0778
UUAGGUGUUAUGCUAUCAUGCAUUGCUUU	chr3:9475410-9475662(+)$1	252	75	104	12.5970
CCCCUAAUGUCAUGAGUAUGUGUUUUAGA	chr1:100964352-100964634(+)$1	282	35	64	12.7581
GUUCCCAGCCCAGAGACAGCGGGGCGGGU	chrX:12994161-12994411(+)$1	250	135	164	13.3063
GGGCCGGGCUAGAGCGACAUCAUGGUAUU	chr14:23794343-23794594(+)$1	251	112	141	13.2673
UAGAGGAGUUAGACUAUUAUCUGACUUGC	chr1:67405592-67405863(+)$1	271	211	240	11.7353
CCCAGGCCAAAGCCCAGUGUUGGCCUUAC	chr17:46053138-46053373(+)$1	235	27	56	10.0922
UUGAUAUAUGGCCAUUGUCGGCCUUAAAC	chr12:69667903-69668195(+)$1	292	145	174	12.8779
AUUUCUUUCUUGAAGAAUCUCAGGACUAA	chr4:140037816-140038072(-)$1	256	32	61	12.1634
CGUGCUCGCAAUCACAAUCGACCGCAACA	chr15:63922670-63922941(-)$1	271	133	162	11.9281
UCGAGAUGGUCCAGUUAUGCCCAGCUCCU	chr18:12986713-12987052(+)$1	339	184	213	8.8128
GGGACCAGCCCGGGCUGCACCAGUGGGAG	chr6:31730650-31730925(+)$1	275	125	154	12.6601
GACAUUAUCCUUUUUAUUUAGAGGACACG	chr2:39519835-39520071(-)$1	236	83	112	13.2552
AUGGCCCUGAAAUUUUAUUGGGUCAGGGA	chr4:79791818-79792068(+)$1	250	136	165	12.0716
AUGGAAGCUUGAUCCUGGUGUCAGCUUCA	chr17:25631694-25631954(+)$1	260	174	203	11.0546
GUAUAUUGAAAUCUUUAAGAGCAGUAGAG	chr5:179045173-179045414(-)$1	241	90	119	9.1063
AGUCACAUCCAGUUACAUUACUGUGUUCU	chr20:60755112-60755400(+)$1	288	168	197	12.7506
UCCUCGAGCUGUUCCUUCCAACAUUGAUA	chr5:176696481-176696744(+)$1	263	145	174	11.9004
UGGAUGGAAGGAGCUGCCCCUUCUUUGUU	chr9:95015607-95015837(-)$1	230	1	30	14.1810
AAUGAUAAAACCAAGCAAAUGUUUAUUAG	chr5:65449179-65449430(+)$1	251	54	83	14.8035
GGCUGGUGGCUUUUAUUUCAGGGUGAACC	chr11:243914-244198(+)$1	284	225	254	13.0532
GGAGCACAAAGAAGACACAUUCGAUGUGU	chr19:19105127-19105407(-)$1	280	154	183	10.4059
GAAACAUUCUCAAUUGUACUUGGGUGUGA	chr17:61877730-61877997(+)$1	267	44	73	13.5068
CUCGUCUCAAGUUGUAUAAAGUUGUCUCC	chr19:54972712-54972964(+)$1	252	22	51	11.5652
UAUUUGAUUUUUUUUCCUCAAAAGGUCaa	chr4:6825799-6826051(+)$1	252	30	59	12.1297
UAUUUCAAAUUGUGUUGAACAAAUUUGAU	chrX:110928095-110928329(+)$1	234	56	85	10.1028
UGUAAUUUUUGCAUUUGCUUGCAGAACCA	chr6:83896632-83896906(-)$1	274	28	57	15.2189
ACAGAGCCUGGGACUCCUUUCUCCGCUGA	chrX:16186865-16187130(-)$1	265	110	139	13.8567
UUUUUUCCAUUUGGCAGGAAUGGGAGUAC	chr14:20825696-20825936(+)$1	240	83	112	11.0216

#DB
.)))(((((((.(......))))))))((	chr14:35786333-35786628(+)$1	1	168	197	11.1558
(.((((.(((((......))))).)))).	chr7:141450017-141450261(+)$1	1	84	113	10.2544
((((.....((((......))))..))))	chr1:155883864-155884099(-)$1	1	152	181	11.2288
.(((.(((((.((......))))))).))	chr17:45258831-45259118(-)$1	1	123	152	13.0439
(((....((((((......))))))..))	chr16:71841908-71842164(-)$1	1	30	59	11.6348
.(((((((((.........))))))))).	chr21:30339293-30339617(-)$1	1	132	161	10.2342
((((..(((((((......))))))).))	chr12:132199018-132199291(+)$1	1	211	240	13.6440
..((((((((((.........))))))))	chr9:37186595-37186848(+)$1	1	140	169	11.0033
.((((((((((.(......))))).))))	chr14:104153304-104153585(+)$1	1	159	188	11.6124
)((..(((...((......))...)))..	chr1:10241117-10241370(+)$1	1	220	249	12.5464
(((((((((..((.....))..)))))))	chr4:164440372-164440622(+)$1	1	2	31	10.6777
..((((....(((((......)))))...	chr5:95226588-95226861(-)$1	1	65	94	10.5035
((...((((((((......)))))))).)	chr5:65465769-65466057(+)$1	1	37	66	11.2943
((((((...((((......))))...)))	chr20:57242434-57242715(+)$1	1	237	266	12.3462
...(...(((.((.....)).)))...).	chr19:54972703-54972912(+)$1	1	31	60	11.5652
((((((...((((......))))..))))	chr2:198284817-198285068(-)$1	1	154	183	13.0122
.((...(((((((......)))))))...	chr7:23561898-23562160(-)$1	1	132	161	13.5713
(.(....(((((((....)))))))..).	chr7:86817281-86817540(+)$1	1	79	108	9.6931
(((((((((((.(......).))))))))	chr2:20526990-20527251(-)$1	1	53	82	14.2846
.((((((((((((.........)))))))	chr17:34161472-34161716(+)$1	1	157	186	10.5629
((((.(((..(((......)))))).)))	chr11:3765729-3765981(-)$1	1	46	75	12.4575
(((((((.((.((......)).)))))))	chr2:210884280-210884529(+)$1	1	190	219	12.4597
...(.(((((.........))))).)...	chr9:134305368-134305621(+)$1	1	169	198	9.8849
..(((.(((((((......))))))))))	chrX:151138734-151138988(-)$1	1	0	29	12.0251
)((((((.(((((......)))).).)))	chr11:799849-800127(-)$1	1	222	251	11.6119
(.((((((((.((......)).)))))..	chr3:9516640-9516902(+)$1	1	197	226	12.5392
...(((((...((......))))))))))	chr7:86792447-86792705(+)$1	1	165	194	13.0778
..((((...((((......)))).)))).	chr3:9475410-9475662(+)$1	1	75	104	12.5970
...((((...(((......)))..)))).	chr1:100964352-100964634(+)$1	1	35	64	12.7581
...(((.((((.(......).))))))).	chrX:12994161-12994411(+)$1	1	135	164	13.3063
(((....((((((......)).))))...	chr14:23794343-23794594(+)$1	1	112	141	13.2673
))))))(((((((......))))))).((	chr1:67405592-67405863(+)$1	1	211	240	11.7353
...(((((((.((...)).)))))))..)	chr17:46053138-46053373(+)$1	1	27	56	10.0922
((((.....((((......))))))))))	chr12:69667903-69668195(+)$1	1	145	174	12.8779
(((....((((((......))))))..))	chr4:140037816-140038072(-)$1	1	32	61	12.1634
..((...((..((......))..))..))	chr15:63922670-63922941(-)$1	1	133	162	11.9281
..(((.(((..((....)).))).)))..	chr18:12986713-12987052(+)$1	1	184	213	8.8128
))))))).)))((......)).(((((((	chr6:31730650-31730925(+)$1	1	125	154	12.6601
(((....((((((......))))))...)	chr2:39519835-39520071(-)$1	1	83	112	13.2552
..((((((((..(......)..)))))).	chr4:79791818-79792068(+)$1	1	136	165	12.0716
)))((((((.(((......))))))))).	chr17:25631694-25631954(+)$1	1	174	203	11.0546
.(.(((((...(((...))).))))).).	chr5:179045173-179045414(-)$1	1	90	119	9.1063
((..(((..((((......))))))).))	chr20:60755112-60755400(+)$1	1	168	197	12.7506
((.((((..((((......))))))))..	chr5:176696481-176696744(+)$1	1	145	174	11.9004
(((((((((((((......)))))))...	chr9:95015607-95015837(-)$1	1	1	30	14.1810
..(((((((..((......))))))))).	chr5:65449179-65449430(+)$1	1	54	83	14.8035
((....(.(((((......))))).)..)	chr11:243914-244198(+)$1	1	225	254	13.0532
((((((((..(((......)))..)))))	chr19:19105127-19105407(-)$1	1	154	183	10.4059
....(((.(((((......))))).))).	chr17:61877730-61877997(+)$1	1	44	73	13.5068
...(...(((.((.....)).)))...).	chr19:54972712-54972964(+)$1	1	22	51	11.5652
...((((((((((......))))))))))	chr4:6825799-6826051(+)$1	1	30	59	12.1297
((..(((((((((.....)).))))))).	chrX:110928095-110928329(+)$1	1	56	85	10.1028
(((...(((((((......)))))))...	chr6:83896632-83896906(-)$1	1	28	57	15.2189
(...(((..((((......)))).)))..	chrX:16186865-16187130(-)$1	1	110	139	13.8567
...(((((((((.....)))))))))...	chr14:20825696-20825936(+)$1	1	83	112	11.0216

#PSSM
" : 0.12	f : 0.10	# : 0.10	c : 0.10	[ : 0.07	e : 0.07	! : 0.07	b : 0.05	d : 0.05	g : 0.05	: : 0.05	= : 0.03	] : 0.01	E : 0.01	i : 0.01	h : 0.01	
f : 0.14	" : 0.14	c : 0.12	# : 0.09	! : 0.07	[ : 0.05	b : 0.05	= : 0.05	g : 0.05	e : 0.05	d : 0.03	i : 0.03	: : 0.03	a : 0.01	h : 0.01	
c : 0.14	f : 0.12	" : 0.12	# : 0.09	d : 0.07	= : 0.07	b : 0.07	g : 0.07	i : 0.05	e : 0.03	[ : 0.03	! : 0.03	a : 0.01	h : 0.01	: : 0.01	
c : 0.12	# : 0.12	f : 0.10	d : 0.09	= : 0.09	g : 0.09	i : 0.07	" : 0.07	! : 0.05	a : 0.05	e : 0.05	b : 0.03	h : 0.01	
c : 0.14	g : 0.12	# : 0.10	" : 0.10	d : 0.09	= : 0.09	f : 0.09	[ : 0.05	i : 0.05	$ : 0.03	! : 0.03	e : 0.03	h : 0.01	
g : 0.12	c : 0.12	# : 0.10	d : 0.09	e : 0.09	= : 0.09	f : 0.09	" : 0.09	i : 0.05	$ : 0.03	h : 0.03	[ : 0.03	! : 0.01	
g : 0.20	# : 0.10	c : 0.10	" : 0.10	e : 0.09	= : 0.09	f : 0.07	i : 0.05	[ : 0.03	$ : 0.03	h : 0.03	d : 0.03	a : 0.01	
g : 0.20	e : 0.10	f : 0.09	c : 0.09	= : 0.07	" : 0.07	[ : 0.07	i : 0.05	d : 0.05	! : 0.05	$ : 0.03	h : 0.03	# : 0.01	b : 0.01	] : 0.01	
g : 0.20	" : 0.12	e : 0.10	f : 0.09	! : 0.09	= : 0.07	c : 0.07	i : 0.05	d : 0.05	$ : 0.03	b : 0.03	# : 0.01	h : 0.01	a : 0.01	
d : 0.21	g : 0.18	e : 0.10	! : 0.10	f : 0.07	" : 0.07	i : 0.05	= : 0.05	c : 0.05	# : 0.01	h : 0.01	b : 0.01	[ : 0.01	
d : 0.21	g : 0.16	[ : 0.10	! : 0.09	c : 0.09	e : 0.07	f : 0.05	= : 0.05	" : 0.05	r : 0.03	i : 0.03	h : 0.01	
b : 0.27	d : 0.16	g : 0.12	c : 0.09	[ : 0.07	e : 0.07	f : 0.05	= : 0.05	r : 0.03	h : 0.01	! : 0.01	i : 0.01	
b : 0.27	d : 0.16	g : 0.12	a : 0.09	c : 0.09	f : 0.05	r : 0.05	e : 0.05	= : 0.03	o : 0.01	h : 0.01	n : 0.01	
o : 0.74	n : 0.09	r : 0.07	e : 0.01	g : 0.01	l : 0.01	m : 0.01	c : 0.01	
o : 0.74	n : 0.09	r : 0.07	m : 0.03	l : 0.03	e : 0.01	
o : 0.76	n : 0.09	r : 0.07	m : 0.03	l : 0.03	
o : 0.76	n : 0.09	r : 0.07	m : 0.03	b : 0.01	l : 0.01	
o : 0.76	r : 0.07	n : 0.07	b : 0.03	m : 0.01	c : 0.01	i : 0.01	
o : 0.74	b : 0.09	r : 0.07	e : 0.01	g : 0.01	] : 0.01	c : 0.01	i : 0.01	
b : 0.23	d : 0.16	g : 0.14	a : 0.09	c : 0.09	e : 0.07	f : 0.05	i : 0.03	r : 0.03	o : 0.01	h : 0.01	] : 0.01	= : 0.01	
d : 0.18	g : 0.16	b : 0.16	] : 0.10	c : 0.09	e : 0.07	f : 0.05	i : 0.03	r : 0.03	2 : 0.03	o : 0.01	h : 0.01	= : 0.01	
g : 0.20	d : 0.20	e : 0.14	c : 0.12	f : 0.05	i : 0.05	2 : 0.05	] : 0.05	= : 0.03	3 : 0.01	h : 0.01	r : 0.01	: : 0.01	
g : 0.21	d : 0.21	e : 0.16	f : 0.09	= : 0.07	c : 0.07	i : 0.05	2 : 0.05	3 : 0.01	h : 0.01	b : 0.01	
g : 0.21	e : 0.14	] : 0.09	f : 0.09	2 : 0.07	i : 0.07	= : 0.07	d : 0.07	c : 0.07	3 : 0.03	b : 0.03	h : 0.01	
g : 0.23	d : 0.10	e : 0.09	f : 0.09	c : 0.09	i : 0.07	= : 0.07	] : 0.07	3 : 0.05	2 : 0.03	h : 0.03	a : 0.01	b : 0.01	
g : 0.23	c : 0.10	d : 0.09	e : 0.09	f : 0.07	2 : 0.07	i : 0.07	= : 0.07	3 : 0.07	h : 0.03	] : 0.03	a : 0.03	
3 : 0.14	c : 0.12	g : 0.10	f : 0.10	2 : 0.10	d : 0.07	] : 0.07	= : 0.07	i : 0.05	h : 0.03	4 : 0.03	e : 0.03	: : 0.01	
f : 0.14	3 : 0.12	c : 0.09	2 : 0.09	g : 0.09	d : 0.07	= : 0.07	a : 0.07	i : 0.05	4 : 0.05	e : 0.03	b : 0.03	C : 0.01	] : 0.01	h : 0.01	
] : 0.18	f : 0.12	3 : 0.10	c : 0.09	2 : 0.09	= : 0.07	4 : 0.07	g : 0.05	i : 0.05	e : 0.03	b : 0.03	C : 0.01	d : 0.01	: : 0.01	h : 0.01	

#score	660.1104831813099
#seq	55
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_UTR_m3_run2.txt

#BEAR
iiiiyyyyyyyyyyyyyyyyiiii	chr7:133976512-133976817(-)$1	305	164	188	21.5730
::dddduuuuuuuuuuuuddddee	chr17:40353217-40353478(-)$1	261	188	212	20.6427
d:eeeeettttttttttteeeee:	chr1:183522495-183522755(+)$1	260	186	210	19.7520
ddddyyyyyyyyyyyyyyyydddd	chr8:21995446-21995717(-)$1	271	158	182	20.1982
gggggguuuuuuuuuuuugggggg	chr9:72330046-72330311(-)$1	265	1	25	24.0108
f[bbwwwwwwwwwwwwwwbb]fff	chr11:6541609-6541908(+)$1	299	176	200	21.0057
ddddwwwwwwwwwwwwwwddddee	chr5:154238687-154238962(+)$1	275	170	194	20.8308
a[cccvvvvvvvvvvvvvccc]a]	chr1:27107177-27107408(+)$1	231	159	183	23.3165
(eeeeeuuuuuuuuuuuueeeeec	chr17:40463045-40463323(+)$1	278	100	124	22.4567
ffffffvvvvvvvvvvvvvfffff	chr17:79531062-79531324(-)$1	262	11	35	22.5141
hh[bbvvvvvvvvvvvvvbb]hhh	chr11:35827850-35828090(+)$1	240	205	229	21.9530
eeeeevvvvvvvvvvvvveeeee]	chr20:49199969-49200236(+)$1	267	66	90	22.7086
ccddddtttttttttttdddd:FF	chr1:21100554-21100802(-)$1	248	22	46	19.9602
dddd[bbtttttttttttbb]ddd	chr20:46283505-46283792(+)$1	287	80	104	20.9328
[eeeeettttttttttteeeee]e	chr10:3821308-3821552(-)$1	244	81	105	22.2150
ggggggtttttttttttggggggg	chr7:4810431-4810715(+)$1	284	25	49	22.8266
!!cccvvvvvvvvvvvvvccc]ee	chr11:66367754-66368058(+)$1	304	185	209	23.3572
fffffftttttttttttffffff:	chr21:44269321-44269559(-)$1	238	212	236	21.0864
eeeccctttttttttttccc]eee	chr17:4862473-4862766(-)$1	293	182	206	22.7301
hhhhhhuuuuuuuuuuuuhhhhhh	chr8:21862926-21863240(+)$1	314	175	199	21.6750
ffffffvvvvvvvvvvvvvfffff	chr2:175938012-175938244(-)$1	232	129	153	22.5141
a[cccvvvvvvvvvvvvvccc]a]	chr1:27107208-27107468(+)$1	260	128	152	23.3165
dd[ccctttttttttttccc]ddd	chr1:44445723-44445977(+)$1	254	99	123	22.2786
h[dddduuuuuuuuuuuudddd]h	chr17:75495631-75495905(+)$1	274	215	239	22.9621
ffffffwwwwwwwwwwwwwwffff	chr1:59124495-59124760(-)$1	265	202	226	21.1704
!eeeeettttttttttteeeee]f	chr4:142155080-142155365(+)$1	285	118	142	22.2411
gggccctttttttttttccc]ggg	chr17:76220243-76220507(+)$1	264	201	225	23.3674
eeeewwwwwwwwwwwwwweeeee:	chr20:34329949-34330289(-)$1	340	232	256	20.4060
ee[bbvvvvvvvvvvvvvbb]eee	chr4:2070240-2070514(+)$1	274	215	239	22.3172
ffffffuuuuuuuuuuuuffffff	chr7:149186166-149186483(-)$1	317	275	299	23.1136
======uuuuuuuuuuuu======	chr4:6882827-6883095(+)$1	268	168	192	24.0315
ggggggtttttttttttggggggg	chr10:85912246-85912538(+)$1	292	210	234	22.8266
ffdddduuuuuuuuuuuudddd]f	chr8:21863489-21863785(+)$1	296	254	278	22.9740
iiiiivvvvvvvvvvvvviiiiii	chr10:94111580-94111869(+)$1	289	157	181	23.4610
ffeeeeettttttttttteeeee:	chr16:69733648-69733931(+)$1	283	168	192	20.9690
gggggwwwwwwwwwwwwwwggggg	chr19:1508595-1508900(-)$1	305	279	303	22.3857
==yyyyyyyyyyyyyyyy======	chr12:125605246-125605540(+)$1	294	75	99	21.0038
ffffffuuuuuuuuuuuuffffff	chr2:97525870-97526169(-)$1	299	91	115	23.1136
ffffffuuuuuuuuuuuuffffff	chr15:56991715-56992081(-)$1	366	72	96	23.1136
h!!cccuuuuuuuuuuuuccc]hh	chr12:110785272-110785537(+)$1	265	20	44	23.6545
ii[cccuuuuuuuuuuuuccc]ii	chr9:37919142-37919419(-)$1	277	124	148	24.1407
gggggwwwwwwwwwwwwwwggggg	chr1:246829636-246829902(+)$1	266	70	94	22.3857
hhhh[auuuuuuuuuuuua]hhhh	chr1:160967430-160967688(-)$1	258	208	232	22.6612
###ddddtttttttttttdddd22	chr2:87004521-87004783(+)$1	262	125	149	20.8872
ccc[bbwwwwwwwwwwwwwwbb]c	chr17:38613558-38613826(+)$1	268	69	93	20.5307
ddd[bbuuuuuuuuuuuubb]ddd	chr17:37075998-37076218(+)$1	220	115	139	22.2026
b[eeeeettttttttttteeeeeb	chr1:15392208-15392554(+)$1	346	37	61	21.6642
ffffffwwwwwwwwwwwwwwffff	chr2:232577058-232577322(+)$1	264	87	111	21.1704
gggggguuuuuuuuuuuugggggg	chr12:123779998-123780291(-)$1	293	222	246	24.0108
####ccctttttttttttccc555	chr7:26252110-26252366(+)$1	256	205	229	19.3385
fffyyyyyyyyyyyyyyyyfffff	chr2:8996288-8996574(-)$1	286	219	243	20.9160
b[dddduuuuuuuuuuuudddd]b	chr19:2715827-2716175(-)$1	348	129	153	22.7370
gggggvvvvvvvvvvvvvgggggg	chr4:17885112-17885415(-)$1	303	10	34	23.5823
cccyyyyyyyyyyyyyyyyccc]b	chr10:52514582-52514853(+)$1	271	124	148	20.9824
ffffffwwwwwwwwwwwwwwffff	chr10:65383430-65383710(+)$1	280	129	153	21.1704
ggg[ccctttttttttttcccggg	chr15:77338318-77338620(-)$1	302	248	272	23.0796
[a!!bbtttttttttttbb22a]b	chr9:5127992-5128251(+)$1	259	18	42	21.2605
ggggggtttttttttttggggggg	chr2:61763370-61763580(-)$1	210	1	25	22.8266
h[ddddtttttttttttddddhhh	chr16:84157521-84157786(-)$1	265	65	89	21.5965
iiiiiiitttttttttttiiiiii	chr16:58195255-58195554(-)$1	299	224	248	22.3517

#otherMatches

#Seq PSSM
UAUUUGAAUUGUAUUAGCUUAAUG	chr7:133976512-133976817(-)$1	305	164	188	21.5730
UUGAUAUAUAACCGUGAUUGUCUC	chr17:40353217-40353478(-)$1	261	188	212	20.6427
CAACCCCAGCAAUGAAAAGGGGUG	chr1:183522495-183522755(+)$1	260	186	210	19.7520
UUUUGAUAAAUAAAUACAUAAAGG	chr8:21995446-21995717(-)$1	271	158	182	20.1982
cauuaaauauuuauuaaauuaaug	chr9:72330046-72330311(-)$1	265	1	25	24.0108
UGAUUCAUCCCAAACUCUGUGAGG	chr11:6541609-6541908(+)$1	299	176	200	21.0057
CCUGAAUUUGGAAUCUUGCGGGCC	chr5:154238687-154238962(+)$1	275	170	194	20.8308
CUCAGAAUCCAGUUUACCCUGUGC	chr1:27107177-27107408(+)$1	231	159	183	23.3165
gUGUGUGGGUCUAUGUAAAUGCAU	chr17:40463045-40463323(+)$1	278	100	124	22.4567
uuauuuguuuguuuuuuaaaaaua	chr17:79531062-79531324(-)$1	262	11	35	22.5141
GUCCCCAGAUCCACAGCAGGCACA	chr11:35827850-35828090(+)$1	240	205	229	21.9530
AUGCAUGUAAGGUCUUCUUGUGUC	chr20:49199969-49200236(+)$1	267	66	90	22.7086
aagcuguccucccuccucagccuc	chr1:21100554-21100802(-)$1	248	22	46	19.9602
CAUGGGCuguguguguguguguau	chr20:46283505-46283792(+)$1	287	80	104	20.9328
GAGCAUGCACACUGAGAAUGCUAA	chr10:3821308-3821552(-)$1	244	81	105	22.2150
CUCCUGUAAAAAUAAUUUGGGAGG	chr7:4810431-4810715(+)$1	284	25	49	22.8266
CUGUUUCCUUUCUUUCUUAGCUGU	chr11:66367754-66368058(+)$1	304	185	209	23.3572
CAGGCAAAACUCCUUGGUGCCUGC	chr21:44269321-44269559(-)$1	238	212	236	21.0864
UCUUGGAAUUUUCUUCCCCAUGGG	chr17:4862473-4862766(-)$1	293	182	206	22.7301
AUGUGUGAGAGUGCAGAGAUAUAU	chr8:21862926-21863240(+)$1	314	175	199	21.6750
GAUGAUUGCAGUUUAAAAUGUCAU	chr2:175938012-175938244(-)$1	232	129	153	22.5141
CUCAGAAUCCAGUUUACCCUGUGC	chr1:27107208-27107468(+)$1	260	128	152	23.3165
GAUUCUGUGUGCCUGUGAGACUCA	chr1:44445723-44445977(+)$1	254	99	123	22.2786
CCCAGGCCUUGCUGACUCUCUGAG	chr17:75495631-75495905(+)$1	274	215	239	22.9621
AUUCUCCAACCCUUGAUCUAGAGA	chr1:59124495-59124760(-)$1	265	202	226	21.1704
AUGAAUUGUGUGUGGUUGUUCAAA	chr4:142155080-142155365(+)$1	285	118	142	22.2411
GCUCCUCCCUCAGAAAAAGGCAGU	chr17:76220243-76220507(+)$1	264	201	225	23.3674
CUAAUUCCAUUGUUUUUUUUAGAU	chr20:34329949-34330289(-)$1	340	232	256	20.4060
CCUGCUCACGGCUUCCCUGCUGGG	chr4:2070240-2070514(+)$1	274	215	239	22.3172
gcuguaaacaauauauaauacggu	chr7:149186166-149186483(-)$1	317	275	299	23.1136
GCAGUUAAUUUUCCUUCCGACUGC	chr4:6882827-6883095(+)$1	268	168	192	24.0315
UUGCAUAUUUUUUUGGAGUGCAGA	chr10:85912246-85912538(+)$1	292	210	234	22.8266
uuuuauaaaaugaaaaccauaaua	chr8:21863489-21863785(+)$1	296	254	278	22.9740
GGAGUUUUUUCAACCCAUAUUUCU	chr10:94111580-94111869(+)$1	289	157	181	23.4610
GGGUGACGAUAAUUCAAAGUCAUA	chr16:69733648-69733931(+)$1	283	168	192	20.9690
GGACUGGAGCUCGAACAGGGGUCC	chr19:1508595-1508900(-)$1	305	279	303	22.3857
caaaaguguaugugaaagugugug	chr12:125605246-125605540(+)$1	294	75	99	21.0038
guguguuugucuguauuugcacau	chr2:97525870-97526169(-)$1	299	91	115	23.1136
gaauguguguuuuuuaaaauauuc	chr15:56991715-56992081(-)$1	366	72	96	23.1136
AGGCACUAAUUGUCAUCUGUGAUG	chr12:110785272-110785537(+)$1	265	20	44	23.6545
gAGUACAGAUGUGAGAAGGUGGUC	chr9:37919142-37919419(-)$1	277	124	148	24.1407
ACUUCUGUUCUCCACUUAUGAAGU	chr1:246829636-246829902(+)$1	266	70	94	22.3857
UUUUGUGGGAAGUAAGUAGGGGAA	chr1:160967430-160967688(-)$1	258	208	232	22.6612
UCUGUGUUUUCUAAACUUACACUA	chr2:87004521-87004783(+)$1	262	125	149	20.8872
GCAGUCAGGGUGGGAAGAAAGAAU	chr17:38613558-38613826(+)$1	268	69	93	20.5307
CACGCAAGUGUGUGAGUGUGAGUG	chr17:37075998-37076218(+)$1	220	115	139	22.2026
GAUGGUACCGCCCCUGAUUAUUAC	chr1:15392208-15392554(+)$1	346	37	61	21.6642
UCUCCAGGUGAGGAAGAGGAUGGA	chr2:232577058-232577322(+)$1	264	87	111	21.1704
GCAGUACAUCCAUGCCAUUGCUGU	chr12:123779998-123780291(-)$1	293	222	246	24.0108
GAGAUGCCAUUAUUCCAAGCAAAA	chr7:26252110-26252366(+)$1	256	205	229	19.3385
CUGUUACCUGUUUCUUGCUCAGUG	chr2:8996288-8996574(-)$1	286	219	243	20.9160
CUUGUAUCUAAGUGCAUCUGCGUG	chr19:2715827-2716175(-)$1	348	129	153	22.7370
GGGUUAUAUAAUAUGACAGAUUCA	chr4:17885112-17885415(-)$1	303	10	34	23.5823
agagagagagagagagagGUUUGU	chr10:52514582-52514853(+)$1	271	124	148	20.9824
UUUGGCUAAAAAAUUAUACUGCCA	chr10:65383430-65383710(+)$1	280	129	153	21.1704
CAACAUAUUAUUUUUCAUUAUUUG	chr15:77338318-77338620(-)$1	302	248	272	23.0796
UCGUUGUUGUCAUUUGUUAUAGUG	chr9:5127992-5128251(+)$1	259	18	42	21.2605
GAUAAUCCCUAGUGUAUGUUAUCC	chr2:61763370-61763580(-)$1	210	1	25	22.8266
AAUGCUGCACUUCAACUGGUAUUU	chr16:84157521-84157786(-)$1	265	65	89	21.5965
UUGUUUGCUUCAUUAUCUUAAACA	chr16:58195255-58195554(-)$1	299	224	248	22.3517

#DB
((((................))))	chr7:133976512-133976817(-)$1	1	164	188	21.5730
..((((............))))((	chr17:40353217-40353478(-)$1	1	188	212	20.6427
).(((((...........))))).	chr1:183522495-183522755(+)$1	1	186	210	19.7520
((((................))))	chr8:21995446-21995717(-)$1	1	158	182	20.1982
((((((............))))))	chr9:72330046-72330311(-)$1	1	1	25	24.0108
(.((..............)).)))	chr11:6541609-6541908(+)$1	1	176	200	21.0057
((((..............))))))	chr5:154238687-154238962(+)$1	1	170	194	20.8308
(.(((.............))).).	chr1:27107177-27107408(+)$1	1	159	183	23.3165
.(((((............))))))	chr17:40463045-40463323(+)$1	1	100	124	22.4567
((((((.............)))))	chr17:79531062-79531324(-)$1	1	11	35	22.5141
((.((.............)).)))	chr11:35827850-35828090(+)$1	1	205	229	21.9530
(((((.............))))).	chr20:49199969-49200236(+)$1	1	66	90	22.7086
))((((...........)))).((	chr1:21100554-21100802(-)$1	1	22	46	19.9602
((((.((...........)).)))	chr20:46283505-46283792(+)$1	1	80	104	20.9328
.(((((...........))))).)	chr10:3821308-3821552(-)$1	1	81	105	22.2150
((((((...........)))))))	chr7:4810431-4810715(+)$1	1	25	49	22.8266
..(((.............))).))	chr11:66367754-66368058(+)$1	1	185	209	23.3572
((((((...........)))))).	chr21:44269321-44269559(-)$1	1	212	236	21.0864
((((((...........))).)))	chr17:4862473-4862766(-)$1	1	182	206	22.7301
((((((............))))))	chr8:21862926-21863240(+)$1	1	175	199	21.6750
((((((.............)))))	chr2:175938012-175938244(-)$1	1	129	153	22.5141
(.(((.............))).).	chr1:27107208-27107468(+)$1	1	128	152	23.3165
((.(((...........))).)))	chr1:44445723-44445977(+)$1	1	99	123	22.2786
(.((((............)))).)	chr17:75495631-75495905(+)$1	1	215	239	22.9621
((((((..............))))	chr1:59124495-59124760(-)$1	1	202	226	21.1704
.(((((...........))))).)	chr4:142155080-142155365(+)$1	1	118	142	22.2411
((((((...........))).)))	chr17:76220243-76220507(+)$1	1	201	225	23.3674
((((..............))))).	chr20:34329949-34330289(-)$1	1	232	256	20.4060
((.((.............)).)))	chr4:2070240-2070514(+)$1	1	215	239	22.3172
((((((............))))))	chr7:149186166-149186483(-)$1	1	275	299	23.1136
((((((............))))))	chr4:6882827-6883095(+)$1	1	168	192	24.0315
((((((...........)))))))	chr10:85912246-85912538(+)$1	1	210	234	22.8266
((((((............)))).)	chr8:21863489-21863785(+)$1	1	254	278	22.9740
(((((.............))))))	chr10:94111580-94111869(+)$1	1	157	181	23.4610
))(((((...........))))).	chr16:69733648-69733931(+)$1	1	168	192	20.9690
(((((..............)))))	chr19:1508595-1508900(-)$1	1	279	303	22.3857
((................))))))	chr12:125605246-125605540(+)$1	1	75	99	21.0038
((((((............))))))	chr2:97525870-97526169(-)$1	1	91	115	23.1136
((((((............))))))	chr15:56991715-56992081(-)$1	1	72	96	23.1136
(..(((............))).))	chr12:110785272-110785537(+)$1	1	20	44	23.6545
((.(((............))).))	chr9:37919142-37919419(-)$1	1	124	148	24.1407
(((((..............)))))	chr1:246829636-246829902(+)$1	1	70	94	22.3857
((((.(............).))))	chr1:160967430-160967688(-)$1	1	208	232	22.6612
...((((...........))))..	chr2:87004521-87004783(+)$1	1	125	149	20.8872
(((.((..............)).)	chr17:38613558-38613826(+)$1	1	69	93	20.5307
(((.((............)).)))	chr17:37075998-37076218(+)$1	1	115	139	22.2026
(.(((((...........))))))	chr1:15392208-15392554(+)$1	1	37	61	21.6642
((((((..............))))	chr2:232577058-232577322(+)$1	1	87	111	21.1704
((((((............))))))	chr12:123779998-123780291(-)$1	1	222	246	24.0108
....(((...........)))...	chr7:26252110-26252366(+)$1	1	205	229	19.3385
(((................)))))	chr2:8996288-8996574(-)$1	1	219	243	20.9160
(.((((............)))).)	chr19:2715827-2716175(-)$1	1	129	153	22.7370
(((((.............))))))	chr4:17885112-17885415(-)$1	1	10	34	23.5823
(((................))).)	chr10:52514582-52514853(+)$1	1	124	148	20.9824
((((((..............))))	chr10:65383430-65383710(+)$1	1	129	153	21.1704
(((.(((...........))))))	chr15:77338318-77338620(-)$1	1	248	272	23.0796
.(..((...........))..).)	chr9:5127992-5128251(+)$1	1	18	42	21.2605
((((((...........)))))))	chr2:61763370-61763580(-)$1	1	1	25	22.8266
(.((((...........)))))))	chr16:84157521-84157786(-)$1	1	65	89	21.5965
(((((((...........))))))	chr16:58195255-58195554(-)$1	1	224	248	22.3517

#PSSM
f : 0.21	g : 0.16	d : 0.09	h : 0.09	i : 0.06	e : 0.06	c : 0.05	a : 0.03	[ : 0.03	! : 0.03	= : 0.03	# : 0.03	b : 0.03	: : 0.01	( : 0.01	
f : 0.19	g : 0.16	[ : 0.11	e : 0.11	d : 0.08	i : 0.06	h : 0.05	c : 0.05	: : 0.03	! : 0.03	= : 0.03	# : 0.03	a : 0.01	
d : 0.16	g : 0.16	f : 0.16	e : 0.15	c : 0.08	[ : 0.06	i : 0.05	h : 0.03	! : 0.03	# : 0.03	b : 0.01	= : 0.01	y : 0.01	
d : 0.16	f : 0.15	e : 0.13	g : 0.13	c : 0.13	i : 0.05	b : 0.05	y : 0.05	[ : 0.05	h : 0.03	= : 0.01	# : 0.01	! : 0.01	
c : 0.16	f : 0.15	g : 0.13	d : 0.11	e : 0.11	y : 0.08	b : 0.08	w : 0.05	[ : 0.03	i : 0.03	h : 0.01	= : 0.01	
f : 0.15	v : 0.13	d : 0.11	c : 0.11	e : 0.09	y : 0.08	g : 0.08	w : 0.08	b : 0.06	h : 0.01	= : 0.01	a : 0.01	i : 0.01	
u : 0.26	t : 0.19	v : 0.16	w : 0.15	y : 0.08	e : 0.05	c : 0.03	b : 0.01	d : 0.01	i : 0.01	
t : 0.33	u : 0.26	v : 0.16	w : 0.15	y : 0.08	
t : 0.33	u : 0.26	v : 0.16	w : 0.15	y : 0.08	
t : 0.33	u : 0.26	v : 0.16	w : 0.15	y : 0.08	
t : 0.33	u : 0.26	v : 0.16	w : 0.15	y : 0.08	
t : 0.33	u : 0.26	v : 0.16	w : 0.15	y : 0.08	
t : 0.33	u : 0.26	v : 0.16	w : 0.15	y : 0.08	
t : 0.33	u : 0.26	v : 0.16	w : 0.15	y : 0.08	
t : 0.33	u : 0.26	v : 0.16	w : 0.15	y : 0.08	
t : 0.33	u : 0.26	v : 0.16	w : 0.15	y : 0.08	
t : 0.33	u : 0.26	v : 0.16	w : 0.15	y : 0.08	
u : 0.26	v : 0.16	w : 0.15	t : 0.13	y : 0.08	g : 0.05	c : 0.05	d : 0.03	e : 0.03	f : 0.01	b : 0.01	
c : 0.16	d : 0.13	e : 0.13	g : 0.09	b : 0.09	w : 0.09	y : 0.06	f : 0.06	v : 0.03	= : 0.03	i : 0.03	h : 0.01	a : 0.01	
c : 0.18	d : 0.13	e : 0.13	g : 0.13	f : 0.11	b : 0.08	w : 0.06	y : 0.03	= : 0.03	i : 0.03	h : 0.01	] : 0.01	2 : 0.01	
f : 0.16	d : 0.15	e : 0.13	g : 0.13	] : 0.13	c : 0.13	i : 0.05	h : 0.03	= : 0.03	b : 0.01	2 : 0.01	
f : 0.18	d : 0.16	e : 0.16	g : 0.16	] : 0.08	h : 0.06	i : 0.05	= : 0.03	: : 0.01	b : 0.01	5 : 0.01	c : 0.01	a : 0.01	
e : 0.18	f : 0.18	g : 0.16	] : 0.13	h : 0.08	i : 0.06	d : 0.06	a : 0.03	= : 0.03	F : 0.01	2 : 0.01	5 : 0.01	
f : 0.19	g : 0.16	e : 0.09	h : 0.09	i : 0.06	: : 0.06	d : 0.06	b : 0.06	] : 0.05	c : 0.03	= : 0.03	F : 0.01	2 : 0.01	5 : 0.01	

#score	1326.4633056857538
#seq	60
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_UTR_m3_run1.txt

#BEAR
======qqqqqqqq======	chr7:128409627-128409854(+)$1	227	134	154	14.7523
ffffffqqqqqqqqffffff	chr7:4804124-4804367(+)$1	243	2	22	13.8218
ffffffqqqqqqqqffffff	chr1:145441563-145441916(+)$1	353	119	139	13.8218
bb[cccqqqqqqqqccc22b	chr2:86254134-86254422(-)$1	288	202	222	13.6632
e[ddddqqqqqqqqdddd]e	chr12:131361370-131361636(+)$1	266	121	141	14.4698
!eeeeeqqqqqqqqeeeee2	chr12:56365856-56366160(+)$1	304	206	226	14.9690
[eeeeeqqqqqqqqeeeee6	chr17:73702612-73702894(+)$1	282	74	94	14.7111
ggggggqqqqqqqqgggggg	chr1:65692410-65692675(+)$1	265	1	21	14.5525
iiiiiiqqqqqqqqiiiiii	chr19:7535643-7535933(+)$1	290	228	248	14.4156
[eeeeeqqqqqqqqeeeeeb	chr19:18475256-18475512(+)$1	256	105	125	14.8583
:eeeeeqqqqqqqqeeeee:	chr5:78075433-78075694(-)$1	261	214	234	13.2204
d[ddddqqqqqqqqdddd]d	chr14:99981284-99981570(-)$1	286	92	112	14.4534
ggggggqqqqqqqqgggggg	chr16:30435190-30435470(-)$1	280	22	42	14.5525
ceeeeeqqqqqqqqeeeee>	chr10:82033251-82033486(-)$1	235	177	197	14.8221
ddd[bbqqqqqqqqbbdddd	chr2:128950336-128950608(+)$1	272	29	49	13.0788
:eeeeeqqqqqqqqeeeee:	chr19:18679414-18679696(+)$1	282	221	241	13.2204
ee"""aqqqqqqqqa]eeee	chr17:76167912-76168163(+)$1	251	89	109	14.2198
iiiiiiqqqqqqqqiiiiii	chr3:127340917-127341230(+)$1	313	115	135	14.4156
ffffffqqqqqqqqffffff	chr9:138395886-138396175(+)$1	289	201	221	13.8218
b!!cccqqqqqqqqccc22b	chr7:6502166-6502439(-)$1	273	62	82	14.1311
ggggggqqqqqqqqgggggg	chr16:85009419-85009695(-)$1	276	183	203	14.5525
!!ddddqqqqqqqqdddd]d	chr2:97525585-97525806(-)$1	221	112	132	14.6432
dddcccqqqqqqqqccc]dd	chr17:61896097-61896449(+)$1	352	244	264	14.1938
ccbb[aqqqqqqqqa]bb]c	chr17:75495637-75495901(+)$1	264	79	99	13.2419
"eeeeeqqqqqqqqeeeee4	chr1:150238321-150238584(-)$1	263	18	38	15.0486
ffffffqqqqqqqqffffff	chr21:46270481-46270710(-)$1	229	90	110	13.8218
###cccqqqqqqqqccc333	chr2:242511861-242512122(+)$1	261	187	207	14.7237
:eeeeeqqqqqqqqeeeee:	chr17:79687351-79687627(+)$1	276	103	123	13.2204
gg[cccqqqqqqqqccc22g	chr19:10427336-10427582(-)$1	246	11	31	14.4840
d!!bbaqqqqqqqqa]bb44	chr11:57584701-57584945(+)$1	244	137	157	13.4204
ceeeeeqqqqqqqqeeeee]	chr1:33789970-33790240(-)$1	270	73	93	15.0003
eee[bbqqqqqqqqbb]eee	chr19:3123743-3123984(+)$1	241	197	217	13.5043
""ddddqqqqqqqqdddd33	chr4:6709562-6709831(-)$1	269	239	259	14.6468
eeee[aqqqqqqqqa]eeee	chr8:22278388-22278664(+)$1	276	134	154	14.7156
Eeeeeeqqqqqqqqeeeee:	chr16:58059862-58060102(+)$1	240	131	151	13.2086
eeeeeeqqqqqqqqeeeee3	chr20:48569259-48569549(+)$1	290	56	76	15.0118
dddcccqqqqqqqqccc]dd	chr1:1375236-1375514(+)$1	278	209	229	14.1938
ffffffqqqqqqqqffffff	chr11:126072906-126073204(-)$1	298	79	99	13.8218
ddddbbqqqqqqqqbb]ddd	chr6:160101659-160101882(-)$1	223	105	125	13.0136
ffffffqqqqqqqqffffff	chr22:42981104-42981395(-)$1	291	213	233	13.8218
dddd[aqqqqqqqqa]dddd	chr17:43183838-43184133(+)$1	295	186	206	14.0977
dddd[aqqqqqqqqa]dddd	chr17:77758941-77759230(+)$1	289	208	228	14.0977
""ddddqqqqqqqqdddd33	chr14:24592995-24593249(+)$1	254	146	166	14.6468
ggggggqqqqqqqqgggggg	chr15:64448027-64448308(-)$1	281	127	147	14.5525
!!ddddqqqqqqqqdddd22	chr11:63971609-63971910(+)$1	301	74	94	14.4353
[eeeeeqqqqqqqqeeeee2	chr2:219140030-219140281(-)$1	251	119	139	14.9672
fccc[aqqqqqqqqaccc]f	chr5:180218214-180218568(-)$1	354	256	276	14.3858
ffffffqqqqqqqqffffff	chr19:47724516-47724838(-)$1	322	51	71	13.8218
======qqqqqqqq======	chr14:95058803-95059124(+)$1	321	269	289	14.7523
ddddddqqqqqqqqdddd33	chr2:241818188-241818519(+)$1	331	254	274	14.4015
b!!cccqqqqqqqqcccbbf	chr16:58195820-58196088(-)$1	268	226	246	13.7568
ffffffqqqqqqqqffffff	chr16:2820949-2821305(+)$1	356	209	229	13.8218
d[ddddqqqqqqqqdddd]d	chr22:38202431-38202671(+)$1	240	30	50	14.4534
ffffffqqqqqqqqffffff	chr16:30681391-30681757(+)$1	366	266	286	13.8218
ccc[bbqqqqqqqqbb]ccc	chr20:44978721-44978991(-)$1	270	87	107	13.0568
eeecccqqqqqqqqccc22e	chr10:71873531-71873826(-)$1	295	166	186	14.4008
a[ddddqqqqqqqqdddda]	chr17:40466484-40466776(-)$1	292	96	116	14.3772
[a[cccqqqqqqqqccca]c	chr3:48787744-48788040(-)$1	296	123	143	14.7456
ggggggqqqqqqqqgggggg	chr16:633106-633367(+)$1	261	36	56	14.5525
"""cccqqqqqqqqccc22b	chr1:150938143-150938403(-)$1	260	178	198	14.1790
ffffffqqqqqqqqffffff	chr8:28205756-28206061(-)$1	305	121	141	13.8218
e[ddddqqqqqqqqdddd]e	chr9:34370180-34370442(-)$1	262	92	112	14.4698
[eeeeeqqqqqqqqeeeee]	chr6:160102465-160102703(-)$1	238	29	49	15.1287
!!ddddqqqqqqqqdddd]d	chr3:128889104-128889345(-)$1	241	216	236	14.6432
ee[cccqqqqqqqqccceee	chr16:315661-315988(+)$1	327	289	309	14.7247
dddd[aqqqqqqqqa]dddd	chr9:131123126-131123475(+)$1	349	9	29	14.0977
d[ddddqqqqqqqqdddd]d	chr22:38615773-38616054(-)$1	281	107	127	14.4534
[eeeeeqqqqqqqqeeeeed	chr17:57279506-57279964(+)$1	458	344	364	14.9936
iiiiiiqqqqqqqqiiiiii	chr16:2226810-2227133(+)$1	323	145	165	14.4156
d!!cccqqqqqqqqccc22d	chr19:1038808-1039076(+)$1	268	168	188	14.4141
:eeeeeqqqqqqqqeeeee:	chr7:137563325-137563614(-)$1	289	3	23	13.2204
$eeeeeqqqqqqqqeeeee3	chr1:153579707-153580022(-)$1	315	72	92	14.8952
ggggggqqqqqqqqgggggg	chr10:101910748-101910996(-)$1	248	83	103	14.5525
heeeeeqqqqqqqqeeeee:	chr20:4680861-4681114(+)$1	253	48	68	13.9117
cc[cccqqqqqqqqcccccc	chr11:64533079-64533343(-)$1	264	124	144	14.4175

#otherMatches

#Seq PSSM
GUUGCUAUAGGUCCAGCAAC	chr7:128409627-128409854(+)$1	227	134	154	14.7523
GCCUGCUGUUGUCUGUGGGC	chr7:4804124-4804367(+)$1	243	2	22	13.8218
AACUUUGGGAAAAGGAGGUU	chr1:145441563-145441916(+)$1	353	119	139	13.8218
UCCUGAUUCACGAUUCACUG	chr2:86254134-86254422(-)$1	288	202	222	13.6632
UUUUGUAGGGCAGCACAGCA	chr12:131361370-131361636(+)$1	266	121	141	14.4698
AGGGAUUGUGCUUCAUUCCA	chr12:56365856-56366160(+)$1	304	206	226	14.9690
ACUGGGACCUACUCCCCAGA	chr17:73702612-73702894(+)$1	282	74	94	14.7111
UAGGAAUAACUCCUUUUCUA	chr1:65692410-65692675(+)$1	265	1	21	14.5525
AGGGGCUGACCUUUGCCCCU	chr19:7535643-7535933(+)$1	290	228	248	14.4156
ugcagugagcugagauugca	chr19:18475256-18475512(+)$1	256	105	125	14.8583
UUGCUUCUCUACCUGAGCAC	chr5:78075433-78075694(-)$1	261	214	234	13.2204
UCUGUGGUGAACUGUACAUA	chr14:99981284-99981570(-)$1	286	92	112	14.4534
GGCCUCCACUUCUUGAGGUC	chr16:30435190-30435470(-)$1	280	22	42	14.5525
UGCUCCCUCAGACUGGGGCA	chr10:82033251-82033486(-)$1	235	177	197	14.8221
GUUGCAUUUCGAAUUGAACA	chr2:128950336-128950608(+)$1	272	29	49	13.0788
UCAGAACAUCUCUAUUCUGC	chr19:18679414-18679696(+)$1	282	221	241	13.2204
GCCCCCUGUGUACUGAGCGG	chr17:76167912-76168163(+)$1	251	89	109	14.2198
AAGAUGUUUGUAAUCGUUUU	chr3:127340917-127341230(+)$1	313	115	135	14.4156
GAUGUCACAGUGCAGACAUC	chr9:138395886-138396175(+)$1	289	201	221	13.8218
GAUAGAUUAUAUAUUCUUCC	chr7:6502166-6502439(-)$1	273	62	82	14.1311
GCGUUUACAUAGAAAGACGU	chr16:85009419-85009695(-)$1	276	183	203	14.5525
UCAGUGGUAUUUUAUACUUG	chr2:97525585-97525806(-)$1	221	112	132	14.6432
GCUCUGAAGAUUCCCAGAAG	chr17:61896097-61896449(+)$1	352	244	264	14.1938
ACCAGGGAAGUGUGUGUGUG	chr17:75495637-75495901(+)$1	264	79	99	13.2419
GGUGUAUUCUGCCCUGCGCA	chr1:150238321-150238584(-)$1	263	18	38	15.0486
GCAGGCCUCUCGCUGCCUGU	chr21:46270481-46270710(-)$1	229	90	110	13.8218
CCUGCGACCCUCCCCGCUUG	chr2:242511861-242512122(+)$1	261	187	207	14.7237
CGAUGCCCAAAGCAGCAUCU	chr17:79687351-79687627(+)$1	276	103	123	13.2204
CAUGGCUGUCUCCUGCCCCU	chr19:10427336-10427582(-)$1	246	11	31	14.4840
UUUGCCUCUUCUUUGUGCCU	chr11:57584701-57584945(+)$1	244	137	157	13.4204
UCCCCCAUUUUCCAGGGGGU	chr1:33789970-33790240(-)$1	270	73	93	15.0003
CAUAUCUUUCUCCUGAAAUG	chr19:3123743-3123984(+)$1	241	197	217	13.5043
AUCAGGGUAGUAGACCUGUC	chr4:6709562-6709831(-)$1	269	239	259	14.6468
GAGCCCUUGCCUCCGAGCUC	chr8:22278388-22278664(+)$1	276	134	154	14.7156
CCGAGGCUGCGGAACCUCGC	chr16:58059862-58060102(+)$1	240	131	151	13.2086
UGCCUUUUUAGGAUAAGGUA	chr20:48569259-48569549(+)$1	290	56	76	15.0118
AGCGUCAGACCCAGGACUGU	chr1:1375236-1375514(+)$1	278	209	229	14.1938
AAUGGAGAACAAAGUCUAUU	chr11:126072906-126073204(-)$1	298	79	99	13.8218
caggguggucucgaacuccu	chr6:160101659-160101882(-)$1	223	105	125	13.0136
AAGAGUCUAUCUAAGCUCUU	chr22:42981104-42981395(-)$1	291	213	233	13.8218
GGGGCCAAUACCCAGACCCC	chr17:43183838-43184133(+)$1	295	186	206	14.0977
GCGGGCUUCUUCAUGGCUGC	chr17:77758941-77759230(+)$1	289	208	228	14.0977
AUGCUGGAGGCACACAGCUU	chr14:24592995-24593249(+)$1	254	146	166	14.6468
CCCUGUAGUCCGCCACAGGG	chr15:64448027-64448308(-)$1	281	127	147	14.5525
CAGGGGAGAGAAGGCCUCAU	chr11:63971609-63971910(+)$1	301	74	94	14.4353
UCCCUUCCAAGCUAGAGGGC	chr2:219140030-219140281(-)$1	251	119	139	14.9672
GCAACGUUCGCUCUCUUGAC	chr5:180218214-180218568(-)$1	354	256	276	14.3858
GGGUGGGGACUGAGCCGCCC	chr19:47724516-47724838(-)$1	322	51	71	13.8218
uaaugugcugugugacauug	chr14:95058803-95059124(+)$1	321	269	289	14.7523
GGGCGCAAAACCCAGUGCCU	chr2:241818188-241818519(+)$1	331	254	274	14.4015
AUUGACCUCUGCCUGUCUCU	chr16:58195820-58196088(-)$1	268	226	246	13.7568
GGGCCAGGGAGGCAUGGCCC	chr16:2820949-2821305(+)$1	356	209	229	13.8218
GAAGACACAAGGCAGUUUGU	chr22:38202431-38202671(+)$1	240	30	50	14.4534
GGGAAGGGCAGAAGCUUCCU	chr16:30681391-30681757(+)$1	366	266	286	13.8218
AAGCCAGGGACUCAUGACUU	chr20:44978721-44978991(-)$1	270	87	107	13.0568
GGAGGCCACAGCCAGCCCUU	chr10:71873531-71873826(-)$1	295	166	186	14.4008
ACUUAUUUUCCUUUGUAAUG	chr17:40466484-40466776(-)$1	292	96	116	14.3772
ucaugccuauaauuguagug	chr3:48787744-48788040(-)$1	296	123	143	14.7456
CUGUGUGCUCCUGAACACGG	chr16:633106-633367(+)$1	261	36	56	14.5525
GUGGGCCUCAUUCUGCCAAA	chr1:150938143-150938403(-)$1	260	178	198	14.1790
AUCCCCACUCUCUAGGGGAU	chr8:28205756-28206061(-)$1	305	121	141	13.8218
UUAGAACGUGUGUUUUCUUA	chr9:34370180-34370442(-)$1	262	92	112	14.4698
gaagcuuauauauugguuug	chr6:160102465-160102703(-)$1	238	29	49	15.1287
UUAACUACAAAAAAAGUUUA	chr3:128889104-128889345(-)$1	241	216	236	14.6432
GCUCCUGAGGCCCAAGGGCA	chr16:315661-315988(+)$1	327	289	309	14.7247
ACUCAGGAAGUCAACAGAGU	chr9:131123126-131123475(+)$1	349	9	29	14.0977
GCCCAGCCGUCUUCCUGGCC	chr22:38615773-38616054(-)$1	281	107	127	14.4534
uguagugcacuauaauuaug	chr17:57279506-57279964(+)$1	458	344	364	14.9936
GCUCCUCGGGACAAGGGGGC	chr16:2226810-2227133(+)$1	323	145	165	14.4156
GGACCCCCCACCCAGGGGAC	chr19:1038808-1039076(+)$1	268	168	188	14.4141
UAAGCCCACACCCUGGCUUC	chr7:137563325-137563614(-)$1	289	3	23	13.2204
CAGGCUCCCUCCUCAGCCUC	chr1:153579707-153580022(-)$1	315	72	92	14.8952
GGGGUAUAUUCAUUUGCCCC	chr10:101910748-101910996(-)$1	248	83	103	14.5525
GGACUUAGUGCAACAGGUUG	chr20:4680861-4681114(+)$1	253	48	68	13.9117
CAUAUGGAGCCAGACAUUGG	chr11:64533079-64533343(-)$1	264	124	144	14.4175

#DB
((((((........))))))	chr7:128409627-128409854(+)$1	1	134	154	14.7523
((((((........))))))	chr7:4804124-4804367(+)$1	1	2	22	13.8218
((((((........))))))	chr1:145441563-145441916(+)$1	1	119	139	13.8218
((.(((........)))..)	chr2:86254134-86254422(-)$1	1	202	222	13.6632
(.((((........)))).)	chr12:131361370-131361636(+)$1	1	121	141	14.4698
.(((((........))))).	chr12:56365856-56366160(+)$1	1	206	226	14.9690
.(((((........))))).	chr17:73702612-73702894(+)$1	1	74	94	14.7111
((((((........))))))	chr1:65692410-65692675(+)$1	1	1	21	14.5525
((((((........))))))	chr19:7535643-7535933(+)$1	1	228	248	14.4156
.(((((........))))))	chr19:18475256-18475512(+)$1	1	105	125	14.8583
.(((((........))))).	chr5:78075433-78075694(-)$1	1	214	234	13.2204
(.((((........)))).)	chr14:99981284-99981570(-)$1	1	92	112	14.4534
((((((........))))))	chr16:30435190-30435470(-)$1	1	22	42	14.5525
((((((........))))).	chr10:82033251-82033486(-)$1	1	177	197	14.8221
(((.((........))))))	chr2:128950336-128950608(+)$1	1	29	49	13.0788
.(((((........))))).	chr19:18679414-18679696(+)$1	1	221	241	13.2204
((...(........).))))	chr17:76167912-76168163(+)$1	1	89	109	14.2198
((((((........))))))	chr3:127340917-127341230(+)$1	1	115	135	14.4156
((((((........))))))	chr9:138395886-138396175(+)$1	1	201	221	13.8218
(..(((........)))..)	chr7:6502166-6502439(-)$1	1	62	82	14.1311
((((((........))))))	chr16:85009419-85009695(-)$1	1	183	203	14.5525
..((((........)))).)	chr2:97525585-97525806(-)$1	1	112	132	14.6432
((((((........))).))	chr17:61896097-61896449(+)$1	1	244	264	14.1938
((((.(........).)).)	chr17:75495637-75495901(+)$1	1	79	99	13.2419
.(((((........))))).	chr1:150238321-150238584(-)$1	1	18	38	15.0486
((((((........))))))	chr21:46270481-46270710(-)$1	1	90	110	13.8218
...(((........)))...	chr2:242511861-242512122(+)$1	1	187	207	14.7237
.(((((........))))).	chr17:79687351-79687627(+)$1	1	103	123	13.2204
((.(((........)))..)	chr19:10427336-10427582(-)$1	1	11	31	14.4840
(..(((........).))..	chr11:57584701-57584945(+)$1	1	137	157	13.4204
((((((........))))).	chr1:33789970-33790240(-)$1	1	73	93	15.0003
(((.((........)).)))	chr19:3123743-3123984(+)$1	1	197	217	13.5043
..((((........))))..	chr4:6709562-6709831(-)$1	1	239	259	14.6468
((((.(........).))))	chr8:22278388-22278664(+)$1	1	134	154	14.7156
)(((((........))))).	chr16:58059862-58060102(+)$1	1	131	151	13.2086
((((((........))))).	chr20:48569259-48569549(+)$1	1	56	76	15.0118
((((((........))).))	chr1:1375236-1375514(+)$1	1	209	229	14.1938
((((((........))))))	chr11:126072906-126073204(-)$1	1	79	99	13.8218
((((((........)).)))	chr6:160101659-160101882(-)$1	1	105	125	13.0136
((((((........))))))	chr22:42981104-42981395(-)$1	1	213	233	13.8218
((((.(........).))))	chr17:43183838-43184133(+)$1	1	186	206	14.0977
((((.(........).))))	chr17:77758941-77759230(+)$1	1	208	228	14.0977
..((((........))))..	chr14:24592995-24593249(+)$1	1	146	166	14.6468
((((((........))))))	chr15:64448027-64448308(-)$1	1	127	147	14.5525
..((((........))))..	chr11:63971609-63971910(+)$1	1	74	94	14.4353
.(((((........))))).	chr2:219140030-219140281(-)$1	1	119	139	14.9672
((((.(........)))).)	chr5:180218214-180218568(-)$1	1	256	276	14.3858
((((((........))))))	chr19:47724516-47724838(-)$1	1	51	71	13.8218
((((((........))))))	chr14:95058803-95059124(+)$1	1	269	289	14.7523
((((((........))))..	chr2:241818188-241818519(+)$1	1	254	274	14.4015
(..(((........))))))	chr16:58195820-58196088(-)$1	1	226	246	13.7568
((((((........))))))	chr16:2820949-2821305(+)$1	1	209	229	13.8218
(.((((........)))).)	chr22:38202431-38202671(+)$1	1	30	50	14.4534
((((((........))))))	chr16:30681391-30681757(+)$1	1	266	286	13.8218
(((.((........)).)))	chr20:44978721-44978991(-)$1	1	87	107	13.0568
((((((........)))..)	chr10:71873531-71873826(-)$1	1	166	186	14.4008
(.((((........))))).	chr17:40466484-40466776(-)$1	1	96	116	14.3772
.(.(((........)))).)	chr3:48787744-48788040(-)$1	1	123	143	14.7456
((((((........))))))	chr16:633106-633367(+)$1	1	36	56	14.5525
...(((........)))..)	chr1:150938143-150938403(-)$1	1	178	198	14.1790
((((((........))))))	chr8:28205756-28206061(-)$1	1	121	141	13.8218
(.((((........)))).)	chr9:34370180-34370442(-)$1	1	92	112	14.4698
.(((((........))))).	chr6:160102465-160102703(-)$1	1	29	49	15.1287
..((((........)))).)	chr3:128889104-128889345(-)$1	1	216	236	14.6432
((.(((........))))))	chr16:315661-315988(+)$1	1	289	309	14.7247
((((.(........).))))	chr9:131123126-131123475(+)$1	1	9	29	14.0977
(.((((........)))).)	chr22:38615773-38616054(-)$1	1	107	127	14.4534
.(((((........))))))	chr17:57279506-57279964(+)$1	1	344	364	14.9936
((((((........))))))	chr16:2226810-2227133(+)$1	1	145	165	14.4156
(..(((........)))..)	chr19:1038808-1039076(+)$1	1	168	188	14.4141
.(((((........))))).	chr7:137563325-137563614(-)$1	1	3	23	13.2204
.(((((........))))).	chr1:153579707-153580022(-)$1	1	72	92	14.8952
((((((........))))))	chr10:101910748-101910996(-)$1	1	83	103	14.5525
)(((((........))))).	chr20:4680861-4681114(+)$1	1	48	68	13.9117
((.(((........))))))	chr11:64533079-64533343(-)$1	1	124	144	14.4175

#PSSM
d : 0.17	f : 0.14	e : 0.10	g : 0.09	[ : 0.08	c : 0.06	! : 0.05	: : 0.05	" : 0.05	b : 0.04	i : 0.04	= : 0.02	# : 0.01	E : 0.01	a : 0.01	$ : 0.01	h : 0.01	
e : 0.29	f : 0.13	d : 0.10	g : 0.09	! : 0.09	[ : 0.08	c : 0.05	i : 0.04	" : 0.04	= : 0.02	b : 0.01	# : 0.01	a : 0.01	
e : 0.26	d : 0.25	f : 0.13	g : 0.08	[ : 0.06	! : 0.05	i : 0.04	= : 0.02	" : 0.02	c : 0.02	b : 0.01	# : 0.01	
e : 0.24	d : 0.21	c : 0.18	f : 0.13	g : 0.08	i : 0.04	[ : 0.04	= : 0.02	b : 0.02	" : 0.01	
e : 0.22	c : 0.17	d : 0.16	f : 0.13	g : 0.08	[ : 0.08	b : 0.06	i : 0.04	= : 0.02	" : 0.01	
e : 0.22	c : 0.17	d : 0.16	f : 0.13	a : 0.10	g : 0.08	b : 0.05	i : 0.04	= : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.22	c : 0.17	d : 0.16	f : 0.13	a : 0.10	g : 0.08	b : 0.05	i : 0.04	= : 0.02	
e : 0.22	c : 0.18	d : 0.16	f : 0.13	] : 0.09	g : 0.08	b : 0.05	i : 0.04	= : 0.02	
e : 0.25	d : 0.21	c : 0.18	f : 0.13	g : 0.08	i : 0.04	] : 0.04	= : 0.02	b : 0.02	
e : 0.27	d : 0.22	f : 0.13	2 : 0.08	g : 0.08	i : 0.04	b : 0.04	c : 0.04	= : 0.02	] : 0.02	3 : 0.01	a : 0.01	
e : 0.27	f : 0.13	] : 0.13	2 : 0.09	d : 0.09	g : 0.08	3 : 0.05	i : 0.04	= : 0.02	c : 0.02	4 : 0.01	b : 0.01	a : 0.01	
d : 0.18	f : 0.16	e : 0.09	g : 0.09	: : 0.08	3 : 0.08	b : 0.05	c : 0.05	2 : 0.04	i : 0.04	] : 0.04	= : 0.02	4 : 0.02	6 : 0.01	> : 0.01	

#score	1067.747465751757
#seq	75
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_UTR_m3_run2.txt

#BEAR
!ccc[cccpppppppccc]ccc	chr19:811522-811786(+)$1	264	155	177	16.0221
iiiiiiiipppppppiiiiiii	chr19:39221256-39221480(-)$1	224	65	87	15.4456
##ffffffpppppppffffff3	chr6:31731953-31732194(+)$1	241	160	182	14.0551
c[ccccccpppppppccc]ccc	chr22:50883172-50883400(+)$1	228	38	60	15.8001
c[bb[cccpppppppcccbb]c	chr3:184098961-184099236(+)$1	275	120	142	15.0456
[bb[ddddpppppppddddbbd	chr4:83739920-83740137(-)$1	217	112	134	13.4884
fffff[bbpppppppbb]ffff	chr8:145537775-145538035(+)$1	260	74	96	13.3514
e!!eeeeepppppppeeeee44	chr14:24734754-24735069(-)$1	315	277	299	15.5395
###eeeeepppppppeeeee44	chr20:62522006-62522287(+)$1	281	172	194	15.4476
iiiiiiiipppppppiiiiiii	chr19:39221544-39221763(-)$1	219	176	198	15.4456
dgggggggrrrrrrrrrggggg	chr6:30531099-30531409(+)$1	310	250	272	11.0196
ddd!!cccpppppppccc]ddd	chr9:117051457-117051675(+)$1	218	40	62	15.5400
ddddddddpppppppdddd]dd	chr9:117052441-117052666(+)$1	225	136	158	13.8902
ggggg[bbpppppppbbggggg	chr19:10802330-10802579(+)$1	249	7	29	14.6399
=gggggggrrrrrrrrrggggg	chr4:83740112-83740331(-)$1	219	76	98	11.1025
dd[eeeeepppppppeeeee]d	chr3:52526726-52527018(+)$1	292	11	33	15.1777
dd"""cccpppppppccc333d	chr11:129734328-129734624(-)$1	296	121	143	16.1486
cc[eeeeepppppppeeeee]c	chr17:79952596-79952830(+)$1	234	158	180	15.2550
e[bb!!bbpppppppbb22bbe	chr1:1228812-1229074(-)$1	262	103	125	13.7586
gggggcccpppppppccc333g	chr17:73495689-73495960(+)$1	271	195	217	16.1296
eee"""bbpppppppbb22eee	chr17:79668779-79669135(+)$1	356	230	252	13.9927
e!!ccc[apppppppa]ccc22	chr14:24114311-24114528(+)$1	217	102	124	14.9057
f!!eeeeepppppppeeeee]f	chr2:159530359-159530613(+)$1	254	153	175	15.2923
iiiiiiiipppppppiiiiiii	chr10:93788791-93789061(+)$1	270	98	120	15.4456
eeffffffpppppppffffff]	chr1:1325509-1325746(-)$1	237	54	76	13.7331
=====[bbpppppppbb]====	chr2:85771522-85771801(+)$1	279	190	212	15.1839
hhheeeeepppppppeeeee::	chr8:21939350-21939603(+)$1	253	170	192	12.7844
eeee!!bbpppppppbb]eeee	chr19:18544932-18545171(+)$1	239	84	106	14.3909
========ppppppp=======	chr6:33161939-33162207(-)$1	268	226	248	15.9457
eeeeeeeepppppppeeeee:F	chr1:879975-880235(-)$1	260	143	165	13.5944
ooccccccpppppppccc:eee	chr11:68382277-68382559(+)$1	282	58	80	13.8127
#gggggggpppppppggggggg	chr3:184104278-184104546(+)$1	268	9	31	15.1341
dddd[cccpppppppccc]ddd	chr16:72143213-72143469(+)$1	256	20	42	15.3911
eee[ddddpppppppdddd]ee	chr3:48663268-48663531(-)$1	263	2	24	14.0984
dddd[cccpppppppccc333d	chr10:79569210-79569531(-)$1	321	83	105	15.9174
dddd[cccpppppppccc]ddd	chr19:49611415-49611639(+)$1	224	184	206	15.3911
b[a!!cccpppppppccc22a]	chr14:24614555-24614775(-)$1	220	44	66	15.7519
e!!ccc[arrrrrrrrra]ccc	chr2:27589624-27589888(-)$1	264	174	196	11.3156
eeeeeeeepppppppeeeee::	chr19:48983925-48984216(+)$1	291	115	137	13.1518
dd[a[cccpppppppccc]a]d	chr2:85825803-85826088(-)$1	285	104	126	16.0757
"""eeeeepppppppeeeee33	chr17:40265995-40266202(-)$1	207	150	172	15.7202
dddd[cccpppppppcccdddd	chr16:16248417-16248677(-)$1	260	152	174	15.0401
d[a[acccpppppppccc]a]a	chrX:41207002-41207255(+)$1	253	149	171	16.0896
d####cccpppppppccc22dd	chr16:89620792-89621046(+)$1	254	78	100	15.5161
""bb[cccpppppppccc333b	chr11:67069593-67069912(+)$1	319	40	62	15.8367
'''eeeeepppppppeeeeeii	chr3:184105705-184105922(+)$1	217	27	49	13.4051
ii:eeeeepppppppeeeee:f	chr17:38061633-38061850(-)$1	217	147	169	13.3227
========ppppppp=======	chr20:62571851-62572094(-)$1	243	30	52	15.9457
:cccddddpppppppdddd]cc	chr16:89813155-89813399(-)$1	244	158	180	13.3693
cca[ddddpppppppdddd]a]	chr11:68523902-68524161(-)$1	259	117	139	14.5150
Gccc[cccpppppppccc]ccc	chr19:5691944-5692231(-)$1	287	110	132	15.2889
"""eeeeepppppppeeeee22	chr1:249144373-249144716(-)$1	343	303	325	15.2295
""bb!!bbpppppppbb22bb3	chr9:117074459-117074674(+)$1	215	92	114	13.9882

#otherMatches

#Seq PSSM
GCCCAGUGGGUCAGGCACAGGG	chr19:811522-811786(+)$1	264	155	177	16.0221
GGGUGCCACUCUCUCUGGCAUC	chr19:39221256-39221480(-)$1	224	65	87	15.4456
GAACUUGUGGCAGCAACAGGUA	chr6:31731953-31732194(+)$1	241	160	182	14.0551
GGAGCUGGCACUGAACCAGGCU	chr22:50883172-50883400(+)$1	228	38	60	15.8001
AGAGUGCCCAACCCCGGCCUGU	chr3:184098961-184099236(+)$1	275	120	142	15.0456
CAGUGAUGAUUUUCCUAUUCUG	chr4:83739920-83740137(-)$1	217	112	134	13.4884
ACCGGGAGCAACGACCUGCCGG	chr8:145537775-145538035(+)$1	260	74	96	13.3514
AACUUAUUGGGACUGAAUAAAG	chr14:24734754-24735069(-)$1	315	277	299	15.5395
UAUGCCCUGCCCUAAAGGGCUC	chr20:62522006-62522287(+)$1	281	172	194	15.4476
GACAGGGUGGCUCAGGCUCUGU	chr19:39221544-39221763(-)$1	219	176	198	15.4456
ACUGGCCCUGAGGAAAUGGGUC	chr6:30531099-30531409(+)$1	310	250	272	11.0196
GCGUCAUCUCACCUUGGUUUGC	chr9:117051457-117051675(+)$1	218	40	62	15.5400
GCUUCCUGGCAGGGACGGGCAA	chr9:117052441-117052666(+)$1	225	136	158	13.8902
UCUCCUACAUGUUCAGUGGAGG	chr19:10802330-10802579(+)$1	249	7	29	14.6399
UCACCCAGGCCAAUAAGCUGGG	chr4:83740112-83740331(-)$1	219	76	98	11.1025
CACCAGUGUCGUGUCUGCUGUU	chr3:52526726-52527018(+)$1	292	11	33	15.1777
GUGAUGGCAACGGUGGCCUGGA	chr11:129734328-129734624(-)$1	296	121	143	16.1486
GUAGGCGGCCUGCUCUUGCUCA	chr17:79952596-79952830(+)$1	234	158	180	15.2550
CAUCAGCCUCCACCUGGAAGAG	chr1:1228812-1229074(-)$1	262	103	125	13.7586
UGCUUGCCUGGAUGUGGCCCCG	chr17:73495689-73495960(+)$1	271	195	217	16.1296
CCUGGGGCUCCCUCUGCAGGGG	chr17:79668779-79669135(+)$1	356	230	252	13.9927
CGUCAACGGGGAGAACAUUGCG	chr14:24114311-24114528(+)$1	217	102	124	14.9057
GUCAGUGGGAAAAUGCCACUCC	chr2:159530359-159530613(+)$1	254	153	175	15.2923
UGUGAAAUGGUUUAAAUUUUAC	chr10:93788791-93789061(+)$1	270	98	120	15.4456
AAAGGCCCAAGCCCGGGGCCUG	chr1:1325509-1325746(-)$1	237	54	76	13.7331
GUGAUGUCAUACAGAGAAGUCA	chr2:85771522-85771801(+)$1	279	190	212	15.1839
UCCGCUCGCAAACCCCGAGCUU	chr8:21939350-21939603(+)$1	253	170	192	12.7844
CUCUCCGCAGUACUCGCCAGGG	chr19:18544932-18545171(+)$1	239	84	106	14.3909
GCCUCUCUGGAAGAGGGAGGGG	chr6:33161939-33162207(-)$1	268	226	248	15.9457
GCUCUCAGAGGACGACUGAGGC	chr1:879975-880235(-)$1	260	143	165	13.5944
UACUGGUAGAUAAUAUGCUCUG	chr11:68382277-68382559(+)$1	282	58	80	13.8127
AGCCAACCAAUGUGAGGUUGGC	chr3:184104278-184104546(+)$1	268	9	31	15.1341
GUGGCUCCUAAUUGUGGAACCA	chr16:72143213-72143469(+)$1	256	20	42	15.3911
UUUCUCCGCUGUCUUUGGAUAA	chr3:48663268-48663531(-)$1	263	2	24	14.0984
GUUGUCUUCAUCAAAAAGUCCC	chr10:79569210-79569531(-)$1	321	83	105	15.9174
GUCUGGGCAACGACAGCCGAGA	chr19:49611415-49611639(+)$1	224	184	206	15.3911
UGUGACCUAGGAUGAAGGGAAG	chr14:24614555-24614775(-)$1	220	44	66	15.7519
AAGGAAGGCACACACUACGUUC	chr2:27589624-27589888(-)$1	264	174	196	11.3156
UCGUGGGAGAUGAGGUCCCAGG	chr19:48983925-48984216(+)$1	291	115	137	13.1518
UGUCGUUUUGUUUUUAAAGGUC	chr2:85825803-85826088(-)$1	285	104	126	16.0757
CCCUGACUACUACGAGGUCAUC	chr17:40265995-40266202(-)$1	207	150	172	15.7202
CAGCUGCAGUACAAGUGUGCUG	chr16:16248417-16248677(-)$1	260	152	174	15.0401
GCAGCCCUGUUCAGAAGGUGGU	chrX:41207002-41207255(+)$1	253	149	171	16.0896
GACACAGUUCCCUCCACUCACA	chr16:89620792-89621046(+)$1	254	78	100	15.5161
CAGGAUCCCCUCCCAGGACACC	chr11:67069593-67069912(+)$1	319	40	62	15.8367
GGUGCACUGUGAGAAGGUGCAG	chr3:184105705-184105922(+)$1	217	27	49	13.4051
GACCCUUCCUCUGUUGAAGGAC	chr17:38061633-38061850(-)$1	217	147	169	13.3227
CGGUGUGUCCAUUCUGCGCGCC	chr20:62571851-62572094(-)$1	243	30	52	15.9457
AGGGUGAGAUGCUCCCUCAGCC	chr16:89813155-89813399(-)$1	244	158	180	13.3693
GUGAGGAGAGAGUGGCUCCACG	chr11:68523902-68524161(-)$1	259	117	139	14.5150
CUUCGUGGAACACUACCGGGAG	chr19:5691944-5692231(-)$1	287	110	132	15.2889
AAUGAGCUCUCCUCCAGCUUUG	chr1:249144373-249144716(-)$1	343	303	325	15.2295
CUGCCGCCCCAGCCUGGACGCU	chr9:117074459-117074674(+)$1	215	92	114	13.9882

#DB
.(((.(((.......))).)))	chr19:811522-811786(+)$1	1	155	177	16.0221
((((((((.......)))))))	chr19:39221256-39221480(-)$1	1	65	87	15.4456
..((((((.......)))))).	chr6:31731953-31732194(+)$1	1	160	182	14.0551
(.((((((.......))).)))	chr22:50883172-50883400(+)$1	1	38	60	15.8001
(.((.(((.......))))).)	chr3:184098961-184099236(+)$1	1	120	142	15.0456
.((.((((.......)))))))	chr4:83739920-83740137(-)$1	1	112	134	13.4884
(((((.((.......)).))))	chr8:145537775-145538035(+)$1	1	74	96	13.3514
(..(((((.......)))))..	chr14:24734754-24735069(-)$1	1	277	299	15.5395
...(((((.......)))))..	chr20:62522006-62522287(+)$1	1	172	194	15.4476
((((((((.......)))))))	chr19:39221544-39221763(-)$1	1	176	198	15.4456
)(((((((.........)))))	chr6:30531099-30531409(+)$1	1	250	272	11.0196
(((..(((.......))).)))	chr9:117051457-117051675(+)$1	1	40	62	15.5400
((((((((.......)))).))	chr9:117052441-117052666(+)$1	1	136	158	13.8902
(((((.((.......)))))))	chr19:10802330-10802579(+)$1	1	7	29	14.6399
((((((((.........)))))	chr4:83740112-83740331(-)$1	1	76	98	11.1025
((.(((((.......))))).)	chr3:52526726-52527018(+)$1	1	11	33	15.1777
((...(((.......)))...)	chr11:129734328-129734624(-)$1	1	121	143	16.1486
((.(((((.......))))).)	chr17:79952596-79952830(+)$1	1	158	180	15.2550
(.((..((.......))..)))	chr1:1228812-1229074(-)$1	1	103	125	13.7586
((((((((.......)))...)	chr17:73495689-73495960(+)$1	1	195	217	16.1296
(((...((.......))..)))	chr17:79668779-79669135(+)$1	1	230	252	13.9927
(..(((.(.......).)))..	chr14:24114311-24114528(+)$1	1	102	124	14.9057
(..(((((.......))))).)	chr2:159530359-159530613(+)$1	1	153	175	15.2923
((((((((.......)))))))	chr10:93788791-93789061(+)$1	1	98	120	15.4456
((((((((.......)))))).	chr1:1325509-1325746(-)$1	1	54	76	13.7331
(((((.((.......)).))))	chr2:85771522-85771801(+)$1	1	190	212	15.1839
)))(((((.......)))))..	chr8:21939350-21939603(+)$1	1	170	192	12.7844
((((..((.......)).))))	chr19:18544932-18545171(+)$1	1	84	106	14.3909
((((((((.......)))))))	chr6:33161939-33162207(-)$1	1	226	248	15.9457
)))(((((.......))))).)	chr1:879975-880235(-)$1	1	143	165	13.5944
..)))(((.......))).(((	chr11:68382277-68382559(+)$1	1	58	80	13.8127
.(((((((.......)))))))	chr3:184104278-184104546(+)$1	1	9	31	15.1341
((((.(((.......))).)))	chr16:72143213-72143469(+)$1	1	20	42	15.3911
(((.((((.......)))).))	chr3:48663268-48663531(-)$1	1	2	24	14.0984
((((.(((.......)))...)	chr10:79569210-79569531(-)$1	1	83	105	15.9174
((((.(((.......))).)))	chr19:49611415-49611639(+)$1	1	184	206	15.3911
(.(..(((.......)))..).	chr14:24614555-24614775(-)$1	1	44	66	15.7519
(..(((.(.........).)))	chr2:27589624-27589888(-)$1	1	174	196	11.3156
)))(((((.......)))))..	chr19:48983925-48984216(+)$1	1	115	137	13.1518
((.(.(((.......))).).)	chr2:85825803-85826088(-)$1	1	104	126	16.0757
...(((((.......)))))..	chr17:40265995-40266202(-)$1	1	150	172	15.7202
((((.(((.......)))))))	chr16:16248417-16248677(-)$1	1	152	174	15.0401
(.(.((((.......))).).)	chrX:41207002-41207255(+)$1	1	149	171	16.0896
(....(((.......)))..))	chr16:89620792-89621046(+)$1	1	78	100	15.5161
..((.(((.......)))...)	chr11:67069593-67069912(+)$1	1	40	62	15.8367
...(((((.......)))))))	chr3:184105705-184105922(+)$1	1	27	49	13.4051
)).(((((.......))))).(	chr17:38061633-38061850(-)$1	1	147	169	13.3227
((((((((.......)))))))	chr20:62571851-62572094(-)$1	1	30	52	15.9457
.(((((((.......)))).))	chr16:89813155-89813399(-)$1	1	158	180	13.3693
(((.((((.......)))).).	chr11:68523902-68524161(-)$1	1	117	139	14.5150
)(((.(((.......))).)))	chr19:5691944-5692231(-)$1	1	110	132	15.2889
...(((((.......)))))..	chr1:249144373-249144716(-)$1	1	303	325	15.2295
..((..((.......))..)).	chr9:117074459-117074674(+)$1	1	92	114	13.9882

#PSSM
d : 0.22	e : 0.18	i : 0.07	c : 0.07	= : 0.07	" : 0.07	# : 0.05	f : 0.03	g : 0.03	! : 0.01	[ : 0.01	h : 0.01	o : 0.01	b : 0.01	' : 0.01	: : 0.01	G : 0.01	
d : 0.16	e : 0.11	c : 0.09	[ : 0.09	g : 0.09	i : 0.07	! : 0.07	" : 0.07	# : 0.05	= : 0.05	b : 0.01	f : 0.01	h : 0.01	o : 0.01	' : 0.01	
d : 0.11	c : 0.09	b : 0.09	g : 0.09	e : 0.09	! : 0.07	i : 0.05	f : 0.05	[ : 0.05	" : 0.05	= : 0.05	a : 0.05	# : 0.03	h : 0.01	' : 0.01	: : 0.01	
e : 0.24	c : 0.13	g : 0.09	d : 0.09	b : 0.07	[ : 0.07	i : 0.05	f : 0.05	= : 0.05	! : 0.03	" : 0.03	a : 0.01	# : 0.01	
e : 0.22	[ : 0.16	d : 0.09	g : 0.09	! : 0.09	c : 0.07	i : 0.05	f : 0.05	= : 0.05	" : 0.03	a : 0.01	# : 0.01	
c : 0.35	e : 0.22	d : 0.09	i : 0.05	[ : 0.05	g : 0.05	! : 0.05	f : 0.03	= : 0.03	" : 0.01	
c : 0.32	e : 0.22	b : 0.13	d : 0.09	i : 0.05	g : 0.05	f : 0.03	[ : 0.03	= : 0.03	
c : 0.32	e : 0.22	b : 0.13	d : 0.09	i : 0.05	g : 0.05	f : 0.03	a : 0.03	= : 0.03	
p : 0.94	r : 0.05	
p : 0.94	r : 0.05	
p : 0.94	r : 0.05	
p : 0.94	r : 0.05	
p : 0.94	r : 0.05	
p : 0.94	r : 0.05	
p : 0.94	r : 0.05	
c : 0.32	e : 0.22	b : 0.13	d : 0.09	i : 0.05	r : 0.05	f : 0.03	= : 0.03	a : 0.01	g : 0.01	
c : 0.32	e : 0.22	b : 0.13	d : 0.09	i : 0.05	r : 0.05	f : 0.03	= : 0.03	] : 0.01	g : 0.01	
c : 0.33	e : 0.22	d : 0.09	g : 0.07	i : 0.05	] : 0.05	2 : 0.05	f : 0.03	= : 0.03	a : 0.01	
e : 0.24	] : 0.16	d : 0.11	2 : 0.09	g : 0.07	3 : 0.07	i : 0.05	f : 0.05	= : 0.05	b : 0.01	c : 0.01	: : 0.01	
e : 0.28	c : 0.09	b : 0.07	g : 0.07	d : 0.07	] : 0.07	3 : 0.07	i : 0.05	f : 0.05	= : 0.05	2 : 0.03	a : 0.03	
] : 0.11	d : 0.11	c : 0.09	3 : 0.09	i : 0.07	g : 0.07	e : 0.07	: : 0.07	f : 0.05	b : 0.05	= : 0.05	4 : 0.03	2 : 0.03	a : 0.03	
d : 0.20	c : 0.13	g : 0.09	e : 0.09	i : 0.07	3 : 0.05	f : 0.05	] : 0.05	= : 0.05	4 : 0.03	2 : 0.03	: : 0.03	F : 0.01	a : 0.01	b : 0.01	

#score	776.8814888324695
#seq	53
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_UTR_m1_run2.txt

#BEAR
!!bb!!eeeeettttttttttteeeee22bb22	chr5:130494930-130495392(-)$1	462	30	63	22.9191
==========vvvvvvvvvvvvv==========	chr3:142775368-142775627(+)$1	259	138	171	27.7228
hhhhhddddwwwwwwwwwwwwwwdddd]hhhhh	chrX:152481636-152481915(-)$1	279	164	197	22.6232
hhhhhh!!cccuuuuuuuuuuuuccchhhhhhh	chr21:47989197-47989469(+)$1	272	212	245	24.2557
eeeeegggggggtttttttttttggggggg333	chr20:57603694-57603998(-)$1	304	39	72	24.4569
ggggg[bbxxxxxxxxxxxxxxxbbggggggg]	chr5:130977602-130977836(-)$1	234	171	204	21.2782
ddd!!ddddwwwwwwwwwwwwwwdddd]dddd4	chr3:9876866-9877156(+)$1	290	6	39	23.5887
ffff!!ddddvvvvvvvvvvvvvdddd22ffff	chr3:33429882-33430199(-)$1	317	210	243	24.5254
eeeee[eeeeeuuuuuuuuuuuueeeee]eeee	chr3:156865624-156865897(-)$1	273	206	239	24.9126
[eeeee[cccwwwwwwwwwwwwwwccc]eeeee	chr10:121334899-121335172(-)$1	273	184	217	24.5156
fff!!cccyyyyyyyyyyyyyyyyccc22ffff	chr5:134063285-134063549(+)$1	264	22	55	24.0920
ggg!!ffffffuuuuuuuuuuuuffffff]ggg	chr5:137891259-137891516(-)$1	257	41	74	25.6680
ccc!!ddddwwwwwwwwwwwwwwdddd22ccc2	chr5:43289481-43289765(-)$1	284	14	47	24.0994
iiiiiiii[ayyyyyyyyyyyyyyyya]iiiii	chr20:34292169-34292429(-)$1	260	145	178	25.3349
fff[cccbbwwwwwwwwwwwwwwbb]cccffff	chr13:111545406-111545669(-)$1	263	52	85	23.7306
ee==========ttttttttttt==========	chr5:6756895-6757185(+)$1	290	142	175	26.2358
fffff[ccc[bbtttttttttttbb]ccc]fff	chr1:213165731-213166035(-)$1	304	222	255	23.7277
===####ddddvvvvvvvvvvvvvdddd=====	chr15:50852551-50852825(-)$1	274	106	139	25.6745
ccccc!!ddddtttttttttttdddd22ccc]c	chr21:35275689-35275945(-)$1	256	29	62	23.6055
ccc!!ddddyyyyyyyyyyyyyyyydddd]ccc	chr3:10142855-10143091(+)$1	236	90	123	23.8459
gg[dddd[a[attttttttttta]a]ddddggg	chr17:42283638-42283887(-)$1	249	12	45	24.2170
ffff[a[dddduuuuuuuuuuuudddda]ffff	chr20:60757358-60757618(+)$1	260	144	177	24.8710
=======[cccvvvvvvvvvvvvvccc]=====	chr2:97525584-97525826(-)$1	242	202	235	27.0961
[iiiiiiiiivvvvvvvvvvvvviiiiiiiii]	chr5:176728407-176728672(-)$1	265	162	195	27.1094
dddgggggggwwwwwwwwwwwwwwggggggg]d	chr17:45700407-45700678(+)$1	271	171	204	24.9830
eeeee!!bbwwwwwwwwwwwwwwbb22eeeee3	chr22:38879441-38879673(-)$1	232	175	208	23.7205
dd"""a[cccwwwwwwwwwwwwwwccc]a333d	chr4:17838677-17838917(+)$1	240	10	43	25.0642
:iiiiiiiiivvvvvvvvvvvvviiiiiiiiii	chr1:21069308-21069557(-)$1	249	0	33	26.0080
===========vvvvvvvvvvvvv=========	chr17:40465258-40465503(-)$1	245	41	74	27.4076
ddd!!gggggggtttttttttttggggggg]dd	chr3:167726548-167726855(-)$1	307	205	238	24.4086
::gggggggwwwwwwwwwwwwwwgggggggFFF	chr20:57253618-57253899(+)$1	281	13	46	21.8668
===========wwwwwwwwwwwwww========	chr1:32798933-32799229(+)$1	296	180	213	26.1633
ggggg"""ddddtttttttttttdddd]ggggg	chr22:22114649-22114911(-)$1	262	155	188	24.6393
cc[bbffffffwwwwwwwwwwwwwwffffff22	chr15:34672616-34672910(-)$1	294	216	249	22.5036
ddd[acccwwwwwwwwwwwwwwccc]a]dddd0	chr7:30673411-30673709(+)$1	298	165	198	22.0519
bb[bb[eeeeettttttttttteeeee]bb]bb	chr9:33281199-33281478(+)$1	279	106	139	22.1334
eeee[bbyyyyyyyyyyyyyyyybb]eeeeedd	chrX:102930521-102930775(-)$1	254	110	143	22.8253
f[eeeee!!bbuuuuuuuuuuuubb22eeeee]	chrX:153671437-153671682(+)$1	245	162	195	24.7877
bbiiiiiiiiivvvvvvvvvvvvviiiiiiiii	chr5:176728472-176728693(-)$1	221	182	215	26.1211
========abbuuuuuuuuuuuubb]a]=====	chr17:45700015-45700305(+)$1	290	234	267	27.6653
""gggggggyyyyyyyyyyyyyyyyggggggg2	chr8:128753342-128753597(+)$1	255	137	170	25.1574
eeee[ffffffuuuuuuuuuuuuffffff22ee	chr1:150237741-150238008(-)$1	267	171	204	24.2897
bb[ffffffyyyyyyyyyyyyyyyyffffffbb	chr19:1010677-1010916(-)$1	239	135	168	22.5932
gggg!!fffffftttttttttttffffff22gg	chr17:79524236-79524496(-)$1	260	151	184	23.6853
##ffffffyyyyyyyyyyyyyyyyffffff333	chr3:196074547-196074814(-)$1	267	204	237	23.5589
dd!!ggggggguuuuuuuuuuuuggggggg]dd	chr7:151831945-151832175(-)$1	230	18	51	26.0972
ccc[eeeeewwwwwwwwwwwwwweeeee]ccc:	chr17:74730214-74730494(-)$1	280	88	121	23.1945
ccc####bbwwwwwwwwwwwwwwbb333ccc:D	chr1:226032902-226033157(-)$1	255	197	230	22.6509
eee"""eeeeeuuuuuuuuuuuueeeeeeeeee	chr5:139918949-139919331(+)$1	382	191	224	25.1532
:==========ttttttttttt==========d	chr8:26227914-26228156(+)$1	242	124	157	25.2639
""bb!!bb[bbuuuuuuuuuuuubbbb22bb22	chr1:991123-991399(+)$1	276	176	209	23.9429
!eeeee"""bbuuuuuuuuuuuubb]eeeee]b	chr11:9302395-9302686(-)$1	291	187	220	25.1854
ggg####ddddtttttttttttdddd333gggg	chr5:34925556-34925836(+)$1	280	164	197	24.6232
[dddd[bbbbbbtttttttttttbb]bb]bb]d	chr12:56989652-56989907(-)$1	255	129	162	22.3866
[dddd[fffffftttttttttttffffffdddd	chr19:975725-976005(+)$1	280	115	148	22.5248
[ccc[eeeeewwwwwwwwwwwwwweeeeeccc]	chr6:99847859-99848134(-)$1	275	224	257	24.3703
===========ttttttttttt===========	chr15:34671226-34671540(-)$1	314	208	241	26.4725
::iiiiiiiiivvvvvvvvvvvvviiiiiiiii	chr3:183862662-183862922(+)$1	260	67	100	24.5901

#otherMatches

#Seq PSSM
UUUAAUGGCAAGAAGUAAUAAAUUGCCUGUGCC	chr5:130494930-130495392(-)$1	462	30	63	22.9191
GAUGAAAUUUUUAUUGUUCUAAUGGAUUUCAUC	chr3:142775368-142775627(+)$1	259	138	171	27.7228
CUAUUUUGUGAAUUGGGAUAAUAACAGCAGUGG	chrX:152481636-152481915(-)$1	279	164	197	22.6232
AACUACCUAACUCCAAUCUUAAUGUUGUAGUUU	chr21:47989197-47989469(+)$1	272	212	245	24.2557
UGUUGAGUUUUUAAGAAAACACAGAGAACUAGC	chr20:57603694-57603998(-)$1	304	39	72	24.4569
UAAAAACAUACUAGUACAGAUUUUGUUUUGUUC	chr5:130977602-130977836(-)$1	234	171	204	21.2782
GUCAAGGCCAAAGGCAAAUUCAAGGCCAGACUG	chr3:9876866-9877156(+)$1	290	6	39	23.5887
UGCUUAUCAGACUUGAAAUUAUACUGAGUGGCA	chr3:33429882-33430199(-)$1	317	210	243	24.5254
AAGUGGUUAUUUGUUUAAAUGAUGGUGAAUACU	chr3:156865624-156865897(-)$1	273	206	239	24.9126
UCAUGAUGGAUAUGAACAUGAUUUUUCUUUAUG	chr10:121334899-121335172(-)$1	273	184	217	24.5156
AAAUGUAAUCCUUAUAUAGAAAUUUUAAUUUUG	chr5:134063285-134063549(+)$1	264	22	55	24.0920
UAGGAUGAAUUGAUCAUUAUAAAGAUUUAACUA	chr5:137891259-137891516(-)$1	257	41	74	25.6680
UGAUGUAGAUUAAUAAUGUAAGUUCUGAUUUAA	chr5:43289481-43289765(-)$1	284	14	47	24.0994
UCCUGUUACCUUGAAAAAAUAAAAAUGUUAACA	chr20:34292169-34292429(-)$1	260	145	178	25.3349
UGUACAGCCUGAGAAAUGCCAGUGGCCUGACAG	chr13:111545406-111545669(-)$1	263	52	85	23.7306
UGACAAAAAGAUAUCAUGUUUCGAUUUUUUUGU	chr5:6756895-6757185(+)$1	290	142	175	26.2358
AAUGCCUGAAACCAAAUCUCUCAGUCUCAAGUG	chr1:213165731-213166035(-)$1	304	222	255	23.7277
CUUGGUACUAAUUUUAAUUUUUAUUUGGAAGGG	chr15:50852551-50852825(-)$1	274	106	139	25.6745
AUUGUGCGCAUUGGCGAGAAAUAUGUUGACAUG	chr21:35275689-35275945(-)$1	256	29	62	23.6055
GACCCCAGAUAAAUUGUUGCCUGCUUCUGUGUC	chr3:10142855-10143091(+)$1	236	90	123	23.8459
UGUGGAAGAGAGUAUGUGUAUGUGUGUUCCUGU	chr17:42283638-42283887(-)$1	249	12	45	24.2170
UUGGUGUAAUCUCUUAAUAAACUGGUUCUUCAA	chr20:60757358-60757618(+)$1	260	144	177	24.8710
GAGGGUGGGCCUGCUGUGGACAAUGGCAUACUC	chr2:97525584-97525826(-)$1	242	202	235	27.0961
CUGCAGAUUAUUUAAGUGGCUUUUGAUCUGUAA	chr5:176728407-176728672(-)$1	265	162	195	27.1094
CUAUUGuuuuaaaaaaauaauuaaaaaaCAGUU	chr17:45700407-45700678(+)$1	271	171	204	24.9830
AUACCAUCAUCUUGUUUUCUUUUUGUAGGUAUA	chr22:38879441-38879673(-)$1	232	175	208	23.7205
UGGUUCGUGUAAAAAUACUGUAGGACAGGCUAC	chr4:17838677-17838917(+)$1	240	10	43	25.0642
UUAGUAUUGUGAAGUUGUGUUAAAUAGUACUAG	chr1:21069308-21069557(-)$1	249	0	33	26.0080
ACUUCAUAGUGUAAAAAUUUAUAUUAUUGUGAG	chr17:40465258-40465503(-)$1	245	41	74	27.4076
UACCUUUAUGUAUAAAAACCCAUUAUGUAAUGU	chr3:167726548-167726855(-)$1	307	205	238	24.4086
guugcagugagccgagaucacaccacugcacuc	chr20:57253618-57253899(+)$1	281	13	46	21.8668
CCUCUGUCUGUCUUCUCCUAAUUCUGCAGGUGG	chr1:32798933-32799229(+)$1	296	180	213	26.1633
UUAUAUUUCAUCUUAAUUCUUUUGAUGUUGUAA	chr22:22114649-22114911(-)$1	262	155	188	24.6393
AGAGUUCGUGUUCCCUGUUUUAAUCACAUGACU	chr15:34672616-34672910(-)$1	294	216	249	22.5036
AGGGACCGUAUUUUAUCUUCAGUGGCUGCCUGA	chr7:30673411-30673709(+)$1	298	165	198	22.0519
UUUUUGAUGGGUUUUGUUGUGUCUUGUGAACAA	chr9:33281199-33281478(+)$1	279	106	139	22.1334
CUUGAAGUAAAACAGCCCAUCCUCUGCAAGUCC	chrX:102930521-102930775(-)$1	254	110	143	22.8253
UGUCUUUGUGUUCUGUGGUACUUGCUGAGAGAA	chrX:153671437-153671682(+)$1	245	162	195	24.7877
UCUGCAGAUUAUUUAAGUGGCUUUUGAUCUGUA	chr5:176728472-176728693(-)$1	221	182	215	26.1211
GGCUUCUCCCGGUUCAUUUUAUGCGUGCGAGAA	chr17:45700015-45700305(+)$1	290	234	267	27.6653
AUUAAAUGUAAAUAACUUUAAUAAAACGUUUAU	chr8:128753342-128753597(+)$1	255	137	170	25.1574
AUUGUGAUUUUGACUAAUAAAAAAGAAUUUGUA	chr1:150237741-150238008(-)$1	267	171	204	24.2897
GCUGCCCGAUGACAUGAACAACAACUCGGGCGC	chr19:1010677-1010916(-)$1	239	135	168	22.5932
UUUGUUCAGUAAUGCACUUUAUUUUAUUGUCCA	chr17:79524236-79524496(-)$1	260	151	184	23.6853
CUGCAUUUUUUUAUAAAUACAUGUAAAUGUCCU	chr3:196074547-196074814(-)$1	267	204	237	23.5589
GUUUUUGUUGUUUUCUGUUCUGUAUAAUAGUAU	chr7:151831945-151832175(-)$1	230	18	51	26.0972
ACCUUUUUUUCCCUCUUCCCCCUAAAAAUGGUA	chr17:74730214-74730494(-)$1	280	88	121	23.1945
ACCAUGUAGGAAUAGGAGAUGAGCUUUGGGUAC	chr1:226032902-226033157(-)$1	255	197	230	22.6509
ACAAAUUGAUUUCCUAUCCACCUGAUUAUGUUC	chr5:139918949-139919331(+)$1	382	191	224	25.1532
UUGACAGUGUGCCAUUCGACAACACAUUGUUAU	chr8:26227914-26228156(+)$1	242	124	157	25.2639
UCCGAAGCCAGAAAUGCCUUAAACUGCAACGUC	chr1:991123-991399(+)$1	276	176	209	23.9429
UUCAGCAAGGCUGUACCCUCAAUGCAGUUGAUG	chr11:9302395-9302686(-)$1	291	187	220	25.1854
AAAUUAAGAUCUUAAAAUCAGUGAUUAUCUUUU	chr5:34925556-34925836(+)$1	280	164	197	24.6232
CACAAGUGCAGCUGUAGAAAAGUGCUUGUCAGU	chr12:56989652-56989907(-)$1	255	129	162	22.3866
AUUGUAUUUAAACUUCAGAAAUAUUUAAGACGA	chr19:975725-976005(+)$1	280	115	148	22.5248
UGUAAUGUUCUUAAAAUUAUUCUUGAAUGUACU	chr6:99847859-99848134(-)$1	275	224	257	24.3703
AGUGGCAUUAUUGACUGCUGAUGUGAUGCUACU	chr15:34671226-34671540(-)$1	314	208	241	26.4725
GAAGUCACACUGCCUGCUCCUUUGGGUGUGAUU	chr3:183862662-183862922(+)$1	260	67	100	24.5901

#DB
..((..(((((...........)))))..))..	chr5:130494930-130495392(-)$1	1	30	63	22.9191
((((((((((.............))))))))))	chr3:142775368-142775627(+)$1	1	138	171	27.7228
(((((((((..............)))).)))))	chrX:152481636-152481915(-)$1	1	164	197	22.6232
((((((..(((............))))))))))	chr21:47989197-47989469(+)$1	1	212	245	24.2557
((((((((((((...........)))))))...	chr20:57603694-57603998(-)$1	1	39	72	24.4569
(((((.((...............))))))))).	chr5:130977602-130977836(-)$1	1	171	204	21.2782
(((..((((..............)))).)))).	chr3:9876866-9877156(+)$1	1	6	39	23.5887
((((..((((.............))))..))))	chr3:33429882-33430199(-)$1	1	210	243	24.5254
(((((.(((((............))))).))))	chr3:156865624-156865897(-)$1	1	206	239	24.9126
.(((((.(((..............))).)))))	chr10:121334899-121335172(-)$1	1	184	217	24.5156
(((..(((................)))..))))	chr5:134063285-134063549(+)$1	1	22	55	24.0920
(((..((((((............)))))).)))	chr5:137891259-137891516(-)$1	1	41	74	25.6680
(((..((((..............))))..))).	chr5:43289481-43289765(-)$1	1	14	47	24.0994
((((((((.(................).)))))	chr20:34292169-34292429(-)$1	1	145	178	25.3349
(((.(((((..............)).)))))))	chr13:111545406-111545669(-)$1	1	52	85	23.7306
))((((((((((...........))))))))))	chr5:6756895-6757185(+)$1	1	142	175	26.2358
(((((.(((.((...........)).))).)))	chr1:213165731-213166035(-)$1	1	222	255	23.7277
(((....((((.............)))))))))	chr15:50852551-50852825(-)$1	1	106	139	25.6745
(((((..((((...........))))..))).)	chr21:35275689-35275945(-)$1	1	29	62	23.6055
(((..((((................)))).)))	chr3:10142855-10143091(+)$1	1	90	123	23.8459
((.((((.(.(...........).).)))))))	chr17:42283638-42283887(-)$1	1	12	45	24.2170
((((.(.((((............))))).))))	chr20:60757358-60757618(+)$1	1	144	177	24.8710
(((((((.(((.............))).)))))	chr2:97525584-97525826(-)$1	1	202	235	27.0961
.(((((((((.............))))))))).	chr5:176728407-176728672(-)$1	1	162	195	27.1094
((((((((((..............))))))).)	chr17:45700407-45700678(+)$1	1	171	204	24.9830
(((((..((..............))..))))).	chr22:38879441-38879673(-)$1	1	175	208	23.7205
((...(.(((..............))).)...)	chr4:17838677-17838917(+)$1	1	10	43	25.0642
.(((((((((.............)))))))))(	chr1:21069308-21069557(-)$1	1	0	33	26.0080
(((((((((((.............)))))))))	chr17:40465258-40465503(-)$1	1	41	74	27.4076
(((..(((((((...........))))))).))	chr3:167726548-167726855(-)$1	1	205	238	24.4086
..(((((((..............)))))))(((	chr20:57253618-57253899(+)$1	1	13	46	21.8668
(((((((((((..............))))))))	chr1:32798933-32799229(+)$1	1	180	213	26.1633
(((((...((((...........)))).)))))	chr22:22114649-22114911(-)$1	1	155	188	24.6393
((.((((((((..............))))))..	chr15:34672616-34672910(-)$1	1	216	249	22.5036
(((.((((..............))).).)))).	chr7:30673411-30673709(+)$1	1	165	198	22.0519
((.((.(((((...........))))).)).))	chr9:33281199-33281478(+)$1	1	106	139	22.1334
((((.((................)).)))))))	chrX:102930521-102930775(-)$1	1	110	143	22.8253
(.(((((..((............))..))))).	chrX:153671437-153671682(+)$1	1	162	195	24.7877
))(((((((((.............)))))))))	chr5:176728472-176728693(-)$1	1	182	215	26.1211
(((((((((((............)).).)))))	chr17:45700015-45700305(+)$1	1	234	267	27.6653
..(((((((................))))))).	chr8:128753342-128753597(+)$1	1	137	170	25.1574
((((.((((((............))))))..))	chr1:150237741-150238008(-)$1	1	171	204	24.2897
((.((((((................))))))))	chr19:1010677-1010916(-)$1	1	135	168	22.5932
((((..((((((...........))))))..))	chr17:79524236-79524496(-)$1	1	151	184	23.6853
..((((((................))))))...	chr3:196074547-196074814(-)$1	1	204	237	23.5589
((..(((((((............))))))).))	chr7:151831945-151832175(-)$1	1	18	51	26.0972
(((.(((((..............))))).))).	chr17:74730214-74730494(-)$1	1	88	121	23.1945
(((....((..............))...))).)	chr1:226032902-226033157(-)$1	1	197	230	22.6509
(((...(((((............))))))))))	chr5:139918949-139919331(+)$1	1	191	224	25.1532
.((((((((((...........))))))))))(	chr8:26227914-26228156(+)$1	1	124	157	25.2639
..((..((.((............))))..))..	chr1:991123-991399(+)$1	1	176	209	23.9429
.(((((...((............)).))))).)	chr11:9302395-9302686(-)$1	1	187	220	25.1854
(((....((((...........))))...))))	chr5:34925556-34925836(+)$1	1	164	197	24.6232
.((((.((((((...........)).)).)).)	chr12:56989652-56989907(-)$1	1	129	162	22.3866
.((((.((((((...........))))))))))	chr19:975725-976005(+)$1	1	115	148	22.5248
.(((.(((((..............)))))))).	chr6:99847859-99848134(-)$1	1	224	257	24.3703
(((((((((((...........)))))))))))	chr15:34671226-34671540(-)$1	1	208	241	26.4725
..(((((((((.............)))))))))	chr3:183862662-183862922(+)$1	1	67	100	24.5901

#PSSM
= : 0.12	e : 0.12	g : 0.10	d : 0.10	f : 0.10	c : 0.10	[ : 0.08	: : 0.06	b : 0.05	! : 0.03	h : 0.03	" : 0.03	i : 0.01	# : 0.01	
e : 0.15	= : 0.13	d : 0.13	c : 0.12	g : 0.10	f : 0.08	i : 0.05	b : 0.05	h : 0.03	: : 0.03	" : 0.03	! : 0.01	[ : 0.01	# : 0.01	
= : 0.15	e : 0.15	g : 0.12	d : 0.10	f : 0.10	c : 0.10	i : 0.08	[ : 0.06	b : 0.03	h : 0.03	" : 0.01	! : 0.01	
= : 0.13	e : 0.13	! : 0.12	g : 0.10	f : 0.08	i : 0.08	b : 0.06	[ : 0.05	# : 0.05	d : 0.05	h : 0.03	c : 0.03	" : 0.03	
! : 0.17	= : 0.13	e : 0.12	g : 0.10	i : 0.08	[ : 0.06	f : 0.05	# : 0.05	d : 0.05	h : 0.03	c : 0.03	" : 0.03	b : 0.03	a : 0.01	
= : 0.13	! : 0.10	g : 0.10	[ : 0.10	d : 0.08	e : 0.08	f : 0.08	i : 0.08	c : 0.05	# : 0.05	a : 0.03	" : 0.03	h : 0.01	b : 0.01	
= : 0.13	e : 0.12	f : 0.12	d : 0.10	g : 0.10	i : 0.08	b : 0.06	c : 0.06	! : 0.05	[ : 0.05	# : 0.05	" : 0.03	
d : 0.15	= : 0.12	f : 0.12	e : 0.10	g : 0.10	b : 0.10	c : 0.08	i : 0.08	! : 0.03	[ : 0.03	" : 0.03	y : 0.01	
d : 0.17	e : 0.10	= : 0.10	g : 0.10	f : 0.10	c : 0.08	b : 0.06	i : 0.06	y : 0.05	[ : 0.03	a : 0.03	x : 0.01	w : 0.01	! : 0.01	" : 0.01	
w : 0.15	= : 0.10	d : 0.10	y : 0.10	e : 0.08	f : 0.08	b : 0.08	c : 0.06	g : 0.06	i : 0.06	[ : 0.03	x : 0.01	a : 0.01	
w : 0.22	y : 0.12	b : 0.10	f : 0.08	= : 0.08	d : 0.08	e : 0.06	v : 0.06	g : 0.05	c : 0.03	i : 0.03	x : 0.01	a : 0.01	
w : 0.25	u : 0.18	v : 0.15	t : 0.12	y : 0.12	g : 0.03	b : 0.03	f : 0.03	x : 0.01	= : 0.01	d : 0.01	
t : 0.25	w : 0.25	u : 0.18	v : 0.15	y : 0.12	x : 0.01	
t : 0.25	w : 0.25	u : 0.18	v : 0.15	y : 0.12	x : 0.01	
t : 0.25	w : 0.25	u : 0.18	v : 0.15	y : 0.12	x : 0.01	
t : 0.25	w : 0.25	u : 0.18	v : 0.15	y : 0.12	x : 0.01	
t : 0.25	w : 0.25	u : 0.18	v : 0.15	y : 0.12	x : 0.01	
t : 0.25	w : 0.25	u : 0.18	v : 0.15	y : 0.12	x : 0.01	
t : 0.25	w : 0.25	u : 0.18	v : 0.15	y : 0.12	x : 0.01	
t : 0.25	w : 0.25	u : 0.18	v : 0.15	y : 0.12	x : 0.01	
t : 0.25	w : 0.25	u : 0.18	v : 0.15	y : 0.12	x : 0.01	
t : 0.25	w : 0.25	u : 0.18	v : 0.15	y : 0.12	x : 0.01	
w : 0.24	u : 0.18	v : 0.15	t : 0.13	y : 0.12	e : 0.03	d : 0.03	= : 0.03	x : 0.01	a : 0.01	c : 0.01	
b : 0.18	d : 0.13	w : 0.10	y : 0.10	e : 0.08	v : 0.08	= : 0.06	g : 0.06	f : 0.06	c : 0.03	i : 0.03	] : 0.01	
b : 0.18	d : 0.15	e : 0.10	c : 0.10	= : 0.08	g : 0.08	f : 0.08	y : 0.06	i : 0.06	w : 0.03	a : 0.01	
d : 0.17	] : 0.13	g : 0.12	f : 0.12	e : 0.10	= : 0.10	c : 0.08	i : 0.06	2 : 0.03	y : 0.01	3 : 0.01	b : 0.01	
d : 0.15	e : 0.13	g : 0.12	f : 0.12	= : 0.10	c : 0.10	i : 0.06	a : 0.05	2 : 0.05	3 : 0.03	b : 0.03	h : 0.01	
] : 0.17	e : 0.13	g : 0.12	f : 0.12	2 : 0.10	= : 0.10	i : 0.06	d : 0.05	c : 0.03	3 : 0.03	h : 0.01	a : 0.01	b : 0.01	
= : 0.15	g : 0.13	e : 0.12	f : 0.12	2 : 0.08	i : 0.08	d : 0.06	] : 0.06	c : 0.06	h : 0.03	a : 0.01	b : 0.01	3 : 0.01	
= : 0.15	g : 0.15	f : 0.12	e : 0.12	c : 0.08	i : 0.08	b : 0.06	d : 0.06	] : 0.05	h : 0.03	2 : 0.03	3 : 0.01	
= : 0.15	g : 0.12	f : 0.12	e : 0.12	c : 0.10	i : 0.08	b : 0.05	3 : 0.05	d : 0.05	] : 0.05	h : 0.03	2 : 0.03	F : 0.01	
= : 0.15	g : 0.12	d : 0.10	e : 0.10	f : 0.08	i : 0.08	c : 0.06	] : 0.06	2 : 0.05	3 : 0.05	h : 0.03	b : 0.03	F : 0.01	: : 0.01	
= : 0.13	d : 0.13	2 : 0.08	f : 0.08	g : 0.08	] : 0.06	e : 0.06	i : 0.06	3 : 0.05	b : 0.05	h : 0.03	c : 0.03	4 : 0.01	F : 0.01	0 : 0.01	: : 0.01	D : 0.01	

#score	1418.1986023059485
#seq	58
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_CDS_m2_run1.txt

#BEAR
dddd^^^^^^^^^^^^^^^^^^^^^^^dddd22ddd	chr6:64289848-64290100(+)$1	252	85	121	39.3636
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]gggg	chr11:47786758-47787025(-)$1	267	85	121	44.5016
ffff^^^^^^^^^^^^^^^^^^^^^ffffff22eee	chr6:155126385-155126651(+)$1	266	86	122	36.1019
e^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee333	chr1:39796768-39797049(+)$1	281	76	112	43.7512
ccc^^^^^^^^^^^^^^^^^^^^^^^^^ccc333bb	chr20:48699313-48699566(-)$1	253	200	236	43.2009
ddd^^^^^^^^^^^^^^^^^^^^^^^^^dddd333b	chr2:171863015-171863271(-)$1	256	47	83	42.3101
cc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr1:186359706-186359987(+)$1	281	213	249	45.3753
^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]dd	chrX:129283411-129283646(-)$1	235	121	157	43.7305
cc[dddd^^^^^^^^^^^^^^^^^^^^^dddd]ccc	chr4:83763498-83763717(-)$1	219	35	71	36.9778
bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb===	chr1:145439664-145439916(+)$1	252	82	118	44.1173
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr2:209106702-209106982(-)$1	280	68	104	45.5258
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhh	chr6:158294018-158294306(+)$1	288	64	100	43.4942
ee^^^^^^^^^^^^^^^^^^^^^^^eeeee======	chr7:139813214-139813505(-)$1	291	101	137	39.6973
eeeee^^^^^^^^^^^^^^^^^^^^^^eeeee]ddd	chr1:78187454-78187724(-)$1	270	195	231	38.3532
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr9:134067483-134067711(+)$1	228	80	116	45.2768
c^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr1:109890009-109890272(-)$1	263	124	160	45.6530
[dddd^^^^^^^^^^^^^^^^^^^^^^^dddd]hhh	chr1:153617423-153617718(+)$1	295	48	84	39.1911
ggg^^^^^^^^^^^^^^^^^^^^^^^^^ggggggg:	chr1:145650382-145650632(+)$1	250	79	115	41.6354
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc22fff	chr18:2729171-2729431(+)$1	260	189	225	44.1750
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:57077851-57078142(-)$1	291	68	104	44.5789
f^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffffgg	chr18:2750008-2750220(+)$1	212	41	77	43.4780
cc[dddd^^^^^^^^^^^^^^^^^^^^^ddddccc7	chr5:38960458-38960739(-)$1	281	42	78	36.1196
ddbb^^^^^^^^^^^^^^^^^^^^^bb]ddddffff	chrX:110931005-110931257(+)$1	252	208	244	36.4612
b^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]dd	chr1:174241426-174241709(+)$1	283	92	128	44.2679
eeeee^^^^^^^^^^^^^^^^^^^^^^eeeee]eee	chr17:15406362-15406656(-)$1	294	231	267	38.4712
ggg^^^^^^^^^^^^^^^^^^^^^^^^^ggggggg]	chr12:122999151-122999421(-)$1	270	129	165	42.5410
==^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^===	chr12:107177660-107177912(+)$1	252	42	78	45.4910
^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]cc	chr2:171912926-171913185(-)$1	259	200	236	44.0375
g^^^^^^^^^^^^^^^^^^^^^^^^^^^ggggggg]	chr21:34823008-34823289(-)$1	281	102	138	43.9100
cc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc::ccc	chr11:85701292-85701566(-)$1	274	85	121	42.4061
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]b	chr10:61612322-61612570(-)$1	248	75	111	43.5036
gggg^^^^^^^^^^^^^^^^^^^^^^^^ggggggg:	chr11:46439447-46439728(-)$1	281	96	132	40.3399
bb^^^^^^^^^^^^^^^^^^^^^^^^bb]ccc]fff	chr5:150135893-150136164(-)$1	271	84	120	40.6010
ff^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff::	chr1:223946863-223947127(+)$1	264	6	42	41.0182
i^^^^^^^^^^^^^^^^^^^^^^^^^^^iiiiiiii	chr1:153614603-153614843(+)$1	240	84	120	43.8780
""dddd^^^^^^^^^^^^^^^^^^^^^dddd333cc	chr6:138195855-138196126(+)$1	271	221	257	37.6869
fff^^^^^^^^^^^^^^^^^^^^^^^^^ffffffff	chr2:190323367-190323660(+)$1	293	38	74	41.8129
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr17:57955533-57955835(-)$1	302	86	122	45.2768
ff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr5:126860096-126860356(+)$1	260	186	222	44.2675
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^iii	chr16:69680308-69680574(+)$1	266	69	105	45.8140
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bbggg	chr12:53836366-53836611(+)$1	245	80	116	44.8693
gg^^^^^^^^^^^^^^^^^^^^^^^ggggggg]bbc	chr1:26799863-26800136(+)$1	273	68	104	38.7353
====[ccc^^^^^^^^^^^^^^^^^^^^ccc]====	chr5:159437419-159437676(+)$1	257	32	68	36.6035
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr15:43690125-43690427(+)$1	302	75	111	44.2953
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ggg	chr5:158621671-158621945(-)$1	274	169	205	45.7864
cc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr9:134019844-134020072(+)$1	228	74	110	44.9615
===^^^^^^^^^^^^^^^^^^^^^^^^^========	chr3:156867635-156867878(-)$1	243	101	137	43.2163
dd^^^^^^^^^^^^^^^^^^^^^^^^dddd4444cc	chr1:59154624-59154904(-)$1	280	150	186	41.2389
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr6:135516786-135517046(+)$1	260	65	101	45.2768
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:70347620-70347883(+)$1	263	79	115	44.5789
ccc^^^^^^^^^^^^^^^^^^^^^^^^^ccc]ffff	chr11:85685719-85685961(-)$1	242	162	198	42.9322
cc^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]iii	chr1:173953615-173953870(-)$1	255	47	83	44.6034
ee^^^^^^^^^^^^^^^^^^^^^eeeee22ccc]cc	chr1:201838591-201838853(+)$1	262	99	135	35.8359
###ccc^^^^^^^^^^^^^^^^^^^^^^ccc=====	chr15:43317034-43317302(-)$1	268	21	57	39.9160
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr5:176917445-176917728(-)$1	283	98	134	45.5258
dddd^^^^^^^^^^^^^^^^^^^^^^^dddd22ggg	chr14:35497180-35497420(+)$1	240	24	60	39.8733
ccc^^^^^^^^^^^^^^^^^^^^^^^^^ccc]eeee	chr4:24538632-24538873(-)$1	241	171	207	42.7900

#otherMatches

#Seq PSSM
UUUCAUUUUUUUUUUUUUUUCCUCCCAGAAAGCGGC	chr6:64289848-64290100(+)$1	252	85	121	39.3636
uuuucuuuucuuuuuuuuuAAUCCAGAUGAACAGGA	chr11:47786758-47787025(-)$1	267	85	121	44.5016
AAAAUAUGUUUCCACCUGUUUUUCCUUUUAGUUCUC	chr6:155126385-155126651(+)$1	266	86	122	36.1019
uuuuuuuuuuuuuuuuuuuuuuuuuuuuAGGAAUGC	chr1:39796768-39797049(+)$1	281	76	112	43.7512
UGAUGUCUAAAGAAAAUAUGAAACUCCCUCAGCCGC	chr20:48699313-48699566(-)$1	253	200	236	43.2009
CCAUUUCCCCAUUGUGAUUCUGAAUUCUUGGAUAUU	chr2:171863015-171863271(-)$1	256	47	83	42.3101
CAUUAAUAUUCACAUCCCACUUUCUGCUACUUCUGU	chr1:186359706-186359987(+)$1	281	213	249	45.3753
GAGGAUGAAAAAAGAUACAAUGAAAGAAUUUCAGGG	chrX:129283411-129283646(-)$1	235	121	157	43.7305
AAUAAACUUGUAACUAAUUGAAAUUUCUGUUUCUUC	chr4:83763498-83763717(-)$1	219	35	71	36.9778
GCGUUUUAAAAUUUUCAUUUUCUUGACACAGGCCUC	chr1:145439664-145439916(+)$1	252	82	118	44.1173
AUCAAUUUUCUUUAUUAUUAUUCUCUUUUACCUUUU	chr2:209106702-209106982(-)$1	280	68	104	45.5258
AAUCUCAACUGUAAUCUUUUUCUUUUUUUUUUUUUU	chr6:158294018-158294306(+)$1	288	64	100	43.4942
CACCCCAUUUCCAUUCCUACAGAACUGAGAGAAGAU	chr7:139813214-139813505(-)$1	291	101	137	39.6973
AGAUGAACUAAAAGGUAAGAAAUAUAAUAUCUAUGG	chr1:78187454-78187724(-)$1	270	195	231	38.3532
uuuuuuuuuuuuuuuuuuuCCAUAAUUUCAGGGACA	chr9:134067483-134067711(+)$1	228	80	116	45.2768
AGACAACACCAUCUUCUUUACAACCUAUGCAAAUGG	chr1:109890009-109890272(-)$1	263	124	160	45.6530
UUUACUACAGCACCUAUUAAACUUACUUGUAACUGU	chr1:153617423-153617718(+)$1	295	48	84	39.1911
ACUCAUUCCUUUUCUCUUUAGUUUUUUAGGUGGUGG	chr1:145650382-145650632(+)$1	250	79	115	41.6354
AGAAUAUUAAAAAAGACCAGACGCUUAAAGCAAGAA	chr18:2729171-2729431(+)$1	260	189	225	44.1750
AUCUAAUCGUUGUUUCUUUGUCUGUUUUUUUUUCUU	chr11:57077851-57078142(-)$1	291	68	104	44.5789
UCAAACCAACAGCAUAAAACAGAUGAGAAAGGCAGG	chr18:2750008-2750220(+)$1	212	41	77	43.4780
GUUAAGAUUCUAAAAUAAUUGCUUCAUUUCUUACCU	chr5:38960458-38960739(-)$1	281	42	78	36.1196
UGGAUUACAAAAAUAAACACUAAACUCUCAACACUU	chrX:110931005-110931257(+)$1	252	208	244	36.4612
UUAUUUCUCCUUUUUUUCCCCCAAUAUUUUCAGAUG	chr1:174241426-174241709(+)$1	283	92	128	44.2679
GGAAGUUUCAUCAGGUAGACAUUAAUUCUUUCACGA	chr17:15406362-15406656(-)$1	294	231	267	38.4712
UUUUCUCCCUCAAAUAGACAAAAUACCUGAAACAGU	chr12:122999151-122999421(-)$1	270	129	165	42.5410
GCUAUUAAACGUAGCCAAAAUUAAAAAAUACAUGUA	chr12:107177660-107177912(+)$1	252	42	78	45.4910
CAUCUGUAAGUCAUCUUUCAAGUUUUUCAUGUGUAG	chr2:171912926-171913185(-)$1	259	200	236	44.0375
UUUUCCUAUCUUUCUAGCACUCUGAUCUACAAAUUU	chr21:34823008-34823289(-)$1	281	102	138	43.9100
CCUUUCUUCAUUUUGCUAUAAUACAUUUGGACUGCA	chr11:85701292-85701566(-)$1	274	85	121	42.4061
UUUGUUUUGUUCUUUCCUUUUUUUUUUUUAAACAGC	chr10:61612322-61612570(-)$1	248	75	111	43.5036
CUCUUUUUUUCCCUCUUUUCCUCUACCUAGAGAGUU	chr11:46439447-46439728(-)$1	281	96	132	40.3399
GGUUUUUUUUUUCUUUCUUGUUUCCUCCUAGGUGGA	chr5:150135893-150136164(-)$1	271	84	120	40.6010
AGCCACCACACUACCCAACUGCUUUUAUCUCAGUGA	chr1:223946863-223947127(+)$1	264	6	42	41.0182
GAUCUCAAUCCCCUAACACCUUUUCUUCCAGAAGAG	chr1:153614603-153614843(+)$1	240	84	120	43.8780
AAGGAAACAGACACACGCAACUUUAAAUUCCGCUGG	chr6:138195855-138196126(+)$1	271	221	257	37.6869
CUUUUACUUAACUACAUCACCACUUAUCAAGAGACU	chr2:190323367-190323660(+)$1	293	38	74	41.8129
aucuuaaccauuauucucuccuACCUUUCUUUUUUC	chr17:57955533-57955835(-)$1	302	86	122	45.2768
CAUACUCUACUCCUCAGCCGCCCCUUCCUCCUGUGA	chr5:126860096-126860356(+)$1	260	186	222	44.2675
AGCAGCUCUUUUCUCAUUUAUUUUCUCAUAUUUUUA	chr16:69680308-69680574(+)$1	266	69	105	45.8140
UCAUCUUUUUUGCCUCAUUUCUUUCUCCUCAGGCUG	chr12:53836366-53836611(+)$1	245	80	116	44.8693
ACCACCUCAAAAUCUGCAGUUUUUUGUUCUUGUUUC	chr1:26799863-26800136(+)$1	273	68	104	38.7353
AACUUUUAAAAAUACAAGCACCAUUAUAUAGCAGUU	chr5:159437419-159437676(+)$1	257	32	68	36.6035
GUUAUCUUUUCUUUUUUUCUUUUCUUUUAUCACAGC	chr15:43690125-43690427(+)$1	302	75	111	44.2953
UAUCUAUAUUUUUUGACUGCUCUGCUCCUCUAUGCU	chr5:158621671-158621945(-)$1	274	169	205	45.7864
GCCCAUCAACCUUCUCUUUUGUUCCCCCUUCUAAAG	chr9:134019844-134020072(+)$1	228	74	110	44.9615
UCCUCCAACAGCCAAACUAUGAAUUACUGGAAAAAG	chr3:156867635-156867878(-)$1	243	101	137	43.2163
GUAAAGUGGACGAUAGAAGAAAAAGAGCUGUUUGAA	chr1:59154624-59154904(-)$1	280	150	186	41.2389
UCUCUUUAUUUCUACACCCUUCCCCCUUCCUUAGAC	chr6:135516786-135517046(+)$1	260	65	101	45.2768
GGCCUUCUUCAACACUACUAUCUCCUUUCCUCCAUC	chrX:70347620-70347883(+)$1	263	79	115	44.5789
GCCUGUCAUGAGACCUCCAAACCCCUUUGGCCCUGU	chr11:85685719-85685961(-)$1	242	162	198	42.9322
AAACUAUACUAAAUAAAACAAUUAAUGAAUUGAGCA	chr1:173953615-173953870(-)$1	255	47	83	44.6034
GACUUUUCUUUUUCUUCUCUCUUUCAGACAGCCAUU	chr1:201838591-201838853(+)$1	262	99	135	35.8359
AACCUAUUAUUUUUUGACAUUUGCACUUUAGUAUGU	chr15:43317034-43317302(-)$1	268	21	57	39.9160
cuuccacuucuuccucccuCUCUCUCUGCCCCUCAG	chr5:176917445-176917728(-)$1	283	98	134	45.5258
UCAGUUCAUCAAACUUUCUAUUAUACCCUGAUUAUA	chr14:35497180-35497420(+)$1	240	24	60	39.8733
GCUGAACGUCUACCAUGCUUUUAAACAAAGUAAGUG	chr4:24538632-24538873(-)$1	241	171	207	42.7900

#DB
((((.......................))))..)))	chr6:64289848-64290100(+)$1	1	85	121	39.3636
............................))).))))	chr11:47786758-47787025(-)$1	1	85	121	44.5016
((((.....................))))))..)))	chr6:155126385-155126651(+)$1	1	86	122	36.1019
(...........................)))))...	chr1:39796768-39797049(+)$1	1	76	112	43.7512
(((.........................)))...))	chr20:48699313-48699566(-)$1	1	200	236	43.2009
(((.........................))))...)	chr2:171863015-171863271(-)$1	1	47	83	42.3101
((...............................)))	chr1:186359706-186359987(+)$1	1	213	249	45.3753
............................))))).))	chrX:129283411-129283646(-)$1	1	121	157	43.7305
((.((((.....................)))).)))	chr4:83763498-83763717(-)$1	1	35	71	36.9778
((.............................)))))	chr1:145439664-145439916(+)$1	1	82	118	44.1173
.................................)))	chr2:209106702-209106982(-)$1	1	68	104	45.5258
((..............................))))	chr6:158294018-158294306(+)$1	1	64	100	43.4942
((.......................)))))))))))	chr7:139813214-139813505(-)$1	1	101	137	39.6973
(((((......................))))).)))	chr1:78187454-78187724(-)$1	1	195	231	38.3532
.................................)))	chr9:134067483-134067711(+)$1	1	80	116	45.2768
(................................)))	chr1:109890009-109890272(-)$1	1	124	160	45.6530
.((((.......................)))).)))	chr1:153617423-153617718(+)$1	1	48	84	39.1911
(((.........................))))))).	chr1:145650382-145650632(+)$1	1	79	115	41.6354
............................)))..)))	chr18:2729171-2729431(+)$1	1	189	225	44.1750
((..................................	chr11:57077851-57078142(-)$1	1	68	104	44.5789
(...........................))))))))	chr18:2750008-2750220(+)$1	1	41	77	43.4780
((.((((.....................))))))).	chr5:38960458-38960739(-)$1	1	42	78	36.1196
((((.....................)).))))))))	chrX:110931005-110931257(+)$1	1	208	244	36.4612
(..............................)).))	chr1:174241426-174241709(+)$1	1	92	128	44.2679
(((((......................))))).)))	chr17:15406362-15406656(-)$1	1	231	267	38.4712
(((.........................))))))).	chr12:122999151-122999421(-)$1	1	129	165	42.5410
((...............................)))	chr12:107177660-107177912(+)$1	1	42	78	45.4910
............................))))).))	chr2:171912926-171913185(-)$1	1	200	236	44.0375
(...........................))))))).	chr21:34823008-34823289(-)$1	1	102	138	43.9100
((..........................)))..(((	chr11:85701292-85701566(-)$1	1	85	121	42.4061
((...........................))))).)	chr10:61612322-61612570(-)$1	1	75	111	43.5036
((((........................))))))).	chr11:46439447-46439728(-)$1	1	96	132	40.3399
((........................)).))).)))	chr5:150135893-150136164(-)$1	1	84	120	40.6010
((..........................))))))..	chr1:223946863-223947127(+)$1	1	6	42	41.0182
(...........................))))))))	chr1:153614603-153614843(+)$1	1	84	120	43.8780
..((((.....................))))...))	chr6:138195855-138196126(+)$1	1	221	257	37.6869
(((.........................))))))((	chr2:190323367-190323660(+)$1	1	38	74	41.8129
.................................)))	chr17:57955533-57955835(-)$1	1	86	122	45.2768
((.............................)))))	chr5:126860096-126860356(+)$1	1	186	222	44.2675
.................................)))	chr16:69680308-69680574(+)$1	1	69	105	45.8140
...............................)))))	chr12:53836366-53836611(+)$1	1	80	116	44.8693
((.......................))))))).)))	chr1:26799863-26800136(+)$1	1	68	104	38.7353
((((.(((....................))).))))	chr5:159437419-159437676(+)$1	1	32	68	36.6035
((.............................)))))	chr15:43690125-43690427(+)$1	1	75	111	44.2953
.................................)))	chr5:158621671-158621945(-)$1	1	169	205	45.7864
((.................................)	chr9:134019844-134020072(+)$1	1	74	110	44.9615
(((.........................))))))))	chr3:156867635-156867878(-)$1	1	101	137	43.2163
((........................))))....))	chr1:59154624-59154904(-)$1	1	150	186	41.2389
.................................)))	chr6:135516786-135517046(+)$1	1	65	101	45.2768
((..................................	chrX:70347620-70347883(+)$1	1	79	115	44.5789
(((.........................))).))))	chr11:85685719-85685961(-)$1	1	162	198	42.9322
((...........................))).)))	chr1:173953615-173953870(-)$1	1	47	83	44.6034
((.....................)))))..))).))	chr1:201838591-201838853(+)$1	1	99	135	35.8359
...(((......................))))))))	chr15:43317034-43317302(-)$1	1	21	57	39.9160
.................................)))	chr5:176917445-176917728(-)$1	1	98	134	45.5258
((((.......................))))..)))	chr14:35497180-35497420(+)$1	1	24	60	39.8733
(((.........................))).))))	chr4:24538632-24538873(-)$1	1	171	207	42.7900

#PSSM
^ : 0.21	c : 0.17	e : 0.15	d : 0.08	f : 0.08	g : 0.08	b : 0.05	= : 0.05	h : 0.01	[ : 0.01	i : 0.01	" : 0.01	# : 0.01	
^ : 0.31	c : 0.15	e : 0.14	d : 0.10	f : 0.07	g : 0.07	= : 0.05	b : 0.03	h : 0.01	" : 0.01	# : 0.01	
^ : 0.63	d : 0.08	c : 0.05	g : 0.05	f : 0.03	[ : 0.03	e : 0.03	= : 0.03	b : 0.01	# : 0.01	
^ : 0.77	d : 0.10	e : 0.03	f : 0.01	b : 0.01	g : 0.01	= : 0.01	c : 0.01	
^ : 0.85	d : 0.07	e : 0.03	[ : 0.01	c : 0.01	
^ : 0.91	d : 0.05	c : 0.03	
^ : 0.94	d : 0.03	c : 0.01	
^ : 0.98	c : 0.01	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.98	e : 0.01	
^ : 0.98	e : 0.01	
^ : 0.91	e : 0.03	f : 0.01	b : 0.01	g : 0.01	
^ : 0.87	e : 0.03	b : 0.03	f : 0.01	g : 0.01	d : 0.01	
^ : 0.78	d : 0.07	e : 0.07	f : 0.01	] : 0.01	b : 0.01	g : 0.01	
^ : 0.36	d : 0.15	c : 0.14	e : 0.10	g : 0.08	f : 0.07	] : 0.01	i : 0.01	= : 0.01	2 : 0.01	
^ : 0.33	c : 0.17	d : 0.15	e : 0.12	g : 0.08	f : 0.07	i : 0.01	= : 0.01	2 : 0.01	
^ : 0.33	c : 0.19	d : 0.14	e : 0.10	g : 0.08	f : 0.07	= : 0.03	i : 0.01	4 : 0.01	
^ : 0.24	e : 0.12	d : 0.08	g : 0.08	2 : 0.07	] : 0.07	f : 0.07	b : 0.05	= : 0.05	c : 0.05	3 : 0.03	: : 0.01	i : 0.01	4 : 0.01	
^ : 0.22	] : 0.12	e : 0.10	f : 0.10	g : 0.08	2 : 0.07	= : 0.07	3 : 0.05	b : 0.05	c : 0.03	h : 0.01	: : 0.01	i : 0.01	4 : 0.01	
f : 0.17	g : 0.14	= : 0.10	d : 0.08	e : 0.08	c : 0.08	3 : 0.07	] : 0.07	^ : 0.05	i : 0.05	h : 0.03	b : 0.01	4 : 0.01	
g : 0.15	c : 0.15	f : 0.14	d : 0.12	= : 0.10	e : 0.07	^ : 0.05	i : 0.05	3 : 0.03	b : 0.03	h : 0.03	] : 0.01	: : 0.01	
c : 0.17	f : 0.14	d : 0.12	= : 0.10	g : 0.08	e : 0.07	b : 0.05	: : 0.05	i : 0.05	h : 0.03	^ : 0.03	] : 0.03	3 : 0.01	7 : 0.01	

#score	2409.434500211051
#seq	57
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF545FMX_NPM1_UTR_m3_run1.txt

#BEAR
ffffff[ccc[bbcccooooooccc4444bbccc]fff	chr19:8538961-8539228(+)$1	267	50	88	25.7745
ffffffiiiiiiiiiooooooiiiiiiiii333fffff	chr9:100777544-100777870(+)$1	326	19	57	22.0109
ffffff[ccc^^^^^^^^^^^^^^^^^^^^ccc]ffff	chr2:61764756-61765004(-)$1	248	5	43	26.0183

#otherMatches

#Seq PSSM
UCUUGUUGGAUGAUGCUGAAAUGUGAACCUCUCUUGCA	chr19:8538961-8539228(+)$1	267	50	88	25.7745
UUUGUUGUUGUUGCCUCCAUUGGCAAUAAUCUAAGCAA	chr9:100777544-100777870(+)$1	326	19	57	22.0109
GUUCCCUCCCCCUUCCCUCACUCCCCAGCCGGGCGGGA	chr2:61764756-61765004(-)$1	248	5	43	26.0183

#DB
((((((.(((.(((((......)))....))))).)))	chr19:8538961-8539228(+)$1	1	50	88	25.7745
(((((((((((((((......)))))))))...)))))	chr9:100777544-100777870(+)$1	1	19	57	22.0109
((((((.(((....................))).))))	chr2:61764756-61765004(-)$1	1	5	43	26.0183

#PSSM
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
[ : 0.66	i : 0.33	
c : 0.66	i : 0.33	
c : 0.66	i : 0.33	
c : 0.66	i : 0.33	
[ : 0.33	i : 0.33	^ : 0.33	
b : 0.33	i : 0.33	^ : 0.33	
b : 0.33	i : 0.33	^ : 0.33	
c : 0.33	i : 0.33	^ : 0.33	
c : 0.33	i : 0.33	^ : 0.33	
c : 0.33	o : 0.33	^ : 0.33	
o : 0.66	^ : 0.33	
o : 0.66	^ : 0.33	
o : 0.66	^ : 0.33	
o : 0.66	^ : 0.33	
o : 0.66	^ : 0.33	
o : 0.33	i : 0.33	^ : 0.33	
c : 0.33	i : 0.33	^ : 0.33	
c : 0.33	i : 0.33	^ : 0.33	
c : 0.33	i : 0.33	^ : 0.33	
4 : 0.33	i : 0.33	^ : 0.33	
4 : 0.33	i : 0.33	^ : 0.33	
4 : 0.33	i : 0.33	^ : 0.33	
4 : 0.33	i : 0.33	^ : 0.33	
b : 0.33	i : 0.33	^ : 0.33	
b : 0.33	3 : 0.33	c : 0.33	
c : 0.66	3 : 0.33	
c : 0.66	3 : 0.33	
c : 0.33	f : 0.33	] : 0.33	
f : 0.66	] : 0.33	
f : 1.00	
f : 1.00	
f : 1.00	

#score	73.80377623410001
#seq	3
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_UTR_m3_run1.txt

#BEAR
eeeevvvvvvvvvvvvveee	chr11:62608986-62609222(-)$1	236	95	115	22.7294
eeeeettttttttttteeee	chr19:40536604-40536890(-)$1	286	188	208	21.2266
[cccvvvvvvvvvvvvvccc	chr8:120255858-120256070(+)$1	212	58	78	22.8679
dddduuuuuuuuuuuudddd	chr6:132214795-132215053(+)$1	258	96	116	22.4627
##bbuuuuuuuuuuuubb22	chr19:54610231-54610505(+)$1	274	30	50	21.3748
cc[auuuuuuuuuuuua]cc	chr11:58386403-58386658(+)$1	255	169	189	22.4809
eeeewwwwwwwwwwwwwwee	chr5:41918341-41918666(+)$1	325	51	71	21.6048
eeeeuuuuuuuuuuuueeee	chr2:38960966-38961222(+)$1	256	88	108	22.4035
#ddddtttttttttttdddd	chr1:19543417-19543680(-)$1	263	137	157	21.2175
hhhvvvvvvvvvvvvvhhhh	chr6:30692620-30692883(+)$1	263	65	85	20.3525
:cccvvvvvvvvvvvvvccc	chr11:63765247-63765531(+)$1	284	95	115	21.8379
ddddvvvvvvvvvvvvvddd	chr6:36199418-36199670(+)$1	252	4	24	22.7629
c[ccctttttttttttccc]	chr15:96874014-96874292(+)$1	278	72	92	21.7758
eeeeuuuuuuuuuuuueeee	chr17:4851346-4851602(-)$1	256	128	148	22.4035
ddddvvvvvvvvvvvvvddd	chr6:36199279-36199530(+)$1	251	143	163	22.7629
b[ccctttttttttttccc]	chr16:70190892-70191156(+)$1	264	207	227	21.5489
ddddtttttttttttdddd:	chr17:8063742-8064011(-)$1	269	80	100	19.9682
eeeewwwwwwwwwwwwwwee	chr12:57452453-57452729(-)$1	276	145	165	21.6048
!!bbvvvvvvvvvvvvvbb2	chrX:48328315-48328620(-)$1	305	71	91	21.9520
cccyyyyyyyyyyyyyyyyc	chrX:106184467-106184725(-)$1	258	27	47	19.7628
ddddvvvvvvvvvvvvvddd	chr10:102120848-102121059(+)$1	211	27	47	22.7629
cccvvvvvvvvvvvvvccc3	chr11:63765675-63765912(+)$1	237	87	107	22.1637
gggawwwwwwwwwwwwwwa]	chr19:5140296-5140552(+)$1	256	148	168	21.5648
eeeeettttttttttteeee	chr20:35090553-35090822(+)$1	269	151	171	21.2266
gggawwwwwwwwwwwwwwa]	chr19:5140355-5140586(+)$1	231	89	109	21.5648
eeeeettttttttttteeee	chr20:8783006-8783268(+)$1	262	188	208	21.2266
cddddtttttttttttdddd	chr2:85548047-85548272(-)$1	225	146	166	21.2721
dddduuuuuuuuuuuudddd	chr17:57778102-57778399(-)$1	297	78	98	22.4627
eeeewwwwwwwwwwwwwwee	chr5:92919153-92919363(+)$1	210	131	151	21.6048
b[bbuuuuuuuuuuuubb]b	chr7:92235645-92235902(-)$1	257	211	231	21.2727
[ddddtttttttttttdddd	chr14:39618483-39618732(-)$1	249	99	119	21.3363
ddddyyyyyyyyyyyyyyyy	chr5:34956401-34956663(+)$1	262	43	63	19.8710
====vvvvvvvvvvvvv===	chr6:35393967-35394309(+)$1	342	285	305	22.7143
&bbvvvvvvvvvvvvvbb22	chr17:6905498-6905788(-)$1	290	43	63	20.2091
dddduuuuuuuuuuuudddd	chr10:60996032-60996387(+)$1	355	192	212	22.4627
!cccvvvvvvvvvvvvvccc	chr14:69926342-69926627(+)$1	285	94	114	22.8705
bddddtttttttttttdddd	chr8:101931053-101931349(-)$1	296	194	214	21.0452
dddduuuuuuuuuuuudddd	chr12:49330395-49330684(-)$1	289	59	79	22.4627
ffffftttttttttttffff	chr2:220047587-220047840(+)$1	253	220	240	20.3311
[ayyyyyyyyyyyyyyyya]	chr11:57585440-57585689(+)$1	249	194	214	19.6319
!!bbuuuuuuuuuuuubb22	chr11:6635283-6635524(-)$1	241	121	141	21.6659
eeeeuuuuuuuuuuuueeee	chr8:566463-566739(-)$1	276	2	22	22.4035
iiiivvvvvvvvvvvvviii	chr11:64532544-64532802(-)$1	258	189	209	22.5258
e[ccctttttttttttccc]	chr15:44086676-44086981(+)$1	305	6	26	21.8318
hhhhuuuuuuuuuuuuhhhh	chr1:110564277-110564525(+)$1	248	170	190	20.6914
:cccuuuuuuuuuuuuccc:	chrX:48780161-48780465(-)$1	304	86	106	20.8817
ddddvvvvvvvvvvvvvddd	chr2:85281822-85282126(+)$1	304	57	77	22.7629
eeeeuuuuuuuuuuuueeee	chr2:220047671-220047986(+)$1	315	138	158	22.4035
cccvvvvvvvvvvvvvccc]	chr19:45912070-45912316(-)$1	246	213	233	22.1852
ffffwwwwwwwwwwwwwwff	chr1:45279519-45279782(+)$1	263	224	244	20.8568
[cccvvvvvvvvvvvvvccc	chr8:30406992-30407253(+)$1	261	92	112	22.8679
eeeeuuuuuuuuuuuueeee	chr12:58216080-58216341(-)$1	261	76	96	22.4035
ecccuuuuuuuuuuuuccc:	chr2:27875517-27875823(-)$1	306	257	277	21.9035
g!!avvvvvvvvvvvvva22	chr2:219269138-219269424(+)$1	286	102	122	22.5266
ffbbvvvvvvvvvvvvvbb]	chr1:109816461-109816799(+)$1	338	84	104	21.8558
ffffwwwwwwwwwwwwwwff	chr7:100164293-100164562(+)$1	269	49	69	20.8568
b[bbuuuuuuuuuuuubb]b	chr9:139917409-139917703(-)$1	294	57	77	21.2727
eeeeyyyyyyyyyyyyyyyy	chr5:114859435-114859730(-)$1	295	81	101	19.8738
====uuuuuuuuuuuu====	chr1:173861388-173861645(+)$1	257	12	32	22.5082
eeeevvvvvvvvvvvvveee	chrX:122735240-122735498(-)$1	258	55	75	22.7294
f!!bbtttttttttttbb22	chr16:69731889-69732173(+)$1	284	140	160	20.4289
ddddwwwwwwwwwwwwwwdd	chrX:40509372-40509644(-)$1	272	64	84	21.5973
ffffyyyyyyyyyyyyyyyy	chrX:48328079-48328347(-)$1	268	60	80	19.3978
ffffftttttttttttffff	chr17:61670176-61670447(+)$1	271	164	184	20.3311
eeeewwwwwwwwwwwwwwee	chr7:100164530-100164766(+)$1	236	128	148	21.6048
ddddtttttttttttdddd:	chr11:118267312-118267567(+)$1	255	81	101	19.9682
#cccuuuuuuuuuuuuccc4	chr20:34820054-34820317(+)$1	263	16	36	22.6320
ffffvvvvvvvvvvvvvfff	chr14:24038494-24038826(-)$1	332	159	179	21.8993
ffffuuuuuuuuuuuuffff	chr1:36388033-36388321(+)$1	288	39	59	21.5208
ddddwwwwwwwwwwwwwwdd	chr4:129192032-129192294(-)$1	262	88	108	21.5973
ddddwwwwwwwwwwwwwwdd	chr3:53265383-53265666(-)$1	283	182	202	21.5973
ddddyyyyyyyyyyyyyyyy	chr11:111608675-111608934(-)$1	259	54	74	19.8710
=====ttttttttttt====	chr3:196083180-196083529(-)$1	349	51	71	21.3167

#otherMatches

#Seq PSSM
cugguauugcaguacuucca	chr11:62608986-62609222(-)$1	236	95	115	22.7294
CUGGGUCAUUGCACAUCCCG	chr19:40536604-40536890(-)$1	286	188	208	21.2266
AAUGGCCUUUUAUUUUACAU	chr8:120255858-120256070(+)$1	212	58	78	22.8679
UUUCUUUUCUUUUCUUGAAA	chr6:132214795-132215053(+)$1	258	96	116	22.4627
AAACCAACCCCCGAACGUGA	chr19:54610231-54610505(+)$1	274	30	50	21.3748
GAGUCCUAAAAUUUUAAGUC	chr11:58386403-58386658(+)$1	255	169	189	22.4809
CUGAUAACUGCCCUCUUUUC	chr5:41918341-41918666(+)$1	325	51	71	21.6048
AAGCUAUUCUCACAUUGCUU	chr2:38960966-38961222(+)$1	256	88	108	22.4035
UCCUGUCUUCAUUAAUUAGG	chr1:19543417-19543680(-)$1	263	137	157	21.2175
CCCAUCUCAGCUUCAAGGGA	chr6:30692620-30692883(+)$1	263	65	85	20.3525
UGCUUCCUUCCCUUCUUAGC	chr11:63765247-63765531(+)$1	284	95	115	21.8379
GCCACCAAACAUCUUCCUGG	chr6:36199418-36199670(+)$1	252	4	24	22.7629
CCGAGUUGCCUCCUUUCUCC	chr15:96874014-96874292(+)$1	278	72	92	21.7758
GGGCGCGCAGCGAGAGGCCC	chr17:4851346-4851602(-)$1	256	128	148	22.4035
GCCACCAAACAUCUUCCUGG	chr6:36199279-36199530(+)$1	251	143	163	22.7629
GCUGCUUUCAAAUUCUGCAU	chr16:70190892-70191156(+)$1	264	207	227	21.5489
GAGGUUCCCUUCACCCCUCU	chr17:8063742-8064011(-)$1	269	80	100	19.9682
CCCAUACUCCCCCAAAUCUG	chr12:57452453-57452729(-)$1	276	145	165	21.6048
CUACUACCCCUGCACCUGUU	chrX:48328315-48328620(-)$1	305	71	91	21.9520
GUAUACCCUUCUCUUCUCUU	chrX:106184467-106184725(-)$1	258	27	47	19.7628
GAUAUUAUUUCUUCUCUUAU	chr10:102120848-102121059(+)$1	211	27	47	22.7629
GCAUUGCCUGCCUUUUUGCC	chr11:63765675-63765912(+)$1	237	87	107	22.1637
GCCCAGAAAGAAGAUGAGGA	chr19:5140296-5140552(+)$1	256	148	168	21.5648
CCGAGCACCCCCACUUCUCG	chr20:35090553-35090822(+)$1	269	151	171	21.2266
GCCCAGAAAGAAGAUGAGGA	chr19:5140355-5140586(+)$1	231	89	109	21.5648
ACUACACUGUUUUCCCGUGG	chr20:8783006-8783268(+)$1	262	188	208	21.2266
UCAACUUCUCCAGUAUGUUG	chr2:85548047-85548272(-)$1	225	146	166	21.2721
GCAAUCCUGCCAUAUUUUGC	chr17:57778102-57778399(-)$1	297	78	98	22.4627
UCGUUAUUUUAUACAUAUAU	chr5:92919153-92919363(+)$1	210	131	151	21.6048
GCCACCACUCCCAACUUGAC	chr7:92235645-92235902(-)$1	257	211	231	21.2727
UAAGCAGUUAUCUCCAGCUU	chr14:39618483-39618732(-)$1	249	99	119	21.3363
UAUGUUUUUUUCUUUACCUU	chr5:34956401-34956663(+)$1	262	43	63	19.8710
UUUGCACACCUUUUCCCCAG	chr6:35393967-35394309(+)$1	342	285	305	22.7143
GGCUUUUCUCUCUCUUGCAC	chr17:6905498-6905788(-)$1	290	43	63	20.2091
uCCUUCUUUCAUUCCUAGGA	chr10:60996032-60996387(+)$1	355	192	212	22.4627
CAUGUCUCUUGUCUCUUCGU	chr14:69926342-69926627(+)$1	285	94	114	22.8705
AUGGGGCUAAGUUAUACCCA	chr8:101931053-101931349(-)$1	296	194	214	21.0452
CAACUCAUUCACUGCUGUUG	chr12:49330395-49330684(-)$1	289	59	79	22.4627
UGCUGUGUCCUGUCCUUAGC	chr2:220047587-220047840(+)$1	253	220	240	20.3311
UCUCUCUUGUCCUCUUCUGC	chr11:57585440-57585689(+)$1	249	194	214	19.6319
CCGUUUACUCUUUCCUACCC	chr11:6635283-6635524(-)$1	241	121	141	21.6659
gcuucccuaucucucugagu	chr8:566463-566739(-)$1	276	2	22	22.4035
GUGGGUUUUUCAAGGUGCCA	chr11:64532544-64532802(-)$1	258	189	209	22.5258
GUGGUUUUGUCUUCCCGCUU	chr15:44086676-44086981(+)$1	305	6	26	21.8318
UUCUGCAGACCACACAGGAA	chr1:110564277-110564525(+)$1	248	170	190	20.6914
UGGCUUCUUCCCUCUUGCCU	chrX:48780161-48780465(-)$1	304	86	106	20.8817
AGACUUAACCUAAUCAUGUC	chr2:85281822-85282126(+)$1	304	57	77	22.7629
CUGUGUCCUGUCCUUAGCAG	chr2:220047671-220047986(+)$1	315	138	158	22.4035
GCCUCUUUCUCUUUUUGGUC	chr19:45912070-45912316(-)$1	246	213	233	22.1852
CGUCUACUAGUCUAUUCUGA	chr1:45279519-45279782(+)$1	263	224	244	20.8568
GGCCUGGUUUCCUGUUUGGU	chr8:30406992-30407253(+)$1	261	92	112	22.8679
AGCCUUCAUCCUUCCUGGCU	chr12:58216080-58216341(-)$1	261	76	96	22.4035
UGCAUAUUUCAUUUGUUGCA	chr2:27875517-27875823(-)$1	306	257	277	21.9035
GGCCGCCGCCACACUCAGUG	chr2:219269138-219269424(+)$1	286	102	122	22.5266
UCCUGUUUCCUUCGUCUGGU	chr1:109816461-109816799(+)$1	338	84	104	21.8558
GCCCUCCUUCUGUCUCCUGG	chr7:100164293-100164562(+)$1	269	49	69	20.8568
CCGccuucucccuaacgcug	chr9:139917409-139917703(-)$1	294	57	77	21.2727
AAAGUCUUUUUUUCUUGCUU	chr5:114859435-114859730(-)$1	295	81	101	19.8738
AUGUCAAUUUAAAUAUGCAU	chr1:173861388-173861645(+)$1	257	12	32	22.5082
GAACUCAUUAACUUCUUGUU	chrX:122735240-122735498(-)$1	258	55	75	22.7294
CUUUCUUUCUCUCUCUGAUU	chr16:69731889-69732173(+)$1	284	140	160	20.4289
UUGAUUCUCCACUCAUUUUC	chrX:40509372-40509644(-)$1	272	64	84	21.5973
GAGCCUAUCCCUACCCACCU	chrX:48328079-48328347(-)$1	268	60	80	19.3978
GCUGUGAAGACAUGUAGCAG	chr17:61670176-61670447(+)$1	271	164	184	20.3311
CCGGCAUCUCCUCACUAUCU	chr7:100164530-100164766(+)$1	236	128	148	21.6048
GAAAUCAUCACUAAUUUUCA	chr11:118267312-118267567(+)$1	255	81	101	19.9682
AGGGCACUGUUUCCUCCCCA	chr20:34820054-34820317(+)$1	263	16	36	22.6320
CAGAUUAUCUCAUUUCUUCU	chr14:24038494-24038826(-)$1	332	159	179	21.8993
CAGCCUCAUCCUCUUAGUUG	chr1:36388033-36388321(+)$1	288	39	59	21.5208
AAAGUCACAAUAUUACuucu	chr4:129192032-129192294(-)$1	262	88	108	21.5973
GAUCCAGAGCAAAAAGAAGA	chr3:53265383-53265666(-)$1	283	182	202	21.5973
ACUGUUUCCCUUUGAUUCUC	chr11:111608675-111608934(-)$1	259	54	74	19.8710
GGCUCAUAGGACCACAGAGC	chr3:196083180-196083529(-)$1	349	51	71	21.3167

#DB
((((.............)))	chr11:62608986-62609222(-)$1	1	95	115	22.7294
(((((...........))))	chr19:40536604-40536890(-)$1	1	188	208	21.2266
.(((.............)))	chr8:120255858-120256070(+)$1	1	58	78	22.8679
((((............))))	chr6:132214795-132215053(+)$1	1	96	116	22.4627
..((............))..	chr19:54610231-54610505(+)$1	1	30	50	21.3748
((.(............).))	chr11:58386403-58386658(+)$1	1	169	189	22.4809
((((..............))	chr5:41918341-41918666(+)$1	1	51	71	21.6048
((((............))))	chr2:38960966-38961222(+)$1	1	88	108	22.4035
.((((...........))))	chr1:19543417-19543680(-)$1	1	137	157	21.2175
(((.............))))	chr6:30692620-30692883(+)$1	1	65	85	20.3525
.(((.............)))	chr11:63765247-63765531(+)$1	1	95	115	21.8379
((((.............)))	chr6:36199418-36199670(+)$1	1	4	24	22.7629
(.(((...........))).	chr15:96874014-96874292(+)$1	1	72	92	21.7758
((((............))))	chr17:4851346-4851602(-)$1	1	128	148	22.4035
((((.............)))	chr6:36199279-36199530(+)$1	1	143	163	22.7629
(.(((...........))).	chr16:70190892-70191156(+)$1	1	207	227	21.5489
((((...........)))).	chr17:8063742-8064011(-)$1	1	80	100	19.9682
((((..............))	chr12:57452453-57452729(-)$1	1	145	165	21.6048
..((.............)).	chrX:48328315-48328620(-)$1	1	71	91	21.9520
(((................)	chrX:106184467-106184725(-)$1	1	27	47	19.7628
((((.............)))	chr10:102120848-102121059(+)$1	1	27	47	22.7629
(((.............))).	chr11:63765675-63765912(+)$1	1	87	107	22.1637
((((..............).	chr19:5140296-5140552(+)$1	1	148	168	21.5648
(((((...........))))	chr20:35090553-35090822(+)$1	1	151	171	21.2266
((((..............).	chr19:5140355-5140586(+)$1	1	89	109	21.5648
(((((...........))))	chr20:8783006-8783268(+)$1	1	188	208	21.2266
(((((...........))))	chr2:85548047-85548272(-)$1	1	146	166	21.2721
((((............))))	chr17:57778102-57778399(-)$1	1	78	98	22.4627
((((..............))	chr5:92919153-92919363(+)$1	1	131	151	21.6048
(.((............)).)	chr7:92235645-92235902(-)$1	1	211	231	21.2727
.((((...........))))	chr14:39618483-39618732(-)$1	1	99	119	21.3363
((((................	chr5:34956401-34956663(+)$1	1	43	63	19.8710
((((.............)))	chr6:35393967-35394309(+)$1	1	285	305	22.7143
.((.............))..	chr17:6905498-6905788(-)$1	1	43	63	20.2091
((((............))))	chr10:60996032-60996387(+)$1	1	192	212	22.4627
.(((.............)))	chr14:69926342-69926627(+)$1	1	94	114	22.8705
)((((...........))))	chr8:101931053-101931349(-)$1	1	194	214	21.0452
((((............))))	chr12:49330395-49330684(-)$1	1	59	79	22.4627
(((((...........))))	chr2:220047587-220047840(+)$1	1	220	240	20.3311
.(................).	chr11:57585440-57585689(+)$1	1	194	214	19.6319
..((............))..	chr11:6635283-6635524(-)$1	1	121	141	21.6659
((((............))))	chr8:566463-566739(-)$1	1	2	22	22.4035
((((.............)))	chr11:64532544-64532802(-)$1	1	189	209	22.5258
(.(((...........))).	chr15:44086676-44086981(+)$1	1	6	26	21.8318
((((............))))	chr1:110564277-110564525(+)$1	1	170	190	20.6914
.(((............))).	chrX:48780161-48780465(-)$1	1	86	106	20.8817
((((.............)))	chr2:85281822-85282126(+)$1	1	57	77	22.7629
((((............))))	chr2:220047671-220047986(+)$1	1	138	158	22.4035
(((.............))).	chr19:45912070-45912316(-)$1	1	213	233	22.1852
((((..............))	chr1:45279519-45279782(+)$1	1	224	244	20.8568
.(((.............)))	chr8:30406992-30407253(+)$1	1	92	112	22.8679
((((............))))	chr12:58216080-58216341(-)$1	1	76	96	22.4035
)(((............))).	chr2:27875517-27875823(-)$1	1	257	277	21.9035
(..(.............)..	chr2:219269138-219269424(+)$1	1	102	122	22.5266
((((.............)).	chr1:109816461-109816799(+)$1	1	84	104	21.8558
((((..............))	chr7:100164293-100164562(+)$1	1	49	69	20.8568
(.((............)).)	chr9:139917409-139917703(-)$1	1	57	77	21.2727
((((................	chr5:114859435-114859730(-)$1	1	81	101	19.8738
((((............))))	chr1:173861388-173861645(+)$1	1	12	32	22.5082
((((.............)))	chrX:122735240-122735498(-)$1	1	55	75	22.7294
(..((...........))..	chr16:69731889-69732173(+)$1	1	140	160	20.4289
((((..............))	chrX:40509372-40509644(-)$1	1	64	84	21.5973
((((................	chrX:48328079-48328347(-)$1	1	60	80	19.3978
(((((...........))))	chr17:61670176-61670447(+)$1	1	164	184	20.3311
((((..............))	chr7:100164530-100164766(+)$1	1	128	148	21.6048
((((...........)))).	chr11:118267312-118267567(+)$1	1	81	101	19.9682
.(((............))).	chr20:34820054-34820317(+)$1	1	16	36	22.6320
((((.............)))	chr14:24038494-24038826(-)$1	1	159	179	21.8993
((((............))))	chr1:36388033-36388321(+)$1	1	39	59	21.5208
((((..............))	chr4:129192032-129192294(-)$1	1	88	108	21.5973
((((..............))	chr3:53265383-53265666(-)$1	1	182	202	21.5973
((((................	chr11:111608675-111608934(-)$1	1	54	74	19.8710
(((((...........))))	chr3:196083180-196083529(-)$1	1	51	71	21.3167

#PSSM
e : 0.23	d : 0.20	f : 0.12	c : 0.08	[ : 0.05	b : 0.05	# : 0.04	! : 0.04	g : 0.04	= : 0.04	h : 0.02	: : 0.02	& : 0.01	i : 0.01	
d : 0.26	e : 0.20	c : 0.15	f : 0.10	[ : 0.06	! : 0.05	= : 0.04	h : 0.02	g : 0.02	# : 0.01	b : 0.01	a : 0.01	i : 0.01	
d : 0.26	e : 0.20	c : 0.17	b : 0.09	f : 0.09	= : 0.04	h : 0.02	g : 0.02	! : 0.02	[ : 0.01	y : 0.01	i : 0.01	
d : 0.26	e : 0.20	c : 0.13	b : 0.09	f : 0.09	a : 0.05	v : 0.05	= : 0.04	y : 0.02	i : 0.01	h : 0.01	
v : 0.27	u : 0.27	w : 0.15	y : 0.08	d : 0.05	e : 0.04	c : 0.04	t : 0.02	f : 0.02	b : 0.01	= : 0.01	
v : 0.27	u : 0.27	t : 0.21	w : 0.15	y : 0.08	
v : 0.27	u : 0.27	t : 0.21	w : 0.15	y : 0.08	
v : 0.27	u : 0.27	t : 0.21	w : 0.15	y : 0.08	
v : 0.27	u : 0.27	t : 0.21	w : 0.15	y : 0.08	
v : 0.27	u : 0.27	t : 0.21	w : 0.15	y : 0.08	
v : 0.27	u : 0.27	t : 0.21	w : 0.15	y : 0.08	
v : 0.27	u : 0.27	t : 0.21	w : 0.15	y : 0.08	
v : 0.27	u : 0.27	t : 0.21	w : 0.15	y : 0.08	
v : 0.27	u : 0.27	t : 0.21	w : 0.15	y : 0.08	
v : 0.27	u : 0.27	t : 0.21	w : 0.15	y : 0.08	
v : 0.27	u : 0.27	t : 0.19	w : 0.15	y : 0.08	d : 0.02	
v : 0.21	w : 0.15	d : 0.13	e : 0.10	c : 0.10	b : 0.08	y : 0.08	f : 0.04	h : 0.02	= : 0.02	a : 0.01	
d : 0.19	c : 0.16	w : 0.15	e : 0.13	b : 0.10	y : 0.08	f : 0.05	= : 0.04	h : 0.02	] : 0.01	i : 0.01	a : 0.01	
d : 0.23	e : 0.19	c : 0.17	f : 0.08	2 : 0.06	y : 0.06	a : 0.04	= : 0.04	h : 0.02	b : 0.02	] : 0.02	i : 0.01	
d : 0.20	e : 0.19	] : 0.10	c : 0.08	2 : 0.08	f : 0.08	: : 0.05	y : 0.05	= : 0.04	h : 0.02	b : 0.02	3 : 0.01	i : 0.01	4 : 0.01	

#score	1575.9296776215012
#seq	73
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_UTR_m3_run1.txt

#BEAR
bb!!bbqqqqqqqqbb22b	chr11:129999848-130000162(+)$1	314	120	139	13.2386
!!ddddqqqqqqqqdddd3	chr6:35543413-35543812(-)$1	399	218	237	14.3086
ddddddqqqqqqqqdddd6	chr12:57928742-57929038(-)$1	296	148	167	13.0989
bb[cccqqqqqqqqccc]b	chr14:56103090-56103354(+)$1	264	74	93	13.8555
eeecccqqqqqqqqccc22	chr1:205719003-205719273(-)$1	270	188	207	14.3570
$eeeeeqqqqqqqqeeeee	chr5:891278-891505(-)$1	227	179	198	13.8790
======qqqqqqqq=====	chr2:172848000-172848331(+)$1	331	285	304	14.8030
c[ddddqqqqqqqqdddd3	chr22:22899850-22900064(-)$1	214	3	22	14.1550
ccc[bbqqqqqqqqbb]cc	chr6:144184557-144184808(+)$1	251	73	92	14.0871
:eeeeeqqqqqqqqeeeee	chr10:103919935-103920193(+)$1	258	144	163	13.0275
[eeeeeqqqqqqqqeeeee	chr22:21804682-21804941(+)$1	259	227	246	14.1438
ggggbbqqqqqqqqbb]gg	chr11:129992208-129992506(+)$1	298	79	98	14.2355
"""cccqqqqqqqqccc33	chr12:76444209-76444418(-)$1	209	102	121	15.0185
dd[cccqqqqqqqqccc]d	chr19:10227507-10227766(-)$1	259	95	114	14.1975
deeeeeqqqqqqqqeeeee	chr18:77733654-77733923(-)$1	269	149	168	13.9002
d!!cccqqqqqqqqccc22	chr12:6716411-6716627(-)$1	216	111	130	14.5978
!!ddddqqqqqqqqdddd3	chr6:13615845-13616104(+)$1	259	95	114	14.3086
ddd!!aqqqqqqqqa22dd	chr1:28527555-28527779(-)$1	224	37	56	13.0942
cc[cccqqqqqqqqccc]c	chr1:45116421-45116750(+)$1	329	140	159	14.5033
d"""bbqqqqqqqqbb]dd	chr14:102551033-102551242(-)$1	209	6	25	13.9682
ffffffqqqqqqqqfffff	chr5:133502760-133502976(-)$1	216	32	51	13.5658
ffffffqqqqqqqqfffff	chr3:184044952-184045254(+)$1	302	16	35	13.5658
[bbcccqqqqqqqqccc]b	chr5:138704349-138704629(+)$1	280	200	219	13.8425
ffffffqqqqqqqqfffff	chr19:10505895-10506116(-)$1	221	47	66	13.5658
"""cccqqqqqqqqccc33	chr12:76441394-76441598(-)$1	204	155	174	15.0185
#eeeeeqqqqqqqqeeeee	chr19:10941835-10942114(+)$1	279	145	164	14.0720
eeee[aqqqqqqqqaeeee	chr11:130003422-130003664(+)$1	242	16	35	14.0268
!!ddddqqqqqqqqdddd2	chr19:45458539-45458825(+)$1	286	85	104	14.1263
ccc[bbqqqqqqqqbb]cc	chr12:132195767-132196069(+)$1	302	224	243	14.0871
ggddddqqqqqqqqdddd2	chr20:31407660-31407926(+)$1	266	23	42	13.8473
d[ddddqqqqqqqqdddd3	chr1:2451178-2451468(-)$1	290	176	195	14.0762
======qqqqqqqq=====	chr12:56189719-56189945(-)$1	226	77	96	14.8030
ffffffqqqqqqqqfffff	chr9:139702286-139702572(+)$1	286	63	82	13.5658
iiiiiiqqqqqqqqiiiii	chr19:1010684-1010972(-)$1	288	264	283	14.3074
[bb[bbqqqqqqqqbbbb]	chr1:153591242-153591612(-)$1	370	133	152	13.1913
ffffffqqqqqqqqfffff	chr14:24686130-24686426(-)$1	296	235	254	13.5658
deeeeeqqqqqqqqeeeee	chr9:139735172-139735417(+)$1	245	79	98	13.9002
g!!cccqqqqqqqqccc22	chr17:56082698-56082947(-)$1	249	218	237	14.7031
##ddddqqqqqqqqdddd8	chr8:144408295-144408575(-)$1	280	159	178	13.4887
&eeeeeqqqqqqqqeeeee	chr7:104742424-104742708(+)$1	284	58	77	13.4579
"""cccqqqqqqqqccc33	chr19:41784895-41785154(+)$1	259	158	177	15.0185
"""cccqqqqqqqqccc]h	chr17:80441497-80441760(+)$1	263	214	233	14.5265
ccc[bbqqqqqqqqbb]cc	chr4:174292156-174292512(+)$1	356	21	40	14.0871
======qqqqqqqq=====	chr1:156104493-156104741(+)$1	248	55	74	14.8030
b[ddddqqqqqqqqdddd]	chr1:70700279-70700553(+)$1	274	251	270	13.8095
fff[bbqqqqqqqqbb]ff	chr9:139734926-139735242(+)$1	316	87	106	14.0085
======qqqqqqqq=====	chr19:10270630-10270839(-)$1	209	89	108	14.8030
[eeeeeqqqqqqqqeeeee	chr19:10260428-10260636(-)$1	208	144	163	14.1438
eeeeeaqqqqqqqqa]eee	chr19:51857311-51857593(-)$1	282	124	143	13.9495
ffffffqqqqqqqqfffff	chr5:149827164-149827399(-)$1	235	36	55	13.5658
======qqqqqqqq=====	chr12:56189745-56189961(-)$1	216	93	112	14.8030
#eeeeeqqqqqqqqeeeee	chr5:176916475-176916729(-)$1	254	46	65	14.0720
gggg[aqqqqqqqqa]ggg	chr2:232577052-232577256(+)$1	204	53	72	14.0576
ccccccqqqqqqqqccc22	chr14:102550094-102550309(-)$1	215	86	105	14.3306
d!!cccqqqqqqqqccc22	chr7:5568038-5568313(-)$1	275	208	227	14.5978
[a[cccqqqqqqqqccc]a	chr6:43738561-43738782(+)$1	221	7	26	14.6919
e[ddddqqqqqqqqdddde	chr15:72766586-72766948(+)$1	362	165	184	13.8546
h[ddddqqqqqqqqdddd2	chr5:179147430-179147657(+)$1	227	86	105	13.7560
fff[bbqqqqqqqqbb]ff	chr17:7480827-7481123(+)$1	296	122	141	14.0085
beeeeeqqqqqqqqeeeee	chr19:39138194-39138504(+)$1	310	287	306	13.7743
[cccbbqqqqqqqqbb]cc	chr9:35725590-35725825(-)$1	235	112	131	14.1692
eee[bbqqqqqqqqbb]ee	chr17:41154616-41154893(+)$1	277	32	51	14.2361
dd!!bbqqqqqqqqbb22d	chr11:118886453-118886685(-)$1	232	172	191	13.5806
d[ddddqqqqqqqqdddd3	chr9:132590250-132590558(-)$1	308	50	69	14.0762
eeeebbqqqqqqqqbb]ee	chr19:39923803-39924054(-)$1	251	105	124	14.1226
ffffffqqqqqqqqfffff	chr2:20449862-20450093(-)$1	231	209	228	13.5658
e[a[bbqqqqqqqqbb]ae	chr1:8938546-8938786(-)$1	240	126	145	14.2439
ffffffqqqqqqqqfffff	chr7:117831859-117832222(+)$1	363	219	238	13.5658
!bb[bbqqqqqqqqbb]bb	chr19:50002675-50002880(+)$1	205	151	170	13.2781
======qqqqqqqq=====	chr12:56189713-56189919(-)$1	206	51	70	14.8030
======qqqqqqqq=====	chr6:114262064-114262353(-)$1	289	173	192	14.8030
:eeeeeqqqqqqqqeeeee	chr19:5649837-5650063(+)$1	226	189	208	13.0275
d!!cccqqqqqqqqccc22	chr19:10764860-10765138(+)$1	278	28	47	14.5978
ffffffqqqqqqqqfffff	chr11:110150304-110150547(-)$1	243	85	104	13.5658

#otherMatches

#Seq PSSM
CGUGCUGAGAACAAAGAUC	chr11:129999848-130000162(+)$1	314	120	139	13.2386
AAGAGUCCCAGUGAACUCG	chr6:35543413-35543812(-)$1	399	218	237	14.3086
GCGCCUACUGCAUGAGGUC	chr12:57928742-57929038(-)$1	296	148	167	13.0989
AGGUUCAACUACAAGAAGC	chr14:56103090-56103354(+)$1	264	74	93	13.8555
GGUCAGUGCGGAGUCUGAG	chr1:205719003-205719273(-)$1	270	188	207	14.3570
AGGUGGAGGUGGAGCCGCC	chr5:891278-891505(-)$1	227	179	198	13.8790
AGGAAGCUUGCAAAUUUUC	chr2:172848000-172848331(+)$1	331	285	304	14.8030
ccccgccccACGCAGCGGC	chr22:22899850-22900064(-)$1	214	3	22	14.1550
CUUGAAGAAGAAUGUUGAG	chr6:144184557-144184808(+)$1	251	73	92	14.0871
AGAGCUCUUCAGACAGCUC	chr10:103919935-103920193(+)$1	258	144	163	13.0275
UAGAGCAGACAAGGGCUCU	chr22:21804682-21804941(+)$1	259	227	246	14.1438
guggaggaCCGAGAUUACU	chr11:129992208-129992506(+)$1	298	79	98	14.2355
GAUGAUGUAAGCGAAUUUG	chr12:76444209-76444418(-)$1	209	102	121	15.0185
UGCCAGGACCUGAACUGCC	chr19:10227507-10227766(-)$1	259	95	114	14.1975
GACAUCAUCGAGACGGUGU	chr18:77733654-77733923(-)$1	269	149	168	13.9002
GAGCGGGAGUGACACCGAG	chr12:6716411-6716627(-)$1	216	111	130	14.5978
CAGGGAUAAAACGCUCCUG	chr6:13615845-13616104(+)$1	259	95	114	14.3086
GCACAGAACCUUUCCCCUG	chr1:28527555-28527779(-)$1	224	37	56	13.0942
gcacauacucaaacaugcg	chr1:45116421-45116750(+)$1	329	140	159	14.5033
AAACCUGAAAUUGAAGAUG	chr14:102551033-102551242(-)$1	209	6	25	13.9682
GUUUUCUUAGAUUUGGGAA	chr5:133502760-133502976(-)$1	216	32	51	13.5658
GCAAGUGAGUGAAAAUUUG	chr3:184044952-184045254(+)$1	302	16	35	13.5658
AGACUUAAUUGUAAAAGCU	chr5:138704349-138704629(+)$1	280	200	219	13.8425
GGCCCUUUGCCUCCAGGGC	chr19:10505895-10506116(-)$1	221	47	66	13.5658
UUUCAAGUUAUUUGUUGUU	chr12:76441394-76441598(-)$1	204	155	174	15.0185
AGGGGGGACCAGAACCCUU	chr19:10941835-10942114(+)$1	279	145	164	14.0720
GUUGUGUCGAUGUUCCAGC	chr11:130003422-130003664(+)$1	242	16	35	14.0268
ggcgggggcggggacccgg	chr19:45458539-45458825(+)$1	286	85	104	14.1263
GGUCGGUUCCUCUCCCCAC	chr12:132195767-132196069(+)$1	302	224	243	14.0871
CGGAGGAUGGCGAGCCUUU	chr20:31407660-31407926(+)$1	266	23	42	13.8473
GAGCGGGAACCUCAUCGCC	chr1:2451178-2451468(-)$1	290	176	195	14.0762
UUUUCUAGGGCAGCAGAGA	chr12:56189719-56189945(-)$1	226	77	96	14.8030
cgcggcgccccgUAGCCGC	chr9:139702286-139702572(+)$1	286	63	82	13.5658
CUGGGCCCCGUCUCGCCUG	chr19:1010684-1010972(-)$1	288	264	283	14.3074
GGAUGUGAAUCAGGACUCG	chr1:153591242-153591612(-)$1	370	133	152	13.1913
CCAGGAUUCAGUAUUCCUG	chr14:24686130-24686426(-)$1	296	235	254	13.5658
UCUCAGGGAUGUGACUGAG	chr9:139735172-139735417(+)$1	245	79	98	13.9002
UACAGUUUUCCUUUAUUCA	chr17:56082698-56082947(-)$1	249	218	237	14.7031
AGUCCUGAGCAGGGAGGAG	chr8:144408295-144408575(-)$1	280	159	178	13.4887
UCUUCUCCUGAUAUAGAAG	chr7:104742424-104742708(+)$1	284	58	77	13.4579
UCCCUGGACUCCUGCAGCA	chr19:41784895-41785154(+)$1	259	158	177	15.0185
CCAGCCACCUGCCAGGCCC	chr17:80441497-80441760(+)$1	263	214	233	14.5265
GCCAGCAGAGACCAGCAGG	chr4:174292156-174292512(+)$1	356	21	40	14.0871
AACUAAUUCUGAUUUUGGU	chr1:156104493-156104741(+)$1	248	55	74	14.8030
UGUUGGUUUGCAUUUCAAG	chr1:70700279-70700553(+)$1	274	251	270	13.8095
CCUGUCACUGCCUGGGGAG	chr9:139734926-139735242(+)$1	316	87	106	14.0085
UUUUCCCCCAGAACGGAGA	chr19:10270630-10270839(-)$1	209	89	108	14.8030
CUUUCUCAUCAAGUAGGAG	chr19:10260428-10260636(-)$1	208	144	163	14.1438
CGGCUCAAGGAGAAGAAGC	chr19:51857311-51857593(-)$1	282	124	143	13.9495
CCAGGGGAAAGGGAUUCUG	chr5:149827164-149827399(-)$1	235	36	55	13.5658
UUUUCUAGGGCAGCAGAGA	chr12:56189745-56189961(-)$1	216	93	112	14.8030
CACCCCCGUCCUUUGGGGU	chr5:176916475-176916729(-)$1	254	46	65	14.0720
CACAGUAGGAGGGAAGUGU	chr2:232577052-232577256(+)$1	204	53	72	14.0576
UUUGGUCAAAAAAUGCUUA	chr14:102550094-102550309(-)$1	215	86	105	14.3306
GGCCGAGCGGGAAAUCGUG	chr7:5568038-5568313(-)$1	275	208	227	14.5978
GGAGGGGGUCGGGGCUCGC	chr6:43738561-43738782(+)$1	221	7	26	14.6919
GCGGGCAGCAAGCGGcccc	chr15:72766586-72766948(+)$1	362	165	184	13.8546
AAAGGCAAAUGGAAGCCUC	chr5:179147430-179147657(+)$1	227	86	105	13.7560
UUCAUCAACACCCGGAGGA	chr17:7480827-7481123(+)$1	296	122	141	14.0085
GCCCAGGAGGACGACUGGG	chr19:39138194-39138504(+)$1	310	287	306	13.7743
CUGGAGAAAAGAAGCUGCC	chr9:35725590-35725825(-)$1	235	112	131	14.1692
CAGUAUGUGGGCUAAUCCU	chr17:41154616-41154893(+)$1	277	32	51	14.2361
GAUACAAAGCUUUAUGGUU	chr11:118886453-118886685(-)$1	232	172	191	13.5806
CCUGCUAACGAGAAGGCAA	chr9:132590250-132590558(-)$1	308	50	69	14.0762
UGGUGCCCGCGCUCGCUAC	chr19:39923803-39924054(-)$1	251	105	124	14.1226
UUGGUUACCAUGGAGGCCA	chr2:20449862-20450093(-)$1	231	209	228	13.5658
GGCGACGAGACCCAGUGGC	chr1:8938546-8938786(-)$1	240	126	145	14.2439
UCUGUAAAUCUUUGUACAG	chr7:117831859-117832222(+)$1	363	219	238	13.5658
GUGCGCUUCAACGUGCUCA	chr19:50002675-50002880(+)$1	205	151	170	13.2781
UUUUCUAGGGCAGCAGAGA	chr12:56189713-56189919(-)$1	206	51	70	14.8030
AAUAUUGAAAGGAAAAUGU	chr6:114262064-114262353(-)$1	289	173	192	14.8030
GGCCUGGGCAGUGGCGGGU	chr19:5649837-5650063(+)$1	226	189	208	13.0275
CCUCCCUCCCAUUUGGGUU	chr19:10764860-10765138(+)$1	278	28	47	14.5978
UUGAAGUGGAGAAUUUUUA	chr11:110150304-110150547(-)$1	243	85	104	13.5658

#DB
((..((........))..)	chr11:129999848-130000162(+)$1	1	120	139	13.2386
..((((........)))).	chr6:35543413-35543812(-)$1	1	218	237	14.3086
((((((........)))).	chr12:57928742-57929038(-)$1	1	148	167	13.0989
((.(((........))).)	chr14:56103090-56103354(+)$1	1	74	93	13.8555
((((((........)))..	chr1:205719003-205719273(-)$1	1	188	207	14.3570
.(((((........)))))	chr5:891278-891505(-)$1	1	179	198	13.8790
((((((........)))))	chr2:172848000-172848331(+)$1	1	285	304	14.8030
(.((((........)))).	chr22:22899850-22900064(-)$1	1	3	22	14.1550
(((.((........)).))	chr6:144184557-144184808(+)$1	1	73	92	14.0871
.(((((........)))))	chr10:103919935-103920193(+)$1	1	144	163	13.0275
.(((((........)))))	chr22:21804682-21804941(+)$1	1	227	246	14.1438
((((((........)).))	chr11:129992208-129992506(+)$1	1	79	98	14.2355
...(((........)))..	chr12:76444209-76444418(-)$1	1	102	121	15.0185
((.(((........))).)	chr19:10227507-10227766(-)$1	1	95	114	14.1975
((((((........)))))	chr18:77733654-77733923(-)$1	1	149	168	13.9002
(..(((........)))..	chr12:6716411-6716627(-)$1	1	111	130	14.5978
..((((........)))).	chr6:13615845-13616104(+)$1	1	95	114	14.3086
(((..(........)..))	chr1:28527555-28527779(-)$1	1	37	56	13.0942
((.(((........))).)	chr1:45116421-45116750(+)$1	1	140	159	14.5033
(...((........)).))	chr14:102551033-102551242(-)$1	1	6	25	13.9682
((((((........)))))	chr5:133502760-133502976(-)$1	1	32	51	13.5658
((((((........)))))	chr3:184044952-184045254(+)$1	1	16	35	13.5658
.(((((........))).)	chr5:138704349-138704629(+)$1	1	200	219	13.8425
((((((........)))))	chr19:10505895-10506116(-)$1	1	47	66	13.5658
...(((........)))..	chr12:76441394-76441598(-)$1	1	155	174	15.0185
.(((((........)))))	chr19:10941835-10942114(+)$1	1	145	164	14.0720
((((.(........)))))	chr11:130003422-130003664(+)$1	1	16	35	14.0268
..((((........)))).	chr19:45458539-45458825(+)$1	1	85	104	14.1263
(((.((........)).))	chr12:132195767-132196069(+)$1	1	224	243	14.0871
((((((........)))).	chr20:31407660-31407926(+)$1	1	23	42	13.8473
(.((((........)))).	chr1:2451178-2451468(-)$1	1	176	195	14.0762
((((((........)))))	chr12:56189719-56189945(-)$1	1	77	96	14.8030
((((((........)))))	chr9:139702286-139702572(+)$1	1	63	82	13.5658
((((((........)))))	chr19:1010684-1010972(-)$1	1	264	283	14.3074
.((.((........)))).	chr1:153591242-153591612(-)$1	1	133	152	13.1913
((((((........)))))	chr14:24686130-24686426(-)$1	1	235	254	13.5658
)(((((........)))))	chr9:139735172-139735417(+)$1	1	79	98	13.9002
(..(((........)))..	chr17:56082698-56082947(-)$1	1	218	237	14.7031
..((((........)))).	chr8:144408295-144408575(-)$1	1	159	178	13.4887
.(((((........)))))	chr7:104742424-104742708(+)$1	1	58	77	13.4579
...(((........)))..	chr19:41784895-41785154(+)$1	1	158	177	15.0185
...(((........))).)	chr17:80441497-80441760(+)$1	1	214	233	14.5265
(((.((........)).))	chr4:174292156-174292512(+)$1	1	21	40	14.0871
((((((........)))))	chr1:156104493-156104741(+)$1	1	55	74	14.8030
(.((((........)))).	chr1:70700279-70700553(+)$1	1	251	270	13.8095
(((.((........)).))	chr9:139734926-139735242(+)$1	1	87	106	14.0085
((((((........)))))	chr19:10270630-10270839(-)$1	1	89	108	14.8030
.(((((........)))))	chr19:10260428-10260636(-)$1	1	144	163	14.1438
((((((........).)))	chr19:51857311-51857593(-)$1	1	124	143	13.9495
((((((........)))))	chr5:149827164-149827399(-)$1	1	36	55	13.5658
((((((........)))))	chr12:56189745-56189961(-)$1	1	93	112	14.8030
.(((((........)))))	chr5:176916475-176916729(-)$1	1	46	65	14.0720
((((.(........).)))	chr2:232577052-232577256(+)$1	1	53	72	14.0576
((((((........)))..	chr14:102550094-102550309(-)$1	1	86	105	14.3306
(..(((........)))..	chr7:5568038-5568313(-)$1	1	208	227	14.5978
.(.(((........))).)	chr6:43738561-43738782(+)$1	1	7	26	14.6919
(.((((........)))))	chr15:72766586-72766948(+)$1	1	165	184	13.8546
(.((((........)))).	chr5:179147430-179147657(+)$1	1	86	105	13.7560
(((.((........)).))	chr17:7480827-7481123(+)$1	1	122	141	14.0085
((((((........)))))	chr19:39138194-39138504(+)$1	1	287	306	13.7743
.(((((........)).))	chr9:35725590-35725825(-)$1	1	112	131	14.1692
(((.((........)).))	chr17:41154616-41154893(+)$1	1	32	51	14.2361
((..((........))..)	chr11:118886453-118886685(-)$1	1	172	191	13.5806
(.((((........)))).	chr9:132590250-132590558(-)$1	1	50	69	14.0762
((((((........)).))	chr19:39923803-39924054(-)$1	1	105	124	14.1226
((((((........)))))	chr2:20449862-20450093(-)$1	1	209	228	13.5658
(.(.((........)).))	chr1:8938546-8938786(-)$1	1	126	145	14.2439
((((((........)))))	chr7:117831859-117832222(+)$1	1	219	238	13.5658
.((.((........)).))	chr19:50002675-50002880(+)$1	1	151	170	13.2781
((((((........)))))	chr12:56189713-56189919(-)$1	1	51	70	14.8030
((((((........)))))	chr6:114262064-114262353(-)$1	1	173	192	14.8030
.(((((........)))))	chr19:5649837-5650063(+)$1	1	189	208	13.0275
(..(((........)))..	chr19:10764860-10765138(+)$1	1	28	47	14.5978
((((((........)))))	chr11:110150304-110150547(-)$1	1	85	104	13.5658

#PSSM
d : 0.16	f : 0.14	e : 0.09	= : 0.09	c : 0.08	[ : 0.08	b : 0.05	! : 0.05	g : 0.05	" : 0.05	# : 0.04	: : 0.02	$ : 0.01	i : 0.01	& : 0.01	h : 0.01	
e : 0.21	f : 0.14	! : 0.09	= : 0.09	[ : 0.09	c : 0.08	b : 0.06	" : 0.06	d : 0.05	g : 0.04	i : 0.01	# : 0.01	a : 0.01	
e : 0.21	d : 0.17	f : 0.14	= : 0.09	! : 0.08	c : 0.06	" : 0.06	[ : 0.05	b : 0.04	g : 0.02	i : 0.01	a : 0.01	
c : 0.21	e : 0.18	d : 0.16	[ : 0.12	f : 0.12	= : 0.09	! : 0.04	g : 0.02	" : 0.01	i : 0.01	
b : 0.20	c : 0.20	d : 0.16	e : 0.16	f : 0.12	= : 0.09	[ : 0.02	! : 0.01	i : 0.01	
b : 0.20	c : 0.20	d : 0.16	e : 0.14	f : 0.12	= : 0.09	a : 0.05	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
b : 0.20	c : 0.20	d : 0.16	e : 0.14	f : 0.12	= : 0.09	a : 0.05	i : 0.01	
b : 0.20	c : 0.20	d : 0.16	e : 0.16	f : 0.12	= : 0.09	] : 0.02	2 : 0.01	i : 0.01	
c : 0.20	e : 0.17	d : 0.16	] : 0.16	f : 0.12	= : 0.09	2 : 0.04	i : 0.01	b : 0.01	g : 0.01	
e : 0.20	d : 0.18	f : 0.14	2 : 0.10	= : 0.09	] : 0.08	c : 0.05	3 : 0.04	g : 0.02	b : 0.02	i : 0.01	a : 0.01	
e : 0.22	f : 0.14	2 : 0.12	3 : 0.10	= : 0.09	c : 0.06	b : 0.05	d : 0.05	g : 0.02	] : 0.02	6 : 0.01	i : 0.01	8 : 0.01	h : 0.01	a : 0.01	

#score	1039.8550389688241
#seq	74
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_transcript_m1_run2.txt

#BEAR
!dddd"""eeeee[acccmmmmccc333a]eeeee333dd	chr9:136020459-136020721(-)$1	262	92	132	13.5674
"""ggggggg!!ccc[bbmmmmbb]ccc22ggggggg333	chr5:170815508-170815765(+)$1	257	186	226	14.4588
dd"""cccccc[ccccccnnnnnccc]ccc]ccc]ccc55	chr6:111136433-111136685(-)$1	252	202	242	12.6382
iiiiii[accc!!a[bboooooobb]a22ccc22a]iiii	chr19:13261950-13262225(+)$1	275	86	126	15.5956
gggggg[ccc[dddd[bbmmmmbbdddd]ccc]ggggggg	chr11:2405682-2405952(+)$1	270	94	134	12.5946
[ccc[eeeee[a!!cccmmmmccc4444a]eeeee]ccc]	chr12:132401564-132401806(+)$1	242	144	184	12.7453
ggggg!!a[bb$$$$$ccclllccc333bb]a333ggggg	chr19:41110187-41110450(+)$1	263	49	89	14.1282
a[affffff"""eeeeeooooooeeeee333ffffff]a]	chr22:49921091-49921353(-)$1	262	115	155	12.1147
B============!!cccmmmmccc4444===========	chr13:92001569-92001785(+)$1	216	32	72	17.5442
[==========[cccddddllldddd333ccc]=======	chr19:1880492-1880738(-)$1	246	178	218	16.7842
!iiiiiiiiiccc!!dddd!!eeeee[=============	chr9:96938188-96938402(+)$1	214	29	69	12.9922
""ccc"""==========nnnnn==========333ccce	chr19:50168359-50168646(-)$1	287	106	146	17.1718
&a[ccc[ccc[dddd[ccclllcccdddd22ccc]ccc]a	chr12:56122636-56122883(-)$1	247	120	160	12.0770
!!===========[a[bbnnnnnbb]a]===========]	chr17:79980283-79980575(-)$1	292	198	238	19.4279
!!iiiiiiiii[a[ddddnnnnndddd]a]iiiiiiiiic	chr16:85645389-85645715(+)$1	326	134	174	16.8747
####ccc[cccccc"""aooooooa333ccc]ccc]ccc4	chr5:179921447-179921810(+)$1	363	138	178	15.7661
ggggggg[iiiiiiiiibbmmmmbb22iiiiiiiii]ggg	chr11:64073283-64073528(+)$1	245	127	167	14.7389
ddd!!ggggggg"""cccnnnnnccc22ggggggg333dd	chr16:402097-402392(-)$1	295	106	146	15.5755
::a[ggggggg!!bb[bbnnnnnbb]bb4444ggggggg]	chr6:31704053-31704312(-)$1	259	80	120	13.3710
ffff!!============lll============22fffff	chr1:156022901-156023171(-)$1	270	162	202	14.9019
%%%%ggggggg[cccaccclllccc]a]ccc]gggggggf	chr15:85341253-85341526(+)$1	273	151	191	13.1607
eeeee[eeeee"""a[bboooooobba333eeeee22eee	chr2:70974409-70974758(-)$1	349	222	262	13.0684
::bb[iiiiiiiii[aarrrrrrrrra]a]iiiiiiiii]	chr11:287776-288011(+)$1	235	193	233	12.5881
!!iiiiiiiii[bb[cccmmmmccc333bb]iiiiiiiii	chr22:22007576-22007825(+)$1	249	36	76	16.1966
!bb####eeeee####bboooooobb4444eeeeebb22d	chr8:25315634-25315935(-)$1	301	197	237	12.8135
fffffiiiiiiiii!!bb[ammmma]bb4444iiiiiiii	chrX:47005013-47005268(+)$1	255	57	97	13.5123
!iiiiiiiiiccc!!dddd!!eeeee[=============	chr9:96938143-96938358(+)$1	215	74	114	12.9922
=====!!ggggggg[ddddmmmmdddd]ggggggg=====	chr1:227163913-227164156(+)$1	243	198	238	14.7199
g[ccc"""eeeee[ddddllldddd]eeeeeccc]ggggg	chr4:1873415-1873697(+)$1	282	185	225	12.4639
eee[iiiiiiiiixxxxxxxxxxxxxxxiiiiiiiii22e	chr17:57918267-57918530(+)$1	263	150	190	12.2607
"bb[bb============oooooo============]bb3	chr14:19888511-19888791(-)$1	280	51	91	16.2250
=====####dddd!!a[bbmmmmbb]a22dddd4444===	chr17:80808404-80808643(+)$1	239	125	165	13.3301
!!eeeee!!eeeee!!ccclllccc333eeeee]eeeeee	chr1:44053394-44053690(+)$1	296	206	246	12.9832
!!a[ccc!!eeeee[bboooooobb]eeeeeccc]a22bb	chr20:60758050-60758363(+)$1	313	44	84	12.8609
a[ggggggg[bb!!cccooooooccc4444bb]ggggggg	chr17:46657526-46657764(-)$1	238	105	145	15.5085
da[ccc[ccc[ddddbboooooobb]dddd]cccccc]a]	chr16:89007620-89007861(-)$1	241	116	156	12.9538
dd"""bb[a[ccc!!cccnnnnncccccc]abb4444ddd	chr22:20048880-20049125(+)$1	245	171	211	13.0982
=[ccc[===========oooooo===========ccc]==	chr13:92003540-92003744(+)$1	204	46	86	17.5249
ggg####eeeee!!bb[annnnna]bb22eeeeegggggg	chr19:4066194-4066441(-)$1	247	35	75	13.3698
=========[eeeee[bboooooobb22eeeee22=====	chr7:151216139-151216400(-)$1	261	61	101	14.8693
dddd===========!!annnnna22===========]dd	chr1:178995005-178995307(+)$1	302	235	275	16.6266
eee[ggggggg[ccc[ccclllcccccc22ggggggg]ee	chr7:101459383-101459650(+)$1	267	54	94	14.4489
c[ffffff[a[gggggggnnnnnggggggga]ffffff]c	chrX:151126963-151127217(-)$1	254	108	148	12.2206
======[bbccc[bb[ammmma]bb]ccc]bb22======	chr12:132402735-132403001(+)$1	266	72	112	12.6722
iiiiiiiccc[a[ccc[bbmmmmbb]ccc]a]ccc22iii	chr8:61429480-61429759(+)$1	279	84	124	13.5194
[ggggggg####ffffffnnnnnffffffggggggg]bbc	chr1:3639331-3639609(+)$1	278	37	77	12.3199
dddd[a!!gggggggcccmmmmccc]gggggggaddddff	chr15:76603588-76603860(-)$1	272	124	164	12.0525
==========####ddddllldddd4444===========	chr14:105935043-105935299(+)$1	256	179	219	17.0312
ccc[dddd[ccc!!ddddnnnnndddd22cccdddd]ccc	chr16:89450734-89451056(-)$1	322	14	54	12.2023
ddddiiiiiiiii[bba[annnnna]a]bb]iiiiiiiii	chr19:2270509-2270753(+)$1	244	111	151	14.8162
[ggggggg[dddd[a[cccmmmmcccadddd]ggggggg]	chr2:3628054-3628308(+)$1	254	141	181	13.5029
:::=========="""bbmmmmbb333==========eee	chr12:58218070-58218405(-)$1	335	228	268	13.8540
ff=========================]============	chr22:46983818-46984068(+)$1	250	185	225	15.8596
e[a[eeeee[ccc[ddddnnnnndddd]ccc]eeeee]a]	chr3:47458583-47458839(-)$1	256	139	179	12.9815
fffffcccccc[a[ddddnnnnndddd]a22ccc]ccc]f	chr17:20770237-20770484(-)$1	247	145	185	12.7836
$$$$a[==========[annnnna]==========]a555	chr10:111986979-111987232(+)$1	253	38	78	14.4168
cc!!ccc[bb[ccccccooooooccc333ccc]bb]ccc2	chr16:1495790-1496031(-)$1	241	65	105	14.2324

#otherMatches

#Seq PSSM
GAGGGUGAUGACUGGGACCAGUGUCUAUCGGGucagcuuc	chr9:136020459-136020721(-)$1	262	92	132	13.5674
UUAAGAGGCUGGUAGCACUAGGGUUCUGGAGGUCuuuguu	chr5:170815508-170815765(+)$1	257	186	226	14.4588
GCGGAgcggcgggcggcgggcggcgcgcgcgcgcgcgcgA	chr6:111136433-111136685(-)$1	252	202	242	12.6382
GUCUCAGAGAUAGCGCCUGGGCUGGGGAAAUCAUUGUGGG	chr19:13261950-13262225(+)$1	275	86	126	15.5956
CUCGGGAGGUGGGGCAUCUCUGGGGCCCGGCCACUUGGGA	chr11:2405682-2405952(+)$1	270	94	134	12.5946
gcucgaggcugugggaugggggucggguggggcuuggagg	chr12:132401564-132401806(+)$1	242	144	184	12.7453
CAUAGAAUGCGAAGGAGACAGAGUUGGGCGGGGAGUUAUG	chr19:41110187-41110450(+)$1	263	49	89	14.1282
cugugcauguuugugcgucugugugcauguuugugcgucu	chr22:49921091-49921353(-)$1	262	115	155	12.1147
GGGGAGGGGUGGUGAAGAAUAGUCUGUGGGCUGCUUUUUU	chr13:92001569-92001785(+)$1	216	32	72	17.5442
AGCAUGGGCUCCCCUGGGAAGGUCCUGAAAGGUGGGCCUG	chr19:1880492-1880738(-)$1	246	178	218	16.7842
CCCUGGAUGUUCUCUUCACUGUGGGAUGAGGUAGUAGGUU	chr9:96938188-96938402(+)$1	214	29	69	12.9922
UUGGGAGAUCUUCUGUAGGGGGACUGUGGAAGGGGGUCUA	chr19:50168359-50168646(-)$1	287	106	146	17.1718
ACGCGCAGCCAGCCUUGGGAAGCCCAGGUGAGGCCGCGGG	chr12:56122636-56122883(-)$1	247	120	160	12.0770
AGCCUGGGGUCUUUUGUUAAGGGGAGAUGAGGCCCCAGGA	chr17:79980283-79980575(-)$1	292	198	238	19.4279
UGCCAAGCCUGGCGCGGGCAUGUCCCGGGGCAGGUUUGGG	chr16:85645389-85645715(+)$1	326	134	174	16.8747
AAGCAGUGGCUCUCGGAGGGGGAACAAAGAGCAGCGACUA	chr5:179921447-179921810(+)$1	363	138	178	15.7661
GCCUGGGGCAGGAUCUGGCUCUGGCUGCGGGUCCUGACUC	chr11:64073283-64073528(+)$1	245	127	167	14.7389
GCUGACGCGCGUGGGACCGAGGGGGUGGGCGCGCGGGGAG	chr16:402097-402392(-)$1	295	106	146	15.5755
UUUGGGUGCAAGUAGGUCUGAUUGAGCUUGUGUUGUGCUG	chr6:31704053-31704312(-)$1	259	80	120	13.3710
CUGUGCCUCAGAGAACGCCCAGUGUUCUCUGAGCGACGGG	chr1:156022901-156023171(-)$1	270	162	202	14.9019
GAUGUCCUGAGGCAGGGGAGCAUCCACAUUGGCUCAGGGU	chr15:85341253-85341526(+)$1	273	151	191	13.1607
AGAGCAUGUGGCAUGAUGGGAGAGCACUUACCAUACAGCU	chr2:70974409-70974758(-)$1	349	222	262	13.0684
agagugcagggccugccuuaaauguuguggggguucuguu	chr11:287776-288011(+)$1	235	193	233	12.5881
CCUGUUGCACUACUAUAGGCCGCUGGGAAGCAGUGCAAUG	chr22:22007576-22007825(+)$1	249	36	76	16.1966
AACGGCAGCCCCAAGAACGGAAAGGUAAcgggggcgugag	chr8:25315634-25315935(-)$1	301	197	237	12.8135
AAAGGCGCGUGCGCGACUGGGACAUGGGAUGGGUGCAUGC	chrX:47005013-47005268(+)$1	255	57	97	13.5123
CCCUGGAUGUUCUCUUCACUGUGGGAUGAGGUAGUAGGUU	chr9:96938143-96938358(+)$1	215	74	114	12.9922
GUUGCCUggcuucggggcugcggggcugcggggcugcgAU	chr1:227163913-227164156(+)$1	243	198	238	14.7199
cgggcgggcgggcgcggccauguugggcccggccgggccc	chr4:1873415-1873697(+)$1	282	185	225	12.4639
CUUGGGAGGAAAAUAAACAAUUUUACUUUUUUCCUUUAGG	chr17:57918267-57918530(+)$1	263	150	190	12.2607
GUCGGCCCGGCGGGGGUGACCCCGCGCCCUCGCCGGUGCA	chr14:19888511-19888791(-)$1	280	51	91	16.2250
gcuguuguugguugugugugcugACCCCGGACCCCCUACA	chr17:80808404-80808643(+)$1	239	125	165	13.3301
CUGGAGGUCGUGGCCAGGCACAGCCACAGCCACCCCUCCC	chr1:44053394-44053690(+)$1	296	206	246	12.9832
GACGUGCUUUCCCGAGCCGGUGAGUGCGGGAGCGGGGAGC	chr20:60758050-60758363(+)$1	313	44	84	12.8609
GGCGCGAAGGCACCCAGAAAGGCCUGAAUCUGACUUCGUG	chr17:46657526-46657764(-)$1	238	105	145	15.5085
GCGAGCGCGCGGCGUUGGAGCCACAggcgcggcggcugga	chr16:89007620-89007861(-)$1	241	116	156	12.9538
GGCACCUACGGGCUGAGCAACGCGCUGCUGGAGACUCCCU	chr22:20048880-20049125(+)$1	245	171	211	13.0982
UCGGUUGCAAUGCUGUGUUUCUGUAUGGUAUUGCACUUGU	chr13:92003540-92003744(+)$1	204	46	86	17.5249
UUCGGGGCUCCCAGGCGCGCGGGGAGCGGGGGAGGGGAAG	chr19:4066194-4066441(-)$1	247	35	75	13.3698
gcccuccgcgggccgggcgggcagguggcggccgggcgga	chr7:151216139-151216400(-)$1	261	61	101	14.8693
gcgcgggggcgggggagggcgcgcgacccccgcccccggc	chr1:178995005-178995307(+)$1	302	235	275	16.6266
ccgggggccccgggcuggcccagccgccggggggcccgcg	chr7:101459383-101459650(+)$1	267	54	94	14.4489
uuccguuuaguagaugauugugcauuguuucaaaauggug	chrX:151126963-151127217(-)$1	254	108	148	12.2206
AGCCCUUGGCCUGAGGUGGGGAGCUGGGGACUUGGGGGUU	chr12:132402735-132403001(+)$1	266	72	112	12.6722
UCGGGCGCUGUCUCCCUCGGCUCUGCGGGUGUCAGUUCGU	chr8:61429480-61429759(+)$1	279	84	124	13.5194
cagaggugggcaccuggcauggggccgggcaccucucugc	chr1:3639331-3639609(+)$1	278	37	77	12.3199
GGAGACCAUGUUCCGAGCGGCGGCUCCGGGGCAGCUCCGG	chr15:76603588-76603860(-)$1	272	124	164	12.0525
CCCGCAGUGCCCCUUGGGCUCCUCACCCUGCACUGUGGGA	chr14:105935043-105935299(+)$1	256	179	219	17.0312
CAGUGCAGAGGCUCCUUCCUGCAGAAGCUGCCCUGCUCUG	chr16:89450734-89451056(-)$1	322	14	54	12.2023
GUUGUGGGGGAGCCCGCGGGGUCUCGGUCGAGCUUUCCCG	chr19:2270509-2270753(+)$1	244	111	151	14.8162
CCCGGUGCAGUGGUGUACAGUUCUGUCCCACAGCAUUGGA	chr2:3628054-3628308(+)$1	254	141	181	13.5029
AACUGGUGAAGGUACCCAGUACUGCAAACCUUCAUCACAG	chr12:58218070-58218405(-)$1	335	228	268	13.8540
CUCUGUCCCAGAGUCUCUCUCUAAACCGGACAUCUAGAGC	chr22:46983818-46984068(+)$1	250	185	225	15.8596
UAGGUGUGGGACGCCAUUGAAGGGGUGCUGUGCUGCAGCA	chr3:47458583-47458839(-)$1	256	139	179	12.9815
GGAACCAGCCCUUGGGUGGGGAGCGCUGGCUGGGUCUGAG	chr17:20770237-20770484(-)$1	247	145	185	12.7836
ggaagggcgugcgcgugugggaggggcgugcgcguguggg	chr10:111986979-111987232(+)$1	253	38	78	14.4168
UGAUGUUGAGAGCUGAGAAAAACCUCCAAGGCCCUGAGCC	chr16:1495790-1496031(-)$1	241	65	105	14.2324

#DB
.((((...(((((.((((....)))...).)))))...))	chr9:136020459-136020721(-)$1	1	92	132	13.5674
...(((((((..(((.((....)).)))..)))))))...	chr5:170815508-170815765(+)$1	1	186	226	14.4588
((...((((((.((((((.....))).))).))).)))..	chr6:111136433-111136685(-)$1	1	202	242	12.6382
((((((.((((..(.((......)).)..)))..).))))	chr19:13261950-13262225(+)$1	1	86	126	15.5956
((((((.(((.((((.((....)))))).))).)))))))	chr11:2405682-2405952(+)$1	1	94	134	12.5946
.(((.(((((.(..(((....)))....).))))).))).	chr12:132401564-132401806(+)$1	1	144	184	12.7453
(((((..(.((.....(((...)))...)).)...)))))	chr19:41110187-41110450(+)$1	1	49	89	14.1282
(.(((((((...(((((......)))))...)))))).).	chr22:49921091-49921353(-)$1	1	115	155	12.1147
(((((((((((((..(((....)))....)))))))))))	chr13:92001569-92001785(+)$1	1	32	72	17.5442
.((((((((((.(((((((...))))...))).)))))))	chr19:1880492-1880738(-)$1	1	178	218	16.7842
.((((((((((((..((((..(((((.(((((((((((((	chr9:96938188-96938402(+)$1	1	29	69	12.9922
..(((...((((((((((.....))))))))))...))))	chr19:50168359-50168646(-)$1	1	106	146	17.1718
.(.(((.(((.((((.(((...)))))))..))).))).)	chr12:56122636-56122883(-)$1	1	120	160	12.0770
..(((((((((((.(.((.....)).).))))))))))).	chr17:79980283-79980575(-)$1	1	198	238	19.4279
..(((((((((.(.((((.....)))).).))))))))))	chr16:85645389-85645715(+)$1	1	134	174	16.8747
....(((.((((((...(......)...))).))).))).	chr5:179921447-179921810(+)$1	1	138	178	15.7661
(((((((.(((((((((((....))..))))))))).)))	chr11:64073283-64073528(+)$1	1	127	167	14.7389
(((..(((((((...(((.....)))..)))))))...))	chr16:402097-402392(-)$1	1	106	146	15.5755
..(.(((((((..((.((.....)).))....))))))).	chr6:31704053-31704312(-)$1	1	80	120	13.3710
((((..((((((((((((...))))))))))))..)))))	chr1:156022901-156023171(-)$1	1	162	202	14.9019
....(((((((.(((((((...))).).))).))))))))	chr15:85341253-85341526(+)$1	1	151	191	13.1607
(((((.(((((...(.((......)))...)))))..)))	chr2:70974409-70974758(-)$1	1	222	262	13.0684
..((.(((((((((.((.........).).))))))))).	chr11:287776-288011(+)$1	1	193	233	12.5881
..(((((((((.((.(((....)))...)).)))))))))	chr22:22007576-22007825(+)$1	1	36	76	16.1966
.((....(((((....((......))....)))))))..)	chr8:25315634-25315935(-)$1	1	197	237	12.8135
)))))(((((((((..((.(....).))....))))))))	chrX:47005013-47005268(+)$1	1	57	97	13.5123
.((((((((((((..((((..(((((.(((((((((((((	chr9:96938143-96938358(+)$1	1	74	114	12.9922
(((((..(((((((.((((....)))).))))))))))))	chr1:227163913-227164156(+)$1	1	198	238	14.7199
(.(((...(((((.((((...)))).)))))))).)))))	chr4:1873415-1873697(+)$1	1	185	225	12.4639
(((.(((((((((...............)))))))))..)	chr17:57918267-57918530(+)$1	1	150	190	12.2607
.((.((((((((((((((......)))))))))))).)).	chr14:19888511-19888791(-)$1	1	51	91	16.2250
(((((....((((..(.((....)).)..))))....)))	chr17:80808404-80808643(+)$1	1	125	165	13.3301
..(((((..(((((..(((...)))...))))).))))))	chr1:44053394-44053690(+)$1	1	206	246	12.9832
..(.(((..(((((.((......)).)))))))).)..))	chr20:60758050-60758363(+)$1	1	44	84	12.8609
(.(((((((.((..(((......)))....)).)))))))	chr17:46657526-46657764(-)$1	1	105	145	15.5085
((.(((.(((.((((((......)).)))).)))))).).	chr16:89007620-89007861(-)$1	1	116	156	12.9538
((...((.(.(((..(((.....)))))).)))....)))	chr22:20048880-20049125(+)$1	1	171	211	13.0982
(.(((.(((((((((((......)))))))))))))).))	chr13:92003540-92003744(+)$1	1	46	86	17.5249
(((....(((((..((.(.....).))..)))))))))))	chr19:4066194-4066441(-)$1	1	35	75	13.3698
(((((((((.(((((.((......))..)))))..)))))	chr7:151216139-151216400(-)$1	1	61	101	14.8693
(((((((((((((((..(.....)..))))))))))).))	chr1:178995005-178995307(+)$1	1	235	275	16.6266
(((.(((((((.(((.(((...))))))..))))))).))	chr7:101459383-101459650(+)$1	1	54	94	14.4489
(.((((((.(.(((((((.....)))))))).)))))).)	chrX:151126963-151127217(-)$1	1	108	148	12.2206
((((((.(((((.((.(....).)).))).))..))))))	chr12:132402735-132403001(+)$1	1	72	112	12.6722
((((((((((.(.(((.((....)).))).).)))..)))	chr8:61429480-61429759(+)$1	1	84	124	13.5194
.(((((((....((((((.....))))))))))))).)))	chr1:3639331-3639609(+)$1	1	37	77	12.3199
((((.(..((((((((((....))).))))))))))))((	chr15:76603588-76603860(-)$1	1	124	164	12.0525
((((((((((....((((...))))....)))))))))))	chr14:105935043-105935299(+)$1	1	179	219	17.0312
(((.((((.(((..((((.....))))..))))))).)))	chr16:89450734-89451056(-)$1	1	14	54	12.2023
))))(((((((((.(((.(.....).).)).)))))))))	chr19:2270509-2270753(+)$1	1	111	151	14.8162
.(((((((.((((.(.(((....)))))))).))))))).	chr2:3628054-3628308(+)$1	1	141	181	13.5029
...((((((((((...((....))...))))))))))(((	chr12:58218070-58218405(-)$1	1	228	268	13.8540
))))))))))))))))))))))))))).))))))))))))	chr22:46983818-46984068(+)$1	1	185	225	15.8596
(.(.(((((.(((.((((.....)))).))).))))).).	chr3:47458583-47458839(-)$1	1	139	179	12.9815
(((((((((((.(.((((.....)))).)..))).))).)	chr17:20770237-20770484(-)$1	1	145	185	12.7836
....(.((((((((((.(.....).)))))))))).)...	chr10:111986979-111987232(+)$1	1	38	78	14.4168
((..(((.((.((((((......)))...))).)).))).	chr16:1495790-1496031(-)$1	1	65	105	14.2324

#PSSM
! : 0.15	d : 0.12	= : 0.10	g : 0.08	[ : 0.07	f : 0.07	e : 0.07	" : 0.05	: : 0.05	c : 0.05	i : 0.03	a : 0.03	B : 0.01	& : 0.01	# : 0.01	% : 0.01	$ : 0.01	
d : 0.12	= : 0.12	g : 0.10	[ : 0.10	! : 0.08	i : 0.07	f : 0.07	c : 0.05	: : 0.05	e : 0.05	" : 0.03	a : 0.03	b : 0.03	# : 0.01	% : 0.01	$ : 0.01	
= : 0.15	g : 0.12	i : 0.10	d : 0.08	c : 0.08	a : 0.07	f : 0.07	e : 0.07	" : 0.05	b : 0.05	[ : 0.03	# : 0.01	% : 0.01	: : 0.01	$ : 0.01	! : 0.01	
= : 0.17	g : 0.12	[ : 0.12	i : 0.10	c : 0.10	f : 0.08	d : 0.07	# : 0.05	" : 0.03	! : 0.03	e : 0.03	% : 0.01	b : 0.01	$ : 0.01	
= : 0.19	g : 0.17	i : 0.14	c : 0.14	f : 0.07	[ : 0.05	e : 0.05	d : 0.03	" : 0.03	! : 0.03	# : 0.03	b : 0.01	a : 0.01	
g : 0.17	i : 0.17	= : 0.15	c : 0.12	" : 0.05	e : 0.05	! : 0.05	[ : 0.05	# : 0.05	f : 0.03	b : 0.03	a : 0.01	d : 0.01	
= : 0.21	g : 0.15	i : 0.15	c : 0.08	[ : 0.08	e : 0.07	" : 0.05	! : 0.05	# : 0.05	f : 0.03	b : 0.01	d : 0.01	
= : 0.21	g : 0.15	i : 0.14	c : 0.10	e : 0.08	[ : 0.07	" : 0.05	! : 0.05	a : 0.03	f : 0.03	# : 0.01	b : 0.01	d : 0.01	
= : 0.22	i : 0.15	g : 0.14	c : 0.14	e : 0.12	[ : 0.07	# : 0.03	! : 0.03	b : 0.03	f : 0.01	a : 0.01	
= : 0.21	c : 0.17	i : 0.15	e : 0.14	g : 0.12	[ : 0.07	b : 0.03	d : 0.03	" : 0.01	a : 0.01	# : 0.01	
= : 0.19	c : 0.17	e : 0.14	[ : 0.12	i : 0.12	g : 0.10	b : 0.03	d : 0.03	# : 0.03	! : 0.01	" : 0.01	
= : 0.17	c : 0.14	e : 0.12	[ : 0.12	d : 0.08	i : 0.08	g : 0.07	! : 0.05	a : 0.03	" : 0.03	# : 0.03	$ : 0.01	b : 0.01	
c : 0.19	= : 0.17	e : 0.10	! : 0.10	d : 0.08	i : 0.08	g : 0.05	a : 0.03	" : 0.03	# : 0.03	[ : 0.03	$ : 0.01	b : 0.01	f : 0.01	
! : 0.15	[ : 0.14	c : 0.14	= : 0.12	e : 0.07	d : 0.05	i : 0.05	" : 0.05	b : 0.05	g : 0.05	# : 0.03	a : 0.01	$ : 0.01	x : 0.01	f : 0.01	
c : 0.15	d : 0.15	! : 0.12	= : 0.12	[ : 0.08	a : 0.07	b : 0.07	" : 0.05	e : 0.03	g : 0.03	$ : 0.01	i : 0.01	# : 0.01	x : 0.01	f : 0.01	
c : 0.19	[ : 0.17	d : 0.17	= : 0.10	b : 0.08	a : 0.05	! : 0.05	" : 0.03	$ : 0.01	e : 0.01	i : 0.01	# : 0.01	x : 0.01	g : 0.01	f : 0.01	
c : 0.28	b : 0.21	d : 0.17	= : 0.08	[ : 0.07	a : 0.05	e : 0.01	" : 0.01	i : 0.01	x : 0.01	! : 0.01	g : 0.01	f : 0.01	
c : 0.22	b : 0.21	d : 0.17	o : 0.12	= : 0.07	a : 0.07	m : 0.03	r : 0.01	x : 0.01	g : 0.01	f : 0.01	[ : 0.01	
n : 0.26	o : 0.21	m : 0.15	c : 0.10	d : 0.07	b : 0.05	l : 0.05	r : 0.01	[ : 0.01	x : 0.01	a : 0.01	= : 0.01	
n : 0.28	m : 0.24	o : 0.21	l : 0.15	! : 0.03	r : 0.01	a : 0.01	x : 0.01	= : 0.01	
n : 0.28	m : 0.26	o : 0.21	l : 0.15	! : 0.03	r : 0.01	x : 0.01	= : 0.01	
n : 0.28	m : 0.22	o : 0.21	l : 0.10	e : 0.03	= : 0.03	d : 0.03	c : 0.01	r : 0.01	x : 0.01	a : 0.01	
n : 0.28	o : 0.21	c : 0.17	m : 0.10	b : 0.05	d : 0.05	e : 0.03	= : 0.03	r : 0.01	x : 0.01	] : 0.01	
c : 0.28	b : 0.21	d : 0.14	o : 0.08	= : 0.07	e : 0.05	a : 0.05	r : 0.01	m : 0.01	x : 0.01	g : 0.01	f : 0.01	n : 0.01	
c : 0.26	b : 0.21	d : 0.15	= : 0.08	] : 0.05	e : 0.05	a : 0.05	4 : 0.01	r : 0.01	x : 0.01	2 : 0.01	g : 0.01	f : 0.01	3 : 0.01	
] : 0.22	c : 0.14	d : 0.14	3 : 0.10	= : 0.10	b : 0.07	4 : 0.05	e : 0.05	2 : 0.03	r : 0.01	x : 0.01	g : 0.01	f : 0.01	
3 : 0.14	a : 0.14	d : 0.14	= : 0.12	c : 0.08	4 : 0.08	e : 0.05	2 : 0.05	b : 0.05	[ : 0.03	g : 0.03	] : 0.01	x : 0.01	f : 0.01	
= : 0.15	] : 0.15	3 : 0.14	c : 0.10	2 : 0.10	4 : 0.08	d : 0.07	e : 0.05	b : 0.03	g : 0.03	i : 0.01	x : 0.01	f : 0.01	
= : 0.19	c : 0.12	2 : 0.10	4 : 0.10	a : 0.08	3 : 0.07	g : 0.07	e : 0.07	b : 0.05	d : 0.05	i : 0.03	] : 0.01	f : 0.01	
= : 0.22	c : 0.15	] : 0.12	g : 0.08	e : 0.08	2 : 0.07	4 : 0.07	b : 0.05	d : 0.05	3 : 0.03	i : 0.03	
= : 0.22	e : 0.15	c : 0.14	g : 0.10	] : 0.08	i : 0.07	a : 0.05	2 : 0.03	4 : 0.03	d : 0.03	b : 0.03	3 : 0.01	
= : 0.22	c : 0.19	e : 0.12	g : 0.10	i : 0.10	] : 0.10	b : 0.05	4 : 0.03	a : 0.01	f : 0.01	d : 0.01	
= : 0.22	g : 0.15	e : 0.14	c : 0.14	i : 0.12	] : 0.07	2 : 0.03	f : 0.03	d : 0.03	3 : 0.01	b : 0.01	
= : 0.21	g : 0.17	c : 0.14	i : 0.12	e : 0.10	2 : 0.07	3 : 0.03	f : 0.03	4 : 0.03	] : 0.01	a : 0.01	d : 0.01	b : 0.01	
= : 0.21	g : 0.19	i : 0.12	e : 0.10	] : 0.08	c : 0.07	3 : 0.03	f : 0.03	2 : 0.03	4 : 0.03	d : 0.03	a : 0.01	b : 0.01	
= : 0.22	g : 0.19	i : 0.12	c : 0.08	] : 0.08	3 : 0.05	f : 0.05	2 : 0.03	4 : 0.03	e : 0.03	d : 0.03	b : 0.01	a : 0.01	
= : 0.21	g : 0.17	c : 0.15	i : 0.12	] : 0.07	f : 0.05	2 : 0.05	3 : 0.03	4 : 0.03	e : 0.03	b : 0.01	d : 0.01	a : 0.01	
= : 0.19	g : 0.15	c : 0.14	i : 0.12	] : 0.10	3 : 0.05	e : 0.05	2 : 0.05	f : 0.03	b : 0.03	d : 0.03	5 : 0.01	
= : 0.21	g : 0.15	i : 0.12	c : 0.08	d : 0.07	e : 0.07	a : 0.05	] : 0.05	b : 0.05	5 : 0.03	f : 0.03	2 : 0.03	3 : 0.01	
= : 0.19	] : 0.14	g : 0.10	e : 0.10	d : 0.08	i : 0.08	c : 0.07	f : 0.07	3 : 0.03	5 : 0.03	a : 0.01	4 : 0.01	b : 0.01	2 : 0.01	

#score	807.1115220722154
#seq	57
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_transcript_m2_run1.txt

#BEAR
gg####ffffffooooooffffff4444ggg	chr19:51857311-51857593(-)$1	282	161	192	14.0659
ffffff"""cccooooooccc]ffffff444	chr16:58231441-58231703(-)$1	262	56	87	14.7557
eee!!eeeee[aooooooa]eeeee22eeee	chr1:24977807-24978022(+)$1	215	141	172	13.4092
dddffffff[bboooooobb333ffffffii	chr17:73034917-73035259(-)$1	342	25	56	13.4430
#a[==========nnnnn==========]a4	chr20:34636396-34636613(-)$1	217	125	156	12.2927
ccc"""ffffffooooooffffff]ccc]ff	chr10:32306158-32306385(-)$1	227	131	162	13.6811
ddd!!ffffffaooooooa]ffffff4444d	chr5:71492188-71492446(+)$1	258	163	194	13.3749
eee"""bb[cccooooooccc]bb22eeeee	chr2:183866624-183866869(-)$1	245	201	232	14.9979
======"""ccclllccc333==========	chr1:2237466-2237709(+)$1	243	130	161	12.2622
fffff####cccooooooccc333ffffff2	chr17:57759634-57759889(+)$1	255	84	115	15.3391
[eeeee"""cccooooooccceeeeea]bb:	chr19:10227396-10227707(-)$1	311	257	288	13.6154
========[cccooooooccc==========	chr9:35731969-35732280(-)$1	311	252	283	17.4177
[dddd[ccccccooooooccc]ccc]dddd]	chr22:22892362-22892679(-)$1	317	120	151	14.3864
bb####ccc[bboooooobb]ccc4444bbb	chr19:10273901-10274135(-)$1	234	120	151	13.5449
gggggbb[ddddoooooodddd]bb22gggg	chr17:7794156-7794432(+)$1	276	58	89	13.3491
cceeeee!!cccooooooccc4444eeeee:	chr5:71491845-71492111(+)$1	266	208	239	14.6541
!!eeeee[ddddoooooodddd333eeeee5	chr19:45411717-45412020(+)$1	303	250	281	13.7592
============mmmm=============bb	chrX:70518217-70518427(+)$1	210	86	117	11.5837
a[bb####ddddoooooodddd4444bb333	chr7:77326030-77326290(+)$1	260	192	223	14.4562
dd[cccbb[cccooooooccc]bb333ccc]	chr11:63967617-63967866(+)$1	249	107	138	15.0401
========!!bboooooobb22=========	chr19:10941835-10942114(+)$1	279	191	222	16.2958
ddd!!ccc[cccooooooccc]ccc22dddd	chr5:96368462-96368726(+)$1	264	185	216	14.7698
eeee[eeeeebboooooobb]eeeeeeeeee	chr7:98994161-98994416(-)$1	255	211	242	13.1010
dd"""bb[bb[aooooooa]bb]bb]dddd]	chr14:100705133-100705391(+)$1	258	146	177	13.0637
iiiiiii::cccooooooccc==========	chr3:47734629-47734832(-)$1	203	51	82	14.7404
ee[eeeee[cccooooooccc22eeeeeeee	chr12:120934170-120934416(+)$1	246	169	200	14.4201
eee[bb!!bbbboooooobb]bb22bb]eee	chr12:76442121-76442344(-)$1	223	184	215	12.6063
[eeeee!!ddddoooooodddd22eeeee]a	chr7:75959198-75959538(-)$1	340	180	211	13.8933
[bba!!ffffffooooooffffff22a]bb2	chr22:41226742-41227013(-)$1	271	39	70	12.5816
gggg[==========lll==========22g	chr20:34636147-34636405(-)$1	258	199	230	12.1996
============nnnnn==============	chr16:23690413-23690655(+)$1	242	3	34	12.7585
f"""bb####bboooooobbbb333ffffff	chr15:101814696-101814957(-)$1	261	136	167	13.9720
iggggggg[cccooooooccc]ggggggg::	chr4:71895526-71895786(+)$1	260	76	107	13.9275
iiii$$$$$cccooooooccc333iiiiiii	chr15:34727490-34727753(-)$1	263	77	108	16.3837
ee"""dddd[bboooooobbdddd]eeeeed	chr20:40122401-40122671(-)$1	270	110	141	13.3140
ccc[ccc!!cccooooooccc22ccc]ccc]	chr10:129903554-129903785(-)$1	231	132	163	15.7548
ccc####eeeeeooooooeeeee22ccc333	chr17:4575687-4575945(-)$1	258	30	61	14.1513
geeeee$$$$$aooooooa4444eeeee]gg	chr17:7145466-7145736(-)$1	270	234	265	13.6668
bb"""a[ccc[aooooooa]ccca333bb]a	chr12:76442927-76443130(-)$1	203	111	142	14.6199
ccc[a"""ddddoooooodddd333a]ccc2	chr19:50002689-50002933(+)$1	244	58	89	15.5585
gggg####ddddooooooddddggggggg55	chr19:55649255-55649543(-)$1	288	68	99	13.5037
==============lll==============	chr17:73315174-73315431(-)$1	257	31	62	13.0938
d[===========mmmm===========ddd	chr5:133502776-133503037(-)$1	261	3	34	11.5225
hhhhh[bb[cccoooooocccbb]hhhhhhh	chr15:41762354-41762645(+)$1	291	37	68	12.2947
bgggggggddddoooooodddd]ggggggg]	chr19:41115427-41115668(+)$1	241	171	202	14.1536
!ccc[gggggggooooooggggggg]ccc22	chr17:37006347-37006557(-)$1	210	84	115	14.5924
=============mmmm==============	chr2:153533064-153533394(-)$1	330	196	227	12.3630
eee[ccc!!cccoooooocccccceeeee22	chr1:93307255-93307461(+)$1	206	65	96	15.2723
accc!!ddddbboooooobb]dddd]ccc22	chr18:51750584-51750859(-)$1	275	10	41	13.3457
ddd[bb!!ddddoooooodddd22bbdddd3	chr19:19605033-19605293(+)$1	260	47	78	13.0660
cc[eeeee[cccooooooccc22eeeeeccc	chr12:120934216-120934485(+)$1	269	123	154	14.5128
h[a[ccc!!cccooooooccc333cccahhh	chr9:133761338-133761586(+)$1	248	29	60	15.5364
e[dddd[eeeeeooooooeeeee]dddd]ee	chr5:96369189-96369426(+)$1	237	12	43	11.8930
dd:iiiiiiiiiooooooiiiiiiiiieeee	chr1:222833214-222833448(+)$1	234	148	179	14.0320
g[ffffffddddoooooodddd4444fffff	chrX:70766869-70767077(+)$1	208	83	114	13.2462
ddd[ffffffbboooooobb]ffffff]ddd	chr12:76443454-76443665(-)$1	211	87	118	12.6862
ccc"""bb!!bboooooobb22bb]ccc22=	chr17:27413374-27413685(-)$1	311	140	171	14.0515

#otherMatches

#Seq PSSM
CCGUCAGCUGUGGGCCUGCACAGUGCCAGGU	chr19:51857311-51857593(-)$1	282	161	192	14.0659
gcccgccaugcccggcccggccgcgGGCAGC	chr16:58231441-58231703(-)$1	262	56	87	14.7557
AGAGAGAGAAAGCGCAGUCAUUCUCGAUCUC	chr1:24977807-24978022(+)$1	215	141	172	13.4092
GUGGCAGGAACCUGCCUUGGAUAUUCUGCUU	chr17:73034917-73035259(-)$1	342	25	56	13.4430
AUGAAAUAUCUAGUCUUUCUAGAUAUUUGGA	chr20:34636396-34636613(-)$1	217	125	156	12.2927
CUUCCUAAGUUGGAAAAGCGACUUCGAGCUA	chr10:32306158-32306385(-)$1	227	131	162	13.6811
GUGCCGAGGAGCAGUAUGGAUUCCUCACCAC	chr5:71492188-71492446(+)$1	258	163	194	13.3749
UGUUAGGCAUAUGAGAGAAUGGGCAUAUAAC	chr2:183866624-183866869(-)$1	245	201	232	14.9979
CGCCUGAAGCGGGAGCUGGAGCAGGCGCGGC	chr1:2237466-2237709(+)$1	243	130	161	12.2622
UGGCUAAAACAAACCGCCUUGCAGAGUUAGA	chr17:57759634-57759889(+)$1	255	84	115	15.3391
UCAGUGCACGGGUUCUGUCCCCACUGCUGCC	chr19:10227396-10227707(-)$1	311	257	288	13.6154
ggggccuggccccggggcgggcgggccCUGC	chr9:35731969-35732280(-)$1	311	252	283	17.4177
UGUUCCUCAAGGAAGGUGCCUGUGAUGAAUU	chr22:22892362-22892679(-)$1	317	120	151	14.3864
CAACCCAAAGAUCUGUAAGUGUUUAAAAUGC	chr19:10273901-10274135(-)$1	234	120	151	13.5449
GGGCUGGAGGAGCACCUACUUCACCAAAGCC	chr17:7794156-7794432(+)$1	276	58	89	13.3491
GGGGAGGAACACGUAUGUGUGAGCGCCUCCA	chr5:71491845-71492111(+)$1	266	208	239	14.6541
GAGGUGCAGGCCAUGCUCGGCCAGAGCACCG	chr19:45411717-45412020(+)$1	303	250	281	13.7592
UUUUUUGUUUUUCAGAGAGAGCAGGAGAUUC	chrX:70518217-70518427(+)$1	210	86	117	11.5837
CCGCCGCCGCCGCUGCCUCGGCUAACGCCAA	chr7:77326030-77326290(+)$1	260	192	223	14.4562
CCUGCUACACCAAACUCCUGGAGUUCCAGCU	chr11:63967617-63967866(+)$1	249	107	138	15.0401
CUGGGGGGGACUCUACCAAGGUCUUCUUGGG	chr19:10941835-10942114(+)$1	279	191	222	16.2958
AUACUUGUUUCCUUGUAUGGAUGCAUAUAUA	chr5:96368462-96368726(+)$1	264	185	216	14.7698
CUCAUGGCCAGGAGCCCCCCAUGGCCUGGGG	chr7:98994161-98994416(-)$1	255	211	242	13.1010
ccggagggcgggaggaggcgcggccagggcg	chr14:100705133-100705391(+)$1	258	146	177	13.0637
AGAAAGAUAGUGAAAAUACACCUGUUAAAGG	chr3:47734629-47734832(-)$1	203	51	82	14.7404
CGGCUCAUAUCAAGAAGGUGAGGAUGGGCGC	chr12:120934170-120934416(+)$1	246	169	200	14.4201
ACACAACUCUUAUUUACUUACAGCCUUAUGU	chr12:76442121-76442344(-)$1	223	184	215	12.6063
GAGGCUGUGUGCCAGGAUGUGCUGAGCCUGC	chr7:75959198-75959538(-)$1	340	180	211	13.8933
GCUCUUUUUUCUAGGCACAGAAAAUUGCAGA	chr22:41226742-41227013(-)$1	271	39	70	12.5816
UUUUAUAAUAUCUAGUCUCUAGAUAUUAAAG	chr20:34636147-34636405(-)$1	258	199	230	12.1996
GGGGCCGCUUUUUGGGCAAGGGCGGCUUUGC	chr16:23690413-23690655(+)$1	242	3	34	12.7585
CAAAGGAAAUGCAAAGAAGCCCCAGGUGACU	chr15:101814696-101814957(-)$1	261	136	167	13.9720
UUUAAAUUAUUAUCUUCUUAACAGUUUAGUC	chr4:71895526-71895786(+)$1	260	76	107	13.9275
ACAGGAAUAAUCGGUGGAGAUGGAUUGUGAA	chr15:34727490-34727753(-)$1	263	77	108	16.3837
AGACUAUGUAGAAGUUGAUCGCAUCUUGGAG	chr20:40122401-40122671(-)$1	270	110	141	13.3140
GGAGAUGAGGAUAAAGGCAUCAACGUGUUCA	chr10:129903554-129903785(-)$1	231	132	163	15.7548
GUGCCCGAGGGGCUUCCCCCCCUGCCACCCC	chr17:4575687-4575945(-)$1	258	30	61	14.1513
GCCUUGGAUCGGGACAGGCAGCGCAGGGAUC	chr17:7145466-7145736(-)$1	270	234	265	13.6668
AGAAGGAGAUGAGGAAAAUGAUCCAGACUAU	chr12:76442927-76443130(-)$1	203	111	142	14.6199
UGGCCCUACCUGCCUCCACAGGGACGUCCAG	chr19:50002689-50002933(+)$1	244	58	89	15.5585
GAGUCCAUGAGGUUAACCCCUUACUUCCCAC	chr19:55649255-55649543(-)$1	288	68	99	13.5037
uuuaauuuguuuuguuuuaaaauaaGUUAAA	chr17:73315174-73315431(-)$1	257	31	62	13.0938
auggauaugggggcugacuCUUAUGUUUUGA	chr5:133502776-133503037(-)$1	261	3	34	11.5225
UUCAAGGAUGAAUUCAUUUUCUUGUUGAGAA	chr15:41762354-41762645(+)$1	291	37	68	12.2947
GGGCGGGGGGCUUUGCCUGGUCACCUUGUCA	chr19:41115427-41115668(+)$1	241	171	202	14.1536
AUGCAGGUUCUGCCAUUACAGGACCAGUAGC	chr17:37006347-37006557(-)$1	210	84	115	14.5924
CUGCUGUUGUUgcagcagcagcagcggcagc	chr2:153533064-153533394(-)$1	330	196	227	12.3630
AGGUGGAACCGUCCCAAAAUGUCCCUUGCUC	chr1:93307255-93307461(+)$1	206	65	96	15.2723
CGGCGACUCCGCCAUAGAGCAGGGGGGCCAG	chr18:51750584-51750859(-)$1	275	10	41	13.3457
CUGGUGUCCUGCUCUCUUGCAGCCCACAGGU	chr19:19605033-19605293(+)$1	260	47	78	13.0660
CGGCUCAUAUCAAGAAGGUGAGGAUGGGCGC	chr12:120934216-120934485(+)$1	269	123	154	14.5128
UAGUGCCCCAGACUGAGCUCUCCAGGCCAGG	chr9:133761338-133761586(+)$1	248	29	60	15.5364
UGCUAGGAGAGAGAAAAUUUUUUGCUAGGAG	chr5:96369189-96369426(+)$1	237	12	43	11.8930
UUGUAAAGGGCAACAAUCUGUUUUUUGAUGU	chr1:222833214-222833448(+)$1	234	148	179	14.0320
UUACAGGGACCUCAACCUAGGUGCAAUCCUG	chrX:70766869-70767077(+)$1	208	83	114	13.2462
UUUUCCUUUUCAGUAUGAUGAAGAAGGUGAA	chr12:76443454-76443665(-)$1	211	87	118	12.6862
CCUAAAGUUGGCAUUCAAGCGCAUCGGGGAC	chr17:27413374-27413685(-)$1	311	140	171	14.0515

#DB
((....((((((......))))))....)))	chr19:51857311-51857593(-)$1	1	161	192	14.0659
((((((...(((......))).))))))...	chr16:58231441-58231703(-)$1	1	56	87	14.7557
(((..(((((.(......).)))))..))))	chr1:24977807-24978022(+)$1	1	141	172	13.4092
)))((((((.((......))...))))))((	chr17:73034917-73035259(-)$1	1	25	56	13.4430
.(.((((((((((.....)))))))))).).	chr20:34636396-34636613(-)$1	1	125	156	12.2927
(((...((((((......)))))).))).))	chr10:32306158-32306385(-)$1	1	131	162	13.6811
(((..(((((((......).))))))....)	chr5:71492188-71492446(+)$1	1	163	194	13.3749
(((...((.(((......))).))..)))))	chr2:183866624-183866869(-)$1	1	201	232	14.9979
((((((...(((...)))...))))))))))	chr1:2237466-2237709(+)$1	1	130	161	12.2622
(((((....(((......)))...)))))).	chr17:57759634-57759889(+)$1	1	84	115	15.3391
.(((((...(((......))))))))).)).	chr19:10227396-10227707(-)$1	1	257	288	13.6154
((((((((.(((......)))))))))))))	chr9:35731969-35732280(-)$1	1	252	283	17.4177
.((((.((((((......))).))).)))).	chr22:22892362-22892679(-)$1	1	120	151	14.3864
((....(((.((......)).)))....)))	chr19:10273901-10274135(-)$1	1	120	151	13.5449
(((((((.((((......)))).))..))))	chr17:7794156-7794432(+)$1	1	58	89	13.3491
))(((((..(((......)))....))))).	chr5:71491845-71492111(+)$1	1	208	239	14.6541
..(((((.((((......))))...))))).	chr19:45411717-45412020(+)$1	1	250	281	13.7592
((((((((((((....)))))))))))))))	chrX:70518217-70518427(+)$1	1	86	117	11.5837
(.((....((((......))))....))...	chr7:77326030-77326290(+)$1	1	192	223	14.4562
((.(((((.(((......))).))...))).	chr11:63967617-63967866(+)$1	1	107	138	15.0401
((((((((..((......))..)))))))))	chr19:10941835-10942114(+)$1	1	191	222	16.2958
(((..(((.(((......))).)))..))))	chr5:96368462-96368726(+)$1	1	185	216	14.7698
((((.(((((((......)).))))))))))	chr7:98994161-98994416(-)$1	1	211	242	13.1010
((...((.((.(......).)).)).)))).	chr14:100705133-100705391(+)$1	1	146	177	13.0637
)))))))..(((......)))((((((((((	chr3:47734629-47734832(-)$1	1	51	82	14.7404
((.(((((.(((......)))..))))))))	chr12:120934170-120934416(+)$1	1	169	200	14.4201
(((.((..((((......)).))..)).)))	chr12:76442121-76442344(-)$1	1	184	215	12.6063
.(((((..((((......))))..))))).)	chr7:75959198-75959538(-)$1	1	180	211	13.8933
.(((..((((((......))))))..).)).	chr22:41226742-41227013(-)$1	1	39	70	12.5816
((((.((((((((((...))))))))))..)	chr20:34636147-34636405(-)$1	1	199	230	12.1996
((((((((((((.....))))))))))))))	chr16:23690413-23690655(+)$1	1	3	34	12.7585
(...((....((......))))...))))))	chr15:101814696-101814957(-)$1	1	136	167	13.9720
)(((((((.(((......))).)))))))..	chr4:71895526-71895786(+)$1	1	76	107	13.9275
((((.....(((......)))...)))))))	chr15:34727490-34727753(-)$1	1	77	108	16.3837
((...((((.((......)))))).)))))(	chr20:40122401-40122671(-)$1	1	110	141	13.3140
(((.(((..(((......)))..))).))).	chr10:129903554-129903785(-)$1	1	132	163	15.7548
(((....(((((......)))))..)))...	chr17:4575687-4575945(-)$1	1	30	61	14.1513
((((((.....(......)....))))).))	chr17:7145466-7145736(-)$1	1	234	265	13.6668
((...(.(((.(......).))))...)).)	chr12:76442927-76443130(-)$1	1	111	142	14.6199
(((.(...((((......))))...).))).	chr19:50002689-50002933(+)$1	1	58	89	15.5585
((((....((((......)))))))))))..	chr19:55649255-55649543(-)$1	1	68	99	13.5037
((((((((((((((...))))))))))))))	chr17:73315174-73315431(-)$1	1	31	62	13.0938
(.(((((((((((....))))))))))))))	chr5:133502776-133503037(-)$1	1	3	34	11.5225
(((((.((.(((......))))).)))))))	chr15:41762354-41762645(+)$1	1	37	68	12.2947
((((((((((((......)))).))))))).	chr19:41115427-41115668(+)$1	1	171	202	14.1536
.(((.(((((((......))))))).)))..	chr17:37006347-37006557(-)$1	1	84	115	14.5924
(((((((((((((....))))))))))))))	chr2:153533064-153533394(-)$1	1	196	227	12.3630
(((.(((..(((......)))))))))))..	chr1:93307255-93307461(+)$1	1	65	96	15.2723
((((..((((((......)).)))).)))..	chr18:51750584-51750859(-)$1	1	10	41	13.3457
(((.((..((((......))))..)))))).	chr19:19605033-19605293(+)$1	1	47	78	13.0660
((.(((((.(((......)))..))))))))	chr12:120934216-120934485(+)$1	1	123	154	14.5128
(.(.(((..(((......)))...)))))))	chr9:133761338-133761586(+)$1	1	29	60	15.5364
(.((((.(((((......))))).)))).))	chr5:96369189-96369426(+)$1	1	12	43	11.8930
)).(((((((((......)))))))))((((	chr1:222833214-222833448(+)$1	1	148	179	14.0320
(.((((((((((......))))....)))))	chrX:70766869-70767077(+)$1	1	83	114	13.2462
(((.((((((((......)).)))))).)))	chr12:76443454-76443665(-)$1	1	87	118	12.6862
(((...((..((......))..)).)))..)	chr17:27413374-27413685(-)$1	1	140	171	14.0515

#PSSM
d : 0.15	e : 0.14	c : 0.12	= : 0.12	g : 0.10	[ : 0.07	f : 0.05	b : 0.05	i : 0.05	! : 0.03	a : 0.03	h : 0.03	# : 0.01	
e : 0.17	d : 0.15	c : 0.15	= : 0.12	g : 0.10	[ : 0.08	b : 0.05	f : 0.03	i : 0.03	a : 0.01	! : 0.01	" : 0.01	h : 0.01	
e : 0.17	= : 0.14	d : 0.12	c : 0.12	g : 0.08	[ : 0.07	" : 0.07	f : 0.05	# : 0.03	b : 0.03	i : 0.03	h : 0.01	a : 0.01	: : 0.01	
= : 0.15	e : 0.14	" : 0.12	[ : 0.12	g : 0.08	f : 0.07	# : 0.05	! : 0.05	c : 0.05	i : 0.05	d : 0.03	b : 0.01	a : 0.01	h : 0.01	
= : 0.15	e : 0.12	" : 0.10	# : 0.08	f : 0.08	! : 0.08	c : 0.07	g : 0.05	[ : 0.05	b : 0.05	d : 0.03	i : 0.03	$ : 0.01	a : 0.01	h : 0.01	
= : 0.17	e : 0.15	# : 0.10	f : 0.08	b : 0.08	c : 0.08	" : 0.07	g : 0.05	[ : 0.03	i : 0.03	! : 0.03	d : 0.03	$ : 0.01	a : 0.01	
= : 0.15	f : 0.12	e : 0.10	b : 0.10	c : 0.10	# : 0.08	" : 0.07	! : 0.05	g : 0.05	i : 0.03	$ : 0.03	d : 0.03	[ : 0.03	
= : 0.15	f : 0.12	! : 0.12	e : 0.10	" : 0.07	b : 0.07	# : 0.07	c : 0.07	[ : 0.05	g : 0.05	$ : 0.03	d : 0.03	: : 0.01	i : 0.01	
d : 0.19	[ : 0.14	= : 0.12	f : 0.10	! : 0.10	e : 0.07	" : 0.05	c : 0.05	# : 0.03	b : 0.03	$ : 0.03	: : 0.01	g : 0.01	i : 0.01	
c : 0.35	d : 0.17	= : 0.12	f : 0.08	e : 0.07	[ : 0.05	! : 0.03	b : 0.03	# : 0.01	$ : 0.01	g : 0.01	i : 0.01	
c : 0.33	b : 0.17	d : 0.15	= : 0.12	f : 0.07	[ : 0.05	e : 0.03	$ : 0.01	g : 0.01	i : 0.01	
c : 0.33	b : 0.17	d : 0.15	= : 0.12	a : 0.08	f : 0.05	e : 0.03	g : 0.01	i : 0.01	
o : 0.85	= : 0.08	l : 0.01	m : 0.01	n : 0.01	
o : 0.85	m : 0.05	n : 0.03	= : 0.03	l : 0.01	
o : 0.85	m : 0.05	n : 0.03	l : 0.03	= : 0.01	
o : 0.85	m : 0.05	n : 0.03	l : 0.03	c : 0.01	
o : 0.85	n : 0.03	l : 0.03	m : 0.03	c : 0.01	= : 0.01	
o : 0.85	= : 0.08	n : 0.01	c : 0.01	l : 0.01	
c : 0.31	b : 0.17	d : 0.15	= : 0.12	a : 0.08	f : 0.05	e : 0.03	3 : 0.01	g : 0.01	i : 0.01	
c : 0.31	b : 0.17	d : 0.15	= : 0.12	] : 0.07	f : 0.05	e : 0.03	3 : 0.01	4 : 0.01	g : 0.01	i : 0.01	
c : 0.33	d : 0.17	= : 0.12	] : 0.08	f : 0.07	e : 0.05	3 : 0.03	2 : 0.03	b : 0.03	4 : 0.01	g : 0.01	i : 0.01	
d : 0.19	= : 0.17	] : 0.10	f : 0.08	e : 0.08	2 : 0.08	3 : 0.07	b : 0.07	c : 0.05	4 : 0.03	g : 0.01	i : 0.01	
= : 0.19	3 : 0.12	f : 0.10	e : 0.08	b : 0.08	c : 0.08	2 : 0.08	4 : 0.07	] : 0.05	g : 0.05	d : 0.03	i : 0.01	
= : 0.19	f : 0.12	e : 0.10	3 : 0.10	b : 0.08	c : 0.08	2 : 0.07	g : 0.07	4 : 0.05	d : 0.03	] : 0.03	a : 0.01	i : 0.01	
= : 0.19	e : 0.14	4 : 0.08	f : 0.08	3 : 0.08	2 : 0.07	c : 0.07	g : 0.07	] : 0.05	b : 0.05	i : 0.03	d : 0.03	h : 0.01	
= : 0.19	e : 0.17	f : 0.10	2 : 0.08	c : 0.08	4 : 0.07	] : 0.07	g : 0.05	3 : 0.03	b : 0.03	i : 0.03	a : 0.01	h : 0.01	d : 0.01	
= : 0.19	e : 0.17	f : 0.10	c : 0.10	d : 0.07	4 : 0.05	2 : 0.05	g : 0.05	a : 0.03	b : 0.03	3 : 0.03	i : 0.03	] : 0.03	h : 0.01	
e : 0.21	= : 0.19	c : 0.14	f : 0.08	d : 0.08	] : 0.07	g : 0.07	4 : 0.05	b : 0.03	i : 0.01	h : 0.01	a : 0.01	
e : 0.19	= : 0.14	d : 0.10	c : 0.10	g : 0.08	f : 0.07	] : 0.07	b : 0.07	4 : 0.03	3 : 0.03	2 : 0.03	h : 0.03	i : 0.01	
e : 0.17	= : 0.12	d : 0.10	2 : 0.08	g : 0.07	f : 0.07	b : 0.07	c : 0.07	4 : 0.03	i : 0.03	3 : 0.03	] : 0.03	h : 0.03	a : 0.01	: : 0.01	5 : 0.01	
= : 0.14	e : 0.12	2 : 0.10	d : 0.08	] : 0.08	g : 0.07	f : 0.05	: : 0.05	3 : 0.05	4 : 0.03	i : 0.03	b : 0.03	5 : 0.03	a : 0.03	h : 0.03	c : 0.01	

#score	790.3758012690636
#seq	57
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_transcript_m3_run1.txt

#BEAR
ccddddmmmmdddd	chr19:1408295-1408563(+)$1	268	67	81	9.8483
!!ddddmmmmdddd	chr17:79878090-79878339(-)$1	249	225	239	10.3321
ddddoooooodddd	chr16:88565935-88566220(+)$1	285	131	145	8.4850
ddddoooooodddd	chr16:47671050-47671394(+)$1	344	156	170	8.4850
b[ddddmmmmdddd	chr4:1241491-1241746(-)$1	255	161	175	9.9953
ccddddmmmmdddd	chr16:85669107-85669328(+)$1	221	56	70	9.8483
ddddoooooodddd	chr5:104728347-104728673(-)$1	326	190	204	8.4850
e!!ddddllldddd	chr19:5052300-5052553(+)$1	253	56	70	8.3337
ddddoooooodddd	chr16:88850941-88851197(-)$1	256	90	104	8.4850
ddddoooooodddd	chr1:113177363-113177588(+)$1	225	70	84	8.4850
ddddoooooodddd	chr1:109642856-109643060(+)$1	204	136	150	8.4850
!!ddddllldddd]	chr16:85659263-85659490(+)$1	227	202	216	8.2068
ddddoooooodddd	chr16:88712100-88712387(-)$1	287	129	143	8.4850
eeddddmmmmdddd	chr16:67862303-67862563(-)$1	260	141	155	9.7550
ddddoooooodddd	chr13:92000156-92000445(+)$1	289	123	137	8.4850
!!ddddmmmmdddd	chr12:51404636-51404917(-)$1	281	235	249	10.3321
HHddddmmmmdddd	chr16:70450995-70451255(-)$1	260	95	109	8.6305
ddddoooooodddd	chr14:105933370-105933621(+)$1	251	235	249	8.4850
::ddddmmmmdddd	chr19:1878329-1878581(-)$1	252	42	56	8.3980
ddddoooooodddd	chr11:47738627-47738887(-)$1	260	245	259	8.4850
d[ddddmmmmdddd	chr16:85673072-85673332(+)$1	260	223	237	10.2041
b[ddddllldddd3	chr16:590303-590543(+)$1	240	221	235	7.8250
"""ddddllldddd	chr6:16266184-16266399(+)$1	215	166	180	8.1929
!!ddddmmmmdddd	chr19:34874514-34874827(+)$1	313	178	192	10.3321
c[ddddllldddd]	chr22:49969493-49969782(-)$1	289	160	174	8.0328
!!ddddoooooodd	chr2:97535043-97535283(-)$1	240	74	88	8.0622
ffddddmmmmdddd	chr2:97534278-97534579(-)$1	301	164	178	9.4596
!!ddddmmmmdddd	chr4:78078360-78078621(+)$1	261	128	142	10.3321
c!!ddddllldddd	chr1:19670830-19671074(-)$1	244	219	233	8.3872
i:ddddmmmmdddd	chr6:47544799-47545107(+)$1	308	82	96	9.0894
ddddoooooodddd	chr5:126113637-126113895(+)$1	258	135	149	8.4850
EEddddmmmmdddd	chr16:85645579-85645836(+)$1	257	153	167	8.3424
b[ddddmmmmdddd	chr20:62331321-62331611(-)$1	290	173	187	9.9953
ddddddmmmmdddd	chr16:85657950-85658214(+)$1	264	167	181	9.9121
c[ddddmmmmdddd	chr2:97543336-97543599(-)$1	263	121	135	10.1581
ddddoooooodddd	chr16:85672345-85672598(+)$1	253	50	64	8.4850
b[ddddmmmmdddd	chr17:46702817-46703053(-)$1	236	34	48	9.9953
!!ddddmmmmdddd	chr12:123872676-123872929(+)$1	253	77	91	10.3321
e:ddddmmmmdddd	chr11:824975-825274(+)$1	299	65	79	9.0968
!!ddddmmmmdddd	chr19:41889442-41889750(+)$1	308	271	285	10.3321
dddddddllldddd	chr8:107741881-107742104(+)$1	223	196	210	8.6476
eeddddmmmmdddd	chr12:6619499-6619717(+)$1	218	159	173	9.7550
##ddddmmmmdddd	chr2:236432599-236432852(+)$1	253	208	222	10.0723
g!!ddddllldddd	chr17:8062526-8062774(-)$1	248	57	71	8.3278
d[ddddmmmmdddd	chr7:914016-914315(+)$1	299	117	131	10.2041
""ddddmmmmdddd	chr16:88524251-88524473(+)$1	222	164	178	10.1581
eeeddddllldddd	chr9:126604591-126604851(-)$1	260	231	245	7.9817
eeddddmmmmdddd	chr3:6663027-6663302(+)$1	275	192	206	9.7550
!!ddddmmmmdddd	chr10:76002761-76003023(+)$1	262	225	239	10.3321
ccddddmmmmdddd	chr4:1224999-1225262(-)$1	263	115	129	9.8483
d[ddddoooooodd	chr1:167926844-167927073(+)$1	229	116	130	7.9343
::ddddmmmmdddd	chr8:101963389-101963653(-)$1	264	229	243	8.3980
eeddddmmmmdddd	chr12:6619566-6619781(+)$1	215	92	106	9.7550
eeddddmmmmdddd	chr16:87879830-87880070(-)$1	240	187	201	9.7550
BBddddmmmmdddd	chr8:144885120-144885394(-)$1	274	221	235	8.4996
::ddddmmmmdddd	chr6:26123583-26123833(-)$1	250	9	23	8.3980
b[ddddmmmmdddd	chr1:109642760-109642962(+)$1	202	143	157	9.9953

#otherMatches

#Seq PSSM
CCGGCUUCCUGGCC	chr19:1408295-1408563(+)$1	268	67	81	9.8483
AAAAUGGAAAUAUU	chr17:79878090-79878339(-)$1	249	225	239	10.3321
CAGAGGGAGAUCUG	chr16:88565935-88566220(+)$1	285	131	145	8.4850
uugggacucaccaa	chr16:47671050-47671394(+)$1	344	156	170	8.4850
GUGUUCCGUUGAGC	chr4:1241491-1241746(-)$1	255	161	175	9.9953
AGCUUGGAGUCGAG	chr16:85669107-85669328(+)$1	221	56	70	9.8483
uggccggaucgcca	chr5:104728347-104728673(-)$1	326	190	204	8.4850
AGACACugggggug	chr19:5052300-5052553(+)$1	253	56	70	8.3337
GCUGGAAGGGCGGC	chr16:88850941-88851197(-)$1	256	90	104	8.4850
ucccacuuuaggga	chr1:113177363-113177588(+)$1	225	70	84	8.4850
GAUCUUAUUUGAUC	chr1:109642856-109643060(+)$1	204	136	150	8.4850
UGGCUCAGUGAGCG	chr16:85659263-85659490(+)$1	227	202	216	8.2068
cuuuacagacaaag	chr16:88712100-88712387(-)$1	287	129	143	8.4850
GCCGCAAGACUGUG	chr16:67862303-67862563(-)$1	260	141	155	9.7550
gggcggagcggccc	chr13:92000156-92000445(+)$1	289	123	137	8.4850
AAGGUUACCUAAUU	chr12:51404636-51404917(-)$1	281	235	249	10.3321
AGGGGUUUGUGCCU	chr16:70450995-70451255(-)$1	260	95	109	8.6305
UAGGACCAAGCCUA	chr14:105933370-105933621(+)$1	251	235	249	8.4850
GAGGGCGUCUGCCU	chr19:1878329-1878581(-)$1	252	42	56	8.3980
GAAGAAUUAACUUC	chr11:47738627-47738887(-)$1	260	245	259	8.4850
UGUGACAGCUGUCG	chr16:85673072-85673332(+)$1	260	223	237	10.2041
CAGGUCUGAGACCC	chr16:590303-590543(+)$1	240	221	235	7.8250
gcuguaacacuugc	chr6:16266184-16266399(+)$1	215	166	180	8.1929
AGAGACCUGGGUCU	chr19:34874514-34874827(+)$1	313	178	192	10.3321
GUGGCCGGAGGCUU	chr22:49969493-49969782(-)$1	289	160	174	8.0328
cgcccAUUCCGCUG	chr2:97535043-97535283(-)$1	240	74	88	8.0622
CGCCAGAGGGCUGG	chr2:97534278-97534579(-)$1	301	164	178	9.4596
GGGGCUGUGAGGCC	chr4:78078360-78078621(+)$1	261	128	142	10.3321
UGAGguaauguacc	chr1:19670830-19671074(-)$1	244	219	233	8.3872
UAGAAAUAUUUUUC	chr6:47544799-47545107(+)$1	308	82	96	9.0894
GGGCCGUGAUGCCC	chr5:126113637-126113895(+)$1	258	135	149	8.4850
GGGGGUUACAGCCC	chr16:85645579-85645836(+)$1	257	153	167	8.3424
CUCGGGAGACCCCG	chr20:62331321-62331611(-)$1	290	173	187	9.9953
GCCGCCACAGGGUG	chr16:85657950-85658214(+)$1	264	167	181	9.9121
ACGCCUUGAGGGGC	chr2:97543336-97543599(-)$1	263	121	135	10.1581
gugacccccaucAU	chr16:85672345-85672598(+)$1	253	50	64	8.4850
UGCGGCGGUGGCCG	chr17:46702817-46703053(-)$1	236	34	48	9.9953
CAUCUGUAACCAGG	chr12:123872676-123872929(+)$1	253	77	91	10.3321
CCGCGCACCUGUGC	chr11:824975-825274(+)$1	299	65	79	9.0968
UGUGCACGUAUGCG	chr19:41889442-41889750(+)$1	308	271	285	10.3321
aacacuGACUCAGU	chr8:107741881-107742104(+)$1	223	196	210	8.6476
CUUAGCUUGUGUUA	chr12:6619499-6619717(+)$1	218	159	173	9.7550
AUUGUCUCCUGGCA	chr2:236432599-236432852(+)$1	253	208	222	10.0723
UAACCUGCCACGGG	chr17:8062526-8062774(-)$1	248	57	71	8.3278
UGUUUUCAGAAAAA	chr7:914016-914315(+)$1	299	117	131	10.2041
UAAGAGCCCUCUCU	chr16:88524251-88524473(+)$1	222	164	178	10.1581
CUUGCAGCCACUGC	chr9:126604591-126604851(-)$1	260	231	245	7.9817
ugcccacaaauggg	chr3:6663027-6663302(+)$1	275	192	206	9.7550
auggagcuuucucu	chr10:76002761-76003023(+)$1	262	225	239	10.3321
GAGGCUGCUGGGCC	chr4:1224999-1225262(-)$1	263	115	129	9.8483
gcuguaccauuuua	chr1:167926844-167927073(+)$1	229	116	130	7.9343
UCCACUGCGGGGUG	chr8:101963389-101963653(-)$1	264	229	243	8.3980
CUUAGCUUGUGUUA	chr12:6619566-6619781(+)$1	215	92	106	9.7550
UGUGGGGGACUCCA	chr16:87879830-87880070(-)$1	240	187	201	9.7550
CCAGGCAGACGCCU	chr8:144885120-144885394(-)$1	274	221	235	8.4996
UCCCGGAGAGCUGG	chr6:26123583-26123833(-)$1	250	9	23	8.3980
GGACGCGUGAGUGU	chr1:109642760-109642962(+)$1	202	143	157	9.9953

#DB
((((((....))))	chr19:1408295-1408563(+)$1	1	67	81	9.8483
..((((....))))	chr17:79878090-79878339(-)$1	1	225	239	10.3321
((((......))))	chr16:88565935-88566220(+)$1	1	131	145	8.4850
((((......))))	chr16:47671050-47671394(+)$1	1	156	170	8.4850
(.((((....))))	chr4:1241491-1241746(-)$1	1	161	175	9.9953
((((((....))))	chr16:85669107-85669328(+)$1	1	56	70	9.8483
((((......))))	chr5:104728347-104728673(-)$1	1	190	204	8.4850
(..((((...))))	chr19:5052300-5052553(+)$1	1	56	70	8.3337
((((......))))	chr16:88850941-88851197(-)$1	1	90	104	8.4850
((((......))))	chr1:113177363-113177588(+)$1	1	70	84	8.4850
((((......))))	chr1:109642856-109643060(+)$1	1	136	150	8.4850
..((((...)))).	chr16:85659263-85659490(+)$1	1	202	216	8.2068
((((......))))	chr16:88712100-88712387(-)$1	1	129	143	8.4850
((((((....))))	chr16:67862303-67862563(-)$1	1	141	155	9.7550
((((......))))	chr13:92000156-92000445(+)$1	1	123	137	8.4850
..((((....))))	chr12:51404636-51404917(-)$1	1	235	249	10.3321
((((((....))))	chr16:70450995-70451255(-)$1	1	95	109	8.6305
((((......))))	chr14:105933370-105933621(+)$1	1	235	249	8.4850
..((((....))))	chr19:1878329-1878581(-)$1	1	42	56	8.3980
((((......))))	chr11:47738627-47738887(-)$1	1	245	259	8.4850
(.((((....))))	chr16:85673072-85673332(+)$1	1	223	237	10.2041
(.((((...)))).	chr16:590303-590543(+)$1	1	221	235	7.8250
...((((...))))	chr6:16266184-16266399(+)$1	1	166	180	8.1929
..((((....))))	chr19:34874514-34874827(+)$1	1	178	192	10.3321
(.((((...)))).	chr22:49969493-49969782(-)$1	1	160	174	8.0328
..((((......))	chr2:97535043-97535283(-)$1	1	74	88	8.0622
((((((....))))	chr2:97534278-97534579(-)$1	1	164	178	9.4596
..((((....))))	chr4:78078360-78078621(+)$1	1	128	142	10.3321
(..((((...))))	chr1:19670830-19671074(-)$1	1	219	233	8.3872
).((((....))))	chr6:47544799-47545107(+)$1	1	82	96	9.0894
((((......))))	chr5:126113637-126113895(+)$1	1	135	149	8.4850
((((((....))))	chr16:85645579-85645836(+)$1	1	153	167	8.3424
(.((((....))))	chr20:62331321-62331611(-)$1	1	173	187	9.9953
((((((....))))	chr16:85657950-85658214(+)$1	1	167	181	9.9121
(.((((....))))	chr2:97543336-97543599(-)$1	1	121	135	10.1581
((((......))))	chr16:85672345-85672598(+)$1	1	50	64	8.4850
(.((((....))))	chr17:46702817-46703053(-)$1	1	34	48	9.9953
..((((....))))	chr12:123872676-123872929(+)$1	1	77	91	10.3321
).((((....))))	chr11:824975-825274(+)$1	1	65	79	9.0968
..((((....))))	chr19:41889442-41889750(+)$1	1	271	285	10.3321
(((((((...))))	chr8:107741881-107742104(+)$1	1	196	210	8.6476
))((((....))))	chr12:6619499-6619717(+)$1	1	159	173	9.7550
..((((....))))	chr2:236432599-236432852(+)$1	1	208	222	10.0723
(..((((...))))	chr17:8062526-8062774(-)$1	1	57	71	8.3278
(.((((....))))	chr7:914016-914315(+)$1	1	117	131	10.2041
..((((....))))	chr16:88524251-88524473(+)$1	1	164	178	10.1581
(((((((...))))	chr9:126604591-126604851(-)$1	1	231	245	7.9817
))((((....))))	chr3:6663027-6663302(+)$1	1	192	206	9.7550
..((((....))))	chr10:76002761-76003023(+)$1	1	225	239	10.3321
((((((....))))	chr4:1224999-1225262(-)$1	1	115	129	9.8483
(.((((......))	chr1:167926844-167927073(+)$1	1	116	130	7.9343
..((((....))))	chr8:101963389-101963653(-)$1	1	229	243	8.3980
))((((....))))	chr12:6619566-6619781(+)$1	1	92	106	9.7550
))((((....))))	chr16:87879830-87880070(-)$1	1	187	201	9.7550
))((((....))))	chr8:144885120-144885394(-)$1	1	221	235	8.4996
..((((....))))	chr6:26123583-26123833(-)$1	1	9	23	8.3980
(.((((....))))	chr1:109642760-109642962(+)$1	1	143	157	9.9953

#PSSM
d : 0.29	! : 0.15	e : 0.14	c : 0.10	b : 0.08	: : 0.05	" : 0.03	H : 0.01	f : 0.01	i : 0.01	E : 0.01	# : 0.01	g : 0.01	B : 0.01	
d : 0.24	! : 0.21	[ : 0.17	e : 0.10	: : 0.08	c : 0.05	" : 0.03	H : 0.01	f : 0.01	E : 0.01	# : 0.01	B : 0.01	
d : 0.91	! : 0.05	" : 0.01	e : 0.01	
d : 1.00	
d : 0.78	o : 0.21	
d : 0.78	o : 0.21	
m : 0.59	o : 0.24	d : 0.10	l : 0.05	
m : 0.59	o : 0.24	l : 0.15	
m : 0.59	o : 0.24	l : 0.15	
m : 0.59	o : 0.24	l : 0.10	d : 0.05	
d : 0.96	o : 0.03	
d : 0.96	o : 0.03	
d : 1.00	
d : 0.94	] : 0.03	3 : 0.01	

#score	521.4019976561951
#seq	57
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_CDS_m3_run1.txt

#BEAR
dd[eeeee[cccbb[ccclllccc]bb]ccc]ee	chr5:73931051-73931319(-)$1	268	111	145	11.0800
cc[dddd[a!!cccqqqqqqqqccc22a]dddd]	chr4:24585886-24586151(-)$1	265	40	74	9.3328
c!!bb[ffffffvvvvvvvvvvvvvffffff]bb	chr1:145441080-145441317(+)$1	237	104	138	14.5636
b!!dddd[ccc[bbtttttttttttbb]cccddd	chr2:217363936-217364174(+)$1	238	163	197	17.5693
"ddddeeeeecccxxxxxxxxxxxxxxxccc]ee	chr2:235951239-235951550(+)$1	311	39	73	14.0217
ccc[ccc[ccc[bbqqqqqqqqbb]ccc]ccc22	chr22:29196236-29196461(-)$1	225	142	176	10.1919
cc[eeeee!!dddduuuuuuuuuuuuddddeeee	chr16:56643143-56643390(+)$1	247	43	77	13.5845
[eeeee"""ffffffssssssssssffffff888	chr15:44086061-44086286(+)$1	225	146	180	11.7928
gg[bb!!bbcccvvvvvvvvvvvvvccc]bb22b	chr6:30712038-30712284(-)$1	246	38	72	15.5424
ggggg"""ccc[bb[ccclllccc]bb22ccc22	chr1:145440943-145441153(+)$1	210	4	38	10.5564
dd[a[dddda[ccc[bbqqqqqqqqbb]ccc]a3	chr22:29196261-29196498(-)$1	237	176	210	11.4365
[ccc[a[ccc[ccc[bbqqqqqqqqbb]ccc]cc	chr22:29196197-29196436(-)$1	239	114	148	11.6477
FFFdddd[ffffffrrrrrrrrrffffff333dd	chr16:18812651-18812873(-)$1	222	163	197	11.1714
f]cccgggggggbb[cccooooooccc22bb22g	chr20:278163-278466(+)$1	303	130	164	9.5387
cc[dddd[ccc[bbtttttttttttbb]ccc]dd	chr12:125270551-125270850(-)$1	299	106	140	18.6494
ggggggg[cccvvvvvvvvvvvvvccc]gggggg	chr22:29192964-29193226(-)$1	262	177	211	15.9347
^^^^^^^^^^^^^^^^^^^^^^^^^bb]gggggg	chr7:6505613-6505898(-)$1	285	30	64	12.5264
"eeeee!!bbddddcccbboooooobb]ccc]dd	chr14:35873629-35873919(-)$1	290	78	112	10.1432

#otherMatches

#Seq PSSM
GGUCCAAGGCUGCCCCCAUGCUGGUGGCCAGGUU	chr5:73931051-73931319(-)$1	268	111	145	11.0800
GUGGGGGUCCUCCAGAGUUAAGUGGCUGUCCUCG	chr4:24585886-24586151(-)$1	265	40	74	9.3328
GGAUCCCUGCAUCCUCAACAACAAUGUGCAGUGA	chr1:145441080-145441317(+)$1	237	104	138	14.5636
CACUUGCUCUUUCUGUGGCAAAGUAAGUAAGGCA	chr2:217363936-217364174(+)$1	238	163	197	17.5693
AAGGAGGUUUCUCAAGAAGAACGAAGUCGGGAAA	chr2:235951239-235951550(+)$1	311	39	73	14.0217
CGCACCUGAGCCCCGAGGAGAAGGCGCUGAGGAG	chr22:29196236-29196461(-)$1	225	142	176	10.1919
GCUGCCCUGUGGGCUGUGCCAAGUGUGCCCAGGG	chr16:56643143-56643390(+)$1	247	43	77	13.5845
GGCUCACCCCAAAGUAUUAAAAGUAGCUUUGUAA	chr15:44086061-44086286(+)$1	225	146	180	11.7928
CGACCCCGGCCCCCUCCACCAUCCCGGGACCCCG	chr6:30712038-30712284(-)$1	246	38	72	15.5424
GAGCCCAACCACUCCUCUGCUAGAUGACAUGGAU	chr1:145440943-145441153(+)$1	210	4	38	10.5564
UCACGCACCUGAGCCCCGAGGAGAAGGCGCUGAG	chr22:29196261-29196498(-)$1	237	176	210	11.4365
UCACGCACCUGAGCCCCGAGGAGAAGGCGCUGAG	chr22:29196197-29196436(-)$1	239	114	148	11.6477
CCAGACGUCCGUGGGCUCAAACACCGCGGCCUCG	chr16:18812651-18812873(-)$1	222	163	197	11.1714
cggcccgcggcccggggcgAGGAGGCCGACGGCG	chr20:278163-278466(+)$1	303	130	164	9.5387
GCUGCGCAGCACGCUUGCGUCUUUUGCAUGCCGC	chr12:125270551-125270850(-)$1	299	106	140	18.6494
UAUUUGGUGCCUCAUGUGAGUACUGGUUCCAAGU	chr22:29192964-29193226(-)$1	262	177	211	15.9347
CAUCACCACCCACUACCUGUUCUUCCUGGGCCUC	chr7:6505613-6505898(-)$1	285	30	64	12.5264
GCGGCCGAGCGCCCCCAGGAGUGGGCCAUGGAGG	chr14:35873629-35873919(-)$1	290	78	112	10.1432

#DB
((.(((((.(((((.(((...))).)).))).))	chr5:73931051-73931319(-)$1	1	111	145	11.0800
((.((((.(..(((........)))..).)))).	chr4:24585886-24586151(-)$1	1	40	74	9.3328
(..((.((((((.............)))))).))	chr1:145441080-145441317(+)$1	1	104	138	14.5636
(..((((.(((.((...........)).))))))	chr2:217363936-217364174(+)$1	1	163	197	17.5693
.((((((((((((...............))).))	chr2:235951239-235951550(+)$1	1	39	73	14.0217
(((.(((.(((.((........)).))).)))..	chr22:29196236-29196461(-)$1	1	142	176	10.1919
((.(((((..((((............))))))))	chr16:56643143-56643390(+)$1	1	43	77	13.5845
.(((((...((((((..........))))))...	chr15:44086061-44086286(+)$1	1	146	180	11.7928
((.((..(((((.............))).))..)	chr6:30712038-30712284(-)$1	1	38	72	15.5424
(((((...(((.((.(((...))).))..)))..	chr1:145440943-145441153(+)$1	1	4	38	10.5564
((.(.(((((.(((.((........)).))).).	chr22:29196261-29196498(-)$1	1	176	210	11.4365
.(((.(.(((.(((.((........)).))).))	chr22:29196197-29196436(-)$1	1	114	148	11.6477
)))((((.((((((.........))))))...))	chr16:18812651-18812873(-)$1	1	163	197	11.1714
).)))(((((((((.(((......)))..))..)	chr20:278163-278466(+)$1	1	130	164	9.5387
((.((((.(((.((...........)).))).))	chr12:125270551-125270850(-)$1	1	106	140	18.6494
(((((((.(((.............))).))))))	chr22:29192964-29193226(-)$1	1	177	211	15.9347
.........................)).))))))	chr7:6505613-6505898(-)$1	1	30	64	12.5264
.(((((..(((((((((((......)).))).))	chr14:35873629-35873919(-)$1	1	78	112	10.1432

#PSSM
c : 0.27	g : 0.16	d : 0.11	" : 0.11	[ : 0.11	b : 0.05	F : 0.05	f : 0.05	^ : 0.05	
c : 0.27	d : 0.16	g : 0.16	! : 0.11	e : 0.11	F : 0.05	] : 0.05	^ : 0.05	
[ : 0.33	c : 0.16	! : 0.11	e : 0.11	g : 0.11	d : 0.05	F : 0.05	^ : 0.05	
d : 0.27	e : 0.22	b : 0.11	g : 0.11	c : 0.11	[ : 0.05	a : 0.05	^ : 0.05	
d : 0.27	e : 0.22	b : 0.11	c : 0.11	g : 0.11	[ : 0.11	^ : 0.05	
e : 0.27	d : 0.27	g : 0.11	[ : 0.05	c : 0.05	! : 0.05	" : 0.05	a : 0.05	^ : 0.05	
d : 0.27	e : 0.16	" : 0.11	! : 0.11	g : 0.11	f : 0.05	c : 0.05	[ : 0.05	^ : 0.05	
[ : 0.33	e : 0.16	" : 0.11	f : 0.05	b : 0.05	d : 0.05	c : 0.05	g : 0.05	^ : 0.05	! : 0.05	
c : 0.33	f : 0.11	b : 0.11	[ : 0.05	a : 0.05	e : 0.05	! : 0.05	" : 0.05	d : 0.05	g : 0.05	^ : 0.05	
c : 0.44	f : 0.16	! : 0.11	e : 0.05	a : 0.05	g : 0.05	^ : 0.05	b : 0.05	
c : 0.44	f : 0.16	d : 0.11	[ : 0.11	! : 0.05	g : 0.05	^ : 0.05	
c : 0.33	[ : 0.22	f : 0.16	d : 0.11	g : 0.05	v : 0.05	^ : 0.05	
b : 0.33	c : 0.22	v : 0.16	d : 0.11	f : 0.11	^ : 0.05	
b : 0.33	c : 0.16	v : 0.16	d : 0.11	f : 0.11	x : 0.05	^ : 0.05	
[ : 0.27	v : 0.16	q : 0.11	t : 0.11	x : 0.05	u : 0.05	f : 0.05	r : 0.05	^ : 0.05	c : 0.05	
c : 0.22	v : 0.16	q : 0.11	t : 0.11	b : 0.11	x : 0.05	u : 0.05	s : 0.05	r : 0.05	^ : 0.05	
c : 0.22	v : 0.16	q : 0.11	t : 0.11	b : 0.11	x : 0.05	u : 0.05	s : 0.05	r : 0.05	^ : 0.05	
q : 0.22	c : 0.16	v : 0.16	t : 0.11	x : 0.05	u : 0.05	s : 0.05	r : 0.05	^ : 0.05	b : 0.05	
q : 0.22	v : 0.16	l : 0.11	t : 0.11	x : 0.05	u : 0.05	s : 0.05	r : 0.05	o : 0.05	^ : 0.05	b : 0.05	
q : 0.22	v : 0.16	l : 0.11	t : 0.11	o : 0.11	x : 0.05	u : 0.05	s : 0.05	r : 0.05	^ : 0.05	
q : 0.22	v : 0.16	l : 0.11	t : 0.11	o : 0.11	x : 0.05	u : 0.05	s : 0.05	r : 0.05	^ : 0.05	
q : 0.22	v : 0.16	c : 0.11	t : 0.11	o : 0.11	x : 0.05	u : 0.05	s : 0.05	r : 0.05	^ : 0.05	
c : 0.16	v : 0.16	t : 0.11	q : 0.11	o : 0.11	x : 0.05	b : 0.05	u : 0.05	s : 0.05	r : 0.05	^ : 0.05	
c : 0.16	v : 0.16	t : 0.11	q : 0.11	o : 0.11	x : 0.05	b : 0.05	u : 0.05	s : 0.05	f : 0.05	^ : 0.05	
] : 0.16	c : 0.16	v : 0.11	t : 0.11	q : 0.11	x : 0.05	u : 0.05	s : 0.05	f : 0.05	^ : 0.05	o : 0.05	
b : 0.44	c : 0.22	f : 0.16	2 : 0.05	x : 0.05	u : 0.05	
b : 0.44	c : 0.22	f : 0.16	2 : 0.05	x : 0.05	d : 0.05	
] : 0.44	f : 0.16	c : 0.11	2 : 0.11	a : 0.05	x : 0.05	d : 0.05	
c : 0.38	] : 0.16	f : 0.16	2 : 0.11	g : 0.11	d : 0.05	
c : 0.50	d : 0.11	f : 0.11	b : 0.11	g : 0.11	3 : 0.05	
c : 0.50	f : 0.11	b : 0.11	g : 0.11	d : 0.05	e : 0.05	3 : 0.05	
] : 0.38	d : 0.11	c : 0.11	2 : 0.11	g : 0.11	e : 0.05	8 : 0.05	3 : 0.05	
d : 0.27	2 : 0.22	e : 0.16	g : 0.11	b : 0.05	8 : 0.05	a : 0.05	c : 0.05	
d : 0.22	e : 0.16	g : 0.16	b : 0.11	2 : 0.11	] : 0.05	8 : 0.05	3 : 0.05	c : 0.05	

#score	229.28443164148325
#seq	18
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_CDS_m1_run2.txt

#BEAR
========bbvvvvvvvvvvvvvbb]==========b	chrM:3549-3773(+)$1	224	112	149	17.2140
[dddd[bb[cccooooooccc22bb]dddd]eeeee]	chrM:14218-14422(-)$1	204	54	91	26.7729
[dddd[bb[cccooooooccc22bb]dddd]eeeee]	chrM:14270-14498(-)$1	228	130	167	26.7729
eccca[ffffffooooooffffff]a]ccc]eeeeea	chr1:109289274-109289508(+)$1	234	68	105	15.6581
ggg[a[bb[cccooooooccc]bb]a22ggggggg]g	chr19:18547582-18547872(-)$1	290	145	182	18.4833
gccc[ccc[cccccclllccc22ccc]cccccc]ggg	chr2:54197761-54198043(-)$1	282	158	195	14.4497
========bbvvvvvvvvvvvvvbb]==========b	chrM:3632-3876(+)$1	244	29	66	17.2140
cdddd[a"""cccmmmmccca]dddd]ccc]eeeeed	chr8:30669835-30670091(-)$1	256	25	62	15.0260
[dddd[bb[cccooooooccc22bb]dddd]eeeee]	chrM:14203-14413(-)$1	210	45	82	26.7729
========bbvvvvvvvvvvvvvbb]==========b	chrM:3519-3749(+)$1	230	142	179	17.2140
[dddd[bb[cccooooooccc22bb]dddd]eeeee]	chrM:14213-14418(-)$1	205	50	87	26.7729
c[ccc[bb!!cccoooooocccbbccc]ccc]dddd]	chr15:79165208-79165491(+)$1	283	16	53	17.0529
[a"""ddddbbccclllccc333bb]dddd333a]dd	chr7:77166720-77166992(+)$1	272	148	185	15.3235
[dddd[bb[cccooooooccc22bb]dddd]eeeee]	chrM:14247-14449(-)$1	202	81	118	26.7729
[dddd[bb[cccooooooccc22bb]dddd]eeeee]	chrM:14249-14466(-)$1	217	98	135	26.7729
========bbvvvvvvvvvvvvvbb]==========D	chrM:3459-3706(+)$1	247	202	239	16.4802
[dddd[bb[cccooooooccc22bb]dddd]eeeee]	chrM:14222-14432(-)$1	210	64	101	26.7729
[dddd[bb[cccooooooccc22bb]dddd]eeeee]	chrM:14241-14447(-)$1	206	79	116	26.7729
[dddd[bb[cccooooooccc22bb]dddd]eeeee]	chrM:14232-14441(-)$1	209	73	110	26.7729

#otherMatches

#Seq PSSM
UCAGGGUGAGCAUCAAACUCAAACUACGCCCUGAUCG	chrM:3549-3773(+)$1	224	112	149	17.2140
GUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUG	chrM:14218-14422(-)$1	204	54	91	26.7729
GUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUG	chrM:14270-14498(-)$1	228	130	167	26.7729
UCCGCAGUGUCGGGAAGAUGGCGCCGCCGGUGGCAGA	chr1:109289274-109289508(+)$1	234	68	105	15.6581
CCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUCCCCC	chr19:18547582-18547872(-)$1	290	145	182	18.4833
ccggagccgggcgggcgucccgagccgggcccgcggg	chr2:54197761-54198043(-)$1	282	158	195	14.4497
UCAGGGUGAGCAUCAAACUCAAACUACGCCCUGAUCG	chrM:3632-3876(+)$1	244	29	66	17.2140
CCUGUGGGACCUggcgacggcggcggagggagagggg	chr8:30669835-30670091(-)$1	256	25	62	15.0260
GUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUG	chrM:14203-14413(-)$1	210	45	82	26.7729
UCAGGGUGAGCAUCAAACUCAAACUACGCCCUGAUCG	chrM:3519-3749(+)$1	230	142	179	17.2140
GUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUG	chrM:14213-14418(-)$1	205	50	87	26.7729
CGCUGGCAAAUCCGGCCCAGGAUGUAGAGCUGGCAGU	chr15:79165208-79165491(+)$1	283	16	53	17.0529
GCAAGUGGAGAUCCUGAGGAAAUUCAUCCAGAGGGUC	chr7:77166720-77166992(+)$1	272	148	185	15.3235
GUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUG	chrM:14247-14449(-)$1	202	81	118	26.7729
GUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUG	chrM:14249-14466(-)$1	217	98	135	26.7729
UCAGGGUGAGCAUCAAACUCAAACUACGCCCUGAUCG	chrM:3459-3706(+)$1	247	202	239	16.4802
GUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUG	chrM:14222-14432(-)$1	210	64	101	26.7729
GUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUG	chrM:14241-14447(-)$1	206	79	116	26.7729
GUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUG	chrM:14232-14441(-)$1	209	73	110	26.7729

#DB
((((((((((.............)).))))))))))(	chrM:3549-3773(+)$1	1	112	149	17.2140
.((((.((.(((......)))..)).)))).))))).	chrM:14218-14422(-)$1	1	54	91	26.7729
.((((.((.(((......)))..)).)))).))))).	chrM:14270-14498(-)$1	1	130	167	26.7729
(((((.((((((......)))))).).))).)))))(	chr1:109289274-109289508(+)$1	1	68	105	15.6581
(((.(.((.(((......))).)).)..))))))).)	chr19:18547582-18547872(-)$1	1	145	182	18.4833
((((.(((.((((((...)))..))).)))))).)))	chr2:54197761-54198043(-)$1	1	158	195	14.4497
((((((((((.............)).))))))))))(	chrM:3632-3876(+)$1	1	29	66	17.2140
(((((.(...(((....)))).)))).))).))))))	chr8:30669835-30670091(-)$1	1	25	62	15.0260
.((((.((.(((......)))..)).)))).))))).	chrM:14203-14413(-)$1	1	45	82	26.7729
((((((((((.............)).))))))))))(	chrM:3519-3749(+)$1	1	142	179	17.2140
.((((.((.(((......)))..)).)))).))))).	chrM:14213-14418(-)$1	1	50	87	26.7729
(.(((.((..(((......)))))))).))).)))).	chr15:79165208-79165491(+)$1	1	16	53	17.0529
.(...(((((((((...)))...)).))))...).))	chr7:77166720-77166992(+)$1	1	148	185	15.3235
.((((.((.(((......)))..)).)))).))))).	chrM:14247-14449(-)$1	1	81	118	26.7729
.((((.((.(((......)))..)).)))).))))).	chrM:14249-14466(-)$1	1	98	135	26.7729
((((((((((.............)).)))))))))))	chrM:3459-3706(+)$1	1	202	239	16.4802
.((((.((.(((......)))..)).)))).))))).	chrM:14222-14432(-)$1	1	64	101	26.7729
.((((.((.(((......)))..)).)))).))))).	chrM:14241-14447(-)$1	1	79	116	26.7729
.((((.((.(((......)))..)).)))).))))).	chrM:14232-14441(-)$1	1	73	110	26.7729

#PSSM
[ : 0.52	= : 0.21	g : 0.10	c : 0.10	e : 0.05	
d : 0.52	= : 0.21	c : 0.10	g : 0.05	[ : 0.05	a : 0.05	
d : 0.52	= : 0.21	c : 0.15	g : 0.05	" : 0.05	
d : 0.52	= : 0.21	c : 0.15	[ : 0.05	" : 0.05	
d : 0.52	= : 0.21	a : 0.10	[ : 0.05	c : 0.05	" : 0.05	
[ : 0.68	= : 0.21	c : 0.05	d : 0.05	
b : 0.57	= : 0.21	f : 0.05	c : 0.05	a : 0.05	d : 0.05	
b : 0.57	= : 0.21	f : 0.05	c : 0.05	" : 0.05	d : 0.05	
[ : 0.57	b : 0.21	f : 0.05	" : 0.05	! : 0.05	d : 0.05	
c : 0.57	b : 0.26	f : 0.05	" : 0.05	! : 0.05	
c : 0.68	v : 0.21	f : 0.05	b : 0.05	
c : 0.73	v : 0.21	f : 0.05	
o : 0.57	v : 0.21	c : 0.21	
o : 0.63	v : 0.21	c : 0.10	m : 0.05	
o : 0.63	v : 0.21	c : 0.05	m : 0.05	l : 0.05	
o : 0.63	v : 0.21	l : 0.10	m : 0.05	
o : 0.63	v : 0.21	l : 0.10	m : 0.05	
o : 0.63	v : 0.21	c : 0.10	l : 0.05	
c : 0.68	v : 0.21	f : 0.05	o : 0.05	
c : 0.73	v : 0.21	f : 0.05	
c : 0.63	v : 0.21	f : 0.05	a : 0.05	3 : 0.05	
2 : 0.52	v : 0.21	] : 0.10	f : 0.05	c : 0.05	3 : 0.05	
2 : 0.52	v : 0.21	b : 0.10	f : 0.05	d : 0.05	3 : 0.05	
b : 0.84	f : 0.05	c : 0.05	d : 0.05	
b : 0.73	] : 0.10	c : 0.10	d : 0.05	
] : 0.73	a : 0.10	c : 0.10	d : 0.05	
d : 0.52	= : 0.21	] : 0.15	2 : 0.05	c : 0.05	
d : 0.52	= : 0.21	c : 0.15	2 : 0.05	] : 0.05	
d : 0.52	= : 0.21	c : 0.21	g : 0.05	
d : 0.52	= : 0.21	c : 0.21	g : 0.05	
] : 0.57	= : 0.21	c : 0.10	g : 0.05	3 : 0.05	
e : 0.57	= : 0.21	g : 0.05	c : 0.05	] : 0.05	3 : 0.05	
e : 0.57	= : 0.21	g : 0.05	c : 0.05	d : 0.05	3 : 0.05	
e : 0.57	= : 0.21	g : 0.05	] : 0.05	d : 0.05	a : 0.05	
e : 0.57	= : 0.21	g : 0.10	d : 0.05	] : 0.05	
e : 0.57	= : 0.21	d : 0.10	] : 0.05	g : 0.05	
] : 0.52	b : 0.15	g : 0.10	d : 0.10	a : 0.05	D : 0.05	

#score	405.0728570476052
#seq	19
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_UTR_m2_run2.txt

#BEAR
e!!bb[bb!!eeeeellleeeee]bbbbeeee	chr9:139743569-139743832(+)$1	263	226	258	10.9380
!!ccc[bb[eeeeennnnneeeeebbccc22d	chr16:29678293-29678572(+)$1	279	134	166	10.4797
eeccc]ccceeeeeooooooeeeeeeeeee[c	chr1:2326714-2327008(+)$1	294	219	251	9.4876
""ggggggg!!cccmmmmccc22ggggggg22	chr11:64510990-64511243(-)$1	253	198	230	10.9349
bbdddd"""eeeeemmmmeeeee333dddd::	chr17:1464435-1464671(-)$1	236	82	114	12.2356
##bb[a[a[eeeeellleeeeeaabb22dddd	chr16:3823526-3823784(-)$1	258	19	51	10.6567
cc[bb[eeeee[ammmmaeeeee]bb]ccc]e	chr19:12832100-12832409(-)$1	309	133	165	10.4597
dd[dddd[a!!cccmmmmccc333a]dddd]d	chr22:18256654-18256917(-)$1	263	66	98	11.9023
[ccc[ccc[eeeeennnnneeeeecccccc]c	chr19:19639330-19639588(+)$1	258	99	131	11.4820
"""dddd!!eeeeellleeeee333dddd333	chr11:61583119-61583376(+)$1	257	151	183	13.7019
dd[a[a!!eeeeennnnneeeee22a]adddd	chr19:12832397-12832740(-)$1	343	169	201	11.9045
:eeeee[gggggggmmmmggggggg22eeeee	chr11:126146853-126147099(+)$1	246	212	244	9.2151
gggg[dddd!!cccmmmmccc22ddddggggg	chr11:47379723-47379953(-)$1	230	44	76	9.8922
a[dddd"""eeeeemmmmeeeeedddd]a]a4	chr17:37076147-37076393(+)$1	246	52	84	12.6074
c!!ccc[dddd[bbmmmmbb]dddd]ccc333	chr2:172379458-172379707(+)$1	249	212	244	9.2936
dddd!!ccceeeeemmmmeeeee]ccc]dddd	chr3:197477217-197477513(+)$1	296	235	267	12.4714
bb[a[ccc!!ddddmmmmdddd22ccc22a]b	chr4:78078322-78078654(+)$1	332	158	190	11.6697
ff"""ccc!!ddddmmmmdddd4444ccc22f	chr12:48172666-48172942(+)$1	276	47	79	12.2738
d"""dddd!!eeeeellleeeee333dddd]d	chr1:27634475-27634734(+)$1	259	115	147	13.1919
ccc[ffffffddddmmmmdddd333ffffff]	chr19:41307000-41307271(+)$1	271	193	225	10.8105
$$bb[ddddeeeeemmmmeeeee333dddd]b	chr17:48542225-48542520(+)$1	295	244	276	13.1614
=====####ddddoooooodddd=========	chr2:225338431-225338732(-)$1	301	26	58	10.9115
"""bb"""ccccccmmmmccc333ccc333bb	chr17:7093163-7093422(-)$1	259	101	133	11.4387
###dddd[eeeeennnnneeeee]dddd333e	chr21:46644416-46644689(+)$1	273	123	155	11.6307
ee[a[ccc!!ddddmmmmddddccc]a]eeee	chr17:39942199-39942457(-)$1	258	119	151	11.7237
e[dddd"""eeeeemmmmeeeeeddddeeeee	chr8:102217082-102217373(-)$1	291	41	73	12.6625
[eeeee[a[eeeeemmmmeeeee]aeeeee]d	chr7:100027492-100027763(+)$1	271	196	228	13.6780
cc[ffffff!!cccmmmmccc]ffffffcccd	chr7:6523270-6523541(-)$1	271	142	174	9.2997
###bb[bb[eeeeemmmmeeeeebb]bb22ee	chr12:53854788-53855005(+)$1	217	170	202	11.2142
+++ccc"""eeeeellleeeee333ccc333i	chr20:35408432-35408702(-)$1	270	38	70	12.0344
!!ffffffdddd[ammmmadddd333ffffff	chr20:31172499-31172749(-)$1	250	22	54	10.7175
bb[===========mmmm===========bb2	chr16:2581169-2581425(+)$1	256	28	60	10.6642
[eeeee$$$$$cccnnnnnccc333eeeeecc	chrX:152939477-152939728(-)$1	251	152	184	9.7486
eeeee!!eeeeeooooooeeeee22eeeeegg	chr5:86689980-86690239(-)$1	259	34	66	11.4744
cc[ccc!!eeeeennnnneeeee22ccc]ccc	chr1:36789182-36789471(+)$1	289	149	181	12.1347
:dddd[ccc[ddddmmmmdddd]ccc]ddddb	chr9:140175610-140175862(+)$1	252	80	112	9.7280
===========[ccclllccc]==========	chr14:67708011-67708365(+)$1	354	117	149	10.8624
"eeeee!!fffffflllffffff4444eeeee	chr22:50013899-50014170(-)$1	271	139	171	9.1938
bb:===========mmmm===========eee	chr6:15248991-15249329(+)$1	338	276	308	10.3193
fffdddd"""eeeeellleeeee333dddd]f	chr19:12778651-12778989(-)$1	338	211	243	12.6959
eeeee[a[bbeeeeellleeeee]bb]a]eee	chr3:185542640-185542942(-)$1	302	15	47	10.6209
eeee"""ddddcccmmmmccc4444dddd333	chr11:73116942-73117243(-)$1	301	244	276	11.4121
h####bb!!eeeeemmmmeeeee22bbhhhhh	chr19:59056576-59056870(+)$1	294	143	175	11.9954
:iiiiiiiiieeeeellleeeee333iiiiii	chr16:67596152-67596441(-)$1	289	1	33	12.3730
fffeeeee!!ddddmmmmdddd4444eeeeec	chr11:61595607-61595862(+)$1	255	27	59	11.9126
eeffffff[eeeeemmmmeeeee]ffffff::	chr1:228364022-228364308(+)$1	286	224	256	9.9977
ff[aeeeee[ddddmmmmdddd333eeeee]a	chr6:118030881-118031149(+)$1	268	172	204	12.3982
iiiiiiiiieeeeemmmmeeeee22iiiiiii	chr5:179248586-179248843(+)$1	257	131	163	13.8334
%ggggggg"""cccmmmmccc333ggggggg2	chr5:87490835-87491105(-)$1	270	116	148	11.3102
iiiiiiii!!ddddmmmmdddd22iiiiiiii	chr1:55505790-55506022(+)$1	232	150	182	12.5568
f[eeeee[eeeeennnnneeeee22eeeee]f	chr12:123463973-123464293(+)$1	320	71	103	11.7005
:ggggggg"""cccnnnnnccc333ggggggg	chr11:58346630-58346893(+)$1	263	126	158	9.9983
###eeeeeeeeeennnnneeeee22eeeee66	chr17:7476520-7476781(+)$1	261	176	208	10.9854
[ccc[ddddaddddmmmmdddd22a]dddd]c	chr1:155532258-155532629(-)$1	371	68	100	11.6461
:dddd!!a[eeeeennnnneeeee]a]dddd:	chrX:152938438-152938705(-)$1	267	224	256	9.4257
ee$$$$$ccc[cccmmmmccc]ccc333eeee	chr20:62331469-62331721(-)$1	252	158	190	9.7109

#otherMatches

#Seq PSSM
AUUGGUCGUCGCUCUCGCAGAGCCCGCCUCCC	chr9:139743569-139743832(+)$1	263	226	258	10.9380
GAGCUCGGAUGGAACCAGCUUCUACCAGCCAG	chr16:29678293-29678572(+)$1	279	134	166	10.4797
GGCCAGUGGGGUGGACAGUCCCGCCCACGCAG	chr1:2326714-2327008(+)$1	294	219	251	9.4876
UUCCCGCUGACGCCUCCUGGCCGCAGCGGGCU	chr11:64510990-64511243(-)$1	253	198	230	10.9349
CUCCUGAAAUCCAGGGGACUGGGGGACAGGUG	chr17:1464435-1464671(-)$1	236	82	114	12.2356
CAGGCGUGUCACAGGUACUGUGCCCCACUGGG	chr16:3823526-3823784(-)$1	258	19	51	10.6567
GUGUCGGGGGAAGGGGACUCUUCAGGGACUGU	chr19:12832100-12832409(-)$1	309	133	165	10.4597
UGGCCUGGGGAUUCAGGGGAGGGGUGCGGGGC	chr22:18256654-18256917(-)$1	263	66	98	11.9023
GUCUGCGGAGGGGCUCCUCGCUCCCUGAGAGG	chr19:19639330-19639588(+)$1	258	99	131	11.4820
AAACAGCGGUCCGCUCCGCGGAAUAGCUGAAG	chr11:61583119-61583376(+)$1	257	151	183	13.7019
GAAGGCGACUGGGAUCGGUCCAGGGGGCUCCU	chr19:12832397-12832740(-)$1	343	169	201	11.9045
UGAAGGUAACUGGCAAGGGCUGGUUUUCCUUU	chr11:126146853-126147099(+)$1	246	212	244	9.2151
ugccugugugAGCAGGGAUGUGAGCAUGGUAU	chr11:47379723-47379953(-)$1	230	44	76	9.8922
UGAGGGUAUGAAGAGCUGUCUUCCCCUGAGAG	chr17:37076147-37076393(+)$1	246	52	84	12.6074
GGACCGAGCCUGCGCGAUCGGGGGCGCGGAAA	chr2:172379458-172379707(+)$1	249	212	244	9.2936
GGCGUUCCAGGCCGGCGCCGGCCAUGGCUGCC	chr3:197477217-197477513(+)$1	296	235	267	12.4714
AUGGAGCCGGGGCUGUGAGGCCGAGGCGGCGG	chr4:78078322-78078654(+)$1	332	158	190	11.6697
cauauucuugguauucuuaugcaaauaggccu	chr12:48172666-48172942(+)$1	276	47	79	12.2738
cccccUGCCUGCCCAGCCUGGGCCCUGCAGUG	chr1:27634475-27634734(+)$1	259	115	147	13.1919
GAUUGCCUGGGUGGAAGGCCAUGAACCAGGCU	chr19:41307000-41307271(+)$1	271	193	225	10.8105
AUGGUGGAAGUCCUGGGCAGGACCUUUUCCUC	chr17:48542225-48542520(+)$1	295	244	276	13.1614
UUUUCUUUACUGUAUGAAAACAGGAAAAUAAA	chr2:225338431-225338732(-)$1	301	26	58	10.9115
GGGUCGGGGGUCGGGUGUCCGGGAGCCAGGGA	chr17:7093163-7093422(-)$1	259	101	133	11.4387
GAGCCCUGGGCGGGGUGGCUGUCAGGGGGAAC	chr21:46644416-46644689(+)$1	273	123	155	11.6307
GCCCAGCUUGCCCAACUGUGGGGGCCGAGCGC	chr17:39942199-39942457(-)$1	258	119	151	11.7237
UUGGUCCAGGGUCCGUGAGGACUGGCUAGAUG	chr8:102217082-102217373(-)$1	291	41	73	12.6625
GCCGCCGCCGCUCAAAGAUGAGUCGGGCGGAG	chr7:100027492-100027763(+)$1	271	196	228	13.6780
CGCGGGACCCCGCUCUGCAGUCGGUCCCCGCG	chr7:6523270-6523541(-)$1	271	142	174	9.2997
GGAGGGCCAUUCUGGGGACAGAGGGACUGAUC	chr12:53854788-53855005(+)$1	217	170	202	11.2142
uguggauuggccuauucuagguaucucuuuua	chr20:35408432-35408702(-)$1	270	38	70	12.0344
ggcccgccccCGAGGGCGCCGGGCGCGGCGGG	chr20:31172499-31172749(-)$1	250	22	54	10.7175
CCACCUCCCUGGCUGGAGGGUCGGGGAGGGGC	chr16:2581169-2581425(+)$1	256	28	60	10.6642
GAAGGCAGAGACUGGAAGGCAGAGAGCCUUGC	chrX:152939477-152939728(-)$1	251	152	184	9.7486
ACGUUUAACUUUAUUUAAAAAGUAUAAUGUGA	chr5:86689980-86690239(-)$1	259	34	66	11.4744
gagggAGAGCCCGGCCCGCGGGCCGUCCGUCC	chr1:36789182-36789471(+)$1	289	149	181	12.1347
GCGCCGUCGAGGUGGGGGCACCGCGAAGGUGG	chr9:140175610-140175862(+)$1	252	80	112	9.7280
GGUGGGGAGUCGGGAGUUUCUGGAUUCUUUAU	chr14:67708011-67708365(+)$1	354	117	149	10.8624
accaaggcucacuugggaggugacaagcuugg	chr22:50013899-50014170(-)$1	271	139	171	9.1938
GGAGCGGGGAGGAGGCGCCUCCUUUCUGCAGG	chr6:15248991-15249329(+)$1	338	276	308	10.3193
UUGCUUACUUCAUAAACCUUGUGUCUUAAGUC	chr19:12778651-12778989(-)$1	338	211	243	12.6959
CCCCCGGGCgggccgggccggccgcggugggg	chr3:185542640-185542942(-)$1	302	15	47	10.6209
UCCUUAGACCUGCCAAGCGGCUGCAGGGUGGU	chr11:73116942-73117243(-)$1	301	244	276	11.4121
AGCAGGGGAAUGGUGGGGGCCAUAACCUGGGU	chr19:59056576-59056870(+)$1	294	143	175	11.9954
UGCGCCUGCGUCGGCGCUGCCGGGGCCGCGGG	chr16:67596152-67596441(-)$1	289	1	33	12.3730
CUUGGGGGCACUGGGAAGCCAGGGAUCCUCCG	chr11:61595607-61595862(+)$1	255	27	59	11.9126
CCCAGGCUGGGCACGUGGGUGCCGAGUCUGCA	chr1:228364022-228364308(+)$1	286	224	256	9.9977
AUGACUAGAUAGCAAUAGUGUUUUUUUUAGAU	chr6:118030881-118031149(+)$1	268	172	204	12.3982
GAUGUUUUCCCAUUGGCAAGUGGACGAGAACG	chr5:179248586-179248843(+)$1	257	131	163	13.8334
GUGAGUGUAUUUAAAGUUUUAUGGACGCUUAA	chr5:87490835-87491105(-)$1	270	116	148	11.3102
UUGCUGGGGCGUGCGGCUGCGCUAUUCAGUGG	chr1:55505790-55506022(+)$1	232	150	182	12.5568
AGUUCAGGUUUGUCAGAAGCAGGGUCUGGAAU	chr12:123463973-123464293(+)$1	320	71	103	11.7005
GCCGGGGGAGACGGAAGAGCCGAGACCCCCGG	chr11:58346630-58346893(+)$1	263	126	158	9.9983
GCUGGUUUUCUUGACGGCCAGGACUGAGCCUA	chr17:7476520-7476781(+)$1	261	176	208	10.9854
GAGGGCCUGCGCCGGCGCCGGCUUGACAGGGC	chr1:155532258-155532629(-)$1	371	68	100	11.6461
CCGCGAGAGGCUCGGCUCgugagugugcgcgc	chrX:152938438-152938705(-)$1	267	224	256	9.4257
UUUCCACAGGGCGCAGCGGCGGCCUUUCGAGG	chr20:62331469-62331721(-)$1	252	158	190	9.7109

#DB
(..((.((..(((((...))))).))))))))	chr9:139743569-139743832(+)$1	1	226	258	10.9380
..(((.((.(((((.....))))))))))..)	chr16:29678293-29678572(+)$1	1	134	166	10.4797
))))).)))(((((......)))))(((((.(	chr1:2326714-2327008(+)$1	1	219	251	9.4876
..(((((((..(((....)))..)))))))..	chr11:64510990-64511243(-)$1	1	198	230	10.9349
))((((...(((((....)))))...))))..	chr17:1464435-1464671(-)$1	1	82	114	12.2356
..((.(.(.(((((...)))))))))..))))	chr16:3823526-3823784(-)$1	1	19	51	10.6567
((.((.(((((.(....)))))).)).))).)	chr19:12832100-12832409(-)$1	1	133	165	10.4597
((.((((.(..(((....)))...).)))).)	chr22:18256654-18256917(-)$1	1	66	98	11.9023
.(((.(((.(((((.....))))))))))).)	chr19:19639330-19639588(+)$1	1	99	131	11.4820
...((((..(((((...)))))...))))...	chr11:61583119-61583376(+)$1	1	151	183	13.7019
((.(.(..(((((.....)))))..).)))))	chr19:12832397-12832740(-)$1	1	169	201	11.9045
.(((((.(((((((....)))))))..)))))	chr11:126146853-126147099(+)$1	1	212	244	9.2151
((((.((((..(((....)))..)))))))))	chr11:47379723-47379953(-)$1	1	44	76	9.8922
(.((((...(((((....))))))))).).).	chr17:37076147-37076393(+)$1	1	52	84	12.6074
(..(((.((((.((....)).)))).)))...	chr2:172379458-172379707(+)$1	1	212	244	9.2936
((((..((((((((....))))).))).))))	chr3:197477217-197477513(+)$1	1	235	267	12.4714
((.(.(((..((((....))))..)))..).)	chr4:78078322-78078654(+)$1	1	158	190	11.6697
((...(((..((((....))))....)))..)	chr12:48172666-48172942(+)$1	1	47	79	12.2738
(...((((..(((((...)))))...)))).)	chr1:27634475-27634734(+)$1	1	115	147	13.1919
(((.((((((((((....))))...)))))).	chr19:41307000-41307271(+)$1	1	193	225	10.8105
..((.(((((((((....)))))...)))).)	chr17:48542225-48542520(+)$1	1	244	276	13.1614
(((((....((((......)))))))))))))	chr2:225338431-225338732(-)$1	1	26	58	10.9115
...((...((((((....)))...)))...))	chr17:7093163-7093422(-)$1	1	101	133	11.4387
...((((.(((((.....))))).))))...)	chr21:46644416-46644689(+)$1	1	123	155	11.6307
((.(.(((..((((....))))))).).))))	chr17:39942199-39942457(-)$1	1	119	151	11.7237
(.((((...(((((....))))))))))))))	chr8:102217082-102217373(-)$1	1	41	73	12.6625
.(((((.(.(((((....))))).)))))).)	chr7:100027492-100027763(+)$1	1	196	228	13.6780
((.((((((..(((....))).))))))))))	chr7:6523270-6523541(-)$1	1	142	174	9.2997
...((.((.(((((....))))))).))..))	chr12:53854788-53855005(+)$1	1	170	202	11.2142
...(((...(((((...)))))...)))...)	chr20:35408432-35408702(-)$1	1	38	70	12.0344
..((((((((((.(....)))))...))))))	chr20:31172499-31172749(-)$1	1	22	54	10.7175
((.(((((((((((....))))))))))))).	chr16:2581169-2581425(+)$1	1	28	60	10.6642
.(((((.....(((.....)))...)))))))	chrX:152939477-152939728(-)$1	1	152	184	9.7486
(((((..(((((......)))))..)))))((	chr5:86689980-86690239(-)$1	1	34	66	11.4744
((.(((..(((((.....)))))..))).)))	chr1:36789182-36789471(+)$1	1	149	181	12.1347
.((((.(((.((((....)))).))).))))(	chr9:140175610-140175862(+)$1	1	80	112	9.7280
(((((((((((.(((...))).))))))))))	chr14:67708011-67708365(+)$1	1	117	149	10.8624
.(((((..((((((...))))))....)))))	chr22:50013899-50014170(-)$1	1	139	171	9.1938
)).(((((((((((....)))))))))))(((	chr6:15248991-15249329(+)$1	1	276	308	10.3193
(((((((...(((((...)))))...)))).)	chr19:12778651-12778989(-)$1	1	211	243	12.6959
(((((.(.(((((((...))))).)).).)))	chr3:185542640-185542942(-)$1	1	15	47	10.6209
((((...(((((((....)))....))))...	chr11:73116942-73117243(-)$1	1	244	276	11.4121
(....((..(((((....)))))..)))))))	chr19:59056576-59056870(+)$1	1	143	175	11.9954
.((((((((((((((...)))))...))))))	chr16:67596152-67596441(-)$1	1	1	33	12.3730
)))(((((..((((....))))....)))))(	chr11:61595607-61595862(+)$1	1	27	59	11.9126
))((((((.(((((....))))).))))))..	chr1:228364022-228364308(+)$1	1	224	256	9.9977
((.((((((.((((....))))...))))).)	chr6:118030881-118031149(+)$1	1	172	204	12.3982
((((((((((((((....)))))..)))))))	chr5:179248586-179248843(+)$1	1	131	163	13.8334
.(((((((...(((....)))...))))))).	chr5:87490835-87491105(-)$1	1	116	148	11.3102
((((((((..((((....))))..))))))))	chr1:55505790-55506022(+)$1	1	150	182	12.5568
(.(((((.(((((.....)))))..))))).)	chr12:123463973-123464293(+)$1	1	71	103	11.7005
.(((((((...(((.....)))...)))))))	chr11:58346630-58346893(+)$1	1	126	158	9.9983
...((((((((((.....)))))..)))))..	chr17:7476520-7476781(+)$1	1	176	208	10.9854
.(((.(((((((((....))))..).)))).)	chr1:155532258-155532629(-)$1	1	68	100	11.6461
.((((..(.(((((.....))))).).)))).	chrX:152938438-152938705(-)$1	1	224	256	9.4257
((.....(((.(((....))).)))...))))	chr20:62331469-62331721(-)$1	1	158	190	9.7109

#PSSM
e : 0.16	c : 0.08	: : 0.08	f : 0.08	" : 0.07	b : 0.07	# : 0.07	d : 0.07	[ : 0.07	! : 0.03	= : 0.03	i : 0.03	g : 0.01	a : 0.01	$ : 0.01	+ : 0.01	h : 0.01	% : 0.01	
e : 0.19	c : 0.10	# : 0.08	d : 0.08	! : 0.07	" : 0.07	b : 0.07	f : 0.07	g : 0.05	[ : 0.05	i : 0.05	= : 0.03	$ : 0.01	+ : 0.01	
[ : 0.16	e : 0.14	d : 0.10	c : 0.08	g : 0.07	" : 0.07	# : 0.07	f : 0.07	i : 0.05	! : 0.03	b : 0.03	= : 0.03	+ : 0.01	: : 0.01	$ : 0.01	
d : 0.17	e : 0.17	c : 0.12	b : 0.10	g : 0.07	a : 0.07	= : 0.07	f : 0.05	i : 0.05	" : 0.03	[ : 0.01	# : 0.01	$ : 0.01	
d : 0.17	e : 0.17	[ : 0.14	c : 0.08	b : 0.07	f : 0.07	= : 0.07	g : 0.05	i : 0.05	" : 0.03	! : 0.01	# : 0.01	$ : 0.01	
d : 0.19	e : 0.14	c : 0.12	[ : 0.10	f : 0.07	g : 0.05	! : 0.05	= : 0.05	i : 0.05	a : 0.03	" : 0.03	] : 0.01	# : 0.01	b : 0.01	$ : 0.01	
d : 0.14	c : 0.12	" : 0.10	e : 0.08	! : 0.08	b : 0.07	[ : 0.07	f : 0.07	g : 0.05	= : 0.05	i : 0.05	$ : 0.03	# : 0.01	a : 0.01	
c : 0.14	" : 0.10	d : 0.10	e : 0.08	! : 0.08	g : 0.07	[ : 0.07	f : 0.07	b : 0.05	a : 0.05	= : 0.05	i : 0.05	# : 0.01	$ : 0.01	
! : 0.16	e : 0.14	[ : 0.12	" : 0.12	d : 0.10	c : 0.08	f : 0.05	= : 0.05	g : 0.03	i : 0.03	a : 0.01	# : 0.01	$ : 0.01	b : 0.01	
e : 0.42	! : 0.19	d : 0.07	= : 0.05	" : 0.05	f : 0.03	c : 0.03	[ : 0.03	g : 0.01	$ : 0.01	b : 0.01	i : 0.01	a : 0.01	
e : 0.51	d : 0.23	! : 0.07	= : 0.05	" : 0.03	g : 0.01	c : 0.01	$ : 0.01	f : 0.01	[ : 0.01	
e : 0.49	d : 0.19	c : 0.17	[ : 0.05	= : 0.03	g : 0.01	f : 0.01	
e : 0.48	c : 0.19	d : 0.17	= : 0.03	a : 0.01	g : 0.01	b : 0.01	[ : 0.01	o : 0.01	f : 0.01	
e : 0.39	c : 0.19	d : 0.16	n : 0.08	o : 0.03	= : 0.03	m : 0.01	g : 0.01	b : 0.01	a : 0.01	f : 0.01	
m : 0.58	n : 0.17	e : 0.08	l : 0.07	o : 0.05	c : 0.01	
m : 0.58	l : 0.17	n : 0.17	o : 0.05	
m : 0.58	l : 0.17	n : 0.17	o : 0.05	
m : 0.57	n : 0.17	l : 0.10	o : 0.05	e : 0.05	a : 0.01	f : 0.01	
e : 0.44	c : 0.16	d : 0.16	n : 0.08	o : 0.03	= : 0.03	g : 0.01	b : 0.01	a : 0.01	f : 0.01	
e : 0.49	c : 0.19	d : 0.19	= : 0.03	o : 0.01	g : 0.01	b : 0.01	f : 0.01	
e : 0.51	c : 0.19	d : 0.19	= : 0.03	g : 0.01	] : 0.01	f : 0.01	
e : 0.51	d : 0.21	3 : 0.05	] : 0.05	2 : 0.03	= : 0.03	c : 0.03	g : 0.01	f : 0.01	4 : 0.01	
e : 0.46	3 : 0.16	2 : 0.08	d : 0.05	4 : 0.05	= : 0.05	c : 0.03	f : 0.03	a : 0.01	g : 0.01	] : 0.01	
3 : 0.26	2 : 0.17	] : 0.12	e : 0.07	d : 0.07	4 : 0.07	= : 0.07	c : 0.05	g : 0.03	a : 0.01	f : 0.01	b : 0.01	
3 : 0.21	c : 0.12	2 : 0.12	b : 0.10	d : 0.08	4 : 0.07	= : 0.07	g : 0.05	a : 0.05	f : 0.03	e : 0.01	i : 0.01	] : 0.01	
e : 0.12	3 : 0.12	c : 0.12	b : 0.10	d : 0.10	] : 0.08	= : 0.07	g : 0.05	4 : 0.05	f : 0.05	a : 0.03	i : 0.03	2 : 0.01	
d : 0.21	c : 0.16	e : 0.14	] : 0.08	f : 0.07	= : 0.07	b : 0.05	g : 0.05	i : 0.05	2 : 0.03	a : 0.01	4 : 0.01	3 : 0.01	
e : 0.19	d : 0.19	c : 0.12	g : 0.07	f : 0.07	= : 0.07	] : 0.05	i : 0.05	b : 0.03	2 : 0.03	a : 0.03	3 : 0.03	h : 0.01	
e : 0.24	d : 0.23	c : 0.10	g : 0.07	= : 0.07	f : 0.05	3 : 0.05	i : 0.05	2 : 0.03	] : 0.03	a : 0.01	h : 0.01	
e : 0.28	d : 0.19	3 : 0.10	g : 0.07	c : 0.07	2 : 0.05	f : 0.05	i : 0.05	= : 0.03	] : 0.01	a : 0.01	b : 0.01	h : 0.01	
] : 0.19	e : 0.17	d : 0.08	3 : 0.08	g : 0.07	2 : 0.05	c : 0.05	i : 0.05	: : 0.03	f : 0.03	= : 0.03	b : 0.03	[ : 0.01	a : 0.01	h : 0.01	6 : 0.01	
e : 0.19	d : 0.14	c : 0.10	b : 0.07	f : 0.07	i : 0.07	2 : 0.05	: : 0.05	3 : 0.05	g : 0.05	= : 0.03	4 : 0.01	] : 0.01	h : 0.01	a : 0.01	6 : 0.01	

#score	632.7816325569586
#seq	56
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_transcript_m3_run1.txt

#BEAR
d[bb[bbpppppppbbbb22d	chr6:99847738-99847991(-)$1	253	114	135	12.9084
:ffffffpppppppffffff:	chr10:70545790-70546039(+)$1	249	216	237	12.9198
=======ppppppp=======	chr7:120691858-120692141(+)$1	283	255	276	16.1383
gggggggpppppppggggggg	chr12:76453476-76453688(-)$1	212	115	136	16.0055
:ffffffpppppppffffff:	chr21:34136670-34136931(-)$1	261	155	176	12.9198
:ffffffpppppppffffff:	chr17:30697162-30697484(+)$1	322	171	192	12.9198
d[eeeeepppppppeeeee]d	chr11:82896010-82896353(+)$1	343	240	261	13.7406
iiiiiiipppppppiiiiiii	chr1:245020801-245021004(-)$1	203	85	106	16.1545
hhhhhhhppppppphhhhhhh	chr12:104332017-104332246(+)$1	229	93	114	13.6277
=======ppppppp=======	chr6:56964650-56964932(+)$1	282	242	263	16.1383
!!eeeeepppppppeeeee]d	chr12:57106185-57106436(-)$1	251	167	188	14.0529
gggggggpppppppggggggg	chr1:6283541-6283804(-)$1	263	173	194	16.0055
cc[ddddpppppppdddd]cc	chr14:39650177-39650422(+)$1	245	151	172	13.7499
hhhhhhhppppppphhhhhhh	chr19:39331771-39332092(-)$1	321	257	278	13.6277
hhhhh[apppppppa]hhhhh	chr7:127975784-127976042(-)$1	258	229	250	13.9504
gggggggpppppppggggggg	chr1:78409662-78409945(-)$1	283	74	95	16.0055
cccddddpppppppdddd]cc	chr20:45877231-45877540(-)$1	309	190	211	13.6298
[bb[cccpppppppccc]bb]	chr16:2508557-2508825(+)$1	268	169	190	14.4242
"""ddddpppppppdddd333	chr3:42687399-42687668(+)$1	269	222	243	13.6832
[ffffffpppppppffffffc	chr15:44696816-44697083(+)$1	267	176	197	15.0468
b!!a[bbpppppppbb]a22b	chr20:13756481-13756854(-)$1	373	101	122	13.7287
%ccc[bbpppppppbb]ccc6	chr6:18236587-18236834(-)$1	247	49	70	13.3693
iiiiiiipppppppiiiiiii	chr21:40668423-40668755(-)$1	332	226	247	16.1545
hhhhcccpppppppccc22hh	chr8:135805220-135805471(-)$1	251	16	37	14.1123
[bb[cccpppppppccc]bb2	chr5:137088268-137088571(-)$1	303	61	82	14.1811
gggggggrrrrrrrrrggggg	chr3:160151564-160151830(+)$1	266	127	148	11.6600
cffffffpppppppffffff]	chr1:110042820-110043115(+)$1	295	71	92	14.9788
gg[ddddpppppppdddd22g	chr5:39137601-39137935(-)$1	334	261	282	13.6801
a[eeeeepppppppeeeee]a	chr8:30938502-30938835(+)$1	333	123	144	14.1062
$ffffffpppppppffffff4	chr12:6711509-6711764(-)$1	255	19	40	14.6720
gggggggpppppppggggggg	chr17:43227195-43227482(+)$1	287	28	49	16.0055
fffffbbpppppppbb]ffff	chr8:28921427-28921705(+)$1	278	238	259	14.2259
eeee[bbpppppppbb]eeee	chr17:27001280-27001558(+)$1	278	52	73	13.7063
)ffffffpppppppffffff>	chr7:155574006-155574265(+)$1	259	104	125	14.1581
b!!ddddpppppppdddd]bb	chr21:34931255-34931496(+)$1	241	56	77	13.1177
=======ppppppp=======	chr12:46357788-46358045(-)$1	257	12	33	16.1383
gggggggrrrrrrrrrggggg	chr2:233603214-233603474(+)$1	260	101	122	11.6600
[ffffffpppppppffffffc	chr12:123820869-123821153(-)$1	284	71	92	15.0468
ffff[bbpppppppbb]ffff	chr6:136582090-136582346(-)$1	256	19	40	14.3590
c[bb[bbpppppppbb22bb]	chr20:47839710-47840019(+)$1	309	279	300	13.3141
eeee[bbpppppppbb]eeee	chr20:39713035-39713295(+)$1	260	50	71	13.7063
gggggggpppppppggggggg	chr12:6878986-6879230(+)$1	244	83	104	16.0055
hhhhhhhppppppphhhhhhh	chr15:44107043-44107297(-)$1	254	180	201	13.6277
[ffffffpppppppffffff]	chr2:170668075-170668376(+)$1	301	74	95	15.1854
=======ppppppp=======	chr5:138699444-138699712(+)$1	268	118	139	16.1383
=======ppppppp=======	chr5:65374347-65374642(+)$1	295	259	280	16.1383
!bb[cccpppppppcccbb22	chr18:75687378-75687644(-)$1	266	69	90	13.9470
hhhhhhhppppppphhhhhhh	chr5:158584772-158585100(-)$1	328	150	171	13.6277
gggggggpppppppggggggg	chr5:139871290-139871542(+)$1	252	136	157	16.0055
iiiiiiipppppppiiiiiii	chr12:69663545-69663824(+)$1	279	135	156	16.1545
=======ppppppp=======	chr14:70238175-70238424(+)$1	249	70	91	16.1383
hhhddddpppppppdddd]hh	chr5:135518132-135518409(+)$1	277	125	146	13.3955
gggggggpppppppggggggg	chr10:14886109-14886378(+)$1	269	79	100	16.0055
!ffffffpppppppffffff6	chr1:207968643-207968925(+)$1	282	23	44	14.5963
[ffffffpppppppffffff]	chr7:119359975-119360286(-)$1	311	206	227	15.1854
gggggggrrrrrrrrrggggg	chr7:11143073-11143384(+)$1	311	145	166	11.6600
fffff[apppppppa]fffff	chr4:13338728-13338982(+)$1	254	186	207	14.4774
####cccpppppppccc4444	chr9:72324374-72324659(-)$1	285	206	227	14.1229
h[a[cccpppppppcccahhh	chr2:232326468-232326749(-)$1	281	245	266	14.7469
iiiiiiipppppppiiiiiii	chr6:147665211-147665493(+)$1	282	183	204	16.1545

#otherMatches

#Seq PSSM
GUGAUGUCAAUAAAGCUCUUU	chr6:99847738-99847991(-)$1	253	114	135	12.9084
UGGUGAUAUCUUACAUCAUCU	chr10:70545790-70546039(+)$1	249	216	237	12.9198
ACAGUGUUUUUGGUAUGCUGU	chr7:120691858-120692141(+)$1	283	255	276	16.1383
GUACCAACUUUAUUUUGGUAU	chr12:76453476-76453688(-)$1	212	115	136	16.0055
AUCAUCAGUGAACAUGGUGAA	chr21:34136670-34136931(-)$1	261	155	176	12.9198
CUUCAUUGUAAUAAAAUGAGA	chr17:30697162-30697484(+)$1	322	171	192	12.9198
GAGUGUAAUAUUUAUGCACAC	chr11:82896010-82896353(+)$1	343	240	261	13.7406
CUAUUAUGGAUAAGAUGAUGG	chr1:245020801-245021004(-)$1	203	85	106	16.1545
UCAACAGACUGAAACUGUUGA	chr12:104332017-104332246(+)$1	229	93	114	13.6277
uuauuCGUGGACAGUGAAUGA	chr6:56964650-56964932(+)$1	282	242	263	16.1383
UUGAAAUUUGUACUGUUUCUA	chr12:57106185-57106436(-)$1	251	167	188	14.0529
AUUUGGUUAAUUGUGCCAGAU	chr1:6283541-6283804(-)$1	263	173	194	16.0055
UGUGGCUcaaccucagccuca	chr14:39650177-39650422(+)$1	245	151	172	13.7499
CUGCGCCAUUGCUGGGUGUGG	chr19:39331771-39332092(-)$1	321	257	278	13.6277
UUGCAGAAUUGACAUGUGUAA	chr7:127975784-127976042(-)$1	258	229	250	13.9504
UGAGGUAAAUUGAAUACUUUA	chr1:78409662-78409945(-)$1	283	74	95	16.0055
augguacuuggucugugcaca	chr20:45877231-45877540(-)$1	309	190	211	13.6298
UGUAGACCCGUCCUGUCGAcu	chr16:2508557-2508825(+)$1	268	169	190	14.4242
AGAAUUUAAAAUACAGAUAUG	chr3:42687399-42687668(+)$1	269	222	243	13.6832
CAUUGUCUUUAACUGAUAAUU	chr15:44696816-44697083(+)$1	267	176	197	15.0468
ugaugacgauggaagugaaga	chr20:13756481-13756854(-)$1	373	101	122	13.7287
GUUGAAGAAACCCCCUACAGA	chr6:18236587-18236834(-)$1	247	49	70	13.3693
cacuuugugaauuguaaagug	chr21:40668423-40668755(-)$1	332	226	247	16.1545
gccccuugaggacagagaugg	chr8:135805220-135805471(-)$1	251	16	37	14.1123
AGGGAGGGAGUGAACUUGCUG	chr5:137088268-137088571(-)$1	303	61	82	14.1811
AAACUAGAUCAUGAAACUGGU	chr3:160151564-160151830(+)$1	266	127	148	11.6600
gaaaccugcaguauggguuua	chr1:110042820-110043115(+)$1	295	71	92	14.9788
AGAAUAACAUCUUUUUAUACC	chr5:39137601-39137935(-)$1	334	261	282	13.6801
UGUACUUGGAAAUAAAGUGGA	chr8:30938502-30938835(+)$1	333	123	144	14.1062
AAGUCUAAAGCCUCUGGAUUA	chr12:6711509-6711764(-)$1	255	19	40	14.6720
GGCCUGUACUCCAAGCGGGCC	chr17:43227195-43227482(+)$1	287	28	49	16.0055
GAUCCGAUGUCACUUCUGGGU	chr8:28921427-28921705(+)$1	278	238	259	14.2259
CAGGAUGAGCAAGGCAACUUG	chr17:27001280-27001558(+)$1	278	52	73	13.7063
AAAUGUGUUUGAACUAUAUUG	chr7:155574006-155574265(+)$1	259	104	125	14.1581
acagugcucucucugcacaua	chr21:34931255-34931496(+)$1	241	56	77	13.1177
UUUUAAUUGAUAUUAUUGGGA	chr12:46357788-46358045(-)$1	257	12	33	16.1383
guacaguuuguuuacugcugu	chr2:233603214-233603474(+)$1	260	101	122	11.6600
UGGUCCCUGGAUUUGGGAUUG	chr12:123820869-123821153(-)$1	284	71	92	15.0468
GAACAAUUAUUAAUAUGGUUC	chr6:136582090-136582346(-)$1	256	19	40	14.3590
UGUCAGUAAUGGGGACAGGAG	chr20:47839710-47840019(+)$1	309	279	300	13.3141
CCAUGUUUCUUUGUAGGAUGG	chr20:39713035-39713295(+)$1	260	50	71	13.7063
UCUCCUGGUCCCCACaggagg	chr12:6878986-6879230(+)$1	244	83	104	16.0055
UUUUUCUGGAUAUAAGAAAAA	chr15:44107043-44107297(-)$1	254	180	201	13.6277
UUAACAAAAAUUAAUUGUUAC	chr2:170668075-170668376(+)$1	301	74	95	15.1854
AUUUGCAGAGUACAUGUGGAU	chr5:138699444-138699712(+)$1	268	118	139	16.1383
AAAACAAACCUGUGUUGUUUU	chr5:65374347-65374642(+)$1	295	259	280	16.1383
GGAAGUGGGGGGUGCACUCAG	chr18:75687378-75687644(-)$1	266	69	90	13.9470
ACUUCGCUGGCUGUGUGAAGU	chr5:158584772-158585100(-)$1	328	150	171	13.6277
uguuuaaguacuuauugaaua	chr5:139871290-139871542(+)$1	252	136	157	16.0055
UACAAUAGAUGUAGUGUUGUA	chr12:69663545-69663824(+)$1	279	135	156	16.1545
CUUGCUAAAAAUUCUGGUAAG	chr14:70238175-70238424(+)$1	249	70	91	16.1383
UGUAGAAGCUGAAAUUCUAGC	chr5:135518132-135518409(+)$1	277	125	146	13.3955
uccucauccguaaaaugggga	chr10:14886109-14886378(+)$1	269	79	100	16.0055
AUAGAGACCAGUUUUCUCUGG	chr1:207968643-207968925(+)$1	282	23	44	14.5963
UACAAAUACACAUAAUUUGUU	chr7:119359975-119360286(-)$1	311	206	227	15.1854
UACAUGUAAAUUGUCAACAUG	chr7:11143073-11143384(+)$1	311	145	166	11.6600
aucaaagagaaAUACAUUGAU	chr4:13338728-13338982(+)$1	254	186	207	14.4774
UUAUCUCCUAAAAUGAGUGUU	chr9:72324374-72324659(-)$1	285	206	227	14.1229
AACUCCUGGUAAGAAGGGUGC	chr2:232326468-232326749(-)$1	281	245	266	14.7469
UCUUUUUUUACAUUAAAAGGA	chr6:147665211-147665493(+)$1	282	183	204	16.1545

#DB
(.((.((.......))))..)	chr6:99847738-99847991(-)$1	1	114	135	12.9084
.((((((.......)))))).	chr10:70545790-70546039(+)$1	1	216	237	12.9198
(((((((.......)))))))	chr7:120691858-120692141(+)$1	1	255	276	16.1383
(((((((.......)))))))	chr12:76453476-76453688(-)$1	1	115	136	16.0055
.((((((.......)))))).	chr21:34136670-34136931(-)$1	1	155	176	12.9198
.((((((.......)))))).	chr17:30697162-30697484(+)$1	1	171	192	12.9198
(.(((((.......))))).)	chr11:82896010-82896353(+)$1	1	240	261	13.7406
(((((((.......)))))))	chr1:245020801-245021004(-)$1	1	85	106	16.1545
(((((((.......)))))))	chr12:104332017-104332246(+)$1	1	93	114	13.6277
(((((((.......)))))))	chr6:56964650-56964932(+)$1	1	242	263	16.1383
..(((((.......))))).)	chr12:57106185-57106436(-)$1	1	167	188	14.0529
(((((((.......)))))))	chr1:6283541-6283804(-)$1	1	173	194	16.0055
((.((((.......)))).))	chr14:39650177-39650422(+)$1	1	151	172	13.7499
(((((((.......)))))))	chr19:39331771-39332092(-)$1	1	257	278	13.6277
(((((.(.......).)))))	chr7:127975784-127976042(-)$1	1	229	250	13.9504
(((((((.......)))))))	chr1:78409662-78409945(-)$1	1	74	95	16.0055
(((((((.......)))).))	chr20:45877231-45877540(-)$1	1	190	211	13.6298
.((.(((.......))).)).	chr16:2508557-2508825(+)$1	1	169	190	14.4242
...((((.......))))...	chr3:42687399-42687668(+)$1	1	222	243	13.6832
.((((((.......)))))))	chr15:44696816-44697083(+)$1	1	176	197	15.0468
(..(.((.......)).)..)	chr20:13756481-13756854(-)$1	1	101	122	13.7287
.(((.((.......)).))).	chr6:18236587-18236834(-)$1	1	49	70	13.3693
(((((((.......)))))))	chr21:40668423-40668755(-)$1	1	226	247	16.1545
(((((((.......)))..))	chr8:135805220-135805471(-)$1	1	16	37	14.1123
.((.(((.......))).)).	chr5:137088268-137088571(-)$1	1	61	82	14.1811
(((((((.........)))))	chr3:160151564-160151830(+)$1	1	127	148	11.6600
(((((((.......)))))).	chr1:110042820-110043115(+)$1	1	71	92	14.9788
((.((((.......))))..)	chr5:39137601-39137935(-)$1	1	261	282	13.6801
(.(((((.......))))).)	chr8:30938502-30938835(+)$1	1	123	144	14.1062
.((((((.......)))))).	chr12:6711509-6711764(-)$1	1	19	40	14.6720
(((((((.......)))))))	chr17:43227195-43227482(+)$1	1	28	49	16.0055
(((((((.......)).))))	chr8:28921427-28921705(+)$1	1	238	259	14.2259
((((.((.......)).))))	chr17:27001280-27001558(+)$1	1	52	73	13.7063
.((((((.......)))))).	chr7:155574006-155574265(+)$1	1	104	125	14.1581
(..((((.......)))).))	chr21:34931255-34931496(+)$1	1	56	77	13.1177
(((((((.......)))))))	chr12:46357788-46358045(-)$1	1	12	33	16.1383
(((((((.........)))))	chr2:233603214-233603474(+)$1	1	101	122	11.6600
.((((((.......)))))))	chr12:123820869-123821153(-)$1	1	71	92	15.0468
((((.((.......)).))))	chr6:136582090-136582346(-)$1	1	19	40	14.3590
(.((.((.......))..)).	chr20:47839710-47840019(+)$1	1	279	300	13.3141
((((.((.......)).))))	chr20:39713035-39713295(+)$1	1	50	71	13.7063
(((((((.......)))))))	chr12:6878986-6879230(+)$1	1	83	104	16.0055
(((((((.......)))))))	chr15:44107043-44107297(-)$1	1	180	201	13.6277
.((((((.......)))))).	chr2:170668075-170668376(+)$1	1	74	95	15.1854
(((((((.......)))))))	chr5:138699444-138699712(+)$1	1	118	139	16.1383
(((((((.......)))))))	chr5:65374347-65374642(+)$1	1	259	280	16.1383
.((.(((.......)))))..	chr18:75687378-75687644(-)$1	1	69	90	13.9470
(((((((.......)))))))	chr5:158584772-158585100(-)$1	1	150	171	13.6277
(((((((.......)))))))	chr5:139871290-139871542(+)$1	1	136	157	16.0055
(((((((.......)))))))	chr12:69663545-69663824(+)$1	1	135	156	16.1545
(((((((.......)))))))	chr14:70238175-70238424(+)$1	1	70	91	16.1383
(((((((.......)))).))	chr5:135518132-135518409(+)$1	1	125	146	13.3955
(((((((.......)))))))	chr10:14886109-14886378(+)$1	1	79	100	16.0055
.((((((.......)))))).	chr1:207968643-207968925(+)$1	1	23	44	14.5963
.((((((.......)))))).	chr7:119359975-119360286(-)$1	1	206	227	15.1854
(((((((.........)))))	chr7:11143073-11143384(+)$1	1	145	166	11.6600
(((((.(.......).)))))	chr4:13338728-13338982(+)$1	1	186	207	14.4774
....(((.......)))....	chr9:72324374-72324659(-)$1	1	206	227	14.1229
(.(.(((.......)))))))	chr2:232326468-232326749(-)$1	1	245	266	14.7469
(((((((.......)))))))	chr6:147665211-147665493(+)$1	1	183	204	16.1545

#PSSM
g : 0.18	h : 0.13	= : 0.09	[ : 0.09	i : 0.06	c : 0.06	: : 0.05	! : 0.05	f : 0.05	d : 0.03	b : 0.03	e : 0.03	" : 0.01	% : 0.01	a : 0.01	$ : 0.01	) : 0.01	# : 0.01	
f : 0.23	g : 0.18	h : 0.11	= : 0.09	[ : 0.08	i : 0.06	! : 0.05	c : 0.05	b : 0.05	e : 0.03	" : 0.01	# : 0.01	
f : 0.23	g : 0.16	h : 0.11	= : 0.09	b : 0.08	e : 0.08	i : 0.06	[ : 0.03	c : 0.03	! : 0.03	" : 0.01	# : 0.01	a : 0.01	
f : 0.23	g : 0.16	= : 0.09	h : 0.09	d : 0.09	e : 0.08	i : 0.06	[ : 0.06	b : 0.03	a : 0.01	c : 0.01	# : 0.01	
f : 0.21	g : 0.16	[ : 0.11	= : 0.09	d : 0.09	c : 0.09	h : 0.08	i : 0.06	e : 0.05	
f : 0.18	g : 0.16	b : 0.13	= : 0.09	d : 0.09	c : 0.09	i : 0.06	h : 0.06	e : 0.05	[ : 0.03	
f : 0.18	g : 0.16	b : 0.13	= : 0.09	d : 0.09	c : 0.09	i : 0.06	h : 0.06	e : 0.05	a : 0.03	
p : 0.95	r : 0.05	
p : 0.95	r : 0.05	
p : 0.95	r : 0.05	
p : 0.95	r : 0.05	
p : 0.95	r : 0.05	
p : 0.95	r : 0.05	
p : 0.95	r : 0.05	
f : 0.18	b : 0.13	g : 0.11	= : 0.09	d : 0.09	c : 0.09	i : 0.06	h : 0.06	e : 0.05	r : 0.05	a : 0.03	
f : 0.18	b : 0.13	g : 0.11	= : 0.09	d : 0.09	c : 0.09	i : 0.06	h : 0.06	e : 0.05	r : 0.05	] : 0.03	
f : 0.19	g : 0.16	= : 0.09	d : 0.09	c : 0.09	] : 0.09	h : 0.08	i : 0.06	e : 0.05	b : 0.01	2 : 0.01	
f : 0.23	g : 0.16	= : 0.09	d : 0.09	e : 0.08	h : 0.08	i : 0.06	b : 0.03	] : 0.03	a : 0.03	2 : 0.03	c : 0.01	4 : 0.01	
f : 0.23	g : 0.16	= : 0.09	h : 0.09	e : 0.08	2 : 0.06	i : 0.06	] : 0.06	b : 0.06	3 : 0.01	c : 0.01	4 : 0.01	
f : 0.23	g : 0.16	h : 0.13	= : 0.09	2 : 0.06	i : 0.06	b : 0.06	] : 0.05	c : 0.05	e : 0.03	3 : 0.01	4 : 0.01	
g : 0.18	h : 0.13	= : 0.09	] : 0.08	i : 0.06	c : 0.06	d : 0.05	: : 0.05	f : 0.05	b : 0.03	6 : 0.03	2 : 0.03	4 : 0.03	e : 0.03	3 : 0.01	a : 0.01	> : 0.01	

#score	867.0447260063312
#seq	60
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_transcript_m2_run2.txt

#BEAR
bb333gggggggddddddddoooooodddd>>>>>>>>>>	chr6:20403151-20403424(+)$1	273	208	248	12.1527
ddd[ccc[ddddaccc[cccooooooccc22ccc]a]ddd	chr7:127672562-127672816(+)$1	254	85	125	13.7938
[===========[a!!ccc"""iiiiiiiii[ffffff##	chr21:45881080-45881307(+)$1	227	111	151	9.3217
:dddd[ggggggg"""ddddrrrrrrrrrddddggggggg	chr20:60932772-60933022(-)$1	250	82	122	11.1524
!ggggggg"""ffffff[a[aooooooa]a]ffffffggg	chr2:159314539-159314796(+)$1	257	92	132	12.7094
####ffffffccc[ddddrrrrrrrrrdddd333ccc]ff	chr20:62370576-62370836(+)$1	260	204	244	11.0443
eeee!!dddd"""bb"""bboooooobb333bb333dddd	chr21:46858742-46859004(+)$1	262	152	192	13.6976
ffff[bb[ccc!!ccc[ddddnnnnndddd]ccc22ccc3	chr6:131383583-131383844(-)$1	261	196	236	12.8768
B============[ddddqqqqqqqqdddd==========	chr22:50625565-50625817(+)$1	252	40	80	10.1512
!ddddggggggg[bb[ddddoooooodddd]bbggggggg	chr11:2005174-2005447(+)$1	273	134	174	16.2364
[eeeee"""ccc[a[eeeeennnnneeeee]accc4444e	chr9:136856873-136857105(-)$1	232	129	169	12.6847
c22bbggggggg####ccc[annnnna]ccc22ggggggg	chr7:35841240-35841560(+)$1	320	113	153	11.8748
fff[bb[eeeee"""a[ddddnnnnndddd]a333eeeee	chr2:231577502-231577816(+)$1	314	75	115	13.6892
ddddddddffffff!!ddddnnnnndddd4444ffffff]	chr9:137256828-137257092(+)$1	264	188	228	11.9518
:ggggggg[ccc"""eeeee[ccclllccc]eeeee]ccc	chr10:31608270-31608495(+)$1	225	65	105	9.7882
f[ccc[a[ccc[gggggggnnnnnggggggg22ccc]a]c	chr7:27153319-27153584(-)$1	265	28	68	10.2836
f[a!!ffffff!!bb[cccccclllccc]ccc22bb22ff	chr17:76165257-76165545(+)$1	288	199	239	11.6155
eeeee[eeeeea[bb[ddddoooooodddd]bb]a]eeee	chr20:35974127-35974393(+)$1	266	150	190	16.2466
eeeee[a!!a[bb[bbddddoooooodddd]bb]bb]a22	chr1:44883782-44884120(+)$1	338	86	126	14.6375
===="""==========cccooooooccc22=========	chr1:205417415-205417656(-)$1	241	151	191	15.8904
bb[dddd!!bb!!bb"""aooooooa333bb333bb22dd	chr8:142412048-142412337(+)$1	289	225	265	12.4881
fff[eeeee[a"""dddd[annnnna]ddddaeeeee]ff	chr7:2680970-2681231(+)$1	261	105	145	11.9862
edddd]ffffffccc[ddddooooooddddccca[ggggg	chr16:9056522-9056793(-)$1	271	72	112	14.2117
eee[ccc[dddd[bb[a[bboooooobb]a]bb]dddd]c	chr2:25563772-25564039(-)$1	267	21	61	13.5157
ffff[a[ccc[dddd[ddddccclllccc22dddd]dddd	chr16:88556984-88557237(+)$1	253	131	171	11.0049
hhhhhh"""ccc!!ffffffooooooffffffccc22hhh	chr8:613263-613529(-)$1	266	36	76	11.2826
dddddddd!!ccc"""ddddoooooodddd7777777ccc	chr1:116916266-116916540(+)$1	274	10	50	12.0344
eeeeccc[eeeee[a[ddddllldddd]a]eeeee]ccc]	chr19:35491446-35491737(+)$1	291	136	176	11.2832
i[bb[eeeeeeeeee[addddnnnnndddd4444a]eeee	chr8:21917400-21917705(+)$1	305	167	207	12.9180
eeeee"""ccc!!bb[eeeeeooooooeeeee]bb22ccc	chr9:127244717-127244968(-)$1	251	147	187	13.2757
iidddd!!dddd[bb[ddddllldddd]bb]dddd22ddd	chr10:126605941-126606195(+)$1	254	50	90	10.9656
[a!!dddd[bb[ccc[ddddooooooddddccc]bbdddd	chr9:136818754-136819024(-)$1	270	217	257	14.5937
eee####eeeee[a[dddd[aooooooa]dddd]a]eeee	chr12:58149062-58149371(-)$1	309	237	277	13.8835
[iiiiiiiii[a[bb[avvvvvvvvvvvvva]bba]iiii	chr9:137267462-137267709(+)$1	247	176	216	9.7653
e[ggggggg"""ccc$$$$$ccclllccc22cccgggggg	chr2:10443551-10443816(+)$1	265	211	251	10.7566
ee[ffffff[bb[bb!!cccooooooccc22bbbbfffff	chr9:138371604-138371860(+)$1	256	144	184	13.1467
iiiiiiii[dddd[ccc[ccclllccc]ccc22ddddiii	chr8:71314691-71314933(-)$1	242	112	152	11.1903
========dddd"""eeeeeooooooeeeee333dddd55	chr6:36164123-36164370(-)$1	247	72	112	13.0746
[eeeee[eeeee[bb[cccooooooccc]bb]eeeeeeee	chr20:62371472-62371721(+)$1	249	36	76	12.9968
!a[dddd[ffffffa[cccooooooccc]a22ffffffdd	chr21:27541675-27541950(-)$1	275	133	173	12.7153
e[cccccc!!eeeee[ddddccclllccc333ddddeeee	chr21:46886635-46886906(+)$1	271	119	159	11.9574
=====!!bb!!dddd[ddddoooooodddd]dddd]bb]=	chr19:1844543-1844785(-)$1	242	144	184	14.6167
ccc[ccc!!ddddeeeee[aooooooa]eeeee22dddd2	chr12:125049906-125050165(-)$1	259	95	135	12.0837
eeeee[eeeeeccc"""cccoooooocccccc]eeeee55	chr19:1169294-1169559(-)$1	265	160	200	12.8277
e[bb!!eeeee!!gggggggoooooogggggggeeeee22	chr9:137251729-137252028(+)$1	299	71	111	12.8393
[a!!dddd"""bb[a[ddddoooooodddd]a]bb333dd	chr21:46851366-46851623(+)$1	257	141	181	15.6576
d[ccc[a!!ccc[bb[eeeeellleeeee]bb22ccc22a	chr17:79075718-79076047(+)$1	329	201	241	11.5533
c[a[eeeee[gggggggddddnnnnndddd]ggggggg44	chr19:50181314-50181575(+)$1	261	39	79	13.3469
"""cccdddd[a!!bb[ddddnnnnndddd]bb22a22dd	chr11:2157212-2157448(-)$1	236	5	45	12.7476
:eeeeebb[ccc[cccddddnnnnndddd]ccc]ccc22b	chr16:68001653-68001899(-)$1	246	102	142	11.4573
bb[bb!!ccc$$$$$a[ddddnnnnndddd]a22ccc22b	chr6:41529881-41530153(+)$1	272	135	175	12.0175
dddd[ggggggg[dddd[cccmmmmcccddddgggggggd	chr19:4064301-4064550(-)$1	249	168	208	10.6291

#otherMatches

#Seq PSSM
CGGAGCGCAGGGGAUCGGCGGGGCUGCGCUUGACACAUUU	chr6:20403151-20403424(+)$1	273	208	248	12.1527
cggcccgcggcggggcUGCUGCAUUUGGCCUGCCUCUCGC	chr7:127672562-127672816(+)$1	254	85	125	13.7938
GUGCUGGCAGCUGUGGGUGAGUGAGGAGGCUCCUCUCAUG	chr21:45881080-45881307(+)$1	227	111	151	9.3217
UGCAGUGGUUGGGGUCCCUGAAUCCACCCCAGGCCCAGCU	chr20:60932772-60933022(-)$1	250	82	122	11.1524
GCGGUAGUCAGGUGUGUGUGUACAGCGGGGGACGCGCGCU	chr2:159314539-159314796(+)$1	257	92	132	12.7094
UGCUGCCGGGAAGCCCGCCAAGCAAUCGCGGCCCCUUCCC	chr20:62370576-62370836(+)$1	260	204	244	11.0443
UGCUUAGGGACUUGCAUGGCAAUUUGGCAGGGCCGUUCCC	chr21:46858742-46859004(+)$1	262	152	192	13.6976
GGAGCUGCGGAGAGGGACGCGUGUUUCGUGCUCCGAUCCU	chr6:131383583-131383844(-)$1	261	196	236	12.8768
CUGUGGGGCCCCCUGCAUGGUGGUCAGUGUGGGGGCUCUG	chr22:50625565-50625817(+)$1	252	40	80	10.1512
GCCUGCCUGAGGGCCGGGAGCUUGGACUUCAGGCCUCAGG	chr11:2005174-2005447(+)$1	273	134	174	16.2364
cgccgccgcccgcgggcACUGCUCUGGUGCGCCGGUUCCG	chr9:136856873-136857105(-)$1	232	129	169	12.6847
UGAACGCUCGGGCGAGGGUGCUGUGUGGGCCAAcccgggc	chr7:35841240-35841560(+)$1	320	113	153	11.8748
GGCUCGGGCCGCAAGCGGGGCGAGGGGUUCGGGGAGCGGC	chr2:231577502-231577816(+)$1	314	75	115	13.6892
CGCUGGGCCCGGGAAAGCCCCUCGUGGGCCAUCUCCCGGA	chr9:137256828-137257092(+)$1	264	188	228	11.9518
aaguggagugggAAAGUAGAAAGUAGUGCUCUCUGCCCCC	chr10:31608270-31608495(+)$1	225	65	105	9.7882
GGGCCGCGGCUGCUGCCCUCgggaagggcagggggcgggg	chr7:27153319-27153584(-)$1	265	28	68	10.2836
GGCCUGGAGCUUCUGAGGUCCUCCAGGGCGCCCACACCAG	chr17:76165257-76165545(+)$1	288	199	239	11.6155
GGCGGAGUGGGAGGCGGGGCUUCUGUGCCCGGUGUCCCCA	chr20:35974127-35974393(+)$1	266	150	190	16.2466
GGGACACAGCGCGGGCGUGGGGAUGGCCACUGCGCGGGGA	chr1:44883782-44884120(+)$1	338	86	126	14.6375
UUUUCAUUCCUAUGUGAUUGCUGUCCCAAACUCAUGUAGG	chr1:205417415-205417656(-)$1	241	151	191	15.8904
AGGUGUGGGUGGAGCAGGUGAAGGGAGAGGUGGGCAGGCA	chr8:142412048-142412337(+)$1	289	225	265	12.4881
GGCAGGGGGACUGAGGCUGCAGGAGGGGGUCGCCCCCAGC	chr7:2680970-2681231(+)$1	261	105	145	11.9862
CCCCGUUCUGGGGCGUCCGGUUGGAUCUGGUGUGGCUGGG	chr16:9056522-9056793(-)$1	271	72	112	14.2117
gggugauggcggggccgggccggggagcgccgcgccgcgA	chr2:25563772-25564039(-)$1	267	21	61	13.5157
AGCCAGGAGGAUGACCCGGCCCCAUGGGGAAGCUGAGUUA	chr16:88556984-88557237(+)$1	253	131	171	11.0049
GUGUGGGUGCCAAUCUCUCUUCCUCUAGGGAGUGGAACUG	chr8:613263-613529(-)$1	266	36	76	11.2826
AGCCGCGCGGCUUAAAAGACGACGCAGUUUGGAAAUGGAG	chr1:116916266-116916540(+)$1	274	10	50	12.0344
GUGGGGCGCGGACGCAGGGCAGGGCCCGGGGUCUGGGUCG	chr19:35491446-35491737(+)$1	291	136	176	11.2832
GCGAGCGGCUGGCUGGCGUCCGACCAGGGCCAGGGGCAGC	chr8:21917400-21917705(+)$1	305	167	207	12.9180
UGGCACUUGCCUGCUGCUUGGAGUGCCCCAAGGAGGUGGC	chr9:127244717-127244968(-)$1	251	147	187	13.2757
cgccgcUGUCGGCGCUUCCAUCUUGGGCGCUCCGGUUGCG	chr10:126605941-126606195(+)$1	254	50	90	10.9656
GUCCCCACUCAAGGGUGUCUGAAGCUGGGCCCCAUGGUGG	chr9:136818754-136819024(-)$1	270	217	257	14.5937
ccgagcgggcuggcggcccgggggcggcggggugggcggc	chr12:58149062-58149371(-)$1	309	237	277	13.8835
GAGCAUUCUCGGUGUGAGAGUUUGUGUUAGUGGCUGGGGG	chr9:137267462-137267709(+)$1	247	176	216	9.7653
CUCGCGGGCAGGCUGGGCAGCCCUCAGGGAACAGGUCCGU	chr2:10443551-10443816(+)$1	265	211	251	10.7566
cgagggcggagcgcgcuggcccugcagccuccggcccgcc	chr9:138371604-138371860(+)$1	256	144	184	13.1467
GAGGGGGCCGGGGUCGUCGCUGCCGGCUGCGCUCCCCGCC	chr8:71314691-71314933(-)$1	242	112	152	11.1903
ccgccgccgccgccACGGGGCACCAUCCCCGGCUCGGCCU	chr6:36164123-36164370(-)$1	247	72	112	13.0746
gguccgcgcguguccgugggucccgccggggcugcgccgg	chr20:62371472-62371721(+)$1	249	36	76	12.9968
AGGGCAGUGGCGGAUGGUGGGGAGGCACGGGCUCUGUCCU	chr21:27541675-27541950(-)$1	275	133	173	12.7153
GCGGGGGCAGCUGGGUGGCUGGCACGGCCUCUGGCCCCCA	chr21:46886635-46886906(+)$1	271	119	159	11.9574
GCUCCAGGCGACUCUCCAGAACUGCAUCUGUAGAGGGCAG	chr19:1844543-1844785(-)$1	242	144	184	14.6167
CUUUUCCCACUCCCCUCUGCUUGUCCGGAGAGGAUGGAGA	chr12:125049906-125050165(-)$1	259	95	135	12.0837
CCGUGAGAGCUCAGCAUGGCAGCGUGGCCCUGAAGCUCAG	chr19:1169294-1169559(-)$1	265	160	200	12.8277
UAGGAACAGGGAAGCUUCUGGAGCCGCGGGGGUCCCUGGG	chr9:137251729-137252028(+)$1	299	71	111	12.8393
AGGCCAGGCCUAGACGGCCCACAGGAGGGUGGACUCAUUC	chr21:46851366-46851623(+)$1	257	141	181	15.6576
CGUGUGUGGAAGAGGCCUGUGUCCCACAGACCCACUUAGA	chr17:79075718-79076047(+)$1	329	201	241	11.5533
GUGUGUGGGAGGGACAUCUUUUUCAUGGGGCGUGUCCUGA	chr19:50181314-50181575(+)$1	261	39	79	13.3469
AAACAAGGUUUCUAGAGCAUGGGUGGCGUGGUUGUGUUAA	chr11:2157212-2157448(-)$1	236	5	45	12.7476
GGGACAGUGGGCCUCAGUGAagcacucacauggagccgga	chr16:68001653-68001899(-)$1	246	102	142	11.4573
GUAAAGACCCUGGAGGGGGCAGAGCAUGCCACAUGGGAAU	chr6:41529881-41530153(+)$1	272	135	175	12.0175
GGGCCUCUGUUUACCACCAGCCAUCGCUGUGGAGACAGAG	chr19:4064301-4064550(-)$1	249	168	208	10.6291

#DB
))...)))))))((((((((......))))..........	chr6:20403151-20403424(+)$1	1	208	248	12.1527
(((.(((.((((((((.(((......)))..))).).)))	chr7:127672562-127672816(+)$1	1	85	125	13.7938
.(((((((((((.(..(((...(((((((((.((((((..	chr21:45881080-45881307(+)$1	1	111	151	9.3217
.((((.(((((((...((((.........)))))))))))	chr20:60932772-60933022(-)$1	1	82	122	11.1524
.(((((((...((((((.(.(......).).)))))))))	chr2:159314539-159314796(+)$1	1	92	132	12.7094
....(((((((((.((((.........))))...))).))	chr20:62370576-62370836(+)$1	1	204	244	11.0443
((((..((((...((...((......))...))...))))	chr21:46858742-46859004(+)$1	1	152	192	13.6976
((((.((.(((..(((.((((.....)))).)))..))).	chr6:131383583-131383844(-)$1	1	196	236	12.8768
(((((((((((((.((((........))))))))))))))	chr22:50625565-50625817(+)$1	1	40	80	10.1512
.(((((((((((.((.((((......)))).)))))))))	chr11:2005174-2005447(+)$1	1	134	174	16.2364
.(((((...(((.(.(((((.....))))).))))....)	chr9:136856873-136857105(-)$1	1	129	169	12.6847
)..))(((((((....(((.(.....).)))..)))))))	chr7:35841240-35841560(+)$1	1	113	153	11.8748
(((.((.(((((...(.((((.....)))).)...)))))	chr2:231577502-231577816(+)$1	1	75	115	13.6892
))))((((((((((..((((.....))))....)))))).	chr9:137256828-137257092(+)$1	1	188	228	11.9518
.(((((((.(((...(((((.(((...))).))))).)))	chr10:31608270-31608495(+)$1	1	65	105	9.7882
(.(((.(.(((.(((((((.....)))))))..))).).)	chr7:27153319-27153584(-)$1	1	28	68	10.2836
(.(..((((((..((.((((((...))).)))..))..))	chr17:76165257-76165545(+)$1	1	199	239	11.6155
(((((.((((((.((.((((......)))).)).).))))	chr20:35974127-35974393(+)$1	1	150	190	16.2466
(((((.(..(.((.((((((......)))).)).)).)..	chr1:44883782-44884120(+)$1	1	86	126	14.6375
((((...(((((((((((((......)))..)))))))))	chr1:205417415-205417656(-)$1	1	151	191	15.8904
((.((((..((..((...(......)...))...))..))	chr8:142412048-142412337(+)$1	1	225	265	12.4881
(((.(((((.(...((((.(.....).)))))))))).))	chr7:2680970-2681231(+)$1	1	105	145	11.9862
))))).))))))(((.((((......)))))))(.(((((	chr16:9056522-9056793(-)$1	1	72	112	14.2117
(((.(((.((((.((.(.((......)).).)).)))).)	chr2:25563772-25564039(-)$1	1	21	61	13.5157
((((.(.(((.((((.(((((((...)))..)))).))))	chr16:88556984-88557237(+)$1	1	131	171	11.0049
((((((...(((..((((((......)))))))))..)))	chr8:613263-613529(-)$1	1	36	76	11.2826
))))((((..(((...((((......)))).......)))	chr1:116916266-116916540(+)$1	1	10	50	12.0344
(((((((.(((((.(.((((...)))).).))))).))).	chr19:35491446-35491737(+)$1	1	136	176	11.2832
(.((.((((((((((.(((((.....))))....).))))	chr8:21917400-21917705(+)$1	1	167	207	12.9180
(((((...(((..((.(((((......))))).))..)))	chr9:127244717-127244968(-)$1	1	147	187	13.2757
((((((..((((.((.((((...)))).)).))))..)))	chr10:126605941-126606195(+)$1	1	50	90	10.9656
.(..((((.((.(((.((((......))))))).))))))	chr9:136818754-136819024(-)$1	1	217	257	14.5937
(((....(((((.(.((((.(......).)))).).))))	chr12:58149062-58149371(-)$1	1	237	277	13.8835
.(((((((((.(.((.(.............).))).))))	chr9:137267462-137267709(+)$1	1	176	216	9.7653
(.(((((((...(((.....(((...)))..)))))))))	chr2:10443551-10443816(+)$1	1	211	251	10.7566
((.((((((.((.((..(((......)))..)))))))))	chr9:138371604-138371860(+)$1	1	144	184	13.1467
((((((((.((((.(((.(((...))).)))..)))))))	chr8:71314691-71314933(-)$1	1	112	152	11.1903
((((((((((((...(((((......)))))...))))..	chr6:36164123-36164370(-)$1	1	72	112	13.0746
.(((((.(((((.((.(((......))).)).))))))))	chr20:62371472-62371721(+)$1	1	36	76	12.9968
.(.((((.(((((((.(((......))).)..))))))))	chr21:27541675-27541950(-)$1	1	133	173	12.7153
(.((((((..(((((.(((((((...)))...))))))))	chr21:46886635-46886906(+)$1	1	119	159	11.9574
(((((..((..((((.((((......)))).)))).)).)	chr19:1844543-1844785(-)$1	1	144	184	14.6167
(((.(((..(((((((((.(......).)))))..)))).	chr12:125049906-125050165(-)$1	1	95	135	12.0837
(((((.((((((((...(((......)))))).)))))..	chr19:1169294-1169559(-)$1	1	160	200	12.8277
(.((..(((((..(((((((......))))))))))))..	chr9:137251729-137252028(+)$1	1	71	111	12.8393
.(..((((...((.(.((((......)))).).))...))	chr21:46851366-46851623(+)$1	1	141	181	15.6576
(.(((.(..(((.((.(((((...))))).))..)))..)	chr17:79075718-79076047(+)$1	1	201	241	11.5533
(.(.(((((.(((((((((((.....)))).)))))))..	chr19:50181314-50181575(+)$1	1	39	79	13.3469
...(((((((.(..((.((((.....)))).))..)..))	chr11:2157212-2157448(-)$1	1	5	45	12.7476
.(((((((.(((.(((((((.....)))).))).)))..)	chr16:68001653-68001899(-)$1	1	102	142	11.4573
((.((..(((.....(.((((.....)))).)..)))..)	chr6:41529881-41530153(+)$1	1	135	175	12.0175
((((.(((((((.((((.(((....)))))))))))))))	chr19:4064301-4064550(-)$1	1	168	208	10.6291

#PSSM
e : 0.24	[ : 0.11	f : 0.11	d : 0.09	b : 0.05	: : 0.05	! : 0.05	c : 0.05	= : 0.05	i : 0.05	# : 0.01	B : 0.01	h : 0.01	" : 0.01	
e : 0.23	[ : 0.15	d : 0.13	= : 0.09	f : 0.07	b : 0.05	i : 0.05	a : 0.05	g : 0.03	# : 0.01	2 : 0.01	h : 0.01	c : 0.01	" : 0.01	
e : 0.21	d : 0.15	= : 0.09	f : 0.07	c : 0.07	[ : 0.07	g : 0.05	a : 0.03	b : 0.03	! : 0.03	i : 0.03	3 : 0.01	# : 0.01	2 : 0.01	h : 0.01	" : 0.01	
d : 0.17	e : 0.17	[ : 0.11	= : 0.09	b : 0.07	c : 0.07	g : 0.05	f : 0.05	! : 0.05	# : 0.03	i : 0.03	3 : 0.01	h : 0.01	
d : 0.19	e : 0.17	c : 0.15	= : 0.07	[ : 0.07	g : 0.05	! : 0.05	b : 0.05	f : 0.03	i : 0.03	3 : 0.01	" : 0.01	h : 0.01	# : 0.01	
g : 0.13	d : 0.13	c : 0.11	[ : 0.11	e : 0.11	! : 0.07	= : 0.05	f : 0.05	b : 0.03	" : 0.03	i : 0.03	] : 0.01	a : 0.01	h : 0.01	# : 0.01	
g : 0.15	d : 0.15	e : 0.11	c : 0.09	f : 0.07	" : 0.07	= : 0.05	[ : 0.05	a : 0.05	! : 0.05	b : 0.03	i : 0.03	# : 0.01	
e : 0.17	g : 0.15	[ : 0.11	d : 0.11	! : 0.09	= : 0.07	f : 0.07	" : 0.05	c : 0.05	i : 0.03	b : 0.03	
e : 0.19	g : 0.11	d : 0.11	f : 0.11	! : 0.11	c : 0.09	" : 0.07	[ : 0.07	= : 0.05	i : 0.01	b : 0.01	
c : 0.19	d : 0.15	e : 0.15	g : 0.09	f : 0.09	= : 0.05	" : 0.05	[ : 0.05	! : 0.05	b : 0.03	a : 0.01	i : 0.01	
c : 0.19	e : 0.17	g : 0.11	d : 0.11	" : 0.07	f : 0.07	[ : 0.07	= : 0.05	b : 0.05	a : 0.01	! : 0.01	$ : 0.01	
d : 0.15	c : 0.15	g : 0.11	e : 0.11	! : 0.09	f : 0.07	= : 0.05	" : 0.05	a : 0.05	b : 0.05	[ : 0.03	$ : 0.01	
[ : 0.24	! : 0.13	c : 0.11	d : 0.09	" : 0.09	g : 0.05	f : 0.05	e : 0.05	= : 0.03	b : 0.03	a : 0.01	# : 0.01	$ : 0.01	
b : 0.23	c : 0.13	" : 0.11	[ : 0.11	d : 0.07	a : 0.05	f : 0.05	g : 0.05	e : 0.05	! : 0.03	# : 0.01	= : 0.01	$ : 0.01	
b : 0.26	d : 0.13	c : 0.13	" : 0.11	g : 0.05	a : 0.05	e : 0.05	! : 0.03	f : 0.03	[ : 0.03	# : 0.01	= : 0.01	$ : 0.01	
[ : 0.34	d : 0.11	" : 0.09	c : 0.07	e : 0.07	! : 0.05	g : 0.05	f : 0.03	a : 0.03	b : 0.03	# : 0.01	= : 0.01	$ : 0.01	
d : 0.40	c : 0.11	e : 0.11	[ : 0.09	" : 0.05	g : 0.05	a : 0.05	f : 0.03	= : 0.01	$ : 0.01	! : 0.01	
d : 0.49	c : 0.17	e : 0.11	[ : 0.07	" : 0.03	g : 0.03	f : 0.01	v : 0.01	$ : 0.01	
d : 0.44	c : 0.21	e : 0.09	a : 0.03	b : 0.03	g : 0.03	[ : 0.03	r : 0.01	q : 0.01	f : 0.01	v : 0.01	$ : 0.01	
d : 0.42	c : 0.13	e : 0.09	[ : 0.05	o : 0.05	b : 0.03	a : 0.03	" : 0.01	r : 0.01	q : 0.01	n : 0.01	f : 0.01	v : 0.01	$ : 0.01	g : 0.01	
o : 0.42	d : 0.11	c : 0.11	n : 0.09	a : 0.05	r : 0.03	l : 0.03	e : 0.03	" : 0.01	q : 0.01	[ : 0.01	v : 0.01	
o : 0.48	n : 0.23	c : 0.09	l : 0.07	r : 0.03	" : 0.01	q : 0.01	v : 0.01	m : 0.01	
o : 0.48	n : 0.23	l : 0.09	c : 0.07	r : 0.03	i : 0.01	q : 0.01	v : 0.01	m : 0.01	
o : 0.48	n : 0.23	l : 0.11	r : 0.03	d : 0.03	i : 0.01	q : 0.01	c : 0.01	v : 0.01	m : 0.01	
o : 0.48	n : 0.21	l : 0.09	r : 0.03	d : 0.03	i : 0.01	q : 0.01	g : 0.01	v : 0.01	c : 0.01	e : 0.01	m : 0.01	
o : 0.42	n : 0.13	c : 0.09	d : 0.07	l : 0.07	r : 0.03	e : 0.03	a : 0.03	i : 0.01	q : 0.01	g : 0.01	v : 0.01	
d : 0.38	c : 0.23	o : 0.05	e : 0.05	r : 0.03	b : 0.03	a : 0.03	g : 0.03	i : 0.01	l : 0.01	3 : 0.01	] : 0.01	f : 0.01	v : 0.01	
d : 0.38	c : 0.23	] : 0.09	e : 0.07	a : 0.03	b : 0.03	g : 0.03	i : 0.01	r : 0.01	3 : 0.01	f : 0.01	v : 0.01	
d : 0.40	c : 0.19	] : 0.11	e : 0.09	3 : 0.03	g : 0.03	i : 0.01	r : 0.01	f : 0.01	a : 0.01	b : 0.01	v : 0.01	
d : 0.40	2 : 0.09	c : 0.09	e : 0.07	a : 0.05	b : 0.05	] : 0.05	3 : 0.03	g : 0.03	i : 0.01	4 : 0.01	f : 0.01	v : 0.01	
] : 0.28	c : 0.13	2 : 0.11	d : 0.09	e : 0.07	b : 0.05	3 : 0.03	4 : 0.03	g : 0.03	> : 0.01	i : 0.01	= : 0.01	f : 0.01	7 : 0.01	a : 0.01	
c : 0.15	b : 0.15	d : 0.11	a : 0.09	3 : 0.07	2 : 0.07	e : 0.07	f : 0.03	= : 0.03	4 : 0.03	] : 0.03	g : 0.03	> : 0.01	[ : 0.01	7 : 0.01	
c : 0.15	b : 0.15	d : 0.11	2 : 0.11	e : 0.09	3 : 0.07	f : 0.05	] : 0.05	g : 0.05	= : 0.03	4 : 0.03	> : 0.01	7 : 0.01	
c : 0.11	e : 0.11	] : 0.11	g : 0.09	3 : 0.09	2 : 0.09	d : 0.09	f : 0.07	b : 0.07	= : 0.03	> : 0.01	a : 0.01	7 : 0.01	4 : 0.01	
c : 0.13	b : 0.13	d : 0.13	g : 0.11	e : 0.11	f : 0.07	a : 0.07	2 : 0.05	3 : 0.03	= : 0.03	> : 0.01	] : 0.01	[ : 0.01	7 : 0.01	
g : 0.13	] : 0.13	e : 0.11	f : 0.09	c : 0.09	d : 0.09	2 : 0.07	b : 0.07	a : 0.03	3 : 0.03	= : 0.03	> : 0.01	4 : 0.01	7 : 0.01	
e : 0.17	g : 0.13	d : 0.13	c : 0.11	2 : 0.11	f : 0.09	] : 0.07	= : 0.03	> : 0.01	4 : 0.01	7 : 0.01	i : 0.01	b : 0.01	3 : 0.01	
d : 0.15	g : 0.15	e : 0.15	2 : 0.11	c : 0.09	f : 0.07	] : 0.03	= : 0.03	a : 0.03	i : 0.03	> : 0.01	4 : 0.01	h : 0.01	b : 0.01	3 : 0.01	
d : 0.19	g : 0.13	e : 0.11	f : 0.09	c : 0.09	2 : 0.09	] : 0.05	= : 0.03	4 : 0.03	i : 0.03	5 : 0.03	> : 0.01	# : 0.01	h : 0.01	
d : 0.19	e : 0.13	g : 0.11	c : 0.09	f : 0.07	= : 0.05	2 : 0.05	] : 0.03	i : 0.03	5 : 0.03	b : 0.03	> : 0.01	# : 0.01	3 : 0.01	h : 0.01	a : 0.01	4 : 0.01	

#score	650.6246019858423
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_CDS_m3_run2.txt

#BEAR
CCC~~~~FFFFFF::::	chr6:26204757-26205049(+)$1	292	242	259	7.7283
EEEEEA}A}DDDD}GGG	chr2:98262431-98262750(+)$1	319	295	312	7.8133
EEEEEYYEEEEE:::::	chr7:10979563-10979855(-)$1	292	155	172	10.5204
FFFFFYYAYYEEEEE}A	chr19:49999594-49999824(+)$1	230	212	229	9.7866
}EEEEE}EEEEE}BBFF	chr12:131356521-131356773(+)$1	252	194	211	10.7214
FFFFZZZFFFFFFBB::	chr6:144416512-144416800(-)$1	288	83	100	8.9243
EEEEE}EEEEE}BB???	chr6:26021825-26022085(+)$1	260	212	229	10.0967
EEEEEYYEEEEE|||||	chr8:126010673-126010976(+)$1	303	163	180	8.7819
D}CCCYYEEEEE}A}BB	chr1:45478473-45478722(+)$1	249	147	164	10.1119
EEEEEYYEEEEECCC}G	chr5:81574037-81574242(-)$1	205	180	197	11.3582
EEEEEYYA}BBZZZBBZ	chr10:75541713-75542002(+)$1	289	159	176	9.7494
FFFFFYYDDDDHHHHHH	chr19:50000350-50000565(+)$1	215	86	103	6.9088
DDDDZZZDDDDDDDD}C	chr1:149858488-149858765(+)$1	277	255	272	7.7936
FFFFF}DDDDDDDD:::	chr12:131357028-131357263(+)$1	235	195	212	7.1961
HHHCCC}EEEEE:::::	chrX:119005747-119006053(+)$1	306	284	301	7.0991
DDYYFFFFFFYYBB:::	chr19:8386439-8386677(+)$1	238	219	236	7.7608
EEEEE}FFFFFF:::::	chrX:153060068-153060309(+)$1	241	205	222	8.3883
FFFFZZZFFFFFF}A}H	chr20:60962566-60962796(+)$1	230	192	209	8.8108
EEE~~~~EEEEE_____	chr1:205718997-205719220(-)$1	223	195	212	11.4319
}EEEEE}CCC}CCC}BB	chr12:57039581-57039850(-)$1	269	169	186	8.9618
DD}CCC}DDDD}BBYYC	chr12:56510477-56510683(+)$1	206	97	114	7.9183
EEEEZZZEEEEE}A}AY	chr11:118272300-118272522(+)$1	222	191	208	11.1360
}EEEEE}AA}BB:::::	chr12:6976647-6976905(+)$1	258	143	160	7.6600
EEE~~~~EEEEE}BBYY	chr11:64084824-64085089(-)$1	265	168	185	11.7027
DDD}AYYEEEEE:::::	chr10:7830042-7830320(+)$1	278	240	257	9.0802
DDDYYA}EEEEE_____	chr11:5291012-5291270(-)$1	258	135	152	10.1113
FFFFFF}EEEEEZZZDD	chr6:27100350-27100637(-)$1	287	230	247	9.2910
EEEEDDDDDDDD}CCC:	chr17:56429328-56429653(-)$1	325	286	303	8.2163
EEEEE}FFFFFFYYBB}	chr15:66797025-66797283(-)$1	258	181	198	9.9703
EEEEE}AEEEEEDDDD:	chr11:67351534-67351741(+)$1	207	118	135	9.7580
GG~~~~EEEEE}A::::	chr8:74204911-74205132(-)$1	221	198	215	8.3216
YFFFFFFEEEEECCC~~	chr6:26124429-26124672(+)$1	243	219	236	9.2151
EEEEZZZFFFFFF::::	chr14:50052926-50053207(-)$1	281	197	214	8.8415
YEEEEE}EEEEE:::::	chr9:35072246-35072534(-)$1	288	125	142	9.7940
DDDDZZZEEEEEA}CCC	chr11:67351841-67352102(+)$1	261	184	201	10.0651
FFFFFF}DDDD}CCC::	chr1:19923404-19923696(+)$1	292	186	203	8.2970
FFFFF~~~~DDDD::::	chr11:5290985-5291212(-)$1	227	209	226	8.1201
EEEEEYYCCCYYGGGGG	chr16:202762-203043(+)$1	281	227	244	7.6006
HHH~~~~EEEEE}BB:d	chr1:8934782-8935059(-)$1	277	193	210	8.8742
EEEEEYYFFFFFF}CCC	chr20:30193032-30193344(+)$1	312	174	191	10.5334
EEEEE}BBYYAYYBB}F	chr15:90777004-90777263(-)$1	259	126	143	9.8929
HHH~~~~CCCYYCCC::	chr11:63742045-63742316(+)$1	271	251	268	7.8847
DDD}A}EEEEEFFFFFF	chr1:36106924-36107221(-)$1	297	279	296	7.9299
EEE~~~~EEEEEYYCCC	chr6:170862155-170862478(-)$1	323	158	175	11.5953
EEEEE}CCC}BB~~~~C	chr19:8386336-8386554(+)$1	218	121	138	9.0774
FFFFFYYCCC}BB}A}C	chr15:45003618-45003913(+)$1	295	261	278	8.9000
E}DDDD}EEEEEZZZAZ	chr1:33502293-33502576(-)$1	283	216	233	9.3847
E}DDDD}EEEEE:::::	chr4:39459913-39460161(-)$1	248	230	247	8.3226
FFFFYYBB}EEEEECCC	chr5:140026967-140027302(-)$1	335	317	334	9.6092
}DDDD}FFFFFF}CCC}	chr5:177019109-177019432(+)$1	323	175	192	8.3323
EEEEEYYDDDDCCCCCC	chr1:228645377-228645637(-)$1	260	129	146	10.2464
FFFFFYYDDDDEEEEED	chr9:113018606-113018926(-)$1	320	289	306	8.7724
{EEEEEFFFFFF{CCC:	chr19:572492-572804(+)$1	312	2	19	7.4138
cDDDDEEEEECCC}BB:	chr6:27860776-27861050(-)$1	274	256	273	7.7323
EEEEE}EEEEEDDDD:c	chr12:49658768-49659070(+)$1	302	274	291	9.0922
I}CCCYYEEEEE}CCCE	chr12:21807397-21807688(-)$1	291	253	270	9.7538
:EEEEE}AYYEEEEE::	chr11:8704648-8704852(+)$1	204	186	203	9.0893
EEEEEYYDDDD}DDDD}	chr3:40498729-40498955(+)$1	226	127	144	9.4696
FFFFFYYEEEEE:::::	chr5:81573552-81573772(-)$1	220	199	216	9.5286
CCDDDD}FFFFFF}BB:	chr6:26217077-26217341(+)$1	264	128	145	7.7474

#otherMatches

#Seq PSSM
GUGUCAAGCGCAUUUCU	chr6:26204757-26205049(+)$1	292	242	259	7.7283
CGGCUCGUGCAGCUUCU	chr2:98262431-98262750(+)$1	319	295	312	7.8133
GACCUCUGCCGCAAACA	chr7:10979563-10979855(-)$1	292	155	172	10.5204
CGGCCAAGUUCGGGGGU	chr19:49999594-49999824(+)$1	230	212	229	9.7866
guggcggcggcgggaua	chr12:131356521-131356773(+)$1	252	194	211	10.7214
UGGCUUCACUCUCCUGU	chr6:144416512-144416800(-)$1	288	83	100	8.9243
GAAGCGGAUCUCUGGUC	chr6:26021825-26022085(+)$1	260	212	229	10.0967
GAGGGAUGCUGGUGAGG	chr8:126010673-126010976(+)$1	303	163	180	8.7819
AGCAGCCUGGGGAGAGG	chr1:45478473-45478722(+)$1	249	147	164	10.1119
GAGUAGGGCGGGGGAUG	chr5:81574037-81574242(-)$1	205	180	197	11.3582
GGGAACCCGCGGAAGCC	chr10:75541713-75542002(+)$1	289	159	176	9.7494
CUCAUAAUCUGUAGACU	chr19:50000350-50000565(+)$1	215	86	103	6.9088
AACAAGAAGACGCGCAU	chr1:149858488-149858765(+)$1	277	255	272	7.7936
UCGCGGGUCCCUCCUCC	chr12:131357028-131357263(+)$1	235	195	212	7.1961
GUGGGCAGGGAGACCGU	chrX:119005747-119006053(+)$1	306	284	301	7.0991
CCCUGCCAGCCGGAAUC	chr19:8386439-8386677(+)$1	238	219	236	7.7608
AGGAGGGAUGCGGGGGU	chrX:153060068-153060309(+)$1	241	205	222	8.3883
GUUGUGAUAUAUGUGCG	chr20:60962566-60962796(+)$1	230	192	209	8.8108
AGAGUGGGGGACAGAAG	chr1:205718997-205719220(-)$1	223	195	212	11.4319
UCAGCGUCGCUGCCCCC	chr12:57039581-57039850(-)$1	269	169	186	8.9618
AGAGCCAAGGUGAGCGG	chr12:56510477-56510683(+)$1	206	97	114	7.9183
CCUGAGAGGAAGAAGCG	chr11:118272300-118272522(+)$1	222	191	208	11.1360
AGUCUGGGGGAGCUCAU	chr12:6976647-6976905(+)$1	258	143	160	7.6600
GGUACCCGCCGGCGGCA	chr11:64084824-64085089(-)$1	265	168	185	11.7027
CGGGGCAGGGAGGAGGA	chr10:7830042-7830320(+)$1	278	240	257	9.0802
CUCAGGCCUGGCAUCAU	chr11:5291012-5291270(-)$1	258	135	152	10.1113
UGUGUACAAGGUUCUGA	chr6:27100350-27100637(-)$1	287	230	247	9.2910
GAAUGGGGCUGUGGGAC	chr17:56429328-56429653(-)$1	325	286	303	8.2163
GCCUUACCCCGUAUCUC	chr15:66797025-66797283(-)$1	258	181	198	9.9703
GUCUGGCAGGGAAGGGA	chr11:67351534-67351741(+)$1	207	118	135	9.7580
CCCAAAAGAUGGUAAGU	chr8:74204911-74205132(-)$1	221	198	215	8.3216
CCUGGAGCUGGCCGGCA	chr6:26124429-26124672(+)$1	243	219	236	9.2151
CGCUCUUGGUGAGAAAU	chr14:50052926-50053207(-)$1	281	197	214	8.8415
ACCGCUCGUAGCCGUUA	chr9:35072246-35072534(-)$1	288	125	142	9.7940
ACUCAAAGCCUCCUGCG	chr11:67351841-67352102(+)$1	261	184	201	10.0651
GUCGUGAAGAUAGGUAA	chr1:19923404-19923696(+)$1	292	186	203	8.2970
GAAUGAAGGGUGAAUAU	chr11:5290985-5291212(-)$1	227	209	226	8.1201
GAGACUCUGGAGAGGUG	chr16:202762-203043(+)$1	281	227	244	7.6006
UGGUUUCCAUGGUUCCU	chr1:8934782-8935059(-)$1	277	193	210	8.8742
GCAGCACCGCCACCGCC	chr20:30193032-30193344(+)$1	312	174	191	10.5334
GCUGUGCGCGCGGCGGG	chr15:90777004-90777263(-)$1	259	126	143	9.8929
GCGCCGUGGGCUGACCC	chr11:63742045-63742316(+)$1	271	251	268	7.8847
GUGAGAGGAAGCAGGGG	chr1:36106924-36107221(-)$1	297	279	296	7.9299
CUACAGCCAUGUAUUCG	chr6:170862155-170862478(-)$1	323	158	175	11.5953
GGUGGGGGCCCGAAUUU	chr19:8386336-8386554(+)$1	218	121	138	9.0774
UGCUCUCUCGCUCCGUG	chr15:45003618-45003913(+)$1	295	261	278	8.9000
CCCGGGGCCGGUAAAGG	chr1:33502293-33502576(-)$1	283	216	233	9.3847
AGUCGACAUUACUCUGA	chr4:39459913-39460161(-)$1	248	230	247	8.3226
CGCCCACAGCACGCGCG	chr5:140026967-140027302(-)$1	335	317	334	9.6092
ACCCUCCUGCUGGUGCU	chr5:177019109-177019432(+)$1	323	175	192	8.3323
GUGGUAAGCAGGGUGGC	chr1:228645377-228645637(-)$1	260	129	146	10.2464
UGGGGAAGGCGGUGGCG	chr9:113018606-113018926(-)$1	320	289	306	8.7724
GGCGUCCCCGGCGCUCG	chr19:572492-572804(+)$1	312	2	19	7.4138
GGGCCGGCGCGCCGGUU	chr6:27860776-27861050(-)$1	274	256	273	7.7323
CCUCGGGCCGCGCCCAG	chr12:49658768-49659070(+)$1	302	274	291	9.0922
UGUAUACACAGUUUCUU	chr12:21807397-21807688(-)$1	291	253	270	9.7538
GGUGGGCCUUGGGCUCU	chr11:8704648-8704852(+)$1	204	186	203	9.0893
GAGUCUUACUGUUGCGG	chr3:40498729-40498955(+)$1	226	127	144	9.4696
GCCCUAAAGGCCAACCC	chr5:81573552-81573772(-)$1	220	199	216	9.5286
UCUGGACGUGGAAAGCA	chr6:26217077-26217341(+)$1	264	128	145	7.7474

#DB
)))....))))))....	chr6:26204757-26205049(+)$1	1	242	259	7.7283
)))))).).)))).)))	chr2:98262431-98262750(+)$1	1	295	312	7.8133
)))))..))))).....	chr7:10979563-10979855(-)$1	1	155	172	10.5204
)))))..)..))))).)	chr19:49999594-49999824(+)$1	1	212	229	9.7866
.))))).))))).))))	chr12:131356521-131356773(+)$1	1	194	211	10.7214
))))...))))))))..	chr6:144416512-144416800(-)$1	1	83	100	8.9243
))))).))))).))...	chr6:26021825-26022085(+)$1	1	212	229	10.0967
)))))..))))).....	chr8:126010673-126010976(+)$1	1	163	180	8.7819
).)))..))))).).))	chr1:45478473-45478722(+)$1	1	147	164	10.1119
)))))..)))))))).)	chr5:81574037-81574242(-)$1	1	180	197	11.3582
)))))..).))...)).	chr10:75541713-75542002(+)$1	1	159	176	9.7494
)))))..))))((((((	chr19:50000350-50000565(+)$1	1	86	103	6.9088
))))...)))))))).)	chr1:149858488-149858765(+)$1	1	255	272	7.7936
))))).))))))))...	chr12:131357028-131357263(+)$1	1	195	212	7.1961
)))))).))))).....	chrX:119005747-119006053(+)$1	1	284	301	7.0991
))..))))))..))...	chr19:8386439-8386677(+)$1	1	219	236	7.7608
))))).)))))).....	chrX:153060068-153060309(+)$1	1	205	222	8.3883
))))...)))))).).)	chr20:60962566-60962796(+)$1	1	192	209	8.8108
)))....))))).....	chr1:205718997-205719220(-)$1	1	195	212	11.4319
.))))).))).))).))	chr12:57039581-57039850(-)$1	1	169	186	8.9618
)).))).)))).))..)	chr12:56510477-56510683(+)$1	1	97	114	7.9183
))))...))))).).).	chr11:118272300-118272522(+)$1	1	191	208	11.1360
.))))).)).)).....	chr12:6976647-6976905(+)$1	1	143	160	7.6600
)))....))))).))..	chr11:64084824-64085089(-)$1	1	168	185	11.7027
))).)..))))).....	chr10:7830042-7830320(+)$1	1	240	257	9.0802
)))..).))))).....	chr11:5291012-5291270(-)$1	1	135	152	10.1113
)))))).)))))...))	chr6:27100350-27100637(-)$1	1	230	247	9.2910
)))))))))))).))).	chr17:56429328-56429653(-)$1	1	286	303	8.2163
))))).))))))..)).	chr15:66797025-66797283(-)$1	1	181	198	9.9703
))))).)(((((((((.	chr11:67351534-67351741(+)$1	1	118	135	9.7580
))....))))).)....	chr8:74204911-74205132(-)$1	1	198	215	8.3216
.))))))))))))))..	chr6:26124429-26124672(+)$1	1	219	236	9.2151
))))...))))))....	chr14:50052926-50053207(-)$1	1	197	214	8.8415
.))))).))))).....	chr9:35072246-35072534(-)$1	1	125	142	9.7940
))))...)))))).)))	chr11:67351841-67352102(+)$1	1	184	201	10.0651
)))))).)))).)))..	chr1:19923404-19923696(+)$1	1	186	203	8.2970
)))))....))))....	chr11:5290985-5291212(-)$1	1	209	226	8.1201
)))))..)))..)))))	chr16:202762-203043(+)$1	1	227	244	7.6006
)))....))))).)).(	chr1:8934782-8935059(-)$1	1	193	210	8.8742
)))))..)))))).)))	chr20:30193032-30193344(+)$1	1	174	191	10.5334
))))).))..)..)).)	chr15:90777004-90777263(-)$1	1	126	143	9.8929
)))....)))..)))..	chr11:63742045-63742316(+)$1	1	251	268	7.8847
))).).)))))))))))	chr1:36106924-36107221(-)$1	1	279	296	7.9299
)))....)))))..)))	chr6:170862155-170862478(-)$1	1	158	175	11.5953
))))).))).))....)	chr19:8386336-8386554(+)$1	1	121	138	9.0774
)))))..))).)).).)	chr15:45003618-45003913(+)$1	1	261	278	8.9000
).)))).)))))...).	chr1:33502293-33502576(-)$1	1	216	233	9.3847
).)))).))))).....	chr4:39459913-39460161(-)$1	1	230	247	8.3226
))))..)).))))))))	chr5:140026967-140027302(-)$1	1	317	334	9.6092
.)))).)))))).))).	chr5:177019109-177019432(+)$1	1	175	192	8.3323
)))))..))))))))))	chr1:228645377-228645637(-)$1	1	129	146	10.2464
)))))..))))))))))	chr9:113018606-113018926(-)$1	1	289	306	8.7724
.(((((((((((.(((.	chr19:572492-572804(+)$1	1	2	19	7.4138
))))))))))))).)).	chr6:27860776-27861050(-)$1	1	256	273	7.7323
))))).))))))))).(	chr12:49658768-49659070(+)$1	1	274	291	9.0922
).)))..))))).))))	chr12:21807397-21807688(-)$1	1	253	270	9.7538
.))))).)..)))))..	chr11:8704648-8704852(+)$1	1	186	203	9.0893
)))))..)))).)))).	chr3:40498729-40498955(+)$1	1	127	144	9.4696
)))))..))))).....	chr5:81573552-81573772(-)$1	1	199	216	9.5286
)))))).)))))).)).	chr6:26217077-26217341(+)$1	1	128	145	7.7474

#PSSM
E : 0.39	F : 0.19	D : 0.13	} : 0.06	H : 0.05	C : 0.03	Y : 0.03	G : 0.01	{ : 0.01	c : 0.01	I : 0.01	: : 0.01	
E : 0.46	F : 0.21	D : 0.15	} : 0.06	H : 0.05	C : 0.03	G : 0.01	
E : 0.46	F : 0.21	D : 0.16	C : 0.05	H : 0.05	Y : 0.01	} : 0.01	~ : 0.01	
E : 0.41	F : 0.21	~ : 0.11	D : 0.11	C : 0.06	Y : 0.03	} : 0.03	
E : 0.36	F : 0.18	~ : 0.11	Z : 0.09	D : 0.09	C : 0.06	A : 0.03	Y : 0.03	
Y : 0.28	} : 0.16	~ : 0.13	E : 0.11	Z : 0.09	F : 0.06	D : 0.06	A : 0.03	C : 0.03	
Y : 0.26	} : 0.23	~ : 0.11	Z : 0.09	F : 0.09	E : 0.08	D : 0.03	B : 0.03	A : 0.01	C : 0.01	
E : 0.44	F : 0.18	D : 0.15	A : 0.08	C : 0.08	B : 0.03	~ : 0.01	
E : 0.44	F : 0.18	D : 0.15	C : 0.08	} : 0.05	Y : 0.05	A : 0.01	~ : 0.01	
E : 0.46	F : 0.18	D : 0.18	C : 0.06	Y : 0.05	} : 0.03	B : 0.01	
E : 0.48	D : 0.18	F : 0.16	B : 0.05	Y : 0.05	} : 0.03	A : 0.01	C : 0.01	
E : 0.43	F : 0.18	D : 0.09	} : 0.08	Y : 0.06	C : 0.05	B : 0.05	Z : 0.01	H : 0.01	
: : 0.13	} : 0.13	F : 0.11	D : 0.11	C : 0.11	E : 0.06	B : 0.06	Z : 0.05	Y : 0.05	_ : 0.03	A : 0.03	| : 0.01	H : 0.01	G : 0.01	~ : 0.01	{ : 0.01	
: : 0.19	C : 0.16	B : 0.13	} : 0.11	D : 0.08	E : 0.06	Z : 0.05	A : 0.03	_ : 0.03	Y : 0.03	| : 0.01	H : 0.01	G : 0.01	F : 0.01	~ : 0.01	
: : 0.23	C : 0.21	B : 0.15	D : 0.06	E : 0.05	} : 0.05	G : 0.03	A : 0.03	_ : 0.03	Z : 0.03	? : 0.01	| : 0.01	H : 0.01	Y : 0.01	F : 0.01	~ : 0.01	
: : 0.33	C : 0.15	} : 0.09	B : 0.09	D : 0.05	G : 0.03	F : 0.03	_ : 0.03	Y : 0.03	A : 0.03	~ : 0.03	? : 0.01	| : 0.01	H : 0.01	E : 0.01	
: : 0.38	C : 0.15	G : 0.05	F : 0.05	} : 0.05	B : 0.03	Z : 0.03	H : 0.03	_ : 0.03	Y : 0.03	D : 0.03	A : 0.01	? : 0.01	| : 0.01	~ : 0.01	d : 0.01	c : 0.01	E : 0.01	

#score	544.2281808073202
#seq	60
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_CDS_m2_run1.txt

#BEAR
!bb[a[dddd[aooooooa]dddda]	chr1:228327931-228328179(+)$1	248	45	71	10.1593
hhccc[bbbb[bbmmmmbb]bb]bb]	chr2:21266636-21266901(-)$1	265	123	149	9.0738
eeeee[ddddddddllldddd4444d	chr3:133467155-133467387(+)$1	232	194	220	7.6779
ddd[a[dddd[cccooooooccc]dd	chr2:97533379-97533616(-)$1	237	33	59	8.9489
eeeee!!bb!!bboooooobb]bb]e	chr11:5275503-5275744(-)$1	241	169	195	8.5985
Edddd!!ddddoooooodddd]dddd	chr3:186330775-186331086(+)$1	311	148	174	7.9902
gdddd[ggggggglllggggggg333	chr12:57039567-57039835(-)$1	268	112	138	8.4938
fff[eeeee!!ccclllccceeeeef	chr19:1104624-1104875(+)$1	251	50	76	7.6634
geeeee"""cccooooooccc22eee	chr19:2270346-2270589(+)$1	243	179	205	7.6162
ccc==========mmmm=========	chr21:38119979-38120204(+)$1	225	129	155	9.6293
ff####eeeeebbmmmmbb]eeeee6	chr17:48827967-48828254(+)$1	287	133	159	8.5407
ccc[ffffff[bblllbbffffff]c	chr14:23770951-23771156(+)$1	205	66	92	8.3493
hhccc[bbbb[bbmmmmbb]bb]bb]	chr2:21266704-21267036(-)$1	332	258	284	9.0738
ddddd[ddddoooooodddd]dddd2	chr6:31508840-31509044(-)$1	204	160	186	8.2829
b[===========mmmm=========	chr6:31937067-31937359(+)$1	292	240	266	9.1314
ddddd[ddddoooooodddd]dddd2	chr6:31508813-31509030(-)$1	217	146	172	8.2829
dddd!!dddd[cccmmmmccc]dddd	chr3:15900714-15900989(-)$1	275	52	78	9.0990
:ccc!!ddddccclllccc]dddd22	chr22:19929020-19929366(-)$1	346	317	343	8.6424
fffff[dddd[bbmmmmbbddddfff	chr3:13418961-13419228(-)$1	267	55	81	9.6855
ddd!!dddd!!bbmmmmbb22dddd4	chr8:145693805-145694074(+)$1	269	188	214	10.4526
::dddddddd[bboooooobb]dddd	chr15:66795595-66795798(-)$1	203	165	191	7.6322
eeggggggg!!bblllbb22gggggg	chr11:116707960-116708207(-)$1	247	164	190	8.7540
eeeee[a[cccbbmmmmbb22ccc]a	chr3:13461567-13461855(-)$1	288	23	49	9.6537
d]ccceeeee[bbmmmmbb333eeee	chr8:30669826-30670090(-)$1	264	194	220	9.8129
[dddd[bb[cccmmmmccc]bb]ddd	chr5:180670207-180670479(-)$1	272	125	151	7.8457
[ccc[a[ccc[bbmmmmbb]ccc]a]	chr7:45144099-45144429(-)$1	330	241	267	10.5279
ccc[ffffff[bblllbbffffff]c	chr14:23770956-23771176(+)$1	220	61	87	8.3493

#otherMatches

#Seq PSSM
UUCAGUGGGCGGAAGAGGUGGCCCCG	chr1:228327931-228328179(+)$1	248	45	71	10.1593
cugccugcgcugcugcugcugcugcu	chr2:21266636-21266901(-)$1	265	123	149	9.0738
AAGCGUCAUUCCAUCCGAUGGUCCCA	chr3:133467155-133467387(+)$1	232	194	220	7.6779
UGUGGGGCCUGGGCAUUGGGGCUGAG	chr2:97533379-97533616(-)$1	237	33	59	8.9489
CAGCUGAGUGAACUGCACUGUGACAA	chr11:5275503-5275744(-)$1	241	169	195	8.5985
GGCAGCCAUGAAGUCCCUCGUCCUGC	chr3:186330775-186331086(+)$1	311	148	174	7.9902
GCCGCUGCUCCGGCCUCCGGGGCCUU	chr12:57039567-57039835(-)$1	268	112	138	8.4938
UUGUCCCCGCUAGCGGCGCUCGGGGU	chr19:1104624-1104875(+)$1	251	50	76	7.6634
UGGCGCACUCCGACAGCCCGGCAGCG	chr19:2270346-2270589(+)$1	243	179	205	7.6162
gcccgcgcggcacccgagugcugcgc	chr21:38119979-38120204(+)$1	225	129	155	9.6293
UUGACAGUGCAGCGUAAGUAUGCACA	chr17:48827967-48828254(+)$1	287	133	159	8.5407
CGGGCGGCGAAGCCGGGCUCGCUGGC	chr14:23770951-23771156(+)$1	205	66	92	8.3493
cugccugcgcugcugcugcugcugcu	chr2:21266704-21267036(-)$1	332	258	284	9.0738
GAUGGCUGCUGAGUUAGGCAUCCAUA	chr6:31508840-31509044(-)$1	204	160	186	8.2829
CAGGGCUCUCAGGGACCCCUGAGGGC	chr6:31937067-31937359(+)$1	292	240	266	9.1314
GAUGGCUGCUGAGUUAGGCAUCCAUA	chr6:31508813-31509030(-)$1	217	146	172	8.2829
gcuggagugggcgcggaggcgaccgc	chr3:15900714-15900989(-)$1	275	52	78	9.0990
AAGUAGCCCCCUUCCCAGGUGGGGAA	chr22:19929020-19929366(-)$1	346	317	343	8.6424
GGGCUUCUCGUGUGGAUGCUGAGGGC	chr3:13418961-13419228(-)$1	267	55	81	9.6855
UGCAGGCGUGAGCUACAGCAGAUGCA	chr8:145693805-145694074(+)$1	269	188	214	10.4526
CUUCAUUGGUCCGUGUUUCUGAACCA	chr15:66795595-66795798(-)$1	203	165	191	7.6322
UAGGGAGCCAACCAUCGGGGGGCUUU	chr11:116707960-116708207(-)$1	247	164	190	8.7540
cgcgcUCAUCACCUGCUGGCCUggcg	chr3:13461567-13461855(-)$1	288	23	49	9.6537
CGAGCAGCUGAACGAGUGUAAGCAGC	chr8:30669826-30670090(-)$1	264	194	220	9.8129
AUCUGAGUGUCGGUGCUGAAAUCCAG	chr5:180670207-180670479(-)$1	272	125	151	7.8457
AAGCCCUUCUCUCUGACGAAAGAUGU	chr7:45144099-45144429(-)$1	330	241	267	10.5279
CGGGCGGCGAAGCCGGGCUCGCUGGC	chr14:23770956-23771176(+)$1	220	61	87	8.3493

#DB
.((.(.((((.(......).))))).	chr1:228327931-228328179(+)$1	1	45	71	10.1593
(((((.((((.((....)).)).)).	chr2:21266636-21266901(-)$1	1	123	149	9.0738
(((((.((((((((...))))....)	chr3:133467155-133467387(+)$1	1	194	220	7.6779
(((.(.((((.(((......))).))	chr2:97533379-97533616(-)$1	1	33	59	8.9489
(((((..((..((......)).)).)	chr11:5275503-5275744(-)$1	1	169	195	8.5985
)((((..((((......)))).))))	chr3:186330775-186331086(+)$1	1	148	174	7.9902
)((((.(((((((...)))))))...	chr12:57039567-57039835(-)$1	1	112	138	8.4938
(((.(((((..(((...)))))))))	chr19:1104624-1104875(+)$1	1	50	76	7.6634
((((((...(((......)))..)))	chr19:2270346-2270589(+)$1	1	179	205	7.6162
)))((((((((((....)))))))))	chr21:38119979-38120204(+)$1	1	129	155	9.6293
((....(((((((....)).))))).	chr17:48827967-48828254(+)$1	1	133	159	8.5407
(((.((((((.((...)))))))).)	chr14:23770951-23771156(+)$1	1	66	92	8.3493
(((((.((((.((....)).)).)).	chr2:21266704-21267036(-)$1	1	258	284	9.0738
(((((.((((......)))).)))).	chr6:31508840-31509044(-)$1	1	160	186	8.2829
(.(((((((((((....)))))))))	chr6:31937067-31937359(+)$1	1	240	266	9.1314
(((((.((((......)))).)))).	chr6:31508813-31509030(-)$1	1	146	172	8.2829
((((..((((.(((....))).))))	chr3:15900714-15900989(-)$1	1	52	78	9.0990
.(((..(((((((...))).))))..	chr22:19929020-19929366(-)$1	1	317	343	8.6424
(((((.((((.((....)))))))))	chr3:13418961-13419228(-)$1	1	55	81	9.6855
(((..((((..((....))..)))).	chr8:145693805-145694074(+)$1	1	188	214	10.4526
..((((((((.((......)).))))	chr15:66795595-66795798(-)$1	1	165	191	7.6322
))(((((((..((...))..))))))	chr11:116707960-116708207(-)$1	1	164	190	8.7540
(((((.(.(((((....))..))).)	chr3:13461567-13461855(-)$1	1	23	49	9.6537
).)))(((((.((....))...))))	chr8:30669826-30670090(-)$1	1	194	220	9.8129
.((((.((.(((....))).)).)))	chr5:180670207-180670479(-)$1	1	125	151	7.8457
.(((.(.(((.((....)).))).).	chr7:45144099-45144429(-)$1	1	241	267	10.5279
(((.((((((.((...)))))))).)	chr14:23770956-23771176(+)$1	1	61	87	8.3493

#PSSM
d : 0.22	e : 0.14	f : 0.11	c : 0.11	h : 0.07	g : 0.07	: : 0.07	[ : 0.07	! : 0.03	E : 0.03	b : 0.03	
d : 0.29	e : 0.18	c : 0.18	f : 0.11	h : 0.07	b : 0.03	[ : 0.03	: : 0.03	] : 0.03	
d : 0.33	c : 0.29	e : 0.14	f : 0.07	b : 0.03	# : 0.03	= : 0.03	g : 0.03	
d : 0.25	[ : 0.18	c : 0.18	e : 0.14	= : 0.07	# : 0.03	f : 0.03	! : 0.03	g : 0.03	
d : 0.22	e : 0.18	c : 0.11	f : 0.11	! : 0.11	a : 0.07	= : 0.07	# : 0.03	g : 0.03	[ : 0.03	
[ : 0.40	! : 0.14	e : 0.11	= : 0.07	f : 0.07	d : 0.07	# : 0.03	g : 0.03	a : 0.03	
d : 0.37	b : 0.11	e : 0.11	! : 0.07	g : 0.07	= : 0.07	f : 0.07	" : 0.03	a : 0.03	[ : 0.03	
d : 0.40	b : 0.14	e : 0.11	g : 0.07	= : 0.07	f : 0.07	" : 0.03	[ : 0.03	c : 0.03	
d : 0.40	b : 0.11	e : 0.11	g : 0.07	= : 0.07	f : 0.07	c : 0.07	" : 0.03	[ : 0.03	
d : 0.37	! : 0.14	c : 0.14	b : 0.07	= : 0.07	e : 0.07	f : 0.07	g : 0.03	
[ : 0.40	! : 0.14	c : 0.14	d : 0.07	= : 0.07	o : 0.07	g : 0.03	e : 0.03	
b : 0.48	c : 0.22	o : 0.11	= : 0.07	a : 0.03	d : 0.03	g : 0.03	
b : 0.48	o : 0.18	c : 0.14	= : 0.07	d : 0.03	g : 0.03	m : 0.03	
m : 0.40	o : 0.25	l : 0.18	c : 0.11	d : 0.03	
m : 0.44	o : 0.29	l : 0.25	
m : 0.44	o : 0.29	l : 0.25	
m : 0.40	o : 0.22	b : 0.11	l : 0.07	d : 0.07	c : 0.07	g : 0.03	
b : 0.40	o : 0.18	d : 0.14	c : 0.11	= : 0.07	g : 0.03	m : 0.03	
b : 0.29	c : 0.18	d : 0.14	o : 0.11	= : 0.07	f : 0.07	a : 0.03	g : 0.03	2 : 0.03	
] : 0.25	d : 0.18	c : 0.11	2 : 0.11	b : 0.07	= : 0.07	f : 0.07	o : 0.03	g : 0.03	3 : 0.03	
d : 0.18	b : 0.18	c : 0.14	g : 0.07	e : 0.07	= : 0.07	f : 0.07	] : 0.07	2 : 0.07	3 : 0.03	
d : 0.22	] : 0.14	b : 0.11	c : 0.11	g : 0.07	e : 0.07	= : 0.07	f : 0.07	4 : 0.03	2 : 0.03	3 : 0.03	
d : 0.33	] : 0.11	c : 0.11	e : 0.11	g : 0.07	= : 0.07	f : 0.07	4 : 0.03	b : 0.03	2 : 0.03	
d : 0.33	e : 0.14	b : 0.11	f : 0.11	] : 0.07	= : 0.07	4 : 0.03	3 : 0.03	g : 0.03	c : 0.03	
d : 0.29	] : 0.14	e : 0.14	a : 0.07	b : 0.07	= : 0.07	4 : 0.03	3 : 0.03	2 : 0.03	f : 0.03	g : 0.03	
d : 0.22	] : 0.14	e : 0.11	2 : 0.11	f : 0.07	= : 0.07	c : 0.07	3 : 0.03	6 : 0.03	4 : 0.03	g : 0.03	a : 0.03	

#score	237.9687481296333
#seq	27
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_transcript_m1_run1.txt

#BEAR
##ccc^^^^^^^^^^^^^^^^^^^^ccc333	chr5:53342431-53342712(-)$1	281	106	137	35.5513
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:7311174-7311485(+)$1	311	252	283	39.8242
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:73064669-73064891(-)$1	222	109	140	40.0794
ccc[bb^^^^^^^^^^^^^^^^^^^^^bb]c	chr2:27264208-27264549(+)$1	341	198	229	36.0434
ee^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr10:129922991-129923303(-)$1	312	90	121	38.5743
eeeee^^^^^^^^^^^^^^^^^^^^^^eeee	chr1:27481086-27481383(-)$1	297	193	224	37.8181
hhhhhh^^^^^^^^^^^^^^^^^^^^^hhhh	chr1:151030422-151030740(-)$1	318	247	278	33.3686
ee^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr20:49546718-49546978(-)$1	260	184	215	38.5743
=====^^^^^^^^^^^^^^^^^^^^^^====	chr5:1333418-1333698(-)$1	280	243	274	37.9835
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr11:63858361-63858682(-)$1	321	45	76	38.2685
fffff^^^^^^^^^^^^^^^^^^^^^^ffff	chr11:71943303-71943609(+)$1	306	99	130	37.1919
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:2298364-2298666(-)$1	302	78	109	39.8242
!dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:44201608-44201920(+)$1	312	78	109	40.0835
""bb^^^^^^^^^^^^^^^^^^^^^^^bb33	chr12:57112493-57112719(-)$1	226	138	169	37.5500
ffffff^^^^^^^^^^^^^^^^^^^^fffff	chr21:9926693-9926953(-)$1	260	214	245	34.3097
eeeee^^^^^^^^^^^^^^^^^^^^eeeee3	chr2:97557194-97557482(-)$1	288	232	263	34.9322
"dddd^^^^^^^^^^^^^^^^^^^^^^^ddd	chr19:50919158-50919483(+)$1	325	235	266	38.3406
eeeee^^^^^^^^^^^^^^^^^^^^^eeeee	chr1:143407771-143408043(-)$1	272	20	51	36.3776
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:16946908-16947216(-)$1	308	126	157	40.2152
!!dddd^^^^^^^^^^^^^^^^^^^^dddd]	chr14:102247741-102248001(+)$1	260	144	175	34.8158
ggggg^^^^^^^^^^^^^^^^^^^^^^gggg	chr10:121355360-121355640(-)$1	280	119	150	37.6417
!!ccc^^^^^^^^^^^^^^^^^^^^^^^ccc	chr7:64140293-64140666(+)$1	373	17	48	38.9840
dd!!ccc^^^^^^^^^^^^^^^^^^^^cccd	chr4:1331477-1331774(+)$1	297	21	52	35.3503
ffff^^^^^^^^^^^^^^^^^^^^^^^^fff	chr20:62259289-62259593(+)$1	304	131	162	38.2799
ee[dddd^^^^^^^^^^^^^^^^^^^^dddd	chr19:39833783-39834091(+)$1	308	168	199	34.7420
ffffffff^^^^^^^^^^^^^^^^^^^ffff	chrX:73065218-73065486(-)$1	268	167	198	32.7207
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:14246397-14246670(-)$1	273	69	100	40.2152
ffff^^^^^^^^^^^^^^^^^^^^^^^ffff	chr12:25090871-25091143(-)$1	272	120	151	37.3593
"""bb^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:100064864-100065131(-)$1	267	92	123	39.6191
dd^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr7:30634763-30635061(+)$1	298	259	290	38.1472
hhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^	chr9:140563696-140564022(+)$1	326	201	232	39.1658
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:153690937-153691258(+)$1	321	123	154	39.8242
cc!!dddd^^^^^^^^^^^^^^^^^^^dddd	chr19:19642866-19643184(+)$1	318	197	228	33.0484
[bb^^^^^^^^^^^^^^^^^^^^^^^^^^bb	chr7:100068607-100068871(-)$1	264	23	54	38.4195
[bb[a^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:89450734-89451086(-)$1	352	161	192	39.8349
c[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:151030320-151030567(-)$1	247	76	107	40.1377
hhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^	chr22:22895684-22895934(-)$1	250	108	139	39.1658
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr9:132252444-132252680(+)$1	236	170	201	37.1036
ffff^^^^^^^^^^^^^^^^^^^^^^^^fff	chr7:102017517-102017841(+)$1	324	123	154	38.2799
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:35260171-35260442(+)$1	271	60	91	40.2152
"dddd^^^^^^^^^^^^^^^^^^^^^^^^^d	chr8:145288152-145288471(+)$1	319	91	122	39.4701
c!!bb^^^^^^^^^^^^^^^^^^^^^^^^^b	chr18:34376603-34376903(-)$1	300	130	161	39.1176
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:97542408-97542755(-)$1	347	76	107	40.0794
eeee!!ccc^^^^^^^^^^^^^^^^^^ccc2	chr12:49332407-49332690(-)$1	283	138	169	32.9339
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^	chr21:47675312-47675630(-)$1	318	68	99	40.2152
eeee^^^^^^^^^^^^^^^^^^^^^^^^eee	chr19:2758800-2759153(-)$1	353	158	189	38.8037
eeee^^^^^^^^^^^^^^^^^^^^^^^^eee	chr19:17532860-17533157(+)$1	297	250	281	38.8037
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr16:31509171-31509496(-)$1	325	158	189	37.1036
hhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:57824511-57824825(-)$1	314	89	120	39.1658
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:7812998-7813327(+)$1	329	267	298	40.2152
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^	chr22:42318504-42318821(-)$1	317	18	49	39.8242
ggggg^^^^^^^^^^^^^^^^^^^^^^gggg	chr17:4848114-4848459(+)$1	345	291	322	37.6417
ggggggg^^^^^^^^^^^^^^^^^^^^gggg	chr6:5246670-5247013(-)$1	343	150	181	34.8370
hhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^	chr9:140563846-140564165(+)$1	319	51	82	39.1658
!bb"""bb^^^^^^^^^^^^^^^^^^^bb]b	chr19:50435809-50436134(+)$1	325	44	75	33.2388
!dddd^^^^^^^^^^^^^^^^^^^^^^dddd	chr1:26606968-26607215(+)$1	247	123	154	37.5387
gg[bb^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:47452099-47452366(+)$1	267	156	187	39.7445
iiiiiii^^^^^^^^^^^^^^^^^^^^iiii	chr22:50019748-50020074(-)$1	326	277	308	34.6125
eeee[ccc^^^^^^^^^^^^^^^^^^ccc]e	chr1:26607590-26607847(+)$1	257	182	213	32.9266
dddd[bb^^^^^^^^^^^^^^^^^^^bb]dd	chr17:73138478-73138777(-)$1	299	99	130	33.1039
adddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:92291504-92291823(-)$1	319	153	184	39.8888
[dddd^^^^^^^^^^^^^^^^^^^^^ddddb	chr21:47640711-47640990(-)$1	279	185	216	35.9357
e[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^	chr18:75693110-75693418(-)$1	308	173	204	40.2189
""ccc^^^^^^^^^^^^^^^^^^^^^ccc]f	chr2:231625264-231625661(+)$1	397	179	210	36.6261
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:46283710-46284067(-)$1	357	122	153	40.2152
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:6308-6536(+)$1	228	73	104	39.8242
#dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:153596778-153597037(-)$1	259	102	133	39.9468
ggggg^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:47031279-47031551(+)$1	272	8	39	40.1451
ee^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr19:6533971-6534245(+)$1	274	154	185	38.5743

#otherMatches

#Seq PSSM
CCUUCUGCCCUUCAUCUACUUACCUGAAUUU	chr5:53342431-53342712(-)$1	281	106	137	35.5513
CCAGGucccuccccaacccccuccucccucc	chr17:7311174-7311485(+)$1	311	252	283	39.8242
CUGCCCCACCCCACCCUCAAUCUUCCUUUCC	chrX:73064669-73064891(-)$1	222	109	140	40.0794
CUCCACUGUCCAUCCCUCCUAUCAUCUGUAG	chr2:27264208-27264549(+)$1	341	198	229	36.0434
CCUCACCCUGUCCUCCCAACCCCAUCCCGGC	chr10:129922991-129923303(-)$1	312	90	121	38.5743
AAAGGUCCCAGCCUUCCUUCUUCCUUUCCUU	chr1:27481086-27481383(-)$1	297	193	224	37.8181
UGGGGGUUUCCUCUAAUUCUUCAUUUUUCCC	chr1:151030422-151030740(-)$1	318	247	278	33.3686
UUCACCACCAUCCCUUUUCCCCAAUCUCAGC	chr20:49546718-49546978(-)$1	260	184	215	38.5743
AUACAAUAGUCCCUCAUCCUCAUCCCGUGUG	chr5:1333418-1333698(-)$1	280	243	274	37.9835
ccccaucccucuucuauccuccucccaugcc	chr11:63858361-63858682(-)$1	321	45	76	38.2685
GUCUCUUUACACCCAUCCCAUUCACCUGAGG	chr11:71943303-71943609(+)$1	306	99	130	37.1919
accacuugccaccccugccccacugacuguc	chr17:2298364-2298666(-)$1	302	78	109	39.8242
UAUACUCCAUUCUCCCCUGCGCCUCCUCCUC	chr6:44201608-44201920(+)$1	312	78	109	40.0835
AUCCAUGACUUCUUCCUCCCCCAAAAAGGCC	chr12:57112493-57112719(-)$1	226	138	169	37.5500
CACUCGUAGCCUCCCACCUCUCAGACCGAGU	chr21:9926693-9926953(-)$1	260	214	245	34.3097
AGUUUUAAUUCCUUUGUCCUUCUCUGAACUC	chr2:97557194-97557482(-)$1	288	232	263	34.9322
CAUGACCUCUGACCUCCUGACCCCUUCCUCA	chr19:50919158-50919483(+)$1	325	235	266	38.3406
GAUUCCCUCCAACCCUCUCCACCCCAGAAUC	chr1:143407771-143408043(-)$1	272	20	51	36.3776
CUGGCAACCCCUGACCCCCUUCAUUCCUCAC	chr1:16946908-16947216(-)$1	308	126	157	40.2152
CCCUCUGCCCCAACCACGUUUUCUCAAGAGU	chr14:102247741-102248001(+)$1	260	144	175	34.8158
GAGGAAUUAGCACUCACCCCUUCCACGUCCU	chr10:121355360-121355640(-)$1	280	119	150	37.6417
ccgcccaucugcuccccuaccacccucuggc	chr7:64140293-64140666(+)$1	373	17	48	38.9840
gacugacucugccccugcccugugacugucu	chr4:1331477-1331774(+)$1	297	21	52	35.3503
CGGCACCCCAUCCCACCCAUGUCCCACAGUC	chr20:62259289-62259593(+)$1	304	131	162	38.2799
UUUCUGAUUCCCCCUCCCAGAAGUCCUUCAG	chr19:39833783-39834091(+)$1	308	168	199	34.7420
AGUGUCCACUCCAUAUACCCUUACAUUUGGA	chrX:73065218-73065486(-)$1	268	167	198	32.7207
CCCCCAAUAUCCAGCCCCUUCCCAUUUUCCC	chr19:14246397-14246670(-)$1	273	69	100	40.2152
gcacuuaccuccucucuucccucccaugugc	chr12:25090871-25091143(-)$1	272	120	151	37.3593
UCCUCUGCCCCCUCCUGCCACCACCUCCACC	chr7:100064864-100065131(-)$1	267	92	123	39.6191
CUCCGUUCUCCCUUCCCCAUUCUGUCACAGC	chr7:30634763-30635061(+)$1	298	259	290	38.1472
CGUGCACUCACCUCCACCCAAGACGCCCCCC	chr9:140563696-140564022(+)$1	326	201	232	39.1658
GCUCACUACUUCCCAUCCUUCCCCUCCUACC	chrX:153690937-153691258(+)$1	321	123	154	39.8242
CAUCGAAGUCCUUCAUGCUCCAUUCCCCUUU	chr19:19642866-19643184(+)$1	318	197	228	33.0484
CCUCCCCAGCCCCGCCCCAAAGACACCACAG	chr7:100068607-100068871(-)$1	264	23	54	38.4195
ugucgucccauccugucccauuuccaucucg	chr16:89450734-89451086(-)$1	352	161	192	39.8349
GGGGUUUCCUCUAAUUCUUCAUUUUUCCCCA	chr1:151030320-151030567(-)$1	247	76	107	40.1377
UACAAAUGCCCAGCCUUACUUCUGACUAACU	chr22:22895684-22895934(-)$1	250	108	139	39.1658
UAGCACUACCCcacaacacacacacacaccg	chr9:132252444-132252680(+)$1	236	170	201	37.1036
CGCUCCCUCAGCUUUCCCCUCUUUCCCCAGU	chr7:102017517-102017841(+)$1	324	123	154	38.2799
cuggcucucccuucaccaacccugucccuca	chr6:35260171-35260442(+)$1	271	60	91	40.2152
ccugcacccaccaucaaccuucccucccCCG	chr8:145288152-145288471(+)$1	319	91	122	39.4701
AAGUGAGCACCCCUCCCUCCAACUCCCUACC	chr18:34376603-34376903(-)$1	300	130	161	39.1176
ccugacucccaagccucugaccuaaccaacu	chr2:97542408-97542755(-)$1	347	76	107	40.0794
UGACCAAUCCCUAAUUGCUGUCCUGAUGAUG	chr12:49332407-49332690(-)$1	283	138	169	32.9339
GGCAGUUCAACCUCUAAACCUGAUUUUUCCC	chr21:47675312-47675630(-)$1	318	68	99	40.2152
gucacuccccaaccccucuccuauccccuga	chr19:2758800-2759153(-)$1	353	158	189	38.8037
CUCUCUCACUCCCCUACCCCCCACUCCCAGA	chr19:17532860-17533157(+)$1	297	250	281	38.8037
UCCUCCAUCUUCCUGUCACCACCUCUCACUG	chr16:31509171-31509496(-)$1	325	158	189	37.1036
uuugguuccccccuuuucuuccccucucccc	chr12:57824511-57824825(-)$1	314	89	120	39.1658
UGUAAUACUGACCUUCUAACCUCCCUCUCCC	chr17:7812998-7813327(+)$1	329	267	298	40.2152
ggccaccccaucucccaccccaucuucucuu	chr22:42318504-42318821(-)$1	317	18	49	39.8242
UUCUCCCUUACCCACACCUAUCCUUUUGAGG	chr17:4848114-4848459(+)$1	345	291	322	37.6417
UCACCCAUCCCAUGCUGACUUCUAACCUGGG	chr6:5246670-5247013(-)$1	343	150	181	34.8370
CGUGCACUCACCUCCACCCAAGACGCCCCCC	chr9:140563846-140564165(+)$1	319	51	82	39.1658
UGCCCCGCCCCUCccaccacccuccccgccg	chr19:50435809-50436134(+)$1	325	44	75	33.2388
AGCCUGACUCAUCCUCCCAACUCCUAGAGGC	chr1:26606968-26607215(+)$1	247	123	154	37.5387
GGACUCCUACCCCCACAAUCCCCCUACCCCU	chr3:47452099-47452366(+)$1	267	156	187	39.7445
guuuuuuuuucuuuuuuuuuuuuuuucgagg	chr22:50019748-50020074(-)$1	326	277	308	34.6125
AUGUAGUCCCCUCUCCUCCAUCUAAAGGCAA	chr1:26607590-26607847(+)$1	257	182	213	32.9266
cucccucuccccuccccuccccccuUgacgg	chr17:73138478-73138777(-)$1	299	99	130	33.1039
CCAUCCCCACGAUCCUUAAGCCCCAACCUAC	chr7:92291504-92291823(-)$1	319	153	184	39.8888
CGCCAACUAUCUUUCUCUCCAAGCCCUGGCC	chr21:47640711-47640990(-)$1	279	185	216	35.9357
CCAGCUGCCCUACUGCUCUAGUCCUCUCCUC	chr18:75693110-75693418(-)$1	308	173	204	40.2189
ACAGUCCAAAACCCAACUUUCAUCCCACUUG	chr2:231625264-231625661(+)$1	397	179	210	36.6261
cucccauacccaucccucucuccauccugcc	chr19:46283710-46284067(-)$1	357	122	153	40.2152
GGGGCCAUCAAUUUCAUCACAACAAUUAUCA	chrM:6308-6536(+)$1	228	73	104	39.8242
CACCUUCCUCUUCCUCAGCCCCAGCCCCACU	chrX:153596778-153597037(-)$1	259	102	133	39.9468
UGGGGUCAACCUGCCUACCCAGAUUUCUCAU	chr3:47031279-47031551(+)$1	272	8	39	40.1451
cccuccaacccccucaccgcccucuccagga	chr19:6533971-6534245(+)$1	274	154	185	38.5743

#DB
..(((....................)))...	chr5:53342431-53342712(-)$1	1	106	137	35.5513
(((((..........................	chr17:7311174-7311485(+)$1	1	252	283	39.8242
.((((..........................	chrX:73064669-73064891(-)$1	1	109	140	40.0794
(((.((.....................)).)	chr2:27264208-27264549(+)$1	1	198	229	36.0434
((..........................)))	chr10:129922991-129923303(-)$1	1	90	121	38.5743
(((((......................))))	chr1:27481086-27481383(-)$1	1	193	224	37.8181
((((((.....................))))	chr1:151030422-151030740(-)$1	1	247	278	33.3686
((..........................)))	chr20:49546718-49546978(-)$1	1	184	215	38.5743
(((((......................))))	chr5:1333418-1333698(-)$1	1	243	274	37.9835
............................)))	chr11:63858361-63858682(-)$1	1	45	76	38.2685
(((((......................))))	chr11:71943303-71943609(+)$1	1	99	130	37.1919
(((((..........................	chr17:2298364-2298666(-)$1	1	78	109	39.8242
.((((..........................	chr6:44201608-44201920(+)$1	1	78	109	40.0835
..((.......................))..	chr12:57112493-57112719(-)$1	1	138	169	37.5500
((((((....................)))))	chr21:9926693-9926953(-)$1	1	214	245	34.3097
(((((....................))))).	chr2:97557194-97557482(-)$1	1	232	263	34.9322
.((((.......................)))	chr19:50919158-50919483(+)$1	1	235	266	38.3406
(((((.....................)))))	chr1:143407771-143408043(-)$1	1	20	51	36.3776
(((((..........................	chr1:16946908-16947216(-)$1	1	126	157	40.2152
..((((....................)))).	chr14:102247741-102248001(+)$1	1	144	175	34.8158
(((((......................))))	chr10:121355360-121355640(-)$1	1	119	150	37.6417
..(((.......................)))	chr7:64140293-64140666(+)$1	1	17	48	38.9840
((..(((....................))))	chr4:1331477-1331774(+)$1	1	21	52	35.3503
((((........................)))	chr20:62259289-62259593(+)$1	1	131	162	38.2799
((.((((....................))))	chr19:39833783-39834091(+)$1	1	168	199	34.7420
))((((((...................))))	chrX:73065218-73065486(-)$1	1	167	198	32.7207
(((((..........................	chr19:14246397-14246670(-)$1	1	69	100	40.2152
((((.......................))))	chr12:25090871-25091143(-)$1	1	120	151	37.3593
...((..........................	chr7:100064864-100065131(-)$1	1	92	123	39.6191
((..........................)))	chr7:30634763-30635061(+)$1	1	259	290	38.1472
(((((..........................	chr9:140563696-140564022(+)$1	1	201	232	39.1658
(((((..........................	chrX:153690937-153691258(+)$1	1	123	154	39.8242
((..((((...................))))	chr19:19642866-19643184(+)$1	1	197	228	33.0484
.((..........................))	chr7:100068607-100068871(-)$1	1	23	54	38.4195
.((.(..........................	chr16:89450734-89451086(-)$1	1	161	192	39.8349
(.(((..........................	chr1:151030320-151030567(-)$1	1	76	107	40.1377
(((((..........................	chr22:22895684-22895934(-)$1	1	108	139	39.1658
...........................))))	chr9:132252444-132252680(+)$1	1	170	201	37.1036
((((........................)))	chr7:102017517-102017841(+)$1	1	123	154	38.2799
(((((..........................	chr6:35260171-35260442(+)$1	1	60	91	40.2152
.((((.........................)	chr8:145288152-145288471(+)$1	1	91	122	39.4701
(..((.........................)	chr18:34376603-34376903(-)$1	1	130	161	39.1176
.((((..........................	chr2:97542408-97542755(-)$1	1	76	107	40.0794
((((..(((..................))).	chr12:49332407-49332690(-)$1	1	138	169	32.9339
(((((..........................	chr21:47675312-47675630(-)$1	1	68	99	40.2152
((((........................)))	chr19:2758800-2759153(-)$1	1	158	189	38.8037
((((........................)))	chr19:17532860-17533157(+)$1	1	250	281	38.8037
...........................))))	chr16:31509171-31509496(-)$1	1	158	189	37.1036
(((((..........................	chr12:57824511-57824825(-)$1	1	89	120	39.1658
(((((..........................	chr17:7812998-7813327(+)$1	1	267	298	40.2152
(((((..........................	chr22:42318504-42318821(-)$1	1	18	49	39.8242
(((((......................))))	chr17:4848114-4848459(+)$1	1	291	322	37.6417
(((((((....................))))	chr6:5246670-5247013(-)$1	1	150	181	34.8370
(((((..........................	chr9:140563846-140564165(+)$1	1	51	82	39.1658
.((...((...................)).)	chr19:50435809-50436134(+)$1	1	44	75	33.2388
.((((......................))))	chr1:26606968-26607215(+)$1	1	123	154	37.5387
((.((..........................	chr3:47452099-47452366(+)$1	1	156	187	39.7445
(((((((....................))))	chr22:50019748-50020074(-)$1	1	277	308	34.6125
((((.(((..................))).)	chr1:26607590-26607847(+)$1	1	182	213	32.9266
((((.((...................)).))	chr17:73138478-73138777(-)$1	1	99	130	33.1039
(((((..........................	chr7:92291504-92291823(-)$1	1	153	184	39.8888
.((((.....................)))))	chr21:47640711-47640990(-)$1	1	185	216	35.9357
(.(((..........................	chr18:75693110-75693418(-)$1	1	173	204	40.2189
..(((.....................))).)	chr2:231625264-231625661(+)$1	1	179	210	36.6261
(((((..........................	chr19:46283710-46284067(-)$1	1	122	153	40.2152
(((((..........................	chrM:6308-6536(+)$1	1	73	104	39.8242
.((((..........................	chrX:153596778-153597037(-)$1	1	102	133	39.9468
(((((..........................	chr3:47031279-47031551(+)$1	1	8	39	40.1451
((..........................)))	chr19:6533971-6534245(+)$1	1	154	185	38.5743

#PSSM
e : 0.26	f : 0.15	[ : 0.07	h : 0.07	! : 0.07	" : 0.07	g : 0.07	c : 0.05	^ : 0.04	d : 0.04	# : 0.02	= : 0.01	i : 0.01	a : 0.01	
e : 0.24	d : 0.17	f : 0.15	h : 0.07	g : 0.07	^ : 0.04	" : 0.04	! : 0.04	b : 0.04	c : 0.02	[ : 0.02	# : 0.01	= : 0.01	i : 0.01	
e : 0.18	f : 0.15	d : 0.15	^ : 0.10	c : 0.08	h : 0.07	b : 0.05	g : 0.05	! : 0.04	[ : 0.02	= : 0.01	" : 0.01	i : 0.01	
e : 0.18	d : 0.17	f : 0.15	^ : 0.11	c : 0.07	h : 0.07	b : 0.05	g : 0.05	[ : 0.02	! : 0.02	= : 0.01	" : 0.01	i : 0.01	
^ : 0.20	d : 0.17	e : 0.13	f : 0.11	c : 0.08	h : 0.07	b : 0.05	g : 0.05	[ : 0.02	= : 0.01	a : 0.01	! : 0.01	" : 0.01	i : 0.01	
^ : 0.79	d : 0.04	b : 0.02	f : 0.02	c : 0.02	h : 0.01	! : 0.01	g : 0.01	" : 0.01	i : 0.01	
^ : 0.85	c : 0.04	d : 0.02	b : 0.02	f : 0.01	g : 0.01	i : 0.01	
^ : 0.92	c : 0.02	f : 0.01	d : 0.01	b : 0.01	
^ : 0.98	c : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.97	c : 0.01	e : 0.01	
^ : 0.86	c : 0.04	e : 0.02	d : 0.02	f : 0.01	b : 0.01	
^ : 0.57	d : 0.10	c : 0.07	b : 0.05	f : 0.05	e : 0.04	g : 0.04	h : 0.01	= : 0.01	i : 0.01	
^ : 0.42	d : 0.13	e : 0.11	c : 0.08	f : 0.08	b : 0.04	g : 0.04	3 : 0.01	h : 0.01	= : 0.01	i : 0.01	] : 0.01	
^ : 0.40	d : 0.14	e : 0.11	f : 0.08	] : 0.05	c : 0.05	g : 0.04	3 : 0.02	h : 0.01	= : 0.01	b : 0.01	i : 0.01	
^ : 0.37	d : 0.14	e : 0.11	f : 0.10	b : 0.05	3 : 0.04	c : 0.04	g : 0.04	h : 0.01	= : 0.01	] : 0.01	2 : 0.01	i : 0.01	

#score	2607.900652521425
#seq	69
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_CDS_m1_run2.txt

#BEAR
###ccc[eeeeeacccooooooccc]a333eeeee]c	chr11:130005415-130005675(+)$1	260	161	198	15.9770
=====[bb[a[eeeeeooooooeeeee]a]bb22===	chr2:216289717-216289958(-)$1	241	28	65	14.0534
!!ccc!!ccc[bb[bbnnnnnbbbb]ccc22ccc333	chr2:21246311-21246554(-)$1	243	79	116	13.3712
ddd!!ccc[gggggggooooooggggggg]ccc4444	chr19:6706989-6707244(-)$1	255	1	38	15.8757
ffffff!!dddd[cccooooooccc]dddd]ffffff	chr2:54876128-54876390(+)$1	262	90	127	13.9231
B:==========[a[bboooooobba]==========	chr2:216285349-216285595(-)$1	246	208	245	14.4162
!dddd[a!!ccc!!bboooooobb333ccc22a]ddd	chr20:60887683-60887915(-)$1	232	148	185	16.1917
eggggggg[gggggggmmmmggggggg333ggggggg	chr14:39645180-39645393(+)$1	213	44	81	11.6951
b!!dddd!!==========mmmm==========4444	chr2:216259150-216259384(-)$1	234	174	211	12.2962
"dddd[eeeee"""bboooooobb]eeeeedddd]ee	chr2:216279462-216279698(-)$1	236	102	139	14.7493
dd[a!!iiiiiiiiirrrrrrrrriiiiiiiii22a2	chr9:116958144-116958372(+)$1	228	73	110	11.8967
[a[bb!!ccc[a[ddddoooooodddd]a]ccc]bb]	chr7:45928463-45928700(+)$1	237	44	81	13.1615
c!!ffffff!!bb[aooooooa]bb22ffffff22cc	chr20:60889766-60889977(-)$1	211	105	142	12.9121
ggggggg[aeeeeecccnnnnnccc]eeeee22a]gg	chr10:101544348-101544565(+)$1	217	2	39	11.6946
eee[ccc!!dddd[bbnnnnnbbdddd]ccceeeee3	chr10:101558968-101559190(+)$1	222	137	174	12.0755
bb!!eeeee"""cccooooooccc333eeeee333bb	chr17:1648213-1648448(+)$1	235	120	157	14.1598
cccggggggg[bb[bboooooobb]bb]ggggggg::	chr20:31022388-31022665(+)$1	277	31	68	14.1960
b[dddd!!ccc[ddddoooooodddd]cccddddbbe	chr2:216298029-216298264(-)$1	235	151	188	12.6827
c"""eeeeeaccc[bboooooobb]ccc]a]eeeeec	chr8:27463826-27464125(-)$1	299	188	225	16.1440
hhhhhhh[ccc[a[bboooooobb]a]ccchhhhhhh	chr12:57569321-57569571(+)$1	250	154	191	14.2966
eggggggg[gggggggmmmmggggggg333ggggggg	chr14:39645193-39645436(+)$1	243	31	68	11.6951
[==========[a!!annnnna22a]==========]	chr19:6710629-6710868(-)$1	239	179	216	14.6885
bb[ccc[dddd[ccc[aooooooa]cccdddd]cccb	chr9:117044659-117044910(+)$1	251	88	125	13.1611
fff[dddd!!a[a[cccnnnnncccaa333ddddfff	chr10:101590070-101590289(+)$1	219	31	68	12.1146
!dddd[eeeee!!abboooooobb]a22eeeee]ddd	chr12:57554577-57554828(+)$1	251	160	197	14.8291
cceeeee!!dddd[bboooooobb]dddd22eeeee:	chr3:120393662-120393907(-)$1	245	110	147	14.5788
d[a[dddd"""a[cccooooooccc]a4444dddda]	chr16:67980243-67980529(-)$1	286	166	203	15.6690
[==========[a[bboooooobba]==========3	chr2:216285306-216285549(-)$1	243	163	200	19.2252
dffffff####eeeeeooooooeeeeeffffff]ddd	chr3:49050512-49050767(+)$1	255	10	47	12.2955
gggggccc!!ccc!!bbnnnnnbb]ccc22ccc]ggg	chr21:46925736-46925969(+)$1	233	9	46	13.4059
g==========eeeeennnnneeeee4444=======	chr20:34302006-34302234(-)$1	228	107	144	12.6855
f"""cccbbgggggggooooooggggggg]bb]ccc]	chr1:230846008-230846256(-)$1	248	202	239	14.5405
"ffffff!!bb"""bboooooobb]bb]ffffff333	chr3:52830535-52830759(+)$1	224	167	204	15.1898
cc[bb!!eeeeeddddoooooodddd]eeeee22bbc	chr2:216299380-216299608(-)$1	228	116	153	12.6815
:a[iiiiiiiii!!cccmmmmccc22iiiiiiiii]a	chr14:101194632-101194842(+)$1	210	169	206	12.3873
eeee[ccc[dddd[bboooooobbdddd]ccc]eeee	chr3:133474112-133474368(+)$1	256	132	169	15.1120
ggggg"""a[ffffffooooooffffff]aggggggg	chr16:74926285-74926556(-)$1	271	171	208	14.3706
ddd[iiiiiiiii[bboooooobb]iiiiiiiii333	chr9:124079267-124079577(+)$1	310	257	294	18.0250
iiiiiii"""ccc[cccnnnnnccc]ccc]iiiiiii	chr2:216262423-216262661(-)$1	238	79	116	14.2880
ccc####eeeee[cccooooooccc]eeeee]ccc22	chr12:57574081-57574356(+)$1	275	158	195	15.0033
ggggggg!!dddd[cccmmmmcccdddd22ggggggg	chr19:6707129-6707378(-)$1	249	128	165	11.6804
bb[eeeee[ccc[cccooooooccc22ccc]eeeee]	chr12:57587301-57587539(+)$1	238	169	206	15.2521
gggg!!ccc!!ccccccnnnnnccc]ccc22ccc888	chr12:9220688-9220892(-)$1	204	116	153	12.0663
ff!!eeeeeccc!!bboooooobb22ccc22eeeee]	chr11:129979306-129979560(+)$1	254	19	56	16.1322
ba[==========[bboooooobb==========]a]	chr8:22273191-22273528(+)$1	337	230	267	18.8666
oooeeeeeeeeee!!aooooooa22eeeeeggggggg	chr17:48797010-48797278(+)$1	268	62	99	13.2939
#bb"""ffffff[cccooooooccc]ffffff333bb	chr11:65835308-65835619(+)$1	311	118	155	14.1837
ddd!!bb[dddd!!bboooooobb22ddddbbddddc	chr2:54872397-54872650(+)$1	253	157	194	13.8864
ee####ccc[a!!cccooooooccc22a]ccc22eee	chr2:216269141-216269440(-)$1	299	236	273	15.2565
b!!ccc"""gggggggmmmmggggggg333ccc4444	chr4:74318018-74318226(+)$1	208	13	50	12.2171
D==========[a[bboooooobba]==========:	chr2:216285295-216285506(-)$1	211	120	157	17.2170
$$$$$ccc!!ddddbboooooobb]dddd22ccc333	chr21:46929941-46930159(+)$1	218	124	161	15.5151
fffff===========oooooo===========6666	chr4:166300258-166300600(+)$1	342	171	208	15.2435
b[ccc[bb[dddd[bboooooobbdddd]bb]ccc]b	chr16:46956088-46956449(+)$1	361	213	250	14.6433

#otherMatches

#Seq PSSM
UUCCACCCCUUCCCAGCCCUACCUGAGAACGAAGGUG	chr11:130005415-130005675(+)$1	260	161	198	15.9770
GUGUCACAGACAGUGGUGUGGUCUACUCUGUGGGGAU	chr2:216289717-216289958(-)$1	241	28	65	14.0534
UGGAUUACAGUUGCAAAUAUCUUCAUCUGGAGUCAUU	chr2:21246311-21246554(-)$1	243	79	116	13.3712
GGCAUGCGGGAGAACCCCAUGAGGUUCUCGUGCCAGC	chr19:6706989-6707244(-)$1	255	1	38	15.8757
CAGGUUAUUCCAGCUCAACCGGGAGGUGGACGACCUG	chr2:54876128-54876390(+)$1	262	90	127	13.9231
CCCUAUUUCCCUAGAUGAGUUUGCACAGGGGGAAUGG	chr2:216285349-216285595(-)$1	246	208	245	14.4162
AGCGUGGAGCAGGACAAUGAUCUGGAGCUGGCCGACG	chr20:60887683-60887915(-)$1	232	148	185	16.1917
GGGUGCGACUGUGUGUGUCUACAUAUGAUUUUGCACU	chr14:39645180-39645393(+)$1	213	44	81	11.6951
CAAUAAGAGUGGGGAUUAGCAUCUUAAUCCCCAGAUG	chr2:216259150-216259384(-)$1	234	174	211	12.2962
AUCUCACAUUUCCAAGUACAUUCUCAGGUGGAGACCU	chr2:216279462-216279698(-)$1	236	102	139	14.7493
CACCUUGUCUGUGUCUUCCAGGGUGACAUGGGCUUGC	chr9:116958144-116958372(+)$1	228	73	110	11.8967
CGCUGCCGGGGGAGCAGCAACCUCUGCACGCCCUCAC	chr7:45928463-45928700(+)$1	237	44	81	13.1615
CGGGGGGCUGCCAGUAAGGUGGGUGAGAGUCCCAGGG	chr20:60889766-60889977(-)$1	211	105	142	12.9121
CCUUUGGUCUCCAGAAUUCCUCAUUCCUGGACAGUCC	chr10:101544348-101544565(+)$1	217	2	39	11.6946
UUGUGAGUCCUCAGCUGCUGAAGUGAGUCUCCAGGCC	chr10:101558968-101559190(+)$1	222	137	174	12.0755
GCAAGGCCCCUGCUCCGUGGUGAGGCUGGGCUGAAGU	chr17:1648213-1648448(+)$1	235	120	157	14.1598
GGCGGCCACCACUGCCAUCGGAGGGGGGGGUGGCCCG	chr20:31022388-31022665(+)$1	277	31	68	14.1960
GACUCCAUGAUCUGGGACUGUACCUGCAUCGGGGCUG	chr2:216298029-216298264(-)$1	235	151	188	12.6827
GAAACAGACCUGCAUGAAGUUCUACGCACGCGUCUGC	chr8:27463826-27464125(-)$1	299	188	225	16.1440
UGCCGCAGCCUGGGUGAGACAACAGUGAGGUGUGGUG	chr12:57569321-57569571(+)$1	250	154	191	14.2966
GGGUGCGACUGUGUGUGUCUACAUAUGAUUUUGCACU	chr14:39645193-39645436(+)$1	243	31	68	11.6951
CUCCGUGUGGGUGGACGUCAAGGACUCCUGCGUGGGC	chr19:6710629-6710868(-)$1	239	179	216	14.6885
CUAUCAAGGACAGCUGGGUGAGAUGGGCGUCCCUGGA	chr9:117044659-117044910(+)$1	251	88	125	13.1611
CUGAUAUCCAGUGUGGAAGAGAUCCCCGAAGAUGCAG	chr10:101590070-101590289(+)$1	219	31	68	12.1146
GGGCGUGGAUGGAUGGCUCACACCGAGACAUCUUUGU	chr12:57554577-57554828(+)$1	251	160	197	14.8291
CAGCUCUCAGGAUCGGCUUUCACUUGUCCACGGAGCA	chr3:120393662-120393907(-)$1	245	110	147	14.5788
CCGUGCCUGGAAGACCUUCAUUGGUGUGUGAAGGCCU	chr16:67980243-67980529(-)$1	286	166	203	15.6690
CCUAUUUCCCUAGAUGAGUUUGCACAGGGGGAAUGGU	chr2:216285306-216285549(-)$1	243	163	200	19.2252
CCUCCAGACCAGGUCUGCUCAAGGACCCUGGGGUGGG	chr3:49050512-49050767(+)$1	255	10	47	12.2955
CAGCAGGUGAGGCUCUGGGCUACACGCCAGGCCAUGC	chr21:46925736-46925969(+)$1	233	9	46	13.4059
UAAUGGCAAGACUUGCAGAGGGUAAGUGUUUCUUGCU	chr20:34302006-34302234(-)$1	228	107	144	12.6855
GUCUGCCCUGCAGGCUGUACAGGGCCUGCUAGUGGCC	chr1:230846008-230846256(-)$1	248	202	239	14.5405
AGGGGGUCUGGCCCAGUGUGAUCUCCCUACCCCCAAC	chr3:52830535-52830759(+)$1	224	167	204	15.1898
CUACCUAGGCAAUGCGUUGGUUUGUACUUGUUAUGGA	chr2:216299380-216299608(-)$1	228	116	153	12.6815
AGAGUGGCUCCUCAGAGGCAGCUUGUAGGGGCCACGC	chr14:101194632-101194842(+)$1	210	169	206	12.3873
GCGGAUGGGACGGACUUCCCCCAGCUGUGUCAACUGU	chr3:133474112-133474368(+)$1	256	132	169	15.1120
CCAGGUAUUGUCCAUCCCUUUUGGUGGAGAUUUGGAU	chr16:74926285-74926556(-)$1	271	171	208	14.3706
UGGCCUGUAGGAUCUUGGAUGGGAUGUUCUGCAGCUC	chr9:124079267-124079577(+)$1	310	257	294	18.0250
CCUUCCUCUAGCUGGGUGUACGACCAAGCCAGGGAGG	chr2:216262423-216262661(-)$1	238	79	116	14.2880
GGCCACCGCCCUGGCCAUCAUGGGUGAGGGCUGCUGG	chr12:57574081-57574356(+)$1	275	158	195	15.0033
CGAGGACGGCAUGCGGGAGAACCCCAUGAGGUUCUCG	chr19:6707129-6707378(-)$1	249	128	165	11.6804
GAGUGAGGCGCACUGGCAUAACCCAUCUGUACCUCAG	chr12:57587301-57587539(+)$1	238	169	206	15.2521
AAGCCACUCACACUCCUCCAAAAGGCAGUCAGAGCUC	chr12:9220688-9220892(-)$1	204	116	153	12.0663
UCUUGCAGCCAAUGCCGGAACAGGAUUUGCUGUUGCU	chr11:129979306-129979560(+)$1	254	19	56	16.1322
GGCGCCCAUGGUGGACGAGAAGGUCAUUGUGGGCUCG	chr8:22273191-22273528(+)$1	337	230	267	18.8666
CAGCCGCCCGAAGGAAGCACCAUGAUUUCGGCCGCGC	chr17:48797010-48797278(+)$1	268	62	99	13.2939
CCUCAGCUCUUCACUGUGUUGCCAGAGAAGAGAACAG	chr11:65835308-65835619(+)$1	311	118	155	14.1837
AUCCAUCAGUUCAACAGGGAUGUGGAGGACGAGAUCG	chr2:54872397-54872650(+)$1	253	157	194	13.8864
GGAAUCUGCAGCCUGCAUCUGAGUACACCGUAUCCCU	chr2:216269141-216269440(-)$1	299	236	273	15.2565
UUAUUGCAGCAGUUUUCUGAAAAACUGAACCAACUUU	chr4:74318018-74318226(+)$1	208	13	50	12.2171
CCUAUUUCCCUAGAUGAGUUUGCACAGGGGGAAUGGU	chr2:216285295-216285506(-)$1	211	120	157	17.2170
CCGUGGGGCUGGCGGGCACCUUCCGCGCCUUCCUGUC	chr21:46929941-46930159(+)$1	218	124	161	15.5151
CGGGUGGCUCCUGGGCGCCGAAGCCCAGGAgcccggg	chr4:166300258-166300600(+)$1	342	171	208	15.2435
GAGGAGUCCUUUGAGCAAUUCAGCCGAGUGAGUCCAC	chr16:46956088-46956449(+)$1	361	213	250	14.6433

#DB
...(((.(((((((((......))).)...))))).)	chr11:130005415-130005675(+)$1	1	161	198	15.9770
(((((.((.(.(((((......))))).).))..)))	chr2:216289717-216289958(-)$1	1	28	65	14.0534
..(((..(((.((.((.....)))).)))..)))...	chr2:21246311-21246554(-)$1	1	79	116	13.3712
(((..(((.(((((((......))))))).)))....	chr19:6706989-6707244(-)$1	1	1	38	15.8757
((((((..((((.(((......))).)))).))))))	chr2:54876128-54876390(+)$1	1	90	127	13.9231
).((((((((((.(.((......))).))))))))))	chr2:216285349-216285595(-)$1	1	208	245	14.4162
.((((.(..(((..((......))...)))..).)))	chr20:60887683-60887915(-)$1	1	148	185	16.1917
((((((((.(((((((....)))))))...)))))))	chr14:39645180-39645393(+)$1	1	44	81	11.6951
(..((((..((((((((((....))))))))))....	chr2:216259150-216259384(-)$1	1	174	211	12.2962
.((((.(((((...((......)).))))))))).))	chr2:216279462-216279698(-)$1	1	102	139	14.7493
((.(..(((((((((.........)))))))))..).	chr9:116958144-116958372(+)$1	1	73	110	11.8967
.(.((..(((.(.((((......)))).).))).)).	chr7:45928463-45928700(+)$1	1	44	81	13.1615
(..((((((..((.(......).))..))))))..))	chr20:60889766-60889977(-)$1	1	105	142	12.9121
(((((((.(((((((((.....))).)))))..).))	chr10:101544348-101544565(+)$1	1	2	39	11.6946
(((.(((..((((.((.....)))))).)))))))).	chr10:101558968-101559190(+)$1	1	137	174	12.0755
((..(((((...(((......)))...)))))...))	chr17:1648213-1648448(+)$1	1	120	157	14.1598
)))(((((((.((.((......)).)).)))))))..	chr20:31022388-31022665(+)$1	1	31	68	14.1960
(.((((..(((.((((......)))).))))))))))	chr2:216298029-216298264(-)$1	1	151	188	12.6827
(...(((((((((.((......)).))).).))))))	chr8:27463826-27464125(-)$1	1	188	225	16.1440
(((((((.(((.(.((......)).).))))))))))	chr12:57569321-57569571(+)$1	1	154	191	14.2966
((((((((.(((((((....)))))))...)))))))	chr14:39645193-39645436(+)$1	1	31	68	11.6951
.((((((((((.(..(.....)..).)))))))))).	chr19:6710629-6710868(-)$1	1	179	216	14.6885
((.(((.((((.(((.(......).))))))).))))	chr9:117044659-117044910(+)$1	1	88	125	13.1611
(((.((((..(.(.(((.....)))))...)))))))	chr10:101590070-101590289(+)$1	1	31	68	12.1146
.((((.(((((..(((......)).)..))))).)))	chr12:57554577-57554828(+)$1	1	160	197	14.8291
))(((((..((((.((......)).))))..))))).	chr3:120393662-120393907(-)$1	1	110	147	14.5788
(.(.((((...(.(((......))).)....))))).	chr16:67980243-67980529(-)$1	1	166	203	15.6690
.((((((((((.(.((......))).)))))))))).	chr2:216285306-216285549(-)$1	1	163	200	19.2252
(((((((....(((((......))))))))))).)))	chr3:49050512-49050767(+)$1	1	10	47	12.2955
((((((((..(((..((.....)).)))..))).)))	chr21:46925736-46925969(+)$1	1	9	46	13.4059
)(((((((((((((((.....)))))....)))))))	chr20:34302006-34302234(-)$1	1	107	144	12.6855
(...((((((((((((......))))))).)).))).	chr1:230846008-230846256(-)$1	1	202	239	14.5405
.((((((..((...((......)).)).))))))...	chr3:52830535-52830759(+)$1	1	167	204	15.1898
((.((..(((((((((......)))).)))))..)))	chr2:216299380-216299608(-)$1	1	116	153	12.6815
.(.(((((((((..(((....)))..))))))))).)	chr14:101194632-101194842(+)$1	1	169	206	12.3873
((((.(((.((((.((......)))))).))).))))	chr3:133474112-133474368(+)$1	1	132	169	15.1120
(((((...(.((((((......)))))).))))))))	chr16:74926285-74926556(-)$1	1	171	208	14.3706
(((.(((((((((.((......)).)))))))))...	chr9:124079267-124079577(+)$1	1	257	294	18.0250
(((((((...(((.(((.....))).))).)))))))	chr2:216262423-216262661(-)$1	1	79	116	14.2880
(((....(((((.(((......))).))))).)))..	chr12:57574081-57574356(+)$1	1	158	195	15.0033
(((((((..((((.(((....)))))))..)))))))	chr19:6707129-6707378(-)$1	1	128	165	11.6804
((.(((((.(((.(((......)))..))).))))).	chr12:57587301-57587539(+)$1	1	169	206	15.2521
((((..(((..((((((.....))).)))..)))...	chr12:9220688-9220892(-)$1	1	116	153	12.0663
((..((((((((..((......))..)))..))))).	chr11:129979306-129979560(+)$1	1	19	56	16.1322
((.((((((((((.((......)))))))))))).).	chr8:22273191-22273528(+)$1	1	230	267	18.8666
...)))))(((((..(......)..)))))(((((((	chr17:48797010-48797278(+)$1	1	62	99	13.2939
.((...((((((.(((......))).))))))...))	chr11:65835308-65835619(+)$1	1	118	155	14.1837
(((..((.((((..((......))..))))))))))(	chr2:54872397-54872650(+)$1	1	157	194	13.8864
((....(((.(..(((......)))..).)))..)))	chr2:216269141-216269440(-)$1	1	236	273	15.2565
(..(((...(((((((....)))))))...)))....	chr4:74318018-74318226(+)$1	1	13	50	12.2171
(((((((((((.(.((......))).)))))))))).	chr2:216285295-216285506(-)$1	1	120	157	17.2170
.....(((..((((((......)).))))..)))...	chr21:46929941-46930159(+)$1	1	124	161	15.5151
((((((((((((((((......)))))))))))....	chr4:166300258-166300600(+)$1	1	171	208	15.2435
(.(((.((.((((.((......)))))).)).))).)	chr16:46956088-46956449(+)$1	1	213	250	14.6433

#PSSM
b : 0.14	d : 0.11	c : 0.11	g : 0.11	f : 0.09	e : 0.09	! : 0.05	[ : 0.05	# : 0.03	" : 0.03	= : 0.01	B : 0.01	h : 0.01	: : 0.01	i : 0.01	o : 0.01	D : 0.01	$ : 0.01	
d : 0.12	g : 0.12	f : 0.11	= : 0.09	! : 0.07	b : 0.07	c : 0.07	a : 0.05	e : 0.05	[ : 0.05	" : 0.03	# : 0.01	: : 0.01	h : 0.01	i : 0.01	o : 0.01	$ : 0.01	
d : 0.12	g : 0.12	[ : 0.12	= : 0.11	f : 0.09	! : 0.09	c : 0.07	e : 0.05	# : 0.03	" : 0.03	h : 0.01	a : 0.01	i : 0.01	o : 0.01	b : 0.01	$ : 0.01	
g : 0.14	= : 0.12	c : 0.09	f : 0.09	d : 0.09	! : 0.07	[ : 0.07	e : 0.07	" : 0.05	b : 0.03	i : 0.03	# : 0.03	a : 0.01	h : 0.01	$ : 0.01	
c : 0.12	= : 0.12	d : 0.12	g : 0.12	e : 0.11	f : 0.09	! : 0.07	i : 0.05	b : 0.03	# : 0.03	h : 0.01	[ : 0.01	" : 0.01	$ : 0.01	
c : 0.16	= : 0.12	e : 0.11	[ : 0.09	! : 0.09	g : 0.09	f : 0.07	d : 0.07	i : 0.05	" : 0.03	# : 0.03	h : 0.01	b : 0.01	
c : 0.14	e : 0.14	= : 0.12	! : 0.09	g : 0.09	i : 0.07	f : 0.07	b : 0.05	d : 0.05	[ : 0.03	" : 0.03	a : 0.01	h : 0.01	# : 0.01	
e : 0.18	c : 0.14	! : 0.14	= : 0.12	b : 0.05	g : 0.05	i : 0.05	[ : 0.05	d : 0.05	" : 0.05	f : 0.03	# : 0.01	
e : 0.16	! : 0.16	[ : 0.12	= : 0.12	c : 0.11	d : 0.05	i : 0.05	" : 0.05	f : 0.03	a : 0.03	g : 0.01	# : 0.01	b : 0.01	
d : 0.14	= : 0.14	e : 0.12	c : 0.12	g : 0.11	! : 0.09	i : 0.05	" : 0.05	a : 0.03	[ : 0.03	# : 0.01	b : 0.01	f : 0.01	
d : 0.16	= : 0.14	c : 0.14	e : 0.12	g : 0.09	[ : 0.07	i : 0.05	! : 0.03	" : 0.03	a : 0.03	f : 0.03	# : 0.01	b : 0.01	
e : 0.14	d : 0.14	c : 0.12	[ : 0.12	g : 0.09	= : 0.07	b : 0.05	" : 0.05	i : 0.05	a : 0.03	! : 0.03	f : 0.03	
d : 0.14	[ : 0.12	a : 0.11	! : 0.11	c : 0.11	e : 0.09	g : 0.09	b : 0.05	= : 0.05	" : 0.03	i : 0.03	f : 0.01	
[ : 0.29	c : 0.18	! : 0.12	g : 0.09	e : 0.07	d : 0.07	a : 0.03	= : 0.03	" : 0.03	i : 0.01	f : 0.01	
b : 0.35	c : 0.27	g : 0.09	e : 0.05	d : 0.05	! : 0.05	= : 0.03	[ : 0.01	i : 0.01	a : 0.01	f : 0.01	
b : 0.38	c : 0.24	g : 0.09	e : 0.05	d : 0.05	= : 0.03	o : 0.03	a : 0.03	r : 0.01	[ : 0.01	f : 0.01	
o : 0.64	c : 0.11	n : 0.07	m : 0.05	b : 0.03	= : 0.01	r : 0.01	d : 0.01	a : 0.01	
o : 0.70	n : 0.16	m : 0.09	= : 0.01	r : 0.01	
o : 0.70	n : 0.16	m : 0.09	= : 0.01	r : 0.01	
o : 0.70	n : 0.16	m : 0.11	r : 0.01	
o : 0.70	n : 0.16	g : 0.05	m : 0.05	r : 0.01	
o : 0.66	n : 0.09	g : 0.05	c : 0.05	b : 0.03	a : 0.03	m : 0.01	r : 0.01	e : 0.01	
b : 0.37	c : 0.25	g : 0.09	e : 0.05	o : 0.05	d : 0.03	m : 0.01	r : 0.01	] : 0.01	2 : 0.01	f : 0.01	a : 0.01	= : 0.01	
b : 0.38	c : 0.25	g : 0.09	d : 0.07	e : 0.05	= : 0.03	2 : 0.03	r : 0.01	a : 0.01	f : 0.01	
c : 0.20	] : 0.20	d : 0.12	g : 0.09	2 : 0.07	e : 0.05	b : 0.05	= : 0.05	a : 0.05	3 : 0.03	i : 0.01	f : 0.01	
] : 0.22	d : 0.16	2 : 0.11	e : 0.09	g : 0.09	a : 0.07	= : 0.05	c : 0.05	3 : 0.03	i : 0.03	b : 0.03	f : 0.01	
d : 0.16	c : 0.12	e : 0.11	= : 0.11	g : 0.09	] : 0.07	2 : 0.07	a : 0.05	i : 0.05	3 : 0.03	b : 0.03	f : 0.03	4 : 0.01	
c : 0.20	d : 0.12	= : 0.12	e : 0.11	3 : 0.09	] : 0.09	f : 0.07	i : 0.05	g : 0.03	4 : 0.03	2 : 0.01	a : 0.01	
c : 0.16	= : 0.12	e : 0.12	3 : 0.09	d : 0.09	] : 0.09	f : 0.07	g : 0.05	i : 0.05	a : 0.03	4 : 0.03	2 : 0.03	
2 : 0.12	= : 0.12	c : 0.12	e : 0.12	3 : 0.09	] : 0.09	f : 0.07	d : 0.05	i : 0.05	a : 0.03	4 : 0.03	g : 0.01	b : 0.01	
= : 0.14	c : 0.12	e : 0.11	2 : 0.11	g : 0.11	b : 0.07	d : 0.07	i : 0.07	f : 0.07	] : 0.05	h : 0.01	4 : 0.01	
e : 0.16	c : 0.16	= : 0.14	g : 0.11	f : 0.09	d : 0.09	i : 0.07	b : 0.05	2 : 0.03	] : 0.03	h : 0.01	
c : 0.16	= : 0.14	e : 0.12	g : 0.11	d : 0.09	2 : 0.07	f : 0.07	i : 0.07	] : 0.05	3 : 0.03	a : 0.01	h : 0.01	
e : 0.12	c : 0.12	= : 0.11	g : 0.11	2 : 0.09	] : 0.09	d : 0.09	4 : 0.05	i : 0.05	f : 0.03	3 : 0.03	a : 0.01	h : 0.01	6 : 0.01	
e : 0.14	g : 0.12	= : 0.11	3 : 0.11	d : 0.09	c : 0.07	4 : 0.05	] : 0.05	b : 0.05	f : 0.03	2 : 0.03	i : 0.03	h : 0.01	8 : 0.01	6 : 0.01	
e : 0.14	g : 0.12	= : 0.11	b : 0.09	3 : 0.07	d : 0.07	] : 0.05	4 : 0.05	a : 0.05	c : 0.05	f : 0.03	: : 0.01	h : 0.01	i : 0.01	2 : 0.01	8 : 0.01	6 : 0.01	
g : 0.12	] : 0.12	3 : 0.11	c : 0.09	e : 0.07	b : 0.07	= : 0.05	4 : 0.05	d : 0.05	: : 0.05	f : 0.03	2 : 0.03	h : 0.01	a : 0.01	i : 0.01	8 : 0.01	6 : 0.01	

#score	767.1713660044887
#seq	54
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_UTR_m3_run1.txt

#BEAR
gggggggpppppppggggg	chr3:184104192-184104459(+)$1	267	96	115	14.6361
:ffffffpppppppfffff	chr1:222838680-222839098(+)$1	418	201	220	13.6368
eeeddddpppppppdddd8	chr19:53121991-53122300(-)$1	309	254	273	13.2306
[bb[cccpppppppccc]b	chr16:22360481-22360773(-)$1	292	172	191	13.9318
dffffffpppppppfffff	chr17:66540278-66540534(+)$1	256	169	188	14.0933
dd!!cccpppppppccc33	chr19:19135614-19135869(-)$1	255	43	62	14.4105
b!!a[bbpppppppbb]a2	chr1:203769229-203769474(+)$1	245	115	134	13.0701
ee[ddddpppppppdddd]	chr16:68600769-68601016(+)$1	247	49	68	13.8928
cc[ddddpppppppdddd]	chr18:6031580-6031820(-)$1	240	178	197	14.1557
cceeeeepppppppeeeee	chr1:70716552-70716812(+)$1	260	184	203	14.3498
:ffffffpppppppfffff	chr10:38408571-38408802(+)$1	231	193	212	13.6368
ffffffapppppppa]fff	chr16:89726432-89726736(+)$1	304	6	25	13.9306
:ffffffpppppppfffff	chr18:32917422-32917688(-)$1	266	34	53	13.6368
eeeecccpppppppccc44	chr20:44517263-44517522(-)$1	259	6	25	14.2173
:bb[cccpppppppccc22	chr7:99631885-99632134(+)$1	249	66	85	13.2110
ee[ddddpppppppdddd]	chr16:68600693-68600950(+)$1	257	125	144	13.8928
#ffffffpppppppfffff	chr16:89350300-89350663(-)$1	363	93	112	14.2761
cceeeeepppppppeeeee	chr3:42679061-42679310(+)$1	249	148	167	14.3498
ffffcccpppppppccc]f	chr3:121410724-121410945(-)$1	221	49	68	14.4621
::eeeeepppppppeeeee	chr3:42680650-42680952(+)$1	302	205	224	12.8865
$$$ddddpppppppdddd5	chr9:117073666-117073897(+)$1	231	108	127	12.6059
!ffffffpppppppfffff	chr12:133635897-133636186(+)$1	289	190	209	14.3257
gggggggpppppppggggg	chr6:64395652-64395902(+)$1	250	20	39	14.6361
gggggggpppppppggggg	chrX:19002522-19002751(-)$1	229	155	174	14.6361
:ffffffpppppppfffff	chr15:34817814-34818054(-)$1	240	186	205	13.6368
dddd[bbpppppppbb]dd	chr7:99632966-99633210(+)$1	244	38	57	12.5668
::eeeeepppppppeeeee	chr3:42680752-42681025(+)$1	273	103	122	12.8865
eeeee[apppppppaeeee	chr8:48352825-48353106(+)$1	281	99	118	13.9312
gggggggpppppppggggg	chr1:15987258-15987519(+)$1	261	213	232	14.6361
$$$ddddpppppppdddd5	chr9:117073584-117073833(+)$1	249	190	209	12.6059
f!!cccapppppppa]ccc	chr6:3302970-3303235(-)$1	265	60	79	13.9996
dddddddpppppppdddd]	chr7:99633294-99633539(+)$1	245	17	36	13.4761
bb[ddddpppppppdddd]	chr14:90870970-90871260(+)$1	290	194	213	13.9111
$ccc[bbpppppppbb]cc	chr7:151859939-151860200(-)$1	261	211	230	13.0868
fff[cccpppppppcccff	chr17:57777279-57777538(-)$1	259	48	67	14.4482
###ddddpppppppdddd2	chr2:130832990-130833243(-)$1	253	148	167	13.7353
i:eeeeepppppppeeeee	chr16:25251642-25251924(-)$1	282	130	149	13.4523
c[a[cccpppppppccc]a	chr17:20799308-20799587(+)$1	279	233	252	14.5309
ccc[cccpppppppccc]c	chr12:76444303-76444533(-)$1	230	110	129	14.5581
gggggggpppppppggggg	chr1:111490320-111490601(-)$1	281	176	195	14.6361
iiiiiiipppppppiiiii	chr11:116746894-116747176(-)$1	282	157	176	14.2672
d[eeeeepppppppeeeee	chr16:8722628-8722870(+)$1	242	59	78	14.2315
cc[ddddpppppppddddc	chr16:24801103-24801354(+)$1	251	26	45	14.0042
!!eeeeepppppppeeeee	chr2:234376966-234377206(+)$1	240	200	219	14.4657
iiiiiiipppppppiiiii	chr6:150001079-150001345(-)$1	266	223	242	14.2672
gggggggpppppppggggg	chrX:30877660-30877895(-)$1	235	115	134	14.6361
''eeeeepppppppeeeee	chr3:184105618-184105860(+)$1	242	115	134	13.3191
bb"""bbpppppppbb333	chr16:24802375-24802648(+)$1	273	53	72	13.0094
cffffffpppppppfffff	chr7:43671586-43671848(-)$1	262	26	45	14.2495
gggggggpppppppggggg	chr8:9605472-9605788(+)$1	316	190	209	14.6361
ffff[bbpppppppbb22f	chr2:48025943-48026216(+)$1	273	188	207	12.8379
gg[ddddpppppppdddd]	chr6:56989447-56989736(+)$1	289	198	217	14.1589
gggggggpppppppggggg	chr6:111694435-111694701(-)$1	266	14	33	14.6361
:ccccccpppppppccc]c	chr9:6792936-6793233(+)$1	297	39	58	13.8146
::eeeeepppppppeeeee	chr6:155154057-155154294(+)$1	237	97	116	12.8865
bbeeeeepppppppeeeee	chr1:70716365-70716657(+)$1	292	52	71	14.1053
[bb[cccpppppppccc]b	chr13:45150555-45150887(-)$1	332	304	323	13.9318
gggggggpppppppggggg	chr1:203767971-203768206(+)$1	235	80	99	14.6361
dd!!cccpppppppccc]d	chr4:40122577-40122805(+)$1	228	121	140	14.1775
::eeeeepppppppeeeee	chr9:79922788-79923112(+)$1	324	8	27	12.8865
iiiiiiipppppppiiiii	chr1:89225867-89226116(+)$1	249	198	217	14.2672
Effffffpppppppfffff	chr15:34672969-34673202(-)$1	233	37	56	13.5265
:ffffffpppppppfffff	chr17:37618167-37618456(+)$1	289	221	240	13.6368

#otherMatches

#Seq PSSM
GCCAACCAAUGUGAGGUUG	chr3:184104192-184104459(+)$1	267	96	115	14.6361
CAGGCUCUAGAGAUGAGCC	chr1:222838680-222839098(+)$1	418	201	220	13.6368
UCUGGACUUUCACUGUCCC	chr19:53121991-53122300(-)$1	309	254	273	13.2306
CAGUAAGAGCCUGCCUUUC	chr16:22360481-22360773(-)$1	292	172	191	13.9318
UGAUUUAUAUACAUUAAAU	chr17:66540278-66540534(+)$1	256	169	188	14.0933
UUAUGGCCUGCAAUGCCUA	chr19:19135614-19135869(-)$1	255	43	62	14.4105
ACCCAGGUUGCCAUCCAGU	chr1:203769229-203769474(+)$1	245	115	134	13.0701
UGCUUGGCCUAGAUCCAGC	chr16:68600769-68601016(+)$1	247	49	68	13.8928
cccuggucaucccagccaa	chr18:6031580-6031820(-)$1	240	178	197	14.1557
GCUUCAUAACAAAAAUGAA	chr1:70716552-70716812(+)$1	260	184	203	14.3498
CAGGAUUUUUGAAUAAUCC	chr10:38408571-38408802(+)$1	231	193	212	13.6368
aaagcucacuaaacgcagc	chr16:89726432-89726736(+)$1	304	6	25	13.9306
GGCACUCUCAAUAUGGGUG	chr18:32917422-32917688(-)$1	266	34	53	13.6368
ACAGUGCCAUCCCUGCAGA	chr20:44517263-44517522(-)$1	259	6	25	14.2173
UAGUCACAUCAGCAGUGUU	chr7:99631885-99632134(+)$1	249	66	85	13.2110
UGCUUGGCCUAGAUCCAGC	chr16:68600693-68600950(+)$1	257	125	144	13.8928
AUUUUUAAAGAAGAUAAAG	chr16:89350300-89350663(-)$1	363	93	112	14.2761
GAAAGUGAUCAGAGCACUU	chr3:42679061-42679310(+)$1	249	148	167	14.3498
GCUGUUGAUAAAACCAAUC	chr3:121410724-121410945(-)$1	221	49	68	14.4621
CCUCAUUGAUAAGAAAUGG	chr3:42680650-42680952(+)$1	302	205	224	12.8865
GCCCUUGUGCUCAUCAGGU	chr9:117073666-117073897(+)$1	231	108	127	12.6059
AUGGGUACCAAAAAUACCC	chr12:133635897-133636186(+)$1	289	190	209	14.3257
GAUGAGCCACCAUUGUUCA	chr6:64395652-64395902(+)$1	250	20	39	14.6361
CCGUUGCUGAUUUCGCAGC	chrX:19002522-19002751(-)$1	229	155	174	14.6361
AAUAUUAGACCAAAUAAUG	chr15:34817814-34818054(-)$1	240	186	205	13.6368
UCAUCUUGAAGAAAAAUAU	chr7:99632966-99633210(+)$1	244	38	57	12.5668
CCUCAUUGAUAAGAAAUGG	chr3:42680752-42681025(+)$1	273	103	122	12.8865
GCAUGAGGAAUGUGCCAUG	chr8:48352825-48353106(+)$1	281	99	118	13.9312
CUUCAGAAAAUACAUCUGA	chr1:15987258-15987519(+)$1	261	213	232	14.6361
GCCCUUGUGCUCAUCAGGU	chr9:117073584-117073833(+)$1	249	190	209	12.6059
cuuucucucauucuguagg	chr6:3302970-3303235(-)$1	265	60	79	13.9996
AUGUGGCUGGCUGUGCCAU	chr7:99633294-99633539(+)$1	245	17	36	13.4761
UUCUGUUUCUAUAUAGCAA	chr14:90870970-90871260(+)$1	290	194	213	13.9111
CAGCAGCACCUCCAGUAGC	chr7:151859939-151860200(-)$1	261	211	230	13.0868
uggugugaaagagacaccc	chr17:57777279-57777538(-)$1	259	48	67	14.4482
GUUGCGGGAAGAAAUUGCC	chr2:130832990-130833243(-)$1	253	148	167	13.7353
ACUUCUCAAAUAUGGAGAA	chr16:25251642-25251924(-)$1	282	130	149	13.4523
ACGUCACUGAACCUGUGCC	chr17:20799308-20799587(+)$1	279	233	252	14.5309
CUGAAGCUAUCCUUGCUGC	chr12:76444303-76444533(-)$1	230	110	129	14.5581
AUUCACAUAUGACUUGUGA	chr1:111490320-111490601(-)$1	281	176	195	14.6361
GUCCUCUUGGCCAUGGAGG	chr11:116746894-116747176(-)$1	282	157	176	14.2672
UCUGCUGAGACAGGCAGCA	chr16:8722628-8722870(+)$1	242	59	78	14.2315
UGGCAUUAAUAUUCAGUGC	chr16:24801103-24801354(+)$1	251	26	45	14.0042
GAGCUCCUGCACCUGGAGC	chr2:234376966-234377206(+)$1	240	200	219	14.4657
GAUAUUAAACCUGAUAAUA	chr6:150001079-150001345(-)$1	266	223	242	14.2672
CUAGAAGAUCAUUACUUUU	chrX:30877660-30877895(-)$1	235	115	134	14.6361
GUGCACUGUGAGAAGGUGC	chr3:184105618-184105860(+)$1	242	115	134	13.3191
CAAAGAGGAGAAGGCUGCA	chr16:24802375-24802648(+)$1	273	53	72	13.0094
ugauuucuugaaauggaau	chr7:43671586-43671848(-)$1	262	26	45	14.2495
CAUGGUGCAGACCCCACCA	chr8:9605472-9605788(+)$1	316	190	209	14.6361
UGAGAGCUUUCUCUGCCCC	chr2:48025943-48026216(+)$1	273	188	207	12.8379
AGAGCAUUCAGAGUAUGUG	chr6:56989447-56989736(+)$1	289	198	217	14.1589
UUUCAGAUCCAGGCUUUGA	chr6:111694435-111694701(-)$1	266	14	33	14.6361
UGCCCUAACCAUCAUGGAG	chr9:6792936-6793233(+)$1	297	39	58	13.8146
GAUUUUGAUGACCGCAGAA	chr6:155154057-155154294(+)$1	237	97	116	12.8865
GUGAUUCACUAAGAGAAUC	chr1:70716365-70716657(+)$1	292	52	71	14.1053
UUGGCCGGAGAAGGUGGGC	chr13:45150555-45150887(-)$1	332	304	323	13.9318
AUUUUCUUAACUUUAGAGA	chr1:203767971-203768206(+)$1	235	80	99	14.6361
GUAGAACCACAAACGUUAG	chr4:40122577-40122805(+)$1	228	121	140	14.1775
ACUGCAGUUAAAUUCUGCA	chr9:79922788-79923112(+)$1	324	8	27	12.8865
GUAGUUAAUAAAUGUAACU	chr1:89225867-89226116(+)$1	249	198	217	14.2672
GUGAGCUCUUCUAUAGCUC	chr15:34672969-34673202(-)$1	233	37	56	13.5265
AGCCGUCAUCGGGAGGCGG	chr17:37618167-37618456(+)$1	289	221	240	13.6368

#DB
(((((((.......)))))	chr3:184104192-184104459(+)$1	1	96	115	14.6361
.((((((.......)))))	chr1:222838680-222839098(+)$1	1	201	220	13.6368
(((((((.......)))).	chr19:53121991-53122300(-)$1	1	254	273	13.2306
.((.(((.......))).)	chr16:22360481-22360773(-)$1	1	172	191	13.9318
(((((((.......)))))	chr17:66540278-66540534(+)$1	1	169	188	14.0933
((..(((.......)))..	chr19:19135614-19135869(-)$1	1	43	62	14.4105
(..(.((.......)).).	chr1:203769229-203769474(+)$1	1	115	134	13.0701
((.((((.......)))).	chr16:68600769-68601016(+)$1	1	49	68	13.8928
((.((((.......)))).	chr18:6031580-6031820(-)$1	1	178	197	14.1557
(((((((.......)))))	chr1:70716552-70716812(+)$1	1	184	203	14.3498
.((((((.......)))))	chr10:38408571-38408802(+)$1	1	193	212	13.6368
(((((((.......).)))	chr16:89726432-89726736(+)$1	1	6	25	13.9306
.((((((.......)))))	chr18:32917422-32917688(-)$1	1	34	53	13.6368
(((((((.......)))..	chr20:44517263-44517522(-)$1	1	6	25	14.2173
.((.(((.......)))..	chr7:99631885-99632134(+)$1	1	66	85	13.2110
((.((((.......)))).	chr16:68600693-68600950(+)$1	1	125	144	13.8928
.((((((.......)))))	chr16:89350300-89350663(-)$1	1	93	112	14.2761
(((((((.......)))))	chr3:42679061-42679310(+)$1	1	148	167	14.3498
(((((((.......))).)	chr3:121410724-121410945(-)$1	1	49	68	14.4621
..(((((.......)))))	chr3:42680650-42680952(+)$1	1	205	224	12.8865
...((((.......)))).	chr9:117073666-117073897(+)$1	1	108	127	12.6059
.((((((.......)))))	chr12:133635897-133636186(+)$1	1	190	209	14.3257
(((((((.......)))))	chr6:64395652-64395902(+)$1	1	20	39	14.6361
(((((((.......)))))	chrX:19002522-19002751(-)$1	1	155	174	14.6361
.((((((.......)))))	chr15:34817814-34818054(-)$1	1	186	205	13.6368
((((.((.......)).))	chr7:99632966-99633210(+)$1	1	38	57	12.5668
..(((((.......)))))	chr3:42680752-42681025(+)$1	1	103	122	12.8865
(((((.(.......)))))	chr8:48352825-48353106(+)$1	1	99	118	13.9312
(((((((.......)))))	chr1:15987258-15987519(+)$1	1	213	232	14.6361
...((((.......)))).	chr9:117073584-117073833(+)$1	1	190	209	12.6059
(..((((.......).)))	chr6:3302970-3303235(-)$1	1	60	79	13.9996
(((((((.......)))).	chr7:99633294-99633539(+)$1	1	17	36	13.4761
((.((((.......)))).	chr14:90870970-90871260(+)$1	1	194	213	13.9111
.(((.((.......)).))	chr7:151859939-151860200(-)$1	1	211	230	13.0868
(((.(((.......)))))	chr17:57777279-57777538(-)$1	1	48	67	14.4482
...((((.......)))).	chr2:130832990-130833243(-)$1	1	148	167	13.7353
).(((((.......)))))	chr16:25251642-25251924(-)$1	1	130	149	13.4523
(.(.(((.......))).)	chr17:20799308-20799587(+)$1	1	233	252	14.5309
(((.(((.......))).)	chr12:76444303-76444533(-)$1	1	110	129	14.5581
(((((((.......)))))	chr1:111490320-111490601(-)$1	1	176	195	14.6361
(((((((.......)))))	chr11:116746894-116747176(-)$1	1	157	176	14.2672
(.(((((.......)))))	chr16:8722628-8722870(+)$1	1	59	78	14.2315
((.((((.......)))))	chr16:24801103-24801354(+)$1	1	26	45	14.0042
..(((((.......)))))	chr2:234376966-234377206(+)$1	1	200	219	14.4657
(((((((.......)))))	chr6:150001079-150001345(-)$1	1	223	242	14.2672
(((((((.......)))))	chrX:30877660-30877895(-)$1	1	115	134	14.6361
..(((((.......)))))	chr3:184105618-184105860(+)$1	1	115	134	13.3191
((...((.......))...	chr16:24802375-24802648(+)$1	1	53	72	13.0094
(((((((.......)))))	chr7:43671586-43671848(-)$1	1	26	45	14.2495
(((((((.......)))))	chr8:9605472-9605788(+)$1	1	190	209	14.6361
((((.((.......))..)	chr2:48025943-48026216(+)$1	1	188	207	12.8379
((.((((.......)))).	chr6:56989447-56989736(+)$1	1	198	217	14.1589
(((((((.......)))))	chr6:111694435-111694701(-)$1	1	14	33	14.6361
.((((((.......))).)	chr9:6792936-6793233(+)$1	1	39	58	13.8146
..(((((.......)))))	chr6:155154057-155154294(+)$1	1	97	116	12.8865
))(((((.......)))))	chr1:70716365-70716657(+)$1	1	52	71	14.1053
.((.(((.......))).)	chr13:45150555-45150887(-)$1	1	304	323	13.9318
(((((((.......)))))	chr1:203767971-203768206(+)$1	1	80	99	14.6361
((..(((.......))).)	chr4:40122577-40122805(+)$1	1	121	140	14.1775
..(((((.......)))))	chr9:79922788-79923112(+)$1	1	8	27	12.8865
(((((((.......)))))	chr1:89225867-89226116(+)$1	1	198	217	14.2672
(((((((.......)))))	chr15:34672969-34673202(-)$1	1	37	56	13.5265
.((((((.......)))))	chr17:37618167-37618456(+)$1	1	221	240	13.6368

#PSSM
: : 0.17	g : 0.15	c : 0.11	d : 0.09	e : 0.07	f : 0.07	b : 0.06	i : 0.06	$ : 0.04	[ : 0.03	# : 0.03	! : 0.03	' : 0.01	E : 0.01	
f : 0.22	g : 0.15	c : 0.11	b : 0.09	e : 0.07	: : 0.07	d : 0.06	! : 0.04	i : 0.04	$ : 0.03	[ : 0.03	# : 0.01	' : 0.01	
f : 0.22	e : 0.22	g : 0.14	[ : 0.09	! : 0.06	b : 0.04	c : 0.04	i : 0.04	$ : 0.03	d : 0.03	# : 0.01	a : 0.01	" : 0.01	
f : 0.20	e : 0.20	d : 0.19	g : 0.14	[ : 0.09	c : 0.04	i : 0.04	! : 0.03	a : 0.01	" : 0.01	
c : 0.19	e : 0.19	f : 0.17	d : 0.17	g : 0.14	[ : 0.06	i : 0.04	" : 0.01	
c : 0.19	f : 0.17	d : 0.17	e : 0.17	g : 0.14	b : 0.07	i : 0.04	[ : 0.01	
d : 0.17	c : 0.17	e : 0.17	f : 0.15	g : 0.14	b : 0.07	a : 0.04	i : 0.04	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
d : 0.17	c : 0.17	e : 0.17	f : 0.15	g : 0.14	b : 0.07	a : 0.04	i : 0.04	
e : 0.19	d : 0.17	c : 0.17	f : 0.15	g : 0.14	b : 0.07	i : 0.04	] : 0.03	
c : 0.19	e : 0.19	f : 0.17	d : 0.17	g : 0.14	] : 0.04	i : 0.04	3 : 0.01	2 : 0.01	
f : 0.19	d : 0.19	e : 0.19	g : 0.14	] : 0.11	i : 0.04	3 : 0.03	2 : 0.03	c : 0.03	a : 0.01	4 : 0.01	
f : 0.22	e : 0.19	g : 0.14	] : 0.09	c : 0.07	2 : 0.04	i : 0.04	b : 0.03	3 : 0.03	5 : 0.03	d : 0.03	8 : 0.01	4 : 0.01	a : 0.01	

#score	874.7997542543716
#seq	63
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_CDS_m3_run2.txt

#BEAR
[ccc[dddd[ddddnnnnndddddddd]ccc2	chr22:20050697-20050991(+)$1	294	75	107	10.6775
cc[addddddddoooooodddd22dddd4444	chr11:62294969-62295212(-)$1	243	80	112	11.5058
ccc!!eeeee!!bbnnnnnbb22eeeee22cc	chr11:71725591-71725842(-)$1	251	31	63	9.7688
dddd[a!!bb[cccnnnnncccbb22adddd]	chr11:71725178-71725442(-)$1	264	71	103	10.6409
#ccc!!bb[bboooooobb]bb22ccc333a]	chr16:89350307-89350602(-)$1	295	94	126	9.2997
e[eeeee[a"""ccclllccc333a]eeeee]	chr16:89348867-89349114(-)$1	247	44	76	12.1947
bb[ddddccc[ddddmmmmdddd]ccc]dddd	chr8:94745836-94746125(-)$1	289	17	49	10.2736
ddccc[ccc[bb[bboooooobb]bb4444cc	chr16:89347792-89348081(-)$1	289	245	277	8.9267
cccdddd"""cccooooooccc22dddd5555	chr12:6709369-6709613(-)$1	244	172	204	11.1728
"a[===========lll===========]a]c	chr8:94747774-94748010(-)$1	236	16	48	10.1851
eeeee!!ccc!!bboooooobb22ccc]eeee	chrX:153592597-153592830(-)$1	233	155	187	12.5625
ee"""dddd!!ddddllldddd]dddd]eeee	chr11:62297644-62297878(-)$1	234	160	192	11.2477
####==========lll==========333ff	chr8:94747717-94747931(-)$1	214	178	210	10.6082
eee[bb!!a[ddddnnnnndddda]bb]eeee	chr16:2814224-2814480(+)$1	256	142	174	10.4201
bbdddd!!bb[cccnnnnnccc]bb22dddd=	chr8:144999533-144999816(-)$1	283	61	93	10.7356
e[bb!!ccc[cccooooooccc]cccbb]eee	chr19:39138284-39138537(+)$1	253	145	177	11.2225
e[dddd[bb[ddddnnnnndddd]bb]dddd]	chr8:144994942-144995174(-)$1	232	37	69	11.0430
gg"""ccc####bboooooobb4444ccc333	chr5:71491920-71492210(+)$1	290	72	104	12.6262
+dddd$$$$$cccooooooccc333dddd>>>	chr11:62292083-62292350(-)$1	267	123	155	12.5850
[dddd[ccc"""bboooooobb4444ccc]dd	chr11:71725390-71725668(-)$1	278	212	244	12.9587
hh:eeeee!!cccooooooccc22eeeee:ff	chr8:94747530-94747780(-)$1	250	106	138	10.2747
b####dddd!!ddddmmmmdddd4444dddd3	chr12:125396249-125396514(-)$1	265	198	230	11.0770
d$$$$$a####ddddllldddd22a333dddd	chr16:89349833-89350150(-)$1	317	83	115	12.9440
fdddd[a####ddddnnnnndddd22a]dddd	chr19:39959300-39959602(+)$1	302	145	177	11.5440
ddd!!dddd!!ddddllldddd22dddd22dd	chr8:94748093-94748357(-)$1	264	106	138	12.3817
"""dddd[ccccccnnnnnccc22ccc]dddd	chr11:62285356-62285642(-)$1	286	109	141	13.7529
ddd!!dddd!!ddddllldddd22dddd22dd	chr8:94748157-94748470(-)$1	313	219	251	12.3817
:ffffffa!!cccooooooccc22a]ffffff	chr17:27004701-27004934(+)$1	233	77	109	10.6742
####eeeee!!cccnnnnnccceeeee]dddd	chr2:54851840-54852177(+)$1	337	205	237	11.6816
g[ccc"""ddddoooooodddd22ccc]gggg	chr17:8451861-8452163(-)$1	302	171	203	11.8703
cc[bb[a####ddddmmmmdddd333a]bbcc	chr5:71492048-71492300(+)$1	252	2	34	10.7318
:dddd[ccc!!cccnnnnnccc22ccc]dddd	chr17:17069721-17070026(+)$1	305	212	244	13.6895
""dddd!!bb[a!!bbmmmmbb22abb]dddd	chr10:120818643-120818914(-)$1	271	63	95	9.5010
[dddd"""bb[ddddllldddd]bb333dddd	chr11:71724630-71724873(-)$1	243	30	62	11.5595
b[ccc[ddddddddoooooodddd]dddd]cc	chr1:245026814-245027072(-)$1	258	148	180	10.4134
'eeeee####cccooooooccc22eeeee555	chr8:94747044-94747314(-)$1	270	82	114	10.9503
"dddd!!ccc!!bbnnnnnbb22ccc22dddd	chr8:94746820-94747051(-)$1	231	118	150	11.6503
ee"""dddd!!ddddllldddd]dddd]eeee	chr11:62291007-62291233(-)$1	226	175	207	11.2477
ggeeeee"""cccooooooccc22eeeee888	chr19:2270320-2270598(+)$1	278	204	236	12.3114
eeeeeee$$$$$bboooooobb333eeeee>>	chr16:89350802-89351075(-)$1	273	177	209	11.2504
:dddd####ddddoooooodddd4444dddd:	chr16:89347358-89347609(-)$1	251	145	177	11.1598
c!!dddd[bb"""bbmmmmbb333bb]dddd]	chr16:89350264-89350500(-)$1	236	37	69	10.0240
#dddd[bb"""cccmmmmccc4444bb]dddd	chr12:6690109-6690325(-)$1	216	97	129	11.7310
[ddddeeeeecccooooooccc4444eeeee2	chr22:36684297-36684544(-)$1	247	70	102	11.9624
:dddd[ccc"""bbnnnnnbb333ccc]dddd	chr5:71490506-71490752(+)$1	246	213	245	12.6503
fffff[dddd!!cccmmmmccc22dddd22ff	chr17:27005815-27006082(+)$1	267	211	243	9.5817
""ffffff"""ddddllldddd22ffffff]f	chr8:94745984-94746207(-)$1	223	118	150	10.5383
fdddd[bb!!ddddnnnnndddd22bb]dddd	chr19:50156283-50156535(+)$1	252	184	216	12.0207
ccc####ccc[cccnnnnnccc]ccc333ccc	chr19:11169365-11169636(+)$1	271	125	157	12.0928
dd"""dddd[ccc!!annnnna22ccc]dddd	chr5:71489866-71490112(+)$1	246	88	120	10.9548
!!bb[bb"""cccooooooccc22bbbb22cc	chr8:41791119-41791403(-)$1	284	176	208	12.1663

#otherMatches

#Seq PSSM
AGUUAGGCCACCAGGUGGGCUGGGGCUAGACC	chr22:20050697-20050991(+)$1	294	75	107	10.6775
AUGCCUGGCUUCAAAGGAGAGGGCCCAGAAGU	chr11:62294969-62295212(-)$1	243	80	112	11.5058
GCAAAGAGGUGGCCCGCUUGGAGACCUUGGUG	chr11:71725591-71725842(-)$1	251	31	63	9.7688
GAAGGCAAGGACCAGGAGUUGGCCAAGCUUCG	chr11:71725178-71725442(-)$1	264	71	103	10.6409
UGACGAAUAUUGUAACAAAAAUCAGUUUCUGG	chr16:89350307-89350602(-)$1	295	94	126	9.2997
GAAGACUCCAACGAUAAAAUCAGCGAGGUCUC	chr16:89348867-89349114(-)$1	247	44	76	12.1947
GGCAGCUCCCAGAGGAAGACCUUAGGGAAGCU	chr8:94745836-94746125(-)$1	289	17	49	10.2736
CCCCUACGUCGGUGCUAUCCUGCCCCAGCUAC	chr16:89347792-89348081(-)$1	289	245	277	8.9267
UCUGCCUGGAUCCCGACAUGGAGAAGGCUCCC	chr12:6709369-6709613(-)$1	244	172	204	11.1728
AAGUUUUAUGGGUUCAAGAUUUAUAGAAGUAA	chr8:94747774-94748010(-)$1	236	16	48	10.1851
AGUGGAUGCCAAGCACGGUGGCAAGGCCCCAC	chrX:153592597-153592830(-)$1	233	155	187	12.5625
AGCAUGCCCGGCUUCAAAGGAGAGGGCCCUGA	chr11:62297644-62297878(-)$1	234	160	192	11.2477
GACGAAAGAGAUUUAAGAAAUUUCUUUAGAGG	chr8:94747717-94747931(-)$1	214	178	210	10.6082
GUGUCUUUGACUCUUGAUCAGAGCCAGUCACA	chr16:2814224-2814480(+)$1	256	142	174	10.4201
CUGCGCAUCGAGGAGGAGAUCCGCGUGGUGCG	chr8:144999533-144999816(-)$1	283	61	93	10.7356
CAGCAGCGCGGGCAAUGGCGCUGGCGGCGGGG	chr19:39138284-39138537(+)$1	253	145	177	11.2225
CAGUGGAGAAGAUCAUCAAGAUCAUCAUCACG	chr8:144994942-144995174(-)$1	232	37	69	11.0430
AGAGACUGGAGACUAUGAAGAGAAGGCAGAAA	chr5:71491920-71492210(+)$1	290	72	104	12.6262
UGCCUGAUUUGGACCUCAAUCUUAAAGGCCCU	chr11:62292083-62292350(-)$1	267	123	155	12.5850
GAUGCGGCUGCAGAACGCCCUCAACGAGCAGC	chr11:71725390-71725668(-)$1	278	212	244	12.9587
AUAGAACAAGAUAUGCCUUUGUGAUGUUCAAG	chr8:94747530-94747780(-)$1	250	106	138	10.2747
AACAUCCAGAAAGAGUCCACUCUGCACUUGGU	chr12:125396249-125396514(-)$1	265	198	230	11.0770
CAGGGACGGCAGGGCCAAGCCCGAGGAGGCGC	chr16:89349833-89350150(-)$1	317	83	115	12.9440
GGAACCGUUACAGCCGGAAGGGCUUUCUGUUC	chr19:39959300-39959602(+)$1	302	145	177	11.5440
GCUGGGUUUCAUACUAAUGGUACAGGACAUGG	chr8:94748093-94748357(-)$1	264	106	138	12.3817
GGACUUUAACUUGGAAGGACCAAAAGUGAAAG	chr11:62285356-62285642(-)$1	286	109	141	13.7529
GCUGGGUUUCAUACUAAUGGUACAGGACAUGG	chr8:94748157-94748470(-)$1	313	219	251	12.3817
AAGAAGCUGACUGGAUCUACAGGAAUGCUUUU	chr17:27004701-27004934(+)$1	233	77	109	10.6742
AAGGCAGCUAUGAGGGAGACUUGGCUGAGCGA	chr2:54851840-54852177(+)$1	337	205	237	11.6816
AUAAUGGGCUUCUCCCAUGAAGAGAUUCUGUG	chr17:8451861-8452163(-)$1	302	171	203	11.8703
GAUGGGGAGGAACACGUAUGUGUGAGCGCCUC	chr5:71492048-71492300(+)$1	252	2	34	10.7318
CAGUCAGUGAGGGAGUCGUUCCACCGCAGGCU	chr17:17069721-17070026(+)$1	305	212	244	13.6895
CUCGAGAAGAUGCUCCGAUUGGUCCUCAUUUG	chr10:120818643-120818914(-)$1	271	63	95	9.5010
AUCCUGAAUCGCCAGGUCCUGGAGAAGGAGGG	chr11:71724630-71724873(-)$1	243	30	62	11.5595
CGGCGGGUGAGUGCUGCGUUGUACGUUGCGCG	chr1:245026814-245027072(-)$1	258	148	180	10.4134
GGUGUUAUUAAGACUUAUAUCUGAGGCACAAA	chr8:94747044-94747314(-)$1	270	82	114	10.9503
CGGAGGACUUCAGGCACUCCCCAGAGGACUUC	chr8:94746820-94747051(-)$1	231	118	150	11.6503
AGCAUGCCUGGCUUCAAAGGAGAAGGCCCUGA	chr11:62291007-62291233(-)$1	226	175	207	11.2477
GUGGCGCACUCCGACAGCCCGGCAGCGCCCUG	chr19:2270320-2270598(+)$1	278	204	236	12.3114
AAAAGUGUUAAAGCACGAUCGCGACCACUUUA	chr16:89350802-89351075(-)$1	273	177	209	11.2504
UGGAAGACAGGGCGCCCCUGCCCCCGGUUCCC	chr16:89347358-89347609(-)$1	251	145	177	11.1598
CAAAUUUAGCCUUUCUGACGAUCAGCGAGAUC	chr16:89350264-89350500(-)$1	236	37	69	10.0240
AUGGAGACAGAGCCCAAAGGUAAAGGUAUCCA	chr12:6690109-6690325(-)$1	216	97	129	11.7310
UGUUCCUUCCCCCAGGUGCGGGAGAUGGAGGC	chr22:36684297-36684544(-)$1	247	70	102	11.9624
AGCCACUGGCCACCCAAAAGGAUCUCACUGGC	chr5:71490506-71490752(+)$1	246	213	245	12.6503
CAAGGCUGGCCCUGCAGGAGCACUGUUAAACC	chr17:27005815-27006082(+)$1	267	211	243	9.5817
CCUUAGGGAAGCUCCGGAGGAGGACCCUAGAC	chr8:94745984-94746207(-)$1	223	118	150	10.5383
CGCUGAAGAAGUCCAAGGCGGAUAGCUGCAGC	chr19:50156283-50156535(+)$1	252	184	216	12.0207
AGCCUCAACGACCUAGAGAAGGACGUCAUGCU	chr19:11169365-11169636(+)$1	271	125	157	12.0928
CCAAGCCCUGCUGUUAUAUUUUUCCAGGAGGG	chr5:71489866-71490112(+)$1	246	88	120	10.9548
CCCUUGAGAGUGGCUACACCCAGAUCAGCCCA	chr8:41791119-41791403(-)$1	284	176	208	12.1663

#DB
.(((.((((.((((.....)))))))).))).	chr22:20050697-20050991(+)$1	1	75	107	10.6775
((.(((((((((......))))..))))....	chr11:62294969-62295212(-)$1	1	80	112	11.5058
(((..(((((..((.....))..)))))..))	chr11:71725591-71725842(-)$1	1	31	63	9.7688
((((.(..((.(((.....)))))..))))).	chr11:71725178-71725442(-)$1	1	71	103	10.6409
.(((..((.((......)).))..)))...).	chr16:89350307-89350602(-)$1	1	94	126	9.2997
(.(((((.(...(((...)))...).))))).	chr16:89348867-89349114(-)$1	1	44	76	12.1947
((.(((((((.((((....)))).))).))))	chr8:94745836-94746125(-)$1	1	17	49	10.2736
(((((.(((.((.((......)).))....))	chr16:89347792-89348081(-)$1	1	245	277	8.9267
(((((((...(((......)))..))))....	chr12:6709369-6709613(-)$1	1	172	204	11.1728
.(.(((((((((((...))))))))))).).)	chr8:94747774-94748010(-)$1	1	16	48	10.1851
(((((..(((..((......))..))).))))	chrX:153592597-153592830(-)$1	1	155	187	12.5625
((...((((..((((...)))).)))).))))	chr11:62297644-62297878(-)$1	1	160	192	11.2477
....((((((((((...))))))))))...))	chr8:94747717-94747931(-)$1	1	178	210	10.6082
(((.((..(.((((.....))))).)).))))	chr16:2814224-2814480(+)$1	1	142	174	10.4201
))((((..((.(((.....))).))..))))(	chr8:144999533-144999816(-)$1	1	61	93	10.7356
(.((..(((.(((......))).))))).)))	chr19:39138284-39138537(+)$1	1	145	177	11.2225
(.((((.((.((((.....)))).)).)))).	chr8:144994942-144995174(-)$1	1	37	69	11.0430
((...(((....((......))....)))...	chr5:71491920-71492210(+)$1	1	72	104	12.6262
.((((.....(((......)))...))))...	chr11:62292083-62292350(-)$1	1	123	155	12.5850
.((((.(((...((......))....))).))	chr11:71725390-71725668(-)$1	1	212	244	12.9587
)).(((((..(((......)))..))))).((	chr8:94747530-94747780(-)$1	1	106	138	10.2747
(....((((..((((....))))....)))).	chr12:125396249-125396514(-)$1	1	198	230	11.0770
(.....(....((((...))))..)...))))	chr16:89349833-89350150(-)$1	1	83	115	12.9440
)((((.(....((((.....))))..).))))	chr19:39959300-39959602(+)$1	1	145	177	11.5440
(((..((((..((((...))))..))))..))	chr8:94748093-94748357(-)$1	1	106	138	12.3817
...((((.((((((.....)))..))).))))	chr11:62285356-62285642(-)$1	1	109	141	13.7529
(((..((((..((((...))))..))))..))	chr8:94748157-94748470(-)$1	1	219	251	12.3817
.(((((((..(((......)))..).))))))	chr17:27004701-27004934(+)$1	1	77	109	10.6742
....(((((..(((.....)))))))).))))	chr2:54851840-54852177(+)$1	1	205	237	11.6816
(.(((...((((......))))..))).))))	chr17:8451861-8452163(-)$1	1	171	203	11.8703
((.((.(....((((....))))...).))))	chr5:71492048-71492300(+)$1	1	2	34	10.7318
.((((.(((..(((.....)))..))).))))	chr17:17069721-17070026(+)$1	1	212	244	13.6895
..((((..((.(..((....))..))).))))	chr10:120818643-120818914(-)$1	1	63	95	9.5010
.((((...((.((((...)))).))...))))	chr11:71724630-71724873(-)$1	1	30	62	11.5595
(.(((.((((((((......)))).)))).))	chr1:245026814-245027072(-)$1	1	148	180	10.4134
.(((((....(((......)))..)))))...	chr8:94747044-94747314(-)$1	1	82	114	10.9503
.((((..(((..((.....))..)))..))))	chr8:94746820-94747051(-)$1	1	118	150	11.6503
((...((((..((((...)))).)))).))))	chr11:62291007-62291233(-)$1	1	175	207	11.2477
(((((((...(((......)))..)))))...	chr19:2270320-2270598(+)$1	1	204	236	12.3114
(((((((.....((......))...)))))..	chr16:89350802-89351075(-)$1	1	177	209	11.2504
.((((....((((......))))....)))).	chr16:89347358-89347609(-)$1	1	145	177	11.1598
(..((((.((...((....))...)).)))).	chr16:89350264-89350500(-)$1	1	37	69	10.0240
.((((.((...(((....)))....)).))))	chr12:6690109-6690325(-)$1	1	97	129	11.7310
.((((((((((((......)))....))))).	chr22:36684297-36684544(-)$1	1	70	102	11.9624
.((((.(((...((.....))...))).))))	chr5:71490506-71490752(+)$1	1	213	245	12.6503
(((((.((((..(((....)))..))))..))	chr17:27005815-27006082(+)$1	1	211	243	9.5817
..((((((...((((...))))..)))))).)	chr8:94745984-94746207(-)$1	1	118	150	10.5383
(((((.((..((((.....))))..)).))))	chr19:50156283-50156535(+)$1	1	184	216	12.0207
(((....(((.(((.....))).)))...)))	chr19:11169365-11169636(+)$1	1	125	157	12.0928
((...((((.(((..(.....)..))).))))	chr5:71489866-71490112(+)$1	1	88	120	10.9548
..((.((...(((......)))..))))..))	chr8:41791119-41791403(-)$1	1	176	208	12.1663

#PSSM
e : 0.15	c : 0.11	d : 0.11	" : 0.09	[ : 0.07	# : 0.07	b : 0.07	: : 0.07	g : 0.05	f : 0.05	+ : 0.01	h : 0.01	' : 0.01	! : 0.01	
d : 0.31	c : 0.13	e : 0.11	[ : 0.09	# : 0.05	" : 0.05	b : 0.03	g : 0.03	f : 0.03	! : 0.03	a : 0.01	h : 0.01	$ : 0.01	
d : 0.33	c : 0.15	e : 0.11	" : 0.09	[ : 0.07	# : 0.05	f : 0.05	b : 0.03	: : 0.01	$ : 0.01	! : 0.01	
d : 0.37	e : 0.11	c : 0.09	" : 0.07	# : 0.07	! : 0.05	b : 0.05	f : 0.05	a : 0.01	= : 0.01	[ : 0.01	$ : 0.01	
d : 0.37	e : 0.13	! : 0.09	" : 0.07	[ : 0.05	c : 0.05	f : 0.05	= : 0.03	b : 0.03	# : 0.03	$ : 0.01	
d : 0.29	[ : 0.19	e : 0.15	! : 0.07	= : 0.03	b : 0.03	$ : 0.03	f : 0.03	" : 0.03	# : 0.03	a : 0.01	c : 0.01	
d : 0.27	e : 0.13	! : 0.11	c : 0.11	b : 0.07	a : 0.05	# : 0.05	= : 0.03	f : 0.03	" : 0.03	[ : 0.01	$ : 0.01	
d : 0.19	c : 0.19	" : 0.09	# : 0.09	e : 0.07	! : 0.07	b : 0.07	[ : 0.05	= : 0.03	$ : 0.03	a : 0.01	f : 0.01	
d : 0.21	c : 0.19	b : 0.11	# : 0.11	" : 0.09	e : 0.05	! : 0.05	a : 0.03	= : 0.03	$ : 0.03	[ : 0.01	
! : 0.19	" : 0.15	[ : 0.11	b : 0.11	d : 0.09	c : 0.09	# : 0.09	e : 0.03	= : 0.03	$ : 0.03	
! : 0.21	c : 0.21	d : 0.15	[ : 0.11	" : 0.11	# : 0.07	b : 0.03	= : 0.03	$ : 0.01	
d : 0.37	c : 0.33	! : 0.07	" : 0.07	= : 0.03	o : 0.01	b : 0.01	# : 0.01	a : 0.01	$ : 0.01	
c : 0.37	d : 0.33	b : 0.13	o : 0.05	= : 0.03	[ : 0.01	! : 0.01	" : 0.01	
d : 0.31	o : 0.25	b : 0.17	c : 0.17	= : 0.03	! : 0.03	
o : 0.35	n : 0.25	d : 0.21	b : 0.05	c : 0.03	l : 0.03	m : 0.01	! : 0.01	
o : 0.37	n : 0.27	l : 0.19	m : 0.11	b : 0.01	a : 0.01	
o : 0.37	n : 0.29	l : 0.19	m : 0.13	
o : 0.35	n : 0.29	l : 0.15	m : 0.13	= : 0.03	b : 0.01	
o : 0.31	n : 0.29	d : 0.17	m : 0.11	c : 0.03	= : 0.03	b : 0.01	
c : 0.35	d : 0.33	o : 0.11	b : 0.07	= : 0.03	n : 0.03	] : 0.01	m : 0.01	
d : 0.37	c : 0.35	b : 0.19	= : 0.03	o : 0.01	n : 0.01	
d : 0.37	c : 0.31	b : 0.13	3 : 0.05	2 : 0.03	= : 0.03	4 : 0.01	a : 0.01	
2 : 0.41	d : 0.19	] : 0.11	3 : 0.09	4 : 0.07	b : 0.03	= : 0.03	e : 0.01	
2 : 0.39	3 : 0.11	4 : 0.11	d : 0.09	b : 0.05	] : 0.05	c : 0.05	e : 0.03	= : 0.03	a : 0.01	
c : 0.21	d : 0.15	b : 0.11	4 : 0.11	e : 0.09	a : 0.07	2 : 0.05	3 : 0.05	= : 0.03	] : 0.03	f : 0.01	
c : 0.21	d : 0.19	b : 0.15	e : 0.11	4 : 0.09	2 : 0.05	3 : 0.05	] : 0.03	= : 0.03	f : 0.01	
d : 0.19	c : 0.19	e : 0.15	b : 0.11	a : 0.05	4 : 0.05	3 : 0.05	= : 0.03	2 : 0.03	] : 0.03	f : 0.03	
] : 0.33	d : 0.25	e : 0.13	3 : 0.09	b : 0.03	c : 0.03	f : 0.03	4 : 0.01	= : 0.01	2 : 0.01	
d : 0.41	e : 0.19	2 : 0.09	c : 0.05	3 : 0.05	4 : 0.03	] : 0.03	f : 0.03	5 : 0.01	g : 0.01	b : 0.01	
d : 0.37	e : 0.15	2 : 0.09	3 : 0.05	c : 0.03	4 : 0.03	5 : 0.03	] : 0.03	f : 0.03	a : 0.01	> : 0.01	: : 0.01	g : 0.01	b : 0.01	8 : 0.01	
d : 0.43	c : 0.13	e : 0.13	f : 0.07	5 : 0.03	] : 0.03	> : 0.03	4 : 0.01	a : 0.01	3 : 0.01	g : 0.01	8 : 0.01	
d : 0.31	c : 0.13	] : 0.09	e : 0.09	f : 0.09	2 : 0.03	5 : 0.03	3 : 0.03	> : 0.03	4 : 0.01	= : 0.01	g : 0.01	8 : 0.01	: : 0.01	

#score	577.4272588629588
#seq	51
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_transcript_m3_run2.txt

#BEAR
"a[a!!a[cccqqqqqqqqccca22a]a3	chr19:5661535-5661809(+)$1	274	53	82	17.6870
dd[ccc[ddddqqqqqqqqddddccc]dd	chr20:34327302-34327514(-)$1	212	2	31	16.7899
b[dddd!!cccqqqqqqqqccc22dddd]	chr20:57234574-57234790(+)$1	216	155	184	16.0178
bbffffff!!aqqqqqqqqa]ffffff22	chr12:49318749-49319036(-)$1	287	77	106	14.5736
eee####ddddqqqqqqqqdddd4444ee	chr5:179049953-179050238(-)$1	285	12	41	17.8074
:ccc[bb[cccqqqqqqqqccc]bb4444	chr16:84215081-84215355(-)$1	274	191	220	15.4265
ggggggg!!bbqqqqqqqqbb22gggggg	chr9:100843112-100843432(+)$1	320	76	105	15.7479
dddd!!ccc[aqqqqqqqqa]ccc22ddd	chr16:1823228-1823486(+)$1	258	49	78	16.3570
b[a[gggggggqqqqqqqqggggggga]b	chr3:184081214-184081465(+)$1	251	220	249	15.4347
eee####ddddqqqqqqqqdddd333eee	chr16:89871615-89871898(-)$1	283	241	270	17.8808
::ccc!!ddddqqqqqqqqdddd4444cc	chr2:70057115-70057385(+)$1	270	96	125	16.4859
::ffffffcccqqqqqqqqccc]ffffff	chr12:124017615-124017949(-)$1	334	67	96	13.8597
:ccc!!eeeeeqqqqqqqqeeeee22ccc	chr2:46926423-46926685(+)$1	262	207	236	15.5905
eee!!ffffffqqqqqqqqffffffeeee	chr6:170060435-170060708(-)$1	273	45	74	14.3009
:ggggggg[bbqqqqqqqqbb]ggggggg	chr16:270624-270847(-)$1	223	104	133	15.0463
""dddd"""bbqqqqqqqqbb]dddd22d	chr2:238990617-238990872(+)$1	255	79	108	15.1050
dddd$$$$$bbqqqqqqqqbb4444dddd	chr13:107209788-107210069(-)$1	281	85	114	15.9043
fffff!!ddddqqqqqqqqddddffffff	chr1:6272297-6272585(+)$1	288	99	128	16.2180
###bb!!ddddqqqqqqqqdddd22bb22	chr6:33179565-33179829(+)$1	264	107	136	16.3775
dddd[bbcccrrrrrrrrrccc4444bb]	chr17:2266292-2266530(+)$1	238	26	55	10.2791
:a!!a!!ddddqqqqqqqqdddd22a22a	chr22:41650227-41650535(-)$1	308	136	165	16.7529
dddccc[ddddqqqqqqqqddddccc]dd	chr16:1411938-1412236(+)$1	298	205	234	16.6391
:dddd[a[cccqqqqqqqqccc]a]dddd	chr9:117051093-117051309(+)$1	216	6	35	15.6421
b!!ccc[ddddqqqqqqqqdddd]ccc22	chr11:65267977-65268182(+)$1	205	123	152	17.0202
[eeeee[ddddwwwwwwwwwwwwwwdddd	chrX:41193334-41193613(+)$1	279	208	237	10.5225
e[ggggggg[aqqqqqqqqaggggggg]e	chr7:99158136-99158393(+)$1	257	80	109	16.0957
fff####cccrrrrrrrrrccc4444fff	chr11:67159529-67159870(+)$1	341	271	300	11.7084
c[ccc[eeeeeqqqqqqqqeeeee]ccc]	chrX:128674250-128674554(+)$1	304	92	121	16.1836
####gggggggwwwwwwwwwwwwwwgggg	chr19:4722405-4722664(-)$1	259	212	241	10.9490
eeggggggg[aqqqqqqqqa]ggggggg2	chr2:232577060-232577296(+)$1	236	40	69	15.7570
b:ccc[cccbbqqqqqqqqbb]ccc]ccc	chr11:85375005-85375277(-)$1	272	133	162	15.3143
ccc"""eeeeeqqqqqqqqeeeee22ccc	chr1:11716004-11716259(+)$1	255	84	113	16.3514
ffffff[ddddqqqqqqqqdddd]fffff	chr2:233684580-233684796(+)$1	216	161	190	16.0612
ddd!!ddddbbqqqqqqqqbb]dddd]dd	chr21:46906731-46906957(+)$1	226	1	30	15.3485
dgggggggcccqqqqqqqqccc4444ggg	chr2:85786023-85786290(-)$1	267	92	121	17.4301
[a[ccc[ddddqqqqqqqqdddd]cccac	chr14:73569937-73570209(+)$1	272	171	200	17.2854
ff[ccc"""bbqqqqqqqqbb333ccc]f	chr20:34055091-34055384(+)$1	293	173	202	16.7971
ggggg[eeeeeqqqqqqqqeeeeeggggg	chr2:61404551-61404801(+)$1	250	41	70	15.7637
====[bb[cccqqqqqqqqccc]bb]===	chr21:34143740-34144183(-)$1	443	380	409	16.0856
ccc####ddddqqqqqqqqdddd333ccc	chr19:2438274-2438594(-)$1	320	255	284	18.4532
cc]ccceeeeeqqqqqqqqeeeeedddd[	chr1:160209853-160210171(-)$1	318	48	77	14.6889
dddd####cccqqqqqqqqccc4444ddd	chr22:21983690-21984031(-)$1	341	68	97	17.6880
ccc!!bbddddqqqqqqqqdddd]bb22c	chr21:45736247-45736509(+)$1	262	76	105	16.1146
ffffff!!a[aqqqqqqqqa]a22fffff	chr11:67771312-67771671(-)$1	359	54	83	15.7237
gggbb####bbqqqqqqqqbb4444bb]g	chr14:24031088-24031372(-)$1	284	174	203	16.3687
h[bb$$$$$bbqqqqqqqqbb4444bbhh	chr17:4578330-4578573(-)$1	243	38	67	15.0883
"ccc!!eeeeeqqqqqqqqeeeeeccc33	chr20:3888582-3888889(+)$1	307	144	173	16.5161
d"""ccc[cccqqqqqqqqccc4444ccc	chr9:116997826-116998032(+)$1	206	108	137	17.6403
ee[ddddddddqqqqqqqqdddd888888	chr9:116984402-116984607(+)$1	205	15	44	14.1029
!bb[a!!a!!aqqqqqqqqa22a22a]bb	chr17:65822127-65822479(+)$1	352	140	169	15.9904
[bb[bb[ddddqqqqqqqqddddbbbbdd	chr12:6650574-6650857(-)$1	283	128	157	15.0867
[ffffffbb[aqqqqqqqqa]bb]fffff	chr22:31608279-31608530(+)$1	251	175	204	14.2541
dddd!!cccbbqqqqqqqqbb]ccc]ddd	chr20:25462567-25462834(-)$1	267	215	244	15.9995
e$$$$$eeeeeqqqqqqqqeeeeeeeeee	chr5:891238-891478(-)$1	240	147	176	14.6388

#otherMatches

#Seq PSSM
GCGUGAGCGGCUGGAGAUUGCCCGAGAGA	chr19:5661535-5661809(+)$1	274	53	82	17.6870
GAGUCAACAUUACUAAAGCAGUGUGAAUC	chr20:34327302-34327514(-)$1	212	2	31	16.7899
AGUUUAUAAAAUACCUACUUUUCCUGAAG	chr20:57234574-57234790(+)$1	216	155	184	16.0178
CCGGGUCUAGGGGCGAGAACGGGAUCUUU	chr12:49318749-49319036(-)$1	287	77	106	14.5736
gccUCGGAGGCGAAGGACAGCUUAAUUGG	chr5:179049953-179050238(-)$1	285	12	41	17.8074
ACGAACUGAACUCCGCCCUGUUGAGCAUG	chr16:84215081-84215355(-)$1	274	191	220	15.4265
CCAAGGUGUUGGAACGUCACAUAACUUUG	chr9:100843112-100843432(+)$1	320	76	105	15.7479
GCCGGGGACGGGGCGGGAGCGGUCAGCGG	chr16:1823228-1823486(+)$1	258	49	78	16.3570
UUGUGGCCUGCCCCUACCAGCAGGUCCUG	chr3:184081214-184081465(+)$1	251	220	249	15.4347
GUAAAACUCAUUUUGAUCUGUGAUAAUGC	chr16:89871615-89871898(-)$1	283	241	270	17.8808
ACCCUGACUCGGAGACGGACGAGGAUGAG	chr2:70057115-70057385(+)$1	270	96	125	16.4859
AUCGCGCGCCUCAUGCCCAAGGUCGUGCG	chr12:124017615-124017949(-)$1	334	67	96	13.8597
cggcccccgcgccgucguccgcggccgcc	chr2:46926423-46926685(+)$1	262	207	236	15.5905
UGAAUCUGAGGAUGAGAUGCUUCAGUCAC	chr6:170060435-170060708(-)$1	273	45	74	14.3009
AUGGAUUUAGGAGAAUGUACCAAAAUCCA	chr16:270624-270847(-)$1	223	104	133	15.0463
AAUCAGUCAGCGCAUUAAAGCCCUGAACC	chr2:238990617-238990872(+)$1	255	79	108	15.1050
CAGUACAAAUCAUUUUAAAGAGGAAGCUG	chr13:107209788-107210069(-)$1	281	85	114	15.9043
UGCACAAGUCCCUGCAACUGGACGUGCAG	chr1:6272297-6272585(+)$1	288	99	128	16.2180
GUGCCGGAGGAGGUGACGGUCCUGAGGAG	chr6:33179565-33179829(+)$1	264	107	136	16.3775
CAGCCGAUCACUACUGGACUGACCCCUCU	chr17:2266292-2266530(+)$1	238	26	55	10.2791
ggaggaggaggaagaagagCCUCAGCAGC	chr22:41650227-41650535(-)$1	308	136	165	16.7529
GACGGGAGCCCGGGAAGAGGGGCCCCAGU	chr16:1411938-1412236(+)$1	298	205	234	16.6391
UGUCUAGAAAGAACAAGAACUUCCCAGGC	chr9:117051093-117051309(+)$1	216	6	35	15.6421
GAGUGCAAUUUGGUGAUGAAGGUAGCAGG	chr11:65267977-65268182(+)$1	205	123	152	17.0202
ACCAGCAGGUGAGCCGCAAGAACCCCACC	chrX:41193334-41193613(+)$1	279	208	237	10.5225
CACCAAGGGUCCAGUUUCAGUCUUUGGAG	chr7:99158136-99158393(+)$1	257	80	109	16.0957
AUUUGUCGGCAAAGUUUCAGUUUCUUAGU	chr11:67159529-67159870(+)$1	341	271	300	11.7084
UGUGGGGACGCGGGAGCCAGUGUCGUCGG	chrX:128674250-128674554(+)$1	304	92	121	16.1836
UUUGCCUGCUCUAGAAUAUAGACAUGGGC	chr19:4722405-4722664(-)$1	259	212	241	10.9490
GGAGCCACAGUAGGAGGGAAGUGUGGUUU	chr2:232577060-232577296(+)$1	236	40	69	15.7570
CACUGCAGGAGGAGAGUCGCUACCUACGG	chr11:85375005-85375277(-)$1	272	133	162	15.3143
CCGACUGGAAGAUCUUCUACUUCUUACGG	chr1:11716004-11716259(+)$1	255	84	113	16.3514
UUAGUGAUUUAGAAAAUAUUAGGACAUUA	chr2:233684580-233684796(+)$1	216	161	190	16.0612
GGGCUGGGCUGGGUCCUGACACGCUCUCC	chr21:46906731-46906957(+)$1	226	1	30	15.3485
GGUUCUUGAUGGUGCUAGACAUUCCCCAG	chr2:85786023-85786290(-)$1	267	92	121	17.4301
agaucgggaucgagagagagaUCGUGACC	chr14:73569937-73570209(+)$1	272	171	200	17.2854
CUGCUGCUGCUACUAGCCAAGACCCAGGA	chr20:34055091-34055384(+)$1	293	173	202	16.7971
GGGGCUCGGCGGCCGGAAACGCUGGCUUC	chr2:61404551-61404801(+)$1	250	41	70	15.7637
GGGGCCGUCGCCGCCUUCCGCGCUGACCC	chr21:34143740-34144183(-)$1	443	380	409	16.0856
GGUAUAUGCAACAGACAGAUUGUCACACC	chr19:2438274-2438594(-)$1	320	255	284	18.4532
UGAAGAGGGGAGGGAGACAUCCUCAGGCA	chr1:160209853-160210171(-)$1	318	48	77	14.6889
CCCGGAAGGCUUCUUCCUUGGCAAGAUGG	chr22:21983690-21984031(-)$1	341	68	97	17.6880
CAGAGGCUGGGCUUCGACACCCGUGUAAC	chr21:45736247-45736509(+)$1	262	76	105	16.1146
CGGGACAGGGCGGGGCGGGGGCAGGUCCC	chr11:67771312-67771671(-)$1	359	54	83	15.7237
CACUCUUCCGGAAAUACGACCACAUGAGG	chr14:24031088-24031372(-)$1	284	174	203	16.3687
UAGGGCGUGCCAGAAACGAGGGUCACCAU	chr17:4578330-4578573(-)$1	243	38	67	15.0883
AGGCAUUCGGGACGUGCACCUCGAGCUGA	chr20:3888582-3888889(+)$1	307	144	173	16.5161
AAUUGCAUGAGAUUUUCCCCUCCCCCUGC	chr9:116997826-116998032(+)$1	206	108	137	17.6403
GGUGCCUGUGUGGAGGAUGACAUGGAGGG	chr9:116984402-116984607(+)$1	205	15	44	14.1029
aggaggaggaggaggaggaCGGCGACGCC	chr17:65822127-65822479(+)$1	352	140	169	15.9904
UGGACGUGCAGAUGGAGACCUGCCGCCGG	chr12:6650574-6650857(-)$1	283	128	157	15.0867
UCCGGUUCCAUGGCGCCUGAGGGAAACCG	chr22:31608279-31608530(+)$1	251	175	204	14.2541
GGACUCGGCCCAGCAGGUAGGAGCCCGUC	chr20:25462567-25462834(-)$1	267	215	244	15.9995
GAAGAAGGUGGAGGUGGAGCCGCCCCCAG	chr5:891238-891478(-)$1	240	147	176	14.6388

#DB
.(.(..(.(((........))))..).).	chr19:5661535-5661809(+)$1	1	53	82	17.6870
((.(((.((((........))))))).))	chr20:34327302-34327514(-)$1	1	2	31	16.7899
(.((((..(((........)))..)))).	chr20:57234574-57234790(+)$1	1	155	184	16.0178
((((((((..(........).))))))..	chr12:49318749-49319036(-)$1	1	77	106	14.5736
(((....((((........))))....))	chr5:179049953-179050238(-)$1	1	12	41	17.8074
.(((.((.(((........))).))....	chr16:84215081-84215355(-)$1	1	191	220	15.4265
(((((((..((........))..))))))	chr9:100843112-100843432(+)$1	1	76	105	15.7479
((((..(((.(........).)))..)))	chr16:1823228-1823486(+)$1	1	49	78	16.3570
(.(.(((((((........)))))))).)	chr3:184081214-184081465(+)$1	1	220	249	15.4347
(((....((((........))))...)))	chr16:89871615-89871898(-)$1	1	241	270	17.8808
..(((..((((........))))....))	chr2:70057115-70057385(+)$1	1	96	125	16.4859
..(((((((((........))).))))))	chr12:124017615-124017949(-)$1	1	67	96	13.8597
.(((..(((((........)))))..)))	chr2:46926423-46926685(+)$1	1	207	236	15.5905
(((..((((((........))))))))))	chr6:170060435-170060708(-)$1	1	45	74	14.3009
.(((((((.((........)).)))))))	chr16:270624-270847(-)$1	1	104	133	15.0463
..((((...((........)).))))..)	chr2:238990617-238990872(+)$1	1	79	108	15.1050
((((.....((........))....))))	chr13:107209788-107210069(-)$1	1	85	114	15.9043
(((((..((((........))))))))))	chr1:6272297-6272585(+)$1	1	99	128	16.2180
...((..((((........))))..))..	chr6:33179565-33179829(+)$1	1	107	136	16.3775
((((.(((((.........)))....)).	chr17:2266292-2266530(+)$1	1	26	55	10.2791
.(..(..((((........))))..)..)	chr22:41650227-41650535(-)$1	1	136	165	16.7529
((((((.((((........))))))).))	chr16:1411938-1412236(+)$1	1	205	234	16.6391
.((((.(.(((........))).).))))	chr9:117051093-117051309(+)$1	1	6	35	15.6421
(..(((.((((........)))).)))..	chr11:65267977-65268182(+)$1	1	123	152	17.0202
.(((((.((((..............))))	chrX:41193334-41193613(+)$1	1	208	237	10.5225
(.(((((((.(........)))))))).)	chr7:99158136-99158393(+)$1	1	80	109	16.0957
(((....(((.........)))....)))	chr11:67159529-67159870(+)$1	1	271	300	11.7084
(.(((.(((((........))))).))).	chrX:128674250-128674554(+)$1	1	92	121	16.1836
....(((((((..............))))	chr19:4722405-4722664(-)$1	1	212	241	10.9490
(((((((((.(........).))))))).	chr2:232577060-232577296(+)$1	1	40	69	15.7570
).(((.(((((........)).))).)))	chr11:85375005-85375277(-)$1	1	133	162	15.3143
(((...(((((........)))))..)))	chr1:11716004-11716259(+)$1	1	84	113	16.3514
((((((.((((........)))).)))))	chr2:233684580-233684796(+)$1	1	161	190	16.0612
(((..((((((........)).)))).))	chr21:46906731-46906957(+)$1	1	1	30	15.3485
)((((((((((........)))....)))	chr2:85786023-85786290(-)$1	1	92	121	17.4301
.(.(((.((((........)))).)))))	chr14:73569937-73570209(+)$1	1	171	200	17.2854
((.(((...((........))...))).)	chr20:34055091-34055384(+)$1	1	173	202	16.7971
(((((.(((((........))))))))))	chr2:61404551-61404801(+)$1	1	41	70	15.7637
((((.((.(((........))).)).)))	chr21:34143740-34144183(-)$1	1	380	409	16.0856
(((....((((........))))...)))	chr19:2438274-2438594(-)$1	1	255	284	18.4532
)).)))(((((........)))))((((.	chr1:160209853-160210171(-)$1	1	48	77	14.6889
((((....(((........)))....)))	chr22:21983690-21984031(-)$1	1	68	97	17.6880
(((..((((((........)))).))..)	chr21:45736247-45736509(+)$1	1	76	105	16.1146
((((((..(.(........).)..)))))	chr11:67771312-67771671(-)$1	1	54	83	15.7237
(((((....((........))....)).)	chr14:24031088-24031372(-)$1	1	174	203	16.3687
(.((.....((........))....))))	chr17:4578330-4578573(-)$1	1	38	67	15.0883
.(((..(((((........))))))))..	chr20:3888582-3888889(+)$1	1	144	173	16.5161
(...(((.(((........)))....)))	chr9:116997826-116998032(+)$1	1	108	137	17.6403
((.((((((((........))))......	chr9:116984402-116984607(+)$1	1	15	44	14.1029
.((.(..(..(........)..)..).))	chr17:65822127-65822479(+)$1	1	140	169	15.9904
.((.((.((((........))))))))))	chr12:6650574-6650857(-)$1	1	128	157	15.0867
.((((((((.(........).)).)))))	chr22:31608279-31608530(+)$1	1	175	204	14.2541
((((..(((((........)).))).)))	chr20:25462567-25462834(-)$1	1	215	244	15.9995
(.....(((((........))))))))))	chr5:891238-891478(-)$1	1	147	176	14.6388

#PSSM
d : 0.18	e : 0.12	: : 0.12	b : 0.09	f : 0.09	c : 0.09	[ : 0.07	" : 0.05	g : 0.05	# : 0.03	= : 0.01	h : 0.01	! : 0.01	
d : 0.16	c : 0.12	e : 0.11	f : 0.11	[ : 0.09	g : 0.09	a : 0.05	b : 0.05	: : 0.05	" : 0.03	# : 0.03	! : 0.01	= : 0.01	$ : 0.01	
d : 0.18	c : 0.16	f : 0.12	g : 0.12	[ : 0.09	e : 0.07	b : 0.05	# : 0.03	! : 0.03	a : 0.01	= : 0.01	] : 0.01	" : 0.01	$ : 0.01	
c : 0.22	d : 0.16	f : 0.11	g : 0.11	# : 0.09	! : 0.07	[ : 0.05	b : 0.05	" : 0.03	a : 0.01	e : 0.01	= : 0.01	$ : 0.01	
c : 0.18	! : 0.14	g : 0.14	f : 0.11	# : 0.09	d : 0.07	[ : 0.05	$ : 0.05	b : 0.05	a : 0.03	e : 0.01	" : 0.01	
! : 0.18	c : 0.12	g : 0.12	f : 0.11	# : 0.11	b : 0.09	d : 0.07	[ : 0.07	$ : 0.05	e : 0.01	" : 0.01	
[ : 0.12	! : 0.12	g : 0.12	e : 0.12	# : 0.11	f : 0.07	b : 0.07	c : 0.07	a : 0.03	" : 0.03	$ : 0.03	d : 0.03	
d : 0.31	e : 0.12	g : 0.11	[ : 0.09	c : 0.09	! : 0.05	f : 0.05	" : 0.03	$ : 0.03	# : 0.03	a : 0.01	b : 0.01	
d : 0.31	c : 0.25	e : 0.12	g : 0.07	! : 0.05	" : 0.03	$ : 0.03	f : 0.01	[ : 0.01	a : 0.01	# : 0.01	b : 0.01	
d : 0.29	c : 0.20	b : 0.18	e : 0.12	[ : 0.09	! : 0.03	g : 0.03	f : 0.01	
d : 0.29	b : 0.18	c : 0.16	a : 0.12	e : 0.12	g : 0.03	r : 0.03	f : 0.01	
q : 0.92	r : 0.03	w : 0.03	
q : 0.92	r : 0.03	w : 0.03	
q : 0.92	r : 0.03	w : 0.03	
q : 0.92	r : 0.03	w : 0.03	
q : 0.92	r : 0.03	w : 0.03	
q : 0.92	r : 0.03	w : 0.03	
q : 0.92	r : 0.03	w : 0.03	
q : 0.92	r : 0.03	w : 0.03	
d : 0.27	c : 0.20	b : 0.18	a : 0.12	e : 0.12	w : 0.03	g : 0.01	f : 0.01	
d : 0.27	c : 0.20	b : 0.18	e : 0.12	] : 0.09	g : 0.03	w : 0.03	f : 0.01	2 : 0.01	
d : 0.27	c : 0.22	e : 0.12	] : 0.09	g : 0.05	4 : 0.05	f : 0.03	2 : 0.03	w : 0.03	3 : 0.01	a : 0.01	b : 0.01	
d : 0.31	4 : 0.14	e : 0.12	] : 0.07	g : 0.07	2 : 0.05	c : 0.05	a : 0.03	f : 0.03	w : 0.03	3 : 0.01	b : 0.01	
4 : 0.18	e : 0.12	2 : 0.11	c : 0.09	g : 0.09	] : 0.09	f : 0.07	b : 0.05	3 : 0.05	d : 0.03	w : 0.03	a : 0.01	8 : 0.01	
4 : 0.18	c : 0.14	2 : 0.12	f : 0.12	g : 0.11	d : 0.07	b : 0.07	3 : 0.03	] : 0.03	w : 0.03	8 : 0.01	e : 0.01	
4 : 0.14	c : 0.12	d : 0.12	g : 0.12	f : 0.11	b : 0.09	a : 0.05	2 : 0.05	] : 0.05	3 : 0.03	e : 0.03	8 : 0.01	
c : 0.18	d : 0.14	f : 0.12	g : 0.12	] : 0.09	b : 0.09	4 : 0.05	e : 0.05	2 : 0.05	a : 0.01	= : 0.01	8 : 0.01	
d : 0.22	c : 0.12	2 : 0.11	g : 0.11	f : 0.11	e : 0.07	] : 0.07	a : 0.03	b : 0.03	4 : 0.01	= : 0.01	h : 0.01	3 : 0.01	8 : 0.01	
d : 0.20	c : 0.14	f : 0.12	g : 0.11	e : 0.09	2 : 0.07	] : 0.05	3 : 0.03	b : 0.03	4 : 0.01	a : 0.01	= : 0.01	[ : 0.01	h : 0.01	8 : 0.01	

#score	844.9542018763401
#seq	54
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_transcript_m3_run1.txt

#BEAR
eeeee"""ggggggg!!bbmmmmbb333gggggggeee	chr4:1236398-1236656(-)$1	258	202	240	16.1596
=========bb[bb[ddddmmmmdddd]bb]bb333==	chr19:578195-578419(+)$1	224	24	62	13.4401
c[bb"""dddd[bb!!cccmmmmccc22bb]dddd444	chr22:48249050-48249318(+)$1	268	94	132	13.4119
"""eeeee[ccc[ccc!!ammmma22cccccceeeee3	chr16:89028471-89028694(-)$1	223	8	46	13.0154
###bb####ggggggg[bbnnnnnbb22ggggggg]bb	chr22:19875050-19875306(-)$1	256	60	98	11.5109
========[ggggggg[bbmmmmbbggggggg333===	chr3:196694286-196694519(-)$1	233	111	149	17.9512
ccc!!ccc[bb[dddd[cccmmmmccc]dddd]bb]cc	chr16:89040103-89040331(-)$1	228	52	90	11.4922
bb[eeeee!!eeeee!!bbmmmmbb22eeeee22eeee	chr19:2047774-2048060(-)$1	286	211	249	14.0333
##ccc[dddd"""ffffffmmmmffffff22dddd333	chr16:88565915-88566200(+)$1	285	182	220	12.2598
GG==========!!bb[bbmmmmbbbb==========C	chr16:88527478-88527798(+)$1	320	280	318	14.6800
gggg[bb[eeeee"""cccmmmmccc22eeeee]bb]g	chr1:246137213-246137465(-)$1	252	92	130	12.9800
eebb[a[eeeee[ccc[bbmmmmbbccc]eeeee]a]b	chr19:34874498-34874813(+)$1	315	30	68	14.4203
ccc[bb!!===========mmmm===========>>>>	chr13:114873540-114873766(-)$1	226	158	196	15.1509
ee[dddd!!eeeee[a[bbmmmmbb]a]eeeee333dd	chr7:1100289-1100574(-)$1	285	59	97	15.3538
::::a[ggggggg"""cccmmmmccc333ggggggg]a	chr19:5117293-5117541(+)$1	248	10	48	11.4359
ddd!!ddddbb"""bb[bbmmmmbb]bb333bb22ddd	chr7:23454454-23454796(-)$1	342	286	324	13.6929
e[ccc[=============mmmm=============]c	chr16:1424342-1424591(-)$1	249	173	211	16.3596
hhhhh"""bb[dddd[cccmmmmcccdddd22bb4444	chr19:15348962-15349227(-)$1	265	27	65	12.7734
cc!!a!!bb"""gggggggmmmmggggggg4444bb22	chr11:62284211-62284455(-)$1	244	54	92	14.2067
ff####bb"""ccc[ddddmmmmddddcccbb4444ff	chr4:2396427-2396693(-)$1	266	41	79	12.8157
ggggggg[bb"""ccc[bbmmmmbb]ccc]bbgggggg	chr22:49861573-49861837(-)$1	264	136	174	15.2727
[ccc"""dddd[a[a[cccmmmmccc]a]a]ddddccc	chr13:108518204-108518477(-)$1	273	74	112	14.2007
eeeccc"""hhhhhhhhbbmmmmbb]hhhhhhhh333c	chr21:45349522-45349771(+)$1	249	121	159	13.7092
ggg:cccdddd!!ffffffmmmmffffff]dddd]ccc	chr13:92000556-92000833(+)$1	277	210	248	10.7867
[a[bb[bb[a[eeeee[bbmmmmbb22eeeee]a]bb]	chr13:114527192-114527475(+)$1	283	175	213	14.6694
[bb!!ccc####ccc[bbnnnnnbb22ccc333ccc22	chr1:2160051-2160335(+)$1	284	136	174	11.7831
fffffiiiiiiiiia!!bbmmmmbb22a]iiiiiiiii	chr7:1893825-1894080(-)$1	255	141	179	16.1713
=========[dddd!!cccmmmmccc22dddd]=====	chr9:140172950-140173201(+)$1	251	148	186	15.3473
:ccc"""ccc[ccc[ddddmmmmddddccc]ccc]ccc	chr7:2162398-2162654(-)$1	256	155	193	12.4679
ggggccc[a[affffffbbmmmmbb]ffffff]a]a]c	chr7:76255993-76256260(+)$1	267	212	250	14.7237
hhh[dddd"""ccc[ddddmmmmdddd]ccc4444ddd	chr20:62902781-62903041(+)$1	260	17	55	12.3321
!!dddd!!eeeee[eeeeemmmmeeeee333eeeee22	chr11:43501218-43501585(+)$1	367	144	182	11.3116
dddd[dddd"""gggggggmmmmggggggg333dddd2	chr8:58118373-58118632(+)$1	259	196	234	13.0027
DD:============!!bbmmmmbb]============	chr22:19880392-19880639(-)$1	247	59	97	15.5693
c!!affffffiiiiiiiiimmmmiiiiiiiii4444ff	chr22:50037527-50037744(-)$1	217	130	168	13.9499
"""bb!!a[bbdddd!!bbmmmmbb]dddd]bb]a22b	chr16:89604292-89604561(+)$1	269	50	88	15.0590
cadddd"""ccc!!a!!bbmmmmbb]a22cccdddd]a	chr21:9912028-9912269(-)$1	241	105	143	15.4146
bb[eeeee[ffffff[cccmmmmcccffffff22eeee	chr22:49826853-49827099(-)$1	246	18	56	11.7323
####ccc[bbffffff[bbmmmmbb22ffffff333bb	chr21:39439244-39439519(-)$1	275	204	242	14.7907
ccc[dddd[ggggggg[bblllbb]ggggggg333ddd	chr16:1428012-1428256(-)$1	244	178	216	12.6241
eeeeebb[ccc[dddd[bbmmmmbb22dddd]cccbbb	chr4:520234-520508(+)$1	274	115	153	13.2372
[bb####bb[dddd!!cccmmmmccc]ddddbbbbeee	chr17:20798765-20799049(+)$1	284	178	216	12.4922
=========!!eeeee[bbmmmmbbeeeee========	chr22:49934973-49935184(-)$1	211	68	106	16.6955
g:::iiiiiiiiiccc[bbmmmmbb]ccc22iiiiiii	chr19:932918-933213(+)$1	295	187	225	13.9089
========"""dddd[cccmmmmccc]dddd=======	chr2:99186341-99186624(+)$1	283	14	52	15.6737
ccc[iiiiiiiiibbbbbbmmmmbb]bb]bb]iiiiii	chr16:85645573-85645838(+)$1	265	33	71	14.3510
dddd[dddd[bb[bb[cccmmmmcccbb333bb22ddd	chr7:1886488-1886710(-)$1	222	90	128	11.8479
=====####bb[dddd[bbmmmmbb]dddd]bb4444=	chr16:1406836-1407117(+)$1	281	54	92	16.6339

#otherMatches

#Seq PSSM
GUCCCACACAGCACCUGCCAUGAGGAGUGGUGUUGGGG	chr4:1236398-1236656(-)$1	258	202	240	16.1596
UCUCCGUCCCGCUGUGCCCCGUUGGGCCCACCGCCUGG	chr19:578195-578419(+)$1	224	24	62	13.4401
cggggaaaggaagucaccaggaaugggcgcaucuucaa	chr22:48249050-48249318(+)$1	268	94	132	13.4119
GUAUCAGUUACUAUGGAGUGGGAAAGCCGAGUGCUGAG	chr16:89028471-89028694(-)$1	223	8	46	13.0154
GAUCCUCUUGGAGGGCAGCUUCAUGUAAGUCUUCCUGG	chr22:19875050-19875306(-)$1	256	60	98	11.5109
GGAGAAGCAGCCUUUGGUGGUUGCACAGGGGCCCGGCU	chr3:196694286-196694519(-)$1	233	111	149	17.9512
GGGGACUGGGCAGAUGCUGUGAAGGCACCAUCCGUGCA	chr16:89040103-89040331(-)$1	228	52	90	11.4922
GCAGAAGGCAGGGGUGAUGGAAGCAGAGCCCCCACCUU	chr19:2047774-2048060(-)$1	286	211	249	14.0333
agugggcaguguccccauucacagaugggaaacugagg	chr16:88565915-88566200(+)$1	285	182	220	12.2598
CCGCCACCUGGGCUGCACCCUCAGGGCUCCGGGUGGUU	chr16:88527478-88527798(+)$1	320	280	318	14.6800
GUCAGGGUCUGGAGGAAGGGCAGCCUGAUUUAGUUUGU	chr1:246137213-246137465(-)$1	252	92	130	12.9800
GUCUGUGGCAUCAGGGUCUGCAGAGCCCAGAUGCGGGA	chr19:34874498-34874813(+)$1	315	30	68	14.4203
AGCACUGGUCGCUCCUGCCUGGGGGUGGGAGUGAAUGG	chr13:114873540-114873766(-)$1	226	158	196	15.1509
CCUCAUCGGAUGCCAGGGUUUCCGCGCAGGCAUGGAGA	chr7:1100289-1100574(-)$1	285	59	97	15.3538
GAAGCGACCUCUAGGGUGAGUUUUCAGGGUGGGGGUGG	chr19:5117293-5117541(+)$1	248	10	48	11.4359
AGGGACCUGCGGAUGUGGGGAUGCCGACUGACGGACAG	chr7:23454454-23454796(-)$1	342	286	324	13.6929
CCUUCAGGGACAGGCAGGGGUGGCUUUGCCUGUCUCAG	chr16:1424342-1424591(-)$1	249	173	211	16.3596
AAAUCUUUUCUGAGCGCACCUAGGUGGCUUCUGACUUU	chr19:15348962-15349227(-)$1	265	27	65	12.7734
UCAAAGAGCAAAGGUCAUUAUGAGGUGACUGGGAGCGA	chr11:62284211-62284455(-)$1	244	54	92	14.2067
UUAGGGCUGGCCUUACCCUUUGCAGGGAAGAGAUUGAA	chr4:2396427-2396693(-)$1	266	41	79	12.8157
CCUCUAAGCUCACUGGAGCAAUCGCACCACAGUUAGGG	chr22:49861573-49861837(-)$1	264	136	174	15.2727
GCUUCACGGUGGAGAAUGCGGACGCGGUGUGCGCCAGG	chr13:108518204-108518477(-)$1	273	74	112	14.2007
CAGGAGCUGUGGGGCCCGUGAGUGCUGGGCCUUGACCC	chr21:45349522-45349771(+)$1	249	121	159	13.7092
GCGGUUCCCCAAACUUUGUACGCGCGAGGGUGGGCGGA	chr13:92000556-92000833(+)$1	277	210	248	10.7867
GGUCUGAGCUGUCAGGAGCACAUGCGGUCUGGGGUCUG	chr13:114527192-114527475(+)$1	283	175	213	14.6694
ggggagccggagcgCACCAUGGAGGCGGCGGCAGGCGG	chr1:2160051-2160335(+)$1	284	136	174	11.7831
CUGCUGGGGCUGGGGCAGUCUCAGCCACUCCCAGCCCC	chr7:1893825-1894080(-)$1	255	141	179	16.1713
UUGCAGGGAGGGCGACCUGUAUGCGGAGCGCCGUUCCU	chr9:140172950-140173201(+)$1	251	148	186	15.3473
ACUGACGCCAUGGCCUGCACAUGUGCAGCUCUGGACAG	chr7:2162398-2162654(-)$1	256	155	193	12.4679
CUUGCCCAGGUAACUGCCCAUGAGGAGCAGUUCGGCAG	chr7:76255993-76256260(+)$1	267	212	250	14.7237
GGCAUGUGAGGUGUUCGUUGUGAGACGUACAAUGGUAC	chr20:62902781-62903041(+)$1	260	17	55	12.3321
gauuaggguuuucagaauuuagaaguuuacaggagaaa	chr11:43501218-43501585(+)$1	367	144	182	11.3116
cacgcauuagagcaggggcgaaaguuccugaaauggua	chr8:58118373-58118632(+)$1	259	196	234	13.0027
GCUUCACUUUUGUGCAGUGGACACAAGCGCAGAGGUGA	chr22:19880392-19880639(-)$1	247	59	97	15.5693
AGGCAAGGCCGUUUCUGGAGUCUUCUGGAAGCUCUGGG	chr22:50037527-50037744(-)$1	217	130	168	13.9499
GGAGAAGCUGAGGCCCAGCAGGAGCCGGCCGUCUGACU	chr16:89604292-89604561(+)$1	269	50	88	15.0590
ACGUGCAGGGUGGGCGAGCGACUGCAGGACACGCACAG	chr21:9912028-9912269(-)$1	241	105	143	15.4146
GCAGGGAGAGGGCGGAUGGACGGCCACUGCUCAGCUCC	chr22:49826853-49827099(-)$1	246	18	56	11.7323
agaaaggacucucccuagagcauucagagggaguaugg	chr21:39439244-39439519(-)$1	275	204	242	14.7907
GCCAGGCUGAGCCUGCAGUGGCACAGCAGGUUAGGAGC	chr16:1428012-1428256(-)$1	244	178	216	12.6241
AGAGGGGAGGUGAGCUGGUAGGUGCAGGGCUGACCCCG	chr4:520234-520508(+)$1	274	115	153	13.2372
UGUCCCUGACAGGACGGCGCGCCCGCAUCCUUCACCUG	chr17:20798765-20799049(+)$1	284	178	216	12.4922
GAGGGCUCCGUGGGUGCGUACUCACCGCCCGGGGCCCU	chr22:49934973-49935184(-)$1	211	68	106	16.6955
CAGAGAGGCCGGGGCCUUGGUGACGUGGUGACUUGGCC	chr19:932918-933213(+)$1	295	187	225	13.9089
AGUGAGGCUGUGACACUUCAGAUGAGAUGUUGUUUCAC	chr2:99186341-99186624(+)$1	283	14	52	15.6737
AGCGCUGGGGCGGCCGCCCAGGGGGUGCUGGUUUGCCC	chr16:85645573-85645838(+)$1	265	33	71	14.3510
GGAGCCAUCAGCAGGAGGCGACCGUCCCACCGCAAGAU	chr7:1886488-1886710(-)$1	222	90	128	11.8479
CGGGCGGGAGUGUGCGGGCGAGAGUGUGCGGGCGGGGG	chr16:1406836-1407117(+)$1	281	54	92	16.6339

#DB
(((((...(((((((..((....))...))))))))))	chr4:1236398-1236656(-)$1	1	202	240	16.1596
(((((((((((.((.((((....)))).)).))...))	chr19:578195-578419(+)$1	1	24	62	13.4401
(.((...((((.((..(((....)))..)).))))...	chr22:48249050-48249318(+)$1	1	94	132	13.4119
...(((((.(((.(((..(....)..))))))))))).	chr16:89028471-89028694(-)$1	1	8	46	13.0154
...((....(((((((.((.....))..))))))).))	chr22:19875050-19875306(-)$1	1	60	98	11.5109
((((((((.(((((((.((....)))))))))...)))	chr3:196694286-196694519(-)$1	1	111	149	17.9512
(((..(((.((.((((.(((....))).)))).)).))	chr16:89040103-89040331(-)$1	1	52	90	11.4922
((.(((((..(((((..((....))..)))))..))))	chr19:2047774-2048060(-)$1	1	211	249	14.0333
..(((.((((...((((((....))))))..))))...	chr16:88565915-88566200(+)$1	1	182	220	12.2598
))((((((((((..((.((....)))))))))))))))	chr16:88527478-88527798(+)$1	1	280	318	14.6800
((((.((.(((((...(((....)))..))))).)).)	chr1:246137213-246137465(-)$1	1	92	130	12.9800
))((.(.(((((.(((.((....))))).))))).).)	chr19:34874498-34874813(+)$1	1	30	68	14.4203
(((.((..(((((((((((....)))))))))))....	chr13:114873540-114873766(-)$1	1	158	196	15.1509
((.((((..(((((.(.((....)).).)))))...))	chr7:1100289-1100574(-)$1	1	59	97	15.3538
....(.(((((((...(((....)))...))))))).)	chr19:5117293-5117541(+)$1	1	10	48	11.4359
(((..((((((...((.((....)).))...))..)))	chr7:23454454-23454796(-)$1	1	286	324	13.6929
(.(((.(((((((((((((....))))))))))))).)	chr16:1424342-1424591(-)$1	1	173	211	16.3596
(((((...((.((((.(((....)))))))..))....	chr19:15348962-15349227(-)$1	1	27	65	12.7734
((..(..((...(((((((....)))))))....))..	chr11:62284211-62284455(-)$1	1	54	92	14.2067
((....((...(((.((((....)))))))))....))	chr4:2396427-2396693(-)$1	1	41	79	12.8157
(((((((.((...(((.((....)).))).))))))))	chr22:49861573-49861837(-)$1	1	136	174	15.2727
.(((...((((.(.(.(((....))).).).)))))))	chr13:108518204-108518477(-)$1	1	74	112	14.2007
((((((...((((((((((....)).))))))))...)	chr21:45349522-45349771(+)$1	1	121	159	13.7092
))).(((((((..((((((....)))))).)))).)))	chr13:92000556-92000833(+)$1	1	210	248	10.7867
.(.((.((.(.(((((.((....))..))))).).)).	chr13:114527192-114527475(+)$1	1	175	213	14.6694
.((..(((....(((.((.....))..)))...)))..	chr1:2160051-2160335(+)$1	1	136	174	11.7831
)))))((((((((((..((....))..).)))))))))	chr7:1893825-1894080(-)$1	1	141	179	16.1713
(((((((((.((((..(((....)))..)))).)))))	chr9:140172950-140173201(+)$1	1	148	186	15.3473
.(((...(((.(((.((((....))))))).))).)))	chr7:2162398-2162654(-)$1	1	155	193	12.4679
(((((((.(.(((((((((....)).)))))).).).)	chr7:76255993-76256260(+)$1	1	212	250	14.7237
(((.((((...(((.((((....)))).)))....)))	chr20:62902781-62903041(+)$1	1	17	55	12.3321
..((((..(((((.(((((....)))))...)))))..	chr11:43501218-43501585(+)$1	1	144	182	11.3116
((((.((((...(((((((....)))))))...)))).	chr8:58118373-58118632(+)$1	1	196	234	13.0027
((.((((((((((((..((....)).))))))))))))	chr22:19880392-19880639(-)$1	1	59	97	15.5693
(..((((((((((((((((....)))))))))....))	chr22:50037527-50037744(-)$1	1	130	168	13.9499
...((..(.((((((..((....)).)))).)).)..)	chr16:89604292-89604561(+)$1	1	50	88	15.0590
((((((...(((..(..((....)).)..))))))).)	chr21:9912028-9912269(-)$1	1	105	143	15.4146
((.(((((.((((((.(((....)))))))))..))))	chr22:49826853-49827099(-)$1	1	18	56	11.7323
....(((.((((((((.((....))..))))))...))	chr21:39439244-39439519(-)$1	1	204	242	14.7907
(((.((((.(((((((.((...)).)))))))...)))	chr16:1428012-1428256(-)$1	1	178	216	12.6241
)))))((.(((.((((.((....))..)))).)))))(	chr4:520234-520508(+)$1	1	115	153	13.2372
.((....((.((((..(((....))).)))))))))))	chr17:20798765-20799049(+)$1	1	178	216	12.4922
(((((((((..(((((.((....)))))))))))))))	chr22:49934973-49935184(-)$1	1	68	106	16.6955
)...((((((((((((.((....)).)))..)))))))	chr19:932918-933213(+)$1	1	187	225	13.9089
((((((((...((((.(((....))).)))))))))))	chr2:99186341-99186624(+)$1	1	14	52	15.6737
(((.(((((((((((((((....)).)).)).))))))	chr16:85645573-85645838(+)$1	1	33	71	14.3510
((((.((((.((.((.(((....)))))...))..)))	chr7:1886488-1886710(-)$1	1	90	128	11.8479
(((((....((.((((.((....)).)))).))....)	chr16:1406836-1407117(+)$1	1	54	92	16.6339

#PSSM
c : 0.16	e : 0.12	= : 0.12	g : 0.10	[ : 0.08	# : 0.06	d : 0.06	" : 0.04	b : 0.04	: : 0.04	h : 0.04	f : 0.04	G : 0.02	! : 0.02	D : 0.02	
c : 0.14	= : 0.12	e : 0.10	b : 0.08	g : 0.08	# : 0.06	d : 0.06	[ : 0.04	" : 0.04	: : 0.04	h : 0.04	f : 0.04	a : 0.04	! : 0.04	G : 0.02	D : 0.02	
c : 0.16	= : 0.14	d : 0.10	b : 0.08	[ : 0.08	g : 0.08	e : 0.06	# : 0.06	: : 0.06	" : 0.04	h : 0.04	! : 0.04	f : 0.02	
= : 0.16	e : 0.10	b : 0.10	c : 0.10	d : 0.10	! : 0.08	[ : 0.08	g : 0.06	: : 0.06	# : 0.06	h : 0.02	f : 0.02	a : 0.02	
= : 0.16	c : 0.12	e : 0.10	d : 0.10	b : 0.08	[ : 0.08	" : 0.06	! : 0.06	a : 0.04	# : 0.04	f : 0.04	i : 0.04	h : 0.02	g : 0.02	
d : 0.16	= : 0.14	c : 0.12	" : 0.10	# : 0.08	[ : 0.08	e : 0.06	b : 0.06	i : 0.06	! : 0.04	a : 0.02	g : 0.02	f : 0.02	
= : 0.16	" : 0.14	d : 0.14	c : 0.10	b : 0.08	! : 0.08	e : 0.06	# : 0.06	i : 0.06	g : 0.04	[ : 0.02	f : 0.02	
d : 0.18	= : 0.16	[ : 0.10	" : 0.08	e : 0.08	b : 0.08	c : 0.06	! : 0.06	i : 0.06	# : 0.04	g : 0.02	f : 0.02	a : 0.02	
= : 0.14	d : 0.14	[ : 0.14	b : 0.10	" : 0.10	# : 0.06	e : 0.06	i : 0.06	g : 0.04	! : 0.04	c : 0.04	a : 0.02	f : 0.02	
b : 0.16	g : 0.10	" : 0.10	d : 0.08	c : 0.08	= : 0.08	e : 0.08	[ : 0.08	i : 0.06	! : 0.04	f : 0.04	h : 0.02	a : 0.02	# : 0.02	
" : 0.14	b : 0.12	g : 0.10	d : 0.10	e : 0.10	= : 0.08	i : 0.08	c : 0.06	[ : 0.06	f : 0.04	h : 0.02	# : 0.02	a : 0.02	! : 0.02	
e : 0.14	[ : 0.12	g : 0.10	c : 0.10	" : 0.10	d : 0.10	= : 0.08	i : 0.08	f : 0.06	h : 0.02	! : 0.02	# : 0.02	b : 0.02	
d : 0.16	g : 0.14	e : 0.12	c : 0.08	i : 0.08	[ : 0.06	" : 0.06	! : 0.06	= : 0.06	f : 0.06	b : 0.04	a : 0.02	h : 0.02	
c : 0.16	d : 0.16	g : 0.12	f : 0.10	b : 0.08	e : 0.08	" : 0.06	= : 0.06	! : 0.04	[ : 0.04	i : 0.04	h : 0.02	
g : 0.12	d : 0.12	[ : 0.10	c : 0.10	f : 0.10	e : 0.08	b : 0.08	! : 0.06	= : 0.06	a : 0.06	" : 0.04	h : 0.02	i : 0.02	
! : 0.18	d : 0.14	[ : 0.12	g : 0.10	c : 0.08	f : 0.08	b : 0.06	e : 0.06	" : 0.04	= : 0.04	a : 0.02	h : 0.02	i : 0.02	
[ : 0.31	c : 0.20	! : 0.14	d : 0.08	f : 0.06	= : 0.04	g : 0.04	b : 0.04	h : 0.02	e : 0.02	i : 0.02	
b : 0.49	c : 0.22	d : 0.08	f : 0.04	= : 0.04	g : 0.04	! : 0.02	e : 0.02	i : 0.02	
b : 0.47	c : 0.22	d : 0.08	f : 0.04	= : 0.04	g : 0.04	a : 0.02	n : 0.02	e : 0.02	i : 0.02	
m : 0.91	n : 0.04	c : 0.02	l : 0.02	
m : 0.93	n : 0.04	l : 0.02	
m : 0.93	n : 0.04	l : 0.02	
m : 0.93	n : 0.04	b : 0.02	
b : 0.47	c : 0.20	d : 0.08	f : 0.04	= : 0.04	g : 0.04	a : 0.02	n : 0.02	m : 0.02	e : 0.02	i : 0.02	
b : 0.47	c : 0.22	d : 0.08	f : 0.04	= : 0.04	g : 0.04	2 : 0.02	e : 0.02	i : 0.02	] : 0.02	
c : 0.25	] : 0.22	2 : 0.14	d : 0.08	g : 0.08	b : 0.04	f : 0.04	= : 0.04	e : 0.04	3 : 0.02	i : 0.02	
2 : 0.20	d : 0.14	c : 0.10	g : 0.08	f : 0.08	b : 0.08	= : 0.06	] : 0.06	3 : 0.04	a : 0.04	e : 0.04	h : 0.02	i : 0.02	
c : 0.14	d : 0.12	2 : 0.10	f : 0.10	] : 0.08	g : 0.08	e : 0.08	= : 0.08	b : 0.06	3 : 0.04	a : 0.04	h : 0.02	i : 0.02	
d : 0.16	c : 0.14	g : 0.12	e : 0.10	f : 0.10	= : 0.08	] : 0.08	3 : 0.08	b : 0.04	h : 0.02	i : 0.02	2 : 0.02	
d : 0.16	g : 0.14	c : 0.12	e : 0.12	= : 0.08	b : 0.06	3 : 0.06	f : 0.06	2 : 0.04	] : 0.04	i : 0.04	a : 0.02	h : 0.02	
] : 0.12	d : 0.12	g : 0.10	e : 0.10	= : 0.10	3 : 0.10	c : 0.06	2 : 0.06	b : 0.06	f : 0.06	i : 0.04	4 : 0.02	h : 0.02	
b : 0.16	d : 0.12	e : 0.12	= : 0.12	g : 0.10	c : 0.06	i : 0.06	f : 0.06	4 : 0.04	3 : 0.04	] : 0.04	2 : 0.02	h : 0.02	
b : 0.14	= : 0.12	d : 0.10	e : 0.10	g : 0.08	3 : 0.08	] : 0.08	4 : 0.08	i : 0.06	2 : 0.04	c : 0.04	h : 0.02	f : 0.02	
= : 0.14	d : 0.12	3 : 0.10	4 : 0.10	g : 0.08	2 : 0.08	e : 0.06	b : 0.06	c : 0.06	i : 0.06	] : 0.04	a : 0.04	h : 0.02	
3 : 0.12	= : 0.12	d : 0.10	] : 0.10	4 : 0.10	g : 0.08	e : 0.08	b : 0.08	i : 0.06	2 : 0.04	c : 0.04	> : 0.02	a : 0.02	
= : 0.14	e : 0.12	d : 0.12	3 : 0.10	4 : 0.10	b : 0.08	c : 0.08	i : 0.06	] : 0.04	a : 0.04	g : 0.04	> : 0.02	2 : 0.02	
= : 0.14	] : 0.12	d : 0.12	e : 0.10	b : 0.08	c : 0.08	2 : 0.08	4 : 0.06	i : 0.06	3 : 0.04	f : 0.04	> : 0.02	g : 0.02	
= : 0.14	c : 0.14	b : 0.10	d : 0.10	e : 0.08	2 : 0.08	i : 0.06	4 : 0.04	3 : 0.04	g : 0.04	a : 0.04	f : 0.04	C : 0.02	> : 0.02	] : 0.02	

#score	666.9048143467083
#seq	48
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_UTR_m2_run1.txt

#BEAR
fffffeeeee$$$$$cccmmmmccc4444eeeee]ffff	chr16:89818445-89818665(-)$1	220	164	203	14.5455
ddd!!a[==========oooooo==========]a333d	chr16:87364958-87365216(-)$1	258	153	192	17.5286
iiiiiiiii####cccooooooccc333iiiiiiiii]d	chr14:70238281-70238527(+)$1	246	67	106	18.4257
[ccc[ggggggg!!a[bbmmmmbb]a22gggggggcccb	chr16:31200986-31201215(+)$1	229	113	152	15.0291
iiggggggg!!gggggggmmmmggggggg333ggggggg	chr2:98272638-98272891(-)$1	253	150	189	15.2939
b]gggggggccc"""ccclllccc333ccc:ccceeeee	chr3:38164288-38164582(-)$1	294	49	88	14.2794
:a[ccc[===========mmmm===========]ccc]a	chr9:117053060-117053286(+)$1	226	6	45	16.7083
iiii[a[eeeee"""cccooooooccc]eeeeea]iiii	chr17:27076860-27077167(+)$1	307	150	189	15.5223
b[dddd[eeeee!!cccnnnnnccc22eeeee4444ddd	chr16:88718534-88718812(-)$1	278	25	64	12.8760
gggggg==========rrrrrrrrr==========22gg	chr12:112194354-112194688(+)$1	334	159	198	14.6951
=============!!cccmmmmccc22============	chr14:39651077-39651332(+)$1	255	153	192	20.5947
eeee####==========oooooo==========22eee	chr17:7474854-7475111(+)$1	257	79	118	15.9644
fff"""==========[bblllbb==========4444f	chr16:684639-684898(-)$1	259	42	81	16.0669
ffffff[dddd"""a[bbmmmmbb]a333dddd]fffff	chr3:184102704-184102936(+)$1	232	124	163	13.1236
ffdddd[a[ccc"""cccmmmmcccccc]a]ddddGGGG	chr12:6759757-6760072(-)$1	315	211	250	12.5310
"ccc[cccbb[ccc[aooooooaccc]bb]ccc333ccc	chr11:831435-831761(+)$1	326	257	296	14.3152
==========$$$$$ccclllccc4444==========]	chr19:3958427-3958691(-)$1	264	77	116	18.2874
ffffff!!eeeee!!cccmmmmccc22eeeee]ffffff	chr17:73823393-73823711(-)$1	318	276	315	14.7497
b[bb[ffffff####cccmmmmccc333ffffff]bb]b	chr6:31931207-31931436(+)$1	229	137	176	14.8745
!!ffffffccc!!cccooooooccc22ccc22ffffffb	chr3:184101265-184101488(+)$1	223	66	105	13.9064
===ddddccc[gggggggmmmmggggggg333ccc22dd	chr16:28885228-28885488(+)$1	260	111	150	13.1110
ee[eeeee!!ccc!!ccclllcccccceeeeeeeeee33	chr19:50361748-50362003(+)$1	255	18	57	13.7991
b==========!!cccooooooccc22==========:E	chr1:227148909-227149186(+)$1	277	177	216	17.1236
dd[bbggggggg"""cccmmmmccc]ggggggg]bbddd	chr3:123633977-123634245(-)$1	268	8	47	15.7961
"ccc==============mmmm==============]cc	chr16:2138823-2139059(-)$1	236	156	195	18.4497
==========!!a[cccooooooccc]a22=========	chr3:142775306-142775590(+)$1	284	61	100	18.3172
eeeeeeee[a[ccc!!bbmmmmbb22ccc]a]eeeee]e	chr20:61599438-61599649(+)$1	211	99	138	12.7111
[bb!!bb"""iiiiiiiiillliiiiiiiii4444bb22	chr7:44612071-44612302(-)$1	231	185	224	13.6427
dd!!ggggggg####cccmmmmcccggggggg]ddddbb	chr2:73453066-73453343(+)$1	277	207	246	15.4567
==[bbbbeeeee####ccclllccc333eeeee]bb]bb	chr17:48629361-48629640(+)$1	279	23	62	14.2296
==========bb[cccoooooocccbb]==========2	chrX:54957152-54957434(+)$1	282	120	159	16.8220
iiiiiii"""dddd[bboooooobb]ddddiiiiiiiii	chr17:39979097-39979348(+)$1	251	92	131	14.1528
)ccc[bb####bb!!cccmmmmccc22bb4444bb]ccc	chr16:31202672-31202910(+)$1	238	159	198	14.5757
e[cccggggggga[ddddmmmmdddd333a]ggggggg]	chr17:80398981-80399237(+)$1	256	19	58	14.4184
=======[==========mmmm==========]======	chr13:107195785-107196028(-)$1	243	57	96	19.0689
ggg===========[cccmmmmccc22===========8	chr3:184102303-184102561(+)$1	258	49	88	19.7098
:::cccggggggga[cccmmmmccc]a]ggggggg]ccc	chr16:30016431-30016703(+)$1	272	230	269	13.4399
iiiiiiiii[ccc[cccooooooccc]ccciiiiiiiii	chr1:70716601-70716864(+)$1	263	87	126	17.1684
fffff!!iiiiiiiiibbnnnnnbb]iiiiiiiiiffff	chr20:61920763-61920993(+)$1	230	110	149	13.6023
gg!!dddd"""ccc[cccmmmmccc22ccc]dddd]ggg	chr11:381566-381812(+)$1	246	84	123	15.5252
ee[bb[eeeee[a[cccooooooccc]aeeeeebb]eee	chr20:61472027-61472286(+)$1	259	129	168	13.6227
ccc"""eeeee[ccccccmmmmccc]ccc]eeeee4444	chr7:99751437-99751736(+)$1	299	139	178	15.1744
eee####bb!!abb!!ccclllccc333bb]a22bb444	chr1:150325428-150325684(+)$1	256	162	201	13.6333
ddd[ccc[cccccc[cccmmmmccc]ccc]ccc333ccc	chr17:40268968-40269188(-)$1	220	40	79	15.5946
ccc[aiiiiiiiiicccnnnnnccc4444iiiiiiiii0	chr1:154935915-154936142(-)$1	227	149	188	15.9555
"""==============oooooo==============33	chr16:71962718-71962964(+)$1	246	21	60	18.7214
ggg[ccc!!dddd!!cccmmmmccc]ddddccc]ggggg	chr1:53364745-53364966(-)$1	221	60	99	15.1315

#otherMatches

#Seq PSSM
GCCGCGUGCUAUUAAGAUAUUUAUUgccaggcgcggugg	chr16:89818445-89818665(-)$1	220	164	203	14.5455
CCCCCGGGGUCUUCAUCCUCUUCGAUGAGGACCGCUUCG	chr16:87364958-87365216(-)$1	258	153	192	17.5286
UUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAAGC	chr14:70238281-70238527(+)$1	246	67	106	18.4257
AUUGACUGGUUUGAUGGUAUGUAUGAGAAGGCUGGCAGA	chr16:31200986-31201215(+)$1	229	113	152	15.0291
CAGAGGAUGCACGGUGGCUAGAGCCGCUGCACUAUCCUU	chr2:98272638-98272891(-)$1	253	150	189	15.2939
GGUCCCAGGCUGGAGGCGCUACGCAGACAGUCCUGCUGC	chr3:38164288-38164582(-)$1	294	49	88	14.2794
UCCUCUGCCUGCUUUCUUAACAGGGGGAGCAGGGAGACG	chr9:117053060-117053286(+)$1	226	6	45	16.7083
GCCCCCUCUGGUUAUUUAUUUCCUUAGUGCCAGGAGGGC	chr17:27076860-27077167(+)$1	307	150	189	15.5223
CAGGGAGUCCUGCGGCCGCCCAGGUGUCAGGAGAGGUCC	chr16:88718534-88718812(-)$1	278	25	64	12.8760
UGGGACAGAGUCUGGAAAGCUGGUCUUCAGGCUCUCAGU	chr12:112194354-112194688(+)$1	334	159	198	14.6951
UUGCAUAAUUUUGUAAGAGUUAUUUAUCAAAAUUAUGUG	chr14:39651077-39651332(+)$1	255	153	192	20.5947
CAAUUUCUGUAUUUUUUUUUCUUUGAGAGAAUACUUGUU	chr17:7474854-7475111(+)$1	257	79	118	15.9644
UGGCAGGUGGCUUGGGUGGCACCCCCCAGGCCAUGACUC	chr16:684639-684898(-)$1	259	42	81	16.0669
GCCCUGGUGCUACCCCCUGUGAAGAGCCAAGCAGCAGGG	chr3:184102704-184102936(+)$1	232	124	163	13.1236
UCCUCUGUGCCAAGAGGAUUCAUCCUGGGAGAGGGGGCA	chr12:6759757-6760072(-)$1	315	211	250	12.5310
UUCCCAGUGCCCGGUGACCAGCCCCGAGUGACUCACGGA	chr11:831435-831761(+)$1	326	257	296	14.3152
CUUGGUGGGGUCUUCCACUGUGUGCCCUUCUCGCCGAGG	chr19:3958427-3958691(-)$1	264	77	116	18.2874
CAGACGGAAGCAGAAAGGACAGUUUGGCUGCUGUGUCUG	chr17:73823393-73823711(-)$1	318	276	315	14.7497
CGAGAUGGGGGAAAGAGUUAGGGCUGGGCCCCCAGCUGG	chr6:31931207-31931436(+)$1	229	137	176	14.8745
AGUGAGGUGGUGGCCAUGACACUGGAGACCAAGCCUCAG	chr3:184101265-184101488(+)$1	223	66	105	13.9064
UUGGGCUCCAUGAGCUCCUUGAGGGGCUCUUCUGGUCAG	chr16:28885228-28885488(+)$1	260	111	150	13.1110
GGAGAAGCCAGAGCUGGGGGUCCCCUCGCUUCCCCGCAG	chr19:50361748-50362003(+)$1	255	18	57	13.7991
AUGGCUGCCAUAUUGGGAGACACCAUCAUGGUGGCUAAA	chr1:227148909-227149186(+)$1	277	177	216	17.1236
UCUGCCCUUUCAAAACAGGAUUCUGAUGAAGGGAGUGAA	chr3:123633977-123634245(-)$1	268	8	47	15.7961
GACUGUGUGUGUGUGUGUGUGCGCGCGCGCACGCGCGAG	chr16:2138823-2139059(-)$1	236	156	195	18.4497
ACAAAAAAUCAAAUGAAAGAGCAUUCCUGGGGUUUUUUG	chr3:142775306-142775590(+)$1	284	61	100	18.3172
CGGGCUAGAGACCCUUGCCUGUGUCCGGGACCCUGGCGC	chr20:61599438-61599649(+)$1	211	99	138	12.7111
ACGAGAGCGGGGUGGCUGGAAGCCAGUUACUACAAUUAG	chr7:44612071-44612302(-)$1	231	185	224	13.6427
AGUUGGCUCAGACUCUGCACUGGCACUGAGCCUUUCACA	chr2:73453066-73453343(+)$1	277	207	246	15.4567
CUGGACCUGUAUGAGGCCUCACAGGAGAGUGCGUGGCUC	chr17:48629361-48629640(+)$1	279	23	62	14.2296
CACUGGUGUUGGCUUCUGCAGUGGACCAAGCACCAGUGG	chrX:54957152-54957434(+)$1	282	120	159	16.8220
CUCCAGUGGAGGCUGAGCUGACCCUGGGCUGCUGGAGGC	chr17:39979097-39979348(+)$1	251	92	131	14.1528
UUCCAAUUCCUGAUCACCCAAGGGUUUUUUUGUGUCGGA	chr16:31202672-31202910(+)$1	238	159	198	14.5757
CGCCCGUGGAGACAGCUGUUCUCAGCAGGGCUCUCCGCA	chr17:80398981-80399237(+)$1	256	19	58	14.4184
ACUUUUUGuuuuuuuauauauuuauaaaaaaaGAAAAAG	chr13:107195785-107196028(-)$1	243	57	96	19.0689
CCCGAGGGGCUCAUAUGCUGCUGCAGAAUGAGCUCUUCC	chr3:184102303-184102561(+)$1	258	49	88	19.7098
ACGAUCCUGAGCACGGUCCCUCGGCAGAUGUUCAGCGAU	chr16:30016431-30016703(+)$1	272	230	269	13.4399
AUGGUGAAAUCUGAUUGAGUAACCAAGCAGUUUUACUAU	chr1:70716601-70716864(+)$1	263	87	126	17.1684
UUCCUCGGGGGUAGGGGGACGGCCCACUCUGCCCCAGGG	chr20:61920763-61920993(+)$1	230	110	149	13.6023
CUCUGCCCCCGGCCCCAGGGUCCUGCAGGCAGGGCUGGA	chr11:381566-381812(+)$1	246	84	123	15.5252
GCAGGCGGGUGACGUCCAGGAGAGGGAGCGCCCCUGGCU	chr20:61472027-61472286(+)$1	259	129	168	13.6227
UUGAUGUCUGAGCCUGCCGGAGGGCGAGGGUCGGAGAAG	chr7:99751437-99751736(+)$1	299	139	178	15.1744
AUAUCUUGCUCCCCUCCUGAGUCAGCCUGGUGUUGCCCU	chr1:150325428-150325684(+)$1	256	162	201	13.6333
GGGCGGGUCAUCGGUGGCAUCUGCUUCCGCAUGUUUCCC	chr17:40268968-40269188(-)$1	220	40	79	15.5946
UGAGUGCUUGUCAUGGAAAAUGUCCUGUGGUGACAGGCC	chr1:154935915-154936142(-)$1	227	149	188	15.9555
UAGCUAAGGUCAUCCUUCCCCACAGGGGUGGCUUUGGGA	chr16:71962718-71962964(+)$1	246	21	60	18.7214
UUUUCCCUAGGCCCCCAUUGCCGUGCGGCUGGGCAAAGU	chr1:53364745-53364966(-)$1	221	60	99	15.1315

#DB
((((((((((.....(((....)))....))))).))))	chr16:89818445-89818665(-)$1	1	164	203	14.5455
(((..(.((((((((((......)))))))))).)...)	chr16:87364958-87365216(-)$1	1	153	192	17.5286
(((((((((....(((......)))...))))))))).)	chr14:70238281-70238527(+)$1	1	67	106	18.4257
.(((.(((((((..(.((....)).)..)))))))))))	chr16:31200986-31201215(+)$1	1	113	152	15.0291
))(((((((..(((((((....)))))))...)))))))	chr2:98272638-98272891(-)$1	1	150	189	15.2939
).)))))))(((...(((...)))...))).((((((((	chr3:38164288-38164582(-)$1	1	49	88	14.2794
.(.(((.(((((((((((....))))))))))).))).)	chr9:117053060-117053286(+)$1	1	6	45	16.7083
((((.(.(((((...(((......))).)))))).))))	chr17:27076860-27077167(+)$1	1	150	189	15.5223
(.((((.(((((..(((.....)))..)))))....)))	chr16:88718534-88718812(-)$1	1	25	64	12.8760
((((((((((((((((.........))))))))))..))	chr12:112194354-112194688(+)$1	1	159	198	14.6951
(((((((((((((..(((....)))..))))))))))))	chr14:39651077-39651332(+)$1	1	153	192	20.5947
((((....((((((((((......))))))))))..)))	chr17:7474854-7475111(+)$1	1	79	118	15.9644
(((...((((((((((.((...))))))))))))....)	chr16:684639-684898(-)$1	1	42	81	16.0669
((((((.((((...(.((....)).)...)))).)))))	chr3:184102704-184102936(+)$1	1	124	163	13.1236
))((((.(.(((...(((....)))))).).))))))))	chr12:6759757-6760072(-)$1	1	211	250	12.5310
.(((.(((((.(((.(......)))).)).)))...)))	chr11:831435-831761(+)$1	1	257	296	14.3152
((((((((((.....(((...)))....)))))))))).	chr19:3958427-3958691(-)$1	1	77	116	18.2874
((((((..(((((..(((....)))..))))).))))))	chr17:73823393-73823711(-)$1	1	276	315	14.7497
(.((.((((((....(((....)))...)))))).)).)	chr6:31931207-31931436(+)$1	1	137	176	14.8745
..(((((((((..(((......)))..)))..)))))))	chr3:184101265-184101488(+)$1	1	66	105	13.9064
)))(((((((.(((((((....)))))))...)))..))	chr16:28885228-28885488(+)$1	1	111	150	13.1110
((.(((((..(((..(((...))))))))))))))))..	chr19:50361748-50362003(+)$1	1	18	57	13.7991
)((((((((((..(((......)))..)))))))))).)	chr1:227148909-227149186(+)$1	1	177	216	17.1236
((.(((((((((...(((....))).))))))).)))))	chr3:123633977-123634245(-)$1	1	8	47	15.7961
.(((((((((((((((((....)))))))))))))).))	chr16:2138823-2139059(-)$1	1	156	195	18.4497
((((((((((..(.(((......))).)..)))))))))	chr3:142775306-142775590(+)$1	1	61	100	18.3172
((((((((.(.(((..((....))..))).).))))).)	chr20:61599438-61599649(+)$1	1	99	138	12.7111
.((..((...(((((((((...)))))))))....))..	chr7:44612071-44612302(-)$1	1	185	224	13.6427
((..(((((((....(((....)))))))))).))))))	chr2:73453066-73453343(+)$1	1	207	246	15.4567
((.(((((((((....(((...)))...))))).)).))	chr17:48629361-48629640(+)$1	1	23	62	14.2296
((((((((((((.(((......))))).)))))))))).	chrX:54957152-54957434(+)$1	1	120	159	16.8220
(((((((...((((.((......)).)))))))))))))	chr17:39979097-39979348(+)$1	1	92	131	14.1528
.(((.((....((..(((....)))..))....)).)))	chr16:31202672-31202910(+)$1	1	159	198	14.5757
(.(((((((((((.((((....))))...).))))))).	chr17:80398981-80399237(+)$1	1	19	58	14.4184
(((((((.((((((((((....)))))))))).))))))	chr13:107195785-107196028(-)$1	1	57	96	19.0689
((((((((((((((.(((....)))..))))))))))).	chr3:184102303-184102561(+)$1	1	49	88	19.7098
...(((((((((((.(((....))).).))))))).)))	chr16:30016431-30016703(+)$1	1	230	269	13.4399
(((((((((.(((.(((......))).))))))))))))	chr1:70716601-70716864(+)$1	1	87	126	17.1684
(((((..(((((((((((.....)).)))))))))))))	chr20:61920763-61920993(+)$1	1	110	149	13.6023
((..((((...(((.(((....)))..))).)))).)))	chr11:381566-381812(+)$1	1	84	123	15.5252
((.((.(((((.(.(((......))).)))))))).)))	chr20:61472027-61472286(+)$1	1	129	168	13.6227
(((...(((((.((((((....))).))).)))))....	chr7:99751437-99751736(+)$1	1	139	178	15.1744
(((....((..(((..(((...)))...)).)..))...	chr1:150325428-150325684(+)$1	1	162	201	13.6333
(((.(((.((((((.(((....))).))).)))...)))	chr17:40268968-40269188(-)$1	1	40	79	15.5946
(((.(((((((((((((.....)))....))))))))).	chr1:154935915-154936142(-)$1	1	149	188	15.9555
...((((((((((((((......))))))))))))))..	chr16:71962718-71962964(+)$1	1	21	60	18.7214
(((.(((..((((..(((....))).))))))).)))))	chr1:53364745-53364966(-)$1	1	60	99	15.1315

#PSSM
= : 0.14	f : 0.12	e : 0.12	i : 0.10	d : 0.08	b : 0.08	g : 0.08	" : 0.06	[ : 0.04	: : 0.04	c : 0.04	! : 0.02	) : 0.02	
= : 0.17	f : 0.12	c : 0.12	i : 0.10	e : 0.10	d : 0.08	g : 0.08	[ : 0.06	] : 0.02	a : 0.02	! : 0.02	b : 0.02	: : 0.02	" : 0.02	
c : 0.14	= : 0.14	f : 0.12	g : 0.10	[ : 0.10	d : 0.08	i : 0.08	e : 0.06	b : 0.04	! : 0.04	: : 0.02	" : 0.02	
= : 0.17	c : 0.14	f : 0.10	! : 0.08	i : 0.08	b : 0.08	g : 0.06	d : 0.06	e : 0.06	[ : 0.06	" : 0.04	# : 0.02	
= : 0.19	f : 0.10	[ : 0.10	c : 0.10	g : 0.08	d : 0.08	i : 0.06	b : 0.06	! : 0.04	# : 0.04	" : 0.04	e : 0.04	a : 0.02	
= : 0.19	g : 0.14	c : 0.10	i : 0.08	d : 0.08	f : 0.08	e : 0.06	b : 0.06	a : 0.04	# : 0.04	" : 0.04	! : 0.02	[ : 0.02	
= : 0.23	g : 0.14	[ : 0.12	e : 0.10	i : 0.08	c : 0.06	b : 0.06	# : 0.04	! : 0.04	f : 0.04	d : 0.04	
= : 0.25	e : 0.17	g : 0.14	i : 0.08	# : 0.04	d : 0.04	c : 0.04	! : 0.04	f : 0.04	" : 0.04	[ : 0.04	a : 0.02	b : 0.02	
= : 0.29	e : 0.14	g : 0.14	i : 0.08	c : 0.06	" : 0.06	[ : 0.04	b : 0.04	! : 0.04	d : 0.02	f : 0.02	# : 0.02	
= : 0.29	e : 0.14	g : 0.10	c : 0.10	! : 0.06	" : 0.06	# : 0.04	d : 0.04	i : 0.04	b : 0.02	f : 0.02	a : 0.02	[ : 0.02	
= : 0.23	c : 0.12	e : 0.12	g : 0.10	! : 0.06	d : 0.06	[ : 0.06	i : 0.06	$ : 0.04	# : 0.04	f : 0.02	b : 0.02	" : 0.02	
= : 0.21	c : 0.17	g : 0.12	e : 0.08	# : 0.06	! : 0.06	i : 0.06	$ : 0.04	b : 0.04	d : 0.04	[ : 0.04	" : 0.02	a : 0.02	
= : 0.21	c : 0.14	" : 0.10	# : 0.08	! : 0.08	g : 0.06	a : 0.06	i : 0.06	$ : 0.04	d : 0.04	b : 0.04	e : 0.02	[ : 0.02	
= : 0.19	c : 0.19	! : 0.14	" : 0.10	[ : 0.08	# : 0.06	i : 0.06	$ : 0.04	g : 0.04	d : 0.02	a : 0.02	b : 0.02	
c : 0.21	= : 0.17	! : 0.14	[ : 0.12	" : 0.08	# : 0.06	$ : 0.04	a : 0.04	g : 0.04	i : 0.04	d : 0.02	
c : 0.57	= : 0.17	[ : 0.04	g : 0.04	! : 0.04	i : 0.04	a : 0.02	# : 0.02	b : 0.02	d : 0.02	
c : 0.53	= : 0.12	o : 0.10	b : 0.10	g : 0.04	r : 0.02	[ : 0.02	i : 0.02	d : 0.02	
c : 0.42	o : 0.23	b : 0.10	= : 0.08	g : 0.04	n : 0.04	r : 0.02	i : 0.02	d : 0.02	
m : 0.48	o : 0.27	l : 0.06	n : 0.06	c : 0.04	r : 0.02	b : 0.02	i : 0.02	
m : 0.48	o : 0.27	l : 0.14	n : 0.06	r : 0.02	
m : 0.48	o : 0.27	l : 0.14	n : 0.06	r : 0.02	
m : 0.48	o : 0.27	l : 0.08	c : 0.06	n : 0.06	r : 0.02	
c : 0.53	o : 0.17	b : 0.08	= : 0.06	g : 0.04	r : 0.02	a : 0.02	i : 0.02	d : 0.02	n : 0.02	
c : 0.61	b : 0.12	= : 0.10	g : 0.04	o : 0.04	r : 0.02	i : 0.02	d : 0.02	
c : 0.59	= : 0.14	] : 0.04	g : 0.04	b : 0.04	3 : 0.02	r : 0.02	4 : 0.02	2 : 0.02	i : 0.02	d : 0.02	
2 : 0.19	= : 0.17	c : 0.14	] : 0.14	3 : 0.10	4 : 0.06	g : 0.06	a : 0.04	i : 0.02	b : 0.02	d : 0.02	
2 : 0.19	= : 0.17	3 : 0.14	c : 0.12	g : 0.08	] : 0.08	4 : 0.06	i : 0.04	d : 0.04	b : 0.02	a : 0.02	
= : 0.23	c : 0.17	3 : 0.12	g : 0.08	4 : 0.06	] : 0.06	e : 0.06	b : 0.04	a : 0.04	i : 0.04	d : 0.04	2 : 0.02	
= : 0.27	c : 0.14	g : 0.12	e : 0.12	i : 0.06	b : 0.06	4 : 0.04	3 : 0.04	d : 0.04	] : 0.02	f : 0.02	2 : 0.02	
= : 0.27	e : 0.14	i : 0.08	g : 0.08	c : 0.08	] : 0.08	d : 0.06	3 : 0.04	a : 0.04	f : 0.02	2 : 0.02	4 : 0.02	b : 0.02	
= : 0.29	e : 0.17	i : 0.12	g : 0.08	] : 0.08	c : 0.06	3 : 0.04	: : 0.02	d : 0.02	f : 0.02	2 : 0.02	a : 0.02	4 : 0.02	
= : 0.29	e : 0.17	i : 0.10	g : 0.10	c : 0.08	d : 0.06	3 : 0.04	4 : 0.04	f : 0.02	2 : 0.02	] : 0.02	a : 0.02	
= : 0.27	e : 0.14	i : 0.10	g : 0.10	c : 0.10	4 : 0.06	d : 0.06	] : 0.06	f : 0.04	2 : 0.02	
= : 0.25	] : 0.12	i : 0.10	e : 0.08	g : 0.08	d : 0.06	f : 0.06	c : 0.04	4 : 0.04	3 : 0.04	b : 0.04	a : 0.02	2 : 0.02	
= : 0.21	i : 0.10	g : 0.10	b : 0.10	e : 0.08	] : 0.06	4 : 0.06	f : 0.06	d : 0.06	c : 0.04	3 : 0.04	a : 0.02	2 : 0.02	
= : 0.19	f : 0.10	i : 0.10	b : 0.10	] : 0.08	3 : 0.06	g : 0.06	e : 0.06	4 : 0.06	2 : 0.06	c : 0.04	G : 0.02	d : 0.02	
= : 0.17	c : 0.12	f : 0.10	i : 0.10	e : 0.10	g : 0.08	d : 0.06	4 : 0.06	2 : 0.04	b : 0.04	] : 0.04	3 : 0.02	G : 0.02	
c : 0.12	= : 0.12	f : 0.10	g : 0.10	] : 0.08	i : 0.08	3 : 0.06	e : 0.06	d : 0.06	4 : 0.06	b : 0.04	G : 0.02	: : 0.02	2 : 0.02	
f : 0.10	d : 0.10	b : 0.10	c : 0.10	g : 0.08	e : 0.08	i : 0.06	= : 0.06	] : 0.04	3 : 0.04	2 : 0.04	4 : 0.04	a : 0.02	G : 0.02	E : 0.02	8 : 0.02	0 : 0.02	

#score	728.2735564772274
#seq	47
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_UTR_m2_run2.txt

#BEAR
dd!!bb[cccqqqqqqqqccc]bb22d	chr17:73201707-73201996(+)$1	289	125	152	15.6423
%%%gggggggqqqqqqqqggggggg66	chr2:187373185-187373479(+)$1	294	74	101	13.5714
cc!!ffffffqqqqqqqqffffff]cc	chr1:1192339-1192599(-)$1	260	107	134	15.4003
eeee"""cccqqqqqqqqccceeeee>	chr5:139905727-139906002(+)$1	275	58	85	16.4200
:dddd[ddddqqqqqqqqdddd]dddd	chr19:15514374-15514624(-)$1	250	212	239	14.8179
hhhhh[ddddqqqqqqqqdddd]hhhh	chr7:104731621-104731872(+)$1	251	172	199	14.6635
f[aeeeee[aqqqqqqqqa]eeeee]a	chr5:176965937-176966174(-)$1	237	125	152	15.6643
!dddd!!cccqqqqqqqqccc22dddd	chr9:134330364-134330653(+)$1	289	257	284	16.6259
hhccc!!cccqqqqqqqqccc22ccc]	chr6:31729495-31729750(+)$1	255	61	88	17.0324
ddddccccccrrrrrrrrrccc]ccc]	chr10:126480182-126480515(-)$1	333	301	328	10.0082
cceeeeecccqqqqqqqqccc]eeeee	chr12:132203940-132204192(+)$1	252	224	251	16.2569
bb[ccc[cccqqqqqqqqccc22ccc]	chr8:23428748-23428999(+)$1	251	106	133	16.6001
fff[dddd[aqqqqqqqqa]ddddfff	chr1:22109203-22109513(-)$1	310	230	257	14.9712
dd####ddddqqqqqqqqdddd22ddd	chr12:76449798-76450020(-)$1	222	168	195	16.0228
fff"""ddddqqqqqqqqddddfffff	chr7:148515964-148516245(-)$1	281	185	212	15.6134
[bb!!bb[bbqqqqqqqqbbbb22bb]	chr14:21730635-21730951(-)$1	316	98	125	13.7091
"""gggggggqqqqqqqqggggggg33	chr13:107220126-107220448(-)$1	322	279	306	16.4803
bb[gggggggqqqqqqqqggggggg]b	chrX:154009846-154010129(-)$1	283	113	140	15.5439
ccc!!eeeeeqqqqqqqqeeeeeccc3	chr20:3888607-3888872(+)$1	265	120	147	16.6613
"ccc[a!!bbqqqqqqqqbb22a]ccc	chr9:131830409-131830691(+)$1	282	92	119	15.8964
cccbb[ddddqqqqqqqqdddd]bb::	chr7:100464925-100465179(+)$1	254	40	67	13.6889
ddd[a!!cccqqqqqqqqccc]a]ddd	chr15:91537533-91537796(-)$1	263	180	207	17.0101
:iiiiiiiiiqqqqqqqqiiiiiiiii	chr20:32441243-32441480(+)$1	237	107	134	15.0567
d[bb[eeeeeqqqqqqqqeeeee]bb]	chr7:12443176-12443453(-)$1	277	145	172	15.0112
ddd!!eeeeeqqqqqqqqeeeee]ddd	chr6:28119953-28120232(+)$1	279	195	222	16.0013
ee####ddddqqqqqqqqdddd4444e	chr5:179049945-179050242(-)$1	297	17	44	16.3089
!a####ddddqqqqqqqqdddd333a2	chr3:195792295-195792573(-)$1	278	124	151	16.7876
ddd"""ddddqqqqqqqqddddddddb	chr1:150198838-150199109(-)$1	271	147	174	15.7283
c####eeeeeqqqqqqqqeeeee]ccc	chr6:31727537-31727790(+)$1	253	173	200	16.2724
ccc[ccccccqqqqqqqqccc]ccc]c	chr19:11200059-11200333(+)$1	274	107	134	16.9869
cdddd[acccqqqqqqqqccc333a]d	chr3:14518617-14518949(+)$1	332	269	296	16.8679
!!eeeee[bbqqqqqqqqbb]eeeeeb	chr12:133250059-133250356(-)$1	297	225	252	14.9696
bbffffffbbqqqqqqqqbb]ffffff	chr1:155880387-155880656(-)$1	269	199	226	13.7863
##ccc[ddddqqqqqqqqdddd]ccc4	chr2:38975614-38975888(-)$1	274	98	125	16.5664
ccc[ffffffqqqqqqqqffffffccc	chr21:45745772-45746043(+)$1	271	129	156	15.3630
:dddd!!cccqqqqqqqqccc]ddddd	chr19:49610779-49611064(+)$1	285	26	53	15.5012
eeegggggggqqqqqqqqggggggg33	chr17:73996225-73996583(+)$1	358	146	173	16.1627
cccccc[cccqqqqqqqqcccccc22c	chr19:7707263-7707522(+)$1	259	43	70	16.3852
ggg!!eeeeeqqqqqqqqeeeee4444	chr3:50099028-50099289(+)$1	261	63	90	16.4945
gggggg!!bbqqqqqqqqbb22ggggg	chr22:19863065-19863405(-)$1	340	232	259	15.4419
[a!!ffffffqqqqqqqqffffffa]d	chrX:134166284-134166592(+)$1	308	263	290	15.3911
ffff[eeeeeqqqqqqqqeeeee22ff	chr11:118919349-118919605(-)$1	256	142	169	14.9234
[ccc"""cccqqqqqqqqccc22cccc	chr7:72361080-72361348(+)$1	268	68	95	17.3850
ddccc!!cccqqqqqqqqccc22cccE	chr5:179045018-179045312(-)$1	294	224	251	16.2272
##ffffff[aqqqqqqqqa]ffffff4	chr14:73577438-73577767(+)$1	329	83	110	15.0037
eggggggg[aqqqqqqqqa]ggggggg	chr2:232577071-232577298(+)$1	227	30	57	15.9343
ccc[bb[cccqqqqqqqqccc]bb444	chr16:84215076-84215367(-)$1	291	204	231	16.2873
%eeeeeddddqqqqqqqqdddd]eeee	chr3:142740212-142740496(+)$1	284	160	187	14.9566
hh!!dddd[aqqqqqqqqa]dddd333	chr1:211449500-211449804(+)$1	304	11	38	15.9936
eeee[eeeeeqqqqqqqqeeeee]eee	chr21:46221521-46221817(-)$1	296	244	271	15.5407
!!ccc"""bbqqqqqqqqbbcccbbee	chr7:100285978-100286232(-)$1	254	58	85	15.1744
ddd!!eeeeerrrrrrrrreeeee333	chr5:176737327-176737642(-)$1	315	242	269	10.2300
eeeee!!cccqqqqqqqqccc22eeee	chr9:116170933-116171278(-)$1	345	249	276	16.4394
hhdddd!!bbqqqqqqqqbb22dddd:	chr7:104681172-104681499(+)$1	327	171	198	13.5764

#otherMatches

#Seq PSSM
UCUAGGAGCCUGGGGUUCGGCGCUAUG	chr17:73201707-73201996(+)$1	289	125	152	15.6423
UUAUAUUUAGAAAACAAAUUAAGUGAA	chr2:187373185-187373479(+)$1	294	74	101	13.5714
GGAUUUCCACCCGGACACGUGGAACCC	chr1:1192339-1192599(-)$1	260	107	134	15.4003
GUCUUUAGCCCAACAAAAGGCAGAUAA	chr5:139905727-139906002(+)$1	275	58	85	16.4200
ACACUAGUGCCUCGGGUAGCGCCAGUG	chr19:15514374-15514624(-)$1	250	212	239	14.8179
GACAGCUGCUCUGCAUAUGGUAAUUGU	chr7:104731621-104731872(+)$1	251	172	199	14.6635
UUGCAGGGUGAGAAGCUGCCCCCUGAC	chr5:176965937-176966174(-)$1	237	125	152	15.6643
UUUCCCAGUUUCCAUAGCAACCUGGAA	chr9:134330364-134330653(+)$1	289	257	284	16.6259
GGUGAUUGAUGAUACACUGUCUUUUAU	chr6:31729495-31729750(+)$1	255	61	88	17.0324
CCCGGGGCUCAGGGACAGGGAGACCCU	chr10:126480182-126480515(-)$1	333	301	328	10.0082
GAUUAUAGCUGCUUUUUAGGCAUAUAA	chr12:132203940-132204192(+)$1	252	224	251	16.2569
GCAGCGCUUGCAGAUGUACAACUCGCA	chr8:23428748-23428999(+)$1	251	106	133	16.6001
CGCGCCGGACCUUGGAAAGCCCGGGCG	chr1:22109203-22109513(-)$1	310	230	257	14.9712
UGUUUUUAAGAAUGUUGACUUGCUCAG	chr12:76449798-76450020(-)$1	222	168	195	16.0228
UUUUAAGCAAUUUGGUUUUUGUAGAAU	chr7:148515964-148516245(-)$1	281	185	212	15.6134
AGCAACAUGGAUGCCCAGCCUGGAGCA	chr14:21730635-21730951(-)$1	316	98	125	13.7091
CAAGGAGCGCGUGCGGAAGCGUUCCAA	chr13:107220126-107220448(-)$1	322	279	306	16.4803
GGAGGAGAUGACGAGGAACAUCUCUGC	chrX:154009846-154010129(-)$1	283	113	140	15.5439
GGCAUUCGGGACGUGCACCUCGAGCUG	chr20:3888607-3888872(+)$1	265	120	147	16.6613
UCGUGCUGGACUUCAUCCUCAUGGACG	chr9:131830409-131830691(+)$1	282	92	119	15.8964
UGGUCGUCCCCAAAAUUAGGGAGGAAG	chr7:100464925-100465179(+)$1	254	40	67	13.6889
GAGGGGACGCGGGAGGGAGCGACGCUC	chr15:91537533-91537796(-)$1	263	180	207	17.0101
GGCUGGAUCCAUGUAAUGGGGUCCAGC	chr20:32441243-32441480(+)$1	237	107	134	15.0567
UGAUGUUCCUGGCCUGGGGGGAAGGUA	chr7:12443176-12443453(-)$1	277	145	172	15.0112
CAUGUUCUCCCUGGGUAAGGAGAGGUG	chr6:28119953-28120232(+)$1	279	195	222	16.0013
ccUCGGAGGCGAAGGACAGCUUAAUUG	chr5:179049945-179050242(-)$1	297	17	44	16.3089
UCUGACUGGAAAACAGACUCUACAUGU	chr3:195792295-195792573(-)$1	278	124	151	16.7876
ACUUAAUGAAAGAAGAAAUUCAGGUGA	chr1:150198838-150199109(-)$1	271	147	174	15.7283
UUACUCCCCACAAGUCCUUGGGGUACG	chr6:31727537-31727790(+)$1	253	173	200	16.2724
GCUAGGACACAGCAGGUCGUGAUCCGG	chr19:11200059-11200333(+)$1	274	107	134	16.9869
CUCCAGUGCCCUCCUCAAGGCCAUAGU	chr3:14518617-14518949(+)$1	332	269	296	16.8679
CUGCCGUGUGCACGCAUCCAGAUGGCC	chr12:133250059-133250356(-)$1	297	225	252	14.9696
AGGGAAGAGUGGUAGGUAACAUUUUCC	chr1:155880387-155880656(-)$1	269	199	226	13.7863
GGUCUAGAUCACAUUCUCGAUCCAGAG	chr2:38975614-38975888(-)$1	274	98	125	16.5664
UGCUGUGGUUGUCGGAGAAGCUGCGCG	chr21:45745772-45746043(+)$1	271	129	156	15.3630
UGGAGUCGGCUCAUUUCUGCUCCUCCG	chr19:49610779-49611064(+)$1	285	26	53	15.5012
UGCUUCAGAGCCCGAACCCUCUGGAGC	chr17:73996225-73996583(+)$1	358	146	173	16.1627
CUCCCCAGGUAUGAGACCACCGGGCUG	chr19:7707263-7707522(+)$1	259	43	70	16.3852
GAUGCUCAUUGCAUGAAAAGUGGAAAA	chr3:50099028-50099289(+)$1	261	63	90	16.4945
GCCGGGCACCCCCCCCCAGGCUCCUGG	chr22:19863065-19863405(-)$1	340	232	259	15.4419
GCAGACGGGCUCCUACAUGUUCGUGGA	chrX:134166284-134166592(+)$1	308	263	290	15.3911
GACUUGCCAGAGGAUAAGCUGGCUCAG	chr11:118919349-118919605(-)$1	256	142	169	14.9234
UCAUGUUGCCAUUACAGGGGCCAGUGU	chr7:72361080-72361348(+)$1	268	68	95	17.3850
UUUGAUUGAUUGUACUUUGUCUUUCAG	chr5:179045018-179045312(-)$1	294	224	251	16.2272
UAUUGUUUGGGUUUUAGAUGGAACAAG	chr14:73577438-73577767(+)$1	329	83	110	15.0037
GAGCCACAGUAGGAGGGAAGUGUGGUU	chr2:232577071-232577298(+)$1	227	30	57	15.9343
CGAACUGAACUCCGCCCUGUUGAGCAU	chr16:84215076-84215367(-)$1	291	204	231	16.2873
AUACCUUGGAAACAUUAAUCCACAGGU	chr3:142740212-142740496(+)$1	284	160	187	14.9566
GAUUUUAAUCUAAUUUGUGUUUAACUU	chr1:211449500-211449804(+)$1	304	11	38	15.9936
CCGGGCCCGCGUCGUCCGGCGGGGCUG	chr21:46221521-46221817(-)$1	296	244	271	15.5407
AAGGACUCGAGCUUCCCAUCUCCUCGC	chr7:100285978-100286232(-)$1	254	58	85	15.1744
GGCUUGCCCUGGUGUAUGGAGGGCUGU	chr5:176737327-176737642(-)$1	315	242	269	10.2300
UCUGUGAAGCUUUUCCAUGCUGGGCAG	chr9:116170933-116171278(-)$1	345	249	276	16.4394
UUUGGAUACCAAUGCAUAGGACUCCAU	chr7:104681172-104681499(+)$1	327	171	198	13.5764

#DB
((..((.(((........))).))..)	chr17:73201707-73201996(+)$1	1	125	152	15.6423
...(((((((........)))))))..	chr2:187373185-187373479(+)$1	1	74	101	13.5714
((..((((((........)))))).))	chr1:1192339-1192599(-)$1	1	107	134	15.4003
((((...(((........)))))))).	chr5:139905727-139906002(+)$1	1	58	85	16.4200
.((((.((((........)))).))))	chr19:15514374-15514624(-)$1	1	212	239	14.8179
(((((.((((........)))).))))	chr7:104731621-104731872(+)$1	1	172	199	14.6635
(.((((((.(........).))))).)	chr5:176965937-176966174(-)$1	1	125	152	15.6643
.((((..(((........)))..))))	chr9:134330364-134330653(+)$1	1	257	284	16.6259
(((((..(((........)))..))).	chr6:31729495-31729750(+)$1	1	61	88	17.0324
((((((((((.........))).))).	chr10:126480182-126480515(-)$1	1	301	328	10.0082
))((((((((........))).)))))	chr12:132203940-132204192(+)$1	1	224	251	16.2569
((.(((.(((........)))..))).	chr8:23428748-23428999(+)$1	1	106	133	16.6001
(((.((((.(........).)))))))	chr1:22109203-22109513(-)$1	1	230	257	14.9712
((....((((........))))..)))	chr12:76449798-76450020(-)$1	1	168	195	16.0228
(((...((((........)))))))))	chr7:148515964-148516245(-)$1	1	185	212	15.6134
.((..((.((........))))..)).	chr14:21730635-21730951(-)$1	1	98	125	13.7091
...(((((((........)))))))..	chr13:107220126-107220448(-)$1	1	279	306	16.4803
((.(((((((........))))))).)	chrX:154009846-154010129(-)$1	1	113	140	15.5439
(((..(((((........)))))))).	chr20:3888607-3888872(+)$1	1	120	147	16.6613
.(((.(..((........))..).)))	chr9:131830409-131830691(+)$1	1	92	119	15.8964
)))((.((((........)))).))..	chr7:100464925-100465179(+)$1	1	40	67	13.6889
(((.(..(((........))).).)))	chr15:91537533-91537796(-)$1	1	180	207	17.0101
.(((((((((........)))))))))	chr20:32441243-32441480(+)$1	1	107	134	15.0567
(.((.(((((........))))).)).	chr7:12443176-12443453(-)$1	1	145	172	15.0112
(((..(((((........))))).)))	chr6:28119953-28120232(+)$1	1	195	222	16.0013
((....((((........))))....)	chr5:179049945-179050242(-)$1	1	17	44	16.3089
.(....((((........))))...).	chr3:195792295-195792573(-)$1	1	124	151	16.7876
(((...((((........))))))))(	chr1:150198838-150199109(-)$1	1	147	174	15.7283
(....(((((........))))).)))	chr6:31727537-31727790(+)$1	1	173	200	16.2724
(((.((((((........))).))).)	chr19:11200059-11200333(+)$1	1	107	134	16.9869
(((((.((((........)))...).)	chr3:14518617-14518949(+)$1	1	269	296	16.8679
..(((((.((........)).))))))	chr12:133250059-133250356(-)$1	1	225	252	14.9696
))((((((((........)).))))))	chr1:155880387-155880656(-)$1	1	199	226	13.7863
..(((.((((........)))).))).	chr2:38975614-38975888(-)$1	1	98	125	16.5664
(((.((((((........)))))))))	chr21:45745772-45746043(+)$1	1	129	156	15.3630
.((((..(((........))).))))(	chr19:49610779-49611064(+)$1	1	26	53	15.5012
((((((((((........)))))))..	chr17:73996225-73996583(+)$1	1	146	173	16.1627
((((((.(((........))))))..)	chr19:7707263-7707522(+)$1	1	43	70	16.3852
(((..(((((........)))))....	chr3:50099028-50099289(+)$1	1	63	90	16.4945
((((((..((........))..)))))	chr22:19863065-19863405(-)$1	1	232	259	15.4419
.(..((((((........))))))).)	chrX:134166284-134166592(+)$1	1	263	290	15.3911
((((.(((((........)))))..))	chr11:118919349-118919605(-)$1	1	142	169	14.9234
.(((...(((........)))..))))	chr7:72361080-72361348(+)$1	1	68	95	17.3850
))(((..(((........)))..))))	chr5:179045018-179045312(-)$1	1	224	251	16.2272
..((((((.(........).)))))).	chr14:73577438-73577767(+)$1	1	83	110	15.0037
((((((((.(........).)))))))	chr2:232577071-232577298(+)$1	1	30	57	15.9343
(((.((.(((........))).))...	chr16:84215076-84215367(-)$1	1	204	231	16.2873
.(((((((((........)))).))))	chr3:142740212-142740496(+)$1	1	160	187	14.9566
((..((((.(........).))))...	chr1:211449500-211449804(+)$1	1	11	38	15.9936
((((.(((((........))))).)))	chr21:46221521-46221817(-)$1	1	244	271	15.5407
..(((...((........)))))))))	chr7:100285978-100286232(-)$1	1	58	85	15.1744
(((..(((((.........)))))...	chr5:176737327-176737642(-)$1	1	242	269	10.2300
(((((..(((........)))..))))	chr9:116170933-116171278(-)$1	1	249	276	16.4394
))((((..((........))..)))).	chr7:104681172-104681499(+)$1	1	171	198	13.5764

#PSSM
c : 0.18	d : 0.16	e : 0.11	h : 0.07	f : 0.07	! : 0.07	: : 0.05	b : 0.05	[ : 0.05	% : 0.03	" : 0.03	# : 0.03	g : 0.03	
d : 0.22	c : 0.18	e : 0.11	h : 0.07	b : 0.07	f : 0.05	# : 0.05	g : 0.05	[ : 0.03	a : 0.03	! : 0.03	% : 0.01	" : 0.01	i : 0.01	
c : 0.22	d : 0.18	e : 0.12	f : 0.09	! : 0.07	# : 0.07	g : 0.05	[ : 0.03	b : 0.03	% : 0.01	h : 0.01	a : 0.01	" : 0.01	i : 0.01	
! : 0.16	c : 0.14	e : 0.12	g : 0.11	d : 0.11	[ : 0.09	# : 0.07	f : 0.05	" : 0.03	b : 0.03	h : 0.01	i : 0.01	
c : 0.14	d : 0.12	g : 0.11	f : 0.09	e : 0.09	! : 0.09	" : 0.07	# : 0.07	[ : 0.07	b : 0.05	h : 0.01	a : 0.01	i : 0.01	
e : 0.22	g : 0.11	! : 0.11	f : 0.09	" : 0.09	[ : 0.09	c : 0.07	b : 0.05	d : 0.05	# : 0.05	a : 0.01	i : 0.01	
d : 0.22	e : 0.20	! : 0.16	g : 0.09	f : 0.09	[ : 0.07	" : 0.05	c : 0.03	b : 0.01	i : 0.01	a : 0.01	
c : 0.29	d : 0.22	e : 0.16	g : 0.09	f : 0.09	! : 0.05	[ : 0.03	i : 0.01	" : 0.01	
c : 0.29	d : 0.18	e : 0.14	b : 0.12	[ : 0.09	g : 0.07	f : 0.05	i : 0.01	
c : 0.29	d : 0.18	e : 0.14	b : 0.12	a : 0.09	g : 0.07	f : 0.05	i : 0.01	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
c : 0.27	d : 0.18	b : 0.12	e : 0.12	a : 0.09	g : 0.07	f : 0.05	r : 0.03	i : 0.01	
c : 0.29	d : 0.18	e : 0.14	b : 0.12	] : 0.09	g : 0.07	f : 0.05	i : 0.01	
c : 0.31	d : 0.22	e : 0.16	g : 0.09	f : 0.07	2 : 0.05	] : 0.03	b : 0.01	i : 0.01	
d : 0.22	e : 0.20	2 : 0.16	] : 0.11	g : 0.09	f : 0.09	c : 0.05	b : 0.01	i : 0.01	3 : 0.01	
e : 0.22	2 : 0.14	g : 0.11	f : 0.11	] : 0.11	d : 0.09	c : 0.05	b : 0.03	a : 0.03	3 : 0.03	i : 0.01	4 : 0.01	
c : 0.16	e : 0.12	d : 0.12	g : 0.11	f : 0.11	] : 0.11	b : 0.07	2 : 0.05	4 : 0.03	3 : 0.03	h : 0.01	i : 0.01	
c : 0.20	d : 0.14	e : 0.12	g : 0.11	f : 0.07	b : 0.07	2 : 0.05	4 : 0.05	3 : 0.05	a : 0.03	] : 0.01	h : 0.01	i : 0.01	
c : 0.20	d : 0.14	e : 0.12	] : 0.09	f : 0.09	3 : 0.07	4 : 0.05	2 : 0.03	b : 0.03	g : 0.03	6 : 0.01	h : 0.01	: : 0.01	i : 0.01	a : 0.01	
d : 0.16	c : 0.12	e : 0.11	] : 0.09	3 : 0.09	f : 0.07	4 : 0.07	b : 0.05	: : 0.03	g : 0.03	6 : 0.01	> : 0.01	h : 0.01	a : 0.01	i : 0.01	2 : 0.01	E : 0.01	

#score	837.0586176673289
#seq	54
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_CDS_m2_run1.txt

#BEAR
ccc!!eeeeerrrrrrrrreeeee22c	chr12:122618457-122618765(+)$1	308	157	184	13.0105
!!bb[ddddaqqqqqqqqa]dddd]bb	chr14:104145831-104146108(+)$1	277	192	219	10.3276
=====!!cccpppppppccc22=====	chr1:224619047-224619302(-)$1	255	114	141	13.8007
cccgggggggpppppppggggggg333	chr22:20112891-20113134(+)$1	243	209	236	13.9373
b"""ffffffqqqqqqqqffffff333	chr16:28847368-28847618(+)$1	250	149	176	9.4580
ffff!!ddddpppppppdddd22ffff	chr5:81572033-81572287(-)$1	254	116	143	12.9914
dddd[eeeeepppppppeeeee]dddd	chr18:2700586-2700867(+)$1	281	22	49	12.7202
##ddddddddpppppppdddd]dddd6	chr17:78310107-78310362(+)$1	255	215	242	12.5640
==========ssssssssss=======	chr7:26236000-26236246(-)$1	246	63	90	9.3118
b[hhhhhhhhppppppphhhhhhhh]b	chr5:180664426-180664677(-)$1	251	46	73	10.4791
:ccc[eeeeeqqqqqqqqeeeee333c	chr1:197091328-197091588(-)$1	260	163	190	10.6777
b[ccc[ddddpppppppddddccc]bb	chr5:86690674-86690930(-)$1	256	25	52	14.0233
ebb!!eeeeepppppppeeeee333bb	chr14:50292384-50292650(-)$1	266	154	181	14.2108
ffffff[cccpppppppccc]ffffff	chr1:1019491-1019808(-)$1	317	174	201	11.9710
cc[dddd[bbqqqqqqqqbbdddd]cc	chr12:125270684-125270965(-)$1	281	171	198	8.8401
[bb"""ddddrrrrrrrrrdddd4444	chr16:720283-720560(+)$1	277	243	270	12.9763

#otherMatches

#Seq PSSM
GUGACCACCACCACCACCCUGGUGUGC	chr12:122618457-122618765(+)$1	308	157	184	13.0105
CUGCUAAUACUGAAGUCUGUUAUUUGU	chr14:104145831-104146108(+)$1	277	192	219	10.3276
AAUAAUUGUGGUAAAUACACUUUUGUU	chr1:224619047-224619302(-)$1	255	114	141	13.8007
GCUGUUUGGGGGCCAUGCCCAGACUGA	chr22:20112891-20113134(+)$1	243	209	236	13.9373
GGAAUUUGGCAUGGAAGAGCUGAGGGG	chr16:28847368-28847618(+)$1	250	149	176	9.4580
CCCUCACAUUUUUAUCUGAUGCAAGGG	chr5:81572033-81572287(-)$1	254	116	143	12.9914
UUGAAUGUUUUUGGAAUGGACGAUUAA	chr18:2700586-2700867(+)$1	281	22	49	12.7202
UCAUAAAUGGAAAUUCACCAUCUUGUU	chr17:78310107-78310362(+)$1	255	215	242	12.5640
AGAGGAGGUAAUUUUAAUUCUGUUUCU	chr7:26236000-26236246(-)$1	246	63	90	9.3118
UGGCCUGGUCUGCUGAUGGCCAGGUAA	chr5:180664426-180664677(-)$1	251	46	73	10.4791
CUUCAGAGCUAUACAAAGAGCUCCUAG	chr1:197091328-197091588(-)$1	260	163	190	10.6777
UAUGAAGAUGAUGAUUACGUCUCAAAG	chr5:86690674-86690930(-)$1	256	25	52	14.0233
agcuuguuacaaaaccaguagcucugc	chr14:50292384-50292650(-)$1	266	154	181	14.2108
GGAUCUCGGCCACCCCUGCCCGGGUCC	chr1:1019491-1019808(-)$1	317	174	201	11.9710
CCAGCAGCAGUCCUGCGUCUCUGCCGG	chr12:125270684-125270965(-)$1	281	171	198	8.8401
AGCCCCCCUCUAUGACCCUGAGGCCAA	chr16:720283-720560(+)$1	277	243	270	12.9763

#DB
(((..(((((.........)))))..)	chr12:122618457-122618765(+)$1	1	157	184	13.0105
..((.(((((........).)))).))	chr14:104145831-104146108(+)$1	1	192	219	10.3276
(((((..(((.......)))..)))))	chr1:224619047-224619302(-)$1	1	114	141	13.8007
((((((((((.......)))))))...	chr22:20112891-20113134(+)$1	1	209	236	13.9373
(...((((((........))))))...	chr16:28847368-28847618(+)$1	1	149	176	9.4580
((((..((((.......))))..))))	chr5:81572033-81572287(-)$1	1	116	143	12.9914
((((.(((((.......))))).))))	chr18:2700586-2700867(+)$1	1	22	49	12.7202
..((((((((.......)))).)))).	chr17:78310107-78310362(+)$1	1	215	242	12.5640
((((((((((..........)))))))	chr7:26236000-26236246(-)$1	1	63	90	9.3118
(.((((((((.......)))))))).)	chr5:180664426-180664677(-)$1	1	46	73	10.4791
.(((.(((((........)))))...)	chr1:197091328-197091588(-)$1	1	163	190	10.6777
(.(((.((((.......))))))).))	chr5:86690674-86690930(-)$1	1	25	52	14.0233
(((..(((((.......)))))...))	chr14:50292384-50292650(-)$1	1	154	181	14.2108
((((((.(((.......))).))))))	chr1:1019491-1019808(-)$1	1	174	201	11.9710
((.((((.((........)))))).))	chr12:125270684-125270965(-)$1	1	171	198	8.8401
.((...((((.........))))....	chr16:720283-720560(+)$1	1	243	270	12.9763

#PSSM
c : 0.18	b : 0.18	= : 0.12	f : 0.12	! : 0.06	d : 0.06	# : 0.06	: : 0.06	e : 0.06	[ : 0.06	
c : 0.25	= : 0.12	f : 0.12	[ : 0.12	b : 0.12	! : 0.06	" : 0.06	d : 0.06	# : 0.06	
c : 0.25	b : 0.18	= : 0.12	f : 0.12	d : 0.12	" : 0.06	h : 0.06	[ : 0.06	
d : 0.18	! : 0.12	= : 0.12	" : 0.12	f : 0.12	c : 0.12	b : 0.06	g : 0.06	h : 0.06	
! : 0.18	[ : 0.18	= : 0.12	f : 0.12	d : 0.12	g : 0.06	h : 0.06	c : 0.06	" : 0.06	
e : 0.25	d : 0.18	! : 0.12	f : 0.12	g : 0.06	= : 0.06	h : 0.06	[ : 0.06	" : 0.06	
d : 0.37	e : 0.25	! : 0.06	g : 0.06	f : 0.06	= : 0.06	h : 0.06	[ : 0.06	
d : 0.31	e : 0.25	c : 0.12	g : 0.06	f : 0.06	= : 0.06	h : 0.06	[ : 0.06	
d : 0.31	e : 0.25	c : 0.12	g : 0.06	f : 0.06	= : 0.06	h : 0.06	b : 0.06	
e : 0.25	d : 0.25	c : 0.12	a : 0.06	g : 0.06	f : 0.06	= : 0.06	h : 0.06	b : 0.06	
p : 0.56	q : 0.25	r : 0.12	s : 0.06	
p : 0.56	q : 0.25	r : 0.12	s : 0.06	
p : 0.56	q : 0.25	r : 0.12	s : 0.06	
p : 0.56	q : 0.25	r : 0.12	s : 0.06	
p : 0.56	q : 0.25	r : 0.12	s : 0.06	
p : 0.56	q : 0.25	r : 0.12	s : 0.06	
p : 0.56	q : 0.25	r : 0.12	s : 0.06	
q : 0.25	d : 0.18	r : 0.12	c : 0.12	e : 0.12	g : 0.06	s : 0.06	h : 0.06	
d : 0.18	e : 0.18	r : 0.12	c : 0.12	a : 0.06	g : 0.06	f : 0.06	s : 0.06	h : 0.06	b : 0.06	
e : 0.25	d : 0.25	c : 0.12	] : 0.06	g : 0.06	f : 0.06	s : 0.06	h : 0.06	b : 0.06	
d : 0.37	e : 0.25	2 : 0.06	g : 0.06	f : 0.06	= : 0.06	h : 0.06	] : 0.06	
e : 0.25	d : 0.18	2 : 0.12	f : 0.12	g : 0.06	] : 0.06	= : 0.06	h : 0.06	c : 0.06	
d : 0.25	e : 0.12	= : 0.12	f : 0.12	g : 0.06	2 : 0.06	] : 0.06	h : 0.06	c : 0.06	3 : 0.06	
d : 0.25	f : 0.18	= : 0.12	3 : 0.12	e : 0.06	g : 0.06	h : 0.06	c : 0.06	4 : 0.06	
3 : 0.25	] : 0.18	= : 0.12	f : 0.12	d : 0.12	2 : 0.06	h : 0.06	4 : 0.06	
b : 0.18	3 : 0.18	= : 0.12	f : 0.12	d : 0.12	2 : 0.06	] : 0.06	c : 0.06	4 : 0.06	
b : 0.25	c : 0.18	= : 0.12	3 : 0.12	f : 0.12	d : 0.06	6 : 0.06	4 : 0.06	

#score	191.30072764788127
#seq	16
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_UTR_m2_run1.txt

#BEAR
fffffftttttttttttffff	chr19:8468925-8469210(+)$1	285	20	41	21.4505
e!!bbuuuuuuuuuuuubb22	chr20:307531-307776(+)$1	245	107	128	22.4327
eeeeevvvvvvvvvvvvveee	chr11:2159483-2159690(-)$1	207	101	122	22.9069
+ddddtttttttttttdddd>	chr1:46713574-46713972(+)$1	398	256	277	20.3452
ggggggtttttttttttgggg	chr20:62572639-62572891(-)$1	252	23	44	21.5815
fffffftttttttttttffff	chr17:7311336-7311612(+)$1	276	129	150	21.4505
ddddduuuuuuuuuuuudddd	chr11:2160150-2160352(-)$1	202	148	169	22.3000
ggggggtttttttttttgggg	chr17:36891462-36891815(-)$1	353	25	46	21.5815
$ddddvvvvvvvvvvvvvddd	chr18:29264396-29264722(-)$1	326	36	57	22.2850
ddddvvvvvvvvvvvvvdddd	chr19:45323340-45323577(+)$1	237	181	202	22.2206
!!ddddtttttttttttdddd	chr11:2160220-2160431(-)$1	211	173	194	21.4659
eeeewwwwwwwwwwwwwweee	chr2:69472418-69472736(+)$1	318	155	176	21.7258
eeeeeuuuuuuuuuuuueeee	chr1:1258249-1258524(-)$1	275	150	171	22.7984
"""ccctttttttttttccc2	chr16:29910489-29910722(-)$1	233	33	54	22.0435
[eeeeettttttttttteeee	chr19:46286697-46286936(-)$1	239	194	215	21.7038
fcccvvvvvvvvvvvvvccc3	chr20:308551-308790(+)$1	239	179	200	23.0060
eeeeettttttttttteeeee	chr17:80272918-80273250(-)$1	332	10	31	21.4905
fffffuuuuuuuuuuuuffff	chr16:81744543-81744830(+)$1	287	1	22	22.5765
c[ayyyyyyyyyyyyyyyya]	chr19:45323159-45323412(+)$1	253	136	157	19.3279
ff!!bbtttttttttttbb22	chr16:87734511-87734745(-)$1	234	160	181	21.0022
""bbwwwwwwwwwwwwwwbb4	chr19:48957806-48958088(+)$1	282	91	112	21.0499
$$$bbuuuuuuuuuuuubb66	chr16:87734136-87734358(-)$1	222	87	108	20.8486
gggwwwwwwwwwwwwwwgggg	chr17:42475035-42475330(-)$1	295	15	36	21.2231
d[ccctttttttttttcccdd	chr22:20937029-20937297(+)$1	268	21	42	21.8546
eeeeevvvvvvvvvvvvveee	chr16:67267637-67267939(-)$1	302	276	297	22.9069
[dddduuuuuuuuuuuudddd	chr8:22432193-22432439(+)$1	246	57	78	22.4684
:cccvvvvvvvvvvvvvccc:	chr15:75074747-75074990(+)$1	243	100	121	21.0584
fffffvvvvvvvvvvvvvfff	chr19:14203530-14203805(-)$1	275	245	266	22.6494
dd[bbvvvvvvvvvvvvvbb]	chr9:96021510-96021777(+)$1	267	147	168	22.3273
!!bbvvvvvvvvvvvvvbb22	chr5:175958504-175958729(-)$1	225	54	75	22.1739
d!!bbuuuuuuuuuuuubb22	chr6:30655822-30656120(-)$1	298	144	165	22.3220
ccc[bbtttttttttttbb]c	chr19:45323656-45324017(+)$1	361	36	57	21.1766
ddddduuuuuuuuuuuudddd	chr11:2160102-2160309(-)$1	207	105	126	22.3000
fffffvvvvvvvvvvvvvfff	chr19:50819210-50819463(-)$1	253	219	240	22.6494
fffffvvvvvvvvvvvvvfff	chr19:14203501-14203721(-)$1	220	161	182	22.6494
fffffuuuuuuuuuuuuffff	chr16:28834306-28834591(+)$1	285	49	70	22.5765
b[bbvvvvvvvvvvvvvbb]b	chr1:224621495-224621752(-)$1	257	201	222	21.7189
ddddduuuuuuuuuuuudddd	chr11:2160136-2160342(-)$1	206	138	159	22.3000
ii[bbuuuuuuuuuuuubb]i	chr8:144807168-144807418(-)$1	250	170	191	22.4834
ggggggtttttttttttgggg	chr20:62572716-62572949(-)$1	233	81	102	21.5815
dd[bbvvvvvvvvvvvvvbb]	chr9:96021607-96021939(+)$1	332	50	71	22.3273
cc[bbuuuuuuuuuuuubbcc	chr16:28890423-28890688(+)$1	265	87	108	22.3986
eeeeevvvvvvvvvvvvveee	chr11:2159561-2159772(-)$1	211	183	204	22.9069
%%ccctttttttttttccc22	chr3:9798523-9798870(+)$1	347	159	180	20.5166
f:cccuuuuuuuuuuuuccc:	chr1:160061080-160061360(-)$1	280	84	105	21.2498
ggggguuuuuuuuuuuugggg	chr3:12942671-12942964(-)$1	293	114	135	22.8747
eecccuuuuuuuuuuuuccc]	chr15:65133985-65134250(+)$1	265	123	144	23.3040
[dddduuuuuuuuuuuudddd	chr3:38178050-38178315(-)$1	265	183	204	22.4684
b[cccuuuuuuuuuuuuccc3	chr19:35532831-35533138(+)$1	307	134	155	23.1445
!!ccctttttttttttccc]c	chr2:172016907-172017270(-)$1	363	32	53	22.1041
ggggguuuuuuuuuuuugggg	chr2:204305549-204305783(-)$1	234	90	111	22.8747
fffffftttttttttttffff	chr12:53846030-53846263(+)$1	233	199	220	21.4505
eeeeettttttttttteeeee	chr2:204305420-204305739(-)$1	319	65	86	21.4905
eeeewwwwwwwwwwwwwweee	chr1:155260051-155260316(-)$1	265	221	242	21.7258
e[bbwwwwwwwwwwwwwwbb]	chr2:219134240-219134632(-)$1	392	352	373	21.2259
fffffuuuuuuuuuuuuffff	chr19:45324524-45324754(+)$1	230	140	161	22.5765
""cccuuuuuuuuuuuuccc2	chr20:62695043-62695324(+)$1	281	114	135	23.1675
eeeeeuuuuuuuuuuuueeee	chr1:1258150-1258380(-)$1	230	6	27	22.7984
::cccuuuuuuuuuuuuccc:	chr12:16035268-16035591(+)$1	323	228	249	20.3240
::cccuuuuuuuuuuuuccc:	chr19:35532938-35533229(+)$1	291	27	48	20.3240
ddddduuuuuuuuuuuudddd	chr11:2160160-2160369(-)$1	209	165	186	22.3000
iiiiiuuuuuuuuuuuuiiii	chr1:224621747-224622032(-)$1	285	175	196	22.7767
ddddvvvvvvvvvvvvvdddd	chr19:36110606-36110972(+)$1	366	271	292	22.2206
eeeeettttttttttteeeee	chr11:66011648-66011916(+)$1	268	180	201	21.4905
fffffvvvvvvvvvvvvvfff	chr2:242694776-242695031(+)$1	255	45	66	22.6494
eeeewwwwwwwwwwwwwweee	chr16:28914903-28915222(+)$1	319	208	229	21.7258
iiiiiuuuuuuuuuuuuiiii	chr2:159313868-159314116(+)$1	248	53	74	22.7767
eeeeevvvvvvvvvvvvveee	chr11:2159515-2159738(-)$1	223	149	170	22.9069
=====uuuuuuuuuuuu====	chr11:66011716-66011999(+)$1	283	172	193	23.1037
eeeeevvvvvvvvvvvvveee	chr11:2159460-2159680(-)$1	220	91	112	22.9069
fffffuuuuuuuuuuuuffff	chr4:185309136-185309513(-)$1	377	44	65	22.5765
!!cccuuuuuuuuuuuuccc3	chr14:69255960-69256292(-)$1	332	55	76	23.5019

#otherMatches

#Seq PSSM
ACAGGCCUCCCACCUCUGCCU	chr19:8468925-8469210(+)$1	285	20	41	21.4505
ACGUGCCCAUCCCCCCUCAGA	chr20:307531-307776(+)$1	245	107	128	22.4327
GUCGCACAUUCGGCCCCCGCG	chr11:2159483-2159690(-)$1	207	101	122	22.9069
UGGUCUCUUCCUCUUUGGCCU	chr1:46713574-46713972(+)$1	398	256	277	20.3452
UUCUGCUUCCUCUUAGCGCAG	chr20:62572639-62572891(-)$1	252	23	44	21.5815
cgccccuccucccuccugggg	chr17:7311336-7311612(+)$1	276	129	150	21.4505
CGCCUGUCCCCCUCCCGAGGC	chr11:2160150-2160352(-)$1	202	148	169	22.3000
GUGCCCACCCCCUCCGAGGGC	chr17:36891462-36891815(-)$1	353	25	46	21.5815
ccggcuuucuuccguccugcc	chr18:29264396-29264722(-)$1	326	36	57	22.2850
CUAGCCAUUUcccaacccuag	chr19:45323340-45323577(+)$1	237	181	202	22.2206
CUCGGGCCGCUCCCCUUUCCG	chr11:2160220-2160431(-)$1	211	173	194	21.4659
gggcaccuccucccucccgcc	chr2:69472418-69472736(+)$1	318	155	176	21.7258
UGUUCUGCCCACUCUCUGGAC	chr1:1258249-1258524(-)$1	275	150	171	22.7984
ACAGCCCAGUGGACCCAGGCG	chr16:29910489-29910722(-)$1	233	33	54	22.0435
CAGGGCCCCUCAUCAAAGUCC	chr19:46286697-46286936(-)$1	239	194	215	21.7038
GCCAGUGAGACUGAGAAUGGA	chr20:308551-308790(+)$1	239	179	200	23.0060
ACAGCCGCUGCAACACGCUGU	chr17:80272918-80273250(-)$1	332	10	31	21.4905
AUGCAUGCCCGCCUCUCUGCA	chr16:81744543-81744830(+)$1	287	1	22	22.5765
gccucauccccaacuccaugc	chr19:45323159-45323412(+)$1	253	136	157	19.3279
GUACCGACUGCCUCACCUGAC	chr16:87734511-87734745(-)$1	234	160	181	21.0022
UCGCCCCCAUCCACCCCUGCC	chr19:48957806-48958088(+)$1	282	91	112	21.0499
ucugcccuccucccucugccc	chr16:87734136-87734358(-)$1	222	87	108	20.8486
AUGCCAUCCUACAACAUCAUG	chr17:42475035-42475330(-)$1	295	15	36	21.2231
GUGCCCCUCCCCACCUGGCCC	chr22:20937029-20937297(+)$1	268	21	42	21.8546
GGCCCUGCGCCACCCUCUGGG	chr16:67267637-67267939(-)$1	302	276	297	22.9069
AUGGCAACUUGGAGCCAGCCA	chr8:22432193-22432439(+)$1	246	57	78	22.4684
CCGCCUUUCUUCCCUCCGCGA	chr15:75074747-75074990(+)$1	243	100	121	21.0584
GGGCUCACGCUUAACUCCAGC	chr19:14203530-14203805(-)$1	275	245	266	22.6494
CACUGCCUCCACAACCCACAC	chr9:96021510-96021777(+)$1	267	147	168	22.3273
UCAGCUUCCUUUUCAUACUUU	chr5:175958504-175958729(-)$1	225	54	75	22.1739
CCUAGUCUCUGCACCUCCUUA	chr6:30655822-30656120(-)$1	298	144	165	22.3220
auccGUAACCAUCCCAGACCG	chr19:45323656-45324017(+)$1	361	36	57	21.1766
CGCCUGUCCCCCUCCCGAGGC	chr11:2160102-2160309(-)$1	207	105	126	22.3000
GGCUUCAAAUCUCCCCCCAAG	chr19:50819210-50819463(-)$1	253	219	240	22.6494
GGGCUCACGCUUAACUCCAGC	chr19:14203501-14203721(-)$1	220	161	182	22.6494
CUCGCUUUCCUCCAGCCGCGA	chr16:28834306-28834591(+)$1	285	49	70	22.5765
ccgcauccucagccaccgucg	chr1:224621495-224621752(-)$1	257	201	222	21.7189
CGCCUGUCCCCCUCCCGAGGC	chr11:2160136-2160342(-)$1	206	138	159	22.3000
UGGAGGCCCGUCUCUUGCUGU	chr8:144807168-144807418(-)$1	250	170	191	22.4834
UUCUGCUUCCUCUUAGCGCAG	chr20:62572716-62572949(-)$1	233	81	102	21.5815
CACUGCCUCCACAACCCACAC	chr9:96021607-96021939(+)$1	332	50	71	22.3273
GCCUCUUUAGAUUCUUUGAGC	chr16:28890423-28890688(+)$1	265	87	108	22.3986
GUCGCACAUUCGGCCCCCGCG	chr11:2159561-2159772(-)$1	211	183	204	22.9069
UAGUCUCACCAGCCCUGACCC	chr3:9798523-9798870(+)$1	347	159	180	20.5166
ACGUGCCUCCCCUUCCCCACU	chr1:160061080-160061360(-)$1	280	84	105	21.2498
CCACCCCCCCACCCACCGGUG	chr3:12942671-12942964(-)$1	293	114	135	22.8747
GGGACAGAACGCGGAGAGUCG	chr15:65133985-65134250(+)$1	265	123	144	23.3040
UCUCAAGGACGUGAAUCUGAG	chr3:38178050-38178315(-)$1	265	183	204	22.4684
caguccuuuccuccccagacc	chr19:35532831-35533138(+)$1	307	134	155	23.1445
cuggcacccccucgacgccuc	chr2:172016907-172017270(-)$1	363	32	53	22.1041
CAGUGCCCCGCCUCCUCCACU	chr2:204305549-204305783(-)$1	234	90	111	22.8747
GGCUCGGGUCCUAGUCACGAG	chr12:53846030-53846263(+)$1	233	199	220	21.4505
CUGAAGAUCCAUCAAGUUCAG	chr2:204305420-204305739(-)$1	319	65	86	21.4905
CUGCAUCCAAUCUGCUCAGCA	chr1:155260051-155260316(-)$1	265	221	242	21.7258
UUCUAACCCUCUCCCCAAAGC	chr2:219134240-219134632(-)$1	392	352	373	21.2259
UCACAUCAACACCAUCCUGUG	chr19:45324524-45324754(+)$1	230	140	161	22.5765
UUGCCUUCCUCCAUCCCGGCC	chr20:62695043-62695324(+)$1	281	114	135	23.1675
UGUUCUGCCCACUCUCUGGAC	chr1:1258150-1258380(-)$1	230	6	27	22.7984
CCGGAUUGCCCUUCUUUUCCU	chr12:16035268-16035591(+)$1	323	228	249	20.3240
caguccuuuccuccccagacc	chr19:35532938-35533229(+)$1	291	27	48	20.3240
CGCCUGUCCCCCUCCCGAGGC	chr11:2160160-2160369(-)$1	209	165	186	22.3000
CUGCUGUCCCCCACCGAAGUA	chr1:224621747-224622032(-)$1	285	175	196	22.7767
AGUCCCCACCCAACCCAGACU	chr19:36110606-36110972(+)$1	366	271	292	22.2206
GCAGGCUCCUUCCCUCCCUGU	chr11:66011648-66011916(+)$1	268	180	201	21.4905
GGCCCAUUCUCAUCCUCAGGG	chr2:242694776-242695031(+)$1	255	45	66	22.6494
GCGCCCCCUCAGCCCCUUGCG	chr16:28914903-28915222(+)$1	319	208	229	21.7258
UGCUGCUCCCCUCCCCCCGGC	chr2:159313868-159314116(+)$1	248	53	74	22.7767
GUCGCACAUUCGGCCCCCGCG	chr11:2159515-2159738(-)$1	223	149	170	22.9069
CCUGACCGUCCGUGUUCUCAG	chr11:66011716-66011999(+)$1	283	172	193	23.1037
GUCGCACAUUCGGCCCCCGCG	chr11:2159460-2159680(-)$1	220	91	112	22.9069
UGUGAUCUUGCUCUAUCUCAC	chr4:185309136-185309513(-)$1	377	44	65	22.5765
AGGGACCUCCUGCCUACUCCA	chr14:69255960-69256292(-)$1	332	55	76	23.5019

#DB
((((((...........))))	chr19:8468925-8469210(+)$1	1	20	41	21.4505
(..((............))..	chr20:307531-307776(+)$1	1	107	128	22.4327
(((((.............)))	chr11:2159483-2159690(-)$1	1	101	122	22.9069
.((((...........)))).	chr1:46713574-46713972(+)$1	1	256	277	20.3452
((((((...........))))	chr20:62572639-62572891(-)$1	1	23	44	21.5815
((((((...........))))	chr17:7311336-7311612(+)$1	1	129	150	21.4505
)((((............))))	chr11:2160150-2160352(-)$1	1	148	169	22.3000
((((((...........))))	chr17:36891462-36891815(-)$1	1	25	46	21.5815
.((((.............)))	chr18:29264396-29264722(-)$1	1	36	57	22.2850
((((.............))))	chr19:45323340-45323577(+)$1	1	181	202	22.2206
..((((...........))))	chr11:2160220-2160431(-)$1	1	173	194	21.4659
((((..............)))	chr2:69472418-69472736(+)$1	1	155	176	21.7258
(((((............))))	chr1:1258249-1258524(-)$1	1	150	171	22.7984
...(((...........))).	chr16:29910489-29910722(-)$1	1	33	54	22.0435
.(((((...........))))	chr19:46286697-46286936(-)$1	1	194	215	21.7038
((((.............))).	chr20:308551-308790(+)$1	1	179	200	23.0060
(((((...........)))))	chr17:80272918-80273250(-)$1	1	10	31	21.4905
(((((............))))	chr16:81744543-81744830(+)$1	1	1	22	22.5765
(.(................).	chr19:45323159-45323412(+)$1	1	136	157	19.3279
((..((...........))..	chr16:87734511-87734745(-)$1	1	160	181	21.0022
..((..............)).	chr19:48957806-48958088(+)$1	1	91	112	21.0499
...((............))..	chr16:87734136-87734358(-)$1	1	87	108	20.8486
(((..............))))	chr17:42475035-42475330(-)$1	1	15	36	21.2231
(.(((...........)))))	chr22:20937029-20937297(+)$1	1	21	42	21.8546
(((((.............)))	chr16:67267637-67267939(-)$1	1	276	297	22.9069
.((((............))))	chr8:22432193-22432439(+)$1	1	57	78	22.4684
.(((.............))).	chr15:75074747-75074990(+)$1	1	100	121	21.0584
(((((.............)))	chr19:14203530-14203805(-)$1	1	245	266	22.6494
((.((.............)).	chr9:96021510-96021777(+)$1	1	147	168	22.3273
..((.............))..	chr5:175958504-175958729(-)$1	1	54	75	22.1739
(..((............))..	chr6:30655822-30656120(-)$1	1	144	165	22.3220
(((.((...........)).)	chr19:45323656-45324017(+)$1	1	36	57	21.1766
)((((............))))	chr11:2160102-2160309(-)$1	1	105	126	22.3000
(((((.............)))	chr19:50819210-50819463(-)$1	1	219	240	22.6494
(((((.............)))	chr19:14203501-14203721(-)$1	1	161	182	22.6494
(((((............))))	chr16:28834306-28834591(+)$1	1	49	70	22.5765
(.((.............)).)	chr1:224621495-224621752(-)$1	1	201	222	21.7189
)((((............))))	chr11:2160136-2160342(-)$1	1	138	159	22.3000
((.((............)).)	chr8:144807168-144807418(-)$1	1	170	191	22.4834
((((((...........))))	chr20:62572716-62572949(-)$1	1	81	102	21.5815
((.((.............)).	chr9:96021607-96021939(+)$1	1	50	71	22.3273
((.((............))))	chr16:28890423-28890688(+)$1	1	87	108	22.3986
(((((.............)))	chr11:2159561-2159772(-)$1	1	183	204	22.9069
..(((...........)))..	chr3:9798523-9798870(+)$1	1	159	180	20.5166
).(((............))).	chr1:160061080-160061360(-)$1	1	84	105	21.2498
(((((............))))	chr3:12942671-12942964(-)$1	1	114	135	22.8747
(((((............))).	chr15:65133985-65134250(+)$1	1	123	144	23.3040
.((((............))))	chr3:38178050-38178315(-)$1	1	183	204	22.4684
(.(((............))).	chr19:35532831-35533138(+)$1	1	134	155	23.1445
..(((...........))).)	chr2:172016907-172017270(-)$1	1	32	53	22.1041
(((((............))))	chr2:204305549-204305783(-)$1	1	90	111	22.8747
((((((...........))))	chr12:53846030-53846263(+)$1	1	199	220	21.4505
(((((...........)))))	chr2:204305420-204305739(-)$1	1	65	86	21.4905
((((..............)))	chr1:155260051-155260316(-)$1	1	221	242	21.7258
(.((..............)).	chr2:219134240-219134632(-)$1	1	352	373	21.2259
(((((............))))	chr19:45324524-45324754(+)$1	1	140	161	22.5765
..(((............))).	chr20:62695043-62695324(+)$1	1	114	135	23.1675
(((((............))))	chr1:1258150-1258380(-)$1	1	6	27	22.7984
..(((............))).	chr12:16035268-16035591(+)$1	1	228	249	20.3240
..(((............))).	chr19:35532938-35533229(+)$1	1	27	48	20.3240
)((((............))))	chr11:2160160-2160369(-)$1	1	165	186	22.3000
(((((............))))	chr1:224621747-224622032(-)$1	1	175	196	22.7767
((((.............))))	chr19:36110606-36110972(+)$1	1	271	292	22.2206
(((((...........)))))	chr11:66011648-66011916(+)$1	1	180	201	21.4905
(((((.............)))	chr2:242694776-242695031(+)$1	1	45	66	22.6494
((((..............)))	chr16:28914903-28915222(+)$1	1	208	229	21.7258
(((((............))))	chr2:159313868-159314116(+)$1	1	53	74	22.7767
(((((.............)))	chr11:2159515-2159738(-)$1	1	149	170	22.9069
(((((............))))	chr11:66011716-66011999(+)$1	1	172	193	23.1037
(((((.............)))	chr11:2159460-2159680(-)$1	1	91	112	22.9069
(((((............))))	chr4:185309136-185309513(-)$1	1	44	65	22.5765
..(((............))).	chr14:69255960-69256292(-)$1	1	55	76	23.5019

#PSSM
e : 0.22	f : 0.19	d : 0.13	g : 0.08	! : 0.05	" : 0.04	[ : 0.04	c : 0.04	: : 0.04	i : 0.04	$ : 0.02	b : 0.02	+ : 0.01	% : 0.01	= : 0.01	
e : 0.20	f : 0.16	d : 0.16	! : 0.08	g : 0.08	[ : 0.06	c : 0.05	" : 0.04	i : 0.04	: : 0.04	$ : 0.01	% : 0.01	= : 0.01	
e : 0.19	c : 0.18	f : 0.15	d : 0.15	g : 0.08	b : 0.05	[ : 0.05	! : 0.04	i : 0.02	" : 0.01	a : 0.01	$ : 0.01	= : 0.01	
e : 0.19	c : 0.18	f : 0.15	b : 0.15	d : 0.15	g : 0.06	i : 0.02	y : 0.01	! : 0.01	w : 0.01	[ : 0.01	= : 0.01	
f : 0.15	e : 0.15	c : 0.15	b : 0.12	d : 0.12	v : 0.08	w : 0.08	g : 0.06	i : 0.02	y : 0.01	= : 0.01	
u : 0.40	v : 0.25	t : 0.09	w : 0.08	f : 0.04	g : 0.04	b : 0.02	d : 0.01	c : 0.01	e : 0.01	y : 0.01	
u : 0.40	t : 0.25	v : 0.25	w : 0.08	y : 0.01	
u : 0.40	t : 0.25	v : 0.25	w : 0.08	y : 0.01	
u : 0.40	t : 0.25	v : 0.25	w : 0.08	y : 0.01	
u : 0.40	t : 0.25	v : 0.25	w : 0.08	y : 0.01	
u : 0.40	t : 0.25	v : 0.25	w : 0.08	y : 0.01	
u : 0.40	t : 0.25	v : 0.25	w : 0.08	y : 0.01	
u : 0.40	t : 0.25	v : 0.25	w : 0.08	y : 0.01	
u : 0.40	t : 0.25	v : 0.25	w : 0.08	y : 0.01	
u : 0.40	t : 0.25	v : 0.25	w : 0.08	y : 0.01	
u : 0.40	t : 0.25	v : 0.25	w : 0.08	y : 0.01	
u : 0.40	v : 0.25	t : 0.15	w : 0.08	e : 0.04	c : 0.04	d : 0.01	y : 0.01	
c : 0.18	v : 0.16	d : 0.13	b : 0.12	f : 0.09	g : 0.08	e : 0.08	w : 0.06	i : 0.02	y : 0.01	= : 0.01	
e : 0.19	b : 0.18	c : 0.18	f : 0.15	d : 0.15	g : 0.08	i : 0.02	y : 0.01	= : 0.01	
e : 0.19	d : 0.16	f : 0.15	c : 0.15	g : 0.08	2 : 0.06	b : 0.05	] : 0.05	i : 0.02	a : 0.01	6 : 0.01	= : 0.01	
e : 0.19	f : 0.15	d : 0.15	2 : 0.09	g : 0.08	] : 0.06	: : 0.05	3 : 0.04	c : 0.04	i : 0.04	> : 0.01	4 : 0.01	6 : 0.01	b : 0.01	= : 0.01	

#score	1588.204572673593
#seq	72
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_UTR_m1_run2.txt

#BEAR
d[ffffff!!cccnnnnnccc]ffffff]	chr5:179247844-179248136(+)$1	292	18	47	12.3857
a[ffffff[cccccclllccc]ccc]fff	chr6:34204898-34205137(+)$1	239	167	196	9.9747
iiccc!!bb[ddddllldddd]bbccc]i	chr8:145066868-145067114(+)$1	246	182	211	9.7866
ffffff[ddddoooooodddd]ffffff3	chr3:184041987-184042246(+)$1	259	200	229	9.6500
ccc[a[ccccccooooooccc]ccc]a]c	chr8:146016605-146016855(-)$1	250	218	247	12.5344
a!!abb[ddddoooooodddd]bb]a22a	chr22:50018420-50018705(-)$1	285	154	183	9.6347
c[ffffff[cccooooooccc]ffffffc	chrX:153609620-153609852(+)$1	232	168	197	11.3001
fff[dddd[cccooooooccc]dddd]ff	chr17:40443916-40444141(+)$1	225	186	215	10.6127
fff"""a!!ddddnnnnndddd22a333f	chrX:153590587-153590799(-)$1	212	137	166	12.9247
d==========[annnnna]=========	chr15:91425131-91425395(+)$1	264	116	145	13.5319
dd:==========nnnnn==========e	chr16:88874664-88874911(+)$1	247	192	221	12.2563
[a[==========oooooo==========	chr19:50308609-50308842(+)$1	233	155	184	12.5752
======!!ccc[ccclllccc]ccc333=	chr11:62334772-62335023(-)$1	251	106	135	11.9397
ddd"""bb!!cccnnnnnccc]bb333dd	chr19:50302824-50303122(+)$1	298	125	154	12.5025
dddd[ccc[ddddnnnnndddd]ccc]dd	chr19:10886278-10886549(+)$1	271	140	169	12.0000
dd[bbgggggggooooooggggggg]bb]	chr19:13056622-13056878(+)$1	256	38	67	9.8873
cggggggg[ddddnnnnnddddggggggg	chr16:2012638-2012866(-)$1	228	17	46	12.4982
###ccc[cccddddllldddd22ccc]cc	chr1:32827595-32827846(-)$1	251	49	78	10.3975
bb[a"""ddddoooooodddd22a]bb33	chr17:75316211-75316471(+)$1	260	136	165	9.7856
e$$$$$cccddddnnnnndddd]ccc333	chr22:24236879-24237114(+)$1	235	42	71	12.1973
:eeeee[bb[cccnnnnnccc]bb]eeee	chr12:120634600-120634837(-)$1	237	132	161	10.5528
dd[bb####ddddnnnnndddd22bb]dd	chr10:70742849-70743080(+)$1	231	132	161	11.4431
"""ccc!!eeeeennnnneeeee333ccc	chr19:18644031-18644253(-)$1	222	153	182	11.6706
=========ddddnnnnndddddddd[bb	chr3:127340942-127341209(+)$1	267	31	60	11.6312
eee!!ddddddddnnnnndddd]dddd44	chrX:153581430-153581664(-)$1	234	170	199	11.0403
eeeee[ccc!!bboooooobb22ccc22e	chr22:20940756-20941008(+)$1	252	215	244	9.7676
ccc!!eeeee[bbnnnnnbb]eeeee444	chr19:1577387-1577623(-)$1	236	137	166	10.0722
[bb[iiiiiiiiinnnnniiiiiiiiibb	chr1:43166583-43166793(+)$1	210	152	181	11.7940
dddd####ddddoooooodddddddd]cc	chr6:30692043-30692282(+)$1	239	30	59	10.5943
accc[a[ccccccnnnnnccc]cccaccc	chr10:81965046-81965362(-)$1	316	236	265	13.6035
ccc!!ccc[ddddnnnnndddd]ccc]cc	chr19:8386819-8387076(+)$1	257	225	254	13.0179
a[ccc[gggggggnnnnnggggggg]ccc	chr2:127453771-127454047(+)$1	276	69	98	12.1551
$$ccc[ccccccooooooccc]ccc]ccc	chr2:242168568-242168811(-)$1	243	79	108	12.0725
!!a[ffffff!!annnnna22ffffff]a	chr17:26888342-26888694(-)$1	352	182	211	10.5946
ee[ccc####ccclllccc4444ccc]ee	chr19:41306654-41306905(+)$1	251	40	69	10.3761
eee!!bb!!cccooooooccc22bb333e	chr3:53260738-53260994(-)$1	256	14	43	11.7612
ffdddd[dddd[aooooooa]dddd333d	chr19:49995037-49995262(+)$1	225	74	103	9.8024
bb[ccc!!ccccccmmmmccc]ccc22cc	chr22:21351605-21351859(+)$1	254	153	182	9.6606
ccccc[ccc[cccnnnnnccc]cccccc:	chr19:19162468-19162757(+)$1	289	169	198	12.5740
!eeeee####bb[aooooooa]bb4444e	chr2:96949579-96949832(-)$1	253	44	73	9.6080
eee!!ffffff[annnnna]ffffff22e	chr12:53427489-53427721(+)$1	232	54	83	10.4061
[iiiiiiiii[bbnnnnnbb]iiiiiiii	chrX:153590834-153591046(-)$1	212	48	77	11.8733
eggggggg"""aooooooa333ggggggg	chr6:31802688-31802947(+)$1	259	139	168	11.4151
ggggggg[a[cccnnnnnccc]a]ggggg	chr17:49245563-49245804(+)$1	241	95	124	13.2467
[dddd"""cccbbnnnnnbb]ccc]dddd	chr16:2222232-2222475(+)$1	243	19	48	10.6085
eeeee####cccooooooccc22eeeee7	chr12:53856229-53856452(+)$1	223	75	104	10.7311
============oooooo===========	chr17:75494732-75495034(+)$1	302	189	218	12.7669
eeeee$$$$$cccnnnnnccc22eeeee]	chr19:13265316-13265558(+)$1	242	207	236	11.3896
======[ccccccnnnnnccc]ccc====	chr16:16208750-16209033(+)$1	283	163	192	14.3978
cc[ffffffddddnnnnndddd22fffff	chr12:125396151-125396416(-)$1	265	49	78	11.1754
cc==========oooooo==========]	chr1:1717540-1717746(-)$1	206	168	197	12.6425
ffffff!!eeeeennnnneeeee333fff	chr10:5951033-5951354(+)$1	321	205	234	10.7679
HHH==========nnnnn==========:	chr2:127453987-127454248(+)$1	261	138	167	10.5916
fffff$$$$$cccnnnnnccc]ffffff2	chr3:45267434-45267661(-)$1	227	67	96	11.7306
ccc[bb[cccddddllldddd333ccc]b	chr11:62327180-62327381(-)$1	201	83	112	9.9844
"""ccc!!a[cccmmmmccca]cccccc]	chr22:22277088-22277335(-)$1	247	179	208	10.1722
bb[ccc"""ddddoooooodddd]cccbb	chr16:2012048-2012254(-)$1	206	74	103	10.6787
[a[ccc[bbddddnnnnndddd]bb]ccc	chr12:49521965-49522212(-)$1	247	128	157	12.1287

#otherMatches

#Seq PSSM
CUCCGCGUUCGCUACAAAAGCCGCGCGGC	chr5:179247844-179248136(+)$1	292	18	47	12.3857
CGCACCGCAGGCCGGCGGCCGAGCUCGCG	chr6:34204898-34205137(+)$1	239	167	196	9.9747
GCCUGGACCCUGCCCCUGGCACGGCAGUG	chr8:145066868-145067114(+)$1	246	182	211	9.7866
CCAGAUGCUACUCAGCUGUAGAAUUUGGA	chr3:184041987-184042246(+)$1	259	200	229	9.6500
GCUGAGGGCUGUGGGUGAACAUGCuguga	chr8:146016605-146016855(-)$1	250	218	247	12.5344
GGGGAGGUGCUGAGGAGGGCAGCUACGAC	chr22:50018420-50018705(-)$1	285	154	183	9.6347
CUCCUUUUGUCAUCUUGUUGGGGGGAGGG	chrX:153609620-153609852(+)$1	232	168	197	11.3001
AGGAGUGUUGAGAAGUCCCUCCAUAUGCC	chr17:40443916-40444141(+)$1	225	186	215	10.6127
CUCUCAUGACGCCAGUAAGGUGAAGGCCG	chrX:153590587-153590799(-)$1	212	137	166	12.9247
CGGGCCCACCUGGCCACCUGAGGUGGGCC	chr15:91425131-91425395(+)$1	264	116	145	13.5319
GGCGGUGGGCCCCUUCAUGGGGCUCACCU	chr16:88874664-88874911(+)$1	247	192	221	12.2563
GCAGCAGGUGCUCAAUAUCGAGUGCCUGC	chr19:50308609-50308842(+)$1	233	155	184	12.5752
UGUCUUGGGCGAAGUGAAACUGUGUGAGA	chr11:62334772-62335023(-)$1	251	106	135	11.9397
GCAAUGCCAAGCAGAUCGUGUCGGAGAUG	chr19:50302824-50303122(+)$1	298	125	154	12.5025
GGUGCCUGUGGGCGACCAGCCUCCAGACA	chr19:10886278-10886549(+)$1	271	140	169	12.0000
UGGUcggcgcgcggcgcggcgcgccUGGG	chr19:13056622-13056878(+)$1	256	38	67	9.8873
AGGUGGCCACCGCCAUCCGUGGGGCCAUC	chr16:2012638-2012866(-)$1	228	17	46	12.4982
AUUCUGGCCCGCGCUGAGUGCCAGGGGCG	chr1:32827595-32827846(-)$1	251	49	78	10.3975
GGGGAGGCCGCCUCUGAGCGGGACGCCGG	chr17:75316211-75316471(+)$1	260	136	165	9.7856
GUCGCUGGGGCGGGCUGACCGCGCCCUUU	chr22:24236879-24237114(+)$1	235	42	71	12.1973
UGUGgcugcugccccuguggcugcugcca	chr12:120634600-120634837(-)$1	237	132	161	10.5528
GGAAGUUAAGGUUUCCUCAGCCACCUGCC	chr10:70742849-70743080(+)$1	231	132	161	11.4431
AAGCUGGAACCUUCCAACAAGGUGAGCAG	chr19:18644031-18644253(-)$1	222	153	182	11.6706
UCUUGGCGUGAGUUGCGUAUUCAGGCUGC	chr3:127340942-127341209(+)$1	267	31	60	11.6312
CCAUCCCGGUGGUGAUCAGCCAGUCGGAA	chrX:153581430-153581664(-)$1	234	170	199	11.0403
CCUGCCUCUCAGCCGCCUAGCCAAGACUG	chr22:20940756-20941008(+)$1	252	215	244	9.7676
GGGACUUGGUCGCCCGGCGCUGCCAGAAU	chr19:1577387-1577623(-)$1	236	137	166	10.0722
CCAUCCAUUUAUGGCAGUCGUGAGUGGUG	chr1:43166583-43166793(+)$1	210	152	181	11.7940
AGAGCAACAUGAACGACCUCGUCUCUGAG	chr6:30692043-30692282(+)$1	239	30	59	10.5943
CCCUCGCGUCCGGAGUCCCCGUGGCCAGG	chr10:81965046-81965362(-)$1	316	236	265	13.6035
GUGAGAGGGUUUGGGAGGCAGAGUCUACA	chr19:8386819-8387076(+)$1	257	225	254	13.0179
GAUAGCCACCUGGAAACACUAGGUGCCUG	chr2:127453771-127454047(+)$1	276	69	98	12.1551
UCAGCACUCUGGCCUUCAUCACGAGAGCU	chr2:242168568-242168811(-)$1	243	79	108	12.0725
GCUGCUCUGGCUGACCACCUUCCAGAGGA	chr17:26888342-26888694(-)$1	352	182	211	10.5946
CCAGCCCUCUUCGGGACGGUUUUGGCGGG	chr19:41306654-41306905(+)$1	251	40	69	10.3761
CCUCAGGAUGUCCCACCAGGCCCCCACCA	chr3:53260738-53260994(-)$1	256	14	43	11.7612
CUUCCUCCAUUGUUGCCCUGGAAUGUACG	chr19:49995037-49995262(+)$1	225	74	103	9.8024
GUGCCCAGAGCCUCCAAAGAGAGCUGAGG	chr22:21351605-21351859(+)$1	254	153	182	9.6606
UCGGUGCUGACUGAUGGACAGCCAGACCU	chr19:19162468-19162757(+)$1	289	169	198	12.5740
UGGGAGCCUUGGCCUGCAGUGACCCUCCC	chr2:96949579-96949832(-)$1	253	44	73	9.6080
CUUCUGGUGAUUGGAAAACUAUUACUUAA	chr12:53427489-53427721(+)$1	232	54	83	10.4061
UGGCUGGGGUGUCCCUGCGAGGUCUCAGC	chrX:153590834-153591046(-)$1	212	48	77	11.8733
GGCUGGGGUAGGAGAGGGCGGUCCCCAGU	chr6:31802688-31802947(+)$1	259	139	168	11.4151
CCCUGGGCUGGUGAAGUACAUGAACUCAG	chr17:49245563-49245804(+)$1	241	95	124	13.2467
AGCAGAUCGGGGAGCUCUUCAUCCACUGC	chr16:2222232-2222475(+)$1	243	19	48	10.6085
ACCGGCCCAAGCCGUCCAGCUCUCCGGUC	chr12:53856229-53856452(+)$1	223	75	104	10.7311
GCGGCCUCCCCGAGGUUGUGGGGAGGCUG	chr17:75494732-75495034(+)$1	302	189	218	12.7669
UCAGUGGAAAGGCAUAAGGCUGAGCUGAG	chr19:13265316-13265558(+)$1	242	207	236	11.3896
UCAUCUACUUCUUCGUCCAGGUAAGGGGU	chr16:16208750-16209033(+)$1	283	163	192	14.3978
UUGAUCUUUGCUGGGAAACAGCUGGAAGA	chr12:125396151-125396416(-)$1	265	49	78	11.1754
UUAUUUGUGUAUGAAACAAUGUACAAAUC	chr1:1717540-1717746(-)$1	206	168	197	12.6425
CCUCUACGCUGCUGCCGGGGUAGGUCUGG	chr10:5951033-5951354(+)$1	321	205	234	10.7679
GCAUCAAAUGUCAGUCCUUGACAUUUGGG	chr2:127453987-127454248(+)$1	261	138	167	10.5916
ugagcucgccggcccgucgcccgcucgcc	chr3:45267434-45267661(-)$1	227	67	96	11.7306
UUGGCAGGUGGACUACGAGUCAUACACAU	chr11:62327180-62327381(-)$1	201	83	112	9.9844
AAACCAAAGACACUGGUGUGCAUGGGGCA	chr22:22277088-22277335(-)$1	247	179	208	10.1722
GGAGUUCACUGACCACCUCGUCAAGACCC	chr16:2012048-2012254(-)$1	206	74	103	10.6787
AGCGCAGCAUCCAGUUUGUGGAUUGGUGC	chr12:49521965-49522212(-)$1	247	128	157	12.1287

#DB
(.((((((..(((.....))).)))))).	chr5:179247844-179248136(+)$1	1	18	47	12.3857
(.((((((.((((((...))).))).)))	chr6:34204898-34205137(+)$1	1	167	196	9.9747
(((((..((.((((...)))).))))).)	chr8:145066868-145067114(+)$1	1	182	211	9.7866
((((((.((((......)))).)))))).	chr3:184041987-184042246(+)$1	1	200	229	9.6500
(((.(.((((((......))).))).).)	chr8:146016605-146016855(-)$1	1	218	247	12.5344
(..(((.((((......)))).)).)..)	chr22:50018420-50018705(-)$1	1	154	183	9.6347
(.((((((.(((......))).)))))))	chrX:153609620-153609852(+)$1	1	168	197	11.3001
(((.((((.(((......))).)))).))	chr17:40443916-40444141(+)$1	1	186	215	10.6127
(((...(..((((.....))))..)...)	chrX:153590587-153590799(-)$1	1	137	166	12.9247
)((((((((((.(.....).)))))))))	chr15:91425131-91425395(+)$1	1	116	145	13.5319
)).((((((((((.....))))))))))(	chr16:88874664-88874911(+)$1	1	192	221	12.2563
.(.((((((((((......))))))))))	chr19:50308609-50308842(+)$1	1	155	184	12.5752
((((((..(((.(((...))).)))...)	chr11:62334772-62335023(-)$1	1	106	135	11.9397
(((...((..(((.....))).))...))	chr19:50302824-50303122(+)$1	1	125	154	12.5025
((((.(((.((((.....)))).))).))	chr19:10886278-10886549(+)$1	1	140	169	12.0000
((.(((((((((......))))))).)).	chr19:13056622-13056878(+)$1	1	38	67	9.8873
((((((((.((((.....)))))))))))	chr16:2012638-2012866(-)$1	1	17	46	12.4982
...(((.(((((((...))))..))).))	chr1:32827595-32827846(-)$1	1	49	78	10.3975
((.(...((((......))))..).))..	chr17:75316211-75316471(+)$1	1	136	165	9.7856
(.....(((((((.....)))).)))...	chr22:24236879-24237114(+)$1	1	42	71	12.1973
.(((((.((.(((.....))).)).))))	chr12:120634600-120634837(-)$1	1	132	161	10.5528
((.((....((((.....))))..)).))	chr10:70742849-70743080(+)$1	1	132	161	11.4431
...(((..(((((.....)))))...)))	chr19:18644031-18644253(-)$1	1	153	182	11.6706
)))))))))((((.....))))((((.((	chr3:127340942-127341209(+)$1	1	31	60	11.6312
(((..((((((((.....)))).))))..	chrX:153581430-153581664(-)$1	1	170	199	11.0403
(((((.(((..((......))..)))..)	chr22:20940756-20941008(+)$1	1	215	244	9.7676
(((..(((((.((.....)).)))))...	chr19:1577387-1577623(-)$1	1	137	166	10.0722
.((.(((((((((.....)))))))))))	chr1:43166583-43166793(+)$1	1	152	181	11.7940
((((....((((......)))))))).))	chr6:30692043-30692282(+)$1	1	30	59	10.5943
((((.(.((((((.....))).)))))))	chr10:81965046-81965362(-)$1	1	236	265	13.6035
(((..(((.((((.....)))).))).))	chr19:8386819-8387076(+)$1	1	225	254	13.0179
(.(((.(((((((.....))))))).)))	chr2:127453771-127454047(+)$1	1	69	98	12.1551
..(((.((((((......))).))).)))	chr2:242168568-242168811(-)$1	1	79	108	12.0725
..(.((((((..(.....)..)))))).)	chr17:26888342-26888694(-)$1	1	182	211	10.5946
((.(((....(((...)))....))).))	chr19:41306654-41306905(+)$1	1	40	69	10.3761
(((..((..(((......)))..))...)	chr3:53260738-53260994(-)$1	1	14	43	11.7612
((((((.((((.(......).))))...)	chr19:49995037-49995262(+)$1	1	74	103	9.8024
((.(((..((((((....))).)))..))	chr22:21351605-21351859(+)$1	1	153	182	9.6606
))(((.(((.(((.....))).)))))).	chr19:19162468-19162757(+)$1	1	169	198	12.5740
.(((((....((.(......).))....)	chr2:96949579-96949832(-)$1	1	44	73	9.6080
(((..((((((.(.....).))))))..)	chr12:53427489-53427721(+)$1	1	54	83	10.4061
.(((((((((.((.....)).))))))))	chrX:153590834-153591046(-)$1	1	48	77	11.8733
)(((((((...(......)...)))))))	chr6:31802688-31802947(+)$1	1	139	168	11.4151
(((((((.(.(((.....))).).)))))	chr17:49245563-49245804(+)$1	1	95	124	13.2467
.((((...(((((.....)).))).))))	chr16:2222232-2222475(+)$1	1	19	48	10.6085
(((((....(((......)))..))))).	chr12:53856229-53856452(+)$1	1	75	104	10.7311
((((((((((((......)))))))))))	chr17:75494732-75495034(+)$1	1	189	218	12.7669
(((((.....(((.....)))..))))).	chr19:13265316-13265558(+)$1	1	207	236	11.3896
((((((.((((((.....))).)))))))	chr16:16208750-16209033(+)$1	1	163	192	14.3978
((.((((((((((.....))))..)))))	chr12:125396151-125396416(-)$1	1	49	78	11.1754
((((((((((((......)))))))))).	chr1:1717540-1717746(-)$1	1	168	197	12.6425
((((((..(((((.....)))))...)))	chr10:5951033-5951354(+)$1	1	205	234	10.7679
(((((((((((((.....)))))))))).	chr2:127453987-127454248(+)$1	1	138	167	10.5916
(((((.....(((.....))).)))))).	chr3:45267434-45267661(-)$1	1	67	96	11.7306
(((.((.(((((((...))))...))).)	chr11:62327180-62327381(-)$1	1	83	112	9.9844
...(((..(.(((....)))).)))))).	chr22:22277088-22277335(-)$1	1	179	208	10.1722
((.(((...((((......)))).)))))	chr16:2012048-2012254(-)$1	1	74	103	10.6787
.(.(((.((((((.....)))).)).)))	chr12:49521965-49522212(-)$1	1	128	157	12.1287

#PSSM
c : 0.15	e : 0.15	d : 0.13	f : 0.10	[ : 0.08	a : 0.06	= : 0.06	b : 0.05	" : 0.03	! : 0.03	i : 0.01	# : 0.01	: : 0.01	$ : 0.01	g : 0.01	H : 0.01	
e : 0.15	c : 0.13	d : 0.12	f : 0.10	= : 0.08	[ : 0.06	b : 0.06	g : 0.05	i : 0.03	! : 0.03	a : 0.03	$ : 0.03	" : 0.03	# : 0.01	H : 0.01	
c : 0.15	[ : 0.15	f : 0.13	e : 0.13	= : 0.10	d : 0.08	g : 0.05	" : 0.03	! : 0.01	: : 0.01	# : 0.01	$ : 0.01	b : 0.01	a : 0.01	i : 0.01	H : 0.01	
c : 0.20	= : 0.15	f : 0.12	[ : 0.08	e : 0.08	! : 0.08	d : 0.06	g : 0.05	a : 0.03	" : 0.03	b : 0.03	$ : 0.01	i : 0.01	
c : 0.18	= : 0.15	f : 0.13	e : 0.08	! : 0.08	b : 0.06	d : 0.05	" : 0.05	g : 0.05	[ : 0.03	i : 0.03	a : 0.01	$ : 0.01	# : 0.01	
= : 0.15	c : 0.15	f : 0.13	[ : 0.08	" : 0.06	g : 0.06	b : 0.05	d : 0.05	$ : 0.05	e : 0.05	# : 0.05	i : 0.03	! : 0.01	a : 0.01	
[ : 0.15	c : 0.12	= : 0.12	f : 0.10	! : 0.10	g : 0.08	# : 0.08	" : 0.05	d : 0.03	b : 0.03	i : 0.03	$ : 0.03	a : 0.01	e : 0.01	
c : 0.18	! : 0.12	= : 0.12	f : 0.10	d : 0.10	# : 0.08	b : 0.06	g : 0.06	i : 0.03	" : 0.03	$ : 0.03	e : 0.01	[ : 0.01	
c : 0.20	= : 0.12	[ : 0.10	d : 0.10	! : 0.06	# : 0.06	b : 0.05	e : 0.05	f : 0.05	g : 0.03	i : 0.03	" : 0.03	a : 0.03	$ : 0.03	
d : 0.27	c : 0.24	= : 0.10	[ : 0.08	! : 0.05	e : 0.05	g : 0.03	i : 0.03	f : 0.03	# : 0.03	$ : 0.03	" : 0.01	
c : 0.36	d : 0.32	= : 0.10	g : 0.03	e : 0.03	! : 0.03	[ : 0.03	i : 0.01	b : 0.01	f : 0.01	" : 0.01	
c : 0.32	d : 0.25	= : 0.08	b : 0.08	[ : 0.06	o : 0.05	g : 0.03	e : 0.03	i : 0.01	! : 0.01	a : 0.01	
c : 0.24	d : 0.24	o : 0.24	a : 0.06	b : 0.06	= : 0.05	e : 0.03	i : 0.01	g : 0.01	[ : 0.01	
n : 0.53	o : 0.31	c : 0.05	d : 0.05	l : 0.01	a : 0.01	m : 0.01	
n : 0.53	o : 0.32	l : 0.06	c : 0.03	m : 0.03	
n : 0.53	o : 0.32	l : 0.10	m : 0.03	
n : 0.53	o : 0.32	l : 0.08	m : 0.03	c : 0.01	
n : 0.53	o : 0.27	d : 0.10	l : 0.03	c : 0.03	m : 0.01	
c : 0.34	d : 0.29	o : 0.08	a : 0.06	= : 0.06	b : 0.05	g : 0.03	e : 0.03	i : 0.01	
c : 0.32	d : 0.31	= : 0.08	b : 0.06	] : 0.03	g : 0.03	e : 0.03	i : 0.01	2 : 0.01	4 : 0.01	a : 0.01	o : 0.01	3 : 0.01	
c : 0.31	d : 0.31	= : 0.10	] : 0.06	g : 0.03	e : 0.03	a : 0.03	b : 0.01	i : 0.01	2 : 0.01	4 : 0.01	f : 0.01	3 : 0.01	
] : 0.34	d : 0.22	= : 0.10	2 : 0.10	e : 0.05	g : 0.03	i : 0.03	f : 0.03	3 : 0.03	4 : 0.01	c : 0.01	
c : 0.17	2 : 0.15	f : 0.10	= : 0.10	b : 0.08	d : 0.08	] : 0.08	g : 0.06	e : 0.05	i : 0.03	4 : 0.01	a : 0.01	3 : 0.01	
c : 0.27	b : 0.12	f : 0.10	= : 0.10	d : 0.08	g : 0.06	2 : 0.05	3 : 0.05	e : 0.05	i : 0.03	] : 0.03	a : 0.01	
c : 0.31	f : 0.12	= : 0.10	d : 0.08	g : 0.08	] : 0.06	3 : 0.05	b : 0.05	e : 0.05	i : 0.03	a : 0.01	4 : 0.01	
c : 0.18	f : 0.12	3 : 0.12	= : 0.12	] : 0.10	d : 0.08	e : 0.06	g : 0.05	a : 0.03	b : 0.03	i : 0.03	2 : 0.01	4 : 0.01	
c : 0.17	f : 0.13	] : 0.12	= : 0.12	3 : 0.10	2 : 0.06	g : 0.05	e : 0.05	b : 0.03	d : 0.03	4 : 0.03	i : 0.03	a : 0.01	[ : 0.01	
c : 0.18	f : 0.13	= : 0.12	3 : 0.10	] : 0.06	d : 0.06	b : 0.06	e : 0.06	2 : 0.05	g : 0.05	4 : 0.05	i : 0.01	
c : 0.18	e : 0.12	] : 0.08	f : 0.08	= : 0.08	d : 0.08	b : 0.06	3 : 0.05	g : 0.05	i : 0.03	a : 0.03	4 : 0.03	: : 0.03	7 : 0.01	2 : 0.01	

#score	658.8771221496505
#seq	58
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_CDS_m1_run2.txt

#BEAR
geeeee''''''''eeeee!!ddddmmmmdddd22eeeee	chrX:132887536-132887814(-)$1	278	55	95	33.5501
ee[eeeee####eeeee[a[ddddooooooddddaeeeee	chr2:21249585-21249829(-)$1	244	64	104	30.3602

#otherMatches

#Seq PSSM
ACUGCUCUUACUGCCAGGGACUGAUGAUGGUUAAACCCUG	chrX:132887536-132887814(-)$1	278	55	95	33.5501
CAGUGUCAACAAAGCUUUGUACUGGGUUAAUGGUCAAGUU	chr2:21249585-21249829(-)$1	244	64	104	30.3602

#DB
((((((........(((((..((((....))))..)))))	chrX:132887536-132887814(-)$1	1	55	95	33.5501
((.(((((....(((((.(.((((......))))))))))	chr2:21249585-21249829(-)$1	1	64	104	30.3602

#PSSM
g : 0.50	e : 0.50	
e : 1.00	
e : 0.50	[ : 0.50	
e : 1.00	
e : 1.00	
e : 1.00	
' : 0.50	e : 0.50	
' : 0.50	e : 0.50	
' : 0.50	# : 0.50	
' : 0.50	# : 0.50	
' : 0.50	# : 0.50	
' : 0.50	# : 0.50	
' : 0.50	e : 0.50	
' : 0.50	e : 0.50	
e : 1.00	
e : 1.00	
e : 1.00	
e : 0.50	[ : 0.50	
e : 0.50	a : 0.50	
! : 0.50	[ : 0.50	
! : 0.50	d : 0.50	
d : 1.00	
d : 1.00	
d : 1.00	
d : 0.50	o : 0.50	
m : 0.50	o : 0.50	
m : 0.50	o : 0.50	
m : 0.50	o : 0.50	
m : 0.50	o : 0.50	
d : 0.50	o : 0.50	
d : 1.00	
d : 1.00	
d : 1.00	
2 : 0.50	d : 0.50	
2 : 0.50	a : 0.50	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	

#score	63.91041873934998
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_UTR_m1_run2.txt

#BEAR
gggggbb####cccddddoooooodddd22ccc]bb]gg	chr17:79879931-79880143(-)$1	212	94	133	15.6158
ee!!bb[bbccc[a[abbnnnnnbb]a]a]ccc4444bb	chr3:195635358-195635621(-)$1	263	73	112	12.8095
fccceeeee####ddddoooooodddd22eeeeeeeeee	chr11:554442-554707(+)$1	265	149	188	13.8734
ccc!!ddddccc!!ddddoooooodddd22ccc]dddd]	chr22:32021687-32021976(-)$1	289	162	201	14.8495
!dddd####ccc[ddddcccmmmmccc22dddd333ccc	chr19:1473815-1474058(-)$1	243	119	158	12.0840
dd!!bbccc####eeeeeooooooeeeee333ccc333b	chr5:139039046-139039335(+)$1	289	53	92	14.7129
!dddd[bbccc!!ddddoooooodddd22ccc22bb]dd	chr19:1959159-1959418(+)$1	259	144	183	14.8629
ddd"""ddddbb"""ddddmmmmdddd4444bb]ddddd	chr12:123463985-123464284(+)$1	299	204	243	13.3171
eee"""ccc$$$$$ccclllccc]ccc4444eeeee]ee	chr19:1878998-1879238(-)$1	240	11	50	11.0664
h[ddddccc[a[bb[cccnnnnnccc]bb]accc]dddd	chr4:56411996-56412246(-)$1	250	41	80	11.7729
fffff"""ccc"""cccannnnna]ccc]ccc]ffffff	chr19:2426212-2426432(-)$1	220	122	161	13.9771
""ccc==========[bbnnnnnbb]==========]cc	chr12:109124489-109124814(-)$1	325	109	148	13.6436
b[dddd!!ccc"""ddddlllddddccc22ddddbb]bb	chr22:19704745-19705029(+)$1	284	106	145	13.0530
:ffffff"""ccc[ddddnnnnndddd]ccc333fffff	chr19:4455155-4455435(-)$1	280	213	252	14.1361
iiiiiiiii!!a!!ddddnnnnndddd22a]iiiiiiii	chr19:1104367-1104633(+)$1	266	187	226	17.8473
eeeffffff"""a!!ddddmmmmdddd22a22ffffff:	chr5:179248492-179248805(+)$1	313	117	156	13.0724
####ffffff!!eeeeeooooooeeeee22ffffff333	chr11:3013168-3013466(-)$1	298	24	63	12.4305
c===========!!eeeeellleeeee4444========	chr16:28875579-28875844(+)$1	265	136	175	14.8904
ccc[eeeee!!a!!ddddoooooodddd22a22eeeee]	chr9:80645409-80645703(-)$1	294	156	195	14.8980
ddd####==========aooooooa]==========22d	chr19:7978309-7978576(+)$1	267	98	137	13.8410
ee[eeeeebb[bb[ddddnnnnnddddbb]bb333eeee	chr19:575000-575240(+)$1	240	114	153	13.1154
dd!!cccbbccc[eeeeennnnneeeee22ccc22bb]c	chr9:101867329-101867617(+)$1	288	121	160	13.3360
ffff[a[ccc"""eeeeennnnneeeee4444ccc]aff	chr11:2407199-2407452(+)$1	253	198	237	14.7960
ccc[a[dddd[a[aooooooa]adddd]a]ccc]bb]aa	chr14:105259584-105259830(-)$1	246	108	147	11.6607
C:bb[a[ccc####ddddnnnnndddd4444ccc]abb:	chr14:104164250-104164500(+)$1	250	149	188	13.6730
a[eeeee[a[bba!!ddddmmmmdddd22a]bbaeeeee	chr7:127671501-127671759(+)$1	258	165	204	13.1065
!!ccc!!dddd!!ccc[annnnna]ccc22dddd22ccc	chr19:40737884-40738136(-)$1	252	23	62	13.2992
ddddbb[bb$$$$$ddddnnnnndddd4444bb]bb]dd	chr8:101963093-101963400(-)$1	307	154	193	16.0671
bb[bb####a[a[eeeeennnnneeeee]a]a22bb]bb	chr18:3451699-3451979(+)$1	280	202	241	13.4268
i[ffffff$$$$$dddd[annnnna]ddddffffff]ii	chr19:18554140-18554408(-)$1	268	116	155	11.9411
iiiiiiii!!a[bb[ddddmmmmdddd]bba22iiiiii	chr19:1472927-1473199(-)$1	272	212	251	13.5374
hh!!bb####dddd!!cccnnnnnccc4444dddd333b	chr19:18536754-18537007(+)$1	253	168	207	12.8512
eeeccc[ccc"""bb[aooooooa]bb22ccc]ccc]ee	chr2:191513905-191514192(+)$1	287	130	169	13.5000
iiiiiiiibbccc[ddddnnnnndddd]ccc]bb333ii	chr10:102759098-102759366(+)$1	268	3	42	15.2312
=====[iiiiiiiii[bbnnnnnbb22iiiiiiiii333	chr1:26232475-26232781(-)$1	306	44	83	12.4796
eeeffffff"""bba[cccooooooccc]a]bb]fffff	chr11:46382999-46383254(+)$1	255	175	214	11.9487
iiiiiiibb"""bb[cccnnnnnccc]bb333bb]iiii	chr17:75415723-75416002(+)$1	279	174	213	14.0039
eeee:============aooooooa]============:	chr9:140445562-140445832(+)$1	270	135	174	12.4707
iiiiiiigggggggddddnnnnndddd4444gggggggB	chr11:506114-506397(-)$1	283	43	82	15.2220
ee[ccc[ddddbb!!ddddmmmmdddd]bb]ddddccc]	chr20:31172308-31172546(-)$1	238	87	126	11.9564
dddccc[ccc[a[ddddoooooodddd]acccccc22dd	chr11:868512-868810(-)$1	298	214	253	14.7726
ffff"""dddd"""ddddmmmmdddd333dddd22ffff	chr2:48011218-48011481(+)$1	263	83	122	12.9396
iiiiiii"""ccc!!ddddmmmmdddd22ccc22iiiii	chr20:32254576-32254803(-)$1	227	179	218	15.1821
ffffff[bb[bb"""ddddmmmmdddd333bb]bb]fff	chr1:228328771-228329043(+)$1	272	207	246	13.3740
ggggg"""bb!!ffffffnnnnnffffff22bb4444gg	chr11:843611-843894(+)$1	283	31	70	11.8976
========[bb!!eeeeeooooooeeeee22bb======	chr19:18547563-18547871(-)$1	308	248	287	14.2461
dddd!!ccc[bbbb!!ddddmmmmdddd333bb]bbccc	chr9:139730333-139730579(+)$1	246	93	132	11.7655
!!ccc!!a[ccc[dddd!!aooooooa22dddd]ccc]a	chr7:77166711-77166985(+)$1	274	99	138	12.8726
!!dddd[a!!bb[ddddoooooodddd]bb22a]dddd2	chr19:55855875-55856129(+)$1	254	59	98	13.6675
e[dddd####ccc[ddddmmmmddddccc4444dddd22	chr1:32827742-32828012(-)$1	270	57	96	12.3822
a[iiiiiiiii!!eeeeennnnneeeee22iiiiiiiii	chr8:26240670-26241000(+)$1	330	276	315	15.1059
iiiiiiii!!a[bb[ddddmmmmdddd]bba22iiiiii	chr19:1472858-1473083(-)$1	225	96	135	13.5374
eee[bb[adddd[addddmmmmdddd]a]dddd22a]bb	chr3:33481597-33481848(-)$1	251	188	227	11.6424
ddddbb[bb$$$$$ddddnnnnndddd4444bb]bb]dd	chr8:101962998-101963293(-)$1	295	47	86	16.0671
""ccc!!ccc####a[ccclllccc]a333ccc22ccc4	chr4:2936000-2936301(-)$1	301	51	90	14.5906
bb[ffffff[a[a[ddddoooooodddd]aaffffff33	chr1:1189357-1189635(-)$1	278	32	71	13.9708
eeeee####dddda[ddddmmmmdddd22a]dddd4444	chr19:1104622-1104879(+)$1	257	195	234	13.2205

#otherMatches

#Seq PSSM
CUUUAGCCCCAGGGGAGCAGCUCAGCUUAGCCCAGCAUG	chr17:79879931-79880143(-)$1	212	94	133	15.6158
CACGGUACCUCCGGGGCUGAAGGGGACGCAGGAUGUAGG	chr3:195635358-195635621(-)$1	263	73	112	12.8095
UCUCCUGCUAGAAUUGGGCAUGGCCGAGGGGCAGGGGCU	chr11:554442-554707(+)$1	265	149	188	13.8734
CCUGCGCCGGCCCAUGAUGUGUCAGUCAGAGGCGCGGCA	chr22:32021687-32021976(-)$1	289	162	201	14.8495
UGCCACACACAGCCUGGGAGGCGCCUCAUCCAGAAACUG	chr19:1473815-1474058(-)$1	243	119	158	12.0840
CUGGGACUGCCAAGAGGGGCUGGGCCCUCAUCCAGAUUU	chr5:139039046-139039335(+)$1	289	53	92	14.7129
UGAGUGUCCCCACUCCCUUGUCUGGGAAAGGGCUGGAGC	chr19:1959159-1959418(+)$1	259	144	183	14.8629
GCCCACAGUACCACAGUGUGCCCACACCACCGGUUACUG	chr12:123463985-123464284(+)$1	299	204	243	13.3171
CUGCCCAGCCCACUGGUCUGACCUGCUCCCACAGGGACC	chr19:1878998-1879238(-)$1	240	11	50	11.0664
gUGCCGCAGUCCGCAGUCCGAACGGCCGCCGUUGCCGGC	chr4:56411996-56412246(-)$1	250	41	80	11.7729
GCACCAGGCAGGUGGUCCUCGCUGUGACACUGAGGUGCU	chr19:2426212-2426432(-)$1	220	122	161	13.9771
GGCUCACGUGGGGCCGGGGCGAGCUGGGCCCUGCGUCGG	chr12:109124489-109124814(-)$1	325	109	148	13.6436
GUGGGUGGCCCACAGAGCGGAGCUCGGGAGACCCCCGCA	chr22:19704745-19705029(+)$1	284	106	145	13.0530
AGCCCGUAAGUUCAUGGGAGGGGCCUGAGAGGAGACGGG	chr19:4455155-4455435(-)$1	280	213	252	14.1361
GGGGGCGCGGAGGGCUGGAAAUCCCGGAUCAcgcgcccc	chr19:1104367-1104633(+)$1	266	187	226	17.8473
GACGCGGGUAAACAAGCGCGGGGGUGCGGGGGACUCGCG	chr5:179248492-179248805(+)$1	313	117	156	13.0724
GAgggcggccgggcccggacgggcggguggggccgcggg	chr11:3013168-3013466(-)$1	298	24	63	12.4305
UGUGUGAGCCGAGGUGGCCGCUGGCUGGAGAUUGGUUUG	chr16:28875579-28875844(+)$1	265	136	175	14.8904
UGGGGGAUGGCCUGCGGUGGAGUGGCCGGUGUGCAUCCA	chr9:80645409-80645703(-)$1	294	156	195	14.8980
ggcugagggugggggugcgagguggUCACUCCCAUCGUG	chr19:7978309-7978576(+)$1	267	98	137	13.8410
AGAGCUGCCUGCAGCCUGGGAAGCAGGUGGAGUCUGCAG	chr19:575000-575240(+)$1	240	114	153	13.1154
cgggccgggccgggcCACAGGCGGUGGCGGCGGGACCAU	chr9:101867329-101867617(+)$1	288	121	160	13.3360
cuucaugugcuuuuuugcuguguguggaucuugcgggga	chr11:2407199-2407452(+)$1	253	198	237	14.7960
AGGGCUCUGGACUCCCGUUUGCGCCAGUGGCCUGCAUCC	chr14:105259584-105259830(-)$1	246	108	147	11.6607
CACGUGCCAGCCCUGCGCUGCCUGCGCUCCUCUGACCGG	chr14:104164250-104164500(+)$1	250	149	188	13.6730
GAGGACCAGCGGCGUGGCGGCUGCGCUCGGACCCGGUcc	chr7:127671501-127671759(+)$1	258	165	204	13.1065
AGGGUGAGGGCAGCUGGGGUGUGUGCAGGAGCUCAGGCU	chr19:40737884-40738136(-)$1	252	23	62	13.2992
CGGGGUAGAGAACAGGGUGGUGAGCCCGCAGUCGGCUCC	chr8:101963093-101963400(-)$1	307	154	193	16.0671
CUGACAGGUCUAGAGACACGCGCUGUCUGUUGUGGUGGG	chr18:3451699-3451979(+)$1	280	202	241	13.4268
CUGUGACUCAGGGCCCAGGGAUCACAUGGGGGUCACUGC	chr19:18554140-18554408(-)$1	268	116	155	11.9411
AGCUCGGGAGGACCAUGCCGGUGGGCACGGCGCCCCGAG	chr19:1472927-1473199(-)$1	272	212	251	13.5374
GGGGCCGGGGCAGGAACAGGAGGACUGGAAAUCUGAAAG	chr19:18536754-18537007(+)$1	253	168	207	12.8512
CUGAGCAGUCCUCGGGGAGAGCGCGCCAAGACCGCUGCA	chr2:191513905-191514192(+)$1	287	130	169	13.5000
UCCUACUCGGGCUAGGGCGCGGGGUCCCGGCACCGGAGA	chr10:102759098-102759366(+)$1	268	3	42	15.2312
GGGGUCGCUCCGCUUUGUGUGUGGCUCGGGCGGAGCCUC	chr1:26232475-26232781(-)$1	306	44	83	12.4796
CAGAGGCCGCCAGCCCGGAGCUGGAUCCAGAGCCCGGCC	chr11:46382999-46383254(+)$1	255	175	214	11.9487
AGCCUCCGACUCACCCACUGCCCGUGUGUAUUUCAGGAG	chr17:75415723-75416002(+)$1	279	174	213	14.0039
CAGGAGGGCUCAGUGCGCAAGCCGGACGUGCUGGGUCCA	chr9:140445562-140445832(+)$1	270	135	174	12.4707
GCCUUGGGGGAAACCAGAGGACUUCUGCACCGUUUCCCG	chr11:506114-506397(-)$1	283	43	82	15.2220
CUGGGUGCGCUCCAAGGGCUUCCGCCUGGGCAGCGGCCG	chr20:31172308-31172546(-)$1	238	87	126	11.9564
GGAGGCCUGCGAGCUGCCACAGUGCAGGUGCAGCCGUUC	chr11:868512-868810(-)$1	298	214	253	14.7726
AUGGGGACCGCGGGGCCUAAUUGGGCGGGGCGGGGCCGU	chr2:48011218-48011481(+)$1	263	83	122	12.9396
CCCGGCCCCUAGUUCAGGCUUCAGUCUCCGCUCUGGCUG	chr20:32254576-32254803(-)$1	227	179	218	15.1821
UUCCUCAGGAGGUAAAGGAAUGUUCCUGUCCCCCCCGGG	chr1:228328771-228329043(+)$1	272	207	246	13.3740
CCUUCUUGCUGUGCCCCUGGGGUGGGGGUGAGGAAAUGG	chr11:843611-843894(+)$1	283	31	70	11.8976
GCUGCAGGAGCAACUGUGGCCGCACAUGGAGGCCCUGCG	chr19:18547563-18547871(-)$1	308	248	287	14.2461
GGGCACGGGUGGAGGAGGACUCAGGUUUGCACUGCCCCC	chr9:139730333-139730579(+)$1	246	93	132	11.7655
gggcgggcgggcggcgggggggccAGCGACCGCAGCCGG	chr7:77166711-77166985(+)$1	274	99	138	12.8726
GAGCUGGGAGCUGUGCCAAUUUGGGCAGGGAGUGUGGCA	chr19:55855875-55856129(+)$1	254	59	98	13.6675
GGGCGCUCCGCCGCGUCUGUGUGGACCGGGAAUGCGCGG	chr1:32827742-32828012(-)$1	270	57	96	12.3822
GGUCUUGGGCCCGGGGCCGUUUGGGCUCGCGGUCCGGGA	chr8:26240670-26241000(+)$1	330	276	315	15.1059
AGCUCGGGAGGACCAUGCCGGUGGGCACGGCGCCCCGAG	chr19:1472858-1473083(-)$1	225	96	135	13.5374
CCGggcggggcggucggcggcggcugcagcgcuagcggc	chr3:33481597-33481848(-)$1	251	188	227	11.6424
CGGGGUAGAGAACAGGGUGGUGAGCCCGCAGUCGGCUCC	chr8:101962998-101963293(-)$1	295	47	86	16.0671
gacgggaccggggacgcgcaggguggggggcgggaccgg	chr4:2936000-2936301(-)$1	301	51	90	14.5906
CCAGAGCCAGCAGGGGCUGUUUCGGGCCGCGUGGCUCCC	chr1:1189357-1189635(-)$1	278	32	71	13.9708
CGGCGGAAGGCCCCAGCGUGCAGGCGCAGGAGGGCGCGG	chr19:1104622-1104879(+)$1	257	195	234	13.2205

#DB
(((((((....(((((((......))))..))).)).))	chr17:79879931-79880143(-)$1	1	94	133	15.6158
((..((.(((((.(.(((.....)).).).)))....))	chr3:195635358-195635621(-)$1	1	73	112	12.8095
))))(((((....((((......))))..)))))(((((	chr11:554442-554707(+)$1	1	149	188	13.8734
(((..(((((((..((((......))))..))).)))).	chr22:32021687-32021976(-)$1	1	162	201	14.8495
.((((....(((.(((((((....)))..))))...)))	chr19:1473815-1474058(-)$1	1	119	158	12.0840
((..(((((....(((((......)))))...)))...)	chr5:139039046-139039335(+)$1	1	53	92	14.7129
.((((.(((((..((((......))))..)))..)).))	chr19:1959159-1959418(+)$1	1	144	183	14.8629
(((...((((((...((((....))))....)).)))))	chr12:123463985-123464284(+)$1	1	204	243	13.3171
(((...(((.....(((...))).)))....))))).))	chr19:1878998-1879238(-)$1	1	11	50	11.0664
(.(((((((.(.((.(((.....))).)).)))).))))	chr4:56411996-56412246(-)$1	1	41	80	11.7729
(((((...(((...((((.....).))).))).))))))	chr19:2426212-2426432(-)$1	1	122	161	13.9771
..(((((((((((((.((.....)).)))))))))).))	chr12:109124489-109124814(-)$1	1	109	148	13.6436
(.((((..(((...((((...)))))))..)))))).))	chr22:19704745-19705029(+)$1	1	106	145	13.0530
.((((((...(((.((((.....)))).)))...)))))	chr19:4455155-4455435(-)$1	1	213	252	14.1361
(((((((((..(..((((.....))))..).))))))))	chr19:1104367-1104633(+)$1	1	187	226	17.8473
)))((((((...(..((((....))))..)..)))))).	chr5:179248492-179248805(+)$1	1	117	156	13.0724
....((((((..(((((......)))))..))))))...	chr11:3013168-3013466(-)$1	1	24	63	12.4305
)(((((((((((..(((((...)))))....))))))))	chr16:28875579-28875844(+)$1	1	136	175	14.8904
(((.(((((..(..((((......))))..)..))))).	chr9:80645409-80645703(-)$1	1	156	195	14.8980
(((....(((((((((((......).))))))))))..)	chr19:7978309-7978576(+)$1	1	98	137	13.8410
((.(((((((.((.((((.....)))))).))...))))	chr19:575000-575240(+)$1	1	114	153	13.1154
((..((((((((.(((((.....)))))..)))..)).)	chr9:101867329-101867617(+)$1	1	121	160	13.3360
((((.(.(((...(((((.....)))))....))).)))	chr11:2407199-2407452(+)$1	1	198	237	14.7960
(((.(.((((.(.(......).))))).).))).)).))	chr14:105259584-105259830(-)$1	1	108	147	11.6607
(.((.(.(((....((((.....))))....))).))).	chr14:104164250-104164500(+)$1	1	149	188	13.6730
(.(((((.(.(((..((((....))))..).))))))))	chr7:127671501-127671759(+)$1	1	165	204	13.1065
..(((..((((..(((.(.....).)))..))))..)))	chr19:40737884-40738136(-)$1	1	23	62	13.2992
((((((.((.....((((.....))))....)).)).))	chr8:101963093-101963400(-)$1	1	154	193	16.0671
((.((....(.(.(((((.....))))).).)..)).))	chr18:3451699-3451979(+)$1	1	202	241	13.4268
(.((((((.....((((.(.....).)))))))))).))	chr19:18554140-18554408(-)$1	1	116	155	11.9411
((((((((..(.((.((((....)))).)))..))))))	chr19:1472927-1473199(-)$1	1	212	251	13.5374
((..((....((((..(((.....)))....))))...)	chr19:18536754-18537007(+)$1	1	168	207	12.8512
((((((.(((...((.(......).))..))).))).))	chr2:191513905-191514192(+)$1	1	130	169	13.5000
(((((((((((((.((((.....)))).))).))...))	chr10:102759098-102759366(+)$1	1	3	42	15.2312
(((((.(((((((((.((.....))..)))))))))...	chr1:26232475-26232781(-)$1	1	44	83	12.4796
)))((((((...(((.(((......))).).)).)))))	chr11:46382999-46383254(+)$1	1	175	214	11.9487
(((((((((...((.(((.....))).))...)).))))	chr17:75415723-75416002(+)$1	1	174	213	14.0039
)))).(((((((((((((......).)))))))))))).	chr9:140445562-140445832(+)$1	1	135	174	12.4707
)))))))(((((((((((.....))))....)))))))(	chr11:506114-506397(-)$1	1	43	82	15.2220
((.(((.((((((..((((....)))).)).))))))).	chr20:31172308-31172546(-)$1	1	87	126	11.9564
((((((.(((.(.((((......)))).)))))))..))	chr11:868512-868810(-)$1	1	214	253	14.7726
((((...((((...((((....))))...))))..))))	chr2:48011218-48011481(+)$1	1	83	122	12.9396
(((((((...(((..((((....))))..)))..)))))	chr20:32254576-32254803(-)$1	1	179	218	15.1821
((((((.((.((...((((....))))...)).)).)))	chr1:228328771-228329043(+)$1	1	207	246	13.3740
(((((...((..((((((.....))))))..))....))	chr11:843611-843894(+)$1	1	31	70	11.8976
((((((((.((..(((((......)))))..))))))))	chr19:18547563-18547871(-)$1	1	248	287	14.2461
((((..(((.((((..((((....))))...)).)))))	chr9:139730333-139730579(+)$1	1	93	132	11.7655
..(((..(.(((.((((..(......)..)))).))).)	chr7:77166711-77166985(+)$1	1	99	138	12.8726
..((((.(..((.((((......)))).))..).)))).	chr19:55855875-55856129(+)$1	1	59	98	13.6675
(.((((....(((.((((....)))))))....))))..	chr1:32827742-32828012(-)$1	1	57	96	12.3822
(.(((((((((..(((((.....)))))..)))))))))	chr8:26240670-26241000(+)$1	1	276	315	15.1059
((((((((..(.((.((((....)))).)))..))))))	chr19:1472858-1473083(-)$1	1	96	135	13.5374
(((.((.(((((.(((((....)))).).))))..).))	chr3:33481597-33481848(-)$1	1	188	227	11.6424
((((((.((.....((((.....))))....)).)).))	chr8:101962998-101963293(-)$1	1	47	86	16.0671
..(((..(((....(.(((...))).)...)))..))).	chr4:2936000-2936301(-)$1	1	51	90	14.5906
((.((((((.(.(.((((......)))).))))))))..	chr1:1189357-1189635(-)$1	1	32	71	13.9708
(((((....(((((.((((....))))..).))))....	chr19:1104622-1104879(+)$1	1	195	234	13.2205

#PSSM
e : 0.19	d : 0.14	i : 0.14	f : 0.08	! : 0.08	c : 0.07	b : 0.05	g : 0.03	h : 0.03	" : 0.03	a : 0.03	= : 0.03	: : 0.01	# : 0.01	C : 0.01	
e : 0.17	d : 0.17	i : 0.12	[ : 0.10	f : 0.08	c : 0.07	= : 0.05	! : 0.05	g : 0.03	" : 0.03	b : 0.03	# : 0.01	: : 0.01	h : 0.01	
d : 0.21	c : 0.14	e : 0.14	i : 0.14	f : 0.10	! : 0.07	[ : 0.07	= : 0.05	g : 0.03	# : 0.01	b : 0.01	
d : 0.15	f : 0.15	c : 0.14	i : 0.14	! : 0.08	e : 0.07	= : 0.05	[ : 0.05	g : 0.03	" : 0.03	# : 0.03	b : 0.03	
f : 0.14	c : 0.14	i : 0.14	b : 0.12	d : 0.10	e : 0.08	" : 0.05	= : 0.05	g : 0.03	! : 0.03	[ : 0.03	# : 0.01	a : 0.01	: : 0.01	
i : 0.14	b : 0.12	f : 0.12	d : 0.08	" : 0.08	e : 0.07	# : 0.07	= : 0.07	c : 0.07	! : 0.07	[ : 0.05	a : 0.03	
[ : 0.19	i : 0.15	# : 0.10	f : 0.10	c : 0.08	e : 0.07	= : 0.07	! : 0.07	d : 0.05	" : 0.05	b : 0.03	
c : 0.15	b : 0.12	# : 0.10	d : 0.10	i : 0.10	= : 0.08	f : 0.08	" : 0.07	e : 0.05	a : 0.05	! : 0.01	[ : 0.01	g : 0.01	
c : 0.21	b : 0.15	d : 0.12	# : 0.10	= : 0.07	f : 0.07	i : 0.05	! : 0.05	e : 0.03	" : 0.03	[ : 0.03	a : 0.01	$ : 0.01	g : 0.01	
c : 0.22	d : 0.12	# : 0.08	[ : 0.08	" : 0.08	! : 0.08	$ : 0.07	= : 0.07	b : 0.07	i : 0.03	f : 0.01	a : 0.01	g : 0.01	
c : 0.21	b : 0.10	d : 0.10	# : 0.08	" : 0.08	$ : 0.07	a : 0.07	= : 0.07	! : 0.07	[ : 0.07	i : 0.03	g : 0.01	
c : 0.17	" : 0.14	b : 0.12	! : 0.10	a : 0.08	# : 0.07	$ : 0.07	[ : 0.07	= : 0.07	d : 0.05	i : 0.01	g : 0.01	
[ : 0.15	! : 0.14	b : 0.14	" : 0.12	c : 0.08	# : 0.07	$ : 0.07	= : 0.05	a : 0.05	d : 0.03	e : 0.01	i : 0.01	g : 0.01	f : 0.01	
d : 0.14	! : 0.14	e : 0.12	b : 0.12	" : 0.08	[ : 0.08	a : 0.07	$ : 0.05	= : 0.05	c : 0.03	# : 0.03	i : 0.01	g : 0.01	f : 0.01	
d : 0.40	e : 0.14	[ : 0.10	! : 0.10	c : 0.05	= : 0.05	" : 0.03	a : 0.03	o : 0.01	b : 0.01	i : 0.01	f : 0.01	
d : 0.56	e : 0.14	c : 0.08	[ : 0.08	= : 0.03	! : 0.03	a : 0.01	o : 0.01	f : 0.01	
d : 0.57	e : 0.14	c : 0.12	b : 0.05	= : 0.03	o : 0.01	[ : 0.01	a : 0.01	f : 0.01	
d : 0.45	o : 0.12	e : 0.12	c : 0.10	a : 0.07	b : 0.05	l : 0.01	[ : 0.01	f : 0.01	! : 0.01	
n : 0.35	o : 0.26	d : 0.17	c : 0.07	m : 0.05	l : 0.03	e : 0.01	a : 0.01	! : 0.01	
n : 0.38	o : 0.28	m : 0.21	l : 0.07	c : 0.01	d : 0.01	a : 0.01	
n : 0.38	o : 0.28	m : 0.24	l : 0.05	c : 0.01	a : 0.01	
n : 0.38	o : 0.28	m : 0.24	l : 0.03	c : 0.01	d : 0.01	] : 0.01	
n : 0.38	o : 0.28	m : 0.19	d : 0.07	c : 0.03	e : 0.01	a : 0.01	
d : 0.45	o : 0.17	e : 0.10	b : 0.05	c : 0.05	a : 0.05	m : 0.03	n : 0.03	] : 0.01	f : 0.01	
d : 0.54	e : 0.14	c : 0.10	b : 0.05	] : 0.05	a : 0.05	o : 0.03	f : 0.01	
d : 0.52	c : 0.15	e : 0.14	] : 0.10	b : 0.01	2 : 0.01	f : 0.01	o : 0.01	
d : 0.49	c : 0.14	e : 0.14	a : 0.05	] : 0.05	= : 0.05	b : 0.01	2 : 0.01	3 : 0.01	f : 0.01	
2 : 0.17	] : 0.15	4 : 0.14	e : 0.12	d : 0.10	c : 0.08	b : 0.05	= : 0.05	3 : 0.05	i : 0.01	f : 0.01	a : 0.01	
2 : 0.31	4 : 0.15	b : 0.12	] : 0.08	3 : 0.07	a : 0.05	= : 0.05	c : 0.05	e : 0.03	d : 0.01	i : 0.01	f : 0.01	
2 : 0.17	4 : 0.17	c : 0.12	a : 0.12	d : 0.08	3 : 0.08	] : 0.07	b : 0.07	= : 0.05	e : 0.01	i : 0.01	
c : 0.22	4 : 0.17	d : 0.10	] : 0.10	a : 0.08	2 : 0.07	3 : 0.05	= : 0.05	f : 0.03	b : 0.03	i : 0.03	e : 0.01	
c : 0.22	b : 0.17	d : 0.15	2 : 0.08	= : 0.07	3 : 0.05	i : 0.05	f : 0.05	e : 0.03	4 : 0.03	a : 0.01	] : 0.01	g : 0.01	
c : 0.19	b : 0.17	d : 0.15	2 : 0.10	= : 0.07	f : 0.07	] : 0.05	i : 0.05	e : 0.03	3 : 0.03	g : 0.01	a : 0.01	4 : 0.01	
] : 0.17	2 : 0.12	c : 0.10	d : 0.10	f : 0.08	= : 0.08	i : 0.08	e : 0.05	3 : 0.05	b : 0.05	4 : 0.03	a : 0.01	g : 0.01	
b : 0.15	d : 0.12	f : 0.12	i : 0.10	c : 0.08	= : 0.08	2 : 0.08	e : 0.07	3 : 0.05	] : 0.05	4 : 0.03	g : 0.01	
b : 0.15	f : 0.14	i : 0.12	e : 0.08	d : 0.08	= : 0.08	3 : 0.07	c : 0.07	4 : 0.05	] : 0.03	a : 0.03	2 : 0.03	g : 0.01	
] : 0.21	f : 0.12	c : 0.10	i : 0.10	d : 0.08	3 : 0.08	e : 0.07	4 : 0.05	= : 0.05	2 : 0.03	b : 0.03	a : 0.01	g : 0.01	
d : 0.14	i : 0.14	f : 0.12	e : 0.10	c : 0.10	b : 0.08	3 : 0.08	g : 0.05	= : 0.05	2 : 0.03	] : 0.03	a : 0.01	4 : 0.01	
i : 0.14	d : 0.12	b : 0.10	f : 0.10	e : 0.08	c : 0.08	] : 0.05	: : 0.05	3 : 0.05	g : 0.03	= : 0.03	a : 0.03	2 : 0.03	4 : 0.03	B : 0.01	

#score	775.6141673195646
#seq	57
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF545FMX_NPM1_transcript_m1_run1.txt

#BEAR
cc^^^^^^^^^^^^^^^^^^^cc	chr14:85738209-85738441(+)$1	232	187	210	15.3420
h[bbxxxxxxxxxxxxxxxbb]h	chr10:128256271-128256489(-)$1	218	115	138	16.7869
bb[bbvvvvvvvvvvvvvbb]bb	chr4:174252984-174253324(-)$1	340	1	24	22.0703
c!!ddddtttttttttttdddd2	chr19:893482-893690(+)$1	208	75	98	19.4067
ggggggtttttttttttgggggg	chr2:61764756-61765004(-)$1	248	53	76	19.9132
dd!!bbvvvvvvvvvvvvvbb22	chr2:232325089-232325328(-)$1	239	88	111	23.8505
ff[cccuuuuuuuuuuuuccc]f	chr7:103029314-103029525(-)$1	211	170	193	23.4368
[bb[bbvvvvvvvvvvvvvbb]b	chr2:232326226-232326502(-)$1	276	71	94	23.4488
dd!!bbvvvvvvvvvvvvvbb22	chr2:232325128-232325375(-)$1	247	135	158	23.8505
ff[cccuuuuuuuuuuuuccc]f	chr7:103029306-103029509(-)$1	203	154	177	23.4368
ffffwwwwwwwwwwwwwwfffff	chr11:618790-619008(-)$1	218	37	60	21.7685
fffffftttttttttttffffff	chr19:56181701-56182026(+)$1	325	116	139	20.1781

#otherMatches

#Seq PSSM
UCUCCCAGCCAAUACUACAUUGA	chr14:85738209-85738441(+)$1	232	187	210	15.3420
GCACCAUCCCCCAUCCCUUGUCC	chr10:128256271-128256489(-)$1	218	115	138	16.7869
GGCUCAaagaagaagaacgaacc	chr4:174252984-174253324(-)$1	340	1	24	22.0703
gacacgcaaauucgugaagcguu	chr19:893482-893690(+)$1	208	75	98	19.4067
CCCAGAUUAAUUCCCCUUUUGGG	chr2:61764756-61765004(-)$1	248	53	76	19.9132
GAAAUGGCCAAACAGAAAGCAGC	chr2:232325089-232325328(-)$1	239	88	111	23.8505
UUGAUGAUUUCUAGUUAGCGUGA	chr7:103029314-103029525(-)$1	211	170	193	23.4368
AGugaugaagaggaggaugauga	chr2:232326226-232326502(-)$1	276	71	94	23.4488
GAAAUGGCCAAACAGAAAGCAGC	chr2:232325128-232325375(-)$1	247	135	158	23.8505
UUGAUGAUUUCUAGUUAGCGUGA	chr7:103029306-103029509(-)$1	203	154	177	23.4368
CACCAACCAGCCACUCCCGGUGG	chr11:618790-619008(-)$1	218	37	60	21.7685
gugCACCCUGCUGUCCCGUGCAC	chr19:56181701-56182026(+)$1	325	116	139	20.1781

#DB
((...................))	chr14:85738209-85738441(+)$1	1	187	210	15.3420
(.((...............)).)	chr10:128256271-128256489(-)$1	1	115	138	16.7869
((.((.............)).))	chr4:174252984-174253324(-)$1	1	1	24	22.0703
(..((((...........)))).	chr19:893482-893690(+)$1	1	75	98	19.4067
((((((...........))))))	chr2:61764756-61765004(-)$1	1	53	76	19.9132
((..((.............))..	chr2:232325089-232325328(-)$1	1	88	111	23.8505
((.(((............))).)	chr7:103029314-103029525(-)$1	1	170	193	23.4368
.((.((.............)).)	chr2:232326226-232326502(-)$1	1	71	94	23.4488
((..((.............))..	chr2:232325128-232325375(-)$1	1	135	158	23.8505
((.(((............))).)	chr7:103029306-103029509(-)$1	1	154	177	23.4368
((((..............)))))	chr11:618790-619008(-)$1	1	37	60	21.7685
((((((...........))))))	chr19:56181701-56182026(+)$1	1	116	139	20.1781

#PSSM
f : 0.33	c : 0.16	d : 0.16	h : 0.08	b : 0.08	g : 0.08	[ : 0.08	
f : 0.33	b : 0.16	d : 0.16	c : 0.08	[ : 0.08	! : 0.08	g : 0.08	
[ : 0.25	! : 0.25	b : 0.16	f : 0.16	^ : 0.08	g : 0.08	
b : 0.16	! : 0.16	c : 0.16	f : 0.16	^ : 0.08	d : 0.08	g : 0.08	[ : 0.08	
b : 0.33	c : 0.16	^ : 0.08	x : 0.08	d : 0.08	g : 0.08	w : 0.08	f : 0.08	
b : 0.25	c : 0.16	^ : 0.08	x : 0.08	v : 0.08	d : 0.08	g : 0.08	w : 0.08	f : 0.08	
v : 0.33	t : 0.16	u : 0.16	^ : 0.08	x : 0.08	d : 0.08	w : 0.08	
v : 0.33	t : 0.25	u : 0.16	^ : 0.08	x : 0.08	w : 0.08	
v : 0.33	t : 0.25	u : 0.16	^ : 0.08	x : 0.08	w : 0.08	
v : 0.33	t : 0.25	u : 0.16	^ : 0.08	x : 0.08	w : 0.08	
v : 0.33	t : 0.25	u : 0.16	^ : 0.08	x : 0.08	w : 0.08	
v : 0.33	t : 0.25	u : 0.16	^ : 0.08	x : 0.08	w : 0.08	
v : 0.33	t : 0.25	u : 0.16	^ : 0.08	x : 0.08	w : 0.08	
v : 0.33	t : 0.25	u : 0.16	^ : 0.08	x : 0.08	w : 0.08	
v : 0.33	t : 0.25	u : 0.16	^ : 0.08	x : 0.08	w : 0.08	
v : 0.33	t : 0.25	u : 0.16	^ : 0.08	x : 0.08	w : 0.08	
v : 0.33	t : 0.25	u : 0.16	^ : 0.08	x : 0.08	w : 0.08	
v : 0.33	u : 0.16	^ : 0.08	x : 0.08	t : 0.08	g : 0.08	w : 0.08	f : 0.08	
v : 0.25	c : 0.16	f : 0.16	^ : 0.08	x : 0.08	b : 0.08	d : 0.08	g : 0.08	
b : 0.41	c : 0.16	f : 0.16	^ : 0.08	d : 0.08	g : 0.08	
b : 0.33	c : 0.16	f : 0.16	^ : 0.08	] : 0.08	d : 0.08	g : 0.08	
] : 0.33	2 : 0.16	f : 0.16	c : 0.08	b : 0.08	d : 0.08	g : 0.08	
f : 0.33	2 : 0.25	b : 0.16	c : 0.08	h : 0.08	g : 0.08	

#score	253.48975766068332
#seq	12
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_transcript_m3_run2.txt

#BEAR
ffffffqqqqqqqqffff	chr21:20062237-20062528(-)$1	291	111	129	13.4448
ggggggqqqqqqqqgggg	chr11:95539418-95539720(+)$1	302	205	223	13.5799
:eeeeeqqqqqqqqeeee	chr3:195153024-195153327(-)$1	303	55	73	13.6031
======qqqqqqqq====	chr5:54980885-54981151(-)$1	266	208	226	13.6440
dddd[aqqqqqqqqa22d	chr6:147590870-147591146(+)$1	276	89	107	12.8167
ffffffqqqqqqqqffff	chr12:132221699-132221970(+)$1	271	200	218	13.4448
f!!cccqqqqqqqqccc3	chr7:140529096-140529354(-)$1	258	103	121	13.8867
b[ddddqqqqqqqqdddd	chr18:34543075-34543403(+)$1	328	164	182	13.8507
ceeeeeqqqqqqqqeeee	chrX:130951000-130951255(-)$1	255	112	130	14.3804
cc[cccqqqqqqqqccc2	chr2:109436466-109436723(+)$1	257	90	108	13.6312
""ddddqqqqqqqqdddd	chr2:109380767-109381073(+)$1	306	117	135	14.0410
ccddddqqqqqqqqdddd	chr11:5338801-5339067(-)$1	266	91	109	13.9098
:eeeeeqqqqqqqqeeee	chr7:119528428-119528802(-)$1	374	343	361	13.6031
g:ddddqqqqqqqqdddd	chr2:3475328-3475583(+)$1	255	119	137	13.1120
&&ddddqqqqqqqqdddd	chr11:62297373-62297643(-)$1	270	83	101	12.9070
f!!cccqqqqqqqqcccf	chr7:5104865-5105134(+)$1	269	72	90	13.9057
ffffffqqqqqqqqffff	chr1:246421062-246421395(-)$1	333	294	312	13.4448
!ddddaqqqqqqqqa]dd	chr4:1967855-1968112(+)$1	257	46	64	13.7294
cc[cccqqqqqqqqccc]	chr8:91385288-91385578(+)$1	290	263	281	13.9070
!eeeeeqqqqqqqqeeee	chr13:50795642-50795954(+)$1	312	17	35	14.5311
a[ddddqqqqqqqqdddd	chr3:69837936-69838242(+)$1	306	106	124	14.0403
c[ddddqqqqqqqqdddd	chr16:20718105-20718375(+)$1	270	18	36	14.0183
::ddddqqqqqqqqdddd	chr6:148087043-148087301(+)$1	258	234	252	12.3100
ccc!!aqqqqqqqqa22c	chr11:62296330-62296607(-)$1	277	14	32	12.7702
"eeeeeqqqqqqqqeeee	chr6:148165873-148166178(+)$1	305	154	172	14.4774
eeddddqqqqqqqqdddd	chr7:152342617-152342868(-)$1	251	110	128	14.0167
ffffffqqqqqqqqffff	chr5:53631454-53631708(+)$1	254	146	164	13.4448
ddd[bbqqqqqqqqbb]d	chr1:39801287-39801526(+)$1	239	209	227	12.5898
ffffffqqqqqqqqffff	chr17:41463528-41463783(-)$1	255	85	103	13.4448
[eeeeeqqqqqqqqeeee	chr16:20687882-20688175(+)$1	293	152	170	14.5136
!eeeeeqqqqqqqqeeee	chr17:48815952-48816215(+)$1	263	47	65	14.5311
eee!!aqqqqqqqqa22e	chr8:91254180-91254471(+)$1	291	104	122	13.2634
ffffffqqqqqqqqffff	chr1:117991669-117991964(+)$1	295	51	69	13.4448
gg[cccqqqqqqqqccc]	chr21:19972003-19972368(-)$1	365	92	110	13.9738
[a[cccqqqqqqqqccc]	chr7:22686804-22687091(-)$1	287	21	39	14.0633
bb[cccqqqqqqqqccc]	chr5:53660339-53660599(+)$1	260	151	169	13.5497
ffffffqqqqqqqqffff	chr6:147622681-147622945(+)$1	264	74	92	13.4448
[eeeeeqqqqqqqqeeee	chr1:246437960-246438255(-)$1	295	190	208	14.5136
[eeeeeqqqqqqqqeeee	chr4:151831550-151831806(-)$1	256	73	91	14.5136
eee[bbqqqqqqqqbbee	chr11:62286358-62286616(-)$1	258	213	231	13.2034
##ddddqqqqqqqqdddd	chr6:167405634-167405896(-)$1	262	219	237	14.0109
::ddddqqqqqqqqdddd	chrX:73219715-73219990(+)$1	275	212	230	12.3100
Feeeeeqqqqqqqqeeee	chr18:1287699-1287970(-)$1	271	136	154	14.0892
ggggggqqqqqqqqgggg	chr14:27994039-27994310(-)$1	271	184	202	13.5799
:eeeeeqqqqqqqqeeee	chr6:118020929-118021192(+)$1	263	8	26	13.6031
ee[cccqqqqqqqqccc]	chr15:31054360-31054612(+)$1	252	33	51	14.0139
##ddddqqqqqqqqdddd	chr15:65981304-65981582(-)$1	278	116	134	14.0109
deeeeeqqqqqqqqeeee	chr3:195151646-195151915(-)$1	269	247	265	14.2300
ffffffqqqqqqqqffff	chr15:57285348-57285616(+)$1	268	188	206	13.4448
ffffffqqqqqqqqffff	chr17:41245941-41246199(-)$1	258	2	20	13.4448
eeecccqqqqqqqqcccC	chr22:48169447-48169740(+)$1	293	271	289	12.9364
:eeeeeqqqqqqqqeeee	chr8:91269425-91269704(+)$1	279	194	212	13.6031
!eeeeeqqqqqqqqeeee	chr12:46794372-46794657(+)$1	285	186	204	14.5311
ffffffqqqqqqqqffff	chr8:91417864-91418119(+)$1	255	235	253	13.4448
eeecccqqqqqqqqccc]	chr7:22679565-22679822(-)$1	257	81	99	14.1007
::ddddqqqqqqqqdddd	chr3:196635285-196635538(+)$1	253	115	133	12.3100
ffffffqqqqqqqqffff	chr18:75690816-75691039(-)$1	223	140	158	13.4448
eee[bbqqqqqqqqbb]e	chr6:147618298-147618540(+)$1	242	147	165	13.0903
ffffffqqqqqqqqffff	chr11:5443882-5444206(-)$1	324	96	114	13.4448
$$$cccqqqqqqqqccc2	chr11:3412370-3412623(+)$1	253	88	106	12.9652
bb[cccqqqqqqqqccc]	chr13:50673244-50673571(+)$1	327	28	46	13.5497
eee[bbqqqqqqqqbb]e	chr9:127373303-127373556(-)$1	253	130	148	13.0903
deeeeeqqqqqqqqeeee	chr13:23906185-23906508(-)$1	323	186	204	14.2300
eee[bbqqqqqqqqbb44	chr7:65405393-65405712(+)$1	319	28	46	12.8955
!!ddddqqqqqqqqdddd	chr18:75690275-75690527(-)$1	252	33	51	14.1763
e:ddddqqqqqqqqdddd	chr8:91018065-91018366(+)$1	301	223	241	13.0435
g:ddddqqqqqqqqdddd	chr11:65267607-65267815(+)$1	208	155	173	13.1120
======qqqqqqqq====	chr6:148177310-148177581(+)$1	271	236	254	13.6440
!eeeeeqqqqqqqqeeee	chr13:51047774-51048052(+)$1	278	88	106	14.5311

#otherMatches

#Seq PSSM
aagcugaacguaaacagc	chr21:20062237-20062528(-)$1	291	111	129	13.4448
ucccuuuccuagccaagg	chr11:95539418-95539720(+)$1	302	205	223	13.5799
aucagugaaauagaauug	chr3:195153024-195153327(-)$1	303	55	73	13.6031
uuuuaaaaauaugcuuga	chr5:54980885-54981151(-)$1	266	208	226	13.6440
cugugguacgacuucaag	chr6:147590870-147591146(+)$1	276	89	107	12.8167
GGUCGCAGACAGGAGUGG	chr12:132221699-132221970(+)$1	271	200	218	13.4448
uggugcuggcauauguag	chr7:140529096-140529354(-)$1	258	103	121	13.8867
UGUGAAGAUCAGAUUUCA	chr18:34543075-34543403(+)$1	328	164	182	13.8507
UGACCAGGGCGGGGUGGU	chrX:130951000-130951255(-)$1	255	112	130	14.3804
acagauaaucuaaaauug	chr2:109436466-109436723(+)$1	257	90	108	13.6312
AGUUUGAAGAAGCCCAGA	chr2:109380767-109381073(+)$1	306	117	135	14.0410
ggggauguaaauuaguuc	chr11:5338801-5339067(-)$1	266	91	109	13.9098
ACCAAUGCUGUCCAGUUG	chr7:119528428-119528802(-)$1	374	343	361	13.6031
CAGAAGCAACUGAUCUUC	chr2:3475328-3475583(+)$1	255	119	137	13.1120
AAUGAGUAUAAAGCCUCA	chr11:62297373-62297643(-)$1	270	83	101	12.9070
UUCAGGAGAGAAACCCUA	chr7:5104865-5105134(+)$1	269	72	90	13.9057
uuuggggacacagaucca	chr1:246421062-246421395(-)$1	333	294	312	13.4448
ccuugcaaguaaugguca	chr4:1967855-1968112(+)$1	257	46	64	13.7294
acauggagaaaagaccag	chr8:91385288-91385578(+)$1	290	263	281	13.9070
ACCUGAGUUGGCAAUUGG	chr13:50795642-50795954(+)$1	312	17	35	14.5311
ugcaauggaaugaaguug	chr3:69837936-69838242(+)$1	306	106	124	14.0403
uccagcccaucucagcug	chr16:20718105-20718375(+)$1	270	18	36	14.0183
aauggaugaaaccuucua	chr6:148087043-148087301(+)$1	258	234	252	12.3100
GGCUCCAAAUUUAAGAUG	chr11:62296330-62296607(-)$1	277	14	32	12.7702
aguuucagacgggaggaa	chr6:148165873-148166178(+)$1	305	154	172	14.4774
agagugccugcuauuacu	chr7:152342617-152342868(-)$1	251	110	128	14.0167
caucuuucaaaacuaagg	chr5:53631454-53631708(+)$1	254	146	164	13.4448
CUGCUUGACUUUAAAACC	chr1:39801287-39801526(+)$1	239	209	227	12.5898
aaagaucagaaugugucu	chr17:41463528-41463783(-)$1	255	85	103	13.4448
acagucauggaaaaggcu	chr16:20687882-20688175(+)$1	293	152	170	14.5136
auuugaaaauaaaauuaa	chr17:48815952-48816215(+)$1	263	47	65	14.5311
AUGAACAUUUUGUAGGGU	chr8:91254180-91254471(+)$1	291	104	122	13.2634
guugucucuguucugacg	chr1:117991669-117991964(+)$1	295	51	69	13.4448
UGCUGUGCCAUUAAAUAU	chr21:19972003-19972368(-)$1	365	92	110	13.9738
augugagaacacuaucag	chr7:22686804-22687091(-)$1	287	21	39	14.0633
CCAACACUUCCCCAUGUA	chr5:53660339-53660599(+)$1	260	151	169	13.5497
UUUAGUCUCUCAAAACUA	chr6:147622681-147622945(+)$1	264	74	92	13.4448
ACUGGCUCUCUCUUGUCA	chr1:246437960-246438255(-)$1	295	190	208	14.5136
uuauuacaaggcuaugau	chr4:151831550-151831806(-)$1	256	73	91	14.5136
CAAAGUGCAGGCAAACUU	chr11:62286358-62286616(-)$1	258	213	231	13.2034
aaucccaacacuucggga	chr6:167405634-167405896(-)$1	262	219	237	14.0109
aauagaaauuuagaucua	chrX:73219715-73219990(+)$1	275	212	230	12.3100
agaacuaacaaacaaguu	chr18:1287699-1287970(-)$1	271	136	154	14.0892
gauaucuuggauaugaua	chr14:27994039-27994310(-)$1	271	184	202	13.5799
uuaccaaaacagcauggu	chr6:118020929-118021192(+)$1	263	8	26	13.6031
cucuauagaauagaauaa	chr15:31054360-31054612(+)$1	252	33	51	14.0139
aaucuugagccagagaga	chr15:65981304-65981582(-)$1	278	116	134	14.0109
aacuauauuuuuaaaugg	chr3:195151646-195151915(-)$1	269	247	265	14.2300
gagggaugagaacuuucc	chr15:57285348-57285616(+)$1	268	188	206	13.4448
UCAGUAGAGAGUAAUAUU	chr17:41245941-41246199(-)$1	258	2	20	13.4448
uccggagaaaccaauccu	chr22:48169447-48169740(+)$1	293	271	289	12.9364
cucaauggugaaagauug	chr8:91269425-91269704(+)$1	279	194	212	13.6031
acagcacauuuguaugcu	chr12:46794372-46794657(+)$1	285	186	204	14.5311
uucuagaagaaaacuuag	chr8:91417864-91418119(+)$1	255	235	253	13.4448
AAAGUUAGGGAGAAGGCA	chr7:22679565-22679822(-)$1	257	81	99	14.1007
aacuagagaagcggcugg	chr3:196635285-196635538(+)$1	253	115	133	12.3100
CGUAUUAUAGAAGCAAUA	chr18:75690816-75691039(-)$1	223	140	158	13.4448
ugaaagaacaaaaccugu	chr6:147618298-147618540(+)$1	242	147	165	13.0903
AUAUUUUUCAGAAUAAGU	chr11:5443882-5444206(-)$1	324	96	114	13.4448
CAGGUCAUUUGUAAGGCA	chr11:3412370-3412623(+)$1	253	88	106	12.9652
ucaacccaaaagaaggug	chr13:50673244-50673571(+)$1	327	28	46	13.5497
AUAAAAGAAAGUUAUUGU	chr9:127373303-127373556(-)$1	253	130	148	13.0903
AUCUCGAGAAUGUACGAG	chr13:23906185-23906508(-)$1	323	186	204	14.2300
cucaaggaaagaaacuau	chr7:65405393-65405712(+)$1	319	28	46	12.8955
CAUAUUAUAGAAACAAUA	chr18:75690275-75690527(-)$1	252	33	51	14.1763
ugauggaucugccaccau	chr8:91018065-91018366(+)$1	301	223	241	13.0435
UAAUUCAAGAUCAAGAGU	chr11:65267607-65267815(+)$1	208	155	173	13.1120
uguaugcuuuaauaugug	chr6:148177310-148177581(+)$1	271	236	254	13.6440
AGUCUUUUAAUUAUGGGA	chr13:51047774-51048052(+)$1	278	88	106	14.5311

#DB
((((((........))))	chr21:20062237-20062528(-)$1	1	111	129	13.4448
((((((........))))	chr11:95539418-95539720(+)$1	1	205	223	13.5799
.(((((........))))	chr3:195153024-195153327(-)$1	1	55	73	13.6031
((((((........))))	chr5:54980885-54981151(-)$1	1	208	226	13.6440
((((.(........)..)	chr6:147590870-147591146(+)$1	1	89	107	12.8167
((((((........))))	chr12:132221699-132221970(+)$1	1	200	218	13.4448
(..(((........))).	chr7:140529096-140529354(-)$1	1	103	121	13.8867
(.((((........))))	chr18:34543075-34543403(+)$1	1	164	182	13.8507
((((((........))))	chrX:130951000-130951255(-)$1	1	112	130	14.3804
((.(((........))).	chr2:109436466-109436723(+)$1	1	90	108	13.6312
..((((........))))	chr2:109380767-109381073(+)$1	1	117	135	14.0410
((((((........))))	chr11:5338801-5339067(-)$1	1	91	109	13.9098
.(((((........))))	chr7:119528428-119528802(-)$1	1	343	361	13.6031
).((((........))))	chr2:3475328-3475583(+)$1	1	119	137	13.1120
..((((........))))	chr11:62297373-62297643(-)$1	1	83	101	12.9070
(..(((........))))	chr7:5104865-5105134(+)$1	1	72	90	13.9057
((((((........))))	chr1:246421062-246421395(-)$1	1	294	312	13.4448
.(((((........).))	chr4:1967855-1968112(+)$1	1	46	64	13.7294
((.(((........))).	chr8:91385288-91385578(+)$1	1	263	281	13.9070
.(((((........))))	chr13:50795642-50795954(+)$1	1	17	35	14.5311
(.((((........))))	chr3:69837936-69838242(+)$1	1	106	124	14.0403
(.((((........))))	chr16:20718105-20718375(+)$1	1	18	36	14.0183
..((((........))))	chr6:148087043-148087301(+)$1	1	234	252	12.3100
(((..(........)..)	chr11:62296330-62296607(-)$1	1	14	32	12.7702
.(((((........))))	chr6:148165873-148166178(+)$1	1	154	172	14.4774
((((((........))))	chr7:152342617-152342868(-)$1	1	110	128	14.0167
((((((........))))	chr5:53631454-53631708(+)$1	1	146	164	13.4448
(((.((........)).)	chr1:39801287-39801526(+)$1	1	209	227	12.5898
((((((........))))	chr17:41463528-41463783(-)$1	1	85	103	13.4448
.(((((........))))	chr16:20687882-20688175(+)$1	1	152	170	14.5136
.(((((........))))	chr17:48815952-48816215(+)$1	1	47	65	14.5311
(((..(........)..)	chr8:91254180-91254471(+)$1	1	104	122	13.2634
((((((........))))	chr1:117991669-117991964(+)$1	1	51	69	13.4448
((.(((........))).	chr21:19972003-19972368(-)$1	1	92	110	13.9738
.(.(((........))).	chr7:22686804-22687091(-)$1	1	21	39	14.0633
((.(((........))).	chr5:53660339-53660599(+)$1	1	151	169	13.5497
((((((........))))	chr6:147622681-147622945(+)$1	1	74	92	13.4448
.(((((........))))	chr1:246437960-246438255(-)$1	1	190	208	14.5136
.(((((........))))	chr4:151831550-151831806(-)$1	1	73	91	14.5136
(((.((........))))	chr11:62286358-62286616(-)$1	1	213	231	13.2034
..((((........))))	chr6:167405634-167405896(-)$1	1	219	237	14.0109
..((((........))))	chrX:73219715-73219990(+)$1	1	212	230	12.3100
((((((........))))	chr18:1287699-1287970(-)$1	1	136	154	14.0892
((((((........))))	chr14:27994039-27994310(-)$1	1	184	202	13.5799
.(((((........))))	chr6:118020929-118021192(+)$1	1	8	26	13.6031
((.(((........))).	chr15:31054360-31054612(+)$1	1	33	51	14.0139
..((((........))))	chr15:65981304-65981582(-)$1	1	116	134	14.0109
)(((((........))))	chr3:195151646-195151915(-)$1	1	247	265	14.2300
((((((........))))	chr15:57285348-57285616(+)$1	1	188	206	13.4448
((((((........))))	chr17:41245941-41246199(-)$1	1	2	20	13.4448
)))(((........))))	chr22:48169447-48169740(+)$1	1	271	289	12.9364
.(((((........))))	chr8:91269425-91269704(+)$1	1	194	212	13.6031
.(((((........))))	chr12:46794372-46794657(+)$1	1	186	204	14.5311
((((((........))))	chr8:91417864-91418119(+)$1	1	235	253	13.4448
((((((........))).	chr7:22679565-22679822(-)$1	1	81	99	14.1007
..((((........))))	chr3:196635285-196635538(+)$1	1	115	133	12.3100
((((((........))))	chr18:75690816-75691039(-)$1	1	140	158	13.4448
(((.((........)).)	chr6:147618298-147618540(+)$1	1	147	165	13.0903
((((((........))))	chr11:5443882-5444206(-)$1	1	96	114	13.4448
...(((........))).	chr11:3412370-3412623(+)$1	1	88	106	12.9652
((.(((........))).	chr13:50673244-50673571(+)$1	1	28	46	13.5497
(((.((........)).)	chr9:127373303-127373556(-)$1	1	130	148	13.0903
((((((........))))	chr13:23906185-23906508(-)$1	1	186	204	14.2300
(((.((........))..	chr7:65405393-65405712(+)$1	1	28	46	12.8955
..((((........))))	chr18:75690275-75690527(-)$1	1	33	51	14.1763
).((((........))))	chr8:91018065-91018366(+)$1	1	223	241	13.0435
).((((........))))	chr11:65267607-65267815(+)$1	1	155	173	13.1120
((((((........))))	chr6:148177310-148177581(+)$1	1	236	254	13.6440
.(((((........))))	chr13:51047774-51048052(+)$1	1	88	106	14.5311

#PSSM
f : 0.20	e : 0.14	: : 0.10	c : 0.08	! : 0.08	g : 0.07	d : 0.05	[ : 0.05	b : 0.04	= : 0.02	" : 0.02	# : 0.02	& : 0.01	a : 0.01	F : 0.01	$ : 0.01	
e : 0.36	f : 0.17	: : 0.08	c : 0.05	g : 0.04	d : 0.04	! : 0.04	[ : 0.04	= : 0.02	b : 0.02	# : 0.02	" : 0.01	& : 0.01	a : 0.01	$ : 0.01	
e : 0.33	d : 0.27	f : 0.17	[ : 0.10	g : 0.02	= : 0.02	! : 0.02	c : 0.01	$ : 0.01	
d : 0.26	e : 0.23	f : 0.17	c : 0.17	[ : 0.07	g : 0.02	= : 0.02	! : 0.02	
d : 0.24	e : 0.23	f : 0.17	c : 0.17	b : 0.07	g : 0.02	= : 0.02	! : 0.02	[ : 0.01	
e : 0.23	d : 0.23	f : 0.17	c : 0.17	b : 0.07	a : 0.05	g : 0.02	= : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.23	d : 0.23	f : 0.17	c : 0.17	b : 0.07	a : 0.05	g : 0.02	= : 0.02	
e : 0.23	d : 0.23	f : 0.17	c : 0.17	b : 0.07	2 : 0.04	g : 0.02	= : 0.02	] : 0.01	
e : 0.24	d : 0.24	f : 0.17	c : 0.17	2 : 0.04	] : 0.04	g : 0.02	= : 0.02	4 : 0.01	
e : 0.28	d : 0.27	f : 0.18	] : 0.10	g : 0.02	= : 0.02	2 : 0.02	3 : 0.01	c : 0.01	C : 0.01	4 : 0.01	

#score	940.385067028415
#seq	69
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_transcript_m1_run1.txt

#BEAR
eeee[awwwwwwwwwwwwwwaeee	chr20:40117041-40117299(-)$1	258	154	178	21.8886
:ddddwwwwwwwwwwwwwwdddd:	chr20:62612520-62612769(+)$1	249	79	103	19.8954
%eeeeettttttttttteeeee44	chr12:26875295-26875533(-)$1	238	69	93	21.1501
gggggguuuuuuuuuuuugggggg	chr19:16976120-16976421(+)$1	301	178	202	23.2949
gg[cccwwwwwwwwwwwwwwccc]	chr2:242195515-242195762(-)$1	247	188	212	22.3148
ddd[bbuuuuuuuuuuuubb]ddd	chr15:63352965-63353251(+)$1	286	66	90	22.3639
eeeeevvvvvvvvvvvvveeeee5	chr17:61875296-61875571(+)$1	275	222	246	21.9813
fffffftttttttttttffffff:	chr15:44085081-44085319(+)$1	238	143	167	20.8819
GG:cccuuuuuuuuuuuuccceee	chr14:23944336-23944625(+)$1	289	22	46	21.6928
c[eeeeettttttttttteeeee2	chr20:17640751-17640981(-)$1	230	162	186	21.3473
f!!cccvvvvvvvvvvvvvccc22	chr3:38167551-38167847(-)$1	296	203	227	23.5247
cc[cccuuuuuuuuuuuuccc]cc	chr6:131958273-131958515(+)$1	242	95	119	23.7369
iiiiiiuuuuuuuuuuuuiiiiii	chr12:26839317-26839555(-)$1	238	203	227	23.1543
Eeeeeettttttttttteeeee==	chr17:7476055-7476282(+)$1	227	17	41	20.8420
======wwwwwwwwwwwwww====	chr1:46079677-46079940(+)$1	263	91	115	22.2665
ggggggvvvvvvvvvvvvvggggg	chr2:188397942-188398219(+)$1	277	212	236	23.4573
ddd[ccctttttttttttccc]dd	chr16:67174370-67174622(+)$1	252	19	43	22.0906
gggggguuuuuuuuuuuugggggg	chr16:70711599-70711852(-)$1	253	192	216	23.2949
dd!!bbvvvvvvvvvvvvvbb22d	chr6:155578818-155579074(-)$1	256	76	100	22.4387
::cccvvvvvvvvvvvvvccceee	chr2:54785555-54785799(+)$1	244	89	113	21.2666
ddddwwwwwwwwwwwwwwdddd]d	chr8:11660258-11660542(+)$1	284	256	280	20.9100
hhh[ccctttttttttttccc666	chr2:102476007-102476261(+)$1	254	151	175	20.3407
fffffftttttttttttffffff:	chr11:821457-821734(+)$1	277	178	202	20.8819
dd[ccctttttttttttccc333d	chr22:36684234-36684480(-)$1	246	19	43	22.5638
bddddvvvvvvvvvvvvvdddd]b	chr22:38016144-38016407(+)$1	263	181	205	22.0155
$$$$bbuuuuuuuuuuuubb333e	chr6:31636907-31637191(+)$1	284	53	77	21.9638
cccyyyyyyyyyyyyyyyyccc]d	chr12:58112693-58112976(+)$1	283	159	183	20.3803
:ddddwwwwwwwwwwwwwwdddd:	chr6:2248968-2249270(+)$1	302	56	80	19.8954
fffffftttttttttttffffffD	chr7:99697544-99697806(-)$1	262	163	187	20.8833
"""cccvvvvvvvvvvvvvccc44	chr3:49052280-49052547(+)$1	267	219	243	23.6405
:eeeeettttttttttteeeeedd	chr20:34294941-34295143(-)$1	202	65	89	20.7340
%%%bbvvvvvvvvvvvvvbb333d	chr12:111908263-111908623(-)$1	360	207	231	20.6276
fffffyyyyyyyyyyyyyyyyfff	chr2:102472476-102472699(+)$1	223	37	61	20.1293
ddddccctttttttttttccc]dd	chr2:207025972-207026199(+)$1	227	73	97	21.9940
eeeeyyyyyyyyyyyyyyyyeeee	chr6:144863832-144864075(+)$1	243	40	64	20.4084
feeeeewwwwwwwwwwwwwweeee	chr16:2812949-2813209(+)$1	260	89	113	21.7896
fffffftttttttttttffffff:	chr9:140347382-140347615(-)$1	233	149	173	20.8819
fffffauuuuuuuuuuuua]ffff	chr4:187630145-187630398(-)$1	253	152	176	23.1214
:ddddwwwwwwwwwwwwwwdddd:	chr17:80050472-80050685(-)$1	213	111	135	19.8954
gggggguuuuuuuuuuuugggggg	chr11:129992176-129992401(+)$1	225	108	132	23.2949
ggggccctttttttttttccc]gg	chr3:142741240-142741587(+)$1	347	261	285	22.4861
cc[cccvvvvvvvvvvvvvccc]c	chr14:31609002-31609253(-)$1	251	132	156	23.8490
dd[a[bbtttttttttttbb]a]d	chr6:56963756-56964037(+)$1	281	117	141	21.2783
fffffwwwwwwwwwwwwwwfffff	chrX:70793369-70793579(+)$1	210	75	99	21.7456
fffffftttttttttttffffffD	chr2:242440811-242441078(-)$1	267	240	264	20.8833
fffffvvvvvvvvvvvvvffffff	chr2:74597657-74598006(-)$1	349	99	123	22.5352
!!dddduuuuuuuuuuuudddd]d	chr20:57275973-57276257(+)$1	284	14	38	22.8717
ff[cccuuuuuuuuuuuuccc]ff	chr2:27604908-27605157(-)$1	249	154	178	23.6180
gggggguuuuuuuuuuuugggggg	chr17:57812605-57812922(+)$1	317	97	121	23.2949
fffffftttttttttttffffff:	chr15:44085120-44085347(+)$1	227	104	128	20.8819
ggggggwwwwwwwwwwwwwwgggg	chr14:23527905-23528152(-)$1	247	2	26	22.1100
="""bbvvvvvvvvvvvvvbb333	chr2:233659474-233659754(+)$1	280	200	224	22.8776
ffffffwwwwwwwwwwwwwwffff	chr4:39310288-39310587(-)$1	299	175	199	21.5979
[eeeeewwwwwwwwwwwwwweeee	chr6:7565584-7565802(+)$1	218	123	147	21.8966
d[ddddvvvvvvvvvvvvvddddd	chr7:1024495-1024740(+)$1	245	85	109	22.6734
!!ddddvvvvvvvvvvvvvddddd	chr3:49052441-49052690(+)$1	249	94	118	22.8696
dd!!bbvvvvvvvvvvvvvbb22d	chr2:232325141-232325358(-)$1	217	118	142	22.4387
==:cccvvvvvvvvvvvvvccccc	chr2:232327810-232328116(-)$1	306	89	113	22.6211
!!ddddyyyyyyyyyyyyyyyydd	chr12:6692356-6692593(-)$1	237	72	96	19.6763
i[bbwwwwwwwwwwwwwwbb]iii	chr17:62500002-62500333(-)$1	331	86	110	20.6592
=======ttttttttttt======	chr14:34985503-34985779(-)$1	276	13	37	22.0509
eeeeyyyyyyyyyyyyyyyyeeee	chr7:155493467-155493740(+)$1	273	231	255	20.4084
[eeeeettttttttttteeeee]c	chr2:54856268-54856503(+)$1	235	46	70	21.9174
[eeeeeuuuuuuuuuuuueeeee2	chr2:201722593-201722832(-)$1	239	116	140	22.8794

#otherMatches

#Seq PSSM
UGUGUGAUAAUUGAUGAAGCCCAC	chr20:40117041-40117299(-)$1	258	154	178	21.8886
UGAACAAGAAGAAGAAACCGUUCC	chr20:62612520-62612769(+)$1	249	79	103	19.8954
UAUCUUACUGUCAACAAGAGAUUA	chr12:26875295-26875533(-)$1	238	69	93	21.1501
CCGGAAGACCAGGAGAAGUUCCGG	chr19:16976120-16976421(+)$1	301	178	202	23.2949
CCCCAUGGGCAGGAAUAGAAAUGA	chr2:242195515-242195762(-)$1	247	188	212	22.3148
GACCCAUGGUGUGUGUGUUGUGUC	chr15:63352965-63353251(+)$1	286	66	90	22.3639
UCUAUUCCCCCAAAGUUUAUAGAG	chr17:61875296-61875571(+)$1	275	222	246	21.9813
CUCGGUUAAGGGAAAGCGCCGAGA	chr15:44085081-44085319(+)$1	238	143	167	20.8819
UUUCUGUUUUGUUCAACUCAGGGU	chr14:23944336-23944625(+)$1	289	22	46	21.6928
GUGCAGCCCCCCAUUAUCGUUGCU	chr20:17640751-17640981(-)$1	230	162	186	21.3473
GCUCCUUCAUAUAGUAUCUGGGUC	chr3:38167551-38167847(-)$1	296	203	227	23.5247
CUCCAGAUUGCCCAAUCACUGAAG	chr6:131958273-131958515(+)$1	242	95	119	23.7369
aaaauaauaauauuaauauauuuu	chr12:26839317-26839555(-)$1	238	203	227	23.1543
CGGCCAAACCAAUGCGAUGGCCGG	chr17:7476055-7476282(+)$1	227	17	41	20.8420
CUCUUCAAGAAAAUGAGGAGGAGG	chr1:46079677-46079940(+)$1	263	91	115	22.2665
uggaguggaccucaagcaaacucc	chr2:188397942-188398219(+)$1	277	212	236	23.4573
UUUAUGGUUAUUUUUUCCCUACAG	chr16:67174370-67174622(+)$1	252	19	43	22.0906
GGGCAGGGAGGAGAUGGGCUGCCC	chr16:70711599-70711852(-)$1	253	192	216	23.2949
AGGAUGACGCAGAGAAUUACAGAC	chr6:155578818-155579074(-)$1	256	76	100	22.4387
UCCUCAGUAAUUUAUUUCGAGCUU	chr2:54785555-54785799(+)$1	244	89	113	21.2666
GCCCGGAUCUGGGGCAAGGGGCGC	chr8:11660258-11660542(+)$1	284	256	280	20.9100
CAGUUGCAACAAGAACAAGCAUAU	chr2:102476007-102476261(+)$1	254	151	175	20.3407
GGUGCCAAGUUCAUUGAGGUAUCU	chr11:821457-821734(+)$1	277	178	202	20.8819
AGGUGCGGGAGAUGGAGGCAGAGC	chr22:36684234-36684480(-)$1	246	19	43	22.5638
GAGGUGAAAAUCGCAGAGGCCUAC	chr22:38016144-38016407(+)$1	263	181	205	22.0155
AGAAGGGAAAGGAAAGCACCGUGU	chr6:31636907-31637191(+)$1	284	53	77	21.9638
UCUCAACAAACUCAUCAAAAGACU	chr12:58112693-58112976(+)$1	283	159	183	20.3803
UUUCCUUUGCUUUUCACAUGGAAC	chr6:2248968-2249270(+)$1	302	56	80	19.8954
CCAGUUGGUAAGUCUAAGAUUGGG	chr7:99697544-99697806(-)$1	262	163	187	20.8833
ACAGGCCUCAAGAUCCUAAGCCCA	chr3:49052280-49052547(+)$1	267	219	243	23.6405
AAUGUUUCCAACUCUCUAACAUGU	chr20:34294941-34295143(-)$1	202	65	89	20.7340
UCAGCAGUUCCCAAAUCAGCCCCU	chr12:111908263-111908623(-)$1	360	207	231	20.6276
cgucuagaggaguuggagagaagg	chr2:102472476-102472699(+)$1	223	37	61	20.1293
GGUUGAAUUUAAAUGUUUUUCAAG	chr2:207025972-207026199(+)$1	227	73	97	21.9940
CUACAGUCAUCUUUAUUUACGUAG	chr6:144863832-144864075(+)$1	243	40	64	20.4084
GUUCAUCUCCUCAUCCUAAAGUGA	chr16:2812949-2813209(+)$1	260	89	113	21.7896
GGACUCCGCCCCAACCCGAGUCCA	chr9:140347382-140347615(-)$1	233	149	173	20.8819
CACAUCGAACAGGCCAAUGAAUGU	chr4:187630145-187630398(-)$1	253	152	176	23.1214
AGGUGAUGCCCCCCCCCCCCGCCC	chr17:80050472-80050685(-)$1	213	111	135	19.8954
gugguggaggaCCGAGAUUACUAC	chr11:129992176-129992401(+)$1	225	108	132	23.2949
AUGGUAAGAACAUUUUUAUUAUCC	chr3:142741240-142741587(+)$1	347	261	285	22.4861
CCAGGAUCCACAUAUAACCUCCAG	chr14:31609002-31609253(-)$1	251	132	156	23.8490
CCUGUUCUUGAAUACAUUGAUCUG	chr6:56963756-56964037(+)$1	281	117	141	21.2783
UGGGUUCUUGUUUUUUAUUACCCA	chrX:70793369-70793579(+)$1	210	75	99	21.7456
AUGUCAGAGGGACUGAGUGACAUG	chr2:242440811-242441078(-)$1	267	240	264	20.8833
AUGGCUGAUACUGCUGAUGCCAUU	chr2:74597657-74598006(-)$1	349	99	123	22.5352
CCGGCCAGAGUUUCCAGGGGCCUC	chr20:57275973-57276257(+)$1	284	14	38	22.8717
UUGUGGAAGAGGUGAGUACCAGGG	chr2:27604908-27605157(-)$1	249	154	178	23.6180
CUCUUCAGUGAAUGAAAAGAAGAG	chr17:57812605-57812922(+)$1	317	97	121	23.2949
CUCGGUUAAGGGAAAGCGCCGAGA	chr15:44085120-44085347(+)$1	227	104	128	20.8819
CUCUCAUUUCCCAUUAAGUCUGAG	chr14:23527905-23528152(-)$1	247	2	26	22.1100
UUUUGUCUCCUCUUAAACUGCCGU	chr2:233659474-233659754(+)$1	280	200	224	22.8776
AGUGAAAACAAAGUGGAAAAUUUG	chr4:39310288-39310587(-)$1	299	175	199	21.5979
GAGCGACAAGAACACCAACAUCGC	chr6:7565584-7565802(+)$1	218	123	147	21.8966
UACAGGCAUCUUCUUCUCAUCUGG	chr7:1024495-1024740(+)$1	245	85	109	22.6734
UCAGCCUCCAUUGAUCAACGGCUG	chr3:49052441-49052690(+)$1	249	94	118	22.8696
GAAAUGGCCAAACAGAAAGCAGCU	chr2:232325141-232325358(-)$1	217	118	142	22.4387
GCAGGUAAAAAUCAAGGUGACCCC	chr2:232327810-232328116(-)$1	306	89	113	22.6211
AAUCAUUAAACAGGAAGAAAGUGU	chr12:6692356-6692593(-)$1	237	72	96	19.6763
UUACUAAUUAUAGCAAAUGUCAUG	chr17:62500002-62500333(-)$1	331	86	110	20.6592
GAGCAAUGUUUGUAAUGAAUUGUU	chr14:34985503-34985779(-)$1	276	13	37	22.0509
UGCUGUAAUUAAUCAAAGUAGGCA	chr7:155493467-155493740(+)$1	273	231	255	20.4084
GCGUUCGAGGACGAGAUGAGCGGC	chr2:54856268-54856503(+)$1	235	46	70	21.9174
AACAGACCCCAACAGUACUUUGUA	chr2:201722593-201722832(-)$1	239	116	140	22.8794

#DB
((((.(..............))))	chr20:40117041-40117299(-)$1	1	154	178	21.8886
.((((..............)))).	chr20:62612520-62612769(+)$1	1	79	103	19.8954
.(((((...........)))))..	chr12:26875295-26875533(-)$1	1	69	93	21.1501
((((((............))))))	chr19:16976120-16976421(+)$1	1	178	202	23.2949
((.(((..............))).	chr2:242195515-242195762(-)$1	1	188	212	22.3148
(((.((............)).)))	chr15:63352965-63353251(+)$1	1	66	90	22.3639
(((((.............))))).	chr17:61875296-61875571(+)$1	1	222	246	21.9813
((((((...........)))))).	chr15:44085081-44085319(+)$1	1	143	167	20.8819
((.(((............)))(((	chr14:23944336-23944625(+)$1	1	22	46	21.6928
(.(((((...........))))).	chr20:17640751-17640981(-)$1	1	162	186	21.3473
(..(((.............)))..	chr3:38167551-38167847(-)$1	1	203	227	23.5247
((.(((............))).))	chr6:131958273-131958515(+)$1	1	95	119	23.7369
((((((............))))))	chr12:26839317-26839555(-)$1	1	203	227	23.1543
((((((...........)))))((	chr17:7476055-7476282(+)$1	1	17	41	20.8420
((((((..............))))	chr1:46079677-46079940(+)$1	1	91	115	22.2665
((((((.............)))))	chr2:188397942-188398219(+)$1	1	212	236	23.4573
(((.(((...........))).))	chr16:67174370-67174622(+)$1	1	19	43	22.0906
((((((............))))))	chr16:70711599-70711852(-)$1	1	192	216	23.2949
((..((.............))..)	chr6:155578818-155579074(-)$1	1	76	100	22.4387
..(((.............)))(((	chr2:54785555-54785799(+)$1	1	89	113	21.2666
((((..............)))).)	chr8:11660258-11660542(+)$1	1	256	280	20.9100
(((.(((...........)))...	chr2:102476007-102476261(+)$1	1	151	175	20.3407
((((((...........)))))).	chr11:821457-821734(+)$1	1	178	202	20.8819
((.(((...........)))...)	chr22:36684234-36684480(-)$1	1	19	43	22.5638
(((((.............)))).)	chr22:38016144-38016407(+)$1	1	181	205	22.0155
....((............))...)	chr6:31636907-31637191(+)$1	1	53	77	21.9638
(((................))).)	chr12:58112693-58112976(+)$1	1	159	183	20.3803
.((((..............)))).	chr6:2248968-2249270(+)$1	1	56	80	19.8954
((((((...........)))))))	chr7:99697544-99697806(-)$1	1	163	187	20.8833
...(((.............)))..	chr3:49052280-49052547(+)$1	1	219	243	23.6405
.(((((...........)))))((	chr20:34294941-34295143(-)$1	1	65	89	20.7340
...((.............))...)	chr12:111908263-111908623(-)$1	1	207	231	20.6276
(((((................)))	chr2:102472476-102472699(+)$1	1	37	61	20.1293
(((((((...........))).))	chr2:207025972-207026199(+)$1	1	73	97	21.9940
((((................))))	chr6:144863832-144864075(+)$1	1	40	64	20.4084
((((((..............))))	chr16:2812949-2813209(+)$1	1	89	113	21.7896
((((((...........)))))).	chr9:140347382-140347615(-)$1	1	149	173	20.8819
((((((............).))))	chr4:187630145-187630398(-)$1	1	152	176	23.1214
.((((..............)))).	chr17:80050472-80050685(-)$1	1	111	135	19.8954
((((((............))))))	chr11:129992176-129992401(+)$1	1	108	132	23.2949
(((((((...........))).))	chr3:142741240-142741587(+)$1	1	261	285	22.4861
((.(((.............))).)	chr14:31609002-31609253(-)$1	1	132	156	23.8490
((.(.((...........)).).)	chr6:56963756-56964037(+)$1	1	117	141	21.2783
(((((..............)))))	chrX:70793369-70793579(+)$1	1	75	99	21.7456
((((((...........)))))))	chr2:242440811-242441078(-)$1	1	240	264	20.8833
(((((.............))))))	chr2:74597657-74598006(-)$1	1	99	123	22.5352
..((((............)))).)	chr20:57275973-57276257(+)$1	1	14	38	22.8717
((.(((............))).))	chr2:27604908-27605157(-)$1	1	154	178	23.6180
((((((............))))))	chr17:57812605-57812922(+)$1	1	97	121	23.2949
((((((...........)))))).	chr15:44085120-44085347(+)$1	1	104	128	20.8819
((((((..............))))	chr14:23527905-23528152(-)$1	1	2	26	22.1100
(...((.............))...	chr2:233659474-233659754(+)$1	1	200	224	22.8776
((((((..............))))	chr4:39310288-39310587(-)$1	1	175	199	21.5979
.(((((..............))))	chr6:7565584-7565802(+)$1	1	123	147	21.8966
(.((((.............)))))	chr7:1024495-1024740(+)$1	1	85	109	22.6734
..((((.............)))))	chr3:49052441-49052690(+)$1	1	94	118	22.8696
((..((.............))..)	chr2:232325141-232325358(-)$1	1	118	142	22.4387
)).(((.............)))((	chr2:232327810-232328116(-)$1	1	89	113	22.6211
..((((................))	chr12:6692356-6692593(-)$1	1	72	96	19.6763
(.((..............)).)))	chr17:62500002-62500333(-)$1	1	86	110	20.6592
(((((((...........))))))	chr14:34985503-34985779(-)$1	1	13	37	22.0509
((((................))))	chr7:155493467-155493740(+)$1	1	231	255	20.4084
.(((((...........))))).)	chr2:54856268-54856503(+)$1	1	46	70	21.9174
.(((((............))))).	chr2:201722593-201722832(-)$1	1	116	140	22.8794

#PSSM
f : 0.21	d : 0.14	g : 0.12	: : 0.07	e : 0.06	c : 0.06	= : 0.06	! : 0.04	[ : 0.04	% : 0.03	i : 0.03	G : 0.01	E : 0.01	h : 0.01	b : 0.01	$ : 0.01	" : 0.01	
d : 0.18	f : 0.18	e : 0.17	g : 0.12	! : 0.06	[ : 0.04	c : 0.04	= : 0.04	" : 0.03	G : 0.01	i : 0.01	: : 0.01	h : 0.01	$ : 0.01	% : 0.01	
e : 0.18	d : 0.18	f : 0.17	g : 0.10	[ : 0.09	! : 0.04	: : 0.03	= : 0.03	c : 0.03	" : 0.03	i : 0.01	h : 0.01	$ : 0.01	% : 0.01	b : 0.01	
e : 0.18	f : 0.17	d : 0.15	c : 0.15	g : 0.10	[ : 0.04	= : 0.03	! : 0.03	b : 0.03	i : 0.01	$ : 0.01	y : 0.01	a : 0.01	" : 0.01	
c : 0.21	f : 0.17	e : 0.14	d : 0.12	g : 0.09	b : 0.09	y : 0.04	[ : 0.03	= : 0.03	w : 0.03	i : 0.01	
c : 0.20	e : 0.12	f : 0.10	w : 0.09	g : 0.09	b : 0.09	v : 0.07	y : 0.06	d : 0.06	a : 0.03	= : 0.03	i : 0.01	
v : 0.23	w : 0.20	u : 0.20	t : 0.17	y : 0.07	c : 0.06	e : 0.01	b : 0.01	= : 0.01	
t : 0.28	v : 0.23	w : 0.20	u : 0.20	y : 0.07	
t : 0.28	v : 0.23	w : 0.20	u : 0.20	y : 0.07	
t : 0.28	v : 0.23	w : 0.20	u : 0.20	y : 0.07	
t : 0.28	v : 0.23	w : 0.20	u : 0.20	y : 0.07	
t : 0.28	v : 0.23	w : 0.20	u : 0.20	y : 0.07	
t : 0.28	v : 0.23	w : 0.20	u : 0.20	y : 0.07	
t : 0.28	v : 0.23	w : 0.20	u : 0.20	y : 0.07	
t : 0.28	v : 0.23	w : 0.20	u : 0.20	y : 0.07	
t : 0.28	v : 0.23	w : 0.20	u : 0.20	y : 0.07	
t : 0.28	v : 0.23	w : 0.20	u : 0.20	y : 0.07	
v : 0.23	w : 0.20	u : 0.20	t : 0.10	f : 0.09	y : 0.07	e : 0.06	c : 0.01	
w : 0.17	v : 0.15	c : 0.14	e : 0.10	f : 0.10	b : 0.07	y : 0.07	g : 0.06	d : 0.04	i : 0.01	a : 0.01	= : 0.01	
c : 0.21	d : 0.12	b : 0.12	f : 0.12	w : 0.10	e : 0.10	g : 0.07	y : 0.06	i : 0.01	] : 0.01	= : 0.01	
c : 0.21	e : 0.17	f : 0.15	d : 0.12	g : 0.09	] : 0.04	b : 0.04	3 : 0.04	= : 0.03	y : 0.03	a : 0.01	i : 0.01	
e : 0.21	f : 0.17	d : 0.14	g : 0.09	c : 0.09	] : 0.07	3 : 0.06	i : 0.03	= : 0.03	2 : 0.03	6 : 0.01	a : 0.01	y : 0.01	
f : 0.18	e : 0.15	d : 0.15	g : 0.10	] : 0.10	3 : 0.06	c : 0.04	2 : 0.04	= : 0.04	4 : 0.03	i : 0.03	6 : 0.01	
d : 0.23	e : 0.12	: : 0.10	g : 0.10	f : 0.09	c : 0.06	2 : 0.04	= : 0.04	4 : 0.03	i : 0.03	D : 0.03	] : 0.01	5 : 0.01	6 : 0.01	b : 0.01	3 : 0.01	

#score	1399.3586028200211
#seq	64
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_UTR_m1_run1.txt

#BEAR
gg!!eeeeevvvvvvvvvvvvveeeee333ggg	chrX:102632757-102632989(+)$1	232	68	101	24.3612
hh[ffffffvvvvvvvvvvvvvffffffhhhhh	chr11:27387600-27387910(-)$1	310	146	179	21.7510
ggga^^^^^^^^^^^^^^^^^^^^^a]gggggg	chr12:104341508-104341728(+)$1	220	26	59	20.6947
eee[eeeeettttttttttteeeee22eeeeeb	chr20:48740686-48740938(-)$1	252	24	57	20.5924
dd^^^^^^^^^^^^^^^^^^^^dddd]ccc]ee	chr16:69151875-69152131(-)$1	256	44	77	19.4652
[dddd[cccwwwwwwwwwwwwwwccc]dddd]c	chrX:16862871-16863172(-)$1	301	87	120	23.2436
c"""ddddwwwwwwwwwwwwwwdddd4444ccc	chr14:101201201-101201425(+)$1	224	65	98	23.8510
^^^^^^^^^^^^^^^^^^^^^ccciiiiiiiii	chr14:21168086-21168336(+)$1	250	25	58	20.1958
ccgggggggxxxxxxxxxxxxxxxggggggg22	chr2:201342799-201343144(+)$1	345	293	326	21.2094
eee!!cccxxxxxxxxxxxxxxxccc22eeeee	chr18:9954490-9954759(+)$1	269	42	75	21.0568
dd!!eeeeeuuuuuuuuuuuueeeeedddd22g	chr1:33789725-33789999(-)$1	274	15	48	23.0952
$$$$$ddddvvvvvvvvvvvvvdddd4444bb2	chr12:56510333-56510543(+)$1	210	38	71	22.1907
eeee[eeeeettttttttttteeeee]eeeee2	chr17:40930996-40931278(+)$1	282	150	183	20.9690
iiiiiiiwwwwwwwwwwwwwwiiiiiiiiiccc	chr14:39819614-39819905(+)$1	291	217	250	24.4911
bb[bbyyyyyyyyyyyyyyyybb]bb]a]ffff	chr14:76117416-76117667(-)$1	251	134	167	21.4413
c[bbddddwwwwwwwwwwwwwwdddd]bbccc]	chr17:4636856-4637100(-)$1	244	59	92	22.6942
ffff!!cccuuuuuuuuuuuuccc22ffffffc	chr3:126261625-126261878(+)$1	253	199	232	23.6818
dd!!eeeeettttttttttteeeee333dddd3	chr6:33267551-33267850(-)$1	299	190	223	21.4938
=========uuuuuuuuuuuu==========a]	chr17:7215408-7215642(+)$1	234	191	224	26.3044
=========yyyyyyyyyyyyyyyy========	chr16:74486532-74486786(-)$1	254	56	89	25.2308
gggg^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr20:60884049-60884309(-)$1	260	183	216	20.3390
f"""ccc[awwwwwwwwwwwwwwa]ccc4444f	chr1:55530034-55530256(+)$1	222	107	140	24.3220
=========xxxxxxxxxxxxxxx=========	chr2:178083919-178084142(+)$1	223	16	49	23.1903
hdddd[bbyyyyyyyyyyyyyyyybb]dddd]h	chr18:77662369-77662646(-)$1	277	123	156	21.8337
=====[cccvvvvvvvvvvvvvccc]=======	chr2:97525535-97525800(-)$1	265	178	211	25.9622
gggggggwwwwwwwwwwwwwwggggggg:::ff	chr16:337412-337672(-)$1	260	177	210	20.3751
gggggyyyyyyyyyyyyyyyygggggggfffff	chr20:36033544-36033821(+)$1	277	82	115	23.0930
eee[ddddwwwwwwwwwwwwwwdddd]eeeee4	chr17:61685271-61685578(+)$1	307	129	162	23.0350
e[ddddyyyyyyyyyyyyyyyydddd]eeeee]	chr19:46030012-46030249(+)$1	237	32	65	22.9704
==========ttttttttttt==========::	chr12:56119247-56119501(-)$1	254	181	214	21.6768
++++ddddvvvvvvvvvvvvvdddd333bbbb=	chr3:184052904-184053178(+)$1	274	231	264	20.2217
eeee!!cccuuuuuuuuuuuuccc22eeeee33	chr2:220084434-220084715(-)$1	281	33	66	24.0439
hh[ffffffvvvvvvvvvvvvvffffffhhhhh	chr11:27387710-27387973(-)$1	263	209	242	21.7510
fff[eeeeeuuuuuuuuuuuueeeee]ffffff	chr8:17721953-17722199(-)$1	246	139	172	23.4317
=========wwwwwwwwwwwwww==========	chr6:150132330-150132589(+)$1	259	153	186	25.9469
fffff[bbvvvvvvvvvvvvvbb333fffffff	chr1:29652695-29652997(+)$1	302	31	64	22.1466
hhhhhyyyyyyyyyyyyyyyyhhhhhhhh4444	chr8:63927569-63927826(-)$1	257	80	113	20.7493
=========yyyyyyyyyyyyyyyy========	chr6:31765184-31765525(-)$1	341	54	87	25.2308
^^^^^^^^^^^^^^^^^^^^^^^ccc]ccc333	chrX:153213067-153213319(-)$1	252	156	189	20.3636
"""ffffffvvvvvvvvvvvvvffffffhhhhh	chr16:54317210-54317568(-)$1	358	22	55	22.1617
dddd[ddddtttttttttttdddd]dddd22cc	chr5:177022659-177022884(+)$1	225	31	64	19.5777
ccc^^^^^^^^^^^^^^^^^^^^ccc22eeeee	chr6:52128830-52129118(-)$1	288	28	61	19.6737
ff####cccuuuuuuuuuuuuccc333ffffff	chr2:54896353-54896624(+)$1	271	101	134	24.8050
cc^^^^^^^^^^^^^^^^^^^ccc4444ggggg	chr2:224831859-224832081(+)$1	222	47	80	19.9633
ccc[eeeeettttttttttteeeeeccc4444e	chr7:97920533-97920848(+)$1	315	222	255	21.5229
####fffffftttttttttttffffff4444ii	chr17:79780614-79780853(-)$1	239	45	78	21.0870
=========xxxxxxxxxxxxxxx=========	chr19:33791016-33791303(-)$1	287	104	137	23.1903
[iiiiiiiiitttttttttttiiiiiiiii22i	chr16:83845019-83845335(+)$1	316	235	268	22.5116
iiiiiiiiiwwwwwwwwwwwwwwiiiiiiiii2	chr4:155506410-155506669(-)$1	259	173	206	25.0203
cgggggggwwwwwwwwwwwwwwgggggggccc[	chr12:124809030-124809328(-)$1	298	133	166	24.1707
ff"""eeeeettttttttttteeeeeffffffe	chr5:150404927-150405151(+)$1	224	67	100	21.1624
##ggggggguuuuuuuuuuuuggggggg4444b	chr1:212534313-212534579(+)$1	266	146	179	24.2701
ccgggggggxxxxxxxxxxxxxxxggggggg]c	chr14:95553825-95554110(-)$1	285	61	94	21.5251
cc^^^^^^^^^^^^^^^^^^^^ccciiiiiiii	chr1:226548729-226549083(-)$1	354	93	126	20.9294
"ccc[cccvvvvvvvvvvvvvccc]ccc333cc	chr16:8986704-8986951(-)$1	247	109	142	24.4047
eeebb[cccuuuuuuuuuuuuccc]bb4444ee	chr5:150176013-150176267(+)$1	254	184	217	23.3667
"""gggggggtttttttttttggggggg]ccc]	chrX:132669795-132670006(-)$1	211	102	135	22.2723
iiiiiiiiitttttttttttiiiiiiiii:ggg	chr6:34741282-34741578(+)$1	296	143	176	21.5983
hhhhhhhwwwwwwwwwwwwwwhhhhhhhhdddd	chr11:9610912-9611213(+)$1	301	2	35	19.6971
h####dddduuuuuuuuuuuudddd22hhhhhh	chr10:70744602-70744850(+)$1	248	148	181	22.9034
iiii^^^^^^^^^^^^^^^^^^^^^^iiiiiii	chr16:31500779-31501066(-)$1	287	187	220	20.9523
iiiiiiiiiwwwwwwwwwwwwwwiiiiiiiii:	chr16:4561466-4561741(-)$1	275	151	184	24.1086
===^^^^^^^^^^^^^^^^^^^^^=========	chr13:96446835-96447098(+)$1	263	24	57	21.7126

#otherMatches

#Seq PSSM
UGCCUUUACUGAUCCGUUUGCUGUGAACCCUAU	chrX:102632757-102632989(+)$1	232	68	101	24.3612
UUGUAAGGCCAACUAUUUACAAGUUUUAAAAAU	chr11:27387600-27387910(-)$1	310	146	179	21.7510
CCCCUUCUCCCCUGCACUGUAAAAUGUGGGAUU	chr12:104341508-104341728(+)$1	220	26	59	20.6947
UGGAAGAGGACACGGUAUCCCCUCUGGCCAGAG	chr20:48740686-48740938(-)$1	252	24	57	20.5924
CAAAGAACCUCAAAAUUUAAACUGAUGUGGAUG	chr16:69151875-69152131(-)$1	256	44	77	19.4652
GCAUUGUAUAGUAGGAAAUGUAAGUGGGGUGGC	chrX:16862871-16863172(-)$1	301	87	120	23.2436
AGUUCCGCAGAGCUUACUAUACGCGGUCUGUCC	chr14:101201201-101201425(+)$1	224	65	98	23.8510
UAUUAAAUACAUUGCACCAAAGAGAUAUGGAGA	chr14:21168086-21168336(+)$1	250	25	58	20.1958
UAGAGAGUUAAUGUUACAAAAAAGAAUUCUUAA	chr2:201342799-201343144(+)$1	345	293	326	21.2094
AAAUGUUAUUUUAAUAAUCCCUUUAAAUUUUAU	chr18:9954490-9954759(+)$1	269	42	75	21.0568
AGCCAGGGUUCUCCCCCCUACACCCUCUGCAGG	chr1:33789725-33789999(-)$1	274	15	48	23.0952
ACACCCGGCGCUCCAUUAAAUAGCCGUAGACGG	chr12:56510333-56510543(+)$1	210	38	71	22.1907
CAGACCCAGUGUCCCCCAAAGACUGGAUCUGUG	chr17:40930996-40931278(+)$1	282	150	183	20.9690
AUAAAUUAUAGUUGAUUUAAAGAUUUGUUUGGC	chr14:39819614-39819905(+)$1	291	217	250	24.4911
CAUGUGAACUAUGAAACUUAAACCUGCUGCCCA	chr14:76117416-76117667(-)$1	251	134	167	21.4413
UCUCCUGCAUCCUCCUGUACCCGCAGCGAAGGC	chr17:4636856-4637100(-)$1	244	59	92	22.6942
UCCUCCCCACCUCGCCCACCCUGGCAAGGACAG	chr3:126261625-126261878(+)$1	253	199	232	23.6818
ccacugcuguaaccccgcgccggcauagggacc	chr6:33267551-33267850(-)$1	299	190	223	21.4938
CUCUCCCCAAACCCCUUUAGAUggggagggaag	chr17:7215408-7215642(+)$1	234	191	224	26.3044
UUAAGAAAACCACCaaaaaaaaaaauuuuuuua	chr16:74486532-74486786(-)$1	254	56	89	25.2308
GUGUAACCGAAUGAAUGUUGACUUAAAUACGGA	chr20:60884049-60884309(-)$1	260	183	216	20.3390
cccggcugggcuccucAUUUUUACGGGUAACAG	chr1:55530034-55530256(+)$1	222	107	140	24.3220
AUGUGCAUACUUCUUUUAAAAUACUAUGUAUAU	chr2:178083919-178084142(+)$1	223	16	49	23.1903
GCGGUAAUUGCCUCACAUUAAACUGUCGCCGAC	chr18:77662369-77662646(-)$1	277	123	156	21.8337
GGGUGGGCCUGCUGUGGACAAUGGCAUACUCUC	chr2:97525535-97525800(-)$1	265	178	211	25.9622
AUUAUCUUUUCAAAGGUACUUGGAUAAUAAUGA	chr16:337412-337672(-)$1	260	177	210	20.3751
ACUGUCCUUUUUUUUUUUUUAACAGUGUUUUGU	chr20:36033544-36033821(+)$1	277	82	115	23.0930
UGGCAGCCCAUUCCAGCACACAGGCUUCUGCAG	chr17:61685271-61685578(+)$1	307	129	162	23.0350
AUGCUGUAACUUUUUGGAACCUCAGUUUUUUGA	chr19:46030012-46030249(+)$1	237	32	65	22.9704
AUCUGGGGGAGUGGAAUAGUAUCCUCCAGGUUU	chr12:56119247-56119501(-)$1	254	181	214	21.6768
AAUUAAGCUCACUGCCUUUCUGCUUUAUGCCCU	chr3:184052904-184053178(+)$1	274	231	264	20.2217
GCAGCCGGCUCACCUCUCUCCGCUUCUUGCACA	chr2:220084434-220084715(-)$1	281	33	66	24.0439
UUGUAAGGCCAACUAUUUACAAGUUUUAAAAAU	chr11:27387710-27387973(-)$1	263	209	242	21.7510
UUAAAGUGAUUUGAAAAAUACUCAUUCUGAACA	chr8:17721953-17722199(-)$1	246	139	172	23.4317
GUAAGCUGUGUCCUAGUUCUUGAACAGUUUAUG	chr6:150132330-150132589(+)$1	259	153	186	25.9469
UGCAGCGCCCUCCUCCCCACUGCCCCCUGCAGC	chr1:29652695-29652997(+)$1	302	31	64	22.1466
AUUUAUAUAACAUUAGAUAAUUAAAUAGUGAGA	chr8:63927569-63927826(-)$1	257	80	113	20.7493
AGAACCCCUAACCCCCAAUACUUGAAGGGGUUU	chr6:31765184-31765525(-)$1	341	54	87	25.2308
UGUUUUACCCCAUCCCUUCUCUCGCGCGCCUAU	chrX:153213067-153213319(-)$1	252	156	189	20.3636
AAUUGUAUAAAAAAAAUCGCUCUGUAUAGUUAC	chr16:54317210-54317568(-)$1	358	22	55	22.1617
CAGUGUUACUGAUCAGGGAUGUGAGGCUGCUGU	chr5:177022659-177022884(+)$1	225	31	64	19.5777
GUAAAUAACAUAUGACUUCUGAGUACUUUUGGG	chr6:52128830-52129118(-)$1	288	28	61	19.6737
UAAUAAACCCUUUAAAUCAUUGGUAAGUGUACA	chr2:54896353-54896624(+)$1	271	101	134	24.8050
AGUGUUUUUGGUUUUGUUUUUCUGAAAUCUUGG	chr2:224831859-224832081(+)$1	222	47	80	19.9633
AAGCACUGCUUUUAUUUUUUGCAGUCUUCAAUU	chr7:97920533-97920848(+)$1	315	222	255	21.5229
ACCCUCCUGCCCCUGGCCACUGCAGGAUCAGGA	chr17:79780614-79780853(-)$1	239	45	78	21.0870
UGUUUUGGUUUUGCUCGGAUACUUGCCAAAAUG	chr19:33791016-33791303(-)$1	287	104	137	23.1903
CUUUGGCGGUUCUUGCAUAACAUUGUCAGAUUU	chr16:83845019-83845335(+)$1	316	235	268	22.5116
cucuguauucccaaaugccuaacaguacagagc	chr4:155506410-155506669(-)$1	259	173	206	25.0203
GCUUUUGAUCUCUGCUUACCGUUCAAGAGGCGU	chr12:124809030-124809328(-)$1	298	133	166	24.1707
GCAAAUACGUCCUCUUUGUCAACGUGGCCAGCU	chr5:150404927-150405151(+)$1	224	67	100	21.1624
CUGUAUAUUUUUCCCUUUUAUAAUGUGCUUUUC	chr1:212534313-212534579(+)$1	266	146	179	24.2701
AUUUGuaaauuuuuuaaaauuucuuuuauaaua	chr14:95553825-95554110(-)$1	285	61	94	21.5251
CCUUGUUUUGUGUUGUGUCUGUGGGGAGGGGUU	chr1:226548729-226549083(-)$1	354	93	126	20.9294
CAGCCCCGUUUCCUUUUAUUUUGGAGCUAAUGC	chr16:8986704-8986951(-)$1	247	109	142	24.4047
GCACAGAUAUCGGGAUAUUAUUGUGUGAAAAUG	chr5:150176013-150176267(+)$1	254	184	217	23.3667
UGUGCCAAAUUAUUCUCCUAUGUUUGGCUGCUA	chrX:132669795-132670006(-)$1	211	102	135	22.2723
GAGUUUUCUAAACAGCAUAAGGAAGACUUGCUC	chr6:34741282-34741578(+)$1	296	143	176	21.5983
UUACUGGUUUUGUAACUUGUUCUGGUAAUGUCC	chr11:9610912-9611213(+)$1	301	2	35	19.6971
UAAAUGUUUUUACUAUAAAAUGAGCUAAUGUAU	chr10:70744602-70744850(+)$1	248	148	181	22.9034
gcuuuaaucaccaacccaucaacaucaagccuc	chr16:31500779-31501066(-)$1	287	187	220	20.9523
UGUGCCUGCUCACACCUGCUCCUGCAGGCACAC	chr16:4561466-4561741(-)$1	275	151	184	24.1086
UUGGGGGUUUUUUUUGUUUGUUUACAGAUGAUC	chr13:96446835-96447098(+)$1	263	24	57	21.7126

#DB
((..(((((.............)))))...)))	chrX:102632757-102632989(+)$1	1	68	101	24.3612
((.((((((.............)))))))))))	chr11:27387600-27387910(-)$1	1	146	179	21.7510
((((.....................).))))))	chr12:104341508-104341728(+)$1	1	26	59	20.6947
(((.(((((...........)))))..)))))(	chr20:48740686-48740938(-)$1	1	24	57	20.5924
((....................)))).))).))	chr16:69151875-69152131(-)$1	1	44	77	19.4652
.((((.(((..............))).)))).)	chrX:16862871-16863172(-)$1	1	87	120	23.2436
(...((((..............))))....)))	chr14:101201201-101201425(+)$1	1	65	98	23.8510
.....................))))))))))))	chr14:21168086-21168336(+)$1	1	25	58	20.1958
(((((((((...............)))))))..	chr2:201342799-201343144(+)$1	1	293	326	21.2094
(((..(((...............)))..)))))	chr18:9954490-9954759(+)$1	1	42	75	21.0568
((..(((((............)))))))))..)	chr1:33789725-33789999(-)$1	1	15	48	23.0952
.....((((.............))))....)).	chr12:56510333-56510543(+)$1	1	38	71	22.1907
((((.(((((...........))))).))))).	chr17:40930996-40931278(+)$1	1	150	183	20.9690
(((((((..............))))))))))))	chr14:39819614-39819905(+)$1	1	217	250	24.4911
((.((................)).)).).))))	chr14:76117416-76117667(-)$1	1	134	167	21.4413
(.((((((..............)))).))))).	chr17:4636856-4637100(-)$1	1	59	92	22.6942
((((..(((............)))..)))))))	chr3:126261625-126261878(+)$1	1	199	232	23.6818
((..(((((...........)))))...)))).	chr6:33267551-33267850(-)$1	1	190	223	21.4938
(((((((((............))))))))))).	chr17:7215408-7215642(+)$1	1	191	224	26.3044
(((((((((................))))))))	chr16:74486532-74486786(-)$1	1	56	89	25.2308
((((......................)))))))	chr20:60884049-60884309(-)$1	1	183	216	20.3390
(...(((.(..............).)))....)	chr1:55530034-55530256(+)$1	1	107	140	24.3220
(((((((((...............)))))))))	chr2:178083919-178084142(+)$1	1	16	49	23.1903
(((((.((................)).)))).)	chr18:77662369-77662646(-)$1	1	123	156	21.8337
(((((.(((.............))).)))))))	chr2:97525535-97525800(-)$1	1	178	211	25.9622
(((((((..............)))))))...((	chr16:337412-337672(-)$1	1	177	210	20.3751
(((((................)))))))(((((	chr20:36033544-36033821(+)$1	1	82	115	23.0930
(((.((((..............)))).))))).	chr17:61685271-61685578(+)$1	1	129	162	23.0350
(.((((................)))).))))).	chr19:46030012-46030249(+)$1	1	32	65	22.9704
((((((((((...........))))))))))..	chr12:56119247-56119501(-)$1	1	181	214	21.6768
....((((.............))))...)))))	chr3:184052904-184053178(+)$1	1	231	264	20.2217
((((..(((............)))..)))))..	chr2:220084434-220084715(-)$1	1	33	66	24.0439
((.((((((.............)))))))))))	chr11:27387710-27387973(-)$1	1	209	242	21.7510
(((.(((((............))))).))))))	chr8:17721953-17722199(-)$1	1	139	172	23.4317
(((((((((..............))))))))))	chr6:150132330-150132589(+)$1	1	153	186	25.9469
(((((.((.............))...)))))))	chr1:29652695-29652997(+)$1	1	31	64	22.1466
(((((................))))))))....	chr8:63927569-63927826(-)$1	1	80	113	20.7493
(((((((((................))))))))	chr6:31765184-31765525(-)$1	1	54	87	25.2308
.......................))).)))...	chrX:153213067-153213319(-)$1	1	156	189	20.3636
...((((((.............)))))))))))	chr16:54317210-54317568(-)$1	1	22	55	22.1617
((((.((((...........)))).))))..))	chr5:177022659-177022884(+)$1	1	31	64	19.5777
(((....................)))..)))))	chr6:52128830-52129118(-)$1	1	28	61	19.6737
((....(((............)))...))))))	chr2:54896353-54896624(+)$1	1	101	134	24.8050
((...................)))....)))))	chr2:224831859-224832081(+)$1	1	47	80	19.9633
(((.(((((...........))))))))....)	chr7:97920533-97920848(+)$1	1	222	255	21.5229
....((((((...........))))))....))	chr17:79780614-79780853(-)$1	1	45	78	21.0870
(((((((((...............)))))))))	chr19:33791016-33791303(-)$1	1	104	137	23.1903
.(((((((((...........)))))))))..)	chr16:83845019-83845335(+)$1	1	235	268	22.5116
(((((((((..............))))))))).	chr4:155506410-155506669(-)$1	1	173	206	25.0203
)(((((((..............)))))))(((.	chr12:124809030-124809328(-)$1	1	133	166	24.1707
((...(((((...........))))))))))))	chr5:150404927-150405151(+)$1	1	67	100	21.1624
..(((((((............)))))))....)	chr1:212534313-212534579(+)$1	1	146	179	24.2701
(((((((((...............))))))).)	chr14:95553825-95554110(-)$1	1	61	94	21.5251
((....................)))))))))))	chr1:226548729-226549083(-)$1	1	93	126	20.9294
.(((.(((.............))).)))...))	chr16:8986704-8986951(-)$1	1	109	142	24.4047
(((((.(((............))).))....))	chr5:150176013-150176267(+)$1	1	184	217	23.3667
...(((((((...........))))))).))).	chrX:132669795-132670006(-)$1	1	102	135	22.2723
(((((((((...........))))))))).(((	chr6:34741282-34741578(+)$1	1	143	176	21.5983
(((((((..............))))))))((((	chr11:9610912-9611213(+)$1	1	2	35	19.6971
(....((((............))))..))))))	chr10:70744602-70744850(+)$1	1	148	181	22.9034
((((......................)))))))	chr16:31500779-31501066(-)$1	1	187	220	20.9523
(((((((((..............))))))))).	chr16:4561466-4561741(-)$1	1	151	184	24.1086
(((.....................)))))))))	chr13:96446835-96447098(+)$1	1	24	57	21.7126

#PSSM
c : 0.14	= : 0.14	e : 0.11	h : 0.09	f : 0.09	g : 0.07	i : 0.07	d : 0.06	" : 0.04	[ : 0.03	^ : 0.03	# : 0.03	$ : 0.01	b : 0.01	+ : 0.01	
= : 0.14	c : 0.11	g : 0.09	e : 0.09	d : 0.09	i : 0.09	f : 0.07	h : 0.06	" : 0.06	# : 0.04	^ : 0.03	[ : 0.03	$ : 0.01	b : 0.01	+ : 0.01	
= : 0.14	g : 0.12	e : 0.09	i : 0.09	^ : 0.07	" : 0.07	d : 0.06	! : 0.04	[ : 0.04	f : 0.04	c : 0.04	# : 0.04	h : 0.03	$ : 0.01	b : 0.01	+ : 0.01	
g : 0.12	= : 0.12	^ : 0.11	i : 0.09	f : 0.07	! : 0.06	[ : 0.06	d : 0.06	" : 0.04	b : 0.04	# : 0.04	e : 0.03	h : 0.03	a : 0.01	$ : 0.01	+ : 0.01	c : 0.01	
^ : 0.15	= : 0.12	d : 0.11	g : 0.11	e : 0.09	f : 0.07	i : 0.07	! : 0.04	[ : 0.04	b : 0.03	h : 0.03	# : 0.03	$ : 0.01	c : 0.01	" : 0.01	
^ : 0.15	e : 0.12	d : 0.12	= : 0.11	g : 0.09	[ : 0.07	i : 0.07	f : 0.06	c : 0.04	y : 0.04	! : 0.03	# : 0.01	h : 0.01	
^ : 0.15	c : 0.14	e : 0.12	d : 0.11	= : 0.11	g : 0.09	i : 0.07	f : 0.06	y : 0.06	b : 0.03	h : 0.01	
^ : 0.15	e : 0.12	c : 0.12	d : 0.11	= : 0.11	g : 0.07	f : 0.06	y : 0.06	i : 0.06	w : 0.04	b : 0.03	[ : 0.01	
^ : 0.15	e : 0.12	w : 0.11	= : 0.11	c : 0.09	y : 0.07	f : 0.06	g : 0.06	i : 0.06	d : 0.04	v : 0.04	x : 0.01	a : 0.01	
w : 0.19	^ : 0.15	v : 0.14	u : 0.14	y : 0.11	t : 0.07	x : 0.07	e : 0.03	= : 0.01	f : 0.01	i : 0.01	g : 0.01	
w : 0.19	t : 0.17	^ : 0.15	v : 0.14	u : 0.14	y : 0.11	x : 0.07	
w : 0.19	t : 0.17	^ : 0.15	v : 0.14	u : 0.14	y : 0.11	x : 0.07	
w : 0.19	t : 0.17	^ : 0.15	v : 0.14	u : 0.14	y : 0.11	x : 0.07	
w : 0.19	t : 0.17	^ : 0.15	v : 0.14	u : 0.14	y : 0.11	x : 0.07	
w : 0.19	t : 0.17	^ : 0.15	v : 0.14	u : 0.14	y : 0.11	x : 0.07	
w : 0.19	t : 0.17	^ : 0.15	v : 0.14	u : 0.14	y : 0.11	x : 0.07	
w : 0.19	t : 0.17	^ : 0.15	v : 0.14	u : 0.14	y : 0.11	x : 0.07	
w : 0.19	t : 0.17	^ : 0.15	v : 0.14	u : 0.14	y : 0.11	x : 0.07	
w : 0.19	t : 0.17	^ : 0.15	v : 0.14	u : 0.14	y : 0.11	x : 0.07	
w : 0.19	t : 0.17	^ : 0.15	v : 0.14	u : 0.14	y : 0.11	x : 0.07	
w : 0.19	^ : 0.15	v : 0.14	u : 0.14	y : 0.11	t : 0.09	x : 0.07	e : 0.04	d : 0.01	i : 0.01	
w : 0.14	^ : 0.12	e : 0.11	c : 0.11	v : 0.09	x : 0.07	y : 0.06	g : 0.06	i : 0.04	d : 0.04	b : 0.03	= : 0.03	h : 0.03	f : 0.01	
d : 0.14	c : 0.14	e : 0.12	^ : 0.09	w : 0.07	x : 0.07	g : 0.07	f : 0.06	i : 0.04	y : 0.04	b : 0.03	= : 0.03	h : 0.03	
c : 0.20	d : 0.14	e : 0.12	i : 0.07	g : 0.07	f : 0.06	^ : 0.06	x : 0.06	= : 0.04	y : 0.04	h : 0.03	] : 0.01	a : 0.01	3 : 0.01	
e : 0.12	d : 0.12	g : 0.11	c : 0.09	i : 0.09	= : 0.09	f : 0.06	] : 0.06	^ : 0.04	b : 0.03	2 : 0.03	y : 0.03	3 : 0.03	h : 0.03	4 : 0.01	
= : 0.12	d : 0.11	c : 0.11	i : 0.11	g : 0.11	e : 0.07	f : 0.06	2 : 0.06	3 : 0.06	b : 0.04	^ : 0.03	h : 0.03	a : 0.01	] : 0.01	4 : 0.01	
] : 0.17	= : 0.14	i : 0.12	g : 0.12	f : 0.11	2 : 0.06	4 : 0.04	3 : 0.04	c : 0.04	e : 0.03	d : 0.03	h : 0.03	b : 0.01	
g : 0.14	= : 0.14	f : 0.12	i : 0.12	e : 0.07	c : 0.07	4 : 0.07	d : 0.06	3 : 0.04	h : 0.04	2 : 0.03	a : 0.01	b : 0.01	
= : 0.14	i : 0.12	e : 0.11	4 : 0.11	h : 0.09	g : 0.09	f : 0.09	d : 0.07	3 : 0.03	c : 0.03	] : 0.03	b : 0.03	: : 0.01	
= : 0.14	4 : 0.12	e : 0.11	i : 0.11	f : 0.11	g : 0.07	c : 0.07	d : 0.07	h : 0.06	3 : 0.03	: : 0.03	b : 0.01	2 : 0.01	
= : 0.14	g : 0.11	e : 0.11	f : 0.11	4 : 0.09	c : 0.07	i : 0.07	h : 0.06	d : 0.06	2 : 0.04	b : 0.03	3 : 0.03	] : 0.01	: : 0.01	
e : 0.12	f : 0.12	c : 0.11	= : 0.11	i : 0.09	g : 0.07	h : 0.06	4 : 0.06	] : 0.04	2 : 0.04	b : 0.03	d : 0.03	3 : 0.03	a : 0.01	: : 0.01	
= : 0.12	c : 0.11	f : 0.11	g : 0.09	e : 0.09	h : 0.07	i : 0.07	2 : 0.06	] : 0.06	3 : 0.04	b : 0.03	4 : 0.03	: : 0.03	[ : 0.01	d : 0.01	

#score	1411.286487209789
#seq	63
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565RQI_SSB_transcript_m1_run1.txt

#BEAR
##eeeeea[ffffffmmmmffffff]a]eeee	chr9:35657873-35658105(-)$1	232	181	213	8.2154
ccdddd####ddddnnnnndddd4444dddd]	chr9:35657836-35658044(-)$1	208	172	204	16.7559
""eeeee!!ddddoooooodddd22eeeee44	chr11:10823017-10823246(-)$1	229	32	64	15.6246
[==========[ddddllldddd22=======	chr17:7480116-7480359(+)$1	243	64	96	13.0790
!!dddd!!ccccccnnnnnccc22ccc22ddd	chr17:73559195-73559408(+)$1	213	48	80	13.0050
b[dddd[a!!ddddnnnnndddd22a]dddd]	chr14:20811381-20811584(-)$1	203	142	174	16.7543
"""a[a[bb!!cccooooooccc]bb]a]a22	chr7:139025340-139025595(+)$1	255	56	88	11.1674
dd!!ccc"""ddddmmmmdddd]ccc22dddd	chr6:43752772-43753018(+)$1	246	41	73	11.1530
b[dddd[a!!ddddnnnnndddd22a]dddd]	chr14:20811375-20811581(-)$1	206	139	171	16.7543
"""ccc!!ccc[bbnnnnnbb]ccc22ccc33	chr21:47559794-47560051(-)$1	257	15	47	11.0208
[dddd$$$$$ddddnnnnndddd22ddddadd	chr9:35657822-35658024(-)$1	202	152	184	14.9258
b[dddd[a!!ddddnnnnndddd22a]dddd]	chr14:20811384-20811591(-)$1	207	149	181	16.7543
[==========[ddddllldddd22=======	chr17:7480112-7480316(+)$1	204	68	100	13.0790
::ggggggg[ddddnnnnndddd]ggggggg:	chr15:25330938-25331190(+)$1	252	55	87	11.2724
gggg"""ccc!!ddddllldddd333ccc22g	chr2:86276140-86276361(-)$1	221	71	103	12.0808
$$eeeee"""cccooooooccc333eeeeeee	chr16:71792279-71792484(-)$1	205	126	158	14.5272
b[eeeee!!bb[ddddllldddd]bbeeeee]	chr3:48642989-48643247(-)$1	258	24	56	12.6507
##bb"""ccc!!ddddllldddd22ccc333b	chr21:47558657-47558894(-)$1	237	93	125	11.7552
!!dddd!!ccccccnnnnnccc22ccc22ddd	chr17:73559158-73559395(+)$1	237	85	117	13.0050
"""ccc!!eeeeeannnnna]eeeee22ccc4	chr14:20811366-20811573(-)$1	207	33	65	11.2220
Ba[dddd####ddddllldddd4444dddd]a	chr21:47566716-47566975(-)$1	259	198	230	13.1202
##eeeee"""ddddnnnnndddd333eeeee2	chr3:48642228-48642517(-)$1	289	217	249	17.7894
ccdddd####ddddnnnnndddd4444dddd]	chr9:35657833-35658036(-)$1	203	164	196	16.7559
b[dddd[a!!ddddnnnnndddd22a]dddd]	chr14:20811373-20811575(-)$1	202	133	165	16.7543
fffff"""a[ddddoooooodddd]affffff	chr1:3689284-3689497(+)$1	213	107	139	11.8775
ccdddd####ddddnnnnndddd4444dddd]	chr9:35657824-35658033(-)$1	209	161	193	16.7559
#eeeee[bb[ddddnnnnndddd]bbeeeeee	chr17:8076801-8077006(-)$1	205	166	198	14.2765
b[dddd[a!!ddddnnnnndddd22a]dddd]	chr14:20811398-20811600(-)$1	202	158	190	16.7543
c[dddd####ddddnnnnndddd4444ddddc	chr17:73029900-73030181(+)$1	281	14	46	16.6187
DDeeeee####cccmmmmccceeeeeeeeeea	chr14:20811400-20811612(-)$1	212	54	86	10.1770
"""ddddgggggggnnnnnggggggg]dddd3	chr16:50604953-50605217(+)$1	264	150	182	11.7739
DDeeeee####cccmmmmccceeeeeeeeeea	chr14:20811417-20811624(-)$1	207	66	98	10.1770
DDeeeee####cccmmmmccceeeeeeeeeea	chr14:20811391-20811596(-)$1	205	38	70	10.1770
ddeeeee$$$$$ccclllccc]eeeee]dddd	chr16:28883235-28883471(+)$1	236	50	82	10.4832
gggg"""ccc!!ddddllldddd333ccc22g	chr2:86276172-86276383(-)$1	211	93	125	12.0808
ddd!!accc[ddddnnnnndddd]ccc]a333	chr5:138066716-138067009(+)$1	293	165	197	13.7917
[eeeeeccc[ddddnnnnndddd22ccc]eee	chr17:76187174-76187455(+)$1	281	224	256	15.0199
bb!!eeeee"""bboooooobb333eeeee22	chr17:27049545-27049810(+)$1	265	76	108	10.8046
""eeeee!!ddddoooooodddd22eeeee44	chr11:10823046-10823253(-)$1	207	39	71	15.6246
[a[iiiiiiiiiooooooiiiiiiiii]aeee	chr16:28883206-28883435(+)$1	229	100	132	9.6424
!cccccc!!ddddoooooodddd333ccc]cc	chr16:50623237-50623460(+)$1	223	173	205	13.9092
eeee[ggggggg[annnnnagggggggeeeee	chr9:134281679-134281990(+)$1	311	169	201	10.8524
!!eeeee!!ffffffooooooffffff]eeee	chr16:50650818-50651099(+)$1	281	214	246	9.5817
[==========[ddddllldddd22=======	chr17:7480027-7480274(+)$1	247	153	185	13.0790
fffff"""a[ddddoooooodddd]affffff	chr1:3689252-3689484(+)$1	232	139	171	11.8775
eeeee$$$$$cccooooooccc4444eeeee]	chr1:173835343-173835586(-)$1	243	105	137	13.0789
DDeeeee####cccmmmmccceeeeeeeeeea	chr14:20811424-20811649(-)$1	225	91	123	10.1770
cc]ffffffddddooooooddddccc[eeeee	chr16:28883203-28883406(+)$1	203	101	133	10.7074
DDeeeee####cccmmmmccceeeeeeeeeea	chr14:20811412-20811617(-)$1	205	59	91	10.1770

#otherMatches

#Seq PSSM
GAGAGUGCCACGUGCAUACGCACGUAGACAUU	chr9:35657873-35658105(-)$1	232	181	213	8.2154
UCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGU	chr9:35657836-35658044(-)$1	208	172	204	16.7559
AGAUGAGGUACAUUUGCCUAUGUUACUUAUAU	chr11:10823017-10823246(-)$1	229	32	64	15.6246
UGCAGCCCUGGCAGUGUCCUACUUCCCAGGGC	chr17:7480116-7480359(+)$1	243	64	96	13.0790
CUUCCUCAGCAGCCAGGUAGGCAGUGCCCAGG	chr17:73559195-73559408(+)$1	213	48	80	13.0050
GGGGAGGUGAGUUCCCAGAGAACGGGGCUCCG	chr14:20811381-20811584(-)$1	203	142	174	16.7543
CAAAGAGGAAAAUAGUUGAAUAUGUUGUGUGA	chr7:139025340-139025595(+)$1	255	56	88	11.1674
CCCACUCAGAUCCUGACAGGGAAGAGGAGGAG	chr6:43752772-43753018(+)$1	246	41	73	11.1530
GGGGAGGUGAGUUCCCAGAGAACGGGGCUCCG	chr14:20811375-20811581(-)$1	206	139	171	16.7543
AAGGUCGACUUUUGAAAAACAUAAGGAGAUAU	chr21:47559794-47560051(-)$1	257	15	47	11.0208
UCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGU	chr9:35657822-35658024(-)$1	202	152	184	14.9258
GGGGAGGUGAGUUCCCAGAGAACGGGGCUCCG	chr14:20811384-20811591(-)$1	207	149	181	16.7543
UGCAGCCCUGGCAGUGUCCUACUUCCCAGGGC	chr17:7480112-7480316(+)$1	204	68	100	13.0790
UCAUUUCAUCGUCCAUUGAGGACAAUGAAGUU	chr15:25330938-25331190(+)$1	252	55	87	11.2724
GGCCCCAGGUAAGGAGGGACUUCGAGGCCGUG	chr2:86276140-86276361(-)$1	221	71	103	12.0808
CAUCGGCUAAGUGUCUUGUCACAAUGCUGACA	chr16:71792279-71792484(-)$1	205	126	158	14.5272
UUGGAGCAUCUGGCUUUCAAGGUGAGGCUCUU	chr3:48642989-48643247(-)$1	258	24	56	12.6507
AAGGACAGGUGAGCCUGGAGGGCCGGCCGCAC	chr21:47558657-47558894(-)$1	237	93	125	11.7552
CUUCCUCAGCAGCCAGGUAGGCAGUGCCCAGG	chr17:73559158-73559395(+)$1	237	85	117	13.0050
CACGAGCUGAGUGCGUCCUGUCACUCCACUCC	chr14:20811366-20811573(-)$1	207	33	65	11.2220
CGUGUUCUGAAUGGGUUUCCCAGAAUGAAUUC	chr21:47566716-47566975(-)$1	259	198	230	13.1202
UGGUCCUGCUGGGUGUUUAGCCUCUGAGGACA	chr3:48642228-48642517(-)$1	289	217	249	17.7894
UCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGU	chr9:35657833-35658036(-)$1	203	164	196	16.7559
GGGGAGGUGAGUUCCCAGAGAACGGGGCUCCG	chr14:20811373-20811575(-)$1	202	133	165	16.7543
GCCGCAGUGGGCAGGUGCGACUGUGCGCGGCC	chr1:3689284-3689497(+)$1	213	107	139	11.8775
UCCGCCAAGAAGCGUAUCCCGCUGAGCGGCGU	chr9:35657824-35658033(-)$1	209	161	193	16.7559
gaugcaugaaacgugauuaacgucucugcgua	chr17:8076801-8077006(-)$1	205	166	198	14.2765
GGGGAGGUGAGUUCCCAGAGAACGGGGCUCCG	chr14:20811398-20811600(-)$1	202	158	190	16.7543
CAUGGAUCGCGCCUCUGUCAGGCCUUCUCUAG	chr17:73029900-73030181(+)$1	281	14	46	16.6187
GAAGCUCAUCAGUGGGGCCACGAGCUGAGUGC	chr14:20811400-20811612(-)$1	212	54	86	10.1770
GCCUAGGGGGCUGCAGGUGGCAGCCCUCCUAU	chr16:50604953-50605217(+)$1	264	150	182	11.7739
GAAGCUCAUCAGUGGGGCCACGAGCUGAGUGC	chr14:20811417-20811624(-)$1	207	66	98	10.1770
GAAGCUCAUCAGUGGGGCCACGAGCUGAGUGC	chr14:20811391-20811596(-)$1	205	38	70	10.1770
ACUCCGGAAACAGCCACAGGUACCGGAGGUGU	chr16:28883235-28883471(+)$1	236	50	82	10.4832
GGCCCCAGGUAAGGAGGGACUUCGAGGCCGUG	chr2:86276172-86276383(-)$1	211	93	125	12.0808
acccugcgcuggcacuuucugucugugacuau	chr5:138066716-138067009(+)$1	293	165	197	13.7917
UCCAUACCCAGGCCCGUAAGGCUGCGGGCUGU	chr17:76187174-76187455(+)$1	281	224	256	15.0199
AGCGACCAAAGUCUGAACAAAGUGAUUGGUAC	chr17:27049545-27049810(+)$1	265	76	108	10.8046
AGAUGAGGUACAUUUGCCUAUGUUACUUAUAU	chr11:10823046-10823253(-)$1	207	39	71	15.6246
ACCGGAGGUGUGAGUGUGCAUGUCUCCAGGCC	chr16:28883206-28883435(+)$1	229	100	132	9.6424
CUCUAGUCAGCCUGGUCGGGGGCACCAUUAAG	chr16:50623237-50623460(+)$1	223	173	205	13.9092
GUUCUGGCUGCAAGGGAGACUgcagcugggcc	chr9:134281679-134281990(+)$1	311	169	201	10.8524
CCAGGGUAAACAGUCCCGAGUGACUGUGGCUC	chr16:50650818-50651099(+)$1	281	214	246	9.5817
UGCAGCCCUGGCAGUGUCCUACUUCCCAGGGC	chr17:7480027-7480274(+)$1	247	153	185	13.0790
GCCGCAGUGGGCAGGUGCGACUGUGCGCGGCC	chr1:3689252-3689484(+)$1	232	139	171	11.8775
CAGAUUUAAUCAUGAAGAGAUGUACUAUCUGU	chr1:173835343-173835586(-)$1	243	105	137	13.0789
GAAGCUCAUCAGUGGGGCCACGAGCUGAGUGC	chr14:20811424-20811649(-)$1	225	91	123	10.1770
GUACCGGAGGUGUGAGUGUGCAUGUCUCCAGG	chr16:28883203-28883406(+)$1	203	101	133	10.7074
GAAGCUCAUCAGUGGGGCCACGAGCUGAGUGC	chr14:20811412-20811617(-)$1	205	59	91	10.1770

#DB
..((((((.((((((....)))))).).))))	chr9:35657873-35658105(-)$1	1	181	213	8.2154
((((((....((((.....))))....)))).	chr9:35657836-35658044(-)$1	1	172	204	16.7559
..(((((..((((......))))..)))))..	chr11:10823017-10823246(-)$1	1	32	64	15.6246
.((((((((((.((((...))))..)))))))	chr17:7480116-7480359(+)$1	1	64	96	13.0790
..((((..((((((.....)))..)))..)))	chr17:73559195-73559408(+)$1	1	48	80	13.0050
(.((((.(..((((.....))))..).)))).	chr14:20811381-20811584(-)$1	1	142	174	16.7543
...(.(.((..(((......))).)).).)..	chr7:139025340-139025595(+)$1	1	56	88	11.1674
((..(((...((((....)))).)))..))))	chr6:43752772-43753018(+)$1	1	41	73	11.1530
(.((((.(..((((.....))))..).)))).	chr14:20811375-20811581(-)$1	1	139	171	16.7543
...(((..(((.((.....)).)))..)))..	chr21:47559794-47560051(-)$1	1	15	47	11.0208
.((((.....((((.....))))..)))))))	chr9:35657822-35658024(-)$1	1	152	184	14.9258
(.((((.(..((((.....))))..).)))).	chr14:20811384-20811591(-)$1	1	149	181	16.7543
.((((((((((.((((...))))..)))))))	chr17:7480112-7480316(+)$1	1	68	100	13.0790
..(((((((.((((.....)))).))))))).	chr15:25330938-25331190(+)$1	1	55	87	11.2724
((((...(((..((((...))))...)))..)	chr2:86276140-86276361(-)$1	1	71	103	12.0808
..(((((...(((......)))...)))))))	chr16:71792279-71792484(-)$1	1	126	158	14.5272
(.(((((..((.((((...)))).))))))).	chr3:48642989-48643247(-)$1	1	24	56	12.6507
..((...(((..((((...))))..)))...)	chr21:47558657-47558894(-)$1	1	93	125	11.7552
..((((..((((((.....)))..)))..)))	chr17:73559158-73559395(+)$1	1	85	117	13.0050
...(((..((((((.....).)))))..))).	chr14:20811366-20811573(-)$1	1	33	65	11.2220
)(.((((....((((...))))....)))).)	chr21:47566716-47566975(-)$1	1	198	230	13.1202
..(((((...((((.....))))...))))).	chr3:48642228-48642517(-)$1	1	217	249	17.7894
((((((....((((.....))))....)))).	chr9:35657833-35658036(-)$1	1	164	196	16.7559
(.((((.(..((((.....))))..).)))).	chr14:20811373-20811575(-)$1	1	133	165	16.7543
(((((...(.((((......)))).)))))))	chr1:3689284-3689497(+)$1	1	107	139	11.8775
((((((....((((.....))))....)))).	chr9:35657824-35658033(-)$1	1	161	193	16.7559
.(((((.((.((((.....)))).))))))))	chr17:8076801-8077006(-)$1	1	166	198	14.2765
(.((((.(..((((.....))))..).)))).	chr14:20811398-20811600(-)$1	1	158	190	16.7543
(.((((....((((.....))))....)))))	chr17:73029900-73030181(+)$1	1	14	46	16.6187
(((((((....(((....))))))))((((((	chr14:20811400-20811612(-)$1	1	54	86	10.1770
...(((((((((((.....))))))).)))).	chr16:50604953-50605217(+)$1	1	150	182	11.7739
(((((((....(((....))))))))((((((	chr14:20811417-20811624(-)$1	1	66	98	10.1770
(((((((....(((....))))))))((((((	chr14:20811391-20811596(-)$1	1	38	70	10.1770
(((((((.....(((...))).))))).))))	chr16:28883235-28883471(+)$1	1	50	82	10.4832
((((...(((..((((...))))...)))..)	chr2:86276172-86276383(-)$1	1	93	125	12.0808
(((..((((.((((.....)))).))).)...	chr5:138066716-138067009(+)$1	1	165	197	13.7917
.((((((((.((((.....))))..))).)))	chr17:76187174-76187455(+)$1	1	224	256	15.0199
((..(((((...((......))...)))))..	chr17:27049545-27049810(+)$1	1	76	108	10.8046
..(((((..((((......))))..)))))..	chr11:10823046-10823253(-)$1	1	39	71	15.6246
.(.(((((((((......))))))))).))))	chr16:28883206-28883435(+)$1	1	100	132	9.6424
.((((((..((((......))))...))).))	chr16:50623237-50623460(+)$1	1	173	205	13.9092
((((.(((((((.(.....)))))))))))))	chr9:134281679-134281990(+)$1	1	169	201	10.8524
..(((((..((((((......)))))).))))	chr16:50650818-50651099(+)$1	1	214	246	9.5817
.((((((((((.((((...))))..)))))))	chr17:7480027-7480274(+)$1	1	153	185	13.0790
(((((...(.((((......)))).)))))))	chr1:3689252-3689484(+)$1	1	139	171	11.8775
(((((.....(((......)))....))))).	chr1:173835343-173835586(-)$1	1	105	137	13.0789
(((((((....(((....))))))))((((((	chr14:20811424-20811649(-)$1	1	91	123	10.1770
)).))))))((((......))))(((.(((((	chr16:28883203-28883406(+)$1	1	101	133	10.7074
(((((((....(((....))))))))((((((	chr14:20811412-20811617(-)$1	1	59	91	10.1770

#PSSM
b : 0.14	" : 0.12	[ : 0.12	c : 0.10	D : 0.10	# : 0.08	! : 0.08	d : 0.06	g : 0.04	f : 0.04	e : 0.04	: : 0.02	$ : 0.02	B : 0.02	
[ : 0.14	" : 0.12	c : 0.10	D : 0.10	d : 0.08	e : 0.08	# : 0.06	= : 0.06	! : 0.06	g : 0.04	a : 0.04	f : 0.04	: : 0.02	$ : 0.02	b : 0.02	
e : 0.34	d : 0.26	" : 0.08	= : 0.06	g : 0.06	! : 0.04	[ : 0.04	f : 0.04	b : 0.02	c : 0.02	] : 0.02	
e : 0.34	d : 0.28	= : 0.06	! : 0.06	c : 0.06	g : 0.06	f : 0.06	a : 0.02	b : 0.02	i : 0.02	
e : 0.34	d : 0.28	c : 0.08	= : 0.06	" : 0.06	f : 0.06	[ : 0.04	g : 0.02	! : 0.02	i : 0.02	
e : 0.32	d : 0.26	" : 0.10	c : 0.08	= : 0.06	a : 0.04	$ : 0.04	g : 0.04	i : 0.02	f : 0.02	
e : 0.28	[ : 0.14	" : 0.10	# : 0.08	! : 0.08	c : 0.08	= : 0.06	$ : 0.04	g : 0.04	d : 0.04	i : 0.02	f : 0.02	
# : 0.20	! : 0.18	a : 0.12	" : 0.10	c : 0.10	= : 0.06	$ : 0.06	g : 0.06	b : 0.04	e : 0.02	i : 0.02	f : 0.02	
# : 0.20	! : 0.20	c : 0.16	= : 0.06	" : 0.06	$ : 0.06	g : 0.06	b : 0.04	e : 0.04	a : 0.04	[ : 0.02	i : 0.02	f : 0.02	
# : 0.20	c : 0.12	! : 0.12	[ : 0.12	d : 0.08	" : 0.08	= : 0.06	$ : 0.06	f : 0.04	g : 0.04	b : 0.02	e : 0.02	i : 0.02	
d : 0.44	# : 0.12	c : 0.10	! : 0.08	= : 0.06	f : 0.04	g : 0.04	b : 0.02	e : 0.02	$ : 0.02	" : 0.02	i : 0.02	
d : 0.46	c : 0.20	[ : 0.10	! : 0.06	f : 0.04	g : 0.04	e : 0.02	$ : 0.02	" : 0.02	i : 0.02	
d : 0.61	c : 0.22	f : 0.04	b : 0.04	e : 0.02	g : 0.02	o : 0.02	[ : 0.02	
d : 0.53	c : 0.18	o : 0.14	f : 0.04	b : 0.04	a : 0.04	g : 0.02	
n : 0.42	o : 0.22	d : 0.16	m : 0.12	f : 0.04	c : 0.02	
n : 0.42	o : 0.24	m : 0.14	d : 0.14	l : 0.04	
n : 0.42	o : 0.24	l : 0.18	m : 0.14	
n : 0.42	o : 0.24	l : 0.18	m : 0.14	
n : 0.42	o : 0.22	l : 0.14	c : 0.12	d : 0.04	m : 0.02	i : 0.02	
d : 0.57	c : 0.20	o : 0.10	a : 0.04	f : 0.02	b : 0.02	g : 0.02	i : 0.02	
d : 0.61	c : 0.22	b : 0.04	g : 0.04	f : 0.02	] : 0.02	i : 0.02	o : 0.02	
d : 0.61	e : 0.12	c : 0.10	f : 0.04	] : 0.04	g : 0.04	b : 0.02	i : 0.02	
d : 0.57	e : 0.14	f : 0.04	2 : 0.04	c : 0.04	3 : 0.04	4 : 0.04	g : 0.04	] : 0.02	i : 0.02	
2 : 0.30	e : 0.14	4 : 0.12	3 : 0.12	] : 0.10	c : 0.06	f : 0.04	d : 0.04	g : 0.04	i : 0.02	
2 : 0.26	e : 0.14	4 : 0.12	c : 0.12	3 : 0.12	b : 0.06	g : 0.06	f : 0.04	] : 0.04	i : 0.02	
e : 0.22	c : 0.14	a : 0.14	4 : 0.12	3 : 0.08	= : 0.06	b : 0.06	g : 0.06	] : 0.02	2 : 0.02	d : 0.02	i : 0.02	f : 0.02	
e : 0.28	c : 0.16	] : 0.14	4 : 0.08	= : 0.06	2 : 0.06	f : 0.06	d : 0.04	g : 0.04	a : 0.02	i : 0.02	[ : 0.02	
e : 0.30	d : 0.24	c : 0.12	] : 0.10	2 : 0.08	= : 0.06	f : 0.04	a : 0.02	g : 0.02	
e : 0.34	d : 0.28	c : 0.10	= : 0.06	2 : 0.04	] : 0.04	f : 0.04	a : 0.04	g : 0.02	3 : 0.02	
e : 0.38	d : 0.30	= : 0.06	a : 0.04	c : 0.04	2 : 0.04	3 : 0.04	f : 0.04	g : 0.02	] : 0.02	
e : 0.32	d : 0.30	2 : 0.08	= : 0.06	3 : 0.06	4 : 0.04	c : 0.04	f : 0.04	g : 0.02	] : 0.02	
] : 0.20	e : 0.16	a : 0.12	d : 0.10	4 : 0.06	= : 0.06	2 : 0.06	3 : 0.06	g : 0.04	f : 0.04	c : 0.04	: : 0.02	b : 0.02	

#score	638.6995880922901
#seq	49
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_transcript_m3_run1.txt

#BEAR
ccceeeeepppppppeeeee5	chr15:58357478-58357766(-)$1	288	195	216	14.8376
iiii[cccpppppppccc]ii	chr16:89788246-89788564(+)$1	318	18	39	15.1514
ggffffffpppppppffffff	chr20:45852789-45853067(-)$1	278	152	173	13.9893
gggg[cccpppppppccc22g	chr16:11936035-11936290(-)$1	255	139	160	15.0379
[bbeeeeepppppppeeeee]	chrX:153578254-153578485(-)$1	231	143	164	15.4711
##ddddbbpppppppbb]ddd	chr1:144916382-144916668(-)$1	286	126	147	13.3897
iiiiiiiipppppppiiiiii	chr17:38297114-38297398(+)$1	284	24	45	14.8849
GGGeeeeepppppppeeeee:	chr19:54632504-54632785(+)$1	281	234	255	13.4027
hhhhddddpppppppdddd]h	chr2:97269844-97270088(-)$1	244	208	229	14.3971
[a!!ddddpppppppddddaf	chr9:131398405-131398663(-)$1	258	9	30	15.2715
ba"""cccpppppppccc333	chr4:24538506-24538779(-)$1	273	6	27	14.9262
hhh[ddddpppppppdddd]h	chr1:47765338-47765649(-)$1	311	25	46	14.6998
bbb[ddddpppppppdddd]b	chr16:1556307-1556617(+)$1	310	51	72	14.7371
=====[bbpppppppbb====	chr5:177632014-177632276(+)$1	262	151	172	14.3493
dd"""cccpppppppccc22d	chr12:48185611-48185908(-)$1	297	239	260	14.0640
ccc[ddddpppppppdddd22	chr20:35234475-35234769(+)$1	294	252	273	15.2461
ccceeeeepppppppeeeee]	chr22:20755051-20755305(+)$1	254	83	104	15.6075
:gggggggpppppppgggggg	chr2:176045777-176046030(-)$1	253	153	174	14.3475
"""eeeeepppppppeeeeeg	chr7:148512397-148512623(-)$1	226	12	33	15.6449
c[bb[cccpppppppccc]bb	chr1:29063556-29063848(+)$1	292	166	187	13.8901
g!!eeeeepppppppeeeee2	chr1:155921105-155921369(-)$1	264	153	174	15.7343
cc!!ddddpppppppdddd22	chr3:23958700-23959026(+)$1	326	142	163	15.3562
bbdddd[apppppppadddde	chr5:176798741-176799030(+)$1	289	168	189	14.0488
!gggggggpppppppgggggg	chr6:38670450-38670699(-)$1	249	44	65	15.3120
Egggggggpppppppgggggg	chr1:28159200-28159484(+)$1	284	70	91	14.3274
eeee[cccpppppppccc]ee	chr12:124111449-124111724(-)$1	275	92	113	14.4953
""ffffffpppppppffffff	chr1:242014058-242014300(+)$1	242	44	65	13.9398
gggggg[apppppppaggggg	chr6:4061855-4062111(+)$1	256	205	226	15.1707
igggggggpppppppgggggg	chr18:224914-225179(-)$1	265	88	109	15.2150
eeffffffpppppppffffff	chr6:56963941-56964221(+)$1	280	113	134	13.5625
ccc[ddddpppppppdddd]c	chr11:18363085-18363380(+)$1	295	10	31	15.3394
cc!!ddddpppppppdddd22	chr12:131357574-131357842(+)$1	268	16	37	15.3562
$$$eeeeepppppppeeeee2	chr17:4110991-4111349(-)$1	358	117	138	14.9819
[bb!!cccpppppppccc22b	chr11:68355396-68355644(+)$1	248	93	114	14.5177
bb[cccbbpppppppbb]ccc	chr5:111496905-111497210(+)$1	305	61	82	13.4310
:bbeeeeepppppppeeeee]	chr17:7407037-7407333(+)$1	296	204	225	14.5103
gggggg[apppppppaggggg	chr11:122929155-122929390(-)$1	235	142	163	15.1707
cc[eeeeepppppppeeeee]	chr1:229588061-229588309(-)$1	248	202	223	15.7150
[gggggggpppppppgggggg	chrX:140992497-140992773(+)$1	276	106	127	15.3083
[bbeeeeepppppppeeeee4	chr19:56203846-56204080(+)$1	234	13	34	15.3865
FFFeeeeepppppppeeeee:	chr22:51020515-51020786(-)$1	271	123	144	13.5714
ccceeeeepppppppeeeee:	chr5:29162589-29162852(+)$1	263	63	84	14.7194
gggggcccpppppppcccbb[	chr5:145610380-145610627(+)$1	247	94	115	14.2197
gggeeeeepppppppeeeee5	chr10:21823626-21823874(+)$1	248	206	227	15.0426
ggggddddpppppppdddd22	chr8:101936909-101937230(-)$1	321	50	71	15.3481
ggggg[bbpppppppbbgggg	chr15:42805559-42805812(+)$1	253	197	218	14.3777
e!!eeeeepppppppeeeee2	chr1:6604640-6604930(-)$1	290	139	160	15.5359
eeeee[bbpppppppbb]eee	chr8:48851884-48852158(-)$1	274	170	191	13.6337
GGGeeeeepppppppeeeee:	chr18:33739672-33739970(+)$1	298	70	91	13.4027
'gggggggpppppppgggggg	chr3:196807688-196808004(-)$1	316	256	277	14.5997
!bb[ddddpppppppdddd]b	chr1:12639105-12639364(-)$1	259	148	169	15.0223
fff!!cccpppppppcccfff	chr1:33092916-33093208(-)$1	292	30	51	14.6685
fff[ddddpppppppddddff	chr5:98223632-98223913(-)$1	281	163	184	14.8840
ccc[ddddpppppppdddd]c	chr8:103357311-103357566(-)$1	255	149	170	15.3394
[gggggggpppppppgggggg	chr6:31805122-31805398(+)$1	276	56	77	15.3083
!dddd[bbpppppppbb]ddd	chr12:54678101-54678396(+)$1	295	154	175	13.2452
ffffff[apppppppa]ffff	chr19:1046485-1046752(+)$1	267	53	74	13.8025
====ddddpppppppdddd>>	chr5:908484-908809(+)$1	325	245	266	15.0717
dddd[cccpppppppcccddd	chr1:1275095-1275373(-)$1	278	204	225	13.9693
d::eeeeepppppppeeeee:	chr17:79596491-79596756(-)$1	265	30	51	12.7337
bb!!ddddpppppppdddd44	chr3:47042320-47042594(+)$1	274	27	48	15.1116
b[ffffffpppppppffffff	chr2:111417377-111417632(-)$1	255	115	136	13.7449

#otherMatches

#Seq PSSM
ACUGGGGCGUUUGAAGCCCCG	chr15:58357478-58357766(-)$1	288	195	216	14.8376
gcccgggcguggcggguuggg	chr16:89788246-89788564(+)$1	318	18	39	15.1514
CUCCCCUGUGGACUUCAGGGG	chr20:45852789-45853067(-)$1	278	152	173	13.9893
cagucgccagaucugggcuca	chr16:11936035-11936290(-)$1	255	139	160	15.0379
AGCUCUUGGUGACAACAGGAG	chrX:153578254-153578485(-)$1	231	143	164	15.4711
UUGGUUCAGUGAUUAUGUAAU	chr1:144916382-144916668(-)$1	286	126	147	13.3897
UUUUUUUUGUUUUUGAGAGAA	chr17:38297114-38297398(+)$1	284	24	45	14.8849
ACUCCAGGUACCUCCCCUGGG	chr19:54632504-54632785(+)$1	281	234	255	13.4027
UCUGGGUCUUAGAGUGAUCAU	chr2:97269844-97270088(-)$1	244	208	229	14.3971
AGACCUGCGUCCCCAGCAGCC	chr9:131398405-131398663(-)$1	258	9	30	15.2715
ACGGAGGCCAAGAAAGCCGCA	chr4:24538506-24538779(-)$1	273	6	27	14.9262
GAGCAGUAAUCUGAAUAUUUC	chr1:47765338-47765649(-)$1	311	25	46	14.6998
CUUGGGGGACAGGGACCCUGG	chr16:1556307-1556617(+)$1	310	51	72	14.7371
cggACUGUCGCCGCUGCGUUC	chr5:177632014-177632276(+)$1	262	151	172	14.3493
CCGGAGCCAGUGUGAGGUGAG	chr12:48185611-48185908(-)$1	297	239	260	14.0640
CGGGCAGGGUUUGUGCCUGAA	chr20:35234475-35234769(+)$1	294	252	273	15.2461
CCCUGGUGCCAGAUAUAUCAU	chr22:20755051-20755305(+)$1	254	83	104	15.6075
CGAGGCCUAGCUGUCAGGCCU	chr2:176045777-176046030(-)$1	253	153	174	14.3475
ACAGCUGAAAAAGGGUUAGCA	chr7:148512397-148512623(-)$1	226	12	33	15.6449
GGCCCGCCGCUCCUGGGCAGG	chr1:29063556-29063848(+)$1	292	166	187	13.8901
UUAGGUGGGGCAUGGUCAUCC	chr1:155921105-155921369(-)$1	264	153	174	15.7343
AAGAUGUGAUGGCGGCGCGAA	chr3:23958700-23959026(+)$1	326	142	163	15.3562
GGGCCCACGACCAGAGGGGCC	chr5:176798741-176799030(+)$1	289	168	189	14.0488
GGUCCGCCGGCCUCGGGCGGA	chr6:38670450-38670699(-)$1	249	44	65	15.3120
GGUAAGCCCCCUCCCGGUUUA	chr1:28159200-28159484(+)$1	284	70	91	14.3274
AUUUAGUGUAUACGUCACAGA	chr12:124111449-124111724(-)$1	275	92	113	14.4953
ACUGAUGGACAAAGACUAUUA	chr1:242014058-242014300(+)$1	242	44	65	13.9398
UGCAUGUGAAGUGGACCAUGC	chr6:4061855-4062111(+)$1	256	205	226	15.1707
GAGGUAUGUGUUUUUUAUGCU	chr18:224914-225179(-)$1	265	88	109	15.2150
AUGGGCUAAAAUAGGUAGUCC	chr6:56963941-56964221(+)$1	280	113	134	13.5625
UAGGAGUGAAAAACCCACUAC	chr11:18363085-18363380(+)$1	295	10	31	15.3394
CAGAGGACCUAUUAAGUUCAA	chr12:131357574-131357842(+)$1	268	16	37	15.3562
CCCAGGUACUGUAGCUGCCUU	chr17:4110991-4111349(-)$1	358	117	138	14.9819
CAAGUGAGUAUGUUUUUCUGU	chr11:68355396-68355644(+)$1	248	93	114	14.5177
GUCGGGAGUGAUCACCUACCC	chr5:111496905-111497210(+)$1	305	61	82	13.4310
uagcucucauucauggagaga	chr17:7407037-7407333(+)$1	296	204	225	14.5103
AGUUACACAUACACAGGUAAU	chr11:122929155-122929390(-)$1	235	142	163	15.1707
CUAAUUAGAGAAAAAUUAAUC	chr1:229588061-229588309(-)$1	248	202	223	15.7150
AGUGCACGACCUGACUGUGUA	chrX:140992497-140992773(+)$1	276	106	127	15.3083
GUCCCAGGGGCAGAGCCUGGC	chr19:56203846-56204080(+)$1	234	13	34	15.3865
AGCGCCGCAGCACCAGUGGCU	chr22:51020515-51020786(-)$1	271	123	144	13.5714
GGACAAAAGGAAUUAUUUUGA	chr5:29162589-29162852(+)$1	263	63	84	14.7194
AUGAUGGUAAAAAUCACCACC	chr5:145610380-145610627(+)$1	247	94	115	14.2197
cggccgcGGGAGGGACGCGGA	chr10:21823626-21823874(+)$1	248	206	227	15.0426
UACUUGGCUGAGGUUGCCGCU	chr8:101936909-101937230(-)$1	321	50	71	15.3481
AAGAAUGUUAUGUUUACUUCU	chr15:42805559-42805812(+)$1	253	197	218	14.3777
UAGAGAUUACAUACAGGUCUA	chr1:6604640-6604930(-)$1	290	139	160	15.5359
ugggcgugaacugcacaggcu	chr8:48851884-48852158(-)$1	274	170	191	13.6337
GUACUGGUUUUGAGUAUCAGC	chr18:33739672-33739970(+)$1	298	70	91	13.4027
UUAUCAAAACUAUCAUUUGAU	chr3:196807688-196808004(-)$1	316	256	277	14.5997
AUGUCCACGAACAAGGUGGCC	chr1:12639105-12639364(-)$1	259	148	169	15.0223
AAUCUUAAUCAUGUUUUAAUU	chr1:33092916-33093208(-)$1	292	30	51	14.6685
UUCCUGUGCAUAUUUUACAGA	chr5:98223632-98223913(-)$1	281	163	184	14.8840
UGAUGUCAAGGACUAUGACUU	chr8:103357311-103357566(-)$1	255	149	170	15.3394
UGGAGAGCCAUGCCUGUUCUC	chr6:31805122-31805398(+)$1	276	56	77	15.3083
AACAAACUUGAUAUUGGAUUG	chr12:54678101-54678396(+)$1	295	154	175	13.2452
CCUGCUGCAGCGGGAGGAGCA	chr19:1046485-1046752(+)$1	267	53	74	13.8025
AGCAGCAUAUCACAAAUGCUU	chr5:908484-908809(+)$1	325	245	266	15.0717
CAUGAGCAAUGACGAUGCCGU	chr1:1275095-1275373(-)$1	278	204	225	13.9693
CUCAGGAUAUUUUUCAUCCUC	chr17:79596491-79596756(-)$1	265	30	51	12.7337
GCCAGGCUCACUGUUAGCCAA	chr3:47042320-47042594(+)$1	274	27	48	15.1116
UUCCUCUGUAUCACUCAGAGG	chr2:111417377-111417632(-)$1	255	115	136	13.7449

#DB
((((((((.......))))).	chr15:58357478-58357766(-)$1	1	195	216	14.8376
((((.(((.......))).))	chr16:89788246-89788564(+)$1	1	18	39	15.1514
((((((((.......))))))	chr20:45852789-45853067(-)$1	1	152	173	13.9893
((((.(((.......)))..)	chr16:11936035-11936290(-)$1	1	139	160	15.0379
.(((((((.......))))).	chrX:153578254-153578485(-)$1	1	143	164	15.4711
..((((((.......)).)))	chr1:144916382-144916668(-)$1	1	126	147	13.3897
((((((((.......))))))	chr17:38297114-38297398(+)$1	1	24	45	14.8849
)))(((((.......))))).	chr19:54632504-54632785(+)$1	1	234	255	13.4027
((((((((.......)))).)	chr2:97269844-97270088(-)$1	1	208	229	14.3971
.(..((((.......))))))	chr9:131398405-131398663(-)$1	1	9	30	15.2715
((...(((.......)))...	chr4:24538506-24538779(-)$1	1	6	27	14.9262
(((.((((.......)))).)	chr1:47765338-47765649(-)$1	1	25	46	14.6998
(((.((((.......)))).)	chr16:1556307-1556617(+)$1	1	51	72	14.7371
(((((.((.......))))))	chr5:177632014-177632276(+)$1	1	151	172	14.3493
((...(((.......)))..)	chr12:48185611-48185908(-)$1	1	239	260	14.0640
(((.((((.......))))..	chr20:35234475-35234769(+)$1	1	252	273	15.2461
((((((((.......))))).	chr22:20755051-20755305(+)$1	1	83	104	15.6075
.(((((((.......))))))	chr2:176045777-176046030(-)$1	1	153	174	14.3475
...(((((.......))))))	chr7:148512397-148512623(-)$1	1	12	33	15.6449
(.((.(((.......))).))	chr1:29063556-29063848(+)$1	1	166	187	13.8901
(..(((((.......))))).	chr1:155921105-155921369(-)$1	1	153	174	15.7343
((..((((.......))))..	chr3:23958700-23959026(+)$1	1	142	163	15.3562
))((((.(.......)))))(	chr5:176798741-176799030(+)$1	1	168	189	14.0488
.(((((((.......))))))	chr6:38670450-38670699(-)$1	1	44	65	15.3120
((((((((.......))))))	chr1:28159200-28159484(+)$1	1	70	91	14.3274
((((.(((.......))).))	chr12:124111449-124111724(-)$1	1	92	113	14.4953
..((((((.......))))))	chr1:242014058-242014300(+)$1	1	44	65	13.9398
((((((.(.......))))))	chr6:4061855-4062111(+)$1	1	205	226	15.1707
)(((((((.......))))))	chr18:224914-225179(-)$1	1	88	109	15.2150
))((((((.......))))))	chr6:56963941-56964221(+)$1	1	113	134	13.5625
(((.((((.......)))).)	chr11:18363085-18363380(+)$1	1	10	31	15.3394
((..((((.......))))..	chr12:131357574-131357842(+)$1	1	16	37	15.3562
...(((((.......))))).	chr17:4110991-4111349(-)$1	1	117	138	14.9819
.((..(((.......)))..)	chr11:68355396-68355644(+)$1	1	93	114	14.5177
((.(((((.......)).)))	chr5:111496905-111497210(+)$1	1	61	82	13.4310
.(((((((.......))))).	chr17:7407037-7407333(+)$1	1	204	225	14.5103
((((((.(.......))))))	chr11:122929155-122929390(-)$1	1	142	163	15.1707
((.(((((.......))))).	chr1:229588061-229588309(-)$1	1	202	223	15.7150
.(((((((.......))))))	chrX:140992497-140992773(+)$1	1	106	127	15.3083
.(((((((.......))))).	chr19:56203846-56204080(+)$1	1	13	34	15.3865
)))(((((.......))))).	chr22:51020515-51020786(-)$1	1	123	144	13.5714
)))(((((.......))))).	chr5:29162589-29162852(+)$1	1	63	84	14.7194
)))))(((.......)))((.	chr5:145610380-145610627(+)$1	1	94	115	14.2197
((((((((.......))))).	chr10:21823626-21823874(+)$1	1	206	227	15.0426
((((((((.......))))..	chr8:101936909-101937230(-)$1	1	50	71	15.3481
(((((.((.......))))))	chr15:42805559-42805812(+)$1	1	197	218	14.3777
(..(((((.......))))).	chr1:6604640-6604930(-)$1	1	139	160	15.5359
(((((.((.......)).)))	chr8:48851884-48852158(-)$1	1	170	191	13.6337
((((((((.......))))).	chr18:33739672-33739970(+)$1	1	70	91	13.4027
.(((((((.......))))))	chr3:196807688-196808004(-)$1	1	256	277	14.5997
.((.((((.......)))).)	chr1:12639105-12639364(-)$1	1	148	169	15.0223
(((..(((.......))))))	chr1:33092916-33093208(-)$1	1	30	51	14.6685
(((.((((.......))))))	chr5:98223632-98223913(-)$1	1	163	184	14.8840
(((.((((.......)))).)	chr8:103357311-103357566(-)$1	1	149	170	15.3394
.(((((((.......))))))	chr6:31805122-31805398(+)$1	1	56	77	15.3083
.((((.((.......)).)))	chr12:54678101-54678396(+)$1	1	154	175	13.2452
((((((.(.......).))))	chr19:1046485-1046752(+)$1	1	53	74	13.8025
((((((((.......))))..	chr5:908484-908809(+)$1	1	245	266	15.0717
((((.(((.......))))))	chr1:1275095-1275373(-)$1	1	204	225	13.9693
)..(((((.......))))).	chr17:79596491-79596756(-)$1	1	30	51	12.7337
((..((((.......))))..	chr3:47042320-47042594(+)$1	1	27	48	15.1116
(.((((((.......))))))	chr2:111417377-111417632(-)$1	1	115	136	13.7449

#PSSM
c : 0.16	g : 0.14	[ : 0.09	b : 0.09	e : 0.06	i : 0.04	d : 0.04	! : 0.04	f : 0.04	G : 0.03	h : 0.03	= : 0.03	: : 0.03	" : 0.03	# : 0.01	E : 0.01	$ : 0.01	F : 0.01	' : 0.01	
g : 0.24	c : 0.14	b : 0.14	d : 0.04	e : 0.04	f : 0.04	i : 0.03	G : 0.03	h : 0.03	a : 0.03	= : 0.03	" : 0.03	[ : 0.03	! : 0.03	# : 0.01	$ : 0.01	F : 0.01	: : 0.01	
g : 0.22	f : 0.11	b : 0.11	c : 0.09	! : 0.09	d : 0.06	" : 0.04	i : 0.03	G : 0.03	h : 0.03	= : 0.03	e : 0.03	[ : 0.03	$ : 0.01	F : 0.01	: : 0.01	
e : 0.29	g : 0.20	[ : 0.11	! : 0.09	f : 0.08	d : 0.06	i : 0.03	" : 0.03	= : 0.03	h : 0.01	b : 0.01	c : 0.01	
e : 0.27	d : 0.27	g : 0.17	[ : 0.08	f : 0.08	" : 0.03	! : 0.03	i : 0.01	= : 0.01	c : 0.01	
e : 0.25	d : 0.25	c : 0.17	g : 0.14	f : 0.08	[ : 0.06	i : 0.01	
e : 0.25	d : 0.22	c : 0.16	g : 0.11	b : 0.09	f : 0.06	[ : 0.06	i : 0.01	
e : 0.25	d : 0.22	c : 0.16	g : 0.11	b : 0.09	f : 0.06	a : 0.06	i : 0.01	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
e : 0.25	d : 0.22	c : 0.16	g : 0.11	b : 0.09	f : 0.06	a : 0.06	i : 0.01	
e : 0.25	d : 0.24	c : 0.16	g : 0.14	b : 0.09	f : 0.06	i : 0.01	] : 0.01	
e : 0.25	d : 0.24	c : 0.16	g : 0.16	f : 0.08	] : 0.06	i : 0.01	= : 0.01	
d : 0.29	e : 0.27	g : 0.16	f : 0.09	] : 0.04	2 : 0.04	i : 0.01	3 : 0.01	= : 0.01	c : 0.01	b : 0.01	
e : 0.29	g : 0.16	f : 0.11	2 : 0.11	] : 0.09	d : 0.06	i : 0.03	b : 0.03	a : 0.01	3 : 0.01	= : 0.01	c : 0.01	> : 0.01	4 : 0.01	
g : 0.19	f : 0.12	2 : 0.11	: : 0.08	] : 0.06	d : 0.06	b : 0.06	e : 0.04	c : 0.04	5 : 0.03	i : 0.03	h : 0.03	4 : 0.03	3 : 0.01	= : 0.01	[ : 0.01	> : 0.01	

#score	907.579923468875
#seq	62
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_transcript_m1_run1.txt

#BEAR
fffff^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr14:50306017-50306264(-)$1	247	133	167	32.5388
^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr17:44292335-44292548(-)$1	213	96	130	33.7049
(((((ccc^^^^^^^^^^^^^^^^^^^^ccc999	chr9:36230916-36231150(+)$1	234	135	169	29.5455
hhggggggg^^^^^^^^^^^^^^^^^^^gggggg	chr2:217216104-217216326(+)$1	222	117	151	32.0053
###ffffff^^^^^^^^^^^^^^^^^^ffffff]	chr9:19378741-19378949(-)$1	208	154	188	32.1069
:::ffffff^^^^^^^^^^^^^^^^^^^^fffff	chr16:30482885-30483123(+)$1	238	68	102	30.4897
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr14:50553660-50553898(+)$1	238	138	172	33.8377
####eeeee^^^^^^^^^^^^^^^^^^eeeee33	chr7:148680782-148680988(+)$1	206	24	58	33.7072
####eeeee^^^^^^^^^^^^^^^^^^eeeee33	chr7:148680799-148681015(+)$1	216	7	41	33.7072
:bb!!eeeeeyyyyyyyyyyyyyyyyeeeee22b	chr9:21160136-21160368(-)$1	232	191	225	23.3253
ee::ffffff^^^^^^^^^^^^^^^^^^ffffff	chr9:19378759-19378966(-)$1	207	170	204	28.8671
####eeeee^^^^^^^^^^^^^^^^^^eeeee33	chr7:148680788-148680992(+)$1	204	18	52	33.7072
:::::dddd^^^^^^^^^^^^^^^^^^^^^^ddd	chr15:56926136-56926345(-)$1	209	171	205	28.8624
Chhhhhhhh^^^^^^^^^^^^^^^^^^^hhhhhh	chr1:156453811-156454074(-)$1	263	175	209	27.8768
"dddd!!bb^^^^^^^^^^^^^^^^^^^^^bb22	chrX:64905646-64905872(+)$1	226	133	167	32.0670
####eeeeexxxxxxxxxxxxxxxeeeee]gggg	chr7:10941551-10941768(+)$1	217	60	94	22.9843
##eeeee[bbyyyyyyyyyyyyyyyybbeeeee3	chr12:42848449-42848674(+)$1	225	34	68	24.8378
====eeeee^^^^^^^^^^^^^^^^^^^^^eeee	chrX:117048198-117048420(-)$1	222	73	107	33.5796
d[bb!!ddddyyyyyyyyyyyyyyyydddd4444	chr12:123252604-123252830(+)$1	226	74	108	23.8212
^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr9:33830868-33831110(+)$1	242	199	233	33.7049
d[ccc[cccyyyyyyyyyyyyyyyyccc]ccc]d	chr10:10274538-10274771(+)$1	233	121	155	24.5422
####eeeeexxxxxxxxxxxxxxxeeeee]gggg	chr7:10941530-10941751(+)$1	221	81	115	22.9843
!!ggggggg^^^^^^^^^^^^^^^^^^^gggggg	chr22:51108216-51108427(+)$1	211	105	139	33.4208
""dddd[a[cccyyyyyyyyyyyyyyyyccca]d	chr17:48773982-48774219(+)$1	237	120	154	23.9552
c[a[dddd^^^^^^^^^^^^^^^^^^^^dddd]a	chr11:118706626-118706858(+)$1	232	105	139	33.2111
d!!ffffffyyyyyyyyyyyyyyyyffffff]dd	chr2:65061091-65061323(-)$1	232	123	157	23.4593
iiiiiii[a^^^^^^^^^^^^^^^^^^^^aiiii	chr3:15888427-15888634(-)$1	207	146	180	33.0898
!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr10:30610104-30610348(-)$1	244	148	182	34.0940
####eeeee^^^^^^^^^^^^^^^^^^eeeee33	chr7:148680769-148680982(+)$1	213	37	71	33.7072
gggffffff^^^^^^^^^^^^^^^^^^^^fffff	chr14:50058874-50059097(-)$1	223	136	170	32.4816
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^ee	chr11:33025699-33025932(-)$1	233	129	163	33.9064
###ffffff^^^^^^^^^^^^^^^^^^ffffff]	chr9:19378749-19378959(-)$1	210	164	198	32.1069
:ccc!!bb^^^^^^^^^^^^^^^^^^^^bb22cc	chr14:90051965-90052203(+)$1	238	126	160	30.9360
dddd:dddd^^^^^^^^^^^^^^^^^^^ddddDD	chr11:118841148-118841377(+)$1	229	27	61	28.1828
"dddd!!bb^^^^^^^^^^^^^^^^^^^^^bb22	chrX:64905672-64905882(+)$1	210	107	141	32.0670
:::::eeeee^^^^^^^^^^^^^^^^^^eeeee:	chr12:103872546-103872772(-)$1	226	67	101	26.9508
c[eeeee^^^^^^^^^^^^^^^^^^^^^^^^eee	chr18:47397868-47398097(-)$1	229	24	58	33.5740
^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]f	chr6:151619956-151620167(-)$1	211	50	84	33.4810
c[a[dddd^^^^^^^^^^^^^^^^^^^^dddd]a	chr11:118706618-118706826(+)$1	208	113	147	33.2111
cc"""ddddyyyyyyyyyyyyyyyyddddccc]c	chr2:200647953-200648211(-)$1	258	67	101	24.2130
iiiiiii[a^^^^^^^^^^^^^^^^^^^^aiiii	chr3:15888410-15888627(-)$1	217	139	173	33.0898
!!ggggggg^^^^^^^^^^^^^^^^^^^gggggg	chr14:31727715-31727948(-)$1	233	167	201	33.4208
!!ggggggg^^^^^^^^^^^^^^^^^^^gggggg	chr22:51108194-51108416(+)$1	222	127	161	33.4208
!!cccdddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:171639644-171639879(+)$1	235	127	161	33.4948
====eeeee^^^^^^^^^^^^^^^^^^^^^eeee	chrX:117048168-117048398(-)$1	230	51	85	33.5796
ccc!!dddd^^^^^^^^^^^^^^^^^^^^dddd3	chr6:74227976-74228204(-)$1	228	121	155	33.0599
FFFFffffff^^^^^^^^^^^^^^^^^^ffffff	chr13:50482742-50482956(-)$1	214	20	54	29.0898
gggg!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:30965895-30966136(+)$1	241	139	173	33.0072
a[ccc[ccc^^^^^^^^^^^^^^^^^^^^ccc]c	chr18:43793240-43793487(+)$1	247	29	63	33.7598
^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr10:128256272-128256488(-)$1	216	37	71	33.7049
####eeeee^^^^^^^^^^^^^^^^^^eeeee33	chr7:148680792-148680999(+)$1	207	14	48	33.7072
!!ffffff^^^^^^^^^^^^^^^^^^^^^^^^^f	chr3:169962529-169962743(+)$1	214	129	163	33.4621
g[ccc^^^^^^^^^^^^^^^^^^^^^^^ccc]gg	chr3:101177334-101177569(+)$1	235	119	153	33.4361
e^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr20:32971889-32972127(-)$1	238	144	178	33.7040
=####dddd^^^^^^^^^^^^^^^^^^^dddd33	chr1:147802375-147802625(+)$1	250	184	218	33.6737
!ccc[dddd^^^^^^^^^^^^^^^^^^^^dddd]	chr2:173422780-173423016(-)$1	236	164	198	33.0578
HH::eeeee^^^^^^^^^^^^^^^^^^^eeeeef	chr3:133361781-133362019(-)$1	238	118	152	30.4524

#otherMatches

#Seq PSSM
uaacuagucuACAUUAAAUAAAUAAAUAAAGUUG	chr14:50306017-50306264(-)$1	247	133	167	32.5388
cacuugauuagccuuAAAACAAAAUAACAGUAGU	chr17:44292335-44292548(-)$1	213	96	130	33.7049
cacugcuucacuaaaaaaaaaaaaaaaaaagaaa	chr9:36230916-36231150(+)$1	234	135	169	29.5455
ccuuuaaaaaauaaauaaauaaaauaaauuuuaa	chr2:217216104-217216326(+)$1	222	117	151	32.0053
GGAGAACUGGAGAAAGAAAGAGAAAAUCAGUUCG	chr9:19378741-19378949(-)$1	208	154	188	32.1069
aauggagcacaaccaguuaccaauaucuuuguuc	chr16:30482885-30483123(+)$1	238	68	102	30.4897
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGCU	chr14:50553660-50553898(+)$1	238	138	172	33.8377
UUUCGAGGCUUAUAUAAGUAGCAGCGUGCCUUUG	chr7:148680782-148680988(+)$1	206	24	58	33.7072
UUUCGAGGCUUAUAUAAGUAGCAGCGUGCCUUUG	chr7:148680799-148681015(+)$1	216	7	41	33.7072
uguccaccuuucagcaaaaaauuaacaagguacg	chr9:21160136-21160368(-)$1	232	191	225	23.3253
AGGAGAACUGGAGAAAGAAAGAGAAAAUCAGUUC	chr9:19378759-19378966(-)$1	207	170	204	28.8671
UUUCGAGGCUUAUAUAAGUAGCAGCGUGCCUUUG	chr7:148680788-148680992(+)$1	204	18	52	33.7072
UUUUCCAUGAUAAAAAAUAAUAUAUUAACUACAU	chr15:56926136-56926345(-)$1	209	171	205	28.8624
cuaggcuuAUAAAAAUAaaaagaaaccuuaggcu	chr1:156453811-156454074(-)$1	263	175	209	27.8768
auuugacuggcuuAAaaacaaacaaacaaacaaa	chrX:64905646-64905872(+)$1	226	133	167	32.0670
ccaagugguguuuauaacuaauugaucacaacca	chr7:10941551-10941768(+)$1	217	60	94	22.9843
gacagagacuccaucucaaaaaaaaaaGUUCUGA	chr12:42848449-42848674(+)$1	225	34	68	24.8378
AGUCUUUGCAUUUCCCUUGAGAGUACAAAAGCAG	chrX:117048198-117048420(-)$1	222	73	107	33.5796
augaucacaaccacuuacauauuucuuuguuccu	chr12:123252604-123252830(+)$1	226	74	108	23.8212
cuagcaaaaaaaaaaaaaaaaaaaaaaagaaUAG	chr9:33830868-33831110(+)$1	242	199	233	33.7049
acuucacuagccuAAAAAAUAAAAAUAGAGAAAU	chr10:10274538-10274771(+)$1	233	121	155	24.5422
ccaagugguguuuauaacuaauugaucacaacca	chr7:10941530-10941751(+)$1	221	81	115	22.9843
aguuuuAAAAAGUaaaaaaaaaaaaaaauuuaaa	chr22:51108216-51108427(+)$1	211	105	139	33.4208
uucacuugacuugccAAAAAAAAAAAAAAAGCCA	chr17:48773982-48774219(+)$1	237	120	154	23.9552
gcagugguguuacaacuaauuuaucacaaccagu	chr11:118706626-118706858(+)$1	232	105	139	33.2111
acuagccuuuAAAAAUGUCUUCACCAGGGCUCUC	chr2:65061091-65061323(-)$1	232	123	157	23.4593
ccagauaacuuauauuuacuagaccuuuuguguu	chr3:15888427-15888634(-)$1	207	146	180	33.0898
aaaguaaaaugaaauaaaauaaaauaaaauaaaG	chr10:30610104-30610348(-)$1	244	148	182	34.0940
UUUCGAGGCUUAUAUAAGUAGCAGCGUGCCUUUG	chr7:148680769-148680982(+)$1	213	37	71	33.7072
agccaaaaauaaaaaauaaaaaaaaaaaCUUUUU	chr14:50058874-50059097(-)$1	223	136	170	32.4816
ggCUUUUaaaaaacagaaaaacaaaaauaaggaa	chr11:33025699-33025932(-)$1	233	129	163	33.9064
GGAGAACUGGAGAAAGAAAGAGAAAAUCAGUUCG	chr9:19378749-19378959(-)$1	210	164	198	32.1069
acuugacuagaaaaaaaaaaaaaaagaaaggaag	chr14:90051965-90052203(+)$1	238	126	160	30.9360
acccugucucaaaaaaacaaaaaaguaaaGAUgg	chr11:118841148-118841377(+)$1	229	27	61	28.1828
auuugacuggcuuAAaaacaaacaaacaaacaaa	chrX:64905672-64905882(+)$1	210	107	141	32.0670
aauccccaaauaaucaacagacauauuuuuugga	chr12:103872546-103872772(-)$1	226	67	101	26.9508
CUGCCAGUCACUUACAGGACUACAAAUAACUCUG	chr18:47397868-47398097(-)$1	229	24	58	33.5740
cucauaucuuccccauucucuguaaaauggaguu	chr6:151619956-151620167(-)$1	211	50	84	33.4810
gcagugguguuacaacuaauuuaucacaaccagu	chr11:118706618-118706826(+)$1	208	113	147	33.2111
caaagauguAUACGagaacuuauuaacauuggug	chr2:200647953-200648211(-)$1	258	67	101	24.2130
ccagauaacuuauauuuacuagaccuuuuguguu	chr3:15888410-15888627(-)$1	217	139	173	33.0898
aaaauuagccaaaaaauaaaauaaauaaguuaau	chr14:31727715-31727948(-)$1	233	167	201	33.4208
aguuuuAAAAAGUaaaaaaaaaaaaaaauuuaaa	chr22:51108194-51108416(+)$1	222	127	161	33.4208
cuagucuAAAAGAAAAAACAAUUAAAAACACAAA	chr2:171639644-171639879(+)$1	235	127	161	33.4948
AGUCUUUGCAUUUCCCUUGAGAGUACAAAAGCAG	chrX:117048168-117048398(-)$1	230	51	85	33.5796
UGCUCAGGUAACAAUUUAAAGUAACAUUAACUUA	chr6:74227976-74228204(-)$1	228	121	155	33.0599
cuguuuuacaauuaacuuuuuauauauauguaag	chr13:50482742-50482956(-)$1	214	20	54	29.0898
gacuagccuuaaaaaaaaaaaaaaaaacuauaaa	chr15:30965895-30966136(+)$1	241	139	173	33.0072
GAAGAAUCAUUAUUCCAGAAUAUACAAUUUGAAU	chr18:43793240-43793487(+)$1	247	29	63	33.7598
UAUCUUUCCCUAGUCACUCCUCCCUCUCAAGGUG	chr10:128256272-128256488(-)$1	216	37	71	33.7049
UUUCGAGGCUUAUAUAAGUAGCAGCGUGCCUUUG	chr7:148680792-148680999(+)$1	207	14	48	33.7072
acuagccuAAAAAAUUAAUUAAUUAAAUaaaaca	chr3:169962529-169962743(+)$1	214	129	163	33.4621
cauuugacuagccuuuAAAAAAUAAAAAAGAAGA	chr3:101177334-101177569(+)$1	235	119	153	33.4361
cacuugacuUaaaaaaaaaaaaaaaaaaaaGAgg	chr20:32971889-32972127(-)$1	238	144	178	33.7040
GAUCCUCAGCCCGCCCGUUccccacccccugaaa	chr1:147802375-147802625(+)$1	250	184	218	33.6737
ggcacagugguucacgccuauaaucccagcacuu	chr2:173422780-173423016(-)$1	236	164	198	33.0578
gcuucacuugacuagccuuAAAAAAAAAAAGUGC	chr3:133361781-133362019(-)$1	238	118	152	30.4524

#DB
(((((........................)))))	chr14:50306017-50306264(-)$1	1	133	167	32.5388
............................))))))	chr17:44292335-44292548(-)$1	1	96	130	33.7049
.....(((....................)))...	chr9:36230916-36231150(+)$1	1	135	169	29.5455
))(((((((...................))))))	chr2:217216104-217216326(+)$1	1	117	151	32.0053
...((((((..................)))))).	chr9:19378741-19378949(-)$1	1	154	188	32.1069
...((((((....................)))))	chr16:30482885-30483123(+)$1	1	68	102	30.4897
.............................)))))	chr14:50553660-50553898(+)$1	1	138	172	33.8377
....(((((..................)))))..	chr7:148680782-148680988(+)$1	1	24	58	33.7072
....(((((..................)))))..	chr7:148680799-148681015(+)$1	1	7	41	33.7072
.((..(((((................)))))..)	chr9:21160136-21160368(-)$1	1	191	225	23.3253
))..((((((..................))))))	chr9:19378759-19378966(-)$1	1	170	204	28.8671
....(((((..................)))))..	chr7:148680788-148680992(+)$1	1	18	52	33.7072
.....((((......................)))	chr15:56926136-56926345(-)$1	1	171	205	28.8624
)((((((((...................))))))	chr1:156453811-156454074(-)$1	1	175	209	27.8768
.((((..((.....................))..	chrX:64905646-64905872(+)$1	1	133	167	32.0670
....(((((...............))))).))))	chr7:10941551-10941768(+)$1	1	60	94	22.9843
..(((((.((................))))))).	chr12:42848449-42848674(+)$1	1	34	68	24.8378
))))(((((.....................))))	chrX:117048198-117048420(-)$1	1	73	107	33.5796
(.((..((((................))))....	chr12:123252604-123252830(+)$1	1	74	108	23.8212
............................))))))	chr9:33830868-33831110(+)$1	1	199	233	33.7049
(.(((.(((................))).))).)	chr10:10274538-10274771(+)$1	1	121	155	24.5422
....(((((...............))))).))))	chr7:10941530-10941751(+)$1	1	81	115	22.9843
..(((((((...................))))))	chr22:51108216-51108427(+)$1	1	105	139	33.4208
..((((.(.(((................)))).)	chr17:48773982-48774219(+)$1	1	120	154	23.9552
(.(.((((....................)))).)	chr11:118706626-118706858(+)$1	1	105	139	33.2111
(..((((((................)))))).))	chr2:65061091-65061323(-)$1	1	123	157	23.4593
(((((((.(....................)))))	chr3:15888427-15888634(-)$1	1	146	180	33.0898
..(((............................)	chr10:30610104-30610348(-)$1	1	148	182	34.0940
....(((((..................)))))..	chr7:148680769-148680982(+)$1	1	37	71	33.7072
)))((((((....................)))))	chr14:50058874-50059097(-)$1	1	136	170	32.4816
..(((((.........................))	chr11:33025699-33025932(-)$1	1	129	163	33.9064
...((((((..................)))))).	chr9:19378749-19378959(-)$1	1	164	198	32.1069
.(((..((....................))..))	chr14:90051965-90052203(+)$1	1	126	160	30.9360
)))).((((...................))))))	chr11:118841148-118841377(+)$1	1	27	61	28.1828
.((((..((.....................))..	chrX:64905672-64905882(+)$1	1	107	141	32.0670
.....(((((..................))))).	chr12:103872546-103872772(-)$1	1	67	101	26.9508
(.(((((........................)))	chr18:47397868-47398097(-)$1	1	24	58	33.5740
............................)))).)	chr6:151619956-151620167(-)$1	1	50	84	33.4810
(.(.((((....................)))).)	chr11:118706618-118706826(+)$1	1	113	147	33.2111
((...((((................))))))).)	chr2:200647953-200648211(-)$1	1	67	101	24.2130
(((((((.(....................)))))	chr3:15888410-15888627(-)$1	1	139	173	33.0898
..(((((((...................))))))	chr14:31727715-31727948(-)$1	1	167	201	33.4208
..(((((((...................))))))	chr22:51108194-51108416(+)$1	1	127	161	33.4208
..(((((((.........................	chr2:171639644-171639879(+)$1	1	127	161	33.4948
))))(((((.....................))))	chrX:117048168-117048398(-)$1	1	51	85	33.5796
(((..((((....................)))).	chr6:74227976-74228204(-)$1	1	121	155	33.0599
((((((((((..................))))))	chr13:50482742-50482956(-)$1	1	20	54	29.0898
((((..(((.........................	chr15:30965895-30966136(+)$1	1	139	173	33.0072
(.(((.(((....................))).)	chr18:43793240-43793487(+)$1	1	29	63	33.7598
............................))))))	chr10:128256272-128256488(-)$1	1	37	71	33.7049
....(((((..................)))))..	chr7:148680792-148680999(+)$1	1	14	48	33.7072
..((((((.........................)	chr3:169962529-169962743(+)$1	1	129	163	33.4621
(.(((.......................))).))	chr3:101177334-101177569(+)$1	1	119	153	33.4361
(.............................))))	chr20:32971889-32972127(-)$1	1	144	178	33.7040
(....((((...................))))..	chr1:147802375-147802625(+)$1	1	184	218	33.6737
.(((.((((....................)))).	chr2:173422780-173423016(-)$1	1	164	198	33.0578
((..(((((...................)))))(	chr3:133361781-133362019(-)$1	1	118	152	30.4524

#PSSM
# : 0.17	! : 0.14	^ : 0.08	: : 0.08	c : 0.08	d : 0.07	" : 0.05	= : 0.05	g : 0.05	e : 0.03	i : 0.03	f : 0.01	( : 0.01	h : 0.01	C : 0.01	F : 0.01	a : 0.01	H : 0.01	
# : 0.19	! : 0.14	[ : 0.12	^ : 0.10	c : 0.07	: : 0.05	d : 0.05	h : 0.03	= : 0.03	i : 0.03	g : 0.03	f : 0.01	( : 0.01	b : 0.01	e : 0.01	" : 0.01	F : 0.01	H : 0.01	
# : 0.17	c : 0.14	^ : 0.10	g : 0.10	: : 0.08	d : 0.07	e : 0.05	f : 0.03	b : 0.03	= : 0.03	a : 0.03	i : 0.03	( : 0.01	h : 0.01	! : 0.01	" : 0.01	F : 0.01	
# : 0.14	f : 0.12	c : 0.12	^ : 0.10	g : 0.08	: : 0.07	d : 0.07	e : 0.05	! : 0.03	= : 0.03	[ : 0.03	i : 0.03	( : 0.01	h : 0.01	b : 0.01	" : 0.01	F : 0.01	
e : 0.22	f : 0.15	^ : 0.10	! : 0.08	d : 0.08	c : 0.08	g : 0.07	: : 0.05	i : 0.03	( : 0.01	h : 0.01	" : 0.01	# : 0.01	[ : 0.01	
e : 0.26	d : 0.17	^ : 0.15	f : 0.14	! : 0.08	g : 0.07	[ : 0.03	i : 0.03	c : 0.01	h : 0.01	
e : 0.26	d : 0.17	^ : 0.15	f : 0.14	c : 0.07	g : 0.07	! : 0.03	i : 0.03	h : 0.01	[ : 0.01	b : 0.01	
e : 0.21	^ : 0.19	d : 0.17	f : 0.14	c : 0.07	g : 0.07	b : 0.05	[ : 0.05	h : 0.01	a : 0.01	
^ : 0.28	e : 0.21	d : 0.14	f : 0.12	g : 0.07	b : 0.05	c : 0.05	a : 0.03	h : 0.01	[ : 0.01	
^ : 0.78	y : 0.05	e : 0.03	f : 0.03	x : 0.03	b : 0.01	d : 0.01	c : 0.01	
^ : 0.84	y : 0.10	x : 0.03	c : 0.01	
^ : 0.84	y : 0.10	x : 0.03	c : 0.01	
^ : 0.84	y : 0.12	x : 0.03	
^ : 0.84	y : 0.12	x : 0.03	
^ : 0.84	y : 0.12	x : 0.03	
^ : 0.84	y : 0.12	x : 0.03	
^ : 0.84	y : 0.12	x : 0.03	
^ : 0.84	y : 0.12	x : 0.03	
^ : 0.84	y : 0.12	x : 0.03	
^ : 0.84	y : 0.12	x : 0.03	
^ : 0.84	y : 0.12	x : 0.03	
^ : 0.84	y : 0.12	x : 0.03	
^ : 0.84	y : 0.12	x : 0.03	
^ : 0.84	y : 0.12	x : 0.03	
^ : 0.84	y : 0.12	e : 0.03	
^ : 0.84	y : 0.07	e : 0.03	c : 0.01	f : 0.01	d : 0.01	
^ : 0.84	e : 0.05	d : 0.03	b : 0.01	c : 0.01	y : 0.01	f : 0.01	
^ : 0.71	e : 0.14	f : 0.05	d : 0.03	b : 0.01	c : 0.01	y : 0.01	
^ : 0.36	e : 0.19	g : 0.12	d : 0.12	f : 0.08	c : 0.05	h : 0.01	] : 0.01	b : 0.01	
^ : 0.21	f : 0.15	e : 0.15	d : 0.14	g : 0.12	c : 0.10	] : 0.03	a : 0.03	h : 0.01	b : 0.01	
e : 0.21	f : 0.15	g : 0.15	^ : 0.12	d : 0.12	c : 0.10	b : 0.03	i : 0.03	h : 0.01	4 : 0.01	2 : 0.01	
e : 0.21	g : 0.15	f : 0.14	d : 0.14	^ : 0.08	c : 0.05	2 : 0.03	b : 0.03	] : 0.03	i : 0.03	9 : 0.01	h : 0.01	4 : 0.01	a : 0.01	
g : 0.17	f : 0.14	e : 0.14	] : 0.12	3 : 0.10	d : 0.07	^ : 0.07	2 : 0.05	i : 0.03	9 : 0.01	h : 0.01	4 : 0.01	c : 0.01	D : 0.01	
g : 0.17	f : 0.15	3 : 0.14	e : 0.08	d : 0.07	c : 0.07	] : 0.05	2 : 0.03	a : 0.03	i : 0.03	^ : 0.03	9 : 0.01	b : 0.01	h : 0.01	4 : 0.01	D : 0.01	: : 0.01	

#score	1769.9747417249384
#seq	57
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF854NXI_HNRNPU_UTR_m1_run1.txt

#BEAR
fffffdddd!!cccooooooccc4444dddd]ffffff]	chr19:50168075-50168374(-)$1	299	238	277	18.1667
eeee!!ccc####cccmmmmccc4444ccc]eeeee]bb	chr11:10529746-10529978(-)$1	232	112	151	16.3804
dddd[ffffff"""aooooooa22ffffff]dddd22ff	chr6:52227143-52227425(+)$1	282	119	158	19.4844
ccc!!a[gggggggaooooooa]ggggggga22cccggg	chr19:41770842-41771100(+)$1	258	37	76	17.6554
dddd[dddd[bb!!aooooooa22bb]dddd]ddddhhh	chr19:56146707-56146980(+)$1	273	102	141	20.1685
ffffffa"""dddd!!ammmma22dddd333a]ffffff	chr3:49045342-49045634(+)$1	292	219	258	16.3948

#otherMatches

#Seq PSSM
CGGUCGCGCCCAGGAAAUGCCCUAUACGCGCAGGCCGGA	chr19:50168075-50168374(-)$1	299	238	277	18.1667
CCGCCUGCCCAGUGACAUGCGUUUaacggccgcgguacc	chr11:10529746-10529978(-)$1	232	112	151	16.3804
AUCCAAGCCCGGAAGGGGGGACGACGGGUUAGGAUGCUG	chr6:52227143-52227425(+)$1	282	119	158	19.4844
CCUGACACUCAGUGCAGGGGGGACACUGGGGGAGGGGCC	chr19:41770842-41771100(+)$1	258	37	76	17.6554
GUUUGGGCAGCCAGAGGGAGGUGAGGGUGCUGGAGCGGG	chr19:56146707-56146980(+)$1	273	102	141	20.1685
AGGGGGCGGUGCCCGGGGAAGCAGGGGCUGAGACCCCCU	chr3:49045342-49045634(+)$1	292	219	258	16.3948

#DB
(((((((((..(((......)))....)))).)))))).	chr19:50168075-50168374(-)$1	1	238	277	18.1667
((((..(((....(((....)))....))).))))).))	chr11:10529746-10529978(-)$1	1	112	151	16.3804
((((.((((((...(......)..)))))).))))..))	chr6:52227143-52227425(+)$1	1	119	158	19.4844
(((..(.((((((((......).))))))))..)))(((	chr19:41770842-41771100(+)$1	1	37	76	17.6554
((((.((((.((..(......)..)).)))).))))(((	chr19:56146707-56146980(+)$1	1	102	141	20.1685
(((((((...((((..(....)..))))...).))))))	chr3:49045342-49045634(+)$1	1	219	258	16.3948

#PSSM
f : 0.33	d : 0.33	e : 0.16	c : 0.16	
f : 0.33	d : 0.33	e : 0.16	c : 0.16	
f : 0.33	d : 0.33	e : 0.16	c : 0.16	
f : 0.33	d : 0.33	e : 0.16	! : 0.16	
f : 0.33	! : 0.33	[ : 0.33	
d : 0.33	f : 0.33	! : 0.16	a : 0.16	
d : 0.33	c : 0.16	f : 0.16	[ : 0.16	a : 0.16	
d : 0.33	c : 0.16	f : 0.16	g : 0.16	" : 0.16	
d : 0.33	c : 0.16	f : 0.16	g : 0.16	" : 0.16	
! : 0.16	# : 0.16	f : 0.16	g : 0.16	[ : 0.16	" : 0.16	
! : 0.16	# : 0.16	f : 0.16	g : 0.16	b : 0.16	d : 0.16	
c : 0.16	# : 0.16	" : 0.16	g : 0.16	b : 0.16	d : 0.16	
c : 0.16	# : 0.16	" : 0.16	g : 0.16	! : 0.16	d : 0.16	
c : 0.33	" : 0.16	g : 0.16	! : 0.16	d : 0.16	
a : 0.50	o : 0.16	c : 0.16	! : 0.16	
o : 0.66	c : 0.16	! : 0.16	
o : 0.66	m : 0.16	a : 0.16	
o : 0.66	m : 0.33	
o : 0.66	m : 0.33	
o : 0.66	m : 0.33	
o : 0.50	c : 0.33	m : 0.16	
a : 0.66	c : 0.33	
2 : 0.50	c : 0.33	] : 0.16	
2 : 0.50	4 : 0.33	g : 0.16	
4 : 0.33	f : 0.16	g : 0.16	b : 0.16	d : 0.16	
4 : 0.33	f : 0.16	g : 0.16	b : 0.16	d : 0.16	
4 : 0.33	f : 0.16	g : 0.16	] : 0.16	d : 0.16	
d : 0.50	c : 0.16	f : 0.16	g : 0.16	
d : 0.33	c : 0.16	f : 0.16	g : 0.16	3 : 0.16	
d : 0.33	c : 0.16	f : 0.16	g : 0.16	3 : 0.16	
d : 0.33	] : 0.33	a : 0.16	3 : 0.16	
] : 0.33	e : 0.16	d : 0.16	2 : 0.16	a : 0.16	
d : 0.33	f : 0.16	e : 0.16	2 : 0.16	] : 0.16	
f : 0.33	d : 0.33	e : 0.16	c : 0.16	
f : 0.33	d : 0.33	e : 0.16	c : 0.16	
f : 0.33	e : 0.16	2 : 0.16	c : 0.16	d : 0.16	
f : 0.33	] : 0.16	2 : 0.16	g : 0.16	h : 0.16	
f : 0.50	b : 0.16	g : 0.16	h : 0.16	
f : 0.33	] : 0.16	b : 0.16	g : 0.16	h : 0.16	

#score	108.25056942410001
#seq	6
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_transcript_m2_run1.txt

#BEAR
bb####eeeee"""aooooooa333eeeee22bb]bb	chr11:14535100-14535327(-)$1	227	109	146	13.7541
:===========!!aooooooa22===========::	chr17:12011005-12011232(+)$1	227	34	71	14.5092
b####gggggggrrrrrrrrrggggggg333bb333f	chrX:154464408-154464624(+)$1	216	91	128	11.8354
d[a[ccc[bb[ddddoooooodddd]bbccc]a]ddd	chr2:131808611-131808860(-)$1	249	202	239	15.2004
d$$$$$============lll============333d	chr12:46315023-46315280(-)$1	257	153	190	13.7986
bb[bbccc[ccc[bboooooobb]ccc]ccc]bb]bb	chr2:70486459-70486730(+)$1	271	43	80	13.2929
dbb[ddddddddcccooooooccc333dddd]dddd]	chr12:116675189-116675449(-)$1	260	49	86	14.4189
$$ccc[iiiiiiiiiooooooiiiiiiiii]ccc444	chr5:68661304-68661616(-)$1	312	160	197	16.0365
d"""ffffff!!cccoooooocccffffff333dddd	chr4:153717870-153718113(+)$1	243	192	229	15.2015
==========zzzzzzzzzzzzzzzzz==========	chr9:4711720-4712008(-)$1	288	233	270	10.7744
ee!!ccc[a!!ddddoooooodddd22a]ccceeeee	chr11:18418351-18418598(+)$1	247	164	201	15.5238
[bb"""a[ccc[aooooooa]ccca333bb]a22ccc	chr12:76442927-76443130(-)$1	203	110	147	14.8630
[dddd####ffffffooooooffffffdddda]dddd	chr10:51594181-51594467(-)$1	286	126	163	12.5689
!!eeeee[bb!!cccoooooocccbbeeeee333ggg	chr9:33110740-33111018(-)$1	278	145	182	14.6239
:iiiiiiiii[cccrrrrrrrrrccc]iiiiiiiii:	chr3:10011314-10011575(-)$1	261	183	220	11.3607
gggcccbbccc[bboooooobbccc333bb22ccc33	chr6:35437183-35437406(+)$1	223	19	56	14.0861
G:==========cccooooooccc4444=========	chr11:116658137-116658388(-)$1	251	211	248	17.0943
eeeee!!ccc!!cccoooooocccccc22eeeee:FF	chr22:19163901-19164107(-)$1	206	45	82	12.9769
eeccc[a[bb[ddddoooooodddd4444bb]a]ccc	chr8:142416299-142416559(+)$1	260	137	174	15.9904
ggggggg!!ddddaooooooa]dddd22gggggggcc	chr2:187371337-187371611(+)$1	274	50	87	14.3586
ccccc!!eeeee[bboooooobbeeeee]ccc]cccD	chr19:1980996-1981313(+)$1	317	130	167	13.3100
"ccc[ccc####cccooooooccc4444ccc]ccc33	chr8:19689438-19689688(+)$1	250	153	190	18.0063
ccc!!ccc"""ddddoooooodddd333ccc]ccc::	chr3:53260670-53260882(-)$1	212	27	64	16.0149
====####ccc!!bboooooobb55555ccc4444==	chr3:150459939-150460186(-)$1	247	87	124	13.4449
c"""ccc!!ddddddddmmmmdddd]dddd333cccc	chr3:38049640-38049885(-)$1	245	137	174	12.4953
ccccc[a[ccc[a[cccmmmmccc]a]ccc]a]ccc]	chr12:27181165-27181444(+)$1	279	216	253	12.7971
hh[ccc"""ffffffooooooffffff4444ccc666	chr12:56553762-56554011(+)$1	249	115	152	13.3424
[ggggggg[bb[cccooooooccc22bb]gggggggb	chr11:3062030-3062314(-)$1	284	176	213	15.1070
c"""dddd[dddd[aooooooa]dddd]dddd333cc	chr22:22274437-22274716(-)$1	279	115	152	14.7373
[a[ccc[a[a[ddddoooooodddda]a]cccaccc3	chr1:224592059-224592348(-)$1	289	145	182	16.9136
c####eeeee####ccclllccc4444eeeee]ccc3	chr17:80201209-80201509(-)$1	300	183	220	12.4896
cc"""ccc####ddddmmmmdddd4444ccc22ccc2	chr8:67026398-67026629(+)$1	231	140	177	13.2974
[bbccc!!a[eeeeeooooooeeeee]a22ccc]bb]	chr3:150263387-150263661(-)$1	274	19	56	13.7155
ee[ccc[bb[cccddddllldddd333ccc]bb]ccc	chr11:62327151-62327356(-)$1	205	55	92	12.4331
dddd!!dddd[ddddoooooodddddddd333ddddc	chr10:51580532-51580750(+)$1	218	100	137	14.0926
d!!bb[ccc"""cccooooooccc333ccc]bb22dd	chr2:73471702-73471918(+)$1	216	133	170	16.5997
ccc"""iiiiiiiiiooooooiiiiiiiii]ccc:::	chr7:32526533-32526820(-)$1	287	114	151	14.0447
ggggggg[ddddddddmmmmdddd333dddd]ggggg	chr16:9201165-9201487(+)$1	322	55	92	11.4342
d!!ccc[dddd[cccoooooocccdddd333cccddd	chr6:30690620-30690847(+)$1	227	119	156	15.8927
====$$$$$ddddqqqqqqqqdddd4444========	chr3:195781850-195782086(-)$1	236	158	195	11.3729
cccccc"""ffffffooooooffffffccc]ccc]cc	chr8:124195079-124195347(+)$1	268	180	217	14.6566
d"""==========rrrrrrrrr==========dddd	chr12:7079548-7079793(-)$1	245	207	244	13.4228
[gggggggccc[cccnnnnnccc]ccc]ggggggg]b	chr5:170815358-170815604(+)$1	246	205	242	12.1000
:ccc"""ccc!!ddddnnnnndddd]ccc333cccdd	chr15:83205429-83205733(-)$1	304	30	67	12.8405
ccc$$$$$gggggggooooooggggggg]ccc333bb	chr12:56577542-56577788(-)$1	246	51	88	14.8826
==========!!cccooooooccc333==========	chr20:62663175-62663390(+)$1	215	80	117	19.2216
===========[ddddnnnnndddd]===========	chr11:65824231-65824497(+)$1	266	6	43	14.3501
#eeeee[dddd[cccooooooccc]ddddeeeee333	chr2:74650911-74651188(+)$1	277	53	90	14.0154
"""bb"""ccc!!ddddllldddd22ccc]bbccc22	chr11:94908630-94908902(-)$1	272	43	80	12.1246

#otherMatches

#Seq PSSM
UGUCCAUCUGCUAACUAUUUUGACUGCAGAGCCAUGU	chr11:14535100-14535327(-)$1	227	109	146	13.7541
CCAUUUUAAGUAAAGGCAAGGUGAUAUUUAAGAUGUA	chr17:12011005-12011232(+)$1	227	34	71	14.5092
CUCUCUUCAGGCUAAUGUAAUGCUUGAAUAUGAUAUU	chrX:154464408-154464624(+)$1	216	91	128	11.8354
UGCGUUUGCUGGCAGGGUUUAUUGUGGGAGAGGAAUU	chr2:131808611-131808860(-)$1	249	202	239	15.2004
UGGCAGUUCAAAGUCUUUGUUGAAGACUUUGAGGAAA	chr12:46315023-46315280(-)$1	257	153	190	13.7986
GCCGGAAUUGGUGGCACUUCAGCAGCCUAUUACCUGC	chr2:70486459-70486730(+)$1	271	43	80	13.2929
CCGCUGUCUGCAAGCUAACCUGCUUUGUGUAUGGCGU	chr12:116675189-116675449(-)$1	260	49	86	14.4189
AAUCAGAUGUUGGAGUUUGCCUUCCGAUAUGUGACCA	chr5:68661304-68661616(-)$1	312	160	197	16.0365
CUUUAUAUAUUAGCCUUUUAUGGUGUAUGUUGCGAAU	chr4:153717870-153718113(+)$1	243	192	229	15.2015
GCAGCCAUUUAAAAAUUGGAAUCUAAAGGAUGGUUGC	chr9:4711720-4712008(-)$1	288	233	270	10.7744
GUAAGUGAGAGUCUACCACACUGGAAGCCCAUACCUU	chr11:18418351-18418598(+)$1	247	164	201	15.5238
AAGAAGGAGAUGAGGAAAAUGAUCCAGACUAUGACCC	chr12:76442927-76443130(-)$1	203	110	147	14.8630
AGAUUCCUGGAGGGGGAGUGGCCCUUUAAUCCAUCAG	chr10:51594181-51594467(-)$1	286	126	163	12.5689
AGCCUGGACAGGGUCUCUGCUGACUGCCAGGGGCGGG	chr9:33110740-33111018(-)$1	278	145	182	14.6239
UCACCUUUCAAAGCUGCAGCAAUGCUCUGAAAGGUGU	chr3:10011314-10011575(-)$1	261	183	220	11.3607
GGACCAGCAGCACUGUGACGAGGCUAAGGCCGUGGAU	chr6:35437183-35437406(+)$1	223	19	56	14.0861
GUACCUCAGUAUUCUAGAGAGAGAUUCGGUACUGGGG	chr11:116658137-116658388(-)$1	251	211	248	17.0943
GGGGGACCAGGCCAGAGCUAGCUGCUGAGCCCCUGCC	chr22:19163901-19164107(-)$1	206	45	82	12.9769
GAGGCCUGUCCGUGCCCUGAAGCACUUCUGAGAAGCC	chr8:142416299-142416559(+)$1	260	137	174	15.9904
AAAGAAAACUGUUCUUAUUUGUAACAACUUUCUUUUC	chr2:187371337-187371611(+)$1	274	50	87	14.3586
GCCCUGGACUGGCGGGCGGUUCCCCAGUGGGGUGCCC	chr19:1980996-1981313(+)$1	317	130	167	13.3100
AUCUUCCUCACUGAUAUGAUCAUCUAUCAGGUAGAGU	chr8:19689438-19689688(+)$1	250	153	190	18.0063
AGCCCCUGGACAGAAAACUCAUUCUCGACAGCGCUCG	chr3:53260670-53260882(-)$1	212	27	64	16.0149
UGGGAACCGGCGGAGAUUGACCUGGGAGGCCACGCCC	chr3:150459939-150460186(-)$1	247	87	124	13.4449
GACUGCUGUCAUCACCAACAAUGGUAGGUGCUGGGCC	chr3:38049640-38049885(-)$1	245	137	174	12.4953
UCCAGACUCAUAGCAUCAGUGGAUACCAUGUGGCUGA	chr12:27181165-27181444(+)$1	279	216	253	12.7971
GAAGGAAAUGGCACCGUCAUGGGUGCUGAAAUCCGGC	chr12:56553762-56554011(+)$1	249	115	152	13.3424
UGGGGCACGCCAGGUAGGUCCACCGCGGGGUGUCCCU	chr11:3062030-3062314(-)$1	284	176	213	15.1070
CGGCGUGUCCUGGGGAGAUGCUGCCAGCACACAGGGG	chr22:22274437-22274716(-)$1	279	115	152	14.7373
AGUCCAGAUGACAACUAUCUUGUUGCUUGUGGCCCAG	chr1:224592059-224592348(-)$1	289	145	182	16.9136
GCCCUGAGGUUCCCAGGAUGCCUUCUCGCCUCUCACU	chr17:80201209-80201509(-)$1	300	183	220	12.4896
CCCAAACUAGAGCUGAAAAGUCAGACGAAGUCAGGUG	chr8:67026398-67026629(+)$1	231	140	177	13.2974
GACCGGCGUGCAGGCGUGGGAGCCUGGGGUCCGAGUG	chr3:150263387-150263661(-)$1	274	19	56	13.7155
AGAUUGGCAGGUGGACUACGAGUCAUACACAUGGCGG	chr11:62327151-62327356(-)$1	205	55	92	12.4331
GGUGGACCUUAUUUAUCAGCUUAAAGAGGAGACACUU	chr10:51580532-51580750(+)$1	218	100	137	14.0926
CCCUCGAGGUAAGCCUGCUGUGGCCUUCCUAGACAGC	chr2:73471702-73471918(+)$1	216	133	170	16.5997
CUGGAAAAAGAAGAAAAGAGCUUCUUCUUUGCAGAUG	chr7:32526533-32526820(-)$1	287	114	151	14.0447
UGUGGAAGGUCUUCUGAGAGCAGAAAGGGAUGUUUCA	chr16:9201165-9201487(+)$1	322	55	92	11.4342
GGACCAUGGACUCUGUUCGCUCAGGUCCUUUUGGCCA	chr6:30690620-30690847(+)$1	227	119	156	15.8927
UUUUUAUUUUGCUGAAUGUCAAGUAUUUUGAAAUGUG	chr3:195781850-195782086(-)$1	236	158	195	11.3729
GCCAGGAAGGCGAGGUGGACUUCUUGUCCUCGGUGGA	chr8:124195079-124195347(+)$1	268	180	217	14.6566
UUCACCGGUGAGCAACCUCCGCCUGCUCGCCGGACGC	chr12:7079548-7079793(-)$1	245	207	244	13.4228
GCAACCGCUGGGAGCACGUGGUUGCCACGUGGUUGGG	chr5:170815358-170815604(+)$1	246	205	242	12.1000
UGUGUUUUCUUCUGGGGUCCACUCACAGAUCUCACCA	chr15:83205429-83205733(-)$1	304	30	67	12.8405
CCCUUCUCUUCCUCUAUCCCCAGAGGAAUGGGUACGA	chr12:56577542-56577788(-)$1	246	51	88	14.8826
CUUCUGCUGGAACAGGCUGUUUUGGAGUCAGCGGAAG	chr20:62663175-62663390(+)$1	215	80	117	19.2216
GAAUGCAUUUGCCAGGGGCUGCCUGCCAAAUGCGUUU	chr11:65824231-65824497(+)$1	266	6	43	14.3501
ACUGGUUCUGGAUACAGGAACGUGGUCAGGCCGGGUG	chr2:74650911-74651188(+)$1	277	53	90	14.0154
AAACUAAAUAUUUUGAUUUUGUCAUUAUAAAGCUAUU	chr11:94908630-94908902(-)$1	272	43	80	12.1246

#DB
((....(((((...(......)...)))))..)).))	chr11:14535100-14535327(-)$1	1	109	146	13.7541
.(((((((((((..(......)..)))))))))))..	chr17:12011005-12011232(+)$1	1	34	71	14.5092
(....(((((((.........)))))))...))...)	chrX:154464408-154464624(+)$1	1	91	128	11.8354
(.(.(((.((.((((......)))).))))).).)))	chr2:131808611-131808860(-)$1	1	202	239	15.2004
(.....((((((((((((...))))))))))))...)	chr12:46315023-46315280(-)$1	1	153	190	13.7986
((.(((((.(((.((......)).))).))).)).))	chr2:70486459-70486730(+)$1	1	43	80	13.2929
(((.(((((((((((......)))...)))).)))).	chr12:116675189-116675449(-)$1	1	49	86	14.4189
..(((.(((((((((......))))))))).)))...	chr5:68661304-68661616(-)$1	1	160	197	16.0365
(...((((((..(((......)))))))))...))))	chr4:153717870-153718113(+)$1	1	192	229	15.2015
((((((((((.................))))))))))	chr9:4711720-4712008(-)$1	1	233	270	10.7744
((..(((.(..((((......))))..).))))))))	chr11:18418351-18418598(+)$1	1	164	201	15.5238
.((...(.(((.(......).))))...)).)..)))	chr12:76442927-76443130(-)$1	1	110	147	14.8630
.((((....((((((......))))))))))).))))	chr10:51594181-51594467(-)$1	1	126	163	12.5689
..(((((.((..(((......))))))))))...)))	chr9:33110740-33111018(-)$1	1	145	182	14.6239
.(((((((((.(((.........))).))))))))).	chr3:10011314-10011575(-)$1	1	183	220	11.3607
(((((((((((.((......)))))...))..)))..	chr6:35437183-35437406(+)$1	1	19	56	14.0861
).(((((((((((((......)))....)))))))))	chr11:116658137-116658388(-)$1	1	211	248	17.0943
(((((..(((..(((......))))))..))))).((	chr22:19163901-19164107(-)$1	1	45	82	12.9769
))(((.(.((.((((......))))....)).).)))	chr8:142416299-142416559(+)$1	1	137	174	15.9904
(((((((..(((((......).))))..)))))))))	chr2:187371337-187371611(+)$1	1	50	87	14.3586
(((((..(((((.((......))))))).))).))))	chr19:1980996-1981313(+)$1	1	130	167	13.3100
.(((.(((....(((......)))....))).)))..	chr8:19689438-19689688(+)$1	1	153	190	18.0063
(((..(((...((((......))))...))).)))..	chr3:53260670-53260882(-)$1	1	27	64	16.0149
((((....(((..((......)).....)))....))	chr3:150459939-150460186(-)$1	1	87	124	13.4449
(...(((..((((((((....)))).))))...))))	chr3:38049640-38049885(-)$1	1	137	174	12.4953
(((((.(.(((.(.(((....))).).))).).))).	chr12:27181165-27181444(+)$1	1	216	253	12.7971
((.(((...((((((......))))))....)))...	chr12:56553762-56554011(+)$1	1	115	152	13.3424
.(((((((.((.(((......)))..)).))))))))	chr11:3062030-3062314(-)$1	1	176	213	15.1070
(...((((.((((.(......).)))).))))...))	chr22:22274437-22274716(-)$1	1	115	152	14.7373
.(.(((.(.(.((((......))))).).))))))).	chr1:224592059-224592348(-)$1	1	145	182	16.9136
(....(((((....(((...)))....))))).))).	chr17:80201209-80201509(-)$1	1	183	220	12.4896
((...(((....((((....))))....)))..))).	chr8:67026398-67026629(+)$1	1	140	177	13.2974
.(((((..(.(((((......))))).)..))).)).	chr3:150263387-150263661(-)$1	1	19	56	13.7155
((.(((.((.(((((((...))))...))).)).)))	chr11:62327151-62327356(-)$1	1	55	92	12.4331
((((..((((.((((......))))))))...)))))	chr10:51580532-51580750(+)$1	1	100	137	14.0926
(..((.(((...(((......)))...))).))..))	chr2:73471702-73471918(+)$1	1	133	170	16.5997
(((...(((((((((......))))))))).)))...	chr7:32526533-32526820(-)$1	1	114	151	14.0447
(((((((.((((((((....))))...)))).)))))	chr16:9201165-9201487(+)$1	1	55	92	11.4342
(..(((.((((.(((......)))))))...))))))	chr6:30690620-30690847(+)$1	1	119	156	15.8927
((((.....((((........))))....))))))))	chr3:195781850-195782086(-)$1	1	158	195	11.3729
((((((...((((((......))))))))).))).))	chr8:124195079-124195347(+)$1	1	180	217	14.6566
(...((((((((((.........))))))))))))))	chr12:7079548-7079793(-)$1	1	207	244	13.4228
.((((((((((.(((.....))).))).))))))).)	chr5:170815358-170815604(+)$1	1	205	242	12.1000
.(((...(((..((((.....)))).)))...)))((	chr15:83205429-83205733(-)$1	1	30	67	12.8405
(((.....(((((((......))))))).)))...))	chr12:56577542-56577788(-)$1	1	51	88	14.8826
((((((((((..(((......)))...))))))))))	chr20:62663175-62663390(+)$1	1	80	117	19.2216
(((((((((((.((((.....)))).)))))))))))	chr11:65824231-65824497(+)$1	1	6	43	14.3501
.(((((.((((.(((......))).)))))))))...	chr2:74650911-74651188(+)$1	1	53	90	14.0154
...((...(((..((((...))))..))).)))))..	chr11:94908630-94908902(-)$1	1	43	80	12.1246

#PSSM
c : 0.20	d : 0.16	[ : 0.12	= : 0.10	e : 0.08	b : 0.06	: : 0.06	g : 0.06	" : 0.04	$ : 0.02	! : 0.02	G : 0.02	h : 0.02	# : 0.02	
c : 0.18	= : 0.12	b : 0.10	" : 0.10	e : 0.10	g : 0.10	! : 0.06	# : 0.04	$ : 0.04	d : 0.04	[ : 0.02	i : 0.02	: : 0.02	h : 0.02	a : 0.02	
c : 0.20	= : 0.14	" : 0.12	g : 0.10	[ : 0.08	# : 0.06	b : 0.06	! : 0.06	e : 0.06	d : 0.04	a : 0.02	$ : 0.02	i : 0.02	
c : 0.26	= : 0.14	" : 0.14	g : 0.08	# : 0.06	b : 0.06	e : 0.06	[ : 0.04	$ : 0.04	! : 0.04	d : 0.04	i : 0.02	
c : 0.28	= : 0.12	# : 0.08	" : 0.08	g : 0.08	$ : 0.06	b : 0.06	d : 0.06	e : 0.06	! : 0.04	f : 0.02	i : 0.02	[ : 0.02	
c : 0.28	= : 0.12	g : 0.10	[ : 0.08	" : 0.08	# : 0.06	$ : 0.06	e : 0.06	! : 0.06	d : 0.04	f : 0.02	i : 0.02	
c : 0.16	= : 0.14	g : 0.10	" : 0.08	[ : 0.08	e : 0.06	d : 0.06	i : 0.06	a : 0.06	! : 0.06	# : 0.04	$ : 0.04	f : 0.02	b : 0.02	
= : 0.14	[ : 0.14	c : 0.14	d : 0.10	e : 0.06	g : 0.06	i : 0.06	! : 0.06	" : 0.06	# : 0.04	b : 0.04	$ : 0.04	f : 0.02	a : 0.02	
c : 0.18	= : 0.14	d : 0.10	b : 0.08	[ : 0.08	e : 0.06	i : 0.06	# : 0.06	" : 0.06	g : 0.04	a : 0.04	! : 0.04	f : 0.02	$ : 0.02	
c : 0.18	d : 0.18	= : 0.14	b : 0.08	f : 0.08	e : 0.06	i : 0.06	g : 0.04	# : 0.04	" : 0.04	[ : 0.04	! : 0.02	a : 0.02	
c : 0.16	d : 0.16	! : 0.12	= : 0.10	[ : 0.10	e : 0.06	f : 0.06	# : 0.06	g : 0.04	i : 0.04	" : 0.04	z : 0.02	b : 0.02	
d : 0.24	[ : 0.16	! : 0.14	= : 0.08	c : 0.06	f : 0.06	# : 0.06	" : 0.04	g : 0.04	i : 0.04	e : 0.04	z : 0.02	
d : 0.28	c : 0.28	! : 0.06	f : 0.06	= : 0.04	[ : 0.04	i : 0.04	a : 0.04	" : 0.02	r : 0.02	z : 0.02	b : 0.02	# : 0.02	e : 0.02	g : 0.02	
d : 0.26	c : 0.26	b : 0.08	f : 0.06	= : 0.04	i : 0.04	[ : 0.04	" : 0.02	! : 0.02	r : 0.02	z : 0.02	o : 0.02	a : 0.02	# : 0.02	e : 0.02	q : 0.02	g : 0.02	
c : 0.28	d : 0.26	a : 0.06	r : 0.06	b : 0.06	o : 0.06	f : 0.06	i : 0.04	= : 0.02	z : 0.02	e : 0.02	q : 0.02	g : 0.02	
o : 0.67	d : 0.14	r : 0.06	c : 0.04	= : 0.02	z : 0.02	q : 0.02	n : 0.02	
o : 0.67	r : 0.06	d : 0.06	n : 0.06	c : 0.04	m : 0.04	= : 0.02	z : 0.02	q : 0.02	
o : 0.67	m : 0.08	r : 0.06	l : 0.06	n : 0.06	= : 0.02	z : 0.02	q : 0.02	
o : 0.67	l : 0.08	m : 0.08	r : 0.06	n : 0.06	z : 0.02	q : 0.02	
o : 0.65	l : 0.08	m : 0.08	r : 0.06	n : 0.06	z : 0.02	a : 0.02	q : 0.02	
o : 0.61	d : 0.08	r : 0.06	m : 0.04	c : 0.04	n : 0.04	l : 0.02	z : 0.02	] : 0.02	b : 0.02	a : 0.02	q : 0.02	
c : 0.30	d : 0.28	b : 0.08	a : 0.06	f : 0.06	g : 0.04	i : 0.04	r : 0.04	= : 0.02	z : 0.02	] : 0.02	e : 0.02	
c : 0.32	d : 0.30	b : 0.06	f : 0.06	g : 0.04	i : 0.04	r : 0.04	3 : 0.02	2 : 0.02	= : 0.02	z : 0.02	] : 0.02	e : 0.02	
d : 0.32	c : 0.30	f : 0.06	g : 0.04	= : 0.04	] : 0.04	i : 0.04	e : 0.04	3 : 0.02	2 : 0.02	z : 0.02	5 : 0.02	4 : 0.02	
d : 0.26	3 : 0.12	c : 0.10	f : 0.08	4 : 0.08	= : 0.06	g : 0.04	i : 0.04	e : 0.04	] : 0.04	2 : 0.04	z : 0.02	a : 0.02	b : 0.02	5 : 0.02	
3 : 0.16	4 : 0.12	d : 0.10	] : 0.08	c : 0.08	f : 0.08	e : 0.06	= : 0.06	2 : 0.06	g : 0.04	i : 0.04	a : 0.04	z : 0.02	b : 0.02	5 : 0.02	
3 : 0.16	4 : 0.12	c : 0.10	d : 0.10	= : 0.08	f : 0.08	] : 0.08	e : 0.06	g : 0.04	b : 0.04	i : 0.04	2 : 0.04	z : 0.02	5 : 0.02	
d : 0.14	= : 0.12	4 : 0.12	c : 0.12	e : 0.08	] : 0.06	i : 0.06	a : 0.06	3 : 0.06	g : 0.04	b : 0.04	2 : 0.04	f : 0.02	5 : 0.02	
c : 0.24	= : 0.14	d : 0.14	] : 0.10	e : 0.06	i : 0.06	4 : 0.06	3 : 0.04	b : 0.04	2 : 0.04	g : 0.04	f : 0.02	
c : 0.28	= : 0.16	e : 0.10	d : 0.10	3 : 0.08	i : 0.06	b : 0.06	g : 0.06	f : 0.02	4 : 0.02	2 : 0.02	] : 0.02	
c : 0.22	= : 0.16	] : 0.14	3 : 0.12	d : 0.08	e : 0.08	g : 0.06	2 : 0.04	b : 0.04	i : 0.02	4 : 0.02	
c : 0.20	= : 0.16	] : 0.14	3 : 0.10	b : 0.08	2 : 0.06	a : 0.06	e : 0.06	g : 0.06	i : 0.02	4 : 0.02	d : 0.02	
c : 0.22	= : 0.16	b : 0.10	3 : 0.10	] : 0.08	g : 0.08	a : 0.06	e : 0.06	d : 0.04	2 : 0.04	i : 0.02	4 : 0.02	
c : 0.32	= : 0.12	3 : 0.10	d : 0.10	] : 0.08	g : 0.08	e : 0.06	b : 0.04	2 : 0.04	i : 0.02	4 : 0.02	
c : 0.28	d : 0.14	= : 0.12	3 : 0.10	g : 0.10	] : 0.06	4 : 0.04	: : 0.04	e : 0.02	i : 0.02	6 : 0.02	b : 0.02	2 : 0.02	
c : 0.24	d : 0.18	= : 0.12	3 : 0.10	b : 0.08	: : 0.06	g : 0.06	4 : 0.02	e : 0.02	i : 0.02	F : 0.02	6 : 0.02	] : 0.02	2 : 0.02	
d : 0.16	c : 0.16	= : 0.12	b : 0.10	3 : 0.10	: : 0.08	] : 0.06	g : 0.04	2 : 0.04	f : 0.02	4 : 0.02	e : 0.02	F : 0.02	D : 0.02	6 : 0.02	

#score	691.4265599975369
#seq	49
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_UTR_m3_run1.txt

#BEAR
cc!!dddd[bb!!bbcccmmmmccc]bb22bb]ddddc	chr22:19418924-19419268(-)$1	344	284	322	21.6750
e[dddd$$$$$ccc[cccmmmmcccccc22dddd]eee	chr9:100777588-100777836(+)$1	248	23	61	22.1238
e[a[dddd[a[eeeeennnnneeeeea]dddd]a]eee	chr1:1284370-1284623(-)$1	253	95	133	19.9591

#otherMatches

#Seq PSSM
CCGACCUGGGUCAACCACAAUGGUGAGUGCGCGCAGGG	chr22:19418924-19419268(-)$1	344	284	322	21.6750
CACUGUCCUAAAGUCAAUUUUUGUUACUGUACagagga	chr9:100777588-100777836(+)$1	248	23	61	22.1238
cgcaggcgggcgggcgggUAgcgccccgcguccgagcc	chr1:1284370-1284623(-)$1	253	95	133	19.9591

#DB
((..((((.((..(((((....))).))..)).)))))	chr22:19418924-19419268(-)$1	1	284	322	21.6750
(.((((.....(((.(((....))))))..)))).)))	chr9:100777588-100777836(+)$1	1	23	61	22.1238
(.(.((((.(.(((((.....)))))).)))).).)))	chr1:1284370-1284623(-)$1	1	95	133	19.9591

#PSSM
e : 0.66	c : 0.33	
[ : 0.66	c : 0.33	
! : 0.33	d : 0.33	a : 0.33	
! : 0.33	d : 0.33	[ : 0.33	
d : 1.00	
d : 1.00	
d : 0.66	$ : 0.33	
d : 0.66	$ : 0.33	
[ : 0.66	$ : 0.33	
b : 0.33	$ : 0.33	a : 0.33	
b : 0.33	$ : 0.33	[ : 0.33	
! : 0.33	c : 0.33	e : 0.33	
! : 0.33	c : 0.33	e : 0.33	
b : 0.33	c : 0.33	e : 0.33	
b : 0.33	[ : 0.33	e : 0.33	
c : 0.66	e : 0.33	
c : 0.66	n : 0.33	
c : 0.66	n : 0.33	
m : 0.66	n : 0.33	
m : 0.66	n : 0.33	
m : 0.66	n : 0.33	
m : 0.66	e : 0.33	
c : 0.66	e : 0.33	
c : 0.66	e : 0.33	
c : 0.66	e : 0.33	
] : 0.33	c : 0.33	e : 0.33	
b : 0.33	c : 0.33	a : 0.33	
b : 0.33	c : 0.33	] : 0.33	
2 : 0.66	d : 0.33	
2 : 0.66	d : 0.33	
d : 0.66	b : 0.33	
d : 0.66	b : 0.33	
] : 0.66	d : 0.33	
d : 0.66	a : 0.33	
] : 0.66	d : 0.33	
e : 0.66	d : 0.33	
e : 0.66	d : 0.33	
e : 0.66	c : 0.33	

#score	63.75805141353329
#seq	3
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_CDS_m2_run2.txt

#BEAR
ccc!!cccvvvvvvvvvvvvvccc22c	chr17:45299100-45299319(+)$1	219	126	153	23.1508
eeeeeyyyyyyyyyyyyyyyyeeeee:	chr17:1553852-1554106(-)$1	254	196	223	20.5019
cc!!ddddtttttttttttdddd22cc	chr21:35275677-35275971(-)$1	294	58	85	24.0865
iiiiiivvvvvvvvvvvvviiiiiiii	chr11:314937-315171(+)$1	234	122	149	22.2121
))))ddddtttttttttttdddd0000	chr12:57106186-57106437(-)$1	251	65	92	21.1566
gggg[ccctttttttttttcccggggg	chr19:18702868-18703140(+)$1	272	177	204	24.4901
ggggg[bbtttttttttttbb]ggggg	chr16:31202300-31202522(+)$1	222	171	198	23.1636
gggg[bbuuuuuuuuuuuubbgggggg	chr19:18652471-18652745(-)$1	274	127	154	22.6263
!!ffffffuuuuuuuuuuuuffffff3	chr11:5290763-5290973(-)$1	210	89	116	23.3230
dddd[ccctttttttttttccc]dddd	chr11:18424415-18424661(+)$1	246	199	226	23.3689
ddddddddvvvvvvvvvvvvvdddd::	chr1:52256476-52256759(-)$1	283	139	166	21.0710
:ffffffvvvvvvvvvvvvvffffff:	chr2:97541863-97542143(-)$1	280	74	101	20.6693
ffffyyyyyyyyyyyyyyyyffffff4	chr2:98263706-98263916(+)$1	210	77	104	20.8451
ddddddddtttttttttttdddd22dd	chr16:1374636-1374926(+)$1	290	76	103	23.1880
gggggg[auuuuuuuuuuuua]ggggg	chr17:34171673-34172062(+)$1	389	16	43	24.0578
[gggggggtttttttttttgggggggc	chr3:184052576-184052888(+)$1	312	173	200	23.9272
gg:eeeeeuuuuuuuuuuuueeeee::	chr19:39125566-39125851(+)$1	285	123	150	21.3450
ff[eeeeettttttttttteeeee]ff	chr6:31699986-31700224(-)$1	238	34	61	23.6837
ffffyyyyyyyyyyyyyyyyffffff4	chr2:98263716-98263953(+)$1	237	67	94	20.8451
!!eeeeeauuuuuuuuuuuua]eeeee	chr1:19585107-19585364(+)$1	257	82	109	23.9563
ddd!!cccyyyyyyyyyyyyyyyyccc	chr17:73034879-73035153(-)$1	274	69	96	20.8471
hha[ddddtttttttttttdddd]a]h	chr16:31201327-31201562(+)$1	235	75	102	23.6361
e::eeeeettttttttttteeeeeiii	chr7:54823371-54823583(-)$1	212	140	167	21.9860
::fffffftttttttttttffffff:b	chr22:42017892-42018187(+)$1	295	22	49	19.9430
========ttttttttttt========	chrX:12994307-12994581(+)$1	274	11	38	24.3749
$$$$ddddtttttttttttdddd4444	chrX:47445976-47446267(+)$1	291	169	196	23.7154
ff!!ddddtttttttttttdddd22ff	chr12:57038862-57039096(-)$1	234	44	71	23.7399
ccc!!cccwwwwwwwwwwwwwwccc22	chr6:33257570-33257797(+)$1	227	71	98	21.6281
%%%eeeeeuuuuuuuuuuuueeeee55	chr18:9126759-9127004(+)$1	245	147	174	20.9860
b[dddd[attttttttttta]ddddbb	chr2:232577061-232577327(+)$1	266	147	174	23.1919
&ddddccctttttttttttccc]dddd	chr5:1815863-1816080(+)$1	217	134	161	23.0349
!a[eeeeewwwwwwwwwwwwwweeeee	chr11:64084430-64084648(-)$1	218	125	152	21.7288
cc[eeeeewwwwwwwwwwwwwweeeee	chr10:106026953-106027276(+)$1	323	241	268	21.5669
ggggddddtttttttttttdddd]ggg	chr12:96259000-96259252(+)$1	252	88	115	24.4162
iiiiiiiiuuuuuuuuuuuuiiiiiii	chr7:100486062-100486351(+)$1	289	8	35	23.7489
"bb[ddddtttttttttttdddd]bb3	chr16:31202186-31202438(+)$1	252	131	158	23.8466
===[ddddtttttttttttdddd]===	chr7:54819920-54820218(-)$1	298	99	126	24.7246
%bb[dddduuuuuuuuuuuuddddbb5	chr10:105151912-105152140(-)$1	228	126	153	22.3219
!!ffffffuuuuuuuuuuuuffffff3	chr11:5290751-5290963(-)$1	212	79	106	23.3230
dd"""ccctttttttttttccc4444d	chr1:155290293-155290545(+)$1	252	75	102	23.8019
[bb[dddduuuuuuuuuuuudddd]bb	chr17:49232911-49233123(+)$1	212	46	73	23.5253
fff[ddddtttttttttttdddd]fff	chr3:195778848-195779112(-)$1	264	55	82	23.9515
======vvvvvvvvvvvvv========	chr19:4659848-4660105(-)$1	257	84	111	22.8308
ccc!!cccwwwwwwwwwwwwwwccc22	chr6:33257513-33257767(+)$1	254	128	155	21.6281
!bb[ddddwwwwwwwwwwwwwwdddd]	chr5:149827194-149827398(-)$1	204	42	69	21.5573
dddd[cccuuuuuuuuuuuucccdddd	chr2:101622707-101622978(+)$1	271	1	28	23.2574
gggg[cccwwwwwwwwwwwwwwcccgg	chr14:92583741-92584052(-)$1	311	213	240	21.8535
ggggggguuuuuuuuuuuuggggggg:	chr6:34385214-34385423(-)$1	209	1	28	22.4457
dd:eeeeevvvvvvvvvvvvveeeee:	chr5:159849261-159849510(+)$1	249	68	95	21.3046
!!ffffffuuuuuuuuuuuuffffff3	chr11:5290730-5290951(-)$1	221	67	94	23.3230
a!!eeeeevvvvvvvvvvvvveeeee2	chr12:6879052-6879265(+)$1	213	167	194	23.2574
####dddduuuuuuuuuuuudddd22d	chrX:153609263-153609529(+)$1	266	230	257	23.6493
gggg[bbuuuuuuuuuuuubbgggggg	chr19:18652545-18652802(-)$1	257	184	211	22.6263
gggggggvvvvvvvvvvvvvggggggg	chr6:75949916-75950174(-)$1	258	133	160	23.3102
dd[eeeeettttttttttteeeee]dd	chr3:14225336-14225622(+)$1	286	103	130	23.6566
eee[ddddtttttttttttdddd]eee	chr2:217069810-217070073(+)$1	263	76	103	23.8505
'eeeeevvvvvvvvvvvvveeeee888	chr8:145140916-145141167(+)$1	251	150	177	20.6908
[ccccccvvvvvvvvvvvvvccc]ccc	chr19:55648400-55648674(-)$1	274	122	149	23.4136
DDDeeeeettttttttttteeeeeddd	chr2:176043788-176044078(-)$1	290	172	199	20.6561
========ttttttttttt========	chr12:56119256-56119509(-)$1	253	191	218	24.3749
ff[a!!auuuuuuuuuuuua22a]fff	chr19:8381278-8381553(-)$1	275	113	140	22.5503
'ddddccctttttttttttccc22ddd	chr12:53689583-53689821(+)$1	238	172	199	22.7599
ffffyyyyyyyyyyyyyyyyffffff4	chr2:98263760-98263987(+)$1	227	23	50	20.8451

#otherMatches

#Seq PSSM
CCAGCUGGGCAGAGAUGAAGACCAAGU	chr17:45299100-45299319(+)$1	219	126	153	23.1508
GUUUGUUUUUUUUUUCCCCCCCAAACU	chr17:1553852-1554106(-)$1	254	196	223	20.5019
GUGCGCAUUGGCGAGAAAUAUGUUGAC	chr21:35275677-35275971(-)$1	294	58	85	24.0865
GUGACAGUCUACCAUAUUAUGUUACAG	chr11:314937-315171(+)$1	234	122	149	22.2121
CUAUAAGAACCGCUAAUUAUCUUUUCU	chr12:57106186-57106437(-)$1	251	65	92	21.1566
AGCCCAGCCCUAACUGCCAGCUGGCUG	chr19:18702868-18703140(+)$1	272	177	204	24.4901
CAGAGGCCAUAGGAUAACAGGGUUUUG	chr16:31202300-31202522(+)$1	222	171	198	23.1636
CUGGAGGACAUGGGACAACCCCCGGCG	chr19:18652471-18652745(-)$1	274	127	154	22.6263
ACCCAGAGAUUUUUUGACAGCUUUGGA	chr11:5290763-5290973(-)$1	210	89	116	23.3230
GGGCAUUAUAUUAUUCAAUUAGAGCCU	chr11:18424415-18424661(+)$1	246	199	226	23.3689
CUUUGAGGAGAAGAUUGAGAACCUCAC	chr1:52256476-52256759(-)$1	283	139	166	21.0710
AGCCUGCUUUUCUCCUCGCCGCAGGCC	chr2:97541863-97542143(-)$1	280	74	101	20.6693
uuuguuuuUUGUUUUUUCUUCAGGACC	chr2:98263706-98263916(+)$1	210	77	104	20.8451
CUCUUUUGACCUCCUCAGCCAAAACAG	chr16:1374636-1374926(+)$1	290	76	103	23.1880
uaugguggggacagaggaggcggcuau	chr17:34171673-34172062(+)$1	389	16	43	24.0578
AGCCGCCUGGACUGCAGGGGGGCGGCA	chr3:184052576-184052888(+)$1	312	173	200	23.9272
AGAUCUUCAUCUGUAGCCAAGAAGAGA	chr19:39125566-39125851(+)$1	285	123	150	21.3450
CCCUCUCUUGCACAGAUCUGGAGAAGG	chr6:31699986-31700224(-)$1	238	34	61	23.6837
uuuguuuuUUGUUUUUUCUUCAGGACC	chr2:98263716-98263953(+)$1	237	67	94	20.8451
GAGAUGGCUGAAUUCAAGGUGACCAUC	chr1:19585107-19585364(+)$1	257	82	109	23.9563
CAAAUUAGACAAGAAAAAGUAUCCCUA	chr17:73034879-73035153(-)$1	274	69	96	20.8471
CUCGCCGGGCAGACUUUAAUCGGGGUG	chr16:31201327-31201562(+)$1	235	75	102	23.6361
AUUGAAUGAAACUCAAAACCAUUUGAG	chr7:54823371-54823583(-)$1	212	140	167	21.9860
CAGAUCUCACAAGAACCUAGAGGUCGG	chr22:42017892-42018187(+)$1	295	22	49	19.9430
GGCGGGUGGCUCUUCCUCACGCUCGCU	chrX:12994307-12994581(+)$1	274	11	38	24.3749
CAUCUUUCUUCCGGACAAUGAAAUAAA	chrX:47445976-47446267(+)$1	291	169	196	23.7154
GGACGUCCAGUUUGAUGAGGGACUACC	chr12:57038862-57039096(-)$1	234	44	71	23.7399
GCUGAUCCAGAAGAAGCUACAGGGAGA	chr6:33257570-33257797(+)$1	227	71	98	21.6281
UAUGCUUUAUUUAUAUAUAGGAAGUUU	chr18:9126759-9127004(+)$1	245	147	174	20.9860
GCAGCUGAAGAUGAUGAGGUGGGUUCU	chr2:232577061-232577327(+)$1	266	147	174	23.1919
UGUGGGCUCCAGUUCAGACAGCACCAC	chr5:1815863-1816080(+)$1	217	134	161	23.0349
AGCGGCCCAUCACUUGCUUCCCGGGCC	chr11:64084430-64084648(-)$1	218	125	152	21.7288
UGAUAUUUUCCUUCACUAAUAUGAAUA	chr10:106026953-106027276(+)$1	323	241	268	21.5669
UUUUUAUUGAAAGCUUGCAAAUACAGA	chr12:96259000-96259252(+)$1	252	88	115	24.4162
CAUCCUGUACCUCUCACCUCACAGGAU	chr7:100486062-100486351(+)$1	289	8	35	23.7489
AGGAGGCUAUGAUCGAGGCGGCUACCG	chr16:31202186-31202438(+)$1	252	131	158	23.8466
UUACAGUGGUGGCUGAAUACAUUUUGG	chr7:54819920-54820218(-)$1	298	99	126	24.7246
UGCAUUGAUUGUCUUAUAUUUCAAGUU	chr10:105151912-105152140(-)$1	228	126	153	22.3219
ACCCAGAGAUUUUUUGACAGCUUUGGA	chr11:5290751-5290963(-)$1	212	79	106	23.3230
UUGCGCGCAAAAUCUACAAGCGGAGAA	chr1:155290293-155290545(+)$1	252	75	102	23.8019
CGCUGUAGGCAAGUGAUUCACUGCUGU	chr17:49232911-49233123(+)$1	212	46	73	23.5253
AGGUGGAGUAUCACUUCCUCUCUCCCU	chr3:195778848-195779112(-)$1	264	55	82	23.9515
UUUCAGUCUAAAGCCGCAUUUGAAAGG	chr19:4659848-4660105(-)$1	257	84	111	22.8308
GCUGAUCCAGAAGAAGCUACAGGGAGA	chr6:33257513-33257767(+)$1	254	128	155	21.6281
AAAGGGAUUCUGGAAAUGUUUUGUCUG	chr5:149827194-149827398(-)$1	204	42	69	21.5573
GGUUGUGGAAAAUAGAAUGCCCAGACC	chr2:101622707-101622978(+)$1	271	1	28	23.2574
UAGUCUGCAUUUUUUUAAACCAGCAAU	chr14:92583741-92584052(-)$1	311	213	240	21.8535
GGGCCUCUGGAGUUAUAAUGAGGCCUG	chr6:34385214-34385423(-)$1	209	1	28	22.4457
UGAUCUAUGUUGAUAAGGAAAAUGGAG	chr5:159849261-159849510(+)$1	249	68	95	21.3046
ACCCAGAGAUUUUUUGACAGCUUUGGA	chr11:5290730-5290951(-)$1	221	67	94	23.3230
GAGUCAGGGUGGGUUUGAAGACCUGAA	chr12:6879052-6879265(+)$1	213	167	194	23.2574
CUUUGUGAUCGUCCUCUUCUUCAUUUA	chrX:153609263-153609529(+)$1	266	230	257	23.6493
CUGGAGGACAUGGGACAACCCCCGGCG	chr19:18652545-18652802(-)$1	257	184	211	22.6263
GCCACCAUGAUUCUUACAGUUGGUGGU	chr6:75949916-75950174(-)$1	258	133	160	23.3102
UAUGAUCAACAUUUAAAUAUGAUCUUG	chr3:14225336-14225622(+)$1	286	103	130	23.6566
UAAGUGUGUUGUUCUUGUUCACAGUUG	chr2:217069810-217070073(+)$1	263	76	103	23.8505
ACCCCAUUCUGCCUCCUUCUGGGGAAA	chr8:145140916-145141167(+)$1	251	150	177	20.6908
CGGGGCGGGAGAUGAAGGUGCGCAUCC	chr19:55648400-55648674(-)$1	274	122	149	23.4136
AUCAGCAGAGACAUUGAUACUGCUGCC	chr2:176043788-176044078(-)$1	290	172	199	20.6561
CUGGGGGAGUGGAAUAGUAUCCUCCAG	chr12:56119256-56119509(-)$1	253	191	218	24.3749
UGCCCCCUUCCAUCAUCAUGUCGUCGC	chr19:8381278-8381553(-)$1	275	113	140	22.5503
AGUGGCGAACCUGCUUCUCUCGUCCCA	chr12:53689583-53689821(+)$1	238	172	199	22.7599
uuuguuuuUUGUUUUUUCUUCAGGACC	chr2:98263760-98263987(+)$1	227	23	50	20.8451

#DB
(((..(((.............)))..)	chr17:45299100-45299319(+)$1	1	126	153	23.1508
(((((................))))).	chr17:1553852-1554106(-)$1	1	196	223	20.5019
((..((((...........))))..))	chr21:35275677-35275971(-)$1	1	58	85	24.0865
((((((.............))))))))	chr11:314937-315171(+)$1	1	122	149	22.2121
....((((...........))))....	chr12:57106186-57106437(-)$1	1	65	92	21.1566
((((.(((...........))))))))	chr19:18702868-18703140(+)$1	1	177	204	24.4901
(((((.((...........)).)))))	chr16:31202300-31202522(+)$1	1	171	198	23.1636
((((.((............))))))))	chr19:18652471-18652745(-)$1	1	127	154	22.6263
..((((((............)))))).	chr11:5290763-5290973(-)$1	1	89	116	23.3230
((((.(((...........))).))))	chr11:18424415-18424661(+)$1	1	199	226	23.3689
))))((((.............))))..	chr1:52256476-52256759(-)$1	1	139	166	21.0710
.((((((.............)))))).	chr2:97541863-97542143(-)$1	1	74	101	20.6693
((((................)))))).	chr2:98263706-98263916(+)$1	1	77	104	20.8451
((((((((...........))))..))	chr16:1374636-1374926(+)$1	1	76	103	23.1880
((((((.(............).)))))	chr17:34171673-34172062(+)$1	1	16	43	24.0578
.(((((((...........))))))))	chr3:184052576-184052888(+)$1	1	173	200	23.9272
)).(((((............)))))..	chr19:39125566-39125851(+)$1	1	123	150	21.3450
((.(((((...........))))).))	chr6:31699986-31700224(-)$1	1	34	61	23.6837
((((................)))))).	chr2:98263716-98263953(+)$1	1	67	94	20.8451
..((((((............).)))))	chr1:19585107-19585364(+)$1	1	82	109	23.9563
(((..(((................)))	chr17:73034879-73035153(-)$1	1	69	96	20.8471
(((.((((...........)))).).)	chr16:31201327-31201562(+)$1	1	75	102	23.6361
)..(((((...........)))))(((	chr7:54823371-54823583(-)$1	1	140	167	21.9860
..((((((...........)))))).(	chr22:42017892-42018187(+)$1	1	22	49	19.9430
((((((((...........))))))))	chrX:12994307-12994581(+)$1	1	11	38	24.3749
....((((...........))))....	chrX:47445976-47446267(+)$1	1	169	196	23.7154
((..((((...........))))..))	chr12:57038862-57039096(-)$1	1	44	71	23.7399
(((..(((..............)))..	chr6:33257570-33257797(+)$1	1	71	98	21.6281
...(((((............)))))..	chr18:9126759-9127004(+)$1	1	147	174	20.9860
(.((((.(...........).))))))	chr2:232577061-232577327(+)$1	1	147	174	23.1919
.(((((((...........))).))))	chr5:1815863-1816080(+)$1	1	134	161	23.0349
.(.(((((..............)))))	chr11:64084430-64084648(-)$1	1	125	152	21.7288
((.(((((..............)))))	chr10:106026953-106027276(+)$1	1	241	268	21.5669
((((((((...........)))).)))	chr12:96259000-96259252(+)$1	1	88	115	24.4162
((((((((............)))))))	chr7:100486062-100486351(+)$1	1	8	35	23.7489
.((.((((...........)))).)).	chr16:31202186-31202438(+)$1	1	131	158	23.8466
(((.((((...........)))).)))	chr7:54819920-54820218(-)$1	1	99	126	24.7246
.((.((((............)))))).	chr10:105151912-105152140(-)$1	1	126	153	22.3219
..((((((............)))))).	chr11:5290751-5290963(-)$1	1	79	106	23.3230
((...(((...........)))....)	chr1:155290293-155290545(+)$1	1	75	102	23.8019
.((.((((............)))).))	chr17:49232911-49233123(+)$1	1	46	73	23.5253
(((.((((...........)))).)))	chr3:195778848-195779112(-)$1	1	55	82	23.9515
((((((.............))))))))	chr19:4659848-4660105(-)$1	1	84	111	22.8308
(((..(((..............)))..	chr6:33257513-33257767(+)$1	1	128	155	21.6281
.((.((((..............)))).	chr5:149827194-149827398(-)$1	1	42	69	21.5573
((((.(((............)))))))	chr2:101622707-101622978(+)$1	1	1	28	23.2574
((((.(((..............)))))	chr14:92583741-92584052(-)$1	1	213	240	21.8535
(((((((............))))))).	chr6:34385214-34385423(-)$1	1	1	28	22.4457
)).(((((.............))))).	chr5:159849261-159849510(+)$1	1	68	95	21.3046
..((((((............)))))).	chr11:5290730-5290951(-)$1	1	67	94	23.3230
(..(((((.............))))).	chr12:6879052-6879265(+)$1	1	167	194	23.2574
....((((............))))..)	chrX:153609263-153609529(+)$1	1	230	257	23.6493
((((.((............))))))))	chr19:18652545-18652802(-)$1	1	184	211	22.6263
(((((((.............)))))))	chr6:75949916-75950174(-)$1	1	133	160	23.3102
((.(((((...........))))).))	chr3:14225336-14225622(+)$1	1	103	130	23.6566
(((.((((...........)))).)))	chr2:217069810-217070073(+)$1	1	76	103	23.8505
.(((((.............)))))...	chr8:145140916-145141167(+)$1	1	150	177	20.6908
.((((((.............))).)))	chr19:55648400-55648674(-)$1	1	122	149	23.4136
((((((((...........)))))(((	chr2:176043788-176044078(-)$1	1	172	199	20.6561
((((((((...........))))))))	chr12:56119256-56119509(-)$1	1	191	218	24.3749
((.(..(............)..).)))	chr19:8381278-8381553(-)$1	1	113	140	22.5503
.(((((((...........)))..)))	chr12:53689583-53689821(+)$1	1	172	199	22.7599
((((................)))))).	chr2:98263760-98263987(+)$1	1	23	50	20.8451

#PSSM
g : 0.15	d : 0.12	f : 0.11	! : 0.09	c : 0.07	= : 0.06	e : 0.04	[ : 0.04	i : 0.03	: : 0.03	% : 0.03	' : 0.03	) : 0.01	h : 0.01	$ : 0.01	b : 0.01	& : 0.01	" : 0.01	a : 0.01	# : 0.01	D : 0.01	
g : 0.17	d : 0.15	f : 0.12	c : 0.09	! : 0.07	= : 0.06	b : 0.06	e : 0.04	i : 0.03	: : 0.03	) : 0.01	h : 0.01	$ : 0.01	% : 0.01	[ : 0.01	a : 0.01	# : 0.01	D : 0.01	
g : 0.15	f : 0.14	d : 0.12	[ : 0.07	c : 0.06	e : 0.06	= : 0.06	b : 0.06	! : 0.04	: : 0.04	i : 0.03	) : 0.01	a : 0.01	$ : 0.01	% : 0.01	" : 0.01	# : 0.01	D : 0.01	
e : 0.20	g : 0.15	f : 0.12	[ : 0.12	d : 0.11	! : 0.09	= : 0.04	i : 0.03	) : 0.01	$ : 0.01	" : 0.01	# : 0.01	c : 0.01	a : 0.01	
d : 0.30	e : 0.20	[ : 0.09	! : 0.07	g : 0.07	f : 0.07	y : 0.04	= : 0.04	i : 0.03	" : 0.01	c : 0.01	
d : 0.26	c : 0.19	e : 0.19	f : 0.07	y : 0.06	g : 0.06	= : 0.04	i : 0.03	b : 0.03	[ : 0.01	! : 0.01	
d : 0.25	c : 0.19	e : 0.17	f : 0.07	y : 0.06	v : 0.04	b : 0.04	g : 0.04	[ : 0.03	= : 0.03	i : 0.01	a : 0.01	
d : 0.25	c : 0.17	e : 0.15	v : 0.09	y : 0.06	u : 0.06	f : 0.06	a : 0.04	= : 0.03	b : 0.01	g : 0.01	i : 0.01	
t : 0.41	u : 0.25	v : 0.15	w : 0.09	y : 0.07	
t : 0.41	u : 0.25	v : 0.15	w : 0.09	y : 0.07	
t : 0.41	u : 0.25	v : 0.15	w : 0.09	y : 0.07	
t : 0.41	u : 0.25	v : 0.15	w : 0.09	y : 0.07	
t : 0.41	u : 0.25	v : 0.15	w : 0.09	y : 0.07	
t : 0.41	u : 0.25	v : 0.15	w : 0.09	y : 0.07	
t : 0.41	u : 0.25	v : 0.15	w : 0.09	y : 0.07	
t : 0.41	u : 0.25	v : 0.15	w : 0.09	y : 0.07	
t : 0.41	u : 0.25	v : 0.15	w : 0.09	y : 0.07	
t : 0.41	u : 0.25	v : 0.15	w : 0.09	y : 0.07	
t : 0.41	u : 0.25	v : 0.15	w : 0.09	y : 0.07	
u : 0.19	d : 0.17	v : 0.11	w : 0.09	y : 0.07	c : 0.07	e : 0.07	b : 0.04	= : 0.04	g : 0.03	a : 0.03	i : 0.01	f : 0.01	
d : 0.22	f : 0.12	c : 0.11	e : 0.11	w : 0.09	v : 0.06	b : 0.04	g : 0.04	= : 0.04	y : 0.03	i : 0.03	a : 0.03	] : 0.01	2 : 0.01	
d : 0.25	e : 0.15	c : 0.12	f : 0.12	w : 0.09	g : 0.07	] : 0.04	= : 0.04	i : 0.03	y : 0.01	2 : 0.01	
d : 0.26	e : 0.20	g : 0.12	f : 0.12	c : 0.09	= : 0.04	i : 0.03	] : 0.03	y : 0.01	4 : 0.01	a : 0.01	2 : 0.01	
e : 0.20	d : 0.14	g : 0.12	f : 0.12	] : 0.12	c : 0.06	2 : 0.06	= : 0.04	i : 0.03	4 : 0.03	0 : 0.01	y : 0.01	
f : 0.15	e : 0.14	g : 0.14	d : 0.12	2 : 0.07	c : 0.07	= : 0.06	i : 0.04	] : 0.04	4 : 0.03	b : 0.03	0 : 0.01	a : 0.01	8 : 0.01	
f : 0.17	g : 0.15	d : 0.12	e : 0.11	2 : 0.06	= : 0.06	b : 0.06	c : 0.04	i : 0.04	: : 0.04	4 : 0.03	0 : 0.01	] : 0.01	5 : 0.01	8 : 0.01	
d : 0.14	g : 0.12	: : 0.09	c : 0.07	3 : 0.06	4 : 0.06	f : 0.06	e : 0.06	= : 0.06	i : 0.04	b : 0.04	2 : 0.04	5 : 0.03	0 : 0.01	h : 0.01	] : 0.01	8 : 0.01	

#score	1429.5519267958512
#seq	63
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_UTR_m2_run2.txt

#BEAR
iiiiiiiccccccooooooccc]ccc]iiiiiii	chr5:176728472-176728684(-)$1	212	10	44	16.4502
========"""ddddoooooodddd=========	chr20:61303393-61303675(+)$1	282	58	92	17.2933
[ccc[cccccc[cccmmmmccc]ccc]ccc333c	chr17:40268952-40269190(-)$1	238	45	79	14.0139
eeee[ccc!!ddddoooooodddd4444ccceee	chr1:1246974-1247236(-)$1	262	72	106	12.2524
iiii"""ccca[ddddllldddd]a]ccc4444i	chr2:240900222-240900474(-)$1	252	115	149	13.1934
d[ggggggg"""cccmmmmccc4444gggggggd	chr1:207968694-207968935(+)$1	241	150	184	14.9863
====[==========mmmm==========]====	chr13:107195782-107196031(-)$1	249	63	97	18.7474
=========[ddddoooooodddd22========	chr3:49454154-49454453(-)$1	299	123	157	16.6058
[gggggggaccc[ccclllcccccc333a]gggg	chr1:12628171-12628414(-)$1	243	79	113	14.8288
iiiiii"""ffffffmmmmffffff333iiiiii	chr6:31605331-31605608(+)$1	277	108	142	14.1036
eeee!!ccc"""cccooooooccc4444ccc]ee	chr2:188343227-188343495(-)$1	268	231	265	14.1781
ccc####ccc!!cccmmmmccc]ccc4444ccc]	chr12:56510336-56510543(+)$1	207	119	153	14.1618
b####gggggggcccmmmmccc]ggggggg333b	chr2:216903085-216903357(-)$1	272	140	174	13.8395
ggggggg[gggggggooooooggggggggggggg	chr8:25272813-25273055(+)$1	242	118	152	14.1610
ggggggg"""cccbbnnnnnbb]ccc4444gggg	chr18:9954443-9954692(+)$1	249	202	236	13.2754
==========!!ccclllccc22==========3	chr4:2517048-2517300(+)$1	252	158	192	18.3467
========$$$$$ccclllccc22==========	chr14:105185518-105185831(+)$1	313	115	149	17.2366
FF:============oooooo============:	chr17:1323898-1324236(-)$1	338	166	200	15.2876
=======!!ccc[ccclllccc]ccc4444====	chr16:15131345-15131631(+)$1	286	24	58	17.0883
c[ggggggg[cccoooooocccggggggg]ccc]	chr17:30327567-30327831(+)$1	264	148	182	14.5207
!!===========bbmmmmbb]===========2	chr1:1287995-1288311(-)$1	316	58	92	17.4171
========="""ddddllldddd333========	chr2:219563719-219564026(+)$1	307	225	259	17.5221
===========ssssssssss===========]b	chrX:122734814-122735111(-)$1	297	134	168	14.4474
========[ffffffmmmmffffff]========	chr10:5805133-5805435(+)$1	302	167	201	15.2401
!!bb[a[gggggggooooooggggggg]a]bb22	chr3:123632677-123632938(-)$1	261	13	47	12.9418
::==========abbmmmmbb]a]==========	chr17:2592901-2593129(-)$1	228	142	176	14.6985
"""ccc####eeeeellleeeee4444ccc333f	chr9:96327876-96328123(+)$1	247	188	222	12.1375
e[ccc[ccc"""cccmmmmccc]ccc]ccc22ee	chr7:128411344-128411588(+)$1	244	207	241	13.6288
iiiiiiiccccccooooooccc]ccc]iiiiiii	chr5:176728491-176728762(-)$1	271	88	122	16.4502
ddd============mmmm============]dd	chr17:78093022-78093320(+)$1	298	68	102	16.5731
%%%============lll============dddd	chr22:46753021-46753301(+)$1	280	41	75	14.7439
====[==========mmmm==========]====	chr13:107195699-107195982(-)$1	283	14	48	18.7474
iiiiiiiibb[ddddlllddddbb333iiiiiii	chr9:117063626-117063842(+)$1	216	37	71	14.2673
!===========ssssssssss===========b	chr3:184908318-184908722(-)$1	404	244	278	14.6762
&&==========rrrrrrrrr==========eee	chr11:112104217-112104596(+)$1	379	335	369	14.3752
ffccciiiiiiiiiooooooiiiiiiiii]ccc:	chr6:132211741-132212017(+)$1	276	91	125	14.2561
========"""a[bbnnnnnbb]a==========	chr2:54896532-54896765(+)$1	233	164	198	16.7632
gggggg[ccc!!cccmmmmccc4444ccc]gggg	chr6:1314803-1315057(+)$1	254	66	100	14.9093
cc[eeeee[a!!cccmmmmccc4444a]eeeee]	chr5:135399155-135399393(+)$1	238	10	44	12.5900
e[==========!!bblllbb22==========]	chr22:38029230-38029499(+)$1	269	104	138	16.8533
========[bb[cccooooooccc]bb333====	chr2:153506177-153506424(+)$1	247	199	233	16.4686
iiiiiii####ddddllldddd333iiiiiiiii	chr11:124789062-124789344(-)$1	282	147	181	15.8329
============qqqqqqqq==============	chr6:168372317-168372550(+)$1	233	55	89	15.3401
!!ccciiiiiiiiiooooooiiiiiiiii]ccc4	chr6:132211817-132212055(+)$1	238	15	49	15.9673
[iiiiiiiii!!cccmmmmccc]iiiiiiiiiee	chr11:34493278-34493562(+)$1	284	81	115	17.0753
dddd[==========nnnnn==========22dd	chr20:39804046-39804325(+)$1	279	234	268	14.4625
=======!!ccc[ccclllccc]ccc4444====	chr16:15131238-15131492(+)$1	254	131	165	17.0883
!!===========qqqqqqqq===========22	chr3:51426497-51426816(+)$1	319	238	272	14.7760

#otherMatches

#Seq PSSM
GCUUGGGUAGUCAAAUGUCUGAGCUACCCCAGGU	chr5:176728472-176728684(-)$1	212	10	44	16.4502
AUGGACACACAGUUUGCAUCAGAACGUGUUUAUA	chr20:61303393-61303675(+)$1	282	58	92	17.2933
CGGGUCAUCGGUGGCAUCUGCUUCCGCAUGUUUC	chr17:40268952-40269190(-)$1	238	45	79	14.0139
UGGGUGCCCUGGGUGAACAGACCCUGCAGGUCCC	chr1:1246974-1247236(-)$1	262	72	106	12.2524
GGGGAAGCAGCUUCCAUUCUGGAUGUUUGGAACC	chr2:240900222-240900474(-)$1	252	115	149	13.1934
UUGGAGAUGUUUCAUGAUGAUGUGUUUAUUUCUA	chr1:207968694-207968935(+)$1	241	150	184	14.9863
UUUUGuuuuuuuauauauuuauaaaaaaaGAAAA	chr13:107195782-107196031(-)$1	249	63	97	18.7474
UAGGGCAGGGUGGGCUUCCUCCCAGACUUGCCUU	chr3:49454154-49454453(-)$1	299	123	157	16.6058
AGUUUGGGGGCCACAGCACCUGGGCACACACCCG	chr1:12628171-12628414(-)$1	243	79	113	14.8288
GAGGGGUUCUGGGGCUGGGGCCUCACUUCCCCUC	chr6:31605331-31605608(+)$1	277	108	142	14.1036
AGCAAAGAAAAAUGAAUAUUCUCAGGAGUUCGUG	chr2:188343227-188343495(-)$1	268	231	265	14.1781
UGGUUCCUGCGUUGGGAUUCCGUGUACAAUCCAU	chr12:56510336-56510543(+)$1	207	119	153	14.1618
AGGAGCAAUAAUGCCUUAUGGUAAUUAUUGAUGU	chr2:216903085-216903357(-)$1	272	140	174	13.8395
GUGGGUUGAGAGUUGGACCAUCAAUUCUAAUCUA	chr8:25272813-25273055(+)$1	242	118	152	14.1610
GGGGAAAUGGUGCCUCUUACAGUGUAAAUUUUUC	chr18:9954443-9954692(+)$1	249	202	236	13.2754
UCUGGGCAUCACGGCAAUGUCACGAUGCCCAGAC	chr4:2517048-2517300(+)$1	252	158	192	18.3467
GUUCCAGCAUGUCCAGCCCCUGAAGUUGGAGUGG	chr14:105185518-105185831(+)$1	313	115	149	17.2366
GUAGCAUGUAUUGUAUAUGUUUAUAGUAUAUGUA	chr17:1323898-1324236(-)$1	338	166	200	15.2876
CCUAUUUGGUGCAAUGAAGUAUAGCAGAUAAAAU	chr16:15131345-15131631(+)$1	286	24	58	17.0883
UCUUAAGCAGUUAUGCUCUUAAUGCUUAAAAGAA	chr17:30327567-30327831(+)$1	264	148	182	14.5207
UCCCUUGGACUCUGCCUGGGCUGGAGUCUAGGGC	chr1:1287995-1288311(-)$1	316	58	92	17.4171
GGAGCUGUUACAGUGCGAAGUACCCCAGCGGCUC	chr2:219563719-219564026(+)$1	307	225	259	17.5221
GCUGAAAGUGUUAACUGUUCCAUACUUUUAGCAC	chrX:122734814-122735111(-)$1	297	134	168	14.4474
AAAAUAAGUCUAUUUUAACAAAUAGCUUUGUUUU	chr10:5805133-5805435(+)$1	302	167	201	15.2401
UUUGUGGGUUUUUUUUAAAUAAGAAAUGUUUAUU	chr3:123632677-123632938(-)$1	261	13	47	12.9418
CUGGGGGUGGCGGGGGCCCCCACACGCUGCUCCC	chr17:2592901-2593129(-)$1	228	142	176	14.6985
GGUAUACUUCUAUCAUUUUGAUGUUUUUGUUAAU	chr9:96327876-96328123(+)$1	247	188	222	12.1375
UUUUCCAAGAAAUAGAACUCUAGCUUAGAAUUAU	chr7:128411344-128411588(+)$1	244	207	241	13.6288
GCUUGGGUAGUCAAAUGUCUGAGCUACCCCAGGU	chr5:176728491-176728762(-)$1	271	88	122	16.4502
GCUGUUGAUGGGAGAGCAGUUUCUCGUCAGCUGG	chr17:78093022-78093320(+)$1	298	68	102	16.5731
GGAAGAGCCUCAGCUCCAGGCUGGGGCUCUGGCU	chr22:46753021-46753301(+)$1	280	41	75	14.7439
UUUUGuuuuuuuauauauuuauaaaaaaaGAAAA	chr13:107195699-107195982(-)$1	283	14	48	18.7474
GAGUUGGGCCAUGGCUCAGCCAGGUUCCCUAACU	chr9:117063626-117063842(+)$1	216	37	71	14.2673
CUUAAUUUUAUAUAAUUUGGUUUGUGAAAUUAAA	chr3:184908318-184908722(-)$1	404	244	278	14.6762
UUGAAAGCAAAAGAAAUCUAAUUUUGUUUUCUCC	chr11:112104217-112104596(+)$1	379	335	369	14.3752
UGAAUCUUGCACAUAUUUGAAUGUGUAAGCAUUG	chr6:132211741-132212017(+)$1	276	91	125	14.2561
GGGCCUGAACAGGGAGGUGGUCGCUCAGGCCUGG	chr2:54896532-54896765(+)$1	233	164	198	16.7632
CAAGUGUGauuuuuauuuuuaauauuauuuuauu	chr6:1314803-1315057(+)$1	254	66	100	14.9093
CACUUCCAGAGAGGACCUAUCCCAAAUGUGGAAU	chr5:135399155-135399393(+)$1	238	10	44	12.5900
CAUUGGGCCCCCUGAGGGACUGUGGGGGCUCAAG	chr22:38029230-38029499(+)$1	269	104	138	16.8533
UAGGGGGUUUUAGCAAUAUUAUGUAGACUUACCU	chr2:153506177-153506424(+)$1	247	199	233	16.4686
cauccagcagagugccuagcacauacuggaugcu	chr11:124789062-124789344(-)$1	282	147	181	15.8329
AUGUAAAUAUCUACAUACAGGGAUAUUUGUAUGU	chr6:168372317-168372550(+)$1	233	55	89	15.3401
UGAAUCUUGCACAUAUUUGAAUGUGUAAGCAUUG	chr6:132211817-132212055(+)$1	238	15	49	15.9673
AGAUAAAGAUGAUCUACUCAGAAAUUUUUAUUUU	chr11:34493278-34493562(+)$1	284	81	115	17.0753
GGGCUCAGGGUUGGCCAUUUGCUAGUUCUGCUGC	chr20:39804046-39804325(+)$1	279	234	268	14.4625
CCUAUUUGGUGCAAUGAAGUAUAGCAGAUAAAAU	chr16:15131238-15131492(+)$1	254	131	165	17.0883
CUGGGAUUUUUUUAUUAAAGAAAAAAAAUUUCUA	chr3:51426497-51426816(+)$1	319	238	272	14.7760

#DB
(((((((((((((......))).))).)))))))	chr5:176728472-176728684(-)$1	1	10	44	16.4502
((((((((...((((......)))))))))))))	chr20:61303393-61303675(+)$1	1	58	92	17.2933
.(((.((((((.(((....))).))).)))...)	chr17:40268952-40269190(-)$1	1	45	79	14.0139
((((.(((..((((......))))....))))))	chr1:1246974-1247236(-)$1	1	72	106	12.2524
((((...((((.((((...)))).).)))....)	chr2:240900222-240900474(-)$1	1	115	149	13.1934
(.(((((((...(((....)))....))))))))	chr1:207968694-207968935(+)$1	1	150	184	14.9863
((((.((((((((((....)))))))))).))))	chr13:107195782-107196031(-)$1	1	63	97	18.7474
(((((((((.((((......))))..))))))))	chr3:49454154-49454453(-)$1	1	123	157	16.6058
.(((((((((((.(((...))))))...).))))	chr1:12628171-12628414(-)$1	1	79	113	14.8288
((((((...((((((....))))))...))))))	chr6:31605331-31605608(+)$1	1	108	142	14.1036
((((..(((...(((......)))....))).))	chr2:188343227-188343495(-)$1	1	231	265	14.1781
(((....(((..(((....))).)))....))).	chr12:56510336-56510543(+)$1	1	119	153	14.1618
(....((((((((((....))).)))))))...)	chr2:216903085-216903357(-)$1	1	140	174	13.8395
(((((((.(((((((......)))))))))))))	chr8:25272813-25273055(+)$1	1	118	152	14.1610
(((((((...(((((.....)).)))....))))	chr18:9954443-9954692(+)$1	1	202	236	13.2754
((((((((((..(((...)))..)))))))))).	chr4:2517048-2517300(+)$1	1	158	192	18.3467
((((((((.....(((...)))..))))))))))	chr14:105185518-105185831(+)$1	1	115	149	17.2366
((.((((((((((((......)))))))))))).	chr17:1323898-1324236(-)$1	1	166	200	15.2876
(((((((..(((.(((...))).)))....))))	chr16:15131345-15131631(+)$1	1	24	58	17.0883
(.(((((((.(((......)))))))))).))).	chr17:30327567-30327831(+)$1	1	148	182	14.5207
..(((((((((((((....)).))))))))))).	chr1:1287995-1288311(-)$1	1	58	92	17.4171
(((((((((...((((...))))...))))))))	chr2:219563719-219564026(+)$1	1	225	259	17.5221
(((((((((((..........))))))))))).)	chrX:122734814-122735111(-)$1	1	134	168	14.4474
((((((((.((((((....)))))).))))))))	chr10:5805133-5805435(+)$1	1	167	201	15.2401
..((.(.(((((((......))))))).).))..	chr3:123632677-123632938(-)$1	1	13	47	12.9418
..(((((((((((((....)).).))))))))))	chr17:2592901-2593129(-)$1	1	142	176	14.6985
...(((....(((((...)))))....)))...)	chr9:96327876-96328123(+)$1	1	188	222	12.1375
(.(((.(((...(((....))).))).)))..))	chr7:128411344-128411588(+)$1	1	207	241	13.6288
(((((((((((((......))).))).)))))))	chr5:176728491-176728762(-)$1	1	88	122	16.4502
(((((((((((((((....)))))))))))).))	chr17:78093022-78093320(+)$1	1	68	102	16.5731
...((((((((((((...))))))))))))))))	chr22:46753021-46753301(+)$1	1	41	75	14.7439
((((.((((((((((....)))))))))).))))	chr13:107195699-107195982(-)$1	1	14	48	18.7474
((((((((((.((((...))))))...)))))))	chr9:117063626-117063842(+)$1	1	37	71	14.2673
.(((((((((((..........))))))))))))	chr3:184908318-184908722(-)$1	1	244	278	14.6762
..((((((((((.........)))))))))))))	chr11:112104217-112104596(+)$1	1	335	369	14.3752
))((((((((((((......))))))))).))).	chr6:132211741-132212017(+)$1	1	91	125	14.2561
((((((((...(.((.....)).)))))))))))	chr2:54896532-54896765(+)$1	1	164	198	16.7632
((((((.(((..(((....)))....))).))))	chr6:1314803-1315057(+)$1	1	66	100	14.9093
((.(((((.(..(((....)))....).))))).	chr5:135399155-135399393(+)$1	1	10	44	12.5900
(.((((((((((..((...))..)))))))))).	chr22:38029230-38029499(+)$1	1	104	138	16.8533
((((((((.((.(((......))).))...))))	chr2:153506177-153506424(+)$1	1	199	233	16.4686
(((((((....((((...))))...)))))))))	chr11:124789062-124789344(-)$1	1	147	181	15.8329
((((((((((((........))))))))))))))	chr6:168372317-168372550(+)$1	1	55	89	15.3401
..((((((((((((......))))))))).))).	chr6:132211817-132212055(+)$1	1	15	49	15.9673
.(((((((((..(((....))).)))))))))))	chr11:34493278-34493562(+)$1	1	81	115	17.0753
((((.((((((((((.....))))))))))..))	chr20:39804046-39804325(+)$1	1	234	268	14.4625
(((((((..(((.(((...))).)))....))))	chr16:15131238-15131492(+)$1	1	131	165	17.0883
..(((((((((((........)))))))))))..	chr3:51426497-51426816(+)$1	1	238	272	14.7760

#PSSM
= : 0.29	i : 0.12	! : 0.10	e : 0.08	[ : 0.06	d : 0.06	c : 0.06	g : 0.06	b : 0.02	F : 0.02	: : 0.02	" : 0.02	% : 0.02	& : 0.02	f : 0.02	
= : 0.31	i : 0.14	[ : 0.08	g : 0.08	! : 0.08	c : 0.06	e : 0.04	d : 0.04	# : 0.02	F : 0.02	: : 0.02	" : 0.02	% : 0.02	& : 0.02	f : 0.02	
= : 0.41	i : 0.14	g : 0.12	c : 0.10	e : 0.04	d : 0.04	# : 0.02	: : 0.02	b : 0.02	" : 0.02	% : 0.02	[ : 0.02	
= : 0.47	i : 0.14	g : 0.12	c : 0.10	e : 0.06	# : 0.04	b : 0.02	d : 0.02	
= : 0.43	i : 0.12	[ : 0.12	g : 0.12	c : 0.08	# : 0.04	" : 0.02	! : 0.02	e : 0.02	
= : 0.49	i : 0.16	g : 0.14	c : 0.06	" : 0.02	! : 0.02	# : 0.02	a : 0.02	[ : 0.02	e : 0.02	
= : 0.49	i : 0.14	g : 0.12	c : 0.08	" : 0.04	# : 0.04	[ : 0.04	e : 0.02	
= : 0.45	c : 0.18	g : 0.10	i : 0.08	" : 0.04	! : 0.04	# : 0.04	[ : 0.02	e : 0.02	
= : 0.35	c : 0.16	g : 0.10	" : 0.08	! : 0.06	[ : 0.06	i : 0.06	# : 0.04	a : 0.02	$ : 0.02	b : 0.02	
= : 0.31	c : 0.18	" : 0.14	g : 0.06	i : 0.06	[ : 0.04	f : 0.04	# : 0.04	b : 0.04	! : 0.02	$ : 0.02	a : 0.02	
= : 0.29	c : 0.16	" : 0.12	! : 0.10	g : 0.06	d : 0.04	f : 0.04	i : 0.04	a : 0.02	$ : 0.02	e : 0.02	[ : 0.02	b : 0.02	# : 0.02	
= : 0.27	c : 0.14	d : 0.10	! : 0.10	" : 0.08	[ : 0.06	g : 0.06	f : 0.04	i : 0.04	$ : 0.02	s : 0.02	e : 0.02	a : 0.02	
c : 0.31	= : 0.16	d : 0.14	[ : 0.08	f : 0.04	g : 0.04	s : 0.04	i : 0.04	$ : 0.02	a : 0.02	e : 0.02	r : 0.02	! : 0.02	q : 0.02	
c : 0.31	d : 0.14	= : 0.12	b : 0.08	o : 0.06	f : 0.04	g : 0.04	s : 0.04	i : 0.04	q : 0.04	e : 0.02	r : 0.02	! : 0.02	
c : 0.31	o : 0.16	= : 0.12	d : 0.10	b : 0.10	f : 0.04	s : 0.04	q : 0.04	g : 0.02	e : 0.02	r : 0.02	
m : 0.31	o : 0.27	l : 0.10	c : 0.08	n : 0.06	d : 0.04	s : 0.04	q : 0.04	r : 0.02	b : 0.02	
m : 0.31	o : 0.27	l : 0.25	n : 0.06	s : 0.04	q : 0.04	r : 0.02	
m : 0.31	o : 0.27	l : 0.25	n : 0.06	s : 0.04	q : 0.04	r : 0.02	
m : 0.31	o : 0.27	l : 0.14	n : 0.06	s : 0.04	d : 0.04	q : 0.04	c : 0.02	e : 0.02	= : 0.02	r : 0.02	
c : 0.33	o : 0.20	d : 0.08	= : 0.08	n : 0.06	b : 0.06	f : 0.04	s : 0.04	q : 0.04	e : 0.02	r : 0.02	
c : 0.33	d : 0.12	= : 0.12	o : 0.10	b : 0.10	f : 0.04	s : 0.04	i : 0.04	g : 0.02	e : 0.02	r : 0.02	q : 0.02	
c : 0.35	= : 0.20	d : 0.14	f : 0.04	g : 0.04	b : 0.04	2 : 0.04	] : 0.04	i : 0.04	e : 0.02	s : 0.02	
= : 0.25	] : 0.22	d : 0.10	4 : 0.06	c : 0.06	g : 0.06	2 : 0.06	f : 0.04	i : 0.04	a : 0.02	e : 0.02	b : 0.02	3 : 0.02	
= : 0.29	c : 0.22	4 : 0.08	g : 0.08	d : 0.06	i : 0.06	] : 0.04	f : 0.04	3 : 0.04	2 : 0.02	b : 0.02	a : 0.02	
= : 0.35	c : 0.18	4 : 0.12	g : 0.08	3 : 0.06	i : 0.06	f : 0.04	d : 0.02	a : 0.02	2 : 0.02	] : 0.02	
= : 0.37	c : 0.16	4 : 0.12	3 : 0.08	g : 0.08	i : 0.08	] : 0.04	2 : 0.02	b : 0.02	
= : 0.43	4 : 0.14	g : 0.10	] : 0.08	i : 0.08	3 : 0.06	c : 0.04	a : 0.02	b : 0.02	
= : 0.43	i : 0.14	4 : 0.12	c : 0.10	g : 0.08	3 : 0.06	] : 0.04	
= : 0.43	i : 0.16	c : 0.14	g : 0.08	4 : 0.08	a : 0.04	e : 0.02	3 : 0.02	
= : 0.39	] : 0.16	i : 0.12	c : 0.10	4 : 0.10	g : 0.06	e : 0.02	3 : 0.02	
= : 0.45	i : 0.12	c : 0.12	g : 0.10	3 : 0.06	2 : 0.04	4 : 0.02	b : 0.02	d : 0.02	e : 0.02	
= : 0.41	i : 0.12	g : 0.10	c : 0.08	3 : 0.06	e : 0.06	] : 0.04	2 : 0.04	4 : 0.02	b : 0.02	d : 0.02	
= : 0.37	e : 0.12	i : 0.10	g : 0.10	c : 0.08	3 : 0.06	d : 0.06	2 : 0.04	4 : 0.02	] : 0.02	
= : 0.27	i : 0.12	e : 0.10	d : 0.08	g : 0.08	] : 0.08	b : 0.06	2 : 0.06	: : 0.04	c : 0.02	3 : 0.02	f : 0.02	4 : 0.02	

#score	734.8228970468871
#seq	48
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_CDS_m1_run2.txt

#BEAR
""eeeeedddd[ccc!!aooooooa22cccdddd333eee	chr6:31783328-31783649(+)$1	321	12	52	12.5822
fffff[a$$$$$gggggggooooooggggggg4444afff	chr6:31609581-31609822(-)$1	241	146	186	11.6114
%iiiiiiiii[bb"""cccnnnnnccc22bb]iiiiiiii	chrX:71495919-71496166(-)$1	247	97	137	14.1408
hhhhhhh!!ccc"""ddddnnnnndddd22ccc333hhhh	chr3:5024770-5025017(+)$1	247	5	45	17.1362
cc[ccc!!gggggggddddnnnnndddd]ggggggg22cc	chr17:1303241-1303488(-)$1	247	157	197	14.7934
ccc[ccc[ccc"""eeeeennnnneeeee]ccc22ccccc	chr12:57882968-57883228(+)$1	260	15	55	14.4646
!!ffffffccca!!eeeeemmmmeeeee22a]ccc22fff	chr1:113162372-113162606(+)$1	234	122	162	12.6754
[iiiiiiiii$$$$$eeeeellleeeeeiiiiiiiiieee	chr6:31749555-31749826(-)$1	271	225	265	12.7263
iiiiiii"""bb"""ddddlllddddbb333iiiiiiiii	chr11:62482632-62482893(-)$1	261	81	121	15.5309
eeee[ddddccc[ccc[cccmmmmcccccc]ccc333ddd	chr6:26123791-26124026(-)$1	235	183	223	12.3587
eeeee####dddddddd[annnnna]dddd]dddd4444e	chr1:8922897-8923103(-)$1	206	106	146	12.8086
eeeee[cccdddd"""cccooooooccc333dddd]ccce	chr6:26055960-26056181(-)$1	221	96	136	15.4012
bb[eeeee!!bb"""eeeeemmmmeeeee333bb22eeee	chr19:12910971-12911214(-)$1	243	152	192	12.8599
bb[ggggggg$$$$$ddddllldddd22ggggggg22bb]	chr19:13049474-13049684(+)$1	210	39	79	12.7474
fffeeeee[eeeee[ddddnnnnndddd]eeeee22eeee	chr11:61081752-61082029(-)$1	277	162	202	13.6106
ddeeeee!!ccc"""ddddmmmmddddccc22eeeee]dd	chr9:75780982-75781208(+)$1	226	85	125	13.3188
gggggg"""ccc"""ddddnnnnndddd333ccc333ggg	chr2:198363394-198363660(-)$1	266	156	196	19.8810
cccggggggg"""ccc[bbnnnnnbb]ccc333ggggggg	chr19:19015480-19015727(-)$1	247	114	154	13.0399
e[ccc!!ffffff"""ddddmmmmddddffffff22ccc]	chr2:20240583-20240858(-)$1	275	81	121	13.0382
ffffff!!gggggggddddllldddd22ggggggg22fff	chr7:75931949-75932207(+)$1	258	166	206	12.1673
c$$$$$dddd$$$$$ddddnnnnndddd4444dddd333c	chr1:156280764-156281029(-)$1	265	205	245	13.8179
ee[hhhhhhhh!!cccddddmmmmdddd22ccc333hhhh	chr17:41154620-41154860(+)$1	240	75	115	13.0845
ffffggggggg####ddddnnnnndddd333ggggggg::	chr1:45980521-45980745(-)$1	224	175	215	15.2812
gggggg[a!!bb[ccc[cccmmmmccc22ccc]bb22a]g	chrX:55035623-55035869(-)$1	246	79	119	12.7169
gggga[bb[ccc"""ccc[aooooooa]ccc]ccc22bb2	chr16:56642450-56642696(+)$1	246	104	144	14.1576
hhhh!!cccdddd"""ddddmmmmdddd333dddd]ccc2	chr11:34118035-34118319(+)$1	284	77	117	14.4756
dddd[ccceeeee!!ddddmmmmdddd]eeeee333ccc]	chr8:125561997-125562213(+)$1	216	11	51	12.5092
!dddd[cccccc[cccooooooccc]ccc22ccc22dddd	chr8:11688925-11689159(+)$1	234	185	225	11.6538
cceeeee[dddd[bb[cccnnnnnccc]bb]dddd]eeee	chr2:73476094-73476402(+)$1	308	142	182	12.4314
gggbba[a[ffffff[cccnnnnnccc]ffffffa]a]bb	chr6:27100912-27101174(+)$1	262	70	110	11.8788
fffff[cccdddd[eeeeennnnneeeee]dddd]ccc]f	chr19:581465-581691(+)$1	226	49	89	12.5044
gggg[ccc[dddd[ddddoooooodddd333dddd333cc	chr3:49412765-49413009(-)$1	244	18	58	16.6310
$$$gggggggeeeeecccooooooccc4444eeeee]ggg	chr16:30081368-30081626(+)$1	258	11	51	13.1977
i[eeeee!!ccc####ddddmmmmdddd22ccc]eeeeei	chr1:24019064-24019305(+)$1	241	169	209	15.1376
fa[ccc"""eeeee[ccclllccceeeee4444ccc]a]f	chr12:56555069-56555298(+)$1	229	115	155	11.2075
d[bbccc!!dddd[eeeeennnnneeeeedddd22ccc]b	chr17:26900664-26900903(-)$1	239	185	225	11.9284
b[bb####eeeee[ddddooooooddddeeeeebb]bbee	chr6:41756940-41757175(+)$1	235	89	129	11.8582
bb[dddd[ccc!!a[cccooooooccc]a22ccc]ddddb	chr16:2292976-2293254(-)$1	278	183	223	14.0117
hhhhh[ffffff####cccnnnnncccffffff333hhhh	chr16:21983190-21983428(+)$1	238	150	190	13.6776
gggga!!dddd!!ccc[aooooooa]ccc333dddd4444	chr2:73479850-73480097(+)$1	247	115	155	14.4231
bb[eeeee[ccc####ddddlllddddccc]eeeee]bb3	chrX:77372793-77373012(+)$1	219	86	126	13.6716
ggggggbb[bb####cccoooooocccbbbb]ggggggg=	chr21:35284492-35284732(-)$1	240	80	120	13.6386
iiiiiiiiiccc"""cccooooooccc333ccc>>>>>>>	chr6:170844166-170844418(-)$1	252	155	195	16.0075
::ccc"""ggggggg[cccnnnnnccc]ggggggg333cc	chr1:87368882-87369155(-)$1	273	132	172	12.8829
ggggg####dddd[ddddoooooodddd22dddd666666	chr1:8921315-8921552(-)$1	237	125	165	12.8879
!!iiiiiiiiibb[ccc[annnnna]ccc]bb]iiiiiii	chr11:61093043-61093281(-)$1	238	123	163	13.6231
hhbb!!eeeee[a!!cccooooooccc22aeeeee22bb4	chr10:102114169-102114436(+)$1	267	111	151	13.4892
d::iiiiiiiii"""ddddoooooodddd4444iiiiiii	chr15:72502587-72502807(-)$1	220	167	207	14.1967
gggggg!!cccffffffooooooffffff22ccc4444gg	chr15:78837114-78837394(+)$1	280	128	168	12.5541
ffffff!!a[bb"""ddddnnnnndddd333bb]a22fff	chr2:85843400-85843689(+)$1	289	165	205	16.6364
gggg[ccc####eeeeeooooooeeeee333ccc22gggg	chr10:62544384-62544672(+)$1	288	53	93	14.2362
i[eeeee!!ccc####ddddmmmmdddd22ccc]eeeeei	chr1:24019134-24019349(+)$1	215	99	139	15.1376
iiiiiiiii[bb[a[ddddmmmmdddd]abbiiiiiiiii	chr8:48739227-48739461(-)$1	234	11	51	13.1124
"""eeeee[ccc####ddddmmmmdddd333ccceeeeef	chr19:19638824-19639090(+)$1	266	49	89	15.2099
eeedddd[ccc####eeeeellleeeee4444cccdddd]	chr19:59058648-59058867(+)$1	219	48	88	13.1172
!!gggggggffffff[cccnnnnnccc22ffffff]gggg	chr9:140136911-140137155(+)$1	244	196	236	13.2580
!dddd####dddd####cccnnnnnccc22dddd]dddd2	chr7:5644898-5645153(+)$1	255	54	94	12.5389

#otherMatches

#Seq PSSM
CUGCGACAGUCCACUACCUUUUUCGAGAGUGACUCCCGUU	chr6:31783328-31783649(+)$1	321	12	52	12.5822
GGUGGACGUAGUGAUGCUUCUCCAUGGGCAUUUCCAGCCA	chr6:31609581-31609822(-)$1	241	146	186	11.6114
AAGCAUCUGAAGCGGGUGGCAGCUCCAAAGCAUUGGAUGC	chrX:71495919-71496166(-)$1	247	97	137	14.1408
AAGGUCCUGGGAAAAACUGCGUGCCAGUCAUCCAGCGGAC	chr3:5024770-5025017(+)$1	247	5	45	17.1362
GGGGGCAACGGGGGGCUGGAAUUCUCGGACCCUCUGCCGC	chr17:1303241-1303488(-)$1	247	157	197	14.7934
GUGUGAUGAGAAAUGGGCUAAAUGGGCCCCUCUAAGUCCA	chr12:57882968-57883228(+)$1	260	15	55	14.4646
AUGAGGAGAAGGUAAGGGGUCCGCCUCUCUCUCUUACCUC	chr1:113162372-113162606(+)$1	234	122	162	12.6754
UGGAGGGAGUUGUGGGGGGCAGAGCUCCACUCCCUCUGAC	chr6:31749555-31749826(-)$1	271	225	265	12.7263
CGAUACUACAGGAAUUACUACGGGUACCAAGGGUAUCGGU	chr11:62482632-62482893(-)$1	261	81	121	15.5309
CGGCCGUGCGCCUGCUGCUUCCCGGAGAGCUGGCCAAGCA	chr6:26123791-26124026(-)$1	235	183	223	12.3587
CUGGUGCCCCUUGCCGAUCUGAGCGCUUGGCCAAGUACAA	chr1:8922897-8923103(-)$1	206	106	146	12.8086
AGGCUGUGAAGCCCAAGGCCGCUAAGCCCAAGGUUGUCAA	chr6:26055960-26056181(-)$1	221	96	136	15.4012
GCUUGCUGACGUGACCAGACGCUUGUCUGAGGAUUACGGC	chr19:12910971-12911214(-)$1	243	152	192	12.8599
GCUGCUCGGCCUCCUCGGCCUGGCCGUCGCCGAGCCUGCC	chr19:13049474-13049684(+)$1	210	39	79	12.7474
CCUCCUGCAAUAGCAGCCAGGUGGUGGUGGCUGUAGGCAG	chr11:61081752-61082029(-)$1	277	162	202	13.6106
GGAGUUGAAAGGUGACAUUGAGAAAUGCCUCACAGCUAUC	chr9:75780982-75781208(+)$1	226	85	125	13.3188
UCGGGCUUAUGCCAAAGAUGUAAAAUUUGGUGCAGAUGCC	chr2:198363394-198363660(-)$1	266	156	196	19.8810
CCAGCUCGCCACUGCCUGGGUCAGCCUGGCCACGGUGAGC	chr19:19015480-19015727(-)$1	247	114	154	13.0399
UCCAGGUAGUAAACCUAUUGAUGGCAAUUUUGCUGACUGU	chr2:20240583-20240858(-)$1	275	81	121	13.0382
CGACCAGGCCUUCGGGCUGCCCCGGCUGCCGGAGGAGUGG	chr7:75931949-75932207(+)$1	258	166	206	12.1673
GUUGCCCAGGCCCUAGAGGUCAUUCCUCGUACCCUGAUCC	chr1:156280764-156281029(-)$1	265	205	245	13.8179
UGUGGAUAUCCCCUUGGACAAAACUGUCGUCAAUAAGGAU	chr17:41154620-41154860(+)$1	240	75	115	13.0845
AAGGCUGAUGAAGGCAUCUCGUUCAGGUAUGUCAUCAGGA	chr1:45980521-45980745(-)$1	224	175	215	15.2812
CCUACCACCUUCAGAGAAGCUGCUGCUGGCUUGGACUGCG	chrX:55035623-55035869(-)$1	246	79	119	12.7169
UCUUCAGCUCGCCAUGGAUCCCAACUGCUCCUGCGCCGCC	chr16:56642450-56642696(+)$1	246	104	144	14.1576
CACGUAGCAAUCAGCCCUAUUACAAUAGUCGUGGUGUGUC	chr11:34118035-34118319(+)$1	284	77	117	14.4756
AGCUGCAGGAGGAAACGCCACCUGGUGGUCCUUUAACUGA	chr8:125561997-125562213(+)$1	216	11	51	12.5092
GUGACCCUGAUGAUGGAUGCCACCAAUAUGCCAGCUGUCA	chr8:11688925-11689159(+)$1	234	185	225	11.6538
AGUACUUUGCUGACAGGGACAUGUUCUGUGCUGGCCGAGU	chr2:73476094-73476402(+)$1	308	142	182	12.4314
GGGGCCGGCGCGCCGGUGUAUCUGGCAGCGGUGCUGGAGU	chr6:27100912-27101174(+)$1	262	70	110	11.8788
CGUGGCUGAGGUGCUGGUGCUGGUCACCAUCAUCUUCAUC	chr19:581465-581691(+)$1	226	49	89	12.5044
UUGGUGAUGGAGCCUGUGGAAAGACAUGCUUGCUCAUAGU	chr3:49412765-49413009(-)$1	244	18	58	16.6310
CCUGGGUGGAUGGGACUCGGAGAAGAGCCCUUCUCACUCC	chr16:30081368-30081626(+)$1	258	11	51	13.1977
CCUGUGUUUUCCAAAGGUGAGUAGUCACAAGGACAUACAG	chr1:24019064-24019305(+)$1	241	169	209	15.1376
GUGCUGAAUGGCUGAGGACCUUCCCAGUCUCCCCAGAGUC	chr12:56555069-56555298(+)$1	229	115	155	11.2075
CACCCAGAGGCUAUAGCCUGGGCAGGGCUUGGCACCUGUG	chr17:26900664-26900903(-)$1	239	185	225	11.9284
UGACAUUGACCUCAUGGCACCUCAGCCAGGGGUGUAGCCA	chr6:41756940-41757175(+)$1	235	89	129	11.8582
AUAGCCCAGUGGAUGGCCAUUCCAGGUGAGGCACGGGGCA	chr16:2292976-2293254(-)$1	278	183	223	14.0117
UCUUCAGCAUGUCCUCGGUGCUGGGCCACAUGUCAAGAGG	chr16:21983190-21983428(+)$1	238	150	190	13.6776
CGUGGUCGUGGCCGCCCCCACUGAGAGGCACCCCACCCAU	chr2:73479850-73480097(+)$1	247	115	155	14.4231
UGAUGCUUUUGGCACUGCUCACAGAGCCCACAGGUACCAA	chrX:77372793-77373012(+)$1	219	86	126	13.6716
UCUGCUGCAUCAAAACAGAAUAAGCUGGAGCAAGUAGAAA	chr21:35284492-35284732(-)$1	240	80	120	13.6386
GUACUUUGGAACUGUACCUUGGAUGGUUUUGUUUAUUAAA	chr6:170844166-170844418(-)$1	252	155	195	16.0075
CAGCUGGAUCCUGAUUGCAGAGGAUGCUGUCAGGAGGAAG	chr1:87368882-87369155(-)$1	273	132	172	12.8829
GCCAAGUAAGCUGUGGGCAGGCAAGCCCUUCGGUCACCUG	chr1:8921315-8921552(-)$1	237	125	165	12.8879
CAUCAUCAUUGGACAGGAGUCAAUCACCUAUCACAAUGGU	chr11:61093043-61093281(-)$1	238	123	163	13.6231
CUCACGUGGGUUGGCUGCUUGUGCGCAAACACCCAGCUGU	chr10:102114169-102114436(+)$1	267	111	151	13.4892
CCCAGAGACAUGUCCUCCAAAGCGCUGGGUUGCCAUGUUU	chr15:72502587-72502807(-)$1	220	167	207	14.1967
GUGAGCAGUUGGUUACAGCGCUGUGUGAUAUCAAACAAGC	chr15:78837114-78837394(+)$1	280	128	168	12.5541
AGCCUGAGCGGGAGGUGCGAGGUGCGCGGGGCCGGGCCGG	chr2:85843400-85843689(+)$1	289	165	205	16.6364
CAGCAUAUUAUUUACUUUGUUUCAGGUACCUAUGGAGUUG	chr10:62544384-62544672(+)$1	288	53	93	14.2362
CCUGUGUUUUCCAAAGGUGAGUAGUCACAAGGACAUACAG	chr1:24019134-24019349(+)$1	215	99	139	15.1376
ACAGCUGGUUGUAUGUGUGGUUUCACAGGACAUUAGCUGU	chr8:48739227-48739461(-)$1	234	11	51	13.1124
ACGGGCUGCGCACCACAGAGGAGGCUCUCCAUGCCAGCCA	chr19:19638824-19639090(+)$1	266	49	89	15.2099
GGGGUGGUGAAGGGCAAGGUCCAGCCUUAUGAUUCCCACU	chr19:59058648-59058867(+)$1	219	48	88	13.1172
GAUGGGUACCCUCCUCAUCAGCAAGAUCCGGGAGGAGUAC	chr9:140136911-140137155(+)$1	244	196	236	13.2580
AGCGGCGACACUCCUGUGGACUUCUUCUUCGAGUUCUGCG	chr7:5644898-5645153(+)$1	255	54	94	12.5389

#DB
..(((((((((.(((..(......)..)))))))...)))	chr6:31783328-31783649(+)$1	1	12	52	12.5822
(((((.(.....(((((((......)))))))....))))	chr6:31609581-31609822(-)$1	1	146	186	11.6114
.(((((((((.((...(((.....)))..)).))))))))	chrX:71495919-71496166(-)$1	1	97	137	14.1408
(((((((..(((...((((.....))))..)))...))))	chr3:5024770-5025017(+)$1	1	5	45	17.1362
((.(((..(((((((((((.....)))).)))))))..))	chr17:1303241-1303488(-)$1	1	157	197	14.7934
(((.(((.(((...(((((.....))))).)))..)))))	chr12:57882968-57883228(+)$1	1	15	55	14.4646
..((((((((((..(((((....)))))..).)))..)))	chr1:113162372-113162606(+)$1	1	122	162	12.6754
.(((((((((.....(((((...)))))))))))))))))	chr6:31749555-31749826(-)$1	1	225	265	12.7263
(((((((...((...((((...))))))...)))))))))	chr11:62482632-62482893(-)$1	1	81	121	15.5309
((((.(((((((.(((.(((....)))))).)))...)))	chr6:26123791-26124026(-)$1	1	183	223	12.3587
(((((....((((((((.(.....).)))).))))....)	chr1:8922897-8923103(-)$1	1	106	146	12.8086
(((((.(((((((...(((......)))...)))).))))	chr6:26055960-26056181(-)$1	1	96	136	15.4012
((.(((((..((...(((((....)))))...))..))))	chr19:12910971-12911214(-)$1	1	152	192	12.8599
((.(((((((.....((((...))))..)))))))..)).	chr19:13049474-13049684(+)$1	1	39	79	12.7474
)))(((((.(((((.((((.....)))).)))))..))))	chr11:61081752-61082029(-)$1	1	162	202	13.6106
(((((((..(((...((((....)))))))..))))).))	chr9:75780982-75781208(+)$1	1	85	125	13.3188
((((((...(((...((((.....))))...)))...)))	chr2:198363394-198363660(-)$1	1	156	196	19.8810
)))(((((((...(((.((.....)).)))...)))))))	chr19:19015480-19015727(-)$1	1	114	154	13.0399
(.(((..((((((...((((....))))))))))..))).	chr2:20240583-20240858(-)$1	1	81	121	13.0382
((((((..(((((((((((...))))..)))))))..)))	chr7:75931949-75932207(+)$1	1	166	206	12.1673
(.....((((.....((((.....))))....))))...)	chr1:156280764-156281029(-)$1	1	205	245	13.8179
((.((((((((..(((((((....))))..)))...))))	chr17:41154620-41154860(+)$1	1	75	115	13.0845
))))(((((((....((((.....))))...)))))))..	chr1:45980521-45980745(-)$1	1	175	215	15.2812
((((((.(..((.(((.(((....)))..))).))..).)	chrX:55035623-55035869(-)$1	1	79	119	12.7169
(((((.((.(((...(((.(......).))).)))..)).	chr16:56642450-56642696(+)$1	1	104	144	14.1576
((((..(((((((...((((....))))...)))).))).	chr11:34118035-34118319(+)$1	1	77	117	14.4756
((((.((((((((..((((....)))).)))))...))).	chr8:125561997-125562213(+)$1	1	11	51	12.5092
.((((.((((((.(((......))).)))..)))..))))	chr8:11688925-11689159(+)$1	1	185	225	11.6538
(((((((.((((.((.(((.....))).)).)))).))))	chr2:73476094-73476402(+)$1	1	142	182	12.4314
((((((.(.((((((.(((.....))).))))))).).))	chr6:27100912-27101174(+)$1	1	70	110	11.8788
(((((.(((((((.(((((.....))))).)))).))).)	chr19:581465-581691(+)$1	1	49	89	12.5044
((((.(((.((((.((((......))))...))))...))	chr3:49412765-49413009(-)$1	1	18	58	16.6310
...(((((((((((((((......)))....))))).)))	chr16:30081368-30081626(+)$1	1	11	51	13.1977
(.(((((..(((....((((....))))..))).))))))	chr1:24019064-24019305(+)$1	1	169	209	15.1376
((.(((...(((((.(((...))))))))....))).).)	chr12:56555069-56555298(+)$1	1	115	155	11.2075
(.(((((..((((.(((((.....)))))))))..))).)	chr17:26900664-26900903(-)$1	1	185	225	11.9284
(.((....(((((.((((......))))))))))).))))	chr6:41756940-41757175(+)$1	1	89	129	11.8582
((.((((.(((..(.(((......))).)..))).)))))	chr16:2292976-2293254(-)$1	1	183	223	14.0117
(((((.((((((....(((.....)))))))))...))))	chr16:21983190-21983428(+)$1	1	150	190	13.6776
(((((..((((..(((.(......).)))...))))....	chr2:73479850-73480097(+)$1	1	115	155	14.4231
((.(((((.(((....((((...))))))).))))).)).	chrX:77372793-77373012(+)$1	1	86	126	13.6716
((((((((.((....(((......))))))).))))))))	chr21:35284492-35284732(-)$1	1	80	120	13.6386
((((((((((((...(((......)))...))).......	chr6:170844166-170844418(-)$1	1	155	195	16.0075
..(((...(((((((.(((.....))).)))))))...))	chr1:87368882-87369155(-)$1	1	132	172	12.8829
(((((....((((.((((......))))..))))......	chr1:8921315-8921552(-)$1	1	125	165	12.8879
..(((((((((((.(((.(.....).))).)).)))))))	chr11:61093043-61093281(-)$1	1	123	163	13.6231
((((..(((((.(..(((......)))..))))))..)).	chr10:102114169-102114436(+)$1	1	111	151	13.4892
)..(((((((((...((((......))))....)))))))	chr15:72502587-72502807(-)$1	1	167	207	14.1967
((((((..(((((((((......))))))..)))....))	chr15:78837114-78837394(+)$1	1	128	168	12.5541
((((((..(.((...((((.....))))...)).)..)))	chr2:85843400-85843689(+)$1	1	165	205	16.6364
((((.(((....(((((......)))))...)))..))))	chr10:62544384-62544672(+)$1	1	53	93	14.2362
(.(((((..(((....((((....))))..))).))))))	chr1:24019134-24019349(+)$1	1	99	139	15.1376
(((((((((.((.(.((((....)))).))))))))))))	chr8:48739227-48739461(-)$1	1	11	51	13.1124
...(((((.(((....((((....))))...)))))))))	chr19:19638824-19639090(+)$1	1	49	89	15.2099
(((((((.(((....(((((...)))))....))))))).	chr19:59058648-59058867(+)$1	1	48	88	13.1172
..(((((((((((((.(((.....)))..)))))).))))	chr9:140136911-140137155(+)$1	1	196	236	13.2580
.((((....((((....(((.....)))..)))).)))).	chr7:5644898-5645153(+)$1	1	54	94	12.5389

#PSSM
g : 0.17	f : 0.12	e : 0.10	c : 0.08	! : 0.08	i : 0.08	b : 0.08	h : 0.07	d : 0.07	" : 0.03	% : 0.01	[ : 0.01	$ : 0.01	: : 0.01	
g : 0.17	f : 0.10	i : 0.08	e : 0.08	[ : 0.08	h : 0.07	c : 0.07	b : 0.07	d : 0.07	! : 0.05	" : 0.03	$ : 0.03	: : 0.03	a : 0.01	
g : 0.19	e : 0.15	f : 0.12	[ : 0.12	i : 0.10	c : 0.07	h : 0.05	d : 0.05	b : 0.05	$ : 0.03	: : 0.01	" : 0.01	
g : 0.22	e : 0.21	i : 0.12	f : 0.10	d : 0.08	h : 0.07	c : 0.07	b : 0.07	[ : 0.01	$ : 0.01	
e : 0.19	g : 0.17	i : 0.12	c : 0.10	f : 0.08	[ : 0.07	d : 0.07	h : 0.05	a : 0.03	! : 0.03	$ : 0.01	b : 0.01	# : 0.01	
e : 0.15	g : 0.15	i : 0.12	c : 0.12	[ : 0.10	# : 0.07	! : 0.07	f : 0.05	d : 0.05	h : 0.03	$ : 0.01	a : 0.01	" : 0.01	
e : 0.17	c : 0.15	i : 0.12	! : 0.10	g : 0.08	d : 0.07	# : 0.07	" : 0.05	h : 0.03	f : 0.03	[ : 0.03	b : 0.03	a : 0.01	
! : 0.15	c : 0.12	i : 0.10	e : 0.08	g : 0.08	d : 0.07	[ : 0.07	" : 0.07	# : 0.07	f : 0.05	a : 0.03	b : 0.03	$ : 0.01	h : 0.01	
c : 0.15	g : 0.14	! : 0.12	[ : 0.12	i : 0.10	d : 0.08	# : 0.07	" : 0.05	e : 0.05	f : 0.03	$ : 0.01	h : 0.01	a : 0.01	
c : 0.28	d : 0.21	g : 0.12	e : 0.08	i : 0.07	f : 0.07	! : 0.03	[ : 0.03	$ : 0.01	" : 0.01	h : 0.01	b : 0.01	# : 0.01	
c : 0.28	d : 0.19	b : 0.10	e : 0.10	$ : 0.07	g : 0.07	f : 0.07	i : 0.03	[ : 0.01	" : 0.01	h : 0.01	# : 0.01	
c : 0.19	d : 0.15	b : 0.12	e : 0.08	f : 0.08	$ : 0.07	# : 0.07	g : 0.05	! : 0.05	[ : 0.03	" : 0.03	a : 0.01	i : 0.01	
" : 0.19	d : 0.14	# : 0.14	e : 0.10	[ : 0.08	g : 0.07	! : 0.07	f : 0.07	$ : 0.05	b : 0.03	c : 0.01	a : 0.01	
" : 0.24	# : 0.15	c : 0.12	[ : 0.10	g : 0.07	e : 0.07	! : 0.05	$ : 0.05	f : 0.05	a : 0.03	d : 0.01	b : 0.01	
" : 0.22	# : 0.15	c : 0.14	e : 0.10	g : 0.07	d : 0.07	[ : 0.07	$ : 0.05	f : 0.05	! : 0.03	b : 0.01	
d : 0.31	c : 0.24	e : 0.14	# : 0.10	" : 0.07	[ : 0.07	! : 0.01	g : 0.01	f : 0.01	
d : 0.43	c : 0.26	e : 0.14	[ : 0.07	! : 0.01	g : 0.01	o : 0.01	f : 0.01	# : 0.01	
d : 0.42	c : 0.29	e : 0.12	o : 0.05	a : 0.03	[ : 0.03	g : 0.01	b : 0.01	
d : 0.36	o : 0.22	c : 0.17	e : 0.12	a : 0.03	g : 0.01	b : 0.01	[ : 0.01	l : 0.01	
n : 0.33	o : 0.28	d : 0.12	m : 0.07	l : 0.07	e : 0.05	c : 0.05	a : 0.01	
n : 0.35	o : 0.29	m : 0.22	l : 0.12	
n : 0.35	o : 0.29	m : 0.22	l : 0.10	c : 0.01	
n : 0.35	o : 0.28	m : 0.22	l : 0.05	d : 0.05	c : 0.03	
n : 0.35	o : 0.24	m : 0.15	d : 0.12	e : 0.07	c : 0.03	f : 0.01	
d : 0.40	c : 0.24	e : 0.15	a : 0.07	o : 0.07	b : 0.01	f : 0.01	n : 0.01	
d : 0.42	c : 0.26	e : 0.15	] : 0.07	2 : 0.01	g : 0.01	b : 0.01	o : 0.01	f : 0.01	
d : 0.38	c : 0.31	e : 0.15	2 : 0.05	g : 0.01	b : 0.01	] : 0.01	a : 0.01	f : 0.01	
d : 0.31	c : 0.17	e : 0.15	] : 0.12	2 : 0.10	b : 0.03	f : 0.03	g : 0.01	4 : 0.01	3 : 0.01	
2 : 0.19	3 : 0.17	c : 0.15	e : 0.12	g : 0.07	f : 0.07	4 : 0.05	] : 0.03	d : 0.03	b : 0.03	a : 0.03	i : 0.01	
3 : 0.21	2 : 0.17	c : 0.12	g : 0.08	4 : 0.08	b : 0.07	f : 0.07	] : 0.05	e : 0.05	d : 0.03	i : 0.01	a : 0.01	
3 : 0.21	c : 0.14	d : 0.08	g : 0.08	4 : 0.08	b : 0.07	] : 0.07	e : 0.07	2 : 0.07	f : 0.07	a : 0.01	i : 0.01	
c : 0.24	d : 0.17	g : 0.10	e : 0.10	] : 0.07	f : 0.07	4 : 0.07	i : 0.05	3 : 0.05	b : 0.03	2 : 0.01	
c : 0.28	d : 0.21	e : 0.12	g : 0.10	i : 0.07	f : 0.07	4 : 0.05	b : 0.03	] : 0.03	3 : 0.01	
d : 0.19	c : 0.19	g : 0.12	i : 0.10	e : 0.08	3 : 0.07	b : 0.05	f : 0.05	] : 0.05	2 : 0.03	4 : 0.01	> : 0.01	
3 : 0.12	g : 0.12	2 : 0.12	d : 0.12	e : 0.12	i : 0.10	c : 0.07	] : 0.05	4 : 0.03	b : 0.03	a : 0.03	> : 0.01	6 : 0.01	f : 0.01	
2 : 0.21	3 : 0.15	i : 0.10	] : 0.10	e : 0.10	d : 0.08	g : 0.07	c : 0.07	4 : 0.05	> : 0.01	6 : 0.01	
2 : 0.14	c : 0.12	e : 0.12	3 : 0.10	i : 0.10	g : 0.08	d : 0.07	h : 0.05	4 : 0.05	] : 0.05	a : 0.03	b : 0.01	> : 0.01	6 : 0.01	
e : 0.14	c : 0.12	g : 0.12	i : 0.08	d : 0.08	b : 0.08	f : 0.07	h : 0.05	4 : 0.05	3 : 0.05	] : 0.03	a : 0.03	2 : 0.01	> : 0.01	6 : 0.01	
e : 0.15	c : 0.14	g : 0.12	d : 0.10	i : 0.08	b : 0.08	f : 0.07	] : 0.07	h : 0.05	4 : 0.03	3 : 0.01	: : 0.01	> : 0.01	6 : 0.01	
e : 0.14	f : 0.12	i : 0.12	g : 0.12	c : 0.08	] : 0.07	h : 0.05	d : 0.05	2 : 0.05	b : 0.05	4 : 0.03	: : 0.01	3 : 0.01	= : 0.01	> : 0.01	6 : 0.01	

#score	779.6780223253413
#seq	57
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_CDS_m2_run1.txt

#BEAR
:eeeeevvvvvvvvvvvvveeeee:	chr12:132248995-132249307(+)$1	312	141	166	21.2636
ceeeeeuuuuuuuuuuuueeeee33	chr17:65889698-65889941(+)$1	243	52	77	23.7797
f[ddddtttttttttttdddd]fff	chr15:28386575-28386840(-)$1	265	148	173	23.4603
ggggggtttttttttttggggggg]	chr12:123067170-123067422(+)$1	252	145	170	23.8816
:eeeeettttttttttteeeeeddd	chr4:151836658-151836934(-)$1	276	34	59	22.1136
fffffftttttttttttffffff22	chr8:100205003-100205221(+)$1	218	168	193	22.5912
======vvvvvvvvvvvvv======	chr5:37027361-37027616(+)$1	255	41	66	23.6044
gggggguuuuuuuuuuuuggggggg	chr2:61449664-61449884(-)$1	220	61	86	23.9212
dddwwwwwwwwwwwwwwdddd]ggg	chr8:100513814-100514077(+)$1	263	14	39	19.8124
[eeeeettttttttttteeeee22d	chr16:30712010-30712252(+)$1	242	46	71	23.2261
f"""bbuuuuuuuuuuuubb22fff	chr2:55526917-55527156(-)$1	239	89	114	22.2450
c!!bbwwwwwwwwwwwwwwbb22cc	chr1:154574922-154575177(-)$1	255	41	66	20.4868
%%%bbuuuuuuuuuuuubb4444ff	chr15:28422467-28422705(-)$1	238	165	190	19.2692
ggggggwwwwwwwwwwwwwwggggg	chr9:116997819-116998032(+)$1	213	1	26	21.9281
[eeeeettttttttttteeeeeccc	chr17:26950819-26951078(-)$1	259	42	67	23.7423
hhhhhhuuuuuuuuuuuuhhhhhhh	chr1:22175289-22175512(-)$1	223	163	188	21.3026
eeeccctttttttttttccc333ee	chr12:49439636-49439850(-)$1	214	60	85	23.4311
ee!!bbuuuuuuuuuuuubb22eee	chr2:32836502-32836713(+)$1	211	10	35	22.2917
gggggguuuuuuuuuuuuggggggg	chr15:62212375-62212625(-)$1	250	102	127	23.9212
[eeeeeuuuuuuuuuuuueeeee]c	chr21:38507602-38507882(+)$1	280	77	102	23.7528
ggggggtttttttttttggggggg3	chr17:78261921-78262219(+)$1	298	157	182	23.9038
fffffftttttttttttffffff33	chr20:37128041-37128337(+)$1	296	70	95	23.0206
c[ddddtttttttttttdddd]ccc	chr12:26864025-26864242(-)$1	217	171	196	23.5274
"eeeeettttttttttteeeee22b	chr1:19493415-19493623(-)$1	208	156	181	22.9921
ccc[bbuuuuuuuuuuuubbccccc	chr15:28356966-28357212(-)$1	246	50	75	22.6620
ffffffuuuuuuuuuuuuffffffG	chr12:26780865-26781138(-)$1	273	223	248	22.4316
!!ddddwwwwwwwwwwwwwwdddd2	chr7:100282376-100282608(-)$1	232	20	45	20.8813
[eeeeettttttttttteeeeeddd	chr5:74109566-74109831(-)$1	265	177	202	23.2485
bb[cccuuuuuuuuuuuuccc]bb]	chr11:637282-637542(+)$1	260	20	45	22.6548
"eeeeettttttttttteeeee444	chr12:49421497-49421747(-)$1	250	112	137	23.4511
[eeeeettttttttttteeeee333	chr14:39645630-39645835(+)$1	205	106	131	23.9569
ggggggtttttttttttggggggg5	chr5:14291065-14291345(+)$1	280	62	87	23.0385
fff[bbvvvvvvvvvvvvvbb]fff	chr3:47098453-47098766(-)$1	313	83	108	22.4023
ggggggtttttttttttggggggg2	chrX:53581687-53581915(-)$1	228	148	173	23.6856
eeeeewwwwwwwwwwwwwweeeee:	chr6:144780374-144780590(+)$1	216	19	44	20.5736
e[cccyyyyyyyyyyyyyyyyccce	chr16:18852790-18853042(-)$1	252	52	77	20.4163
hhhhhhttttttttttthhhhhhhh	chr1:19512934-19513169(-)$1	235	185	210	20.9773
ff"""attttttttttta333ffff	chr13:49688700-49688968(+)$1	268	183	208	23.1569
=====yyyyyyyyyyyyyyyy====	chr2:47643334-47643581(+)$1	247	15	40	20.9793
hhhhhhuuuuuuuuuuuuhhhhhhh	chr16:18865915-18866151(-)$1	236	199	224	21.3026
ddd[bbtttttttttttbb]dddd]	chr2:27458059-27458314(+)$1	255	6	31	21.9808
ddddvvvvvvvvvvvvvdddd]fff	chr6:56351809-56352105(-)$1	296	236	261	21.4630
eeeeevvvvvvvvvvvvveeeee:e	chr13:79929257-79929510(-)$1	253	30	55	21.7852
!!ddddvvvvvvvvvvvvvdddddd	chr9:117014774-117015019(+)$1	245	23	48	22.3793
f[ddddtttttttttttdddd]fff	chr15:28386537-28386775(-)$1	238	83	108	23.4603
a[ddddtttttttttttdddd22a]	chr6:32945897-32946149(+)$1	252	41	66	23.0721
iiiiiiwwwwwwwwwwwwwwiiiii	chr1:55559605-55559835(-)$1	230	141	166	21.8256
iiiiiitttttttttttiiiiiiii	chr5:139820589-139820825(+)$1	236	85	110	23.5713
ggggggwwwwwwwwwwwwwwggggg	chr10:21823472-21823729(+)$1	257	47	72	21.9281
e[ddddtttttttttttdddd]eee	chr10:93740165-93740405(+)$1	240	89	114	23.2116
ffffffuuuuuuuuuuuuffffff:	chr1:19444227-19444488(-)$1	261	61	86	22.0629
c[ddddtttttttttttdddd]ccc	chr2:128848779-128849056(+)$1	277	232	257	23.5274
c[ddddtttttttttttdddd]ccc	chr4:85701229-85701531(-)$1	302	172	197	23.5274
======wwwwwwwwwwwwww=====	chr16:23101922-23102187(-)$1	265	19	44	21.9583
ffffffwwwwwwwwwwwwwwfffff	chr2:32822897-32823126(+)$1	229	128	153	21.0222
fffffftttttttttttffffff::	chr15:28436023-28436273(-)$1	250	93	118	20.9442
ffffffvvvvvvvvvvvvvffffff	chr5:73163617-73163913(+)$1	296	94	119	22.5780
:cccvvvvvvvvvvvvvccc:ffff	chr17:15995078-15995327(-)$1	249	189	214	19.7506

#otherMatches

#Seq PSSM
UGCUGCAAACACUAACCCAGCAGUU	chr12:132248995-132249307(+)$1	312	141	166	21.2636
UUCUUACCAUAUCUACUCUGAGACU	chr17:65889698-65889941(+)$1	243	52	77	23.7797
CAUUGAAGGCGCAAAAGUCAAAGUU	chr15:28386575-28386840(-)$1	265	148	173	23.4603
GUGAGCAGCACAUUAAAGCUCACGA	chr12:123067170-123067422(+)$1	252	145	170	23.8816
AACUGUUUUUUGCUUCUGCAGUGGU	chr4:151836658-151836934(-)$1	276	34	59	22.1136
CAAGAGCACAGACACUUCUCUUGCA	chr8:100205003-100205221(+)$1	218	168	193	22.5912
AUAUUUUAUUCACAUUUAUAAAUAU	chr5:37027361-37027616(+)$1	255	41	66	23.6044
UGAAAUCCUCCUCUUUCUGUUUUAG	chr2:61449664-61449884(-)$1	220	61	86	23.9212
UAAUUUCUGAUUUUAAUUUAUAAUU	chr8:100513814-100514077(+)$1	263	14	39	19.8124
AGCCGGACGCCAGCCCCUCGGCCAG	chr16:30712010-30712252(+)$1	242	46	71	23.2261
UUUUUCAUUUAGCUUCAAGACCAGC	chr2:55526917-55527156(-)$1	239	89	114	22.2450
AUUCAUUUUCUUUUUCCACUGUCUU	chr1:154574922-154575177(-)$1	255	41	66	20.4868
UUUGCUAAUAAGAAACUGUUUCUGA	chr15:28422467-28422705(-)$1	238	165	190	19.2692
GAGGCUUCCAGAACCCACGUGGCCU	chr9:116997819-116998032(+)$1	213	1	26	21.9281
CACUAACCUCAUCGUCCUUGGUAGC	chr17:26950819-26951078(-)$1	259	42	67	23.7423
UGGGGGACCCCGACUGCACCCUCAG	chr1:22175289-22175512(-)$1	223	163	188	21.3026
ACAGGACCUCAGCCACCUCCGUUUG	chr12:49439636-49439850(-)$1	214	60	85	23.4311
AGGUAAUACACAAACAUUUUUACUU	chr2:32836502-32836713(+)$1	211	10	35	22.2917
CAGAGGGCACUGCUUCUACUUUUGA	chr15:62212375-62212625(-)$1	250	102	127	23.9212
GAUUUUGCUAAUAUAAUGAAAAUGC	chr21:38507602-38507882(+)$1	280	77	102	23.7528
UUGCCUGAGUCAAAAGGAGGCAGCU	chr17:78261921-78262219(+)$1	298	157	182	23.9038
AGAGAAGUUGAUUGGUGUUCUCUUU	chr20:37128041-37128337(+)$1	296	70	95	23.0206
GACUCUGAAUUAGUGAAAGAGGCAG	chr12:26864025-26864242(-)$1	217	171	196	23.5274
UCAGUGAAAUGUACUAACACUGCUG	chr1:19493415-19493623(-)$1	208	156	181	22.9921
CUCCAGACCACUUCCUCCCUGAGUC	chr15:28356966-28357212(-)$1	246	50	75	22.6620
UUGAAAGUACCUAUCAUAUUUUAAA	chr12:26780865-26781138(-)$1	273	223	248	22.4316
uccauccccauccccaUCCUGAUGU	chr7:100282376-100282608(-)$1	232	20	45	20.8813
UAAGUUAAAAAAUAAUAAACUUGUC	chr5:74109566-74109831(-)$1	265	177	202	23.2485
CCAUGGGGAACCGCAGCACCGCGGA	chr11:637282-637542(+)$1	260	20	45	22.6548
CUGGCUAUACCCUGAAGAGCCAACU	chr12:49421497-49421747(-)$1	250	112	137	23.4511
AUUCUCAGAUAGUGGAGGAGGACCC	chr14:39645630-39645835(+)$1	205	106	131	23.9569
CUGCUUCAGAGGAUACAGAGCAGUG	chr5:14291065-14291345(+)$1	280	62	87	23.0385
GUGUUCUCCUGCUCCUUAUGAUCAU	chr3:47098453-47098766(-)$1	313	83	108	22.4023
UCCCAACCCCACCAGCUUUGGGAGA	chrX:53581687-53581915(-)$1	228	148	173	23.6856
GCCCCAGAUUUUGUCCAGCGGGGCU	chr6:144780374-144780590(+)$1	216	19	44	20.5736
UAGGAACAAGAUCAGGACUAAUCCA	chr16:18852790-18853042(-)$1	252	52	77	20.4163
AGGAGUGUUCUCAGCAGAUUCCUGU	chr1:19512934-19513169(-)$1	235	185	210	20.9773
UUUUUCUUUUCAUAUUUGUAUAAUA	chr13:49688700-49688968(+)$1	268	183	208	23.1569
GUUAUUGUUCCUCUGUUUUUCAUGG	chr2:47643334-47643581(+)$1	247	15	40	20.9793
ACAUGAGUAUAAUAAAAAUCAUGUA	chr16:18865915-18866151(-)$1	236	199	224	21.3026
AGGUCCUCUCACACCUUGGCCCUCU	chr2:27458059-27458314(+)$1	255	6	31	21.9808
UGUAGACCUCUUUCAAAUACACAGU	chr6:56351809-56352105(-)$1	296	236	261	21.4630
UUUGCAACAUACGAAGAAGCAAAGA	chr13:79929257-79929510(-)$1	253	30	55	21.7852
CCUCUGCACCUGCCUCCCACAGAGC	chr9:117014774-117015019(+)$1	245	23	48	22.3793
CAUUGAAGGCGCAAAAGUCAAAGUU	chr15:28386537-28386775(-)$1	238	83	108	23.4603
CAGGGUCCAAUAUCCAAGCCCAAGA	chr6:32945897-32946149(+)$1	252	41	66	23.0721
CCGGCUGUCUAUUCUUACCAAGCUG	chr1:55559605-55559835(-)$1	230	141	166	21.8256
UGUGAAAUUAUUACUUCUUCAUGAU	chr5:139820589-139820825(+)$1	236	85	110	23.5713
AAGCACUAAUCGGCUUGCAUGUGUU	chr10:21823472-21823729(+)$1	257	47	72	21.9281
ACACAUUUUUCAGUUCUGUGUUUUG	chr10:93740165-93740405(+)$1	240	89	114	23.2116
GCUAAGACUGGUUUCUUCCUUAGCA	chr1:19444227-19444488(-)$1	261	61	86	22.0629
GGCCUCGUGGACAAAGAGAGGGUUU	chr2:128848779-128849056(+)$1	277	232	257	23.5274
GAUGUGGAAGGGUUAUAUGCAGCAG	chr4:85701229-85701531(-)$1	302	172	197	23.5274
UAAUUUUGAAGAGAUAAAAUGAGUU	chr16:23101922-23102187(-)$1	265	19	44	21.9583
UAUCAUGAAGGUAAAAAAUAAUGAU	chr2:32822897-32823126(+)$1	229	128	153	21.0222
UAUUGAACUAAAGACAAUCAAUAUU	chr15:28436023-28436273(-)$1	250	93	118	20.9442
AGAGACAUCCCACAGCCUGGUCUCU	chr5:73163617-73163913(+)$1	296	94	119	22.5780
AGGGAAAUAAAGCUAAACCCAAAAG	chr17:15995078-15995327(-)$1	249	189	214	19.7506

#DB
.(((((.............))))).	chr12:132248995-132249307(+)$1	1	141	166	21.2636
((((((............)))))..	chr17:65889698-65889941(+)$1	1	52	77	23.7797
(.((((...........)))).)))	chr15:28386575-28386840(-)$1	1	148	173	23.4603
((((((...........))))))).	chr12:123067170-123067422(+)$1	1	145	170	23.8816
.(((((...........)))))(((	chr4:151836658-151836934(-)$1	1	34	59	22.1136
((((((...........))))))..	chr8:100205003-100205221(+)$1	1	168	193	22.5912
((((((.............))))))	chr5:37027361-37027616(+)$1	1	41	66	23.6044
((((((............)))))))	chr2:61449664-61449884(-)$1	1	61	86	23.9212
(((..............)))).)))	chr8:100513814-100514077(+)$1	1	14	39	19.8124
.(((((...........)))))..)	chr16:30712010-30712252(+)$1	1	46	71	23.2261
(...((............))..)))	chr2:55526917-55527156(-)$1	1	89	114	22.2450
(..((..............))..))	chr1:154574922-154575177(-)$1	1	41	66	20.4868
...((............))....))	chr15:28422467-28422705(-)$1	1	165	190	19.2692
((((((..............)))))	chr9:116997819-116998032(+)$1	1	1	26	21.9281
.(((((...........))))))))	chr17:26950819-26951078(-)$1	1	42	67	23.7423
((((((............)))))))	chr1:22175289-22175512(-)$1	1	163	188	21.3026
((((((...........)))...))	chr12:49439636-49439850(-)$1	1	60	85	23.4311
((..((............))..)))	chr2:32836502-32836713(+)$1	1	10	35	22.2917
((((((............)))))))	chr15:62212375-62212625(-)$1	1	102	127	23.9212
.(((((............))))).)	chr21:38507602-38507882(+)$1	1	77	102	23.7528
((((((...........))))))).	chr17:78261921-78262219(+)$1	1	157	182	23.9038
((((((...........))))))..	chr20:37128041-37128337(+)$1	1	70	95	23.0206
(.((((...........)))).)))	chr12:26864025-26864242(-)$1	1	171	196	23.5274
.(((((...........)))))..)	chr1:19493415-19493623(-)$1	1	156	181	22.9921
(((.((............)))))))	chr15:28356966-28357212(-)$1	1	50	75	22.6620
((((((............)))))))	chr12:26780865-26781138(-)$1	1	223	248	22.4316
..((((..............)))).	chr7:100282376-100282608(-)$1	1	20	45	20.8813
.(((((...........))))))))	chr5:74109566-74109831(-)$1	1	177	202	23.2485
((.(((............))).)).	chr11:637282-637542(+)$1	1	20	45	22.6548
.(((((...........)))))...	chr12:49421497-49421747(-)$1	1	112	137	23.4511
.(((((...........)))))...	chr14:39645630-39645835(+)$1	1	106	131	23.9569
((((((...........))))))).	chr5:14291065-14291345(+)$1	1	62	87	23.0385
(((.((.............)).)))	chr3:47098453-47098766(-)$1	1	83	108	22.4023
((((((...........))))))).	chrX:53581687-53581915(-)$1	1	148	173	23.6856
(((((..............))))).	chr6:144780374-144780590(+)$1	1	19	44	20.5736
(.(((................))))	chr16:18852790-18853042(-)$1	1	52	77	20.4163
((((((...........))))))))	chr1:19512934-19513169(-)$1	1	185	210	20.9773
((...(...........)...))))	chr13:49688700-49688968(+)$1	1	183	208	23.1569
(((((................))))	chr2:47643334-47643581(+)$1	1	15	40	20.9793
((((((............)))))))	chr16:18865915-18866151(-)$1	1	199	224	21.3026
(((.((...........)).)))).	chr2:27458059-27458314(+)$1	1	6	31	21.9808
((((.............)))).)))	chr6:56351809-56352105(-)$1	1	236	261	21.4630
(((((.............))))).(	chr13:79929257-79929510(-)$1	1	30	55	21.7852
..((((.............))))))	chr9:117014774-117015019(+)$1	1	23	48	22.3793
(.((((...........)))).)))	chr15:28386537-28386775(-)$1	1	83	108	23.4603
(.((((...........))))..).	chr6:32945897-32946149(+)$1	1	41	66	23.0721
((((((..............)))))	chr1:55559605-55559835(-)$1	1	141	166	21.8256
((((((...........))))))))	chr5:139820589-139820825(+)$1	1	85	110	23.5713
((((((..............)))))	chr10:21823472-21823729(+)$1	1	47	72	21.9281
(.((((...........)))).)))	chr10:93740165-93740405(+)$1	1	89	114	23.2116
((((((............)))))).	chr1:19444227-19444488(-)$1	1	61	86	22.0629
(.((((...........)))).)))	chr2:128848779-128849056(+)$1	1	232	257	23.5274
(.((((...........)))).)))	chr4:85701229-85701531(-)$1	1	172	197	23.5274
((((((..............)))))	chr16:23101922-23102187(-)$1	1	19	44	21.9583
((((((..............)))))	chr2:32822897-32823126(+)$1	1	128	153	21.0222
((((((...........))))))..	chr15:28436023-28436273(-)$1	1	93	118	20.9442
((((((.............))))))	chr5:73163617-73163913(+)$1	1	94	119	22.5780
.(((.............))).((((	chr17:15995078-15995327(-)$1	1	189	214	19.7506

#PSSM
f : 0.20	g : 0.13	c : 0.10	e : 0.10	[ : 0.08	: : 0.05	= : 0.05	d : 0.05	h : 0.05	" : 0.03	! : 0.03	i : 0.03	% : 0.01	b : 0.01	a : 0.01	
e : 0.24	f : 0.15	[ : 0.13	g : 0.13	= : 0.05	d : 0.05	! : 0.05	h : 0.05	c : 0.03	i : 0.03	" : 0.01	% : 0.01	b : 0.01	
e : 0.22	d : 0.20	g : 0.13	f : 0.13	= : 0.05	h : 0.05	c : 0.05	" : 0.03	! : 0.03	i : 0.03	% : 0.01	[ : 0.01	
e : 0.20	d : 0.17	g : 0.13	f : 0.12	c : 0.06	= : 0.05	h : 0.05	[ : 0.05	" : 0.03	b : 0.03	i : 0.03	w : 0.01	! : 0.01	
e : 0.20	d : 0.15	g : 0.13	f : 0.12	b : 0.12	= : 0.05	h : 0.05	c : 0.05	v : 0.03	i : 0.03	w : 0.01	" : 0.01	
e : 0.17	d : 0.15	g : 0.13	f : 0.12	b : 0.08	w : 0.05	h : 0.05	v : 0.05	= : 0.03	c : 0.03	y : 0.03	i : 0.03	u : 0.01	a : 0.01	
t : 0.44	u : 0.22	w : 0.15	v : 0.13	y : 0.03	
t : 0.44	u : 0.22	w : 0.15	v : 0.13	y : 0.03	
t : 0.44	u : 0.22	w : 0.15	v : 0.13	y : 0.03	
t : 0.44	u : 0.22	w : 0.15	v : 0.13	y : 0.03	
t : 0.44	u : 0.22	w : 0.15	v : 0.13	y : 0.03	
t : 0.44	u : 0.22	w : 0.15	v : 0.13	y : 0.03	
t : 0.44	u : 0.22	w : 0.15	v : 0.13	y : 0.03	
t : 0.44	u : 0.22	w : 0.15	v : 0.13	y : 0.03	
t : 0.44	u : 0.22	w : 0.15	v : 0.13	y : 0.03	
t : 0.44	u : 0.22	w : 0.15	v : 0.13	y : 0.03	
t : 0.44	u : 0.22	w : 0.15	v : 0.13	y : 0.03	
u : 0.20	d : 0.15	w : 0.13	e : 0.12	v : 0.10	g : 0.06	f : 0.05	b : 0.03	c : 0.03	y : 0.03	h : 0.01	a : 0.01	i : 0.01	
e : 0.17	d : 0.15	w : 0.13	g : 0.10	v : 0.08	f : 0.08	b : 0.08	h : 0.05	c : 0.05	y : 0.03	3 : 0.01	i : 0.01	
e : 0.20	d : 0.17	g : 0.10	f : 0.10	w : 0.10	b : 0.08	h : 0.05	c : 0.05	y : 0.03	= : 0.01	4 : 0.01	3 : 0.01	] : 0.01	i : 0.01	
e : 0.20	d : 0.20	g : 0.13	f : 0.12	h : 0.05	= : 0.03	2 : 0.03	b : 0.03	3 : 0.03	c : 0.03	y : 0.03	i : 0.03	4 : 0.01	: : 0.01	
e : 0.20	] : 0.17	f : 0.15	g : 0.13	2 : 0.06	= : 0.05	h : 0.05	d : 0.05	c : 0.03	i : 0.03	4 : 0.01	3 : 0.01	
f : 0.24	g : 0.15	e : 0.12	c : 0.10	d : 0.08	2 : 0.06	= : 0.05	h : 0.05	4 : 0.03	3 : 0.03	i : 0.03	b : 0.01	
f : 0.20	g : 0.15	c : 0.12	e : 0.08	d : 0.08	3 : 0.05	2 : 0.05	= : 0.05	h : 0.05	: : 0.03	i : 0.03	] : 0.01	b : 0.01	4 : 0.01	a : 0.01	
f : 0.17	c : 0.12	g : 0.08	e : 0.08	: : 0.06	3 : 0.06	] : 0.06	d : 0.06	2 : 0.05	= : 0.05	h : 0.05	i : 0.03	b : 0.01	G : 0.01	4 : 0.01	5 : 0.01	

#score	1299.3385808012606
#seq	58
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_CDS_m1_run2.txt

#BEAR
[ffffff!!eeeee[bb"""bbnnnnnbb333bb]eeee	chr5:138629682-138629995(+)$1	313	85	124	22.4538
gggggg"""eeeee[acccqqqqqqqqccc]a]eeeee2	chr20:3765587-3765877(-)$1	290	161	200	20.8356
ggggg$$$$$ccc!!ccc!!bbnnnnnbb22ccc22ccc	chr17:34171612-34171914(+)$1	302	125	164	22.1277
ggggggg"""dddd[dddd[bbqqqqqqqqbb]dddd33	chr13:113760978-113761308(+)$1	330	91	130	20.5789

#otherMatches

#Seq PSSM
GCGGGAGAUUUUGGGUGAAGAGGUGCGCUGACCGGCCGA	chr5:138629682-138629995(+)$1	313	85	124	22.4538
AGGCUGAGGACUGGGCCCAGGGAGUAGUGGAGGCCGGUG	chr20:3765587-3765877(-)$1	290	161	200	20.8356
uauggaggagaucgagguggcuauggaggagaccgaggu	chr17:34171612-34171914(+)$1	302	125	164	22.1277
GUGGGCUGUGAGGGACAGUGCCUGGGAUGUGGGGCUGCA	chr13:113760978-113761308(+)$1	330	91	130	20.5789

#DB
.((((((..(((((.((...((.....))...)).))))	chr5:138629682-138629995(+)$1	1	85	124	22.4538
((((((...(((((.((((........))).).))))).	chr20:3765587-3765877(-)$1	1	161	200	20.8356
(((((.....(((..(((..((.....))..)))..)))	chr17:34171612-34171914(+)$1	1	125	164	22.1277
(((((((...((((.((((.((........)).))))..	chr13:113760978-113761308(+)$1	1	91	130	20.5789

#PSSM
g : 0.75	[ : 0.25	
g : 0.75	f : 0.25	
g : 0.75	f : 0.25	
g : 0.75	f : 0.25	
g : 0.75	f : 0.25	
g : 0.50	f : 0.25	$ : 0.25	
f : 0.25	" : 0.25	$ : 0.25	g : 0.25	
" : 0.50	! : 0.25	$ : 0.25	
" : 0.50	! : 0.25	$ : 0.25	
e : 0.50	$ : 0.25	" : 0.25	
e : 0.50	c : 0.25	d : 0.25	
e : 0.50	c : 0.25	d : 0.25	
e : 0.50	c : 0.25	d : 0.25	
e : 0.50	! : 0.25	d : 0.25	
[ : 0.75	! : 0.25	
b : 0.25	a : 0.25	c : 0.25	d : 0.25	
c : 0.50	b : 0.25	d : 0.25	
c : 0.50	" : 0.25	d : 0.25	
" : 0.25	c : 0.25	! : 0.25	d : 0.25	
" : 0.25	q : 0.25	! : 0.25	[ : 0.25	
b : 0.75	q : 0.25	
b : 0.75	q : 0.25	
n : 0.50	q : 0.50	
n : 0.50	q : 0.50	
n : 0.50	q : 0.50	
n : 0.50	q : 0.50	
n : 0.50	q : 0.50	
b : 0.50	c : 0.25	q : 0.25	
b : 0.50	c : 0.25	q : 0.25	
3 : 0.25	c : 0.25	2 : 0.25	q : 0.25	
3 : 0.25	] : 0.25	2 : 0.25	b : 0.25	
3 : 0.25	a : 0.25	c : 0.25	b : 0.25	
] : 0.50	b : 0.25	c : 0.25	
b : 0.25	e : 0.25	c : 0.25	d : 0.25	
] : 0.25	e : 0.25	2 : 0.25	d : 0.25	
e : 0.50	2 : 0.25	d : 0.25	
e : 0.50	c : 0.25	d : 0.25	
e : 0.50	c : 0.25	3 : 0.25	
e : 0.25	2 : 0.25	c : 0.25	3 : 0.25	

#score	85.99621024617497
#seq	4
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF756RYJ_AARS_UTR_m3_run1.txt

#BEAR
e[dddd$$$$$ccc[cccmmmmcccccc22dddd]eeeee	chr9:100777607-100777855(+)$1	248	4	44	27.0453
##ccc####==========mmmm==========22ccc22	chr6:31698285-31698537(-)$1	252	17	57	28.7418

#otherMatches

#Seq PSSM
CACUGUCCUAAAGUCAAUUUUUGUUACUGUACagaggagg	chr9:100777607-100777855(+)$1	248	4	44	27.0453
GGGCAGGGAAUCCUGGAGCACUUGUUCCGGGAUGGUGUGG	chr6:31698285-31698537(-)$1	252	17	57	28.7418

#DB
(.((((.....(((.(((....))))))..)))).)))))	chr9:100777607-100777855(+)$1	1	4	44	27.0453
..(((....((((((((((....))))))))))..)))..	chr6:31698285-31698537(-)$1	1	17	57	28.7418

#PSSM
e : 0.50	# : 0.50	
[ : 0.50	# : 0.50	
d : 0.50	c : 0.50	
d : 0.50	c : 0.50	
d : 0.50	c : 0.50	
d : 0.50	# : 0.50	
$ : 0.50	# : 0.50	
$ : 0.50	# : 0.50	
$ : 0.50	# : 0.50	
$ : 0.50	= : 0.50	
$ : 0.50	= : 0.50	
c : 0.50	= : 0.50	
c : 0.50	= : 0.50	
c : 0.50	= : 0.50	
[ : 0.50	= : 0.50	
c : 0.50	= : 0.50	
c : 0.50	= : 0.50	
c : 0.50	= : 0.50	
m : 0.50	= : 0.50	
m : 1.00	
m : 1.00	
m : 1.00	
c : 0.50	m : 0.50	
c : 0.50	= : 0.50	
c : 0.50	= : 0.50	
c : 0.50	= : 0.50	
c : 0.50	= : 0.50	
c : 0.50	= : 0.50	
2 : 0.50	= : 0.50	
2 : 0.50	= : 0.50	
d : 0.50	= : 0.50	
d : 0.50	= : 0.50	
d : 0.50	= : 0.50	
d : 0.50	2 : 0.50	
] : 0.50	2 : 0.50	
e : 0.50	c : 0.50	
e : 0.50	c : 0.50	
e : 0.50	c : 0.50	
e : 0.50	2 : 0.50	
e : 0.50	2 : 0.50	

#score	55.78724984640003
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_UTR_m1_run1.txt

#BEAR
""fffffftttttttttttffffff3	chr17:46138079-46138308(+)$1	229	88	114	21.9299
dd[bb[bbuuuuuuuuuuuubb]bb]	chr2:96851446-96851692(-)$1	246	141	167	22.3886
[cccyyyyyyyyyyyyyyyyccc333	chr6:132212844-132213089(+)$1	245	85	111	21.3978
ccc!!cccuuuuuuuuuuuuccc22c	chr13:24249913-24250186(+)$1	273	199	225	24.3349
gggggggvvvvvvvvvvvvvgggggg	chrX:133930959-133931241(-)$1	282	117	143	24.6569
!bb[dddduuuuuuuuuuuudddd]b	chr3:145787473-145787686(-)$1	213	117	143	23.3734
gg!!ddddwwwwwwwwwwwwwwdddd	chr12:22840821-22841070(+)$1	249	80	106	22.6433
!a!!dddduuuuuuuuuuuudddd22	chr14:62214788-62215055(+)$1	267	93	119	23.8163
iggggggguuuuuuuuuuuugggggg	chr15:45010170-45010434(+)$1	264	68	94	25.1369
ffffffwwwwwwwwwwwwwwffffff	chr17:56168128-56168397(+)$1	269	27	53	21.9378
cc!!cccyyyyyyyyyyyyyyyyccc	chr2:85549631-85549884(-)$1	253	40	66	22.1304
eeeddddvvvvvvvvvvvvvdddd33	chr10:119042079-119042363(-)$1	284	165	191	23.0857
FFffffffuuuuuuuuuuuuffffff	chr7:94296428-94296714(+)$1	286	128	154	22.7033
gggg!!bbuuuuuuuuuuuubb22gg	chr19:42751651-42751901(-)$1	250	13	39	23.8343
eee[dddduuuuuuuuuuuudddd]e	chr6:35824855-35825129(-)$1	274	234	260	23.7439
gggggggvvvvvvvvvvvvvgggggg	chr3:49020778-49021028(+)$1	250	42	68	24.6569
!eeeeebbuuuuuuuuuuuubb]eee	chr3:172116925-172117168(+)$1	243	98	124	23.1782
iiiiiiiiuuuuuuuuuuuuiiiiii	chr12:106632201-106632460(-)$1	259	58	84	25.3940
cc!!ddddyyyyyyyyyyyyyyyydd	chr2:153505545-153505820(+)$1	275	105	131	21.1935
ffffffwwwwwwwwwwwwwwffffff	chr6:109688419-109688664(-)$1	245	25	51	21.9378
iiiiiiiiwwwwwwwwwwwwwwiiii	chr4:155506460-155506729(-)$1	269	234	260	23.9594
ccc[dddduuuuuuuuuuuuddddcc	chr6:132214771-132215018(+)$1	247	116	142	24.0277
ddd[ddddvvvvvvvvvvvvvdddd]	chr19:48886155-48886411(-)$1	256	183	209	23.2118
hhhhhhhhwwwwwwwwwwwwwwhhhh	chrX:152915868-152916163(+)$1	295	83	109	21.3304
iiiiiiiivvvvvvvvvvvvviiiii	chr11:102269186-102269398(-)$1	212	54	80	24.9706
:ggggggguuuuuuuuuuuugggggg	chr14:75599199-75599457(-)$1	258	118	144	24.1940
[ccc[ccctttttttttttccc]ccc	chr11:102267314-102267694(-)$1	380	34	60	23.0122
ggggg[avvvvvvvvvvvvvaggggg	chr8:22278994-22279199(+)$1	205	174	200	24.8104
=========ttttttttttt======	chr6:64291050-64291291(+)$1	241	176	202	23.7995
iiiiiiiiitttttttttttiiiiii	chr10:73575977-73576200(-)$1	223	61	87	23.3552
fff[cccvvvvvvvvvvvvvccc]ff	chr2:68405975-68406223(-)$1	248	135	161	23.9823
iiiiiiiiitttttttttttiiiiii	chr15:44063594-44063834(+)$1	240	4	30	23.3552
b"""cccvvvvvvvvvvvvvccc333	chr10:121336435-121336712(-)$1	277	30	56	23.9169
####dddduuuuuuuuuuuudddd22	chr10:70744605-70744851(+)$1	246	146	172	23.4497
iiiiiiiivvvvvvvvvvvvviiiii	chr11:102269198-102269433(-)$1	235	89	115	24.9706
e[ffffffuuuuuuuuuuuuffffff	chr1:150237737-150237962(-)$1	225	128	154	23.4533
igggggggwwwwwwwwwwwwwwgggg	chr7:26230844-26231110(-)$1	266	206	232	23.7257
iiiiiiiiwwwwwwwwwwwwwwiiii	chr4:155506431-155506648(-)$1	217	153	179	23.9594
ffffffwwwwwwwwwwwwwwffffff	chr7:97481377-97481637(-)$1	260	203	229	21.9378
ccc[dddduuuuuuuuuuuudddd]c	chr17:74731336-74731577(-)$1	241	194	220	24.1426
:eeeeewwwwwwwwwwwwwweeeeef	chr3:49570756-49571049(+)$1	293	185	211	21.0124
:gggggggtttttttttttggggggg	chr7:103112510-103112744(-)$1	234	82	108	22.3703
##ffffffyyyyyyyyyyyyyyyyff	chr12:92537654-92537907(-)$1	253	176	202	20.9290
ggggg[bbvvvvvvvvvvvvvbb]gg	chr3:149087389-149087636(-)$1	247	177	203	23.9079
eeeeyyyyyyyyyyyyyyyyeeeee]	chr7:2704226-2704472(+)$1	246	122	148	20.4285
hhhhhhhhyyyyyyyyyyyyyyyyhh	chr11:125490685-125490973(+)$1	288	72	98	20.1923
:ddddcccuuuuuuuuuuuuccc]dd	chr2:27422365-27422620(-)$1	255	25	51	22.7640
iiiiiiiiuuuuuuuuuuuuiiiiii	chr6:160102082-160102332(-)$1	250	74	100	25.3940
ggggg[bbwwwwwwwwwwwwwwbb]g	chr7:26230501-26230749(-)$1	248	79	105	22.7594
ccc[ddddvvvvvvvvvvvvvdddd]	chr3:145787423-145787641(-)$1	218	106	132	23.7559
========uuuuuuuuuuuu======	chr15:39889401-39889680(+)$1	279	145	171	25.6406
[ddddyyyyyyyyyyyyyyyydddd]	chr3:57557445-57557716(-)$1	271	106	132	21.0245
ccc[ddddyyyyyyyyyyyyyyyydd	chr2:135206717-135206982(+)$1	265	138	164	21.1828
::eeeeevvvvvvvvvvvvveeeeec	chr16:3777287-3777569(-)$1	282	16	42	21.1345
========wwwwwwwwwwwwww====	chr2:190647234-190647503(-)$1	269	29	55	24.1072
'gggggggtttttttttttggggggg	chr6:34256186-34256444(-)$1	258	58	84	22.6776
gggggggvvvvvvvvvvvvvgggggg	chr10:45471643-45471929(-)$1	286	45	71	24.6569
ffffffwwwwwwwwwwwwwwffffff	chr16:2652997-2653270(+)$1	273	57	83	21.9378
:gggggggtttttttttttggggggg	chr2:70316038-70316343(+)$1	305	151	177	22.3703
&&&eeeeeuuuuuuuuuuuueeeee4	chr17:70120564-70120817(+)$1	253	44	70	21.3545
iiiiiiiiwwwwwwwwwwwwwwiiii	chr14:39819628-39819905(+)$1	277	202	228	23.9594
ffffffwwwwwwwwwwwwwwffffff	chr19:39327048-39327341(-)$1	293	254	280	21.9378
eeeeddddvvvvvvvvvvvvvdddd]	chr8:22279180-22279426(+)$1	246	187	213	23.1646

#otherMatches

#Seq PSSM
UUAGAAUUUCUUGCGCUUUGAUUUUU	chr17:46138079-46138308(+)$1	229	88	114	21.9299
UCCGAUUGUAUAGAAAACACCAUUUU	chr2:96851446-96851692(-)$1	246	141	167	22.3886
ucuguauaugauauuuuuuucagccu	chr6:132212844-132213089(+)$1	245	85	111	21.3978
CAAUUUAGAUUUCAUCAUUACUAUUU	chr13:24249913-24250186(+)$1	273	199	225	24.3349
CGGGUUCCCCCAGACCAUUAGAACCC	chrX:133930959-133931241(-)$1	282	117	143	24.6569
UGUUGAGCCUUGCUUCUUCCGUUUUG	chr3:145787473-145787686(-)$1	213	117	143	23.3734
AUAAGACUUUUCUUUAUUUUUUAGUU	chr12:22840821-22841070(+)$1	249	80	106	22.6433
UGUACAAAUUUUUCAUUCCUUUUGCU	chr14:62214788-62215055(+)$1	267	93	119	23.8163
AUAUAAGAUUCAUAUUUACUUCUUAU	chr15:45010170-45010434(+)$1	264	68	94	25.1369
CAUGAGUCGCCUUCAAAACUCUCGUG	chr17:56168128-56168397(+)$1	269	27	53	21.9378
CCUCUGGAAAAAGAUGAACGUCACCA	chr2:85549631-85549884(-)$1	253	40	66	22.1304
CUGCAGCUUUAGUCUGUUAUGCUGAU	chr10:119042079-119042363(-)$1	284	165	191	23.0857
CUGCAGGAUUUGUGUCAUUUUCCUGC	chr7:94296428-94296714(+)$1	286	128	154	22.7033
GGGUGCCCUGAAACCAAACUGGAAGC	chr19:42751651-42751901(-)$1	250	13	39	23.8343
AGAGAGGUCCGAAUUCAAAAACCUGU	chr6:35824855-35825129(-)$1	274	234	260	23.7439
CUGAGAGACACUGGCAACACCUCUUA	chr3:49020778-49021028(+)$1	250	42	68	24.6569
UUAUGUACUAAUUUUCCCUUGUAGCA	chr3:172116925-172117168(+)$1	243	98	124	23.1782
AAGGAAAAUUAAUUUUACUUUUUUUU	chr12:106632201-106632460(-)$1	259	58	84	25.3940
GCUGAAGUUCCUAUUUUAUGUUGUGC	chr2:153505545-153505820(+)$1	275	105	131	21.1935
CUAGGUCAUUAACGUUUUUUAUUUAG	chr6:109688419-109688664(-)$1	245	25	51	21.9378
ucuguauucccaaaugccuaacagua	chr4:155506460-155506729(-)$1	269	234	260	23.9594
CUCCUUUCUUUUCUUUUCUUGAAAGA	chr6:132214771-132215018(+)$1	247	116	142	24.0277
GGGCAGGGUCCAAGAUCUUUUCCCUU	chr19:48886155-48886411(-)$1	256	183	209	23.2118
UUCUGCGACUGUUACUUUUUCUUUGC	chrX:152915868-152916163(+)$1	295	83	109	21.3304
CCUAUCUUUUUUUUUUUGGCUGGGGU	chr11:102269186-102269398(-)$1	212	54	80	24.9706
CUUGUGUCUUCCUCUCCUGUGGCAUA	chr14:75599199-75599457(-)$1	258	118	144	24.1940
AGUCAGUCAGAACUUCGUAGACCGAC	chr11:102267314-102267694(-)$1	380	34	60	23.0122
UGAAGACUCUGGAAGAUUUUGCUUUA	chr8:22278994-22279199(+)$1	205	174	200	24.8104
CAUAUAUUUAUACUGUCUGGGGAUGU	chr6:64291050-64291291(+)$1	241	176	202	23.7995
CAUGAAGUUGCUAUUAAAUGGACUUC	chr10:73575977-73576200(-)$1	223	61	87	23.3552
UGUUGAAUGUUUAGUUUUUCUUCUGC	chr2:68405975-68406223(-)$1	248	135	161	23.9823
CCAGGACCAGUUUAUGUUUGUGGUUU	chr15:44063594-44063834(+)$1	240	4	30	23.3552
UGUUUCGGUGAACGGUACUACGAUUG	chr10:121336435-121336712(-)$1	277	30	56	23.9169
AAAUGUUUUUACUAUAAAAUGAGCUA	chr10:70744605-70744851(+)$1	246	146	172	23.4497
CCUAUCUUUUUUUUUUUGGCUGGGGU	chr11:102269198-102269433(-)$1	235	89	115	24.9706
GUGAUUUUGACUAAUAAAAAAGAAUU	chr1:150237737-150237962(-)$1	225	128	154	23.4533
AGAGAAUAAUUUUUAUAAACCCUGUU	chr7:26230844-26231110(-)$1	266	206	232	23.7257
ucuguauucccaaaugccuaacagua	chr4:155506431-155506648(-)$1	217	153	179	23.9594
GCUGUAGUCAUUUAUGUUCAUGCAGU	chr7:97481377-97481637(-)$1	260	203	229	21.9378
AUUGGGCCUUUUAAAAACAUGGCUGG	chr17:74731336-74731577(-)$1	241	194	220	24.1426
AGCGAGGAACCAUGAAUGAACUCGCA	chr3:49570756-49571049(+)$1	293	185	211	21.0124
UAAUAUACUCCUUAAAAAUGUAUGUU	chr7:103112510-103112744(-)$1	234	82	108	22.3703
GAUAGAAUGGuaaaaaaaaaaaaaau	chr12:92537654-92537907(-)$1	253	176	202	20.9290
UAUUUGUUUUUGUUUUUUUUUAAGGA	chr3:149087389-149087636(-)$1	247	177	203	23.9079
UGGCAAAUACUAAAAAUCUCGUCAAU	chr7:2704226-2704472(+)$1	246	122	148	20.4285
GUUGAAGAuuuuuuuuuuuuuuuuuu	chr11:125490685-125490973(+)$1	288	72	98	20.1923
UGGAGCAGCCAUCUAUCUACCUGACU	chr2:27422365-27422620(-)$1	255	25	51	22.7640
gugaaggaaacucaagauucuccuuu	chr6:160102082-160102332(-)$1	250	74	100	25.3940
CCAAGUGAUCAUUAAUAAAGCUUUUC	chr7:26230501-26230749(-)$1	248	79	105	22.7594
CUCGCUCCUUAUUCUUUUUUUGGGGG	chr3:145787423-145787641(-)$1	218	106	132	23.7559
GGAAUGUGCUUUUUUUUGUACACAUU	chr15:39889401-39889680(+)$1	279	145	171	25.6406
UUAUCCCCUUGCUACUUUACUGAUAC	chr3:57557445-57557716(-)$1	271	106	132	21.0245
GAUCACAGGCUUCUUUUAUUUCCACU	chr2:135206717-135206982(+)$1	265	138	164	21.1828
AAACCAGUUGAUUUAAAUAUCUGGUC	chr16:3777287-3777569(-)$1	282	16	42	21.1345
UAGCAUAUUUUGGAUGGUGUUUGUGU	chr2:190647234-190647503(-)$1	269	29	55	24.1072
AUGUUGCUGUUUGGUGUUAAGUGAUG	chr6:34256186-34256444(-)$1	258	58	84	22.6776
GGGCAGGUCUCUGCCACCUCCUUGCU	chr10:45471643-45471929(-)$1	286	45	71	24.6569
GAUUUAAUCAUAUAAUUUAAUGAAUC	chr16:2652997-2653270(+)$1	273	57	83	21.9378
UUAUUUCUGUUUGUCGAUAAGAAAUG	chr2:70316038-70316343(+)$1	305	151	177	22.3703
UUUGGACAUUUGUGuuuuuuuguuuu	chr17:70120564-70120817(+)$1	253	44	70	21.3545
AAUAAAUUAUAGUUGAUUUAAAGAUU	chr14:39819628-39819905(+)$1	277	202	228	23.9594
UGUGCUGCCCAUGUACUCUUGGCACA	chr19:39327048-39327341(-)$1	293	254	280	21.9378
UAGGGUGUUUUCCCUUUUUGUGCACA	chr8:22279180-22279426(+)$1	246	187	213	23.1646

#DB
..((((((...........)))))).	chr17:46138079-46138308(+)$1	1	88	114	21.9299
((.((.((............)).)).	chr2:96851446-96851692(-)$1	1	141	167	22.3886
.(((................)))...	chr6:132212844-132213089(+)$1	1	85	111	21.3978
(((..(((............)))..)	chr13:24249913-24250186(+)$1	1	199	225	24.3349
(((((((.............))))))	chrX:133930959-133931241(-)$1	1	117	143	24.6569
.((.((((............)))).)	chr3:145787473-145787686(-)$1	1	117	143	23.3734
((..((((..............))))	chr12:22840821-22841070(+)$1	1	80	106	22.6433
.(..((((............))))..	chr14:62214788-62215055(+)$1	1	93	119	23.8163
((((((((............))))))	chr15:45010170-45010434(+)$1	1	68	94	25.1369
((((((..............))))))	chr17:56168128-56168397(+)$1	1	27	53	21.9378
((..(((................)))	chr2:85549631-85549884(-)$1	1	40	66	22.1304
(((((((.............))))..	chr10:119042079-119042363(-)$1	1	165	191	23.0857
((((((((............))))))	chr7:94296428-94296714(+)$1	1	128	154	22.7033
((((..((............))..))	chr19:42751651-42751901(-)$1	1	13	39	23.8343
(((.((((............)))).)	chr6:35824855-35825129(-)$1	1	234	260	23.7439
(((((((.............))))))	chr3:49020778-49021028(+)$1	1	42	68	24.6569
.(((((((............)).)))	chr3:172116925-172117168(+)$1	1	98	124	23.1782
((((((((............))))))	chr12:106632201-106632460(-)$1	1	58	84	25.3940
((..((((................))	chr2:153505545-153505820(+)$1	1	105	131	21.1935
((((((..............))))))	chr6:109688419-109688664(-)$1	1	25	51	21.9378
((((((((..............))))	chr4:155506460-155506729(-)$1	1	234	260	23.9594
(((.((((............))))))	chr6:132214771-132215018(+)$1	1	116	142	24.0277
(((.((((.............)))).	chr19:48886155-48886411(-)$1	1	183	209	23.2118
((((((((..............))))	chrX:152915868-152916163(+)$1	1	83	109	21.3304
((((((((.............)))))	chr11:102269186-102269398(-)$1	1	54	80	24.9706
.(((((((............))))))	chr14:75599199-75599457(-)$1	1	118	144	24.1940
.(((.(((...........))).)))	chr11:102267314-102267694(-)$1	1	34	60	23.0122
(((((.(.............))))))	chr8:22278994-22279199(+)$1	1	174	200	24.8104
(((((((((...........))))))	chr6:64291050-64291291(+)$1	1	176	202	23.7995
(((((((((...........))))))	chr10:73575977-73576200(-)$1	1	61	87	23.3552
(((.(((.............))).))	chr2:68405975-68406223(-)$1	1	135	161	23.9823
(((((((((...........))))))	chr15:44063594-44063834(+)$1	1	4	30	23.3552
(...(((.............)))...	chr10:121336435-121336712(-)$1	1	30	56	23.9169
....((((............))))..	chr10:70744605-70744851(+)$1	1	146	172	23.4497
((((((((.............)))))	chr11:102269198-102269433(-)$1	1	89	115	24.9706
(.((((((............))))))	chr1:150237737-150237962(-)$1	1	128	154	23.4533
)(((((((..............))))	chr7:26230844-26231110(-)$1	1	206	232	23.7257
((((((((..............))))	chr4:155506431-155506648(-)$1	1	153	179	23.9594
((((((..............))))))	chr7:97481377-97481637(-)$1	1	203	229	21.9378
(((.((((............)))).)	chr17:74731336-74731577(-)$1	1	194	220	24.1426
.(((((..............)))))(	chr3:49570756-49571049(+)$1	1	185	211	21.0124
.(((((((...........)))))))	chr7:103112510-103112744(-)$1	1	82	108	22.3703
..((((((................))	chr12:92537654-92537907(-)$1	1	176	202	20.9290
(((((.((.............)).))	chr3:149087389-149087636(-)$1	1	177	203	23.9079
((((................))))).	chr7:2704226-2704472(+)$1	1	122	148	20.4285
((((((((................))	chr11:125490685-125490973(+)$1	1	72	98	20.1923
.(((((((............))).))	chr2:27422365-27422620(-)$1	1	25	51	22.7640
((((((((............))))))	chr6:160102082-160102332(-)$1	1	74	100	25.3940
(((((.((..............)).)	chr7:26230501-26230749(-)$1	1	79	105	22.7594
(((.((((.............)))).	chr3:145787423-145787641(-)$1	1	106	132	23.7559
((((((((............))))))	chr15:39889401-39889680(+)$1	1	145	171	25.6406
.((((................)))).	chr3:57557445-57557716(-)$1	1	106	132	21.0245
(((.((((................))	chr2:135206717-135206982(+)$1	1	138	164	21.1828
..(((((.............)))))(	chr16:3777287-3777569(-)$1	1	16	42	21.1345
((((((((..............))))	chr2:190647234-190647503(-)$1	1	29	55	24.1072
.(((((((...........)))))))	chr6:34256186-34256444(-)$1	1	58	84	22.6776
(((((((.............))))))	chr10:45471643-45471929(-)$1	1	45	71	24.6569
((((((..............))))))	chr16:2652997-2653270(+)$1	1	57	83	21.9378
.(((((((...........)))))))	chr2:70316038-70316343(+)$1	1	151	177	22.3703
...(((((............))))).	chr17:70120564-70120817(+)$1	1	44	70	21.3545
((((((((..............))))	chr14:39819628-39819905(+)$1	1	202	228	23.9594
((((((..............))))))	chr19:39327048-39327341(-)$1	1	254	280	21.9378
((((((((.............)))).	chr8:22279180-22279426(+)$1	1	187	213	23.1646

#PSSM
i : 0.17	g : 0.12	c : 0.11	f : 0.09	: : 0.09	e : 0.07	[ : 0.04	! : 0.04	= : 0.04	d : 0.03	h : 0.03	# : 0.03	" : 0.01	F : 0.01	b : 0.01	' : 0.01	& : 0.01	
g : 0.22	c : 0.14	i : 0.14	f : 0.09	e : 0.09	d : 0.06	= : 0.04	" : 0.03	h : 0.03	# : 0.03	b : 0.01	a : 0.01	F : 0.01	[ : 0.01	: : 0.01	& : 0.01	
g : 0.20	f : 0.15	i : 0.14	c : 0.11	e : 0.11	! : 0.06	d : 0.04	= : 0.04	h : 0.03	[ : 0.01	b : 0.01	" : 0.01	# : 0.01	& : 0.01	
g : 0.20	f : 0.14	i : 0.14	[ : 0.12	e : 0.09	! : 0.07	d : 0.04	= : 0.04	c : 0.03	h : 0.03	b : 0.01	" : 0.01	# : 0.01	
d : 0.23	g : 0.19	f : 0.14	i : 0.14	e : 0.06	c : 0.04	= : 0.04	y : 0.03	! : 0.03	h : 0.03	b : 0.01	[ : 0.01	
d : 0.20	f : 0.14	g : 0.14	i : 0.14	c : 0.09	[ : 0.06	e : 0.06	y : 0.04	= : 0.04	h : 0.03	! : 0.01	
d : 0.20	g : 0.14	i : 0.14	c : 0.09	w : 0.09	b : 0.07	f : 0.06	y : 0.04	= : 0.04	h : 0.03	e : 0.03	a : 0.01	
d : 0.19	i : 0.14	v : 0.12	g : 0.09	w : 0.09	b : 0.07	f : 0.06	y : 0.06	c : 0.04	= : 0.04	h : 0.03	e : 0.01	
u : 0.30	v : 0.22	w : 0.22	y : 0.12	t : 0.07	i : 0.03	= : 0.01	
u : 0.30	v : 0.22	w : 0.22	t : 0.12	y : 0.12	
u : 0.30	v : 0.22	w : 0.22	t : 0.12	y : 0.12	
u : 0.30	v : 0.22	w : 0.22	t : 0.12	y : 0.12	
u : 0.30	v : 0.22	w : 0.22	t : 0.12	y : 0.12	
u : 0.30	v : 0.22	w : 0.22	t : 0.12	y : 0.12	
u : 0.30	v : 0.22	w : 0.22	t : 0.12	y : 0.12	
u : 0.30	v : 0.22	w : 0.22	t : 0.12	y : 0.12	
u : 0.30	v : 0.22	w : 0.22	t : 0.12	y : 0.12	
u : 0.30	v : 0.22	w : 0.22	t : 0.12	y : 0.12	
u : 0.30	v : 0.22	w : 0.22	t : 0.12	y : 0.12	
u : 0.30	v : 0.22	w : 0.22	y : 0.12	t : 0.04	g : 0.04	f : 0.01	c : 0.01	
f : 0.12	g : 0.12	w : 0.12	d : 0.11	c : 0.09	y : 0.09	v : 0.09	i : 0.06	e : 0.06	b : 0.04	= : 0.03	a : 0.01	
d : 0.17	g : 0.14	f : 0.12	w : 0.12	c : 0.09	i : 0.09	y : 0.07	b : 0.06	e : 0.06	= : 0.03	
d : 0.19	g : 0.15	i : 0.14	f : 0.12	c : 0.07	y : 0.07	e : 0.06	] : 0.04	= : 0.04	b : 0.03	2 : 0.01	h : 0.01	
d : 0.19	g : 0.15	i : 0.14	f : 0.12	e : 0.07	y : 0.06	= : 0.04	] : 0.04	b : 0.03	3 : 0.03	2 : 0.03	c : 0.03	h : 0.01	
g : 0.19	f : 0.15	i : 0.14	d : 0.12	e : 0.07	] : 0.06	3 : 0.04	2 : 0.04	c : 0.04	= : 0.04	h : 0.03	b : 0.01	
g : 0.20	f : 0.15	i : 0.14	] : 0.09	c : 0.09	3 : 0.06	d : 0.06	= : 0.04	2 : 0.03	e : 0.03	h : 0.03	b : 0.01	4 : 0.01	

#score	1455.7034656125759
#seq	63
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_CDS_m1_run2.txt

#BEAR
ccc!!ccc!!dddd"""bboooooobb22dddd22ccc]c	chr16:2215740-2215965(+)$1	225	99	139	12.4791
+++++ccc####a[bb[cccooooooccc]bba333ccc>	chr1:156845356-156845619(+)$1	263	154	194	11.3413
iiiiiii####ddddbb[cccooooooccc]bb]ddddii	chr17:17942662-17942935(+)$1	273	145	185	13.2096
"""bb[bb!!ddddcccddddllldddd]ccc333ddddb	chr19:11664437-11664688(-)$1	251	27	67	11.9464
iiiiiiii!!ccc####ddddoooooodddd333ccc>>>	chr22:24439200-24439492(+)$1	292	216	256	15.3859
dd[===========dddd[ccclllccc]dddd>>>>>>>	chr15:89442901-89443143(-)$1	242	164	204	12.7967
eeee[bb"""ccc!!ffffffmmmmffffff22cccbb]e	chr1:987290-987531(+)$1	241	55	95	12.1956
ddddddd!!ccc[dddd[cccmmmmccc]dddd]ccc444	chr21:47734477-47734738(-)$1	261	1	41	14.4916
fff!!ccc[ccc!!ccc[ccclllcccccc]ccc]ccc]f	chr7:1478502-1478766(-)$1	264	73	113	14.8473
ggggg[ccc!!eeeeeddddmmmmdddd]eeeee]ccc]g	chr10:49659533-49659763(-)$1	230	61	101	11.9205
b[ccc[ccc[ccc[eeeee[ammmma]eeeeeccc]cccc	chr20:60911863-60912149(-)$1	286	120	160	13.0386
eeggggggg[abb[cccddddmmmmdddd]ccc]bb5555	chr17:76117552-76117844(-)$1	292	81	121	11.7865
hh"""bb!!ccc[bbffffffmmmmffffff]bb]ccc]b	chr14:91686685-91686950(+)$1	265	215	255	11.5318
iiiiiiiia[ccc[bb"""ddddmmmmdddd4444bb22c	chr4:946116-946380(+)$1	264	7	47	12.2657
ffff[ccc####ccc!!ccclllccc22ccc333ccc333	chr16:75270555-75270830(-)$1	275	49	89	13.0140
ddd[ccc"""ccc[ffffffaooooooa]ffffffccc55	chr19:7705417-7705732(+)$1	315	253	293	11.7973
eeee!!dddd!!ddddddddammmma]dddd]dddd22dd	chr6:33231022-33231372(-)$1	350	123	163	11.8072
f[ccc[ffffff"""bb[cccmmmmccc333bb22fffff	chr1:228329284-228329554(+)$1	270	80	120	13.1717
!!cccccc!!dddd"""ddddmmmmdddd]dddd22ccc]	chr19:17397398-17397665(+)$1	267	25	65	14.5798
!!cccccc!!dddd"""ddddmmmmdddd]dddd22ccc]	chr19:17397259-17397507(+)$1	248	164	204	14.5798
============####eeeeemmmmeeeee>>>>>>>>>>	chr20:62364323-62364719(+)$1	396	73	113	12.9914
FFggggggg!!cccccc[cccmmmmcccccc]cccggggg	chr11:47376992-47377220(-)$1	228	31	71	14.4295
eeggggggg[abb[cccddddmmmmdddd]ccc]bb5555	chr17:76117681-76117952(-)$1	271	189	229	11.7865
dddd!!ggggggg[bb!!cccnnnnnccc333bbgggggg	chr19:16986688-16986982(+)$1	294	134	174	12.8029
eeeeggggggg[eeeee[cccmmmmccceeeeeggggggg	chr12:6692415-6692648(-)$1	233	39	79	12.7493
dddd[ccc!!ccc[ccc[cccmmmmcccccc]cccccc]d	chr3:13415244-13415497(-)$1	253	137	177	16.6178
==================oooooo================	chr17:80141704-80141986(-)$1	282	54	94	12.9079
eee[a!!dddd"""bb!!cccmmmmccc22bb]dddd22a	chr11:47380306-47380572(-)$1	266	56	96	13.3003
[bbdddd"""ccc[ccc[bbmmmmbb]ccc22ccc22ddd	chr7:1479449-1479728(-)$1	279	92	132	11.5680
hhhhhhh[bb[ccc####cccmmmmcccccc]bb]hhhhh	chr11:637261-637528(+)$1	267	93	133	12.3972
dd!!dddd[dddd[ccc[ddddlllddddccc]ddddddd	chrX:47430493-47430835(+)$1	342	164	204	11.8732
[dddd####dddd[ccc!!ccclllccc333ccc]ddddd	chr19:47774827-47775044(+)$1	217	7	47	13.3110
d!!a!!ggggggg[bb[bbbbmmmmbb]bb]bbggggggg	chr9:67793822-67794075(-)$1	253	141	181	11.6465
gggg[eeeee####bb!!ddddmmmmdddd22bb4444ee	chr1:101487177-101487581(-)$1	404	67	107	12.0940
ddd:dddd[ffffff"""cccmmmmccc333ffffff22d	chr19:50163992-50164304(-)$1	312	245	285	11.9749

#otherMatches

#Seq PSSM
GUCCCGGAAUGAGGCCAGGUCUCCUCCGUCCUCCCUCUAG	chr16:2215740-2215965(+)$1	225	99	139	12.4791
guguguguguguguguguAGAAGCCCCUAGGCCUGAACGA	chr1:156845356-156845619(+)$1	263	154	194	11.3413
GACCCAGCUCAGGACUGGGAGGCCCUGCUCGCAGGUCCCU	chr17:17942662-17942935(+)$1	273	145	185	13.2096
CAAUGCCAAUGAUCGCCCUUGACCUAAGUGGCCCAGAUCU	chr19:11664437-11664688(-)$1	251	27	67	11.9464
GUGGCCCUGAGGCUCAUCCGGAUCCCCCUGGCUCGCCAUG	chr22:24439200-24439492(+)$1	292	216	256	15.3859
UCUGUCCAGUUUGUGGCAUCCUACAAGGUUGCCUACAGUA	chr15:89442901-89443143(-)$1	242	164	204	12.7967
CUCACUGUCUGUCUCUUUGUUUCCAAGCGAACUGGCCAAU	chr1:987290-987531(+)$1	241	55	95	12.1956
GGAGCCCUCGGGUCAGCCCUGCCCCCAGAGCUGCCCCCCA	chr21:47734477-47734738(-)$1	261	1	41	14.4916
AGACCCCAGGCUCCCAGUGGCCCUGCUCUGAAGCGUGGCU	chr7:1478502-1478766(-)$1	264	73	113	14.8473
GGGUGGGCGGGGUGCAUUGUGUGUGCAAUUGUAUGUGUGU	chr10:49659533-49659763(-)$1	230	61	101	11.9205
GGAUGGCACGUCCGUUGCUGCGGAGGGAGCAGGGAGGUGC	chr20:60911863-60912149(-)$1	286	120	160	13.0386
CAGCCCCAGGAGCGUGUGCGGGAGGCUGCGGCAGGCGGCU	chr17:76117552-76117844(-)$1	292	81	121	11.7865
GAGCUGGGGCCUCCAGAUGCCAUGUGGCGUCAUGUGGGAC	chr14:91686685-91686950(+)$1	265	215	255	11.5318
GGGGGGUUUGGUUUUGUUUUUGUUUUAACAGUUUUCGUUA	chr4:946116-946380(+)$1	264	7	47	12.2657
CAGUGAGCAAAUGCCAGGGCAAUGCCAGGGCCAGGCUGAG	chr16:75270555-75270830(-)$1	275	49	89	13.0140
GCGGCCCAUAUCUUCUUCACCGACAGUGAGUGAGGAGAGC	chr19:7705417-7705732(+)$1	315	253	293	11.7973
GGGAAAAGGGAAGAGACAGCCUUCUGUGCUGUUUUCAGcu	chr6:33231022-33231372(-)$1	350	123	163	11.8072
CCGCCACAGCAGGGAGUGCCUUUCCAGGAAAGCGGCUGCU	chr1:228329284-228329554(+)$1	270	80	120	13.1717
UGACAGCAGCCCCCAUCUCUGGUUUCAGAAGGGgugugug	chr19:17397398-17397665(+)$1	267	25	65	14.5798
UGACAGCAGCCCCCAUCUCUGGUUUCAGAAGGGgugugug	chr19:17397259-17397507(+)$1	248	164	204	14.5798
uguaugugugcguguguaugugugugcgugagugugugag	chr20:62364323-62364719(+)$1	396	73	113	12.9914
CCCGUCCCCGGGCCCCUGUGCGUACGCAAGGCGGUGGGGG	chr11:47376992-47377220(-)$1	228	31	71	14.4295
CAGCCCCAGGAGCGUGUGCGGGAGGCUGCGGCAGGCGGCU	chr17:76117681-76117952(-)$1	271	189	229	11.7865
GCAGGAGGCGGGGUGGCCGCACCACCUGCUUUCCUCCCGC	chr19:16986688-16986982(+)$1	294	134	174	12.8029
GGACCAGGGGUAGCUGGUGGUGCUGACUUCAGCACUCCUG	chr12:6692415-6692648(-)$1	233	39	79	12.7493
GUGGGAACUUCAGCUGGUCUUCGUCAAGCCACCUGGUUGC	chr3:13415244-13415497(-)$1	253	137	177	16.6178
gugugugugugugugugugugugugCGCGCGCGCGCGCGC	chr17:80141704-80141986(-)$1	282	54	94	12.9079
GUCCCCAGCCCAGCCCAGCUCAGAUGAGGAGGAGGGCGAG	chr11:47380306-47380572(-)$1	266	56	96	13.3003
AGUGUCCACAUCACCCUGACCCCCGUGAGGCCUGACAGGA	chr7:1479449-1479728(-)$1	279	92	132	11.5680
gccggccgcgggggcaucugcgggggcaucugcggggCUG	chr11:637261-637528(+)$1	267	93	133	12.3972
GGCUGGGGCUGUUGGGAUGCCCACAGGGCUCUGGACACCC	chrX:47430493-47430835(+)$1	342	164	204	11.8732
UGUCCGAUUGGGGUGAAGAGGUGGAGCUGAAUUCUCCCCG	chr19:47774827-47775044(+)$1	217	7	47	13.3110
aucccagccucaggccugcccggacgguguugguuggggu	chr9:67793822-67794075(-)$1	253	141	181	11.6465
UAAUUGCAACAUGACAUAAAGUACUGGCUUACUGAUGAGU	chr1:101487177-101487581(-)$1	404	67	107	12.0940
GGACGCUCACCACGCUAUGCCCUCUGGUUCUGUGUGGGGG	chr19:50163992-50164304(-)$1	312	245	285	11.9749

#DB
(((..(((..((((...((......))..))))..))).)	chr16:2215740-2215965(+)$1	1	99	139	12.4791
.....(((....(.((.(((......))).)))...))).	chr1:156845356-156845619(+)$1	1	154	194	11.3413
(((((((....((((((.(((......))).)).))))))	chr17:17942662-17942935(+)$1	1	145	185	13.2096
...((.((..(((((((((((...)))).)))...)))))	chr19:11664437-11664688(-)$1	1	27	67	11.9464
((((((((..(((....((((......))))...)))...	chr22:24439200-24439492(+)$1	1	216	256	15.3859
((.(((((((((((((((.(((...))).)))).......	chr15:89442901-89443143(-)$1	1	164	204	12.7967
((((.((...(((..((((((....))))))..))))).)	chr1:987290-987531(+)$1	1	55	95	12.1956
(((((((..(((.((((.(((....))).)))).)))...	chr21:47734477-47734738(-)$1	1	1	41	14.4916
(((..(((.(((..(((.(((...)))))).))).))).)	chr7:1478502-1478766(-)$1	1	73	113	14.8473
(((((.(((..(((((((((....)))).))))).))).)	chr10:49659533-49659763(-)$1	1	61	101	11.9205
(.(((.(((.(((.(((((.(....).)))))))).))))	chr20:60911863-60912149(-)$1	1	120	160	13.0386
(((((((((.(((.(((((((....)))).))).))....	chr17:76117552-76117844(-)$1	1	81	121	11.7865
((...((..(((.((((((((....)))))).)).))).)	chr14:91686685-91686950(+)$1	1	215	255	11.5318
(((((((((.(((.((...((((....))))....))..)	chr4:946116-946380(+)$1	1	7	47	12.2657
((((.(((....(((..(((...)))..)))...)))...	chr16:75270555-75270830(-)$1	1	49	89	13.0140
(((.(((...(((.(((((((......).)))))))))..	chr19:7705417-7705732(+)$1	1	253	293	11.7973
((((..((((..(((((((((....).)))).))))..))	chr6:33231022-33231372(-)$1	1	123	163	11.8072
(.(((.((((((...((.(((....)))...))..)))))	chr1:228329284-228329554(+)$1	1	80	120	13.1717
..((((((..((((...((((....)))).))))..))).	chr19:17397398-17397665(+)$1	1	25	65	14.5798
..((((((..((((...((((....)))).))))..))).	chr19:17397259-17397507(+)$1	1	164	204	14.5798
((((((((((((....(((((....)))))..........	chr20:62364323-62364719(+)$1	1	73	113	12.9914
(((((((((..((((((.(((....)))))).))))))))	chr11:47376992-47377220(-)$1	1	31	71	14.4295
(((((((((.(((.(((((((....)))).))).))....	chr17:76117681-76117952(-)$1	1	189	229	11.7865
((((..(((((((.((..(((.....)))...))))))))	chr19:16986688-16986982(+)$1	1	134	174	12.8029
(((((((((((.(((((.(((....)))))))))))))))	chr12:6692415-6692648(-)$1	1	39	79	12.7493
((((.(((..(((.(((.(((....)))))).)))))).)	chr3:13415244-13415497(-)$1	1	137	177	16.6178
((((((((((((((((((......))))))))))))))))	chr17:80141704-80141986(-)$1	1	54	94	12.9079
(((.(..((((...((..(((....)))..)).))))..)	chr11:47380306-47380572(-)$1	1	56	96	13.3003
.((((((...(((.(((.((....)).)))..)))..)))	chr7:1479449-1479728(-)$1	1	92	132	11.5680
(((((((.((.(((....(((....)))))).)).)))))	chr11:637261-637528(+)$1	1	93	133	12.3972
((..((((.((((.(((.((((...))))))).)))))))	chrX:47430493-47430835(+)$1	1	164	204	11.8732
.((((....((((.(((..(((...)))...))).)))))	chr19:47774827-47775044(+)$1	1	7	47	13.3110
(..(..(((((((.((.((((....)).)).)))))))))	chr9:67793822-67794075(-)$1	1	141	181	11.6465
((((.(((((....((..((((....))))..))....))	chr1:101487177-101487581(-)$1	1	67	107	12.0940
))).((((.((((((...(((....)))...))))))..)	chr19:50163992-50164304(-)$1	1	245	285	11.9749

#PSSM
d : 0.22	e : 0.17	i : 0.08	f : 0.08	g : 0.05	h : 0.05	! : 0.05	= : 0.05	[ : 0.05	c : 0.02	+ : 0.02	" : 0.02	b : 0.02	F : 0.02	
d : 0.22	e : 0.17	i : 0.08	! : 0.08	f : 0.05	g : 0.05	[ : 0.05	h : 0.05	= : 0.05	c : 0.02	+ : 0.02	" : 0.02	F : 0.02	b : 0.02	
d : 0.17	c : 0.14	g : 0.14	e : 0.11	i : 0.08	" : 0.05	f : 0.05	= : 0.05	! : 0.05	+ : 0.02	[ : 0.02	b : 0.02	h : 0.02	
d : 0.14	g : 0.14	c : 0.11	! : 0.08	i : 0.08	= : 0.08	e : 0.08	[ : 0.05	+ : 0.02	b : 0.02	" : 0.02	f : 0.02	h : 0.02	a : 0.02	: : 0.02	
! : 0.14	d : 0.14	g : 0.14	c : 0.14	[ : 0.11	i : 0.08	= : 0.08	+ : 0.02	b : 0.02	" : 0.02	a : 0.02	h : 0.02	
c : 0.22	[ : 0.11	d : 0.11	g : 0.11	! : 0.11	i : 0.08	= : 0.08	b : 0.05	h : 0.02	# : 0.02	e : 0.02	
c : 0.28	g : 0.17	d : 0.14	i : 0.08	b : 0.08	= : 0.08	f : 0.02	! : 0.02	h : 0.02	# : 0.02	e : 0.02	
c : 0.25	g : 0.17	d : 0.11	= : 0.08	" : 0.08	# : 0.05	i : 0.05	! : 0.05	b : 0.02	f : 0.02	[ : 0.02	e : 0.02	
! : 0.22	g : 0.17	# : 0.11	= : 0.08	" : 0.08	[ : 0.08	c : 0.05	d : 0.05	a : 0.02	f : 0.02	b : 0.02	e : 0.02	
! : 0.22	[ : 0.11	d : 0.11	# : 0.08	= : 0.08	" : 0.08	c : 0.08	g : 0.08	f : 0.05	b : 0.02	e : 0.02	
c : 0.28	d : 0.20	# : 0.11	= : 0.08	! : 0.08	g : 0.08	a : 0.05	f : 0.05	[ : 0.02	
c : 0.34	d : 0.20	# : 0.08	= : 0.08	b : 0.05	f : 0.05	g : 0.05	e : 0.02	! : 0.02	[ : 0.02	" : 0.02	
c : 0.28	d : 0.22	= : 0.05	[ : 0.05	e : 0.05	b : 0.05	" : 0.05	# : 0.05	g : 0.05	a : 0.02	! : 0.02	f : 0.02	
[ : 0.34	d : 0.20	# : 0.08	c : 0.08	= : 0.05	! : 0.05	e : 0.05	" : 0.05	b : 0.02	f : 0.02	
c : 0.28	b : 0.20	" : 0.11	d : 0.11	# : 0.08	e : 0.08	f : 0.05	! : 0.02	= : 0.02	
c : 0.25	b : 0.22	" : 0.11	# : 0.08	d : 0.08	f : 0.08	e : 0.08	! : 0.02	= : 0.02	
c : 0.25	" : 0.14	d : 0.11	! : 0.11	f : 0.08	e : 0.08	[ : 0.05	b : 0.05	# : 0.05	= : 0.02	
[ : 0.25	d : 0.25	! : 0.11	f : 0.08	b : 0.05	c : 0.05	e : 0.05	" : 0.05	= : 0.02	# : 0.02	
c : 0.37	d : 0.28	b : 0.08	f : 0.08	e : 0.05	[ : 0.02	" : 0.02	o : 0.02	! : 0.02	
c : 0.42	d : 0.31	f : 0.08	o : 0.05	b : 0.05	[ : 0.02	e : 0.02	
c : 0.37	d : 0.25	o : 0.08	a : 0.08	f : 0.05	m : 0.05	l : 0.02	e : 0.02	b : 0.02	
m : 0.57	o : 0.17	l : 0.08	d : 0.08	c : 0.05	n : 0.02	
m : 0.60	o : 0.17	l : 0.17	d : 0.02	n : 0.02	
m : 0.62	o : 0.17	l : 0.14	c : 0.02	n : 0.02	
m : 0.57	o : 0.14	l : 0.08	d : 0.05	c : 0.05	n : 0.02	= : 0.02	b : 0.02	
c : 0.34	d : 0.20	o : 0.11	b : 0.08	f : 0.05	a : 0.05	m : 0.05	e : 0.02	n : 0.02	= : 0.02	
c : 0.37	d : 0.22	o : 0.08	] : 0.08	b : 0.05	f : 0.05	m : 0.02	2 : 0.02	e : 0.02	= : 0.02	
c : 0.42	d : 0.31	2 : 0.05	f : 0.05	e : 0.05	a : 0.02	= : 0.02	] : 0.02	
c : 0.25	d : 0.25	] : 0.14	e : 0.08	3 : 0.08	2 : 0.05	f : 0.05	= : 0.02	b : 0.02	
c : 0.25	d : 0.20	] : 0.14	e : 0.11	3 : 0.11	f : 0.08	= : 0.02	2 : 0.02	b : 0.02	
d : 0.22	c : 0.22	3 : 0.11	] : 0.08	f : 0.08	e : 0.08	b : 0.05	2 : 0.05	> : 0.02	= : 0.02	
c : 0.17	d : 0.14	b : 0.14	] : 0.14	3 : 0.08	2 : 0.08	e : 0.08	f : 0.05	4 : 0.02	> : 0.02	= : 0.02	
c : 0.22	b : 0.20	d : 0.17	3 : 0.08	e : 0.05	f : 0.05	] : 0.05	a : 0.02	2 : 0.02	4 : 0.02	> : 0.02	= : 0.02	
c : 0.20	d : 0.14	3 : 0.11	] : 0.11	b : 0.11	2 : 0.05	> : 0.05	f : 0.05	g : 0.05	e : 0.02	4 : 0.02	= : 0.02	
c : 0.22	] : 0.14	2 : 0.11	d : 0.11	g : 0.08	3 : 0.05	> : 0.05	b : 0.05	4 : 0.05	f : 0.05	= : 0.02	
c : 0.28	d : 0.17	g : 0.11	b : 0.08	2 : 0.08	> : 0.05	f : 0.05	3 : 0.02	] : 0.02	= : 0.02	h : 0.02	4 : 0.02	
c : 0.37	d : 0.14	g : 0.11	> : 0.05	b : 0.05	5 : 0.05	2 : 0.05	f : 0.05	= : 0.02	h : 0.02	4 : 0.02	
c : 0.28	d : 0.14	2 : 0.11	g : 0.11	> : 0.08	4 : 0.05	5 : 0.05	b : 0.02	3 : 0.02	f : 0.02	= : 0.02	h : 0.02	
] : 0.17	d : 0.14	c : 0.11	g : 0.11	> : 0.08	5 : 0.08	2 : 0.08	i : 0.02	4 : 0.02	3 : 0.02	f : 0.02	= : 0.02	h : 0.02	e : 0.02	
d : 0.17	g : 0.14	> : 0.11	c : 0.08	5 : 0.08	b : 0.05	e : 0.05	f : 0.05	] : 0.05	i : 0.02	4 : 0.02	3 : 0.02	= : 0.02	a : 0.02	h : 0.02	

#score	450.6387766259654
#seq	35
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_CDS_m2_run1.txt

#BEAR
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:13420-13632(+)$1	212	76	103	33.6457
:::ccc^^^^^^^^^^^^^^^^^^^^c	chrM:14013-14242(+)$1	229	0	27	31.1316
cccc[ccc^^^^^^^^^^^^^^^^^^^	chrM:5213-5426(+)$1	213	47	74	32.7559
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:13438-13666(+)$1	228	58	85	33.6457
:::eeeee^^^^^^^^^^^^^^^^^^e	chrM:8583-8788(+)$1	205	6	33	30.5525
ccc!!ccc^^^^^^^^^^^^^^^^^^^	chrM:10719-10922(+)$1	203	5	32	32.6028
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:11199-11405(+)$1	206	72	99	33.6457
c[ccc[ccc^^^^^^^^^^^^^^^^^^	chrM:8574-8783(+)$1	209	95	122	31.6230
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:11195-11399(+)$1	204	76	103	33.6457
c[ccc[ccc^^^^^^^^^^^^^^^^^^	chrM:8553-8755(+)$1	202	116	143	31.6230
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:11171-11377(+)$1	206	100	127	33.6457
hhhhhhhh^^^^^^^^^^^^^^^^^^^	chr9:116855077-116855329(-)$1	252	83	110	29.5809
c[ccc[ccc^^^^^^^^^^^^^^^^^^	chrM:8568-8774(+)$1	206	101	128	31.6230
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:11214-11424(+)$1	210	57	84	33.6457
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:13466-13692(+)$1	226	30	57	33.6457
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:11183-11389(+)$1	206	88	115	33.6457
^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:5226-5472(+)$1	246	49	76	32.1475
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:11167-11371(+)$1	204	104	131	33.6457
:::eeeee^^^^^^^^^^^^^^^^^^e	chrM:8515-8753(+)$1	238	74	101	30.5525
c[ccc[ccc^^^^^^^^^^^^^^^^^^	chrM:8555-8758(+)$1	203	114	141	31.6230
bb!!ccc^^^^^^^^^^^^^^^^^^^^	chrM:13696-13919(+)$1	223	29	56	32.9331
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:13316-13549(+)$1	233	180	207	33.6457
::eeeee^^^^^^^^^^^^^^^^^^^^	chrM:11916-12121(+)$1	205	0	27	33.0281
:::::ccc^^^^^^^^^^^^^^^^^^c	chr16:53190911-53191158(+)$1	247	133	160	29.0526
::ccc^^^^^^^^^^^^^^^^^^^^^^	chrM:10740-10944(+)$1	204	33	60	33.2172
::::ccc^^^^^^^^^^^^^^^^^^^^	chrM:13996-14213(+)$1	217	16	43	31.5891
'''bbccc^^^^^^^^^^^^^^^^^^^	chrM:12800-13025(+)$1	225	20	47	31.5055
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:11205-11414(+)$1	209	66	93	33.6457
((eeeee^^^^^^^^^^^^^^^^^^^^	chrM:11900-12104(+)$1	204	16	43	32.4141
cc[eeeee^^^^^^^^^^^^^^^^^^^	chrM:11912-12116(+)$1	204	3	30	32.1924
!!ccc[bb^^^^^^^^^^^^^^^^^^b	chrM:7612-7834(+)$1	222	87	114	30.9358
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:11150-11367(+)$1	217	121	148	33.6457
::ccc^^^^^^^^^^^^^^^^^^^^^^	chrM:10744-10950(+)$1	206	29	56	33.2172
((eeeee^^^^^^^^^^^^^^^^^^^^	chrM:11904-12111(+)$1	207	12	39	32.4141
::ccc^^^^^^^^^^^^^^^^^^^^^^	chrM:10725-10940(+)$1	215	48	75	33.2172
ccc!!ccc^^^^^^^^^^^^^^^^^^^	chrM:10711-10917(+)$1	206	13	40	32.6028
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:13349-13559(+)$1	210	147	174	33.6457
::eeeee[bb^^^^^^^^^^^^^^^^^	chrM:11046-11252(+)$1	206	44	71	29.7936
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:11189-11395(+)$1	206	82	109	33.6457
::eeeee^^^^^^^^^^^^^^^^^^^^	chr16:53190567-53190830(+)$1	263	12	39	33.0281
::bb[ccc^^^^^^^^^^^^^^^^^^^	chrM:13719-13923(+)$1	204	5	32	32.8744
::ffffff^^^^^^^^^^^^^^^^^^^	chrM:11177-11383(+)$1	206	94	121	33.6457
c[ccc[ccc^^^^^^^^^^^^^^^^^^	chrM:8558-8768(+)$1	210	111	138	31.6230

#otherMatches

#Seq PSSM
CAGGUUUCUACUCCAAAGACCACAUCA	chrM:13420-13632(+)$1	212	76	103	33.6457
AAAGCUAUUACCUAAAACAAUUUCACA	chrM:14013-14242(+)$1	229	0	27	31.1316
GGGCCAUUAUCGAAGAAUUCACAAAAA	chrM:5213-5426(+)$1	213	47	74	32.7559
CAGGUUUCUACUCCAAAGACCACAUCA	chrM:13438-13666(+)$1	228	58	85	33.6457
ACUGAUCAUUCUAUUUCCCCCUCUAUU	chrM:8583-8788(+)$1	205	6	33	30.5525
UGGCCUAGACUACGUACAUAACCUAAA	chrM:10719-10922(+)$1	203	5	32	32.6028
UAGGCUCACUAAACAUUCUACUACUCA	chrM:11199-11405(+)$1	206	72	99	33.6457
GACUAAUCAAACUAACCUCAAAACAAA	chrM:8574-8783(+)$1	209	95	122	31.6230
UAGGCUCACUAAACAUUCUACUACUCA	chrM:11195-11399(+)$1	204	76	103	33.6457
GACUAAUCAAACUAACCUCAAAACAAA	chrM:8553-8755(+)$1	202	116	143	31.6230
UAGGCUCACUAAACAUUCUACUACUCA	chrM:11171-11377(+)$1	206	100	127	33.6457
uuacugaaucauacauucacuuacucc	chr9:116855077-116855329(-)$1	252	83	110	29.5809
GACUAAUCAAACUAACCUCAAAACAAA	chrM:8568-8774(+)$1	206	101	128	31.6230
UAGGCUCACUAAACAUUCUACUACUCA	chrM:11214-11424(+)$1	210	57	84	33.6457
CAGGUUUCUACUCCAAAGACCACAUCA	chrM:13466-13692(+)$1	226	30	57	33.6457
UAGGCUCACUAAACAUUCUACUACUCA	chrM:11183-11389(+)$1	206	88	115	33.6457
AAUUCACAAAAAACAAUAGCCUCAUCA	chrM:5226-5472(+)$1	246	49	76	32.1475
UAGGCUCACUAAACAUUCUACUACUCA	chrM:11167-11371(+)$1	204	104	131	33.6457
ACUGAUCAUUCUAUUUCCCCCUCUAUU	chrM:8515-8753(+)$1	238	74	101	30.5525
GACUAAUCAAACUAACCUCAAAACAAA	chrM:8555-8758(+)$1	203	114	141	31.6230
CGCAGGAUUUCUCAUUACUAACAACAU	chrM:13696-13919(+)$1	223	29	56	32.9331
CAGGUUUCUACUCCAAAGACCACAUCA	chrM:13316-13549(+)$1	233	180	207	33.6457
UCUCCUGAUCAAAUAUCACUCUCCUAC	chrM:11916-12121(+)$1	205	0	27	33.0281
UUAUAGCAAUUCAAAAUUAUCUCCUGU	chr16:53190911-53191158(+)$1	247	133	160	29.0526
UCGUCCCAACAAUUAUAUUACUACCAC	chrM:10740-10944(+)$1	204	33	60	33.2172
AAAAGCUAUUACCUAAAACAAUUUCAC	chrM:13996-14213(+)$1	217	16	43	31.5891
GCAGAUGCCAACACAGCAGCCAUUCAA	chrM:12800-13025(+)$1	225	20	47	31.5055
UAGGCUCACUAAACAUUCUACUACUCA	chrM:11205-11414(+)$1	209	66	93	33.6457
UCUCCUGAUCAAAUAUCACUCUCCUAC	chrM:11900-12104(+)$1	204	16	43	32.4141
UUCUCCUGAUCAAAUAUCACUCUCCUA	chrM:11912-12116(+)$1	204	3	30	32.1924
CCUGUAUGCCCUUUUCCUAACACUCAC	chrM:7612-7834(+)$1	222	87	114	30.9358
UAGGCUCACUAAACAUUCUACUACUCA	chrM:11150-11367(+)$1	217	121	148	33.6457
UCGUCCCAACAAUUAUAUUACUACCAC	chrM:10744-10950(+)$1	206	29	56	33.2172
UCUCCUGAUCAAAUAUCACUCUCCUAC	chrM:11904-12111(+)$1	207	12	39	32.4141
UCGUCCCAACAAUUAUAUUACUACCAC	chrM:10725-10940(+)$1	215	48	75	33.2172
UGGCCUAGACUACGUACAUAACCUAAA	chrM:10711-10917(+)$1	206	13	40	32.6028
CAGGUUUCUACUCCAAAGACCACAUCA	chrM:13349-13559(+)$1	210	147	174	33.6457
ACAGCCACAGAACUAAUCAUAUUUUAU	chrM:11046-11252(+)$1	206	44	71	29.7936
UAGGCUCACUAAACAUUCUACUACUCA	chrM:11189-11395(+)$1	206	82	109	33.6457
UAGCCAGUCUAAAAAUUUUAUGAAUGU	chr16:53190567-53190830(+)$1	263	12	39	33.0281
UCGCAGGAUUUCUCAUUACUAACAACA	chrM:13719-13923(+)$1	204	5	32	32.8744
UAGGCUCACUAAACAUUCUACUACUCA	chrM:11177-11383(+)$1	206	94	121	33.6457
GACUAAUCAAACUAACCUCAAAACAAA	chrM:8558-8768(+)$1	210	111	138	31.6230

#DB
..((((((...................	chrM:13420-13632(+)$1	1	76	103	33.6457
...(((....................)	chrM:14013-14242(+)$1	1	0	27	31.1316
((((.(((...................	chrM:5213-5426(+)$1	1	47	74	32.7559
..((((((...................	chrM:13438-13666(+)$1	1	58	85	33.6457
...(((((..................)	chrM:8583-8788(+)$1	1	6	33	30.5525
(((..(((...................	chrM:10719-10922(+)$1	1	5	32	32.6028
..((((((...................	chrM:11199-11405(+)$1	1	72	99	33.6457
(.(((.(((..................	chrM:8574-8783(+)$1	1	95	122	31.6230
..((((((...................	chrM:11195-11399(+)$1	1	76	103	33.6457
(.(((.(((..................	chrM:8553-8755(+)$1	1	116	143	31.6230
..((((((...................	chrM:11171-11377(+)$1	1	100	127	33.6457
((((((((...................	chr9:116855077-116855329(-)$1	1	83	110	29.5809
(.(((.(((..................	chrM:8568-8774(+)$1	1	101	128	31.6230
..((((((...................	chrM:11214-11424(+)$1	1	57	84	33.6457
..((((((...................	chrM:13466-13692(+)$1	1	30	57	33.6457
..((((((...................	chrM:11183-11389(+)$1	1	88	115	33.6457
...........................	chrM:5226-5472(+)$1	1	49	76	32.1475
..((((((...................	chrM:11167-11371(+)$1	1	104	131	33.6457
...(((((..................)	chrM:8515-8753(+)$1	1	74	101	30.5525
(.(((.(((..................	chrM:8555-8758(+)$1	1	114	141	31.6230
((..(((....................	chrM:13696-13919(+)$1	1	29	56	32.9331
..((((((...................	chrM:13316-13549(+)$1	1	180	207	33.6457
..(((((....................	chrM:11916-12121(+)$1	1	0	27	33.0281
.....(((..................)	chr16:53190911-53191158(+)$1	1	133	160	29.0526
..(((......................	chrM:10740-10944(+)$1	1	33	60	33.2172
....(((....................	chrM:13996-14213(+)$1	1	16	43	31.5891
...(((((...................	chrM:12800-13025(+)$1	1	20	47	31.5055
..((((((...................	chrM:11205-11414(+)$1	1	66	93	33.6457
..(((((....................	chrM:11900-12104(+)$1	1	16	43	32.4141
((.(((((...................	chrM:11912-12116(+)$1	1	3	30	32.1924
..(((.((..................)	chrM:7612-7834(+)$1	1	87	114	30.9358
..((((((...................	chrM:11150-11367(+)$1	1	121	148	33.6457
..(((......................	chrM:10744-10950(+)$1	1	29	56	33.2172
..(((((....................	chrM:11904-12111(+)$1	1	12	39	32.4141
..(((......................	chrM:10725-10940(+)$1	1	48	75	33.2172
(((..(((...................	chrM:10711-10917(+)$1	1	13	40	32.6028
..((((((...................	chrM:13349-13559(+)$1	1	147	174	33.6457
..(((((.((.................	chrM:11046-11252(+)$1	1	44	71	29.7936
..((((((...................	chrM:11189-11395(+)$1	1	82	109	33.6457
..(((((....................	chr16:53190567-53190830(+)$1	1	12	39	33.0281
..((.(((...................	chrM:13719-13923(+)$1	1	5	32	32.8744
..((((((...................	chrM:11177-11383(+)$1	1	94	121	33.6457
(.(((.(((..................	chrM:8558-8768(+)$1	1	111	138	31.6230

#PSSM
: : 0.62	c : 0.20	( : 0.04	h : 0.02	^ : 0.02	b : 0.02	' : 0.02	! : 0.02	
: : 0.62	[ : 0.11	c : 0.09	( : 0.04	h : 0.02	^ : 0.02	b : 0.02	' : 0.02	! : 0.02	
f : 0.34	c : 0.27	: : 0.11	e : 0.11	h : 0.02	^ : 0.02	! : 0.02	' : 0.02	[ : 0.02	b : 0.02	
f : 0.34	c : 0.25	e : 0.18	! : 0.06	: : 0.04	b : 0.04	h : 0.02	^ : 0.02	
f : 0.34	c : 0.27	e : 0.18	[ : 0.04	! : 0.04	h : 0.02	^ : 0.02	: : 0.02	b : 0.02	
f : 0.34	c : 0.20	e : 0.18	[ : 0.13	^ : 0.09	h : 0.02	
f : 0.34	c : 0.30	e : 0.18	^ : 0.11	h : 0.02	b : 0.02	
f : 0.34	^ : 0.25	c : 0.25	e : 0.06	h : 0.02	b : 0.02	[ : 0.02	
^ : 0.86	c : 0.11	b : 0.02	
^ : 0.97	b : 0.02	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.88	c : 0.04	e : 0.04	b : 0.02	

#score	1396.1412018763217
#seq	43
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_UTR_m1_run2.txt

#BEAR
a[fffffftttttttttttfffff	chr16:249020-249320(-)$1	300	215	239	23.0448
gg[ddddwwwwwwwwwwwwwwddd	chr10:58119680-58119961(-)$1	281	218	242	21.0696
ffffffvvvvvvvvvvvvvfffff	chr12:123087606-123087862(+)$1	256	115	139	22.3408
%ddddyyyyyyyyyyyyyyyyddd	chr12:4652831-4653153(+)$1	322	161	185	19.5335
eeeeewwwwwwwwwwwwwweeeee	chr16:18820568-18820855(-)$1	287	90	114	21.0439
hhhhhhvvvvvvvvvvvvvhhhhh	chr1:166810096-166810410(+)$1	314	25	49	20.8366
:gggggggtttttttttttggggg	chr9:100372524-100372820(-)$1	296	154	178	22.3488
"ddddyyyyyyyyyyyyyyyyddd	chr3:127771597-127771845(+)$1	248	60	84	20.0965
ggeeeeevvvvvvvvvvvvveeee	chr3:183881959-183882184(+)$1	225	107	131	22.9858
!!eeeeevvvvvvvvvvvvveeee	chr5:33448545-33448789(+)$1	244	23	47	23.3209
$$fffffftttttttttttfffff	chr2:42797533-42797744(+)$1	211	19	43	22.7630
dddd[bbuuuuuuuuuuuubbddd	chr14:91931540-91931778(-)$1	238	59	83	22.0803
ggggggguuuuuuuuuuuuggggg	chr5:133561392-133561665(-)$1	273	157	181	23.4212
dddeeeeeuuuuuuuuuuuueeee	chr16:89777633-89777909(-)$1	276	89	113	22.2735
ggggg[bbtttttttttttbb]gg	chr3:121435771-121436001(-)$1	230	188	212	22.6932
dddd[bbuuuuuuuuuuuubbddd	chr6:144164394-144164721(+)$1	327	9	33	22.0803
!!fffffftttttttttttfffff	chr14:31590533-31590752(-)$1	219	160	184	23.2714
c:eeeeevvvvvvvvvvvvveeee	chr7:86817461-86817715(+)$1	254	96	120	21.9343
!!cccwwwwwwwwwwwwwwccc22	chr14:94545832-94546109(-)$1	277	101	125	21.2869
####ddddtttttttttttdddd4	chr5:118811417-118811666(+)$1	249	199	223	22.6455
eeeeddddtttttttttttdddd2	chr2:63824484-63824741(+)$1	257	145	169	22.3860
&ddddwwwwwwwwwwwwwwdddd2	chr5:179321327-179321642(-)$1	315	36	60	19.9998
::fffffftttttttttttfffff	chr21:33974108-33974360(-)$1	252	99	123	21.0449
ggggggguuuuuuuuuuuuggggg	chr13:111927770-111928134(+)$1	364	1	25	23.4212
"""eeeeettttttttttteeeee	chr12:102545409-102545702(+)$1	293	189	213	23.2396
d!!eeeeeuuuuuuuuuuuueeee	chr20:61912572-61912800(+)$1	228	151	175	22.7461
gggggggvvvvvvvvvvvvvgggg	chr22:36912438-36912724(-)$1	286	197	221	23.1652
eeee[cccuuuuuuuuuuuuccce	chr12:76444262-76444492(-)$1	230	197	221	22.9309
e!!eeeeettttttttttteeeee	chr2:128051527-128051782(-)$1	255	145	169	23.2251
ffffdddduuuuuuuuuuuudddd	chr3:195997182-195997431(-)$1	249	214	238	21.9588
""fffffftttttttttttfffff	chr2:71575817-71576133(+)$1	316	251	275	23.1329
[ddddwwwwwwwwwwwwwwdddd]	chr21:43176747-43177080(-)$1	333	304	328	20.7832
%%%%cccuuuuuuuuuuuuccc66	chr12:133617745-133618016(+)$1	271	126	150	20.1021
eee[cccuuuuuuuuuuuuccc]e	chr11:93463380-93463714(-)$1	334	65	89	23.6112
hhhhhhhhttttttttttthhhhh	chr4:107153997-107154232(-)$1	235	79	103	20.7143
ggggddddvvvvvvvvvvvvvddd	chr18:12421442-12421728(+)$1	286	145	169	21.7488
ccc[cccuuuuuuuuuuuuccc]c	chr8:21955554-21955802(+)$1	248	220	244	23.5480
b[ddddbbtttttttttttbb]dd	chr11:129992153-129992374(+)$1	221	132	156	22.0281
eeeeeccctttttttttttccc]e	chr3:99536625-99536919(+)$1	294	36	60	23.6105
ffffffvvvvvvvvvvvvvfffff	chr7:148543486-148543722(-)$1	236	43	67	22.3408
ggggggguuuuuuuuuuuuggggg	chr17:79804204-79804410(-)$1	206	54	78	23.4212
dda[cccuuuuuuuuuuuuccc]a	chr5:176943199-176943509(-)$1	310	239	263	23.3149
g"""dddduuuuuuuuuuuudddd	chr1:26769173-26769460(+)$1	287	241	265	22.2600
hhhhhhhhttttttttttthhhhh	chr10:102738586-102738827(+)$1	241	31	55	20.7143
f####ccctttttttttttccc33	chr6:4892048-4892372(+)$1	324	70	94	23.1542
eebbddddtttttttttttdddd]	chr4:76415686-76416014(-)$1	328	103	127	21.9553
gggggccctttttttttttccc44	chr7:36450585-36450833(+)$1	248	108	132	23.6153
ffffffvvvvvvvvvvvvvfffff	chr3:97673108-97673431(-)$1	323	42	66	22.3408
$$fffffftttttttttttfffff	chr2:42797476-42797733(+)$1	257	76	100	22.7630
[gggggggtttttttttttggggg	chr1:154148590-154148825(-)$1	235	134	158	23.3706
eeeeeeeettttttttttteeeee	chr22:36677896-36678127(-)$1	231	199	223	22.8897
ffffffawwwwwwwwwwwwwwa]f	chr16:3713357-3713655(-)$1	298	18	42	21.0649
##ccc[bbtttttttttttbb]cc	chr2:95756084-95756362(-)$1	278	72	96	22.5452
:::a[ccctttttttttttccc]a	chr2:233656012-233656255(+)$1	243	64	88	20.6411
bffffffuuuuuuuuuuuufffff	chr9:134350464-134350713(+)$1	249	181	205	22.6214
====[ccctttttttttttccc==	chr20:62905016-62905290(+)$1	274	47	71	23.7167
[eeeeewwwwwwwwwwwwwweeee	chr1:31732626-31733020(-)$1	394	230	254	21.7397
a!!cccauuuuuuuuuuuua]ccc	chr2:47397776-47398004(-)$1	228	78	102	23.5963
ddd[bbwwwwwwwwwwwwwwbb]d	chr8:124371464-124371676(-)$1	212	77	101	20.3332

#otherMatches

#Seq PSSM
CACUUGGGGUUCAUUCAGAUCCGA	chr16:249020-249320(-)$1	300	215	239	23.0448
GAGUGGGGAAGGAAGGAGGAUUUC	chr10:58119680-58119961(-)$1	281	218	242	21.0696
UACUCUCUAUAGUCAACCCAGAGU	chr12:123087606-123087862(+)$1	256	115	139	22.3408
ACAAGAUAAACCAAAACCUAACUU	chr12:4652831-4653153(+)$1	322	161	185	19.5335
CCUAGGAAAUCUCGGUGCACUAGG	chr16:18820568-18820855(-)$1	287	90	114	21.0439
CUCCCCCAUCAUAGGCUUUGGGGA	chr1:166810096-166810410(+)$1	314	25	49	20.8366
UGGGGAUCAGCCCCAAAAAGAUCU	chr9:100372524-100372820(-)$1	296	154	178	22.3488
UUUUGUUUCUCCCAUCAAAGUCAA	chr3:127771597-127771845(+)$1	248	60	84	20.0965
GAGGGCUCACACCCAGACCCAGCC	chr3:183881959-183882184(+)$1	225	107	131	22.9858
AUUAUUUCUUUCCCAUUUCUAAAU	chr5:33448545-33448789(+)$1	244	23	47	23.3209
GUUCUGUACUUCCUUUAAUUACAG	chr2:42797533-42797744(+)$1	211	19	43	22.7630
UUUUACAACCGCUACAUAAUGAAA	chr14:91931540-91931778(-)$1	238	59	83	22.0803
GCAGCUGAACGAGUGCAAGCAGCU	chr5:133561392-133561665(-)$1	273	157	181	23.4212
GACUGGCCGAAGCACUGGAAGGCC	chr16:89777633-89777909(-)$1	276	89	113	22.2735
GUUUGAGCAAGCAGGCCAAGCCCA	chr3:121435771-121436001(-)$1	230	188	212	22.6932
GCGAGCCUAUGUAACUUCCGGUCG	chr6:144164394-144164721(+)$1	327	9	33	22.0803
GCAGGUAAUAUCUUCAUGUUUAUC	chr14:31590533-31590752(-)$1	219	160	184	23.2714
CAGCCAUCUCUUCUAGCCCCAUGG	chr7:86817461-86817715(+)$1	254	96	120	21.9343
AAAAUGGAAGGAAGUGAAGAUUGA	chr14:94545832-94546109(-)$1	277	101	125	21.2869
UUUAGUAUUUGAUAAAUUUAUACA	chr5:118811417-118811666(+)$1	249	199	223	22.6455
AGAUUUACUGAAAGCAAAUGUGAA	chr2:63824484-63824741(+)$1	257	145	169	22.3860
CGCAGAAGAGAACAAGAACCUGCA	chr5:179321327-179321642(-)$1	315	36	60	19.9998
AUGCCUAUUUAAACUCACCAUGGG	chr21:33974108-33974360(-)$1	252	99	123	21.0449
UAAGAUAUAAAGCAAUAAUUGUCU	chr13:111927770-111928134(+)$1	364	1	25	23.4212
CCCGCUUCAGAACAUUGAAGAAGC	chr12:102545409-102545702(+)$1	293	189	213	23.2396
ACCGUCCCCACCAGGCCCUCGGGA	chr20:61912572-61912800(+)$1	228	151	175	22.7461
AGGGUGAGCCGCCAUCUCCAUCAC	chr22:36912438-36912724(-)$1	286	197	221	23.1652
UCCUGCAAAGAAAUAAUUGGUUGA	chr12:76444262-76444492(-)$1	230	197	221	22.9309
GGACCGCGGUGAGACGUUGCGCGG	chr2:128051527-128051782(-)$1	255	145	169	23.2251
UGUCUUCUGAAAUAAUGAAAAGAA	chr3:195997182-195997431(-)$1	249	214	238	21.9588
UUUCUUGAAAAUAGCCAUGUCGAG	chr2:71575817-71576133(+)$1	316	251	275	23.1329
GCAUGAACUUCCUGCACUGCAUGG	chr21:43176747-43177080(-)$1	333	304	328	20.7832
UCCUGGUCCCUACAAAUAAGCCUG	chr12:133617745-133618016(+)$1	271	126	150	20.1021
GAGUUUUAAAGGUUAAUCAAAAUU	chr11:93463380-93463714(-)$1	334	65	89	23.6112
AUUUAGGCGUGUAUUAAAAGCCUG	chr4:107153997-107154232(-)$1	235	79	103	20.7143
UGGAUCCAGUGGAAAAGAAAAUGG	chr18:12421442-12421728(+)$1	286	145	169	21.7488
CAGAGAGCAACCUGAUUACCUCCC	chr8:21955554-21955802(+)$1	248	220	244	23.5480
ugguggaggaCCGAGAUUACUACU	chr11:129992153-129992374(+)$1	221	132	156	22.0281
GGCGGGGCAGAGGUGUGACGUCAU	chr3:99536625-99536919(+)$1	294	36	60	23.6105
UUCCAAUCGUCAGAAAAUUUUGGA	chr7:148543486-148543722(-)$1	236	43	67	22.3408
GGCAGAGAGGAUCACAGAGUUCUG	chr17:79804204-79804410(-)$1	206	54	78	23.4212
CCUGGGCGAGAAAGAAGAAGCUGA	chr5:176943199-176943509(-)$1	310	239	263	23.3149
AUCCUAACCCUUGAAAUUCUGUUA	chr1:26769173-26769460(+)$1	287	241	265	22.2600
UGUUCUCCGUCCUCGUGCGGGAGA	chr10:102738586-102738827(+)$1	241	31	55	20.7143
GCACAUUGACCAGAACAAACAGGA	chr6:4892048-4892372(+)$1	324	70	94	23.1542
AGGCUACAGAUGUCCAUUAUGUAU	chr4:76415686-76416014(-)$1	328	103	127	21.9553
UCGUGGCCGAUUUGACAAGGGCAA	chr7:36450585-36450833(+)$1	248	108	132	23.6153
GAGAAGGAAUACUUAUUAACUUCU	chr3:97673108-97673431(-)$1	323	42	66	22.3408
GUUCUGUACUUCCUUUAAUUACAG	chr2:42797476-42797733(+)$1	257	76	100	22.7630
AUCCAGCUGGUUGAAGAAGAGCUG	chr1:154148590-154148825(-)$1	235	134	158	23.3706
GGGGACCAAAUAUAUUUAAUGGUU	chr22:36677896-36678127(-)$1	231	199	223	22.8897
GCCGCCCUCAUCCUUUCUUCUGUG	chr16:3713357-3713655(-)$1	298	18	42	21.0649
UCACCCGGUUUCUCCUUUUCUAGG	chr2:95756084-95756362(-)$1	278	72	96	22.5452
AACUGAGCAAACGGAAAAAGCUGA	chr2:233656012-233656255(+)$1	243	64	88	20.6411
AUGAAGAGAAAUAACUGGAUCUUU	chr9:134350464-134350713(+)$1	249	181	205	22.6214
ACUGCUGGGCUCAUCCACACCAUG	chr20:62905016-62905290(+)$1	274	47	71	23.7167
CGGUGGCCAUAUUCCAAAAACCAC	chr1:31732626-31733020(-)$1	394	230	254	21.7397
CUUCCUCUUUGAUCUCUUUGUAGG	chr2:47397776-47398004(-)$1	228	78	102	23.5963
UACAUGUUCGCUUCCAUUACCAGG	chr8:124371464-124371676(-)$1	212	77	101	20.3332

#DB
(.((((((...........)))))	chr16:249020-249320(-)$1	1	215	239	23.0448
((.((((..............)))	chr10:58119680-58119961(-)$1	1	218	242	21.0696
((((((.............)))))	chr12:123087606-123087862(+)$1	1	115	139	22.3408
.((((................)))	chr12:4652831-4653153(+)$1	1	161	185	19.5335
(((((..............)))))	chr16:18820568-18820855(-)$1	1	90	114	21.0439
((((((.............)))))	chr1:166810096-166810410(+)$1	1	25	49	20.8366
.(((((((...........)))))	chr9:100372524-100372820(-)$1	1	154	178	22.3488
.((((................)))	chr3:127771597-127771845(+)$1	1	60	84	20.0965
))(((((.............))))	chr3:183881959-183882184(+)$1	1	107	131	22.9858
..(((((.............))))	chr5:33448545-33448789(+)$1	1	23	47	23.3209
..((((((...........)))))	chr2:42797533-42797744(+)$1	1	19	43	22.7630
((((.((............)))))	chr14:91931540-91931778(-)$1	1	59	83	22.0803
(((((((............)))))	chr5:133561392-133561665(-)$1	1	157	181	23.4212
)))(((((............))))	chr16:89777633-89777909(-)$1	1	89	113	22.2735
(((((.((...........)).))	chr3:121435771-121436001(-)$1	1	188	212	22.6932
((((.((............)))))	chr6:144164394-144164721(+)$1	1	9	33	22.0803
..((((((...........)))))	chr14:31590533-31590752(-)$1	1	160	184	23.2714
).(((((.............))))	chr7:86817461-86817715(+)$1	1	96	120	21.9343
..(((..............)))..	chr14:94545832-94546109(-)$1	1	101	125	21.2869
....((((...........)))).	chr5:118811417-118811666(+)$1	1	199	223	22.6455
((((((((...........)))).	chr2:63824484-63824741(+)$1	1	145	169	22.3860
.((((..............)))).	chr5:179321327-179321642(-)$1	1	36	60	19.9998
..((((((...........)))))	chr21:33974108-33974360(-)$1	1	99	123	21.0449
(((((((............)))))	chr13:111927770-111928134(+)$1	1	1	25	23.4212
...(((((...........)))))	chr12:102545409-102545702(+)$1	1	189	213	23.2396
(..(((((............))))	chr20:61912572-61912800(+)$1	1	151	175	22.7461
(((((((.............))))	chr22:36912438-36912724(-)$1	1	197	221	23.1652
((((.(((............))))	chr12:76444262-76444492(-)$1	1	197	221	22.9309
(..(((((...........)))))	chr2:128051527-128051782(-)$1	1	145	169	23.2251
))))((((............))))	chr3:195997182-195997431(-)$1	1	214	238	21.9588
..((((((...........)))))	chr2:71575817-71576133(+)$1	1	251	275	23.1329
.((((..............)))).	chr21:43176747-43177080(-)$1	1	304	328	20.7832
....(((............)))..	chr12:133617745-133618016(+)$1	1	126	150	20.1021
(((.(((............))).)	chr11:93463380-93463714(-)$1	1	65	89	23.6112
((((((((...........)))))	chr4:107153997-107154232(-)$1	1	79	103	20.7143
((((((((.............)))	chr18:12421442-12421728(+)$1	1	145	169	21.7488
(((.(((............))).)	chr8:21955554-21955802(+)$1	1	220	244	23.5480
(.((((((...........)).))	chr11:129992153-129992374(+)$1	1	132	156	22.0281
((((((((...........))).)	chr3:99536625-99536919(+)$1	1	36	60	23.6105
((((((.............)))))	chr7:148543486-148543722(-)$1	1	43	67	22.3408
(((((((............)))))	chr17:79804204-79804410(-)$1	1	54	78	23.4212
))(.(((............))).)	chr5:176943199-176943509(-)$1	1	239	263	23.3149
(...((((............))))	chr1:26769173-26769460(+)$1	1	241	265	22.2600
((((((((...........)))))	chr10:102738586-102738827(+)$1	1	31	55	20.7143
(....(((...........)))..	chr6:4892048-4892372(+)$1	1	70	94	23.1542
((((((((...........)))).	chr4:76415686-76416014(-)$1	1	103	127	21.9553
((((((((...........)))..	chr7:36450585-36450833(+)$1	1	108	132	23.6153
((((((.............)))))	chr3:97673108-97673431(-)$1	1	42	66	22.3408
..((((((...........)))))	chr2:42797476-42797733(+)$1	1	76	100	22.7630
.(((((((...........)))))	chr1:154148590-154148825(-)$1	1	134	158	23.3706
)))(((((...........)))))	chr22:36677896-36678127(-)$1	1	199	223	22.8897
(((((((..............).)	chr16:3713357-3713655(-)$1	1	18	42	21.0649
..(((.((...........)).))	chr2:95756084-95756362(-)$1	1	72	96	22.5452
...(.(((...........))).)	chr2:233656012-233656255(+)$1	1	64	88	20.6411
(((((((............)))))	chr9:134350464-134350713(+)$1	1	181	205	22.6214
((((.(((...........)))))	chr20:62905016-62905290(+)$1	1	47	71	23.7167
.(((((..............))))	chr1:31732626-31733020(-)$1	1	230	254	21.7397
(..((((............).)))	chr2:47397776-47398004(-)$1	1	78	102	23.5963
(((.((..............)).)	chr8:124371464-124371676(-)$1	1	77	101	20.3332

#PSSM
g : 0.16	e : 0.13	f : 0.10	d : 0.10	h : 0.05	: : 0.05	" : 0.05	! : 0.05	[ : 0.05	a : 0.03	% : 0.03	$ : 0.03	c : 0.03	# : 0.03	b : 0.03	& : 0.01	= : 0.01	
g : 0.18	d : 0.15	e : 0.13	f : 0.10	! : 0.10	h : 0.05	: : 0.05	# : 0.05	" : 0.05	[ : 0.03	$ : 0.03	% : 0.01	c : 0.01	= : 0.01	
f : 0.20	e : 0.16	d : 0.15	g : 0.15	h : 0.05	c : 0.05	! : 0.05	# : 0.03	" : 0.03	[ : 0.01	% : 0.01	a : 0.01	b : 0.01	: : 0.01	= : 0.01	
e : 0.22	f : 0.20	g : 0.15	d : 0.13	[ : 0.06	h : 0.05	c : 0.05	# : 0.03	% : 0.01	" : 0.01	b : 0.01	a : 0.01	= : 0.01	
d : 0.20	f : 0.18	e : 0.18	g : 0.13	c : 0.11	[ : 0.08	h : 0.05	# : 0.01	b : 0.01	
f : 0.18	c : 0.18	e : 0.15	d : 0.13	g : 0.10	w : 0.06	h : 0.05	b : 0.05	y : 0.03	[ : 0.03	
c : 0.16	e : 0.13	f : 0.11	d : 0.11	w : 0.10	g : 0.10	b : 0.08	v : 0.06	y : 0.03	h : 0.03	a : 0.03	
u : 0.18	w : 0.13	v : 0.13	f : 0.10	d : 0.10	c : 0.10	e : 0.08	b : 0.05	y : 0.03	g : 0.03	h : 0.03	
t : 0.40	u : 0.27	v : 0.15	w : 0.13	y : 0.03	
t : 0.40	u : 0.27	v : 0.15	w : 0.13	y : 0.03	
t : 0.40	u : 0.27	v : 0.15	w : 0.13	y : 0.03	
t : 0.40	u : 0.27	v : 0.15	w : 0.13	y : 0.03	
t : 0.40	u : 0.27	v : 0.15	w : 0.13	y : 0.03	
t : 0.40	u : 0.27	v : 0.15	w : 0.13	y : 0.03	
t : 0.40	u : 0.27	v : 0.15	w : 0.13	y : 0.03	
t : 0.40	u : 0.27	v : 0.15	w : 0.13	y : 0.03	
t : 0.40	u : 0.27	v : 0.15	w : 0.13	y : 0.03	
t : 0.40	u : 0.27	v : 0.15	w : 0.13	y : 0.03	
t : 0.40	u : 0.27	v : 0.15	w : 0.13	y : 0.03	
f : 0.16	c : 0.16	g : 0.08	v : 0.08	b : 0.08	u : 0.08	d : 0.08	w : 0.06	e : 0.06	h : 0.05	y : 0.03	a : 0.01	
c : 0.18	f : 0.16	e : 0.16	d : 0.11	g : 0.10	b : 0.10	h : 0.05	w : 0.03	y : 0.03	v : 0.01	] : 0.01	
d : 0.22	c : 0.20	f : 0.16	e : 0.16	g : 0.10	h : 0.05	] : 0.05	a : 0.01	b : 0.01	
d : 0.23	f : 0.16	e : 0.16	g : 0.11	] : 0.11	h : 0.05	c : 0.05	2 : 0.01	6 : 0.01	3 : 0.01	4 : 0.01	= : 0.01	
e : 0.22	f : 0.18	d : 0.16	g : 0.11	h : 0.05	2 : 0.05	c : 0.05	4 : 0.03	] : 0.03	a : 0.03	6 : 0.01	3 : 0.01	= : 0.01	

#score	1312.8690656066742
#seq	59
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_transcript_m2_run2.txt

#BEAR
dd[ddddssssssssssdddd	chr19:45981798-45982021(-)$1	223	168	189	16.6296
c[cccuuuuuuuuuuuuccc]	chr20:37393626-37393910(+)$1	284	192	213	18.1098
=======ssssssssss====	chr5:134259680-134259904(+)$1	224	196	217	16.3196
h[cccuuuuuuuuuuuuccc]	chr17:76758487-76758709(-)$1	222	70	91	17.8604
gggg[bbtttttttttttbb]	chr14:58706552-58706787(-)$1	235	31	52	16.4022
eeee[bbssssssssssbb22	chr13:92000503-92000748(+)$1	245	169	190	15.3199
h[cccuuuuuuuuuuuuccc2	chr1:169076104-169076327(+)$1	223	7	28	17.6877
f[eeeeesssssssssseeee	chr1:16993315-16993535(-)$1	220	112	133	16.9597
dddddddssssssssssdddd	chr1:90390387-90390644(+)$1	257	129	150	16.6685
f[eeeeesssssssssseeee	chr1:17066912-17067140(+)$1	228	118	139	16.9597
gggggggssssssssssgggg	chr4:39459954-39460161(-)$1	207	182	203	16.1086
##ffffffrrrrrrrrrffff	chr10:128256276-128256488(-)$1	212	73	94	8.1870
f[eeeeesssssssssseeee	chr1:16993335-16993541(-)$1	206	118	139	16.9597
!!ddddwwwwwwwwwwwwwwd	chr18:1691765-1691978(+)$1	213	179	200	17.1377
f[cccuuuuuuuuuuuuccc]	chr7:103029314-103029525(-)$1	211	171	192	17.9971
::ddddtttttttttttdddd	chrM:488-713(+)$1	225	22	43	16.3039
:::ddddssssssssssdddd	chrM:12107-12350(+)$1	243	0	21	14.3883
fffffffwwwwwwwwwwwwww	chr11:618794-619008(-)$1	214	34	55	15.0895
d[eeeeevvvvvvvvvvvvve	chrM:1162-1377(+)$1	215	18	39	15.2924
b[dddduuuuuuuuuuuuddd	chr5:140090800-140091031(+)$1	231	148	169	18.1005
eeewwwwwwwwwwwwwweeee	chr5:135416087-135416329(-)$1	242	156	177	15.6544
dddd[bbssssssssssbbdd	chr5:180692567-180692776(+)$1	209	132	153	15.8412
dddddddssssssssssdddd	chr1:90390444-90390734(+)$1	290	72	93	16.6685
:eeeeettttttttttteeee	chr11:72414344-72414560(-)$1	216	61	82	16.8558
dd!!cccssssssssssccc2	chr14:50695235-50695439(-)$1	204	21	42	16.6974
gggggggssssssssssgggg	chr9:19380096-19380331(-)$1	235	84	105	16.1086
HHeeeeesssssssssseeee	chr3:45730391-45730627(-)$1	236	70	91	15.6858
gggggggssssssssssgggg	chr18:1691755-1691965(+)$1	210	165	186	16.1086
dd!!cccssssssssssccc2	chr14:50695239-50695456(-)$1	217	38	59	16.6974
$$$$cccssssssssssccc5	chr10:18934784-18935039(-)$1	255	116	137	15.4572
::eeeeerrrrrrrrreeeee	chr2:27274018-27274235(+)$1	217	0	21	7.7527
dddd[bbssssssssssbbdd	chr5:180692576-180692792(+)$1	216	123	144	15.8412
b[dddduuuuuuuuuuuuddd	chr5:140090781-140090996(+)$1	215	167	188	18.1005
d[dddd[avvvvvvvvvvvvv	chr9:140610685-140610934(+)$1	249	110	131	13.9165
d[eeeeevvvvvvvvvvvvve	chrM:1177-1382(+)$1	205	3	24	15.2924
#bb[cccssssssssssccc]	chr11:9481795-9482048(-)$1	253	21	42	16.5319
f[cccuuuuuuuuuuuuccc]	chr7:103029305-103029514(-)$1	209	160	181	17.9971
!!ddddxxxxxxxxxxxxxxx	chr17:26919458-26919700(-)$1	242	26	47	13.1846
[ffffffssssssssssffff	chr4:39460410-39460632(-)$1	222	100	121	15.4344
$$$$cccssssssssssccc5	chr10:18934731-18934984(-)$1	253	61	82	15.4572
bbddddtttttttttttdddd	chr6:34555094-34555366(-)$1	272	165	186	17.4658
iiiiiwwwwwwwwwwwwwwii	chr7:149292176-149292421(-)$1	245	211	232	16.4184
:eeeeettttttttttteeee	chr11:72414339-72414544(-)$1	205	45	66	16.8558
[bbddddssssssssssdddd	chr19:33667905-33668141(+)$1	236	189	210	16.4066
:::ddddssssssssssdddd	chrM:12060-12299(+)$1	239	47	68	14.3883

#otherMatches

#Seq PSSM
AACUAAGCGCCUUAAAUCUUA	chr19:45981798-45982021(-)$1	223	168	189	16.6296
UGUAUAAAGUAGGAAAGGUAG	chr20:37393626-37393910(+)$1	284	192	213	18.1098
AGCCUUCUCCUAUUUAUGGGG	chr5:134259680-134259904(+)$1	224	196	217	16.3196
gugauuaggacauguauaucu	chr17:76758487-76758709(-)$1	222	70	91	17.8604
UACGCGGAGAAUAUAAAACCA	chr14:58706552-58706787(-)$1	235	31	52	16.4022
CGGCGGCGGCACAUGGGGCAG	chr13:92000503-92000748(+)$1	245	169	190	15.3199
CAUCUGGAACUCAGAGAAGAA	chr1:169076104-169076327(+)$1	223	7	28	17.6877
auaccaugaucacgaaggugg	chr1:16993315-16993535(-)$1	220	112	133	16.9597
uuagguacuauacucauuacc	chr1:90390387-90390644(+)$1	257	129	150	16.6685
auaccaugaucacgaaggugg	chr1:17066912-17067140(+)$1	228	118	139	16.9597
CUGCACGUUCCAAGCGUUGUG	chr4:39459954-39460161(-)$1	207	182	203	16.1086
ACUCGAGGCUUCUUCUCCCUU	chr10:128256276-128256488(-)$1	212	73	94	8.1870
auaccaugaucacgaaggugg	chr1:16993335-16993541(-)$1	206	118	139	16.9597
aauugagcaaagaaugauaau	chr18:1691765-1691978(+)$1	213	179	200	17.1377
UGAUGAUUUCUAGUUAGCGUG	chr7:103029314-103029525(-)$1	211	171	192	17.9971
CCCAGCACACACACACCGCUG	chrM:488-713(+)$1	225	22	43	16.3039
AACCCCGACAUCAUUACCGGG	chrM:12107-12350(+)$1	243	0	21	14.3883
UCCCACCAACCAGCCACUCCC	chr11:618794-619008(-)$1	214	34	55	15.0895
GUGCUUCAUAUCCCUCUAGAG	chrM:1162-1377(+)$1	215	18	39	15.2924
CAGUCCUUUUACCUCUCUGGG	chr5:140090800-140091031(+)$1	231	148	169	18.1005
CGGUAUAAUCUGUCACUCUGA	chr5:135416087-135416329(-)$1	242	156	177	15.6544
GAGGUGGAGUGGCCUGGCCCC	chr5:180692567-180692776(+)$1	209	132	153	15.8412
uuagguacuauacucauuacc	chr1:90390444-90390734(+)$1	290	72	93	16.6685
GAAUUCAAAUGUGGGAGGAAU	chr11:72414344-72414560(-)$1	216	61	82	16.8558
UUUGUGUGUCUAUGAAAGCAG	chr14:50695235-50695439(-)$1	204	21	42	16.6974
GCGGAAGUUGGCCCUCUUUUC	chr9:19380096-19380331(-)$1	235	84	105	16.1086
guggcgcaauggauaacgcgu	chr3:45730391-45730627(-)$1	236	70	91	15.6858
aaacuuuagccaaauucagag	chr18:1691755-1691965(+)$1	210	165	186	16.1086
UUUGUGUGUCUAUGAAAGCAG	chr14:50695239-50695456(-)$1	217	38	59	16.6974
ucgaacuccuaacuucaagug	chr10:18934784-18935039(-)$1	255	116	137	15.4572
UCCACUGGUCAGUGAACAGUG	chr2:27274018-27274235(+)$1	217	0	21	7.7527
GAGGUGGAGUGGCCUGGCCCC	chr5:180692576-180692792(+)$1	216	123	144	15.8412
CAGUCCUUUUACCUCUCUGGG	chr5:140090781-140090996(+)$1	215	167	188	18.1005
uggugggggaggaaguugugg	chr9:140610685-140610934(+)$1	249	110	131	13.9165
GUGCUUCAUAUCCCUCUAGAG	chrM:1177-1382(+)$1	205	3	24	15.2924
AGGACAGAAAGAGAGACCUGA	chr11:9481795-9482048(-)$1	253	21	42	16.5319
UGAUGAUUUCUAGUUAGCGUG	chr7:103029305-103029514(-)$1	209	160	181	17.9971
AUCUCCGUCCCAUCUCUUAGA	chr17:26919458-26919700(-)$1	242	26	47	13.1846
UCUUUGCUGCGUCUACUGCGA	chr4:39460410-39460632(-)$1	222	100	121	15.4344
ucgaacuccuaacuucaagug	chr10:18934731-18934984(-)$1	253	61	82	15.4572
AGUGGUGUGUGUAGAAAGCCA	chr6:34555094-34555366(-)$1	272	165	186	17.4658
GACUUCAUUUUUCUGGCACAA	chr7:149292176-149292421(-)$1	245	211	232	16.4184
GAAUUCAAAUGUGGGAGGAAU	chr11:72414339-72414544(-)$1	205	45	66	16.8558
GCUGCCCGAUACUAUGAGGGU	chr19:33667905-33668141(+)$1	236	189	210	16.4066
AACCCCGACAUCAUUACCGGG	chrM:12060-12299(+)$1	239	47	68	14.3883

#DB
((.((((..........))))	chr19:45981798-45982021(-)$1	1	168	189	16.6296
(.(((............))).	chr20:37393626-37393910(+)$1	1	192	213	18.1098
(((((((..........))))	chr5:134259680-134259904(+)$1	1	196	217	16.3196
(.(((............))).	chr17:76758487-76758709(-)$1	1	70	91	17.8604
((((.((...........)).	chr14:58706552-58706787(-)$1	1	31	52	16.4022
((((.((..........))..	chr13:92000503-92000748(+)$1	1	169	190	15.3199
(.(((............))).	chr1:169076104-169076327(+)$1	1	7	28	17.6877
(.(((((..........))))	chr1:16993315-16993535(-)$1	1	112	133	16.9597
(((((((..........))))	chr1:90390387-90390644(+)$1	1	129	150	16.6685
(.(((((..........))))	chr1:17066912-17067140(+)$1	1	118	139	16.9597
(((((((..........))))	chr4:39459954-39460161(-)$1	1	182	203	16.1086
..((((((.........))))	chr10:128256276-128256488(-)$1	1	73	94	8.1870
(.(((((..........))))	chr1:16993335-16993541(-)$1	1	118	139	16.9597
..((((..............)	chr18:1691765-1691978(+)$1	1	179	200	17.1377
(.(((............))).	chr7:103029314-103029525(-)$1	1	171	192	17.9971
..((((...........))))	chrM:488-713(+)$1	1	22	43	16.3039
...((((..........))))	chrM:12107-12350(+)$1	1	0	21	14.3883
)((((((..............	chr11:618794-619008(-)$1	1	34	55	15.0895
(.(((((.............)	chrM:1162-1377(+)$1	1	18	39	15.2924
(.((((............)))	chr5:140090800-140091031(+)$1	1	148	169	18.1005
(((..............))))	chr5:135416087-135416329(-)$1	1	156	177	15.6544
((((.((..........))))	chr5:180692567-180692776(+)$1	1	132	153	15.8412
(((((((..........))))	chr1:90390444-90390734(+)$1	1	72	93	16.6685
.(((((...........))))	chr11:72414344-72414560(-)$1	1	61	82	16.8558
((..(((..........))).	chr14:50695235-50695439(-)$1	1	21	42	16.6974
(((((((..........))))	chr9:19380096-19380331(-)$1	1	84	105	16.1086
(((((((..........))))	chr3:45730391-45730627(-)$1	1	70	91	15.6858
(((((((..........))))	chr18:1691755-1691965(+)$1	1	165	186	16.1086
((..(((..........))).	chr14:50695239-50695456(-)$1	1	38	59	16.6974
....(((..........))).	chr10:18934784-18935039(-)$1	1	116	137	15.4572
..(((((.........)))))	chr2:27274018-27274235(+)$1	1	0	21	7.7527
((((.((..........))))	chr5:180692576-180692792(+)$1	1	123	144	15.8412
(.((((............)))	chr5:140090781-140090996(+)$1	1	167	188	18.1005
(.((((.(.............	chr9:140610685-140610934(+)$1	1	110	131	13.9165
(.(((((.............)	chrM:1177-1382(+)$1	1	3	24	15.2924
.((.(((..........))).	chr11:9481795-9482048(-)$1	1	21	42	16.5319
(.(((............))).	chr7:103029305-103029514(-)$1	1	160	181	17.9971
..((((...............	chr17:26919458-26919700(-)$1	1	26	47	13.1846
.((((((..........))))	chr4:39460410-39460632(-)$1	1	100	121	15.4344
....(((..........))).	chr10:18934731-18934984(-)$1	1	61	82	15.4572
((((((...........))))	chr6:34555094-34555366(-)$1	1	165	186	17.4658
(((((..............))	chr7:149292176-149292421(-)$1	1	211	232	16.4184
.(((((...........))))	chr11:72414339-72414544(-)$1	1	45	66	16.8558
.((((((..........))))	chr19:33667905-33668141(+)$1	1	189	210	16.4066
...((((..........))))	chrM:12060-12299(+)$1	1	47	68	14.3883

#PSSM
d : 0.22	f : 0.13	: : 0.13	g : 0.08	b : 0.06	h : 0.04	e : 0.04	# : 0.04	! : 0.04	$ : 0.04	[ : 0.04	c : 0.02	= : 0.02	H : 0.02	i : 0.02	
[ : 0.28	d : 0.15	g : 0.08	e : 0.08	: : 0.08	b : 0.06	! : 0.04	f : 0.04	$ : 0.04	= : 0.02	# : 0.02	H : 0.02	i : 0.02	
e : 0.24	d : 0.24	c : 0.11	g : 0.08	f : 0.06	: : 0.04	! : 0.04	$ : 0.04	b : 0.04	[ : 0.02	= : 0.02	i : 0.02	
d : 0.33	e : 0.22	c : 0.11	g : 0.08	f : 0.06	! : 0.04	$ : 0.04	= : 0.02	w : 0.02	[ : 0.02	i : 0.02	
d : 0.28	c : 0.22	e : 0.20	[ : 0.08	g : 0.06	f : 0.06	= : 0.02	w : 0.02	i : 0.02	
d : 0.28	e : 0.20	u : 0.11	c : 0.11	b : 0.08	g : 0.06	f : 0.06	w : 0.04	= : 0.02	
u : 0.15	e : 0.15	d : 0.13	c : 0.11	b : 0.08	t : 0.08	g : 0.06	f : 0.06	w : 0.06	= : 0.02	[ : 0.02	x : 0.02	
s : 0.51	u : 0.15	t : 0.11	w : 0.08	v : 0.04	f : 0.02	r : 0.02	a : 0.02	x : 0.02	
s : 0.51	u : 0.15	t : 0.11	w : 0.08	v : 0.06	r : 0.04	x : 0.02	
s : 0.51	u : 0.15	t : 0.11	w : 0.08	v : 0.06	r : 0.04	x : 0.02	
s : 0.51	u : 0.15	t : 0.11	w : 0.08	v : 0.06	r : 0.04	x : 0.02	
s : 0.51	u : 0.15	t : 0.11	w : 0.08	v : 0.06	r : 0.04	x : 0.02	
s : 0.51	u : 0.15	t : 0.11	w : 0.08	v : 0.06	r : 0.04	x : 0.02	
s : 0.51	u : 0.15	t : 0.11	w : 0.08	v : 0.06	r : 0.04	x : 0.02	
s : 0.51	u : 0.15	t : 0.11	w : 0.08	v : 0.06	r : 0.04	x : 0.02	
s : 0.51	u : 0.15	t : 0.11	w : 0.08	v : 0.06	r : 0.04	x : 0.02	
s : 0.51	u : 0.15	t : 0.11	w : 0.08	v : 0.06	r : 0.02	e : 0.02	x : 0.02	
c : 0.22	d : 0.17	e : 0.17	b : 0.06	g : 0.06	w : 0.06	v : 0.06	f : 0.04	u : 0.04	= : 0.02	t : 0.02	x : 0.02	
d : 0.22	c : 0.22	e : 0.17	b : 0.08	g : 0.06	w : 0.06	v : 0.06	f : 0.04	= : 0.02	x : 0.02	
d : 0.26	c : 0.22	e : 0.17	g : 0.06	v : 0.06	f : 0.04	w : 0.04	= : 0.02	b : 0.02	2 : 0.02	x : 0.02	i : 0.02	
d : 0.28	e : 0.22	] : 0.13	2 : 0.08	g : 0.06	f : 0.04	5 : 0.04	= : 0.02	w : 0.02	v : 0.02	x : 0.02	i : 0.02	

#score	717.3024814461554
#seq	45
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_CDS_m3_run2.txt

#BEAR
}DDDD}EEEEEYYBB}BBYYBBBBCCC}AEEEEEYY	chr1:9790526-9790789(-)$1	263	204	240	20.0234
::BB}FFFFFF}FFFFFF}AYYBBZZZFFFFFF:::	chr9:117063250-117063506(+)$1	256	157	193	17.8775
EEE}JJJJJJJJJJIIIIIIIII}EEEEE}DDDD::	chr21:46908232-46908457(+)$1	225	188	224	19.4417
JJCCCJJJJJJJJJJJZZZFFFFFFZZZEEEEEDDD	chr14:34931151-34931420(-)$1	269	225	261	19.9845
ccBBJJJJJJJJJJJJBB~~~~A}CCC}EEEEE:::	chr2:242757627-242757937(+)$1	310	273	309	23.4447
DDYYIIIIIIIII}DDDD}BBYYFFFFFF}AYYEEE	chr14:39736575-39736846(+)$1	271	181	217	22.9427
DDYYA}DDDDYYDDDDDDDDYYA}CCC}AZZZFFFF	chr8:144940431-144940704(-)$1	273	235	271	18.6299

#otherMatches

#Seq PSSM
ACUCCACCCUCAGCUACUGACCCGUGCCCCCGGCCA	chr1:9790526-9790789(-)$1	263	204	240	20.0234
AUGUGUGGGGAUUGGACAGGAAGACUCCGGGGUCCC	chr9:117063250-117063506(+)$1	256	157	193	17.8775
GGCUGGGGGAGACAGGGCCUUGCCUCGGGUUUUCUG	chr21:46908232-46908457(+)$1	225	188	224	19.4417
GCCGGUCCUGUGCGCGGAAGCCGGGGGUGCAGGGGG	chr14:34931151-34931420(-)$1	269	225	261	19.9845
CAGGUGCCUGGUGGGCCCUUCAGCCGUCUGCAGCCU	chr2:242757627-242757937(+)$1	310	273	309	23.4447
CCCAGGGGUCGCGGGAGCCGCCGGGGGAAGGAAGCA	chr14:39736575-39736846(+)$1	271	181	217	22.9427
AGAUCUCCCUCUUCCAGGCCAUGCAGAAGGACCUCA	chr8:144940431-144940704(-)$1	273	235	271	18.6299

#DB
.)))).)))))..)).))..))))))).))))))..	chr1:9790526-9790789(-)$1	1	204	240	20.0234
..)).)))))).)))))).)..))...))))))...	chr9:117063250-117063506(+)$1	1	157	193	17.8775
))).))))))))))))))))))).))))).))))..	chr21:46908232-46908457(+)$1	1	188	224	19.4417
))))))))))))))))...))))))...))))))))	chr14:34931151-34931420(-)$1	1	225	261	19.9845
))))))))))))))))))....).))).)))))...	chr2:242757627-242757937(+)$1	1	273	309	23.4447
))..))))))))).)))).))..)))))).)..)))	chr14:39736575-39736846(+)$1	1	181	217	22.9427
))..).))))..))))))))..).))).)...))))	chr8:144940431-144940704(-)$1	1	235	271	18.6299

#PSSM
D : 0.28	} : 0.14	: : 0.14	E : 0.14	J : 0.14	c : 0.14	
D : 0.42	: : 0.14	E : 0.14	J : 0.14	c : 0.14	
B : 0.28	Y : 0.28	D : 0.14	E : 0.14	C : 0.14	
B : 0.28	Y : 0.28	D : 0.14	} : 0.14	C : 0.14	
J : 0.28	D : 0.14	} : 0.14	C : 0.14	I : 0.14	A : 0.14	
J : 0.42	} : 0.28	F : 0.14	I : 0.14	
J : 0.42	E : 0.14	F : 0.14	I : 0.14	D : 0.14	
J : 0.42	E : 0.14	F : 0.14	I : 0.14	D : 0.14	
J : 0.42	E : 0.14	F : 0.14	I : 0.14	D : 0.14	
J : 0.42	E : 0.14	F : 0.14	I : 0.14	D : 0.14	
J : 0.42	E : 0.14	F : 0.14	I : 0.14	Y : 0.14	
J : 0.42	Y : 0.28	} : 0.14	I : 0.14	
J : 0.42	Y : 0.14	F : 0.14	I : 0.14	D : 0.14	
J : 0.42	B : 0.14	F : 0.14	} : 0.14	D : 0.14	
J : 0.28	D : 0.28	B : 0.14	F : 0.14	I : 0.14	
J : 0.28	D : 0.28	} : 0.14	F : 0.14	I : 0.14	
B : 0.28	D : 0.28	F : 0.14	I : 0.14	Z : 0.14	
B : 0.28	D : 0.28	F : 0.14	I : 0.14	Z : 0.14	
} : 0.28	Y : 0.14	I : 0.14	Z : 0.14	~ : 0.14	D : 0.14	
Y : 0.14	A : 0.14	I : 0.14	F : 0.14	~ : 0.14	B : 0.14	D : 0.14	
B : 0.28	Y : 0.28	I : 0.14	F : 0.14	~ : 0.14	
Y : 0.42	B : 0.14	I : 0.14	F : 0.14	~ : 0.14	
B : 0.28	A : 0.28	I : 0.14	F : 0.14	Y : 0.14	
} : 0.42	B : 0.28	F : 0.28	
C : 0.42	F : 0.28	Z : 0.14	E : 0.14	
C : 0.42	Z : 0.28	E : 0.14	F : 0.14	
C : 0.42	Z : 0.28	E : 0.14	F : 0.14	
} : 0.42	F : 0.28	E : 0.14	Z : 0.14	
E : 0.42	A : 0.28	F : 0.28	
E : 0.42	} : 0.28	F : 0.14	Z : 0.14	
E : 0.42	F : 0.14	D : 0.14	A : 0.14	Z : 0.14	
E : 0.42	F : 0.14	D : 0.14	Y : 0.14	Z : 0.14	
E : 0.42	F : 0.28	D : 0.14	Y : 0.14	
E : 0.28	: : 0.28	D : 0.28	F : 0.14	
: : 0.42	Y : 0.14	D : 0.14	E : 0.14	F : 0.14	
: : 0.42	Y : 0.14	D : 0.14	E : 0.14	F : 0.14	

#score	142.34485609507138
#seq	7
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_CDS_m1_run1.txt

#BEAR
!!dddduuuuuuuuuuuudddd]dd	chr1:90400064-90400349(+)$1	285	234	259	23.8748
c!!cccuuuuuuuuuuuuccc22cc	chr22:42263015-42263285(+)$1	270	179	204	23.7588
ffffffvvvvvvvvvvvvvffffff	chr10:7773786-7774016(+)$1	230	197	222	22.6617
gggggguuuuuuuuuuuuggggggg	chr8:117658607-117658861(-)$1	254	82	107	24.1802
%ddddvvvvvvvvvvvvvdddd444	chr1:116946959-116947201(+)$1	242	155	180	21.7940
iii[bbtttttttttttbb]iiiii	chr9:96291620-96291931(+)$1	311	267	292	22.3581
hhhh[attttttttttta]hhhhhh	chr2:21231141-21231383(-)$1	242	191	216	21.6568
[cccwwwwwwwwwwwwwwccc]a]f	chr1:115260588-115260912(-)$1	324	114	139	21.7289
e[dddduuuuuuuuuuuudddd]ee	chr2:216229598-216229808(-)$1	210	112	137	23.9604
ddd[bbuuuuuuuuuuuubbdddd]	chr16:28846918-28847162(+)$1	244	96	121	22.8170
iiiiiyyyyyyyyyyyyyyyyiiii	chrM:6428-6700(+)$1	272	201	226	21.5053
fff[bbtttttttttttbb]fffff	chr11:320577-320850(-)$1	273	134	159	21.7999
gggggggtttttttttttggggggg	chr22:41545994-41546302(+)$1	308	79	104	22.6790
gggggguuuuuuuuuuuuggggggg	chr19:15354121-15354399(-)$1	278	87	112	24.1802
ddddbbvvvvvvvvvvvvvbb]ddd	chr2:21236013-21236235(-)$1	222	180	205	21.8427
gggggguuuuuuuuuuuuggggggg	chr4:187530277-187530518(-)$1	241	145	170	24.1802
[eeeeevvvvvvvvvvvvveeeee2	chr6:64286681-64286945(+)$1	264	187	212	23.1890
"eeeeettttttttttteeeeehhh	chr4:74283704-74283926(+)$1	222	52	77	22.2379
d[ddddtttttttttttdddddddd	chr22:29191102-29191385(-)$1	283	73	98	22.2289
ee[ddddtttttttttttddddeee	chr13:45914178-45914419(-)$1	241	78	103	22.3164
fffffauuuuuuuuuuuua]fffff	chr4:187630186-187630422(-)$1	236	176	201	23.5357
!eeeeevvvvvvvvvvvvveeeeef	chr2:21228132-21228350(-)$1	218	18	43	23.4014
ffffffuuuuuuuuuuuuffffff]	chr2:21225099-21225304(-)$1	205	40	65	23.2674
======uuuuuuuuuuuu=======	chr18:47016782-47017023(-)$1	241	70	95	24.1435
d[ddddvvvvvvvvvvvvvdddd]d	chr2:242187369-242187605(-)$1	236	120	145	23.0157
::ddddwwwwwwwwwwwwwwdddd:	chr16:72828884-72829138(-)$1	254	46	71	18.7301
###cccuuuuuuuuuuuuccccccb	chr12:53860903-53861139(+)$1	236	130	155	23.4731
ffffffyyyyyyyyyyyyyyyyfff	chrM:8354-8603(+)$1	249	33	58	20.6278
ffffffvvvvvvvvvvvvvffffff	chr19:36640856-36641137(+)$1	281	111	136	22.6617
c[eeeeettttttttttteeeee]c	chr17:64225333-64225549(-)$1	216	168	193	22.6502
ee!!bbuuuuuuuuuuuubbeeeee	chr16:28846400-28846607(+)$1	207	170	195	23.2598
ccc[bbuuuuuuuuuuuubb333cc	chr14:94845830-94846044(-)$1	214	36	61	23.1155
gggggguuuuuuuuuuuuggggggg	chr8:145066534-145066787(+)$1	253	144	169	24.1802
e[dddduuuuuuuuuuuuddddeee	chr7:100849470-100849721(-)$1	251	82	107	23.8987
!eeeeeuuuuuuuuuuuueeeeebb	chr12:9227137-9227364(-)$1	227	29	54	23.3479
ffffffuuuuuuuuuuuuffffff:	chr8:101718814-101719050(-)$1	236	78	103	22.2430
hhhhwwwwwwwwwwwwwwhhhhhhh	chr4:187629220-187629478(-)$1	258	5	30	19.9203
[fffffftttttttttttffffff]	chr17:60060170-60060475(-)$1	305	43	68	22.1189
c[ddddwwwwwwwwwwwwwwddddc	chr22:41573883-41574187(+)$1	304	218	243	21.9384
c[ddddtttttttttttdddd333c	chr19:49469739-49469947(+)$1	208	166	191	22.7110
ffffffuuuuuuuuuuuuffffff:	chr3:12880880-12881108(-)$1	228	41	66	22.2430
[adddduuuuuuuuuuuudddd]a]	chr14:94847142-94847359(-)$1	217	54	79	23.8889
ggggggwwwwwwwwwwwwwwggggg	chr2:21224519-21224766(-)$1	247	172	197	22.3561
c[ddddtttttttttttdddd]ccc	chr16:72822490-72822774(-)$1	284	24	49	22.7335
::dddduuuuuuuuuuuuddddFFF	chr11:8008908-8009189(+)$1	281	29	54	20.4884
:eeeeewwwwwwwwwwwwwweeeee	chr12:9231739-9231941(-)$1	202	122	147	21.0496
ddyyyyyyyyyyyyyyyydddd]ee	chr14:94847130-94847335(-)$1	205	148	173	20.1870
"eeeeettttttttttteeeee]hh	chr2:21229745-21229992(-)$1	247	31	56	22.4532
eeddddvvvvvvvvvvvvvdddd]e	chr17:64224183-64224414(-)$1	231	59	84	23.0020
gggggggtttttttttttggggggg	chrX:71492980-71493197(-)$1	217	128	153	22.6790
c[cccbbtttttttttttbb]ccc]	chr20:43133340-43133585(-)$1	245	118	143	22.1395
eeeeewwwwwwwwwwwwwweeeeee	chr2:21228936-21229160(-)$1	224	25	50	22.0519
fffffftttttttttttffffff33	chr7:139305069-139305330(-)$1	261	11	36	21.8954
!!bb[attttttttttta]bb22ff	chr15:66792528-66792733(-)$1	205	67	92	21.9725
[cccwwwwwwwwwwwwwwccceeee	chr6:24706294-24706565(-)$1	271	131	156	21.8585
hhhhwwwwwwwwwwwwwwhhhhhhh	chr3:52561256-52561492(-)$1	236	104	129	19.9203
!eeeeevvvvvvvvvvvvveeeeef	chr2:21228252-21228505(-)$1	253	173	198	23.4014
###ccctttttttttttccc333ff	chr6:149699744-149700025(+)$1	281	14	39	22.6266
gggggggtttttttttttggggggg	chr12:110783731-110784023(+)$1	292	128	153	22.6790
d!!cccyyyyyyyyyyyyyyyyccc	chr10:7773686-7773912(+)$1	226	47	72	21.0267
eeeeeyyyyyyyyyyyyyyyyeeee	chr16:75276386-75276699(-)$1	313	145	170	21.2975

#otherMatches

#Seq PSSM
UUGCUCAAAAACCUUCGAGAGUUGU	chr1:90400064-90400349(+)$1	285	234	259	23.8748
UAAUGAUCACGCCAACAUUCAGCAC	chr22:42263015-42263285(+)$1	270	179	204	23.7588
UAUCUACUAACUGACCCCCUAGAUA	chr10:7773786-7774016(+)$1	230	197	222	22.6617
GAGGAGGACCUGUCCAAACUCUUCA	chr8:117658607-117658861(-)$1	254	82	107	24.1802
GACACCCACCCCCUCUUUGUGUACU	chr1:116946959-116947201(+)$1	242	155	180	21.7940
GCUUCUGUUAUUUGAUGAGUGGCCA	chr9:96291620-96291931(+)$1	311	267	292	22.3581
AUUGAGGGAAAAUCAAACACAGUGG	chr2:21231141-21231383(-)$1	242	191	216	21.6568
AUUGACUAACCACAUCCACAAAGCA	chr1:115260588-115260912(-)$1	324	114	139	21.7289
GUUAUGAUGAUGGGAAGACAUACCA	chr2:216229598-216229808(-)$1	210	112	137	23.9604
CUGUGUAUGCCAUCCACCACCAGCA	chr16:28846918-28847162(+)$1	244	96	121	22.8170
AGUUUAUAUUCUUAUCCUACCAGGC	chrM:6428-6700(+)$1	272	201	226	21.5053
GGGCGCCCCACAACCCUGCUCCCCC	chr11:320577-320850(-)$1	273	134	159	21.7999
GUGCAGCCUUCACUUCCUGCUGCAC	chr22:41545994-41546302(+)$1	308	79	104	22.6790
UUGUGUUCUUCCAGCUUUGCACAAC	chr19:15354121-15354399(-)$1	278	87	112	24.1802
ACCUGCUUUCCUACAAUGUGCAAGG	chr2:21236013-21236235(-)$1	222	180	205	21.8427
AGAAGUCAAAGUGACCAAACUUCUC	chr4:187530277-187530518(-)$1	241	145	170	24.1802
GACCUUAAACAAAUUUAUAGAGGUA	chr6:64286681-64286945(+)$1	264	187	212	23.1890
UUUCAGCUUCACCUCUUUUGAAUUU	chr4:74283704-74283926(+)$1	222	52	77	22.2379
CCAUCUUCCUGCCUACUGGAUGCUU	chr22:29191102-29191385(-)$1	283	73	98	22.2289
AUACUGCUUUUUCUUAAUGCAGAUG	chr13:45914178-45914419(-)$1	241	78	103	22.3164
CACAUCGAACAGGCCAAUGAAUGUG	chr4:187630186-187630422(-)$1	236	176	201	23.5357
CAGAAGACUCCUUGAUUCCCUUUUU	chr2:21228132-21228350(-)$1	218	18	43	23.4014
GUUUUUAAAUUGUUGAAAGAAAACC	chr2:21225099-21225304(-)$1	205	40	65	23.2674
AAAAUGACUCAUCAUCUCCAUUUUC	chr18:47016782-47017023(-)$1	241	70	95	24.1435
AGCUCAGAGGACCUAAGAAUGAGGU	chr2:242187369-242187605(-)$1	236	120	145	23.0157
UCGAGCCCCAGUCCUUCCCAGCUCU	chr16:72828884-72829138(-)$1	254	46	71	18.7301
ACAGUCUCAUUUUCCCAUGACGCAU	chr12:53860903-53861139(+)$1	236	130	155	23.4731
GUAUGGCCCACCAUAAUUACCCCCA	chrM:8354-8603(+)$1	249	33	58	20.6278
GGGUCUCCCCAUUCCCACCAGGCCC	chr19:36640856-36641137(+)$1	281	111	136	22.6617
UAUGUCAGGGAUCAAUAAUGAUAAG	chr17:64225333-64225549(-)$1	216	168	193	22.6502
CACUGGUUCUCCCUCUUUCCUGCUG	chr16:28846400-28846607(+)$1	207	170	195	23.2598
GGUCCCAGAAGAACAAGAGGAAUGC	chr14:94845830-94846044(-)$1	214	36	61	23.1155
UGGUGGUGCUCUUCAUCUUCGCCAU	chr8:145066534-145066787(+)$1	253	144	169	24.1802
CGCCUCACCCACUACCACGAGGGGC	chr7:100849470-100849721(-)$1	251	82	107	23.8987
GUGGGGCAUUUUUACGAACCCCAGG	chr12:9227137-9227364(-)$1	227	29	54	23.3479
UGCUGUCCGCACCGUUCCACAGUAU	chr8:101718814-101719050(-)$1	236	78	103	22.2430
AAAUUUAAAUCAUGUGCCGUUUGCG	chr4:187629220-187629478(-)$1	258	5	30	19.9203
CCUCAAACUCAUACUUCUUUUGGGA	chr17:60060170-60060475(-)$1	305	43	68	22.1189
CAUGCAGAACAUGAAUCCAAUGCAG	chr22:41573883-41574187(+)$1	304	218	243	21.9384
CACCUGACCAACCUCCACAGGCUGG	chr19:49469739-49469947(+)$1	208	166	191	22.7110
GCACAGACGCUAACCCACCUGUGUA	chr3:12880880-12881108(-)$1	228	41	66	22.2430
GCCAUCUUCUUCCUGCCUGAUGAGG	chr14:94847142-94847359(-)$1	217	54	79	23.8889
AAAGAAAUCUUCAUUUAUUCUUCUU	chr2:21224519-21224766(-)$1	247	172	197	22.3561
CAGCUUUAACGUCUCCUAAGCCGAA	chr16:72822490-72822774(-)$1	284	24	49	22.7335
CACGccaaccccagucccggcggcg	chr11:8008908-8009189(+)$1	281	29	54	20.4884
ugagcuucuuuuugugugccagcuc	chr12:9231739-9231941(-)$1	202	122	147	21.0496
UGACCAAGAAGCUGCCCACACCUCU	chr14:94847130-94847335(-)$1	205	148	173	20.1870
UGUCUCCAUUCACCAUAGAGAUGUC	chr2:21229745-21229992(-)$1	247	31	56	22.4532
AAUAGAGAUUUGUUAACCAUCUGCU	chr17:64224183-64224414(-)$1	231	59	84	23.0020
UUUCCUUCUCUCUAGUCUGAGGAAA	chrX:71492980-71493197(-)$1	217	128	153	22.6790
CUGGUCAGCCAUGUCCAAUGAACCU	chr20:43133340-43133585(-)$1	245	118	143	22.1395
UUCCAAAAUUGAUGAUAUCUGGAAC	chr2:21228936-21229160(-)$1	224	25	50	22.0519
GCAUGAACAGCGUCAAAUCAUGUUU	chr7:139305069-139305330(-)$1	261	11	36	21.8954
AAGCCCAGAGAUCCAAAGAGCCCUU	chr15:66792528-66792733(-)$1	205	67	92	21.9725
ACAGGAACAGCUCACCCACUGGGCA	chr6:24706294-24706565(-)$1	271	131	156	21.8585
UUUCAGAAAACUCGAUGAGAAGGGC	chr3:52561256-52561492(-)$1	236	104	129	19.9203
CAGAAGACUCCUUGAUUCCCUUUUU	chr2:21228252-21228505(-)$1	253	173	198	23.4014
AUCUCAGUUUAAUCCCAUGAACCCU	chr6:149699744-149700025(+)$1	281	14	39	22.6266
CGUGGGCUCCAUCUGCCUGUCCAUG	chr12:110783731-110784023(+)$1	292	128	153	22.6790
GUAGGAACAUAAUUUCUCUCUCUCU	chr10:7773686-7773912(+)$1	226	47	72	21.0267
GAAGCAGACACCCCAUCACCCGUUU	chr16:75276386-75276699(-)$1	313	145	170	21.2975

#DB
..((((............)))).))	chr1:90400064-90400349(+)$1	1	234	259	23.8748
(..(((............)))..))	chr22:42263015-42263285(+)$1	1	179	204	23.7588
((((((.............))))))	chr10:7773786-7774016(+)$1	1	197	222	22.6617
((((((............)))))))	chr8:117658607-117658861(-)$1	1	82	107	24.1802
.((((.............))))...	chr1:116946959-116947201(+)$1	1	155	180	21.7940
(((.((...........)).)))))	chr9:96291620-96291931(+)$1	1	267	292	22.3581
((((.(...........).))))))	chr2:21231141-21231383(-)$1	1	191	216	21.6568
.(((..............))).).)	chr1:115260588-115260912(-)$1	1	114	139	21.7289
(.((((............)))).))	chr2:216229598-216229808(-)$1	1	112	137	23.9604
(((.((............)))))).	chr16:28846918-28847162(+)$1	1	96	121	22.8170
(((((................))))	chrM:6428-6700(+)$1	1	201	226	21.5053
(((.((...........)).)))))	chr11:320577-320850(-)$1	1	134	159	21.7999
(((((((...........)))))))	chr22:41545994-41546302(+)$1	1	79	104	22.6790
((((((............)))))))	chr19:15354121-15354399(-)$1	1	87	112	24.1802
((((((.............)).)))	chr2:21236013-21236235(-)$1	1	180	205	21.8427
((((((............)))))))	chr4:187530277-187530518(-)$1	1	145	170	24.1802
.(((((.............))))).	chr6:64286681-64286945(+)$1	1	187	212	23.1890
.(((((...........))))))))	chr4:74283704-74283926(+)$1	1	52	77	22.2379
(.((((...........))))))))	chr22:29191102-29191385(-)$1	1	73	98	22.2289
((.((((...........)))))))	chr13:45914178-45914419(-)$1	1	78	103	22.3164
((((((............).)))))	chr4:187630186-187630422(-)$1	1	176	201	23.5357
.(((((.............))))))	chr2:21228132-21228350(-)$1	1	18	43	23.4014
((((((............)))))).	chr2:21225099-21225304(-)$1	1	40	65	23.2674
((((((............)))))))	chr18:47016782-47017023(-)$1	1	70	95	24.1435
(.((((.............)))).)	chr2:242187369-242187605(-)$1	1	120	145	23.0157
..((((..............)))).	chr16:72828884-72829138(-)$1	1	46	71	18.7301
...(((............)))))))	chr12:53860903-53861139(+)$1	1	130	155	23.4731
((((((................)))	chrM:8354-8603(+)$1	1	33	58	20.6278
((((((.............))))))	chr19:36640856-36641137(+)$1	1	111	136	22.6617
(.(((((...........))))).)	chr17:64225333-64225549(-)$1	1	168	193	22.6502
((..((............)))))))	chr16:28846400-28846607(+)$1	1	170	195	23.2598
(((.((............))...))	chr14:94845830-94846044(-)$1	1	36	61	23.1155
((((((............)))))))	chr8:145066534-145066787(+)$1	1	144	169	24.1802
(.((((............)))))))	chr7:100849470-100849721(-)$1	1	82	107	23.8987
.(((((............)))))))	chr12:9227137-9227364(-)$1	1	29	54	23.3479
((((((............)))))).	chr8:101718814-101719050(-)$1	1	78	103	22.2430
((((..............)))))))	chr4:187629220-187629478(-)$1	1	5	30	19.9203
.((((((...........)))))).	chr17:60060170-60060475(-)$1	1	43	68	22.1189
(.((((..............)))))	chr22:41573883-41574187(+)$1	1	218	243	21.9384
(.((((...........))))...)	chr19:49469739-49469947(+)$1	1	166	191	22.7110
((((((............)))))).	chr3:12880880-12881108(-)$1	1	41	66	22.2430
.(((((............)))).).	chr14:94847142-94847359(-)$1	1	54	79	23.8889
((((((..............)))))	chr2:21224519-21224766(-)$1	1	172	197	22.3561
(.((((...........)))).)))	chr16:72822490-72822774(-)$1	1	24	49	22.7335
..((((............))))(((	chr11:8008908-8009189(+)$1	1	29	54	20.4884
.(((((..............)))))	chr12:9231739-9231941(-)$1	1	122	147	21.0496
((................)))).))	chr14:94847130-94847335(-)$1	1	148	173	20.1870
.(((((...........))))).))	chr2:21229745-21229992(-)$1	1	31	56	22.4532
((((((.............)))).)	chr17:64224183-64224414(-)$1	1	59	84	23.0020
(((((((...........)))))))	chrX:71492980-71493197(-)$1	1	128	153	22.6790
(.(((((...........)).))).	chr20:43133340-43133585(-)$1	1	118	143	22.1395
(((((..............))))))	chr2:21228936-21229160(-)$1	1	25	50	22.0519
((((((...........))))))..	chr7:139305069-139305330(-)$1	1	11	36	21.8954
..((.(...........).))..))	chr15:66792528-66792733(-)$1	1	67	92	21.9725
.(((..............)))))))	chr6:24706294-24706565(-)$1	1	131	156	21.8585
((((..............)))))))	chr3:52561256-52561492(-)$1	1	104	129	19.9203
.(((((.............))))))	chr2:21228252-21228505(-)$1	1	173	198	23.4014
...(((...........)))...))	chr6:149699744-149700025(+)$1	1	14	39	22.6266
(((((((...........)))))))	chr12:110783731-110784023(+)$1	1	128	153	22.6790
(..(((................)))	chr10:7773686-7773912(+)$1	1	47	72	21.0267
(((((................))))	chr16:75276386-75276699(-)$1	1	145	170	21.2975

#PSSM
f : 0.14	g : 0.13	c : 0.11	e : 0.11	d : 0.09	! : 0.08	[ : 0.08	h : 0.04	: : 0.04	i : 0.03	" : 0.03	# : 0.03	% : 0.01	= : 0.01	
e : 0.19	f : 0.16	[ : 0.14	g : 0.13	! : 0.06	d : 0.06	h : 0.04	c : 0.04	i : 0.03	: : 0.03	# : 0.03	= : 0.01	a : 0.01	
d : 0.24	f : 0.16	e : 0.16	g : 0.13	c : 0.06	! : 0.04	h : 0.04	i : 0.03	# : 0.03	[ : 0.01	= : 0.01	y : 0.01	b : 0.01	
d : 0.24	e : 0.16	f : 0.14	g : 0.13	c : 0.11	[ : 0.06	h : 0.04	i : 0.01	= : 0.01	! : 0.01	y : 0.01	b : 0.01	
d : 0.22	e : 0.16	f : 0.14	g : 0.13	b : 0.09	c : 0.08	w : 0.06	[ : 0.03	i : 0.01	= : 0.01	y : 0.01	
d : 0.21	f : 0.13	g : 0.13	e : 0.13	b : 0.11	w : 0.08	c : 0.06	a : 0.04	y : 0.04	v : 0.01	= : 0.01	
u : 0.32	t : 0.18	v : 0.14	w : 0.14	y : 0.08	g : 0.04	d : 0.01	e : 0.01	f : 0.01	b : 0.01	
u : 0.32	t : 0.29	v : 0.14	w : 0.14	y : 0.08	
u : 0.32	t : 0.29	v : 0.14	w : 0.14	y : 0.08	
u : 0.32	t : 0.29	v : 0.14	w : 0.14	y : 0.08	
u : 0.32	t : 0.29	v : 0.14	w : 0.14	y : 0.08	
u : 0.32	t : 0.29	v : 0.14	w : 0.14	y : 0.08	
u : 0.32	t : 0.29	v : 0.14	w : 0.14	y : 0.08	
u : 0.32	t : 0.29	v : 0.14	w : 0.14	y : 0.08	
u : 0.32	t : 0.29	v : 0.14	w : 0.14	y : 0.08	
u : 0.32	t : 0.29	v : 0.14	w : 0.14	y : 0.08	
u : 0.32	t : 0.29	v : 0.14	w : 0.14	y : 0.08	
u : 0.32	v : 0.14	w : 0.14	t : 0.11	y : 0.08	d : 0.04	b : 0.03	a : 0.03	e : 0.03	f : 0.01	c : 0.01	
d : 0.18	v : 0.13	g : 0.11	b : 0.09	c : 0.08	f : 0.08	w : 0.08	y : 0.06	e : 0.06	] : 0.03	h : 0.03	a : 0.01	= : 0.01	
d : 0.21	e : 0.13	f : 0.11	g : 0.11	b : 0.09	c : 0.08	y : 0.06	w : 0.06	] : 0.04	h : 0.04	= : 0.01	
d : 0.26	e : 0.16	f : 0.14	g : 0.13	c : 0.06	y : 0.06	h : 0.04	b : 0.03	3 : 0.03	i : 0.01	= : 0.01	] : 0.01	
d : 0.22	e : 0.19	f : 0.14	g : 0.13	h : 0.04	] : 0.04	3 : 0.04	2 : 0.03	i : 0.03	c : 0.03	y : 0.03	= : 0.01	
e : 0.19	f : 0.16	g : 0.13	d : 0.11	] : 0.08	h : 0.06	c : 0.06	3 : 0.04	2 : 0.03	i : 0.03	4 : 0.01	a : 0.01	= : 0.01	F : 0.01	
e : 0.19	f : 0.18	g : 0.13	d : 0.09	c : 0.09	h : 0.08	] : 0.06	i : 0.03	3 : 0.03	4 : 0.01	= : 0.01	b : 0.01	a : 0.01	F : 0.01	
f : 0.16	e : 0.16	g : 0.13	c : 0.11	h : 0.08	] : 0.08	d : 0.06	: : 0.04	i : 0.03	b : 0.03	4 : 0.01	2 : 0.01	= : 0.01	F : 0.01	3 : 0.01	

#score	1369.1436306852513
#seq	61
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_transcript_m3_run1.txt

#BEAR
a[ccc[dddd[bb[bbqqqqqqqqbb]bb]dddd	chr17:7013454-7013712(-)$1	258	39	73	15.1918
[ffffff!!bb[cccqqqqqqqqccc]bb]ffff	chr1:110167368-110167608(+)$1	240	46	80	14.5274
$$cccffffff[ddddqqqqqqqqdddd22ffff	chr11:71936576-71936846(+)$1	270	96	130	17.8370
fccc:ccc[gggggggqqqqqqqqgggggggccc	chr11:432471-432767(-)$1	296	55	89	16.6734
bb"""ggggggg[cccqqqqqqqqccc]gggggg	chr6:155113925-155114202(+)$1	277	105	139	18.3568
fff[a"""ddddddddqqqqqqqqdddd333ddd	chr19:1068710-1068968(+)$1	258	204	238	19.3648
FFFFFFeeeee[ddddqqqqqqqqdddd]eeeee	chr14:24616191-24616473(+)$1	282	230	264	15.1510
===ccc!!cccddddrrrrrrrrrdddd]ccc22	chr12:132195656-132195916(+)$1	260	181	215	13.2192
ggggggg####ddddrrrrrrrrrddddgggggg	chr12:123465304-123465582(+)$1	278	185	219	12.7328
ee[ccc[dddd[ddddqqqqqqqqdddd333ddd	chr9:123237707-123237998(-)$1	291	230	264	19.4766
eedddd[bb[ccc!!aqqqqqqqqa22ccc]bb]	chr6:76311596-76311848(+)$1	252	136	170	15.7546
444a]bbccc!!ddddqqqqqqqqdddd22ccc:	chr19:56166245-56166485(+)$1	240	110	144	17.7177
eeeee[ccc"""ddddqqqqqqqqdddd333ccc	chr1:155898992-155899267(-)$1	275	184	218	20.0409
============ddddqqqqqqqqdddd4444==	chr15:25328459-25328747(+)$1	288	108	142	20.1957
hheeeee[bb"""cccqqqqqqqqccc4444bb]	chr6:44041464-44041726(-)$1	262	15	49	17.8773
fffffa[bb"""ddddqqqqqqqqdddd333bb]	chr19:55751353-55751583(-)$1	230	99	133	19.2436
$$$$$bb!!gggggggqqqqqqqqggggggg333	chr9:136553515-136553782(-)$1	267	199	233	16.8530
cc$$$$$ffffffcccqqqqqqqqccc333ffff	chr20:62698653-62698961(+)$1	308	143	177	17.5285
dd$$$$$dddd[ddddqqqqqqqqdddd22dddd	chr16:50656803-50657043(+)$1	240	193	227	18.0519
iiiiiiii[dddd[bbqqqqqqqqbbdddd]iii	chr17:74083958-74084226(-)$1	268	147	181	17.1346
dddd[eeeee!!ddddqqqqqqqqdddd22eeee	chr16:22019348-22019659(+)$1	311	271	305	18.4773
ddd$$$$$ccc[ddddqqqqqqqqdddd]ccc66	chr10:103114022-103114344(+)$1	322	27	61	18.0607
iieeeee!!bb!!cccqqqqqqqqccc333bb22	chr15:63335330-63335623(+)$1	293	78	112	18.5427
hhhhhhhh####ddddqqqqqqqqdddd22hhhh	chr11:1595026-1595296(+)$1	270	173	207	17.2974
b[eeeee!!gggggggqqqqqqqqgggggggeee	chr7:55247053-55247413(+)$1	360	280	314	16.9409
ggg!!a[eeeee[cccqqqqqqqqccc]eeeee]	chr16:718194-718443(+)$1	249	168	202	18.0640
==========bb!!bbqqqqqqqqbb22bb]===	chr7:44646207-44646580(+)$1	373	261	295	16.7819
ddd!!a[cccbb[cccqqqqqqqqccc]bb22cc	chr14:23790730-23790937(+)$1	207	92	126	17.5718
ffffffdddd"""cccqqqqqqqqccc333dddd	chr13:113762043-113762308(+)$1	265	137	171	18.0699
333ccccccdddd[cccqqqqqqqqccc]dddd]	chr2:177146370-177146700(+)$1	330	207	241	15.0468
""ggggggg!!eeeeeqqqqqqqqeeeee22ggg	chr8:144778220-144778572(+)$1	352	266	300	17.5245
ddcccggggggg[cccqqqqqqqqccc22ggggg	chr11:93474233-93474527(-)$1	294	170	204	18.6138
ddd!!bba!!ffffffqqqqqqqqffffff22a]	chr1:1368257-1368536(-)$1	279	176	210	16.0794
ddd!!ffffff!!cccqqqqqqqqccc22fffff	chr14:103564223-103564535(+)$1	312	52	86	17.8243
ff]ccc:ccc!!ddddqqqqqqqqdddd22ccc:	chr17:45773336-45773568(+)$1	232	135	169	17.7475
#eeeee"""ccc!!bbqqqqqqqqbb333ccc55	chr7:100137197-100137440(+)$1	243	61	95	16.3618
eee!!ccc[ccc[cccqqqqqqqqccc]ccc]cc	chr1:90309647-90309888(+)$1	241	65	99	18.5737
ddddbba!!bb[ddddqqqqqqqqdddd]bb22a	chr3:126710964-126711227(+)$1	263	58	92	17.4919
c!!==========[bbqqqqqqqqbb]=======	chr6:43745854-43746079(+)$1	225	116	150	18.3381
dd####==========ssssssssss========	chr11:66512688-66513005(+)$1	317	4	38	12.0024
fff:bb[ccc[eeeeeqqqqqqqqeeeee]ccc]	chr17:3504504-3504883(-)$1	379	228	262	16.6032
bb[a[===========qqqqqqqq==========	chr1:82268388-82268656(+)$1	268	221	255	18.5355
bb!!eeeee[ffffffqqqqqqqqffffff333e	chr12:112757306-112757615(-)$1	309	54	88	15.7168
geeeee!!ccc[ddddqqqqqqqqdddd22ccce	chr16:30934902-30935151(+)$1	249	67	101	19.7926
fff[a"""ccc[ddddqqqqqqqqdddd]ccca]	chr17:75488622-75488851(+)$1	229	163	197	20.0587
gg!!a[ccc!!eeeeeqqqqqqqqeeeeeccc22	chr16:30538422-30538665(-)$1	243	86	120	17.7912
[dddd!!dddd[a[cccqqqqqqqqccc]a]ddd	chr19:17320537-17320838(+)$1	301	124	158	15.7485
hhhccc[ccc[eeeeeqqqqqqqqeeeee]ccc]	chr1:205718905-205719121(-)$1	216	156	190	17.5652

#otherMatches

#Seq PSSM
UGGAGCGCUUCUGGAUGGAGAGGAAUGCAAAGGC	chr17:7013454-7013712(-)$1	258	39	73	15.1918
UGCCCCUUUGAGUGGAGAAUCUGCUAGUCCAGGG	chr1:110167368-110167608(+)$1	240	46	80	14.5274
GGGUUCUGCCUGGCCGUGUAUGGGUGGUGGGGGC	chr11:71936576-71936846(+)$1	270	96	130	17.8370
GUGGAGGGCACCCGUGAAGAGAGCUAUGGGUCUU	chr11:432471-432767(-)$1	296	55	89	16.6734
GGAUAUGGCAGCCGGGAUUCCGCCUCCAGUUGUC	chr6:155113925-155114202(+)$1	277	105	139	18.3568
GGGGGAGUCCCUGAGCGUACACUGGCUCAAGAGG	chr19:1068710-1068968(+)$1	258	204	238	19.3648
CUGGUCCAGCUAGAAAAAGAAAGGUUUUGAGCUG	chr14:24616191-24616473(+)$1	282	230	264	15.1510
GGGCCAGGCGGUGCCGGCGGUGGGGGCAGCCGAG	chr12:132195656-132195916(+)$1	260	181	215	13.2192
GGGGACUGGAGUCGGCGGAGAAAACCGGGGUCCC	chr12:123465304-123465582(+)$1	278	185	219	12.7328
CAGGUUGAUUCUGGGUACUGAGAGGCCUUGUGGG	chr9:123237707-123237998(-)$1	291	230	264	19.4766
GCGGCGGCUGCAGAACGAGCUAGGGGCCUGGGGG	chr6:76311596-76311848(+)$1	252	136	170	15.7546
AAGCGCCGGCGGCGGCCGGAAGUAGCCGAAGCCA	chr19:56166245-56166485(+)$1	240	110	144	17.7177
CGUAUUCUCUUAUCUUGUUUAUGGAAGGGUUGGG	chr1:155898992-155899267(-)$1	275	184	218	20.0409
UAUCUUCGAGGGACAAUCUUCUUCUUGUGCGAUC	chr15:25328459-25328747(+)$1	288	108	142	20.1957
GUAAGAGAUGAAAAGAGGAGUUAGUCUGCAGUAC	chr6:44041464-44041726(-)$1	262	15	49	17.8773
AGGUGUGCGGGAGGCCCUCGGAAAGGCUACAUGG	chr19:55751353-55751583(-)$1	230	99	133	19.2436
AGGGAGUGAUGAGCUGAGUCCAUGCGGCUCACGG	chr9:136553515-136553782(-)$1	267	199	233	16.8530
AGAGGGGCAGCCCCCUGCCAGGGAAGGGAAgggc	chr20:62698653-62698961(+)$1	308	143	177	17.5285
cagagggagcugcaggagcaaaggccuggaggcu	chr16:50656803-50657043(+)$1	240	193	227	18.0519
GGCCAGGCAGAGUACUGGUGGAAGGGACUCAGCC	chr17:74083958-74084226(-)$1	268	147	181	17.1346
GAGAUGGAUAAACUGACCAUCAUCUCAGGAUGUC	chr16:22019348-22019659(+)$1	311	271	305	18.4773
GCCGCCCGCCCACUGCGGGACCGGGCAGCGGGAC	chr10:103114022-103114344(+)$1	322	27	61	18.0607
GACUGGGAAUCAGUUUGGGGGAGGGAGGAGGACA	chr15:63335330-63335623(+)$1	293	78	112	18.5427
AGGUCCUUGAGGAGGCAGUCACAGGCCUGAAAGG	chr11:1595026-1595296(+)$1	270	173	207	17.2974
CGUGUGAGCAUAUUUGUAUUUUAGUAAAUAUUUA	chr7:55247053-55247413(+)$1	360	280	314	16.9409
GAAGACGUCGCUGAUCCUGUCCCUGGUGGGCGAG	chr16:718194-718443(+)$1	249	168	202	18.0640
GGCCUGCCCGGCGGGCGGAGAUUGGCGGGUACGG	chr7:44646207-44646580(+)$1	373	261	295	16.7819
GGCCUGGAGUCUGAGGAACUGGAGCCUGAGGAGC	chr14:23790730-23790937(+)$1	207	92	126	17.5718
GGGGCGUGGGUGUUCCGGAGGCGAGGGUAUCCCA	chr13:113762043-113762308(+)$1	265	137	171	18.0699
AAGCUAGUGAUGCCUGCUCGAACAUGCAUGCAUA	chr2:177146370-177146700(+)$1	330	207	241	15.0468
AAUCCUCACUCagaugcauuuggacgucuuugug	chr8:144778220-144778572(+)$1	352	266	300	17.5245
GAUCACGGCCGCAGGCCACUCCGCGCCACGCGGC	chr11:93474233-93474527(-)$1	294	170	204	18.6138
CCUGAGCCCACCCCACAACAGUAAGUGGGGCAGA	chr1:1368257-1368536(-)$1	279	176	210	16.0794
CCCGGCUGUGGGGCUCGGGCAGGAgggaaccaug	chr14:103564223-103564535(+)$1	312	52	86	17.8243
CCUCACCAUGGAGUCCAUGUUCGAGGACGACAUC	chr17:45773336-45773568(+)$1	232	135	169	17.7475
gcuccggggcgcgagggaagggggccgaggugag	chr7:100137197-100137440(+)$1	243	61	95	16.3618
ACUGGUCUGGGGUCAUACACAUAAAUGUCCUGGG	chr1:90309647-90309888(+)$1	241	65	99	18.5737
CCAGAACAGUGGGCUGGACAGAGGCAGUGCAGAG	chr3:126710964-126711227(+)$1	263	58	92	17.4919
UCUUGGCCUCAAGUGGAACAAGGGCUCCUUGAGG	chr6:43745854-43746079(+)$1	225	116	150	18.3381
CCGGAGCCCAGCGCCUUCCAUGCACCGGGUGCUg	chr11:66512688-66513005(+)$1	317	4	38	12.0024
AGCAGUGGGGACCCCUGAGAGGCAAGGGGGCCUG	chr17:3504504-3504883(-)$1	379	228	262	16.6032
GAGCGGCGGGGCUGCUGCUGCCAGGGCGGCCUCG	chr1:82268388-82268656(+)$1	268	221	255	18.5355
CGUCUUUUUCCUUAGAUUUUAACCUUUGAGACCA	chr12:112757306-112757615(-)$1	309	54	88	15.7168
UGGGGGACCAGGGGGGCUGAGACACCCCAACUGc	chr16:30934902-30935151(+)$1	249	67	101	19.7926
CGAGAAGUUCCGGGUGAGUGGAUCCACUAGGAUG	chr17:75488622-75488851(+)$1	229	163	197	20.0587
GGAGCGGAGUUCCUGGAGGGGGUCCCAGGCUCAA	chr16:30538422-30538665(-)$1	243	86	120	17.7912
AUGCCGAGGAUGGGACCGGGUAGUGGGUGUGGUC	chr19:17320537-17320838(+)$1	301	124	158	15.7485
UUCGGGGCCCGCGCGCACCCUUGAGCGUGGGGGG	chr1:205718905-205719121(-)$1	216	156	190	17.5652

#DB
(.(((.((((.((.((........)).)).))))	chr17:7013454-7013712(-)$1	1	39	73	15.1918
.((((((..((.(((........))).)).))))	chr1:110167368-110167608(+)$1	1	46	80	14.5274
..(((((((((.((((........))))..))))	chr11:71936576-71936846(+)$1	1	96	130	17.8370
)))).(((.(((((((........))))))))))	chr11:432471-432767(-)$1	1	55	89	16.6734
((...(((((((.(((........))).))))))	chr6:155113925-155114202(+)$1	1	105	139	18.3568
(((.(...((((((((........))))...)))	chr19:1068710-1068968(+)$1	1	204	238	19.3648
))))))(((((.((((........)))).)))))	chr14:24616191-24616473(+)$1	1	230	264	15.1510
((((((..(((((((.........)))).)))..	chr12:132195656-132195916(+)$1	1	181	215	13.2192
(((((((....((((.........))))))))))	chr12:123465304-123465582(+)$1	1	185	219	12.7328
((.(((.((((.((((........))))...)))	chr9:123237707-123237998(-)$1	1	230	264	19.4766
))((((.((.(((..(........)..))).)).	chr6:76311596-76311848(+)$1	1	136	170	15.7546
...).))(((..((((........))))..))).	chr19:56166245-56166485(+)$1	1	110	144	17.7177
(((((.(((...((((........))))...)))	chr1:155898992-155899267(-)$1	1	184	218	20.0409
((((((((((((((((........))))....))	chr15:25328459-25328747(+)$1	1	108	142	20.1957
(((((((.((...(((........)))....)).	chr6:44041464-44041726(-)$1	1	15	49	17.8773
((((((.((...((((........))))...)).	chr19:55751353-55751583(-)$1	1	99	133	19.2436
.....((..(((((((........)))))))...	chr9:136553515-136553782(-)$1	1	199	233	16.8530
((.....(((((((((........)))...))))	chr20:62698653-62698961(+)$1	1	143	177	17.5285
((.....((((.((((........))))..))))	chr16:50656803-50657043(+)$1	1	193	227	18.0519
((((((((.((((.((........)))))).)))	chr17:74083958-74084226(-)$1	1	147	181	17.1346
((((.(((((..((((........))))..))))	chr16:22019348-22019659(+)$1	1	271	305	18.4773
(((.....(((.((((........)))).)))..	chr10:103114022-103114344(+)$1	1	27	61	18.0607
(((((((..((..(((........)))...))..	chr15:63335330-63335623(+)$1	1	78	112	18.5427
((((((((....((((........))))..))))	chr11:1595026-1595296(+)$1	1	173	207	17.2974
(.(((((..(((((((........))))))))))	chr7:55247053-55247413(+)$1	1	280	314	16.9409
(((..(.(((((.(((........))).))))).	chr16:718194-718443(+)$1	1	168	202	18.0640
((((((((((((..((........))..)).)))	chr7:44646207-44646580(+)$1	1	261	295	16.7819
(((..(.(((((.(((........))).))..))	chr14:23790730-23790937(+)$1	1	92	126	17.5718
((((((((((...(((........)))...))))	chr13:113762043-113762308(+)$1	1	137	171	18.0699
...)))(((((((.(((........))).)))).	chr2:177146370-177146700(+)$1	1	207	241	15.0468
..(((((((..(((((........)))))..)))	chr8:144778220-144778572(+)$1	1	266	300	17.5245
((((((((((((.(((........)))..)))))	chr11:93474233-93474527(-)$1	1	170	204	18.6138
(((..(((..((((((........))))))..).	chr1:1368257-1368536(-)$1	1	176	210	16.0794
(((..((((((..(((........)))..)))))	chr14:103564223-103564535(+)$1	1	52	86	17.8243
)).))).(((..((((........))))..))).	chr17:45773336-45773568(+)$1	1	135	169	17.7475
.(((((...(((..((........))...)))..	chr7:100137197-100137440(+)$1	1	61	95	16.3618
(((..(((.(((.(((........))).))).))	chr1:90309647-90309888(+)$1	1	65	99	18.5737
(((((((..((.((((........)))).))..)	chr3:126710964-126711227(+)$1	1	58	92	17.4919
(..((((((((((.((........)).)))))))	chr6:43745854-43746079(+)$1	1	116	150	18.3381
((....((((((((((..........))))))))	chr11:66512688-66513005(+)$1	1	4	38	12.0024
))).((.(((.(((((........))))).))).	chr17:3504504-3504883(-)$1	1	228	262	16.6032
((.(.(((((((((((........))))))))))	chr1:82268388-82268656(+)$1	1	221	255	18.5355
((..(((((.((((((........))))))...)	chr12:112757306-112757615(-)$1	1	54	88	15.7168
)(((((..(((.((((........))))..))))	chr16:30934902-30935151(+)$1	1	67	101	19.7926
(((.(...(((.((((........)))).)))).	chr17:75488622-75488851(+)$1	1	163	197	20.0587
((..(.(((..(((((........))))))))..	chr16:30538422-30538665(-)$1	1	86	120	17.7912
.((((..((((.(.(((........))).).)))	chr19:17320537-17320838(+)$1	1	124	158	15.7485
)))(((.(((.(((((........))))).))).	chr1:205718905-205719121(-)$1	1	156	190	17.5652

#PSSM
d : 0.18	f : 0.14	b : 0.08	g : 0.08	e : 0.08	= : 0.06	h : 0.06	[ : 0.04	$ : 0.04	c : 0.04	i : 0.04	a : 0.02	F : 0.02	4 : 0.02	3 : 0.02	" : 0.02	# : 0.02	
d : 0.20	f : 0.14	e : 0.12	b : 0.06	= : 0.06	g : 0.06	h : 0.06	[ : 0.04	$ : 0.04	c : 0.04	i : 0.04	F : 0.02	4 : 0.02	3 : 0.02	" : 0.02	! : 0.02	
d : 0.16	e : 0.14	f : 0.12	c : 0.08	= : 0.06	g : 0.06	$ : 0.06	! : 0.06	[ : 0.04	h : 0.04	" : 0.02	F : 0.02	4 : 0.02	i : 0.02	3 : 0.02	] : 0.02	# : 0.02	
c : 0.18	! : 0.14	e : 0.12	d : 0.08	$ : 0.08	f : 0.06	= : 0.06	[ : 0.04	g : 0.04	a : 0.04	" : 0.02	F : 0.02	i : 0.02	h : 0.02	# : 0.02	: : 0.02	
c : 0.16	e : 0.14	! : 0.10	$ : 0.08	f : 0.06	a : 0.06	= : 0.06	g : 0.04	d : 0.04	[ : 0.04	b : 0.04	: : 0.02	" : 0.02	F : 0.02	] : 0.02	i : 0.02	h : 0.02	# : 0.02	
c : 0.14	e : 0.14	b : 0.10	f : 0.08	g : 0.08	= : 0.08	[ : 0.06	a : 0.06	$ : 0.06	" : 0.04	F : 0.02	d : 0.02	i : 0.02	h : 0.02	# : 0.02	! : 0.02	
[ : 0.14	e : 0.12	c : 0.10	= : 0.10	g : 0.08	f : 0.06	" : 0.06	! : 0.06	b : 0.06	$ : 0.06	d : 0.04	i : 0.02	h : 0.02	: : 0.02	a : 0.02	
c : 0.20	! : 0.14	d : 0.10	= : 0.10	e : 0.08	f : 0.06	g : 0.06	" : 0.06	b : 0.04	# : 0.02	[ : 0.02	i : 0.02	$ : 0.02	h : 0.02	a : 0.02	
c : 0.25	d : 0.12	! : 0.12	= : 0.10	e : 0.08	f : 0.06	[ : 0.06	g : 0.06	b : 0.06	# : 0.04	" : 0.02	
c : 0.22	d : 0.16	g : 0.10	= : 0.10	b : 0.08	f : 0.06	e : 0.06	! : 0.06	# : 0.04	[ : 0.04	" : 0.04	
c : 0.14	d : 0.12	b : 0.10	f : 0.10	g : 0.10	! : 0.10	" : 0.08	= : 0.08	[ : 0.06	e : 0.04	# : 0.04	
[ : 0.20	g : 0.10	d : 0.10	! : 0.10	e : 0.10	" : 0.08	= : 0.08	b : 0.06	c : 0.06	f : 0.06	# : 0.02	
d : 0.41	[ : 0.10	! : 0.08	e : 0.08	g : 0.06	f : 0.06	= : 0.06	c : 0.04	" : 0.04	b : 0.02	a : 0.02	
d : 0.37	c : 0.22	[ : 0.10	e : 0.08	g : 0.06	! : 0.06	f : 0.04	= : 0.04	
d : 0.37	c : 0.27	b : 0.10	e : 0.08	g : 0.06	f : 0.04	= : 0.04	! : 0.02	
d : 0.33	c : 0.25	b : 0.10	e : 0.08	g : 0.06	r : 0.04	f : 0.04	= : 0.04	q : 0.02	a : 0.02	
q : 0.89	r : 0.04	c : 0.04	s : 0.02	
q : 0.93	r : 0.04	s : 0.02	
q : 0.93	r : 0.04	s : 0.02	
q : 0.93	r : 0.04	s : 0.02	
q : 0.93	r : 0.04	s : 0.02	
q : 0.93	r : 0.04	s : 0.02	
q : 0.93	r : 0.04	s : 0.02	
q : 0.91	r : 0.04	c : 0.02	s : 0.02	
d : 0.37	c : 0.22	b : 0.10	e : 0.08	g : 0.06	q : 0.04	f : 0.04	a : 0.02	s : 0.02	= : 0.02	
d : 0.37	c : 0.27	b : 0.10	e : 0.08	g : 0.06	f : 0.04	2 : 0.02	s : 0.02	= : 0.02	
d : 0.39	c : 0.25	e : 0.08	] : 0.06	g : 0.06	2 : 0.04	f : 0.04	= : 0.04	3 : 0.02	
d : 0.39	] : 0.08	3 : 0.08	e : 0.08	g : 0.06	c : 0.06	2 : 0.06	= : 0.06	b : 0.04	f : 0.04	4 : 0.02	
2 : 0.18	3 : 0.16	] : 0.14	g : 0.10	e : 0.10	b : 0.08	= : 0.06	c : 0.04	4 : 0.04	f : 0.04	d : 0.02	
2 : 0.16	3 : 0.14	c : 0.14	g : 0.12	] : 0.08	b : 0.06	f : 0.06	= : 0.06	e : 0.04	4 : 0.04	d : 0.04	a : 0.02	
c : 0.22	g : 0.12	3 : 0.10	d : 0.08	f : 0.08	] : 0.08	e : 0.06	2 : 0.06	= : 0.06	4 : 0.04	b : 0.04	h : 0.02	
c : 0.25	d : 0.14	f : 0.08	g : 0.08	e : 0.08	b : 0.08	= : 0.08	2 : 0.06	3 : 0.04	4 : 0.02	i : 0.02	h : 0.02	] : 0.02	
c : 0.18	d : 0.14	= : 0.10	f : 0.08	g : 0.08	e : 0.08	2 : 0.08	b : 0.06	3 : 0.04	a : 0.04	i : 0.02	6 : 0.02	h : 0.02	5 : 0.02	
] : 0.18	d : 0.12	e : 0.10	= : 0.10	f : 0.08	c : 0.08	g : 0.08	2 : 0.06	: : 0.04	3 : 0.02	i : 0.02	6 : 0.02	h : 0.02	5 : 0.02	a : 0.02	

#score	830.153620294463
#seq	48
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_UTR_m3_run2.txt

#BEAR
dd[a[bb!!ddddpppppppdddd22bb]a]dddd:	chr17:7123741-7124002(+)$1	261	170	206	11.3735
hhh####cccssssssssssccc333hhhhhhhh33	chr17:37883379-37883656(+)$1	277	71	107	12.4291
gggggg"""ddddpppppppdddd4444ggggggg2	chr1:2327059-2327308(+)$1	249	56	92	12.2045
!!ccc[bbddddqqqqqqqqdddd]bbccc22dddd	chr11:61634375-61634656(+)$1	281	172	208	13.3806
""bb!!ccc!!aqqqqqqqqa22ccc22bb333bb]	chr14:24614890-24615199(-)$1	309	32	68	11.6379
dddd"""cccddddnnnnndddd333ccc333dddd	chr17:62498269-62498494(-)$1	225	2	38	10.3703
ddgggggggcccqqqqqqqqccc22gggggggHHHH	chr19:2228265-2228507(+)$1	242	187	223	10.3654
"dddda!!ddddpppppppdddd22a]dddd22eee	chr16:4863743-4864002(-)$1	259	72	108	12.4339
eeee[ccc[arrrrrrrrra]ccc]eeeeeeeeee[	chr6:31937133-31937369(+)$1	236	26	62	12.5140
d####iiiiiiiiipppppppiiiiiiiii22dddd	chr17:7477394-7477630(+)$1	236	100	136	11.6903
ccc####eeeeeqqqqqqqqeeeeecccdddd22dd	chr2:216177027-216177307(+)$1	280	162	198	12.2167
eeee[eeeeerrrrrrrrreeeee22eeeee333a]	chr22:32003726-32004024(+)$1	298	192	228	13.2624
fffff!!ddddrrrrrrrrrdddd22ffffff]ddd	chr16:89724493-89724758(+)$1	265	102	138	13.3855
cc[cccdddd[bbqqqqqqqqbb22dddd]ccc]cc	chr16:28847426-28847662(+)$1	236	197	233	10.7111
Beeeee[cccssssssssssccc333eeeee::ddd	chr6:31638709-31638988(+)$1	279	140	176	10.8811
a[ccc[aeeeeepppppppeeeee]a]ccc]a]a]d	chr17:2593182-2593453(-)$1	271	149	185	11.9845
d####dddd[cccrrrrrrrrrccc]dddd22dddd	chr19:5933405-5933653(-)$1	248	139	175	13.5487
eee[a[ccctttttttttttccc]a]eeeee22a22	chr17:7477340-7477585(+)$1	245	87	123	10.9517
ee[ccccccwwwwwwwwwwwwwwccc]ccc]eeeee	chr1:25568833-25569128(-)$1	295	213	249	11.9671
"""eeeee[cccqqqqqqqqccc22eeeee4444ff	chr9:19378848-19379096(-)$1	248	33	69	13.2267
==========[bbaooooooa]bb]==========]	chr3:48670988-48671252(-)$1	264	138	174	10.1467
ddddccc[ddddqqqqqqqqddddccc]ddddgggg	chr17:40271104-40271356(-)$1	252	7	43	11.9828
d####iiiiiiiiipppppppiiiiiiiii22dddd	chr17:7477430-7477656(+)$1	226	64	100	11.6903

#otherMatches

#Seq PSSM
UCUCUGCCCAGGAAUCUAAGUCCUUUGCUGUGGGAA	chr17:7123741-7124002(+)$1	261	170	206	11.3735
GACCUCUGUUUUUCUCCUGUGACCCUGUCACCUUCC	chr17:37883379-37883656(+)$1	277	71	107	12.4291
AUACUGAAUGUGGAAGAAACCUACUUGACAGUGUUG	chr1:2327059-2327308(+)$1	249	56	92	12.2045
AACCCACUAAUCAGUUCUUAGAUUCAGGGGAAGGGC	chr11:61634375-61634656(+)$1	281	172	208	13.3806
auaucacaguccuaaccuucguucugccauuuacca	chr14:24614890-24615199(-)$1	309	32	68	11.6379
UCACGAGCAGUGGAUUUUUUUCAUAUCUGAUAGUGA	chr17:62498269-62498494(-)$1	225	2	38	10.3703
CACAGGGCUCGGCAGAAGUUCCGGGGGUCCUGAGGA	chr19:2228265-2228507(+)$1	242	187	223	10.3654
AACAGCAGCAGGAUUCUGAUCUGAGGUCUGUAGGGC	chr16:4863743-4864002(-)$1	259	72	108	12.4339
GGCUGGUUGAGGUUGUAUAUGAGUGGGCCCGGGGCA	chr6:31937133-31937369(+)$1	236	26	62	12.5140
GCCACUCCUGACAGAGCCCGGCUGUCAGGAUUUCUG	chr17:7477394-7477630(+)$1	236	100	136	11.6903
GAAUCAUGAGAAAAAAUGUCUUCUCUUUCAGCCUUA	chr2:216177027-216177307(+)$1	280	162	198	12.2167
AUAGGUCCUGGUCCAGUGGCGGGAAGCUGUGUCAGU	chr22:32003726-32004024(+)$1	298	192	228	13.2624
GGGACCCACUGCCCUGCAUUCGGUAAGUCCCGGGUC	chr16:89724493-89724758(+)$1	265	102	138	13.3855
CCGACCUGCACCUGUCUGUGAAGUAUGUAGGGUGGG	chr16:28847426-28847662(+)$1	236	197	233	10.7111
UGGCCAUGGAUAAUCGGGCUUCCUACUGGCCCAGGG	chr6:31638709-31638988(+)$1	279	140	176	10.8811
CGGGAGCCGCCGUUGUGACUGGCGUGGUCUGGCUGC	chr17:2593182-2593453(-)$1	271	149	185	11.9845
UGAUAUUUUGUCUUGUGCUUUUAGAGGAAAGGAGCA	chr19:5933405-5933653(-)$1	248	139	175	13.5487
CCUUUGGGUAUUUUUUGGGAGCUGGUGGGAGUUGGA	chr17:7477340-7477585(+)$1	245	87	123	10.9517
UUCUCUUGCAGAUAUGAGAGAUAGCACAGAUGGACC	chr1:25568833-25569128(-)$1	295	213	249	11.9671
CACUGAACAGAGAAAACGUGCUUAAGUUCAAAUUGG	chr9:19378848-19379096(-)$1	248	33	69	13.2267
GGGCCAGGGAUGCCUUCACUGUGUCUCUCUGGUCUU	chr3:48670988-48671252(-)$1	264	138	174	10.1467
CCGCCGGCAGCUGCUGGAAAAGUUCCGAGUGGAGAA	chr17:40271104-40271356(-)$1	252	7	43	11.9828
GCCACUCCUGACAGAGCCCGGCUGUCAGGAUUUCUG	chr17:7477430-7477656(+)$1	226	64	100	11.6903

#DB
((.(.((..((((.......))))..)).).)))).	chr17:7123741-7124002(+)$1	1	170	206	11.3735
(((....(((..........)))...))))))))..	chr17:37883379-37883656(+)$1	1	71	107	12.4291
((((((...((((.......))))....))))))).	chr1:2327059-2327308(+)$1	1	56	92	12.2045
..(((.((((((........)))).)))))..))))	chr11:61634375-61634656(+)$1	1	172	208	13.3806
..((..(((..(........)..)))..))...)).	chr14:24614890-24615199(-)$1	1	32	68	11.6379
((((...(((((((.....))))...)))...))))	chr17:62498269-62498494(-)$1	1	2	38	10.3703
))((((((((((........)))..)))))))))))	chr19:2228265-2228507(+)$1	1	187	223	10.3654
.(((((..((((.......))))..).))))..)))	chr16:4863743-4864002(-)$1	1	72	108	12.4339
((((.(((.(.........).))).)))))(((((.	chr6:31937133-31937369(+)$1	1	26	62	12.5140
(....(((((((((.......)))))))))..))))	chr17:7477394-7477630(+)$1	1	100	136	11.6903
(((....(((((........))))))))))))..))	chr2:216177027-216177307(+)$1	1	162	198	12.2167
((((.(((((.........)))))..)))))...).	chr22:32003726-32004024(+)$1	1	192	228	13.2624
(((((..((((.........))))..)))))).)))	chr16:89724493-89724758(+)$1	1	102	138	13.3855
((.(((((((.((........))..)))).))).))	chr16:28847426-28847662(+)$1	1	197	233	10.7111
((((((.(((..........)))...)))))..(((	chr6:31638709-31638988(+)$1	1	140	176	10.8811
(.(((.((((((.......))))).).))).).).)	chr17:2593182-2593453(-)$1	1	149	185	11.9845
(....((((.(((.........))).))))..))))	chr19:5933405-5933653(-)$1	1	139	175	13.5487
(((.(.(((...........))).).)))))..)..	chr17:7477340-7477585(+)$1	1	87	123	10.9517
((.((((((..............))).))).)))))	chr1:25568833-25569128(-)$1	1	213	249	11.9671
...(((((.(((........)))..)))))....))	chr9:19378848-19379096(-)$1	1	33	69	13.2267
((((((((((.(((......).)).)))))))))).	chr3:48670988-48671252(-)$1	1	138	174	10.1467
(((((((.((((........))))))).))))((((	chr17:40271104-40271356(-)$1	1	7	43	11.9828
(....(((((((((.......)))))))))..))))	chr17:7477430-7477656(+)$1	1	64	100	11.6903

#PSSM
d : 0.30	e : 0.17	" : 0.13	c : 0.08	h : 0.04	g : 0.04	! : 0.04	f : 0.04	B : 0.04	a : 0.04	= : 0.04	
d : 0.21	e : 0.21	# : 0.13	" : 0.08	c : 0.08	h : 0.04	g : 0.04	! : 0.04	f : 0.04	[ : 0.04	= : 0.04	
e : 0.17	[ : 0.13	c : 0.13	d : 0.13	# : 0.13	g : 0.08	h : 0.04	b : 0.04	f : 0.04	" : 0.04	= : 0.04	
# : 0.21	c : 0.17	e : 0.17	d : 0.13	g : 0.08	a : 0.04	b : 0.04	f : 0.04	[ : 0.04	= : 0.04	
# : 0.21	c : 0.21	[ : 0.13	g : 0.08	e : 0.08	! : 0.04	" : 0.04	d : 0.04	f : 0.04	a : 0.04	= : 0.04	
c : 0.17	[ : 0.13	e : 0.13	# : 0.08	g : 0.08	! : 0.08	i : 0.08	b : 0.04	" : 0.04	a : 0.04	d : 0.04	= : 0.04	
c : 0.21	b : 0.08	# : 0.08	" : 0.08	! : 0.08	i : 0.08	e : 0.08	d : 0.08	g : 0.04	[ : 0.04	a : 0.04	= : 0.04	
c : 0.30	e : 0.17	d : 0.13	! : 0.08	i : 0.08	" : 0.04	b : 0.04	g : 0.04	= : 0.04	[ : 0.04	
c : 0.26	d : 0.26	e : 0.13	[ : 0.08	i : 0.08	! : 0.04	" : 0.04	g : 0.04	= : 0.04	
d : 0.30	c : 0.21	e : 0.13	i : 0.08	! : 0.04	a : 0.04	[ : 0.04	t : 0.04	w : 0.04	= : 0.04	
d : 0.30	c : 0.13	s : 0.08	r : 0.08	i : 0.08	e : 0.08	[ : 0.08	! : 0.04	t : 0.04	w : 0.04	
d : 0.26	c : 0.13	r : 0.13	s : 0.08	i : 0.08	e : 0.08	b : 0.08	a : 0.04	t : 0.04	w : 0.04	
q : 0.26	d : 0.13	r : 0.13	s : 0.08	p : 0.08	i : 0.08	b : 0.08	c : 0.04	t : 0.04	w : 0.04	
q : 0.30	p : 0.17	r : 0.17	s : 0.08	i : 0.08	d : 0.04	t : 0.04	w : 0.04	a : 0.04	
q : 0.30	p : 0.26	r : 0.17	s : 0.08	n : 0.04	t : 0.04	w : 0.04	o : 0.04	
q : 0.30	p : 0.26	r : 0.17	s : 0.08	n : 0.04	t : 0.04	w : 0.04	o : 0.04	
q : 0.30	p : 0.26	r : 0.17	s : 0.08	n : 0.04	t : 0.04	w : 0.04	o : 0.04	
q : 0.30	p : 0.26	r : 0.17	s : 0.08	n : 0.04	t : 0.04	w : 0.04	o : 0.04	
q : 0.30	p : 0.26	r : 0.17	s : 0.08	n : 0.04	t : 0.04	w : 0.04	o : 0.04	
q : 0.30	p : 0.17	s : 0.08	d : 0.08	e : 0.08	r : 0.08	a : 0.04	t : 0.04	w : 0.04	o : 0.04	
d : 0.30	c : 0.21	e : 0.13	a : 0.08	p : 0.08	] : 0.04	q : 0.04	r : 0.04	w : 0.04	
d : 0.30	c : 0.26	e : 0.13	i : 0.08	2 : 0.04	b : 0.04	r : 0.04	w : 0.04	] : 0.04	
d : 0.30	c : 0.30	e : 0.13	i : 0.08	b : 0.08	2 : 0.04	w : 0.04	
d : 0.21	c : 0.17	2 : 0.17	3 : 0.13	e : 0.13	i : 0.08	] : 0.04	b : 0.04	
2 : 0.30	] : 0.17	c : 0.17	3 : 0.13	i : 0.08	4 : 0.04	e : 0.04	a : 0.04	
c : 0.17	2 : 0.13	3 : 0.13	a : 0.08	e : 0.08	i : 0.08	] : 0.08	4 : 0.04	b : 0.04	g : 0.04	d : 0.04	= : 0.04	
e : 0.21	c : 0.13	] : 0.13	b : 0.08	i : 0.08	d : 0.08	h : 0.04	4 : 0.04	2 : 0.04	g : 0.04	f : 0.04	= : 0.04	
c : 0.21	e : 0.21	d : 0.13	i : 0.08	b : 0.04	h : 0.04	4 : 0.04	2 : 0.04	g : 0.04	f : 0.04	= : 0.04	] : 0.04	
d : 0.21	e : 0.21	c : 0.17	g : 0.08	i : 0.08	] : 0.04	h : 0.04	b : 0.04	f : 0.04	= : 0.04	
e : 0.21	d : 0.17	c : 0.13	g : 0.08	i : 0.08	a : 0.04	h : 0.04	b : 0.04	3 : 0.04	f : 0.04	] : 0.04	= : 0.04	
2 : 0.17	e : 0.17	] : 0.13	d : 0.13	g : 0.08	3 : 0.08	h : 0.04	f : 0.04	c : 0.04	4 : 0.04	= : 0.04	
2 : 0.26	d : 0.13	3 : 0.13	g : 0.08	e : 0.08	h : 0.04	f : 0.04	c : 0.04	: : 0.04	a : 0.04	4 : 0.04	= : 0.04	
d : 0.26	2 : 0.13	g : 0.08	3 : 0.08	e : 0.08	] : 0.08	h : 0.04	H : 0.04	c : 0.04	: : 0.04	4 : 0.04	= : 0.04	
d : 0.34	e : 0.13	g : 0.08	a : 0.08	h : 0.04	b : 0.04	H : 0.04	2 : 0.04	3 : 0.04	] : 0.04	4 : 0.04	= : 0.04	
d : 0.39	e : 0.13	g : 0.08	3 : 0.04	b : 0.04	H : 0.04	a : 0.04	c : 0.04	] : 0.04	2 : 0.04	f : 0.04	= : 0.04	
d : 0.39	] : 0.13	2 : 0.08	e : 0.08	: : 0.04	3 : 0.04	H : 0.04	[ : 0.04	c : 0.04	f : 0.04	g : 0.04	

#score	274.35616575290874
#seq	23
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_CDS_m3_run1.txt

#BEAR
cc####cccmmmmccc333ccc	chr16:67976909-67977166(-)$1	257	110	132	12.9823
ffff[ddddmmmmdddd]ffff	chr5:14293058-14293332(+)$1	274	14	36	8.8343
eeeee[cccmmmmccc333eee	chr9:117066800-117067053(+)$1	253	218	240	12.1621
dd[a[ddddmmmmdddd22a]d	chr1:113237008-113237257(+)$1	249	200	222	9.6471
:ccc!!cccmmmmccc22ccc:	chr12:110883155-110883441(-)$1	286	196	218	11.1214
cccc[ddddllldddd22ccc]	chr11:129991408-129991621(+)$1	213	100	122	8.7698
eeeee[cccmmmmccc]eeeee	chr2:242194758-242194993(-)$1	235	180	202	11.1263
dddd!!cccmmmmccc22dddd	chr17:30228481-30228800(-)$1	319	64	86	12.4826
ee####cccmmmmccc4444ee	chr10:113941352-113941670(-)$1	318	154	176	12.1760
d$$$$$cccmmmmccc22dddd	chr12:103310802-103311087(-)$1	285	113	135	11.5273
gggg[ddddmmmmddddggggg	chr15:69072334-69072583(-)$1	249	88	110	9.2654
dddd!!cccmmmmccc22dddd	chr2:27604530-27604772(-)$1	242	143	165	12.4826
#ccc[ddddmmmmdddd]ccc5	chr14:39644432-39644647(+)$1	215	157	179	9.1110
!!ccc[cccmmmmccc]ccc22	chr16:68308644-68308952(+)$1	308	133	155	11.1491
ggggg!!ccclllccc22gggg	chr6:7574271-7574495(+)$1	224	36	58	10.0260
[dddd[cccmmmmccc]dddd]	chr9:131347927-131348198(+)$1	271	192	214	11.1579
ff"""ddddmmmmdddd22fff	chr8:25167839-25168142(+)$1	303	127	149	9.7174
ccbb"""bbmmmmbb333bb]c	chr6:31499022-31499250(-)$1	228	97	119	9.3856
ff####ccclllccc333ffff	chr2:162929812-162930094(-)$1	282	31	53	9.7803
eeeee[cccmmmmccceeeee]	chr2:178257529-178257836(+)$1	307	97	119	10.6140
[dddd!!ccclllccc22dddd	chr5:139838729-139838987(+)$1	258	117	139	9.9611
b[ccc[cccmmmmccc333ccc	chr14:74762970-74763249(-)$1	279	133	155	12.1593
eee!!ddddllldddd22eeee	chr2:232325171-232325375(-)$1	204	69	91	8.6966
gg####cccmmmmccc22gggg	chr6:30638484-30638773(-)$1	289	164	186	12.7626
:dddd[cccmmmmccc22dddd	chr20:61542322-61542596(-)$1	274	105	127	11.1075
:ccc!!cccmmmmccc]ccccc	chr16:67174370-67174622(+)$1	252	71	93	11.0385
:eeeeecccmmmmccc]eeeee	chr2:54871359-54871622(+)$1	263	205	227	9.6213
eeee!!cccmmmmccc22eeee	chr6:24357686-24357911(-)$1	225	142	164	12.6022
cc"""cccnnnnnccc333ccc	chr16:22335773-22336065(+)$1	292	138	160	8.9070
iiiiiiiiimmmmiiiiiiiii	chr3:53853405-53853721(-)$1	316	34	56	8.9171
c####ddddmmmmdddd]cccb	chr2:96962570-96962809(-)$1	239	72	94	9.7686
iii####bbmmmmbb4444iii	chr9:14868642-14868860(-)$1	218	188	210	10.0319
$dddd[cccmmmmccc]dddd2	chr2:201334544-201334807(+)$1	263	198	220	10.6596
eeeee[cccmmmmccc22eeee	chr17:48797009-48797241(+)$1	232	169	191	12.0718
hh####cccmmmmccc22hhhh	chr1:67895718-67895949(-)$1	231	16	38	11.7523
ccc[a[cccmmmmccc]accc:	chr17:27448779-27449050(-)$1	271	21	43	10.9810
[dddd!!ccclllccc22dddd	chr5:139838787-139839024(+)$1	237	59	81	9.9611
eeee"""ccclllccc]eeeee	chr2:61575436-61575712(-)$1	276	219	241	9.3707
ffddddcccmmmmccc22dddd	chr19:55753428-55753718(-)$1	290	253	275	11.3252
c!!bb[cccmmmmccc]bb>>>	chr5:137498731-137499056(-)$1	325	99	121	9.5248
ddd!!ddddmmmmdddd22ddd	chr12:76449716-76449949(-)$1	233	137	159	9.9729
g[ccc!!ccclllccc22cccg	chr9:71835702-71835948(+)$1	246	57	79	10.2977
!!ccc!!bbmmmmbb22ccc22	chr16:23499824-23500126(-)$1	302	162	184	9.0456
dddd[ddddmmmmdddd]dddd	chr16:71950341-71950647(+)$1	306	200	222	9.5279
ffff!!cccmmmmcccffffff	chr7:99697544-99697806(-)$1	262	218	240	10.1394
eeeee[cccmmmmccc]eeeee	chr2:27424579-27424815(-)$1	236	83	105	11.1263
c"""a[cccmmmmccc]accc]	chr4:39310288-39310587(-)$1	299	230	252	11.9730
[dddd[cccmmmmcccddddee	chr1:70697443-70697754(+)$1	311	102	124	10.5936
ffff[ddddmmmmdddd4444f	chr1:39903485-39903774(+)$1	289	34	56	9.0137
[ccc[ddddmmmmdddd]cccd	chr22:36680355-36680604(-)$1	249	224	246	10.0145
eeeee[cccmmmmccceeeee:	chr20:62305209-62305500(+)$1	291	88	110	9.6855
ggg!!a[bbmmmmbb]a]gggg	chr16:89971295-89971567(+)$1	272	150	172	9.3573
ccc!!a[bbmmmmbb]a]ccc2	chr19:57325048-57325301(-)$1	253	97	119	9.5030
=========mmmm=========	chr20:34319818-34320075(-)$1	257	5	27	9.4577

#otherMatches

#Seq PSSM
UGGAUGUGCUACCGCAAGACAG	chr16:67976909-67977166(-)$1	257	110	132	12.9823
AAUUUCUCUUUCUGGAGUGAUU	chr5:14293058-14293332(+)$1	274	14	36	8.8343
ACAUGUGGUCAGUGCCUUCCAU	chr9:117066800-117067053(+)$1	253	218	240	12.1621
CACCUCGGGACGUCCCGCUGCU	chr1:113237008-113237257(+)$1	249	200	222	9.6471
CCCAUUAUUUUCAAAUUUUGGU	chr12:110883155-110883441(-)$1	286	196	218	11.1214
GCAUGUCUGACUCAGGGAAUGA	chr11:129991408-129991621(+)$1	213	100	122	8.7698
GGCGUUGACUGAAGUCUAUGCC	chr2:242194758-242194993(-)$1	235	180	202	11.1263
UAGGGCUGGGUCUCCGAACCUG	chr17:30228481-30228800(-)$1	319	64	86	12.4826
UACAAUAGAUGUUUCUUAUCUG	chr10:113941352-113941670(-)$1	318	154	176	12.1760
CUGUUUGCAAACCUGCCUGUAC	chr12:103310802-103311087(-)$1	285	113	135	11.5273
UCUUACUUUUCCAGAAGAAGAA	chr15:69072334-69072583(-)$1	249	88	110	9.2654
CAGGGUGUGACAACAUGACCUG	chr2:27604530-27604772(-)$1	242	143	165	12.4826
ACGUGAGGUAAGGGCCUAACGG	chr14:39644432-39644647(+)$1	215	157	179	9.1110
GGGUCAGCCUGGUGGUGGGCAA	chr16:68308644-68308952(+)$1	308	133	155	11.1491
AUUUUUGACAGAGUGUGCAGAA	chr6:7574271-7574495(+)$1	224	36	58	10.0260
ACCUGGAGGACUCUCUGCAGGC	chr9:131347927-131348198(+)$1	271	192	214	11.1579
GUUCAGAAGAAUUUUUCACACU	chr8:25167839-25168142(+)$1	303	127	149	9.7174
GUGCAUUGCCUUGGCCCAGCUA	chr6:31499022-31499250(-)$1	228	97	119	9.3856
CGACCCUCCUACGGAAACUGGG	chr2:162929812-162930094(-)$1	282	31	53	9.7803
GGCUGCGGGUUCUCUCUGGCCA	chr2:178257529-178257836(+)$1	307	97	119	10.6140
GCAGGGGCUGAUAUAGAACUUG	chr5:139838729-139838987(+)$1	258	117	139	9.9611
CCGGCAGCUCAGCAGCAUGGCC	chr14:74762970-74763249(-)$1	279	133	155	12.1593
UGUGUGAUACAUUGUUUGACAU	chr2:232325171-232325375(-)$1	204	69	91	8.6966
CAAGGAUCGGACUCGAAAUGUC	chr6:30638484-30638773(-)$1	289	164	186	12.7626
CCUGACCUUGAAAGAGCUUCAG	chr20:61542322-61542596(-)$1	274	105	127	11.1075
AACAAGUUCCAUCGAAGUGUAA	chr16:67174370-67174622(+)$1	252	71	93	11.0385
ACAAAGGCCCAGCGGCUCUUUG	chr2:54871359-54871622(+)$1	263	205	227	9.6213
UGGCCACCGAAUCCGGAAGCUA	chr6:24357686-24357911(-)$1	225	142	164	12.6022
GGGAGUUCAUCAAGAAGCACCC	chr16:22335773-22336065(+)$1	292	138	160	8.9070
GCCCAUCUGGAAACAGGUGGGU	chr3:53853405-53853721(-)$1	316	34	56	8.9171
GAUCCAGAGUAAGCUCUACCGU	chr2:96962570-96962809(-)$1	239	72	94	9.7686
ACAGAGAACAGAUGUAAAAUGU	chr9:14868642-14868860(-)$1	218	188	210	10.0319
AGUUUUGCAUAUUUGCUGAAUA	chr2:201334544-201334807(+)$1	263	198	220	10.6596
GGGACCACGAGAGCGUAAGUCC	chr17:48797009-48797241(+)$1	232	169	191	12.0718
CGACCAGUUAUUUGACGACGAA	chr1:67895718-67895949(-)$1	231	16	38	11.7523
UGGAGUAGCAGAGGCUUCCCAG	chr17:27448779-27449050(-)$1	271	21	43	10.9810
GCAGGGGCUGAUAUAGAACUUG	chr5:139838787-139839024(+)$1	237	59	81	9.9611
CCAGUCAGCUGGGAGCCCUGGC	chr2:61575436-61575712(-)$1	276	219	241	9.3707
GGUCUCGGUGUCCACCAAGAGA	chr19:55753428-55753718(-)$1	290	253	275	11.3252
AAGGAGAAGGCUACUUGUCAGA	chr5:137498731-137499056(-)$1	325	99	121	9.5248
GUAAUUUUAUUCAUAAAUGUAC	chr12:76449716-76449949(-)$1	233	137	159	9.9729
UUGUGAUUGUCCUGCGUCCACA	chr9:71835702-71835948(+)$1	246	57	79	10.2977
AGAGCUCCAUCUUUGAUGCUGA	chr16:23499824-23500126(-)$1	302	162	184	9.0456
UGAAGUAAGAUAUUUUGAUUCA	chr16:71950341-71950647(+)$1	306	200	222	9.5279
GCCAUAAGCAGCAGCUUGGCUU	chr7:99697544-99697806(-)$1	262	218	240	10.1394
GCACUGUGUCUCGGCAGGGUGC	chr2:27424579-27424815(-)$1	236	83	105	11.1263
UCAAGACCAUAAUUGGACAGCA	chr4:39310288-39310587(-)$1	299	230	252	11.9730
GCAGCCGACACGAGUCGUUGUU	chr1:70697443-70697754(+)$1	311	102	124	10.5936
GAUCCCUGCUGAAGUAGACAAG	chr1:39903485-39903774(+)$1	289	34	56	9.0137
AGUGGGGCUGACUGGCUGCACG	chr22:36680355-36680604(-)$1	249	224	246	10.0145
GAUGUGUGAAGAAUCGGCAUCC	chr20:62305209-62305500(+)$1	291	88	110	9.6855
CACGAGGUUCUGCAAGCAGUGG	chr16:89971295-89971567(+)$1	272	150	172	9.3573
GCAAAUGCCUUUGGGGAGUGCU	chr19:57325048-57325301(-)$1	253	97	119	9.5030
UUUUUCUUCUCAGGAGGAAAAA	chr20:34319818-34320075(-)$1	257	5	27	9.4577

#DB
((....(((....)))...)))	chr16:67976909-67977166(-)$1	1	110	132	12.9823
((((.((((....)))).))))	chr5:14293058-14293332(+)$1	1	14	36	8.8343
(((((.(((....)))...)))	chr9:117066800-117067053(+)$1	1	218	240	12.1621
((.(.((((....))))..).)	chr1:113237008-113237257(+)$1	1	200	222	9.6471
.(((..(((....)))..))).	chr12:110883155-110883441(-)$1	1	196	218	11.1214
((((.((((...))))..))).	chr11:129991408-129991621(+)$1	1	100	122	8.7698
(((((.(((....))).)))))	chr2:242194758-242194993(-)$1	1	180	202	11.1263
((((..(((....)))..))))	chr17:30228481-30228800(-)$1	1	64	86	12.4826
((....(((....)))....))	chr10:113941352-113941670(-)$1	1	154	176	12.1760
(.....(((....)))..))))	chr12:103310802-103311087(-)$1	1	113	135	11.5273
((((.((((....)))))))))	chr15:69072334-69072583(-)$1	1	88	110	9.2654
((((..(((....)))..))))	chr2:27604530-27604772(-)$1	1	143	165	12.4826
.(((.((((....)))).))).	chr14:39644432-39644647(+)$1	1	157	179	9.1110
..(((.(((....))).)))..	chr16:68308644-68308952(+)$1	1	133	155	11.1491
(((((..(((...)))..))))	chr6:7574271-7574495(+)$1	1	36	58	10.0260
.((((.(((....))).)))).	chr9:131347927-131348198(+)$1	1	192	214	11.1579
((...((((....))))..)))	chr8:25167839-25168142(+)$1	1	127	149	9.7174
((((...((....))...)).)	chr6:31499022-31499250(-)$1	1	97	119	9.3856
((....(((...)))...))))	chr2:162929812-162930094(-)$1	1	31	53	9.7803
(((((.(((....)))))))).	chr2:178257529-178257836(+)$1	1	97	119	10.6140
.((((..(((...)))..))))	chr5:139838729-139838987(+)$1	1	117	139	9.9611
(.(((.(((....)))...)))	chr14:74762970-74763249(-)$1	1	133	155	12.1593
(((..((((...))))..))))	chr2:232325171-232325375(-)$1	1	69	91	8.6966
((....(((....)))..))))	chr6:30638484-30638773(-)$1	1	164	186	12.7626
.((((.(((....)))..))))	chr20:61542322-61542596(-)$1	1	105	127	11.1075
.(((..(((....))).)))((	chr16:67174370-67174622(+)$1	1	71	93	11.0385
.((((((((....))).)))))	chr2:54871359-54871622(+)$1	1	205	227	9.6213
((((..(((....)))..))))	chr6:24357686-24357911(-)$1	1	142	164	12.6022
((...(((.....)))...)))	chr16:22335773-22336065(+)$1	1	138	160	8.9070
(((((((((....)))))))))	chr3:53853405-53853721(-)$1	1	34	56	8.9171
(....((((....)))).))))	chr2:96962570-96962809(-)$1	1	72	94	9.7686
(((....((....))....)))	chr9:14868642-14868860(-)$1	1	188	210	10.0319
.((((.(((....))).)))).	chr2:201334544-201334807(+)$1	1	198	220	10.6596
(((((.(((....)))..))))	chr17:48797009-48797241(+)$1	1	169	191	12.0718
((....(((....)))..))))	chr1:67895718-67895949(-)$1	1	16	38	11.7523
(((.(.(((....))).)))).	chr17:27448779-27449050(-)$1	1	21	43	10.9810
.((((..(((...)))..))))	chr5:139838787-139839024(+)$1	1	59	81	9.9611
((((...(((...))).)))))	chr2:61575436-61575712(-)$1	1	219	241	9.3707
(((((((((....)))..))))	chr19:55753428-55753718(-)$1	1	253	275	11.3252
(..((.(((....))).))...	chr5:137498731-137499056(-)$1	1	99	121	9.5248
(((..((((....))))..)))	chr12:76449716-76449949(-)$1	1	137	159	9.9729
(.(((..(((...)))..))))	chr9:71835702-71835948(+)$1	1	57	79	10.2977
..(((..((....))..)))..	chr16:23499824-23500126(-)$1	1	162	184	9.0456
((((.((((....)))).))))	chr16:71950341-71950647(+)$1	1	200	222	9.5279
((((..(((....)))))))))	chr7:99697544-99697806(-)$1	1	218	240	10.1394
(((((.(((....))).)))))	chr2:27424579-27424815(-)$1	1	83	105	11.1263
(...(.(((....))).)))).	chr4:39310288-39310587(-)$1	1	230	252	11.9730
.((((.(((....)))))))))	chr1:70697443-70697754(+)$1	1	102	124	10.5936
((((.((((....))))....)	chr1:39903485-39903774(+)$1	1	34	56	9.0137
.(((.((((....)))).))))	chr22:36680355-36680604(-)$1	1	224	246	10.0145
(((((.(((....)))))))).	chr20:62305209-62305500(+)$1	1	88	110	9.6855
(((..(.((....)).).))))	chr16:89971295-89971567(+)$1	1	150	172	9.3573
(((..(.((....)).).))).	chr19:57325048-57325301(-)$1	1	97	119	9.5030
(((((((((....)))))))))	chr20:34319818-34320075(-)$1	1	5	27	9.4577

#PSSM
e : 0.18	c : 0.16	f : 0.11	d : 0.11	g : 0.09	[ : 0.09	: : 0.07	! : 0.03	i : 0.03	# : 0.01	b : 0.01	$ : 0.01	h : 0.01	= : 0.01	
e : 0.20	d : 0.20	c : 0.18	f : 0.11	g : 0.07	! : 0.05	[ : 0.03	i : 0.03	$ : 0.01	# : 0.01	h : 0.01	" : 0.01	= : 0.01	
c : 0.20	d : 0.20	e : 0.18	# : 0.11	f : 0.05	g : 0.05	" : 0.05	i : 0.03	[ : 0.01	$ : 0.01	b : 0.01	! : 0.01	= : 0.01	
d : 0.18	e : 0.16	c : 0.16	# : 0.12	! : 0.07	f : 0.05	" : 0.05	g : 0.03	b : 0.03	a : 0.01	$ : 0.01	i : 0.01	[ : 0.01	= : 0.01	
! : 0.18	[ : 0.14	# : 0.12	e : 0.12	d : 0.12	c : 0.07	" : 0.07	a : 0.03	$ : 0.01	g : 0.01	i : 0.01	b : 0.01	= : 0.01	
[ : 0.27	d : 0.24	! : 0.20	# : 0.11	" : 0.03	a : 0.03	$ : 0.01	e : 0.01	c : 0.01	i : 0.01	= : 0.01	
c : 0.55	d : 0.22	! : 0.09	" : 0.03	[ : 0.03	i : 0.01	# : 0.01	= : 0.01	
c : 0.64	d : 0.22	b : 0.09	i : 0.01	= : 0.01	
c : 0.62	d : 0.22	b : 0.09	n : 0.01	i : 0.01	= : 0.01	
m : 0.83	c : 0.09	l : 0.05	n : 0.01	
m : 0.83	l : 0.14	n : 0.01	
m : 0.83	l : 0.14	n : 0.01	
m : 0.83	l : 0.09	d : 0.03	c : 0.01	n : 0.01	
c : 0.64	d : 0.22	b : 0.09	i : 0.01	= : 0.01	
c : 0.64	d : 0.22	b : 0.09	i : 0.01	= : 0.01	
c : 0.62	d : 0.22	3 : 0.03	] : 0.03	i : 0.01	4 : 0.01	2 : 0.01	= : 0.01	
2 : 0.31	d : 0.20	] : 0.20	3 : 0.11	4 : 0.03	e : 0.03	a : 0.03	i : 0.01	f : 0.01	= : 0.01	
2 : 0.35	] : 0.12	3 : 0.11	e : 0.11	4 : 0.05	c : 0.05	d : 0.05	a : 0.03	g : 0.01	i : 0.01	b : 0.01	f : 0.01	= : 0.01	
c : 0.22	d : 0.20	e : 0.16	3 : 0.07	g : 0.07	f : 0.05	2 : 0.05	4 : 0.05	b : 0.03	i : 0.01	h : 0.01	= : 0.01	
c : 0.27	d : 0.22	e : 0.18	f : 0.07	g : 0.07	4 : 0.03	i : 0.03	a : 0.01	b : 0.01	h : 0.01	> : 0.01	= : 0.01	
c : 0.24	e : 0.22	d : 0.20	f : 0.07	g : 0.07	] : 0.03	2 : 0.03	i : 0.03	h : 0.01	> : 0.01	4 : 0.01	= : 0.01	
d : 0.20	e : 0.18	c : 0.09	f : 0.09	g : 0.09	] : 0.07	2 : 0.07	: : 0.05	i : 0.03	5 : 0.01	b : 0.01	h : 0.01	> : 0.01	= : 0.01	

#score	564.4496532951998
#seq	54
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_CDS_m3_run2.txt

#BEAR
fbboooooobb]	chr16:30079864-30080096(+)$1	232	192	204	9.3440
cccooooooccc	chr8:146015122-146015411(-)$1	289	235	247	10.3054
gggooooooggg	chr1:35657975-35658214(-)$1	239	69	81	9.6368
gbboooooobb]	chr2:97543590-97543873(-)$1	283	104	116	9.4091
eeeooooooeee	chr19:3983012-3983303(-)$1	291	52	64	9.3326
dddooooooddd	chr16:30078454-30078695(+)$1	241	106	118	9.5104
cccooooooccc	chr16:58231517-58231871(-)$1	354	233	245	10.3054
!bboooooobb2	chr19:1241671-1242017(+)$1	346	69	81	9.1629
cccooooooccc	chr2:55276993-55277273(-)$1	280	132	144	10.3054
fbboooooobb:	chr2:55276878-55277193(-)$1	315	134	146	8.4589
e[aooooooa]e	chr16:29818320-29818640(+)$1	320	225	237	9.7407
dddooooooddd	chr11:5289614-5289894(-)$1	280	167	179	9.5104
b[aooooooa]b	chr22:21272027-21272359(+)$1	332	159	171	9.2325
ggaooooooa]g	chr16:30081117-30081420(+)$1	303	157	169	9.8501
cccooooooccc	chr16:30080038-30080308(+)$1	270	214	226	10.3054
eeeooooooeee	chr19:47290842-47291155(-)$1	313	82	94	9.3326
eeeooooooeee	chr15:75230176-75230486(-)$1	310	152	164	9.3326
eeeooooooeee	chr16:88870116-88870414(+)$1	298	115	127	9.3326
cccooooooccc	chr7:6523601-6523898(-)$1	297	160	172	10.3054
!!aooooooa22	chr19:49611208-49611487(+)$1	279	160	172	9.3792
cccooooooccc	chr19:50354486-50354835(+)$1	349	295	307	10.3054
cccooooooccc	chr11:810132-810381(+)$1	249	104	116	10.3054
dddooooooddd	chr11:61734777-61735183(-)$1	406	355	367	9.5104
cccooooooccc	chr11:5290789-5291008(-)$1	219	203	215	10.3054
cccooooooccc	chr1:8925282-8925572(-)$1	290	242	254	10.3054
dddooooooddd	chr6:34212678-34212944(+)$1	266	235	247	9.5104
dddooooooddd	chr2:55277114-55277355(-)$1	241	151	163	9.5104
fbboooooobb]	chr16:30079896-30080121(+)$1	225	160	172	9.3440
gggooooooggg	chr7:5569062-5569360(-)$1	298	239	251	9.6368
fffoooooofff	chr7:5568726-5568985(-)$1	259	208	220	9.1117
cccooooooccc	chr2:55276819-55277078(-)$1	259	124	136	10.3054

#otherMatches

#Seq PSSM
ACCAGAGCAGGU	chr16:30079864-30080096(+)$1	232	192	204	9.3440
CAAUAAAGUUUG	chr8:146015122-146015411(-)$1	289	235	247	10.3054
CGCCAAGCAGCG	chr1:35657975-35658214(-)$1	239	69	81	9.6368
AGCUGCUGUGCA	chr2:97543590-97543873(-)$1	283	104	116	9.4091
UGAACUUCAUCA	chr19:3983012-3983303(-)$1	291	52	64	9.3326
GCUACUACCAGC	chr16:30078454-30078695(+)$1	241	106	118	9.5104
gcccggcccggc	chr16:58231517-58231871(-)$1	354	233	245	10.3054
CCUCCUCCCAGA	chr19:1241671-1242017(+)$1	346	69	81	9.1629
ccgucgccccgg	chr2:55276993-55277273(-)$1	280	132	144	10.3054
CGCAGUCUCGCC	chr2:55276878-55277193(-)$1	315	134	146	8.4589
ccgcgccccccg	chr16:29818320-29818640(+)$1	320	225	237	9.7407
CCAUUGCCCUGG	chr11:5289614-5289894(-)$1	280	167	179	9.5104
CCGCCCCUACCG	chr22:21272027-21272359(+)$1	332	159	171	9.2325
CUCUGCCCUGAA	chr16:30081117-30081420(+)$1	303	157	169	9.8501
UGGAAAAUGCCA	chr16:30080038-30080308(+)$1	270	214	226	10.3054
AGCCAACCUGCU	chr19:47290842-47291155(-)$1	313	82	94	9.3326
CGCUGCGCUGUG	chr15:75230176-75230486(-)$1	310	152	164	9.3326
CCGCCGCCAUGG	chr16:88870116-88870414(+)$1	298	115	127	9.3326
cccagccccggg	chr7:6523601-6523898(-)$1	297	160	172	10.3054
AUGAUGGGCCUC	chr19:49611208-49611487(+)$1	279	160	172	9.3792
GCCUUCCACGGC	chr19:50354486-50354835(+)$1	349	295	307	10.3054
GCGCUACGUCGC	chr11:810132-810381(+)$1	249	104	116	10.3054
CAGAUCAACCUG	chr11:61734777-61735183(-)$1	406	355	367	9.5104
GCAAGAAGGUGC	chr11:5290789-5291008(-)$1	219	203	215	10.3054
GAGUGCCAUCUC	chr1:8925282-8925572(-)$1	290	242	254	10.3054
CAUACACACAUG	chr6:34212678-34212944(+)$1	266	235	247	9.5104
UGAUGGACUUCG	chr2:55277114-55277355(-)$1	241	151	163	9.5104
ACCAGAGCAGGU	chr16:30079896-30080121(+)$1	225	160	172	9.3440
GGCAAGGGCGCU	chr7:5569062-5569360(-)$1	298	239	251	9.6368
ACCUCUUCUGGU	chr7:5568726-5568985(-)$1	259	208	220	9.1117
gccagccccggc	chr2:55276819-55277078(-)$1	259	124	136	10.3054

#DB
(((......)).	chr16:30079864-30080096(+)$1	1	192	204	9.3440
(((......)))	chr8:146015122-146015411(-)$1	1	235	247	10.3054
(((......)))	chr1:35657975-35658214(-)$1	1	69	81	9.6368
(((......)).	chr2:97543590-97543873(-)$1	1	104	116	9.4091
(((......)))	chr19:3983012-3983303(-)$1	1	52	64	9.3326
(((......)))	chr16:30078454-30078695(+)$1	1	106	118	9.5104
(((......)))	chr16:58231517-58231871(-)$1	1	233	245	10.3054
.((......)).	chr19:1241671-1242017(+)$1	1	69	81	9.1629
(((......)))	chr2:55276993-55277273(-)$1	1	132	144	10.3054
)((......)).	chr2:55276878-55277193(-)$1	1	134	146	8.4589
(.(......).)	chr16:29818320-29818640(+)$1	1	225	237	9.7407
(((......)))	chr11:5289614-5289894(-)$1	1	167	179	9.5104
(.(......).)	chr22:21272027-21272359(+)$1	1	159	171	9.2325
(((......).)	chr16:30081117-30081420(+)$1	1	157	169	9.8501
(((......)))	chr16:30080038-30080308(+)$1	1	214	226	10.3054
(((......)))	chr19:47290842-47291155(-)$1	1	82	94	9.3326
(((......)))	chr15:75230176-75230486(-)$1	1	152	164	9.3326
(((......)))	chr16:88870116-88870414(+)$1	1	115	127	9.3326
(((......)))	chr7:6523601-6523898(-)$1	1	160	172	10.3054
..(......)..	chr19:49611208-49611487(+)$1	1	160	172	9.3792
(((......)))	chr19:50354486-50354835(+)$1	1	295	307	10.3054
(((......)))	chr11:810132-810381(+)$1	1	104	116	10.3054
(((......)))	chr11:61734777-61735183(-)$1	1	355	367	9.5104
(((......)))	chr11:5290789-5291008(-)$1	1	203	215	10.3054
(((......)))	chr1:8925282-8925572(-)$1	1	242	254	10.3054
(((......)))	chr6:34212678-34212944(+)$1	1	235	247	9.5104
(((......)))	chr2:55277114-55277355(-)$1	1	151	163	9.5104
(((......)).	chr16:30079896-30080121(+)$1	1	160	172	9.3440
(((......)))	chr7:5569062-5569360(-)$1	1	239	251	9.6368
(((......)))	chr7:5568726-5568985(-)$1	1	208	220	9.1117
(((......)))	chr2:55276819-55277078(-)$1	1	124	136	10.3054

#PSSM
c : 0.32	e : 0.16	d : 0.16	f : 0.12	g : 0.12	! : 0.06	b : 0.03	
c : 0.32	b : 0.16	d : 0.16	e : 0.12	g : 0.09	[ : 0.06	! : 0.03	f : 0.03	
c : 0.32	b : 0.16	d : 0.16	e : 0.12	a : 0.12	g : 0.06	f : 0.03	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.32	b : 0.16	d : 0.16	e : 0.12	a : 0.12	g : 0.06	f : 0.03	
c : 0.32	b : 0.16	d : 0.16	e : 0.12	] : 0.09	g : 0.06	2 : 0.03	f : 0.03	
c : 0.32	e : 0.16	d : 0.16	] : 0.09	g : 0.09	2 : 0.06	: : 0.03	b : 0.03	f : 0.03	

#score	300.24523591266757
#seq	31
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_UTR_m3_run2.txt

#BEAR
gggggggmmmmggggggg:	chr1:245007914-245008169(-)$1	255	7	26	7.0314
hhhhhhhhlllhhhhhhhh	chr19:37035966-37036222(-)$1	256	104	123	12.3597
iiiiiooooooiiiiiiii	chr19:58372797-58373060(+)$1	263	86	105	8.2737
ggg[cccmmmmcccggggg	chr6:31725362-31725621(+)$1	259	48	67	8.2214
hhhhhhhoooooohhhhhh	chr17:17115619-17115877(-)$1	258	94	113	11.2431
====[bbmmmmbb======	chr12:11183763-11184048(-)$1	285	183	202	6.0025
eeee[ccclllccc]eeee	chr6:7285555-7285846(-)$1	291	173	192	6.1860
gggggggmmmmgggggggd	chr5:42801524-42801787(-)$1	263	190	209	8.1364
a[cccbbmmmmbb]ccc]a	chr17:7477148-7477415(+)$1	267	60	79	6.3590
hhhhhhhhlllhhhhhhhh	chr22:41324116-41324375(+)$1	259	110	129	12.3597
hhh!!bbmmmmbb22hhhh	chr3:196557672-196557926(+)$1	254	142	161	8.5955
ggggcccmmmmccceeeee	chr20:33933154-33933407(-)$1	253	149	168	6.9388
hhhhhhhhlllhhhhhhhh	chr2:86250644-86250882(-)$1	238	206	225	12.3597
!ccc[bbmmmmbb]ccc]f	chr7:923080-923333(+)$1	253	112	131	6.2330
========lll========	chr19:1272712-1272930(+)$1	218	94	113	6.8994
hhhhhhhhlllhhhhhhhh	chr2:36605862-36606123(+)$1	261	109	128	12.3597
hhhhhhhnnnnnhhhhhhh	chr1:203771899-203772151(+)$1	252	43	62	10.5629
hhhhhhhoooooohhhhhh	chr17:17115677-17115892(-)$1	215	109	128	11.2431
cc22ccc4444hhhhhhhh	chr19:54972072-54972285(+)$1	213	106	125	8.0595
gggggggmmmmggggggg:	chr3:27414420-27414667(-)$1	247	105	124	7.0314
hhhhhhhmmmmhhhhhhhh	chr17:25634704-25634983(+)$1	279	158	177	12.3511
hhhhhhhhlllhhhhhhhh	chr11:61133853-61134110(+)$1	257	107	126	12.3597
hhhhhhhhlllhhhhhhhh	chr4:38945602-38945825(+)$1	223	108	127	12.3597
hhhhhhhmmmmhhhhhhhh	chr19:1272658-1272912(+)$1	254	5	24	12.3511
hhhhhhhhlllhhhhhhhh	chr20:43560099-43560339(+)$1	240	56	75	12.3597
hh!!bboooooobbhhhhh	chr19:50376913-50377166(-)$1	253	74	93	8.3467
e[a[cccmmmmccc]aeee	chr2:192542928-192543188(+)$1	260	133	152	6.6534
hh!!bboooooobb]hhhh	chr12:102110910-102111220(+)$1	310	89	108	7.9859
hhhhhhhhlllhhhhhhhh	chr10:69828134-69828346(-)$1	212	105	124	12.3597
hhhhhhhhlllhhhhhhhh	chr17:66418716-66418975(-)$1	259	108	127	12.3597
ggggggooooooggggggg	chr5:87491924-87492244(-)$1	320	56	75	7.7610
gggggggmmmmggggggg:	chr13:20247146-20247355(+)$1	209	163	182	7.0314
hhhhhhhhlllhhhhhhhh	chr6:149980424-149980699(-)$1	275	107	126	12.3597
ccccc[ammmma]ccc]cc	chr19:8467452-8467687(+)$1	235	40	59	7.1180
hhhhhhhmmmmhhhhhhhh	chr1:146630041-146630280(-)$1	239	86	105	12.3511
=======mmmm========	chr15:93443709-93443983(+)$1	274	239	258	6.5246
ee!!cccmmmmccceeeee	chr16:1830644-1830906(+)$1	262	232	251	6.1676
hhhhhhhhlllhhhhhhhh	chr7:48003353-48003605(-)$1	252	105	124	12.3597
[ccc[bbmmmmbb]ccc]c	chr16:23477142-23477368(-)$1	226	181	200	6.6104
hhhhhhhmmmmhhhhhhhh	chr2:3520092-3520338(-)$1	246	210	229	12.3511
hhhhhhhmmmmhhhhhhhh	chr1:151171022-151171299(+)$1	277	79	98	12.3511
hhhhhhhhlllhhhhhhhh	chr17:7757846-7758110(+)$1	264	170	189	12.3597
hhhhhhhoooooohhhhhh	chr1:236714015-236714229(-)$1	214	184	203	11.2431
hhhhhhhmmmmhhhhhhhh	chr21:45175951-45176204(+)$1	253	179	198	12.3511
hhhhhhoooooohhhhhhh	chr1:236713979-236714215(-)$1	236	171	190	11.2916
hhhhhhhnnnnnhhhhhhh	chr4:1380585-1380836(+)$1	251	117	136	10.5629
cc22ccc4444hhhhhhhh	chr19:54972085-54972299(+)$1	214	93	112	8.0595
hhhhhhhoooooohhhhhh	chr20:39987683-39987947(+)$1	264	233	252	11.2431
cc22ccc4444hhhhhhhh	chr19:54972099-54972331(+)$1	232	79	98	8.0595
hhhhhhhhlllhhhhhhhh	chr15:67486026-67486281(+)$1	255	190	209	12.3597
hhhhhhhnnnnnhhhhhhh	chr10:72637484-72637739(+)$1	255	56	75	10.5629
hhhhhhhhlllhhhhhhhh	chr10:69828093-69828334(-)$1	241	93	112	12.3597

#otherMatches

#Seq PSSM
GAUUAUUGAUUAGUGAUCA	chr1:245007914-245008169(-)$1	255	7	26	7.0314
gauagagccuugcucuguc	chr19:37035966-37036222(-)$1	256	104	123	12.3597
agaggguuuuaccuuuuug	chr19:58372797-58373060(+)$1	263	86	105	8.2737
agacugugagcacaucugg	chr6:31725362-31725621(+)$1	259	48	67	8.2214
auggcaucuugcuaugucg	chr17:17115619-17115877(-)$1	258	94	113	11.2431
AAUGGCUUCAUAGCAUUGG	chr12:11183763-11184048(-)$1	285	183	202	6.0025
gccucacaaagugucaggc	chr6:7285555-7285846(-)$1	291	173	192	6.1860
GGUGUUGAGACUAACAUCA	chr5:42801524-42801787(-)$1	263	190	209	8.1364
AGCGCGCUGGUGCUGCGGU	chr17:7477148-7477415(+)$1	267	60	79	6.3590
gacagagucucgcucuguc	chr22:41324116-41324375(+)$1	259	110	129	12.3597
ugacaugaucucagcucac	chr3:196557672-196557926(+)$1	254	142	161	8.5955
ugugacacauuugugggag	chr20:33933154-33933407(-)$1	253	149	168	6.9388
uaugaggugccaucucgug	chr2:86250644-86250882(-)$1	238	206	225	12.3597
AGAGAGCACCAGCGCUCAC	chr7:923080-923333(+)$1	253	112	131	6.2330
AGUGGGUGCCCCACUCACU	chr19:1272712-1272930(+)$1	218	94	113	6.8994
gacggagucucacucuguc	chr2:36605862-36606123(+)$1	261	109	128	12.3597
UCUCCCAGUAGUUGGGAGA	chr1:203771899-203772151(+)$1	252	43	62	10.5629
auggcaucuugcuaugucg	chr17:17115677-17115892(-)$1	215	109	128	11.2431
GCCGUGGACUUGGGUUGUA	chr19:54972072-54972285(+)$1	213	106	125	8.0595
UCUUCCCCAUGGGGGAGAU	chr3:27414420-27414667(-)$1	247	105	124	7.0314
UCUGGCUACCGGGCUGGGG	chr17:25634704-25634983(+)$1	279	158	177	12.3511
gacagagucucgcucuguc	chr11:61133853-61134110(+)$1	257	107	126	12.3597
gacagagucucacucuguc	chr4:38945602-38945825(+)$1	223	108	127	12.3597
UUUCAAAACAUUUUGAAAA	chr19:1272658-1272912(+)$1	254	5	24	12.3511
gacagagucuugcucuguu	chr20:43560099-43560339(+)$1	240	56	75	12.3597
agcagaugaaauuCCuuuu	chr19:50376913-50377166(-)$1	253	74	93	8.3467
GUCGCCCGGUUGGGAGCGG	chr2:192542928-192543188(+)$1	260	133	152	6.6534
AUAAUCUACUUUGAGGUGA	chr12:102110910-102111220(+)$1	310	89	108	7.9859
aacggagucuugcucuguu	chr10:69828134-69828346(-)$1	212	105	124	12.3597
gauagagucucacucuguc	chr17:66418716-66418975(-)$1	259	108	127	12.3597
CUGUUACACAAAUAACAGU	chr5:87491924-87492244(-)$1	320	56	75	7.7610
ACAGCCAAACCUGGCUGUC	chr13:20247146-20247355(+)$1	209	163	182	7.0314
gacagggucucacucuguc	chr6:149980424-149980699(-)$1	275	107	126	12.3597
AGGGUGGAACACGGCCUCU	chr19:8467452-8467687(+)$1	235	40	59	7.1180
UCUUUCAUCCUUGAAAGAU	chr1:146630041-146630280(-)$1	239	86	105	12.3511
UUUCGUUUUUUAACGGAGG	chr15:93443709-93443983(+)$1	274	239	258	6.5246
gcacgugccaccacgccug	chr16:1830644-1830906(+)$1	262	232	251	6.1676
gacggagucucacucuguc	chr7:48003353-48003605(-)$1	252	105	124	12.3597
cagguucaagcgauucucg	chr16:23477142-23477368(-)$1	226	181	200	6.6104
ggcguggaccaccaugccu	chr2:3520092-3520338(-)$1	246	210	229	12.3511
AAGGGGCGUUCGCUCCUUU	chr1:151171022-151171299(+)$1	277	79	98	12.3511
CUCUGCCCCAGGGGCAGAG	chr17:7757846-7758110(+)$1	264	170	189	12.3597
GCUUGUGCUGCCACAUAAG	chr1:236714015-236714229(-)$1	214	184	203	11.2431
GUCACAGAAAUUUGUGAUC	chr21:45175951-45176204(+)$1	253	179	198	12.3511
CUUGUGCUGCCACAUAAGC	chr1:236713979-236714215(-)$1	236	171	190	11.2916
cacuguguugcccacggug	chr4:1380585-1380836(+)$1	251	117	136	10.5629
GCCGUGGACUUGGGUUGUA	chr19:54972085-54972299(+)$1	214	93	112	8.0595
aggcguguaccaccacgcc	chr20:39987683-39987947(+)$1	264	233	252	11.2431
GCCGUGGACUUGGGUUGUA	chr19:54972099-54972331(+)$1	232	79	98	8.0595
GUGUGUGCAUGGCAUGCAC	chr15:67486026-67486281(+)$1	255	190	209	12.3597
GGAGGCUUUUUCAGCCUUC	chr10:72637484-72637739(+)$1	255	56	75	10.5629
aacggagucuugcucuguu	chr10:69828093-69828334(-)$1	241	93	112	12.3597

#DB
(((((((....))))))).	chr1:245007914-245008169(-)$1	1	7	26	7.0314
((((((((...))))))))	chr19:37035966-37036222(-)$1	1	104	123	12.3597
(((((......))))))))	chr19:58372797-58373060(+)$1	1	86	105	8.2737
(((.(((....))))))))	chr6:31725362-31725621(+)$1	1	48	67	8.2214
(((((((......))))))	chr17:17115619-17115877(-)$1	1	94	113	11.2431
((((.((....))))))))	chr12:11183763-11184048(-)$1	1	183	202	6.0025
((((.(((...))).))))	chr6:7285555-7285846(-)$1	1	173	192	6.1860
(((((((....))))))))	chr5:42801524-42801787(-)$1	1	190	209	8.1364
(.(((((....)).))).)	chr17:7477148-7477415(+)$1	1	60	79	6.3590
((((((((...))))))))	chr22:41324116-41324375(+)$1	1	110	129	12.3597
(((..((....))..))))	chr3:196557672-196557926(+)$1	1	142	161	8.5955
))))(((....)))(((((	chr20:33933154-33933407(-)$1	1	149	168	6.9388
((((((((...))))))))	chr2:86250644-86250882(-)$1	1	206	225	12.3597
.(((.((....)).))).)	chr7:923080-923333(+)$1	1	112	131	6.2330
((((((((...))))))))	chr19:1272712-1272930(+)$1	1	94	113	6.8994
((((((((...))))))))	chr2:36605862-36606123(+)$1	1	109	128	12.3597
(((((((.....)))))))	chr1:203771899-203772151(+)$1	1	43	62	10.5629
(((((((......))))))	chr17:17115677-17115892(-)$1	1	109	128	11.2431
))..)))....))))))))	chr19:54972072-54972285(+)$1	1	106	125	8.0595
(((((((....))))))).	chr3:27414420-27414667(-)$1	1	105	124	7.0314
(((((((....))))))))	chr17:25634704-25634983(+)$1	1	158	177	12.3511
((((((((...))))))))	chr11:61133853-61134110(+)$1	1	107	126	12.3597
((((((((...))))))))	chr4:38945602-38945825(+)$1	1	108	127	12.3597
(((((((....))))))))	chr19:1272658-1272912(+)$1	1	5	24	12.3511
((((((((...))))))))	chr20:43560099-43560339(+)$1	1	56	75	12.3597
((..((......)))))))	chr19:50376913-50377166(-)$1	1	74	93	8.3467
(.(.(((....))).))))	chr2:192542928-192543188(+)$1	1	133	152	6.6534
((..((......)).))))	chr12:102110910-102111220(+)$1	1	89	108	7.9859
((((((((...))))))))	chr10:69828134-69828346(-)$1	1	105	124	12.3597
((((((((...))))))))	chr17:66418716-66418975(-)$1	1	108	127	12.3597
((((((......)))))))	chr5:87491924-87492244(-)$1	1	56	75	7.7610
(((((((....))))))).	chr13:20247146-20247355(+)$1	1	163	182	7.0314
((((((((...))))))))	chr6:149980424-149980699(-)$1	1	107	126	12.3597
(((((.(....).))).))	chr19:8467452-8467687(+)$1	1	40	59	7.1180
(((((((....))))))))	chr1:146630041-146630280(-)$1	1	86	105	12.3511
(((((((....))))))))	chr15:93443709-93443983(+)$1	1	239	258	6.5246
((..(((....))))))))	chr16:1830644-1830906(+)$1	1	232	251	6.1676
((((((((...))))))))	chr7:48003353-48003605(-)$1	1	105	124	12.3597
.(((.((....)).))).)	chr16:23477142-23477368(-)$1	1	181	200	6.6104
(((((((....))))))))	chr2:3520092-3520338(-)$1	1	210	229	12.3511
(((((((....))))))))	chr1:151171022-151171299(+)$1	1	79	98	12.3511
((((((((...))))))))	chr17:7757846-7758110(+)$1	1	170	189	12.3597
(((((((......))))))	chr1:236714015-236714229(-)$1	1	184	203	11.2431
(((((((....))))))))	chr21:45175951-45176204(+)$1	1	179	198	12.3511
((((((......)))))))	chr1:236713979-236714215(-)$1	1	171	190	11.2916
(((((((.....)))))))	chr4:1380585-1380836(+)$1	1	117	136	10.5629
))..)))....))))))))	chr19:54972085-54972299(+)$1	1	93	112	8.0595
(((((((......))))))	chr20:39987683-39987947(+)$1	1	233	252	11.2431
))..)))....))))))))	chr19:54972099-54972331(+)$1	1	79	98	8.0595
((((((((...))))))))	chr15:67486026-67486281(+)$1	1	190	209	12.3597
(((((((.....)))))))	chr10:72637484-72637739(+)$1	1	56	75	10.5629
((((((((...))))))))	chr10:69828093-69828334(-)$1	1	93	112	12.3597

#PSSM
h : 0.59	g : 0.13	c : 0.07	= : 0.05	e : 0.05	i : 0.01	a : 0.01	! : 0.01	[ : 0.01	
h : 0.59	g : 0.13	c : 0.11	= : 0.05	e : 0.03	[ : 0.03	i : 0.01	
h : 0.55	g : 0.13	c : 0.07	= : 0.05	2 : 0.05	! : 0.05	i : 0.01	e : 0.01	a : 0.01	
h : 0.53	g : 0.11	c : 0.07	! : 0.07	= : 0.05	2 : 0.05	[ : 0.03	i : 0.01	e : 0.01	
h : 0.53	c : 0.17	g : 0.09	[ : 0.07	= : 0.03	b : 0.03	i : 0.01	! : 0.01	
h : 0.53	c : 0.15	b : 0.13	g : 0.09	= : 0.03	o : 0.01	[ : 0.01	
h : 0.51	c : 0.15	o : 0.09	b : 0.09	g : 0.07	= : 0.03	a : 0.01	
m : 0.40	h : 0.26	o : 0.17	n : 0.05	4 : 0.05	c : 0.01	= : 0.01	
m : 0.40	l : 0.30	o : 0.17	n : 0.05	4 : 0.05	
m : 0.40	l : 0.30	o : 0.17	n : 0.05	4 : 0.05	
m : 0.40	l : 0.30	o : 0.17	n : 0.05	4 : 0.05	
h : 0.44	o : 0.15	c : 0.09	b : 0.09	g : 0.07	n : 0.05	= : 0.03	i : 0.01	a : 0.01	
h : 0.51	b : 0.13	g : 0.09	c : 0.09	o : 0.07	= : 0.03	i : 0.01	] : 0.01	
h : 0.59	c : 0.11	g : 0.09	= : 0.05	] : 0.05	b : 0.03	i : 0.01	2 : 0.01	
h : 0.61	g : 0.11	c : 0.07	= : 0.05	] : 0.05	e : 0.03	i : 0.01	2 : 0.01	
h : 0.65	g : 0.11	c : 0.07	= : 0.05	e : 0.05	i : 0.01	a : 0.01	
h : 0.65	g : 0.11	e : 0.07	= : 0.05	c : 0.05	i : 0.01	] : 0.01	
h : 0.65	g : 0.11	e : 0.07	= : 0.05	] : 0.05	i : 0.01	c : 0.01	
h : 0.65	e : 0.07	: : 0.05	= : 0.05	g : 0.03	c : 0.03	i : 0.01	d : 0.01	a : 0.01	f : 0.01	

#score	509.3836932435635
#seq	52
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_UTR_m3_run1.txt

#BEAR
d!!cccnnnnnccc22d	chr22:50013599-50013825(-)$1	226	8	25	10.5256
======nnnnn======	chr16:448071-448326(+)$1	255	14	31	10.8114
aeeeeennnnneeeee:	chr3:41265868-41266121(+)$1	253	216	233	10.0251
iiiiiinnnnniiiiii	chr1:27105410-27105647(+)$1	237	21	38	10.4227
[eeeeennnnneeeee]	chr17:80558985-80559295(+)$1	310	156	173	11.0480
c!!cccnnnnnccc22c	chr8:145690344-145690617(-)$1	273	98	115	10.6947
eeecccnnnnnccc333	chr16:89627220-89627436(+)$1	216	146	163	11.0136
Eeeeeennnnneeeeef	chr7:99755458-99755721(-)$1	263	73	90	10.0242
iiiiiinnnnniiiiii	chr14:74206823-74207111(-)$1	288	226	243	10.4227
ggggggnnnnngggggg	chr21:38459403-38459662(+)$1	259	1	18	10.4241
ee[cccnnnnnccceee	chr3:129150291-129150572(-)$1	281	146	163	10.8376
b"""bbnnnnnbb333b	chr16:10481109-10481378(+)$1	269	193	210	10.2731
[eeeeennnnneeeee]	chr18:9588731-9589002(-)$1	271	250	267	11.0480
ddddbbnnnnnbb]ddd	chr9:139560098-139560368(+)$1	270	164	181	9.6931
iiiiiinnnnniiiiii	chr14:20825675-20825926(+)$1	251	110	127	10.4227
[eeeeennnnneeeee2	chrX:19375665-19375910(+)$1	245	79	96	10.7770
####bbnnnnnbb22==	chr17:79479291-79479565(-)$1	274	105	122	10.1278
dd!!bbnnnnnbb22dd	chr19:40742173-40742451(-)$1	278	158	175	10.0037
bb[cccnnnnnccc]bb	chr1:38274068-38274347(+)$1	279	142	159	10.0299
####bbnnnnnbb333f	chr1:114447282-114447548(-)$1	266	138	155	10.4781
dd[cccnnnnnccc]dd	chr1:155650066-155650322(-)$1	256	91	108	10.5766
!eeeeennnnneeeee]	chr16:89862292-89862582(-)$1	290	222	239	11.0183
bb[cccnnnnnccc]bb	chr8:144674989-144675259(-)$1	270	115	132	10.0299
f[ddddnnnnnddddff	chr12:122238112-122238351(-)$1	239	73	90	9.9098
dd[cccnnnnnccc]dd	chr11:122929974-122930184(-)$1	210	158	175	10.5766
ffffffnnnnnffffff	chr11:62609009-62609231(-)$1	222	17	34	10.0642
:eeeeennnnneeeee:	chr17:7126985-7127243(+)$1	258	211	228	9.1646
ffffffnnnnnffffff	chr12:6715471-6715770(-)$1	299	27	44	10.0642
ddddddnnnnndddd]d	chr1:35643488-35643738(-)$1	250	152	169	9.5850
[eeeeennnnneeeee]	chr12:62652513-62652778(-)$1	265	202	219	11.0480
ffffffnnnnnffffff	chr17:65353401-65353665(-)$1	264	29	46	10.0642
#a!!bbnnnnnbb22a2	chr15:91446161-91446437(+)$1	276	138	155	10.0844
:eeeeennnnneeeee:	chr1:182360241-182360494(-)$1	253	179	196	9.1646
Eeeeeennnnneeeee:	chr22:50018411-50018668(-)$1	257	155	172	9.1958
dd[cccnnnnnccc]dd	chr11:122929965-122930174(-)$1	209	148	165	10.5766
ff!!bbnnnnnbb22ff	chr19:54972073-54972282(+)$1	209	31	48	10.3855
iiiiiinnnnniiiiii	chr11:75111470-75111683(+)$1	213	30	47	10.4227
b[ddddnnnnndddd]b	chr17:8076675-8076889(-)$1	214	57	74	9.6512
eeeeeennnnneeeee5	chr16:89662735-89663003(+)$1	268	101	118	9.9950
f[ddddnnnnnddddff	chr3:12881709-12881955(-)$1	246	157	174	9.9098
ffffffnnnnnffffff	chr1:1685543-1685797(-)$1	254	102	119	10.0642
ff!!bbnnnnnbbffff	chr11:62378931-62379219(-)$1	288	242	259	10.4093
ffff[annnnna]ffff	chr19:1472222-1472523(-)$1	301	79	96	9.9074
ffffffnnnnnffffff	chr6:31728837-31729090(+)$1	253	53	70	10.0642
"""cccnnnnnccc22d	chr22:50016167-50016411(-)$1	244	164	181	10.4325
ddddbbnnnnnbb333d	chr14:105935641-105935926(+)$1	285	44	61	10.1954
fff[bbnnnnnbb]fff	chr4:10117690-10118007(-)$1	317	160	177	10.2946
b[ddddnnnnndddd]b	chr7:5569442-5569700(-)$1	258	208	225	9.6512
[a[cccnnnnnccc]ad	chr16:89788792-89789060(+)$1	268	17	34	10.8240
[eeeeennnnneeeee3	chr14:20917090-20917362(-)$1	272	122	139	11.0220
ffffffnnnnnffffff	chr16:1363846-1364140(+)$1	294	85	102	10.0642
ggggggnnnnngggggg	chr17:72859239-72859503(-)$1	264	85	102	10.4241
a[ddddnnnnndddd]a	chr11:57193109-57193351(-)$1	242	153	170	9.9178
eee[bbnnnnnbbeeee	chr19:49993175-49993384(+)$1	209	176	193	10.5098
beeeeennnnneeeee]	chr7:143079198-143079506(+)$1	308	160	177	10.8190
dd[cccnnnnnccc]dd	chr11:122929984-122930187(-)$1	203	161	178	10.5766
ffffbbnnnnnbb]fff	chr19:1421011-1421273(+)$1	262	68	85	10.1881
deeeeennnnneeeee]	chr9:140260958-140261229(-)$1	271	70	87	10.8603
ffffffnnnnnffffff	chr19:1271400-1271667(+)$1	267	197	214	10.0642
!!ddddnnnnndddd44	chr16:89787355-89787651(+)$1	296	219	236	9.9567
ccc[bbnnnnnbb]ccc	chr15:89877006-89877257(-)$1	251	165	182	10.0651
ccccccnnnnnccc]cc	chr19:15512258-15512572(-)$1	314	41	58	10.5644
eeeebbnnnnnbb22ee	chr20:42088270-42088546(+)$1	276	197	214	10.3018
deeeeennnnneeeee]	chr12:57917648-57917935(+)$1	287	173	190	10.8603
:eeeeennnnneeeeeG	chr19:49993184-49993404(+)$1	220	31	48	9.5009

#otherMatches

#Seq PSSM
agugucacagagaccau	chr22:50013599-50013825(-)$1	226	8	25	10.5256
UCUGUGGGACAUACAGG	chr16:448071-448326(+)$1	255	14	31	10.8114
CAGUCUUACCUGGACUC	chr3:41265868-41266121(+)$1	253	216	233	10.0251
UUGGGGAGGUCUCUCAA	chr1:27105410-27105647(+)$1	237	21	38	10.4227
GAGAGCGUGGGGUUCUG	chr17:80558985-80559295(+)$1	310	156	173	11.0480
CCCCCGUUUCCCGGCUG	chr8:145690344-145690617(-)$1	273	98	115	10.6947
CAUGGCGCCCAGCCGGA	chr16:89627220-89627436(+)$1	216	146	163	11.0136
AGGCAGAUGAACUGCCG	chr7:99755458-99755721(-)$1	263	73	90	10.0242
AAGAGCCAGCAGUUCUU	chr14:74206823-74207111(-)$1	288	226	243	10.4227
CGGAGCUCAGUGUUCUG	chr21:38459403-38459662(+)$1	259	1	18	10.4241
UCCAGGUGCACCCUGAA	chr3:129150291-129150572(-)$1	281	146	163	10.8376
AGUGCCUUAUUGGAAAU	chr16:10481109-10481378(+)$1	269	193	210	10.2731
UACUACCUAUUGUGGUU	chr18:9588731-9589002(-)$1	271	250	267	11.0480
UCCGGCGGUGAGUgcgg	chr9:139560098-139560368(+)$1	270	164	181	9.6931
CCAUUUGGCAGGAAUGG	chr14:20825675-20825926(+)$1	251	110	127	10.4227
UAACUGCCUACCGGUUC	chrX:19375665-19375910(+)$1	245	79	96	10.7770
GAGGGCAUUAGGUGGCU	chr17:79479291-79479565(-)$1	274	105	122	10.1278
GCUGGAAAACCUCAUGC	chr19:40742173-40742451(-)$1	278	158	175	10.0037
CCGGCGUGGACCGCGGG	chr1:38274068-38274347(+)$1	279	142	159	10.0299
CACAUCAGGACGAGAAG	chr1:114447282-114447548(-)$1	266	138	155	10.4781
GCUGAUGGAAGAUCUGU	chr1:155650066-155650322(-)$1	256	91	108	10.5766
CAGUCAUACCCUGACUC	chr16:89862292-89862582(-)$1	290	222	239	11.0183
GGCUCAGAUAGUGGUCC	chr8:144674989-144675259(-)$1	270	115	132	10.0299
GCGGGGGGUCGCCCCCU	chr12:122238112-122238351(-)$1	239	73	90	9.9098
GAGCUAUGUACUGGGUU	chr11:122929974-122930184(-)$1	210	158	175	10.5766
guccucuauccgaggac	chr11:62609009-62609231(-)$1	222	17	34	10.0642
ACAGGACGGUCUUCUGC	chr17:7126985-7127243(+)$1	258	211	228	9.1646
GCCUGAGCGGUUCGGGU	chr12:6715471-6715770(-)$1	299	27	44	10.0642
AGUUUCCUUUAGAAAUC	chr1:35643488-35643738(-)$1	250	152	169	9.5850
AAUAUGGAAAACAUAUA	chr12:62652513-62652778(-)$1	265	202	219	11.0480
CUGUGAGUAGUUUACAG	chr17:65353401-65353665(-)$1	264	29	46	10.0642
GGGGCCAGGAAGGGACA	chr15:91446161-91446437(+)$1	276	138	155	10.0844
GUAACGGUGAGCGUUGU	chr1:182360241-182360494(-)$1	253	179	196	9.1646
CACACCAGGUGGGUGUC	chr22:50018411-50018668(-)$1	257	155	172	9.1958
GAGCUAUGUACUGGGUU	chr11:122929965-122930174(-)$1	209	148	165	10.5766
CUGAGCACCCAGCGAGG	chr19:54972073-54972282(+)$1	209	31	48	10.3855
UGCUGCGUUCUGUGGCA	chr11:75111470-75111683(+)$1	213	30	47	10.4227
aaacgugauuaacgucu	chr17:8076675-8076889(-)$1	214	57	74	9.6512
CGGAUGAUCUCCAUCUC	chr16:89662735-89663003(+)$1	268	101	118	9.9950
GCAGGAAAGCCUCCUUC	chr3:12881709-12881955(-)$1	246	157	174	9.9098
CCUGAGCGUCCCUCGGG	chr1:1685543-1685797(-)$1	254	102	119	10.0642
AGAAGCCCUUCGCCUGC	chr11:62378931-62379219(-)$1	288	242	259	10.4093
CCCACGGCCCACAUGGG	chr19:1472222-1472523(-)$1	301	79	96	9.9074
UCACAGGCCAACUGUGG	chr6:31728837-31729090(+)$1	253	53	70	10.0642
CCCGGUACACCACUCAG	chr22:50016167-50016411(-)$1	244	164	181	10.4325
GGCUUGGUUGGCAGAUG	chr14:105935641-105935926(+)$1	285	44	61	10.1954
GCCAGCCUCCCGCAGGU	chr4:10117690-10118007(-)$1	317	160	177	10.2946
CCUGGCUUCCUGCCGCG	chr7:5569442-5569700(-)$1	258	208	225	9.6512
AGCCGCUUGCUGUGUCC	chr16:89788792-89789060(+)$1	268	17	34	10.8240
UUAUGCUUCCUGCAUAU	chr14:20917090-20917362(-)$1	272	122	139	11.0220
GCCUGCCUGCUGCGGGC	chr16:1363846-1364140(+)$1	294	85	102	10.0642
GGUGGUAUCCAGCCACC	chr17:72859239-72859503(-)$1	264	85	102	10.4241
UGUGCUCAUUUGGCAGG	chr11:57193109-57193351(-)$1	242	153	170	9.9178
UUAUGUAUUAGGCUAGU	chr19:49993175-49993384(+)$1	209	176	193	10.5098
CUCCCCUUGCUGGGGAU	chr7:143079198-143079506(+)$1	308	160	177	10.8190
GAGCUAUGUACUGGGUU	chr11:122929984-122930187(-)$1	203	161	178	10.5766
CUCCGCAGCUCGCGGGA	chr19:1421011-1421273(+)$1	262	68	85	10.1881
CCCUCUGGGUUGGAGGU	chr9:140260958-140261229(-)$1	271	70	87	10.8603
GGGGCUACGGAGGCUCC	chr19:1271400-1271667(+)$1	267	197	214	10.0642
CCUCUCUACGUGAGACC	chr16:89787355-89787651(+)$1	296	219	236	9.9567
agagacaggacgugucu	chr15:89877006-89877257(-)$1	251	165	182	10.0651
CCUCCCAACCAGGGCAG	chr19:15512258-15512572(-)$1	314	41	58	10.5644
CUGUUCGUACAGAAUAC	chr20:42088270-42088546(+)$1	276	197	214	10.3018
AGCUGGUGGCCCCGGCU	chr12:57917648-57917935(+)$1	287	173	190	10.8603
CCGCUGGAGGUCAGUGA	chr19:49993184-49993404(+)$1	220	31	48	9.5009

#DB
(..(((.....)))..)	chr22:50013599-50013825(-)$1	1	8	25	10.5256
((((((.....))))))	chr16:448071-448326(+)$1	1	14	31	10.8114
)(((((.....))))).	chr3:41265868-41266121(+)$1	1	216	233	10.0251
((((((.....))))))	chr1:27105410-27105647(+)$1	1	21	38	10.4227
.(((((.....))))).	chr17:80558985-80559295(+)$1	1	156	173	11.0480
(..(((.....)))..)	chr8:145690344-145690617(-)$1	1	98	115	10.6947
((((((.....)))...	chr16:89627220-89627436(+)$1	1	146	163	11.0136
((((((.....)))))(	chr7:99755458-99755721(-)$1	1	73	90	10.0242
((((((.....))))))	chr14:74206823-74207111(-)$1	1	226	243	10.4227
((((((.....))))))	chr21:38459403-38459662(+)$1	1	1	18	10.4241
((.(((.....))))))	chr3:129150291-129150572(-)$1	1	146	163	10.8376
(...((.....))...)	chr16:10481109-10481378(+)$1	1	193	210	10.2731
.(((((.....))))).	chr18:9588731-9589002(-)$1	1	250	267	11.0480
((((((.....)).)))	chr9:139560098-139560368(+)$1	1	164	181	9.6931
((((((.....))))))	chr14:20825675-20825926(+)$1	1	110	127	10.4227
.(((((.....))))).	chrX:19375665-19375910(+)$1	1	79	96	10.7770
....((.....))..))	chr17:79479291-79479565(-)$1	1	105	122	10.1278
((..((.....))..))	chr19:40742173-40742451(-)$1	1	158	175	10.0037
((.(((.....))).))	chr1:38274068-38274347(+)$1	1	142	159	10.0299
....((.....))...)	chr1:114447282-114447548(-)$1	1	138	155	10.4781
((.(((.....))).))	chr1:155650066-155650322(-)$1	1	91	108	10.5766
.(((((.....))))).	chr16:89862292-89862582(-)$1	1	222	239	11.0183
((.(((.....))).))	chr8:144674989-144675259(-)$1	1	115	132	10.0299
(.((((.....))))))	chr12:122238112-122238351(-)$1	1	73	90	9.9098
((.(((.....))).))	chr11:122929974-122930184(-)$1	1	158	175	10.5766
((((((.....))))))	chr11:62609009-62609231(-)$1	1	17	34	10.0642
.(((((.....))))).	chr17:7126985-7127243(+)$1	1	211	228	9.1646
((((((.....))))))	chr12:6715471-6715770(-)$1	1	27	44	10.0642
((((((.....)))).)	chr1:35643488-35643738(-)$1	1	152	169	9.5850
.(((((.....))))).	chr12:62652513-62652778(-)$1	1	202	219	11.0480
((((((.....))))))	chr17:65353401-65353665(-)$1	1	29	46	10.0642
.(..((.....))..).	chr15:91446161-91446437(+)$1	1	138	155	10.0844
.(((((.....))))).	chr1:182360241-182360494(-)$1	1	179	196	9.1646
((((((.....))))).	chr22:50018411-50018668(-)$1	1	155	172	9.1958
((.(((.....))).))	chr11:122929965-122930174(-)$1	1	148	165	10.5766
((..((.....))..))	chr19:54972073-54972282(+)$1	1	31	48	10.3855
((((((.....))))))	chr11:75111470-75111683(+)$1	1	30	47	10.4227
(.((((.....)))).)	chr17:8076675-8076889(-)$1	1	57	74	9.6512
((((((.....))))).	chr16:89662735-89663003(+)$1	1	101	118	9.9950
(.((((.....))))))	chr3:12881709-12881955(-)$1	1	157	174	9.9098
((((((.....))))))	chr1:1685543-1685797(-)$1	1	102	119	10.0642
((..((.....))))))	chr11:62378931-62379219(-)$1	1	242	259	10.4093
((((.(.....).))))	chr19:1472222-1472523(-)$1	1	79	96	9.9074
((((((.....))))))	chr6:31728837-31729090(+)$1	1	53	70	10.0642
...(((.....)))..)	chr22:50016167-50016411(-)$1	1	164	181	10.4325
((((((.....))...)	chr14:105935641-105935926(+)$1	1	44	61	10.1954
(((.((.....)).)))	chr4:10117690-10118007(-)$1	1	160	177	10.2946
(.((((.....)))).)	chr7:5569442-5569700(-)$1	1	208	225	9.6512
.(.(((.....))).))	chr16:89788792-89789060(+)$1	1	17	34	10.8240
.(((((.....))))).	chr14:20917090-20917362(-)$1	1	122	139	11.0220
((((((.....))))))	chr16:1363846-1364140(+)$1	1	85	102	10.0642
((((((.....))))))	chr17:72859239-72859503(-)$1	1	85	102	10.4241
(.((((.....)))).)	chr11:57193109-57193351(-)$1	1	153	170	9.9178
(((.((.....))))))	chr19:49993175-49993384(+)$1	1	176	193	10.5098
((((((.....))))).	chr7:143079198-143079506(+)$1	1	160	177	10.8190
((.(((.....))).))	chr11:122929984-122930187(-)$1	1	161	178	10.5766
((((((.....)).)))	chr19:1421011-1421273(+)$1	1	68	85	10.1881
((((((.....))))).	chr9:140260958-140261229(-)$1	1	70	87	10.8603
((((((.....))))))	chr19:1271400-1271667(+)$1	1	197	214	10.0642
..((((.....))))..	chr16:89787355-89787651(+)$1	1	219	236	9.9567
(((.((.....)).)))	chr15:89877006-89877257(-)$1	1	165	182	10.0651
((((((.....))).))	chr19:15512258-15512572(-)$1	1	41	58	10.5644
((((((.....))..))	chr20:42088270-42088546(+)$1	1	197	214	10.3018
((((((.....))))).	chr12:57917648-57917935(+)$1	1	173	190	10.8603
.(((((.....))))))	chr19:49993184-49993404(+)$1	1	31	48	9.5009

#PSSM
f : 0.21	d : 0.16	[ : 0.09	b : 0.09	e : 0.07	i : 0.06	c : 0.04	# : 0.04	: : 0.04	a : 0.03	E : 0.03	g : 0.03	! : 0.03	= : 0.01	" : 0.01	
e : 0.30	f : 0.18	d : 0.12	[ : 0.07	i : 0.06	! : 0.04	g : 0.03	" : 0.03	# : 0.03	b : 0.03	a : 0.03	c : 0.03	= : 0.01	
e : 0.29	f : 0.15	d : 0.13	[ : 0.12	! : 0.09	i : 0.06	g : 0.03	" : 0.03	# : 0.03	c : 0.03	= : 0.01	
e : 0.26	c : 0.20	d : 0.13	f : 0.13	i : 0.06	! : 0.06	[ : 0.04	g : 0.03	# : 0.03	= : 0.01	" : 0.01	
e : 0.24	b : 0.21	c : 0.20	d : 0.10	f : 0.10	i : 0.06	g : 0.03	= : 0.01	[ : 0.01	
e : 0.24	b : 0.21	c : 0.20	d : 0.10	f : 0.10	i : 0.06	g : 0.03	= : 0.01	a : 0.01	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
e : 0.24	b : 0.21	c : 0.20	d : 0.10	f : 0.10	i : 0.06	g : 0.03	= : 0.01	a : 0.01	
e : 0.24	b : 0.21	c : 0.20	d : 0.10	f : 0.10	i : 0.06	g : 0.03	= : 0.01	] : 0.01	
e : 0.26	c : 0.20	f : 0.13	d : 0.10	2 : 0.07	i : 0.06	] : 0.06	3 : 0.04	g : 0.03	= : 0.01	
e : 0.27	f : 0.16	2 : 0.12	d : 0.12	] : 0.12	i : 0.06	3 : 0.06	g : 0.03	= : 0.01	c : 0.01	
e : 0.29	f : 0.21	d : 0.09	i : 0.06	3 : 0.06	] : 0.06	2 : 0.04	= : 0.03	g : 0.03	b : 0.03	a : 0.03	c : 0.03	4 : 0.01	
f : 0.24	d : 0.16	] : 0.10	b : 0.07	: : 0.06	i : 0.06	c : 0.04	e : 0.04	= : 0.03	3 : 0.03	g : 0.03	2 : 0.03	5 : 0.01	a : 0.01	4 : 0.01	G : 0.01	

#score	668.1320282425189
#seq	65
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_transcript_m2_run2.txt

#BEAR
bb[cccooooooccc]bb	chr19:36139135-36139405(+)$1	270	86	104	11.2048
#eeeeeooooooeeeee5	chr11:5290928-5291136(-)$1	208	165	183	10.3914
ggggggoooooogggggg	chr5:85913657-85913915(+)$1	258	204	222	11.3912
!!ddddooooooddddbb	chr2:27294368-27294613(-)$1	245	114	132	10.2399
ddd!!aooooooa22ddd	chr17:16284307-16284595(+)$1	288	215	233	9.7651
%%%cccooooooccc333	chr19:39109733-39109997(+)$1	264	196	214	9.7574
:eeeeeooooooeeeeeH	chrM:12081-12307(+)$1	226	159	177	9.7188
c[acccooooooccc]a]	chr6:26204757-26205049(+)$1	292	21	39	11.7335
[eeeeeooooooeeeeea	chr12:49524980-49525274(-)$1	294	190	208	11.2371
cc[cccooooooccc]cc	chr14:69864855-69865148(-)$1	293	227	245	11.8156
hhhcccooooooccc]hh	chr2:85132686-85132939(+)$1	253	23	41	10.8689
[eeeeeooooooeeeee]	chr19:18433730-18433995(-)$1	265	154	172	11.3002
ffffffooooooffffff	chr6:75953335-75953601(-)$1	266	96	114	10.6018
cc[cccooooooccc]cc	chr5:132202459-132202692(+)$1	233	105	123	11.8156
b[ddddoooooodddd]b	chr19:47731985-47732287(-)$1	302	203	221	10.1679
b[ddddoooooodddd]b	chr12:131357028-131357263(+)$1	235	41	59	10.1679
dd[cccooooooccc22d	chr1:19923404-19923696(+)$1	292	249	267	11.0888
!a!!bboooooobb22a2	chr6:26158312-26158602(+)$1	290	224	242	10.4319
ee[cccooooooccceee	chr12:111180494-111180746(-)$1	252	99	117	11.6492
ccc[bboooooobbccc:	chr19:39926463-39926688(-)$1	225	11	29	9.8443
HHHcccoooooocccccc	chr9:128003305-128003571(-)$1	266	126	144	9.5153
c!!cccooooooccc22c	chr6:31704109-31704393(-)$1	284	89	107	11.5228
ffffffooooooffffff	chr20:34638645-34638946(-)$1	301	51	69	10.6018
dd!!bboooooobb22dd	chr15:69113078-69113332(-)$1	254	88	106	10.0576
:eeeeeooooooeeeeeB	chr9:86594964-86595225(-)$1	261	211	229	9.5183
[bbcccooooooccc]bb	chr15:78832687-78832980(+)$1	293	70	88	11.0002
ffffffooooooffffff	chr17:4843887-4844221(+)$1	334	249	267	10.6018
bb[cccoooooocccbb:	chr11:63448939-63449226(+)$1	287	183	201	10.0925
[eeeeeooooooeeeee]	chr2:28974686-28975030(+)$1	344	267	285	11.3002
dd[cccooooooccc22d	chr15:64385842-64386171(-)$1	329	119	137	11.0888
eeeebboooooobb]eee	chr1:205719020-205719280(-)$1	260	193	211	10.6926
b[ddddooooooddddbb	chr6:144416512-144416800(-)$1	288	259	277	10.0108
ggggggoooooogggggg	chr1:109642825-109643028(+)$1	203	165	183	11.3912
eee[bboooooobb]eee	chr12:56510871-56511078(+)$1	207	162	180	10.7138
ggggggoooooogggggg	chr12:112846323-112846555(-)$1	232	34	52	11.3912
[cccbboooooobb]ccc	chr12:21807397-21807688(-)$1	291	74	92	10.7486
ffffffooooooffffff	chr1:46769271-46769546(+)$1	275	54	72	10.6018
ggggggoooooogggggg	chr1:109642828-109643031(+)$1	203	162	180	11.3912
eeee[aooooooa]eeee	chr10:7830042-7830320(+)$1	278	194	212	10.8470
ggggggoooooogggggg	chr20:57607210-57607495(-)$1	285	139	157	11.3912
ggggggoooooogggggg	chr11:65769871-65770138(+)$1	267	134	152	11.3912
ffffffooooooffffff	chr3:23959240-23959465(+)$1	225	189	207	10.6018
ggg!!aooooooa22ggg	chr8:126010673-126010976(+)$1	303	275	293	10.7376
fff[bboooooobb]fff	chr22:20104910-20105262(+)$1	352	54	72	10.4994
ggggggoooooogggggg	chr8:74205733-74205936(-)$1	203	15	33	11.3912
!eeeeeooooooeeeee4	chr5:81574037-81574242(-)$1	205	11	29	11.2299
eeecccooooooccc22e	chr14:76070447-76070673(+)$1	226	142	160	11.2171
ccddddoooooodddd]c	chr9:113018606-113018926(-)$1	320	130	148	10.2777
bb[cccooooooccc]bb	chr2:97560688-97560992(-)$1	304	143	161	11.2048
"""cccooooooccchhh	chr3:197676963-197677193(+)$1	230	165	183	11.1073
#eeeeeooooooeeeee5	chr11:5290786-5291006(-)$1	220	35	53	10.3914
:eeeeeooooooeeeeeH	chr6:10723323-10723574(+)$1	251	92	110	9.7188
[eeeeeooooooeeeee]	chr17:7215171-7215419(+)$1	248	20	38	11.3002
d[bbbboooooobb]bb]	chr15:90777004-90777263(-)$1	259	163	181	9.6032
ffffffooooooffffff	chr10:70514835-70515094(+)$1	259	120	138	10.6018
[eeeeeooooooeeeeeb	chr5:68462855-68463201(+)$1	346	269	287	11.1578
dd[cccooooooccc]dd	chr8:74204911-74205132(-)$1	221	117	135	11.3250
b[bbbboooooobb]bb]	chr11:64084824-64085089(-)$1	265	86	104	9.6166

#otherMatches

#Seq PSSM
GGUAGUAGUUCCGCUUCC	chr19:36139135-36139405(+)$1	270	86	104	11.2048
AUUGGGAAAGUCCUCAAG	chr11:5290928-5291136(-)$1	208	165	183	10.3914
CCAGCAGCGGUAUGUUGG	chr5:85913657-85913915(+)$1	258	204	222	11.3912
GGUGGCGUCGGAGCCGAG	chr2:27294368-27294613(-)$1	245	114	132	10.2399
CUUGGGGGGGUGUGAGAG	chr17:16284307-16284595(+)$1	288	215	233	9.7651
AGAGCCAACGUGGGCAAG	chr19:39109733-39109997(+)$1	264	196	214	9.7574
CCAUGUCUAACAACAUGG	chrM:12081-12307(+)$1	226	159	177	9.7188
CAGUCUUCAUUUAGGUCC	chr6:26204757-26205049(+)$1	292	21	39	11.7335
UAUGGUGAGUAAGCCGUG	chr12:49524980-49525274(-)$1	294	190	208	11.2371
AGUCCGAGUCCCCGGCCU	chr14:69864855-69865148(-)$1	293	227	245	11.8156
CCUGCUGCGGCGGGUGAg	chr2:85132686-85132939(+)$1	253	23	41	10.8689
CCGCCGGCACCAUGGUGA	chr19:18433730-18433995(-)$1	265	154	172	11.3002
GCCAUUUUCGUUGGUGGU	chr6:75953335-75953601(-)$1	266	96	114	10.6018
GCCGCCACAAUGGGCCGC	chr5:132202459-132202692(+)$1	233	105	123	11.8156
UUGGGAAAGUUGUCCCCA	chr19:47731985-47732287(-)$1	302	203	221	10.1679
GGGGCCGCCAUGGGCUGC	chr12:131357028-131357263(+)$1	235	41	59	10.1679
CCAGGCUGCGCUGCCCAG	chr1:19923404-19923696(+)$1	292	249	267	11.0888
AGCAGGUCCAUCCCGACA	chr6:26158312-26158602(+)$1	290	224	242	10.4319
GCAGGGGGGGGACccgcc	chr12:111180494-111180746(-)$1	252	99	117	11.6492
AGAAGCCGUAAAGCUCUC	chr19:39926463-39926688(-)$1	225	11	29	9.8443
UGUGGCUGGACUGCCUGC	chr9:128003305-128003571(-)$1	266	126	144	9.5153
UGAUCCAGCCCGGGAGAG	chr6:31704109-31704393(-)$1	284	89	107	11.5228
GAACUGCCAAGUCAGUUC	chr20:34638645-34638946(-)$1	301	51	69	10.6018
CGAUCAGGUUAGUGUGCG	chr15:69113078-69113332(-)$1	254	88	106	10.0576
UUUUCCGCUUGAGGGAGG	chr9:86594964-86595225(-)$1	261	211	229	9.5183
CCAGCGGUUCUGCGCAUG	chr15:78832687-78832980(+)$1	293	70	88	11.0002
GCAGAACUCCGCUUCUGC	chr17:4843887-4844221(+)$1	334	249	267	10.6018
GGCGGCCACUCAGUCCCA	chr11:63448939-63449226(+)$1	287	183	201	10.0925
GUUCCCGCUGCUGGGAAG	chr2:28974686-28975030(+)$1	344	267	285	11.3002
GAAGACCAGGAAGUUGAU	chr15:64385842-64386171(-)$1	329	119	137	11.0888
CAGGUCAGUGCGGAGUCU	chr1:205719020-205719280(-)$1	260	193	211	10.6926
CUGGUGAACCAACACCGC	chr6:144416512-144416800(-)$1	288	259	277	10.0108
UUGAUCUUAUUUGAUCGG	chr1:109642825-109643028(+)$1	203	165	183	11.3912
CCUUGGACAAAACUUAGG	chr12:56510871-56511078(+)$1	207	162	180	10.7138
UGUCUUGUUAGAGAGAUG	chr12:112846323-112846555(-)$1	232	34	52	11.3912
CAGUGCAAAAUGGCAACU	chr12:21807397-21807688(-)$1	291	74	92	10.7486
UCCGGCCAGAUCGCCGGA	chr1:46769271-46769546(+)$1	275	54	72	10.6018
UUGAUCUUAUUUGAUCGG	chr1:109642828-109643031(+)$1	203	162	180	11.3912
UUGCGGGAAGAUCGGCAG	chr10:7830042-7830320(+)$1	278	194	212	10.8470
UUGCCGGCGUCUUGGCGA	chr20:57607210-57607495(-)$1	285	139	157	11.3912
UGGCGGGAGGAACCGUUA	chr11:65769871-65770138(+)$1	267	134	152	11.3912
GCUGGCAGUACCGCCAGC	chr3:23959240-23959465(+)$1	225	189	207	10.6018
GCCAGCGAAACGGGAGGC	chr8:126010673-126010976(+)$1	303	275	293	10.7376
CCAAUAAAGCUGUACUGG	chr22:20104910-20105262(+)$1	352	54	72	10.4994
CGUGGGGCUUCUCUCGCG	chr8:74205733-74205936(-)$1	203	15	33	11.3912
UCCUUGGCUGGGCGGGGC	chr5:81574037-81574242(-)$1	205	11	29	11.2299
guacuuggaugggagaAU	chr14:76070447-76070673(+)$1	226	142	160	11.2171
GCGAGUCUUGAAGCUCUG	chr9:113018606-113018926(-)$1	320	130	148	10.2777
GGGCUGAAGACACAGGCC	chr2:97560688-97560992(-)$1	304	143	161	11.2048
AUAACCGGAGUAGGUUUG	chr3:197676963-197677193(+)$1	230	165	183	11.1073
AUUGGGAAAGUCCUCAAG	chr11:5290786-5291006(-)$1	220	35	53	10.3914
UCGCAGUCAUUCCUGCGG	chr6:10723323-10723574(+)$1	251	92	110	9.7188
CGAGCCUGGCCUGGCUCU	chr17:7215171-7215419(+)$1	248	20	38	11.3002
UCGCCUGUCCAAGGAGCU	chr15:90777004-90777263(-)$1	259	163	181	9.6032
CAUUGCUGAAAUGCAGUG	chr10:70514835-70515094(+)$1	259	120	138	10.6018
ACUGCGAACUAACGCGGC	chr5:68462855-68463201(+)$1	346	269	287	11.1578
UUCCUGCUGUGCCAGAAA	chr8:74204911-74205132(-)$1	221	117	135	11.3250
GCGACAUGAAACUGCUUA	chr11:64084824-64085089(-)$1	265	86	104	9.6166

#DB
((.(((......))).))	chr19:36139135-36139405(+)$1	1	86	104	11.2048
.(((((......))))).	chr11:5290928-5291136(-)$1	1	165	183	10.3914
((((((......))))))	chr5:85913657-85913915(+)$1	1	204	222	11.3912
..((((......))))))	chr2:27294368-27294613(-)$1	1	114	132	10.2399
(((..(......)..)))	chr17:16284307-16284595(+)$1	1	215	233	9.7651
...(((......)))...	chr19:39109733-39109997(+)$1	1	196	214	9.7574
.(((((......))))))	chrM:12081-12307(+)$1	1	159	177	9.7188
(.((((......))).).	chr6:26204757-26205049(+)$1	1	21	39	11.7335
.(((((......))))))	chr12:49524980-49525274(-)$1	1	190	208	11.2371
((.(((......))).))	chr14:69864855-69865148(-)$1	1	227	245	11.8156
((((((......))).))	chr2:85132686-85132939(+)$1	1	23	41	10.8689
.(((((......))))).	chr19:18433730-18433995(-)$1	1	154	172	11.3002
((((((......))))))	chr6:75953335-75953601(-)$1	1	96	114	10.6018
((.(((......))).))	chr5:132202459-132202692(+)$1	1	105	123	11.8156
(.((((......)))).)	chr19:47731985-47732287(-)$1	1	203	221	10.1679
(.((((......)))).)	chr12:131357028-131357263(+)$1	1	41	59	10.1679
((.(((......)))..)	chr1:19923404-19923696(+)$1	1	249	267	11.0888
.(..((......))..).	chr6:26158312-26158602(+)$1	1	224	242	10.4319
((.(((......))))))	chr12:111180494-111180746(-)$1	1	99	117	11.6492
(((.((......))))).	chr19:39926463-39926688(-)$1	1	11	29	9.8443
((((((......)))(((	chr9:128003305-128003571(-)$1	1	126	144	9.5153
(..(((......)))..)	chr6:31704109-31704393(-)$1	1	89	107	11.5228
((((((......))))))	chr20:34638645-34638946(-)$1	1	51	69	10.6018
((..((......))..))	chr15:69113078-69113332(-)$1	1	88	106	10.0576
.(((((......))))))	chr9:86594964-86595225(-)$1	1	211	229	9.5183
.(((((......))).))	chr15:78832687-78832980(+)$1	1	70	88	11.0002
((((((......))))))	chr17:4843887-4844221(+)$1	1	249	267	10.6018
((.(((......))))).	chr11:63448939-63449226(+)$1	1	183	201	10.0925
.(((((......))))).	chr2:28974686-28975030(+)$1	1	267	285	11.3002
((.(((......)))..)	chr15:64385842-64386171(-)$1	1	119	137	11.0888
((((((......)).)))	chr1:205719020-205719280(-)$1	1	193	211	10.6926
(.((((......))))))	chr6:144416512-144416800(-)$1	1	259	277	10.0108
((((((......))))))	chr1:109642825-109643028(+)$1	1	165	183	11.3912
(((.((......)).)))	chr12:56510871-56511078(+)$1	1	162	180	10.7138
((((((......))))))	chr12:112846323-112846555(-)$1	1	34	52	11.3912
.(((((......)).)))	chr12:21807397-21807688(-)$1	1	74	92	10.7486
((((((......))))))	chr1:46769271-46769546(+)$1	1	54	72	10.6018
((((((......))))))	chr1:109642828-109643031(+)$1	1	162	180	11.3912
((((.(......).))))	chr10:7830042-7830320(+)$1	1	194	212	10.8470
((((((......))))))	chr20:57607210-57607495(-)$1	1	139	157	11.3912
((((((......))))))	chr11:65769871-65770138(+)$1	1	134	152	11.3912
((((((......))))))	chr3:23959240-23959465(+)$1	1	189	207	10.6018
(((..(......)..)))	chr8:126010673-126010976(+)$1	1	275	293	10.7376
(((.((......)).)))	chr22:20104910-20105262(+)$1	1	54	72	10.4994
((((((......))))))	chr8:74205733-74205936(-)$1	1	15	33	11.3912
.(((((......))))).	chr5:81574037-81574242(-)$1	1	11	29	11.2299
((((((......)))..)	chr14:76070447-76070673(+)$1	1	142	160	11.2171
((((((......)))).)	chr9:113018606-113018926(-)$1	1	130	148	10.2777
((.(((......))).))	chr2:97560688-97560992(-)$1	1	143	161	11.2048
...(((......))))))	chr3:197676963-197677193(+)$1	1	165	183	11.1073
.(((((......))))).	chr11:5290786-5291006(-)$1	1	35	53	10.3914
.(((((......))))))	chr6:10723323-10723574(+)$1	1	92	110	9.7188
.(((((......))))).	chr17:7215171-7215419(+)$1	1	20	38	11.3002
(.((((......)).)).	chr15:90777004-90777263(-)$1	1	163	181	9.6032
((((((......))))))	chr10:70514835-70515094(+)$1	1	120	138	10.6018
.(((((......))))))	chr5:68462855-68463201(+)$1	1	269	287	11.1578
((.(((......))).))	chr8:74204911-74205132(-)$1	1	117	135	11.3250
(.((((......)).)).	chr11:64084824-64085089(-)$1	1	86	104	9.6166

#PSSM
g : 0.13	b : 0.12	[ : 0.12	f : 0.12	d : 0.10	c : 0.10	e : 0.08	! : 0.05	: : 0.05	# : 0.03	% : 0.01	h : 0.01	H : 0.01	" : 0.01	
e : 0.27	g : 0.13	f : 0.12	[ : 0.10	d : 0.08	c : 0.08	b : 0.06	! : 0.03	% : 0.01	h : 0.01	a : 0.01	H : 0.01	" : 0.01	
e : 0.25	[ : 0.15	g : 0.13	f : 0.12	d : 0.10	! : 0.05	b : 0.05	c : 0.03	% : 0.01	a : 0.01	h : 0.01	H : 0.01	" : 0.01	
c : 0.31	e : 0.22	g : 0.12	f : 0.10	d : 0.08	! : 0.06	[ : 0.05	b : 0.03	
c : 0.29	e : 0.18	b : 0.15	g : 0.12	f : 0.10	d : 0.08	! : 0.03	[ : 0.01	
c : 0.29	e : 0.18	b : 0.15	g : 0.12	f : 0.10	d : 0.08	a : 0.05	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
c : 0.29	e : 0.18	b : 0.15	g : 0.12	f : 0.10	d : 0.08	a : 0.05	
c : 0.29	e : 0.18	b : 0.15	g : 0.12	f : 0.10	d : 0.08	2 : 0.03	] : 0.01	
c : 0.31	e : 0.20	g : 0.12	f : 0.10	] : 0.10	d : 0.08	2 : 0.06	
e : 0.25	] : 0.13	g : 0.13	f : 0.12	d : 0.10	2 : 0.10	c : 0.05	b : 0.05	3 : 0.01	h : 0.01	
e : 0.25	b : 0.13	g : 0.13	f : 0.12	c : 0.08	2 : 0.06	d : 0.05	] : 0.05	a : 0.03	h : 0.03	3 : 0.01	
b : 0.13	g : 0.13	f : 0.12	] : 0.10	c : 0.10	d : 0.08	e : 0.08	5 : 0.03	H : 0.03	h : 0.03	: : 0.03	3 : 0.01	a : 0.01	2 : 0.01	B : 0.01	4 : 0.01	

#score	623.0455245696919
#seq	58
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_CDS_m3_run2.txt

#BEAR
"ddddqqqqqqqqdddd3	chr19:13050766-13050972(+)$1	206	34	52	14.8499
FddddqqqqqqqqddddB	chr10:102120390-102120625(+)$1	235	209	227	13.1663
eeeeeqqqqqqqqeeeee	chr12:56120852-56121084(-)$1	232	154	172	15.1591
ee[bbqqqqqqqqbb]ee	chr4:77116769-77117089(-)$1	320	68	86	13.6869
ee[bbqqqqqqqqbb]ee	chrX:77373446-77373677(+)$1	231	151	169	13.6869
eeeeeqqqqqqqqeeeee	chr5:133295297-133295590(-)$1	293	242	260	15.1591
eeeeeqqqqqqqqeeeee	chr1:55512122-55512420(+)$1	298	114	132	15.1591
eeeeeqqqqqqqqeeeee	chr1:116931423-116931632(+)$1	209	99	117	15.1591
ee[bbqqqqqqqqbb]ee	chr11:88061185-88061465(-)$1	280	148	166	13.6869
ddcccqqqqqqqqccc]d	chr5:138282878-138283203(-)$1	325	45	63	13.7704
fffffqqqqqqqqfffff	chr3:10012216-10012446(-)$1	230	144	162	12.9487
=====qqqqqqqq=====	chr9:102768688-102769013(-)$1	325	11	29	13.8224
eeebbqqqqqqqqbb]ee	chr9:75777634-75777877(+)$1	243	124	142	13.8209
eeeeeqqqqqqqqeeeee	chr8:124033585-124033840(-)$1	255	228	246	15.1591
fffffqqqqqqqqfffff	chr2:223785900-223786164(+)$1	264	24	42	12.9487
eeeeeqqqqqqqqeeeee	chr12:110777207-110777422(+)$1	215	180	198	15.1591
"ddddqqqqqqqqdddd2	chr15:64454156-64454366(-)$1	210	10	28	14.6973
eeeeeqqqqqqqqeeeee	chr11:34112091-34112325(+)$1	234	191	209	15.1591
gggggqqqqqqqqggggg	chr5:131543323-131543654(-)$1	331	185	203	13.6841
[ddddqqqqqqqqdddd]	chr19:50037353-50037725(+)$1	372	95	113	14.9615
eeeeeqqqqqqqqeeeee	chr7:140404559-140404864(+)$1	305	23	41	15.1591
eeeeeqqqqqqqqeeeee	chr19:47287261-47287474(-)$1	213	101	119	15.1591
[ddddqqqqqqqqdddd]	chr11:75279959-75280228(+)$1	269	236	254	14.9615
dd[bbqqqqqqqqbbddd	chr15:44048784-44049027(+)$1	243	107	125	13.1753
[ddddqqqqqqqqdddd]	chr15:58903155-58903400(-)$1	245	113	131	14.9615
d[cccqqqqqqqqccc]d	chr1:116941190-116941459(+)$1	269	197	215	13.6201
gg[bbqqqqqqqqbb]gg	chr1:220142300-220142519(-)$1	219	156	174	13.0138
[ddddqqqqqqqqddddi	chr13:46716358-46716649(-)$1	291	123	141	14.8457
eeeeeqqqqqqqqeeeee	chr19:12989095-12989303(-)$1	208	80	98	15.1591
ffcccqqqqqqqqccc]f	chr22:36661236-36661513(+)$1	277	81	99	13.6101
eeeeeqqqqqqqqeeeee	chr19:11224210-11224480(+)$1	270	187	205	15.1591
eeeeeqqqqqqqqeeeee	chr4:80898674-80898957(-)$1	283	7	25	15.1591
a[cccqqqqqqqqccc]a	chr19:54377051-54377303(+)$1	252	56	74	13.6563
eddddqqqqqqqqdddd:	chr6:143457891-143458185(+)$1	294	267	285	13.8707
[ddddqqqqqqqqddddg	chr16:70291837-70292045(-)$1	208	179	197	14.8659
[ddddqqqqqqqqdddd2	chr5:179147420-179147661(+)$1	241	97	115	14.8069
!ddddqqqqqqqqdddde	chr7:54823406-54823675(-)$1	269	84	102	14.9885
ddcccqqqqqqqqccc]d	chr10:73579250-73579463(-)$1	213	28	46	13.7704
gggggqqqqqqqqggggg	chr1:100203541-100203771(-)$1	230	88	106	13.6841
!ddddqqqqqqqqdddd]	chr11:5274418-5274625(-)$1	207	153	171	14.9586
eeeeeqqqqqqqqeeeee	chr5:154201931-154202192(-)$1	261	27	45	15.1591
!ddddqqqqqqqqddddc	chr1:113459877-113460136(-)$1	259	42	60	14.7595
[ddddqqqqqqqqdddd]	chr19:48892783-48893011(-)$1	228	90	108	14.9615
eeebbqqqqqqqqbb]ee	chr5:179136947-179137166(+)$1	219	116	134	13.8209
c[cccqqqqqqqqccccc	chr1:165697155-165697440(-)$1	285	102	120	13.5621
ee!!aqqqqqqqqa22ee	chr15:44058966-44059199(+)$1	233	210	228	13.5844
"ddddqqqqqqqqdddd3	chr1:220208175-220208435(-)$1	260	190	208	14.8499
"ddddqqqqqqqqdddd2	chr14:68156860-68157116(-)$1	256	151	169	14.6973
eddddqqqqqqqqdddd]	chr17:42428718-42428928(+)$1	210	40	58	14.9457
eeeeeqqqqqqqqeeeee	chr6:122768216-122768484(-)$1	268	11	29	15.1591
fffffqqqqqqqqfffff	chr3:156271361-156271639(-)$1	278	179	197	12.9487
"ddddqqqqqqqqdddd3	chr2:10928749-10928975(-)$1	226	89	107	14.8499
!ddddqqqqqqqqdddd2	chr1:196648744-196649023(+)$1	279	72	90	14.8040
iiiiiqqqqqqqqiiiii	chr3:139093234-139093529(-)$1	295	57	75	13.5583
fffffqqqqqqqqfffff	chr19:12989269-12989493(-)$1	224	43	61	12.9487
eeeeeqqqqqqqqeeeee	chr1:55512095-55512322(+)$1	227	141	159	15.1591
eeeeeqqqqqqqqeeeee	chr1:55509422-55509651(+)$1	229	152	170	15.1591
!!cccqqqqqqqqccc22	chrX:47444879-47445161(+)$1	282	235	253	13.6433
eeeeeqqqqqqqqeeeee	chr9:116022476-116022861(+)$1	385	149	167	15.1591
d[cccqqqqqqqqccc]d	chr1:43394814-43395079(-)$1	265	143	161	13.6201
fffffqqqqqqqqfffff	chr19:11686977-11687327(-)$1	350	145	163	12.9487
eeeeeqqqqqqqqeeeee	chr12:54059031-54059294(-)$1	263	48	66	15.1591
gggggqqqqqqqqggggg	chr1:156107344-156107593(+)$1	249	162	180	13.6841
eeeeeqqqqqqqqeeeee	chr12:56120884-56121113(-)$1	229	183	201	15.1591
!ddddqqqqqqqqdddd2	chr3:133526499-133526768(+)$1	269	161	179	14.8040

#otherMatches

#Seq PSSM
AGAGGGGUGAGAGCCUCG	chr19:13050766-13050972(+)$1	206	34	52	14.8499
CGGUCUGGCCUAUGACCG	chr10:102120390-102120625(+)$1	235	209	227	13.1663
GUUGGGGGCGGGACCAAC	chr12:56120852-56121084(-)$1	232	154	172	15.1591
CUAGAAAAUUGUGUUAAG	chr4:77116769-77117089(-)$1	320	68	86	13.6869
AGAAGGAGCUGAACUACU	chrX:77373446-77373677(+)$1	231	151	169	13.6869
CCUUGGAAGAAAACAGGG	chr5:133295297-133295590(-)$1	293	242	260	15.1591
CUCUGUCUUUGCCCAGAG	chr1:55512122-55512420(+)$1	298	114	132	15.1591
GGUGGAUAACUCCUCGCU	chr1:116931423-116931632(+)$1	209	99	117	15.1591
GGGGAUAUAUGAUUUGCC	chr11:88061185-88061465(-)$1	280	148	166	13.6869
UCGCCGAGGAGGAGGCUG	chr5:138282878-138283203(-)$1	325	45	63	13.7704
CGGAGCAUUUACUCUCUG	chr3:10012216-10012446(-)$1	230	144	162	12.9487
GUGAGCUUGCAAUCUUAC	chr9:102768688-102769013(-)$1	325	11	29	13.8224
UUUGCUUUCUCUUGCUAA	chr9:75777634-75777877(+)$1	243	124	142	13.8209
CUUUAUACAACUUUAAAG	chr8:124033585-124033840(-)$1	255	228	246	15.1591
AUAAUGAAAAGAAAUUGU	chr2:223785900-223786164(+)$1	264	24	42	12.9487
ACAGAAGAUCAUGUCUGU	chr12:110777207-110777422(+)$1	215	180	198	15.1591
CAGGUGUAUUUUGACCUA	chr15:64454156-64454366(-)$1	210	10	28	14.6973
UCUUUUCUUUUUUAAAGG	chr11:34112091-34112325(+)$1	234	191	209	15.1591
AUCGUCAGGUACUACGAU	chr5:131543323-131543654(-)$1	331	185	203	13.6841
GGCGGAUCGUGGACCGCA	chr19:50037353-50037725(+)$1	372	95	113	14.9615
AGAUUUAUUUAACAAUUU	chr7:140404559-140404864(+)$1	305	23	41	15.1591
UCACCGGAACCAGGGUGA	chr19:47287261-47287474(-)$1	213	101	119	15.1591
GAGGUGACCCAUGACCUG	chr11:75279959-75280228(+)$1	269	236	254	14.9615
AGUGGAUAUCCAACCCUG	chr15:44048784-44049027(+)$1	243	107	125	13.1753
GUGAGAAAUAUGGCUUAG	chr15:58903155-58903400(-)$1	245	113	131	14.9615
CAAUUGUGACUGGAGUAG	chr1:116941190-116941459(+)$1	269	197	215	13.6201
GCAAUGGAAAGGAAUAGC	chr1:220142300-220142519(-)$1	219	156	174	13.0138
AGAAUCAAGCGAAGUUCU	chr13:46716358-46716649(-)$1	291	123	141	14.8457
UUUGCCAAGUUCAGCAAA	chr19:12989095-12989303(-)$1	208	80	98	15.1591
CGGUUGAAAAGUGAGCUU	chr22:36661236-36661513(+)$1	277	81	99	13.6101
GGCUCCAAGCCAAGGGCC	chr19:11224210-11224480(+)$1	270	187	205	15.1591
GAAGAUUUUACUUUCUUC	chr4:80898674-80898957(-)$1	283	7	25	15.1591
GCGGCCCUCUUCUGCCUC	chr19:54377051-54377303(+)$1	252	56	74	13.6563
AAAGAAACUUGGCUCUUA	chr6:143457891-143458185(+)$1	294	267	285	13.8707
UGGACCAACUCUUGUCUG	chr16:70291837-70292045(-)$1	208	179	197	14.8659
AAGGCAAAUGGAAGCCUC	chr5:179147420-179147661(+)$1	241	97	115	14.8069
CCUGUUUUUAAAUGCAGA	chr7:54823406-54823675(-)$1	269	84	102	14.9885
CCCUCUUGGGUCUGGGAG	chr10:73579250-73579463(-)$1	213	28	46	13.7704
AAAGGCUAUUUAUCCUUU	chr1:100203541-100203771(-)$1	230	88	106	13.6841
GGCUUUAUUCUGCAAGCA	chr11:5274418-5274625(-)$1	207	153	171	14.9586
GGUUAUUAACUAUUAACU	chr5:154201931-154202192(-)$1	261	27	45	15.1591
GCCCGACCAUCUAUGGGA	chr1:113459877-113460136(-)$1	259	42	60	14.7595
CAAGUUCAAAGCUACUUA	chr19:48892783-48893011(-)$1	228	90	108	14.9615
UAAGUAAGAAAAAGCAUU	chr5:179136947-179137166(+)$1	219	116	134	13.8209
CCUUGCCCCUUCACGAGC	chr1:165697155-165697440(-)$1	285	102	120	13.5621
UAAAGAACAAUAACCCUG	chr15:44058966-44059199(+)$1	233	210	228	13.5844
AACAUUUUGUUGUGUGUG	chr1:220208175-220208435(-)$1	260	190	208	14.8499
AUCCUCUUCACCCAGGAA	chr14:68156860-68157116(-)$1	256	151	169	14.6973
GAGCUGCCCAGAUGGCUA	chr17:42428718-42428928(+)$1	210	40	58	14.9457
UGUUUGCUCUGAAAAACA	chr6:122768216-122768484(-)$1	268	11	29	15.1591
UUUGUUCUCAAGCACAAG	chr3:156271361-156271639(-)$1	278	179	197	12.9487
GCAGAAAUUCUUAUCUGG	chr2:10928749-10928975(-)$1	226	89	107	14.8499
GGAGAAUGAACGAUUUCA	chr1:196648744-196649023(+)$1	279	72	90	14.8040
GUUUUUCAUUAAUAAAAC	chr3:139093234-139093529(-)$1	295	57	75	13.5583
GGUUUACUGACCAGAACC	chr19:12989269-12989493(-)$1	224	43	61	12.9487
CUCUGUCUUUGCCCAGAG	chr1:55512095-55512322(+)$1	227	141	159	15.1591
GCAGUCAGAGCGCACUGC	chr1:55509422-55509651(+)$1	229	152	170	15.1591
UUCCCUAAAUCGUGGGCU	chrX:47444879-47445161(+)$1	282	235	253	13.6433
UCAUGCUCAUCUUCAUGA	chr9:116022476-116022861(+)$1	385	149	167	15.1591
CUGUGUAUGCCACCAUUG	chr1:43394814-43395079(-)$1	265	143	161	13.6201
GCCACUACCCCGUGUGGU	chr19:11686977-11687327(-)$1	350	145	163	12.9487
AGAAAUUCAGUCUUUUCU	chr12:54059031-54059294(-)$1	263	48	66	15.1591
UGGAGAUGACCUGCUCCA	chr1:156107344-156107593(+)$1	249	162	180	13.6841
GUUGGGGGCGGGACCAAC	chr12:56120884-56121113(-)$1	229	183	201	15.1591
UAACAGGGUAAGAUGUUU	chr3:133526499-133526768(+)$1	269	161	179	14.8040

#DB
.((((........)))).	chr19:13050766-13050972(+)$1	1	34	52	14.8499
)((((........)))))	chr10:102120390-102120625(+)$1	1	209	227	13.1663
(((((........)))))	chr12:56120852-56121084(-)$1	1	154	172	15.1591
((.((........)).))	chr4:77116769-77117089(-)$1	1	68	86	13.6869
((.((........)).))	chrX:77373446-77373677(+)$1	1	151	169	13.6869
(((((........)))))	chr5:133295297-133295590(-)$1	1	242	260	15.1591
(((((........)))))	chr1:55512122-55512420(+)$1	1	114	132	15.1591
(((((........)))))	chr1:116931423-116931632(+)$1	1	99	117	15.1591
((.((........)).))	chr11:88061185-88061465(-)$1	1	148	166	13.6869
(((((........))).)	chr5:138282878-138283203(-)$1	1	45	63	13.7704
(((((........)))))	chr3:10012216-10012446(-)$1	1	144	162	12.9487
(((((........)))))	chr9:102768688-102769013(-)$1	1	11	29	13.8224
(((((........)).))	chr9:75777634-75777877(+)$1	1	124	142	13.8209
(((((........)))))	chr8:124033585-124033840(-)$1	1	228	246	15.1591
(((((........)))))	chr2:223785900-223786164(+)$1	1	24	42	12.9487
(((((........)))))	chr12:110777207-110777422(+)$1	1	180	198	15.1591
.((((........)))).	chr15:64454156-64454366(-)$1	1	10	28	14.6973
(((((........)))))	chr11:34112091-34112325(+)$1	1	191	209	15.1591
(((((........)))))	chr5:131543323-131543654(-)$1	1	185	203	13.6841
.((((........)))).	chr19:50037353-50037725(+)$1	1	95	113	14.9615
(((((........)))))	chr7:140404559-140404864(+)$1	1	23	41	15.1591
(((((........)))))	chr19:47287261-47287474(-)$1	1	101	119	15.1591
.((((........)))).	chr11:75279959-75280228(+)$1	1	236	254	14.9615
((.((........)))))	chr15:44048784-44049027(+)$1	1	107	125	13.1753
.((((........)))).	chr15:58903155-58903400(-)$1	1	113	131	14.9615
(.(((........))).)	chr1:116941190-116941459(+)$1	1	197	215	13.6201
((.((........)).))	chr1:220142300-220142519(-)$1	1	156	174	13.0138
.((((........)))))	chr13:46716358-46716649(-)$1	1	123	141	14.8457
(((((........)))))	chr19:12989095-12989303(-)$1	1	80	98	15.1591
(((((........))).)	chr22:36661236-36661513(+)$1	1	81	99	13.6101
(((((........)))))	chr19:11224210-11224480(+)$1	1	187	205	15.1591
(((((........)))))	chr4:80898674-80898957(-)$1	1	7	25	15.1591
(.(((........))).)	chr19:54377051-54377303(+)$1	1	56	74	13.6563
)((((........)))).	chr6:143457891-143458185(+)$1	1	267	285	13.8707
.((((........)))))	chr16:70291837-70292045(-)$1	1	179	197	14.8659
.((((........)))).	chr5:179147420-179147661(+)$1	1	97	115	14.8069
.((((........)))))	chr7:54823406-54823675(-)$1	1	84	102	14.9885
(((((........))).)	chr10:73579250-73579463(-)$1	1	28	46	13.7704
(((((........)))))	chr1:100203541-100203771(-)$1	1	88	106	13.6841
.((((........)))).	chr11:5274418-5274625(-)$1	1	153	171	14.9586
(((((........)))))	chr5:154201931-154202192(-)$1	1	27	45	15.1591
.((((........)))))	chr1:113459877-113460136(-)$1	1	42	60	14.7595
.((((........)))).	chr19:48892783-48893011(-)$1	1	90	108	14.9615
(((((........)).))	chr5:179136947-179137166(+)$1	1	116	134	13.8209
(.(((........)))))	chr1:165697155-165697440(-)$1	1	102	120	13.5621
((..(........)..))	chr15:44058966-44059199(+)$1	1	210	228	13.5844
.((((........)))).	chr1:220208175-220208435(-)$1	1	190	208	14.8499
.((((........)))).	chr14:68156860-68157116(-)$1	1	151	169	14.6973
(((((........)))).	chr17:42428718-42428928(+)$1	1	40	58	14.9457
(((((........)))))	chr6:122768216-122768484(-)$1	1	11	29	15.1591
(((((........)))))	chr3:156271361-156271639(-)$1	1	179	197	12.9487
.((((........)))).	chr2:10928749-10928975(-)$1	1	89	107	14.8499
.((((........)))).	chr1:196648744-196649023(+)$1	1	72	90	14.8040
(((((........)))))	chr3:139093234-139093529(-)$1	1	57	75	13.5583
(((((........)))))	chr19:12989269-12989493(-)$1	1	43	61	12.9487
(((((........)))))	chr1:55512095-55512322(+)$1	1	141	159	15.1591
(((((........)))))	chr1:55509422-55509651(+)$1	1	152	170	15.1591
..(((........)))..	chrX:47444879-47445161(+)$1	1	235	253	13.6433
(((((........)))))	chr9:116022476-116022861(+)$1	1	149	167	15.1591
(.(((........))).)	chr1:43394814-43395079(-)$1	1	143	161	13.6201
(((((........)))))	chr19:11686977-11687327(-)$1	1	145	163	12.9487
(((((........)))))	chr12:54059031-54059294(-)$1	1	48	66	15.1591
(((((........)))))	chr1:156107344-156107593(+)$1	1	162	180	13.6841
(((((........)))))	chr12:56120884-56121113(-)$1	1	183	201	15.1591
.((((........)))).	chr3:133526499-133526768(+)$1	1	161	179	14.8040

#PSSM
e : 0.41	[ : 0.10	f : 0.09	! : 0.09	" : 0.07	d : 0.07	g : 0.06	F : 0.01	= : 0.01	a : 0.01	c : 0.01	i : 0.01	
e : 0.38	d : 0.35	f : 0.09	g : 0.06	[ : 0.06	= : 0.01	i : 0.01	! : 0.01	
e : 0.32	d : 0.30	c : 0.12	[ : 0.07	f : 0.07	g : 0.04	= : 0.01	! : 0.01	i : 0.01	
d : 0.30	e : 0.29	c : 0.12	b : 0.10	f : 0.07	g : 0.04	= : 0.01	! : 0.01	i : 0.01	
d : 0.30	e : 0.29	c : 0.12	b : 0.10	f : 0.07	g : 0.04	= : 0.01	a : 0.01	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.30	e : 0.29	c : 0.12	b : 0.10	f : 0.07	g : 0.04	= : 0.01	a : 0.01	i : 0.01	
d : 0.30	e : 0.29	c : 0.12	b : 0.10	f : 0.07	g : 0.04	= : 0.01	2 : 0.01	i : 0.01	
d : 0.32	e : 0.29	c : 0.12	] : 0.09	f : 0.07	g : 0.04	= : 0.01	2 : 0.01	i : 0.01	
e : 0.38	d : 0.32	] : 0.09	f : 0.07	g : 0.06	= : 0.01	c : 0.01	i : 0.01	2 : 0.01	
e : 0.40	f : 0.09	2 : 0.09	] : 0.09	d : 0.07	g : 0.07	3 : 0.04	i : 0.03	c : 0.03	B : 0.01	= : 0.01	a : 0.01	: : 0.01	

#score	933.5386581074312
#seq	65
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_CDS_m2_run1.txt

#BEAR
""dddd[ccc!!bboooooobb22cccdddd22ee	chr22:42981220-42981474(-)$1	254	25	60	13.9980
bb!!bb[dddd[bboooooobb]ddddbb]bb22f	chr19:10222229-10222498(+)$1	269	68	103	12.6754
fff"""ccc[a[cccmmmmccc]accc333fffff	chr7:635760-636041(-)$1	281	38	73	12.0435
dd[ggggggg!!bboooooobb]ggggggg]dddd	chr20:376746-376973(+)$1	227	44	79	15.5182
eeeee!!ccc!!bboooooobb22ccc333eeeee	chr5:139947219-139947492(+)$1	273	137	172	15.1193
g####ccc[a!!bbmmmmbb333a]ccc22ggggg	chr16:30681408-30681686(+)$1	278	188	223	11.4201
[a[hhhhhhhh!!aooooooa22hhhhhhhh]a]b	chr19:51301440-51301675(-)$1	235	154	189	13.3989
c[abb!!gggggggooooooggggggg333bb]a]	chr19:47778057-47778359(+)$1	302	148	183	14.8757
ee"""ccc!!ddddoooooodddd]ccc22eeeee	chr22:35743095-35743348(+)$1	253	153	188	13.6137
[a[hhhhhhhh!!aooooooa22hhhhhhhh]a]b	chr19:51301386-51301640(-)$1	254	119	154	13.3989
cc"""bb[ffffffooooooffffff]bb4444cc	chr22:39918028-39918253(+)$1	225	186	221	12.3633
===========cccnnnnnccc]===========:	chr17:60767944-60768205(+)$1	261	79	114	14.5490
e!!ffffff[a[aooooooa]a]ffffff333eee	chr22:39917833-39918085(+)$1	252	77	112	13.3452
e==========!!ccclllccc]==========GG	chr16:28884845-28885128(+)$1	283	151	186	13.9838
=====dddd!!cccooooooccc22dddd666666	chr9:123620071-123620345(-)$1	274	50	85	12.2903
[==========[bboooooobb]==========22	chr3:43408208-43408551(-)$1	343	20	55	18.1437
c[ccc[ccc!!ddddllldddd22ccc]ccc]ccc	chr10:45953756-45954049(-)$1	293	65	100	11.3517
eeeccc!!ccc[bboooooobb]ccc22cccdddd	chr10:1065586-1065836(+)$1	250	29	64	13.9885
&ffffff####cccooooooccc333ffffff444	chr17:60765775-60766035(+)$1	260	122	157	13.5736
$$$ggggggg!!bboooooobbggggggg22====	chr21:45565319-45565609(+)$1	290	77	112	15.6640
ffff[==========nnnnn==========fffff	chr15:35271727-35271958(-)$1	231	98	133	12.8093
ggggggg[dddd[aooooooadddd22ggggggg]	chr19:3543286-3543544(-)$1	258	168	203	13.7287
=========[a[cccmmmmccc]a]==========	chr12:121001213-121001490(+)$1	277	236	271	14.7045
d[bb!!dddd[cccooooooccc]dddd]bb]ddd	chr1:246027060-246027289(-)$1	229	75	110	13.2747
iii[ccc[a[a[bboooooobba]accciiiiiii	chr1:228680713-228680932(+)$1	219	66	101	16.1946
HH============oooooo============:::	chr17:79801306-79801562(-)$1	256	15	50	13.6609
ggg!!ccc[bbcccooooooccc]bb22ccc22gg	chr11:767157-767392(-)$1	235	14	49	14.0758
===========rrrrrrrrr===========:eee	chr19:49377471-49377707(+)$1	236	122	157	12.0868
[iiiiiiiii[cccnnnnnccc]iiiiiiiiia]b	chr16:77233307-77233575(+)$1	268	124	159	14.6585
[eeeee[ccc[cccooooooccc]ccc22eeeee]	chr14:76966071-76966324(+)$1	253	104	139	14.3419
bb"""ffffffcccooooooccc22ffffff4444	chr11:118472309-118472562(+)$1	253	207	242	13.6211
ee===========rrrrrrrrr===========22	chr17:7491307-7491583(+)$1	276	69	104	13.1469
iiiiii####ddddoooooodddd22iiiiiiiii	chr5:179264042-179264313(+)$1	271	76	111	14.6401
g[cccdddd"""ccclllccc333dddd]ccc]gg	chr5:644348-644627(+)$1	279	212	247	11.7387
!!hhhhhhhh!!bboooooobb22hhhhhhhh333	chr12:57910790-57911052(-)$1	262	125	160	14.1202
bbb[==========bbmmmmbb]==========]b	chr4:77987329-77987608(-)$1	279	120	155	12.3179
b==========!!ccclllccc]==========]b	chr16:28884928-28885214(+)$1	286	68	103	14.9314
a[dddd####ddddoooooodddd22dddd22a]d	chr1:45480381-45480608(+)$1	227	128	163	11.6326
ff[a"""gggggggooooooggggggg]a]fffff	chr14:105675727-105676007(-)$1	280	165	200	14.6184
cc[eeeee!!ccc[aooooooa]ccc]eeeee]cc	chr4:2263544-2263831(-)$1	287	118	153	13.1931
bb[bb[dddd[cccooooooccc]dddd]bb]bb]	chr20:61919700-61919988(+)$1	288	66	101	12.9746
!ggggggg[ddddbbnnnnnbb]dddd333ggggg	chr5:159492233-159492502(+)$1	269	95	130	11.6477
ccc!!dddd"""cccmmmmccc22dddd]ccc333	chr17:73233574-73233872(-)$1	298	34	69	11.5932
c!!bb!!gggggggooooooggggggg]bb]ccc:	chr19:4400254-4400530(-)$1	276	169	204	13.7482
!iiiiiiiii!!cccnnnnnccciiiiiiiii22b	chr17:35443887-35444136(-)$1	249	16	51	14.3922
!!iiiiiiiii!!annnnna22iiiiiiiii]ccc	chr19:1491220-1491480(+)$1	260	166	201	13.8786
========="""bboooooobb]==========::	chr5:139946776-139947027(+)$1	251	65	100	16.7958
ee[bb!!ffffff[aooooooa]ffffff]bb]ee	chr7:1040013-1040275(-)$1	262	204	239	11.9121
cc!!ccc[bbddddoooooodddd]bb]ccc]ccc	chr1:43850052-43850337(-)$1	285	148	183	13.0738
$$ggggggg[a[ddddlllddddaggggggg]eee	chr16:417308-417549(-)$1	241	104	139	11.3152
ee"""bb####cccooooooccc22bb22eeeee:	chr22:41752289-41752529(+)$1	240	3	38	13.1860
ggggggg[ccc[bbmmmmbbcccggggggg]a]dd	chr17:79826131-79826425(-)$1	294	41	76	11.1151

#otherMatches

#Seq PSSM
GCAGCGUGGGGGCUGUCUGAAGGACCCUGCUUUUU	chr22:42981220-42981474(-)$1	254	25	60	13.9980
cuggggauggggcuggggcagggcccacuaagcca	chr19:10222229-10222498(+)$1	269	68	103	12.6754
GGGAUGCAGAGGAGGUCACCCUGCCUGGCCCCCGU	chr7:635760-636041(-)$1	281	38	73	12.0435
CAUGGGGGUUCUGGGUAGGACCUGACCCUUCUGUU	chr20:376746-376973(+)$1	227	44	79	15.5182
GUCGUCAGUGUACACAGAGCUGCUCAUGAAGCGAC	chr5:139947219-139947492(+)$1	273	137	172	15.1193
GGGAAGGUGGGGCCAGCAGGAGAUGACCAACAGGG	chr16:30681408-30681686(+)$1	278	188	223	11.4201
GGCUAGGGGAGGAGCCACCCCCGCUUCCCUAUUGU	chr19:51301440-51301675(-)$1	235	154	189	13.3989
CGCCGAGAGCCCCGGAGGCGCGGGGCUGAGCGAGG	chr19:47778057-47778359(+)$1	302	148	183	14.8757
CCCUUAGGCUGGGACCUCCCUCCCUCCUCUGGUGU	chr22:35743095-35743348(+)$1	253	153	188	13.6137
GGCUAGGGGAGGAGCCACCCCCGCUUCCCUAUUGU	chr19:51301386-51301640(-)$1	254	119	154	13.3989
UGUAUGAGCCCAGAGUCCUAUCUGGGGUCUCCUCA	chr22:39918028-39918253(+)$1	225	186	221	12.3633
UCCUGGAUGAGAUGGAGAAUGUGUUUGUCUGGGAG	chr17:60767944-60768205(+)$1	261	79	114	14.5490
UGAUCUCUUUGCCCCCCUAGUCCAGGAGACUAAUA	chr22:39917833-39918085(+)$1	252	77	112	13.3452
CCCAGGCUCAGAGGCCCAGGGCGCUGGGUCUGGUG	chr16:28884845-28885128(+)$1	283	151	186	13.9838
UGUUGGCUCGGAGGGUCACACCUGAGGGCAAGGUU	chr9:123620071-123620345(-)$1	274	50	85	12.2903
AGCAGAGGCCUCGGCCACUACUUAGGCUUCUGUGG	chr3:43408208-43408551(-)$1	343	20	55	18.1437
AGAAUGGCCCUUUUGGACUAAAUUGGUGGUUGUGG	chr10:45953756-45954049(-)$1	293	65	100	11.3517
GGACAGGUAGAGGAUGCUUUUCGUUUCACUGGGAU	chr10:1065586-1065836(+)$1	250	29	64	13.9885
ACCUUUGGAUUGGCCUCCAUGCCUCGCAGAGGGAC	chr17:60765775-60766035(+)$1	260	122	157	13.5736
GAGUGAGGAAUGGCAGUGAGGUUUCUUCAAUUAGU	chr21:45565319-45565609(+)$1	290	77	112	15.6640
GGGAUAGUAGGUGGGGGUGAUCUGCUUGCUUCUUU	chr15:35271727-35271958(-)$1	231	98	133	12.8093
CAGGCUUCCCAGGCGUCCGAGUUGGUCAGGCCUGU	chr19:3543286-3543544(-)$1	258	168	203	13.7287
UGGGUUGCCGCAGAGGUGUUUCAGAGGUGACCCGG	chr12:121001213-121001490(+)$1	277	236	271	14.7045
uugucuuCCUUUUCUGGCCUGAGCAGGAUGCUGAU	chr1:246027060-246027289(-)$1	229	75	110	13.2747
GGCACUGACCGACUACAAGAAGCUGCGGGCCUUCU	chr1:228680713-228680932(+)$1	219	66	101	16.1946
UUUUUGAAAAUUCCGUCUGUGGGAUUUUUAGACAU	chr17:79801306-79801562(-)$1	256	15	50	13.6609
GCCAGGGCAGGGCUUGGGGCAGCACCAGGCUGGGG	chr11:767157-767392(-)$1	235	14	49	14.0758
GGAAGAGGGAGAAGCUGAGGCUUCCUCUUCCACUC	chr19:49377471-49377707(+)$1	236	122	157	12.0868
ACUCCUUUCUCUCCAACCAGGGCAGAAAGGAGGGA	chr16:77233307-77233575(+)$1	268	124	159	14.6585
GCAGCCCUGAACACCCAUUUGUGCUCACAGGUUGG	chr14:76966071-76966324(+)$1	253	104	139	14.3419
CUUCAAGAUGUCUAAAAGAAUGGUUAUGUCUGUCC	chr11:118472309-118472562(+)$1	253	207	242	13.6211
CCCCAGGGUGGGGUGAGGAGGUUCCUGCUCUGGCA	chr17:7491307-7491583(+)$1	276	69	104	13.1469
AGCUGCCUCCUGGUCUCUUCACCACUGUAGUUCUC	chr5:179264042-179264313(+)$1	271	76	111	14.6401
GUCACUUUGUAAACUUUAGGUGUUCAAAUGUGCCU	chr5:644348-644627(+)$1	279	212	247	11.7387
UCUCUGGCUUGGCUGACUGAGGAGGAGCCAGAACC	chr12:57910790-57911052(-)$1	262	125	160	14.1202
CAGAGAUUGUCUUUCCUGUUGGAAAAGGCAAUCAC	chr4:77987329-77987608(-)$1	279	120	155	12.3179
CCCAGGCUCAGAGGCCCAGGGCGCUGGGUCUGGUG	chr16:28884928-28885214(+)$1	286	68	103	14.9314
UAAGCCAUGGAAGGGUGAGGCCUUGAGGUUGAGGU	chr1:45480381-45480608(+)$1	227	128	163	11.6326
GUGGCCUUGAGGCAGAGCCGUGCCUCACUGACCCC	chr14:105675727-105676007(-)$1	280	165	200	14.6184
gggAGGAUGGAGCUGAACUCCCUGCUGAUCCUGCU	chr4:2263544-2263831(-)$1	287	118	153	13.1931
CCUGCCUGGGCCUGUGCUGUCAGACCCGCGUCGGU	chr20:61919700-61919988(+)$1	288	66	101	12.9746
CCAGGAAGAAGCCCAUUUGUUGAGGCUGACCUUCC	chr5:159492233-159492502(+)$1	269	95	130	11.6477
AGGAACUGGCAUACUGCAAAGUCCCCAGCCCUGCC	chr17:73233574-73233872(-)$1	298	34	69	11.5932
CGGUGGCGGGGCUGAAGAAGCAGUUCUACAAGGCG	chr19:4400254-4400530(-)$1	276	169	204	13.7482
UCGUUUCAGGUUAUGCAUGACAUCCUGGGAUGUAA	chr17:35443887-35444136(-)$1	249	16	51	14.3922
AGCCGUCGGCGCUAGCCCGUUUCGCCGACGGGCAC	chr19:1491220-1491480(+)$1	260	166	201	13.8786
UACGGUGCCCAUGCCCCAUUGCUGGCACUGUGCCA	chr5:139946776-139947027(+)$1	251	65	100	16.7958
GGCUGAGGUCUGUGCACGGCGGGGCAGGCACGUCC	chr7:1040013-1040275(-)$1	262	204	239	11.9121
CUAAGGCGCAAGGUGAAGAAGCUUCUGGGCCAGGA	chr1:43850052-43850337(-)$1	285	148	183	13.0738
AGUGUUCCUUGUGCCCGUGGGGCCGGGAGCGAGUA	chr16:417308-417549(-)$1	241	104	139	11.3152
CAGAAUGGAUGGAGAAGCCCCUCAGCAGGUGCCCU	chr22:41752289-41752529(+)$1	240	3	38	13.1860
CCCUGGACGUGUGCGUCUGCUGCUCCGGGGUGGAG	chr17:79826131-79826425(-)$1	294	41	76	11.1151

#DB
..((((.(((..((......))..)))))))..))	chr22:42981220-42981474(-)$1	1	25	60	13.9980
((..((.((((.((......)).)))))).))..)	chr19:10222229-10222498(+)$1	1	68	103	12.6754
(((...(((.(.(((....))).))))...)))))	chr7:635760-636041(-)$1	1	38	73	12.0435
((.(((((((..((......)).))))))).))))	chr20:376746-376973(+)$1	1	44	79	15.5182
(((((..(((..((......))..)))...)))))	chr5:139947219-139947492(+)$1	1	137	172	15.1193
(....(((.(..((....))...).)))..)))))	chr16:30681408-30681686(+)$1	1	188	223	11.4201
.(.((((((((..(......)..)))))))).).)	chr19:51301440-51301675(-)$1	1	154	189	13.3989
(.(((..(((((((......)))))))...)).).	chr19:47778057-47778359(+)$1	1	148	183	14.8757
((...(((..((((......)))).)))..)))))	chr22:35743095-35743348(+)$1	1	153	188	13.6137
.(.((((((((..(......)..)))))))).).)	chr19:51301386-51301640(-)$1	1	119	154	13.3989
((...((.((((((......)))))).))....))	chr22:39918028-39918253(+)$1	1	186	221	12.3633
((((((((((((((.....))).))))))))))).	chr17:60767944-60768205(+)$1	1	79	114	14.5490
(..((((((.(.(......).).))))))...)))	chr22:39917833-39918085(+)$1	1	77	112	13.3452
)((((((((((..(((...))).))))))))))))	chr16:28884845-28885128(+)$1	1	151	186	13.9838
(((((((((..(((......)))..))))......	chr9:123620071-123620345(-)$1	1	50	85	12.2903
.((((((((((.((......)).))))))))))..	chr3:43408208-43408551(-)$1	1	20	55	18.1437
(.(((.(((..((((...))))..))).))).)))	chr10:45953756-45954049(-)$1	1	65	100	11.3517
)))(((..(((.((......)).)))..)))((((	chr10:1065586-1065836(+)$1	1	29	64	13.9885
.((((((....(((......)))...))))))...	chr17:60765775-60766035(+)$1	1	122	157	13.5736
...(((((((..((......)))))))))..))))	chr21:45565319-45565609(+)$1	1	77	112	15.6640
((((.((((((((((.....)))))))))))))))	chr15:35271727-35271958(-)$1	1	98	133	12.8093
(((((((.((((.(......)))))..))))))).	chr19:3543286-3543544(-)$1	1	168	203	13.7287
(((((((((.(.(((....))).).))))))))))	chr12:121001213-121001490(+)$1	1	236	271	14.7045
(.((..((((.(((......))).)))).)).)))	chr1:246027060-246027289(-)$1	1	75	110	13.2747
(((.(((.(.(.((......))).)))))))))))	chr1:228680713-228680932(+)$1	1	66	101	16.1946
((((((((((((((......))))))))))))...	chr17:79801306-79801562(-)$1	1	15	50	13.6609
(((..(((.(((((......))).))..)))..))	chr11:767157-767392(-)$1	1	14	49	14.0758
(((((((((((.........))))))))))).(((	chr19:49377471-49377707(+)$1	1	122	157	12.0868
.(((((((((.(((.....))).)))))))))).)	chr16:77233307-77233575(+)$1	1	124	159	14.6585
.(((((.(((.(((......))).)))..))))).	chr14:76966071-76966324(+)$1	1	104	139	14.3419
((...(((((((((......)))..))))))....	chr11:118472309-118472562(+)$1	1	207	242	13.6211
(((((((((((((.........)))))))))))..	chr17:7491307-7491583(+)$1	1	69	104	13.1469
((((((....((((......))))..)))))))))	chr5:179264042-179264313(+)$1	1	76	111	14.6401
(.(((((((...(((...)))...)))).))).))	chr5:644348-644627(+)$1	1	212	247	11.7387
..((((((((..((......))..))))))))...	chr12:57910790-57911052(-)$1	1	125	160	14.1202
(((.((((((((((((....)).)))))))))).)	chr4:77987329-77987608(-)$1	1	120	155	12.3179
(((((((((((..(((...))).)))))))))).)	chr16:28884928-28885214(+)$1	1	68	103	14.9314
(.((((....((((......))))..))))..).)	chr1:45480381-45480608(+)$1	1	128	163	11.6326
((.(...(((((((......))))))).).)))))	chr14:105675727-105676007(-)$1	1	165	200	14.6184
((.(((((..(((.(......).))).))))).))	chr4:2263544-2263831(-)$1	1	118	153	13.1931
((.((.((((.(((......))).)))).)).)).	chr20:61919700-61919988(+)$1	1	66	101	12.9746
.(((((((.((((((.....)).))))...)))))	chr5:159492233-159492502(+)$1	1	95	130	11.6477
(((..((((...(((....)))..)))).)))...	chr17:73233574-73233872(-)$1	1	34	69	11.5932
(..((..(((((((......))))))).)).))).	chr19:4400254-4400530(-)$1	1	169	204	13.7482
.(((((((((..(((.....))))))))))))..)	chr17:35443887-35444136(-)$1	1	16	51	14.3922
..(((((((((..(.....)..))))))))).)))	chr19:1491220-1491480(+)$1	1	166	201	13.8786
(((((((((...((......)).))))))))))..	chr5:139946776-139947027(+)$1	1	65	100	16.7958
((.((..((((((.(......).)))))).)).))	chr7:1040013-1040275(-)$1	1	204	239	11.9121
((..(((.((((((......)))).)).))).)))	chr1:43850052-43850337(-)$1	1	148	183	13.0738
..(((((((.(.((((...)))))))))))).)))	chr16:417308-417549(-)$1	1	104	139	11.3152
((...((....(((......)))..))..))))).	chr22:41752289-41752529(+)$1	1	3	38	13.1860
(((((((.(((.((....)))))))))))).).))	chr17:79826131-79826425(-)$1	1	41	76	11.1151

#PSSM
e : 0.15	c : 0.13	b : 0.09	g : 0.09	[ : 0.09	= : 0.09	! : 0.07	f : 0.05	d : 0.03	$ : 0.03	i : 0.03	" : 0.01	& : 0.01	H : 0.01	a : 0.01	
= : 0.15	e : 0.13	[ : 0.09	b : 0.07	f : 0.07	c : 0.07	! : 0.07	g : 0.07	i : 0.07	a : 0.03	$ : 0.03	" : 0.01	d : 0.01	# : 0.01	H : 0.01	
= : 0.19	[ : 0.13	g : 0.09	i : 0.09	! : 0.07	" : 0.07	f : 0.05	e : 0.05	c : 0.05	d : 0.03	b : 0.03	# : 0.01	a : 0.01	$ : 0.01	h : 0.01	
= : 0.19	g : 0.11	" : 0.09	b : 0.09	! : 0.07	i : 0.07	e : 0.05	h : 0.05	f : 0.05	c : 0.05	d : 0.03	[ : 0.03	# : 0.01	a : 0.01	
= : 0.21	" : 0.11	g : 0.11	b : 0.09	c : 0.09	i : 0.07	e : 0.05	h : 0.05	! : 0.05	d : 0.03	f : 0.03	# : 0.01	[ : 0.01	
= : 0.21	g : 0.11	c : 0.11	d : 0.09	! : 0.09	i : 0.07	b : 0.05	h : 0.05	f : 0.05	" : 0.03	[ : 0.03	e : 0.03	
= : 0.21	c : 0.13	g : 0.11	! : 0.09	d : 0.09	[ : 0.05	h : 0.05	f : 0.05	i : 0.05	b : 0.03	# : 0.03	" : 0.01	e : 0.01	
= : 0.21	c : 0.15	g : 0.13	d : 0.11	[ : 0.09	# : 0.07	h : 0.05	f : 0.05	i : 0.05	! : 0.01	e : 0.01	
= : 0.21	c : 0.13	d : 0.13	g : 0.11	f : 0.07	# : 0.07	[ : 0.05	h : 0.05	i : 0.05	! : 0.03	a : 0.01	b : 0.01	
= : 0.17	c : 0.09	d : 0.09	[ : 0.09	g : 0.09	! : 0.07	# : 0.07	h : 0.05	f : 0.05	i : 0.05	" : 0.05	b : 0.03	a : 0.01	
! : 0.17	= : 0.17	d : 0.13	a : 0.09	[ : 0.07	g : 0.05	f : 0.05	c : 0.05	" : 0.05	h : 0.03	# : 0.03	b : 0.01	i : 0.01	
! : 0.23	c : 0.21	[ : 0.17	d : 0.13	= : 0.07	g : 0.05	" : 0.05	f : 0.03	r : 0.01	
c : 0.30	b : 0.23	d : 0.13	! : 0.09	= : 0.07	g : 0.05	f : 0.03	a : 0.01	[ : 0.01	r : 0.01	
c : 0.32	b : 0.24	d : 0.11	a : 0.07	g : 0.05	= : 0.05	r : 0.03	[ : 0.03	f : 0.01	o : 0.01	
o : 0.59	c : 0.13	n : 0.05	m : 0.03	d : 0.03	r : 0.03	b : 0.03	a : 0.03	= : 0.01	
o : 0.63	n : 0.11	m : 0.09	c : 0.03	l : 0.03	r : 0.03	b : 0.01	d : 0.01	
o : 0.63	m : 0.11	n : 0.11	l : 0.09	r : 0.03	
o : 0.63	m : 0.11	n : 0.11	l : 0.09	r : 0.03	
o : 0.63	n : 0.11	m : 0.07	l : 0.05	b : 0.03	r : 0.03	d : 0.01	c : 0.01	
o : 0.61	c : 0.15	n : 0.05	b : 0.03	a : 0.03	d : 0.03	r : 0.03	m : 0.01	
c : 0.34	b : 0.23	d : 0.11	a : 0.05	g : 0.05	= : 0.05	o : 0.03	3 : 0.01	f : 0.01	] : 0.01	r : 0.01	2 : 0.01	
c : 0.32	b : 0.23	d : 0.13	2 : 0.05	g : 0.05	a : 0.05	= : 0.05	3 : 0.03	f : 0.01	r : 0.01	
] : 0.30	c : 0.19	2 : 0.13	d : 0.11	g : 0.07	= : 0.07	3 : 0.03	f : 0.01	a : 0.01	i : 0.01	
= : 0.19	2 : 0.15	d : 0.13	g : 0.11	] : 0.09	a : 0.07	f : 0.05	i : 0.05	h : 0.03	c : 0.03	3 : 0.03	
= : 0.19	c : 0.13	d : 0.13	g : 0.13	2 : 0.09	] : 0.07	h : 0.05	f : 0.05	i : 0.05	3 : 0.01	a : 0.01	b : 0.01	
= : 0.21	c : 0.19	d : 0.13	g : 0.13	f : 0.07	h : 0.05	2 : 0.05	b : 0.05	i : 0.05	3 : 0.01	
= : 0.21	c : 0.15	d : 0.15	g : 0.13	f : 0.07	i : 0.07	h : 0.05	2 : 0.05	] : 0.03	b : 0.03	
= : 0.21	d : 0.13	g : 0.09	3 : 0.07	f : 0.07	] : 0.07	2 : 0.07	i : 0.07	c : 0.05	h : 0.05	b : 0.03	e : 0.01	
= : 0.21	g : 0.09	i : 0.09	3 : 0.07	2 : 0.07	f : 0.07	c : 0.07	] : 0.07	d : 0.05	b : 0.05	h : 0.05	a : 0.01	e : 0.01	
= : 0.21	c : 0.11	3 : 0.09	i : 0.09	g : 0.07	] : 0.05	2 : 0.05	h : 0.05	b : 0.05	e : 0.05	d : 0.03	f : 0.03	4 : 0.01	6 : 0.01	
= : 0.19	c : 0.11	b : 0.09	f : 0.09	e : 0.09	i : 0.09	g : 0.07	] : 0.05	h : 0.05	2 : 0.03	d : 0.01	4 : 0.01	3 : 0.01	6 : 0.01	
= : 0.19	] : 0.15	e : 0.09	f : 0.07	i : 0.07	2 : 0.05	b : 0.05	g : 0.05	c : 0.05	d : 0.03	4 : 0.03	3 : 0.01	6 : 0.01	: : 0.01	h : 0.01	a : 0.01	
= : 0.17	e : 0.13	] : 0.09	2 : 0.07	a : 0.07	c : 0.07	f : 0.05	d : 0.05	g : 0.05	4 : 0.05	i : 0.03	3 : 0.03	6 : 0.01	: : 0.01	b : 0.01	
e : 0.17	] : 0.11	c : 0.11	g : 0.09	2 : 0.07	d : 0.07	f : 0.05	= : 0.05	4 : 0.03	i : 0.03	: : 0.03	3 : 0.03	a : 0.01	G : 0.01	6 : 0.01	b : 0.01	
e : 0.13	b : 0.11	d : 0.09	c : 0.09	: : 0.09	f : 0.07	g : 0.07	] : 0.07	2 : 0.03	4 : 0.03	= : 0.03	i : 0.03	3 : 0.03	G : 0.01	6 : 0.01	

#score	704.4461535883962
#seq	52
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_transcript_m1_run2.txt

#BEAR
eee####ggggggg[cccmmmmccc]ggggggg4444eee	chr5:652810-653057(+)$1	247	182	222	14.2075
iiiiiii"""dddd[cccmmmmcccdddd]iiiiiiiiif	chr19:24187170-24187408(-)$1	238	70	110	14.0376
gggg[bb"""ccc!!bboooooobb4444ccc333bb333	chr13:114564161-114564384(-)$1	223	93	133	14.9295
ca[dddd[ffffff[cccmmmmcccffffffdddd]a22c	chr19:4035383-4035647(+)$1	264	85	125	11.3929
deeeee$$$$$ccc[cccmmmmccc]ccc4444eeeee44	chr11:63743596-63743845(+)$1	249	129	169	14.0520
cc[dddd[a[bb!!ddddmmmmdddd]bb]a]dddd]ccc	chr14:21860272-21860501(-)$1	229	168	208	12.7293
a[===========[a[bbmmmmbba===========a]bb	chr1:228330434-228330684(+)$1	250	117	157	13.9739
##bb"""==========mmmm==========333bb4444	chr11:93454669-93454890(+)$1	221	11	51	14.9592
dddda[bbccc[bb[cccmmmmccc]bbccc333bb]a]d	chr18:47340333-47340629(+)$1	296	139	179	13.4486
[ccc[a[dddd####cccnnnnnccc]dddd]a]ccc]ii	chr19:2425550-2425840(-)$1	290	122	162	13.4955
e"""bbbbccc!!eeeeemmmmeeeee]ccc]bb]bb333	chr2:97544327-97544589(-)$1	262	133	173	11.9845
eeee[ccc!!a"""ddddnnnnndddd22a22ccceeeee	chr5:180668777-180668991(-)$1	214	119	159	12.7737
meeeee============mmmm============::bb[=	chr1:228331692-228331943(+)$1	251	12	52	11.2442
gggggg####dddd!!ccclllccc22dddd22ggggggg	chr17:33900576-33900873(+)$1	297	168	208	13.4792
ee[eeeee!!ccc[bboooooobb4444ccc22eeeeeee	chr17:73892406-73892773(-)$1	367	49	89	12.6664
ccaggggggg!!cccddddllldddd22ccc22ggggggg	chr11:811622-811842(+)$1	220	76	116	13.8469
ccc[bb$$$$$gggggggnnnnnggggggg4444bb]ccc	chr16:89359398-89359679(-)$1	281	178	218	12.0111
=========!!a"""bbnnnnnbb]a22==========22	chr19:1652298-1652554(-)$1	256	188	228	15.2403
====dddd[eeeee[ddddlllddddeeeee333dddd22	chr3:128209804-128210073(+)$1	269	158	198	12.0670
a"""eeeee!!ffffffmmmmffffff4444eeeee333a	chr21:46493860-46494122(+)$1	262	134	174	10.8744
gggggggggggggg[cccnnnnnccc22gggggggFFFFF	chrX:135961289-135961521(-)$1	232	65	105	11.7052
ddd"""bb$$$$$ddddnnnnndddd333bb333dddd]a	chr6:42750358-42750615(+)$1	257	184	224	13.0062
=====[bb[bbcccddddmmmmdddd]ccc]bb22bb===	chr19:1409593-1409835(+)$1	242	130	170	12.4695
eee!!dddd[cccxxxxxxxxxxxxxxxccc333dddd22	chr8:9629521-9629776(+)$1	255	138	178	10.8529
g[bb"""===========mmmm===========]bb]ggg	chr9:136132477-136132726(-)$1	249	87	127	14.8617
gg####ccc[ccc!!eeeeellleeeeeccc]cccggggg	chr7:5569349-5569609(-)$1	260	114	154	12.2222
ccc"""ggggggg!!ddddlllddddggggggg]ccc22f	chr9:139561881-139562132(+)$1	251	94	134	13.5987
eeeee[dddd[bb[cccooooooccc22bb]dddd]eeee	chrM:14216-14450(-)$1	234	77	117	11.6279
####iiiiiiiiicccooooooccc22iiiiiiiii4444	chr2:97532477-97532687(-)$1	210	28	68	14.4570
eeeee[bb"""gggggggnnnnnggggggg333bb]eeee	chr22:20068093-20068356(+)$1	263	196	236	12.7084
=!!gggggggcccaooooooa]ccc4444ggggggg333=	chr10:43902711-43902979(-)$1	268	165	205	13.1259
ee!!bbggggggg[cccnnnnnccc]ggggggg22bb22e	chr3:128216965-128217213(+)$1	248	55	95	12.6703
gggg!!ccc[cccrrrrrrrrrccc]ccc4444ggggggg	chr2:207026870-207027110(+)$1	240	18	58	12.2735
f####ccc$$$$$a[ccclllccc]a22cccffffff]ff	chr8:1792457-1792718(+)$1	261	58	98	13.2779
c!!==========[a!!ammmma22a]==========]cc	chr13:92000161-92000439(+)$1	278	169	209	15.3156
!dddd[ccc[bb!!cccnnnnnccc22bbccc]dddd22i	chr15:89444583-89444832(-)$1	249	85	125	13.2524
cc[dddd[a[bb!!ddddmmmmdddd]bb]a]dddd]ccc	chr14:21860242-21860472(-)$1	230	139	179	12.7293
!ccc!!eeeeegggggggmmmmggggggg333eeeee333	chr12:123994631-123994887(-)$1	256	41	81	13.3517
==[a!!bb!!ccc!!cccmmmmccc333ccc333bb333a	chr2:97551760-97552075(-)$1	315	250	290	18.3972
cc[ccc[a!!a[bb[cccnnnnnccc]bb]a4444a]ccc	chr19:1883808-1884089(-)$1	281	11	51	14.2418
fffff[eeeee####ccclllccc333eeeee333fffff	chr3:160232756-160232978(-)$1	222	29	69	12.5031
[ccc!!ccc[ccc!!bbmmmmbb333cccccc22ccc333	chr9:136132174-136132417(-)$1	243	149	189	13.9618
[ccc===========nnnnn===========22ccc333d	chr13:92000774-92001011(+)$1	237	66	106	13.0361
f"""dddd"""a[eeeeemmmmeeeee]a]ddddffffff	chr19:13106878-13107145(+)$1	267	165	205	11.4526
============"""cccmmmmccc4444===========	chr2:10538775-10539081(+)$1	306	30	70	17.2166
====dddd[a[cccddddllldddd333ccc]a]dddd::	chr3:160232787-160232998(-)$1	211	98	138	11.9206
[ccc"""ccc[ccc[bbmmmmbb]ccc]ccc22ccc]ccc	chr9:136150231-136150457(-)$1	226	131	171	12.9182
!dddd"""dddd!!ddddmmmmdddd22dddd22dddd22	chr22:35738312-35738576(+)$1	264	37	77	12.5259
e[dddd####ccc[ddddmmmmddddccc4444dddd22e	chr1:32827795-32828062(-)$1	267	107	147	14.0980
gggggg[ddddbb[ddddnnnnndddd]bb333dddd]gg	chr4:78740390-78740673(-)$1	283	38	78	12.4618
ff!!ffffffccceeeeemmmmeeeee4444ccc]fffff	chr21:38445860-38446107(+)$1	247	39	79	11.0841
gggggggbb!!ccc[cccmmmmccc22ccc333bb]gggg	chr19:1409876-1410155(+)$1	279	220	260	15.4658
c[bb[ccc"""bb!!ddddllldddd22bb333cccbbcc	chr11:123172086-123172331(+)$1	245	64	104	13.8601
!eeeeeccc[ccc!!cccnnnnnccc22cccccc]eeeee	chr19:34878270-34878489(+)$1	219	127	167	14.1675
e[bb[ccc[dddd!!cccnnnnnccc22dddd]ccc]bb]	chr19:2201529-2201806(+)$1	277	52	92	12.5656
eeeeeeeeee[a[a[cccmmmmccca]a]eeeee]eeeee	chr9:139565246-139565498(+)$1	252	101	141	12.4817
[gggggggbb!!bb[cccmmmmcccbb4444bb]gggggg	chr17:62501662-62501911(-)$1	249	72	112	12.8600

#otherMatches

#Seq PSSM
GCCAGGGCACCUUCGUGCCCAUGCAGGGAGGUGGGCAGGC	chr5:652810-653057(+)$1	247	182	222	14.2075
UGGGAGUCCCUCACCAAAGAACUUUGUGAAACUCUUAGCG	chr19:24187170-24187408(-)$1	238	70	110	14.0376
GGUCCCAGCCCCCUGCCAUUUUAGGAUGUGGGAAGUGCCU	chr13:114564161-114564384(-)$1	223	93	133	14.9295
ccgagccucuguuucugcauuuguaaaauggggcugguag	chr19:4035383-4035647(+)$1	264	85	125	11.3929
CGUGACCUUCCUCCUGCCAGCGGGCUGGAUCCUGUCACAC	chr11:63743596-63743845(+)$1	249	129	169	14.0520
CUCUUUCUCGUAAAUGCUGAGGGGCACUAGGUGAAGAAGU	chr14:21860272-21860501(-)$1	229	168	208	12.7293
GAUCCUCAGAAGGUGUGGCUCUCCCCCUUCUGAGGACGCA	chr1:228330434-228330684(+)$1	250	117	157	13.9739
UUUCUGAGAUCUGCUUUUAGUGAAGUGGAUCAAUGAUGAA	chr11:93454669-93454890(+)$1	221	11	51	14.9592
GGGGUGCGGUGAUUGUAGUAGGCUAGGGCGCUUUCGGGUC	chr18:47340333-47340629(+)$1	296	139	179	13.4486
GCCUCUGCCUGCUCUGCCGCCGAGGCCCGGGGAUGGGAUG	chr19:2425550-2425840(-)$1	290	122	162	13.4955
GAGUGCCUGCUAGGGAGUCACAGCUCCAAGUGAGUGCCAG	chr2:97544327-97544589(-)$1	262	133	173	11.9845
GCAUUGUCAGCCAAUCCCCAAGUGGGAGUGAGGACAUGUC	chr5:180668777-180668991(-)$1	214	119	159	12.7737
GCGUGUGCAUGUGUACCUUUGCAGGUACACAuguguggug	chr1:228331692-228331943(+)$1	251	12	52	11.2442
AUGAUCUCUUAAUCUUCUCUCUGAGCUGAUUCUGAUUGUG	chr17:33900576-33900873(+)$1	297	168	208	13.4792
GGGCGGCCGCUGGAGCUCUUCUGCCGGACCGAGGGCCGCU	chr17:73892406-73892773(-)$1	367	49	89	12.6664
GCCGGUCCAUCUGUGGCCUGCCAGGUUUCGCUUGUGGACC	chr11:811622-811842(+)$1	220	76	116	13.8469
CCAGGCGACUGUGGGCAGACCAGCUGCUCGGUGAGUGUGG	chr16:89359398-89359679(-)$1	281	178	218	12.0111
ggggggggcccccccgcuucaugccgccgcccccccccac	chr19:1652298-1652554(-)$1	256	188	228	15.2403
GCCCGGUUCUAGAGUGCUUCUCAGGCCUCUACUAAGCCGC	chr3:128209804-128210073(+)$1	269	158	198	12.0670
ggagcgcgggggcccgggagccugggcagCACCGCGAGAC	chr21:46493860-46494122(+)$1	262	134	174	10.8744
GCUGGGCUAUUAUAAUUAAAAUAUAAGCUAUGAUGAAUUU	chrX:135961289-135961521(-)$1	232	65	105	11.7052
CGCGAGCAGGGGGCAGGGAGGGCCUGGAGUGACGGCGGGC	chr6:42750358-42750615(+)$1	257	184	224	13.0062
UCCUGGCAAGUCCCCUGCAGGUGCGGUGGGUGCCAUGCAG	chr19:1409593-1409835(+)$1	242	130	170	12.4695
cauuauuagaccaggcaagaauuauuaauggaugcuaaau	chr8:9629521-9629776(+)$1	255	138	178	10.8529
AGCUCAUgugggcucgugggcucgugggcucgCCAGGUCG	chr9:136132477-136132726(-)$1	249	87	127	14.8617
GGGCCUGGCUUCCUGCCGCGCGCCGCGGGGACGCCUCCGA	chr7:5569349-5569609(-)$1	260	114	154	12.2222
GGAUUCCGGUUCCGGUGACACUGUCGGGGGCUGCUCCUCA	chr9:139561881-139562132(+)$1	251	94	134	13.5987
GAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGU	chrM:14216-14450(-)$1	234	77	117	11.6279
GCAUCUCUGGCAGCCUGGAUUGGGGUCCUGCUGGAGUGAA	chr2:97532477-97532687(-)$1	210	28	68	14.4570
UUGUCCACAGAAUGCUCACGGGUUGAGUGUCACGUAGAUA	chr22:20068093-20068356(+)$1	263	196	236	12.7084
GCCCGGGGACGAGCUGACGCGCCUCUUUAGUUCUCGAAAC	chr10:43902711-43902979(-)$1	268	165	205	13.1259
auaaguguuucuugaaaggaugUUuggagggauggaugga	chr3:128216965-128217213(+)$1	248	55	95	12.6703
ACCUUGAAGUAAUUUCCUCCACAUUCCUUGAAUAGGUCAA	chr2:207026870-207027110(+)$1	240	18	58	12.2735
UAGAUGACAAAGACAGGAGAAUCCAGGGGUCACCGGGGCC	chr8:1792457-1792718(+)$1	261	58	98	13.2779
guggccggggcgggUCUCGGCCGUUGGCCGCCCCGGCGUG	chr13:92000161-92000439(+)$1	278	169	209	15.3156
UGGGUGGGAUGAGGUGGGACUGCCAGAUCUUUGACCUCUC	chr15:89444583-89444832(-)$1	249	85	125	13.2524
CUCUUUCUCGUAAAUGCUGAGGGGCACUAGGUGAAGAAGU	chr14:21860242-21860472(-)$1	230	139	179	12.7293
GCUAAACCCAGCACUGCUCUGCAGCAGUGUCCCUGGGGCA	chr12:123994631-123994887(-)$1	256	41	81	13.3517
UGGGAAGGAUGAGGAGGGCAGUCCCAGGCUCUGGCCAGAC	chr2:97551760-97552075(-)$1	315	250	290	18.3972
GCGUUGGCAGUGAGGUGCAAAGGGUGGUUGGGUUGGGCAA	chr19:1883808-1884089(-)$1	281	11	51	14.2418
UUCUUAUAAGUUUAGUGUUUUAUAGGUACUUAAUAGAGAG	chr3:160232756-160232978(-)$1	222	29	69	12.5031
AGGCAACCGCAGACACAUACUUGACUUCUCGGCAGCUGUG	chr9:136132174-136132417(-)$1	243	149	189	13.9618
CGCUCCGCGUGGGCUUUGUUAGCCCGCGUGGGCAGCCUCG	chr13:92000774-92001011(+)$1	237	66	106	13.0361
GCGCGCACCCGGGCAGCGUGGUCGCUGGCAGUGUUUGCGG	chr19:13106878-13107145(+)$1	267	165	205	11.4526
CCUGCCCCGCCCUUAGAUCUGCAUCCCGUGGGUGGGGUGG	chr2:10538775-10539081(+)$1	306	30	70	17.2166
AUGUGUGUGUGCUUGUGGUGGCUAUGGAAAGGGGGCACUG	chr3:160232787-160232998(-)$1	211	98	138	11.9206
GGUCCCCGGGUCCUGGUGAGAGCGGGGUCCCUCGACGCCG	chr9:136150231-136150457(-)$1	226	131	171	12.9182
ACGGGCUGGGAGCAGGACUCUCGUCUCCCUCCACUCUGGG	chr22:35738312-35738576(+)$1	264	37	77	12.5259
GGGCGCUCCGCCGCGUCUGUGUGGACCGGGAAUGCGCGGC	chr1:32827795-32828062(-)$1	267	107	147	14.0980
CGGGCGGGAGCGAGGCCCGCCGUGGGUGUUUGUGUUUGCG	chr4:78740390-78740673(-)$1	283	38	78	12.4618
UGGUCUGGUGCCCCUUCGCGAGCGAGGCCCUGGGAUGCCG	chr21:38445860-38446107(+)$1	247	39	79	11.0841
CUUGGGGGAAGCUCUGCUUUUGAGUCUGAGAAGUCGUCCC	chr19:1409876-1410155(+)$1	279	220	260	15.4658
augaugacuggagaugcaugaaaugugacuaaugucucug	chr11:123172086-123172331(+)$1	245	64	104	13.8601
UUGACCUGGUGUUGUCAGUGAGUCUGUGGAUCCAGGGUCA	chr19:34878270-34878489(+)$1	219	127	167	14.1675
CUGUGCCCGCCGGCGGGUGUUCUGCCAUCUGGAGGGAAUC	chr19:2201529-2201806(+)$1	277	52	92	12.5656
GGGUGUGGGUGGGGAGCCGGCCGGCCGUGACCCAGCGCCU	chr9:139565246-139565498(+)$1	252	101	141	12.4817
UGGGGUGGCCGGGCAUUCUGUGGGAGCGAGGGGACCACUU	chr17:62501662-62501911(-)$1	249	72	112	12.8600

#DB
(((....(((((((.(((....))).)))))))....)))	chr5:652810-653057(+)$1	1	182	222	14.2075
(((((((...((((.(((....))))))).)))))))))(	chr19:24187170-24187408(-)$1	1	70	110	14.0376
((((.((...(((..((......))....)))...))...	chr13:114564161-114564384(-)$1	1	93	133	14.9295
((.((((.((((((.(((....))))))))))))).)..)	chr19:4035383-4035647(+)$1	1	85	125	11.3929
((((((.....(((.(((....))).)))....)))))..	chr11:63743596-63743845(+)$1	1	129	169	14.0520
((.((((.(.((..((((....)))).)).).)))).)))	chr14:21860272-21860501(-)$1	1	168	208	12.7293
(.(((((((((((.(.((....))))))))))))))).))	chr1:228330434-228330684(+)$1	1	117	157	13.9739
..((...((((((((((....))))))))))...))....	chr11:93454669-93454890(+)$1	1	11	51	14.9592
(((((.(((((.((.(((....))).)))))...)).).)	chr18:47340333-47340629(+)$1	1	139	179	13.4486
.(((.(.((((....(((.....))).)))).).))).))	chr19:2425550-2425840(-)$1	1	122	162	13.4955
(...(((((((..(((((....))))).))).)).))...	chr2:97544327-97544589(-)$1	1	133	173	11.9845
((((.(((..(...((((.....))))..)..))))))))	chr5:180668777-180668991(-)$1	1	119	159	12.7737
.)))))((((((((((((....))))))))))))..((.(	chr1:228331692-228331943(+)$1	1	12	52	11.2442
((((((....((((..(((...)))..))))..)))))))	chr17:33900576-33900873(+)$1	1	168	208	13.4792
((.(((((..(((.((......))....)))..)))))))	chr17:73892406-73892773(-)$1	1	49	89	12.6664
((((((((((..(((((((...))))..)))..)))))))	chr11:811622-811842(+)$1	1	76	116	13.8469
(((.((.....(((((((.....)))))))....)).)))	chr16:89359398-89359679(-)$1	1	178	218	12.0111
(((((((((..(...((.....)).)..))))))))))..	chr19:1652298-1652554(-)$1	1	188	228	15.2403
((((((((.(((((.((((...)))))))))...))))..	chr3:128209804-128210073(+)$1	1	158	198	12.0670
(...(((((..((((((....))))))....)))))...)	chr21:46493860-46494122(+)$1	1	134	174	10.8744
)))))))(((((((.(((.....)))..))))))))))))	chrX:135961289-135961521(-)$1	1	65	105	11.7052
(((...((.....((((.....))))...))...)))).)	chr6:42750358-42750615(+)$1	1	184	224	13.0062
(((((.((.(((((((((....)))).))).))..)))))	chr19:1409593-1409835(+)$1	1	130	170	12.4695
(((..((((.(((...............)))...))))..	chr8:9629521-9629776(+)$1	1	138	178	10.8529
(.((...(((((((((((....))))))))))).)).)))	chr9:136132477-136132726(-)$1	1	87	127	14.8617
((....(((.(((..(((((...)))))))).))))))))	chr7:5569349-5569609(-)$1	1	114	154	12.2222
(((...(((((((..((((...))))))))))).)))..)	chr9:139561881-139562132(+)$1	1	94	134	13.5987
(((((.((((.((.(((......)))..)).)))).))))	chrM:14216-14450(-)$1	1	77	117	11.6279
....((((((((((((......)))..)))))))))....	chr2:97532477-97532687(-)$1	1	28	68	14.4570
(((((.((...(((((((.....)))))))...)).))))	chr22:20068093-20068356(+)$1	1	196	236	12.7084
(..(((((((((((......).)))....)))))))...)	chr10:43902711-43902979(-)$1	1	165	205	13.1259
((..(((((((((.(((.....))).)))))))..))..)	chr3:128216965-128217213(+)$1	1	55	95	12.6703
((((..(((.(((.........))).)))....)))))))	chr2:207026870-207027110(+)$1	1	18	58	12.2735
(....(((.....(.(((...))).)..))))))))).))	chr8:1792457-1792718(+)$1	1	58	98	13.2779
(..((((((((((.(..(....)..).)))))))))).))	chr13:92000161-92000439(+)$1	1	169	209	15.3156
.((((.(((.((..(((.....)))..))))).))))..)	chr15:89444583-89444832(-)$1	1	85	125	13.2524
((.((((.(.((..((((....)))).)).).)))).)))	chr14:21860242-21860472(-)$1	1	139	179	12.7293
.(((..((((((((((((....)))))))...)))))...	chr12:123994631-123994887(-)$1	1	41	81	13.3517
((.(..((..(((..(((....)))...)))...))...)	chr2:97551760-97552075(-)$1	1	250	290	18.3972
((.(((.(..(.((.(((.....))).)).)....).)))	chr19:1883808-1884089(-)$1	1	11	51	14.2418
(((((.(((((....(((...)))...)))))...)))))	chr3:160232756-160232978(-)$1	1	29	69	12.5031
.(((..(((.(((..((....))...))))))..)))...	chr9:136132174-136132417(-)$1	1	149	189	13.9618
.((((((((((((((.....)))))))))))..)))...)	chr13:92000774-92001011(+)$1	1	66	106	13.0361
(...((((...(.(((((....))))).).))))))))))	chr19:13106878-13107145(+)$1	1	165	205	11.4526
((((((((((((...(((....)))....)))))))))))	chr2:10538775-10539081(+)$1	1	30	70	17.2166
))))((((.(.(((((((...))))...))).).))))..	chr3:160232787-160232998(-)$1	1	98	138	11.9206
.(((...(((.(((.((....)).))).)))..))).)))	chr9:136150231-136150457(-)$1	1	131	171	12.9182
.((((...((((..((((....))))..))))..))))..	chr22:35738312-35738576(+)$1	1	37	77	12.5259
(.((((....(((.((((....)))))))....))))..)	chr1:32827795-32828062(-)$1	1	107	147	14.0980
((((((.((((((.((((.....)))).))...)))).))	chr4:78740390-78740673(-)$1	1	38	78	12.4618
((..((((((((((((((....)))))....))).)))))	chr21:38445860-38446107(+)$1	1	39	79	11.0841
(((((((((..(((.(((....)))..)))...)).))))	chr19:1409876-1410155(+)$1	1	220	260	15.4658
(.((.(((...((..((((...))))..))...)))))))	chr11:123172086-123172331(+)$1	1	64	104	13.8601
.((((((((.(((..(((.....)))..)))))).)))))	chr19:34878270-34878489(+)$1	1	127	167	14.1675
(.((.(((.((((..(((.....)))..)))).))).)).	chr19:2201529-2201806(+)$1	1	52	92	12.5656
((((((((((.(.(.(((....)))).).))))).)))))	chr9:139565246-139565498(+)$1	1	101	141	12.4817
.(((((((((..((.(((....)))))....)).))))))	chr17:62501662-62501911(-)$1	1	72	112	12.8600

#PSSM
e : 0.19	c : 0.15	g : 0.14	= : 0.12	[ : 0.08	f : 0.07	! : 0.07	d : 0.05	a : 0.03	# : 0.03	i : 0.01	m : 0.01	
e : 0.19	c : 0.19	g : 0.14	= : 0.10	[ : 0.08	d : 0.07	# : 0.05	" : 0.05	! : 0.03	f : 0.03	i : 0.01	a : 0.01	
e : 0.15	g : 0.12	c : 0.12	[ : 0.10	= : 0.10	d : 0.08	b : 0.07	! : 0.07	" : 0.05	# : 0.05	i : 0.01	a : 0.01	f : 0.01	
g : 0.15	e : 0.14	d : 0.12	= : 0.12	c : 0.10	" : 0.08	# : 0.07	b : 0.07	! : 0.05	i : 0.01	[ : 0.01	a : 0.01	f : 0.01	
d : 0.15	e : 0.14	g : 0.12	= : 0.10	[ : 0.08	" : 0.08	! : 0.08	# : 0.05	b : 0.05	i : 0.03	f : 0.03	a : 0.01	c : 0.01	
d : 0.14	g : 0.12	e : 0.10	" : 0.10	[ : 0.10	= : 0.08	c : 0.08	b : 0.07	! : 0.07	# : 0.03	i : 0.03	a : 0.01	f : 0.01	
c : 0.15	d : 0.14	b : 0.12	g : 0.12	= : 0.10	e : 0.08	" : 0.07	# : 0.05	[ : 0.05	i : 0.03	$ : 0.03	f : 0.01	
c : 0.17	= : 0.14	g : 0.12	b : 0.12	d : 0.12	e : 0.08	" : 0.05	[ : 0.05	$ : 0.03	# : 0.03	i : 0.01	a : 0.01	f : 0.01	
= : 0.14	c : 0.14	g : 0.10	" : 0.08	d : 0.08	$ : 0.07	! : 0.07	[ : 0.07	e : 0.07	f : 0.03	a : 0.03	# : 0.03	b : 0.03	i : 0.01	
[ : 0.14	= : 0.12	! : 0.12	g : 0.10	" : 0.08	d : 0.08	$ : 0.07	e : 0.07	c : 0.05	f : 0.03	# : 0.03	b : 0.03	i : 0.01	a : 0.01	
c : 0.22	= : 0.12	d : 0.10	! : 0.08	g : 0.07	$ : 0.07	b : 0.07	[ : 0.07	e : 0.05	" : 0.05	a : 0.03	f : 0.01	i : 0.01	
c : 0.28	g : 0.12	= : 0.12	b : 0.10	d : 0.07	! : 0.05	a : 0.05	f : 0.03	[ : 0.03	# : 0.03	$ : 0.03	" : 0.01	e : 0.01	i : 0.01	
c : 0.29	g : 0.12	= : 0.10	b : 0.10	! : 0.08	d : 0.05	" : 0.05	f : 0.03	# : 0.03	$ : 0.03	[ : 0.03	e : 0.01	i : 0.01	
! : 0.21	c : 0.12	[ : 0.12	g : 0.08	= : 0.07	e : 0.07	d : 0.05	b : 0.05	" : 0.05	a : 0.05	f : 0.03	# : 0.03	x : 0.01	r : 0.01	
[ : 0.22	! : 0.15	d : 0.15	c : 0.08	= : 0.07	e : 0.05	g : 0.05	a : 0.03	# : 0.03	" : 0.03	b : 0.01	f : 0.01	x : 0.01	o : 0.01	r : 0.01	
c : 0.36	d : 0.22	b : 0.08	e : 0.07	= : 0.05	g : 0.05	! : 0.03	[ : 0.01	f : 0.01	x : 0.01	o : 0.01	r : 0.01	n : 0.01	
c : 0.36	d : 0.22	b : 0.08	e : 0.07	= : 0.05	o : 0.05	g : 0.05	f : 0.01	x : 0.01	r : 0.01	! : 0.01	n : 0.01	
c : 0.31	d : 0.21	o : 0.08	n : 0.08	m : 0.07	e : 0.07	g : 0.05	= : 0.03	b : 0.01	x : 0.01	r : 0.01	a : 0.01	
m : 0.47	n : 0.24	o : 0.08	d : 0.07	l : 0.05	c : 0.01	x : 0.01	e : 0.01	r : 0.01	
m : 0.47	n : 0.24	l : 0.14	o : 0.08	x : 0.01	e : 0.01	r : 0.01	
m : 0.47	n : 0.22	l : 0.15	o : 0.07	x : 0.01	a : 0.01	r : 0.01	= : 0.01	
m : 0.40	n : 0.22	l : 0.10	o : 0.07	= : 0.03	c : 0.03	b : 0.03	f : 0.01	x : 0.01	] : 0.01	r : 0.01	d : 0.01	
c : 0.31	d : 0.19	n : 0.15	b : 0.08	= : 0.07	e : 0.05	o : 0.03	f : 0.01	x : 0.01	l : 0.01	a : 0.01	g : 0.01	
c : 0.42	d : 0.22	b : 0.07	= : 0.07	e : 0.07	g : 0.05	f : 0.01	x : 0.01	2 : 0.01	3 : 0.01	] : 0.01	
c : 0.40	d : 0.22	= : 0.07	e : 0.07	g : 0.05	] : 0.03	3 : 0.03	b : 0.01	a : 0.01	4 : 0.01	f : 0.01	x : 0.01	2 : 0.01	
d : 0.22	c : 0.12	] : 0.08	= : 0.08	4 : 0.07	e : 0.07	2 : 0.07	a : 0.07	3 : 0.07	g : 0.05	f : 0.03	x : 0.01	b : 0.01	
2 : 0.22	] : 0.12	g : 0.10	c : 0.08	= : 0.08	e : 0.08	4 : 0.07	3 : 0.07	d : 0.05	f : 0.03	b : 0.03	x : 0.01	
2 : 0.17	4 : 0.12	g : 0.10	c : 0.10	= : 0.10	b : 0.08	] : 0.07	d : 0.05	e : 0.05	3 : 0.05	f : 0.01	x : 0.01	i : 0.01	a : 0.01	
c : 0.29	g : 0.12	b : 0.12	= : 0.12	4 : 0.10	d : 0.08	e : 0.03	f : 0.01	2 : 0.01	3 : 0.01	i : 0.01	a : 0.01	] : 0.01	
c : 0.28	= : 0.14	g : 0.12	4 : 0.10	] : 0.08	d : 0.07	b : 0.07	e : 0.05	f : 0.01	a : 0.01	i : 0.01	3 : 0.01	
c : 0.24	= : 0.14	4 : 0.12	g : 0.08	d : 0.08	3 : 0.08	a : 0.05	e : 0.05	i : 0.03	] : 0.03	f : 0.01	2 : 0.01	b : 0.01	
3 : 0.19	] : 0.10	= : 0.10	2 : 0.10	g : 0.08	c : 0.08	d : 0.08	4 : 0.08	e : 0.05	i : 0.03	b : 0.03	f : 0.01	
3 : 0.21	2 : 0.12	= : 0.10	g : 0.08	d : 0.08	4 : 0.08	c : 0.07	b : 0.05	e : 0.05	i : 0.03	a : 0.03	] : 0.03	f : 0.01	
3 : 0.14	d : 0.14	c : 0.14	e : 0.08	= : 0.08	] : 0.08	g : 0.08	2 : 0.07	4 : 0.05	b : 0.05	i : 0.03	f : 0.01	
d : 0.21	c : 0.15	b : 0.12	g : 0.10	e : 0.07	= : 0.07	] : 0.07	4 : 0.03	i : 0.03	3 : 0.03	2 : 0.03	f : 0.03	: : 0.01	
d : 0.17	b : 0.15	e : 0.12	c : 0.12	g : 0.10	] : 0.07	= : 0.07	f : 0.07	i : 0.03	4 : 0.01	: : 0.01	F : 0.01	a : 0.01	
e : 0.14	] : 0.14	d : 0.14	b : 0.10	g : 0.10	3 : 0.07	f : 0.07	4 : 0.05	c : 0.05	= : 0.05	a : 0.03	i : 0.01	F : 0.01	
e : 0.14	3 : 0.14	g : 0.12	2 : 0.08	c : 0.08	] : 0.08	d : 0.08	b : 0.05	= : 0.05	f : 0.05	4 : 0.03	i : 0.01	a : 0.01	F : 0.01	
2 : 0.15	3 : 0.14	g : 0.14	e : 0.12	c : 0.12	f : 0.07	4 : 0.05	i : 0.03	b : 0.03	] : 0.03	= : 0.03	[ : 0.01	F : 0.01	: : 0.01	
e : 0.15	c : 0.14	g : 0.14	f : 0.10	3 : 0.07	= : 0.07	2 : 0.07	4 : 0.05	a : 0.05	d : 0.03	i : 0.03	b : 0.01	F : 0.01	: : 0.01	] : 0.01	

#score	754.1413706415923
#seq	57
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_CDS_m1_run2.txt

#BEAR
iiiiiiiii!!ddddccclllccc]dddd]iiiiiiii	chr19:7675705-7675962(+)$1	257	119	157	14.5479
========[bb"""ccclllccc333bb==========	chr16:24809128-24809404(+)$1	276	92	130	15.3340
ccc[cccbb!!ddddoooooodddd333bb]ccc]ccc	chr3:31658412-31658673(+)$1	261	122	160	16.2231
b[==========="""bblllbb333===========]	chr3:13383066-13383353(-)$1	287	162	200	14.6170
ccc[dddd"""ddddnnnnndddd22dddd]ccc]ccc	chr20:35234360-35234580(+)$1	220	4	42	13.8567
:ggggggg[ffffffooooooffffffgggggggdddd	chr3:149629757-149630005(+)$1	248	166	204	12.3559
gg[ccc[ccc[ddddnnnnndddd22ccc]cccggggg	chr1:60280730-60281006(+)$1	276	153	191	15.0005
Cffffffccc[ddddooooooddddccc]fffffffff	chr11:93467651-93467897(-)$1	246	122	160	13.6036
bb[eeeee####cccooooooccc22eeeee333bbdd	chr22:24567855-24568110(+)$1	255	65	103	15.6596
[accc[iiiiiiiiiccclllccc]iiiiiiiii]ccc	chr11:66638377-66638651(-)$1	274	61	99	14.2969
ddd[eeeee[ccccccnnnnnccc333ccc22eeeee3	chr1:169076038-169076306(+)$1	268	104	142	13.1086
b[ccc!!dddd[cccooooooccc]dddd]cccbb::F	chr1:149901384-149901641(-)$1	257	94	132	12.6257
:ffffff[aaa[cccooooooccc]a]a]a]ffffff:	chr20:44463623-44463911(+)$1	288	109	147	13.9068
c[ggggggg!!ddddllldddd4444ggggggg]ccc]	chr3:52020392-52020650(+)$1	258	63	101	14.0295
eeeggggggg[ddddoooooodddd]ggggggg]eeee	chr1:1243002-1243275(-)$1	273	36	74	16.0594
[bb[dddd####cccoooooocccddddbb]ccc]ggg	chr2:219303341-219303609(+)$1	268	177	215	14.6818
effffff[ccc[cccooooooccc]ccc]ffffff22e	chr9:136661399-136661668(-)$1	269	219	257	15.2406
gggccc!!bb[ddddoooooodddd]bb22ccc]gggg	chr16:67234190-67234480(+)$1	290	203	241	15.4181
c[==========rrrrrrrrr==========22ccca3	chr11:62567703-62567969(-)$1	266	141	179	12.7318
!ccc!!iiiiiiiiiccclllccc]iiiiiiiii22cc	chr15:75722377-75722642(-)$1	265	179	217	14.1153
c[ggggggg[bbcccooooooccc22bbggggggg]cc	chr6:4126206-4126516(-)$1	310	66	104	17.5277
c!!cccccc"""cccooooooccc22ccc]ccc333cc	chr16:70710639-70710915(-)$1	276	95	133	19.0183
ccc!!ggggggg!!bboooooobb22ggggggg22ccc	chr2:192228853-192229135(+)$1	282	42	80	15.1338
ggggg[bb"""ddddoooooodddd333bb333ggggg	chr6:158499182-158499469(+)$1	287	117	155	16.6580
d[ggggggg"""ddddooooooddddggggggg333dd	chr20:55059130-55059389(+)$1	259	162	200	16.1790
e[ccc$$$$$eeeeeooooooeeeeeccc22eeeee44	chr13:99092969-99093238(+)$1	269	165	203	12.5732
=========="""bbnnnnnbb4444===========]	chr10:82275957-82276216(+)$1	259	171	209	15.3561
d[iiiiiiiii[cccooooooccc22iiiiiiiiiddd	chr4:152053375-152053620(-)$1	245	56	94	18.3474
iiiiiiiiibb[cccnnnnncccbb4444iiiiiiiii	chr11:68030981-68031292(-)$1	311	8	46	14.1689
:eeeeedddd!!cccooooooccc]dddd]eeeeehhh	chr4:99966318-99966602(+)$1	284	96	134	12.8287
===$$$$$ccc[ddddnnnnndddd]ccc]========	chr16:4498729-4499010(+)$1	281	196	234	14.3678
[ccc!!ggggggg!!ccclllccc22gggggggccc]c	chr2:216209492-216209735(+)$1	243	52	90	14.3972
cc[a!!ccc[ccc!!ccclllccc22cccccc22accc	chr16:4563549-4563801(-)$1	252	70	108	14.3038
========!!cccddddmmmmdddd]ccc333======	chr12:120568987-120569238(-)$1	251	14	52	14.1928
d"""ffffff"""cccmmmmccc333ffffff333ddd	chrX:53573526-53573796(-)$1	270	139	177	12.7934
fffff"""cccddddnnnnndddd22ccc]ffffffcc	chr2:25458441-25458677(-)$1	236	179	217	14.1081
!bb!!dddd"""cccooooooccc333ddddbb22ccc	chr5:131080121-131080380(-)$1	259	33	71	16.0815
eeggggggg####bbnnnnnbb4444ggggggg22eee	chr16:2049321-2049597(-)$1	276	19	57	13.3065
ggggggg!!ccc[aooooooa]ccc333gggggggDDD	chr3:47896589-47896879(-)$1	290	89	127	13.1859
iiiiiiiii!!ddddooooooddddiiiiiiiii:EEE	chr17:38287733-38288043(+)$1	310	157	195	13.4349
affffff[ccc[cccooooooccc22ccc]ffffff55	chr17:72439929-72440190(+)$1	261	78	116	15.3293
="""eeeee####bboooooobb4444eeeee======	chr9:130887372-130887624(-)$1	252	148	186	15.2441
ffffgggggggddddoooooodddd4444ggggggg]f	chr1:1721688-1721938(-)$1	250	203	241	16.2080
eeee####ccc[cccoooooocccccc4444eeeee22	chr17:27052181-27052472(-)$1	291	13	51	14.5858
cc!!a!!ffffffcccnnnnnccc22ffffff22a]cc	chr19:17973699-17973980(+)$1	281	57	95	13.6073
!!ffffff[a[ddddoooooodddd]a]ffffff4444	chr20:3576939-3577170(+)$1	231	164	202	15.5894
h[abb!!cccddddoooooodddd22ccc22bb]a]hh	chr16:28619472-28619734(-)$1	262	91	129	14.1943
gggggg[ccc!!ddddnnnnndddd]cccggggggg44	chr3:186502128-186502405(+)$1	277	40	78	15.1540
==[bb"""bb!!cccooooooccc22bb333bb]====	chr14:35560143-35560391(-)$1	248	145	183	17.1351
c[bb"""eeeee!!cccmmmmccc4444eeeee333bb	chr18:33610817-33611070(-)$1	253	110	148	11.5341

#otherMatches

#Seq PSSM
CCCCACACUGGGCGAGUCUCUGGCAUUGUGGGUGUGGG	chr19:7675705-7675962(+)$1	257	119	157	14.5479
AUUUUCUUUCUUCAGAGAGACUCACCAGAGGAAAAUGU	chr16:24809128-24809404(+)$1	276	92	130	15.3340
UGUUCCUUAGUGUCAUCUAUUUGACUUAUACAGGUACG	chr3:31658412-31658673(+)$1	261	122	160	16.2231
UGUCUUUAUAGUACAGUCCAGGAAGCUACUGUAGAGAA	chr3:13383066-13383353(-)$1	287	162	200	14.6170
GGCGGCGGAAGGAGGAGCCGCCUCAGCCGCAGCUGGCC	chr20:35234360-35234580(+)$1	220	4	42	13.8567
aacauuguauugagugagagaauuuaaacaauguguac	chr3:149629757-149630005(+)$1	248	166	204	12.3559
CCAGGGGGCCGAGGCGAGGAGCCUGGGGCGCCCGGUUC	chr1:60280730-60281006(+)$1	276	153	191	15.0005
AGUUUUCACAUCAUAUUUGUUUAUGUGUAGGAAACAGU	chr11:93467651-93467897(-)$1	246	122	160	13.6036
CACAGGCCUGAAGCUACCCCCAGCAUGGCCUCUCUGGG	chr22:24567855-24568110(+)$1	255	65	103	15.6596
UCCCCAUCAUCUUCAAGGCGGCCUAUGGGGGUGGAGGG	chr11:66638377-66638651(-)$1	274	61	99	14.2969
GGCAGGACCGGUGGCAGUUGGUGUAAGUACGGGGUCCG	chr1:169076038-169076306(+)$1	268	104	142	13.1086
CGCUGCUACCUGAGGGGAAGGCCUGAGGUCCAGGUAAG	chr1:149901384-149901641(-)$1	257	94	132	12.6257
AGGACCCGCCCUCCAAGUACGUGGUGAGUGAGGGUCUA	chr20:44463623-44463911(+)$1	288	109	147	13.9068
CAUGGAGCUGUUCGUGCAGCGGCCUGAGUUCCACGCCC	chr3:52020392-52020650(+)$1	258	63	101	14.0295
gcgccgcgGUCCUCGUGCCAGUGAGCGCCGCGGCCGCC	chr1:1243002-1243275(-)$1	273	36	74	16.0594
CGCUGCAGAGAAGACACCAGAGUCCUGUGCUUUCCCUC	chr2:219303341-219303609(+)$1	268	177	215	14.6818
AAGUUGAAUAUAGACAAGUCAGUUCAUGCUUAGCUCAU	chr9:136661399-136661668(-)$1	269	219	257	15.2406
GAGCUCAUGGAGCACGGCGUGGUGUCCUGGGAGACUCU	chr16:67234190-67234480(+)$1	290	203	241	15.4181
CCCCUCCUGGGGACCUUCACCCCCUGGGAGGCUGAGCU	chr11:62567703-62567969(-)$1	266	141	179	12.7318
AAACUUUUUUUAAUACUGUGUUAGAUAUUAAAAAUUGU	chr15:75722377-75722642(-)$1	265	179	217	14.1153
GUGGGAAUGAUCUGACUAACUUCACUGAUAUUCCCCCU	chr6:4126206-4126516(-)$1	310	66	104	17.5277
CCAGCAGCUCCAGCUCCCGGAAGUCCAGCAUGUGCAGG	chr16:70710639-70710915(-)$1	276	95	133	19.0183
UUUGUGAAUUGACCGGCAUUGAUCAAUCAGUUCUAGAA	chr2:192228853-192229135(+)$1	282	42	80	15.1338
GCGUCUGAUCACAGGUGAGGUCCUGACUUCCAUGGCGU	chr6:158499182-158499469(+)$1	287	117	155	16.6580
AUCAGAUGGUUUAGGGUCCUUUCCCUCCAUUUGUUCUU	chr20:55059130-55059389(+)$1	259	162	200	16.1790
CAGGCAGAACCCAGGCAAACUUCUGGGCCAGGGGCUUG	chr13:99092969-99093238(+)$1	269	165	203	12.5732
GAUUGGGCCCUUAACAUAGAGUGCAUGGGUCCAGUUUG	chr10:82275957-82276216(+)$1	259	171	209	15.3561
UCUUGUGUUUGUUUGUUUUUUUAAUGUAGGCACAAAGG	chr4:152053375-152053620(-)$1	245	56	94	18.3474
GCUGGGAGCCUCGGGGACCGCCCAGCCUUGCUCCCAGC	chr11:68030981-68031292(-)$1	311	8	46	14.1689
ACUUGUUCAGACCACAUAUGAGUGCCUGAUGCAAGCCA	chr4:99966318-99966602(+)$1	284	96	134	12.8287
agguuacugcucccuguaagucaggugguuccugcccg	chr16:4498729-4499010(+)$1	281	196	234	14.3678
CUGUCAAGUACACUCAGUCUAACUCUGUGUGCUACGCC	chr2:216209492-216209735(+)$1	243	52	90	14.3972
ACACAUGAGUGCAGAUGGCACCUACAUGCCUCCGGGUG	chr16:4563549-4563801(-)$1	252	70	108	14.3038
CUCCAGCGGGGUGGGCCCAUGGGCCUCAUGGGUGCUGG	chr12:120568987-120569238(-)$1	251	14	52	14.1928
CAAGCUCUUCUGAUCUGCUAAGACUUGGGGAGAAAGGA	chrX:53573526-53573796(-)$1	270	139	177	12.7934
UCCCACCUGACUUGUUUUCCACAAACGUCCUGGGAACA	chr2:25458441-25458677(-)$1	236	179	217	14.1081
ACUGAUUGUAUAUCAAGACUGUGAAAGACGAGGGAGAA	chr5:131080121-131080380(-)$1	259	33	71	16.0815
GGGUCCUUCCCCUGCCCCACGCCACAGGAGGACUUCCC	chr16:2049321-2049597(-)$1	276	19	57	13.3065
AGGUGGGAUCCCUCGAUAAUGUGGGCCACCUACCUGCA	chr3:47896589-47896879(-)$1	290	89	127	13.1859
GGUGGAUGGUUGGGAGCUGCAUUCCCCAUCCACUGGAU	chr17:38287733-38288043(+)$1	310	157	195	13.4349
GUGUGUACCAGCCCACUGAGAUGGCCCUGAUGCACAAA	chr17:72439929-72440190(+)$1	261	78	116	15.3293
UCCUGGAGCGCCCCCUAGCCUGGCCUGGCUCUGCAGCC	chr9:130887372-130887624(-)$1	252	148	186	15.2441
UCUGAUCCUUAUACAACCUCAUGUACAGAUGGGGAUAC	chr1:1721688-1721938(-)$1	250	203	241	16.2080
GGGAGAAGGAAGCUGCUUGUUCAGUUCAUGAUCUCUUG	chr17:27052181-27052472(-)$1	291	13	51	14.5858
GAGCCCACUCCAUUCAGAUCAUGAAGGUGGAGGAGAUC	chr19:17973699-17973980(+)$1	281	57	95	13.6073
AGAAGCAAAGUAGUUCAGUAAAACUUCAUUGUUUAAAC	chr20:3576939-3577170(+)$1	231	164	202	15.5894
UCCCCCAGACUCUGUUGGAUCAGAAGGUCAAGGUGAgg	chr16:28619472-28619734(-)$1	262	91	129	14.1943
GCAGUUGAGGUGGCCUGGAAGGGGUGUCUGACUGCAGU	chr3:186502128-186502405(+)$1	277	40	78	15.1540
GUUCCUUAAGAUAUAUCAUUUUGUUGCUGCCggugcag	chr14:35560143-35560391(-)$1	248	145	183	17.1351
GCUCUGUGUAAGUGUAGAAUCCUGAUCUCUUACCUUGA	chr18:33610817-33611070(-)$1	253	110	148	11.5341

#DB
(((((((((..(((((((...))).)))).))))))))	chr19:7675705-7675962(+)$1	1	119	157	14.5479
((((((((.((...(((...)))...))))))))))))	chr16:24809128-24809404(+)$1	1	92	130	15.3340
(((.(((((..((((......))))...)).))).)))	chr3:31658412-31658673(+)$1	1	122	160	16.2231
(.(((((((((((...((...))...))))))))))).	chr3:13383066-13383353(-)$1	1	162	200	14.6170
(((.((((...((((.....))))..)))).))).)))	chr20:35234360-35234580(+)$1	1	4	42	13.8567
.(((((((.((((((......)))))))))))))((((	chr3:149629757-149630005(+)$1	1	166	204	12.3559
((.(((.(((.((((.....))))..))).))))))))	chr1:60280730-60281006(+)$1	1	153	191	15.0005
)(((((((((.((((......))))))).))))))(((	chr11:93467651-93467897(-)$1	1	122	160	13.6036
((.(((((....(((......)))..)))))...))))	chr22:24567855-24568110(+)$1	1	65	103	15.6596
.((((.((((((((((((...))).))))))))).)))	chr11:66638377-66638651(-)$1	1	61	99	14.2969
(((.(((((.((((((.....)))...)))..))))).	chr1:169076038-169076306(+)$1	1	104	142	13.1086
(.(((..((((.(((......))).)))).)))))..)	chr1:149901384-149901641(-)$1	1	94	132	12.6257
.((((((.(((.(((......))).).).).)))))).	chr20:44463623-44463911(+)$1	1	109	147	13.9068
(.(((((((..((((...))))....))))))).))).	chr3:52020392-52020650(+)$1	1	63	101	14.0295
((((((((((.((((......)))).))))))).))))	chr1:1243002-1243275(-)$1	1	36	74	16.0594
.((.((((....(((......))))))))).))).)))	chr2:219303341-219303609(+)$1	1	177	215	14.6818
(((((((.(((.(((......))).))).))))))..)	chr9:136661399-136661668(-)$1	1	219	257	15.2406
((((((..((.((((......)))).))..))).))))	chr16:67234190-67234480(+)$1	1	203	241	15.4181
(.((((((((((.........))))))))))..)))).	chr11:62567703-62567969(-)$1	1	141	179	12.7318
.(((..((((((((((((...))).)))))))))..))	chr15:75722377-75722642(-)$1	1	179	217	14.1153
(.(((((((.(((((......)))..))))))))).))	chr6:4126206-4126516(-)$1	1	66	104	17.5277
(..((((((...(((......)))..))).)))...))	chr16:70710639-70710915(-)$1	1	95	133	19.0183
(((..(((((((..((......))..)))))))..)))	chr2:192228853-192229135(+)$1	1	42	80	15.1338
(((((.((...((((......))))...))...)))))	chr6:158499182-158499469(+)$1	1	117	155	16.6580
(.(((((((...((((......)))))))))))...))	chr20:55059130-55059389(+)$1	1	162	200	16.1790
(.(((.....(((((......))))))))..)))))..	chr13:99092969-99093238(+)$1	1	165	203	12.5732
((((((((((...((.....))....))))))))))).	chr10:82275957-82276216(+)$1	1	171	209	15.3561
(.(((((((((.(((......)))..))))))))))))	chr4:152053375-152053620(-)$1	1	56	94	18.3474
(((((((((((.(((.....)))))....)))))))))	chr11:68030981-68031292(-)$1	1	8	46	14.1689
.(((((((((..(((......))).)))).)))))(((	chr4:99966318-99966602(+)$1	1	96	134	12.8287
(((.....(((.((((.....)))).))).))))))))	chr16:4498729-4499010(+)$1	1	196	234	14.3678
.(((..(((((((..(((...)))..)))))))))).)	chr2:216209492-216209735(+)$1	1	52	90	14.3972
((.(..(((.(((..(((...)))..))))))..))))	chr16:4563549-4563801(-)$1	1	70	108	14.3038
((((((((..(((((((....)))).)))...))))))	chr12:120568987-120569238(-)$1	1	14	52	14.1928
(...((((((...(((....)))...))))))...)))	chrX:53573526-53573796(-)$1	1	139	177	12.7934
(((((...(((((((.....))))..))).))))))))	chr2:25458441-25458677(-)$1	1	179	217	14.1081
.((..((((...(((......)))...))))))..)))	chr5:131080121-131080380(-)$1	1	33	71	16.0815
(((((((((....((.....))....)))))))..)))	chr16:2049321-2049597(-)$1	1	19	57	13.3065
(((((((..(((.(......).)))...)))))))(((	chr3:47896589-47896879(-)$1	1	89	127	13.1859
(((((((((..((((......))))))))))))).(((	chr17:38287733-38288043(+)$1	1	157	195	13.4349
(((((((.(((.(((......)))..))).))))))..	chr17:72439929-72440190(+)$1	1	78	116	15.3293
(...(((((....((......))....)))))))))))	chr9:130887372-130887624(-)$1	1	148	186	15.2441
(((((((((((((((......))))....))))))).)	chr1:1721688-1721938(-)$1	1	203	241	16.2080
((((....(((.(((......))))))....)))))..	chr17:27052181-27052472(-)$1	1	13	51	14.5858
((..(..(((((((((.....)))..))))))..).))	chr19:17973699-17973980(+)$1	1	57	95	13.6073
..((((((.(.((((......)))).).))))))....	chr20:3576939-3577170(+)$1	1	164	202	15.5894
(.(((..(((((((......))))..)))..)).).))	chr16:28619472-28619734(-)$1	1	91	129	14.1943
((((((.(((..((((.....)))).))))))))))..	chr3:186502128-186502405(+)$1	1	40	78	15.1540
((.((...((..(((......)))..))...)).))))	chr14:35560143-35560391(-)$1	1	145	183	17.1351
(.((...(((((..(((....)))....)))))...))	chr18:33610817-33611070(-)$1	1	110	148	11.5341

#PSSM
c : 0.19	= : 0.12	g : 0.10	e : 0.10	d : 0.08	i : 0.06	b : 0.06	: : 0.06	[ : 0.06	! : 0.06	f : 0.04	C : 0.02	a : 0.02	h : 0.02	
[ : 0.19	c : 0.14	g : 0.12	f : 0.12	= : 0.10	e : 0.08	i : 0.06	b : 0.06	! : 0.04	" : 0.04	a : 0.02	d : 0.02	
g : 0.18	c : 0.16	f : 0.14	= : 0.12	i : 0.08	[ : 0.08	e : 0.06	b : 0.06	! : 0.04	" : 0.04	d : 0.02	a : 0.02	
g : 0.18	c : 0.16	f : 0.14	= : 0.10	i : 0.08	[ : 0.08	e : 0.06	! : 0.06	b : 0.06	" : 0.04	$ : 0.02	a : 0.02	
g : 0.19	c : 0.14	f : 0.14	= : 0.10	! : 0.10	i : 0.08	e : 0.08	d : 0.04	b : 0.04	$ : 0.02	# : 0.02	a : 0.02	" : 0.02	
g : 0.19	f : 0.12	! : 0.12	= : 0.10	i : 0.08	c : 0.08	e : 0.08	d : 0.06	" : 0.06	[ : 0.04	$ : 0.04	# : 0.02	
g : 0.19	i : 0.12	f : 0.12	= : 0.10	d : 0.08	! : 0.08	c : 0.06	e : 0.06	" : 0.06	[ : 0.04	$ : 0.04	b : 0.02	# : 0.02	
g : 0.18	i : 0.12	c : 0.12	= : 0.10	d : 0.10	e : 0.08	[ : 0.06	f : 0.06	b : 0.04	! : 0.04	$ : 0.04	" : 0.04	# : 0.02	
c : 0.21	g : 0.16	i : 0.12	[ : 0.06	b : 0.06	= : 0.06	e : 0.06	d : 0.06	" : 0.04	# : 0.04	! : 0.04	f : 0.04	a : 0.02	$ : 0.02	
c : 0.19	! : 0.10	" : 0.10	b : 0.08	# : 0.08	g : 0.08	= : 0.06	f : 0.06	i : 0.06	[ : 0.06	d : 0.04	a : 0.04	$ : 0.02	e : 0.02	
c : 0.18	! : 0.14	" : 0.14	[ : 0.10	# : 0.08	b : 0.06	i : 0.06	g : 0.06	= : 0.04	f : 0.04	d : 0.04	e : 0.04	a : 0.02	
d : 0.27	[ : 0.16	" : 0.12	# : 0.08	c : 0.08	! : 0.06	= : 0.04	f : 0.04	i : 0.04	g : 0.04	e : 0.04	b : 0.02	
d : 0.34	c : 0.34	" : 0.06	f : 0.04	i : 0.04	! : 0.04	# : 0.04	= : 0.02	r : 0.02	e : 0.02	g : 0.02	[ : 0.02	
d : 0.36	c : 0.34	! : 0.08	b : 0.06	" : 0.04	i : 0.04	f : 0.02	r : 0.02	e : 0.02	a : 0.02	
c : 0.38	d : 0.34	b : 0.08	i : 0.04	! : 0.04	o : 0.04	" : 0.02	f : 0.02	r : 0.02	e : 0.02	
o : 0.52	c : 0.19	n : 0.12	d : 0.08	" : 0.02	l : 0.02	r : 0.02	b : 0.02	
o : 0.56	n : 0.19	c : 0.14	b : 0.02	l : 0.02	r : 0.02	d : 0.02	m : 0.02	
o : 0.56	n : 0.19	c : 0.10	m : 0.06	l : 0.04	b : 0.02	r : 0.02	
o : 0.56	n : 0.19	l : 0.14	m : 0.06	d : 0.02	r : 0.02	
o : 0.56	n : 0.19	l : 0.14	m : 0.06	d : 0.02	r : 0.02	
o : 0.52	l : 0.12	d : 0.10	n : 0.08	c : 0.06	b : 0.04	m : 0.04	r : 0.02	a : 0.02	
c : 0.48	d : 0.32	b : 0.08	o : 0.04	f : 0.02	= : 0.02	e : 0.02	] : 0.02	
c : 0.50	d : 0.32	b : 0.06	4 : 0.06	f : 0.02	= : 0.02	e : 0.02	
c : 0.44	d : 0.32	4 : 0.08	3 : 0.06	b : 0.04	f : 0.02	= : 0.02	e : 0.02	
2 : 0.27	d : 0.25	] : 0.14	3 : 0.10	4 : 0.10	c : 0.04	f : 0.02	= : 0.02	e : 0.02	b : 0.02	
2 : 0.27	3 : 0.16	4 : 0.14	] : 0.12	d : 0.10	c : 0.06	i : 0.06	f : 0.02	a : 0.02	= : 0.02	e : 0.02	
c : 0.25	g : 0.12	d : 0.10	3 : 0.10	b : 0.08	i : 0.08	4 : 0.08	= : 0.06	f : 0.06	e : 0.02	] : 0.02	a : 0.02	
c : 0.25	g : 0.14	d : 0.12	b : 0.08	i : 0.08	4 : 0.08	3 : 0.06	= : 0.06	e : 0.04	f : 0.04	a : 0.02	] : 0.02	
c : 0.21	g : 0.18	d : 0.10	= : 0.08	i : 0.08	b : 0.06	] : 0.06	e : 0.06	4 : 0.06	f : 0.06	2 : 0.02	3 : 0.02	
g : 0.21	] : 0.16	f : 0.10	i : 0.10	= : 0.08	b : 0.06	e : 0.06	2 : 0.06	d : 0.04	c : 0.04	3 : 0.04	a : 0.02	4 : 0.02	
g : 0.21	f : 0.14	i : 0.12	= : 0.10	c : 0.10	] : 0.08	e : 0.08	2 : 0.06	3 : 0.06	d : 0.02	4 : 0.02	
g : 0.21	c : 0.16	f : 0.16	i : 0.12	e : 0.10	= : 0.08	3 : 0.06	b : 0.06	2 : 0.04	
g : 0.21	c : 0.14	i : 0.12	= : 0.12	f : 0.12	e : 0.10	3 : 0.06	2 : 0.06	b : 0.06	
g : 0.14	i : 0.12	= : 0.12	f : 0.12	c : 0.10	3 : 0.10	] : 0.10	2 : 0.10	e : 0.08	b : 0.02	
= : 0.14	g : 0.14	f : 0.10	e : 0.10	] : 0.08	2 : 0.08	3 : 0.08	i : 0.06	c : 0.06	a : 0.06	b : 0.04	d : 0.02	: : 0.02	4 : 0.02	
c : 0.18	= : 0.14	g : 0.12	e : 0.10	f : 0.08	d : 0.06	] : 0.06	3 : 0.06	i : 0.04	2 : 0.04	b : 0.02	: : 0.02	h : 0.02	D : 0.02	E : 0.02	4 : 0.02	
c : 0.23	= : 0.14	d : 0.10	g : 0.08	e : 0.06	4 : 0.06	i : 0.04	f : 0.04	2 : 0.04	h : 0.04	] : 0.04	: : 0.02	a : 0.02	D : 0.02	E : 0.02	5 : 0.02	b : 0.02	
c : 0.23	= : 0.10	d : 0.10	g : 0.08	] : 0.06	e : 0.06	4 : 0.06	i : 0.04	f : 0.04	3 : 0.04	h : 0.04	F : 0.02	: : 0.02	D : 0.02	E : 0.02	5 : 0.02	2 : 0.02	b : 0.02	

#score	733.959394650992
#seq	50
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_transcript_m3_run1.txt

#BEAR
:eeeeennnnneeeee	chr12:6619595-6619818(+)$1	223	18	34	8.6264
""cccooooooccc33	chr22:38882100-38882389(-)$1	289	163	179	5.9405
eeeeeooooooeeeee	chr5:111497178-111497415(+)$1	237	187	203	10.4412
eeeeeeemmmmeeeee	chr2:133015207-133015423(-)$1	216	180	196	9.3617
::eeeeemmmmeeeee	chr13:92788009-92788232(+)$1	223	11	27	7.5394
ggeeeeemmmmeeeee	chr20:26189693-26189913(-)$1	220	26	42	9.1217
eeeeeooooooeeeee	chr11:122929515-122929718(-)$1	203	154	170	10.4412
eeeeeooooooeeeee	chr16:447647-447876(+)$1	229	144	160	10.4412
)eeeeennnnneeeee	chr11:17096175-17096386(-)$1	211	126	142	9.2092
eeebboooooobb]ee	chr8:48650427-48650635(-)$1	208	177	193	6.7710
eeeeeooooooeeeee	chrM:14361-14591(-)$1	230	31	47	10.4412
[aeeeeemmmmeeeee	chr2:133015127-133015371(-)$1	244	128	144	9.3730
eeeeeeeellleeeee	chr5:40832658-40832929(-)$1	271	252	268	9.0039
ggddddoooooodddd	chrM:1453-1659(+)$1	206	157	173	6.5141
eeeeeooooooeeeee	chr11:122929530-122929741(-)$1	211	177	193	10.4412
ff:eeeeellleeeee	chr9:33952672-33952926(-)$1	254	25	41	7.1310
""eeeeemmmmeeeee	chr19:1409153-1409394(+)$1	241	10	26	9.2660
[ddddoooooodddd]	chr16:50903257-50903491(-)$1	234	62	78	7.2618
!!eeeeemmmmeeeee	chr11:62621991-62622218(-)$1	227	130	146	9.4369
ffeeeeemmmmeeeee	chr1:109289280-109289510(+)$1	230	10	26	8.9540
"""eeeeellleeeee	chr19:8550833-8551095(+)$1	262	160	176	8.3034
[eeeeeooooooeeee	chr3:10362532-10362784(-)$1	252	144	160	10.2850
!ddddooooooddddc	chr10:135272188-135272430(+)$1	242	151	167	7.0733
ee[bboooooobbeee	chr1:63833241-63833466(+)$1	225	207	223	6.8713
FFeeeeemmmmeeeee	chr11:122929979-122930223(-)$1	244	6	22	8.5352
F:eeeeemmmmeeeee	chr11:17097263-17097497(-)$1	234	204	220	7.9893
)eeeeennnnneeeee	chr11:17096135-17096355(-)$1	220	95	111	9.2092
[eeeeennnnneeeee	chr1:228285804-228286039(+)$1	235	70	86	9.6293
[ddddoooooodddd]	chr8:142425774-142426031(+)$1	257	121	137	7.2618
[eeeeemmmmeeeee]	chr19:46701103-46701356(-)$1	253	108	124	8.3948
)eeeeennnnneeeee	chr11:17096155-17096375(-)$1	220	115	131	9.2092
)eeeeennnnneeeee	chr17:20772643-20772926(+)$1	283	245	261	9.2092
[eeeeemmmmeeeee]	chr3:141153138-141153372(+)$1	234	145	161	8.3948
[eeeeeooooooeeee	chr17:18965291-18965553(+)$1	262	17	33	10.2850
::eeeeemmmmeeeee	chr2:133015223-133015439(-)$1	216	196	212	7.5394

#otherMatches

#Seq PSSM
GGAACAGGGCAUGUUC	chr12:6619595-6619818(+)$1	223	18	34	8.6264
AUGGUCAAGGCACCUA	chr22:38882100-38882389(-)$1	289	163	179	5.9405
UGGUUUCUCUUAGCCA	chr5:111497178-111497415(+)$1	237	187	203	10.4412
GUGAGAAAGCCUUCUC	chr2:133015207-133015423(-)$1	216	180	196	9.3617
AGAAAGUUCAAACUUU	chr13:92788009-92788232(+)$1	223	11	27	7.5394
CCUGUGAGCGAUCGCG	chr20:26189693-26189913(-)$1	220	26	42	9.1217
AGUAAUUUGUUUUAUU	chr11:122929515-122929718(-)$1	203	154	170	10.4412
CUGACUGGGACGUCAG	chr16:447647-447876(+)$1	229	144	160	10.4412
aguuuccaccagaaau	chr11:17096175-17096386(-)$1	211	126	142	9.2092
GCUGUGCCACGACGAG	chr8:48650427-48650635(-)$1	208	177	193	6.7710
GGGUGUGUUAUUAUUC	chrM:14361-14591(-)$1	230	31	47	10.4412
GUGAGAAAGCCUUCUC	chr2:133015127-133015371(-)$1	244	128	144	9.3730
AGGCAUGGAUUCCGUG	chr5:40832658-40832929(-)$1	271	252	268	9.0039
UAGCUUAACACAAAGC	chrM:1453-1659(+)$1	206	157	173	6.5141
AGUAAUUUGUUUUAUU	chr11:122929530-122929741(-)$1	211	177	193	10.4412
agcgagacccugucuc	chr9:33952672-33952926(-)$1	254	25	41	7.1310
UUGACUUGGCAGGGUC	chr19:1409153-1409394(+)$1	241	10	26	9.2660
gcagggucaggccugg	chr16:50903257-50903491(-)$1	234	62	78	7.2618
UUGUUUAUGAAUAAGC	chr11:62621991-62622218(-)$1	227	130	146	9.4369
ACGCCGCUUCUGCGGC	chr1:109289280-109289510(+)$1	230	10	26	8.9540
ACAAUCUGGAGCGGAU	chr19:8550833-8551095(+)$1	262	160	176	8.3034
UGGAGCCGUUCAGCUC	chr3:10362532-10362784(-)$1	252	144	160	10.2850
UAAGAUCAAAUUCUUC	chr10:135272188-135272430(+)$1	242	151	167	7.0733
GGCGACCCGUCUCCCA	chr1:63833241-63833466(+)$1	225	207	223	6.8713
AGCAUCAACCCUGAUG	chr11:122929979-122930223(-)$1	244	6	22	8.5352
AUGUAUAAAAGUAUAC	chr11:17097263-17097497(-)$1	234	204	220	7.9893
aguuuccaccagaaau	chr11:17096135-17096355(-)$1	220	95	111	9.2092
UUUUAUUUAAUGUAAA	chr1:228285804-228286039(+)$1	235	70	86	9.6293
ggcauggggGGAUGUG	chr8:142425774-142426031(+)$1	257	121	137	7.2618
Gggccaggugugguug	chr19:46701103-46701356(-)$1	253	108	124	8.3948
aguuuccaccagaaau	chr11:17096155-17096375(-)$1	220	115	131	9.2092
gguuuugggaaaagac	chr17:20772643-20772926(+)$1	283	245	261	9.2092
GAGAAGGGGACUUCUG	chr3:141153138-141153372(+)$1	234	145	161	8.3948
agagagguagcguuuu	chr17:18965291-18965553(+)$1	262	17	33	10.2850
GUGAGAAAGCCUUCUC	chr2:133015223-133015439(-)$1	216	196	212	7.5394

#DB
.(((((.....)))))	chr12:6619595-6619818(+)$1	1	18	34	8.6264
..(((......)))..	chr22:38882100-38882389(-)$1	1	163	179	5.9405
(((((......)))))	chr5:111497178-111497415(+)$1	1	187	203	10.4412
))(((((....)))))	chr2:133015207-133015423(-)$1	1	180	196	9.3617
..(((((....)))))	chr13:92788009-92788232(+)$1	1	11	27	7.5394
(((((((....)))))	chr20:26189693-26189913(-)$1	1	26	42	9.1217
(((((......)))))	chr11:122929515-122929718(-)$1	1	154	170	10.4412
(((((......)))))	chr16:447647-447876(+)$1	1	144	160	10.4412
.(((((.....)))))	chr11:17096175-17096386(-)$1	1	126	142	9.2092
(((((......)).))	chr8:48650427-48650635(-)$1	1	177	193	6.7710
(((((......)))))	chrM:14361-14591(-)$1	1	31	47	10.4412
.((((((....)))))	chr2:133015127-133015371(-)$1	1	128	144	9.3730
)))(((((...)))))	chr5:40832658-40832929(-)$1	1	252	268	9.0039
((((((......))))	chrM:1453-1659(+)$1	1	157	173	6.5141
(((((......)))))	chr11:122929530-122929741(-)$1	1	177	193	10.4412
)).(((((...)))))	chr9:33952672-33952926(-)$1	1	25	41	7.1310
..(((((....)))))	chr19:1409153-1409394(+)$1	1	10	26	9.2660
.((((......)))).	chr16:50903257-50903491(-)$1	1	62	78	7.2618
..(((((....)))))	chr11:62621991-62622218(-)$1	1	130	146	9.4369
(((((((....)))))	chr1:109289280-109289510(+)$1	1	10	26	8.9540
...(((((...)))))	chr19:8550833-8551095(+)$1	1	160	176	8.3034
.(((((......))))	chr3:10362532-10362784(-)$1	1	144	160	10.2850
.((((......)))))	chr10:135272188-135272430(+)$1	1	151	167	7.0733
((.((......)))))	chr1:63833241-63833466(+)$1	1	207	223	6.8713
(((((((....)))))	chr11:122929979-122930223(-)$1	1	6	22	8.5352
).(((((....)))))	chr11:17097263-17097497(-)$1	1	204	220	7.9893
.(((((.....)))))	chr11:17096135-17096355(-)$1	1	95	111	9.2092
.(((((.....)))))	chr1:228285804-228286039(+)$1	1	70	86	9.6293
.((((......)))).	chr8:142425774-142426031(+)$1	1	121	137	7.2618
.(((((....))))).	chr19:46701103-46701356(-)$1	1	108	124	8.3948
.(((((.....)))))	chr11:17096155-17096375(-)$1	1	115	131	9.2092
.(((((.....)))))	chr17:20772643-20772926(+)$1	1	245	261	9.2092
.(((((....))))).	chr3:141153138-141153372(+)$1	1	145	161	8.3948
.(((((......))))	chr17:18965291-18965553(+)$1	1	17	33	10.2850
..(((((....)))))	chr2:133015223-133015439(-)$1	1	196	212	7.5394

#PSSM
e : 0.25	[ : 0.22	) : 0.11	: : 0.08	" : 0.08	g : 0.05	f : 0.05	! : 0.05	F : 0.05	
e : 0.54	" : 0.08	: : 0.08	d : 0.08	g : 0.05	f : 0.05	a : 0.02	! : 0.02	F : 0.02	
e : 0.77	d : 0.11	c : 0.02	: : 0.02	" : 0.02	[ : 0.02	
e : 0.80	d : 0.11	b : 0.05	c : 0.02	
e : 0.80	d : 0.11	b : 0.05	c : 0.02	
e : 0.65	o : 0.31	d : 0.02	
o : 0.40	e : 0.37	n : 0.17	m : 0.05	
o : 0.40	m : 0.34	n : 0.17	e : 0.08	
o : 0.40	m : 0.34	n : 0.17	l : 0.08	
o : 0.40	m : 0.34	n : 0.17	l : 0.08	
o : 0.40	m : 0.28	n : 0.17	l : 0.08	e : 0.05	
e : 0.74	o : 0.08	d : 0.08	b : 0.05	c : 0.02	
e : 0.80	d : 0.11	b : 0.05	c : 0.02	
e : 0.82	d : 0.11	c : 0.02	] : 0.02	
e : 0.85	d : 0.11	3 : 0.02	
e : 0.80	] : 0.11	3 : 0.02	d : 0.02	c : 0.02	

#score	303.9080441110856
#seq	35
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_transcript_m3_run1.txt

#BEAR
::ccctttttttttttccc	chr2:220403899-220404230(-)$1	331	173	192	19.9666
fffwwwwwwwwwwwwwwff	chr14:35098863-35099210(-)$1	347	135	154	20.4089
=====ttttttttttt===	chr16:29818720-29819009(+)$1	289	56	75	21.5738
:cccuuuuuuuuuuuuccc	chr19:49469804-49470046(+)$1	242	3	22	21.8659
gg[ayyyyyyyyyyyyyyy	chr17:66526481-66526752(+)$1	271	218	237	19.9978
ddyyyyyyyyyyyyyyyyd	chr14:101200879-101201145(+)$1	266	73	92	19.8493
dddwwwwwwwwwwwwwwdd	chr19:3208334-3208601(+)$1	267	78	97	20.9060
eeeeuuuuuuuuuuuueee	chr16:30079903-30080121(+)$1	218	41	60	22.1957
ffffftttttttttttfff	chr12:53845982-53846262(+)$1	280	248	267	20.6350
ddddtttttttttttdddd	chr3:129034653-129034936(-)$1	283	124	143	20.8878
eeewwwwwwwwwwwwwwee	chr19:1257371-1257689(+)$1	318	18	37	20.8831
::ccctttttttttttccc	chr17:80708516-80708887(+)$1	371	346	365	19.9666
!cccuuuuuuuuuuuuccc	chr1:236140672-236141020(-)$1	348	95	114	22.8932
====uuuuuuuuuuuu===	chr17:7215525-7215802(+)$1	277	79	98	22.6229
"cccuuuuuuuuuuuuccc	chr1:97271548-97271916(+)$1	368	299	318	22.7829
!cccuuuuuuuuuuuuccc	chr20:43058530-43058814(+)$1	284	122	141	22.8932
eeeeuuuuuuuuuuuueee	chr8:145065323-145065559(+)$1	236	183	202	22.1957
e[bbwwwwwwwwwwwwwwb	chr2:68479301-68479572(-)$1	271	167	186	20.2120
eeewwwwwwwwwwwwwwee	chr5:138941159-138941480(+)$1	321	61	80	20.8831
!!ccctttttttttttccc	chr14:103575900-103576241(+)$1	341	293	312	22.0362
[cccuuuuuuuuuuuuccc	chr1:226033017-226033316(+)$1	299	53	72	22.8745
ddddtttttttttttdddd	chr19:12907696-12907979(-)$1	283	30	49	20.8878
"cccuuuuuuuuuuuuccc	chr20:62694958-62695298(+)$1	340	200	219	22.7829
d[bbtttttttttttbb]d	chrX:152953789-152954111(+)$1	322	180	199	20.4214
dddduuuuuuuuuuuuddd	chr12:49434841-49435115(-)$1	274	232	251	22.2778
=====ttttttttttt===	chr11:2151135-2151352(-)$1	217	85	104	21.5738
ffffvvvvvvvvvvvvvff	chr7:75614060-75614349(+)$1	289	62	81	21.4975
[ddddtttttttttttddd	chr12:110784688-110784958(+)$1	270	86	105	21.3460
cccvvvvvvvvvvvvvccc	chr5:10353793-10354105(+)$1	312	18	37	22.1552
c!!attttttttttta22c	chr20:2442226-2442551(-)$1	325	200	219	21.2012
eeeevvvvvvvvvvvvvee	chr11:2159486-2159703(-)$1	217	115	134	22.0343
dddwwwwwwwwwwwwwwdd	chr19:13055066-13055339(+)$1	273	93	112	20.9060
=====ttttttttttt===	chr11:2151099-2151311(-)$1	212	44	63	21.5738
ffffvvvvvvvvvvvvvff	chr19:14203527-14203827(-)$1	300	268	287	21.4975
====uuuuuuuuuuuu===	chr11:2152393-2152609(-)$1	216	177	196	22.6229
ccyyyyyyyyyyyyyyyyc	chr11:62392743-62392993(-)$1	250	9	28	19.9676
hhhhhttttttttttthhh	chr11:61048318-61048699(-)$1	381	97	116	19.8236
eeeettttttttttteeee	chr22:33255626-33255864(+)$1	238	54	73	20.8428
e[bbuuuuuuuuuuuubbe	chr17:6917495-6917799(+)$1	304	232	251	21.7052
cccvvvvvvvvvvvvvccc	chr17:41610535-41610795(-)$1	260	96	115	22.1552
hhbbvvvvvvvvvvvvvbb	chrX:53221567-53221862(-)$1	295	56	75	21.0735
:cccuuuuuuuuuuuuccc	chr17:79910493-79910721(-)$1	228	187	206	21.8659
eeeevvvvvvvvvvvvvee	chr17:44202228-44202489(-)$1	261	174	193	22.0343
cccwwwwwwwwwwwwwwcc	chr7:5352340-5352640(-)$1	300	120	139	21.1811
eeeeettttttttttteee	chr17:26694288-26694548(-)$1	260	89	108	21.2409
hhhhuuuuuuuuuuuuhhh	chr20:47575917-47576241(+)$1	324	285	304	21.1042
dddduuuuuuuuuuuuddd	chr11:2160122-2160343(-)$1	221	140	159	22.2778
dddduuuuuuuuuuuuddd	chr11:2160102-2160305(-)$1	203	102	121	22.2778
eeeevvvvvvvvvvvvvee	chr14:101193235-101193479(+)$1	244	88	107	22.0343
eeeeettttttttttteee	chr17:26694218-26694488(-)$1	270	29	48	21.2409
dddddtttttttttttddd	chr20:30754567-30754839(+)$1	272	166	185	21.2860
!cccuuuuuuuuuuuuccc	chr11:65622431-65622687(-)$1	256	217	236	22.8932
ggggvvvvvvvvvvvvvgg	chr12:121418545-121418814(-)$1	269	105	124	22.0719
ffffftttttttttttfff	chr12:6438966-6439298(-)$1	332	145	164	20.6350
b[bbvvvvvvvvvvvvvbb	chr10:121355958-121356253(-)$1	295	61	80	21.1639
dddduuuuuuuuuuuuddd	chr11:2160091-2160295(-)$1	204	92	111	22.2778
eeeettttttttttteeee	chr20:62695219-62695530(+)$1	311	8	27	20.8428
====vvvvvvvvvvvvv==	chr5:176524661-176524941(+)$1	280	203	222	22.3214
dddduuuuuuuuuuuuddd	chr17:79801123-79801350(-)$1	227	138	157	22.2778
cc[auuuuuuuuuuuua]c	chr5:149781598-149781855(-)$1	257	33	52	22.7107
ff[auuuuuuuuuuuua]f	chr5:172378868-172379138(+)$1	270	37	56	22.2664
dddduuuuuuuuuuuuddd	chr17:79801150-79801382(-)$1	232	170	189	22.2778
gggggtttttttttttggg	chr6:31913198-31913486(+)$1	288	224	243	21.1755
[cccuuuuuuuuuuuuccc	chr2:242168740-242169011(-)$1	271	101	120	22.8745
bbbbvvvvvvvvvvvvvbb	chr12:53298479-53298795(-)$1	316	45	64	20.8550
ddyyyyyyyyyyyyyyyyd	chr11:65622260-65622511(-)$1	251	203	222	19.8493

#otherMatches

#Seq PSSM
UUCUCCCCCAAAACCAGAG	chr2:220403899-220404230(-)$1	331	173	192	19.9666
CCCUCCUUCCCCAUCCUGG	chr14:35098863-35099210(-)$1	347	135	154	20.4089
CUAUGAAGAUGCCGACCAU	chr16:29818720-29819009(+)$1	289	56	75	21.5738
UGGGUUUCUAAUUUCUCCC	chr19:49469804-49470046(+)$1	242	3	22	21.8659
UUCCUGUCUGUUUAUAUAU	chr17:66526481-66526752(+)$1	271	218	237	19.9978
AGCUCAACAAGAAAACCCC	chr14:101200879-101201145(+)$1	266	73	92	19.8493
GCAAAUCCCCGUUCCCCUG	chr19:3208334-3208601(+)$1	267	78	97	20.9060
GUUGUUACCCUGACCCCAA	chr16:30079903-30080121(+)$1	218	41	60	22.1957
GCUCGGGUCCUAGUCACGA	chr12:53845982-53846262(+)$1	280	248	267	20.6350
cgccuuccucuucccggcg	chr3:129034653-129034936(-)$1	283	124	143	20.8878
AAGucuuuuuuucuuuucu	chr19:1257371-1257689(+)$1	318	18	37	20.8831
ccgaccccccauccccguc	chr17:80708516-80708887(+)$1	371	346	365	19.9666
ACAGACUUAUACACCCCUG	chr1:236140672-236141020(-)$1	348	95	114	22.8932
CCCAAACCCCUUUAGAUgg	chr17:7215525-7215802(+)$1	277	79	98	22.6229
AUGAUCCAUGACCACCUCA	chr1:97271548-97271916(+)$1	368	299	318	22.7829
AGCUCCCUUCUUCCCUAGC	chr20:43058530-43058814(+)$1	284	122	141	22.8932
GGGCCCCUUACCCACAGCC	chr8:145065323-145065559(+)$1	236	183	202	22.1957
ccgccuccccucccccacg	chr2:68479301-68479572(-)$1	271	167	186	20.2120
GGCCCUCAGCCCGUCCCGC	chr5:138941159-138941480(+)$1	321	61	80	20.8831
CCUGCCCCCUCCCCCAGCA	chr14:103575900-103576241(+)$1	341	293	312	22.0362
CCACCUCCCCCCACAAGUG	chr1:226033017-226033316(+)$1	299	53	72	22.8745
CACGAUUAAGCCCAACGUG	chr19:12907696-12907979(-)$1	283	30	49	20.8878
UGCCUUCCUCCAUCCCGGC	chr20:62694958-62695298(+)$1	340	200	219	22.7829
ugaccgccgcccccCGUGA	chrX:152953789-152954111(+)$1	322	180	199	20.4214
GGGGAAUUCCACACUACCC	chr12:49434841-49435115(-)$1	274	232	251	22.2778
GGUCCGAAGCUCUGUGGGA	chr11:2151135-2151352(-)$1	217	85	104	21.5738
GUGCCCUACGUCCUACCGC	chr7:75614060-75614349(+)$1	289	62	81	21.4975
CAGUAUUGUUUUGGUUUGC	chr12:110784688-110784958(+)$1	270	86	105	21.3460
CGCCCCUCCCCCUCCCGUG	chr5:10353793-10354105(+)$1	312	18	37	22.1552
AUAGUCCUUUUAUCUCCUU	chr20:2442226-2442551(-)$1	325	200	219	21.2012
UCGCACAUUCGGCCCCCGC	chr11:2159486-2159703(-)$1	217	115	134	22.0343
GGGCUCUUCUCAUUUCACC	chr19:13055066-13055339(+)$1	273	93	112	20.9060
GGUCCGAAGCUCUGUGGGA	chr11:2151099-2151311(-)$1	212	44	63	21.5738
GGCUCACGCUUAACUCCAG	chr19:14203527-14203827(-)$1	300	268	287	21.4975
ACCCGUAGGGUGGGCGGGG	chr11:2152393-2152609(-)$1	216	177	196	22.6229
CUUCUCUUUCCCUUAUUUA	chr11:62392743-62392993(-)$1	250	9	28	19.9676
CAGGACAUAGCCCUCCUUC	chr11:61048318-61048699(-)$1	381	97	116	19.8236
AAUGAAAAACUACUCCAUU	chr22:33255626-33255864(+)$1	238	54	73	20.8428
ACUGAAUCCCUUCUCCCAU	chr17:6917495-6917799(+)$1	304	232	251	21.7052
GACAAAUCGCCAUCAAGUC	chr17:41610535-41610795(-)$1	260	96	115	22.1552
GGGACUCUCCUCCCUUCUC	chrX:53221567-53221862(-)$1	295	56	75	21.0735
CGGCCCCACCCAUCAAGCC	chr17:79910493-79910721(-)$1	228	187	206	21.8659
cuguuucuuccucaucugc	chr17:44202228-44202489(-)$1	261	174	193	22.0343
ucuucuuccuccACCACAG	chr7:5352340-5352640(-)$1	300	120	139	21.1811
UGUGGACCCUCCCUACCCA	chr17:26694288-26694548(-)$1	260	89	108	21.2409
guggcgcaaucucaaauca	chr20:47575917-47576241(+)$1	324	285	304	21.1042
GCCUGUCCCCCUCCCGAGG	chr11:2160122-2160343(-)$1	221	140	159	22.2778
GCCUGUCCCCCUCCCGAGG	chr11:2160102-2160305(-)$1	203	102	121	22.2778
CGCAACCAGAAGCCCAGUG	chr14:101193235-101193479(+)$1	244	88	107	22.0343
UGUGGACCCUCCCUACCCA	chr17:26694218-26694488(-)$1	270	29	48	21.2409
CUCACCCAUCAAACCAGUG	chr20:30754567-30754839(+)$1	272	166	185	21.2860
CUGCCAACUUCUAACCGCA	chr11:65622431-65622687(-)$1	256	217	236	22.8932
GCGCCUCAUUCUCUCCCGU	chr12:121418545-121418814(-)$1	269	105	124	22.0719
ugggcuucagucccgugcc	chr12:6438966-6439298(-)$1	332	145	164	20.6350
GCGGCCAUUUUGUUCAucc	chr10:121355958-121356253(-)$1	295	61	80	21.1639
GCCUGUCCCCCUCCCGAGG	chr11:2160091-2160295(-)$1	204	92	111	22.2778
CGCUCCGUCUCUUACAGCG	chr20:62695219-62695530(+)$1	311	8	27	20.8428
GUUCUGCUCGGCUUCUUGG	chr5:176524661-176524941(+)$1	280	203	222	22.3214
GGCCUCUCUACAGCACGGC	chr17:79801123-79801350(-)$1	227	138	157	22.2778
UCUCUCCAGUCCCCAUGUG	chr5:149781598-149781855(-)$1	257	33	52	22.7107
UUUCUCUACAGCCAUCGUG	chr5:172378868-172379138(+)$1	270	37	56	22.2664
GGCCUCUCUACAGCACGGC	chr17:79801150-79801382(-)$1	232	170	189	22.2778
AAUUAAUAAAAAUCAAUGG	chr6:31913198-31913486(+)$1	288	224	243	21.1755
GCUCUUCCCCCUUCCCGAG	chr2:242168740-242169011(-)$1	271	101	120	22.8745
ACCCAGAAGUCCUACAAGG	chr12:53298479-53298795(-)$1	316	45	64	20.8550
UAAAAAAAAAAAAGACAAU	chr11:65622260-65622511(-)$1	251	203	222	19.8493

#DB
..(((...........)))	chr2:220403899-220404230(-)$1	1	173	192	19.9666
(((..............))	chr14:35098863-35099210(-)$1	1	135	154	20.4089
(((((...........)))	chr16:29818720-29819009(+)$1	1	56	75	21.5738
.(((............)))	chr19:49469804-49470046(+)$1	1	3	22	21.8659
((.(...............	chr17:66526481-66526752(+)$1	1	218	237	19.9978
((................)	chr14:101200879-101201145(+)$1	1	73	92	19.8493
(((..............))	chr19:3208334-3208601(+)$1	1	78	97	20.9060
((((............)))	chr16:30079903-30080121(+)$1	1	41	60	22.1957
(((((...........)))	chr12:53845982-53846262(+)$1	1	248	267	20.6350
((((...........))))	chr3:129034653-129034936(-)$1	1	124	143	20.8878
(((..............))	chr19:1257371-1257689(+)$1	1	18	37	20.8831
..(((...........)))	chr17:80708516-80708887(+)$1	1	346	365	19.9666
.(((............)))	chr1:236140672-236141020(-)$1	1	95	114	22.8932
((((............)))	chr17:7215525-7215802(+)$1	1	79	98	22.6229
.(((............)))	chr1:97271548-97271916(+)$1	1	299	318	22.7829
.(((............)))	chr20:43058530-43058814(+)$1	1	122	141	22.8932
((((............)))	chr8:145065323-145065559(+)$1	1	183	202	22.1957
(.((..............)	chr2:68479301-68479572(-)$1	1	167	186	20.2120
(((..............))	chr5:138941159-138941480(+)$1	1	61	80	20.8831
..(((...........)))	chr14:103575900-103576241(+)$1	1	293	312	22.0362
.(((............)))	chr1:226033017-226033316(+)$1	1	53	72	22.8745
((((...........))))	chr19:12907696-12907979(-)$1	1	30	49	20.8878
.(((............)))	chr20:62694958-62695298(+)$1	1	200	219	22.7829
(.((...........)).)	chrX:152953789-152954111(+)$1	1	180	199	20.4214
((((............)))	chr12:49434841-49435115(-)$1	1	232	251	22.2778
(((((...........)))	chr11:2151135-2151352(-)$1	1	85	104	21.5738
((((.............))	chr7:75614060-75614349(+)$1	1	62	81	21.4975
.((((...........)))	chr12:110784688-110784958(+)$1	1	86	105	21.3460
(((.............)))	chr5:10353793-10354105(+)$1	1	18	37	22.1552
(..(...........)..)	chr20:2442226-2442551(-)$1	1	200	219	21.2012
((((.............))	chr11:2159486-2159703(-)$1	1	115	134	22.0343
(((..............))	chr19:13055066-13055339(+)$1	1	93	112	20.9060
(((((...........)))	chr11:2151099-2151311(-)$1	1	44	63	21.5738
((((.............))	chr19:14203527-14203827(-)$1	1	268	287	21.4975
((((............)))	chr11:2152393-2152609(-)$1	1	177	196	22.6229
((................)	chr11:62392743-62392993(-)$1	1	9	28	19.9676
(((((...........)))	chr11:61048318-61048699(-)$1	1	97	116	19.8236
((((...........))))	chr22:33255626-33255864(+)$1	1	54	73	20.8428
(.((............)))	chr17:6917495-6917799(+)$1	1	232	251	21.7052
(((.............)))	chr17:41610535-41610795(-)$1	1	96	115	22.1552
((((.............))	chrX:53221567-53221862(-)$1	1	56	75	21.0735
.(((............)))	chr17:79910493-79910721(-)$1	1	187	206	21.8659
((((.............))	chr17:44202228-44202489(-)$1	1	174	193	22.0343
(((..............))	chr7:5352340-5352640(-)$1	1	120	139	21.1811
(((((...........)))	chr17:26694288-26694548(-)$1	1	89	108	21.2409
((((............)))	chr20:47575917-47576241(+)$1	1	285	304	21.1042
((((............)))	chr11:2160122-2160343(-)$1	1	140	159	22.2778
((((............)))	chr11:2160102-2160305(-)$1	1	102	121	22.2778
((((.............))	chr14:101193235-101193479(+)$1	1	88	107	22.0343
(((((...........)))	chr17:26694218-26694488(-)$1	1	29	48	21.2409
)((((...........)))	chr20:30754567-30754839(+)$1	1	166	185	21.2860
.(((............)))	chr11:65622431-65622687(-)$1	1	217	236	22.8932
((((.............))	chr12:121418545-121418814(-)$1	1	105	124	22.0719
(((((...........)))	chr12:6438966-6439298(-)$1	1	145	164	20.6350
(.((.............))	chr10:121355958-121356253(-)$1	1	61	80	21.1639
((((............)))	chr11:2160091-2160295(-)$1	1	92	111	22.2778
((((...........))))	chr20:62695219-62695530(+)$1	1	8	27	20.8428
((((.............))	chr5:176524661-176524941(+)$1	1	203	222	22.3214
((((............)))	chr17:79801123-79801350(-)$1	1	138	157	22.2778
((.(............).)	chr5:149781598-149781855(-)$1	1	33	52	22.7107
((.(............).)	chr5:172378868-172379138(+)$1	1	37	56	22.2664
((((............)))	chr17:79801150-79801382(-)$1	1	170	189	22.2778
(((((...........)))	chr6:31913198-31913486(+)$1	1	224	243	21.1755
.(((............)))	chr2:242168740-242169011(-)$1	1	101	120	22.8745
((((.............))	chr12:53298479-53298795(-)$1	1	45	64	20.8550
((................)	chr11:65622260-65622511(-)$1	1	203	222	19.8493

#PSSM
d : 0.21	e : 0.19	f : 0.09	= : 0.09	c : 0.09	: : 0.06	! : 0.06	g : 0.04	[ : 0.04	h : 0.04	" : 0.03	b : 0.03	
c : 0.21	d : 0.21	e : 0.16	f : 0.09	= : 0.09	[ : 0.06	g : 0.04	h : 0.04	: : 0.03	! : 0.03	b : 0.01	
c : 0.22	d : 0.18	e : 0.16	= : 0.09	b : 0.09	f : 0.07	[ : 0.04	y : 0.04	h : 0.03	g : 0.03	! : 0.01	
c : 0.18	d : 0.15	e : 0.13	w : 0.09	= : 0.09	b : 0.09	a : 0.06	f : 0.06	y : 0.04	v : 0.03	h : 0.03	g : 0.03	
u : 0.34	v : 0.18	w : 0.10	t : 0.09	y : 0.06	c : 0.04	= : 0.04	f : 0.03	d : 0.03	e : 0.03	h : 0.01	g : 0.01	
u : 0.34	t : 0.30	v : 0.18	w : 0.10	y : 0.06	
u : 0.34	t : 0.30	v : 0.18	w : 0.10	y : 0.06	
u : 0.34	t : 0.30	v : 0.18	w : 0.10	y : 0.06	
u : 0.34	t : 0.30	v : 0.18	w : 0.10	y : 0.06	
u : 0.34	t : 0.30	v : 0.18	w : 0.10	y : 0.06	
u : 0.34	t : 0.30	v : 0.18	w : 0.10	y : 0.06	
u : 0.34	t : 0.30	v : 0.18	w : 0.10	y : 0.06	
u : 0.34	t : 0.30	v : 0.18	w : 0.10	y : 0.06	
u : 0.34	t : 0.30	v : 0.18	w : 0.10	y : 0.06	
u : 0.34	t : 0.30	v : 0.18	w : 0.10	y : 0.06	
u : 0.34	t : 0.21	v : 0.18	w : 0.10	y : 0.06	d : 0.03	e : 0.03	b : 0.01	a : 0.01	
c : 0.21	d : 0.15	v : 0.15	w : 0.10	e : 0.09	= : 0.07	y : 0.06	f : 0.03	b : 0.03	h : 0.03	a : 0.03	2 : 0.01	g : 0.01	
c : 0.22	d : 0.18	e : 0.16	= : 0.09	f : 0.07	y : 0.06	b : 0.06	] : 0.04	h : 0.03	g : 0.03	w : 0.01	2 : 0.01	
c : 0.27	d : 0.22	e : 0.18	f : 0.09	= : 0.09	b : 0.06	h : 0.03	g : 0.03	y : 0.01	

#score	1419.9154405717784
#seq	66
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_transcript_m3_run1.txt

#BEAR
!!cccwwwwwwwwwwwwwwccc22	chr9:131456203-131456422(+)$1	219	110	134	23.1517
hhhhhhvvvvvvvvvvvvvhhhhh	chr12:95879553-95879793(+)$1	240	53	77	22.2301
eeeeevvvvvvvvvvvvveeeee3	chr1:245025819-245026038(-)$1	219	59	83	23.7129
ggggggvvvvvvvvvvvvvggggg	chr13:107196254-107196511(-)$1	257	189	213	24.3711
=======ttttttttttt======	chr8:124381985-124382263(-)$1	278	231	255	22.9377
"ccc[bbvvvvvvvvvvvvvbb22	chr17:66508066-66508390(+)$1	324	233	257	21.4015
eeeeeeettttttttttteeeee:	chr2:27656174-27656453(+)$1	279	254	278	21.2251
ffffffuuuuuuuuuuuuffffff	chr3:50099303-50099570(+)$1	267	230	254	22.9454
ddd[ccctttttttttttccc]dd	chr5:148880458-148880792(-)$1	334	196	220	22.5167
ff!!ccctttttttttttcccfff	chr2:190339838-190340189(+)$1	351	151	175	22.9794
ggggggvvvvvvvvvvvvvggggg	chr2:203757207-203757526(-)$1	319	20	44	24.3711
[ddddvvvvvvvvvvvvvddddgg	chr20:34317289-34317550(-)$1	261	87	111	23.6093
fffffftttttttttttffffff7	chr6:4032681-4033029(+)$1	348	86	110	21.1573
iiiiiivvvvvvvvvvvvviiiii	chr1:245019660-245019977(-)$1	317	120	144	24.1802
ccc[bbuuuuuuuuuuuubb]ccc	chr8:123831161-123831492(+)$1	331	287	311	22.8660
[ddddvvvvvvvvvvvvvdddd]a	chr16:50655448-50655720(+)$1	272	156	180	23.5614
gggggguuuuuuuuuuuugggggg	chr2:102475356-102475568(+)$1	212	13	37	23.8938
fffffwwwwwwwwwwwwwwfffff	chr20:3765563-3765887(-)$1	324	135	159	22.2705
ffffffuuuuuuuuuuuuffffff	chr17:38555191-38555443(-)$1	252	140	164	22.9454
:ddddvvvvvvvvvvvvvddddFF	chr19:8528388-8528675(+)$1	287	245	269	21.7364
ccccc[attttttttttta]ccc3	chr7:134632261-134632621(+)$1	360	14	38	23.4471
=====wwwwwwwwwwwwww=====	chr1:185275539-185275882(-)$1	343	55	79	23.1131
[a!!ccctttttttttttccca]f	chr3:142761886-142762160(+)$1	274	135	159	23.2460
gg[cccuuuuuuuuuuuuccc]gg	chr5:37396491-37396783(+)$1	292	191	215	24.2619
=:cccvvvvvvvvvvvvvcccccc	chr2:232327818-232328124(-)$1	306	98	122	23.1473
b!!ddddtttttttttttdddd22	chr1:23637595-23637897(-)$1	302	116	140	22.0289
a"""bbuuuuuuuuuuuubb333a	chr7:134215376-134215666(+)$1	290	24	48	22.8248
ggg!!bbtttttttttttbbgggg	chr16:3785930-3786209(-)$1	279	194	218	22.3616
dd[cccuuuuuuuuuuuucccddd	chr16:2808371-2808651(+)$1	280	122	146	23.3992
:ddddwwwwwwwwwwwwwwdddd:	chr2:99977990-99978254(+)$1	264	127	151	20.4740
ii[cccuuuuuuuuuuuuccc]ii	chr11:65267476-65267748(+)$1	272	206	230	24.1572
####ccctttttttttttccc555	chr16:57200902-57201201(-)$1	299	49	73	20.6691
ffffffuuuuuuuuuuuuffffff	chr7:139094218-139094506(+)$1	288	215	239	22.9454
dd!!bbvvvvvvvvvvvvvbb22d	chr2:232325130-232325372(-)$1	242	132	156	22.7151
"""cccuuuuuuuuuuuuccc]ee	chr6:26156530-26156836(+)$1	306	142	166	23.8480
$eeeeeuuuuuuuuuuuueeeee3	chr12:58112685-58113014(+)$1	329	188	212	23.2742
fffffwwwwwwwwwwwwwwfffff	chr2:232326575-232326825(-)$1	250	206	230	22.2705
e[dddduuuuuuuuuuuudddd]e	chr2:170668075-170668365(+)$1	290	201	225	22.9420
ffffffuuuuuuuuuuuuffffff	chr9:127998781-127999070(-)$1	289	247	271	22.9454
cceeeeettttttttttteeeee]	chr2:21244158-21244429(-)$1	271	184	208	22.3576
ffffffvvvvvvvvvvvvvfffff	chr3:40503027-40503252(+)$1	225	180	204	23.4442
hhhhhhuuuuuuuuuuuuhhhhhh	chr14:35264769-35265075(-)$1	306	21	45	21.5485
::ddddvvvvvvvvvvvvvdddd:	chr3:121412778-121413100(-)$1	322	128	152	20.6655
$ddddvvvvvvvvvvvvvdddd33	chr11:65267244-65267466(+)$1	222	161	185	23.6147
eeeeevvvvvvvvvvvvveeeee2	chr20:39709724-39709986(+)$1	262	83	107	23.5278
'a[ccctttttttttttccc]a66	chr8:103300282-103300596(-)$1	314	158	182	21.2908
d[eeeeettttttttttteeeee]	chr1:24975309-24975621(+)$1	312	168	192	22.3127
ccc[bbvvvvvvvvvvvvvbb]cc	chr17:78263492-78263744(+)$1	252	79	103	23.3324
hhh[bbuuuuuuuuuuuubb]hhh	chr20:34319759-34319992(-)$1	233	182	206	21.9043
gggggguuuuuuuuuuuugggggg	chr7:138205424-138205814(+)$1	390	357	381	23.8938
""eeeeettttttttttteeeee2	chr10:102289471-102289723(-)$1	252	80	104	22.3581
gggggwwwwwwwwwwwwwwggggg	chr14:73566274-73566563(+)$1	289	78	102	23.1668
dd!!bbvvvvvvvvvvvvvbb22d	chr2:232325097-232325330(-)$1	233	90	114	22.7151
fffffwwwwwwwwwwwwwwfffff	chrX:132833822-132834060(-)$1	238	44	68	22.2705
gggggggtttttttttttgggggg	chr6:26056034-26056338(-)$1	304	170	194	22.7803
eeeeevvvvvvvvvvvvveeeee4	chr17:29095891-29096183(+)$1	292	10	34	23.5771
$ccc[auuuuuuuuuuuua]ccc6	chr2:136528118-136528404(+)$1	286	145	169	23.4779
d[ddddvvvvvvvvvvvvvdddd2	chr6:7579630-7579996(+)$1	366	71	95	23.4222
c[ccctttttttttttccc]ccc]	chr1:24979319-24979615(+)$1	296	103	127	20.5650
gggggggtttttttttttgggggg	chr17:7139376-7139690(-)$1	314	126	150	22.7803
gggggguuuuuuuuuuuugggggg	chr6:30546177-30546469(+)$1	292	116	140	23.8938
c!!cccuuuuuuuuuuuuccc>>>	chr5:140083993-140084257(+)$1	264	182	206	23.6893
#eeeeeuuuuuuuuuuuueeeee3	chr7:107564697-107564939(-)$1	242	84	108	23.4392
++dddduuuuuuuuuuuudddd>>	chr15:85085299-85085624(-)$1	325	162	186	21.6140
:ddddwwwwwwwwwwwwwwdddd:	chr2:136528040-136528318(+)$1	278	145	169	20.4740

#otherMatches

#Seq PSSM
aaggagagguaaaagaaAAUUUGG	chr9:131456203-131456422(+)$1	219	110	134	23.1517
AAUUUUAUUUUUAACUACAGAAGU	chr12:95879553-95879793(+)$1	240	53	77	22.2301
CCACGAGAAGAUCAUGGCCGUGGA	chr1:245025819-245026038(-)$1	219	59	83	23.7129
ACAAAGAAAAAUGGAAAAACUUUG	chr13:107196254-107196511(-)$1	257	189	213	24.3711
GAUGUAAUUAUAUUAGCUUUAUAU	chr8:124381985-124382263(-)$1	278	231	255	22.9377
GAGCAGGAAGGAGGAGAGAACCGG	chr17:66508066-66508390(+)$1	324	233	257	21.4015
GCCAACCAAACUUCAAUAGGUUGG	chr2:27656174-27656453(+)$1	279	254	278	21.2251
UGACGAGGGUAAGAGGAAUUGUUA	chr3:50099303-50099570(+)$1	267	230	254	22.9454
AAGAAUCAAUUAUAAACAGGUAUU	chr5:148880458-148880792(-)$1	334	196	220	22.5167
AGAUUCAGAUGAAGAAAAUGAUUU	chr2:190339838-190340189(+)$1	351	151	175	22.9794
CUGGAAAUGUAAAGAAUUCUUUCA	chr2:203757207-203757526(-)$1	319	20	44	24.3711
UGUUUCCUUUUUAGCUCCGGACCA	chr20:34317289-34317550(-)$1	261	87	111	23.6093
UAGGUCACCCAGCAGAAGACCUGG	chr6:4032681-4033029(+)$1	348	86	110	21.1573
UAGUUUGCCCAAAAGAUGAAGACU	chr1:245019660-245019977(-)$1	317	120	144	24.1802
ugggagugagaccgggaucugcca	chr8:123831161-123831492(+)$1	331	287	311	22.8660
CAGCUGAAGUUUGAAGUAAGUUUC	chr16:50655448-50655720(+)$1	272	156	180	23.5614
GGAGCAAAUGGUUCUUGGUGCUCC	chr2:102475356-102475568(+)$1	212	13	37	23.8938
AGGAGGAAGAUGAGGAGAGCUCCU	chr20:3765563-3765887(-)$1	324	135	159	22.2705
GCCCAGCAAAAGGUAAUCUUGGGU	chr17:38555191-38555443(-)$1	252	140	164	22.9454
AGGGAAAGACGGUCAUGGUCCCAG	chr19:8528388-8528675(+)$1	287	245	269	21.7364
CCAGCGUGGACACCAAGGAGGCUG	chr7:134632261-134632621(+)$1	360	14	38	23.4471
UGCUUUAAAUUUGACAAGUAGGUA	chr1:185275539-185275882(-)$1	343	55	79	23.1131
GUACUCUAAUCCAAUCAAAGAAGA	chr3:142761886-142762160(+)$1	274	135	159	23.2460
CAGUGGUAAUUUAAGAAUUCGGUG	chr5:37396491-37396783(+)$1	292	191	215	24.2619
CAGGUAAAAAUCAAGGUGACCCCA	chr2:232327818-232328124(-)$1	306	98	122	23.1473
GGGAAGAAAUUGAAAUAGUCUUAG	chr1:23637595-23637897(-)$1	302	116	140	22.0289
CUUGGCAAAGUGAAAGAAGCAGUG	chr7:134215376-134215666(+)$1	290	24	48	22.8248
CCAUUGCCCACGUGUCCCGCUGGA	chr16:3785930-3786209(-)$1	279	194	218	22.3616
CUCGCUCACCAACCCCAaagcaga	chr16:2808371-2808651(+)$1	280	122	146	23.3992
AAGCUGAAAGAAAAAGAAGAGUUA	chr2:99977990-99978254(+)$1	264	127	151	20.4740
UUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267476-65267748(+)$1	272	206	230	24.1572
AACUGGUAACUCACAAUAACCUCA	chr16:57200902-57201201(-)$1	299	49	73	20.6691
AUCUCUGUGGUUCUAAAAAGAGAU	chr7:139094218-139094506(+)$1	288	215	239	22.9454
GAAAUGGCCAAACAGAAAGCAGCU	chr2:232325130-232325372(-)$1	242	132	156	22.7151
CCCGUGAAGAAGAAGGCCCGCAAG	chr6:26156530-26156836(+)$1	306	142	166	23.8480
ACUGGAGGAAAAACAGAGUCCAGA	chr12:58112685-58113014(+)$1	329	188	212	23.2742
CUGUCACUCCAGGCAAAAAGGCAG	chr2:232326575-232326825(-)$1	250	206	230	22.2705
CAAUUUUUUAUUCAUUUUAAAUAG	chr2:170668075-170668365(+)$1	290	201	225	22.9420
CUUUUGUUAGGAAAAAAUUGAAAG	chr9:127998781-127999070(-)$1	289	247	271	22.9454
guggcuaagagcugauaauggccu	chr2:21244158-21244429(-)$1	271	184	208	22.3576
GUAGCCAAAUCCCAUUUCAGGCUG	chr3:40503027-40503252(+)$1	225	180	204	23.4442
auuucuaacaaguucucaggagau	chr14:35264769-35265075(-)$1	306	21	45	21.5485
AACAGGCAGAAGAGAAGCACCUGA	chr3:121412778-121413100(-)$1	322	128	152	20.6655
guauagaagauagaaaaauauaaa	chr11:65267244-65267466(+)$1	222	161	185	23.6147
UGAUUAUAAACCUAAGAAAAUUAA	chr20:39709724-39709986(+)$1	262	83	107	23.5278
ACACGGGGAAGAAAAUGCUGAGGC	chr8:103300282-103300596(-)$1	314	158	182	21.2908
UGCUUUCCUAGAACUGAAGAAAGA	chr1:24975309-24975621(+)$1	312	168	192	22.3127
GCUGCUGUGAAAAACGAGAAGGAG	chr17:78263492-78263744(+)$1	252	79	103	23.3324
GAUGGCAGUUUAACUUGAGUGAUU	chr20:34319759-34319992(-)$1	233	182	206	21.9043
auuuuuaaagugcaaaaagaaagu	chr7:138205424-138205814(+)$1	390	357	381	23.8938
CGCAUGUGCAGAAGGGAAACGUGA	chr10:102289471-102289723(-)$1	252	80	104	22.3581
UCCUGUGCCCGUUUUCUUUUAGGA	chr14:73566274-73566563(+)$1	289	78	102	23.1668
GAAAUGGCCAAACAGAAAGCAGCU	chr2:232325097-232325330(-)$1	233	90	114	22.7151
GAUCUGCUUAUUAUCCUGAAGAUC	chrX:132833822-132834060(-)$1	238	44	68	22.2705
GGCCACUGUAACCAAGAAAGUGGC	chr6:26056034-26056338(-)$1	304	170	194	22.7803
UUUGAAUCCUGACCUCAAUCAAAC	chr17:29095891-29096183(+)$1	292	10	34	23.5771
GAUAGGGCAGCUCGAGAACGUAUA	chr2:136528118-136528404(+)$1	286	145	169	23.4779
UAAGCAAAAUCUAGACAAGUGCUA	chr6:7579630-7579996(+)$1	366	71	95	23.4222
CGGCCAAGCCCAAGAAGGCGGCCA	chr1:24979319-24979615(+)$1	296	103	127	20.5650
CGGGGGGAUAGACUCCCACCUCCU	chr17:7139376-7139690(-)$1	314	126	150	22.7803
GGAGGAGGAAGAAAAACAUCCUCC	chr6:30546177-30546469(+)$1	292	116	140	23.8938
CCCCUCUCCCCCAGAUUUGAGUUU	chr5:140083993-140084257(+)$1	264	182	206	23.6893
UGUCUAAAUGUGGAACUAUAGACU	chr7:107564697-107564939(-)$1	242	84	108	23.4392
GAAGUUGGAGGAUGAAGGAACUGA	chr15:85085299-85085624(-)$1	325	162	186	21.6140
AUGUUGGAUUAUAAAAGAAAACAA	chr2:136528040-136528318(+)$1	278	145	169	20.4740

#DB
..(((..............)))..	chr9:131456203-131456422(+)$1	1	110	134	23.1517
((((((.............)))))	chr12:95879553-95879793(+)$1	1	53	77	22.2301
(((((.............))))).	chr1:245025819-245026038(-)$1	1	59	83	23.7129
((((((.............)))))	chr13:107196254-107196511(-)$1	1	189	213	24.3711
(((((((...........))))))	chr8:124381985-124382263(-)$1	1	231	255	22.9377
.(((.((.............))..	chr17:66508066-66508390(+)$1	1	233	257	21.4015
))(((((...........))))).	chr2:27656174-27656453(+)$1	1	254	278	21.2251
((((((............))))))	chr3:50099303-50099570(+)$1	1	230	254	22.9454
(((.(((...........))).))	chr5:148880458-148880792(-)$1	1	196	220	22.5167
((..(((...........))))))	chr2:190339838-190340189(+)$1	1	151	175	22.9794
((((((.............)))))	chr2:203757207-203757526(-)$1	1	20	44	24.3711
.((((.............))))))	chr20:34317289-34317550(-)$1	1	87	111	23.6093
((((((...........)))))).	chr6:4032681-4033029(+)$1	1	86	110	21.1573
((((((.............)))))	chr1:245019660-245019977(-)$1	1	120	144	24.1802
(((.((............)).)))	chr8:123831161-123831492(+)$1	1	287	311	22.8660
.((((.............)))).)	chr16:50655448-50655720(+)$1	1	156	180	23.5614
((((((............))))))	chr2:102475356-102475568(+)$1	1	13	37	23.8938
(((((..............)))))	chr20:3765563-3765887(-)$1	1	135	159	22.2705
((((((............))))))	chr17:38555191-38555443(-)$1	1	140	164	22.9454
.((((.............))))))	chr19:8528388-8528675(+)$1	1	245	269	21.7364
(((((.(...........).))).	chr7:134632261-134632621(+)$1	1	14	38	23.4471
(((((..............)))))	chr1:185275539-185275882(-)$1	1	55	79	23.1131
.(..(((...........)))).)	chr3:142761886-142762160(+)$1	1	135	159	23.2460
((.(((............))).))	chr5:37396491-37396783(+)$1	1	191	215	24.2619
).(((.............)))(((	chr2:232327818-232328124(-)$1	1	98	122	23.1473
(..((((...........))))..	chr1:23637595-23637897(-)$1	1	116	140	22.0289
(...((............))...)	chr7:134215376-134215666(+)$1	1	24	48	22.8248
(((..((...........))))))	chr16:3785930-3786209(-)$1	1	194	218	22.3616
((.(((............))))))	chr16:2808371-2808651(+)$1	1	122	146	23.3992
.((((..............)))).	chr2:99977990-99978254(+)$1	1	127	151	20.4740
((.(((............))).))	chr11:65267476-65267748(+)$1	1	206	230	24.1572
....(((...........)))...	chr16:57200902-57201201(-)$1	1	49	73	20.6691
((((((............))))))	chr7:139094218-139094506(+)$1	1	215	239	22.9454
((..((.............))..)	chr2:232325130-232325372(-)$1	1	132	156	22.7151
...(((............))).))	chr6:26156530-26156836(+)$1	1	142	166	23.8480
.(((((............))))).	chr12:58112685-58113014(+)$1	1	188	212	23.2742
(((((..............)))))	chr2:232326575-232326825(-)$1	1	206	230	22.2705
(.((((............)))).)	chr2:170668075-170668365(+)$1	1	201	225	22.9420
((((((............))))))	chr9:127998781-127999070(-)$1	1	247	271	22.9454
(((((((...........))))).	chr2:21244158-21244429(-)$1	1	184	208	22.3576
((((((.............)))))	chr3:40503027-40503252(+)$1	1	180	204	23.4442
((((((............))))))	chr14:35264769-35265075(-)$1	1	21	45	21.5485
..((((.............)))).	chr3:121412778-121413100(-)$1	1	128	152	20.6655
.((((.............))))..	chr11:65267244-65267466(+)$1	1	161	185	23.6147
(((((.............))))).	chr20:39709724-39709986(+)$1	1	83	107	23.5278
.(.(((...........))).)..	chr8:103300282-103300596(-)$1	1	158	182	21.2908
(.(((((...........))))).	chr1:24975309-24975621(+)$1	1	168	192	22.3127
(((.((.............)).))	chr17:78263492-78263744(+)$1	1	79	103	23.3324
(((.((............)).)))	chr20:34319759-34319992(-)$1	1	182	206	21.9043
((((((............))))))	chr7:138205424-138205814(+)$1	1	357	381	23.8938
..(((((...........))))).	chr10:102289471-102289723(-)$1	1	80	104	22.3581
(((((..............)))))	chr14:73566274-73566563(+)$1	1	78	102	23.1668
((..((.............))..)	chr2:232325097-232325330(-)$1	1	90	114	22.7151
(((((..............)))))	chrX:132833822-132834060(-)$1	1	44	68	22.2705
(((((((...........))))))	chr6:26056034-26056338(-)$1	1	170	194	22.7803
(((((.............))))).	chr17:29095891-29096183(+)$1	1	10	34	23.5771
.(((.(............).))).	chr2:136528118-136528404(+)$1	1	145	169	23.4779
(.((((.............)))).	chr6:7579630-7579996(+)$1	1	71	95	23.4222
(.(((...........))).))).	chr1:24979319-24979615(+)$1	1	103	127	20.5650
(((((((...........))))))	chr17:7139376-7139690(-)$1	1	126	150	22.7803
((((((............))))))	chr6:30546177-30546469(+)$1	1	116	140	23.8938
(..(((............)))...	chr5:140083993-140084257(+)$1	1	182	206	23.6893
.(((((............))))).	chr7:107564697-107564939(-)$1	1	84	108	23.4392
..((((............))))..	chr15:85085299-85085624(-)$1	1	162	186	21.6140
.((((..............)))).	chr2:136528040-136528318(+)$1	1	145	169	20.4740

#PSSM
g : 0.15	f : 0.15	d : 0.09	c : 0.09	e : 0.07	: : 0.06	h : 0.04	= : 0.04	" : 0.04	[ : 0.04	$ : 0.04	i : 0.03	# : 0.03	! : 0.01	b : 0.01	a : 0.01	' : 0.01	+ : 0.01	
g : 0.15	f : 0.15	d : 0.15	e : 0.09	c : 0.09	[ : 0.06	! : 0.04	h : 0.04	" : 0.04	= : 0.03	i : 0.03	a : 0.03	: : 0.03	# : 0.01	+ : 0.01	
d : 0.16	e : 0.13	g : 0.13	f : 0.13	c : 0.12	! : 0.09	[ : 0.06	h : 0.04	= : 0.03	" : 0.03	i : 0.01	# : 0.01	
c : 0.18	d : 0.16	e : 0.13	f : 0.13	g : 0.12	! : 0.07	[ : 0.06	h : 0.03	= : 0.03	i : 0.01	" : 0.01	# : 0.01	
c : 0.21	d : 0.16	e : 0.13	f : 0.13	g : 0.12	b : 0.09	h : 0.03	= : 0.03	[ : 0.03	i : 0.01	! : 0.01	
c : 0.15	w : 0.12	v : 0.12	b : 0.12	g : 0.10	e : 0.09	f : 0.09	d : 0.07	h : 0.03	= : 0.01	i : 0.01	[ : 0.01	a : 0.01	t : 0.01	
u : 0.32	v : 0.27	w : 0.12	e : 0.06	c : 0.06	t : 0.04	b : 0.03	g : 0.03	= : 0.01	a : 0.01	d : 0.01	
u : 0.32	v : 0.29	t : 0.26	w : 0.12	
u : 0.32	v : 0.29	t : 0.26	w : 0.12	
u : 0.32	v : 0.29	t : 0.26	w : 0.12	
u : 0.32	v : 0.29	t : 0.26	w : 0.12	
u : 0.32	v : 0.29	t : 0.26	w : 0.12	
u : 0.32	v : 0.29	t : 0.26	w : 0.12	
u : 0.32	v : 0.29	t : 0.26	w : 0.12	
u : 0.32	v : 0.29	t : 0.26	w : 0.12	
u : 0.32	v : 0.29	t : 0.26	w : 0.12	
u : 0.32	v : 0.29	t : 0.24	w : 0.12	c : 0.01	
u : 0.32	v : 0.29	t : 0.21	w : 0.12	c : 0.03	f : 0.01	
c : 0.18	v : 0.16	e : 0.13	w : 0.12	d : 0.10	f : 0.07	g : 0.07	b : 0.06	a : 0.03	= : 0.01	h : 0.01	
c : 0.18	d : 0.16	e : 0.13	f : 0.13	g : 0.12	b : 0.10	] : 0.04	h : 0.03	= : 0.03	v : 0.01	i : 0.01	
c : 0.21	d : 0.16	e : 0.13	g : 0.13	f : 0.13	b : 0.06	] : 0.04	h : 0.03	= : 0.03	i : 0.01	3 : 0.01	
d : 0.18	f : 0.15	e : 0.13	g : 0.13	c : 0.09	] : 0.07	h : 0.04	= : 0.03	a : 0.03	2 : 0.03	b : 0.01	i : 0.01	3 : 0.01	5 : 0.01	> : 0.01	
g : 0.16	e : 0.15	f : 0.15	d : 0.09	c : 0.09	2 : 0.07	h : 0.04	] : 0.04	= : 0.03	i : 0.03	3 : 0.03	> : 0.03	F : 0.01	5 : 0.01	6 : 0.01	
g : 0.16	f : 0.15	2 : 0.09	3 : 0.07	: : 0.06	d : 0.06	h : 0.04	c : 0.04	] : 0.04	= : 0.03	i : 0.03	a : 0.03	e : 0.03	6 : 0.03	> : 0.03	7 : 0.01	F : 0.01	5 : 0.01	4 : 0.01	

#score	1480.2532135098525
#seq	65
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_transcript_m3_run2.txt

#BEAR
eeee!!aqqqqqqqqa22eeee	chr16:3072090-3072398(+)$1	308	64	86	14.7719
gggggggqqqqqqqqggggggg	chr17:36872519-36872751(+)$1	232	21	43	15.7804
iiiiiiiqqqqqqqqiiiiiii	chr20:60709733-60709995(+)$1	262	186	208	15.7523
eeeeebbqqqqqqqqbb]eeee	chr11:69466559-69466828(+)$1	269	125	147	14.9228
=======qqqqqqqq=======	chr9:34369498-34369778(-)$1	280	18	40	16.1947
ffff[bbqqqqqqqqbb333ff	chr20:30193856-30194113(+)$1	257	230	252	15.4257
b[eeeeeqqqqqqqqeeeee]b	chr17:74077956-74078245(-)$1	289	239	261	14.4710
gggggggqqqqqqqqggggggg	chr17:56567576-56567864(-)$1	288	57	79	15.7804
$$$$$bbqqqqqqqqbb333dd	chr11:62283518-62283802(-)$1	284	123	145	14.2659
iiiiiiiqqqqqqqqiiiiiii	chr17:31268373-31268646(+)$1	273	7	29	15.7523
cccbb[aqqqqqqqqa]bb]cc	chr1:59247394-59247659(-)$1	265	219	241	14.0310
gggggggqqqqqqqqggggggg	chr2:46612998-46613314(+)$1	316	79	101	15.7804
g"""cccqqqqqqqqcccgggg	chr2:242612920-242613200(+)$1	280	137	159	15.5039
f]bbcccqqqqqqqqccceeee	chr16:314975-315248(+)$1	273	118	140	14.1957
gggggggqqqqqqqqggggggg	chr7:99054191-99054446(+)$1	255	140	162	15.7804
dddddddqqqqqqqqdddd]dd	chr21:48079404-48079724(+)$1	320	108	130	13.6683
eeeee[aqqqqqqqqa]eeeee	chr1:2520930-2521227(+)$1	297	85	107	14.9540
bb"""bbqqqqqqqqbb333bb	chr17:7484986-7485269(+)$1	283	206	228	14.5959
ffeeeeeqqqqqqqqeeeee]f	chr2:128948402-128948675(+)$1	273	243	265	14.7149
ddeeeeeqqqqqqqqeeeee]d	chr17:40556262-40556520(-)$1	258	37	59	14.4844
""eeeeeqqqqqqqqeeeee44	chr16:74482063-74482302(-)$1	239	128	150	14.6729
ddd!!bbqqqqqqqqbb22ddd	chr3:127789124-127789361(+)$1	237	59	81	14.5802
eeee[bbqqqqqqqqbbeeeee	chr2:233741527-233741823(+)$1	296	223	245	14.9759
ff[ddddqqqqqqqqdddd22f	chr2:219210189-219210455(+)$1	266	171	193	13.9501
fffddddqqqqqqqqdddd]ff	chr19:11033540-11033802(-)$1	262	201	223	14.0451
ffeeeeeqqqqqqqqeeeee]f	chr1:24933397-24933607(+)$1	210	135	157	14.7149
!!eeeeeqqqqqqqqeeeee55	chr20:45363146-45363423(+)$1	277	50	72	13.2136
dddd[bbqqqqqqqqbb]dddd	chr17:46137103-46137340(+)$1	237	165	187	14.3422
"ffffffqqqqqqqqffffff4	chr5:180217581-180217918(-)$1	337	237	259	14.2315
ee[ddddqqqqqqqqdddd333	chr11:46693926-46694172(+)$1	246	35	57	14.3543
c[eeeeeqqqqqqqqeeeeecc	chr1:19655530-19655818(+)$1	288	157	179	14.8431
fff!!bbqqqqqqqqbb22fff	chr5:175307319-175307586(+)$1	267	30	52	15.0296
c[cccbbqqqqqqqqbb333cc	chr3:186338865-186339119(+)$1	254	170	192	15.5637
a!!ddddqqqqqqqqdddd]a]	chr7:6501586-6501872(-)$1	286	78	100	14.3255
iiii[bbqqqqqqqqbb]iiii	chr12:71979164-71979447(+)$1	283	252	274	15.7440
bb!!cccqqqqqqqqccc]bb:	chr18:72187257-72187532(+)$1	275	173	195	13.3717
gggggggqqqqqqqqggggggg	chr2:219460189-219460438(+)$1	249	33	55	15.7804
f!!bb[aqqqqqqqqa]bb22f	chr17:76989077-76989358(-)$1	281	90	112	13.9581
""bb[bbqqqqqqqqbb]bb]d	chr1:183112697-183112995(+)$1	298	140	162	14.0192
gggggggqqqqqqqqggggggg	chr19:14588551-14588845(-)$1	294	90	112	15.7804
ggg[cccqqqqqqqqccc22gg	chr19:10427382-10427644(-)$1	262	72	94	15.6885
iiii[bbqqqqqqqqbb333ii	chr12:46754082-46754308(-)$1	226	77	99	16.0586
!!eeeeeqqqqqqqqeeeee22	chr2:241517471-241517733(+)$1	262	92	114	14.5244
ccc[cccqqqqqqqqccc22cc	chr11:64895014-64895242(-)$1	228	88	110	15.2681
eee[a[aqqqqqqqqaaeeeee	chr21:46271020-46271267(-)$1	247	149	171	15.1584
ddd!!bbqqqqqqqqbb22ddd	chrX:153759717-153760009(-)$1	292	47	69	14.5802
ddd[cccqqqqqqqqccc]ddd	chr12:57850741-57851021(+)$1	280	198	220	14.6937
iiiiiiiqqqqqqqqiiiiiii	chr2:85549517-85549790(-)$1	273	41	63	15.7523
!ffffffqqqqqqqqffffff]	chr1:109854083-109854375(-)$1	292	164	186	14.3728
bdddd[aqqqqqqqqa]dddd]	chr17:80201769-80202074(-)$1	305	151	173	14.0635
hffffffqqqqqqqqffffff3	chr2:129025283-129025519(-)$1	236	186	208	14.1771
gggggggqqqqqqqqggggggg	chr12:125626902-125627167(+)$1	265	97	119	15.7804
=======qqqqqqqq=======	chr3:38454702-38454982(+)$1	280	14	36	16.1947
b[a[cccqqqqqqqqccc]abb	chr21:46933228-46933473(+)$1	245	31	53	14.6188
cc!!cccqqqqqqqqccc22cc	chr20:32245271-32245536(-)$1	265	76	98	15.4004
[ffffffqqqqqqqqffffffd	chr7:44423442-44423752(-)$1	310	15	37	14.2569
dd!!a[aqqqqqqqqa]a22dd	chr14:95090168-95090466(+)$1	298	11	33	14.9759
gggggggqqqqqqqqggggggg	chr14:53242749-53242993(-)$1	244	200	222	15.7804
gggggggqqqqqqqqggggggg	chr3:129274681-129274958(-)$1	277	18	40	15.7804
fff[abbqqqqqqqqbb]a]ff	chr11:64894412-64894684(+)$1	272	237	259	15.1807
gggggggqqqqqqqqggggggg	chr17:41008676-41008928(+)$1	252	57	79	15.7804

#otherMatches

#Seq PSSM
GGGCAGACUUGACACUAGGCCC	chr16:3072090-3072398(+)$1	308	64	86	14.7719
cuccCGCCAGUACACGCGGGAG	chr17:36872519-36872751(+)$1	232	21	43	15.7804
CCAGGUUGGGGUUGGAGCCUGG	chr20:60709733-60709995(+)$1	262	186	208	15.7523
CUUCACCUUAUUCAUGGCUGAA	chr11:69466559-69466828(+)$1	269	125	147	14.9228
GUCUGUGCUUCUGAACACAGGC	chr9:34369498-34369778(-)$1	280	18	40	16.1947
UCUGCACACCUACUAGUCACCA	chr20:30193856-30194113(+)$1	257	230	252	15.4257
GGUGCUGAGGAAGAGCAGCAGC	chr17:74077956-74078245(-)$1	289	239	261	14.4710
AAAAAAuuuuauuuuguuuuuu	chr17:56567576-56567864(-)$1	288	57	79	15.7804
UCUUUAGUGUUGUUUCUUUCAC	chr11:62283518-62283802(-)$1	284	123	145	14.2659
ucagaauguguggcaauucuga	chr17:31268373-31268646(+)$1	273	7	29	15.7523
AUGGACCUAACAUUCGAUCUCA	chr1:59247394-59247659(-)$1	265	219	241	14.0310
CUCCAAGCUCACGACCUUGGAG	chr2:46612998-46613314(+)$1	316	79	101	15.7804
AGGCUGGUGCGAUCUCCAUUCC	chr2:242612920-242613200(+)$1	280	137	159	15.5039
CUGGGUCUCUGCACUGACUCCC	chr16:314975-315248(+)$1	273	118	140	14.1957
CAGUCGACAUCAUGUUUGGCUG	chr7:99054191-99054446(+)$1	255	140	162	15.7804
GCUGUUUUCCCUACCAGACAAG	chr21:48079404-48079724(+)$1	320	108	130	13.6683
GCAGUUCCUGACCACGCACUGC	chr1:2520930-2521227(+)$1	297	85	107	14.9540
ucaucgcgccacuaagccaaga	chr17:7484986-7485269(+)$1	283	206	228	14.5959
AGGCUGCAGGGCACAGCAGCAC	chr2:128948402-128948675(+)$1	273	243	265	14.7149
GAAGGGAAUGGUCAAUCCCUGU	chr17:40556262-40556520(-)$1	258	37	59	14.4844
cuGAGGUUCUUGCCUGCCUUCC	chr16:74482063-74482302(-)$1	239	128	150	14.6729
AGUCUGCCUGUUUCUGCUAGCU	chr3:127789124-127789361(+)$1	237	59	81	14.5802
GGACGUCUUGACUCUGAGUCCU	chr2:233741527-233741823(+)$1	296	223	245	14.9759
GGGUCCUGAUUGCCAAGGAAAC	chr2:219210189-219210455(+)$1	266	171	193	13.9501
CUCCCCUGGAACAGGAGGGAGA	chr19:11033540-11033802(-)$1	262	201	223	14.0451
uggagugcaguggcacgcucac	chr1:24933397-24933607(+)$1	210	135	157	14.7149
UUGACUCUUUUAUCUGAGUUUU	chr20:45363146-45363423(+)$1	277	50	72	13.2136
AGUUGCUGGAGGUAGAGGAGCU	chr17:46137103-46137340(+)$1	237	165	187	14.3422
AUGUCCUCACAGGCCAGGACGC	chr5:180217581-180217918(-)$1	337	237	259	14.2315
CCCCUCAUCCUGCUCUGAGCCA	chr11:46693926-46694172(+)$1	246	35	57	14.3543
uugcggugaaccgagaucgugc	chr1:19655530-19655818(+)$1	288	157	179	14.8431
UCCCUGCUCCCCACUGCCAGGA	chr5:175307319-175307586(+)$1	267	30	52	15.0296
GCUAAGCUUAUAUGUGCCUGUU	chr3:186338865-186339119(+)$1	254	170	192	15.5637
CCUUACAUUCUUUUUUGUAUGU	chr7:6501586-6501872(-)$1	286	78	100	14.3255
GCAUCUUAAUGAUCAAAUGUGC	chr12:71979164-71979447(+)$1	283	252	274	15.7440
GAGAACAGACACAAGUGUAUCC	chr18:72187257-72187532(+)$1	275	173	195	13.3717
UCAGAGAUUUCCUCUUCUCUGG	chr2:219460189-219460438(+)$1	249	33	55	15.7804
acccugagaacgcagugagcau	chr17:76989077-76989358(-)$1	281	90	112	13.9581
GCAGAGAACAGUUAAUCCCUAA	chr1:183112697-183112995(+)$1	298	140	162	14.0192
UGUGGAGCCUGUUACCUCCGCA	chr19:14588551-14588845(-)$1	294	90	112	15.7804
GCAUGGCUGUCUCCUGCCCCUG	chr19:10427382-10427644(-)$1	262	72	94	15.6885
UUGUACCAUGAAUUAGGAGCAU	chr12:46754082-46754308(-)$1	226	77	99	16.0586
UCCUGUCUCAACACUGACAGCU	chr2:241517471-241517733(+)$1	262	92	114	14.5244
CCCAGCCGCACUCCAGGCAAGG	chr11:64895014-64895242(-)$1	228	88	110	15.2681
UUCACACGCAACACAGGGAAGU	chr21:46271020-46271267(-)$1	247	149	171	15.1584
UCCAGCCCAACAGAAGGAAGGA	chrX:153759717-153760009(-)$1	292	47	69	14.5802
GGCAGAGAAAAAUUACUUAGCC	chr12:57850741-57851021(+)$1	280	198	220	14.6937
UGUUUCUAAAUCAAAAGAAAUG	chr2:85549517-85549790(-)$1	273	41	63	15.7523
UGAUGGGUCUCCCUCCCCAUCC	chr1:109854083-109854375(-)$1	292	164	186	14.3728
GCCCUCGGAGAGCAGUUAGGGA	chr17:80201769-80202074(-)$1	305	151	173	14.0635
UUAGCUCCUCUGUCCGGGCUAC	chr2:129025283-129025519(-)$1	236	186	208	14.1771
GCCGCAGGUGUGGCACUGUGGU	chr12:125626902-125627167(+)$1	265	97	119	15.7804
AGGAAAGCAUCUCUCUUUUCCU	chr3:38454702-38454982(+)$1	280	14	36	16.1947
CACUGCCCAUGGACAGGCUGGC	chr21:46933228-46933473(+)$1	245	31	53	14.6188
GAUUUAUUUAUCCCUGUAUUUU	chr20:32245271-32245536(-)$1	265	76	98	15.4004
UGGUGUGAGAUGCCCUACACCU	chr7:44423442-44423752(-)$1	310	15	37	14.2569
GUAAGGAACUUGGAAUGCAAGC	chr14:95090168-95090466(+)$1	298	11	33	14.9759
cucagccucccauguggcuggg	chr14:53242749-53242993(-)$1	244	200	222	15.7804
UCUCUGGGAUGGAGGCCAGAGA	chr3:129274681-129274958(-)$1	277	18	40	15.7804
GAAACCCUCACUCCUGGAGAUU	chr11:64894412-64894684(+)$1	272	237	259	15.1807
CCCUGUGAUGCCUGACACAGGG	chr17:41008676-41008928(+)$1	252	57	79	15.7804

#DB
((((..(........)..))))	chr16:3072090-3072398(+)$1	1	64	86	14.7719
(((((((........)))))))	chr17:36872519-36872751(+)$1	1	21	43	15.7804
(((((((........)))))))	chr20:60709733-60709995(+)$1	1	186	208	15.7523
(((((((........)).))))	chr11:69466559-69466828(+)$1	1	125	147	14.9228
(((((((........)))))))	chr9:34369498-34369778(-)$1	1	18	40	16.1947
((((.((........))...))	chr20:30193856-30194113(+)$1	1	230	252	15.4257
(.(((((........))))).)	chr17:74077956-74078245(-)$1	1	239	261	14.4710
(((((((........)))))))	chr17:56567576-56567864(-)$1	1	57	79	15.7804
.....((........))...))	chr11:62283518-62283802(-)$1	1	123	145	14.2659
(((((((........)))))))	chr17:31268373-31268646(+)$1	1	7	29	15.7523
(((((.(........).)).))	chr1:59247394-59247659(-)$1	1	219	241	14.0310
(((((((........)))))))	chr2:46612998-46613314(+)$1	1	79	101	15.7804
(...(((........)))))))	chr2:242612920-242613200(+)$1	1	137	159	15.5039
).))(((........)))((((	chr16:314975-315248(+)$1	1	118	140	14.1957
(((((((........)))))))	chr7:99054191-99054446(+)$1	1	140	162	15.7804
(((((((........)))).))	chr21:48079404-48079724(+)$1	1	108	130	13.6683
(((((.(........).)))))	chr1:2520930-2521227(+)$1	1	85	107	14.9540
((...((........))...))	chr17:7484986-7485269(+)$1	1	206	228	14.5959
(((((((........))))).)	chr2:128948402-128948675(+)$1	1	243	265	14.7149
(((((((........))))).)	chr17:40556262-40556520(-)$1	1	37	59	14.4844
..(((((........)))))..	chr16:74482063-74482302(-)$1	1	128	150	14.6729
(((..((........))..)))	chr3:127789124-127789361(+)$1	1	59	81	14.5802
((((.((........)))))))	chr2:233741527-233741823(+)$1	1	223	245	14.9759
((.((((........))))..)	chr2:219210189-219210455(+)$1	1	171	193	13.9501
(((((((........)))).))	chr19:11033540-11033802(-)$1	1	201	223	14.0451
(((((((........))))).)	chr1:24933397-24933607(+)$1	1	135	157	14.7149
..(((((........)))))..	chr20:45363146-45363423(+)$1	1	50	72	13.2136
((((.((........)).))))	chr17:46137103-46137340(+)$1	1	165	187	14.3422
.((((((........)))))).	chr5:180217581-180217918(-)$1	1	237	259	14.2315
((.((((........))))...	chr11:46693926-46694172(+)$1	1	35	57	14.3543
(.(((((........)))))))	chr1:19655530-19655818(+)$1	1	157	179	14.8431
(((..((........))..)))	chr5:175307319-175307586(+)$1	1	30	52	15.0296
(.(((((........))...))	chr3:186338865-186339119(+)$1	1	170	192	15.5637
(..((((........)))).).	chr7:6501586-6501872(-)$1	1	78	100	14.3255
((((.((........)).))))	chr12:71979164-71979447(+)$1	1	252	274	15.7440
((..(((........))).)).	chr18:72187257-72187532(+)$1	1	173	195	13.3717
(((((((........)))))))	chr2:219460189-219460438(+)$1	1	33	55	15.7804
(..((.(........).))..)	chr17:76989077-76989358(-)$1	1	90	112	13.9581
..((.((........)).)).)	chr1:183112697-183112995(+)$1	1	140	162	14.0192
(((((((........)))))))	chr19:14588551-14588845(-)$1	1	90	112	15.7804
(((.(((........)))..))	chr19:10427382-10427644(-)$1	1	72	94	15.6885
((((.((........))...))	chr12:46754082-46754308(-)$1	1	77	99	16.0586
..(((((........)))))..	chr2:241517471-241517733(+)$1	1	92	114	14.5244
(((.(((........)))..))	chr11:64895014-64895242(-)$1	1	88	110	15.2681
(((.(.(........)))))))	chr21:46271020-46271267(-)$1	1	149	171	15.1584
(((..((........))..)))	chrX:153759717-153760009(-)$1	1	47	69	14.5802
(((.(((........))).)))	chr12:57850741-57851021(+)$1	1	198	220	14.6937
(((((((........)))))))	chr2:85549517-85549790(-)$1	1	41	63	15.7523
.((((((........)))))).	chr1:109854083-109854375(-)$1	1	164	186	14.3728
(((((.(........).)))).	chr17:80201769-80202074(-)$1	1	151	173	14.0635
(((((((........)))))).	chr2:129025283-129025519(-)$1	1	186	208	14.1771
(((((((........)))))))	chr12:125626902-125627167(+)$1	1	97	119	15.7804
(((((((........)))))))	chr3:38454702-38454982(+)$1	1	14	36	16.1947
(.(.(((........))).)))	chr21:46933228-46933473(+)$1	1	31	53	14.6188
((..(((........)))..))	chr20:32245271-32245536(-)$1	1	76	98	15.4004
.((((((........)))))))	chr7:44423442-44423752(-)$1	1	15	37	14.2569
((..(.(........).)..))	chr14:95090168-95090466(+)$1	1	11	33	14.9759
(((((((........)))))))	chr14:53242749-53242993(-)$1	1	200	222	15.7804
(((((((........)))))))	chr3:129274681-129274958(-)$1	1	18	40	15.7804
(((.(((........)).).))	chr11:64894412-64894684(+)$1	1	237	259	15.1807
(((((((........)))))))	chr17:41008676-41008928(+)$1	1	57	79	15.7804

#PSSM
g : 0.19	f : 0.14	d : 0.11	e : 0.09	i : 0.08	b : 0.08	c : 0.08	" : 0.04	! : 0.04	= : 0.03	$ : 0.01	a : 0.01	h : 0.01	[ : 0.01	
g : 0.18	f : 0.18	d : 0.13	e : 0.09	i : 0.08	[ : 0.06	! : 0.06	c : 0.04	" : 0.04	= : 0.03	b : 0.03	$ : 0.01	] : 0.01	
e : 0.21	g : 0.18	f : 0.13	d : 0.09	i : 0.08	! : 0.08	c : 0.04	= : 0.03	" : 0.03	b : 0.03	[ : 0.03	$ : 0.01	a : 0.01	
e : 0.19	g : 0.16	d : 0.11	! : 0.09	[ : 0.09	i : 0.08	f : 0.08	b : 0.06	= : 0.03	" : 0.03	$ : 0.01	c : 0.01	
g : 0.16	e : 0.16	c : 0.14	[ : 0.09	d : 0.09	! : 0.06	f : 0.06	i : 0.04	a : 0.04	= : 0.03	b : 0.03	$ : 0.01	" : 0.01	
b : 0.22	g : 0.16	e : 0.13	c : 0.13	[ : 0.09	d : 0.08	f : 0.06	i : 0.04	= : 0.03	! : 0.01	
b : 0.22	g : 0.16	e : 0.13	c : 0.13	a : 0.11	d : 0.08	f : 0.06	i : 0.04	= : 0.03	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
b : 0.22	g : 0.16	e : 0.13	c : 0.13	a : 0.11	d : 0.08	f : 0.06	i : 0.04	= : 0.03	
b : 0.22	g : 0.16	e : 0.13	c : 0.13	] : 0.08	d : 0.08	f : 0.06	i : 0.04	= : 0.03	2 : 0.01	a : 0.01	
e : 0.18	g : 0.16	c : 0.13	d : 0.09	] : 0.08	3 : 0.08	2 : 0.06	f : 0.06	i : 0.04	= : 0.03	b : 0.03	a : 0.01	
e : 0.22	g : 0.18	d : 0.11	2 : 0.11	3 : 0.08	i : 0.06	f : 0.06	b : 0.04	] : 0.04	= : 0.03	a : 0.01	
e : 0.22	g : 0.18	3 : 0.09	2 : 0.09	] : 0.08	d : 0.08	f : 0.08	i : 0.06	= : 0.03	b : 0.03	a : 0.01	
g : 0.19	f : 0.13	d : 0.13	e : 0.09	i : 0.08	] : 0.08	c : 0.08	b : 0.04	2 : 0.04	= : 0.03	4 : 0.01	5 : 0.01	3 : 0.01	a : 0.01	
g : 0.19	d : 0.16	f : 0.13	e : 0.09	i : 0.08	c : 0.08	b : 0.04	] : 0.04	= : 0.03	4 : 0.03	3 : 0.03	5 : 0.01	: : 0.01	2 : 0.01	

#score	910.4126521986417
#seq	61
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_transcript_m2_run1.txt

#BEAR
eeeecccuuuuuuuuuuuuccc]eeeee	chr15:98508821-98509104(+)$1	283	114	142	24.8707
[bb[a[bbtttttttttttbba]bbggg	chr7:87516641-87516927(+)$1	286	140	168	22.9204
=======uuuuuuuuuuuu=========	chr1:46033830-46034105(+)$1	275	55	83	26.0185
ii[cccvvvvvvvvvvvvvccc]iiiii	chr21:46912332-46912603(+)$1	271	87	115	24.4913
!!eeeeewwwwwwwwwwwwwweeeee33	chr10:126096915-126097165(-)$1	250	61	89	23.4993
"a[ddddvvvvvvvvvvvvvdddd]a33	chr19:45570231-45570482(+)$1	251	67	95	23.6050
!!eeeeeuuuuuuuuuuuueeeee22==	chr11:87024317-87024612(+)$1	295	86	114	24.9722
g[bbcccuuuuuuuuuuuuccc]bbggg	chr11:67351239-67351499(+)$1	260	171	199	24.5346
eeeyyyyyyyyyyyyyyyyeeeee333c	chr10:58119500-58119825(-)$1	325	228	256	22.2684
==[dddduuuuuuuuuuuudddd]====	chr1:36757123-36757387(+)$1	264	107	135	24.6029
gggddddyyyyyyyyyyyyyyyydddd]	chr6:135521624-135521883(+)$1	259	36	64	21.9099
[bbyyyyyyyyyyyyyyyybb]ffffff	chr3:15275409-15275696(+)$1	287	81	109	21.4428
cc[ddddyyyyyyyyyyyyyyyydddd]	chr9:131021531-131021788(-)$1	257	37	65	21.7233
!!a[ddddtttttttttttdddda22ii	chr1:55555180-55555425(-)$1	245	160	188	22.9442
ggggggguuuuuuuuuuuuggggggg]e	chr7:127343318-127343576(+)$1	258	119	147	25.3876
iiiiiiivvvvvvvvvvvvviiiiiiii	chr11:65824826-65825128(+)$1	302	52	80	24.6714
ggggggwwwwwwwwwwwwwwgggggggc	chr14:23793680-23793925(+)$1	245	187	215	23.7251
"ffffffuuuuuuuuuuuuffffffccc	chr20:60927974-60928252(-)$1	278	218	246	24.3379
!ffffffuuuuuuuuuuuuffffffggg	chr1:247050377-247050651(-)$1	274	184	212	24.6234
gggggggtttttttttttggggggg]cc	chr19:12825885-12826162(-)$1	277	214	242	23.7523
ggggggguuuuuuuuuuuugggggggee	chr1:52249661-52249988(+)$1	327	22	50	25.2662
======wwwwwwwwwwwwww========	chr4:79766002-79766338(+)$1	336	289	317	24.1850
[ffffffwwwwwwwwwwwwwwffffff]	chr6:28876534-28876810(-)$1	276	170	198	22.6769
eeee!!bbtttttttttttbb22eeeee	chr21:34941271-34941594(+)$1	323	254	282	22.8851
gggggggvvvvvvvvvvvvvgggggggg	chr7:150774387-150774650(-)$1	263	146	174	24.5878
dd!!ccctttttttttttccc22dddd]	chr19:40971291-40971578(-)$1	287	218	246	22.6769
hhhhhhhuuuuuuuuuuuuhhhhhhhhe	chr1:47765335-47765646(-)$1	311	254	282	22.2046
eee"""bbtttttttttttbb22eeeee	chrX:47086551-47086787(+)$1	236	206	234	22.5869
ddd[cccvvvvvvvvvvvvvccc]dddd	chr5:137520090-137520327(+)$1	237	85	113	22.9192
e[fffffftttttttttttffffff]ee	chr7:99754747-99755003(-)$1	256	128	156	23.0932
gggg[bbuuuuuuuuuuuubb]gggggg	chr11:62399800-62400062(-)$1	262	83	111	25.1701
:ccc[bbuuuuuuuuuuuubb]ccc:::	chr16:74949864-74950125(-)$1	261	221	249	20.6438
&&bbcccuuuuuuuuuuuuccc]bb555	chr11:118967644-118967923(-)$1	279	96	124	20.7432
c[eeeeeuuuuuuuuuuuueeeee]ccc	chr1:26880627-26880935(+)$1	308	10	38	24.8101
ggggggguuuuuuuuuuuugggggggcc	chr12:54676567-54676848(+)$1	281	101	129	25.3648
[a[eeeeettttttttttteeeee]a]a	chr19:6417570-6417792(-)$1	222	184	212	23.7715
ffeeeeeuuuuuuuuuuuueeeee333f	chr12:57033252-57033494(-)$1	242	83	111	24.7180
ggggggvvvvvvvvvvvvvgggggggFF	chr15:50872896-50873211(-)$1	315	146	174	23.4222
####cccyyyyyyyyyyyyyyyyccc33	chrX:44922994-44923264(+)$1	270	105	133	22.8732
dddd[bbuuuuuuuuuuuubbdddd:::	chr20:61438742-61439019(+)$1	277	14	42	20.7302
ffffffvvvvvvvvvvvvvffffffbb3	chr9:139837556-139837797(-)$1	241	173	201	22.6885
f"""cccwwwwwwwwwwwwwwccc]fff	chr8:145003633-145003892(-)$1	259	185	213	22.7658
========ttttttttttt=========	chr9:100326366-100326653(+)$1	287	83	111	24.6352
eee[cccuuuuuuuuuuuuccc]eeeee	chr5:179044509-179044746(-)$1	237	26	54	24.9584
!!eeeeeuuuuuuuuuuuueeeee]ggg	chr12:112479622-112479913(-)$1	291	22	50	25.2846
:ffffffuuuuuuuuuuuuffffff===	chr19:3425082-3425406(+)$1	324	202	230	23.5263
eeee!!attttttttttta22eeeee::	chr16:28844595-28844860(+)$1	265	111	139	21.5587
[ccc[bbtttttttttttbb]ccc]ccc	chr8:68255143-68255441(-)$1	298	96	124	23.1325
bb[dddduuuuuuuuuuuudddd]bbcc	chr12:57039438-57039690(-)$1	252	153	181	22.9485
[bbyyyyyyyyyyyyyyyybb]cccggg	chr4:54245343-54245587(+)$1	244	146	174	21.8928
##eeeeeuuuuuuuuuuuueeeee4444	chr3:180326590-180326832(+)$1	242	84	112	24.8073
iiiiiiiyyyyyyyyyyyyyyyyiiiii	chr13:25889537-25889815(+)$1	278	206	234	23.2467
eebb[bbvvvvvvvvvvvvvbb]bb]ee	chr12:54792174-54792435(-)$1	261	204	232	22.4244
!!eeeeewwwwwwwwwwwwwweeeee22	chr16:31121994-31122250(+)$1	256	43	71	22.9570
ffffffvvvvvvvvvvvvvffffff]bb	chr14:50942732-50943035(-)$1	303	15	43	22.6464
gggg[ccctttttttttttcccgggggg	chr19:56175054-56175301(+)$1	247	25	53	24.5945
eeeeeeeuuuuuuuuuuuueeeee22ee	chr11:118959014-118959292(+)$1	278	89	117	24.2065

#otherMatches

#Seq PSSM
CAGUAUGUCCAUUCAAGUUUAUCACUGC	chr15:98508821-98509104(+)$1	283	114	142	24.8707
ACUUUACAUAGUGAAAUUUUGAUAGCAG	chr7:87516641-87516927(+)$1	286	140	168	22.9204
UCUGCUCAAGAGCAUGAGGGAGCAGACG	chr1:46033830-46034105(+)$1	275	55	83	26.0185
UUCCGAUUUUUCCUUUUGCUCGUGGACA	chr21:46912332-46912603(+)$1	271	87	115	24.4913
GAAAUUAAAUAUUAACUUCUAUGAUUGA	chr10:126096915-126097165(-)$1	250	61	89	23.4993
CCUCCCGGGAAGUUAGCAAGCGGGUGUC	chr19:45570231-45570482(+)$1	251	67	95	23.6050
UGUUUUAUGCUUUUAUUUCUAGAAAUAA	chr11:87024317-87024612(+)$1	295	86	114	24.9722
CUCGCCCACCUCGAGACCCGGGACGGGG	chr11:67351239-67351499(+)$1	260	171	199	24.5346
GCUAAGGAACAAUGGAAAGAGCUGAAGG	chr10:58119500-58119825(-)$1	325	228	256	22.2684
GGACCUUGUAUCUCAUCUAAAGGGCCUU	chr1:36757123-36757387(+)$1	264	107	135	24.6029
UCGUGCAAGAUUUUCAUACAAGGUGCAG	chr6:135521624-135521883(+)$1	259	36	64	21.9099
UUCUUUGUUUUAUGUGUGUGGUAAAUGU	chr3:15275409-15275696(+)$1	287	81	109	21.4428
AGAGCCCUCGCUACCCUAUUUAUGGGCC	chr9:131021531-131021788(-)$1	257	37	65	21.7233
GUGUCUCUUCCAGUGAUUUAGAGCUGAA	chr1:55555180-55555425(-)$1	245	160	188	22.9442
AUAGGGGUUUGCUUCUCUUUCUCUGUAU	chr7:127343318-127343576(+)$1	258	119	147	25.3876
GAGUGGUAGUUUAGGAUGGGACUAUUUU	chr11:65824826-65825128(+)$1	302	52	80	24.6714
GGGAGGGAUUGAAGACUGAACCUCCCUU	chr14:23793680-23793925(+)$1	245	187	215	23.7251
UGGGGAUUUAUUGGCUCCUGUCCcuggc	chr20:60927974-60928252(-)$1	278	218	246	24.3379
UUUUAGAAAAUACACAUAAUUUAAAUUU	chr1:247050377-247050651(-)$1	274	184	212	24.6234
GGUGCGGAAGAAUGUGUGCCGUGCCCUG	chr19:12825885-12826162(-)$1	277	214	242	23.7523
CAACAUAGGGCAGGGUAAGUGUGUUGGC	chr1:52249661-52249988(+)$1	327	22	50	25.2662
AUUUCAUUUAUAGAUUUCUUUGAAAUAU	chr4:79766002-79766338(+)$1	336	289	317	24.1850
AUUUUCUUGUUUUCUUUUCUUAGAAAAA	chr6:28876534-28876810(-)$1	276	170	198	22.6769
CCAGGGCGGACACUGAAGACGGACUGGA	chr21:34941271-34941594(+)$1	323	254	282	22.8851
uguccuuucuccucagucacAAGGACAU	chr7:150774387-150774650(-)$1	263	146	174	24.5878
AUGGGGAAAGAUGUGAGAUCCAAGUUUA	chr19:40971291-40971578(-)$1	287	218	246	22.6769
GCCACCACCUACAAAAAAUUGGUGGUAG	chr1:47765335-47765646(-)$1	311	254	282	22.2046
CUCCCCGCACCCCCACUCAGUUUGAGGG	chrX:47086551-47086787(+)$1	236	206	234	22.5869
AGUAAGAUAUUUUUUUUCCCUCUAGCUU	chr5:137520090-137520327(+)$1	237	85	113	22.9192
GUCCAGCUAUUCUGAGCCAAGCUGGUCC	chr7:99754747-99755003(-)$1	256	128	156	23.0932
AUAGGUAUACUAGGGGCAUUAGCUAUUU	chr11:62399800-62400062(-)$1	262	83	111	25.1701
CUCUCCUGCUAGCCCUAAAAGAAGAUCC	chr16:74949864-74950125(-)$1	261	221	249	20.6438
CCUCCGUGUCUCCCUUUCUGCGUGAUUC	chr11:118967644-118967923(-)$1	279	96	124	20.7432
CCUGUGGUAACACCAUCACCCACACGGC	chr1:26880627-26880935(+)$1	308	10	38	24.8101
UAGGAAUAAGUAGAGAAAAAUUCCUGGC	chr12:54676567-54676848(+)$1	281	101	129	25.3648
CCAGUCCCUUCUCUUCUCUGGGACAGAC	chr19:6417570-6417792(-)$1	222	184	212	23.7715
ggcuacuuuuuguauuuuuaguagagac	chr12:57033252-57033494(-)$1	242	83	111	24.7180
UAAGCUUUUUCUUACCAUUAGCUUGCGA	chr15:50872896-50873211(-)$1	315	146	174	23.4222
UAAAUGUUUUUACUGGGUUUUAUACACU	chrX:44922994-44923264(+)$1	270	105	133	22.8732
GAGGAGCCAUGAAACCCCCGCCCUUUAA	chr20:61438742-61439019(+)$1	277	14	42	20.7302
GGCCCUGAGUGCUGAGGAGAGGGUCCCA	chr9:139837556-139837797(-)$1	241	173	201	22.6885
AUCUCCGAGCUCAAAGACAUCCGGCUGC	chr8:145003633-145003892(-)$1	259	185	213	22.7658
GGUAAGGUCCAUUUAUUUCACUUUACCU	chr9:100326366-100326653(+)$1	287	83	111	24.6352
UUAGAAAUUUUAGGUUUUUUUUGUAACG	chr5:179044509-179044746(-)$1	237	26	54	24.9584
CAGGAACGAAUAGAAAAUAGUUUUAAGU	chr12:112479622-112479913(-)$1	291	22	50	25.2846
gaggcucggagagguuaaggggccuguc	chr19:3425082-3425406(+)$1	324	202	230	23.5263
UGGCAGGAGGGAUGAGAGCAAGCCGUGA	chr16:28844595-28844860(+)$1	265	111	139	21.5587
GGGCGCCUGUGGGGGGGUGGGGUCGCCC	chr8:68255143-68255441(-)$1	298	96	124	23.1325
GGGAUCCGUGGUGUUAAAAGGAUGCCUG	chr12:57039438-57039690(-)$1	252	153	181	22.9485
CAGUUGUCAAAAUUAUUUUCUUACAAUC	chr4:54245343-54245587(+)$1	244	146	174	21.8928
GUAAAUAAAAAUAUGAAAGUAUUUCAAG	chr3:180326590-180326832(+)$1	242	84	112	24.8073
auguauuuuuuaauagggaucaugauac	chr13:25889537-25889815(+)$1	278	206	234	23.2467
agugguaagcaagaucaacaugguaucu	chr12:54792174-54792435(-)$1	261	204	232	22.4244
UCUCUCACCAAAGAAGAUUAUUGAGAAG	chr16:31121994-31122250(+)$1	256	43	71	22.9570
UUGCCUAUUUGCAUACUAAAGGCAAAAU	chr14:50942732-50943035(-)$1	303	15	43	22.6464
AUGUCAGAGAACCCCUCCGUCUAUGUGC	chr19:56175054-56175301(+)$1	247	25	53	24.5945
GUUCCUAGUAUGAAGGAGAUGGGGUGGC	chr11:118959014-118959292(+)$1	278	89	117	24.2065

#DB
(((((((............))).)))))	chr15:98508821-98509104(+)$1	1	114	142	24.8707
.((.(.((...........))).)))))	chr7:87516641-87516927(+)$1	1	140	168	22.9204
(((((((............)))))))))	chr1:46033830-46034105(+)$1	1	55	83	26.0185
((.(((.............))).)))))	chr21:46912332-46912603(+)$1	1	87	115	24.4913
..(((((..............)))))..	chr10:126096915-126097165(-)$1	1	61	89	23.4993
.(.((((.............)))).)..	chr19:45570231-45570482(+)$1	1	67	95	23.6050
..(((((............)))))..))	chr11:87024317-87024612(+)$1	1	86	114	24.9722
(.(((((............))).)))))	chr11:67351239-67351499(+)$1	1	171	199	24.5346
(((................)))))...)	chr10:58119500-58119825(-)$1	1	228	256	22.2684
((.((((............)))).))))	chr1:36757123-36757387(+)$1	1	107	135	24.6029
(((((((................)))).	chr6:135521624-135521883(+)$1	1	36	64	21.9099
.((................)).))))))	chr3:15275409-15275696(+)$1	1	81	109	21.4428
((.((((................)))).	chr9:131021531-131021788(-)$1	1	37	65	21.7233
..(.((((...........)))))..))	chr1:55555180-55555425(-)$1	1	160	188	22.9442
(((((((............))))))).)	chr7:127343318-127343576(+)$1	1	119	147	25.3876
(((((((.............))))))))	chr11:65824826-65825128(+)$1	1	52	80	24.6714
((((((..............)))))))(	chr14:23793680-23793925(+)$1	1	187	215	23.7251
.((((((............)))))))))	chr20:60927974-60928252(-)$1	1	218	246	24.3379
.((((((............)))))))))	chr1:247050377-247050651(-)$1	1	184	212	24.6234
(((((((...........))))))).))	chr19:12825885-12826162(-)$1	1	214	242	23.7523
(((((((............)))))))))	chr1:52249661-52249988(+)$1	1	22	50	25.2662
((((((..............))))))))	chr4:79766002-79766338(+)$1	1	289	317	24.1850
.((((((..............)))))).	chr6:28876534-28876810(-)$1	1	170	198	22.6769
((((..((...........))..)))))	chr21:34941271-34941594(+)$1	1	254	282	22.8851
(((((((.............))))))))	chr7:150774387-150774650(-)$1	1	146	174	24.5878
((..(((...........)))..)))).	chr19:40971291-40971578(-)$1	1	218	246	22.6769
(((((((............))))))))(	chr1:47765335-47765646(-)$1	1	254	282	22.2046
(((...((...........))..)))))	chrX:47086551-47086787(+)$1	1	206	234	22.5869
(((.(((.............))).))))	chr5:137520090-137520327(+)$1	1	85	113	22.9192
(.((((((...........)))))).))	chr7:99754747-99755003(-)$1	1	128	156	23.0932
((((.((............)).))))))	chr11:62399800-62400062(-)$1	1	83	111	25.1701
.(((.((............)).)))...	chr16:74949864-74950125(-)$1	1	221	249	20.6438
..(((((............))).))...	chr11:118967644-118967923(-)$1	1	96	124	20.7432
(.(((((............))))).)))	chr1:26880627-26880935(+)$1	1	10	38	24.8101
(((((((............)))))))((	chr12:54676567-54676848(+)$1	1	101	129	25.3648
.(.(((((...........))))).).)	chr19:6417570-6417792(-)$1	1	184	212	23.7715
(((((((............)))))...)	chr12:57033252-57033494(-)$1	1	83	111	24.7180
((((((.............)))))))))	chr15:50872896-50873211(-)$1	1	146	174	23.4222
....(((................)))..	chrX:44922994-44923264(+)$1	1	105	133	22.8732
((((.((............))))))...	chr20:61438742-61439019(+)$1	1	14	42	20.7302
((((((.............)))))))).	chr9:139837556-139837797(-)$1	1	173	201	22.6885
(...(((..............))).)))	chr8:145003633-145003892(-)$1	1	185	213	22.7658
((((((((...........)))))))))	chr9:100326366-100326653(+)$1	1	83	111	24.6352
(((.(((............))).)))))	chr5:179044509-179044746(-)$1	1	26	54	24.9584
..(((((............))))).)))	chr12:112479622-112479913(-)$1	1	22	50	25.2846
.((((((............))))))(((	chr19:3425082-3425406(+)$1	1	202	230	23.5263
((((..(...........)..)))))..	chr16:28844595-28844860(+)$1	1	111	139	21.5587
.(((.((...........)).))).)))	chr8:68255143-68255441(-)$1	1	96	124	23.1325
((.((((............)))).))))	chr12:57039438-57039690(-)$1	1	153	181	22.9485
.((................)).))))))	chr4:54245343-54245587(+)$1	1	146	174	21.8928
..(((((............)))))....	chr3:180326590-180326832(+)$1	1	84	112	24.8073
(((((((................)))))	chr13:25889537-25889815(+)$1	1	206	234	23.2467
((((.((.............)).)).))	chr12:54792174-54792435(-)$1	1	204	232	22.4244
..(((((..............)))))..	chr16:31121994-31122250(+)$1	1	43	71	22.9570
((((((.............)))))).))	chr14:50942732-50943035(-)$1	1	15	43	22.6464
((((.(((...........)))))))))	chr19:56175054-56175301(+)$1	1	25	53	24.5945
(((((((............)))))..))	chr11:118959014-118959292(+)$1	1	89	117	24.2065

#PSSM
g : 0.19	e : 0.15	[ : 0.10	! : 0.10	= : 0.07	f : 0.07	i : 0.05	d : 0.05	" : 0.03	c : 0.03	: : 0.03	# : 0.03	h : 0.01	& : 0.01	b : 0.01	
g : 0.17	e : 0.14	f : 0.12	! : 0.08	b : 0.07	= : 0.07	i : 0.05	[ : 0.05	c : 0.05	d : 0.05	a : 0.03	# : 0.03	h : 0.01	& : 0.01	" : 0.01	
e : 0.24	g : 0.17	f : 0.12	b : 0.10	[ : 0.10	= : 0.05	i : 0.03	d : 0.03	c : 0.03	a : 0.01	! : 0.01	h : 0.01	# : 0.01	" : 0.01	
e : 0.21	g : 0.15	f : 0.12	d : 0.10	[ : 0.07	= : 0.05	c : 0.05	b : 0.05	y : 0.05	i : 0.03	" : 0.03	! : 0.01	h : 0.01	# : 0.01	
c : 0.15	e : 0.15	g : 0.12	f : 0.12	d : 0.10	[ : 0.10	= : 0.05	y : 0.05	i : 0.03	! : 0.03	a : 0.01	h : 0.01	" : 0.01	
c : 0.17	e : 0.15	g : 0.12	f : 0.12	d : 0.10	b : 0.08	= : 0.05	y : 0.05	i : 0.03	! : 0.03	[ : 0.01	h : 0.01	" : 0.01	
c : 0.15	e : 0.15	b : 0.14	d : 0.10	g : 0.08	f : 0.08	v : 0.07	y : 0.05	= : 0.03	i : 0.03	w : 0.03	h : 0.01	a : 0.01	
u : 0.40	v : 0.15	y : 0.12	w : 0.10	t : 0.07	b : 0.05	d : 0.01	f : 0.01	e : 0.01	= : 0.01	c : 0.01	
u : 0.40	t : 0.21	v : 0.15	y : 0.12	w : 0.10	
u : 0.40	t : 0.21	v : 0.15	y : 0.12	w : 0.10	
u : 0.40	t : 0.21	v : 0.15	y : 0.12	w : 0.10	
u : 0.40	t : 0.21	v : 0.15	y : 0.12	w : 0.10	
u : 0.40	t : 0.21	v : 0.15	y : 0.12	w : 0.10	
u : 0.40	t : 0.21	v : 0.15	y : 0.12	w : 0.10	
u : 0.40	t : 0.21	v : 0.15	y : 0.12	w : 0.10	
u : 0.40	t : 0.21	v : 0.15	y : 0.12	w : 0.10	
u : 0.40	t : 0.21	v : 0.15	y : 0.12	w : 0.10	
u : 0.40	t : 0.21	v : 0.15	y : 0.12	w : 0.10	
u : 0.40	v : 0.15	t : 0.14	y : 0.12	w : 0.10	g : 0.01	c : 0.01	a : 0.01	b : 0.01	
b : 0.15	e : 0.14	c : 0.12	w : 0.10	f : 0.10	v : 0.08	g : 0.08	y : 0.07	d : 0.05	= : 0.03	h : 0.01	2 : 0.01	
b : 0.15	c : 0.14	e : 0.14	g : 0.12	f : 0.10	w : 0.07	d : 0.07	y : 0.07	= : 0.05	i : 0.01	h : 0.01	2 : 0.01	] : 0.01	
e : 0.19	c : 0.15	g : 0.12	f : 0.12	d : 0.08	y : 0.07	] : 0.07	= : 0.05	2 : 0.05	a : 0.01	i : 0.01	h : 0.01	b : 0.01	
e : 0.19	g : 0.15	f : 0.14	] : 0.12	d : 0.08	c : 0.08	y : 0.07	= : 0.05	2 : 0.05	i : 0.01	h : 0.01	
e : 0.26	g : 0.15	f : 0.14	d : 0.08	c : 0.08	b : 0.07	= : 0.05	i : 0.05	] : 0.05	a : 0.01	h : 0.01	
g : 0.15	f : 0.14	e : 0.12	] : 0.10	b : 0.08	d : 0.08	= : 0.07	i : 0.05	2 : 0.05	c : 0.05	3 : 0.03	h : 0.01	4 : 0.01	
g : 0.22	e : 0.12	= : 0.08	d : 0.07	c : 0.07	] : 0.07	i : 0.05	2 : 0.05	f : 0.05	a : 0.03	3 : 0.03	: : 0.03	b : 0.03	h : 0.01	5 : 0.01	4 : 0.01	
g : 0.15	e : 0.14	= : 0.10	c : 0.10	3 : 0.08	i : 0.07	d : 0.07	f : 0.05	: : 0.05	] : 0.03	b : 0.03	h : 0.01	5 : 0.01	F : 0.01	4 : 0.01	2 : 0.01	
e : 0.17	g : 0.14	c : 0.14	= : 0.10	i : 0.07	3 : 0.07	] : 0.07	f : 0.05	: : 0.05	d : 0.01	5 : 0.01	a : 0.01	F : 0.01	4 : 0.01	2 : 0.01	b : 0.01	

#score	1339.907335067279
#seq	57
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_transcript_m2_run2.txt

#BEAR
hhhhhhhhlllhhhhhhhh	chr4:71776427-71776666(+)$1	239	98	117	17.3373
hhhhhhhhmmmmhhhhhhh	chr1:33145904-33146144(+)$1	240	92	111	14.3581
hhhhhhhhlllhhhhhhhh	chr16:11935099-11935353(-)$1	254	91	110	17.3373
iiiiiiiillliiiiiiii	chr6:31804374-31804589(+)$1	215	93	112	12.4382
hhhhhhhhlllhhhhhhhh	chrX:135954880-135955166(-)$1	286	70	89	17.3373
hhhhhhhhlllhhhhhhhh	chr19:21637627-21637857(-)$1	230	112	131	17.3373
hhhhhhhhnnnnnhhhhhh	chr1:203771757-203772006(+)$1	249	184	203	13.4895
iiiiiiiillliiiiiiii	chr7:139051635-139051883(+)$1	248	108	127	12.4382
hhhhhhhhlllhhhhhhhh	chr7:26234606-26234818(-)$1	212	108	127	17.3373
hhhhhhoooooohhhhhhh	chr22:22215550-22215784(-)$1	234	201	220	13.5514
hhhhhhhhlllhhhhhhhh	chr7:140161236-140161540(-)$1	304	108	127	17.3373
hhhhhhoooooohhhhhhh	chr22:22193529-22193763(-)$1	234	48	67	13.5514
hhhhhhoooooohhhhhhh	chr1:33262828-33263082(-)$1	254	98	117	13.5514
hhhhhhhhlllhhhhhhhh	chr15:89443330-89443579(-)$1	249	109	128	17.3373
[ggggggglllgggggggd	chr19:8520539-8520798(+)$1	259	236	255	10.2216
iiiiiiiillliiiiiiii	chr1:171466535-171466783(+)$1	248	91	110	12.4382
hhhhhhhhlllhhhhhhhh	chr6:36564788-36565040(+)$1	252	173	192	17.3373
hhhhhhhhlllhhhhhhhh	chr14:23533915-23534200(-)$1	285	97	116	17.3373
[ggggggglllggggggg]	chr7:148700599-148700861(-)$1	262	213	232	10.4907
hhhhhhoooooohhhhhhh	chr11:66434293-66434561(+)$1	268	93	112	13.5514
hhhhhhhhlllhhhhhhhh	chr1:1329993-1330219(-)$1	226	92	111	17.3373
hhhhhhhhmmmmhhhhhhh	chr16:21522448-21522718(-)$1	270	71	90	14.3581
hhhhhhhhlllhhhhhhhh	chr19:29024964-29025178(-)$1	214	108	127	17.3373
hhhhhhhhmmmmhhhhhhh	chr1:33145873-33146104(+)$1	231	123	142	14.3581
hhhhhhhhlllhhhhhhhh	chr15:41593056-41593314(+)$1	258	132	151	17.3373
hhhhhhhhlllhhhhhhhh	chr17:56073738-56073949(-)$1	211	107	126	17.3373
hhhhhhhhlllhhhhhhhh	chr1:113641772-113642048(+)$1	276	107	126	17.3373
hhhhhhhhlllhhhhhhhh	chr12:107360946-107361198(+)$1	252	109	128	17.3373
iiiiiiiillliiiiiiii	chr16:88728068-88728307(-)$1	239	80	99	12.4382
iiiiiiiillliiiiiiii	chr1:171466515-171466735(+)$1	220	111	130	12.4382
hhhhhhhhnnnnnhhhhhh	chrX:48770824-48771115(-)$1	291	210	229	13.4895
hhhhhhhhlllhhhhhhhh	chr1:28834596-28834814(+)$1	218	58	77	17.3373
hhhhhhhhlllhhhhhhhh	chr19:34922068-34922327(+)$1	259	108	127	17.3373
hhhhhhoooooohhhhhhh	chr11:125509191-125509452(+)$1	261	222	241	13.5514
hhhhhhhhlllhhhhhhhh	chr19:13053351-13053564(+)$1	213	77	96	17.3373
hhhhhhhhlllhhhhhhhh	chr1:1330019-1330237(-)$1	218	110	129	17.3373
iiiiiiiillliiiiiiii	chr6:161480080-161480343(+)$1	263	24	43	12.4382
hhhhhhhhnnnnnhhhhhh	chr9:134081443-134081760(+)$1	317	229	248	13.4895
hhhhhhhhlllhhhhhhhh	chr19:1422578-1422920(+)$1	342	177	196	17.3373
iiiiiiiillliiiiiiii	chr3:6612131-6612395(+)$1	264	111	130	12.4382
hhhhhhhhlllhhhhhhhh	chr17:80052556-80052768(-)$1	212	107	126	17.3373
hhhhhhhhlllhhhhhhhh	chr11:61133852-61134111(+)$1	259	108	127	17.3373
hhhhhhhhlllhhhhhhhh	chr14:103072872-103073178(+)$1	306	116	135	17.3373
hhhhhhhhmmmmhhhhhhh	chr12:124082028-124082301(+)$1	273	133	152	14.3581
hhhhhhhhlllhhhhhhhh	chr7:75095009-75095267(-)$1	258	109	128	17.3373
hhhhhhhhlllhhhhhhhh	chr1:29387693-29387903(+)$1	210	108	127	17.3373
hhhhhhhhlllhhhhhhhh	chr7:140157331-140157604(-)$1	273	109	128	17.3373
ggg!!ccclllccc]gggg	chr4:2503846-2504147(+)$1	301	148	167	9.6886
hhhhhhhhlllhhhhhhhh	chrX:131194555-131194842(+)$1	287	108	127	17.3373
hhhhhhhhnnnnnhhhhhh	chr7:117825223-117825493(+)$1	270	2	21	13.4895
hhhhhhhhlllhhhhhhhh	chr7:26234568-26234806(-)$1	238	96	115	17.3373

#otherMatches

#Seq PSSM
gacagagcuuugcucuguc	chr4:71776427-71776666(+)$1	239	98	117	17.3373
GUAAAGAUGUAUGUUUUUA	chr1:33145904-33146144(+)$1	240	92	111	14.3581
gacagggucucacucuguc	chr16:11935099-11935353(-)$1	254	91	110	17.3373
acaugagucucacucaugu	chr6:31804374-31804589(+)$1	215	93	112	12.4382
AAACAUGCUUCGUAUGUUU	chrX:135954880-135955166(-)$1	286	70	89	17.3373
gacagagucucacucuguu	chr19:21637627-21637857(-)$1	230	112	131	17.3373
AUCUCCCAGUAGUUGGGAG	chr1:203771757-203772006(+)$1	249	184	203	13.4895
gagacagagucucugucuc	chr7:139051635-139051883(+)$1	248	108	127	12.4382
gacggagccuugcucuguc	chr7:26234606-26234818(-)$1	212	108	127	17.3373
ggugugugcuaccaugccu	chr22:22215550-22215784(-)$1	234	201	220	13.5514
aacagagucucacucuguu	chr7:140161236-140161540(-)$1	304	108	127	17.3373
ggcaugagccaccaugccu	chr22:22193529-22193763(-)$1	234	48	67	13.5514
ugucuuuuuuuugagacaa	chr1:33262828-33263082(-)$1	254	98	117	13.5514
gacagagccuugcucuguc	chr15:89443330-89443579(-)$1	249	109	128	17.3373
UGAAAUUUUUUGAAUUUUG	chr19:8520539-8520798(+)$1	259	236	255	10.2216
gacagggucuuacucuguc	chr1:171466535-171466783(+)$1	248	91	110	12.4382
aaccucggccuccgggguu	chr6:36564788-36565040(+)$1	252	173	192	17.3373
gacggagucuugcucuguc	chr14:23533915-23534200(-)$1	285	97	116	17.3373
uugaaaaauuuuuuuuuac	chr7:148700599-148700861(-)$1	262	213	232	10.4907
uuuuuuuuuuuuaagagag	chr11:66434293-66434561(+)$1	268	93	112	13.5514
gacggagucuuacucuguc	chr1:1329993-1330219(-)$1	226	92	111	17.3373
uauauauauauauauauau	chr16:21522448-21522718(-)$1	270	71	90	14.3581
gacagagucuugcucuguc	chr19:29024964-29025178(-)$1	214	108	127	17.3373
GUAAAGAUGUAUGUUUUUA	chr1:33145873-33146104(+)$1	231	123	142	14.3581
gauagaguuucacucuguc	chr15:41593056-41593314(+)$1	258	132	151	17.3373
gacagugucuugcacuguc	chr17:56073738-56073949(-)$1	211	107	126	17.3373
gacagggucuugcucuguc	chr1:113641772-113642048(+)$1	276	107	126	17.3373
gacagagucuuacucuguc	chr12:107360946-107361198(+)$1	252	109	128	17.3373
agaguggcugggccauuuu	chr16:88728068-88728307(-)$1	239	80	99	12.4382
gacagggucuuacucuguc	chr1:171466515-171466735(+)$1	220	111	130	12.4382
CCCAGGAUUCUUUAUUCUG	chrX:48770824-48771115(-)$1	291	210	229	13.4895
CCAAGUAACUCUUAUUUGG	chr1:28834596-28834814(+)$1	218	58	77	17.3373
gauagggucucacucuguc	chr19:34922068-34922327(+)$1	259	108	127	17.3373
ggugugaaccaccacaccu	chr11:125509191-125509452(+)$1	261	222	241	13.5514
gacagagucuugcucuguc	chr19:13053351-13053564(+)$1	213	77	96	17.3373
gacggagucuuacucuguc	chr1:1330019-1330237(-)$1	218	110	129	17.3373
ggagaaauuugauuuuucc	chr6:161480080-161480343(+)$1	263	24	43	12.4382
caggugcacacacugugcc	chr9:134081443-134081760(+)$1	317	229	248	13.4895
GUCAGCUGGGUCAGCUGGC	chr19:1422578-1422920(+)$1	342	177	196	17.3373
gauggagucucgcucuguc	chr3:6612131-6612395(+)$1	264	111	130	12.4382
gacggagucucacucuguc	chr17:80052556-80052768(-)$1	212	107	126	17.3373
gacagagucucgcucuguc	chr11:61133852-61134111(+)$1	259	108	127	17.3373
gauagggucucacccuguc	chr14:103072872-103073178(+)$1	306	116	135	17.3373
CAGUGGCCUUUGGGCCACU	chr12:124082028-124082301(+)$1	273	133	152	14.3581
gacagggugucacucuguu	chr7:75095009-75095267(-)$1	258	109	128	17.3373
gacagagucucgcucuguc	chr1:29387693-29387903(+)$1	210	108	127	17.3373
gacagagucuugcuuuguc	chr7:140157331-140157604(-)$1	273	109	128	17.3373
UCUGCCAGACCCUGAGGAG	chr4:2503846-2504147(+)$1	301	148	167	9.6886
gacagggucucacucuguc	chrX:131194555-131194842(+)$1	287	108	127	17.3373
AGAAAGAGGUUUUCUUUUU	chr7:117825223-117825493(+)$1	270	2	21	13.4895
gacggagccuugcucuguc	chr7:26234568-26234806(-)$1	238	96	115	17.3373

#DB
((((((((...))))))))	chr4:71776427-71776666(+)$1	1	98	117	17.3373
((((((((....)))))))	chr1:33145904-33146144(+)$1	1	92	111	14.3581
((((((((...))))))))	chr16:11935099-11935353(-)$1	1	91	110	17.3373
((((((((...))))))))	chr6:31804374-31804589(+)$1	1	93	112	12.4382
((((((((...))))))))	chrX:135954880-135955166(-)$1	1	70	89	17.3373
((((((((...))))))))	chr19:21637627-21637857(-)$1	1	112	131	17.3373
((((((((.....))))))	chr1:203771757-203772006(+)$1	1	184	203	13.4895
((((((((...))))))))	chr7:139051635-139051883(+)$1	1	108	127	12.4382
((((((((...))))))))	chr7:26234606-26234818(-)$1	1	108	127	17.3373
((((((......)))))))	chr22:22215550-22215784(-)$1	1	201	220	13.5514
((((((((...))))))))	chr7:140161236-140161540(-)$1	1	108	127	17.3373
((((((......)))))))	chr22:22193529-22193763(-)$1	1	48	67	13.5514
((((((......)))))))	chr1:33262828-33263082(-)$1	1	98	117	13.5514
((((((((...))))))))	chr15:89443330-89443579(-)$1	1	109	128	17.3373
.(((((((...))))))))	chr19:8520539-8520798(+)$1	1	236	255	10.2216
((((((((...))))))))	chr1:171466535-171466783(+)$1	1	91	110	12.4382
((((((((...))))))))	chr6:36564788-36565040(+)$1	1	173	192	17.3373
((((((((...))))))))	chr14:23533915-23534200(-)$1	1	97	116	17.3373
.(((((((...))))))).	chr7:148700599-148700861(-)$1	1	213	232	10.4907
((((((......)))))))	chr11:66434293-66434561(+)$1	1	93	112	13.5514
((((((((...))))))))	chr1:1329993-1330219(-)$1	1	92	111	17.3373
((((((((....)))))))	chr16:21522448-21522718(-)$1	1	71	90	14.3581
((((((((...))))))))	chr19:29024964-29025178(-)$1	1	108	127	17.3373
((((((((....)))))))	chr1:33145873-33146104(+)$1	1	123	142	14.3581
((((((((...))))))))	chr15:41593056-41593314(+)$1	1	132	151	17.3373
((((((((...))))))))	chr17:56073738-56073949(-)$1	1	107	126	17.3373
((((((((...))))))))	chr1:113641772-113642048(+)$1	1	107	126	17.3373
((((((((...))))))))	chr12:107360946-107361198(+)$1	1	109	128	17.3373
((((((((...))))))))	chr16:88728068-88728307(-)$1	1	80	99	12.4382
((((((((...))))))))	chr1:171466515-171466735(+)$1	1	111	130	12.4382
((((((((.....))))))	chrX:48770824-48771115(-)$1	1	210	229	13.4895
((((((((...))))))))	chr1:28834596-28834814(+)$1	1	58	77	17.3373
((((((((...))))))))	chr19:34922068-34922327(+)$1	1	108	127	17.3373
((((((......)))))))	chr11:125509191-125509452(+)$1	1	222	241	13.5514
((((((((...))))))))	chr19:13053351-13053564(+)$1	1	77	96	17.3373
((((((((...))))))))	chr1:1330019-1330237(-)$1	1	110	129	17.3373
((((((((...))))))))	chr6:161480080-161480343(+)$1	1	24	43	12.4382
((((((((.....))))))	chr9:134081443-134081760(+)$1	1	229	248	13.4895
((((((((...))))))))	chr19:1422578-1422920(+)$1	1	177	196	17.3373
((((((((...))))))))	chr3:6612131-6612395(+)$1	1	111	130	12.4382
((((((((...))))))))	chr17:80052556-80052768(-)$1	1	107	126	17.3373
((((((((...))))))))	chr11:61133852-61134111(+)$1	1	108	127	17.3373
((((((((...))))))))	chr14:103072872-103073178(+)$1	1	116	135	17.3373
((((((((....)))))))	chr12:124082028-124082301(+)$1	1	133	152	14.3581
((((((((...))))))))	chr7:75095009-75095267(-)$1	1	109	128	17.3373
((((((((...))))))))	chr1:29387693-29387903(+)$1	1	108	127	17.3373
((((((((...))))))))	chr7:140157331-140157604(-)$1	1	109	128	17.3373
(((..(((...))).))))	chr4:2503846-2504147(+)$1	1	148	167	9.6886
((((((((...))))))))	chrX:131194555-131194842(+)$1	1	108	127	17.3373
((((((((.....))))))	chr7:117825223-117825493(+)$1	1	2	21	13.4895
((((((((...))))))))	chr7:26234568-26234806(-)$1	1	96	115	17.3373

#PSSM
h : 0.80	i : 0.13	[ : 0.03	g : 0.01	
h : 0.80	i : 0.13	g : 0.05	
h : 0.80	i : 0.13	g : 0.05	
h : 0.80	i : 0.13	g : 0.03	! : 0.01	
h : 0.80	i : 0.13	g : 0.03	! : 0.01	
h : 0.80	i : 0.13	g : 0.03	c : 0.01	
h : 0.70	i : 0.13	o : 0.09	g : 0.03	c : 0.01	
h : 0.70	i : 0.13	o : 0.09	g : 0.03	c : 0.01	
l : 0.74	o : 0.09	m : 0.07	n : 0.07	
l : 0.74	o : 0.09	m : 0.07	n : 0.07	
l : 0.74	o : 0.09	m : 0.07	n : 0.07	
h : 0.54	i : 0.13	o : 0.09	m : 0.07	n : 0.07	g : 0.03	c : 0.01	
h : 0.72	i : 0.13	n : 0.07	g : 0.03	c : 0.01	
h : 0.80	i : 0.13	g : 0.03	c : 0.01	
h : 0.80	i : 0.13	g : 0.03	] : 0.01	
h : 0.80	i : 0.13	g : 0.05	
h : 0.80	i : 0.13	g : 0.05	
h : 0.80	i : 0.13	g : 0.05	
h : 0.80	i : 0.13	d : 0.01	] : 0.01	g : 0.01	

#score	782.0631810950746
#seq	51
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_CDS_m1_run1.txt

#BEAR
ddd####iiiiiiiiirrrrrrrrriiiiiiiii333d	chr16:23690168-23690412(+)$1	244	20	58	10.9007
:eeeee[ccc!!a[ddddoooooodddd]accc]eeee	chr1:154600239-154600494(-)$1	255	51	89	11.8233
cc]bb:ggggggg[cccooooooccc]ggggggg:ccc	chr15:66797025-66797275(-)$1	250	99	137	10.3082
[eeeee[a[ccc"""ccclllccc333ccca]eeeee]	chr1:243388377-243388670(-)$1	293	182	220	12.5734
iiiiiiiii!!bb[ddddnnnnndddd]bb]iiiiiii	chr11:62400452-62400676(-)$1	224	23	61	13.7599
[a[===============nnnnn===============	chr1:1560283-1560561(+)$1	278	21	59	15.2802
bb[bb!!ccc[a[eeeeennnnneeeee]a4444ccc2	chr21:45223344-45223628(+)$1	284	128	166	13.1882
eeeeedddd[ccc[ddddooooooddddccc]dddd22	chr19:1011074-1011399(-)$1	325	147	185	11.2974
=====ccc%%%%%%cccccclllccc333cccccc]==	chr11:62285221-62285458(-)$1	237	13	51	10.2128
[ffffff[dddd[a[cccnnnnnccc]a]dddd333ff	chr11:62299314-62299624(-)$1	310	36	74	12.8536
ggggggggggggg"""bbnnnnnbb333gggggggDDD	chr18:33719335-33719576(+)$1	241	142	180	11.3982
ff:eeeee!!ccc[ddddnnnnndddd]ccc]eeeee:	chr19:3979779-3979997(-)$1	218	44	82	11.8963
fff[cccdddd!!ccc[cccooooooccc]ccc]dddd	chr17:8417096-8417313(-)$1	217	132	170	9.7982
ddd####eeeeexxxxxxxxxxxxxxxeeeee22dddd	chr11:62285879-62286131(-)$1	252	59	97	9.5402
###iiiiiiiii[aeeeeellleeeee22a]iiiiiii	chr2:178129080-178129369(-)$1	289	106	144	11.0774
fccc[eeeee$$$$$cccrrrrrrrrrccc4444eeee	chr19:39926240-39926448(-)$1	208	135	173	10.3296
ccc!!dddda$$$$$cccmmmmccc22a]dddd]ccc]	chr17:65909148-65909390(+)$1	242	39	77	10.4904
dddd[ffffff"""ddddnnnnnddddffffff]dddd	chr19:39926387-39926596(-)$1	209	66	104	13.2225
ddd[ddddffffff!!ccclllccc22ffffff]dddd	chr8:48872501-48872753(-)$1	252	101	139	10.2987
ddd!!ccc[a[bb[ddddoooooodddd]bbaccc555	chr20:62626226-62626447(+)$1	221	177	215	9.8336
FFFFggggggg!!eeeeeooooooeeeeegggggggff	chr19:58905764-58906012(+)$1	248	16	54	9.9306
ddddbb[bb[ccc[ddddoooooodddd]ccc]bb]bb	chr11:763796-764061(+)$1	265	67	105	10.7351
ddd####eeeeexxxxxxxxxxxxxxxeeeee22dddd	chr11:62285992-62286249(-)$1	257	177	215	9.5402
ccc[cccffffff[ddddmmmmdddd]ffffff333cc	chr19:1014093-1014326(-)$1	233	99	137	9.8394
$ccc!!eeeee[ggggggglllggggggg4444eeeee	chr14:75265156-75265420(+)$1	264	191	229	10.1614
dd[dddd[ccc[ffffffnnnnnffffffccc]ddddd	chr4:104062952-104063166(-)$1	214	2	40	11.5965
b[bb"""dddd[ccccccnnnnnccc22ccc]dddd33	chr11:62285426-62285659(-)$1	233	122	160	13.3056
gg"""ggggggg"""cccnnnnnccc]ggggggg333g	chr13:113209127-113209425(-)$1	298	37	75	15.8619
eeeee:==========bbnnnnnbb22==========:	chr13:98671866-98672136(+)$1	270	160	198	12.2083
:::eeeee"""bb[ddddnnnnndddd]bb333eeeee	chr11:108593940-108594258(+)$1	318	136	174	10.4051
eee"""ccc[a"""fffffflllffffff4444a]ccc	chr22:38891826-38892041(-)$1	215	111	149	11.3125
HHbb!!ccc[bb"""ccclllccc333bb]ccc4444b	chr17:35306289-35306565(+)$1	276	211	249	10.8698
cc[dddd!!gggggggbbnnnnnbb]ggggggg]dddd	chr1:183596534-183596802(-)$1	268	105	143	12.5440
========"""ccc[cccnnnnncccccc22=======	chr12:49666495-49666738(+)$1	243	88	126	15.1416
[bb!!ccc!!ccc[bbbbnnnnnbb]bb]ccc]ccc22	chr22:20800697-20800981(-)$1	284	120	158	12.1576
b[iiiiiiiii####ddddmmmmddddiiiiiiiiibb	chr11:61089035-61089270(-)$1	235	185	223	11.0638
"""bb[bb[ffffff!!aooooooa22ffffff]bb]b	chr12:56498355-56498640(+)$1	285	115	153	9.5260
ggggggga[cccaccccccmmmmccc4444ccc]a]cc	chr11:61557156-61557406(-)$1	250	126	164	11.5384
###bb[ccc[a"""ddddoooooodddd22a]ccc]bb	chr1:228336383-228336642(+)$1	259	82	120	12.5972
#eeeeeccc[dddd!!bbnnnnnbb22dddd333ccc4	chr2:71653837-71654099(+)$1	262	179	217	12.2612
dddd$$$$$eeeee[cccnnnnnccc]eeeee333ddd	chr16:725956-726265(+)$1	309	89	127	12.7947
ddddffffffccc[ddddnnnnndddd]ccc]ffffff	chr5:36241725-36241980(-)$1	255	167	205	12.3172
dd[bbddddbb####cccnnnnnccc4444bb]dddd]	chr7:151874477-151874713(-)$1	236	51	89	13.3602
ddd[eeeee[a"""fffffflllffffff333a]eeee	chr15:91422982-91423202(+)$1	220	53	91	10.7047
adddd[ccc!!a[eeeeennnnneeeee]a22ccc]dd	chr2:48025680-48025944(+)$1	264	56	94	13.2464
cc!!ccc"""ccc[ddddnnnnndddd]ccc]ccc]cc	chr16:1821053-1821341(-)$1	288	1	39	14.7511
ggggggccc[ccc[cccccclllccc22ccc]cccccc	chr2:54197735-54197981(-)$1	246	91	129	12.6118
g]a:eeeee$$$$$ddddnnnnndddd4444eeeeeDD	chr4:13601208-13601464(-)$1	256	154	192	10.3936
:dddd[a!!eeeee[ccclllccc22eeeee]a]dddd	chr11:75115083-75115311(+)$1	228	33	71	9.7576
ffff:iiiiiiiii[cccnnnnnccciiiiiiiii:::	chr1:12337783-12338029(+)$1	246	37	75	10.9495
"bb[ggggggg####ccclllccc4444ggggggg]bb	chr12:49666689-49666938(+)$1	249	85	123	12.5543
fff!!ccc####a[eeeeennnnneeeee]a333ccc4	chr3:122785876-122786221(+)$1	345	254	292	13.2835
!!eeeeeffffff[ddddllldddd4444ffffff333	chr8:145620028-145620296(-)$1	268	26	64	10.3457
c####eeeee[ccc[cccnnnnnccc]ccceeeee666	chr17:62499833-62500090(-)$1	257	128	166	12.5504
$$$$==============lll==============eee	chr11:62293172-62293416(-)$1	244	150	188	12.0952
eee[a"""ccc[eeeeeannnnna]eeeee]cccaeee	chr19:19021694-19021908(-)$1	214	29	67	12.7019
fffff!!ccceeeee[bbnnnnnbb]eeeee22ccc33	chr11:62284828-62285098(-)$1	270	114	152	11.5439
=========%%%%%%cccooooooccc==========d	chr11:62300890-62301145(-)$1	255	197	235	11.5546
ee"""bb[bb"""eeeeennnnneeeee4444bb]bb]	chr11:62285494-62285752(-)$1	258	134	172	11.8981
ddddddd!!ccc"""cccnnnnnccc333ccc4444dd	chr1:214819016-214819246(+)$1	230	125	163	15.5496
fff]bbdddd!!bb[cccnnnnnccc]bb22dddd===	chr8:144999527-144999784(-)$1	257	25	63	11.2951
"a[gggggggeeeeecccooooooccc]eeeee22ggg	chr5:176737580-176737855(-)$1	275	138	176	11.4794

#otherMatches

#Seq PSSM
CGGGGAGGAGCGGAGCGGUGCGGAGGCUCUGCUCGGAU	chr16:23690168-23690412(+)$1	244	20	58	10.9007
AUUCCCGACUGAAGGUAGAGAAGGCUACGUGGUGGGGG	chr1:154600239-154600494(-)$1	255	51	89	11.8233
GUGGCAGCAGCCGGGCUGAGAGGAGCGUGGCUGUCUCC	chr15:66797025-66797275(-)$1	250	99	137	10.3082
UCAUGUUGCAGGUAAUUGUGUCAAGCUUCUCUAUAUGU	chr1:243388377-243388670(-)$1	293	182	220	12.5734
GAGGGGCUCGGGUUCCUUGGGCUGGGGUGCAGGGCUCC	chr11:62400452-62400676(-)$1	224	23	61	13.7599
GUCAGGGCUGGGCUGUGGCUGGCUCAUGGCUCAGCCUU	chr1:1560283-1560561(+)$1	278	21	59	15.2802
GCGCGGGCAGAGGCUGGUGAGCAGCCAGGCACAGCUGA	chr21:45223344-45223628(+)$1	284	128	166	13.1882
GGGGCUGGGCCUGGCAGGGUGGGACCUGCAGCCCCGAC	chr19:1011074-1011399(-)$1	325	147	185	11.2974
GGCAUUGGUGUUCAAGGCCUAGAAGGAAACCUCCAGAU	chr11:62285221-62285458(-)$1	237	13	51	10.2128
AGAAGUGGAUGUGAACCUGCCCAAGGCUGAUGUGGACA	chr11:62299314-62299624(-)$1	310	36	74	12.8536
GUUACGCUUCCAUUCUGUGCAAGGCUCUGUGGAAGGAG	chr18:33719335-33719576(+)$1	241	142	180	11.3982
CACCUUCGAGCACGCGCACAACAUGCGGGUGAUGAAGU	chr19:3979779-3979997(-)$1	218	44	82	11.8963
GCCUUAAAGGUCUUGCAGCGGAACUGUGCCGCGUACCU	chr17:8417096-8417313(-)$1	217	132	170	9.7982
CUCGAAGGGCCCGAUGUUUCUCUAAAGGGGCCAGGAGU	chr11:62285879-62286131(-)$1	252	59	97	9.5402
GCAGGUGCUGCCUCGGCCCUCUGGGCCCUGCGGUGGUG	chr2:178129080-178129369(-)$1	289	106	144	11.0774
CAAUGGUCUCAUCAAGGUGAACGGGCGGCCCCUGGAGA	chr19:39926240-39926448(-)$1	208	135	173	10.3296
AAGUUGGCCCGAAAAGGAGGAAUCCGAGAGGUCCCUUA	chr17:65909148-65909390(+)$1	242	39	77	10.4904
GUCCAAGGGCCCGCUGCAGUCUGUGCAGGUCUUCGGAC	chr19:39926387-39926596(-)$1	209	66	104	13.2225
UGCUGCGGCUGCAGGAGACCUUGUCCGCUGCGGACCGC	chr8:48872501-48872753(-)$1	252	101	139	10.2987
CAGACCGGAGAGAACCAUACCUCAGUGGAUCCCCGACA	chr20:62626226-62626447(+)$1	221	177	215	9.8336
CUGGCAGCAUCAGUUGGGAGUGGCCCCAGGGUGCUGGA	chr19:58905764-58906012(+)$1	248	16	54	9.9306
UCCUCACCAUCUCACCCAAGCUCCUGGGAGAGCUGCUG	chr11:763796-764061(+)$1	265	67	105	10.7351
CUCGAAGGGCCCGAUGUUUCUCUAAAGGGGCCAGGAGU	chr11:62285992-62286249(-)$1	257	177	215	9.5402
GCUGACCAUGGAGAUGUUUGGGAACAGCUCCAUCAAGG	chr19:1014093-1014326(-)$1	233	99	137	9.8394
GGCUGGCAGUCAGGAGAGGGGACCUCUUCGAAGGGCUG	chr14:75265156-75265420(+)$1	264	191	229	10.1614
AACAGUGUUAUUAUUUUUACUAAGAAAAUAUAUCACUU	chr4:104062952-104063166(-)$1	214	2	40	11.5965
AUGUGGACUUUAACUUGGAAGGACCAAAAGUGAAAGGG	chr11:62285426-62285659(-)$1	233	122	160	13.3056
GCACCAUAAUAUCUAUUGUCUGUUAAAAUAUUGUCUAG	chr13:113209127-113209425(-)$1	298	37	75	15.8619
UUCAGACUUUCAAUUAUCUGUGUGACCUGAUUGAAAGG	chr13:98671866-98672136(+)$1	270	160	198	12.2083
AAGUUCCUACACAGUUCUUGGACAGAGAUGAGGAGGAA	chr11:108593940-108594258(+)$1	318	136	174	10.4051
GCUCCUACCAGAGAGCUUGCCCAGCAAGUACAGCAGGU	chr22:38891826-38892041(-)$1	215	111	149	11.3125
GCGGACCCCGAGGAAGGUGAGGCCGGACUGGGGCAGGC	chr17:35306289-35306565(+)$1	276	211	249	10.8698
UCGUGUCUUGACUGCAAGAAAAACUGUGUAGUCUGGCA	chr1:183596534-183596802(-)$1	268	105	143	12.5440
CCAUGGUAAAUACAUGGCUUGCUGCCUGUUAUACCGUG	chr12:49666495-49666738(+)$1	243	88	126	15.1416
AGCAACACUUGGCACACACUGGCUGAUGGGCCUGUGCG	chr22:20800697-20800981(-)$1	284	120	158	12.1576
GACUUACCAGGCAUCAAAGGUAGCUUUUUUGGUGGGCA	chr11:61089035-61089270(-)$1	235	185	223	11.0638
GAGGCGGCGGCGGCUCAGGGGAAACGAGGCUGCAGUGG	chr12:56498355-56498640(+)$1	285	115	153	9.5260
GCAUCUACGUGUGAGCACCCAAGGGUAAGAGCUGCAAU	chr11:61557156-61557406(-)$1	250	126	164	11.5384
UUGGCAGGCGAUACGGCAGCUCUGUGCCCUUGGCCAGC	chr1:228336383-228336642(+)$1	259	82	120	12.5972
AUCUCCUCAAACAGGAACGCUUGGUAACUGUGGAUGAA	chr2:71653837-71654099(+)$1	262	179	217	12.2612
gagggagggagggcgggCAGCUGGCUGGUCUUGGACCU	chr16:725956-726265(+)$1	309	89	127	12.7947
ggccccgccgcgcggccccggcugggcggugacggugg	chr5:36241725-36241980(-)$1	255	167	205	12.3172
GAACAAGUGCCACCAUCUCAACAAGAGCAAGGUCAUUC	chr7:151874477-151874713(-)$1	236	51	89	13.3602
UGGAGUUAGGUAGAAGGCACUCUGUGCCUGACAGCUGA	chr15:91422982-91423202(+)$1	220	53	91	10.7047
CCUUGCCUGGCAGGUAGGCACAACUUACGUAACAGAUA	chr2:48025680-48025944(+)$1	264	56	94	13.2464
GAGAUUGUGCGGCGCUUCGAGAGGAAGGGCUUCAAGUU	chr16:1821053-1821341(-)$1	288	1	39	14.7511
Agcccccggagccgggcgggcgucccgagccgggcccg	chr2:54197735-54197981(-)$1	246	91	129	12.6118
AGGAGGGGCACAACGGGCCAUCAGUCCACAAGCCCUCU	chr4:13601208-13601464(-)$1	256	154	192	10.3936
AGGUUGUGGUGUCUGGGAAACUCCGAGGACAGAGGGCU	chr11:75115083-75115311(+)$1	228	33	71	9.7576
GGGGAGUCCUGAGUUGUUGGUGGGACACUUGGGACAGA	chr1:12337783-12338029(+)$1	246	37	75	10.9495
AGAGAGCUGUGUGCAUGCUGAGCAAUACCACAGCUGUU	chr12:49666689-49666938(+)$1	249	85	123	12.5543
CUCUGCGGAACGUGCGGGGAGCUGCCCCGGGGCACCGG	chr3:122785876-122786221(+)$1	345	254	292	13.2835
AGGCAGCAUCCUGAGGCCCCUGGCCCCCACAGGAUCGA	chr8:145620028-145620296(-)$1	268	26	64	10.3457
AUCAAUCAUCAGCCAUUCCUAGAGAGAGGCGAUGGGCC	chr17:62499833-62500090(-)$1	257	128	166	12.5504
AAAGUGGACAUUGAUGUCCCAGAUGUUAAUGUUCAGGG	chr11:62293172-62293416(-)$1	244	150	188	12.0952
GGAAGUUCGGUGUGGUCCUGGAUGAGAUCAAGCCCUCC	chr19:19021694-19021908(-)$1	214	29	67	12.7019
CCAGGCUCCUGGGCUGAGUGUGUCUGGGCCUCAAGGUC	chr11:62284828-62285098(-)$1	270	114	152	11.5439
UUGGUGUCUCAACAGGGCGUGAGGGCCAGACACCAAAG	chr11:62300890-62301145(-)$1	255	197	235	11.5546
CCAAGGGGCCACAGGUUUCUGGCGAACUGAAGGGGCCA	chr11:62285494-62285752(-)$1	258	134	172	11.8981
GCCAGACUGAGUGAAUCAGAUUAUGAAAAGCUGAAUGU	chr1:214819016-214819246(+)$1	230	125	163	15.5496
CCGGCUGCGCAUCGAGGAGGAGAUCCGCGUGGUGCGCC	chr8:144999527-144999784(-)$1	257	25	63	11.2951
UCCUCUCUGGCAUUGGCAGGUCAGUGCACAAUGAACUG	chr5:176737580-176737855(-)$1	275	138	176	11.4794

#DB
(((....(((((((((.........)))))))))...)	chr16:23690168-23690412(+)$1	1	20	58	10.9007
.(((((.(((..(.((((......)))).)))).))))	chr1:154600239-154600494(-)$1	1	51	89	11.8233
)).)).(((((((.(((......))).))))))).(((	chr15:66797025-66797275(-)$1	1	99	137	10.3082
.(((((.(.(((...(((...)))...)))).))))).	chr1:243388377-243388670(-)$1	1	182	220	12.5734
(((((((((..((.((((.....)))).)).)))))))	chr11:62400452-62400676(-)$1	1	23	61	13.7599
.(.(((((((((((((((.....)))))))))))))))	chr1:1560283-1560561(+)$1	1	21	59	15.2802
((.((..(((.(.(((((.....))))).)....))).	chr21:45223344-45223628(+)$1	1	128	166	13.1882
(((((((((.(((.((((......))))))).))))..	chr19:1011074-1011399(-)$1	1	147	185	11.2974
((((((((......((((((...)))...)))))).))	chr11:62285221-62285458(-)$1	1	13	51	10.2128
.((((((.((((.(.(((.....))).).))))...))	chr11:62299314-62299624(-)$1	1	36	74	12.8536
))))))(((((((...((.....))...))))))))))	chr18:33719335-33719576(+)$1	1	142	180	11.3982
)).(((((..(((.((((.....)))).))).))))).	chr19:3979779-3979997(-)$1	1	44	82	11.8963
(((.(((((((..(((.(((......))).))).))))	chr17:8417096-8417313(-)$1	1	132	170	9.7982
(((....(((((...............)))))..))))	chr11:62285879-62286131(-)$1	1	59	97	9.5402
...(((((((((.((((((...)))))..).)))))))	chr2:178129080-178129369(-)$1	1	106	144	11.0774
((((.(((((.....(((.........)))....))))	chr19:39926240-39926448(-)$1	1	135	173	10.3296
(((..(((((.....(((....)))..).)))).))).	chr17:65909148-65909390(+)$1	1	39	77	10.4904
((((.((((((...((((.....)))))))))).))))	chr19:39926387-39926596(-)$1	1	66	104	13.2225
(((.((((((((((..(((...)))..)))))).))))	chr8:48872501-48872753(-)$1	1	101	139	10.2987
(((..(((.(.((.((((......)))).))))))...	chr20:62626226-62626447(+)$1	1	177	215	9.8336
(((((((((((..(((((......))))))))))))((	chr19:58905764-58906012(+)$1	1	16	54	9.9306
((((((.((.(((.((((......)))).))).)).))	chr11:763796-764061(+)$1	1	67	105	10.7351
(((....(((((...............)))))..))))	chr11:62285992-62286249(-)$1	1	177	215	9.5402
(((.(((((((((.((((....)))).))))))...))	chr19:1014093-1014326(-)$1	1	99	137	9.8394
.(((..(((((.(((((((...)))))))....)))))	chr14:75265156-75265420(+)$1	1	191	229	10.1614
((.((((.(((.((((((.....))))))))).)))))	chr4:104062952-104063166(-)$1	1	2	40	11.5965
(.((...((((.((((((.....)))..))).))))..	chr11:62285426-62285659(-)$1	1	122	160	13.3056
((...(((((((...(((.....))).)))))))...)	chr13:113209127-113209425(-)$1	1	37	75	15.8619
))))).((((((((((((.....))..)))))))))).	chr13:98671866-98672136(+)$1	1	160	198	12.2083
...(((((...((.((((.....)))).))...)))))	chr11:108593940-108594258(+)$1	1	136	174	10.4051
(((...(((.(...((((((...))))))....).)))	chr22:38891826-38892041(-)$1	1	111	149	11.3125
))((..(((.((...(((...)))...)).)))....)	chr17:35306289-35306565(+)$1	1	211	249	10.8698
((.((((..(((((((((.....)).))))))).))))	chr1:183596534-183596802(-)$1	1	105	143	12.5440
((((((((...(((.(((.....))))))..)))))))	chr12:49666495-49666738(+)$1	1	88	126	15.1416
.((..(((..(((.((((.....)).)).))).)))..	chr22:20800697-20800981(-)$1	1	120	158	12.1576
(.(((((((((....((((....)))))))))))))))	chr11:61089035-61089270(-)$1	1	185	223	11.0638
...((.((.((((((..(......)..)))))).)).)	chr12:56498355-56498640(+)$1	1	115	153	9.5260
((((((((.((((((((((....)))....))).).))	chr11:61557156-61557406(-)$1	1	126	164	11.5384
...((.(((.(...((((......))))..).))).))	chr1:228336383-228336642(+)$1	1	82	120	12.5972
.((((((((.((((..((.....))..))))...))).	chr2:71653837-71654099(+)$1	1	179	217	12.2612
((((.....(((((.(((.....))).)))))...)))	chr16:725956-726265(+)$1	1	89	127	12.7947
(((((((((((((.((((.....)))).))).))))))	chr5:36241725-36241980(-)$1	1	167	205	12.3172
((.((((((((....(((.....)))....)).)))).	chr7:151874477-151874713(-)$1	1	51	89	13.3602
(((.(((((.(...((((((...))))))...).))))	chr15:91422982-91423202(+)$1	1	53	91	10.7047
(((((.(((..(.(((((.....))))).)..))).))	chr2:48025680-48025944(+)$1	1	56	94	13.2464
((..(((...(((.((((.....)))).))).))).))	chr16:1821053-1821341(-)$1	1	1	39	14.7511
(((((((((.(((.((((((...)))..))).))))))	chr2:54197735-54197981(-)$1	1	91	129	12.6118
).).(((((.....((((.....))))....)))))))	chr4:13601208-13601464(-)$1	1	154	192	10.3936
.((((.(..(((((.(((...)))..))))).).))))	chr11:75115083-75115311(+)$1	1	33	71	9.7576
)))).(((((((((.(((.....))))))))))))...	chr1:12337783-12338029(+)$1	1	37	75	10.9495
.((.(((((((....(((...)))....))))))).))	chr12:49666689-49666938(+)$1	1	85	123	12.5543
(((..(((....(.(((((.....))))).)...))).	chr3:122785876-122786221(+)$1	1	254	292	13.2835
..(((((((((((.((((...))))....))))))...	chr8:145620028-145620296(-)$1	1	26	64	10.3457
(....(((((.(((.(((.....))).))))))))...	chr17:62499833-62500090(-)$1	1	128	166	12.5504
....((((((((((((((...)))))))))))))))))	chr11:62293172-62293416(-)$1	1	150	188	12.0952
(((.(...(((.((((((.....).))))).)))))))	chr19:19021694-19021908(-)$1	1	29	67	12.7019
(((((..((((((((.((.....)).)))))..)))..	chr11:62284828-62285098(-)$1	1	114	152	11.5439
(((((((((......(((......))))))))))))))	chr11:62300890-62301145(-)$1	1	197	235	11.5546
((...((.((...(((((.....)))))....)).)).	chr11:62285494-62285752(-)$1	1	134	172	11.8981
(((((((..(((...(((.....)))...)))....))	chr1:214819016-214819246(+)$1	1	125	163	15.5496
))).))((((..((.(((.....))).))..))))(((	chr8:144999527-144999784(-)$1	1	25	63	11.2951
.(.(((((((((((((((......))).)))))..)))	chr5:176737580-176737855(-)$1	1	138	176	11.4794

#PSSM
d : 0.20	f : 0.11	c : 0.09	e : 0.08	g : 0.08	[ : 0.06	: : 0.04	b : 0.04	= : 0.04	# : 0.04	" : 0.04	$ : 0.03	i : 0.01	F : 0.01	H : 0.01	a : 0.01	! : 0.01	
d : 0.24	e : 0.12	c : 0.11	f : 0.11	g : 0.06	b : 0.04	= : 0.04	# : 0.04	a : 0.03	[ : 0.03	i : 0.01	F : 0.01	: : 0.01	H : 0.01	" : 0.01	] : 0.01	! : 0.01	$ : 0.01	
d : 0.20	e : 0.12	[ : 0.09	f : 0.09	c : 0.06	b : 0.06	= : 0.04	g : 0.04	# : 0.04	" : 0.04	i : 0.03	: : 0.03	] : 0.01	F : 0.01	! : 0.01	a : 0.01	$ : 0.01	
d : 0.14	e : 0.12	b : 0.11	[ : 0.09	! : 0.08	# : 0.06	= : 0.06	g : 0.06	i : 0.04	f : 0.04	" : 0.04	c : 0.03	F : 0.01	: : 0.01	$ : 0.01	] : 0.01	
e : 0.16	b : 0.11	g : 0.09	! : 0.09	d : 0.09	= : 0.08	# : 0.06	" : 0.06	i : 0.04	f : 0.04	c : 0.04	[ : 0.03	$ : 0.01	: : 0.01	a : 0.01	
e : 0.16	d : 0.11	c : 0.11	g : 0.11	i : 0.06	= : 0.06	! : 0.06	[ : 0.06	# : 0.04	f : 0.04	b : 0.04	" : 0.04	: : 0.03	$ : 0.01	
c : 0.20	d : 0.12	e : 0.12	g : 0.11	= : 0.08	i : 0.06	# : 0.04	[ : 0.04	f : 0.04	! : 0.03	" : 0.03	b : 0.03	$ : 0.01	a : 0.01	
c : 0.20	e : 0.14	d : 0.11	g : 0.09	i : 0.08	= : 0.08	f : 0.06	[ : 0.04	! : 0.04	a : 0.03	b : 0.03	" : 0.03	$ : 0.01	
c : 0.17	d : 0.11	e : 0.11	g : 0.09	i : 0.08	! : 0.08	f : 0.08	[ : 0.06	= : 0.06	" : 0.04	b : 0.03	% : 0.01	$ : 0.01	# : 0.01	
c : 0.12	[ : 0.12	g : 0.11	e : 0.11	f : 0.09	i : 0.06	! : 0.06	d : 0.06	= : 0.04	" : 0.04	% : 0.03	a : 0.03	b : 0.03	$ : 0.01	# : 0.01	
c : 0.19	e : 0.11	g : 0.09	f : 0.08	i : 0.06	! : 0.06	d : 0.06	= : 0.04	[ : 0.04	$ : 0.04	" : 0.04	a : 0.04	% : 0.03	b : 0.03	# : 0.01	
c : 0.19	e : 0.09	" : 0.08	! : 0.06	g : 0.06	b : 0.06	f : 0.06	[ : 0.06	# : 0.06	i : 0.04	= : 0.04	$ : 0.04	a : 0.03	% : 0.03	d : 0.03	
c : 0.16	" : 0.14	f : 0.08	e : 0.08	g : 0.06	b : 0.06	[ : 0.06	a : 0.04	= : 0.04	$ : 0.04	# : 0.04	i : 0.03	% : 0.03	! : 0.03	x : 0.03	d : 0.01	
[ : 0.24	" : 0.14	e : 0.14	c : 0.08	= : 0.04	$ : 0.04	f : 0.04	# : 0.04	i : 0.03	% : 0.03	a : 0.03	x : 0.03	g : 0.03	d : 0.01	b : 0.01	
d : 0.22	e : 0.14	[ : 0.11	c : 0.09	" : 0.08	f : 0.06	= : 0.04	# : 0.04	x : 0.03	$ : 0.03	! : 0.03	g : 0.03	i : 0.01	b : 0.01	% : 0.01	
c : 0.37	d : 0.24	e : 0.11	= : 0.04	! : 0.04	f : 0.04	x : 0.03	g : 0.03	i : 0.01	" : 0.01	b : 0.01	[ : 0.01	
c : 0.37	d : 0.24	e : 0.11	b : 0.09	f : 0.04	= : 0.03	x : 0.03	r : 0.01	[ : 0.01	g : 0.01	! : 0.01	
c : 0.37	d : 0.24	e : 0.09	b : 0.09	f : 0.04	= : 0.03	x : 0.03	a : 0.03	r : 0.01	o : 0.01	g : 0.01	
n : 0.46	o : 0.16	l : 0.09	c : 0.08	r : 0.03	x : 0.03	e : 0.03	m : 0.03	f : 0.03	g : 0.01	d : 0.01	
n : 0.48	o : 0.16	l : 0.14	m : 0.06	c : 0.04	r : 0.03	x : 0.03	f : 0.03	
n : 0.48	l : 0.20	o : 0.17	m : 0.06	r : 0.03	x : 0.03	
n : 0.48	o : 0.17	l : 0.11	c : 0.06	m : 0.06	r : 0.03	x : 0.03	d : 0.01	= : 0.01	
n : 0.48	o : 0.17	c : 0.09	l : 0.06	r : 0.03	x : 0.03	d : 0.03	m : 0.03	e : 0.01	g : 0.01	= : 0.01	
c : 0.32	o : 0.16	d : 0.16	b : 0.09	e : 0.06	f : 0.04	r : 0.03	= : 0.03	x : 0.03	g : 0.01	n : 0.01	a : 0.01	
c : 0.29	d : 0.24	e : 0.09	b : 0.09	f : 0.04	r : 0.03	3 : 0.03	= : 0.03	x : 0.03	o : 0.01	g : 0.01	a : 0.01	2 : 0.01	4 : 0.01	] : 0.01	
c : 0.25	d : 0.22	e : 0.11	2 : 0.09	3 : 0.04	f : 0.04	] : 0.04	= : 0.03	x : 0.03	4 : 0.03	i : 0.01	o : 0.01	r : 0.01	g : 0.01	
d : 0.20	e : 0.14	] : 0.11	2 : 0.11	3 : 0.08	c : 0.06	4 : 0.06	f : 0.04	i : 0.03	= : 0.03	x : 0.03	g : 0.03	r : 0.01	b : 0.01	
e : 0.17	f : 0.11	d : 0.09	] : 0.09	c : 0.08	4 : 0.08	g : 0.06	= : 0.06	i : 0.04	3 : 0.04	2 : 0.04	b : 0.04	a : 0.03	
c : 0.17	e : 0.14	] : 0.12	f : 0.11	g : 0.09	4 : 0.08	b : 0.06	= : 0.06	i : 0.04	3 : 0.03	2 : 0.03	d : 0.01	
c : 0.22	e : 0.11	g : 0.09	4 : 0.09	f : 0.08	a : 0.06	= : 0.06	i : 0.04	b : 0.04	d : 0.04	] : 0.04	2 : 0.04	3 : 0.01	
c : 0.24	e : 0.11	g : 0.09	4 : 0.09	f : 0.08	= : 0.06	i : 0.04	a : 0.04	] : 0.04	d : 0.04	2 : 0.04	b : 0.03	3 : 0.03	
c : 0.16	] : 0.14	g : 0.09	e : 0.09	i : 0.08	= : 0.08	4 : 0.08	f : 0.08	3 : 0.06	d : 0.04	2 : 0.03	a : 0.01	b : 0.01	
c : 0.17	g : 0.09	f : 0.09	i : 0.08	e : 0.08	= : 0.08	4 : 0.08	d : 0.08	] : 0.06	3 : 0.06	2 : 0.04	a : 0.03	b : 0.01	
] : 0.16	c : 0.14	e : 0.09	i : 0.08	g : 0.08	= : 0.08	d : 0.08	3 : 0.08	4 : 0.06	2 : 0.04	b : 0.03	f : 0.03	a : 0.01	
c : 0.19	d : 0.19	e : 0.14	3 : 0.08	= : 0.08	i : 0.06	g : 0.04	b : 0.03	] : 0.03	4 : 0.03	a : 0.03	f : 0.03	: : 0.01	2 : 0.01	
d : 0.19	e : 0.16	c : 0.14	] : 0.11	3 : 0.08	= : 0.08	i : 0.04	g : 0.03	4 : 0.03	b : 0.03	D : 0.01	5 : 0.01	f : 0.01	: : 0.01	6 : 0.01	
d : 0.19	c : 0.16	e : 0.14	= : 0.09	3 : 0.08	b : 0.08	f : 0.04	i : 0.03	2 : 0.03	D : 0.03	5 : 0.01	4 : 0.01	] : 0.01	: : 0.01	6 : 0.01	g : 0.01	
d : 0.20	e : 0.11	c : 0.09	b : 0.09	] : 0.06	= : 0.06	2 : 0.04	f : 0.04	: : 0.04	3 : 0.04	i : 0.03	D : 0.03	g : 0.03	4 : 0.03	5 : 0.01	6 : 0.01	

#score	730.4206898738065
#seq	62
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_CDS_m2_run2.txt

#BEAR
ccc[ffffffooooooffffff]ccc:	chr6:168319318-168319583(+)$1	265	230	257	11.5143
bb!!gggggggnnnnnggggggg4444	chr1:24021082-24021331(+)$1	249	25	52	9.6972
d!!gggggggoooooogggggggdddd	chr16:50354064-50354403(-)$1	339	65	92	14.4332
===========nnnnn===========	chr16:23690413-23690655(+)$1	242	4	31	10.7112
ee"""bb!!aooooooa22bb333eee	chr5:134190712-134191044(+)$1	332	159	186	13.3896
$$$$ffffffooooooffffff333dd	chr19:1440078-1440329(+)$1	251	100	127	12.5686
eeee[bb[bboooooobb]bb]eeeee	chr17:7788164-7788485(+)$1	321	120	147	11.9843
b[bb!!acccooooooccc]a22bb]b	chr19:5593884-5594104(-)$1	220	138	165	12.5164
dd"""ccc[aooooooa]ccc333ddd	chr10:32306158-32306385(-)$1	227	50	77	14.4610
eeee$$$$$aooooooa4444eeeee]	chr17:7145466-7145736(-)$1	270	236	263	11.6926
e!!eeeee[aooooooa]eeeee22ee	chr1:24977798-24978007(+)$1	209	152	179	13.8862
dd[ccc!!bboooooobb22ccc22dd	chr19:6416730-6416961(-)$1	231	117	144	13.2336
d[ccc!!abboooooobb]a22cccdd	chr11:65729266-65729571(+)$1	305	224	251	13.1178
ee[gggggggooooooggggggg]eee	chr11:120319765-120320024(+)$1	259	171	198	14.7431
f[bb[a[cccooooooccc]a]bbfff	chr9:131023387-131023638(-)$1	251	165	192	12.4985
cc[gggggggooooooggggggg]ccc	chr9:33276386-33276654(+)$1	268	30	57	14.6728
dd[gggggggooooooggggggg]ddd	chr3:47730794-47731000(-)$1	206	74	101	14.6102
cc[==========lll==========3	chr11:65825758-65825978(+)$1	220	9	36	10.9766
d####eeeeeooooooeeeee22dddd	chr11:65743789-65744030(+)$1	241	28	55	13.6504
ggggggg[bboooooobb333gggggg	chr3:196666088-196666395(-)$1	307	168	195	13.7531
ddd!!eeeeeooooooeeeee]dddd]	chr21:45107295-45107519(+)$1	224	184	211	13.0625
ffff[eeeeeooooooeeeeeffffff	chr1:205687337-205687560(-)$1	223	158	185	12.5273
:iiiiiiiiiooooooiiiiiiiiiee	chr1:222833214-222833448(+)$1	234	150	177	13.4673
b!!gggggggooooooggggggg22bb	chr9:100777547-100777753(+)$1	206	78	105	14.1705
gg####ddddooooooddddggggggg	chr19:55649255-55649543(-)$1	288	70	97	13.0613
d[bb[eeeeeooooooeeeee]bbddd	chr12:123889333-123889623(+)$1	290	250	277	12.7778
eebb[eeeeeooooooeeeee22bb]e	chr1:186304108-186304322(-)$1	214	99	126	12.6580
b"""a[ddddoooooodddd]a4444b	chr20:32684501-32684711(-)$1	210	109	136	13.0239
ee####ddddoooooodddd4444eee	chr5:74066505-74066735(+)$1	230	146	173	13.1387
b!!ccc!!bboooooobb22ccc22bb	chr19:11098429-11098689(+)$1	260	5	32	12.8561
gggg[eeeeeooooooeeeeegggggg	chr21:33976479-33976695(-)$1	216	89	116	13.6541
cc[==========lll==========3	chr11:65825684-65825958(+)$1	274	83	110	10.9766
:a[gggggggooooooggggggg]a::	chr9:19376263-19376482(-)$1	219	179	206	12.0612
bffffff!!aooooooa22ffffff]b	chr17:4575311-4575543(-)$1	232	166	193	11.9549
ddccc[ddddooooooddddccc]ddd	chr22:50699731-50700022(-)$1	291	8	35	12.5150
[ccc[cccbboooooobb]ccc22ccc	chr2:27606133-27606417(-)$1	284	144	171	13.1277
eeeeeeeeeaooooooa]eeeee22ee	chr15:66795341-66795601(-)$1	260	25	52	13.1529
d!!ffffffaooooooa]ffffff444	chr5:71492188-71492446(+)$1	258	165	192	13.0864
""ccc[ddddoooooodddd]ccc22d	chrX:64956664-64956888(+)$1	224	108	135	12.2618
dddd[eeeeeooooooeeeee22dddd	chr1:67878714-67879047(-)$1	333	17	44	12.9547
dd[eeeeebboooooobb]eeeee]dd	chr4:13578945-13579215(-)$1	270	91	118	13.0144
!!dddd[cccooooooccc333dddd]	chrX:71495321-71495551(-)$1	230	107	134	12.8984
bb[dddd!!aooooooa]dddd]bbee	chr19:5694305-5694587(-)$1	282	73	100	12.1939
fffffeeeeeooooooeeeee]fffff	chr11:110128398-110128653(-)$1	255	126	153	12.4790
b####eeeeeooooooeeeee22bbee	chr1:40210977-40211259(+)$1	282	102	129	13.3844
ff[gggggggooooooggggggg333f	chr3:47730781-47730994(-)$1	213	68	95	14.6877
eeeee!!cccooooooccc4444eeee	chr5:71491845-71492111(+)$1	266	210	237	13.1085
ee!!gggggggnnnnnggggggg]eee	chr9:35724159-35724433(-)$1	274	102	129	10.1066
cc[gggggggooooooggggggg]ccc	chr9:33276350-33276586(+)$1	236	66	93	14.6728
==========oooooo==========:	chr17:72200223-72200430(+)$1	207	134	161	14.2122
ee[dddd[bboooooobb]dddd22ee	chr12:57927730-57927981(-)$1	251	144	171	12.5807
fffffeeeeeooooooeeeee22ffff	chr3:14239434-14239751(+)$1	317	121	148	12.4838
[dddd"""bboooooobb]dddd]ccc	chr1:110134580-110134870(+)$1	290	67	94	12.1608
biiiiiiiiiooooooiiiiiiiii>>	chr1:25553870-25554124(-)$1	254	30	57	13.7400
[a[gggggggooooooggggggg]agg	chr6:27115106-27115337(+)$1	231	100	127	14.6916
ggggggg[bboooooobb]gggggggH	chr1:52299586-52299807(-)$1	221	11	38	13.0815
ddddbb[cccooooooccc333bb]dd	chr11:129993407-129993650(+)$1	243	75	102	12.4012
"""bb!!cccooooooccc22bb]a]e	chr9:100693199-100693427(-)$1	228	90	117	12.8184

#otherMatches

#Seq PSSM
UUGUGAUGUUGUCAGAAACAUUCCAAA	chr6:168319318-168319583(+)$1	265	230	257	11.5143
UGAAGAUGACAAGGAAUGUUAUUGCUG	chr1:24021082-24021331(+)$1	249	25	52	9.6972
AUCAAACAGAAGUGUGUCUGUUUUCUU	chr16:50354064-50354403(-)$1	339	65	92	14.4332
GGGCCGCUUUUUGGGCAAGGGCGGCUU	chr16:23690413-23690655(+)$1	242	4	31	10.7112
GGGAACCACCAAAUCAGCAGGAUACCG	chr5:134190712-134191044(+)$1	332	159	186	13.3896
UCAUCCUACCCGAGAUGGUGGGCAGCA	chr19:1440078-1440329(+)$1	251	100	127	12.5686
GCGGGCCGGGCCACGACCGGGGCCGCG	chr17:7788164-7788485(+)$1	321	120	147	11.9843
CAGCAGGAGCAGCUGCGUUACGAGCAG	chr19:5593884-5594104(-)$1	220	138	165	12.5164
AGUCAUCCUGUUAAAUCUGGAAUCCUU	chr10:32306158-32306385(-)$1	227	50	77	14.4610
CUUGGAUCGGGACAGGCAGCGCAGGGA	chr17:7145466-7145736(-)$1	270	236	263	11.6926
AGAGAGAAAGCGCAGUCAUUCUCGAUC	chr1:24977798-24978007(+)$1	209	152	179	13.8862
GAGGCCGAGGAAGAGGCCAAGGCAAUU	chr19:6416730-6416961(-)$1	231	117	144	13.2336
gcgggagcgCAGCCAGGCAGAGCCCUC	chr11:65729266-65729571(+)$1	305	224	251	13.1178
UGAAGUGCUGCAUUUUCAGUACUCCAG	chr11:120319765-120320024(+)$1	259	171	198	14.7431
GGCUGAACUGAGGAACCAGAUGGGUAA	chr9:131023387-131023638(-)$1	251	165	192	12.4985
UAAAUGAGAGAAAAUCCUCUCAUAUAU	chr9:33276386-33276654(+)$1	268	30	57	14.6728
UUGGUUUUGCAGAUGAGCAGGAUGAAG	chr3:47730794-47731000(-)$1	206	74	101	14.6102
CACCUUCUUCCUUACAGAGGAAGAGGA	chr11:65825758-65825978(+)$1	220	9	36	10.9766
AUCACCCCAGAAACUGCUGGGUUUGCC	chr11:65743789-65744030(+)$1	241	28	55	13.6504
CUGAAGAACAAAUCUAUGAACUCUUCA	chr3:196666088-196666395(-)$1	307	168	195	13.7531
CUGCAGCCUGAAAAUCCAGGCCCAGGG	chr21:45107295-45107519(+)$1	224	184	211	13.0625
AUGAUGGUCUGGGGAGAGAUUUUAUUa	chr1:205687337-205687560(-)$1	223	158	185	12.5273
GUAAAGGGCAACAAUCUGUUUUUUGAU	chr1:222833214-222833448(+)$1	234	150	177	13.4673
CAAUUUUUGUUACUGUACagaggagga	chr9:100777547-100777753(+)$1	206	78	105	14.1705
GUCCAUGAGGUUAACCCCUUACUUCCC	chr19:55649255-55649543(-)$1	288	70	97	13.0613
UACAUGUACUAUUUUCAGUAUCUGAGC	chr12:123889333-123889623(+)$1	290	250	277	12.7778
UCCAGCUUCUGGUGAAAGAGGAAUGUG	chr1:186304108-186304322(-)$1	214	99	126	12.6580
CGAGUGUUCAACAUCAUGAGGGAAAAG	chr20:32684501-32684711(-)$1	210	109	136	13.0239
GUGUAAUGACCGAAAUGUUAGUUGACU	chr5:74066505-74066735(+)$1	230	146	173	13.1387
UCCCACCCGCCGCCUCGCCCGUGAUGC	chr19:11098429-11098689(+)$1	260	5	32	12.8561
UUUCUGCUUGCAGAAACAAGUGGAAGC	chr21:33976479-33976695(-)$1	216	89	116	13.6541
CACCUUCUUCCUUACAGAGGAAGAGGA	chr11:65825684-65825958(+)$1	274	83	110	10.9766
CAGUCAGAAAUAAGAUUUUUUGAGUAA	chr9:19376263-19376482(-)$1	219	179	206	12.0612
GGGAGGUAGAAGAAGGUGCACCUCCAC	chr17:4575311-4575543(-)$1	232	166	193	11.9549
CGCCGAGGGAGCCCCGUCCCCGGUCGU	chr22:50699731-50700022(-)$1	291	8	35	12.5150
UGGGCGAGUCAACGGGGGCCUCAACCU	chr2:27606133-27606417(-)$1	284	144	171	13.1277
GCUACCAUGCAUAAUAGUCAUGGGUUG	chr15:66795341-66795601(-)$1	260	25	52	13.1529
GCCGAGGAGCAGUAUGGAUUCCUCACC	chr5:71492188-71492446(+)$1	258	165	192	13.0864
agaaggCUCAGCAAGGUGAGGCUUGGA	chrX:64956664-64956888(+)$1	224	108	135	12.2618
AGUUCUGUCUUAAUGUAGACACUAGCU	chr1:67878714-67879047(-)$1	333	17	44	12.9547
UUAUUGCUUCUAGGAUGAUGGUGAAGA	chr4:13578945-13579215(-)$1	270	91	118	13.0144
AAAUCGAUGGCAAGGUCCGAACUGAUA	chrX:71495321-71495551(-)$1	230	107	134	12.8984
UGGAGGUGACGCCCGAGAACCUGCAGG	chr19:5694305-5694587(-)$1	282	73	100	12.1939
UGCUUUGGGUCUGAAUAUUUAUGAGCA	chr11:110128398-110128653(-)$1	255	126	153	12.4790
CCUCAGGUGUACAUGGACAUCAAGAUU	chr1:40210977-40211259(+)$1	282	102	129	13.3844
UUGGUUUUGCAGAUGAGCAGGAUGAAG	chr3:47730781-47730994(-)$1	213	68	95	14.6877
GGAGGAACACGUAUGUGUGAGCGCCUC	chr5:71491845-71492111(+)$1	266	210	237	13.1085
UGAACUGGCUGGACCAUGGUCGGACAC	chr9:35724159-35724433(-)$1	274	102	129	10.1066
UAAAUGAGAGAAAAUCCUCUCAUAUAU	chr9:33276350-33276586(+)$1	236	66	93	14.6728
GAGCGGUGCCUAGCCUGGCACCGCUCC	chr17:72200223-72200430(+)$1	207	134	161	14.2122
GGAUCAGGGGGAAAAACCACUGGGACC	chr12:57927730-57927981(-)$1	251	144	171	12.5807
AAUGCUCUUUGUCCGGGGAGAUGGCGU	chr3:14239434-14239751(+)$1	317	121	148	12.4838
CUGGGUGUCCGUUUUAGGUUCCAAUAC	chr1:110134580-110134870(+)$1	290	67	94	12.1608
AGAUUUUUCUCUCAAUAGGAAGGUCCA	chr1:25553870-25554124(-)$1	254	30	57	13.7400
AGUCACCAUCGCGCAGGGUGGUGUCUU	chr6:27115106-27115337(+)$1	231	100	127	14.6916
UGCCUUCCUGAAGAAGCAUGGGGGUAG	chr1:52299586-52299807(-)$1	221	11	38	13.0815
GACACUCUGACCAUUUUCACACAGCUG	chr11:129993407-129993650(+)$1	243	75	102	12.4012
AUAACCAAAGUAUUUCCUUCAGUAGCC	chr9:100693199-100693427(-)$1	228	90	117	12.8184

#DB
(((.((((((......)))))).))).	chr6:168319318-168319583(+)$1	1	230	257	11.5143
((..(((((((.....)))))))....	chr1:24021082-24021331(+)$1	1	25	52	9.6972
(..(((((((......)))))))))))	chr16:50354064-50354403(-)$1	1	65	92	14.4332
(((((((((((.....)))))))))))	chr16:23690413-23690655(+)$1	1	4	31	10.7112
((...((..(......)..))...)))	chr5:134190712-134191044(+)$1	1	159	186	13.3896
....((((((......))))))...))	chr19:1440078-1440329(+)$1	1	100	127	12.5686
((((.((.((......)).)).)))))	chr17:7788164-7788485(+)$1	1	120	147	11.9843
(.((..((((......))).)..)).)	chr19:5593884-5594104(-)$1	1	138	165	12.5164
((...(((.(......).)))...)))	chr10:32306158-32306385(-)$1	1	50	77	14.4610
((((.....(......)....))))).	chr17:7145466-7145736(-)$1	1	236	263	11.6926
(..(((((.(......).)))))..))	chr1:24977798-24978007(+)$1	1	152	179	13.8862
((.(((..((......))..)))..))	chr19:6416730-6416961(-)$1	1	117	144	13.2336
(.(((..(((......)).)..)))))	chr11:65729266-65729571(+)$1	1	224	251	13.1178
((.(((((((......))))))).)))	chr11:120319765-120320024(+)$1	1	171	198	14.7431
(.((.(.(((......))).).)))))	chr9:131023387-131023638(-)$1	1	165	192	12.4985
((.(((((((......))))))).)))	chr9:33276386-33276654(+)$1	1	30	57	14.6728
((.(((((((......))))))).)))	chr3:47730794-47731000(-)$1	1	74	101	14.6102
((.((((((((((...)))))))))).	chr11:65825758-65825978(+)$1	1	9	36	10.9766
(....(((((......)))))..))))	chr11:65743789-65744030(+)$1	1	28	55	13.6504
(((((((.((......))...))))))	chr3:196666088-196666395(-)$1	1	168	195	13.7531
(((..(((((......))))).)))).	chr21:45107295-45107519(+)$1	1	184	211	13.0625
((((.(((((......)))))))))))	chr1:205687337-205687560(-)$1	1	158	185	12.5273
.(((((((((......)))))))))((	chr1:222833214-222833448(+)$1	1	150	177	13.4673
(..(((((((......)))))))..))	chr9:100777547-100777753(+)$1	1	78	105	14.1705
((....((((......)))))))))))	chr19:55649255-55649543(-)$1	1	70	97	13.0613
(.((.(((((......))))).)))))	chr12:123889333-123889623(+)$1	1	250	277	12.7778
((((.(((((......)))))..)).)	chr1:186304108-186304322(-)$1	1	99	126	12.6580
(...(.((((......)))).)....)	chr20:32684501-32684711(-)$1	1	109	136	13.0239
((....((((......))))....)))	chr5:74066505-74066735(+)$1	1	146	173	13.1387
(..(((..((......))..)))..))	chr19:11098429-11098689(+)$1	1	5	32	12.8561
((((.(((((......)))))))))))	chr21:33976479-33976695(-)$1	1	89	116	13.6541
((.((((((((((...)))))))))).	chr11:65825684-65825958(+)$1	1	83	110	10.9766
.(.(((((((......))))))).)..	chr9:19376263-19376482(-)$1	1	179	206	12.0612
(((((((..(......)..)))))).)	chr17:4575311-4575543(-)$1	1	166	193	11.9549
(((((.((((......))))))).)))	chr22:50699731-50700022(-)$1	1	8	35	12.5150
.(((.(((((......)).)))..)))	chr2:27606133-27606417(-)$1	1	144	171	13.1277
((((((((((......).)))))..))	chr15:66795341-66795601(-)$1	1	25	52	13.1529
(..(((((((......).))))))...	chr5:71492188-71492446(+)$1	1	165	192	13.0864
..(((.((((......)))).)))..)	chrX:64956664-64956888(+)$1	1	108	135	12.2618
((((.(((((......)))))..))))	chr1:67878714-67879047(-)$1	1	17	44	12.9547
((.(((((((......)).))))).))	chr4:13578945-13579215(-)$1	1	91	118	13.0144
..((((.(((......)))...)))).	chrX:71495321-71495551(-)$1	1	107	134	12.8984
((.((((..(......).)))).))))	chr19:5694305-5694587(-)$1	1	73	100	12.1939
((((((((((......))))).)))))	chr11:110128398-110128653(-)$1	1	126	153	12.4790
(....(((((......)))))..))))	chr1:40210977-40211259(+)$1	1	102	129	13.3844
((.(((((((......)))))))...)	chr3:47730781-47730994(-)$1	1	68	95	14.6877
(((((..(((......)))....))))	chr5:71491845-71492111(+)$1	1	210	237	13.1085
((..(((((((.....))))))).)))	chr9:35724159-35724433(-)$1	1	102	129	10.1066
((.(((((((......))))))).)))	chr9:33276350-33276586(+)$1	1	66	93	14.6728
((((((((((......)))))))))).	chr17:72200223-72200430(+)$1	1	134	161	14.2122
((.((((.((......)).))))..))	chr12:57927730-57927981(-)$1	1	144	171	12.5807
((((((((((......)))))..))))	chr3:14239434-14239751(+)$1	1	121	148	12.4838
.((((...((......)).)))).)))	chr1:110134580-110134870(+)$1	1	67	94	12.1608
((((((((((......)))))))))..	chr1:25553870-25554124(-)$1	1	30	57	13.7400
.(.(((((((......))))))).)))	chr6:27115106-27115337(+)$1	1	100	127	14.6916
(((((((.((......)).)))))))(	chr1:52299586-52299807(-)$1	1	11	38	13.0815
((((((.(((......)))...)).))	chr11:129993407-129993650(+)$1	1	75	102	12.4012
...((..(((......)))..)).).)	chr9:100693199-100693427(-)$1	1	90	117	12.8184

#PSSM
d : 0.22	e : 0.18	b : 0.15	c : 0.08	f : 0.08	g : 0.06	[ : 0.05	= : 0.03	: : 0.03	" : 0.03	$ : 0.01	! : 0.01	
e : 0.17	d : 0.15	c : 0.10	! : 0.10	f : 0.08	[ : 0.06	g : 0.06	" : 0.05	b : 0.03	= : 0.03	# : 0.03	i : 0.03	a : 0.03	$ : 0.01	
[ : 0.22	! : 0.12	c : 0.08	d : 0.08	" : 0.06	e : 0.06	b : 0.06	# : 0.06	f : 0.06	g : 0.05	= : 0.03	i : 0.03	$ : 0.01	
g : 0.20	e : 0.10	c : 0.10	d : 0.10	b : 0.08	f : 0.08	= : 0.06	# : 0.06	! : 0.05	" : 0.05	i : 0.03	[ : 0.01	$ : 0.01	
g : 0.22	[ : 0.13	f : 0.10	c : 0.08	= : 0.06	e : 0.06	# : 0.06	d : 0.06	" : 0.03	! : 0.03	i : 0.03	b : 0.03	$ : 0.01	a : 0.01	
g : 0.22	e : 0.22	f : 0.06	= : 0.06	! : 0.06	c : 0.06	b : 0.05	[ : 0.05	d : 0.05	i : 0.03	# : 0.03	$ : 0.01	a : 0.01	" : 0.01	
g : 0.22	e : 0.22	d : 0.12	! : 0.08	f : 0.06	= : 0.06	[ : 0.05	b : 0.03	c : 0.03	i : 0.03	a : 0.01	$ : 0.01	" : 0.01	
e : 0.22	g : 0.18	c : 0.13	! : 0.08	d : 0.08	= : 0.06	[ : 0.06	f : 0.05	i : 0.03	$ : 0.01	a : 0.01	" : 0.01	
g : 0.18	e : 0.18	b : 0.17	c : 0.10	d : 0.08	= : 0.06	f : 0.05	! : 0.05	[ : 0.03	i : 0.03	$ : 0.01	
g : 0.18	b : 0.17	e : 0.17	a : 0.13	c : 0.10	d : 0.08	= : 0.06	f : 0.03	i : 0.03	
o : 0.91	= : 0.05	g : 0.03	
o : 0.91	n : 0.05	= : 0.03	
o : 0.91	n : 0.05	= : 0.03	
o : 0.91	n : 0.05	l : 0.03	
o : 0.91	n : 0.05	l : 0.03	
o : 0.91	n : 0.05	l : 0.03	
g : 0.18	b : 0.17	e : 0.17	a : 0.13	c : 0.10	d : 0.08	= : 0.06	f : 0.03	i : 0.03	
g : 0.18	b : 0.17	e : 0.17	c : 0.10	] : 0.08	d : 0.08	= : 0.06	f : 0.03	2 : 0.03	i : 0.03	4 : 0.01	
e : 0.20	g : 0.18	] : 0.12	c : 0.12	d : 0.10	= : 0.06	2 : 0.06	f : 0.05	i : 0.03	4 : 0.01	3 : 0.01	
e : 0.22	g : 0.20	d : 0.13	f : 0.06	= : 0.06	2 : 0.05	3 : 0.05	b : 0.03	] : 0.03	c : 0.03	4 : 0.03	i : 0.03	a : 0.01	
g : 0.22	e : 0.22	c : 0.08	f : 0.06	= : 0.06	4 : 0.05	3 : 0.05	d : 0.05	b : 0.03	a : 0.03	2 : 0.03	i : 0.03	] : 0.03	
g : 0.25	2 : 0.12	f : 0.08	] : 0.08	c : 0.08	= : 0.06	3 : 0.06	e : 0.06	d : 0.05	i : 0.03	4 : 0.03	a : 0.01	b : 0.01	
g : 0.25	2 : 0.12	e : 0.08	c : 0.08	= : 0.06	b : 0.06	d : 0.06	f : 0.06	3 : 0.05	4 : 0.05	] : 0.03	i : 0.03	
] : 0.17	b : 0.12	2 : 0.12	d : 0.08	f : 0.08	= : 0.06	3 : 0.06	e : 0.06	g : 0.06	c : 0.05	4 : 0.05	i : 0.03	
d : 0.15	e : 0.12	2 : 0.12	c : 0.10	f : 0.08	= : 0.06	b : 0.06	g : 0.06	4 : 0.05	a : 0.05	3 : 0.03	i : 0.03	] : 0.03	
d : 0.24	e : 0.22	c : 0.08	g : 0.08	= : 0.06	] : 0.06	f : 0.06	4 : 0.05	b : 0.03	: : 0.01	2 : 0.01	3 : 0.01	> : 0.01	
e : 0.24	d : 0.22	b : 0.08	f : 0.08	c : 0.06	g : 0.06	: : 0.05	] : 0.05	4 : 0.03	3 : 0.03	= : 0.01	> : 0.01	H : 0.01	

#score	749.3185329442001
#seq	58
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_UTR_m1_run2.txt

#BEAR
ddd[ccc[==========lll==========ccc]dd	chr7:34968410-34968682(-)$1	272	96	133	16.7014
bb]================22===========eeeee	chr11:94964065-94964366(-)$1	301	113	150	13.8603
dd####a[a!!acccooooooccc]a22a]a22dddd	chr3:48481753-48481968(+)$1	215	86	123	14.0576
iiiiiiiii"""eeeeennnnneeeee4444iiiiii	chr6:31765178-31765418(-)$1	240	139	176	13.8274
ccc[ffffff"""cccooooooccc22ffffff]ccc	chr12:110927942-110928233(+)$1	291	135	172	13.6847
ccc[iiiiiiiii[cccmmmmccc]iiiiiiiiiccc	chr9:139317890-139318130(+)$1	240	71	108	17.6925
"""=============qqqqqqqq=============	chr17:4848909-4849189(-)$1	280	199	236	14.3454
hhh"""ccc[ccc[cccmmmmccc]ccc]ccc333hh	chr17:42284330-42284557(-)$1	227	57	94	14.5901
e####ccc!!gggggggooooooggggggg4444ccc	chr6:17615450-17615684(-)$1	234	68	105	14.7137
iiiiiiiii[bb[ddddoooooodddd]bb333iiii	chr11:64894794-64895039(-)$1	245	89	126	14.3606
iiiiiiiii[gggggggmmmmgggggggiiiiiiiii	chr19:45666155-45666397(-)$1	242	115	152	16.4125
::bb"""ccc####cccmmmmccc333ccc333bb==	chr9:114697263-114697517(+)$1	254	36	73	13.2439
eee==========cccnnnnnccc]==========]e	chr19:49464911-49465139(+)$1	228	106	143	17.5652
:ffffff[iiiiiiiiimmmmiiiiiiiii]ffffff	chr17:38078030-38078317(-)$1	287	2	39	12.9995
iiiiiiiii[bb[ddddoooooodddd]bb333iiii	chr11:64894839-64895101(-)$1	262	151	188	14.3606
eeeee==========oooooo==========333eee	chr8:130853664-130853962(-)$1	298	156	193	17.4872
cdddd==============nnnnn=============	chr7:129710476-129710753(+)$1	277	239	276	15.2381
ccc[ffffff"""cccooooooccc22ffffff]ccc	chr12:110927870-110928142(+)$1	272	207	244	13.6847
==============[bbmmmmbb]=============	chr6:34555363-34555621(-)$1	258	30	67	17.9208
dddd[==========bbmmmmbb4444==========	chr14:75520199-75520459(-)$1	260	75	112	16.8401
dd[ggggggg[a[ddddmmmmdddda]gggggggddd	chr6:37142862-37143098(+)$1	236	100	137	12.8560
cca[===========ppppppp===========]a]c	chr17:79876081-79876370(-)$1	289	169	206	13.4000
eee[bb[a[iiiiiiiiillliiiiiiiii]a]bb]e	chr7:6064131-6064359(-)$1	228	113	150	14.8659
ccc[iiiiiiiii[cccmmmmccc]iiiiiiiiiccc	chr9:139317766-139318025(+)$1	259	195	232	17.6925
b[ggggggg$$$$$cccooooooccc22ggggggg]b	chr3:50367768-50368055(-)$1	287	117	154	14.0416
dd!!ggggggg[cccooooooccc]ggggggg22ddd	chr7:73536538-73536798(+)$1	260	132	169	14.9854
ggggg"""ccc[aooooooa]ccc333gggggggggg	chr15:23048563-23048811(-)$1	248	109	146	13.6064
ggggg]a==========mmmm==========:::eee	chr21:46189073-46189379(-)$1	306	207	244	13.7898
==========!!cccooooooccc22===========	chr16:85706934-85707192(+)$1	258	173	210	18.5546
::==========!!accclllccc]a22=========	chr11:64014138-64014443(-)$1	305	127	164	15.9110
eee[dddd"""ccccccmmmmccc]cccdddd333ee	chr11:64846068-64846321(-)$1	253	119	156	13.2927
ddd!!============mmmm============333d	chr11:118915174-118915397(-)$1	223	122	159	18.5559
eccc]ccca[gggggggmmmmggggggga:iiiiiii	chr9:127998507-127998731(-)$1	224	146	183	13.2422
iiiiiiii"""ffffffmmmmffffff333iiiiiii	chr6:31605266-31605496(+)$1	230	171	208	14.6993
ggggggg"""a!!ddddmmmmdddd22a22ggggggg	chr5:179248459-179248763(+)$1	304	152	189	13.2581
=========="""cccnnnnnccc4444=========	chr7:98993962-98994237(-)$1	275	68	105	17.9720
eeee"""iiiiiiiiinnnnniiiiiiiii333eeee	chr17:34053271-34053519(+)$1	248	97	134	14.8406
ccc===========[bbmmmmbb22===========2	chr1:32670688-32670986(+)$1	298	9	46	16.9239
dda[==============nnnnn==============	chr19:1258708-1258967(+)$1	259	32	69	17.4991
ggg[ccc!!iiiiiiiiinnnnniiiiiiiii]ccc]	chr8:145067357-145067650(+)$1	293	148	185	14.7677
gggg!!ggggggg[bboooooobb]ggggggg22ggg	chr2:98264431-98264680(+)$1	249	48	85	14.6244
=========$$$$$cccmmmmccc]==========::	chrX:141290418-141290743(-)$1	325	184	221	15.8074
[iiiiiiiii####accclllccc]a4444iiiiiii	chr11:9610971-9611215(+)$1	244	72	109	17.0535
gggggg####ffffffooooooffffff4444ggggg	chr8:101734040-101734248(-)$1	208	60	97	12.9752
ccc[ccc!!gggggggoooooogggggggccc]ccc:	chr20:60709746-60709986(+)$1	240	34	71	13.8348
ff[bbccc!!ccc[cccmmmmccc]ccc22ccc333b	chr17:76109078-76109394(-)$1	316	217	254	13.2628
eee[bb[a[iiiiiiiiillliiiiiiiii]a]bb]e	chr7:6064159-6064393(-)$1	234	147	184	14.8659
ddd[=============nnnnn=============dd	chr1:44170866-44171113(+)$1	247	124	161	17.5942
!!hhhhhhhh"""acccmmmmccc4444a333hhhhh	chr9:125581719-125582019(-)$1	300	117	154	13.6598
dd"""bb[a[bb[cccaooooooa]cccbba]bb333	chr2:44545931-44546215(-)$1	284	38	75	13.2259
gg"""ccc[bb####bbmmmmbb333bb]ccc4444g	chr5:34915812-34916079(+)$1	267	26	63	13.2202
ccc!!eeeee####cccmmmmccc4444eeeee22cc	chr1:150237734-150238013(-)$1	279	54	91	13.4401
iiiiii[bb"""cccooooooccc333bb]iiiiiii	chr11:60658239-60658533(-)$1	294	217	254	16.5672

#otherMatches

#Seq PSSM
UGAUAUUGCAUAGGAGUAUUGUAUUUUUAUGAAUUUU	chr7:34968410-34968682(-)$1	272	96	133	16.7014
GAGGAgcagccgccgccgucuccgccgucgcuggggc	chr11:94964065-94964366(-)$1	301	113	150	13.8603
CCAAGAAGCAGGCCAAGGAGAUGGACgaggugagggc	chr3:48481753-48481968(+)$1	215	86	123	14.0576
CUCUGGAGAUGGUAGGAGAGUUUCCUAGGUCUUUCCA	chr6:31765178-31765418(-)$1	240	139	176	13.8274
UGUAAUUGGUCUGAUGUAGUUCCAUGUACCAAUGAUA	chr12:110927942-110928233(+)$1	291	135	172	13.6847
GCCACGAGGAGGGCGGUCGGUGCUUCCCUCCUCGGGC	chr9:139317890-139318130(+)$1	240	71	108	17.6925
UUUUGGGGUUUUUUUUUUCUGAAUAAAAAAGAUUCUA	chr17:4848909-4849189(-)$1	280	199	236	14.3454
ACUUUCUUUCUUUCUUUAAAAAAAAAAAAAAAUACGG	chr17:42284330-42284557(-)$1	227	57	94	14.5901
CUUGAAAUUUGAAUUUUGUGUUAGAGAUUUUUUUGUU	chr6:17615450-17615684(-)$1	234	68	105	14.7137
GGUCUUUCCAGUUUAGAAAAGGCUCUGUGCCAAGGAG	chr11:64894794-64895039(-)$1	245	89	126	14.3606
GGGGUCCCAGCUGCGGUCAGGACUGUGGUGGGAUUCC	chr19:45666155-45666397(-)$1	242	115	152	16.4125
CUCAGUAUGGACAGUGUAACAACAAAACCAAAAUGGC	chr9:114697263-114697517(+)$1	254	36	73	13.2439
GUGGUCUUGAGGGGGUAAUAAACCUCCUUCGGGACAC	chr19:49464911-49465139(+)$1	228	106	143	17.5652
GGGAUGGGUCUUUGCCUUUCUGGGUAGGGAGCUGUCU	chr17:38078030-38078317(-)$1	287	2	39	12.9995
GGUCUUUCCAGUUUAGAAAAGGCUCUGUGCCAAGGAG	chr11:64894839-64895101(-)$1	262	151	188	14.3606
UGUGAUGUGUGCGUAGAAUAUUACGUAUGCAUGUUCA	chr8:130853664-130853962(-)$1	298	156	193	17.4872
CCCUGGCUUGCUUUUCCUUGGGAGGAGGAAAGGCAGG	chr7:129710476-129710753(+)$1	277	239	276	15.2381
UGUAAUUGGUCUGAUGUAGUUCCAUGUACCAAUGAUA	chr12:110927870-110928142(+)$1	272	207	244	13.6847
GGUGUGUGUGUGUGGAUGGAUGUGCACGUGUGCAUGC	chr6:34555363-34555621(-)$1	258	30	67	17.9208
UCUCUCUUUUUACCCCCCUUAGGCUGAGGGUAAAAAG	chr14:75520199-75520459(-)$1	260	75	112	16.8401
UACUUACCCAGGUGGGUCCCGGCUCUGUGGGUGAUGG	chr6:37142862-37143098(+)$1	236	100	137	12.8560
UGUGAUAUAUAAGGUUUUCUUUAUUUUGUAUAUGAUC	chr17:79876081-79876370(-)$1	289	169	206	13.4000
GGUAUAGUUGGUACAAUGCUUCGUUGUAUUUAGUAAG	chr7:6064131-6064359(-)$1	228	113	150	14.8659
GCCACGAGGAGGGCGGUCGGUGCUUCCCUCCUCGGGC	chr9:139317766-139318025(+)$1	259	195	232	17.6925
GUGGGGCCUGUGGAAUGAGUGUGCAUGGAGGCCCUCC	chr3:50367768-50368055(-)$1	287	117	154	14.0416
AUCUAGGAAGUAUUAAAACUGUGAAGCUUUCUCAGUG	chr7:73536538-73536798(+)$1	260	132	169	14.9854
UGGUGGAUAGCGGGGAGCAUGGCUCAGCACCAGAGCA	chr15:23048563-23048811(-)$1	248	109	146	13.6064
AAGUAGACGGGGUCUGUGGGUGCAGGCCCUGGAGGGG	chr21:46189073-46189379(-)$1	306	207	244	13.7898
UUUAGUGUUUGUACUGCUGCUGGUCAGGACAUUAAAA	chr16:85706934-85707192(+)$1	258	173	210	18.5546
AAGCCCGGGGGCUCCGCAUGCUGCAGCUgcccccggg	chr11:64014138-64014443(-)$1	305	127	164	15.9110
CUGCUUGGAAAUAGGCCCAGGGGCUCUGCCAGCCUCG	chr11:64846068-64846321(-)$1	253	119	156	13.2927
AUGAAGGAGGAGGGUCAGGGCUGGCCUUCCUCUGUGC	chr11:118915174-118915397(-)$1	223	122	159	18.5559
UGCAUCUGGUGUAGGAAGUUUUUUCUACCAUAAGUGA	chr9:127998507-127998731(-)$1	224	146	183	13.2422
GGGAGGGGUUCUGGGGCUGGGGCCUCACUUCCCCUCC	chr6:31605266-31605496(+)$1	230	171	208	14.6993
CGCGGGUAAACAAGCGCGGGGGUGCGGGGGACUCGCG	chr5:179248459-179248763(+)$1	304	152	189	13.2581
UCUUCAUCUUGGCACAGAAAUUGUUUGGGGGAUGGGG	chr7:98993962-98994237(-)$1	275	68	105	17.9720
GAGGGUGGGGGUUGGGGGAAGCUUGACCUUGUGUCUU	chr17:34053271-34053519(+)$1	248	97	134	14.8406
CCCUUUGCACAGGUGAGGGAACUAAACCUGUGCAAGA	chr1:32670688-32670986(+)$1	298	9	46	16.9239
CCAGAGGGUAGAGCUCAAGGAUUUUGGGUUUUGUUUU	chr19:1258708-1258967(+)$1	259	32	69	17.4991
GCAUGUUUCAGGGGAGGGGGAAGCCUUCCUCUCAAUU	chr8:145067357-145067650(+)$1	293	148	185	14.7677
UCGUCUGGUUUUGGCUGCACAAAGGCGAGGCCCAGCG	chr2:98264431-98264680(+)$1	249	48	85	14.6244
CUUUGCAUUUCUGUCCCAUAUGGGUGAUGUAGAGAUU	chrX:141290418-141290743(-)$1	325	184	221	15.8074
UUUGUGUAUAUAAACCGAUCUUCGUGAUACUGUACAU	chr11:9610971-9611215(+)$1	244	72	109	17.0535
AAAAAUCCGCGUCUCCCCCGCCGGAGACUUUUAUUUU	chr8:101734040-101734248(-)$1	208	60	97	12.9752
CCACCCUGAUGGCAUCCACAGUGAUGUCAAGGUUGGG	chr20:60709746-60709986(+)$1	240	34	71	13.8348
UUGCCUCCCAGUGACCCUGCUGGGACACCAGGACAAG	chr17:76109078-76109394(-)$1	316	217	254	13.2628
GGUAUAGUUGGUACAAUGCUUCGUUGUAUUUAGUAAG	chr7:6064159-6064393(-)$1	234	147	184	14.8659
GGUUAAACAGGUUUUUGCUCCUCAAGAAUUUGUUUGC	chr1:44170866-44171113(+)$1	247	124	161	17.5942
AGAUUUUUUUUUUCCCCACCAGGGUCUUGUUUAAAGG	chr9:125581719-125582019(-)$1	300	117	154	13.6598
auguuucagugccacucacauaagaagugcccgguaa	chr2:44545931-44546215(-)$1	284	38	75	13.2259
GCAAGAUGGCGGCAACCAAGAGGAAACGGCGUGGAGG	chr5:34915812-34916079(+)$1	267	26	63	13.2202
UAGGGAAGGAGGGGAGAUUUUUUUGUAGUUUUUAAUU	chr1:150237734-150238013(-)$1	279	54	91	13.4401
GUUCCUGUGAGACAGGAGAGGCUGAGCCAAGGGAACU	chr11:60658239-60658533(-)$1	294	217	254	16.5672

#DB
(((.(((.((((((((((...))))))))))))).))	chr7:34968410-34968682(-)$1	1	96	133	16.7014
)).))))))))))))))))..)))))))))))(((((	chr11:94964065-94964366(-)$1	1	113	150	13.8603
((....(.(..((((......))).)..).)..))))	chr3:48481753-48481968(+)$1	1	86	123	14.0576
(((((((((...(((((.....)))))....))))))	chr6:31765178-31765418(-)$1	1	139	176	13.8274
(((.((((((...(((......)))..)))))).)))	chr12:110927942-110928233(+)$1	1	135	172	13.6847
(((.(((((((((.(((....))).))))))))))))	chr9:139317890-139318130(+)$1	1	71	108	17.6925
...(((((((((((((........)))))))))))))	chr17:4848909-4849189(-)$1	1	199	236	14.3454
(((...(((.(((.(((....))).))).)))...))	chr17:42284330-42284557(-)$1	1	57	94	14.5901
(....(((..(((((((......)))))))....)))	chr6:17615450-17615684(-)$1	1	68	105	14.7137
(((((((((.((.((((......)))).))...))))	chr11:64894794-64895039(-)$1	1	89	126	14.3606
(((((((((.(((((((....))))))))))))))))	chr19:45666155-45666397(-)$1	1	115	152	16.4125
..((...(((....(((....)))...)))...))((	chr9:114697263-114697517(+)$1	1	36	73	13.2439
((((((((((((((((.....))).)))))))))).)	chr19:49464911-49465139(+)$1	1	106	143	17.5652
.((((((.(((((((((....))))))))).))))))	chr17:38078030-38078317(-)$1	1	2	39	12.9995
(((((((((.((.((((......)))).))...))))	chr11:64894839-64895101(-)$1	1	151	188	14.3606
(((((((((((((((......))))))))))...)))	chr8:130853664-130853962(-)$1	1	156	193	17.4872
)))))((((((((((((((.....)))))))))))))	chr7:129710476-129710753(+)$1	1	239	276	15.2381
(((.((((((...(((......)))..)))))).)))	chr12:110927870-110928142(+)$1	1	207	244	13.6847
((((((((((((((.((....)).)))))))))))))	chr6:34555363-34555621(-)$1	1	30	67	17.9208
((((.((((((((((((....))....))))))))))	chr14:75520199-75520459(-)$1	1	75	112	16.8401
((.(((((((.(.((((....))))).))))))))))	chr6:37142862-37143098(+)$1	1	100	137	12.8560
(((.(((((((((((.......))))))))))).).)	chr17:79876081-79876370(-)$1	1	169	206	13.4000
(((.((.(.(((((((((...))))))))).).)).)	chr7:6064131-6064359(-)$1	1	113	150	14.8659
(((.(((((((((.(((....))).))))))))))))	chr9:139317766-139318025(+)$1	1	195	232	17.6925
(.(((((((.....(((......)))..))))))).)	chr3:50367768-50368055(-)$1	1	117	154	14.0416
((..(((((((.(((......))).)))))))..)))	chr7:73536538-73536798(+)$1	1	132	169	14.9854
(((((...(((.(......).)))...)))))))(((	chr15:23048563-23048811(-)$1	1	109	146	13.6064
))))).)((((((((((....))))))))))...(((	chr21:46189073-46189379(-)$1	1	207	244	13.7898
((((((((((..(((......)))..)))))))))))	chr16:85706934-85707192(+)$1	1	173	210	18.5546
..((((((((((..((((...))).)..)))))))))	chr11:64014138-64014443(-)$1	1	127	164	15.9110
(((.((((...((((((....))).)))))))...))	chr11:64846068-64846321(-)$1	1	119	156	13.2927
(((..((((((((((((....))))))))))))...)	chr11:118915174-118915397(-)$1	1	122	159	18.5559
)))).)))(.(((((((....)))))))).(((((((	chr9:127998507-127998731(-)$1	1	146	183	13.2422
((((((((...((((((....))))))...)))))))	chr6:31605266-31605496(+)$1	1	171	208	14.6993
(((((((...(..((((....))))..)..)))))))	chr5:179248459-179248763(+)$1	1	152	189	13.2581
((((((((((...(((.....)))....)))))))))	chr7:98993962-98994237(-)$1	1	68	105	17.9720
((((...(((((((((.....)))))))))...))))	chr17:34053271-34053519(+)$1	1	97	134	14.8406
((((((((((((((.((....))..))))))))))).	chr1:32670688-32670986(+)$1	1	9	46	16.9239
))(.((((((((((((((.....))))))))))))))	chr19:1258708-1258967(+)$1	1	32	69	17.4991
(((.(((..(((((((((.....))))))))).))).	chr8:145067357-145067650(+)$1	1	148	185	14.7677
((((..(((((((.((......)).)))))))..)))	chr2:98264431-98264680(+)$1	1	48	85	14.6244
(((((((((.....(((....))).))))))))))..	chrX:141290418-141290743(-)$1	1	184	221	15.8074
.(((((((((....((((...))).)....)))))))	chr11:9610971-9611215(+)$1	1	72	109	17.0535
((((((....((((((......))))))....)))))	chr8:101734040-101734248(-)$1	1	60	97	12.9752
(((.(((..(((((((......)))))))))).))).	chr20:60709746-60709986(+)$1	1	34	71	13.8348
((.(((((..(((.(((....))).)))..)))...)	chr17:76109078-76109394(-)$1	1	217	254	13.2628
(((.((.(.(((((((((...))))))))).).)).)	chr7:6064159-6064393(-)$1	1	147	184	14.8659
(((.(((((((((((((.....)))))))))))))))	chr1:44170866-44171113(+)$1	1	124	161	17.5942
..((((((((...((((....)))....)...)))))	chr9:125581719-125582019(-)$1	1	117	154	13.6598
((...((.(.((.((((......).)))))).))...	chr2:44545931-44546215(-)$1	1	38	75	13.2259
((...(((.((....((....))...)).)))....)	chr5:34915812-34916079(+)$1	1	26	63	13.2202
(((..(((((....(((....)))....)))))..))	chr1:150237734-150238013(-)$1	1	54	91	13.4401
((((((.((...(((......)))...)).)))))))	chr11:60658239-60658533(-)$1	1	217	254	16.5672

#PSSM
d : 0.16	c : 0.16	e : 0.15	g : 0.13	i : 0.11	= : 0.07	: : 0.05	b : 0.03	" : 0.01	h : 0.01	[ : 0.01	f : 0.01	! : 0.01	
d : 0.18	c : 0.16	i : 0.13	g : 0.13	e : 0.11	= : 0.07	: : 0.03	f : 0.03	b : 0.01	" : 0.01	h : 0.01	# : 0.01	[ : 0.01	! : 0.01	
c : 0.15	i : 0.13	g : 0.13	e : 0.11	d : 0.09	= : 0.09	" : 0.05	# : 0.03	h : 0.03	[ : 0.03	a : 0.03	] : 0.01	b : 0.01	f : 0.01	! : 0.01	
[ : 0.24	= : 0.16	i : 0.13	g : 0.13	" : 0.05	! : 0.05	# : 0.03	b : 0.03	e : 0.03	d : 0.03	f : 0.01	c : 0.01	h : 0.01	
= : 0.22	i : 0.16	g : 0.13	" : 0.09	c : 0.05	f : 0.05	b : 0.05	! : 0.05	# : 0.03	d : 0.03	e : 0.01	[ : 0.01	] : 0.01	h : 0.01	
= : 0.30	i : 0.16	c : 0.13	g : 0.09	" : 0.07	f : 0.05	b : 0.05	# : 0.01	] : 0.01	d : 0.01	! : 0.01	h : 0.01	e : 0.01	
= : 0.30	c : 0.15	i : 0.15	g : 0.09	f : 0.05	" : 0.05	[ : 0.05	a : 0.03	d : 0.01	# : 0.01	h : 0.01	b : 0.01	e : 0.01	
= : 0.32	i : 0.16	c : 0.11	[ : 0.07	g : 0.07	f : 0.03	a : 0.03	" : 0.03	! : 0.03	d : 0.01	# : 0.01	h : 0.01	e : 0.01	b : 0.01	
= : 0.33	i : 0.16	! : 0.07	g : 0.07	a : 0.05	c : 0.05	[ : 0.05	" : 0.05	f : 0.03	# : 0.01	h : 0.01	e : 0.01	b : 0.01	
= : 0.32	i : 0.15	[ : 0.11	" : 0.09	g : 0.07	! : 0.05	f : 0.03	c : 0.03	$ : 0.03	# : 0.01	h : 0.01	b : 0.01	e : 0.01	
= : 0.28	" : 0.15	i : 0.13	g : 0.11	b : 0.07	c : 0.05	# : 0.05	! : 0.03	$ : 0.03	[ : 0.01	a : 0.01	f : 0.01	
= : 0.28	i : 0.13	" : 0.11	g : 0.09	# : 0.07	c : 0.05	b : 0.05	a : 0.03	$ : 0.03	[ : 0.03	! : 0.03	f : 0.03	
= : 0.26	c : 0.13	i : 0.13	g : 0.09	" : 0.07	[ : 0.07	# : 0.07	$ : 0.03	! : 0.03	f : 0.03	e : 0.01	a : 0.01	
= : 0.24	c : 0.18	[ : 0.09	i : 0.09	g : 0.07	d : 0.07	# : 0.07	$ : 0.03	f : 0.03	e : 0.01	o : 0.01	! : 0.01	a : 0.01	
c : 0.35	= : 0.20	i : 0.09	g : 0.07	d : 0.07	[ : 0.03	a : 0.03	f : 0.03	e : 0.01	o : 0.01	b : 0.01	# : 0.01	
c : 0.32	= : 0.15	o : 0.11	i : 0.09	b : 0.09	g : 0.07	d : 0.07	f : 0.03	e : 0.01	p : 0.01	
c : 0.22	o : 0.20	= : 0.13	d : 0.07	i : 0.07	b : 0.07	g : 0.05	n : 0.05	e : 0.01	q : 0.01	p : 0.01	f : 0.01	a : 0.01	
m : 0.39	o : 0.30	n : 0.09	= : 0.07	i : 0.05	c : 0.03	q : 0.01	p : 0.01	
m : 0.39	o : 0.30	n : 0.13	l : 0.09	= : 0.03	q : 0.01	p : 0.01	
m : 0.39	o : 0.28	n : 0.15	l : 0.09	2 : 0.01	q : 0.01	p : 0.01	a : 0.01	
m : 0.39	o : 0.28	n : 0.15	l : 0.09	2 : 0.01	q : 0.01	p : 0.01	] : 0.01	
c : 0.33	o : 0.18	= : 0.09	n : 0.09	i : 0.07	b : 0.07	g : 0.03	d : 0.03	q : 0.01	p : 0.01	f : 0.01	
c : 0.37	= : 0.13	o : 0.09	b : 0.09	i : 0.07	g : 0.05	n : 0.05	d : 0.03	f : 0.03	e : 0.01	q : 0.01	
c : 0.39	= : 0.15	i : 0.09	g : 0.07	d : 0.07	f : 0.03	e : 0.01	q : 0.01	n : 0.01	] : 0.01	4 : 0.01	2 : 0.01	b : 0.01	a : 0.01	3 : 0.01	
] : 0.24	= : 0.20	i : 0.09	g : 0.07	d : 0.07	3 : 0.07	4 : 0.07	c : 0.05	2 : 0.03	f : 0.03	e : 0.01	
= : 0.26	i : 0.13	g : 0.11	c : 0.09	a : 0.07	2 : 0.07	3 : 0.07	4 : 0.07	d : 0.03	f : 0.03	e : 0.01	
= : 0.28	i : 0.13	2 : 0.11	g : 0.11	4 : 0.09	c : 0.07	3 : 0.05	d : 0.03	f : 0.03	e : 0.01	] : 0.01	b : 0.01	
= : 0.30	g : 0.15	i : 0.13	4 : 0.09	c : 0.09	2 : 0.05	f : 0.05	] : 0.03	b : 0.03	3 : 0.01	a : 0.01	
= : 0.33	i : 0.15	g : 0.13	b : 0.07	a : 0.05	4 : 0.05	f : 0.03	] : 0.03	2 : 0.03	c : 0.01	d : 0.01	3 : 0.01	e : 0.01	
= : 0.33	i : 0.15	g : 0.11	c : 0.07	4 : 0.05	b : 0.05	] : 0.03	f : 0.03	3 : 0.03	2 : 0.03	d : 0.01	: : 0.01	e : 0.01	
= : 0.33	i : 0.15	g : 0.11	3 : 0.09	c : 0.07	4 : 0.05	] : 0.05	a : 0.03	f : 0.03	d : 0.01	e : 0.01	
= : 0.28	i : 0.16	3 : 0.11	g : 0.11	c : 0.09	f : 0.05	4 : 0.03	a : 0.03	2 : 0.01	: : 0.01	d : 0.01	] : 0.01	e : 0.01	
= : 0.26	i : 0.15	3 : 0.13	g : 0.09	] : 0.07	2 : 0.05	f : 0.05	c : 0.03	e : 0.03	4 : 0.03	: : 0.01	h : 0.01	b : 0.01	
= : 0.22	i : 0.18	3 : 0.09	g : 0.09	b : 0.07	c : 0.05	] : 0.05	2 : 0.05	e : 0.03	4 : 0.03	d : 0.01	f : 0.01	: : 0.01	h : 0.01	
= : 0.22	i : 0.15	c : 0.13	3 : 0.09	g : 0.09	e : 0.07	d : 0.05	b : 0.05	] : 0.01	f : 0.01	a : 0.01	h : 0.01	4 : 0.01	2 : 0.01	
= : 0.18	i : 0.15	c : 0.15	d : 0.09	e : 0.09	] : 0.09	g : 0.07	3 : 0.05	h : 0.03	f : 0.01	: : 0.01	4 : 0.01	
= : 0.16	e : 0.15	i : 0.15	c : 0.13	d : 0.11	g : 0.09	h : 0.03	b : 0.03	: : 0.03	f : 0.01	2 : 0.01	] : 0.01	3 : 0.01	

#score	798.4750377123868
#seq	53
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_UTR_m1_run1.txt

#BEAR
====[dddd!!bbnnnnnbb333dddd=====	chr1:246646837-246647078(-)$1	241	20	52	13.0803
[a!!gggggggbbnnnnnbb]ggggggg22a]	chr1:20235737-20235980(+)$1	243	146	178	12.7441
hhhh[bb[a[cccnnnnnccc]abb]hhhhhh	chr3:197476852-197477158(+)$1	306	244	276	12.2069
ffffccc[eeeeennnnneeeeeccc]fffff	chr11:3010297-3010557(-)$1	260	225	257	10.3868
dddd"""ffffffnnnnnffffffdddd]a]a	chr7:104752960-104753191(-)$1	231	147	179	11.3356
!!cccdddd[cccooooooccc]dddd]ccc2	chr16:2028586-2028798(+)$1	212	13	45	11.9273
eeeee!!ffffffnnnnnffffff333eeeee	chr6:170844171-170844435(-)$1	264	44	76	11.3802
eeee[ccc!!cccnnnnncccccceeeee:::	chr2:169721822-169722137(-)$1	315	229	261	10.9814
ee[a[a[ccc[cccmmmmccc]ccc]a]a]ee	chrX:41193696-41193954(+)$1	258	86	118	11.0504
e!!==========oooooo==========22e	chr12:72255091-72255351(+)$1	260	146	178	13.8810
###cccccc[cccmmmmccc333ccc]ccc44	chr1:20235025-20235264(+)$1	239	125	157	11.0641
==============lll==============F	chr5:112350348-112350588(+)$1	240	22	54	12.8433
dddiiiiiiiiirrrrrrrrriiiiiiiii]d	chr20:34252564-34252818(-)$1	254	144	176	10.0028
========="""bblllbb333==========	chr11:46141096-46141400(-)$1	304	211	243	11.7343
eeeeegggggggoooooogggggggeeeeecc	chr2:61763836-61764097(-)$1	261	53	85	11.6536
eeffffff!!cccnnnnnccc4444ffffff6	chr1:246646682-246646929(-)$1	247	57	89	12.2739
hhhh[bb[a[cccnnnnnccc]abb]hhhhhh	chr3:197477070-197477322(+)$1	252	26	58	12.2069
c]ffffffeeeeennnnneeeeeiiiiiiiii	chr16:1361828-1362076(+)$1	248	75	107	11.0610
eee[===========lll===========]ee	chr11:3011271-3011531(-)$1	260	141	173	12.8353
c[eeeee!!cccooooooccc22eeeee]ccc	chr17:29632117-29632359(+)$1	242	143	175	12.5349
fffff[bb!!cccnnnnnccc22bbffffff6	chr12:49085095-49085321(-)$1	226	127	159	11.4887
[a[a[dddd[cccooooooccc]dddd]a]ab	chr1:155532349-155532628(-)$1	279	181	213	12.2318
eeee[eeeee[cccmmmmccc]eeeee]eeee	chr7:923631-923877(+)$1	246	212	244	9.7859
b[a[bb[ccccccnnnnnccc333ccc]bb]a	chr7:104753296-104753543(-)$1	247	109	141	13.1233
==[eeeee!!a[aooooooaa22eeeee====	chr1:15988711-15988966(+)$1	255	112	144	12.1848
!!cccdddd[cccooooooccc]dddd]ccc2	chr16:2028578-2028786(+)$1	208	21	53	11.9273
dddd"""ffffffnnnnnffffffdddd]a]a	chr7:104752927-104753160(-)$1	233	116	148	11.3356
[ggggggg[ddddnnnnndddd]ggggggg]g	chr1:20234939-20235191(+)$1	252	182	214	12.5095
Jggggggg[cccooooooccc]gggggggddd	chr11:3009228-3009472(-)$1	244	74	106	11.5618
iiiiiiiii[cccnnnnnccc22iiiiiiiii	chr4:1385562-1385789(+)$1	227	78	110	15.2894
[a!!gggggggbbnnnnnbb]ggggggg22a]	chr1:20235671-20235937(+)$1	266	212	244	12.7441
""cccccc!!ccclllccc4444ccc]ccc33	chr21:38458801-38459057(+)$1	256	157	189	11.3642
h$$$$$gggggggnnnnnggggggg]hhhhhh	chr15:28508123-28508384(-)$1	261	183	215	11.2020
ccc!!dddd[cccnnnnnccc333dddd4444	chr1:20235995-20236245(+)$1	250	130	162	13.7793
eee[eeeeeddddnnnnndddd]eeeeeeeee	chr1:225614985-225615269(-)$1	284	33	65	10.6485
c[eeeee!!cccooooooccc22eeeee]ccc	chr17:29632159-29632448(+)$1	289	101	133	12.5349
ff[ccc[bb!!bboooooobb22bb]ccc22f	chr3:197476958-197477196(+)$1	238	157	189	10.1355
eee[===========lll===========]ee	chr11:3011162-3011402(-)$1	240	12	44	12.8353
iiiiiiiii[cccnnnnnccc]iiiiiiiiig	chr17:29632440-29632688(+)$1	248	169	201	15.4530
iiiiiiiii[cccammmma]ccc]iiiiiiii	chr2:61763616-61763853(-)$1	237	73	105	11.7959
!!bbeeeee[cccnnnnnccceeeee]bb22g	chr1:155657981-155658195(-)$1	214	110	142	11.9864
ee!!ffffff[bbnnnnnbb]ffffff]eeee	chr1:20235810-20236025(+)$1	215	73	105	10.8481
==========[cccmmmmccc==========:	chr1:20236808-20237048(+)$1	240	8	40	11.6924
ggggggg[eeeeeooooooeeeeeggggggg:	chr1:246646591-246646879(-)$1	288	69	101	10.2295
dddd"""ffffffnnnnnffffffdddd]a]a	chr7:104752833-104753078(-)$1	245	34	66	11.3356
!!dddd[bbcccooooooccc]bb]dddd22b	chr16:1362463-1362685(+)$1	222	114	146	10.6698
c[bb[ccc[cccooooooccc]ccc22bb]cc	chr1:155658225-155658511(-)$1	286	167	199	12.0153
iiiiii[ffffffnnnnnffffff22iiiiii	chr11:3010357-3010617(-)$1	260	94	126	12.2796
eeeee"""eeeeennnnneeeeeeeeee]bb]	chr5:151151923-151152181(+)$1	258	157	189	10.6226
bb[a[gggggggooooooggggggg22a]bb]	chr7:104753068-104753344(-)$1	276	38	70	11.1054
eeeeeccc[cccooooooccc]ccc22eeeee	chr20:23355375-23355619(-)$1	244	172	204	12.2361
dddd[ccc[cccooooooccc]ccc]ddddcc	chr7:155571386-155571628(+)$1	242	164	196	12.3261
ccc!!dddd[cccnnnnnccc333dddd4444	chr1:20235922-20236195(+)$1	273	203	235	13.7793
22cccccc[cccooooooccc]cccffffff[	chr22:45714200-45714466(+)$1	266	85	117	11.0350
((((iiiiiiiiinnnnniiiiiiiii]ccc4	chr9:33935558-33935803(-)$1	245	71	103	11.0469
ggg[ccc!!ddddmmmmdddd]ccc]gggggg	chr1:20237017-20237266(+)$1	249	188	220	9.4000
####===========lll===========22d	chr11:88056656-88056906(-)$1	250	181	213	12.5474

#otherMatches

#Seq PSSM
AGAAUGUGAAUGCUCAUUGCUGGUCAUUUUUU	chr1:246646837-246647078(-)$1	241	20	52	13.0803
GAUUAAAAAAAGUACACAGCAUUUUUUUUCUG	chr1:20235737-20235980(+)$1	243	146	178	12.7441
CGGGAGCGCAGGCUCGACGCCAGGUGCCCGGC	chr3:197476852-197477158(+)$1	306	244	276	12.2069
UAUAGUUGUAAGGUUUGUCUUUGAGCAUAUAG	chr11:3010297-3010557(-)$1	260	225	257	10.3868
UUCUGAGAGGGCAAAAAAUGCCCUGGAGUCAC	chr7:104752960-104753191(-)$1	231	147	179	11.3356
UUGGACUUCCUGUGGCACAACAUGAAGCUCCC	chr16:2028586-2028798(+)$1	212	13	45	11.9273
GUGUACACUGGGGACGCACUCCGGAUCUGCAU	chr6:170844171-170844435(-)$1	264	44	76	11.3802
AGGCUCUGCUUGACCCCCUCAUAGGCCUGCUG	chr2:169721822-169722137(-)$1	315	229	261	10.9814
UUGUGUGUGCGUGCGCAGGCGGGCGGAGGGGG	chrX:41193696-41193954(+)$1	258	86	118	11.0504
uauccauacuccaguuuguuggaguaugguag	chr12:72255091-72255351(+)$1	260	146	178	13.8810
AAGGUUUUUCAUGUUCGCAUUUUAAAUAACGA	chr1:20235025-20235264(+)$1	239	125	157	11.0641
CCAGGGCGUUAAGGGGGCUUUAGUGUUUUGGC	chr5:112350348-112350588(+)$1	240	22	54	12.8433
UCCCGCAGCCCCUGAACGGGUGGGGCUGUGCG	chr20:34252564-34252818(-)$1	254	144	176	10.0028
CUGUGGCUUGCACCCCCGGAGAAGGCCACAGG	chr11:46141096-46141400(-)$1	304	211	243	11.7343
ACAGUGGAGGAUGCCCUGAUUCUCCUUCAUUC	chr2:61763836-61764097(-)$1	261	53	85	11.6536
AUAGCUUAGUGAAUAUUCUUCCAAAUAAGUUU	chr1:246646682-246646929(-)$1	247	57	89	12.2739
CGGGAGCGCAGGCUCGACGCCAGGUGCCCGGC	chr3:197477070-197477322(+)$1	252	26	58	12.2069
GCUGGGCUGCUCCACGUGGGAGUGGAGGGUGG	chr16:1361828-1362076(+)$1	248	75	107	11.0610
UAUUUGUGCCUAUAUGUCAUAUAGGCACAUAU	chr11:3011271-3011531(-)$1	260	141	173	12.8353
UGAACACGGCUUGCUGGGAGGAGGUGUUGGCU	chr17:29632117-29632359(+)$1	242	143	175	12.5349
GAGUUUGUUUUCAUGAUUUGAUUGCAGCUUAC	chr12:49085095-49085321(-)$1	226	127	159	11.4887
UGGUGGUUGGUGGGAGCAGCCAGCGACGAGCC	chr1:155532349-155532628(-)$1	279	181	213	12.2318
CGGUUCUGCCCGUGGCCCCACUGGCGGCAUCG	chr7:923631-923877(+)$1	246	212	244	9.7859
UGAGGUGGGUGGUGUAAGGCUUGAGCUGAUGU	chr7:104753296-104753543(-)$1	247	109	141	13.1233
GACAUUUUAAUAGGGCGAGCAGGAGGGUUUAA	chr1:15988711-15988966(+)$1	255	112	144	12.1848
UUGGACUUCCUGUGGCACAACAUGAAGCUCCC	chr16:2028578-2028786(+)$1	208	21	53	11.9273
UUCUGAGAGGGCAAAAAAUGCCCUGGAGUCAC	chr7:104752927-104753160(-)$1	233	116	148	11.3356
AUGUUUUUAUAGGAGAAGCCUGGAAGAAUAAG	chr1:20234939-20235191(+)$1	252	182	214	12.5095
AAGGAAAGGAAAUCAUUUUUUGCUUUCUUCUU	chr11:3009228-3009472(-)$1	244	74	106	11.5618
uagugggaucauguuuuucaucuguccugcug	chr4:1385562-1385789(+)$1	227	78	110	15.2894
GAUUAAAAAAAGUACACAGCAUUUUUUUUCUG	chr1:20235671-20235937(+)$1	266	212	244	12.7441
UUGGCAGACUUACCCUGUACCACUCUAGCCCU	chr21:38458801-38459057(+)$1	256	157	189	11.3642
UCCGCUGUGGAAGUCAGUUUUCCAUUGCUUUG	chr15:28508123-28508384(-)$1	261	183	215	11.2020
GGCCAGAUCCUCUCAGAAAGAUAAGAUUGUAU	chr1:20235995-20236245(+)$1	250	130	162	13.7793
GCGGUCCUGCAGUAGGAGGCUGACAGGGCGCG	chr1:225614985-225615269(-)$1	284	33	65	10.6485
UGAACACGGCUUGCUGGGAGGAGGUGUUGGCU	chr17:29632159-29632448(+)$1	289	101	133	12.5349
CCAGGUGCCCGGCUGGACCGCGAGGGACCCGG	chr3:197476958-197477196(+)$1	238	157	189	10.1355
UAUUUGUGCCUAUAUGUCAUAUAGGCACAUAU	chr11:3011162-3011402(-)$1	240	12	44	12.8353
GAAAUAUUUGGGAUCCAUUUCAGAAUAUUUCC	chr17:29632440-29632688(+)$1	248	169	201	15.4530
GGGAGGGCGGGCCCUAAUGAGGUGUGUUUUUC	chr2:61763616-61763853(-)$1	237	73	105	11.7959
AACGAUCCCAGUGUCGGUUGCGGGAUCCGCCU	chr1:155657981-155658195(-)$1	214	110	142	11.9864
GAUUAAAAAAAGUACACAGCAUUUUUUUUCUG	chr1:20235810-20236025(+)$1	215	73	105	10.8481
GGAGCAGUGGUGCAUAGCUGCUUACUGCUCUU	chr1:20236808-20237048(+)$1	240	8	40	11.6924
UAUUUGCGUAAAACAGUGCUUUUGGUAAAUGU	chr1:246646591-246646879(-)$1	288	69	101	10.2295
UUCUGAGAGGGCAAAAAAUGCCCUGGAGUCAC	chr7:104752833-104753078(-)$1	245	34	66	11.3356
GGGCCUUGUCUCCCUAACGAGUGCCAGGUGAG	chr16:1362463-1362685(+)$1	222	114	146	10.6698
CGCAGGACGGCCGAAGGUGGUGGUUGGUGGGA	chr1:155658225-155658511(-)$1	286	167	199	12.0153
AUGCUUGCUUUUUUGCUUAAAGGGAAAAGUGU	chr11:3010357-3010617(-)$1	260	94	126	12.2796
CCUUCGGUUUUGCAGAGAGCAAAGAGGGAGCA	chr5:151151923-151152181(+)$1	258	157	189	10.6226
UUGGAGUCCUGUGGAUGGAUGGGGUGGUGGAU	chr7:104753068-104753344(-)$1	276	38	70	11.1054
ACAGUCGUGACCGUGUGUGGUGGCGUCACUGU	chr20:23355375-23355619(-)$1	244	172	204	12.2361
UCCUAGUCAUGUAAUUGCACAGGACAAGGAGG	chr7:155571386-155571628(+)$1	242	164	196	12.3261
GGCCAGAUCCUCUCAGAAAGAUAAGAUUGUAU	chr1:20235922-20236195(+)$1	273	203	235	13.7793
CCUCCGAAGGGUUUUGUUACUGUUUUCUGGGA	chr22:45714200-45714466(+)$1	266	85	117	11.0350
CGUUAAAAAGCAGCCCUUUUGCUUUUUUGUUU	chr9:33935558-33935803(-)$1	245	71	103	11.0469
CUUGUGGAGCAGCUGGAGCUGGCUGGGAGGGA	chr1:20237017-20237266(+)$1	249	188	220	9.4000
cuuaucagcuuaagaagcuuuugggcugagau	chr11:88056656-88056906(-)$1	250	181	213	12.5474

#DB
((((.((((..((.....))...)))))))))	chr1:246646837-246647078(-)$1	1	20	52	13.0803
.(..(((((((((.....)).)))))))..).	chr1:20235737-20235980(+)$1	1	146	178	12.7441
((((.((.(.(((.....))).))).))))))	chr3:197476852-197477158(+)$1	1	244	276	12.2069
(((((((.(((((.....)))))))).)))))	chr11:3010297-3010557(-)$1	1	225	257	10.3868
((((...((((((.....)))))))))).).)	chr7:104752960-104753191(-)$1	1	147	179	11.3356
..(((((((.(((......))).)))).))).	chr16:2028586-2028798(+)$1	1	13	45	11.9273
(((((..((((((.....))))))...)))))	chr6:170844171-170844435(-)$1	1	44	76	11.3802
((((.(((..(((.....)))))))))))...	chr2:169721822-169722137(-)$1	1	229	261	10.9814
((.(.(.(((.(((....))).))).).).))	chrX:41193696-41193954(+)$1	1	86	118	11.0504
(..((((((((((......))))))))))..)	chr12:72255091-72255351(+)$1	1	146	178	13.8810
...((((((.(((....)))...))).)))..	chr1:20235025-20235264(+)$1	1	125	157	11.0641
((((((((((((((...))))))))))))))(	chr5:112350348-112350588(+)$1	1	22	54	12.8433
((((((((((((.........))))))))).)	chr20:34252564-34252818(-)$1	1	144	176	10.0028
(((((((((...((...))...))))))))))	chr11:46141096-46141400(-)$1	1	211	243	11.7343
)))))(((((((......)))))))(((((((	chr2:61763836-61764097(-)$1	1	53	85	11.6536
((((((((..(((.....)))....)))))).	chr1:246646682-246646929(-)$1	1	57	89	12.2739
((((.((.(.(((.....))).))).))))))	chr3:197477070-197477322(+)$1	1	26	58	12.2069
).))))))(((((.....)))))(((((((((	chr16:1361828-1362076(+)$1	1	75	107	11.0610
(((.(((((((((((...))))))))))).))	chr11:3011271-3011531(-)$1	1	141	173	12.8353
(.(((((..(((......)))..))))).)))	chr17:29632117-29632359(+)$1	1	143	175	12.5349
(((((.((..(((.....)))..)))))))).	chr12:49085095-49085321(-)$1	1	127	159	11.4887
.(.(.((((.(((......))).)))).).))	chr1:155532349-155532628(-)$1	1	181	213	12.2318
((((.(((((.(((....))).))))).))))	chr7:923631-923877(+)$1	1	212	244	9.7859
(.(.((.((((((.....)))...))).)).)	chr7:104753296-104753543(-)$1	1	109	141	13.1233
((.(((((..(.(......))..)))))))))	chr1:15988711-15988966(+)$1	1	112	144	12.1848
..(((((((.(((......))).)))).))).	chr16:2028578-2028786(+)$1	1	21	53	11.9273
((((...((((((.....)))))))))).).)	chr7:104752927-104753160(-)$1	1	116	148	11.3356
.(((((((.((((.....)))).))))))).)	chr1:20234939-20235191(+)$1	1	182	214	12.5095
((((((((.(((......))).)))))))(((	chr11:3009228-3009472(-)$1	1	74	106	11.5618
(((((((((.(((.....)))..)))))))))	chr4:1385562-1385789(+)$1	1	78	110	15.2894
.(..(((((((((.....)).)))))))..).	chr1:20235671-20235937(+)$1	1	212	244	12.7441
..((((((..(((...)))....))).)))..	chr21:38458801-38459057(+)$1	1	157	189	11.3642
(.....(((((((.....))))))).))))))	chr15:28508123-28508384(-)$1	1	183	215	11.2020
(((..((((.(((.....)))...))))....	chr1:20235995-20236245(+)$1	1	130	162	13.7793
(((.(((((((((.....)))).)))))))))	chr1:225614985-225615269(-)$1	1	33	65	10.6485
(.(((((..(((......)))..))))).)))	chr17:29632159-29632448(+)$1	1	101	133	12.5349
((.(((.((..((......))..)).)))..)	chr3:197476958-197477196(+)$1	1	157	189	10.1355
(((.(((((((((((...))))))))))).))	chr11:3011162-3011402(-)$1	1	12	44	12.8353
(((((((((.(((.....))).)))))))))(	chr17:29632440-29632688(+)$1	1	169	201	15.4530
(((((((((.((((....).))).))))))))	chr2:61763616-61763853(-)$1	1	73	105	11.7959
..(((((((.(((.....)))))))).))..)	chr1:155657981-155658195(-)$1	1	110	142	11.9864
((..((((((.((.....)).)))))).))))	chr1:20235810-20236025(+)$1	1	73	105	10.8481
((((((((((.(((....))))))))))))).	chr1:20236808-20237048(+)$1	1	8	40	11.6924
(((((((.(((((......)))))))))))).	chr1:246646591-246646879(-)$1	1	69	101	10.2295
((((...((((((.....)))))))))).).)	chr7:104752833-104753078(-)$1	1	34	66	11.3356
..((((.(((((......))).)).))))..)	chr16:1362463-1362685(+)$1	1	114	146	10.6698
(.((.(((.(((......))).)))..)).))	chr1:155658225-155658511(-)$1	1	167	199	12.0153
((((((.((((((.....))))))..))))))	chr11:3010357-3010617(-)$1	1	94	126	12.2796
(((((...(((((.....)))))))))).)).	chr5:151151923-151152181(+)$1	1	157	189	10.6226
((.(.(((((((......)))))))..).)).	chr7:104753068-104753344(-)$1	1	38	70	11.1054
((((((((.(((......))).)))..)))))	chr20:23355375-23355619(-)$1	1	172	204	12.2361
((((.(((.(((......))).))).))))((	chr7:155571386-155571628(+)$1	1	164	196	12.3261
(((..((((.(((.....)))...))))....	chr1:20235922-20236195(+)$1	1	203	235	13.7793
..)))(((.(((......))).)))((((((.	chr22:45714200-45714466(+)$1	1	85	117	11.0350
....(((((((((.....))))))))).))).	chr9:33935558-33935803(-)$1	1	71	103	11.0469
(((.(((..((((....)))).))).))))))	chr1:20237017-20237266(+)$1	1	188	220	9.4000
....(((((((((((...)))))))))))..)	chr11:88056656-88056906(-)$1	1	181	213	12.5474

#PSSM
e : 0.22	c : 0.10	= : 0.08	d : 0.08	[ : 0.07	! : 0.07	i : 0.07	h : 0.05	f : 0.05	# : 0.03	b : 0.03	g : 0.03	J : 0.01	" : 0.01	2 : 0.01	( : 0.01	
e : 0.21	= : 0.08	d : 0.08	! : 0.08	[ : 0.07	g : 0.07	i : 0.07	a : 0.05	f : 0.05	h : 0.03	# : 0.03	c : 0.03	] : 0.01	" : 0.01	$ : 0.01	b : 0.01	2 : 0.01	( : 0.01	
e : 0.19	d : 0.10	c : 0.10	[ : 0.08	= : 0.07	! : 0.07	f : 0.07	g : 0.07	i : 0.07	h : 0.03	# : 0.03	b : 0.03	a : 0.01	$ : 0.01	( : 0.01	
e : 0.15	c : 0.10	= : 0.08	! : 0.08	d : 0.08	i : 0.08	[ : 0.08	f : 0.07	a : 0.05	g : 0.05	h : 0.03	b : 0.03	$ : 0.01	( : 0.01	# : 0.01	
[ : 0.17	e : 0.15	c : 0.14	= : 0.12	i : 0.10	g : 0.08	f : 0.07	" : 0.05	! : 0.03	b : 0.01	$ : 0.01	d : 0.01	
c : 0.17	d : 0.12	g : 0.12	= : 0.12	i : 0.10	e : 0.10	" : 0.07	b : 0.05	f : 0.05	! : 0.01	a : 0.01	[ : 0.01	$ : 0.01	
c : 0.15	g : 0.14	= : 0.12	d : 0.10	e : 0.10	[ : 0.08	i : 0.08	" : 0.07	b : 0.05	f : 0.05	! : 0.01	
c : 0.15	f : 0.14	g : 0.12	= : 0.12	d : 0.10	i : 0.08	[ : 0.07	e : 0.07	! : 0.05	b : 0.05	" : 0.01	
! : 0.14	e : 0.12	= : 0.12	d : 0.10	f : 0.10	[ : 0.10	g : 0.08	i : 0.08	c : 0.05	a : 0.03	b : 0.03	
[ : 0.21	c : 0.17	! : 0.12	f : 0.10	= : 0.10	g : 0.08	e : 0.08	d : 0.05	i : 0.03	" : 0.01	
c : 0.43	g : 0.08	f : 0.08	= : 0.08	e : 0.07	[ : 0.07	d : 0.05	! : 0.03	i : 0.03	" : 0.01	a : 0.01	
c : 0.49	b : 0.08	f : 0.08	= : 0.08	e : 0.07	g : 0.05	d : 0.05	i : 0.03	" : 0.01	[ : 0.01	
c : 0.35	o : 0.17	b : 0.10	f : 0.08	= : 0.08	e : 0.07	d : 0.05	r : 0.01	a : 0.01	g : 0.01	i : 0.01	
n : 0.47	o : 0.29	= : 0.07	c : 0.05	m : 0.03	r : 0.01	b : 0.01	l : 0.01	a : 0.01	
n : 0.47	o : 0.29	m : 0.10	l : 0.05	= : 0.05	r : 0.01	
n : 0.47	o : 0.29	m : 0.10	l : 0.10	r : 0.01	
n : 0.47	o : 0.29	m : 0.10	l : 0.08	r : 0.01	c : 0.01	
n : 0.47	o : 0.29	m : 0.07	l : 0.05	c : 0.03	= : 0.01	r : 0.01	b : 0.01	d : 0.01	
c : 0.42	o : 0.12	b : 0.08	f : 0.08	= : 0.07	e : 0.05	g : 0.05	d : 0.05	r : 0.01	a : 0.01	i : 0.01	
c : 0.45	b : 0.08	f : 0.08	= : 0.08	e : 0.07	g : 0.05	d : 0.05	r : 0.01	3 : 0.01	a : 0.01	4 : 0.01	] : 0.01	i : 0.01	
c : 0.45	f : 0.08	= : 0.08	e : 0.07	3 : 0.05	] : 0.05	g : 0.05	d : 0.05	r : 0.01	a : 0.01	4 : 0.01	b : 0.01	i : 0.01	
] : 0.21	3 : 0.10	f : 0.10	= : 0.10	2 : 0.10	g : 0.08	e : 0.08	c : 0.08	i : 0.03	4 : 0.03	d : 0.03	
c : 0.14	= : 0.12	g : 0.10	e : 0.10	f : 0.10	2 : 0.10	3 : 0.08	] : 0.08	i : 0.05	a : 0.03	4 : 0.03	b : 0.01	
c : 0.17	e : 0.14	g : 0.12	= : 0.12	f : 0.10	b : 0.08	i : 0.08	d : 0.07	3 : 0.05	4 : 0.01	] : 0.01	
c : 0.17	d : 0.15	g : 0.14	e : 0.14	= : 0.12	i : 0.10	b : 0.07	3 : 0.01	4 : 0.01	f : 0.01	] : 0.01	2 : 0.01	
d : 0.17	e : 0.15	] : 0.12	= : 0.12	i : 0.10	g : 0.08	c : 0.07	f : 0.07	2 : 0.07	3 : 0.01	
d : 0.19	e : 0.14	= : 0.12	i : 0.12	g : 0.10	] : 0.07	f : 0.07	h : 0.05	2 : 0.05	c : 0.03	3 : 0.01	a : 0.01	
e : 0.15	= : 0.14	] : 0.14	d : 0.12	g : 0.10	i : 0.10	f : 0.07	h : 0.05	c : 0.05	b : 0.03	a : 0.01	
= : 0.15	] : 0.12	e : 0.12	c : 0.10	i : 0.10	f : 0.07	g : 0.07	h : 0.05	b : 0.05	2 : 0.03	a : 0.03	4 : 0.03	d : 0.03	
2 : 0.12	c : 0.12	e : 0.10	i : 0.10	= : 0.08	] : 0.08	f : 0.07	h : 0.05	a : 0.05	b : 0.05	g : 0.05	d : 0.03	4 : 0.03	: : 0.01	
c : 0.14	e : 0.14	] : 0.10	= : 0.08	2 : 0.08	i : 0.08	f : 0.07	a : 0.05	h : 0.05	4 : 0.05	g : 0.03	b : 0.03	: : 0.01	d : 0.01	3 : 0.01	
e : 0.15	c : 0.08	] : 0.07	a : 0.07	4 : 0.07	i : 0.07	g : 0.07	= : 0.05	h : 0.05	: : 0.05	d : 0.05	f : 0.03	2 : 0.03	6 : 0.03	b : 0.03	F : 0.01	3 : 0.01	[ : 0.01	

#score	676.27296423044
#seq	57
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_transcript_m3_run1.txt

#BEAR
dddddddoooooodddd333d	chr7:25163240-25163481(-)$1	241	45	66	12.2878
"""ddddoooooodddd]ddd	chr7:105148474-105148850(-)$1	376	299	320	11.9791
d[eeeeeooooooeeeee]dd	chr6:30680708-30680996(-)$1	288	198	219	14.9022
e[eeeeeooooooeeeee333	chr12:69663242-69663519(+)$1	277	70	91	15.7850
ddeeeeeooooooeeeee444	chr2:27607778-27608001(-)$1	223	188	209	15.3976
::eeeeeooooooeeeeeFFF	chr11:63974766-63975019(+)$1	253	226	247	11.9735
!!eeeeeooooooeeeee333	chr7:26251196-26251460(+)$1	264	167	188	16.1365
cceeeeeooooooeeeee555	chr8:117862758-117862969(-)$1	211	33	54	13.6489
=======oooooo========	chr1:151026625-151026904(-)$1	279	92	113	11.3789
cceeeeeooooooeeeee]cc	chr10:91497092-91497380(+)$1	288	127	148	14.8833
e!!ddddoooooodddd]eee	chr14:24686081-24686324(-)$1	243	157	178	11.9160
gggddddoooooodddd>>>>	chr16:85696867-85697165(+)$1	298	50	71	11.7972
++eeeeeooooooeeeeefff	chr20:57563953-57564195(+)$1	242	183	204	13.3793
eee[cccooooooccc]eeee	chr5:76987049-76987318(-)$1	269	141	162	11.0650
""eeeeeooooooeeeee22c	chr6:136888757-136889099(-)$1	342	161	182	15.3497
eeeeeeeooooooeeeeefff	chr2:217365962-217366173(+)$1	211	59	80	13.9996
!!eeeeeooooooeeeee444	chr21:47692374-47692652(-)$1	278	19	40	16.1549
b[eeeeeooooooeeeee]bb	chr6:68598903-68599143(-)$1	240	156	177	14.6149
::eeeeeooooooeeeee::e	chr9:125582709-125583006(-)$1	297	207	228	11.8611
iiiiiiiooooooiiiiiiii	chr1:25553837-25554124(-)$1	287	33	54	10.7645
::eeeeeooooooeeeee:ee	chr3:128202583-128202844(-)$1	261	77	98	12.4376
cceeeeeooooooeeeeeDDD	chr3:129151843-129152092(-)$1	249	124	145	11.7006
b[eeeeeooooooeeeee]bb	chr9:95063810-95064140(-)$1	330	94	115	14.6149
!!a[cccooooooccc]a22a	chr22:29754722-29755009(-)$1	287	158	179	11.4194
##eeeeeooooooeeeee555	chr4:174253075-174253302(-)$1	227	156	177	14.1486
d[eeeeeooooooeeeee]dd	chr6:168351880-168352159(+)$1	279	197	218	14.9022
gggggggooooooggggggg2	chr13:20346369-20346656(-)$1	287	158	179	10.6986
::eeeeeooooooeeeeeccc	chr3:184042663-184042914(+)$1	251	27	48	13.1640
eeeee[aooooooa]eeeee:	chr5:33448546-33448771(+)$1	225	173	194	12.2829
"""ddddoooooodddd4444	chrX:103434274-103434543(+)$1	269	119	140	13.3085
###ddddoooooodddd4444	chr11:62600326-62600653(-)$1	327	209	230	13.2299
b[eeeeeooooooeeeee]bb	chr6:143486116-143486389(+)$1	273	1	22	14.6149
[a[ddddoooooodddda]hh	chr1:27250534-27250741(+)$1	207	75	96	11.4923
##eeeeennnnneeeee4444	chr6:26056481-26056700(-)$1	219	73	94	10.6046
ccaddddoooooodddd]a]c	chr22:36684288-36684522(-)$1	234	122	143	11.9125
####cccooooooccc4444e	chr9:140151242-140151515(+)$1	273	161	182	11.6206
!dddd[aooooooa]dddd44	chr16:89869525-89869834(-)$1	309	37	58	11.9027
ddeeeeeooooooeeeee22d	chr12:6692401-6692619(-)$1	218	61	82	14.5512
eeeee[aooooooaeeeeeee	chr17:62498237-62498442(-)$1	205	132	153	13.2496
eeee[bboooooobb]eeeee	chr17:1576557-1576833(-)$1	276	240	261	10.7038
hheeeeeooooooeeeee::C	chr1:211847693-211847949(-)$1	256	158	179	12.0805
ddeeeeeooooooeeeee444	chr2:27607692-27607952(-)$1	260	139	160	15.3976
!!eeeeeooooooeeeee555	chr2:37441963-37442196(-)$1	233	9	30	14.2451
[eeeeeaooooooa]eeeee]	chr1:22078941-22079221(-)$1	280	245	266	13.4939
eeeeeeeooooooeeeeeEEE	chr14:73577521-73577781(+)$1	260	237	258	11.7579
++eeeeeooooooeeeeeccc	chr15:25615974-25616203(-)$1	229	135	156	13.8604

#otherMatches

#Seq PSSM
UAUUUGGAGAAUCCCAAGAAG	chr7:25163240-25163481(-)$1	241	45	66	12.2878
UUUAUGAAUAAAGUUAUUUUG	chr7:105148474-105148850(-)$1	376	299	320	11.9791
CAGGCCUCCUGGAAGGCCAGC	chr6:30680708-30680996(-)$1	288	198	219	14.9022
CCAAGACAAAACAGUCUUCAU	chr12:69663242-69663519(+)$1	277	70	91	15.7850
GGGCCUCAAUGGGGAGGCAGG	chr2:27607778-27608001(-)$1	223	188	209	15.3976
AUCAGUGAGUGUCCGCUGCCC	chr11:63974766-63975019(+)$1	253	226	247	11.9735
UUCUCAUGAAAUGGUGAGUAU	chr7:26251196-26251460(+)$1	264	167	188	16.1365
AGCUAAUACCAGAGUUAGAAC	chr8:117862758-117862969(-)$1	211	33	54	13.6489
UCUGUUUUUUUACAGACAGGU	chr1:151026625-151026904(-)$1	279	92	113	11.3789
UGAAGACAUCAGAGUUUUACA	chr10:91497092-91497380(+)$1	288	127	148	14.8833
GAGGGCCCUUGCUGGCUACUG	chr14:24686081-24686324(-)$1	243	157	178	11.9160
UUCAAACUCAUUUGUUUUCUU	chr16:85696867-85697165(+)$1	298	50	71	11.7972
GUCUGUUUCCUUUGACAGUUC	chr20:57563953-57564195(+)$1	242	183	204	13.3793
UGACCACUGCUAUGUGUUCAA	chr5:76987049-76987318(-)$1	269	141	162	11.0650
CAUGAGGAACAGCCUUCAAAU	chr6:136888757-136889099(-)$1	342	161	182	15.3497
UAACAUGCUUAAUUAUGUUGG	chr2:217365962-217366173(+)$1	211	59	80	13.9996
CUUUGAUGCCAAGAUCAAUAA	chr21:47692374-47692652(-)$1	278	19	40	16.1549
caaguugucucuucaauuaga	chr6:68598903-68599143(-)$1	240	156	177	14.6149
AUUCAAGCAGGUUUUUGAGAU	chr9:125582709-125583006(-)$1	297	207	228	11.8611
UUUUUCUCUCAAUAGGAAGGU	chr1:25553837-25554124(-)$1	287	33	54	10.7645
CCUGUGGCCUCUACCACAAGA	chr3:128202583-128202844(-)$1	261	77	98	12.4376
CGGGCAAAAACCAUUGUCAAG	chr3:129151843-129152092(-)$1	249	124	145	11.7006
GAAAUGUAUUAUAAUAUUGCU	chr9:95063810-95064140(-)$1	330	94	115	14.6149
UGAAGGACGAGGAUCCAUAUG	chr22:29754722-29755009(-)$1	287	158	179	11.4194
CAAUACUAGCUUCAGUAUAAA	chr4:174253075-174253302(-)$1	227	156	177	14.1486
CCGUUGGAAAACACCAGCAGC	chr6:168351880-168352159(+)$1	279	197	218	14.9022
UGUGGUUGUGGAUGAUCGCGG	chr13:20346369-20346656(-)$1	287	158	179	10.6986
AAGAGCUGGAAGAGGCUCGGG	chr3:184042663-184042914(+)$1	251	27	48	13.1640
UUCUGGCAGAAAAGGCAGAAA	chr5:33448546-33448771(+)$1	225	173	194	12.2829
GAAGAGGUGCUGUCCUUGAAA	chrX:103434274-103434543(+)$1	269	119	140	13.3085
CCUGGGUCCACCAGCCCCUGA	chr11:62600326-62600653(-)$1	327	209	230	13.2299
AUUCCAAAUUCUGUUGGAUUC	chr6:143486116-143486389(+)$1	273	1	22	14.6149
CGCAAAACAGACUUUUUCAUU	chr1:27250534-27250741(+)$1	207	75	96	11.4923
UGCCGCGCCUCCUGCGGAGAA	chr6:26056481-26056700(-)$1	219	73	94	10.6046
CGCCCGGAAGAAGCUGGAGAU	chr22:36684288-36684522(-)$1	234	122	143	11.9125
GAAGCAGUACAUCCUGGAGAA	chr9:140151242-140151515(+)$1	273	161	182	11.6206
UUGGAGACCAUGAUGUCCAUA	chr16:89869525-89869834(-)$1	309	37	58	11.9027
UCCCUCUGUCCCAGGAGGAAG	chr12:6692401-6692619(-)$1	218	61	82	14.5512
AGUCAACAAGAGCGUGACUGG	chr17:62498237-62498442(-)$1	205	132	153	13.2496
CACCGGAGUCUUGUUGGGUGG	chr17:1576557-1576833(-)$1	276	240	261	10.7038
CUGAAGUGAAUUUGCUUCGUG	chr1:211847693-211847949(-)$1	256	158	179	12.0805
GGGCCUCAAUGGGGAGGCAGG	chr2:27607692-27607952(-)$1	260	139	160	15.3976
AUUACAGAUUAUGCUGUAUUU	chr2:37441963-37442196(-)$1	233	9	30	14.2451
CAGUUGCUCAUAUGUUAACUA	chr1:22078941-22079221(-)$1	280	245	266	13.4939
CUGGGGAUGAGUCUCCCUGUG	chr14:73577521-73577781(+)$1	260	237	258	11.7579
AAGGUCCUCGAGUGGACCCCC	chr15:25615974-25616203(-)$1	229	135	156	13.8604

#DB
(((((((......))))...)	chr7:25163240-25163481(-)$1	1	45	66	12.2878
...((((......)))).)))	chr7:105148474-105148850(-)$1	1	299	320	11.9791
(.(((((......))))).))	chr6:30680708-30680996(-)$1	1	198	219	14.9022
(.(((((......)))))...	chr12:69663242-69663519(+)$1	1	70	91	15.7850
(((((((......)))))...	chr2:27607778-27608001(-)$1	1	188	209	15.3976
..(((((......))))))))	chr11:63974766-63975019(+)$1	1	226	247	11.9735
..(((((......)))))...	chr7:26251196-26251460(+)$1	1	167	188	16.1365
(((((((......)))))...	chr8:117862758-117862969(-)$1	1	33	54	13.6489
(((((((......))))))))	chr1:151026625-151026904(-)$1	1	92	113	11.3789
(((((((......))))).))	chr10:91497092-91497380(+)$1	1	127	148	14.8833
(..((((......)))).)))	chr14:24686081-24686324(-)$1	1	157	178	11.9160
(((((((......))))....	chr16:85696867-85697165(+)$1	1	50	71	11.7972
..(((((......))))))))	chr20:57563953-57564195(+)$1	1	183	204	13.3793
(((.(((......))).))))	chr5:76987049-76987318(-)$1	1	141	162	11.0650
..(((((......)))))..)	chr6:136888757-136889099(-)$1	1	161	182	15.3497
))(((((......)))))(((	chr2:217365962-217366173(+)$1	1	59	80	13.9996
..(((((......)))))...	chr21:47692374-47692652(-)$1	1	19	40	16.1549
(.(((((......))))).))	chr6:68598903-68599143(-)$1	1	156	177	14.6149
..(((((......)))))..(	chr9:125582709-125583006(-)$1	1	207	228	11.8611
(((((((......))))))))	chr1:25553837-25554124(-)$1	1	33	54	10.7645
..(((((......))))).((	chr3:128202583-128202844(-)$1	1	77	98	12.4376
))(((((......))))))))	chr3:129151843-129152092(-)$1	1	124	145	11.7006
(.(((((......))))).))	chr9:95063810-95064140(-)$1	1	94	115	14.6149
..(.(((......))).)..)	chr22:29754722-29755009(-)$1	1	158	179	11.4194
..(((((......)))))...	chr4:174253075-174253302(-)$1	1	156	177	14.1486
(.(((((......))))).))	chr6:168351880-168352159(+)$1	1	197	218	14.9022
(((((((......))))))).	chr13:20346369-20346656(-)$1	1	158	179	10.6986
..(((((......)))))(((	chr3:184042663-184042914(+)$1	1	27	48	13.1640
(((((.(......).))))).	chr5:33448546-33448771(+)$1	1	173	194	12.2829
...((((......))))....	chrX:103434274-103434543(+)$1	1	119	140	13.3085
...((((......))))....	chr11:62600326-62600653(-)$1	1	209	230	13.2299
(.(((((......))))).))	chr6:143486116-143486389(+)$1	1	1	22	14.6149
.(.((((......))))).))	chr1:27250534-27250741(+)$1	1	75	96	11.4923
..(((((.....)))))....	chr6:26056481-26056700(-)$1	1	73	94	10.6046
(((((((......)))).).)	chr22:36684288-36684522(-)$1	1	122	143	11.9125
....(((......)))....)	chr9:140151242-140151515(+)$1	1	161	182	11.6206
.((((.(......).))))..	chr16:89869525-89869834(-)$1	1	37	58	11.9027
(((((((......)))))..)	chr12:6692401-6692619(-)$1	1	61	82	14.5512
(((((.(......))))))((	chr17:62498237-62498442(-)$1	1	132	153	13.2496
((((.((......)).)))))	chr17:1576557-1576833(-)$1	1	240	261	10.7038
))(((((......)))))..)	chr1:211847693-211847949(-)$1	1	158	179	12.0805
(((((((......)))))...	chr2:27607692-27607952(-)$1	1	139	160	15.3976
..(((((......)))))...	chr2:37441963-37442196(-)$1	1	9	30	14.2451
.((((((......).))))).	chr1:22078941-22079221(-)$1	1	245	266	13.4939
))(((((......))))))))	chr14:73577521-73577781(+)$1	1	237	258	11.7579
..(((((......))))))))	chr15:25615974-25616203(-)$1	1	135	156	13.8604

#PSSM
e : 0.17	d : 0.13	! : 0.10	: : 0.08	c : 0.08	# : 0.08	" : 0.06	b : 0.06	g : 0.04	+ : 0.04	[ : 0.04	= : 0.02	i : 0.02	h : 0.02	
e : 0.15	[ : 0.13	d : 0.10	! : 0.10	: : 0.08	c : 0.08	# : 0.08	" : 0.06	g : 0.04	+ : 0.04	= : 0.02	i : 0.02	a : 0.02	h : 0.02	
e : 0.69	d : 0.04	" : 0.04	g : 0.04	a : 0.04	# : 0.04	= : 0.02	! : 0.02	i : 0.02	[ : 0.02	
e : 0.67	d : 0.19	[ : 0.04	= : 0.02	i : 0.02	g : 0.02	# : 0.02	
e : 0.65	d : 0.19	c : 0.06	= : 0.02	i : 0.02	g : 0.02	[ : 0.02	
e : 0.60	d : 0.17	c : 0.06	[ : 0.06	= : 0.02	i : 0.02	g : 0.02	b : 0.02	
e : 0.58	d : 0.17	a : 0.08	c : 0.06	= : 0.02	i : 0.02	g : 0.02	b : 0.02	
o : 0.97	n : 0.02	
o : 0.97	n : 0.02	
o : 0.97	n : 0.02	
o : 0.97	n : 0.02	
o : 0.97	n : 0.02	
o : 0.97	e : 0.02	
e : 0.58	d : 0.17	a : 0.08	c : 0.06	= : 0.02	i : 0.02	g : 0.02	b : 0.02	
e : 0.60	d : 0.17	c : 0.06	] : 0.06	= : 0.02	i : 0.02	g : 0.02	b : 0.02	
e : 0.65	d : 0.19	c : 0.06	= : 0.02	i : 0.02	g : 0.02	] : 0.02	
e : 0.67	d : 0.19	] : 0.04	= : 0.02	i : 0.02	g : 0.02	4 : 0.02	
e : 0.67	4 : 0.08	] : 0.06	a : 0.04	3 : 0.02	= : 0.02	> : 0.02	i : 0.02	g : 0.02	d : 0.02	
] : 0.15	4 : 0.15	e : 0.13	3 : 0.06	5 : 0.06	2 : 0.06	: : 0.06	d : 0.04	f : 0.04	c : 0.04	F : 0.02	= : 0.02	> : 0.02	i : 0.02	D : 0.02	g : 0.02	a : 0.02	E : 0.02	
4 : 0.17	e : 0.15	3 : 0.06	d : 0.06	5 : 0.06	c : 0.06	2 : 0.06	b : 0.06	f : 0.04	: : 0.04	F : 0.02	= : 0.02	> : 0.02	i : 0.02	D : 0.02	g : 0.02	h : 0.02	] : 0.02	E : 0.02	
4 : 0.15	e : 0.15	d : 0.10	c : 0.10	5 : 0.06	b : 0.06	3 : 0.04	f : 0.04	F : 0.02	= : 0.02	> : 0.02	i : 0.02	D : 0.02	a : 0.02	2 : 0.02	: : 0.02	h : 0.02	C : 0.02	] : 0.02	E : 0.02	

#score	602.6720202765714
#seq	46
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_transcript_m3_run1.txt

#BEAR
FFa[ffffffgggggggqqqqqqqqggggggg333ffff	chr16:46941875-46942185(+)$1	310	59	98	14.8486
hhhhh"""ddddeeeeeqqqqqqqqeeeee22dddd444	chr8:100507998-100508256(+)$1	258	194	233	16.8729
+================qqqqqqqq==============	chr2:75884343-75884565(+)$1	222	133	172	19.6010
c]a===============ppppppp==============	chr17:79112597-79112924(-)$1	327	151	190	12.9932
hhhhhhhhhhhh[ddddqqqqqqqqdddd]hhhhhhhh]	chr17:41009506-41009812(+)$1	306	137	176	14.8244
hhhhhhhh[a[eeeeerrrrrrrrreeeee]a333hhhh	chr3:37903823-37904142(+)$1	319	40	79	13.7828
[bbbb===========ttttttttttt===========6	chr14:38247197-38247529(+)$1	332	132	171	13.2409
$$$$dddd[bb[eeeeeqqqqqqqqeeeee]bbdddd44	chr19:48257939-48258209(+)$1	270	190	229	15.8843
iiiiiiii[ccc!!cccqqqqqqqqcccccciiiiiiii	chr16:89980228-89980541(+)$1	313	3	42	18.9915
Biiiiiiiii!!ccc[aqqqqqqqqa]ccc22iiiiiii	chr19:18632079-18632363(-)$1	284	241	280	18.1768
==[a[ccc[a[ffffffqqqqqqqqffffff]a]ccc]a	chr20:25528973-25529332(-)$1	359	127	166	16.8512
dddd"""ggggggg!!aqqqqqqqqa22ggggggg333d	chr2:21266447-21266660(-)$1	213	23	62	17.7610
c[ccceeeee[ffffffqqqqqqqqffffffeeeee]cc	chr8:580294-580577(-)$1	283	174	213	15.3051
hhhhhhhh[bb[eeeeeqqqqqqqqeeeee]bb]hhhhh	chr22:21804703-21804984(+)$1	281	195	234	16.1478
"eeeeebbiiiiiiiiissssssssssiiiiiiiii]bb	chr1:971016-971307(+)$1	291	36	75	12.9784
c[a$$$$$iiiiiiiiiqqqqqqqqiiiiiiiii22acc	chr19:12845250-12845490(-)$1	240	33	72	17.3037
###dddd$$$$$eeeeerrrrrrrrreeeeedddd22hh	chr11:57076069-57076362(-)$1	293	21	60	12.7561
hhhhh!!dddd[eeeeeqqqqqqqqeeeeedddd22hhh	chr11:441521-441800(-)$1	279	78	117	16.6639
[dddd!!dddd[eeeeeqqqqqqqqeeeee]dddd22dd	chr16:2014349-2014550(-)$1	201	25	64	17.6140
==========ddddtttttttttttdddd333=======	chr1:44456461-44456867(+)$1	406	12	51	13.3232
f"""ccc"""gggggggqqqqqqqqggggggg]ccc22f	chr2:231743157-231743449(+)$1	292	57	96	17.2817
!!eeeee[dddd[bb[aqqqqqqqqa]bb22dddd]eee	chr4:39528800-39529041(-)$1	241	36	75	15.6971
===ggggggg[a[ddddxxxxxxxxxxxxxxxdddd]a]	chr3:141206424-141206736(+)$1	312	145	184	11.9966
dddd[dddd[dddd[bbqqqqqqqqbb]dddd]dddd]d	chr22:41753383-41753662(+)$1	279	27	66	14.7430
hhh[iiiiiiiiiddddqqqqqqqqdddd22iiiiiiii	chrM:14382-14585(-)$1	203	43	82	18.6166
=============[cccrrrrrrrrrccc]=========	chr21:47560665-47560909(-)$1	244	148	187	16.9776
!!gggggggbb!!ddddqqqqqqqqdddd22bb]ggggg	chr2:232320054-232320353(-)$1	299	20	59	17.2917
[bb[============ssssssssss============b	chr16:31202185-31202532(+)$1	347	52	91	15.8967
iiiiiiiii####ddddqqqqqqqqdddd333iiiiiii	chr17:36828198-36828514(-)$1	316	118	157	19.0559
cc####eeeee[eeeeeqqqqqqqqeeeee]eeeee22c	chr10:120900425-120900687(-)$1	262	46	85	17.1009
[dddd!!dddd[eeeeeqqqqqqqqeeeee]dddd22dd	chr16:2014423-2014646(-)$1	223	121	160	17.6140
ccc[bb!!ddddeeeeeqqqqqqqqeeeee]ddddbb]c	chr19:1271446-1271662(+)$1	216	127	166	16.8366
[bb============ttttttttttt============]	chr16:30537744-30538048(-)$1	304	232	271	14.4963
==[a[ccc[a[ffffffqqqqqqqqffffff]a]ccc]a	chr20:25529132-25529436(-)$1	304	231	270	16.8512
[bb[bb[ffffffbbbbqqqqqqqqbb]bb]ffffff]b	chr16:9185817-9186052(+)$1	235	187	226	13.2111
dddd####dddd[cccrrrrrrrrrcccdddd4444ddd	chr22:39917495-39917738(+)$1	243	137	176	13.1337
a[cccdddd[a[eeeeewwwwwwwwwwwwwweeeee]a]	chr20:25529874-25530184(-)$1	310	250	289	14.1733
"""dddda!!bb[cccqqqqqqqqcccbb22a]dddd22	chr13:113977174-113977413(+)$1	239	116	155	14.3100
ddddggggggg!!eeeeeooooooeeeee22ggggggg]	chr22:29695501-29695763(+)$1	262	65	104	11.2571
dddd"""ggggggg!!aqqqqqqqqa22ggggggg333d	chr2:21266460-21266740(-)$1	280	103	142	17.7610
f!!hhhhhhhh[bbcccqqqqqqqqccc]bbhhhhhhhh	chr9:140176026-140176338(+)$1	312	44	83	14.5098
gggg:dddd[cccddddqqqqqqqqdddd]ccc]ddddC	chr19:49965727-49966007(+)$1	280	72	111	14.0300
e!!a[ccc!!bbwwwwwwwwwwwwwwbb22ccc]a22ee	chr20:17639274-17639519(-)$1	245	107	146	13.4584
[ffffffdddd"""cccqqqqqqqqccc333dddd0000	chr13:113762007-113762315(+)$1	308	172	211	14.6189
:::==========!!bbqqqqqqqqbb]==========:	chr4:3514515-3514796(-)$1	281	241	280	15.1897
::eeeee"""gggggggrrrrrrrrrggggggg333eee	chr19:3490893-3491205(-)$1	312	264	303	12.1544
e!!ccc!!ccc[eeeeeqqqqqqqqeeeee]ccc22ccc	chr1:154918916-154919202(-)$1	286	104	143	18.3307
dddd####dddd[cccrrrrrrrrrcccdddd4444ddd	chr22:39917538-39917765(+)$1	227	94	133	13.1337
ddd[iiiiiiiii[cccqqqqqqqqccc]iiiiiiiii]	chr22:37904581-37904789(-)$1	208	133	172	19.1387

#otherMatches

#Seq PSSM
GUGGAGGUUUCAGUCCUGGGCUUGGGGGACUGGUAGAGC	chr16:46941875-46942185(+)$1	310	59	98	14.8486
AUUAAGACAUAGUCCUUUAUCAUUUGAGGAAUUUAUAAU	chr8:100507998-100508256(+)$1	258	194	233	16.8729
ccaaucuccuuccuggagggGUCUGUCCAGGAAGGAGAU	chr2:75884343-75884565(+)$1	222	133	172	19.6010
ggugcgcgcgcacguguggggggugugcaugugugugug	chr17:79112597-79112924(-)$1	327	151	190	12.9932
CCUGGCCUGGGUGGGGCAGGGCCUGGCCUGGUCCAGGCU	chr17:41009506-41009812(+)$1	306	137	176	14.8244
GGGUGCACAGGGCCCGGAGGGUGCGUGGGUGUGGGGUGC	chr3:37903823-37904142(+)$1	319	40	79	13.7828
gugcaugcuuaucagcugggguggugugcuggugggcau	chr14:38247197-38247529(+)$1	332	132	171	13.2409
GAAGGCUGUGCACAGGCUGGUGAGCGCCUGGGCCAGCGG	chr19:48257939-48258209(+)$1	270	190	229	15.8843
CUGUGGCCGCAGCUGGACAGGCCACUCCCUGGGCCACAG	chr16:89980228-89980541(+)$1	313	3	42	18.9915
UUGGGACGGGGAGUUUGGGCAGAAACUGACAGCUUGUCC	chr19:18632079-18632363(-)$1	284	241	280	18.1768
GGGUGCCGGGGUCAGCCGUGGGUGAGGCUGGGUGUGGGA	chr20:25528973-25529332(-)$1	359	127	166	16.8512
GCCACAGGGUCCAGGGCGAGUGGGGGGAUUGGACCAGCU	chr2:21266447-21266660(-)$1	213	23	62	17.7610
AGUCAGCUCUGUCUGUGUGGGUGGUCACAGGAGGGUGUG	chr8:580294-580577(-)$1	283	174	213	15.3051
GUGCCAGGCCUUAGAGCAGACAAGGGCUCUCAGCCCUGG	chr22:21804703-21804984(+)$1	281	195	234	16.1478
CCUUCUCCCUGUUCAGCAAGGGGUGGGGCUGGACAGAGG	chr1:971016-971307(+)$1	291	36	75	12.9784
GAGACGGGCGGAGCCUCAGGGCCGGGAGGCUCCGGGCCC	chr19:12845250-12845490(-)$1	240	33	72	17.3037
ACACCUGACCUUGGGCUGAGAAACAUGGCCCCAGGGGCA	chr11:57076069-57076362(-)$1	293	21	60	12.7561
GGGGGUUGGAAGUGCUGGAGGCGGGCGGCGUUCCUCCCU	chr11:441521-441800(-)$1	279	78	117	16.6639
GGGCCGGGGUCGCGGCCGUGGACGGGGCCGGGGCCGAGG	chr16:2014349-2014550(-)$1	201	25	64	17.6140
GUCCCCUAGGGCCUGGAAGGGUGGGAGGUAUGUCUAGGG	chr1:44456461-44456867(+)$1	406	12	51	13.3232
UGCACAAUUAGAAAAGUCCUCAGAAGCUUUUUCUUGGAG	chr2:231743157-231743449(+)$1	292	57	96	17.2817
GAGCGGGGCGCGGGUGGAGAAGCUGCGGCGGCGCGGCCC	chr4:39528800-39529041(-)$1	241	36	75	15.6971
CUGGGCUCGGCGAGCCUGGGAGAGGUUGAAAAAGGCGCC	chr3:141206424-141206736(+)$1	312	145	184	11.9966
CCACCGCCACCACUGGGGAGUAGGGCCAGGUGUUGGCCG	chr22:41753383-41753662(+)$1	279	27	66	14.7430
AAUUUUGGGGGAGGUUAUAUGGGUUUAAUAGUUUUUUUA	chrM:14382-14585(-)$1	203	43	82	18.6166
UUACGCUCCCUGUGAGCAAUGUGAAGGCUGACGGGGAGU	chr21:47560665-47560909(-)$1	244	148	187	16.9776
UUGGUUUUGUAGACUUCAACAGUGAGGAGGAUGCCAAAG	chr2:232320054-232320353(-)$1	299	20	59	17.2917
ACAUAGGGGAAUGGGAAUAUGAUAGAUCUUGUUUCUUUU	chr16:31202185-31202532(+)$1	347	52	91	15.8967
GGCAGGGCCAGGGGAUUAGGUUUGGGGUCAGAGGUUCUG	chr17:36828198-36828514(-)$1	316	118	157	19.0559
UGACAAGGCGACUUCAGAUUCCAUACUGAGAUCGUUCCC	chr10:120900425-120900687(-)$1	262	46	85	17.1009
GGGCCGGGGUCGCGGCCGUGGACGGGGCCGGGGCCGAGG	chr16:2014423-2014646(-)$1	223	121	160	17.6140
GGAACCGGUUCGAGUCCAGGAGUGGGGGCUACGGAGGCU	chr19:1271446-1271662(+)$1	216	127	166	16.8366
GGGCCCGCGGCUCGGGGCAACCGAGGCCGGGUCGCGGGA	chr16:30537744-30538048(-)$1	304	232	271	14.4963
GGGUGCCGGGGUCAGCCGUGGGUGAGGCUGGGUGUGGGA	chr20:25529132-25529436(-)$1	304	231	270	16.8512
ACGAGCAGCUGCCCCCCGAGCUGCAGGAGGAGGCGGCGG	chr16:9185817-9186052(+)$1	235	187	226	13.2111
GCUGGCUGUGGAUGGGUUGGUCAGUCCCUCCAACAACAG	chr22:39917495-39917738(+)$1	243	137	176	13.1337
ugaggcugggugugggagguguggcuguggGUCCCGGGG	chr20:25529874-25530184(-)$1	310	250	289	14.1733
AAAGCCUCUGGCCGUCACACGUAGGACGCAUGAAGGUCA	chr13:113977174-113977413(+)$1	239	116	155	14.3100
CGCCCUGCUAUUCUCACCUUAGGUGGUGAUCGUGGCAGA	chr22:29695501-29695763(+)$1	262	65	104	11.2571
GCCACAGGGUCCAGGGCGAGUGGGGGGAUUGGACCAGCU	chr2:21266460-21266740(-)$1	280	103	142	17.7610
CCCAGGGCGGGAGCGCUAGCGAGAGGGCUGCCCCGUCCU	chr9:140176026-140176338(+)$1	312	44	83	14.5098
AUCUCCUGAUGCCCCUUUUCCUCACAGGGUGGCCUCAGG	chr19:49965727-49966007(+)$1	280	72	111	14.0300
GAAGGGUCCCCCAACCAAGGCAAAAAGGCAGACGCAGCU	chr20:17639274-17639519(-)$1	245	107	146	13.4584
GGGGGCGUGGGUGUUCCGGAGGCGAGGGUAUCCCAGAAG	chr13:113762007-113762315(+)$1	308	172	211	14.6189
GCAGCCGCUGCCGUCGCGACACAGGGCUUGGUGGUGGUA	chr4:3514515-3514796(-)$1	281	241	280	15.1897
GAGGCCUGGGUAGGGACAGGGUGGUGGUCCCUGAGUGGG	chr19:3490893-3491205(-)$1	312	264	303	12.1544
GGGUGUGCCUCAGUGGGGGUAGAGGCCCACAGGGUGACA	chr1:154918916-154919202(-)$1	286	104	143	18.3307
GCUGGCUGUGGAUGGGUUGGUCAGUCCCUCCAACAACAG	chr22:39917538-39917765(+)$1	227	94	133	13.1337
CGCAUCCUGCUGGACAUCCUAGAGCAUGACUGGCGGGAG	chr22:37904581-37904789(-)$1	208	133	172	19.1387

#DB
(((.(((((((((((((........)))))))...))))	chr16:46941875-46942185(+)$1	1	59	98	14.8486
(((((...(((((((((........)))))..))))...	chr8:100507998-100508256(+)$1	1	194	233	16.8729
.((((((((((((((((........))))))))))))))	chr2:75884343-75884565(+)$1	1	133	172	19.6010
).)(((((((((((((((.......))))))))))))))	chr17:79112597-79112924(-)$1	1	151	190	12.9932
((((((((((((.((((........)))).)))))))).	chr17:41009506-41009812(+)$1	1	137	176	14.8244
((((((((.(.(((((.........))))).)...))))	chr3:37903823-37904142(+)$1	1	40	79	13.7828
.(((((((((((((((...........))))))))))).	chr14:38247197-38247529(+)$1	1	132	171	13.2409
....((((.((.(((((........))))).))))))..	chr19:48257939-48258209(+)$1	1	190	229	15.8843
((((((((.(((..(((........))))))))))))))	chr16:89980228-89980541(+)$1	1	3	42	18.9915
)(((((((((..(((.(........).)))..)))))))	chr19:18632079-18632363(-)$1	1	241	280	18.1768
((.(.(((.(.((((((........)))))).).))).)	chr20:25528973-25529332(-)$1	1	127	166	16.8512
((((...(((((((..(........)..)))))))...)	chr2:21266447-21266660(-)$1	1	23	62	17.7610
(.((((((((.((((((........))))))))))).))	chr8:580294-580577(-)$1	1	174	213	15.3051
((((((((.((.(((((........))))).)).)))))	chr22:21804703-21804984(+)$1	1	195	234	16.1478
.((((((((((((((((..........))))))))).))	chr1:971016-971307(+)$1	1	36	75	12.9784
(.(.....(((((((((........)))))))))..)))	chr19:12845250-12845490(-)$1	1	33	72	17.3037
...((((.....(((((.........)))))))))..))	chr11:57076069-57076362(-)$1	1	21	60	12.7561
(((((..((((.(((((........)))))))))..)))	chr11:441521-441800(-)$1	1	78	117	16.6639
.((((..((((.(((((........))))).))))..))	chr16:2014349-2014550(-)$1	1	25	64	17.6140
((((((((((((((...........))))...)))))))	chr1:44456461-44456867(+)$1	1	12	51	13.3232
(...(((...(((((((........))))))).)))..)	chr2:231743157-231743449(+)$1	1	57	96	17.2817
..(((((.((((.((.(........).))..)))).)))	chr4:39528800-39529041(-)$1	1	36	75	15.6971
((((((((((.(.((((...............)))).).	chr3:141206424-141206736(+)$1	1	145	184	11.9966
((((.((((.((((.((........)).)))).)))).)	chr22:41753383-41753662(+)$1	1	27	66	14.7430
(((.(((((((((((((........))))..))))))))	chrM:14382-14585(-)$1	1	43	82	18.6166
(((((((((((((.(((.........))).)))))))))	chr21:47560665-47560909(-)$1	1	148	187	16.9776
..(((((((((..((((........))))..)).)))))	chr2:232320054-232320353(-)$1	1	20	59	17.2917
.((.((((((((((((..........)))))))))))))	chr16:31202185-31202532(+)$1	1	52	91	15.8967
(((((((((....((((........))))...)))))))	chr17:36828198-36828514(-)$1	1	118	157	19.0559
((....(((((.(((((........))))).)))))..)	chr10:120900425-120900687(-)$1	1	46	85	17.1009
.((((..((((.(((((........))))).))))..))	chr16:2014423-2014646(-)$1	1	121	160	17.6140
(((.((..(((((((((........))))).)))))).)	chr19:1271446-1271662(+)$1	1	127	166	16.8366
.((((((((((((((...........)))))))))))).	chr16:30537744-30538048(-)$1	1	232	271	14.4963
((.(.(((.(.((((((........)))))).).))).)	chr20:25529132-25529436(-)$1	1	231	270	16.8512
.((.((.((((((((((........)).)).)))))).)	chr16:9185817-9186052(+)$1	1	187	226	13.2111
((((....((((.(((.........)))))))....)))	chr22:39917495-39917738(+)$1	1	137	176	13.1337
(.(((((((.(.(((((..............))))).).	chr20:25529874-25530184(-)$1	1	250	289	14.1733
...(((((..((.(((........)))))..).))))..	chr13:113977174-113977413(+)$1	1	116	155	14.3100
(((((((((((..(((((......)))))..))))))).	chr22:29695501-29695763(+)$1	1	65	104	11.2571
((((...(((((((..(........)..)))))))...)	chr2:21266460-21266740(-)$1	1	103	142	17.7610
(..((((((((.(((((........))).))))))))))	chr9:140176026-140176338(+)$1	1	44	83	14.5098
)))).((((.(((((((........)))).))).))))(	chr19:49965727-49966007(+)$1	1	72	111	14.0300
(..(.(((..((..............))..))).)..))	chr20:17639274-17639519(-)$1	1	107	146	13.4584
.((((((((((...(((........)))...))))....	chr13:113762007-113762315(+)$1	1	172	211	14.6189
...((((((((((..((........)).)))))))))).	chr4:3514515-3514796(-)$1	1	241	280	15.1897
..(((((...(((((((.........)))))))...)))	chr19:3490893-3491205(-)$1	1	264	303	12.1544
(..(((..(((.(((((........))))).)))..)))	chr1:154918916-154919202(-)$1	1	104	143	18.3307
((((....((((.(((.........)))))))....)))	chr22:39917538-39917765(+)$1	1	94	133	13.1337
(((.(((((((((.(((........))).))))))))).	chr22:37904581-37904789(-)$1	1	133	172	19.1387

#PSSM
[ : 0.14	d : 0.14	h : 0.12	c : 0.10	= : 0.10	i : 0.04	" : 0.04	f : 0.04	! : 0.04	e : 0.04	: : 0.04	F : 0.02	+ : 0.02	$ : 0.02	B : 0.02	# : 0.02	a : 0.02	g : 0.02	
d : 0.18	h : 0.12	= : 0.12	! : 0.10	b : 0.08	i : 0.06	[ : 0.06	" : 0.04	c : 0.04	: : 0.04	F : 0.02	] : 0.02	$ : 0.02	e : 0.02	# : 0.02	g : 0.02	f : 0.02	
d : 0.18	h : 0.12	= : 0.08	b : 0.08	a : 0.06	i : 0.06	c : 0.06	e : 0.06	! : 0.06	[ : 0.04	# : 0.04	" : 0.04	g : 0.04	$ : 0.02	f : 0.02	: : 0.02	
d : 0.20	[ : 0.12	h : 0.12	= : 0.12	i : 0.06	a : 0.06	c : 0.06	e : 0.06	g : 0.06	$ : 0.04	b : 0.02	" : 0.02	# : 0.02	f : 0.02	
= : 0.14	h : 0.12	d : 0.10	i : 0.10	[ : 0.08	c : 0.08	b : 0.06	e : 0.06	g : 0.06	# : 0.06	f : 0.04	" : 0.04	$ : 0.02	: : 0.02	
= : 0.16	d : 0.12	i : 0.10	c : 0.10	h : 0.08	e : 0.08	" : 0.06	! : 0.06	g : 0.06	# : 0.06	f : 0.04	b : 0.04	$ : 0.02	
= : 0.16	d : 0.12	i : 0.10	! : 0.10	h : 0.08	c : 0.08	e : 0.08	" : 0.06	g : 0.06	f : 0.04	# : 0.04	b : 0.02	$ : 0.02	[ : 0.02	
= : 0.16	d : 0.16	i : 0.10	g : 0.10	h : 0.08	" : 0.06	c : 0.06	f : 0.04	e : 0.04	$ : 0.04	! : 0.04	# : 0.04	b : 0.02	[ : 0.02	a : 0.02	
d : 0.24	= : 0.16	[ : 0.12	i : 0.12	g : 0.10	f : 0.04	h : 0.04	e : 0.04	" : 0.04	! : 0.04	$ : 0.02	c : 0.02	
d : 0.18	= : 0.16	i : 0.10	g : 0.08	a : 0.06	b : 0.06	[ : 0.06	f : 0.04	h : 0.04	c : 0.04	e : 0.04	" : 0.04	! : 0.04	$ : 0.02	# : 0.02	
d : 0.22	= : 0.14	g : 0.12	[ : 0.10	b : 0.10	i : 0.08	c : 0.06	h : 0.04	! : 0.02	$ : 0.02	# : 0.02	e : 0.02	f : 0.02	a : 0.02	
[ : 0.18	d : 0.14	= : 0.14	g : 0.10	f : 0.08	i : 0.08	! : 0.06	c : 0.04	b : 0.04	h : 0.02	e : 0.02	$ : 0.02	a : 0.02	# : 0.02	" : 0.02	
e : 0.24	= : 0.14	[ : 0.12	g : 0.10	f : 0.08	i : 0.08	! : 0.06	c : 0.04	d : 0.04	# : 0.02	b : 0.02	w : 0.02	" : 0.02	
e : 0.26	d : 0.16	g : 0.10	= : 0.10	c : 0.08	f : 0.06	b : 0.06	! : 0.04	i : 0.04	[ : 0.04	w : 0.02	" : 0.02	
e : 0.26	c : 0.18	d : 0.12	= : 0.10	g : 0.06	f : 0.06	! : 0.06	i : 0.04	b : 0.04	t : 0.02	[ : 0.02	w : 0.02	
e : 0.26	c : 0.16	d : 0.12	= : 0.08	g : 0.06	f : 0.06	b : 0.06	[ : 0.04	! : 0.04	i : 0.04	t : 0.04	w : 0.02	
e : 0.24	d : 0.12	c : 0.10	a : 0.08	g : 0.06	r : 0.06	t : 0.06	f : 0.06	b : 0.06	= : 0.04	i : 0.04	s : 0.02	q : 0.02	w : 0.02	
q : 0.67	r : 0.12	t : 0.06	s : 0.04	w : 0.04	= : 0.02	x : 0.02	e : 0.02	
q : 0.67	r : 0.12	t : 0.06	s : 0.04	w : 0.04	p : 0.02	x : 0.02	o : 0.02	
q : 0.67	r : 0.12	t : 0.06	s : 0.04	w : 0.04	p : 0.02	x : 0.02	o : 0.02	
q : 0.67	r : 0.12	t : 0.06	s : 0.04	w : 0.04	p : 0.02	x : 0.02	o : 0.02	
q : 0.67	r : 0.12	t : 0.06	s : 0.04	w : 0.04	p : 0.02	x : 0.02	o : 0.02	
q : 0.67	r : 0.12	t : 0.06	s : 0.04	w : 0.04	p : 0.02	x : 0.02	o : 0.02	
q : 0.67	r : 0.12	t : 0.06	s : 0.04	w : 0.04	p : 0.02	x : 0.02	o : 0.02	
q : 0.65	r : 0.12	t : 0.06	s : 0.04	w : 0.04	p : 0.02	x : 0.02	c : 0.02	e : 0.02	
e : 0.22	c : 0.14	d : 0.12	a : 0.08	f : 0.06	r : 0.06	b : 0.06	g : 0.04	= : 0.04	t : 0.04	s : 0.04	w : 0.04	i : 0.02	x : 0.02	
e : 0.24	c : 0.16	d : 0.12	= : 0.08	b : 0.08	g : 0.06	f : 0.06	] : 0.04	2 : 0.04	t : 0.02	s : 0.02	i : 0.02	x : 0.02	w : 0.02	
e : 0.24	c : 0.16	d : 0.12	= : 0.10	g : 0.06	f : 0.06	b : 0.06	] : 0.06	2 : 0.04	i : 0.04	x : 0.02	w : 0.02	
e : 0.24	d : 0.18	= : 0.12	g : 0.10	c : 0.06	f : 0.06	b : 0.06	i : 0.04	] : 0.04	x : 0.02	w : 0.02	2 : 0.02	3 : 0.02	
e : 0.22	= : 0.12	2 : 0.12	g : 0.10	] : 0.06	f : 0.06	i : 0.06	3 : 0.06	d : 0.06	c : 0.04	b : 0.04	x : 0.02	w : 0.02	
] : 0.18	2 : 0.14	= : 0.14	g : 0.10	d : 0.08	c : 0.06	f : 0.06	i : 0.06	3 : 0.06	h : 0.02	e : 0.02	x : 0.02	w : 0.02	b : 0.02	
d : 0.20	= : 0.14	g : 0.12	i : 0.10	b : 0.06	e : 0.06	c : 0.06	2 : 0.04	h : 0.04	a : 0.04	] : 0.04	3 : 0.04	x : 0.02	f : 0.02	
d : 0.18	= : 0.16	i : 0.14	g : 0.08	b : 0.06	e : 0.06	] : 0.06	c : 0.06	3 : 0.04	h : 0.04	a : 0.04	4 : 0.04	f : 0.02	
d : 0.24	= : 0.16	i : 0.14	] : 0.12	3 : 0.06	g : 0.06	e : 0.06	h : 0.04	c : 0.04	4 : 0.04	f : 0.02	
d : 0.24	= : 0.16	i : 0.12	g : 0.08	3 : 0.06	h : 0.06	c : 0.06	e : 0.06	2 : 0.06	4 : 0.04	f : 0.02	a : 0.02	
= : 0.16	2 : 0.14	d : 0.12	i : 0.12	h : 0.08	c : 0.06	3 : 0.06	e : 0.06	f : 0.04	g : 0.04	4 : 0.04	] : 0.02	b : 0.02	0 : 0.02	
= : 0.16	d : 0.12	2 : 0.12	h : 0.10	i : 0.10	] : 0.08	c : 0.06	f : 0.04	3 : 0.04	e : 0.04	g : 0.04	4 : 0.02	a : 0.02	b : 0.02	0 : 0.02	
= : 0.16	h : 0.12	i : 0.10	] : 0.10	d : 0.10	c : 0.06	2 : 0.06	e : 0.06	4 : 0.04	3 : 0.04	a : 0.04	g : 0.04	f : 0.02	b : 0.02	0 : 0.02	
d : 0.14	] : 0.12	h : 0.10	c : 0.10	= : 0.08	i : 0.08	b : 0.06	e : 0.06	f : 0.04	4 : 0.04	a : 0.04	6 : 0.02	g : 0.02	2 : 0.02	C : 0.02	0 : 0.02	: : 0.02	

#score	764.7896831045674
#seq	49
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF844VZT_HNRNPU_transcript_m2_run2.txt

#BEAR
f[a[a!!bb!!eeeeemmmmeeeee]bb22a22a	chr19:39331336-39331642(-)$1	306	207	241	11.3622
44cccffffff[eeeeellleeeee333ffffff	chr21:45727923-45728227(+)$1	304	116	150	10.9639
ggg[a!!dddd[accclllccc]a]dddd22a]g	chr16:67206056-67206310(+)$1	254	44	78	10.5797
####dddd!!a[bboooooobb]a22dddd333=	chr1:44465393-44465686(-)$1	293	51	85	12.6401
dddd"""dddd[cccnnnnncccdddd4444ddd	chr3:9472611-9472874(+)$1	263	36	70	10.9324
=======[ddddddddmmmmdddd22dddd]===	chr19:34877534-34877743(+)$1	209	138	172	11.1277
fff####a[ffffffnnnnnffffff]a4444ff	chr20:49191535-49191836(+)$1	301	45	79	10.5083
eeeee[eeeeecccooooooccc333eeeee]ee	chr19:55856505-55856763(+)$1	258	151	185	11.5289
cc[a[ffffff!!bboooooobb4444ffffff]	chr10:35694148-35694418(+)$1	270	126	160	10.6200
[bb[ggggggg[cccnnnnnccc22ggggggg]b	chr10:35652456-35652741(+)$1	285	53	87	10.9911
gggggg[ccc!!cccnnnnnccc333ccc]gggg	chr17:80420693-80420954(+)$1	261	221	255	13.0062
cc"""==========oooooo==========333	chr16:81522772-81523102(+)$1	330	275	309	13.6764
c[ccc!!a[eeeeeooooooeeeee]a333ccc]	chr2:97560073-97560311(-)$1	238	20	54	14.7218
gggggccc[eeeeeooooooeeeee]ccc]gggg	chr6:39194702-39194984(-)$1	282	109	143	13.9294
ggggggg[bb!!cccoooooocccbb]ggggggg	chr11:2711454-2711726(-)$1	272	3	37	10.8400
ff####bb!!eeeeeooooooeeeee22bb333f	chr9:117134114-117134386(-)$1	272	126	160	13.5512
ccc[gggggggeeeeemmmmeeeee22ggggggg	chr2:170684725-170685006(+)$1	281	181	215	12.0955
cccffffff"""eeeeellleeeee333ffffff	chr16:89555910-89556145(-)$1	235	188	222	11.8725
ggggg[dddd!!ddddllldddd22ddddggggg	chr22:26146669-26147004(+)$1	335	215	249	10.5731
======[a!!eeeeemmmmeeeee22a]======	chr7:100027469-100027794(+)$1	325	254	288	12.6407
c$$$$$ccc!!ddddmmmmdddd4444ccc4444	chr19:34874574-34874845(+)$1	271	109	143	10.9813
=======[bb[ddddnnnnndddd22bb22====	chr9:117134458-117134715(-)$1	257	35	69	11.8484
ddddbba[dddd[annnnna]dddd]a]bb]ddd	chr8:11665544-11665812(+)$1	268	175	209	8.8619
ggggggg!!eeeeeooooooeeeee4444ggggg	chr15:88228888-88229204(-)$1	316	192	226	14.3958
ccc####eeeeeeeeeellleeeee]eeeee555	chr7:30612667-30612957(-)$1	290	193	227	10.2661
hhh!!dddd!!eeeeellleeeee22dddd]hhh	chr3:9438739-9439025(-)$1	286	245	279	11.8150
cc"""ffffff[cccnnnnnccc333ffffff55	chr11:2714340-2714595(-)$1	255	154	188	10.4911
ccc[ccc!!bbeeeeemmmmeeeee]bb22ccc]	chr8:1733821-1734098(+)$1	277	37	71	10.9561
[dddd####bb[eeeeellleeeee22bb333dd	chr19:34877711-34877979(+)$1	268	83	117	11.4576
bb"""dddd[eeeeennnnneeeee333dddd22	chr3:47010484-47010756(-)$1	272	108	142	13.8430
ddd[dddd####eeeeellleeeee]dddd]ddd	chrX:41194443-41194687(+)$1	244	189	223	11.8823
ccdddd[a[eeeeeooooooeeeee]a]ddddBB	chr3:100428749-100429007(+)$1	258	93	127	11.3708
)))eeeee"""ddddnnnnndddd333eeeee]a	chr8:41526179-41526500(-)$1	321	21	55	11.1756
:::ccc####eeeeennnnneeeee4444cccee	chr1:36849029-36849319(-)$1	290	172	206	10.8862
a[a"""bb!!eeeeeooooooeeeee22bb333a	chr1:43427177-43427477(+)$1	300	153	187	13.8415
fffff[dddd"""cccmmmmccc333dddd333f	chr1:43398775-43399051(-)$1	276	204	238	10.9061
fff[cccbb!!ddddoooooodddd22bb]ccc2	chrX:73068201-73068438(-)$1	237	82	116	11.9068
ffffa!!ccc[aooooooa333ccc22a4444ff	chr15:64753587-64753871(+)$1	284	12	46	10.1638
ccc!!dddd"""cccnnnnncccdddd]cccfff	chr10:126790280-126790562(-)$1	282	187	221	11.9144
ddd!!bb"""eeeeennnnneeeee22bb4444d	chr15:66970969-66971269(+)$1	300	153	187	13.4753
cc[bb[ddddddddoooooodddd22dddd]bb]	chr11:126140156-126140473(+)$1	317	228	262	12.1249
cc"""ccc[ccc[bboooooobbccc]ccc]ccc	chr19:34881112-34881363(+)$1	251	205	239	11.2184
ggggggg!!eeeeeooooooeeeee]ggggggg:	chr7:120836198-120836486(+)$1	288	17	51	12.9462
eeggggggg[ddddoooooodddd333ggggggg	chr11:2687827-2688113(-)$1	286	61	95	13.1363
ccc"""eeeeecccooooooccc]eeeee22ccc	chr15:89448568-89448816(-)$1	248	196	230	12.2578
####a[ccc"""cccnnnnnccc333ccc]a22i	chr9:125877289-125877571(-)$1	282	173	207	13.4581
dd!!eeeee!!ddddoooooodddd333eeeeed	chr12:109124206-109124496(-)$1	290	101	135	12.5993
cc!!dddd####ddddmmmmdddd333dddd22c	chr15:69098502-69098825(-)$1	323	88	122	11.8351
::dddd"""eeeeeooooooeeeee]ddddffff	chr15:27368449-27368704(+)$1	255	104	138	11.3026
dddd[dddd[acccooooooccc]a]dddddddd	chrX:154012586-154012858(-)$1	272	54	88	11.4365
c[bb[dddd[eeeeennnnneeeee]ddddbbcc	chr4:99849526-99849815(-)$1	289	153	187	12.4585
ccc[a[ddddeeeeennnnneeeee]dddd]a]c	chr11:2719720-2719949(-)$1	229	184	218	14.1657
::cccdddd[a[a[annnnna]a]a]dddd]ccc	chr8:41610025-41610330(-)$1	305	94	128	10.1390
###ccceeeee[eeeeellleeeee4444eeeee	chr11:118308410-118308684(+)$1	274	227	261	11.6973

#otherMatches

#Seq PSSM
CACAGAACAAGGCCAGCCCUUUGGUAUGAGCAGG	chr19:39331336-39331642(-)$1	306	207	241	11.3622
GGGCUGUCUCUGGGUCCUGAGGGCUGUGAGGGGC	chr21:45727923-45728227(+)$1	304	116	150	10.9639
AGGGUGGGGGUGGGCUGAGGGCAUGGUUCAAGGC	chr16:67206056-67206310(+)$1	254	44	78	10.5797
GAAUGGUCCAGGGGCCAAAACCGUAUGACUUGGC	chr1:44465393-44465686(-)$1	293	51	85	12.6401
ggaaagaaugucaguAACUAGCUACAUACCAUUC	chr3:9472611-9472874(+)$1	263	36	70	10.9324
UGGGGUCUUGCAGGUGAGGUCAUUGGUGCGUGGU	chr19:34877534-34877743(+)$1	209	138	172	11.1277
UCACUCCAGUUUCAUAGCUAGUGAAAGUUUUCUG	chr20:49191535-49191836(+)$1	301	45	79	10.5083
GGCUUUGAUCCGGCAGCAAGGCCUUGGGGUCCGG	chr19:55856505-55856763(+)$1	258	151	185	11.5289
cuaugcuuguggacuaagaaggggagauacaagg	chr10:35694148-35694418(+)$1	270	126	160	10.6200
GACUGAAUCAGUGAGAUCAGCUCUGUUGGUUCUG	chr10:35652456-35652741(+)$1	285	53	87	10.9911
aucccagguugagugggcugcacaGAGACAUGGG	chr17:80420693-80420954(+)$1	261	221	255	13.0062
GUACAUCACUUGGGUGCAGGGGCUUGGGUGAGAG	chr16:81522772-81523102(+)$1	330	275	309	13.6764
GGUCUGGGGAUAUGAGUGGGUAUGUGUGGGGGGG	chr2:97560073-97560311(-)$1	238	20	54	14.7218
GGUUAGGCAGCCGGGUGCAGCUGGUGGUCAUAGC	chr6:39194702-39194984(-)$1	282	109	143	13.9294
GACUGGGCCCAGUGGCUGUUCCCAGGACCCAGUC	chr11:2711454-2711726(-)$1	272	3	37	10.8400
GCUUGAGGGGAGCUGAGAUUCCAGCUGGCCAGUG	chr9:117134114-117134386(-)$1	272	126	160	13.5512
CUUGUUGGGAAAGGCUGUAAAGCCUGGUUCUUGG	chr2:170684725-170685006(+)$1	281	181	215	12.0955
GCGGCUCUCGGGCUCCGAGCCGGAGGGGGAGGGC	chr16:89555910-89556145(-)$1	235	188	222	11.8725
cACACGUGGCAGUCCAUGCUGGGAGGCcagugug	chr22:26146669-26147004(+)$1	335	215	249	10.5731
GCGGCCCCACGGUGCCACCGCACCAAGAGGCCGC	chr7:100027469-100027794(+)$1	325	254	288	12.6407
UAAAGGGCCAGAGACCUGGGUCUACAGGGCAGAC	chr19:34874574-34874845(+)$1	271	109	143	10.9813
GGAGCACAGCUGGGGUAUCUCCUCUCGUGGGUGC	chr9:117134458-117134715(-)$1	257	35	69	11.8484
uuucagcggagcccgaguagaguuuggucuaggg	chr8:11665544-11665812(+)$1	268	175	209	8.8619
AGGUUGGAAUGAGGAUGCUGUCUCAGAGACCAGC	chr15:88228888-88229204(-)$1	316	192	226	14.3958
GGAUCAUGUUUGuuaaaucuuuuaaccagauuua	chr7:30612667-30612957(-)$1	290	193	227	10.2661
GUAUUCUGGUUGGAGUAAAGCUCCUGUCAGUUAC	chr3:9438739-9439025(-)$1	286	245	279	11.8150
AAAAGGGUCUGACUGGAACGCAGAGCCAGACCAG	chr11:2714340-2714595(-)$1	255	154	188	10.4911
GUCAGAUUACGGUGGCACAGGCUGCGUGGGGUUA	chr8:1733821-1734098(+)$1	277	37	71	10.9561
ACAGGUAGGCAGAGAUGUUCCAUUUGAUGAGGUC	chr19:34877711-34877979(+)$1	268	83	117	11.4576
ACAGAGGCAGUGGGUGAGAGGCCUAGUAUGCUGG	chr3:47010484-47010756(-)$1	272	108	142	13.8430
GAAUCUUGCAAUGGGUCCCAGGCCCCCGGGUUUU	chrX:41194443-41194687(+)$1	244	189	223	11.8823
GCCUGGGGGGCUCCGGGAGGGGAGUGCGCCAGCU	chr3:100428749-100429007(+)$1	258	93	127	11.3708
ggacugcugaGUGGGAAGGGCCUGGAGAGCAGAA	chr8:41526179-41526500(-)$1	321	21	55	11.1756
CAAACCUAGGCUUCUGAGAGAGGAGAGUUGGUGC	chr1:36849029-36849319(-)$1	290	172	206	10.8862
gggaaggccauucucagcagagagaagagcaugu	chr1:43427177-43427477(+)$1	300	153	187	13.8415
CAGUGGGGUGAUUUUAGGGAUGAUGACACCAAGc	chr1:43398775-43399051(-)$1	276	204	238	10.9061
CAUUGAUGUUCAUAAUUGUAUUUGUCCACGAUCU	chrX:73068201-73068438(-)$1	237	82	116	11.9068
UGGGCCUGGACCUCAACUGCUAUCCUUGUACCCC	chr15:64753587-64753871(+)$1	284	12	46	10.1638
GGCUUAGCAUGUGGGAGAUGCCCUGCUCGCCUGG	chr10:126790280-126790562(-)$1	282	187	221	11.9144
accaagcccagacaggguaacuguucagccccag	chr15:66970969-66971269(+)$1	300	153	187	13.4753
cuggucugggggucaggaaaggcuuucccaagca	chr11:126140156-126140473(+)$1	317	228	262	12.1249
CGGUAAGGGGCUCUGGGUCUGCAAGUGUCUAUGG	chr19:34881112-34881363(+)$1	251	205	239	11.2184
UUUGCUAUUGGCUGCUGGAAUAGUCCUGGUGAAU	chr7:120836198-120836486(+)$1	288	17	51	12.9462
CCUUUCUGUCCUUUCCCACCAAAGUUUACAGGGA	chr11:2687827-2688113(-)$1	286	61	95	13.1363
guauucccagggccuagaauggugucugguuuau	chr15:89448568-89448816(-)$1	248	196	230	12.2578
AGUCUGCAGUCACUUCUUAAAAGGCCCUGGGUGG	chr9:125877289-125877571(-)$1	282	173	207	13.4581
UGUUUCCCUAAUAGCGGGGCAGCUGGCGAGGGAC	chr12:109124206-109124496(-)$1	290	101	135	12.5993
GUGUAGGCACUCAGGAGUCUUCCUUCAGUUUCAG	chr15:69098502-69098825(-)$1	323	88	122	11.8351
aagaggccugugggaacucacucacuccuuccag	chr15:27368449-27368704(+)$1	255	104	138	11.3026
ugacaccaggucucuaucuugagcagcuggguca	chrX:154012586-154012858(-)$1	272	54	88	11.4365
UUCGACCUCGCUUAGGGGAGUUGAGAGGGGCGAG	chr4:99849526-99849815(-)$1	289	153	187	12.4585
UCUGAGUUGGGGGUGGUGAUCACCUGCCAGGUGA	chr11:2719720-2719949(-)$1	229	184	218	14.1657
agcaggcuugggugauggauuggauggggcacug	chr8:41610025-41610330(-)$1	305	94	128	10.1390
ACUGAGGCAGCAUCCUCCCAGGGGAAGCAGCUGC	chr11:118308410-118308684(+)$1	274	227	261	11.6973

#DB
(.(.(..((..(((((....))))).))..)..)	chr19:39331336-39331642(-)$1	1	207	241	11.3622
..)))((((((.(((((...)))))...))))))	chr21:45727923-45728227(+)$1	1	116	150	10.9639
(((.(..((((.((((...))).).))))..).)	chr16:67206056-67206310(+)$1	1	44	78	10.5797
....((((..(.((......)).)..))))...)	chr1:44465393-44465686(-)$1	1	51	85	12.6401
((((...((((.(((.....)))))))....)))	chr3:9472611-9472874(+)$1	1	36	70	10.9324
(((((((.((((((((....))))..)))).)))	chr19:34877534-34877743(+)$1	1	138	172	11.1277
(((....(.((((((.....)))))).)....))	chr20:49191535-49191836(+)$1	1	45	79	10.5083
(((((.((((((((......)))...))))).))	chr19:55856505-55856763(+)$1	1	151	185	11.5289
((.(.((((((..((......))....)))))).	chr10:35694148-35694418(+)$1	1	126	160	10.6200
.((.(((((((.(((.....)))..))))))).)	chr10:35652456-35652741(+)$1	1	53	87	10.9911
((((((.(((..(((.....)))...))).))))	chr17:80420693-80420954(+)$1	1	221	255	13.0062
((...((((((((((......))))))))))...	chr16:81522772-81523102(+)$1	1	275	309	13.6764
(.(((..(.(((((......))))).)...))).	chr2:97560073-97560311(-)$1	1	20	54	14.7218
((((((((.(((((......))))).))).))))	chr6:39194702-39194984(-)$1	1	109	143	13.9294
(((((((.((..(((......))))).)))))))	chr11:2711454-2711726(-)$1	1	3	37	10.8400
((....((..(((((......)))))..))...)	chr9:117134114-117134386(-)$1	1	126	160	13.5512
(((.((((((((((((....)))))..)))))))	chr2:170684725-170685006(+)$1	1	181	215	12.0955
)))((((((...(((((...)))))...))))))	chr16:89555910-89556145(-)$1	1	188	222	11.8725
(((((.((((..((((...))))..)))))))))	chr22:26146669-26147004(+)$1	1	215	249	10.5731
((((((.(..(((((....)))))..).))))))	chr7:100027469-100027794(+)$1	1	254	288	12.6407
(.....(((..((((....))))....)))....	chr19:34874574-34874845(+)$1	1	109	143	10.9813
(((((((.((.((((.....))))..))..))))	chr9:117134458-117134715(-)$1	1	35	69	11.8484
(((((((.((((.(.....).)))).).)).)))	chr8:11665544-11665812(+)$1	1	175	209	8.8619
(((((((..(((((......)))))....)))))	chr15:88228888-88229204(-)$1	1	192	226	14.3958
(((....((((((((((...))))).)))))...	chr7:30612667-30612957(-)$1	1	193	227	10.2661
(((..((((..(((((...)))))..)))).)))	chr3:9438739-9439025(-)$1	1	245	279	11.8150
((...((((((.(((.....)))...))))))..	chr11:2714340-2714595(-)$1	1	154	188	10.4911
(((.(((..(((((((....))))).))..))).	chr8:1733821-1734098(+)$1	1	37	71	10.9561
.((((....((.(((((...)))))..))...))	chr19:34877711-34877979(+)$1	1	83	117	11.4576
((...((((.(((((.....)))))...))))..	chr3:47010484-47010756(-)$1	1	108	142	13.8430
(((.((((....(((((...))))).)))).)))	chrX:41194443-41194687(+)$1	1	189	223	11.8823
))((((.(.(((((......))))).).))))))	chr3:100428749-100429007(+)$1	1	93	127	11.3708
...(((((...((((.....))))...))))).)	chr8:41526179-41526500(-)$1	1	21	55	11.1756
...(((....(((((.....)))))....)))((	chr1:36849029-36849319(-)$1	1	172	206	10.8862
(.(...((..(((((......)))))..))...)	chr1:43427177-43427477(+)$1	1	153	187	13.8415
(((((.((((...(((....)))...))))...)	chr1:43398775-43399051(-)$1	1	204	238	10.9061
(((.(((((..((((......))))..)).))).	chrX:73068201-73068438(-)$1	1	82	116	11.9068
(((((..(((.(......)...)))..)....))	chr15:64753587-64753871(+)$1	1	12	46	10.1638
(((..((((...(((.....))))))).))))))	chr10:126790280-126790562(-)$1	1	187	221	11.9144
(((..((...(((((.....)))))..))....)	chr15:66970969-66971269(+)$1	1	153	187	13.4753
((.((.((((((((......))))..)))).)).	chr11:126140156-126140473(+)$1	1	228	262	12.1249
((...(((.(((.((......))))).))).)))	chr19:34881112-34881363(+)$1	1	205	239	11.2184
(((((((..(((((......))))).))))))).	chr7:120836198-120836486(+)$1	1	17	51	12.9462
))(((((((.((((......))))...)))))))	chr11:2687827-2688113(-)$1	1	61	95	13.1363
(((...((((((((......))).)))))..)))	chr15:89448568-89448816(-)$1	1	196	230	12.2578
....(.(((...(((.....)))...))).)..)	chr9:125877289-125877571(-)$1	1	173	207	13.4581
((..(((((..((((......))))...))))))	chr12:109124206-109124496(-)$1	1	101	135	12.5993
((..((((....((((....))))...))))..)	chr15:69098502-69098825(-)$1	1	88	122	11.8351
..((((...(((((......))))).))))((((	chr15:27368449-27368704(+)$1	1	104	138	11.3026
((((.((((.((((......))).).))))))))	chrX:154012586-154012858(-)$1	1	54	88	11.4365
(.((.((((.(((((.....))))).))))))))	chr4:99849526-99849815(-)$1	1	153	187	12.4585
(((.(.(((((((((.....))))).)))).).)	chr11:2719720-2719949(-)$1	1	184	218	14.1657
..(((((((.(.(.(.....).).).)))).)))	chr8:41610025-41610330(-)$1	1	94	128	10.1390
...((((((((.(((((...)))))....)))))	chr11:118308410-118308684(+)$1	1	227	261	11.6973

#PSSM
c : 0.31	g : 0.12	f : 0.11	d : 0.11	# : 0.05	= : 0.05	: : 0.05	e : 0.03	[ : 0.03	4 : 0.01	h : 0.01	b : 0.01	) : 0.01	a : 0.01	
c : 0.25	g : 0.12	d : 0.12	f : 0.09	[ : 0.07	# : 0.05	= : 0.05	: : 0.05	e : 0.03	b : 0.03	4 : 0.01	$ : 0.01	h : 0.01	) : 0.01	
c : 0.18	g : 0.14	d : 0.14	# : 0.07	f : 0.07	" : 0.07	= : 0.05	a : 0.03	[ : 0.03	b : 0.03	! : 0.03	e : 0.01	$ : 0.01	h : 0.01	) : 0.01	: : 0.01	
[ : 0.14	g : 0.12	d : 0.11	" : 0.11	c : 0.09	# : 0.09	! : 0.09	= : 0.05	f : 0.05	e : 0.03	b : 0.03	a : 0.01	$ : 0.01	
g : 0.16	c : 0.12	" : 0.12	d : 0.11	a : 0.09	= : 0.05	# : 0.05	e : 0.05	[ : 0.05	! : 0.05	f : 0.03	b : 0.03	$ : 0.01	
d : 0.20	g : 0.12	[ : 0.11	c : 0.11	! : 0.07	f : 0.07	= : 0.07	# : 0.07	" : 0.05	b : 0.03	e : 0.03	$ : 0.01	
d : 0.24	g : 0.11	c : 0.11	e : 0.09	! : 0.07	f : 0.07	# : 0.07	= : 0.05	[ : 0.05	b : 0.05	" : 0.03	a : 0.01	
d : 0.27	e : 0.11	c : 0.11	b : 0.07	f : 0.07	[ : 0.07	a : 0.07	g : 0.05	! : 0.05	# : 0.03	" : 0.03	= : 0.01	
d : 0.25	! : 0.12	[ : 0.09	e : 0.09	b : 0.07	f : 0.07	c : 0.07	# : 0.07	g : 0.05	" : 0.05	= : 0.01	
e : 0.18	! : 0.16	d : 0.14	" : 0.09	[ : 0.09	f : 0.07	b : 0.07	c : 0.05	# : 0.05	g : 0.03	= : 0.01	
e : 0.33	! : 0.14	d : 0.11	" : 0.09	f : 0.07	a : 0.05	g : 0.03	[ : 0.03	b : 0.03	# : 0.03	= : 0.01	c : 0.01	
e : 0.35	[ : 0.16	d : 0.16	c : 0.07	! : 0.07	" : 0.07	# : 0.03	f : 0.01	= : 0.01	a : 0.01	
e : 0.44	c : 0.18	d : 0.18	a : 0.03	[ : 0.03	b : 0.01	f : 0.01	! : 0.01	= : 0.01	" : 0.01	o : 0.01	
e : 0.44	c : 0.22	d : 0.18	b : 0.05	f : 0.01	= : 0.01	a : 0.01	o : 0.01	[ : 0.01	
e : 0.33	o : 0.24	c : 0.16	d : 0.14	b : 0.03	f : 0.01	= : 0.01	n : 0.01	a : 0.01	
o : 0.38	n : 0.29	e : 0.18	d : 0.05	c : 0.03	m : 0.03	
o : 0.38	n : 0.29	m : 0.14	e : 0.11	l : 0.05	
o : 0.38	n : 0.29	l : 0.16	m : 0.14	
o : 0.37	n : 0.29	l : 0.16	m : 0.14	a : 0.01	
o : 0.37	n : 0.27	m : 0.11	l : 0.11	d : 0.03	e : 0.03	c : 0.01	a : 0.01	3 : 0.01	
e : 0.40	c : 0.20	d : 0.14	o : 0.14	b : 0.01	f : 0.01	] : 0.01	3 : 0.01	a : 0.01	
e : 0.44	c : 0.22	d : 0.20	b : 0.05	f : 0.01	= : 0.01	3 : 0.01	] : 0.01	
e : 0.44	c : 0.22	d : 0.20	] : 0.03	b : 0.03	f : 0.01	= : 0.01	a : 0.01	
e : 0.44	d : 0.20	3 : 0.09	c : 0.05	] : 0.05	a : 0.03	4 : 0.03	2 : 0.03	f : 0.01	= : 0.01	
e : 0.42	2 : 0.14	3 : 0.14	d : 0.09	4 : 0.03	c : 0.03	a : 0.03	] : 0.01	f : 0.01	= : 0.01	b : 0.01	
] : 0.25	3 : 0.22	2 : 0.20	4 : 0.09	d : 0.07	e : 0.05	f : 0.01	g : 0.01	= : 0.01	b : 0.01	c : 0.01	
d : 0.27	3 : 0.12	2 : 0.12	4 : 0.09	a : 0.07	b : 0.05	] : 0.05	e : 0.05	c : 0.05	g : 0.03	= : 0.01	f : 0.01	
d : 0.25	b : 0.11	3 : 0.09	g : 0.09	c : 0.09	4 : 0.07	e : 0.07	] : 0.07	a : 0.03	f : 0.03	2 : 0.03	= : 0.01	
d : 0.29	4 : 0.11	c : 0.11	b : 0.11	e : 0.09	g : 0.09	f : 0.07	2 : 0.05	= : 0.03	3 : 0.01	
d : 0.25	g : 0.12	2 : 0.09	e : 0.09	f : 0.07	4 : 0.07	] : 0.07	c : 0.07	b : 0.05	= : 0.03	3 : 0.03	
g : 0.16	] : 0.14	f : 0.09	3 : 0.09	4 : 0.09	e : 0.09	c : 0.09	d : 0.07	= : 0.05	a : 0.03	2 : 0.03	b : 0.01	
g : 0.16	c : 0.12	f : 0.11	3 : 0.11	d : 0.11	4 : 0.07	2 : 0.05	= : 0.05	e : 0.05	a : 0.03	b : 0.03	] : 0.01	5 : 0.01	h : 0.01	
g : 0.14	f : 0.12	c : 0.12	3 : 0.09	d : 0.09	2 : 0.07	] : 0.07	e : 0.07	= : 0.05	4 : 0.03	5 : 0.03	h : 0.01	B : 0.01	b : 0.01	
f : 0.14	g : 0.14	d : 0.12	c : 0.11	= : 0.07	] : 0.07	a : 0.05	e : 0.05	5 : 0.03	2 : 0.03	b : 0.01	3 : 0.01	4 : 0.01	h : 0.01	B : 0.01	: : 0.01	i : 0.01	

#score	641.3783231967146
#seq	54
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_CDS_m1_run1.txt

#BEAR
##eeeee[a[iiiiiiiiillliiiiiiiii22a]eeeee	chr11:62296868-62297121(-)$1	253	89	129	12.7089
cccdddd[eeeee[cccooooooccc22eeeee]dddd]c	chr1:8923234-8923464(-)$1	230	165	205	12.3286
D:::eeeee"""ccc!!bbmmmmbb22ccc333eeeeecc	chr11:5269494-5269750(-)$1	256	17	57	11.4077
!!ffffff"""bb[eeeeemmmmeeeee]bb333ffffff	chr15:44086058-44086290(+)$1	232	132	172	11.4795
cccdddd"""eeeee[cccmmmmccc4444eeeeedddd]	chr11:5290770-5291006(-)$1	236	164	204	12.9482
e[a[ccc[dddddddd[aooooooa]dddd]dddd]ccc]	chr11:5289611-5289827(-)$1	216	4	44	12.4070
hhhhhhh$$$$$a[cccbbmmmmbb]ccc]a4444hhhhh	chr11:62286000-62286255(-)$1	255	73	113	12.5239
iggggggg[ffffff"""ammmma333ffffff]gggggg	chr19:1599394-1599637(-)$1	243	70	110	12.6067
::eeeee$$$$$ccc[cccmmmmccc]ccc4444eeeee:	chr11:63743619-63743889(+)$1	270	105	145	11.7854
ee[ccc!!dddd[bb!!ccclllccc22bbddddccc]ee	chr1:165624588-165624835(+)$1	247	26	66	12.4140
dd[ccc[ccc[bb!!cccoooooocccbbccc]ccc]ddd	chr15:79165205-79165490(+)$1	285	14	54	12.8597
cc===========[ddddbblllbb]dddd22========	chr19:40330970-40331256(-)$1	286	233	273	13.5502
ff[dddd####ggggggg!!ammmma22ggggggg4444d	chr5:85916384-85916670(+)$1	286	234	274	11.3933
ccc!!dddd!!bb!!bboooooobb]bb]ddddccc]ddd	chr11:5290691-5290970(-)$1	279	229	269	11.1948
[cccdddd[eeeeecccbbnnnnnbb]ccc333eeeee]d	chr11:5290583-5290801(-)$1	218	89	129	12.0055
[dddd"""eeeee"""cccmmmmccc22eeeeedddd]a]	chr11:62341202-62341430(-)$1	228	137	177	13.0270
======$$$$$ccc!!cccmmmmccc22ccc333======	chr16:204215-204475(+)$1	260	194	234	17.1005
:a[ccc"""==========lll==========4444ccc]	chr1:28564377-28564617(+)$1	240	111	151	14.3690
d[a[eeeee[bb[a[ddddmmmmdddd]abb333eeeee]	chr10:71151859-71152122(+)$1	263	11	51	12.2552
:iiiiiiiiiccc"""cccooooooccc333ccc>>>>>>	chr6:170844135-170844411(-)$1	276	147	187	11.5362
gg[a[ccc[dddddddd[aooooooa]dddd]dddd]ccc	chr11:5289627-5289839(-)$1	212	15	55	12.6720
gggggg[dddd[bb!!bboooooobb22bb]ddddggggg	chrX:77160588-77160875(+)$1	287	76	116	12.7694
ee[cccccc!!cccooooooccc4444ccc333ccc]eee	chr1:8922863-8923094(-)$1	231	38	78	11.4348
::::eeeee"""ccc!!bbmmmmbb22ccc333eeeeecc	chr11:5274406-5274688(-)$1	282	37	77	11.5575
gggggg!!dddd[a[cccnnnnnccc22a]dddd333ggg	chr3:53259588-53259952(-)$1	364	70	110	12.8995
iiiiiiiii!!gggggggnnnnnggggggg666666iiii	chr2:85824518-85824775(+)$1	257	105	145	10.5230
##eeeee[dddd####cccoooooocccdddd]eeeee44	chr11:62298795-62299025(-)$1	230	78	118	12.2417
ee[ccc[bbdddd!!bboooooobb]dddd22bb]ccc]e	chr6:31698634-31698853(-)$1	219	117	157	11.5882
!!ffffff"""bb[eeeeemmmmeeeee]bb333ffffff	chr15:44086012-44086258(+)$1	246	178	218	11.4795
cccc[ccceeeee!!ddddmmmmdddd]eeeee333ccc]	chr8:125561925-125562192(+)$1	267	83	123	12.0601
:ggggggg!!dddd[arrrrrrrrra]dddd22ggggggg	chr16:56643140-56643397(+)$1	257	206	246	10.6700
[ccc"""ccc!!ddddcccmmmmccc]dddd22cccccca	chr10:79793533-79793763(+)$1	230	134	174	13.9434
$$$gggggggeeeeecccooooooccc4444eeeee]ggg	chr16:30081228-30081450(+)$1	222	151	191	12.4165
===========[eeeee[ammmma]eeeee]=========	chr3:197677737-197677950(+)$1	213	94	134	13.8251
ggggggga[cccaccccccmmmmccc4444ccc]a]ccc]	chr11:61557156-61557413(-)$1	257	133	173	14.1874
::ddddiiiiiiiii!!bbmmmmbb22iiiiiiiii]ddd	chr6:31694791-31695084(-)$1	293	12	52	11.7446
ggggggg[dddd"""a[bbmmmmbb]a333dddd4444gg	chr12:112846332-112846562(-)$1	230	95	135	14.0177
=========!!bb!!a[bbmmmmbba22bb333=======	chr20:60962839-60963064(+)$1	225	34	74	17.3501
======$$$$$ccc!!cccmmmmccc22ccc333======	chr16:204289-204594(+)$1	305	120	160	17.1005
ee[ccc!!dddd[bb!!ccclllccc22bbddddccc]ee	chr1:165624532-165624788(+)$1	256	82	122	12.4140
d[ccc[bb####ddddoooooodddd22bbcccddddccc	chr15:66795761-66795968(-)$1	207	110	150	11.1350
[cccccc[accc"""ddddmmmmdddd]ccc22a]ccc]c	chr12:57031939-57032210(-)$1	271	55	95	13.4897
=======####cccrrrrrrrrrccc22============	chr2:98264436-98264681(+)$1	245	193	233	13.3520
eeeeea[dddd!!ccc[bbmmmmbbcccdddd]a]eeeee	chr11:8704648-8704876(+)$1	228	126	166	12.3645
iiiiiiiii[affffff[allla]ffffff4444a]iiii	chr14:50052902-50053127(-)$1	225	141	181	12.6180
b!!==========ccc[bbnnnnnbbccc22=========	chr16:56717812-56718084(+)$1	272	126	166	12.9999
eeedddd$$$$$dddd[bbmmmmbb]dddd333dddd]ee	chr11:18428636-18428884(+)$1	248	147	187	12.8835
c[ccc!!bb!!gggggggooooooggggggg4444bb22c	chr1:45976849-45977108(-)$1	259	76	116	12.8742
[ccc[ccc####gggggggmmmmggggggg22cccccc]d	chr8:125559203-125559455(+)$1	252	181	221	13.8587
=========!!bb!!a[bbmmmmbba22bb333=======	chr20:60962864-60963072(+)$1	208	9	49	17.3501
dddd[a!!gggggggccc!!ammmma22ccc]ggggggg3	chr2:47387818-47388044(-)$1	226	127	167	11.8059
####eeeeebb[ccc!!bbmmmmbb22ccc]bb]eeeee2	chr11:5290961-5291214(-)$1	253	90	130	12.1471
ddd!!cccbb!!ccccccmmmmccc333ccc22bb333cc	chr7:22862286-22862557(-)$1	271	134	174	12.9111
gg[a[ccc[dddddddd[aooooooa]dddd]dddd]ccc	chr11:5289642-5289871(-)$1	229	47	87	12.6720

#otherMatches

#Seq PSSM
GAUGGAUGUGAAUGUUGGUGAUAUUGAUAUUGAAGGUCCA	chr11:62296868-62297121(-)$1	253	89	129	12.7089
GGGCAGGUAAGAAUGAGCGUCUCCUCCUUUCUUCUCUGAC	chr1:8923234-8923464(-)$1	230	165	205	12.3286
CCUUUCAUCUCAACAGCUCCUGGGAAAUGUGCUGGUGACC	chr11:5269494-5269750(-)$1	256	17	57	11.4077
GUUUUUUAUUCCUGUGGGGCUCACCCCAAAGUAUUAAAAG	chr15:44086058-44086290(+)$1	232	132	172	11.4795
UCUGCCAUCCUGGGCAACCCCAAGGUCAAGGCCCAUGGCA	chr11:5290770-5291006(-)$1	236	164	204	12.9482
UGGGUAACGUGAUGGUGAUUAUUCUGGCUACUCACUUUGG	chr11:5289611-5289827(-)$1	216	4	44	12.4070
UUUCCAUGCCCAAGAUCGGCAUCCCAGGUGUGAAAAUGGA	chr11:62286000-62286255(-)$1	255	73	113	12.5239
UCUCGCAGGGUCCCGACGGCCUACACAUGGGGCGCUGUGG	chr19:1599394-1599637(-)$1	243	70	110	12.6067
UCGUGACCUUCCUCCUGCCAGCGGGCUGGAUCCUGUCACA	chr11:63743619-63743889(+)$1	270	105	145	11.7854
GCGUAGUCGAGGAGCCCUGGGGUCCAUCGCCCUCCUGGGC	chr1:165624588-165624835(+)$1	247	26	66	12.4140
GCGGGCGCUGGCAAAUCCGGCCCAGGAUGUAGAGCUGGCA	chr15:79165205-79165490(+)$1	285	14	54	12.8597
CUUCGGGGCAGGGAGAGGCUGGGGGUCCUCACCCCUGCUC	chr19:40330970-40331256(-)$1	286	233	273	13.5502
UAAUUGGCCAUUUGCCUACUUUAUUAUUUGGGUAACAUUC	chr5:85916384-85916670(+)$1	286	234	274	11.3933
UGCUAAGCUGAGUGAGCUGCACUGUGACAAGCUGCAUGUG	chr11:5290691-5290970(-)$1	279	229	269	11.1948
AGCUGCAUGUGGAUCCUGAGAACUUCAAGGUGAGUUCAGG	chr11:5290583-5290801(-)$1	218	89	129	12.0055
CUGGCUCUGGUGGUUCGGGUCAUCCUAUCCACCGCCAUCC	chr11:62341202-62341430(-)$1	228	137	177	13.0270
CGGGACCCCCAGGACAGGCUGCGGCCCCUCCCCCGUCCUG	chr16:204215-204475(+)$1	260	194	234	17.1005
AGUGCACACCGUGUGCCAUAGAAUGGCACAUGUCAUUGCC	chr1:28564377-28564617(+)$1	240	111	151	14.3690
UGUGUUCCAGGGACCGGCAGCAAUGCCUGCUACAUGGAGG	chr10:71151859-71152122(+)$1	263	11	51	12.2552
UGUACUUUGGAACUGUACCUUGGAUGGUUUUGUUUAUUAA	chr6:170844135-170844411(-)$1	276	147	187	11.5362
CUGGGUAACGUGAUGGUGAUUAUUCUGGCUACUCACUUUG	chr11:5289627-5289839(-)$1	212	15	55	12.6720
AUUUUAAUUCUUACAGGUAGCAACACAAGUCGGAAUAGAA	chrX:77160588-77160875(+)$1	287	76	116	12.7694
AAUGCCUGCAAAGCUUGUCCGCUGUAAGCAAAUGGCCUUU	chr1:8922863-8923094(-)$1	231	38	78	11.4348
CCUUUCAUCUCAACAGCUCCUGGGAAAUGUGCUGGUGACC	chr11:5274406-5274688(-)$1	282	37	77	11.5575
GCAGUUAACCGGGUACCAAGAAGUGGGAAGCCGGCUGAGC	chr3:53259588-53259952(-)$1	364	70	110	12.8995
GUGAGGAGGUUGGGGCUGAGUGCUGGCCCUCUGCGUCUUC	chr2:85824518-85824775(+)$1	257	105	145	10.5230
AUGUCAGUGCCCCAGAUGUUGAAAUGCAGGGUCCUGACUG	chr11:62298795-62299025(-)$1	230	78	118	12.2417
CCGGGGAGUGCAUCGGUACUUGAGCAAUGCCUACGCCCGG	chr6:31698634-31698853(-)$1	219	117	157	11.5882
GUUUUUUAUUCCUGUGGGGCUCACCCCAAAGUAUUAAAAG	chr15:44086012-44086258(+)$1	246	178	218	11.4795
AGCUGCAGGAGGAAACGCCACCUGGUGGUCCUUUAACUGA	chr8:125561925-125562192(+)$1	267	83	123	12.0601
CCGUUUGCUAUAUUCCUUUUUCUAUGAAAUAAUGUGAAUG	chr16:56643140-56643397(+)$1	257	206	246	10.6700
UCUCCCUGGGCCCGUGCAGUCAUCUGCCGCGUAUCCGAGC	chr10:79793533-79793763(+)$1	230	134	174	13.9434
CCUGGGUGGAUGGGACUCGGAGAAGAGCCCUUCUCACUCC	chr16:30081228-30081450(+)$1	222	151	191	12.4165
AGGAACUAUGUCUGGAAGGUACGCGUUUUAAAUAUAGUUC	chr3:197677737-197677950(+)$1	213	94	134	13.8251
GCAUCUACGUGUGAGCACCCAAGGGUAAGAGCUGCAAUGG	chr11:61557156-61557413(-)$1	257	133	173	14.1874
AGGCUGGCGCCGGGCUCAGCUCCCUCUGCUUGGUGCUCAG	chr6:31694791-31695084(-)$1	293	12	52	11.7446
UUUUUAGAUGGCGGGUGAAAAAGUUGAGAAGCCAGAUACU	chr12:112846332-112846562(-)$1	230	95	135	14.0177
UUUGUGACCCUUCUUCUCUUUCUAGGUUGACAAGGUCACA	chr20:60962839-60963064(+)$1	225	34	74	17.3501
CGGGACCCCCAGGACAGGCUGCGGCCCCUCCCCCGUCCUG	chr16:204289-204594(+)$1	305	120	160	17.1005
GCGUAGUCGAGGAGCCCUGGGGUCCAUCGCCCUCCUGGGC	chr1:165624532-165624788(+)$1	256	82	122	12.4140
CGCCCACUGAUAUCGGUGUACUCCGAAAAGGGGGAGUCAU	chr15:66795761-66795968(-)$1	207	110	150	11.1350
AGAAGCUGUGGCAAAAGCUGAUAAGCUGGCUGAAGAGCAU	chr12:57031939-57032210(-)$1	271	55	95	13.4897
AGCCAUUGCAUUGGCUCCUUCUCCCAUAGAUGGCUGGUCU	chr2:98264436-98264681(+)$1	245	193	233	13.3520
ACUUAGGGGCCACGUGAGCCACGGCCACGGCCGCAUAGGU	chr11:8704648-8704876(+)$1	228	126	166	12.3645
GAUUUUGGGGAAGCGUUGCCGUGGAGCGCUAGGCUGCUUA	chr14:50052902-50053127(-)$1	225	141	181	12.6180
ACAAGUGCAGCUGCUGUGCCUGAUGCCAGGACAGCUGUGC	chr16:56717812-56718084(+)$1	272	126	166	12.9999
AGUGCAGAUACACUUUGGGGGAUCCAAAAGGAGCUGCAAU	chr11:18428636-18428884(+)$1	248	147	187	12.8835
AGAGCAAAGAAUAUUUCUCCAAGCAGAAGUGAGCGCUGGG	chr1:45976849-45977108(-)$1	259	76	116	12.8742
AGCUAUGUAGAUGGAGUGAAGUUUUGCUCCCCACAAGCAG	chr8:125559203-125559455(+)$1	252	181	221	13.8587
UUUGUGACCCUUCUUCUCUUUCUAGGUUGACAAGGUCACA	chr20:60962864-60963072(+)$1	208	9	49	17.3501
UGAAGACCUUGUACAGAAUGUGUUAAAUUUCUUGUACAAA	chr2:47387818-47388044(-)$1	226	127	167	11.8059
CAUCAUGGUGCAUUUUACUGCUGAGGAGAAGGCUGCCGUC	chr11:5290961-5291214(-)$1	253	90	130	12.1471
CUCCCUGCGCCACACGGCCGUCGCCAUGGUGAAGCUGAGC	chr7:22862286-22862557(-)$1	271	134	174	12.9111
CUGGGUAACGUGAUGGUGAUUAUUCUGGCUACUCACUUUG	chr11:5289642-5289871(-)$1	229	47	87	12.6720

#DB
..(((((.(.(((((((((...)))))))))..).)))))	chr11:62296868-62297121(-)$1	1	89	129	12.7089
(((((((.(((((.(((......)))..))))).)))).)	chr1:8923234-8923464(-)$1	1	165	205	12.3286
(...(((((...(((..((....))..)))...)))))((	chr11:5269494-5269750(-)$1	1	17	57	11.4077
..((((((...((.(((((....))))).))...))))))	chr15:44086058-44086290(+)$1	1	132	172	11.4795
(((((((...(((((.(((....)))....))))))))).	chr11:5290770-5291006(-)$1	1	164	204	12.9482
(.(.(((.((((((((.(......).)))).)))).))).	chr11:5289611-5289827(-)$1	1	4	44	12.4070
(((((((.....(.(((((....)).))).)....)))))	chr11:62286000-62286255(-)$1	1	73	113	12.5239
)(((((((.((((((...(....)...)))))).))))))	chr19:1599394-1599637(-)$1	1	70	110	12.6067
..(((((.....(((.(((....))).)))....))))).	chr11:63743619-63743889(+)$1	1	105	145	11.7854
((.(((..((((.((..(((...)))..))))))))).))	chr1:165624588-165624835(+)$1	1	26	66	12.4140
((.(((.(((.((..(((......)))))))).))).)))	chr15:79165205-79165490(+)$1	1	14	54	12.8597
))(((((((((((.((((((...)).))))..))))))))	chr19:40330970-40331256(-)$1	1	233	273	13.5502
((.((((....(((((((..(....)..)))))))....)	chr5:85916384-85916670(+)$1	1	234	274	11.3933
(((..((((..((..((......)).)).))))))).)))	chr11:5290691-5290970(-)$1	1	229	269	11.1948
.(((((((.((((((((((.....)).)))...))))).)	chr11:5290583-5290801(-)$1	1	89	129	12.0055
.((((...(((((...(((....)))..))))))))).).	chr11:62341202-62341430(-)$1	1	137	177	13.0270
((((((.....(((..(((....)))..)))...))))))	chr16:204215-204475(+)$1	1	194	234	17.1005
.(.(((...((((((((((...))))))))))....))).	chr1:28564377-28564617(+)$1	1	111	151	14.3690
(.(.(((((.((.(.((((....)))).)))...))))).	chr10:71151859-71152122(+)$1	1	11	51	12.2552
.((((((((((((...(((......)))...)))......	chr6:170844135-170844411(-)$1	1	147	187	11.5362
((.(.(((.((((((((.(......).)))).)))).)))	chr11:5289627-5289839(-)$1	1	15	55	12.6720
((((((.((((.((..((......))..)).)))))))))	chrX:77160588-77160875(+)$1	1	76	116	12.7694
((.((((((..(((......)))....)))...))).)))	chr1:8922863-8923094(-)$1	1	38	78	11.4348
....(((((...(((..((....))..)))...)))))((	chr11:5274406-5274688(-)$1	1	37	77	11.5575
((((((..((((.(.(((.....)))..).))))...)))	chr3:53259588-53259952(-)$1	1	70	110	12.8995
(((((((((..(((((((.....)))))))......))))	chr2:85824518-85824775(+)$1	1	105	145	10.5230
..(((((.((((....(((......))))))).)))))..	chr11:62298795-62299025(-)$1	1	78	118	12.2417
((.(((.((((((..((......)).))))..)).))).)	chr6:31698634-31698853(-)$1	1	117	157	11.5882
..((((((...((.(((((....))))).))...))))))	chr15:44086012-44086258(+)$1	1	178	218	11.4795
((((.((((((((..((((....)))).)))))...))).	chr8:125561925-125562192(+)$1	1	83	123	12.0601
.(((((((..((((.(.........).))))..)))))))	chr16:56643140-56643397(+)$1	1	206	246	10.6700
.(((...(((..(((((((....))).))))..)))))))	chr10:79793533-79793763(+)$1	1	134	174	13.9434
...(((((((((((((((......)))....))))).)))	chr16:30081228-30081450(+)$1	1	151	191	12.4165
(((((((((((.(((((.(....).))))).)))))))))	chr3:197677737-197677950(+)$1	1	94	134	13.8251
((((((((.((((((((((....)))....))).).))).	chr11:61557156-61557413(-)$1	1	133	173	14.1874
..(((((((((((((..((....))..))))))))).)))	chr6:31694791-31695084(-)$1	1	12	52	11.7446
(((((((.((((...(.((....)).)...))))....))	chr12:112846332-112846562(-)$1	1	95	135	14.0177
(((((((((..((..(.((....)))..))...)))))))	chr20:60962839-60963064(+)$1	1	34	74	17.3501
((((((.....(((..(((....)))..)))...))))))	chr16:204289-204594(+)$1	1	120	160	17.1005
((.(((..((((.((..(((...)))..))))))))).))	chr1:165624532-165624788(+)$1	1	82	122	12.4140
(.(((.((....((((......))))..))))))))))))	chr15:66795761-66795968(-)$1	1	110	150	11.1350
.((((((.((((...((((....)))).)))..).))).)	chr12:57031939-57032210(-)$1	1	55	95	13.4897
(((((((....(((.........)))..))))))))))))	chr2:98264436-98264681(+)$1	1	193	233	13.3520
((((((.((((..(((.((....))))))))).).)))))	chr11:8704648-8704876(+)$1	1	126	166	12.3645
(((((((((.(((((((.(...).))))))....).))))	chr14:50052902-50053127(-)$1	1	141	181	12.6180
(..(((((((((((((.((.....)))))..)))))))))	chr16:56717812-56718084(+)$1	1	126	166	12.9999
(((((((.....((((.((....)).))))...)))).))	chr11:18428636-18428884(+)$1	1	147	187	12.8835
(.(((..((..(((((((......)))))))....))..)	chr1:45976849-45977108(-)$1	1	76	116	12.8742
.(((.(((....(((((((....)))))))..)))))).)	chr8:125559203-125559455(+)$1	1	181	221	13.8587
(((((((((..((..(.((....)))..))...)))))))	chr20:60962864-60963072(+)$1	1	9	49	17.3501
((((.(..((((((((((..(....)..))).))))))).	chr2:47387818-47388044(-)$1	1	127	167	11.8059
....(((((((.(((..((....))..))).)).))))).	chr11:5290961-5291214(-)$1	1	90	130	12.1471
(((..(((((..((((((....)))...)))..))...))	chr7:22862286-22862557(-)$1	1	134	174	12.9111
((.(.(((.((((((((.(......).)))).)))).)))	chr11:5289642-5289871(-)$1	1	47	87	12.6720

#PSSM
e : 0.12	c : 0.11	: : 0.11	= : 0.11	g : 0.11	d : 0.09	[ : 0.09	# : 0.05	i : 0.05	! : 0.03	D : 0.01	h : 0.01	f : 0.01	$ : 0.01	b : 0.01	
c : 0.16	g : 0.14	e : 0.11	= : 0.11	: : 0.07	[ : 0.07	d : 0.07	# : 0.05	! : 0.05	i : 0.05	h : 0.01	f : 0.01	a : 0.01	$ : 0.01	
c : 0.18	[ : 0.16	= : 0.12	g : 0.11	e : 0.09	d : 0.07	i : 0.05	: : 0.03	f : 0.03	a : 0.03	h : 0.01	$ : 0.01	! : 0.01	# : 0.01	
c : 0.24	= : 0.14	d : 0.12	g : 0.12	e : 0.07	i : 0.05	: : 0.03	f : 0.03	[ : 0.03	! : 0.03	a : 0.03	h : 0.01	# : 0.01	
c : 0.18	e : 0.14	= : 0.14	d : 0.12	g : 0.12	[ : 0.09	i : 0.05	f : 0.03	! : 0.03	h : 0.01	" : 0.01	
c : 0.24	= : 0.14	e : 0.12	d : 0.12	g : 0.12	i : 0.05	f : 0.03	" : 0.03	a : 0.03	h : 0.01	[ : 0.01	! : 0.01	
c : 0.14	e : 0.12	d : 0.11	= : 0.11	g : 0.09	! : 0.09	[ : 0.07	i : 0.07	" : 0.05	f : 0.03	$ : 0.03	h : 0.01	b : 0.01	
c : 0.14	[ : 0.11	$ : 0.09	= : 0.09	e : 0.07	! : 0.07	d : 0.07	i : 0.07	" : 0.05	g : 0.05	b : 0.05	f : 0.03	# : 0.03	a : 0.01	
d : 0.16	e : 0.12	$ : 0.09	[ : 0.09	= : 0.09	" : 0.07	# : 0.07	i : 0.07	c : 0.05	b : 0.05	a : 0.03	g : 0.03	! : 0.01	
d : 0.20	! : 0.12	" : 0.09	$ : 0.09	e : 0.07	c : 0.07	= : 0.07	# : 0.07	[ : 0.05	i : 0.03	g : 0.03	b : 0.03	f : 0.01	
d : 0.22	! : 0.14	e : 0.11	$ : 0.09	" : 0.07	= : 0.07	# : 0.07	c : 0.05	i : 0.03	b : 0.03	f : 0.01	[ : 0.01	a : 0.01	g : 0.01	
d : 0.18	b : 0.12	c : 0.12	e : 0.11	g : 0.07	$ : 0.05	= : 0.05	[ : 0.05	! : 0.05	i : 0.03	" : 0.03	f : 0.03	# : 0.03	
c : 0.18	d : 0.14	e : 0.12	b : 0.12	g : 0.09	[ : 0.07	= : 0.05	i : 0.03	a : 0.03	f : 0.03	" : 0.03	# : 0.01	! : 0.01	
c : 0.22	d : 0.12	! : 0.11	[ : 0.09	g : 0.09	e : 0.07	" : 0.07	b : 0.05	i : 0.03	f : 0.03	a : 0.03	= : 0.01	# : 0.01	
c : 0.20	! : 0.16	d : 0.12	e : 0.09	g : 0.09	" : 0.07	[ : 0.05	i : 0.03	f : 0.03	b : 0.03	= : 0.01	o : 0.01	# : 0.01	r : 0.01	
c : 0.20	d : 0.18	! : 0.16	g : 0.07	a : 0.07	e : 0.05	" : 0.05	[ : 0.03	b : 0.03	i : 0.01	= : 0.01	o : 0.01	# : 0.01	r : 0.01	f : 0.01	
c : 0.31	[ : 0.12	! : 0.11	d : 0.11	g : 0.07	e : 0.05	b : 0.05	o : 0.03	r : 0.03	i : 0.01	" : 0.01	= : 0.01	f : 0.01	
c : 0.29	b : 0.24	o : 0.09	d : 0.07	g : 0.07	[ : 0.07	e : 0.03	r : 0.03	i : 0.01	a : 0.01	" : 0.01	= : 0.01	
b : 0.24	c : 0.20	o : 0.18	a : 0.09	d : 0.05	e : 0.03	! : 0.03	n : 0.03	r : 0.03	i : 0.01	= : 0.01	g : 0.01	m : 0.01	
m : 0.48	o : 0.25	n : 0.07	l : 0.05	c : 0.03	! : 0.03	r : 0.03	b : 0.01	
m : 0.48	o : 0.24	l : 0.11	n : 0.07	a : 0.03	r : 0.03	c : 0.01	
m : 0.51	o : 0.24	l : 0.11	n : 0.07	r : 0.03	c : 0.01	
m : 0.49	o : 0.22	n : 0.07	l : 0.05	c : 0.03	r : 0.03	i : 0.01	= : 0.01	d : 0.01	a : 0.01	
c : 0.24	b : 0.24	o : 0.16	d : 0.07	e : 0.03	a : 0.03	m : 0.03	n : 0.03	g : 0.03	i : 0.01	= : 0.01	4 : 0.01	r : 0.01	] : 0.01	
b : 0.29	c : 0.27	d : 0.07	o : 0.07	g : 0.05	e : 0.03	m : 0.03	i : 0.01	a : 0.01	3 : 0.01	= : 0.01	4 : 0.01	r : 0.01	] : 0.01	f : 0.01	
c : 0.31	] : 0.12	a : 0.12	2 : 0.07	d : 0.07	e : 0.05	b : 0.05	g : 0.05	3 : 0.03	i : 0.01	= : 0.01	4 : 0.01	f : 0.01	
2 : 0.33	d : 0.12	c : 0.12	] : 0.11	e : 0.05	4 : 0.05	g : 0.05	3 : 0.03	i : 0.01	b : 0.01	= : 0.01	a : 0.01	f : 0.01	
2 : 0.25	c : 0.20	d : 0.14	e : 0.05	4 : 0.05	] : 0.05	g : 0.05	i : 0.03	f : 0.03	b : 0.03	3 : 0.03	= : 0.01	
c : 0.24	d : 0.18	b : 0.12	e : 0.07	g : 0.07	] : 0.05	4 : 0.05	i : 0.03	f : 0.03	= : 0.03	a : 0.03	3 : 0.03	
c : 0.22	d : 0.20	b : 0.16	e : 0.07	g : 0.07	4 : 0.05	i : 0.03	] : 0.03	f : 0.03	= : 0.03	3 : 0.03	2 : 0.01	
d : 0.20	3 : 0.14	c : 0.14	e : 0.07	] : 0.07	2 : 0.07	b : 0.05	4 : 0.05	i : 0.03	g : 0.03	= : 0.03	a : 0.01	f : 0.01	6 : 0.01	
3 : 0.22	d : 0.16	2 : 0.14	e : 0.09	4 : 0.07	c : 0.07	= : 0.07	] : 0.05	f : 0.01	g : 0.01	6 : 0.01	i : 0.01	b : 0.01	
3 : 0.22	d : 0.16	2 : 0.09	e : 0.09	4 : 0.09	= : 0.07	c : 0.07	] : 0.05	g : 0.03	b : 0.03	f : 0.01	6 : 0.01	i : 0.01	
d : 0.20	e : 0.11	3 : 0.11	c : 0.11	= : 0.11	4 : 0.09	] : 0.07	a : 0.05	g : 0.05	b : 0.03	6 : 0.01	i : 0.01	
e : 0.16	d : 0.14	= : 0.14	c : 0.12	] : 0.07	4 : 0.07	g : 0.07	f : 0.03	3 : 0.03	a : 0.03	> : 0.01	6 : 0.01	i : 0.01	b : 0.01	
e : 0.18	c : 0.16	= : 0.14	d : 0.12	g : 0.07	] : 0.05	4 : 0.05	3 : 0.05	f : 0.03	h : 0.01	> : 0.01	6 : 0.01	i : 0.01	b : 0.01	
c : 0.18	e : 0.16	= : 0.14	] : 0.12	d : 0.09	g : 0.07	f : 0.03	4 : 0.03	3 : 0.03	i : 0.03	h : 0.01	> : 0.01	b : 0.01	
c : 0.20	e : 0.18	= : 0.14	g : 0.11	d : 0.09	] : 0.07	f : 0.03	4 : 0.03	i : 0.03	h : 0.01	> : 0.01	2 : 0.01	3 : 0.01	
c : 0.20	e : 0.16	= : 0.14	g : 0.12	] : 0.09	d : 0.07	f : 0.03	4 : 0.03	i : 0.03	h : 0.01	a : 0.01	> : 0.01	2 : 0.01	
c : 0.16	= : 0.14	e : 0.12	] : 0.12	g : 0.11	d : 0.11	f : 0.03	i : 0.03	h : 0.01	: : 0.01	> : 0.01	4 : 0.01	a : 0.01	3 : 0.01	2 : 0.01	

#score	691.2609532723145
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_transcript_m2_run1.txt

#BEAR
e"""eeeeevvvvvvvvvvvvveeeeeeeee	chr11:8704257-8704463(+)$1	206	70	101	23.7451
gggggbbdddduuuuuuuuuuuudddd]bb]	chr2:85133460-85133701(+)$1	241	34	65	23.5525
iii"""ddddattttttttttta]dddd]ii	chr1:205683199-205683443(-)$1	244	107	138	25.0974
"dddd!!ddddtttttttttttdddd]dddd	chr3:183901632-183901868(+)$1	236	135	166	23.3068
:==========ttttttttttt=========	chr12:56119262-56119511(-)$1	249	190	221	25.0524
dd!!ddddyyyyyyyyyyyyyyyydddd333	chr11:65622261-65622505(-)$1	244	191	222	22.9366
[iiiiiiiiivvvvvvvvvvvvviiiiiiii	chr17:61666471-61666738(+)$1	267	85	116	26.2606
[ggggggg[bbtttttttttttbb]gggggg	chr16:31202278-31202509(+)$1	231	190	221	24.4460
dddd[bb[cccwwwwwwwwwwwwwwccc22b	chr6:31637594-31637842(+)$1	248	99	130	21.6816
eeeee[eeeeettttttttttteeeee]eee	chr19:49990764-49990970(+)$1	206	173	204	23.7513
[hhhhhhhhwwwwwwwwwwwwwwhhhhhhhh	chr15:49170865-49171140(+)$1	275	109	140	21.9161
iiiiiiiiivvvvvvvvvvvvviiiiiiiii	chr7:141450019-141450241(+)$1	222	122	153	25.5829
iiiiiiiiiwwwwwwwwwwwwwwiiiiiiii	chr15:91426452-91426683(+)$1	231	84	115	25.3868
[hhhhhhhhvvvvvvvvvvvvvhhhhhhhh]	chr4:39456052-39456287(-)$1	235	54	85	22.1184
"""eeeeewwwwwwwwwwwwwweeeee333e	chr7:96318069-96318310(-)$1	241	8	39	23.4658
ccc"""eeeeettttttttttteeeee]ccc	chr1:201975079-201975320(+)$1	241	125	156	24.4168
ffffacccyyyyyyyyyyyyyyyyccc]a]f	chr9:86583887-86584147(-)$1	260	202	233	23.2252
fff####ddddwwwwwwwwwwwwwwdddd55	chr16:23592253-23592543(-)$1	290	212	243	20.7857
[iiiiiiiiixxxxxxxxxxxxxxxiiiiii	chr22:41166243-41166485(-)$1	242	80	111	20.8821
[gggggggyyyyyyyyyyyyyyyyggggggg	chr1:226107915-226108192(-)$1	277	218	249	24.3151
ffff"""ddddyyyyyyyyyyyyyyyydddd	chr7:72983975-72984224(-)$1	249	32	63	20.9376
eeeee!!ddddtttttttttttddddeeeee	chr11:6634121-6634359(-)$1	238	130	161	23.6515
ddd"""ddddwwwwwwwwwwwwwwddddddd	chr6:33243473-33243675(+)$1	202	126	157	22.9005
ffffff!!bbuuuuuuuuuuuubb22fffff	chr11:64012581-64012827(-)$1	246	45	76	22.9448
===========ttttttttttt=========	chr1:11979762-11980071(-)$1	309	73	104	26.0046
ff$$$$$dddduuuuuuuuuuuudddd333f	chr11:61569194-61569414(-)$1	220	170	201	23.8770
""gggggggwwwwwwwwwwwwwwggggggg3	chr4:109543014-109543227(+)$1	213	75	106	24.8351
"iiiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr12:56556532-56556796(-)$1	264	196	227	26.3589
fffccc!!ccctttttttttttccc22ccc:	chr12:121014555-121014772(+)$1	217	98	129	23.3178
:iiiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr6:150132344-150132630(+)$1	286	215	246	25.3197
ffff[cccyyyyyyyyyyyyyyyyccc]fff	chr12:6640965-6641203(+)$1	238	96	127	23.1941
=ccc[fffffftttttttttttffffffccc	chrX:77381599-77381830(+)$1	231	76	107	22.8066
fff!!ddddwwwwwwwwwwwwwwdddd22ff	chr6:141167031-141167268(-)$1	237	188	219	23.2392
=========wwwwwwwwwwwwww========	chr1:32799019-32799262(+)$1	243	96	127	25.8185
ccc[ccc[ccctttttttttttccc]ccc22	chrX:47516519-47516751(-)$1	232	59	90	24.4207
[bb[bb[ddddtttttttttttdddd]bb]b	chr2:55200074-55200300(-)$1	226	152	183	22.6882
$iiiiiiiiivvvvvvvvvvvvviiiiiiii	chr2:89050241-89050505(+)$1	264	166	197	25.9768
%%%ccceeeeettttttttttteeeee333c	chr19:54705364-54705577(+)$1	213	35	66	22.4899
a[eeeee[awwwwwwwwwwwwwwa]eeeee]	chr11:57509616-57509820(+)$1	204	36	67	23.6965
======!!ccctttttttttttccc22====	chr2:62095682-62095931(-)$1	249	188	219	25.9018
[dddd!!cccuuuuuuuuuuuuccc4444dd	chr11:57507701-57507952(+)$1	251	79	110	25.0976
eeeeeffffffuuuuuuuuuuuuffffff00	chr6:17615255-17615492(-)$1	237	114	145	21.8700
eee####cccuuuuuuuuuuuuccc22eeee	chr11:2949617-2949841(-)$1	224	176	207	25.0002
oeeeeeeeeeettttttttttteeeee:FFF	chr2:135241223-135241432(-)$1	209	167	198	20.9384
c333ccccccuuuuuuuuuuuuccca[ffff	chr7:75695787-75696007(+)$1	220	83	114	23.9730
dd[a[a[cccvvvvvvvvvvvvvccc22a]a	chr19:56185590-56185799(+)$1	209	72	103	24.9628
:ccc!!dddduuuuuuuuuuuudddd22ccc	chr6:75947447-75947683(-)$1	236	187	218	23.7464
=========xxxxxxxxxxxxxxx=======	chr18:673213-673446(+)$1	233	42	73	21.5105
####gggggggtttttttttttggggggg33	chr20:56073165-56073421(-)$1	256	188	219	24.7878
eeee####cccuuuuuuuuuuuuccceeeee	chr11:62392540-62392763(-)$1	223	163	194	24.6850
:eeeeeeeeeettttttttttteeeee]eee	chr9:140137951-140138196(+)$1	245	181	212	22.7427
:::gggggggwwwwwwwwwwwwwwggggggg	chr2:47710037-47710331(+)$1	294	22	53	21.4653
==========uuuuuuuuuuuu=========	chr18:47016784-47017023(-)$1	239	66	97	26.8024
bb!!eeeeevvvvvvvvvvvvveeeee22bb	chr16:56395752-56395991(-)$1	239	6	37	23.1630
gggggggccctttttttttttccc]gggggg	chr17:76220234-76220485(+)$1	251	206	237	24.0403
bb"""eeeeevvvvvvvvvvvvveeeee333	chr11:17402591-17402893(+)$1	302	66	97	24.5899
h$$$$$cccvvvvvvvvvvvvvccc4444hh	chr1:151374199-151374412(+)$1	213	72	103	23.2648
"eeeee[cccxxxxxxxxxxxxxxxccceee	chr20:33128504-33128791(+)$1	287	13	44	19.3713
[dddd[ccc[attttttttttta]ccc]ddd	chr19:896453-896686(-)$1	233	187	218	24.4217
bb[ggggggguuuuuuuuuuuuggggggg]b	chr19:5690418-5690625(+)$1	207	94	125	24.8827
[ffffff!!bbuuuuuuuuuuuubb22ffff	chr19:42751753-42751996(-)$1	243	105	136	22.8840
[dddd"""cccvvvvvvvvvvvvvccc333d	chr4:89442881-89443104(-)$1	223	113	144	24.4367

#otherMatches

#Seq PSSM
CGAAGGCCUUCCUUUUUCGUCUGGGCUGCCA	chr11:8704257-8704463(+)$1	206	70	101	23.7451
GCUUCCCGCUCUCCACAGCCAUUGAGCAGGA	chr2:85133460-85133701(+)$1	241	34	65	23.5525
AUAAAAACCCCUGAAGUAUUGUGUGGGUGUG	chr1:205683199-205683443(-)$1	244	107	138	25.0974
CAGUAAUGGAUCCCCGGCCUCAGUCCCUACU	chr3:183901632-183901868(+)$1	236	135	166	23.3068
CAUCUGGGGGAGUGGAAUAGUAUCCUCCAGG	chr12:56119262-56119511(-)$1	249	190	221	25.0524
UUCGAUUAAAAAAAAAAAAGACAAUAAUAAA	chr11:65622261-65622505(-)$1	244	191	222	22.9366
AGGCAGGGGCUUUUGUAUUUCCUGCCUCUGC	chr17:61666471-61666738(+)$1	267	85	116	26.2606
GAACAGAGGCCAUAGGAUAACAGGGUUUUGU	chr16:31202278-31202509(+)$1	231	190	221	24.4460
GAUUCGCUGAUUCCCUCCCCCACCUGUCCUG	chr6:31637594-31637842(+)$1	248	99	130	21.6816
GGGUGGGAUCCAGGCCGGAAUGGGGUCGCAC	chr19:49990764-49990970(+)$1	206	173	204	23.7513
GGGACCCAACUUUCCGCUAUCUUUUGGGUUC	chr15:49170865-49171140(+)$1	275	109	140	21.9161
AGAGAAGGAGUAGAAAGGAUGAUUCUUCUUU	chr7:141450019-141450241(+)$1	222	122	153	25.5829
CAGCCCGGCUGGUUUUGUAAGAUGCUGGGUU	chr15:91426452-91426683(+)$1	231	84	115	25.3868
AGGAUAUCAGGAAAUUUUUGGAUGGUAUCUA	chr4:39456052-39456287(-)$1	235	54	85	22.1184
GAUGUUCUUUCUGUUUUAUCUUAGAGCUGAA	chr7:96318069-96318310(-)$1	241	8	39	23.4658
UGGCAUUCUGAUUGUUCUUUUUUCAGGUUUA	chr1:201975079-201975320(+)$1	241	125	156	24.4168
GACAGGGAGGAAAAGUAACAAUAGUCCACAU	chr9:86583887-86584147(-)$1	260	202	233	23.2252
UUUCCCCCAUCUUCAGUUUUUCAAUGAUGUC	chr16:23592253-23592543(-)$1	290	212	243	20.7857
CAGUGUUGGUGUUUUCCUCCCUAAAACUAAC	chr22:41166243-41166485(-)$1	242	80	111	20.8821
GAGCUUCCUCUCCUGUCCCAUGUUGGAAGUU	chr1:226107915-226108192(-)$1	277	218	249	24.3151
UUUGAAACCAAAUUAGAAACACAUUCCUUGG	chr7:72983975-72984224(-)$1	249	32	63	20.9376
ggaaguagguggcagauguuAACGCCCUUcc	chr11:6634121-6634359(-)$1	238	130	161	23.6515
GGUGUUGAGGAAAGCAGACAUUGACCUCACC	chr6:33243473-33243675(+)$1	202	126	157	22.9005
CUCCUCCCCCACCCCCACCCCAGGAAGAGGA	chr11:64012581-64012827(-)$1	246	45	76	22.9448
UCUUAAUGAAGUUUUAAUUUAUUUUUGUUGA	chr1:11979762-11980071(-)$1	309	73	104	26.0046
UUAUAACAGCAAGGAAACAUUAAUGCUUAGA	chr11:61569194-61569414(-)$1	220	170	201	23.8770
CUCUAUUCUUAAUUUAGGCACUCAGAAUGGU	chr4:109543014-109543227(+)$1	213	75	106	24.8351
AGUUUUAAAACCUGAAAUUGUUUUUUAAAGC	chr12:56556532-56556796(-)$1	264	196	227	26.3589
CCUGUCUUUACACCAAAAUAAAGUAUUGACA	chr12:121014555-121014772(+)$1	217	98	129	23.3178
GGUUGUUUUUGAAUAUAGAAGGAAGAACAGC	chr6:150132344-150132630(+)$1	286	215	246	25.3197
GGAAUAUAUGUUUGCCAAUCUCCUUGUUUUC	chr12:6640965-6641203(+)$1	238	96	127	23.1941
UCAGCAUGGAAACAAGAUGAAAUUCCAUUUG	chrX:77381599-77381830(+)$1	231	76	107	22.8066
UUUUUUUUUCUACAAGUUUAAUCAAAACCAA	chr6:141167031-141167268(-)$1	237	188	219	23.2392
UCUGUCUGUCUUCUCCUAAUUCUGCAGGUGG	chr1:32799019-32799262(+)$1	243	96	127	25.8185
CAGCCCAGAUACUUCACGCAUCUAUGUGGCC	chrX:47516519-47516751(-)$1	232	59	90	24.4207
UGUUGUGAGGAAAAAUUACCUGUCUUGACUG	chr2:55200074-55200300(-)$1	226	152	183	22.6882
UAUAUUGUUUGCAGGUUUAAAUAAAACAGUG	chr2:89050241-89050505(+)$1	264	166	197	25.9768
UUACCCUGGCCAAGAUCCGCAAGGCCGCCCG	chr19:54705364-54705577(+)$1	213	35	66	22.4899
AGAGGUGGUGGAAGAGUUGAAGAAGUACCUG	chr11:57509616-57509820(+)$1	204	36	67	23.6965
AGAUUAUUUCCUCUGAAUUUCUGGGCUUGGU	chr2:62095682-62095931(-)$1	249	188	219	25.9018
UGAGGCUGCAGCCUUUUAUUUAUGUUUUCCC	chr11:57507701-57507952(+)$1	251	79	110	25.0976
GUGGUGACUUUGGAUAAUAAGGAAAAGUUUA	chr6:17615255-17615492(-)$1	237	114	145	21.8700
CCAGUUUGCUUUUCUACCAUCCGGCUGUGGC	chr11:2949617-2949841(-)$1	224	176	207	25.0002
augccuccagcaucucugacuagcuggguga	chr2:135241223-135241432(-)$1	209	167	198	20.9384
CUCUGUGGGCGCAUCAAUAAAAGCCGUCCUU	chr7:75695787-75696007(+)$1	220	83	114	23.9730
ACACGCACCCACACAGACACAGAGGGAAGGG	chr19:56185590-56185799(+)$1	209	72	103	24.9628
CUGAUUUUAUCACUUUAUGCCAAUAAUUUCA	chr6:75947447-75947683(-)$1	236	187	218	23.7464
UGUAUGUGCUCUUAGCAAAAACAUGUAUGUG	chr18:673213-673446(+)$1	233	42	73	21.5105
GAUUUUUGGAUAUUUCAAAAUAGUCUAGACC	chr20:56073165-56073421(-)$1	256	188	219	24.7878
GGGGAUGCGCAUUAAACUUCUUUUGCCCCCU	chr11:62392540-62392763(-)$1	223	163	194	24.6850
CACCACCAUUAAAGCAUUUUCAUAGUGUGUG	chr9:140137951-140138196(+)$1	245	181	212	22.7427
UCAUUUCACGAAUAAAAGUUACUACGUGAAA	chr2:47710037-47710331(+)$1	294	22	53	21.4653
AAGGAAAAUGACUCAUCAUCUCCAUUUUCUU	chr18:47016784-47017023(-)$1	239	66	97	26.8024
GUUUGGUCCUUGAACAAGAUGUGGGCCUUGC	chr16:56395752-56395991(-)$1	239	6	37	23.1630
GGCCGCUCCUCCCUCAGAAAAAGGCAGUGGC	chr17:76220234-76220485(+)$1	251	206	237	24.0403
ggucugaggccuuccccccuacagccucucc	chr11:17402591-17402893(+)$1	302	66	97	24.5899
UAUUCUGUCUUCCUUUUUUAGUGGCUUUGAA	chr1:151374199-151374412(+)$1	213	72	103	23.2648
GUCGCUUGGAACCCACUCACACCAAUCCAGU	chr20:33128504-33128791(+)$1	287	13	44	19.3713
GGGCUAUGUGUGUUUUUCUUCGGGGCAGGGC	chr19:896453-896686(-)$1	233	187	218	24.4217
GCAGCCAUGGCCCUACGCUACCCUAUGGCCG	chr19:5690418-5690625(+)$1	207	94	125	24.8827
AGGGGGUGCCCUGAAACCAAACUGGAAGCCC	chr19:42751753-42751996(-)$1	243	105	136	22.8840
AUACCAUAUACCUUUUAAAACACAGUGGCAG	chr4:89442881-89443104(-)$1	223	113	144	24.4367

#DB
(...(((((.............)))))))))	chr11:8704257-8704463(+)$1	1	70	101	23.7451
(((((((((((............)))).)).	chr2:85133460-85133701(+)$1	1	34	65	23.5525
(((...(((((...........).)))).))	chr1:205683199-205683443(-)$1	1	107	138	25.0974
.((((..((((...........)))).))))	chr3:183901632-183901868(+)$1	1	135	166	23.3068
.((((((((((...........)))))))))	chr12:56119262-56119511(-)$1	1	190	221	25.0524
((..((((................))))...	chr11:65622261-65622505(-)$1	1	191	222	22.9366
.(((((((((.............))))))))	chr17:61666471-61666738(+)$1	1	85	116	26.2606
.(((((((.((...........)).))))))	chr16:31202278-31202509(+)$1	1	190	221	24.4460
((((.((.(((..............)))..)	chr6:31637594-31637842(+)$1	1	99	130	21.6816
(((((.(((((...........))))).)))	chr19:49990764-49990970(+)$1	1	173	204	23.7513
.((((((((..............))))))))	chr15:49170865-49171140(+)$1	1	109	140	21.9161
(((((((((.............)))))))))	chr7:141450019-141450241(+)$1	1	122	153	25.5829
(((((((((..............))))))))	chr15:91426452-91426683(+)$1	1	84	115	25.3868
.((((((((.............)))))))).	chr4:39456052-39456287(-)$1	1	54	85	22.1184
...(((((..............)))))...)	chr7:96318069-96318310(-)$1	1	8	39	23.4658
(((...(((((...........))))).)))	chr1:201975079-201975320(+)$1	1	125	156	24.4168
((((((((................))).).)	chr9:86583887-86584147(-)$1	1	202	233	23.2252
(((....((((..............))))..	chr16:23592253-23592543(-)$1	1	212	243	20.7857
.(((((((((...............))))))	chr22:41166243-41166485(-)$1	1	80	111	20.8821
.(((((((................)))))))	chr1:226107915-226108192(-)$1	1	218	249	24.3151
((((...((((................))))	chr7:72983975-72984224(-)$1	1	32	63	20.9376
(((((..((((...........)))))))))	chr11:6634121-6634359(-)$1	1	130	161	23.6515
(((...((((..............)))))))	chr6:33243473-33243675(+)$1	1	126	157	22.9005
((((((..((............))..)))))	chr11:64012581-64012827(-)$1	1	45	76	22.9448
(((((((((((...........)))))))))	chr1:11979762-11980071(-)$1	1	73	104	26.0046
((.....((((............))))...)	chr11:61569194-61569414(-)$1	1	170	201	23.8770
..(((((((..............))))))).	chr4:109543014-109543227(+)$1	1	75	106	24.8351
.(((((((((............)))))))))	chr12:56556532-56556796(-)$1	1	196	227	26.3589
)))(((..(((...........)))..))).	chr12:121014555-121014772(+)$1	1	98	129	23.3178
.(((((((((............)))))))))	chr6:150132344-150132630(+)$1	1	215	246	25.3197
((((.(((................))).)))	chr12:6640965-6641203(+)$1	1	96	127	23.1941
((((.((((((...........)))))))))	chrX:77381599-77381830(+)$1	1	76	107	22.8066
(((..((((..............))))..))	chr6:141167031-141167268(-)$1	1	188	219	23.2392
(((((((((..............))))))))	chr1:32799019-32799262(+)$1	1	96	127	25.8185
(((.(((.(((...........))).)))..	chrX:47516519-47516751(-)$1	1	59	90	24.4207
.((.((.((((...........)))).)).)	chr2:55200074-55200300(-)$1	1	152	183	22.6882
.(((((((((.............))))))))	chr2:89050241-89050505(+)$1	1	166	197	25.9768
...((((((((...........)))))...)	chr19:54705364-54705577(+)$1	1	35	66	22.4899
(.(((((.(..............).))))).	chr11:57509616-57509820(+)$1	1	36	67	23.6965
((((((..(((...........)))..))))	chr2:62095682-62095931(-)$1	1	188	219	25.9018
.((((..(((............)))....))	chr11:57507701-57507952(+)$1	1	79	110	25.0976
(((((((((((............))))))..	chr6:17615255-17615492(-)$1	1	114	145	21.8700
(((....(((............)))..))))	chr11:2949617-2949841(-)$1	1	176	207	25.0002
.)))))(((((...........))))).)))	chr2:135241223-135241432(-)$1	1	167	198	20.9384
)...)))(((............)))(.((((	chr7:75695787-75696007(+)$1	1	83	114	23.9730
((.(.(.(((.............)))..).)	chr19:56185590-56185799(+)$1	1	72	103	24.9628
.(((..((((............))))..)))	chr6:75947447-75947683(-)$1	1	187	218	23.7464
(((((((((...............)))))))	chr18:673213-673446(+)$1	1	42	73	21.5105
....(((((((...........)))))))..	chr20:56073165-56073421(-)$1	1	188	219	24.7878
((((....(((............))))))))	chr11:62392540-62392763(-)$1	1	163	194	24.6850
.((((((((((...........))))).)))	chr9:140137951-140138196(+)$1	1	181	212	22.7427
...(((((((..............)))))))	chr2:47710037-47710331(+)$1	1	22	53	21.4653
((((((((((............)))))))))	chr18:47016784-47017023(-)$1	1	66	97	26.8024
((..(((((.............)))))..))	chr16:56395752-56395991(-)$1	1	6	37	23.1630
((((((((((...........))).))))))	chr17:76220234-76220485(+)$1	1	206	237	24.0403
((...(((((.............)))))...	chr11:17402591-17402893(+)$1	1	66	97	24.5899
(.....(((.............)))....))	chr1:151374199-151374412(+)$1	1	72	103	23.2648
.(((((.(((...............))))))	chr20:33128504-33128791(+)$1	1	13	44	19.3713
.((((.(((.(...........).))).)))	chr19:896453-896686(-)$1	1	187	218	24.4217
((.(((((((............))))))).)	chr19:5690418-5690625(+)$1	1	94	125	24.8827
.((((((..((............))..))))	chr19:42751753-42751996(-)$1	1	105	136	22.8840
.((((...(((.............)))...)	chr4:89442881-89443104(-)$1	1	113	144	24.4367

#PSSM
[ : 0.17	f : 0.12	e : 0.09	= : 0.09	" : 0.08	: : 0.08	d : 0.06	i : 0.04	c : 0.04	b : 0.04	g : 0.03	$ : 0.01	% : 0.01	a : 0.01	o : 0.01	# : 0.01	h : 0.01	
f : 0.14	i : 0.12	d : 0.12	e : 0.12	= : 0.09	g : 0.06	c : 0.06	b : 0.06	" : 0.04	h : 0.03	% : 0.01	[ : 0.01	3 : 0.01	# : 0.01	: : 0.01	$ : 0.01	
e : 0.14	i : 0.12	f : 0.12	d : 0.09	= : 0.09	g : 0.08	c : 0.06	" : 0.04	! : 0.03	h : 0.03	$ : 0.03	[ : 0.03	b : 0.01	% : 0.01	3 : 0.01	# : 0.01	: : 0.01	
e : 0.14	g : 0.11	i : 0.11	= : 0.09	" : 0.08	d : 0.08	f : 0.08	c : 0.06	! : 0.04	# : 0.04	h : 0.03	$ : 0.03	[ : 0.03	3 : 0.01	a : 0.01	
e : 0.16	g : 0.12	i : 0.11	= : 0.09	" : 0.08	d : 0.08	[ : 0.06	c : 0.06	# : 0.04	h : 0.03	f : 0.03	$ : 0.03	! : 0.03	a : 0.01	b : 0.01	
e : 0.12	i : 0.11	g : 0.11	= : 0.09	c : 0.09	" : 0.08	! : 0.06	f : 0.06	b : 0.04	# : 0.04	d : 0.03	[ : 0.03	h : 0.03	$ : 0.03	a : 0.01	
e : 0.16	i : 0.11	g : 0.11	! : 0.09	c : 0.09	d : 0.08	= : 0.08	# : 0.04	f : 0.04	[ : 0.04	b : 0.03	h : 0.03	" : 0.03	$ : 0.01	
d : 0.19	c : 0.16	e : 0.14	i : 0.11	g : 0.09	= : 0.08	! : 0.06	[ : 0.04	h : 0.03	f : 0.03	# : 0.01	" : 0.01	
c : 0.22	d : 0.17	e : 0.12	i : 0.11	= : 0.08	y : 0.06	g : 0.06	h : 0.03	f : 0.03	[ : 0.01	w : 0.01	b : 0.01	a : 0.01	! : 0.01	
c : 0.19	d : 0.16	w : 0.11	e : 0.09	v : 0.08	i : 0.08	y : 0.06	= : 0.04	b : 0.04	g : 0.04	f : 0.03	x : 0.01	[ : 0.01	
v : 0.14	w : 0.14	u : 0.14	d : 0.11	c : 0.09	e : 0.08	y : 0.06	x : 0.04	a : 0.03	= : 0.03	b : 0.03	f : 0.03	g : 0.01	t : 0.01	
t : 0.30	u : 0.22	w : 0.17	v : 0.16	y : 0.08	x : 0.04	
t : 0.30	u : 0.22	w : 0.17	v : 0.16	y : 0.08	x : 0.04	
t : 0.30	u : 0.22	w : 0.17	v : 0.16	y : 0.08	x : 0.04	
t : 0.30	u : 0.22	w : 0.17	v : 0.16	y : 0.08	x : 0.04	
t : 0.30	u : 0.22	w : 0.17	v : 0.16	y : 0.08	x : 0.04	
t : 0.30	u : 0.22	w : 0.17	v : 0.16	y : 0.08	x : 0.04	
t : 0.30	u : 0.22	w : 0.17	v : 0.16	y : 0.08	x : 0.04	
t : 0.30	u : 0.22	w : 0.17	v : 0.16	y : 0.08	x : 0.04	
t : 0.30	u : 0.22	w : 0.17	v : 0.16	y : 0.08	x : 0.04	
t : 0.30	u : 0.22	w : 0.17	v : 0.16	y : 0.08	x : 0.04	
t : 0.29	u : 0.22	w : 0.17	v : 0.16	y : 0.08	x : 0.04	c : 0.01	
w : 0.16	e : 0.12	c : 0.12	u : 0.08	y : 0.08	v : 0.08	d : 0.06	= : 0.04	i : 0.04	x : 0.04	a : 0.03	b : 0.03	g : 0.03	h : 0.01	f : 0.01	
c : 0.16	e : 0.14	d : 0.11	i : 0.09	y : 0.08	= : 0.06	w : 0.06	b : 0.04	x : 0.04	g : 0.04	] : 0.03	h : 0.03	f : 0.03	a : 0.01	v : 0.01	
c : 0.20	d : 0.16	e : 0.14	i : 0.09	= : 0.08	g : 0.08	] : 0.04	w : 0.03	h : 0.03	x : 0.03	f : 0.03	y : 0.01	2 : 0.01	b : 0.01	
d : 0.17	e : 0.16	c : 0.12	i : 0.11	g : 0.11	= : 0.08	2 : 0.08	h : 0.03	f : 0.03	4 : 0.03	y : 0.01	] : 0.01	a : 0.01	
e : 0.19	d : 0.11	i : 0.11	g : 0.11	c : 0.11	2 : 0.09	= : 0.08	f : 0.04	] : 0.03	h : 0.03	4 : 0.03	y : 0.01	[ : 0.01	
] : 0.11	i : 0.11	g : 0.11	e : 0.09	d : 0.09	= : 0.09	f : 0.08	c : 0.06	3 : 0.06	2 : 0.06	h : 0.03	4 : 0.03	b : 0.01	: : 0.01	
e : 0.12	i : 0.11	g : 0.11	= : 0.09	3 : 0.09	d : 0.08	c : 0.08	f : 0.08	2 : 0.04	b : 0.03	h : 0.03	a : 0.03	4 : 0.03	] : 0.01	F : 0.01	
e : 0.12	i : 0.12	3 : 0.11	= : 0.09	d : 0.08	g : 0.08	f : 0.08	c : 0.06	] : 0.06	h : 0.04	b : 0.03	2 : 0.03	5 : 0.01	0 : 0.01	F : 0.01	
e : 0.12	i : 0.12	f : 0.11	d : 0.09	= : 0.09	3 : 0.06	g : 0.06	b : 0.06	c : 0.06	] : 0.04	h : 0.03	5 : 0.01	: : 0.01	2 : 0.01	0 : 0.01	F : 0.01	a : 0.01	

#score	1470.9444226733515
#seq	62
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_CDS_m1_run2.txt

#BEAR
!bb"""ccc!!ccc!!bboooooobb22ccc22cc	chr16:30078846-30079082(+)$1	236	94	129	12.7102
gggggg%%%%%%ddddoooooodddd4444ggggg	chr16:30079864-30080096(+)$1	232	134	169	15.9893
bb[bb[bb[a!!ddddoooooodddd22a]bb]bb	chr16:29818267-29818520(+)$1	253	157	192	17.2390
ccc[eeeee"""ddddoooooodddd]eeeee333	chr16:204184-204454(+)$1	270	119	154	17.1799
hhh[bb"""cccddddoooooodddd22cccbb]h	chr19:3984113-3984437(-)$1	324	202	237	15.4045
b[bb[ccc[ccc!!cccnnnnncccccc]ccc]bb	chr8:146015122-146015411(-)$1	289	137	172	10.0983
bb[bb[bb[a!!ddddoooooodddd22a]bb]bb	chr16:29818320-29818640(+)$1	320	104	139	17.2390
gggggg%%%%%%ddddoooooodddd4444ggggg	chr16:30079896-30080121(+)$1	225	102	137	15.9893
ff[cccccc[ccc!!ddddllldddd22ccc]ccc	chr16:30080038-30080308(+)$1	270	76	111	12.2826
:ccc[dddd[eeeeeooooooeeeee22dddd]cc	chr16:88870214-88870492(+)$1	278	5	40	11.8123
d$$$$$dddd[bb[bboooooobbbb22dddd333	chr19:1241671-1242017(+)$1	346	178	213	11.7437
ccc[eeeee"""ddddoooooodddd]eeeee333	chr16:204265-204551(+)$1	286	38	73	17.1799
hbb[eeeee"""ddddmmmmdddd333eeeee]bb	chr16:30078454-30078695(+)$1	241	49	84	12.2850
ffffff!!gggggggddddllldddd22ggggggg	chr7:75931979-75932258(+)$1	279	136	171	11.1362
dddd[bb$$$$$ddddmmmmddddbb]dddda]bb	chr7:75677322-75677621(+)$1	299	83	118	11.2881
:ccc[ccc$$$$$ddddmmmmdddd4444ccc]cc	chr16:88870116-88870414(+)$1	298	154	189	13.8361
##==========ddddoooooodddd55555====	chr11:810132-810381(+)$1	249	24	59	14.6006
!=============bboooooobb]==========	chr15:75230176-75230486(-)$1	310	5	40	13.1440
ccccccbb[ccc[cccoooooocccccc]bb]ccc	chr16:30081117-30081420(+)$1	303	264	299	12.5361
Cbb[eeeee"""ddddmmmmdddd333eeeee]bb	chr16:30078495-30078788(+)$1	293	8	43	11.7318
"""a[ccc####ddddoooooodddd22ccca]ee	chr2:55276993-55277273(-)$1	280	67	102	19.0796
eee[dddd[accc[bboooooobbccc]a]dddde	chr17:80049218-80049476(-)$1	258	154	189	11.5204
""ffffff$$$$$cccooooooccc55555fffff	chr2:55276878-55277193(-)$1	315	226	261	12.0939
cc[a[bb####bbcccnnnnnccc]bb4444bba]	chr1:35658199-35658561(-)$1	362	275	310	11.0649
!bb"""ccc!!ccc!!bboooooobb22ccc22cc	chr16:30078796-30079046(+)$1	250	144	179	12.7102
!cccdddd####ddddnnnnndddd4444dddd]c	chr16:58231517-58231871(-)$1	354	310	345	14.7435
cc"""dddd"""ddddoooooodddd333dddd33	chr19:49611208-49611487(+)$1	279	33	68	18.6817
EEEEffffff!!ddddoooooodddd4444fffff	chr16:30080829-30081092(+)$1	263	124	159	13.0953
ddddddd$$$$$ddddoooooodddd666666ddd	chr22:21272027-21272359(+)$1	332	93	128	14.3284
ffffff!!gggggggddddllldddd22ggggggg	chr7:75932086-75932314(+)$1	228	29	64	11.1362

#otherMatches

#Seq PSSM
CCCCAAGUUAUCAAAUCCAAGGGCGGUGUUGUGGG	chr16:30078846-30079082(+)$1	236	94	129	12.7102
AAAUGGCGAGACUACCACCCAAGGUGAGAACUGUU	chr16:30079864-30080096(+)$1	232	134	169	15.9893
gccgccgucgcugccgcgcccccggccccugccgc	chr16:29818267-29818520(+)$1	253	157	192	17.2390
GCGCGCUUCCCCGCCGACUUCACGGCCGAGGCCCA	chr16:204184-204454(+)$1	270	119	154	17.1799
GGUGUGCAAGGCGGGCAUCAUCGCCUCGGCCCGGG	chr19:3984113-3984437(-)$1	324	202	237	15.4045
CUGCUGGCCGCAAAGUGGGUCUCAUUGCUGCCCGC	chr8:146015122-146015411(-)$1	289	137	172	10.0983
gccgccgucgcugccgcgcccccggccccugccgc	chr16:29818320-29818640(+)$1	320	104	139	17.2390
AAAUGGCGAGACUACCACCCAAGGUGAGAACUGUU	chr16:30079896-30080121(+)$1	225	102	137	15.9893
UCUGACCCCUUCCUCUUCUCUUAGGGUUGGAUGGG	chr16:30080038-30080308(+)$1	270	76	111	12.2826
UCGCCGCGCACUCCGCCGCCAUGGAGCAGCGCCGC	chr16:88870214-88870492(+)$1	278	5	40	11.8123
augcugcccgccgcgcugcuccgccgcccgggacu	chr19:1241671-1242017(+)$1	346	178	213	11.7437
GCGCGCUUCCCCGCCGACUUCACGGCCGAGGCCCA	chr16:204265-204551(+)$1	286	38	73	17.1799
UGAUGGGAAACCCUAGCUAACUAGUCCUUCCCCUC	chr16:30078454-30078695(+)$1	241	49	84	12.2850
CGACCAGGCCUUCGGGCUGCCCCGGCUGCCGGAGG	chr7:75931979-75932258(+)$1	279	136	171	11.1362
GUGGAGGUCGUUGGAGUCACUUCCCCGUCACCAGC	chr7:75677322-75677621(+)$1	299	83	118	11.2881
cgcgccgccgccccgggcccccccgcAUCGCGCCG	chr16:88870116-88870414(+)$1	298	154	189	13.8361
CGCCCGGCGGCCCCGGGAUGGGCCGGCAGGAGGCC	chr11:810132-810381(+)$1	249	24	59	14.6006
GUCGCAGUGGGCGGGCCUACGUGCUCCGCCCGCUG	chr15:75230176-75230486(-)$1	310	5	40	13.1440
UGGGUGGAUGGGACUCGGAGAAGAGCCCUUCUCAC	chr16:30081117-30081420(+)$1	303	264	299	12.5361
UGAUGGGAAACCCUAGCUAACUAGUCCUUCCCCUC	chr16:30078495-30078788(+)$1	293	8	43	11.7318
CCUGAUGGACUUCGGAAAUGACUUCGUgccgccgg	chr2:55276993-55277273(-)$1	280	67	102	19.0796
UGCUGCGGGCCAGCGGACGCACCCCUGAGGCCGUG	chr17:80049218-80049476(-)$1	258	154	189	11.5204
CCGUGUGGAccccgccagccccggcucccgccgcg	chr2:55276878-55277193(-)$1	315	226	261	12.0939
GCAGCGCACCACCAGCCUCCAGCUCGGCCCCGCCC	chr1:35658199-35658561(-)$1	362	275	310	11.0649
CCCCAAGUUAUCAAAUCCAAGGGCGGUGUUGUGGG	chr16:30078796-30079046(+)$1	250	144	179	12.7102
ACGAGGCUCACGUCCCGAGCUGGGGGUAAAGCCGU	chr16:58231517-58231871(-)$1	354	310	345	14.7435
CGGGACCGGAAGCGGCGAAGCAGCCGGAGUCGGGA	chr19:49611208-49611487(+)$1	279	33	68	18.6817
CGUCACAGCGCUGCGCCGCACAGUGCCCCCCGCUG	chr16:30080829-30081092(+)$1	263	124	159	13.0953
GAGGCCCUUCCUCGGCCCCAAAGCCGUCUGCCGGG	chr22:21272027-21272359(+)$1	332	93	128	14.3284
CGACCAGGCCUUCGGGCUGCCCCGGCUGCCGGAGG	chr7:75932086-75932314(+)$1	228	29	64	11.1362

#DB
.((...(((..(((..((......))..)))..))	chr16:30078846-30079082(+)$1	1	94	129	12.7102
((((((......((((......))))....)))))	chr16:30079864-30080096(+)$1	1	134	169	15.9893
((.((.((.(..((((......))))..).)).))	chr16:29818267-29818520(+)$1	1	157	192	17.2390
(((.(((((...((((......)))).)))))...	chr16:204184-204454(+)$1	1	119	154	17.1799
(((.((...(((((((......))))..))))).)	chr19:3984113-3984437(-)$1	1	202	237	15.4045
(.((.(((.(((..(((.....)))))).))).))	chr8:146015122-146015411(-)$1	1	137	172	10.0983
((.((.((.(..((((......))))..).)).))	chr16:29818320-29818640(+)$1	1	104	139	17.2390
((((((......((((......))))....)))))	chr16:30079896-30080121(+)$1	1	102	137	15.9893
((.((((((.(((..((((...))))..))).)))	chr16:30080038-30080308(+)$1	1	76	111	12.2826
.(((.((((.(((((......)))))..)))).))	chr16:88870214-88870492(+)$1	1	5	40	11.8123
(.....((((.((.((......))))..))))...	chr19:1241671-1242017(+)$1	1	178	213	11.7437
(((.(((((...((((......)))).)))))...	chr16:204265-204551(+)$1	1	38	73	17.1799
(((.(((((...((((....))))...))))).))	chr16:30078454-30078695(+)$1	1	49	84	12.2850
((((((..(((((((((((...))))..)))))))	chr7:75931979-75932258(+)$1	1	136	171	11.1362
((((.((.....((((....)))))).))))).))	chr7:75677322-75677621(+)$1	1	83	118	11.2881
.(((.(((.....((((....))))....))).))	chr16:88870116-88870414(+)$1	1	154	189	13.8361
..((((((((((((((......)))).....))))	chr11:810132-810381(+)$1	1	24	59	14.6006
.(((((((((((((((......)).))))))))))	chr15:75230176-75230486(-)$1	1	5	40	13.1440
((((((((.(((.(((......)))))).)).)))	chr16:30081117-30081420(+)$1	1	264	299	12.5361
(((.(((((...((((....))))...))))).))	chr16:30078495-30078788(+)$1	1	8	43	11.7318
...(.(((....((((......))))..)))).))	chr2:55276993-55277273(-)$1	1	67	102	19.0796
(((.((((.((((.((......))))).).)))))	chr17:80049218-80049476(-)$1	1	154	189	11.5204
..((((((.....(((......))).....)))))	chr2:55276878-55277193(-)$1	1	226	261	12.0939
((.(.((....(((((.....))).))....))).	chr1:35658199-35658561(-)$1	1	275	310	11.0649
.((...(((..(((..((......))..)))..))	chr16:30078796-30079046(+)$1	1	144	179	12.7102
.(((((((....((((.....))))....)))).)	chr16:58231517-58231871(-)$1	1	310	345	14.7435
((...((((...((((......))))...))))..	chr19:49611208-49611487(+)$1	1	33	68	18.6817
((((((((((..((((......))))....)))))	chr16:30080829-30081092(+)$1	1	124	159	13.0953
)))((((.....((((......))))......)))	chr22:21272027-21272359(+)$1	1	93	128	14.3284
((((((..(((((((((((...))))..)))))))	chr7:75932086-75932314(+)$1	1	29	64	11.1362

#PSSM
c : 0.16	! : 0.13	b : 0.10	f : 0.10	d : 0.10	g : 0.06	h : 0.06	: : 0.06	" : 0.06	# : 0.03	C : 0.03	e : 0.03	E : 0.03	
c : 0.26	b : 0.19	f : 0.10	g : 0.06	d : 0.06	" : 0.06	h : 0.03	[ : 0.03	$ : 0.03	# : 0.03	= : 0.03	e : 0.03	E : 0.03	
c : 0.19	b : 0.16	[ : 0.13	f : 0.10	g : 0.06	d : 0.06	= : 0.06	" : 0.06	h : 0.03	$ : 0.03	e : 0.03	E : 0.03	
[ : 0.19	c : 0.16	" : 0.10	b : 0.10	f : 0.10	g : 0.06	d : 0.06	= : 0.06	a : 0.06	$ : 0.03	E : 0.03	
[ : 0.19	e : 0.13	f : 0.13	" : 0.10	b : 0.10	d : 0.10	g : 0.06	c : 0.06	= : 0.06	$ : 0.03	
c : 0.16	d : 0.16	e : 0.13	f : 0.13	b : 0.10	" : 0.06	g : 0.06	[ : 0.06	= : 0.06	$ : 0.03	
c : 0.19	d : 0.19	b : 0.16	e : 0.13	% : 0.06	! : 0.06	= : 0.06	f : 0.06	" : 0.03	
c : 0.19	d : 0.16	e : 0.13	b : 0.10	% : 0.06	! : 0.06	$ : 0.06	= : 0.06	f : 0.06	" : 0.03	# : 0.03	
[ : 0.16	e : 0.13	$ : 0.13	c : 0.10	d : 0.10	# : 0.10	% : 0.06	g : 0.06	= : 0.06	" : 0.03	f : 0.03	
" : 0.16	$ : 0.13	a : 0.10	c : 0.10	# : 0.10	! : 0.06	% : 0.06	[ : 0.06	g : 0.06	= : 0.06	d : 0.03	f : 0.03	
! : 0.16	" : 0.16	c : 0.16	$ : 0.13	# : 0.10	% : 0.06	g : 0.06	= : 0.06	e : 0.03	[ : 0.03	
c : 0.23	" : 0.16	$ : 0.13	! : 0.10	% : 0.06	b : 0.06	g : 0.06	= : 0.06	# : 0.06	e : 0.03	
d : 0.53	c : 0.13	b : 0.06	g : 0.06	$ : 0.06	! : 0.03	e : 0.03	= : 0.03	[ : 0.03	
d : 0.56	c : 0.16	! : 0.06	[ : 0.06	g : 0.06	e : 0.03	= : 0.03	
d : 0.56	c : 0.13	! : 0.10	b : 0.10	g : 0.06	e : 0.03	
d : 0.66	c : 0.13	b : 0.10	! : 0.06	o : 0.03	
o : 0.60	d : 0.13	m : 0.10	b : 0.06	n : 0.06	c : 0.03	
o : 0.60	m : 0.13	n : 0.10	d : 0.10	b : 0.06	
o : 0.66	m : 0.13	n : 0.10	d : 0.10	
o : 0.66	m : 0.13	n : 0.10	l : 0.10	
o : 0.66	n : 0.10	l : 0.10	d : 0.10	m : 0.03	
o : 0.63	d : 0.16	l : 0.10	n : 0.03	e : 0.03	c : 0.03	
d : 0.66	c : 0.13	b : 0.10	o : 0.06	e : 0.03	
d : 0.66	c : 0.13	b : 0.10	o : 0.06	e : 0.03	
d : 0.56	b : 0.13	c : 0.13	3 : 0.06	] : 0.06	e : 0.03	
d : 0.49	b : 0.16	c : 0.10	3 : 0.06	4 : 0.06	e : 0.03	= : 0.03	5 : 0.03	
2 : 0.36	4 : 0.16	] : 0.10	c : 0.10	3 : 0.10	5 : 0.06	= : 0.03	b : 0.03	6 : 0.03	
2 : 0.36	4 : 0.19	e : 0.13	c : 0.06	5 : 0.06	d : 0.03	= : 0.03	] : 0.03	3 : 0.03	6 : 0.03	
4 : 0.19	c : 0.16	e : 0.13	a : 0.10	d : 0.10	] : 0.06	g : 0.06	5 : 0.06	= : 0.03	3 : 0.03	6 : 0.03	
c : 0.23	d : 0.16	4 : 0.13	e : 0.13	] : 0.10	g : 0.06	5 : 0.06	= : 0.03	b : 0.03	6 : 0.03	
c : 0.23	d : 0.19	g : 0.13	e : 0.13	b : 0.10	f : 0.06	5 : 0.03	= : 0.03	4 : 0.03	6 : 0.03	
d : 0.16	g : 0.13	b : 0.13	e : 0.13	2 : 0.06	c : 0.06	] : 0.06	a : 0.06	= : 0.06	f : 0.06	6 : 0.03	
] : 0.30	g : 0.13	d : 0.13	3 : 0.10	2 : 0.06	b : 0.06	c : 0.06	= : 0.06	f : 0.06	
c : 0.19	b : 0.19	g : 0.13	3 : 0.13	] : 0.06	= : 0.06	d : 0.06	f : 0.06	e : 0.03	a : 0.03	
c : 0.23	b : 0.19	g : 0.13	3 : 0.13	= : 0.06	e : 0.06	f : 0.06	h : 0.03	] : 0.03	d : 0.03	

#score	413.8814774046599
#seq	30
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_CDS_m1_run2.txt

#BEAR
dd[ggggggg[ccc!!ccclllccc]cccggggggg]ddd	chr11:607176-607427(+)$1	251	80	120	13.4529
gggg[a[dddd[ccc[bbmmmmbb]cccdddd]a]ggggg	chr22:45724171-45724398(+)$1	227	121	161	13.9003
ccc[ccc[bb[gggggggmmmmggggggg]bb]cccccc2	chr19:56127160-56127441(+)$1	281	153	193	13.6590
fcccdddd"""bb[ddddmmmmdddd]bb4444dddd]cc	chr5:73931125-73931377(-)$1	252	112	152	11.4275
dddddffffff[ccc[bbmmmmbb333cccffffff22dd	chr8:144671086-144671337(-)$1	251	63	103	12.7085
gggggg[gggggggddddllldddd]ggggggg]gggggg	chr21:34923316-34923567(+)$1	251	132	172	12.9302
b[dddd[ccc!!bb[cccmmmmccc]bb]cccdddd]bb]	chr9:134350650-134350917(+)$1	267	87	127	12.2914
"""ccc[bba[gggggggnnnnnggggggg]a]bb]cccb	chr17:79860493-79860770(-)$1	277	93	133	11.1181
ffff"""bb[ccc!!bboooooobb]ccc]bb333fffff	chr16:1827054-1827309(+)$1	255	147	187	12.4811
iiiiiiiii$$$$$ddddmmmmdddd22iiiiiiiii]ee	chr14:105715317-105715582(-)$1	265	132	172	12.7885
hhhhhh"""bbccc!!bbmmmmbb22ccc]bb4444hhhh	chr16:89346795-89347072(-)$1	277	49	89	12.9376
[dddd####ffffffccclllccc4444ffffff4444dd	chr9:138378804-138379087(+)$1	283	224	264	11.9404
!ccc"""bb[a[ffffffmmmmffffff]a]bb333ccc2	chr6:138752171-138752414(-)$1	243	80	120	12.6002
======[ccc"""cccccclllccc]ccc]ccc=======	chr19:59074520-59074782(+)$1	262	140	180	14.2890
cchhhhhhhh"""cccooooooccchhhhhhhh333ccc2	chr11:71725465-71725716(-)$1	251	183	223	11.0927
hhhhhh"""bbccc!!bbmmmmbb22ccc]bb4444hhhh	chr16:89346902-89347153(-)$1	251	130	170	12.9376
ccc[eeeeeccc####bbmmmmbb333ccc]eeeeecccG	chr6:31599538-31599804(+)$1	266	106	146	13.8106
!ffffff!!iiiiiiiiimmmmiiiiiiiii]ffffff22	chr16:89346251-89346497(-)$1	246	62	102	12.9325
fff"""cccdddd[ddddmmmmdddddddd]ccc333fff	chr2:227659953-227660188(-)$1	235	184	224	11.8895
dd!!ccc[ccc!!a[cccmmmmccc]a22ccc22ccc22d	chr14:75265143-75265445(+)$1	302	2	42	14.0894
:dddd!!ggggggg[cccooooooccc]ggggggg22ddd	chr22:50279969-50280274(+)$1	305	240	280	12.0825
eee[a!!bb[ccc[bb[aooooooa]bbccc22bb22a]e	chr19:50099510-50099770(+)$1	260	124	164	11.0798
gggg[a[dddd[ccc[bbmmmmbb]cccdddd]a]ggggg	chr22:45724198-45724429(+)$1	231	94	134	13.9003
[dddd"""ccc"""ddddmmmmdddd22ccc22dddd22=	chr16:87735789-87736041(-)$1	252	35	75	13.2306
ddd[ccc[eeeeeddddmmmmdddd22eeeee]ccc]ddd	chr10:77159500-77159768(-)$1	268	162	202	10.5756
eee[a!!ggggggg[cccmmmmcccggggggg]aeeeee]	chr19:4048131-4048399(-)$1	268	195	235	15.1620
f[a!!ccc!!bb"""cccmmmmcccbb22ccc22a]ffff	chr14:23450758-23451026(-)$1	268	16	56	12.9242
:eeeee!!ffffff"""ammmma333ffffff22eeeee:	chr17:37618278-37618527(+)$1	249	78	118	10.7912
cc!!eeeeebb!!cccbbnnnnnbb]ccc]bb]eeeeecc	chr20:31022638-31022921(+)$1	283	40	80	10.9811
[dddd"""dddd"""bboooooobb22dddddddd]afff	chr16:72992007-72992257(-)$1	250	131	171	10.9918
[bb[dddd[iiiiiiiiiooooooiiiiiiiiidddd]bb	chr2:97482293-97482571(+)$1	278	194	234	11.4578
ddccc[bbccc[a[a[aooooooa]a]a]ccc]bb22ccc	chr6:1313031-1313292(+)$1	261	206	246	12.3630
$dddd!!ccccccddddmmmmdddd]ccc]ccc22dddd3	chr18:30350889-30351153(+)$1	264	132	172	11.5680
cccbba!!==========lll==========22a]bb333	chr2:227662866-227663182(-)$1	316	136	176	13.9250
ddd[ccc[a[iiiiiiiiillliiiiiiiii22a]ccc]d	chr2:236579462-236579692(+)$1	230	31	71	13.6691
ddd:===========[bbmmmmbb]===========:ggg	chr11:637267-637555(+)$1	288	141	181	13.5595
b]ccc:ccc[a[ccc[bbmmmmbb]ccc]a]cccdddd##	chr1:2160056-2160328(+)$1	272	78	118	11.8024
ffff:eeeee[ccc[a[allla]a]ccc]eeeeeeeeee[	chr7:1097271-1097520(-)$1	249	114	154	9.9644
fff####ccc"""eeeeemmmmeeeeeccc]ffffff]a]	chr8:144671768-144671997(-)$1	229	35	75	12.4140
[ggggggg[a[gggggggmmmmgggggggaggggggg]a]	chr17:80197768-80198012(+)$1	244	38	78	14.2579
:==========ddddcccmmmmccc]dddd]=========	chr16:31091061-31091340(+)$1	279	152	192	13.0619
[dddd"""eeeee[ddddmmmmddddeeeeedddd]dddd	chr3:32932361-32932613(+)$1	252	86	126	11.5854
ccc[eeeee!!ccc[ddddllldddd]ccc22eeeee333	chr5:154135525-154135738(+)$1	213	121	161	11.7164
eggggggg[ffffffcccmmmmccc333ffffff]ggggg	chr16:30750794-30751075(+)$1	281	58	98	13.5427
ccc[eeeee[gggggggbbmmmmbb22gggggggeeeee]	chr21:34923265-34923516(+)$1	251	28	68	11.9261
!!a!!ccceeeee!!cccooooooccc4444eeeee]ccc	chr16:30793060-30793330(-)$1	270	154	194	12.1887
a[ffffff[a[eeeeebbmmmmbb]eeeee]a]ffffff]	chrX:153774925-153775180(+)$1	255	181	221	11.7233
ccc[eeeeeccc####bbmmmmbb333ccc]eeeeecccF	chr6:31599458-31599730(+)$1	272	186	226	13.9019
dddd[a"""ccc[eeeeemmmmeeeee]ccc22a]ddddc	chr9:138376659-138376915(+)$1	256	201	241	12.6662
ffff####eeeee[ddddmmmmddddeeeee333ffffff	chr2:227661858-227662103(-)$1	245	134	174	11.8829
"dddd"""a[bb!!ddddmmmmdddd22bb]a333dddd3	chr19:57325425-57325737(-)$1	312	197	237	13.2210
d22a]ddddiiiiiiiiimmmmiiiiiiiiidddd[hhhh	chr4:982617-982856(-)$1	239	105	145	10.9262
iiiiiiii[gggggggbbmmmmbb22gggggggiiiiiii	chr21:34923018-34923282(+)$1	264	204	244	14.7056
hhhhhhhggggggg!!ccclllcccggggggg]hhhhhhh	chr14:105715205-105715474(-)$1	269	71	111	11.5540
fcccccc[a[gggggggannnnna]ggggggg]a333ccc	chr6:138754338-138754594(-)$1	256	116	156	13.2492
ee"""a[bb####a[ccclllccc]a4444bb]a333eee	chr10:105362133-105362438(-)$1	305	50	90	13.0828
dddd[ggggggg"""bbnnnnnbb333ggggggg]dddd]	chr8:144940403-144940695(-)$1	292	145	185	12.4496
e!!bb[ccc"""ffffffmmmmffffff333cccbb333e	chr22:21799735-21800003(+)$1	268	174	214	11.3142

#otherMatches

#Seq PSSM
AGGCUGGACUUGCCAGCAGCCCCUGGGGCGGUUCAGGCUC	chr11:607176-607427(+)$1	251	80	120	13.4529
CAGCCUGCAGGUGUGGGGAGUUCUGUGCCCUGGGAGCUGC	chr22:45724171-45724398(+)$1	227	121	161	13.9003
cgguggcaggugcuggcgggggugCCAGUUCCGGCCCCGA	chr19:56127160-56127441(+)$1	281	153	193	13.6590
GGUCUGAAAAUGGGGUCUCAAAAGAUGUCUGGGUUUAUGA	chr5:73931125-73931377(-)$1	252	112	152	11.4275
GUGCCGCCACCACGCUGCCGAGGCCCUGCGGGUGGCCUGG	chr8:144671086-144671337(-)$1	251	63	103	12.7085
GCGCCAGAGUUGCCUGGGCAGCCUGUGGCAACUGUGGCGC	chr21:34923316-34923567(+)$1	251	132	172	12.9302
CACUUUUCGUGGUCGGCCUGCUGGCGGAAAUGGGAGCGGC	chr9:134350650-134350917(+)$1	267	87	127	12.2914
GAGUGGGACGGUGGGGGCGGGGGGCCCCCAGCGGUGCCAG	chr17:79860493-79860770(-)$1	277	93	133	11.1181
UGCAACUCAUGCUCAGGACCCAGCCCAGCUUGUUGUGUAG	chr16:1827054-1827309(+)$1	255	147	187	12.4811
gcgcgggggccgcggggcACGGGCUCACCUCUCGCGCAGC	chr14:105715317-105715582(-)$1	265	132	172	12.7885
GCUCGGACCUCCUGCUGAAGUCUCCACAGAGAUUCCCCGA	chr16:89346795-89347072(-)$1	277	49	89	12.9376
CAGCCAGAGGGCCAGGGGGGUCCCACAUCUGGCCGAAGGG	chr9:138378804-138379087(+)$1	283	224	264	11.9404
UCCUUGAGGCCGCCUUCUACCAAGGAGGAGACCAGCAGGC	chr6:138752171-138752414(-)$1	243	80	120	12.6002
GGGCCCACACCCCGGCAGGGAUCCUCGUCCGUGGGGUCCU	chr19:59074520-59074782(+)$1	262	140	180	14.2890
GUGGCGCGGCUGACCCAGGAGCGGGGCCGUGCCCAGGCUG	chr11:71725465-71725716(-)$1	251	183	223	11.0927
GCUCGGACCUCCUGCUGAAGUCUCCACAGAGAUUCCCCGA	chr16:89346902-89347153(-)$1	251	130	170	12.9376
GCGUGGAGGUGGGACAGGGGGACCAAACCACCCUCCUGCU	chr6:31599538-31599804(+)$1	266	106	146	13.8106
GGGUCAUAAACGGUGGGGAUGUUUCCACCGUAGUGGCUGA	chr16:89346251-89346497(-)$1	246	62	102	12.9325
CUGAGGCCUGGGGAGCUUGGGGGAGCCCCCAAGGAGCCAG	chr2:227659953-227660188(-)$1	235	184	224	11.8895
CAGGAUUGGUCAAGCAAGAAGACUUUCGGGAUAAGAUGAU	chr14:75265143-75265445(+)$1	302	2	42	14.0894
AGGUGGAGAUGCUCUUCGAGGAGACGAUGGGCAUCGACAC	chr22:50279969-50280274(+)$1	305	240	280	12.0825
GGGACCACCGGGUACACCCUACGAGUUGGCCAAGGAAGAC	chr19:50099510-50099770(+)$1	260	124	164	11.0798
CAGCCUGCAGGUGUGGGGAGUUCUGUGCCCUGGGAGCUGC	chr22:45724198-45724429(+)$1	231	94	134	13.9003
ACGGGCCAGGCACUGCCCUGCAGGGCCCGCCCCCCUGCCC	chr16:87735789-87736041(-)$1	252	35	75	13.2306
ACGGCCGGAUUAGCUGCGGCGGCGGGAUUAAUGUGGAUGU	chr10:77159500-77159768(-)$1	268	162	202	10.5756
GCGAGAAGCCGUACCUGUGCCAGCAGUGCGGCGCCGCCUU	chr19:4048131-4048399(-)$1	268	195	235	15.1620
CGGCCCUGCAGCAAUCGCACCAGCGGCAUCAGCAUGGGCU	chr14:23450758-23451026(-)$1	268	16	56	12.9242
GGACGGGAGUGGAGGAGCUUCUGGAACUUUGCAGCCGUCA	chr17:37618278-37618527(+)$1	249	78	118	10.7912
CCUUCUCUGAGAAAGGAGGAAAGCUGCCUACUACAGAGGG	chr20:31022638-31022921(+)$1	283	40	80	10.9811
UGGAGUGCCCCAAAUGCGACACGGUCCUGGGCUCCUCCCG	chr16:72992007-72992257(-)$1	250	131	171	10.9918
GCUGGCGCUGGCGCCUGCCGAGGUGCAGGUGCUGCGCGAG	chr2:97482293-97482571(+)$1	278	194	234	11.4578
cgggcggcgcggggagcggcgagggugCACGCAGCAAGCC	chr6:1313031-1313292(+)$1	261	206	246	12.3630
AGCCGGGGGUGCCCUGAAAGCUCAGAGGCGACCGACGGCG	chr18:30350889-30351153(+)$1	264	132	172	11.5680
AGCGGCAGCUCCGGCCUUGGUGAGGCUGGGGAGGACUUGA	chr2:227662866-227663182(-)$1	316	136	176	13.9250
cgggcggcggccggggccggcgcggccUCGGAGCACCGGC	chr2:236579462-236579692(+)$1	230	31	71	13.6691
GGCGGCGCUGGUGGGGGGCGUGCUGCUCAUCGGCGCGGUG	chr11:637267-637555(+)$1	288	141	181	13.5595
ggggcggcggcgggggccgggggggcccgggcgcgcggga	chr1:2160056-2160328(+)$1	272	78	118	11.8024
GAGCAGGUGCACAGGGGCCAGGGCGCUGAGCACCAGGCCU	chr7:1097271-1097520(-)$1	249	114	154	9.9644
GCCCCGCGGACCUGGCCCUCCUGGGCCUCUCGGCCGAACG	chr8:144671768-144671997(-)$1	229	35	75	12.4140
AGUGGCCUGCGUGGCUGGGAGCCCGGUCAGAGGCCGCCGG	chr17:80197768-80198012(+)$1	244	38	78	14.2579
AGAAGGGCUGCCAGACUGAAGCCAGCUCUGAGCGGCCCUU	chr16:31091061-31091340(+)$1	279	152	192	13.0619
CAGCUACGUGGGCAUUGGGCUCCCGGGCCUGAGCUUCGGC	chr3:32932361-32932613(+)$1	252	86	126	11.5854
cgcggggcgccgggACUUCGUGGAAGCCCCCCCGCCCAAG	chr5:154135525-154135738(+)$1	213	121	161	11.7164
GCCUGAGGGUUCAGUAGAGGAGUCUGAGGCUGAAGCCUCA	chr16:30750794-30751075(+)$1	281	58	98	13.5427
GGCAGCCUGUGGCAACUGGGGCACUAGAGUUGCCUGGGCC	chr21:34923265-34923516(+)$1	251	28	68	11.9261
AGCAGCCAUGGGGAAGGGCAAAACCCCAAAACCCUAGUGG	chr16:30793060-30793330(-)$1	270	154	194	12.1887
gggcgccUGGGCUGAGCGGACCCGCCUCAGGCGAGGCGUG	chrX:153774925-153775180(+)$1	255	181	221	11.7233
GCGUGGAGGUGGGACAGGGGGACCAAACCACCCUCCUGCU	chr6:31599458-31599730(+)$1	272	186	226	13.9019
GGCAGUAGAUGUAAGCCGGAACCGGCUCACGGCAGUGCCC	chr9:138376659-138376915(+)$1	256	201	241	12.6662
CCAGGAACAGGCUUGGGCACGAGUCCAGCCUUGGCUGGGG	chr2:227661858-227662103(-)$1	245	134	174	11.8829
GGGCCAGAUGGAGAGGCUGCAGAGCCCAUUGGAGAGGCUG	chr19:57325425-57325737(-)$1	312	197	237	13.2210
GAGGAGGCUUCCUCGGGGAGGGCCCCGGGGACACGGCUGA	chr4:982617-982856(-)$1	239	105	145	10.9262
GCAGCCUUCGGUGACUGGGGUGCCAGAGUUGCCAGGGCUG	chr21:34923018-34923282(+)$1	264	204	244	14.7056
GGCAGCACCGCCAGCCGGGGCUCUCCUGGUGGUUGUUGCC	chr14:105715205-105715474(-)$1	269	71	111	11.5540
AGUCCCUUGAGCCGAGGCUGGGUGCCCUCGGCCCUGCAGG	chr6:138754338-138754594(-)$1	256	116	156	13.2492
GCGGGCGUGGAGGUGCAGGUGCUGGAGAAGCAGGAGAGCG	chr10:105362133-105362438(-)$1	305	50	90	13.0828
UGGUGGGCGGCGAGAUCCAGGAGAAGCUGCUGUCGGCCGA	chr8:144940403-144940695(-)$1	292	145	185	12.4496
GCAGGAGCUGGGCUUGGACCUGUCCAAGAAAAGCCCACCC	chr22:21799735-21800003(+)$1	268	174	214	11.3142

#DB
((.(((((((.(((..(((...))).)))))))))).)))	chr11:607176-607427(+)$1	1	80	120	13.4529
((((.(.((((.(((.((....)).))))))).).)))))	chr22:45724171-45724398(+)$1	1	121	161	13.9003
(((.(((.((.(((((((....))))))).)).)))))).	chr19:56127160-56127441(+)$1	1	153	193	13.6590
((((((((...((.((((....)))).))....)))).))	chr5:73931125-73931377(-)$1	1	112	152	11.4275
(((((((((((.(((.((....))...)))))))))..))	chr8:144671086-144671337(-)$1	1	63	103	12.7085
((((((.(((((((((((...)))).))))))).))))))	chr21:34923316-34923567(+)$1	1	132	172	12.9302
(.((((.(((..((.(((....))).)).))))))).)).	chr9:134350650-134350917(+)$1	1	87	127	12.2914
...(((.(((.(((((((.....))))))).).)).))))	chr17:79860493-79860770(-)$1	1	93	133	11.1181
((((...((.(((..((......)).))).))...)))))	chr16:1827054-1827309(+)$1	1	147	187	12.4811
(((((((((.....((((....))))..))))))))).))	chr14:105715317-105715582(-)$1	1	132	172	12.7885
((((((...(((((..((....))..))).))....))))	chr16:89346795-89347072(-)$1	1	49	89	12.9376
.((((....(((((((((...)))....))))))....))	chr9:138378804-138379087(+)$1	1	224	264	11.9404
.(((...((.(.((((((....)))))).).))...))).	chr6:138752171-138752414(-)$1	1	80	120	12.6002
((((((.(((...((((((...))).))).))))))))))	chr19:59074520-59074782(+)$1	1	140	180	14.2890
((((((((((...(((......)))))))))))...))).	chr11:71725465-71725716(-)$1	1	183	223	11.0927
((((((...(((((..((....))..))).))....))))	chr16:89346902-89347153(-)$1	1	130	170	12.9376
(((.((((((((....((....))...))).)))))))))	chr6:31599538-31599804(+)$1	1	106	146	13.8106
.((((((..(((((((((....))))))))).))))))..	chr16:89346251-89346497(-)$1	1	62	102	12.9325
(((...(((((((.((((....)))))))).)))...)))	chr2:227659953-227660188(-)$1	1	184	224	11.8895
((..(((.(((..(.(((....))).)..)))..)))..)	chr14:75265143-75265445(+)$1	1	2	42	14.0894
.((((..(((((((.(((......))).)))))))..)))	chr22:50279969-50280274(+)$1	1	240	280	12.0825
(((.(..((.(((.((.(......).)))))..))..).)	chr19:50099510-50099770(+)$1	1	124	164	11.0798
((((.(.((((.(((.((....)).))))))).).)))))	chr22:45724198-45724429(+)$1	1	94	134	13.9003
.((((...(((...((((....))))..)))..))))..)	chr16:87735789-87736041(-)$1	1	35	75	13.2306
(((.(((.(((((((((....))))..))))).))).)))	chr10:77159500-77159768(-)$1	1	162	202	10.5756
(((.(..(((((((.(((....)))))))))).)))))).	chr19:4048131-4048399(-)$1	1	195	235	15.1620
(.(..(((..((...(((....)))))..)))..).))))	chr14:23450758-23451026(-)$1	1	16	56	12.9242
.(((((..((((((...(....)...))))))..))))).	chr17:37618278-37618527(+)$1	1	78	118	10.7912
((..(((((((..(((((.....)).))).)).)))))))	chr20:31022638-31022921(+)$1	1	40	80	10.9811
.((((...((((...((......))..)))))))).))))	chr16:72992007-72992257(-)$1	1	131	171	10.9918
.((.((((.(((((((((......))))))))))))).))	chr2:97482293-97482571(+)$1	1	194	234	11.4578
(((((.(((((.(.(.(......).).).))).))..)))	chr6:1313031-1313292(+)$1	1	206	246	12.3630
.((((..((((((((((....)))).))).)))..)))).	chr18:30350889-30351153(+)$1	1	132	172	11.5680
((((((..((((((((((...))))))))))..).))...	chr2:227662866-227663182(-)$1	1	136	176	13.9250
(((.(((.(.(((((((((...)))))))))..).))).)	chr2:236579462-236579692(+)$1	1	31	71	13.6691
))).(((((((((((.((....)).))))))))))).(((	chr11:637267-637555(+)$1	1	141	181	13.5595
).))).(((.(.(((.((....)).))).).)))((((..	chr1:2160056-2160328(+)$1	1	78	118	11.8024
)))).(((((.(((.(.(...).).))).)))))(((((.	chr7:1097271-1097520(-)$1	1	114	154	9.9644
(((....(((...(((((....)))))))).)))))).).	chr8:144671768-144671997(-)$1	1	35	75	12.4140
.(((((((.(.(((((((....))))))))))))))).).	chr17:80197768-80198012(+)$1	1	38	78	14.2579
.(((((((((((((((((....))).)))).)))))))))	chr16:31091061-31091340(+)$1	1	152	192	13.0619
.((((...(((((.((((....))))))))))))).))))	chr3:32932361-32932613(+)$1	1	86	126	11.5854
(((.(((((..(((.((((...)))).)))..)))))...	chr5:154135525-154135738(+)$1	1	121	161	11.7164
)(((((((.(((((((((....)))...)))))).)))))	chr16:30750794-30751075(+)$1	1	58	98	13.5427
(((.(((((.(((((((((....))..)))))))))))).	chr21:34923265-34923516(+)$1	1	28	68	11.9261
..(..((((((((..(((......)))....))))).)))	chr16:30793060-30793330(-)$1	1	154	194	12.1887
(.((((((.(.(((((((....)).))))).).)))))).	chrX:153774925-153775180(+)$1	1	181	221	11.7233
(((.((((((((....((....))...))).)))))))))	chr6:31599458-31599730(+)$1	1	186	226	13.9019
((((.(...(((.(((((....))))).)))..).)))))	chr9:138376659-138376915(+)$1	1	201	241	12.6662
((((....(((((.((((....)))))))))...))))))	chr2:227661858-227662103(-)$1	1	134	174	11.8829
.((((...(.((..((((....))))..)).)...)))).	chr19:57325425-57325737(-)$1	1	197	237	13.2210
)..).))))(((((((((....)))))))))((((.((((	chr4:982617-982856(-)$1	1	105	145	10.9262
((((((((.(((((((((....))..))))))))))))))	chr21:34923018-34923282(+)$1	1	204	244	14.7056
((((((((((((((..(((...)))))))))).)))))))	chr14:105715205-105715474(-)$1	1	71	111	11.5540
(((((((.(.((((((((.....).))))))).)...)))	chr6:138754338-138754594(-)$1	1	116	156	13.2492
((...(.((....(.(((...))).)....)).)...)))	chr10:105362133-105362438(-)$1	1	50	90	13.0828
((((.(((((((...((.....))...))))))).)))).	chr8:144940403-144940695(-)$1	1	145	185	12.4496
(..((.(((...((((((....))))))...)))))...)	chr22:21799735-21800003(+)$1	1	174	214	11.3142

#PSSM
d : 0.17	c : 0.13	f : 0.13	[ : 0.10	e : 0.08	g : 0.05	h : 0.05	! : 0.05	: : 0.05	b : 0.03	" : 0.03	i : 0.03	= : 0.01	$ : 0.01	a : 0.01	
d : 0.27	c : 0.18	f : 0.10	g : 0.08	e : 0.06	[ : 0.05	h : 0.05	i : 0.03	= : 0.03	! : 0.03	" : 0.01	b : 0.01	] : 0.01	2 : 0.01	
d : 0.24	c : 0.18	f : 0.12	g : 0.08	h : 0.06	! : 0.05	e : 0.05	" : 0.03	i : 0.03	= : 0.03	a : 0.03	[ : 0.01	b : 0.01	2 : 0.01	
d : 0.18	[ : 0.17	g : 0.10	c : 0.10	f : 0.08	h : 0.06	! : 0.06	i : 0.03	= : 0.03	" : 0.03	b : 0.03	e : 0.01	: : 0.01	# : 0.01	a : 0.01	
d : 0.18	c : 0.13	e : 0.10	g : 0.06	[ : 0.06	" : 0.06	h : 0.06	= : 0.05	i : 0.03	f : 0.03	a : 0.03	! : 0.03	b : 0.03	# : 0.03	: : 0.01	] : 0.01	
c : 0.13	" : 0.12	e : 0.12	g : 0.08	a : 0.08	d : 0.06	h : 0.06	! : 0.06	f : 0.05	# : 0.05	= : 0.05	i : 0.03	[ : 0.03	: : 0.01	
c : 0.17	" : 0.15	[ : 0.12	e : 0.10	! : 0.10	g : 0.06	d : 0.05	f : 0.05	# : 0.05	i : 0.03	h : 0.03	= : 0.03	b : 0.01	
c : 0.15	g : 0.13	" : 0.12	b : 0.10	e : 0.10	d : 0.08	[ : 0.08	! : 0.05	f : 0.03	i : 0.03	# : 0.03	= : 0.03	h : 0.01	
c : 0.17	e : 0.17	g : 0.10	b : 0.10	[ : 0.08	d : 0.06	" : 0.06	= : 0.05	a : 0.05	f : 0.03	! : 0.03	i : 0.01	# : 0.01	h : 0.01	
c : 0.17	[ : 0.13	g : 0.12	e : 0.08	d : 0.06	b : 0.06	f : 0.06	a : 0.05	i : 0.05	= : 0.05	" : 0.03	! : 0.03	$ : 0.01	h : 0.01	# : 0.01	
c : 0.15	g : 0.13	[ : 0.10	" : 0.08	b : 0.08	d : 0.06	f : 0.06	i : 0.06	e : 0.06	= : 0.05	! : 0.03	a : 0.03	$ : 0.01	# : 0.01	
c : 0.18	g : 0.18	[ : 0.10	" : 0.08	e : 0.08	i : 0.06	b : 0.05	! : 0.05	f : 0.05	d : 0.05	= : 0.03	$ : 0.01	# : 0.01	
c : 0.20	g : 0.17	" : 0.12	f : 0.08	e : 0.08	i : 0.06	# : 0.05	! : 0.05	b : 0.03	d : 0.03	= : 0.03	$ : 0.01	a : 0.01	[ : 0.01	
c : 0.20	g : 0.17	[ : 0.10	f : 0.08	i : 0.06	" : 0.06	! : 0.05	d : 0.05	e : 0.05	# : 0.03	a : 0.03	= : 0.03	b : 0.01	$ : 0.01	
d : 0.18	c : 0.12	[ : 0.12	! : 0.10	g : 0.10	f : 0.06	i : 0.06	" : 0.06	e : 0.05	# : 0.03	= : 0.03	b : 0.01	a : 0.01	
c : 0.22	d : 0.18	[ : 0.10	g : 0.10	! : 0.06	b : 0.06	i : 0.06	e : 0.05	f : 0.03	# : 0.03	" : 0.01	= : 0.01	a : 0.01	
b : 0.25	c : 0.22	d : 0.18	g : 0.08	i : 0.06	f : 0.03	[ : 0.03	e : 0.03	o : 0.01	" : 0.01	a : 0.01	= : 0.01	
c : 0.22	b : 0.22	d : 0.15	o : 0.06	i : 0.06	a : 0.06	g : 0.05	f : 0.03	m : 0.03	e : 0.03	= : 0.01	n : 0.01	
m : 0.60	o : 0.13	l : 0.08	n : 0.06	c : 0.05	i : 0.01	d : 0.01	b : 0.01	
m : 0.62	l : 0.17	o : 0.13	n : 0.06	
m : 0.62	l : 0.17	o : 0.13	n : 0.06	
m : 0.58	o : 0.13	l : 0.08	n : 0.06	d : 0.05	c : 0.03	= : 0.01	a : 0.01	
c : 0.20	b : 0.20	d : 0.18	o : 0.12	n : 0.05	i : 0.05	g : 0.03	f : 0.03	e : 0.03	a : 0.01	= : 0.01	] : 0.01	m : 0.01	
b : 0.27	c : 0.20	d : 0.18	o : 0.06	g : 0.05	i : 0.05	a : 0.05	f : 0.03	e : 0.03	3 : 0.01	= : 0.01	
c : 0.20	d : 0.18	] : 0.15	3 : 0.08	b : 0.06	i : 0.06	g : 0.05	2 : 0.05	f : 0.03	e : 0.03	4 : 0.01	a : 0.01	= : 0.01	
] : 0.17	d : 0.13	c : 0.10	g : 0.10	3 : 0.10	2 : 0.10	i : 0.06	e : 0.05	f : 0.03	a : 0.03	= : 0.03	4 : 0.01	h : 0.01	b : 0.01	
c : 0.22	g : 0.13	2 : 0.10	3 : 0.08	e : 0.08	i : 0.06	] : 0.05	b : 0.05	f : 0.05	4 : 0.03	d : 0.03	= : 0.03	h : 0.01	a : 0.01	
c : 0.27	g : 0.17	2 : 0.08	i : 0.06	e : 0.06	b : 0.05	4 : 0.05	f : 0.05	d : 0.05	] : 0.03	= : 0.03	h : 0.01	a : 0.01	3 : 0.01	
c : 0.25	g : 0.18	d : 0.08	] : 0.08	i : 0.08	e : 0.06	f : 0.05	b : 0.03	2 : 0.03	= : 0.03	4 : 0.03	h : 0.01	3 : 0.01	
c : 0.20	g : 0.17	] : 0.12	d : 0.08	i : 0.08	e : 0.08	4 : 0.05	f : 0.05	a : 0.05	= : 0.03	h : 0.01	b : 0.01	3 : 0.01	
g : 0.17	] : 0.17	c : 0.15	b : 0.10	i : 0.08	f : 0.06	e : 0.06	d : 0.05	4 : 0.03	= : 0.03	h : 0.01	2 : 0.01	3 : 0.01	
g : 0.17	c : 0.15	b : 0.12	2 : 0.10	d : 0.08	f : 0.08	e : 0.08	a : 0.05	i : 0.03	= : 0.03	4 : 0.01	h : 0.01	] : 0.01	3 : 0.01	
] : 0.20	2 : 0.13	g : 0.12	f : 0.08	c : 0.08	e : 0.08	d : 0.06	4 : 0.05	3 : 0.05	i : 0.03	= : 0.03	b : 0.01	h : 0.01	
a : 0.13	d : 0.12	f : 0.10	e : 0.10	g : 0.08	c : 0.08	3 : 0.08	2 : 0.06	b : 0.05	= : 0.05	i : 0.03	4 : 0.03	] : 0.01	h : 0.01	
e : 0.15	d : 0.13	] : 0.12	3 : 0.12	f : 0.08	g : 0.06	b : 0.06	c : 0.05	4 : 0.05	= : 0.05	i : 0.03	a : 0.01	2 : 0.01	h : 0.01	
d : 0.15	e : 0.15	g : 0.10	f : 0.10	3 : 0.08	c : 0.06	] : 0.06	4 : 0.05	= : 0.05	2 : 0.05	i : 0.03	b : 0.03	[ : 0.01	h : 0.01	
d : 0.15	c : 0.13	f : 0.10	e : 0.10	g : 0.08	] : 0.06	2 : 0.06	h : 0.06	3 : 0.06	i : 0.03	= : 0.03	4 : 0.01	a : 0.01	b : 0.01	: : 0.01	
c : 0.17	d : 0.15	f : 0.12	e : 0.10	g : 0.08	] : 0.08	h : 0.06	2 : 0.05	3 : 0.05	= : 0.03	b : 0.01	4 : 0.01	a : 0.01	i : 0.01	
c : 0.18	d : 0.17	f : 0.10	e : 0.10	g : 0.08	h : 0.06	2 : 0.05	3 : 0.05	b : 0.03	= : 0.03	] : 0.03	a : 0.03	# : 0.01	i : 0.01	
d : 0.13	] : 0.12	c : 0.10	g : 0.08	f : 0.08	2 : 0.06	e : 0.06	h : 0.06	3 : 0.06	= : 0.05	b : 0.03	G : 0.01	: : 0.01	# : 0.01	[ : 0.01	F : 0.01	i : 0.01	

#score	726.6781038359288
#seq	58
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_transcript_m3_run1.txt

#BEAR
hhhhhhhhoooooohhhhhhhh4	chr5:12714366-12714624(+)$1	258	63	86	11.0143
"""eeeeeooooooeeeeebbgg	chr1:167734452-167734739(+)$1	287	29	52	11.1020
b!!eeeeeooooooeeeee22bb	chr8:91268894-91269120(+)$1	226	70	93	10.9060
ccc[ddddoooooodddd22ccc	chr7:128400300-128400609(+)$1	309	185	208	10.7841
iiiiiiiiinnnnniiiiiiiii	chr15:23813447-23813735(+)$1	288	15	38	10.2442
ccffffffooooooffffff333	chr6:160156716-160157018(+)$1	302	129	152	11.5728
ffff[cccoooooocccffffff	chr22:48188738-48189057(+)$1	319	217	240	11.6956
==========mmmm=========	chr6:147656572-147656834(+)$1	262	180	203	10.1286
[gggggggooooooggggggg]b	chr4:79810328-79810586(+)$1	258	185	208	13.6118
eeeee[bboooooobbeeeee33	chr21:39387760-39388056(-)$1	296	164	187	10.4324
eee[ddddoooooodddd]eeee	chr1:52243956-52244217(+)$1	261	17	40	10.3205
==========mmmm=========	chr16:24015057-24015378(+)$1	321	240	263	10.1286
fiiiiiiiiimmmmiiiiiiiii	chr12:102111273-102111551(+)$1	278	225	248	9.5789
ccc[ddddoooooodddd333cc	chr21:23642008-23642251(+)$1	243	37	60	11.2890
ccceeeeeooooooeeeee]ccc	chr8:91263856-91264104(+)$1	248	8	31	11.5897
:==========lll=========	chr7:120795083-120795336(+)$1	253	229	252	9.7525
egggggggooooooggggggg>>	chr6:147659377-147659624(+)$1	247	148	171	13.1105
==========lll==========	chr4:23011749-23012016(+)$1	267	228	251	10.7589
ffffff[aooooooa]ffffff3	chr15:58327802-58328078(-)$1	276	247	270	11.2501
[gggggggooooooggggggg]c	chr7:129738445-129738742(+)$1	297	32	55	13.8258
gggggcccooooooccc]ggggg	chr15:89793919-89794271(+)$1	352	326	349	13.4556
hhhhhhhhoooooohhhhhhhh4	chr5:53567567-53567839(-)$1	272	134	157	11.0143
#gggggggooooooggggggg66	chr3:6552557-6552832(+)$1	275	181	204	12.8032
ccceeeeeooooooeeeee]ccc	chr8:91263784-91264035(+)$1	251	80	103	11.5897
eccc[cccooooooccc]ccc44	chr8:91295443-91295694(+)$1	251	24	47	12.4373
========oooooo=========	chr6:147674198-147674445(+)$1	247	12	35	14.3032
hhhhhh[aooooooa]hhhhhhh	chr11:96070322-96070604(-)$1	282	10	33	10.9125
:gggggggooooooggggggg:f	chrX:13356805-13357057(+)$1	252	150	173	11.7159
a####cccooooooccc4444a]	chr7:107166027-107166298(-)$1	271	54	77	11.7124
[iiiiiiiiimmmmiiiiiiiii	chr8:130522868-130523140(-)$1	272	23	46	9.8152
:gggggggooooooggggggg:g	chr7:120792972-120793217(+)$1	245	38	61	11.8582
!gggggggooooooggggggg33	chr10:74226499-74226804(-)$1	305	210	233	13.9842
b!!eeeeeooooooeeeee22bb	chr8:91268874-91269094(+)$1	220	90	113	10.9060
gg[gggggggmmmmggggggg]g	chr2:131114907-131115204(+)$1	297	182	205	8.9076
Dgggggggooooooggggggg::	chr7:16307383-16307665(+)$1	282	170	193	10.6732
"""eeeeeooooooeeeee22ff	chrX:110931139-110931398(+)$1	259	140	163	11.1630
a[ffffffooooooffffff]a:	chr22:50043092-50043375(-)$1	283	166	189	10.5781
hhhhhhhhoooooohhhhhhhh2	chr7:12413133-12413384(-)$1	251	198	221	10.8298
d####cccooooooccc]dddd]	chr12:62656073-62656376(+)$1	303	47	70	11.3721
!!ffffffooooooffffffddd	chr16:16217428-16217718(+)$1	290	220	243	10.9159
iiiiiiiiinnnnniiiiiiiii	chr3:41243063-41243354(+)$1	291	21	44	10.2442
c[ffffffooooooffffffccc	chr12:74536448-74536714(-)$1	266	207	230	11.4306
gggggggccclllccc]gggggg	chr22:19428900-19429140(-)$1	240	124	147	8.9835
:gggggggooooooggggggg::	chr1:21102001-21102260(-)$1	259	50	73	10.8990
gggg[cccooooooccc]ggggg	chr1:155449489-155449750(-)$1	261	73	96	13.5037
iiiiiiiiooooooiiiiiiiii	chr6:147673351-147673616(+)$1	265	69	92	14.2345
eeee[cccooooooccc]eeeee	chr8:93835893-93836143(-)$1	250	194	217	11.6857
========oooooo=========	chr17:68063974-68064261(-)$1	287	171	194	14.3032
iiiiiiiiinnnnniiiiiiiii	chr7:120893755-120894019(+)$1	264	65	88	10.2442
e[bb[cccooooooccc]bb]ee	chr3:138401399-138401712(-)$1	313	150	173	11.3222
ffff[cccooooooccc]fffff	chr1:94368660-94368944(-)$1	284	166	189	11.9148
Gddddcccooooooccc]ddddc	chr1:224613148-224613466(-)$1	318	158	181	10.3737
gggggg[aooooooa]ggggggg	chr22:48121225-48121475(+)$1	250	37	60	13.3245
ffffddddoooooodddd]ffff	chrM:8382-8602(+)$1	220	146	169	10.3748
iiiiiiiiooooooiiiiiiiii	chr11:65266860-65267066(+)$1	206	147	170	14.2345
""a[ddddoooooodddda333h	chr5:6728991-6729311(+)$1	320	38	61	11.1491
========oooooo=========	chr19:21326513-21326817(+)$1	304	52	75	14.3032

#otherMatches

#Seq PSSM
UUAGUGUUUCACUUAACAUUGAU	chr5:12714366-12714624(+)$1	258	63	86	11.0143
gagggaauaugagaauucuaccu	chr1:167734452-167734739(+)$1	287	29	52	11.1020
uaauauuaaaaagauaauaaagg	chr8:91268894-91269120(+)$1	226	70	93	10.9060
uaguuauuuaaccuaauauucua	chr7:128400300-128400609(+)$1	309	185	208	10.7841
GCUUUGUAUUUGAUAUACAAAGU	chr15:23813447-23813735(+)$1	288	15	38	10.2442
GUGGUAGGUACUACCUUACUUUA	chr6:160156716-160157018(+)$1	302	129	152	11.5728
AUGCCGUCAUCAAAGACGCAUCA	chr22:48188738-48189057(+)$1	319	217	240	11.6956
UAUAUAUUUAAAUCUAAGUAUAU	chr6:147656572-147656834(+)$1	262	180	203	10.1286
AUAGGAGAAAUGCGUCUCCUGAG	chr4:79810328-79810586(+)$1	258	185	208	13.6118
uaguuaugcaguuccaaacuaaa	chr21:39387760-39388056(-)$1	296	164	187	10.4324
guagaguuaaucccaacuauauc	chr1:52243956-52244217(+)$1	261	17	40	10.3205
auaaaauaGUGAAUGCUAUUUUA	chr16:24015057-24015378(+)$1	321	240	263	10.1286
uacaaaacuaaacauaguuuugu	chr12:102111273-102111551(+)$1	278	225	248	9.5789
aaguaccaugauuuugguuuccu	chr21:23642008-23642251(+)$1	243	37	60	11.2890
AUAAUUUUAAAUCAGAAAUAUAU	chr8:91263856-91264104(+)$1	248	8	31	11.5897
uaauauuguuaaaaugacaguau	chr7:120795083-120795336(+)$1	253	229	252	9.7525
ugagguauugagaugugccuuua	chr6:147659377-147659624(+)$1	247	148	171	13.1105
ugcucuaagcagagcuuagagua	chr4:23011749-23012016(+)$1	267	228	251	10.7589
uauuuugaacuaaaugaaaauac	chr15:58327802-58328078(-)$1	276	247	270	11.2501
cuUGUGCUGAAUAAAGCAUAAAU	chr7:129738445-129738742(+)$1	297	32	55	13.8258
aucaaauuaaucaaaaucuuggu	chr15:89793919-89794271(+)$1	352	326	349	13.4556
UAGGCAGAGGAGAAUCUGCUUGA	chr5:53567567-53567839(-)$1	272	134	157	11.0143
AAUAUCCAUAUUUUUGGAUAUCA	chr3:6552557-6552832(+)$1	275	181	204	12.8032
AUAAUUUUAAAUCAGAAAUAUAU	chr8:91263784-91264035(+)$1	251	80	103	11.5897
UUUUGUGAAUACAAUCAGAGAAU	chr8:91295443-91295694(+)$1	251	24	47	12.4373
uugaggcugcagugagccuuggu	chr6:147674198-147674445(+)$1	247	12	35	14.3032
CAAUUGUCUAAAAUGUUAAUUGU	chr11:96070322-96070604(-)$1	282	10	33	10.9125
auagaaauuuaaauguuuuuaac	chrX:13356805-13357057(+)$1	252	150	173	11.7159
ccagccugggugaacagaacaga	chr7:107166027-107166298(-)$1	271	54	77	11.7124
ugacuuuauuuggaaauaggguc	chr8:130522868-130523140(-)$1	272	23	46	9.8152
AUGGUGGAUUUCAUUUUAUUAGC	chr7:120792972-120793217(+)$1	245	38	61	11.8582
AAGGUAGAAUUAAAUCUGUCUGA	chr10:74226499-74226804(-)$1	305	210	233	13.9842
uaauauuaaaaagauaauaaagg	chr8:91268874-91269094(+)$1	220	90	113	10.9060
AUAAAAUGACCAAAGUUAUUUGA	chr2:131114907-131115204(+)$1	297	182	205	8.9076
cauauacaggaagauguauauag	chr7:16307383-16307665(+)$1	282	170	193	10.6732
AUGUGauuaaaucaaauuaaaua	chrX:110931139-110931398(+)$1	259	140	163	11.1630
UGUCUCCCAUGAUGGGGAGAGAA	chr22:50043092-50043375(-)$1	283	166	189	10.5781
gagugguuacgaaaagccauuug	chr7:12413133-12413384(-)$1	251	198	221	10.8298
GUAAUGACAAAUAAGUCCCCGCU	chr12:62656073-62656376(+)$1	303	47	70	11.3721
acuugagcccagcaguucgagac	chr16:16217428-16217718(+)$1	290	220	243	10.9159
CUGUGCUAGAAAGCUUAGUAUAG	chr3:41243063-41243354(+)$1	291	21	44	10.2442
UUAUAUAACAUGCUUUAUGUAAG	chr12:74536448-74536714(-)$1	266	207	230	11.4306
AUAAUAAGUAUUUUACAUUAUUA	chr22:19428900-19429140(-)$1	240	124	147	8.9835
auuuguguauuuaaacauagaaa	chr1:21102001-21102260(-)$1	259	50	73	10.8990
AGAAACUGUUGAAUCAGAUUCUU	chr1:155449489-155449750(-)$1	261	73	96	13.5037
AAUCAAAUACUUAAAUUUGAUUA	chr6:147673351-147673616(+)$1	265	69	92	14.2345
UAUUCUUAGAUUAUUAAUAAUAA	chr8:93835893-93836143(-)$1	250	194	217	11.6857
UUAGAGAUCAUUACAUUUCUAAU	chr17:68063974-68064261(-)$1	287	171	194	14.3032
cuauuuuauaucagauaaaauag	chr7:120893755-120894019(+)$1	264	65	88	10.2442
GUCACUUGACCAUACAAAUGUCA	chr3:138401399-138401712(-)$1	313	150	173	11.3222
uaguaucuacccaaagaagcuaa	chr1:94368660-94368944(-)$1	284	166	189	11.9148
CUCUUGUAAAAAACUGCUAAGAU	chr1:224613148-224613466(-)$1	318	158	181	10.3737
uuuguuuccuauuagcagcaaac	chr22:48121225-48121475(+)$1	250	37	60	13.3245
UGAACGAAAAUCUGUUCGCUUCA	chrM:8382-8602(+)$1	220	146	169	10.3748
UGACGCAGGGAGAAUUGCGUCAU	chr11:65266860-65267066(+)$1	206	147	170	14.2345
UUGUCACUUUUAAUGGUGCUUUA	chr5:6728991-6729311(+)$1	320	38	61	11.1491
CCCCCUGGAUUGUCUUAGGGGGC	chr19:21326513-21326817(+)$1	304	52	75	14.3032

#DB
((((((((......)))))))).	chr5:12714366-12714624(+)$1	1	63	86	11.0143
...(((((......)))))))))	chr1:167734452-167734739(+)$1	1	29	52	11.1020
(..(((((......)))))..))	chr8:91268894-91269120(+)$1	1	70	93	10.9060
(((.((((......))))..)))	chr7:128400300-128400609(+)$1	1	185	208	10.7841
(((((((((.....)))))))))	chr15:23813447-23813735(+)$1	1	15	38	10.2442
((((((((......))))))...	chr6:160156716-160157018(+)$1	1	129	152	11.5728
((((.(((......)))))))))	chr22:48188738-48189057(+)$1	1	217	240	11.6956
((((((((((....)))))))))	chr6:147656572-147656834(+)$1	1	180	203	10.1286
.(((((((......))))))).)	chr4:79810328-79810586(+)$1	1	185	208	13.6118
(((((.((......)))))))..	chr21:39387760-39388056(-)$1	1	164	187	10.4324
(((.((((......)))).))))	chr1:52243956-52244217(+)$1	1	17	40	10.3205
((((((((((....)))))))))	chr16:24015057-24015378(+)$1	1	240	263	10.1286
)(((((((((....)))))))))	chr12:102111273-102111551(+)$1	1	225	248	9.5789
(((.((((......))))...))	chr21:23642008-23642251(+)$1	1	37	60	11.2890
((((((((......))))).)))	chr8:91263856-91264104(+)$1	1	8	31	11.5897
.((((((((((...)))))))))	chr7:120795083-120795336(+)$1	1	229	252	9.7525
((((((((......)))))))..	chr6:147659377-147659624(+)$1	1	148	171	13.1105
((((((((((...))))))))))	chr4:23011749-23012016(+)$1	1	228	251	10.7589
((((((.(......).)))))).	chr15:58327802-58328078(-)$1	1	247	270	11.2501
.(((((((......))))))).)	chr7:129738445-129738742(+)$1	1	32	55	13.8258
((((((((......))).)))))	chr15:89793919-89794271(+)$1	1	326	349	13.4556
((((((((......)))))))).	chr5:53567567-53567839(-)$1	1	134	157	11.0143
.(((((((......)))))))..	chr3:6552557-6552832(+)$1	1	181	204	12.8032
((((((((......))))).)))	chr8:91263784-91264035(+)$1	1	80	103	11.5897
((((.(((......))).)))..	chr8:91295443-91295694(+)$1	1	24	47	12.4373
((((((((......)))))))))	chr6:147674198-147674445(+)$1	1	12	35	14.3032
((((((.(......).)))))))	chr11:96070322-96070604(-)$1	1	10	33	10.9125
.(((((((......))))))).(	chrX:13356805-13357057(+)$1	1	150	173	11.7159
(....(((......)))....).	chr7:107166027-107166298(-)$1	1	54	77	11.7124
.(((((((((....)))))))))	chr8:130522868-130523140(-)$1	1	23	46	9.8152
.(((((((......))))))).(	chr7:120792972-120793217(+)$1	1	38	61	11.8582
.(((((((......)))))))..	chr10:74226499-74226804(-)$1	1	210	233	13.9842
(..(((((......)))))..))	chr8:91268874-91269094(+)$1	1	90	113	10.9060
((.(((((((....))))))).)	chr2:131114907-131115204(+)$1	1	182	205	8.9076
((((((((......)))))))..	chr7:16307383-16307665(+)$1	1	170	193	10.6732
...(((((......)))))..))	chrX:110931139-110931398(+)$1	1	140	163	11.1630
(.((((((......)))))).).	chr22:50043092-50043375(-)$1	1	166	189	10.5781
((((((((......)))))))).	chr7:12413133-12413384(-)$1	1	198	221	10.8298
(....(((......))).)))).	chr12:62656073-62656376(+)$1	1	47	70	11.3721
..((((((......)))))))))	chr16:16217428-16217718(+)$1	1	220	243	10.9159
(((((((((.....)))))))))	chr3:41243063-41243354(+)$1	1	21	44	10.2442
(.((((((......)))))))))	chr12:74536448-74536714(-)$1	1	207	230	11.4306
((((((((((...))).))))))	chr22:19428900-19429140(-)$1	1	124	147	8.9835
.(((((((......)))))))..	chr1:21102001-21102260(-)$1	1	50	73	10.8990
((((.(((......))).)))))	chr1:155449489-155449750(-)$1	1	73	96	13.5037
((((((((......)))))))))	chr6:147673351-147673616(+)$1	1	69	92	14.2345
((((.(((......))).)))))	chr8:93835893-93836143(-)$1	1	194	217	11.6857
((((((((......)))))))))	chr17:68063974-68064261(-)$1	1	171	194	14.3032
(((((((((.....)))))))))	chr7:120893755-120894019(+)$1	1	65	88	10.2442
(.((.(((......))).)).))	chr3:138401399-138401712(-)$1	1	150	173	11.3222
((((.(((......))).)))))	chr1:94368660-94368944(-)$1	1	166	189	11.9148
)(((((((......))).))))(	chr1:224613148-224613466(-)$1	1	158	181	10.3737
((((((.(......).)))))))	chr22:48121225-48121475(+)$1	1	37	60	13.3245
((((((((......)))).))))	chrM:8382-8602(+)$1	1	146	169	10.3748
((((((((......)))))))))	chr11:65266860-65267066(+)$1	1	147	170	14.2345
..(.((((......)))))...)	chr5:6728991-6729311(+)$1	1	38	61	11.1491
((((((((......)))))))))	chr19:21326513-21326817(+)$1	1	52	75	14.3032

#PSSM
c : 0.10	= : 0.10	e : 0.10	i : 0.08	f : 0.08	g : 0.08	h : 0.07	: : 0.07	" : 0.05	[ : 0.05	b : 0.03	a : 0.03	! : 0.03	# : 0.01	D : 0.01	d : 0.01	G : 0.01	
g : 0.24	i : 0.12	= : 0.12	c : 0.10	h : 0.07	f : 0.07	" : 0.05	! : 0.05	e : 0.05	[ : 0.05	# : 0.03	d : 0.01	
g : 0.22	f : 0.14	i : 0.12	= : 0.12	c : 0.08	h : 0.07	e : 0.05	" : 0.03	! : 0.03	# : 0.03	[ : 0.01	b : 0.01	d : 0.01	a : 0.01	
g : 0.24	e : 0.14	f : 0.14	i : 0.12	= : 0.12	h : 0.07	[ : 0.07	# : 0.03	c : 0.01	b : 0.01	d : 0.01	
g : 0.22	e : 0.12	i : 0.12	= : 0.12	d : 0.10	[ : 0.10	f : 0.08	h : 0.07	# : 0.03	
g : 0.21	c : 0.17	i : 0.12	= : 0.12	e : 0.10	d : 0.08	f : 0.08	h : 0.07	[ : 0.01	
g : 0.19	c : 0.17	i : 0.12	= : 0.12	e : 0.10	d : 0.08	f : 0.07	h : 0.05	[ : 0.05	b : 0.01	
c : 0.19	g : 0.17	i : 0.12	= : 0.12	e : 0.10	d : 0.08	f : 0.07	h : 0.05	a : 0.05	b : 0.01	
o : 0.80	i : 0.08	= : 0.07	g : 0.01	c : 0.01	
o : 0.80	= : 0.07	n : 0.05	i : 0.03	g : 0.01	c : 0.01	
o : 0.80	m : 0.08	n : 0.05	l : 0.03	= : 0.01	
o : 0.80	m : 0.08	n : 0.05	l : 0.05	
o : 0.80	m : 0.08	n : 0.05	l : 0.05	
o : 0.80	m : 0.08	n : 0.05	l : 0.01	= : 0.01	c : 0.01	
c : 0.19	g : 0.17	i : 0.12	= : 0.12	e : 0.10	d : 0.08	f : 0.07	h : 0.05	a : 0.05	b : 0.01	
c : 0.19	g : 0.17	i : 0.12	= : 0.12	e : 0.10	d : 0.08	f : 0.07	h : 0.05	] : 0.05	b : 0.01	
g : 0.19	c : 0.17	e : 0.12	i : 0.12	= : 0.12	d : 0.08	f : 0.08	h : 0.07	] : 0.01	
g : 0.21	] : 0.14	e : 0.12	i : 0.12	= : 0.12	f : 0.10	d : 0.08	h : 0.07	4 : 0.01	
g : 0.24	e : 0.14	i : 0.12	f : 0.12	= : 0.12	h : 0.07	] : 0.03	d : 0.03	2 : 0.01	3 : 0.01	c : 0.01	4 : 0.01	b : 0.01	a : 0.01	
g : 0.24	f : 0.14	i : 0.12	= : 0.12	h : 0.07	2 : 0.07	e : 0.05	b : 0.03	3 : 0.03	] : 0.03	d : 0.03	c : 0.01	4 : 0.01	
g : 0.24	i : 0.12	= : 0.12	c : 0.08	h : 0.07	f : 0.07	2 : 0.05	3 : 0.05	e : 0.05	d : 0.05	] : 0.03	b : 0.01	4 : 0.01	
i : 0.12	= : 0.12	g : 0.08	c : 0.08	f : 0.08	h : 0.07	3 : 0.07	: : 0.07	] : 0.05	e : 0.05	d : 0.05	b : 0.03	a : 0.03	> : 0.01	6 : 0.01	4 : 0.01	
g : 0.12	c : 0.12	i : 0.12	= : 0.12	f : 0.08	3 : 0.07	4 : 0.05	b : 0.05	e : 0.05	: : 0.05	h : 0.03	] : 0.03	> : 0.01	6 : 0.01	2 : 0.01	d : 0.01	

#score	656.5719204092388
#seq	57
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_transcript_m2_run2.txt

#BEAR
dagggggggbb[eeeeemmmmeeeeebb333gggggg	chr1:19453003-19453249(-)$1	246	120	157	11.8710
""bbccc[ccc[a[ccclllccca]cccccc]bb]cc	chr17:57744057-57744292(+)$1	235	167	204	12.4964
dd!!eeeee####ddddmmmmddddeeeee22dddd3	chrX:153579868-153580121(-)$1	253	7	44	12.3710
!!dddd####ccccccnnnnnccc]ccc4444dddd]	chr17:65850471-65850865(+)$1	394	264	301	11.5373
Hccc[eeeee####cccmmmmccc4444eeeee22cc	chr6:31748730-31748992(-)$1	262	128	165	14.6634
ddd####ffffff[cccmmmmccc22ffffff4444d	chr1:52269463-52269720(-)$1	257	153	190	12.5981
!ggggggg####eeeeeooooooeeeee333gggggg	chr2:183826813-183827075(-)$1	262	147	184	12.6571
::ccc[ccc$$$$$cccmmmmccc333cccccc:bb!	chr3:25668162-25668412(-)$1	250	110	147	12.1953
::ggggggg[ccc[cccmmmmccc]ccc22ggggggg	chr3:184041639-184041865(+)$1	226	134	171	12.9649
===[a[dddd!!bbcccmmmmccc]bbdddda]====	chrX:153219790-153220074(-)$1	284	11	48	12.9567
:bb[ddddccc"""cccmmmmccc333ccc4444ddd	chr1:39900002-39900385(+)$1	383	164	201	14.8267
!eeeee"""dddd[cccmmmmccc333dddd]eeeee	chr11:62296659-62296917(-)$1	258	185	222	14.1240
eeeee"""ccc!!ddddmmmmdddd]ccc22eeeee]	chrX:153587318-153587574(-)$1	256	120	157	13.5278
"""dddd[ggggggg[ammmmaggggggg]ddddeee	chr17:57754215-57754432(+)$1	217	23	60	11.5011
fffff[ccc$$$$$bboooooobb4444ccc333fff	chr1:19440391-19440647(-)$1	256	28	65	12.5704
cc####eeeee!!ddddmmmmdddd22eeeeeccccc	chr1:19422929-19423222(-)$1	293	197	234	12.4379
eeeee[dddd####cccoooooocccdddd]eeeee4	chr11:62298729-62298975(-)$1	246	30	67	12.3912
g[eeeee[eeeee[cccmmmmccceeeee22eeeee]	chr17:26960649-26960869(-)$1	220	49	86	12.5775
ddd[bb[ccc[a!!cccmmmmccc22a22cccbb]dd	chr17:45751903-45752142(+)$1	239	148	185	13.9358
[bb"""ggggggg!!bbmmmmbb]ggggggg]bbccc	chrX:153580925-153581135(-)$1	210	161	198	11.9397
!!ggggggg####eeeeeooooooeeeee333ggggg	chr2:183826875-183827106(-)$1	231	177	214	12.0627
dddeeeee[bb"""cccmmmmccc]bbeeeee22ddd	chr9:133750209-133750461(+)$1	252	113	150	12.8125
ggg####eeeee!!cccmmmmccc22eeeeegggggg	chr3:184023462-184023753(+)$1	291	190	227	14.0681
[ffffff"""ccc[cccmmmmccc22ccc333fffff	chr10:120840125-120840381(-)$1	256	134	171	15.0997
dbb[ffffff"""ddddmmmmdddd22ffffff333b	chr3:127323719-127324022(+)$1	303	44	81	12.8249
ffffff[bb$$$$$cccooooooccc333bb]fffff	chr2:96953519-96953749(-)$1	230	88	125	12.0544
e"""dddd####eeeeemmmmeeeeedddd]eeeeec	chr1:154573537-154573862(-)$1	325	85	122	11.5938
:iiiiiiiii####cccmmmmccc22iiiiiiiii::	chr3:9512269-9512566(+)$1	297	2	39	13.6780
cdddd[ggggggg[bboooooobb22ggggggg]ddd	chr3:184040918-184041129(+)$1	211	70	107	10.9308
e[a[bb"""dddd[cccmmmmccc]dddd>>>>>>>>	chr2:55528911-55529217(-)$1	306	233	270	11.4338
c[eeeeedddd"""ddddllldddd]dddd333eeee	chr17:78321477-78321742(+)$1	265	53	90	11.4861
""ggggggga"""bb[annnnna]bb333a]gggggg	chr11:62292780-62293031(-)$1	251	12	49	12.5788
ffffff[ccc####cccnnnnnccc4444ccc333ff	chr10:120796592-120796854(-)$1	262	194	231	14.0640
hhh!!a!!iiiiiiiiimmmmiiiiiiiii]a22hhh	chr17:35549051-35549346(-)$1	295	128	165	11.9658
iiiiiiiii####cccnnnnnccc4444iiiiiiiii	chr2:114697493-114697753(+)$1	260	53	90	14.3176
eeeee####ccc!!cccmmmmccc]ccc333eeeeef	chr17:38560967-38561192(-)$1	225	110	147	15.2703
ddd####iiiiiiiiiooooooiiiiiiiii4444dd	chr12:406158-406467(-)$1	309	133	170	11.5106
d"""a"""ccc!!ddddmmmmdddd22ccc22a22dd	chr12:6706987-6707237(-)$1	250	84	121	13.7749
"ffffff[ccc"""cccmmmmccc]ccc]ffffffa]	chr2:96970429-96970667(-)$1	238	131	168	15.3229
=====[ggggggg!!ccclllccc333ggggggg]==	chr8:48842314-48842518(-)$1	204	150	187	14.4242
cc:ggggggg[a!!ddddllldddd22a]ggggggg:	chr8:48800131-48800360(-)$1	229	155	192	10.9980
#ccc[bb"""bb"""bbmmmmbb333bb22bb]ccc4	chr2:152320927-152321225(+)$1	298	110	147	12.0604
"""ggggggg"""bb[annnnna]bb]ggggggg444	chr1:19505532-19505760(-)$1	228	16	53	11.7981
fff[bb"""ccc[cccnnnnnccc4444ccc333bb]	chr21:34924800-34925112(+)$1	312	172	209	12.4410
bb[dddd"""ccc[ccclllcccccc]dddd]bb333	chr3:193333361-193333636(+)$1	275	148	185	11.2105
cc[eeeeeccc####bbmmmmbb333ccc]eeeeecc	chr6:31599528-31599800(+)$1	272	117	154	14.0123
"""ffffff####cccooooooccc333ffffff22c	chr17:57759534-57759803(+)$1	269	180	217	13.7165
eee[ffffffgggggggmmmmggggggg4444fffff	chr8:48701385-48701632(-)$1	247	173	210	11.7615
d[eeeeeccc!!eeeeemmmmeeeee4444ccc]eee	chr5:154181701-154181949(+)$1	248	44	81	12.5654
!ffffff####ffffffmmmmffffff333ffffff2	chr1:202710441-202710803(-)$1	362	163	200	11.5534
:gggggggccc####bbmmmmbb22ccc]ggggggg:	chr3:184049690-184049945(+)$1	255	66	103	12.2941
$eeeee[ccc[bb!!bbmmmmbb]bb]ccc]eeeee4	chr3:184046620-184046874(+)$1	254	21	58	11.6799
ggggggg[bb"""ddddmmmmdddd4444bbgggggg	chrX:153580650-153580909(-)$1	259	46	83	14.0274
ffffff[ccc"""ddddmmmmdddd22cccffffff3	chr17:57746095-57746349(+)$1	254	55	92	13.9059
"bb####gggggggcccmmmmccc4444ggggggg44	chr9:35712800-35713042(-)$1	242	56	93	15.0129
ccc[ggggggg[eeeeemmmmeeeee22ggggggg]c	chr2:54154436-54154716(-)$1	280	21	58	12.4071
ffffccccccccc[cccnnnnnccc]ccc]ccc]ccc	chr17:1584782-1585068(-)$1	286	60	97	11.6625
"=========="""cccmmmmccc4444=========	chr1:19433089-19433314(-)$1	225	136	173	17.6008

#otherMatches

#Seq PSSM
UGCCACAGCAGCAGCUCUACUGAGCUCUGGGGCUGUG	chr1:19453003-19453249(-)$1	246	120	157	11.8710
CUGCCAACAUCCGUCAGAAUCUGCAGAUUUGUGUUCA	chr17:57744057-57744292(+)$1	235	167	204	12.4964
UGGGAGGCCCAAAGGCUGAUGAGCCGGUCUUACACUC	chrX:153579868-153580121(-)$1	253	7	44	12.3710
GAAGUCUGUGUAGCACACAAGGUGCCUGGUGUGACUG	chr17:65850471-65850865(+)$1	394	264	301	11.5373
CGGAAGAUGAGCAAGUCUCUAGGCAAUGUCAUCGAUC	chr6:31748730-31748992(-)$1	262	128	165	14.6634
UGUGGCACAGCUGGAGUAUAAACUGGUAGCUGGAGAA	chr1:52269463-52269720(-)$1	257	153	190	12.5981
AUCACUGAUAUUUGCACAGAACAGUGUACCCUUAGUG	chr2:183826813-183827075(-)$1	262	147	184	12.6571
GGAAGACCGGAGACAGCGUAGGCUACAUGGCUUACCA	chr3:25668162-25668412(-)$1	250	110	147	12.1953
CCAGUGGGUUCUAAAUCUAAUGGUCUGGUUGCCCAUU	chr3:184041639-184041865(+)$1	226	134	171	12.9649
GGUGGCUCGCCCAGCACCACAGUGACUGUGACAGCCC	chrX:153219790-153220074(-)$1	284	11	48	12.9567
CAGGUCUUAGUAAACCAGUUUUGGGAAACUUAUGAAG	chr1:39900002-39900385(+)$1	383	164	201	14.8267
GUUCAGUAUGCCUGGCUUCAAAGCAGAGGGCCCUGAA	chr11:62296659-62296917(-)$1	258	185	222	14.1240
CUGAGCCCAGGCAUGGUUCGUGCCAACCUCCCUCAGU	chrX:153587318-153587574(-)$1	256	120	157	13.5278
UACAUAGUUAGCAUGUCAAGAGUGUGUUAUUUAUAAU	chr17:57754215-57754432(+)$1	217	23	60	11.5011
AGGGAAAGUCAUCAGCCAAAAAGCCUUCACUCAGUCC	chr1:19440391-19440647(-)$1	256	28	65	12.5704
CUUCUAACAGUGAGUUGGGGGCAGCAAGUUGUGGGGG	chr1:19422929-19423222(-)$1	293	197	234	12.4379
GUCAGUGCCCCAGAUGUUGAAAUGCAGGGUCCUGACU	chr11:62298729-62298975(-)$1	246	30	67	12.3912
AGAGAGGGGUAAUGUUGUGAACAAGUUAUAGCCUUUG	chr17:26960649-26960869(-)$1	220	49	86	12.5775
GUGGUUAUGGCCUCCCUGUUAAGGAUGUUCCAAAGCA	chr17:45751903-45752142(+)$1	239	148	185	13.9358
CUCCUUCAGUGGCCAACGUUGGUAGUCAUUGUGACCU	chrX:153580925-153581135(-)$1	210	161	198	11.9397
CAUCACUGAUAUUUGCACAGAACAGUGUACCCUUAGU	chr2:183826875-183827106(-)$1	231	177	214	12.0627
GCAGGUUGAUGACAGGGGACACCUACACAGCCCAUGC	chr9:133750209-133750461(+)$1	252	113	150	12.8125
CAGAGACUGAGCUCAAGGAUACUUAUGCUCGUUGGCU	chr3:184023462-184023753(+)$1	291	190	227	14.0681
UCCCGGCCCGGGCCACUAGAGAGUUCGCUGACGCCGG	chr10:120840125-120840381(-)$1	256	134	171	15.0997
CCCUGCCCGCAAGCGCCGCCAGGUGGAGCGGGCCACG	chr3:127323719-127324022(+)$1	303	44	81	12.8249
GAGGUUGGGCACAGCUUACAGACAAGACCCUGAACCU	chr2:96953519-96953749(-)$1	230	88	125	12.0544
UGACUUUGAAAAUGGCCAGUGGGCCACAGAUGACAUC	chr1:154573537-154573862(-)$1	325	85	122	11.5938
CCCACUUCUGAGACUGGUUUCCCAAGCAGAAGUGGAG	chr3:9512269-9512566(+)$1	297	2	39	13.6780
CCCCAAGGGGUGGGCCAGGUGGGGAGCUGCCCCGUGG	chr3:184040918-184041129(+)$1	211	70	107	10.9308
CUGUGGUGUAAUUGUUGGCAACAAGAAUUUUAAUUUG	chr2:55528911-55529217(-)$1	306	233	270	11.4338
UCUGGGGACCCACCGCGUCAAAUGUCGGGUUCACCCC	chr17:78321477-78321742(+)$1	265	53	90	11.4861
AUAUCAAAGCCCCCAAGAUCCCCAUGCCUGACUUUGA	chr11:62292780-62293031(-)$1	251	12	49	12.5788
GACCUCCACUCAGAUCAGAACGUGAAGAAGGUAUAGA	chr10:120796592-120796854(-)$1	262	194	231	14.0640
UGGAGCCUGCUCUGGCUUUCCAGUUAGAGCUGAACCG	chr17:35549051-35549346(-)$1	295	128	165	11.9658
UGUGAUUGGCAGCUGUAUUAAACACAUUCCAAUCGCA	chr2:114697493-114697753(+)$1	260	53	90	14.3176
GGAGGAUAGAAGACAACGAAAGUUACUUGGGCUUCCU	chr17:38560967-38561192(-)$1	225	110	147	15.2703
UGAACCCAAUCUUUUUUGUGAUGAAGAGAUUCCCAUC	chr12:406158-406467(-)$1	309	133	170	11.5106
ACAAGGACCCUAAAUUUGCAGAGAUGGAGGAACGCUU	chr12:6706987-6707237(-)$1	250	84	121	13.7749
AGGUGCUGUCCCUUGUUGGGAAGCUGGAGGGCACCCG	chr2:96970429-96970667(-)$1	238	131	168	15.3229
CAUGAGUAUAUAUAAAUGUAUCAUAAAAUAUGUGAUU	chr8:48842314-48842518(-)$1	204	150	187	14.4242
CCCCUGGAGAUGAGAGACAGUGUCUGCCUUCUCUAGA	chr8:48800131-48800360(-)$1	229	155	192	10.9980
UGUGCCAGAAUCAAAUCUAAGGACUAGAAAUGCCAUU	chr2:152320927-152321225(+)$1	298	110	147	12.0604
UAAUGUUCUGUUCCAUGUCUUUCUUGUCAGAACACAC	chr1:19505532-19505760(-)$1	228	16	53	11.7981
GUGCCACCUUUGCCUCCUGAAGAGCCCCCAACAAUGC	chr21:34924800-34925112(+)$1	312	172	209	12.4410
AUGGAUUGUGCCUGACAUUGUGUGGGAAAUUGAUGAG	chr3:193333361-193333636(+)$1	275	148	185	11.2105
CGUGGAGGUGGGACAGGGGGACCAAACCACCCUCCUG	chr6:31599528-31599800(+)$1	272	117	154	14.0123
GCACUGGCUAAAACAAACCGCCUUGCAGAGUUAGAAG	chr17:57759534-57759803(+)$1	269	180	217	13.7165
CUGGCACAGCCUGCUAUUUUGAUAGCAGAGUCGUUGU	chr8:48701385-48701632(-)$1	247	173	210	11.7615
CUAUGAGAUUGAUGACAGGGAUGUCAACAAGAUCCUC	chr5:154181701-154181949(+)$1	248	44	81	12.5654
ACUUUAGAUGAUAUGAGACGUCUCAUAGACCUAGGGG	chr1:202710441-202710803(-)$1	362	163	200	11.5534
GUUGCAGUGCUGAAAGCGCGAGCGAAGCUGCUGCAGA	chr3:184049690-184049945(+)$1	255	66	103	12.2941
GUAGUGGUGAGAGAACUGUGGAGGCUGUCAGCAUUAG	chr3:184046620-184046874(+)$1	254	21	58	11.6799
GGGGUGGAGCCCAGGGCUGCUGCUCACUAGCCCAUCC	chrX:153580650-153580909(-)$1	259	46	83	14.0274
UCUGGGAUCCAUUGUUAACUUUAGCCAGGACCCAGAU	chr17:57746095-57746349(+)$1	254	55	92	13.9059
GGGGAGUCGCUGCACUGACGUCAGAUCCUGCAGUGCA	chr9:35712800-35713042(-)$1	242	56	93	15.0129
AUUGUAGUUCAUGGUAUACUUGUAUUUCUGAAUUAGA	chr2:54154436-54154716(-)$1	280	21	58	12.4071
GUGGGCCUUUCAUUUUUUACCUAGGUAUGUAAAUGGC	chr17:1584782-1585068(-)$1	286	60	97	11.6625
GCCAUCUCUAUUUGACUGAGAAGUAUGUGUGGAGGUG	chr1:19433089-19433314(-)$1	225	136	173	17.6008

#DB
(((((((((((.(((((....)))))))...))))))	chr1:19453003-19453249(-)$1	1	120	157	11.8710
..(((((.(((.(.(((...)))).)))))).)).))	chr17:57744057-57744292(+)$1	1	167	204	12.4964
((..(((((....((((....)))))))))..)))).	chrX:153579868-153580121(-)$1	1	7	44	12.3710
..((((....((((((.....))).)))....)))).	chr17:65850471-65850865(+)$1	1	264	301	11.5373
((((.(((((....(((....)))....)))))..))	chr6:31748730-31748992(-)$1	1	128	165	14.6634
(((....((((((.(((....)))..))))))....)	chr1:52269463-52269720(-)$1	1	153	190	12.5981
.(((((((....(((((......)))))...))))))	chr2:183826813-183827075(-)$1	1	147	184	12.6571
..(((.(((.....(((....)))...)))))).((.	chr3:25668162-25668412(-)$1	1	110	147	12.1953
..(((((((.(((.(((....))).)))..)))))))	chr3:184041639-184041865(+)$1	1	134	171	12.9649
(((.(.((((..(((((....))).))))))).))))	chrX:153219790-153220074(-)$1	1	11	48	12.9567
.((.(((((((...(((....)))...)))....)))	chr1:39900002-39900385(+)$1	1	164	201	14.8267
.(((((...((((.(((....)))...)))).)))))	chr11:62296659-62296917(-)$1	1	185	222	14.1240
(((((...(((..((((....)))).)))..))))).	chrX:153587318-153587574(-)$1	1	120	157	13.5278
...((((.(((((((.(....)))))))).)))))))	chr17:57754215-57754432(+)$1	1	23	60	11.5011
(((((.(((.....((......))....)))...)))	chr1:19440391-19440647(-)$1	1	28	65	12.5704
((....(((((..((((....))))..))))))))))	chr1:19422929-19423222(-)$1	1	197	234	12.4379
(((((.((((....(((......))))))).))))).	chr11:62298729-62298975(-)$1	1	30	67	12.3912
(.(((((.(((((.(((....))))))))..))))).	chr17:26960649-26960869(-)$1	1	49	86	12.5775
(((.((.(((.(..(((....)))..)..))))).))	chr17:45751903-45752142(+)$1	1	148	185	13.9358
.((...(((((((..((....)).))))))).)))))	chrX:153580925-153581135(-)$1	1	161	198	11.9397
..(((((((....(((((......)))))...)))))	chr2:183826875-183827106(-)$1	1	177	214	12.0627
((((((((.((...(((....))).)))))))..)))	chr9:133750209-133750461(+)$1	1	113	150	12.8125
(((....(((((..(((....)))..)))))))))))	chr3:184023462-184023753(+)$1	1	190	227	14.0681
.((((((...(((.(((....)))..)))...)))))	chr10:120840125-120840381(-)$1	1	134	171	15.0997
)((.((((((...((((....))))..))))))...)	chr3:127323719-127324022(+)$1	1	44	81	12.8249
((((((.((.....(((......)))...)).)))))	chr2:96953519-96953749(-)$1	1	88	125	12.0544
(...((((....(((((....))))))))).))))))	chr1:154573537-154573862(-)$1	1	85	122	11.5938
.(((((((((....(((....)))..)))))))))..	chr3:9512269-9512566(+)$1	1	2	39	13.6780
(((((.(((((((.((......))..))))))).)))	chr3:184040918-184041129(+)$1	1	70	107	10.9308
(.(.((...((((.(((....))).))))........	chr2:55528911-55529217(-)$1	1	233	270	11.4338
(.(((((((((...((((...)))).))))...))))	chr17:78321477-78321742(+)$1	1	53	90	11.4861
..((((((((...((.(.....).))...).))))))	chr11:62292780-62293031(-)$1	1	12	49	12.5788
((((((.(((....(((.....)))....)))...))	chr10:120796592-120796854(-)$1	1	194	231	14.0640
(((..(..(((((((((....))))))))).)..)))	chr17:35549051-35549346(-)$1	1	128	165	11.9658
(((((((((....(((.....)))....)))))))))	chr2:114697493-114697753(+)$1	1	53	90	14.3176
(((((....(((..(((....))).)))...))))))	chr17:38560967-38561192(-)$1	1	110	147	15.2703
(((....(((((((((......)))))))))....))	chr12:406158-406467(-)$1	1	133	170	11.5106
(...(...(((..((((....))))..)))..)..))	chr12:6706987-6707237(-)$1	1	84	121	13.7749
.((((((.(((...(((....))).))).))))))).	chr2:96970429-96970667(-)$1	1	131	168	15.3229
(((((.(((((((..(((...)))...))))))).))	chr8:48842314-48842518(-)$1	1	150	187	14.4242
)).(((((((.(..((((...))))..).))))))).	chr8:48800131-48800360(-)$1	1	155	192	10.9980
.(((.((...((...((....))...))..)).))).	chr2:152320927-152321225(+)$1	1	110	147	12.0604
...(((((((...((.(.....).)).)))))))...	chr1:19505532-19505760(-)$1	1	16	53	11.7981
(((.((...(((.(((.....)))....)))...)).	chr21:34924800-34925112(+)$1	1	172	209	12.4410
((.((((...(((.(((...)))))).)))).))...	chr3:193333361-193333636(+)$1	1	148	185	11.2105
((.((((((((....((....))...))).)))))))	chr6:31599528-31599800(+)$1	1	117	154	14.0123
...((((((....(((......)))...))))))..)	chr17:57759534-57759803(+)$1	1	180	217	13.7165
(((.(((((((((((((....)))))))....)))))	chr8:48701385-48701632(-)$1	1	173	210	11.7615
(.((((((((..(((((....)))))....))).)))	chr5:154181701-154181949(+)$1	1	44	81	12.5654
.((((((....((((((....))))))...)))))).	chr1:202710441-202710803(-)$1	1	163	200	11.5534
.((((((((((....((....))..))).))))))).	chr3:184049690-184049945(+)$1	1	66	103	12.2941
.(((((.(((.((..((....)).)).))).))))).	chr3:184046620-184046874(+)$1	1	21	58	11.6799
(((((((.((...((((....))))....))))))))	chrX:153580650-153580909(-)$1	1	46	83	14.0274
((((((.(((...((((....))))..))))))))).	chr17:57746095-57746349(+)$1	1	55	92	13.9059
.((....((((((((((....)))....)))))))..	chr9:35712800-35713042(-)$1	1	56	93	15.0129
(((.(((((((.(((((....)))))..))))))).)	chr2:54154436-54154716(-)$1	1	21	58	12.4071
(((((((((((((.(((.....))).))).))).)))	chr17:1584782-1585068(-)$1	1	60	97	11.6625
.((((((((((...(((....)))....)))))))))	chr1:19433089-19433314(-)$1	1	136	173	17.6008

#PSSM
d : 0.15	" : 0.13	e : 0.10	f : 0.10	c : 0.10	! : 0.08	: : 0.08	g : 0.05	= : 0.03	[ : 0.03	H : 0.01	h : 0.01	i : 0.01	# : 0.01	b : 0.01	$ : 0.01	
f : 0.15	" : 0.12	d : 0.10	c : 0.10	e : 0.10	b : 0.08	g : 0.06	[ : 0.06	= : 0.05	! : 0.03	: : 0.03	i : 0.03	a : 0.01	h : 0.01	
e : 0.15	f : 0.15	g : 0.13	d : 0.10	b : 0.08	" : 0.08	c : 0.06	= : 0.05	i : 0.03	[ : 0.03	! : 0.01	# : 0.01	a : 0.01	h : 0.01	: : 0.01	
e : 0.17	g : 0.15	f : 0.15	[ : 0.13	# : 0.08	d : 0.06	c : 0.05	" : 0.05	! : 0.03	i : 0.03	= : 0.03	b : 0.01	
e : 0.18	g : 0.17	f : 0.17	d : 0.10	# : 0.08	c : 0.05	b : 0.05	[ : 0.03	a : 0.03	i : 0.03	= : 0.03	" : 0.01	! : 0.01	
g : 0.17	e : 0.15	f : 0.15	# : 0.10	[ : 0.10	d : 0.08	b : 0.06	" : 0.05	c : 0.03	i : 0.03	a : 0.01	= : 0.01	
g : 0.22	e : 0.13	# : 0.10	d : 0.10	f : 0.10	" : 0.08	[ : 0.08	c : 0.06	i : 0.03	! : 0.01	b : 0.01	= : 0.01	
g : 0.22	c : 0.13	" : 0.13	e : 0.10	[ : 0.08	d : 0.08	f : 0.06	# : 0.05	i : 0.05	b : 0.01	! : 0.01	= : 0.01	
c : 0.25	g : 0.20	" : 0.10	e : 0.08	# : 0.08	f : 0.06	i : 0.06	d : 0.05	b : 0.03	[ : 0.01	= : 0.01	
c : 0.25	# : 0.13	g : 0.13	d : 0.08	e : 0.06	b : 0.05	f : 0.05	$ : 0.05	" : 0.05	i : 0.05	[ : 0.01	a : 0.01	= : 0.01	
c : 0.24	# : 0.18	g : 0.12	" : 0.08	b : 0.05	$ : 0.05	d : 0.05	e : 0.05	[ : 0.05	! : 0.03	i : 0.03	f : 0.01	= : 0.01	
# : 0.20	" : 0.17	c : 0.12	g : 0.10	! : 0.08	[ : 0.05	$ : 0.05	f : 0.03	d : 0.03	e : 0.03	a : 0.03	i : 0.03	b : 0.03	
" : 0.18	# : 0.17	! : 0.12	e : 0.10	g : 0.10	c : 0.08	$ : 0.05	f : 0.03	b : 0.03	d : 0.03	i : 0.03	a : 0.01	[ : 0.01	
[ : 0.17	d : 0.12	! : 0.12	e : 0.10	# : 0.10	" : 0.10	c : 0.06	$ : 0.05	b : 0.05	g : 0.05	i : 0.03	f : 0.01	
c : 0.48	d : 0.15	e : 0.10	b : 0.06	! : 0.05	g : 0.03	i : 0.03	# : 0.03	" : 0.01	f : 0.01	
c : 0.49	d : 0.15	b : 0.12	e : 0.10	[ : 0.05	i : 0.03	g : 0.01	f : 0.01	
c : 0.43	d : 0.15	e : 0.10	b : 0.08	o : 0.06	n : 0.05	a : 0.05	i : 0.01	g : 0.01	f : 0.01	
m : 0.65	n : 0.12	o : 0.12	l : 0.03	d : 0.03	e : 0.01	c : 0.01	
m : 0.65	o : 0.13	n : 0.12	l : 0.08	
m : 0.65	o : 0.13	n : 0.12	l : 0.08	
m : 0.65	o : 0.13	n : 0.12	l : 0.05	c : 0.03	
c : 0.41	d : 0.15	o : 0.13	b : 0.08	e : 0.06	n : 0.06	a : 0.01	i : 0.01	g : 0.01	f : 0.01	
c : 0.46	d : 0.15	b : 0.12	e : 0.06	o : 0.06	g : 0.03	a : 0.03	i : 0.03	f : 0.01	
c : 0.48	d : 0.15	e : 0.08	] : 0.06	g : 0.03	b : 0.03	i : 0.03	3 : 0.03	a : 0.01	o : 0.01	f : 0.01	2 : 0.01	
d : 0.15	] : 0.13	e : 0.12	2 : 0.12	4 : 0.10	3 : 0.10	c : 0.10	g : 0.05	b : 0.05	i : 0.03	f : 0.01	
2 : 0.18	c : 0.15	e : 0.13	4 : 0.13	3 : 0.12	b : 0.08	] : 0.05	g : 0.05	i : 0.03	d : 0.01	f : 0.01	
c : 0.17	4 : 0.15	3 : 0.12	2 : 0.10	e : 0.08	b : 0.06	g : 0.06	d : 0.06	i : 0.05	] : 0.05	f : 0.03	a : 0.01	
c : 0.25	4 : 0.15	e : 0.12	d : 0.12	g : 0.10	3 : 0.06	i : 0.05	b : 0.03	f : 0.03	2 : 0.03	a : 0.01	
c : 0.20	e : 0.12	d : 0.12	g : 0.12	3 : 0.10	4 : 0.08	i : 0.06	f : 0.05	2 : 0.05	] : 0.05	= : 0.01	
c : 0.17	g : 0.13	3 : 0.10	d : 0.10	e : 0.08	f : 0.06	2 : 0.06	i : 0.06	4 : 0.05	] : 0.05	b : 0.03	> : 0.01	a : 0.01	= : 0.01	
g : 0.15	c : 0.13	3 : 0.10	f : 0.10	e : 0.08	] : 0.08	2 : 0.06	d : 0.06	4 : 0.05	b : 0.05	i : 0.05	> : 0.01	= : 0.01	
g : 0.22	e : 0.17	f : 0.10	] : 0.08	c : 0.08	3 : 0.08	4 : 0.06	2 : 0.03	a : 0.03	i : 0.03	d : 0.01	> : 0.01	b : 0.01	= : 0.01	
g : 0.24	e : 0.15	f : 0.13	b : 0.06	c : 0.06	3 : 0.06	d : 0.05	4 : 0.05	] : 0.03	2 : 0.03	i : 0.03	> : 0.01	a : 0.01	= : 0.01	
g : 0.22	e : 0.15	f : 0.12	b : 0.06	2 : 0.06	3 : 0.06	d : 0.05	4 : 0.05	] : 0.05	= : 0.03	c : 0.03	i : 0.03	: : 0.01	> : 0.01	
g : 0.18	e : 0.18	f : 0.12	d : 0.08	c : 0.06	] : 0.05	2 : 0.05	4 : 0.05	3 : 0.05	b : 0.03	= : 0.03	i : 0.03	> : 0.01	h : 0.01	
e : 0.17	g : 0.15	d : 0.13	c : 0.12	f : 0.12	4 : 0.05	= : 0.05	b : 0.03	3 : 0.03	: : 0.01	> : 0.01	h : 0.01	i : 0.01	a : 0.01	2 : 0.01	] : 0.01	
c : 0.15	g : 0.12	d : 0.12	f : 0.10	] : 0.08	4 : 0.08	e : 0.06	3 : 0.05	= : 0.05	: : 0.05	! : 0.01	b : 0.01	> : 0.01	h : 0.01	i : 0.01	2 : 0.01	

#score	748.1279915627797
#seq	58
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_CDS_m2_run1.txt

#BEAR
[ffffff!!ddddmmmmdddd4444ffff	chr19:54678022-54678317(-)$1	295	128	157	13.7718
##bbccc[eeeeemmmmeeeee22ccc]b	chrX:152957471-152957749(+)$1	278	151	180	10.2838
ddddddd!!ddddmmmmdddd]dddd22d	chr11:65343663-65343902(+)$1	239	37	66	12.1380
d"""bb[bbddddmmmmdddd]bb]bb>>	chr21:47574134-47574385(-)$1	251	53	82	10.7723
ggg"""a!!ddddmmmmdddd22a22ggg	chr5:179248442-179248718(+)$1	276	173	202	14.1044
ggeeeee!!ddddmmmmdddd22eeeee:	chr16:2867269-2867538(+)$1	269	211	240	12.5015
==========[bbmmmmbb]=========	chr11:637281-637544(+)$1	263	132	161	11.1065
eeeee[gggggggmmmmggggggg22eee	chr11:126146853-126147099(+)$1	246	213	242	9.8198
[eeeee"""cccmmmmccc]eeeee22gg	chr2:171974148-171974418(-)$1	270	78	107	9.5606
hhheeeee[ddddmmmmdddd22eeeee:	chr14:24901238-24901545(+)$1	307	206	235	11.6153
chhhhhhhhddddmmmmdddd22hhhhhh	chr19:14266798-14267041(+)$1	243	34	63	11.0808
eee[bb"""ddddmmmmdddd333bb333	chr9:80645327-80645588(-)$1	261	79	108	13.6927
[ccccccbbddddmmmmdddd]bb]ccc]	chr12:53849568-53849770(+)$1	202	94	123	12.7536
###dddda[ddddmmmmdddd22a]dddd	chr19:1104607-1104921(+)$1	314	216	245	12.9682
ee[ccc"""ddddmmmmdddd333ccc]e	chr2:172379606-172379895(+)$1	289	160	189	14.8911
[ggggggg!!cccmmmmccc]ggggggg]	chr14:104165098-104165386(+)$1	288	182	211	11.9797
gg[dddd####bbmmmmbbddddgggggg	chr12:49434647-49434906(-)$1	259	185	214	10.9686
iiiiiiiiiddddmmmmdddd22iiiiii	chr12:132403077-132403312(+)$1	235	154	183	13.6937
fffff[a!!ddddmmmmdddda]ffffff	chr6:3259130-3259425(+)$1	295	75	104	12.8416
fffff"""eeeeemmmmeeeee4444fff	chr8:30670178-30670439(-)$1	261	38	67	11.3300
dddd!!gggggggmmmmggggggg22ddd	chr11:236089-236384(-)$1	295	84	113	9.2217
cc[ccc"""ddddoooooodddd]ccccc	chr7:127670080-127670351(+)$1	271	240	269	10.4315
fffff!!aacccooooooccc]a]a22ff	chr7:127669392-127669688(+)$1	296	74	103	8.7614
hhhhhh[a"""bbmmmmbb4444a]hhhh	chr17:34171548-34171900(+)$1	352	6	35	10.5452
f"""ccc!!ddddmmmmdddd4444ccc2	chr12:48172666-48172942(+)$1	276	48	77	14.2625
####a[bb[ddddmmmmdddd]bb]a333	chr19:36504821-36505178(-)$1	357	61	90	12.9996
hhhhhhh"""cccmmmmccc333hhhhhh	chr16:28878019-28878288(+)$1	269	26	55	10.9798
c"""dddd!!cccmmmmccc22dddd333	chr9:126692083-126692383(-)$1	300	236	265	10.9971
cc[ffffffddddmmmmdddd333fffff	chr19:41307000-41307271(+)$1	271	194	223	12.8528
gggg[ccc[ddddmmmmdddd]ccc22gg	chr15:80215712-80215959(-)$1	247	34	63	13.5606
dd[eeeeeeeeeemmmmeeeee4444eee	chr20:62331700-62331959(-)$1	259	56	85	10.7115
:cccdddd[ddddllldddd333dddd]c	chr12:49318765-49319090(-)$1	325	31	60	9.1412
fffff[bb"""bbmmmmbb333bb]ffff	chr17:80231150-80231394(-)$1	244	99	128	9.9512
[ccccccbbddddmmmmdddd]bb]ccc]	chr12:53849633-53849867(+)$1	234	29	58	12.7536
hhhhhh!!eeeeemmmmeeeee4444hhh	chrX:151139627-151139905(-)$1	278	24	53	10.7794
fff[ccca[eeeeemmmmeeeee]a]ccc	chr19:10407086-10407372(+)$1	286	222	251	9.3263
ee[ccc[a[ddddmmmmdddd]a]cccee	chr4:129208544-129208810(-)$1	266	56	85	13.9863
f[eeeee"""cccmmmmccc]eeeeefff	chr19:7970590-7970831(+)$1	241	18	47	11.0922
dddda[dddd[bbmmmmbbdddd]a22dd	chr11:558788-559063(+)$1	275	131	160	9.4779
iiiiiiiiccccccmmmmccc]ccc]iii	chr1:1256375-1256627(-)$1	252	109	138	9.8145
#ggggggg[ddddmmmmddddgggggggd	chr16:1835774-1836085(+)$1	311	220	249	13.1059
gggg$$$$$ddddllldddd4444ggggg	chr11:639265-639550(+)$1	285	32	61	10.5342
a[dddd[ccc[bbmmmmbb]cccdddd]a	chr22:45724199-45724444(+)$1	245	98	127	9.2938
deeeee"""ddddmmmmdddd666666ee	chr19:42788681-42788957(+)$1	276	77	106	11.3511
[ccccccbbddddmmmmdddd]bb]ccc]	chr12:53849570-53849810(+)$1	240	92	121	12.7536
eeaeeeee[acccmmmmccc22a]eeeee	chr16:90015672-90015984(+)$1	312	212	241	10.9803
ggggggg"""cccmmmmccc4444ggggg	chr19:49841161-49841433(-)$1	272	241	270	13.0883
b[ffffff[a[bbmmmmbb]a]ffffff]	chr8:144672159-144672426(-)$1	267	96	125	9.7362
!!eeeee[eeeeemmmmeeeeeeeeee22	chr2:58386577-58386860(-)$1	283	105	134	10.2710
c[dddd!!eeeeemmmmeeeee]dddd]c	chr1:2333430-2333701(+)$1	271	136	165	10.6051
eee"""dddd[bbmmmmbbdddd4444ee	chr1:1257263-1257574(-)$1	311	9	38	10.1629
!!ffffff[ddddmmmmddddffffff44	chr19:41306753-41306985(+)$1	232	14	43	12.0179

#otherMatches

#Seq PSSM
aucugggggcagugggcacuggggaccug	chr19:54678022-54678317(-)$1	295	128	157	13.7718
CAGGCACACCUGUGGCAACGGGAGGUGAC	chrX:152957471-152957749(+)$1	278	151	180	10.2838
CCGGGCCGGGCCAGCGGUGGCGGGCCAGC	chr11:65343663-65343902(+)$1	239	37	66	12.1380
GUGUCUCGGGGUGCAGCCACCUCCAAGCU	chr21:47574134-47574385(-)$1	251	53	82	10.7723
GGUAAACAAGCGCGGGGGUGCGGGGGACU	chr5:179248442-179248718(+)$1	276	173	202	14.1044
UCCUGCCAGGGCCGUUGGGCCGAGGUGGA	chr16:2867269-2867538(+)$1	269	211	240	12.5015
CGCUGGUGGGGGGCGUGCUGCUCAUCGGC	chr11:637281-637544(+)$1	263	132	161	11.1065
GAAGGUAACUGGCAAGGGCUGGUUUUCCU	chr11:126146853-126147099(+)$1	246	213	242	9.8198
AUCCAAGAAGGCAAGAGUUAUUGGAAGCU	chr2:171974148-171974418(-)$1	270	78	107	9.5606
CGGUGCCCAUGGCUCCUGUCACAGGGCAG	chr14:24901238-24901545(+)$1	307	206	235	11.6153
acuaccuuuuaggacacccugGAAGAGGU	chr19:14266798-14267041(+)$1	243	34	63	11.0808
AUUAUCAGUGCCCUAUGGGGUCAGGAGGG	chr9:80645327-80645588(-)$1	261	79	108	13.6927
AUCUAGAGUGGUGCACGUAUCAACAUCUC	chr12:53849568-53849770(+)$1	202	94	123	12.7536
AAGGCCCCAGCGUGCAGGCGCAGGAGGGC	chr19:1104607-1104921(+)$1	314	216	245	12.9682
GGGAAAAGAUUGCCGGAGCGAGAAUUUGC	chr2:172379606-172379895(+)$1	289	160	189	14.8911
CAGCCAGCAGUCUCACCAGGAGCUGGUUA	chr14:104165098-104165386(+)$1	288	182	211	11.9797
UUUGGGGAGUCCCGGAAGGCCCUAGAGGU	chr12:49434647-49434906(-)$1	259	185	214	10.9686
GGCUGGAGUGAGCAAAGGUUCCCAUUCUG	chr12:132403077-132403312(+)$1	235	154	183	13.6937
CAGCGGCGAGGACCCGGGUCUGGCGCUGU	chr6:3259130-3259425(+)$1	295	75	104	12.8416
GCUCGCCUUUUCCCGGCGGAAAUGCCCGA	chr8:30670178-30670439(-)$1	261	38	67	11.3300
CAGCCCUCCGGCUGUGGGGCCGGGUAGUU	chr11:236089-236384(-)$1	295	84	113	9.2217
GGCUGGCCAGGCCGUUGAAGGCCCCCACC	chr7:127670080-127670351(+)$1	271	240	269	10.4315
CAAGGUGCCGUCGUUGAGGACAGAGAUCC	chr7:127669392-127669688(+)$1	296	74	103	8.7614
uaugguggagacagaaguggggguggcua	chr17:34171548-34171900(+)$1	352	6	35	10.5452
auauucuugguauucuuaugcaaauaggc	chr12:48172666-48172942(+)$1	276	48	77	14.2625
GGGAUGUUGAAUUUGGAAAUUGGAGGGGA	chr19:36504821-36505178(-)$1	357	61	90	12.9996
AGGGGACUGGUCAGUGAUGGAACGUCCCC	chr16:28878019-28878288(+)$1	269	26	55	10.9798
cggagccgggccgggcgcggggcggcgag	chr9:126692083-126692383(-)$1	300	236	265	10.9971
AUUGCCUGGGUGGAAGGCCAUGAACCAGG	chr19:41307000-41307271(+)$1	271	194	223	12.8528
GGAGUGAGCGGCGUGGACGCCUCUUUCCU	chr15:80215712-80215959(-)$1	247	34	63	13.5606
UCACACCCGCUGUCUUCACAGCAAAGGGG	chr20:62331700-62331959(-)$1	259	56	85	10.7115
AGCCCCCGUGGGCCGAGCCUUGUUGGGUG	chr12:49318765-49319090(-)$1	325	31	60	9.1412
CGGCCGGGAGGGCAGGAGCGAAUCGGGCC	chr17:80231150-80231394(-)$1	244	99	128	9.9512
AUCUAGAGUGGUGCACGUAUCAACAUCUC	chr12:53849633-53849867(+)$1	234	29	58	12.7536
uguuuuucaagaguuugcuuuuaaauaaa	chrX:151139627-151139905(-)$1	278	24	53	10.7794
CCGCGGGCCGGGGGACGCCCCCCAGACUC	chr19:10407086-10407372(+)$1	286	222	251	9.3263
GCUGCUGGGGGCCUACCGGCUGUGGGUGC	chr4:129208544-129208810(-)$1	266	56	85	13.9863
UUGAUUUCUUUUCUUUUGGACGAAUCAGU	chr19:7970590-7970831(+)$1	241	18	47	11.0922
UCUCGGGGGCUGCAGGUGCGCCUGCUGGA	chr11:558788-559063(+)$1	275	131	160	9.4779
GGGGCGGGGGGCGCAGCAGUGACUCAUCU	chr1:1256375-1256627(-)$1	252	109	138	9.8145
UGGAGCUGUGCUGGAAGCAGCCGGCUCCC	chr16:1835774-1836085(+)$1	311	220	249	13.1059
CGGUCCUCUGGCCUCUGGCUCACAGCCGG	chr11:639265-639550(+)$1	285	32	61	10.5342
UGCAGGUGUGGGGAGUUCUGUGCCCUGGG	chr22:45724199-45724444(+)$1	245	98	127	9.2938
GGGCCCAAGCGGCGACGGCCGAGGAGCGG	chr19:42788681-42788957(+)$1	276	77	106	11.3511
AUCUAGAGUGGUGCACGUAUCAACAUCUC	chr12:53849570-53849810(+)$1	240	92	121	12.7536
GUCCCUGCGAGCCCCUGGGCCCUGGCAGG	chr16:90015672-90015984(+)$1	312	212	241	10.9803
CUUCGCUCCAGCUGAGAGGCCACCAGUGA	chr19:49841161-49841433(-)$1	272	241	270	13.0883
GAGGGUGGGCACGGGGCUGCGGCCACCCG	chr8:144672159-144672426(-)$1	267	96	125	9.7362
GCGUUUGUCUCUUCACUAAGAGUAAACUG	chr2:58386577-58386860(-)$1	283	105	134	10.2710
AGCUGCAAGGCUGGAGGCGGCCGGCAGGU	chr1:2333430-2333701(+)$1	271	136	165	10.6051
UCUGUGGCCUUAGGUCCCUGGGCAUGAAG	chr1:1257263-1257574(-)$1	311	9	38	10.1629
AGCGCUGGUCACCAAGGGGUGCCAGCGAU	chr19:41306753-41306985(+)$1	232	14	43	12.0179

#DB
.((((((..((((....))))....))))	chr19:54678022-54678317(-)$1	1	128	157	13.7718
..(((((.(((((....)))))..))).)	chrX:152957471-152957749(+)$1	1	151	180	10.2838
(((((((..((((....)))).))))..)	chr11:65343663-65343902(+)$1	1	37	66	12.1380
(...((.((((((....)))).)).))..	chr21:47574134-47574385(-)$1	1	53	82	10.7723
(((...(..((((....))))..)..)))	chr5:179248442-179248718(+)$1	1	173	202	14.1044
))(((((..((((....))))..))))).	chr16:2867269-2867538(+)$1	1	211	240	12.5015
((((((((((.((....)).)))))))))	chr11:637281-637544(+)$1	1	132	161	11.1065
(((((.(((((((....)))))))..)))	chr11:126146853-126147099(+)$1	1	213	242	9.8198
.(((((...(((....))).)))))..))	chr2:171974148-171974418(-)$1	1	78	107	9.5606
)))(((((.((((....))))..))))).	chr14:24901238-24901545(+)$1	1	206	235	11.6153
)((((((((((((....))))..))))))	chr19:14266798-14267041(+)$1	1	34	63	11.0808
(((.((...((((....))))...))...	chr9:80645327-80645588(-)$1	1	79	108	13.6927
.((((((((((((....)))).)).))).	chr12:53849568-53849770(+)$1	1	94	123	12.7536
...(((((.((((....))))..).))))	chr19:1104607-1104921(+)$1	1	216	245	12.9682
((.(((...((((....))))...))).)	chr2:172379606-172379895(+)$1	1	160	189	14.8911
.(((((((..(((....))).))))))).	chr14:104165098-104165386(+)$1	1	182	211	11.9797
((.((((....((....))))))))))))	chr12:49434647-49434906(-)$1	1	185	214	10.9686
(((((((((((((....))))..))))))	chr12:132403077-132403312(+)$1	1	154	183	13.6937
(((((.(..((((....))))).))))))	chr6:3259130-3259425(+)$1	1	75	104	12.8416
(((((...(((((....)))))....)))	chr8:30670178-30670439(-)$1	1	38	67	11.3300
((((..(((((((....)))))))..)))	chr11:236089-236384(-)$1	1	84	113	9.2217
((.(((...((((......)))).)))))	chr7:127670080-127670351(+)$1	1	240	269	10.4315
(((((..(((((......))).).)..))	chr7:127669392-127669688(+)$1	1	74	103	8.7614
((((((.(...((....))....).))))	chr17:34171548-34171900(+)$1	1	6	35	10.5452
(...(((..((((....))))....))).	chr12:48172666-48172942(+)$1	1	48	77	14.2625
....(.((.((((....)))).)).)...	chr19:36504821-36505178(-)$1	1	61	90	12.9996
(((((((...(((....)))...))))))	chr16:28878019-28878288(+)$1	1	26	55	10.9798
(...((((..(((....)))..))))...	chr9:126692083-126692383(-)$1	1	236	265	10.9971
((.((((((((((....))))...)))))	chr19:41307000-41307271(+)$1	1	194	223	12.8528
((((.(((.((((....)))).)))..))	chr15:80215712-80215959(-)$1	1	34	63	13.5606
((.((((((((((....)))))....)))	chr20:62331700-62331959(-)$1	1	56	85	10.7115
.(((((((.((((...))))...)))).)	chr12:49318765-49319090(-)$1	1	31	60	9.1412
(((((.((...((....))...)).))))	chr17:80231150-80231394(-)$1	1	99	128	9.9512
.((((((((((((....)))).)).))).	chr12:53849633-53849867(+)$1	1	29	58	12.7536
((((((..(((((....)))))....)))	chrX:151139627-151139905(-)$1	1	24	53	10.7794
(((.((((.(((((....))))).).)))	chr19:10407086-10407372(+)$1	1	222	251	9.3263
((.(((.(.((((....)))).).)))))	chr4:129208544-129208810(-)$1	1	56	85	13.9863
(.(((((...(((....))).))))))))	chr19:7970590-7970831(+)$1	1	18	47	11.0922
(((((.((((.((....)))))).)..))	chr11:558788-559063(+)$1	1	131	160	9.4779
((((((((((((((....))).))).)))	chr1:1256375-1256627(-)$1	1	109	138	9.8145
.(((((((.((((....))))))))))))	chr16:1835774-1836085(+)$1	1	220	249	13.1059
((((.....((((...))))....)))))	chr11:639265-639550(+)$1	1	32	61	10.5342
(.((((.(((.((....)).))))))).)	chr22:45724199-45724444(+)$1	1	98	127	9.2938
((((((...((((....))))......))	chr19:42788681-42788957(+)$1	1	77	106	11.3511
.((((((((((((....)))).)).))).	chr12:53849570-53849810(+)$1	1	92	121	12.7536
((((((((.((((....)))..).)))))	chr16:90015672-90015984(+)$1	1	212	241	10.9803
(((((((...(((....)))....)))))	chr19:49841161-49841433(-)$1	1	241	270	13.0883
(.((((((.(.((....)).).)))))).	chr8:144672159-144672426(-)$1	1	96	125	9.7362
..(((((.(((((....))))))))))..	chr2:58386577-58386860(-)$1	1	105	134	10.2710
(.((((..(((((....))))).)))).)	chr1:2333430-2333701(+)$1	1	136	165	10.6051
(((...((((.((....))))))....))	chr1:1257263-1257574(-)$1	1	9	38	10.1629
..((((((.((((....))))))))))..	chr19:41306753-41306985(+)$1	1	14	43	12.0179

#PSSM
f : 0.13	[ : 0.11	d : 0.11	g : 0.11	e : 0.11	c : 0.09	# : 0.07	h : 0.07	i : 0.03	! : 0.03	= : 0.01	: : 0.01	a : 0.01	b : 0.01	
g : 0.15	e : 0.15	f : 0.11	c : 0.11	h : 0.09	d : 0.07	[ : 0.07	# : 0.05	" : 0.05	i : 0.03	! : 0.03	= : 0.01	
f : 0.15	e : 0.15	g : 0.11	[ : 0.11	d : 0.09	h : 0.09	c : 0.07	" : 0.05	# : 0.03	i : 0.03	b : 0.01	= : 0.01	a : 0.01	
e : 0.17	f : 0.15	d : 0.13	c : 0.13	" : 0.09	g : 0.09	h : 0.07	[ : 0.03	i : 0.03	b : 0.01	= : 0.01	# : 0.01	
c : 0.17	e : 0.17	f : 0.15	d : 0.13	h : 0.07	g : 0.05	b : 0.03	" : 0.03	i : 0.03	a : 0.03	= : 0.01	! : 0.01	[ : 0.01	$ : 0.01	
c : 0.19	e : 0.15	d : 0.13	[ : 0.09	f : 0.07	h : 0.07	" : 0.05	g : 0.05	b : 0.03	i : 0.03	! : 0.03	= : 0.01	$ : 0.01	
c : 0.13	d : 0.13	e : 0.11	" : 0.11	g : 0.09	f : 0.07	[ : 0.07	! : 0.05	a : 0.03	h : 0.03	i : 0.03	b : 0.03	= : 0.01	$ : 0.01	
" : 0.17	! : 0.15	b : 0.11	a : 0.09	g : 0.07	d : 0.07	e : 0.05	f : 0.05	[ : 0.03	i : 0.03	c : 0.03	= : 0.01	h : 0.01	# : 0.01	$ : 0.01	
[ : 0.21	" : 0.19	! : 0.15	e : 0.11	b : 0.07	g : 0.03	d : 0.03	c : 0.03	= : 0.01	h : 0.01	# : 0.01	i : 0.01	a : 0.01	f : 0.01	$ : 0.01	
d : 0.53	e : 0.13	" : 0.09	c : 0.07	g : 0.03	! : 0.03	a : 0.03	= : 0.01	# : 0.01	
d : 0.49	c : 0.17	e : 0.13	[ : 0.09	g : 0.03	" : 0.03	# : 0.01	
d : 0.49	c : 0.17	b : 0.15	e : 0.13	g : 0.03	
d : 0.49	b : 0.15	e : 0.13	c : 0.13	g : 0.03	m : 0.01	o : 0.01	
m : 0.88	o : 0.03	l : 0.03	e : 0.01	c : 0.01	
m : 0.92	o : 0.03	l : 0.03	
m : 0.92	o : 0.03	l : 0.03	
m : 0.90	o : 0.03	d : 0.03	c : 0.01	
d : 0.48	b : 0.15	c : 0.13	e : 0.11	g : 0.03	o : 0.03	m : 0.03	
d : 0.48	c : 0.17	b : 0.15	e : 0.13	g : 0.03	o : 0.01	
d : 0.55	c : 0.15	e : 0.13	] : 0.07	g : 0.03	4 : 0.01	3 : 0.01	
d : 0.51	e : 0.15	c : 0.05	4 : 0.05	3 : 0.05	g : 0.03	] : 0.03	2 : 0.03	= : 0.01	a : 0.01	
] : 0.21	e : 0.17	2 : 0.15	3 : 0.11	4 : 0.09	g : 0.07	d : 0.07	= : 0.01	a : 0.01	c : 0.01	6 : 0.01	f : 0.01	
4 : 0.15	2 : 0.13	d : 0.11	b : 0.11	3 : 0.09	g : 0.07	e : 0.07	a : 0.05	c : 0.05	] : 0.03	f : 0.03	= : 0.01	6 : 0.01	
4 : 0.15	b : 0.11	] : 0.11	d : 0.09	e : 0.09	g : 0.09	a : 0.05	3 : 0.05	f : 0.05	h : 0.03	c : 0.03	2 : 0.01	= : 0.01	i : 0.01	6 : 0.01	
] : 0.15	4 : 0.11	c : 0.11	e : 0.11	d : 0.09	g : 0.09	f : 0.07	2 : 0.05	a : 0.05	h : 0.03	= : 0.01	b : 0.01	i : 0.01	6 : 0.01	
c : 0.15	2 : 0.13	f : 0.11	d : 0.11	e : 0.09	g : 0.09	4 : 0.07	h : 0.05	b : 0.03	] : 0.03	= : 0.01	i : 0.01	a : 0.01	6 : 0.01	
c : 0.17	f : 0.15	g : 0.11	e : 0.11	2 : 0.09	d : 0.09	h : 0.07	3 : 0.05	i : 0.03	b : 0.01	= : 0.01	6 : 0.01	4 : 0.01	
f : 0.15	g : 0.15	e : 0.15	c : 0.11	] : 0.09	h : 0.07	3 : 0.05	d : 0.05	2 : 0.03	i : 0.03	> : 0.01	= : 0.01	4 : 0.01	
f : 0.13	e : 0.13	g : 0.11	d : 0.09	] : 0.09	h : 0.07	c : 0.07	3 : 0.05	: : 0.03	i : 0.03	2 : 0.03	b : 0.01	> : 0.01	= : 0.01	a : 0.01	4 : 0.01	

#score	597.4231264762367
#seq	52
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_transcript_m1_run2.txt

#BEAR
eeeee"""eeeee!!cccnnnnnccc22eeeee22eeee	chr16:89513842-89514075(-)$1	233	51	90	14.5554
[ccc[eeeee[ccc[ccclllccc]ccc]eeeee]ccc]	chr18:55798288-55798639(+)$1	351	248	287	12.8237
========[ccc!!ddddnnnnndddd22ccc=======	chr17:40628529-40628799(+)$1	270	44	83	18.6153
b####ccc[dddd[ddddnnnnndddd]dddd]ccc666	chr6:45273914-45274178(-)$1	264	117	156	13.5346
eeee!!iiiiiiiiicccnnnnnccc]iiiiiiiii000	chr16:89511796-89512070(-)$1	274	209	248	17.0747
=============!!cccnnnnnccc333==========	chr14:39736746-39737022(+)$1	276	53	92	21.3814
===========####cccnnnnnccc333==========	chr2:102317669-102318075(+)$1	406	308	347	21.0645
####ggggggg!!eeeeellleeeee333ggggggg22=	chr19:34883327-34883594(+)$1	267	154	193	14.4121
iiiiiii"""ccc[a[cccmmmmccc]a]ccc4444iii	chr19:34877329-34877648(+)$1	319	59	98	15.4702
fff!!dddd!!ccc[cccnnnnnccc]ccc22dddd333	chr2:148720208-148720473(-)$1	265	109	148	15.1921
[dddd[ccc####ddddoooooodddd4444cccdddd]	chr9:139996919-139997192(+)$1	273	161	200	12.9397
=============!!cccnnnnnccc333==========	chr14:39736646-39736899(+)$1	253	153	192	21.3814
[ccc!!aiiiiiiiii[bbmmmmbbiiiiiiiii]a444	chr21:46281185-46281581(-)$1	396	80	119	14.2651
"""eeeee"""gggggggnnnnnggggggg333eeeee4	chr19:57346363-57346685(-)$1	322	241	280	15.7137
"""eeeee==========lll==========22eeeee]	chr10:21989570-21989903(+)$1	333	118	157	14.9472
$ggggggg[a[cccrrrrrrrrrccc]a]ggggggg444	chr2:42426043-42426292(+)$1	249	197	236	13.0552
!!iiiiiiiii"""cccooooooccc333iiiiiiiii3	chr6:149866116-149866384(-)$1	268	32	71	18.6248
b!!==========!!ddddllldddd==========bb]	chrY:2715561-2715845(+)$1	284	14	53	16.7448
dccc[=============nnnnn=============22c	chr5:73935919-73936194(-)$1	275	125	164	18.8257
b!!ggggggg!!a[cccooooooccc]a]ggggggg]bb	chr5:52313322-52313602(+)$1	280	151	190	15.4328
iiiiii!!aiiiiiiiiinnnnniiiiiiiii4444a22	chr12:133401755-133402069(-)$1	314	62	101	18.1714
eeeee[a[ggggggg[bbnnnnnbbggggggg]aeeeee	chr20:60634146-60634424(-)$1	278	112	151	13.9039
ggggggdddd"""eeeeellleeeee333dddd4444gg	chr2:32582787-32583075(+)$1	288	36	75	12.9525
hhhhhhhh[iiiiiiiiinnnnniiiiiiiii]hhhhhh	chr13:113870111-113870429(+)$1	318	201	240	14.0826
###ccc[bb!!ccc[aooooooa]ccc22bb]ccc4444	chr19:34874969-34875222(+)$1	253	33	72	13.7048
cc!!iiiiiiiii!!cccmmmmccciiiiiiiiiccc]d	chr11:65211589-65211914(+)$1	325	234	273	15.6605
cc"""ggggggg[eeeeennnnneeeeeggggggg333c	chr19:34874032-34874301(+)$1	269	206	245	16.0346
!!===========!!ddddllldddd===========22	chrY:2715489-2715752(+)$1	263	86	125	17.5978
[a[a[dddd####eeeeeooooooeeeeedddd]a]a]c	chr17:80226054-80226341(-)$1	287	93	132	12.4486
[eeeee[cccccc[ddddnnnnndddd]ccc]ccceeee	chr15:49521406-49521674(+)$1	268	25	64	14.8126
cc[iiiiiiiii!!ccc[aooooooa]ccciiiiiiiii	chr11:3013160-3013478(-)$1	318	41	80	15.9643
ccc!!a!!eeeee[ddddnnnnnddddeeeee333a22c	chr18:6393817-6394141(-)$1	324	85	124	15.1675
hhhhhhhhccc!!a[cccnnnnnccc]a22ccc]hhhhh	chr10:35667355-35667704(+)$1	349	95	134	13.9049
e==============!!ammmma22==============	chr2:75755613-75755875(-)$1	262	117	156	16.1982
FF:===========!!bbmmmmbb4444===========	chr17:80223882-80224163(-)$1	281	137	176	13.3808
==========[ddddccc===========lll=======	chr15:25295304-25295605(+)$1	301	53	92	13.1719
[=========="""fffffflllffffff]=========	chr1:20234805-20235177(+)$1	372	119	158	15.0091
!ffffff####ccc[cccnnnnnccc]ccc4444fffff	chr20:36145633-36145913(-)$1	280	118	157	15.4065
Eccc####iiiiiiiiiooooooiiiiiiiii333ccc:	chr14:39736370-39736642(+)$1	272	231	270	14.1608
=======bbdddd!!cccnnnnnccc22dddd22bb]==	chr1:27028459-27028772(+)$1	313	140	179	15.6645
b[ccc####ccc[a[ddddllldddda]cccccc]bb]b	chr7:104752932-104753200(-)$1	268	72	111	12.9765
fff####ffffff!!cccnnnnnccc22ffffff22fff	chr6:159048487-159048824(+)$1	337	114	153	14.0822
iii"""dddd"""eeeeennnnneeeee333dddd4444	chr15:25232162-25232402(+)$1	240	174	213	15.1551
[dddd####ccc!!ddddnnnnndddd22ccc4444ddd	chr6:168331848-168332063(+)$1	215	34	73	15.9399
f"""bb####ccc!!cccnnnnnccc]cccbb333ffff	chr13:113866141-113866390(+)$1	249	69	108	16.5662
f:dddd"""==========mmmm==========333ddd	chr11:70217461-70217693(+)$1	232	150	189	13.5583
===========[dddd[bbmmmmbb]dddd]========	chr14:39737229-39737476(+)$1	247	134	173	13.3959
c####ffffff"""ddddnnnnnddddffffff4444cc	chr1:236965210-236965457(+)$1	247	159	198	14.9393
"""eeeee!!ccc[ddddnnnnndddd22ccc22eeeee	chr6:89791452-89791724(+)$1	272	179	218	15.4896

#otherMatches

#Seq PSSM
AAUGUGGACACUUAGGGUACGAGGCCAAGAGUGGAGCAU	chr16:89513842-89514075(-)$1	233	51	90	14.5554
ACAGUGGCGGUUUUGGGCUCUGUUGGGAUUUGCCUCUGA	chr18:55798288-55798639(+)$1	351	248	287	12.8237
UGAGGCAAUGGAGAAGUUGAUUGGACUGGUuuuuguuuu	chr17:40628529-40628799(+)$1	270	44	83	18.6153
ucuuuggugacaauggcugcuaagguccuugugaucucu	chr6:45273914-45274178(-)$1	264	117	156	13.5346
GAUGAUAGUGACGUCCAUGAGAGGUGUGAUGUUGCUUCA	chr16:89511796-89512070(-)$1	274	209	248	17.0747
GGCUUUGGGGUCUAAGCCGCCGUGGUCAGAGGUCCCGAA	chr14:39736746-39737022(+)$1	276	53	92	21.3814
AUCCCUGAGAGUAGGGGACUUGAUCCAGUUUUUUGGGGA	chr2:102317669-102318075(+)$1	406	308	347	21.0645
GUCAGUAUCUGAGGAGGUAGGAUCUCAUACAGGUAUGAG	chr19:34883327-34883594(+)$1	267	154	193	14.4121
GAGCUGAGGAGUUAGGUUGAAUGCAGGUAGAUAGAGUUG	chr19:34877329-34877648(+)$1	319	59	98	15.4702
cacgguauuguggggcuguuucucagguucugagugugg	chr2:148720208-148720473(-)$1	265	109	148	15.1921
UACAUUCACGCUGUUGCUGGCGUGCAGGUCGGUGGUGUU	chr9:139996919-139997192(+)$1	273	161	200	12.9397
GGCUUUGGGGUCUAAGCCGCCGUGGUCAGAGGUCCCGAA	chr14:39736646-39736899(+)$1	253	153	192	21.3814
AGGUGGGGUUGGCAGCACUCAGGAGGCUGCCAACACAGA	chr21:46281185-46281581(-)$1	396	80	119	14.2651
UUGAGAGGUGUUGAGGAGGGAGACUCCUCACUUUCUCUG	chr19:57346363-57346685(-)$1	322	241	280	15.7137
uuuuugcauugauguuucuuggggauauugaccuguagu	chr10:21989570-21989903(+)$1	333	118	157	14.9472
GUUUCCAUGAAGCUAAAGGGUGAAGUGUGAUGGGGAAUA	chr2:42426043-42426292(+)$1	249	197	236	13.0552
GGGAAUGAGGGUUUUCUUAGCUUGGACUUUCUUUGUUUG	chr6:149866116-149866384(-)$1	268	32	71	18.6248
GAGUAAUGGGAACUAAGGCAGUGCCUGUUCCCAUUGUGA	chrY:2715561-2715845(+)$1	284	14	53	16.7448
CUGCAGGGGUGUGUUCGCGAGGGGUGAGCGUGCUCCGAG	chr5:73935919-73936194(-)$1	275	125	164	18.8257
caaccugcuggcggugcaugguagcaguacagcaggggc	chr5:52313322-52313602(+)$1	280	151	190	15.4328
GUGGGAGGCAGACGGGGAAUGAGUCUCUGUCUUCAAGGA	chr12:133401755-133402069(-)$1	314	62	101	18.1714
CCUGGUGUCCGCUGUUGGUCAGUCCGCGGUGGUCCCAGG	chr20:60634146-60634424(-)$1	278	112	151	13.9039
CCUCCGCGAGAGGUGAGGAGACCUUGGAGCUUGGCACCG	chr2:32582787-32583075(+)$1	288	36	75	12.9525
CCAUGGUCCCAUGUGGCUGUGGAGGUCGUGUGUGACUAU	chr13:113870111-113870429(+)$1	318	201	240	14.0826
AGACAGGUCGAGCUGGGUCUGACAAGUGAGGGCUGAAAA	chr19:34874969-34875222(+)$1	253	33	72	13.7048
CUGAUUCUGCUCAGAUUCAUCAGGAUGAGUAGAAGGCAc	chr11:65211589-65211914(+)$1	325	234	273	15.6605
AGAGGUGGUUCUGUCAGGUGAAGUCUGAGGAGCCAAAGC	chr19:34874032-34874301(+)$1	269	206	245	16.0346
GAGUAAUGGGAACUAAGGCAGUGCCUGUUCCCAUUGUGA	chrY:2715489-2715752(+)$1	263	86	125	17.5978
GAGGAUCUGACUUUCAGCAGCAUGGCUGGUAGAGUGUGG	chr17:80226054-80226341(-)$1	287	93	132	12.4486
aguaucacuggucucugauuuccucagugacuuaggaua	chr15:49521406-49521674(+)$1	268	25	64	14.8126
cggccgggcccggacgggcggguggggccgcggguccgg	chr11:3013160-3013478(-)$1	318	41	80	15.9643
ugugauggugucuagggaaagaguuccagacagaaggag	chr18:6393817-6394141(-)$1	324	85	124	15.1675
GCUUUUUUGGCUAGGGUGGGGUGUAUGUGUGUUGAGAAA	chr10:35667355-35667704(+)$1	349	95	134	13.9049
cucuucuuggguggugccugcagagaccaccugggggga	chr2:75755613-75755875(-)$1	262	117	156	16.1982
AGGCUGUCUGGGGCGGGCAAGUGCAGGGGCCUUGGGCAG	chr17:80223882-80224163(-)$1	281	137	176	13.3808
AAGGUGAUGUGUCCUGUCUGCUUGGUCCUUGUAGGAUCA	chr15:25295304-25295605(+)$1	301	53	92	13.1719
GACUGUUAAUUAGGCCUGGCCUUGUUGGGAAGUUGAUAG	chr1:20234805-20235177(+)$1	372	119	158	15.0091
GUCCAUUUGGGUCGUGGUGUUGGAUUUCGGAGUUGGUGG	chr20:36145633-36145913(-)$1	280	118	157	15.4065
CGUUUAUUGUGGCCCCGACAGGCCGGGGUUACUGUGGCG	chr14:39736370-39736642(+)$1	272	231	270	14.1608
UCUAGGUCUGGUUUGGGCAGUUGGUUGUAAUCUGAGUGC	chr1:27028459-27028772(+)$1	313	140	179	15.6645
UGUACAAGGUGCGGUCCUGGAGCAGGUGGUGGUGGAGGA	chr7:104752932-104753200(-)$1	268	72	111	12.9765
cugaaagcugugggguggcugccccaggccgcagaacag	chr6:159048487-159048824(+)$1	337	114	153	14.0822
UUGGAAAUAAGGAAAACUUGCAUGGUUUGAAUUGUGGAA	chr15:25232162-25232402(+)$1	240	174	213	15.1551
gggaaguaugaugaaucucaagaagaugaaucuugauuc	chr6:168331848-168332063(+)$1	215	34	73	15.9399
gcuccgguuccacuccgccaccagcgugugcgucucucc	chr13:113866141-113866390(+)$1	249	69	108	16.5662
GCGUGUUCUACAUUCCAUUGUUGGGUGGAGUGUUCuaua	chr11:70217461-70217693(+)$1	232	150	189	13.5583
AAGUGUUUCUAGGUAUCUUUGUUGACAUGUGUAGGGGCA	chr14:39737229-39737476(+)$1	247	134	173	13.3959
CGAGGAAGGUGGGACCAUUGUGCAUGGCAUUUUAGAGGC	chr1:236965210-236965457(+)$1	247	159	198	14.9393
AGUCGGUGAAACGCGGAGACGGCCUCUAACGUCCCGCCG	chr6:89791452-89791724(+)$1	272	179	218	15.4896

#DB
(((((...(((((..(((.....)))..)))))..))))	chr16:89513842-89514075(-)$1	1	51	90	14.5554
.(((.(((((.(((.(((...))).))).))))).))).	chr18:55798288-55798639(+)$1	1	248	287	12.8237
((((((((.(((..((((.....))))..))))))))))	chr17:40628529-40628799(+)$1	1	44	83	18.6153
(....(((.((((.((((.....)))).)))).)))...	chr6:45273914-45274178(-)$1	1	117	156	13.5346
((((..((((((((((((.....))).)))))))))...	chr16:89511796-89512070(-)$1	1	209	248	17.0747
(((((((((((((..(((.....)))...))))))))))	chr14:39736746-39737022(+)$1	1	53	92	21.3814
(((((((((((....(((.....)))...))))))))))	chr2:102317669-102318075(+)$1	1	308	347	21.0645
....(((((((..(((((...)))))...)))))))..)	chr19:34883327-34883594(+)$1	1	154	193	14.4121
(((((((...(((.(.(((....))).).)))....)))	chr19:34877329-34877648(+)$1	1	59	98	15.4702
(((..((((..(((.(((.....))).)))..))))...	chr2:148720208-148720473(-)$1	1	109	148	15.1921
.((((.(((....((((......))))....))))))).	chr9:139996919-139997192(+)$1	1	161	200	12.9397
(((((((((((((..(((.....)))...))))))))))	chr14:39736646-39736899(+)$1	1	153	192	21.3814
.(((..((((((((((.((....))))))))))).)...	chr21:46281185-46281581(-)$1	1	80	119	14.2651
...(((((...(((((((.....)))))))...))))).	chr19:57346363-57346685(-)$1	1	241	280	15.7137
...(((((((((((((((...))))))))))..))))).	chr10:21989570-21989903(+)$1	1	118	157	14.9472
.(((((((.(.(((.........))).).)))))))...	chr2:42426043-42426292(+)$1	1	197	236	13.0552
..(((((((((...(((......)))...))))))))).	chr6:149866116-149866384(-)$1	1	32	71	18.6248
(..((((((((((..((((...)))))))))))))))).	chrY:2715561-2715845(+)$1	1	14	53	16.7448
)(((.(((((((((((((.....)))))))))))))..)	chr5:73935919-73936194(-)$1	1	125	164	18.8257
(..(((((((..(.(((......))).).))))))).))	chr5:52313322-52313602(+)$1	1	151	190	15.4328
((((((..((((((((((.....)))))))))....)..	chr12:133401755-133402069(-)$1	1	62	101	18.1714
(((((.(.(((((((.((.....))))))))).))))))	chr20:60634146-60634424(-)$1	1	112	151	13.9039
((((((((((...(((((...)))))...))))....))	chr2:32582787-32583075(+)$1	1	36	75	12.9525
((((((((.(((((((((.....))))))))).))))))	chr13:113870111-113870429(+)$1	1	201	240	14.0826
...(((.((..(((.(......).)))..)).)))....	chr19:34874969-34875222(+)$1	1	33	72	13.7048
((..(((((((((..(((....))))))))))))))).)	chr11:65211589-65211914(+)$1	1	234	273	15.6605
((...(((((((.(((((.....))))))))))))...)	chr19:34874032-34874301(+)$1	1	206	245	16.0346
..(((((((((((..((((...)))))))))))))))..	chrY:2715489-2715752(+)$1	1	86	125	17.5978
.(.(.((((....(((((......))))))))).).).)	chr17:80226054-80226341(-)$1	1	93	132	12.4486
.(((((.((((((.((((.....)))).))).)))))))	chr15:49521406-49521674(+)$1	1	25	64	14.8126
((.(((((((((..(((.(......).))))))))))))	chr11:3013160-3013478(-)$1	1	41	80	15.9643
(((..(..(((((.((((.....)))))))))...)..)	chr18:6393817-6394141(-)$1	1	85	124	15.1675
(((((((((((..(.(((.....))).)..))).)))))	chr10:35667355-35667704(+)$1	1	95	134	13.9049
)((((((((((((((..(....)..))))))))))))))	chr2:75755613-75755875(-)$1	1	117	156	16.1982
((.(((((((((((..((....))....)))))))))))	chr17:80223882-80224163(-)$1	1	137	176	13.3808
((((((((((.((((((((((((((((((...)))))))	chr15:25295304-25295605(+)$1	1	53	92	13.1719
.((((((((((...((((((...)))))).)))))))))	chr1:20234805-20235177(+)$1	1	119	158	15.0091
.((((((....(((.(((.....))).)))....)))))	chr20:36145633-36145913(-)$1	1	118	157	15.4065
)(((....(((((((((......)))))))))...))).	chr14:39736370-39736642(+)$1	1	231	270	14.1608
(((((((((((((..(((.....)))..))))..)).))	chr1:27028459-27028772(+)$1	1	140	179	15.6645
(.(((....(((.(.((((...))))).)))))).)).)	chr7:104752932-104753200(-)$1	1	72	111	12.9765
(((....((((((..(((.....)))..))))))..)))	chr6:159048487-159048824(+)$1	1	114	153	14.0822
(((...((((...(((((.....)))))...))))....	chr15:25232162-25232402(+)$1	1	174	213	15.1551
.((((....(((..((((.....))))..)))....)))	chr6:168331848-168332063(+)$1	1	34	73	15.9399
(...((....(((..(((.....))).)))))...))))	chr13:113866141-113866390(+)$1	1	69	108	16.5662
).((((...((((((((((....))))))))))...)))	chr11:70217461-70217693(+)$1	1	150	189	13.5583
(((((((((((.((((.((....)).)))).))))))))	chr14:39737229-39737476(+)$1	1	134	173	13.3959
(....((((((...((((.....))))))))))....))	chr1:236965210-236965457(+)$1	1	159	198	14.9393
...(((((..(((.((((.....))))..)))..)))))	chr6:89791452-89791724(+)$1	1	179	218	15.4896

#PSSM
[ : 0.14	= : 0.14	c : 0.10	e : 0.08	b : 0.08	f : 0.08	i : 0.06	" : 0.06	! : 0.06	# : 0.04	h : 0.04	$ : 0.02	d : 0.02	g : 0.02	F : 0.02	E : 0.02	
= : 0.18	c : 0.16	e : 0.08	# : 0.08	" : 0.08	! : 0.08	i : 0.06	f : 0.06	d : 0.04	g : 0.04	h : 0.04	a : 0.02	F : 0.02	[ : 0.02	: : 0.02	
= : 0.20	c : 0.12	" : 0.10	e : 0.08	# : 0.08	i : 0.08	f : 0.06	d : 0.06	! : 0.06	g : 0.04	h : 0.04	[ : 0.04	: : 0.02	
= : 0.24	e : 0.14	c : 0.12	# : 0.08	i : 0.08	! : 0.06	d : 0.06	g : 0.06	" : 0.06	h : 0.04	a : 0.02	f : 0.02	
= : 0.24	e : 0.12	i : 0.10	# : 0.08	! : 0.08	g : 0.08	[ : 0.06	d : 0.06	h : 0.04	c : 0.04	" : 0.04	f : 0.02	b : 0.02	
= : 0.26	e : 0.10	g : 0.10	i : 0.10	# : 0.08	d : 0.06	" : 0.04	c : 0.04	! : 0.04	[ : 0.04	h : 0.04	f : 0.04	a : 0.02	b : 0.02	
= : 0.26	i : 0.10	# : 0.10	e : 0.08	g : 0.08	d : 0.08	" : 0.04	c : 0.04	a : 0.04	! : 0.04	h : 0.04	[ : 0.04	f : 0.04	
= : 0.24	i : 0.10	# : 0.10	e : 0.08	g : 0.08	d : 0.08	" : 0.06	c : 0.06	! : 0.04	h : 0.04	b : 0.04	f : 0.04	[ : 0.02	
= : 0.24	i : 0.12	[ : 0.08	g : 0.08	d : 0.08	# : 0.08	e : 0.06	" : 0.06	c : 0.06	b : 0.04	f : 0.04	a : 0.02	! : 0.02	
= : 0.26	i : 0.16	c : 0.10	d : 0.08	g : 0.08	# : 0.08	e : 0.06	! : 0.06	" : 0.04	f : 0.04	a : 0.02	
= : 0.24	c : 0.16	i : 0.16	[ : 0.06	g : 0.06	! : 0.06	# : 0.06	" : 0.06	e : 0.04	d : 0.04	f : 0.04	
c : 0.24	= : 0.18	i : 0.14	" : 0.10	d : 0.06	# : 0.06	! : 0.06	g : 0.06	e : 0.04	f : 0.02	[ : 0.02	
c : 0.18	= : 0.18	i : 0.12	! : 0.10	" : 0.10	d : 0.08	# : 0.06	e : 0.04	g : 0.04	[ : 0.04	a : 0.02	f : 0.02	
! : 0.24	[ : 0.12	c : 0.10	i : 0.10	e : 0.10	= : 0.10	d : 0.06	" : 0.06	g : 0.04	a : 0.04	# : 0.02	
! : 0.20	d : 0.20	[ : 0.12	i : 0.10	e : 0.10	= : 0.08	c : 0.06	g : 0.04	# : 0.02	a : 0.02	r : 0.02	f : 0.02	
c : 0.34	d : 0.24	e : 0.10	i : 0.08	= : 0.06	[ : 0.04	! : 0.04	g : 0.02	r : 0.02	a : 0.02	f : 0.02	
c : 0.36	d : 0.22	e : 0.10	= : 0.06	i : 0.06	[ : 0.04	b : 0.04	g : 0.02	r : 0.02	o : 0.02	! : 0.02	f : 0.02	
c : 0.30	d : 0.20	e : 0.10	o : 0.10	b : 0.08	= : 0.06	i : 0.04	g : 0.02	r : 0.02	[ : 0.02	a : 0.02	f : 0.02	
n : 0.51	o : 0.12	l : 0.08	d : 0.06	m : 0.06	b : 0.04	= : 0.04	c : 0.02	r : 0.02	a : 0.02	f : 0.02	
n : 0.51	l : 0.14	m : 0.14	o : 0.14	r : 0.02	= : 0.02	f : 0.02	
n : 0.51	l : 0.16	m : 0.14	o : 0.14	r : 0.02	= : 0.02	
n : 0.51	m : 0.14	o : 0.14	l : 0.08	e : 0.04	= : 0.04	c : 0.02	r : 0.02	
n : 0.51	o : 0.12	m : 0.08	d : 0.06	c : 0.04	e : 0.04	= : 0.04	a : 0.04	r : 0.02	b : 0.02	l : 0.02	
c : 0.34	d : 0.22	e : 0.08	b : 0.08	= : 0.08	i : 0.06	o : 0.04	g : 0.02	] : 0.02	2 : 0.02	f : 0.02	
c : 0.34	d : 0.22	e : 0.10	= : 0.08	b : 0.06	i : 0.06	] : 0.02	g : 0.02	o : 0.02	2 : 0.02	4 : 0.02	f : 0.02	
c : 0.34	d : 0.22	e : 0.10	i : 0.10	= : 0.10	g : 0.04	a : 0.02	4 : 0.02	f : 0.02	] : 0.02	
d : 0.18	] : 0.18	= : 0.14	3 : 0.12	i : 0.10	2 : 0.06	e : 0.06	c : 0.04	g : 0.04	4 : 0.02	f : 0.02	a : 0.02	
2 : 0.14	= : 0.14	i : 0.12	3 : 0.12	c : 0.10	a : 0.08	e : 0.08	] : 0.06	4 : 0.04	g : 0.04	f : 0.04	d : 0.02	
= : 0.16	3 : 0.14	i : 0.12	c : 0.12	2 : 0.10	] : 0.08	e : 0.06	d : 0.06	g : 0.06	f : 0.06	4 : 0.02	
c : 0.20	= : 0.20	i : 0.14	g : 0.12	d : 0.10	e : 0.06	f : 0.04	4 : 0.02	b : 0.02	2 : 0.02	l : 0.02	] : 0.02	3 : 0.02	
= : 0.22	i : 0.16	c : 0.14	g : 0.10	d : 0.08	e : 0.06	4 : 0.04	3 : 0.04	b : 0.04	f : 0.04	2 : 0.02	l : 0.02	] : 0.02	
= : 0.22	i : 0.16	c : 0.14	d : 0.10	g : 0.10	e : 0.06	2 : 0.04	] : 0.04	f : 0.04	3 : 0.02	l : 0.02	4 : 0.02	b : 0.02	
= : 0.26	i : 0.10	c : 0.10	g : 0.08	4 : 0.08	d : 0.08	3 : 0.08	] : 0.06	2 : 0.06	e : 0.04	f : 0.04	
= : 0.24	4 : 0.12	c : 0.10	i : 0.10	g : 0.08	3 : 0.08	2 : 0.06	e : 0.06	d : 0.04	] : 0.04	a : 0.02	h : 0.02	f : 0.02	
= : 0.24	4 : 0.10	c : 0.08	g : 0.08	e : 0.08	3 : 0.08	] : 0.06	i : 0.06	d : 0.06	2 : 0.04	h : 0.04	a : 0.02	f : 0.02	b : 0.02	
= : 0.24	4 : 0.14	e : 0.12	c : 0.08	i : 0.06	g : 0.06	d : 0.04	a : 0.04	h : 0.04	3 : 0.04	f : 0.04	b : 0.04	] : 0.02	2 : 0.02	
= : 0.20	e : 0.12	4 : 0.12	c : 0.06	2 : 0.06	i : 0.06	d : 0.06	f : 0.06	3 : 0.04	b : 0.04	] : 0.04	a : 0.04	h : 0.04	6 : 0.02	0 : 0.02	
= : 0.20	e : 0.12	2 : 0.10	4 : 0.08	c : 0.06	i : 0.06	d : 0.06	] : 0.06	f : 0.06	3 : 0.04	b : 0.04	h : 0.04	6 : 0.02	0 : 0.02	g : 0.02	
= : 0.22	4 : 0.10	c : 0.10	e : 0.08	] : 0.08	d : 0.06	f : 0.06	i : 0.04	3 : 0.04	b : 0.04	2 : 0.04	h : 0.04	6 : 0.02	0 : 0.02	g : 0.02	: : 0.02	

#score	755.5575702788452
#seq	49
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_CDS_m1_run2.txt

#BEAR
gggggccc[dddd[cccooooooccc]dddd]ccceeee	chr16:22326389-22326632(+)$1	243	187	226	15.5380
c[ccc!!a[ddddcccqqqqqqqqccc]dddd]a22ccc	chr14:56114646-56114935(+)$1	289	167	206	10.2563
bb]ccc:::ccc!!cccooooooccc]cccdddd[ccco	chr19:803953-804190(+)$1	237	134	173	11.4462
bb[eeeee[ccc[bb!!ccclllccc22bb]ccc333ee	chr9:107651284-107651541(-)$1	257	183	222	11.3826
###dddd!!eeeeecccooooooccc22eeeeedddddd	chr20:8608851-8609119(+)$1	268	192	231	16.4692
&&&&&============oooooo============]eee	chr3:186503887-186504118(+)$1	231	61	100	13.1284
bb[ccc[bb[eeeee[bbnnnnnbb333eeeeebb]ccc	chr20:60898565-60898814(-)$1	249	145	184	11.9443
bb!!eeeee[eeeeeooooooeeeee22eeeee22bbdd	chr4:3134459-3134738(+)$1	279	35	74	12.0414
::=========="""bboooooobb333==========:	chr11:47765518-47765815(-)$1	297	26	65	14.8785
cc!!ggggggg[ddddoooooodddd22ggggggg333c	chr5:179050016-179050236(-)$1	220	68	107	14.4910
==!!dddd[eeeeeooooooeeeeedddd333=======	chr1:23637253-23637578(-)$1	325	86	125	11.2769
hhhhhhhh[eeeee[bboooooobb22eeeee4444hhh	chr15:93499588-93499860(+)$1	272	224	263	13.6162
c!!bb[===========oooooo===========bb22c	chr17:74328347-74328618(-)$1	271	108	147	14.6672
b!!ccc!!dddd"""cccoooooocccdddd22ccc333	chr1:23636938-23637197(-)$1	259	61	100	15.2973
f"""bbdddd"""ddddoooooodddd4444dddd]bb2	chr20:40101995-40102255(-)$1	260	166	205	12.6842
f::ccc[gggggggcccooooooccc]ggggggg]ccc:	chr17:8438608-8438875(-)$1	267	157	196	13.0220
eeeee[ffffff!!cccooooooccc22ffffff]eeee	chr7:26236328-26236579(-)$1	251	143	182	14.2491
ee"""ddddeeeee[bboooooobb22eeeee]dddd]e	chr17:25637048-25637299(+)$1	251	199	238	14.5423
gg!!ccc####ddddoooooodddd333ccc22gggggg	chr17:62498226-62498442(-)$1	216	22	61	13.7796
a!!iiiiiiiii!!fffffflllffffffiiiiiiiii2	chr16:18847579-18847876(-)$1	297	216	255	10.6573
444ffffffdddd[cccooooooccc22ddddbb[a!!d	chr14:39646557-39646775(+)$1	218	50	89	13.1229
eeeeeccc[eeeee!!bbnnnnnbb22eeeee22ccc]e	chr19:57325973-57326227(-)$1	254	23	62	11.9724
eeeeffffff[eeeeebboooooobb]eeeee]ffffff	chr12:116675176-116675498(-)$1	322	95	134	11.2998
iiii::ccc[gggggggooooooggggggg]cccbb[cc	chr2:159522885-159523179(+)$1	294	100	139	11.3445
ddd[eeeeeeeeee[bboooooobbeeeee]eeeee444	chr11:62400092-62400316(-)$1	224	146	185	13.1146
ffff!!ffffff[a[bboooooobb]affffff22ffff	chr20:57566842-57567099(+)$1	257	67	106	12.0218
[a[dddd!!eeeee[eeeeeooooooeeeee]eeeee]d	chrX:53432602-53432899(-)$1	297	198	237	10.3950
dddd[ccc[dddd[bbbboooooobb]bb]ddddccc22	chr2:54856516-54856751(+)$1	235	85	124	11.9917
==========[a!!cccooooooccc]a==========]	chr2:85553896-85554168(-)$1	272	179	218	17.3325
cc$$$$$a[eeeee[cccnnnnnccc]eeeee]a22ccc	chr17:56083222-56083434(-)$1	212	127	166	12.5532
ccchhhhhhhh!!a[bboooooobb]a4444hhhhhhhh	chr19:56179773-56180011(+)$1	238	113	152	12.3403
gggggg!!dddd!!cccoooooocccdddd]gggggggf	chr14:103807199-103807473(+)$1	274	75	114	15.2626
b::ccc[eeeee"""ddddllldddd22eeeee]cccdd	chr20:17600192-17600439(-)$1	247	176	215	10.3535
dd!!ggggggg"""cccnnnnnccc333gggggggdddd	chr8:124381960-124382213(-)$1	253	143	182	13.5344
==========ddddcccooooooccc>>>>>>>>>>>>>	chr5:145849006-145849328(+)$1	322	257	296	13.2112
[bb[dddd[eeeeeooooooeeeee333ddddbbdddd]	chr2:136742873-136743213(-)$1	340	15	54	10.8595
###dddd####ccc[aooooooa]ccc]ddddccciiii	chr15:30927186-30927513(+)$1	327	66	105	14.9515
$$$ccc"""ccc!!bblllbb22ccc22ccc]dddd]cc	chr9:117026534-117026738(+)$1	204	86	125	10.5512
!a[eeeee"""bb!!bboooooobb333bb333eeeeea	chr12:100904546-100904854(+)$1	308	55	94	14.8929
c!!ddddccc[ccc!!cccaooooooa]ccc22ccc]cc	chr9:14848563-14848778(-)$1	215	11	50	11.8481
ff[dddd!!ccc[bboooooobb]ccc22dddd]fffff	chr18:697138-697412(-)$1	274	28	67	11.5497
gggggg!!dddd"""cccnnnnnccc333dddd333ggg	chr14:56079066-56079380(+)$1	314	214	253	14.6435
eee[cccdddd"""cccooooooccc333dddd]cccee	chr6:26055960-26056203(-)$1	243	120	159	16.3608
i!!dddd!!ddddxxxxxxxxxxxxxxxdddd22dddd2	chr2:203164869-203165111(+)$1	242	192	231	10.2441
=="""ccc[ccc"""cccmmmmccc333cccccc]====	chr16:2814766-2814993(+)$1	227	105	144	14.0689
''''ccc"""ccca!!cccmmmmccc22a]ccc4444cc	chr14:50246903-50247135(+)$1	232	21	60	11.0690
fff[ccc[ddddcccrrrrrrrrrccc]dddd]cccfff	chr1:109773452-109773742(+)$1	290	28	67	11.2839
####eeeeebba!!cccooooooccc22a]bb]eeeee2	chr2:232577051-232577304(+)$1	253	180	219	15.2488
f"""ccc[bb[bba[cccnnnnnccc]a]bb333bb]cc	chr11:68369242-68369531(+)$1	289	140	179	12.0236
####ccc!!gggggggooooooggggggg]ccc333ddd	chr6:2115950-2116214(-)$1	264	68	107	14.5800
!!eeeee"""ccc[aooooooa]ccc333eeeee22bb]	chr16:4910768-4911182(+)$1	414	302	341	14.1391
ddcccccceeeee[ddddnnnnndddd]eeeee]ccc22	chr16:67979836-67980061(-)$1	225	73	112	10.8855

#otherMatches

#Seq PSSM
AAGGGUCAUGGUGUGGCCUCCGUGUCUCACCUUGAACUU	chr16:22326389-22326632(+)$1	243	187	226	15.5380
CUAAAGAAGAGGAGCUGAAUGUAAAGCAUUUUGUAGUUU	chr14:56114646-56114935(+)$1	289	167	206	10.2563
CCCCUCUAGAGUGAUCCACAUCCGGAAGCUCCCCAUCGA	chr19:803953-804190(+)$1	237	134	173	11.4462
AGACUCACCAAUGGCAGGGAAAAUCCAGGCAAUUAACGU	chr9:107651284-107651541(-)$1	257	183	222	11.3826
UGAAUCUCGUGGCUUUCCAAGAAGAAGUGGCCAAGGUAU	chr20:8608851-8609119(+)$1	268	192	231	16.4692
ACAGCUCCAAAAUGGAUCAAAAUGUUUGUUUUGGAUGAA	chr3:186503887-186504118(+)$1	231	61	100	13.1284
CGACUGCAGCGGCAACGGUGACCCCAACUUGCUCUUCAG	chr20:60898565-60898814(-)$1	249	145	184	11.9443
GGUUUAAGUUUAGAUGAUGAUGUUUGUUGCUUGUUCUUC	chr4:3134459-3134738(+)$1	279	35	74	12.0414
UCUUGUUUAUUAUUCUGAUUAUACAUAUUAAUAAGCAGU	chr11:47765518-47765815(-)$1	297	26	65	14.8785
CAGUUUGUUUCGACGCCGGACCGCGUAAGAGACGAUGAU	chr5:179050016-179050236(-)$1	220	68	107	14.4910
GGGGGGAGAGGUGGAUAUGGCUACCCUCCAGAUUACUAC	chr1:23637253-23637578(-)$1	325	86	125	11.2769
CGGGGACCCCUCUUCAGAAUUCCCUCAAAGAGCUCUGGU	chr15:93499588-93499860(+)$1	272	224	263	13.6162
GAAUACAGCUGUGAUGGAGUUGCUCAUCAUGGCUUACGC	chr17:74328347-74328618(-)$1	271	108	147	14.6672
CAAGAGAAAGGCAGAUGGGUACAACCAGCCUGAUUCCAA	chr1:23636938-23637197(-)$1	259	61	100	15.2973
GUAAGCCAGAUUCAGACCGCUUUGUCUUUCUUCUGUGCA	chr20:40101995-40102255(-)$1	260	166	205	12.6842
GCUUUGGAAAGAUGGUAAGAAAGUGCUUAUCUUUGUAAU	chr17:8438608-8438875(-)$1	267	157	196	13.0220
AAAAUCGUAUGUAAGUGUCUAACCACAAAUGUACUGUUU	chr7:26236328-26236579(-)$1	251	143	182	14.2491
UUCUUAAGCCUUAAAGCCUUUCUGCAGUUAAGAGUUUUA	chr17:25637048-25637299(+)$1	251	199	238	14.5423
CUGUGACCAAAAGUGGUCAAGCACUGGAGUCUGAGGUUU	chr17:62498226-62498442(-)$1	216	22	61	13.7796
AUUCACAUGUGAAACUAUGAGUUUUAUAGUCAUGUGUGU	chr16:18847579-18847876(-)$1	297	216	255	10.6573
UAUGACAGGCUGGGCGGGGAGCGUCGGACCAGAAGAGAA	chr14:39646557-39646775(+)$1	218	50	89	13.1229
CCUCUUGCCCAUGAAGCCACGGAGGAAUCGUGCUGCAGA	chr19:57325973-57326227(-)$1	254	23	62	11.9724
CAUCCGCUGUCUGCAAGCUAACCUGCUUUGUGUAUGGCG	chr12:116675176-116675498(-)$1	322	95	134	11.2998
UUCUGAGAAUGGAUAACGAUAGAGUUGUUUCUUCCGUGG	chr2:159522885-159523179(+)$1	294	100	139	11.3445
AGCUGUACAACCCAAUGGCCUUGUAUGGGUCUGUGCCUG	chr11:62400092-62400316(-)$1	224	146	185	13.1146
UCACCAGCUUGUGUGUGUGUUUUCAGAACAAGCGAGUGA	chr20:57566842-57567099(+)$1	257	67	106	12.0218
UGAGGCUUGUUGGGGAUUGGGUCAGGCCAGUGUUCAAGG	chrX:53432602-53432899(-)$1	297	198	237	10.3950
UUCCACACAGUCUCUGGUCAAGAAACACAAGGACGUGGC	chr2:54856516-54856751(+)$1	235	85	124	11.9917
UUUCUCCUCAUGCUUUCAAAACCGAAUCUGGGGAGGAAA	chr2:85553896-85554168(-)$1	272	179	218	17.3325
AUUUAAAGGAUCACAUGCGUGAAGCAGGUGAUGUAUGUU	chr17:56083222-56083434(-)$1	212	127	166	12.5532
GUGGUCCCCGACUCUGCCCACAAGCUGUUCAUCGGGGGC	chr19:56179773-56180011(+)$1	238	113	152	12.3403
UGAAUAAAAUCAUUCCUCUUAACAGGUGGUGUAUUCGAA	chr14:103807199-103807473(+)$1	274	75	114	15.2626
CAAGGAGUGCAGCCCCUGCCCAGCAGAUCUGCGGUCCUC	chr20:17600192-17600439(-)$1	247	176	215	10.3535
CCAUUGGAAAGUAAGUGCUAUACAUACUCUUUCCAGGAG	chr8:124381960-124382213(-)$1	253	143	182	13.5344
AUUAGAAUCAACCUGGGAAAAACCCCAAGAACUAAAGGA	chr5:145849006-145849328(+)$1	322	257	296	13.2112
CGAUCUUUCUGGAGCCGCACCUCCACGCGGAGUCCGAGC	chr2:136742873-136743213(-)$1	340	15	54	10.8595
UCCAUCUAAUAAAGCGUUUAUUCACUUAAGAUCCAGUGA	chr15:30927186-30927513(+)$1	327	66	105	14.9515
UUUUCCUAUUCCAGGGCCCCCGAGGACCGGACGGACCAG	chr9:117026534-117026738(+)$1	204	86	125	10.5512
AGUGGAACCAUACUCGCAAUACAGCAAUGUUCAGUUUCC	chr12:100904546-100904854(+)$1	308	55	94	14.8929
AAUUGGAGGUAUACGACUUCUUCUUUGAAAGGAGUGCAC	chr9:14848563-14848778(-)$1	215	11	50	11.8481
UAAACAAGAGUUCAAUCCUUUUUAAAUAGUUGUCUGUGC	chr18:697138-697412(-)$1	274	28	67	11.5497
AUGGAAGCGGUAUUGUAAUCUAUUUAAUCUAUUUAAUUU	chr14:56079066-56079380(+)$1	314	214	253	14.6435
GCUGUGAAGCCCAAGGCCGCUAAGCCCAAGGUUGUCAAG	chr6:26055960-26056203(-)$1	243	120	159	16.3608
AGCCAAAAAAGCCAAGAUUAAAGUUAAAGGUUAGUUUGA	chr2:203164869-203165111(+)$1	242	192	231	10.2441
GAGAUGGGUCUGGGACUCCCUCGAGGCACAGCCUGUCUG	chr16:2814766-2814993(+)$1	227	105	144	14.0689
UUUCAGAAUUCCACAAGGCAUAUGCCCAGUUGGUCGAUC	chr14:50246903-50247135(+)$1	232	21	60	11.0690
UCUUGCUCUGUUUCCUUAGGAUGUGGACAACAAAGUAGA	chr1:109773452-109773742(+)$1	290	28	67	11.2839
UUCUGGCUUGAGAAGAAGGGGGGUUUGGCAUCUGGGUCU	chr2:232577051-232577304(+)$1	253	180	219	15.2488
GAACCCAUGGACCCUCUGACUCCCAGUGCGGCUGCCCUG	chr11:68369242-68369531(+)$1	289	140	179	12.0236
UCUAUCUAAUGGGAUGUUUUUGUAUCCUGAAGACAUGAA	chr6:2115950-2116214(-)$1	264	68	107	14.5800
CCCCUGGAGAAGCGCGUUAAGGAGCUGGCUCAGGUAUGG	chr16:4910768-4911182(+)$1	414	302	341	14.1391
CAGGUCUGGAGGAAGUGCCGGAUGCGCAUCUUCACAGUG	chr16:67979836-67980061(-)$1	225	73	112	10.8855

#DB
)))))(((.((((.(((......))).)))).)))((((	chr16:22326389-22326632(+)$1	1	187	226	15.5380
(.(((..(.(((((((........))).)))).)..)))	chr14:56114646-56114935(+)$1	1	167	206	10.2563
)).)))...(((..(((......))).)))((((.(((.	chr19:803953-804190(+)$1	1	134	173	11.4462
((.(((((.(((.((..(((...)))..)).)))...))	chr9:107651284-107651541(-)$1	1	183	222	11.3826
...((((..((((((((......)))..)))))))))))	chr20:8608851-8609119(+)$1	1	192	231	16.4692
.....((((((((((((......)))))))))))).)))	chr3:186503887-186504118(+)$1	1	61	100	13.1284
((.(((.((.(((((.((.....))...))))))).)))	chr20:60898565-60898814(-)$1	1	145	184	11.9443
((..(((((.(((((......)))))..)))))..))((	chr4:3134459-3134738(+)$1	1	35	74	12.0414
..((((((((((...((......))...)))))))))).	chr11:47765518-47765815(-)$1	1	26	65	14.8785
((..(((((((.((((......))))..)))))))...)	chr5:179050016-179050236(-)$1	1	68	107	14.4910
((..((((.(((((......)))))))))...)))))))	chr1:23637253-23637578(-)$1	1	86	125	11.2769
((((((((.(((((.((......))..)))))....)))	chr15:93499588-93499860(+)$1	1	224	263	13.6162
(..((.(((((((((((......)))))))))))))..)	chr17:74328347-74328618(-)$1	1	108	147	14.6672
(..(((..((((...(((......)))))))..)))...	chr1:23636938-23637197(-)$1	1	61	100	15.2973
(...((((((...((((......))))....)))).)).	chr20:40101995-40102255(-)$1	1	166	205	12.6842
)..(((.((((((((((......))).))))))).))).	chr17:8438608-8438875(-)$1	1	157	196	13.0220
(((((.((((((..(((......)))..)))))).))))	chr7:26236328-26236579(-)$1	1	143	182	14.2491
((...(((((((((.((......))..))))).)))).)	chr17:25637048-25637299(+)$1	1	199	238	14.5423
((..(((....((((......))))...)))..))))))	chr17:62498226-62498442(-)$1	1	22	61	13.7796
(..(((((((((..((((((...))))))))))))))).	chr16:18847579-18847876(-)$1	1	216	255	10.6573
...))))))((((.(((......)))..))))((.(..(	chr14:39646557-39646775(+)$1	1	50	89	13.1229
((((((((.(((((..((.....))..)))))..))).)	chr19:57325973-57326227(-)$1	1	23	62	11.9724
))))((((((.(((((((......)).))))).))))))	chr12:116675176-116675498(-)$1	1	95	134	11.2998
))))..(((.(((((((......))))))).)))((.((	chr2:159522885-159523179(+)$1	1	100	139	11.3445
(((.((((((((((.((......))))))).)))))...	chr11:62400092-62400316(-)$1	1	146	185	13.1146
((((..((((((.(.((......)).)))))))..))))	chr20:57566842-57567099(+)$1	1	67	106	12.0218
.(.((((..(((((.(((((......))))).))))).)	chrX:53432602-53432899(-)$1	1	198	237	10.3950
((((.(((.((((.((((......)).)).)))))))..	chr2:54856516-54856751(+)$1	1	85	124	11.9917
((((((((((.(..(((......))).))))))))))).	chr2:85553896-85554168(-)$1	1	179	218	17.3325
((.....(.(((((.(((.....))).))))).)..)))	chr17:56083222-56083434(-)$1	1	127	166	12.5532
(((((((((((..(.((......)).)....))))))))	chr19:56179773-56180011(+)$1	1	113	152	12.3403
((((((..((((..(((......))))))).))))))))	chr14:103807199-103807473(+)$1	1	75	114	15.2626
)..(((.(((((...((((...))))..))))).)))((	chr20:17600192-17600439(-)$1	1	176	215	10.3535
((..(((((((...(((.....)))...)))))))))))	chr8:124381960-124382213(-)$1	1	143	182	13.5344
(((((((((((((((((......))).............	chr5:145849006-145849328(+)$1	1	257	296	13.2112
.((.((((.(((((......)))))...)))))))))).	chr2:136742873-136743213(-)$1	1	15	54	10.8595
...((((....(((.(......).))).)))))))))))	chr15:30927186-30927513(+)$1	1	66	105	14.9515
...(((...(((..((...))..)))..))).)))).))	chr9:117026534-117026738(+)$1	1	86	125	10.5512
.(.(((((...((..((......))...))...))))))	chr12:100904546-100904854(+)$1	1	55	94	14.8929
(..(((((((.(((..((((......).)))..))).))	chr9:14848563-14848778(-)$1	1	11	50	11.8481
((.((((..(((.((......)).)))..)))).)))))	chr18:697138-697412(-)$1	1	28	67	11.5497
((((((..((((...(((.....)))...))))...)))	chr14:56079066-56079380(+)$1	1	214	253	14.6435
(((.(((((((...(((......)))...)))).)))))	chr6:26055960-26056203(-)$1	1	120	159	16.3608
(..((((..((((...............))))..)))).	chr2:203164869-203165111(+)$1	1	192	231	10.2441
((...(((.(((...(((....)))...)))))).))))	chr16:2814766-2814993(+)$1	1	105	144	14.0689
....(((...((((..(((....)))..).)))....))	chr14:50246903-50247135(+)$1	1	21	60	11.0690
(((.(((.(((((((.........))).)))).))))))	chr1:109773452-109773742(+)$1	1	28	67	11.2839
....((((((((..(((......)))..).)).))))).	chr2:232577051-232577304(+)$1	1	180	219	15.2488
(...(((.((.(((.(((.....))).).))...)).))	chr11:68369242-68369531(+)$1	1	140	179	12.0236
....(((..(((((((......))))))).)))...)))	chr6:2115950-2116214(-)$1	1	68	107	14.5800
..(((((...(((.(......).)))...)))))..)).	chr16:4910768-4911182(+)$1	1	302	341	14.1391
))(((((((((((.((((.....)))).))))).)))..	chr16:67979836-67980061(-)$1	1	73	112	10.8855

#PSSM
c : 0.11	b : 0.11	f : 0.11	e : 0.09	g : 0.07	# : 0.07	= : 0.07	d : 0.07	i : 0.03	[ : 0.03	! : 0.03	& : 0.01	: : 0.01	h : 0.01	a : 0.01	4 : 0.01	$ : 0.01	' : 0.01	
! : 0.11	b : 0.09	e : 0.09	g : 0.07	# : 0.07	= : 0.07	d : 0.07	: : 0.05	c : 0.05	f : 0.05	" : 0.03	a : 0.03	[ : 0.01	& : 0.01	h : 0.01	4 : 0.01	i : 0.01	$ : 0.01	' : 0.01	
! : 0.19	[ : 0.09	e : 0.09	# : 0.07	" : 0.07	g : 0.05	c : 0.05	= : 0.05	: : 0.03	d : 0.03	f : 0.03	$ : 0.03	] : 0.01	& : 0.01	h : 0.01	4 : 0.01	i : 0.01	b : 0.01	' : 0.01	
c : 0.15	d : 0.13	e : 0.11	! : 0.09	" : 0.07	[ : 0.07	g : 0.05	= : 0.05	h : 0.03	i : 0.03	f : 0.03	# : 0.03	& : 0.01	b : 0.01	$ : 0.01	' : 0.01	
c : 0.26	e : 0.15	d : 0.15	g : 0.09	= : 0.05	h : 0.03	b : 0.03	" : 0.03	f : 0.03	& : 0.01	i : 0.01	: : 0.01	! : 0.01	[ : 0.01	$ : 0.01	
c : 0.32	d : 0.17	e : 0.11	= : 0.07	g : 0.07	! : 0.03	h : 0.03	[ : 0.03	f : 0.03	b : 0.01	i : 0.01	: : 0.01	$ : 0.01	
c : 0.23	d : 0.19	e : 0.11	= : 0.09	! : 0.07	f : 0.07	[ : 0.05	g : 0.03	h : 0.03	: : 0.01	i : 0.01	$ : 0.01	" : 0.01	
! : 0.15	c : 0.13	e : 0.11	= : 0.09	d : 0.09	f : 0.07	g : 0.05	" : 0.05	a : 0.03	h : 0.03	# : 0.03	[ : 0.03	: : 0.01	b : 0.01	i : 0.01	
[ : 0.19	d : 0.13	! : 0.09	= : 0.09	e : 0.09	f : 0.07	" : 0.07	g : 0.05	b : 0.03	# : 0.03	c : 0.03	: : 0.01	i : 0.01	h : 0.01	
d : 0.21	e : 0.21	c : 0.11	= : 0.09	g : 0.07	[ : 0.05	f : 0.05	" : 0.05	# : 0.03	b : 0.03	i : 0.01	h : 0.01	
e : 0.24	d : 0.21	c : 0.13	g : 0.09	[ : 0.07	= : 0.05	" : 0.03	f : 0.03	# : 0.03	i : 0.01	h : 0.01	b : 0.01	
e : 0.26	d : 0.21	c : 0.17	= : 0.05	" : 0.05	g : 0.05	f : 0.03	a : 0.03	b : 0.03	[ : 0.01	i : 0.01	! : 0.01	
e : 0.24	d : 0.15	! : 0.15	" : 0.15	c : 0.09	[ : 0.05	g : 0.05	= : 0.03	b : 0.03	
e : 0.23	! : 0.15	" : 0.13	[ : 0.09	c : 0.07	d : 0.07	a : 0.07	g : 0.05	b : 0.03	= : 0.03	x : 0.01	
c : 0.26	[ : 0.17	" : 0.09	b : 0.07	d : 0.07	! : 0.07	e : 0.05	= : 0.03	o : 0.03	g : 0.03	f : 0.01	x : 0.01	a : 0.01	
c : 0.34	b : 0.17	o : 0.11	! : 0.07	d : 0.07	= : 0.03	e : 0.03	g : 0.03	[ : 0.01	f : 0.01	a : 0.01	x : 0.01	r : 0.01	
c : 0.36	b : 0.21	o : 0.17	d : 0.05	= : 0.03	q : 0.01	! : 0.01	f : 0.01	g : 0.01	e : 0.01	l : 0.01	x : 0.01	r : 0.01	
o : 0.59	c : 0.15	b : 0.07	d : 0.03	q : 0.01	f : 0.01	e : 0.01	n : 0.01	l : 0.01	x : 0.01	r : 0.01	
o : 0.65	n : 0.13	c : 0.05	q : 0.01	f : 0.01	e : 0.01	d : 0.01	l : 0.01	x : 0.01	m : 0.01	r : 0.01	
o : 0.65	n : 0.13	m : 0.03	q : 0.01	c : 0.01	f : 0.01	e : 0.01	l : 0.01	b : 0.01	a : 0.01	x : 0.01	r : 0.01	
o : 0.65	n : 0.13	l : 0.05	e : 0.03	m : 0.03	q : 0.01	b : 0.01	x : 0.01	r : 0.01	
o : 0.57	n : 0.13	l : 0.05	e : 0.05	m : 0.03	q : 0.01	d : 0.01	2 : 0.01	b : 0.01	x : 0.01	r : 0.01	a : 0.01	
o : 0.51	n : 0.11	e : 0.05	d : 0.05	l : 0.03	c : 0.03	q : 0.01	a : 0.01	2 : 0.01	b : 0.01	x : 0.01	m : 0.01	r : 0.01	g : 0.01	] : 0.01	
c : 0.38	b : 0.17	d : 0.09	o : 0.09	e : 0.05	= : 0.03	g : 0.03	] : 0.03	q : 0.01	f : 0.01	x : 0.01	r : 0.01	
c : 0.48	b : 0.21	d : 0.09	e : 0.05	= : 0.03	g : 0.03	o : 0.03	f : 0.01	x : 0.01	
c : 0.44	3 : 0.13	d : 0.09	2 : 0.05	= : 0.03	e : 0.03	b : 0.03	g : 0.03	] : 0.03	o : 0.03	f : 0.01	x : 0.01	
2 : 0.24	3 : 0.19	] : 0.15	c : 0.09	d : 0.07	a : 0.05	= : 0.03	g : 0.03	e : 0.03	f : 0.01	> : 0.01	x : 0.01	
2 : 0.21	3 : 0.19	e : 0.13	] : 0.09	d : 0.07	g : 0.05	= : 0.03	4 : 0.03	f : 0.03	a : 0.03	c : 0.01	b : 0.01	> : 0.01	x : 0.01	
e : 0.23	d : 0.19	c : 0.09	g : 0.09	= : 0.07	b : 0.05	f : 0.05	3 : 0.05	4 : 0.03	a : 0.03	> : 0.01	2 : 0.01	] : 0.01	
e : 0.24	d : 0.23	c : 0.09	= : 0.07	g : 0.07	] : 0.07	b : 0.05	4 : 0.03	f : 0.03	3 : 0.01	i : 0.01	> : 0.01	
d : 0.24	e : 0.23	c : 0.11	] : 0.07	= : 0.07	g : 0.05	3 : 0.03	4 : 0.03	f : 0.03	b : 0.03	i : 0.01	> : 0.01	
d : 0.23	e : 0.23	c : 0.09	= : 0.07	g : 0.07	] : 0.05	3 : 0.05	2 : 0.05	f : 0.03	i : 0.01	h : 0.01	> : 0.01	b : 0.01	
e : 0.15	c : 0.13	d : 0.13	] : 0.11	= : 0.09	2 : 0.09	g : 0.07	f : 0.03	b : 0.03	3 : 0.03	4 : 0.01	i : 0.01	h : 0.01	> : 0.01	
c : 0.15	d : 0.11	= : 0.09	g : 0.09	e : 0.09	2 : 0.07	] : 0.07	b : 0.05	3 : 0.05	a : 0.03	4 : 0.03	f : 0.03	i : 0.01	h : 0.01	> : 0.01	
c : 0.19	d : 0.11	2 : 0.09	= : 0.07	b : 0.07	g : 0.07	e : 0.07	3 : 0.05	] : 0.05	[ : 0.03	4 : 0.03	f : 0.03	i : 0.01	h : 0.01	> : 0.01	
c : 0.19	e : 0.11	d : 0.11	3 : 0.07	b : 0.07	= : 0.07	2 : 0.05	] : 0.05	f : 0.05	4 : 0.03	g : 0.03	i : 0.03	a : 0.01	h : 0.01	> : 0.01	
c : 0.19	e : 0.11	d : 0.11	= : 0.07	f : 0.07	3 : 0.05	b : 0.05	g : 0.05	] : 0.05	h : 0.03	i : 0.03	4 : 0.03	2 : 0.01	! : 0.01	[ : 0.01	> : 0.01	
c : 0.19	e : 0.13	d : 0.13	= : 0.07	f : 0.07	2 : 0.05	] : 0.05	g : 0.05	3 : 0.03	h : 0.03	b : 0.03	i : 0.03	! : 0.01	4 : 0.01	> : 0.01	
c : 0.19	e : 0.13	d : 0.13	2 : 0.11	f : 0.09	] : 0.05	: : 0.03	= : 0.03	h : 0.03	g : 0.03	o : 0.01	3 : 0.01	4 : 0.01	> : 0.01	i : 0.01	a : 0.01	

#score	674.4209374943678
#seq	52
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_transcript_m2_run2.txt

#BEAR
"ddddoooooodddd	chr2:234197358-234197623(+)$1	265	89	104	13.6578
"ddddoooooodddd	chr2:234184452-234184656(+)$1	204	79	94	13.6578
eeeeeooooooeeee	chr12:6619435-6619649(+)$1	214	45	60	10.8192
[ddddoooooodddd	chr11:18425230-18425459(+)$1	229	41	56	13.5923
"ddddoooooodddd	chr2:234184437-234184652(+)$1	215	94	109	13.6578
""cccooooooccc2	chr11:122929975-122930185(-)$1	210	32	47	10.1391
eeeeeooooooeeee	chr20:47895403-47895640(+)$1	237	10	25	10.8192
:ddddoooooodddd	chr1:109642828-109643031(+)$1	203	66	81	12.7618
"ddddoooooodddd	chr2:234184458-234184666(+)$1	208	73	88	13.6578
[ddddoooooodddd	chr8:1780062-1780355(+)$1	293	92	107	13.5923
""cccooooooccc3	chr11:65194011-65194244(+)$1	233	131	146	10.2986
[ddddoooooodddd	chr7:98479360-98479572(+)$1	212	102	117	13.5923
[ddddoooooodddd	chr2:101889341-101889562(-)$1	221	121	136	13.5923
"ddddoooooodddd	chr2:234184373-234184599(+)$1	226	158	173	13.6578
[ddddoooooodddd	chr7:98479329-98479539(+)$1	210	133	148	13.5923
eddddoooooodddd	chr2:203155968-203156246(+)$1	278	142	157	13.1904
f[cccoooooocccf	chr17:27049527-27049772(+)$1	245	164	179	9.7514
:ddddoooooodddd	chr1:109642908-109643136(+)$1	228	83	98	12.7618
:ddddoooooodddd	chr1:109642781-109642988(+)$1	207	113	128	12.7618
bddddoooooodddd	chr5:40832662-40832934(-)$1	272	15	30	13.1057
[cccoooooocccdd	chr3:39449882-39450131(+)$1	249	87	102	9.6382
eeeeeooooooeeee	chr15:66795084-66795302(-)$1	218	184	199	10.8192
[ddddoooooodddd	chr11:62621051-62621284(-)$1	233	135	150	13.5923
:ddddoooooodddd	chr1:109642819-109643021(+)$1	202	75	90	12.7618
:ddddoooooodddd	chr1:109642822-109643028(+)$1	206	72	87	12.7618
eeeeeooooooeeee	chr9:136216148-136216396(+)$1	248	13	28	10.8192
[ddddoooooodddd	chr5:138614426-138614643(+)$1	217	192	207	13.5923
:ddddoooooodddd	chr11:93454624-93454866(+)$1	242	48	63	12.7618
:ddddoooooodddd	chr1:109642808-109643018(+)$1	210	86	101	12.7618
[ddddoooooodddd	chr7:98479317-98479529(+)$1	212	145	160	13.5923
eeeeeooooooeeee	chr11:18426901-18427223(+)$1	322	23	38	10.8192
"ddddoooooodddd	chr2:234184421-234184630(+)$1	209	110	125	13.6578
eeeeeooooooeeee	chr12:6619382-6619588(+)$1	206	98	113	10.8192
:ddddoooooodddd	chr1:109642856-109643059(+)$1	203	135	150	12.7618
[ddddoooooodddd	chr7:98479372-98479606(+)$1	234	90	105	13.5923
eeeeeooooooeeee	chr6:31504048-31504281(-)$1	233	187	202	10.8192
:ddddoooooodddd	chr1:109642795-109643001(+)$1	206	99	114	12.7618
"ddddoooooodddd	chr13:27829119-27829410(+)$1	291	270	285	13.6578
"ddddoooooodddd	chr2:234184399-234184619(+)$1	220	132	147	13.6578
:ddddoooooodddd	chr14:21865351-21865614(-)$1	263	138	153	12.7618
f[cccoooooocccf	chr17:27049500-27049727(+)$1	227	191	206	9.7514
eeeeeooooooeeee	chr5:137896634-137896854(-)$1	220	131	146	10.8192

#otherMatches

#Seq PSSM
CGUGAUGUCCCUCAU	chr2:234197358-234197623(+)$1	265	89	104	13.6578
UCUGAGAGUGAUCGG	chr2:234184452-234184656(+)$1	204	79	94	13.6578
AUACAGAGUUAUGUG	chr12:6619435-6619649(+)$1	214	45	60	10.8192
UGUCUCUCUGAAGAC	chr11:18425230-18425459(+)$1	229	41	56	13.5923
UCUGAGAGUGAUCGG	chr2:234184437-234184652(+)$1	215	94	109	13.6578
AAGGCAGGCAGGCCC	chr11:122929975-122930185(-)$1	210	32	47	10.1391
GGAGAAAUGAGUUUC	chr20:47895403-47895640(+)$1	237	10	25	10.8192
AGUGUGAGUGGACGC	chr1:109642828-109643031(+)$1	203	66	81	12.7618
UCUGAGAGUGAUCGG	chr2:234184458-234184666(+)$1	208	73	88	13.6578
UGUGGGUGUGGCCGC	chr8:1780062-1780355(+)$1	293	92	107	13.5923
CACAGAUAGAACUGG	chr11:65194011-65194244(+)$1	233	131	146	10.2986
UGCCUUCUAUUAGGC	chr7:98479360-98479572(+)$1	212	102	117	13.5923
CGAUGACAAAAUAUC	chr2:101889341-101889562(-)$1	221	121	136	13.5923
UCUGAGAGUGAUCGG	chr2:234184373-234184599(+)$1	226	158	173	13.6578
UGCCUUCUAUUAGGC	chr7:98479329-98479539(+)$1	210	133	148	13.5923
GGGUGUUCAGUCACU	chr2:203155968-203156246(+)$1	278	142	157	13.1904
CUCCAAAAGAAUGGG	chr17:27049527-27049772(+)$1	245	164	179	9.7514
UGAUCUUAUUUGAUC	chr1:109642908-109643136(+)$1	228	83	98	12.7618
AGUGUGAGUGGACGC	chr1:109642781-109642988(+)$1	207	113	128	12.7618
CCAAAUAAGUUUUUG	chr5:40832662-40832934(-)$1	272	15	30	13.1057
CGCUAACACCAGUAG	chr3:39449882-39450131(+)$1	249	87	102	9.6382
GAGAAAUGUGAUUCU	chr15:66795084-66795302(-)$1	218	184	199	10.8192
UGAAAUCUGAUUUUC	chr11:62621051-62621284(-)$1	233	135	150	13.5923
AGUGUGAGUGGACGC	chr1:109642819-109643021(+)$1	202	75	90	12.7618
AGUGUGAGUGGACGC	chr1:109642822-109643028(+)$1	206	72	87	12.7618
UAGGACUGCAAUUCU	chr9:136216148-136216396(+)$1	248	13	28	10.8192
AGAGUGGAAUGACUC	chr5:138614426-138614643(+)$1	217	192	207	13.5923
GUCAGUGCUUUCUGA	chr11:93454624-93454866(+)$1	242	48	63	12.7618
AGUGUGAGUGGACGC	chr1:109642808-109643018(+)$1	210	86	101	12.7618
UGCCUUCUAUUAGGC	chr7:98479317-98479529(+)$1	212	145	160	13.5923
GAAAACUUUGUUUUU	chr11:18426901-18427223(+)$1	322	23	38	10.8192
UCUGAGAGUGAUCGG	chr2:234184421-234184630(+)$1	209	110	125	13.6578
AUACAGAGUUAUGUG	chr12:6619382-6619588(+)$1	206	98	113	10.8192
UGAUCUUAUUUGAUC	chr1:109642856-109643059(+)$1	203	135	150	12.7618
UGCCUUCUAUUAGGC	chr7:98479372-98479606(+)$1	234	90	105	13.5923
AUCAUCUUUCUAUGA	chr6:31504048-31504281(-)$1	233	187	202	10.8192
AGUGUGAGUGGACGC	chr1:109642795-109643001(+)$1	206	99	114	12.7618
UGUUCAAAAAGGAAU	chr13:27829119-27829410(+)$1	291	270	285	13.6578
UCUGAGAGUGAUCGG	chr2:234184399-234184619(+)$1	220	132	147	13.6578
ACUUCUCACAUGAAG	chr14:21865351-21865614(-)$1	263	138	153	12.7618
CUCCAAAAGAAUGGG	chr17:27049500-27049727(+)$1	227	191	206	9.7514
GAAGAUGCAGUUCUU	chr5:137896634-137896854(-)$1	220	131	146	10.8192

#DB
.((((......))))	chr2:234197358-234197623(+)$1	1	89	104	13.6578
.((((......))))	chr2:234184452-234184656(+)$1	1	79	94	13.6578
(((((......))))	chr12:6619435-6619649(+)$1	1	45	60	10.8192
.((((......))))	chr11:18425230-18425459(+)$1	1	41	56	13.5923
.((((......))))	chr2:234184437-234184652(+)$1	1	94	109	13.6578
..(((......))).	chr11:122929975-122930185(-)$1	1	32	47	10.1391
(((((......))))	chr20:47895403-47895640(+)$1	1	10	25	10.8192
.((((......))))	chr1:109642828-109643031(+)$1	1	66	81	12.7618
.((((......))))	chr2:234184458-234184666(+)$1	1	73	88	13.6578
.((((......))))	chr8:1780062-1780355(+)$1	1	92	107	13.5923
..(((......))).	chr11:65194011-65194244(+)$1	1	131	146	10.2986
.((((......))))	chr7:98479360-98479572(+)$1	1	102	117	13.5923
.((((......))))	chr2:101889341-101889562(-)$1	1	121	136	13.5923
.((((......))))	chr2:234184373-234184599(+)$1	1	158	173	13.6578
.((((......))))	chr7:98479329-98479539(+)$1	1	133	148	13.5923
)((((......))))	chr2:203155968-203156246(+)$1	1	142	157	13.1904
(.(((......))))	chr17:27049527-27049772(+)$1	1	164	179	9.7514
.((((......))))	chr1:109642908-109643136(+)$1	1	83	98	12.7618
.((((......))))	chr1:109642781-109642988(+)$1	1	113	128	12.7618
(((((......))))	chr5:40832662-40832934(-)$1	1	15	30	13.1057
.(((......)))))	chr3:39449882-39450131(+)$1	1	87	102	9.6382
(((((......))))	chr15:66795084-66795302(-)$1	1	184	199	10.8192
.((((......))))	chr11:62621051-62621284(-)$1	1	135	150	13.5923
.((((......))))	chr1:109642819-109643021(+)$1	1	75	90	12.7618
.((((......))))	chr1:109642822-109643028(+)$1	1	72	87	12.7618
(((((......))))	chr9:136216148-136216396(+)$1	1	13	28	10.8192
.((((......))))	chr5:138614426-138614643(+)$1	1	192	207	13.5923
.((((......))))	chr11:93454624-93454866(+)$1	1	48	63	12.7618
.((((......))))	chr1:109642808-109643018(+)$1	1	86	101	12.7618
.((((......))))	chr7:98479317-98479529(+)$1	1	145	160	13.5923
(((((......))))	chr11:18426901-18427223(+)$1	1	23	38	10.8192
.((((......))))	chr2:234184421-234184630(+)$1	1	110	125	13.6578
(((((......))))	chr12:6619382-6619588(+)$1	1	98	113	10.8192
.((((......))))	chr1:109642856-109643059(+)$1	1	135	150	12.7618
.((((......))))	chr7:98479372-98479606(+)$1	1	90	105	13.5923
(((((......))))	chr6:31504048-31504281(-)$1	1	187	202	10.8192
.((((......))))	chr1:109642795-109643001(+)$1	1	99	114	12.7618
.((((......))))	chr13:27829119-27829410(+)$1	1	270	285	13.6578
.((((......))))	chr2:234184399-234184619(+)$1	1	132	147	13.6578
.((((......))))	chr14:21865351-21865614(-)$1	1	138	153	12.7618
(.(((......))))	chr17:27049500-27049727(+)$1	1	191	206	9.7514
(((((......))))	chr5:137896634-137896854(-)$1	1	131	146	10.8192

#PSSM
" : 0.23	[ : 0.23	: : 0.23	e : 0.21	f : 0.04	b : 0.02	
d : 0.69	e : 0.19	" : 0.04	[ : 0.04	c : 0.02	
d : 0.69	e : 0.19	c : 0.11	
d : 0.69	e : 0.19	c : 0.11	
d : 0.69	e : 0.19	c : 0.09	o : 0.02	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 0.97	c : 0.02	
d : 0.69	e : 0.19	c : 0.11	
d : 0.69	e : 0.19	c : 0.11	
d : 0.71	e : 0.19	c : 0.09	
d : 0.71	e : 0.19	f : 0.04	2 : 0.02	3 : 0.02	

#score	521.6419247324642
#seq	42
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_UTR_m1_run2.txt

#BEAR
d[gggggggccc!!a[cccmmmmccc]a22ccc22ggggg	chr17:74380105-74380331(+)$1	226	133	173	18.1388
b[ggggggg!!eeeee[ccclllccc]eeeee]ggggggg	chr17:63556547-63556789(-)$1	242	26	66	13.9524
[ccca[ffffffa[cccbbmmmmbb]ccc]a]ffffff]a	chr17:7477111-7477400(+)$1	289	85	125	12.5654
eee"""a[ccc[ccc[annnnna]ccc]ccc]a22eeeee	chr19:975253-975501(+)$1	248	70	110	11.7229
d[gggggggccc!!a[cccmmmmccc]a22ccc22ggggg	chr17:74380011-74380288(+)$1	277	227	267	18.1388
==========iiiiiiiiimmmmiiiiiiiii4444====	chr17:79861189-79861472(-)$1	283	143	183	16.0565
ffffff!!ccc!!eeeeeooooooeeeee22ccc]fffff	chr3:49755246-49755516(+)$1	270	118	158	12.0741
44gggggggeeeee!!cccmmmmccc22eeeee:ccceee	chr17:48542230-48542508(+)$1	278	127	167	12.6523
:ggggggg[bb!!ggggggglllggggggg22bbgggggg	chr20:62330408-62330642(-)$1	234	79	119	12.1984
iiiiiii####hhhhhhhhmmmmhhhhhhhh4444iiiii	chr8:144678746-144678989(-)$1	243	187	227	12.9104
nndddd==========cccmmmmccc4444==========	chr17:80192094-80192326(+)$1	232	134	174	15.0872
""ffffff!!bb"""ddddllldddd]bb22ffffff333	chr13:113863738-113863997(+)$1	259	137	177	12.0436
hhhhhhhh"""ccc!!cccmmmmccc22ccc]hhhhhhhh	chr20:35491842-35492135(-)$1	293	140	180	13.0874
ffff[eeeee[ccc!!cccmmmmccc]ccc22eeeee]ff	chr3:98451615-98451834(+)$1	219	146	186	14.0227
eeeee!!ccc[dddd[ccclllccc]dddd]ccc]eeeee	chr2:11484329-11484567(-)$1	238	91	131	12.6113
c]cccccc[ccc[bb!!ccclllccc333bb]ccc]cccG	chr5:138629655-138629972(+)$1	317	242	282	12.9622
{Aeeeee!!==========mmmm==========]eeeee:	chr2:242673993-242674363(+)$1	370	62	102	12.2343
[affffff[iiiiiiiiiammmma]iiiiiiiii]fffff	chr22:41488086-41488355(+)$1	269	155	195	14.4498
eebb!!ccc####ddddammmma]dddd22ccc22bb]ee	chr17:80192804-80193051(+)$1	247	52	92	11.8414
a!!ddddccc"""ccc[a!!ammmma22a]ccc22ccc33	chr8:30669833-30670093(-)$1	260	41	81	12.1542
a[==========[gggggggnnnnnggggggg]=======	chr2:242707695-242707973(+)$1	278	217	257	13.3671
b[eeeee[ggggggg[cccmmmmccc]ggggggg]eeeee	chr19:3062250-3062523(-)$1	273	32	72	15.1716
ggg!!ccc[ccc[bb[cccmmmmccc]bb22ccc]ccc22	chr19:10613047-10613294(-)$1	247	157	197	14.8845
b[ggggggg[bb!!fffffflllffffff22bb]gggggg	chr17:79860162-79860406(-)$1	244	45	85	12.4426
======[a[ccc[a[ddddmmmmdddda]ccca]======	chr16:4660776-4661049(-)$1	273	178	218	15.5660
d[gggggggccc!!a[cccmmmmccc]a22ccc22ggggg	chr17:74380179-74380432(+)$1	253	59	99	18.1388
####ggggggg[a!!ddddllldddd4444a]ggggggg3	chr13:24153372-24153631(+)$1	259	59	99	14.2378
c[dddd[a!!dddd!!ccclllccc22dddd]a]ddddcc	chr20:57267737-57268015(+)$1	278	110	150	11.8360
======bb[ccc[ccc[bbmmmmbb]cccccc333bb333	chr1:27320165-27320415(+)$1	250	160	200	13.6822
d"""bb[dddd[ccc[cccmmmmccc]ccc]dddd]bb33	chr17:7211174-7211424(+)$1	250	83	123	12.5555
ggggggiiiiiiiii[annnnna]iiiiiiiii333gggg	chr7:1577316-1577592(+)$1	276	114	154	13.7114
ggggggg[eeeee[a[cccbbmmmmbb22ccc]a]eeeee	chr3:13461595-13461878(-)$1	283	38	78	11.6792
h[iiiiiiiiidddd[cccoooooocccdddd]iiiiiii	chr16:2029100-2029389(+)$1	289	23	63	14.0135
!dddd[dddd[a####cccooooooccc4444adddd]dd	chr17:79825821-79826061(+)$1	240	183	223	12.6137
g[ggggggg[==========lll==========22ggggg	chr16:1413497-1413781(-)$1	284	193	233	16.6707
FFFFFF==========cccmmmmccc4444==========	chr17:80192190-80192484(+)$1	294	38	78	14.6695
eeeee[dddd[bb[cccoooooocccbb]dddd]eeeeed	chr17:79860483-79860800(-)$1	317	81	121	10.9860
fffff[bb!!ccc[a[cccmmmmccc]a22ccc]bb]fff	chr16:75284644-75284909(-)$1	265	72	112	15.4070
cc[iiiiiiiii!!ccc[aooooooa]ccciiiiiiiiic	chr11:3013154-3013467(-)$1	313	30	70	15.1220
b!!ggggggg"""a!!ddddmmmmdddd22a22ggggggg	chr5:179248476-179248793(+)$1	317	132	172	14.4619
!ggggggg[a[ccc!!cccooooooccc22ccc]aggggg	chr21:46933935-46934215(-)$1	280	103	143	16.5565
a[eeeee[a[bba!!ddddmmmmdddd22a]bbaeeeee]	chr7:127671509-127671761(+)$1	252	157	197	12.8993
[ffffff[dddd[a!!bb[ammmma]bb22a]dddd]fff	chr20:62694437-62694758(+)$1	321	126	166	12.0404
gggg==========[ddddmmmmdddd==========ddd	chr22:41488522-41488777(+)$1	255	197	237	15.0149
b[ggggggg"""ccc[cccmmmmccc]ccc4444gggggg	chr19:42788121-42788369(+)$1	248	90	130	16.9246
ffffffccc[bb####cccnnnnnccc333bbccc]ffff	chr17:79860000-79860248(-)$1	248	33	73	13.0243
iiiiiiiiiccceeeee!!ammmma22eeeee22ccc]ii	chr16:725992-726263(+)$1	271	140	180	12.1997
#eeeeeeeeee[iiiiiiiiillliiiiiiiii22eeeee	chr14:39736365-39736607(+)$1	242	99	139	12.1040
gggggggeeeee!!a[bboooooobb]a22eeeee]gggg	chr8:103424361-103424610(-)$1	249	122	162	13.7000
[ccca[ffffffa[cccbbmmmmbb]ccc]a]ffffff]a	chr17:7477036-7477311(+)$1	275	160	200	12.5654
fff"""ccc!!a[ddddoooooodddd]a]ccc333ffff	chr17:75315838-75316103(+)$1	265	136	176	13.1685
e[ccc$$$$$ccc[a!!cccnnnnnccc22a]ccccccee	chr16:2551226-2551479(+)$1	253	110	150	11.9424
eeeee[ffffff[a[ddddmmmmdddd]a]ffffff]eee	chr19:2270197-2270429(+)$1	232	108	148	12.2869

#otherMatches

#Seq PSSM
CCCGGCGCCGACAGCACCCGCGGGGGCGAGGUCGUGGCGU	chr17:74380105-74380331(+)$1	226	133	173	18.1388
GAGCCCCCUCCCCAGCGCGGUGACCGGGUUGGCGGGGGGC	chr17:63556547-63556789(-)$1	242	26	66	13.9524
GGCGGGACUUCCAGCGCGCUGGUGCUGCGGUGGGAGGUGC	chr17:7477111-7477400(+)$1	289	85	125	12.5654
CGUAAGUGGCUGUCCAGAAAGGCGGGAGGGUGGGCACGGG	chr19:975253-975501(+)$1	248	70	110	11.7229
CCCGGCGCCGACAGCACCCGCGGGGGCGAGGUCGUGGCGU	chr17:74380011-74380288(+)$1	277	227	267	18.1388
GUGCUGCUGCCUGGGCCCGGAGGUGGGCCUGGCCCCGUAG	chr17:79861189-79861472(-)$1	283	143	183	16.0565
UGGGGGAGCCCUGGGCAGUCUAGGUUGUCAUGGGACCCUC	chr3:49755246-49755516(+)$1	270	118	158	12.0741
AGUCUCUCCGGUGGAAGGCAGAGGCCAGUCACCAGGACUG	chr17:48542230-48542508(+)$1	278	127	167	12.6523
UGGUUCCCAGGACCUGGGGGGGACCUCCAGCCCCGGGAAC	chr20:62330408-62330642(-)$1	234	79	119	12.1984
CUUGGGGUUGUCCCUGCCCGACAGGGCGGGGUGCUUCUUA	chr8:144678746-144678989(-)$1	243	187	227	12.9104
GCUGCUCCCGGGUUUCCCAGAAAUGGUUCCGAGGCCUGGG	chr17:80192094-80192326(+)$1	232	134	174	15.0872
ggcgggcggagcggagcucggcgggcggcggcgcucgggg	chr13:113863738-113863997(+)$1	259	137	177	12.0436
cgggcgccgggcggagcCGCAGCCGGAGCCGGGGCGCCUG	chr20:35491842-35492135(-)$1	293	140	180	13.0874
GUCUCGGAGCCCGGUGCGCCUCUGCGGUCGUCGCUCCUGG	chr3:98451615-98451834(+)$1	219	146	186	14.0227
gggccgggccgggcugggccgggcugggccgggcgggccC	chr2:11484329-11484567(-)$1	238	91	131	12.6113
CGCUCGAGGCCUGAGGGACAGACUGUACACUGGGGGCUUG	chr5:138629655-138629972(+)$1	317	242	282	12.9622
GCGGCUCUGGGCCUGCGGCGGGCGCUGCGGGUUGGAGCUC	chr2:242673993-242674363(+)$1	370	62	102	12.2343
gccgccggagcggggccuccucggugggcuccgcgucggc	chr22:41488086-41488355(+)$1	269	155	195	14.4498
UCUCAGGUUGCAGCUCCCUGGUGAGGAGAGGACAAGGUGA	chr17:80192804-80193051(+)$1	247	52	92	11.8414
cgacggcggcggagggagaggggagcggcgcccgggccgg	chr8:30669833-30670093(-)$1	260	41	81	12.1542
CUCAGGCCGUGGACGCCCUCGGGAGGGGGGUGACUGUGGC	chr2:242707695-242707973(+)$1	278	217	257	13.3671
UGCCGGCGUCGCCGCCAUUAGACAAUAGCgguggggccgg	chr19:3062250-3062523(-)$1	273	32	72	15.1716
AGAAGGAGGCCCGGGGGCUCCGAGGCGUUGAGGGGCUCGA	chr19:10613047-10613294(-)$1	247	157	197	14.8845
cgccggccccgcccgggggUUCCGCCCCUCUGUAGGGCUG	chr17:79860162-79860406(-)$1	244	45	85	12.4426
UCCCCCAGUCAUGGUGCUGGUGCCAGCUGGUGCAGGGGGA	chr16:4660776-4661049(-)$1	273	178	218	15.5660
CCCGGCGCCGACAGCACCCGCGGGGGCGAGGUCGUGGCGU	chr17:74380179-74380432(+)$1	253	59	99	18.1388
GGGCGGGGCCCGGGUGGGCGGUGCCCUGAGCGGGGCUCCU	chr13:24153372-24153631(+)$1	259	59	99	14.2378
Ugccgggcagggccggggcggugccgaggccgggccggag	chr20:57267737-57268015(+)$1	278	110	150	11.8360
ACGGCAGAGCAGAGGUCGccgccgccgcccugggauccca	chr1:27320165-27320415(+)$1	250	160	200	13.6822
GGGGUUGGCCCGGUGACGUUGGAGCGACGCAGGGCGGGGG	chr17:7211174-7211424(+)$1	250	83	123	12.5555
UCCCUGGCCCAGGGUGUGGGGAGGGUCCUGGGCUGGCAGG	chr7:1577316-1577592(+)$1	276	114	154	13.7114
cccgcccccgcgcUCAUCACCUGCUGGCCUggcgcgcgcg	chr3:13461595-13461878(-)$1	283	38	78	11.6792
GCUCCAGGGCCCUGCGUGUGACGGUGCAGCAGCGGCUCUG	chr16:2029100-2029389(+)$1	289	23	63	14.0135
AGGUGACUUGAGUUUUGGCAAUUUGGCUUUCCCCAAGCCG	chr17:79825821-79826061(+)$1	240	183	223	12.6137
ACGGGGCGUAGGAGCUGGCUGGCGGCCGGCUCUGCAUGUU	chr16:1413497-1413781(-)$1	284	193	233	16.6707
GCUGCUCCCGGGUUUCCCAGAAAUGGUUCCGAGGCCUGGG	chr17:80192190-80192484(+)$1	294	38	78	14.6695
GACCUGGGGCGCCAUCCCGCGCCGGAGGGGCCUGGGGUCA	chr17:79860483-79860800(-)$1	317	81	121	10.9860
ACUCCGGCCGCCGGCGCGGGGUUCCGGGAGCGGAGCGGGA	chr16:75284644-75284909(-)$1	265	72	112	15.4070
cggccgggcccggacgggcggguggggccgcggguccggc	chr11:3013154-3013467(-)$1	313	30	70	15.1220
UGACGCGGGUAAACAAGCGCGGGGGUGCGGGGGACUCGCG	chr5:179248476-179248793(+)$1	317	132	172	14.4619
CUGGGCCUGUGCCAUGGGCUAGAGCGUCACUGGGGAGGCC	chr21:46933935-46934215(-)$1	280	103	143	16.5565
GAGGACCAGCGGCGUGGCGGCUGCGCUCGGACCCGGUccg	chr7:127671509-127671761(+)$1	252	157	197	12.8993
GUCGGCUGCGGCGGGUGUGGGAGGUGGCGACGGCCGGGGC	chr20:62694437-62694758(+)$1	321	126	166	12.0404
UCGGGAAUUCGCCGCAGCGGACGCGCUCGGCGAAUUUGUG	chr22:41488522-41488777(+)$1	255	197	237	15.0149
cggggcggggaggcgguggugguucggcgcggggcUCGCU	chr19:42788121-42788369(+)$1	248	90	130	16.9246
GGCGGCGCCAGCAGCAGGCACAGCGCCAGGGCGGCGGCCG	chr17:79860000-79860248(-)$1	248	33	73	13.0243
AGGAGCUGGAGGACUGGGACCCAGGCACCAGUGCCCUGCC	chr16:725992-726263(+)$1	271	140	180	12.1997
CGGGAUGGGCAGCGUAGGCCUGUGAGGCCUGCGGGUGCCC	chr14:39736365-39736607(+)$1	242	99	139	12.1040
GAGUGGAGGACGAGAAGGAAAGCACCAUGACGUCCAUCCA	chr8:103424361-103424610(-)$1	249	122	162	13.7000
GGCGGGACUUCCAGCGCGCUGGUGCUGCGGUGGGAGGUGC	chr17:7477036-7477311(+)$1	275	160	200	12.5654
GGUGGAGAGAGGAGGCUGCCGGAAGCCGCACUCGGGACCU	chr17:75315838-75316103(+)$1	265	136	176	13.1685
GUGGGAACGUGCAGCUAAGGGUGGGCCUGUGGUGCCCCCU	chr16:2551226-2551479(+)$1	253	110	150	11.9424
GCCGUCGAGCGUGCGCUGCGGGAGCGGGGAGCGCUUUGCG	chr19:2270197-2270429(+)$1	232	108	148	12.2869

#DB
(.((((((((((..(.(((....))).)..)))..)))))	chr17:74380105-74380331(+)$1	1	133	173	18.1388
(.(((((((..(((((.(((...))).))))).)))))))	chr17:63556547-63556789(-)$1	1	26	66	13.9524
.((((.(((((((.(((((....)).))).).)))))).)	chr17:7477111-7477400(+)$1	1	85	125	12.5654
(((...(.(((.(((.(.....).))).))).)..)))))	chr19:975253-975501(+)$1	1	70	110	11.7229
(.((((((((((..(.(((....))).)..)))..)))))	chr17:74380011-74380288(+)$1	1	227	267	18.1388
(((((((((((((((((((....)))))))))....))))	chr17:79861189-79861472(-)$1	1	143	183	16.0565
((((((..(((..(((((......)))))..))).)))))	chr3:49755246-49755516(+)$1	1	118	158	12.0741
..)))))))(((((..(((....)))..))))).((((((	chr17:48542230-48542508(+)$1	1	127	167	12.6523
.(((((((.((..(((((((...)))))))..))))))))	chr20:62330408-62330642(-)$1	1	79	119	12.1984
(((((((....((((((((....))))))))....)))))	chr8:144678746-144678989(-)$1	1	187	227	12.9104
..))))(((((((((((((....)))....))))))))))	chr17:80192094-80192326(+)$1	1	134	174	15.0872
..((((((..((...((((...)))).))..))))))...	chr13:113863738-113863997(+)$1	1	137	177	12.0436
((((((((...(((..(((....)))..))).))))))))	chr20:35491842-35492135(-)$1	1	140	180	13.0874
((((.(((((.(((..(((....))).)))..))))).))	chr3:98451615-98451834(+)$1	1	146	186	14.0227
(((((..(((.((((.(((...))).)))).))).)))))	chr2:11484329-11484567(-)$1	1	91	131	12.6113
).)))(((.(((.((..(((...)))...)).))).))))	chr5:138629655-138629972(+)$1	1	242	282	12.9622
.((((((..((((((((((....)))))))))).))))).	chr2:242673993-242674363(+)$1	1	62	102	12.2343
.(((((((.((((((((((....).))))))))).)))))	chr22:41488086-41488355(+)$1	1	155	195	14.4498
((((..(((....(((((....).))))..)))..)).))	chr17:80192804-80193051(+)$1	1	52	92	11.8414
(..(((((((...(((.(..(....)..).)))..)))..	chr8:30669833-30670093(-)$1	1	41	81	12.1542
(.((((((((((.(((((((.....))))))).)))))))	chr2:242707695-242707973(+)$1	1	217	257	13.3671
(.(((((.(((((((.(((....))).))))))).)))))	chr19:3062250-3062523(-)$1	1	32	72	15.1716
(((..(((.(((.((.(((....))).))..))).)))..	chr19:10613047-10613294(-)$1	1	157	197	14.8845
(.(((((((.((..((((((...))))))..)).))))))	chr17:79860162-79860406(-)$1	1	45	85	12.4426
((((((.(.(((.(.((((....))))).)))).))))))	chr16:4660776-4661049(-)$1	1	178	218	15.5660
(.((((((((((..(.(((....))).)..)))..)))))	chr17:74380179-74380432(+)$1	1	59	99	18.1388
....(((((((.(..((((...))))....).))))))).	chr13:24153372-24153631(+)$1	1	59	99	14.2378
(.((((.(..((((..(((...)))..)))).).))))))	chr20:57267737-57268015(+)$1	1	110	150	11.8360
((((((((.(((.(((.((....)).))))))...))...	chr1:27320165-27320415(+)$1	1	160	200	13.6822
(...((.((((.(((.(((....))).))).)))).))..	chr17:7211174-7211424(+)$1	1	83	123	12.5555
(((((((((((((((.(.....).)))))))))...))))	chr7:1577316-1577592(+)$1	1	114	154	13.7114
(((((((.(((((.(.(((((....))..))).).)))))	chr3:13461595-13461878(-)$1	1	38	78	11.6792
(.(((((((((((((.(((......))))))).)))))))	chr16:2029100-2029389(+)$1	1	23	63	14.0135
.((((.((((.(....(((......)))....))))).))	chr17:79825821-79826061(+)$1	1	183	223	12.6137
(.(((((((.((((((((((...))))))))))..)))))	chr16:1413497-1413781(-)$1	1	193	233	16.6707
(((((((((((((((((((....)))....))))))))))	chr17:80192190-80192484(+)$1	1	38	78	14.6695
(((((.((((.((.(((......))))).)))).)))))(	chr17:79860483-79860800(-)$1	1	81	121	10.9860
(((((.((..(((.(.(((....))).)..))).)).)))	chr16:75284644-75284909(-)$1	1	72	112	15.4070
((.(((((((((..(((.(......).)))))))))))))	chr11:3013154-3013467(-)$1	1	30	70	15.1220
(..(((((((...(..((((....))))..)..)))))))	chr5:179248476-179248793(+)$1	1	132	172	14.4619
.(((((((.(.(((..(((......)))..))).))))))	chr21:46933935-46934215(-)$1	1	103	143	16.5565
(.(((((.(.(((..((((....))))..).)))))))).	chr7:127671509-127671761(+)$1	1	157	197	12.8993
.((((((.((((.(..((.(....).))..).)))).)))	chr20:62694437-62694758(+)$1	1	126	166	12.0404
))))((((((((((.((((....))))))))))))))(((	chr22:41488522-41488777(+)$1	1	197	237	15.0149
(.(((((((...(((.(((....))).)))....))))))	chr19:42788121-42788369(+)$1	1	90	130	16.9246
(((((((((.((....(((.....)))...))))).))))	chr17:79860000-79860248(-)$1	1	33	73	13.0243
(((((((((((((((((..(....)..)))))..))).))	chr16:725992-726263(+)$1	1	140	180	12.1997
.((((((((((.(((((((((...)))))))))..)))))	chr14:39736365-39736607(+)$1	1	99	139	12.1040
((((((((((((..(.((......)).)..))))).))))	chr8:103424361-103424610(-)$1	1	122	162	13.7000
.((((.(((((((.(((((....)).))).).)))))).)	chr17:7477036-7477311(+)$1	1	160	200	12.5654
(((...(((..(.((((......)))).).)))...))))	chr17:75315838-75316103(+)$1	1	136	176	13.1685
(.(((.....(((.(..(((.....)))..).))))))))	chr16:2551226-2551479(+)$1	1	110	150	11.9424
(((((.((((((.(.((((....)))).).)))))).)))	chr19:2270197-2270429(+)$1	1	108	148	12.2869

#PSSM
e : 0.11	g : 0.11	b : 0.09	f : 0.09	d : 0.07	[ : 0.07	= : 0.05	c : 0.05	a : 0.05	i : 0.03	h : 0.03	# : 0.03	! : 0.03	4 : 0.01	: : 0.01	n : 0.01	" : 0.01	{ : 0.01	F : 0.01	
[ : 0.24	g : 0.13	e : 0.11	f : 0.11	c : 0.05	= : 0.05	i : 0.03	" : 0.03	! : 0.03	4 : 0.01	n : 0.01	h : 0.01	] : 0.01	A : 0.01	a : 0.01	# : 0.01	d : 0.01	F : 0.01	
g : 0.28	e : 0.15	f : 0.15	c : 0.07	= : 0.07	i : 0.05	d : 0.05	! : 0.03	h : 0.01	b : 0.01	# : 0.01	" : 0.01	F : 0.01	[ : 0.01	
g : 0.28	f : 0.13	e : 0.13	c : 0.07	= : 0.07	i : 0.07	d : 0.07	" : 0.05	h : 0.01	b : 0.01	! : 0.01	# : 0.01	F : 0.01	
g : 0.28	e : 0.13	f : 0.11	= : 0.09	i : 0.07	d : 0.07	a : 0.03	" : 0.03	c : 0.03	! : 0.03	h : 0.01	[ : 0.01	b : 0.01	F : 0.01	
g : 0.28	[ : 0.11	= : 0.09	f : 0.09	e : 0.09	i : 0.07	d : 0.05	" : 0.03	! : 0.03	c : 0.03	h : 0.01	b : 0.01	F : 0.01	$ : 0.01	
g : 0.26	f : 0.11	= : 0.09	i : 0.09	e : 0.09	c : 0.09	d : 0.05	[ : 0.05	! : 0.03	b : 0.03	a : 0.01	h : 0.01	$ : 0.01	
g : 0.22	c : 0.13	f : 0.09	[ : 0.09	= : 0.09	i : 0.07	e : 0.05	d : 0.05	! : 0.03	a : 0.03	b : 0.03	# : 0.01	h : 0.01	$ : 0.01	
g : 0.20	c : 0.13	[ : 0.13	= : 0.09	! : 0.07	e : 0.07	d : 0.07	i : 0.07	f : 0.05	# : 0.01	" : 0.01	a : 0.01	$ : 0.01	
c : 0.22	= : 0.11	! : 0.09	e : 0.09	i : 0.07	[ : 0.07	d : 0.07	f : 0.05	g : 0.05	# : 0.03	" : 0.03	b : 0.01	a : 0.01	$ : 0.01	
c : 0.22	= : 0.11	i : 0.09	b : 0.09	[ : 0.09	e : 0.07	" : 0.07	f : 0.05	d : 0.05	! : 0.03	# : 0.03	g : 0.03	
c : 0.24	= : 0.11	b : 0.09	e : 0.07	[ : 0.07	i : 0.07	d : 0.07	f : 0.05	" : 0.05	! : 0.03	a : 0.03	h : 0.01	# : 0.01	g : 0.01	
! : 0.15	c : 0.15	[ : 0.15	= : 0.09	e : 0.07	a : 0.07	i : 0.07	" : 0.05	d : 0.05	# : 0.05	h : 0.01	g : 0.01	b : 0.01	
! : 0.15	c : 0.15	[ : 0.11	= : 0.09	d : 0.09	e : 0.07	i : 0.07	a : 0.07	g : 0.05	b : 0.03	# : 0.03	h : 0.01	" : 0.01	
c : 0.16	! : 0.16	a : 0.13	i : 0.07	= : 0.07	d : 0.07	e : 0.05	g : 0.05	[ : 0.05	b : 0.03	# : 0.03	h : 0.01	" : 0.01	f : 0.01	
[ : 0.26	! : 0.16	d : 0.15	c : 0.11	= : 0.07	e : 0.05	i : 0.05	g : 0.03	# : 0.03	h : 0.01	f : 0.01	
c : 0.45	d : 0.16	[ : 0.05	i : 0.05	a : 0.03	e : 0.03	g : 0.03	! : 0.03	= : 0.03	b : 0.03	h : 0.01	f : 0.01	
c : 0.43	d : 0.13	b : 0.09	i : 0.05	n : 0.03	g : 0.03	= : 0.03	a : 0.03	o : 0.03	e : 0.01	h : 0.01	f : 0.01	[ : 0.01	! : 0.01	
c : 0.43	d : 0.13	o : 0.07	b : 0.05	n : 0.03	i : 0.03	g : 0.03	= : 0.03	a : 0.03	! : 0.03	h : 0.01	m : 0.01	f : 0.01	[ : 0.01	
m : 0.47	o : 0.15	l : 0.07	c : 0.05	n : 0.05	g : 0.03	a : 0.03	! : 0.01	f : 0.01	b : 0.01	= : 0.01	d : 0.01	i : 0.01	
m : 0.52	l : 0.16	o : 0.15	n : 0.09	a : 0.01	b : 0.01	i : 0.01	
m : 0.56	l : 0.18	o : 0.15	n : 0.09	
m : 0.54	o : 0.15	l : 0.11	a : 0.05	n : 0.05	d : 0.03	c : 0.03	
c : 0.33	d : 0.13	o : 0.11	m : 0.09	b : 0.05	] : 0.05	n : 0.05	= : 0.03	i : 0.01	g : 0.01	h : 0.01	a : 0.01	f : 0.01	l : 0.01	
c : 0.37	d : 0.16	b : 0.07	o : 0.07	i : 0.05	= : 0.03	m : 0.03	n : 0.03	a : 0.03	e : 0.01	g : 0.01	h : 0.01	] : 0.01	f : 0.01	
c : 0.41	d : 0.16	] : 0.09	i : 0.07	g : 0.03	= : 0.03	a : 0.03	2 : 0.03	b : 0.03	e : 0.01	h : 0.01	f : 0.01	
] : 0.24	c : 0.16	d : 0.15	2 : 0.09	i : 0.07	4 : 0.05	b : 0.05	g : 0.03	= : 0.03	e : 0.01	h : 0.01	3 : 0.01	f : 0.01	
c : 0.20	a : 0.11	2 : 0.09	i : 0.07	b : 0.07	d : 0.07	e : 0.05	] : 0.05	g : 0.05	4 : 0.05	= : 0.05	3 : 0.03	h : 0.01	f : 0.01	
2 : 0.22	c : 0.16	e : 0.07	i : 0.07	4 : 0.07	g : 0.05	d : 0.05	= : 0.05	a : 0.05	b : 0.03	3 : 0.03	] : 0.03	h : 0.01	f : 0.01	
2 : 0.26	c : 0.16	] : 0.09	i : 0.07	4 : 0.07	d : 0.07	e : 0.05	g : 0.05	= : 0.05	h : 0.01	b : 0.01	a : 0.01	3 : 0.01	
c : 0.24	a : 0.11	2 : 0.11	i : 0.09	= : 0.09	e : 0.07	] : 0.05	d : 0.05	b : 0.03	g : 0.03	4 : 0.03	h : 0.01	f : 0.01	
c : 0.26	] : 0.16	i : 0.09	= : 0.09	e : 0.07	2 : 0.05	4 : 0.05	b : 0.05	d : 0.05	f : 0.03	g : 0.03	
c : 0.26	= : 0.09	] : 0.07	f : 0.07	a : 0.07	i : 0.07	4 : 0.05	e : 0.05	b : 0.05	d : 0.05	g : 0.03	2 : 0.03	h : 0.01	3 : 0.01	
2 : 0.16	] : 0.13	c : 0.11	g : 0.07	f : 0.07	= : 0.07	4 : 0.05	i : 0.05	3 : 0.05	d : 0.05	e : 0.03	a : 0.03	: : 0.01	b : 0.01	h : 0.01	
2 : 0.15	g : 0.11	] : 0.11	c : 0.09	= : 0.09	e : 0.09	f : 0.07	d : 0.07	3 : 0.05	4 : 0.03	i : 0.03	h : 0.01	b : 0.01	a : 0.01	
g : 0.20	e : 0.16	f : 0.11	c : 0.09	= : 0.09	] : 0.07	i : 0.05	b : 0.05	d : 0.05	3 : 0.03	4 : 0.01	h : 0.01	
g : 0.24	e : 0.16	f : 0.13	= : 0.11	c : 0.11	i : 0.05	b : 0.05	] : 0.05	d : 0.03	h : 0.01	
g : 0.24	e : 0.18	f : 0.15	= : 0.09	] : 0.07	c : 0.07	i : 0.05	3 : 0.03	d : 0.03	h : 0.01	b : 0.01	
g : 0.24	e : 0.22	f : 0.13	= : 0.09	i : 0.07	3 : 0.07	] : 0.03	c : 0.03	d : 0.03	h : 0.01	2 : 0.01	
g : 0.22	e : 0.16	f : 0.13	= : 0.09	3 : 0.09	i : 0.05	d : 0.05	a : 0.03	c : 0.03	h : 0.01	G : 0.01	: : 0.01	2 : 0.01	] : 0.01	

#score	726.5504744275411
#seq	53
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_UTR_m1_run1.txt

#BEAR
ddd"""eeeee!!ccc[ddddnnnnndddd22ccc22eee	chr6:89791452-89791724(+)$1	272	176	216	12.8301
==========="""dddd!!ccclllccc333dddd22==	chr21:46914358-46914565(+)$1	207	100	140	14.2692
'ggggggg!!ggggggg[cccmmmmccc]ggggggggggg	chr2:239356625-239356976(+)$1	351	126	166	13.6367
fffff[ccc[bb[ccc[cccooooooccc]ccc22bb]cc	chr1:155658244-155658544(-)$1	300	192	232	13.4484
dddggggggg"""ccc[ddddmmmmdddd]cccggggggg	chr7:100424769-100425119(-)$1	350	285	325	12.6417
========[eeeee[bb[ccclllccc]bb]eeeee====	chr1:27022434-27022784(+)$1	350	260	300	12.5552
cc[=============!!cccnnnnnccc333========	chr14:39736575-39736846(+)$1	271	221	261	19.6811
ff[==========!!avvvvvvvvvvvvva22========	chrX:41193667-41193974(+)$1	307	178	218	13.9144
cc[iiiiiiiii!!ccc[aooooooa]ccciiiiiiiiic	chr11:3013160-3013478(-)$1	318	41	81	16.9149
++ffffff[a[bb[gggggggnnnnnggggggg]bb]a]f	chr9:116999159-116999368(+)$1	209	70	110	12.5722
ccc[bb!!dddd"""ccccccnnnnnccc]ccc333dddd	chr9:117026537-117026778(+)$1	241	170	210	14.8368
cccbb[ccc[===========mmmm===========]ccc	chr9:117053000-117053254(+)$1	254	63	103	16.9484
ccc[bb[ggggggg[eeeeennnnneeeee22ggggggg]	chr7:73007524-73007779(-)$1	255	95	135	14.0523
dd[ccc####==========qqqqqqqq==========cc	chr10:1094471-1094768(-)$1	297	97	137	14.5279
cccbb[ccc[===========mmmm===========]ccc	chr9:117053054-117053295(+)$1	241	9	49	16.9484
ddd[dddd[eeeee"""cccooooooccc333eeeee22d	chr9:116997782-116998031(+)$1	249	62	102	12.9465
FFFFF{A:=============nnnnn=============a	chr5:73935791-73936095(-)$1	304	23	63	13.7860
gggggggccc[==========qqqqqqqq==========c	chr10:1094606-1094927(-)$1	321	255	295	13.8790
++ccc"""dddd!!gggggggnnnnnggggggg22dddd3	chr9:117062826-117063065(+)$1	239	180	220	12.9153
ccc[bb[ggggggg[eeeeennnnneeeee22ggggggg]	chr7:73007579-73007833(-)$1	254	149	189	14.0523
dddccc[a[ccc"""ffffffnnnnnffffffccc]a]cc	chr9:117052426-117052697(+)$1	271	70	110	13.8073
hhhhh[ffffff!!cccrrrrrrrrrccc333ffffff]h	chr12:133405120-133405347(-)$1	227	77	117	11.7514
ddddccc[=============nnnnn=============2	chr5:73935919-73936194(-)$1	275	122	162	18.3441
da[=========="""fffffflllffffff]========	chr1:20234805-20235177(+)$1	372	117	157	15.7601
b!!eeeeeeeeee[iiiiiiiiillliiiiiiiii22eee	chr14:39736267-39736545(+)$1	278	195	235	12.9471
EEEccc####iiiiiiiiiooooooiiiiiiiii333ccc	chr14:39736370-39736642(+)$1	272	229	269	13.9510
ccc]bbbbiiiiiiiiirrrrrrrrriiiiiiiii]bbff	chr20:34252561-34252786(-)$1	225	107	147	13.6133
bb[bb[ccc####ccc[a[ddddllldddda]cccccc]b	chr7:104752932-104753200(-)$1	268	68	108	11.9556

#otherMatches

#Seq PSSM
CCUAGUCGGUGAAACGCGGAGACGGCCUCUAACGUCCCGC	chr6:89791452-89791724(+)$1	272	176	216	12.8301
GGAGAGCCGGGCUUCCGAGGACCCCCGGUAAGUCGGUCCC	chr21:46914358-46914565(+)$1	207	100	140	14.2692
GCUUGGGAUUGGGUCCUGCUGAAGCCAGGAGGGUCUUCCC	chr2:239356625-239356976(+)$1	351	126	166	13.6367
GGCUGGCUCGCAGGACGGCCGAAGGUGGUGGUUGGUGGGA	chr1:155658244-155658544(-)$1	300	192	232	13.4484
GACGCGGGGCCACACUUGGCGCCGCCGCCCGGUGCCCCGC	chr7:100424769-100425119(-)$1	350	285	325	12.6417
ccuccgccgccgccAGCCCGGAGCCUGAGCCggcggggcg	chr1:27022434-27022784(+)$1	350	260	300	12.5552
ACCGGCUUUGGGGUCUAAGCCGCCGUGGUCAGAGGUCCCG	chr14:39736575-39736846(+)$1	271	221	261	19.6811
AUGCGCGAAUCCCGACUGAUUAGUGACCUGGGGGGGUUUG	chrX:41193667-41193974(+)$1	307	178	218	13.9144
cggccgggcccggacgggcggguggggccgcggguccggc	chr11:3013160-3013478(-)$1	318	41	81	16.9149
CUAACCCCAGCCUGCUCUGGAUCUCUUCCAGGGGAGCCAG	chr9:116999159-116999368(+)$1	209	70	110	12.5722
GCCCUUCCUCACUCCUCCGACACUGGGUCAGGAAUCGUGA	chr9:117026537-117026778(+)$1	241	170	210	14.8368
CCCUCCUCUGCCUGCUUUCUUAACAGGGGGAGCAGGGAGA	chr9:117053000-117053254(+)$1	254	63	103	16.9484
GGUUUCCCCUGGGAGAGGCCAGGAGGGCCUGAUCCCAGGA	chr7:73007524-73007779(-)$1	255	95	135	14.0523
GGUGGCGGCGUUGGUCUCCCGAACUGGAGGGAGGCCGGGC	chr10:1094471-1094768(-)$1	297	97	137	14.5279
CCCUCCUCUGCCUGCUUUCUUAACAGGGGGAGCAGGGAGA	chr9:117053054-117053295(+)$1	241	9	49	16.9484
UCCAUUGUAACCUUCUUUGCUGGUGUGUACUUAGGGUGAA	chr9:116997782-116998031(+)$1	249	62	102	12.9465
CGGCUGCAGGGGUGUGUUCGCGAGGGGUGAGCGUGCUCCG	chr5:73935791-73936095(-)$1	304	23	63	13.7860
GGGUGGCGGCGUUGGUCUCCCGAACUGGAGGGAGGCCGGG	chr10:1094606-1094927(-)$1	321	255	295	13.8790
CUAGGCCCAAGGUUGGCCAGCCAUCAGCUGGCCUGUCUUC	chr9:117062826-117063065(+)$1	239	180	220	12.9153
GGUUUCCCCUGGGAGAGGCCAGGAGGGCCUGAUCCCAGGA	chr7:73007579-73007833(-)$1	254	149	189	14.0523
CCCCCAGGGCCUGCAGGGGCUGCCAGGGCCCCGGGGCGUG	chr9:117052426-117052697(+)$1	271	70	110	13.8073
CAGCGUGGCGGGACGGCCCCGUUCCAGUCACCCCCGCCUC	chr12:133405120-133405347(-)$1	227	77	117	11.7514
CGGCUGCAGGGGUGUGUUCGCGAGGGGUGAGCGUGCUCCG	chr5:73935919-73936194(-)$1	275	122	162	18.3441
CUGACUGUUAAUUAGGCCUGGCCUUGUUGGGAAGUUGAUA	chr1:20234805-20235177(+)$1	372	117	157	15.7601
GUCGGGAUGGGCAGCGUAGGCCUGUGAGGCCUGCGGGUGC	chr14:39736267-39736545(+)$1	278	195	235	12.9471
GCCGUUUAUUGUGGCCCCGACAGGCCGGGGUUACUGUGGC	chr14:39736370-39736642(+)$1	272	229	269	13.9510
AAGACUCCCGCAGCCCCUGAACGGGUGGGGCUGUGCGGGG	chr20:34252561-34252786(-)$1	225	107	147	13.6133
CUGUUGUACAAGGUGCGGUCCUGGAGCAGGUGGUGGUGGA	chr7:104752932-104753200(-)$1	268	68	108	11.9556

#DB
(((...(((((..(((.((((.....))))..)))..)))	chr6:89791452-89791724(+)$1	1	176	216	12.8301
(((((((((((...((((..(((...)))...))))..))	chr21:46914358-46914565(+)$1	1	100	140	14.2692
.(((((((..(((((((.(((....))).)))))))))))	chr2:239356625-239356976(+)$1	1	126	166	13.6367
(((((.(((.((.(((.(((......))).)))..)).))	chr1:155658244-155658544(-)$1	1	192	232	13.4484
)))(((((((...(((.((((....)))).))))))))))	chr7:100424769-100425119(-)$1	1	285	325	12.6417
((((((((.(((((.((.(((...))).)).)))))))))	chr1:27022434-27022784(+)$1	1	260	300	12.5552
((.(((((((((((((..(((.....)))...))))))))	chr14:39736575-39736846(+)$1	1	221	261	19.6811
((.((((((((((..(.............)..))))))))	chrX:41193667-41193974(+)$1	1	178	218	13.9144
((.(((((((((..(((.(......).)))))))))))))	chr11:3013160-3013478(-)$1	1	41	81	16.9149
..((((((.(.((.(((((((.....))))))).)).).)	chr9:116999159-116999368(+)$1	1	70	110	12.5722
(((.((..((((...((((((.....))).)))...))))	chr9:117026537-117026778(+)$1	1	170	210	14.8368
(((((.(((.(((((((((((....))))))))))).)))	chr9:117053000-117053254(+)$1	1	63	103	16.9484
(((.((.(((((((.(((((.....)))))..))))))).	chr7:73007524-73007779(-)$1	1	95	135	14.0523
((.(((....((((((((((........))))))))))))	chr10:1094471-1094768(-)$1	1	97	137	14.5279
(((((.(((.(((((((((((....))))))))))).)))	chr9:117053054-117053295(+)$1	1	9	49	16.9484
(((.((((.(((((...(((......)))...)))))..)	chr9:116997782-116998031(+)$1	1	62	102	12.9465
(((((.(.(((((((((((((.....)))))))))))))(	chr5:73935791-73936095(-)$1	1	23	63	13.7860
)))))))(((.((((((((((........)))))))))))	chr10:1094606-1094927(-)$1	1	255	295	13.8790
..(((...((((..(((((((.....)))))))..)))).	chr9:117062826-117063065(+)$1	1	180	220	12.9153
(((.((.(((((((.(((((.....)))))..))))))).	chr7:73007579-73007833(-)$1	1	149	189	14.0523
((((((.(.(((...((((((.....))))))))).).))	chr9:117052426-117052697(+)$1	1	70	110	13.8073
(((((.((((((..(((.........)))...)))))).)	chr12:133405120-133405347(-)$1	1	77	117	11.7514
))))(((.(((((((((((((.....))))))))))))).	chr5:73935919-73936194(-)$1	1	122	162	18.3441
((.((((((((((...((((((...)))))).))))))))	chr1:20234805-20235177(+)$1	1	117	157	15.7601
(..((((((((((.(((((((((...)))))))))..)))	chr14:39736267-39736545(+)$1	1	195	235	12.9471
)))(((....(((((((((......)))))))))...)))	chr14:39736370-39736642(+)$1	1	229	269	13.9510
))).))(((((((((((.........))))))))).))((	chr20:34252561-34252786(-)$1	1	107	147	13.6133
((.((.(((....(((.(.((((...))))).)))))).)	chr7:104752932-104753200(-)$1	1	68	108	11.9556

#PSSM
c : 0.28	d : 0.24	= : 0.07	f : 0.07	+ : 0.07	b : 0.07	' : 0.03	F : 0.03	g : 0.03	h : 0.03	E : 0.03	
c : 0.28	d : 0.21	= : 0.07	g : 0.07	f : 0.07	+ : 0.07	F : 0.03	h : 0.03	a : 0.03	! : 0.03	E : 0.03	b : 0.03	
c : 0.24	[ : 0.21	d : 0.17	= : 0.07	g : 0.07	f : 0.07	F : 0.03	h : 0.03	! : 0.03	E : 0.03	
= : 0.17	[ : 0.14	c : 0.14	g : 0.10	b : 0.10	f : 0.07	" : 0.03	i : 0.03	F : 0.03	h : 0.03	d : 0.03	e : 0.03	] : 0.03	
b : 0.24	= : 0.17	c : 0.17	g : 0.10	f : 0.07	" : 0.03	i : 0.03	d : 0.03	F : 0.03	h : 0.03	e : 0.03	
= : 0.17	[ : 0.17	b : 0.14	c : 0.14	g : 0.10	" : 0.07	i : 0.03	f : 0.03	d : 0.03	{ : 0.03	e : 0.03	
= : 0.17	c : 0.17	g : 0.10	[ : 0.10	e : 0.07	f : 0.07	# : 0.07	i : 0.03	! : 0.03	d : 0.03	A : 0.03	" : 0.03	b : 0.03	
= : 0.17	c : 0.17	g : 0.14	e : 0.07	f : 0.07	# : 0.07	i : 0.03	! : 0.03	d : 0.03	: : 0.03	" : 0.03	a : 0.03	[ : 0.03	b : 0.03	
= : 0.21	c : 0.17	[ : 0.14	g : 0.10	e : 0.07	i : 0.07	d : 0.07	# : 0.07	! : 0.03	f : 0.03	
= : 0.21	e : 0.14	[ : 0.10	g : 0.10	# : 0.10	i : 0.07	d : 0.07	c : 0.07	! : 0.03	a : 0.03	f : 0.03	
= : 0.32	e : 0.14	g : 0.10	i : 0.10	[ : 0.07	d : 0.07	b : 0.03	" : 0.03	c : 0.03	f : 0.03	# : 0.03	
= : 0.32	g : 0.10	e : 0.10	i : 0.10	" : 0.07	b : 0.07	d : 0.07	! : 0.03	c : 0.03	f : 0.03	# : 0.03	
= : 0.32	! : 0.14	" : 0.14	g : 0.10	e : 0.10	i : 0.07	[ : 0.03	b : 0.03	# : 0.03	
= : 0.24	c : 0.14	" : 0.14	! : 0.14	g : 0.10	e : 0.07	[ : 0.07	i : 0.07	
= : 0.24	c : 0.21	" : 0.14	g : 0.10	[ : 0.10	i : 0.10	d : 0.03	! : 0.03	
c : 0.24	= : 0.24	g : 0.10	i : 0.10	e : 0.07	" : 0.07	d : 0.03	b : 0.03	a : 0.03	f : 0.03	
= : 0.21	[ : 0.14	g : 0.10	c : 0.10	i : 0.10	e : 0.07	f : 0.07	d : 0.03	b : 0.03	! : 0.03	v : 0.03	" : 0.03	
= : 0.21	d : 0.10	[ : 0.10	c : 0.10	g : 0.07	e : 0.07	f : 0.07	r : 0.07	i : 0.07	! : 0.03	v : 0.03	a : 0.03	
c : 0.21	= : 0.21	d : 0.07	g : 0.07	e : 0.07	f : 0.07	r : 0.07	i : 0.07	! : 0.03	v : 0.03	a : 0.03	[ : 0.03	
c : 0.21	= : 0.21	d : 0.10	o : 0.07	g : 0.07	e : 0.07	f : 0.07	r : 0.07	! : 0.03	v : 0.03	i : 0.03	
c : 0.17	= : 0.17	o : 0.14	d : 0.10	g : 0.07	n : 0.07	f : 0.07	r : 0.07	v : 0.03	q : 0.03	i : 0.03	
n : 0.35	m : 0.14	o : 0.14	q : 0.07	r : 0.07	c : 0.03	l : 0.03	v : 0.03	f : 0.03	i : 0.03	d : 0.03	
n : 0.35	m : 0.14	o : 0.14	l : 0.07	q : 0.07	r : 0.07	c : 0.03	v : 0.03	i : 0.03	d : 0.03	
n : 0.35	l : 0.17	m : 0.14	o : 0.14	q : 0.07	r : 0.07	v : 0.03	
n : 0.35	l : 0.14	m : 0.14	o : 0.14	q : 0.07	r : 0.07	c : 0.03	v : 0.03	
n : 0.28	l : 0.10	c : 0.07	o : 0.07	= : 0.07	e : 0.07	q : 0.07	r : 0.07	d : 0.03	v : 0.03	a : 0.03	f : 0.03	i : 0.03	
c : 0.28	= : 0.14	d : 0.10	i : 0.10	g : 0.07	e : 0.07	q : 0.07	f : 0.07	v : 0.03	] : 0.03	
c : 0.28	= : 0.14	d : 0.10	i : 0.10	g : 0.07	e : 0.07	q : 0.07	f : 0.07	] : 0.03	v : 0.03	
c : 0.24	= : 0.17	d : 0.10	i : 0.10	g : 0.07	e : 0.07	f : 0.07	] : 0.03	b : 0.03	v : 0.03	q : 0.03	
= : 0.21	3 : 0.14	g : 0.10	] : 0.10	i : 0.10	d : 0.07	e : 0.07	f : 0.07	b : 0.03	a : 0.03	c : 0.03	
= : 0.21	2 : 0.14	3 : 0.14	i : 0.14	g : 0.10	c : 0.10	f : 0.07	] : 0.03	a : 0.03	
= : 0.21	2 : 0.14	3 : 0.14	i : 0.14	g : 0.10	c : 0.10	] : 0.07	e : 0.03	f : 0.03	
= : 0.32	c : 0.21	g : 0.17	i : 0.14	e : 0.07	d : 0.03	f : 0.03	
= : 0.32	g : 0.14	i : 0.14	c : 0.10	2 : 0.07	e : 0.07	d : 0.03	] : 0.03	3 : 0.03	f : 0.03	
= : 0.32	g : 0.14	c : 0.10	i : 0.10	2 : 0.07	e : 0.07	3 : 0.07	d : 0.03	b : 0.03	f : 0.03	
= : 0.32	g : 0.14	2 : 0.07	d : 0.07	b : 0.07	e : 0.07	3 : 0.07	] : 0.07	i : 0.03	f : 0.03	c : 0.03	
= : 0.28	g : 0.14	2 : 0.10	] : 0.10	b : 0.07	d : 0.07	i : 0.03	e : 0.03	a : 0.03	f : 0.03	3 : 0.03	c : 0.03	
= : 0.28	g : 0.14	c : 0.14	e : 0.07	2 : 0.07	] : 0.07	d : 0.07	i : 0.03	a : 0.03	f : 0.03	b : 0.03	
= : 0.28	c : 0.21	g : 0.14	] : 0.10	e : 0.07	d : 0.07	i : 0.03	2 : 0.03	f : 0.03	
c : 0.28	= : 0.17	e : 0.07	g : 0.07	f : 0.07	d : 0.07	] : 0.07	a : 0.03	3 : 0.03	h : 0.03	2 : 0.03	b : 0.03	

#score	399.48804526428927
#seq	28
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF656IDO_XRCC6_UTR_m2_run1.txt

#BEAR
cc[iiiiiiiii"""ccclllccc333iiiiiiiii]cc	chr12:46752578-46752831(-)$1	253	76	115	25.2526
gggg!!ffffff!!cccnnnnnccc22ffffffgggggg	chr8:22878691-22878949(-)$1	258	196	235	23.9095
iii"""a[dddd"""cccmmmmccc22dddd]a333iii	chr14:23779491-23779743(+)$1	252	189	228	26.9881

#otherMatches

#Seq PSSM
GUGCCUAGGGAAAAUUCCAAUGGAUGAUUUUCUGGGAGC	chr12:46752578-46752831(-)$1	253	76	115	25.2526
AUGGCUGACGCAUUAAGGUUUUCUUCUUGUGUCCUGUUC	chr8:22878691-22878949(-)$1	258	196	235	23.9095
CUAGAAUGUGGCAACGUAGUUGUGCUCGCCAGAACGUGG	chr14:23779491-23779743(+)$1	252	189	228	26.9881

#DB
((.(((((((((...(((...)))...))))))))).))	chr12:46752578-46752831(-)$1	1	76	115	25.2526
((((..((((((..(((.....)))..))))))))))))	chr8:22878691-22878949(-)$1	1	196	235	23.9095
(((...(.((((...(((....)))..)))).)...)))	chr14:23779491-23779743(+)$1	1	189	228	26.9881

#PSSM
c : 0.33	g : 0.33	i : 0.33	
c : 0.33	g : 0.33	i : 0.33	
[ : 0.33	g : 0.33	i : 0.33	
i : 0.33	g : 0.33	" : 0.33	
i : 0.33	! : 0.33	" : 0.33	
i : 0.33	! : 0.33	" : 0.33	
i : 0.33	f : 0.33	a : 0.33	
i : 0.33	f : 0.33	[ : 0.33	
i : 0.33	f : 0.33	d : 0.33	
i : 0.33	f : 0.33	d : 0.33	
i : 0.33	f : 0.33	d : 0.33	
i : 0.33	f : 0.33	d : 0.33	
" : 0.66	! : 0.33	
" : 0.66	! : 0.33	
" : 0.66	c : 0.33	
c : 1.00	
c : 1.00	
c : 0.66	n : 0.33	
l : 0.33	n : 0.33	m : 0.33	
l : 0.33	n : 0.33	m : 0.33	
l : 0.33	n : 0.33	m : 0.33	
c : 0.33	n : 0.33	m : 0.33	
c : 1.00	
c : 1.00	
c : 0.66	3 : 0.33	
2 : 0.66	3 : 0.33	
2 : 0.66	3 : 0.33	
i : 0.33	f : 0.33	d : 0.33	
i : 0.33	f : 0.33	d : 0.33	
i : 0.33	f : 0.33	d : 0.33	
i : 0.33	f : 0.33	d : 0.33	
i : 0.33	f : 0.33	] : 0.33	
i : 0.33	f : 0.33	a : 0.33	
i : 0.33	g : 0.33	3 : 0.33	
i : 0.33	g : 0.33	3 : 0.33	
i : 0.33	g : 0.33	3 : 0.33	
] : 0.33	g : 0.33	i : 0.33	
c : 0.33	g : 0.33	i : 0.33	
c : 0.33	g : 0.33	i : 0.33	

#score	76.15029118213329
#seq	3
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_UTR_m2_run1.txt

#BEAR
eeeee####eeeeellleeeee22eeee	chr4:151935881-151936114(-)$1	233	187	215	9.0014
d!!dddd[ddddmmmmdddd333dddd2	chr7:151851004-151851280(-)$1	276	30	58	9.3939
dddddd!!eeeeeooooooeeeee]ddd	chrX:53559721-53559955(-)$1	234	105	133	8.3301
eeeebbccc[cccnnnnnccc]ccc333	chr17:49232907-49233201(+)$1	294	250	278	8.6541
cc!!eeeee[ddddllldddd]eeeee4	chr19:10464509-10464769(-)$1	260	217	245	10.0695
dddd####ddddnnnnndddd22dddd:	chr3:184049157-184049443(+)$1	286	230	258	10.5533
cccdddd[ddddmmmmdddd22dddd33	chr16:2143584-2143838(-)$1	254	188	216	8.9035
fffff"""ddddnnnnnddddffffff]	chr4:122617916-122618139(-)$1	223	102	130	11.0121
#eeeeexxxxxxxxxxxxxxxeeeee44	chr3:184052986-184053202(+)$1	216	128	156	8.5786
eeedddd[ddddmmmmdddddddd]eee	chr1:43232518-43232794(-)$1	276	61	89	9.3058
eeeee[bb[ccclllccc]bb]eeeee]	chr22:22221688-22221981(-)$1	293	59	87	8.7611
#eeeeeddddcccmmmmccc]dddd]ee	chr6:56340880-56341168(-)$1	288	55	83	8.5865
G::eeeeeddddnnnnndddd]eeeee:	chr16:21854700-21854999(-)$1	299	78	106	9.5162
:eeeee[ccc[ammmma]ccc22eeeee	chr12:56552049-56552288(+)$1	239	33	61	8.6283
c"""cccddddoooooodddd]ccc333	chr5:102455923-102456269(+)$1	346	211	239	9.7692
cc[bb"""eeeeellleeeee4444bb]	chr1:146767277-146767512(+)$1	235	70	98	7.9616
#dddd####ddddmmmmdddddddd333	chr6:64282258-64282521(+)$1	263	115	143	8.9674
deeeee[a[bboooooobb]a]eeeee:	chr7:54826749-54827003(-)$1	254	169	197	8.8255
eeeeeccc[cccooooooccc]ccc]ee	chr17:35640067-35640330(-)$1	263	162	190	9.7666
gg!!dddd[cccooooooccc]dddd22	chr9:134357662-134357932(+)$1	270	35	63	9.0234
cceeeee[a!!bblllbb22a]eeeee]	chr11:119205166-119205465(+)$1	299	208	236	8.6924
:eeeee[cccooooooccc333eeeeee	chr1:43916003-43916269(+)$1	266	124	152	9.0561
cc!!eeeee[bbnnnnnbb]eeeee]cc	chr2:232576509-232576723(+)$1	214	171	199	9.3592
ffffff!!ddddmmmmddddffffff]b	chr2:153532960-153533239(-)$1	279	168	196	7.9639
[eeeee!!cccannnnna]ccceeeee]	chr2:209119561-209119837(-)$1	276	197	225	12.3166
accc[dddd!!annnnna22ddddccc]	chr19:36229594-36229855(+)$1	261	157	185	9.1242
%eeeee!!ddddnnnnndddd]eeeee5	chr3:13358733-13358959(-)$1	226	134	162	12.5542
ddd[dddd[cccnnnnnccc]dddd]dd	chr3:184033077-184033354(+)$1	277	1	29	9.4199
$$$$$eeeee[annnnna]eeeeeeeee	chr2:231729570-231729844(+)$1	274	134	162	9.5678
ee[ffffffcccnnnnnccc333fffff	chr3:184046322-184046618(+)$1	296	204	232	9.5438
!ffffffeeeeennnnneeeee]fffff	chr15:28501248-28501518(-)$1	270	181	209	9.2395
##dddd!!ddddmmmmdddddddddddd	chr7:94285765-94285993(+)$1	228	92	120	9.0014
!eeeee!!ddddmmmmdddd4444eeee	chr3:184045561-184045873(+)$1	312	274	302	11.1334
ddeeeee[ddddnnnnndddd]eeeee]	chr16:30711941-30712180(+)$1	239	45	73	13.1892
:eeeee[acccooooooccc]a]eeeee	chr14:90863424-90863682(+)$1	258	139	167	9.7135
[a[eeeeeddddnnnnndddd]eeeee]	chr2:201171076-201171362(+)$1	286	239	267	13.0505
H:eeeee!!cccnnnnnccc]eeeee::	chr6:56350051-56350334(-)$1	283	196	224	8.4154
dddd"""eeeeennnnneeeee333ddd	chr14:24679489-24679732(-)$1	243	176	204	9.9555
ffffff!!ddddllldddd22ffffff]	chr2:28974794-28975051(+)$1	257	226	254	8.3057
eeeeebb[ddddmmmmddddbb4444ee	chr7:156931546-156931873(+)$1	327	199	227	8.5299
ggggddddddddnnnnndddd22dddd:	chr1:156351969-156352191(+)$1	222	79	107	10.1254
dd:eeeee[cccooooooccc]eeeeeG	chr18:3247720-3247980(+)$1	260	219	247	8.9719
gggggg!!ddddlllddddggggggg]c	chr18:19192214-19192503(+)$1	289	142	170	8.9280
!!ccc"""ddddnnnnndddd333ccc2	chr12:62929290-62929591(+)$1	301	120	148	12.0712
[a[eeeee[ccclllccceeeee]a]ee	chr16:2143715-2144056(-)$1	341	103	131	9.0828
gg[ccc[eeeeennnnneeeee]ccc]g	chr17:53063403-53063733(+)$1	330	11	39	9.9924
!ffffff!!ddddmmmmdddd]ffffff	chr5:76987060-76987334(-)$1	274	89	117	8.2829
ddd####ddddannnnna]dddd333dd	chr9:113018592-113018888(-)$1	296	79	107	10.0056
%%%eeeeeddddnnnnndddd]eeeeed	chr16:30712010-30712252(+)$1	242	193	221	10.7794
ccc[bb!!ddddnnnnndddd]bb]ccc	chr9:35072312-35072576(-)$1	264	91	119	10.4261
fffccc[eeeeennnnneeeee22ccc]	chr20:48807460-48807731(+)$1	271	97	125	9.6774
eeeee$$$$$ccclllccc4444eeeee	chr5:75699069-75699318(+)$1	249	191	219	9.2010
eeeee"""bb[aooooooa]bb22eeee	chr12:56709504-56709710(-)$1	206	154	182	8.7589
gggggggeeeeeammmma]eeeee]ggg	chr9:91926079-91926332(+)$1	253	13	41	7.9235
eeeeeee[eeeeellleeeeeeeeee33	chr10:113943250-113943536(-)$1	286	218	246	10.0183

#otherMatches

#Seq PSSM
CAACUGCUUUGGGGUAUCUCCACAAGUU	chr4:151935881-151936114(-)$1	233	187	215	9.0014
UUUUUCUCUCUUUUUAAAGGUUCAGAAU	chr7:151851004-151851280(-)$1	276	30	58	9.3939
GCUUGGAAUGUGUUGAUGUGCACAGCUA	chrX:53559721-53559955(-)$1	234	105	133	8.3301
GUUCCCAUUUUGAUUCCUUCAUAGUAUA	chr17:49232907-49233201(+)$1	294	250	278	8.6541
CCCAUCUGGGGGGUGCUACCUGCUGGGG	chr19:10464509-10464769(-)$1	260	217	245	10.0695
GAUAGAGGUAGGUUUCUCCUGGAUAUCG	chr3:184049157-184049443(+)$1	286	230	258	10.5533
GCCUGUGAGCGCACGUGUGCCCCGCGUA	chr16:2143584-2143838(-)$1	254	188	216	8.9035
ACUUGGGUCCCACAGUCUGGGUGAGUGG	chr4:122617916-122618139(-)$1	223	102	130	11.0121
GUAAUUAUUAAACAUGAAUUCAAUUAAG	chr3:184052986-184053202(+)$1	216	128	156	8.5786
UGGGGCUUCGCCCGGGGGCGGGCCUUCG	chr1:43232518-43232794(-)$1	276	61	89	9.3058
GGCAGGCAAUCGGUCCGAGUGGCUGUCG	chr22:22221688-22221981(-)$1	293	59	87	8.7611
AUCAGCAGAGAUUAGCAAGUGCUCUGGC	chr6:56340880-56341168(-)$1	288	55	83	8.5865
UCUCCUCACUCUCACCAAGGGCUGAGGU	chr16:21854700-21854999(-)$1	299	78	106	9.5162
AGUCCUCUGAGGGUGACGUCAUCGGGAC	chr12:56552049-56552288(+)$1	239	33	61	8.6283
GACCUGAAUGGGCUUGACCAUCUCACAA	chr5:102455923-102456269(+)$1	346	211	239	9.7692
UUUUGGUACCUGUAAUAUAGGGAAACAC	chr1:146767277-146767512(+)$1	235	70	98	7.9616
GACGCAAGGGCGCCUCGGCGCGUGUAUU	chr6:64282258-64282521(+)$1	263	115	143	8.9674
CGGUCGGUACGGGCGAACGGGGCGGCCA	chr7:54826749-54827003(-)$1	254	169	197	8.8255
GGUGAGUUAUUAGCAUUAUGAAAGCAUC	chr17:35640067-35640330(-)$1	263	162	190	9.7666
UACUCUCUGGAUAAUCGAGUUGGGAGUU	chr9:134357662-134357932(+)$1	270	35	63	9.0234
UAGCUGGACUGAGAGCCUGCGCCCAGCU	chr11:119205166-119205465(+)$1	299	208	236	8.6924
ACCCUCUGGACCCGCCUCCUCUGAGGGA	chr1:43916003-43916269(+)$1	266	124	152	9.0561
gaagaagGUGAUGGUGAGUAGCCUUGUC	chr2:232576509-232576723(+)$1	214	171	199	9.3592
CAUUGUUGCUACUGUUGUAGAUAAUGAG	chr2:153532960-153533239(-)$1	279	168	196	7.9639
GGCCCCGGUCCCUGGCUGUGGAGGGGUG	chr2:209119561-209119837(-)$1	276	197	225	12.3166
CCCACAAUAAAGUCUGUCAAUGUUUGGA	chr19:36229594-36229855(+)$1	261	157	185	9.1242
GUGCUCUUUAGAAGUUGUCUGUGGGUGA	chr3:13358733-13358959(-)$1	226	134	162	12.5542
CGGCGGCAGGCGUAUCCUGUGUGCCCCU	chr3:184033077-184033354(+)$1	277	1	29	9.4199
AGAGGCUGCGGGGCGGACGCGCGGGCCG	chr2:231729570-231729844(+)$1	274	134	162	9.5678
CAUGGGGGAGCUGUUCAGGUAAGUCCCC	chr3:184046322-184046618(+)$1	296	204	232	9.5438
GUGCAGUCGGCCGCCCAGGCCGUGCUGC	chr15:28501248-28501518(-)$1	270	181	209	9.2395
CAUCCUUCCUGUCUUCGCAGAGGAGUCC	chr7:94285765-94285993(+)$1	228	92	120	9.0014
UUUCUAUCUCCUUUUUGGGACCCUUGGA	chr3:184045561-184045873(+)$1	312	274	302	11.1334
CCCCGGGCCCUGGAAGGCGGGUCCCGGU	chr16:30711941-30712180(+)$1	239	45	73	13.1892
UCGCUCGCACCAUGGUAGGUCGGGAGUG	chr14:90863424-90863682(+)$1	258	139	167	9.7135
GUGCUCCUGGUGAGUGACACCGAGGGGA	chr2:201171076-201171362(+)$1	286	239	267	13.0505
UGGUGAUGAAUCUGAUCGAUAAUCACAA	chr6:56350051-56350334(-)$1	283	196	224	8.4154
CAGGUAUGCAGGGUUGUUCUGUUGUCUU	chr14:24679489-24679732(-)$1	243	176	204	9.9555
CUCAUCACCCGGCUGCUGGAGGGUGAGU	chr2:28974794-28975051(+)$1	257	226	254	8.3057
GGCGAGGCAGGGCCGCCCCUCCAGUAUU	chr7:156931546-156931873(+)$1	327	199	227	8.5299
AUUCUCUUUCACUGUGUGUGACCAAGAA	chr1:156351969-156352191(+)$1	222	79	107	10.1254
CCAUCCCGGGGACCCGUCUCCGCGGGGG	chr18:3247720-3247980(+)$1	260	219	247	8.9719
GCUGUCGGACCCAGAGGGUGACGGCGCC	chr18:19192214-19192503(+)$1	289	142	170	8.9280
AUAUGCAAAGGUUCCCUGCCUCCCCAUU	chr12:62929290-62929591(+)$1	301	120	148	12.0712
GCUCAGCCUGCUCCUGGUGGCUGUGGCU	chr16:2143715-2144056(-)$1	341	103	131	9.0828
AAGUGUAUAUAAUGUUUUUAUGAACAGU	chr17:53063403-53063733(+)$1	330	11	39	9.9924
UGAAACUUUUCUCGUAUGGGGUGGUUUU	chr5:76987060-76987334(-)$1	274	89	117	8.2829
GAGAGAGCAAGCAGCGAGUCUUGAAGCU	chr9:113018592-113018888(-)$1	296	79	107	10.0056
GAAAGUGGGAAGAGUUCCUUCUCUGCUU	chr16:30712010-30712252(+)$1	242	193	221	10.7794
AGCCGCUUGCGGGUUUGUCGCCGCUGCU	chr9:35072312-35072576(-)$1	264	91	119	10.4261
GGCACCCGCGUUCAUGCAACGCCUGGUG	chr20:48807460-48807731(+)$1	271	97	125	9.6774
CGGCGAGAGGCGGGAUCCGAGCGCGCCG	chr5:75699069-75699318(+)$1	249	191	219	9.2010
GGACUGAAGCGAAAGCAAUGGCGGAGUC	chr12:56709504-56709710(-)$1	206	154	182	8.7589
UCGUUGGGACUGCGGUCGUUAGUCUCCG	chr9:91926079-91926332(+)$1	253	13	41	7.9235
CUCCGGUCUUCUCCCUGAGAAAUCGGUC	chr10:113943250-113943536(-)$1	286	218	246	10.0183

#DB
(((((....(((((...)))))..))))	chr4:151935881-151936114(-)$1	1	187	215	9.0014
(..((((.((((....))))...)))).	chr7:151851004-151851280(-)$1	1	30	58	9.3939
))((((..(((((......))))).)))	chrX:53559721-53559955(-)$1	1	105	133	8.3301
(((((((((.(((.....))).)))...	chr17:49232907-49233201(+)$1	1	250	278	8.6541
((..(((((.((((...)))).))))).	chr19:10464509-10464769(-)$1	1	217	245	10.0695
((((....((((.....))))..)))).	chr3:184049157-184049443(+)$1	1	230	258	10.5533
(((((((.((((....))))..))))..	chr16:2143584-2143838(-)$1	1	188	216	8.9035
(((((...((((.....)))))))))).	chr4:122617916-122618139(-)$1	1	102	130	11.0121
.(((((...............)))))..	chr3:184052986-184053202(+)$1	1	128	156	8.5786
(((((((.((((....)))))))).)))	chr1:43232518-43232794(-)$1	1	61	89	9.3058
(((((.((.(((...))).)).))))).	chr22:22221688-22221981(-)$1	1	59	87	8.7611
.((((((((((((....))).)))).))	chr6:56340880-56341168(-)$1	1	55	83	8.5865
(..(((((((((.....)))).))))).	chr16:21854700-21854999(-)$1	1	78	106	9.5162
.(((((.(((.(....).)))..)))))	chr12:56552049-56552288(+)$1	1	33	61	8.6283
(...(((((((......)))).)))...	chr5:102455923-102456269(+)$1	1	211	239	9.7692
((.((...(((((...)))))....)).	chr1:146767277-146767512(+)$1	1	70	98	7.9616
.((((....((((....))))))))...	chr6:64282258-64282521(+)$1	1	115	143	8.9674
)(((((.(.((......)).).))))).	chr7:54826749-54827003(-)$1	1	169	197	8.8255
((((((((.(((......))).))).))	chr17:35640067-35640330(-)$1	1	162	190	9.7666
((..((((.(((......))).))))..	chr9:134357662-134357932(+)$1	1	35	63	9.0234
(((((((.(..((...))..).))))).	chr11:119205166-119205465(+)$1	1	208	236	8.6924
.(((((.(((......)))...)))))(	chr1:43916003-43916269(+)$1	1	124	152	9.0561
((..(((((.((.....)).))))).))	chr2:232576509-232576723(+)$1	1	171	199	9.3592
((((((..((((....)))))))))).)	chr2:153532960-153533239(-)$1	1	168	196	7.9639
.(((((..((((.....).)))))))).	chr2:209119561-209119837(-)$1	1	197	225	12.3166
((((.((((..(.....)..))))))).	chr19:36229594-36229855(+)$1	1	157	185	9.1242
.(((((..((((.....)))).))))).	chr3:13358733-13358959(-)$1	1	134	162	12.5542
(((.((((.(((.....))).)))).))	chr3:184033077-184033354(+)$1	1	1	29	9.4199
.....(((((.(.....).)))))))))	chr2:231729570-231729844(+)$1	1	134	162	9.5678
((.(((((((((.....)))...)))))	chr3:184046322-184046618(+)$1	1	204	232	9.5438
.(((((((((((.....))))).)))))	chr15:28501248-28501518(-)$1	1	181	209	9.2395
..((((..((((....))))))))))))	chr7:94285765-94285993(+)$1	1	92	120	9.0014
.(((((..((((....))))....))))	chr3:184045561-184045873(+)$1	1	274	302	11.1334
(((((((.((((.....)))).))))).	chr16:30711941-30712180(+)$1	1	45	73	13.1892
.(((((.((((......))).).)))))	chr14:90863424-90863682(+)$1	1	139	167	9.7135
.(.(((((((((.....)))).))))).	chr2:201171076-201171362(+)$1	1	239	267	13.0505
).(((((..(((.....))).)))))..	chr6:56350051-56350334(-)$1	1	196	224	8.4154
((((...(((((.....)))))...)))	chr14:24679489-24679732(-)$1	1	176	204	9.9555
((((((..((((...))))..)))))).	chr2:28974794-28975051(+)$1	1	226	254	8.3057
(((((((.((((....))))))....))	chr7:156931546-156931873(+)$1	1	199	227	8.5299
))))((((((((.....))))..)))).	chr1:156351969-156352191(+)$1	1	79	107	10.1254
)).(((((.(((......))).))))))	chr18:3247720-3247980(+)$1	1	219	247	8.9719
((((((..((((...))))))))))).)	chr18:19192214-19192503(+)$1	1	142	170	8.9280
..(((...((((.....))))...))).	chr12:62929290-62929591(+)$1	1	120	148	12.0712
.(.(((((.(((...)))))))).).))	chr16:2143715-2144056(-)$1	1	103	131	9.0828
((.(((.(((((.....))))).))).)	chr17:53063403-53063733(+)$1	1	11	39	9.9924
.((((((..((((....)))).))))))	chr5:76987060-76987334(-)$1	1	89	117	8.2829
(((....(((((.....).))))...))	chr9:113018592-113018888(-)$1	1	79	107	10.0056
...(((((((((.....)))).))))))	chr16:30712010-30712252(+)$1	1	193	221	10.7794
(((.((..((((.....)))).)).)))	chr9:35072312-35072576(-)$1	1	91	119	10.4261
((((((.(((((.....)))))..))).	chr20:48807460-48807731(+)$1	1	97	125	9.6774
(((((.....(((...)))....)))))	chr5:75699069-75699318(+)$1	1	191	219	9.2010
(((((...((.(......).))..))))	chr12:56709504-56709710(-)$1	1	154	182	8.7589
(((((((((((((....).))))).)))	chr9:91926079-91926332(+)$1	1	13	41	7.9235
(((((((.(((((...))))))))))..	chr10:113943250-113943536(-)$1	1	218	246	10.0183

#PSSM
e : 0.18	d : 0.16	c : 0.12	g : 0.09	f : 0.07	# : 0.07	! : 0.07	: : 0.05	[ : 0.05	% : 0.03	G : 0.01	a : 0.01	$ : 0.01	H : 0.01	
e : 0.34	d : 0.14	c : 0.12	f : 0.10	g : 0.09	! : 0.03	: : 0.03	a : 0.03	" : 0.01	$ : 0.01	# : 0.01	% : 0.01	
e : 0.38	d : 0.12	f : 0.10	[ : 0.09	! : 0.07	c : 0.07	g : 0.05	: : 0.03	" : 0.01	$ : 0.01	% : 0.01	
e : 0.45	d : 0.14	f : 0.10	c : 0.07	! : 0.05	g : 0.05	[ : 0.03	" : 0.01	b : 0.01	$ : 0.01	# : 0.01	
e : 0.47	d : 0.16	f : 0.10	c : 0.07	b : 0.05	# : 0.03	g : 0.03	[ : 0.01	$ : 0.01	" : 0.01	
e : 0.38	d : 0.16	" : 0.09	f : 0.09	# : 0.07	c : 0.07	b : 0.05	g : 0.03	[ : 0.01	$ : 0.01	
e : 0.21	! : 0.16	d : 0.14	[ : 0.10	" : 0.09	# : 0.07	c : 0.05	f : 0.05	b : 0.03	x : 0.01	$ : 0.01	g : 0.01	
e : 0.23	! : 0.20	[ : 0.12	d : 0.12	c : 0.07	" : 0.07	# : 0.05	a : 0.03	x : 0.01	b : 0.01	f : 0.01	$ : 0.01	
d : 0.41	e : 0.20	[ : 0.12	c : 0.09	# : 0.03	! : 0.03	x : 0.01	a : 0.01	f : 0.01	$ : 0.01	b : 0.01	
d : 0.43	c : 0.21	e : 0.18	[ : 0.05	b : 0.03	! : 0.03	x : 0.01	$ : 0.01	
d : 0.43	c : 0.23	e : 0.16	[ : 0.05	b : 0.03	! : 0.03	x : 0.01	o : 0.01	
d : 0.40	c : 0.20	e : 0.16	a : 0.10	o : 0.07	b : 0.03	x : 0.01	
n : 0.40	m : 0.14	o : 0.14	e : 0.07	l : 0.07	c : 0.05	d : 0.05	x : 0.01	b : 0.01	a : 0.01	
n : 0.41	m : 0.21	o : 0.16	l : 0.14	e : 0.01	d : 0.01	x : 0.01	
n : 0.41	m : 0.21	l : 0.18	o : 0.16	x : 0.01	
n : 0.41	m : 0.21	o : 0.16	l : 0.10	c : 0.03	d : 0.03	x : 0.01	
n : 0.41	d : 0.16	o : 0.14	c : 0.07	m : 0.07	l : 0.03	e : 0.03	x : 0.01	a : 0.01	b : 0.01	
d : 0.41	c : 0.16	e : 0.12	o : 0.09	a : 0.09	b : 0.05	n : 0.01	x : 0.01	] : 0.01	
d : 0.41	c : 0.21	e : 0.14	] : 0.09	b : 0.03	2 : 0.03	o : 0.01	x : 0.01	a : 0.01	
d : 0.40	e : 0.20	c : 0.20	] : 0.05	2 : 0.05	x : 0.01	b : 0.01	3 : 0.01	g : 0.01	4 : 0.01	
d : 0.32	e : 0.21	c : 0.10	] : 0.07	3 : 0.05	b : 0.05	2 : 0.03	a : 0.03	4 : 0.03	x : 0.01	f : 0.01	g : 0.01	
] : 0.29	e : 0.23	d : 0.12	3 : 0.07	2 : 0.07	f : 0.05	4 : 0.05	b : 0.03	c : 0.01	a : 0.01	g : 0.01	
e : 0.36	d : 0.16	2 : 0.10	3 : 0.07	f : 0.07	4 : 0.07	c : 0.05	] : 0.05	g : 0.01	b : 0.01	
e : 0.40	d : 0.20	f : 0.10	c : 0.07	2 : 0.05	4 : 0.05	3 : 0.05	g : 0.01	] : 0.01	b : 0.01	
e : 0.41	d : 0.16	c : 0.12	f : 0.10	] : 0.07	4 : 0.03	3 : 0.03	g : 0.01	a : 0.01	
e : 0.41	d : 0.14	f : 0.10	] : 0.09	c : 0.09	3 : 0.07	g : 0.03	b : 0.01	4 : 0.01	
e : 0.43	d : 0.14	3 : 0.09	f : 0.09	c : 0.09	] : 0.05	4 : 0.01	b : 0.01	2 : 0.01	: : 0.01	g : 0.01	
e : 0.23	] : 0.18	d : 0.10	3 : 0.09	: : 0.09	2 : 0.05	c : 0.05	f : 0.05	4 : 0.03	g : 0.03	b : 0.01	5 : 0.01	G : 0.01	

#score	525.9881692288183
#seq	55
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_transcript_m3_run2.txt

#BEAR
!!eeeee%%%%%%cccyyyyyyyyyyyyyyyyccc77777	chrM:1441-1652(+)$1	211	61	101	25.4335
:ddddlllddddeeeee^^^^^^^^^^^^^^^^^^^^^^^	chrM:12181-12413(+)$1	232	123	163	20.6409
$$$$$ffffff"""cccuuuuuuuuuuuuccc333fffff	chr12:123994385-123994676(-)$1	291	132	172	23.9187
ggggg[dddd####ddddtttttttttttdddd333dddd	chr14:21731679-21731902(-)$1	223	174	214	23.7358
[dddd"""ddddeeeee^^^^^^^^^^^^^^^^^^eeeee	chr3:160232595-160232807(-)$1	212	43	83	21.7327
""eeeee[ddddeeeeeuuuuuuuuuuuueeeee4444dd	chr3:186504485-186504698(+)$1	213	89	129	31.2332
!!eeeee%%%%%%cccyyyyyyyyyyyyyyyyccc77777	chrM:1425-1641(+)$1	216	77	117	25.4335
::eeeee[ccc^^^^^^^^^^^^^^^^^^^^^ccc22eee	chr4:83816906-83817165(-)$1	259	33	73	21.0929
a[iiiiiiiii"""bbvvvvvvvvvvvvvbb4444iiiii	chr3:197243866-197244164(-)$1	298	122	162	25.9084
ebb[ccc"""gggggggtttttttttttggggggg]ccc]	chrX:132669837-132670063(-)$1	226	152	192	22.6091
[a[ggggggg!!eeeeeuuuuuuuuuuuueeeee4444gg	chr14:94908788-94909044(-)$1	256	57	97	29.0497
gffffff[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr3:160232857-160233086(-)$1	229	50	90	22.4845
eeee[bb"""ddddbbvvvvvvvvvvvvvbb]dddd333b	chr12:123998110-123998381(-)$1	271	104	144	25.2221
:eeeee!!dddd[cccxxxxxxxxxxxxxxxccc333ddd	chr8:9629648-9629882(+)$1	234	8	48	24.3352
!ccc!!bb!!cccddddvvvvvvvvvvvvvdddd]ccc]b	chr8:9628306-9628679(+)$1	373	187	227	24.0327
ggggccc####eeeeevvvvvvvvvvvvveeeee55555c	chr22:35740147-35740478(+)$1	331	39	79	26.2287
""eeeee[ddddeeeeeuuuuuuuuuuuueeeee4444dd	chr3:186504450-186504655(+)$1	205	124	164	31.2332
""eeeee[ddddeeeeeuuuuuuuuuuuueeeee4444dd	chr3:186504436-186504642(+)$1	206	138	178	31.2332
""eeeee[ddddeeeeeuuuuuuuuuuuueeeee4444dd	chr3:186504455-186504661(+)$1	206	119	159	31.2332
""eeeee[ddddeeeeeuuuuuuuuuuuueeeee4444dd	chr3:186504432-186504636(+)$1	204	142	182	31.2332
E:iiiiiiiii"""bbvvvvvvvvvvvvvbb4444iiiii	chr3:197243781-197244066(-)$1	285	24	64	23.9204
""eeeee[ddddeeeeeuuuuuuuuuuuueeeee4444dd	chr3:186504461-186504670(+)$1	209	113	153	31.2332
ebb[ccc"""gggggggtttttttttttggggggg]ccc]	chrX:132669812-132670037(-)$1	225	126	166	22.6091
!!eeeee%%%%%%cccyyyyyyyyyyyyyyyyccc77777	chr5:79946914-79947191(-)$1	277	155	195	25.4335
cceeeee!!ffffffvvvvvvvvvvvvvffffff4444ee	chr14:50235029-50235305(+)$1	276	12	52	25.5154
ccc:hhhhhhhh!!cccuuuuuuuuuuuuccc]hhhhhhh	chr22:35738410-35738662(+)$1	252	147	187	19.8254
""eeeee[ddddeeeeeuuuuuuuuuuuueeeee4444dd	chr3:186504442-186504650(+)$1	208	132	172	31.2332
ffffffffffff[ccc^^^^^^^^^^^^^^^^^^^^^^cc	chr3:32933418-32933652(+)$1	234	113	153	21.5167
!!eeeee"""dddd!!bbtttttttttttbb22dddd22e	chr17:165316-165585(-)$1	269	144	184	24.1707
==========[dddd^^^^^^^^^^^^^^^^^^^^^^^dd	chr1:8651552-8651798(-)$1	246	21	61	23.6905

#otherMatches

#Seq PSSM
AAGUAUACUUCAAAGGACAUUUAACUAAAACCCCUACGCA	chrM:1441-1652(+)$1	211	61	101	25.4335
CCAAAAAUUUUGGUGCAACUCCAAAUAAAAGUAAUAACCA	chrM:12181-12413(+)$1	232	123	163	20.6409
CAUCGGGAGCCCCUGCCCCACACAUGCCAGGCCUCGGCUC	chr12:123994385-123994676(-)$1	291	132	172	23.9187
GGAGGAGGAGCCUUUUAGCCUCUCAUAAACUGACCUCUCU	chr14:21731679-21731902(-)$1	223	174	214	23.7358
CUCACCUAACUAGCCUGGCACCCUAAAAUCUCUAACAGGU	chr3:160232595-160232807(-)$1	212	43	83	21.7327
UAAAGACUGGGGUGGACCUCUUUCUUAAUGUCCAAUGUCC	chr3:186504485-186504698(+)$1	213	89	129	31.2332
AAGUAUACUUCAAAGGACAUUUAACUAAAACCCCUACGCA	chrM:1425-1641(+)$1	216	77	117	25.4335
AAGAGCUAAGCAAUGAGAAUCUUACAACUAGAGCUGAAGU	chr4:83816906-83817165(-)$1	259	33	73	21.0929
GGUGGAGGAGUGAGUGAGACAAACAGACCCAGGAGGCUUC	chr3:197243866-197244164(-)$1	298	122	162	25.9084
AUCAAGUUGUGCCAAAUUAUUCUCCUAUGUUUGGCUGCUA	chrX:132669837-132670063(-)$1	226	152	192	22.6091
AGCUUACUCUUCCUGGGAAAAGUUGUCAACCCAGUUGCAG	chr14:94908788-94909044(-)$1	256	57	97	29.0497
UUUUGGCUCUCUUGGAAAUGAUGAAAUAGAGAUAAUUGGG	chr3:160232857-160233086(-)$1	229	50	90	22.4845
UUUUCCAAAGCACUCUUGUACUUUCUCUUAGCAGUGACCU	chr12:123998110-123998381(-)$1	271	104	144	25.2221
acccauuauuagaccaggcaagaauuauuaauggaugcua	chr8:9629648-9629882(+)$1	234	8	48	24.3352
gguaagaaagacucuaaggguggacugaaauuggaaguau	chr8:9628306-9628679(+)$1	373	187	227	24.0327
CACCCAGAUGGGAGGCGGCUGCGGGAAAAGCCUCAGUGAC	chr22:35740147-35740478(+)$1	331	39	79	26.2287
UAAAGACUGGGGUGGACCUCUUUCUUAAUGUCCAAUGUCC	chr3:186504450-186504655(+)$1	205	124	164	31.2332
UAAAGACUGGGGUGGACCUCUUUCUUAAUGUCCAAUGUCC	chr3:186504436-186504642(+)$1	206	138	178	31.2332
UAAAGACUGGGGUGGACCUCUUUCUUAAUGUCCAAUGUCC	chr3:186504455-186504661(+)$1	206	119	159	31.2332
UAAAGACUGGGGUGGACCUCUUUCUUAAUGUCCAAUGUCC	chr3:186504432-186504636(+)$1	204	142	182	31.2332
GGUGGAGGAGUGAGUGAGACAAACAGACCCAGGAGGCUUC	chr3:197243781-197244066(-)$1	285	24	64	23.9204
UAAAGACUGGGGUGGACCUCUUUCUUAAUGUCCAAUGUCC	chr3:186504461-186504670(+)$1	209	113	153	31.2332
AUCAAGUUGUGCCAAAUUAUUCUCCUAUGUUUGGCUGCUA	chrX:132669812-132670037(-)$1	225	126	166	22.6091
AAGUAUACUUCAAAGGACAUUUAACUAAAACCCCUGCGCA	chr5:79946914-79947191(-)$1	277	155	195	25.4335
CAGGCGGCAGAGAGGCCUCAACGCCGUCCCUUUCGCCACC	chr14:50235029-50235305(+)$1	276	12	52	25.5154
GGAGAGAGUUGAGAAGCUUUGUUUAGUUUGCUGUCAGCUC	chr22:35738410-35738662(+)$1	252	147	187	19.8254
UAAAGACUGGGGUGGACCUCUUUCUUAAUGUCCAAUGUCC	chr3:186504442-186504650(+)$1	208	132	172	31.2332
GCCUGUGAAGUGAUAAUUUCUAUCUACCUCAUAAAUCUUU	chr3:32933418-32933652(+)$1	234	113	153	21.5167
AGGGACUACAGGUCAGUGGAGGUGGAGUACAGGGACUAGA	chr17:165316-165585(-)$1	269	144	184	24.1707
AUUUGGAGUUGGCUUAGACAGGUUUGAAAAGGAGAGAAAA	chr1:8651552-8651798(-)$1	246	21	61	23.6905

#DB
..(((((......(((................))).....	chrM:1441-1652(+)$1	1	61	101	25.4335
.((((...))))(((((.......................	chrM:12181-12413(+)$1	1	123	163	20.6409
.....((((((...(((............)))...)))))	chr12:123994385-123994676(-)$1	1	132	172	23.9187
(((((.((((....((((...........))))...))))	chr14:21731679-21731902(-)$1	1	174	214	23.7358
.((((...(((((((((..................)))))	chr3:160232595-160232807(-)$1	1	43	83	21.7327
..(((((.(((((((((............)))))....))	chr3:186504485-186504698(+)$1	1	89	129	31.2332
..(((((......(((................))).....	chrM:1425-1641(+)$1	1	77	117	25.4335
..(((((.(((.....................)))..)))	chr4:83816906-83817165(-)$1	1	33	73	21.0929
(.(((((((((...((.............))....)))))	chr3:197243866-197244164(-)$1	1	122	162	25.9084
(((.(((...(((((((...........))))))).))).	chrX:132669837-132670063(-)$1	1	152	192	22.6091
.(.(((((((..(((((............)))))....))	chr14:94908788-94909044(-)$1	1	57	97	29.0497
(((((((.(((..........................)))	chr3:160232857-160233086(-)$1	1	50	90	22.4845
((((.((...((((((.............)).))))...)	chr12:123998110-123998381(-)$1	1	104	144	25.2221
.(((((..((((.(((...............)))...)))	chr8:9629648-9629882(+)$1	1	8	48	24.3352
.(((..((..(((((((.............)))).))).)	chr8:9628306-9628679(+)$1	1	187	227	24.0327
(((((((....(((((.............))))).....)	chr22:35740147-35740478(+)$1	1	39	79	26.2287
..(((((.(((((((((............)))))....))	chr3:186504450-186504655(+)$1	1	124	164	31.2332
..(((((.(((((((((............)))))....))	chr3:186504436-186504642(+)$1	1	138	178	31.2332
..(((((.(((((((((............)))))....))	chr3:186504455-186504661(+)$1	1	119	159	31.2332
..(((((.(((((((((............)))))....))	chr3:186504432-186504636(+)$1	1	142	182	31.2332
(.(((((((((...((.............))....)))))	chr3:197243781-197244066(-)$1	1	24	64	23.9204
..(((((.(((((((((............)))))....))	chr3:186504461-186504670(+)$1	1	113	153	31.2332
(((.(((...(((((((...........))))))).))).	chrX:132669812-132670037(-)$1	1	126	166	22.6091
..(((((......(((................))).....	chr5:79946914-79947191(-)$1	1	155	195	25.4335
(((((((..((((((.............))))))....))	chr14:50235029-50235305(+)$1	1	12	52	25.5154
))).((((((((..(((............))).)))))))	chr22:35738410-35738662(+)$1	1	147	187	19.8254
..(((((.(((((((((............)))))....))	chr3:186504442-186504650(+)$1	1	132	172	31.2332
((((((((((((.(((......................))	chr3:32933418-32933652(+)$1	1	113	153	21.5167
..(((((...((((..((...........))..))))..)	chr17:165316-165585(-)$1	1	144	184	24.1707
((((((((((.((((.......................))	chr1:8651552-8651798(-)$1	1	21	61	23.6905

#PSSM
" : 0.23	! : 0.16	: : 0.10	g : 0.10	e : 0.10	[ : 0.06	c : 0.06	$ : 0.03	a : 0.03	E : 0.03	f : 0.03	= : 0.03	
" : 0.23	! : 0.13	c : 0.10	d : 0.06	g : 0.06	: : 0.06	b : 0.06	f : 0.06	e : 0.06	$ : 0.03	[ : 0.03	a : 0.03	= : 0.03	
e : 0.49	d : 0.06	g : 0.06	i : 0.06	b : 0.06	f : 0.06	c : 0.06	$ : 0.03	[ : 0.03	= : 0.03	
e : 0.49	g : 0.10	d : 0.06	i : 0.06	[ : 0.06	f : 0.06	$ : 0.03	c : 0.03	: : 0.03	= : 0.03	
e : 0.46	c : 0.10	d : 0.06	g : 0.06	i : 0.06	f : 0.06	$ : 0.03	[ : 0.03	! : 0.03	h : 0.03	= : 0.03	
e : 0.46	f : 0.10	c : 0.10	i : 0.06	l : 0.03	[ : 0.03	" : 0.03	g : 0.03	b : 0.03	! : 0.03	h : 0.03	= : 0.03	
e : 0.43	f : 0.10	c : 0.10	i : 0.06	b : 0.06	l : 0.03	d : 0.03	" : 0.03	g : 0.03	! : 0.03	h : 0.03	= : 0.03	
[ : 0.30	" : 0.16	% : 0.10	f : 0.06	i : 0.06	! : 0.06	l : 0.03	d : 0.03	g : 0.03	b : 0.03	# : 0.03	h : 0.03	= : 0.03	
d : 0.36	" : 0.13	% : 0.10	f : 0.06	c : 0.06	i : 0.06	! : 0.06	g : 0.03	# : 0.03	h : 0.03	= : 0.03	
d : 0.36	" : 0.13	% : 0.10	f : 0.10	c : 0.06	i : 0.06	g : 0.03	! : 0.03	# : 0.03	h : 0.03	= : 0.03	
d : 0.39	% : 0.10	f : 0.10	c : 0.10	# : 0.06	i : 0.06	g : 0.06	! : 0.03	h : 0.03	[ : 0.03	
d : 0.43	% : 0.10	" : 0.10	^ : 0.06	g : 0.06	f : 0.06	# : 0.03	! : 0.03	c : 0.03	e : 0.03	h : 0.03	
e : 0.36	% : 0.10	" : 0.10	d : 0.10	^ : 0.06	g : 0.06	[ : 0.06	# : 0.03	c : 0.03	f : 0.03	! : 0.03	
e : 0.36	c : 0.16	d : 0.13	" : 0.10	^ : 0.06	g : 0.06	# : 0.03	f : 0.03	! : 0.03	
e : 0.36	c : 0.23	d : 0.10	b : 0.10	^ : 0.06	g : 0.06	f : 0.03	! : 0.03	
e : 0.36	c : 0.23	^ : 0.10	b : 0.10	d : 0.06	g : 0.06	v : 0.03	! : 0.03	
e : 0.33	v : 0.16	^ : 0.13	y : 0.10	c : 0.06	d : 0.06	g : 0.06	x : 0.03	b : 0.03	
u : 0.33	^ : 0.19	v : 0.19	y : 0.10	t : 0.06	d : 0.03	x : 0.03	b : 0.03	
u : 0.33	^ : 0.19	v : 0.19	t : 0.13	y : 0.10	x : 0.03	
u : 0.33	^ : 0.19	v : 0.19	t : 0.13	y : 0.10	x : 0.03	
u : 0.33	^ : 0.19	v : 0.19	t : 0.13	y : 0.10	x : 0.03	
u : 0.33	^ : 0.19	v : 0.19	t : 0.13	y : 0.10	x : 0.03	
u : 0.33	^ : 0.19	v : 0.19	t : 0.13	y : 0.10	x : 0.03	
u : 0.33	^ : 0.19	v : 0.19	t : 0.13	y : 0.10	x : 0.03	
u : 0.33	^ : 0.19	v : 0.19	t : 0.13	y : 0.10	x : 0.03	
u : 0.33	^ : 0.19	v : 0.19	t : 0.13	y : 0.10	x : 0.03	
u : 0.33	^ : 0.19	v : 0.19	t : 0.13	y : 0.10	x : 0.03	
u : 0.33	^ : 0.19	v : 0.19	t : 0.13	y : 0.10	x : 0.03	
u : 0.33	^ : 0.19	v : 0.16	y : 0.10	t : 0.06	g : 0.06	x : 0.03	f : 0.03	
e : 0.30	^ : 0.19	b : 0.13	y : 0.10	c : 0.06	g : 0.06	d : 0.03	x : 0.03	v : 0.03	f : 0.03	
e : 0.30	^ : 0.19	b : 0.13	y : 0.10	c : 0.06	d : 0.06	g : 0.06	x : 0.03	f : 0.03	
e : 0.30	^ : 0.19	y : 0.10	c : 0.10	d : 0.06	4 : 0.06	g : 0.06	] : 0.03	f : 0.03	2 : 0.03	
e : 0.30	c : 0.16	^ : 0.16	d : 0.10	4 : 0.06	g : 0.06	3 : 0.03	f : 0.03	] : 0.03	2 : 0.03	
e : 0.30	c : 0.16	^ : 0.16	d : 0.10	3 : 0.06	4 : 0.06	g : 0.06	f : 0.03	h : 0.03	
4 : 0.36	^ : 0.16	c : 0.13	3 : 0.10	g : 0.06	d : 0.06	] : 0.03	5 : 0.03	h : 0.03	
4 : 0.30	^ : 0.13	7 : 0.10	3 : 0.06	i : 0.06	] : 0.06	d : 0.06	f : 0.03	e : 0.03	2 : 0.03	c : 0.03	5 : 0.03	h : 0.03	
4 : 0.30	^ : 0.13	7 : 0.10	c : 0.10	d : 0.06	i : 0.06	3 : 0.06	f : 0.03	e : 0.03	2 : 0.03	5 : 0.03	h : 0.03	
4 : 0.30	c : 0.13	7 : 0.10	^ : 0.10	d : 0.06	e : 0.06	i : 0.06	f : 0.03	3 : 0.03	5 : 0.03	h : 0.03	2 : 0.03	
d : 0.33	c : 0.13	7 : 0.10	e : 0.10	i : 0.06	^ : 0.03	f : 0.03	g : 0.03	3 : 0.03	] : 0.03	5 : 0.03	h : 0.03	2 : 0.03	
d : 0.33	e : 0.13	7 : 0.10	c : 0.10	i : 0.06	] : 0.06	b : 0.06	^ : 0.03	f : 0.03	g : 0.03	h : 0.03	

#score	767.1739073891396
#seq	30
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_UTR_m2_run1.txt

#BEAR
ddddmmmmdddd	chr11:75111706-75111930(+)$1	224	49	61	5.9646
eeennnnneeee	chr6:32942369-32942572(+)$1	203	82	94	7.4934
ddddmmmmdddd	chr11:75111730-75111939(+)$1	209	25	37	5.9646
dddnnnnndddd	chr22:19711290-19711563(+)$1	273	103	115	8.9660
cccnnnnnccc]	chr1:38464955-38465202(-)$1	247	216	228	6.5594
cccnnnnnccc]	chr8:48874560-48874774(+)$1	214	123	135	6.5594
dddnnnnndddd	chr13:28009666-28009905(+)$1	239	164	176	8.9660
dddooooooddd	chr9:19378810-19379016(-)$1	206	157	169	6.9259
eeennnnneeee	chr6:32942372-32942577(+)$1	205	79	91	7.4934
dddnnnnndddd	chr1:118069877-118070105(+)$1	228	123	135	8.9660
dddnnnnndddd	chr6:32942411-32942625(+)$1	214	42	54	8.9660
dddooooooddd	chr11:77780878-77781164(-)$1	286	263	275	6.9259
eeennnnneeee	chr9:19378766-19378983(-)$1	217	109	121	7.4934
dddooooooddd	chr6:4115994-4116215(-)$1	221	183	195	6.9259
cccnnnnnccc2	chr1:38471025-38471283(-)$1	258	101	113	6.3524
eeennnnneeee	chr1:28176880-28177142(+)$1	262	152	164	7.4934
dddooooooddd	chr22:38864098-38864346(+)$1	248	57	69	6.9259
cccnnnnnccca	chr1:110134878-110135128(+)$1	250	160	172	6.5724
ddddmmmmdddd	chr4:122744697-122744924(-)$1	227	5	17	5.9646
eeeooooooeee	chr1:27272637-27272957(+)$1	320	3	15	5.6367
dddooooooddd	chr9:19378796-19379003(-)$1	207	144	156	6.9259
eeennnnneeee	chr9:19378710-19378941(-)$1	231	67	79	7.4934
ddddmmmmdddd	chr13:100215249-100215458(+)$1	209	24	36	5.9646
[ddddllldddd	chr15:69698750-69698998(+)$1	248	84	96	5.8186
dddnnnnndddd	chr5:64018231-64018453(-)$1	222	184	196	8.9660
dddnnnnndddd	chr17:79524988-79525212(-)$1	224	87	99	8.9660
dddooooooddd	chr11:86048369-86048676(+)$1	307	12	24	6.9259
ddddllldddde	chr18:55268734-55268982(-)$1	248	11	23	5.9025
ddddmmmmdddd	chr11:75111739-75111951(+)$1	212	16	28	5.9646
cccnnnnnccc7	chr19:47724375-47724622(-)$1	247	98	110	6.0268
eeennnnneeee	chr9:19378749-19378959(-)$1	210	85	97	7.4934
ddddmmmmdddd	chr11:75111703-75111906(+)$1	203	52	64	5.9646
[ddddllldddd	chr2:97260523-97260802(-)$1	279	28	40	5.8186
dddnnnnndddd	chr4:84393290-84393535(-)$1	245	84	96	8.9660
cccnnnnncccd	chr12:56705012-56705257(-)$1	245	90	102	7.0259
eeeooooooeee	chr16:70514461-70514718(-)$1	257	33	45	5.6367
eeennnnneeee	chr9:19378783-19378993(-)$1	210	119	131	7.4934
dddnnnnndddd	chr22:22221752-22221964(-)$1	212	187	199	8.9660
[ddddllldddd	chr9:139760553-139760830(-)$1	277	46	58	5.8186
dddnnnnndddd	chrX:30885210-30885436(-)$1	226	91	103	8.9660
eeennnnneeee	chr16:70514518-70514724(-)$1	206	153	165	7.4934
eeennnnneeee	chr9:19378803-19379010(-)$1	207	136	148	7.4934
dddnnnnndddd	chr12:25260648-25260895(+)$1	247	154	166	8.9660
ddddmmmmdddd	chr1:47130830-47131038(-)$1	208	138	150	5.9646
eeennnnneeee	chr9:19378741-19378949(-)$1	208	75	87	7.4934
ddddmmmmdddd	chr7:5270938-5271220(+)$1	282	133	145	5.9646
dddnnnnndddd	chr17:79525012-79525262(-)$1	250	137	149	8.9660
eeennnnneeee	chr9:19378793-19378996(-)$1	203	122	134	7.4934
ddddmmmmdddd	chr1:47130827-47131030(-)$1	203	130	142	5.9646
dddnnnnndddd	chr5:64018211-64018431(-)$1	220	162	174	8.9660
ddddmmmmdddd	chrX:62567561-62567772(-)$1	211	162	174	5.9646

#otherMatches

#Seq PSSM
UUCAAAGCUGAA	chr11:75111706-75111930(+)$1	224	49	61	5.9646
CCUACACAAGGU	chr6:32942369-32942572(+)$1	203	82	94	7.4934
UUCAAAGCUGAA	chr11:75111730-75111939(+)$1	209	25	37	5.9646
AGCUUACUGCUC	chr22:19711290-19711563(+)$1	273	103	115	8.9660
CAAUACCUUUGC	chr1:38464955-38465202(-)$1	247	216	228	6.5594
CCAAGAAGUGGU	chr8:48874560-48874774(+)$1	214	123	135	6.5594
GAUUCCUUAUCA	chr13:28009666-28009905(+)$1	239	164	176	8.9660
GGUGUCUUGACC	chr9:19378810-19379016(-)$1	206	157	169	6.9259
CCUACACAAGGU	chr6:32942372-32942577(+)$1	205	79	91	7.4934
AAGUUUAUUUUG	chr1:118069877-118070105(+)$1	228	123	135	8.9660
UACACAAGGUAG	chr6:32942411-32942625(+)$1	214	42	54	8.9660
AGUACUCUGACU	chr11:77780878-77781164(-)$1	286	263	275	6.9259
UUCCCCAUGAAG	chr9:19378766-19378983(-)$1	217	109	121	7.4934
UAAGCUUCAUUG	chr6:4115994-4116215(-)$1	221	183	195	6.9259
GCCCACACGGUC	chr1:38471025-38471283(-)$1	258	101	113	6.3524
AGAAAAACUUUC	chr1:28176880-28177142(+)$1	262	152	164	7.4934
CCGGAGACGUGG	chr22:38864098-38864346(+)$1	248	57	69	6.9259
CCAGGGAAUGGC	chr1:110134878-110135128(+)$1	250	160	172	6.5724
GGCUGGUAGGCU	chr4:122744697-122744924(-)$1	227	5	17	5.9646
AGAUGGAUUUUU	chr1:27272637-27272957(+)$1	320	3	15	5.6367
GGUGUCUUGACC	chr9:19378796-19379003(-)$1	207	144	156	6.9259
UUCCCCAUGAAG	chr9:19378710-19378941(-)$1	231	67	79	7.4934
UUGUAAAUACAG	chr13:100215249-100215458(+)$1	209	24	36	5.9646
ucaagcuccuug	chr15:69698750-69698998(+)$1	248	84	96	5.8186
GCUACAAAGGCA	chr5:64018231-64018453(-)$1	222	184	196	8.9660
CCGGGGCAUGGC	chr17:79524988-79525212(-)$1	224	87	99	8.9660
UUUAAUUUGAAA	chr11:86048369-86048676(+)$1	307	12	24	6.9259
GGAACGAUUCUU	chr18:55268734-55268982(-)$1	248	11	23	5.9025
UUCAAAGCUGAA	chr11:75111739-75111951(+)$1	212	16	28	5.9646
GGCGCCCAGCCA	chr19:47724375-47724622(-)$1	247	98	110	6.0268
UUCCCCAUGAAG	chr9:19378749-19378959(-)$1	210	85	97	7.4934
UUCAAAGCUGAA	chr11:75111703-75111906(+)$1	203	52	64	5.9646
GUCAGAUACUGA	chr2:97260523-97260802(-)$1	279	28	40	5.8186
GCUUUUACAGCU	chr4:84393290-84393535(-)$1	245	84	96	8.9660
CAGAGCUGCUGG	chr12:56705012-56705257(-)$1	245	90	102	7.0259
CUAAUGAGGUGG	chr16:70514461-70514718(-)$1	257	33	45	5.6367
UUCCCCAUGAAG	chr9:19378783-19378993(-)$1	210	119	131	7.4934
AGCGUCGAGCUC	chr22:22221752-22221964(-)$1	212	187	199	8.9660
GGACGUAGCGUC	chr9:139760553-139760830(-)$1	277	46	58	5.8186
ccucuuucagga	chrX:30885210-30885436(-)$1	226	91	103	8.9660
UAGACAACUUGG	chr16:70514518-70514724(-)$1	206	153	165	7.4934
UUCCCCAUGAAG	chr9:19378803-19379010(-)$1	207	136	148	7.4934
GCUAAUAAGGCC	chr12:25260648-25260895(+)$1	247	154	166	8.9660
UGCUUACCAGCA	chr1:47130830-47131038(-)$1	208	138	150	5.9646
UUCCCCAUGAAG	chr9:19378741-19378949(-)$1	208	75	87	7.4934
GGACAGAAGUCC	chr7:5270938-5271220(+)$1	282	133	145	5.9646
CCGGGGCAUGGC	chr17:79525012-79525262(-)$1	250	137	149	8.9660
UUCCCCAUGAAG	chr9:19378793-19378996(-)$1	203	122	134	7.4934
UGCUUACCAGCA	chr1:47130827-47131030(-)$1	203	130	142	5.9646
GCUACAAAGGCA	chr5:64018211-64018431(-)$1	220	162	174	8.9660
cuacaugagugg	chrX:62567561-62567772(-)$1	211	162	174	5.9646

#DB
((((....))))	chr11:75111706-75111930(+)$1	1	49	61	5.9646
(((.....))))	chr6:32942369-32942572(+)$1	1	82	94	7.4934
((((....))))	chr11:75111730-75111939(+)$1	1	25	37	5.9646
(((.....))))	chr22:19711290-19711563(+)$1	1	103	115	8.9660
(((.....))).	chr1:38464955-38465202(-)$1	1	216	228	6.5594
(((.....))).	chr8:48874560-48874774(+)$1	1	123	135	6.5594
(((.....))))	chr13:28009666-28009905(+)$1	1	164	176	8.9660
(((......)))	chr9:19378810-19379016(-)$1	1	157	169	6.9259
(((.....))))	chr6:32942372-32942577(+)$1	1	79	91	7.4934
(((.....))))	chr1:118069877-118070105(+)$1	1	123	135	8.9660
(((.....))))	chr6:32942411-32942625(+)$1	1	42	54	8.9660
(((......)))	chr11:77780878-77781164(-)$1	1	263	275	6.9259
(((.....))))	chr9:19378766-19378983(-)$1	1	109	121	7.4934
(((......)))	chr6:4115994-4116215(-)$1	1	183	195	6.9259
(((.....))).	chr1:38471025-38471283(-)$1	1	101	113	6.3524
(((.....))))	chr1:28176880-28177142(+)$1	1	152	164	7.4934
(((......)))	chr22:38864098-38864346(+)$1	1	57	69	6.9259
(((.....))))	chr1:110134878-110135128(+)$1	1	160	172	6.5724
((((....))))	chr4:122744697-122744924(-)$1	1	5	17	5.9646
(((......)))	chr1:27272637-27272957(+)$1	1	3	15	5.6367
(((......)))	chr9:19378796-19379003(-)$1	1	144	156	6.9259
(((.....))))	chr9:19378710-19378941(-)$1	1	67	79	7.4934
((((....))))	chr13:100215249-100215458(+)$1	1	24	36	5.9646
.((((...))))	chr15:69698750-69698998(+)$1	1	84	96	5.8186
(((.....))))	chr5:64018231-64018453(-)$1	1	184	196	8.9660
(((.....))))	chr17:79524988-79525212(-)$1	1	87	99	8.9660
(((......)))	chr11:86048369-86048676(+)$1	1	12	24	6.9259
((((...))))(	chr18:55268734-55268982(-)$1	1	11	23	5.9025
((((....))))	chr11:75111739-75111951(+)$1	1	16	28	5.9646
(((.....))).	chr19:47724375-47724622(-)$1	1	98	110	6.0268
(((.....))))	chr9:19378749-19378959(-)$1	1	85	97	7.4934
((((....))))	chr11:75111703-75111906(+)$1	1	52	64	5.9646
.((((...))))	chr2:97260523-97260802(-)$1	1	28	40	5.8186
(((.....))))	chr4:84393290-84393535(-)$1	1	84	96	8.9660
(((.....))))	chr12:56705012-56705257(-)$1	1	90	102	7.0259
(((......)))	chr16:70514461-70514718(-)$1	1	33	45	5.6367
(((.....))))	chr9:19378783-19378993(-)$1	1	119	131	7.4934
(((.....))))	chr22:22221752-22221964(-)$1	1	187	199	8.9660
.((((...))))	chr9:139760553-139760830(-)$1	1	46	58	5.8186
(((.....))))	chrX:30885210-30885436(-)$1	1	91	103	8.9660
(((.....))))	chr16:70514518-70514724(-)$1	1	153	165	7.4934
(((.....))))	chr9:19378803-19379010(-)$1	1	136	148	7.4934
(((.....))))	chr12:25260648-25260895(+)$1	1	154	166	8.9660
((((....))))	chr1:47130830-47131038(-)$1	1	138	150	5.9646
(((.....))))	chr9:19378741-19378949(-)$1	1	75	87	7.4934
((((....))))	chr7:5270938-5271220(+)$1	1	133	145	5.9646
(((.....))))	chr17:79525012-79525262(-)$1	1	137	149	8.9660
(((.....))))	chr9:19378793-19378996(-)$1	1	122	134	7.4934
((((....))))	chr1:47130827-47131030(-)$1	1	130	142	5.9646
(((.....))))	chr5:64018211-64018431(-)$1	1	162	174	8.9660
((((....))))	chrX:62567561-62567772(-)$1	1	162	174	5.9646

#PSSM
d : 0.56	e : 0.25	c : 0.11	[ : 0.05	
d : 0.62	e : 0.25	c : 0.11	
d : 0.62	e : 0.25	c : 0.11	
n : 0.56	d : 0.27	o : 0.15	
n : 0.56	m : 0.19	o : 0.15	d : 0.05	l : 0.01	
n : 0.56	m : 0.19	o : 0.15	l : 0.07	
n : 0.56	m : 0.19	o : 0.15	l : 0.07	
n : 0.56	m : 0.19	o : 0.15	l : 0.05	d : 0.01	
d : 0.50	e : 0.21	o : 0.15	c : 0.11	
d : 0.62	e : 0.25	c : 0.11	
d : 0.62	e : 0.25	c : 0.11	
d : 0.62	e : 0.27	] : 0.03	2 : 0.01	a : 0.01	7 : 0.01	

#score	364.95189676205297
#seq	51
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_transcript_m3_run1.txt

#BEAR
$bb[eeeeeuuuuuuuuuuuueeeee]bb	chr17:55339665-55339939(+)$1	274	179	208	23.8001
]ccc:ccc[attttttttttta]ccc::c	chr2:46526135-46526394(+)$1	259	59	88	21.0121
gggggggyyyyyyyyyyyyyyyygggggg	chr5:171688283-171688702(-)$1	419	136	165	24.1789
gggggggyyyyyyyyyyyyyyyygggggg	chr5:32168199-32168484(-)$1	285	174	203	24.1789
[hhhhhhhhyyyyyyyyyyyyyyyyhhhh	chr6:144655408-144655726(+)$1	318	18	47	21.9349
''''''cccuuuuuuuuuuuucccfffff	chr12:24085611-24085900(-)$1	289	37	66	21.1683
d"""cccbbvvvvvvvvvvvvvbb]ccc]	chr6:157342987-157343274(+)$1	287	141	170	23.3965
bdddd[cccvvvvvvvvvvvvvccc]ddd	chr11:70427101-70427365(-)$1	264	147	176	23.6206
b[dddd[avvvvvvvvvvvvva]ddddbb	chr10:76183219-76183523(+)$1	304	123	152	22.3613
dddd[dddduuuuuuuuuuuudddd]ddd	chr7:2673405-2673644(+)$1	239	147	176	23.5637
####fffffftttttttttttffffff55	chr22:43381929-43382219(-)$1	290	73	102	21.8355
==========ttttttttttt========	chr17:2515094-2515532(+)$1	438	243	272	25.5913
##ffffffvvvvvvvvvvvvvffffff44	chr15:44755733-44756051(+)$1	318	159	188	23.1701
[eeeeeddddtttttttttttdddd]eee	chr6:4777343-4777622(+)$1	279	210	239	23.4461
eea[eeeeevvvvvvvvvvvvveeeee]a	chr13:20292390-20292631(-)$1	241	54	83	23.8949
gggg!!ddddtttttttttttdddd22gg	chr4:1873953-1874205(+)$1	252	122	151	23.5634
!bb[eeeeeuuuuuuuuuuuueeeee22b	chr18:77675969-77676197(-)$1	228	154	183	23.9014
=========vvvvvvvvvvvvv=======	chr19:4970969-4971259(+)$1	290	139	168	25.8788
=========uuuuuuuuuuuu========	chr5:74161184-74161477(-)$1	293	243	272	26.5759
:ffffffyyyyyyyyyyyyyyyyffffff	chr17:80187044-80187255(+)$1	211	10	39	21.6413
ee!!eeeeevvvvvvvvvvvvveeeee]e	chr22:29345718-29345959(+)$1	241	3	32	24.0098
c[ddddcccyyyyyyyyyyyyyyyyccc]	chr2:159338312-159338682(+)$1	370	252	281	22.9326
eeeee[cccuuuuuuuuuuuuccc]eeee	chr2:101453174-101453422(+)$1	248	48	77	24.7231
ii[a[dddduuuuuuuuuuuuddddaiii	chr7:105016058-105016407(-)$1	349	59	88	24.7592
iiiii!!bbvvvvvvvvvvvvvbb22iii	chr12:11251249-11251573(-)$1	324	69	98	24.0197
==========ttttttttttt========	chr4:74070245-74070499(-)$1	254	130	159	25.5913
iiiiiiiiitttttttttttiiiiiiiii	chr19:1415184-1415421(+)$1	237	21	50	24.4631
"""gggggggtttttttttttggggggg3	chr16:81503902-81504150(+)$1	248	165	194	24.8567
bb[gggggggtttttttttttggggggg]	chr6:168247510-168247784(+)$1	274	164	193	24.3164
g::ffffffwwwwwwwwwwwwwwffffff	chr17:79964527-79964752(+)$1	225	68	97	20.5780
iiiii[cccvvvvvvvvvvvvvccciiii	chr3:65582592-65582873(-)$1	281	115	144	25.3918
[gggggggvvvvvvvvvvvvvggggggg]	chr13:98829310-98829586(+)$1	276	62	91	24.8654
eeeeeyyyyyyyyyyyyyyyyeeeeeggg	chr13:113360678-113361110(+)$1	432	255	284	21.7847
[bbffffffuuuuuuuuuuuuffffff33	chr3:66002693-66002999(-)$1	306	86	115	24.1238
ccc[eeeeeuuuuuuuuuuuueeeeeccc	chr11:857961-858296(+)$1	335	196	225	24.5386
iiiiiiiiitttttttttttiiiiiiiii	chr6:1851017-1851295(-)$1	278	119	148	24.4631
eeee[bbbbuuuuuuuuuuuubb]bb]ee	chr1:246386015-246386268(-)$1	253	61	90	22.6594
ggg!!ddddyyyyyyyyyyyyyyyydddd	chr16:75294887-75295125(-)$1	238	52	81	22.7502
[dddd[cccvvvvvvvvvvvvvccc333d	chr4:124034100-124034444(+)$1	344	206	235	24.3635
iiiiiiiiiuuuuuuuuuuuuiiiiiiii	chr6:163915201-163915485(+)$1	284	60	89	26.1704
bb!!fffffftttttttttttffffff22	chr8:13086605-13086915(-)$1	310	236	265	22.7556
[hhhhhhhhyyyyyyyyyyyyyyyyhhhh	chr13:98865830-98866086(+)$1	256	167	196	21.9349
iiiiiiiiiwwwwwwwwwwwwwwiiiiii	chr17:75284782-75285042(+)$1	260	199	228	24.3985
++++adddduuuuuuuuuuuudddd]a>>	chr4:1239434-1239699(-)$1	265	152	181	21.3850
=====ddddyyyyyyyyyyyyyyyydddd	chr7:92449941-92450197(-)$1	256	216	245	22.9950
a[ggggggguuuuuuuuuuuuggggggg]	chrX:73459922-73460210(-)$1	288	189	218	25.8106
[ccc[ccc[attttttttttta]cccccc	chr10:34918644-34918963(-)$1	319	122	151	24.8794
[gggggggwwwwwwwwwwwwwwggggggg	chr9:3482000-3482280(-)$1	280	84	113	24.2045
ffffffddddtttttttttttdddd]fff	chr21:44263221-44263496(-)$1	275	174	203	22.7889
fff[eeeeeuuuuuuuuuuuueeeee]ff	chr3:71624333-71624609(-)$1	276	230	259	24.2060
%%gggggggtttttttttttggggggg>>	chr10:43900453-43900704(-)$1	251	48	77	22.5148
gggggggwwwwwwwwwwwwwwgggggggf	chr20:35487390-35487688(-)$1	298	169	198	23.2182
::gggggggvvvvvvvvvvvvvggggggg	chr4:1216577-1216814(-)$1	237	108	137	23.3165
[eeeeeddddtttttttttttdddd]eee	chr16:89462614-89462898(-)$1	284	20	49	23.4461
:::ddddcccuuuuuuuuuuuuccc]ddd	chr10:80829815-80830074(+)$1	259	229	258	20.5502
[ccceeeeeuuuuuuuuuuuueeeee444	chr17:75415952-75416172(+)$1	220	22	51	24.6102
iiiiiiiiiuuuuuuuuuuuuiiiiiiii	chr17:56486081-56486320(-)$1	239	207	236	26.1704
[dddd!!bbuuuuuuuuuuuubb333ddd	chr2:236450348-236450620(+)$1	272	65	94	23.6577
eeee!!cccuuuuuuuuuuuuccc22eee	chr7:5462654-5462892(-)$1	238	148	177	24.4535
d!!ffffffuuuuuuuuuuuuffffff]d	chr3:32896546-32896789(+)$1	243	107	136	24.0703
"eeeee[bbwwwwwwwwwwwwwwbbeeee	chr14:100064519-100064775(-)$1	256	215	244	22.2124

#otherMatches

#Seq PSSM
AGCAUUUCCAAUAUCAUAUCAGGAAAAGU	chr17:55339665-55339939(+)$1	274	179	208	23.8001
AUAGAGGUGCGAGGAUGAGGAGGACCGAC	chr2:46526135-46526394(+)$1	259	59	88	21.0121
GGCAUAAUCCUGCUCAUCUUUCCUUGUGC	chr5:171688283-171688702(-)$1	419	136	165	24.1789
GAAAUUCAGUCAACAAGUAUUCAGAAUUU	chr5:32168199-32168484(-)$1	285	174	203	24.1789
UCCUCCCUCUUUCCGGUGUGUGUUUGGGG	chr6:144655408-144655726(+)$1	318	18	47	21.9349
AAAUACUGCUCUUUUCCACUUGCAAAGUA	chr12:24085611-24085900(-)$1	289	37	66	21.1683
AAAACCACCACCCAAACUUAAAGGCUGGA	chr6:157342987-157343274(+)$1	287	141	170	23.3965
CCCUGAACCUUAAUCUAUUCUUGGUCCAG	chr11:70427101-70427365(-)$1	264	147	176	23.6206
CUGAUGUCUCCAUAGUCAACUGUCGUCGU	chr10:76183219-76183523(+)$1	304	123	152	22.3613
CUGCAGCCCACAAGAGCCUCCGGGCAGUA	chr7:2673405-2673644(+)$1	239	147	176	23.5637
UGCCUAAUGCUUACUGUUUCUGUGUUAAU	chr22:43381929-43382219(-)$1	290	73	102	21.8355
UGAACCAUUAUUGGCAGUUUUUAAUGGUU	chr17:2515094-2515532(+)$1	438	243	272	25.5913
auuauuguugcuuucuuaucuacaauguc	chr15:44755733-44756051(+)$1	318	159	188	23.1701
ACCACAUGCUUUAAUUAGGUUAGCAUUGU	chr6:4777343-4777622(+)$1	279	210	239	23.4461
uagugcugucucauuuuaauuugcaguuc	chr13:20292390-20292631(-)$1	241	54	83	23.8949
UUUGCUCCACUCACAGGAACCGUGGUUUA	chr4:1873953-1874205(+)$1	252	122	151	23.5634
AGCACCGUGGGUAUGGGAGGGUACGGGAG	chr18:77675969-77676197(-)$1	228	154	183	23.9014
UGCUGAGACCUGAAAUAUAUAUGUCUUAG	chr19:4970969-4971259(+)$1	290	139	168	25.8788
AUCGGGUGGAUUCGAAGAUAACCACCUGA	chr5:74161184-74161477(-)$1	293	243	272	26.5759
UCGGGGUCCGCGCUCUCACCCCCACCCCG	chr17:80187044-80187255(+)$1	211	10	39	21.6413
uuagucucauuucauuccuuuuugagaaa	chr22:29345718-29345959(+)$1	241	3	32	24.0098
Ccugugcugucuaaaauauauccacuagu	chr2:159338312-159338682(+)$1	370	252	281	22.9326
UCCCCGGGCCACAUGUAUAAUGUUGGGGG	chr2:101453174-101453422(+)$1	248	48	77	24.7231
ggacuacagguguuugcccuacugugccc	chr7:105016058-105016407(-)$1	349	59	88	24.7592
UGGAAACUCAUUUUUUAUUUUGGAAAUUU	chr12:11251249-11251573(-)$1	324	69	98	24.0197
auauuuucuuaaaugaggaaaaagaagau	chr4:74070245-74070499(-)$1	254	130	159	25.5913
CCUUCUGCCAGUGAGGUGGGGGUGGAGGG	chr19:1415184-1415421(+)$1	237	21	50	24.4631
AAAACAGCUUUCUUUUCCCUUGGGUUGUC	chr16:81503902-81504150(+)$1	248	165	194	24.8567
CUGUCAGUUUGUUUAAUUUUAAAGCUGAA	chr6:168247510-168247784(+)$1	274	164	193	24.3164
CCUCGCUGUCGCUUUUUUCCCUCACAGUG	chr17:79964527-79964752(+)$1	225	68	97	20.5780
GGAAGGCAGGGGAGAGGGAGAGCUGCUUC	chr3:65582592-65582873(-)$1	281	115	144	25.3918
CGCAGGCCGGGCGCUUUCUGAGGCCUGCA	chr13:98829310-98829586(+)$1	276	62	91	24.8654
UUACAUUUAAGAGUAUUUUCCUGUAAAAU	chr13:113360678-113361110(+)$1	432	255	284	21.7847
ACUAACUCCUACUUUCUCCUUGGGGUUCC	chr3:66002693-66002999(-)$1	306	86	115	24.1238
GAGUGGGCCAUUGCCUGUCCAGGCCUCUC	chr11:857961-858296(+)$1	335	196	225	24.5386
CUAAUUCCCACAGCAGAGACGGGAGUUAG	chr6:1851017-1851295(-)$1	278	119	148	24.4631
UAUUAGAGCACAUACGAUUUAGCAUCAAA	chr1:246386015-246386268(-)$1	253	61	90	22.6594
UCCCUCUCUGCAGGAAAAAGGAAAAAGAG	chr16:75294887-75295125(-)$1	238	52	81	22.7502
UUAUUUUCAUUGGUUUUGAGUUUGACUUA	chr4:124034100-124034444(+)$1	344	206	235	24.3635
guauuuuaaguaaucuagugauuaaagua	chr6:163915201-163915485(+)$1	284	60	89	26.1704
gccucuuuuugguuauuaugaagaaagcu	chr8:13086605-13086915(-)$1	310	236	265	22.7556
UGUGGCUGGAUCCCAGUUUAAUUUACUGG	chr13:98865830-98866086(+)$1	256	167	196	21.9349
GGCGGGGAGGAGGAGGUGGUGGAUUUCUC	chr17:75284782-75285042(+)$1	260	199	228	24.3985
CUACCCGUGCUACCCUACCCACACGUGCC	chr4:1239434-1239699(-)$1	265	152	181	21.3850
auauuuuuauuucauauaauaauuuuaaa	chr7:92449941-92450197(-)$1	256	216	245	22.9950
AUAUCCUGUAAGAAUCAGGGGACAGGGUU	chrX:73459922-73460210(-)$1	288	189	218	25.8106
UGAAAUAUACUUAAUAUCUAUGCAUAUUC	chr10:34918644-34918963(-)$1	319	122	151	24.8794
GUAAUGAAUAAAAUUUUGUAUCUUUAUUA	chr9:3482000-3482280(-)$1	280	84	113	24.2045
acgaugagcuuguucggauguagcuccau	chr21:44263221-44263496(-)$1	275	174	203	22.7889
UUUUUAAUGUAUUUGGAUUUUUAUUACGA	chr3:71624333-71624609(-)$1	276	230	259	24.2060
auuguauuaauaauuuaaccuaauauaua	chr10:43900453-43900704(-)$1	251	48	77	22.5148
ucucaucuguauaauaaaggugauggggc	chr20:35487390-35487688(-)$1	298	169	198	23.2182
UGGCCAGGGAUGUCUGUAGUUCCCCUGGU	chr4:1216577-1216814(-)$1	237	108	137	23.3165
auacgacaccaaaacccagcagguguuug	chr16:89462614-89462898(-)$1	284	20	49	23.4461
GAAGCCGGCCGGGCGGGGAUAGGGCGCGG	chr10:80829815-80830074(+)$1	259	229	258	20.5502
GGCUGGGUGUCGCUGCAAAACCACCCAUU	chr17:75415952-75416172(+)$1	220	22	51	24.6102
AACAUGCUUAUCACAUUUUUAAAGUAUGU	chr17:56486081-56486320(-)$1	239	207	236	26.1704
auauauugcucaauuuuaccuguuucuau	chr2:236450348-236450620(+)$1	272	65	94	23.6577
GCUGUUUUUAAUUAAAAGCCGGAAUUCAG	chr7:5462654-5462892(-)$1	238	148	177	24.4535
cacugggggucuuggacguaucccccaag	chr3:32896546-32896789(+)$1	243	107	136	24.0703
gccaagugggaaaauguuacuaaccuuug	chr14:100064519-100064775(-)$1	256	215	244	22.2124

#DB
.((.(((((............))))).))	chr17:55339665-55339939(+)$1	1	179	208	23.8001
.))).(((.(...........).)))..(	chr2:46526135-46526394(+)$1	1	59	88	21.0121
(((((((................))))))	chr5:171688283-171688702(-)$1	1	136	165	24.1789
(((((((................))))))	chr5:32168199-32168484(-)$1	1	174	203	24.1789
.((((((((................))))	chr6:144655408-144655726(+)$1	1	18	47	21.9349
......(((............))))))))	chr12:24085611-24085900(-)$1	1	37	66	21.1683
(...(((((.............)).))).	chr6:157342987-157343274(+)$1	1	141	170	23.3965
(((((.(((.............))).)))	chr11:70427101-70427365(-)$1	1	147	176	23.6206
(.((((.(.............).))))))	chr10:76183219-76183523(+)$1	1	123	152	22.3613
((((.((((............)))).)))	chr7:2673405-2673644(+)$1	1	147	176	23.5637
....((((((...........))))))..	chr22:43381929-43382219(-)$1	1	73	102	21.8355
((((((((((...........))))))))	chr17:2515094-2515532(+)$1	1	243	272	25.5913
..((((((.............))))))..	chr15:44755733-44756051(+)$1	1	159	188	23.1701
.(((((((((...........)))).)))	chr6:4777343-4777622(+)$1	1	210	239	23.4461
(((.(((((.............))))).)	chr13:20292390-20292631(-)$1	1	54	83	23.8949
((((..((((...........))))..))	chr4:1873953-1874205(+)$1	1	122	151	23.5634
.((.(((((............)))))..)	chr18:77675969-77676197(-)$1	1	154	183	23.9014
(((((((((.............)))))))	chr19:4970969-4971259(+)$1	1	139	168	25.8788
(((((((((............))))))))	chr5:74161184-74161477(-)$1	1	243	272	26.5759
.((((((................))))))	chr17:80187044-80187255(+)$1	1	10	39	21.6413
((..(((((.............))))).)	chr22:29345718-29345959(+)$1	1	3	32	24.0098
(.(((((((................))).	chr2:159338312-159338682(+)$1	1	252	281	22.9326
(((((.(((............))).))))	chr2:101453174-101453422(+)$1	1	48	77	24.7231
((.(.((((............))))))))	chr7:105016058-105016407(-)$1	1	59	88	24.7592
(((((..((.............))..)))	chr12:11251249-11251573(-)$1	1	69	98	24.0197
((((((((((...........))))))))	chr4:74070245-74070499(-)$1	1	130	159	25.5913
(((((((((...........)))))))))	chr19:1415184-1415421(+)$1	1	21	50	24.4631
...(((((((...........))))))).	chr16:81503902-81504150(+)$1	1	165	194	24.8567
((.(((((((...........))))))).	chr6:168247510-168247784(+)$1	1	164	193	24.3164
)..((((((..............))))))	chr17:79964527-79964752(+)$1	1	68	97	20.5780
(((((.(((.............)))))))	chr3:65582592-65582873(-)$1	1	115	144	25.3918
.(((((((.............))))))).	chr13:98829310-98829586(+)$1	1	62	91	24.8654
(((((................)))))(((	chr13:113360678-113361110(+)$1	1	255	284	21.7847
.((((((((............))))))..	chr3:66002693-66002999(-)$1	1	86	115	24.1238
(((.(((((............))))))))	chr11:857961-858296(+)$1	1	196	225	24.5386
(((((((((...........)))))))))	chr6:1851017-1851295(-)$1	1	119	148	24.4631
((((.((((............)).)).))	chr1:246386015-246386268(-)$1	1	61	90	22.6594
(((..((((................))))	chr16:75294887-75295125(-)$1	1	52	81	22.7502
.((((.(((.............)))...)	chr4:124034100-124034444(+)$1	1	206	235	24.3635
(((((((((............))))))))	chr6:163915201-163915485(+)$1	1	60	89	26.1704
((..((((((...........))))))..	chr8:13086605-13086915(-)$1	1	236	265	22.7556
.((((((((................))))	chr13:98865830-98866086(+)$1	1	167	196	21.9349
(((((((((..............))))))	chr17:75284782-75285042(+)$1	1	199	228	24.3985
....(((((............)))).)..	chr4:1239434-1239699(-)$1	1	152	181	21.3850
(((((((((................))))	chr7:92449941-92450197(-)$1	1	216	245	22.9950
(.(((((((............))))))).	chrX:73459922-73460210(-)$1	1	189	218	25.8106
.(((.(((.(...........).))))))	chr10:34918644-34918963(-)$1	1	122	151	24.8794
.(((((((..............)))))))	chr9:3482000-3482280(-)$1	1	84	113	24.2045
((((((((((...........)))).)))	chr21:44263221-44263496(-)$1	1	174	203	22.7889
(((.(((((............))))).))	chr3:71624333-71624609(-)$1	1	230	259	24.2060
..(((((((...........)))))))..	chr10:43900453-43900704(-)$1	1	48	77	22.5148
(((((((..............)))))))(	chr20:35487390-35487688(-)$1	1	169	198	23.2182
..(((((((.............)))))))	chr4:1216577-1216814(-)$1	1	108	137	23.3165
.(((((((((...........)))).)))	chr16:89462614-89462898(-)$1	1	20	49	23.4461
...(((((((............))).)))	chr10:80829815-80830074(+)$1	1	229	258	20.5502
.((((((((............)))))...	chr17:75415952-75416172(+)$1	1	22	51	24.6102
(((((((((............))))))))	chr17:56486081-56486320(-)$1	1	207	236	26.1704
.((((..((............))...)))	chr2:236450348-236450620(+)$1	1	65	94	23.6577
((((..(((............)))..)))	chr7:5462654-5462892(-)$1	1	148	177	24.4535
(..((((((............)))))).)	chr3:32896546-32896789(+)$1	1	107	136	24.0703
.(((((.((..............))))))	chr14:100064519-100064775(-)$1	1	215	244	22.2124

#PSSM
[ : 0.18	i : 0.13	g : 0.09	e : 0.09	= : 0.08	b : 0.06	d : 0.04	: : 0.04	# : 0.03	c : 0.03	" : 0.03	f : 0.03	$ : 0.01	] : 0.01	' : 0.01	! : 0.01	+ : 0.01	a : 0.01	% : 0.01	
e : 0.14	i : 0.13	g : 0.11	b : 0.08	= : 0.08	c : 0.06	d : 0.06	[ : 0.04	f : 0.04	: : 0.04	h : 0.03	" : 0.03	# : 0.03	' : 0.01	+ : 0.01	% : 0.01	! : 0.01	
g : 0.16	e : 0.11	i : 0.11	d : 0.09	= : 0.08	c : 0.06	f : 0.06	b : 0.04	! : 0.04	h : 0.03	" : 0.03	[ : 0.03	: : 0.03	' : 0.01	# : 0.01	a : 0.01	+ : 0.01	
g : 0.18	d : 0.11	e : 0.11	i : 0.11	f : 0.09	[ : 0.08	= : 0.08	c : 0.04	! : 0.04	h : 0.03	' : 0.01	" : 0.01	# : 0.01	a : 0.01	+ : 0.01	
e : 0.19	g : 0.16	f : 0.13	i : 0.11	d : 0.09	= : 0.08	[ : 0.06	! : 0.04	h : 0.03	: : 0.01	' : 0.01	c : 0.01	a : 0.01	
e : 0.16	g : 0.16	d : 0.13	f : 0.13	i : 0.08	[ : 0.06	= : 0.06	! : 0.06	c : 0.04	h : 0.03	' : 0.01	y : 0.01	b : 0.01	
c : 0.16	g : 0.16	d : 0.16	e : 0.11	f : 0.11	i : 0.08	= : 0.06	h : 0.03	[ : 0.03	! : 0.03	y : 0.01	b : 0.01	
c : 0.16	d : 0.14	e : 0.11	g : 0.11	f : 0.09	b : 0.08	i : 0.08	y : 0.06	= : 0.06	h : 0.03	a : 0.01	w : 0.01	
d : 0.14	c : 0.13	e : 0.11	b : 0.08	f : 0.08	i : 0.08	g : 0.08	y : 0.06	= : 0.06	v : 0.04	[ : 0.03	h : 0.03	w : 0.03	
u : 0.31	v : 0.19	y : 0.14	w : 0.08	d : 0.06	t : 0.04	a : 0.03	f : 0.03	= : 0.03	g : 0.03	c : 0.01	
u : 0.32	t : 0.24	v : 0.19	y : 0.14	w : 0.08	
u : 0.32	t : 0.24	v : 0.19	y : 0.14	w : 0.08	
u : 0.32	t : 0.24	v : 0.19	y : 0.14	w : 0.08	
u : 0.32	t : 0.24	v : 0.19	y : 0.14	w : 0.08	
u : 0.32	t : 0.24	v : 0.19	y : 0.14	w : 0.08	
u : 0.32	t : 0.24	v : 0.19	y : 0.14	w : 0.08	
u : 0.32	t : 0.24	v : 0.19	y : 0.14	w : 0.08	
u : 0.32	t : 0.24	v : 0.19	y : 0.14	w : 0.08	
u : 0.32	t : 0.24	v : 0.19	y : 0.14	w : 0.08	
u : 0.32	t : 0.24	v : 0.19	y : 0.14	w : 0.08	
u : 0.32	t : 0.19	v : 0.19	y : 0.14	w : 0.08	i : 0.03	g : 0.01	
v : 0.14	y : 0.13	d : 0.11	e : 0.09	g : 0.09	f : 0.08	i : 0.06	w : 0.06	a : 0.04	c : 0.04	= : 0.04	b : 0.03	u : 0.01	
e : 0.13	y : 0.13	g : 0.13	c : 0.11	d : 0.11	f : 0.08	b : 0.06	= : 0.06	i : 0.06	] : 0.04	w : 0.04	
g : 0.16	c : 0.14	e : 0.13	d : 0.13	f : 0.11	y : 0.08	i : 0.08	= : 0.06	b : 0.04	] : 0.01	3 : 0.01	
g : 0.16	e : 0.13	f : 0.13	d : 0.13	c : 0.09	y : 0.08	i : 0.08	= : 0.06	] : 0.03	2 : 0.03	b : 0.03	3 : 0.01	
e : 0.16	g : 0.16	f : 0.13	] : 0.11	i : 0.09	c : 0.06	= : 0.06	d : 0.04	2 : 0.04	h : 0.03	3 : 0.03	a : 0.01	b : 0.01	
g : 0.18	f : 0.14	i : 0.13	d : 0.11	e : 0.11	c : 0.06	= : 0.06	] : 0.04	h : 0.03	2 : 0.03	: : 0.01	3 : 0.01	a : 0.01	4 : 0.01	
g : 0.18	i : 0.13	d : 0.09	e : 0.09	f : 0.08	c : 0.06	= : 0.06	] : 0.04	b : 0.03	h : 0.03	4 : 0.03	2 : 0.03	3 : 0.03	> : 0.03	: : 0.01	5 : 0.01	
d : 0.13	i : 0.13	e : 0.11	g : 0.09	f : 0.09	] : 0.08	= : 0.06	b : 0.04	c : 0.04	h : 0.03	4 : 0.03	3 : 0.03	> : 0.03	5 : 0.01	a : 0.01	2 : 0.01	

#score	1443.656580650383
#seq	61
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_CDS_m3_run1.txt

#BEAR
ddd[bbrrrrrrrrrbb]dd	chr11:70265873-70266133(+)$1	260	10	30	7.5407
[eeeeerrrrrrrrreeeee	chr3:42660488-42660764(+)$1	276	89	109	8.0146
##ddddqqqqqqqqdddd44	chr17:39846346-39846612(+)$1	266	118	138	12.8020
ccc[bbqqqqqqqqbbccc]	chr12:69746941-69747182(+)$1	241	176	196	13.6891
[eeeeeqqqqqqqqeeeeec	chr2:85823689-85824000(+)$1	311	212	232	13.2647
fff[bbqqqqqqqqbb]fff	chr11:61188479-61188748(-)$1	269	213	233	13.6089
[bb[bbqqqqqqqqbb]bb]	chr6:28872170-28872417(-)$1	247	130	150	12.9157
:eeeeeqqqqqqqqeeeee:	chrX:48673629-48673897(+)$1	268	47	67	11.1325
iiicccqqqqqqqqccc]ii	chr9:95013915-95014201(-)$1	286	205	225	13.7470
ggg[bbqqqqqqqqbb333g	chr2:223773510-223773730(+)$1	220	108	128	14.1073
===[bbqqqqqqqqbb====	chr4:74286708-74286911(+)$1	203	93	113	13.9614
bbddddqqqqqqqqdddddd	chr19:13054627-13054874(+)$1	247	134	154	12.0725
cc[cccqqqqqqqqccc333	chr15:85213072-85213393(-)$1	321	99	119	13.9393
hh[cccqqqqqqqqccchhh	chr2:86360303-86360600(+)$1	297	14	34	12.7350
eee[bbqqqqqqqqbb]eee	chr6:31625410-31625664(+)$1	254	184	204	13.5679
dddcccqqqqqqqqccc22d	chr4:78739996-78740349(-)$1	353	212	232	12.8900
!!ddddqqqqqqqqdddd22	chr1:33146018-33146294(+)$1	276	60	80	12.8614
####bbqqqqqqqqbb22ee	chr2:120885116-120885368(+)$1	252	149	169	12.9342
dd!!bbqqqqqqqqbb22dd	chr17:48827968-48828209(+)$1	241	43	63	12.7636
ggggggqqqqqqqqgggggg	chr19:2230435-2230686(+)$1	251	86	106	13.5518
cc[cccqqqqqqqqcccccc	chr14:97000813-97001047(+)$1	234	29	49	13.4965
ffffffqqqqqqqqffffff	chr6:24291049-24291291(-)$1	242	131	151	13.0811
hhhhhhqqqqqqqqhhhhhh	chr3:50098915-50099160(+)$1	245	152	172	11.3507
"bb[bbqqqqqqqqbb]bb3	chr14:23239357-23239615(+)$1	258	205	225	12.8823
ggg[cccpppppppccc22g	chr4:39459823-39460087(-)$1	264	152	172	5.9361
ffffffqqqqqqqqffffff	chr10:101563802-101564104(+)$1	302	247	267	13.0811
ffffffqqqqqqqqffffff	chr17:37009850-37010070(-)$1	220	1	21	13.0811
eeeeerrrrrrrrreeeeec	chr1:33252379-33252660(-)$1	281	128	148	7.7480
ceeeeeqqqqqqqqeeeee3	chr4:110661921-110662157(-)$1	236	75	95	13.2815
ggddddqqqqqqqqdddd]g	chr17:41622529-41622805(+)$1	276	102	122	13.0567
ffffffqqqqqqqqffffff	chr16:28847404-28847664(+)$1	260	117	137	13.0811
a[ddddqqqqqqqqdddd]a	chr10:70516163-70516430(+)$1	267	25	45	12.9003
+eeeeeqqqqqqqqeeeee3	chr2:114476679-114476941(-)$1	262	175	195	12.6599
ffffffqqqqqqqqffffff	chr12:53860997-53861244(+)$1	247	126	146	13.0811
ggggggqqqqqqqqgggggg	chrX:128582142-128582400(-)$1	258	158	178	13.5518
""ddddqqqqqqqqdddd33	chr14:96998670-96998961(+)$1	291	9	29	13.1238
ffffffrrrrrrrrrfffff	chr15:64430209-64430495(+)$1	286	168	188	7.8723
ggggggqqqqqqqqgggggg	chr14:31067517-31067806(+)$1	289	152	172	13.5518

#otherMatches

#Seq PSSM
AUCGACAAGGACAAAGUGGA	chr11:70265873-70266133(+)$1	260	10	30	7.5407
UGGUUAAAAACUUUAUGAUU	chr3:42660488-42660764(+)$1	276	89	109	8.0146
UGUGCCUCUCUGCUGGCAAA	chr17:39846346-39846612(+)$1	266	118	138	12.8020
AGGAGCAAAAUAUGGCCUUU	chr12:69746941-69747182(+)$1	241	176	196	13.6891
CAGAGCCUGUAGCAGCUCUC	chr2:85823689-85824000(+)$1	311	212	232	13.2647
UGUGAUAAUGGUGGGUGAUG	chr11:61188479-61188748(-)$1	269	213	233	13.6089
GCCGGGAGACAUUAUUGGGA	chr6:28872170-28872417(-)$1	247	130	150	12.9157
cuaaguuccuuguugcuuga	chrX:48673629-48673897(+)$1	268	47	67	11.1325
AUUAUUCUGCCAAAAAUAGA	chr9:95013915-95014201(-)$1	286	205	225	13.7470
UUUCUCCGAGUCAAGACAAG	chr2:223773510-223773730(+)$1	220	108	128	14.1073
UUUUCAGCCUACCAUGAGAA	chr4:74286708-74286911(+)$1	203	93	113	13.9614
GCGCUCCUGCCGCAGAGCUG	chr19:13054627-13054874(+)$1	247	134	154	12.0725
GUUCUCUUUUUGCUGGGUUU	chr15:85213072-85213393(-)$1	321	99	119	13.9393
UGAUUUGUCUAAUGGAACAA	chr2:86360303-86360600(+)$1	297	14	34	12.7350
UGUGGCUAAGAGCUGUGAUG	chr6:31625410-31625664(+)$1	254	184	204	13.5679
AGCCUCGCAGGUGAGAGCUG	chr4:78739996-78740349(-)$1	353	212	232	12.8900
UUUUAAAAAUUAAAUUAAUC	chr1:33146018-33146294(+)$1	276	60	80	12.8614
UUCCUCUGAAUAUUGAUUUG	chr2:120885116-120885368(+)$1	252	149	169	12.9342
AGUCCAAUUAAAACUGAUCU	chr17:48827968-48828209(+)$1	241	43	63	12.7636
AGUGCAUUUACUUUUGUAUU	chr19:2230435-2230686(+)$1	251	86	106	13.5518
AGUGCUAUUGAAACAGCCUG	chr14:97000813-97001047(+)$1	234	29	49	13.4965
GGUAAGUCUUACUCCUUACC	chr6:24291049-24291291(-)$1	242	131	151	13.0811
GGAUUUUAUUCCCUGGAUUC	chr3:50098915-50099160(+)$1	245	152	172	11.3507
UCCCCCAAAAAACAGGUGGU	chr14:23239357-23239615(+)$1	258	205	225	12.8823
UUCUAGUCGACAUUACUCUG	chr4:39459823-39460087(-)$1	264	152	172	5.9361
GAAGAAUAUAAGCUUUCUUU	chr10:101563802-101564104(+)$1	302	247	267	13.0811
GGCCGGUUUUUGCUCCGGCC	chr17:37009850-37010070(-)$1	220	1	21	13.0811
CUCUGUUUUCUUCCUAGAGG	chr1:33252379-33252660(-)$1	281	128	148	7.7480
AGGAAGGCCUUUUAUUUCUC	chr4:110661921-110662157(-)$1	236	75	95	13.2815
UGCUCUUUACCUUCAGAGUC	chr17:41622529-41622805(+)$1	276	102	122	13.0567
UUUGGCAUGGAAGAGCUGAG	chr16:28847404-28847664(+)$1	260	117	137	13.0811
GCAGCUGGUCGAGAAGCUUC	chr10:70516163-70516430(+)$1	267	25	45	12.9003
AUUUGCUUUUAUAUGCAGAA	chr2:114476679-114476941(-)$1	262	175	195	12.6599
GAGGCCAGUCCCAAGGUCUC	chr12:53860997-53861244(+)$1	247	126	146	13.0811
AUUAUGUUUAAUGCCAUAGU	chrX:128582142-128582400(-)$1	258	158	178	13.5518
CCGAUGAAAUUUUACAUCUA	chr14:96998670-96998961(+)$1	291	9	29	13.1238
CCUCAGCUACCUGUUCUGAG	chr15:64430209-64430495(+)$1	286	168	188	7.8723
UUUAUAUCUUCUUUUAUAGA	chr14:31067517-31067806(+)$1	289	152	172	13.5518

#DB
(((.((.........)).))	chr11:70265873-70266133(+)$1	1	10	30	7.5407
.(((((.........)))))	chr3:42660488-42660764(+)$1	1	89	109	8.0146
..((((........))))..	chr17:39846346-39846612(+)$1	1	118	138	12.8020
(((.((........))))).	chr12:69746941-69747182(+)$1	1	176	196	13.6891
.(((((........))))))	chr2:85823689-85824000(+)$1	1	212	232	13.2647
(((.((........)).)))	chr11:61188479-61188748(-)$1	1	213	233	13.6089
.((.((........)).)).	chr6:28872170-28872417(-)$1	1	130	150	12.9157
.(((((........))))).	chrX:48673629-48673897(+)$1	1	47	67	11.1325
((((((........))).))	chr9:95013915-95014201(-)$1	1	205	225	13.7470
(((.((........))...)	chr2:223773510-223773730(+)$1	1	108	128	14.1073
(((.((........))))))	chr4:74286708-74286911(+)$1	1	93	113	13.9614
))((((........))))((	chr19:13054627-13054874(+)$1	1	134	154	12.0725
((.(((........)))...	chr15:85213072-85213393(-)$1	1	99	119	13.9393
((.(((........))))))	chr2:86360303-86360600(+)$1	1	14	34	12.7350
(((.((........)).)))	chr6:31625410-31625664(+)$1	1	184	204	13.5679
((((((........)))..)	chr4:78739996-78740349(-)$1	1	212	232	12.8900
..((((........))))..	chr1:33146018-33146294(+)$1	1	60	80	12.8614
....((........))..))	chr2:120885116-120885368(+)$1	1	149	169	12.9342
((..((........))..))	chr17:48827968-48828209(+)$1	1	43	63	12.7636
((((((........))))))	chr19:2230435-2230686(+)$1	1	86	106	13.5518
((.(((........))))))	chr14:97000813-97001047(+)$1	1	29	49	13.4965
((((((........))))))	chr6:24291049-24291291(-)$1	1	131	151	13.0811
((((((........))))))	chr3:50098915-50099160(+)$1	1	152	172	11.3507
.((.((........)).)).	chr14:23239357-23239615(+)$1	1	205	225	12.8823
(((.(((.......)))..)	chr4:39459823-39460087(-)$1	1	152	172	5.9361
((((((........))))))	chr10:101563802-101564104(+)$1	1	247	267	13.0811
((((((........))))))	chr17:37009850-37010070(-)$1	1	1	21	13.0811
(((((.........))))))	chr1:33252379-33252660(-)$1	1	128	148	7.7480
((((((........))))).	chr4:110661921-110662157(-)$1	1	75	95	13.2815
((((((........)))).)	chr17:41622529-41622805(+)$1	1	102	122	13.0567
((((((........))))))	chr16:28847404-28847664(+)$1	1	117	137	13.0811
(.((((........)))).)	chr10:70516163-70516430(+)$1	1	25	45	12.9003
.(((((........))))).	chr2:114476679-114476941(-)$1	1	175	195	12.6599
((((((........))))))	chr12:53860997-53861244(+)$1	1	126	146	13.0811
((((((........))))))	chrX:128582142-128582400(-)$1	1	158	178	13.5518
..((((........))))..	chr14:96998670-96998961(+)$1	1	9	29	13.1238
((((((.........)))))	chr15:64430209-64430495(+)$1	1	168	188	7.8723
((((((........))))))	chr14:31067517-31067806(+)$1	1	152	172	13.5518

#PSSM
f : 0.18	g : 0.15	c : 0.10	d : 0.07	[ : 0.07	# : 0.05	h : 0.05	e : 0.05	" : 0.05	: : 0.02	i : 0.02	= : 0.02	b : 0.02	! : 0.02	a : 0.02	+ : 0.02	
e : 0.18	f : 0.18	g : 0.15	d : 0.07	c : 0.07	b : 0.07	# : 0.05	h : 0.05	i : 0.02	= : 0.02	! : 0.02	[ : 0.02	" : 0.02	
d : 0.21	e : 0.18	f : 0.18	g : 0.13	[ : 0.07	b : 0.05	c : 0.02	i : 0.02	= : 0.02	# : 0.02	! : 0.02	h : 0.02	
[ : 0.23	e : 0.15	d : 0.15	f : 0.15	c : 0.13	g : 0.07	# : 0.02	! : 0.02	h : 0.02	
b : 0.26	e : 0.15	d : 0.15	c : 0.15	f : 0.15	g : 0.07	h : 0.02	
b : 0.26	d : 0.15	c : 0.15	f : 0.15	e : 0.13	g : 0.07	h : 0.02	r : 0.02	
q : 0.86	r : 0.10	c : 0.02	
q : 0.86	r : 0.10	p : 0.02	
q : 0.86	r : 0.10	p : 0.02	
q : 0.86	r : 0.10	p : 0.02	
q : 0.86	r : 0.10	p : 0.02	
q : 0.86	r : 0.10	p : 0.02	
q : 0.86	r : 0.10	p : 0.02	
q : 0.86	r : 0.10	p : 0.02	
b : 0.23	d : 0.15	c : 0.15	e : 0.13	f : 0.13	r : 0.07	g : 0.07	h : 0.02	
b : 0.26	e : 0.15	d : 0.15	c : 0.15	f : 0.15	g : 0.07	h : 0.02	
c : 0.18	e : 0.15	d : 0.15	f : 0.15	] : 0.10	g : 0.07	2 : 0.05	b : 0.02	3 : 0.02	= : 0.02	h : 0.02	
e : 0.18	f : 0.18	d : 0.15	2 : 0.10	g : 0.07	] : 0.05	c : 0.05	b : 0.05	3 : 0.05	h : 0.05	= : 0.02	
e : 0.21	f : 0.18	d : 0.07	3 : 0.07	2 : 0.07	g : 0.07	c : 0.05	b : 0.05	h : 0.05	] : 0.05	4 : 0.02	i : 0.02	= : 0.02	
f : 0.18	g : 0.15	3 : 0.13	d : 0.10	e : 0.07	c : 0.07	] : 0.05	h : 0.05	4 : 0.02	: : 0.02	i : 0.02	= : 0.02	2 : 0.02	a : 0.02	

#score	468.91873268468385
#seq	38
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456SOS_UTP18_CDS_m1_run1.txt

#BEAR
b[bb[dddd[gggggggpppppppggggggg]dddd4444	chr12:6878988-6879221(+)$1	233	71	111	20.9540
ccc####bb!!gggggggooooooggggggg22bb333cc	chr9:100777604-100777861(+)$1	257	13	53	30.9706
d[bb"""ccc!!ffffffooooooffffff22ccc]bb]d	chr19:2271416-2271649(+)$1	233	140	180	25.1035
ccc####bb!!gggggggooooooggggggg22bb333cc	chr9:100777578-100777803(+)$1	225	39	79	30.9706

#otherMatches

#Seq PSSM
GGCUACUCCCUCUCCUGGUCCCCACaggaggaggagaacg	chr12:6878988-6879221(+)$1	233	71	111	20.9540
CCUAAAGUCAAUUUUUGUUACUGUACagaggaggaagaag	chr9:100777604-100777861(+)$1	257	13	53	30.9706
CUGCUCUGGGGCCACAGGUACUUUCUUGUGCACCUUGCUG	chr19:2271416-2271649(+)$1	233	140	180	25.1035
CCUAAAGUCAAUUUUUGUUACUGUACagaggaggaagaag	chr9:100777578-100777803(+)$1	225	39	79	30.9706

#DB
(.((.((((.(((((((.......))))))).))))....	chr12:6878988-6879221(+)$1	1	71	111	20.9540
(((....((..(((((((......)))))))..))...))	chr9:100777604-100777861(+)$1	1	13	53	30.9706
(.((...(((..((((((......))))))..))).)).)	chr19:2271416-2271649(+)$1	1	140	180	25.1035
(((....((..(((((((......)))))))..))...))	chr9:100777578-100777803(+)$1	1	39	79	30.9706

#PSSM
c : 0.50	b : 0.25	d : 0.25	
[ : 0.50	c : 0.50	
b : 0.50	c : 0.50	
b : 0.50	# : 0.50	
# : 0.50	[ : 0.25	" : 0.25	
# : 0.50	d : 0.25	" : 0.25	
# : 0.50	d : 0.25	" : 0.25	
b : 0.50	d : 0.25	c : 0.25	
b : 0.50	d : 0.25	c : 0.25	
! : 0.50	[ : 0.25	c : 0.25	
! : 0.75	g : 0.25	
g : 0.75	! : 0.25	
g : 0.75	f : 0.25	
g : 0.75	f : 0.25	
g : 0.75	f : 0.25	
g : 0.75	f : 0.25	
g : 0.75	f : 0.25	
g : 0.50	p : 0.25	f : 0.25	
o : 0.75	p : 0.25	
o : 0.75	p : 0.25	
o : 0.75	p : 0.25	
o : 0.75	p : 0.25	
o : 0.75	p : 0.25	
o : 0.75	p : 0.25	
g : 0.75	f : 0.25	
g : 0.75	f : 0.25	
g : 0.75	f : 0.25	
g : 0.75	f : 0.25	
g : 0.75	f : 0.25	
g : 0.75	f : 0.25	
g : 0.75	2 : 0.25	
2 : 0.75	] : 0.25	
2 : 0.50	d : 0.25	c : 0.25	
b : 0.50	d : 0.25	c : 0.25	
b : 0.50	d : 0.25	c : 0.25	
3 : 0.50	d : 0.25	] : 0.25	
3 : 0.50	4 : 0.25	b : 0.25	
3 : 0.50	4 : 0.25	b : 0.25	
c : 0.50	4 : 0.25	] : 0.25	
c : 0.50	4 : 0.25	d : 0.25	

#score	107.99877648147503
#seq	4
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_CDS_m2_run2.txt

#BEAR
[dddd[cccmmmmccc]ddd	chr2:178081371-178081611(+)$1	240	100	120	8.6449
!!a[eeeeemmmmeeeee]a	chr22:20073523-20073796(+)$1	273	147	167	9.0849
gggggggooooooggggggg	chr16:31196228-31196553(+)$1	325	266	286	8.1437
eeeee[cccmmmmccc]eee	chr6:86324670-86324932(-)$1	262	56	76	9.0181
::gggggggmmmmggggggg	chr7:26233145-26233415(-)$1	270	83	103	8.3772
ggggggg!!==========[	chr6:26285504-26285803(-)$1	299	24	44	7.2287
iiiiiiiiimmmmiiiiiii	chr18:43671546-43671779(-)$1	233	147	167	10.2967
eegggggggmmmmggggggg	chr18:43669718-43670001(-)$1	283	215	235	10.0544
f!!a[ddddmmmmdddda22	chr16:28841029-28841298(+)$1	269	189	209	7.4053
{Agggggggmmmmggggggg	chr16:89975240-89975560(+)$1	320	27	47	8.5434
iiiiiiiiimmmmiiiiiii	chr6:26027329-26027553(-)$1	224	182	202	10.2967
ccc[ccc[ammmma]ccc33	chr22:50694468-50694722(-)$1	254	194	214	9.0271
dd!!eeeeemmmmeeeee]d	chr19:805384-805661(+)$1	277	99	119	8.7996
FFgggggggmmmmggggggg	chr5:179048268-179048515(-)$1	247	8	28	9.5294
ee!!eeeeemmmmeeeeeee	chr17:76200657-76200965(+)$1	308	38	58	8.7891
ccc[eeeeemmmmeeeee22	chrX:152957477-152957728(+)$1	251	149	169	8.6705
gggggggooooooggggggg	chr16:31196353-31196604(+)$1	251	141	161	8.1437
ccc[a[cccmmmmccca]cc	chr16:31201578-31201815(+)$1	237	186	206	9.1951
[eeeee[bbmmmmbbeeeee	chr22:50694421-50694668(-)$1	247	91	111	7.6442
[dddd[cccmmmmccc]ddd	chr2:178081324-178081571(+)$1	247	147	167	8.6449
ff[cccccclllccc333cc	chr8:110346553-110346808(+)$1	255	37	57	6.6514
iiiiiiiiimmmmiiiiiii	chr6:26027307-26027529(-)$1	222	158	178	10.2967
ggggggg!!==========[	chr6:26285603-26285848(-)$1	245	69	89	7.2287

#otherMatches

#Seq PSSM
GGCCGUGGUGGAAACUUUGG	chr2:178081371-178081611(+)$1	240	100	120	8.6449
CUGCUGAGGACCCCUUCAAC	chr22:20073523-20073796(+)$1	273	147	167	9.0849
CAUGGGGUAGGUGUCUCAUG	chr16:31196228-31196553(+)$1	325	266	286	8.1437
UUUUCAAGUUGGAGCUAGAG	chr6:86324670-86324932(-)$1	262	56	76	9.0181
AGGCUUAUUUUAUAAUAGGU	chr7:26233145-26233415(-)$1	270	83	103	8.3772
GCUUUGCCUUGGCGUUUAGG	chr6:26285504-26285803(-)$1	299	24	44	7.2287
AGAUUUUGGUGUUUUAGGAU	chr18:43671546-43671779(-)$1	233	147	167	10.2967
AGGUUUAAUGUUCGUUAGAU	chr18:43669718-43670001(-)$1	283	215	235	10.0544
CGAGAGCUGCGUGCGGCCCA	chr16:28841029-28841298(+)$1	269	189	209	7.4053
GCAGCUCUGAGGUCAGGGCU	chr16:89975240-89975560(+)$1	320	27	47	8.5434
GCCUUGCUAGGCGUGGUGGG	chr6:26027329-26027553(-)$1	224	182	202	10.2967
GCUACACGCAGACGGGUGAG	chr22:50694468-50694722(-)$1	254	194	214	9.0271
AUUUCUAGGUGCACCUGGUA	chr19:805384-805661(+)$1	277	99	119	8.7996
UCACAAGUUAUGUAAUUUGU	chr5:179048268-179048515(-)$1	247	8	28	9.5294
GCCAAGCUGCCUCCAGCUGU	chr17:76200657-76200965(+)$1	308	38	58	8.7891
CACACCUGUGGCAACGGGAG	chrX:152957477-152957728(+)$1	251	149	169	8.6705
CAUGGGGUAGGUGUCUCAUG	chr16:31196353-31196604(+)$1	251	141	161	8.1437
CUUUGAUAUAUUGGUACUGA	chr16:31201578-31201815(+)$1	237	186	206	9.1951
GUGGUGACCCGGUGGUACCG	chr22:50694421-50694668(-)$1	247	91	111	7.6442
GGCCGUGGUGGAAACUUUGG	chr2:178081324-178081571(+)$1	247	147	167	8.6449
CGAGCUACUGAGGGUCUAAG	chr8:110346553-110346808(+)$1	255	37	57	6.6514
GCCUUGCUAGGCGUGGUGGG	chr6:26027307-26027529(-)$1	222	158	178	10.2967
GCUUUGCCUUGGCGUUUAGG	chr6:26285603-26285848(-)$1	245	69	89	7.2287

#DB
.((((.(((....))).)))	chr2:178081371-178081611(+)$1	1	100	120	8.6449
..(.(((((....))))).)	chr22:20073523-20073796(+)$1	1	147	167	9.0849
(((((((......)))))))	chr16:31196228-31196553(+)$1	1	266	286	8.1437
(((((.(((....))).)))	chr6:86324670-86324932(-)$1	1	56	76	9.0181
..(((((((....)))))))	chr7:26233145-26233415(-)$1	1	83	103	8.3772
(((((((..((((((((((.	chr6:26285504-26285803(-)$1	1	24	44	7.2287
(((((((((....)))))))	chr18:43671546-43671779(-)$1	1	147	167	10.2967
))(((((((....)))))))	chr18:43669718-43670001(-)$1	1	215	235	10.0544
(..(.((((....)))))..	chr16:28841029-28841298(+)$1	1	189	209	7.4053
.((((((((....)))))))	chr16:89975240-89975560(+)$1	1	27	47	8.5434
(((((((((....)))))))	chr6:26027329-26027553(-)$1	1	182	202	10.2967
(((.(((.(....).)))..	chr22:50694468-50694722(-)$1	1	194	214	9.0271
((..(((((....))))).)	chr19:805384-805661(+)$1	1	99	119	8.7996
(((((((((....)))))))	chr5:179048268-179048515(-)$1	1	8	28	9.5294
((..(((((....)))))))	chr17:76200657-76200965(+)$1	1	38	58	8.7891
(((.(((((....)))))..	chrX:152957477-152957728(+)$1	1	149	169	8.6705
(((((((......)))))))	chr16:31196353-31196604(+)$1	1	141	161	8.1437
(((.(.(((....)))).))	chr16:31201578-31201815(+)$1	1	186	206	9.1951
.(((((.((....)))))))	chr22:50694421-50694668(-)$1	1	91	111	7.6442
.((((.(((....))).)))	chr2:178081324-178081571(+)$1	1	147	167	8.6449
((.((((((...)))...))	chr8:110346553-110346808(+)$1	1	37	57	6.6514
(((((((((....)))))))	chr6:26027307-26027529(-)$1	1	158	178	10.2967
(((((((..((((((((((.	chr6:26285603-26285848(-)$1	1	69	89	7.2287

#PSSM
g : 0.17	[ : 0.13	e : 0.13	i : 0.13	c : 0.13	f : 0.08	! : 0.04	: : 0.04	{ : 0.04	d : 0.04	F : 0.04	
g : 0.17	e : 0.17	d : 0.13	i : 0.13	c : 0.13	! : 0.08	: : 0.04	A : 0.04	F : 0.04	f : 0.04	
g : 0.34	i : 0.13	! : 0.13	c : 0.13	d : 0.08	e : 0.08	a : 0.04	[ : 0.04	
g : 0.34	[ : 0.17	i : 0.13	d : 0.08	e : 0.08	! : 0.08	a : 0.04	c : 0.04	
g : 0.34	e : 0.26	i : 0.13	d : 0.08	c : 0.08	[ : 0.04	a : 0.04	
g : 0.34	e : 0.21	[ : 0.17	i : 0.13	c : 0.08	d : 0.04	
g : 0.34	c : 0.26	e : 0.17	i : 0.13	d : 0.04	[ : 0.04	
c : 0.21	e : 0.17	g : 0.17	i : 0.13	o : 0.08	! : 0.08	d : 0.04	[ : 0.04	b : 0.04	
c : 0.21	e : 0.17	g : 0.17	i : 0.13	o : 0.08	! : 0.08	d : 0.04	a : 0.04	b : 0.04	
m : 0.78	o : 0.08	= : 0.08	l : 0.04	
m : 0.78	o : 0.08	= : 0.08	l : 0.04	
m : 0.78	o : 0.08	= : 0.08	l : 0.04	
m : 0.78	o : 0.08	= : 0.08	c : 0.04	
g : 0.26	c : 0.21	e : 0.17	i : 0.13	= : 0.08	d : 0.04	a : 0.04	b : 0.04	
g : 0.26	c : 0.21	e : 0.17	i : 0.13	= : 0.08	d : 0.04	] : 0.04	b : 0.04	
g : 0.26	c : 0.21	e : 0.21	i : 0.13	= : 0.08	d : 0.04	3 : 0.04	
g : 0.26	e : 0.21	] : 0.13	i : 0.13	= : 0.08	d : 0.04	c : 0.04	a : 0.04	3 : 0.04	
e : 0.26	g : 0.26	i : 0.13	d : 0.08	= : 0.08	a : 0.04	c : 0.04	] : 0.04	3 : 0.04	
g : 0.26	e : 0.13	i : 0.13	d : 0.08	] : 0.08	= : 0.08	2 : 0.08	c : 0.08	3 : 0.04	
g : 0.26	d : 0.13	e : 0.13	i : 0.13	[ : 0.08	2 : 0.08	c : 0.08	a : 0.04	3 : 0.04	

#score	199.7154614553565
#seq	23
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_UTR_m3_run1.txt

#BEAR
b[ccc!!ddddnnnnnddddccc]	chr5:140021290-140021584(+)$1	294	157	181	11.1239
ceeeee[ddddmmmmdddd333ee	chr19:4501801-4502049(+)$1	248	178	202	15.0807
f[bb"""ddddmmmmdddd22bb]	chr3:50358606-50358876(-)$1	270	181	205	14.4891
dddd!!ddddoooooodddd22dd	chr9:111819424-111819747(-)$1	323	90	114	10.6472
eeee!!ddddnnnnndddd4444e	chr5:137909674-137909914(-)$1	240	3	27	11.8262
&&bb"""ddddmmmmdddd333bb	chr11:105967317-105967609(+)$1	292	149	173	14.1480
d!!ccc[ddddmmmmddddccc44	chr4:152020796-152021023(+)$1	227	133	157	13.9433
ffff"""ddddmmmmdddd333ff	chr2:27354559-27354826(-)$1	267	60	84	15.5212
eee####ddddmmmmdddd22eee	chr16:88876434-88876697(-)$1	263	203	227	15.2696
[ccc[a[ddddnnnnndddd]a]c	chr9:95992022-95992251(+)$1	229	104	128	11.2460
b!!bb!!ddddmmmmddddbb]bb	chr12:56563217-56563501(-)$1	284	19	43	12.6205
ffffff[ddddmmmmdddd333ff	chr22:47158560-47158849(+)$1	289	220	244	14.2030
gggggg!!cccmmmmccc333ggg	chr20:398068-398314(+)$1	246	210	234	10.3413
gggggg!!ddddllldddd22ggg	chr16:75271066-75271375(-)$1	309	270	294	11.7313
bb!!bb[ddddmmmmdddd]bb22	chr6:74230573-74230814(-)$1	241	21	45	12.6524
eeeee!!ddddmmmmdddd]eeee	chr7:150774834-150775097(-)$1	263	35	59	14.3550
dddd"""ddddnnnnndddd]ddd	chr11:6501152-6501435(-)$1	283	131	155	11.4266
ggg[bb[ddddmmmmdddd]bb]g	chr11:77330626-77330884(-)$1	258	44	68	13.2237
!!ccc!!ddddmmmmdddd333cc	chr16:29815925-29816195(+)$1	270	32	56	16.1530
eeee"""ddddmmmmdddd333ee	chr6:31929586-31929808(+)$1	222	122	146	16.3531
#dddda[ddddmmmmdddd22a]d	chr19:1104628-1104876(+)$1	248	197	221	14.6347
:eeeee[ddddmmmmddddeeeee	chr6:36568839-36569092(+)$1	253	221	245	12.2155
eeee"""ddddmmmmdddd4444e	chr2:42531508-42531741(+)$1	233	98	122	16.0408
ee[a"""ddddlllddddaeeeee	chr3:49723537-49723812(-)$1	275	196	220	11.4959
bb$$$$$ddddmmmmdddd4444b	chr1:24975185-24975472(+)$1	287	173	197	13.9201
eeeebb[ddddmmmmdddd]bb22	chr14:35099006-35099392(-)$1	386	61	85	13.1048
::ccc!!ddddmmmmdddd]ccc:	chr9:116997777-116998023(+)$1	246	215	239	12.1187
###ccc[ddddmmmmdddd]ccc2	chr9:21817897-21818169(+)$1	272	28	52	14.2016
[dddd!!ddddmmmmdddd22ddd	chr2:27884865-27885148(-)$1	283	86	110	14.8110
cccdddd[ddddllldddd333dd	chr17:38191438-38191706(-)$1	268	95	119	11.4193
eeee####cccmmmmccc333eee	chr14:21546447-21546705(+)$1	258	32	56	11.1503
ddd####ddddmmmmdddd333dd	chr1:231361057-231361393(-)$1	336	106	130	15.8023
fffbb!!ddddmmmmdddd4444b	chr2:101620619-101620922(+)$1	303	199	223	14.5323
eeee"""ddddnnnnndddd333e	chr15:96877184-96877465(+)$1	281	77	101	12.7864
:eeeee[ddddmmmmdddd]eeee	chr15:76206319-76206668(+)$1	349	185	209	12.8672
##dddd[ddddmmmmdddd]dddd	chr2:220251544-220251869(-)$1	325	280	304	13.6381
dddd"""ddddmmmmdddd333dd	chr2:9770926-9771169(-)$1	243	78	102	16.0297
eee[cccddddmmmmdddd]ccc2	chr10:77158304-77158560(-)$1	256	119	143	13.4774
[ccc!!ddddoooooodddd]ccc	chr16:28844382-28844624(+)$1	242	117	141	10.7692
g"""cccddddmmmmdddd]ccc7	chr19:1271994-1272232(+)$1	238	134	158	13.0165
cccccc[ddddmmmmdddd22ccc	chr16:88723852-88724103(-)$1	251	161	185	14.5925
###ccc[ddddmmmmdddd]ccc4	chr1:155880425-155880713(-)$1	288	68	92	14.3802
iiiii!!ddddmmmmdddd22iii	chr11:47433716-47434030(+)$1	314	199	223	14.9408
!!ccc!!ddddmmmmdddd4444c	chr6:167347497-167347724(-)$1	227	75	99	15.7879
eeee"""ddddnnnnndddd4444	chr22:39111801-39112078(+)$1	277	207	231	12.5385
d[dddd[ddddmmmmdddd]dddd	chr19:18569010-18569281(-)$1	271	237	261	13.5420
!a[ddddddddmmmmdddd]dddd	chr2:74057830-74058120(+)$1	290	227	251	12.8784

#otherMatches

#Seq PSSM
CACAUAGGCUGGAGGGCAGCAUGC	chr5:140021290-140021584(+)$1	294	157	181	11.1239
GAGGGCACGGGGGGACUCGGAGGC	chr19:4501801-4502049(+)$1	248	178	202	15.0807
CCCGACCGGGCGCAGGCCCCACGU	chr3:50358606-50358876(-)$1	270	181	205	14.4891
UUCUGUUCUUUAGAUUAAGAUGGG	chr9:111819424-111819747(-)$1	323	90	114	10.6472
CUUAAUGUAUUUUAUAUACUAAGU	chr5:137909674-137909914(-)$1	240	3	27	11.8262
UAGGUUCCAUCUCAGGAUGAUUCC	chr11:105967317-105967609(+)$1	292	149	173	14.1480
UAGAUCGCGGCGUAGGCCGGAUGG	chr4:152020796-152021023(+)$1	227	133	157	13.9433
GAACAUGCUUUCCAGAAAGAGAGU	chr2:27354559-27354826(-)$1	267	60	84	15.5212
UCUGCUGGCCACUGGUGGUAAGGG	chr16:88876434-88876697(-)$1	263	203	227	15.2696
GAUGACCUCAGGGACGCUGAAGAC	chr9:95992022-95992251(+)$1	229	104	128	11.2460
CAGUCGAUCCUgagaaggagaagg	chr12:56563217-56563501(-)$1	284	19	43	12.6205
GGUCAGAGGUCAGGUGGCCGCGUU	chr22:47158560-47158849(+)$1	289	220	244	14.2030
GAGGGCGACACUGGGGUGAAGGcu	chr20:398068-398314(+)$1	246	210	234	10.3413
GCUUCCCAGCCAGUAUGGCCAGGA	chr16:75271066-75271375(-)$1	309	270	294	11.7313
GAGAACCGUAUAUAAGUGCAGUAG	chr6:74230573-74230814(-)$1	241	21	45	12.6524
ACAGUCAACAUCUUGAUGUCACUG	chr7:150774834-150775097(-)$1	263	35	59	14.3550
CUAUAGGACCUCCAGCAGGUGAUG	chr11:6501152-6501435(-)$1	283	131	155	11.4266
CAGCAGAGGGCACUAGCUUCCUUC	chr11:77330626-77330884(-)$1	258	44	68	13.2237
AGUUGCAUAAUAAGAAUUAACCCA	chr16:29815925-29816195(+)$1	270	32	56	16.1530
UCAGAAACAGGCCAUCCUGCACUU	chr6:31929586-31929808(+)$1	222	122	146	16.3531
GGCCCCAGCGUGCAGGCGCAGGAG	chr19:1104628-1104876(+)$1	248	197	221	14.6347
CCUUGGCUUUAAUAGUGAAUCAAG	chr6:36568839-36569092(+)$1	253	221	245	12.2155
GUCUGUCUCUUUUCUAGGAACCAG	chr2:42531508-42531741(+)$1	233	98	122	16.0408
GGAGAACUUCUGCCGGAACCCCGA	chr3:49723537-49723812(-)$1	275	196	220	11.4959
UCCAAAAUGAUGCAAAUCAACCUG	chr1:24975185-24975472(+)$1	287	173	197	13.9201
GGAGCAGCCAUGAUGGUGGGUGUU	chr14:35099006-35099392(-)$1	386	61	85	13.1048
CUUGGCUUCCUUCCUAGGGUCCAU	chr9:116997777-116998023(+)$1	246	215	239	12.1187
UAGUCUGUGGUCAUUGCUAGAGAA	chr9:21817897-21818169(+)$1	272	28	52	14.2016
ACAAUGAAUCUGCAAAGGUGAGUU	chr2:27884865-27885148(-)$1	283	86	110	14.8110
UCCCUGUAGCUGUCACGGCAAAGC	chr17:38191438-38191706(-)$1	268	95	119	11.4193
GGGUGGAGACUCUCUGGUGGAACC	chr14:21546447-21546705(+)$1	258	32	56	11.1503
CUUAAAUUCUGAAAUCAGGCCCAA	chr1:231361057-231361393(-)$1	336	106	130	15.8023
UAUCAGUUCAGUAAUUUGGUUAAU	chr2:101620619-101620922(+)$1	303	199	223	14.5323
AGGCUGGUCAUUAACUGUGGAGUG	chr15:96877184-96877465(+)$1	281	77	101	12.7864
AACAAUGCCAAGUCCUUGGGAUUG	chr15:76206319-76206668(+)$1	349	185	209	12.8672
AAAGGCAGGUCCCUAGGCUGGUCU	chr2:220251544-220251869(-)$1	325	280	304	13.6381
UCGCGGCCGCGGAGACGUGAAGGU	chr2:9770926-9771169(-)$1	243	78	102	16.0297
ggGAUCACGGCCCAGGCUGCUGAC	chr10:77158304-77158560(-)$1	256	119	143	13.4774
UCUCCCGUCUCCUCCAAGACAGAG	chr16:28844382-28844624(+)$1	242	117	141	10.7692
CUUUAGGCUGGACACUCAGACCUU	chr19:1271994-1272232(+)$1	238	134	158	13.0165
UGCCCUCCAGCCUCAGCUGCAAGG	chr16:88723852-88724103(-)$1	251	161	185	14.5925
UCGCCGUGGUGUCUCCAUCCUGGA	chr1:155880425-155880713(-)$1	288	68	92	14.3802
GCAGCAGCAGCAACAGCUGGGGCU	chr11:47433716-47434030(+)$1	314	199	223	14.9408
UAACUUUUUUAAAUUUAAAUUUUA	chr6:167347497-167347724(-)$1	227	75	99	15.7879
GCGGGAACGGCAAGAAGCUGGGGG	chr22:39111801-39112078(+)$1	277	207	231	12.5385
CCAGCAGCUGCUGAAGCGGGUGCU	chr19:18569010-18569281(-)$1	271	237	261	13.5420
AGAGGUGAAUGAAGACAUUCCACC	chr2:74057830-74058120(+)$1	290	227	251	12.8784

#DB
(.(((..((((.....))))))).	chr5:140021290-140021584(+)$1	1	157	181	11.1239
)(((((.((((....))))...))	chr19:4501801-4502049(+)$1	1	178	202	15.0807
(.((...((((....))))..)).	chr3:50358606-50358876(-)$1	1	181	205	14.4891
((((..((((......))))..))	chr9:111819424-111819747(-)$1	1	90	114	10.6472
((((..((((.....))))....)	chr5:137909674-137909914(-)$1	1	3	27	11.8262
..((...((((....))))...))	chr11:105967317-105967609(+)$1	1	149	173	14.1480
(..(((.((((....)))))))..	chr4:152020796-152021023(+)$1	1	133	157	13.9433
((((...((((....))))...))	chr2:27354559-27354826(-)$1	1	60	84	15.5212
(((....((((....))))..)))	chr16:88876434-88876697(-)$1	1	203	227	15.2696
.(((.(.((((.....)))).).)	chr9:95992022-95992251(+)$1	1	104	128	11.2460
(..((..((((....)))))).))	chr12:56563217-56563501(-)$1	1	19	43	12.6205
((((((.((((....))))...))	chr22:47158560-47158849(+)$1	1	220	244	14.2030
((((((..(((....)))...)))	chr20:398068-398314(+)$1	1	210	234	10.3413
((((((..((((...))))..)))	chr16:75271066-75271375(-)$1	1	270	294	11.7313
((..((.((((....)))).))..	chr6:74230573-74230814(-)$1	1	21	45	12.6524
(((((..((((....)))).))))	chr7:150774834-150775097(-)$1	1	35	59	14.3550
((((...((((.....)))).)))	chr11:6501152-6501435(-)$1	1	131	155	11.4266
(((.((.((((....)))).)).)	chr11:77330626-77330884(-)$1	1	44	68	13.2237
..(((..((((....))))...))	chr16:29815925-29816195(+)$1	1	32	56	16.1530
((((...((((....))))...))	chr6:31929586-31929808(+)$1	1	122	146	16.3531
.(((((.((((....))))..).)	chr19:1104628-1104876(+)$1	1	197	221	14.6347
.(((((.((((....)))))))))	chr6:36568839-36569092(+)$1	1	221	245	12.2155
((((...((((....))))....)	chr2:42531508-42531741(+)$1	1	98	122	16.0408
((.(...((((...))))))))))	chr3:49723537-49723812(-)$1	1	196	220	11.4959
((.....((((....))))....)	chr1:24975185-24975472(+)$1	1	173	197	13.9201
((((((.((((....)))).))..	chr14:35099006-35099392(-)$1	1	61	85	13.1048
..(((..((((....)))).))).	chr9:116997777-116998023(+)$1	1	215	239	12.1187
...(((.((((....)))).))).	chr9:21817897-21818169(+)$1	1	28	52	14.2016
.((((..((((....))))..)))	chr2:27884865-27885148(-)$1	1	86	110	14.8110
(((((((.((((...))))...))	chr17:38191438-38191706(-)$1	1	95	119	11.4193
((((....(((....)))...)))	chr14:21546447-21546705(+)$1	1	32	56	11.1503
(((....((((....))))...))	chr1:231361057-231361393(-)$1	1	106	130	15.8023
(((((..((((....))))....)	chr2:101620619-101620922(+)$1	1	199	223	14.5323
((((...((((.....))))...)	chr15:96877184-96877465(+)$1	1	77	101	12.7864
.(((((.((((....)))).))))	chr15:76206319-76206668(+)$1	1	185	209	12.8672
..((((.((((....)))).))))	chr2:220251544-220251869(-)$1	1	280	304	13.6381
((((...((((....))))...))	chr2:9770926-9771169(-)$1	1	78	102	16.0297
(((.(((((((....)))).))).	chr10:77158304-77158560(-)$1	1	119	143	13.4774
.(((..((((......)))).)))	chr16:28844382-28844624(+)$1	1	117	141	10.7692
(...(((((((....)))).))).	chr19:1271994-1272232(+)$1	1	134	158	13.0165
((((((.((((....))))..)))	chr16:88723852-88724103(-)$1	1	161	185	14.5925
...(((.((((....)))).))).	chr1:155880425-155880713(-)$1	1	68	92	14.3802
(((((..((((....))))..)))	chr11:47433716-47434030(+)$1	1	199	223	14.9408
..(((..((((....))))....)	chr6:167347497-167347724(-)$1	1	75	99	15.7879
((((...((((.....))))....	chr22:39111801-39112078(+)$1	1	207	231	12.5385
(.((((.((((....)))).))))	chr19:18569010-18569281(-)$1	1	237	261	13.5420
.(.((((((((....)))).))))	chr2:74057830-74058120(+)$1	1	227	251	12.8784

#PSSM
e : 0.23	d : 0.12	b : 0.08	f : 0.08	g : 0.08	# : 0.08	c : 0.06	[ : 0.06	! : 0.06	: : 0.06	& : 0.02	i : 0.02	
e : 0.29	d : 0.12	! : 0.08	c : 0.08	[ : 0.06	f : 0.06	g : 0.06	# : 0.06	b : 0.04	& : 0.02	: : 0.02	" : 0.02	i : 0.02	a : 0.02	
e : 0.27	c : 0.17	d : 0.17	! : 0.06	f : 0.06	g : 0.06	b : 0.04	[ : 0.04	# : 0.04	$ : 0.02	" : 0.02	i : 0.02	
e : 0.23	c : 0.21	d : 0.19	b : 0.08	f : 0.04	# : 0.04	g : 0.04	[ : 0.04	! : 0.02	a : 0.02	$ : 0.02	" : 0.02	i : 0.02	
c : 0.21	" : 0.21	d : 0.12	b : 0.10	e : 0.08	! : 0.06	# : 0.06	g : 0.04	[ : 0.02	f : 0.02	$ : 0.02	i : 0.02	
! : 0.25	" : 0.21	c : 0.12	d : 0.08	e : 0.06	# : 0.06	b : 0.06	a : 0.04	g : 0.04	f : 0.02	$ : 0.02	
[ : 0.31	! : 0.23	" : 0.21	d : 0.10	# : 0.06	c : 0.04	$ : 0.02	
d : 0.91	! : 0.04	[ : 0.02	# : 0.02	
d : 0.95	c : 0.04	
d : 0.95	c : 0.04	
d : 0.89	o : 0.04	c : 0.04	n : 0.02	
m : 0.76	n : 0.12	o : 0.04	d : 0.04	l : 0.02	
m : 0.76	n : 0.12	l : 0.06	o : 0.04	
m : 0.76	n : 0.12	l : 0.06	o : 0.04	
m : 0.76	n : 0.12	o : 0.04	l : 0.04	d : 0.02	
d : 0.80	n : 0.10	o : 0.04	c : 0.04	
d : 0.95	c : 0.04	
d : 0.95	c : 0.04	
d : 0.93	3 : 0.04	a : 0.02	
] : 0.27	3 : 0.23	d : 0.14	2 : 0.14	4 : 0.10	e : 0.04	c : 0.02	b : 0.02	
3 : 0.25	2 : 0.17	c : 0.14	4 : 0.12	b : 0.08	e : 0.08	] : 0.06	d : 0.06	
3 : 0.21	c : 0.19	4 : 0.12	e : 0.12	d : 0.10	b : 0.08	a : 0.04	g : 0.04	2 : 0.02	] : 0.02	i : 0.02	
c : 0.19	d : 0.19	e : 0.17	4 : 0.14	b : 0.06	] : 0.06	f : 0.04	g : 0.04	2 : 0.04	3 : 0.02	i : 0.02	
e : 0.23	d : 0.21	c : 0.10	b : 0.08	2 : 0.08	4 : 0.06	g : 0.06	] : 0.04	f : 0.04	: : 0.02	7 : 0.02	i : 0.02	

#score	633.0494206527874
#seq	47
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_CDS_m2_run2.txt

#BEAR
[ggggggg!!bbqqqqqqqqbbggggggg99	chr17:42945554-42945755(-)$1	201	81	112	15.1841
eeee[bb!!cccrrrrrrrrrccc22bbeee	chr11:32616396-32616613(+)$1	217	156	187	11.0485
========[cccooooooccc==========	chrX:153062811-153063044(+)$1	233	63	94	10.3836
d[dddd[eeeeeqqqqqqqqeeeeedddddd	chr10:81113485-81113743(+)$1	258	24	55	13.1470
##ccc!!eeeeerrrrrrrrreeeeeccc44	chr1:37980170-37980413(-)$1	243	180	211	11.8472
[ccc[ccc!!cccooooooccc333cccccc	chr2:172840995-172841282(+)$1	287	29	60	10.5078
fffccc"""bbssssssssssbb333ccc33	chr11:18418371-18418579(+)$1	208	50	81	11.9234
fff[bbddddbbqqqqqqqqbb22dddd22b	chr11:67352126-67352335(+)$1	209	35	66	13.6041
ggggggccccccqqqqqqqqccc]ccc333g	chr1:10356541-10356816(+)$1	275	194	225	17.6481
""ccc####cccqqqqqqqqccc]ccc4444	chr22:29754773-29755061(-)$1	288	199	230	18.2650
!!ccc!!bbcccqqqqqqqqccc]bb22ccc	chr6:32943183-32943399(+)$1	216	45	76	15.8463
[bb!!ccc[bbqqqqqqqqbbccc22bb]hh	chr11:18420902-18421120(+)$1	218	160	191	12.9453
a!!eeeeeddddqqqqqqqqdddd333eeee	chr14:23344288-23344541(+)$1	253	57	88	14.4615
!eeeeeffffffqqqqqqqqffffff4444e	chr3:158519803-158520064(+)$1	261	65	96	14.9350
b[ccc####cccqqqqqqqqccc333ccc22	chr19:11548683-11548893(+)$1	210	68	99	17.8085
!!bb!!ccccccqqqqqqqqccc]ccc22bb	chr7:73663974-73664178(-)$1	204	85	116	16.5236
b[ccc####cccqqqqqqqqccc4444ccc4	chr3:50289843-50290063(+)$1	220	48	79	17.4550
d[bb!!ffffffqqqqqqqqffffff4444b	chr19:58899468-58899682(+)$1	214	128	159	15.2763
+ffffff!!cccqqqqqqqqccc333fffff	chr7:11101510-11101813(+)$1	303	109	140	15.5672
iiiiiiiii!!aqqqqqqqqa22iiiiiiii	chr9:128099699-128099920(+)$1	221	175	206	15.3843
"""ccc[ddddrrrrrrrrrdddd]ccc444	chr1:1735911-1736116(-)$1	205	121	152	12.1029
cbb[bb[eeeeeqqqqqqqqeeeee]bb]bb	chr3:141622443-141622657(+)$1	214	77	108	13.6051
ee"""gggggggqqqqqqqqggggggg4444	chr10:61554195-61554433(-)$1	238	95	126	16.6825
ffffff[eeeeeqqqqqqqqeeeee666666	chr3:128356630-128356893(-)$1	263	145	176	12.9030
####gggggggrrrrrrrrrgggggggffff	chr2:201784959-201785217(-)$1	258	114	145	11.4524
hhhh[ccc[cccqqqqqqqqccc]ccc22hh	chr2:217364613-217364818(+)$1	205	93	124	16.0194
fffff[aeeeeeqqqqqqqqeeeee>>>>>>	chr3:45153716-45153964(-)$1	248	77	108	14.4009
[a!!gggggggssssssssssggggggg22a	chr11:32956555-32956777(+)$1	222	117	148	11.8487
ggg[ccc[ddddqqqqqqqqdddd4444ccc	chr10:103917838-103918071(+)$1	233	148	179	15.7165
!!ccc####cccqqqqqqqqccc333ccc22	chr4:119659365-119659586(-)$1	221	89	120	18.2232
eeeeeee"""bbqqqqqqqqbb4444eeeee	chr20:33148571-33148814(-)$1	243	71	102	14.3297
e[cccccc!!bbqqqqqqqqbb22ccc]ccc	chr1:17736414-17736648(-)$1	234	104	135	15.8009
dd[bb####cccrrrrrrrrrccc4444bb]	chr17:29562873-29563141(+)$1	268	123	154	11.8902
ff"""dddd[bbqqqqqqqqbb333dddd22	chr19:17212563-17212813(+)$1	250	175	206	14.7946
bb[eeeee[cccqqqqqqqqccc]eeeee]b	chr5:71493712-71493929(+)$1	217	57	88	15.1924
ddd!!ccc[cccssssssssssccc]ccc22	chr7:2416484-2416690(+)$1	206	28	59	11.4730
!ccc[gggggggrrrrrrrrrgggggggccc	chr2:27438241-27438496(+)$1	255	68	99	12.0697
d[a[gggggggrrrrrrrrrggggggg]a]d	chr19:18423330-18423535(-)$1	205	152	183	12.0979
ggggbb[a!!bbqqqqqqqqbb22a]bb444	chr1:1309307-1309531(-)$1	224	56	87	15.7798
gggg!!ddddbbqqqqqqqqbb22dddd22g	chr5:157244363-157244633(-)$1	270	118	149	14.7413
======ffffffqqqqqqqqffffff>>>>>	chr14:102467812-102468021(+)$1	209	130	161	15.2621
iiiiiii!!cccqqqqqqqqccc333iiiii	chr7:91752461-91752684(-)$1	223	62	93	17.7876
iiiiiii!!cccqqqqqqqqccc333iiiii	chr7:91752447-91752661(-)$1	214	39	70	17.7876
fff!!gggggggqqqqqqqqggggggg22ff	chr4:151793745-151794008(-)$1	263	32	63	15.5904
###gggggggssssssssssgggggggccce	chr4:122605731-122605998(-)$1	267	44	75	11.0531
ccc[gggggggrrrrrrrrrgggggggccc:	chr2:27438132-27438343(+)$1	211	178	209	11.2412
hhhhhhbb[cccqqqqqqqqccc]bb77777	chr19:14071274-14071492(+)$1	218	169	200	13.4503
[bb####eeeeeqqqqqqqqeeeee]bbddd	chr11:810232-810435(+)$1	203	31	62	14.0595
eeeeeccc[cccqqqqqqqqccc]ccc::::	chr11:32610460-32610682(+)$1	222	16	47	13.2498
gggeeeee[cccqqqqqqqqccceeeee:cc	chr1:12065881-12066088(+)$1	207	137	168	14.7349
eeee!!bbddddqqqqqqqqdddd]bb333e	chr1:45981227-45981432(-)$1	205	71	102	14.6705
==[a!!ffffffqqqqqqqqffffff22a==	chr17:8285426-8285629(-)$1	203	160	191	15.0992
cbb[ccc[ddddrrrrrrrrrddddccc22b	chr9:131298649-131298856(+)$1	207	156	187	10.8168

#otherMatches

#Seq PSSM
AUCUACUUCAACCCUAAGACGUAAGUAGAGU	chr17:42945554-42945755(-)$1	201	81	112	15.1841
UCAUGAUGUAAGUAGUUUAUCCUUUAAUGUG	chr11:32616396-32616613(+)$1	217	156	187	11.0485
GGGGCAGAAGGUGACCCUGCCUUUGUUCCCU	chrX:153062811-153063044(+)$1	233	63	94	10.3836
ACGUCGUGAAGAAAAUAGAAUCUUUCGGCUC	chr10:81113485-81113743(+)$1	258	24	55	13.1470
ACGGCAUGGGGCUCCGCGCCCGCCCCGCCUC	chr1:37980170-37980413(-)$1	243	180	211	11.8472
GAUUGCAAAAGAUGAAGAAAUUAUAUUGAGU	chr2:172840995-172841282(+)$1	287	29	60	10.5078
UCUUCUAAAGGAAGAACAGACCCCCCAGAAU	chr11:18418371-18418579(+)$1	208	50	81	11.9234
GGGCAGCUCCCCAAGUUCCAGGACGGAGACC	chr11:67352126-67352335(+)$1	209	35	66	13.6041
GAGGUUUGCCAUCUUCAGCAAUGUGCACAUG	chr1:10356541-10356816(+)$1	275	194	225	17.6481
CCGGAAGUGCCUGAAGGACGAGGAUCCAUAU	chr22:29754773-29755061(-)$1	288	199	230	18.2650
UUAUUGGGCUGCUUCAGAGUGUAUGCAAGAU	chr6:32943183-32943399(+)$1	216	45	76	15.8463
UCCUUAGAACACCAAAGAUUGUCUCUGGCAA	chr11:18420902-18421120(+)$1	218	160	191	12.9453
GCACCUCCCAGCCCUCUGCAGCUGCCCGGGG	chr14:23344288-23344541(+)$1	253	57	88	14.4615
GUUCCACGGGCGCUGCUUCCUGCCUGGGUUU	chr3:158519803-158520064(+)$1	261	65	96	14.9350
CCUGUAUAUCCCCUCCAACCGGGUCAACGAU	chr19:11548683-11548893(+)$1	210	68	99	17.8085
AAAUGUGCCCAACAUCAUCAUUGCGGUGAGU	chr7:73663974-73664178(-)$1	204	85	116	16.5236
CAACACCAUCCAGUCCAUCAUGGCCAUUGUC	chr3:50289843-50290063(+)$1	220	48	79	17.4550
UGACAUUUCCCUGCAGGUGAGGGGAACUUGG	chr19:58899468-58899682(+)$1	214	128	159	15.2763
ACAGUCUGUGUUGCAAAAGAAGCCCAAGGCU	chr7:11101510-11101813(+)$1	303	109	140	15.5672
GGGACAUAGGCCGUGAAAAAGAAUUAUGUUC	chr9:128099699-128099920(+)$1	221	175	206	15.3843
CCUGGGUCAUGACCUGUGCAUAUGCCCCUUC	chr1:1735911-1736116(-)$1	205	121	152	12.1029
ACGAUGUGGGUUAUGCUUCAGACUCUCAACG	chr3:141622443-141622657(+)$1	214	77	108	13.6051
CACACGGUUGGUUUCACGCCACCAACUUCAC	chr10:61554195-61554433(-)$1	238	95	126	16.6825
AGCUUGCCUCUCGAAAUGUGGAGAGCUACAC	chr3:128356630-128356893(-)$1	263	145	176	12.9030
AAAGCAGAGUCUUUUUAACUGGCUCUGGUAU	chr2:201784959-201785217(-)$1	258	114	145	11.4524
CUGUGGUUCCUGCAUGAAGACAGUGGCUGGC	chr2:217364613-217364818(+)$1	205	93	124	16.0194
ACAUCGUUGUUGCCUACCCUCAACAGAACUU	chr3:45153716-45153964(-)$1	248	77	108	14.4009
CCAAGCAGCAGUUUUCCACUCUUGCUGUACG	chr11:32956555-32956777(+)$1	222	117	148	11.8487
CCAAGAGGCUGGGCUGGGGACCAGAUUGCUC	chr10:103917838-103918071(+)$1	233	148	179	15.7165
CCGGGAAAUUCUAGUUAAUCAGACUGCCCAU	chr4:119659365-119659586(-)$1	221	89	120	18.2232
GGGAGUACUACCUCACACAUGGCCUCUACUU	chr20:33148571-33148814(-)$1	243	71	102	14.3297
UACGGGGACCACAAGCCCAAGUCUUCCACUG	chr1:17736414-17736648(-)$1	234	104	135	15.8009
CCUCUGAUUGGCAACAUGUUAGCUUUGAAGU	chr17:29562873-29563141(+)$1	268	123	154	11.8902
CGGGAGGCGAGGAAUGGGUGCUGGACGCCAA	chr19:17212563-17212813(+)$1	250	175	206	14.7946
UCAGCUACUCCUGUUGAUGAGGGCGUAGCAG	chr5:71493712-71493929(+)$1	217	57	88	15.1924
CAGCAAGUGACAUAGUCACGGUUGUGGCUCU	chr7:2416484-2416690(+)$1	206	28	59	11.4730
AUGCGAAAGUGCUAACAUUGUGUACUUUGCA	chr2:27438241-27438496(+)$1	255	68	99	12.0697
AUGCAGGGGGUGCACACUCAGCCUCCUCCCU	chr19:18423330-18423535(-)$1	205	152	183	12.0979
CGGCGGAAGAUGAACCACCACAAGUACCGGA	chr1:1309307-1309531(-)$1	224	56	87	15.7798
GUUCGAGAGGCAACGAACGAUGAUCCUUGGG	chr5:157244363-157244633(-)$1	270	118	149	14.7413
CUGGGAUGACCUCUUCAACAAGGUCAAAGAA	chr14:102467812-102468021(+)$1	209	130	161	15.2621
CGUCCUUUGACUGAUGAUGAAGUAGCAGGGA	chr7:91752461-91752684(-)$1	223	62	93	17.7876
CGUCCUUUGACUGAUGAUGAAGUAGCAGGGA	chr7:91752447-91752661(-)$1	214	39	70	17.7876
auauauuuuaaaCCUUUCCAUUUAAAAAUUA	chr4:151793745-151794008(-)$1	263	32	63	15.5904
AAAUGUAAUUGUUAACCAUAAAUUGCAGGCA	chr4:122605731-122605998(-)$1	267	44	75	11.0531
UGCGAAAGUGCUAACAUUGUGUACUUUGCAG	chr2:27438132-27438343(+)$1	211	178	209	11.2412
CACCCAGGAGCUGAUUCCUGAGCGCUGAUGA	chr19:14071274-14071492(+)$1	218	169	200	13.4503
UGCCCUAGGGGGCAACUCCUCCCCCAGCGCC	chr11:810232-810435(+)$1	203	31	62	14.0595
cagguuuguggugagagcuaaCCUCAACUUA	chr11:32610460-32610682(+)$1	222	16	47	13.2498
GUGGGGGGUCAGUCUGUACCCUGCCUCCAGA	chr1:12065881-12066088(+)$1	207	137	168	14.7349
UGCUUCUGUGGAUUCUCACUUCUGUCAUCUA	chr1:45981227-45981432(-)$1	205	71	102	14.6705
GAAGUUCAGGUGUGUAUCCCUACUUGUUCUC	chr17:8285426-8285629(-)$1	203	160	191	15.0992
ACAGUCCAUGUGUAUUCCUCCCACAGGAAAU	chr9:131298649-131298856(+)$1	207	156	187	10.8168

#DB
.(((((((..((........)))))))))..	chr17:42945554-42945755(-)$1	1	81	112	15.1841
((((.((..(((.........)))..)))))	chr11:32616396-32616613(+)$1	1	156	187	11.0485
((((((((.(((......)))))))))))))	chrX:153062811-153063044(+)$1	1	63	94	10.3836
(.((((.(((((........)))))))))))	chr10:81113485-81113743(+)$1	1	24	55	13.1470
..(((..(((((.........))))))))..	chr1:37980170-37980413(-)$1	1	180	211	11.8472
.(((.(((..(((......)))...))))))	chr2:172840995-172841282(+)$1	1	29	60	10.5078
((((((...((..........))...)))..	chr11:18418371-18418579(+)$1	1	50	81	11.9234
(((.((((((((........))..))))..)	chr11:67352126-67352335(+)$1	1	35	66	13.6041
((((((((((((........))).)))...)	chr1:10356541-10356816(+)$1	1	194	225	17.6481
..(((....(((........))).)))....	chr22:29754773-29755061(-)$1	1	199	230	18.2650
..(((..(((((........))).))..)))	chr6:32943183-32943399(+)$1	1	45	76	15.8463
.((..(((.((........)))))..)).))	chr11:18420902-18421120(+)$1	1	160	191	12.9453
(..(((((((((........))))...))))	chr14:23344288-23344541(+)$1	1	57	88	14.4615
.(((((((((((........))))))....)	chr3:158519803-158520064(+)$1	1	65	96	14.9350
(.(((....(((........)))...)))..	chr19:11548683-11548893(+)$1	1	68	99	17.8085
..((..((((((........))).)))..))	chr7:73663974-73664178(-)$1	1	85	116	16.5236
(.(((....(((........)))....))).	chr3:50289843-50290063(+)$1	1	48	79	17.4550
(.((..((((((........))))))....)	chr19:58899468-58899682(+)$1	1	128	159	15.2763
.((((((..(((........)))...)))))	chr7:11101510-11101813(+)$1	1	109	140	15.5672
(((((((((..(........)..))))))))	chr9:128099699-128099920(+)$1	1	175	206	15.3843
...(((.((((.........)))).)))...	chr1:1735911-1736116(-)$1	1	121	152	12.1029
(((.((.(((((........))))).)).))	chr3:141622443-141622657(+)$1	1	77	108	13.6051
((...(((((((........)))))))....	chr10:61554195-61554433(-)$1	1	95	126	16.6825
((((((.(((((........)))))......	chr3:128356630-128356893(-)$1	1	145	176	12.9030
....(((((((.........)))))))))))	chr2:201784959-201785217(-)$1	1	114	145	11.4524
((((.(((.(((........))).)))..))	chr2:217364613-217364818(+)$1	1	93	124	16.0194
(((((.((((((........)))))......	chr3:45153716-45153964(-)$1	1	77	108	14.4009
.(..(((((((..........)))))))..)	chr11:32956555-32956777(+)$1	1	117	148	11.8487
(((.(((.((((........))))....)))	chr10:103917838-103918071(+)$1	1	148	179	15.7165
..(((....(((........)))...)))..	chr4:119659365-119659586(-)$1	1	89	120	18.2232
(((((((...((........))....)))))	chr20:33148571-33148814(-)$1	1	71	102	14.3297
(.((((((..((........))..))).)))	chr1:17736414-17736648(-)$1	1	104	135	15.8009
((.((....(((.........)))....)).	chr17:29562873-29563141(+)$1	1	123	154	11.8902
((...((((.((........))...))))..	chr19:17212563-17212813(+)$1	1	175	206	14.7946
((.(((((.(((........))).))))).)	chr5:71493712-71493929(+)$1	1	57	88	15.1924
(((..(((.(((..........))).)))..	chr7:2416484-2416690(+)$1	1	28	59	11.4730
.(((.(((((((.........))))))))))	chr2:27438241-27438496(+)$1	1	68	99	12.0697
(.(.(((((((.........))))))).).)	chr19:18423330-18423535(-)$1	1	152	183	12.0979
((((((.(..((........))..).))...	chr1:1309307-1309531(-)$1	1	56	87	15.7798
((((..((((((........))..))))..)	chr5:157244363-157244633(-)$1	1	118	149	14.7413
((((((((((((........)))))).....	chr14:102467812-102468021(+)$1	1	130	161	15.2621
(((((((..(((........)))...)))))	chr7:91752461-91752684(-)$1	1	62	93	17.7876
(((((((..(((........)))...)))))	chr7:91752447-91752661(-)$1	1	39	70	17.7876
(((..(((((((........)))))))..))	chr4:151793745-151794008(-)$1	1	32	63	15.5904
...(((((((..........))))))))))(	chr4:122605731-122605998(-)$1	1	44	75	11.0531
(((.(((((((.........)))))))))).	chr2:27438132-27438343(+)$1	1	178	209	11.2412
((((((((.(((........))).)).....	chr19:14071274-14071492(+)$1	1	169	200	13.4503
.((....(((((........))))).)))))	chr11:810232-810435(+)$1	1	31	62	14.0595
)))))(((.(((........))).)))....	chr11:32610460-32610682(+)$1	1	16	47	13.2498
)))(((((.(((........)))))))).((	chr1:12065881-12066088(+)$1	1	137	168	14.7349
((((..((((((........)))).))...)	chr1:45981227-45981432(-)$1	1	71	102	14.6705
((.(..((((((........))))))..)))	chr17:8285426-8285629(-)$1	1	160	191	15.0992
(((.(((.((((.........)))))))..)	chr9:131298649-131298856(+)$1	1	156	187	10.8168

#PSSM
e : 0.11	f : 0.11	[ : 0.09	d : 0.09	g : 0.09	! : 0.09	= : 0.05	# : 0.05	b : 0.05	i : 0.05	c : 0.05	" : 0.03	h : 0.03	a : 0.01	+ : 0.01	
f : 0.13	g : 0.11	e : 0.11	[ : 0.11	b : 0.09	! : 0.07	= : 0.05	# : 0.05	c : 0.05	i : 0.05	" : 0.03	h : 0.03	d : 0.03	a : 0.01	
c : 0.18	g : 0.11	f : 0.11	b : 0.11	e : 0.09	i : 0.05	" : 0.05	[ : 0.05	= : 0.03	d : 0.03	! : 0.03	# : 0.03	h : 0.03	a : 0.01	
c : 0.20	e : 0.15	[ : 0.11	g : 0.09	! : 0.07	b : 0.05	f : 0.05	i : 0.05	= : 0.03	" : 0.03	# : 0.03	h : 0.03	d : 0.01	a : 0.01	
c : 0.20	! : 0.15	g : 0.13	e : 0.11	[ : 0.07	b : 0.07	f : 0.05	i : 0.05	= : 0.03	" : 0.03	d : 0.01	h : 0.01	# : 0.01	
g : 0.18	c : 0.18	! : 0.13	# : 0.11	e : 0.09	b : 0.07	i : 0.05	= : 0.03	d : 0.03	f : 0.03	[ : 0.01	h : 0.01	
c : 0.18	g : 0.16	# : 0.11	[ : 0.09	f : 0.09	e : 0.07	b : 0.05	d : 0.05	i : 0.05	! : 0.03	= : 0.01	" : 0.01	a : 0.01	
g : 0.16	e : 0.16	c : 0.15	# : 0.09	! : 0.07	d : 0.07	f : 0.07	b : 0.05	" : 0.03	[ : 0.03	= : 0.01	i : 0.01	a : 0.01	
! : 0.15	[ : 0.15	d : 0.15	g : 0.15	e : 0.11	# : 0.09	f : 0.07	" : 0.03	c : 0.03	b : 0.01	i : 0.01	
c : 0.35	g : 0.15	d : 0.13	e : 0.11	! : 0.09	f : 0.07	b : 0.03	" : 0.01	[ : 0.01	
c : 0.37	b : 0.16	g : 0.13	e : 0.11	d : 0.09	f : 0.07	! : 0.01	s : 0.01	
c : 0.37	b : 0.13	e : 0.11	d : 0.07	f : 0.07	r : 0.07	s : 0.05	g : 0.05	q : 0.01	a : 0.01	
q : 0.71	r : 0.16	s : 0.07	o : 0.01	c : 0.01	
q : 0.71	r : 0.16	s : 0.07	o : 0.03	
q : 0.71	r : 0.16	s : 0.07	o : 0.03	
q : 0.71	r : 0.16	s : 0.07	o : 0.03	
q : 0.71	r : 0.16	s : 0.07	o : 0.03	
q : 0.71	r : 0.16	s : 0.07	o : 0.03	
q : 0.71	r : 0.16	s : 0.07	c : 0.01	o : 0.01	
q : 0.69	r : 0.16	s : 0.07	c : 0.03	b : 0.01	
c : 0.32	b : 0.15	g : 0.11	r : 0.09	e : 0.09	d : 0.07	f : 0.07	s : 0.05	a : 0.01	
c : 0.35	b : 0.15	g : 0.15	e : 0.11	d : 0.09	f : 0.07	= : 0.01	2 : 0.01	s : 0.01	
c : 0.35	g : 0.16	e : 0.11	2 : 0.09	d : 0.09	f : 0.07	3 : 0.03	= : 0.01	b : 0.01	4 : 0.01	
g : 0.16	3 : 0.15	] : 0.15	e : 0.13	d : 0.09	c : 0.07	2 : 0.07	f : 0.07	4 : 0.03	= : 0.01	i : 0.01	
g : 0.16	3 : 0.16	e : 0.15	c : 0.13	f : 0.07	4 : 0.07	d : 0.05	2 : 0.03	b : 0.03	] : 0.03	= : 0.01	i : 0.01	a : 0.01	
g : 0.16	c : 0.16	3 : 0.13	d : 0.07	f : 0.07	4 : 0.07	] : 0.07	e : 0.05	b : 0.05	2 : 0.03	= : 0.01	i : 0.01	6 : 0.01	> : 0.01	
c : 0.26	g : 0.16	b : 0.11	4 : 0.09	d : 0.07	i : 0.05	e : 0.05	2 : 0.03	> : 0.03	= : 0.01	3 : 0.01	f : 0.01	6 : 0.01	7 : 0.01	
c : 0.20	4 : 0.11	b : 0.09	2 : 0.09	d : 0.07	e : 0.07	g : 0.05	i : 0.05	3 : 0.03	f : 0.03	> : 0.03	] : 0.03	= : 0.01	6 : 0.01	7 : 0.01	: : 0.01	
c : 0.24	2 : 0.13	4 : 0.11	e : 0.07	d : 0.05	i : 0.05	3 : 0.03	] : 0.03	f : 0.03	> : 0.03	a : 0.03	: : 0.03	g : 0.01	= : 0.01	6 : 0.01	b : 0.01	7 : 0.01	
c : 0.16	2 : 0.15	4 : 0.13	e : 0.05	3 : 0.05	b : 0.05	f : 0.05	i : 0.05	= : 0.03	d : 0.03	h : 0.03	> : 0.03	] : 0.03	9 : 0.01	6 : 0.01	7 : 0.01	: : 0.01	
e : 0.11	4 : 0.11	c : 0.11	b : 0.11	2 : 0.07	d : 0.05	f : 0.05	i : 0.05	= : 0.03	g : 0.03	h : 0.03	> : 0.03	: : 0.03	9 : 0.01	3 : 0.01	6 : 0.01	a : 0.01	] : 0.01	7 : 0.01	

#score	755.6913889629038
#seq	53
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_transcript_m2_run2.txt

#BEAR
ddddoooooodddd	chr1:226033017-226033316(+)$1	299	89	103	11.8979
ddddoooooodddd	chrX:152913467-152913745(+)$1	278	176	190	11.8979
ddddoooooodddd	chr11:2160032-2160247(-)$1	215	91	105	11.8979
eeeeooooooeeee	chr6:41757283-41757593(+)$1	310	107	121	10.9135
ddddoooooodddd	chr17:1648567-1648789(+)$1	222	128	142	11.8979
#cccooooooccc5	chr20:34213979-34214277(-)$1	298	274	288	9.8500
ddddoooooodddd	chr11:2154676-2154886(-)$1	210	37	51	11.8979
[cccoooooocccc	chr8:42878488-42878783(+)$1	295	13	27	10.6834
eeeeooooooeeee	chr1:31907212-31907477(+)$1	265	117	131	10.9135
eeeeooooooeeee	chr12:6679625-6679911(-)$1	286	104	118	10.9135
ddddoooooodddd	chr6:34213219-34213473(+)$1	254	64	78	11.8979
[cccoooooocccd	chr15:72491308-72491562(-)$1	254	166	180	10.9493
"cccooooooccc]	chr19:13054834-13055084(+)$1	250	136	150	10.6838
eeeeooooooeeee	chr11:57244320-57244664(+)$1	344	107	121	10.9135
[cccooooooccc5	chrX:53221567-53221862(-)$1	295	206	220	9.9954
eeeeooooooeeee	chr11:2154686-2154894(-)$1	208	175	189	10.9135
ddddoooooodddd	chr7:73011659-73011938(-)$1	279	88	102	11.8979
eeeeooooooeeee	chr9:124062097-124062360(+)$1	263	66	80	10.9135
!cccooooooccc2	chr10:73576253-73576520(-)$1	267	190	204	10.5473
ddddoooooodddd	chr16:29817954-29818179(+)$1	225	77	91	11.8979
ddddoooooodddd	chr19:1088225-1088495(-)$1	270	60	74	11.8979
ddddoooooodddd	chr19:47113423-47113713(+)$1	290	74	88	11.8979
eeeeooooooeeee	chr19:18392215-18392450(-)$1	235	174	188	10.9135
eeeeooooooeeee	chr6:35437042-35437318(+)$1	276	260	274	10.9135
[cccooooooccc]	chr17:30263993-30264266(+)$1	273	199	213	10.8032
[cccooooooccc]	chr20:30754003-30754293(+)$1	290	80	94	10.8032
eeeeooooooeeee	chr19:1088438-1088738(-)$1	300	279	293	10.9135
ddddoooooodddd	chr6:43128633-43128907(+)$1	274	232	246	11.8979
[cccooooooccc]	chr10:74127675-74127973(-)$1	298	217	231	10.8032
ddddoooooodddd	chr12:54058893-54059204(-)$1	311	59	73	11.8979
ddddoooooodddd	chr10:73576920-73577184(-)$1	264	225	239	11.8979
fcccooooooccc]	chr15:69747492-69747717(+)$1	225	37	51	10.5455
acccooooooccc]	chr17:4848944-4849227(-)$1	283	173	187	10.6548
[cccooooooccce	chrX:47074213-47074561(+)$1	348	38	52	10.8794
eeeeooooooeeee	chr11:2151111-2151332(-)$1	221	189	203	10.9135
ddddoooooodddd	chrX:152961351-152961617(+)$1	266	49	63	11.8979
ccccooooooccc:	chr21:46282907-46283162(-)$1	255	102	116	9.7329
eeeeooooooeeee	chr19:48894504-48894799(-)$1	295	187	201	10.9135
ddddoooooodddd	chr11:2160099-2160302(-)$1	203	146	160	11.8979
eeeeooooooeeee	chr10:102122259-102122471(+)$1	212	179	193	10.9135
(cccooooooccce	chr11:61067368-61067615(-)$1	247	220	234	10.0419
ddddoooooodddd	chr1:27107317-27107586(+)$1	269	191	205	11.8979
eeeeooooooeeee	chr12:125270814-125271068(-)$1	254	6	20	10.9135
!cccooooooccc]	chr14:95053738-95053995(+)$1	257	216	230	10.8184
ddddoooooodddd	chr19:45411832-45412069(+)$1	237	143	157	11.8979
ddddoooooodddd	chr17:80273984-80274252(-)$1	268	2	16	11.8979
ddddoooooodddd	chr2:61625402-61625693(-)$1	291	243	257	11.8979
ddddoooooodddd	chr22:21141540-21141803(+)$1	263	59	73	11.8979
[cccooooooccc]	chr3:48461198-48461433(-)$1	235	116	130	10.8032
ddddoooooodddd	chr3:47894065-47894355(-)$1	290	228	242	11.8979
ddddoooooodddd	chr20:33298157-33298424(+)$1	267	0	14	11.8979
ddddoooooodddd	chr10:104417308-104417573(+)$1	265	123	137	11.8979
eeeeooooooeeee	chr12:58141967-58142272(-)$1	305	156	170	10.9135
ddddoooooodddd	chr1:20812073-20812307(-)$1	234	115	129	11.8979
dcccooooooccc:	chr19:932457-932787(+)$1	330	83	97	9.9788
[cccooooooccc]	chr10:73576374-73576673(-)$1	299	161	175	10.8032
ddddoooooodddd	chr14:24774458-24774733(-)$1	275	105	119	11.8979
eeeaooooooa]ee	chr1:55317101-55317385(-)$1	284	2	16	10.3095
eeeeooooooeeee	chr20:307971-308211(+)$1	240	224	238	10.9135
ddddoooooodddd	chr6:44221257-44221523(+)$1	266	207	221	11.8979
eeeeooooooeeee	chr7:75615723-75616005(+)$1	282	25	39	10.9135
"cccooooooccc5	chr17:41610466-41610725(-)$1	259	102	116	9.8759
ddddoooooodddd	chr1:8921196-8921520(-)$1	324	307	321	11.8979
ddddoooooodddd	chr2:171822199-171822524(+)$1	325	48	62	11.8979

#otherMatches

#Seq PSSM
GGGGAAGAUACCCC	chr1:226033017-226033316(+)$1	299	89	103	11.8979
CCUGUACGACCAgg	chrX:152913467-152913745(+)$1	278	176	190	11.8979
UCGGCCCAAACCGA	chr11:2160032-2160247(-)$1	215	91	105	11.8979
UGAAGUUUGAUUCA	chr6:41757283-41757593(+)$1	310	107	121	10.9135
CCAGGUGGGGCUGG	chr17:1648567-1648789(+)$1	222	128	142	11.8979
CUGACAACCCUCAU	chr20:34213979-34214277(-)$1	298	274	288	9.8500
GGAGUGCUGUUUCC	chr11:2154676-2154886(-)$1	210	37	51	11.8979
GAGCCACUUUGCUA	chr8:42878488-42878783(+)$1	295	13	27	10.6834
GGGCUCCCUUGUCC	chr1:31907212-31907477(+)$1	265	117	131	10.9135
GUGACCUUCCUCAC	chr12:6679625-6679911(-)$1	286	104	118	10.9135
AGCCCCCUUCGGUU	chr6:34213219-34213473(+)$1	254	64	78	11.8979
AUGUCAAUAAACAA	chr15:72491308-72491562(-)$1	254	166	180	10.9493
CAUCUUUCUUGAUC	chr19:13054834-13055084(+)$1	250	136	150	10.6838
CCCGUCCACCCGGG	chr11:57244320-57244664(+)$1	344	107	121	10.9135
UCACAUAGCCGUGC	chrX:53221567-53221862(-)$1	295	206	220	9.9954
CUCUAGAGACAGAG	chr11:2154686-2154894(-)$1	208	175	189	10.9135
CUGCUUUGCUGCAG	chr7:73011659-73011938(-)$1	279	88	102	11.8979
GCGCUGCUUUGCGC	chr9:124062097-124062360(+)$1	263	66	80	10.9135
CUUUUCAAAUAAAU	chr10:73576253-73576520(-)$1	267	190	204	10.5473
GUGUUUCCUUGCAC	chr16:29817954-29818179(+)$1	225	77	91	11.8979
CCCCUCUGUUGGGG	chr19:1088225-1088495(-)$1	270	60	74	11.8979
CCGCUUCUCCGUGG	chr19:47113423-47113713(+)$1	290	74	88	11.8979
GGCGAUGAGGCGCU	chr19:18392215-18392450(-)$1	235	174	188	10.9135
CUGGGUGAGUCCGG	chr6:35437042-35437318(+)$1	276	260	274	10.9135
GUUGGUAUUGCAGG	chr17:30263993-30264266(+)$1	273	199	213	10.8032
AGCAUCCACUUGUC	chr20:30754003-30754293(+)$1	290	80	94	10.8032
GUCUUCACCCAGAC	chr19:1088438-1088738(-)$1	300	279	293	10.9135
UCCUCUAUCAGGGA	chr6:43128633-43128907(+)$1	274	232	246	11.8979
UAUCCCCAUAGGUU	chr10:74127675-74127973(-)$1	298	217	231	10.8032
GGGCUCUUUUGUCU	chr12:54058893-54059204(-)$1	311	59	73	11.8979
AGGUCUUUUAGCCU	chr10:73576920-73577184(-)$1	264	225	239	11.8979
GGGAGCCUCAUCUG	chr15:69747492-69747717(+)$1	225	37	51	10.5455
GCUGGAUGGACAGA	chr17:4848944-4849227(-)$1	283	173	187	10.6548
UGGUGCUUGAGCUG	chrX:47074213-47074561(+)$1	348	38	52	10.8794
GGGCCCCGGAGCCC	chr11:2151111-2151332(-)$1	221	189	203	10.9135
AGAAUGAGAUUUCU	chrX:152961351-152961617(+)$1	266	49	63	11.8979
GGCCGUGGUGGGCU	chr21:46282907-46283162(-)$1	255	102	116	9.7329
AAUCUCUUCCGAUU	chr19:48894504-48894799(-)$1	295	187	201	10.9135
UCGGCCCAAACCGA	chr11:2160099-2160302(-)$1	203	146	160	11.8979
CCACUUUCACGUGG	chr10:102122259-102122471(+)$1	212	179	193	10.9135
AGUCUCACAUGAUU	chr11:61067368-61067615(-)$1	247	220	234	10.0419
UCUGCCUACAUAGA	chr1:27107317-27107586(+)$1	269	191	205	11.8979
UCUGUCUCCUCAGA	chr12:125270814-125271068(-)$1	254	6	20	10.9135
AGCACAAAGAUGCA	chr14:95053738-95053995(+)$1	257	216	230	10.8184
GGCCAUGCUCGGCC	chr19:45411832-45412069(+)$1	237	143	157	11.8979
GCCCCACCAAGGGC	chr17:80273984-80274252(-)$1	268	2	16	11.8979
ggcucauugcagcc	chr2:61625402-61625693(-)$1	291	243	257	11.8979
GAGGGUCUCACCUC	chr22:21141540-21141803(+)$1	263	59	73	11.8979
CACCGUCAGAGGUA	chr3:48461198-48461433(-)$1	235	116	130	10.8032
CCACUGCUCCGUGG	chr3:47894065-47894355(-)$1	290	228	242	11.8979
UCGGGCUCCUCCGA	chr20:33298157-33298424(+)$1	267	0	14	11.8979
UCACACCCCCGUGG	chr10:104417308-104417573(+)$1	265	123	137	11.8979
CUCUACACUAAGGG	chr12:58141967-58142272(-)$1	305	156	170	10.9135
ggccccgcccggcc	chr1:20812073-20812307(-)$1	234	115	129	11.8979
UGCCAGCUUGGGCA	chr19:932457-932787(+)$1	330	83	97	9.9788
AAGAGGGCCAUCUG	chr10:73576374-73576673(-)$1	299	161	175	10.8032
GCCACCUUUCUGGC	chr14:24774458-24774733(-)$1	275	105	119	11.8979
CCUCACAGGAGAAG	chr1:55317101-55317385(-)$1	284	2	16	10.3095
GGGCGUCGCUGCCU	chr20:307971-308211(+)$1	240	224	238	10.9135
CCUUGUGUUGAAGG	chr6:44221257-44221523(+)$1	266	207	221	11.8979
AUCAAGAAACUGAU	chr7:75615723-75616005(+)$1	282	25	39	10.9135
ACGGAAUUUCCUGA	chr17:41610466-41610725(-)$1	259	102	116	9.8759
GUCGUGUAAUUGGC	chr1:8921196-8921520(-)$1	324	307	321	11.8979
GCUGUCCUUUCAGU	chr2:171822199-171822524(+)$1	325	48	62	11.8979

#DB
((((......))))	chr1:226033017-226033316(+)$1	1	89	103	11.8979
((((......))))	chrX:152913467-152913745(+)$1	1	176	190	11.8979
((((......))))	chr11:2160032-2160247(-)$1	1	91	105	11.8979
((((......))))	chr6:41757283-41757593(+)$1	1	107	121	10.9135
((((......))))	chr17:1648567-1648789(+)$1	1	128	142	11.8979
.(((......))).	chr20:34213979-34214277(-)$1	1	274	288	9.8500
((((......))))	chr11:2154676-2154886(-)$1	1	37	51	11.8979
.(((......))))	chr8:42878488-42878783(+)$1	1	13	27	10.6834
((((......))))	chr1:31907212-31907477(+)$1	1	117	131	10.9135
((((......))))	chr12:6679625-6679911(-)$1	1	104	118	10.9135
((((......))))	chr6:34213219-34213473(+)$1	1	64	78	11.8979
.(((......))))	chr15:72491308-72491562(-)$1	1	166	180	10.9493
.(((......))).	chr19:13054834-13055084(+)$1	1	136	150	10.6838
((((......))))	chr11:57244320-57244664(+)$1	1	107	121	10.9135
.(((......))).	chrX:53221567-53221862(-)$1	1	206	220	9.9954
((((......))))	chr11:2154686-2154894(-)$1	1	175	189	10.9135
((((......))))	chr7:73011659-73011938(-)$1	1	88	102	11.8979
((((......))))	chr9:124062097-124062360(+)$1	1	66	80	10.9135
.(((......))).	chr10:73576253-73576520(-)$1	1	190	204	10.5473
((((......))))	chr16:29817954-29818179(+)$1	1	77	91	11.8979
((((......))))	chr19:1088225-1088495(-)$1	1	60	74	11.8979
((((......))))	chr19:47113423-47113713(+)$1	1	74	88	11.8979
((((......))))	chr19:18392215-18392450(-)$1	1	174	188	10.9135
((((......))))	chr6:35437042-35437318(+)$1	1	260	274	10.9135
.(((......))).	chr17:30263993-30264266(+)$1	1	199	213	10.8032
.(((......))).	chr20:30754003-30754293(+)$1	1	80	94	10.8032
((((......))))	chr19:1088438-1088738(-)$1	1	279	293	10.9135
((((......))))	chr6:43128633-43128907(+)$1	1	232	246	11.8979
.(((......))).	chr10:74127675-74127973(-)$1	1	217	231	10.8032
((((......))))	chr12:54058893-54059204(-)$1	1	59	73	11.8979
((((......))))	chr10:73576920-73577184(-)$1	1	225	239	11.8979
((((......))).	chr15:69747492-69747717(+)$1	1	37	51	10.5455
((((......))).	chr17:4848944-4849227(-)$1	1	173	187	10.6548
.(((......))))	chrX:47074213-47074561(+)$1	1	38	52	10.8794
((((......))))	chr11:2151111-2151332(-)$1	1	189	203	10.9135
((((......))))	chrX:152961351-152961617(+)$1	1	49	63	11.8979
)(((......))).	chr21:46282907-46283162(-)$1	1	102	116	9.7329
((((......))))	chr19:48894504-48894799(-)$1	1	187	201	10.9135
((((......))))	chr11:2160099-2160302(-)$1	1	146	160	11.8979
((((......))))	chr10:102122259-102122471(+)$1	1	179	193	10.9135
.(((......))))	chr11:61067368-61067615(-)$1	1	220	234	10.0419
((((......))))	chr1:27107317-27107586(+)$1	1	191	205	11.8979
((((......))))	chr12:125270814-125271068(-)$1	1	6	20	10.9135
.(((......))).	chr14:95053738-95053995(+)$1	1	216	230	10.8184
((((......))))	chr19:45411832-45412069(+)$1	1	143	157	11.8979
((((......))))	chr17:80273984-80274252(-)$1	1	2	16	11.8979
((((......))))	chr2:61625402-61625693(-)$1	1	243	257	11.8979
((((......))))	chr22:21141540-21141803(+)$1	1	59	73	11.8979
.(((......))).	chr3:48461198-48461433(-)$1	1	116	130	10.8032
((((......))))	chr3:47894065-47894355(-)$1	1	228	242	11.8979
((((......))))	chr20:33298157-33298424(+)$1	1	0	14	11.8979
((((......))))	chr10:104417308-104417573(+)$1	1	123	137	11.8979
((((......))))	chr12:58141967-58142272(-)$1	1	156	170	10.9135
((((......))))	chr1:20812073-20812307(-)$1	1	115	129	11.8979
)(((......))).	chr19:932457-932787(+)$1	1	83	97	9.9788
.(((......))).	chr10:73576374-73576673(-)$1	1	161	175	10.8032
((((......))))	chr14:24774458-24774733(-)$1	1	105	119	11.8979
((((......).))	chr1:55317101-55317385(-)$1	1	2	16	10.3095
((((......))))	chr20:307971-308211(+)$1	1	224	238	10.9135
((((......))))	chr6:44221257-44221523(+)$1	1	207	221	11.8979
((((......))))	chr7:75615723-75616005(+)$1	1	25	39	10.9135
.(((......))).	chr17:41610466-41610725(-)$1	1	102	116	9.8759
((((......))))	chr1:8921196-8921520(-)$1	1	307	321	11.8979
((((......))))	chr2:171822199-171822524(+)$1	1	48	62	11.8979

#PSSM
d : 0.45	e : 0.26	[ : 0.14	" : 0.03	! : 0.03	# : 0.01	f : 0.01	a : 0.01	c : 0.01	( : 0.01	
d : 0.43	c : 0.29	e : 0.26	
d : 0.43	c : 0.29	e : 0.26	
d : 0.43	c : 0.29	e : 0.25	a : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.43	c : 0.29	e : 0.25	a : 0.01	
d : 0.43	c : 0.29	e : 0.25	] : 0.01	
d : 0.43	c : 0.29	e : 0.26	
d : 0.45	e : 0.29	] : 0.14	5 : 0.04	: : 0.03	c : 0.01	2 : 0.01	

#score	717.3235137172909
#seq	64
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_CDS_m2_run2.txt

#BEAR
hhheeeeeuuuuuuuuuuuueeeee::	chr19:45562374-45562660(+)$1	286	54	81	22.3519
gggggyyyyyyyyyyyyyyyygggggg	chr9:130867829-130868109(+)$1	280	180	207	22.7951
eee!!cccuuuuuuuuuuuuccc]eee	chr2:97492419-97492696(+)$1	277	167	194	24.1232
hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr20:1143621-1143878(+)$1	257	158	185	21.4949
i[eeeeewwwwwwwwwwwwwweeeeei	chr17:48445548-48445875(-)$1	327	288	315	23.4380
cc[cccwwwwwwwwwwwwwwcccccc2	chr5:52223267-52223523(+)$1	256	20	47	22.6353
=====yyyyyyyyyyyyyyyy======	chr17:80202590-80202870(-)$1	280	65	92	22.7836
ccc[dddduuuuuuuuuuuuddddccc	chr16:28884326-28884610(+)$1	284	252	279	23.5945
ccceeeeeuuuuuuuuuuuueeeee22	chr17:79575743-79576036(-)$1	293	238	265	24.6427
!!eeeeexxxxxxxxxxxxxxxeeeee	chr6:52372999-52373252(-)$1	253	82	109	19.7253
e!!eeeeettttttttttteeeee333	chr14:103410721-103410988(-)$1	267	158	185	23.6807
gggggggxxxxxxxxxxxxxxxggggg	chr17:38344937-38345227(+)$1	290	6	33	19.5006
eeffffffuuuuuuuuuuuuffffffC	chr17:79634603-79634862(+)$1	259	215	242	22.0069
dccc[bbvvvvvvvvvvvvvbb]ccc]	chr2:85576592-85576871(-)$1	279	182	209	22.3926
gggg[bbvvvvvvvvvvvvvbbggggg	chr2:21252547-21252811(-)$1	264	20	47	22.7933
cc!!dddduuuuuuuuuuuudddd333	chr16:84214952-84215227(-)$1	275	97	124	24.2924
D::eeeeeuuuuuuuuuuuueeeee::	chr3:48683188-48683456(-)$1	268	110	137	19.8846
iiiiiiiiitttttttttttiiiiiii	chr20:10633115-10633396(-)$1	281	123	150	22.2318
"ggggggguuuuuuuuuuuuggggggg	chr1:226053556-226053828(-)$1	272	28	55	24.4604
[bb[ddddwwwwwwwwwwwwwwdddd2	chr9:128099148-128099397(+)$1	249	160	187	21.2729
::fffffftttttttttttffffffgg	chr6:43592695-43592972(-)$1	277	87	114	19.9363
b[ddddyyyyyyyyyyyyyyyydddd]	chr1:156914883-156915146(-)$1	263	129	156	21.7781
dddd!!bbvvvvvvvvvvvvvbb22dd	chr19:5927985-5928266(-)$1	281	142	169	21.0708
eee!!ddddtttttttttttdddd22e	chr15:72648848-72649103(-)$1	255	151	178	21.5631
ff[fffffftttttttttttffffff]	chr6:32942088-32942376(+)$1	288	88	115	21.7312
hhhhhhhhwwwwwwwwwwwwwwhhhhh	chr2:70451630-70451919(-)$1	289	73	100	20.1051
!!gggggggtttttttttttggggggg	chr7:99159812-99160086(+)$1	274	164	191	22.7670
:eeeeewwwwwwwwwwwwwweeeeedd	chr17:79684280-79684530(+)$1	250	201	228	21.6823
dggggggguuuuuuuuuuuuggggggg	chr16:86575697-86575938(-)$1	241	203	230	24.3329
iiiiiiiiuuuuuuuuuuuuiiiiiii	chr2:21257667-21257919(-)$1	252	200	227	24.3520
!gggggggtttttttttttggggggg]	chr3:52019198-52019477(+)$1	279	125	152	22.9369
ff:ccc[auuuuuuuuuuuua]ccc::	chr20:44520411-44520667(+)$1	256	13	40	21.0840
ff[ayyyyyyyyyyyyyyyya]fffff	chr16:66764016-66764278(-)$1	262	214	241	21.3868
e!!eeeeeuuuuuuuuuuuueeeee22	chr2:27729197-27729450(+)$1	253	29	56	24.9234
hhhhh[bbtttttttttttbb]hhhhh	chr1:44432084-44432361(+)$1	277	58	85	20.4037
""ddddwwwwwwwwwwwwwwdddd333	chr11:3063363-3063640(-)$1	277	131	158	22.4586
dddeeeeettttttttttteeeee333	chr17:42155932-42156210(-)$1	278	223	250	22.9945
eeee[cccuuuuuuuuuuuuccc22ee	chr11:763578-763851(+)$1	273	184	211	23.7806
gggggddddtttttttttttdddd333	chr6:31597177-31597443(+)$1	266	223	250	22.6070
g[ffffffuuuuuuuuuuuuffffff]	chr3:171395368-171395647(-)$1	279	112	139	23.7744
dd[eeeeevvvvvvvvvvvvveeeee]	chr22:50877973-50878236(+)$1	263	84	111	23.6031
:ggggggguuuuuuuuuuuuggggggg	chr1:228284879-228285154(+)$1	275	179	206	23.5739
HHeeeeewwwwwwwwwwwwwweeeee:	chr16:1812680-1812949(+)$1	269	214	241	21.2031
iiiiiiwwwwwwwwwwwwwwiiiiiii	chr9:134360198-134360454(+)$1	256	213	240	22.7764
###bbyyyyyyyyyyyyyyyybb4444	chr16:8993507-8993770(-)$1	263	121	148	21.1511
c[ccc[bbuuuuuuuuuuuubb]ccc]	chr5:140958641-140958921(-)$1	280	27	54	23.7147
e[eeeeeauuuuuuuuuuuua]eeeee	chr7:1526621-1526905(-)$1	284	189	216	24.7952
!!a!!cccuuuuuuuuuuuuccc22a3	chr21:45744844-45745141(+)$1	297	195	222	24.5316
d!!eeeeeuuuuuuuuuuuueeeee]d	chr5:461935-462177(+)$1	242	174	201	24.7383
c!!eeeeeuuuuuuuuuuuueeeee22	chr20:47629938-47630211(+)$1	273	226	253	25.0020
$$$eeeeettttttttttteeeee333	chr3:49051473-49051766(+)$1	293	69	96	22.8990
ffffffwwwwwwwwwwwwwwffffff]	chr13:113835440-113835712(-)$1	272	214	241	21.8866
e"""ddddtttttttttttddddeeee	chr6:170699946-170700214(+)$1	268	130	157	22.0087
eeeee[ccctttttttttttccc]eee	chr13:115010195-115010490(+)$1	295	87	114	22.5771
f[ffffffwwwwwwwwwwwwwwfffff	chr16:81703569-81703849(+)$1	280	151	178	21.4951
========xxxxxxxxxxxxxxx====	chr3:184052354-184052630(+)$1	276	114	141	18.9511
####ddddtttttttttttdddd22dd	chr9:127620235-127620498(-)$1	263	147	174	21.3263
:ccc[cccuuuuuuuuuuuuccc]ccc	chr16:28124260-28124524(-)$1	264	129	156	23.3346
mcccddddtttttttttttdddd:ccc	chr15:91493158-91493518(+)$1	360	257	284	20.1482
eee[cccvvvvvvvvvvvvvccceeee	chr14:75416151-75416408(-)$1	257	153	180	23.0920
ffeeeeewwwwwwwwwwwwwweeeee]	chr7:4800519-4800808(+)$1	289	194	221	23.2051
::eeeeewwwwwwwwwwwwwweeeee:	chr1:55349344-55349624(-)$1	280	252	279	20.6035
$$ffffffuuuuuuuuuuuuffffff2	chr19:19464999-19465271(+)$1	272	69	96	23.1322
ffffyyyyyyyyyyyyyyyyffffff]	chr17:12908277-12908573(-)$1	296	221	248	21.4374
ggggg!!bbtttttttttttbb]gggg	chr1:19422037-19422296(-)$1	259	3	30	22.2053
DDeeeeevvvvvvvvvvvvveeeeecc	chr4:8217685-8217944(+)$1	259	147	174	21.4656

#otherMatches

#Seq PSSM
GGCGGGCGCCCCAUCAUCCCCGCCUCC	chr19:45562374-45562660(+)$1	286	54	81	22.3519
CCAUGCCUCCCGCAGCAACAACAUGGG	chr9:130867829-130868109(+)$1	280	180	207	22.7951
AGGAAGCCUGCUUCUCUGAUGGCCCCU	chr2:97492419-97492696(+)$1	277	167	194	24.1232
UCCCCUGGGCCCGUUUGUUGUCGGGGG	chr20:1143621-1143878(+)$1	257	158	185	21.4949
GUGCCUCAUCCCAGAAACACGGAGGCU	chr17:48445548-48445875(-)$1	327	288	315	23.4380
CAGCUAAAUCGAGACAAAAAUAGUGGC	chr5:52223267-52223523(+)$1	256	20	47	22.6353
GGUGCGUCCCCUCCCUGCCCAGCACCG	chr17:80202590-80202870(-)$1	280	65	92	22.7836
GAGUGACUGUGUGUAAGUGUGGUCCUC	chr16:28884326-28884610(+)$1	284	252	279	23.5945
GUCCUUCCACGCCUACAUCCGGAAGCU	chr17:79575743-79576036(-)$1	293	238	265	24.6427
CUGCAGGGACACUUUUCUCUAUCCUGC	chr6:52372999-52373252(-)$1	253	82	109	19.7253
CCACAGUGAUCGUCCGUGCCGCUGACU	chr14:103410721-103410988(-)$1	267	158	185	23.6807
GGAUAAUUAUCCCAUACUGCUCAUUGU	chr17:38344937-38345227(+)$1	290	6	33	19.5006
CCGGCUCCGGGAGAUUAUGAGGAGCCG	chr17:79634603-79634862(+)$1	259	215	242	22.0069
ACAGUGCCUUUUCCAUGCACGCCCUGC	chr2:85576592-85576871(-)$1	279	182	209	22.3926
UUACACCUAUUUGAUUCUGCGGGUAAU	chr2:21252547-21252811(-)$1	264	20	47	22.7933
ACCCUUGAGCCCCUUCCCCAUCAGCCU	chr16:84214952-84215227(-)$1	275	97	124	24.2924
CCUGACACUGGGUCACAGUUGUGUCUA	chr3:48683188-48683456(-)$1	268	110	137	19.8846
ACCUGGAGGUGUGCUGUGUGUCUCCAG	chr20:10633115-10633396(-)$1	281	123	150	22.2318
ACAGAAGGAGAAAACUGGAGCCUUCUG	chr1:226053556-226053828(-)$1	272	28	55	24.4604
UGACCUCUCCUCCUUCUCAGUCAGAGU	chr9:128099148-128099397(+)$1	249	160	187	21.2729
ACCCAGGGAAUGGUUUAGGUCCUGGCA	chr6:43592695-43592972(-)$1	277	87	114	19.9363
CAACCAUCUCUUCUGUCCAUUUUGGUA	chr1:156914883-156915146(-)$1	263	129	156	21.7781
CUCUGUUUUGUUUUGGUUUUUGAUAGG	chr19:5927985-5928266(-)$1	281	142	169	21.0708
GGCAUACACUGGAGAAGAAUGUGUUGG	chr15:72648848-72649103(-)$1	255	151	178	21.5631
GUGCAGAUGCACUUUUUCCUCAUUUGG	chr6:32942088-32942376(+)$1	288	88	115	21.7312
AUGAGAAUGAGUUGUGUGUGAAAUUCU	chr2:70451630-70451919(-)$1	289	73	100	20.1051
AUGUGUUAUUUCAGGAGUUUGUGACAU	chr7:99159812-99160086(+)$1	274	164	191	22.7670
UGACAACAUCUUCACUCACUUUGUCGC	chr17:79684280-79684530(+)$1	250	201	228	21.6823
CGGUGGUCACCAUCGUCCACGACUGCC	chr16:86575697-86575938(-)$1	241	203	230	24.3329
ACCAAAGAUCAACAGCCGCUUCUUUGG	chr2:21257667-21257919(-)$1	252	200	227	24.3520
CCUGGGCACUUCCUCACCCUGCUCAGA	chr3:52019198-52019477(+)$1	279	125	152	22.9369
GGGAUUGGGAGAAGAGAUGACGGAUGA	chr20:44520411-44520667(+)$1	256	13	40	21.0840
AGCCGGAAGAUGCAUAUGAAGACUUUA	chr16:66764016-66764278(-)$1	262	214	241	21.3868
CCAGGGACCAGCAGAAUUUAGUUCUAA	chr2:27729197-27729450(+)$1	253	29	56	24.9234
CUCUACCUGUGAGGUGUGAAGUUGGGG	chr1:44432084-44432361(+)$1	277	58	85	20.4037
AUCCUGCUCUCUCUGCCUCCCAGGCAA	chr11:3063363-3063640(-)$1	277	131	158	22.4586
GUCCCUGCGAGAGGCCCAAGCAGGUGA	chr17:42155932-42156210(-)$1	278	223	250	22.9945
UAAAAUCUACAACUACUACAAGAAGUU	chr11:763578-763851(+)$1	273	184	211	23.7806
CCCCAUCACCACCACAGCCUGUGACCC	chr6:31597177-31597443(+)$1	266	223	250	22.6070
CUGGGACUCACCUGAACCACAGUCUCU	chr3:171395368-171395647(-)$1	279	112	139	23.7744
GGCGCUGCCUCCCCUUUGCCUGCAGCA	chr22:50877973-50878236(+)$1	263	84	111	23.6031
CGUGGAGUACAAGAACAUCAGCUUCAC	chr1:228284879-228285154(+)$1	275	179	206	23.5739
UCGGUGAACAUCCACUACAAGUCACCC	chr16:1812680-1812949(+)$1	269	214	241	21.2031
CAUCCAGCCUCCAUCCUCUGUGGGUGC	chr9:134360198-134360454(+)$1	256	213	240	22.7764
UUUGAUUCAGACUGCAAACUUUCUCCC	chr16:8993507-8993770(-)$1	263	121	148	21.1511
AAUGUGAGAAAUCCGGAACACUGAUAA	chr5:140958641-140958921(-)$1	280	27	54	23.7147
UGGCUGGCGGACCUGGUACAGUCCAGC	chr7:1526621-1526905(-)$1	284	189	216	24.7952
GAGAAGUGCCAUGACUACUACACCACG	chr21:45744844-45745141(+)$1	297	195	222	24.5316
ACCUGAGGAAUCGGCAGCACCCUCACU	chr5:461935-462177(+)$1	242	174	201	24.7383
GCUGGUUCCCCAUCUUAUUCGAACUCU	chr20:47629938-47630211(+)$1	273	226	253	25.0020
AGACCAGGUAAUAUAUGCUCCUGGGCA	chr3:49051473-49051766(+)$1	293	69	96	22.8990
UCAGAAGAACAAAAGGAUGAUUCUGAU	chr13:113835440-113835712(-)$1	272	214	241	21.8866
CAUUUGCAUCUGGUCUGUUUGCAGAGA	chr6:170699946-170700214(+)$1	268	130	157	22.0087
AUGACUGUCUACACAUAGCCGAUCGUC	chr13:115010195-115010490(+)$1	295	87	114	22.5771
ACUCCUGUCCUCUGCUGUCUCCACAGG	chr16:81703569-81703849(+)$1	280	151	178	21.4951
GUGGCGGUGGCCAGUCACCUCUAACUG	chr3:184052354-184052630(+)$1	276	114	141	18.9511
CCCAGGGCAAGAAGUACAAGCCCCUGG	chr9:127620235-127620498(-)$1	263	147	174	21.3263
UGACGUGCCCUCUUCCCUCUGCAGGUC	chr16:28124260-28124524(-)$1	264	129	156	23.3346
CGUGGGGCAGACAAAGGCAGCCCAGGC	chr15:91493158-91493518(+)$1	360	257	284	20.1482
GGUACCCUUCCAGGAAGUGUGGGGCCG	chr14:75416151-75416408(-)$1	257	153	180	23.0920
CAUUGCGUUUGCCACAAUCCCCGCGGC	chr7:4800519-4800808(+)$1	289	194	221	23.2051
ACGUGUCGGGAAGUACAAGAAGACACA	chr1:55349344-55349624(-)$1	280	252	279	20.6035
UAGGUGGGUUCCAGAUUAUCCCCACCC	chr19:19464999-19465271(+)$1	272	69	96	23.1322
GAUGAAAGCUUCAUUCAACCCAUCUGU	chr17:12908277-12908573(-)$1	296	221	248	21.4374
AAGAGCCGCUUCUCCCUCCUGUCCUCU	chr1:19422037-19422296(-)$1	259	3	30	22.2053
CACAGGCUUCACUCAUCACUGCCUGGC	chr4:8217685-8217944(+)$1	259	147	174	21.4656

#DB
)))(((((............)))))..	chr19:45562374-45562660(+)$1	1	54	81	22.3519
(((((................))))))	chr9:130867829-130868109(+)$1	1	180	207	22.7951
(((..(((............))).)))	chr2:97492419-97492696(+)$1	1	167	194	24.1232
((((((((............)))))))	chr20:1143621-1143878(+)$1	1	158	185	21.4949
(.(((((..............))))))	chr17:48445548-48445875(-)$1	1	288	315	23.4380
((.(((..............)))))).	chr5:52223267-52223523(+)$1	1	20	47	22.6353
(((((................))))))	chr17:80202590-80202870(-)$1	1	65	92	22.7836
(((.((((............)))))))	chr16:28884326-28884610(+)$1	1	252	279	23.5945
((((((((............)))))..	chr17:79575743-79576036(-)$1	1	238	265	24.6427
..(((((...............)))))	chr6:52372999-52373252(-)$1	1	82	109	19.7253
(..(((((...........)))))...	chr14:103410721-103410988(-)$1	1	158	185	23.6807
(((((((...............)))))	chr17:38344937-38345227(+)$1	1	6	33	19.5006
))((((((............)))))))	chr17:79634603-79634862(+)$1	1	215	242	22.0069
((((.((.............)).))).	chr2:85576592-85576871(-)$1	1	182	209	22.3926
((((.((.............)))))))	chr2:21252547-21252811(-)$1	1	20	47	22.7933
((..((((............))))...	chr16:84214952-84215227(-)$1	1	97	124	24.2924
(..(((((............)))))..	chr3:48683188-48683456(-)$1	1	110	137	19.8846
(((((((((...........)))))))	chr20:10633115-10633396(-)$1	1	123	150	22.2318
.(((((((............)))))))	chr1:226053556-226053828(-)$1	1	28	55	24.4604
.((.((((..............)))).	chr9:128099148-128099397(+)$1	1	160	187	21.2729
..((((((...........))))))((	chr6:43592695-43592972(-)$1	1	87	114	19.9363
(.((((................)))).	chr1:156914883-156915146(-)$1	1	129	156	21.7781
((((..((.............))..))	chr19:5927985-5928266(-)$1	1	142	169	21.0708
(((..((((...........))))..)	chr15:72648848-72649103(-)$1	1	151	178	21.5631
((.((((((...........)))))).	chr6:32942088-32942376(+)$1	1	88	115	21.7312
((((((((..............)))))	chr2:70451630-70451919(-)$1	1	73	100	20.1051
..(((((((...........)))))))	chr7:99159812-99160086(+)$1	1	164	191	22.7670
.(((((..............)))))((	chr17:79684280-79684530(+)$1	1	201	228	21.6823
((((((((............)))))))	chr16:86575697-86575938(-)$1	1	203	230	24.3329
((((((((............)))))))	chr2:21257667-21257919(-)$1	1	200	227	24.3520
.(((((((...........))))))).	chr3:52019198-52019477(+)$1	1	125	152	22.9369
)).(((.(............).)))..	chr20:44520411-44520667(+)$1	1	13	40	21.0840
((.(................).)))))	chr16:66764016-66764278(-)$1	1	214	241	21.3868
(..(((((............)))))..	chr2:27729197-27729450(+)$1	1	29	56	24.9234
(((((.((...........)).)))))	chr1:44432084-44432361(+)$1	1	58	85	20.4037
..((((..............))))...	chr11:3063363-3063640(-)$1	1	131	158	22.4586
((((((((...........)))))...	chr17:42155932-42156210(-)$1	1	223	250	22.9945
((((.(((............)))..))	chr11:763578-763851(+)$1	1	184	211	23.7806
(((((((((...........))))...	chr6:31597177-31597443(+)$1	1	223	250	22.6070
(.((((((............)))))).	chr3:171395368-171395647(-)$1	1	112	139	23.7744
((.(((((.............))))).	chr22:50877973-50878236(+)$1	1	84	111	23.6031
.(((((((............)))))))	chr1:228284879-228285154(+)$1	1	179	206	23.5739
))(((((..............))))).	chr16:1812680-1812949(+)$1	1	214	241	21.2031
((((((..............)))))))	chr9:134360198-134360454(+)$1	1	213	240	22.7764
...((................))....	chr16:8993507-8993770(-)$1	1	121	148	21.1511
(.(((.((............)).))).	chr5:140958641-140958921(-)$1	1	27	54	23.7147
(.((((((............).)))))	chr7:1526621-1526905(-)$1	1	189	216	24.7952
..(..(((............)))..).	chr21:45744844-45745141(+)$1	1	195	222	24.5316
(..(((((............))))).)	chr5:461935-462177(+)$1	1	174	201	24.7383
(..(((((............)))))..	chr20:47629938-47630211(+)$1	1	226	253	25.0020
...(((((...........)))))...	chr3:49051473-49051766(+)$1	1	69	96	22.8990
((((((..............)))))).	chr13:113835440-113835712(-)$1	1	214	241	21.8866
(...((((...........))))))))	chr6:170699946-170700214(+)$1	1	130	157	22.0087
(((((.(((...........))).)))	chr13:115010195-115010490(+)$1	1	87	114	22.5771
(.((((((..............)))))	chr16:81703569-81703849(+)$1	1	151	178	21.4951
((((((((...............))))	chr3:184052354-184052630(+)$1	1	114	141	18.9511
....((((...........))))..))	chr9:127620235-127620498(-)$1	1	147	174	21.3263
.(((.(((............))).)))	chr16:28124260-28124524(-)$1	1	129	156	23.3346
.)))((((...........)))).(((	chr15:91493158-91493518(+)$1	1	257	284	20.1482
(((.(((.............)))))))	chr14:75416151-75416408(-)$1	1	153	180	23.0920
(((((((..............))))).	chr7:4800519-4800808(+)$1	1	194	221	23.2051
..(((((..............))))).	chr1:55349344-55349624(-)$1	1	252	279	20.6035
..((((((............)))))).	chr19:19464999-19465271(+)$1	1	69	96	23.1322
((((................)))))).	chr17:12908277-12908573(-)$1	1	221	248	21.4374
(((((..((...........)).))))	chr1:19422037-19422296(-)$1	1	3	30	22.2053
(((((((.............)))))((	chr4:8217685-8217944(+)$1	1	147	174	21.4656

#PSSM
e : 0.15	f : 0.10	g : 0.09	c : 0.09	d : 0.09	: : 0.07	h : 0.06	i : 0.06	! : 0.06	= : 0.03	D : 0.03	" : 0.03	# : 0.03	$ : 0.03	[ : 0.01	b : 0.01	H : 0.01	m : 0.01	
g : 0.13	e : 0.10	c : 0.10	! : 0.10	[ : 0.09	f : 0.09	h : 0.06	: : 0.04	i : 0.04	d : 0.04	= : 0.03	" : 0.03	# : 0.03	$ : 0.03	b : 0.01	H : 0.01	D : 0.01	
e : 0.19	g : 0.15	f : 0.10	c : 0.09	! : 0.07	h : 0.06	[ : 0.06	d : 0.06	i : 0.04	= : 0.03	: : 0.03	# : 0.03	b : 0.01	a : 0.01	$ : 0.01	" : 0.01	
e : 0.30	g : 0.15	f : 0.12	c : 0.09	! : 0.06	h : 0.04	[ : 0.04	i : 0.04	d : 0.04	= : 0.03	a : 0.01	b : 0.01	" : 0.01	# : 0.01	
e : 0.28	g : 0.13	d : 0.12	f : 0.10	! : 0.06	c : 0.06	[ : 0.06	h : 0.04	i : 0.04	= : 0.03	y : 0.03	b : 0.01	
e : 0.27	d : 0.15	c : 0.10	f : 0.10	g : 0.09	y : 0.07	i : 0.04	[ : 0.04	h : 0.03	b : 0.03	! : 0.03	= : 0.01	
e : 0.25	d : 0.12	y : 0.09	c : 0.09	g : 0.09	f : 0.09	w : 0.07	b : 0.07	h : 0.03	i : 0.03	[ : 0.01	= : 0.01	! : 0.01	
e : 0.15	w : 0.13	d : 0.12	y : 0.09	f : 0.09	c : 0.07	g : 0.07	v : 0.06	b : 0.06	h : 0.03	x : 0.03	i : 0.03	a : 0.03	= : 0.01	
u : 0.34	w : 0.18	t : 0.13	y : 0.09	v : 0.09	x : 0.04	d : 0.03	i : 0.01	f : 0.01	g : 0.01	c : 0.01	b : 0.01	
u : 0.34	t : 0.24	w : 0.18	y : 0.09	v : 0.09	x : 0.04	
u : 0.34	t : 0.24	w : 0.18	y : 0.09	v : 0.09	x : 0.04	
u : 0.34	t : 0.24	w : 0.18	y : 0.09	v : 0.09	x : 0.04	
u : 0.34	t : 0.24	w : 0.18	y : 0.09	v : 0.09	x : 0.04	
u : 0.34	t : 0.24	w : 0.18	y : 0.09	v : 0.09	x : 0.04	
u : 0.34	t : 0.24	w : 0.18	y : 0.09	v : 0.09	x : 0.04	
u : 0.34	t : 0.24	w : 0.18	y : 0.09	v : 0.09	x : 0.04	
u : 0.34	t : 0.24	w : 0.18	y : 0.09	v : 0.09	x : 0.04	
u : 0.34	t : 0.24	w : 0.18	y : 0.09	v : 0.09	x : 0.04	
u : 0.34	t : 0.24	w : 0.18	y : 0.09	v : 0.09	x : 0.04	
u : 0.34	w : 0.18	t : 0.10	y : 0.09	v : 0.09	x : 0.04	e : 0.04	d : 0.04	f : 0.01	g : 0.01	b : 0.01	
e : 0.16	d : 0.12	c : 0.10	w : 0.10	f : 0.10	b : 0.07	g : 0.07	y : 0.06	x : 0.04	i : 0.04	a : 0.04	v : 0.03	h : 0.01	
e : 0.24	d : 0.12	c : 0.10	f : 0.10	g : 0.09	b : 0.09	] : 0.06	x : 0.04	i : 0.04	w : 0.04	h : 0.01	= : 0.01	y : 0.01	
e : 0.27	d : 0.15	f : 0.13	g : 0.12	c : 0.12	h : 0.04	] : 0.04	i : 0.04	b : 0.03	= : 0.01	x : 0.01	
e : 0.30	g : 0.13	f : 0.13	d : 0.10	c : 0.06	2 : 0.06	] : 0.04	h : 0.04	i : 0.04	= : 0.03	4 : 0.01	: : 0.01	
e : 0.28	g : 0.13	f : 0.13	c : 0.10	3 : 0.09	2 : 0.07	h : 0.04	i : 0.04	= : 0.03	d : 0.03	4 : 0.01	
e : 0.18	g : 0.15	f : 0.12	c : 0.10	3 : 0.09	d : 0.07	2 : 0.06	: : 0.04	h : 0.04	i : 0.04	= : 0.03	4 : 0.01	a : 0.01	] : 0.01	
] : 0.15	g : 0.13	e : 0.12	3 : 0.10	2 : 0.09	: : 0.07	i : 0.06	c : 0.06	d : 0.06	h : 0.04	= : 0.03	f : 0.03	C : 0.01	4 : 0.01	

#score	1480.630077324463
#seq	66
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_CDS_m1_run1.txt

#BEAR
!!hhhhhhhh"""cccddddmmmmdddd333ccc333hh	chr21:35287924-35288197(-)$1	273	118	157	13.2569
bb[a!!a[dddd[bb[cccoooooocccbbdddd]a22a	chr5:137688338-137688618(+)$1	280	109	148	12.9091
a[eeeee[bb!!ccc[bboooooobb]ccc22bb]eeee	chr6:166755853-166756149(-)$1	296	73	112	13.7002
####ggggggg!!eeeeeooooooeeeeeggggggg22b	chr1:109289227-109289509(+)$1	282	62	101	12.1409
::bb[a[ffffff"""cccooooooccc333ffffff]a	chr1:894494-894738(-)$1	244	118	157	12.7270
gg[ggggggg[a[bb[cccooooooccc]bb]a22gggg	chr19:18547571-18547847(-)$1	276	113	152	15.7816
bbdddd[ccc!!ccc[cccoooooocccccc22ccc]dd	chr16:28962291-28962545(+)$1	254	187	226	15.4083
[dddd"""bb"""ccc!!ammmma22ccc22bb333ddd	chr7:99686488-99686804(+)$1	316	152	191	12.4158
eeeee####bb!!a"""ccclllccc333a22bb]eeee	chrX:152957483-152957736(+)$1	253	50	89	13.2403
ccggggggg[a[a[eeeeeooooooeeeee]a]a]gggg	chr9:15422774-15423066(+)$1	292	90	129	13.7685
!gggggggccc[ccc[cccccclllccc22ccc]ccccc	chr2:54197795-54198044(-)$1	249	152	191	13.9224
a[dddd[bb!!bb[ccc[cccmmmmccc]ccc]bb22bb	chr16:75018806-75019087(-)$1	281	173	212	11.7084
""ffffffa"""ccc[aqqqqqqqqa]ccc333a]ffff	chr17:55333991-55334261(+)$1	270	121	160	10.6879
eeee[a[ddddccc####cccmmmmccc333ccc]dddd	chr2:85768646-85768907(+)$1	261	83	122	12.7806
eeeeeeeee[a[a[bbcccooooooccc]bb]a]a22ee	chr7:44887469-44887718(-)$1	249	169	208	13.8796
[a[dddd[ccc[ccc[==========!!dddd[ffffff	chr17:79894942-79895209(-)$1	267	78	117	9.9479
hhhhhhh[a####gggggggmmmmggggggg22a]hhhh	chr6:32095846-32096103(-)$1	257	32	71	11.9225
"a[dddd"""eeeee"""cccmmmmccc22eeeeedddd	chr11:62341201-62341432(-)$1	231	137	176	11.1166
a[iiiiiiiii!!fffffflllffffff]iiiiiiiii]	chr16:447202-447481(+)$1	279	22	61	11.5598
c[aggggggg[==========mmmm==========>>>>	chr10:7830054-7830326(+)$1	272	46	85	12.8082
dd[ccc!!bb[eeeee[bboooooobb]eeeeebb]ccc	chr5:131132508-131132810(-)$1	302	251	290	10.9341
:hhhhhhhh!!ccc!!cccccclllccc]ccc22ccc22	chr12:49524976-49525276(-)$1	300	11	50	12.0320
$$eeeee[bb!!ccc[cccooooooccc]cccbb]eeee	chr19:39138196-39138519(+)$1	323	227	266	16.0884
ee[dddd[bb[a"""cccooooooccca]bbdddd]eee	chr19:18548493-18548757(-)$1	264	144	183	13.4520
==========$$$$$ddddnnnnndddd333========	chr2:111435459-111435729(-)$1	270	98	137	12.8391
!!ddddccc"""ccc[a!!ammmma22a]ccc22ccc33	chr8:30669827-30670092(-)$1	265	41	80	13.7136
ddd[dddd####ffffffaooooooa]ffffffdddddd	chr4:129208779-129209059(-)$1	280	21	60	11.6245
dddd!!ggggggg"""ddddlllddddggggggg22ddd	chr19:5719967-5720250(-)$1	283	81	120	11.6833
!!ggggggg"""ccc[ddddmmmmddddccc4444gggg	chr16:29801967-29802234(+)$1	267	14	53	14.0492
!ccc!!ccc[a!!bb[fffffflllffffff]bb333a]	chr17:27224488-27224741(-)$1	253	30	69	11.4593
hhhhhhhh[a####a[cccnnnnnccc]a4444a]hhhh	chr9:101558621-101558914(-)$1	293	27	66	13.1773
[dddd"""eeeeebb!!cccmmmmccc22bb4444eeee	chr16:18812646-18812968(-)$1	322	191	230	11.8176
###a!!ffffff####cccooooooccc4444ffffff2	chr19:6739607-6739900(+)$1	293	160	199	14.8679
[bb[ffffff!!ccc[cccmmmmccc]cccffffffbb]	chr21:47878917-47879215(+)$1	298	84	123	11.2559
[ffffff[bb"""a[a[cccmmmmccca]a333bbffff	chr19:1605261-1605549(-)$1	288	110	149	13.5744
dddd[ggggggg[a[ddddoooooodddda]gggggggd	chr5:133707165-133707394(+)$1	229	15	54	13.6022
!==========!!a[ccc[ccclllccc]ccc]a22===	chr2:170440775-170441069(+)$1	294	89	128	14.7136
a[hhhhhhhh[ccc[cccaooooooa]ccc]ccchhhhh	chr1:68151561-68151874(+)$1	313	121	160	13.5647
dd::ggggggg[ccc[ddddoooooodddd]ccc]gggg	chr7:128491192-128491450(+)$1	258	183	222	11.6989
[ccc[a[eeeee[ccc[cccnnnnnccc]ccc22eeeee	chr3:122785815-122786174(+)$1	359	216	255	12.6762
""bb[eeeee"""bb"""cccmmmmccc333bb]eeeee	chr2:98262433-98262715(+)$1	282	30	69	13.1997
ccc"""a[eeeee####bboooooobb22eeeee]a333	chr12:56435825-56436138(+)$1	313	140	179	12.2084
bbeeeee[ccc"""ggggggglllggggggg22ccceee	chr20:49307563-49307864(-)$1	301	43	82	11.8992
=[a"""dddd[ccca[cccnnnnnccc]a22cccdddda	chr15:42867759-42868022(+)$1	263	138	177	12.0126
b!!dddd[ggggggg[ccclllcccggggggg]dddd22	chr22:38902133-38902411(-)$1	278	124	163	11.4872
ddddddddccc[cccccclllccc]ccc]ccc4444ddd	chr12:56122010-56122239(-)$1	229	29	68	11.0873
[eeeee"""ggggggg!!cccmmmmccc333ggggggg]	chr22:21348451-21348719(+)$1	268	145	184	13.6157
gg]cccggggggg[ccc[cccmmmmccc]cccggggggg	chr11:67810665-67810942(+)$1	277	153	192	13.0613
dddggggggg!!a[ddddoooooodddd]a22ggggggg	chr7:158622049-158622304(-)$1	255	107	146	13.9427
cc!!bb[bb"""gggggggoooooogggggggbb]bb55	chr5:149827040-149827274(-)$1	234	123	162	11.5060

#otherMatches

#Seq PSSM
GCCCGGGAGAAGAUGGCUGCCCCAGCAGUGUCCGGGCUC	chr21:35287924-35288197(-)$1	273	118	157	13.2569
gcggcgggcgggagcgcgggucaggccggccccggcgau	chr5:137688338-137688618(+)$1	280	109	148	12.9091
CGGGACCGGACUUCCGGCUGGUCUGUGGGGUUUCGGGUU	chr6:166755853-166756149(-)$1	296	73	112	13.7002
AACGCCGCUUCUGCGGCCAAAGUAGGUUGGGAGUGGAAG	chr1:109289227-109289509(+)$1	282	62	101	12.1409
AUGGCAGCUGCGGGGAGCCGCAAGAGGUAAGCCGCGGGU	chr1:894494-894738(-)$1	244	118	157	12.7270
GGAGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGU	chr19:18547571-18547847(-)$1	276	113	152	15.7816
CUUGGUCACCGACAGCGAUGAGGAAAUUCUGGAGGUCGC	chr16:28962291-28962545(+)$1	254	187	226	15.4083
GCUACGAACGGGACCGGAGGAAGCAGCGGGAUGGAGGUG	chr7:99686488-99686804(+)$1	316	152	191	12.4158
UCUGGAAGGGGGUCAAAUCCACGGGAAAGGUACCACUAG	chrX:152957483-152957736(+)$1	253	50	89	13.2403
GAGUGGGGCGAACAUGGCUGAAGGAAGCCGAGGUGGCCC	chr9:15422774-15423066(+)$1	292	90	129	13.7685
AGAgcccccggagccgggcgggcgucccgagccgggccc	chr2:54197795-54198044(-)$1	249	152	191	13.9224
UGGCGGCGCGAUGGAGCAGCGAAAACGUGGUUGUAGAGU	chr16:75018806-75019087(-)$1	281	173	212	11.7084
AAUGGGAGCCAAGGCACCUCGGGCAGCGCCAACGACUCC	chr17:55333991-55334261(+)$1	270	121	160	10.6879
CAAGAUGUUGUGUUUUUUGCUUAUAGGUUUUGACUACAA	chr2:85768646-85768907(+)$1	261	83	122	12.7806
gccgggggcacgggGCCUGGGAGAGCAGAGCGCGGAGGC	chr7:44887469-44887718(-)$1	249	169	208	13.8796
ACGACCCGCGCACGGUAGCUGGGUUGGGGUCGGGCUCCG	chr17:79894942-79895209(-)$1	267	78	117	9.9479
CUUUUUUGAAAGAGUCAACUGAUUAGUUGGUGAUGGGGA	chr6:32095846-32096103(-)$1	257	32	71	11.9225
UGCUGGCUCUGGUGGUUCGGGUCAUCCUAUCCACCGCCA	chr11:62341201-62341432(-)$1	231	137	176	11.1166
GGGCGGCCUCUUCUGGCGCUCCGCGCUGCGGGGGCUGCG	chr16:447202-447481(+)$1	279	22	61	11.5598
CGCGCUGGGGAGCUUCGGCGCAUGCGCGCUGAGGCCUGC	chr10:7830054-7830326(+)$1	272	46	85	12.8082
CCGGCCGCGACGCCCGGGACCCAGAUUGCGGGUUCAGGU	chr5:131132508-131132810(-)$1	302	251	290	10.9341
AGGAGGGGCCAGCGACCGCGGCACCGCCUGUGCCCGCCC	chr12:49524976-49525276(-)$1	300	11	50	12.0320
CGGCCCCAGCAGCGCGGGCAAUGGCGCUGGCGGCGGGGG	chr19:39138196-39138519(+)$1	323	227	266	16.0884
GAAGGGCACGGGACCCGGGAUUCACUGCGCGGCCUGUCU	chr19:18548493-18548757(-)$1	264	144	183	13.4520
GGCGGCGGCUUCUAGUUUGCGGUUCAGGUUUGGCCGCUG	chr2:111435459-111435729(-)$1	270	98	137	12.8391
gacggcggcggagggagaggggagcggcgcccgggccgg	chr8:30669827-30670092(-)$1	265	41	80	13.7136
UAUUGGCUGAGAGGCCCCCAGAUGGGCGGGGCCGGCCGU	chr4:129208779-129209059(-)$1	280	21	60	11.6245
GUGUGAGCCGCCAGUAUGGCCGGGCUAUGGCGGCGAGCA	chr19:5719967-5720250(-)$1	283	81	120	11.6833
AGCUUCCGGCGGCGCGUAGUCUUGAUUGGUGGAACCUGG	chr16:29801967-29802234(+)$1	267	14	53	14.0492
AGCGAGCGGGCGGCCGGCCGCUGGGGGUGGCGGGAUAGG	chr17:27224488-27224741(-)$1	253	30	69	11.4593
GUAggcgcgcggcgcgggcggguggccggaagggggcgc	chr9:101558621-101558914(-)$1	293	27	66	13.1773
AGAUAAUCGCAGCACCAACCUGCUGGUGAGUCCUGGCUG	chr16:18812646-18812968(-)$1	322	191	230	11.8176
GCAGCAUGGAUUGGGGCACUGAGCUGUGGGUAAGUCCAA	chr19:6739607-6739900(+)$1	293	160	199	14.8679
CGGUCCGGUUCCAGCCUCUGCCCGGACGCUAGCCGGCCU	chr21:47878917-47879215(+)$1	298	84	123	11.2559
AGGGUCAUCCUGAGGGUGCGACUCCGCCGCGAUGGUGAC	chr19:1605261-1605549(-)$1	288	110	149	13.5744
ggcggcggcggcggcgAUCCACAGUGAUUcggccgccgc	chr5:133707165-133707394(+)$1	229	15	54	13.6022
CGCUGUCUCUCCAUGCCAGGACUGAGUUGUGGGGGAGGG	chr2:170440775-170441069(+)$1	294	89	128	14.7136
ACCCCUCGCCCUUGCCCGCGUGUAGGAUGGAUAAGGUGG	chr1:68151561-68151874(+)$1	313	121	160	13.5647
CAGCCACCUUCACUAUUGUCACCAAAGAUGCUGGAGAAG	chr7:128491192-128491450(+)$1	258	183	222	11.6989
GUGGCUGCUGCUGGCAAUCUGGGUGAGACUGUGGGGCAG	chr3:122785815-122786174(+)$1	359	216	255	12.6762
CCGAGAGGAGAAAGAAGCCCGCCCCCGGAAGUCCCUCCU	chr2:98262433-98262715(+)$1	282	30	69	13.1997
GCGUGGUGAGGGUGGGGGUUCGGGUGCAGACUCUGGGAU	chr12:56435825-56436138(+)$1	313	140	179	12.2084
CGGCUGGUGGCCAGUGUGGAUGGAAUUUGCAGAGCCCUA	chr20:49307563-49307864(-)$1	301	43	82	11.8992
GGGUUGUGGCAGACGGAUGGCGAACGUGCAGGUCGCCGU	chr15:42867759-42868022(+)$1	263	138	177	12.0126
GAGACGCCUAAACCGCGGCACUGCCCGGUUUGAGCGUAG	chr22:38902133-38902411(-)$1	278	124	163	11.4872
GGCCGGCCGGGAGCCCGGAAACCGAGGUCCCCCUUCGGC	chr12:56122010-56122239(-)$1	229	29	68	11.0873
UGGGGUGCGGGCAGCAGAGCCAAAaggugggugcugcca	chr22:21348451-21348719(+)$1	268	145	184	13.6157
CCAGCCCCGUGGCCGCCAGCUUUGUGGCAGGUGCCGUGG	chr11:67810665-67810942(+)$1	277	153	192	13.0613
GGGGCGCUGGCGCGGGGCUGAGCCGCCCGGGAUCAGCGC	chr7:158622049-158622304(-)$1	255	107	146	13.9427
GCAAGUGAGUACCUGGGUGGAGAGGCAUCCAGCUGGCAA	chr5:149827040-149827274(-)$1	234	123	162	11.5060

#DB
..((((((((...(((((((....))))...)))...))	chr21:35287924-35288197(-)$1	1	118	157	13.2569
((.(..(.((((.((.(((......))))))))).)..)	chr5:137688338-137688618(+)$1	1	109	148	12.9091
(.(((((.((..(((.((......)).)))..)).))))	chr6:166755853-166756149(-)$1	1	73	112	13.7002
....(((((((..(((((......))))))))))))..)	chr1:109289227-109289509(+)$1	1	62	101	12.1409
..((.(.((((((...(((......)))...)))))).)	chr1:894494-894738(-)$1	1	118	157	12.7270
((.(((((((.(.((.(((......))).)).)..))))	chr19:18547571-18547847(-)$1	1	113	152	15.7816
))((((.(((..(((.(((......))))))..))).))	chr16:28962291-28962545(+)$1	1	187	226	15.4083
.((((...((...(((..(....)..)))..))...)))	chr7:99686488-99686804(+)$1	1	152	191	12.4158
(((((....((..(...(((...)))...)..)).))))	chrX:152957483-152957736(+)$1	1	50	89	13.2403
))(((((((.(.(.(((((......))))).).).))))	chr9:15422774-15423066(+)$1	1	90	129	13.7685
.((((((((((.(((.((((((...)))..))).)))))	chr2:54197795-54198044(-)$1	1	152	191	13.9224
(.((((.((..((.(((.(((....))).))).))..))	chr16:75018806-75019087(-)$1	1	173	212	11.7084
..(((((((...(((.(........).)))...).))))	chr17:55333991-55334261(+)$1	1	121	160	10.6879
((((.(.(((((((....(((....)))...))).))))	chr2:85768646-85768907(+)$1	1	83	122	12.7806
))))(((((.(.(.(((((......))).)).).)..))	chr7:44887469-44887718(-)$1	1	169	208	13.8796
.(.((((.(((.(((.((((((((((..((((.((((((	chr17:79894942-79895209(-)$1	1	78	117	9.9479
(((((((.(....(((((((....)))))))..).))))	chr6:32095846-32096103(-)$1	1	32	71	11.9225
.(.((((...(((((...(((....)))..)))))))))	chr11:62341201-62341432(-)$1	1	137	176	11.1166
(.(((((((((..((((((...)))))).))))))))).	chr16:447202-447481(+)$1	1	22	61	11.5598
(.((((((((.((((((((((....))))))))))....	chr10:7830054-7830326(+)$1	1	46	85	12.8082
((.(((..((.(((((.((......)).))))))).)))	chr5:131132508-131132810(-)$1	1	251	290	10.9341
.((((((((..(((..((((((...))).)))..)))..	chr12:49524976-49525276(-)$1	1	11	50	12.0320
..(((((.((..(((.(((......))).))))).))))	chr19:39138196-39138519(+)$1	1	227	266	16.0884
((.((((.((.(...(((......)))).)))))).)))	chr19:18548493-18548757(-)$1	1	144	183	13.4520
((((((((((.....((((.....))))...))))))))	chr2:111435459-111435729(-)$1	1	98	137	12.8391
..(((((((...(((.(..(....)..).)))..)))..	chr8:30669827-30670092(-)$1	1	41	80	13.7136
(((.((((....(((((((......).))))))))))))	chr4:129208779-129209059(-)$1	1	21	60	11.6245
((((..(((((((...((((...)))))))))))..)))	chr19:5719967-5720250(-)$1	1	81	120	11.6833
..(((((((...(((.((((....)))))))....))))	chr16:29801967-29802234(+)$1	1	14	53	14.0492
.(((..(((.(..((.((((((...)))))).))...).	chr17:27224488-27224741(-)$1	1	30	69	11.4593
((((((((.(....(.(((.....))).)....).))))	chr9:101558621-101558914(-)$1	1	27	66	13.1773
.((((...(((((((..(((....)))..))....))))	chr16:18812646-18812968(-)$1	1	191	230	11.8176
...(..((((((....(((......)))....)))))).	chr19:6739607-6739900(+)$1	1	160	199	14.8679
.((.((((((..(((.(((....))).))))))))))).	chr21:47878917-47879215(+)$1	1	84	123	11.2559
.((((((.((...(.(.(((....)))).)...))))))	chr19:1605261-1605549(-)$1	1	110	149	13.5744
((((.(((((((.(.((((......))))).))))))))	chr5:133707165-133707394(+)$1	1	15	54	13.6022
.((((((((((..(.(((.(((...))).))).)..)))	chr2:170440775-170441069(+)$1	1	89	128	14.7136
(.((((((((.(((.((((......).))).))))))))	chr1:68151561-68151874(+)$1	1	121	160	13.5647
))..(((((((.(((.((((......)))).))).))))	chr7:128491192-128491450(+)$1	1	183	222	11.6989
.(((.(.(((((.(((.(((.....))).)))..)))))	chr3:122785815-122786174(+)$1	1	216	255	12.6762
..((.(((((...((...(((....)))...)).)))))	chr2:98262433-98262715(+)$1	1	30	69	13.1997
(((...(.(((((....((......))..))))).)...	chr12:56435825-56436138(+)$1	1	140	179	12.2084
(((((((.(((...(((((((...)))))))..))))))	chr20:49307563-49307864(-)$1	1	43	82	11.8992
(.(...((((.((((.(((.....))).)..))))))))	chr15:42867759-42868022(+)$1	1	138	177	12.0126
(..((((.(((((((.(((...)))))))))).))))..	chr22:38902133-38902411(-)$1	1	124	163	11.4872
))))(((((((.((((((...))).))).)))....)))	chr12:56122010-56122239(-)$1	1	29	68	11.0873
.(((((...(((((((..(((....)))...))))))).	chr22:21348451-21348719(+)$1	1	145	184	13.6157
)).)))(((((((.(((.(((....))).))))))))))	chr11:67810665-67810942(+)$1	1	153	192	13.0613
)))(((((((..(.((((......)))).)..)))))))	chr7:158622049-158622304(-)$1	1	107	146	13.9427
((..((.((...(((((((......))))))))).))..	chr5:149827040-149827274(-)$1	1	123	162	11.5060

#PSSM
[ : 0.14	d : 0.14	! : 0.12	b : 0.08	a : 0.08	e : 0.08	c : 0.08	" : 0.06	# : 0.04	: : 0.04	g : 0.04	h : 0.04	= : 0.04	$ : 0.02	
d : 0.18	[ : 0.12	e : 0.10	c : 0.10	! : 0.08	b : 0.08	g : 0.06	h : 0.06	# : 0.04	" : 0.04	a : 0.04	= : 0.04	: : 0.02	$ : 0.02	f : 0.02	
d : 0.19	e : 0.14	[ : 0.12	h : 0.10	b : 0.06	g : 0.06	c : 0.06	# : 0.04	f : 0.04	a : 0.04	= : 0.04	! : 0.04	i : 0.02	: : 0.02	] : 0.02	
d : 0.23	e : 0.14	g : 0.12	h : 0.10	c : 0.08	a : 0.04	b : 0.04	f : 0.04	= : 0.04	[ : 0.04	" : 0.04	# : 0.02	i : 0.02	: : 0.02	! : 0.02	
d : 0.21	g : 0.16	e : 0.12	h : 0.10	[ : 0.10	! : 0.08	f : 0.06	c : 0.04	= : 0.04	" : 0.04	i : 0.02	b : 0.02	
g : 0.18	d : 0.18	e : 0.12	h : 0.10	! : 0.08	" : 0.08	a : 0.06	f : 0.06	c : 0.04	= : 0.04	# : 0.02	i : 0.02	b : 0.02	
g : 0.21	d : 0.14	[ : 0.12	h : 0.10	e : 0.10	f : 0.08	" : 0.06	a : 0.04	= : 0.04	c : 0.04	# : 0.02	i : 0.02	! : 0.02	
g : 0.21	[ : 0.19	h : 0.08	f : 0.08	" : 0.08	d : 0.08	c : 0.06	e : 0.06	b : 0.04	= : 0.04	# : 0.02	i : 0.02	! : 0.02	
g : 0.21	b : 0.16	c : 0.14	e : 0.10	h : 0.06	d : 0.06	f : 0.06	# : 0.04	a : 0.04	" : 0.04	= : 0.04	i : 0.02	[ : 0.02	
g : 0.19	b : 0.14	c : 0.10	" : 0.10	e : 0.08	d : 0.06	f : 0.06	[ : 0.06	h : 0.04	! : 0.04	# : 0.04	= : 0.04	i : 0.02	a : 0.02	
" : 0.16	! : 0.14	g : 0.14	[ : 0.12	c : 0.08	e : 0.08	a : 0.06	# : 0.06	d : 0.04	f : 0.04	b : 0.02	i : 0.02	$ : 0.02	= : 0.02	
! : 0.19	" : 0.18	[ : 0.12	e : 0.10	g : 0.10	c : 0.08	# : 0.06	f : 0.04	a : 0.04	d : 0.02	b : 0.02	= : 0.02	$ : 0.02	
c : 0.30	" : 0.12	! : 0.10	g : 0.10	[ : 0.08	e : 0.08	a : 0.06	# : 0.06	f : 0.04	b : 0.02	= : 0.02	$ : 0.02	
c : 0.36	b : 0.10	[ : 0.10	" : 0.08	a : 0.08	g : 0.08	e : 0.06	# : 0.06	f : 0.04	= : 0.02	$ : 0.02	
c : 0.32	b : 0.12	g : 0.10	e : 0.08	" : 0.08	[ : 0.08	# : 0.06	f : 0.04	a : 0.04	= : 0.02	! : 0.02	$ : 0.02	d : 0.02	
[ : 0.32	c : 0.18	" : 0.10	g : 0.08	e : 0.06	# : 0.06	d : 0.06	f : 0.04	! : 0.04	b : 0.02	= : 0.02	a : 0.02	
c : 0.38	d : 0.14	! : 0.06	" : 0.06	g : 0.06	f : 0.06	[ : 0.06	e : 0.04	a : 0.04	# : 0.04	= : 0.04	b : 0.02	
c : 0.42	d : 0.14	b : 0.06	! : 0.06	g : 0.06	f : 0.06	e : 0.04	[ : 0.04	= : 0.04	" : 0.04	q : 0.02	# : 0.02	
c : 0.46	d : 0.12	o : 0.08	a : 0.06	g : 0.06	= : 0.04	f : 0.04	b : 0.04	e : 0.02	q : 0.02	! : 0.02	[ : 0.02	l : 0.02	
o : 0.36	c : 0.25	d : 0.08	l : 0.06	n : 0.06	m : 0.04	= : 0.04	g : 0.04	q : 0.02	a : 0.02	f : 0.02	
o : 0.38	c : 0.18	m : 0.16	l : 0.10	n : 0.08	= : 0.04	q : 0.02	f : 0.02	g : 0.02	
o : 0.38	m : 0.30	l : 0.10	c : 0.08	n : 0.08	q : 0.02	= : 0.02	f : 0.02	
o : 0.38	m : 0.30	l : 0.14	n : 0.08	c : 0.04	q : 0.02	= : 0.02	f : 0.02	
o : 0.38	m : 0.25	l : 0.10	c : 0.08	n : 0.08	a : 0.02	q : 0.02	= : 0.02	f : 0.02	d : 0.02	
o : 0.30	c : 0.16	m : 0.14	d : 0.10	l : 0.08	g : 0.04	b : 0.02	e : 0.02	2 : 0.02	q : 0.02	= : 0.02	f : 0.02	a : 0.02	n : 0.02	] : 0.02	
c : 0.50	d : 0.12	g : 0.08	b : 0.06	a : 0.06	e : 0.04	2 : 0.04	= : 0.04	f : 0.04	o : 0.02	
c : 0.48	d : 0.14	] : 0.10	g : 0.08	e : 0.04	f : 0.04	b : 0.04	3 : 0.02	! : 0.02	= : 0.02	2 : 0.02	
c : 0.46	d : 0.12	g : 0.10	f : 0.06	] : 0.06	a : 0.06	e : 0.04	2 : 0.04	3 : 0.02	! : 0.02	= : 0.02	
] : 0.27	3 : 0.14	c : 0.14	g : 0.10	2 : 0.08	e : 0.06	d : 0.06	f : 0.04	a : 0.04	b : 0.02	= : 0.02	4 : 0.02	
c : 0.27	3 : 0.12	g : 0.12	b : 0.10	2 : 0.08	a : 0.08	e : 0.06	d : 0.04	f : 0.04	4 : 0.04	i : 0.02	= : 0.02	
c : 0.21	3 : 0.16	g : 0.12	2 : 0.10	b : 0.08	] : 0.08	e : 0.06	f : 0.06	d : 0.04	4 : 0.04	i : 0.02	= : 0.02	
c : 0.27	2 : 0.12	g : 0.12	4 : 0.08	d : 0.06	f : 0.06	] : 0.06	e : 0.06	b : 0.04	3 : 0.04	= : 0.04	a : 0.02	i : 0.02	
b : 0.14	c : 0.12	g : 0.12	2 : 0.12	f : 0.08	] : 0.08	4 : 0.08	e : 0.06	d : 0.04	a : 0.04	3 : 0.04	= : 0.04	[ : 0.02	i : 0.02	
b : 0.16	c : 0.14	g : 0.12	a : 0.10	d : 0.08	f : 0.08	2 : 0.08	] : 0.06	4 : 0.06	e : 0.04	= : 0.04	3 : 0.02	i : 0.02	
] : 0.23	g : 0.10	c : 0.10	f : 0.08	d : 0.08	3 : 0.06	2 : 0.06	b : 0.06	e : 0.06	4 : 0.06	= : 0.04	a : 0.02	i : 0.02	h : 0.02	
g : 0.18	e : 0.12	f : 0.12	c : 0.10	d : 0.10	2 : 0.08	3 : 0.06	h : 0.06	a : 0.04	] : 0.04	i : 0.02	> : 0.02	= : 0.02	4 : 0.02	b : 0.02	
e : 0.16	g : 0.16	d : 0.16	f : 0.10	2 : 0.08	c : 0.08	3 : 0.06	h : 0.06	= : 0.04	b : 0.04	] : 0.02	i : 0.02	> : 0.02	
e : 0.18	g : 0.16	d : 0.16	h : 0.08	2 : 0.08	f : 0.08	c : 0.04	b : 0.04	= : 0.04	3 : 0.04	] : 0.02	i : 0.02	> : 0.02	a : 0.02	5 : 0.02	
e : 0.18	d : 0.16	g : 0.12	h : 0.08	] : 0.08	a : 0.06	f : 0.06	2 : 0.06	b : 0.04	c : 0.04	= : 0.04	3 : 0.04	> : 0.02	5 : 0.02	

#score	638.5292051423359
#seq	50
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_UTR_m2_run2.txt

#BEAR
""ccceeeee[aooooooa]eeeee]ccc2	chr17:45696948-45697261(+)$1	313	197	227	11.3506
eeeee[dddd!!annnnna22dddd]eeee	chr6:16143132-16143372(+)$1	240	18	48	10.0413
:==========rrrrrrrrr==========	chr11:2972395-2972653(-)$1	258	91	121	10.2378
========"""bbnnnnnbb22========	chr1:28834533-28834804(+)$1	271	140	170	13.2215
==cccccceeeeennnnneeeeea[ddddb	chr16:56970488-56970732(+)$1	244	130	160	9.7938
:ggggggg[ddddoooooodddd]gggggg	chrX:135958522-135958767(-)$1	245	15	45	10.5339
ggggggg"""cccnnnnnccc333gggggg	chr8:124381964-124382314(-)$1	350	248	278	12.4571
cc[bb!!ddddbbnnnnnbb]dddd]bb]c	chr8:64087737-64088051(+)$1	314	97	127	10.4749
e"""ccc!!ddddoooooodddd22ccc22	chr19:10505887-10506200(-)$1	313	243	273	11.2066
e[ggggggg!!bbnnnnnbb22ggggggg4	chr15:101826960-101827230(-)$1	270	189	219	12.2262
ffff!!ffffffooooooffffff22ffff	chr3:195789623-195789907(-)$1	284	211	241	9.3873
###ccc[dddd[aooooooa]ddddccc22	chrX:12994157-12994406(+)$1	249	139	169	11.6081
ccbb[iiiiiiiiimmmmiiiiiiiii333	chr1:46083631-46083916(+)$1	285	17	47	10.4375
$$$$eeeee[cccnnnnnccceeeee4444	chr12:120109988-120110257(+)$1	269	17	47	11.5426
c!!a!!ccc"""aooooooa22ccc22a22	chr15:79172748-79172989(+)$1	241	113	143	12.6208
:::iiiiiiiiiooooooiiiiiiiiiccc	chr17:40146828-40147124(-)$1	296	209	239	10.1483
ffffff[ffffffooooooffffff]ffff	chr7:131099290-131099548(+)$1	258	82	112	9.4344
%%ffffff"""bbnnnnnbb]ffffff333	chr12:57905785-57906091(+)$1	306	31	61	10.3378
ccc[ffffff!!annnnna22ffffff]cc	chr16:28844641-28844912(+)$1	271	175	205	11.0067
d[ccc!!a!!ccclllccc22a4444ccc]	chr3:195791070-195791296(-)$1	226	80	110	9.7851
i####gggggggooooooggggggg55555	chr11:14540413-14540689(-)$1	276	8	38	9.8156
C:===========nnnnn===========:	chr1:249151733-249152032(-)$1	299	177	207	11.8791
ee####gggggggnnnnngggggggeeeee	chr5:38947414-38947674(-)$1	260	45	75	12.0006
eccc[dddd[cccnnnnncccdddd4444c	chr12:133252290-133252549(-)$1	259	194	224	11.2161
$$eeeee!!ddddoooooodddd]eeeee3	chr15:44806658-44806969(+)$1	311	225	255	10.0586
$$$$cccffffffnnnnnffffff333ccc	chr2:209118467-209118807(-)$1	340	179	209	11.2023
dddd"""ccc[bbnnnnnbb22cccdddd7	chr19:8553443-8553708(+)$1	265	123	153	9.6756
ff"""gggggggooooooggggggg4444f	chr3:150276056-150276354(+)$1	298	201	231	12.7725
c!!cccgggggggnnnnnggggggg]ccc3	chr2:232576556-232576794(+)$1	238	21	51	13.6056
c!!bb!!ffffffnnnnnffffff]bb22c	chr16:28969912-28970195(+)$1	283	16	46	10.8449
::ccc"""eeeeennnnneeeee4444ccc	chr21:40627630-40627878(-)$1	248	52	82	9.8050
a[bb!!eeeee[annnnna]eeeeebb]a]	chr4:89670033-89670290(-)$1	257	204	234	11.3439
"==========[aooooooa]=========	chr16:56968986-56969277(+)$1	291	32	62	14.3158
$$gggggggbb[aooooooa]bb]gggggg	chr11:118963000-118963247(+)$1	247	211	241	11.1761
cc[bb$$$$$cccnnnnnccc22bb]ccc5	chr2:48025632-48025884(+)$1	252	31	61	9.9744
###bb[gggggggnnnnnggggggg]bb33	chr1:19439217-19439498(-)$1	281	135	165	13.4761
c[ccc!!ccc[ddddlllddddccc22ccc	chr1:52551670-52551936(+)$1	266	164	194	9.1000
:==========rrrrrrrrr==========	chr9:114153923-114154205(-)$1	282	33	63	10.2378
ffffff[ffffffooooooffffff]ffff	chr7:131099352-131099608(+)$1	256	20	50	9.4344
ccc"""cccddddnnnnndddd22cccccc	chr12:133250151-133250411(-)$1	260	160	190	11.1453
gggg[hhhhhhhhnnnnnhhhhhhhh333g	chr2:170460089-170460343(+)$1	254	61	91	9.9188
c!!a!!ccc"""aooooooa22ccc22a22	chr15:79172795-79173115(+)$1	320	66	96	12.6208
ee[bb!!gggggggmmmmggggggg]bb]e	chr17:73142616-73142893(-)$1	277	97	127	8.6869
b####gggggggooooooggggggg4444b	chr6:41904971-41905241(-)$1	270	205	235	12.9344
ddd[iiiiiiiiinnnnniiiiiiiiiddd	chr17:74732037-74732299(-)$1	262	169	199	12.0890
=============nnnnn============	chr4:80992678-80992947(-)$1	269	223	253	14.6385
==========rrrrrrrrr==========2	chr6:30584859-30585111(-)$1	252	116	146	10.9096
#iiiiiiiii!!aooooooa22iiiiiiii	chr1:65890927-65891243(+)$1	316	193	223	13.2072
###bb####ddddnnnnndddd333bb]ii	chr3:156870680-156870958(-)$1	278	92	122	11.5082
Ea[a[ccc[cccooooooccc]ccc]a]a:	chr1:32403281-32403532(-)$1	251	196	226	10.4951
ggggggg"""cccoooooocccggggggg]	chr18:9594805-9595154(-)$1	349	182	212	12.0796
==========[ddddllldddd]=======	chr17:45696381-45696668(+)$1	287	177	207	10.7452
c[bbaccc[ddddoooooodddd]ccc]a]	chr18:33749904-33750169(+)$1	265	73	103	11.1073
[eeeee[aeeeeennnnneeeee]a]eeee	chr2:38804550-38804807(-)$1	257	47	77	10.0605
=!!dddd[ddddoooooodddd333dddd4	chr19:6421569-6421817(-)$1	248	52	82	10.0621
d####gggggggooooooggggggg4444d	chr1:224492673-224492975(-)$1	302	112	142	13.0388
fff==========nnnnn==========55	chr14:70237019-70237388(+)$1	369	136	166	12.7901

#otherMatches

#Seq PSSM
UUAAGGUAAGGAAAAUACUGUUUACUCUUC	chr17:45696948-45697261(+)$1	313	197	227	11.3506
UUCAUCAGUGUUAGUAUAUUUCACUCGUGA	chr6:16143132-16143372(+)$1	240	18	48	10.0413
UCACUUUUUAAAUACAGGAAUUAGAAGGUG	chr11:2972395-2972653(-)$1	258	91	121	10.2378
UGAGUAAAUCUGCUAAUUGUUUUUUGCUUA	chr1:28834533-28834804(+)$1	271	140	170	13.2215
GCCUGCUGGUUCUAAUCGGGGACAGUAUCC	chr16:56970488-56970732(+)$1	244	130	160	9.7938
AGAGGACCACCACCAAGAAGUGGGGGUCCU	chrX:135958522-135958767(-)$1	245	15	45	10.5339
UGGAAAGUAAGUGCUAUACAUACUCUUUCC	chr8:124381964-124382314(-)$1	350	248	278	12.4571
UGCUGCGAGUUUCAUAAAGAUAACUACAAC	chr8:64087737-64088051(+)$1	314	97	127	10.4749
GAGGAGACAGCCAAUUACCUGGUCAUUUGG	chr19:10505887-10506200(-)$1	313	243	273	11.2066
AUUAAAAUUGUCUAAAUGAGUAAAUUUUAC	chr15:101826960-101827230(-)$1	270	189	219	12.2262
GACACGAGCUUGUGGGCUUAGGCUGUUGUC	chr3:195789623-195789907(-)$1	284	211	241	9.3873
GUUCCCAGCCCAGAGACAGCGGGGCGGGUG	chrX:12994157-12994406(+)$1	249	139	169	11.6081
CUUCCUAUGACUGAGGCCUCAGUUAUAUAA	chr1:46083631-46083916(+)$1	285	17	47	10.4375
AACCAAGAUAGUAACAGCUGCGUCUUUAGA	chr12:120109988-120110257(+)$1	269	17	47	11.5426
GGUUGCCAUAAAGGACAAACAAGUGAAAUA	chr15:79172748-79172989(+)$1	241	113	143	12.6208
AGAUUUUGAGAAGCGAGAUUUUCGGAAGGU	chr17:40146828-40147124(-)$1	296	209	239	10.1483
CCUUUAAAAGAAACUAUUAUUUCUUCUAAA	chr7:131099290-131099548(+)$1	258	82	112	9.4344
UAUUGGCUAUCUGUCCAUCACAGCCAACUA	chr12:57905785-57906091(+)$1	306	31	61	10.3378
UCUGCUGUCUGUGGUGAGCUGGGACAGGAG	chr16:28844641-28844912(+)$1	271	175	205	11.0067
AAACUUGCCCAGAUGUUCUCAGAUAUGGUC	chr3:195791070-195791296(-)$1	226	80	110	9.7851
UGAAUGGAAAUACAAGCAUAUUUCUUAAUG	chr11:14540413-14540689(-)$1	276	8	38	9.8156
UCUCAGGAUCUAGUGUGUCUAGGUUCUGAA	chr1:249151733-249152032(-)$1	299	177	207	11.8791
GAAGGUAGGAAUAUAUGUUAUUUCUUCAUA	chr5:38947414-38947674(-)$1	260	45	75	12.0006
AUCAUGGUCACCUACAACGGGGACUUUUUU	chr12:133252290-133252549(-)$1	259	194	224	11.2161
AUGUAUUUUUAUUUUAUUCAAUAUAGUACC	chr15:44806658-44806969(+)$1	311	225	255	10.0586
AAAUCUAUUCACUGUCAAGGUGAGAAUUAG	chr2:209118467-209118807(-)$1	340	179	209	11.2023
UGUCCUAGGCCACGUGCUGUACGCCGACAU	chr19:8553443-8553708(+)$1	265	123	153	9.6756
UCAUUUACAUAACAUAUUUUGUGUGUCACG	chr3:150276056-150276354(+)$1	298	201	231	12.7725
UGGCCUGUUUUCUGUCGAGGAGAAUGAGGA	chr2:232576556-232576794(+)$1	238	21	51	13.6056
UGAGGAGCUUAGCAAGUAGCUAAGGCCAGA	chr16:28969912-28970195(+)$1	283	16	46	10.8449
GUGCUUGUUACAUGCUAAAUGUAUAUUAGU	chr21:40627630-40627878(-)$1	248	52	82	9.8050
AGCUGUGGCUUCUGUACAACAAGCCAGGUG	chr4:89670033-89670290(-)$1	257	204	234	11.3439
AGUGUUUUCCCGUGAUGCUGGGGGGAAACA	chr16:56968986-56969277(+)$1	291	32	62	14.3158
AAGGGCCUUCCUGAGGCACCUGGUAGGGCC	chr11:118963000-118963247(+)$1	247	211	241	11.1761
agucaaaaaaucauaaguugaacugucuua	chr2:48025632-48025884(+)$1	252	31	61	9.9744
AGAAAGUCUUUGCUUCGCGCAAAGAGUUGU	chr1:19439217-19439498(-)$1	281	135	165	13.4761
AUGUUCCAGGUAAGUGACAUUUCCUUAGAC	chr1:52551670-52551936(+)$1	266	164	194	9.1000
AUCGUAUUGGCUAGUUGAAUGUUGGUAUGA	chr9:114153923-114154205(-)$1	282	33	63	10.2378
CCUUUAAAAGAAACUAUUAUUUCUUCUAAA	chr7:131099352-131099608(+)$1	256	20	50	9.4344
UCUCAAGGCGGCCGCCAAGGCCAAGCUAGG	chr12:133250151-133250411(-)$1	260	160	190	11.1453
GGAGCACAGGGAUCAGUUGUCCUUGUUUUU	chr2:170460089-170460343(+)$1	254	61	91	9.9188
GGUUGCCAUAAAGGACAAACAAGUGAAAUA	chr15:79172795-79173115(+)$1	320	66	96	12.6208
AUUUUUUUCUUUUCUAGGGAGAAGGUGAUA	chr17:73142616-73142893(-)$1	277	97	127	8.6869
CCCCGUGACCGACAGGCCUUGGUCAAAAAG	chr6:41904971-41905241(-)$1	270	205	235	12.9344
GCUGCUCGGAGGUUACUCACCUUUGGGAGU	chr17:74732037-74732299(-)$1	262	169	199	12.0890
CUUUACUUUUCUAGGCAGUGGAGAAGUAGA	chr4:80992678-80992947(-)$1	269	223	253	14.6385
UUUGCCUACUUUGUCGUCUAGUGGGUAAAA	chr6:30584859-30585111(-)$1	252	116	146	10.9096
GGGUGUUAGAGAGUUCGGUCAAUUUAGCAC	chr1:65890927-65891243(+)$1	316	193	223	13.2072
AAGGAGUUGGGAUUUUGUGUUCAUGUCAAG	chr3:156870680-156870958(-)$1	278	92	122	11.5082
gaguguccgugcgaggagguggggggagug	chr1:32403281-32403532(-)$1	251	196	226	10.4951
UUUUAUUAACUUCAGUAGGGAAAAUGAAAG	chr18:9594805-9595154(-)$1	349	182	212	12.0796
AAUCAUGGAUAUUAUUUAGUGACAUCCAUG	chr17:45696381-45696668(+)$1	287	177	207	10.7452
AAACCUUGCAAAGAGAAGGCUUUACAGUGU	chr18:33749904-33750169(+)$1	265	73	103	11.1073
UGUUUUGAAUGGGUGUUUCCCAUCUGAGAA	chr2:38804550-38804807(-)$1	257	47	77	10.0605
CAGCAUCAGGUUCGAGGCGGCCGUGGGUGG	chr19:6421569-6421817(-)$1	248	52	82	10.0621
AAAAGAUUCUUCUCUUUUGGAGAGUGAUAU	chr1:224492673-224492975(-)$1	302	112	142	13.0388
UUGCUUAACACAAUUAUCUUGUGUUAAGGA	chr14:70237019-70237388(+)$1	369	136	166	12.7901

#DB
..((((((((.(......).))))).))).	chr17:45696948-45697261(+)$1	1	197	227	11.3506
(((((.((((..(.....)..)))).))))	chr6:16143132-16143372(+)$1	1	18	48	10.0413
.((((((((((.........))))))))))	chr11:2972395-2972653(-)$1	1	91	121	10.2378
((((((((...((.....))..))))))))	chr1:28834533-28834804(+)$1	1	140	170	13.2215
))))))))(((((.....)))))(.(((((	chr16:56970488-56970732(+)$1	1	130	160	9.7938
.(((((((.((((......)))).))))))	chrX:135958522-135958767(-)$1	1	15	45	10.5339
(((((((...(((.....)))...))))))	chr8:124381964-124382314(-)$1	1	248	278	12.4571
((.((..((((((.....)).)))).)).)	chr8:64087737-64088051(+)$1	1	97	127	10.4749
(...(((..((((......))))..)))..	chr19:10505887-10506200(-)$1	1	243	273	11.2066
(.(((((((..((.....))..))))))).	chr15:101826960-101827230(-)$1	1	189	219	12.2262
((((..((((((......))))))..))))	chr3:195789623-195789907(-)$1	1	211	241	9.3873
...(((.((((.(......).)))))))..	chrX:12994157-12994406(+)$1	1	139	169	11.6081
((((.(((((((((....)))))))))...	chr1:46083631-46083916(+)$1	1	17	47	10.4375
....(((((.(((.....))))))))....	chr12:120109988-120110257(+)$1	1	17	47	11.5426
(..(..(((...(......)..)))..)..	chr15:79172748-79172989(+)$1	1	113	143	12.6208
...(((((((((......)))))))))(((	chr17:40146828-40147124(-)$1	1	209	239	10.1483
((((((.((((((......)))))).))))	chr7:131099290-131099548(+)$1	1	82	112	9.4344
..((((((...((.....)).))))))...	chr12:57905785-57906091(+)$1	1	31	61	10.3378
(((.((((((..(.....)..)))))).))	chr16:28844641-28844912(+)$1	1	175	205	11.0067
(.(((..(..(((...)))..)....))).	chr3:195791070-195791296(-)$1	1	80	110	9.7851
(....(((((((......))))))).....	chr11:14540413-14540689(-)$1	1	8	38	9.8156
(.(((((((((((.....))))))))))).	chr1:249151733-249152032(-)$1	1	177	207	11.8791
((....(((((((.....))))))))))))	chr5:38947414-38947674(-)$1	1	45	75	12.0006
((((.((((.(((.....)))))))....)	chr12:133252290-133252549(-)$1	1	194	224	11.2161
..(((((..((((......)))).))))).	chr15:44806658-44806969(+)$1	1	225	255	10.0586
....(((((((((.....))))))...)))	chr2:209118467-209118807(-)$1	1	179	209	11.2023
((((...(((.((.....))..))))))).	chr19:8553443-8553708(+)$1	1	123	153	9.6756
((...(((((((......)))))))....)	chr3:150276056-150276354(+)$1	1	201	231	12.7725
(..((((((((((.....))))))).))).	chr2:232576556-232576794(+)$1	1	21	51	13.6056
(..((..((((((.....)))))).))..)	chr16:28969912-28970195(+)$1	1	16	46	10.8449
..(((...(((((.....)))))....)))	chr21:40627630-40627878(-)$1	1	52	82	9.8050
(.((..(((((.(.....).))))))).).	chr4:89670033-89670290(-)$1	1	204	234	11.3439
.((((((((((.(......).)))))))))	chr16:56968986-56969277(+)$1	1	32	62	14.3158
..(((((((((.(......).)).))))))	chr11:118963000-118963247(+)$1	1	211	241	11.1761
((.((.....(((.....)))..)).))).	chr2:48025632-48025884(+)$1	1	31	61	9.9744
...((.(((((((.....))))))).))..	chr1:19439217-19439498(-)$1	1	135	165	13.4761
(.(((..(((.((((...)))))))..)))	chr1:52551670-52551936(+)$1	1	164	194	9.1000
.((((((((((.........))))))))))	chr9:114153923-114154205(-)$1	1	33	63	10.2378
((((((.((((((......)))))).))))	chr7:131099352-131099608(+)$1	1	20	50	9.4344
(((...(((((((.....))))..))))))	chr12:133250151-133250411(-)$1	1	160	190	11.1453
((((.((((((((.....))))))))...)	chr2:170460089-170460343(+)$1	1	61	91	9.9188
(..(..(((...(......)..)))..)..	chr15:79172795-79173115(+)$1	1	66	96	12.6208
((.((..(((((((....))))))).)).)	chr17:73142616-73142893(-)$1	1	97	127	8.6869
(....(((((((......)))))))....)	chr6:41904971-41905241(-)$1	1	205	235	12.9344
(((.(((((((((.....))))))))))))	chr17:74732037-74732299(-)$1	1	169	199	12.0890
(((((((((((((.....))))))))))))	chr4:80992678-80992947(-)$1	1	223	253	14.6385
((((((((((.........)))))))))).	chr6:30584859-30585111(-)$1	1	116	146	10.9096
.(((((((((..(......)..))))))))	chr1:65890927-65891243(+)$1	1	193	223	13.2072
...((....((((.....))))...)).))	chr3:156870680-156870958(-)$1	1	92	122	11.5082
)(.(.(((.(((......))).))).).).	chr1:32403281-32403532(-)$1	1	196	226	10.4951
(((((((...(((......)))))))))).	chr18:9594805-9595154(-)$1	1	182	212	12.0796
((((((((((.((((...)))).)))))))	chr17:45696381-45696668(+)$1	1	177	207	10.7452
(.((((((.((((......)))).))).).	chr18:33749904-33750169(+)$1	1	73	103	11.1073
.(((((.((((((.....))))).).))))	chr2:38804550-38804807(-)$1	1	47	77	10.0605
(..((((.((((......))))...)))).	chr19:6421569-6421817(-)$1	1	52	82	10.0621
(....(((((((......)))))))....)	chr1:224492673-224492975(-)$1	1	112	142	13.0388
(((((((((((((.....))))))))))..	chr14:70237019-70237388(+)$1	1	136	166	12.7901

#PSSM
c : 0.19	e : 0.10	= : 0.10	: : 0.08	f : 0.08	# : 0.07	$ : 0.07	d : 0.07	g : 0.05	" : 0.03	% : 0.01	i : 0.01	C : 0.01	a : 0.01	b : 0.01	E : 0.01	[ : 0.01	
= : 0.14	c : 0.10	# : 0.10	[ : 0.08	f : 0.08	! : 0.08	e : 0.07	g : 0.07	$ : 0.07	: : 0.05	" : 0.03	d : 0.03	% : 0.01	i : 0.01	a : 0.01	
c : 0.14	= : 0.14	# : 0.12	g : 0.10	f : 0.08	! : 0.08	[ : 0.07	e : 0.05	b : 0.05	" : 0.03	$ : 0.03	d : 0.03	: : 0.01	i : 0.01	
= : 0.15	b : 0.15	c : 0.14	g : 0.10	f : 0.07	# : 0.07	e : 0.05	" : 0.05	a : 0.05	$ : 0.03	i : 0.03	[ : 0.03	d : 0.03	
c : 0.15	= : 0.15	b : 0.10	g : 0.08	e : 0.07	! : 0.07	[ : 0.07	f : 0.07	# : 0.07	i : 0.05	" : 0.05	a : 0.01	d : 0.01	
= : 0.15	g : 0.15	! : 0.15	c : 0.12	e : 0.07	i : 0.07	f : 0.07	" : 0.05	[ : 0.03	# : 0.03	d : 0.03	$ : 0.01	h : 0.01	
g : 0.21	= : 0.15	c : 0.14	! : 0.08	e : 0.07	[ : 0.07	i : 0.07	d : 0.05	f : 0.05	" : 0.03	$ : 0.01	h : 0.01	# : 0.01	
g : 0.19	= : 0.15	c : 0.14	f : 0.12	d : 0.07	i : 0.07	e : 0.05	" : 0.05	! : 0.03	a : 0.03	$ : 0.01	h : 0.01	# : 0.01	[ : 0.01	
g : 0.17	= : 0.14	e : 0.10	f : 0.10	d : 0.08	c : 0.08	" : 0.07	i : 0.07	[ : 0.05	! : 0.05	$ : 0.01	h : 0.01	# : 0.01	
d : 0.17	= : 0.14	g : 0.14	" : 0.10	f : 0.10	e : 0.08	i : 0.07	c : 0.05	! : 0.03	[ : 0.03	b : 0.01	$ : 0.01	h : 0.01	
d : 0.15	g : 0.14	c : 0.12	= : 0.10	f : 0.08	[ : 0.07	! : 0.07	" : 0.07	e : 0.07	i : 0.05	b : 0.01	h : 0.01	r : 0.01	
d : 0.15	g : 0.14	c : 0.12	b : 0.08	f : 0.08	[ : 0.07	! : 0.05	r : 0.05	e : 0.05	i : 0.05	= : 0.05	" : 0.03	a : 0.01	h : 0.01	
o : 0.15	a : 0.15	d : 0.14	c : 0.10	b : 0.08	f : 0.07	g : 0.07	r : 0.05	e : 0.05	= : 0.05	i : 0.03	h : 0.01	
n : 0.47	o : 0.38	r : 0.05	d : 0.03	i : 0.01	l : 0.01	g : 0.01	
n : 0.47	o : 0.38	r : 0.05	m : 0.03	d : 0.03	l : 0.01	
n : 0.47	o : 0.38	r : 0.05	l : 0.05	m : 0.03	
n : 0.47	o : 0.38	r : 0.05	m : 0.03	l : 0.03	c : 0.01	
n : 0.47	o : 0.38	r : 0.05	m : 0.03	l : 0.03	c : 0.01	
o : 0.22	g : 0.14	c : 0.10	b : 0.08	d : 0.08	a : 0.07	r : 0.05	e : 0.05	f : 0.05	i : 0.05	= : 0.05	h : 0.01	
d : 0.15	g : 0.14	c : 0.10	a : 0.10	b : 0.08	f : 0.08	= : 0.07	2 : 0.05	e : 0.05	i : 0.05	] : 0.03	r : 0.03	h : 0.01	
2 : 0.15	d : 0.15	g : 0.14	= : 0.10	c : 0.10	e : 0.08	] : 0.08	f : 0.08	i : 0.05	h : 0.01	
d : 0.22	g : 0.14	= : 0.12	2 : 0.12	f : 0.12	e : 0.10	i : 0.05	3 : 0.01	a : 0.01	b : 0.01	h : 0.01	] : 0.01	c : 0.01	
g : 0.17	d : 0.14	= : 0.14	f : 0.12	e : 0.10	c : 0.08	i : 0.07	3 : 0.05	2 : 0.03	4 : 0.01	b : 0.01	h : 0.01	] : 0.01	
g : 0.17	= : 0.15	f : 0.12	] : 0.08	c : 0.08	d : 0.07	i : 0.07	e : 0.05	3 : 0.05	2 : 0.03	4 : 0.03	a : 0.01	b : 0.01	h : 0.01	
g : 0.22	= : 0.15	c : 0.12	e : 0.07	d : 0.07	i : 0.07	f : 0.07	3 : 0.05	2 : 0.03	4 : 0.03	[ : 0.01	] : 0.01	b : 0.01	h : 0.01	a : 0.01	
] : 0.19	= : 0.15	4 : 0.10	g : 0.08	c : 0.07	2 : 0.07	i : 0.07	d : 0.05	e : 0.05	b : 0.05	f : 0.03	5 : 0.01	3 : 0.01	h : 0.01	
= : 0.15	c : 0.14	b : 0.10	4 : 0.10	g : 0.08	f : 0.08	e : 0.07	i : 0.07	d : 0.05	2 : 0.05	3 : 0.03	5 : 0.01	a : 0.01	
c : 0.19	= : 0.15	g : 0.08	4 : 0.08	] : 0.08	e : 0.07	d : 0.07	b : 0.05	f : 0.05	3 : 0.05	a : 0.03	5 : 0.01	2 : 0.01	i : 0.01	
c : 0.17	= : 0.14	g : 0.08	2 : 0.08	4 : 0.08	e : 0.07	d : 0.07	3 : 0.07	f : 0.05	a : 0.05	] : 0.03	5 : 0.03	i : 0.03	
c : 0.15	2 : 0.10	= : 0.10	3 : 0.08	e : 0.07	g : 0.07	f : 0.07	] : 0.07	4 : 0.05	5 : 0.05	b : 0.03	: : 0.03	d : 0.03	i : 0.03	7 : 0.01	

#score	637.8269322232367
#seq	57
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_UTR_m2_run2.txt

#BEAR
==========nnnnn=========	chr9:79009073-79009363(-)$1	290	34	58	9.8579
""ggggggg[annnnna]gggggg	chr3:128211703-128211981(+)$1	278	131	155	9.4881
iiiiiiiiillliiiiiiiiieee	chr17:79879790-79880035(-)$1	245	34	58	7.8477
cccc[bbcccooooooccc]bb]c	chr19:2270267-2270511(+)$1	244	185	209	11.1571
[ggggggg[arrrrrrrrra]ggg	chr11:770339-770639(-)$1	300	141	165	8.1909
c[hhhhhhhhoooooohhhhhhhh	chr8:142441405-142441667(+)$1	262	37	61	12.4753
[bbccc[cccooooooccc]ccc2	chr3:133465149-133465428(+)$1	279	29	53	11.6961
iiiiiiii[aooooooa]iiiiii	chr16:89367078-89367334(-)$1	256	117	141	13.8208
iiiiiiiiirrrrrrrrriiiiii	chr20:34252567-34252897(-)$1	330	226	250	9.1592
bb[a[eeeeeooooooeeeeea]b	chr17:7477031-7477316(+)$1	285	64	88	11.0130
ddbb[eeeeeooooooeeeee]bb	chr1:228675175-228675445(+)$1	270	134	158	10.4239
gggg[eeeeeooooooeeeee000	chr11:111896272-111896536(+)$1	264	49	73	10.0547
!!ccc[ddddoooooodddd22cc	chr10:105727017-105727340(+)$1	323	166	190	11.1047
ffffff[cccooooooccc]ffff	chr20:361800-362077(+)$1	277	28	52	11.0199
ffffffddddooooooddddiiii	chr7:156931672-156931985(+)$1	313	149	173	10.8708
"""ggggggglllggggggg]ggg	chr17:38153988-38154257(+)$1	269	119	143	8.3299
[dddd[ddddoooooodddddddd	chr4:74283705-74283943(+)$1	238	186	210	10.1069
]cccgggggggooooooggggggg	chr9:116822419-116822650(-)$1	231	101	125	11.1470
ee[bb[bb[aooooooa]bb]bb]	chr1:32403758-32404012(-)$1	254	186	210	9.7940
hhhhhhh[bboooooobb]hhhhh	chr19:18530345-18530622(+)$1	277	125	149	12.2006
iiiiiiiiiooooooiiiiiiiii	chr5:179247988-179248234(+)$1	246	82	106	12.7158
dddd[eeeeeooooooeeeee]dd	chr19:18433727-18433995(-)$1	268	150	174	10.7610
!!iiiiiiiiinnnnniiiiiiii	chr9:140175279-140175523(+)$1	244	213	237	10.2347
c[bb[eeeeeooooooeeeee]bb	chr12:123998038-123998279(-)$1	241	118	142	10.9487
f[dddd!!bboooooobb]dddd]	chr16:89043056-89043321(-)$1	265	43	67	10.9822
eeeeeeeebboooooobb]eeeee	chr19:2151268-2151556(-)$1	288	223	247	10.5351
d!!gggggggooooooggggggg2	chr3:133476588-133476891(+)$1	303	204	228	12.9027
[iiiiiiiiiooooooiiiiiiii	chr2:10588154-10588409(-)$1	255	69	93	14.0788
"""ccc[cccooooooccc]ccc]	chr19:4038174-4038426(+)$1	252	17	41	12.3631
dddd!!ddddoooooodddd]ddd	chr3:186330821-186331092(+)$1	271	103	127	10.3394
cc[dddd[bboooooobbdddd]c	chr3:133474135-133474436(+)$1	301	115	139	10.9153
))hhhhhhhhoooooohhhhhhhh	chr16:29822005-29822249(+)$1	244	92	116	11.1491
c::gggggggooooooggggggge	chr1:2125381-2125676(-)$1	295	116	140	10.7688
fffff!!cccooooooccc22fff	chr11:64014049-64014310(-)$1	261	74	98	10.9628
eee!!eeeeeooooooeeeee22e	chr12:132402733-132403010(+)$1	277	11	35	10.5638
b[iiiiiiiiinnnnniiiiiiii	chr16:89980254-89980515(+)$1	261	41	65	10.0082
bbhhhhhhhhoooooohhhhhhhh	chr19:2425720-2425989(-)$1	269	50	74	11.8789
b!!gggggggooooooggggggg2	chr19:2425983-2426256(-)$1	273	211	235	12.8988
iiiiiii[bboooooobb]iiiii	chr1:2126017-2126311(-)$1	294	195	219	13.4193
hhhhhhh[ccclllccc]hhhhhh	chr17:7154514-7154776(-)$1	262	129	153	8.0381
fffff!!cccooooooccc22fff	chr11:64014144-64014445(-)$1	301	209	233	10.9628
hhhhhhh[bboooooobb]hhhhh	chr1:1284352-1284629(-)$1	277	30	54	12.2006
hhhhhhh[bboooooobb]hhhhh	chr2:216300520-216300801(-)$1	281	155	179	12.2006
b[dddd!!bboooooobbdddd]b	chr22:50018090-50018335(-)$1	245	189	213	10.6847
:iiiiiiiiiooooooiiiiiiii	chr16:89556637-89556892(-)$1	255	28	52	13.0217

#otherMatches

#Seq PSSM
GUCUCCGCUGCCCUCCAGCGGAGA	chr9:79009073-79009363(-)$1	290	34	58	9.8579
CCUGGGCGCGGGGUGGCGGCGCUC	chr3:128211703-128211981(+)$1	278	131	155	9.4881
GCUCUGCUCUGAGAGUAGGGCGGG	chr17:79879790-79880035(-)$1	245	34	58	7.8477
GACGCGCCGGGCGAGGCCGCGCAC	chr19:2270267-2270511(+)$1	244	185	209	11.1571
ACCCACCACCUCUUUCACUGUUGG	chr11:770339-770639(-)$1	300	141	165	8.1909
GCCAGGCUGGUCUCCUCUAGCCUG	chr8:142441405-142441667(+)$1	262	37	61	12.4753
GCGCCCAGCCCGCCCAGGCCGGGA	chr3:133465149-133465428(+)$1	279	29	53	11.6961
CACCCUGGUCUCUGGUGCCUGGGG	chr16:89367078-89367334(-)$1	256	117	141	13.8208
CGCAGCCCCUGAACGGGUGGGGCU	chr20:34252567-34252897(-)$1	330	226	250	9.1592
CAACGCGAGGGGGGGGCUUCGGCU	chr17:7477031-7477316(+)$1	285	64	88	11.0130
GCCGAGGAGGACGGGCCCUUCCCG	chr1:228675175-228675445(+)$1	270	134	158	10.4239
CGCUCGUCGCAACAGCGUGACUAC	chr11:111896272-111896536(+)$1	264	49	73	10.0547
GACCCGUCGGAUCAGGCCGGGUGG	chr10:105727017-105727340(+)$1	323	166	190	11.1047
CGGCCUGCGGACUcgcccggaggc	chr20:361800-362077(+)$1	277	28	52	11.0199
cgggcucgggucgccucccggccg	chr7:156931672-156931985(+)$1	313	149	173	10.8708
GUGUACUCCUUUAGGGAGUGGGGG	chr17:38153988-38154257(+)$1	269	119	143	8.3299
GUGAACAGGCGACCAUGCUUUUCA	chr4:74283705-74283943(+)$1	238	186	210	10.1069
UGAUGAGGAGCUGCUGCGCUUCUC	chr9:116822419-116822650(-)$1	231	101	125	11.1470
gcggcagcaggagacgcagcggcg	chr1:32403758-32404012(-)$1	254	186	210	9.7940
GGGGGCAAGGGUUCGGCCGUGCCC	chr19:18530345-18530622(+)$1	277	125	149	12.2006
GCGGCUGCUGAGCCGGGUGGCCGC	chr5:179247988-179248234(+)$1	246	82	106	12.7158
GUCCCCGCCGGCACCAUGGUGAGG	chr19:18433727-18433995(-)$1	268	150	174	10.7610
AGCCGGUGGCUUCUGUGGUCGCCG	chr9:140175279-140175523(+)$1	244	213	237	10.2347
GAGCACUUCACAUCGAUGAAGCGU	chr12:123998038-123998279(-)$1	241	118	142	10.9487
AAAGGCAGUCCUGGUAGAGGCCUG	chr16:89043056-89043321(-)$1	265	43	67	10.9822
AUGGCCCUCAAGAUGGUGAAGGGC	chr19:2151268-2151556(-)$1	288	223	247	10.5351
GAGUACCUGGGAAGAACCAGGUGA	chr3:133476588-133476891(+)$1	303	204	228	12.9027
ggcgggggcggccgAGCGCUCCUG	chr2:10588154-10588409(-)$1	255	69	93	14.0788
ACCAGGACGCCGCCCCGCGCCCUC	chr19:4038174-4038426(+)$1	252	17	41	12.3631
GCAGCCAUGAAGUCCCUCGUCCUG	chr3:186330821-186331092(+)$1	271	103	127	10.3394
GGGACGGACUUCCCCCAGCUGUGU	chr3:133474135-133474436(+)$1	301	115	139	10.9153
UACCUUCAUAAGGUGGUAUGGGGG	chr16:29822005-29822249(+)$1	244	92	116	11.1491
CCGCCCCUGGUUUCUCCUGGGGGG	chr1:2125381-2125676(-)$1	295	116	140	10.7688
CCGGCGAGCUAACCCGAGCCAGCC	chr11:64014049-64014310(-)$1	261	74	98	10.9628
CUCCUCCCAGGCAGAUCUGGGCUG	chr12:132402733-132403010(+)$1	277	11	35	10.5638
GGGCACACAUUGAGCAGAugugug	chr16:89980254-89980515(+)$1	261	41	65	10.0082
UCCCCCAGCGUCACCCUGUUGGGG	chr19:2425720-2425989(-)$1	269	50	74	11.8789
CCACCCGGGUAUAGACACCUGGGA	chr19:2425983-2426256(-)$1	273	211	235	12.8988
gagccgggcgggggcgcggccggU	chr1:2126017-2126311(-)$1	294	195	219	13.4193
gccccggggccggcggugccgggg	chr17:7154514-7154776(-)$1	262	129	153	8.0381
CCGGCGAGCUAACCCGAGCCAGCC	chr11:64014144-64014445(-)$1	301	209	233	10.9628
cugggcggucgggcgggggcgccc	chr1:1284352-1284629(-)$1	277	30	54	12.2006
UUCUUGGAGGCGACAACCCCCGGG	chr2:216300520-216300801(-)$1	281	155	179	12.2006
AAGGGCCAGUGAGGAGAUGCCCAU	chr22:50018090-50018335(-)$1	245	189	213	10.6847
GCCGCGGCUCUCGCCCGAGCCGUG	chr16:89556637-89556892(-)$1	255	28	52	13.0217

#DB
((((((((((.....)))))))))	chr9:79009073-79009363(-)$1	1	34	58	9.8579
..(((((((.(.....).))))))	chr3:128211703-128211981(+)$1	1	131	155	9.4881
(((((((((...)))))))))(((	chr17:79879790-79880035(-)$1	1	34	58	7.8477
((((.(((((......))).)).)	chr19:2270267-2270511(+)$1	1	185	209	11.1571
.(((((((.(.........).)))	chr11:770339-770639(-)$1	1	141	165	8.1909
(.((((((((......))))))))	chr8:142441405-142441667(+)$1	1	37	61	12.4753
.(((((.(((......))).))).	chr3:133465149-133465428(+)$1	1	29	53	11.6961
((((((((.(......).))))))	chr16:89367078-89367334(-)$1	1	117	141	13.8208
(((((((((.........))))))	chr20:34252567-34252897(-)$1	1	226	250	9.1592
((.(.(((((......)))))).)	chr17:7477031-7477316(+)$1	1	64	88	11.0130
((((.(((((......))))).))	chr1:228675175-228675445(+)$1	1	134	158	10.4239
((((.(((((......)))))...	chr11:111896272-111896536(+)$1	1	49	73	10.0547
..(((.((((......))))..))	chr10:105727017-105727340(+)$1	1	166	190	11.1047
((((((.(((......))).))))	chr20:361800-362077(+)$1	1	28	52	11.0199
))))))((((......))))((((	chr7:156931672-156931985(+)$1	1	149	173	10.8708
...(((((((...))))))).)))	chr17:38153988-38154257(+)$1	1	119	143	8.3299
.((((.((((......))))))))	chr4:74283705-74283943(+)$1	1	186	210	10.1069
.)))(((((((......)))))))	chr9:116822419-116822650(-)$1	1	101	125	11.1470
((.((.((.(......).)).)).	chr1:32403758-32404012(-)$1	1	186	210	9.7940
(((((((.((......)).)))))	chr19:18530345-18530622(+)$1	1	125	149	12.2006
(((((((((......)))))))))	chr5:179247988-179248234(+)$1	1	82	106	12.7158
((((.(((((......))))).))	chr19:18433727-18433995(-)$1	1	150	174	10.7610
..(((((((((.....))))))))	chr9:140175279-140175523(+)$1	1	213	237	10.2347
(.((.(((((......))))).))	chr12:123998038-123998279(-)$1	1	118	142	10.9487
(.((((..((......)).)))).	chr16:89043056-89043321(-)$1	1	43	67	10.9822
((((((((((......)).)))))	chr19:2151268-2151556(-)$1	1	223	247	10.5351
(..(((((((......))))))).	chr3:133476588-133476891(+)$1	1	204	228	12.9027
.(((((((((......))))))))	chr2:10588154-10588409(-)$1	1	69	93	14.0788
...(((.(((......))).))).	chr19:4038174-4038426(+)$1	1	17	41	12.3631
((((..((((......)))).)))	chr3:186330821-186331092(+)$1	1	103	127	10.3394
((.((((.((......)))))).)	chr3:133474135-133474436(+)$1	1	115	139	10.9153
..((((((((......))))))))	chr16:29822005-29822249(+)$1	1	92	116	11.1491
)..(((((((......)))))))(	chr1:2125381-2125676(-)$1	1	116	140	10.7688
(((((..(((......)))..)))	chr11:64014049-64014310(-)$1	1	74	98	10.9628
(((..(((((......)))))..)	chr12:132402733-132403010(+)$1	1	11	35	10.5638
(.(((((((((.....))))))))	chr16:89980254-89980515(+)$1	1	41	65	10.0082
((((((((((......))))))))	chr19:2425720-2425989(-)$1	1	50	74	11.8789
(..(((((((......))))))).	chr19:2425983-2426256(-)$1	1	211	235	12.8988
(((((((.((......)).)))))	chr1:2126017-2126311(-)$1	1	195	219	13.4193
(((((((.(((...))).))))))	chr17:7154514-7154776(-)$1	1	129	153	8.0381
(((((..(((......)))..)))	chr11:64014144-64014445(-)$1	1	209	233	10.9628
(((((((.((......)).)))))	chr1:1284352-1284629(-)$1	1	30	54	12.2006
(((((((.((......)).)))))	chr2:216300520-216300801(-)$1	1	155	179	12.2006
(.((((..((......)))))).)	chr22:50018090-50018335(-)$1	1	189	213	10.6847
.(((((((((......))))))))	chr16:89556637-89556892(-)$1	1	28	52	13.0217

#PSSM
i : 0.11	c : 0.11	b : 0.11	f : 0.11	[ : 0.08	d : 0.08	h : 0.08	" : 0.06	e : 0.06	! : 0.04	= : 0.02	g : 0.02	] : 0.02	) : 0.02	: : 0.02	
i : 0.15	[ : 0.11	d : 0.08	! : 0.08	f : 0.08	h : 0.08	" : 0.06	c : 0.06	b : 0.06	e : 0.06	g : 0.04	= : 0.02	) : 0.02	: : 0.02	
i : 0.20	h : 0.15	d : 0.11	f : 0.08	g : 0.06	c : 0.06	b : 0.06	[ : 0.06	" : 0.04	e : 0.04	! : 0.04	= : 0.02	: : 0.02	
i : 0.20	g : 0.15	h : 0.15	d : 0.13	c : 0.11	f : 0.08	b : 0.06	= : 0.02	a : 0.02	e : 0.02	! : 0.02	
i : 0.20	g : 0.15	h : 0.15	[ : 0.13	f : 0.08	d : 0.08	c : 0.06	! : 0.04	= : 0.02	b : 0.02	e : 0.02	
i : 0.20	g : 0.15	h : 0.15	e : 0.15	[ : 0.06	d : 0.06	! : 0.06	c : 0.04	f : 0.04	= : 0.02	b : 0.02	
i : 0.20	g : 0.15	h : 0.15	e : 0.15	d : 0.11	! : 0.08	[ : 0.06	b : 0.04	= : 0.02	
i : 0.17	g : 0.15	e : 0.15	c : 0.13	[ : 0.13	d : 0.08	h : 0.06	! : 0.04	= : 0.02	b : 0.02	
b : 0.17	i : 0.15	c : 0.15	g : 0.13	e : 0.13	d : 0.08	[ : 0.06	h : 0.06	= : 0.02	
b : 0.17	c : 0.15	e : 0.13	g : 0.11	d : 0.08	i : 0.08	a : 0.06	h : 0.06	= : 0.02	[ : 0.02	l : 0.02	r : 0.02	o : 0.02	
o : 0.77	l : 0.04	r : 0.04	i : 0.04	n : 0.02	a : 0.02	g : 0.02	c : 0.02	
o : 0.80	n : 0.08	l : 0.06	r : 0.04	
o : 0.80	n : 0.08	r : 0.04	l : 0.04	i : 0.02	
o : 0.80	n : 0.08	r : 0.04	i : 0.02	g : 0.02	l : 0.02	
o : 0.80	n : 0.08	r : 0.04	i : 0.02	g : 0.02	c : 0.02	
o : 0.77	n : 0.06	i : 0.04	r : 0.04	= : 0.02	g : 0.02	c : 0.02	
b : 0.17	c : 0.15	i : 0.13	e : 0.13	d : 0.08	g : 0.08	a : 0.06	h : 0.06	r : 0.04	= : 0.02	o : 0.02	
b : 0.17	i : 0.13	c : 0.13	e : 0.13	g : 0.11	] : 0.08	d : 0.08	h : 0.06	r : 0.04	= : 0.02	
i : 0.17	g : 0.13	c : 0.13	e : 0.13	d : 0.13	] : 0.13	h : 0.08	= : 0.02	r : 0.02	b : 0.02	
i : 0.20	h : 0.15	e : 0.15	d : 0.15	g : 0.13	] : 0.08	2 : 0.04	= : 0.02	a : 0.02	b : 0.02	
i : 0.22	h : 0.15	e : 0.15	g : 0.11	] : 0.08	d : 0.08	2 : 0.06	c : 0.04	= : 0.02	b : 0.02	f : 0.02	
i : 0.20	g : 0.15	h : 0.15	d : 0.11	] : 0.06	f : 0.06	e : 0.04	b : 0.04	c : 0.04	2 : 0.04	= : 0.02	a : 0.02	0 : 0.02	
i : 0.20	g : 0.15	h : 0.15	] : 0.08	d : 0.08	c : 0.06	b : 0.06	f : 0.06	e : 0.04	= : 0.02	0 : 0.02	2 : 0.02	
i : 0.20	h : 0.15	g : 0.08	e : 0.08	b : 0.08	c : 0.06	2 : 0.06	f : 0.06	d : 0.06	] : 0.06	= : 0.02	0 : 0.02	

#score	495.29566521496207
#seq	45
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_CDS_m3_run2.txt

#BEAR
###bb[bbqqqqqqqqbb]bb44	chr12:123042046-123042327(+)$1	281	94	117	14.9490
iiiiiiiiqqqqqqqqiiiiiii	chr11:65831083-65831300(+)$1	217	140	163	15.3980
!!bb[cccqqqqqqqqcccbb33	chr11:68660257-68660538(-)$1	281	20	43	15.8372
++ffffffqqqqqqqqffffff>	chr7:132481175-132481438(-)$1	263	117	140	13.2288
cc"""cccqqqqqqqqccc333c	chr6:27860464-27860740(-)$1	276	39	62	16.5055
f"""ddddqqqqqqqqdddd22f	chr1:145456546-145456795(-)$1	249	73	96	15.1907
"""eeeeeqqqqqqqqeeeee]c	chr17:45741462-45741710(+)$1	248	72	95	14.9186
!!ffffffqqqqqqqqffffff>	chr6:44219374-44219578(+)$1	204	10	33	14.6827
fffff[bbqqqqqqqqbb]ffff	chr1:179966016-179966270(+)$1	254	175	198	14.3244
!!ccc[bbqqqqqqqqbbccc22	chr11:18420970-18421196(+)$1	226	95	118	15.7340
ffff!!bbqqqqqqqqbb]ffff	chr8:95539370-95539695(-)$1	325	105	128	14.5936
dddd!!bbqqqqqqqqbbdddd2	chr5:133316475-133316733(-)$1	258	142	165	14.5315
!!a[ddddqqqqqqqqdddda]c	chr18:9516975-9517241(+)$1	266	220	243	15.8139
ii[ddddaqqqqqqqqa]dddd]	chr19:11558316-11558533(+)$1	217	156	179	14.9051
ddd[ddddqqqqqqqqdddd22d	chr6:34386060-34386301(-)$1	241	86	109	14.7341
:gggggggqqqqqqqqggggggg	chr1:32502478-32502740(+)$1	262	14	37	14.5056
hhhhddddqqqqqqqqdddd]hh	chr9:132594073-132594349(-)$1	276	79	102	13.8327
c"""ddddqqqqqqqqdddd333	chr12:112846122-112846444(-)$1	322	183	206	16.1839
dd[ccc[aqqqqqqqqa22ccc]	chr6:31785187-31785541(+)$1	354	120	143	14.8955
bccc!!bbqqqqqqqqbb22ccc	chr6:44218150-44218358(+)$1	208	104	127	15.0578
((ffffffqqqqqqqqffffff3	chr5:33459699-33459993(+)$1	294	203	226	13.5171
ddd!!cccqqqqqqqqccc22dd	chr11:65829062-65829302(+)$1	240	182	205	15.3259
eeee[cccqqqqqqqqccc22ee	chr1:8926237-8926542(-)$1	305	77	100	15.0831
dddd[cccqqqqqqqqccc333d	chrX:64737768-64738086(-)$1	318	283	306	15.7986
a[ccc!!aqqqqqqqqa22ccc]	chr17:42288313-42288621(-)$1	308	183	206	15.3460
cc[bb!!aqqqqqqqqa22bb]c	chrX:39921982-39922293(-)$1	311	158	181	14.1627
========qqqqqqqq=======	chr20:47688727-47689015(+)$1	288	76	99	15.9991
c[ccc[bbqqqqqqqqbb]ccc3	chr1:154142804-154143034(-)$1	230	194	217	15.6507
:gggggggqqqqqqqqggggggg	chr15:60646252-60646515(-)$1	263	55	78	14.5056
eeee[cccqqqqqqqqccc333e	chr15:41650335-41650554(+)$1	219	86	109	15.8440
a:ccccccqqqqqqqqccc]ccc	chr12:132240932-132241226(+)$1	294	152	175	14.8762
""ffffffqqqqqqqqffffff]	chr4:76580241-76580524(-)$1	283	68	91	14.8586
!!ffffffqqqqqqqqffffffh	chr16:84797591-84797960(+)$1	369	211	234	14.6218
======[aqqqqqqqqa]=====	chr1:52256205-52256421(-)$1	216	90	113	15.8476
!bb[ddddqqqqqqqqdddd]bb	chr1:151239548-151239802(+)$1	254	121	144	14.4708
ddd!!cccqqqqqqqqccc]ddd	chr9:35724468-35724743(-)$1	275	228	251	15.2723
ffccccccqqqqqqqqccc22cc	chr10:7840852-7841175(+)$1	323	241	264	15.2610
g[bb[cccqqqqqqqqcccbb]g	chr2:84652438-84652810(-)$1	372	38	61	15.1591
!!bbddddqqqqqqqqdddd]bb	chr19:19603355-19603622(+)$1	267	149	172	14.6654
:gggggggqqqqqqqqggggggg	chr9:35057309-35057628(-)$1	319	36	59	14.5056
ddd[ddddqqqqqqqqdddd]dd	chr1:180047566-180047850(+)$1	284	235	258	14.6997
""ccc[bbqqqqqqqqbb]ccc3	chr19:39328939-39329201(-)$1	262	109	132	15.9336
=="""cccqqqqqqqqccc====	chr2:159519451-159519701(+)$1	250	79	102	16.3400
d[ddddbbqqqqqqqqbb22ddd	chr1:173456773-173457084(+)$1	311	119	142	14.3152
dd!!ddddqqqqqqqqdddd22d	chr19:46190699-46190950(-)$1	251	24	47	14.9991
ee!!ddddqqqqqqqqddddeee	chr11:5289524-5289803(-)$1	279	253	276	14.7677
!!bb!!bbqqqqqqqqbb22bb2	chr11:62299864-62300098(-)$1	234	95	118	14.7738
$$$$ddddqqqqqqqqdddd333	chrX:122801916-122802164(-)$1	248	50	73	15.5669
ccc[ddddqqqqqqqqddddccc	chr12:6690355-6690600(-)$1	245	106	129	15.1572
i$$$$$bbqqqqqqqqbb4444i	chr11:10823526-10823821(-)$1	295	178	201	14.8137
$$ffffffqqqqqqqqffffff3	chr1:35652707-35652947(-)$1	240	188	211	14.6051
!eeeee[aqqqqqqqqa]eeeee	chr17:72205279-72205549(+)$1	270	167	190	14.4209
a!!eeeeeqqqqqqqqeeeee]a	chr19:13050771-13051060(+)$1	289	43	66	14.8024
eee[ddddqqqqqqqqdddd]ee	chr2:136700850-136701082(-)$1	232	33	56	14.7271
#gggggggqqqqqqqqggggggg	chr2:99995424-99995660(+)$1	236	114	137	15.4631
b####cccqqqqqqqqccc4444	chr17:27003258-27003509(+)$1	251	130	153	16.2573
========qqqqqqqq=======	chr19:10270607-10270840(-)$1	233	88	111	15.9991
:gggggggqqqqqqqqggggggg	chr4:56471409-56471616(-)$1	207	174	197	14.5056
bccc!!bbqqqqqqqqbb22ccc	chr6:44218194-44218435(+)$1	241	60	83	15.0578
bb[a[cccqqqqqqqqccc]a]b	chr1:156713850-156714156(-)$1	306	17	40	15.3707
[gggggggqqqqqqqqggggggg	chrX:119293162-119293405(+)$1	243	204	227	15.4045
:cccddddqqqqqqqqdddd333	chr7:56120017-56120279(+)$1	262	1	24	14.9625
[dddd[bbqqqqqqqqbb]dddd	chr11:812659-812892(+)$1	233	48	71	14.5456
eee!!cccqqqqqqqqccc4444	chr1:43629935-43630264(-)$1	329	190	213	16.0050
""ffffffqqqqqqqqffffffe	chr9:130942677-130942904(-)$1	227	33	56	14.6752
dddd[cccqqqqqqqqccc]ddd	chr1:26227455-26227663(-)$1	208	67	90	14.9578
###eeeeeqqqqqqqqeeeee33	chr11:812459-812673(+)$1	214	168	191	15.1519

#otherMatches

#Seq PSSM
AAACAGGAUGAUGAAUUUGUGGU	chr12:123042046-123042327(+)$1	281	94	117	14.9490
GAGGGGAGGACCUUCACUUCCCU	chr11:65831083-65831300(+)$1	217	140	163	15.3980
AAGGCAUUUGAAAAAUAAUCCAA	chr11:68660257-68660538(-)$1	281	20	43	15.8372
CAGUCUGUGCUGAUCUGCAGGCC	chr7:132481175-132481438(-)$1	263	117	140	13.2288
AGACCCGCAUCAUCCCGCGCCAC	chr6:27860464-27860740(-)$1	276	39	62	16.5055
AAACUGAUUACAUCAUGUCAUAU	chr1:145456546-145456795(-)$1	249	73	96	15.1907
AAGCAAUGAAAAGUGACAUUGAU	chr17:45741462-45741710(+)$1	248	72	95	14.9186
UUAGUAAUAACAAUAAAUUAUUC	chr6:44219374-44219578(+)$1	204	10	33	14.6827
UGGCCGGGGCCAGAAGCUGGGUC	chr1:179966016-179966270(+)$1	254	175	198	14.3244
UUAGAACACCAAAGAUUGUCUCU	chr11:18420970-18421196(+)$1	226	95	118	15.7340
GGAUGAUGGUUAUGAACAAAUUU	chr8:95539370-95539695(-)$1	325	105	128	14.5936
GCGACAUGGAUUUCGACAUUGCU	chr5:133316475-133316733(-)$1	258	142	165	14.5315
AGGACCAUGAUGUAUGAUGGCAU	chr18:9516975-9517241(+)$1	266	220	243	15.8139
GGAAGGGCUACUCACUGACCCUG	chr19:11558316-11558533(+)$1	217	156	179	14.9051
GUUUCACUUUCUAGCUGGUGCCG	chr6:34386060-34386301(-)$1	241	86	109	14.7341
UGUAUCUUUCGUUCCCAGGAUAU	chr1:32502478-32502740(+)$1	262	14	37	14.5056
AUUGUUCUCUCCCUCCAGGAUCA	chr9:132594073-132594349(-)$1	276	79	102	13.8327
CCAUGUACAAGAGGAAGUACUCA	chr12:112846122-112846444(-)$1	322	183	206	16.1839
UUGAGCACAAGAGGAAGGAGCUG	chr6:31785187-31785541(+)$1	354	120	143	14.8955
CCCUGAUGACAUCACCCAAGAGG	chr6:44218150-44218358(+)$1	208	104	127	15.0578
UGUUCUCCUUUGAGGUGGAGAAG	chr5:33459699-33459993(+)$1	294	203	226	13.5171
CAGUGAGUGUCAGUUAGCUGUCU	chr11:65829062-65829302(+)$1	240	182	205	15.3259
AGCCAUGCGCAUUGGAGCAGAGG	chr1:8926237-8926542(-)$1	305	77	100	15.0831
CUACCCUAGGAAGAGAUGGAAAG	chrX:64737768-64738086(-)$1	318	283	306	15.7986
CCUCCAAGAAGCCAGCCCAGGAA	chr17:42288313-42288621(-)$1	308	183	206	15.3460
UGCUGCAGAAAUACACCGACAAC	chrX:39921982-39922293(-)$1	311	158	181	14.1627
UUGUUUUCUUUUAUGUGAGGAUG	chr20:47688727-47689015(+)$1	288	76	99	15.9991
UAUAGAGGAAGACUGCCCAUUAA	chr1:154142804-154143034(-)$1	230	194	217	15.6507
AAAAUACACAAAGAAAUGUAUUU	chr15:60646252-60646515(-)$1	263	55	78	14.5056
AUUUUGAAGAACACAAUUCCAUG	chr15:41650335-41650554(+)$1	219	86	109	15.8440
AUGGCGCGCCUGAAGACGCAGCC	chr12:132240932-132241226(+)$1	294	152	175	14.8762
AAAGUGAACUAAAUAUUUUAUUG	chr4:76580241-76580524(-)$1	283	68	91	14.8586
CUUCCGUCACCCGCCAGGCGGAU	chr16:84797591-84797960(+)$1	369	211	234	14.6218
GUGGGAACAGGUCACAGCUCUCA	chr1:52256205-52256421(-)$1	216	90	113	15.8476
AUGCAGGACCCCGAGUUCCUUCA	chr1:151239548-151239802(+)$1	254	121	144	14.4708
Cuucagcaucugcuucugccagg	chr9:35724468-35724743(-)$1	275	228	251	15.2723
CAGCAGCUGGGAAAGAAGUUAUG	chr10:7840852-7841175(+)$1	323	241	264	15.2610
AUUGACUUCUUCAUUAGAGCAUU	chr2:84652438-84652810(-)$1	372	38	61	15.1591
AAGCCACCGCCCAGAAGGUGCGU	chr19:19603355-19603622(+)$1	267	149	172	14.6654
AGGCCUGGGAUGAAAUCCAGGCU	chr9:35057309-35057628(-)$1	319	36	59	14.5056
GUAAACAUGUAAGUUAAUGUAUA	chr1:180047566-180047850(+)$1	284	235	258	14.6997
ACGUGCUGCACUUCUUCAACGCC	chr19:39328939-39329201(-)$1	262	109	132	15.9336
CAAAGACUCUGAGCCAAGUUGCU	chr2:159519451-159519701(+)$1	250	79	102	16.3400
UCCUUCCAACCAUCCCUGAAGAA	chr1:173456773-173457084(+)$1	311	119	142	14.3152
GCAAGGGCAAGAAGAAGUCCAAG	chr19:46190699-46190950(-)$1	251	24	47	14.9991
UUACUCUUGUGUUAAAAGGAAAA	chr11:5289524-5289803(-)$1	279	253	276	14.7677
CCAAGAUGAAAAUGCCCACGUUC	chr11:62299864-62300098(-)$1	234	95	118	14.7738
GAAGCUAAGCAAAUUGUUAGAAA	chrX:122801916-122802164(-)$1	248	50	73	15.5669
AGGAGGUUAAAUCUACAGCCCCU	chr12:6690355-6690600(-)$1	245	106	129	15.1572
ACACAAUCGCAGUUUGGAGAGAU	chr11:10823526-10823821(-)$1	295	178	201	14.8137
CCUGGUGGAGUUGUAACCACUAU	chr1:35652707-35652947(-)$1	240	188	211	14.6051
CGGUGAGUGAGCCUGAAGUCACU	chr17:72205279-72205549(+)$1	270	167	190	14.4209
CUCGAGAUGAUGGGUAGUCUCUG	chr19:13050771-13051060(+)$1	289	43	66	14.8024
AUCAACAAAGAGAGCAUUGUGGA	chr2:136700850-136701082(-)$1	232	33	56	14.7271
AUCUGCGUACUUGGGCAUGUGGA	chr2:99995424-99995660(+)$1	236	114	137	15.4631
AGCCACCUCACAGAUCAGGACAA	chr17:27003258-27003509(+)$1	251	130	153	16.2573
UUUUUUCCCCCAGAACGGAGAAA	chr19:10270607-10270840(-)$1	233	88	111	15.9991
CGUAUGUAAUACAAACUGCAUGC	chr4:56471409-56471616(-)$1	207	174	197	14.5056
CCCUGAUGACAUCACCCAAGAGG	chr6:44218194-44218435(+)$1	241	60	83	15.0578
CCUCCCAGAAAAAGAGCUGUGUG	chr1:156713850-156714156(-)$1	306	17	40	15.3707
AGGGAGGCGGCGUUUGGCUUUCC	chrX:119293162-119293405(+)$1	243	204	227	15.4045
UGGCUCCCUAAAAUCUGGGAAAA	chr7:56120017-56120279(+)$1	262	1	24	14.9625
GACUGGCCUGGCACUUGGGCAGU	chr11:812659-812892(+)$1	233	48	71	14.5456
AAGACUCGCAAUUUCACGACACA	chr1:43629935-43630264(-)$1	329	190	213	16.0050
CCAUCUCUUGGAGGUCAGAGAUG	chr9:130942677-130942904(-)$1	227	33	56	14.6752
CUUACCCUUCCUUUACAGGAUAA	chr1:26227455-26227663(-)$1	208	67	90	14.9578
CUGCAGGUAAGUGGUGGCCUGGU	chr11:812459-812673(+)$1	214	168	191	15.1519

#DB
...((.((........)).))..	chr12:123042046-123042327(+)$1	1	94	117	14.9490
((((((((........)))))))	chr11:65831083-65831300(+)$1	1	140	163	15.3980
..((.(((........)))))..	chr11:68660257-68660538(-)$1	1	20	43	15.8372
..((((((........)))))).	chr7:132481175-132481438(-)$1	1	117	140	13.2288
((...(((........)))...)	chr6:27860464-27860740(-)$1	1	39	62	16.5055
(...((((........))))..)	chr1:145456546-145456795(-)$1	1	73	96	15.1907
...(((((........))))).)	chr17:45741462-45741710(+)$1	1	72	95	14.9186
..((((((........)))))).	chr6:44219374-44219578(+)$1	1	10	33	14.6827
(((((.((........)).))))	chr1:179966016-179966270(+)$1	1	175	198	14.3244
..(((.((........)))))..	chr11:18420970-18421196(+)$1	1	95	118	15.7340
((((..((........)).))))	chr8:95539370-95539695(-)$1	1	105	128	14.5936
((((..((........)))))).	chr5:133316475-133316733(-)$1	1	142	165	14.5315
..(.((((........))))).)	chr18:9516975-9517241(+)$1	1	220	243	15.8139
((.(((((........).)))).	chr19:11558316-11558533(+)$1	1	156	179	14.9051
(((.((((........))))..)	chr6:34386060-34386301(-)$1	1	86	109	14.7341
.(((((((........)))))))	chr1:32502478-32502740(+)$1	1	14	37	14.5056
((((((((........)))).))	chr9:132594073-132594349(-)$1	1	79	102	13.8327
(...((((........))))...	chr12:112846122-112846444(-)$1	1	183	206	16.1839
((.(((.(........)..))).	chr6:31785187-31785541(+)$1	1	120	143	14.8955
((((..((........))..)))	chr6:44218150-44218358(+)$1	1	104	127	15.0578
..((((((........)))))).	chr5:33459699-33459993(+)$1	1	203	226	13.5171
(((..(((........)))..))	chr11:65829062-65829302(+)$1	1	182	205	15.3259
((((.(((........)))..))	chr1:8926237-8926542(-)$1	1	77	100	15.0831
((((.(((........)))...)	chrX:64737768-64738086(-)$1	1	283	306	15.7986
(.(((..(........)..))).	chr17:42288313-42288621(-)$1	1	183	206	15.3460
((.((..(........)..)).)	chrX:39921982-39922293(-)$1	1	158	181	14.1627
((((((((........)))))))	chr20:47688727-47689015(+)$1	1	76	99	15.9991
(.(((.((........)).))).	chr1:154142804-154143034(-)$1	1	194	217	15.6507
.(((((((........)))))))	chr15:60646252-60646515(-)$1	1	55	78	14.5056
((((.(((........)))...)	chr15:41650335-41650554(+)$1	1	86	109	15.8440
).((((((........))).)))	chr12:132240932-132241226(+)$1	1	152	175	14.8762
..((((((........)))))).	chr4:76580241-76580524(-)$1	1	68	91	14.8586
..((((((........)))))))	chr16:84797591-84797960(+)$1	1	211	234	14.6218
((((((.(........).)))))	chr1:52256205-52256421(-)$1	1	90	113	15.8476
.((.((((........)))).))	chr1:151239548-151239802(+)$1	1	121	144	14.4708
(((..(((........))).)))	chr9:35724468-35724743(-)$1	1	228	251	15.2723
((((((((........)))..))	chr10:7840852-7841175(+)$1	1	241	264	15.2610
(.((.(((........))))).)	chr2:84652438-84652810(-)$1	1	38	61	15.1591
..((((((........)))).))	chr19:19603355-19603622(+)$1	1	149	172	14.6654
.(((((((........)))))))	chr9:35057309-35057628(-)$1	1	36	59	14.5056
(((.((((........)))).))	chr1:180047566-180047850(+)$1	1	235	258	14.6997
..(((.((........)).))).	chr19:39328939-39329201(-)$1	1	109	132	15.9336
((...(((........)))))))	chr2:159519451-159519701(+)$1	1	79	102	16.3400
(.((((((........))..)))	chr1:173456773-173457084(+)$1	1	119	142	14.3152
((..((((........))))..)	chr19:46190699-46190950(-)$1	1	24	47	14.9991
((..((((........)))))))	chr11:5289524-5289803(-)$1	1	253	276	14.7677
..((..((........))..)).	chr11:62299864-62300098(-)$1	1	95	118	14.7738
....((((........))))...	chrX:122801916-122802164(-)$1	1	50	73	15.5669
(((.((((........)))))))	chr12:6690355-6690600(-)$1	1	106	129	15.1572
(.....((........))....)	chr11:10823526-10823821(-)$1	1	178	201	14.8137
..((((((........)))))).	chr1:35652707-35652947(-)$1	1	188	211	14.6051
.(((((.(........).)))))	chr17:72205279-72205549(+)$1	1	167	190	14.4209
(..(((((........))))).)	chr19:13050771-13051060(+)$1	1	43	66	14.8024
(((.((((........)))).))	chr2:136700850-136701082(-)$1	1	33	56	14.7271
.(((((((........)))))))	chr2:99995424-99995660(+)$1	1	114	137	15.4631
(....(((........)))....	chr17:27003258-27003509(+)$1	1	130	153	16.2573
((((((((........)))))))	chr19:10270607-10270840(-)$1	1	88	111	15.9991
.(((((((........)))))))	chr4:56471409-56471616(-)$1	1	174	197	14.5056
((((..((........))..)))	chr6:44218194-44218435(+)$1	1	60	83	15.0578
((.(.(((........))).).)	chr1:156713850-156714156(-)$1	1	17	40	15.3707
.(((((((........)))))))	chrX:119293162-119293405(+)$1	1	204	227	15.4045
.(((((((........))))...	chr7:56120017-56120279(+)$1	1	1	24	14.9625
.((((.((........)).))))	chr11:812659-812892(+)$1	1	48	71	14.5456
(((..(((........)))....	chr1:43629935-43630264(-)$1	1	190	213	16.0050
..((((((........)))))))	chr9:130942677-130942904(-)$1	1	33	56	14.6752
((((.(((........))).)))	chr1:26227455-26227663(-)$1	1	67	90	14.9578
...(((((........)))))..	chr11:812459-812673(+)$1	1	168	191	15.1519

#PSSM
d : 0.14	! : 0.13	c : 0.07	: : 0.07	e : 0.07	f : 0.05	" : 0.05	b : 0.05	= : 0.05	# : 0.04	i : 0.04	a : 0.04	$ : 0.02	[ : 0.02	+ : 0.01	h : 0.01	( : 0.01	g : 0.01	
d : 0.14	! : 0.11	c : 0.08	" : 0.08	g : 0.08	e : 0.08	[ : 0.05	= : 0.05	# : 0.04	f : 0.04	$ : 0.04	i : 0.02	b : 0.02	+ : 0.01	h : 0.01	( : 0.01	: : 0.01	
c : 0.14	f : 0.13	d : 0.13	g : 0.08	b : 0.07	" : 0.07	e : 0.07	[ : 0.05	# : 0.04	= : 0.04	! : 0.04	$ : 0.02	i : 0.01	a : 0.01	h : 0.01	
c : 0.14	f : 0.13	b : 0.08	e : 0.08	d : 0.08	[ : 0.08	g : 0.08	! : 0.07	" : 0.05	= : 0.04	$ : 0.02	i : 0.01	h : 0.01	# : 0.01	a : 0.01	
d : 0.25	f : 0.11	! : 0.11	[ : 0.10	c : 0.10	g : 0.08	e : 0.05	= : 0.04	b : 0.02	" : 0.02	i : 0.01	$ : 0.01	# : 0.01	
c : 0.23	d : 0.23	f : 0.10	! : 0.10	[ : 0.08	g : 0.08	e : 0.05	= : 0.04	i : 0.01	$ : 0.01	
c : 0.22	d : 0.22	b : 0.19	f : 0.10	g : 0.08	e : 0.04	[ : 0.04	! : 0.02	= : 0.02	i : 0.01	
c : 0.22	d : 0.20	b : 0.19	f : 0.10	a : 0.08	g : 0.08	e : 0.04	= : 0.02	i : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.22	d : 0.20	b : 0.19	f : 0.10	a : 0.08	g : 0.08	e : 0.04	= : 0.02	i : 0.01	
c : 0.22	d : 0.20	b : 0.19	f : 0.10	g : 0.08	e : 0.04	] : 0.04	2 : 0.04	= : 0.02	i : 0.01	
c : 0.23	d : 0.23	f : 0.10	2 : 0.10	] : 0.08	g : 0.08	e : 0.05	= : 0.04	i : 0.01	4 : 0.01	
d : 0.25	f : 0.13	2 : 0.10	g : 0.08	c : 0.07	b : 0.05	e : 0.05	= : 0.05	] : 0.05	3 : 0.04	4 : 0.04	i : 0.01	
f : 0.13	c : 0.13	3 : 0.08	2 : 0.08	d : 0.08	g : 0.08	b : 0.07	e : 0.07	] : 0.07	= : 0.05	4 : 0.04	a : 0.02	i : 0.01	
f : 0.13	c : 0.13	3 : 0.11	d : 0.11	] : 0.08	g : 0.08	4 : 0.05	2 : 0.05	e : 0.05	= : 0.05	b : 0.04	i : 0.01	h : 0.01	
3 : 0.13	c : 0.13	d : 0.13	g : 0.10	e : 0.08	] : 0.05	= : 0.05	4 : 0.04	f : 0.04	2 : 0.04	b : 0.04	i : 0.02	> : 0.02	h : 0.02	a : 0.01	

#score	1008.8757534771337
#seq	67
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_UTR_m1_run1.txt

#BEAR
[dddd[ccc[eeeeennnnneeeee22ccc]	chr9:127020423-127020706(+)$1	283	93	124	11.1778
h[eeeee"""eeeeennnnneeeee]eeeee	chr21:34942094-34942381(+)$1	287	13	44	10.6403
:ggggggg!!eeeeemmmmeeeeeggggggg	chr12:8025158-8025442(-)$1	284	48	79	9.5927
eee"""ddddeeeeeooooooeeeee]dddd	chr17:75450071-75450338(+)$1	267	117	148	9.9015
cc"""bb[a[eeeeeooooooeeeeea]bb3	chr17:7477028-7477309(+)$1	281	62	93	10.6818
ffffff!!bbaeeeeellleeeee]a]bb22	chr20:33872250-33872486(-)$1	236	194	225	9.2376
"""ggggggg!!cccnnnnnccc22gggggg	chr14:104163934-104164200(+)$1	266	102	133	11.5106
b[bb[ccc!!ddddooooooddddccc]bb]	chr8:134308518-134308847(-)$1	329	279	310	10.0965
iiiiiiiii[a[bboooooobb]aiiiiiii	chr20:24943988-24944271(-)$1	283	162	193	11.6217
ffff===========nnnnn===========	chr11:18425235-18425451(+)$1	216	110	141	14.3057
!!bb!!ggggggg[annnnna]ggggggg55	chr16:68331309-68331656(+)$1	347	55	86	10.3398
eeeeffffff[cccooooooccc]ffffff]	chr8:144679209-144679499(-)$1	290	209	240	10.2703
[==============nnnnn===========	chr10:102758631-102758912(+)$1	281	153	184	14.2357
ffffff==========mmmm==========C	chr1:1327646-1327926(-)$1	280	130	161	11.1220
fffccc[ccc####ccclllccc4444ccc]	chr20:62565176-62565444(+)$1	268	150	181	9.9924
9ffffffccc[ddddnnnnndddd333ccc:	chr8:144678726-144678991(-)$1	265	156	187	9.3968
ffff===========nnnnn===========	chr11:18425214-18425435(+)$1	221	131	162	14.3057
ddddggggggg[arrrrrrrrra]ggggggg	chr16:57220711-57220971(+)$1	260	141	172	9.2348
eeeee[a!!dddd[annnnna]dddda]eee	chr9:110046150-110046532(+)$1	382	85	116	10.7540
((iiiiiiiii[cccmmmmccc]iiiiiiii	chr16:28876805-28877047(+)$1	242	64	95	9.9651
eeeee"""ccc[ccclllccc]ccc333eee	chr1:11084610-11084885(+)$1	275	155	186	10.2180
ddd[a!!ccc[ddddnnnnndddd]ccc]a]	chr3:49050497-49050788(+)$1	291	201	232	11.0018
ffffgggggggbb[arrrrrrrrra]bb]gg	chr15:72521844-72522138(-)$1	294	123	154	8.5225
iiiiiiii[eeeeeooooooeeeee4444ii	chr8:134309042-134309329(-)$1	287	67	98	12.0068
ggggggg[affffffooooooffffff]a]g	chr22:41755305-41755580(+)$1	275	2	33	10.4984
fdddd"""gggggggnnnnnggggggg]ddd	chr2:20550290-20550540(-)$1	250	132	163	11.0922
eeeeea[iiiiiiiiillliiiiiiiii]a]	chr5:74161197-74161501(-)$1	304	225	256	11.7586
ggggiiiiiiiiirrrrrrrrriiiiiiiii	chr14:24908336-24908590(+)$1	254	198	229	10.7476
%%%%==========oooooo==========3	chr19:50168041-50168352(-)$1	311	91	122	11.2910
ggggg[bb[a[eeeeemmmmeeeee]a]bb]	chr14:20923410-20923668(+)$1	258	171	202	9.8073
eee[eeeee!!ddddnnnnndddd]eeeee]	chr8:12611484-12611752(-)$1	268	162	193	10.2684
dd]aggggggg[cccmmmmccc22ggggggg	chr3:32936323-32936602(+)$1	279	127	158	9.5478
GGccc[iiiiiiiiimmmmiiiiiiiii]cc	chr6:31919696-31919947(+)$1	251	163	194	10.1324
fffff!!a[a[fffffflllffffff]aa22	chr19:2270253-2270568(+)$1	315	257	288	9.1966
ffffffeeeee[cccooooooccc]eeeeeG	chr5:73924808-73925103(-)$1	295	244	275	9.9602
fffffcccgggggggmmmmggggggg22ccc	chr1:26147380-26147680(+)$1	300	96	127	9.7203
ccbb[===========mmmm===========	chr16:2581146-2581444(+)$1	298	49	80	12.0011
ccc[ggggggg[bboooooobb]ggggggg]	chr14:104152143-104152436(+)$1	293	245	276	11.5521
eeeeeeeee[eeeeennnnneeeee]eeeee	chr8:144674985-144675247(-)$1	262	78	109	10.3920
ffffa"""dddd!!ammmma22dddd333a]	chr3:49045518-49045768(+)$1	250	45	76	9.7186
bb!!a!!ccc!!eeeeellleeeee22ccc2	chr3:195796304-195796540(-)$1	236	0	31	9.7145
ffffff"""dddd[aooooooadddd22fff	chr11:64073910-64074163(+)$1	253	201	232	10.5912

#otherMatches

#Seq PSSM
gccgcgcggggcugagcgugucggcggccgg	chr9:127020423-127020706(+)$1	283	93	124	11.1778
ACCACCAUUUAGGCCCUAGUGGCCUCUGGUG	chr21:34942094-34942381(+)$1	287	13	44	10.6403
GCCGCGCCGUCCCUGCGGCCGGGGGGUGCGG	chr12:8025158-8025442(-)$1	284	48	79	9.5927
GGGUAAGCUGUGGGGGCUCCUCCCCGCCGGC	chr17:75450071-75450338(+)$1	267	117	148	9.9015
CCGGGCAACGCGAGGGGGGGGCUUCGGCUGG	chr17:7477028-7477309(+)$1	281	62	93	10.6818
UCAUGGCGGUCCGAGCUUCGUUCGAGAACAA	chr20:33872250-33872486(-)$1	236	194	225	9.2376
UGUACGGUGGGAAUCAAGGGGGUCACCACUG	chr14:104163934-104164200(+)$1	266	102	133	11.5106
CGGCCCCUUGAGCUGGCUGGAGCUAGGAGUG	chr8:134308518-134308847(-)$1	329	279	310	10.0965
AGCAGUAAGGCACUACCCAGAGAGCUUGCUG	chr20:24943988-24944271(-)$1	283	162	193	11.6217
AGGUGGUUGAGAGGUAAUAAAUCUUUCAAUU	chr11:18425235-18425451(+)$1	216	110	141	14.3057
UGCUCACUCUUAUUGGUAAGCUAUAGGAGAC	chr16:68331309-68331656(+)$1	347	55	86	10.3398
GGGGGCGCCGGGAGCACUGUCUCACGGCGCA	chr8:144679209-144679499(-)$1	290	209	240	10.2703
GCUGGUGUAGGUUUGGGCUGUAGGCUUGCAC	chr10:102758631-102758912(+)$1	281	153	184	14.2357
AGCCCUGAAGUUGCUCUUUUGAGCAGCUUUG	chr1:1327646-1327926(-)$1	280	130	161	11.1220
GGUCUGGAGGUUUGUGGAACCCAGUCCCCUG	chr20:62565176-62565444(+)$1	268	150	181	9.9924
ACCGCCUGGCAGCAGAAGAACUGUGUAGCUA	chr8:144678726-144678991(-)$1	265	156	187	9.3968
AGGUGGUUGAGAGGUAAUAAAUCUUUCAAUU	chr11:18425214-18425435(+)$1	221	131	162	14.3057
CCUCCCCGGGGAGAUUUAGAAACGCCUUGGG	chr16:57220711-57220971(+)$1	260	141	172	9.2348
GGCCUGGGCCUAGGAGCUCGUGCUAGCGGGG	chr9:110046150-110046532(+)$1	382	85	116	10.7540
ACUUGGAGUUCUGAaacuuuucugagcuucg	chr16:28876805-28877047(+)$1	242	64	95	9.9651
GUGGUAACAUUGAAUACAGUUGAAUAAAAUC	chr1:11084610-11084885(+)$1	275	155	186	10.2180
CAUGGUGGCUAUGUGUAUACCACAGGGCGUG	chr3:49050497-49050788(+)$1	291	201	232	11.0018
CGAGCUUCCUGCUGUGGGAGGGAGGGGGACA	chr15:72521844-72522138(-)$1	294	123	154	8.5225
CGCCCCGGAGCUGCAAGUGCGCGGUCACCCC	chr8:134309042-134309329(-)$1	287	67	98	12.0068
AUAUCGCUCUAUAUAAUAUUAUAUAUGUGUG	chr22:41755305-41755580(+)$1	275	2	33	10.4984
GUGCCCAACGGUCGGUGUCCCCGGCUGAGGC	chr2:20550290-20550540(-)$1	250	132	163	11.0922
CUCACUGGCUUUUCAGCGUCUGGGAAGCGGC	chr5:74161197-74161501(-)$1	304	225	256	11.7586
UCAGAUGAGAGGCAAGUCCUAAGCUUCUUAU	chr14:24908336-24908590(+)$1	254	198	229	10.7476
GGGAGGAUGGGAAGAGGAGGUUUCCUGUUUG	chr19:50168041-50168352(-)$1	311	91	122	11.2910
UCGUGGGUGAGGGGCUGAAGGGCCUAUGAUG	chr14:20923410-20923668(+)$1	258	171	202	9.8073
cggccccgggAGGCCCUGCAGGCCGCCGGGC	chr8:12611484-12611752(-)$1	268	162	193	10.2684
AGGUCUGAUCUGGUCAGGUGGCAAGGGUUGG	chr3:32936323-32936602(+)$1	279	127	158	9.5478
CACCUGUGUUCCAGAUCCUUUUGGGGCAAGG	chr6:31919696-31919947(+)$1	251	163	194	10.1324
CCGGGGAGCUGGGGGUGGCGCACUCCGACAG	chr19:2270253-2270568(+)$1	315	257	288	9.1966
UAGGGUAAGGGGAGGCUGCUUUCUGCCCUUC	chr5:73924808-73925103(-)$1	295	244	275	9.9602
UUGAUGCAGGGCUCAGAGGUGGGCCCAGUGU	chr1:26147380-26147680(+)$1	300	96	127	9.7203
CCCCACCUCCCUGGCUGGAGGGUCGGGGAGG	chr16:2581146-2581444(+)$1	298	49	80	12.0011
GAGCCCUGGGGGCCCCGCUCGGACUCCGGGU	chr14:104152143-104152436(+)$1	293	245	276	11.5521
AGGGUGGGUGGAUUUGGGAAAGGUUGGCUCA	chr8:144674985-144675247(-)$1	262	78	109	10.3920
GGGGCGGUGCCCGGGGAAGCAGGGGCUGAGA	chr3:49045518-49045768(+)$1	250	45	76	9.7186
GGUUGCCUGUCUUAGGUUUGAUCUAUAACAC	chr3:195796304-195796540(-)$1	236	0	31	9.7145
AAGCCCUCAGCAGAGAGCGAGCCUGCGUGGG	chr11:64073910-64074163(+)$1	253	201	232	10.5912

#DB
.((((.(((.(((((.....)))))..))).	chr9:127020423-127020706(+)$1	1	93	124	11.1778
(.(((((...(((((.....))))).)))))	chr21:34942094-34942381(+)$1	1	13	44	10.6403
.(((((((..(((((....))))))))))))	chr12:8025158-8025442(-)$1	1	48	79	9.5927
(((...(((((((((......))))).))))	chr17:75450071-75450338(+)$1	1	117	148	9.9015
((...((.(.(((((......)))))).)).	chr17:7477028-7477309(+)$1	1	62	93	10.6818
((((((..((((((((...))))).).))..	chr20:33872250-33872486(-)$1	1	194	225	9.2376
...(((((((..(((.....)))..))))))	chr14:104163934-104164200(+)$1	1	102	133	11.5106
(.((.(((..((((......))))))).)).	chr8:134308518-134308847(-)$1	1	279	310	10.0965
(((((((((.(.((......)).))))))))	chr20:24943988-24944271(-)$1	1	162	193	11.6217
))))(((((((((((.....)))))))))))	chr11:18425235-18425451(+)$1	1	110	141	14.3057
..((..(((((((.(.....).)))))))..	chr16:68331309-68331656(+)$1	1	55	86	10.3398
((((((((((.(((......))).)))))).	chr8:144679209-144679499(-)$1	1	209	240	10.2703
.((((((((((((((.....)))))))))))	chr10:102758631-102758912(+)$1	1	153	184	14.2357
))))))((((((((((....)))))))))))	chr1:1327646-1327926(-)$1	1	130	161	11.1220
((((((.(((....(((...)))....))).	chr20:62565176-62565444(+)$1	1	150	181	9.9924
.))))))(((.((((.....))))...))).	chr8:144678726-144678991(-)$1	1	156	187	9.3968
))))(((((((((((.....)))))))))))	chr11:18425214-18425435(+)$1	1	131	162	14.3057
))))(((((((.(.........).)))))))	chr16:57220711-57220971(+)$1	1	141	172	9.2348
(((((.(..((((.(.....).))))).)))	chr9:110046150-110046532(+)$1	1	85	116	10.7540
..(((((((((.(((....))).))))))))	chr16:28876805-28877047(+)$1	1	64	95	9.9651
(((((...(((.(((...))).)))...)))	chr1:11084610-11084885(+)$1	1	155	186	10.2180
(((.(..(((.((((.....)))).))).).	chr3:49050497-49050788(+)$1	1	201	232	11.0018
(((((((((((((.(.........).)).))	chr15:72521844-72522138(-)$1	1	123	154	8.5225
((((((((.(((((......)))))....))	chr8:134309042-134309329(-)$1	1	67	98	12.0068
(((((((.(((((((......)))))).).)	chr22:41755305-41755580(+)$1	1	2	33	10.4984
(((((...(((((((.....))))))).)))	chr2:20550290-20550540(-)$1	1	132	163	11.0922
((((((.(((((((((...))))))))).).	chr5:74161197-74161501(-)$1	1	225	256	11.7586
))))(((((((((.........)))))))))	chr14:24908336-24908590(+)$1	1	198	229	10.7476
....((((((((((......)))))))))).	chr19:50168041-50168352(-)$1	1	91	122	11.2910
(((((.((.(.(((((....))))).).)).	chr14:20923410-20923668(+)$1	1	171	202	9.8073
(((.(((((..((((.....)))).))))).	chr8:12611484-12611752(-)$1	1	162	193	10.2684
)).)(((((((.(((....)))..)))))))	chr3:32936323-32936602(+)$1	1	127	158	9.5478
(((((.(((((((((....))))))))).))	chr6:31919696-31919947(+)$1	1	163	194	10.1324
(((((..(.(.((((((...)))))).))..	chr19:2270253-2270568(+)$1	1	257	288	9.1966
))))))(((((.(((......))).))))))	chr5:73924808-73925103(-)$1	1	244	275	9.9602
(((((((((((((((....)))))))..)))	chr1:26147380-26147680(+)$1	1	96	127	9.7203
((((.(((((((((((....)))))))))))	chr16:2581146-2581444(+)$1	1	49	80	12.0011
(((.(((((((.((......)).))))))).	chr14:104152143-104152436(+)$1	1	245	276	11.5521
(((((((((.(((((.....))))).)))))	chr8:144674985-144675247(-)$1	1	78	109	10.3920
(((((...((((..(....)..))))...).	chr3:49045518-49045768(+)$1	1	45	76	9.7186
((..(..(((..(((((...)))))..))).	chr3:195796304-195796540(-)$1	1	0	31	9.7145
((((((...((((.(......)))))..)))	chr11:64073910-64074163(+)$1	1	201	232	10.5912

#PSSM
f : 0.28	e : 0.16	c : 0.07	d : 0.07	g : 0.07	[ : 0.04	b : 0.04	i : 0.04	h : 0.02	: : 0.02	" : 0.02	! : 0.02	9 : 0.02	( : 0.02	% : 0.02	G : 0.02	
f : 0.28	e : 0.16	d : 0.11	g : 0.09	c : 0.07	[ : 0.04	i : 0.04	" : 0.02	! : 0.02	= : 0.02	( : 0.02	% : 0.02	G : 0.02	b : 0.02	
f : 0.28	e : 0.19	d : 0.09	g : 0.09	b : 0.07	i : 0.07	" : 0.04	c : 0.04	= : 0.02	% : 0.02	] : 0.02	! : 0.02	
f : 0.26	e : 0.14	g : 0.11	d : 0.07	b : 0.07	i : 0.07	[ : 0.07	" : 0.04	c : 0.04	= : 0.02	% : 0.02	a : 0.02	! : 0.02	
g : 0.19	f : 0.19	e : 0.14	i : 0.09	= : 0.09	a : 0.07	d : 0.04	" : 0.04	[ : 0.04	c : 0.04	! : 0.02	
g : 0.16	f : 0.14	= : 0.11	[ : 0.09	" : 0.09	i : 0.09	! : 0.09	e : 0.07	c : 0.07	b : 0.02	a : 0.02	
g : 0.19	= : 0.14	i : 0.11	e : 0.09	! : 0.09	" : 0.09	c : 0.07	b : 0.04	f : 0.04	[ : 0.04	d : 0.02	a : 0.02	
c : 0.16	g : 0.16	i : 0.14	= : 0.14	" : 0.11	e : 0.07	[ : 0.04	! : 0.04	d : 0.02	f : 0.02	b : 0.02	a : 0.02	
g : 0.19	c : 0.14	= : 0.14	i : 0.11	! : 0.07	[ : 0.07	e : 0.07	" : 0.04	d : 0.04	a : 0.04	b : 0.02	f : 0.02	
g : 0.19	= : 0.14	c : 0.11	[ : 0.09	d : 0.09	i : 0.09	! : 0.07	f : 0.04	e : 0.04	a : 0.04	" : 0.02	b : 0.02	
e : 0.19	g : 0.16	= : 0.14	[ : 0.11	d : 0.09	i : 0.09	! : 0.07	a : 0.04	# : 0.02	c : 0.02	f : 0.02	
e : 0.21	d : 0.16	[ : 0.16	= : 0.14	g : 0.07	i : 0.07	! : 0.04	f : 0.04	c : 0.02	# : 0.02	b : 0.02	
e : 0.23	c : 0.14	d : 0.14	= : 0.14	b : 0.07	g : 0.07	i : 0.07	f : 0.04	# : 0.02	a : 0.02	! : 0.02	
e : 0.23	c : 0.14	= : 0.14	d : 0.09	[ : 0.09	b : 0.04	r : 0.04	f : 0.04	g : 0.04	i : 0.04	# : 0.02	! : 0.02	
e : 0.21	c : 0.14	o : 0.14	= : 0.11	a : 0.11	d : 0.07	r : 0.04	f : 0.04	g : 0.04	i : 0.04	
n : 0.30	o : 0.26	m : 0.14	e : 0.07	r : 0.07	= : 0.04	c : 0.02	l : 0.02	i : 0.02	f : 0.02	
n : 0.30	o : 0.26	m : 0.21	l : 0.07	r : 0.07	c : 0.02	f : 0.02	e : 0.02	
n : 0.30	o : 0.26	m : 0.21	l : 0.14	r : 0.07	
n : 0.30	o : 0.26	m : 0.21	l : 0.11	r : 0.07	c : 0.02	
n : 0.30	o : 0.26	m : 0.07	l : 0.07	r : 0.07	c : 0.07	e : 0.04	i : 0.04	g : 0.02	a : 0.02	
e : 0.19	c : 0.14	= : 0.14	o : 0.11	d : 0.09	r : 0.07	b : 0.04	a : 0.04	g : 0.04	i : 0.04	f : 0.02	2 : 0.02	
e : 0.23	c : 0.14	= : 0.14	d : 0.09	] : 0.07	r : 0.07	b : 0.04	f : 0.04	g : 0.04	i : 0.04	2 : 0.02	a : 0.02	
e : 0.23	d : 0.16	= : 0.14	c : 0.11	] : 0.07	g : 0.07	i : 0.07	f : 0.04	a : 0.02	r : 0.02	2 : 0.02	
e : 0.23	d : 0.16	= : 0.14	g : 0.09	i : 0.09	2 : 0.04	] : 0.04	c : 0.04	f : 0.04	a : 0.02	4 : 0.02	r : 0.02	
e : 0.19	g : 0.16	= : 0.14	i : 0.11	] : 0.09	f : 0.07	d : 0.07	c : 0.04	2 : 0.02	4 : 0.02	3 : 0.02	a : 0.02	
g : 0.19	= : 0.14	i : 0.11	] : 0.09	e : 0.09	f : 0.07	d : 0.07	2 : 0.04	c : 0.04	4 : 0.04	3 : 0.04	a : 0.02	
g : 0.16	= : 0.14	i : 0.11	2 : 0.09	e : 0.09	] : 0.07	a : 0.07	3 : 0.07	c : 0.04	f : 0.04	4 : 0.04	b : 0.02	
g : 0.14	] : 0.14	= : 0.14	c : 0.11	i : 0.11	e : 0.09	b : 0.04	3 : 0.04	2 : 0.04	d : 0.02	f : 0.02	4 : 0.02	a : 0.02	
e : 0.14	g : 0.14	= : 0.14	c : 0.11	b : 0.09	] : 0.09	i : 0.07	d : 0.04	f : 0.04	a : 0.04	4 : 0.02	3 : 0.02	
c : 0.14	e : 0.14	g : 0.14	= : 0.14	i : 0.09	b : 0.07	a : 0.07	d : 0.04	2 : 0.04	f : 0.04	5 : 0.02	] : 0.02	
] : 0.23	g : 0.14	e : 0.09	i : 0.09	= : 0.09	2 : 0.07	d : 0.04	3 : 0.04	c : 0.04	5 : 0.02	C : 0.02	: : 0.02	G : 0.02	f : 0.02	

#score	448.124351673743
#seq	42
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF545FMX_NPM1_CDS_m2_run2.txt

#BEAR
g$$$$$cccooooooccc0000000000g	chr1:205688578-205688877(-)$1	299	128	157	11.6041
ee####cccnnnnnccc4444eeeee:CC	chr10:64573514-64573718(-)$1	204	24	53	13.3263
!ccc!!bbpppppppbb4444ccc22bb:	chr11:618790-619008(-)$1	218	70	99	11.9593
hh"""bbrrrrrrrrrbb333hhhhhhhh	chr4:174253124-174253379(-)$1	255	133	162	10.2408
iiiiiiiiiooooooiiiiiiiii333ff	chr9:100777544-100777870(+)$1	326	25	54	8.7571
cc[bbcccooooooccc4444bbccc]ff	chr19:8538961-8539228(+)$1	267	58	87	11.8808
ee####cccnnnnnccc4444eeeee]a]	chr10:64573518-64573735(-)$1	217	41	70	15.5847
dd####a[bbmmmmbb]a4444dddd777	chr2:99992833-99993115(+)$1	282	123	152	11.0887
!ccc!!bbpppppppbb4444ccc22bb]	chr11:618786-618990(-)$1	204	52	81	12.5195
dd$$$$$bbmmmmbb666666dddd22bb	chr2:232326529-232326758(-)$1	229	152	181	9.9378
e$$$$$cccnnnnnccc22eeeee]bb::	chr2:232325435-232325678(-)$1	243	142	171	10.5812

#otherMatches

#Seq PSSM
UGGCAGUUCGAAAAAGAAAAACAAAAAGA	chr1:205688578-205688877(-)$1	299	128	157	11.6041
AGAGAGACCUACAUGGUACAGCUGGCCCA	chr10:64573514-64573718(-)$1	204	24	53	13.3263
CAGACCCCAAAGCCAGGAACCUCUCAGCC	chr11:618790-619008(-)$1	218	70	99	11.9593
ugaagaugaagaaUAAAUGGCUAUCCUUU	chr4:174253124-174253379(-)$1	255	133	162	10.2408
GUUGUUGCCUCCAUUGGCAAUAAUCUAAG	chr9:100777544-100777870(+)$1	326	25	54	8.7571
GAUGAUGCUGAAAUGUGAACCUCUCUUGC	chr19:8538961-8539228(+)$1	267	58	87	11.8808
AGAGAGACCUACAUGGUACAGCUGGCCCA	chr10:64573518-64573735(-)$1	217	41	70	15.5847
AAAAGGUGUCAGAUGAGAAGGAUUCAGGG	chr2:99992833-99993115(+)$1	282	123	152	11.0887
CAGACCCCAAAGCCAGGAACCUCUCAGCC	chr11:618786-618990(-)$1	204	52	81	12.5195
CAAAAAGGCAGCAGCAACACCUGCCAAGA	chr2:232326529-232326758(-)$1	229	152	181	9.9378
AAGAAAGCUGCAAAAGUUGUUCCUGUGAA	chr2:232325435-232325678(-)$1	243	142	171	10.5812

#DB
(.....(((......)))..........)	chr1:205688578-205688877(-)$1	1	128	157	11.6041
((....(((.....)))....))))).((	chr10:64573514-64573718(-)$1	1	24	53	13.3263
.(((..((.......))....)))..)).	chr11:618790-619008(-)$1	1	70	99	11.9593
((...((.........))...))))))))	chr4:174253124-174253379(-)$1	1	133	162	10.2408
(((((((((......)))))))))...))	chr9:100777544-100777870(+)$1	1	25	54	8.7571
((.(((((......)))....))))).))	chr19:8538961-8539228(+)$1	1	58	87	11.8808
((....(((.....)))....))))).).	chr10:64573518-64573735(-)$1	1	41	70	15.5847
((....(.((....)).)....))))...	chr2:99992833-99993115(+)$1	1	123	152	11.0887
.(((..((.......))....)))..)).	chr11:618786-618990(-)$1	1	52	81	12.5195
((.....((....))......))))..))	chr2:232326529-232326758(-)$1	1	152	181	9.9378
(.....(((.....)))..))))).))..	chr2:232325435-232325678(-)$1	1	142	171	10.5812

#PSSM
e : 0.27	! : 0.18	d : 0.18	g : 0.09	h : 0.09	i : 0.09	c : 0.09	
c : 0.27	$ : 0.18	e : 0.18	d : 0.18	h : 0.09	i : 0.09	
$ : 0.27	# : 0.27	c : 0.18	" : 0.09	i : 0.09	[ : 0.09	
$ : 0.27	# : 0.27	c : 0.18	" : 0.09	i : 0.09	b : 0.09	
$ : 0.27	# : 0.27	! : 0.18	" : 0.09	i : 0.09	b : 0.09	
$ : 0.27	# : 0.27	! : 0.18	b : 0.09	i : 0.09	c : 0.09	
c : 0.45	b : 0.27	i : 0.09	a : 0.09	$ : 0.09	
c : 0.45	b : 0.27	r : 0.09	i : 0.09	[ : 0.09	
c : 0.36	p : 0.18	b : 0.18	r : 0.09	i : 0.09	o : 0.09	
o : 0.27	n : 0.27	p : 0.18	r : 0.09	b : 0.09	m : 0.09	
o : 0.27	n : 0.27	p : 0.18	m : 0.18	r : 0.09	
o : 0.27	n : 0.27	p : 0.18	m : 0.18	r : 0.09	
o : 0.27	n : 0.27	p : 0.18	m : 0.18	r : 0.09	
o : 0.27	n : 0.27	p : 0.18	r : 0.09	m : 0.09	b : 0.09	
c : 0.36	o : 0.18	p : 0.18	b : 0.18	r : 0.09	
c : 0.45	b : 0.27	r : 0.09	i : 0.09	6 : 0.09	
c : 0.45	b : 0.27	i : 0.09	] : 0.09	6 : 0.09	
4 : 0.45	c : 0.09	b : 0.09	i : 0.09	a : 0.09	6 : 0.09	2 : 0.09	
4 : 0.54	0 : 0.09	3 : 0.09	i : 0.09	6 : 0.09	2 : 0.09	
4 : 0.54	0 : 0.09	3 : 0.09	i : 0.09	6 : 0.09	e : 0.09	
4 : 0.54	0 : 0.09	3 : 0.09	i : 0.09	6 : 0.09	e : 0.09	
e : 0.27	c : 0.18	0 : 0.09	h : 0.09	i : 0.09	b : 0.09	4 : 0.09	d : 0.09	
e : 0.27	c : 0.18	d : 0.18	0 : 0.09	h : 0.09	i : 0.09	b : 0.09	
e : 0.27	c : 0.27	d : 0.18	0 : 0.09	h : 0.09	i : 0.09	
e : 0.18	2 : 0.18	d : 0.18	0 : 0.09	h : 0.09	3 : 0.09	c : 0.09	] : 0.09	
2 : 0.27	e : 0.18	0 : 0.09	h : 0.09	3 : 0.09	c : 0.09	d : 0.09	b : 0.09	
b : 0.27	] : 0.18	0 : 0.09	: : 0.09	h : 0.09	3 : 0.09	7 : 0.09	2 : 0.09	
b : 0.27	f : 0.18	0 : 0.09	C : 0.09	h : 0.09	a : 0.09	7 : 0.09	: : 0.09	
: : 0.18	f : 0.18	] : 0.18	g : 0.09	C : 0.09	h : 0.09	7 : 0.09	b : 0.09	

#score	127.48084616261818
#seq	11
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_CDS_m1_run1.txt

#BEAR
iiiiiiiibb!!ddddoooooodddd22bb22iiiiii	chr22:50873257-50873565(+)$1	308	65	103	11.6223
ee[ffffff[bb[cccnnnnnccc]bbffffff22eee	chr1:110559961-110560251(+)$1	290	22	60	11.5491
##ccc[ccc[bb[aooooooa]bb]ccc]ccc333eee	chr1:150523018-150523250(+)$1	232	65	103	12.1461
fffff"""dddd!!cccmmmmccc333dddd333ffff	chr1:38274068-38274347(+)$1	279	17	55	13.7392
ffggggggg####cccnnnnnccc333ggggggg333f	chr19:15367868-15368141(-)$1	273	51	89	15.4682
fccc[ccc!!bb[a!!bblllbb22a]bbccc]ccc]f	chr1:153912135-153912458(-)$1	323	117	155	11.0161
c$$$$$dddd[eeeeellleeeee22dddd4444ccc2	chr16:46637425-46637701(-)$1	276	162	200	11.0844
ffffffdddd[a!!ddddaooooooa]dddd22adddd	chr9:35738496-35738775(-)$1	279	232	270	10.5337
g[bb"""eeeee[cccnnnnnccc]eeeee22bbgggg	chr17:47123096-47123369(+)$1	273	14	52	13.1075
hhhhdddd"""ccc!!bbnnnnnbb333ccc333dddd	chr1:45221561-45221849(+)$1	288	65	103	11.0427
dd####ccc!!eeeeennnnneeeee22ccc4444ddd	chr1:19671614-19671901(-)$1	287	198	236	13.8237
eeedddd[dddd"""annnnna333dddd]dddd]eee	chr16:89976801-89977134(+)$1	333	74	112	12.6613
ggggg"""ddddxxxxxxxxxxxxxxxdddd333gggg	chr11:95521566-95521861(-)$1	295	46	84	12.6092
:dddd"""dddd[a[ccclllccc]a]dddd4444ddd	chr1:2441474-2441745(-)$1	271	185	223	12.7713
""ccc[ccc"""cccooooooccc]ccc]ccc]fffff	chr16:1903008-1903282(-)$1	274	182	220	13.7100
g[cccdddda[ddddnnnnndddd]a]dddd333ccc4	chr4:2909317-2909590(+)$1	273	38	76	14.5355
beeeee[cccbb[cccnnnnnccc22bb]ccceeeee]	chr13:111562985-111563276(-)$1	291	177	215	12.7300
c[ccc[dddd$$$$$ccclllccc333dddd]ccc]cc	chrX:153693224-153693519(+)$1	295	230	268	13.9975
fff[eeeee"""ddddnnnnndddd4444eeeeeffff	chr8:145109481-145109731(-)$1	250	71	109	13.0499
eeeedddd####ddddnnnnndddd4444dddd]eeee	chr6:33177535-33177812(+)$1	277	133	171	13.8304
bb####ccc!!eeeeennnnneeeee]ccc4444bb]b	chr12:120611484-120611788(-)$1	304	76	114	13.1953
iiiccc!!dddd[ddddmmmmdddd]dddd333ccc]i	chr16:277213-277493(-)$1	280	60	98	12.0614
"""a!!dddd[eeeeennnnneeeee22dddd22a444	chr13:45911512-45911743(-)$1	231	77	115	13.5841
:iiiiiiiii"""cccnnnnnccc666666iiiiiiii	chr1:28169551-28169800(+)$1	249	74	112	12.0657
ddd!!dddd[ccc[cccmmmmccccccdddd22dddd3	chr16:28969882-28970183(+)$1	301	108	146	11.6388
ccc"""bb[gggggggnnnnnggggggg]bb333ccc:	chr11:64535630-64535884(-)$1	254	156	194	11.9624
gg[affffff[ccc[ccclllccc]ccc]ffffff]a]	chr19:1271400-1271667(+)$1	267	16	54	10.4716
e!!dddd[dddd[cccnnnnnccc]dddddddd22eee	chr17:40462352-40462643(+)$1	291	13	51	13.9911
f[a[dddd[a[a[ddddlllddddaa]dddd]a22fff	chr3:184041015-184041298(+)$1	283	110	148	13.0904
d####eeeeedddd[ddddllldddd]dddd333eeee	chr22:39714944-39715154(-)$1	210	49	87	10.4228
##dddd[ccc[a!!ccclllccc4444accc]ddddff	chr2:218700749-218701044(-)$1	295	115	153	13.7450
cc!!bb"""gggggggnnnnnggggggg]bb22ccc]c	chr17:72859239-72859503(-)$1	264	75	113	11.9651
gggg[ddddzzzzzzzzzzzzzzzzzdddd]ggggggg	chrX:153928208-153928500(-)$1	292	238	276	9.7067
ii[a[dddd!!a[cccnnnnnccc]a]dddd333a]ii	chr17:76120135-76120380(-)$1	245	29	67	18.0941
iiiii[eeeeea[ccclllccc]a22eeeee]iiiiii	chr7:1474163-1474505(-)$1	342	4	42	12.1543
==$$$$$ccc[a[ccclllccc]accc===========	chr17:48453257-48453569(+)$1	312	175	213	12.0976
eeeee!!a####cccooooooccc333a22eeeee:hh	chr7:150774381-150774657(-)$1	276	13	51	12.0380
ffffffdddd[a[cccnnnnnccc]adddd333fffff	chr16:89788792-89789060(+)$1	268	7	45	15.4377
"""a[bbeeeee[aooooooa]eeeee]bba333cccF	chr14:35872460-35872721(-)$1	261	64	102	10.9040
dddd[ccc[a####bbnnnnnbb333a]ccc]dddd44	chr8:41805286-41805550(-)$1	264	75	113	13.8640
[ccc####bb[eeeeennnnneeeee]bb333cccddd	chr19:3201355-3201644(+)$1	289	246	284	12.4180
::eeeeeccc"""cccmmmmccc333ccc4444eeeee	chr20:34214168-34214418(-)$1	250	135	173	11.1345
cccccc[ccc!!ddddoooooodddd22ccc333ccc]	chr19:15512258-15512572(-)$1	314	195	233	14.0382
c[ggggggg####cccnnnnnccc333gggggggcccc	chr1:153948254-153948536(-)$1	282	206	244	15.9433
!ccc[dddd!!a!!cccooooooccc333a22ddddcc	chr9:35718794-35719058(-)$1	264	143	181	13.6607
[adddd####bb!!bbnnnnnbb22bb22dddd]a]==	chr12:110820619-110820876(-)$1	257	105	143	11.5478
dddd[dddd"""ddddmmmmdddd4444dddd]ddddg	chr3:15091311-15091602(-)$1	291	57	95	12.1002
bbdddd[dddd####aooooooa4444dddd]ddddEE	chr10:49634948-49635250(+)$1	302	163	201	11.1874
bb!!a!!eeeee[cccooooooccceeeee22a]bbbb	chrX:153178945-153179198(-)$1	253	11	49	11.3677
dccc[ccc[a[a[ddddnnnnndddd]a22a]cccccc	chr12:48179140-48179412(-)$1	272	226	264	12.9983
dddffffff"""ddddnnnnnddddffffff]dddd]b	chr1:228329304-228329565(+)$1	261	174	212	11.2867
cccdddd[a!!a[cccnnnnnccc]a22adddd]ccc]	chr1:228295450-228295707(-)$1	257	143	181	15.8051
eeeeeeee[a[a[cccmmmmccca]a]eeeee]eeeee	chr9:139565250-139565523(+)$1	273	99	137	11.9790
iiiiiiiii[a!!cccmmmmccc22a]iiiiiiiiigg	chr11:46822713-46823012(-)$1	299	136	174	12.5511
eeeee[dddd"""cccmmmmccc333ddddeeeee]dd	chr19:39966535-39966831(+)$1	296	222	260	12.4241
ccccc!!dddd[eeeeemmmmeeeee]dddd4444ccc	chr14:35497174-35497422(+)$1	248	177	215	11.6714

#otherMatches

#Seq PSSM
UUGGCUCUCUGGGUCGUGGGUCUGGCAAGGUCGGGGCC	chr22:50873257-50873565(+)$1	308	65	103	11.6223
AGCGUCUGUGCAGCUGCUCACCAGAUGACAGGCUAUUU	chr1:110559961-110560251(+)$1	290	22	60	11.5491
CCCUCAGCUGGAGUAACAAGAGUCAGGCAGAGCCUGAA	chr1:150523018-150523250(+)$1	232	65	103	12.1461
GGCCCGGGCUCAGACUGGUCACGGGGGUGAGAGGGGGC	chr1:38274068-38274347(+)$1	279	17	55	13.7392
UCGGUUGCUUUCUGUUGAGUUGGCCCCAGCAGCCAAUG	chr19:15367868-15368141(-)$1	273	51	89	15.4682
GCAGAGUUGAGGGUAACACUAUGGGAGCCAGCCCUGAC	chr1:153912135-153912458(-)$1	323	117	155	11.0161
CUGCUUCGAAGGUGACACUGUUAUUGUUUGUCCUGGCC	chr16:46637425-46637701(-)$1	276	162	200	11.0844
AUGGGUGACCACAGGCCCCAGGUUAGCGGGUAGGGGUU	chr9:35738496-35738775(-)$1	279	232	270	10.5337
CACCUGCCUUAGAUGGUUAGCCCGCCUAGGAUGGGGAG	chr17:47123096-47123369(+)$1	273	14	52	13.1075
UGUUAGGAAACGCCCACUGAAUAAGCAAGGUAAGUCCU	chr1:45221561-45221849(+)$1	288	65	103	11.0427
CCAACAUCGGGCGCCUGGUAGAGGUGAGUGACCUGGGC	chr1:19671614-19671901(-)$1	287	198	236	13.8237
GCCCCCUGGCGGCCCCUCCGUGUCCCUGCGAGGGAGGC	chr16:89976801-89977134(+)$1	333	74	112	12.6613
UCACUAGGUUGGGUAAACAGUUUUCUACCAGAAAAGUG	chr11:95521566-95521861(-)$1	295	46	84	12.6092
GACGUGACCCACAGCGAGUCCCUCAUCGUGGCAGAGCG	chr1:2441474-2441745(-)$1	271	185	223	12.7713
AAAUUUCGGAACUGCAUGACAGCAACUGUAAUCUCAAA	chr16:1903008-1903282(-)$1	274	182	220	13.7100
UCCUCUCUGUGAUGUUCAGUGCAUGACCAGAUGUGAGA	chr4:2909317-2909590(+)$1	273	38	76	14.5355
UUGGUGAGAGCGGGAGCCACACUCAACGUCUCCACCAC	chr13:111562985-111563276(-)$1	291	177	215	12.7300
AGUCGGGCCAGAAGAACUAUGAGUGCGUGGUGCGGGUG	chrX:153693224-153693519(+)$1	295	230	268	13.9975
ACCGUGGCUCUCCACCCGCUAGGUGUUUUGGCCGGGUC	chr8:145109481-145109731(-)$1	250	71	109	13.0499
GGGCUUCCCUUCUCCUACCCCAGGAACAAGGAGUGUCC	chr6:33177535-33177812(+)$1	277	133	171	13.8304
UGGCUUGUUUUUUGCACUGCUUGCAAUGAUUUGACAUG	chr12:120611484-120611788(-)$1	304	76	114	13.1953
GAUAGUCUGCAAAUCAUCCAGGUGAAUUGUUAUACUAG	chr16:277213-277493(-)$1	280	60	98	12.0614
GCGCUUUCUGUCUGUCUUUGUGGCGGCCCAGAUUGAAU	chr13:45911512-45911743(-)$1	231	77	115	13.5841
UUUAGUAUGAUUUUCUCCAUCAGAUUCCCUUUGUACUG	chr1:28169551-28169800(+)$1	249	74	112	12.0657
GAUUUCAAGGCAGGAAGACCUCUUUUGCUUGUUGUCCC	chr16:28969882-28970183(+)$1	301	108	146	11.6388
AGCACGGAUGGAUAAAGAAUAUUUGUCCCUCAUGGCUG	chr11:64535630-64535884(-)$1	254	156	194	11.9624
CCGGGGCUUCUUCCGUGGGGGCCGAGGACGGGGCCGUG	chr19:1271400-1271667(+)$1	267	16	54	10.4716
GACUGCUACCCAGCUUGGGGUGGGGUGGGGGCAUCCAG	chr17:40462352-40462643(+)$1	291	13	51	13.9911
GUAGUAGUGGUGUCACAUAUUGUGCUGACUAGUUCCAU	chr3:184041015-184041298(+)$1	283	110	148	13.0904
CUUAUUGACGGGCGGACAGAAACUGUGUGCUGAUUGUC	chr22:39714944-39715154(-)$1	210	49	87	10.4228
CAGGCUCGGGAGAAGCAGCCUGCAGAGCCCCCAGCCCC	chr2:218700749-218701044(-)$1	295	115	153	13.7450
GGAUGGCCAGGGUGGUAUCCAGCCACCUCCCUCCCUUC	chr17:72859239-72859503(-)$1	264	75	113	11.9651
GGUUCUUUUAAGCAUCAAUUUUACCAAAAACAGCUUGA	chrX:153928208-153928500(-)$1	292	238	276	9.7067
CUCCUCCUGCUCUGCCCCUGUGGCUGUCAGGCCUGAGG	chr17:76120135-76120380(-)$1	245	29	67	18.0941
GGACCAGCCCUCCGGGGCACCCAGUCGGGGCAGGUUCU	chr7:1474163-1474505(-)$1	342	4	42	12.1543
UACAGAUGGAAGGUGGGGGCCAGCUCCUAGGAGCACUG	chr17:48453257-48453569(+)$1	312	175	213	12.0976
GAGGGACCAUGAAGCGCCAAAGCUAAGGAGCUCUCGGC	chr7:150774381-150774657(-)$1	276	13	51	12.0380
CGCGCGCCCGAGCCGCUUGCUGUGUCCGGGAGCCGCGC	chr16:89788792-89789060(+)$1	268	7	45	15.4377
CAGCACCCAACCAGGAGACACGGGUUGAGGGGAACUCG	chr14:35872460-35872721(-)$1	261	64	102	10.9040
UAAAGAGACCCUCUACUGACUGUUUUGUUCUGUUUAUU	chr8:41805286-41805550(-)$1	264	75	113	13.8640
ACCUACAAGCGCACGCACGCCGCGUGAGUGCCGGGGUG	chr19:3201355-3201644(+)$1	289	246	284	12.4180
ACAGACCGUGCUCGCAGAAGUGCCCACACAACUGGUCU	chr20:34214168-34214418(-)$1	250	135	173	11.1345
CUGAGUGAGCGCGACCUGUACCGGUCAGGCUAUGACUA	chr19:15512258-15512572(-)$1	314	195	233	14.0382
AGCUCAUCUAAGAGAAAUGAGUUCAAAAGGUGAGUGCU	chr1:153948254-153948536(-)$1	282	206	244	15.9433
CUCCACAGCCCCGUCAGAACCUGCUGCAAGCAGCUGGG	chr9:35718794-35719058(-)$1	264	143	181	13.6607
UUCUAGGAAUGGAUGUAUAUGGCUACCUACUGGCACGA	chr12:110820619-110820876(-)$1	257	105	143	11.5478
AGAAAAUGUGAGGAUUUUAUAAUUGAUAACAUGUUCUU	chr3:15091311-15091602(-)$1	291	57	95	12.1002
GUGUUUUUCAGCCACCACCAAAGAUCCCUGACAAGCAG	chr10:49634948-49635250(+)$1	302	163	201	11.1874
GCCUGUACAGCCUGCUGUUGGAAGUGGCUGCCCUGCCU	chrX:153178945-153179198(-)$1	253	11	49	11.3677
CGUGAUCCGGGUGCACAGUAAGUGUGGAGAUGGGACAC	chr12:48179140-48179412(-)$1	272	226	264	12.9983
UCCCAGGAGACCUUCCAUCUCGGAGCUCCUGUGGAGAC	chr1:228329304-228329565(+)$1	261	174	212	11.2867
GAGGCAGAGCACCGUGAAGGCCACCGGACCUGCACUCC	chr1:228295450-228295707(-)$1	257	143	181	15.8051
GUGUGGGUGGGGAGCCGGCCGGCCGUGACCCAGCGCCU	chr9:139565250-139565523(+)$1	273	99	137	11.9790
UCCUUUUUACCCCCCUUUGUAGGUUGUUGGAAAGGACA	chr11:46822713-46823012(-)$1	299	136	174	12.5511
AGGUUGUCAGCAUUUCCAGUGAGCACCUGGAGCCUAUC	chr19:39966535-39966831(+)$1	296	222	260	12.4241
GGCCAAAAUGAUGGAUCCUAGGGUUCUUCAUCACAUGG	chr14:35497174-35497422(+)$1	248	177	215	11.6714

#DB
((((((((((..((((......))))..))..))))))	chr22:50873257-50873565(+)$1	1	65	103	11.6223
((.((((((.((.(((.....))).))))))))..)))	chr1:110559961-110560251(+)$1	1	22	60	11.5491
..(((.(((.((.(......).)).))).)))...)))	chr1:150523018-150523250(+)$1	1	65	103	12.1461
(((((...((((..(((....)))...))))...))))	chr1:38274068-38274347(+)$1	1	17	55	13.7392
(((((((((....(((.....)))...)))))))...)	chr19:15367868-15368141(-)$1	1	51	89	15.4682
((((.(((..((.(..((...))..).))))).))).)	chr1:153912135-153912458(-)$1	1	117	155	11.0161
(.....((((.(((((...)))))..))))....))).	chr16:46637425-46637701(-)$1	1	162	200	11.0844
))))))((((.(..(((((......).))))..)))))	chr9:35738496-35738775(-)$1	1	232	270	10.5337
(.((...(((((.(((.....))).)))))..))))))	chr17:47123096-47123369(+)$1	1	14	52	13.1075
))))((((...(((..((.....))...)))...))))	chr1:45221561-45221849(+)$1	1	65	103	11.0427
((....(((..(((((.....)))))..)))....)))	chr1:19671614-19671901(-)$1	1	198	236	13.8237
(((((((.((((...(.....)...)))).)))).)))	chr16:89976801-89977134(+)$1	1	74	112	12.6613
(((((...((((...............))))...))))	chr11:95521566-95521861(-)$1	1	46	84	12.6092
.((((...((((.(.(((...))).).))))....)))	chr1:2441474-2441745(-)$1	1	185	223	12.7713
..(((.(((...(((......))).))).))).)))))	chr16:1903008-1903282(-)$1	1	182	220	13.7100
(.((((((((.((((.....)))).).))))...))).	chr4:2909317-2909590(+)$1	1	38	76	14.5355
((((((.(((((.(((.....)))..)).)))))))).	chr13:111562985-111563276(-)$1	1	177	215	12.7300
(.(((.((((.....(((...)))...)))).))).))	chrX:153693224-153693519(+)$1	1	230	268	13.9975
(((.(((((...((((.....))))....)))))))))	chr8:145109481-145109731(-)$1	1	71	109	13.0499
((((((((....((((.....))))....)))).))))	chr6:33177535-33177812(+)$1	1	133	171	13.8304
((....(((..(((((.....))))).)))....)).)	chr12:120611484-120611788(-)$1	1	76	114	13.1953
((((((..((((.((((....)))).))))...))).)	chr16:277213-277493(-)$1	1	60	98	12.0614
...(..((((.(((((.....)))))..))))..)...	chr13:45911512-45911743(-)$1	1	77	115	13.5841
.(((((((((...(((.....)))......))))))))	chr1:28169551-28169800(+)$1	1	74	112	12.0657
(((..((((.(((.(((....))))))))))..)))).	chr16:28969882-28970183(+)$1	1	108	146	11.6388
(((...((.(((((((.....))))))).))...))).	chr11:64535630-64535884(-)$1	1	156	194	11.9624
((.(((((((.(((.(((...))).))).)))))).).	chr19:1271400-1271667(+)$1	1	16	54	10.4716
(..((((.((((.(((.....))).))))))))..)))	chr17:40462352-40462643(+)$1	1	13	51	13.9911
(.(.((((.(.(.((((...)))))).)))).)..)))	chr3:184041015-184041298(+)$1	1	110	148	13.0904
(....(((((((((.((((...)))).))))...))))	chr22:39714944-39715154(-)$1	1	49	87	10.4228
..((((.(((.(..(((...)))....)))).))))))	chr2:218700749-218701044(-)$1	1	115	153	13.7450
((..((...(((((((.....))))))).))..))).)	chr17:72859239-72859503(-)$1	1	75	113	11.9651
((((.((((.................)))).)))))))	chrX:153928208-153928500(-)$1	1	238	276	9.7067
((.(.((((..(.(((.....))).).))))...).))	chr17:76120135-76120380(-)$1	1	29	67	18.0941
(((((.((((((.(((...))).)..))))).))))))	chr7:1474163-1474505(-)$1	1	4	42	12.1543
((.....(((.(.(((...))).)))))))))))))))	chr17:48453257-48453569(+)$1	1	175	213	12.0976
(((((..(....(((......)))...)..))))).((	chr7:150774381-150774657(-)$1	1	13	51	12.0380
((((((((((.(.(((.....))).)))))...)))))	chr16:89788792-89789060(+)$1	1	7	45	15.4377
...(.(((((((.(......).))))).)))...))))	chr14:35872460-35872721(-)$1	1	64	102	10.9040
((((.(((.(....((.....))...).))).))))..	chr8:41805286-41805550(-)$1	1	75	113	13.8640
.(((....((.(((((.....))))).))...))))))	chr19:3201355-3201644(+)$1	1	246	284	12.4180
..((((((((...(((....)))...)))....)))))	chr20:34214168-34214418(-)$1	1	135	173	11.1345
((((((.(((..((((......))))..)))...))).	chr19:15512258-15512572(-)$1	1	195	233	14.0382
(.(((((((....(((.....)))...)))))))))))	chr1:153948254-153948536(-)$1	1	206	244	15.9433
.(((.((((..(..(((......)))...)..))))))	chr9:35718794-35719058(-)$1	1	143	181	13.6607
.(((((....((..((.....))..))..)))).).))	chr12:110820619-110820876(-)$1	1	105	143	11.5478
((((.((((...((((....))))....)))).)))))	chr3:15091311-15091602(-)$1	1	57	95	12.1002
))((((.((((....(......)....)))).))))))	chr10:49634948-49635250(+)$1	1	163	201	11.1874
((..(..(((((.(((......))))))))..).))))	chrX:153178945-153179198(-)$1	1	11	49	11.3677
)(((.(((.(.(.((((.....)))).)..).))))))	chr12:48179140-48179412(-)$1	1	226	264	12.9983
(((((((((...((((.....)))))))))).)))).)	chr1:228329304-228329565(+)$1	1	174	212	11.2867
(((((((.(..(.(((.....))).)..))))).))).	chr1:228295450-228295707(-)$1	1	143	181	15.8051
((((((((.(.(.(((....)))).).))))).)))))	chr9:139565250-139565523(+)$1	1	99	137	11.9790
(((((((((.(..(((....)))..).)))))))))((	chr11:46822713-46823012(-)$1	1	136	174	12.5511
(((((.((((...(((....)))...))))))))).))	chr19:39966535-39966831(+)$1	1	222	260	12.4241
(((((..((((.(((((....))))).))))....)))	chr14:35497174-35497422(+)$1	1	177	215	11.6714

#PSSM
c : 0.14	e : 0.12	f : 0.12	d : 0.12	i : 0.08	g : 0.08	b : 0.07	: : 0.05	" : 0.05	# : 0.03	[ : 0.03	h : 0.01	= : 0.01	! : 0.01	
c : 0.16	e : 0.12	i : 0.10	d : 0.10	f : 0.08	[ : 0.08	# : 0.05	g : 0.05	" : 0.05	b : 0.05	$ : 0.01	h : 0.01	! : 0.01	= : 0.01	: : 0.01	a : 0.01	
c : 0.21	d : 0.14	e : 0.12	i : 0.08	f : 0.07	g : 0.07	[ : 0.05	# : 0.05	! : 0.05	$ : 0.03	" : 0.03	b : 0.01	h : 0.01	a : 0.01	
c : 0.19	d : 0.16	e : 0.10	f : 0.08	i : 0.07	g : 0.07	a : 0.07	# : 0.05	! : 0.05	$ : 0.03	[ : 0.03	b : 0.01	h : 0.01	" : 0.01	
d : 0.17	[ : 0.14	c : 0.12	f : 0.10	e : 0.10	i : 0.07	# : 0.07	g : 0.05	$ : 0.03	" : 0.03	! : 0.03	b : 0.01	a : 0.01	
d : 0.26	f : 0.08	[ : 0.08	" : 0.08	c : 0.08	e : 0.08	! : 0.07	i : 0.05	# : 0.05	g : 0.03	$ : 0.03	b : 0.03	
d : 0.32	c : 0.12	" : 0.08	e : 0.08	[ : 0.07	! : 0.07	i : 0.05	f : 0.05	g : 0.03	b : 0.03	# : 0.03	$ : 0.01	
d : 0.30	c : 0.21	e : 0.12	" : 0.07	i : 0.05	f : 0.05	[ : 0.05	g : 0.03	# : 0.03	! : 0.01	b : 0.01	a : 0.01	
d : 0.35	c : 0.16	e : 0.10	[ : 0.08	f : 0.05	# : 0.05	b : 0.03	g : 0.03	" : 0.03	i : 0.03	! : 0.01	a : 0.01	
d : 0.24	! : 0.10	# : 0.08	e : 0.08	" : 0.08	a : 0.08	c : 0.08	[ : 0.07	b : 0.03	g : 0.03	i : 0.01	f : 0.01	z : 0.01	
[ : 0.21	d : 0.16	" : 0.14	! : 0.12	b : 0.08	# : 0.08	e : 0.07	g : 0.03	$ : 0.01	c : 0.01	z : 0.01	a : 0.01	
a : 0.19	d : 0.14	e : 0.14	" : 0.12	# : 0.10	b : 0.08	! : 0.05	c : 0.05	g : 0.03	$ : 0.01	z : 0.01	[ : 0.01	
[ : 0.32	d : 0.14	! : 0.10	e : 0.10	c : 0.08	# : 0.07	" : 0.07	g : 0.03	x : 0.01	$ : 0.01	z : 0.01	
c : 0.37	d : 0.19	e : 0.10	! : 0.08	a : 0.07	g : 0.03	# : 0.03	" : 0.01	x : 0.01	$ : 0.01	[ : 0.01	z : 0.01	
c : 0.41	d : 0.19	e : 0.10	[ : 0.05	o : 0.03	! : 0.03	g : 0.03	b : 0.03	" : 0.01	x : 0.01	$ : 0.01	z : 0.01	# : 0.01	
c : 0.42	d : 0.19	e : 0.10	o : 0.07	! : 0.03	a : 0.03	g : 0.03	b : 0.03	x : 0.01	n : 0.01	z : 0.01	
n : 0.41	o : 0.14	c : 0.12	d : 0.08	m : 0.08	l : 0.05	b : 0.03	x : 0.01	z : 0.01	e : 0.01	
n : 0.42	o : 0.16	m : 0.16	l : 0.08	c : 0.05	b : 0.03	d : 0.03	x : 0.01	z : 0.01	
n : 0.44	o : 0.16	m : 0.16	l : 0.16	a : 0.01	x : 0.01	d : 0.01	z : 0.01	
n : 0.44	o : 0.17	m : 0.16	l : 0.12	c : 0.03	e : 0.01	x : 0.01	z : 0.01	
n : 0.42	o : 0.14	c : 0.12	l : 0.08	m : 0.07	d : 0.05	a : 0.03	e : 0.01	x : 0.01	z : 0.01	
c : 0.42	d : 0.12	o : 0.10	e : 0.10	b : 0.05	] : 0.03	n : 0.03	g : 0.03	a : 0.01	x : 0.01	l : 0.01	z : 0.01	
c : 0.41	d : 0.19	e : 0.12	b : 0.07	o : 0.03	g : 0.03	] : 0.03	n : 0.01	3 : 0.01	x : 0.01	z : 0.01	a : 0.01	
c : 0.33	d : 0.19	e : 0.12	3 : 0.07	2 : 0.05	a : 0.05	b : 0.03	g : 0.03	4 : 0.03	o : 0.01	x : 0.01	z : 0.01	
] : 0.21	3 : 0.16	d : 0.14	2 : 0.10	e : 0.10	c : 0.07	4 : 0.05	g : 0.03	o : 0.01	b : 0.01	x : 0.01	6 : 0.01	a : 0.01	z : 0.01	
a : 0.17	3 : 0.16	e : 0.14	d : 0.10	c : 0.10	4 : 0.08	2 : 0.05	b : 0.03	g : 0.03	x : 0.01	] : 0.01	6 : 0.01	z : 0.01	f : 0.01	
] : 0.23	3 : 0.12	d : 0.12	c : 0.10	2 : 0.08	4 : 0.08	e : 0.07	b : 0.05	g : 0.03	x : 0.01	6 : 0.01	a : 0.01	f : 0.01	
d : 0.33	2 : 0.10	c : 0.08	g : 0.07	e : 0.07	b : 0.05	4 : 0.05	a : 0.05	f : 0.03	3 : 0.03	] : 0.03	6 : 0.01	= : 0.01	i : 0.01	
d : 0.37	c : 0.12	] : 0.10	b : 0.07	e : 0.07	2 : 0.05	f : 0.03	g : 0.03	4 : 0.03	6 : 0.01	= : 0.01	3 : 0.01	a : 0.01	i : 0.01	
d : 0.41	c : 0.17	e : 0.08	b : 0.07	f : 0.05	g : 0.03	2 : 0.03	] : 0.01	6 : 0.01	= : 0.01	3 : 0.01	4 : 0.01	a : 0.01	i : 0.01	
d : 0.33	c : 0.16	e : 0.08	2 : 0.07	f : 0.05	4 : 0.05	3 : 0.05	g : 0.03	i : 0.03	b : 0.03	a : 0.03	] : 0.01	= : 0.01	
3 : 0.21	] : 0.14	2 : 0.12	d : 0.12	4 : 0.10	c : 0.07	e : 0.07	g : 0.05	f : 0.03	i : 0.03	= : 0.01	
3 : 0.21	d : 0.17	4 : 0.10	i : 0.07	] : 0.07	2 : 0.07	e : 0.07	g : 0.05	c : 0.05	f : 0.03	a : 0.03	b : 0.01	= : 0.01	
3 : 0.17	d : 0.14	c : 0.10	e : 0.10	4 : 0.08	i : 0.07	2 : 0.07	] : 0.07	g : 0.05	f : 0.05	a : 0.01	b : 0.01	= : 0.01	
c : 0.23	d : 0.16	e : 0.12	f : 0.08	i : 0.07	2 : 0.05	g : 0.05	4 : 0.05	a : 0.05	3 : 0.03	b : 0.03	] : 0.01	= : 0.01	
c : 0.21	d : 0.21	e : 0.16	f : 0.08	] : 0.08	i : 0.07	g : 0.05	b : 0.03	3 : 0.01	4 : 0.01	= : 0.01	: : 0.01	
c : 0.19	e : 0.16	d : 0.14	f : 0.10	] : 0.08	i : 0.07	g : 0.07	4 : 0.03	= : 0.03	3 : 0.01	a : 0.01	h : 0.01	E : 0.01	b : 0.01	
e : 0.14	f : 0.14	d : 0.10	c : 0.10	i : 0.08	g : 0.08	] : 0.07	4 : 0.05	b : 0.05	= : 0.03	2 : 0.01	3 : 0.01	: : 0.01	h : 0.01	F : 0.01	E : 0.01	

#score	709.6343842950621
#seq	56
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_UTR_m3_run1.txt

#BEAR
ggggggmmmmggggggg	chr10:103545082-103545357(-)$1	275	225	242	8.1935
ee!!bbmmmmbb22eee	chr21:35476760-35477070(+)$1	310	225	242	8.1834
""ddddmmmmddddiii	chr21:46281688-46281952(-)$1	264	142	159	9.2424
c[ddddmmmmdddd]cc	chr20:34312412-34312680(-)$1	268	46	63	9.0767
ddd[bbmmmmbb]dddd	chr20:57226405-57226658(+)$1	253	150	167	8.4112
ggggggmmmmggggggg	chr3:196082532-196082837(-)$1	305	244	261	8.1935
b[ddddmmmmddddbb]	chr22:20073330-20073574(+)$1	244	187	204	8.6613
ccc[bbmmmmbb]ccc:	chr11:75114079-75114321(+)$1	242	90	107	8.3106
b!!cccmmmmccc]bb]	chr1:151024195-151024437(-)$1	242	217	234	9.1504
ccccccmmmmccc]ccc	chr1:36393154-36393467(+)$1	313	72	89	9.1584
"""cccmmmmccc333g	chr1:161088100-161088509(+)$1	409	199	216	9.5519
cc!!bbmmmmbbcccdd	chr17:30701866-30702120(+)$1	254	158	175	9.1280
""ddddmmmmddddccc	chr20:5526311-5526586(-)$1	275	31	48	9.3494

#otherMatches

#Seq PSSM
UGAUUUUAUUAAAUCAG	chr10:103545082-103545357(-)$1	275	225	242	8.1935
CAGGCCUGGGGGGAUGA	chr21:35476760-35477070(+)$1	310	225	242	8.1834
UUGCUACAGAUGGUGAC	chr21:46281688-46281952(-)$1	264	142	159	9.2424
UGAGGAUGAUUUCUGAC	chr20:34312412-34312680(-)$1	268	46	63	9.0767
GUUGUCCAAAGAGGGCC	chr20:57226405-57226658(+)$1	253	150	167	8.4112
GCAUACUUAGGUAUGUC	chr3:196082532-196082837(-)$1	305	244	261	8.1935
CGUGUGGGCCCGCAGGA	chr22:20073330-20073574(+)$1	244	187	204	8.6613
ACUGGUAGGGAUGGGUA	chr11:75114079-75114321(+)$1	242	90	107	8.3106
uuugucugaagaccagg	chr1:151024195-151024437(-)$1	242	217	234	9.1504
ucauccaucaggagugg	chr1:36393154-36393467(+)$1	313	72	89	9.1584
ACUGCGGAAACGUUUGU	chr1:161088100-161088509(+)$1	409	199	216	9.5519
AAUUACUUUUGUUUCUU	chr17:30701866-30702120(+)$1	254	158	175	9.1280
UUUUGAAGACUCAAGGA	chr20:5526311-5526586(-)$1	275	31	48	9.3494

#DB
((((((....)))))))	chr10:103545082-103545357(-)$1	1	225	242	8.1935
((..((....))..)))	chr21:35476760-35477070(+)$1	1	225	242	8.1834
..((((....)))))))	chr21:46281688-46281952(-)$1	1	142	159	9.2424
(.((((....)))).))	chr20:34312412-34312680(-)$1	1	46	63	9.0767
(((.((....)).))))	chr20:57226405-57226658(+)$1	1	150	167	8.4112
((((((....)))))))	chr3:196082532-196082837(-)$1	1	244	261	8.1935
(.((((....)))))).	chr22:20073330-20073574(+)$1	1	187	204	8.6613
(((.((....)).))).	chr11:75114079-75114321(+)$1	1	90	107	8.3106
(..(((....))).)).	chr1:151024195-151024437(-)$1	1	217	234	9.1504
((((((....))).)))	chr1:36393154-36393467(+)$1	1	72	89	9.1584
...(((....)))...)	chr1:161088100-161088509(+)$1	1	199	216	9.5519
((..((....)))))))	chr17:30701866-30702120(+)$1	1	158	175	9.1280
..((((....)))))))	chr20:5526311-5526586(-)$1	1	31	48	9.3494

#PSSM
c : 0.30	" : 0.23	g : 0.15	b : 0.15	e : 0.07	d : 0.07	
" : 0.23	c : 0.23	g : 0.15	[ : 0.15	e : 0.07	d : 0.07	! : 0.07	
d : 0.38	! : 0.23	g : 0.15	c : 0.15	" : 0.07	
d : 0.30	c : 0.23	g : 0.15	! : 0.15	[ : 0.15	
b : 0.30	d : 0.30	c : 0.23	g : 0.15	
b : 0.30	d : 0.30	c : 0.23	g : 0.15	
m : 0.99	
m : 0.99	
m : 0.99	
m : 0.99	
b : 0.30	d : 0.30	c : 0.23	g : 0.15	
b : 0.30	d : 0.30	c : 0.23	g : 0.15	
d : 0.30	c : 0.30	g : 0.15	] : 0.15	2 : 0.07	
d : 0.38	g : 0.15	c : 0.15	] : 0.15	2 : 0.07	3 : 0.07	
c : 0.30	g : 0.15	b : 0.15	e : 0.07	i : 0.07	] : 0.07	d : 0.07	3 : 0.07	
c : 0.30	g : 0.15	d : 0.15	b : 0.15	e : 0.07	i : 0.07	3 : 0.07	
g : 0.23	c : 0.23	d : 0.15	] : 0.15	e : 0.07	i : 0.07	: : 0.07	

#score	114.61149771209232
#seq	13
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_CDS_m2_run1.txt

#BEAR
eee!!dddd[ddddoooooodddd]dddd22e	chr1:169509893-169510141(-)$1	248	52	84	11.1100
iiiiiiii[ccc[annnnna]ccc]iiiiiii	chr16:23080029-23080296(-)$1	267	114	146	13.9434
ccc!!ccc[bbcccooooooccc333bb]ccc	chr1:24981432-24981702(+)$1	270	20	52	13.0065
"dddd!!a"""cccooooooccca22dddd55	chr3:124731782-124732070(-)$1	288	241	273	11.9895
ffffff####ddddnnnnndddd333ffffff	chrX:53622044-53622303(-)$1	259	226	258	12.9045
!!ggggggg[ddddnnnnnddddggggggg22	chr8:128752641-128752898(+)$1	257	51	83	13.7834
gggggg"""eeeeennnnneeeee333ggggg	chr18:47017800-47018003(-)$1	203	47	79	12.8091
[ggggggg[ddddoooooodddd]ggggggg3	chr11:95825274-95825562(-)$1	288	40	72	13.1663
fffff!!ccc[cccnnnnncccccc22fffff	chr2:216251480-216251701(-)$1	221	143	175	12.0426
dd[bb[ccc[cccooooooccc]ccc]bb]dd	chr1:154229486-154229755(+)$1	269	216	248	12.3352
dddd!!ccc[cccooooooccc]ccc22dddd	chr3:78734933-78735168(-)$1	235	45	77	12.0050
gggggggbb[cccooooooccc]bb333gggg	chr7:103197336-103197591(-)$1	255	23	55	13.4260
[bb[a[a####ddddmmmmdddda]a]bbccc	chr11:64882084-64882315(+)$1	231	193	225	10.6309
iiiiiii"""a!!ccclllccc22a]iiiiii	chr2:21225711-21225931(-)$1	220	24	56	13.4667
HHH==========oooooo==========fff	chr12:9224905-9225130(-)$1	225	7	39	11.3603
ffffdddd"""cccmmmmccc333dddd]fff	chr9:74332841-74333095(-)$1	254	160	192	10.9727
!!bb!!==========lll==========22b	chr7:139281362-139281586(-)$1	224	159	191	11.9515
!bb[ccc"""ddddoooooodddd]ccc]bb]	chr17:37866511-37866766(+)$1	255	58	90	12.6523
g!!bbbbgggggggnnnnnggggggg]bb333	chr8:22277028-22277275(+)$1	247	130	162	11.6927
c####ccc!!cccooooooccc333ccc4444	chr1:169510282-169510571(-)$1	289	126	158	15.6550
iiiiiiii"""cccnnnnnccc]iiiiiiiii	chr2:216236924-216237145(-)$1	221	182	214	16.3170
gggggggbb[cccooooooccc22bb22gggg	chr11:61569777-61570030(-)$1	253	3	35	12.7984
####ggggggg[bbnnnnnbb]ggggggg333	chr16:72828112-72828363(-)$1	251	181	213	13.0396
b!!a[dddd[cccooooooccc]dddd22a22	chr12:53860904-53861140(+)$1	236	17	49	12.2294
###a[ccc"""cccooooooccc]ccca4444	chr16:81077850-81078123(+)$1	273	208	240	15.0583
:ggggggg!!ddddmmmmdddd333ggggggg	chr7:103234714-103235015(-)$1	301	169	201	11.4792
"""eeeee"""cccmmmmccc4444eeeee44	chr21:38538454-38538692(+)$1	238	15	47	12.1162
cc!!dddd"""ddddoooooodddddddd333	chr2:21228853-21229061(-)$1	208	76	108	11.7917
iiiiiiiiieeeeennnnneeeee333iiiii	chr3:169846563-169846838(-)$1	275	24	56	12.5179
dd"""ccc"""ddddmmmmdddd22ccc333d	chr13:45913570-45913790(-)$1	220	146	178	12.3988
iiiiiiii"""cccnnnnnccc]iiiiiiiii	chr2:216236765-216236995(-)$1	230	32	64	16.3170
ddd####bb[ddddnnnnndddd333bb333d	chr17:60024185-60024475(-)$1	290	65	97	13.1194
ggggg[dddd!!bboooooobb]dddd]gggg	chr4:110394092-110394390(+)$1	298	39	71	10.8378
ebb[ggggggg[bbnnnnnbbggggggg]bb4	chr7:103155688-103155935(-)$1	247	119	151	11.0188
dd[eeeee"""cccmmmmccc333eeeee]dd	chr2:21233795-21234004(-)$1	209	129	161	11.1925
!!dddd[ccc[cccnnnnnccc333ccc22dd	chr2:136409448-136409703(+)$1	255	87	119	13.8499
dd!!gggggggcccnnnnnccc]ggggggg22	chr16:52484123-52484472(-)$1	349	141	173	14.1686
d"""ccc"""ddddnnnnndddd333ccc444	chr2:174819605-174819857(-)$1	252	201	233	15.3262
ggg!!ccc!!ddddnnnnnddddcccgggggg	chr5:77711243-77711539(+)$1	296	202	234	14.0740
ggggggg$$$$$bbnnnnnbb22gggggggdd	chr1:114510995-114511252(+)$1	257	20	52	12.1469
iiiiiiiii!!cccmmmmccciiiiiiiii]c	chr21:34805040-34805279(+)$1	239	131	163	12.7437
iiiiiiii"""cccnnnnnccc333iiiiiii	chr19:6718170-6718387(-)$1	217	25	57	17.0232
eeeee[bb"""cccnnnnnccc333bbeeeee	chr3:126261275-126261549(+)$1	274	17	49	13.7244
eeeedddd!!cccooooooccc22dddd>>>>	chr17:65941913-65942126(+)$1	213	129	161	11.8095
f!!ccc!!a[cccooooooccc]a]ccc22ff	chr2:21234335-21234557(-)$1	222	37	69	14.0953
ggggg[ccc"""bbmmmmbb]ccc]ggggggg	chr3:52559123-52559343(-)$1	220	146	178	10.8297
ggggggg[bb[a[ccclllccc]abbgggggg	chr1:24021102-24021317(+)$1	215	6	38	10.9291
""cccbb"""ddddnnnnnddddbb]ccc444	chr1:150939449-150939661(-)$1	212	119	151	13.0628
g!!ccceeeee[cccmmmmccc]eeeee333c	chr2:223806158-223806416(+)$1	258	197	229	10.4614
======$$$$$cccnnnnnccc4444======	chr16:71884293-71884544(+)$1	251	61	93	15.6512

#otherMatches

#Seq PSSM
AGACCUUGGUGAGACAGAUCUUUCCCCAAACU	chr1:169509893-169510141(-)$1	248	52	84	11.1100
AGGGGCAGUGGACGGCAUUCAUCCCCUGCCCC	chr16:23080029-23080296(-)$1	267	114	146	13.9434
GGAAAACUCGUAGGUUAUCUCCUUCAGCAAGU	chr1:24981432-24981702(+)$1	270	20	52	13.0065
CUCUGGUCACUGGCCCUAUAGCCGUACAGACU	chr3:124731782-124732070(-)$1	288	241	273	11.9895
CUUAAAAUGGAGUGUGAGCCACUGAAUUUGAG	chrX:53622044-53622303(-)$1	259	226	258	12.9045
GGCAGGCUCCUGGCAAAAGGUCAGAGUCUGGA	chr8:128752641-128752898(+)$1	257	51	83	13.7834
AGGUGAUCUGUGAAAAUGGUUCGCUAUUCACU	chr18:47017800-47018003(-)$1	203	47	79	12.8091
CUUUGUUUCAUUUUAACUCAGAUCAAGCGAAC	chr11:95825274-95825562(-)$1	288	40	72	13.1663
GUGGGAGACCUCGAGAAGAUCGGGUGCCCCAC	chr2:216251480-216251701(-)$1	221	143	175	12.0426
CUCGACUCGAAGCUCAGUUGCUACGACUUCAG	chr1:154229486-154229755(+)$1	269	216	248	12.3352
GGAACCUAACAAUUAACCUAUUUUUAUUUUCC	chr3:78734933-78735168(-)$1	235	45	77	12.0050
UCCAUCAGUGGAGGAAUCACUUGGCACCUGAU	chr7:103197336-103197591(-)$1	255	23	55	13.4260
UACGUGGGUGAUGCCCUCUGGCACGAGGUGAG	chr11:64882084-64882315(+)$1	231	193	225	10.6309
GUUCCAGAAAGCAGCCAGUGGCACCACUGGGA	chr2:21225711-21225931(-)$1	220	24	56	13.4667
GGAAAGGGCAAAAAACUGAUUUUGUCUUUGAU	chr12:9224905-9225130(-)$1	225	7	39	11.3603
GCUCAUUGCUUUUAAAAAUAAUGAUAAUGGAG	chr9:74332841-74333095(-)$1	254	160	192	10.9727
CCGGGAGGGUUUGCAUUGUGUGCAGAUCUGAC	chr7:139281362-139281586(-)$1	224	159	191	11.9515
AAGCCAGCCACCUGUCCCCCCAGGCCUGCCUC	chr17:37866511-37866766(+)$1	255	58	90	12.6523
UCACCAUCAUGGUGGUCCUCACCAUGUAUUCA	chr8:22277028-22277275(+)$1	247	130	162	11.6927
UCUCCAGAACUCAGCCAUAUGACUCUCUCUCC	chr1:169510282-169510571(-)$1	289	126	158	15.6550
CUGGCACUUCUGGUCAGCAACCCAGUGUUGGG	chr2:216236924-216237145(-)$1	221	182	214	16.3170
AGAUGGAAGAAGGCCUUAACCUCACUGCUCCA	chr11:61569777-61570030(-)$1	253	3	35	12.7984
UAAGCCCUUCCUCCAUUAAGGUGGAAGGGAUU	chr16:72828112-72828363(-)$1	251	181	213	13.0396
GACCUGCAUUUUCAAAUUCGAAUGUGCUUGAG	chr12:53860904-53861140(+)$1	236	17	49	12.2294
AGAGAGUGAACUUAGCACCAUGACCACCGAGC	chr16:81077850-81078123(+)$1	273	208	240	15.0583
GUGGGCAGUCGAUGACAUCAUCAUUCUGUCCG	chr7:103234714-103235015(-)$1	301	169	201	11.4792
UACGUAUCUUCCUUUCCAGAGAUUUGAUAUCA	chr21:38538454-38538692(+)$1	238	15	47	12.1162
CAAAGCCACCCUGGAACUCUCUCCAUGGCAAA	chr2:21228853-21229061(-)$1	208	76	108	11.7917
GCAGUCUGCCUUGGUAUCCCCAGGCCAGCAGA	chr3:169846563-169846838(-)$1	275	24	56	12.5179
CAAAAACUACCAGGUAAAUACCUUAAGUAUCU	chr13:45913570-45913790(-)$1	220	146	178	12.3988
CUGGCACUUCUGGUCAGCAACCCAGUGUUGGG	chr2:216236765-216236995(-)$1	230	32	64	16.3170
GCUGACUGAUUGAUUACCUGUUACCUUCUUAG	chr17:60024185-60024475(-)$1	290	65	97	13.1194
UGUGGAUGAAAUAGUUUCUUCUCUUCAGUUGC	chr4:110394092-110394390(+)$1	298	39	71	10.8378
UGACGGCCUGGAUCAGAACGACUGGGCCAUUG	chr7:103155688-103155935(-)$1	247	119	151	11.0188
GUCUAGGAAAAGCAUCAGUGCAGCUCUUGAAC	chr2:21233795-21234004(-)$1	209	129	161	11.1925
CUCUGGUCAUCCUGUCAGCCAGCCUGUGCUCC	chr2:136409448-136409703(+)$1	255	87	119	13.8499
AGUCUCAGCUCAGCGCCCAGUUGGGGUUGAAU	chr16:52484123-52484472(-)$1	349	141	173	14.1686
UAUAGAUUCUGCUGGUAUACAGCUACAUCCAG	chr2:174819605-174819857(-)$1	252	201	233	15.3262
AGUUCAUGUUAGUUGUAUAAAUUCAUAUUGGC	chr5:77711243-77711539(+)$1	296	202	234	14.0740
UGGAAGGCCAAGGACUGAAUCAUCUUUCCAUG	chr1:114510995-114511252(+)$1	257	20	52	12.1469
AGAAGAGGUACGUGUGCACACAUCUCuuuuuu	chr21:34805040-34805279(+)$1	239	131	163	12.7437
CCACCUUCGGGACCCAAGUGGUGGAGAAGGUG	chr19:6718170-6718387(-)$1	217	25	57	17.0232
UCCCGCGACCUGGCAGCGCGCCUCUUCCGGGA	chr3:126261275-126261549(+)$1	274	17	49	13.7244
GGACAAACUUUAAAUCAAGUUACUGUUUCAUC	chr17:65941913-65942126(+)$1	213	129	161	11.8095
UGACAUGAUGGGCUCAUAUGCUGAAAUGAAAU	chr2:21234335-21234557(-)$1	222	37	69	14.0953
GGGGGAGGGCCAGGAAACCCCCCCCCCCCCGC	chr3:52559123-52559343(-)$1	220	146	178	10.8297
GAAGAUGACAAGGAAUGUUAUUGCUGCAUUUU	chr1:24021102-24021317(+)$1	215	6	38	10.9291
UUCCUCAAAUCUAGAGACCCUGGUGCAGGUUC	chr1:150939449-150939661(-)$1	212	119	151	13.0628
UGUAUGGAAGAAAAUAAUUAUUCUCUUCUGGC	chr2:223806158-223806416(+)$1	258	197	229	10.4614
GCUGGGUAUACUUUGCAUGAAACCCCUCCAGC	chr16:71884293-71884544(+)$1	251	61	93	15.6512

#DB
(((..((((.((((......)))).))))..)	chr1:169509893-169510141(-)$1	1	52	84	11.1100
((((((((.(((.(.....).))).)))))))	chr16:23080029-23080296(-)$1	1	114	146	13.9434
(((..(((.(((((......)))...)).)))	chr1:24981432-24981702(+)$1	1	20	52	13.0065
.((((..(...(((......))))..))))..	chr3:124731782-124732070(-)$1	1	241	273	11.9895
((((((....((((.....))))...))))))	chrX:53622044-53622303(-)$1	1	226	258	12.9045
..(((((((.((((.....)))))))))))..	chr8:128752641-128752898(+)$1	1	51	83	13.7834
((((((...(((((.....)))))...)))))	chr18:47017800-47018003(-)$1	1	47	79	12.8091
.(((((((.((((......)))).))))))).	chr11:95825274-95825562(-)$1	1	40	72	13.1663
(((((..(((.(((.....))))))..)))))	chr2:216251480-216251701(-)$1	1	143	175	12.0426
((.((.(((.(((......))).))).)).))	chr1:154229486-154229755(+)$1	1	216	248	12.3352
((((..(((.(((......))).)))..))))	chr3:78734933-78735168(-)$1	1	45	77	12.0050
(((((((((.(((......))).))...))))	chr7:103197336-103197591(-)$1	1	23	55	13.4260
.((.(.(....((((....))))).).)))))	chr11:64882084-64882315(+)$1	1	193	225	10.6309
(((((((...(..(((...)))..).))))))	chr2:21225711-21225931(-)$1	1	24	56	13.4667
(((((((((((((......))))))))))(((	chr12:9224905-9225130(-)$1	1	7	39	11.3603
((((((((...(((....)))...)))).)))	chr9:74332841-74333095(-)$1	1	160	192	10.9727
..((..((((((((((...))))))))))..)	chr7:139281362-139281586(-)$1	1	159	191	11.9515
.((.(((...((((......)))).))).)).	chr17:37866511-37866766(+)$1	1	58	90	12.6523
(..(((((((((((.....))))))).))...	chr8:22277028-22277275(+)$1	1	130	162	11.6927
(....(((..(((......)))...)))....	chr1:169510282-169510571(-)$1	1	126	158	15.6550
((((((((...(((.....))).)))))))))	chr2:216236924-216237145(-)$1	1	182	214	16.3170
(((((((((.(((......)))..))..))))	chr11:61569777-61570030(-)$1	1	3	35	12.7984
....(((((((.((.....)).)))))))...	chr16:72828112-72828363(-)$1	1	181	213	13.0396
(..(.((((.(((......))).))))..)..	chr12:53860904-53861140(+)$1	1	17	49	12.2294
...(.(((...(((......))).))))....	chr16:81077850-81078123(+)$1	1	208	240	15.0583
.(((((((..((((....))))...)))))))	chr7:103234714-103235015(-)$1	1	169	201	11.4792
...(((((...(((....)))....)))))..	chr21:38538454-38538692(+)$1	1	15	47	12.1162
((..((((...((((......))))))))...	chr2:21228853-21229061(-)$1	1	76	108	11.7917
((((((((((((((.....)))))...)))))	chr3:169846563-169846838(-)$1	1	24	56	12.5179
((...(((...((((....))))..)))...)	chr13:45913570-45913790(-)$1	1	146	178	12.3988
((((((((...(((.....))).)))))))))	chr2:216236765-216236995(-)$1	1	32	64	16.3170
(((....((.((((.....))))...))...)	chr17:60024185-60024475(-)$1	1	65	97	13.1194
(((((.((((..((......)).)))).))))	chr4:110394092-110394390(+)$1	1	39	71	10.8378
(((.(((((((.((.....))))))))).)).	chr7:103155688-103155935(-)$1	1	119	151	11.0188
((.(((((...(((....)))...))))).))	chr2:21233795-21234004(-)$1	1	129	161	11.1925
..((((.(((.(((.....)))...)))..))	chr2:136409448-136409703(+)$1	1	87	119	13.8499
((..((((((((((.....))).)))))))..	chr16:52484123-52484472(-)$1	1	141	173	14.1686
(...(((...((((.....))))...)))...	chr2:174819605-174819857(-)$1	1	201	233	15.3262
(((..(((..((((.....)))))))))))))	chr5:77711243-77711539(+)$1	1	202	234	14.0740
(((((((.....((.....))..)))))))))	chr1:114510995-114511252(+)$1	1	20	52	12.1469
(((((((((..(((....)))))))))))).)	chr21:34805040-34805279(+)$1	1	131	163	12.7437
((((((((...(((.....)))...)))))))	chr19:6718170-6718387(-)$1	1	25	57	17.0232
(((((.((...(((.....)))...)))))))	chr3:126261275-126261549(+)$1	1	17	49	13.7244
((((((((..(((......)))..))))....	chr17:65941913-65942126(+)$1	1	129	161	11.8095
(..(((..(.(((......))).).)))..))	chr2:21234335-21234557(-)$1	1	37	69	14.0953
(((((.(((...((....)).))).)))))))	chr3:52559123-52559343(-)$1	1	146	178	10.8297
(((((((.((.(.(((...))).)))))))))	chr1:24021102-24021317(+)$1	1	6	38	10.9291
..(((((...((((.....)))))).)))...	chr1:150939449-150939661(-)$1	1	119	151	13.0628
(..((((((((.(((....))).)))))...)	chr2:223806158-223806416(+)$1	1	197	229	10.4614
((((((.....(((.....)))....))))))	chr16:71884293-71884544(+)$1	1	61	93	15.6512

#PSSM
g : 0.19	i : 0.14	d : 0.14	e : 0.08	f : 0.08	! : 0.08	c : 0.06	" : 0.06	[ : 0.04	# : 0.04	H : 0.02	b : 0.02	: : 0.02	= : 0.02	
g : 0.19	i : 0.14	d : 0.14	! : 0.14	e : 0.06	f : 0.06	b : 0.06	# : 0.06	" : 0.06	c : 0.04	H : 0.02	= : 0.02	
g : 0.21	i : 0.14	! : 0.12	d : 0.08	b : 0.08	e : 0.06	f : 0.06	# : 0.06	" : 0.06	c : 0.04	[ : 0.04	H : 0.02	= : 0.02	
g : 0.19	i : 0.14	! : 0.10	e : 0.08	d : 0.06	f : 0.06	b : 0.06	[ : 0.06	# : 0.06	c : 0.06	= : 0.04	a : 0.04	" : 0.04	
g : 0.25	i : 0.14	! : 0.10	d : 0.10	c : 0.10	e : 0.06	f : 0.04	b : 0.04	= : 0.04	# : 0.04	[ : 0.04	a : 0.02	" : 0.02	
g : 0.21	c : 0.18	i : 0.14	d : 0.12	[ : 0.10	! : 0.08	= : 0.04	b : 0.04	e : 0.04	f : 0.02	# : 0.02	
c : 0.19	g : 0.19	i : 0.14	d : 0.12	! : 0.06	b : 0.06	e : 0.06	# : 0.04	= : 0.04	" : 0.02	a : 0.02	[ : 0.02	$ : 0.02	
c : 0.19	g : 0.14	d : 0.12	i : 0.12	" : 0.10	b : 0.08	e : 0.06	# : 0.04	= : 0.04	$ : 0.04	a : 0.02	! : 0.02	[ : 0.02	
" : 0.32	g : 0.10	c : 0.10	b : 0.08	! : 0.08	d : 0.06	[ : 0.06	# : 0.04	= : 0.04	i : 0.04	$ : 0.04	a : 0.02	e : 0.02	
" : 0.32	[ : 0.18	! : 0.10	g : 0.08	c : 0.06	e : 0.06	b : 0.04	# : 0.04	d : 0.04	= : 0.04	$ : 0.04	
" : 0.23	d : 0.19	c : 0.18	g : 0.08	e : 0.06	[ : 0.06	= : 0.04	! : 0.04	$ : 0.04	b : 0.02	# : 0.02	a : 0.02	
c : 0.48	d : 0.25	[ : 0.06	e : 0.04	! : 0.04	= : 0.04	g : 0.02	$ : 0.02	" : 0.02	a : 0.02	
c : 0.48	d : 0.25	b : 0.10	[ : 0.04	e : 0.04	= : 0.04	! : 0.02	g : 0.02	
c : 0.36	d : 0.23	o : 0.19	b : 0.10	e : 0.04	a : 0.02	= : 0.02	g : 0.02	
n : 0.42	o : 0.32	m : 0.12	d : 0.06	c : 0.06	= : 0.02	
n : 0.42	o : 0.34	m : 0.18	c : 0.04	= : 0.02	
n : 0.42	o : 0.34	m : 0.18	l : 0.06	
n : 0.42	o : 0.34	m : 0.18	l : 0.06	
n : 0.42	o : 0.34	c : 0.08	m : 0.06	l : 0.06	d : 0.02	b : 0.02	
c : 0.46	d : 0.19	o : 0.14	b : 0.08	e : 0.04	= : 0.04	a : 0.02	g : 0.02	
c : 0.52	d : 0.23	b : 0.08	] : 0.04	e : 0.04	= : 0.04	g : 0.02	o : 0.02	
c : 0.48	d : 0.25	e : 0.04	= : 0.04	3 : 0.04	g : 0.04	] : 0.02	4 : 0.02	b : 0.02	2 : 0.02	i : 0.02	
d : 0.23	] : 0.21	3 : 0.14	c : 0.12	2 : 0.08	g : 0.06	e : 0.04	= : 0.04	4 : 0.04	i : 0.02	
3 : 0.21	c : 0.12	g : 0.12	d : 0.10	a : 0.08	2 : 0.08	e : 0.06	i : 0.06	] : 0.04	b : 0.04	= : 0.04	4 : 0.04	
3 : 0.21	g : 0.14	] : 0.12	c : 0.10	d : 0.10	b : 0.08	i : 0.06	2 : 0.04	= : 0.04	4 : 0.04	e : 0.04	a : 0.02	
g : 0.18	c : 0.18	3 : 0.14	d : 0.12	i : 0.10	b : 0.06	e : 0.06	2 : 0.04	] : 0.04	= : 0.04	a : 0.02	4 : 0.02	
g : 0.19	c : 0.16	d : 0.14	i : 0.12	b : 0.06	3 : 0.06	2 : 0.06	] : 0.06	= : 0.06	e : 0.06	f : 0.02	
g : 0.21	i : 0.14	c : 0.14	d : 0.10	b : 0.10	e : 0.08	2 : 0.06	= : 0.06	f : 0.04	3 : 0.02	a : 0.02	] : 0.02	
g : 0.25	i : 0.14	d : 0.08	] : 0.08	b : 0.06	= : 0.06	2 : 0.06	e : 0.06	3 : 0.06	f : 0.04	4 : 0.04	c : 0.04	> : 0.02	
g : 0.23	i : 0.14	3 : 0.12	2 : 0.08	f : 0.08	4 : 0.08	c : 0.04	d : 0.04	] : 0.04	b : 0.04	e : 0.04	a : 0.02	> : 0.02	= : 0.02	
g : 0.18	i : 0.12	3 : 0.12	2 : 0.10	f : 0.10	d : 0.10	4 : 0.10	c : 0.04	b : 0.04	5 : 0.02	] : 0.02	e : 0.02	> : 0.02	= : 0.02	
g : 0.16	d : 0.14	i : 0.12	4 : 0.12	f : 0.10	c : 0.08	3 : 0.08	2 : 0.06	e : 0.04	5 : 0.02	b : 0.02	] : 0.02	> : 0.02	= : 0.02	

#score	643.0339884921781
#seq	50
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_CDS_m1_run2.txt

#BEAR
gggggg"""a!!ddddmmmmdddd22a22ggggggg	chr5:179248459-179248763(+)$1	304	153	189	16.1984
Ddddd"""bba!!ddddllldddd22a]bb333ddd	chr19:39926387-39926637(-)$1	250	209	245	11.6895
gggggg!!bb!!ddddmmmmdddd22bb22gggggg	chr1:24021128-24021350(+)$1	222	9	45	15.2216
hhhhhhh!!a[eeeeemmmmeeeee]a22hhhhhhh	chr1:33245616-33245872(-)$1	256	177	213	11.6304
!!a[ccc"""ffffffmmmmffffff]ccca22eee	chr7:129710476-129710753(+)$1	277	102	138	11.2402
[ccc!!a[bb[eeeeemmmmeeeee]bb]a22ccc]	chr19:6739617-6739884(+)$1	267	118	154	13.8795
ggggccc[ccc[cccccclllccc22ccc]cccccc	chr2:54197729-54198042(-)$1	313	154	190	10.6974
###eeeeebb[cccooooooccc333bb]eeeee44	chr20:30156917-30157233(+)$1	316	126	162	11.2336
gggg[ffffff[ddddmmmmddddffffffgggggg	chr3:9876819-9877103(+)$1	284	182	218	12.0157
Hdddd[eeeeeeeeeemmmmeeeee4444eeeee33	chr20:62331672-62331952(-)$1	280	46	82	11.7039
d!!bb!!dddd[ddddmmmmdddd]dddd22bb22d	chr1:173454457-173454681(+)$1	224	81	117	11.3001
ddd!!dddd"""ddddllldddd333dddd22dddd	chr19:12845216-12845497(-)$1	281	143	179	11.7675
e!!eeeee####ddddlllddddeeeee]eeeee]b	chr6:33258440-33258690(+)$1	250	92	128	11.3504
effffff!!ccc!!bbmmmmbb22ccc333ffffff	chr20:2639049-2639343(-)$1	294	123	159	11.0981
bb"""dddd!!eeeeemmmmeeeee4444dddd22b	chr17:47841225-47841494(-)$1	269	60	96	12.1573
cc####dddd!!ddddmmmmdddd22dddd22ccc]	chr19:54711164-54711400(+)$1	236	33	69	13.4351
ccc===========[bbmmmmbb22===========	chr1:32670688-32670986(+)$1	298	9	45	11.8747
ffffff!!bb!!ddddmmmmdddd22bb22ffffff	chr1:24021097-24021303(+)$1	206	40	76	13.5116
gccc####ccc[ddddmmmmdddd]ccc4444ccc8	chr19:34890529-34890790(+)$1	261	77	113	14.5745
ddd[==========bbmmmmbb4444==========	chr14:75520199-75520459(-)$1	260	76	112	13.6826
eeee!!a[ccc[ddddmmmmdddd]ccc]a22eeee	chr17:34171836-34172128(+)$1	292	77	113	14.5831
=========!!eeeeemmmmeeeee==========:	chr11:64084820-64085088(-)$1	268	127	163	14.0587
ffffff[ccc"""ddddlllddddccc22ffffff:	chr12:56552367-56552571(+)$1	204	53	89	10.4914
cc[a[ccc!!bb[ddddllldddd]bb]ccc]a]cc	chr12:6879062-6879266(+)$1	204	165	201	11.8982
ddd[ccc[bb####bbmmmmbb333bbccc]dddde	chr1:154918406-154918727(-)$1	321	225	261	11.7859
gggggg"""ggggggglllggggggg]ggggggg33	chr17:38153986-38154296(+)$1	310	115	151	11.7844
ggggggg####ffffffmmmmffffff22ggggggg	chr16:417342-417677(-)$1	335	293	329	10.7198
ee"""bb[bb[eeeeemmmmeeeee]bb]bbeeeee	chr1:44443564-44443901(+)$1	337	203	239	12.7605
cbb[bb[dddd[ddddoooooodddd333dddd333	chr3:48664404-48664747(-)$1	343	55	91	10.9119
"""dddd[bb[eeeeemmmmeeeeebb]dddd4444	chr19:49377457-49377721(+)$1	264	30	66	11.9521
eeccc####gggggggmmmmggggggg333ccc]ee	chr7:26232017-26232242(-)$1	225	29	65	13.6623
gggggg"""ggggggglllggggggg]ggggggg33	chr17:38153915-38154176(+)$1	261	186	222	11.7844
e"""ccc!!ccc[cccmmmmccc]ccc22ccc333e	chr19:1103987-1104239(+)$1	252	92	128	13.6316
"""iiiiiiiii[cccmmmmccciiiiiiiii4444	chr22:24967874-24968160(+)$1	286	129	165	13.4470
ddd####a[a!!acccooooooccc]a22a]a22dd	chr3:48481753-48481968(+)$1	215	85	121	12.2577
eeeeeeeee[aeeeeemmmmeeeee]a]eeeee444	chr7:22852596-22852884(-)$1	288	205	241	12.1527
eeeeeeeccc!!ddddllldddd22ccc333eeeee	chr2:98264358-98264605(+)$1	247	26	62	12.6456
ddd[ccc[ccceeeeemmmmeeeee333ccc22ccc	chr15:66180065-66180333(+)$1	268	125	161	13.6019
$$$ccc[bb!!cccbbmmmmbb]ccc4444bb]ccc	chr13:48668992-48669264(-)$1	272	103	139	11.0069
ccca[bb!!a[eeeeemmmmeeeee]a22bb]a]cc	chr5:137682541-137682794(+)$1	253	17	53	13.7163
=[ffffff!!bbddddmmmmdddd333bb22fffff	chr9:140004992-140005274(-)$1	282	158	194	12.1580
ccc[bb####ddddoooooodddd22bbcccddddc	chr15:66795742-66795968(-)$1	226	112	148	11.6336
ggg[bb$$$$$eeeeemmmmeeeee4444bb]gggg	chr16:4393107-4393367(-)$1	260	206	242	13.3932
dddd"""bb!!ddddnnnnndddd22bb333dddd3	chr6:32942272-32942499(+)$1	227	169	205	11.6656
eeeee[==========mmmm==========22eeee	chr3:51422724-51422965(+)$1	241	66	102	13.4705
bb[eeeee!!bbddddmmmmdddd]bb4444eeeee	chr12:6879242-6879478(+)$1	236	62	98	12.6605
=========="""bboooooobb333==========	chr19:581244-581506(+)$1	262	28	64	13.3235
ee####dddda[ddddmmmmdddd22a]dddd4444	chr19:1104636-1104868(+)$1	232	184	220	13.5475
ccccceeeee!!ddddnnnnndddd4444eeeee]c	chr6:43738641-43738911(+)$1	270	166	202	10.9625
=========="""cccmmmmccc]===========:	chr20:34246769-34247037(-)$1	268	107	143	14.1643
ddd[ccc[bb!!cccooooooccc]bb]ccc]dddd	chr12:56552054-56552289(+)$1	235	114	150	11.8204
ggggggg$$$$$cccooooooccc4444ggggggg]	chr22:29194979-29195237(-)$1	258	186	222	12.4590
[a[ggggggg[eeeeemmmmeeeee]ggggggg]a]	chr14:68117819-68118154(-)$1	335	81	117	13.3755
eeee!!a[ccc[ddddmmmmdddd]ccc]a22eeee	chr17:34171749-34172036(+)$1	287	164	200	14.5831
ddd[bb[ccc"""cccmmmmccc333cccbb]dddd	chr19:55644148-55644425(-)$1	277	231	267	13.1409
gggggg!!bb!!cccmmmmccc333bb22ggggggg	chr19:38899392-38899751(+)$1	359	14	50	12.8677
eeeee[bb[ccc[ddddllldddd]ccc]bb]eeee	chr10:73578282-73578523(-)$1	241	65	101	11.2974
:==========####ammmma333==========hh	chr22:39131818-39132156(-)$1	338	209	245	12.5326
dddd####ccceeeeemmmmeeeee]ccc22dddd2	chr17:7214614-7214838(+)$1	224	58	94	12.7841
eeccc####gggggggmmmmggggggg333ccc]ee	chr7:26232042-26232270(-)$1	228	57	93	13.6623
=========bb[bboooooobb]bb4444=======	chr1:2125335-2125601(-)$1	266	80	116	11.2795

#otherMatches

#Seq PSSM
GCGGGUAAACAAGCGCGGGGGUGCGGGGGACUCGCG	chr5:179248459-179248763(+)$1	304	153	189	16.1984
UCGGUGGGCAGGAAUCUAGGGGGUAACAUGGGAGCU	chr19:39926387-39926637(-)$1	250	209	245	11.6895
UUUUCUCCACAGGUGCGGGAGUAUGAGUUAAGAAAA	chr1:24021128-24021350(+)$1	222	9	45	15.2216
GUGCUUCUAUGUGAGUGAGGACUUGGAGUGGGGCAC	chr1:33245616-33245872(-)$1	256	177	213	11.6304
gggcagcgggggucgggggACUGGCCAGCUCAACCG	chr7:129710476-129710753(+)$1	277	102	138	11.2402
gugcggugguggcugcggcggcggcggcggGAGCAG	chr19:6739617-6739884(+)$1	267	118	154	13.8795
cccccggagccgggcgggcgucccgagccgggcccg	chr2:54197729-54198042(-)$1	313	154	190	10.6974
UCAGGGCCAGACCAGACAGAUGGGGGCUGGGCCCAC	chr20:30156917-30157233(+)$1	316	126	162	11.2336
GGAUAUGAAGCUAGGGAAGCCCCUGCUUCGAUUCCC	chr3:9876819-9877103(+)$1	284	182	218	12.0157
GCCUCACACCCGCUGUCUUCACAGCAAAGGGGUGCG	chr20:62331672-62331952(-)$1	280	46	82	11.7039
UUACCUUUUCCCAUCAUCGAUGAUAGGAAUCGGGAG	chr1:173454457-173454681(+)$1	224	81	117	11.3001
ggggacgaggaggugucgggcgcgggUUCGAGCCCG	chr19:12845216-12845497(-)$1	281	143	179	11.7675
UCAGAGCAACAGAGGGAGACCCUUGCUCAGCUGCAG	chr6:33258440-33258690(+)$1	250	92	128	11.3504
AUUGUUAGGAUGGAGCCCAGGCCACAUGGAUGAUGA	chr20:2639049-2639343(-)$1	294	123	159	11.0981
gcgggcggcagaggcggaggugccugggggccgggg	chr17:47841225-47841494(-)$1	269	60	96	12.1573
AGUGGUGCGGUAGCUGGGGUUAGCGUCCGUUUCUCC	chr19:54711164-54711400(+)$1	236	33	69	13.4351
CCCUUUGCACAGGUGAGGGAACUAAACCUGUGCAAG	chr1:32670688-32670986(+)$1	298	9	45	11.8747
UUUUCUCCACAGGUGCGGGAGUAUGAGUUAAGAAAA	chr1:24021097-24021303(+)$1	206	40	76	13.5116
GUCUGUCACUUCUGCAGCCAUGUAUGAGCACAAGAU	chr19:34890529-34890790(+)$1	261	77	113	14.5745
CUCUCUUUUUACCCCCCUUAGGCUGAGGGUAAAAAG	chr14:75520199-75520459(-)$1	260	76	112	13.6826
UGGCAGUGGCUACGGUGGAGACCGAAGUGGAGGCUA	chr17:34171836-34172128(+)$1	292	77	113	14.5831
UGCGGGGGGUGGGGUCCCGUGGCUUCCCCCUGCGCC	chr11:64084820-64085088(-)$1	268	127	163	14.0587
GGGGGAUUGGCGUUCAGAUGCUGACCACUUCCCUCU	chr12:56552367-56552571(+)$1	204	53	89	10.4914
GUGGGUUUGAAGACCUGAAGCAGGGCUGAGGGCGAC	chr12:6879062-6879266(+)$1	204	165	201	11.8982
UCCUCUGGAGAAAAGCAGAAGCAACCUCGGUGGAGG	chr1:154918406-154918727(-)$1	321	225	261	11.7859
AGUUCUGUGUACUCCUUUAGGGAGUGGGGGACUAGA	chr17:38153986-38154296(+)$1	310	115	151	11.7844
AUCUUUGCUUUGAGGACUGGUGUUCUCUUUGGGGAU	chr16:417342-417677(-)$1	335	293	329	10.7198
GGCUUGGUGUUCAGGGCCCUCCCUGCACUCCCCUCU	chr1:44443564-44443901(+)$1	337	203	239	12.7605
GCACAUCUGGGUGUGCCCUCCUGCAUGUCCCCACAC	chr3:48664404-48664747(-)$1	343	55	91	10.9119
CCCCACCAAGUGCCUUCCUGAAGGCCUGGGUGUAUU	chr19:49377457-49377721(+)$1	264	30	66	11.9521
GUUCCAACAAUUAUAGGAAACUAUGGUCCAGGAGGC	chr7:26232017-26232242(-)$1	225	29	65	13.6623
AGUUCUGUGUACUCCUUUAGGGAGUGGGGGACUAGA	chr17:38153915-38154176(+)$1	261	186	222	11.7844
CGCUGCUCUGUGGGGCUCUGGCCGCGCCUGGCCUGG	chr19:1103987-1104239(+)$1	252	92	128	13.6316
AGUGGGUGCUUGUGCAUAUAUGCUAGGUAUCUUUUG	chr22:24967874-24968160(+)$1	286	129	165	13.4470
CCCAAGAAGCAGGCCAAGGAGAUGGACgaggugagg	chr3:48481753-48481968(+)$1	215	85	121	12.2577
CAAGGCUCUUCACAGACGCAUCUGUAGCAGAGUGGA	chr7:22852596-22852884(-)$1	288	205	241	12.1527
GAGGAAAAGAAAUUCAUGUUGAAAGUCUCCCUUUCU	chr2:98264358-98264605(+)$1	247	26	62	12.6456
CUCCCCUAGAAGGCUGUGUAUAGUCCAUUUCCCAGG	chr15:66180065-66180333(+)$1	268	125	161	13.6019
GGGAGUGGCGGGUGGUAACAGCACACGAGAGCGGCU	chr13:48668992-48669264(-)$1	272	103	139	11.0069
GUGCGGUGGGGUCGGCAGGCGCUGAGCAAGCGGACA	chr5:137682541-137682794(+)$1	253	17	53	13.7163
CCAGACUCAGCCUCUGAGCACAGGACUGGAGGGGUC	chr9:140004992-140005274(-)$1	282	158	194	12.1580
CCCACUGAUAUCGGUGUACUCCGAAAAGGGGGAGUC	chr15:66795742-66795968(-)$1	226	112	148	11.6336
GUCAGAUUUUCCCCGUAGCCAUGGGCACCUCAGGCC	chr16:4393107-4393367(-)$1	260	206	242	13.3932
AGCUGCAAUACCUACACAAGGUAGUGAUGAAGGCUC	chr6:32942272-32942499(+)$1	227	169	205	11.6656
CACGCAGGGGCUGGCGGUGGCGCUGGCUCUGAGCGU	chr3:51422724-51422965(+)$1	241	66	102	13.4705
CCAUUUCUGGCUCCUCAGAUGAGGAAGAAGAAGAAG	chr12:6879242-6879478(+)$1	236	62	98	12.6605
GACUGGGGGUCCUGGACUCAGCCCUUGCCUUUGGUC	chr19:581244-581506(+)$1	262	28	64	13.3235
CGGAAGGCCCCAGCGUGCAGGCGCAGGAGGGCGCGG	chr19:1104636-1104868(+)$1	232	184	220	13.5475
AGGCGGCGGUGUGCGCAGACAGUGCUCCAGCCGCGC	chr6:43738641-43738911(+)$1	270	166	202	10.9625
AGUUGGUUUUAAUUGGUUGCCCACAGGAUUGACUUG	chr20:34246769-34247037(-)$1	268	107	143	14.1643
AGAGCUGAGCAGUCAAGAUGGUGGGGCCCAGGUCUU	chr12:56552054-56552289(+)$1	235	114	150	11.8204
AGAAGAGGUAAAACUACUUAAGGUCAAACUCUUUUA	chr22:29194979-29195237(-)$1	258	186	222	12.4590
GAACUUUGACCUUGUGAAUGCAUGAUGUUAGGGAUG	chr14:68117819-68118154(-)$1	335	81	117	13.3755
UGGCAGUGGCUACGGUGGAGACCGAAGUGGAGGCUA	chr17:34171749-34172036(+)$1	287	164	200	14.5831
CUGGGUUCUCUGAUGUUAUUAUGGUUGAGAUGCAGC	chr19:55644148-55644425(-)$1	277	231	267	13.1409
UUCCAGACCGGGGGGGCCGCCCAAAUGAGCUGGAGC	chr19:38899392-38899751(+)$1	359	14	50	12.8677
CCAUAAGCCCUUGUUGGGAACUGAGAAGUGUAUAUG	chr10:73578282-73578523(-)$1	241	65	101	11.2974
GCUGGUGCCUGGGAGCUGAUGAAGCAGGUGCCAGGG	chr22:39131818-39132156(-)$1	338	209	245	12.5326
UUGGCAUCCAGGAUGGGUACCUAUCACUGCUCCAGG	chr17:7214614-7214838(+)$1	224	58	94	12.7841
GUUCCAACAAUUAUAGGAAACUAUGGUCCAGGAGGC	chr7:26232042-26232270(-)$1	228	57	93	13.6623
GCUCUGGGCCGAGCUACUGCGCACGGUGAGCCCGGA	chr1:2125335-2125601(-)$1	266	80	116	11.2795

#DB
((((((...(..((((....))))..)..)))))))	chr5:179248459-179248763(+)$1	1	153	189	16.1984
)((((...(((..((((...))))..).))...)))	chr19:39926387-39926637(-)$1	1	209	245	11.6895
((((((..((..((((....))))..))..))))))	chr1:24021128-24021350(+)$1	1	9	45	15.2216
(((((((..(.(((((....))))).)..)))))))	chr1:33245616-33245872(-)$1	1	177	213	11.6304
..(.(((...((((((....)))))).))))..)))	chr7:129710476-129710753(+)$1	1	102	138	11.2402
.(((..(.((.(((((....))))).)).)..))).	chr19:6739617-6739884(+)$1	1	118	154	13.8795
(((((((.(((.((((((...)))..))).))))))	chr2:54197729-54198042(-)$1	1	154	190	10.6974
...(((((((.(((......)))...)).)))))..	chr20:30156917-30157233(+)$1	1	126	162	11.2336
((((.((((((.((((....))))))))))))))))	chr3:9876819-9877103(+)$1	1	182	218	12.0157
(((((.((((((((((....)))))....)))))..	chr20:62331672-62331952(-)$1	1	46	82	11.7039
(..((..((((.((((....)))).))))..))..)	chr1:173454457-173454681(+)$1	1	81	117	11.3001
(((..((((...((((...))))...))))..))))	chr19:12845216-12845497(-)$1	1	143	179	11.7675
(..(((((....((((...))))))))).))))).)	chr6:33258440-33258690(+)$1	1	92	128	11.3504
(((((((..(((..((....))..)))...))))))	chr20:2639049-2639343(-)$1	1	123	159	11.0981
((...((((..(((((....)))))....))))..)	chr17:47841225-47841494(-)$1	1	60	96	12.1573
((....((((..((((....))))..))))..))).	chr19:54711164-54711400(+)$1	1	33	69	13.4351
((((((((((((((.((....))..)))))))))))	chr1:32670688-32670986(+)$1	1	9	45	11.8747
((((((..((..((((....))))..))..))))))	chr1:24021097-24021303(+)$1	1	40	76	13.5116
((((....(((.((((....)))).)))....))).	chr19:34890529-34890790(+)$1	1	77	113	14.5745
(((.((((((((((((....))....))))))))))	chr14:75520199-75520459(-)$1	1	76	112	13.6826
((((..(.(((.((((....)))).))).)..))))	chr17:34171836-34172128(+)$1	1	77	113	14.5831
(((((((((..(((((....))))))))))))))).	chr11:64084820-64085088(-)$1	1	127	163	14.0587
((((((.(((...((((...)))))))..)))))).	chr12:56552367-56552571(+)$1	1	53	89	10.4914
((.(.(((..((.((((...)))).)).))).).))	chr12:6879062-6879266(+)$1	1	165	201	11.8982
(((.(((.((....((....))...))))).)))))	chr1:154918406-154918727(-)$1	1	225	261	11.7859
((((((...(((((((...))))))).)))))))..	chr17:38153986-38154296(+)$1	1	115	151	11.7844
(((((((....((((((....))))))..)))))))	chr16:417342-417677(-)$1	1	293	329	10.7198
((...((.((.(((((....))))).)).)))))))	chr1:44443564-44443901(+)$1	1	203	239	12.7605
(((.((.((((.((((......))))...))))...	chr3:48664404-48664747(-)$1	1	55	91	10.9119
...((((.((.(((((....))))))).))))....	chr19:49377457-49377721(+)$1	1	30	66	11.9521
(((((....(((((((....)))))))...))).))	chr7:26232017-26232242(-)$1	1	29	65	13.6623
((((((...(((((((...))))))).)))))))..	chr17:38153915-38154176(+)$1	1	186	222	11.7844
(...(((..(((.(((....))).)))..)))...)	chr19:1103987-1104239(+)$1	1	92	128	13.6316
...(((((((((.(((....))))))))))))....	chr22:24967874-24968160(+)$1	1	129	165	13.4470
(((....(.(..((((......))).)..).)..))	chr3:48481753-48481968(+)$1	1	85	121	12.2577
(((((((((.((((((....))))).).)))))...	chr7:22852596-22852884(-)$1	1	205	241	12.1527
))((((((((..((((...))))..)))...)))))	chr2:98264358-98264605(+)$1	1	26	62	12.6456
(((.(((.((((((((....)))))...)))..)))	chr15:66180065-66180333(+)$1	1	125	161	13.6019
...(((.((..(((((....)).)))....)).)))	chr13:48668992-48669264(-)$1	1	103	139	11.0069
((((.((..(.(((((....))))).)..)).).))	chr5:137682541-137682794(+)$1	1	17	53	13.7163
(.((((((..((((((....))))...))..)))))	chr9:140004992-140005274(-)$1	1	158	194	12.1580
(((.((....((((......))))..))))))))))	chr15:66795742-66795968(-)$1	1	112	148	11.6336
(((.((.....(((((....)))))....)).))))	chr16:4393107-4393367(-)$1	1	206	242	13.3932
((((...((..((((.....))))..))...)))).	chr6:32942272-32942499(+)$1	1	169	205	11.6656
(((((.((((((((((....))))))))))..))))	chr3:51422724-51422965(+)$1	1	66	102	13.4705
((.(((((..((((((....)))).))....)))))	chr12:6879242-6879478(+)$1	1	62	98	12.6605
((((((((((...((......))...))))))))))	chr19:581244-581506(+)$1	1	28	64	13.3235
((....(((((.((((....))))..).))))....	chr19:1104636-1104868(+)$1	1	184	220	13.5475
((((((((((..((((.....))))....))))).)	chr6:43738641-43738911(+)$1	1	166	202	10.9625
((((((((((...(((....))).))))))))))).	chr20:34246769-34247037(-)$1	1	107	143	14.1643
(((.(((.((..(((......))).)).))).))))	chr12:56552054-56552289(+)$1	1	114	150	11.8204
(((((((.....(((......)))....))))))).	chr22:29194979-29195237(-)$1	1	186	222	12.4590
.(.(((((((.(((((....))))).))))))).).	chr14:68117819-68118154(-)$1	1	81	117	13.3755
((((..(.(((.((((....)))).))).)..))))	chr17:34171749-34172036(+)$1	1	164	200	14.5831
(((.((.(((...(((....)))...))))).))))	chr19:55644148-55644425(-)$1	1	231	267	13.1409
((((((..((..(((....)))...))..)))))))	chr19:38899392-38899751(+)$1	1	14	50	12.8677
(((((.((.(((.((((...)))).))).)).))))	chr10:73578282-73578523(-)$1	1	65	101	11.2974
.((((((((((....(....)...))))))))))((	chr22:39131818-39132156(-)$1	1	209	245	12.5326
((((....((((((((....))))).)))..)))).	chr17:7214614-7214838(+)$1	1	58	94	12.7841
(((((....(((((((....)))))))...))).))	chr7:26232042-26232270(-)$1	1	57	93	13.6623
(((((((((((.((......)).))....)))))))	chr1:2125335-2125601(-)$1	1	80	116	11.2795

#PSSM
e : 0.21	g : 0.18	d : 0.16	c : 0.11	= : 0.08	[ : 0.03	b : 0.03	f : 0.03	" : 0.03	D : 0.01	h : 0.01	! : 0.01	# : 0.01	H : 0.01	$ : 0.01	: : 0.01	
d : 0.18	g : 0.16	e : 0.16	c : 0.13	= : 0.08	! : 0.04	f : 0.04	b : 0.04	" : 0.04	h : 0.01	# : 0.01	$ : 0.01	[ : 0.01	a : 0.01	
d : 0.18	g : 0.16	c : 0.13	e : 0.09	" : 0.08	= : 0.08	f : 0.06	# : 0.04	[ : 0.04	! : 0.03	h : 0.01	a : 0.01	b : 0.01	$ : 0.01	
g : 0.16	[ : 0.14	e : 0.14	c : 0.09	= : 0.09	d : 0.08	f : 0.06	" : 0.04	# : 0.04	a : 0.03	h : 0.01	b : 0.01	! : 0.01	i : 0.01	
c : 0.16	g : 0.13	e : 0.11	= : 0.11	b : 0.08	# : 0.08	! : 0.06	f : 0.06	d : 0.04	[ : 0.04	" : 0.04	h : 0.01	i : 0.01	
g : 0.13	c : 0.13	# : 0.11	= : 0.11	e : 0.09	b : 0.09	f : 0.08	! : 0.06	[ : 0.04	d : 0.04	" : 0.03	h : 0.01	i : 0.01	
= : 0.13	c : 0.11	e : 0.11	# : 0.09	" : 0.08	d : 0.08	! : 0.06	[ : 0.06	a : 0.04	f : 0.04	g : 0.04	b : 0.04	h : 0.01	i : 0.01	$ : 0.01	
[ : 0.14	= : 0.13	! : 0.11	e : 0.09	d : 0.09	# : 0.09	" : 0.08	c : 0.06	b : 0.04	f : 0.03	$ : 0.03	i : 0.01	a : 0.01	g : 0.01	
b : 0.19	c : 0.14	= : 0.13	! : 0.11	d : 0.09	# : 0.08	" : 0.06	e : 0.04	[ : 0.03	$ : 0.03	f : 0.01	i : 0.01	g : 0.01	
c : 0.19	b : 0.18	! : 0.11	= : 0.09	g : 0.08	a : 0.06	d : 0.06	# : 0.04	" : 0.03	e : 0.03	$ : 0.03	f : 0.01	i : 0.01	[ : 0.01	
! : 0.21	c : 0.14	[ : 0.11	" : 0.08	= : 0.06	b : 0.06	g : 0.06	a : 0.04	d : 0.04	# : 0.04	f : 0.03	$ : 0.03	e : 0.01	i : 0.01	
e : 0.21	! : 0.16	[ : 0.14	c : 0.08	" : 0.08	g : 0.06	# : 0.04	= : 0.04	b : 0.04	f : 0.03	d : 0.03	i : 0.01	$ : 0.01	
d : 0.31	e : 0.21	c : 0.09	" : 0.06	[ : 0.06	g : 0.06	= : 0.04	! : 0.03	f : 0.03	# : 0.03	a : 0.01	b : 0.01	
d : 0.37	e : 0.21	c : 0.18	g : 0.06	= : 0.04	f : 0.03	# : 0.03	b : 0.03	! : 0.01	
d : 0.36	e : 0.21	c : 0.14	b : 0.08	g : 0.06	o : 0.04	f : 0.03	[ : 0.01	= : 0.01	# : 0.01	
d : 0.34	e : 0.21	c : 0.09	o : 0.09	b : 0.08	g : 0.06	f : 0.03	n : 0.01	= : 0.01	m : 0.01	a : 0.01	
m : 0.63	o : 0.13	l : 0.08	d : 0.06	n : 0.03	c : 0.01	b : 0.01	f : 0.01	
m : 0.67	l : 0.14	o : 0.13	n : 0.03	c : 0.01	
m : 0.67	l : 0.16	o : 0.13	n : 0.03	
m : 0.65	o : 0.13	l : 0.08	d : 0.04	g : 0.03	n : 0.03	c : 0.01	
d : 0.34	e : 0.21	c : 0.09	b : 0.08	o : 0.08	g : 0.06	m : 0.03	f : 0.01	l : 0.01	= : 0.01	n : 0.01	a : 0.01	
d : 0.36	e : 0.21	c : 0.14	b : 0.11	g : 0.06	f : 0.03	o : 0.03	= : 0.01	3 : 0.01	
d : 0.37	e : 0.21	c : 0.14	g : 0.06	3 : 0.04	f : 0.03	b : 0.03	] : 0.03	2 : 0.01	4 : 0.01	= : 0.01	
d : 0.32	e : 0.22	3 : 0.11	c : 0.08	g : 0.06	2 : 0.04	f : 0.03	] : 0.03	4 : 0.01	i : 0.01	= : 0.01	b : 0.01	
e : 0.22	2 : 0.18	] : 0.13	3 : 0.11	c : 0.08	g : 0.06	f : 0.04	= : 0.04	4 : 0.03	d : 0.03	i : 0.01	b : 0.01	
2 : 0.14	c : 0.14	] : 0.13	4 : 0.11	3 : 0.09	b : 0.09	= : 0.08	g : 0.06	f : 0.04	d : 0.03	e : 0.01	i : 0.01	
b : 0.21	c : 0.18	a : 0.11	4 : 0.11	= : 0.11	] : 0.04	d : 0.04	3 : 0.04	g : 0.04	f : 0.03	e : 0.01	i : 0.01	
c : 0.16	2 : 0.13	b : 0.13	4 : 0.13	= : 0.11	] : 0.09	3 : 0.08	d : 0.04	g : 0.04	f : 0.01	e : 0.01	i : 0.01	
2 : 0.16	c : 0.14	4 : 0.13	] : 0.11	= : 0.11	3 : 0.09	d : 0.08	g : 0.06	b : 0.03	f : 0.01	i : 0.01	e : 0.01	
= : 0.13	g : 0.11	c : 0.11	b : 0.09	d : 0.09	2 : 0.08	e : 0.08	3 : 0.08	a : 0.06	4 : 0.04	f : 0.03	h : 0.01	] : 0.01	i : 0.01	
g : 0.14	2 : 0.14	c : 0.13	= : 0.11	b : 0.09	e : 0.08	d : 0.06	3 : 0.04	f : 0.04	4 : 0.03	] : 0.03	h : 0.01	a : 0.01	i : 0.01	
g : 0.14	2 : 0.13	e : 0.13	d : 0.13	= : 0.11	] : 0.09	c : 0.06	f : 0.06	b : 0.03	3 : 0.01	h : 0.01	4 : 0.01	i : 0.01	a : 0.01	
e : 0.19	g : 0.16	d : 0.14	= : 0.11	c : 0.09	f : 0.06	2 : 0.04	4 : 0.04	3 : 0.03	a : 0.03	h : 0.01	b : 0.01	] : 0.01	
e : 0.19	g : 0.14	d : 0.13	= : 0.11	c : 0.09	] : 0.08	f : 0.06	4 : 0.06	2 : 0.04	3 : 0.03	h : 0.01	
e : 0.16	d : 0.14	c : 0.13	g : 0.11	= : 0.09	4 : 0.08	3 : 0.08	f : 0.06	h : 0.03	2 : 0.03	] : 0.03	a : 0.01	
e : 0.19	c : 0.11	g : 0.09	d : 0.09	4 : 0.08	3 : 0.08	] : 0.06	= : 0.06	f : 0.04	: : 0.04	h : 0.03	b : 0.03	8 : 0.01	2 : 0.01	

#score	765.899531100177
#seq	61
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_CDS_m3_run1.txt

#BEAR
::DDDDffffff!!ddddllldddd333fffff	chr2:175006448-175006754(-)$1	306	4	37	22.1518
::::::ffffffddddoooooodddd]ffffff	chrM:8402-8617(+)$1	215	118	151	24.6935
::::::ffffffddddoooooodddd]ffffff	chrM:8382-8602(+)$1	220	138	171	24.6935

#otherMatches

#Seq PSSM
GCUUCCCUUUAAUUCAUUUUAGGUGCUUUUGAA	chr2:175006448-175006754(-)$1	306	4	37	22.1518
AACCAAAAUGAACGAAAAUCUGUUCGCUUCAUU	chrM:8402-8617(+)$1	215	118	151	24.6935
AACCAAAAUGAACGAAAAUCUGUUCGCUUCAUU	chrM:8382-8602(+)$1	220	138	171	24.6935

#DB
..((((((((((..((((...))))...)))))	chr2:175006448-175006754(-)$1	1	4	37	22.1518
......((((((((((......)))).))))))	chrM:8402-8617(+)$1	1	118	151	24.6935
......((((((((((......)))).))))))	chrM:8382-8602(+)$1	1	138	171	24.6935

#PSSM
: : 1.00	
: : 1.00	
: : 0.66	D : 0.33	
: : 0.66	D : 0.33	
: : 0.66	D : 0.33	
: : 0.66	D : 0.33	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
d : 0.66	! : 0.33	
d : 0.66	! : 0.33	
d : 1.00	
d : 1.00	
o : 0.66	d : 0.33	
o : 0.66	d : 0.33	
o : 0.66	l : 0.33	
o : 0.66	l : 0.33	
o : 0.66	l : 0.33	
o : 0.66	d : 0.33	
d : 1.00	
d : 1.00	
d : 1.00	
d : 0.66	3 : 0.33	
] : 0.66	3 : 0.33	
f : 0.66	3 : 0.33	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	

#score	71.538935862
#seq	3
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_transcript_m3_run1.txt

#BEAR
ddffffffvvvvvvvvvvvvvffffffi	chrX:130958695-130958953(-)$1	258	141	169	24.1632
####ddddtttttttttttddddggggg	chr22:22210603-22210833(-)$1	230	113	141	23.9738
ddd[ddddvvvvvvvvvvvvvdddd]dd	chr6:30582329-30582604(-)$1	275	36	64	24.3806
fff[eeeeettttttttttteeeeefff	chr8:142249525-142249800(-)$1	275	127	155	23.7163
ccc[ddddtttttttttttdddd]ccc]	chr2:201934115-201934392(-)$1	277	5	33	23.9872
ccffffffwwwwwwwwwwwwwwffffff	chr11:65271754-65271963(+)$1	209	143	171	22.8967
ggbb[awwwwwwwwwwwwwwa]bb]ggg	chr16:11825408-11825693(-)$1	285	95	123	21.4196
ddffffffuuuuuuuuuuuuffffff44	chrX:39940076-39940346(-)$1	270	39	67	23.7367
####ddddtttttttttttddddggggg	chr22:22210565-22210803(-)$1	238	83	111	23.9738
ddd[ddddtttttttttttdddd]dddd	chr5:86595366-86595633(+)$1	267	144	172	22.8215
!!ffffffuuuuuuuuuuuuffffff]e	chr13:95827113-95827413(-)$1	300	55	83	24.3739
iiiiiiiiyyyyyyyyyyyyyyyyiiii	chr12:80320828-80321101(-)$1	273	64	92	21.3942
ffffdddduuuuuuuuuuuudddd::ee	chr3:176848862-176849150(-)$1	288	192	220	22.0718
c[a[dddduuuuuuuuuuuudddd]a]c	chr7:127410693-127410975(+)$1	282	71	99	24.9972
%gggggggwwwwwwwwwwwwwwgggggg	chr12:57504932-57505224(-)$1	292	129	157	22.9934
ee[eeeeeuuuuuuuuuuuueeeeeeee	chr12:132480427-132480651(+)$1	224	109	137	24.4840
a[ddddbbtttttttttttbb]dddda]	chr2:242242861-242243177(-)$1	316	80	108	22.1102
ccc[eeeeettttttttttteeeeeccc	chr2:128253922-128254177(-)$1	255	78	106	24.1680
hhhheeeeettttttttttteeeee22h	chr5:90099718-90100018(+)$1	300	129	157	22.3529
::ffffffvvvvvvvvvvvvvffffff:	chr6:36034409-36034697(+)$1	288	179	207	21.8884
!!ffffffwwwwwwwwwwwwwwffffff	chr11:85684667-85685009(-)$1	342	183	211	23.1832
Bgggggggvvvvvvvvvvvvvggggggg	chr17:40415714-40416018(-)$1	304	241	269	24.3306
b!!eeeeewwwwwwwwwwwwwweeeee2	chr6:159195542-159195842(-)$1	300	25	53	23.2599
==[eeeeevvvvvvvvvvvvveeeee>>	chr15:57258570-57258882(+)$1	312	237	265	24.6515
:ccc[cccuuuuuuuuuuuuccc]ccc:	chr2:172289485-172289779(-)$1	294	2	30	23.0323
iiiiiiiiitttttttttttiiiiiiii	chr4:20705016-20705284(+)$1	268	20	48	23.3878
!!eeeeevvvvvvvvvvvvveeeee]ff	chr1:90380486-90380765(+)$1	279	6	34	24.7602
========uuuuuuuuuuuu========	chr1:109642849-109643054(+)$1	205	77	105	25.2237
eee[cccwwwwwwwwwwwwwwccceeee	chr7:129564298-129564574(-)$1	276	183	211	22.7793
ccc[bb[auuuuuuuuuuuua]bbccc]	chr5:10377295-10377573(+)$1	278	198	226	23.9950
b[ffffffyyyyyyyyyyyyyyyyffff	chr3:48038065-48038368(-)$1	303	222	250	20.9612
ccc[ddddvvvvvvvvvvvvvdddd]cc	chr17:42283703-42283981(-)$1	278	92	120	25.1649
""acccccctttttttttttccc]ccc]	chr7:75046303-75046583(-)$1	280	112	140	23.9059
!!ffffffvvvvvvvvvvvvvffffff]	chr17:40368999-40369250(-)$1	251	179	207	24.8415
#ggggggguuuuuuuuuuuugggggggd	chr1:2196884-2197172(+)$1	288	35	63	24.7576
c[eeeeevvvvvvvvvvvvveeeeeccc	chr2:242685330-242685608(+)$1	278	117	145	24.5697
cc[eeeeeuuuuuuuuuuuueeeee]cc	chr16:84160189-84160468(-)$1	279	20	48	25.1783
ddd[ccc[attttttttttta]cccddd	chr19:49411885-49412157(+)$1	272	243	271	23.4794
a:eeeeevvvvvvvvvvvvveeeee:ff	chr12:111015577-111015843(-)$1	266	164	192	22.4931
f"""ddddtttttttttttdddd333ff	chr5:65476474-65476730(+)$1	256	96	124	23.3972
========vvvvvvvvvvvvv=======	chr8:140842435-140842807(-)$1	372	176	204	25.3089
[gggggggvvvvvvvvvvvvvggggggg	chr16:18109665-18109929(-)$1	264	194	222	25.1162
a[bb[ccctttttttttttccc]bb]a3	chr9:100774602-100774805(+)$1	203	138	166	22.7296
:::eeeeewwwwwwwwwwwwwweeeee:	chr1:225136909-225137241(+)$1	332	276	304	19.7779
ccc[dddduuuuuuuuuuuuddddccc]	chr9:140583280-140583606(+)$1	326	162	190	25.1423
eeeee[ccctttttttttttccceeeee	chr10:52177218-52177487(-)$1	269	191	219	23.1320
Ibb[eeeeettttttttttteeeee]bb	chr5:61739140-61739421(+)$1	281	234	262	22.2298
ddd[dddduuuuuuuuuuuudddddddd	chr6:148062772-148063040(+)$1	268	129	157	23.9766
=========ttttttttttt========	chr5:53226949-53227204(-)$1	255	206	234	23.9651
bb"""cccwwwwwwwwwwwwwwccc]bb	chr7:50687453-50687739(-)$1	286	158	186	22.3985
fff[dddduuuuuuuuuuuuddddffff	chr19:29098111-29098359(+)$1	248	62	90	24.5765
####ddddtttttttttttddddggggg	chr22:22210511-22210756(-)$1	245	36	64	23.9738
hhhhhhhhuuuuuuuuuuuuhhhhhhhh	chr16:16112425-16112760(+)$1	335	135	163	21.5033
::ffffffuuuuuuuuuuuuffffff::	chr18:12695671-12695983(-)$1	312	232	260	20.6308

#otherMatches

#Seq PSSM
AUUGUGCUGAGGAAUGUGGGGAGUAUAU	chrX:130958695-130958953(-)$1	258	141	169	24.1632
uacugugccaaguuuuccagcaugagag	chr22:22210603-22210833(-)$1	230	113	141	23.9738
UUUUCCCCACUUCAGCUGCCAGGGGUGA	chr6:30582329-30582604(-)$1	275	36	64	24.3806
CUUUGCUCCUGCACCCUCCUGGAGUAAG	chr8:142249525-142249800(-)$1	275	127	155	23.7163
UGGAAUUCUGUAGUGUUUUGAGUACCAG	chr2:201934115-201934392(-)$1	277	5	33	23.9872
AAACGACUGGAGUAUGAUUAAAAGUUGU	chr11:65271754-65271963(+)$1	209	143	171	22.8967
UGGAAGAAUUGUGUUUAUCCCAUCACgu	chr16:11825408-11825693(-)$1	285	95	123	21.4196
CCACUUUUAAACAGUUCACAAAAAGUUC	chrX:39940076-39940346(-)$1	270	39	67	23.7367
uacugugccaaguuuuccagcaugagag	chr22:22210565-22210803(-)$1	238	83	111	23.9738
uggaaugcuucacaaauuugcaugucau	chr5:86595366-86595633(+)$1	267	144	172	22.8215
ACGUGGGUUCCUGAACGUUUACCCACCA	chr13:95827113-95827413(-)$1	300	55	83	24.3739
CUAAUAGCAAUUUAUAUCGUUUCAGUUG	chr12:80320828-80321101(-)$1	273	64	92	21.3942
CUGAAGAAGUUCUCAAUAUAUUCUCUGA	chr3:176848862-176849150(-)$1	288	192	220	22.0718
AGUUCUUUCAAUUAAAAAAAAAAGUGGU	chr7:127410693-127410975(+)$1	282	71	99	24.9972
uguguguguguguguguguguguaugua	chr12:57504932-57505224(-)$1	292	129	157	22.9934
AUACGAACGAAUCCACCACAGUUUGAUG	chr12:132480427-132480651(+)$1	224	109	137	24.4840
GUGUCACUUUUGUAUUCUUGGAUGACUG	chr2:242242861-242243177(-)$1	316	80	108	22.1102
aguacuugccaugaaugaaagcaggacu	chr2:128253922-128254177(-)$1	255	78	106	24.1680
GGCUAGGGCAUUUCAAAAUAGCCCUCUA	chr5:90099718-90100018(+)$1	300	129	157	22.3529
GAUCUUUUUGGAAAUAAUGGUGAAAGAA	chr6:36034409-36034697(+)$1	288	179	207	21.8884
UUAGUGGACUUGUUAUUCCCCUUUCACU	chr11:85684667-85685009(-)$1	342	183	211	23.1832
aguccaggaguucaagaucagccugggc	chr17:40415714-40416018(-)$1	304	241	269	24.3306
UUUUCAGAACACUUAUUAAAAAUUUGAC	chr6:159195542-159195842(-)$1	300	25	53	23.2599
GAUGUCCGACUACCAGAUACACGGACUG	chr15:57258570-57258882(+)$1	312	237	265	24.6515
uguguggaucuugccccuucuccccacg	chr2:172289485-172289779(-)$1	294	2	30	23.0323
AGGCUUCAUGGAAGUUGGGAAUGAAGCU	chr4:20705016-20705284(+)$1	268	20	48	23.3878
CCGUCUUUUCCAAACUACUUAAGAUAAG	chr1:90380486-90380765(+)$1	279	6	34	24.7602
CGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642849-109643054(+)$1	205	77	105	25.2237
GAUAGAGUUAUGACAUAAAAUCUCAUUU	chr7:129564298-129564574(-)$1	276	183	211	22.7793
ACAUGUGUUUUGUGGAGUUUAGGCUGUU	chr5:10377295-10377573(+)$1	278	198	226	23.9950
gucucuuggguuuagucauuuuaacagg	chr3:48038065-48038368(-)$1	303	222	250	20.9612
AUGGUCUUGAUGUAUGUGGAAGAGAGUA	chr17:42283703-42283981(-)$1	278	92	120	25.1649
CCCCUCCCCGUUGUGACUGAGGGCGAGU	chr7:75046303-75046583(-)$1	280	112	140	23.9059
CUGUUGGUAAACUGAAAAUGGACUGACC	chr17:40368999-40369250(-)$1	251	179	207	24.8415
uauuuuacucuuuuaaauauguggaaua	chr1:2196884-2197172(+)$1	288	35	63	24.7576
acguucuuuuucaucuccuuggaauuac	chr2:242685330-242685608(+)$1	278	117	145	24.5697
CAUCAAAGAUUUGAUUCAUCCUUUGCUG	chr16:84160189-84160468(-)$1	279	20	48	25.1783
UGCGUGCGGUAAGUGUGUGUUGGCAGCG	chr19:49411885-49412157(+)$1	272	243	271	23.4794
AUGUGCAACAAAAACUCCUCUGCAUGCU	chr12:111015577-111015843(-)$1	266	164	192	22.4931
UGGGUGCAUAUGGAAAGAUUGUGAAAGA	chr5:65476474-65476730(+)$1	256	96	124	23.3972
augcauguguguguauguguagcgugua	chr8:140842435-140842807(-)$1	372	176	204	25.3089
AUCUUCCUAACUCUCUACUCAAGGAAGG	chr16:18109665-18109929(-)$1	264	194	222	25.1162
GGAUGAGGAUGAAGGUGGGCCUAAUGCA	chr9:100774602-100774805(+)$1	203	138	166	22.7296
UUCCAGACUCUUGAUUUGUUUUGUCUGA	chr1:225136909-225137241(+)$1	332	276	304	19.7779
ACUGCUUGUUCUCCAUCCCCCAGGAGUG	chr9:140583280-140583606(+)$1	326	162	190	25.1423
CCAUAACUGUGCUUUCUAUUUAGUGUGG	chr10:52177218-52177487(-)$1	269	191	219	23.1320
agcacaggaguuugagaucauccugggc	chr5:61739140-61739421(+)$1	281	234	262	22.2298
ACCACGAAACACAAUUCUUCUUCGGGUG	chr6:148062772-148063040(+)$1	268	129	157	23.9766
GCUGUUUGCUAAUAGCAUACGUGAAUAG	chr5:53226949-53227204(-)$1	255	206	234	23.9651
UCCCUGCCUUCACGUGUAAUUCGGUUGA	chr7:50687453-50687739(-)$1	286	158	186	22.3985
UGGGCAACAGAUAGACAGUGGUUGCCGU	chr19:29098111-29098359(+)$1	248	62	90	24.5765
uacugugccaaguuuuccagcaugagag	chr22:22210511-22210756(-)$1	245	36	64	23.9738
ugcuuguguguCUCGGUAGUCAUAGGCA	chr16:16112425-16112760(+)$1	335	135	163	21.5033
CCUUUAAGUCAGAAAAGUUUCUUAAAAC	chr18:12695671-12695983(-)$1	312	232	260	20.6308

#DB
))((((((.............))))))(	chrX:130958695-130958953(-)$1	1	141	169	24.1632
....((((...........)))))))))	chr22:22210603-22210833(-)$1	1	113	141	23.9738
(((.((((.............)))).))	chr6:30582329-30582604(-)$1	1	36	64	24.3806
(((.(((((...........))))))))	chr8:142249525-142249800(-)$1	1	127	155	23.7163
(((.((((...........)))).))).	chr2:201934115-201934392(-)$1	1	5	33	23.9872
((((((((..............))))))	chr11:65271754-65271963(+)$1	1	143	171	22.8967
((((.(..............).)).)))	chr16:11825408-11825693(-)$1	1	95	123	21.4196
((((((((............))))))..	chrX:39940076-39940346(-)$1	1	39	67	23.7367
....((((...........)))))))))	chr22:22210565-22210803(-)$1	1	83	111	23.9738
(((.((((...........)))).))))	chr5:86595366-86595633(+)$1	1	144	172	22.8215
..((((((............)))))).)	chr13:95827113-95827413(-)$1	1	55	83	24.3739
((((((((................))))	chr12:80320828-80321101(-)$1	1	64	92	21.3942
))))((((............))))..((	chr3:176848862-176849150(-)$1	1	192	220	22.0718
(.(.((((............)))).).)	chr7:127410693-127410975(+)$1	1	71	99	24.9972
.(((((((..............))))))	chr12:57504932-57505224(-)$1	1	129	157	22.9934
((.(((((............))))))))	chr12:132480427-132480651(+)$1	1	109	137	24.4840
(.((((((...........)).))))).	chr2:242242861-242243177(-)$1	1	80	108	22.1102
(((.(((((...........))))))))	chr2:128253922-128254177(-)$1	1	78	106	24.1680
(((((((((...........)))))..)	chr5:90099718-90100018(+)$1	1	129	157	22.3529
..((((((.............)))))).	chr6:36034409-36034697(+)$1	1	179	207	21.8884
..((((((..............))))))	chr11:85684667-85685009(-)$1	1	183	211	23.1832
)(((((((.............)))))))	chr17:40415714-40416018(-)$1	1	241	269	24.3306
(..(((((..............))))).	chr6:159195542-159195842(-)$1	1	25	53	23.2599
((.(((((.............)))))..	chr15:57258570-57258882(+)$1	1	237	265	24.6515
.(((.(((............))).))).	chr2:172289485-172289779(-)$1	1	2	30	23.0323
(((((((((...........))))))))	chr4:20705016-20705284(+)$1	1	20	48	23.3878
..(((((.............))))).))	chr1:90380486-90380765(+)$1	1	6	34	24.7602
((((((((............))))))))	chr1:109642849-109643054(+)$1	1	77	105	25.2237
(((.(((..............)))))))	chr7:129564298-129564574(-)$1	1	183	211	22.7793
(((.((.(............).))))).	chr5:10377295-10377573(+)$1	1	198	226	23.9950
(.((((((................))))	chr3:48038065-48038368(-)$1	1	222	250	20.9612
(((.((((.............)))).))	chr17:42283703-42283981(-)$1	1	92	120	25.1649
..(((((((...........))).))).	chr7:75046303-75046583(-)$1	1	112	140	23.9059
..((((((.............)))))).	chr17:40368999-40369250(-)$1	1	179	207	24.8415
.(((((((............))))))))	chr1:2196884-2197172(+)$1	1	35	63	24.7576
(.(((((.............))))))))	chr2:242685330-242685608(+)$1	1	117	145	24.5697
((.(((((............))))).))	chr16:84160189-84160468(-)$1	1	20	48	25.1783
(((.(((.(...........).))))))	chr19:49411885-49412157(+)$1	1	243	271	23.4794
).(((((.............))))).((	chr12:111015577-111015843(-)$1	1	164	192	22.4931
(...((((...........))))...))	chr5:65476474-65476730(+)$1	1	96	124	23.3972
((((((((.............)))))))	chr8:140842435-140842807(-)$1	1	176	204	25.3089
.(((((((.............)))))))	chr16:18109665-18109929(-)$1	1	194	222	25.1162
(.((.(((...........))).)).).	chr9:100774602-100774805(+)$1	1	138	166	22.7296
...(((((..............))))).	chr1:225136909-225137241(+)$1	1	276	304	19.7779
(((.((((............))))))).	chr9:140583280-140583606(+)$1	1	162	190	25.1423
(((((.(((...........))))))))	chr10:52177218-52177487(-)$1	1	191	219	23.1320
)((.(((((...........))))).))	chr5:61739140-61739421(+)$1	1	234	262	22.2298
(((.((((............))))))))	chr6:148062772-148063040(+)$1	1	129	157	23.9766
(((((((((...........))))))))	chr5:53226949-53227204(-)$1	1	206	234	23.9651
((...(((..............))).))	chr7:50687453-50687739(-)$1	1	158	186	22.3985
(((.((((............))))))))	chr19:29098111-29098359(+)$1	1	62	90	24.5765
....((((...........)))))))))	chr22:22210511-22210756(-)$1	1	36	64	23.9738
((((((((............))))))))	chr16:16112425-16112760(+)$1	1	135	163	21.5033
..((((((............))))))..	chr18:12695671-12695983(-)$1	1	232	260	20.6308

#PSSM
c : 0.16	d : 0.11	# : 0.07	f : 0.07	! : 0.07	: : 0.07	= : 0.07	e : 0.05	a : 0.05	b : 0.05	i : 0.03	h : 0.03	g : 0.01	% : 0.01	B : 0.01	" : 0.01	[ : 0.01	I : 0.01	
c : 0.14	d : 0.11	g : 0.09	! : 0.09	[ : 0.09	: : 0.07	= : 0.07	# : 0.05	f : 0.05	e : 0.05	i : 0.03	h : 0.03	" : 0.03	b : 0.03	
f : 0.22	c : 0.11	d : 0.09	e : 0.09	g : 0.07	# : 0.05	b : 0.05	[ : 0.05	= : 0.05	i : 0.03	a : 0.03	h : 0.03	" : 0.03	! : 0.01	: : 0.01	
[ : 0.25	f : 0.18	e : 0.16	g : 0.07	# : 0.05	= : 0.05	b : 0.03	i : 0.03	h : 0.03	c : 0.03	" : 0.03	d : 0.01	
d : 0.25	e : 0.24	f : 0.16	g : 0.07	[ : 0.05	= : 0.05	c : 0.05	i : 0.03	b : 0.01	" : 0.01	h : 0.01	
d : 0.25	e : 0.22	f : 0.16	c : 0.11	g : 0.07	= : 0.05	i : 0.03	a : 0.01	b : 0.01	[ : 0.01	h : 0.01	
d : 0.24	e : 0.22	f : 0.16	c : 0.12	g : 0.07	= : 0.05	i : 0.03	w : 0.01	b : 0.01	[ : 0.01	h : 0.01	
d : 0.24	f : 0.16	e : 0.16	c : 0.09	g : 0.07	v : 0.05	= : 0.05	w : 0.03	i : 0.03	b : 0.01	a : 0.01	[ : 0.01	h : 0.01	
u : 0.27	v : 0.22	t : 0.14	w : 0.14	e : 0.07	y : 0.03	c : 0.03	i : 0.01	a : 0.01	= : 0.01	
t : 0.31	u : 0.27	v : 0.22	w : 0.14	y : 0.03	
t : 0.31	u : 0.27	v : 0.22	w : 0.14	y : 0.03	
t : 0.31	u : 0.27	v : 0.22	w : 0.14	y : 0.03	
t : 0.31	u : 0.27	v : 0.22	w : 0.14	y : 0.03	
t : 0.31	u : 0.27	v : 0.22	w : 0.14	y : 0.03	
t : 0.31	u : 0.27	v : 0.22	w : 0.14	y : 0.03	
t : 0.31	u : 0.27	v : 0.22	w : 0.14	y : 0.03	
t : 0.31	u : 0.27	v : 0.22	w : 0.14	y : 0.03	
t : 0.31	u : 0.27	v : 0.22	w : 0.14	y : 0.03	
t : 0.31	u : 0.27	v : 0.22	w : 0.14	y : 0.03	
u : 0.27	v : 0.22	t : 0.16	w : 0.14	d : 0.11	y : 0.03	b : 0.01	c : 0.01	
d : 0.20	v : 0.16	e : 0.16	w : 0.12	c : 0.07	a : 0.05	f : 0.05	y : 0.03	= : 0.03	b : 0.01	i : 0.01	g : 0.01	h : 0.01	
d : 0.24	e : 0.18	f : 0.11	w : 0.11	c : 0.09	] : 0.07	g : 0.05	= : 0.05	y : 0.03	i : 0.01	h : 0.01	
d : 0.25	e : 0.22	f : 0.14	c : 0.11	g : 0.07	= : 0.05	b : 0.03	y : 0.03	i : 0.01	] : 0.01	h : 0.01	
e : 0.24	f : 0.14	d : 0.14	g : 0.12	] : 0.07	b : 0.05	= : 0.05	c : 0.05	y : 0.03	i : 0.01	3 : 0.01	h : 0.01	
e : 0.25	f : 0.18	g : 0.12	c : 0.12	d : 0.09	= : 0.05	] : 0.03	i : 0.03	: : 0.01	3 : 0.01	b : 0.01	h : 0.01	
f : 0.20	g : 0.14	] : 0.12	c : 0.12	e : 0.11	d : 0.07	= : 0.05	i : 0.03	: : 0.03	a : 0.01	2 : 0.01	3 : 0.01	h : 0.01	
f : 0.20	c : 0.16	g : 0.14	e : 0.11	d : 0.07	= : 0.05	] : 0.03	i : 0.03	a : 0.03	b : 0.03	4 : 0.01	2 : 0.01	> : 0.01	h : 0.01	: : 0.01	
f : 0.14	g : 0.12	] : 0.11	d : 0.09	e : 0.09	c : 0.09	: : 0.07	i : 0.05	= : 0.05	h : 0.03	b : 0.03	4 : 0.01	2 : 0.01	> : 0.01	3 : 0.01	

#score	1267.7196439949903
#seq	54
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_transcript_m2_run1.txt

#BEAR
eeeee[ddddoooooodddd333ee	chr20:8364195-8364493(+)$1	298	225	250	14.9798
dddd!!ddddoooooodddd22ddd	chr11:70217524-70217765(+)$1	241	132	157	14.6990
""ddddddddoooooodddd]dddd	chr1:31461381-31461647(-)$1	266	149	174	14.5904
dd[a[eeeeeooooooeeeee]a]d	chr15:25307625-25307926(+)$1	301	120	145	13.6769
eeee[eeeeeooooooeeeee22ee	chr6:159047075-159047374(+)$1	299	108	133	13.0407
c"""ffffffooooooffffff]cc	chr2:236431127-236431420(+)$1	293	198	223	11.5241
fff!!eeeeeooooooeeeee22ff	chr15:25229496-25229789(+)$1	293	261	286	13.3142
Bdddd[ddddoooooodddd]dddd	chr2:218768717-218768982(-)$1	265	21	46	13.9200
"""a[eeeeeooooooeeeee]a22	chr6:168333082-168333336(+)$1	254	110	135	14.1190
fffffeeeeeooooooeeeee:ccc	chr5:52313322-52313602(+)$1	280	58	83	12.1939
""ccc[ddddoooooodddd]ccc2	chr1:20234805-20235177(+)$1	372	278	303	15.8377
(((bb[ddddoooooodddd]bb88	chr2:11414265-11414536(-)$1	271	92	117	11.9432
==========oooooo=========	chr10:28848129-28848393(+)$1	264	80	105	13.6358
!!ccc[ddddoooooodddd22ccc	chrY:2714961-2715302(+)$1	341	44	69	15.6675
b[bb"""cccooooooccc333bb]	chr10:21991824-21992095(+)$1	271	141	166	12.6063
"""a[eeeeeooooooeeeee]a33	chr20:61557200-61557452(-)$1	252	185	210	14.5692
ff[bb[ddddooooooddddbbfff	chr1:27022434-27022784(+)$1	350	212	237	13.5679
==========oooooo=========	chr8:13133170-13133493(-)$1	323	93	118	13.6358
:iiiiiiiiiooooooiiiiiiiii	chr5:14404075-14404377(+)$1	302	94	119	12.2213
ffff!!ddddooooooddddfffff	chr2:118846237-118846531(+)$1	294	70	95	14.3168
[bb!!eeeeeooooooeeeeebbee	chr13:113869348-113869720(+)$1	372	289	314	12.9317
::ccc[ddddoooooodddd22ccc	chrY:2714754-2715047(+)$1	293	251	276	13.6204
dd!!ccccccooooooccc]ccc22	chr19:34877329-34877648(+)$1	319	150	175	12.3984
!!gggggggaooooooa]ggggggg	chr21:46281381-46281704(-)$1	323	286	311	12.9490
[dddd[ddddoooooodddd]dddd	chr19:16985238-16985577(+)$1	339	80	105	14.7397
ccc####ddddnnnnndddd333cc	chr10:133789956-133790216(-)$1	260	9	34	9.9852
bb:bb[ddddoooooodddd]bb::	chrY:2719540-2719867(+)$1	327	199	224	11.4609
""ccc[ddddoooooodddd]ccc2	chr15:25309538-25309782(+)$1	244	103	128	15.8377
###ccc[cccooooooccccccddd	chr13:113866141-113866390(+)$1	249	157	182	12.7727
eeecccddddoooooodddd]ccc]	chr5:285639-285871(+)$1	232	140	165	14.9185
eeeee!!cccooooooccceeeee2	chr20:8360759-8361007(+)$1	248	210	235	12.3530
aa!!dddd[aooooooa]dddd22a	chr7:157168562-157168827(+)$1	265	84	109	12.9483
dddd!!ddddoooooodddd22ddd	chr11:70217493-70217724(+)$1	231	163	188	14.6990
$$$$a[ddddoooooodddd]a555	chr3:196997959-196998240(-)$1	281	153	178	12.8651
biiiiiiiiiooooooiiiiiiiii	chr1:212933433-212933675(-)$1	242	88	113	12.8637
dddeeeee[aooooooa]eeeee]d	chr20:34248953-34249203(-)$1	250	118	143	12.2024
:iiiiiiiiiooooooiiiiiiiii	chr16:89513310-89513611(-)$1	301	273	298	12.2213
eddddeeeeeooooooeeeee]ddd	chr12:104518943-104519157(+)$1	214	171	196	12.9160
========[aooooooa]=======	chr2:101767143-101767420(-)$1	277	233	258	13.4555
eeeee[ddddoooooodddd]eeee	chr21:46284775-46285068(-)$1	293	117	142	14.5085
fffffaddddoooooodddd]a]ff	chr5:1621395-1621793(-)$1	398	88	113	14.3172
!!ccc[ddddoooooodddd]cccc	chr2:149077726-149078056(+)$1	330	61	86	15.8639
fff!!eeeeeooooooeeeeeffff	chrX:17759345-17759662(+)$1	317	81	106	13.1977
dddcccddddoooooodddd]ccc]	chr11:129148908-129149245(-)$1	337	287	312	14.8788
:bb!!eeeeeooooooeeeee]bb:	chr19:23536191-23536497(-)$1	306	62	87	11.4616
""ddddddddoooooodddd]dddd	chr1:31461451-31461749(-)$1	298	251	276	14.5904
b"""ffffffooooooffffff333	chr2:42426175-42426409(+)$1	234	124	149	11.7469
cc####ddddoooooodddd22ccc	chr9:117026537-117026778(+)$1	241	6	31	15.2592
ggggggddddoooooodddd]gggg	chr7:23497951-23498265(-)$1	314	139	164	15.0421
ff[gggggggoooooogggggggff	chr22:50195593-50195843(-)$1	250	116	141	12.3923
ffff!!ddddooooooddddfffff	chr2:118846196-118846437(+)$1	241	111	136	14.3168

#otherMatches

#Seq PSSM
uuaugaagcuuaguuuggcuggaua	chr20:8364195-8364493(+)$1	298	225	250	14.9798
uguugggugguguguucuaugaaac	chr11:70217524-70217765(+)$1	241	132	157	14.6990
GAAGUCUCAGACAGUACUGAUGAUU	chr1:31461381-31461647(-)$1	266	149	174	14.5904
CUGUGAUGGCGUGGCGGCCAUGGAA	chr15:25307625-25307926(+)$1	301	120	145	13.6769
UGCUGCCAUUGGGGGAGAUGGGAGG	chr6:159047075-159047374(+)$1	299	108	133	13.0407
UGAAAGUUGUGUGAAGAUGGCUGAG	chr2:236431127-236431420(+)$1	293	198	223	11.5241
GUACUCUAGUCCUAAAAUUGGUUUA	chr15:25229496-25229789(+)$1	293	261	286	13.3142
GAUAGUGUGCUGUGUCGCACUUUGU	chr2:218768717-218768982(-)$1	265	21	46	13.9200
AAUAGCAGUCAGCGUGGACUGGUUA	chr6:168333082-168333336(+)$1	254	110	135	14.1190
ccaucgucacuuuuaugugacagca	chr5:52313322-52313602(+)$1	280	58	83	12.1939
AACUCCUGGGGUUUUGCCUAAGAGG	chr1:20234805-20235177(+)$1	372	278	303	15.8377
uuucauugauuuuguuguuguuguu	chr2:11414265-11414536(-)$1	271	92	117	11.9432
gcuuuuuuauguaacaaugaggaag	chr10:28848129-28848393(+)$1	264	80	105	13.6358
AGACUAUCGCAUAGUAGCGAGAAGU	chrY:2714961-2715302(+)$1	341	44	69	15.6675
gugguuugaguccuuucucuuucuu	chr10:21991824-21992095(+)$1	271	141	166	12.6063
GGCUGGCGCUGCAGGAAGCGCGAAG	chr20:61557200-61557452(-)$1	252	185	210	14.5692
GGAGCAGCUGAgccgccggcgccuc	chr1:27022434-27022784(+)$1	350	212	237	13.5679
GGUCAGCUUUGGAGCUGAAGCUGAU	chr8:13133170-13133493(-)$1	323	93	118	13.6358
ugcagcuugugagggugcagguugu	chr5:14404075-14404377(+)$1	302	94	119	12.2213
CGCAAGGUCCAGAAGGGGACUGCGG	chr2:118846237-118846531(+)$1	294	70	95	14.3168
UCUCAUCCAUGUGGCUGUGGAGGUC	chr13:113869348-113869720(+)$1	372	289	314	12.9317
AGACUAUCGCAUAGUAGCGAGAAGU	chrY:2714754-2715047(+)$1	293	251	276	13.6204
GUGAAGCCUGAAGAACCAGAGUUGA	chr19:34877329-34877648(+)$1	319	150	175	12.3984
GACGCGGGCCUUGGAUGAGUCCGUG	chr21:46281381-46281704(-)$1	323	286	311	12.9490
ugauuuggucugcucugaucugguc	chr19:16985238-16985577(+)$1	339	80	105	14.7397
CCAUGAGGUGCGGGUAGCAUgguug	chr10:133789956-133790216(-)$1	260	9	34	9.9852
GCUUAGUGAACCUCCUUUCAGUACC	chrY:2719540-2719867(+)$1	327	199	224	11.4609
UUUCUGGGCGAGUGAGUGUCGGGAU	chr15:25309538-25309782(+)$1	244	103	128	15.8377
ccucagucuguaacuuuagcugugc	chr13:113866141-113866390(+)$1	249	157	182	12.7727
cugauguucuaguuugagggccgug	chr5:285639-285871(+)$1	232	140	165	14.9185
caguaccaccuguuucgguuacugu	chr20:8360759-8361007(+)$1	248	210	235	12.3530
GCUUUUCUGUGCACUUGGGGAAUUG	chr7:157168562-157168827(+)$1	265	84	109	12.9483
uguugggugguguguucuaugaaac	chr11:70217493-70217724(+)$1	231	163	188	14.6990
GGAAAGCCCCAAGUGAGGGGGUGAG	chr3:196997959-196998240(-)$1	281	153	178	12.8651
cagggcagggcuaucccuuugcccu	chr1:212933433-212933675(-)$1	242	88	113	12.8637
ACUUGUAGCAUCAACUUUCUGCAUG	chr20:34248953-34249203(-)$1	250	118	143	12.2024
GCUGUCCCUGGAACUGCAGGGACAG	chr16:89513310-89513611(-)$1	301	273	298	12.2213
CAGgccgggcacaguggcucgugcc	chr12:104518943-104519157(+)$1	214	171	196	12.9160
AUCUGGAGGCGCCGGAGGCUCCAGG	chr2:101767143-101767420(-)$1	277	233	258	13.4555
GCAGCAGAGACUGCUUUCUCAGCUG	chr21:46284775-46285068(-)$1	293	117	142	14.5085
cugcgguucuagguugagggucgug	chr5:1621395-1621793(-)$1	398	88	113	14.3172
cuugucugguuucagugccauacag	chr2:149077726-149078056(+)$1	330	61	86	15.8639
gcucaggcgauaauccuugcuagcu	chrX:17759345-17759662(+)$1	317	81	106	13.1977
CUUCUUAAAAUAUUCUUUUUAGAGU	chr11:129148908-129149245(-)$1	337	287	312	14.8788
uguuugaauuuuauuuaguucugcu	chr19:23536191-23536497(-)$1	306	62	87	11.4616
GAAGUCUCAGACAGUACUGAUGAUU	chr1:31461451-31461749(-)$1	298	251	276	14.5904
UAAGGGCUUGGGGUUAUGGGCCAAG	chr2:42426175-42426409(+)$1	234	124	149	11.7469
GCCCCAGGCUUGGAGCAGCCCCGCC	chr9:117026537-117026778(+)$1	241	6	31	15.2592
GGUAUCUGGAGUGGAGUCCACGGUG	chr7:23497951-23498265(-)$1	314	139	164	15.0421
AGAUCUUGGGUCUUAUCUCGGGGCU	chr22:50195593-50195843(-)$1	250	116	141	12.3923
CGCAAGGUCCAGAAGGGGACUGCGG	chr2:118846196-118846437(+)$1	241	111	136	14.3168

#DB
(((((.((((......))))...))	chr20:8364195-8364493(+)$1	1	225	250	14.9798
((((..((((......))))..)))	chr11:70217524-70217765(+)$1	1	132	157	14.6990
..((((((((......)))).))))	chr1:31461381-31461647(-)$1	1	149	174	14.5904
((.(.(((((......))))).).)	chr15:25307625-25307926(+)$1	1	120	145	13.6769
((((.(((((......)))))..))	chr6:159047075-159047374(+)$1	1	108	133	13.0407
(...((((((......)))))).))	chr2:236431127-236431420(+)$1	1	198	223	11.5241
(((..(((((......)))))..))	chr15:25229496-25229789(+)$1	1	261	286	13.3142
(((((.((((......)))).))))	chr2:218768717-218768982(-)$1	1	21	46	13.9200
...(.(((((......))))).)..	chr6:168333082-168333336(+)$1	1	110	135	14.1190
)))))(((((......))))).(((	chr5:52313322-52313602(+)$1	1	58	83	12.1939
..(((.((((......)))).))).	chr1:20234805-20235177(+)$1	1	278	303	15.8377
...((.((((......)))).))..	chr2:11414265-11414536(-)$1	1	92	117	11.9432
((((((((((......)))))))))	chr10:28848129-28848393(+)$1	1	80	105	13.6358
..(((.((((......))))..)))	chrY:2714961-2715302(+)$1	1	44	69	15.6675
(.((...(((......)))...)).	chr10:21991824-21992095(+)$1	1	141	166	12.6063
...(.(((((......))))).)..	chr20:61557200-61557452(-)$1	1	185	210	14.5692
((.((.((((......)))))))))	chr1:27022434-27022784(+)$1	1	212	237	13.5679
((((((((((......)))))))))	chr8:13133170-13133493(-)$1	1	93	118	13.6358
.(((((((((......)))))))))	chr5:14404075-14404377(+)$1	1	94	119	12.2213
((((..((((......)))))))))	chr2:118846237-118846531(+)$1	1	70	95	14.3168
.((..(((((......)))))))))	chr13:113869348-113869720(+)$1	1	289	314	12.9317
..(((.((((......))))..)))	chrY:2714754-2715047(+)$1	1	251	276	13.6204
((..((((((......))).)))..	chr19:34877329-34877648(+)$1	1	150	175	12.3984
..((((((((......).)))))))	chr21:46281381-46281704(-)$1	1	286	311	12.9490
.((((.((((......)))).))))	chr19:16985238-16985577(+)$1	1	80	105	14.7397
(((....((((.....))))...))	chr10:133789956-133790216(-)$1	1	9	34	9.9852
)).((.((((......)))).))..	chrY:2719540-2719867(+)$1	1	199	224	11.4609
..(((.((((......)))).))).	chr15:25309538-25309782(+)$1	1	103	128	15.8377
...(((.(((......)))))))))	chr13:113866141-113866390(+)$1	1	157	182	12.7727
((((((((((......)))).))).	chr5:285639-285871(+)$1	1	140	165	14.9185
(((((..(((......)))))))).	chr20:8360759-8361007(+)$1	1	210	235	12.3530
((..((((.(......).))))..)	chr7:157168562-157168827(+)$1	1	84	109	12.9483
((((..((((......))))..)))	chr11:70217493-70217724(+)$1	1	163	188	14.6990
....(.((((......)))).)...	chr3:196997959-196998240(-)$1	1	153	178	12.8651
)(((((((((......)))))))))	chr1:212933433-212933675(-)$1	1	88	113	12.8637
((((((((.(......).))))).)	chr20:34248953-34249203(-)$1	1	118	143	12.2024
.(((((((((......)))))))))	chr16:89513310-89513611(-)$1	1	273	298	12.2213
)(((((((((......))))).)))	chr12:104518943-104519157(+)$1	1	171	196	12.9160
((((((((.(......).)))))))	chr2:101767143-101767420(-)$1	1	233	258	13.4555
(((((.((((......)))).))))	chr21:46284775-46285068(-)$1	1	117	142	14.5085
((((((((((......)))).).))	chr5:1621395-1621793(-)$1	1	88	113	14.3172
..(((.((((......)))).))))	chr2:149077726-149078056(+)$1	1	61	86	15.8639
(((..(((((......)))))))))	chrX:17759345-17759662(+)$1	1	81	106	13.1977
((((((((((......)))).))).	chr11:129148908-129149245(-)$1	1	287	312	14.8788
.((..(((((......))))).)).	chr19:23536191-23536497(-)$1	1	62	87	11.4616
..((((((((......)))).))))	chr1:31461451-31461749(-)$1	1	251	276	14.5904
(...((((((......))))))...	chr2:42426175-42426409(+)$1	1	124	149	11.7469
((....((((......))))..)))	chr9:117026537-117026778(+)$1	1	6	31	15.2592
((((((((((......)))).))))	chr7:23497951-23498265(-)$1	1	139	164	15.0421
((.(((((((......)))))))))	chr22:50195593-50195843(-)$1	1	116	141	12.3923
((((..((((......)))))))))	chr2:118846196-118846437(+)$1	1	111	136	14.3168

#PSSM
f : 0.15	e : 0.11	d : 0.11	" : 0.11	b : 0.07	: : 0.07	c : 0.05	= : 0.05	! : 0.05	[ : 0.03	B : 0.01	( : 0.01	# : 0.01	a : 0.01	$ : 0.01	g : 0.01	
d : 0.17	" : 0.15	f : 0.15	e : 0.09	= : 0.05	! : 0.05	i : 0.05	b : 0.05	c : 0.03	( : 0.01	[ : 0.01	: : 0.01	# : 0.01	a : 0.01	$ : 0.01	g : 0.01	
d : 0.17	f : 0.11	c : 0.11	e : 0.09	" : 0.07	[ : 0.05	= : 0.05	b : 0.05	i : 0.05	! : 0.03	g : 0.03	# : 0.03	( : 0.01	: : 0.01	$ : 0.01	
c : 0.15	d : 0.13	! : 0.11	e : 0.09	f : 0.07	b : 0.07	a : 0.05	= : 0.05	i : 0.05	g : 0.05	" : 0.03	# : 0.03	$ : 0.01	
c : 0.17	! : 0.15	d : 0.11	e : 0.07	[ : 0.07	f : 0.07	b : 0.05	= : 0.05	i : 0.05	g : 0.05	# : 0.03	" : 0.01	a : 0.01	
[ : 0.25	e : 0.21	! : 0.09	c : 0.07	d : 0.05	= : 0.05	i : 0.05	g : 0.05	f : 0.03	# : 0.03	" : 0.01	a : 0.01	
d : 0.49	e : 0.21	= : 0.05	i : 0.05	f : 0.03	g : 0.03	" : 0.01	c : 0.01	# : 0.01	[ : 0.01	! : 0.01	
d : 0.50	e : 0.21	c : 0.07	= : 0.05	i : 0.05	f : 0.03	g : 0.03	
d : 0.49	e : 0.19	c : 0.07	i : 0.05	[ : 0.05	f : 0.03	= : 0.03	g : 0.03	
d : 0.49	e : 0.19	c : 0.07	a : 0.07	i : 0.05	f : 0.03	= : 0.03	g : 0.01	
o : 0.98	d : 0.01	
o : 0.98	n : 0.01	
o : 0.98	n : 0.01	
o : 0.98	n : 0.01	
o : 0.98	n : 0.01	
o : 0.98	n : 0.01	
d : 0.49	e : 0.19	c : 0.07	a : 0.07	i : 0.05	f : 0.03	= : 0.03	g : 0.01	
d : 0.49	e : 0.19	c : 0.07	] : 0.07	i : 0.05	f : 0.03	= : 0.03	g : 0.01	
d : 0.50	e : 0.21	c : 0.07	= : 0.05	i : 0.05	f : 0.03	g : 0.03	
d : 0.50	e : 0.23	= : 0.05	i : 0.05	f : 0.03	g : 0.03	3 : 0.01	] : 0.01	c : 0.01	
] : 0.29	e : 0.23	2 : 0.09	f : 0.07	3 : 0.05	= : 0.05	i : 0.05	c : 0.03	g : 0.03	b : 0.01	d : 0.01	
2 : 0.13	c : 0.13	d : 0.09	] : 0.09	f : 0.09	b : 0.07	3 : 0.05	= : 0.05	i : 0.05	g : 0.05	e : 0.05	a : 0.03	: : 0.01	
c : 0.19	d : 0.15	b : 0.09	f : 0.07	3 : 0.05	a : 0.05	2 : 0.05	= : 0.05	i : 0.05	g : 0.05	e : 0.05	] : 0.03	5 : 0.01	
c : 0.21	d : 0.15	f : 0.13	e : 0.09	2 : 0.05	= : 0.05	i : 0.05	] : 0.03	b : 0.03	3 : 0.03	g : 0.03	8 : 0.01	: : 0.01	5 : 0.01	
d : 0.19	c : 0.13	f : 0.13	2 : 0.09	e : 0.07	= : 0.05	] : 0.05	i : 0.05	3 : 0.03	g : 0.03	: : 0.03	8 : 0.01	a : 0.01	5 : 0.01	

#score	689.7758095153807
#seq	51
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_transcript_m2_run1.txt

#BEAR
}HHHHHHHH}CCCZZZE	chr11:819895-820169(+)$1	274	224	241	10.5906
JJJJJJJJ{AAKKDDDD	chr13:92001082-92001443(+)$1	361	5	22	11.7272
JJJJJJJJJ}BB}CCC:	chr1:245026462-245026712(-)$1	250	216	233	14.2575
JJJJJJJJJJFFFFFF:	chr1:19436787-19437001(-)$1	214	188	205	13.2557
IIIIIIIII}A}BB:::	chr17:1465202-1465496(-)$1	294	262	279	13.0756
IIIIIIIII~~~~A}HH	chr13:113760335-113760652(+)$1	317	241	258	13.1735
JJJJJJJJJYYBB}EEE	chr14:21549699-21549937(+)$1	238	154	171	14.3258
JJJJJJJJJJJJJJ}CC	chr5:145557026-145557290(-)$1	264	245	262	13.2081
IIIIIIIII}BBYYFFF	chr19:955602-955849(+)$1	247	162	179	13.7842
IIIIIIIII}BB}BBbb	chr8:25315651-25315919(-)$1	268	220	237	13.0958
JJJJJJJJJ}EEEEE::	chr15:90545338-90545643(+)$1	305	286	303	14.2887
JJJJJJJJJJYYBB}CC	chr12:26839428-26839637(-)$1	209	191	208	14.3270
JJJJJJJJJJ}EEEEE:	chr3:48586860-48587146(-)$1	286	227	244	14.2008
:HHHHHHHH}CCC~~~~	chr10:125851525-125851820(-)$1	295	272	289	10.1416
HHHHHHHH}A}A}AZZZ	chr13:113762940-113763179(+)$1	239	206	223	10.4046
JJJJJJJJJJ{EEEEE:	chr10:121341870-121342115(-)$1	245	31	48	13.2400
IIIIIIIIIBBFFFFFF	chr17:45772666-45772928(+)$1	262	160	177	12.9261
HHHHHHHHEEEEE{ACC	chr10:33246730-33246995(-)$1	265	50	67	9.2973
IIIIIIIIIEEEEE}FF	chr12:104333223-104333452(+)$1	229	185	202	13.5916
JJJJJJJJJYYCCC}A:	chr4:2935714-2935977(-)$1	263	124	141	14.1272
JJJJJJJJJZZZCCCYY	chr21:27484217-27484506(-)$1	289	198	215	13.8243
JJJJJJJJJJKKCCC{C	chr17:7747780-7748047(+)$1	267	50	67	11.8708
JJJJJJJJJ}DDDDYYB	chr4:1804291-1804567(+)$1	276	229	246	14.8052
HHHHIIIIIIIII::::	chr17:73997045-73997343(+)$1	298	280	297	10.2389
JJJJJJJJJ}DDDD~~~	chr8:103358391-103358631(-)$1	240	196	213	14.8089
IIIIIIIII:EEEEEDD	chr14:56103091-56103354(+)$1	263	103	120	12.9083
IIIIIIIIIZZZBB}BB	chr10:103577725-103578033(-)$1	308	114	131	13.8689
JJJJJJJJJ~~~~DDDD	chr2:63053176-63053410(+)$1	234	214	231	13.6546
JJJJJJJJJ}DDDD}BB	chr11:637281-637542(+)$1	261	213	230	14.7807
cIIIIIIIIIKKEEEEE	chr18:74203943-74204257(-)$1	314	31	48	10.7542
JJJJJJJJJJJJEEEEE	chr7:5459059-5459328(-)$1	269	116	133	13.8753
IIIIIIIII}BBCCC::	chr17:45726571-45726880(-)$1	309	195	212	13.5049
JJJJJJJJJJ}FFFFFF	chr21:44395151-44395488(+)$1	337	203	220	13.4598
JJJJJJJJ{DDDD{BB:	chr6:56380149-56380464(-)$1	315	15	32	11.9262
JJJJJJJJJ}DDDD~~~	chr2:178128933-178129214(-)$1	281	247	264	14.8089
IIIIIIIIIYYBB}BBF	chr14:105252192-105252459(-)$1	267	225	242	13.6857
IIIIIIIIIYYCCCZZZ	chrY:2713651-2713874(+)$1	223	198	215	13.6599
IIIIIIIIIYYDDDD}C	chr16:447942-448197(+)$1	255	192	209	13.7404
}A}JJJJJJJJJJYYBB	chr13:113764171-113764461(+)$1	290	249	266	11.8162
JJJJJJJJJJJJKKCCC	chr8:145027250-145027503(-)$1	253	77	94	12.4572
JJJJJJJJJJ{FFFFFF	chr11:702680-702943(-)$1	263	160	177	12.4990
JJJJJJJJJ}FFFFFFD	chr2:97525493-97525817(-)$1	324	234	251	13.8346
IIIIIIIIIYYDDDD::	chr5:134260167-134260370(+)$1	203	165	182	13.0863
JJJJJJJJJ}CCCBB}C	chr7:63565915-63566139(+)$1	224	202	219	14.4703
JJJJJJJJJJEEEEE::	chr1:36787403-36787687(+)$1	284	84	101	13.7830
JJJJJJJJJJ::::CCC	chr3:38207235-38207502(+)$1	267	122	139	12.0245
JJJJJJJJJ~~~~DDDD	chr10:21784871-21785100(-)$1	229	206	223	13.6546
JJJJJJJJJJJJJAYYB	chr17:80192391-80192664(+)$1	273	234	251	13.7799
HHHHHHHH}CCCBB}A}	chr5:43291071-43291288(-)$1	217	193	210	10.3147
IIIIIIIIIYYEEEEE}	chr6:144803246-144803452(+)$1	206	177	194	14.2089
}HHHHHHHH}DDDD:::	chr7:158154209-158154450(-)$1	241	223	240	9.8632
JJJJJJJKKBB{DDDD:	chr16:448084-448343(+)$1	259	56	73	11.0217
IIIIIIIIA}FFFFFF:	chr1:19474961-19475191(-)$1	230	105	122	12.6122

#otherMatches

#Seq PSSM
GCCUGUCUGGCGCAAAG	chr11:819895-820169(+)$1	274	224	241	10.5906
GCGCCGCCGCCGAUUGU	chr13:92001082-92001443(+)$1	361	5	22	11.7272
CGGCUCCUCGCCGCUGU	chr1:245026462-245026712(-)$1	250	216	233	14.2575
UGGGAGGGGAGGAGGGA	chr1:19436787-19437001(-)$1	214	188	205	13.2557
CUCCCGGCGGUGGGGAA	chr17:1465202-1465496(-)$1	294	262	279	13.0756
AGGUAGGGGACGGUGCG	chr13:113760335-113760652(+)$1	317	241	258	13.1735
GCCCGCUGCCAAGAGCU	chr14:21549699-21549937(+)$1	238	154	171	14.3258
uuuuuuuuuuuuuuuuu	chr5:145557026-145557290(-)$1	264	245	262	13.2081
GGACCUUCCGCUCGCCC	chr19:955602-955849(+)$1	247	162	179	13.7842
gggggcgcggcgggccg	chr8:25315651-25315919(-)$1	268	220	237	13.0958
GGUGGCGGGCGGGGUCC	chr15:90545338-90545643(+)$1	305	286	303	14.2887
AACUCUUCAGAGAGCUG	chr12:26839428-26839637(-)$1	209	191	208	14.3270
GAGGUCACGCUCGCUCA	chr3:48586860-48587146(-)$1	286	227	244	14.2008
GGCCGGCGUGCGCGCGA	chr10:125851525-125851820(-)$1	295	272	289	10.1416
UCCCGGGGGAGUGGGUG	chr13:113762940-113763179(+)$1	239	206	223	10.4046
UUUUCUGUUUUGCAGCA	chr10:121341870-121342115(-)$1	245	31	48	13.2400
GGGUCCCAGGUCAGGGG	chr17:45772666-45772928(+)$1	262	160	177	12.9261
ggggcgggggcgggggc	chr10:33246730-33246995(-)$1	265	50	67	9.2973
UAUUUAUAAUUCCCUAG	chr12:104333223-104333452(+)$1	229	185	202	13.5916
GUUUCCUGCUGCCUGGG	chr4:2935714-2935977(-)$1	263	124	141	14.1272
GUAUUGCCAAGAAGUAA	chr21:27484217-27484506(-)$1	289	198	215	13.8243
GGGCGAGGUGAAGUGAG	chr17:7747780-7748047(+)$1	267	50	67	11.8708
AGCCUUUGGGGCUGACG	chr4:1804291-1804567(+)$1	276	229	246	14.8052
CAGGUUCCCAGGCAGGA	chr17:73997045-73997343(+)$1	298	280	297	10.2389
AUUUCUGGAGUGCUCUU	chr8:103358391-103358631(-)$1	240	196	213	14.8089
GGGAAGAAGUUCAGAGC	chr14:56103091-56103354(+)$1	263	103	120	12.9083
gggaagggcagaggggg	chr10:103577725-103578033(-)$1	308	114	131	13.8689
AAGGAAAAGCCACGUAA	chr2:63053176-63053410(+)$1	234	214	231	13.6546
CCCUGCAGACGCCCACC	chr11:637281-637542(+)$1	261	213	230	14.7807
GGGAAGCGUACGGACCC	chr18:74203943-74204257(-)$1	314	31	48	10.7542
GAGGGGCGCGGGGGACC	chr7:5459059-5459328(-)$1	269	116	133	13.8753
UCCUGCGCCGCGCCCAC	chr17:45726571-45726880(-)$1	309	195	212	13.5049
CCCCGGCCCCGGCCUCG	chr21:44395151-44395488(+)$1	337	203	220	13.4598
ACUGAAGAACUAUGAUA	chr6:56380149-56380464(-)$1	315	15	32	11.9262
GCGUCCCCGGGCCCGAG	chr2:178128933-178129214(-)$1	281	247	264	14.8089
CUGAGACCCAGGUGCUU	chr14:105252192-105252459(-)$1	267	225	242	13.6857
AGAGGGUGUUUAAGCCA	chrY:2713651-2713874(+)$1	223	198	215	13.6599
GCCGGAGGGUAGCUUGG	chr16:447942-448197(+)$1	255	192	209	13.7404
AGCGGAGGCGGGGAAGG	chr13:113764171-113764461(+)$1	290	249	266	11.8162
GGGGGGCUGGGGGCUGC	chr8:145027250-145027503(-)$1	253	77	94	12.4572
ACUCAGGAGAGCCAGAG	chr11:702680-702943(-)$1	263	160	177	12.4990
CCCUAGGAGGAGGGCUC	chr2:97525493-97525817(-)$1	324	234	251	13.8346
AUAGAUUAUGUGAUUAG	chr5:134260167-134260370(+)$1	203	165	182	13.0863
UUAGUGUCAGGUUGUUU	chr7:63565915-63566139(+)$1	224	202	219	14.4703
GCAGGUGUGCUGUAUCG	chr1:36787403-36787687(+)$1	284	84	101	13.7830
UGCCGCCGUCAUGUCCG	chr3:38207235-38207502(+)$1	267	122	139	12.0245
UCGCUCCCUUCCUCCCC	chr10:21784871-21785100(-)$1	229	206	223	13.6546
UCUGCCUUAGAGGCAAA	chr17:80192391-80192664(+)$1	273	234	251	13.7799
CCUGGAUGACUAUCGUG	chr5:43291071-43291288(-)$1	217	193	210	10.3147
UGCCCUCUGGUGGCCAG	chr6:144803246-144803452(+)$1	206	177	194	14.2089
ACUGGGCAGUGGGGAUU	chr7:158154209-158154450(-)$1	241	223	240	9.8632
GGGUAGCUUGGCUCUGG	chr16:448084-448343(+)$1	259	56	73	11.0217
UGCUUUGCCGUUGGCCC	chr1:19474961-19475191(-)$1	230	105	122	12.6122

#DB
.)))))))).)))...)	chr11:819895-820169(+)$1	1	224	241	10.5906
((((((((.((..((((	chr13:92001082-92001443(+)$1	1	5	22	11.7272
))))))))).)).))).	chr1:245026462-245026712(-)$1	1	216	233	14.2575
)))))))))))))))).	chr1:19436787-19437001(-)$1	1	188	205	13.2557
))))))))).).))...	chr17:1465202-1465496(-)$1	1	262	279	13.0756
)))))))))....).))	chr13:113760335-113760652(+)$1	1	241	258	13.1735
)))))))))..)).)))	chr14:21549699-21549937(+)$1	1	154	171	14.3258
)))))))))))))).))	chr5:145557026-145557290(-)$1	1	245	262	13.2081
))))))))).))..)))	chr19:955602-955849(+)$1	1	162	179	13.7842
))))))))).)).))((	chr8:25315651-25315919(-)$1	1	220	237	13.0958
))))))))).)))))..	chr15:90545338-90545643(+)$1	1	286	303	14.2887
))))))))))..)).))	chr12:26839428-26839637(-)$1	1	191	208	14.3270
)))))))))).))))).	chr3:48586860-48587146(-)$1	1	227	244	14.2008
.)))))))).)))....	chr10:125851525-125851820(-)$1	1	272	289	10.1416
)))))))).).).)...	chr13:113762940-113763179(+)$1	1	206	223	10.4046
((((((((((.(((((.	chr10:121341870-121342115(-)$1	1	31	48	13.2400
(((((((((((((((((	chr17:45772666-45772928(+)$1	1	160	177	12.9261
(((((((((((((.(((	chr10:33246730-33246995(-)$1	1	50	67	9.2973
)))))))))))))).))	chr12:104333223-104333452(+)$1	1	185	202	13.5916
)))))))))..))).).	chr4:2935714-2935977(-)$1	1	124	141	14.1272
)))))))))...)))..	chr21:27484217-27484506(-)$1	1	198	215	13.8243
((((((((((..(((.(	chr17:7747780-7748047(+)$1	1	50	67	11.8708
))))))))).))))..)	chr4:1804291-1804567(+)$1	1	229	246	14.8052
)))))))))))))....	chr17:73997045-73997343(+)$1	1	280	297	10.2389
))))))))).))))...	chr8:103358391-103358631(-)$1	1	196	213	14.8089
))))))))).(((((((	chr14:56103091-56103354(+)$1	1	103	120	12.9083
)))))))))...)).))	chr10:103577725-103578033(-)$1	1	114	131	13.8689
)))))))))....))))	chr2:63053176-63053410(+)$1	1	214	231	13.6546
))))))))).)))).))	chr11:637281-637542(+)$1	1	213	230	14.7807
)(((((((((..(((((	chr18:74203943-74204257(-)$1	1	31	48	10.7542
))))))))))))(((((	chr7:5459059-5459328(-)$1	1	116	133	13.8753
))))))))).)))))..	chr17:45726571-45726880(-)$1	1	195	212	13.5049
)))))))))).))))))	chr21:44395151-44395488(+)$1	1	203	220	13.4598
((((((((.((((.((.	chr6:56380149-56380464(-)$1	1	15	32	11.9262
))))))))).))))...	chr2:178128933-178129214(-)$1	1	247	264	14.8089
)))))))))..)).)))	chr14:105252192-105252459(-)$1	1	225	242	13.6857
)))))))))..)))...	chrY:2713651-2713874(+)$1	1	198	215	13.6599
)))))))))..)))).)	chr16:447942-448197(+)$1	1	192	209	13.7404
.).))))))))))..))	chr13:113764171-113764461(+)$1	1	249	266	11.8162
((((((((((((..(((	chr8:145027250-145027503(-)$1	1	77	94	12.4572
((((((((((.((((((	chr11:702680-702943(-)$1	1	160	177	12.4990
))))))))).)))))))	chr2:97525493-97525817(-)$1	1	234	251	13.8346
)))))))))..))))..	chr5:134260167-134260370(+)$1	1	165	182	13.0863
))))))))).))))).)	chr7:63565915-63566139(+)$1	1	202	219	14.4703
)))))))))))))))..	chr1:36787403-36787687(+)$1	1	84	101	13.7830
))))))))))....(((	chr3:38207235-38207502(+)$1	1	122	139	12.0245
)))))))))....))))	chr10:21784871-21785100(-)$1	1	206	223	13.6546
))))))))))))))..)	chr17:80192391-80192664(+)$1	1	234	251	13.7799
)))))))).))))).).	chr5:43291071-43291288(-)$1	1	193	210	10.3147
)))))))))..))))).	chr6:144803246-144803452(+)$1	1	177	194	14.2089
.)))))))).))))...	chr7:158154209-158154450(-)$1	1	223	240	9.8632
(((((((..((.((((.	chr16:448084-448343(+)$1	1	56	73	11.0217
))))))))).)))))).	chr1:19474961-19475191(-)$1	1	105	122	12.6122

#PSSM
J : 0.54	I : 0.28	H : 0.07	} : 0.05	: : 0.01	c : 0.01	
J : 0.54	I : 0.30	H : 0.13	A : 0.01	
J : 0.54	I : 0.30	H : 0.13	} : 0.01	
J : 0.56	I : 0.30	H : 0.13	
J : 0.56	I : 0.32	H : 0.11	
J : 0.56	I : 0.32	H : 0.11	
J : 0.56	I : 0.32	H : 0.11	
J : 0.54	I : 0.32	H : 0.11	K : 0.01	
J : 0.50	I : 0.30	H : 0.05	{ : 0.03	} : 0.03	E : 0.01	K : 0.01	A : 0.01	
} : 0.30	J : 0.26	Y : 0.13	~ : 0.05	A : 0.03	B : 0.03	E : 0.03	Z : 0.03	I : 0.03	: : 0.01	D : 0.01	C : 0.01	
Y : 0.15	B : 0.11	D : 0.11	J : 0.09	E : 0.09	C : 0.07	F : 0.05	~ : 0.05	} : 0.05	A : 0.03	{ : 0.03	Z : 0.03	K : 0.03	I : 0.01	: : 0.01	
E : 0.15	D : 0.15	C : 0.11	B : 0.11	F : 0.11	J : 0.09	K : 0.05	~ : 0.05	Z : 0.03	} : 0.01	Y : 0.01	A : 0.01	I : 0.01	: : 0.01	{ : 0.01	
E : 0.18	D : 0.16	C : 0.15	F : 0.11	B : 0.11	} : 0.05	~ : 0.05	J : 0.05	K : 0.03	Y : 0.01	I : 0.01	: : 0.01	
D : 0.20	E : 0.16	C : 0.11	F : 0.11	B : 0.11	A : 0.05	} : 0.03	Y : 0.03	{ : 0.03	: : 0.03	Z : 0.01	J : 0.01	~ : 0.01	K : 0.01	
E : 0.16	} : 0.15	F : 0.13	D : 0.11	C : 0.11	B : 0.07	Z : 0.05	: : 0.05	~ : 0.05	Y : 0.05	A : 0.01	
F : 0.15	: : 0.13	C : 0.11	E : 0.11	D : 0.09	B : 0.09	Z : 0.05	~ : 0.05	Y : 0.05	A : 0.03	} : 0.03	H : 0.01	b : 0.01	{ : 0.01	
: : 0.28	C : 0.15	F : 0.11	D : 0.09	B : 0.09	E : 0.07	~ : 0.05	Z : 0.03	} : 0.03	H : 0.01	b : 0.01	Y : 0.01	

#score	686.6439079796544
#seq	53
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_UTR_m2_run2.txt

#BEAR
:ccc[ggggggg!!cccmmmmccc22ggggggg]c	chr4:26436098-26436394(+)$1	296	62	97	11.1524
!!ccceeeee[eeeeeooooooeeeee333eeeee	chr12:69663164-69663392(+)$1	228	139	174	13.5490
===========!!cccooooooccc4444======	chr20:61518490-61518819(-)$1	329	136	171	19.0843
dddd[ccceeeee!!aooooooa22eeeee22ccc	chr6:52318026-52318289(+)$1	263	30	65	11.3597
ddd"""eeeee!!cccooooooccc4444eeeee2	chr7:7283377-7283639(+)$1	262	78	113	16.0701
ccc"""ffffff[cccoooooocccffffff4444	chr10:64952799-64953076(-)$1	277	109	144	14.4198
f"""ccc####eeeeeooooooeeeee333ccc33	chr14:39651983-39652243(+)$1	260	66	101	14.7567
=========="""cccnnnnnccc55555======	chr2:70438885-70439133(-)$1	248	73	108	12.3369
:ggggggg[ccc[cccooooooccc]cccgggggg	chr2:20134800-20135065(-)$1	265	47	82	16.2824
$eeeee"""ccc[ccclllccc]ccc333eeeee8	chr1:11084589-11084882(+)$1	293	175	210	11.8719
"ggggggg$$$$$cccooooooccc55555ggggg	chr13:41132005-41132276(-)$1	271	175	210	14.6082
iiiiiiii$$$$$cccooooooccc55555iiiii	chr13:41131862-41132107(-)$1	245	6	41	14.7747
ffffdddd[bb[ddddoooooodddd22bb]dddd	chr5:134194045-134194290(+)$1	245	37	72	11.5798
ggggggg!!gggggggooooooggggggg]ggggg	chr17:62510509-62510772(+)$1	263	197	232	15.5105
eee!!ccc[dddd[aooooooa]dddd]ccc22ee	chr12:72050466-72050738(-)$1	272	38	73	12.0946
ddd"""ffffff!!bboooooobb22ffffff333	chr17:30697266-30697521(+)$1	255	188	223	12.5733
+ccc####iiiiiiiiinnnnniiiiiiiii4444	chr20:34319613-34319853(-)$1	240	77	112	11.3053
:gggggggeeeeecccooooooccc]eeeee]ggg	chr16:52472039-52472337(-)$1	298	232	267	14.4211
iii"""ccc[ffffffooooooffffff333ccc3	chr1:57180230-57180556(+)$1	326	192	227	13.5530
hhhhhh[ccc"""cccooooooccc22ccc]hhhh	chr7:30407203-30407478(+)$1	275	101	136	15.1916
ddddccc[bb"""cccooooooccc333bbccc]d	chr3:156869387-156869660(-)$1	273	0	35	15.5962
fffff####gggggggooooooggggggg]fffff	chr3:50004509-50004752(+)$1	243	171	206	13.7174
:ggggggg[a!!cccammmma]ccc22a]gggggg	chrX:128580699-128580937(-)$1	238	36	71	12.5599
EEEiiiiiiiii[cccooooooccciiiiiiiiiC	chr4:433762-434080(-)$1	318	277	312	12.7751
[bb[a!!dddd!!cccooooooccc22dddd22a]	chr3:142137035-142137345(-)$1	310	49	84	14.5537
'''ggggggga!!cccnnnnnccc22a]ggggggg	chr21:40669900-40670192(-)$1	292	102	137	11.9527
iiiiiiiii####accclllccc]a4444iiiiii	chr11:9610909-9611202(+)$1	293	135	170	14.2897
cccggggggg!!ddddnnnnndddd22ggggggg]	chr13:79894055-79894381(-)$1	326	171	206	12.5408
==========####ddddllldddd4444======	chr6:75964171-75964410(-)$1	239	166	201	13.7735
ggggggg"""cccrrrrrrrrrccc333ggggggg	chr9:108313590-108313835(+)$1	245	184	219	13.4441
c[eeeee[a[cccrrrrrrrrrccc]a333eeeee	chr20:30959917-30960253(+)$1	336	45	80	11.5718
:ffffffccc[eeeeeooooooeeeee]ccc22ff	chr8:38069997-38070292(+)$1	295	63	98	11.5900
eeee!!ffffff[cccoooooocccffffff22ee	chr10:14944517-14944793(+)$1	276	60	95	13.8063
ggggggeeeee!!cccooooooccc4444eeeeeG	chr17:56167539-56167804(+)$1	265	98	133	16.2118
ee:eeeee[ccc[cccoooooocccccc]eeeeeF	chr6:167454011-167454272(+)$1	261	52	87	13.5504
cc[eeeee[ccc[cccoooooocccccc]eeeeec	chr6:167453897-167454192(+)$1	295	166	201	15.2577
[eeeee&&&&&&&cccooooooccc333eeeee]f	chr14:77490945-77491267(-)$1	322	27	62	12.6911
b[ccc"""ccc!!cccooooooccc22ccc55555	chr14:39651677-39651934(+)$1	257	45	80	12.4436
hhhhhhh!!ddddcccooooooccc]ddddhhhhh	chr10:14944667-14944939(+)$1	272	228	263	12.7777
!ffffff$$$$$ddddoooooodddd4444fffff	chr14:94745855-94746139(+)$1	284	103	138	14.1777
"ccc!!iiiiiiiii[ccclllccc22iiiiiiii	chr17:53040240-53040487(-)$1	247	147	182	12.6584
hhhhhhh$$$$$ddddoooooodddd4444hhhhh	chr13:96642353-96642624(-)$1	271	62	97	13.2978
""ffffff[a!!ddddooooooddddaffffffdd	chr3:172118251-172118583(+)$1	332	156	191	13.1953
[ggggggg$$$$$ddddnnnnndddd22ggggggg	chr12:69663537-69663765(+)$1	228	186	221	12.1539
d"""cccgggggggcccnnnnnccc]ggggggg]c	chr19:23541047-23541335(-)$1	288	62	97	12.4148
iiiiiiiiiccc[ccclllccc]ccc]iiiiiiii	chr3:167726518-167726848(-)$1	330	259	294	12.8795
::ggggggggggggggooooooggggggg22gggg	chr17:56082387-56082623(-)$1	236	197	232	12.8051
eeeee"""==========mmmm==========444	chr4:164440741-164441038(+)$1	297	188	223	11.5128
f[==========ddddnnnnndddd]=========	chr3:132384479-132384748(+)$1	269	174	209	12.9984
h####ccc[==========lll==========333	chr20:48250680-48250987(-)$1	307	251	286	12.6313
ffffff$$$$$eeeeeooooooeeeee333fffff	chr6:4064697-4064961(+)$1	264	41	76	12.9100
gg!!dddd[ccc!!bboooooobb22ccc]dddd2	chr17:25635509-25635775(+)$1	266	154	189	12.7035
::==========[cccooooooccc55555=====	chr6:163985761-163986012(+)$1	251	32	67	13.6709

#otherMatches

#Seq PSSM
AUGGUUAGAAACAAUAAUAUAUUAGGGUUUCUGUU	chr4:26436098-26436394(+)$1	296	62	97	11.1524
GAUCACCUUCCAAGACAAAACAGUCUUCAUGGGGG	chr12:69663164-69663392(+)$1	228	139	174	13.5490
GUUUUCAUGUGUGUAUGUAACAGUAGCUUUGCAUG	chr20:61518490-61518819(-)$1	329	136	171	19.0843
AUUUCACAGAAGCCCCACUACAGAUGCUUCCUUGU	chr6:52318026-52318289(+)$1	263	30	65	11.3597
UUCUAAGUGAACAUUCCUUAUAGAAACCUUUCACA	chr7:7283377-7283639(+)$1	262	78	113	16.0701
UACUAAUUGAAUUAUUGAAGAAAGUGUUUAAAAAU	chr10:64952799-64953076(-)$1	277	109	144	14.4198
UGAUUAUUAACUUUGUUGUUUUACAAAUUUGUAUG	chr14:39651983-39652243(+)$1	260	66	101	14.7567
AACUUGUUACUAAAGAAAAUAUCUGAAAUGUGAUA	chr2:70438885-70439133(-)$1	248	73	108	12.3369
CUUUAAUAUGAUCACAGUCUUGUGUAGUCUGUUAA	chr2:20134800-20135065(-)$1	265	47	82	16.2824
UGUGGUAACAUUGAAUACAGUUGAAUAAAAUCGCU	chr1:11084589-11084882(+)$1	293	175	210	11.8719
UUAGGAUAACUUAAUAUGUUUUUAUGUAUGUAUUU	chr13:41132005-41132276(-)$1	271	175	210	14.6082
UUAGGAUAACUUAAUAUGUUUUUAUGUAUGUAUUU	chr13:41131862-41132107(-)$1	245	6	41	14.7747
AACACUGUCUCUUGUUAUGAUAAACACUGAAAUAG	chr5:134194045-134194290(+)$1	245	37	72	11.5798
UAAUUUAUACUAGAAAGAUAAAUUUCUGGCUAAAU	chr17:62510509-62510772(+)$1	263	197	232	15.5105
UUUCCCUGAAAUCCGACACUACUGAUUCUAGUCAA	chr12:72050466-72050738(-)$1	272	38	73	12.0946
UAGUUACCAAUGCAGUUUUGAUAUAUCAUUGGAUU	chr17:30697266-30697521(+)$1	255	188	223	12.5733
AUUUUUAUUUUUUUAAUGAUUGGUUAAAAAGUAUU	chr20:34319613-34319853(-)$1	240	77	112	11.3053
AUGCUGUUUUAUACUUUUUUAUGAGUUAUGAUAGC	chr16:52472039-52472337(-)$1	298	232	267	14.4211
UUCUUUGUCAUGUAUGCUUAAAUAUACAGUGGAUU	chr1:57180230-57180556(+)$1	326	192	227	13.5530
AUGAUUCCAGCUCAGAUAACAUUUUCCCUGAAGUU	chr7:30407203-30407478(+)$1	275	101	136	15.1916
GGAUGGCCUGAUUGGCUACCCUGCUCUCCAGCCAA	chr3:156869387-156869660(-)$1	273	0	35	15.5962
ACUUUCCUCGUGUUCUGAAAUGGGAGCAUAAAAGU	chr3:50004509-50004752(+)$1	243	171	206	13.7174
CUCUCAGUCCUUGUUCUUUUGAAGCUUGUGCUGAG	chrX:128580699-128580937(-)$1	238	36	71	12.5599
GAAAUAAAAAUUGUUAUUGUGUUAAAAUUUUUGUG	chr4:433762-434080(-)$1	318	277	312	12.7751
GCAGUUAUUCAGAAAAUAUGAUUUUGAUGAAGUAG	chr3:142137035-142137345(-)$1	310	49	84	14.5537
AAUGUGAGUUCUUAAUUUUCCAUUUUGUAGCUCAC	chr21:40669900-40670192(-)$1	292	102	137	11.9527
UUGUGUAUAUAAACCGAUCUUCGUGAUACUGUACA	chr11:9610909-9611202(+)$1	293	135	170	14.2897
UGGUGUAUGACUGCUUUACAUGAGUCCUUAUGCAU	chr13:79894055-79894381(-)$1	326	171	206	12.5408
CAGUUAAAAGAAUGUGUGUUUCAUAAUGACUUUUA	chr6:75964171-75964410(-)$1	239	166	201	13.7735
aacagcaaagugcuacguaaauguaaaguguuguu	chr9:108313590-108313835(+)$1	245	184	219	13.4441
ACAGGUGUGAGCCACUGCACCAGGCCCCUUCAUCU	chr20:30959917-30960253(+)$1	336	45	80	11.5718
aaguagagauuuuagucuuuucacuaauguccuuu	chr8:38069997-38070292(+)$1	295	63	98	11.5900
CAUAUUUGGGACUCUUAUUAUCAAGGUUCUACCUA	chr10:14944517-14944793(+)$1	276	60	95	13.8063
AGGGAGGGAGGGGGCAGGACAGUGUGGAAUCUCUA	chr17:56167539-56167804(+)$1	265	98	133	16.2118
CUAUUUAGUUUUGCUUGUUUUAAAGAAAUCUAGAA	chr6:167454011-167454272(+)$1	261	52	87	13.5504
CUAUUUAGUUUUGCUUGUUUUAAAGAAAUCUAGAA	chr6:167453897-167454192(+)$1	295	166	201	15.2577
AGCUUCCUUCUAAACUGCCCCAAGUGUUGAAGUCU	chr14:77490945-77491267(-)$1	322	27	62	12.6911
GUAGAUAACUAAACAGUAUGAUCUGGUUGGCAUUU	chr14:39651677-39651934(+)$1	257	45	80	12.4436
GAAACAGUUAAUUUGGGCAAAUCUACAGUUCUGUU	chr10:14944667-14944939(+)$1	272	228	263	12.7777
GAUGUAUGAUAAAGAUGAUCUAAUUUGUGAAUGCA	chr14:94745855-94746139(+)$1	284	103	138	14.1777
UGUAUAGUUUCUGUUAUGUAAUACGAGAAUAGAAA	chr17:53040240-53040487(-)$1	247	147	182	12.6584
AGUAUAUUCCUCCAGAUUUUGUUUUGUUUCAUAUA	chr13:96642353-96642624(-)$1	271	62	97	13.2978
AUGCUAUAUGUAAUACCUAACUGUAUCUGUAGUGU	chr3:172118251-172118583(+)$1	332	156	191	13.1953
UGUGUAAAGCUGUUCAAGUUAUUUGAUGUUUACAC	chr12:69663537-69663765(+)$1	228	186	221	12.1539
CAAAUAUGAAGAGGCAUUAUUUAUGACCUUUUCUA	chr19:23541047-23541335(-)$1	288	62	97	12.4148
AGAAUACAAUUAUUUUGGUAAAUUAGCUUGUAUUU	chr3:167726518-167726848(-)$1	330	259	294	12.8795
UGCUUUUCAUGUGUCUUUCUGUAGACAUAUCUGAA	chr17:56082387-56082623(-)$1	236	197	232	12.8051
AUAUAACUAAGGACAAAAAAUGUUUUGUUUUUCUU	chr4:164440741-164441038(+)$1	297	188	223	11.5128
UCUUUGUUUUAAGCCGCUUGAUGGCAUUGAAACGA	chr3:132384479-132384748(+)$1	269	174	209	12.9984
uguuuguguuuuuguuCUUUUGAAGAAUAGAGUGG	chr20:48250680-48250987(-)$1	307	251	286	12.6313
GGAAAGAAAGCCAUAUAUUCAAAUAUGUAAUUUUC	chr6:4064697-4064961(+)$1	264	41	76	12.9100
GUGAUUAUCUCAAAGGGAGAUGCCAAUGGAGUAAC	chr17:25635509-25635775(+)$1	266	154	189	12.7035
AUGUGGAACAAACUGUUUCUGUGCAACCCCUUUGU	chr6:163985761-163986012(+)$1	251	32	67	13.6709

#DB
.(((.(((((((..(((....)))..))))))).)	chr4:26436098-26436394(+)$1	1	62	97	11.1524
..((((((((.(((((......)))))...)))))	chr12:69663164-69663392(+)$1	1	139	174	13.5490
(((((((((((..(((......)))....))))))	chr20:61518490-61518819(-)$1	1	136	171	19.0843
((((.((((((((..(......)..)))))..)))	chr6:52318026-52318289(+)$1	1	30	65	11.3597
(((...(((((..(((......)))....))))).	chr7:7283377-7283639(+)$1	1	78	113	16.0701
(((...((((((.(((......)))))))))....	chr10:64952799-64953076(-)$1	1	109	144	14.4198
(...(((....(((((......)))))...)))..	chr14:39651983-39652243(+)$1	1	66	101	14.7567
((((((((((...(((.....))).....))))))	chr2:70438885-70439133(-)$1	1	73	108	12.3369
.(((((((.(((.(((......))).)))))))))	chr2:20134800-20135065(-)$1	1	47	82	16.2824
.(((((...(((.(((...))).)))...))))).	chr1:11084589-11084882(+)$1	1	175	210	11.8719
.(((((((.....(((......))).....)))))	chr13:41132005-41132276(-)$1	1	175	210	14.6082
((((((((.....(((......))).....)))))	chr13:41131862-41132107(-)$1	1	6	41	14.7747
((((((((.((.((((......))))..)).))))	chr5:134194045-134194290(+)$1	1	37	72	11.5798
(((((((..(((((((......))))))).)))))	chr17:62510509-62510772(+)$1	1	197	232	15.5105
(((..(((.((((.(......).)))).)))..))	chr12:72050466-72050738(-)$1	1	38	73	12.0946
(((...((((((..((......))..))))))...	chr17:30697266-30697521(+)$1	1	188	223	12.5733
.(((....(((((((((.....)))))))))....	chr20:34319613-34319853(-)$1	1	77	112	11.3053
.(((((((((((((((......))).))))).)))	chr16:52472039-52472337(-)$1	1	232	267	14.4211
(((...(((.((((((......))))))...))).	chr1:57180230-57180556(+)$1	1	192	227	13.5530
((((((.(((...(((......)))..))).))))	chr7:30407203-30407478(+)$1	1	101	136	15.1916
(((((((.((...(((......)))...))))).)	chr3:156869387-156869660(-)$1	1	0	35	15.5962
(((((....(((((((......))))))).)))))	chr3:50004509-50004752(+)$1	1	171	206	13.7174
.(((((((.(..((((....).)))..).))))))	chrX:128580699-128580937(-)$1	1	36	71	12.5599
)))(((((((((.(((......)))))))))))))	chr4:433762-434080(-)$1	1	277	312	12.7751
.((.(..((((..(((......)))..))))..).	chr3:142137035-142137345(-)$1	1	49	84	14.5537
...((((((((..(((.....)))..).)))))))	chr21:40669900-40670192(-)$1	1	102	137	11.9527
(((((((((....((((...))).)....))))))	chr11:9610909-9611202(+)$1	1	135	170	14.2897
((((((((((..((((.....))))..))))))).	chr13:79894055-79894381(-)$1	1	171	206	12.5408
((((((((((....((((...))))....))))))	chr6:75964171-75964410(-)$1	1	166	201	13.7735
(((((((...(((.........)))...)))))))	chr9:108313590-108313835(+)$1	1	184	219	13.4441
(.(((((.(.(((.........))).)...)))))	chr20:30959917-30960253(+)$1	1	45	80	11.5718
.(((((((((.(((((......))))).)))..))	chr8:38069997-38070292(+)$1	1	63	98	11.5900
((((..((((((.(((......)))))))))..))	chr10:14944517-14944793(+)$1	1	60	95	13.8063
))))))(((((..(((......)))....)))))(	chr17:56167539-56167804(+)$1	1	98	133	16.2118
)).(((((.(((.(((......)))))).)))))(	chr6:167454011-167454272(+)$1	1	52	87	13.5504
((.(((((.(((.(((......)))))).))))))	chr6:167453897-167454192(+)$1	1	166	201	15.2577
.(((((.......(((......)))...))))).)	chr14:77490945-77491267(-)$1	1	27	62	12.6911
(.(((...(((..(((......)))..))).....	chr14:39651677-39651934(+)$1	1	45	80	12.4436
(((((((..(((((((......))).)))))))))	chr10:14944667-14944939(+)$1	1	228	263	12.7777
.((((((.....((((......))))....)))))	chr14:94745855-94746139(+)$1	1	103	138	14.1777
.(((..(((((((((.(((...)))..))))))))	chr17:53040240-53040487(-)$1	1	147	182	12.6584
(((((((.....((((......))))....)))))	chr13:96642353-96642624(-)$1	1	62	97	13.2978
..((((((.(..((((......)))))))))))))	chr3:172118251-172118583(+)$1	1	156	191	13.1953
.(((((((.....((((.....))))..)))))))	chr12:69663537-69663765(+)$1	1	186	221	12.1539
(...(((((((((((((.....))).))))))).)	chr19:23541047-23541335(-)$1	1	62	97	12.4148
((((((((((((.(((...))).))).))))))))	chr3:167726518-167726848(-)$1	1	259	294	12.8795
..((((((((((((((......)))))))..))))	chr17:56082387-56082623(-)$1	1	197	232	12.8051
(((((...((((((((((....))))))))))...	chr4:164440741-164441038(+)$1	1	188	223	11.5128
(.((((((((((((((.....)))).)))))))))	chr3:132384479-132384748(+)$1	1	174	209	12.9984
(....(((.((((((((((...))))))))))...	chr20:48250680-48250987(-)$1	1	251	286	12.6313
((((((.....(((((......)))))...)))))	chr6:4064697-4064961(+)$1	1	41	76	12.9100
((..((((.(((..((......))..))).)))).	chr17:25635509-25635775(+)$1	1	154	189	12.7035
..((((((((((.(((......))).....)))))	chr6:163985761-163986012(+)$1	1	32	67	13.6709

#PSSM
: : 0.13	d : 0.09	f : 0.09	c : 0.07	i : 0.07	g : 0.07	e : 0.07	h : 0.07	= : 0.05	" : 0.05	[ : 0.05	! : 0.03	$ : 0.01	+ : 0.01	E : 0.01	' : 0.01	b : 0.01	
g : 0.16	c : 0.11	e : 0.11	f : 0.09	d : 0.07	i : 0.07	= : 0.05	" : 0.05	h : 0.05	[ : 0.05	: : 0.03	! : 0.01	E : 0.01	b : 0.01	' : 0.01	# : 0.01	
g : 0.16	c : 0.13	e : 0.11	f : 0.11	= : 0.09	d : 0.07	i : 0.07	h : 0.05	" : 0.03	E : 0.01	b : 0.01	' : 0.01	: : 0.01	[ : 0.01	# : 0.01	! : 0.01	
g : 0.20	e : 0.13	" : 0.11	f : 0.11	c : 0.09	= : 0.09	i : 0.07	h : 0.05	d : 0.03	! : 0.03	[ : 0.01	# : 0.01	
g : 0.20	e : 0.11	c : 0.09	= : 0.09	f : 0.09	" : 0.07	i : 0.07	! : 0.05	h : 0.05	[ : 0.03	d : 0.03	# : 0.03	a : 0.01	
g : 0.22	e : 0.11	c : 0.11	" : 0.11	= : 0.09	i : 0.07	f : 0.07	h : 0.05	! : 0.05	d : 0.03	# : 0.03	
g : 0.20	c : 0.13	e : 0.11	f : 0.11	= : 0.09	i : 0.09	" : 0.05	d : 0.03	# : 0.03	h : 0.03	[ : 0.01	! : 0.01	& : 0.01	$ : 0.01	
g : 0.18	c : 0.11	e : 0.09	= : 0.09	i : 0.09	f : 0.07	" : 0.07	# : 0.05	d : 0.05	$ : 0.05	! : 0.03	[ : 0.03	& : 0.01	
[ : 0.16	= : 0.11	$ : 0.11	g : 0.09	e : 0.09	i : 0.09	c : 0.07	f : 0.05	# : 0.03	" : 0.03	! : 0.03	b : 0.01	d : 0.01	a : 0.01	& : 0.01	
c : 0.16	g : 0.13	= : 0.13	$ : 0.11	e : 0.09	f : 0.05	d : 0.05	i : 0.05	# : 0.03	b : 0.03	[ : 0.03	a : 0.03	" : 0.01	& : 0.01	
c : 0.16	$ : 0.11	g : 0.09	= : 0.09	e : 0.07	f : 0.07	# : 0.05	" : 0.05	d : 0.05	i : 0.05	! : 0.05	[ : 0.03	b : 0.01	a : 0.01	& : 0.01	
! : 0.16	c : 0.15	e : 0.11	g : 0.09	$ : 0.09	f : 0.07	= : 0.07	" : 0.05	i : 0.05	d : 0.03	# : 0.03	[ : 0.01	& : 0.01	
! : 0.16	[ : 0.16	d : 0.15	e : 0.11	g : 0.07	" : 0.05	$ : 0.05	c : 0.05	i : 0.03	# : 0.03	= : 0.03	f : 0.01	& : 0.01	
c : 0.45	d : 0.13	! : 0.07	e : 0.07	g : 0.07	i : 0.03	r : 0.03	= : 0.03	[ : 0.01	f : 0.01	a : 0.01	# : 0.01	
c : 0.50	d : 0.15	e : 0.07	g : 0.05	b : 0.03	i : 0.03	r : 0.03	= : 0.03	! : 0.01	a : 0.01	f : 0.01	
c : 0.49	d : 0.15	e : 0.07	g : 0.05	a : 0.03	b : 0.03	r : 0.03	= : 0.03	o : 0.01	i : 0.01	f : 0.01	[ : 0.01	
o : 0.66	c : 0.07	n : 0.07	l : 0.03	d : 0.03	r : 0.03	= : 0.03	i : 0.01	m : 0.01	
o : 0.66	n : 0.13	l : 0.05	m : 0.03	r : 0.03	= : 0.03	d : 0.01	c : 0.01	
o : 0.66	n : 0.13	l : 0.07	m : 0.05	r : 0.03	c : 0.01	= : 0.01	
o : 0.66	n : 0.13	l : 0.07	m : 0.05	c : 0.03	r : 0.03	
o : 0.66	n : 0.13	c : 0.05	l : 0.05	m : 0.03	r : 0.03	a : 0.01	
o : 0.64	c : 0.11	n : 0.05	d : 0.05	r : 0.03	l : 0.03	a : 0.01	] : 0.01	m : 0.01	
c : 0.52	d : 0.15	e : 0.07	] : 0.05	g : 0.05	b : 0.03	= : 0.03	a : 0.01	i : 0.01	f : 0.01	
c : 0.54	d : 0.16	e : 0.07	g : 0.05	b : 0.03	= : 0.03	2 : 0.01	i : 0.01	f : 0.01	] : 0.01	
c : 0.49	d : 0.16	2 : 0.09	e : 0.07	g : 0.05	= : 0.03	5 : 0.01	i : 0.01	f : 0.01	a : 0.01	
2 : 0.18	] : 0.11	d : 0.11	e : 0.09	4 : 0.09	5 : 0.07	c : 0.07	f : 0.05	g : 0.05	3 : 0.05	i : 0.03	= : 0.03	
2 : 0.15	4 : 0.13	e : 0.11	g : 0.09	f : 0.07	5 : 0.07	c : 0.07	3 : 0.07	a : 0.05	= : 0.05	d : 0.03	i : 0.03	] : 0.01	
3 : 0.15	4 : 0.13	g : 0.11	c : 0.11	f : 0.09	5 : 0.07	i : 0.07	] : 0.05	= : 0.05	e : 0.03	2 : 0.03	d : 0.03	a : 0.01	
g : 0.16	4 : 0.13	3 : 0.11	c : 0.11	f : 0.07	5 : 0.07	i : 0.07	e : 0.05	] : 0.05	= : 0.05	b : 0.03	d : 0.03	
g : 0.15	e : 0.15	= : 0.11	3 : 0.09	i : 0.09	f : 0.07	c : 0.07	5 : 0.05	] : 0.05	b : 0.03	d : 0.03	4 : 0.03	2 : 0.01	
g : 0.18	e : 0.16	= : 0.13	f : 0.13	i : 0.11	c : 0.07	2 : 0.03	] : 0.03	d : 0.03	h : 0.03	3 : 0.01	5 : 0.01	
g : 0.20	e : 0.15	= : 0.13	2 : 0.09	i : 0.09	f : 0.09	c : 0.05	h : 0.05	4 : 0.03	d : 0.03	] : 0.01	5 : 0.01	
g : 0.22	e : 0.15	= : 0.09	i : 0.09	c : 0.07	2 : 0.07	f : 0.07	4 : 0.05	h : 0.05	d : 0.03	3 : 0.03	5 : 0.01	
g : 0.18	e : 0.16	= : 0.09	i : 0.09	] : 0.07	f : 0.07	4 : 0.05	3 : 0.05	d : 0.05	h : 0.05	c : 0.03	a : 0.01	5 : 0.01	
g : 0.16	= : 0.09	f : 0.09	c : 0.07	e : 0.07	3 : 0.07	i : 0.07	4 : 0.05	d : 0.05	h : 0.05	2 : 0.03	] : 0.03	8 : 0.01	C : 0.01	G : 0.01	F : 0.01	5 : 0.01	

#score	711.6109063993806
#seq	53
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF036IYW_NSUN2_UTR_m1_run1.txt

#BEAR
gggga[bb!!ccc!!bbpppppppbb4444ccc22bb]a]	chr11:618793-619008(-)$1	215	154	194	28.9170
gggga[bb!!ccc!!bbpppppppbb4444ccc22bb]a]	chr11:618785-618993(-)$1	208	139	179	28.9170
ccccc[ccc!!ddddrrrrrrrrrdddd22cccccc]ccc	chr19:4724558-4724762(-)$1	204	46	86	29.2996
ddccc[ccc!!ddddrrrrrrrrrdddd22cccccc]ddd	chr19:4724562-4724772(-)$1	210	56	96	28.5077
ccccc[ccc!!ddddrrrrrrrrrdddd22cccccc]ccc	chr19:4724531-4724758(-)$1	227	42	82	29.2996

#otherMatches

#Seq PSSM
GGCACAGCACAGACCCCAGAGCCAGGAACCUCUCAGCCGA	chr11:618793-619008(-)$1	215	154	194	28.9170
GGCACAGCACAGACCCCAGAGCCAGGAACCUCUCAGCCGA	chr11:618785-618993(-)$1	208	139	179	28.9170
uccguaguguagcgguuaucacauucgccucacacgcgaa	chr19:4724558-4724762(-)$1	204	46	86	29.2996
uccguaguguagcgguuaucacauucgccucacacgcgaa	chr19:4724562-4724772(-)$1	210	56	96	28.5077
uccguaguguagcgguuaucacauucgccucacacgcgaa	chr19:4724531-4724758(-)$1	227	42	82	29.2996

#DB
(((((.((..(((..((.......))....)))..)).).	chr11:618793-619008(-)$1	1	154	194	28.9170
(((((.((..(((..((.......))....)))..)).).	chr11:618785-618993(-)$1	1	139	179	28.9170
(((((.(((..((((.........))))..)))))).)))	chr19:4724558-4724762(-)$1	1	46	86	29.2996
(((((.(((..((((.........))))..)))))).)))	chr19:4724562-4724772(-)$1	1	56	96	28.5077
(((((.(((..((((.........))))..)))))).)))	chr19:4724531-4724758(-)$1	1	42	82	29.2996

#PSSM
g : 0.40	c : 0.40	d : 0.20	
g : 0.40	c : 0.40	d : 0.20	
c : 0.60	g : 0.40	
c : 0.60	g : 0.40	
c : 0.60	a : 0.40	
[ : 1.00	
c : 0.60	b : 0.40	
c : 0.60	b : 0.40	
c : 0.60	! : 0.40	
! : 1.00	
! : 0.60	c : 0.40	
d : 0.60	c : 0.40	
d : 0.60	c : 0.40	
d : 0.60	! : 0.40	
d : 0.60	! : 0.40	
r : 0.60	b : 0.40	
r : 0.60	b : 0.40	
r : 0.60	p : 0.40	
r : 0.60	p : 0.40	
r : 0.60	p : 0.40	
r : 0.60	p : 0.40	
r : 0.60	p : 0.40	
r : 0.60	p : 0.40	
r : 0.60	p : 0.40	
d : 0.60	b : 0.40	
d : 0.60	b : 0.40	
d : 0.60	4 : 0.40	
d : 0.60	4 : 0.40	
2 : 0.60	4 : 0.40	
2 : 0.60	4 : 0.40	
c : 1.00	
c : 1.00	
c : 1.00	
c : 0.60	2 : 0.40	
c : 0.60	2 : 0.40	
c : 0.60	b : 0.40	
] : 0.60	b : 0.40	
] : 0.40	c : 0.40	d : 0.20	
a : 0.40	c : 0.40	d : 0.20	
] : 0.40	c : 0.40	d : 0.20	

#score	144.94109982674001
#seq	5
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_CDS_m3_run1.txt

#BEAR
ff[eeeeeuuuuuuuuuuuueeeee2	chr22:29383022-29383320(+)$1	298	223	249	22.7587
ccceeeeettttttttttteeeee]c	chr2:177134279-177134577(+)$1	298	225	251	23.4054
Egggggggtttttttttttggggggg	chr11:65386138-65386404(+)$1	266	220	246	23.9697
hhhhhhhhttttttttttthhhhhhh	chr12:56552310-56552614(+)$1	304	0	26	22.3853
::a[cccwwwwwwwwwwwwwwccc]a	chr14:35099006-35099392(-)$1	386	156	182	19.9146
bbfffffftttttttttttffffff:	chr6:52129442-52129707(-)$1	265	166	192	22.0425
"gggggggwwwwwwwwwwwwwwgggg	chr15:40706994-40707304(+)$1	310	98	124	22.5346
dd!!ddddvvvvvvvvvvvvvddddd	chr9:117014778-117015024(+)$1	246	17	43	21.8292
=========ssssssssss=======	chr7:897358-897607(+)$1	249	35	61	17.3858
ggggg[bbtttttttttttbbggggg	chr17:27050441-27050709(+)$1	268	135	161	24.4114
ccc[ddddtttttttttttdddd]cc	chr2:61455967-61456226(-)$1	259	163	189	22.8789
hhhhhhhhwwwwwwwwwwwwwwhhhh	chr15:89873379-89873613(-)$1	234	47	73	20.5966
========uuuuuuuuuuuu======	chr2:203164807-203165109(+)$1	302	194	220	24.9789
ffff[bbuuuuuuuuuuuubb]ffff	chr7:100843327-100843622(-)$1	295	14	40	22.1094
iiii[ccctttttttttttccc]iii	chr7:54823429-54823727(-)$1	298	83	109	25.2149
##ffffffwwwwwwwwwwwwwwffff	chr6:41060518-41060824(+)$1	306	216	242	21.1020
fff!!ccctttttttttttccc22ff	chr15:28510658-28510903(-)$1	245	11	37	23.6685
::eeeeewwwwwwwwwwwwwweeeee	chr17:40370022-40370303(-)$1	281	226	252	19.3081
!gggggggtttttttttttggggggg	chr20:62366462-62366691(+)$1	229	132	158	24.9797
========uuuuuuuuuuuu======	chr3:52721998-52722266(+)$1	268	68	94	24.9789
!gggggggtttttttttttggggggg	chr1:44451035-44451324(+)$1	289	99	125	24.9797
d::eeeeeuuuuuuuuuuuueeeee:	chr20:32661337-32661588(+)$1	251	52	78	19.8438
!gggggggtttttttttttggggggg	chr1:182354914-182355164(-)$1	250	51	77	24.9797
ff[dddduuuuuuuuuuuuddddfff	chr2:101619009-101619282(+)$1	273	176	202	21.4085
========ttttttttttt=======	chr17:63537552-63537828(-)$1	276	132	158	25.3162
eeee[cccwwwwwwwwwwwwwwccc]	chr11:124792516-124792792(-)$1	276	218	244	21.7218
c!!eeeeevvvvvvvvvvvvveeeee	chr16:57241837-57242106(+)$1	269	55	81	23.2174
eefffffftttttttttttffffff3	chr17:79864185-79864455(-)$1	270	78	104	23.2736
ddddcccvvvvvvvvvvvvvccchhh	chr16:87367760-87368013(-)$1	253	118	144	22.5029
eee!!ccctttttttttttccc22ee	chr16:88871987-88872299(+)$1	312	158	184	23.7385
eeeee[bbtttttttttttbb]eeee	chr9:140347133-140347387(-)$1	254	93	119	23.2539
c!!bbccctttttttttttccc]bb6	chr14:23528250-23528486(-)$1	236	178	204	22.9148
=!!eeeeevvvvvvvvvvvvveeeee	chr12:53410113-53410378(+)$1	265	128	154	23.2412
c[a[bbbbtttttttttttbb]bb]a	chr1:10336266-10336549(+)$1	283	148	174	22.7566
iiiiiiiuuuuuuuuuuuuiiiiiii	chr1:19487498-19487744(-)$1	246	39	65	24.1171
========vvvvvvvvvvvvv=====	chr2:97533513-97533796(-)$1	283	29	55	24.7038
hhhhhhhhttttttttttthhhhhhh	chr4:74000827-74001117(-)$1	290	42	68	22.3853
========wwwwwwwwwwwwww====	chrX:53571993-53572272(-)$1	279	109	135	22.8115
b[fffffftttttttttttffffff]	chrX:108908596-108908878(-)$1	282	134	160	23.5426
:ccc!!bbtttttttttttbb22ccc	chr16:28965752-28966004(+)$1	252	18	44	22.2836
Dgggggggtttttttttttggggggg	chr19:50332098-50332380(+)$1	282	13	39	23.9087
========uuuuuuuuuuuu======	chr9:116967952-116968174(+)$1	222	167	193	24.9789
eeeee[bbtttttttttttbb]eeee	chr1:16475430-16475668(-)$1	238	155	181	23.2539
hhhhhhhhttttttttttthhhhhhh	chr14:21559178-21559443(-)$1	265	160	186	22.3853
iiiiiivvvvvvvvvvvvviiiiiii	chr11:27393102-27393393(-)$1	291	109	135	23.4056
!!ffffffwwwwwwwwwwwwwwffff	chr20:32265238-32265455(-)$1	217	60	86	21.4075
eeeeecccwwwwwwwwwwwwwwccc]	chr5:179260106-179260384(+)$1	278	226	252	21.5792
b[fffffftttttttttttffffff]	chr9:140347365-140347616(-)$1	251	148	174	23.5426
ccc!!ccctttttttttttccc22cc	chr19:36103645-36103896(+)$1	251	206	232	24.1226
DDfffffftttttttttttffffff:	chr2:130911954-130912202(-)$1	248	170	196	20.2142
========uuuuuuuuuuuu======	chr9:116967974-116968188(+)$1	214	145	171	24.9789
hhhhhhhhttttttttttthhhhhhh	chr4:10022799-10023125(-)$1	326	216	242	22.3853

#otherMatches

#Seq PSSM
AUUUCAGCAUUCCUCAAAUAGUUGAU	chr22:29383022-29383320(+)$1	298	223	249	22.7587
CCGGCCCGGAUGGUGGAGGCGGGCAC	chr2:177134279-177134577(+)$1	298	225	251	23.4054
CUGGGGGUGAUGUUCUGAGGCCCCCA	chr11:65386138-65386404(+)$1	266	220	246	23.9697
GUGGGGUUGGAAAGACUGGGGCCCUG	chr12:56552310-56552614(+)$1	304	0	26	22.3853
CUGUCACUAAUGUCUCCCUUUGUGUC	chr14:35099006-35099392(-)$1	386	156	182	19.9146
GCUCAUGCGCAGUCAAUCGGCAUGAA	chr6:52129442-52129707(-)$1	265	166	192	22.0425
AACAUCCUGGGCCAUGAGAAUAAGGG	chr15:40706994-40707304(+)$1	310	98	124	22.5346
GCCCUCUGCACCUGCCUCCCACAGAG	chr9:117014778-117015024(+)$1	246	17	43	21.8292
CCUGUGUGUAGUGUGGGAAGCGUAUA	chr7:897358-897607(+)$1	249	35	61	17.3858
UCUCUACCCUAGGCCUGAUGGAGAGA	chr17:27050441-27050709(+)$1	268	135	161	24.4114
ACCCUGUUAUUAAUUAUGGAACAUGG	chr2:61455967-61456226(-)$1	259	163	189	22.8789
UUGUGGAGUGGAAGUUUAAUGUCUCC	chr15:89873379-89873613(-)$1	234	47	73	20.5966
CUGUUCUAAAAAACGCAAAAUAGAAC	chr2:203164807-203165109(+)$1	302	194	220	24.9789
CACCAGUAUCUCAUUGUCCGCAGGUG	chr7:100843327-100843622(-)$1	295	14	40	22.1094
CUGAUAGUUUUUUUCCCAUACUUUCA	chr7:54823429-54823727(-)$1	298	83	109	25.2149
GUGAAUGCCAAACAAUACCACCGUAU	chr6:41060518-41060824(+)$1	306	216	242	21.1020
CCUAUCUGUUUGAAGGCUCCAGUGAG	chr15:28510658-28510903(-)$1	245	11	37	23.6685
UUUGCCCUUCUGGCCUCUUCUGGGCA	chr17:40370022-40370303(-)$1	281	226	252	19.3081
AGACCCUGCAGAAGCAGACCAGGGUU	chr20:62366462-62366691(+)$1	229	132	158	24.9797
UUAGAGGUUACAGUUGCUCUACUUCU	chr3:52721998-52722266(+)$1	268	68	94	24.9789
GGGGUUCUUUGCCCUUCCUGGAGCCU	chr1:44451035-44451324(+)$1	289	99	125	24.9797
CUAAGCCUGACAGACCCAAGGGGCUA	chr20:32661337-32661588(+)$1	251	52	78	19.8438
AAGAGGGCAAGGCUUAAGGGCCUUCU	chr1:182354914-182355164(-)$1	250	51	77	24.9797
GCGAGAAGAAAAAGGGCCGUUCUGCC	chr2:101619009-101619282(+)$1	273	176	202	21.4085
CUGUCUUUUCCUUUCCCUUAGAGAUG	chr17:63537552-63537828(-)$1	276	132	158	25.3162
CAGAACUGGGCGACAAGGAAAACAGC	chr11:124792516-124792792(-)$1	276	218	244	21.7218
ACCUCCAGUUUGAAUUCUUAUUUGGA	chr16:57241837-57242106(+)$1	269	55	81	23.2174
AGAGGCCCUACAUCAUCGCGGGCUUA	chr17:79864185-79864455(-)$1	270	78	104	23.2736
CAGGGCGACCCCAACAUCCCCGCUGG	chr16:87367760-87368013(-)$1	253	118	144	22.5029
GCAAUGUUGGCCAGAUCAAAACCGUG	chr16:88871987-88872299(+)$1	312	158	184	23.7385
UGAGCAGCUCUUUGUCUCCGCAGCUC	chr9:140347133-140347387(-)$1	254	93	119	23.2539
UUAUGGCCACAGAGGGAUAGGCACAG	chr14:23528250-23528486(-)$1	236	178	204	22.9148
UGCCUUUUAAAACAGCAAAAAAGAAG	chr12:53410113-53410378(+)$1	265	128	154	23.2412
GCCCCGCGGAUAUCAACUACGAUGAG	chr1:10336266-10336549(+)$1	283	148	174	22.7566
UCAGGCAGUAUUUCCUCUGUGCUUGA	chr1:19487498-19487744(-)$1	246	39	65	24.1171
GGGCUCCUGGAAGGCCUGAUGAGGAG	chr2:97533513-97533796(-)$1	283	29	55	24.7038
UUUAAGAAGUCUUUAAAUAUUUUUGA	chr4:74000827-74001117(-)$1	290	42	68	22.3853
GGGGAGUCUCUGAACACUUGCUGACU	chrX:53571993-53572272(-)$1	279	109	135	22.8115
CUGUUACUUUUUCCCUCACAGUAACU	chrX:108908596-108908878(-)$1	282	134	160	23.5426
CUCCGUGGUCUCCUCCUUUCCUAGGA	chr16:28965752-28966004(+)$1	252	18	44	22.2836
GUUGCUUCUGAUUCCAUGUGAGGCGG	chr19:50332098-50332380(+)$1	282	13	39	23.9087
GUGGCCAUGGUGAUGUGAAGAUGGCC	chr9:116967952-116968174(+)$1	222	167	193	24.9789
CAUGCCGAUCUACAUGUACUCCGUGU	chr1:16475430-16475668(-)$1	238	155	181	23.2539
GUGUCCGCACUGCGACUACGCGGGCA	chr14:21559178-21559443(-)$1	265	160	186	22.3853
UAAGGUUUUAAUUAAACAUGCUUUGU	chr11:27393102-27393393(-)$1	291	109	135	23.4056
GAGUGACCCCCUAGAAGUCAAAGGUC	chr20:32265238-32265455(-)$1	217	60	86	21.4075
GCAGCCCCACUUACAAACCCGAGGGA	chr5:179260106-179260384(+)$1	278	226	252	21.5792
CAGGACUCCGCCCCAACCCGAGUCCA	chr9:140347365-140347616(-)$1	251	148	174	23.5426
GAGAACUCCACCCCUCAUUGAGGACU	chr19:36103645-36103896(+)$1	251	206	232	24.1226
GAGCUGGUCAUCCCCCACCGCCAGCA	chr2:130911954-130912202(-)$1	248	170	196	20.2142
GUGGCCAUGGUGAUGUGAAGAUGGCC	chr9:116967974-116968188(+)$1	214	145	171	24.9789
AGAAAGGUAACUACGGACAGCUUUUC	chr4:10022799-10023125(-)$1	326	216	242	22.3853

#DB
((.(((((............))))).	chr22:29383022-29383320(+)$1	1	223	249	22.7587
((((((((...........))))).)	chr2:177134279-177134577(+)$1	1	225	251	23.4054
)(((((((...........)))))))	chr11:65386138-65386404(+)$1	1	220	246	23.9697
((((((((...........)))))))	chr12:56552310-56552614(+)$1	1	0	26	22.3853
..(.(((..............))).)	chr14:35099006-35099392(-)$1	1	156	182	19.9146
))((((((...........)))))).	chr6:52129442-52129707(-)$1	1	166	192	22.0425
.(((((((..............))))	chr15:40706994-40707304(+)$1	1	98	124	22.5346
((..((((.............)))))	chr9:117014778-117015024(+)$1	1	17	43	21.8292
(((((((((..........)))))))	chr7:897358-897607(+)$1	1	35	61	17.3858
(((((.((...........)))))))	chr17:27050441-27050709(+)$1	1	135	161	24.4114
(((.((((...........)))).))	chr2:61455967-61456226(-)$1	1	163	189	22.8789
((((((((..............))))	chr15:89873379-89873613(-)$1	1	47	73	20.5966
((((((((............))))))	chr2:203164807-203165109(+)$1	1	194	220	24.9789
((((.((............)).))))	chr7:100843327-100843622(-)$1	1	14	40	22.1094
((((.(((...........))).)))	chr7:54823429-54823727(-)$1	1	83	109	25.2149
..((((((..............))))	chr6:41060518-41060824(+)$1	1	216	242	21.1020
(((..(((...........)))..))	chr15:28510658-28510903(-)$1	1	11	37	23.6685
..(((((..............)))))	chr17:40370022-40370303(-)$1	1	226	252	19.3081
.(((((((...........)))))))	chr20:62366462-62366691(+)$1	1	132	158	24.9797
((((((((............))))))	chr3:52721998-52722266(+)$1	1	68	94	24.9789
.(((((((...........)))))))	chr1:44451035-44451324(+)$1	1	99	125	24.9797
)..(((((............))))).	chr20:32661337-32661588(+)$1	1	52	78	19.8438
.(((((((...........)))))))	chr1:182354914-182355164(-)$1	1	51	77	24.9797
((.((((............)))))))	chr2:101619009-101619282(+)$1	1	176	202	21.4085
((((((((...........)))))))	chr17:63537552-63537828(-)$1	1	132	158	25.3162
((((.(((..............))).	chr11:124792516-124792792(-)$1	1	218	244	21.7218
(..(((((.............)))))	chr16:57241837-57242106(+)$1	1	55	81	23.2174
((((((((...........)))))).	chr17:79864185-79864455(-)$1	1	78	104	23.2736
))))(((.............)))(((	chr16:87367760-87368013(-)$1	1	118	144	22.5029
(((..(((...........)))..))	chr16:88871987-88872299(+)$1	1	158	184	23.7385
(((((.((...........)).))))	chr9:140347133-140347387(-)$1	1	93	119	23.2539
(..(((((...........))).)).	chr14:23528250-23528486(-)$1	1	178	204	22.9148
(..(((((.............)))))	chr12:53410113-53410378(+)$1	1	128	154	23.2412
(.(.((((...........)).)).)	chr1:10336266-10336549(+)$1	1	148	174	22.7566
(((((((............)))))))	chr1:19487498-19487744(-)$1	1	39	65	24.1171
((((((((.............)))))	chr2:97533513-97533796(-)$1	1	29	55	24.7038
((((((((...........)))))))	chr4:74000827-74001117(-)$1	1	42	68	22.3853
((((((((..............))))	chrX:53571993-53572272(-)$1	1	109	135	22.8115
(.((((((...........)))))).	chrX:108908596-108908878(-)$1	1	134	160	23.5426
.(((..((...........))..)))	chr16:28965752-28966004(+)$1	1	18	44	22.2836
((((((((...........)))))))	chr19:50332098-50332380(+)$1	1	13	39	23.9087
((((((((............))))))	chr9:116967952-116968174(+)$1	1	167	193	24.9789
(((((.((...........)).))))	chr1:16475430-16475668(-)$1	1	155	181	23.2539
((((((((...........)))))))	chr14:21559178-21559443(-)$1	1	160	186	22.3853
((((((.............)))))))	chr11:27393102-27393393(-)$1	1	109	135	23.4056
..((((((..............))))	chr20:32265238-32265455(-)$1	1	60	86	21.4075
((((((((..............))).	chr5:179260106-179260384(+)$1	1	226	252	21.5792
(.((((((...........)))))).	chr9:140347365-140347616(-)$1	1	148	174	23.5426
(((..(((...........)))..))	chr19:36103645-36103896(+)$1	1	206	232	24.1226
))((((((...........)))))).	chr2:130911954-130912202(-)$1	1	170	196	20.2142
((((((((............))))))	chr9:116967974-116968188(+)$1	1	145	171	24.9789
((((((((...........)))))))	chr4:10022799-10023125(-)$1	1	216	242	22.3853

#PSSM
= : 0.17	c : 0.11	e : 0.11	h : 0.09	f : 0.07	! : 0.07	: : 0.05	b : 0.05	d : 0.05	i : 0.05	D : 0.03	E : 0.01	" : 0.01	g : 0.01	# : 0.01	
= : 0.15	g : 0.13	e : 0.11	h : 0.09	f : 0.07	c : 0.07	! : 0.07	: : 0.05	i : 0.05	[ : 0.05	d : 0.03	b : 0.01	# : 0.01	D : 0.01	
f : 0.17	= : 0.15	g : 0.13	e : 0.11	h : 0.09	c : 0.07	! : 0.07	i : 0.05	[ : 0.03	a : 0.03	: : 0.01	d : 0.01	
e : 0.19	f : 0.15	= : 0.15	g : 0.13	h : 0.09	! : 0.07	[ : 0.05	i : 0.05	d : 0.03	b : 0.01	c : 0.01	
e : 0.17	= : 0.15	g : 0.13	f : 0.13	h : 0.09	! : 0.07	d : 0.05	[ : 0.05	c : 0.03	b : 0.03	i : 0.03	
c : 0.17	= : 0.15	f : 0.13	e : 0.11	g : 0.11	h : 0.09	d : 0.05	[ : 0.05	b : 0.03	i : 0.03	! : 0.01	
c : 0.17	= : 0.15	f : 0.13	e : 0.11	g : 0.11	b : 0.11	h : 0.09	d : 0.05	i : 0.01	v : 0.01	
= : 0.15	f : 0.13	c : 0.13	g : 0.11	e : 0.09	h : 0.09	b : 0.09	u : 0.05	w : 0.03	d : 0.03	v : 0.03	
t : 0.51	u : 0.17	w : 0.17	v : 0.11	= : 0.01	
t : 0.51	u : 0.17	w : 0.17	v : 0.11	s : 0.01	
t : 0.51	u : 0.17	w : 0.17	v : 0.11	s : 0.01	
t : 0.51	u : 0.17	w : 0.17	v : 0.11	s : 0.01	
t : 0.51	u : 0.17	w : 0.17	v : 0.11	s : 0.01	
t : 0.51	u : 0.17	w : 0.17	v : 0.11	s : 0.01	
t : 0.51	u : 0.17	w : 0.17	v : 0.11	s : 0.01	
t : 0.51	u : 0.17	w : 0.17	v : 0.11	s : 0.01	
t : 0.51	u : 0.17	w : 0.17	v : 0.11	s : 0.01	
t : 0.51	u : 0.17	w : 0.17	v : 0.11	s : 0.01	
t : 0.51	u : 0.17	w : 0.17	v : 0.11	s : 0.01	
w : 0.17	u : 0.11	b : 0.11	g : 0.09	f : 0.09	v : 0.09	c : 0.09	h : 0.07	= : 0.03	d : 0.03	i : 0.03	e : 0.01	
w : 0.17	= : 0.11	b : 0.11	c : 0.11	g : 0.09	f : 0.09	h : 0.07	v : 0.07	e : 0.05	d : 0.03	i : 0.03	
c : 0.13	w : 0.13	= : 0.13	e : 0.11	g : 0.11	f : 0.09	h : 0.07	] : 0.07	d : 0.05	i : 0.03	2 : 0.01	
e : 0.15	f : 0.15	= : 0.15	g : 0.13	h : 0.09	c : 0.07	2 : 0.07	d : 0.05	] : 0.03	i : 0.03	b : 0.01	
f : 0.17	e : 0.15	= : 0.15	g : 0.13	h : 0.11	c : 0.07	i : 0.05	2 : 0.05	b : 0.03	d : 0.01	] : 0.01	
f : 0.19	e : 0.15	= : 0.15	g : 0.13	h : 0.11	c : 0.09	] : 0.05	i : 0.05	d : 0.01	b : 0.01	
= : 0.15	g : 0.13	h : 0.11	e : 0.11	f : 0.09	c : 0.07	] : 0.07	: : 0.05	i : 0.05	a : 0.03	2 : 0.01	d : 0.01	3 : 0.01	6 : 0.01	

#score	1189.611050179773
#seq	52
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_transcript_m3_run1.txt

#BEAR
dd[ccccccnnnnnccc]ccc	chr19:45412200-45412458(+)$1	258	6	27	9.4655
[ccc[ddddnnnnndddd]cc	chr9:116840313-116840548(-)$1	235	110	131	11.6074
dd!!ccc[annnnna]ccc]d	chr9:117002399-117002642(+)$1	243	3	24	10.2008
ddddeeeeennnnneeeee77	chr19:6710630-6710890(-)$1	260	146	167	12.4080
ffff!!cccnnnnnccc333f	chr1:230841798-230842043(-)$1	245	74	95	9.2152
ccc[eeeeennnnneeeee]c	chr9:116958143-116958389(+)$1	246	200	221	13.7985
[bb[eeeeennnnneeeee]b	chr19:18499322-18499636(+)$1	314	43	64	13.6523
:ddddddddnnnnndddd]dd	chr19:18499281-18499497(+)$1	216	84	105	10.0501
:ccc[ddddnnnnndddd]cc	chr1:173833904-173834110(-)$1	206	162	183	10.8303
[ccc[ddddnnnnnddddccc	chr5:138614432-138614648(+)$1	216	129	150	11.4565
[ccc[ddddnnnnnddddccc	chr5:138614427-138614632(+)$1	205	134	155	11.4565
ddd[eeeeennnnneeeee]d	chr9:117062261-117062503(+)$1	242	26	47	13.5279
d"""eeeeennnnneeeeedd	chr21:46897591-46897830(+)$1	239	23	44	13.6337
ff!!eeeeennnnneeeee]f	chr4:83816906-83817165(-)$1	259	216	237	13.4570
ddd[eeeeeooooooeeeeed	chr17:18965302-18965548(+)$1	246	3	24	9.5978
eeeeeddddnnnnndddd>>>	chr17:1655901-1656120(+)$1	219	118	139	10.7297
####eeeeennnnneeeee55	chr1:173835917-173836156(-)$1	239	103	124	13.2259
bb!!eeeeellleeeee4444	chr9:128003242-128003491(-)$1	249	37	58	9.0485
#bb[eeeeennnnneeeeebb	chr20:47896781-47897015(+)$1	234	178	199	13.0126
cc[a[eeeeellleeeeea]c	chr9:117052428-117052708(+)$1	280	230	251	8.9209
ffbb[ddddnnnnndddd22b	chr20:31596252-31596465(+)$1	213	47	68	10.5905
ddddaddddnnnnndddd]a]	chr17:79812989-79813207(-)$1	218	36	57	11.0259
:bb[eeeeennnnneeeee]b	chr6:132271532-132271758(-)$1	226	79	100	12.8752
hhhhaddddnnnnndddd22a	chr21:46910092-46910343(+)$1	251	161	182	10.3325
$$$$eeeeeooooooeeeee3	chr10:102112033-102112282(+)$1	249	194	215	9.7871
###eeeeeooooooeeeee22	chr5:137896632-137896840(-)$1	208	114	135	9.9391
bb[eeeeeooooooeeeee]b	chr1:19454029-19454320(-)$1	291	16	37	9.6454
:bb[eeeeennnnneeeee]b	chr19:45411737-45412018(+)$1	281	185	206	12.8752
d####ddddnnnnnddddddd	chr9:35072260-35072512(-)$1	252	68	89	11.7768
ddddaddddnnnnndddd]a]	chr17:79813007-79813226(-)$1	219	55	76	11.0259
%%%%eeeeennnnneeeee66	chr12:6619566-6619809(+)$1	243	44	65	11.4702
$$$$eeeeennnnneeeee55	chr17:26697113-26697386(-)$1	273	168	189	12.5041
iiiiiiiiinnnnniiiiiii	chr11:75111431-75111671(+)$1	240	66	87	9.4249
a####eeeeellleeeee444	chr4:155507323-155507616(-)$1	293	221	242	9.7075
""ccc[eeeeellleeeee]c	chr16:88851453-88851675(-)$1	222	38	59	8.5584
e"""eeeeennnnneeeee55	chr7:2671530-2671798(+)$1	268	186	207	13.0778
eccc!!cccnnnnnccccccf	chr2:54874165-54874387(+)$1	222	137	158	9.3975
e"""ddddannnnna]dddd3	chr9:116824911-116825127(-)$1	216	39	60	11.3218
ddd[eeeeennnnneeeee]d	chr10:95353498-95353742(-)$1	244	146	167	13.5279
####eeeeennnnneeeee55	chr1:173835956-173836170(-)$1	214	117	138	13.2259
cccc[ddddnnnnndddd]cc	chr1:173833910-173834142(-)$1	232	194	215	11.5019
:bb[eeeeennnnneeeeebb	chr17:76969076-76969292(-)$1	216	51	72	12.2070
:bb[eeeeennnnneeeeebb	chr17:76969118-76969330(-)$1	212	89	110	12.2070
dd[eeeeeooooooeeeee22	chr20:61461020-61461271(+)$1	251	190	211	9.5180
ddd!!ddddnnnnnddddddd	chr9:117005724-117005941(+)$1	217	54	75	11.4131
ddd[eeeeennnnneeeee]d	chr10:95353489-95353694(-)$1	205	98	119	13.5279
dd!!addddoooooodddd]a	chr16:15014074-15014344(+)$1	270	21	42	8.9662
[bb[eeeeennnnneeeee]b	chr19:45411893-45412148(+)$1	255	29	50	13.6523
b"""eeeeeooooooeeeeeb	chr6:43109569-43109847(+)$1	278	140	161	10.0786

#otherMatches

#Seq PSSM
CCAGCCGCUACAGGAGCGGGC	chr19:45412200-45412458(+)$1	258	6	27	9.4655
AGCGCUGGCCCUGUGCCAACG	chr9:116840313-116840548(-)$1	235	110	131	11.6074
augagauggaaacccggucag	chr9:117002399-117002642(+)$1	243	3	24	10.2008
UGGUGGCGUACUACACGCUGA	chr19:6710630-6710890(-)$1	260	146	167	12.4080
CCUGUCUCCUGUCUGGAUUUC	chr1:230841798-230842043(-)$1	245	74	95	9.2152
CAGGUCUUCAGGCAGAAGAGC	chr9:116958143-116958389(+)$1	246	200	221	13.7985
ACUUGCGGCCGCAAGCCGCCA	chr19:18499322-18499636(+)$1	314	43	64	13.6523
ACUUGCGGCCGCAAGCCGCCA	chr19:18499281-18499497(+)$1	216	84	105	10.0501
UUAUGCCCCGAAAAGGGGAAU	chr1:173833904-173834110(-)$1	206	162	183	10.8303
CCAAGCACUGUUUUGGUGUUG	chr5:138614432-138614648(+)$1	216	129	150	11.4565
CCAAGCACUGUUUUGGUGUUG	chr5:138614427-138614632(+)$1	205	134	155	11.4565
UGGCUGGCGGGACACGCUGAC	chr9:117062261-117062503(+)$1	242	26	47	13.5279
UGUGUGGGGCCCCACCCCAGC	chr21:46897591-46897830(+)$1	239	23	44	13.6337
CUUUGAAUGUUUUUCGUUUUA	chr4:83816906-83817165(-)$1	259	216	237	13.4570
ggaagagagguagcguuuucu	chr17:18965302-18965548(+)$1	246	3	24	9.5978
GGUCCGGCUGCCUAAGCUGUA	chr17:1655901-1656120(+)$1	219	118	139	10.7297
UGGACAGAAGGGAUUUCUGAA	chr1:173835917-173836156(-)$1	239	103	124	13.2259
GCUACGGCCUGUGGCUGGACU	chr9:128003242-128003491(-)$1	249	37	58	9.0485
UUGUCCCAGCUCCCCUGGGCA	chr20:47896781-47897015(+)$1	234	178	199	13.0126
GUGUAGGGGAACUUCCCCAGG	chr9:117052428-117052708(+)$1	280	230	251	8.9209
GGGUGGGCUGUUUUGGCUGAG	chr20:31596252-31596465(+)$1	213	47	68	10.5905
CUCCCUCCUCAUUCAGGACGU	chr17:79812989-79813207(-)$1	218	36	57	11.0259
AGAUGGUGCUCCCUGCAUCUU	chr6:132271532-132271758(-)$1	226	79	100	12.8752
GCCCCAGGUGAGUUGCCUUGG	chr21:46910092-46910343(+)$1	251	161	182	10.3325
UCAUUGCCAACACAAUGGCAU	chr10:102112033-102112282(+)$1	249	194	215	9.7871
GUUGAAGAUGCAGUUCUUCUU	chr5:137896632-137896840(-)$1	208	114	135	9.9391
GGGAUCUUGUUCAGAGGAUGC	chr1:19454029-19454320(-)$1	291	16	37	9.6454
GCGGACAUGGAGGACGUGUGC	chr19:45411737-45412018(+)$1	281	185	206	12.8752
GAAGAGCCGAGCCCCGGCCCA	chr9:35072260-35072512(-)$1	252	68	89	11.7768
CUCCCUCCUCAUUCAGGACGU	chr17:79813007-79813226(-)$1	219	55	76	11.0259
GUAGGAACAGGGCAUGUUCAG	chr12:6619566-6619809(+)$1	243	44	65	11.4702
CCCCUGAGACCCCUUCUCAUA	chr17:26697113-26697386(-)$1	273	168	189	12.5041
CUGUGCUGCGUUCUGUGGCAC	chr11:75111431-75111671(+)$1	240	66	87	9.4249
GAUAGCCCAGGCUCUGGGAAC	chr4:155507323-155507616(-)$1	293	221	242	9.7075
GAGGAGGGCGGGAGCCGCCGU	chr16:88851453-88851675(-)$1	222	38	59	8.5584
UGAAGCCCGCGCCCCGGGCCA	chr7:2671530-2671798(+)$1	268	186	207	13.0778
CCAGAUCUUAGAACAAGCUGU	chr2:54874165-54874387(+)$1	222	137	158	9.3975
AAUAGCGGCAAGGAGUCUGCA	chr9:116824911-116825127(-)$1	216	39	60	11.3218
GCUGAUCGUCCACAACGGUGA	chr10:95353498-95353742(-)$1	244	146	167	13.5279
UGGACAGAAGGGAUUUCUGAA	chr1:173835956-173836170(-)$1	214	117	138	13.2259
UUAUGCCCCGAAAAGGGGAAU	chr1:173833910-173834142(-)$1	232	194	215	11.5019
UUGACAGCCAGCGGGGCUGCG	chr17:76969076-76969292(-)$1	216	51	72	12.2070
UUGACAGCCAGCGGGGCUGCG	chr17:76969118-76969330(-)$1	212	89	110	12.2070
UGAGCCAUUGGCACAUGGCCC	chr20:61461020-61461271(+)$1	251	190	211	9.5180
UGUUGCAGGGUCAGCCUGGCA	chr9:117005724-117005941(+)$1	217	54	75	11.4131
GCUGAUCGUCCACAACGGUGA	chr10:95353489-95353694(-)$1	205	98	119	13.5279
GCCCGGCGCCUCACUGUGCAC	chr16:15014074-15014344(+)$1	270	21	42	8.9662
GCGGACAUGGAGGACGUGUGC	chr19:45411893-45412148(+)$1	255	29	50	13.6523
UACCAGGGCCACACAGCCCUA	chr6:43109569-43109847(+)$1	278	140	161	10.0786

#DB
((.((((((.....))).)))	chr19:45412200-45412458(+)$1	1	6	27	9.4655
.(((.((((.....)))).))	chr9:116840313-116840548(-)$1	1	110	131	11.6074
((..(((.(.....).))).)	chr9:117002399-117002642(+)$1	1	3	24	10.2008
(((((((((.....)))))..	chr19:6710630-6710890(-)$1	1	146	167	12.4080
((((..(((.....)))...)	chr1:230841798-230842043(-)$1	1	74	95	9.2152
(((.(((((.....))))).)	chr9:116958143-116958389(+)$1	1	200	221	13.7985
.((.(((((.....))))).)	chr19:18499322-18499636(+)$1	1	43	64	13.6523
.((((((((.....)))).))	chr19:18499281-18499497(+)$1	1	84	105	10.0501
.(((.((((.....)))).))	chr1:173833904-173834110(-)$1	1	162	183	10.8303
.(((.((((.....)))))))	chr5:138614432-138614648(+)$1	1	129	150	11.4565
.(((.((((.....)))))))	chr5:138614427-138614632(+)$1	1	134	155	11.4565
(((.(((((.....))))).)	chr9:117062261-117062503(+)$1	1	26	47	13.5279
(...(((((.....)))))))	chr21:46897591-46897830(+)$1	1	23	44	13.6337
((..(((((.....))))).)	chr4:83816906-83817165(-)$1	1	216	237	13.4570
(((.(((((......))))))	chr17:18965302-18965548(+)$1	1	3	24	9.5978
(((((((((.....))))...	chr17:1655901-1656120(+)$1	1	118	139	10.7297
....(((((.....)))))..	chr1:173835917-173836156(-)$1	1	103	124	13.2259
((..(((((...)))))....	chr9:128003242-128003491(-)$1	1	37	58	9.0485
.((.(((((.....)))))))	chr20:47896781-47897015(+)$1	1	178	199	13.0126
((.(.(((((...)))))).)	chr9:117052428-117052708(+)$1	1	230	251	8.9209
((((.((((.....))))..)	chr20:31596252-31596465(+)$1	1	47	68	10.5905
(((((((((.....)))).).	chr17:79812989-79813207(-)$1	1	36	57	11.0259
.((.(((((.....))))).)	chr6:132271532-132271758(-)$1	1	79	100	12.8752
(((((((((.....))))..)	chr21:46910092-46910343(+)$1	1	161	182	10.3325
....(((((......))))).	chr10:102112033-102112282(+)$1	1	194	215	9.7871
...(((((......)))))..	chr5:137896632-137896840(-)$1	1	114	135	9.9391
((.(((((......))))).)	chr1:19454029-19454320(-)$1	1	16	37	9.6454
.((.(((((.....))))).)	chr19:45411737-45412018(+)$1	1	185	206	12.8752
(....((((.....)))))))	chr9:35072260-35072512(-)$1	1	68	89	11.7768
(((((((((.....)))).).	chr17:79813007-79813226(-)$1	1	55	76	11.0259
....(((((.....)))))..	chr12:6619566-6619809(+)$1	1	44	65	11.4702
....(((((.....)))))..	chr17:26697113-26697386(-)$1	1	168	189	12.5041
(((((((((.....)))))))	chr11:75111431-75111671(+)$1	1	66	87	9.4249
(....(((((...)))))...	chr4:155507323-155507616(-)$1	1	221	242	9.7075
..(((.(((((...))))).)	chr16:88851453-88851675(-)$1	1	38	59	8.5584
(...(((((.....)))))..	chr7:2671530-2671798(+)$1	1	186	207	13.0778
)(((..(((.....))))))(	chr2:54874165-54874387(+)$1	1	137	158	9.3975
(...(((((.....).)))).	chr9:116824911-116825127(-)$1	1	39	60	11.3218
(((.(((((.....))))).)	chr10:95353498-95353742(-)$1	1	146	167	13.5279
....(((((.....)))))..	chr1:173835956-173836170(-)$1	1	117	138	13.2259
((((.((((.....)))).))	chr1:173833910-173834142(-)$1	1	194	215	11.5019
.((.(((((.....)))))))	chr17:76969076-76969292(-)$1	1	51	72	12.2070
.((.(((((.....)))))))	chr17:76969118-76969330(-)$1	1	89	110	12.2070
((.(((((......)))))..	chr20:61461020-61461271(+)$1	1	190	211	9.5180
(((..((((.....)))))))	chr9:117005724-117005941(+)$1	1	54	75	11.4131
(((.(((((.....))))).)	chr10:95353489-95353694(-)$1	1	98	119	13.5279
((..(((((......)))).)	chr16:15014074-15014344(+)$1	1	21	42	8.9662
.((.(((((.....))))).)	chr19:45411893-45412148(+)$1	1	29	50	13.6523
(...(((((......))))))	chr6:43109569-43109847(+)$1	1	140	161	10.0786

#PSSM
d : 0.28	: : 0.12	[ : 0.10	e : 0.08	# : 0.08	f : 0.06	c : 0.06	b : 0.06	$ : 0.04	h : 0.02	% : 0.02	i : 0.02	a : 0.02	" : 0.02	
d : 0.26	b : 0.18	c : 0.16	" : 0.10	# : 0.10	f : 0.06	$ : 0.04	e : 0.02	h : 0.02	% : 0.02	i : 0.02	
d : 0.18	c : 0.16	b : 0.16	# : 0.10	[ : 0.08	! : 0.08	" : 0.08	$ : 0.04	f : 0.02	e : 0.02	h : 0.02	% : 0.02	i : 0.02	
[ : 0.24	c : 0.16	! : 0.10	d : 0.08	" : 0.08	e : 0.08	# : 0.08	$ : 0.04	f : 0.02	a : 0.02	b : 0.02	h : 0.02	% : 0.02	i : 0.02	
e : 0.55	[ : 0.14	a : 0.08	c : 0.06	! : 0.06	d : 0.04	# : 0.04	i : 0.02	
e : 0.57	d : 0.30	c : 0.04	! : 0.04	i : 0.02	[ : 0.02	
e : 0.59	d : 0.30	c : 0.08	i : 0.02	
e : 0.59	d : 0.30	c : 0.06	[ : 0.02	i : 0.02	
e : 0.53	d : 0.28	c : 0.06	o : 0.06	a : 0.04	i : 0.02	
n : 0.77	o : 0.14	e : 0.06	l : 0.02	
n : 0.77	o : 0.14	l : 0.06	e : 0.02	
n : 0.77	o : 0.14	l : 0.08	
n : 0.77	o : 0.14	l : 0.06	e : 0.02	
n : 0.77	o : 0.14	e : 0.06	l : 0.02	
e : 0.53	d : 0.26	o : 0.08	c : 0.06	a : 0.04	i : 0.02	
e : 0.59	d : 0.28	c : 0.06	] : 0.04	i : 0.02	
e : 0.59	d : 0.30	c : 0.08	i : 0.02	
e : 0.57	d : 0.30	c : 0.04	] : 0.02	3 : 0.02	4 : 0.02	i : 0.02	
e : 0.53	] : 0.12	c : 0.10	d : 0.08	4 : 0.04	2 : 0.04	3 : 0.02	> : 0.02	a : 0.02	i : 0.02	
] : 0.28	c : 0.14	d : 0.10	5 : 0.08	2 : 0.08	e : 0.06	b : 0.06	4 : 0.04	a : 0.04	7 : 0.02	3 : 0.02	> : 0.02	6 : 0.02	i : 0.02	
b : 0.20	c : 0.18	d : 0.18	5 : 0.08	f : 0.06	4 : 0.04	] : 0.04	a : 0.04	3 : 0.04	2 : 0.04	7 : 0.02	> : 0.02	6 : 0.02	i : 0.02	

#score	554.4592999889882
#seq	49
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_transcript_m1_run1.txt

#BEAR
cc[a####bb[a!!bb!!cccooooooccc22bb22a]bb	chr17:55333798-55334024(+)$1	226	73	113	16.4238
ffffbbggggggg####cccoooooocccggggggg333b	chr3:49723541-49723747(-)$1	206	83	123	15.7961
[ddddcccddddiiiiiiiiiooooooiiiiiiiii22dd	chr17:79894658-79894942(-)$1	284	209	249	13.4767
===ggggggg####cccrrrrrrrrrccc333ggggggg:	chr1:39457293-39457576(+)$1	283	210	250	13.2418
gggggggggg!!a[cccddddnnnnndddd333ccc]a22	chr17:41059271-41059607(+)$1	336	275	315	15.0315
=============####cccooooooccc4444=======	chr14:24779602-24779852(+)$1	250	67	107	19.7690
[a[iiiiiiiii!!bb[ccc[a[ammmma]a]ccc]bb]i	chr8:134308644-134309022(-)$1	378	7	47	12.8592
a!!hhhhhhhh!!dddd[cccooooooccc22dddd4444	chr8:22423475-22423755(+)$1	280	25	65	14.4489
eeee!!bb[ccc[bb[cccccclllccc]ccc]bb]ccc]	chr3:48465216-48465446(-)$1	230	55	95	12.3442
ccc[==========[ffffffmmmmffffff]========	chr14:101194871-101195114(+)$1	243	106	146	13.2176
##bb[bb!!dddd$$$$$cccnnnnnccc333dddd22bb	chr19:5048826-5049100(+)$1	274	83	123	13.9529
b[a[a!!bb$$$$$dddd[bboooooobb]dddd4444bb	chr7:157689426-157689729(-)$1	303	109	149	12.8829
bb[=============[cccooooooccc22=========	chr8:41348128-41348486(+)$1	358	6	46	18.1468
]ccc]ddddggggggg!!cccooooooccc22gggggggF	chr11:70962095-70962403(-)$1	308	249	289	14.1999
c!!dddd!!ccc####eeeeeooooooeeeee4444ccc]	chr20:31046475-31046778(-)$1	303	254	294	14.8903
=======ccc[a!!a[a[cccnnnnnccc]a]a]a]ccc:	chr19:46368932-46369190(+)$1	258	83	123	17.2095
""dddd"""ccc[bb[a[bboooooobb]a]bb]ccc22d	chr19:47759943-47760198(+)$1	255	86	126	13.9064
gggg####a!!a[eeeee[cccmmmmccc22eeeee]a22	chr19:56198548-56198806(+)$1	258	107	147	13.4337
==========$$$$$bb[aooooooa]bb333========	chr2:242755383-242755690(+)$1	307	21	61	17.0862
iiiiiiiffffff[a[bb[cccoooooocccbb]a]ffff	chr19:2222952-2223260(+)$1	308	34	74	12.8752
dd!!dddd!!eeeee"""cccooooooccc22eeeee]dd	chr17:80230405-80230671(-)$1	266	171	211	14.1003
!!ccc"""bbccc[bb[cccooooooccc]bbccc]bb44	chr11:65380784-65381114(-)$1	330	38	78	15.1340
[bb"""bb"""eeeee[cccooooooccc]eeeee333bb	chr11:82869047-82869265(+)$1	218	123	163	14.1805
c[==========####ddddoooooodddd4444======	chr9:136665980-136666299(-)$1	319	147	187	17.9682
a[eeeee$$$$$ccc####bbnnnnnbb333ccc333eee	chr19:2330546-2330802(+)$1	256	137	177	13.9535
ffbb!!dddd####gggggggoooooogggggggdddd22	chr8:145026681-145026943(-)$1	262	121	161	13.5839
[a[iiiiiiiii[a[bb[cccmmmmccc]bb]a333iiii	chr18:74206790-74207070(-)$1	280	56	96	15.0902
==========[ccc[bb[cccmmmmccc]bb333ccc===	chr19:50359853-50360148(+)$1	295	224	264	15.1657
gggg[a[iiiiiiiiiddddoooooodddd22iiiiiiii	chr10:103598013-103598336(-)$1	323	117	157	15.6450
[a[ggggggg"""bb[bb[ccclllccc]bb]bb]ggggg	chrX:20284923-20285155(-)$1	232	20	60	13.2378
iiiiiiiii!!a"""ccc!!aooooooa22ccc4444a22	chr17:45918344-45918699(-)$1	355	62	102	17.5473
iiii"""ccc[a####eeeeemmmmeeeee333accc444	chr4:1804289-1804513(+)$1	224	168	208	14.5819
cc"""a[dddd!!gggggggooooooggggggg333dddd	chr19:18548022-18548307(-)$1	285	209	249	14.8686
====bb[ccc[a[dddd!!bbnnnnnbbdddd]a333ccc	chr14:105167798-105168054(+)$1	256	192	232	13.9392
a[eeeee[bb[bb!!a!!cccnnnnnccc22a22bb]bb]	chr2:230786363-230786626(-)$1	263	215	255	14.3434
$$$iiiiiiiii!!gggggggmmmmggggggg22iiiiii	chr16:88725297-88725553(-)$1	256	185	225	13.4064
ggggggg[ccc!!dddd"""bblllbb22dddd333ccc3	chr21:47564753-47564976(-)$1	223	10	50	12.1842
2cccffffff!!iiiiiiiiinnnnniiiiiiiii333ff	chr9:15463400-15463689(+)$1	289	103	143	13.8618
"ccc!!===========a[cccmmmmccc]a333======	chr9:102907000-102907322(+)$1	322	235	275	16.5258
iiiiii[ccc[bb"""a[ddddoooooodddd]a22bb]c	chr2:242447649-242447911(-)$1	262	3	43	14.0784
[iiiiiiiiiccc$$$$$cccnnnnnccc22ccc]iiiii	chr14:21945278-21945558(+)$1	280	70	110	16.8227
!!dddd####bb!!gggggggnnnnnggggggg22bb22d	chr22:37895348-37895613(-)$1	265	207	247	13.5712
ii"""dddd$$$$$bb!!a[annnnna]a22bb22dddd2	chr7:76178836-76179080(+)$1	244	46	86	13.3990
======="""dddd####cccnnnnnccc333dddd333=	chr8:28748177-28748542(+)$1	365	69	109	17.9730
e[dddd[dddd!!ccc[ddddoooooodddd]ccc333dd	chr12:133614134-133614431(+)$1	297	119	159	13.6916
dccceeeeeeeeee####cccnnnnnccc333eeeee22e	chr19:48283446-48283757(+)$1	311	138	178	14.1350
ccc$$$$$ccc[iiiiiiiiillliiiiiiiii333ccc3	chr13:113760337-113760610(+)$1	273	42	82	13.7224
ee!!ccc"""ccc[a[ggggggglllggggggg]accccc	chr2:32688188-32688452(+)$1	264	107	147	13.1673
ggggg"""bbbb!!gggggggnnnnnggggggg22bb]bb	chr3:184080822-184081065(+)$1	243	21	61	13.7443
"eeeee!!bb[a[===========lll===========]a	chr19:1592059-1592322(-)$1	263	132	172	14.2121
f[a!!ffffff"""a[ffffffnnnnnffffff]a333ff	chr1:150318871-150319156(+)$1	285	127	167	12.4518
ggg[ccc[bbeeeee[ddddoooooodddd22eeeee444	chr19:35491769-35492030(+)$1	261	85	125	13.2974
======="""dddd####ddddmmmmdddd4444dddd33	chr17:155912-156176(-)$1	264	126	166	13.8973
=============%%%%%%cccmmmmccc4444=======	chr20:33872369-33872574(-)$1	205	82	122	14.0263
iiiccc!!ccc[bb####cccnnnnnccc333bb]ccc22	chr19:50168136-50168490(-)$1	354	91	131	16.7937
gg!!ccc[gggggggbb!!bbnnnnnbb22bb]ggggggg	chr22:43410724-43410978(-)$1	254	37	77	13.1208

#otherMatches

#Seq PSSM
GGACGGGGGGGUGUGCGAGGCAGCGGGGCUGAGCUAAGCC	chr17:55333798-55334024(+)$1	226	73	113	16.4238
GAGGCUGGCGGGCUAGGGCUGAGUGGAGCGCCUGCUUAGA	chr3:49723541-49723747(-)$1	206	83	123	15.7961
GGUGCCAUCUGUGGGGGCUUUGGGCCAGGGGUCUCCGGAC	chr17:79894658-79894942(-)$1	284	209	249	13.4767
UGGAGGGGUGGACACCAAGAGGAAGAUGGGAAUACCUCUG	chr1:39457293-39457576(+)$1	283	210	250	13.2418
CUCUGGCCAUGCCAUGGGCACAGCAGGUGUAUACUACGUG	chr17:41059271-41059607(+)$1	336	275	315	15.0315
GAUCUGGGUUCCAAGAAGGAGUUGUGUUUGAGGUGGGGUC	chr14:24779602-24779852(+)$1	250	67	107	19.7690
GGGGUGCGCGCUGGACGUGGGUGCAGAAGGGACUAGguga	chr8:134308644-134309022(-)$1	378	7	47	12.8592
GAACCGCAGAGCCGUGUCCGGGAGGGACCGCAGCGCCACU	chr8:22423475-22423755(+)$1	280	25	65	14.4489
CCUCUCCGAGUACAGCCACCACUUCGUGAGUGCCUUUGCA	chr3:48465216-48465446(-)$1	230	55	95	12.3442
CAGCUCCUGUCUGCGUUCUCAGAGGUGGGGGGGCAGGUGG	chr14:101194871-101195114(+)$1	243	106	146	13.2176
AAGCAGGGGGGUCAGGGACAUGGGAGGUGGGGGACCAGCC	chr19:5048826-5049100(+)$1	274	83	123	13.9529
CGGGGAAUGGGAGACUCUGGGGUUCAUCUGGGAGGUGACA	chr7:157689426-157689729(-)$1	303	109	149	12.8829
GGGUUUGUGUUUCCCGGGCCGAACCGGGUUGUGGGGGGCG	chr8:41348128-41348486(+)$1	358	6	46	18.1468
GGGUGGUGGGGGGGUCAGGCGAAAGUACGUAAGGCUCUCG	chr11:70962095-70962403(-)$1	308	249	289	14.1999
UGAGGAGCAGCCCCUCAUUCCAGAGGAGGAAUCUAAGGCC	chr20:31046475-31046778(-)$1	303	254	294	14.8903
UUGGGGAGGUGUGAGGUGCACGUGGGGUGGGGCAGGGCCA	chr19:46368932-46369190(+)$1	258	83	123	17.2095
UUGGGUGGGUGGGCAGGGUCGGGGCGGGGCGUGGCCAGAG	chr19:47759943-47760198(+)$1	255	86	126	13.9064
GGGGAGGAGGAUGGGGGCAGCUAGGGAGUGAGCCCUGAGA	chr19:56198548-56198806(+)$1	258	107	147	13.4337
GGUCAGCUCCCAGAGCCGUGUUGAGAGGGGAAGGGGCUGA	chr2:242755383-242755690(+)$1	307	21	61	17.0862
UGUCUCUGGGGUUCGGAGUGCGAUGCGCUGCCUGCAAGCU	chr19:2222952-2223260(+)$1	308	34	74	12.8752
CUUGGAGCGGUGACUGAGUGCAAAUGAGCAAGGGUUAAGU	chr17:80230405-80230671(-)$1	266	171	211	14.1003
ACUACGAGCCCAGUGGGCAGGAUGAGCUGGCCCUGAGGAA	chr11:65380784-65381114(-)$1	330	38	78	15.1340
GCAGCCGCCUGUUAGGAGCCCAACAUGGCGCCUGAAAAGC	chr11:82869047-82869265(+)$1	218	123	163	14.1805
UGGGUGGGGGUCACCCGGGGCAGUCUCCUCUUUGGGCUCC	chr9:136665980-136666299(-)$1	319	147	187	17.9682
GUGGUGCGAGUGGCCCCAGGCAGAGAGUGAAGGCAGAGCA	chr19:2330546-2330802(+)$1	256	137	177	13.9535
GUGGGGCCCUUGGAGAUCUGGGGGGGAUUAGGUUAGGGAA	chr8:145026681-145026943(-)$1	262	121	161	13.5839
GUACUCUGGUGUGCGCCGCUGGGGGUAGGGGGGGAGGCGC	chr18:74206790-74207070(-)$1	280	56	96	15.0902
CAGAGGCCCCUCACCUAUGGCCAUGGCCUUGACUGUGGGG	chr19:50359853-50360148(+)$1	295	224	264	15.1657
UUUGAGGUCUUCACUGGCUGGGUUAACAGUGGCGGUGGGG	chr10:103598013-103598336(-)$1	323	117	157	15.6450
GUGAGCGGAAGUGGGGGAGCGCGCGGCGGUCGCUGUUCUG	chrX:20284923-20285155(-)$1	232	20	60	13.2378
GGCCCUGGCCAGAAGCGGAGGAGGUGGCACCCGGGACCGA	chr17:45918344-45918699(-)$1	355	62	102	17.5473
GGCAGAGACGUGCAUCCUGUGAAACCACAGCCACCGUGAA	chr4:1804289-1804513(+)$1	224	168	208	14.5819
CUUAAGGUGCCGGAGGUCUCAGGGGAGGGGCCUGGGGGCA	chr19:18548022-18548307(-)$1	285	209	249	14.8686
CUGCAGCUCACCUGCGUCAGCUGCGUGCGCGCCGUCAUGA	chr14:105167798-105168054(+)$1	256	192	232	13.9392
CGGGCCGGGGGUGGACGGGAGAGACGCUCGAGGGCGGCCG	chr2:230786363-230786626(-)$1	263	215	255	14.3434
UGGGGAGCGGGGACGGAGGUUGGCUGGCCUCCAGCUCUGC	chr16:88725297-88725553(-)$1	256	185	225	13.4064
GGCCUGCAAGAAUCUCAGGAACACAGUGAUGAGUGCUCUC	chr21:47564753-47564976(-)$1	223	10	50	12.1842
ggugggguggggugggguggggGUUAUCUAUCUCAAAAUU	chr9:15463400-15463689(+)$1	289	103	143	13.8618
auuugccuauuuuacaacaagaauuaucuagaucuuguag	chr9:102907000-102907322(+)$1	322	235	275	16.5258
CGCGGGCGCUGCAgagcgggccgggggaggccgggaugga	chr2:242447649-242447911(-)$1	262	3	43	14.0784
ACGUCCUUGCGGAAGUGACGGCAGUUCCGAGUCCAGUGGG	chr14:21945278-21945558(+)$1	280	70	110	16.8227
gaggcaagcgagaggugauuuguugugaaucacaccugau	chr22:37895348-37895613(-)$1	265	207	247	13.5712
GCGGGAGGUGAUGGCGGAGGCGAAGGGGCGACGGGACCUG	chr7:76178836-76179080(+)$1	244	46	86	13.3990
CUUUCUCUUCACUUAAAACAAUUUUUUUGGAGGGGUUUUG	chr8:28748177-28748542(+)$1	365	69	109	17.9730
GGUCUGGGGCGGGUUGGGGCUGGGCCGGGUCGUGAAGAUG	chr12:133614134-133614431(+)$1	297	119	159	13.6916
GGAGUGGGUGGGGACCUUACGUGUGCUGUUCUUCUCCUAA	chr19:48283446-48283757(+)$1	311	138	178	14.1350
AGCAUCCAGGCACAGGAGGGGAGGCCCUUCUUGGUGGCCC	chr13:113760337-113760610(+)$1	273	42	82	13.7224
ACUAUCAUCUGGGACAGUUGGGGAAGCCUCGACAGCCCUG	chr2:32688188-32688452(+)$1	264	107	147	13.1673
CGGGGUAGGGCUAGGGCCCGGCUUCUCUGGGCCAAGGAUC	chr3:184080822-184081065(+)$1	243	21	61	13.7443
CCCGUGAGACGCAGGGGGUGCCUUCUUGGGGCGCUCCUGG	chr19:1592059-1592322(-)$1	263	132	172	14.2121
GAGCUAUGGGAGGUGGGGAUGGUGCAUCUGUCCGUUCAUC	chr1:150318871-150319156(+)$1	285	127	167	12.4518
CCCUCCCACCGUCCUUGGCUGUUGCGGGUCUCGGGGCUGC	chr19:35491769-35492030(+)$1	261	85	125	13.2974
GGCAUGUUGGCGGUGGAGCUGGGGUUCCAGGGGGGCUGGG	chr17:155912-156176(-)$1	264	126	166	13.8973
CCGGUCCUGGGUCGGGAGGGGUGGGGGCCAGAGGAUUCAG	chr20:33872369-33872574(-)$1	205	82	122	14.0263
UUCGAUGAUGUGGGGGAGGGAGGAGGUCUAUACUGGCGGA	chr19:50168136-50168490(-)$1	354	91	131	16.7937
gcgccccgucagggccgccgcgccgAGCUCCGCGCCCUGA	chr22:43410724-43410978(-)$1	254	37	77	13.1208

#DB
((.(....((.(..((..(((......)))..))..).))	chr17:55333798-55334024(+)$1	1	73	113	16.4238
(((((((((((((....(((......))))))))))...)	chr3:49723541-49723747(-)$1	1	83	123	15.7961
.((((((((((((((((((((......)))))))))..))	chr17:79894658-79894942(-)$1	1	209	249	13.4767
)))(((((((....(((.........)))...))))))).	chr1:39457293-39457576(+)$1	1	210	250	13.2418
)))(((((((..(.(((((((.....))))...))).)..	chr17:41059271-41059607(+)$1	1	275	315	15.0315
(((((((((((((....(((......)))....)))))))	chr14:24779602-24779852(+)$1	1	67	107	19.7690
.(.(((((((((..((.(((.(.(....).).))).)).)	chr8:134308644-134309022(-)$1	1	7	47	12.8592
(..((((((((..((((.(((......)))..))))....	chr8:22423475-22423755(+)$1	1	25	65	14.4489
((((..((.(((.((.((((((...))).))).)).))).	chr3:48465216-48465446(-)$1	1	55	95	12.3442
(((.((((((((((.((((((....)))))).))))))))	chr14:101194871-101195114(+)$1	1	106	146	13.2176
..((.((..((((.....(((.....)))...))))..))	chr19:5048826-5049100(+)$1	1	83	123	13.9529
(.(.(..((.....((((.((......)).))))....))	chr7:157689426-157689729(-)$1	1	109	149	12.8829
((.(((((((((((((.(((......)))..)))))))))	chr8:41348128-41348486(+)$1	1	6	46	18.1468
.))).))))(((((((..(((......)))..))))))))	chr11:70962095-70962403(-)$1	1	249	289	14.1999
(..((((..(((....(((((......)))))....))).	chr20:31046475-31046778(-)$1	1	254	294	14.8903
)))))))(((.(..(.(.(((.....))).).).).))).	chr19:46368932-46369190(+)$1	1	83	123	17.2095
..((((...(((.((.(.((......)).).)).)))..)	chr19:47759943-47760198(+)$1	1	86	126	13.9064
((((....(..(.(((((.(((....)))..))))).)..	chr19:56198548-56198806(+)$1	1	107	147	13.4337
((((((((((.....((.(......).))...))))))))	chr2:242755383-242755690(+)$1	1	21	61	17.0862
)))))))((((((.(.((.(((......))))).).))))	chr19:2222952-2223260(+)$1	1	34	74	12.8752
((..((((..(((((...(((......)))..))))).))	chr17:80230405-80230671(-)$1	1	171	211	14.1003
..(((...(((((.((.(((......))).))))).))..	chr11:65380784-65381114(-)$1	1	38	78	15.1340
.((...((...(((((.(((......))).)))))...))	chr11:82869047-82869265(+)$1	1	123	163	14.1805
(.((((((((((....((((......))))....))))))	chr9:136665980-136666299(-)$1	1	147	187	17.9682
(.(((((.....(((....((.....))...)))...)))	chr19:2330546-2330802(+)$1	1	137	177	13.9535
((((..((((....(((((((......)))))))))))..	chr8:145026681-145026943(-)$1	1	121	161	13.5839
.(.(((((((((.(.((.(((....))).)).)...))))	chr18:74206790-74207070(-)$1	1	56	96	15.0902
((((((((((.(((.((.(((....))).))...))))))	chr19:50359853-50360148(+)$1	1	224	264	15.1657
((((.(.(((((((((((((......))))..))))))))	chr10:103598013-103598336(-)$1	1	117	157	15.6450
.(.(((((((...((.((.(((...))).)).)).)))))	chrX:20284923-20285155(-)$1	1	20	60	13.2378
(((((((((..(...(((..(......)..)))....)..	chr17:45918344-45918699(-)$1	1	62	102	17.5473
((((...(((.(....(((((....)))))...))))...	chr4:1804289-1804513(+)$1	1	168	208	14.5819
((...(.((((..(((((((......)))))))...))))	chr19:18548022-18548307(-)$1	1	209	249	14.8686
((((((.(((.(.((((..((.....)))))).)...)))	chr14:105167798-105168054(+)$1	1	192	232	13.9392
(.(((((.((.((..(..(((.....)))..)..)).)).	chr2:230786363-230786626(-)$1	1	215	255	14.3434
...(((((((((..(((((((....)))))))..))))))	chr16:88725297-88725553(-)$1	1	185	225	13.4064
(((((((.(((..((((...((...))..))))...))).	chr21:47564753-47564976(-)$1	1	10	50	12.1842
.)))((((((..(((((((((.....)))))))))...))	chr9:15463400-15463689(+)$1	1	103	143	13.8618
.(((..((((((((((((.(((....))).)...))))))	chr9:102907000-102907322(+)$1	1	235	275	16.5258
((((((.(((.((...(.((((......)))).)..)).)	chr2:242447649-242447911(-)$1	1	3	43	14.0784
.((((((((((((.....(((.....)))..))).)))))	chr14:21945278-21945558(+)$1	1	70	110	16.8227
..((((....((..(((((((.....)))))))..))..)	chr22:37895348-37895613(-)$1	1	207	247	13.5712
((...((((.....((..(.(.....).)..))..)))).	chr7:76178836-76179080(+)$1	1	46	86	13.3990
(((((((...((((....(((.....)))...))))...)	chr8:28748177-28748542(+)$1	1	69	109	17.9730
(.((((.((((..(((.((((......)))).)))...))	chr12:133614134-133614431(+)$1	1	119	159	13.6916
((((((((((((((....(((.....)))...)))))..)	chr19:48283446-48283757(+)$1	1	138	178	14.1350
(((.....(((.(((((((((...)))))))))...))).	chr13:113760337-113760610(+)$1	1	42	82	13.7224
((..(((...(((.(.(((((((...))))))).))))))	chr2:32688188-32688452(+)$1	1	107	147	13.1673
(((((...((((..(((((((.....)))))))..)).))	chr3:184080822-184081065(+)$1	1	21	61	13.7443
.(((((..((.(.(((((((((((...))))))))))).)	chr19:1592059-1592322(-)$1	1	132	172	14.2121
(.(..((((((...(.((((((.....)))))).)...))	chr1:150318871-150319156(+)$1	1	127	167	12.4518
(((.(((.(((((((.((((......))))..)))))...	chr19:35491769-35492030(+)$1	1	85	125	13.2974
(((((((...((((....((((....))))....))))..	chr17:155912-156176(-)$1	1	126	166	13.8973
(((((((((((((......(((....)))....)))))))	chr20:33872369-33872574(-)$1	1	82	122	14.0263
)))(((..(((.((....(((.....)))...)).)))..	chr19:50168136-50168490(-)$1	1	91	131	16.7937
((..(((.(((((((((..((.....))..)).)))))))	chr22:43410724-43410978(-)$1	1	37	77	13.1208

#PSSM
= : 0.16	g : 0.12	c : 0.10	[ : 0.10	i : 0.10	f : 0.05	a : 0.05	e : 0.05	" : 0.05	b : 0.03	d : 0.03	! : 0.03	# : 0.01	] : 0.01	$ : 0.01	2 : 0.01	
= : 0.16	c : 0.14	g : 0.12	i : 0.12	[ : 0.10	! : 0.07	a : 0.05	e : 0.05	f : 0.03	d : 0.03	b : 0.03	# : 0.01	" : 0.01	$ : 0.01	
= : 0.17	c : 0.12	g : 0.10	i : 0.10	[ : 0.08	! : 0.08	d : 0.07	e : 0.07	b : 0.05	a : 0.03	" : 0.03	f : 0.01	$ : 0.01	
= : 0.17	i : 0.14	g : 0.12	c : 0.10	d : 0.08	e : 0.07	! : 0.07	[ : 0.05	" : 0.05	b : 0.03	a : 0.01	f : 0.01	h : 0.01	$ : 0.01	
= : 0.17	i : 0.12	d : 0.10	g : 0.08	c : 0.08	! : 0.07	" : 0.07	e : 0.07	# : 0.03	b : 0.03	[ : 0.03	h : 0.01	a : 0.01	] : 0.01	f : 0.01	$ : 0.01	
= : 0.17	i : 0.12	d : 0.12	c : 0.08	g : 0.07	! : 0.07	" : 0.07	e : 0.07	b : 0.05	# : 0.03	a : 0.03	f : 0.03	h : 0.01	$ : 0.01	
= : 0.19	i : 0.10	g : 0.08	d : 0.08	[ : 0.08	c : 0.07	" : 0.07	# : 0.05	b : 0.05	! : 0.05	e : 0.05	f : 0.03	h : 0.01	$ : 0.01	
= : 0.14	i : 0.10	d : 0.10	" : 0.10	c : 0.08	g : 0.07	! : 0.07	[ : 0.07	# : 0.05	b : 0.05	f : 0.05	$ : 0.03	h : 0.01	e : 0.01	
= : 0.14	b : 0.12	c : 0.12	d : 0.10	i : 0.10	g : 0.08	" : 0.08	! : 0.05	f : 0.05	h : 0.01	[ : 0.01	a : 0.01	$ : 0.01	# : 0.01	e : 0.01	
c : 0.17	= : 0.14	b : 0.10	g : 0.10	d : 0.08	i : 0.08	" : 0.07	$ : 0.05	! : 0.05	f : 0.05	h : 0.01	# : 0.01	e : 0.01	
c : 0.16	[ : 0.14	d : 0.10	= : 0.10	! : 0.07	i : 0.07	$ : 0.07	g : 0.05	e : 0.05	# : 0.03	f : 0.03	" : 0.03	b : 0.03	h : 0.01	
a : 0.12	c : 0.12	! : 0.10	= : 0.10	d : 0.07	i : 0.07	$ : 0.07	e : 0.07	b : 0.07	g : 0.05	# : 0.03	" : 0.03	[ : 0.03	f : 0.01	
! : 0.17	[ : 0.10	# : 0.08	= : 0.08	c : 0.08	i : 0.07	e : 0.07	g : 0.05	d : 0.05	$ : 0.05	" : 0.05	b : 0.05	a : 0.01	f : 0.01	
! : 0.12	# : 0.12	d : 0.08	$ : 0.08	e : 0.08	i : 0.07	[ : 0.07	b : 0.07	= : 0.07	g : 0.05	c : 0.05	" : 0.05	a : 0.01	% : 0.01	
# : 0.16	b : 0.12	g : 0.12	i : 0.07	c : 0.07	d : 0.07	a : 0.07	e : 0.07	[ : 0.05	$ : 0.05	= : 0.05	" : 0.03	! : 0.01	% : 0.01	
# : 0.17	b : 0.14	[ : 0.14	g : 0.10	i : 0.07	c : 0.07	d : 0.07	= : 0.05	$ : 0.03	e : 0.03	" : 0.03	f : 0.01	a : 0.01	% : 0.01	
# : 0.12	d : 0.12	b : 0.10	g : 0.10	[ : 0.08	! : 0.07	c : 0.07	i : 0.05	e : 0.05	a : 0.05	f : 0.03	$ : 0.03	= : 0.03	" : 0.01	% : 0.01	
c : 0.14	[ : 0.12	! : 0.10	d : 0.10	g : 0.10	# : 0.08	i : 0.05	e : 0.05	f : 0.03	$ : 0.03	b : 0.03	" : 0.03	r : 0.01	a : 0.01	= : 0.01	% : 0.01	
c : 0.35	d : 0.12	g : 0.10	[ : 0.08	i : 0.05	! : 0.05	f : 0.03	e : 0.03	a : 0.03	r : 0.01	b : 0.01	# : 0.01	" : 0.01	= : 0.01	% : 0.01	
c : 0.44	d : 0.12	g : 0.10	b : 0.08	i : 0.05	f : 0.03	e : 0.03	r : 0.01	o : 0.01	! : 0.01	" : 0.01	[ : 0.01	= : 0.01	
c : 0.33	o : 0.19	b : 0.08	g : 0.08	d : 0.07	i : 0.05	f : 0.03	e : 0.03	a : 0.03	r : 0.01	[ : 0.01	= : 0.01	
o : 0.37	n : 0.26	c : 0.10	m : 0.08	d : 0.03	r : 0.01	a : 0.01	b : 0.01	l : 0.01	g : 0.01	= : 0.01	f : 0.01	
o : 0.41	n : 0.28	m : 0.16	l : 0.07	r : 0.01	[ : 0.01	g : 0.01	= : 0.01	
o : 0.41	n : 0.28	m : 0.16	l : 0.08	r : 0.01	a : 0.01	= : 0.01	
o : 0.41	n : 0.28	m : 0.17	l : 0.08	r : 0.01	i : 0.01	
o : 0.39	n : 0.28	m : 0.08	c : 0.07	l : 0.03	r : 0.01	f : 0.01	a : 0.01	e : 0.01	g : 0.01	b : 0.01	i : 0.01	
c : 0.35	o : 0.21	d : 0.08	b : 0.08	g : 0.08	i : 0.03	m : 0.01	f : 0.01	] : 0.01	e : 0.01	a : 0.01	l : 0.01	n : 0.01	
c : 0.42	d : 0.10	b : 0.10	g : 0.10	i : 0.05	f : 0.03	e : 0.03	o : 0.03	m : 0.01	a : 0.01	2 : 0.01	] : 0.01	= : 0.01	
c : 0.37	d : 0.14	g : 0.10	] : 0.08	i : 0.05	2 : 0.05	a : 0.03	f : 0.03	b : 0.03	e : 0.03	3 : 0.01	= : 0.01	
d : 0.16	g : 0.12	3 : 0.12	2 : 0.12	c : 0.10	] : 0.10	i : 0.05	b : 0.05	4 : 0.03	f : 0.03	e : 0.03	a : 0.01	= : 0.01	
2 : 0.19	3 : 0.16	g : 0.12	d : 0.08	b : 0.08	4 : 0.07	i : 0.05	a : 0.05	c : 0.05	f : 0.03	e : 0.03	] : 0.01	= : 0.01	
3 : 0.17	g : 0.12	2 : 0.10	] : 0.10	b : 0.08	4 : 0.07	c : 0.07	d : 0.07	i : 0.05	e : 0.05	= : 0.03	a : 0.01	f : 0.01	
g : 0.14	b : 0.10	c : 0.10	4 : 0.08	d : 0.08	e : 0.08	i : 0.07	3 : 0.07	] : 0.07	= : 0.07	a : 0.03	2 : 0.03	f : 0.01	
c : 0.10	= : 0.10	3 : 0.10	g : 0.08	] : 0.08	e : 0.08	2 : 0.08	b : 0.07	d : 0.07	4 : 0.07	i : 0.05	a : 0.05	
= : 0.14	c : 0.12	3 : 0.10	2 : 0.08	d : 0.08	e : 0.08	g : 0.07	i : 0.07	a : 0.07	4 : 0.05	] : 0.05	b : 0.03	
3 : 0.17	= : 0.14	c : 0.10	d : 0.10	g : 0.08	] : 0.08	i : 0.07	e : 0.07	4 : 0.05	b : 0.05	2 : 0.03	
c : 0.17	3 : 0.14	= : 0.14	b : 0.08	g : 0.07	d : 0.07	i : 0.07	] : 0.05	4 : 0.05	e : 0.05	2 : 0.03	a : 0.01	f : 0.01	
= : 0.16	c : 0.14	3 : 0.10	2 : 0.08	g : 0.07	b : 0.07	4 : 0.07	d : 0.07	i : 0.07	] : 0.05	a : 0.05	f : 0.01	e : 0.01	
2 : 0.14	= : 0.14	c : 0.12	b : 0.10	d : 0.08	g : 0.07	4 : 0.07	i : 0.07	3 : 0.05	] : 0.05	f : 0.05	e : 0.01	
= : 0.16	b : 0.10	d : 0.10	2 : 0.10	i : 0.08	4 : 0.07	] : 0.05	f : 0.05	c : 0.05	3 : 0.05	: : 0.03	e : 0.03	g : 0.03	F : 0.01	a : 0.01	

#score	816.6167887963268
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_UTR_m2_run1.txt

#BEAR
==========lll==========	chr9:139729816-139730072(+)$1	256	25	48	10.6462
==========lll==========	chr3:9519600-9519847(+)$1	247	113	136	10.6462
eeeee"""bbmmmmbb333eeee	chr21:35469534-35469786(+)$1	252	87	110	8.3950
iiiiiiiiinnnnniiiiiiiii	chr15:45879553-45879806(+)$1	253	164	187	9.0132
"""bb!!cccmmmmccc22bbee	chr16:3074007-3074300(+)$1	293	189	212	9.8499
eeeee[ddddmmmmdddd333ee	chr6:76311783-76312086(+)$1	303	102	125	8.6033
gggggg!!ccclllccc22gggg	chr19:19021694-19021908(-)$1	214	109	132	9.2264
=====[a!!ammmma22a22===	chr7:132766625-132766894(-)$1	269	32	55	10.0449
c!!gggggggnnnnnggggggg2	chr22:21307182-21307411(+)$1	229	2	25	7.7378
bb[a[eeeeemmmmeeeee333a	chr6:111136358-111136629(-)$1	271	166	189	8.0567
ffff!!ddddmmmmddddfffff	chr11:62400420-62400652(-)$1	232	43	66	8.0584
=========oooooo========	chr17:27717286-27717589(+)$1	303	104	127	10.3958
hhhhhhhcccmmmmccc333hhh	chr1:235273956-235274203(-)$1	247	108	131	9.2232
==========mmmm=========	chr17:38286190-38286478(+)$1	288	84	107	11.7912
c[bb"""cccmmmmcccbbccc]	chr1:154600239-154600494(-)$1	255	156	179	9.8291
[iiiiiiiiimmmmiiiiiiiii	chr1:21069250-21069481(-)$1	231	194	217	11.2451
hhhh"""cccmmmmccc]hhhhh	chr6:34664385-34664665(-)$1	280	181	204	9.4455
eeee[eeeeemmmmeeeeeeeee	chr16:24802379-24802634(+)$1	255	136	159	7.3083
ffffff[cccmmmmccc]fffff	chr3:195635555-195635812(-)$1	257	33	56	9.0721
iiiiiiiiinnnnniiiiiiiii	chr3:122785876-122786221(+)$1	345	111	134	9.0132
bgggggggooooooggggggg22	chr1:10479966-10480214(+)$1	248	29	52	8.1579
dddd"""cccmmmmccc333ddd	chr18:56996000-56996209(-)$1	209	164	187	9.9527
d[ccc[ddddmmmmdddd]ccc]	chr3:38206942-38207236(+)$1	294	145	168	9.1317
ffffff[cccmmmmccc]fffff	chr3:196230254-196230506(-)$1	252	4	27	9.0721
iiiiiiiiooooooiiiiiiiii	chr6:86299097-86299392(-)$1	295	9	32	9.8211
[bb"""cccoooooocccbb]ee	chr3:9852212-9852441(+)$1	229	128	151	7.7898
!!ffffffccclllccc]fffff	chr4:39329076-39329319(-)$1	243	114	137	7.6330
dddbb!!cccmmmmccc333bb]	chr12:49666689-49666938(+)$1	249	185	208	9.9962
!!dddd[cccmmmmcccdddd44	chr5:53180041-53180290(-)$1	249	34	57	8.7287
####ffffffmmmmffffffagg	chr19:50363663-50363905(+)$1	242	210	233	7.9144
==========oooooo=======	chr17:79991773-79992024(+)$1	251	190	213	10.1188
f!!ddddcccmmmmccc22dddd	chr3:197611229-197611485(+)$1	256	156	179	8.6109
b[bb####bbmmmmbb4444bb]	chr11:33279175-33279506(+)$1	331	30	53	8.4055
ff####ddddmmmmdddd]ffff	chr11:85375878-85376113(-)$1	235	208	231	8.5885
ii####ddddmmmmddddiiiii	chr11:61089035-61089270(-)$1	235	194	217	9.7832
eeegggggggmmmmggggggg:d	chr3:49050517-49050787(+)$1	270	158	181	8.2792
#gggggggooooooggggggg33	chrX:153236493-153236760(-)$1	267	73	96	8.8522
!!ccc[cccooooooccc]ccc]	chr15:91445985-91446241(+)$1	256	182	205	9.2673
:ccc[a[cccmmmmccc]a]ccc	chr1:155658335-155658594(-)$1	259	110	133	9.2195
ddiiiiiiiiillliiiiiiiii	chr12:6879226-6879485(+)$1	259	38	61	9.3765
hh[gggggggmmmmggggggg22	chr12:56122310-56122595(-)$1	285	247	270	9.4857
ee####bb[ammmma]bb333ee	chr17:43225897-43226184(+)$1	287	177	200	8.7327
iiiiiiiiinnnnniiiiiiiii	chr10:1063236-1063501(+)$1	265	41	64	9.0132
""ccceeeeemmmmeeeee]ccc	chr10:98984362-98984618(-)$1	256	44	67	8.1310
iiiiiiiibbmmmmbb]iiiiii	chr11:62400452-62400676(-)$1	224	99	122	9.9836
e!!bb[ddddmmmmdddd]bb]e	chr22:22049865-22050118(+)$1	253	102	125	8.5332
[a[ccc[cccmmmmcccccc22a	chr17:76122910-76123196(-)$1	286	152	175	9.6675
cc[bb"""ccclllccc333bb]	chr17:35306289-35306565(+)$1	276	218	241	9.1120

#otherMatches

#Seq PSSM
GGGAGCAGAGGGGCUUUGUUUCC	chr9:139729816-139730072(+)$1	256	25	48	10.6462
GGGAAGAAGUAUCACUUCUUUCU	chr3:9519600-9519847(+)$1	247	113	136	10.6462
GGAAUUUUCAUGUUUGUUUAUUU	chr21:35469534-35469786(+)$1	252	87	110	8.3950
CGCCUGGUACGUACUAUCGGGUG	chr15:45879553-45879806(+)$1	253	164	187	9.0132
UCGGGACGGUACGCACCAGCCAC	chr16:3074007-3074300(+)$1	293	189	212	9.8499
GGCUGGGGGAAGUUUCUCAGGCA	chr6:76311783-76312086(+)$1	303	102	125	8.6033
CUCGCCCACGAGAGUCGGAGGUG	chr19:19021694-19021908(-)$1	214	109	132	9.2264
AGGCGGGAGCUCAGGACCGGCGC	chr7:132766625-132766894(-)$1	269	32	55	10.0449
GACUUUGGUCACCCAGACUAGAC	chr22:21307182-21307411(+)$1	229	2	25	7.7378
cggcgcgcgcgcgcgcgcgAGAG	chr6:111136358-111136629(-)$1	271	166	189	8.0567
AGCAGAAGCUCUGAAGCUUGUUU	chr11:62400420-62400652(-)$1	232	43	66	8.0584
CGGGCUCUGUGGCUUCAGGGCUC	chr17:27717286-27717589(+)$1	303	104	127	10.3958
AAAGUCUGGAGAAAUCCCAAAGA	chr1:235273956-235274203(-)$1	247	108	131	9.2232
GGUCUUUGGGUGUUCUCAGGGGC	chr17:38286190-38286478(+)$1	288	84	107	11.7912
AAGACCCGGUAAGAGCCUCUGUC	chr1:154600239-154600494(-)$1	255	156	179	9.8291
UCAUGAAUUCAUUGGAAUUUGUG	chr1:21069250-21069481(-)$1	231	194	217	11.2451
UCGCGAAGCUAGCUAGCAGCGGC	chr6:34664385-34664665(-)$1	280	181	204	9.4455
UUCUGCCAGUGAUAACUGGGGAG	chr16:24802379-24802634(+)$1	255	136	159	7.3083
GCUGGUGGGGAgggcccggccgg	chr3:195635555-195635812(-)$1	257	33	56	9.0721
CCAGCGGUGGGCAGCGCUGCUGG	chr3:122785876-122786221(+)$1	345	111	134	9.0132
CCUCUUGGGACUGACCAGGAGCU	chr1:10479966-10480214(+)$1	248	29	52	8.1579
UUCAGCUUAAAACUUUACCAUGA	chr18:56996000-56996209(-)$1	209	164	187	9.9527
CUGUCGCUGCUGCUGCGGAGGCC	chr3:38206942-38207236(+)$1	294	145	168	9.1317
GCGGUAAAGCGGAAGUUAUGCUG	chr3:196230254-196230506(-)$1	252	4	27	9.0721
aggucuuucagcauaaggaucuu	chr6:86299097-86299392(-)$1	295	9	32	9.8211
CUCACAUGAACCGGCUCAGAAAC	chr3:9852212-9852441(+)$1	229	128	151	7.7898
AUUUUGGAACUGGAAGUGUCCAA	chr4:39329076-39329319(-)$1	243	114	137	7.6330
UCACUGGUACGUGGGUGAGGGGA	chr12:49666689-49666938(+)$1	249	185	208	9.9962
AAAUCCACGUGGGGGCGGGGUGG	chr5:53180041-53180290(-)$1	249	34	57	8.7287
ACACGCUUCUGAGCAGGGGCCCC	chr19:50363663-50363905(+)$1	242	210	233	7.9144
AGGGAAGCCCCAGGAUGGGCUUC	chr17:79991773-79992024(+)$1	251	190	213	10.1188
gauuacaggcgugagccacugug	chr3:197611229-197611485(+)$1	256	156	179	8.6109
CAGCCAGagcagcagcagcagca	chr11:33279175-33279506(+)$1	331	30	53	8.4055
GACCAAGCUGCUGGCAGCCUCGG	chr11:85375878-85376113(-)$1	235	208	231	8.5885
GGCAUCAAAGGUAGCUUUUUUGG	chr11:61089035-61089270(-)$1	235	194	217	9.7832
AGGGUGUGACCUCAGUCACAUGC	chr3:49050517-49050787(+)$1	270	158	181	8.2792
GCUCCGCCAUUUCCGGCGGGGGA	chrX:153236493-153236760(-)$1	267	73	96	8.8522
GACUGGGCCCGGAGCGGCGCGGA	chr15:91445985-91446241(+)$1	256	182	205	9.2673
GGAGGUGGAGAAGGCUUGGGCUC	chr1:155658335-155658594(-)$1	259	110	133	9.2195
ACGGGGGCUCUGCCAGAGCUUCC	chr12:6879226-6879485(+)$1	259	38	61	9.3765
GGGGCGGGGUCCGGGCUUCGCGG	chr12:56122310-56122595(-)$1	285	247	270	9.4857
GUGGGAGGAGGUGGCGCCGGGAC	chr17:43225897-43226184(+)$1	287	177	200	8.7327
AGUAAAGCACUUGUUGCUUUGCU	chr10:1063236-1063501(+)$1	265	41	64	9.0132
UUGACCUAGUAUGAACUGGUGUC	chr10:98984362-98984618(-)$1	256	44	67	8.1310
CCAGGCCCCAUGUCUGUGGGUUU	chr11:62400452-62400676(-)$1	224	99	122	9.9836
CUUGGCCCUGUUUCCAGGACCUG	chr22:22049865-22050118(+)$1	253	102	125	8.5332
GUGGACAGCUGCCAGGCGUUGAA	chr17:76122910-76123196(-)$1	286	152	175	9.6675
CCGAGGAAGGUGAGGCCGGACUG	chr17:35306289-35306565(+)$1	276	218	241	9.1120

#DB
((((((((((...))))))))))	chr9:139729816-139730072(+)$1	1	25	48	10.6462
((((((((((...))))))))))	chr3:9519600-9519847(+)$1	1	113	136	10.6462
(((((...((....))...))))	chr21:35469534-35469786(+)$1	1	87	110	8.3950
(((((((((.....)))))))))	chr15:45879553-45879806(+)$1	1	164	187	9.0132
...((..(((....)))..))))	chr16:3074007-3074300(+)$1	1	189	212	9.8499
(((((.((((....))))...))	chr6:76311783-76312086(+)$1	1	102	125	8.6033
((((((..(((...)))..))))	chr19:19021694-19021908(-)$1	1	109	132	9.2264
(((((.(..(....)..)..)))	chr7:132766625-132766894(-)$1	1	32	55	10.0449
(..(((((((.....))))))).	chr22:21307182-21307411(+)$1	1	2	25	7.7378
((.(.(((((....)))))...)	chr6:111136358-111136629(-)$1	1	166	189	8.0567
((((..((((....)))))))))	chr11:62400420-62400652(-)$1	1	43	66	8.0584
(((((((((......))))))))	chr17:27717286-27717589(+)$1	1	104	127	10.3958
((((((((((....)))...)))	chr1:235273956-235274203(-)$1	1	108	131	9.2232
((((((((((....)))))))))	chr17:38286190-38286478(+)$1	1	84	107	11.7912
(.((...(((....)))))))).	chr1:154600239-154600494(-)$1	1	156	179	9.8291
.(((((((((....)))))))))	chr1:21069250-21069481(-)$1	1	194	217	11.2451
((((...(((....))).)))))	chr6:34664385-34664665(-)$1	1	181	204	9.4455
((((.(((((....)))))))))	chr16:24802379-24802634(+)$1	1	136	159	7.3083
((((((.(((....))).)))))	chr3:195635555-195635812(-)$1	1	33	56	9.0721
(((((((((.....)))))))))	chr3:122785876-122786221(+)$1	1	111	134	9.0132
((((((((......)))))))..	chr1:10479966-10480214(+)$1	1	29	52	8.1579
((((...(((....)))...)))	chr18:56996000-56996209(-)$1	1	164	187	9.9527
(.(((.((((....)))).))).	chr3:38206942-38207236(+)$1	1	145	168	9.1317
((((((.(((....))).)))))	chr3:196230254-196230506(-)$1	1	4	27	9.0721
((((((((......)))))))))	chr6:86299097-86299392(-)$1	1	9	32	9.8211
.((...(((......))))).))	chr3:9852212-9852441(+)$1	1	128	151	7.7898
..(((((((((...))).)))))	chr4:39329076-39329319(-)$1	1	114	137	7.6330
(((((..(((....)))...)).	chr12:49666689-49666938(+)$1	1	185	208	9.9962
..((((.(((....)))))))..	chr5:53180041-53180290(-)$1	1	34	57	8.7287
....((((((....)))))))))	chr19:50363663-50363905(+)$1	1	210	233	7.9144
((((((((((......)))))))	chr17:79991773-79992024(+)$1	1	190	213	10.1188
(..(((((((....)))..))))	chr3:197611229-197611485(+)$1	1	156	179	8.6109
(.((....((....))....)).	chr11:33279175-33279506(+)$1	1	30	53	8.4055
((....((((....)))).))))	chr11:85375878-85376113(-)$1	1	208	231	8.5885
((....((((....)))))))))	chr11:61089035-61089270(-)$1	1	194	217	9.7832
)))(((((((....))))))).(	chr3:49050517-49050787(+)$1	1	158	181	8.2792
.(((((((......)))))))..	chrX:153236493-153236760(-)$1	1	73	96	8.8522
..(((.(((......))).))).	chr15:91445985-91446241(+)$1	1	182	205	9.2673
.(((.(.(((....))).).)))	chr1:155658335-155658594(-)$1	1	110	133	9.2195
))(((((((((...)))))))))	chr12:6879226-6879485(+)$1	1	38	61	9.3765
((.(((((((....)))))))..	chr12:56122310-56122595(-)$1	1	247	270	9.4857
((....((.(....).))...))	chr17:43225897-43226184(+)$1	1	177	200	8.7327
(((((((((.....)))))))))	chr10:1063236-1063501(+)$1	1	41	64	9.0132
..((((((((....))))).)))	chr10:98984362-98984618(-)$1	1	44	67	8.1310
((((((((((....)).))))))	chr11:62400452-62400676(-)$1	1	99	122	9.9836
(..((.((((....)))).)).)	chr22:22049865-22050118(+)$1	1	102	125	8.5332
.(.(((.(((....))))))..)	chr17:76122910-76123196(-)$1	1	152	175	9.6675
((.((...(((...)))...)).	chr17:35306289-35306565(+)$1	1	218	241	9.1120

#PSSM
= : 0.12	e : 0.12	i : 0.12	f : 0.10	d : 0.08	c : 0.06	b : 0.06	h : 0.06	[ : 0.06	! : 0.06	" : 0.04	# : 0.04	g : 0.02	: : 0.02	
i : 0.14	= : 0.12	! : 0.12	e : 0.10	f : 0.08	g : 0.06	h : 0.06	[ : 0.06	d : 0.06	" : 0.04	b : 0.04	c : 0.04	# : 0.02	a : 0.02	
i : 0.14	= : 0.12	e : 0.08	[ : 0.08	f : 0.08	c : 0.08	# : 0.08	g : 0.06	! : 0.06	b : 0.06	d : 0.06	h : 0.04	" : 0.02	
i : 0.14	= : 0.12	b : 0.12	g : 0.12	c : 0.10	f : 0.08	# : 0.08	e : 0.06	d : 0.06	h : 0.04	a : 0.02	" : 0.02	
i : 0.14	= : 0.12	g : 0.12	b : 0.08	" : 0.08	f : 0.08	c : 0.08	# : 0.08	[ : 0.06	e : 0.04	d : 0.04	! : 0.02	h : 0.02	
i : 0.14	" : 0.12	g : 0.12	= : 0.10	[ : 0.10	f : 0.08	# : 0.08	! : 0.06	e : 0.06	d : 0.04	h : 0.02	a : 0.02	c : 0.02	
i : 0.14	d : 0.14	= : 0.10	" : 0.10	g : 0.10	[ : 0.10	! : 0.06	e : 0.06	c : 0.04	f : 0.04	a : 0.02	h : 0.02	# : 0.02	b : 0.02	
c : 0.29	i : 0.14	d : 0.12	= : 0.10	g : 0.10	e : 0.06	" : 0.04	! : 0.04	f : 0.04	# : 0.02	b : 0.02	
c : 0.35	d : 0.12	= : 0.10	i : 0.10	b : 0.06	g : 0.06	e : 0.06	o : 0.06	! : 0.02	f : 0.02	[ : 0.02	
c : 0.31	d : 0.12	o : 0.12	= : 0.08	b : 0.06	n : 0.06	g : 0.06	e : 0.06	a : 0.04	i : 0.04	f : 0.02	
m : 0.64	o : 0.14	n : 0.08	c : 0.06	l : 0.04	i : 0.02	
m : 0.64	o : 0.14	l : 0.12	n : 0.08	
m : 0.64	o : 0.14	l : 0.12	n : 0.08	
m : 0.64	o : 0.14	n : 0.08	l : 0.08	= : 0.04	
c : 0.31	i : 0.12	d : 0.12	o : 0.08	g : 0.08	= : 0.06	b : 0.06	e : 0.06	a : 0.04	n : 0.02	f : 0.02	
c : 0.35	i : 0.12	d : 0.12	g : 0.10	= : 0.08	b : 0.06	e : 0.06	2 : 0.02	f : 0.02	o : 0.02	] : 0.02	
c : 0.35	i : 0.12	d : 0.12	= : 0.10	g : 0.10	e : 0.06	3 : 0.02	2 : 0.02	f : 0.02	4 : 0.02	b : 0.02	] : 0.02	
i : 0.14	d : 0.14	= : 0.10	3 : 0.10	g : 0.10	] : 0.10	2 : 0.06	e : 0.06	c : 0.06	b : 0.04	a : 0.02	f : 0.02	4 : 0.02	
i : 0.16	3 : 0.14	= : 0.10	g : 0.10	f : 0.10	2 : 0.08	] : 0.08	e : 0.06	b : 0.04	h : 0.02	d : 0.02	4 : 0.02	a : 0.02	c : 0.02	
i : 0.16	3 : 0.14	g : 0.12	f : 0.12	= : 0.10	c : 0.08	b : 0.06	e : 0.04	d : 0.04	] : 0.04	2 : 0.02	h : 0.02	4 : 0.02	
i : 0.16	= : 0.12	g : 0.12	b : 0.10	f : 0.10	c : 0.10	3 : 0.06	d : 0.06	e : 0.04	h : 0.04	] : 0.02	a : 0.02	2 : 0.02	
i : 0.16	= : 0.12	e : 0.12	f : 0.10	c : 0.10	g : 0.06	2 : 0.06	b : 0.06	3 : 0.04	h : 0.04	d : 0.04	4 : 0.02	: : 0.02	] : 0.02	
i : 0.16	e : 0.14	= : 0.12	] : 0.12	f : 0.10	2 : 0.06	d : 0.06	g : 0.04	a : 0.04	h : 0.04	c : 0.04	4 : 0.02	3 : 0.02	

#score	438.9619186497294
#seq	48
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_transcript_m2_run1.txt

#BEAR
gggggg!!bbnnnnnbb22ggggggg	chr2:102338472-102338717(+)$1	245	185	211	14.4943
dd[ccc[cccnnnnnccc]ccc]ddd	chr19:34882664-34882872(+)$1	208	38	64	13.7781
==========oooooo==========	chr2:132041643-132041894(+)$1	251	214	240	9.5237
gg!!bb[cccnnnnnccc]bbggggg	chr17:76111217-76111463(-)$1	246	42	68	13.2139
$$$dddd!!annnnna22dddd]ccc	chr19:805790-806051(+)$1	261	46	72	12.2057
[iiiiiiiiinnnnniiiiiiiii]b	chr17:74554819-74555048(+)$1	229	15	41	13.5590
ddd[ccc!!annnnna22ccc]dddd	chr10:72505528-72505779(+)$1	251	20	46	13.0089
e[bbffffffnnnnnffffff]bbee	chr4:1342669-1342930(+)$1	261	164	190	10.8121
=======[bbnnnnnbb=========	chr17:76116794-76117062(-)$1	268	5	31	14.6996
gggggg!!bbnnnnnbb22ggggggg	chr15:45490776-45490992(-)$1	216	132	158	14.4943
dddd[eeeeennnnneeeeeddddcc	chr3:185531500-185531740(-)$1	240	102	128	11.3050
ciiiiiiiiinnnnniiiiiiiii]c	chr9:131025144-131025393(-)$1	249	118	144	13.6750
hhhhh"""bbnnnnnbb4444hhhhh	chr1:53749779-53750024(-)$1	245	88	114	12.1977
eeeee!!cccnnnnnccc22eeeee5	chr3:195502059-195502371(-)$1	312	11	37	11.5177
ee!!bb!!aannnnna]a22bb333e	chr7:26230680-26230930(-)$1	250	116	142	13.1804
ff[bb[a[bbnnnnnbb]a]bbffff	chr16:1543512-1543869(+)$1	357	147	173	12.3741
###gggggggnnnnnggggggg4444	chr16:88995858-88996137(-)$1	279	91	117	13.6927
ddd[bb!!bbnnnnnbb22bb]dddd	chr7:26233145-26233415(-)$1	270	202	228	12.8192
hhhhhhh[bbnnnnnbb]hhhhhhhh	chr11:65202543-65202789(+)$1	246	92	118	11.8420
gggggg[a[annnnna]a]ggggggg	chr11:65191226-65191431(+)$1	205	113	139	14.1787
"eeeee[cccnnnnnccc22eeeee4	chr8:56986292-56986545(-)$1	253	103	129	12.3623
####bb"""annnnna333bb4444d	chr16:30760372-30760730(+)$1	358	231	257	13.4111
dd[ccc[cccnnnnnccc]ccc]ddd	chr19:34882509-34882753(+)$1	244	193	219	13.7781
f[agggggggnnnnnggggggg]a]f	chr20:45885941-45886219(-)$1	278	62	88	13.4115
e!!dddd[bbnnnnnbbdddd4444e	chr15:69071858-69072105(-)$1	247	183	209	12.8750
[bbgggggggnnnnnggggggg]bb]	chr3:186502539-186502747(+)$1	208	64	90	12.8637
####dddd[annnnna]dddd333ff	chr17:61909469-61909689(-)$1	220	86	112	12.6269
[bbgggggggnnnnnggggggg]bb]	chr3:186502552-186502787(+)$1	235	51	77	12.8637
c[bb[eeeeennnnneeeee]bb]cc	chr1:161582402-161582645(+)$1	243	43	69	11.0496
dd[ccc[cccnnnnnccc]ccc]ddd	chr19:34882655-34882864(+)$1	209	47	73	13.7781
""ffffffbbnnnnnbb]ffffffhh	chr16:600962-601189(+)$1	227	121	147	12.3134
ddd[ccc!!annnnna22ccc]dddd	chr10:72505456-72505702(+)$1	246	92	118	13.0089
[bbgggggggnnnnnggggggg]bb]	chr3:186502524-186502739(+)$1	215	79	105	12.8637
bb"""eeeeennnnneeeee333bb2	chr19:34878769-34879039(+)$1	270	77	103	11.2943
EEccc!!cccnnnnnccc22cccggg	chr7:5568454-5568693(-)$1	239	88	114	11.4087
""ffffffbbnnnnnbb]ffffffhh	chr16:600886-601162(+)$1	276	148	174	12.3134
cc[dddd[bbnnnnnbb]dddd22cc	chr11:65194087-65194346(+)$1	259	188	214	12.8004
"ccc[eeeeennnnneeeee]cccdd	chr17:76200657-76200965(+)$1	308	198	224	12.0015
b[ccc[a[bbnnnnnbb]a]ccc]bb	chr17:19411442-19411667(+)$1	225	24	50	13.3778
dd[ccc[cccnnnnnccc]ccc]ddd	chr19:34882617-34882831(+)$1	214	85	111	13.7781
dd[ccc[cccnnnnnccc]ccc]ddd	chr19:34882674-34882888(+)$1	214	28	54	13.7781
ee[ddddcccnnnnnccc]dddd444	chr16:88996415-88996645(-)$1	230	111	137	12.4049
d[a"""ddddnnnnndddd4444a]d	chr3:185531450-185531693(-)$1	243	203	229	11.7959
!!ccc[ddddnnnnndddd]ccc22c	chr16:29822015-29822253(+)$1	238	16	42	12.1645
####ffffffnnnnnffffff4444f	chr1:19453922-19454203(-)$1	281	175	201	12.1462
dddd!!ddddnnnnndddddddd]ff	chr16:84111701-84112009(-)$1	308	252	278	10.9593
hhhhhhh[bbnnnnnbbhhhhhhhhd	chr17:76116991-76117214(-)$1	223	157	183	11.6571
[eeeee!!bbnnnnnbb22eeeeecc	chr19:49607543-49607795(+)$1	252	169	195	13.1666
!ggggggg[annnnna]ggggggg55	chr5:179048683-179048925(-)$1	242	26	52	12.5689
[dddd[ddddnnnnndddd]ddddff	chr15:45490691-45490922(-)$1	231	54	80	11.1102
!!ffffff[annnnna]ffffff22e	chr16:31196174-31196428(+)$1	254	180	206	12.1044
bb"""eeeeennnnneeeee333bb2	chr19:34878694-34878909(+)$1	215	152	178	11.2943
ddd[bb!!bbnnnnnbb22bb]dddd	chr7:26233101-26233345(-)$1	244	132	158	12.8192
#dddd[a[bbnnnnnbb]a]dddd55	chr9:19379314-19379566(-)$1	252	114	140	11.7207
ggg[ffffffnnnnnffffff]gggg	chr20:45886224-45886514(-)$1	290	188	214	12.2996
gggg[bb[annnnna]bb]ggggggg	chr22:19896850-19897211(-)$1	361	123	149	11.0338
ggg!!eeeeennnnneeeeegggggg	chrX:13330413-13330677(+)$1	264	4	30	12.4483
cccc[cccbbnnnnnbb]ccc]ccc2	chr16:600999-601277(+)$1	278	199	225	13.4827
ggggg"""bbnnnnnbb]ggggggg6	chr13:28828325-28828616(+)$1	291	228	254	13.9038
gggggg[a[annnnna]a]ggggggg	chr11:65191252-65191464(+)$1	212	87	113	14.1787

#otherMatches

#Seq PSSM
gaggcaagaaaaagauugaugccuuu	chr2:102338472-102338717(+)$1	245	185	211	14.4943
GGAUCUGGUAUUAAUUAUGAGAAUCU	chr19:34882664-34882872(+)$1	208	38	64	13.7781
augaggccuugccagugaggccuugu	chr2:132041643-132041894(+)$1	251	214	240	9.5237
CACCAGGGCUAGGGGGGCGCUUGUGG	chr17:76111217-76111463(-)$1	246	42	68	13.2139
CCGGGCGAGCGCGAGGACCGCCAGUG	chr19:805790-806051(+)$1	261	46	72	12.2057
AUUUUGGAUCGCUAGGAUUUAGGAAU	chr17:74554819-74555048(+)$1	229	15	41	13.5590
agaugcccucagcugguaggucucug	chr10:72505528-72505779(+)$1	251	20	46	13.0089
GUGCCGGGCGGUUGGCGUUUGUGCCG	chr4:1342669-1342930(+)$1	261	164	190	10.8121
GAGCUGAUACUGGUUGUUUAGCUCCG	chr17:76116794-76117062(-)$1	268	5	31	14.6996
ugguuaguacucugcguuguggccgc	chr15:45490776-45490992(-)$1	216	132	158	14.4943
GUGGUGCCUGGUGUGUAGGCCUGCCU	chr3:185531500-185531740(-)$1	240	102	128	11.3050
CCUCAGCAUGGGUGGUGUGCUGGGAG	chr9:131025144-131025393(-)$1	249	118	144	13.6750
CGGGUAUGUAGUAAGUAAGUGGCCCG	chr1:53749779-53750024(-)$1	245	88	114	12.1977
uauggguguggaagguaugacugugg	chr3:195502059-195502371(-)$1	312	11	37	11.5177
CCCCUCCCCCUCCAUGUGAAGAUUUG	chr7:26230680-26230930(-)$1	250	116	142	13.1804
gcuccaggucugguugggucgggucc	chr16:1543512-1543869(+)$1	357	147	173	12.3741
GUUUUUGCGUGGAUGAUGCAGAUGUG	chr16:88995858-88996137(-)$1	279	91	117	13.6927
UAUGACAACUAUGGAGGAGGUAAUAA	chr7:26233145-26233415(-)$1	270	202	228	12.8192
UAUUAUAUUAUGUGCUAUUGUAAUGG	chr11:65202543-65202789(+)$1	246	92	118	11.8420
AGGGUGGGGAGUGAAUGUGCACCCUU	chr11:65191226-65191431(+)$1	205	113	139	14.1787
UAUUGUGUUGAGUAACGGUGAUAAUU	chr8:56986292-56986545(-)$1	253	103	129	12.3623
uguguguguguguguCUUUCAAGUUC	chr16:30760372-30760730(+)$1	358	231	257	13.4111
GGAUCUGGUAUUAAUUAUGAGAAUCU	chr19:34882509-34882753(+)$1	244	193	219	13.7781
ugaguauaugguaaauguguauaugg	chr20:45885941-45886219(-)$1	278	62	88	13.4115
CCUGGUUUGUAAAUAGCAACCUAAAG	chr15:69071858-69072105(-)$1	247	183	209	12.8750
AUCUUUCGGGACUGACCUGAAAUGAA	chr3:186502539-186502747(+)$1	208	64	90	12.8637
GAGGUAUGGGGUAUGUGCAUGUGGAG	chr17:61909469-61909689(-)$1	220	86	112	12.6269
AUCUUUCGGGACUGACCUGAAAUGAA	chr3:186502552-186502787(+)$1	235	51	77	12.8637
UCGGGAAAGUCAUACGCUUUGCUUAU	chr1:161582402-161582645(+)$1	243	43	69	11.0496
GGAUCUGGUAUUAAUUAUGAGAAUCU	chr19:34882655-34882864(+)$1	209	47	73	13.7781
GAGGGCCCCGGUCGGUGAGGGUCCCC	chr16:600962-601189(+)$1	227	121	147	12.3134
agaugcccucagcugguaggucucug	chr10:72505456-72505702(+)$1	246	92	118	13.0089
AUCUUUCGGGACUGACCUGAAAUGAA	chr3:186502524-186502739(+)$1	215	79	105	12.8637
GUGGGCUCUUAUAUCAAGGGAAAGCC	chr19:34878769-34879039(+)$1	270	77	103	11.2943
UCUCUCUGACUAGGUGUCUAAGACAG	chr7:5568454-5568693(-)$1	239	88	114	11.4087
GAGGGCCCCGGUCGGUGAGGGUCCCC	chr16:600886-601162(+)$1	276	148	174	12.3134
UAGGUGGGGAGUACUUUGCCAUAAUA	chr11:65194087-65194346(+)$1	259	188	214	12.8004
GGUGGGCUUUAGGAGGAAGUGCAUCC	chr17:76200657-76200965(+)$1	308	198	224	12.0015
AGCGAUGCGGAGUCACCACUUUGGUG	chr17:19411442-19411667(+)$1	225	24	50	13.3778
GGAUCUGGUAUUAAUUAUGAGAAUCU	chr19:34882617-34882831(+)$1	214	85	111	13.7781
GGAUCUGGUAUUAAUUAUGAGAAUCU	chr19:34882674-34882888(+)$1	214	28	54	13.7781
UGCAGCUCUGGGUAUUGGUAGCUUUU	chr16:88996415-88996645(-)$1	230	111	137	12.4049
CACAUGAGCUUCGAUGGUUGUAGGGG	chr3:185531450-185531693(-)$1	243	203	229	11.7959
GAGCUGUCCCAAAGAGGGAAAGCGGU	chr16:29822015-29822253(+)$1	238	16	42	12.1645
GUAAGAAUAAAGCCAUUGUUCCCUGA	chr1:19453922-19454203(-)$1	281	175	201	12.1462
gcuuuguuucucugugaaaggguugu	chr16:84111701-84112009(-)$1	308	252	278	10.9593
GAGCUGAUACUGGUUGUUUAGCUCCG	chr17:76116991-76117214(-)$1	223	157	183	11.6571
GCCCUUCACCGGUUUGGGAGAGGGUU	chr19:49607543-49607795(+)$1	252	169	195	13.1666
GGCUUCAGCUGUGCAACUUGGAGCAU	chr5:179048683-179048925(-)$1	242	26	52	12.5689
ucguauagugguuaguacucugcguu	chr15:45490691-45490922(-)$1	231	54	80	11.1102
ggCUAUGGACAGCAGGACCGUGGAgg	chr16:31196174-31196428(+)$1	254	180	206	12.1044
GUGGGCUCUUAUAUCAAGGGAAAGCC	chr19:34878694-34878909(+)$1	215	152	178	11.2943
UAUGACAACUAUGGAGGAGGUAAUAA	chr7:26233101-26233345(-)$1	244	132	158	12.8192
GUCAGAGACGGUAAACGCCAUUGGUA	chr9:19379314-19379566(-)$1	252	114	140	11.7207
uaugguauaugaugaguauaugguau	chr20:45886224-45886514(-)$1	290	188	214	12.2996
gugaguagugugugagugguuaugug	chr22:19896850-19897211(-)$1	361	123	149	11.0338
AGUGAUUGUGUGCACCAUAAACUUAC	chrX:13330413-13330677(+)$1	264	4	30	12.4483
AGGGUCCCCAGUCGGUGAGGGUCCCG	chr16:600999-601277(+)$1	278	199	225	13.4827
GUUGUAUUACUUAAUGUCAUAAUAGU	chr13:28828325-28828616(+)$1	291	228	254	13.9038
AGGGUGGGGAGUGAAUGUGCACCCUU	chr11:65191252-65191464(+)$1	212	87	113	14.1787

#DB
((((((..((.....))..)))))))	chr2:102338472-102338717(+)$1	1	185	211	14.4943
((.(((.(((.....))).))).)))	chr19:34882664-34882872(+)$1	1	38	64	13.7781
((((((((((......))))))))))	chr2:132041643-132041894(+)$1	1	214	240	9.5237
((..((.(((.....))).)))))))	chr17:76111217-76111463(-)$1	1	42	68	13.2139
...((((..(.....)..)))).)))	chr19:805790-806051(+)$1	1	46	72	12.2057
.(((((((((.....))))))))).)	chr17:74554819-74555048(+)$1	1	15	41	13.5590
(((.(((..(.....)..))).))))	chr10:72505528-72505779(+)$1	1	20	46	13.0089
(.((((((((.....)))))).))))	chr4:1342669-1342930(+)$1	1	164	190	10.8121
(((((((.((.....)))))))))))	chr17:76116794-76117062(-)$1	1	5	31	14.6996
((((((..((.....))..)))))))	chr15:45490776-45490992(-)$1	1	132	158	14.4943
((((.(((((.....)))))))))))	chr3:185531500-185531740(-)$1	1	102	128	11.3050
((((((((((.....))))))))).)	chr9:131025144-131025393(-)$1	1	118	144	13.6750
(((((...((.....))....)))))	chr1:53749779-53750024(-)$1	1	88	114	12.1977
(((((..(((.....)))..))))).	chr3:195502059-195502371(-)$1	1	11	37	11.5177
((..((..((.....).)..))...)	chr7:26230680-26230930(-)$1	1	116	142	13.1804
((.((.(.((.....)).).))))))	chr16:1543512-1543869(+)$1	1	147	173	12.3741
...(((((((.....)))))))....	chr16:88995858-88996137(-)$1	1	91	117	13.6927
(((.((..((.....))..)).))))	chr7:26233145-26233415(-)$1	1	202	228	12.8192
(((((((.((.....)).))))))))	chr11:65202543-65202789(+)$1	1	92	118	11.8420
((((((.(.(.....).).)))))))	chr11:65191226-65191431(+)$1	1	113	139	14.1787
.(((((.(((.....)))..))))).	chr8:56986292-56986545(-)$1	1	103	129	12.3623
....((...(.....)...))....)	chr16:30760372-30760730(+)$1	1	231	257	13.4111
((.(((.(((.....))).))).)))	chr19:34882509-34882753(+)$1	1	193	219	13.7781
(.((((((((.....))))))).).)	chr20:45885941-45886219(-)$1	1	62	88	13.4115
(..((((.((.....))))))....)	chr15:69071858-69072105(-)$1	1	183	209	12.8750
.(((((((((.....))))))).)).	chr3:186502539-186502747(+)$1	1	64	90	12.8637
....((((.(.....).))))...))	chr17:61909469-61909689(-)$1	1	86	112	12.6269
.(((((((((.....))))))).)).	chr3:186502552-186502787(+)$1	1	51	77	12.8637
(.((.(((((.....))))).)).))	chr1:161582402-161582645(+)$1	1	43	69	11.0496
((.(((.(((.....))).))).)))	chr19:34882655-34882864(+)$1	1	47	73	13.7781
..((((((((.....)).))))))))	chr16:600962-601189(+)$1	1	121	147	12.3134
(((.(((..(.....)..))).))))	chr10:72505456-72505702(+)$1	1	92	118	13.0089
.(((((((((.....))))))).)).	chr3:186502524-186502739(+)$1	1	79	105	12.8637
((...(((((.....)))))...)).	chr19:34878769-34879039(+)$1	1	77	103	11.2943
(((((..(((.....)))..)))(((	chr7:5568454-5568693(-)$1	1	88	114	11.4087
..((((((((.....)).))))))))	chr16:600886-601162(+)$1	1	148	174	12.3134
((.((((.((.....)).))))..))	chr11:65194087-65194346(+)$1	1	188	214	12.8004
.(((.(((((.....))))).)))))	chr17:76200657-76200965(+)$1	1	198	224	12.0015
(.(((.(.((.....)).).))).))	chr17:19411442-19411667(+)$1	1	24	50	13.3778
((.(((.(((.....))).))).)))	chr19:34882617-34882831(+)$1	1	85	111	13.7781
((.(((.(((.....))).))).)))	chr19:34882674-34882888(+)$1	1	28	54	13.7781
((.(((((((.....))).))))...	chr16:88996415-88996645(-)$1	1	111	137	12.4049
(.(...((((.....))))....).)	chr3:185531450-185531693(-)$1	1	203	229	11.7959
..(((.((((.....)))).)))..)	chr16:29822015-29822253(+)$1	1	16	42	12.1645
....((((((.....))))))....)	chr1:19453922-19454203(-)$1	1	175	201	12.1462
((((..((((.....)))))))).))	chr16:84111701-84112009(-)$1	1	252	278	10.9593
(((((((.((.....))))))))))(	chr17:76116991-76117214(-)$1	1	157	183	11.6571
.(((((..((.....))..)))))))	chr19:49607543-49607795(+)$1	1	169	195	13.1666
.(((((((.(.....).)))))))..	chr5:179048683-179048925(-)$1	1	26	52	12.5689
.((((.((((.....)))).))))))	chr15:45490691-45490922(-)$1	1	54	80	11.1102
..((((((.(.....).))))))..)	chr16:31196174-31196428(+)$1	1	180	206	12.1044
((...(((((.....)))))...)).	chr19:34878694-34878909(+)$1	1	152	178	11.2943
(((.((..((.....))..)).))))	chr7:26233101-26233345(-)$1	1	132	158	12.8192
.((((.(.((.....)).).))))..	chr9:19379314-19379566(-)$1	1	114	140	11.7207
(((.((((((.....)))))).))))	chr20:45886224-45886514(-)$1	1	188	214	12.2996
((((.((.(.....).)).)))))))	chr22:19896850-19897211(-)$1	1	123	149	11.0338
(((..(((((.....)))))))))))	chrX:13330413-13330677(+)$1	1	4	30	12.4483
((((.(((((.....)).))).))).	chr16:600999-601277(+)$1	1	199	225	13.4827
(((((...((.....)).))))))).	chr13:28828325-28828616(+)$1	1	228	254	13.9038
((((((.(.(.....).).)))))))	chr11:65191252-65191464(+)$1	1	87	113	14.1787

#PSSM
d : 0.19	g : 0.15	[ : 0.09	e : 0.08	# : 0.08	c : 0.06	" : 0.06	h : 0.05	b : 0.05	! : 0.05	= : 0.03	f : 0.03	$ : 0.01	E : 0.01	
d : 0.21	g : 0.16	[ : 0.08	e : 0.08	b : 0.08	# : 0.06	h : 0.05	! : 0.05	c : 0.05	= : 0.03	i : 0.03	" : 0.03	$ : 0.01	f : 0.01	E : 0.01	
g : 0.15	[ : 0.13	d : 0.13	b : 0.08	c : 0.08	# : 0.06	! : 0.05	h : 0.05	e : 0.05	f : 0.05	= : 0.03	i : 0.03	a : 0.03	" : 0.03	$ : 0.01	
g : 0.19	c : 0.16	d : 0.13	[ : 0.08	! : 0.05	b : 0.05	h : 0.05	e : 0.05	# : 0.05	f : 0.05	" : 0.05	= : 0.03	i : 0.03	
g : 0.18	c : 0.16	d : 0.11	b : 0.09	f : 0.09	[ : 0.08	h : 0.05	e : 0.05	" : 0.05	= : 0.03	i : 0.03	! : 0.03	
g : 0.16	c : 0.13	e : 0.13	b : 0.09	f : 0.09	d : 0.08	[ : 0.08	" : 0.05	! : 0.05	= : 0.03	i : 0.03	h : 0.03	
[ : 0.15	d : 0.15	! : 0.13	f : 0.09	e : 0.09	g : 0.09	c : 0.05	" : 0.05	a : 0.05	= : 0.03	i : 0.03	h : 0.03	b : 0.01	
c : 0.18	! : 0.15	[ : 0.15	f : 0.09	e : 0.09	g : 0.09	d : 0.08	" : 0.05	i : 0.03	a : 0.03	= : 0.01	
b : 0.30	c : 0.16	e : 0.09	g : 0.08	[ : 0.08	d : 0.06	! : 0.05	f : 0.05	i : 0.03	a : 0.03	= : 0.01	" : 0.01	
b : 0.30	c : 0.16	a : 0.16	e : 0.09	g : 0.08	d : 0.06	f : 0.05	i : 0.03	= : 0.01	n : 0.01	
n : 0.98	o : 0.01	
n : 0.98	o : 0.01	
n : 0.98	o : 0.01	
n : 0.98	o : 0.01	
n : 0.96	o : 0.01	a : 0.01	
b : 0.30	c : 0.16	a : 0.16	e : 0.09	g : 0.08	d : 0.06	f : 0.05	i : 0.03	o : 0.01	] : 0.01	
b : 0.31	c : 0.16	e : 0.09	] : 0.09	g : 0.08	d : 0.06	2 : 0.05	f : 0.05	i : 0.03	= : 0.01	3 : 0.01	
c : 0.16	] : 0.15	2 : 0.13	e : 0.09	g : 0.09	d : 0.09	f : 0.06	a : 0.05	= : 0.03	i : 0.03	4 : 0.01	3 : 0.01	h : 0.01	b : 0.01	
] : 0.16	2 : 0.15	d : 0.13	g : 0.11	f : 0.09	e : 0.09	c : 0.05	a : 0.05	= : 0.03	i : 0.03	h : 0.03	4 : 0.01	3 : 0.01	
g : 0.19	c : 0.13	e : 0.11	d : 0.09	f : 0.09	] : 0.08	b : 0.06	2 : 0.06	= : 0.03	i : 0.03	4 : 0.03	h : 0.03	
g : 0.21	c : 0.18	d : 0.15	b : 0.09	f : 0.09	e : 0.05	= : 0.03	i : 0.03	4 : 0.03	h : 0.03	] : 0.03	3 : 0.03	
g : 0.23	c : 0.15	d : 0.11	] : 0.11	4 : 0.06	h : 0.05	e : 0.05	b : 0.05	3 : 0.05	f : 0.05	= : 0.03	i : 0.03	
g : 0.16	] : 0.16	d : 0.15	4 : 0.08	c : 0.08	3 : 0.06	f : 0.06	h : 0.05	e : 0.05	= : 0.03	i : 0.03	b : 0.03	2 : 0.01	
d : 0.19	g : 0.18	b : 0.09	4 : 0.08	c : 0.05	h : 0.05	e : 0.05	f : 0.05	] : 0.05	2 : 0.05	= : 0.03	i : 0.03	3 : 0.03	a : 0.03	
g : 0.16	d : 0.16	c : 0.09	b : 0.09	h : 0.08	4 : 0.08	] : 0.06	f : 0.06	e : 0.05	= : 0.03	2 : 0.03	5 : 0.03	3 : 0.01	
d : 0.21	g : 0.15	c : 0.11	f : 0.09	e : 0.06	h : 0.06	5 : 0.05	4 : 0.05	] : 0.05	2 : 0.05	= : 0.03	b : 0.03	6 : 0.01	

#score	757.7929435768337
#seq	60
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_UTR_m2_run2.txt

#BEAR
a####ddddtttttttttttdddda]==	chr22:39826533-39826863(+)$1	330	237	265	23.7161
f[eeeeebbtttttttttttbb]eeeee	chr12:1895747-1896014(+)$1	267	54	82	22.4460
cccddddwwwwwwwwwwwwwwdddd444	chr8:22277314-22277589(+)$1	275	115	143	22.0808
eeee:ddddtttttttttttdddda[cc	chr20:62565322-62565542(+)$1	220	42	70	21.9045
hhh!!dddduuuuuuuuuuuudddd]hh	chr17:37075441-37075709(+)$1	268	230	258	24.3697
ggg[bbcccuuuuuuuuuuuuccc]bb3	chr17:70643143-70643440(-)$1	297	28	56	24.5814
iii:ddddavvvvvvvvvvvvva]dddd	chr7:65617813-65618107(+)$1	294	251	279	22.7223
eeee"""ccctttttttttttccc4444	chr1:155106755-155106994(+)$1	239	51	79	24.2358
bb[ddddyyyyyyyyyyyyyyyydddd]	chr19:41829096-41829364(+)$1	268	77	105	21.5481
=========wwwwwwwwwwwwww=====	chr1:9160623-9160871(-)$1	248	36	64	24.0445
"""eeeeeyyyyyyyyyyyyyyyyeeee	chr5:175307013-175307343(+)$1	330	136	164	22.0706
b[ggggggguuuuuuuuuuuuggggggg	chrX:70444647-70444889(+)$1	242	208	236	24.9937
ceeeee[ccctttttttttttccc]eee	chr9:134454187-134454456(-)$1	269	82	110	24.0553
:ccc[dddduuuuuuuuuuuudddd]cc	chr17:79801072-79801310(-)$1	238	93	121	23.9291
[hhhhhhhhwwwwwwwwwwwwwwhhhhh	chr19:47991012-47991280(-)$1	268	184	212	21.2508
hhhhhhhhwwwwwwwwwwwwwwhhhhhh	chr16:57418321-57418609(+)$1	288	253	281	21.0552
iiii"""bbyyyyyyyyyyyyyyyybb2	chr2:120195048-120195339(+)$1	291	231	259	21.6337
]bbffffffuuuuuuuuuuuuffffff:	chr3:9848116-9848329(+)$1	213	59	87	21.6524
=========uuuuuuuuuuuu=======	chr17:7215567-7215791(+)$1	224	32	60	25.9877
!!ccc[cccuuuuuuuuuuuuccc]ccc	chr20:36032110-36032364(+)$1	254	22	50	25.6789
=====ddddtttttttttttdddd22==	chr20:45363836-45364078(+)$1	242	153	181	23.9351
[ccc!!cccwwwwwwwwwwwwwwccc22	chr17:18147964-18148245(+)$1	281	129	157	23.2661
eeeeeeeeeuuuuuuuuuuuueeeee::	chr10:102122898-102123105(+)$1	207	53	81	22.0921
ee[a[ddddtttttttttttdddd]a]e	chr15:77338970-77339262(-)$1	292	97	125	23.6710
fddddyyyyyyyyyyyyyyyydddd]ff	chr19:14625579-14625852(-)$1	273	196	224	20.7155
=========wwwwwwwwwwwwww=====	chr11:71708153-71708431(+)$1	278	88	116	24.0445
ee$$$$$ccctttttttttttccc22ee	chr1:155106701-155106955(+)$1	254	105	133	22.8837
eeee[cccvvvvvvvvvvvvvccc]eee	chr11:61633773-61634014(+)$1	241	32	60	24.2752
b[ggggggguuuuuuuuuuuuggggggg	chr6:7883011-7883275(-)$1	264	111	139	24.9937
"""gggggggtttttttttttggggggg	chr22:29950938-29951212(-)$1	274	106	134	23.8156
E:bb[ddddtttttttttttdddd22bb	chr20:62521398-62521661(+)$1	263	202	230	20.3886
ccc[eeeeeuuuuuuuuuuuueeeee]c	chr1:19543817-19544059(-)$1	242	157	185	24.3396
:ccceeeeeuuuuuuuuuuuueeeee]c	chr12:89742021-89742288(-)$1	267	189	217	23.3283
ggga[eeeeettttttttttteeeee22	chr1:160248417-160248747(-)$1	330	267	295	23.2885
!eeeee[bbuuuuuuuuuuuubb22eee	chr2:176042803-176043139(-)$1	336	90	118	23.5840
c####dddduuuuuuuuuuuudddd444	chr13:113537412-113537727(+)$1	315	57	85	24.6928
iiiiiiiiiwwwwwwwwwwwwwwiiiii	chr16:4561445-4561748(-)$1	303	158	186	23.7634
d[ccc[ddddtttttttttttddddccc	chr8:144989477-144989736(-)$1	259	164	192	23.5251
iiiiiiiiitttttttttttiiiiiiii	chr22:42302780-42303041(+)$1	261	79	107	24.0437
ee!!a[cccvvvvvvvvvvvvvccc]a2	chr17:76168227-76168493(+)$1	266	109	137	24.6683
bbccc[ccctttttttttttccc]ccc2	chr5:132203188-132203461(+)$1	273	62	90	23.6825
eeee[eeeeettttttttttteeeeeee	chr1:27661929-27662203(+)$1	274	35	63	23.0727
[ccc[a[ccctttttttttttccc22a]	chr9:34369671-34369952(-)$1	281	87	115	24.5324
eeeee[ccctttttttttttccc]eeee	chr17:72443317-72443640(+)$1	323	143	171	23.8044
gggg"""avvvvvvvvvvvvva333ggg	chr10:75010245-75010503(-)$1	258	169	197	24.6357
ddddfffffftttttttttttffffff]	chr1:160966187-160966427(-)$1	240	153	181	21.8728
!!ggggggguuuuuuuuuuuuggggggg	chr19:1257821-1258118(+)$1	297	90	118	25.2678
iiiiiiiiivvvvvvvvvvvvviiiiii	chrX:38664953-38665211(+)$1	258	159	187	24.9716
c!!bb[bbvvvvvvvvvvvvvbb]bbcc	chr9:137328529-137328791(+)$1	262	82	110	22.3991
iiiiiiiiiuuuuuuuuuuuuiiiiiii	chr14:23080764-23081034(+)$1	270	174	202	25.6200
gggggggwwwwwwwwwwwwwwggggggg	chr1:19198257-19198540(-)$1	283	230	258	22.8692
"""ccc[awwwwwwwwwwwwwwa]ccc4	chr1:55530030-55530304(+)$1	274	112	140	23.0999
dddd"""ccctttttttttttccc333d	chr4:6698669-6698981(+)$1	312	267	295	23.9390
c[bb[ddddwwwwwwwwwwwwwwdddd]	chr1:228286505-228286784(+)$1	279	8	36	22.4553
fffff[cccuuuuuuuuuuuuccc]fff	chr2:219270324-219270560(+)$1	236	19	47	24.5142
hhh[fffffftttttttttttffffff]	chr17:41846314-41846565(-)$1	251	133	161	22.2341

#otherMatches

#Seq PSSM
UGUCAUCUGUUGUAAACGUUCAGGAGGA	chr22:39826533-39826863(+)$1	330	237	265	23.7161
UGAAACAUGCAAGUACCACACACUGUUU	chr12:1895747-1896014(+)$1	267	54	82	22.4460
UCCUCACCUCCUUUUCUCUCAGUGACUC	chr8:22277314-22277589(+)$1	275	115	143	22.0808
UGUAAAACCUAAUAAAUCAUGGUUGUGG	chr20:62565322-62565542(+)$1	220	42	70	21.9045
CCCUCCUGCCCACGCAGACCUGCAGCGG	chr17:37075441-37075709(+)$1	268	230	258	24.3697
UAUCUGCCUCCCAACUCCUCAAGGUCAC	chr17:70643143-70643440(-)$1	297	28	56	24.5814
AGGUGCUUCAUAUUCAGACCAGGUAAGC	chr7:65617813-65618107(+)$1	294	251	279	22.7223
GCCUUUAAGCCAAAGAAACAAGCUGUGC	chr1:155106755-155106994(+)$1	239	51	79	24.2358
GUUAGGUUCCCAUCUCUCCUUCUGCCUC	chr19:41829096-41829364(+)$1	268	77	105	21.5481
GGGCUGUGCUCCUUGGACACUUUGCACA	chr1:9160623-9160871(-)$1	248	36	64	24.0445
AGUUGGCCUCUGCCCCUCUUCCCUGGCC	chr5:175307013-175307343(+)$1	330	136	164	22.0706
CCAGCACUAGUAAAGGAGGAAUAGUGCU	chrX:70444647-70444889(+)$1	242	208	236	24.9937
CGGGGGAGGAUCCUUUCACUUUCCGCUU	chr9:134454187-134454456(-)$1	269	82	110	24.0553
CCACUGGCCUCUCUACAGCACGGCCUGU	chr17:79801072-79801310(-)$1	238	93	121	23.9291
CAGGCUCCUCUUCCCCCAGCCCCGGGAG	chr19:47991012-47991280(-)$1	268	184	212	21.2508
CACCUGGCCUCUGCACUCCCCUGCUGGG	chr16:57418321-57418609(+)$1	288	253	281	21.0552
AAAAAAACAUUUUAAAACUCCUUCUUGA	chr2:120195048-120195339(+)$1	291	231	259	21.6337
UGUAGGAUACUGUAACCuuuuugucuuu	chr3:9848116-9848329(+)$1	213	59	87	21.6524
CUCUCCCCAAACCCCUUUAGAUggggag	chr17:7215567-7215791(+)$1	224	32	60	25.9877
CUCACUGAACUCCUUCCCCACUUCUGUG	chr20:36032110-36032364(+)$1	254	22	50	25.6789
gagagcugguugcuacauuuucaggauu	chr20:45363836-45364078(+)$1	242	153	181	23.9351
GGUUUUUUUCUGUCGUUUUGUUAAAAUU	chr17:18147964-18148245(+)$1	281	129	157	23.2661
AGGGCAGACAAUAGUAUAGAAGUCUGGA	chr10:102122898-102123105(+)$1	207	53	81	22.0921
AGCCUGAGCUUUUUGGUCUUGUUCUGAU	chr15:77338970-77339262(-)$1	292	97	125	23.6710
CCACUGCCAACAUGAGACCAAAGUGUGU	chr19:14625579-14625852(-)$1	273	196	224	20.7155
gcguaugcgugugugugugugugugugu	chr11:71708153-71708431(+)$1	278	88	116	24.0445
GCCUUUAAGCCAAAGAAACAAGCUGUGC	chr1:155106701-155106955(+)$1	254	105	133	22.8837
GAGUCCUCCACCCCAUCACUAGAGUGCU	chr11:61633773-61634014(+)$1	241	32	60	24.2752
UGGUCACUGUGUAAACAUUUUCAGUGGC	chr6:7883011-7883275(-)$1	264	111	139	24.9937
AAAUGUGUAGUUCCAGUCCUUCUAUGCA	chr22:29950938-29951212(-)$1	274	106	134	23.8156
CCCUUUGGGAAUCAUGUUAGCCCAUCAG	chr20:62521398-62521661(+)$1	263	202	230	20.3886
cucagcuaauuuuuuguauuuuuaguag	chr1:19543817-19544059(-)$1	242	157	185	24.3396
UUACCUCUGUAUAAAAUUCUUCAGGGAG	chr12:89742021-89742288(-)$1	267	189	217	23.3283
UGGCAGACACAAAUAAACCCAGUGUCAG	chr1:160248417-160248747(-)$1	330	267	295	23.2885
GAUGGUUGCUUUCUUGAUUUUGUUUGCC	chr2:176042803-176043139(-)$1	336	90	118	23.5840
UCCCCACAUACCCUCGUCCCCAUGUCCC	chr13:113537412-113537727(+)$1	315	57	85	24.6928
UGUGCCUGCUCACACCUGCUCCUGCAGG	chr16:4561445-4561748(-)$1	303	158	186	23.7634
CAUGGAGCCCCAGCCCCCUUUGGGCCCA	chr8:144989477-144989736(-)$1	259	164	192	23.5251
CCUAGGAGAAAAAGUCCUACUUUUCUGG	chr22:42302780-42303041(+)$1	261	79	107	24.0437
ACAAGUGCCUCAGCUUCCCCCCGGCCCG	chr17:76168227-76168493(+)$1	266	109	137	24.6683
GCUGCCUAUGAAAAUGACAAAUGAGCAA	chr5:132203188-132203461(+)$1	273	62	90	23.6825
UCGGUGGCCCCACACCCACCAGGGUCCC	chr1:27661929-27662203(+)$1	274	35	63	23.0727
CUCUCGUAGGAAAUAAAUAGCCCUUUCA	chr9:34369671-34369952(-)$1	281	87	115	24.5324
UCUCUGGAGAUUCCUGCAACCUCAAGAG	chr17:72443317-72443640(+)$1	323	143	171	23.8044
UGGACAACUUUACAAUUUACUGGCUUCC	chr10:75010245-75010503(-)$1	258	169	197	24.6357
AGGAUGAGAUUUUUAAAGUAUGUUUCAG	chr1:160966187-160966427(-)$1	240	153	181	21.8728
AUUUUCCUUCAUUUCUUUAACAAGGAGA	chr19:1257821-1258118(+)$1	297	90	118	25.2678
CUGGGUUGCCACACUUGGGAAAGCAGCC	chrX:38664953-38665211(+)$1	258	159	187	24.9716
GUUGUCACCCUCCUUAUUUCUGUUACUA	chr9:137328529-137328791(+)$1	262	82	110	22.3991
AUGGGGAGCCUCCAGCCACAAGUUCCCU	chr14:23080764-23081034(+)$1	270	174	202	25.6200
AUCUGUGACCACGAUUCCUCCCACAGAU	chr1:19198257-19198540(-)$1	283	230	258	22.8692
ccggcugggcuccucAUUUUUACGGGUA	chr1:55530030-55530304(+)$1	274	112	140	23.0999
AGUGUCCUCUCCCCACAAAACAGAAUUC	chr4:6698669-6698981(+)$1	312	267	295	23.9390
ACUCGUGCUCGCUCAGACACUUUGGCAG	chr1:228286505-228286784(+)$1	279	8	36	22.4553
CCCCCUGCCUGAUCCCCUGCUGGCUGGG	chr2:219270324-219270560(+)$1	236	19	47	24.5142
GGUGUCCGUCAGUUAUUAGUGGAUGGAG	chr17:41846314-41846565(-)$1	251	133	161	22.2341

#DB
(....((((...........))))).))	chr22:39826533-39826863(+)$1	1	237	265	23.7161
(.(((((((...........)).)))))	chr12:1895747-1896014(+)$1	1	54	82	22.4460
(((((((..............))))...	chr8:22277314-22277589(+)$1	1	115	143	22.0808
)))).((((...........))))(.((	chr20:62565322-62565542(+)$1	1	42	70	21.9045
(((..((((............)))).))	chr17:37075441-37075709(+)$1	1	230	258	24.3697
(((.(((((............))).)).	chr17:70643143-70643440(-)$1	1	28	56	24.5814
))).(((((.............).))))	chr7:65617813-65618107(+)$1	1	251	279	22.7223
((((...(((...........)))....	chr1:155106755-155106994(+)$1	1	51	79	24.2358
((.((((................)))).	chr19:41829096-41829364(+)$1	1	77	105	21.5481
(((((((((..............)))))	chr1:9160623-9160871(-)$1	1	36	64	24.0445
...(((((................))))	chr5:175307013-175307343(+)$1	1	136	164	22.0706
(.(((((((............)))))))	chrX:70444647-70444889(+)$1	1	208	236	24.9937
)(((((.(((...........))).)))	chr9:134454187-134454456(-)$1	1	82	110	24.0553
.(((.((((............)))).))	chr17:79801072-79801310(-)$1	1	93	121	23.9291
.((((((((..............)))))	chr19:47991012-47991280(-)$1	1	184	212	21.2508
((((((((..............))))))	chr16:57418321-57418609(+)$1	1	253	281	21.0552
((((...((................)).	chr2:120195048-120195339(+)$1	1	231	259	21.6337
.))((((((............)))))).	chr3:9848116-9848329(+)$1	1	59	87	21.6524
(((((((((............)))))))	chr17:7215567-7215791(+)$1	1	32	60	25.9877
..(((.(((............))).)))	chr20:36032110-36032364(+)$1	1	22	50	25.6789
(((((((((...........))))..))	chr20:45363836-45364078(+)$1	1	153	181	23.9351
.(((..(((..............)))..	chr17:18147964-18148245(+)$1	1	129	157	23.2661
))))(((((............)))))..	chr10:102122898-102123105(+)$1	1	53	81	22.0921
((.(.((((...........)))).).)	chr15:77338970-77339262(-)$1	1	97	125	23.6710
(((((................)))).))	chr19:14625579-14625852(-)$1	1	196	224	20.7155
(((((((((..............)))))	chr11:71708153-71708431(+)$1	1	88	116	24.0445
((.....(((...........)))..))	chr1:155106701-155106955(+)$1	1	105	133	22.8837
((((.(((.............))).)))	chr11:61633773-61634014(+)$1	1	32	60	24.2752
(.(((((((............)))))))	chr6:7883011-7883275(-)$1	1	111	139	24.9937
...(((((((...........)))))))	chr22:29950938-29951212(-)$1	1	106	134	23.8156
).((.((((...........))))..))	chr20:62521398-62521661(+)$1	1	202	230	20.3886
(((.(((((............))))).)	chr1:19543817-19544059(-)$1	1	157	185	24.3396
.((((((((............))))).)	chr12:89742021-89742288(-)$1	1	189	217	23.3283
((((.(((((...........)))))..	chr1:160248417-160248747(-)$1	1	267	295	23.2885
.(((((.((............))..)))	chr2:176042803-176043139(-)$1	1	90	118	23.5840
(....((((............))))...	chr13:113537412-113537727(+)$1	1	57	85	24.6928
(((((((((..............)))))	chr16:4561445-4561748(-)$1	1	158	186	23.7634
(.(((.((((...........)))))))	chr8:144989477-144989736(-)$1	1	164	192	23.5251
(((((((((...........))))))))	chr22:42302780-42303041(+)$1	1	79	107	24.0437
((..(.(((.............))).).	chr17:76168227-76168493(+)$1	1	109	137	24.6683
(((((.(((...........))).))).	chr5:132203188-132203461(+)$1	1	62	90	23.6825
((((.(((((...........)))))))	chr1:27661929-27662203(+)$1	1	35	63	23.0727
.(((.(.(((...........)))..).	chr9:34369671-34369952(-)$1	1	87	115	24.5324
(((((.(((...........))).))))	chr17:72443317-72443640(+)$1	1	143	171	23.8044
((((...(.............)...)))	chr10:75010245-75010503(-)$1	1	169	197	24.6357
((((((((((...........)))))).	chr1:160966187-160966427(-)$1	1	153	181	21.8728
..(((((((............)))))))	chr19:1257821-1258118(+)$1	1	90	118	25.2678
(((((((((.............))))))	chrX:38664953-38665211(+)$1	1	159	187	24.9716
(..((.((.............)).))))	chr9:137328529-137328791(+)$1	1	82	110	22.3991
(((((((((............)))))))	chr14:23080764-23081034(+)$1	1	174	202	25.6200
(((((((..............)))))))	chr1:19198257-19198540(-)$1	1	230	258	22.8692
...(((.(..............).))).	chr1:55530030-55530304(+)$1	1	112	140	23.0999
((((...(((...........)))...)	chr4:6698669-6698981(+)$1	1	267	295	23.9390
(.((.((((..............)))).	chr1:228286505-228286784(+)$1	1	8	36	22.4553
(((((.(((............))).)))	chr2:219270324-219270560(+)$1	1	19	47	24.5142
(((.((((((...........)))))).	chr17:41846314-41846565(-)$1	1	133	161	22.2341

#PSSM
e : 0.16	c : 0.10	i : 0.10	g : 0.07	b : 0.07	= : 0.07	f : 0.05	h : 0.05	" : 0.05	[ : 0.05	! : 0.05	d : 0.05	: : 0.03	a : 0.01	] : 0.01	E : 0.01	
e : 0.19	c : 0.10	i : 0.10	[ : 0.08	h : 0.07	g : 0.07	= : 0.07	b : 0.05	" : 0.05	! : 0.05	d : 0.05	# : 0.03	: : 0.01	f : 0.01	
e : 0.16	c : 0.16	g : 0.12	i : 0.10	h : 0.07	= : 0.07	" : 0.05	b : 0.05	d : 0.05	# : 0.03	[ : 0.03	! : 0.03	$ : 0.01	f : 0.01	
e : 0.17	c : 0.14	g : 0.10	d : 0.08	i : 0.08	= : 0.07	[ : 0.05	b : 0.05	# : 0.03	! : 0.03	h : 0.03	f : 0.03	a : 0.03	: : 0.01	$ : 0.01	
e : 0.14	[ : 0.14	g : 0.08	d : 0.07	" : 0.07	= : 0.07	f : 0.07	c : 0.07	i : 0.07	# : 0.03	! : 0.03	b : 0.03	h : 0.03	: : 0.01	$ : 0.01	a : 0.01	
d : 0.21	e : 0.16	[ : 0.12	g : 0.08	" : 0.07	i : 0.07	= : 0.05	f : 0.05	h : 0.03	c : 0.03	b : 0.01	! : 0.01	y : 0.01	$ : 0.01	a : 0.01	
d : 0.23	c : 0.14	e : 0.12	g : 0.08	" : 0.07	[ : 0.07	i : 0.07	= : 0.05	f : 0.05	h : 0.03	y : 0.01	$ : 0.01	b : 0.01	
c : 0.23	d : 0.19	e : 0.10	b : 0.07	g : 0.07	i : 0.07	= : 0.05	f : 0.05	w : 0.03	y : 0.03	h : 0.03	a : 0.03	
c : 0.21	d : 0.17	e : 0.08	w : 0.07	g : 0.07	i : 0.07	b : 0.05	y : 0.05	= : 0.05	f : 0.05	v : 0.05	a : 0.01	h : 0.01	
u : 0.28	w : 0.17	t : 0.16	v : 0.10	c : 0.08	y : 0.07	e : 0.03	f : 0.03	g : 0.01	d : 0.01	
t : 0.35	u : 0.28	w : 0.17	v : 0.10	y : 0.07	
t : 0.35	u : 0.28	w : 0.17	v : 0.10	y : 0.07	
t : 0.35	u : 0.28	w : 0.17	v : 0.10	y : 0.07	
t : 0.35	u : 0.28	w : 0.17	v : 0.10	y : 0.07	
t : 0.35	u : 0.28	w : 0.17	v : 0.10	y : 0.07	
t : 0.35	u : 0.28	w : 0.17	v : 0.10	y : 0.07	
t : 0.35	u : 0.28	w : 0.17	v : 0.10	y : 0.07	
t : 0.35	u : 0.28	w : 0.17	v : 0.10	y : 0.07	
t : 0.35	u : 0.28	w : 0.17	v : 0.10	y : 0.07	
t : 0.35	u : 0.28	w : 0.17	v : 0.10	y : 0.07	
u : 0.28	t : 0.19	w : 0.17	v : 0.10	d : 0.08	y : 0.07	c : 0.03	b : 0.01	i : 0.01	
d : 0.19	c : 0.19	w : 0.14	g : 0.08	e : 0.08	b : 0.05	v : 0.05	y : 0.05	f : 0.05	i : 0.03	= : 0.01	a : 0.01	
c : 0.21	d : 0.19	w : 0.10	g : 0.08	e : 0.08	y : 0.05	f : 0.05	i : 0.05	a : 0.03	b : 0.03	] : 0.01	h : 0.01	= : 0.01	3 : 0.01	
d : 0.23	c : 0.19	e : 0.10	] : 0.08	g : 0.08	i : 0.07	= : 0.05	f : 0.05	y : 0.03	h : 0.03	2 : 0.01	3 : 0.01	
d : 0.16	e : 0.14	] : 0.10	g : 0.08	2 : 0.08	c : 0.07	i : 0.07	= : 0.05	f : 0.05	a : 0.03	h : 0.03	3 : 0.03	4 : 0.01	y : 0.01	b : 0.01	
e : 0.19	g : 0.10	] : 0.08	c : 0.08	f : 0.07	2 : 0.07	i : 0.07	4 : 0.05	b : 0.05	d : 0.05	= : 0.05	h : 0.03	[ : 0.01	a : 0.01	3 : 0.01	
e : 0.14	c : 0.12	g : 0.10	= : 0.08	f : 0.08	i : 0.07	4 : 0.05	h : 0.05	b : 0.05	d : 0.05	] : 0.05	2 : 0.03	a : 0.03	: : 0.01	3 : 0.01	
e : 0.16	c : 0.12	g : 0.10	= : 0.08	] : 0.08	2 : 0.08	4 : 0.07	i : 0.07	h : 0.05	d : 0.03	: : 0.03	f : 0.03	3 : 0.01	b : 0.01	

#score	1312.2448693919478
#seq	56
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_transcript_m1_run1.txt

#BEAR
===========[ccc[a[ammmma]a]ccc==========	chr5:167987911-167988163(-)$1	252	203	243	18.7444
[ccc[gggggggddddnnnnndddd4444gggggggccc]	chr17:75418581-75418820(+)$1	239	44	84	15.3224
ccc"""ccc####cccooooooccc4444ccc333ccc:e	chr3:38011197-38011478(+)$1	281	44	84	17.6583
===========[a!!ddddllldddd333a]=========	chr2:101767639-101767902(-)$1	263	118	158	20.9968
d"""ccc[ccc!!cccooooooccc333ccc]ccc]dddd	chr11:57407590-57407837(+)$1	247	144	184	18.0174
iiiiiiiii[ffffffnnnnnffffff4444iiiiiiiii	chr1:1239727-1240014(-)$1	287	112	152	14.7871
==========="""cccdddd[dddd[bb[==========	chr5:149112306-149112561(+)$1	255	58	98	16.5288
da[ggggggg!!ddddooooooddddggggggg]a]dddd	chr2:75186580-75186871(+)$1	291	88	128	16.6372
####iiiiiiiii[ddddmmmmdddd]iiiiiiiii333f	chr17:57918275-57918483(+)$1	208	141	181	17.8790
==========####ccclllccc==========22a]===	chr22:42296854-42297074(+)$1	220	111	151	19.2051
d"""eeeee"""ddddoooooodddd]eeeee333ddddb	chr9:97848077-97848304(+)$1	227	125	165	15.0792
:==========[a!!cccmmmmccc22a]==========:	chr22:20020505-20020776(+)$1	271	113	153	18.4182
a[=========="""cccmmmmccc]==========aCCC	chr22:20074299-20074546(+)$1	247	73	113	16.2725
i[ccc!!ccc[a[cccooooooccc]a]cccccc]iiiii	chr5:154136429-154136686(+)$1	257	192	232	18.3885
===ggggggg!!ddddoooooodddd333ggggggg4444	chr8:144675270-144675543(-)$1	273	33	73	19.5226
===========[ddddoooooodddd333===========	chr5:175055177-175055393(+)$1	216	21	61	22.9100
===$$$$$ccc"""ddddmmmmdddd]ccc==========	chr9:96938099-96938345(+)$1	246	163	203	17.7602
[ccc[===========oooooo===========ccc]===	chr13:92003484-92003688(+)$1	204	103	143	20.1938
[gggggggccc!!a[cccmmmmccc]a22ccc22gggggg	chr17:74380188-74380434(+)$1	246	51	91	16.0878
=====[bb[bb[bbrrrrrrrrrbb]bb]bb]========	chr16:14397840-14398086(+)$1	246	6	46	13.5860
==========]===========]ccc4444iiiiiiiiib	chr16:2321360-2321625(+)$1	265	79	119	17.6210
===$$$$$ccc"""ddddmmmmdddd]ccc==========	chr9:96938169-96938377(+)$1	208	93	133	17.7602
dd[=============mmmm=============]dddd]a	chr2:196522411-196522688(+)$1	277	35	75	16.3328
gggggg[bb[ccc!!ddddllldddd22cccbbggggggg	chr11:57407029-57407292(+)$1	263	22	62	15.1176
!ffffff[ccc[ddddoooooodddd]cccffffffdddd	chr3:49055820-49056130(-)$1	310	123	163	14.7540
####iiiiiiiiicccooooooccc22iiiiiiiii4444	chr2:97532472-97532723(-)$1	251	64	104	20.3064
fffff[==========oooooo==========]ffffff:	chr9:96928878-96929122(+)$1	244	121	161	16.6456
========ccc####ccclllcccccc]============	chr1:205417498-205417723(-)$1	225	131	171	20.3540
bb[===========[bbmmmmbb===========]bbddd	chr9:96929265-96929533(+)$1	268	44	84	15.4158
:==========[ccc[ccclllccc22ccc]=========	chr12:58218187-58218440(-)$1	253	30	70	18.9325
Fiiiiiiiii"""ddddnnnnndddd333iiiiiiiii::	chr1:245026466-245026716(-)$1	250	169	209	17.0321
====[ccc[a!!bb!!ammmma22bba]ccc=========	chr9:101558572-101558850(-)$1	278	118	158	16.2023
==========ccccccrrrrrrrrrccc]ccc4444====	chr16:14403082-14403317(+)$1	235	81	121	16.2540
="""==========cccooooooccc22==========22	chr1:205417407-205417652(-)$1	245	150	190	21.3410
iiiiiiii!!a[cccddddllldddd22ccca22iiiiii	chr17:80188013-80188292(+)$1	279	157	197	17.6010
gggggg===========lll===========bb[ccc[ee	chr2:47402805-47403084(-)$1	279	69	109	16.3025
fff"""ccc[ccccccooooooccc22ccc]cccffffff	chr1:3477172-3477410(-)$1	238	12	52	16.0310
fffff!!ccc!!ddddoooooodddd22ccc]ffffff22	chr22:22006985-22007240(+)$1	255	192	232	15.6887
=========bb!!cccooooooccc22bb]==========	chr1:1241161-1241422(-)$1	261	214	254	21.1877
c!!a[a[============lll============22a]a2	chr7:5569876-5570148(-)$1	272	203	243	17.7515
!ccc[a[eeeee[cccooooooccc]eeeeeaccc333dd	chr1:46768321-46768601(-)$1	280	5	45	14.7821
####iiiiiiiii!!cccnnnnnccc333iiiiiiiiia2	chr7:1063324-1063586(-)$1	262	23	63	18.4041
========ccc####ccclllcccccc]============	chr1:205417523-205417767(-)$1	244	175	215	20.3540
iiiiiiiii####ddddnnnnnddddiiiiiiiiiggggg	chr1:1242460-1242680(-)$1	220	78	118	18.0986
c[ggggggg[bbddddoooooodddd]bb]ggggggg]cc	chr17:79972868-79973103(+)$1	235	193	233	16.7040
!ggggggg[ccc"""cccmmmmccc4444ccc22gggggg	chr20:3898831-3899049(+)$1	218	66	106	16.6261
iiiiiiiii[bbacccooooooccc]a]bb]iiiiiiiii	chr22:42297841-42298067(+)$1	226	160	200	19.4582

#otherMatches

#Seq PSSM
UACAGUGCUGCCUUGUUGCAUAUGGAUCAAGCAGCAUUGU	chr5:167987911-167988163(-)$1	252	203	243	18.7444
GGGGUGGGUGGUCAGGCGGAUCCUGGAAAACCAUCCUCUG	chr17:75418581-75418820(+)$1	239	44	84	15.3224
GUGCUACGACAUCCUGUUCCUCCAGCCCCUCGCUCCACCC	chr3:38011197-38011478(+)$1	281	44	84	17.6583
CUCGGCUCACAGCGACCGGCGGCCGGGGAGAUGUGAGCUg	chr2:101767639-101767902(-)$1	263	118	158	20.9968
CUGUGGCCCUAGCUGGAAUGUGCCACAAUAGAGCCUGCCU	chr11:57407590-57407837(+)$1	247	144	184	18.0174
CAGGGUUGAGGGGCUCCAGAUGGGUCCAGGGUUGACUCUG	chr1:1239727-1240014(-)$1	287	112	152	14.7871
gccagagggugacagagccacccagggcuccugacuccag	chr5:149112306-149112561(+)$1	255	58	98	16.5288
GAUGGUUUCUGUUGGCCACAGUGCCAGGAAGCCCUACCUG	chr2:75186580-75186871(+)$1	291	88	128	16.6372
GCUUGGGAGGAAAAUAAACAAUUUUACUUUUUUCCUUUAG	chr17:57918275-57918483(+)$1	208	141	181	17.8790
GCAUUGCAUGUUCUGGUGGUACCCAUGCAAUGUUUCCACA	chr22:42296854-42297074(+)$1	220	111	151	19.2051
UAUUUGCAGUCCAGGCCUUCGCGUCUCCUGCGCCAGCAGA	chr9:97848077-97848304(+)$1	227	125	165	15.0792
AGAGCUGGGUUGGGGGCCGGUGGGCAGUGGGCCUGGCUCG	chr22:20020505-20020776(+)$1	271	113	153	18.4182
GUCCAGAUUUUUAAAGUUUCCUAAUGAAAAGUUUGGCCCA	chr22:20074299-20074546(+)$1	247	73	113	16.2725
ggcgcuggggguggcaggagggugcgggcccgcggcgcgg	chr5:154136429-154136686(+)$1	257	192	232	18.3885
GACACCUAGUGUCUCCAGCCGAGGAGUGAACUGGGUGGAG	chr8:144675270-144675543(-)$1	273	33	73	19.5226
ggcgaucugguugugacaucuaucaccccacuggauugcc	chr5:175055177-175055393(+)$1	216	21	61	22.9100
GUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAA	chr9:96938099-96938345(+)$1	246	163	203	17.7602
CGGUUGCAAUGCUGUGUUUCUGUAUGGUAUUGCACUUGUC	chr13:92003484-92003688(+)$1	204	103	143	20.1938
CCGGCGCCGACAGCACCCGCGGGGGCGAGGUCGUGGCGUC	chr17:74380188-74380434(+)$1	246	51	91	16.0878
AGGGCGAGAUGAGUUUAUGUUUUAUCCAACUGGCCCUCAA	chr16:14397840-14398086(+)$1	246	6	46	13.5860
GCCUGGGGCCUCUCCAGUGGGCAUGUCUGAACUCUCCCAG	chr16:2321360-2321625(+)$1	265	79	119	17.6210
GUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACAA	chr9:96938169-96938377(+)$1	208	93	133	17.7602
AGGCUUUGGGGAUCUGUAGGCAGGUCUUCGGGGGCUUGGC	chr2:196522411-196522688(+)$1	277	35	75	16.3328
GGGGAGAGGAGAGAACUUGAGCCGGGGCCUCCCCUCCCCC	chr11:57407029-57407292(+)$1	263	22	62	15.1176
UCCGGUCACCAUGGCGACCAGGCGCCUUGGGGUCGGGGAG	chr3:49055820-49056130(-)$1	310	123	163	14.7540
GCAUCUCUGGCAGCCUGGAUUGGGGUCCUGCUGGAGUGAA	chr2:97532472-97532723(-)$1	251	64	104	20.3064
CUUCCCCCCGCUUCAAUCAAACUUGGGGCGGGCGGAAGGC	chr9:96928878-96929122(+)$1	244	121	161	16.6456
GAGUGAGGGCUUCUCGGGUGCCCCAGCUUCUCGCUUCCCU	chr1:205417498-205417723(-)$1	225	131	171	20.3540
GCAGCUGCUGCGGCUGGAGGUCCGCUGCGGCAGCCGUCCU	chr9:96929265-96929533(+)$1	268	44	84	15.4158
CUUGUUUCUGGAGGCAGCUGAUGGUCCGCCGCCGGAAACA	chr12:58218187-58218440(-)$1	253	30	70	18.9325
UGUCUCGGGGGGAGGGGAGAGGCCCCAGGUCCCGGGGCGG	chr1:245026466-245026716(-)$1	250	169	209	17.0321
GCGCGCGUGUGACCAGGGCGACAcggagacggcgcggcgg	chr9:101558572-101558850(-)$1	278	118	158	16.2023
UUUGGGGGCAGAUGUGUUUCCAUUCCACUAUCAUAAUGCC	chr16:14403082-14403317(+)$1	235	81	121	16.2540
UCAUUCCUAUGUGAUUGCUGUCCCAAACUCAUGUAGGGCU	chr1:205417407-205417652(-)$1	245	150	190	21.3410
GGGCUCUGCCGUGGCACGUGCAGCGUCUGUCCCCCAGGGC	chr17:80188013-80188292(+)$1	279	157	197	17.6010
cggcgcgcugugugggccgagcccgcgcggcgcagggagc	chr2:47402805-47403084(-)$1	279	69	109	16.3025
GCCGACGCCUGAGGCUGUUCCUGGCUGCUCCGGUGGCUGC	chr1:3477172-3477410(-)$1	238	12	52	16.0310
GAUGGACUGGACGGGGGCUCUGCCCCACCCACCCAUCCAU	chr22:22006985-22007240(+)$1	255	192	232	15.6887
GAGGCCAGGGGAGCCCGUGUAGGGGAACCGCCUGGCCUCU	chr1:1241161-1241422(-)$1	261	214	254	21.1877
GGAGGCGCGCUCCGGGGGUGCCGCUCUCGGGGCGGGGGCA	chr7:5569876-5570148(-)$1	272	203	243	17.7515
ACCCGCACCGCGGCCUGGCUCGGGGGCGCGGGGGGCGAGG	chr1:46768321-46768601(-)$1	280	5	45	14.7821
ucgaggcugcaguaaacugugauggugccgcugcagucca	chr7:1063324-1063586(-)$1	262	23	63	18.4041
GAGUGAGGGCUUCUCGGGUGCCCCAGCUUCUCGCUUCCCU	chr1:205417523-205417767(-)$1	244	175	215	20.3540
GUCUGCAUGUUUUCCAUCAUUCGUGGCGUGCAGGCGUGUA	chr1:1242460-1242680(-)$1	220	78	118	18.0986
GACUCUGGGAGGCUUCUUUUUUGGGGUCCAUCCAGAGGCC	chr17:79972868-79973103(+)$1	235	193	233	16.7040
UAAAAUUUUACUUUUGUUUGAUGACUAGUGGUUUGAAUUU	chr20:3898831-3899049(+)$1	218	66	106	16.6261
GUUUUGAGGAGAGGGAUCCUUUUCCACAUCCCCUUGAAGC	chr22:42297841-42298067(+)$1	226	160	200	19.4582

#DB
(((((((((((.(((.(.(....).).)))))))))))))	chr5:167987911-167988163(-)$1	1	203	243	18.7444
.(((.(((((((((((.....))))....)))))))))).	chr17:75418581-75418820(+)$1	1	44	84	15.3224
(((...(((....(((......)))....)))...))).(	chr3:38011197-38011478(+)$1	1	44	84	17.6583
(((((((((((.(..((((...))))...).)))))))))	chr2:101767639-101767902(-)$1	1	118	158	20.9968
(...(((.(((..(((......)))...))).))).))))	chr11:57407590-57407837(+)$1	1	144	184	18.0174
(((((((((.((((((.....))))))....)))))))))	chr1:1239727-1240014(-)$1	1	112	152	14.7871
(((((((((((...(((((((.((((.((.((((((((((	chr5:149112306-149112561(+)$1	1	58	98	16.5288
((.(((((((..((((......))))))))))).).))))	chr2:75186580-75186871(+)$1	1	88	128	16.6372
....(((((((((.((((....)))).)))))))))...)	chr17:57918275-57918483(+)$1	1	141	181	17.8790
((((((((((....(((...)))))))))))))..).)))	chr22:42296854-42297074(+)$1	1	111	151	19.2051
(...(((((...((((......)))).)))))...)))))	chr9:97848077-97848304(+)$1	1	125	165	15.0792
.((((((((((.(..(((....)))..).)))))))))).	chr22:20020505-20020776(+)$1	1	113	153	18.4182
(.((((((((((...(((....))).)))))))))))(((	chr22:20074299-20074546(+)$1	1	73	113	16.2725
(.(((..(((.(.(((......))).).)))))).)))))	chr5:154136429-154136686(+)$1	1	192	232	18.3885
((((((((((..((((......))))...)))))))....	chr8:144675270-144675543(-)$1	1	33	73	19.5226
(((((((((((.((((......))))...)))))))))))	chr5:175055177-175055393(+)$1	1	21	61	22.9100
(((.....(((...((((....)))).)))))))))))))	chr9:96938099-96938345(+)$1	1	163	203	17.7602
.(((.(((((((((((......)))))))))))))).)))	chr13:92003484-92003688(+)$1	1	103	143	20.1938
.((((((((((..(.(((....))).)..)))..))))))	chr17:74380188-74380434(+)$1	1	51	91	16.0878
(((((.((.((.((.........)).)).)).))))))))	chr16:14397840-14398086(+)$1	1	6	46	13.5860
)))))))))).))))))))))).)))....)))))))))(	chr16:2321360-2321625(+)$1	1	79	119	17.6210
(((.....(((...((((....)))).)))))))))))))	chr9:96938169-96938377(+)$1	1	93	133	17.7602
((.(((((((((((((....))))))))))))).)))).)	chr2:196522411-196522688(+)$1	1	35	75	16.3328
((((((.((.(((..((((...))))..))))))))))))	chr11:57407029-57407292(+)$1	1	22	62	15.1176
.((((((.(((.((((......)))).)))))))))))))	chr3:49055820-49056130(-)$1	1	123	163	14.7540
....((((((((((((......)))..)))))))))....	chr2:97532472-97532723(-)$1	1	64	104	20.3064
(((((.((((((((((......)))))))))).)))))).	chr9:96928878-96929122(+)$1	1	121	161	16.6456
(((((((((((....(((...)))))).))))))))))))	chr1:205417498-205417723(-)$1	1	131	171	20.3540
((.(((((((((((.((....))))))))))))).))(((	chr9:96929265-96929533(+)$1	1	44	84	15.4158
.((((((((((.(((.(((...)))..))).)))))))))	chr12:58218187-58218440(-)$1	1	30	70	18.9325
)(((((((((...((((.....))))...)))))))))..	chr1:245026466-245026716(-)$1	1	169	209	17.0321
((((.(((.(..((..(....)..))).))))))))))))	chr9:101558572-101558850(-)$1	1	118	158	16.2023
((((((((((((((((.........))).)))....))))	chr16:14403082-14403317(+)$1	1	81	121	16.2540
(...(((((((((((((......)))..))))))))))..	chr1:205417407-205417652(-)$1	1	150	190	21.3410
((((((((..(.(((((((...))))..))))..))))))	chr17:80188013-80188292(+)$1	1	157	197	17.6010
))))))(((((((((((...)))))))))))((.(((.((	chr2:47402805-47403084(-)$1	1	69	109	16.3025
(((...(((.((((((......)))..))).)))))))))	chr1:3477172-3477410(-)$1	1	12	52	16.0310
(((((..(((..((((......))))..))).))))))..	chr22:22006985-22007240(+)$1	1	192	232	15.6887
(((((((((((..(((......)))..)).))))))))))	chr1:1241161-1241422(-)$1	1	214	254	21.1877
(..(.(.((((((((((((...))))))))))))..).).	chr7:5569876-5570148(-)$1	1	203	243	17.7515
.(((.(.(((((.(((......))).)))))))))...))	chr1:46768321-46768601(-)$1	1	5	45	14.7821
....(((((((((..(((.....)))...)))))))))).	chr7:1063324-1063586(-)$1	1	23	63	18.4041
(((((((((((....(((...)))))).))))))))))))	chr1:205417523-205417767(-)$1	1	175	215	20.3540
(((((((((....((((.....))))))))))))))))))	chr1:1242460-1242680(-)$1	1	78	118	18.0986
(.(((((((.((((((......)))).)).))))))).))	chr17:79972868-79973103(+)$1	1	193	233	16.7040
.(((((((.(((...(((....)))....)))..))))))	chr20:3898831-3899049(+)$1	1	66	106	16.6261
(((((((((.((((((......))).).)).)))))))))	chr22:42297841-42298067(+)$1	1	160	200	19.4582

#PSSM
= : 0.34	i : 0.10	d : 0.08	[ : 0.06	c : 0.06	# : 0.06	! : 0.06	f : 0.06	: : 0.04	g : 0.04	a : 0.02	b : 0.02	F : 0.02	
= : 0.36	i : 0.10	c : 0.08	g : 0.08	f : 0.08	" : 0.06	# : 0.06	[ : 0.06	a : 0.02	d : 0.02	b : 0.02	! : 0.02	
= : 0.38	c : 0.10	i : 0.10	g : 0.10	f : 0.08	" : 0.06	[ : 0.06	# : 0.06	! : 0.02	
= : 0.36	g : 0.14	" : 0.10	i : 0.10	c : 0.08	# : 0.06	f : 0.06	$ : 0.04	a : 0.02	
= : 0.36	i : 0.17	g : 0.14	[ : 0.10	f : 0.06	" : 0.04	c : 0.04	$ : 0.04	e : 0.02	
= : 0.36	g : 0.17	i : 0.17	" : 0.04	c : 0.04	! : 0.04	$ : 0.04	[ : 0.04	a : 0.04	e : 0.02	f : 0.02	
= : 0.40	i : 0.17	g : 0.12	c : 0.08	[ : 0.06	! : 0.04	$ : 0.04	e : 0.02	b : 0.02	f : 0.02	
= : 0.42	i : 0.17	g : 0.12	c : 0.10	[ : 0.04	e : 0.04	$ : 0.04	b : 0.04	
= : 0.38	c : 0.23	i : 0.14	g : 0.08	[ : 0.06	e : 0.04	b : 0.02	! : 0.02	
= : 0.36	c : 0.21	[ : 0.10	i : 0.08	g : 0.06	# : 0.04	b : 0.04	" : 0.02	a : 0.02	! : 0.02	e : 0.02	
= : 0.29	c : 0.23	! : 0.08	b : 0.08	# : 0.06	i : 0.06	" : 0.04	g : 0.02	f : 0.02	[ : 0.02	] : 0.02	a : 0.02	e : 0.02	
= : 0.19	[ : 0.17	! : 0.14	# : 0.10	" : 0.10	c : 0.08	i : 0.06	b : 0.04	g : 0.02	f : 0.02	a : 0.02	e : 0.02	
d : 0.17	= : 0.17	c : 0.12	" : 0.12	# : 0.10	a : 0.06	! : 0.06	i : 0.06	[ : 0.04	b : 0.04	f : 0.02	
c : 0.25	d : 0.21	= : 0.17	" : 0.10	! : 0.08	# : 0.06	b : 0.04	f : 0.02	[ : 0.02	a : 0.02	
c : 0.31	d : 0.27	= : 0.12	! : 0.10	" : 0.04	[ : 0.04	# : 0.04	f : 0.02	r : 0.02	
c : 0.40	d : 0.34	= : 0.12	[ : 0.04	f : 0.02	r : 0.02	b : 0.02	! : 0.02	
o : 0.36	c : 0.23	d : 0.17	= : 0.06	a : 0.04	n : 0.04	r : 0.04	m : 0.02	b : 0.02	
o : 0.38	c : 0.17	d : 0.14	n : 0.08	m : 0.06	l : 0.04	r : 0.04	= : 0.04	[ : 0.02	
o : 0.38	m : 0.21	n : 0.10	d : 0.08	l : 0.08	r : 0.04	= : 0.04	a : 0.02	c : 0.02	
o : 0.38	m : 0.23	l : 0.19	n : 0.10	r : 0.04	d : 0.02	= : 0.02	
o : 0.38	m : 0.21	l : 0.14	n : 0.10	= : 0.06	r : 0.04	d : 0.02	c : 0.02	
o : 0.38	m : 0.17	l : 0.10	c : 0.06	= : 0.06	n : 0.06	r : 0.04	d : 0.02	f : 0.02	[ : 0.02	b : 0.02	a : 0.02	
d : 0.36	c : 0.34	= : 0.10	r : 0.04	m : 0.02	f : 0.02	] : 0.02	b : 0.02	2 : 0.02	o : 0.02	n : 0.02	
c : 0.38	d : 0.36	= : 0.14	a : 0.02	f : 0.02	b : 0.02	2 : 0.02	r : 0.02	
c : 0.38	d : 0.36	= : 0.14	b : 0.04	] : 0.02	f : 0.02	r : 0.02	
d : 0.34	= : 0.14	] : 0.12	c : 0.12	2 : 0.10	4 : 0.06	a : 0.02	3 : 0.02	f : 0.02	b : 0.02	
2 : 0.19	= : 0.17	] : 0.14	3 : 0.12	4 : 0.08	a : 0.08	c : 0.06	f : 0.02	[ : 0.02	g : 0.02	b : 0.02	e : 0.02	i : 0.02	
= : 0.17	c : 0.14	3 : 0.12	4 : 0.10	] : 0.10	2 : 0.10	b : 0.08	i : 0.06	e : 0.04	g : 0.02	a : 0.02	
c : 0.25	= : 0.23	4 : 0.10	3 : 0.10	b : 0.08	i : 0.06	] : 0.06	e : 0.04	g : 0.02	2 : 0.02	
c : 0.34	= : 0.27	i : 0.10	g : 0.06	4 : 0.04	e : 0.04	b : 0.04	] : 0.04	a : 0.02	[ : 0.02	
= : 0.38	c : 0.21	i : 0.12	g : 0.08	] : 0.08	e : 0.04	4 : 0.02	b : 0.02	f : 0.02	
= : 0.42	i : 0.17	c : 0.12	g : 0.08	] : 0.06	b : 0.04	a : 0.04	e : 0.02	f : 0.02	
= : 0.42	i : 0.17	g : 0.08	c : 0.08	2 : 0.06	3 : 0.04	b : 0.04	f : 0.04	] : 0.02	4 : 0.02	
= : 0.36	i : 0.17	c : 0.10	g : 0.08	2 : 0.08	f : 0.06	3 : 0.04	] : 0.04	4 : 0.02	[ : 0.02	
= : 0.31	i : 0.19	g : 0.12	c : 0.08	f : 0.08	3 : 0.04	2 : 0.04	] : 0.04	a : 0.02	d : 0.02	4 : 0.02	
= : 0.31	i : 0.19	g : 0.14	f : 0.08	c : 0.06	] : 0.04	d : 0.04	a : 0.02	b : 0.02	4 : 0.02	2 : 0.02	3 : 0.02	
= : 0.31	i : 0.14	d : 0.10	g : 0.10	c : 0.06	f : 0.06	3 : 0.04	] : 0.04	a : 0.04	4 : 0.04	b : 0.02	
= : 0.36	i : 0.14	d : 0.12	g : 0.08	f : 0.06	c : 0.04	3 : 0.04	4 : 0.04	] : 0.04	C : 0.02	[ : 0.02	
= : 0.34	d : 0.12	i : 0.10	g : 0.08	c : 0.04	: : 0.04	4 : 0.04	f : 0.04	2 : 0.04	a : 0.04	3 : 0.02	C : 0.02	] : 0.02	e : 0.02	
= : 0.31	d : 0.10	i : 0.08	g : 0.08	2 : 0.08	: : 0.06	e : 0.04	f : 0.04	b : 0.04	4 : 0.04	] : 0.02	C : 0.02	a : 0.02	c : 0.02	

#score	827.056508451781
#seq	47
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_UTR_m3_run1.txt

#BEAR
cc[cccooooooccc]ccc	chr5:140027010-140027278(-)$1	268	243	262	12.0525
hhhhhaooooooa]hhhhh	chr1:17766017-17766251(-)$1	234	9	28	10.1449
ffffffooooooffffff]	chr11:18420876-18421114(+)$1	238	43	62	11.9108
ccc[bboooooobb]ccc:	chr12:98995147-98995424(+)$1	277	55	74	10.3918
c[ddddoooooodddd]cc	chr18:43671588-43671882(-)$1	294	90	109	10.3527
eeee[aooooooaeeeee]	chr22:22890357-22890592(-)$1	235	139	158	11.1058
="""bboooooobb333==	chr9:32572935-32573188(-)$1	253	38	57	11.0017
a"""bboooooobb4444a	chr1:113498640-113498926(-)$1	286	146	165	10.4826
ffffffooooooffffffg	chr4:100871263-100871533(-)$1	270	43	62	11.8255
hhh[bboooooobb]hhhh	chr6:33385160-33385418(-)$1	258	215	234	10.2211
hhhhhaooooooa]hhhhh	chr19:49507519-49507773(+)$1	254	175	194	10.1449
dddcccooooooccc]ddd	chr17:79478350-79478582(-)$1	232	132	151	10.7328
feeeeeooooooeeeee:b	chr1:10464123-10464329(+)$1	206	163	182	9.6439
cc[cccooooooccc]ccc	chr7:99691694-99691949(-)$1	255	140	159	12.0525
hhhhhhoooooohhhhhhh	chr8:11695990-11696251(+)$1	261	151	170	9.6554
"""cccooooooccc333c	chrX:48433949-48434156(+)$1	207	40	59	11.4388
ffffffooooooffffff:	chr1:111992035-111992304(+)$1	269	186	205	10.9894
eebb[aooooooa]bb]ee	chr17:28575998-28576291(-)$1	293	250	269	9.8766
$eeeeeooooooeeeeeff	chr17:57728557-57728777(+)$1	220	104	123	10.5132
ffffffooooooffffffb	chr5:85913709-85914005(+)$1	296	152	171	11.6278
#eeeeeooooooeeeee44	chr2:32502888-32503290(+)$1	402	344	363	10.6711
[eeeeeooooooeeeee33	chr3:38295601-38295849(+)$1	248	153	172	11.0387
!!ddddoooooodddd444	chr17:66033477-66033711(+)$1	234	28	47	9.9726
[eeeeeooooooeeeee33	chr8:37996381-37996628(+)$1	247	10	29	11.0387
ffffffooooooffffff:	chr16:88876436-88876656(-)$1	220	94	113	10.9894
bb[cccoooooocccbb:c	chr12:57892102-57892397(+)$1	295	184	203	9.6422
hhhhhhoooooohhhhhhh	chr12:131359039-131359326(+)$1	287	198	217	9.6554
bb[cccooooooccc]bb2	chr5:137895491-137895766(-)$1	275	145	164	10.7867
cc[cccooooooccc]ccc	chr14:69864863-69865110(-)$1	247	189	208	12.0525
ii"""aooooooa333iii	chr11:14539411-14539627(-)$1	216	60	79	11.5265
ggggggooooooggggggg	chr14:103523437-103523645(-)$1	208	13	32	11.8461
cc[cccooooooccc]ccc	chr16:88717305-88717556(-)$1	251	87	106	12.0525
ffffffooooooffffff2	chr22:19423249-19423606(+)$1	357	122	141	11.7286
c"""bboooooobb333cc	chr19:810827-811137(+)$1	310	38	57	11.1303
ggggggooooooggggggg	chr11:122931849-122932068(-)$1	219	75	94	11.8461
ffffffooooooffffff]	chr17:4701203-4701466(+)$1	263	232	251	11.9108
ffffffooooooffffff4	chr12:56553687-56553933(+)$1	246	199	218	11.8505
:eeeeeooooooeeeeeee	chr19:1250149-1250386(+)$1	237	19	38	9.5414
hhhhhhoooooohhhhhhh	chrX:153627742-153628019(+)$1	277	128	147	9.6554
ddd[bboooooobb]dddd	chrX:47053243-47053521(+)$1	278	223	242	10.0917
ffffffooooooffffff3	chr1:235292003-235292251(-)$1	248	22	41	11.9520
dd!!bboooooobb22ddd	chrX:48752218-48752485(-)$1	267	26	45	10.1962
ff"""aooooooa22ffff	chr11:85779698-85779959(-)$1	261	16	35	11.0990
c[ddddooooooddddccc	chr20:5100334-5100613(-)$1	279	229	248	10.3492
ffffffoooooofffffff	chr11:134118188-134118464(-)$1	276	72	91	11.6997
ffffffooooooffffff:	chr12:49522522-49522773(-)$1	251	5	24	10.9894
!!ddddooooooddddfff	chr17:74732850-74733130(-)$1	280	205	224	10.1774
ggggggooooooggggggg	chr16:18812652-18812964(-)$1	312	41	60	11.8461
$eeeeeooooooeeeeebb	chr22:22893273-22893526(-)$1	253	14	33	10.1583
ffffffooooooffffff3	chr1:201104631-201104898(-)$1	267	173	192	11.9520
fff!!aooooooa22ffff	chr19:49611265-49611523(+)$1	258	100	119	11.3239
dd[a[aooooooa]adddd	chrX:119005757-119005974(+)$1	217	115	134	10.6237
ggggggooooooggggggg	chr6:27775169-27775390(-)$1	221	147	166	11.8461
fff[bboooooobb]ffff	chr14:21737415-21737684(-)$1	269	191	210	11.3630
ffffffooooooffffff4	chr19:51857305-51857552(-)$1	247	126	145	11.8505
cc[cccooooooccc22cc	chr5:159849274-159849513(+)$1	239	54	73	11.5486
dd!!bboooooobb22ddd	chr11:47605841-47606172(+)$1	331	179	198	10.1962
hhhhhhoooooohhhhhhh	chr11:61067503-61067791(-)$1	288	14	33	9.6554
ffffffooooooffffff4	chr12:56553753-56554007(+)$1	254	133	152	11.8505
ggggggooooooggggggg	chr5:85913659-85913889(+)$1	230	202	221	11.8461
ffffffooooooffffff:	chr1:46769273-46769542(+)$1	269	52	71	10.9894

#otherMatches

#Seq PSSM
CGGGACGCCAGGGUCACGA	chr5:140027010-140027278(-)$1	268	243	262	12.0525
gcgcgcUCGCUUGCCGCGC	chr1:17766017-17766251(-)$1	234	9	28	10.1449
CUUCUAAAAAUCUAGAAGU	chr11:18420876-18421114(+)$1	238	43	62	11.9108
AGUGGUUUAUCUAUGACUC	chr12:98995147-98995424(+)$1	277	55	74	10.3918
UGAAGAGCGUAUUCUUGGA	chr18:43671588-43671882(-)$1	294	90	109	10.3527
UUGGACACUAAAGCCAGGA	chr22:22890357-22890592(-)$1	235	139	158	11.1058
CAAGGUCGCUUUGCAGAGC	chr9:32572935-32573188(-)$1	253	38	57	11.0017
GGUACUGGAACAAGCAAAC	chr1:113498640-113498926(-)$1	286	146	165	10.4826
GUUCCCGGAUGAGGGAACA	chr4:100871263-100871533(-)$1	270	43	62	11.8255
UGGGGCAGAAGAGUGCUGC	chr6:33385160-33385418(-)$1	258	215	234	10.2211
AGGAACUCUCCUGUUUCCU	chr19:49507519-49507773(+)$1	254	175	194	10.1449
UCAUGAAGAUCCUCACUGA	chr17:79478350-79478582(-)$1	232	132	151	10.7328
GGGGCCCGGUAUGGCCCAU	chr1:10464123-10464329(+)$1	206	163	182	9.6439
UUUCCACUGCUCUGGUAAG	chr7:99691694-99691949(-)$1	255	140	159	12.0525
GUCCACCAUAAAGUGGAUU	chr8:11695990-11696251(+)$1	261	151	170	9.6554
UUUGGUUUCAUCACCUUCA	chrX:48433949-48434156(+)$1	207	40	59	11.4388
GCUCUGGACUAUCAGAGUG	chr1:111992035-111992304(+)$1	269	186	205	10.9894
UGAGUGAUACUGCCCUCCA	chr17:28575998-28576291(-)$1	293	250	269	9.8766
UCCUGUUGCAAUGCAGGUA	chr17:57728557-57728777(+)$1	220	104	123	10.5132
CCAGCAGCGGUAUGUUGGG	chr5:85913709-85914005(+)$1	296	152	171	11.6278
UCCGGGCCCGCCCCCGGCC	chr2:32502888-32503290(+)$1	402	344	363	10.6711
CAAGGUUGUUUUACCUUAU	chr3:38295601-38295849(+)$1	248	153	172	11.0387
GGAGCUGAGGAAAGCUAAG	chr17:66033477-66033711(+)$1	234	28	47	9.9726
CUGUGAGUAACAUUACAAA	chr8:37996381-37996628(+)$1	247	10	29	11.0387
CUCCAGGCUGAGCUGGAGA	chr16:88876436-88876656(-)$1	220	94	113	10.9894
GGAGGGACUAACCCCCCAG	chr12:57892102-57892397(+)$1	295	184	203	9.6422
AGGCGAAAUCCAUUGUCUU	chr12:131359039-131359326(+)$1	287	198	217	9.6554
GAAACUCUAGGAGGUGUCU	chr5:137895491-137895766(-)$1	275	145	164	10.7867
AGUCCGAGUCCCCGGCCUC	chr14:69864863-69865110(-)$1	247	189	208	12.0525
AUCUUCUAAGAUGUGUGUU	chr11:14539411-14539627(-)$1	216	60	79	11.5265
GCGGCGAGGAGGCGCCGCU	chr14:103523437-103523645(-)$1	208	13	32	11.8461
GGGGCGGCAGUGCGCGCCU	chr16:88717305-88717556(-)$1	251	87	106	12.0525
CCCUUUGAGAAGGAAGGGC	chr22:19423249-19423606(+)$1	357	122	141	11.7286
UCCAUCAUUCCAGAGAAAA	chr19:810827-811137(+)$1	310	38	57	11.1303
ACCUACUCUUGUGUGGGUG	chr11:122931849-122932068(-)$1	219	75	94	11.8461
UUCACUGCCAAUGGUGAGA	chr17:4701203-4701466(+)$1	263	232	251	11.9108
GGCACCGUCAUGGGUGCUG	chr12:56553687-56553933(+)$1	246	199	218	11.8505
CGCGCGCUGCUCCGCGCCC	chr19:1250149-1250386(+)$1	237	19	38	9.5414
AGUGGAUGAGUUUCCGCUU	chrX:153627742-153628019(+)$1	277	128	147	9.6554
UUCGGGGAGGCACUGGAGG	chrX:47053243-47053521(+)$1	278	223	242	10.0917
GGGCCUCUGCUCAGGCUCU	chr1:235292003-235292251(-)$1	248	22	41	11.9520
CCCUCUCUUAAAAGUUGGA	chrX:48752218-48752485(-)$1	267	26	45	10.1962
GCAGGCGGGGAAGGAGCCG	chr11:85779698-85779959(-)$1	261	16	35	11.0990
GACCUCAUCAACGAGGCCU	chr20:5100334-5100613(-)$1	279	229	248	10.3492
UUUUUUUUUUGUAGAAGAG	chr11:134118188-134118464(-)$1	276	72	91	11.6997
UAAUGUGUCCUGGCAUUAA	chr12:49522522-49522773(-)$1	251	5	24	10.9894
ACCCCGCAGGUACGGGGGC	chr17:74732850-74733130(-)$1	280	205	224	10.1774
GCCGUCGGGAAGGGCGGCC	chr16:18812652-18812964(-)$1	312	41	60	11.8461
GGGUUCCAUUCAGAGCCGA	chr22:22893273-22893526(-)$1	253	14	33	10.1583
AGGGGGCUACUUCUCCCUU	chr1:201104631-201104898(-)$1	267	173	192	11.9520
CUGAUGAUGGGCCUCCAGG	chr19:49611265-49611523(+)$1	258	100	119	11.3239
AGAUGUGGUUCGAGAUUCU	chrX:119005757-119005974(+)$1	217	115	134	10.6237
AAGAGCUGGUUCGCUCUUC	chr6:27775169-27775390(-)$1	221	147	166	11.8461
AGACUCAGAAUCGAAUCUC	chr14:21737415-21737684(-)$1	269	191	210	11.3630
GCUGUGGGCCUGCACAGUG	chr19:51857305-51857552(-)$1	247	126	145	11.8505
CUGAUCUAUGUUGAUAAGG	chr5:159849274-159849513(+)$1	239	54	73	11.5486
UGAUGCCAAGUAGCUCCAG	chr11:47605841-47606172(+)$1	331	179	198	10.1962
GCCUCCUUCACUGGGGGCA	chr11:61067503-61067791(-)$1	288	14	33	9.6554
GGCACCGUCAUGGGUGCUG	chr12:56553753-56554007(+)$1	254	133	152	11.8505
CCAGCAGCGGUAUGUUGGG	chr5:85913659-85913889(+)$1	230	202	221	11.8461
UCCGGCCAGAUCGCCGGAU	chr1:46769273-46769542(+)$1	269	52	71	10.9894

#DB
((.(((......))).)))	chr5:140027010-140027278(-)$1	1	243	262	12.0525
((((((......).)))))	chr1:17766017-17766251(-)$1	1	9	28	10.1449
((((((......)))))).	chr11:18420876-18421114(+)$1	1	43	62	11.9108
(((.((......)).))).	chr12:98995147-98995424(+)$1	1	55	74	10.3918
(.((((......)))).))	chr18:43671588-43671882(-)$1	1	90	109	10.3527
((((.(......)))))).	chr22:22890357-22890592(-)$1	1	139	158	11.1058
(...((......))...))	chr9:32572935-32573188(-)$1	1	38	57	11.0017
(...((......))....)	chr1:113498640-113498926(-)$1	1	146	165	10.4826
((((((......))))))(	chr4:100871263-100871533(-)$1	1	43	62	11.8255
(((.((......)).))))	chr6:33385160-33385418(-)$1	1	215	234	10.2211
((((((......).)))))	chr19:49507519-49507773(+)$1	1	175	194	10.1449
((((((......))).)))	chr17:79478350-79478582(-)$1	1	132	151	10.7328
)(((((......))))).(	chr1:10464123-10464329(+)$1	1	163	182	9.6439
((.(((......))).)))	chr7:99691694-99691949(-)$1	1	140	159	12.0525
((((((......)))))))	chr8:11695990-11696251(+)$1	1	151	170	9.6554
...(((......)))...)	chrX:48433949-48434156(+)$1	1	40	59	11.4388
((((((......)))))).	chr1:111992035-111992304(+)$1	1	186	205	10.9894
((((.(......).)).))	chr17:28575998-28576291(-)$1	1	250	269	9.8766
.(((((......)))))))	chr17:57728557-57728777(+)$1	1	104	123	10.5132
((((((......))))))(	chr5:85913709-85914005(+)$1	1	152	171	11.6278
.(((((......)))))..	chr2:32502888-32503290(+)$1	1	344	363	10.6711
.(((((......)))))..	chr3:38295601-38295849(+)$1	1	153	172	11.0387
..((((......))))...	chr17:66033477-66033711(+)$1	1	28	47	9.9726
.(((((......)))))..	chr8:37996381-37996628(+)$1	1	10	29	11.0387
((((((......)))))).	chr16:88876436-88876656(-)$1	1	94	113	10.9894
((.(((......))))).(	chr12:57892102-57892397(+)$1	1	184	203	9.6422
((((((......)))))))	chr12:131359039-131359326(+)$1	1	198	217	9.6554
((.(((......))).)).	chr5:137895491-137895766(-)$1	1	145	164	10.7867
((.(((......))).)))	chr14:69864863-69865110(-)$1	1	189	208	12.0525
((...(......)...)))	chr11:14539411-14539627(-)$1	1	60	79	11.5265
((((((......)))))))	chr14:103523437-103523645(-)$1	1	13	32	11.8461
((.(((......))).)))	chr16:88717305-88717556(-)$1	1	87	106	12.0525
((((((......)))))).	chr22:19423249-19423606(+)$1	1	122	141	11.7286
(...((......))...))	chr19:810827-811137(+)$1	1	38	57	11.1303
((((((......)))))))	chr11:122931849-122932068(-)$1	1	75	94	11.8461
((((((......)))))).	chr17:4701203-4701466(+)$1	1	232	251	11.9108
((((((......)))))).	chr12:56553687-56553933(+)$1	1	199	218	11.8505
.(((((......)))))((	chr19:1250149-1250386(+)$1	1	19	38	9.5414
((((((......)))))))	chrX:153627742-153628019(+)$1	1	128	147	9.6554
(((.((......)).))))	chrX:47053243-47053521(+)$1	1	223	242	10.0917
((((((......)))))).	chr1:235292003-235292251(-)$1	1	22	41	11.9520
((..((......))..)))	chrX:48752218-48752485(-)$1	1	26	45	10.1962
((...(......)..))))	chr11:85779698-85779959(-)$1	1	16	35	11.0990
(.((((......)))))))	chr20:5100334-5100613(-)$1	1	229	248	10.3492
((((((......))))))(	chr11:134118188-134118464(-)$1	1	72	91	11.6997
((((((......)))))).	chr12:49522522-49522773(-)$1	1	5	24	10.9894
..((((......)))))))	chr17:74732850-74733130(-)$1	1	205	224	10.1774
((((((......)))))))	chr16:18812652-18812964(-)$1	1	41	60	11.8461
.(((((......)))))))	chr22:22893273-22893526(-)$1	1	14	33	10.1583
((((((......)))))).	chr1:201104631-201104898(-)$1	1	173	192	11.9520
(((..(......)..))))	chr19:49611265-49611523(+)$1	1	100	119	11.3239
((.(.(......).)))))	chrX:119005757-119005974(+)$1	1	115	134	10.6237
((((((......)))))))	chr6:27775169-27775390(-)$1	1	147	166	11.8461
(((.((......)).))))	chr14:21737415-21737684(-)$1	1	191	210	11.3630
((((((......)))))).	chr19:51857305-51857552(-)$1	1	126	145	11.8505
((.(((......)))..))	chr5:159849274-159849513(+)$1	1	54	73	11.5486
((..((......))..)))	chr11:47605841-47606172(+)$1	1	179	198	10.1962
((((((......)))))))	chr11:61067503-61067791(-)$1	1	14	33	9.6554
((((((......)))))).	chr12:56553753-56554007(+)$1	1	133	152	11.8505
((((((......)))))))	chr5:85913659-85913889(+)$1	1	202	221	11.8461
((((((......)))))).	chr1:46769273-46769542(+)$1	1	52	71	10.9894

#PSSM
f : 0.31	c : 0.14	h : 0.11	d : 0.08	g : 0.08	e : 0.03	$ : 0.03	[ : 0.03	! : 0.03	b : 0.03	= : 0.01	a : 0.01	" : 0.01	# : 0.01	i : 0.01	: : 0.01	
f : 0.29	e : 0.14	h : 0.11	c : 0.09	d : 0.08	g : 0.08	" : 0.06	[ : 0.03	! : 0.03	b : 0.03	i : 0.01	
f : 0.27	[ : 0.13	e : 0.13	h : 0.11	d : 0.09	" : 0.09	g : 0.08	! : 0.03	c : 0.01	b : 0.01	
f : 0.24	c : 0.14	e : 0.13	h : 0.09	" : 0.08	g : 0.08	[ : 0.06	d : 0.06	! : 0.04	b : 0.01	a : 0.01	
f : 0.24	c : 0.14	b : 0.14	e : 0.11	h : 0.09	g : 0.08	d : 0.06	[ : 0.04	" : 0.03	! : 0.01	
f : 0.24	c : 0.14	b : 0.14	a : 0.13	e : 0.11	g : 0.08	d : 0.06	h : 0.06	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
f : 0.24	c : 0.14	b : 0.14	a : 0.13	e : 0.11	g : 0.08	d : 0.06	h : 0.06	
f : 0.24	c : 0.14	b : 0.14	e : 0.13	g : 0.08	] : 0.06	d : 0.06	h : 0.06	2 : 0.03	3 : 0.01	
f : 0.24	c : 0.14	e : 0.13	h : 0.09	g : 0.08	] : 0.06	d : 0.06	2 : 0.06	3 : 0.04	4 : 0.01	b : 0.01	a : 0.01	
f : 0.29	e : 0.13	h : 0.11	] : 0.09	d : 0.09	g : 0.08	3 : 0.06	2 : 0.04	b : 0.03	c : 0.01	4 : 0.01	
f : 0.31	e : 0.13	h : 0.11	c : 0.09	d : 0.08	g : 0.08	3 : 0.04	] : 0.03	4 : 0.03	b : 0.03	i : 0.01	2 : 0.01	
f : 0.32	c : 0.14	h : 0.11	d : 0.08	g : 0.08	e : 0.04	4 : 0.04	3 : 0.04	: : 0.03	b : 0.03	= : 0.01	i : 0.01	
c : 0.16	h : 0.11	g : 0.09	f : 0.09	: : 0.08	d : 0.08	4 : 0.08	3 : 0.06	] : 0.04	b : 0.04	e : 0.03	2 : 0.03	= : 0.01	a : 0.01	i : 0.01	

#score	668.7077309820984
#seq	61
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_transcript_m1_run1.txt

#BEAR
eee[bb"""gggggggooooooggggggg333bb]eeeee	chr16:81598488-81598749(+)$1	261	153	193	15.8565
hhhhhhhhaccc[cccooooooccc]ccc4444a]hhhhh	chr11:65211550-65211764(+)$1	214	81	121	17.2780
hhhhhhhhaccc[cccooooooccc]ccc4444a]hhhhh	chr11:65211539-65211746(+)$1	207	92	132	17.2780
eeee[dddd!!a[bboooooobb]a]dddd]eeeeegggg	chr11:65197269-65197479(+)$1	210	144	184	13.5881
ggggggg!!ffffff[ccclllccc]ffffff]ggggggg	chr2:10335641-10335889(+)$1	248	180	220	13.5676
!!hhhhhhhh[bb[aaooooooa]a]bb]hhhhhhhh22d	chr17:70548960-70549215(-)$1	255	209	249	14.0494
========!!eeeee[ccclllccc22eeeee]=======	chr6:154830274-154830536(-)$1	262	33	73	13.9870
fff[ccc!!bb[ddddoooooodddd]bbccc]ffffff:	chr3:61548206-61548429(+)$1	223	61	101	13.1811
hhccc[===========rrrrrrrrr===========22c	chr11:65202952-65203167(+)$1	215	70	110	13.9051
fffff!!ffffff[aaooooooa]a]ffffffffffff]d	chr19:39621424-39621740(+)$1	316	21	61	14.8325
========ffffff[annnnna]ffffff]==========	chr11:65197360-65197595(+)$1	235	10	50	14.4369
==[a!!ffffff[cccooooooccc333ffffff22a]==	chr7:127671027-127671301(+)$1	274	13	53	17.4068
[dddd[bb####ddddoooooodddd4444bb]ddddccc	chr19:1411125-1411374(+)$1	249	98	138	14.9605
ccggggggg[ccccccooooooccc]ccc]gggggggBB}	chr21:47563054-47563304(-)$1	250	113	153	16.1757
=========!!eeeeeooooooeeeee4444=========	chr11:65194249-65194474(+)$1	225	92	132	18.4134
eee[a!!bb####bbbboooooobb]bb22bb22a]eeee	chr6:158987668-158987927(+)$1	259	125	165	13.2237
b[a!!ccc!!ccc[ddddllldddd]ccc]ccc22a]bb]	chr7:47367239-47367514(-)$1	275	39	79	12.1910
iiiiii[dddd!!cccooooooccc333ddddiiiiiiii	chr17:41622796-41623050(+)$1	254	4	44	18.4472
=========!!eeeeeooooooeeeee4444=========	chr11:65194296-65194537(+)$1	241	45	85	18.4134
[dddd[cccccc[cccooooooccc333ccc]ccc333dd	chr11:65203463-65203699(+)$1	236	55	95	18.1495
[dddd!!ccc"""cccooooooccc333ccc22dddd]ff	chr2:240319226-240319469(-)$1	243	52	92	17.6015
gggggg!!ccc"""bbmmmmbb4444ccc22ggggggg44	chr17:70484061-70484328(-)$1	267	70	110	12.7540
ee[ccc"""ccc[cccoooooocccccc22ccc]eeeee]	chr8:142412197-142412441(+)$1	244	125	165	17.1844
========="""cccpppppppccc============fff	chr11:65194107-65194340(+)$1	233	120	160	13.3736
hhggggggg[ccccccooooooccc]ccc]ggggggg22h	chr21:47562996-47563254(-)$1	258	63	103	18.6931
a[eeeee!!gggggggooooooggggggg22eeeee]a33	chr11:63865661-63865914(-)$1	253	207	247	15.8743
========ffffff[annnnna]ffffff]==========	chr11:65197338-65197547(+)$1	209	32	72	14.4369
ggggbb[iiiiiiiiiooooooiiiiiiiii22bb]gggg	chr8:128851940-128852229(+)$1	289	238	278	16.6913
iiiiiiiii!!ccc[aooooooa]ccc22iiiiiiiii33	chr2:47403101-47403350(-)$1	249	119	159	18.9157
hhhhhhhhaccc[cccooooooccc]ccc4444a]hhhhh	chr11:65211564-65211777(+)$1	213	67	107	17.2780
========"""eeeeeooooooeeeee333==========	chr13:113347716-113347981(+)$1	265	157	197	18.7545
ggggg[a[ccc[ccccccmmmmccc]ccc]ccca]ggggg	chr1:17989116-17989416(+)$1	300	197	237	14.5216
%ggggggg####ddddoooooodddd4444ggggggg666	chr11:65203402-65203610(+)$1	208	21	61	15.7179
ggggga[bb[a[ffffffooooooffffff]a]bb]a22g	chr16:50657664-50657941(+)$1	277	80	120	13.1589
ccc[bb"""eeeee[aooooooa]eeeeebb]ccc]eeee	chr20:1308723-1308980(+)$1	257	30	70	14.3426
##eeeeedddd[a[aooooooaadddd]eeeee333a22c	chr1:16470327-16470606(-)$1	279	185	225	13.8375
gggggggiiiiiiiiinnnnniiiiiiiii333ggggggg	chr7:2677936-2678220(+)$1	284	176	216	14.7918
[a[dddd!!ccc!!cccmmmmccc22ccc]dddd]a]a33	chr17:63555178-63555487(-)$1	309	255	295	12.5416
eeeegggggggcccbboooooobb]ccc4444ggggggg]	chr16:75280523-75280757(-)$1	234	171	211	16.7825
[dddd[cccccc[cccooooooccc333ccc]ccc333dd	chr11:65203447-65203663(+)$1	216	71	111	18.1495
##ffffff####ddddoooooodddd333ffffff4444a	chr6:129989566-129989842(-)$1	276	13	53	15.3248
!gggggggiiiiiiiii[annnnna]iiiiiiiii333gg	chr7:1577319-1577596(+)$1	277	109	149	13.4055
ee####dddd"""cccooooooccc333dddd]eeeee::	chr11:378817-379113(+)$1	296	228	268	14.5786
ggggggccc[bb[ccclllccc]bb]ccc]ggggggg]cc	chr16:75272033-75272288(-)$1	255	182	222	13.5937
eee[ddddffffff!!aooooooa22ffffff]dddd]ee	chr2:3289720-3290062(-)$1	342	178	218	13.2944
eeee!!eeeee!!cccooooooccc]eeeee22eeeeeee	chr14:100052942-100053249(-)$1	307	113	153	15.8760
a[===========[bboooooobb===========]a]dd	chr20:17661262-17661526(-)$1	264	20	60	18.0903
[bb####ccc"""arrrrrrrrra333ccc4444bb]ddd	chr7:100137273-100137526(+)$1	253	91	131	12.5100
[a[eeeee####ddddooooooddddeeeee]a]ccc::i	chr17:70553368-70553613(-)$1	245	65	105	13.5495

#otherMatches

#Seq PSSM
GGUGCCUGGUGAAGGGCUAAGACCCUUCAAGCGGGGCCUU	chr16:81598488-81598749(+)$1	261	153	193	15.8565
GUGGGGGAGGGGGCAAAGGCAGUUGGCCCAACACAUUCCC	chr11:65211550-65211764(+)$1	214	81	121	17.2780
GUGGGGGAGGGGGCAAAGGCAGUUGGCCCAACACAUUCCC	chr11:65211539-65211746(+)$1	207	92	132	17.2780
UCAGAAGACCUUGAGGGCAGGCUGAUGUUUCCUGAAUGGG	chr11:65197269-65197479(+)$1	210	144	184	13.5881
UCCCUGACUGCCCAGCAGCAGUGUUCUUGGGCCUCAGGGA	chr2:10335641-10335889(+)$1	248	180	220	13.5676
AGGUUUAUGGGAUGGCUGGGUUGAUGAUGCUGUGGACACU	chr17:70548960-70549215(-)$1	255	209	249	14.0494
ACUGUCUUGAUUCAUACAAUAUUUGGGAUGAGGAAGGCAG	chr6:154830274-154830536(-)$1	262	33	73	13.9870
GAGGGGGCUGGGGGACGCGGGGGUCUGCUCCCGCUCCCUU	chr3:61548206-61548429(+)$1	223	61	101	13.1811
ugcaucccucugggugcaGAGCUGAGGCACCCAGAGGCAG	chr11:65202952-65203167(+)$1	215	70	110	13.9051
ggaagucaucagaggcuuuagugacaucugguuuuccccu	chr19:39621424-39621740(+)$1	316	21	61	14.8325
GCCCUGUCCUGUGAGGGUGGUUGUCACAGUGGCAGGGUUC	chr11:65197360-65197595(+)$1	235	10	50	14.4369
UUCCGACUUCUUAGUUUUAAUUAACAAAAGGGGGAAGUGG	chr7:127671027-127671301(+)$1	274	13	53	17.4068
GAGGCAGGUCUCCUGGGCUCUGUCAGCACUCUGGCCUGGA	chr19:1411125-1411374(+)$1	249	98	138	14.9605
AUGUGCCCCAGCCUCUGGAGCAGGGCGGUGGGGGCGCCUG	chr21:47563054-47563304(-)$1	250	113	153	16.1757
UUUUUGUUUGGUUAGGGGAAAGCCUGAAUAAAAACAGAAA	chr11:65194249-65194474(+)$1	225	92	132	18.4134
GAGGUGAUGAUGAGGCUGUGGAGAGACCGACGGAAGUUUU	chr6:158987668-158987927(+)$1	259	125	165	13.2237
UGAAACUUGAUCUCCUGGGCUCCAGUGGAGGGGGGUGGGG	chr7:47367239-47367514(-)$1	275	39	79	12.1910
GGUCCUCGGGUGACUCAGGGGCGGGGCAGCCCAGGACUCC	chr17:41622796-41623050(+)$1	254	4	44	18.4472
UUUUUGUUUGGUUAGGGGAAAGCCUGAAUAAAAACAGAAA	chr11:65194296-65194537(+)$1	241	45	85	18.4134
UGCUUCAGGGGCUAAGCACACACUUUCUGUCUUCUAAAGG	chr11:65203463-65203699(+)$1	236	55	95	18.1495
AUACGGUCAGUUUUCUUCUCUUGGGCUUCUGUGCGUGGGA	chr2:240319226-240319469(-)$1	243	52	92	17.6015
GCGGGCAACCACAACCACAUGGCGACUGGAAGCCUGCUAA	chr17:70484061-70484328(-)$1	267	70	110	12.7540
GGGGCUGAAGGCAUGGAUGGGACCAGUCGGGGUACUUGUG	chr8:142412197-142412441(+)$1	244	125	165	17.1844
UUGGUUUGAAAUGUGAUGAAACCACUCAAGCCAAUGAAGG	chr11:65194107-65194340(+)$1	233	120	160	13.3736
AUGUGCCCCAGCCUCUGGAGCAGGGCGGUGGGGGCGCCUG	chr21:47562996-47563254(-)$1	258	63	103	18.6931
ggggccuggucuuuguacaagggcaggggggaggcuguga	chr11:63865661-63865914(-)$1	253	207	247	15.8743
GCCCUGUCCUGUGAGGGUGGUUGUCACAGUGGCAGGGUUC	chr11:65197338-65197547(+)$1	209	32	72	14.4369
gugccucccauuggcuaaacacaguugauggccagugcac	chr8:128851940-128852229(+)$1	289	238	278	16.6913
GCCUUCUGUCGGGCGUCUGGAAAGGUCAAGCAGGGGGCGA	chr2:47403101-47403350(-)$1	249	119	159	18.9157
GUGGGGGAGGGGGCAAAGGCAGUUGGCCCAACACAUUCCC	chr11:65211564-65211777(+)$1	213	67	107	17.2780
uguguuguggaguaguguaugugcuaugggguagCAUAUG	chr13:113347716-113347981(+)$1	265	157	197	18.7545
CAGCUGGCUCAGAGGGGAAGGGUCUGCCUGUGAUGGGCUG	chr1:17989116-17989416(+)$1	300	197	237	14.5216
UUCACUUGUCUGUUUAGUUUGUUGAAAUCUUAAGUGGCAU	chr11:65203402-65203610(+)$1	208	21	61	15.7179
acguguguagggguaugcguguguguguguguguAGGGGU	chr16:50657664-50657941(+)$1	277	80	120	13.1589
ugggaguugguguuguguuuagaggacaucugccagugag	chr20:1308723-1308980(+)$1	257	30	70	14.3426
CCCUUCUGCAGAGACGACAGGGCCUGCUGGGAGCAAGAAG	chr1:16470327-16470606(-)$1	279	185	225	13.8375
CUGGCCUCCUUCCAGGCCAUUCCUGGAGGGUGAGGGCCAG	chr7:2677936-2678220(+)$1	284	176	216	14.7918
GGGAGGGAAGGCGAGGCGCGGGCUGAGCUGCCCUGCGUGC	chr17:63555178-63555487(-)$1	309	255	295	12.5416
GGGCUUAUCUGGCCGUGGGGAAGCUGGUUGUGCGGAUGAC	chr16:75280523-75280757(-)$1	234	171	211	16.7825
UGCUUCAGGGGCUAAGCACACACUUUCUGUCUUCUAAAGG	chr11:65203447-65203663(+)$1	216	71	111	18.1495
UACAGGCAAGGCUUCUGGGGUAGGAAAAGUGCCUGGUGGG	chr6:129989566-129989842(-)$1	276	13	53	15.3248
GCUCCCUGGCCCAGGGUGUGGGGAGGGUCCUGGGCUGGCA	chr7:1577319-1577596(+)$1	277	109	149	13.4055
ACAAAAGCCCCUUGGAACCUUGUCCUAUGGGCGGUGGCUA	chr11:378817-379113(+)$1	296	228	268	14.5786
GCCCCUACCCGCUUCAGGCUGGUGCUGGUGAGGGGUCCUG	chr16:75272033-75272288(-)$1	255	182	222	13.5937
cuggaguccugggaagguuuguucacucccaguggcugca	chr2:3289720-3290062(-)$1	342	178	218	13.2944
GGGCGGCCGGCAGAGCAGAGUGGCUGGCUGGGGGUCCCCC	chr14:100052942-100053249(-)$1	307	113	153	15.8760
ACCCAGCACUUGUAGGAAGGAGCCACAAGUGUUGGCUGUU	chr20:17661262-17661526(-)$1	264	20	60	18.0903
gggaaagggcaggggagaggAAGCAAGGCCGGAGUCGCUC	chr7:100137273-100137526(+)$1	253	91	131	12.5100
gugugcgugCCUGGGGGUGUGGUCCUAUGUAAAGAGCUCU	chr17:70553368-70553613(-)$1	245	65	105	13.5495

#DB
(((.((...(((((((......)))))))...)).)))))	chr16:81598488-81598749(+)$1	1	153	193	15.8565
((((((((((((.(((......))).)))....).)))))	chr11:65211550-65211764(+)$1	1	81	121	17.2780
((((((((((((.(((......))).)))....).)))))	chr11:65211539-65211746(+)$1	1	92	132	17.2780
((((.((((..(.((......)).).)))).)))))))))	chr11:65197269-65197479(+)$1	1	144	184	13.5881
(((((((..((((((.(((...))).)))))).)))))))	chr2:10335641-10335889(+)$1	1	180	220	13.5676
..((((((((.((.((......).).)).))))))))..)	chr17:70548960-70549215(-)$1	1	209	249	14.0494
((((((((..(((((.(((...)))..))))).)))))))	chr6:154830274-154830536(-)$1	1	33	73	13.9870
(((.(((..((.((((......)))).))))).)))))).	chr3:61548206-61548429(+)$1	1	61	101	13.1811
(((((.(((((((((((.........)))))))))))..)	chr11:65202952-65203167(+)$1	1	70	110	13.9051
(((((..((((((.((......).).)))))))))))).)	chr19:39621424-39621740(+)$1	1	21	61	14.8325
((((((((((((((.(.....).)))))).))))))))))	chr11:65197360-65197595(+)$1	1	10	50	14.4369
((.(..((((((.(((......)))...))))))..).))	chr7:127671027-127671301(+)$1	1	13	53	17.4068
.((((.((....((((......))))....)).)))))))	chr19:1411125-1411374(+)$1	1	98	138	14.9605
))(((((((.((((((......))).))).))))))))).	chr21:47563054-47563304(-)$1	1	113	153	16.1757
(((((((((..(((((......)))))....)))))))))	chr11:65194249-65194474(+)$1	1	92	132	18.4134
(((.(..((....((((......)).))..))..).))))	chr6:158987668-158987927(+)$1	1	125	165	13.2237
(.(..(((..(((.((((...)))).))).)))..).)).	chr7:47367239-47367514(-)$1	1	39	79	12.1910
((((((.((((..(((......)))...))))))))))))	chr17:41622796-41623050(+)$1	1	4	44	18.4472
(((((((((..(((((......)))))....)))))))))	chr11:65194296-65194537(+)$1	1	45	85	18.4134
.((((.((((((.(((......)))...))).)))...))	chr11:65203463-65203699(+)$1	1	55	95	18.1495
.((((..(((...(((......)))...)))..)))).))	chr2:240319226-240319469(-)$1	1	52	92	17.6015
((((((..(((...((....))....)))..)))))))..	chr17:70484061-70484328(-)$1	1	70	110	12.7540
((.(((...(((.(((......))))))..))).))))).	chr8:142412197-142412441(+)$1	1	125	165	17.1844
(((((((((...(((.......)))))))))))))))(((	chr11:65194107-65194340(+)$1	1	120	160	13.3736
(((((((((.((((((......))).))).)))))))..)	chr21:47562996-47563254(-)$1	1	63	103	18.6931
(.(((((..(((((((......)))))))..))))).)..	chr11:63865661-63865914(-)$1	1	207	247	15.8743
((((((((((((((.(.....).)))))).))))))))))	chr11:65197338-65197547(+)$1	1	32	72	14.4369
((((((.(((((((((......)))))))))..)).))))	chr8:128851940-128852229(+)$1	1	238	278	16.6913
(((((((((..(((.(......).)))..)))))))))..	chr2:47403101-47403350(-)$1	1	119	159	18.9157
((((((((((((.(((......))).)))....).)))))	chr11:65211564-65211777(+)$1	1	67	107	17.2780
((((((((...(((((......)))))...))))))))))	chr13:113347716-113347981(+)$1	1	157	197	18.7545
(((((.(.(((.((((((....))).))).)))).)))))	chr1:17989116-17989416(+)$1	1	197	237	14.5216
.(((((((....((((......))))....)))))))...	chr11:65203402-65203610(+)$1	1	21	61	15.7179
((((((.((.(.((((((......)))))).).)).)..)	chr16:50657664-50657941(+)$1	1	80	120	13.1589
(((.((...(((((.(......).))))))).))).))))	chr20:1308723-1308980(+)$1	1	30	70	14.3426
..(((((((((.(.(......)))))).)))))...)..)	chr1:16470327-16470606(-)$1	1	185	225	13.8375
((((((((((((((((.....)))))))))...)))))))	chr7:2677936-2678220(+)$1	1	176	216	14.7918
.(.((((..(((..(((....)))..))).)))).).)..	chr17:63555178-63555487(-)$1	1	255	295	12.5416
((((((((((((((((......)).)))....))))))).	chr16:75280523-75280757(-)$1	1	171	211	16.7825
.((((.((((((.(((......)))...))).)))...))	chr11:65203447-65203663(+)$1	1	71	111	18.1495
..((((((....((((......))))...))))))....)	chr6:129989566-129989842(-)$1	1	13	53	15.3248
.((((((((((((((((.(.....).)))))))))...))	chr7:1577319-1577596(+)$1	1	109	149	13.4055
((....((((...(((......)))...)))).)))))..	chr11:378817-379113(+)$1	1	228	268	14.5786
(((((((((.((.(((...))).)).))).))))))).))	chr16:75272033-75272288(-)$1	1	182	222	13.5937
(((.((((((((((..(......)..)))))).)))).))	chr2:3289720-3290062(-)$1	1	178	218	13.2944
((((..(((((..(((......))).)))))..)))))))	chr14:100052942-100053249(-)$1	1	113	153	15.8760
(.(((((((((((.((......))))))))))))).).))	chr20:17661262-17661526(-)$1	1	20	60	18.0903
.((....(((...(.........)...)))....)).)))	chr7:100137273-100137526(+)$1	1	91	131	12.5100
.(.(((((....((((......))))))))).).)))..(	chr17:70553368-70553613(-)$1	1	65	105	13.5495

#PSSM
e : 0.16	= : 0.16	g : 0.14	[ : 0.14	h : 0.10	! : 0.04	f : 0.04	c : 0.04	i : 0.04	a : 0.04	# : 0.04	b : 0.02	% : 0.02	
g : 0.18	e : 0.16	= : 0.16	h : 0.10	d : 0.08	[ : 0.06	f : 0.04	c : 0.04	i : 0.04	# : 0.04	a : 0.04	! : 0.02	b : 0.02	
g : 0.22	e : 0.16	= : 0.16	h : 0.08	[ : 0.08	d : 0.08	f : 0.06	c : 0.04	i : 0.04	a : 0.02	# : 0.02	b : 0.02	
g : 0.22	= : 0.16	e : 0.12	[ : 0.10	d : 0.10	h : 0.08	c : 0.04	f : 0.04	i : 0.04	# : 0.04	a : 0.02	! : 0.02	
g : 0.22	= : 0.16	d : 0.12	h : 0.08	b : 0.06	c : 0.06	! : 0.06	e : 0.06	f : 0.04	i : 0.04	# : 0.04	[ : 0.02	a : 0.02	
g : 0.18	= : 0.16	[ : 0.10	! : 0.10	h : 0.08	b : 0.06	d : 0.06	c : 0.06	e : 0.06	i : 0.04	# : 0.04	a : 0.02	f : 0.02	
= : 0.18	g : 0.14	c : 0.10	h : 0.08	d : 0.08	! : 0.08	e : 0.08	" : 0.06	[ : 0.06	f : 0.04	b : 0.02	i : 0.02	a : 0.02	# : 0.02	
= : 0.18	c : 0.12	d : 0.10	! : 0.10	g : 0.10	h : 0.08	" : 0.06	f : 0.06	b : 0.06	i : 0.06	e : 0.04	[ : 0.02	
c : 0.14	! : 0.12	= : 0.10	f : 0.10	" : 0.08	d : 0.08	# : 0.08	i : 0.08	a : 0.06	g : 0.06	b : 0.04	h : 0.02	e : 0.02	
c : 0.22	! : 0.12	f : 0.12	# : 0.10	[ : 0.08	g : 0.06	d : 0.06	i : 0.06	= : 0.04	" : 0.04	e : 0.04	h : 0.02	b : 0.02	
c : 0.24	f : 0.12	# : 0.10	" : 0.10	! : 0.08	g : 0.06	e : 0.06	i : 0.06	b : 0.04	= : 0.04	d : 0.04	[ : 0.02	a : 0.02	
c : 0.24	f : 0.12	e : 0.10	# : 0.10	" : 0.10	[ : 0.08	i : 0.06	g : 0.04	b : 0.04	= : 0.04	! : 0.04	a : 0.02	
[ : 0.18	c : 0.14	f : 0.12	e : 0.10	d : 0.10	" : 0.08	! : 0.06	i : 0.06	g : 0.04	= : 0.04	b : 0.02	# : 0.02	a : 0.02	
c : 0.36	f : 0.10	[ : 0.10	e : 0.10	d : 0.10	i : 0.06	g : 0.04	b : 0.04	= : 0.02	" : 0.02	! : 0.02	a : 0.02	
c : 0.34	d : 0.12	b : 0.10	e : 0.08	[ : 0.08	a : 0.06	i : 0.06	g : 0.04	f : 0.04	= : 0.02	! : 0.02	r : 0.02	
c : 0.32	a : 0.12	d : 0.12	b : 0.08	e : 0.06	i : 0.06	g : 0.04	o : 0.04	[ : 0.04	= : 0.02	p : 0.02	f : 0.02	! : 0.02	r : 0.02	
o : 0.65	c : 0.08	n : 0.06	= : 0.02	b : 0.02	d : 0.02	m : 0.02	p : 0.02	f : 0.02	i : 0.02	l : 0.02	a : 0.02	r : 0.02	
o : 0.69	c : 0.06	n : 0.06	r : 0.04	m : 0.04	d : 0.02	p : 0.02	f : 0.02	[ : 0.02	l : 0.02	
o : 0.71	n : 0.06	m : 0.06	c : 0.04	r : 0.04	l : 0.04	p : 0.02	a : 0.02	
o : 0.71	n : 0.08	l : 0.06	m : 0.06	r : 0.04	p : 0.02	c : 0.02	
o : 0.71	n : 0.08	l : 0.06	r : 0.04	m : 0.04	b : 0.02	p : 0.02	c : 0.02	
o : 0.67	a : 0.06	b : 0.04	l : 0.04	r : 0.04	c : 0.04	d : 0.02	p : 0.02	m : 0.02	i : 0.02	n : 0.02	
c : 0.36	d : 0.12	a : 0.10	b : 0.06	] : 0.06	e : 0.06	o : 0.06	g : 0.04	r : 0.04	i : 0.04	4 : 0.02	n : 0.02	
c : 0.36	d : 0.14	] : 0.10	b : 0.08	e : 0.06	g : 0.04	f : 0.04	i : 0.04	a : 0.04	r : 0.02	4 : 0.02	o : 0.02	n : 0.02	
c : 0.36	d : 0.14	a : 0.08	e : 0.08	f : 0.06	g : 0.04	b : 0.04	i : 0.04	2 : 0.04	r : 0.02	4 : 0.02	] : 0.02	= : 0.02	3 : 0.02	
] : 0.30	3 : 0.14	d : 0.12	e : 0.08	2 : 0.06	f : 0.06	c : 0.06	g : 0.04	= : 0.04	i : 0.04	r : 0.02	4 : 0.02	
c : 0.26	3 : 0.16	f : 0.12	e : 0.12	= : 0.06	i : 0.06	g : 0.04	d : 0.04	b : 0.04	4 : 0.04	2 : 0.02	] : 0.02	
c : 0.26	3 : 0.16	f : 0.12	e : 0.08	4 : 0.08	b : 0.06	= : 0.06	i : 0.06	g : 0.04	d : 0.02	2 : 0.02	] : 0.02	
c : 0.28	f : 0.14	e : 0.10	4 : 0.10	d : 0.06	= : 0.06	2 : 0.06	i : 0.06	g : 0.04	3 : 0.04	] : 0.02	b : 0.02	
4 : 0.16	] : 0.16	f : 0.12	c : 0.10	e : 0.08	2 : 0.08	i : 0.08	d : 0.06	= : 0.06	3 : 0.04	h : 0.02	b : 0.02	
4 : 0.14	c : 0.14	= : 0.12	f : 0.10	e : 0.08	g : 0.08	b : 0.06	d : 0.06	i : 0.06	3 : 0.04	] : 0.04	2 : 0.04	h : 0.02	
= : 0.16	4 : 0.10	f : 0.10	g : 0.10	e : 0.08	c : 0.08	] : 0.08	d : 0.06	2 : 0.06	3 : 0.04	b : 0.04	i : 0.04	h : 0.02	a : 0.02	
= : 0.16	] : 0.14	g : 0.12	c : 0.12	4 : 0.08	2 : 0.08	e : 0.06	f : 0.06	i : 0.06	b : 0.02	h : 0.02	3 : 0.02	d : 0.02	a : 0.02	
= : 0.18	g : 0.16	a : 0.08	e : 0.08	f : 0.08	d : 0.08	b : 0.06	i : 0.06	c : 0.06	2 : 0.04	] : 0.04	h : 0.02	3 : 0.02	4 : 0.02	
= : 0.18	g : 0.16	] : 0.12	e : 0.10	c : 0.08	f : 0.06	d : 0.06	i : 0.06	b : 0.06	2 : 0.04	h : 0.02	a : 0.02	3 : 0.02	
g : 0.18	= : 0.16	e : 0.12	] : 0.10	h : 0.08	3 : 0.08	d : 0.06	f : 0.04	a : 0.04	i : 0.04	2 : 0.02	4 : 0.02	b : 0.02	c : 0.02	
g : 0.22	= : 0.16	e : 0.12	h : 0.08	a : 0.08	] : 0.08	d : 0.06	3 : 0.06	f : 0.04	i : 0.04	4 : 0.02	c : 0.02	
g : 0.14	e : 0.12	= : 0.12	2 : 0.10	] : 0.10	h : 0.06	f : 0.06	3 : 0.06	i : 0.04	a : 0.04	c : 0.02	B : 0.02	b : 0.02	6 : 0.02	4 : 0.02	d : 0.02	: : 0.02	
g : 0.14	= : 0.14	e : 0.12	2 : 0.10	d : 0.08	h : 0.06	f : 0.06	3 : 0.06	c : 0.04	4 : 0.04	: : 0.04	] : 0.02	B : 0.02	b : 0.02	i : 0.02	6 : 0.02	
g : 0.14	= : 0.14	d : 0.12	e : 0.10	h : 0.08	c : 0.08	] : 0.06	3 : 0.06	: : 0.04	i : 0.04	f : 0.04	} : 0.02	4 : 0.02	6 : 0.02	a : 0.02	

#score	754.9679991362248
#seq	49
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_transcript_m1_run2.txt

#BEAR
c[ccc[cccmmmmccc]ccccc	chr2:132249348-132249550(-)$1	202	44	66	12.0508
dddd!!cccmmmmccc22dddd	chr11:107955586-107955844(+)$1	258	206	228	14.6896
"""ddddbbmmmmbb22dddd3	chr7:99928310-99928541(-)$1	231	118	140	9.6480
dddd!!cccmmmmccc22dddd	chr7:148680793-148681041(+)$1	248	80	102	14.6896
dddd!!cccmmmmccc22dddd	chr20:23438136-23438352(-)$1	216	57	79	14.6896
cbb"""cccmmmmccc333bb]	chr2:42084381-42084592(-)$1	211	100	122	12.2664
Jdddd[cccmmmmccc]dddd:	chr9:19378773-19378978(-)$1	205	155	177	10.5174
gg####cccmmmmccc]ggggg	chr10:128609264-128609510(+)$1	246	69	91	11.8524
gg"""ddddmmmmdddd333gg	chr7:103151313-103151526(-)$1	213	18	40	10.2933
dddd[a[bbmmmmbb]a]dddd	chrX:153662604-153662837(+)$1	233	184	206	10.8296
dddd!!cccmmmmccc22dddd	chr20:16651190-16651395(-)$1	205	35	57	14.6896
dddd!!cccmmmmccc22dddd	chr14:21147528-21147764(+)$1	236	68	90	14.6896
dddd!!cccmmmmccc22dddd	chr20:16651195-16651427(-)$1	232	67	89	14.6896
iiiiiiiiimmmmiiiiiiiii	chr9:46141536-46141748(-)$1	212	101	123	9.0685
gg"""ddddmmmmdddd333gg	chr7:103151285-103151513(-)$1	228	5	27	10.2933
ggccc[cccmmmmccc333ccc	chr1:2210953-2211205(+)$1	252	126	148	12.9277
dddd!!cccmmmmccc22dddd	chr7:148680746-148680990(+)$1	244	127	149	14.6896
dddda[ccclllccc]a]dddd	chr9:19380100-19380329(-)$1	229	197	219	10.1890
ggg!!ddddmmmmdddd22ggg	chr1:113460460-113460704(-)$1	244	181	203	10.1387
ggggggcccmmmmccc]ggggg	chr16:81526376-81526625(+)$1	249	193	215	10.8545
dddd!!cccmmmmccc22dddd	chr20:23438122-23438336(-)$1	214	41	63	14.6896
cc[a"""bbmmmmbb4444a]c	chr2:130947941-130948155(+)$1	214	147	169	10.2919
dddd!!cccmmmmccc22dddd	chr12:42848480-42848703(+)$1	223	68	90	14.6896
ccc!!ddddmmmmdddd22ccc	chr19:6572888-6573107(-)$1	219	59	81	10.7246
[a"""ddddmmmmdddd]a]bb	chr7:29962254-29962543(-)$1	289	125	147	9.4626
[ccc[ddddmmmmdddd]ccc2	chr3:193373477-193373687(+)$1	210	173	195	10.0363
dddd!!cccmmmmccc22dddd	chr7:148680841-148681044(+)$1	203	32	54	14.6896
"""ddddbbmmmmbb22dddd3	chr7:99928301-99928510(-)$1	209	87	109	9.6480
!dddd[cccmmmmccc]dddd5	chr17:34171725-34172010(+)$1	285	42	64	11.8234
c[ccc[cccmmmmccc]ccccc	chr2:130940241-130940449(+)$1	208	49	71	12.0508
d[ccc[ccclllcccccc]ddd	chr1:236175118-236175352(-)$1	234	186	208	9.2992
dddd[ddddmmmmdddd]dddd	chr16:74356980-74357252(-)$1	272	198	220	11.2508
!ccc[cccooooooccc]ccc2	chrX:64905648-64905893(+)$1	245	43	65	8.2597
Jdddd[cccmmmmccc]dddd:	chr9:19378781-19378998(-)$1	217	175	197	10.5174
c[ccc[cccmmmmccc]ccccc	chr2:130940203-130940441(+)$1	238	87	109	12.0508
dddd!!cccmmmmccc22dddd	chr4:158689064-158689301(-)$1	237	62	84	14.6896
c[ccc[cccmmmmccc]ccccc	chr2:132249350-132249616(-)$1	266	110	132	12.0508
iiiiiiiiimmmmiiiiiiiii	chr9:46141519-46141736(-)$1	217	89	111	9.0685
cbb"""cccmmmmccc333bb]	chr2:42084392-42084603(-)$1	211	111	133	12.2664
dddd!!cccmmmmccc22dddd	chr12:42848504-42848722(+)$1	218	44	66	14.6896
[a[a[ddddmmmmddddaa]dd	chr19:13054536-13054787(+)$1	251	187	209	9.7166
Jdddd[cccmmmmccc]dddd:	chr9:19378759-19378973(-)$1	214	150	172	10.5174
dddd!!bboooooobb22dddd	chr17:43148771-43149015(+)$1	244	65	87	9.6156
dddd!!cccmmmmccc22dddd	chr14:21147564-21147769(+)$1	205	32	54	14.6896
ff####cccmmmmccc22ffff	chr4:154187975-154188196(-)$1	221	173	195	11.9000
[ccc"""bbmmmmbb22cccbb	chr20:4680623-4680876(+)$1	253	216	238	9.8743
dddd!!cccmmmmccc22dddd	chr14:21147525-21147728(+)$1	203	71	93	14.6896
ccc!!ddddmmmmdddd22ccc	chr19:6572871-6573088(-)$1	217	40	62	10.7246
dddd!!cccmmmmccc333ddd	chr9:116971664-116971888(+)$1	224	126	148	14.5305

#otherMatches

#Seq PSSM
GAGCCCCAGGACCCUGCGGCCG	chr2:132249348-132249550(-)$1	202	44	66	12.0508
cucugagguguauaccaaagag	chr11:107955586-107955844(+)$1	258	206	228	14.6896
aacugcuucacuugacuagcAU	chr7:99928310-99928541(-)$1	231	118	140	9.6480
aacuaauugaucacaaccaguu	chr7:148680793-148681041(+)$1	248	80	102	14.6896
aacuuauugaucacaaacaguu	chr20:23438136-23438352(-)$1	216	57	79	14.6896
uguuuacaaauaauugaucaca	chr2:42084381-42084592(-)$1	211	100	122	12.2664
AGUAAGGGGCAUUCCUGUUACA	chr9:19378773-19378978(-)$1	205	155	177	10.5174
cucuuaggugugcacccagaag	chr10:128609264-128609510(+)$1	246	69	91	11.8524
UGCUUCAAGUAUUUUUGUCACA	chr7:103151313-103151526(-)$1	213	18	40	10.2933
CCAGGCAAGGGCACUAGGCUGG	chrX:153662604-153662837(+)$1	233	184	206	10.8296
aacuaauugaucacaaccaguu	chr20:16651190-16651395(-)$1	205	35	57	14.6896
aacuaauugaucacaagcaguu	chr14:21147528-21147764(+)$1	236	68	90	14.6896
aacuaauugaucacaaccaguu	chr20:16651195-16651427(-)$1	232	67	89	14.6896
aauugauuguucacagucaguu	chr9:46141536-46141748(-)$1	212	101	123	9.0685
UGCUUCAAGUAUUUUUGUCACA	chr7:103151285-103151513(-)$1	228	5	27	10.2933
GGGGGAGAGUGUUCUCCUGCCC	chr1:2210953-2211205(+)$1	252	126	148	12.9277
aacuaauugaucacaaccaguu	chr7:148680746-148680990(+)$1	244	127	149	14.6896
GAACGCGGCAUUGCCUCAGUUC	chr9:19380100-19380329(-)$1	229	197	219	10.1890
UUCGGUAUCUUUGGAUGGAGAG	chr1:113460460-113460704(-)$1	244	181	203	10.1387
AUGCCCCUUUAGUAGGAGGGCA	chr16:81526376-81526625(+)$1	249	193	215	10.8545
aacuuauugaucacaaacaguu	chr20:23438122-23438336(-)$1	214	41	63	14.6896
GAACGCAGCAGCCGCGAAGGAU	chr2:130947941-130948155(+)$1	214	147	169	10.2919
aacuaauugaucacaaccaguu	chr12:42848480-42848703(+)$1	223	68	90	14.6896
uguuuacaacuaauuguucaca	chr19:6572888-6573107(-)$1	219	59	81	10.7246
GAUAUAGAAGCAUUUCUCUGCA	chr7:29962254-29962543(-)$1	289	125	147	9.4626
UCAAUGUUAAAAGUAAUUUUGU	chr3:193373477-193373687(+)$1	210	173	195	10.0363
aacuaauugaucacaaccaguu	chr7:148680841-148681044(+)$1	203	32	54	14.6896
aacugcuucacuugacuagcAU	chr7:99928301-99928510(-)$1	209	87	109	9.6480
gaccgagguggaggcuauggug	chr17:34171725-34172010(+)$1	285	42	64	11.8234
GAGCCCCAGGACCCUGCGGCCG	chr2:130940241-130940449(+)$1	208	49	71	12.0508
GAGCACAUGGCCCAUUGCCCUG	chr1:236175118-236175352(-)$1	234	186	208	9.2992
GGGUggccaggcaugguggcuc	chr16:74356980-74357252(-)$1	272	198	220	11.2508
cugccuugaccucccaaagugu	chrX:64905648-64905893(+)$1	245	43	65	8.2597
AGUAAGGGGCAUUCCUGUUACA	chr9:19378781-19378998(-)$1	217	175	197	10.5174
GAGCCCCAGGACCCUGCGGCCG	chr2:130940203-130940441(+)$1	238	87	109	12.0508
aacuaauugaucacaaccaguu	chr4:158689064-158689301(-)$1	237	62	84	14.6896
GAGCCCCAGGACCCUGCGGCCG	chr2:132249350-132249616(-)$1	266	110	132	12.0508
aauugauuguucacagucaguu	chr9:46141519-46141736(-)$1	217	89	111	9.0685
uguuuacaaauaauugaucaca	chr2:42084392-42084603(-)$1	211	111	133	12.2664
aacuaauugaucacaaccaguu	chr12:42848504-42848722(+)$1	218	44	66	14.6896
GUAGAGAGGCCUGCCUCCAGGG	chr19:13054536-13054787(+)$1	251	187	209	9.7166
AGUAAGGGGCAUUCCUGUUACA	chr9:19378759-19378973(-)$1	214	150	172	10.5174
gacuaauuugucauaaccaguu	chr17:43148771-43149015(+)$1	244	65	87	9.6156
aacuaauugaucacaagcaguu	chr14:21147564-21147769(+)$1	205	32	54	14.6896
GUAUGAGUAUAGUUACAAACAU	chr4:154187975-154188196(-)$1	221	173	195	11.9000
AGCCGUUGCUAAUGCCAGGCCA	chr20:4680623-4680876(+)$1	253	216	238	9.8743
aacuaauugaucacaagcaguu	chr14:21147525-21147728(+)$1	203	71	93	14.6896
uguuuacaacuaauuguucaca	chr19:6572871-6573088(-)$1	217	40	62	10.7246
CCUCAAGGCCUAUGUCAUCGAG	chr9:116971664-116971888(+)$1	224	126	148	14.5305

#DB
(.(((.(((....))).)))))	chr2:132249348-132249550(-)$1	1	44	66	12.0508
((((..(((....)))..))))	chr11:107955586-107955844(+)$1	1	206	228	14.6896
...((((((....))..)))).	chr7:99928310-99928541(-)$1	1	118	140	9.6480
((((..(((....)))..))))	chr7:148680793-148681041(+)$1	1	80	102	14.6896
((((..(((....)))..))))	chr20:23438136-23438352(-)$1	1	57	79	14.6896
(((...(((....)))...)).	chr2:42084381-42084592(-)$1	1	100	122	12.2664
)((((.(((....))).)))).	chr9:19378773-19378978(-)$1	1	155	177	10.5174
((....(((....))).)))))	chr10:128609264-128609510(+)$1	1	69	91	11.8524
((...((((....))))...))	chr7:103151313-103151526(-)$1	1	18	40	10.2933
((((.(.((....)).).))))	chrX:153662604-153662837(+)$1	1	184	206	10.8296
((((..(((....)))..))))	chr20:16651190-16651395(-)$1	1	35	57	14.6896
((((..(((....)))..))))	chr14:21147528-21147764(+)$1	1	68	90	14.6896
((((..(((....)))..))))	chr20:16651195-16651427(-)$1	1	67	89	14.6896
(((((((((....)))))))))	chr9:46141536-46141748(-)$1	1	101	123	9.0685
((...((((....))))...))	chr7:103151285-103151513(-)$1	1	5	27	10.2933
(((((.(((....)))...)))	chr1:2210953-2211205(+)$1	1	126	148	12.9277
((((..(((....)))..))))	chr7:148680746-148680990(+)$1	1	127	149	14.6896
(((((.(((...))).).))))	chr9:19380100-19380329(-)$1	1	197	219	10.1890
(((..((((....))))..)))	chr1:113460460-113460704(-)$1	1	181	203	10.1387
(((((((((....))).)))))	chr16:81526376-81526625(+)$1	1	193	215	10.8545
((((..(((....)))..))))	chr20:23438122-23438336(-)$1	1	41	63	14.6896
((.(...((....))....).)	chr2:130947941-130948155(+)$1	1	147	169	10.2919
((((..(((....)))..))))	chr12:42848480-42848703(+)$1	1	68	90	14.6896
(((..((((....))))..)))	chr19:6572888-6573107(-)$1	1	59	81	10.7246
.(...((((....)))).).))	chr7:29962254-29962543(-)$1	1	125	147	9.4626
.(((.((((....)))).))).	chr3:193373477-193373687(+)$1	1	173	195	10.0363
((((..(((....)))..))))	chr7:148680841-148681044(+)$1	1	32	54	14.6896
...((((((....))..)))).	chr7:99928301-99928510(-)$1	1	87	109	9.6480
.((((.(((....))).)))).	chr17:34171725-34172010(+)$1	1	42	64	11.8234
(.(((.(((....))).)))))	chr2:130940241-130940449(+)$1	1	49	71	12.0508
(.(((.(((...)))))).)))	chr1:236175118-236175352(-)$1	1	186	208	9.2992
((((.((((....)))).))))	chr16:74356980-74357252(-)$1	1	198	220	11.2508
.(((.(((......))).))).	chrX:64905648-64905893(+)$1	1	43	65	8.2597
)((((.(((....))).)))).	chr9:19378781-19378998(-)$1	1	175	197	10.5174
(.(((.(((....))).)))))	chr2:130940203-130940441(+)$1	1	87	109	12.0508
((((..(((....)))..))))	chr4:158689064-158689301(-)$1	1	62	84	14.6896
(.(((.(((....))).)))))	chr2:132249350-132249616(-)$1	1	110	132	12.0508
(((((((((....)))))))))	chr9:46141519-46141736(-)$1	1	89	111	9.0685
(((...(((....)))...)).	chr2:42084392-42084603(-)$1	1	111	133	12.2664
((((..(((....)))..))))	chr12:42848504-42848722(+)$1	1	44	66	14.6896
.(.(.((((....)))))).))	chr19:13054536-13054787(+)$1	1	187	209	9.7166
)((((.(((....))).)))).	chr9:19378759-19378973(-)$1	1	150	172	10.5174
((((..((......))..))))	chr17:43148771-43149015(+)$1	1	65	87	9.6156
((((..(((....)))..))))	chr14:21147564-21147769(+)$1	1	32	54	14.6896
((....(((....)))..))))	chr4:154187975-154188196(-)$1	1	173	195	11.9000
.(((...((....))..)))))	chr20:4680623-4680876(+)$1	1	216	238	9.8743
((((..(((....)))..))))	chr14:21147525-21147728(+)$1	1	71	93	14.6896
(((..((((....))))..)))	chr19:6572871-6573088(-)$1	1	40	62	10.7246
((((..(((....)))...)))	chr9:116971664-116971888(+)$1	1	126	148	14.5305

#PSSM
d : 0.40	c : 0.18	g : 0.12	[ : 0.08	J : 0.06	" : 0.04	i : 0.04	! : 0.04	f : 0.02	
d : 0.46	g : 0.12	c : 0.12	[ : 0.10	" : 0.04	b : 0.04	i : 0.04	a : 0.04	f : 0.02	
d : 0.46	c : 0.22	" : 0.10	b : 0.04	# : 0.04	i : 0.04	g : 0.04	[ : 0.04	
d : 0.51	c : 0.18	" : 0.10	! : 0.06	# : 0.04	i : 0.04	a : 0.04	g : 0.02	
! : 0.38	" : 0.14	c : 0.12	d : 0.12	[ : 0.10	# : 0.04	i : 0.04	a : 0.02	g : 0.02	
! : 0.32	[ : 0.22	d : 0.22	" : 0.08	# : 0.04	i : 0.04	a : 0.02	g : 0.02	c : 0.02	
c : 0.65	d : 0.22	i : 0.04	" : 0.04	[ : 0.02	b : 0.02	
c : 0.65	d : 0.18	b : 0.12	i : 0.04	
c : 0.63	d : 0.18	b : 0.10	i : 0.04	o : 0.04	
m : 0.91	l : 0.04	o : 0.04	
m : 0.91	l : 0.04	o : 0.04	
m : 0.91	l : 0.04	o : 0.04	
m : 0.91	c : 0.04	o : 0.04	
c : 0.63	d : 0.18	b : 0.10	i : 0.04	o : 0.04	
c : 0.65	d : 0.18	b : 0.12	i : 0.04	
c : 0.63	d : 0.18	2 : 0.06	] : 0.04	i : 0.04	4 : 0.02	b : 0.02	
2 : 0.38	] : 0.20	d : 0.18	3 : 0.08	a : 0.04	i : 0.04	c : 0.04	4 : 0.02	
2 : 0.38	c : 0.12	d : 0.12	3 : 0.12	] : 0.12	g : 0.04	i : 0.04	4 : 0.02	a : 0.02	
d : 0.48	c : 0.14	3 : 0.12	2 : 0.06	g : 0.04	i : 0.04	a : 0.04	4 : 0.02	] : 0.02	f : 0.02	
d : 0.53	c : 0.20	g : 0.06	b : 0.04	3 : 0.04	i : 0.04	] : 0.04	a : 0.02	f : 0.02	
d : 0.55	c : 0.18	g : 0.10	b : 0.08	i : 0.04	] : 0.02	f : 0.02	
d : 0.42	c : 0.16	g : 0.10	: : 0.06	3 : 0.04	] : 0.04	i : 0.04	b : 0.04	2 : 0.04	5 : 0.02	f : 0.02	

#score	582.2659283634738
#seq	49
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_transcript_m2_run2.txt

#BEAR
ddddvvvvvvvvvvvvvdddd33	chr10:119042068-119042380(-)$1	312	185	208	22.6300
!dddduuuuuuuuuuuudddd22	chr14:62214693-62214978(+)$1	285	191	214	22.6823
fffffftttttttttttffffff	chr7:103112561-103112786(-)$1	225	126	149	22.3401
eeeeettttttttttteeeee:=	chr16:46836114-46836393(-)$1	279	91	114	20.9356
ddcccwwwwwwwwwwwwwwccc]	chr20:10619259-10619504(-)$1	245	23	46	21.5981
hhhhhwwwwwwwwwwwwwwhhhh	chr8:121549234-121549481(-)$1	247	90	113	21.1472
ggggggtttttttttttgggggg	chr12:3392752-3393062(+)$1	310	191	214	23.4351
ggggguuuuuuuuuuuugggggg	chrX:102612844-102613206(+)$1	362	200	223	24.4399
fffffftttttttttttffffff	chr4:13369387-13369655(-)$1	268	13	36	22.3401
dddwwwwwwwwwwwwwwddddff	chr2:85545086-85545336(-)$1	250	89	112	20.8913
fffffuuuuuuuuuuuuffffff	chr4:141302444-141302713(+)$1	269	53	76	23.2132
ggggvvvvvvvvvvvvvgggggg	chr15:78791917-78792185(+)$1	268	200	223	24.2026
g[cccuuuuuuuuuuuucccggg	chr13:108882516-108882791(+)$1	275	141	164	24.2034
ggggguuuuuuuuuuuugggggg	chr11:65195657-65195911(+)$1	254	99	122	24.4399
hhhhhuuuuuuuuuuuuhhhhhh	chr10:81074152-81074508(+)$1	356	287	310	22.6106
gg[bbuuuuuuuuuuuubb22gg	chr3:172115937-172116166(+)$1	229	99	122	22.3497
ggggggtttttttttttgggggg	chr2:70316089-70316379(+)$1	290	102	125	23.4351
ffddddtttttttttttdddd]f	chr3:30699784-30700052(+)$1	268	189	212	22.1472
ffffauuuuuuuuuuuua]ffff	chr12:80168049-80168326(-)$1	277	26	49	23.4225
bbddddtttttttttttdddd]b	chr2:48605439-48605689(+)$1	250	223	246	21.2507
ggggguuuuuuuuuuuugggggg	chr20:34636528-34636774(-)$1	246	29	52	24.4399
#eeeeettttttttttteeeeed	chr11:65202095-65202342(+)$1	247	165	188	22.1942
fffffftttttttttttffffff	chr6:163994241-163994508(+)$1	267	23	46	22.3401
ggggguuuuuuuuuuuugggggg	chr11:65198474-65198683(+)$1	209	109	132	24.4399
iiiiiuuuuuuuuuuuuiiiiii	chr6:119500769-119501003(-)$1	234	17	40	24.1296
ggggvvvvvvvvvvvvvgggggg	chr3:142525209-142525468(+)$1	259	170	193	24.2026
eeeeevvvvvvvvvvvvveeeee	chr8:103839509-103839756(-)$1	247	163	186	23.3102
fffffuuuuuuuuuuuuffffff	chr2:54045368-54045629(+)$1	261	59	82	23.2132
eeeewwwwwwwwwwwwwweeeee	chr4:13570307-13570585(-)$1	278	119	142	21.8707
fffffuuuuuuuuuuuuffffff	chr9:80944748-80945063(+)$1	315	28	51	23.2132
d[cccvvvvvvvvvvvvvccc]d	chr10:124191616-124191896(+)$1	280	98	121	23.4844
cccwwwwwwwwwwwwwwccc]gg	chr12:26571969-26572245(-)$1	276	186	209	21.7877
eeeyyyyyyyyyyyyyyyyeeee	chr10:111895120-111895398(+)$1	278	60	83	19.6335
hhhhhvvvvvvvvvvvvvhhhhh	chr12:1018720-1019011(+)$1	291	208	231	22.7889
"""ccctttttttttttccc333	chr5:110464522-110464804(+)$1	282	89	112	22.4981
hhhhhuuuuuuuuuuuuhhhhhh	chr17:66527616-66527906(+)$1	290	265	288	22.6106
!ddddvvvvvvvvvvvvvdddd2	chr5:74657183-74657419(+)$1	236	28	51	22.6629
[dddduuuuuuuuuuuudddd]c	chr14:35870623-35870936(-)$1	313	4	27	23.0729
eeeeevvvvvvvvvvvvveeeee	chr17:20778636-20778929(+)$1	293	29	52	23.3102
eeeeettttttttttteeeee:b	chr1:120455011-120455298(-)$1	287	212	235	20.5749
ggggggtttttttttttgggggg	chr2:70316035-70316288(+)$1	253	156	179	23.4351
iiiiivvvvvvvvvvvvviiiii	chr6:153291662-153291941(-)$1	279	192	215	24.0861
ggggvvvvvvvvvvvvvgggggg	chr1:92146436-92146719(-)$1	283	66	89	24.2026
ffyyyyyyyyyyyyyyyyfffff	chr5:14509413-14509678(+)$1	265	141	164	19.5366
hhhhhwwwwwwwwwwwwwwhhhh	chrX:106039396-106039657(+)$1	261	44	67	21.1472
!eeeeettttttttttteeeee]	chr6:11576240-11576542(+)$1	302	229	252	22.6492
ggggguuuuuuuuuuuugggggg	chr1:95362599-95362905(-)$1	306	73	96	24.4399
ggggvvvvvvvvvvvvvgggggg	chr5:10433806-10434049(+)$1	243	142	165	24.2026
fffffftttttttttttffffff	chr14:53109952-53110281(-)$1	329	258	281	22.3401
ggggguuuuuuuuuuuugggggg	chr16:18803037-18803254(-)$1	217	8	31	24.4399
ddcccvvvvvvvvvvvvvccc]d	chr11:65202388-65202640(+)$1	252	79	102	23.2936
$$ddddtttttttttttdddd77	chr11:117038756-117039048(+)$1	292	120	143	19.9982
hhhhhuuuuuuuuuuuuhhhhhh	chr6:128290281-128290537(-)$1	256	186	209	22.6106
!!ddddtttttttttttdddd22	chr5:132216185-132216443(-)$1	258	173	196	21.9291
eeeevvvvvvvvvvvvveeeeec	chr3:73117576-73117826(+)$1	250	81	104	23.1461
[a[bbtttttttttttbb]aggg	chr11:110101159-110101430(-)$1	271	26	49	21.4972
eeeeevvvvvvvvvvvvveeeee	chr1:111489818-111490077(-)$1	259	29	52	23.3102
iiiiiuuuuuuuuuuuuiiiiii	chr18:71920455-71920710(-)$1	255	182	205	24.1296
fffffvvvvvvvvvvvvvfffff	chr4:159045979-159046210(-)$1	231	59	82	23.2514
!!cccvvvvvvvvvvvvvccc22	chr4:57801087-57801348(+)$1	261	85	108	23.5117

#otherMatches

#Seq PSSM
CAGCUUUAGUCUGUUAUGCUGAU	chr10:119042068-119042380(-)$1	312	185	208	22.6300
ACAAAUUUUUCAUUCCUUUUGCU	chr14:62214693-62214978(+)$1	285	191	214	22.6823
AUAUACUCCUUAAAAAUGUAUGU	chr7:103112561-103112786(-)$1	225	126	149	22.3401
CUUUAUUUUUAUUACUUAAGGUA	chr16:46836114-46836393(-)$1	279	91	114	20.9356
AUCAUUCCUUUUUAUUUAUAUGU	chr20:10619259-10619504(-)$1	245	23	46	21.5981
UUUUUUUUUUUAAUGCUUUAGAA	chr8:121549234-121549481(-)$1	247	90	113	21.1472
CUGUCCAGUCUCAAUCAGGACAG	chr12:3392752-3393062(+)$1	310	191	214	23.4351
auguaucucuuguuaucugcauc	chrX:102612844-102613206(+)$1	362	200	223	24.4399
UAGAAAUAUUUUUUCAUUUUUUA	chr4:13369387-13369655(-)$1	268	13	36	22.3401
CAGUGCAUAAUGUUUUUCUGAGC	chr2:85545086-85545336(-)$1	250	89	112	20.8913
GAAACUUAAAGAUGAAUGUUUUA	chr4:141302444-141302713(+)$1	269	53	76	23.2132
AGGUUGAAAGAUGAAAUGCCUGU	chr15:78791917-78792185(+)$1	268	200	223	24.2026
UGUCUGUACCUGUCUGAAGAGUG	chr13:108882516-108882791(+)$1	275	141	164	24.2034
GAGCCAGUAUUGGUUGAGGCUCU	chr11:65195657-65195911(+)$1	254	99	122	24.4399
UUUUUUUAAACAAAAACAAAAAA	chr10:81074152-81074508(+)$1	356	287	310	22.6106
GCUGCUUUAACUUGUUUGUUUGU	chr3:172115937-172116166(+)$1	229	99	122	22.3497
AUUUCUGUUUGUCGAUAAGAAAU	chr2:70316089-70316379(+)$1	290	102	125	23.4351
UUGAGUAACCACUUCUGACUCAA	chr3:30699784-30700052(+)$1	268	189	212	22.1472
CUGUCUCCUUAACCACUGAACAG	chr12:80168049-80168326(-)$1	277	26	49	23.4225
CUUUGCCAGCAAUUUAAGCAACA	chr2:48605439-48605689(+)$1	250	223	246	21.2507
GCAUAUUUUGUACACUUUGUGUU	chr20:34636528-34636774(-)$1	246	29	52	24.4399
uguuguucauauccucuacgacg	chr11:65202095-65202342(+)$1	247	165	188	22.1942
UCAGUAUUAUCAUUCUUUAUUGA	chr6:163994241-163994508(+)$1	267	23	46	22.3401
uucauaucaguuaaaucaugaag	chr11:65198474-65198683(+)$1	209	109	132	24.4399
UAAAAAGACAUUUUAUAUUUUAU	chr6:119500769-119501003(-)$1	234	17	40	24.1296
CAGUUAUAAAUGGACACAUUGCC	chr3:142525209-142525468(+)$1	259	170	193	24.2026
UUUUAAUUCUUUUCUUACUAAAA	chr8:103839509-103839756(-)$1	247	163	186	23.3102
UAUUGAAAGUUUUUAAAUAAUAG	chr2:54045368-54045629(+)$1	261	59	82	23.2132
GGUUUUUUUUUUUAUUUUGACUC	chr4:13570307-13570585(-)$1	278	119	142	21.8707
UUACCAUUCUUUCCAUAGGUAGA	chr9:80944748-80945063(+)$1	315	28	51	23.2132
UUUGCUGCAUUUUUUUCCGUAUA	chr10:124191616-124191896(+)$1	280	98	121	23.4844
GCCUUUCUCUAUCACGUGGCGUA	chr12:26571969-26572245(-)$1	276	186	209	21.7877
GCCUCUAUUUACUUGCUUUGGCA	chr10:111895120-111895398(+)$1	278	60	83	19.6335
GUGGAAGGAAAUCGUAGGUCCAU	chr12:1018720-1019011(+)$1	291	208	231	22.7889
UAAUAGUUUUAACUCUCCUAGAU	chr5:110464522-110464804(+)$1	282	89	112	22.4981
UUGAGUCUUAACUGUAUUUCAGU	chr17:66527616-66527906(+)$1	290	265	288	22.6106
UCAAGAAAUAAAAAUCAACUUGU	chr5:74657183-74657419(+)$1	236	28	51	22.6629
CCACAUUUUAUAUUUAUUGUGCU	chr14:35870623-35870936(-)$1	313	4	27	23.0729
gcugauuuauuauuuuacucagu	chr17:20778636-20778929(+)$1	293	29	52	23.3102
GAUGCUCAAAUCCAUUGCAUCCU	chr1:120455011-120455298(-)$1	287	212	235	20.5749
AUUUCUGUUUGUCGAUAAGAAAU	chr2:70316035-70316288(+)$1	253	156	179	23.4351
GUAAAUAUUUCUGUAUUUUUUAU	chr6:153291662-153291941(-)$1	279	192	215	24.0861
GCAGUCUUUUGUUAUUUCUGCAG	chr1:92146436-92146719(-)$1	283	66	89	24.2026
CUUUUCGUGAAAUUUGUUGGUUU	chr5:14509413-14509678(+)$1	265	141	164	19.5366
UUUAAGUUAAUAGAAAAGAUUAA	chrX:106039396-106039657(+)$1	261	44	67	21.1472
AUACUUUUCACCAACUUAAGUAA	chr6:11576240-11576542(+)$1	302	229	252	22.6492
GAAAUUUACAUAUCAAUGUUUCU	chr1:95362599-95362905(-)$1	306	73	96	24.4399
AUUCUGCUGUUCUCCCUGGAUCU	chr5:10433806-10434049(+)$1	243	142	165	24.2026
AUUCAUAUAUGAUAAAAGUGAAU	chr14:53109952-53110281(-)$1	329	258	281	22.3401
UGUUGUUUUCUCCUCUUUAAUAU	chr16:18803037-18803254(-)$1	217	8	31	24.4399
agguauaauuuuuuaaauugcUU	chr11:65202388-65202640(+)$1	252	79	102	23.2936
AGAUUCUUAUGUAUACUGAAUAU	chr11:117038756-117039048(+)$1	292	120	143	19.9982
UUAAGCAUCAUUUAAAUUUUAAA	chr6:128290281-128290537(-)$1	256	186	209	22.6106
UGGUUCGUCUAAAAUAAGGACAU	chr5:132216185-132216443(-)$1	258	173	196	21.9291
UUGAUUAUUAGAUAAAUUUAACC	chr3:73117576-73117826(+)$1	250	81	104	23.1461
ACUGGUAUACUAUCAUCCUGGAG	chr11:110101159-110101430(-)$1	271	26	49	21.4972
CAUUCAAACAUUUCUCAAGAAUG	chr1:111489818-111490077(-)$1	259	29	52	23.3102
CACCGUGUUUGCCUGUUUGGUGU	chr18:71920455-71920710(-)$1	255	182	205	24.1296
UAUAACUUCAUAACAAACUUAUA	chr4:159045979-159046210(-)$1	231	59	82	23.2514
GCauuuuuuuuuuuuuuuaauaa	chr4:57801087-57801348(+)$1	261	85	108	23.5117

#DB
((((.............))))..	chr10:119042068-119042380(-)$1	1	185	208	22.6300
.((((............))))..	chr14:62214693-62214978(+)$1	1	191	214	22.6823
((((((...........))))))	chr7:103112561-103112786(-)$1	1	126	149	22.3401
(((((...........))))).(	chr16:46836114-46836393(-)$1	1	91	114	20.9356
(((((..............))).	chr20:10619259-10619504(-)$1	1	23	46	21.5981
(((((..............))))	chr8:121549234-121549481(-)$1	1	90	113	21.1472
((((((...........))))))	chr12:3392752-3393062(+)$1	1	191	214	23.4351
(((((............))))))	chrX:102612844-102613206(+)$1	1	200	223	24.4399
((((((...........))))))	chr4:13369387-13369655(-)$1	1	13	36	22.3401
(((..............))))))	chr2:85545086-85545336(-)$1	1	89	112	20.8913
(((((............))))))	chr4:141302444-141302713(+)$1	1	53	76	23.2132
((((.............))))))	chr15:78791917-78792185(+)$1	1	200	223	24.2026
(.(((............))))))	chr13:108882516-108882791(+)$1	1	141	164	24.2034
(((((............))))))	chr11:65195657-65195911(+)$1	1	99	122	24.4399
(((((............))))))	chr10:81074152-81074508(+)$1	1	287	310	22.6106
((.((............))..))	chr3:172115937-172116166(+)$1	1	99	122	22.3497
((((((...........))))))	chr2:70316089-70316379(+)$1	1	102	125	23.4351
((((((...........)))).)	chr3:30699784-30700052(+)$1	1	189	212	22.1472
(((((............).))))	chr12:80168049-80168326(-)$1	1	26	49	23.4225
((((((...........)))).)	chr2:48605439-48605689(+)$1	1	223	246	21.2507
(((((............))))))	chr20:34636528-34636774(-)$1	1	29	52	24.4399
.(((((...........))))))	chr11:65202095-65202342(+)$1	1	165	188	22.1942
((((((...........))))))	chr6:163994241-163994508(+)$1	1	23	46	22.3401
(((((............))))))	chr11:65198474-65198683(+)$1	1	109	132	24.4399
(((((............))))))	chr6:119500769-119501003(-)$1	1	17	40	24.1296
((((.............))))))	chr3:142525209-142525468(+)$1	1	170	193	24.2026
(((((.............)))))	chr8:103839509-103839756(-)$1	1	163	186	23.3102
(((((............))))))	chr2:54045368-54045629(+)$1	1	59	82	23.2132
((((..............)))))	chr4:13570307-13570585(-)$1	1	119	142	21.8707
(((((............))))))	chr9:80944748-80945063(+)$1	1	28	51	23.2132
(.(((.............))).)	chr10:124191616-124191896(+)$1	1	98	121	23.4844
(((..............))).))	chr12:26571969-26572245(-)$1	1	186	209	21.7877
(((................))))	chr10:111895120-111895398(+)$1	1	60	83	19.6335
(((((.............)))))	chr12:1018720-1019011(+)$1	1	208	231	22.7889
...(((...........)))...	chr5:110464522-110464804(+)$1	1	89	112	22.4981
(((((............))))))	chr17:66527616-66527906(+)$1	1	265	288	22.6106
.((((.............)))).	chr5:74657183-74657419(+)$1	1	28	51	22.6629
.((((............)))).)	chr14:35870623-35870936(-)$1	1	4	27	23.0729
(((((.............)))))	chr17:20778636-20778929(+)$1	1	29	52	23.3102
(((((...........))))).(	chr1:120455011-120455298(-)$1	1	212	235	20.5749
((((((...........))))))	chr2:70316035-70316288(+)$1	1	156	179	23.4351
(((((.............)))))	chr6:153291662-153291941(-)$1	1	192	215	24.0861
((((.............))))))	chr1:92146436-92146719(-)$1	1	66	89	24.2026
((................)))))	chr5:14509413-14509678(+)$1	1	141	164	19.5366
(((((..............))))	chrX:106039396-106039657(+)$1	1	44	67	21.1472
.(((((...........))))).	chr6:11576240-11576542(+)$1	1	229	252	22.6492
(((((............))))))	chr1:95362599-95362905(-)$1	1	73	96	24.4399
((((.............))))))	chr5:10433806-10434049(+)$1	1	142	165	24.2026
((((((...........))))))	chr14:53109952-53110281(-)$1	1	258	281	22.3401
(((((............))))))	chr16:18803037-18803254(-)$1	1	8	31	24.4399
(((((.............))).)	chr11:65202388-65202640(+)$1	1	79	102	23.2936
..((((...........))))..	chr11:117038756-117039048(+)$1	1	120	143	19.9982
(((((............))))))	chr6:128290281-128290537(-)$1	1	186	209	22.6106
..((((...........))))..	chr5:132216185-132216443(-)$1	1	173	196	21.9291
((((.............)))))(	chr3:73117576-73117826(+)$1	1	81	104	23.1461
.(.((...........)).))))	chr11:110101159-110101430(-)$1	1	26	49	21.4972
(((((.............)))))	chr1:111489818-111490077(-)$1	1	29	52	23.3102
(((((............))))))	chr18:71920455-71920710(-)$1	1	182	205	24.1296
(((((.............)))))	chr4:159045979-159046210(-)$1	1	59	82	23.2514
..(((.............)))..	chr4:57801087-57801348(+)$1	1	85	108	23.5117

#PSSM
g : 0.24	f : 0.18	e : 0.13	h : 0.09	d : 0.08	! : 0.08	i : 0.05	[ : 0.03	b : 0.01	# : 0.01	c : 0.01	" : 0.01	$ : 0.01	
g : 0.23	f : 0.18	e : 0.16	d : 0.11	h : 0.09	i : 0.05	[ : 0.03	! : 0.03	b : 0.01	c : 0.01	" : 0.01	$ : 0.01	a : 0.01	
g : 0.21	e : 0.16	d : 0.15	f : 0.15	c : 0.09	h : 0.09	i : 0.05	[ : 0.03	" : 0.01	y : 0.01	
g : 0.21	f : 0.15	e : 0.15	d : 0.13	c : 0.09	h : 0.09	i : 0.05	w : 0.03	b : 0.03	y : 0.03	
g : 0.15	f : 0.13	d : 0.11	e : 0.11	v : 0.09	c : 0.09	h : 0.09	w : 0.05	i : 0.05	b : 0.03	y : 0.03	a : 0.01	
u : 0.31	v : 0.26	w : 0.09	f : 0.06	d : 0.06	t : 0.05	g : 0.05	e : 0.03	y : 0.03	c : 0.01	
u : 0.31	t : 0.28	v : 0.26	w : 0.09	y : 0.03	
u : 0.31	t : 0.28	v : 0.26	w : 0.09	y : 0.03	
u : 0.31	t : 0.28	v : 0.26	w : 0.09	y : 0.03	
u : 0.31	t : 0.28	v : 0.26	w : 0.09	y : 0.03	
u : 0.31	t : 0.28	v : 0.26	w : 0.09	y : 0.03	
u : 0.31	t : 0.28	v : 0.26	w : 0.09	y : 0.03	
u : 0.31	t : 0.28	v : 0.26	w : 0.09	y : 0.03	
u : 0.31	t : 0.28	v : 0.26	w : 0.09	y : 0.03	
u : 0.31	t : 0.28	v : 0.26	w : 0.09	y : 0.03	
u : 0.31	t : 0.28	v : 0.26	w : 0.09	y : 0.03	
u : 0.31	v : 0.26	t : 0.23	w : 0.09	e : 0.03	y : 0.03	b : 0.01	
g : 0.21	v : 0.16	d : 0.13	f : 0.11	e : 0.08	w : 0.06	c : 0.05	h : 0.05	b : 0.03	i : 0.03	y : 0.03	a : 0.01	
g : 0.21	d : 0.15	f : 0.15	e : 0.15	c : 0.09	h : 0.06	w : 0.05	i : 0.05	] : 0.03	b : 0.01	y : 0.01	
g : 0.21	f : 0.16	e : 0.16	d : 0.15	c : 0.11	h : 0.09	i : 0.05	2 : 0.01	a : 0.01	
g : 0.24	f : 0.16	e : 0.16	d : 0.15	h : 0.09	c : 0.06	i : 0.05	2 : 0.01	] : 0.01	3 : 0.01	
g : 0.28	f : 0.18	e : 0.13	h : 0.09	] : 0.08	2 : 0.05	i : 0.05	3 : 0.03	: : 0.03	c : 0.01	d : 0.01	7 : 0.01	
g : 0.28	f : 0.19	h : 0.09	e : 0.08	2 : 0.06	d : 0.05	i : 0.05	3 : 0.03	] : 0.03	b : 0.03	c : 0.03	= : 0.01	7 : 0.01	

#score	1366.6522845425943
#seq	60
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_transcript_m2_run1.txt

#BEAR
ddffffff!!cccmmmmccc4444fffff	chr11:6502637-6502884(+)$1	247	141	170	10.6918
ff[bb!!a[ddddmmmmdddd333a22bb	chr22:19949978-19950222(+)$1	244	82	111	11.9682
#eeeee!!a[ccclllccc]a333eeeee	chr1:193028306-193028584(-)$1	278	190	219	11.3834
fff[ccc"""ddddlllddddccc22fff	chr12:56552366-56552596(+)$1	230	57	86	10.2192
eeee!!ccc[cccnnnnncccccc22eee	chrX:118708424-118708755(+)$1	331	181	210	8.6578
a[a$$$$$eeeeemmmmeeeee22a]a]e	chr10:5932119-5932415(+)$1	296	191	220	9.2880
hhh[bb"""ddddmmmmdddd333bb444	chr15:41056167-41056516(+)$1	349	212	241	12.0049
ccceeeee!!bboooooobb333eeeee]	chr1:52870153-52870383(+)$1	230	44	73	9.2883
gggggg!!ddddnnnnndddd22gggggg	chr11:62446266-62446517(-)$1	251	191	220	10.3249
cceeeee!!ddddmmmmdddd4444eeee	chr12:6976600-6976844(+)$1	244	74	103	13.0665
eeeee[a!!ddddllldddd22a]eeeee	chr3:23958523-23958761(+)$1	238	6	35	11.9700
dd!!ccc[eeeeemmmmeeeee]ccc22d	chr3:127771583-127771828(+)$1	245	32	61	9.3905
dd[==========oooooo==========	chr6:160148505-160148836(+)$1	331	3	32	10.3564
fffeeeee[ddddmmmmdddd]eeeee:d	chr3:154042037-154042349(-)$1	312	73	102	10.4700
c[ccc"""eeeeemmmmeeeee]ccc]cc	chr5:151151412-151151669(+)$1	257	178	207	10.3376
eeeee####ddddlllddddeeeee22a]	chr8:124253369-124253708(-)$1	339	214	243	10.7995
"""gggggggcccmmmmccc]ggggggg3	chr6:26189151-26189395(-)$1	244	193	222	10.2587
=========]ccc4444dddd]ggggggg	chr1:24146909-24147184(-)$1	275	226	255	9.7696
dgggggggcccooooooccc22ggggggg	chr7:43622626-43622999(+)$1	373	47	76	9.6154
edddd[bb[ddddllldddd333bb]ddd	chr19:55972777-55973045(-)$1	268	186	215	10.3766
eeee[bb!!ddddmmmmdddd22bb]eee	chr1:89458164-89458428(-)$1	264	120	149	13.0941
ee[eeeee[cccooooooccc22eeeeee	chr12:120934156-120934451(+)$1	295	183	212	10.5801
eeeee[dddd[bbmmmmbb]dddd]eeee	chrX:152989686-152989948(-)$1	262	100	129	8.7277
[ccc[ccc[ddddmmmmdddd]ccc22cc	chr8:126010694-126010947(+)$1	253	113	142	11.8244
dddd[bb[ccc[ammmma]ccc]bb]ddd	chr7:148725380-148725652(-)$1	272	173	202	9.4447
cccbb$$$$$cccmmmmcccbb]ccc]gg	chr16:11945223-11945496(-)$1	273	71	100	9.4812
hhhh[ccc!!cccmmmmccc22ccchhhh	chrX:47518412-47518618(-)$1	206	149	178	10.2762
hhhhh####cccooooooccc4444hhhh	chr19:18668507-18668826(+)$1	319	273	302	9.8297
ee:eeeeeeeeeemmmmeeeee333eeee	chr7:117824096-117824345(+)$1	249	88	117	9.3131
iiiiii"""ddddmmmmdddd22iiiiii	chr13:51483827-51484131(+)$1	304	31	60	13.5399
gggggg[a[ddddmmmmdddd]a333ggg	chr16:31724489-31724830(+)$1	341	302	331	13.0567
eeeee$$$$$cccmmmmccc22eeeee]c	chr14:70826162-70826497(-)$1	335	6	35	11.1756
dddd[a!!eeeeellleeeee]a]dddd]	chr16:448888-449117(+)$1	229	152	181	8.8420
eee[ccc!!ddddoooooodddd]ccc]e	chr4:88141470-88141795(-)$1	325	41	70	10.4343
eeeee[dddd[ccclllcccddddeeeee	chr15:63481684-63482036(+)$1	352	245	274	9.1182
dddd[bb[a!!cccmmmmccc22a]bbdd	chr5:175815403-175815696(-)$1	293	244	273	8.9682
eeee==========mmmm==========I	chr3:14988682-14988998(-)$1	316	43	72	9.5044
eee==========mmmm==========A}	chr3:14988798-14989079(-)$1	281	125	154	10.0301
=============mmmm============	chr7:23145317-23145755(+)$1	438	71	100	11.6500
ffff[a[ddddoooooodddda]ffffff	chr11:68667939-68668173(-)$1	234	21	50	9.1833
ee[ccc"""ddddmmmmdddd333cccee	chr1:54411126-54411446(-)$1	320	59	88	13.7033
e[eeeee[a[ddddllldddd]aeeeee3	chr5:112312398-112312776(+)$1	378	64	93	11.0995
eeee[bb"""cccmmmmccc333bb]eee	chr7:22857524-22857768(-)$1	244	174	203	12.7022
cc[a[iiiiiiiiillliiiiiiiiiacc	chrX:139014107-139014409(-)$1	302	72	101	9.6590
!eeeee####ddddllldddd]eeeeeff	chr4:186064325-186064723(+)$1	398	251	280	11.3552
ccc==========mmmm==========::	chr5:73980924-73981340(+)$1	416	208	237	9.5255
a]eeeeea[ddddmmmmdddd]ahhhhhh	chr20:17948919-17949217(-)$1	298	161	190	11.1002
bb[ffffffddddmmmmdddd333fffff	chr19:16770675-16770912(-)$1	237	160	189	10.8921
dffffff!!ddddmmmmdddd22ffffff	chr22:42084696-42084973(-)$1	277	111	140	11.8056
f[cccbb!!a[bbmmmmbb]a22bb]ccc	chr5:36152194-36152430(+)$1	236	8	37	9.6609
eeee!!bb[accclllccc]a]bb22eee	chr8:38033798-38034076(-)$1	278	172	201	9.8330
cccgggggggddddllldddd]ggggggg	chr3:45017381-45017754(-)$1	373	130	159	10.6974
ff####bb[ddddmmmmdddd]bb4444f	chr17:3571679-3571951(-)$1	272	98	127	10.8475
bbeeeee!!cccammmma]ccceeeee]b	chr19:55972845-55973106(-)$1	261	114	143	9.9803

#otherMatches

#Seq PSSM
GCGAAACGUAAGUGAGAACUAAGUCGUUU	chr11:6502637-6502884(+)$1	247	141	170	10.6918
CCCGCCUcugcuguuggcagcuguguugc	chr22:19949978-19950222(+)$1	244	82	111	11.9682
GGCCAUGACGGGCAAUGCCGGGGAGUGGU	chr1:193028306-193028584(-)$1	278	190	219	11.3834
GGAUUGGCGUUCAGAUGCUGACCACUUCC	chr12:56552366-56552596(+)$1	230	57	86	10.2192
UCGGCCUCCUCGCCCGCCGCGGGAACCCG	chrX:118708424-118708755(+)$1	331	181	210	8.6578
UGCGUGAGGCCGCAGACGUGGCAGGGAGU	chr10:5932119-5932415(+)$1	296	191	220	9.2880
UGCCCUACCUGCUCAUCAGCACCCAGAUC	chr15:41056167-41056516(+)$1	349	212	241	12.0049
GGCGCAUGACGUACAUCCGCUAACAUGCA	chr1:52870153-52870383(+)$1	230	44	73	9.2883
UCCCCAACCCCGGCCUGCGGGUGUGGGGG	chr11:62446266-62446517(-)$1	251	191	220	10.3249
GGCAGUGGCCGCGACUGCGCGCAGACACU	chr12:6976600-6976844(+)$1	244	74	103	13.0665
CCGGAACUACAUGUCCCAUGACGCUCUGG	chr3:23958523-23958761(+)$1	238	6	35	11.9700
GGUAGCGCGGAAGGUUACUUCUCUGUGUC	chr3:127771583-127771828(+)$1	245	32	61	9.3905
ggcggggccgggcggCGGGGCCUGGUUUC	chr6:160148505-160148836(+)$1	331	3	32	10.3564
ACAGUGGCUUCCGGGCCCGGACGCCAUUU	chr3:154042037-154042349(-)$1	312	73	102	10.4700
CGCGUAGGUACGCCGGGGUGUGGGCGGGG	chr5:151151412-151151669(+)$1	257	178	207	10.3376
CUGCGCCAAGCUCUGCGAGCCGCAGGUGA	chr8:124253369-124253708(-)$1	339	214	243	10.7995
AUCCGCCGCCUGGCUCGCCGCGGCGGCGU	chr6:26189151-26189395(-)$1	244	193	222	10.2587
UCUGCUUUGAGUAUUACGUGUGAUAGGUG	chr1:24146909-24147184(-)$1	275	226	255	9.7696
gggcgggCCCGAGCUACCGGUAGUCUGCC	chr7:43622626-43622999(+)$1	373	47	76	9.6154
UGGCGCUAUUUGGAGACCGACCUUACCGC	chr19:55972777-55973045(-)$1	268	186	215	10.3766
GGGACUCGAGCCUAGGGAGGCGAGGUUCC	chr1:89458164-89458428(-)$1	264	120	149	13.0941
CGGCUCAUAUCAAGAAGGUGAGGAUGGGC	chr12:120934156-120934451(+)$1	295	183	212	10.5801
GCUGCUGUGGGAGAGUUCUGUUGCUGCGG	chrX:152989686-152989948(-)$1	262	100	129	8.7277
GCGCCGCGCUGGCGAGAGCCGCCGCCCGC	chr8:126010694-126010947(+)$1	253	113	142	11.8244
CUGCUCCUGCUGCUCUUGGGGCUGGUGCA	chr7:148725380-148725652(-)$1	272	173	202	9.4447
GCACCAGAAGCCAGCAGUGGGGUUGCACA	chr16:11945223-11945496(-)$1	273	71	100	9.4812
UUGGGAGGGGCGGAAGGCUGAACCUCCAG	chrX:47518412-47518618(-)$1	206	149	178	10.2762
CCGCGGGGAACCGGUCCGGGUCGGGCGCG	chr19:18668507-18668826(+)$1	319	273	302	9.8297
CAGGCGCUAUCCGCUGCCGGGUUCUGGCG	chr7:117824096-117824345(+)$1	249	88	117	9.3131
cggggccccggcgaccccgccccgcUCCG	chr13:51483827-51484131(+)$1	304	31	60	13.5399
AGAGGGGCGGUCGGAAGCGGCGGGAACCC	chr16:31724489-31724830(+)$1	341	302	331	13.0567
AAGUAUGUUACGAUGGCUCGAUUGCUUUU	chr14:70826162-70826497(-)$1	335	6	35	11.1756
GCGUGCAACGGCGGCUCGUUGGGGACGUG	chr16:448888-449117(+)$1	229	152	181	8.8420
GGGGGCUGAGGCGAGAGGACGCCAAgcgc	chr4:88141470-88141795(-)$1	325	41	70	10.4343
CCUUCAUCUCCACCAUCGGUGAGGGAGGG	chr15:63481684-63482036(+)$1	352	245	274	9.1182
CAGCGCCGCGGAUCGAAUGGUGAGGGGGC	chr5:175815403-175815696(-)$1	293	244	273	8.9682
gggcggcggcggcUACGUAGCUGCCGCCG	chr3:14988682-14988998(-)$1	316	43	72	9.5044
ggcggcggcggcUACGUAGCUGCCGCCGG	chr3:14988798-14989079(-)$1	281	125	154	10.0301
UCCUGGGCAGGGCUCGGGUUCUGCCCGGG	chr7:23145317-23145755(+)$1	438	71	100	11.6500
CUGUGCAUUUAGCAUCAUAAAGGGCAGUU	chr11:68667939-68668173(-)$1	234	21	50	9.1833
UGGCGCGAAGAUUUCAGAGUUGGAGCGCG	chr1:54411126-54411446(-)$1	320	59	88	13.7033
ACGGAAGUGAGCGGGUCCCGCCCCUUCCC	chr5:112312398-112312776(+)$1	378	64	93	11.0995
UCAGGACAAAUGUUCAUACAGUAGUACUG	chr7:22857524-22857768(-)$1	244	174	203	12.7022
ggcgagcggguggcccggcCGCCCGCCUC	chrX:139014107-139014409(-)$1	302	72	101	9.6590
CGCCGCUGCCGUCUCCAAGACCGCGGUCG	chr4:186064325-186064723(+)$1	398	251	280	11.3552
GCUGCUGUUGGCGACACUGCUGGCGGCGA	chr5:73980924-73981340(+)$1	416	208	237	9.5255
CCCGAGUUGCUGCAGCAGCAGGAGGAGGA	chr20:17948919-17949217(-)$1	298	161	190	11.1002
GGACUGCGGCUCCAUCCGGGGAACCCGUA	chr19:16770675-16770912(-)$1	237	160	189	10.8921
CGAGUGCUUCUGAAACGUCAGCUGCGCUC	chr22:42084696-42084973(-)$1	277	111	140	11.8056
UUGCGCGCGCAGUGGGGAUGGAACGUUGC	chr5:36152194-36152430(+)$1	236	8	37	9.6609
GAGGGAAGAGGUUUUGGACGCGCUGGCCU	chr8:38033798-38034076(-)$1	278	172	201	9.8330
UGCCGGGAGAGCUCGAUGGGCUUCUCCUG	chr3:45017381-45017754(-)$1	373	130	159	10.6974
GGAGCGGCGCUGGGCGACCAGAGCAGGGU	chr17:3571679-3571951(-)$1	272	98	127	10.8475
CCCUGGGAAGCCCGCAAGAGGCCUCAGCG	chr19:55972845-55973106(-)$1	261	114	143	9.9803

#DB
))((((((..(((....)))....)))))	chr11:6502637-6502884(+)$1	1	141	170	10.6918
((.((..(.((((....))))...)..))	chr22:19949978-19950222(+)$1	1	82	111	11.9682
.(((((..(.(((...))).)...)))))	chr1:193028306-193028584(-)$1	1	190	219	11.3834
(((.(((...((((...)))))))..)))	chr12:56552366-56552596(+)$1	1	57	86	10.2192
((((..(((.(((.....))))))..)))	chrX:118708424-118708755(+)$1	1	181	210	8.6578
(.(.....(((((....)))))..).).)	chr10:5932119-5932415(+)$1	1	191	220	9.2880
(((.((...((((....))))...))...	chr15:41056167-41056516(+)$1	1	212	241	12.0049
((((((((..((......))...))))).	chr1:52870153-52870383(+)$1	1	44	73	9.2883
((((((..((((.....))))..))))))	chr11:62446266-62446517(-)$1	1	191	220	10.3249
(((((((..((((....))))....))))	chr12:6976600-6976844(+)$1	1	74	103	13.0665
(((((.(..((((...))))..).)))))	chr3:23958523-23958761(+)$1	1	6	35	11.9700
((..(((.(((((....))))).)))..)	chr3:127771583-127771828(+)$1	1	32	61	9.3905
((.((((((((((......))))))))))	chr6:160148505-160148836(+)$1	1	3	32	10.3564
)))(((((.((((....)))).))))).(	chr3:154042037-154042349(-)$1	1	73	102	10.4700
(.(((...(((((....))))).))).))	chr5:151151412-151151669(+)$1	1	178	207	10.3376
(((((....((((...)))))))))..).	chr8:124253369-124253708(-)$1	1	214	243	10.7995
...((((((((((....))).))))))).	chr6:26189151-26189395(-)$1	1	193	222	10.2587
))))))))).)))....)))).)))))))	chr1:24146909-24147184(-)$1	1	226	255	9.7696
(((((((((((......)))..)))))))	chr7:43622626-43622999(+)$1	1	47	76	9.6154
(((((.((.((((...))))...)).)))	chr19:55972777-55973045(-)$1	1	186	215	10.3766
((((.((..((((....))))..)).)))	chr1:89458164-89458428(-)$1	1	120	149	13.0941
((.(((((.(((......)))..))))))	chr12:120934156-120934451(+)$1	1	183	212	10.5801
(((((.((((.((....)).)))).))))	chrX:152989686-152989948(-)$1	1	100	129	8.7277
.(((.(((.((((....)))).)))..))	chr8:126010694-126010947(+)$1	1	113	142	11.8244
((((.((.(((.(....).))).)).)))	chr7:148725380-148725652(-)$1	1	173	202	9.4447
(((((.....(((....))))).))).))	chr16:11945223-11945496(-)$1	1	71	100	9.4812
((((.(((..(((....)))..)))))))	chrX:47518412-47518618(-)$1	1	149	178	10.2762
(((((....(((......)))....))))	chr19:18668507-18668826(+)$1	1	273	302	9.8297
)).((((((((((....)))))...))))	chr7:117824096-117824345(+)$1	1	88	117	9.3131
((((((...((((....))))..))))))	chr13:51483827-51484131(+)$1	1	31	60	13.5399
((((((.(.((((....)))).)...)))	chr16:31724489-31724830(+)$1	1	302	331	13.0567
(((((.....(((....)))..))))).)	chr14:70826162-70826497(-)$1	1	6	35	11.1756
((((.(..(((((...))))).).)))).	chr16:448888-449117(+)$1	1	152	181	8.8420
(((.(((..((((......)))).))).)	chr4:88141470-88141795(-)$1	1	41	70	10.4343
(((((.((((.(((...))))))))))))	chr15:63481684-63482036(+)$1	1	245	274	9.1182
((((.((.(..(((....)))..).))))	chr5:175815403-175815696(-)$1	1	244	273	8.9682
))))((((((((((....))))))))))(	chr3:14988682-14988998(-)$1	1	43	72	9.5044
)))((((((((((....))))))))))).	chr3:14988798-14989079(-)$1	1	125	154	10.0301
(((((((((((((....))))))))))))	chr7:23145317-23145755(+)$1	1	71	100	11.6500
((((.(.((((......))))).))))))	chr11:68667939-68668173(-)$1	1	21	50	9.1833
((.(((...((((....))))...)))))	chr1:54411126-54411446(-)$1	1	59	88	13.7033
(.(((((.(.((((...)))).)))))).	chr5:112312398-112312776(+)$1	1	64	93	11.0995
((((.((...(((....)))...)).)))	chr7:22857524-22857768(-)$1	1	174	203	12.7022
((.(.(((((((((...))))))))))))	chrX:139014107-139014409(-)$1	1	72	101	9.6590
.(((((....((((...)))).)))))))	chr4:186064325-186064723(+)$1	1	251	280	11.3552
)))((((((((((....))))))))))..	chr5:73980924-73981340(+)$1	1	208	237	9.5255
).)))))(.((((....)))).)((((((	chr20:17948919-17949217(-)$1	1	161	190	11.1002
((.((((((((((....))))...)))))	chr19:16770675-16770912(-)$1	1	160	189	10.8921
)((((((..((((....))))..))))))	chr22:42084696-42084973(-)$1	1	111	140	11.8056
(.(((((..(.((....)).)..)).)))	chr5:36152194-36152430(+)$1	1	8	37	9.6609
((((..((.((((...))).).))..)))	chr8:38033798-38034076(-)$1	1	172	201	9.8330
((((((((((((((...)))).)))))))	chr3:45017381-45017754(-)$1	1	130	159	10.6974
((....((.((((....)))).))....)	chr17:3571679-3571951(-)$1	1	98	127	10.8475
(((((((..((((....).)))))))).)	chr19:55972845-55973106(-)$1	1	114	143	9.9803

#PSSM
e : 0.31	d : 0.14	c : 0.12	f : 0.11	h : 0.05	a : 0.03	g : 0.03	= : 0.03	b : 0.03	# : 0.01	" : 0.01	[ : 0.01	i : 0.01	! : 0.01	
e : 0.31	d : 0.12	c : 0.12	f : 0.11	[ : 0.07	h : 0.05	g : 0.05	= : 0.03	b : 0.03	" : 0.01	i : 0.01	] : 0.01	
e : 0.33	c : 0.12	[ : 0.11	f : 0.09	d : 0.07	h : 0.05	g : 0.05	= : 0.03	a : 0.01	! : 0.01	" : 0.01	: : 0.01	i : 0.01	# : 0.01	
e : 0.37	g : 0.09	= : 0.09	f : 0.07	c : 0.07	d : 0.07	[ : 0.05	b : 0.03	h : 0.03	$ : 0.01	! : 0.01	i : 0.01	a : 0.01	# : 0.01	
e : 0.27	[ : 0.16	c : 0.11	= : 0.11	g : 0.09	f : 0.05	b : 0.05	! : 0.03	$ : 0.01	d : 0.01	h : 0.01	i : 0.01	# : 0.01	
e : 0.18	c : 0.11	b : 0.11	= : 0.11	g : 0.09	[ : 0.07	f : 0.05	! : 0.05	$ : 0.05	# : 0.05	i : 0.03	a : 0.03	" : 0.01	
e : 0.14	b : 0.14	c : 0.11	= : 0.11	! : 0.07	" : 0.07	f : 0.05	$ : 0.05	# : 0.05	g : 0.05	d : 0.03	[ : 0.03	a : 0.01	i : 0.01	
! : 0.18	" : 0.11	= : 0.11	e : 0.07	[ : 0.07	a : 0.05	c : 0.05	$ : 0.05	# : 0.05	g : 0.05	b : 0.05	d : 0.05	f : 0.03	i : 0.01	
! : 0.18	[ : 0.16	= : 0.11	" : 0.09	e : 0.09	d : 0.07	a : 0.05	c : 0.05	# : 0.05	g : 0.03	$ : 0.03	i : 0.01	f : 0.01	
d : 0.38	e : 0.09	= : 0.09	c : 0.09	! : 0.07	[ : 0.05	" : 0.03	g : 0.03	$ : 0.03	a : 0.03	] : 0.01	i : 0.01	# : 0.01	
d : 0.42	c : 0.27	e : 0.09	= : 0.09	[ : 0.05	b : 0.01	! : 0.01	i : 0.01	
d : 0.40	c : 0.27	e : 0.09	= : 0.09	b : 0.05	o : 0.03	[ : 0.01	i : 0.01	
d : 0.38	c : 0.22	e : 0.09	o : 0.09	= : 0.09	b : 0.03	a : 0.03	n : 0.01	i : 0.01	
m : 0.55	o : 0.12	l : 0.11	d : 0.07	n : 0.03	c : 0.03	4 : 0.01	= : 0.01	i : 0.01	
m : 0.59	l : 0.22	o : 0.12	n : 0.03	4 : 0.01	
m : 0.59	l : 0.22	o : 0.12	n : 0.03	4 : 0.01	
m : 0.59	o : 0.12	l : 0.11	d : 0.05	c : 0.03	n : 0.03	4 : 0.01	e : 0.01	
d : 0.42	c : 0.18	e : 0.09	o : 0.09	= : 0.05	b : 0.03	a : 0.03	m : 0.03	n : 0.01	i : 0.01	
d : 0.42	c : 0.25	e : 0.09	= : 0.07	b : 0.05	o : 0.03	] : 0.03	i : 0.01	
d : 0.44	c : 0.25	e : 0.09	= : 0.09	] : 0.07	b : 0.01	i : 0.01	
d : 0.42	c : 0.11	e : 0.11	= : 0.09	2 : 0.07	a : 0.05	3 : 0.05	4 : 0.01	] : 0.01	b : 0.01	i : 0.01	
2 : 0.20	] : 0.20	3 : 0.14	e : 0.09	= : 0.09	c : 0.07	4 : 0.05	d : 0.05	g : 0.01	b : 0.01	a : 0.01	i : 0.01	
3 : 0.16	2 : 0.14	a : 0.09	] : 0.09	= : 0.09	e : 0.09	c : 0.07	g : 0.07	4 : 0.05	d : 0.05	b : 0.03	i : 0.01	
e : 0.14	3 : 0.12	c : 0.12	b : 0.12	g : 0.09	= : 0.09	4 : 0.05	] : 0.05	d : 0.03	i : 0.03	f : 0.03	2 : 0.01	a : 0.01	h : 0.01	
e : 0.20	c : 0.12	b : 0.11	g : 0.09	= : 0.09	f : 0.07	2 : 0.05	4 : 0.05	a : 0.03	] : 0.03	3 : 0.03	i : 0.03	d : 0.01	h : 0.01	
e : 0.24	2 : 0.11	] : 0.11	g : 0.09	c : 0.09	= : 0.09	f : 0.07	h : 0.05	b : 0.03	i : 0.03	3 : 0.01	d : 0.01	4 : 0.01	
e : 0.31	g : 0.11	f : 0.09	= : 0.09	2 : 0.07	d : 0.05	h : 0.05	c : 0.05	a : 0.03	4 : 0.03	] : 0.03	i : 0.01	b : 0.01	
e : 0.25	g : 0.12	f : 0.11	] : 0.07	c : 0.07	d : 0.07	= : 0.05	h : 0.05	4 : 0.03	: : 0.03	b : 0.01	2 : 0.01	a : 0.01	i : 0.01	A : 0.01	
e : 0.25	f : 0.12	g : 0.11	d : 0.09	c : 0.09	] : 0.05	h : 0.05	b : 0.03	= : 0.03	3 : 0.03	4 : 0.01	i : 0.01	I : 0.01	} : 0.01	: : 0.01	

#score	571.1755771817517
#seq	54
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_transcript_m3_run2.txt

#BEAR
##eeeeevvvvvvvvvvvvveeeee	chr12:97373209-97373439(-)$1	230	64	89	20.4677
bb!!cccxxxxxxxxxxxxxxxccc	chr6:34789181-34789422(+)$1	241	191	216	18.4474
b[eeeee^^^^^^^^^^^^^^^^^^	chr19:13054536-13054787(+)$1	251	131	156	22.7217
[a[dddd^^^^^^^^^^^^^^^^^^	chr11:118706641-118706851(+)$1	210	91	116	23.1004
####dddduuuuuuuuuuuudddd2	chr2:200647958-200648181(-)$1	223	111	136	18.8750
fffff^^^^^^^^^^^^^^^^^^ff	chr13:50482733-50482956(-)$1	223	25	50	21.1373
iiiii[a^^^^^^^^^^^^^^^^^^	chr3:15888421-15888635(-)$1	214	149	174	22.8837
eeee^^^^^^^^^^^^^^^^^^eee	chr12:103872548-103872770(-)$1	222	71	96	20.6943
cc[ddddvvvvvvvvvvvvvdddd2	chr4:154187975-154188196(-)$1	221	66	91	20.2793
###fffffftttttttttttfffff	chr6:4115960-4116233(-)$1	273	31	56	14.8091
"""ddddyyyyyyyyyyyyyyyydd	chr2:200647981-200648205(-)$1	224	63	88	21.4847
cc!!bb^^^^^^^^^^^^^^^^^^^	chr14:90051965-90052203(+)$1	238	128	153	22.5584
:eeeeewwwwwwwwwwwwwweeeee	chr14:100049310-100049556(+)$1	246	204	229	18.8019
""eeeeexxxxxxxxxxxxxxxeee	chr20:4680623-4680876(+)$1	253	63	88	18.8352
dd^^^^^^^^^^^^^^^^^^^dddd	chr11:118841149-118841377(+)$1	228	33	58	19.2398
hhhhhhh^^^^^^^^^^^^^^^^^^	chr16:74356980-74357252(-)$1	272	46	71	21.3731
=======vvvvvvvvvvvvv=====	chr1:118069901-118070144(+)$1	243	151	176	20.3776
iiiii[a^^^^^^^^^^^^^^^^^^	chr3:15888413-15888621(-)$1	208	135	160	22.8837
c[a!!bbtttttttttttbb4444a	chr9:116971664-116971888(+)$1	224	174	199	16.8603
[a[dddd^^^^^^^^^^^^^^^^^^	chr11:118706618-118706841(+)$1	223	114	139	23.1004
fffff^^^^^^^^^^^^^^^^^^^^	chr14:50553678-50553898(+)$1	220	115	140	22.1894
ccc[cccyyyyyyyyyyyyyyyycc	chr11:118916038-118916280(-)$1	242	19	44	21.2197
cc[ddddvvvvvvvvvvvvvdddd2	chr4:154187963-154188175(-)$1	212	45	70	20.2793
fffff^^^^^^^^^^^^^^^^^^ff	chr9:19378759-19378973(-)$1	214	182	207	21.1373
##eeeee^^^^^^^^^^^^^^^^^^	chr7:148680746-148680990(+)$1	244	62	87	22.9696
!ffffffvvvvvvvvvvvvvfffff	chr16:89266348-89266599(-)$1	251	121	146	19.1711
eeeeeyyyyyyyyyyyyyyyyeeee	chr7:2704298-2704512(+)$1	214	49	74	19.7383
hhhhhhhuuuuuuuuuuuuhhhhhh	chr7:99928301-99928510(-)$1	209	8	33	14.9766
ddeeeee^^^^^^^^^^^^^^^^^^	chrM:12176-12409(+)$1	233	138	163	22.3389
c!!dddd^^^^^^^^^^^^^^^^^^	chr6:74227976-74228179(-)$1	203	98	123	23.1256
!ccc[ccctttttttttttccc22c	chr1:240504661-240504878(+)$1	217	161	186	16.0732
b!!ddddvvvvvvvvvvvvvdddd2	chr14:35402619-35402849(-)$1	230	130	155	20.3019
:ffffffvvvvvvvvvvvvvfffff	chr17:48463407-48463657(-)$1	250	65	90	18.1410
!!dddd^^^^^^^^^^^^^^^^^^^	chr6:74227868-74228084(-)$1	216	4	29	22.9746
#ffffff^^^^^^^^^^^^^^^^^^	chr9:19378745-19378959(-)$1	214	166	191	22.2035
F::eeeeeuuuuuuuuuuuueeeee	chr11:64063470-64063707(+)$1	237	11	36	16.3356
bb[ddddvvvvvvvvvvvvvdddd]	chr14:50058853-50059098(-)$1	245	193	218	19.9628
c!!dddd^^^^^^^^^^^^^^^^^^	chr6:74227979-74228183(-)$1	204	102	127	23.1256
====[bb^^^^^^^^^^^^^^^^^^	chr1:180488055-180488286(-)$1	231	189	214	22.5431
hhhhhhhuuuuuuuuuuuuhhhhhh	chr7:99928310-99928541(-)$1	231	39	64	14.9766
ddd!!bb^^^^^^^^^^^^^^^^^^	chrX:64905648-64905893(+)$1	245	133	158	21.8594
iiiiiiiitttttttttttiiiiii	chr13:49669490-49669733(+)$1	243	164	189	15.3471

#otherMatches

#Seq PSSM
auuaaucacaaccaguuacagauug	chr12:97373209-97373439(-)$1	230	64	89	20.4677
AUACCCAAUUAGCAGAUUCCCAUGG	chr6:34789181-34789422(+)$1	241	191	216	18.4474
gaggacaaggaggaagaugaggagg	chr19:13054536-13054787(+)$1	251	131	156	22.7217
cagugguguuacaacuaauuuauca	chr11:118706641-118706851(+)$1	210	91	116	23.1004
cuggcuuUAACAACAACAaaaaaga	chr2:200647958-200648181(-)$1	223	111	136	18.8750
uuacaauuaacuuuuuauauauaug	chr13:50482733-50482956(-)$1	223	25	50	21.1373
agauaacuuauauuuacuagaccuu	chr3:15888421-15888635(-)$1	214	149	174	22.8837
caaauaaucaacagacauauuuuuu	chr12:103872548-103872770(-)$1	222	71	96	20.6943
accgaucacaaccaguuacagauuu	chr4:154187975-154188196(-)$1	221	66	91	20.2793
AUGCUGAAGAAUGCAAUGUCCUUCA	chr6:4115960-4116233(-)$1	273	31	56	14.8091
aagauguAUACGagaacuuauuaac	chr2:200647981-200648205(-)$1	224	63	88	21.4847
uugacuagaaaaaaaaaaaaaaaga	chr14:90051965-90052203(+)$1	238	128	153	22.5584
AAAACUGCUCUAAAAAACAAAGUUU	chr14:100049310-100049556(+)$1	246	204	229	18.8019
AUCCACCUGCAGCCCUUUUAGUGGU	chr20:4680623-4680876(+)$1	253	63	88	18.8352
cucaaaaaaacaaaaaaguaaaGAU	chr11:118841149-118841377(+)$1	228	33	58	19.2398
UUAUGCUgggagaggguggaagaug	chr16:74356980-74357252(-)$1	272	46	71	21.3731
UGAUUUACAUAAUUCAUUUUUAAAU	chr1:118069901-118070144(+)$1	243	151	176	20.3776
agauaacuuauauuuacuagaccuu	chr3:15888413-15888621(-)$1	208	135	160	22.8837
AGGGAGGAAGAGGAGGAGCCGGGAU	chr9:116971664-116971888(+)$1	224	174	199	16.8603
cagugguguuacaacuaauuuauca	chr11:118706618-118706841(+)$1	223	114	139	23.1004
agccuaaaaaaaaaaaaaaaaaaaa	chr14:50553678-50553898(+)$1	220	115	140	22.1894
ACCACUUCUAUUUAUUUAACAUCGA	chr11:118916038-118916280(-)$1	242	19	44	21.2197
accgaucacaaccaguuacagauuu	chr4:154187963-154188175(-)$1	212	45	70	20.2793
AACUGGAGAAAGAAAGAGAAAAUCA	chr9:19378759-19378973(-)$1	214	182	207	21.1373
UCGAGGCUUAUAUAAGUAGCAGCGU	chr7:148680746-148680990(+)$1	244	62	87	22.9696
AUCUAGGGACAAGCAGAAAACUUAG	chr16:89266348-89266599(-)$1	251	121	146	19.1711
UUGGCAAAUACUAAAAAUCUCGUCA	chr7:2704298-2704512(+)$1	214	49	74	19.7383
AAggcuggucaaagugcaacggucu	chr7:99928301-99928510(-)$1	209	8	33	14.9766
UGGUGCAACUCCAAAUAAAAGUAAU	chrM:12176-12409(+)$1	233	138	163	22.3389
CUCAGGUAACAAUUUAAAGUAACAU	chr6:74227976-74228179(-)$1	203	98	123	23.1256
cucuuuuguaaauaaaauucaguug	chr1:240504661-240504878(+)$1	217	161	186	16.0732
auuaaucacaaccaguuccagauuu	chr14:35402619-35402849(-)$1	230	130	155	20.3019
agugguguuuacaacuaauucauca	chr17:48463407-48463657(-)$1	250	65	90	18.1410
UCAGGUAACAAUUUAAAGUAACAUU	chr6:74227868-74228084(-)$1	216	4	29	22.9746
AGAACUGGAGAAAGAAAGAGAAAAU	chr9:19378745-19378959(-)$1	214	166	191	22.2035
CAUUACAUUCAUUUAAUAAUAUGUA	chr11:64063470-64063707(+)$1	237	11	36	16.3356
CAAAUUUAAAAAAUAAGUAAGAAUC	chr14:50058853-50059098(-)$1	245	193	218	19.9628
CUCAGGUAACAAUUUAAAGUAACAU	chr6:74227979-74228183(-)$1	204	102	127	23.1256
UAUCACAAAUACACUUUAUUUCUAU	chr1:180488055-180488286(-)$1	231	189	214	22.5431
AAggcuggucaaagugcaacggucu	chr7:99928310-99928541(-)$1	231	39	64	14.9766
uugacuggcuuAAaaacaaacaaac	chrX:64905648-64905893(+)$1	245	133	158	21.8594
UCAAGGUAGAGAAUCUUUAUACCUU	chr13:49669490-49669733(+)$1	243	164	189	15.3471

#DB
..(((((.............)))))	chr12:97373209-97373439(-)$1	1	64	89	20.4677
((..(((...............)))	chr6:34789181-34789422(+)$1	1	191	216	18.4474
(.(((((..................	chr19:13054536-13054787(+)$1	1	131	156	22.7217
.(.((((..................	chr11:118706641-118706851(+)$1	1	91	116	23.1004
....((((............)))).	chr2:200647958-200648181(-)$1	1	111	136	18.8750
(((((..................))	chr13:50482733-50482956(-)$1	1	25	50	21.1373
(((((.(..................	chr3:15888421-15888635(-)$1	1	149	174	22.8837
((((..................)))	chr12:103872548-103872770(-)$1	1	71	96	20.6943
((.((((.............)))).	chr4:154187975-154188196(-)$1	1	66	91	20.2793
...((((((...........)))))	chr6:4115960-4116233(-)$1	1	31	56	14.8091
...((((................))	chr2:200647981-200648205(-)$1	1	63	88	21.4847
((..((...................	chr14:90051965-90052203(+)$1	1	128	153	22.5584
.(((((..............)))))	chr14:100049310-100049556(+)$1	1	204	229	18.8019
..(((((...............)))	chr20:4680623-4680876(+)$1	1	63	88	18.8352
((...................))))	chr11:118841149-118841377(+)$1	1	33	58	19.2398
(((((((..................	chr16:74356980-74357252(-)$1	1	46	71	21.3731
(((((((.............)))))	chr1:118069901-118070144(+)$1	1	151	176	20.3776
(((((.(..................	chr3:15888413-15888621(-)$1	1	135	160	22.8837
(.(..((...........))....)	chr9:116971664-116971888(+)$1	1	174	199	16.8603
.(.((((..................	chr11:118706618-118706841(+)$1	1	114	139	23.1004
(((((....................	chr14:50553678-50553898(+)$1	1	115	140	22.1894
(((.(((................))	chr11:118916038-118916280(-)$1	1	19	44	21.2197
((.((((.............)))).	chr4:154187963-154188175(-)$1	1	45	70	20.2793
(((((..................))	chr9:19378759-19378973(-)$1	1	182	207	21.1373
..(((((..................	chr7:148680746-148680990(+)$1	1	62	87	22.9696
.((((((.............)))))	chr16:89266348-89266599(-)$1	1	121	146	19.1711
(((((................))))	chr7:2704298-2704512(+)$1	1	49	74	19.7383
(((((((............))))))	chr7:99928301-99928510(-)$1	1	8	33	14.9766
))(((((..................	chrM:12176-12409(+)$1	1	138	163	22.3389
(..((((..................	chr6:74227976-74228179(-)$1	1	98	123	23.1256
.(((.(((...........)))..)	chr1:240504661-240504878(+)$1	1	161	186	16.0732
(..((((.............)))).	chr14:35402619-35402849(-)$1	1	130	155	20.3019
.((((((.............)))))	chr17:48463407-48463657(-)$1	1	65	90	18.1410
..((((...................	chr6:74227868-74228084(-)$1	1	4	29	22.9746
.((((((..................	chr9:19378745-19378959(-)$1	1	166	191	22.2035
(..(((((............)))))	chr11:64063470-64063707(+)$1	1	11	36	16.3356
((.((((.............)))).	chr14:50058853-50059098(-)$1	1	193	218	19.9628
(..((((..................	chr6:74227979-74228183(-)$1	1	102	127	23.1256
((((.((..................	chr1:180488055-180488286(-)$1	1	189	214	22.5431
(((((((............))))))	chr7:99928310-99928541(-)$1	1	39	64	14.9766
(((..((..................	chrX:64905648-64905893(+)$1	1	133	158	21.8594
((((((((...........))))))	chr13:49669490-49669733(+)$1	1	164	189	15.3471

#PSSM
c : 0.16	# : 0.11	b : 0.09	f : 0.07	i : 0.07	d : 0.07	h : 0.07	! : 0.07	[ : 0.04	e : 0.04	" : 0.04	: : 0.04	= : 0.04	F : 0.02	
f : 0.14	c : 0.11	# : 0.09	! : 0.09	i : 0.07	e : 0.07	d : 0.07	h : 0.07	b : 0.04	[ : 0.04	a : 0.04	" : 0.04	= : 0.04	: : 0.02	
e : 0.19	f : 0.14	! : 0.11	[ : 0.11	i : 0.07	h : 0.07	# : 0.04	= : 0.04	c : 0.04	d : 0.04	" : 0.02	^ : 0.02	a : 0.02	: : 0.02	
d : 0.23	e : 0.21	f : 0.16	! : 0.09	i : 0.07	h : 0.07	= : 0.04	# : 0.02	^ : 0.02	[ : 0.02	c : 0.02	
d : 0.26	e : 0.19	f : 0.16	i : 0.07	h : 0.07	c : 0.04	^ : 0.04	! : 0.04	[ : 0.04	b : 0.02	= : 0.02	
d : 0.26	e : 0.16	^ : 0.11	f : 0.09	b : 0.09	c : 0.07	h : 0.07	[ : 0.04	= : 0.02	y : 0.02	i : 0.02	
d : 0.23	^ : 0.16	e : 0.14	f : 0.09	c : 0.07	h : 0.07	b : 0.07	a : 0.04	w : 0.02	= : 0.02	y : 0.02	i : 0.02	
^ : 0.47	v : 0.19	y : 0.07	x : 0.04	u : 0.04	d : 0.02	f : 0.02	w : 0.02	t : 0.02	c : 0.02	e : 0.02	i : 0.02	
^ : 0.47	v : 0.19	u : 0.09	y : 0.07	t : 0.07	x : 0.04	f : 0.02	w : 0.02	
^ : 0.47	v : 0.19	u : 0.09	t : 0.09	y : 0.07	x : 0.04	w : 0.02	
^ : 0.47	v : 0.19	u : 0.09	t : 0.09	y : 0.07	x : 0.04	w : 0.02	
^ : 0.47	v : 0.19	u : 0.09	t : 0.09	y : 0.07	x : 0.04	w : 0.02	
^ : 0.47	v : 0.19	u : 0.09	t : 0.09	y : 0.07	x : 0.04	w : 0.02	
^ : 0.47	v : 0.19	u : 0.09	t : 0.09	y : 0.07	x : 0.04	w : 0.02	
^ : 0.47	v : 0.19	u : 0.09	t : 0.09	y : 0.07	x : 0.04	w : 0.02	
^ : 0.47	v : 0.19	u : 0.09	t : 0.09	y : 0.07	x : 0.04	w : 0.02	
^ : 0.47	v : 0.19	u : 0.09	t : 0.09	y : 0.07	x : 0.04	w : 0.02	
^ : 0.47	v : 0.19	u : 0.09	t : 0.09	y : 0.07	x : 0.04	w : 0.02	
^ : 0.47	v : 0.19	u : 0.09	t : 0.07	y : 0.07	x : 0.04	w : 0.02	b : 0.02	
^ : 0.47	v : 0.19	y : 0.07	x : 0.04	u : 0.04	h : 0.04	t : 0.02	w : 0.02	b : 0.02	c : 0.02	i : 0.02	
^ : 0.47	d : 0.11	e : 0.07	f : 0.07	y : 0.07	x : 0.04	h : 0.04	= : 0.02	4 : 0.02	c : 0.02	i : 0.02	
^ : 0.45	d : 0.14	e : 0.09	f : 0.07	x : 0.04	y : 0.04	h : 0.04	= : 0.02	4 : 0.02	c : 0.02	i : 0.02	
^ : 0.42	e : 0.14	d : 0.14	f : 0.07	y : 0.04	h : 0.04	c : 0.02	= : 0.02	4 : 0.02	2 : 0.02	i : 0.02	
^ : 0.38	d : 0.16	e : 0.14	f : 0.11	c : 0.04	h : 0.04	= : 0.02	4 : 0.02	2 : 0.02	i : 0.02	
^ : 0.38	e : 0.14	f : 0.11	2 : 0.09	c : 0.07	d : 0.04	h : 0.04	= : 0.02	a : 0.02	] : 0.02	i : 0.02	

#score	849.9229499897338
#seq	42
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_UTR_m1_run2.txt

#BEAR
iiiiiiii[dddd!!cccooooooccc333ddddiiiiii	chr17:41622796-41623050(+)$1	254	2	42	13.3790
b[dddd!!eeeeexxxxxxxxxxxxxxxeeeee22dddd]	chr7:2685074-2685312(+)$1	238	76	116	13.2610
GG:dddd[ccc"""ccccccooooooccc]ccc22ccc]d	chr8:17658249-17658521(-)$1	272	105	145	16.2472
"""ccc[ccc"""gggggggooooooggggggg333ccc]	chr12:30906733-30907037(-)$1	304	18	58	17.9248
pccc]cccccc[ccc[bb!!ccclllccc333bb]ccc]c	chr5:138629682-138629995(+)$1	313	212	252	13.2406
a!!gggggggiiiiiiiii[annnnna]iiiiiiiii333	chr7:1577319-1577596(+)$1	277	107	147	14.4373
dccc!!dddd"""a[cccqqqqqqqqccc]a333dddd22	chr12:8024784-8025096(-)$1	312	256	296	14.2281
###ccc[bb^^^^^^^^^^^^^^^^^^bb]ccc333ccc6	chr20:57467353-57467621(+)$1	268	34	74	15.4018
cc[dddd[a[a!!eeeee[cccmmmmccc]eeeee333a]	chr14:54421081-54421331(-)$1	250	13	53	14.7147
"""dddd"""dddd[eeeeeooooooeeeee22dddd22d	chr3:9861863-9862163(+)$1	300	170	210	14.9363
====ccc!!ccc[a[bb[bb[ammmmabb]bb]a]ccc33	chr6:7108016-7108272(+)$1	256	37	77	15.2267

#otherMatches

#Seq PSSM
GGGGUCCUCGGGUGACUCAGGGGCGGGGCAGCCCAGGACU	chr17:41622796-41623050(+)$1	254	2	42	13.3790
UGUUCUGUGGUCUGUCUUUUGUGUUCAGAGACCUGGGGAG	chr7:2685074-2685312(+)$1	238	76	116	13.2610
GCAGCGCCGGCGGAGCGGAGGCGGGUCUCACGUGGGCCAG	chr8:17658249-17658521(-)$1	272	105	145	16.2472
AAGAAUGUUGUGAGUUUGGAUUUUCUUCCAAACGUUCAGG	chr12:30906733-30907037(-)$1	304	18	58	17.9248
GCUCGCUCGAGGCCUGAGGGACAGACUGUACACUGGGGGC	chr5:138629682-138629995(+)$1	313	212	252	13.2406
GGGCUCCCUGGCCCAGGGUGUGGGGAGGGUCCUGGGCUGG	chr7:1577319-1577596(+)$1	277	107	147	14.4373
CUUUGUAGAUUUGUGCAAGAUGAAAAUUGGAAUUGUCUUA	chr12:8024784-8025096(-)$1	312	256	296	14.2281
AGAUUUGUUgggagagggaaagaggggaagaaaggggcga	chr20:57467353-57467621(+)$1	268	34	74	15.4018
UUGCUGCGUGCGACUCUGCUGCUGGUGCAACGGAGGAAGG	chr14:54421081-54421331(-)$1	250	13	53	14.7147
CAAGGGCAAGUGCUAGAGUUGCAGUGAAUUUAGAGCAAAG	chr3:9861863-9862163(+)$1	300	170	210	14.9363
gggccgagacgggggccgggacgacggcuggggcgCCGGG	chr6:7108016-7108272(+)$1	256	37	77	15.2267

#DB
((((((((.((((..(((......)))...))))))))))	chr17:41622796-41623050(+)$1	1	2	42	13.3790
(.((((..(((((...............)))))..)))).	chr7:2685074-2685312(+)$1	1	76	116	13.2610
((.((((.(((...((((((......))).)))..))).)	chr8:17658249-17658521(-)$1	1	105	145	16.2472
...(((.(((...(((((((......)))))))...))).	chr12:30906733-30907037(-)$1	1	18	58	17.9248
.))).)))(((.(((.((..(((...)))...)).))).)	chr5:138629682-138629995(+)$1	1	212	252	13.2406
(..((((((((((((((((.(.....).)))))))))...	chr7:1577319-1577596(+)$1	1	107	147	14.4373
)(((..((((...(.(((........))).)...))))..	chr12:8024784-8025096(-)$1	1	256	296	14.2281
...(((.((..................)).)))...))).	chr20:57467353-57467621(+)$1	1	34	74	15.4018
((.((((.(.(..(((((.(((....))).)))))...).	chr14:54421081-54421331(-)$1	1	13	53	14.7147
...((((...((((.(((((......)))))..))))..)	chr3:9861863-9862163(+)$1	1	170	210	14.9363
(((((((..(((.(.((.((.(....))).)).).)))..	chr6:7108016-7108272(+)$1	1	37	77	15.2267

#PSSM
" : 0.18	i : 0.09	b : 0.09	G : 0.09	p : 0.09	a : 0.09	d : 0.09	# : 0.09	c : 0.09	= : 0.09	
c : 0.27	" : 0.18	i : 0.09	[ : 0.09	G : 0.09	! : 0.09	# : 0.09	= : 0.09	
" : 0.18	c : 0.18	i : 0.09	d : 0.09	: : 0.09	! : 0.09	# : 0.09	[ : 0.09	= : 0.09	
d : 0.36	c : 0.36	i : 0.09	g : 0.09	= : 0.09	
d : 0.36	c : 0.27	i : 0.09	] : 0.09	g : 0.09	! : 0.09	
d : 0.36	c : 0.36	i : 0.09	g : 0.09	! : 0.09	
d : 0.36	[ : 0.18	c : 0.18	i : 0.09	! : 0.09	g : 0.09	
! : 0.18	[ : 0.18	c : 0.18	i : 0.09	g : 0.09	d : 0.09	b : 0.09	" : 0.09	
c : 0.27	[ : 0.09	e : 0.09	g : 0.09	d : 0.09	b : 0.09	a : 0.09	" : 0.09	! : 0.09	
c : 0.36	d : 0.18	e : 0.09	g : 0.09	^ : 0.09	[ : 0.09	" : 0.09	
c : 0.27	d : 0.18	" : 0.18	e : 0.09	i : 0.09	^ : 0.09	a : 0.09	
" : 0.27	d : 0.18	e : 0.09	[ : 0.09	i : 0.09	^ : 0.09	! : 0.09	c : 0.09	
" : 0.27	d : 0.18	e : 0.09	c : 0.09	i : 0.09	^ : 0.09	! : 0.09	[ : 0.09	
a : 0.18	! : 0.09	x : 0.09	" : 0.09	g : 0.09	c : 0.09	i : 0.09	^ : 0.09	e : 0.09	d : 0.09	
[ : 0.27	c : 0.18	! : 0.09	x : 0.09	g : 0.09	i : 0.09	^ : 0.09	e : 0.09	
c : 0.27	e : 0.18	x : 0.09	g : 0.09	[ : 0.09	i : 0.09	^ : 0.09	b : 0.09	
c : 0.27	b : 0.18	e : 0.18	x : 0.09	g : 0.09	i : 0.09	^ : 0.09	
c : 0.27	e : 0.18	x : 0.09	g : 0.09	b : 0.09	i : 0.09	^ : 0.09	[ : 0.09	
o : 0.09	x : 0.09	c : 0.09	g : 0.09	! : 0.09	i : 0.09	q : 0.09	^ : 0.09	[ : 0.09	e : 0.09	b : 0.09	
c : 0.18	o : 0.09	x : 0.09	g : 0.09	! : 0.09	[ : 0.09	q : 0.09	^ : 0.09	e : 0.09	b : 0.09	
o : 0.36	c : 0.18	x : 0.09	a : 0.09	q : 0.09	^ : 0.09	[ : 0.09	
o : 0.36	c : 0.18	x : 0.09	n : 0.09	q : 0.09	^ : 0.09	a : 0.09	
o : 0.36	m : 0.18	x : 0.09	c : 0.09	n : 0.09	q : 0.09	^ : 0.09	
o : 0.36	m : 0.18	x : 0.09	l : 0.09	n : 0.09	q : 0.09	^ : 0.09	
o : 0.27	m : 0.18	c : 0.09	x : 0.09	l : 0.09	n : 0.09	q : 0.09	^ : 0.09	
o : 0.27	m : 0.18	c : 0.09	x : 0.09	l : 0.09	n : 0.09	q : 0.09	^ : 0.09	
c : 0.45	a : 0.18	x : 0.09	g : 0.09	^ : 0.09	e : 0.09	
c : 0.36	b : 0.18	3 : 0.09	x : 0.09	g : 0.09	] : 0.09	e : 0.09	
c : 0.36	e : 0.18	b : 0.18	3 : 0.09	g : 0.09	i : 0.09	
] : 0.45	3 : 0.18	e : 0.18	g : 0.09	i : 0.09	
e : 0.27	c : 0.18	d : 0.09	g : 0.09	3 : 0.09	i : 0.09	a : 0.09	b : 0.09	
e : 0.18	c : 0.18	3 : 0.18	d : 0.09	g : 0.09	i : 0.09	2 : 0.09	b : 0.09	
e : 0.18	c : 0.18	d : 0.09	g : 0.09	b : 0.09	i : 0.09	3 : 0.09	2 : 0.09	] : 0.09	
3 : 0.27	d : 0.18	2 : 0.18	b : 0.09	i : 0.09	e : 0.09	a : 0.09	
i : 0.18	2 : 0.18	3 : 0.18	] : 0.18	d : 0.18	e : 0.09	
d : 0.27	c : 0.27	3 : 0.27	i : 0.18	
c : 0.45	d : 0.27	i : 0.18	3 : 0.09	
c : 0.45	d : 0.18	3 : 0.18	i : 0.09	2 : 0.09	
] : 0.18	c : 0.18	3 : 0.18	2 : 0.18	i : 0.09	d : 0.09	a : 0.09	
] : 0.27	d : 0.18	3 : 0.18	i : 0.09	c : 0.09	2 : 0.09	6 : 0.09	

#score	162.99816143751823
#seq	11
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_CDS_m3_run2.txt

#BEAR
cccuuuuuuuuuuuuccc	chr16:53190513-53190767(+)$1	254	114	132	17.3675
ddddssssssssssdddd	chrM:8306-8524(+)$1	218	183	201	17.7171
fffffssssssssssfff	chrM:3978-4185(+)$1	207	134	152	14.0547
eeeevvvvvvvvvvvvve	chr16:53190714-53190986(+)$1	272	32	50	15.0331
ddddssssssssssdddd	chrM:8359-8570(+)$1	211	130	148	17.7171
ddddssssssssssdddd	chrM:11940-12144(+)$1	204	170	188	17.7171
ddddssssssssssdddd	chrM:12800-13025(+)$1	225	138	156	17.7171
ddddssssssssssdddd	chrM:8370-8574(+)$1	204	119	137	17.7171
:cccssssssssssccc:	chrM:9206-9431(+)$1	225	66	84	14.0605
fffffssssssssssfff	chrM:3961-4178(+)$1	217	151	169	14.0547
ddddssssssssssdddd	chrM:8339-8546(+)$1	207	150	168	17.7171
ddddssssssssssdddd	chrM:11977-12182(+)$1	205	133	151	17.7171
dddduuuuuuuuuuuudd	chrM:13420-13632(+)$1	212	158	176	19.1244
ddddssssssssssdddd	chrM:7612-7834(+)$1	222	11	29	17.7171
ddddssssssssssdddd	chrM:8374-8589(+)$1	215	115	133	17.7171
ddddssssssssssdddd	chrM:11928-12132(+)$1	204	182	200	17.7171
ddddtttttttttttddd	chrM:13796-14026(+)$1	230	197	215	18.9489
fffffssssssssssfff	chrM:4004-4220(+)$1	216	108	126	14.0547
ddddssssssssssdddd	chrM:11982-12189(+)$1	207	128	146	17.7171
!!bbtttttttttttbb2	chr4:186598363-186598698(-)$1	335	255	273	15.5987
ddddtttttttttttddd	chr6:149699511-149699764(+)$1	253	221	239	18.9489
cccxxxxxxxxxxxxxxx	chr1:42656892-42657131(-)$1	239	123	141	12.2972
dddduuuuuuuuuuuudd	chrM:13466-13692(+)$1	226	112	130	19.1244
fffxxxxxxxxxxxxxxx	chr22:24313478-24313751(-)$1	273	151	169	11.8109
ddddssssssssssdddd	chrM:11974-12177(+)$1	203	136	154	17.7171
fffffssssssssssfff	chrM:3999-4204(+)$1	205	113	131	14.0547
ddddssssssssssdddd	chrM:7579-7812(+)$1	233	44	62	17.7171
ddddssssssssssdddd	chr4:186598153-186598393(-)$1	240	50	68	17.7171
hhhuuuuuuuuuuuuhhh	chr22:24313598-24313850(-)$1	252	19	37	15.6965
[ccctttttttttttccc	chr12:76740078-76740369(-)$1	291	23	41	17.3069
cccxxxxxxxxxxxxxxx	chrM:8967-9198(+)$1	231	193	211	12.2972
eeeeuuuuuuuuuuuuee	chr10:43088753-43089013(-)$1	260	120	138	17.8154
ddddssssssssssdddd	chrM:8351-8559(+)$1	208	138	156	17.7171
eeeevvvvvvvvvvvvve	chr16:53190567-53190830(+)$1	263	179	197	15.0331
ddddssssssssssdddd	chr6:56336674-56336956(-)$1	282	2	20	17.7171
fffffssssssssssfff	chrM:3985-4199(+)$1	214	127	145	14.0547
ggggwwwwwwwwwwwwww	chr17:80218782-80219073(-)$1	291	94	112	15.7811
ddddtttttttttttddd	chr19:19906186-19906512(+)$1	326	158	176	18.9489
:ddddssssssssssddd	chrM:11921-12128(+)$1	207	188	206	15.5156
ddddssssssssssdddd	chrM:11968-12174(+)$1	206	142	160	17.7171
eeeeesssssssssseee	chr11:71799295-71799620(-)$1	325	49	67	15.3284
dddduuuuuuuuuuuudd	chr6:64431153-64431435(+)$1	282	37	55	19.1244
eeeettttttttttteee	chr11:102272547-102272812(-)$1	265	39	57	17.4497
cccwwwwwwwwwwwwwwc	chr16:53190911-53191158(+)$1	247	90	108	16.2068
ggggwwwwwwwwwwwwww	chr21:47612326-47612542(-)$1	216	114	132	15.7811
dddduuuuuuuuuuuudd	chrM:13438-13666(+)$1	228	140	158	19.1244
eeeeyyyyyyyyyyyyyy	chrM:13316-13549(+)$1	233	99	117	15.2828
ddddssssssssssdddd	chrM:11989-12196(+)$1	207	121	139	17.7171
ddddssssssssssdddd	chrM:3756-3978(+)$1	222	78	96	17.7171
eeeettttttttttteee	chr4:1018926-1019229(+)$1	303	187	205	17.4497
cccvvvvvvvvvvvvvcc	chrM:5025-5264(+)$1	239	121	139	14.8456
ddddssssssssssdddd	chr21:47612752-47612985(-)$1	233	26	44	17.7171
ddddvvvvvvvvvvvvvd	chrM:9241-9462(+)$1	221	144	162	16.1112
ddddssssssssssdddd	chrM:8347-8551(+)$1	204	142	160	17.7171

#otherMatches

#Seq PSSM
UGUUAACCACCCACCACA	chr16:53190513-53190767(+)$1	254	114	132	17.3675
AUAAAAAUAAAAAAUUAU	chrM:8306-8524(+)$1	218	183	201	17.7171
UGUUCUUAUGAAUUCGAA	chrM:3978-4185(+)$1	207	134	152	14.0547
AAGGAAAUUUUAAUGGAC	chr16:53190714-53190986(+)$1	272	32	50	15.0331
AUAAAAAUAAAAAAUUAU	chrM:8359-8570(+)$1	211	130	148	17.7171
CCCGACAUCAUUACCGGG	chrM:11940-12144(+)$1	204	170	188	17.7171
UAGCCCUUCUAAACGCUA	chrM:12800-13025(+)$1	225	138	156	17.7171
AUAAAAAUAAAAAAUUAU	chrM:8370-8574(+)$1	204	119	137	17.7171
CUCAGCCCUCCUAAUGAC	chrM:9206-9431(+)$1	225	66	84	14.0605
UGUUCUUAUGAAUUCGAA	chrM:3961-4178(+)$1	217	151	169	14.0547
AUAAAAAUAAAAAAUUAU	chrM:8339-8546(+)$1	207	150	168	17.7171
CCCGACAUCAUUACCGGG	chrM:11977-12182(+)$1	205	133	151	17.7171
CGCUACCUCCCUGACAAG	chrM:13420-13632(+)$1	212	158	176	19.1244
CUUCCCCUAUCAUAGAAG	chrM:7612-7834(+)$1	222	11	29	17.7171
AUAAAAAUAAAAAAUUAU	chrM:8374-8589(+)$1	215	115	133	17.7171
CCCGACAUCAUUACCGGG	chrM:11928-12132(+)$1	204	182	200	17.7171
CUAGACCUAACCUGACUA	chrM:13796-14026(+)$1	230	197	215	18.9489
UGUUCUUAUGAAUUCGAA	chrM:4004-4220(+)$1	216	108	126	14.0547
CCCGACAUCAUUACCGGG	chrM:11982-12189(+)$1	207	128	146	17.7171
AACUAACCCAUAACCAGG	chr4:186598363-186598698(-)$1	335	255	273	15.5987
CAGACACAACAGCAUUCU	chr6:149699511-149699764(+)$1	253	221	239	18.9489
ACCCCCACCCCCACAACA	chr1:42656892-42657131(-)$1	239	123	141	12.2972
CGCUACCUCCCUGACAAG	chrM:13466-13692(+)$1	226	112	130	19.1244
CAUCCUCAUAUGAAAUAA	chr22:24313478-24313751(-)$1	273	151	169	11.8109
CCCGACAUCAUUACCGGG	chrM:11974-12177(+)$1	203	136	154	17.7171
UGUUCUUAUGAAUUCGAA	chrM:3999-4204(+)$1	205	113	131	14.0547
CUUCCCCUAUCAUAGAAG	chrM:7579-7812(+)$1	233	44	62	17.7171
ACUGACCCCUAAUCCAGU	chr4:186598153-186598393(-)$1	240	50	68	17.7171
UUUUCUCUGUCUCCUGAA	chr22:24313598-24313850(-)$1	252	19	37	15.6965
UGCAGAGAACAAAGAUGC	chr12:76740078-76740369(-)$1	291	23	41	17.3069
UACGUUUUCACACUUCUA	chrM:8967-9198(+)$1	231	193	211	12.2972
GUGGGAAAACUUUCUACC	chr10:43088753-43089013(-)$1	260	120	138	17.8154
AUAAAAAUAAAAAAUUAU	chrM:8351-8559(+)$1	208	138	156	17.7171
AAGGAAAUUUUAAUGGAC	chr16:53190567-53190830(+)$1	263	179	197	15.0331
CUAGGGUAAACUUACUGG	chr6:56336674-56336956(-)$1	282	2	20	17.7171
UGUUCUUAUGAAUUCGAA	chrM:3985-4199(+)$1	214	127	145	14.0547
ACUUACAGCUAACAAAAG	chr17:80218782-80219073(-)$1	291	94	112	15.7811
ACAGCCUUUUUUUAACUG	chr19:19906186-19906512(+)$1	326	158	176	18.9489
CCCCGACAUCAUUACCGG	chrM:11921-12128(+)$1	207	188	206	15.5156
CCCGACAUCAUUACCGGG	chrM:11968-12174(+)$1	206	142	160	17.7171
GGGGAUUUGCCACCUUCU	chr11:71799295-71799620(-)$1	325	49	67	15.3284
CUGGUUACAUGUAUUUCC	chr6:64431153-64431435(+)$1	282	37	55	19.1244
ACUUCUACCACCUUAAAG	chr11:102272547-102272812(-)$1	265	39	57	17.4497
CAAAUAAUUUCCAAAUAU	chr16:53190911-53191158(+)$1	247	90	108	16.2068
GAUGCACCCGCAACAUCC	chr21:47612326-47612542(-)$1	216	114	132	15.7811
CGCUACCUCCCUGACAAG	chrM:13438-13666(+)$1	228	140	158	19.1244
GAGGACUACUCAAAACCA	chrM:13316-13549(+)$1	233	99	117	15.2828
CCCGACAUCAUUACCGGG	chrM:11989-12196(+)$1	207	121	139	17.7171
GCCAUCAUGACCCUUGGC	chrM:3756-3978(+)$1	222	78	96	17.7171
GCACAUCCACUAUCAGUG	chr4:1018926-1019229(+)$1	303	187	205	17.4497
CGACCCUACUACUAUCUC	chrM:5025-5264(+)$1	239	121	139	14.8456
agaugcacauacaggucu	chr21:47612752-47612985(-)$1	233	26	44	17.7171
AUGUAACACGAGAAAGCA	chrM:9241-9462(+)$1	221	144	162	16.1112
AUAAAAAUAAAAAAUUAU	chrM:8347-8551(+)$1	204	142	160	17.7171

#DB
(((............)))	chr16:53190513-53190767(+)$1	1	114	132	17.3675
((((..........))))	chrM:8306-8524(+)$1	1	183	201	17.7171
(((((..........)))	chrM:3978-4185(+)$1	1	134	152	14.0547
((((.............)	chr16:53190714-53190986(+)$1	1	32	50	15.0331
((((..........))))	chrM:8359-8570(+)$1	1	130	148	17.7171
((((..........))))	chrM:11940-12144(+)$1	1	170	188	17.7171
((((..........))))	chrM:12800-13025(+)$1	1	138	156	17.7171
((((..........))))	chrM:8370-8574(+)$1	1	119	137	17.7171
.(((..........))).	chrM:9206-9431(+)$1	1	66	84	14.0605
(((((..........)))	chrM:3961-4178(+)$1	1	151	169	14.0547
((((..........))))	chrM:8339-8546(+)$1	1	150	168	17.7171
((((..........))))	chrM:11977-12182(+)$1	1	133	151	17.7171
((((............))	chrM:13420-13632(+)$1	1	158	176	19.1244
((((..........))))	chrM:7612-7834(+)$1	1	11	29	17.7171
((((..........))))	chrM:8374-8589(+)$1	1	115	133	17.7171
((((..........))))	chrM:11928-12132(+)$1	1	182	200	17.7171
((((...........)))	chrM:13796-14026(+)$1	1	197	215	18.9489
(((((..........)))	chrM:4004-4220(+)$1	1	108	126	14.0547
((((..........))))	chrM:11982-12189(+)$1	1	128	146	17.7171
..((...........)).	chr4:186598363-186598698(-)$1	1	255	273	15.5987
((((...........)))	chr6:149699511-149699764(+)$1	1	221	239	18.9489
(((...............	chr1:42656892-42657131(-)$1	1	123	141	12.2972
((((............))	chrM:13466-13692(+)$1	1	112	130	19.1244
(((...............	chr22:24313478-24313751(-)$1	1	151	169	11.8109
((((..........))))	chrM:11974-12177(+)$1	1	136	154	17.7171
(((((..........)))	chrM:3999-4204(+)$1	1	113	131	14.0547
((((..........))))	chrM:7579-7812(+)$1	1	44	62	17.7171
((((..........))))	chr4:186598153-186598393(-)$1	1	50	68	17.7171
(((............)))	chr22:24313598-24313850(-)$1	1	19	37	15.6965
.(((...........)))	chr12:76740078-76740369(-)$1	1	23	41	17.3069
(((...............	chrM:8967-9198(+)$1	1	193	211	12.2972
((((............))	chr10:43088753-43089013(-)$1	1	120	138	17.8154
((((..........))))	chrM:8351-8559(+)$1	1	138	156	17.7171
((((.............)	chr16:53190567-53190830(+)$1	1	179	197	15.0331
((((..........))))	chr6:56336674-56336956(-)$1	1	2	20	17.7171
(((((..........)))	chrM:3985-4199(+)$1	1	127	145	14.0547
((((..............	chr17:80218782-80219073(-)$1	1	94	112	15.7811
((((...........)))	chr19:19906186-19906512(+)$1	1	158	176	18.9489
.((((..........)))	chrM:11921-12128(+)$1	1	188	206	15.5156
((((..........))))	chrM:11968-12174(+)$1	1	142	160	17.7171
(((((..........)))	chr11:71799295-71799620(-)$1	1	49	67	15.3284
((((............))	chr6:64431153-64431435(+)$1	1	37	55	19.1244
((((...........)))	chr11:102272547-102272812(-)$1	1	39	57	17.4497
(((..............)	chr16:53190911-53191158(+)$1	1	90	108	16.2068
((((..............	chr21:47612326-47612542(-)$1	1	114	132	15.7811
((((............))	chrM:13438-13666(+)$1	1	140	158	19.1244
((((..............	chrM:13316-13549(+)$1	1	99	117	15.2828
((((..........))))	chrM:11989-12196(+)$1	1	121	139	17.7171
((((..........))))	chrM:3756-3978(+)$1	1	78	96	17.7171
((((...........)))	chr4:1018926-1019229(+)$1	1	187	205	17.4497
(((.............))	chrM:5025-5264(+)$1	1	121	139	14.8456
((((..........))))	chr21:47612752-47612985(-)$1	1	26	44	17.7171
((((.............)	chrM:9241-9462(+)$1	1	144	162	16.1112
((((..........))))	chrM:8347-8551(+)$1	1	142	160	17.7171

#PSSM
d : 0.53	e : 0.12	f : 0.11	c : 0.09	: : 0.03	g : 0.03	! : 0.01	h : 0.01	[ : 0.01	
d : 0.55	c : 0.12	e : 0.12	f : 0.11	g : 0.03	! : 0.01	h : 0.01	
d : 0.55	c : 0.12	e : 0.12	f : 0.11	g : 0.03	b : 0.01	h : 0.01	
d : 0.55	e : 0.12	f : 0.09	x : 0.05	u : 0.03	c : 0.03	g : 0.03	b : 0.01	w : 0.01	v : 0.01	
s : 0.40	u : 0.12	t : 0.12	f : 0.09	v : 0.07	x : 0.05	w : 0.05	d : 0.01	e : 0.01	y : 0.01	
s : 0.53	u : 0.12	t : 0.12	v : 0.07	x : 0.05	w : 0.05	y : 0.01	
s : 0.53	u : 0.12	t : 0.12	v : 0.07	x : 0.05	w : 0.05	y : 0.01	
s : 0.53	u : 0.12	t : 0.12	v : 0.07	x : 0.05	w : 0.05	y : 0.01	
s : 0.53	u : 0.12	t : 0.12	v : 0.07	x : 0.05	w : 0.05	y : 0.01	
s : 0.53	u : 0.12	t : 0.12	v : 0.07	x : 0.05	w : 0.05	y : 0.01	
s : 0.53	u : 0.12	t : 0.12	v : 0.07	x : 0.05	w : 0.05	y : 0.01	
s : 0.53	u : 0.12	t : 0.12	v : 0.07	x : 0.05	w : 0.05	y : 0.01	
s : 0.53	u : 0.12	t : 0.12	v : 0.07	x : 0.05	w : 0.05	y : 0.01	
s : 0.53	u : 0.12	t : 0.12	v : 0.07	x : 0.05	w : 0.05	y : 0.01	
d : 0.38	u : 0.12	s : 0.12	t : 0.12	v : 0.07	x : 0.05	w : 0.05	c : 0.01	y : 0.01	
d : 0.46	f : 0.09	u : 0.09	v : 0.07	c : 0.05	x : 0.05	w : 0.05	e : 0.05	b : 0.01	h : 0.01	y : 0.01	
d : 0.53	f : 0.09	c : 0.07	e : 0.07	v : 0.05	x : 0.05	w : 0.05	b : 0.01	h : 0.01	y : 0.01	
d : 0.55	e : 0.11	f : 0.09	c : 0.07	x : 0.05	w : 0.03	: : 0.01	2 : 0.01	h : 0.01	y : 0.01	

#score	899.7483728210665
#seq	54
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF803GSP_RPS11_transcript_m3_run2.txt

#BEAR
#eeeeennnnneeeee5	chr19:48259088-48259321(+)$1	233	193	210	11.0714
:eeeeennnnneeeee:	chrM:12180-12410(+)$1	230	94	111	10.3407
c[eeeeemmmmeeeeec	chr7:5340286-5340490(+)$1	204	147	164	7.0261
bb[cccnnnnnccc]bb	chr22:19418918-19419217(-)$1	299	109	126	7.9163
ggggggnnnnngggggg	chr8:141554079-141554299(-)$1	220	140	157	9.1726
ee[cccnnnnnccc]ee	chr1:22263547-22263814(-)$1	267	23	40	9.0339
heeeeennnnneeeee:	chr17:56408727-56408977(-)$1	250	69	86	10.7849
[eeeeennnnneeeee]	chr6:26204967-26205210(+)$1	243	112	129	11.4914
ggggggnnnnngggggg	chr8:141554074-141554279(-)$1	205	120	137	9.1726
!!eeeeemmmmeeeee5	chr5:79947513-79947762(-)$1	249	62	79	6.8140
ffffffnnnnnffffff	chrM:4193-4430(+)$1	237	165	182	8.0499
gggggoooooogggggg	chr17:56408990-56409278(-)$1	288	270	287	5.8869
ee:cccnnnnncccddd	chr2:54197781-54198048(-)$1	267	133	150	7.4153
:eeeeennnnneeeee:	chrM:12068-12306(+)$1	238	206	223	10.3407
:eeeeennnnneeeee:	chr2:37359952-37360180(-)$1	228	130	147	10.3407
c[eeeeemmmmeeeeec	chr7:5340290-5340511(+)$1	221	143	160	7.0261

#otherMatches

#Seq PSSM
AGAAGGCCUUUCCUUCC	chr19:48259088-48259321(+)$1	233	193	210	11.0714
AGGAUAACAGCUAUCCA	chrM:12180-12410(+)$1	230	94	111	10.3407
UGUGGGGACAUUCUCAG	chr7:5340286-5340490(+)$1	204	147	164	7.0261
cggccggagggcgggug	chr22:19418918-19419217(-)$1	299	109	126	7.9163
GUGUCUGGAGGGGACAC	chr8:141554079-141554299(-)$1	220	140	157	9.1726
uggccggcgagcgggcg	chr1:22263547-22263814(-)$1	267	23	40	9.0339
GCCUUUagggggaaggg	chr17:56408727-56408977(-)$1	250	69	86	10.7849
GCUGUGACUUACACGGA	chr6:26204967-26205210(+)$1	243	112	129	11.4914
GUGUCUGGAGGGGACAC	chr8:141554074-141554279(-)$1	205	120	137	9.1726
AAUAAACGAAAGUUUAA	chr5:79947513-79947762(-)$1	249	62	79	6.8140
gagaauccaaaauucuc	chrM:4193-4430(+)$1	237	165	182	8.0499
GCUGGAAGCGGCCAGCC	chr17:56408990-56409278(-)$1	288	270	287	5.8869
CCGGCCGAGCGGGCGGG	chr2:54197781-54198048(-)$1	267	133	150	7.4153
AGGAUAACAGCUAUCCA	chrM:12068-12306(+)$1	238	206	223	10.3407
caugccgaaaagguauc	chr2:37359952-37360180(-)$1	228	130	147	10.3407
UGUGGGGACAUUCUCAG	chr7:5340290-5340511(+)$1	221	143	160	7.0261

#DB
.(((((.....))))).	chr19:48259088-48259321(+)$1	1	193	210	11.0714
.(((((.....))))).	chrM:12180-12410(+)$1	1	94	111	10.3407
(.(((((....))))))	chr7:5340286-5340490(+)$1	1	147	164	7.0261
((.(((.....))).))	chr22:19418918-19419217(-)$1	1	109	126	7.9163
((((((.....))))))	chr8:141554079-141554299(-)$1	1	140	157	9.1726
((.(((.....))).))	chr1:22263547-22263814(-)$1	1	23	40	9.0339
)(((((.....))))).	chr17:56408727-56408977(-)$1	1	69	86	10.7849
.(((((.....))))).	chr6:26204967-26205210(+)$1	1	112	129	11.4914
((((((.....))))))	chr8:141554074-141554279(-)$1	1	120	137	9.1726
..(((((....))))).	chr5:79947513-79947762(-)$1	1	62	79	6.8140
((((((.....))))))	chrM:4193-4430(+)$1	1	165	182	8.0499
(((((......))))))	chr17:56408990-56409278(-)$1	1	270	287	5.8869
)).(((.....)))(((	chr2:54197781-54198048(-)$1	1	133	150	7.4153
.(((((.....))))).	chrM:12068-12306(+)$1	1	206	223	10.3407
.(((((.....))))).	chr2:37359952-37360180(-)$1	1	130	147	10.3407
(.(((((....))))))	chr7:5340290-5340511(+)$1	1	143	160	7.0261

#PSSM
: : 0.18	g : 0.18	c : 0.12	e : 0.12	# : 0.06	b : 0.06	h : 0.06	[ : 0.06	! : 0.06	f : 0.06	
e : 0.50	g : 0.18	[ : 0.12	b : 0.06	! : 0.06	f : 0.06	
e : 0.56	g : 0.18	[ : 0.12	f : 0.06	: : 0.06	
e : 0.56	c : 0.18	g : 0.18	f : 0.06	
e : 0.56	c : 0.18	g : 0.18	f : 0.06	
e : 0.56	c : 0.18	g : 0.12	f : 0.06	o : 0.06	
n : 0.75	e : 0.18	o : 0.06	
n : 0.75	m : 0.18	o : 0.06	
n : 0.75	m : 0.18	o : 0.06	
n : 0.75	m : 0.18	o : 0.06	
n : 0.75	m : 0.18	o : 0.06	
e : 0.56	c : 0.18	g : 0.18	f : 0.06	
e : 0.56	c : 0.18	g : 0.18	f : 0.06	
e : 0.56	c : 0.18	g : 0.18	f : 0.06	
e : 0.56	g : 0.18	] : 0.12	f : 0.06	d : 0.06	
e : 0.62	g : 0.18	b : 0.06	f : 0.06	d : 0.06	
: : 0.25	g : 0.18	5 : 0.12	c : 0.12	b : 0.06	e : 0.06	] : 0.06	f : 0.06	d : 0.06	

#score	141.88409331146244
#seq	16
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_transcript_m2_run1.txt

#BEAR
ddddrrrrrrrrrdd	chr11:93454751-93454985(+)$1	234	125	140	7.3675
ccccqqqqqqqqccc	chr9:136217620-136217854(+)$1	234	126	141	12.2430
ddddrrrrrrrrrdd	chr11:122929530-122929741(-)$1	211	49	64	7.3675
ggggqqqqqqqqggg	chrX:118921214-118921428(-)$1	214	3	18	11.4739
:cccqqqqqqqqccc	chr6:86352728-86352987(-)$1	259	192	207	11.4015
iiiiqqqqqqqqiii	chrX:118921228-118921462(-)$1	234	37	52	11.4116
eeeerrrrrrrrree	chr2:97559862-97560146(-)$1	284	213	228	7.0236
[cccqqqqqqqqccc	chr17:80230606-80230856(-)$1	250	111	126	12.2641
ffffqqqqqqqqfff	chr8:48650435-48650652(-)$1	217	77	92	10.9378
:cccqqqqqqqqccc	chr20:26189723-26189972(-)$1	249	13	28	11.4015
eebbqqqqqqqqbb]	chr11:17096155-17096375(-)$1	220	25	40	10.8818
eeeeqqqqqqqqeee	chr2:133015207-133015423(-)$1	216	158	173	11.0961
eeeeqqqqqqqqeee	chr11:17097223-17097463(-)$1	240	154	169	11.0961
ggggqqqqqqqqggg	chr20:26180052-26180259(-)$1	207	181	196	11.4739
eeeeqqqqqqqqeee	chr2:97559946-97560198(-)$1	252	61	76	11.0961
[cccqqqqqqqqccc	chr12:6054295-6054510(-)$1	215	146	161	12.2641
ddddqqqqqqqqddd	chr3:197901260-197901513(+)$1	253	37	52	11.4813
ddddqqqqqqqqddd	chrM:14361-14591(-)$1	230	62	77	11.4813
ff[aqqqqqqqqa]f	chr3:141153138-141153372(+)$1	234	50	65	11.0548
:cccqqqqqqqqccc	chr2:133015223-133015439(-)$1	216	68	83	11.4015
ggggqqqqqqqqggg	chr17:20772643-20772926(+)$1	283	108	123	11.4739
eebbqqqqqqqqbb]	chr11:17096135-17096355(-)$1	220	5	20	10.8818
:cccqqqqqqqqccc	chr1:145442444-145442652(+)$1	208	191	206	11.4015
cccrrrrrrrrrccc	chr8:9629508-9629787(+)$1	279	261	276	7.7776
a[bbqqqqqqqqbb]	chrX:149108412-149108658(+)$1	246	75	90	10.8124
ccccqqqqqqqqccc	chr9:136217654-136217870(+)$1	216	92	107	12.2430
)cccqqqqqqqqccc	chr6:16266314-16266540(+)$1	226	161	176	11.8209
ccssssssssssccc	chr11:122929979-122930223(-)$1	244	52	67	6.4586
ggggqqqqqqqqggg	chr1:173835351-173835567(-)$1	216	147	162	11.4739
ddddqqqqqqqqddd	chr7:151845069-151845315(-)$1	246	38	53	11.4813
ffffrrrrrrrrrff	chr1:63833241-63833466(+)$1	225	177	192	6.8216
ddddrrrrrrrrrdd	chr11:122929515-122929718(-)$1	203	26	41	7.3675
ffbbrrrrrrrrrbb	chr9:33952672-33952926(-)$1	254	96	111	6.4670
ddddrrrrrrrrrdd	chr22:38882100-38882389(-)$1	289	70	85	7.3675
ggggqqqqqqqqggg	chr1:173835344-173835551(-)$1	207	131	146	11.4739
[cccqqqqqqqqccc	chr12:6619595-6619818(+)$1	223	92	107	12.2641
[cccqqqqqqqqccc	chr16:447647-447876(+)$1	229	1	16	12.2641
ccssssssssssccc	chr11:122929940-122930179(-)$1	239	8	23	6.4586
ddddqqqqqqqqddd	chr19:8550671-8550944(+)$1	273	95	110	11.4813
bcccqqqqqqqqccc	chr6:16266299-16266514(+)$1	215	181	196	11.9965
eebbqqqqqqqqbb]	chr11:17096175-17096386(-)$1	211	36	51	10.8818
ddddqqqqqqqqddd	chr11:17097263-17097497(-)$1	234	23	38	11.4813

#otherMatches

#Seq PSSM
UGUUUAUAAAGAUAA	chr11:93454751-93454985(+)$1	234	125	140	7.3675
UCAGCAUUGCAUCUG	chr9:136217620-136217854(+)$1	234	126	141	12.2430
auggauuccaaaacc	chr11:122929530-122929741(-)$1	211	49	64	7.3675
CUUCAUUUUGUGGAA	chrX:118921214-118921428(-)$1	214	3	18	11.4739
gcuggaggagggcag	chr6:86352728-86352987(-)$1	259	192	207	11.4015
CUUCAUUUUGUGGAA	chrX:118921228-118921462(-)$1	234	37	52	11.4116
UCAUAAGGUAGAGGU	chr2:97559862-97560146(-)$1	284	213	228	7.0236
ggccgcgaagcgggC	chr17:80230606-80230856(-)$1	250	111	126	12.2641
GGCCGAGCCAGGGGC	chr8:48650435-48650652(-)$1	217	77	92	10.9378
ACGCGGGGAAGGGCG	chr20:26189723-26189972(-)$1	249	13	28	11.4015
UAGAUUUUCCUUUCA	chr11:17096155-17096375(-)$1	220	25	40	10.8818
UGGGGAGUGUGACCC	chr2:133015207-133015423(-)$1	216	158	173	11.0961
CACGUUGGUUUCUGU	chr11:17097223-17097463(-)$1	240	154	169	11.0961
AACUAUUGACCAGGU	chr20:26180052-26180259(-)$1	207	181	196	11.4739
ccuggguaugugugg	chr2:97559946-97560198(-)$1	252	61	76	11.0961
GCGGUGAGUUUUCCG	chr12:6054295-6054510(-)$1	215	146	161	12.2641
uuaggguuaggauua	chr3:197901260-197901513(+)$1	253	37	52	11.4813
GUUAUAUGGGUUUAA	chrM:14361-14591(-)$1	230	62	77	11.4813
UAAGAAAAGGGACCU	chr3:141153138-141153372(+)$1	234	50	65	11.0548
AGGCUCAAGGUUGCC	chr2:133015223-133015439(-)$1	216	68	83	11.4015
gacggagggaaaugu	chr17:20772643-20772926(+)$1	283	108	123	11.4739
UAGAUUUUCCUUUCA	chr11:17096135-17096355(-)$1	220	5	20	10.8818
UGUCUGUGAGAUGGC	chr1:145442444-145442652(+)$1	208	191	206	11.4015
gcuggggggaggagu	chr8:9629508-9629787(+)$1	279	261	276	7.7776
UGGGAGGAGGAGCUG	chrX:149108412-149108658(+)$1	246	75	90	10.8124
UCAGCAUUGCAUCUG	chr9:136217654-136217870(+)$1	216	92	107	12.2430
agagcuguaacacuc	chr6:16266314-16266540(+)$1	226	161	176	11.8209
GUAUCUCAAUUAACC	chr11:122929979-122930223(-)$1	244	52	67	6.4586
UGUUAAUGGUUAAGC	chr1:173835351-173835567(-)$1	216	147	162	11.4739
GGCUAUGAAGCCAGC	chr7:151845069-151845315(-)$1	246	38	53	11.4813
CUCGGACGCGCCACG	chr1:63833241-63833466(+)$1	225	177	192	6.8216
auggauuccaaaacc	chr11:122929515-122929718(-)$1	203	26	41	7.3675
UGGUAAUUUCCAAGC	chr9:33952672-33952926(-)$1	254	96	111	6.4670
AUCGUAGUGAAACCG	chr22:38882100-38882389(-)$1	289	70	85	7.3675
UGUUAAUGGUUAAGC	chr1:173835344-173835551(-)$1	207	131	146	11.4739
GAAACACAGAUCUUU	chr12:6619595-6619818(+)$1	223	92	107	12.2641
GGCCggggugggggu	chr16:447647-447876(+)$1	229	1	16	12.2641
GUAUCUCAAUUAACC	chr11:122929940-122930179(-)$1	239	8	23	6.4586
CAUGGGUGCCGGCAU	chr19:8550671-8550944(+)$1	273	95	110	11.4813
uguaacacucacugc	chr6:16266299-16266514(+)$1	215	181	196	11.9965
UAGAUUUUCCUUUCA	chr11:17096175-17096386(-)$1	211	36	51	10.8818
caguaaauguuagcu	chr11:17097263-17097497(-)$1	234	23	38	11.4813

#DB
((((.........))	chr11:93454751-93454985(+)$1	1	125	140	7.3675
)(((........)))	chr9:136217620-136217854(+)$1	1	126	141	12.2430
((((.........))	chr11:122929530-122929741(-)$1	1	49	64	7.3675
((((........)))	chrX:118921214-118921428(-)$1	1	3	18	11.4739
.(((........)))	chr6:86352728-86352987(-)$1	1	192	207	11.4015
((((........)))	chrX:118921228-118921462(-)$1	1	37	52	11.4116
((((.........))	chr2:97559862-97560146(-)$1	1	213	228	7.0236
.(((........)))	chr17:80230606-80230856(-)$1	1	111	126	12.2641
((((........)))	chr8:48650435-48650652(-)$1	1	77	92	10.9378
.(((........)))	chr20:26189723-26189972(-)$1	1	13	28	11.4015
((((........)).	chr11:17096155-17096375(-)$1	1	25	40	10.8818
((((........)))	chr2:133015207-133015423(-)$1	1	158	173	11.0961
((((........)))	chr11:17097223-17097463(-)$1	1	154	169	11.0961
((((........)))	chr20:26180052-26180259(-)$1	1	181	196	11.4739
((((........)))	chr2:97559946-97560198(-)$1	1	61	76	11.0961
.(((........)))	chr12:6054295-6054510(-)$1	1	146	161	12.2641
((((........)))	chr3:197901260-197901513(+)$1	1	37	52	11.4813
((((........)))	chrM:14361-14591(-)$1	1	62	77	11.4813
((.(........).)	chr3:141153138-141153372(+)$1	1	50	65	11.0548
.(((........)))	chr2:133015223-133015439(-)$1	1	68	83	11.4015
((((........)))	chr17:20772643-20772926(+)$1	1	108	123	11.4739
((((........)).	chr11:17096135-17096355(-)$1	1	5	20	10.8818
.(((........)))	chr1:145442444-145442652(+)$1	1	191	206	11.4015
(((.........)))	chr8:9629508-9629787(+)$1	1	261	276	7.7776
(.((........)).	chrX:149108412-149108658(+)$1	1	75	90	10.8124
)(((........)))	chr9:136217654-136217870(+)$1	1	92	107	12.2430
.(((........)))	chr6:16266314-16266540(+)$1	1	161	176	11.8209
((..........)))	chr11:122929979-122930223(-)$1	1	52	67	6.4586
((((........)))	chr1:173835351-173835567(-)$1	1	147	162	11.4739
((((........)))	chr7:151845069-151845315(-)$1	1	38	53	11.4813
((((.........))	chr1:63833241-63833466(+)$1	1	177	192	6.8216
((((.........))	chr11:122929515-122929718(-)$1	1	26	41	7.3675
((((.........))	chr9:33952672-33952926(-)$1	1	96	111	6.4670
((((.........))	chr22:38882100-38882389(-)$1	1	70	85	7.3675
((((........)))	chr1:173835344-173835551(-)$1	1	131	146	11.4739
.(((........)))	chr12:6619595-6619818(+)$1	1	92	107	12.2641
.(((........)))	chr16:447647-447876(+)$1	1	1	16	12.2641
((..........)))	chr11:122929940-122930179(-)$1	1	8	23	6.4586
((((........)))	chr19:8550671-8550944(+)$1	1	95	110	11.4813
((((........)))	chr6:16266299-16266514(+)$1	1	181	196	11.9965
((((........)).	chr11:17096175-17096386(-)$1	1	36	51	10.8818
((((........)))	chr11:17097263-17097497(-)$1	1	23	38	11.4813

#PSSM
d : 0.21	e : 0.16	c : 0.11	g : 0.11	: : 0.09	[ : 0.09	f : 0.09	i : 0.02	a : 0.02	) : 0.02	b : 0.02	
c : 0.35	d : 0.21	e : 0.16	g : 0.11	f : 0.09	i : 0.02	[ : 0.02	
c : 0.30	d : 0.21	g : 0.11	b : 0.11	e : 0.09	f : 0.04	s : 0.04	i : 0.02	[ : 0.02	
c : 0.28	d : 0.21	g : 0.11	b : 0.11	e : 0.09	f : 0.04	s : 0.04	i : 0.02	a : 0.02	r : 0.02	
q : 0.76	r : 0.19	s : 0.04	
q : 0.76	r : 0.19	s : 0.04	
q : 0.76	r : 0.19	s : 0.04	
q : 0.76	r : 0.19	s : 0.04	
q : 0.76	r : 0.19	s : 0.04	
q : 0.76	r : 0.19	s : 0.04	
q : 0.76	r : 0.19	s : 0.04	
q : 0.76	r : 0.19	s : 0.04	
c : 0.35	r : 0.16	g : 0.11	d : 0.11	b : 0.09	e : 0.07	i : 0.02	f : 0.02	a : 0.02	
c : 0.35	d : 0.21	g : 0.11	b : 0.11	e : 0.09	f : 0.04	i : 0.02	] : 0.02	
c : 0.35	d : 0.21	g : 0.11	e : 0.09	] : 0.09	f : 0.07	i : 0.02	b : 0.02	

#score	438.3718722988384
#seq	42
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_CDS_m2_run1.txt

#BEAR
eee!!bbnnnnnbb]eeee	chr11:290938-291233(+)$1	295	19	38	8.7781
dddd[bbnnnnnbb]dddd	chr6:158475895-158476166(+)$1	271	169	188	7.5424
###ddddnnnnndddd]ff	chr17:7530780-7531109(-)$1	329	225	244	7.5832
a[bb[bbnnnnnbb]bbac	chr14:74759762-74760043(-)$1	281	110	129	7.6474
gg!!cccmmmmccc22ggg	chr6:132199584-132199855(+)$1	271	74	93	5.9229
eeeee[annnnna]eeeee	chr12:132414477-132414768(+)$1	291	190	209	8.6888
gggggggnnnnnggggggg	chr9:117062804-117063053(+)$1	249	216	235	10.6671
gggggggnnnnnggggggg	chr20:34220613-34220899(-)$1	286	142	161	10.6671
!!eeeeennnnneeeee]d	chr10:105386791-105387023(-)$1	232	135	154	8.3797
hhhhhhhnnnnnhhhhhhh	chr20:42086987-42087244(+)$1	257	57	76	8.2159
!ccc[bbnnnnnbbccc33	chr6:158480200-158480483(+)$1	283	236	255	8.7868
[gggggggmmmmggggggg	chr17:79954214-79954484(+)$1	270	38	57	7.3551
[bb[cccnnnnnccc]bb]	chr14:39554916-39555182(-)$1	266	199	218	8.1943
gggggggnnnnnggggggg	chr6:31698535-31698810(-)$1	275	48	67	10.6671
eeee[aooooooa]eeeee	chr14:24035133-24035392(-)$1	259	19	38	6.8119
fgggggggmmmmggggggg	chr17:79969318-79969551(+)$1	233	106	125	7.1572
iiiiiiiillliiiiiiii	chr20:61594882-61595122(+)$1	240	218	237	7.6678
eeee[aooooooa]eeeee	chr22:38902004-38902249(-)$1	245	87	106	6.8119
cccddddnnnnndddd]cc	chr5:176516793-176517026(+)$1	233	25	44	7.7067
gggg[bboooooobbgggg	chr2:54197788-54198046(-)$1	258	234	253	7.7825
hhhhhhhoooooohhhhhh	chr16:15127067-15127357(+)$1	290	83	102	6.3912
[gggggggmmmmggggggg	chr12:100934431-100934699(+)$1	268	218	237	7.3551
gggggbbnnnnnbb]gggg	chr3:149374545-149374849(-)$1	304	60	79	10.0484
eee[cccnnnnnccc22ee	chr16:75270541-75270835(-)$1	294	201	220	8.6501
gggggggnnnnnggggggg	chr17:73975010-73975276(-)$1	266	157	176	10.6671
b[ggggggglllggggggg	chr11:64681220-64681494(-)$1	274	137	156	7.5684
[ffffffooooooffffff	chr1:146684699-146684996(-)$1	297	66	85	6.7361
gggggggoooooogggggg	chr20:39791787-39792024(+)$1	237	134	153	8.7073
fffffbbnnnnnbb]ffff	chr11:6503271-6503534(+)$1	263	153	172	8.5524
!!eeeeennnnneeeee22	chr22:46751244-46751589(+)$1	345	46	65	8.0503
!!ggggggglllggggggg	chr2:54197690-54197988(-)$1	298	253	272	7.9610
gggg[bbnnnnnbb]gggg	chr4:1805370-1805601(+)$1	231	119	138	10.0972
$ffffffnnnnnffffff4	chr2:61697693-61697962(-)$1	269	135	154	7.9595
fffff[ccclllccc]fff	chr14:23538691-23538929(-)$1	238	179	198	6.4502
ee[ddddnnnnndddd22e	chr2:27448985-27449246(+)$1	261	68	87	7.3703
gggggggnnnnnggggggg	chr13:107211681-107211958(-)$1	277	75	94	10.6671
egggggggmmmmggggggg	chr17:45755339-45755557(+)$1	218	111	130	7.1852
=ffffffooooooffffff	chr21:47565277-47565533(-)$1	256	188	207	6.6764
iiiiiiiillliiiiiiii	chr20:61594922-61595133(+)$1	211	178	197	7.6678
egggggggmmmmggggggg	chr17:45755311-45755539(+)$1	228	139	158	7.1852
FFggggggglllggggggg	chr8:618602-618873(-)$1	271	242	261	6.9787
=========lll=======	chr20:3194531-3194794(+)$1	263	86	105	8.0870
hhhhhhhnnnnnhhhhhhh	chr6:7579646-7579956(+)$1	310	153	172	8.2159
gggggggoooooogggggg	chr3:183882549-183882851(+)$1	302	117	136	8.7073
gggggggnnnnnggggggg	chr2:233740584-233740872(+)$1	288	21	40	10.6671
ccc[cccnnnnnccc]ccc	chr2:27720127-27720366(+)$1	239	111	130	9.1475
fffff[ccclllccc]fff	chr3:66023530-66023816(-)$1	286	155	174	6.4502
b[eeeeennnnneeeee]b	chr11:70644448-70644751(-)$1	303	242	261	7.8345
cc"""bbnnnnnbb22ccc	chr2:65658939-65659294(-)$1	355	72	91	8.0794
eeee!!annnnna]eeeee	chr17:7127062-7127296(+)$1	234	129	148	8.8677
d"""cccnnnnnccc333d	chr3:119217535-119217842(+)$1	307	110	129	8.5433
ff[ddddnnnnnddddfff	chr6:31507998-31508221(-)$1	223	150	169	7.8000
ggggg[bbmmmmbb]gggg	chr17:39975427-39975697(+)$1	270	137	156	6.5914

#otherMatches

#Seq PSSM
CAGCUGCGCCAGGCCCUGC	chr11:290938-291233(+)$1	295	19	38	8.7781
GGAUUGUCUGACACCAUCC	chr6:158475895-158476166(+)$1	271	169	188	7.5424
AAGACUGCAGGCCGGUAAC	chr17:7530780-7531109(-)$1	329	225	244	7.5832
CAUGAGGACAGACCGCAGG	chr14:74759762-74760043(-)$1	281	110	129	7.6474
AAUAGUUUUAUAACCUUUU	chr6:132199584-132199855(+)$1	271	74	93	5.9229
CCACGGCAUGCAGGUGUGG	chr12:132414477-132414768(+)$1	291	190	209	8.6888
GGCCAGCCAUCAGCUGGCC	chr9:117062804-117063053(+)$1	249	216	235	10.6671
GCGUCCUUUUACAGGAUGU	chr20:34220613-34220899(-)$1	286	142	161	10.6671
ACUCGGGAUGACUCCGACA	chr10:105386791-105387023(-)$1	232	135	154	8.3797
CCGUUUACGAGCUGAACGG	chr20:42086987-42087244(+)$1	257	57	76	8.2159
GUGGAGCGUUGAGCCUGGA	chr6:158480200-158480483(+)$1	283	236	255	8.7868
UAGGCACCACAAGGUGCUU	chr17:79954214-79954484(+)$1	270	38	57	7.3551
GCUGUAGGACUGCUGGAGG	chr14:39554916-39555182(-)$1	266	199	218	8.1943
CGGGGAUUCACCAUCCCCG	chr6:31698535-31698810(-)$1	275	48	67	10.6671
GCAGGCUAUUCUGACUGCA	chr14:24035133-24035392(-)$1	259	19	38	6.8119
ACUUGCGAGACUUCGUGAG	chr17:79969318-79969551(+)$1	233	106	125	7.1572
UGUGGGUCCUUGGCCUGCA	chr20:61594882-61595122(+)$1	240	218	237	7.6678
GACGGGAGACAGCGCGUCG	chr22:38902004-38902249(-)$1	245	87	106	6.8119
GGGCUCAACCACUGAGACU	chr5:176516793-176517026(+)$1	233	25	44	7.7067
UGCUGCCCUACGCGGAGCG	chr2:54197788-54198046(-)$1	258	234	253	7.7825
CAUGAAGAGCUGCCUUUAU	chr16:15127067-15127357(+)$1	290	83	102	6.3912
ugcuucaugaggguggggc	chr12:100934431-100934699(+)$1	268	218	237	7.3551
CUGCGGGUAGCCCCGCGCA	chr3:149374545-149374849(-)$1	304	60	79	10.0484
CAGAUGAGGAAAUCAAGCU	chr16:75270541-75270835(-)$1	294	201	220	8.6501
CAGCUUCAACCCGGAGCUG	chr17:73975010-73975276(-)$1	266	157	176	10.6671
GUGAGGGUGGAGCACUCUC	chr11:64681220-64681494(-)$1	274	137	156	7.5684
CAUGGUUUGCACUGGCCAU	chr1:146684699-146684996(-)$1	297	66	85	6.7361
CUGGGCUGACAUUGGCCCA	chr20:39791787-39792024(+)$1	237	134	153	8.7073
CCUGGGGUCUCUCCAUCAG	chr11:6503271-6503534(+)$1	263	153	172	8.5524
UUGGGGCCAGGUGCCCCUC	chr22:46751244-46751589(+)$1	345	46	65	8.0503
GUGCAGCUCCAAGAGCUGU	chr2:54197690-54197988(-)$1	298	253	272	7.9610
CGGGGAGUACACCUGCCUG	chr4:1805370-1805601(+)$1	231	119	138	10.0972
AUGUGCGAGAACUGCGCAG	chr2:61697693-61697962(-)$1	269	135	154	7.9595
AUUGCAGACCAAGUCAGCA	chr14:23538691-23538929(-)$1	238	179	198	6.4502
UGGUGGCCCCUAGCCAGAC	chr2:27448985-27449246(+)$1	261	68	87	7.3703
UUCUCCGAAGGGUGGAGGA	chr13:107211681-107211958(-)$1	277	75	94	10.6671
UCAGUGUUUGGUGAUAUUG	chr17:45755339-45755557(+)$1	218	111	130	7.1852
UUCACCGCCUACCUGGUGA	chr21:47565277-47565533(-)$1	256	188	207	6.6764
UGUGGGUCCUUGGCCUGCA	chr20:61594922-61595133(+)$1	211	178	197	7.6678
UCAGUGUUUGGUGAUAUUG	chr17:45755311-45755539(+)$1	228	139	158	7.1852
GAAAUGUUCCCAGAACAUU	chr8:618602-618873(-)$1	271	242	261	6.9787
CUUUGUGCUGCAGGUACAG	chr20:3194531-3194794(+)$1	263	86	105	8.0870
AAUCUGUGGAAGACAGAUU	chr6:7579646-7579956(+)$1	310	153	172	8.2159
GAGCUGGAGACCACCAGCU	chr3:183882549-183882851(+)$1	302	117	136	8.7073
GGCCCCGUCACCUGGGGCC	chr2:233740584-233740872(+)$1	288	21	40	10.6671
GGAGGGGCAAGCCCUGUCC	chr2:27720127-27720366(+)$1	239	111	130	9.1475
GGCGCGCCUUUGGGGGGCG	chr3:66023530-66023816(-)$1	286	155	174	6.4502
CAGGCCUAUCUCAGGCCCG	chr11:70644448-70644751(-)$1	303	242	261	7.8345
UCAGGCGAUCUCCGGAGAU	chr2:65658939-65659294(-)$1	355	72	91	8.0794
AAGGUACAGGACGGUCUUC	chr17:7127062-7127296(+)$1	234	129	148	8.8677
CUUUGCUGCCGAAGCUGUG	chr3:119217535-119217842(+)$1	307	110	129	8.5433
UCAUUGGGCUCUUUAAGGG	chr6:31507998-31508221(-)$1	223	150	169	7.8000
CGGCUGUGUCCGCAGAGCC	chr17:39975427-39975697(+)$1	270	137	156	6.5914

#DB
(((..((.....)).))))	chr11:290938-291233(+)$1	1	19	38	8.7781
((((.((.....)).))))	chr6:158475895-158476166(+)$1	1	169	188	7.5424
...((((.....)))).))	chr17:7530780-7531109(-)$1	1	225	244	7.5832
(.((.((.....)).))))	chr14:74759762-74760043(-)$1	1	110	129	7.6474
((..(((....)))..)))	chr6:132199584-132199855(+)$1	1	74	93	5.9229
(((((.(.....).)))))	chr12:132414477-132414768(+)$1	1	190	209	8.6888
(((((((.....)))))))	chr9:117062804-117063053(+)$1	1	216	235	10.6671
(((((((.....)))))))	chr20:34220613-34220899(-)$1	1	142	161	10.6671
..(((((.....))))).)	chr10:105386791-105387023(-)$1	1	135	154	8.3797
(((((((.....)))))))	chr20:42086987-42087244(+)$1	1	57	76	8.2159
.(((.((.....)))))..	chr6:158480200-158480483(+)$1	1	236	255	8.7868
.(((((((....)))))))	chr17:79954214-79954484(+)$1	1	38	57	7.3551
.((.(((.....))).)).	chr14:39554916-39555182(-)$1	1	199	218	8.1943
(((((((.....)))))))	chr6:31698535-31698810(-)$1	1	48	67	10.6671
((((.(......).)))))	chr14:24035133-24035392(-)$1	1	19	38	6.8119
)(((((((....)))))))	chr17:79969318-79969551(+)$1	1	106	125	7.1572
((((((((...))))))))	chr20:61594882-61595122(+)$1	1	218	237	7.6678
((((.(......).)))))	chr22:38902004-38902249(-)$1	1	87	106	6.8119
(((((((.....)))).))	chr5:176516793-176517026(+)$1	1	25	44	7.7067
((((.((......))))))	chr2:54197788-54198046(-)$1	1	234	253	7.7825
(((((((......))))))	chr16:15127067-15127357(+)$1	1	83	102	6.3912
.(((((((....)))))))	chr12:100934431-100934699(+)$1	1	218	237	7.3551
(((((((.....)).))))	chr3:149374545-149374849(-)$1	1	60	79	10.0484
(((.(((.....)))..))	chr16:75270541-75270835(-)$1	1	201	220	8.6501
(((((((.....)))))))	chr17:73975010-73975276(-)$1	1	157	176	10.6671
(.(((((((...)))))))	chr11:64681220-64681494(-)$1	1	137	156	7.5684
.((((((......))))))	chr1:146684699-146684996(-)$1	1	66	85	6.7361
(((((((......))))))	chr20:39791787-39792024(+)$1	1	134	153	8.7073
(((((((.....)).))))	chr11:6503271-6503534(+)$1	1	153	172	8.5524
..(((((.....)))))..	chr22:46751244-46751589(+)$1	1	46	65	8.0503
..(((((((...)))))))	chr2:54197690-54197988(-)$1	1	253	272	7.9610
((((.((.....)).))))	chr4:1805370-1805601(+)$1	1	119	138	10.0972
.((((((.....)))))).	chr2:61697693-61697962(-)$1	1	135	154	7.9595
(((((.(((...))).)))	chr14:23538691-23538929(-)$1	1	179	198	6.4502
((.((((.....))))..)	chr2:27448985-27449246(+)$1	1	68	87	7.3703
(((((((.....)))))))	chr13:107211681-107211958(-)$1	1	75	94	10.6671
)(((((((....)))))))	chr17:45755339-45755557(+)$1	1	111	130	7.1852
)((((((......))))))	chr21:47565277-47565533(-)$1	1	188	207	6.6764
((((((((...))))))))	chr20:61594922-61595133(+)$1	1	178	197	7.6678
)(((((((....)))))))	chr17:45755311-45755539(+)$1	1	139	158	7.1852
))(((((((...)))))))	chr8:618602-618873(-)$1	1	242	261	6.9787
(((((((((...)))))))	chr20:3194531-3194794(+)$1	1	86	105	8.0870
(((((((.....)))))))	chr6:7579646-7579956(+)$1	1	153	172	8.2159
(((((((......))))))	chr3:183882549-183882851(+)$1	1	117	136	8.7073
(((((((.....)))))))	chr2:233740584-233740872(+)$1	1	21	40	10.6671
(((.(((.....))).)))	chr2:27720127-27720366(+)$1	1	111	130	9.1475
(((((.(((...))).)))	chr3:66023530-66023816(-)$1	1	155	174	6.4502
(.(((((.....))))).)	chr11:70644448-70644751(-)$1	1	242	261	7.8345
((...((.....))..)))	chr2:65658939-65659294(-)$1	1	72	91	8.0794
((((..(.....).)))))	chr17:7127062-7127296(+)$1	1	129	148	8.8677
(...(((.....)))...)	chr3:119217535-119217842(+)$1	1	110	129	8.5433
((.((((.....)))))))	chr6:31507998-31508221(-)$1	1	150	169	7.8000
(((((.((....)).))))	chr17:39975427-39975697(+)$1	1	137	156	6.5914

#PSSM
g : 0.24	e : 0.16	f : 0.09	! : 0.07	[ : 0.07	h : 0.05	c : 0.05	d : 0.03	i : 0.03	b : 0.03	= : 0.03	# : 0.01	a : 0.01	$ : 0.01	F : 0.01	
g : 0.33	e : 0.13	f : 0.13	c : 0.07	[ : 0.05	! : 0.05	h : 0.05	i : 0.03	d : 0.01	# : 0.01	b : 0.01	F : 0.01	= : 0.01	" : 0.01	
g : 0.37	e : 0.16	f : 0.11	h : 0.05	c : 0.05	b : 0.03	i : 0.03	[ : 0.03	" : 0.03	d : 0.01	# : 0.01	! : 0.01	= : 0.01	
g : 0.37	e : 0.13	f : 0.11	d : 0.09	h : 0.05	[ : 0.05	! : 0.03	i : 0.03	" : 0.03	b : 0.01	c : 0.01	= : 0.01	
g : 0.33	[ : 0.13	f : 0.11	c : 0.09	d : 0.07	e : 0.07	h : 0.05	! : 0.03	i : 0.03	= : 0.01	" : 0.01	
g : 0.30	b : 0.16	c : 0.09	d : 0.07	[ : 0.07	e : 0.05	h : 0.05	f : 0.05	a : 0.03	i : 0.03	= : 0.01	! : 0.01	
g : 0.30	b : 0.18	c : 0.13	d : 0.07	e : 0.05	h : 0.05	f : 0.05	a : 0.03	o : 0.03	i : 0.03	= : 0.01	
n : 0.56	g : 0.15	o : 0.15	i : 0.03	c : 0.03	m : 0.01	= : 0.01	b : 0.01	
n : 0.56	o : 0.15	m : 0.13	g : 0.05	l : 0.03	c : 0.03	= : 0.01	
n : 0.56	o : 0.15	l : 0.15	m : 0.13	
n : 0.56	o : 0.15	l : 0.15	m : 0.13	
n : 0.56	o : 0.15	m : 0.11	l : 0.11	i : 0.03	c : 0.01	
g : 0.26	b : 0.16	c : 0.13	o : 0.11	d : 0.07	a : 0.07	e : 0.05	h : 0.03	i : 0.03	f : 0.01	= : 0.01	
g : 0.30	b : 0.18	c : 0.13	d : 0.07	] : 0.07	e : 0.05	h : 0.05	f : 0.05	i : 0.03	= : 0.01	
g : 0.30	] : 0.13	e : 0.13	c : 0.13	d : 0.07	h : 0.05	f : 0.05	2 : 0.03	i : 0.03	b : 0.01	= : 0.01	
g : 0.37	e : 0.15	d : 0.09	] : 0.07	f : 0.07	2 : 0.05	h : 0.05	i : 0.03	b : 0.01	c : 0.01	= : 0.01	3 : 0.01	
g : 0.39	e : 0.15	f : 0.13	h : 0.05	c : 0.05	] : 0.03	b : 0.03	i : 0.03	2 : 0.03	d : 0.01	= : 0.01	3 : 0.01	
g : 0.39	f : 0.15	e : 0.11	h : 0.05	c : 0.05	] : 0.03	3 : 0.03	i : 0.03	2 : 0.03	d : 0.01	a : 0.01	b : 0.01	= : 0.01	
g : 0.39	e : 0.13	f : 0.13	c : 0.07	d : 0.05	h : 0.05	i : 0.03	3 : 0.01	] : 0.01	2 : 0.01	4 : 0.01	= : 0.01	b : 0.01	

#score	430.95215495313215
#seq	53
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_transcript_m2_run1.txt

#BEAR
dddduuuuuuuuuuuuddd	chr5:134263344-134263577(+)$1	233	145	164	18.8945
^^^^^^^^^^^^^^^^bb]	chr11:65192414-65192682(+)$1	268	35	54	17.1805
[cccwwwwwwwwwwwwwwc	chr5:134263549-134263777(-)$1	228	19	38	19.0482
^^^^^^^^^^^^^^^^^^^	chrM:7783-7993(+)$1	210	153	172	17.6377
^^^^^^^^^^^^^^^^^^^	chrM:5311-5535(+)$1	224	43	62	17.6377
!!bbxxxxxxxxxxxxxxx	chr14:39649907-39650212(+)$1	305	117	136	16.2486
ddddwwwwwwwwwwwwwwd	chrM:516-744(+)$1	228	200	219	18.6032
eexxxxxxxxxxxxxxxee	chr22:50031489-50031760(-)$1	271	63	82	16.7490
ggggvvvvvvvvvvvvvgg	chr3:128214515-128214763(+)$1	248	74	93	18.9127
cccxxxxxxxxxxxxxxxc	chr8:9629516-9629787(+)$1	271	153	172	16.7140
^^^^^^^^^^^^^^^^^^^	chrM:9834-10051(+)$1	217	6	25	17.6377
^^^^^^^^^^^^^^^^bb]	chr5:134263533-134263749(-)$1	216	77	96	17.1805
yyyyyyyyyyyyyyyyeee	chr17:79878091-79878343(-)$1	252	227	246	19.2584
dddduuuuuuuuuuuuddd	chr6:32148374-32148640(+)$1	266	136	155	18.8945
ddddtttttttttttdddd	chrM:13132-13377(+)$1	245	91	110	16.0688
ddddtttttttttttdddd	chrM:492-714(+)$1	222	20	39	16.0688
^^^^^^^^^^^^^^^^^^^	chrM:3094-3320(+)$1	226	159	178	17.6377
hhhhwwwwwwwwwwwwwwh	chr8:1779375-1779605(+)$1	230	52	71	17.2888
eeeevvvvvvvvvvvvvee	chr6:153741534-153741749(+)$1	215	134	153	19.0072
ffffuuuuuuuuuuuufff	chr16:2564823-2565100(+)$1	277	206	225	18.4244
ii[auuuuuuuuuuuua]i	chr3:128211354-128211605(+)$1	251	63	82	19.6684
^^^^^^^^^^^^^^^^bb]	chr1:12642635-12642919(-)$1	284	69	88	17.1805
hhhhuuuuuuuuuuuuhhh	chr16:50903259-50903500(-)$1	241	57	76	17.0663
eewwwwwwwwwwwwwweee	chr10:18841394-18841667(-)$1	273	238	257	18.9893
ddddvvvvvvvvvvvvvdd	chr16:89041012-89041286(-)$1	274	252	271	18.9557
[a[attttttttttta]a]	chr19:47732204-47732452(-)$1	248	187	206	17.7898
ccccvvvvvvvvvvvvvcc	chr12:123995791-123996061(-)$1	270	217	236	19.4537
ffffuuuuuuuuuuuufff	chr19:4035620-4035979(+)$1	359	82	101	18.4244
^^^^^^^^^^^^^^^^^a]	chr19:47732769-47733014(-)$1	245	101	120	17.7706
ffffftttttttttttfff	chr19:34883001-34883281(+)$1	280	72	91	15.8228
dddduuuuuuuuuuuuddd	chr16:1425940-1426230(-)$1	290	18	37	18.8945
eewwwwwwwwwwwwwweee	chrX:152953652-152953892(+)$1	240	148	167	18.9893
==wwwwwwwwwwwwww===	chr17:56736448-56736732(-)$1	284	91	110	19.2086
yyyyyyyyyyyyyyyyfff	chr1:45244011-45244219(+)$1	208	179	198	19.1165
=====ttttttttttt===	chr14:76070447-76070698(+)$1	251	104	123	16.7530
eeeeuuuuuuuuuuuueee	chr16:88959377-88959637(-)$1	260	107	126	18.9631
^^^^^^^^^^^^^^^^^^^	chrM:15566-15817(+)$1	251	59	78	17.6377
a[bbuuuuuuuuuuuubb]	chr6:31698293-31698552(-)$1	259	214	233	19.4306
eeeeettttttttttteee	chr19:34882841-34883098(+)$1	257	232	251	16.4077
^^^^^^^^^^^^^^^^^ff	chr14:32953278-32953517(-)$1	239	196	215	17.3815
dddduuuuuuuuuuuuddd	chr3:128211661-128211906(+)$1	245	26	45	18.8945
ebbbbtttttttttttbb]	chr5:647964-648236(+)$1	272	183	202	16.4305
a[avvvvvvvvvvvvva]a	chr22:49975090-49975348(-)$1	258	55	74	19.9945
yyyyyyyyyyyyyyyyfff	chr11:65349570-65349830(+)$1	260	99	118	19.1165
[ddddtttttttttttddd	chr1:31440908-31441173(-)$1	265	120	139	16.4195
bcccvvvvvvvvvvvvvcc	chr8:9629593-9629971(+)$1	378	36	55	19.2610
^^^^^^^^^^^^^^^^^^e	chrM:8440-8650(+)$1	210	157	176	17.7138
[bbbbtttttttttttbb]	chr11:65190630-65190889(+)$1	259	221	240	16.5198
^^^^^^^^^^^^^^^^fff	chr1:28833970-28834188(+)$1	218	147	166	16.9102
^^^^^^^^^^^^^^^^bb:	chr5:99385861-99386118(-)$1	257	38	57	16.1738
^^^^^^^^^^^^^^^^ccc	chrM:10804-11048(+)$1	244	86	105	17.2583
cccvvvvvvvvvvvvvccc	chr12:133272015-133272270(+)$1	255	95	114	19.5405
dd[bbtttttttttttbb]	chr7:932578-932820(+)$1	242	71	90	16.6847
yyyyyyyyyyyyyyyyiii	chrM:6473-6699(+)$1	226	161	180	19.1887
^^^^^^^^^^^^^^^^fff	chr7:111928873-111929110(+)$1	237	143	162	16.9102
[ddddtttttttttttddd	chrM:15821-16029(+)$1	208	39	58	16.4195
hhhhwwwwwwwwwwwwwwh	chr8:1779301-1779528(+)$1	227	126	145	17.2888
bbwwwwwwwwwwwwwwbb:	chrM:7777-7983(+)$1	206	37	56	17.7886
^^^^^^^^^^^^^^^^^^e	chrM:9779-9999(+)$1	220	71	90	17.7138
e!!bbtttttttttttbb2	chr2:61764458-61764677(-)$1	219	130	149	16.8056
a[ccctttttttttttccc	chr16:89019104-89019367(-)$1	263	150	169	17.3669
^^^^^^^^^^^^^^^^^^^	chr3:128214312-128214557(+)$1	245	13	32	17.6377
^^^^^^^^^^^^^^^^^^e	chrM:9720-9938(+)$1	218	130	149	17.7138
eewwwwwwwwwwwwwweee	chrM:9490-9751(+)$1	261	34	53	18.9893
b!!auuuuuuuuuuuua22	chr10:35759136-35759421(+)$1	285	118	137	19.5441
^^^^^^^^^^^^^^^^ccc	chrM:10710-10947(+)$1	237	26	45	17.2583
^^^^^^^^^^^^^^^^^^h	chr22:50029057-50029283(-)$1	226	62	81	17.5245
eeeevvvvvvvvvvvvvee	chr4:6998916-6999157(+)$1	241	70	89	19.0072
^^^^^^^^^^^^^^^^ccc	chrM:10747-10956(+)$1	209	38	57	17.2583
a[bb^^^^^^^^^^^^^^^	chr16:88586158-88586424(+)$1	266	163	182	16.0301
gggwwwwwwwwwwwwwwgg	chr9:136133063-136133291(-)$1	228	15	34	18.9554
ddddwwwwwwwwwwwwwwd	chr19:10407089-10407336(+)$1	247	178	197	18.6032
hhbbuuuuuuuuuuuubb2	chr1:47697054-47697300(-)$1	246	144	163	18.3187
ddddtttttttttttdddd	chrM:14222-14444(-)$1	222	199	218	16.0688

#otherMatches

#Seq PSSM
UGCCAUGAUUGUGAGGGGC	chr5:134263344-134263577(+)$1	233	145	164	18.8945
GAAGAAGGGGAGAGGGUUG	chr11:65192414-65192682(+)$1	268	35	54	17.1805
CUAGACUACGUACAUAACC	chr5:134263549-134263777(-)$1	228	19	38	19.0482
CUUCAACUCCUACAUACUU	chrM:7783-7993(+)$1	210	153	172	17.6377
CCUAAUCUACUCCACCUCA	chrM:5311-5535(+)$1	224	43	62	17.6377
agguaagggaaagugagaa	chr14:39649907-39650212(+)$1	305	117	136	16.2486
GUGAGUUCACCCUCUAAAU	chrM:516-744(+)$1	228	200	219	18.6032
uuguuccugacucccgugg	chr22:50031489-50031760(-)$1	271	63	82	16.7490
GGGCCUUUUCUACUUCUGU	chr3:128214515-128214763(+)$1	248	74	93	18.9127
ccaggcaagaauuauuaau	chr8:9629516-9629787(+)$1	271	153	172	16.7140
UCAACUUUCCUCACUAUCU	chrM:9834-10051(+)$1	217	6	25	17.6377
AAAAAACACAUAAUUUGAA	chr5:134263533-134263749(-)$1	216	77	96	17.1805
UGAAAAUGGAAAUAUUGGC	chr17:79878091-79878343(-)$1	252	227	246	19.2584
AGUGCUUCCGCCCCCUCAC	chr6:32148374-32148640(+)$1	266	136	155	18.8945
AUGACAUCAAAAAAAUCGU	chrM:13132-13377(+)$1	245	91	110	16.0688
CAGCACACACACACCGCUG	chrM:492-714(+)$1	222	20	39	16.0688
ucgcauaaaacuuaaaacu	chrM:3094-3320(+)$1	226	159	178	17.6377
CCGUGGAGGGACAGUGUGA	chr8:1779375-1779605(+)$1	230	52	71	17.2888
UCUUAAAUUUUAUAAACAG	chr6:153741534-153741749(+)$1	215	134	153	19.0072
AGGGGUGAAUGAAUGACCU	chr16:2564823-2565100(+)$1	277	206	225	18.4244
GGGCGGCCGAGACAAAGGC	chr3:128211354-128211605(+)$1	251	63	82	19.6684
gggauggauggaugaagug	chr1:12642635-12642919(-)$1	284	69	88	17.1805
ucuuaugaaccuaagcagg	chr16:50903259-50903500(-)$1	241	57	76	17.0663
GUGAAUGCAAAGGAAAACU	chr10:18841394-18841667(-)$1	273	238	257	18.9893
CAGUAAUAUUUCUAAAAGC	chr16:89041012-89041286(-)$1	274	252	271	18.9557
GGGGUGUGUGUGUAUUGUG	chr19:47732204-47732452(-)$1	248	187	206	17.7898
acagacauacacucacacu	chr12:123995791-123996061(-)$1	270	217	236	19.4537
GUGCACACCCACACCCGCA	chr19:4035620-4035979(+)$1	359	82	101	18.4244
UGUGUGUGUUGGGUCUGAG	chr19:47732769-47733014(-)$1	245	101	120	17.7706
CUCAGUCUGUCAAUUUCUG	chr19:34883001-34883281(+)$1	280	72	91	15.8228
CCUUGGAGUGAGGGAGGAG	chr16:1425940-1426230(-)$1	290	18	37	18.8945
GAUUCUUCAGGCUCACUUU	chrX:152953652-152953892(+)$1	240	148	167	18.9893
cuguugguccugauaaagu	chr17:56736448-56736732(-)$1	284	91	110	19.2086
AGAGGUUUGGGUAGGGCCA	chr1:45244011-45244219(+)$1	208	179	198	19.1165
guuugaucucggaagcuaa	chr14:76070447-76070698(+)$1	251	104	123	16.7530
CCAGAGGUGAUGGUAGCUG	chr16:88959377-88959637(-)$1	260	107	126	18.9631
CCUAUUACUAUCCAUCCUC	chrM:15566-15817(+)$1	251	59	78	17.6377
CGACAUGGAAUGAGGGGUG	chr6:31698293-31698552(-)$1	259	214	233	19.4306
CUCAGUCUGUCAAUUUCUG	chr19:34882841-34883098(+)$1	257	232	251	16.4077
UUCUAUACCAACACCuauc	chr14:32953278-32953517(-)$1	239	196	215	17.3815
ggccgggggcgggAAGGGC	chr3:128211661-128211906(+)$1	245	26	45	18.8945
UGGCCGAUGAUAUCCAGGA	chr5:647964-648236(+)$1	272	183	202	16.4305
gguggaugaauagaugagu	chr22:49975090-49975348(-)$1	258	55	74	19.9945
AGAAGUGAGGGGUGGAGCA	chr11:65349570-65349830(+)$1	260	99	118	19.1165
CUUAGACUAUAGUUCACUG	chr1:31440908-31441173(-)$1	265	120	139	16.4195
ggaGGGAUGACAugggacu	chr8:9629593-9629971(+)$1	378	36	55	19.2610
UUCUAUUUCCCCCUCUAUU	chrM:8440-8650(+)$1	210	157	176	17.7138
GUGGUAUGUAAUUUUCGCU	chr11:65190630-65190889(+)$1	259	221	240	16.5198
uuuuuuuuuuuuuuuugga	chr1:28833970-28834188(+)$1	218	147	166	16.9102
CUAAACCUACUCCAAUGCU	chr5:99385861-99386118(-)$1	257	38	57	16.1738
AAAUCAACAACAACCUAUU	chrM:10804-11048(+)$1	244	86	105	17.2583
ccuaacauaugagauaagg	chr12:133272015-133272270(+)$1	255	95	114	19.5405
CAGGUGAGGGguguaggcg	chr7:932578-932820(+)$1	242	71	90	16.6847
AUAUUCUUAUCCUACCAGG	chrM:6473-6699(+)$1	226	161	180	19.1887
aaaaaaaaaaaaaaaaaag	chr7:111928873-111929110(+)$1	237	143	162	16.9102
AUUGAAAACAAAAUACUCA	chrM:15821-16029(+)$1	208	39	58	16.4195
CCGUGGAGGGACAGUGUGA	chr8:1779301-1779528(+)$1	227	126	145	17.2888
GCCCUCCCAUCCCUACGCA	chrM:7777-7983(+)$1	206	37	56	17.7886
UCACUAUCUGCUUCAUCCG	chrM:9779-9999(+)$1	220	71	90	17.7138
GAGCCUGCGAUUGAAUGGA	chr2:61764458-61764677(-)$1	219	130	149	16.8056
AGGGAGAACACAGAGAUCC	chr16:89019104-89019367(-)$1	263	150	169	17.3669
UCACACACCAUCCAGACCU	chr3:128214312-128214557(+)$1	245	13	32	17.6377
UCACUAUCUGCUUCAUCCG	chrM:9720-9938(+)$1	218	130	149	17.7138
AGCCCCUACCCCCCAACUA	chrM:9490-9751(+)$1	261	34	53	18.9893
ggacagggagauggaggga	chr10:35759136-35759421(+)$1	285	118	137	19.5441
CGUACAUAACCUAAACCUA	chrM:10710-10947(+)$1	237	26	45	17.2583
CAAACAAUUCCAAAACAAU	chr22:50029057-50029283(-)$1	226	62	81	17.5245
agucgucaaccuuccaaga	chr4:6998916-6999157(+)$1	241	70	89	19.0072
UUAUAUUACUACCACUGAC	chrM:10747-10956(+)$1	209	38	57	17.2583
gguagauggauagauggau	chr16:88586158-88586424(+)$1	266	163	182	16.0301
UGUUCUCCAAAGCCCCUGC	chr9:136133063-136133291(-)$1	228	15	34	18.9554
CGCCAUACAGCUGACAUCG	chr19:10407089-10407336(+)$1	247	178	197	18.6032
GUGCUAGGUGGUGUUUGUU	chr1:47697054-47697300(-)$1	246	144	163	18.3187
GCUUUGUAUGAUUAUGGGC	chrM:14222-14444(-)$1	222	199	218	16.0688

#DB
((((............)))	chr5:134263344-134263577(+)$1	1	145	164	18.8945
................)).	chr11:65192414-65192682(+)$1	1	35	54	17.1805
.(((..............)	chr5:134263549-134263777(-)$1	1	19	38	19.0482
...................	chrM:7783-7993(+)$1	1	153	172	17.6377
...................	chrM:5311-5535(+)$1	1	43	62	17.6377
..((...............	chr14:39649907-39650212(+)$1	1	117	136	16.2486
((((..............)	chrM:516-744(+)$1	1	200	219	18.6032
((...............))	chr22:50031489-50031760(-)$1	1	63	82	16.7490
((((.............))	chr3:128214515-128214763(+)$1	1	74	93	18.9127
(((...............)	chr8:9629516-9629787(+)$1	1	153	172	16.7140
...................	chrM:9834-10051(+)$1	1	6	25	17.6377
................)).	chr5:134263533-134263749(-)$1	1	77	96	17.1805
................)))	chr17:79878091-79878343(-)$1	1	227	246	19.2584
((((............)))	chr6:32148374-32148640(+)$1	1	136	155	18.8945
((((...........))))	chrM:13132-13377(+)$1	1	91	110	16.0688
((((...........))))	chrM:492-714(+)$1	1	20	39	16.0688
...................	chrM:3094-3320(+)$1	1	159	178	17.6377
((((..............)	chr8:1779375-1779605(+)$1	1	52	71	17.2888
((((.............))	chr6:153741534-153741749(+)$1	1	134	153	19.0072
((((............)))	chr16:2564823-2565100(+)$1	1	206	225	18.4244
((.(............).)	chr3:128211354-128211605(+)$1	1	63	82	19.6684
................)).	chr1:12642635-12642919(-)$1	1	69	88	17.1805
((((............)))	chr16:50903259-50903500(-)$1	1	57	76	17.0663
((..............)))	chr10:18841394-18841667(-)$1	1	238	257	18.9893
((((.............))	chr16:89041012-89041286(-)$1	1	252	271	18.9557
.(.(...........).).	chr19:47732204-47732452(-)$1	1	187	206	17.7898
)(((.............))	chr12:123995791-123996061(-)$1	1	217	236	19.4537
((((............)))	chr19:4035620-4035979(+)$1	1	82	101	18.4244
.................).	chr19:47732769-47733014(-)$1	1	101	120	17.7706
(((((...........)))	chr19:34883001-34883281(+)$1	1	72	91	15.8228
((((............)))	chr16:1425940-1426230(-)$1	1	18	37	18.8945
((..............)))	chrX:152953652-152953892(+)$1	1	148	167	18.9893
((..............)))	chr17:56736448-56736732(-)$1	1	91	110	19.2086
................)))	chr1:45244011-45244219(+)$1	1	179	198	19.1165
(((((...........)))	chr14:76070447-76070698(+)$1	1	104	123	16.7530
((((............)))	chr16:88959377-88959637(-)$1	1	107	126	18.9631
...................	chrM:15566-15817(+)$1	1	59	78	17.6377
(.((............)).	chr6:31698293-31698552(-)$1	1	214	233	19.4306
(((((...........)))	chr19:34882841-34883098(+)$1	1	232	251	16.4077
.................))	chr14:32953278-32953517(-)$1	1	196	215	17.3815
((((............)))	chr3:128211661-128211906(+)$1	1	26	45	18.8945
)((((...........)).	chr5:647964-648236(+)$1	1	183	202	16.4305
(.(.............).)	chr22:49975090-49975348(-)$1	1	55	74	19.9945
................)))	chr11:65349570-65349830(+)$1	1	99	118	19.1165
.((((...........)))	chr1:31440908-31441173(-)$1	1	120	139	16.4195
((((.............))	chr8:9629593-9629971(+)$1	1	36	55	19.2610
..................)	chrM:8440-8650(+)$1	1	157	176	17.7138
.((((...........)).	chr11:65190630-65190889(+)$1	1	221	240	16.5198
................)))	chr1:28833970-28834188(+)$1	1	147	166	16.9102
................)).	chr5:99385861-99386118(-)$1	1	38	57	16.1738
................)))	chrM:10804-11048(+)$1	1	86	105	17.2583
(((.............)))	chr12:133272015-133272270(+)$1	1	95	114	19.5405
((.((...........)).	chr7:932578-932820(+)$1	1	71	90	16.6847
................)))	chrM:6473-6699(+)$1	1	161	180	19.1887
................)))	chr7:111928873-111929110(+)$1	1	143	162	16.9102
.((((...........)))	chrM:15821-16029(+)$1	1	39	58	16.4195
((((..............)	chr8:1779301-1779528(+)$1	1	126	145	17.2888
((..............)).	chrM:7777-7983(+)$1	1	37	56	17.7886
..................)	chrM:9779-9999(+)$1	1	71	90	17.7138
(..((...........)).	chr2:61764458-61764677(-)$1	1	130	149	16.8056
(.(((...........)))	chr16:89019104-89019367(-)$1	1	150	169	17.3669
...................	chr3:128214312-128214557(+)$1	1	13	32	17.6377
..................)	chrM:9720-9938(+)$1	1	130	149	17.7138
((..............)))	chrM:9490-9751(+)$1	1	34	53	18.9893
(..(............)..	chr10:35759136-35759421(+)$1	1	118	137	19.5441
................)))	chrM:10710-10947(+)$1	1	26	45	17.2583
..................)	chr22:50029057-50029283(-)$1	1	62	81	17.5245
((((.............))	chr4:6998916-6999157(+)$1	1	70	89	19.0072
................)))	chrM:10747-10956(+)$1	1	38	57	17.2583
(.((...............	chr16:88586158-88586424(+)$1	1	163	182	16.0301
(((..............))	chr9:136133063-136133291(-)$1	1	15	34	18.9554
((((..............)	chr19:10407089-10407336(+)$1	1	178	197	18.6032
((((............)).	chr1:47697054-47697300(-)$1	1	144	163	18.3187
((((...........))))	chrM:14222-14444(-)$1	1	199	218	16.0688

#PSSM
^ : 0.28	d : 0.14	e : 0.13	[ : 0.06	y : 0.05	h : 0.05	a : 0.05	c : 0.04	f : 0.04	b : 0.04	g : 0.02	= : 0.02	! : 0.01	i : 0.01	
^ : 0.28	d : 0.17	e : 0.10	c : 0.06	y : 0.05	h : 0.05	[ : 0.05	! : 0.04	f : 0.04	b : 0.04	g : 0.02	= : 0.02	i : 0.01	a : 0.01	
^ : 0.28	d : 0.16	c : 0.08	b : 0.08	w : 0.06	y : 0.05	e : 0.05	h : 0.04	f : 0.04	[ : 0.04	g : 0.02	! : 0.02	x : 0.01	= : 0.01	a : 0.01	
^ : 0.28	d : 0.16	b : 0.10	w : 0.08	c : 0.05	y : 0.05	e : 0.05	h : 0.04	f : 0.04	a : 0.04	x : 0.02	v : 0.02	g : 0.01	= : 0.01	
^ : 0.29	u : 0.16	w : 0.14	v : 0.10	y : 0.05	t : 0.05	b : 0.05	x : 0.04	d : 0.02	f : 0.01	= : 0.01	e : 0.01	c : 0.01	
^ : 0.29	t : 0.18	u : 0.16	w : 0.14	v : 0.10	y : 0.05	x : 0.04	
^ : 0.29	t : 0.18	u : 0.16	w : 0.14	v : 0.10	y : 0.05	x : 0.04	
^ : 0.29	t : 0.18	u : 0.16	w : 0.14	v : 0.10	y : 0.05	x : 0.04	
^ : 0.29	t : 0.18	u : 0.16	w : 0.14	v : 0.10	y : 0.05	x : 0.04	
^ : 0.29	t : 0.18	u : 0.16	w : 0.14	v : 0.10	y : 0.05	x : 0.04	
^ : 0.29	t : 0.18	u : 0.16	w : 0.14	v : 0.10	y : 0.05	x : 0.04	
^ : 0.29	t : 0.18	u : 0.16	w : 0.14	v : 0.10	y : 0.05	x : 0.04	
^ : 0.29	t : 0.18	u : 0.16	w : 0.14	v : 0.10	y : 0.05	x : 0.04	
^ : 0.29	t : 0.18	u : 0.16	w : 0.14	v : 0.10	y : 0.05	x : 0.04	
^ : 0.29	t : 0.18	u : 0.16	w : 0.14	v : 0.10	y : 0.05	x : 0.04	
^ : 0.29	u : 0.16	w : 0.14	t : 0.13	v : 0.10	y : 0.05	x : 0.04	d : 0.04	a : 0.01	
^ : 0.17	b : 0.14	d : 0.12	f : 0.09	w : 0.08	v : 0.08	e : 0.08	c : 0.06	x : 0.04	a : 0.04	= : 0.02	h : 0.01	] : 0.01	i : 0.01	
b : 0.14	^ : 0.14	d : 0.13	e : 0.12	f : 0.10	c : 0.09	w : 0.06	x : 0.02	g : 0.02	] : 0.02	a : 0.02	= : 0.02	h : 0.01	i : 0.01	2 : 0.01	
d : 0.16	e : 0.16	] : 0.12	c : 0.12	f : 0.10	^ : 0.09	h : 0.05	2 : 0.04	g : 0.02	i : 0.02	= : 0.02	: : 0.02	x : 0.01	a : 0.01	

#score	1322.3100425638665
#seq	74
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_CDS_m1_run1.txt

#BEAR
!!eeeee[eeeeemmmmeeeeeeeeee2	chr2:58386562-58386816(-)$1	254	61	89	11.0308
[ccc!!ddddoooooodddd22ccc]dd	chr8:42914098-42914360(+)$1	262	71	99	11.5947
gggggg[ccc[allla]ccc]ggggggg	chr12:123997759-123998014(-)$1	255	182	210	10.4254
eee####ddddooooooddddeeeee]e	chr10:133769218-133769496(+)$1	278	176	204	12.6939
!!eeeee[eeeeemmmmeeeeeeeeee2	chr2:58386616-58386852(-)$1	236	97	125	11.0308
eee[a[a[bboooooobb]a22a]eeee	chr20:31052641-31052903(-)$1	262	96	124	12.3407
eeeee"""cccooooooccc4444eeee	chrX:53222168-53222472(-)$1	304	66	94	14.9025
c[eeeee"""cccmmmmccc333eeeee	chr10:133769016-133769312(+)$1	296	102	130	13.6677
##dddd[ddddoooooodddd333dddd	chr8:95403850-95404112(-)$1	262	126	154	12.6200
eeeee[ccc!!ccclllccc22ccceee	chr19:4037221-4037484(+)$1	263	188	216	12.5418
[iiiiiiiiicccmmmmccc]iiiiiii	chr16:2821324-2821616(+)$1	292	243	271	10.7079
gggg==========lll==========:	chr17:26988771-26989098(-)$1	327	157	185	9.5809
[eeeee[ddddnnnnndddd333eeeee	chr15:49620634-49620945(+)$1	311	240	268	13.3247
feeeee[a!!cccmmmmccc22a]eeee	chr12:9220167-9220403(-)$1	236	67	95	13.7490
#eeeee[ddddoooooodddd22eeeee	chr14:71540090-71540388(+)$1	298	76	104	14.8839

#otherMatches

#Seq PSSM
GCGUUUGUCUCUUCACUAAGAGUAAACU	chr2:58386562-58386816(-)$1	254	61	89	11.0308
AACACUAGAGUCCCUUUUCUUCUGUAUU	chr8:42914098-42914360(+)$1	262	71	99	11.5947
GGAGUUUGUGGCUUUGGCACUGACUUCU	chr12:123997759-123998014(-)$1	255	182	210	10.4254
GCACCCCGUGGACAAUGUCAUUGCCGUG	chr10:133769218-133769496(+)$1	278	176	204	12.6939
GCGUUUGUCUCUUCACUAAGAGUAAACU	chr2:58386616-58386852(-)$1	236	97	125	11.0308
AGGGGAAGAUCUAGGUGUGUGACGUCUA	chr20:31052641-31052903(-)$1	262	96	124	12.3407
GAGCUAGAGCCAAAGAGGGUACGGAGCU	chrX:53222168-53222472(-)$1	304	66	94	14.9025
GUGGGGUCUGAGUCCUUGCUGCCGCUCC	chr10:133769016-133769312(+)$1	296	102	130	13.6677
CUACAGAUUGAGCUUUAUCGAAAGCUGU	chr8:95403850-95404112(-)$1	262	126	154	12.6200
ACGAGAUCGAGUACCUGGUGGACGGCUC	chr19:4037221-4037484(+)$1	263	188	216	12.5418
UUCUGCUCUUGGCCAUCGUCUGGGAGUG	chr16:2821324-2821616(+)$1	292	243	271	10.7079
GGGGCCGAGUUUUCUUCGAAGAUUUGGG	chr17:26988771-26989098(-)$1	327	157	185	9.5809
AUGAAAAUAAUACAUGAUUAAAGUUUCA	chr15:49620634-49620945(+)$1	311	240	268	13.3247
CUUGAUGAAUAAACACUUUUUCUGGUCA	chr12:9220167-9220403(-)$1	236	67	95	13.7490
AAUAUGUAUUUUUUUCUAAAUCUUAUGU	chr14:71540090-71540388(+)$1	298	76	104	14.8839

#DB
..(((((.(((((....)))))))))).	chr2:58386562-58386816(-)$1	1	61	89	11.0308
.(((..((((......))))..))).))	chr8:42914098-42914360(+)$1	1	71	99	11.5947
((((((.(((.(...).))).)))))))	chr12:123997759-123998014(-)$1	1	182	210	10.4254
(((....((((......))))))))).)	chr10:133769218-133769496(+)$1	1	176	204	12.6939
..(((((.(((((....)))))))))).	chr2:58386616-58386852(-)$1	1	97	125	11.0308
(((.(.(.((......)).)..).))))	chr20:31052641-31052903(-)$1	1	96	124	12.3407
(((((...(((......)))....))))	chrX:53222168-53222472(-)$1	1	66	94	14.9025
(.(((((...(((....)))...)))))	chr10:133769016-133769312(+)$1	1	102	130	13.6677
..((((.((((......))))...))))	chr8:95403850-95404112(-)$1	1	126	154	12.6200
(((((.(((..(((...)))..))))))	chr19:4037221-4037484(+)$1	1	188	216	12.5418
.((((((((((((....))).)))))))	chr16:2821324-2821616(+)$1	1	243	271	10.7079
))))((((((((((...)))))))))).	chr17:26988771-26989098(-)$1	1	157	185	9.5809
.(((((.((((.....))))...)))))	chr15:49620634-49620945(+)$1	1	240	268	13.3247
((((((.(..(((....)))..).))))	chr12:9220167-9220403(-)$1	1	67	95	13.7490
.(((((.((((......))))..)))))	chr14:71540090-71540388(+)$1	1	76	104	14.8839

#PSSM
e : 0.26	[ : 0.20	! : 0.13	g : 0.13	# : 0.13	c : 0.06	f : 0.06	
e : 0.46	! : 0.13	g : 0.13	c : 0.06	[ : 0.06	# : 0.06	i : 0.06	
e : 0.66	g : 0.13	c : 0.06	d : 0.06	i : 0.06	
e : 0.53	g : 0.13	c : 0.06	# : 0.06	[ : 0.06	d : 0.06	i : 0.06	
e : 0.53	! : 0.06	g : 0.06	# : 0.06	a : 0.06	d : 0.06	i : 0.06	= : 0.06	
e : 0.39	[ : 0.13	! : 0.06	g : 0.06	# : 0.06	" : 0.06	d : 0.06	i : 0.06	= : 0.06	
[ : 0.33	e : 0.20	d : 0.06	# : 0.06	a : 0.06	" : 0.06	c : 0.06	i : 0.06	= : 0.06	
d : 0.33	[ : 0.20	c : 0.13	" : 0.13	i : 0.06	= : 0.06	a : 0.06	
d : 0.33	c : 0.20	e : 0.13	b : 0.06	" : 0.06	i : 0.06	= : 0.06	! : 0.06	
d : 0.33	e : 0.13	c : 0.13	! : 0.13	b : 0.06	" : 0.06	i : 0.06	= : 0.06	
d : 0.26	c : 0.26	e : 0.13	o : 0.13	[ : 0.06	! : 0.06	= : 0.06	
o : 0.39	c : 0.26	e : 0.13	a : 0.06	= : 0.06	n : 0.06	
o : 0.39	c : 0.26	e : 0.13	l : 0.06	= : 0.06	n : 0.06	
o : 0.39	m : 0.33	l : 0.06	c : 0.06	= : 0.06	n : 0.06	
o : 0.39	m : 0.33	l : 0.20	n : 0.06	
o : 0.39	m : 0.33	l : 0.13	a : 0.06	n : 0.06	
m : 0.33	o : 0.26	d : 0.13	l : 0.13	] : 0.06	b : 0.06	
c : 0.39	d : 0.33	e : 0.13	b : 0.06	= : 0.06	
c : 0.39	d : 0.33	e : 0.13	] : 0.06	= : 0.06	
c : 0.39	d : 0.33	e : 0.13	a : 0.06	= : 0.06	
2 : 0.26	d : 0.20	e : 0.13	] : 0.13	3 : 0.13	4 : 0.06	= : 0.06	
2 : 0.33	e : 0.20	3 : 0.20	g : 0.06	4 : 0.06	i : 0.06	= : 0.06	
e : 0.20	3 : 0.20	c : 0.13	a : 0.13	g : 0.06	4 : 0.06	i : 0.06	= : 0.06	2 : 0.06	
e : 0.39	c : 0.13	] : 0.13	g : 0.06	4 : 0.06	3 : 0.06	i : 0.06	= : 0.06	
e : 0.60	c : 0.13	g : 0.06	d : 0.06	i : 0.06	= : 0.06	
e : 0.66	] : 0.06	g : 0.06	d : 0.06	i : 0.06	= : 0.06	
e : 0.60	d : 0.13	g : 0.06	] : 0.06	i : 0.06	= : 0.06	
e : 0.53	2 : 0.13	d : 0.13	g : 0.06	i : 0.06	: : 0.06	

#score	185.09546429676678
#seq	15
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_transcript_m2_run2.txt

#BEAR
gggggg[ccc[cccooooooccc]ccc]gggggg	chr7:6056495-6056729(+)$1	234	25	59	17.2891
!eeeee[dddd[bboooooobb]ddddeeeee]b	chr3:183171575-183171780(+)$1	205	107	141	13.3493
[a$$$$$gggggggooooooggggggg4444ahh	chr1:93306257-93306459(+)$1	202	100	134	14.3577
========[eeeeeooooooeeeee=========	chr12:133112760-133113045(+)$1	285	187	221	15.0130
!eeeee[dddd[bboooooobb]ddddeeeee]b	chr3:183171629-183171836(+)$1	207	53	87	13.3493
f!!ggggggg[cccccclllccc]ccc]gggggg	chr11:62432887-62433098(+)$1	211	16	50	13.4553
::dddd[gggggggooooooggggggg]dddd:=	chr17:79112641-79112893(-)$1	252	32	66	13.0516
"ccc[accc[ggggggglllggggggg]ccc]a]	chr5:138614503-138614714(+)$1	211	114	148	12.2302
fffff[dddd[cccoooooocccddddffffff4	chr3:39449793-39450000(+)$1	207	166	200	14.1559
gggggg[ccc[cccooooooccc]ccc]gggggg	chr7:6056407-6056613(+)$1	206	113	147	17.2891
::dddd[gggggggooooooggggggg]ddddcc	chr3:186505018-186505226(+)$1	208	151	185	13.8908
iiiiiiiii!!eeeeellleeeeeiiiiiiiii2	chr12:7076570-7076806(-)$1	236	161	195	11.0071
dddbbccc!!ddddoooooodddd22ccc333bb	chr4:119200290-119200494(+)$1	204	131	165	11.9386
"ccc[accc[ggggggglllggggggg]ccc]a]	chr5:138614534-138614740(+)$1	206	83	117	12.2302
"""ggggggg[cccccclllccc]ccc]gggggg	chr11:62432882-62433087(+)$1	205	21	55	13.6901
ffff[dddd"""bboooooobb333dddd]ffff	chr16:81583404-81583681(+)$1	277	227	261	13.5253
Cgggggggffffffooooooffffff333ggggg	chr3:48466992-48467273(-)$1	281	244	278	14.0454
[ccc[a!!bb[a[aooooooa]a]bb22a]cccc	chr13:26828267-26828520(+)$1	253	93	127	14.1916
"""eeeee####bboooooobb333eeeee333b	chr7:158055454-158055792(-)$1	338	284	318	14.3222
gggggg!!bb[cccooooooccc]bb22gggggg	chr11:70610683-70611044(-)$1	361	263	297	15.7988
##dddd!!ffffffooooooffffff22dddd22	chr17:58308798-58309012(-)$1	214	18	52	13.3123
bb"""a[gggggggooooooggggggg]a333bb	chr2:240202261-240202573(-)$1	312	195	229	15.8338
ee[adddd!!cccaooooooa]ccc]dddd]a]e	chr18:77670999-77671286(-)$1	287	223	257	13.6971
eee[a!!gggggggooooooggggggg]aeeeee	chr19:7704922-7705187(+)$1	265	193	227	16.0419
==========[bb[bblllbb]bb]=========	chr3:12881809-12882049(-)$1	240	18	52	11.0102
""ffffff!!ddddoooooodddd22ffffff33	chr11:117680484-117680775(-)$1	291	28	62	13.4415
cc]ddddgggggggoooooogggggggeeeeebb	chr14:95999674-95999878(-)$1	204	144	178	14.8376
eeeee!!gggggggooooooggggggg]eeeee9	chr1:28906867-28907071(-)$1	204	55	89	15.7632
ggg####bb[ddddoooooodddd]bb22ggggg	chr2:236420435-236420721(+)$1	286	50	84	12.8634
dd]iiiiiiiiicccnnnnnccciiiiiiiiidd	chr16:67948974-67949285(+)$1	311	233	267	11.9090
===========[bbnnnnnbb]===========B	chr12:6619492-6619696(+)$1	204	77	111	11.9817
cc]ddddgggggggoooooogggggggggggggg	chr14:95999651-95999857(-)$1	206	123	157	15.6713
ii[ggggggg[cccccclllccc]ccc]gggggg	chr11:62432833-62433039(+)$1	206	70	104	13.4927
ggggggggggg[cccnnnnnccc22gggggggFF	chrX:135961287-135961513(-)$1	226	60	94	12.1534
ggg!!a[gggggggooooooggggggg]aggggg	chr16:2215627-2215945(+)$1	318	74	108	17.2005
fffff[dddd[cccoooooocccddddfffffff	chr3:39449854-39450061(+)$1	207	105	139	14.1027
e!!eeeee"""cccooooooccc]eeeeeeeeee	chr2:207026545-207026768(+)$1	223	82	116	14.9640
fffff!!gggggggnnnnnggggggg4444ffff	chr13:45911554-45911761(-)$1	207	31	65	11.9969
ggggggg!!gggggggmmmmgggggggggggggg	chr1:988334-988587(+)$1	253	44	78	12.0880
===========[bbnnnnnbb]===========B	chr12:6619508-6619712(+)$1	204	61	95	11.9817
!ffffff[ddddbboooooobb]dddd]ffffff	chr1:109642989-109643191(+)$1	202	92	126	13.3288
bggggggg"""cccooooooccc]ggggggg]bb	chr1:155895738-155895949(-)$1	211	151	185	16.6372
[ffffff[ffffffooooooffffff]ffffff]	chr3:129113542-129113833(-)$1	291	204	238	13.7228
gggggg[ccc[cccooooooccc]ccc]gggggg	chr7:6056446-6056651(+)$1	205	74	108	17.2891
bggggggg"""cccooooooccc]ggggggg]bb	chr1:155895749-155895969(-)$1	220	171	205	16.6372
''eeeeegggggggooooooggggggg]eeeee9	chr5:82359923-82360152(-)$1	229	77	111	14.6436
!eeeee[dddd[bboooooobb]ddddeeeee]b	chr3:183171560-183171767(+)$1	207	122	156	13.3493
!!ggggggg!!cccnnnnncccggggggg]bba]	chr1:235291111-235291343(-)$1	232	38	72	12.8999
c"""dddd[ffffffooooooffffff]ddddcc	chr9:139621121-139621331(-)$1	210	14	48	12.1482
::dddd[gggggggooooooggggggg]ddddcc	chr3:186505062-186505267(+)$1	205	107	141	13.8908
ff[dddd"""ddddoooooodddd22ddddffff	chr2:234184405-234184612(+)$1	207	117	151	12.4057
$iiiiiiiii!!cccmmmmccciiiiiiiii444	chr11:8705732-8705937(+)$1	205	121	155	11.9608
""ccc"""ffffffooooooffffff4444ccc2	chr1:28833912-28834119(+)$1	207	50	84	14.0832
''eeeeegggggggooooooggggggg]eeeee9	chr5:82359986-82360193(-)$1	207	118	152	14.6436
ffffff"""a[cccooooooccc]a333ffffff	chr18:47340606-47340815(+)$1	209	69	103	15.8604
%%ffffff"""cccooooooccc333ffffff22	chr16:2012329-2012534(-)$1	205	150	184	14.0710

#otherMatches

#Seq PSSM
UUAUGACAGGCCCAUCCCCCUGGACCUCUCAUAG	chr7:6056495-6056729(+)$1	234	25	59	17.2891
GCCCUGUCUGCCAUGGUGCUGUAGCAGCAGGGAU	chr3:183171575-183171780(+)$1	205	107	141	13.3493
UGUGUUAGCCUCAGACACUACUGAGGUGGUUCUU	chr1:93306257-93306459(+)$1	202	100	134	14.3577
GUGUACAUGAUGGUGUGUGUGCCAUGUGUACAUG	chr12:133112760-133113045(+)$1	285	187	221	15.0130
GCCCUGUCUGCCAUGGUGCUGUAGCAGCAGGGAU	chr3:183171629-183171836(+)$1	207	53	87	13.3493
UUGGCGGGGAUCGGGCUUGUGGUGCCGCUCCCCG	chr11:62432887-62433098(+)$1	211	16	50	13.4553
uugcaugugcgggugugugugccugugggugugc	chr17:79112641-79112893(-)$1	252	32	66	13.0516
GAGAGUGGAAUGACUCCUGUGGAGUUGAUCCUAG	chr5:138614503-138614714(+)$1	211	114	148	12.2302
GCAGGAUUUUCGCUAACACCAGUAGAGCUUGCCU	chr3:39449793-39450000(+)$1	207	166	200	14.1559
UUAUGACAGGCCCAUCCCCCUGGACCUCUCAUAG	chr7:6056407-6056613(+)$1	206	113	147	17.2891
UACCUGUCUGCUAUUCUCCUGUAGCAGCCAGGGA	chr3:186505018-186505226(+)$1	208	151	185	13.8908
GUAAGGCCAGAUCAAUAGCAUUGGUGGCCUUGCC	chr12:7076570-7076806(-)$1	236	161	195	11.0071
CAAAGCUGUCACCAUUUAAUUGGUAUCAGAUUCU	chr4:119200290-119200494(+)$1	204	131	165	11.9386
GAGAGUGGAAUGACUCCUGUGGAGUUGAUCCUAG	chr5:138614534-138614740(+)$1	206	83	117	12.2302
UUGGCGGGGAUCGGGCUUGUGGUGCCGCUCCCCG	chr11:62432882-62433087(+)$1	205	21	55	13.6901
ACAUCUACAUGUGUGUCAGAAUUAUUGUGCGUGU	chr16:81583404-81583681(+)$1	277	227	261	13.5253
GGGGGCCUGGCUGGGCCCUGCCAGCCACGGGGCU	chr3:48466992-48467273(-)$1	281	244	278	14.0454
AGGCGUGAGUGCGCGUGUGAGAGGACGAGAGCCC	chr13:26828267-26828520(+)$1	253	93	127	14.1916
ugaauguguguagugugugaauguguaugugugu	chr7:158055454-158055792(-)$1	338	284	318	14.3222
acguguggaugcaugaguggguggguggauaugu	chr11:70610683-70611044(-)$1	361	263	297	15.7988
UGGGCUUUGGGGGGUCCCUGUUCUCCUUAGCCAA	chr17:58308798-58309012(-)$1	214	18	52	13.3123
CAGUUCCAGGAUGUUGCGUCGCAUCUUUGUUGUG	chr2:240202261-240202573(-)$1	312	195	229	15.8338
CUUCCCACUUGUCCCCACCUGAGGCCGUGGUGUG	chr18:77670999-77671286(-)$1	287	223	257	13.6971
gcgucuguguguaucugugugugcauguguguau	chr19:7704922-7705187(+)$1	265	193	227	16.0419
CAAAUUGAGAGUGUCUUGGGGUCAGUUUUGAUUU	chr3:12881809-12882049(-)$1	240	18	52	11.0102
AAAUAUUUGAAUaugugugagugugggaaugugu	chr11:117680484-117680775(-)$1	291	28	62	13.4415
CAGAUGGAGUGUUUUCUGUUGAACACUAAGUACU	chr14:95999674-95999878(-)$1	204	144	178	14.8376
UUCCAAGGGCUGUGGCUGGUCAUAGCCAUGGGAU	chr1:28906867-28907071(-)$1	204	55	89	15.7632
augaguguggaugugugugaauguguguguguau	chr2:236420435-236420721(+)$1	286	50	84	12.8634
UUCCAGCUCCAGAGGCAAAUCCUGGCAGGUUCUG	chr16:67948974-67949285(+)$1	311	233	267	11.9090
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619492-6619696(+)$1	204	77	111	11.9817
CAGAUGGAGUGUUUUCUGUUGAACACUAAGUACU	chr14:95999651-95999857(-)$1	206	123	157	15.6713
UUGGCGGGGAUCGGGCUUGUGGUGCCGCUCCCCG	chr11:62432833-62433039(+)$1	206	70	104	13.4927
GGGCUAUUAUAAUUAAAAUAUAAGCUAUGAUGAA	chrX:135961287-135961513(-)$1	226	60	94	12.1534
ggccuggUCGCAUGAUUAAGCGUGUGAGUGCUGC	chr16:2215627-2215945(+)$1	318	74	108	17.2005
GCAGGAUUUUCGCUAACACCAGUAGAGCUUGCCU	chr3:39449854-39450061(+)$1	207	105	139	14.1027
UCACCAUCUUUCGGCUGAGUUCGUGAUGGAUUUG	chr2:207026545-207026768(+)$1	223	82	116	14.9640
AGACCUUGAACAAUUUACUGUUGUUCUUUUGGUU	chr13:45911554-45911761(-)$1	207	31	65	11.9969
guguucguguacacguguguaugugugugaacau	chr1:988334-988587(+)$1	253	44	78	12.0880
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619508-6619712(+)$1	204	61	95	11.9817
UGCAGCGAGGCCCCUUAGGCGGCGGCCACGCUGU	chr1:109642989-109643191(+)$1	202	92	126	13.3288
GCAGCCUUCACUGAAGAGUAUCACAGGGCUGACU	chr1:155895738-155895949(-)$1	211	151	185	16.6372
GGGGCUAGCUCUGUGUGUGUGCAGGGGUAGUCUG	chr3:129113542-129113833(-)$1	291	204	238	13.7228
UUAUGACAGGCCCAUCCCCCUGGACCUCUCAUAG	chr7:6056446-6056651(+)$1	205	74	108	17.2891
GCAGCCUUCACUGAAGAGUAUCACAGGGCUGACU	chr1:155895749-155895969(-)$1	220	171	205	16.6372
GGGCUGCCAACCUUCUAGUAAAGGUUGAGUGGUA	chr5:82359923-82360152(-)$1	229	77	111	14.6436
GCCCUGUCUGCCAUGGUGCUGUAGCAGCAGGGAU	chr3:183171560-183171767(+)$1	207	122	156	13.3493
uuggucaggcuagucucgaacuccugaccucaga	chr1:235291111-235291343(-)$1	232	38	72	12.8999
CGUUGCAGCUGUGGCUGCCGUGUCACAUCUGUGU	chr9:139621121-139621331(-)$1	210	14	48	12.1482
UACCUGUCUGCUAUUCUCCUGUAGCAGCCAGGGA	chr3:186505062-186505267(+)$1	205	107	141	13.8908
GUGUGUGUUUCUGAGAGUGAUCGGCUCACAGCUG	chr2:234184405-234184612(+)$1	207	117	151	12.4057
CACUGGCUGUGGGCCUUAUGGCACAGUCAGUCAC	chr11:8705732-8705937(+)$1	205	121	155	11.9608
caagucccuuuccacaacguuggaaauaaagcug	chr1:28833912-28834119(+)$1	207	50	84	14.0832
GGGCUGCCAACCUUCUAGUAAAGGUUGAGUGGUA	chr5:82359986-82360193(-)$1	207	118	152	14.6436
GAGGCUGGACGGGAGGGAGGUCUAGGGAGGCCUC	chr18:47340606-47340815(+)$1	209	69	103	15.8604
ACGACAGACCCGCCCAGAAUGGCCUCUCUGUUCC	chr16:2012329-2012534(-)$1	205	150	184	14.0710

#DB
((((((.(((.(((......))).))).))))))	chr7:6056495-6056729(+)$1	1	25	59	17.2891
.(((((.((((.((......)).))))))))).)	chr3:183171575-183171780(+)$1	1	107	141	13.3493
.(.....(((((((......)))))))....)))	chr1:93306257-93306459(+)$1	1	100	134	14.3577
((((((((.(((((......))))))))))))))	chr12:133112760-133113045(+)$1	1	187	221	15.0130
.(((((.((((.((......)).))))))))).)	chr3:183171629-183171836(+)$1	1	53	87	13.3493
(..(((((((.((((((...))).))).))))))	chr11:62432887-62433098(+)$1	1	16	50	13.4553
..((((.(((((((......))))))).)))).(	chr17:79112641-79112893(-)$1	1	32	66	13.0516
.(((.((((.(((((((...))))))).))).).	chr5:138614503-138614714(+)$1	1	114	148	12.2302
(((((.((((.(((......))))))))))))).	chr3:39449793-39450000(+)$1	1	166	200	14.1559
((((((.(((.(((......))).))).))))))	chr7:6056407-6056613(+)$1	1	113	147	17.2891
..((((.(((((((......))))))).))))((	chr3:186505018-186505226(+)$1	1	151	185	13.8908
(((((((((..(((((...)))))))))))))).	chr12:7076570-7076806(-)$1	1	161	195	11.0071
((((((((..((((......))))..)))...))	chr4:119200290-119200494(+)$1	1	131	165	11.9386
.(((.((((.(((((((...))))))).))).).	chr5:138614534-138614740(+)$1	1	83	117	12.2302
...(((((((.((((((...))).))).))))))	chr11:62432882-62433087(+)$1	1	21	55	13.6901
((((.((((...((......))...)))).))))	chr16:81583404-81583681(+)$1	1	227	261	13.5253
)(((((((((((((......))))))...)))))	chr3:48466992-48467273(-)$1	1	244	278	14.0454
.(((.(..((.(.(......).).))..).))))	chr13:26828267-26828520(+)$1	1	93	127	14.1916
...(((((....((......))...)))))...)	chr7:158055454-158055792(-)$1	1	284	318	14.3222
((((((..((.(((......))).))..))))))	chr11:70610683-70611044(-)$1	1	263	297	15.7988
..((((..((((((......))))))..))))..	chr17:58308798-58309012(-)$1	1	18	52	13.3123
((...(.(((((((......))))))).)...))	chr2:240202261-240202573(-)$1	1	195	229	15.8338
((.(((((..((((......).))).)))).).)	chr18:77670999-77671286(-)$1	1	223	257	13.6971
(((.(..(((((((......))))))).))))))	chr19:7704922-7705187(+)$1	1	193	227	16.0419
((((((((((.((.((...)).)).)))))))))	chr3:12881809-12882049(-)$1	1	18	52	11.0102
..((((((..((((......))))..))))))..	chr11:117680484-117680775(-)$1	1	28	62	13.4415
)).))))(((((((......)))))))(((((((	chr14:95999674-95999878(-)$1	1	144	178	14.8376
(((((..(((((((......))))))).))))).	chr1:28906867-28907071(-)$1	1	55	89	15.7632
(((....((.((((......)))).))..)))))	chr2:236420435-236420721(+)$1	1	50	84	12.8634
)).)))))))))(((.....)))(((((((((((	chr16:67948974-67949285(+)$1	1	233	267	11.9090
(((((((((((.((.....)).))))))))))))	chr12:6619492-6619696(+)$1	1	77	111	11.9817
)).))))(((((((......)))))))(((((((	chr14:95999651-95999857(-)$1	1	123	157	15.6713
((.(((((((.((((((...))).))).))))))	chr11:62432833-62433039(+)$1	1	70	104	13.4927
))))(((((((.(((.....)))..)))))))))	chrX:135961287-135961513(-)$1	1	60	94	12.1534
(((..(.(((((((......))))))).))))))	chr16:2215627-2215945(+)$1	1	74	108	17.2005
(((((.((((.(((......)))))))))))))(	chr3:39449854-39450061(+)$1	1	105	139	14.1027
(..(((((...(((......))).))))))))))	chr2:207026545-207026768(+)$1	1	82	116	14.9640
(((((..(((((((.....)))))))....))))	chr13:45911554-45911761(-)$1	1	31	65	11.9969
(((((((..(((((((....))))))))))))))	chr1:988334-988587(+)$1	1	44	78	12.0880
(((((((((((.((.....)).))))))))))))	chr12:6619508-6619712(+)$1	1	61	95	11.9817
.((((((.((((((......)).)))).))))))	chr1:109642989-109643191(+)$1	1	92	126	13.3288
((((((((...(((......))).))))))).))	chr1:155895738-155895949(-)$1	1	151	185	16.6372
.((((((.((((((......)))))).)))))).	chr3:129113542-129113833(-)$1	1	204	238	13.7228
((((((.(((.(((......))).))).))))))	chr7:6056446-6056651(+)$1	1	74	108	17.2891
((((((((...(((......))).))))))).))	chr1:155895749-155895969(-)$1	1	171	205	16.6372
..((((((((((((......))))))).))))).	chr5:82359923-82360152(-)$1	1	77	111	14.6436
.(((((.((((.((......)).))))))))).)	chr3:183171560-183171767(+)$1	1	122	156	13.3493
..(((((((..(((.....)))))))))).))).	chr1:235291111-235291343(-)$1	1	38	72	12.8999
(...((((.((((((......)))))).))))))	chr9:139621121-139621331(-)$1	1	14	48	12.1482
..((((.(((((((......))))))).))))((	chr3:186505062-186505267(+)$1	1	107	141	13.8908
((.((((...((((......))))..))))))))	chr2:234184405-234184612(+)$1	1	117	151	12.4057
.(((((((((..(((....))))))))))))...	chr11:8705732-8705937(+)$1	1	121	155	11.9608
..(((...((((((......))))))....))).	chr1:28833912-28834119(+)$1	1	50	84	14.0832
..((((((((((((......))))))).))))).	chr5:82359986-82360193(-)$1	1	118	152	14.6436
((((((...(.(((......))).)...))))))	chr18:47340606-47340815(+)$1	1	69	103	15.8604
..((((((...(((......)))...))))))..	chr16:2012329-2012534(-)$1	1	150	184	14.0710

#PSSM
g : 0.14	f : 0.12	" : 0.10	! : 0.08	= : 0.07	e : 0.07	[ : 0.05	: : 0.05	b : 0.05	c : 0.05	i : 0.03	d : 0.03	' : 0.03	C : 0.01	# : 0.01	$ : 0.01	% : 0.01	
g : 0.19	f : 0.14	e : 0.10	c : 0.08	" : 0.08	= : 0.07	! : 0.05	: : 0.05	i : 0.05	d : 0.03	' : 0.03	a : 0.01	# : 0.01	b : 0.01	% : 0.01	
g : 0.21	f : 0.16	e : 0.12	d : 0.08	= : 0.07	c : 0.07	" : 0.07	[ : 0.05	] : 0.05	! : 0.03	i : 0.03	$ : 0.01	
g : 0.23	f : 0.16	e : 0.14	d : 0.12	= : 0.07	c : 0.07	i : 0.05	" : 0.03	$ : 0.01	b : 0.01	a : 0.01	[ : 0.01	# : 0.01	! : 0.01	
g : 0.23	d : 0.16	e : 0.14	f : 0.14	= : 0.07	[ : 0.07	i : 0.05	$ : 0.01	b : 0.01	" : 0.01	a : 0.01	# : 0.01	! : 0.01	c : 0.01	
g : 0.23	d : 0.17	e : 0.12	a : 0.08	f : 0.08	= : 0.07	i : 0.05	! : 0.05	[ : 0.03	$ : 0.01	c : 0.01	# : 0.01	" : 0.01	
[ : 0.19	g : 0.16	d : 0.14	! : 0.10	= : 0.07	e : 0.07	f : 0.07	c : 0.05	i : 0.05	" : 0.03	$ : 0.01	# : 0.01	
g : 0.37	d : 0.14	c : 0.10	= : 0.07	! : 0.07	i : 0.05	" : 0.05	e : 0.03	f : 0.03	[ : 0.03	b : 0.01	
g : 0.32	d : 0.12	" : 0.10	c : 0.08	! : 0.07	f : 0.07	i : 0.05	b : 0.05	= : 0.05	[ : 0.03	# : 0.01	
g : 0.32	d : 0.10	" : 0.10	! : 0.08	f : 0.08	c : 0.05	[ : 0.05	= : 0.05	b : 0.03	i : 0.03	e : 0.01	# : 0.01	a : 0.01	
g : 0.30	[ : 0.21	d : 0.14	" : 0.08	f : 0.08	! : 0.05	= : 0.03	e : 0.01	# : 0.01	c : 0.01	i : 0.01	
c : 0.28	g : 0.28	[ : 0.10	d : 0.08	f : 0.08	e : 0.03	" : 0.01	a : 0.01	# : 0.01	b : 0.01	i : 0.01	! : 0.01	
c : 0.33	g : 0.28	b : 0.16	f : 0.08	d : 0.07	e : 0.03	[ : 0.01	
c : 0.32	g : 0.28	b : 0.14	f : 0.08	d : 0.07	e : 0.03	a : 0.03	[ : 0.01	
o : 0.71	c : 0.10	n : 0.07	g : 0.05	e : 0.01	b : 0.01	f : 0.01	
o : 0.73	n : 0.10	c : 0.05	g : 0.05	e : 0.01	b : 0.01	m : 0.01	
o : 0.73	n : 0.10	c : 0.05	g : 0.03	l : 0.03	m : 0.03	
o : 0.73	l : 0.12	n : 0.10	m : 0.03	
o : 0.73	l : 0.12	n : 0.10	m : 0.03	
o : 0.73	l : 0.08	b : 0.05	n : 0.03	c : 0.03	e : 0.01	g : 0.01	m : 0.01	
c : 0.32	g : 0.28	b : 0.16	d : 0.07	f : 0.07	e : 0.03	a : 0.03	o : 0.01	
c : 0.32	g : 0.28	b : 0.10	f : 0.08	] : 0.08	d : 0.07	e : 0.03	
c : 0.30	g : 0.30	f : 0.08	] : 0.07	d : 0.07	e : 0.03	3 : 0.03	= : 0.03	a : 0.01	b : 0.01	i : 0.01	
g : 0.30	] : 0.21	d : 0.17	f : 0.08	3 : 0.05	e : 0.03	i : 0.03	= : 0.03	c : 0.01	b : 0.01	2 : 0.01	
g : 0.33	c : 0.12	d : 0.10	f : 0.08	2 : 0.07	i : 0.05	3 : 0.05	e : 0.03	b : 0.03	] : 0.03	= : 0.03	a : 0.01	
g : 0.35	d : 0.12	c : 0.10	f : 0.08	= : 0.07	i : 0.05	2 : 0.05	b : 0.05	e : 0.03	3 : 0.03	] : 0.01	
g : 0.33	d : 0.16	c : 0.12	= : 0.07	i : 0.05	2 : 0.05	f : 0.05	3 : 0.03	e : 0.03	4 : 0.03	b : 0.01	] : 0.01	
] : 0.33	e : 0.10	g : 0.10	f : 0.08	= : 0.07	2 : 0.07	4 : 0.05	i : 0.05	d : 0.05	3 : 0.03	c : 0.01	
g : 0.23	e : 0.16	d : 0.14	f : 0.12	= : 0.07	a : 0.07	4 : 0.05	c : 0.05	i : 0.05	3 : 0.01	2 : 0.01	
g : 0.26	e : 0.17	d : 0.12	f : 0.12	= : 0.07	4 : 0.05	i : 0.05	] : 0.05	c : 0.03	3 : 0.03	
g : 0.26	f : 0.17	e : 0.16	d : 0.08	= : 0.07	c : 0.07	i : 0.05	3 : 0.05	4 : 0.01	] : 0.01	b : 0.01	
g : 0.23	f : 0.17	e : 0.16	d : 0.08	= : 0.07	] : 0.07	3 : 0.05	a : 0.03	i : 0.03	c : 0.03	b : 0.01	4 : 0.01	
g : 0.21	f : 0.14	c : 0.08	b : 0.08	e : 0.08	] : 0.07	= : 0.07	a : 0.05	3 : 0.03	2 : 0.03	h : 0.01	: : 0.01	i : 0.01	d : 0.01	F : 0.01	4 : 0.01	
g : 0.21	b : 0.16	f : 0.10	] : 0.07	c : 0.07	2 : 0.07	= : 0.05	e : 0.05	9 : 0.05	4 : 0.03	B : 0.03	h : 0.01	3 : 0.01	d : 0.01	F : 0.01	

#score	780.0979212885051
#seq	56
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_transcript_m3_run2.txt

#BEAR
eeeeettttttttttteeeee:	chr15:85591690-85591972(+)$1	282	18	40	20.6175
eebbvvvvvvvvvvvvvbb]ee	chr16:30914300-30914599(+)$1	299	145	167	22.3484
ddddwwwwwwwwwwwwwwdddd	chr1:93633626-93633877(-)$1	251	71	93	20.9789
cccwwwwwwwwwwwwwwccc33	chr19:29001264-29001567(-)$1	303	196	218	22.3479
eeewwwwwwwwwwwwwweeeee	chr2:111983420-111983697(-)$1	277	96	118	22.0306
[ddddtttttttttttdddd]b	chr9:114128795-114129031(-)$1	236	105	127	20.7654
fffwwwwwwwwwwwwwwfffff	chr2:9050149-9050417(-)$1	268	230	252	21.2446
gg[auuuuuuuuuuuua]gggg	chr18:217669-217991(-)$1	322	135	157	23.4162
##bbtttttttttttbb333ee	chr3:48571454-48571743(-)$1	289	85	107	20.7077
bcccuuuuuuuuuuuuccc555	chr18:47017552-47017757(-)$1	205	102	124	20.4546
bbyyyyyyyyyyyyyyyybb]e	chr6:29596209-29596475(-)$1	266	28	50	19.3670
eeeevvvvvvvvvvvvveeeee	chr8:91303770-91304022(+)$1	252	49	71	23.0196
hh[bbtttttttttttbbhhhh	chr2:191080285-191080544(-)$1	259	49	71	20.1663
fffwwwwwwwwwwwwwwfffff	chr7:149267036-149267285(-)$1	249	218	240	21.2446
cccwwwwwwwwwwwwwwccc::	chr7:130719911-130720195(-)$1	284	200	222	20.3995
[ccctttttttttttcccbb33	chr11:107727455-107727700(-)$1	245	9	31	21.4493
ccbbtttttttttttbb]ccc:	chr2:15428376-15428647(-)$1	271	207	229	20.3734
d!!auuuuuuuuuuuua22ddd	chr5:130889456-130889717(-)$1	261	74	96	22.5185
cccwwwwwwwwwwwwwwccc]d	chr8:37966962-37967234(+)$1	272	110	132	22.1980
g[bbvvvvvvvvvvvvvbbggg	chr11:18343083-18343334(-)$1	251	58	80	22.4653
eeeeettttttttttteeeeeb	chr16:18055411-18055746(-)$1	335	164	186	21.1972
gggguuuuuuuuuuuugggggg	chr2:61153174-61153434(+)$1	260	201	223	22.8644
eeeettttttttttteeeee33	chr3:112523255-112523513(+)$1	258	204	226	21.4446
ecccvvvvvvvvvvvvvccc]e	chr5:130933814-130934120(-)$1	306	28	50	23.3930
ccyyyyyyyyyyyyyyyyccc2	chr18:2984390-2984727(-)$1	337	209	231	20.4531
ccyyyyyyyyyyyyyyyycccd	chr1:29214312-29214627(+)$1	315	177	199	20.4970
cccwwwwwwwwwwwwwwccc::	chr21:47668627-47668884(-)$1	257	158	180	20.3995
dddwwwwwwwwwwwwwwdddd]	chr10:75794077-75794345(+)$1	268	119	141	21.6189
gggggtttttttttttgggggg	chr8:130495162-130495413(-)$1	251	210	232	21.3488
eeewwwwwwwwwwwwwweeeee	chrX:11394005-11394256(-)$1	251	208	230	22.0306
[cccuuuuuuuuuuuuccc22c	chrX:47083158-47083446(+)$1	288	9	31	22.8748
hhyyyyyyyyyyyyyyyyhhhh	chr15:64921153-64921436(+)$1	283	58	80	19.6134
[cccuuuuuuuuuuuucccddd	chr6:30703886-30704173(-)$1	287	181	203	23.0455
[cccuuuuuuuuuuuuccc]dd	chr1:247085013-247085324(-)$1	311	31	53	23.0446
gggwwwwwwwwwwwwwwggggg	chr9:99672379-99672662(-)$1	283	207	229	22.1025
ddddvvvvvvvvvvvvvdddd4	chr8:68240144-68240416(-)$1	272	150	172	22.4701
eeeettttttttttteeeeecc	chr2:32444000-32444265(+)$1	265	9	31	21.2573
cccyyyyyyyyyyyyyyyyccc	chr1:167976201-167976450(+)$1	249	65	87	20.4068
!cccuuuuuuuuuuuuccc22a	chr10:17400428-17400743(-)$1	315	265	287	22.8421
=====ttttttttttt======	chr20:31394500-31394737(+)$1	237	210	232	21.6396
hhhhuuuuuuuuuuuuhhhhhh	chr1:110564279-110564525(+)$1	246	168	190	20.9950
ggggvvvvvvvvvvvvvggggg	chr11:32919490-32919742(+)$1	252	126	148	23.1009
eeewwwwwwwwwwwwwweeeee	chr16:20694062-20694386(+)$1	324	152	174	22.0306
cccwwwwwwwwwwwwwwccc]d	chr6:43151696-43151935(+)$1	239	214	236	22.1980
eeeettttttttttteeeee33	chr4:79812322-79812580(+)$1	258	167	189	21.4446
d[bbtttttttttttbb]dddd	chr13:42465111-42465377(-)$1	266	25	47	20.7777
##bbvvvvvvvvvvvvvbb444	chr2:118584238-118584481(+)$1	243	118	140	22.0335
gggggtttttttttttgggggg	chr11:31523021-31523267(-)$1	246	168	190	21.3488
ddddwwwwwwwwwwwwwwdddd	chrX:117646853-117647117(+)$1	264	208	230	20.9789
""bbtttttttttttbb333cc	chr2:85236657-85236948(+)$1	291	87	109	20.7820
ffffvvvvvvvvvvvvvfffff	chr4:140063401-140063695(-)$1	294	13	35	22.1753
eeeeettttttttttteeeeeb	chr14:55655995-55656267(-)$1	272	139	161	21.1972
c[bbtttttttttttbb]ccc]	chr7:99949019-99949279(+)$1	260	74	96	21.2638
dddwwwwwwwwwwwwwwdddd]	chr8:141993629-141993907(-)$1	278	242	264	21.6189
eeeeuuuuuuuuuuuueeeee]	chr11:9170280-9170573(-)$1	293	61	83	22.9292
eeewwwwwwwwwwwwwweeeee	chrX:106360447-106360705(-)$1	258	189	211	22.0306
gggguuuuuuuuuuuugggggg	chr15:49525532-49525909(+)$1	377	285	307	22.8644
====vvvvvvvvvvvvv=====	chr2:234197392-234197613(+)$1	221	194	216	23.2038
eeeeettttttttttteeeeee	chr11:14580715-14580996(-)$1	281	48	70	21.4009
eeeeuuuuuuuuuuuueeeee]	chr1:42651724-42651953(-)$1	229	14	36	22.9292
gggguuuuuuuuuuuugggggg	chr4:187417162-187417423(-)$1	261	166	188	22.8644
eeeeettttttttttteeeee:	chr15:58328870-58329117(-)$1	247	103	125	20.6175
ffffftttttttttttffffff	chr12:28514315-28514558(+)$1	243	152	174	20.4588
cccwwwwwwwwwwwwwwccc]c	chr9:116651919-116652231(+)$1	312	177	199	22.2871
dddvvvvvvvvvvvvvdddd]c	chr7:148534627-148534908(-)$1	281	207	229	22.1805
ddddvvvvvvvvvvvvvdddd]	chr1:229401706-229401985(-)$1	279	193	215	22.5534
ffffvvvvvvvvvvvvvfffff	chr1:241677710-241677985(-)$1	275	185	207	22.1753

#otherMatches

#Seq PSSM
AGCAUCCCUCCAGUUUAUGCUU	chr15:85591690-85591972(+)$1	282	18	40	20.6175
GGUGUCUCUGUUUUUUCCAUCC	chr16:30914300-30914599(+)$1	299	145	167	22.3484
uguacuuguucuucuuuuuaca	chr1:93633626-93633877(-)$1	251	71	93	20.9789
UGGUAUCUUGUUUAUCUCCAAG	chr19:29001264-29001567(-)$1	303	196	218	22.3479
AGCUCCACCUCCUUUCUGCUCA	chr2:111983420-111983697(-)$1	277	96	118	22.0306
CCUUGUCUUUUUUUCCCAGGUU	chr9:114128795-114129031(-)$1	236	105	127	20.7654
gguuaauuaugguucacaccug	chr2:9050149-9050417(-)$1	268	230	252	21.2446
ugucuuucccuuuccugucagg	chr18:217669-217991(-)$1	322	135	157	23.4162
cugguuuuuuaauuucuucugu	chr3:48571454-48571743(-)$1	289	85	107	20.7077
AGCCACCUUAUAUUUAGGCAUU	chr18:47017552-47017757(-)$1	205	102	124	20.4546
CCCACCCAUCCCAACCCUGGCC	chr6:29596209-29596475(-)$1	266	28	50	19.3670
uguguuccacuauuccuuacag	chr8:91303770-91304022(+)$1	252	49	71	23.0196
agcagcuuaacucuuucucuGG	chr2:191080285-191080544(-)$1	259	49	71	20.1663
ggucuuuccaugccucugccag	chr7:149267036-149267285(-)$1	249	218	240	21.2446
ggcucaccacaaccucugccuc	chr7:130719911-130720195(-)$1	284	200	222	20.3995
ucacuuaacuucucugugcucc	chr11:107727455-107727700(-)$1	245	9	31	21.4493
ccgcuauauuuaauugcugguu	chr2:15428376-15428647(-)$1	271	207	229	20.3734
CUUGUUCUAUCAUCUUCUUGAC	chr5:130889456-130889717(-)$1	261	74	96	22.5185
UGUUUCUCUUCUCAAAUGCGUU	chr8:37966962-37967234(+)$1	272	110	132	22.1980
GCAGUCUGCAACUUCCCCUUCU	chr11:18343083-18343334(-)$1	251	58	80	22.4653
CCAGCUCCUUUAGCCUGCUGGG	chr16:18055411-18055746(-)$1	335	164	186	21.1972
AAAGACCAAAUAAAACCUUUCC	chr2:61153174-61153434(+)$1	260	201	223	22.8644
UCCACcacuuaauauuggaguu	chr3:112523255-112523513(+)$1	258	204	226	21.4446
aguauuuuaaaaauuauugcuu	chr5:130933814-130934120(-)$1	306	28	50	23.3930
GGCUUCUUCCAUUUUUCUCCAC	chr18:2984390-2984727(-)$1	337	209	231	20.4531
CCCUCACCUACACUUCCCGGCA	chr1:29214312-29214627(+)$1	315	177	199	20.4970
gacuuuauuuuccaauuguccu	chr21:47668627-47668884(-)$1	257	158	180	20.3995
ucuuauucugccuuccuagagu	chr10:75794077-75794345(+)$1	268	119	141	21.6189
AAAGCUAUUUUAAACUGuuuua	chr8:130495162-130495413(-)$1	251	210	232	21.3488
AUAUUUUGAACUUCCUUUAUCU	chrX:11394005-11394256(-)$1	251	208	230	22.0306
CUGGCUAUCCCCUCUCCCAUAU	chrX:47083158-47083446(+)$1	288	9	31	22.8748
CUUCUCUCAGUCCUUCCUAGAC	chr15:64921153-64921436(+)$1	283	58	80	19.6134
cagcgguacaaucucagcucac	chr6:30703886-30704173(-)$1	287	181	203	23.0455
AUGGUuuauuuaaacuccacac	chr1:247085013-247085324(-)$1	311	31	53	23.0446
GCGUCUCUUCCAUUUUCCGCCU	chr9:99672379-99672662(-)$1	283	207	229	22.1025
UCUAUUUCAAAUUcuucuagaa	chr8:68240144-68240416(-)$1	272	150	172	22.4701
UGAUUAUUUAUUUCUGUUAGGU	chr2:32444000-32444265(+)$1	265	9	31	21.2573
gacuauuuuacacuuucauguc	chr1:167976201-167976450(+)$1	249	65	87	20.4068
UACUCAUUAUUUUCAAAGUUUA	chr10:17400428-17400743(-)$1	315	265	287	22.8421
guauucugaaggcuuugauaua	chr20:31394500-31394737(+)$1	237	210	232	21.6396
UUCUGCAGACCACACAGGAACU	chr1:110564279-110564525(+)$1	246	168	190	20.9950
uucuucuuauaccauccagagu	chr11:32919490-32919742(+)$1	252	126	148	23.1009
AUGUCCCCUCUUUCCUUCAUUC	chr16:20694062-20694386(+)$1	324	152	174	22.0306
UGGCCUCCUAAAUUCUACCAUG	chr6:43151696-43151935(+)$1	239	214	236	22.1980
uauuaacuuguucugaauauuc	chr4:79812322-79812580(+)$1	258	167	189	21.4446
gucuuuuuuuuuuuuggucagu	chr13:42465111-42465377(-)$1	266	25	47	20.7777
CUGUCUCCUAUUCAUCAACUCU	chr2:118584238-118584481(+)$1	243	118	140	22.0335
uguauaaugaacagaaauauau	chr11:31523021-31523267(-)$1	246	168	190	21.3488
UCCCUUCUACCAUGCCCUGGGA	chrX:117646853-117647117(+)$1	264	208	230	20.9789
uuucuuccauguucugauuucu	chr2:85236657-85236948(+)$1	291	87	109	20.7820
gauccuuauaauaaucagauca	chr4:140063401-140063695(-)$1	294	13	35	22.1753
UGGCUUUCUCUUCACUGGUCAA	chr14:55655995-55656267(-)$1	272	139	161	21.1972
aggcauuggcucugggugucau	chr7:99949019-99949279(+)$1	260	74	96	21.2638
AGUUUACCAGUUAUAAUGCUUU	chr8:141993629-141993907(-)$1	278	242	264	21.6189
uuggcuuucaccaucuucaauu	chr11:9170280-9170573(-)$1	293	61	83	22.9292
UAAAUUACUACUUCUUAUUAUC	chrX:106360447-106360705(-)$1	258	189	211	22.0306
AUAUGCUAACAUAACUGUAUCU	chr15:49525532-49525909(+)$1	377	285	307	22.8644
UCUGAUUGAAAAUCCCCCAGGG	chr2:234197392-234197613(+)$1	221	194	216	23.2038
AGGAAGGGAACUAAAAUUCCUC	chr11:14580715-14580996(-)$1	281	48	70	21.4009
UCUGUUCACAAAUAUUCAGAUU	chr1:42651724-42651953(-)$1	229	14	36	22.9292
ucuguuuaauuucuucuagagc	chr4:187417162-187417423(-)$1	261	166	188	22.8644
AAGCAAACUCCUUCACUGCUUA	chr15:58328870-58329117(-)$1	247	103	125	20.6175
uauuuuccaucauauuaaauau	chr12:28514315-28514558(+)$1	243	152	174	20.4588
CAAUCACCUAACACAUUUUGAG	chr9:116651919-116652231(+)$1	312	177	199	22.2871
UGCUAUUUAUCUCAUUGCAGUU	chr7:148534627-148534908(-)$1	281	207	229	22.1805
caggcauugccauuucaccugc	chr1:229401706-229401985(-)$1	279	193	215	22.5534
CAAGAACUCACAAUUCACUUGU	chr1:241677710-241677985(-)$1	275	185	207	22.1753

#DB
(((((...........))))).	chr15:85591690-85591972(+)$1	1	18	40	20.6175
((((.............)).))	chr16:30914300-30914599(+)$1	1	145	167	22.3484
((((..............))))	chr1:93633626-93633877(-)$1	1	71	93	20.9789
(((..............)))..	chr19:29001264-29001567(-)$1	1	196	218	22.3479
(((..............)))))	chr2:111983420-111983697(-)$1	1	96	118	22.0306
.((((...........)))).)	chr9:114128795-114129031(-)$1	1	105	127	20.7654
(((..............)))))	chr2:9050149-9050417(-)$1	1	230	252	21.2446
((.(............).))))	chr18:217669-217991(-)$1	1	135	157	23.4162
..((...........))...))	chr3:48571454-48571743(-)$1	1	85	107	20.7077
((((............)))...	chr18:47017552-47017757(-)$1	1	102	124	20.4546
((................)).)	chr6:29596209-29596475(-)$1	1	28	50	19.3670
((((.............)))))	chr8:91303770-91304022(+)$1	1	49	71	23.0196
((.((...........))))))	chr2:191080285-191080544(-)$1	1	49	71	20.1663
(((..............)))))	chr7:149267036-149267285(-)$1	1	218	240	21.2446
(((..............)))..	chr7:130719911-130720195(-)$1	1	200	222	20.3995
.(((...........)))))..	chr11:107727455-107727700(-)$1	1	9	31	21.4493
((((...........)).))).	chr2:15428376-15428647(-)$1	1	207	229	20.3734
(..(............)..)))	chr5:130889456-130889717(-)$1	1	74	96	22.5185
(((..............))).)	chr8:37966962-37967234(+)$1	1	110	132	22.1980
(.((.............)))))	chr11:18343083-18343334(-)$1	1	58	80	22.4653
(((((...........)))))(	chr16:18055411-18055746(-)$1	1	164	186	21.1972
((((............))))))	chr2:61153174-61153434(+)$1	1	201	223	22.8644
((((...........)))))..	chr3:112523255-112523513(+)$1	1	204	226	21.4446
((((.............))).)	chr5:130933814-130934120(-)$1	1	28	50	23.3930
((................))).	chr18:2984390-2984727(-)$1	1	209	231	20.4531
((................))))	chr1:29214312-29214627(+)$1	1	177	199	20.4970
(((..............)))..	chr21:47668627-47668884(-)$1	1	158	180	20.3995
(((..............)))).	chr10:75794077-75794345(+)$1	1	119	141	21.6189
(((((...........))))))	chr8:130495162-130495413(-)$1	1	210	232	21.3488
(((..............)))))	chrX:11394005-11394256(-)$1	1	208	230	22.0306
.(((............)))..)	chrX:47083158-47083446(+)$1	1	9	31	22.8748
((................))))	chr15:64921153-64921436(+)$1	1	58	80	19.6134
.(((............))))))	chr6:30703886-30704173(-)$1	1	181	203	23.0455
.(((............))).))	chr1:247085013-247085324(-)$1	1	31	53	23.0446
(((..............)))))	chr9:99672379-99672662(-)$1	1	207	229	22.1025
((((.............)))).	chr8:68240144-68240416(-)$1	1	150	172	22.4701
((((...........)))))))	chr2:32444000-32444265(+)$1	1	9	31	21.2573
(((................)))	chr1:167976201-167976450(+)$1	1	65	87	20.4068
.(((............)))..)	chr10:17400428-17400743(-)$1	1	265	287	22.8421
(((((...........))))))	chr20:31394500-31394737(+)$1	1	210	232	21.6396
((((............))))))	chr1:110564279-110564525(+)$1	1	168	190	20.9950
((((.............)))))	chr11:32919490-32919742(+)$1	1	126	148	23.1009
(((..............)))))	chr16:20694062-20694386(+)$1	1	152	174	22.0306
(((..............))).)	chr6:43151696-43151935(+)$1	1	214	236	22.1980
((((...........)))))..	chr4:79812322-79812580(+)$1	1	167	189	21.4446
(.((...........)).))))	chr13:42465111-42465377(-)$1	1	25	47	20.7777
..((.............))...	chr2:118584238-118584481(+)$1	1	118	140	22.0335
(((((...........))))))	chr11:31523021-31523267(-)$1	1	168	190	21.3488
((((..............))))	chrX:117646853-117647117(+)$1	1	208	230	20.9789
..((...........))...))	chr2:85236657-85236948(+)$1	1	87	109	20.7820
((((.............)))))	chr4:140063401-140063695(-)$1	1	13	35	22.1753
(((((...........)))))(	chr14:55655995-55656267(-)$1	1	139	161	21.1972
(.((...........)).))).	chr7:99949019-99949279(+)$1	1	74	96	21.2638
(((..............)))).	chr8:141993629-141993907(-)$1	1	242	264	21.6189
((((............))))).	chr11:9170280-9170573(-)$1	1	61	83	22.9292
(((..............)))))	chrX:106360447-106360705(-)$1	1	189	211	22.0306
((((............))))))	chr15:49525532-49525909(+)$1	1	285	307	22.8644
((((.............)))))	chr2:234197392-234197613(+)$1	1	194	216	23.2038
(((((...........))))))	chr11:14580715-14580996(-)$1	1	48	70	21.4009
((((............))))).	chr1:42651724-42651953(-)$1	1	14	36	22.9292
((((............))))))	chr4:187417162-187417423(-)$1	1	166	188	22.8644
(((((...........))))).	chr15:58328870-58329117(-)$1	1	103	125	20.6175
(((((...........))))))	chr12:28514315-28514558(+)$1	1	152	174	20.4588
(((..............))).)	chr9:116651919-116652231(+)$1	1	177	199	22.2871
(((.............)))).)	chr7:148534627-148534908(-)$1	1	207	229	22.1805
((((.............)))).	chr1:229401706-229401985(-)$1	1	193	215	22.5534
((((.............)))))	chr1:241677710-241677985(-)$1	1	185	207	22.1753

#PSSM
e : 0.25	c : 0.16	d : 0.13	g : 0.13	[ : 0.07	f : 0.07	h : 0.04	# : 0.02	b : 0.02	= : 0.02	! : 0.01	" : 0.01	
c : 0.25	e : 0.23	d : 0.11	g : 0.11	f : 0.07	h : 0.04	[ : 0.04	# : 0.02	= : 0.02	b : 0.01	! : 0.01	" : 0.01	
e : 0.22	c : 0.20	b : 0.11	d : 0.11	g : 0.10	f : 0.07	y : 0.05	[ : 0.02	= : 0.02	! : 0.01	h : 0.01	
w : 0.22	e : 0.16	b : 0.13	c : 0.10	g : 0.08	d : 0.07	y : 0.07	f : 0.04	a : 0.02	= : 0.02	h : 0.01	v : 0.01	
w : 0.25	u : 0.19	v : 0.17	t : 0.13	e : 0.07	y : 0.07	g : 0.02	d : 0.01	b : 0.01	= : 0.01	f : 0.01	
t : 0.29	w : 0.25	u : 0.19	v : 0.17	y : 0.07	
t : 0.29	w : 0.25	u : 0.19	v : 0.17	y : 0.07	
t : 0.29	w : 0.25	u : 0.19	v : 0.17	y : 0.07	
t : 0.29	w : 0.25	u : 0.19	v : 0.17	y : 0.07	
t : 0.29	w : 0.25	u : 0.19	v : 0.17	y : 0.07	
t : 0.29	w : 0.25	u : 0.19	v : 0.17	y : 0.07	
t : 0.29	w : 0.25	u : 0.19	v : 0.17	y : 0.07	
t : 0.29	w : 0.25	u : 0.19	v : 0.17	y : 0.07	
t : 0.29	w : 0.25	u : 0.19	v : 0.17	y : 0.07	
t : 0.29	w : 0.25	u : 0.19	v : 0.17	y : 0.07	
w : 0.25	u : 0.19	v : 0.17	t : 0.16	b : 0.07	y : 0.07	e : 0.04	c : 0.01	
w : 0.25	v : 0.16	e : 0.14	b : 0.08	c : 0.08	y : 0.07	g : 0.07	d : 0.02	a : 0.02	= : 0.01	h : 0.01	f : 0.01	
e : 0.22	c : 0.19	g : 0.10	d : 0.08	f : 0.07	y : 0.07	b : 0.05	] : 0.05	w : 0.02	3 : 0.02	= : 0.02	2 : 0.01	h : 0.01	
c : 0.23	e : 0.22	d : 0.13	g : 0.11	b : 0.07	f : 0.07	h : 0.04	3 : 0.02	= : 0.02	2 : 0.01	y : 0.01	
e : 0.22	c : 0.17	d : 0.16	g : 0.13	f : 0.07	h : 0.04	] : 0.02	3 : 0.02	b : 0.02	2 : 0.02	= : 0.02	5 : 0.01	4 : 0.01	
e : 0.20	d : 0.14	g : 0.13	] : 0.10	c : 0.10	f : 0.07	3 : 0.05	h : 0.04	: : 0.02	2 : 0.02	= : 0.02	5 : 0.01	4 : 0.01	
e : 0.14	d : 0.13	g : 0.13	] : 0.08	c : 0.08	: : 0.07	f : 0.07	3 : 0.05	b : 0.04	h : 0.04	4 : 0.02	= : 0.02	5 : 0.01	2 : 0.01	a : 0.01	

#score	1453.1006625009777
#seq	67
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_CDS_m3_run1.txt

#BEAR
c!!ffffffooooooffffff22	chr2:152293233-152293494(+)$1	261	205	228	11.6562
eccceeeeeooooooeeeee333	chr6:27094106-27094320(-)$1	214	83	106	12.8076
ggggggg[aooooooa]gggggg	chr14:102551620-102551840(-)$1	220	30	53	13.5396
""eeeeebboooooobb]eeeee	chr5:179047862-179048115(-)$1	253	79	102	11.7497
cc[ffffffooooooffffffcc	chr2:70451603-70451872(-)$1	269	69	92	11.3867
ee"""ddddoooooodddd]eee	chr1:172520521-172520778(+)$1	257	51	74	11.4938
HHgggggggooooooggggggg:	chr3:186505480-186505727(+)$1	247	11	34	11.3137
==========nnnnn========	chr4:1952689-1952943(+)$1	254	46	69	9.2751
:dddd!!bboooooobb333ddd	chr6:91245981-91246228(-)$1	247	134	157	9.9729
[iiiiiiiiillliiiiiiiiia	chr10:111881756-111882004(+)$1	248	1	24	8.7683
ffbb[ddddoooooodddd]bb]	chr12:123078727-123078976(+)$1	249	33	56	10.5080
""gggggggooooooggggggg]	chr22:20080228-20080479(+)$1	251	20	43	13.6544
iiiiiia[aooooooa]a]iiii	chr10:51049974-51050221(-)$1	247	127	150	13.2850
eccceeeeeooooooeeeee333	chr6:27094120-27094350(-)$1	230	113	136	12.8076
d!!ccc[bboooooobb]ccc22	chrX:19372502-19372750(+)$1	248	69	92	12.1389
C:gggggggooooooggggggg:	chr11:87006715-87006966(+)$1	251	3	26	10.5005
!ccc[ddddoooooodddd22cc	chr2:191523768-191524051(+)$1	283	35	58	11.5298
e"""eeeeeooooooeeeee22e	chr3:47147473-47147767(-)$1	294	252	275	12.5482
fffff!!bboooooobb22ffff	chr16:23502976-23503230(-)$1	254	214	237	10.9196
iiiiiiiiiooooooiiiiiiii	chr8:103282247-103282518(-)$1	271	141	164	13.4048
ceeeee[bboooooobb]eeeee	chr3:9516640-9516895(+)$1	255	201	224	11.5466
eeeee!!bboooooobbeeeeeF	chr1:12408776-12409051(+)$1	275	229	252	11.2407
[bb[eeeeeooooooeeeee]bb	chr5:133712249-133712496(+)$1	247	67	90	11.6339
hhhhhh[bboooooobbhhhhhh	chr12:116443680-116443912(-)$1	232	133	156	10.4655
iiiiiiiiinnnnniiiiiiiii	chr1:27105396-27105653(+)$1	257	32	55	8.7463
cc"""bb[aooooooabb]cccf	chr17:29551999-29552289(+)$1	290	47	70	11.8320
::gggggggooooooggggggga	chr7:158450950-158451210(-)$1	260	20	43	11.4705
ddd"""cccooooooccc]dddd	chr21:34131439-34131695(-)$1	256	177	200	11.2538
bbgggggggooooooggggggg]	chrX:13337635-13337861(+)$1	226	127	150	13.0581
####eeeeeooooooeeeee333	chr4:184633641-184633897(+)$1	256	57	80	13.2652
!!eeeee[aooooooa]eeeee]	chr11:45991308-45991568(-)$1	260	33	56	12.7176
gg!!eeeeeooooooeeeee]gg	chr7:150066644-150066908(+)$1	264	74	97	12.9649
g"""eeeeeooooooeeeee333	chr19:8528232-8528503(+)$1	271	30	53	13.4304
ggggggg[aooooooaggggggg	chr14:35786328-35786614(+)$1	286	177	200	13.5942
==========lll==========	chr3:160131145-160131399(+)$1	254	41	64	9.5545
hhgggggggooooooggggggg:	chr7:148516021-148516267(-)$1	246	155	178	12.1823
fff!!ddddoooooodddd22ff	chr1:201965163-201965418(+)$1	255	16	39	11.1619
gggggg[bboooooobb]ggggg	chr1:46736211-46736463(+)$1	252	6	29	12.9211
""cccddddoooooodddd]ccc	chr2:187370065-187370321(+)$1	256	55	78	11.6365
##gggggggooooooggggggg7	chr6:87964257-87964504(+)$1	247	151	174	13.0408
!!gggggggooooooggggggg3	chr10:103552569-103552813(-)$1	244	14	37	13.8610
dd####cccooooooccc333dd	chr14:35497218-35497427(+)$1	209	113	136	12.0477
ee####ddddoooooodddd333	chr11:129740016-129740266(-)$1	250	217	240	10.5990
bb[ccc[bboooooobb]ccc22	chr3:43740650-43740881(+)$1	231	134	157	11.6802
e!!bb[cccooooooccc]bb22	chr7:99697242-99697483(-)$1	241	125	148	11.5468
b"""a[cccooooooccca22bb	chr10:28824362-28824636(+)$1	274	170	193	11.8394
ffffeeeeeooooooeeeeeFFF	chr7:26237216-26237463(-)$1	247	215	238	10.5855
eegggggggooooooggggggg6	chr11:9309216-9309455(-)$1	239	134	157	12.8888
ggggggg[aooooooa]gggggg	chr1:67405591-67405855(+)$1	264	56	79	13.5396
hhhhhha[aooooooa]a]hhhh	chr15:63967182-63967483(-)$1	301	30	53	11.1346
ccc[eeeeeooooooeeeeeccc	chr2:61463061-61463313(-)$1	252	71	94	12.3603
ee"""bb[aooooooa]bb4444	chr17:25634655-25634887(+)$1	232	124	147	11.5543
ffffffcccooooooccc22fff	chr10:70515027-70515293(+)$1	266	149	172	11.1414

#otherMatches

#Seq PSSM
CUUGAAAUGUUGCUUCAUUUCUU	chr2:152293233-152293494(+)$1	261	205	228	11.6562
AGUGGCUGAAACUUCUCAGCAGG	chr6:27094106-27094320(-)$1	214	83	106	12.8076
AAAUUGAAUGUAUUAAGUCAAUU	chr14:102551620-102551840(-)$1	220	30	53	13.5396
UAUUCAAGUCAAACAACGUUGAA	chr5:179047862-179048115(-)$1	253	79	102	11.7497
GAUAGUUUGCAAACCUAAACUUC	chr2:70451603-70451872(-)$1	269	69	92	11.3867
AAUAUGUUGACUUAACAACUUUU	chr1:172520521-172520778(+)$1	257	51	74	11.4938
GGGCUAUACCACUUAGUAUAGUU	chr3:186505480-186505727(+)$1	247	11	34	11.3137
AGGGCAUGGCCACCCGCUGUGUU	chr4:1952689-1952943(+)$1	254	46	69	9.2751
AUCCAAGACUUGACUGUAACUGG	chr6:91245981-91246228(-)$1	247	134	157	9.9729
AGCAAGUAUUAUAGAUAUUUGCC	chr10:111881756-111882004(+)$1	248	1	24	8.7683
UUACUCUGAUACAUUUCAGUGUA	chr12:123078727-123078976(+)$1	249	33	56	10.5080
UUGUCUGUCGGUGUGGGCAGACU	chr22:20080228-20080479(+)$1	251	20	43	13.6544
CAGCGGCGCUGCACUGAGAUCGU	chr10:51049974-51050221(-)$1	247	127	150	13.2850
AGUGGCUGAAACUUCUCAGCAGG	chr6:27094120-27094350(-)$1	230	113	136	12.8076
UUUCUGUGGUUCCUUUCUCGGUU	chrX:19372502-19372750(+)$1	248	69	92	12.1389
CCUUAAGAGUUUCAUCUUUUAAA	chr11:87006715-87006966(+)$1	251	3	26	10.5005
AACCUGUAGUGUAACCUAUUUGG	chr2:191523768-191524051(+)$1	283	35	58	11.5298
ACUAUUUCAUGGCCCUGAAGAAU	chr3:47147473-47147767(-)$1	294	252	275	12.5482
CAGAUGCUGAAGAAACAAGGUCU	chr16:23502976-23503230(-)$1	254	214	237	10.9196
CCCUUUAGACCAGCCUCUGAAGG	chr8:103282247-103282518(-)$1	271	141	164	13.4048
UGAGAUGAGAAAUUGCUGGUCUC	chr3:9516640-9516895(+)$1	255	201	224	11.5466
CUGGAUAGCCCAUCAGCUCCAGA	chr1:12408776-12409051(+)$1	275	229	252	11.2407
AGAAUGAGAAACUUCUUUUAAUC	chr5:133712249-133712496(+)$1	247	67	90	11.6339
UGCUGGCAGAGCUGGCUCCAGUA	chr12:116443680-116443912(-)$1	232	133	156	10.4655
GACUUGGGGAGGUCUCUCAAGUC	chr1:27105396-27105653(+)$1	257	32	55	8.7463
AAAUAAGUGUUUAUUCCUCUUGG	chr17:29551999-29552289(+)$1	290	47	70	11.8320
UAGUAAGUUAUCAGGAAUUUACG	chr7:158450950-158451210(-)$1	260	20	43	11.4705
GCCGAGUGGACUCUACCAGGGCU	chr21:34131439-34131695(-)$1	256	177	200	11.2538
AGGAUUAUUGAAAUGGAUGAUCU	chrX:13337635-13337861(+)$1	226	127	150	13.0581
UUUUGUUAUUAUAUUAUAAUUUU	chr4:184633641-184633897(+)$1	256	57	80	13.2652
AAUAGUGAUGCUAAAAAUACUAG	chr11:45991308-45991568(-)$1	260	33	56	12.7176
AGCUCAGAGCCUCACUUCUGUUU	chr7:150066644-150066908(+)$1	264	74	97	12.9649
ACUUUGUGACAUAAAUCAUAUUU	chr19:8528232-8528503(+)$1	271	30	53	13.4304
AGACUAAACAUUGUCGUUAGUUU	chr14:35786328-35786614(+)$1	286	177	200	13.5942
CUAAAAUUGUUAUACAGUUUUGG	chr3:160131145-160131399(+)$1	254	41	64	9.5545
UUGGAUUUUGGACAGAAGAUUCA	chr7:148516021-148516267(-)$1	246	155	178	12.1823
UUGGCGGAGGCCAAUUUCCUACA	chr1:201965163-201965418(+)$1	255	16	39	11.1619
agccuuguucuugguaggaaggc	chr1:46736211-46736463(+)$1	252	6	29	12.9211
CUAAGCACUAUUUGAGGUGACUU	chr2:187370065-187370321(+)$1	256	55	78	11.6365
AAAGGCUCUUCGCUUGGAGUCUA	chr6:87964257-87964504(+)$1	247	151	174	13.0408
UAGCCAGUUAAUAUAAGUUGGUA	chr10:103552569-103552813(-)$1	244	14	37	13.8610
GCAAAAUUGAACCAACAAAUGGC	chr14:35497218-35497427(+)$1	209	113	136	12.0477
CUCUUCCAUCACCACAGAUGCCA	chr11:129740016-129740266(-)$1	250	217	240	10.5990
GUUGGCUCCCCACAUGGUGCCCU	chr3:43740650-43740881(+)$1	231	134	157	11.6802
GAACAGGUGGCUCUGUAUGUGGA	chr7:99697242-99697483(-)$1	241	125	148	11.5468
CACAGACAUGAAAAGAUGCGAGA	chr10:28824362-28824636(+)$1	274	170	193	11.8394
CUGUGUGGUAUGUAAAUUACUGA	chr7:26237216-26237463(-)$1	247	215	238	10.5855
GCUUUCCUAUUUAGUUGGGAGAC	chr11:9309216-9309455(-)$1	239	134	157	12.8888
GUAAUGUUUGUGAAGAUACAUUA	chr1:67405591-67405855(+)$1	264	56	79	13.5396
UGAUUUCUCUAGUUUGUGUAAAU	chr15:63967182-63967483(-)$1	301	30	53	11.1346
GAUUGAAGCUUUUUUGCUUUAUC	chr2:61463061-61463313(-)$1	252	71	94	12.3603
CAAUAUUGGUGUGAUUGAGGUUA	chr17:25634655-25634887(+)$1	232	124	147	11.5543
CUGGUCUCCUUCGUUGGAUGGAC	chr10:70515027-70515293(+)$1	266	149	172	11.1414

#DB
(..((((((......))))))..	chr2:152293233-152293494(+)$1	1	205	228	11.6562
(((((((((......)))))...	chr6:27094106-27094320(-)$1	1	83	106	12.8076
(((((((.(......).))))))	chr14:102551620-102551840(-)$1	1	30	53	13.5396
..(((((((......)).)))))	chr5:179047862-179048115(-)$1	1	79	102	11.7497
((.((((((......))))))))	chr2:70451603-70451872(-)$1	1	69	92	11.3867
((...((((......)))).)))	chr1:172520521-172520778(+)$1	1	51	74	11.4938
(((((((((......))))))).	chr3:186505480-186505727(+)$1	1	11	34	11.3137
((((((((((.....))))))))	chr4:1952689-1952943(+)$1	1	46	69	9.2751
.((((..((......))...)))	chr6:91245981-91246228(-)$1	1	134	157	9.9729
.(((((((((...))))))))))	chr10:111881756-111882004(+)$1	1	1	24	8.7683
((((.((((......)))).)).	chr12:123078727-123078976(+)$1	1	33	56	10.5080
..(((((((......))))))).	chr22:20080228-20080479(+)$1	1	20	43	13.6544
(((((((.(......).).))))	chr10:51049974-51050221(-)$1	1	127	150	13.2850
(((((((((......)))))...	chr6:27094120-27094350(-)$1	1	113	136	12.8076
(..(((.((......)).)))..	chrX:19372502-19372750(+)$1	1	69	92	12.1389
(.(((((((......))))))).	chr11:87006715-87006966(+)$1	1	3	26	10.5005
.(((.((((......))))..))	chr2:191523768-191524051(+)$1	1	35	58	11.5298
(...(((((......)))))..)	chr3:47147473-47147767(-)$1	1	252	275	12.5482
(((((..((......))..))))	chr16:23502976-23503230(-)$1	1	214	237	10.9196
(((((((((......))))))))	chr8:103282247-103282518(-)$1	1	141	164	13.4048
((((((.((......)).)))))	chr3:9516640-9516895(+)$1	1	201	224	11.5466
(((((..((......))))))))	chr1:12408776-12409051(+)$1	1	229	252	11.2407
.((.(((((......))))).))	chr5:133712249-133712496(+)$1	1	67	90	11.6339
((((((.((......))))))))	chr12:116443680-116443912(-)$1	1	133	156	10.4655
(((((((((.....)))))))))	chr1:27105396-27105653(+)$1	1	32	55	8.7463
((...((.(......))).))))	chr17:29551999-29552289(+)$1	1	47	70	11.8320
..(((((((......)))))))(	chr7:158450950-158451210(-)$1	1	20	43	11.4705
(((...(((......))).))))	chr21:34131439-34131695(-)$1	1	177	200	11.2538
(((((((((......))))))).	chrX:13337635-13337861(+)$1	1	127	150	13.0581
....(((((......)))))...	chr4:184633641-184633897(+)$1	1	57	80	13.2652
..(((((.(......).))))).	chr11:45991308-45991568(-)$1	1	33	56	12.7176
((..(((((......))))).))	chr7:150066644-150066908(+)$1	1	74	97	12.9649
(...(((((......)))))...	chr19:8528232-8528503(+)$1	1	30	53	13.4304
(((((((.(......))))))))	chr14:35786328-35786614(+)$1	1	177	200	13.5942
((((((((((...))))))))))	chr3:160131145-160131399(+)$1	1	41	64	9.5545
))(((((((......))))))).	chr7:148516021-148516267(-)$1	1	155	178	12.1823
(((..((((......))))..))	chr1:201965163-201965418(+)$1	1	16	39	11.1619
((((((.((......)).)))))	chr1:46736211-46736463(+)$1	1	6	29	12.9211
..(((((((......)))).)))	chr2:187370065-187370321(+)$1	1	55	78	11.6365
..(((((((......))))))).	chr6:87964257-87964504(+)$1	1	151	174	13.0408
..(((((((......))))))).	chr10:103552569-103552813(-)$1	1	14	37	13.8610
((....(((......)))...))	chr14:35497218-35497427(+)$1	1	113	136	12.0477
((....((((......))))...	chr11:129740016-129740266(-)$1	1	217	240	10.5990
((.(((.((......)).)))..	chr3:43740650-43740881(+)$1	1	134	157	11.6802
(..((.(((......))).))..	chr7:99697242-99697483(-)$1	1	125	148	11.5468
(...(.(((......))))..))	chr10:28824362-28824636(+)$1	1	170	193	11.8394
))))(((((......))))))))	chr7:26237216-26237463(-)$1	1	215	238	10.5855
(((((((((......))))))).	chr11:9309216-9309455(-)$1	1	134	157	12.8888
(((((((.(......).))))))	chr1:67405591-67405855(+)$1	1	56	79	13.5396
(((((((.(......).).))))	chr15:63967182-63967483(-)$1	1	30	53	11.1346
(((.(((((......))))))))	chr2:61463061-61463313(-)$1	1	71	94	12.3603
((...((.(......).))....	chr17:25634655-25634887(+)$1	1	124	147	11.5543
(((((((((......)))..)))	chr10:70515027-70515293(+)$1	1	149	172	11.1414

#PSSM
e : 0.16	g : 0.11	c : 0.09	f : 0.09	" : 0.05	i : 0.05	d : 0.05	! : 0.05	h : 0.05	b : 0.05	= : 0.03	: : 0.03	[ : 0.03	# : 0.03	H : 0.01	C : 0.01	
c : 0.11	" : 0.11	e : 0.11	! : 0.09	g : 0.09	f : 0.09	i : 0.07	d : 0.05	b : 0.05	h : 0.05	= : 0.03	: : 0.03	# : 0.03	H : 0.01	
g : 0.24	" : 0.11	c : 0.09	! : 0.07	e : 0.07	i : 0.07	f : 0.07	# : 0.05	[ : 0.03	= : 0.03	d : 0.03	b : 0.03	h : 0.03	
g : 0.24	" : 0.13	c : 0.11	f : 0.09	e : 0.07	i : 0.07	# : 0.05	= : 0.03	b : 0.03	[ : 0.03	h : 0.03	! : 0.03	d : 0.01	
e : 0.24	g : 0.24	f : 0.07	" : 0.07	i : 0.07	c : 0.05	= : 0.03	[ : 0.03	h : 0.03	# : 0.03	d : 0.01	! : 0.01	b : 0.01	a : 0.01	
g : 0.24	e : 0.22	d : 0.09	i : 0.07	f : 0.05	! : 0.05	= : 0.03	c : 0.03	h : 0.03	b : 0.03	# : 0.03	[ : 0.03	" : 0.01	
g : 0.22	e : 0.20	d : 0.11	[ : 0.09	c : 0.09	! : 0.05	i : 0.05	f : 0.03	= : 0.03	a : 0.03	b : 0.03	
e : 0.16	b : 0.16	g : 0.16	[ : 0.15	d : 0.11	c : 0.09	i : 0.05	f : 0.03	= : 0.03	
e : 0.16	b : 0.16	g : 0.16	a : 0.15	d : 0.11	c : 0.09	i : 0.05	f : 0.03	= : 0.03	
o : 0.90	= : 0.03	i : 0.01	n : 0.01	d : 0.01	
o : 0.92	n : 0.03	l : 0.03	
o : 0.92	n : 0.03	l : 0.03	
o : 0.92	n : 0.03	l : 0.03	
o : 0.92	n : 0.03	i : 0.01	= : 0.01	
o : 0.92	i : 0.03	n : 0.01	= : 0.01	
e : 0.16	b : 0.16	g : 0.16	a : 0.15	d : 0.09	c : 0.09	i : 0.05	f : 0.03	= : 0.03	o : 0.01	
b : 0.18	g : 0.18	e : 0.16	] : 0.11	d : 0.11	c : 0.09	i : 0.05	f : 0.03	= : 0.03	
g : 0.22	e : 0.20	d : 0.11	] : 0.09	c : 0.09	i : 0.05	f : 0.03	= : 0.03	a : 0.03	b : 0.03	3 : 0.01	2 : 0.01	h : 0.01	
e : 0.24	g : 0.24	d : 0.11	] : 0.09	i : 0.05	f : 0.03	= : 0.03	3 : 0.03	c : 0.03	2 : 0.03	h : 0.01	a : 0.01	b : 0.01	
e : 0.24	g : 0.24	i : 0.07	2 : 0.07	f : 0.05	] : 0.05	c : 0.05	= : 0.03	3 : 0.03	h : 0.03	d : 0.03	b : 0.01	4 : 0.01	
g : 0.24	3 : 0.11	e : 0.09	c : 0.09	f : 0.07	i : 0.07	2 : 0.07	= : 0.03	d : 0.03	b : 0.03	] : 0.03	h : 0.03	F : 0.01	4 : 0.01	
g : 0.26	2 : 0.09	3 : 0.09	e : 0.09	c : 0.09	i : 0.07	d : 0.05	b : 0.05	f : 0.05	= : 0.03	h : 0.03	F : 0.01	4 : 0.01	
3 : 0.11	g : 0.09	2 : 0.07	e : 0.07	c : 0.07	] : 0.07	f : 0.07	: : 0.05	d : 0.05	i : 0.05	= : 0.03	a : 0.03	F : 0.03	b : 0.03	h : 0.03	7 : 0.01	6 : 0.01	4 : 0.01	

#score	625.7584378808582
#seq	53
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_UTR_m3_run2.txt

#BEAR
ddddnnnnndddd	chr7:73008464-73008695(-)$1	231	12	25	10.6196
eeeennnnneeee	chr9:19127308-19127547(-)$1	239	185	198	9.6836
[cccnnnnncccb	chr2:241569147-241569427(+)$1	280	234	247	9.7832
[cccnnnnnccce	chr20:33511081-33511336(+)$1	255	45	58	10.1954
[cccnnnnncccb	chr19:50363739-50363982(+)$1	243	94	107	9.7832
ddddnnnnndddd	chr5:891129-891370(-)$1	241	210	223	10.6196
eeeennnnneeee	chr12:56435847-56436120(+)$1	273	224	237	9.6836
iiiinnnnniiii	chr11:125495807-125496111(+)$1	304	273	286	9.3774
ddddnnnnndddd	chr8:134276770-134277014(-)$1	244	220	233	10.6196
acccnnnnnccc]	chr19:12885334-12885588(-)$1	254	161	174	9.9727
ee[annnnna]ee	chr16:28845526-28845781(+)$1	255	231	244	9.6478
eeeennnnneeee	chr11:66384426-66384644(+)$1	218	164	177	9.6836
!cccnnnnnccc2	chr10:74033751-74034040(+)$1	289	48	61	9.8957
ddddnnnnndddd	chr2:242276689-242276942(+)$1	253	129	142	10.6196
gg[annnnna]gg	chr16:16248751-16249053(-)$1	302	251	264	9.3953
ddddnnnnndddd	chr16:11933650-11933890(-)$1	240	212	225	10.6196
g[bbnnnnnbb]g	chr3:38164483-38164733(-)$1	250	190	203	8.5033
ddddnnnnndddd	chr19:54658878-54659182(+)$1	304	45	58	10.6196
ddddnnnnndddd	chr2:230663845-230664103(-)$1	258	48	61	10.6196
fcccnnnnnccc]	chr12:53564155-53564413(-)$1	258	170	183	9.9056
eeeennnnneeee	chr5:180668500-180668806(-)$1	306	64	77	9.6836
ddddnnnnndddd	chr19:1418536-1418813(+)$1	277	70	83	10.6196
ecccnnnnnccc]	chr19:1074301-1074548(+)$1	247	84	97	10.1178
eeeennnnneeee	chr17:71202847-71203096(+)$1	249	90	103	9.6836
gg[annnnna]gg	chr11:118971425-118971740(-)$1	315	11	24	9.3953
d[bbnnnnnbb]d	chr5:891224-891449(-)$1	225	37	50	8.8056
ddddnnnnndddd	chr17:39846350-39846580(+)$1	230	21	34	10.6196
ddddnnnnndddd	chr17:57767873-57768191(+)$1	318	187	200	10.6196
ddddnnnnndddd	chr4:57302392-57302637(+)$1	245	24	37	10.6196
"""annnnna444	chr16:89717889-89718199(-)$1	310	17	30	9.0914
d[bbnnnnnbbdd	chr16:8906691-8906959(+)$1	268	20	33	9.1048
ddddnnnnndddd	chr16:67974246-67974521(-)$1	275	168	181	10.6196
cc[annnnna]cc	chr6:43594007-43594253(-)$1	246	172	185	9.5291
ddddnnnnndddd	chr7:99692956-99693223(-)$1	267	80	93	10.6196
ee[annnnna]ee	chr1:55517794-55518062(+)$1	268	148	161	9.6478
d[bbnnnnnbbdd	chr8:134251235-134251478(-)$1	243	135	148	9.1048
ddddnnnnndddd	chr17:73150251-73150555(-)$1	304	20	33	10.6196
ddddnnnnndddd	chr14:38061738-38061999(-)$1	261	26	39	10.6196
ddddnnnnndddd	chrX:51637239-51637562(+)$1	323	264	277	10.6196
icccnnnnnccc:	chr12:6643628-6643858(+)$1	230	138	151	9.0938
ddddnnnnndddd	chr2:27263088-27263323(+)$1	235	106	119	10.6196
gcccnnnnnccc]	chr14:74754370-74754690(-)$1	320	286	299	10.0654
ddddnnnnndddd	chr5:133496655-133496937(-)$1	282	198	211	10.6196
[cccnnnnnccce	chr5:32585631-32585872(+)$1	241	62	75	10.1954
eeeennnnneeee	chr4:103730897-103731145(-)$1	248	1	14	9.6836
eeeennnnneeee	chr2:128180677-128180963(+)$1	286	194	207	9.6836
ddddnnnnndddd	chr19:17449025-17449303(+)$1	278	105	118	10.6196
ggggnnnnngggg	chr2:27356044-27356309(-)$1	265	4	17	9.3121
ddddnnnnndddd	chr10:103369001-103369290(+)$1	289	155	168	10.6196
ggggnnnnngggg	chr6:126332241-126332538(+)$1	297	147	160	9.3121
ddddnnnnndddd	chr4:129003200-129003457(+)$1	257	12	25	10.6196
[cccnnnnnccc2	chr7:105162393-105162599(-)$1	206	30	43	9.8954
ddddnnnnndddd	chr1:154145260-154145534(-)$1	274	63	76	10.6196
ggggnnnnngggg	chr8:126445745-126446010(+)$1	265	91	104	9.3121
====nnnnn====	chr11:18425119-18425386(+)$1	267	237	250	9.5659
[cccnnnnnccc]	chr17:49245448-49245741(+)$1	293	219	232	10.1494
[cccnnnnnccc]	chr19:49993623-49993874(+)$1	251	195	208	10.1494
!cccnnnnnccce	chr4:727662-727912(+)$1	250	180	193	10.1958
[cccnnnnnccc]	chr9:139341250-139341584(-)$1	334	19	32	10.1494
""bbnnnnnbbdd	chr11:62338293-62338539(-)$1	246	54	67	8.8421
ccccnnnnnccc]	chr3:186502032-186502269(+)$1	237	169	182	10.0226
eeeennnnneeee	chr16:57798042-57798284(-)$1	242	65	78	9.6836
Hcccnnnnncccb	chr17:7155800-7156152(+)$1	352	290	303	8.8813
eeeennnnneeee	chr11:75113273-75113547(+)$1	274	4	17	9.6836
eeeennnnneeee	chr16:23505477-23505760(-)$1	283	196	209	9.6836
ddddnnnnndddd	chr7:1578656-1578927(+)$1	271	46	59	10.6196

#otherMatches

#Seq PSSM
CACGGCAAGUGUG	chr7:73008464-73008695(-)$1	231	12	25	10.6196
GCCCAGUUGGGGU	chr9:19127308-19127547(-)$1	239	185	198	9.6836
UACAACACCUGUG	chr2:241569147-241569427(+)$1	280	234	247	9.7832
UGUUCAAGCAGCC	chr20:33511081-33511336(+)$1	255	45	58	10.1954
CUGUGGCCAGCAG	chr19:50363739-50363982(+)$1	243	94	107	9.7832
CUGGUAUUUCCAG	chr5:891129-891370(-)$1	241	210	223	10.6196
GGUCGGCGGGAUU	chr12:56435847-56436120(+)$1	273	224	237	9.6836
CGUUGUGGGGGCG	chr11:125495807-125496111(+)$1	304	273	286	9.3774
GAACCGUAAGUUC	chr8:134276770-134277014(-)$1	244	220	233	10.6196
GGCCAGCUAGGCA	chr19:12885334-12885588(-)$1	254	161	174	9.9727
AGGCGGCGAGGCU	chr16:28845526-28845781(+)$1	255	231	244	9.6478
CCCUUACCCGGGG	chr11:66384426-66384644(+)$1	218	164	177	9.6836
UCGCUGACCGCGC	chr10:74033751-74034040(+)$1	289	48	61	9.8957
AUUGAUGAGCAAU	chr2:242276689-242276942(+)$1	253	129	142	10.6196
CUGGAUCGACGGG	chr16:16248751-16249053(-)$1	302	251	264	9.3953
CCCAGAGCAUGGG	chr16:11933650-11933890(-)$1	240	212	225	10.6196
AACUGAGUGAGGU	chr3:38164483-38164733(-)$1	250	190	203	8.5033
gggcagcuggccc	chr19:54658878-54659182(+)$1	304	45	58	10.6196
GGCCAAGAAGGCC	chr2:230663845-230664103(-)$1	258	48	61	10.6196
GCACCGACAGUGU	chr12:53564155-53564413(-)$1	258	170	183	9.9056
GUAUGAGUGAUGC	chr5:180668500-180668806(-)$1	306	64	77	9.6836
CUCUUUCCUAGAG	chr19:1418536-1418813(+)$1	277	70	83	10.6196
AGACAGAGCGUCA	chr19:1074301-1074548(+)$1	247	84	97	10.1178
UGGCAUCCAGUCA	chr17:71202847-71203096(+)$1	249	90	103	9.6836
AAGUAAGUGGGUU	chr11:118971425-118971740(-)$1	315	11	24	9.3953
UGCCGCCCAGGAA	chr5:891224-891449(-)$1	225	37	50	8.8056
UCCGGAAUAUGGA	chr17:39846350-39846580(+)$1	230	21	34	10.6196
CCAUUGUUUAUGG	chr17:57767873-57768191(+)$1	318	187	200	10.6196
CUCUUUUCUAGAG	chr4:57302392-57302637(+)$1	245	24	37	10.6196
AGGCUGGCUGAUG	chr16:89717889-89718199(-)$1	310	17	30	9.0914
AAGUAGCAAACUA	chr16:8906691-8906959(+)$1	268	20	33	9.1048
CAGCAUCAAGCUG	chr16:67974246-67974521(-)$1	275	168	181	10.6196
CAGGAGGGACGUG	chr6:43594007-43594253(-)$1	246	172	185	9.5291
GGGUGCGUAGCCC	chr7:99692956-99693223(-)$1	267	80	93	10.6196
UUGGAAAGACGGA	chr1:55517794-55518062(+)$1	268	148	161	9.6478
CCGCCUGAUGCGG	chr8:134251235-134251478(-)$1	243	135	148	9.1048
GAGCGUUCUGCUC	chr17:73150251-73150555(-)$1	304	20	33	10.6196
AGUGCCCACCACU	chr14:38061738-38061999(-)$1	261	26	39	10.6196
GGCCUCUUUGGUC	chrX:51637239-51637562(+)$1	323	264	277	10.6196
UAGGGACGGCCUG	chr12:6643628-6643858(+)$1	230	138	151	9.0938
CCAUUCUCCAUGG	chr2:27263088-27263323(+)$1	235	106	119	10.6196
CGCAUUCCCUGCU	chr14:74754370-74754690(-)$1	320	286	299	10.0654
UCCCUGUUUGGGA	chr5:133496655-133496937(-)$1	282	198	211	10.6196
GACCAAGAGGGUG	chr5:32585631-32585872(+)$1	241	62	75	10.1954
UAUAUUAUUUAUG	chr4:103730897-103731145(-)$1	248	1	14	9.6836
GCUGGACAACGGC	chr2:128180677-128180963(+)$1	286	194	207	9.6836
GCACUGGCUGUGC	chr19:17449025-17449303(+)$1	278	105	118	10.6196
UGGUAGCAAGCUA	chr2:27356044-27356309(-)$1	265	4	17	9.3121
UCUGAGCUACAGA	chr10:103369001-103369290(+)$1	289	155	168	10.6196
UUCCCUUCAGGAA	chr6:126332241-126332538(+)$1	297	147	160	9.3121
ACACAUUAAGUGU	chr4:129003200-129003457(+)$1	257	12	25	10.6196
CUUGCGUCCCAAC	chr7:105162393-105162599(-)$1	206	30	43	9.8954
GGGAUCUUUUCCU	chr1:154145260-154145534(-)$1	274	63	76	10.6196
CUCCACGGAGGAG	chr8:126445745-126446010(+)$1	265	91	104	9.3121
AGGUAAUAAAUCU	chr11:18425119-18425386(+)$1	267	237	250	9.5659
GGUGAAGUACAUG	chr17:49245448-49245741(+)$1	293	219	232	10.1494
GGCGGACCGUGCG	chr19:49993623-49993874(+)$1	251	195	208	10.1494
AGGCCAGUAGCCG	chr4:727662-727912(+)$1	250	180	193	10.1958
GCAGAGAGCCUGG	chr9:139341250-139341584(-)$1	334	19	32	10.1494
AUUGGCUGACAUC	chr11:62338293-62338539(-)$1	246	54	67	8.8421
GCAGUAUUCUUGU	chr3:186502032-186502269(+)$1	237	169	182	10.0226
CUGGUGGUCCCAG	chr16:57798042-57798284(-)$1	242	65	78	9.6836
UCCGUGGAGUGGG	chr17:7155800-7156152(+)$1	352	290	303	8.8813
cccguggguuggg	chr11:75113273-75113547(+)$1	274	4	17	9.6836
AGGCGCUUUGCUU	chr16:23505477-23505760(-)$1	283	196	209	9.6836
UCCCUGCAUGGGA	chr7:1578656-1578927(+)$1	271	46	59	10.6196

#DB
((((.....))))	chr7:73008464-73008695(-)$1	1	12	25	10.6196
((((.....))))	chr9:19127308-19127547(-)$1	1	185	198	9.6836
.(((.....))))	chr2:241569147-241569427(+)$1	1	234	247	9.7832
.(((.....))))	chr20:33511081-33511336(+)$1	1	45	58	10.1954
.(((.....))))	chr19:50363739-50363982(+)$1	1	94	107	9.7832
((((.....))))	chr5:891129-891370(-)$1	1	210	223	10.6196
((((.....))))	chr12:56435847-56436120(+)$1	1	224	237	9.6836
((((.....))))	chr11:125495807-125496111(+)$1	1	273	286	9.3774
((((.....))))	chr8:134276770-134277014(-)$1	1	220	233	10.6196
((((.....))).	chr19:12885334-12885588(-)$1	1	161	174	9.9727
((.(.....).))	chr16:28845526-28845781(+)$1	1	231	244	9.6478
((((.....))))	chr11:66384426-66384644(+)$1	1	164	177	9.6836
.(((.....))).	chr10:74033751-74034040(+)$1	1	48	61	9.8957
((((.....))))	chr2:242276689-242276942(+)$1	1	129	142	10.6196
((.(.....).))	chr16:16248751-16249053(-)$1	1	251	264	9.3953
((((.....))))	chr16:11933650-11933890(-)$1	1	212	225	10.6196
(.((.....)).)	chr3:38164483-38164733(-)$1	1	190	203	8.5033
((((.....))))	chr19:54658878-54659182(+)$1	1	45	58	10.6196
((((.....))))	chr2:230663845-230664103(-)$1	1	48	61	10.6196
((((.....))).	chr12:53564155-53564413(-)$1	1	170	183	9.9056
((((.....))))	chr5:180668500-180668806(-)$1	1	64	77	9.6836
((((.....))))	chr19:1418536-1418813(+)$1	1	70	83	10.6196
((((.....))).	chr19:1074301-1074548(+)$1	1	84	97	10.1178
((((.....))))	chr17:71202847-71203096(+)$1	1	90	103	9.6836
((.(.....).))	chr11:118971425-118971740(-)$1	1	11	24	9.3953
(.((.....)).)	chr5:891224-891449(-)$1	1	37	50	8.8056
((((.....))))	chr17:39846350-39846580(+)$1	1	21	34	10.6196
((((.....))))	chr17:57767873-57768191(+)$1	1	187	200	10.6196
((((.....))))	chr4:57302392-57302637(+)$1	1	24	37	10.6196
...(.....)...	chr16:89717889-89718199(-)$1	1	17	30	9.0914
(.((.....))))	chr16:8906691-8906959(+)$1	1	20	33	9.1048
((((.....))))	chr16:67974246-67974521(-)$1	1	168	181	10.6196
((.(.....).))	chr6:43594007-43594253(-)$1	1	172	185	9.5291
((((.....))))	chr7:99692956-99693223(-)$1	1	80	93	10.6196
((.(.....).))	chr1:55517794-55518062(+)$1	1	148	161	9.6478
(.((.....))))	chr8:134251235-134251478(-)$1	1	135	148	9.1048
((((.....))))	chr17:73150251-73150555(-)$1	1	20	33	10.6196
((((.....))))	chr14:38061738-38061999(-)$1	1	26	39	10.6196
((((.....))))	chrX:51637239-51637562(+)$1	1	264	277	10.6196
)(((.....))).	chr12:6643628-6643858(+)$1	1	138	151	9.0938
((((.....))))	chr2:27263088-27263323(+)$1	1	106	119	10.6196
((((.....))).	chr14:74754370-74754690(-)$1	1	286	299	10.0654
((((.....))))	chr5:133496655-133496937(-)$1	1	198	211	10.6196
.(((.....))))	chr5:32585631-32585872(+)$1	1	62	75	10.1954
((((.....))))	chr4:103730897-103731145(-)$1	1	1	14	9.6836
((((.....))))	chr2:128180677-128180963(+)$1	1	194	207	9.6836
((((.....))))	chr19:17449025-17449303(+)$1	1	105	118	10.6196
((((.....))))	chr2:27356044-27356309(-)$1	1	4	17	9.3121
((((.....))))	chr10:103369001-103369290(+)$1	1	155	168	10.6196
((((.....))))	chr6:126332241-126332538(+)$1	1	147	160	9.3121
((((.....))))	chr4:129003200-129003457(+)$1	1	12	25	10.6196
.(((.....))).	chr7:105162393-105162599(-)$1	1	30	43	9.8954
((((.....))))	chr1:154145260-154145534(-)$1	1	63	76	10.6196
((((.....))))	chr8:126445745-126446010(+)$1	1	91	104	9.3121
((((.....))))	chr11:18425119-18425386(+)$1	1	237	250	9.5659
.(((.....))).	chr17:49245448-49245741(+)$1	1	219	232	10.1494
.(((.....))).	chr19:49993623-49993874(+)$1	1	195	208	10.1494
.(((.....))))	chr4:727662-727912(+)$1	1	180	193	10.1958
.(((.....))).	chr9:139341250-139341584(-)$1	1	19	32	10.1494
..((.....))))	chr11:62338293-62338539(-)$1	1	54	67	8.8421
((((.....))).	chr3:186502032-186502269(+)$1	1	169	182	10.0226
((((.....))))	chr16:57798042-57798284(-)$1	1	65	78	9.6836
((((.....)))(	chr17:7155800-7156152(+)$1	1	290	303	8.8813
((((.....))))	chr11:75113273-75113547(+)$1	1	4	17	9.6836
((((.....))))	chr16:23505477-23505760(-)$1	1	196	209	9.6836
((((.....))))	chr7:1578656-1578927(+)$1	1	46	59	10.6196

#PSSM
d : 0.39	e : 0.19	[ : 0.12	g : 0.10	i : 0.03	! : 0.03	" : 0.03	c : 0.03	a : 0.01	f : 0.01	= : 0.01	H : 0.01	
d : 0.34	c : 0.27	e : 0.18	g : 0.07	[ : 0.06	" : 0.03	i : 0.01	= : 0.01	
d : 0.34	c : 0.25	e : 0.15	[ : 0.07	b : 0.07	g : 0.04	i : 0.01	" : 0.01	= : 0.01	
d : 0.34	c : 0.25	e : 0.15	a : 0.09	b : 0.07	g : 0.04	i : 0.01	= : 0.01	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
d : 0.34	c : 0.25	e : 0.15	a : 0.09	b : 0.07	g : 0.04	i : 0.01	= : 0.01	
d : 0.34	c : 0.25	e : 0.15	] : 0.07	b : 0.07	g : 0.04	i : 0.01	4 : 0.01	= : 0.01	
d : 0.39	c : 0.27	e : 0.18	g : 0.07	] : 0.03	i : 0.01	4 : 0.01	= : 0.01	
d : 0.40	e : 0.22	] : 0.12	g : 0.09	b : 0.04	2 : 0.03	i : 0.01	4 : 0.01	c : 0.01	: : 0.01	= : 0.01	

#score	657.4892631034783
#seq	66
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_CDS_m3_run1.txt

#BEAR
ea[cccooooooccc]a4444	chr1:214813814-214814104(+)$1	290	256	277	7.8831
c[ddddaooooooa]dddd]c	chr17:29161370-29161639(+)$1	269	145	166	7.8602
!!eeeeennnnneeeee22a]	chr11:65349429-65349694(+)$1	265	185	206	8.6402
gggggggnnnnnggggggg>>	chr1:203767359-203767615(+)$1	256	182	203	6.7628
d!!eeeeellleeeee22ddd	chr11:65349316-65349628(+)$1	312	239	260	8.2103
ee"""ddddllldddd22eee	chr1:155451016-155451285(-)$1	269	10	31	8.6046
c!!eeeeellleeeee22ccc	chr1:111494799-111495117(-)$1	318	144	165	8.5459
####bboooooobb4444ccc	chr1:155447776-155448047(-)$1	271	69	90	7.3938
dddddddoooooodddd]ddd	chr1:203768515-203768778(+)$1	263	128	149	9.0596
ggg[ddddmmmmdddd]gggg	chr2:170493740-170494003(+)$1	263	137	158	8.8141
(((ddddnnnnnddddeeeee	chr10:70333644-70333911(+)$1	267	93	114	7.1836
d!!ddddoooooodddddddd	chr2:55252674-55252929(-)$1	255	165	186	9.2492
eeeddddnnnnndddd]eeee	chr3:47164783-47165034(-)$1	251	129	150	9.3192
=[eeeeennnnneeeee]===	chr3:25667994-25668255(-)$1	261	216	237	8.7592
cccddddnnnnndddd]ccc:	chr1:203766895-203767175(+)$1	280	180	201	9.1380
ee"""bboooooobb333eee	chr21:38537785-38538081(+)$1	296	231	252	7.4149
ccc[ddddmmmmdddd]ccc3	chr11:5443360-5443645(-)$1	285	134	155	9.1484
[cccddddmmmmdddd22ccc	chr2:152319594-152319919(+)$1	325	9	30	9.3813
c!!ddddnnnnndddd22ccc	chr6:4032031-4032329(+)$1	298	145	166	11.1847
eeeeeeennnnneeeee333e	chr3:37368521-37368768(+)$1	247	71	92	8.5733
ddd[cccnnnnnccc]ddddF	chr7:91690501-91690774(+)$1	273	246	267	7.1799
iiiiiiinnnnniiiiiiiii	chr2:55253744-55254018(-)$1	274	160	181	7.6374
e####cccmmmmccc333eee	chr6:83877574-83877875(-)$1	301	66	87	7.8337
ddddddddllldddd4444dd	chr2:55253239-55253483(-)$1	244	5	26	8.3454
##ddddoooooodddd333cc	chr10:119043418-119043721(-)$1	303	56	77	10.1015
cc!!ddddmmmmdddd22ccc	chr2:55252344-55252637(-)$1	293	153	174	10.0297
dd"""cccmmmmccc333ddd	chr2:55252969-55253247(-)$1	278	177	198	7.9123
d[eeeeennnnneeeee4444	chr3:42680266-42680503(+)$1	237	211	232	8.6714
ccc[ddddmmmmdddd22ccc	chr12:46319944-46320217(-)$1	273	139	160	9.7530
hhhhddddmmmmdddd22hhh	chr6:136596694-136596941(-)$1	247	41	62	8.0745
cc:ddddnnnnnddddfffff	chr6:161469719-161470046(+)$1	327	225	246	7.8729
ccc[cccooooooccc]cccd	chr1:46073433-46073660(+)$1	227	56	77	8.5212
iiiiiiinnnnniiiiiiiii	chr2:55253818-55254056(-)$1	238	198	219	7.6374
ddd[ddddmmmmdddd]dddd	chr3:160143809-160144057(+)$1	248	178	199	8.5575
cceeeeennnnneeeee]ccc	chr1:40702444-40702703(+)$1	259	35	56	8.8281
ggg[ddddmmmmdddd]gggg	chr2:170493659-170493936(+)$1	277	218	239	8.8141
dd!!cccooooooccc22ddd	chr12:46320921-46321191(-)$1	270	80	101	8.9829
b!!ddddoooooodddd]bb]	chr3:42679728-42679994(+)$1	266	180	201	8.9168
ccc[ddddmmmmdddd]ccc]	chr1:241797240-241797475(-)$1	235	166	187	9.1267
"""eeeeemmmmeeeee]ccc	chr22:19431811-19432082(-)$1	271	187	208	7.8526

#otherMatches

#Seq PSSM
UUGCAAAUAUAAUUGGAGAAC	chr1:214813814-214814104(+)$1	290	256	277	7.8831
CGAUAGCAAAGAAGACUAUAG	chr17:29161370-29161639(+)$1	269	145	166	7.8602
AACUUGGUGACCUCGAGGGGG	chr11:65349429-65349694(+)$1	265	185	206	8.6402
GGGUCCCACUUAGGGACUUCA	chr1:203767359-203767615(+)$1	256	182	203	6.7628
GGAUGAGGCUCCCUCAGGCCU	chr11:65349316-65349628(+)$1	312	239	260	8.2103
CAAAACUUUUGAAAAGAAUGU	chr1:155451016-155451285(-)$1	269	10	31	8.6046
UUUUGCCUUCUGGGCAUCAUU	chr1:111494799-111495117(-)$1	318	144	165	8.5459
UUCAGAAUCUAGUCCAUUGGC	chr1:155447776-155448047(-)$1	271	69	90	7.3938
UUCACCAUAGUCUUGGUAGAG	chr1:203768515-203768778(+)$1	263	128	149	9.0596
UCCAUGUUGAAAAAUAAGGAG	chr2:170493740-170494003(+)$1	263	137	158	8.8141
UCAGUGUAACCAGCACAGUUC	chr10:70333644-70333911(+)$1	267	93	114	7.1836
AAAAGGAGAAAAUUCCUUUGC	chr2:55252674-55252929(-)$1	255	165	186	9.2492
UAGGUCUGAGAGAGGCUCUAG	chr3:47164783-47165034(-)$1	251	129	150	9.3192
UUAAAAACCUCAUUUUUUAAU	chr3:25667994-25668255(-)$1	261	216	237	8.7592
CCCCCAGUACACCUGGCGGGC	chr1:203766895-203767175(+)$1	280	180	201	9.1380
CUGUAUUGCACUGAAGAAGGU	chr21:38537785-38538081(+)$1	296	231	252	7.4149
GAUGUGGGAGGCCUCAAAUCC	chr11:5443360-5443645(-)$1	285	134	155	9.1484
UACAGAAAAUUCUUUCGUUGU	chr2:152319594-152319919(+)$1	325	9	30	9.3813
UGGCUCUGAAGAAGAGGGGGA	chr6:4032031-4032329(+)$1	298	145	166	11.1847
GUGUUUUACAAAGAAACUUAA	chr3:37368521-37368768(+)$1	247	71	92	8.5733
GCCAUUGACAACUAAGGGUAG	chr7:91690501-91690774(+)$1	273	246	267	7.1799
AGCAUAUAUCACAUGUGCUCC	chr2:55253744-55254018(-)$1	274	160	181	7.6374
GUUUGUGGUUCUCCAGUUUCA	chr6:83877574-83877875(-)$1	301	66	87	7.8337
UGCAAGAGUCACUCUAUCCUG	chr2:55253239-55253483(-)$1	244	5	26	8.3454
AAGUUUGGACUAAAGCAGCUU	chr10:119043418-119043721(-)$1	303	56	77	10.1015
UGACCUUUCUUUGAAGAACAU	chr2:55252344-55252637(-)$1	293	153	174	10.0297
CAAAAGUUGAACAGCCAGUGC	chr2:55252969-55253247(-)$1	278	177	198	7.9123
AGCUUUAAAUACUGAGGAAAA	chr3:42680266-42680503(+)$1	237	211	232	8.6714
CCAGCAGAUAGAUCUGGAUGG	chr12:46319944-46320217(-)$1	273	139	160	9.7530
CAUUUUUAUAUUUAAACCAAU	chr6:136596694-136596941(-)$1	247	41	62	8.0745
CUAGGACUGACUGUCCAGCAG	chr6:161469719-161470046(+)$1	327	225	246	7.8729
ACAGUCAAGCCAGUGGAUGUG	chr1:46073433-46073660(+)$1	227	56	77	8.5212
AGCAUAUAUCACAUGUGCUCC	chr2:55253818-55254056(-)$1	238	198	219	7.6374
GGUAUGUUUAGAGAUAGACCU	chr3:160143809-160144057(+)$1	248	178	199	8.5575
UGCCAAGCACUACUUGGAUAU	chr1:40702444-40702703(+)$1	259	35	56	8.8281
UCCAUGUUGAAAAAUAAGGAG	chr2:170493659-170493936(+)$1	277	218	239	8.8141
AUCUAGAUUUCAUUCUCCAUC	chr12:46320921-46321191(-)$1	270	80	101	8.9829
CCAUCCUCUGACAAGGAAGAA	chr3:42679728-42679994(+)$1	266	180	201	8.9168
AGCAUGCUGUCAAGCAAGCUG	chr1:241797240-241797475(-)$1	235	166	187	9.1267
GAGCGGGCACGAGUCCGGGCU	chr22:19431811-19432082(-)$1	271	187	208	7.8526

#DB
((.(((......))).)....	chr1:214813814-214814104(+)$1	1	256	277	7.8831
(.(((((......).)))).)	chr17:29161370-29161639(+)$1	1	145	166	7.8602
..(((((.....)))))..).	chr11:65349429-65349694(+)$1	1	185	206	8.6402
(((((((.....)))))))..	chr1:203767359-203767615(+)$1	1	182	203	6.7628
(..(((((...)))))..)))	chr11:65349316-65349628(+)$1	1	239	260	8.2103
((...((((...))))..)))	chr1:155451016-155451285(-)$1	1	10	31	8.6046
(..(((((...)))))..)))	chr1:111494799-111495117(-)$1	1	144	165	8.5459
....((......))....)))	chr1:155447776-155448047(-)$1	1	69	90	7.3938
(((((((......)))).)))	chr1:203768515-203768778(+)$1	1	128	149	9.0596
(((.((((....)))).))))	chr2:170493740-170494003(+)$1	1	137	158	8.8141
...((((.....)))))))))	chr10:70333644-70333911(+)$1	1	93	114	7.1836
(..((((......))))))))	chr2:55252674-55252929(-)$1	1	165	186	9.2492
(((((((.....)))).))))	chr3:47164783-47165034(-)$1	1	129	150	9.3192
(.(((((.....))))).)))	chr3:25667994-25668255(-)$1	1	216	237	8.7592
(((((((.....)))).))).	chr1:203766895-203767175(+)$1	1	180	201	9.1380
((...((......))...)))	chr21:38537785-38538081(+)$1	1	231	252	7.4149
(((.((((....)))).))).	chr11:5443360-5443645(-)$1	1	134	155	9.1484
.(((((((....))))..)))	chr2:152319594-152319919(+)$1	1	9	30	9.3813
(..((((.....))))..)))	chr6:4032031-4032329(+)$1	1	145	166	11.1847
(((((((.....)))))...)	chr3:37368521-37368768(+)$1	1	71	92	8.5733
(((.(((.....))).)))))	chr7:91690501-91690774(+)$1	1	246	267	7.1799
(((((((.....)))))))))	chr2:55253744-55254018(-)$1	1	160	181	7.6374
(....(((....)))...)))	chr6:83877574-83877875(-)$1	1	66	87	7.8337
((((((((...))))....))	chr2:55253239-55253483(-)$1	1	5	26	8.3454
..((((......))))...))	chr10:119043418-119043721(-)$1	1	56	77	10.1015
((..((((....))))..)))	chr2:55252344-55252637(-)$1	1	153	174	10.0297
((...(((....)))...)))	chr2:55252969-55253247(-)$1	1	177	198	7.9123
(.(((((.....)))))....	chr3:42680266-42680503(+)$1	1	211	232	8.6714
(((.((((....))))..)))	chr12:46319944-46320217(-)$1	1	139	160	9.7530
((((((((....))))..)))	chr6:136596694-136596941(-)$1	1	41	62	8.0745
)).((((.....))))(((((	chr6:161469719-161470046(+)$1	1	225	246	7.8729
(((.(((......))).))))	chr1:46073433-46073660(+)$1	1	56	77	8.5212
(((((((.....)))))))))	chr2:55253818-55254056(-)$1	1	198	219	7.6374
(((.((((....)))).))))	chr3:160143809-160144057(+)$1	1	178	199	8.5575
(((((((.....))))).)))	chr1:40702444-40702703(+)$1	1	35	56	8.8281
(((.((((....)))).))))	chr2:170493659-170493936(+)$1	1	218	239	8.8141
((..(((......)))..)))	chr12:46320921-46321191(-)$1	1	80	101	8.9829
(..((((......)))).)).	chr3:42679728-42679994(+)$1	1	180	201	8.9168
(((.((((....)))).))).	chr1:241797240-241797475(-)$1	1	166	187	9.1267
...(((((....))))).)))	chr22:19431811-19432082(-)$1	1	187	208	7.8526

#PSSM
c : 0.27	d : 0.22	e : 0.15	g : 0.07	# : 0.05	i : 0.05	! : 0.02	( : 0.02	= : 0.02	[ : 0.02	h : 0.02	b : 0.02	" : 0.02	
c : 0.22	! : 0.15	d : 0.15	e : 0.10	[ : 0.07	g : 0.07	# : 0.07	i : 0.05	a : 0.02	( : 0.02	h : 0.02	" : 0.02	
! : 0.17	d : 0.15	e : 0.15	c : 0.15	" : 0.10	g : 0.07	# : 0.05	i : 0.05	[ : 0.02	( : 0.02	h : 0.02	: : 0.02	
d : 0.27	e : 0.19	[ : 0.19	" : 0.07	c : 0.05	# : 0.05	i : 0.05	! : 0.05	g : 0.02	h : 0.02	
d : 0.50	e : 0.19	c : 0.10	" : 0.07	i : 0.05	g : 0.02	b : 0.02	# : 0.02	
d : 0.52	e : 0.19	c : 0.15	b : 0.05	i : 0.05	g : 0.02	
d : 0.47	e : 0.19	c : 0.12	o : 0.07	i : 0.05	a : 0.02	g : 0.02	b : 0.02	
n : 0.35	d : 0.27	o : 0.24	e : 0.07	c : 0.05	
n : 0.35	m : 0.30	o : 0.24	l : 0.07	d : 0.02	
n : 0.35	m : 0.30	o : 0.24	l : 0.10	
n : 0.35	m : 0.30	o : 0.24	l : 0.10	
n : 0.35	m : 0.30	o : 0.24	e : 0.05	l : 0.02	d : 0.02	
d : 0.42	e : 0.19	o : 0.17	c : 0.10	i : 0.05	g : 0.02	b : 0.02	
d : 0.50	e : 0.19	c : 0.15	b : 0.05	i : 0.05	a : 0.02	g : 0.02	
d : 0.50	e : 0.19	c : 0.15	i : 0.05	] : 0.02	g : 0.02	4 : 0.02	b : 0.02	
d : 0.50	e : 0.19	3 : 0.07	] : 0.05	4 : 0.05	i : 0.05	c : 0.05	g : 0.02	
2 : 0.22	] : 0.19	e : 0.17	d : 0.12	3 : 0.10	4 : 0.05	i : 0.05	a : 0.02	g : 0.02	f : 0.02	
2 : 0.24	] : 0.12	3 : 0.12	4 : 0.10	d : 0.10	c : 0.10	g : 0.07	e : 0.05	i : 0.05	f : 0.02	
c : 0.30	d : 0.19	e : 0.12	4 : 0.07	g : 0.07	3 : 0.05	i : 0.05	2 : 0.02	= : 0.02	h : 0.02	f : 0.02	b : 0.02	
c : 0.32	d : 0.19	e : 0.12	4 : 0.05	g : 0.05	i : 0.05	] : 0.02	a : 0.02	> : 0.02	= : 0.02	3 : 0.02	h : 0.02	f : 0.02	b : 0.02	
c : 0.24	d : 0.19	e : 0.15	] : 0.07	4 : 0.05	g : 0.05	i : 0.05	> : 0.02	= : 0.02	: : 0.02	3 : 0.02	F : 0.02	h : 0.02	f : 0.02	

#score	341.77769760317483
#seq	40
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_transcript_m1_run1.txt

#BEAR
:iiiiiiiii"""eeeeemmmmeeeee333iiiiiiiiiD	chr5:132165964-132166224(-)$1	260	134	174	15.4077
eeee[==============lll==============]eee	chr17:79964037-79964256(+)$1	219	75	115	17.5675
==================mmmm==================	chr16:29821948-29822203(+)$1	255	33	73	20.3018
======[bb####eeeeennnnneeeee4444bb22====	chr1:3416613-3416898(-)$1	285	65	105	15.1249
ccc[ccc[ccc[bb[cccmmmmccc]bb]ccc]ccc]ccc	chr2:242661310-242661606(+)$1	296	157	197	13.7984
=========ccc"""cccmmmmcccccc:::=========	chr20:62370396-62370650(+)$1	254	113	153	16.0266
gggggg"""cccccc[ccclllccc22ccc]ccc]ggggg	chr9:139944049-139944354(-)$1	305	35	75	14.2355
%%%ccc==========oooooo==========]ccceeee	chr8:17764820-17765053(-)$1	233	177	217	14.0579
[ccc[bb[==========nnnnn==========22bb22c	chr19:429445-429714(-)$1	269	69	109	15.3365
fff[==============mmmm==============]fff	chr17:79963869-79964111(+)$1	242	103	143	18.6524
ccc[eeeee####eeeeemmmmeeeeeeeeee]ccc4444	chr11:377627-377889(+)$1	262	127	167	12.9722
"""eeeee!!a[bb[cccmmmmccc333bba]eeeee]bb	chr20:62574261-62574535(-)$1	274	205	245	13.0733
[bb[iiiiiiiii[ddddmmmmdddd]iiiiiiiii]bb]	chr17:80203611-80203894(-)$1	283	167	207	16.3060
ffffff[dddd####cccooooooccc4444dddd333ff	chr10:3167094-3167365(+)$1	271	143	183	14.0872
iiiiiiii[a[a[eeeeemmmmeeeee]a333a]iiiiii	chr7:157680396-157680680(-)$1	284	6	46	16.6891
ccc!!ffffff####cccnnnnnccc4444ffffff333c	chr15:101899776-101900068(-)$1	292	130	170	14.2380
==================mmmm============888888	chr17:79963917-79964123(+)$1	206	13	53	15.7751
fff[==============mmmm==============]fff	chr17:79963911-79964117(+)$1	206	61	101	18.6524
[a!!a[==========oooooo==========]a22a]bb	chr19:1878331-1878603(-)$1	272	219	259	16.6678
iiiiiii[ffffff"""annnnna333ffffffiiiiiii	chr3:9984817-9985097(+)$1	280	14	54	14.0770
=[a[acccccc[ccc[bbmmmmbbcccccc]ccc]a]a==	chr22:51168440-51168777(+)$1	337	10	50	14.6123
gg!!ccc[bb"""eeeeennnnneeeee333bb22ccc]g	chr10:77449240-77449510(+)$1	270	156	196	13.9052
========&&&&&&&cccooooooccc==========22d	chr22:28803264-28803505(-)$1	241	117	157	14.4261
=======####gggggggmmmmggggggg===========	chr17:70750843-70751129(-)$1	286	92	132	17.9231
cc!!bb!!accc[addddoooooodddd]a22ccc]a22b	chr4:1804962-1805215(+)$1	253	180	220	13.1237
!iiiiiiiii!!cccrrrrrrrrrccc333iiiiiiiii]	chr16:87739628-87739857(-)$1	229	130	170	15.4061
c[a[ddddbb####ddddmmmmdddd4444bb]dddd]a]	chr12:109124841-109125115(-)$1	274	158	198	13.7011
e"""ggggggg[bb[cccoooooocccbb]ggggggg]ee	chr16:89539804-89540106(-)$1	302	35	75	14.7697
[=========="""a[bbmmmmbb]a]==========]ee	chr20:62363450-62363795(+)$1	345	101	141	19.2779
""ffffff"""bb"""bbmmmmbb4444bb4444ffffff	chr11:47574082-47574412(-)$1	330	102	142	13.4820
ee"""iiiiiiiiiddddmmmmdddd]iiiiiiiii]eee	chr19:50028560-50028804(+)$1	244	174	214	16.3265
iiii[bb!!a[ccc[bbnnnnnbb]ccc]a]bb]iiiiii	chr16:87511478-87511746(-)$1	268	203	243	13.8070
==========="""ddddoooooodddd333=========	chr20:35484902-35485171(-)$1	269	11	51	19.7837
!iiiiiiiii####ddddnnnnndddd4444iiiiiiiii	chr14:105813629-105813897(+)$1	268	179	219	18.0855
$$$ggggggg[dddd[bbmmmmbb]dddd]ggggggg22e	chr6:131200972-131201208(-)$1	236	8	48	12.9782
iiiiiiii"""ccc!!bbmmmmbb22ccc22iiiiiiiii	chr19:34984664-34985000(+)$1	336	195	235	16.6240
eeeee"""bb"""ddddammmma]dddd333bb4444eee	chr4:79124282-79124548(+)$1	266	136	176	14.1946
!iiiiiiiii[gggggggnnnnnggggggg]iiiiiiiii	chr2:135676182-135676537(+)$1	355	229	269	16.3579
===========[a!!cccnnnnnccca]===========2	chr17:79828779-79829039(-)$1	260	59	99	18.6459
f!!eeeee[ccc"""cccoooooocccccceeeee22fff	chr9:136235443-136235750(-)$1	307	255	295	13.1444
gggga!!dddd$$$$$ccclllcccdddd22a]ggggggg	chr11:65374409-65374631(-)$1	222	122	162	13.1259
ggggaggggggg!!eeeeellleeeeeggggggg]a333g	chr16:85678683-85678946(+)$1	263	164	204	14.4303
"bb####===========mmmm===========bb333gg	chr6:108883307-108883616(+)$1	309	227	267	17.3493
eee]a===========[annnnna]===========ccc[	chr2:101697909-101698175(-)$1	266	105	145	16.4534
iiiiiiii"""bb[ddddllldddd]bb333iiiiiiiii	chr20:60879683-60879933(+)$1	250	109	149	16.5042
"ccc!!ccc[bb!!ddddmmmmdddd22bb]ccc22ccc4	chr20:2633532-2633830(+)$1	298	19	59	13.5398
====[dddd!!bb[ddddmmmmdddd]bbdddd22=====	chr5:14446487-14446745(+)$1	258	182	222	14.0841
ffiiiiiiiiibb[a[bbmmmmbb]a22bb]iiiiiiiii	chr22:50909962-50910236(-)$1	274	152	192	15.9059
gggg[ggggggg!!ddddmmmmddddggggggg22ggggg	chr1:1179052-1179335(-)$1	283	223	263	15.3876
ffffffccc!!bb[ddddmmmmdddd]bb4444ccc333f	chr3:12976341-12976629(-)$1	288	166	206	14.2066
===========^^^^^^^^^^^^^^^^^^===========	chr11:75196875-75197136(-)$1	261	145	185	14.1014
==========$$$$$ddddoooooodddd==========E	chr20:61915498-61915714(+)$1	216	112	152	15.8614
ggggggg[bbccc"""aooooooa333ccc]bb]gggggg	chr2:216256825-216257100(-)$1	275	37	77	15.1992

#otherMatches

#Seq PSSM
GCGCCUCUCCCAGCUGCAGAGCUGCAGGGCGGAGAGGCGG	chr5:132165964-132166224(-)$1	260	134	174	15.4077
cgggugcaugugcaugcuuggggggcgugugcguguccuu	chr17:79964037-79964256(+)$1	219	75	115	17.5675
CCUUUUUUUUUUUUUUCCAGGGGGAGGGAGGAGAGGAAGG	chr16:29821948-29822203(+)$1	255	33	73	20.3018
GGGAUGGAGAAGGGGUCUGCUUAGGACUGAGGCUGGUAUC	chr1:3416613-3416898(-)$1	285	65	105	15.1249
GGGAGCUGCUGGUUGAGUCAGUAUUGGGGCAGAGGUGCCU	chr2:242661310-242661606(+)$1	296	157	197	13.7984
UUCUCUGGAAGGCUUGGAGCUGUCCCCUCUGGCCUUGGGG	chr20:62370396-62370650(+)$1	254	113	153	16.0266
GAGCCCCGCUCCCACUCCUUCAGGGCUGUGCGGAAGGGCU	chr9:139944049-139944354(-)$1	305	35	75	14.2355
ucagggcugucgcaguuuccacauugcgauggaccccugg	chr8:17764820-17765053(-)$1	233	177	217	14.0579
UGGGUAUAGGUACUGUGUCAUCCACACGGUAUUAGGUUUC	chr19:429445-429714(-)$1	269	69	109	15.3365
gggggcguguguguguccuugcggguacacaugcgugcuu	chr17:79963869-79964111(+)$1	242	103	143	18.6524
CCUCGCAGUGCCCCUGGGCGUUCCCAGACUGUCAGGACCC	chr11:377627-377889(+)$1	262	127	167	12.9722
CUCACAUUCAGAGCCCUCCAAAGAGUUUGCCAAAUGUUGG	chr20:62574261-62574535(-)$1	274	205	245	13.0733
UCUUCUGCUCUGUUCUUCUUGUGGGGUGCAGAGCGGCGGC	chr17:80203611-80203894(-)$1	283	167	207	16.3060
GGCAGGUGAGCACCCGGCACCCCCGCUAACCGCUUGGCCC	chr10:3167094-3167365(+)$1	271	143	183	14.0872
GGUGGGAGGCAGGGGGCGGUGGUGCCUGUGUGGGCUCUUG	chr7:157680396-157680680(-)$1	284	6	46	16.6891
GCACAGCACGGAACCGCAUGCCCUGCACACCUGUGCACCU	chr15:101899776-101900068(-)$1	292	130	170	14.2380
guccuugcgugugcguguccuugcgugugcacgugugugc	chr17:79963917-79964123(+)$1	206	13	53	15.7751
gggggcguguguguguccuugcggguacacaugcgugcuu	chr17:79963911-79964117(+)$1	206	61	101	18.6524
CCAAUGACCUGGGGGUGAGGGUGCCCCUGGGUGGGAGCUG	chr19:1878331-1878603(-)$1	272	219	259	16.6678
CAGCAGGUGGGCUCCAAGUGUCUCGGUGAGUCUCCUGCUG	chr3:9984817-9985097(+)$1	280	14	54	14.0770
gugucugcgugugugugCUGCUGCCACCGCAGCAUGUCUG	chr22:51168440-51168777(+)$1	337	10	50	14.6123
UCUUGCUCUGAACUGAGUAUGCAACUCACACCAAUAGCUG	chr10:77449240-77449510(+)$1	270	156	196	13.9052
CUGGACAAGCAUGUUGGGGAAAGGCCUUUGUUCAGUAGAG	chr22:28803264-28803505(-)$1	241	117	157	14.4261
GUGUGGGAAUUUGUGUAUGUGCAUGCACACUCACACGGGC	chr17:70750843-70751129(-)$1	286	92	132	17.9231
CACCCGCCCGGCUCUGCGCUAACCCGCAUGCUGCCUGCCC	chr4:1804962-1805215(+)$1	253	180	220	13.1237
UGCUUUUGCGCCGGCAGCCCGCCCGCCCCCCGCAAGGGCU	chr16:87739628-87739857(-)$1	229	130	170	15.4061
AGCGUGAAGCAGGGUCCCUGUGGGGAGGAGGCUUUCGAGG	chr12:109124841-109125115(-)$1	274	158	198	13.7011
CUCUCUCUCCUCCAUGACGUAUCAGUCUGUGGGAGAGCGG	chr16:89539804-89540106(-)$1	302	35	75	14.7697
ggugcaucugugugugcauguuugggugcgggugcaugug	chr20:62363450-62363795(+)$1	345	101	141	19.2779
CAGGGAGACCCGCCCUCCUCGUGGCUUUGCUUCCUCUCCC	chr11:47574082-47574412(-)$1	330	102	142	13.4820
UGCUCGUGGUGGGAAUCGUCAUCGGUGUCUUGCUACUCAC	chr19:50028560-50028804(+)$1	244	174	214	16.3265
CCCCAGGUGUGUGCGGUGAGGGGCAGCAGGUUCAGGGGGA	chr16:87511478-87511746(-)$1	268	203	243	13.8070
UUUCAGUGGCUCACUAGACUUACUUCUACAAGGCUGCUGG	chr20:35484902-35485171(-)$1	269	11	51	19.7837
UCUGGUGUUUUACAUUCAUACUUUGAGGGCCAAGCACCAG	chr14:105813629-105813897(+)$1	268	179	219	18.0855
AUGUUCUUCAAGCACGGUGCAUGCAGUGCAUGGGGGAAUU	chr6:131200972-131201208(-)$1	236	8	48	12.9782
GGCAGGGGCUUGGGAUCUCUGCAGCCCCCUUCUCCUGCCU	chr19:34984664-34985000(+)$1	336	195	235	16.6240
CCCUCUCAAUGAAUCAGCAAGGGACUGAAAGGUAACUGAG	chr4:79124282-79124548(+)$1	266	136	176	14.1946
AGGAGGAAGUGUCAUGGCGUCGGGCCGUGGAGCUUCUUCU	chr2:135676182-135676537(+)$1	355	229	269	16.3579
ggggccggggcgggaccgggcggcggcggCCCCGGCCCCA	chr17:79828779-79829039(-)$1	260	59	99	18.6459
UGAUUUCACACACUUGCGUUUCAUUGCUGUUGAAACAGCU	chr9:136235443-136235750(-)$1	307	255	295	13.1444
CUGGGAAGGUCUAGUGGGCGGGGCCGGCCGGCGCCAGGGC	chr11:65374409-65374631(-)$1	222	122	162	13.1259
CAUUCCCCACCUGGGCCAGAUCCUGGUGGGUGGGAGCGUG	chr16:85678683-85678946(+)$1	263	164	204	14.4303
AGUUUCAGCUUGUGGGUGUUAACACCUACAGGCACAUCGA	chr6:108883307-108883616(+)$1	309	227	267	17.3493
GGGUGGGGGUCCUCCCGAGAGCAUGGGGAGGGUCCCAGGG	chr2:101697909-101698175(-)$1	266	105	145	16.4534
CUGGGGCCGAGGUCCUCUCCCAGAGUACGGAGGCUCCAGG	chr20:60879683-60879933(+)$1	250	109	149	16.5042
AGGAGAUCAGUCUGCUGCAGCCGCAGGUGGGUGAGAUCCG	chr20:2633532-2633830(+)$1	298	19	59	13.5398
CGUAAUGCUUUGUGUGCUUGGGAGUAGAUGGUACCUGUGG	chr5:14446487-14446745(+)$1	258	182	222	14.0841
CUGCGCAUGGCCUGCUGCUGCGGCCGAGGGAGCCAUGUGC	chr22:50909962-50910236(-)$1	274	152	192	15.9059
AGGGAGACCCUCCUGGGUGUGGACUCGAGGGUCAGUCCUG	chr1:1179052-1179335(-)$1	283	223	263	15.3876
UCUGGGGGUAGGAGUGCUCAGGGGCAGUUGCUGGCCAGAC	chr3:12976341-12976629(-)$1	288	166	206	14.2066
GAAGGGGGGUGUCUCUCCAUCUGCAUGCUUGCCCCCCUUC	chr11:75196875-75197136(-)$1	261	145	185	14.1014
AAGGGGAGGAUCUUUGCUCUGUGACGAGUUCUUCCCUUUC	chr20:61915498-61915714(+)$1	216	112	152	15.8614
GGUUCUCUGCUGUGCAUGGGAAAAGAAACAUGCUGAGAAC	chr2:216256825-216257100(-)$1	275	37	77	15.1992

#DB
.(((((((((...(((((....)))))...))))))))))	chr5:132165964-132166224(-)$1	1	134	174	15.4077
((((.((((((((((((((...)))))))))))))).)))	chr17:79964037-79964256(+)$1	1	75	115	17.5675
((((((((((((((((((....))))))))))))))))))	chr16:29821948-29822203(+)$1	1	33	73	20.3018
((((((.((....(((((.....)))))....))..))))	chr1:3416613-3416898(-)$1	1	65	105	15.1249
(((.(((.(((.((.(((....))).)).))).))).)))	chr2:242661310-242661606(+)$1	1	157	197	13.7984
)))))))))(((...(((....))))))...(((((((((	chr20:62370396-62370650(+)$1	1	113	153	16.0266
((((((...((((((.(((...)))..))).))).)))))	chr9:139944049-139944354(-)$1	1	35	75	14.2355
...(((((((((((((......)))))))))).)))))))	chr8:17764820-17765053(-)$1	1	177	217	14.0579
.(((.((.((((((((((.....))))))))))..))..)	chr19:429445-429714(-)$1	1	69	109	15.3365
(((.((((((((((((((....)))))))))))))).)))	chr17:79963869-79964111(+)$1	1	103	143	18.6524
(((.(((((....(((((....)))))))))).)))....	chr11:377627-377889(+)$1	1	127	167	12.9722
...(((((..(.((.(((....)))...))).))))).))	chr20:62574261-62574535(-)$1	1	205	245	13.0733
.((.(((((((((.((((....)))).))))))))).)).	chr17:80203611-80203894(-)$1	1	167	207	16.3060
((((((.((((....(((......)))....))))...))	chr10:3167094-3167365(+)$1	1	143	183	14.0872
((((((((.(.(.(((((....))))).)...).))))))	chr7:157680396-157680680(-)$1	1	6	46	16.6891
(((..((((((....(((.....)))....))))))...)	chr15:101899776-101900068(-)$1	1	130	170	14.2380
((((((((((((((((((....))))))))))))......	chr17:79963917-79964123(+)$1	1	13	53	15.7751
(((.((((((((((((((....)))))))))))))).)))	chr17:79963911-79964117(+)$1	1	61	101	18.6524
.(..(.((((((((((......)))))))))).)..).))	chr19:1878331-1878603(-)$1	1	219	259	16.6678
(((((((.((((((...(.....)...)))))))))))))	chr3:9984817-9985097(+)$1	1	14	54	14.0770
(.(.(((((((.(((.((....)))))))).))).).)))	chr22:51168440-51168777(+)$1	1	10	50	14.6123
((..(((.((...(((((.....)))))...))..))).)	chr10:77449240-77449510(+)$1	1	156	196	13.9052
((((((((.......(((......)))))))))))))..)	chr22:28803264-28803505(-)$1	1	117	157	14.4261
(((((((....(((((((....))))))))))))))))))	chr17:70750843-70751129(-)$1	1	92	132	17.9231
((..((..((((.(((((......)))).)..))).)..)	chr4:1804962-1805215(+)$1	1	180	220	13.1237
.(((((((((..(((.........)))...))))))))).	chr16:87739628-87739857(-)$1	1	130	170	15.4061
(.(.((((((....((((....))))....)).)))).).	chr12:109124841-109125115(-)$1	1	158	198	13.7011
(...(((((((.((.(((......))))).))))))).))	chr16:89539804-89540106(-)$1	1	35	75	14.7697
.((((((((((...(.((....)).).)))))))))).))	chr20:62363450-62363795(+)$1	1	101	141	19.2779
..((((((...((...((....))....))....))))))	chr11:47574082-47574412(-)$1	1	102	142	13.4820
((...(((((((((((((....)))).))))))))).)))	chr19:50028560-50028804(+)$1	1	174	214	16.3265
((((.((..(.(((.((.....)).))).).)).))))))	chr16:87511478-87511746(-)$1	1	203	243	13.8070
(((((((((((...((((......))))...)))))))))	chr20:35484902-35485171(-)$1	1	11	51	19.7837
.(((((((((....((((.....))))....)))))))))	chr14:105813629-105813897(+)$1	1	179	219	18.0855
...(((((((.((((.((....)).)))).)))))))..)	chr6:131200972-131201208(-)$1	1	8	48	12.9782
((((((((...(((..((....))..)))..)))))))))	chr19:34984664-34985000(+)$1	1	195	235	16.6240
(((((...((...(((((....).))))...))....)))	chr4:79124282-79124548(+)$1	1	136	176	14.1946
.(((((((((.(((((((.....))))))).)))))))))	chr2:135676182-135676537(+)$1	1	229	269	16.3579
(((((((((((.(..(((.....)))).))))))))))).	chr17:79828779-79829039(-)$1	1	59	99	18.6459
(..(((((.(((...(((......)))))))))))..)))	chr9:136235443-136235750(-)$1	1	255	295	13.1444
(((((..((((.....(((...)))))))..).)))))))	chr11:65374409-65374631(-)$1	1	122	162	13.1259
((((((((((((..(((((...)))))))))))).)...)	chr16:85678683-85678946(+)$1	1	164	204	14.4303
.((....(((((((((((....)))))))))))))...))	chr6:108883307-108883616(+)$1	1	227	267	17.3493
))).)(((((((((((.(.....).)))))))))))(((.	chr2:101697909-101698175(-)$1	1	105	145	16.4534
((((((((...((.((((...)))).))...)))))))))	chr20:60879683-60879933(+)$1	1	109	149	16.5042
.(((..(((.((..((((....))))..)).)))..))).	chr20:2633532-2633830(+)$1	1	19	59	13.5398
((((.((((..((.((((....)))).))))))..)))))	chr5:14446487-14446745(+)$1	1	182	222	14.0841
(((((((((((((.(.((....)).)..)).)))))))))	chr22:50909962-50910236(-)$1	1	152	192	15.9059
((((.(((((((..((((....)))))))))))..)))))	chr1:1179052-1179335(-)$1	1	223	263	15.3876
(((((((((..((.((((....)))).))....)))...)	chr3:12976341-12976629(-)$1	1	166	206	14.2066
(((((((((((..................)))))))))))	chr11:75196875-75197136(-)$1	1	145	185	14.1014
((((((((((.....((((......)))))))))))))))	chr20:61915498-61915714(+)$1	1	112	152	15.8614
(((((((.(((((...(......)...))).)).))))))	chr2:216256825-216257100(-)$1	1	37	77	15.1992

#PSSM
= : 0.22	g : 0.11	f : 0.11	e : 0.09	c : 0.09	i : 0.09	[ : 0.07	" : 0.07	! : 0.05	: : 0.01	% : 0.01	$ : 0.01	
= : 0.22	i : 0.16	c : 0.11	g : 0.11	f : 0.09	e : 0.07	" : 0.05	b : 0.03	[ : 0.03	% : 0.01	a : 0.01	$ : 0.01	! : 0.01	
= : 0.22	i : 0.18	c : 0.09	g : 0.09	f : 0.09	! : 0.07	e : 0.05	" : 0.05	b : 0.03	a : 0.03	% : 0.01	$ : 0.01	
= : 0.22	i : 0.18	[ : 0.13	g : 0.11	e : 0.07	! : 0.07	c : 0.05	f : 0.05	" : 0.03	# : 0.01	] : 0.01	
= : 0.24	i : 0.18	[ : 0.09	a : 0.09	g : 0.07	e : 0.07	c : 0.05	f : 0.05	! : 0.03	b : 0.01	d : 0.01	" : 0.01	# : 0.01	
= : 0.28	i : 0.20	g : 0.11	c : 0.07	f : 0.07	b : 0.05	e : 0.05	d : 0.03	! : 0.03	[ : 0.01	" : 0.01	# : 0.01	
= : 0.30	i : 0.20	c : 0.09	g : 0.09	e : 0.05	[ : 0.03	" : 0.03	b : 0.03	f : 0.03	! : 0.03	d : 0.03	# : 0.01	
= : 0.30	i : 0.18	[ : 0.09	d : 0.07	g : 0.07	e : 0.05	c : 0.05	" : 0.03	f : 0.03	! : 0.03	b : 0.01	# : 0.01	
= : 0.30	i : 0.13	b : 0.09	c : 0.07	" : 0.07	g : 0.07	d : 0.05	! : 0.03	[ : 0.03	f : 0.03	e : 0.01	& : 0.01	# : 0.01	a : 0.01	
= : 0.28	i : 0.13	c : 0.11	b : 0.07	g : 0.07	# : 0.05	! : 0.05	" : 0.05	d : 0.03	a : 0.03	f : 0.03	& : 0.01	[ : 0.01	
= : 0.26	c : 0.13	" : 0.11	# : 0.09	[ : 0.07	i : 0.05	! : 0.05	g : 0.05	d : 0.03	f : 0.03	a : 0.01	& : 0.01	b : 0.01	$ : 0.01	
= : 0.18	c : 0.13	# : 0.11	b : 0.11	" : 0.09	[ : 0.09	g : 0.07	i : 0.03	$ : 0.03	a : 0.01	f : 0.01	& : 0.01	! : 0.01	d : 0.01	^ : 0.01	
= : 0.18	b : 0.15	" : 0.13	# : 0.11	c : 0.11	! : 0.05	i : 0.03	[ : 0.03	g : 0.03	$ : 0.03	f : 0.01	& : 0.01	d : 0.01	a : 0.01	^ : 0.01	
= : 0.18	" : 0.11	e : 0.09	c : 0.09	[ : 0.09	# : 0.07	! : 0.07	b : 0.05	g : 0.03	d : 0.03	$ : 0.03	f : 0.01	& : 0.01	a : 0.01	i : 0.01	^ : 0.01	
d : 0.24	= : 0.18	e : 0.11	" : 0.09	[ : 0.07	c : 0.05	# : 0.03	g : 0.03	a : 0.03	! : 0.03	$ : 0.03	& : 0.01	^ : 0.01	
d : 0.24	= : 0.18	c : 0.16	e : 0.11	[ : 0.09	" : 0.05	g : 0.03	r : 0.01	b : 0.01	! : 0.01	$ : 0.01	^ : 0.01	
d : 0.24	c : 0.20	= : 0.13	b : 0.13	e : 0.11	o : 0.03	g : 0.03	" : 0.01	r : 0.01	[ : 0.01	^ : 0.01	a : 0.01	
d : 0.22	c : 0.20	= : 0.13	e : 0.11	b : 0.11	o : 0.05	a : 0.05	g : 0.03	r : 0.01	n : 0.01	^ : 0.01	
m : 0.49	n : 0.18	o : 0.16	c : 0.03	= : 0.01	r : 0.01	e : 0.01	l : 0.01	^ : 0.01	d : 0.01	
m : 0.49	n : 0.18	o : 0.18	l : 0.09	r : 0.01	^ : 0.01	
m : 0.49	n : 0.18	o : 0.18	l : 0.09	r : 0.01	^ : 0.01	
m : 0.49	n : 0.18	o : 0.18	l : 0.07	r : 0.01	d : 0.01	^ : 0.01	
n : 0.16	= : 0.15	d : 0.15	o : 0.15	b : 0.13	c : 0.09	e : 0.07	g : 0.01	r : 0.01	a : 0.01	^ : 0.01	
= : 0.16	d : 0.16	c : 0.13	o : 0.13	b : 0.13	e : 0.11	a : 0.05	g : 0.03	r : 0.01	] : 0.01	^ : 0.01	
c : 0.24	d : 0.22	= : 0.16	e : 0.11	] : 0.09	3 : 0.03	g : 0.03	4 : 0.01	2 : 0.01	^ : 0.01	o : 0.01	
d : 0.26	= : 0.18	c : 0.18	e : 0.11	3 : 0.05	] : 0.03	2 : 0.03	g : 0.03	a : 0.03	4 : 0.01	^ : 0.01	
= : 0.18	c : 0.16	d : 0.13	e : 0.11	] : 0.09	2 : 0.05	3 : 0.05	4 : 0.05	g : 0.05	b : 0.03	a : 0.01	^ : 0.01	
= : 0.22	c : 0.13	d : 0.11	b : 0.09	4 : 0.09	g : 0.07	3 : 0.05	e : 0.05	i : 0.03	] : 0.03	2 : 0.03	f : 0.01	^ : 0.01	
= : 0.24	b : 0.13	3 : 0.11	4 : 0.09	c : 0.09	g : 0.07	] : 0.05	d : 0.05	i : 0.03	: : 0.01	e : 0.01	a : 0.01	f : 0.01	^ : 0.01	
= : 0.30	3 : 0.13	4 : 0.11	c : 0.09	b : 0.07	g : 0.05	i : 0.03	a : 0.03	] : 0.03	2 : 0.03	: : 0.01	e : 0.01	f : 0.01	d : 0.01	
= : 0.30	] : 0.13	4 : 0.09	3 : 0.09	i : 0.07	g : 0.07	2 : 0.05	e : 0.03	f : 0.03	c : 0.01	: : 0.01	a : 0.01	b : 0.01	d : 0.01	
= : 0.33	i : 0.16	b : 0.09	c : 0.07	g : 0.07	4 : 0.05	e : 0.03	d : 0.03	f : 0.03	] : 0.01	3 : 0.01	2 : 0.01	a : 0.01	
= : 0.30	i : 0.16	] : 0.11	b : 0.09	c : 0.07	g : 0.07	e : 0.03	d : 0.03	f : 0.03	4 : 0.03	a : 0.01	
= : 0.26	i : 0.18	c : 0.15	2 : 0.07	g : 0.07	] : 0.05	b : 0.03	e : 0.03	d : 0.03	4 : 0.03	f : 0.01	a : 0.01	
= : 0.24	i : 0.22	2 : 0.13	c : 0.09	g : 0.07	] : 0.05	e : 0.03	d : 0.03	f : 0.03	8 : 0.01	4 : 0.01	b : 0.01	
= : 0.26	i : 0.22	g : 0.11	c : 0.09	2 : 0.07	3 : 0.03	f : 0.03	a : 0.03	b : 0.01	e : 0.01	8 : 0.01	] : 0.01	d : 0.01	4 : 0.01	
= : 0.20	i : 0.18	] : 0.13	g : 0.11	3 : 0.09	c : 0.05	e : 0.03	4 : 0.03	a : 0.03	b : 0.01	8 : 0.01	d : 0.01	f : 0.01	2 : 0.01	
i : 0.18	= : 0.16	] : 0.09	3 : 0.09	e : 0.07	c : 0.07	g : 0.07	2 : 0.07	f : 0.07	4 : 0.01	b : 0.01	8 : 0.01	a : 0.01	
i : 0.18	= : 0.18	e : 0.11	g : 0.09	f : 0.09	2 : 0.07	c : 0.05	b : 0.05	3 : 0.05	4 : 0.01	8 : 0.01	] : 0.01	a : 0.01	
= : 0.15	i : 0.15	e : 0.13	g : 0.13	f : 0.11	c : 0.05	b : 0.05	] : 0.05	4 : 0.03	D : 0.01	8 : 0.01	d : 0.01	2 : 0.01	[ : 0.01	E : 0.01	

#score	819.7742434518563
#seq	53
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_CDS_m2_run2.txt

#BEAR
EEEE}DDDD}BB}CCCZZZCCC}BB}DDD	chr19:56133655-56133917(-)$1	262	198	227	14.3951
JJJJJJJ~~~~EEEEE}BB~~~~FFFFFF	chr1:154942754-154943036(-)$1	282	214	243	14.6933
EEEEEDDDDZZZDDDD}DDDDZZZIIIII	chr17:78261866-78262142(+)$1	276	149	178	14.7708
EEEEEDDDD}BB?????FFFFFF~~~~CC	chr17:42400776-42401048(-)$1	272	236	265	12.4033
EEEEEDDDDYYEEEEE}DDDDEEEEE:::	chr16:28877981-28878253(+)$1	272	239	268	17.4492
EEEEEDDDDYYCCC}CCC?????A}CCC}	chr19:10823053-10823334(+)$1	281	204	233	13.0383
JJJJJJBB}FFFFFFYYDDDDEEEEE:::	chr16:18864993-18865241(-)$1	248	215	244	11.2653
E}AYYDDDDZZZAEEEEE}BBZZZEEEEE	chr1:62262902-62263152(+)$1	250	212	241	15.7535
EEEEEDDDDYYCCCYYDDDD~~~~GGGGG	chr9:116930294-116930522(+)$1	228	156	185	14.9500
bb:FFFFFFYYEEEEEYYFFFFFF:::::	chr9:14845873-14846109(-)$1	236	161	190	10.7681
DDDD}DDDDBBCCCZZZDDDDEEEEE:::	chr16:89623223-89623474(+)$1	251	222	251	14.0418
A}CCC}BBZZZEEEEEZZZEEEEE:::::	chr3:110790736-110791007(+)$1	271	242	271	13.0972
EEEEE}CCC}EEEEE?????BB}DDDD::	chr4:74014607-74014867(-)$1	260	213	242	12.6630
EEEE~~~~BB}EEEEEYYBB}EEEEE}BB	chr19:39138258-39138533(+)$1	275	168	197	17.6668
YDDDD}BB}DDDD}BB}DDDDEEEEE}BB	chr16:30134300-30134638(-)$1	338	239	268	13.4972
DDD~~~~BBYYEEEEE}A~~~~CCCZZZF	chr9:116984402-116984645(+)$1	243	194	223	16.3337
EEEEEDDDD~~~~DDDD}CCC}CCCZZZF	chr20:39791723-39791975(+)$1	252	218	247	13.9315
FFFYYCCC}BBYYBBYYDDDDFFFFFFgg	chr11:61197163-61197414(-)$1	251	184	213	13.1604
DDD}BBYYBB}CCC}A}IIIIIIIIIYYB	chr7:100136948-100137162(+)$1	214	180	209	11.8912
::EEEEE}AYYCCCEEEEE}CCCYYGGGG	chr11:65349354-65349672(+)$1	318	237	266	13.6905
EEEYYDDDDYYCCCYYCCCBBCCCDDDD}	chr16:90028158-90028513(+)$1	355	150	179	15.0073
BBYYDDDD}BB}DDDD}DDDD}EEEEE}A	chr17:79954490-79954739(+)$1	249	183	212	15.3334
GGGG}EEEEE}BBYYEEEEEYYCCC}BB:	chr5:176516590-176516875(+)$1	285	256	285	12.2051
EEEEE}A}EEEEE~~~~DDDDEEEEE???	chrX:152938562-152938869(-)$1	307	149	178	14.9155
DDDFFFFFFYYAYYBB}BBDDDD}HHHHH	chr5:95297252-95297562(-)$1	310	158	187	13.6003
dFFFFFF}BB}EEEEE}FFFFFF}CCC}C	chr17:72868821-72869070(-)$1	249	200	229	13.4755
EEEYYBB~~~~EEEEE}DDDDBB~~~~CC	chr17:80543865-80544125(+)$1	260	216	245	17.7192
FFFYYA}DDDDEEEEE}DDDD}EEEEE::	chr17:40715934-40716215(+)$1	281	248	277	15.9017
C}DDDD?????EEEEE}BB}DDDD}CCC}	chr7:128828857-128829127(+)$1	270	184	213	13.0966
FFFFFFYYBB}FFFFFFYYFFFFFF::::	chr16:16282591-16282838(-)$1	247	182	211	11.4773
DDDYYDDDDYYEEEEE~~~~BB}DDDD::	chr1:1235884-1236137(-)$1	253	220	249	16.1589
HHHHHHH}AYYEEEEE______FFFFFF:	chr15:28501240-28501542(-)$1	302	134	163	12.2393
FFF~~~~IIIIIIIII}DDDDYYBB}A}A	chr2:85826721-85827020(-)$1	299	245	274	12.0970
}BBYYDDDDYYEEEEE}BB}CCCYYIIII	chr2:219294265-219294486(+)$1	221	126	155	16.6298
dFFFFFF~~~~EEEEE}CCCYYAYYIIII	chr1:154942582-154942841(-)$1	259	192	221	14.9354
:DDDD}EEEEEYYCCC}DDDD}BBZZZGG	chrX:79932252-79932513(-)$1	261	199	228	13.1697
EEEE}CCCFFFFFFBB}BB}DDDDFFFFF	chr4:129208543-129208815(-)$1	272	185	214	13.3075
CCYYEEEEEZZZCCCZZZCCC}BB:::::	chr14:23790819-23791054(+)$1	235	203	232	12.6886
???CCC}BBYYEEEEE}A}EEEEE}HHHH	chr19:10227304-10227597(-)$1	293	257	286	13.9692
A}EEEEE}CCCEEEEE}BB}FFFFFF::f	chr1:249151957-249152221(-)$1	264	215	244	13.8440
]a:::DDDDYYCCC}A}DDDDYYEEEEE:	chr9:116931442-116931678(+)$1	236	149	178	12.7737
CCCZZZCCCYYCCC}A~~~~CCC~~~~HH	chr22:31741455-31741759(-)$1	304	257	286	13.7557
A}EEEEE}EEEEE}AYYDDDD:EEEEEKK	chr9:135545932-135546238(+)$1	306	122	151	14.9522
IIIIIIIII}BBDDDD}BBCCC}EEEEEJ	chr20:39985755-39986138(+)$1	383	343	372	11.8862
EEZZZDDDD}BB}FFFFFF}AYYAFFFFF	chr19:54967044-54967277(+)$1	233	170	199	13.2273
EEEEE~~~~A}EEEEE}ACCC}EEEEE??	chr11:126146272-126146523(+)$1	251	170	199	16.4504
C}EEEEE}CCCYYCCC}DDDDHHHHHHHH	chr12:7342415-7342691(+)$1	276	189	218	12.6881
:EEEEEYYAYYEEEEEYYHHHHHHHH::E	chr8:145001632-145001968(-)$1	336	125	154	12.3647
ee:A}DDDD}EEEEEYYDDDD}FFFFFFd	chr19:5719781-5720044(-)$1	263	166	195	12.3666
B~~~~EEEEE}CCCZZZDDDD~~~~EEEE	chr5:14387739-14388015(+)$1	276	204	233	15.5164
}A}CCC}CCC}EEEEE}A}CCC}FFFFFF	chr17:27420999-27421229(-)$1	230	191	220	14.4180
EEEDDDD}BBZZZCCC}DDDD}AYYEEEE	chr19:1104604-1104875(+)$1	271	231	260	15.7462
FFFYYDDDD}FFFFFFYYBB}CCC}EEEE	chr17:2598695-2598959(-)$1	264	231	260	14.6748
EEEE}DDDDYYBB}BBYYCCC}EEEEE}D	chr16:16302484-16302732(-)$1	248	96	125	16.4782
FFFFFFYYBB}EEEEE}EEEEE}BBFFFF	chr12:131356547-131356955(+)$1	408	158	187	15.9336

#otherMatches

#Seq PSSM
ACGGGGGAGCGGCCCUACCGCUGCGCGCU	chr19:56133655-56133917(-)$1	262	198	227	14.3951
UUCUUCCCCCGGAUGAGCAACCUGAGGCU	chr1:154942754-154943036(-)$1	282	214	243	14.6933
GGUCCCCCCACCUCUGCUGGUGAAGGCCA	chr17:78261866-78262142(+)$1	276	149	178	14.7708
GGGGAUGGGGCAGACCGGAGAUUGGAGGC	chr17:42400776-42401048(-)$1	272	236	265	12.4033
GCCGGGGAGGAGGGGUGGCUGGGCCUCCU	chr16:28877981-28878253(+)$1	272	239	268	17.4492
CUCUUGGAUGUGACAUGUUCGACUGCGUC	chr19:10823053-10823334(+)$1	281	204	233	13.0383
UCAGCACCAACAGAACUUCACAGGUCUUU	chr16:18864993-18865241(-)$1	248	215	244	11.2653
ACCCCUCUAUCCCUCAAGUAGUUUACAUU	chr1:62262902-62263152(+)$1	250	212	241	15.7535
GCAGUCCAGUUUGAAGGUGCUCUCUGCCA	chr9:116930294-116930522(+)$1	228	156	185	14.9500
CCAACUUGGUAACCUAGCAAAGAAUCCAA	chr9:14845873-14846109(-)$1	236	161	190	10.7681
CCGAAGAGACCCAGCAGCCUCCACUUGGA	chr16:89623223-89623474(+)$1	251	222	251	14.0418
cugcugcugcugcucuucccgcugcugcu	chr3:110790736-110791007(+)$1	271	242	271	13.0972
ACUUGCGGCUUUACUUAUUGAAAGAGGAG	chr4:74014607-74014867(-)$1	260	213	242	12.6630
CCCCAGCAGCGCGGGCAAUGGCGCUGGCG	chr19:39138258-39138533(+)$1	275	168	197	17.6668
GUUGCAGUACAUCGGCGAGGGCGCGUACG	chr16:30134300-30134638(-)$1	338	239	268	13.4972
GGUGGAGCCAGCGUGUGGGGAGCCAGGAG	chr9:116984402-116984645(+)$1	243	194	223	16.3337
GCUGGUAGGUUGUGGGGGGCUGGGCUCAU	chr20:39791723-39791975(+)$1	252	218	247	13.9315
GGGUUUGUCGGGAGGGAGCGGGGCGGGCC	chr11:61197163-61197414(-)$1	251	184	213	13.1604
GGGGUCACCUACGUGGAUAUCACCGUGGG	chr7:100136948-100137162(+)$1	214	180	209	11.8912
GGAGCCUGCAGGGCACUCUGGGCAACUUG	chr11:65349354-65349672(+)$1	318	237	266	13.6905
GGAGAGCAGGAAGGGGGUUGGGGUGUGGA	chr16:90028158-90028513(+)$1	355	150	179	15.0073
ggagcaggagcgggagcgggauccccagc	chr17:79954490-79954739(+)$1	249	183	212	15.3334
CCUGGCUUCCAGCAAGCAUUCAUCUAUCA	chr5:176516590-176516875(+)$1	285	256	285	12.2051
GAGGCGUGUAUGCGGUGGCCUCGCUGGGA	chrX:152938562-152938869(-)$1	307	149	178	14.9155
GGCCUGCGGGAGGAGCAGCGCUAUGGGCU	chr5:95297252-95297562(-)$1	310	158	187	13.6003
UGCUGGCGAGAUCCCGGUGGUGUACGGGG	chr17:72868821-72869070(-)$1	249	200	229	13.4755
Cggaggggaaaggaggagaggggagacca	chr17:80543865-80544125(+)$1	260	216	245	17.7192
GCCUUGAGAAUGUAACCCCUGAGGGAGAC	chr17:40715934-40716215(+)$1	281	248	277	15.9017
ugcugcugcugcugcugcugGGGGACCCG	chr7:128828857-128829127(+)$1	270	184	213	13.0966
GGGAGAGUGCGUGGGCUACACCUGGCUCC	chr16:16282591-16282838(-)$1	247	182	211	11.4773
GCCACCUGGCACUGGACUAUGUGCUCCAG	chr1:1235884-1236137(-)$1	253	220	249	16.1589
GCAGCAUCCUCCUGAACAGCCUGAAGCAG	chr15:28501240-28501542(-)$1	302	134	163	12.2393
UGCGGGGCUGCUCUUUGUUUGCCUGCACU	chr2:85826721-85827020(-)$1	299	245	274	12.0970
UCACGAGGUAAGAGGGUCUGGAGACCCCU	chr2:219294265-219294486(+)$1	221	126	155	16.6298
CGGGCGCAGGACUCGGGUGGAAGGGGGCC	chr1:154942582-154942841(-)$1	259	192	221	14.9354
ACCAUGUUUUCAGGACGUUUCAGUAGACU	chrX:79932252-79932513(-)$1	261	199	228	13.1697
GAGCAGCUGCGCCAGUACGACGGCUCCCG	chr4:129208543-129208815(-)$1	272	185	214	13.3075
GGACCCGGUGAgggaaggagggcgagcga	chr14:23790819-23791054(+)$1	235	203	232	12.6886
AUUGGCUGUACCUCCUAUGGUUGGGAGAC	chr19:10227304-10227597(-)$1	293	257	286	13.9692
GGUGAGAGCCAGAGGGAAGAGGGACCACA	chr1:249151957-249152221(-)$1	264	215	244	13.8440
CCACCCCGGCCCUGGUAUUGGCCCCGGCG	chr9:116931442-116931678(+)$1	236	149	178	12.7737
CCUGAACCAGCAGCGCAAAAACGGCGGGC	chr22:31741455-31741759(-)$1	304	257	286	13.7557
ggagaggggggcggcgaggcgggcgggaa	chr9:135545932-135546238(+)$1	306	122	151	14.9522
GGCUGGGGCUGGGGCUGAGGCGAGGCCCC	chr20:39985755-39986138(+)$1	383	343	372	11.8862
UCCUAGAGGGGCAGGCUCGGCGACAAGGG	chr19:54967044-54967277(+)$1	233	170	199	13.2273
CUGGCAAGGAGACAUAGAAUAAUUGUCAC	chr11:126146272-126146523(+)$1	251	170	199	16.4504
CUUCUUCGGGCAGUGUCGCCGUCCAGCCU	chr12:7342415-7342691(+)$1	276	189	218	12.6881
AGCAGCGGCACGGGGAGCGGGACGUGGAG	chr8:145001632-145001968(-)$1	336	125	154	12.3647
GCGCGGAGGAAGGAgccggcggcgcgggg	chr19:5719781-5720044(-)$1	263	166	195	12.3666
CCCGCAGGAAAGAGUAAGCCAGUCUUUCA	chr5:14387739-14388015(+)$1	276	204	233	15.5164
AUGAGGAGGUGGAGGAGGCCCGGCAGUCG	chr17:27420999-27421229(-)$1	230	191	220	14.4180
UGCAGGCGCAGGAGGGCGCGGCGCCGGCG	chr19:1104604-1104875(+)$1	271	231	260	15.7462
GGGCAAGGUGCUGGAGCUGGUGCUGCGGA	chr17:2598695-2598959(-)$1	264	231	260	14.6748
UUGUUUCCCGGCUUGAAAAGGAGUGGAUG	chr16:16302484-16302732(-)$1	248	96	125	16.4782
ggggacagggguggcggcggcgggauagg	chr12:131356547-131356955(+)$1	408	158	187	15.9336

#DB
)))).)))).)).)))...))).)).)))	chr19:56133655-56133917(-)$1	1	198	227	14.3951
)))))))....))))).))....))))))	chr1:154942754-154943036(-)$1	1	214	243	14.6933
)))))))))...)))).))))...)))))	chr17:78261866-78262142(+)$1	1	149	178	14.7708
))))))))).)).....))))))....))	chr17:42400776-42401048(-)$1	1	236	265	12.4033
)))))))))..))))).)))))))))...	chr16:28877981-28878253(+)$1	1	239	268	17.4492
)))))))))..))).))).....).))).	chr19:10823053-10823334(+)$1	1	204	233	13.0383
)))))))).))))))..)))))))))...	chr16:18864993-18865241(-)$1	1	215	244	11.2653
).)..))))...)))))).))...)))))	chr1:62262902-62263152(+)$1	1	212	241	15.7535
)))))))))..)))..))))....)))))	chr9:116930294-116930522(+)$1	1	156	185	14.9500
)).))))))..)))))..)))))).....	chr9:14845873-14846109(-)$1	1	161	190	10.7681
)))).)))))))))...)))))))))...	chr16:89623223-89623474(+)$1	1	222	251	14.0418
).))).))...)))))...))))).....	chr3:110790736-110791007(+)$1	1	242	271	13.0972
))))).))).))))).....)).))))..	chr4:74014607-74014867(-)$1	1	213	242	12.6630
))))....)).)))))..)).))))).))	chr19:39138258-39138533(+)$1	1	168	197	17.6668
.)))).)).)))).)).))))))))).))	chr16:30134300-30134638(-)$1	1	239	268	13.4972
)))....))..))))).)....)))...)	chr9:116984402-116984645(+)$1	1	194	223	16.3337
)))))))))....)))).))).)))...)	chr20:39791723-39791975(+)$1	1	218	247	13.9315
)))..))).))..))..))))))))))((	chr11:61197163-61197414(-)$1	1	184	213	13.1604
))).))..)).))).).)))))))))..)	chr7:100136948-100137162(+)$1	1	180	209	11.8912
..))))).)..)))))))).)))..))))	chr11:65349354-65349672(+)$1	1	237	266	13.6905
)))..))))..)))..)))))))))))).	chr16:90028158-90028513(+)$1	1	150	179	15.0073
))..)))).)).)))).)))).))))).)	chr17:79954490-79954739(+)$1	1	183	212	15.3334
)))).))))).))..)))))..))).)).	chr5:176516590-176516875(+)$1	1	256	285	12.2051
))))).).)))))....)))))))))...	chrX:152938562-152938869(-)$1	1	149	178	14.9155
)))))))))..)..)).)))))).)))))	chr5:95297252-95297562(-)$1	1	158	187	13.6003
))))))).)).))))).)))))).))).)	chr17:72868821-72869070(-)$1	1	200	229	13.4755
)))..))....))))).))))))....))	chr17:80543865-80544125(+)$1	1	216	245	17.7192
)))..).))))))))).)))).)))))..	chr17:40715934-40716215(+)$1	1	248	277	15.9017
).)))).....))))).)).)))).))).	chr7:128828857-128829127(+)$1	1	184	213	13.0966
))))))..)).))))))..))))))....	chr16:16282591-16282838(-)$1	1	182	211	11.4773
)))..))))..)))))....)).))))..	chr1:1235884-1236137(-)$1	1	220	249	16.1589
))))))).)..)))))......)))))).	chr15:28501240-28501542(-)$1	1	134	163	12.2393
)))....))))))))).))))..)).).)	chr2:85826721-85827020(-)$1	1	245	274	12.0970
.))..))))..))))).)).)))..))))	chr2:219294265-219294486(+)$1	1	126	155	16.6298
)))))))....))))).)))..)..))))	chr1:154942582-154942841(-)$1	1	192	221	14.9354
.)))).)))))..))).)))).))...))	chrX:79932252-79932513(-)$1	1	199	228	13.1697
)))).))))))))))).)).)))))))))	chr4:129208543-129208815(-)$1	1	185	214	13.3075
))..)))))...)))...))).)).....	chr14:23790819-23791054(+)$1	1	203	232	12.6886
...))).))..))))).).))))).))))	chr19:10227304-10227597(-)$1	1	257	286	13.9692
).))))).)))))))).)).))))))..(	chr1:249151957-249152221(-)$1	1	215	244	13.8440
.)...))))..))).).))))..))))).	chr9:116931442-116931678(+)$1	1	149	178	12.7737
)))...)))..))).)....)))....))	chr22:31741455-31741759(-)$1	1	257	286	13.7557
).))))).))))).)..)))).(((((..	chr9:135545932-135546238(+)$1	1	122	151	14.9522
))))))))).)))))).))))).))))))	chr20:39985755-39986138(+)$1	1	343	372	11.8862
))...)))).)).)))))).)..))))))	chr19:54967044-54967277(+)$1	1	170	199	13.2273
)))))....).))))).)))).)))))..	chr11:126146272-126146523(+)$1	1	170	199	16.4504
).))))).)))..))).))))))))))))	chr12:7342415-7342691(+)$1	1	189	218	12.6881
.)))))..)..)))))..))))))))..(	chr8:145001632-145001968(-)$1	1	125	154	12.3647
)).).)))).)))))..)))).))))))(	chr19:5719781-5720044(-)$1	1	166	195	12.3666
)....))))).)))...))))....))))	chr5:14387739-14388015(+)$1	1	204	233	15.5164
.).))).))).))))).).))).))))))	chr17:27420999-27421229(-)$1	1	191	220	14.4180
))))))).))...))).)))).)..))))	chr19:1104604-1104875(+)$1	1	231	260	15.7462
)))..)))).))))))..)).))).))))	chr17:2598695-2598959(-)$1	1	231	260	14.6748
)))).))))..)).))..))).))))).)	chr16:16302484-16302732(-)$1	1	96	125	16.4782
))))))..)).))))).))))).))))))	chr12:131356547-131356955(+)$1	1	158	187	15.9336

#PSSM
E : 0.32	F : 0.10	D : 0.09	C : 0.07	A : 0.05	: : 0.05	J : 0.03	B : 0.03	d : 0.03	} : 0.03	b : 0.01	Y : 0.01	G : 0.01	H : 0.01	? : 0.01	] : 0.01	I : 0.01	e : 0.01	
E : 0.32	F : 0.14	D : 0.12	} : 0.10	J : 0.03	B : 0.03	C : 0.03	b : 0.01	: : 0.01	G : 0.01	H : 0.01	? : 0.01	a : 0.01	I : 0.01	e : 0.01	~ : 0.01	A : 0.01	
E : 0.38	D : 0.14	F : 0.14	: : 0.05	J : 0.03	C : 0.03	Y : 0.03	A : 0.01	G : 0.01	H : 0.01	B : 0.01	? : 0.01	I : 0.01	Z : 0.01	~ : 0.01	} : 0.01	
E : 0.32	Y : 0.18	F : 0.10	D : 0.09	C : 0.05	~ : 0.05	J : 0.03	Z : 0.03	} : 0.01	G : 0.01	H : 0.01	: : 0.01	I : 0.01	A : 0.01	
E : 0.27	Y : 0.14	} : 0.10	F : 0.10	D : 0.09	~ : 0.07	C : 0.05	J : 0.03	Z : 0.03	B : 0.01	H : 0.01	: : 0.01	I : 0.01	
D : 0.36	E : 0.14	F : 0.10	} : 0.09	~ : 0.07	C : 0.07	J : 0.03	B : 0.03	A : 0.01	H : 0.01	Z : 0.01	I : 0.01	
D : 0.34	E : 0.14	B : 0.07	F : 0.07	C : 0.07	~ : 0.07	Y : 0.07	} : 0.05	J : 0.01	A : 0.01	? : 0.01	H : 0.01	I : 0.01	
D : 0.34	} : 0.14	~ : 0.09	B : 0.09	C : 0.09	Y : 0.07	E : 0.07	F : 0.03	I : 0.03	? : 0.01	
D : 0.32	B : 0.14	E : 0.10	C : 0.09	~ : 0.07	} : 0.07	F : 0.05	A : 0.05	I : 0.03	Z : 0.01	? : 0.01	
Y : 0.29	B : 0.16	} : 0.12	E : 0.09	~ : 0.07	Z : 0.07	C : 0.05	F : 0.03	D : 0.03	? : 0.01	I : 0.01	A : 0.01	
Y : 0.29	} : 0.16	B : 0.12	Z : 0.09	E : 0.09	~ : 0.07	F : 0.05	D : 0.03	C : 0.03	? : 0.01	I : 0.01	
E : 0.43	C : 0.16	B : 0.10	Z : 0.07	F : 0.07	Y : 0.05	D : 0.01	~ : 0.01	} : 0.01	A : 0.01	I : 0.01	
E : 0.43	C : 0.18	D : 0.07	F : 0.07	Y : 0.07	} : 0.03	B : 0.03	? : 0.01	A : 0.01	~ : 0.01	I : 0.01	Z : 0.01	
E : 0.41	C : 0.25	F : 0.09	D : 0.07	} : 0.05	Y : 0.03	? : 0.01	B : 0.01	~ : 0.01	I : 0.01	
E : 0.43	C : 0.09	B : 0.09	D : 0.07	} : 0.07	F : 0.07	Y : 0.05	Z : 0.03	? : 0.01	~ : 0.01	I : 0.01	A : 0.01	
E : 0.41	Y : 0.10	C : 0.09	D : 0.07	B : 0.07	Z : 0.05	A : 0.05	F : 0.05	? : 0.03	~ : 0.01	I : 0.01	
} : 0.47	Y : 0.16	Z : 0.09	E : 0.05	~ : 0.05	? : 0.03	C : 0.03	D : 0.03	F : 0.03	_ : 0.01	
D : 0.34	B : 0.12	Y : 0.10	E : 0.07	A : 0.07	Z : 0.05	F : 0.05	C : 0.05	~ : 0.03	? : 0.01	} : 0.01	I : 0.01	_ : 0.01	
D : 0.34	B : 0.16	C : 0.10	F : 0.07	} : 0.05	~ : 0.05	E : 0.05	Z : 0.03	? : 0.03	I : 0.01	Y : 0.01	_ : 0.01	H : 0.01	
D : 0.36	C : 0.14	} : 0.10	~ : 0.07	F : 0.07	B : 0.07	E : 0.07	? : 0.03	I : 0.01	_ : 0.01	H : 0.01	
D : 0.38	C : 0.18	F : 0.09	B : 0.07	~ : 0.05	E : 0.05	} : 0.03	Y : 0.03	? : 0.01	I : 0.01	_ : 0.01	A : 0.01	H : 0.01	
E : 0.16	} : 0.16	C : 0.14	F : 0.10	Y : 0.09	~ : 0.07	B : 0.05	D : 0.05	Z : 0.03	H : 0.03	? : 0.01	I : 0.01	_ : 0.01	: : 0.01	
E : 0.23	F : 0.14	C : 0.14	} : 0.10	~ : 0.05	D : 0.05	B : 0.05	Y : 0.05	Z : 0.03	A : 0.03	H : 0.03	? : 0.01	I : 0.01	
E : 0.27	F : 0.14	B : 0.09	~ : 0.09	C : 0.09	D : 0.07	Y : 0.07	Z : 0.03	A : 0.03	} : 0.03	H : 0.03	I : 0.01	
E : 0.25	F : 0.16	~ : 0.07	} : 0.07	C : 0.07	Y : 0.07	B : 0.05	: : 0.05	D : 0.05	H : 0.05	I : 0.03	G : 0.01	Z : 0.01	
E : 0.30	F : 0.16	I : 0.07	: : 0.07	H : 0.07	} : 0.05	~ : 0.05	C : 0.05	D : 0.05	Z : 0.05	G : 0.03	
E : 0.20	: : 0.16	F : 0.14	D : 0.07	I : 0.05	~ : 0.05	C : 0.05	Z : 0.05	H : 0.05	G : 0.03	} : 0.03	Y : 0.01	B : 0.01	? : 0.01	A : 0.01	
: : 0.21	F : 0.12	E : 0.10	C : 0.07	} : 0.07	H : 0.07	I : 0.05	G : 0.05	B : 0.05	D : 0.03	Z : 0.03	? : 0.03	g : 0.01	Y : 0.01	K : 0.01	
: : 0.23	F : 0.12	E : 0.09	H : 0.07	I : 0.05	C : 0.05	} : 0.05	G : 0.05	B : 0.05	D : 0.03	A : 0.03	? : 0.03	g : 0.01	f : 0.01	K : 0.01	J : 0.01	d : 0.01	

#score	774.4664811614607
#seq	55
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_CDS_m3_run2.txt

#BEAR
e[cccqqqqqqqqccc]	chr17:76967809-76968049(-)$1	240	114	131	14.2182
fffffqqqqqqqqffff	chr17:37856360-37856653(+)$1	293	157	174	12.6882
eeeeeqqqqqqqqeeee	chr14:101200381-101200605(+)$1	224	15	32	13.4609
eeeeeqqqqqqqqeeee	chr19:51857403-51857773(-)$1	370	22	39	13.4609
[ddddqqqqqqqqdddd	chr19:6720477-6720762(-)$1	285	239	256	14.3903
:ddddqqqqqqqqdddd	chr6:138752507-138752768(-)$1	261	168	185	13.4513
gggggqqqqqqqqgggg	chr11:64897373-64897646(-)$1	273	23	40	13.4263
bbcccqqqqqqqqccc]	chr16:30748332-30748596(+)$1	264	36	53	13.6330
!ddddqqqqqqqqdddd	chr17:80036909-80037170(-)$1	261	212	229	14.4405
eeeeeqqqqqqqqeeee	chr16:2819011-2819347(+)$1	336	226	243	13.4609
eeeeeqqqqqqqqeeee	chr14:101200766-101201011(+)$1	245	202	219	13.4609
eeeeeqqqqqqqqeeee	chr7:73011659-73011938(-)$1	279	167	184	13.4609
!ddddqqqqqqqqdddd	chr19:36640813-36641108(+)$1	295	214	231	14.4405
ddcccqqqqqqqqccc]	chr7:2698507-2698747(+)$1	240	83	100	14.1040
ff[bbqqqqqqqqbb33	chr14:95053795-95054060(+)$1	265	190	207	12.5002
"ddddqqqqqqqqdddd	chr1:1374992-1375258(+)$1	266	186	203	14.3479
!ddddqqqqqqqqdddd	chr19:42753683-42753943(-)$1	260	131	148	14.4405
!ddddqqqqqqqqdddd	chr7:5352340-5352640(-)$1	300	223	240	14.4405
gggggqqqqqqqqgggg	chr20:2816682-2816958(-)$1	276	72	89	13.4263
:ddddqqqqqqqqdddd	chr17:76968530-76968793(-)$1	263	122	139	13.4513
ccc[aqqqqqqqqa]cc	chr16:28845822-28846107(+)$1	285	4	21	13.3471
a[cccqqqqqqqqccc]	chr5:176524513-176524771(+)$1	258	199	216	14.2725
cccbbqqqqqqqqbb]c	chr12:56555075-56555418(+)$1	343	40	57	12.6729
ii[bbqqqqqqqqbb]i	chr11:64534271-64534633(-)$1	362	12	29	12.5929
ccc[aqqqqqqqqaccc	chr7:75614060-75614349(+)$1	289	17	34	13.5754
fffffqqqqqqqqffff	chr3:186338401-186338654(+)$1	253	147	164	12.6882
'ddddqqqqqqqqdddd	chr1:161192034-161192254(-)$1	220	158	175	13.8049
eeeeeqqqqqqqqeeee	chr17:76968357-76968626(-)$1	269	166	183	13.4609
!!cccqqqqqqqqccc2	chr11:72425137-72425431(-)$1	294	13	30	14.1734
FFcccqqqqqqqqccc:	chr4:83763429-83763671(-)$1	242	52	69	12.2603
!ddddqqqqqqqqdddd	chr2:43451886-43452155(-)$1	269	6	23	14.4405
!ddddqqqqqqqqdddd	chr1:230846369-230846700(-)$1	331	43	60	14.4405
""cccqqqqqqqqccc]	chr12:6438966-6439298(-)$1	332	95	112	14.2081
dddddqqqqqqqqdddd	chr7:5568138-5568417(-)$1	279	203	220	14.0919
:ddddqqqqqqqqdddd	chr9:116823729-116823969(-)$1	240	211	228	13.4513
$$cccqqqqqqqqccc6	chr19:54969628-54969935(+)$1	307	153	170	13.1482
[ddddqqqqqqqqdddd	chr12:57598849-57599093(+)$1	244	72	89	14.3903
hhcccqqqqqqqqccc]	chr17:80043532-80043834(-)$1	302	88	105	13.8113
fffffqqqqqqqqffff	chr6:34212917-34213193(+)$1	276	22	39	12.6882
eeeeeqqqqqqqqeeee	chr7:73011738-73012029(-)$1	291	258	275	13.4609
fffffqqqqqqqqffff	chr17:7416315-7416592(+)$1	277	82	99	12.6882
cddddqqqqqqqqdddd	chrX:152953958-152954215(+)$1	257	17	34	14.2327
ffcccqqqqqqqqccc]	chr3:48461483-48461773(-)$1	290	261	278	14.0206
:ddddqqqqqqqqdddd	chr22:37420874-37421152(+)$1	278	242	259	13.4513
gggggqqqqqqqqgggg	chr8:145065383-145065719(+)$1	336	193	210	13.4263
eeeeeqqqqqqqqeeee	chr7:73011586-73011821(-)$1	235	50	67	13.4609
'ddddqqqqqqqqdddd	chr1:161192054-161192290(-)$1	236	194	211	13.8049
ee[bbqqqqqqqqbb]e	chr11:64897638-64897906(-)$1	268	137	154	12.6300
e[cccqqqqqqqqccc]	chr17:76967849-76968123(-)$1	274	188	205	14.2182
fffffqqqqqqqqffff	chr9:96018489-96018836(+)$1	347	182	199	12.6882
:ddddqqqqqqqqdddd	chr6:138752568-138752810(-)$1	242	210	227	13.4513
!!cccqqqqqqqqccc2	chr15:79214340-79214618(-)$1	278	68	85	14.1734
hhhhaqqqqqqqqa]hh	chr17:80046277-80046509(-)$1	232	111	128	12.3728
c[cccqqqqqqqqccc]	chr10:95360627-95360864(-)$1	237	28	45	14.2323
b[cccqqqqqqqqccc]	chr17:1648567-1648789(+)$1	222	28	45	14.0314
c!!bbqqqqqqqqbb22	chr17:7011988-7012247(-)$1	259	85	102	12.3215
gggggqqqqqqqqgggg	chr12:125284600-125284890(-)$1	290	228	245	13.4263
[ddddqqqqqqqqdddd	chr19:6720425-6720673(-)$1	248	150	167	14.3903

#otherMatches

#Seq PSSM
UCUCCUGCUCCUCGGAC	chr17:76967809-76968049(-)$1	240	114	131	14.2182
GGGGCUCCUCCUCGCCC	chr17:37856360-37856653(+)$1	293	157	174	12.6882
CAGGGACCUUCUGCCCU	chr14:101200381-101200605(+)$1	224	15	32	13.4609
CAGGGUGACCUGCCCcu	chr19:51857403-51857773(-)$1	370	22	39	13.4609
AGUGGUUAUGACUCUAC	chr19:6720477-6720762(-)$1	285	239	256	14.3903
AGGGCUCUCCUCUGCCU	chr6:138752507-138752768(-)$1	261	168	185	13.4513
CAGCUACAACCACAGCU	chr11:64897373-64897646(-)$1	273	23	40	13.4263
GGAGCAAGUGGAAGCUG	chr16:30748332-30748596(+)$1	264	36	53	13.6330
cccCGCCAUGCAACGGG	chr17:80036909-80037170(-)$1	261	212	229	14.4405
CUUGCCCAAACCUGCAA	chr16:2819011-2819347(+)$1	336	226	243	13.4609
CCCUCUCCUCACCGAGG	chr14:101200766-101201011(+)$1	245	202	219	13.4609
GCUGCCUGCUCCUGCAG	chr7:73011659-73011938(-)$1	279	167	184	13.4609
UGUGCCAAGCCUAGCAC	chr19:36640813-36641108(+)$1	295	214	231	14.4405
UCCAGAACCCCCGCUGU	chr7:2698507-2698747(+)$1	240	83	100	14.1040
GCCUCAACCUCCAGAAA	chr14:95053795-95054060(+)$1	265	190	207	12.5002
CGCCCAGCCGAGAGGGC	chr1:1374992-1375258(+)$1	266	186	203	14.3479
AGGUGCUGUCCCCCACC	chr19:42753683-42753943(-)$1	260	131	148	14.4405
AGGCCACCAAGCAGGCC	chr7:5352340-5352640(-)$1	300	223	240	14.4405
GAGCACCUGGccuugcu	chr20:2816682-2816958(-)$1	276	72	89	13.4263
AUCCUCCUCCCCCAGGA	chr17:76968530-76968793(-)$1	263	122	139	13.4513
GCUCCCUUCCUCCGCAG	chr16:28845822-28846107(+)$1	285	4	21	13.3471
GGCCUUGGGCCUUGGGG	chr5:176524513-176524771(+)$1	258	199	216	14.2725
GGCGUACCCCUCCACAG	chr12:56555075-56555418(+)$1	343	40	57	12.6729
GUGAGUGGGGGUUCUGG	chr11:64534271-64534633(-)$1	362	12	29	12.5929
CUGUCUCUUCCCUGCAG	chr7:75614060-75614349(+)$1	289	17	34	13.5754
GCGCACUACGACCUGCG	chr3:186338401-186338654(+)$1	253	147	164	12.6882
UGCUGAAUGAAUCCAGC	chr1:161192034-161192254(-)$1	220	158	175	13.8049
UGGCCCUACUGAAGGCC	chr17:76968357-76968626(-)$1	269	166	183	13.4609
UUCAGUCUUGGCUCUGU	chr11:72425137-72425431(-)$1	294	13	30	14.1734
AGCCGUAUCCCUUCGGA	chr4:83763429-83763671(-)$1	242	52	69	12.2603
CGGGCCACCAUCAGCCC	chr2:43451886-43452155(-)$1	269	6	23	14.4405
AUGGCACUUAAAGGUCA	chr1:230846369-230846700(-)$1	331	43	60	14.4405
ccuggccccaaacccaa	chr12:6438966-6439298(-)$1	332	95	112	14.2081
AGGGGUAUGCCCUCCCC	chr7:5568138-5568417(-)$1	279	203	220	14.0919
AACGGUAACAACUUCGU	chr9:116823729-116823969(-)$1	240	211	228	13.4513
CAGGCCUCCCCCAGCCC	chr19:54969628-54969935(+)$1	307	153	170	13.1482
AAGACAAGAAGGAGUUU	chr12:57598849-57599093(+)$1	244	72	89	14.3903
UGCUGGCUGGCCACGGU	chr17:80043532-80043834(-)$1	302	88	105	13.8113
GCUAACAUCCCACUUAG	chr6:34212917-34213193(+)$1	276	22	39	12.6882
GCUGCCUGCUCCUGCAG	chr7:73011738-73012029(-)$1	291	258	275	13.4609
UGGGGGCUACACACCCC	chr17:7416315-7416592(+)$1	277	82	99	12.6882
ccgcccccCGUGAggcg	chrX:152953958-152954215(+)$1	257	17	34	14.2327
CUAGUCCUUCCCUGCUC	chr3:48461483-48461773(-)$1	290	261	278	14.0206
aggugacccuccccgcu	chr22:37420874-37421152(+)$1	278	242	259	13.4513
CCCCUACCCCCAAGGGG	chr8:145065383-145065719(+)$1	336	193	210	13.4263
GCUGCCUGCUCCUGCAG	chr7:73011586-73011821(-)$1	235	50	67	13.4609
UGCUGAAUGAAUCCAGC	chr1:161192054-161192290(-)$1	236	194	211	13.8049
UCCCCCCAGCUCAGGAG	chr11:64897638-64897906(-)$1	268	137	154	12.6300
UCUCCUGCUCCUCGGAC	chr17:76967849-76968123(-)$1	274	188	205	14.2182
UGCUGCCGCCGCCCAGC	chr9:96018489-96018836(+)$1	347	182	199	12.6882
AGGGCUCUCCUCUGCCU	chr6:138752568-138752810(-)$1	242	210	227	13.4513
CAGGUACUUCCUCAUCG	chr15:79214340-79214618(-)$1	278	68	85	14.1734
UUCCCAGCUCCCCGAGG	chr17:80046277-80046509(-)$1	232	111	128	12.3728
UGCCGGGCACUGACGGA	chr10:95360627-95360864(-)$1	237	28	45	14.2323
UCGGUCUCCAUCUGCUU	chr17:1648567-1648789(+)$1	222	28	45	14.0314
UCUGCUUCAGUCUGCUU	chr17:7011988-7012247(-)$1	259	85	102	12.3215
CCUGCCAUCCUCUGUGG	chr12:125284600-125284890(-)$1	290	228	245	13.4263
AGUGGUUAUGACUCUAC	chr19:6720425-6720673(-)$1	248	150	167	14.3903

#DB
(.(((........))).	chr17:76967809-76968049(-)$1	1	114	131	14.2182
(((((........))))	chr17:37856360-37856653(+)$1	1	157	174	12.6882
(((((........))))	chr14:101200381-101200605(+)$1	1	15	32	13.4609
(((((........))))	chr19:51857403-51857773(-)$1	1	22	39	13.4609
.((((........))))	chr19:6720477-6720762(-)$1	1	239	256	14.3903
.((((........))))	chr6:138752507-138752768(-)$1	1	168	185	13.4513
(((((........))))	chr11:64897373-64897646(-)$1	1	23	40	13.4263
(((((........))).	chr16:30748332-30748596(+)$1	1	36	53	13.6330
.((((........))))	chr17:80036909-80037170(-)$1	1	212	229	14.4405
(((((........))))	chr16:2819011-2819347(+)$1	1	226	243	13.4609
(((((........))))	chr14:101200766-101201011(+)$1	1	202	219	13.4609
(((((........))))	chr7:73011659-73011938(-)$1	1	167	184	13.4609
.((((........))))	chr19:36640813-36641108(+)$1	1	214	231	14.4405
(((((........))).	chr7:2698507-2698747(+)$1	1	83	100	14.1040
((.((........))..	chr14:95053795-95054060(+)$1	1	190	207	12.5002
.((((........))))	chr1:1374992-1375258(+)$1	1	186	203	14.3479
.((((........))))	chr19:42753683-42753943(-)$1	1	131	148	14.4405
.((((........))))	chr7:5352340-5352640(-)$1	1	223	240	14.4405
(((((........))))	chr20:2816682-2816958(-)$1	1	72	89	13.4263
.((((........))))	chr17:76968530-76968793(-)$1	1	122	139	13.4513
(((.(........).))	chr16:28845822-28846107(+)$1	1	4	21	13.3471
(.(((........))).	chr5:176524513-176524771(+)$1	1	199	216	14.2725
(((((........)).)	chr12:56555075-56555418(+)$1	1	40	57	12.6729
((.((........)).)	chr11:64534271-64534633(-)$1	1	12	29	12.5929
(((.(........))))	chr7:75614060-75614349(+)$1	1	17	34	13.5754
(((((........))))	chr3:186338401-186338654(+)$1	1	147	164	12.6882
.((((........))))	chr1:161192034-161192254(-)$1	1	158	175	13.8049
(((((........))))	chr17:76968357-76968626(-)$1	1	166	183	13.4609
..(((........))).	chr11:72425137-72425431(-)$1	1	13	30	14.1734
(((((........))).	chr4:83763429-83763671(-)$1	1	52	69	12.2603
.((((........))))	chr2:43451886-43452155(-)$1	1	6	23	14.4405
.((((........))))	chr1:230846369-230846700(-)$1	1	43	60	14.4405
..(((........))).	chr12:6438966-6439298(-)$1	1	95	112	14.2081
)((((........))))	chr7:5568138-5568417(-)$1	1	203	220	14.0919
.((((........))))	chr9:116823729-116823969(-)$1	1	211	228	13.4513
..(((........))).	chr19:54969628-54969935(+)$1	1	153	170	13.1482
.((((........))))	chr12:57598849-57599093(+)$1	1	72	89	14.3903
(((((........))).	chr17:80043532-80043834(-)$1	1	88	105	13.8113
(((((........))))	chr6:34212917-34213193(+)$1	1	22	39	12.6882
(((((........))))	chr7:73011738-73012029(-)$1	1	258	275	13.4609
(((((........))))	chr17:7416315-7416592(+)$1	1	82	99	12.6882
(((((........))))	chrX:152953958-152954215(+)$1	1	17	34	14.2327
(((((........))).	chr3:48461483-48461773(-)$1	1	261	278	14.0206
.((((........))))	chr22:37420874-37421152(+)$1	1	242	259	13.4513
(((((........))))	chr8:145065383-145065719(+)$1	1	193	210	13.4263
(((((........))))	chr7:73011586-73011821(-)$1	1	50	67	13.4609
.((((........))))	chr1:161192054-161192290(-)$1	1	194	211	13.8049
((.((........)).)	chr11:64897638-64897906(-)$1	1	137	154	12.6300
(.(((........))).	chr17:76967849-76968123(-)$1	1	188	205	14.2182
(((((........))))	chr9:96018489-96018836(+)$1	1	182	199	12.6882
.((((........))))	chr6:138752568-138752810(-)$1	1	210	227	13.4513
..(((........))).	chr15:79214340-79214618(-)$1	1	68	85	14.1734
(((((........).))	chr17:80046277-80046509(-)$1	1	111	128	12.3728
(.(((........))).	chr10:95360627-95360864(-)$1	1	28	45	14.2323
(.(((........))).	chr17:1648567-1648789(+)$1	1	28	45	14.0314
(..((........))..	chr17:7011988-7012247(-)$1	1	85	102	12.3215
(((((........))))	chr12:125284600-125284890(-)$1	1	228	245	13.4263
.((((........))))	chr19:6720425-6720673(-)$1	1	150	167	14.3903

#PSSM
e : 0.18	! : 0.13	f : 0.12	c : 0.10	: : 0.08	g : 0.06	[ : 0.05	b : 0.03	d : 0.03	" : 0.03	' : 0.03	h : 0.03	a : 0.01	i : 0.01	F : 0.01	$ : 0.01	
d : 0.34	e : 0.15	f : 0.12	[ : 0.08	g : 0.06	c : 0.05	! : 0.05	h : 0.03	b : 0.01	i : 0.01	F : 0.01	" : 0.01	$ : 0.01	
d : 0.32	c : 0.29	e : 0.13	f : 0.08	g : 0.06	[ : 0.05	h : 0.01	! : 0.01	
d : 0.32	c : 0.24	e : 0.13	f : 0.08	b : 0.08	g : 0.06	[ : 0.03	h : 0.01	
d : 0.32	c : 0.24	e : 0.13	f : 0.08	b : 0.08	g : 0.06	a : 0.05	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.32	c : 0.24	e : 0.13	f : 0.08	b : 0.08	g : 0.06	a : 0.05	
d : 0.32	c : 0.25	e : 0.13	f : 0.08	b : 0.08	g : 0.06	] : 0.03	
d : 0.32	c : 0.27	e : 0.13	f : 0.08	g : 0.06	] : 0.05	3 : 0.01	h : 0.01	2 : 0.01	
d : 0.32	] : 0.17	e : 0.15	f : 0.08	g : 0.06	c : 0.05	2 : 0.05	3 : 0.01	i : 0.01	: : 0.01	6 : 0.01	h : 0.01	

#score	788.7061794977334
#seq	58
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_CDS_m3_run1.txt

#BEAR
dddeeeeettttttttttteeeeehhh	chr19:1017263-1017602(-)$1	339	43	70	22.8527
[bb[cccvvvvvvvvvvvvvcccbbbb	chr7:44799722-44800023(+)$1	301	3	30	23.1141
hhhh[ccctttttttttttccc]hhhh	chr3:48465418-48465674(-)$1	256	150	177	23.8311
""fffffftttttttttttffffff33	chr4:109543205-109543434(+)$1	229	108	135	23.7259
========ttttttttttt========	chr20:3145226-3145577(-)$1	351	113	140	25.5526
!!fffffftttttttttttffffff22	chr9:35092043-35092340(-)$1	297	125	152	23.5511
!gggggggtttttttttttggggggg=	chr17:80016220-80016606(-)$1	386	124	151	24.9734
cc!!ddddvvvvvvvvvvvvvdddd55	chr21:46876419-46876690(+)$1	271	162	189	21.4337
gggg[cccvvvvvvvvvvvvvccc]gg	chr1:155033657-155034045(+)$1	388	52	79	24.6225
iiiiiiiitttttttttttiiiiiiii	chr1:156213532-156213849(-)$1	317	24	51	25.0296
FFeeeeeuuuuuuuuuuuueeeee:::	chr13:98017268-98017548(+)$1	280	5	32	19.1027
:gggggggvvvvvvvvvvvvvgggggg	chr12:27829900-27830217(+)$1	317	270	297	23.5602
!ggggggguuuuuuuuuuuuggggggg	chr6:32157586-32157918(-)$1	332	83	110	24.6325
d[ccc[bbtttttttttttbb]ccc]d	chr12:125270635-125270877(-)$1	242	139	166	24.2450
a[accc[attttttttttta]ccc]a2	chr9:138392596-138392918(+)$1	322	21	48	24.7485
!dddd[bbvvvvvvvvvvvvvbb22dd	chr19:11339817-11340086(-)$1	269	220	247	22.6111
#gggggggvvvvvvvvvvvvvgggggg	chr9:90345912-90346229(+)$1	317	273	300	24.5765
[ddddwwwwwwwwwwwwwwdddd]ddd	chr17:3559767-3560065(-)$1	298	21	48	20.8045
ccceeeeeuuuuuuuuuuuueeeee44	chr6:128327063-128327342(-)$1	279	140	167	23.1451
eeeeeccctttttttttttccc4444e	chr8:145623242-145623511(-)$1	269	142	169	23.9492
:ccc[cccwwwwwwwwwwwwwwccc]c	chr1:988756-989036(+)$1	280	149	176	21.7849
========ttttttttttt========	chr19:58991073-58991409(-)$1	336	217	244	25.5526
[eeeeeyyyyyyyyyyyyyyyyeeeee	chr9:131904718-131904968(+)$1	250	193	220	20.7654
hhh[bbwwwwwwwwwwwwwwbbhhhhh	chr13:113761051-113761290(+)$1	239	86	113	20.9759
f!!bbccctttttttttttccc]bb22	chr11:118984316-118984626(+)$1	310	249	276	23.3845
eeeee[bbvvvvvvvvvvvvvbbeeee	chr10:81471607-81471880(-)$1	273	219	246	22.7340
========ttttttttttt========	chr14:103570900-103571184(+)$1	284	30	57	25.5526
!a[cccbbtttttttttttbb]ccc]a	chr4:140651654-140651929(+)$1	275	161	188	24.5128
[ccc[ccctttttttttttcccccc]d	chr22:19958703-19958976(-)$1	273	197	224	25.0975
!eeeeevvvvvvvvvvvvveeeee22b	chr16:29822296-29822561(+)$1	265	181	208	22.6525
ggggyyyyyyyyyyyyyyyyggggggg	chr2:242755985-242756252(+)$1	267	191	218	21.3199
gggggggauuuuuuuuuuuua]ggggg	chr1:155034212-155034485(+)$1	273	17	44	24.7578
ddddddduuuuuuuuuuuudddd]ddd	chr11:65325234-65325513(-)$1	279	3	30	22.1747
"""cccvvvvvvvvvvvvvccc]gggg	chr4:52709643-52709970(+)$1	327	12	39	24.1965
c[eeeeeuuuuuuuuuuuueeeeeccc	chr1:33820531-33820889(+)$1	358	145	172	23.1826
!gggggggtttttttttttggggggg=	chr17:80016432-80016722(-)$1	290	240	267	24.9734
dd!!cccuuuuuuuuuuuuccc22ddd	chr11:68213010-68213305(+)$1	295	11	38	23.0763
$bb[cccvvvvvvvvvvvvvccc]bb3	chr11:47435356-47435629(+)$1	273	237	264	23.6050
!ffffffuuuuuuuuuuuuffffff33	chr19:17313654-17313946(+)$1	292	162	189	23.1704
[ccccccuuuuuuuuuuuuccc]ccci	chr20:34214429-34214713(-)$1	284	206	233	24.3912
d[ccc[bbtttttttttttbb]ccc]d	chr12:125270596-125270823(-)$1	227	85	112	24.2450
dddd[cccuuuuuuuuuuuuccc]ddd	chr4:1804588-1804828(+)$1	240	134	161	23.5871
d[ccc[bbtttttttttttbb]ccc]d	chr12:125270623-125270835(-)$1	212	97	124	24.2450
========ttttttttttt========	chr17:7311431-7311690(+)$1	259	79	106	25.5526
eee[ddddtttttttttttdddd22ee	chr5:65364524-65364839(+)$1	315	152	179	22.5483
hhh[bbwwwwwwwwwwwwwwbbhhhhh	chr13:113761090-113761338(+)$1	248	47	74	20.9759
]ccc:cccvvvvvvvvvvvvvccc:::	chr14:105934556-105934788(+)$1	232	62	89	19.9636
========uuuuuuuuuuuu=======	chr3:183882744-183883023(+)$1	279	236	263	25.1406
:ccc!!bbvvvvvvvvvvvvvbb]ccc	chr6:131199239-131199503(-)$1	264	87	114	22.6528
::ddddbbtttttttttttbb]dddde	chr15:22956004-22956257(+)$1	253	159	186	20.9808
========ttttttttttt========	chr19:58990974-58991255(-)$1	281	63	90	25.5526
agggggggvvvvvvvvvvvvvgggggg	chr1:3417721-3418018(-)$1	297	167	194	24.4939
dddeeeeewwwwwwwwwwwwwweeeee	chr11:62156753-62157123(+)$1	370	159	186	21.0528
a[eeeeeuuuuuuuuuuuueeeee]a]	chr20:35176475-35176758(-)$1	283	121	148	23.3165
ffff[bbuuuuuuuuuuuubb]fffff	chr16:29818015-29818236(+)$1	221	77	104	22.2220
========vvvvvvvvvvvvv======	chr6:33248311-33248602(-)$1	291	87	114	25.0815
hhhhhhvvvvvvvvvvvvvhhhhhhhh	chr19:6745983-6746230(+)$1	247	62	89	21.6647
"""dddduuuuuuuuuuuudddd]ccc	chr17:78397699-78397986(+)$1	287	60	87	23.0378
!!fffffftttttttttttffffff22	chr9:35092145-35092458(-)$1	313	243	270	23.5511

#otherMatches

#Seq PSSM
GCUGACCCGGAGGAAGGAAGGGUCAUA	chr19:1017263-1017602(-)$1	339	43	70	22.8527
UGCAUGCAGUUUUCUCUCCCGCAGCCC	chr7:44799722-44800023(+)$1	301	3	30	23.1141
UGUUUGUGGGGCGAGGAUACACCAGCA	chr3:48465418-48465674(-)$1	256	150	177	23.8311
AAGCACCAAAAUCUGCAUGUGGUGUGU	chr4:109543205-109543434(+)$1	229	108	135	23.7259
CCUCCUUGGUUUCCGUGGACGGGGAGG	chr20:3145226-3145577(-)$1	351	113	140	25.5526
UUGGCUGUGUUCUUCUCUGAUAGUUUU	chr9:35092043-35092340(-)$1	297	125	152	23.5511
GGCCUGGAGGGGAAGAGAGUCUGGGUG	chr17:80016220-80016606(-)$1	386	124	151	24.9734
CACUGCCACCCCUUCCUCGCCUGGUUC	chr21:46876419-46876690(+)$1	271	162	189	21.4337
AGUGUGUGCACACCUCCUCCCCACUCG	chr1:155033657-155034045(+)$1	388	52	79	24.6225
CUCAGCCUGGAACCAACAGGGGCUGAG	chr1:156213532-156213849(-)$1	317	24	51	25.0296
ACUAACCCUACUUAUUUCUGGUUGUGC	chr13:98017268-98017548(+)$1	280	5	32	19.1027
CCUUCUGCUAAAAAGGACUCUGUAGAG	chr12:27829900-27830217(+)$1	317	270	297	23.5602
ACCCCCGGGGGAGCCGGGAGCCGGGGG	chr6:32157586-32157918(-)$1	332	83	110	24.6325
CAGCACGCUUGCGUCUUUUGCAUGCCG	chr12:125270635-125270877(-)$1	242	139	166	24.2450
GACCCUGGGGAGGAGCAUGCGAGGAGG	chr9:138392596-138392918(+)$1	322	21	48	24.7485
AAGGGCACUUCCACUCCUCUUGUCCCC	chr19:11339817-11340086(-)$1	269	220	247	22.6111
CUCUAUUUUAAUUACUGCUAUAAAUAG	chr9:90345912-90346229(+)$1	317	273	300	24.5765
CGCGUGCAGGCUGAAGAAGACGUCGUU	chr17:3559767-3560065(-)$1	298	21	48	20.8045
AGGAGGAGCUACUAUUCUUACUCCUAC	chr6:128327063-128327342(-)$1	279	140	167	23.1451
GCUGACUGCCCCAUGCCUACAGUGAAU	chr8:145623242-145623511(-)$1	269	142	169	23.9492
UGGCUGGCCCAUCUGUCCUCCCGCCCG	chr1:988756-989036(+)$1	280	149	176	21.7849
GUAGGGCUGGUAGCACAGAGGCCCUGC	chr19:58991073-58991409(-)$1	336	217	244	25.5526
CUGGGGCUCCUGCUUCCUCCUACCCCA	chr9:131904718-131904968(+)$1	250	193	220	20.7654
CCGGCCACCUUCCUGCCCCAGGCGGGG	chr13:113761051-113761290(+)$1	239	86	113	20.9759
GGACAGCCACCUUUCCAACGGCUUGGA	chr11:118984316-118984626(+)$1	310	249	276	23.3845
CUGCCUCGUCCCUGAGAGUCCCGGGCA	chr10:81471607-81471880(-)$1	273	219	246	22.7340
CUCCAGUUGGGCGGCUGAAAGCUGGAG	chr14:103570900-103571184(+)$1	284	30	57	25.5526
CUGCUCCUGGGAAGACAAGAGAGAGGG	chr4:140651654-140651929(+)$1	275	161	188	24.5128
AGCCUCAGCCCGUUGAUUCCUGGGUCU	chr22:19958703-19958976(-)$1	273	197	224	25.0975
AAAUCCUGUUUCUGGCUCUGGAUUGAA	chr16:29822296-29822561(+)$1	265	181	208	22.6525
CCGUCUUCCUCUUCUUCAUCGCGGUGC	chr2:242755985-242756252(+)$1	267	191	218	21.3199
GGCAUGCCUCCAAGCCCUCUGCGCAUG	chr1:155034212-155034485(+)$1	273	17	44	24.7578
CCGGCCCUCUACUCCCUUcgggcgcgg	chr11:65325234-65325513(-)$1	279	3	30	22.1747
ggaggugagggggguggggacuggCUC	chr4:52709643-52709970(+)$1	327	12	39	24.1965
ACGCUUGGAgagacugaggcgagcugg	chr1:33820531-33820889(+)$1	358	145	172	23.1826
GGCCUGGAGGGGAAGAGAGUCUGGGUG	chr17:80016432-80016722(-)$1	290	240	267	24.9734
UGUUCCCAUUAUUCCGCAGGGGCUCGG	chr11:68213010-68213305(+)$1	295	11	38	23.0763
ugccuggaauguucucccgcccacgcu	chr11:47435356-47435629(+)$1	273	237	264	23.6050
AGUGUGUUUUUCCCCCGGCAUAUACGG	chr19:17313654-17313946(+)$1	292	162	189	23.1704
CUACCGCCGGUUCCAGAAUGUGAGUAG	chr20:34214429-34214713(-)$1	284	206	233	24.3912
CAGCACGCUUGCGUCUUUUGCAUGCCG	chr12:125270596-125270823(-)$1	227	85	112	24.2450
GUCGAGCCACCAAUUUCAUAGGCGUGG	chr4:1804588-1804828(+)$1	240	134	161	23.5871
CAGCACGCUUGCGUCUUUUGCAUGCCG	chr12:125270623-125270835(-)$1	212	97	124	24.2450
cccccuucucucucucucCGAGGGGGG	chr17:7311431-7311690(+)$1	259	79	106	25.5526
CUGUUAAAUCUAUCCCCUCUUUAUUCA	chr5:65364524-65364839(+)$1	315	152	179	22.5483
CCGGCCACCUUCCUGCCCCAGGCGGGG	chr13:113761090-113761338(+)$1	248	47	74	20.9759
UGGCUCACUAACCUAAAGCAUGUGUUU	chr14:105934556-105934788(+)$1	232	62	89	19.9636
CUCGGAUUGAGCGGGUAUGGGGUCUGG	chr3:183882744-183883023(+)$1	279	236	263	25.1406
CCCUUUGUUACGUUACAUAUUGCUAGG	chr6:131199239-131199503(-)$1	264	87	114	22.6528
CCUACCCCUUUUAACCUUUGGUGGUAA	chr15:22956004-22956257(+)$1	253	159	186	20.9808
GUAGGGCUGGUAGCACAGAGGCCCUGC	chr19:58990974-58991255(-)$1	281	63	90	25.5526
GGCUGGGCUGCCAGGAGAUCUGCCCAG	chr1:3417721-3418018(-)$1	297	167	194	24.4939
guaucuggcgccacuguuuuuacuaga	chr11:62156753-62157123(+)$1	370	159	186	21.0528
UUCCACUUGCAUGCAGAGUGGUGGUAG	chr20:35176475-35176758(-)$1	283	121	148	23.3165
UGGGCGGCCUCAUGAACUCCUUCCCGC	chr16:29818015-29818236(+)$1	221	77	104	22.2220
CUGCCCCUUUGAAGAUGUGCUGGGGGU	chr6:33248311-33248602(-)$1	291	87	114	25.0815
CCCCCACCCCUCUCCCCCCUGGGGGGC	chr19:6745983-6746230(+)$1	247	62	89	21.6647
CUUGGugcuuuccccaccccgccuugc	chr17:78397699-78397986(+)$1	287	60	87	23.0378
UUGGCUGUGUUCUUCUCUGAUAGUUUU	chr9:35092145-35092458(-)$1	313	243	270	23.5511

#DB
)))(((((...........)))))(((	chr19:1017263-1017602(-)$1	1	43	70	22.8527
.((.(((.............)))))))	chr7:44799722-44800023(+)$1	1	3	30	23.1141
((((.(((...........))).))))	chr3:48465418-48465674(-)$1	1	150	177	23.8311
..((((((...........))))))..	chr4:109543205-109543434(+)$1	1	108	135	23.7259
((((((((...........))))))))	chr20:3145226-3145577(-)$1	1	113	140	25.5526
..((((((...........))))))..	chr9:35092043-35092340(-)$1	1	125	152	23.5511
.(((((((...........))))))))	chr17:80016220-80016606(-)$1	1	124	151	24.9734
((..((((.............))))..	chr21:46876419-46876690(+)$1	1	162	189	21.4337
((((.(((.............))).))	chr1:155033657-155034045(+)$1	1	52	79	24.6225
((((((((...........))))))))	chr1:156213532-156213849(-)$1	1	24	51	25.0296
(((((((............)))))...	chr13:98017268-98017548(+)$1	1	5	32	19.1027
.(((((((.............))))))	chr12:27829900-27830217(+)$1	1	270	297	23.5602
.(((((((............)))))))	chr6:32157586-32157918(-)$1	1	83	110	24.6325
(.(((.((...........)).))).)	chr12:125270635-125270877(-)$1	1	139	166	24.2450
(.((((.(...........).))).).	chr9:138392596-138392918(+)$1	1	21	48	24.7485
.((((.((.............))..))	chr19:11339817-11340086(-)$1	1	220	247	22.6111
.(((((((.............))))))	chr9:90345912-90346229(+)$1	1	273	300	24.5765
.((((..............)))).)))	chr17:3559767-3560065(-)$1	1	21	48	20.8045
((((((((............)))))..	chr6:128327063-128327342(-)$1	1	140	167	23.1451
((((((((...........)))....)	chr8:145623242-145623511(-)$1	1	142	169	23.9492
.(((.(((..............))).)	chr1:988756-989036(+)$1	1	149	176	21.7849
((((((((...........))))))))	chr19:58991073-58991409(-)$1	1	217	244	25.5526
.(((((................)))))	chr9:131904718-131904968(+)$1	1	193	220	20.7654
(((.((..............)))))))	chr13:113761051-113761290(+)$1	1	86	113	20.9759
(..(((((...........))).))..	chr11:118984316-118984626(+)$1	1	249	276	23.3845
(((((.((.............))))))	chr10:81471607-81471880(-)$1	1	219	246	22.7340
((((((((...........))))))))	chr14:103570900-103571184(+)$1	1	30	57	25.5526
.(.(((((...........)).))).)	chr4:140651654-140651929(+)$1	1	161	188	24.5128
.(((.(((...........)))))).)	chr22:19958703-19958976(-)$1	1	197	224	25.0975
.(((((.............)))))..)	chr16:29822296-29822561(+)$1	1	181	208	22.6525
((((................)))))))	chr2:242755985-242756252(+)$1	1	191	218	21.3199
((((((((............).)))))	chr1:155034212-155034485(+)$1	1	17	44	24.7578
(((((((............)))).)))	chr11:65325234-65325513(-)$1	1	3	30	22.1747
...(((.............))).))))	chr4:52709643-52709970(+)$1	1	12	39	24.1965
(.(((((............))))))))	chr1:33820531-33820889(+)$1	1	145	172	23.1826
.(((((((...........))))))))	chr17:80016432-80016722(-)$1	1	240	267	24.9734
((..(((............)))..)))	chr11:68213010-68213305(+)$1	1	11	38	23.0763
.((.(((.............))).)).	chr11:47435356-47435629(+)$1	1	237	264	23.6050
.((((((............))))))..	chr19:17313654-17313946(+)$1	1	162	189	23.1704
.((((((............))).))))	chr20:34214429-34214713(-)$1	1	206	233	24.3912
(.(((.((...........)).))).)	chr12:125270596-125270823(-)$1	1	85	112	24.2450
((((.(((............))).)))	chr4:1804588-1804828(+)$1	1	134	161	23.5871
(.(((.((...........)).))).)	chr12:125270623-125270835(-)$1	1	97	124	24.2450
((((((((...........))))))))	chr17:7311431-7311690(+)$1	1	79	106	25.5526
(((.((((...........))))..))	chr5:65364524-65364839(+)$1	1	152	179	22.5483
(((.((..............)))))))	chr13:113761090-113761338(+)$1	1	47	74	20.9759
.))).(((.............)))...	chr14:105934556-105934788(+)$1	1	62	89	19.9636
((((((((............)))))))	chr3:183882744-183883023(+)$1	1	236	263	25.1406
.(((..((.............)).)))	chr6:131199239-131199503(-)$1	1	87	114	22.6528
..((((((...........)).))))(	chr15:22956004-22956257(+)$1	1	159	186	20.9808
((((((((...........))))))))	chr19:58990974-58991255(-)$1	1	63	90	25.5526
((((((((.............))))))	chr1:3417721-3418018(-)$1	1	167	194	24.4939
((((((((..............)))))	chr11:62156753-62157123(+)$1	1	159	186	21.0528
(.(((((............))))).).	chr20:35176475-35176758(-)$1	1	121	148	23.3165
((((.((............)).)))))	chr16:29818015-29818236(+)$1	1	77	104	22.2220
((((((((.............))))))	chr6:33248311-33248602(-)$1	1	87	114	25.0815
((((((.............))))))))	chr19:6745983-6746230(+)$1	1	62	89	21.6647
...((((............)))).)))	chr17:78397699-78397986(+)$1	1	60	87	23.0378
..((((((...........))))))..	chr9:35092145-35092458(-)$1	1	243	270	23.5511

#PSSM
! : 0.15	d : 0.13	= : 0.11	[ : 0.08	h : 0.06	: : 0.06	" : 0.05	c : 0.05	g : 0.05	a : 0.05	e : 0.05	f : 0.03	i : 0.01	F : 0.01	# : 0.01	$ : 0.01	] : 0.01	
g : 0.15	d : 0.11	= : 0.11	c : 0.11	[ : 0.10	e : 0.08	h : 0.06	" : 0.05	! : 0.05	b : 0.03	f : 0.03	i : 0.01	F : 0.01	a : 0.01	: : 0.01	
g : 0.15	c : 0.15	e : 0.13	d : 0.11	= : 0.11	f : 0.08	h : 0.06	! : 0.05	b : 0.03	" : 0.03	i : 0.01	a : 0.01	[ : 0.01	
c : 0.18	e : 0.16	g : 0.15	= : 0.11	d : 0.10	[ : 0.08	f : 0.08	h : 0.03	! : 0.03	i : 0.01	b : 0.01	
e : 0.16	c : 0.16	= : 0.11	g : 0.11	d : 0.11	[ : 0.10	f : 0.06	b : 0.05	i : 0.01	y : 0.01	: : 0.01	! : 0.01	h : 0.01	
c : 0.25	e : 0.13	= : 0.11	g : 0.11	d : 0.08	[ : 0.08	f : 0.06	b : 0.05	i : 0.01	w : 0.01	y : 0.01	! : 0.01	h : 0.01	
c : 0.20	b : 0.15	= : 0.11	g : 0.11	e : 0.10	f : 0.06	d : 0.06	w : 0.05	v : 0.05	y : 0.03	i : 0.01	[ : 0.01	
u : 0.15	c : 0.13	b : 0.13	= : 0.11	g : 0.10	v : 0.08	e : 0.05	f : 0.05	w : 0.05	d : 0.03	a : 0.03	y : 0.03	i : 0.01	
t : 0.38	v : 0.25	u : 0.23	w : 0.08	y : 0.03	
t : 0.38	v : 0.25	u : 0.23	w : 0.08	y : 0.03	
t : 0.38	v : 0.25	u : 0.23	w : 0.08	y : 0.03	
t : 0.38	v : 0.25	u : 0.23	w : 0.08	y : 0.03	
t : 0.38	v : 0.25	u : 0.23	w : 0.08	y : 0.03	
t : 0.38	v : 0.25	u : 0.23	w : 0.08	y : 0.03	
t : 0.38	v : 0.25	u : 0.23	w : 0.08	y : 0.03	
t : 0.38	v : 0.25	u : 0.23	w : 0.08	y : 0.03	
t : 0.38	v : 0.25	u : 0.23	w : 0.08	y : 0.03	
t : 0.38	v : 0.25	u : 0.23	w : 0.08	y : 0.03	
t : 0.38	v : 0.25	u : 0.23	w : 0.08	y : 0.03	
v : 0.20	c : 0.11	b : 0.10	e : 0.08	= : 0.08	u : 0.08	f : 0.06	d : 0.06	w : 0.06	g : 0.03	y : 0.03	i : 0.01	a : 0.01	h : 0.01	
c : 0.16	v : 0.16	b : 0.13	e : 0.10	= : 0.10	f : 0.06	g : 0.06	d : 0.06	w : 0.03	i : 0.01	] : 0.01	y : 0.01	a : 0.01	h : 0.01	
c : 0.22	= : 0.11	g : 0.11	] : 0.11	e : 0.10	d : 0.08	b : 0.08	f : 0.06	w : 0.03	i : 0.01	y : 0.01	h : 0.01	
c : 0.20	e : 0.13	g : 0.13	= : 0.11	d : 0.10	f : 0.08	] : 0.06	b : 0.05	h : 0.05	i : 0.01	4 : 0.01	2 : 0.01	
c : 0.16	e : 0.15	g : 0.15	= : 0.11	] : 0.10	f : 0.08	h : 0.06	2 : 0.05	b : 0.03	d : 0.03	i : 0.01	4 : 0.01	
c : 0.16	g : 0.15	= : 0.11	d : 0.10	h : 0.08	f : 0.08	e : 0.06	b : 0.05	] : 0.05	2 : 0.05	: : 0.03	i : 0.01	4 : 0.01	
g : 0.16	= : 0.11	] : 0.10	d : 0.10	h : 0.08	2 : 0.06	e : 0.06	c : 0.06	b : 0.03	3 : 0.03	: : 0.03	a : 0.03	4 : 0.03	5 : 0.01	i : 0.01	f : 0.01	
= : 0.15	d : 0.15	g : 0.13	e : 0.10	h : 0.08	2 : 0.06	c : 0.06	3 : 0.05	b : 0.03	i : 0.03	: : 0.03	5 : 0.01	4 : 0.01	a : 0.01	] : 0.01	f : 0.01	

#score	1377.7899479322257
#seq	59
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_UTR_m3_run2.txt

#BEAR
dd[==========####ffffff[	chr3:20081790-20082102(+)$1	312	131	155	9.1766
a[============[bb!!eeeee	chr16:29821450-29821669(+)$1	219	116	140	10.9651
c####dddd!!dddd[a[eeeee[	chr17:75212403-75212676(+)$1	273	97	121	9.0633
hhhhhcccbbdddd####eeeee[	chr2:10588299-10588552(-)$1	253	134	158	9.5411
iiiiiiiii[ccc!!bb[bb!!dd	chr14:94849182-94849437(-)$1	255	161	185	9.4595
cc[===========[bb[eeeeeg	chr1:206907395-206907641(+)$1	246	163	187	11.2792
iiiiiiiiidddd!!bbccc[bb[	chr19:1205989-1206266(+)$1	277	51	75	9.3375
=========[dddd[bb[eeeee[	chr1:234745079-234745357(-)$1	278	25	49	12.8473
iiiiiiiii!!dddd$$$$$ccc[	chr3:133467191-133467452(+)$1	261	173	197	8.8391
ggggg"""==========eeeee#	chr17:7154514-7154776(-)$1	262	33	57	9.8322
=======bb[dddd[bb[gggggg	chr7:5634090-5634325(+)$1	235	18	42	10.7918
dddd"""ccc!!eeeee[eeeee[	chr3:52567610-52567866(-)$1	256	36	60	7.8108
==========ccc!!ddddbbccc	chr1:231557523-231557809(-)$1	286	134	158	7.8320
ccbb"""==========[eeeee[	chr1:231557659-231557912(-)$1	253	99	123	9.7892
hhhhhcccbbdddd####eeeee[	chr2:10588220-10588472(-)$1	252	54	78	9.5411
====[ccc!!dddd[ggggggg##	chr9:139702318-139702567(+)$1	249	121	145	9.6579
5ccceeeee[dddd!!a[eeeee!	chr22:21982894-21983127(-)$1	233	146	170	9.0752
=========[ccc!!bb"""cccc	chr1:19400967-19401240(-)$1	273	106	130	10.2047
ee[a[a[cccdddd[bb!!eeeee	chr19:1206237-1206504(+)$1	267	93	117	10.2840
dd[bb!!ggggggg[bbeeeeeee	chr16:89043056-89043321(-)$1	265	80	104	8.7022
ggggggg[a[dddd[ffffff!!f	chr22:21983237-21983519(-)$1	282	29	53	8.8619
[a[bb============[eeeee[	chr19:1205896-1206156(+)$1	260	9	33	10.0068
ggggggg[a[dddd"""eeeeenn	chr19:54971701-54971950(+)$1	249	35	59	9.6672
$==========####ccceeeee[	chr11:70116720-70117070(+)$1	350	109	133	9.6518
========[eeeee[bb[ccclll	chr1:27022570-27022816(+)$1	246	124	148	8.3714
ccc[bb[bb[dddd[bb!!ddddn	chr7:5569450-5569716(-)$1	266	52	76	8.4492
333gggggggdddd[=========	chr19:17355915-17356262(-)$1	347	192	216	8.8408
=======[eeeee!!bbggggggg	chr11:65658089-65658331(+)$1	242	60	84	9.3221
cceeeee[a[dddd[a[eeeeenn	chr1:1284352-1284629(-)$1	277	95	119	8.2965
iiiiiii[a!!ffffff[eeeee[	chr3:33481515-33481766(-)$1	251	133	157	9.5952
========"""eeeee!!eeeee^	chr4:74270005-74270214(+)$1	209	27	51	9.8019
d"""ccc[cccccc[bbadddd[a	chr12:123756066-123756314(-)$1	248	176	200	7.7522
gggggg####dddd"""ggggggg	chr7:1036611-1036897(-)$1	286	204	228	9.7382
33cccdddd[dddd"""ffffff[	chr17:79801133-79801377(-)$1	244	32	56	8.0584
eeeee[ccc[dddd####eeeee[	chr17:40351542-40351835(-)$1	293	23	47	10.5103
dd[==========!!bb[eeeee$	chr1:990495-990741(+)$1	246	50	74	10.9545
ee####a[ffffff[bb[eeeee[	chr16:89006338-89006582(-)$1	244	129	153	8.9495
cccdddd"""dddd!!a[ccc!!e	chr19:1434713-1434941(+)$1	228	135	159	8.5523
eeeee[abb[dddd[eeeee[ccc	chr11:770339-770639(-)$1	300	114	138	7.7432
[hhhhhhhh[dddd[iiiiiiiii	chr12:132402733-132403010(+)$1	277	142	166	7.9576
hhhhh!!a[ccc[a[bb!!eeeee	chr3:133467153-133467386(+)$1	233	8	32	9.0139
b[ggggggg[dddd[dddd####a	chr2:216300520-216300801(-)$1	281	29	53	7.8288
c]ggggggg:dddd####ffffff	chr19:59056284-59056560(+)$1	276	100	124	7.9694
"""ffffff!!dddd"""eeeee[	chr12:125051859-125052113(-)$1	254	26	50	9.1874
ceeeee[bb[dddd[bb[cccddd	chr12:49666592-49666876(+)$1	284	150	174	8.5486
cc[cccggggggg!!bb"""eeee	chr19:2151268-2151556(-)$1	288	81	105	9.1693
==="""ccc!!ffffff[eeeeep	chr19:18530345-18530622(+)$1	277	209	233	7.8004
b[bb[a!!eeeee!!bbeeeeehh	chr9:19380090-19380332(-)$1	242	1	25	7.9526
f[ffffff!!dddd"""bb!!bb[	chr6:42981911-42982182(+)$1	271	40	64	7.4444

#otherMatches

#Seq PSSM
GGCGGCGGCGCCUGACACUCGGCG	chr3:20081790-20082102(+)$1	312	131	155	9.1766
GCGGGGGAGAGGGGAGAAUGGAGU	chr16:29821450-29821669(+)$1	219	116	140	10.9651
guucguagguaggguucguaggua	chr17:75212403-75212676(+)$1	273	97	121	9.0633
gccgccccUCUGCCAGCAGCUCCG	chr2:10588299-10588552(-)$1	253	134	158	9.5411
UCCUGGAGGGCCUGAAUUUCAACC	chr14:94849182-94849437(-)$1	255	161	185	9.4595
GCACUCGAUUGUUGUAAACUGUUG	chr1:206907395-206907641(+)$1	246	163	187	11.2792
ccccguggagcccccgccgccgcg	chr19:1205989-1206266(+)$1	277	51	75	9.3375
GGAGGAGGGCGCGCGUGGUGCCGG	chr1:234745079-234745357(-)$1	278	25	49	12.8473
CGAUGGUCCCAGUGUUGCUUGUGU	chr3:133467191-133467452(+)$1	261	173	197	8.8391
CCCUCUCUGCAGCCUCUCCUGCCA	chr17:7154514-7154776(-)$1	262	33	57	9.8322
UCGCCCCCUUUGUCCUGCUCCAUC	chr7:5634090-5634325(+)$1	235	18	42	10.7918
gcgcagucggagggcggcgggcgg	chr3:52567610-52567866(-)$1	256	36	60	7.8108
GCUCGgccgccgcagucgccgucg	chr1:231557523-231557809(-)$1	286	134	158	7.8320
CUCGGAAGCGGCCGGGCCGAGGGC	chr1:231557659-231557912(-)$1	253	99	123	9.7892
gccgccccUCUGCCAGCAGCUCCG	chr2:10588220-10588472(-)$1	252	54	78	9.5411
GCCGCGGGGGCCGGAGCGGAGCAG	chr9:139702318-139702567(+)$1	249	121	145	9.6579
UAGCGGGCCACACCCUGACAGCCG	chr22:21982894-21983127(-)$1	233	146	170	9.0752
AUGAGGUUGUCUGUAACCCAAGCC	chr1:19400967-19401240(-)$1	273	106	130	10.2047
CCGCUCGGUCGUCCGCGGCGGAGC	chr19:1206237-1206504(+)$1	267	93	117	10.2840
GUUGGCCCCUGAGGGUGGCCCUCC	chr16:89043056-89043321(-)$1	265	80	104	8.7022
CGCUCCGCCCGCAGGCGUGUGCCA	chr22:21983237-21983519(-)$1	282	29	53	8.8619
UGGGCCCCCCUCGCCGCUCCGCCU	chr19:1205896-1206156(+)$1	260	9	33	10.0068
GGGGGGCACAGGGGACUGGGGUCA	chr19:54971701-54971950(+)$1	249	35	59	9.6672
CUCCGCUCCGCCAGUGUCCGGCCG	chr11:70116720-70117070(+)$1	350	109	133	9.6518
ccuccgccgccgccAGCCCGGAGC	chr1:27022570-27022816(+)$1	246	124	148	8.3714
GCGGGCUCGGCCGGAAGGGGUGGG	chr7:5569450-5569716(-)$1	266	52	76	8.4492
AGAGCGCGGUGGGGGCGCCCCGGC	chr19:17355915-17356262(-)$1	347	192	216	8.8408
CUGCCGCGUGCGGAGCCGGAGCCC	chr11:65658089-65658331(+)$1	242	60	84	9.3221
gcggggcgcaggcgggcgggcggg	chr1:1284352-1284629(-)$1	277	95	119	8.2965
agcgcuagcggcgcgggggcuggg	chr3:33481515-33481766(-)$1	251	133	157	9.5952
GCCUUUGGCACAAUGAAGUGGGUA	chr4:74270005-74270214(+)$1	209	27	51	9.8019
CACAUGCCCGCCGCCGCCCUCAAC	chr12:123756066-123756314(-)$1	248	176	200	7.7522
UGCAGAAACCGCCUCUGUGGCUGC	chr7:1036611-1036897(-)$1	286	204	228	9.7382
AUCCUGUCAGGGUGUCCCCCAUGC	chr17:79801133-79801377(-)$1	244	32	56	8.0584
CCCAGGGCCUGCUGAGGACAGAGC	chr17:40351542-40351835(-)$1	293	23	47	10.5103
GGAGGGCUCGGCGUGGAUGGCAGC	chr1:990495-990741(+)$1	246	50	74	10.9545
CUUCUGUGCGUCCGGCCCGGGUGU	chr16:89006338-89006582(-)$1	244	129	153	8.9495
ggcAGCGGCUUUGGACGAGGGCAG	chr19:1434713-1434941(+)$1	228	135	159	8.5523
GGUUUGCCCUGCUGUGGCCUGUCU	chr11:770339-770639(-)$1	300	114	138	7.7432
GCUCUAGGGGCCUGCUGUGCUUCU	chr12:132402733-132403010(+)$1	277	142	166	7.9576
AGGGGAUGUGGCUGUCAAGGCCUU	chr3:133467153-133467386(+)$1	233	8	32	9.0139
CACAGGGGGAGGAGAGGGAACCCC	chr2:216300520-216300801(-)$1	281	29	53	7.8288
CUGUAGUGCCUGCUUAgggcccgc	chr19:59056284-59056560(+)$1	276	100	124	7.9694
gccggcgccccgcccgagcccugc	chr12:125051859-125052113(-)$1	254	26	50	9.1874
UGUGGUGCCUGGCGGAGACCUGGC	chr12:49666592-49666876(+)$1	284	150	174	8.5486
CCCGCCGCCGCCCUGGCCUGGGAG	chr19:2151268-2151556(-)$1	288	81	105	9.1693
CUCUUCCGUGGGCUccggcgcggg	chr19:18530345-18530622(+)$1	277	209	233	7.8004
UACCGCCCACCCAUGCUCACUUCC	chr9:19380090-19380332(-)$1	242	1	25	7.9526
CACAGCUGCCCGCCGGAAGAACCG	chr6:42981911-42982182(+)$1	271	40	64	7.4444

#DB
((.((((((((((....((((((.	chr3:20081790-20082102(+)$1	1	131	155	9.1766
(.((((((((((((.((..(((((	chr16:29821450-29821669(+)$1	1	116	140	10.9651
(....((((..((((.(.(((((.	chr17:75212403-75212676(+)$1	1	97	121	9.0633
((((((((((((((....(((((.	chr2:10588299-10588552(-)$1	1	134	158	9.5411
(((((((((.(((..((.((..((	chr14:94849182-94849437(-)$1	1	161	185	9.4595
((.(((((((((((.((.((((((	chr1:206907395-206907641(+)$1	1	163	187	11.2792
(((((((((((((..(((((.((.	chr19:1205989-1206266(+)$1	1	51	75	9.3375
(((((((((.((((.((.(((((.	chr1:234745079-234745357(-)$1	1	25	49	12.8473
(((((((((..((((.....(((.	chr3:133467191-133467452(+)$1	1	173	197	8.8391
(((((...(((((((((((((((.	chr17:7154514-7154776(-)$1	1	33	57	9.8322
(((((((((.((((.((.((((((	chr7:5634090-5634325(+)$1	1	18	42	10.7918
((((...(((..(((((.(((((.	chr3:52567610-52567866(-)$1	1	36	60	7.8108
))))))))))(((..(((((((((	chr1:231557523-231557809(-)$1	1	134	158	7.8320
((((...((((((((((.(((((.	chr1:231557659-231557912(-)$1	1	99	123	9.7892
((((((((((((((....(((((.	chr2:10588220-10588472(-)$1	1	54	78	9.5411
((((.(((..((((.(((((((..	chr9:139702318-139702567(+)$1	1	121	145	9.6579
.)))(((((.((((..(.(((((.	chr22:21982894-21983127(-)$1	1	146	170	9.0752
(((((((((.(((..((...((((	chr1:19400967-19401240(-)$1	1	106	130	10.2047
((.(.(.(((((((.((..(((((	chr19:1206237-1206504(+)$1	1	93	117	10.2840
((.((..(((((((.(((((((((	chr16:89043056-89043321(-)$1	1	80	104	8.7022
(((((((.(.((((.((((((..(	chr22:21983237-21983519(-)$1	1	29	53	8.8619
.(.((((((((((((((.(((((.	chr19:1205896-1206156(+)$1	1	9	33	10.0068
(((((((.(.((((...(((((..	chr19:54971701-54971950(+)$1	1	35	59	9.6672
.((((((((((....((((((((.	chr11:70116720-70117070(+)$1	1	109	133	9.6518
((((((((.(((((.((.(((...	chr1:27022570-27022816(+)$1	1	124	148	8.3714
(((.((.((.((((.((..((((.	chr7:5569450-5569716(-)$1	1	52	76	8.4492
...)))))))((((.(((((((((	chr19:17355915-17356262(-)$1	1	192	216	8.8408
(((((((.(((((..(((((((((	chr11:65658089-65658331(+)$1	1	60	84	9.3221
(((((((.(.((((.(.(((((..	chr1:1284352-1284629(-)$1	1	95	119	8.2965
(((((((.(..((((((.(((((.	chr3:33481515-33481766(-)$1	1	133	157	9.5952
((((((((...(((((..(((((.	chr4:74270005-74270214(+)$1	1	27	51	9.8019
(...(((.((((((.(((((((.(	chr12:123756066-123756314(-)$1	1	176	200	7.7522
((((((....((((...(((((((	chr7:1036611-1036897(-)$1	1	204	228	9.7382
..)))((((.((((...((((((.	chr17:79801133-79801377(-)$1	1	32	56	8.0584
(((((.(((.((((....(((((.	chr17:40351542-40351835(-)$1	1	23	47	10.5103
((.((((((((((..((.(((((.	chr1:990495-990741(+)$1	1	50	74	10.9545
((....(.((((((.((.(((((.	chr16:89006338-89006582(-)$1	1	129	153	8.9495
(((((((...((((..(.(((..(	chr19:1434713-1434941(+)$1	1	135	159	8.5523
(((((.(((.((((.(((((.(((	chr11:770339-770639(-)$1	1	114	138	7.7432
.((((((((.((((.(((((((((	chr12:132402733-132403010(+)$1	1	142	166	7.9576
(((((..(.(((.(.((..(((((	chr3:133467153-133467386(+)$1	1	8	32	9.0139
(.(((((((.((((.((((....(	chr2:216300520-216300801(-)$1	1	29	53	7.8288
).))))))).((((....((((((	chr19:59056284-59056560(+)$1	1	100	124	7.9694
...((((((..((((...(((((.	chr12:125051859-125052113(-)$1	1	26	50	9.1874
((((((.((.((((.((.((((((	chr12:49666592-49666876(+)$1	1	150	174	8.5486
((.((((((((((..((...((((	chr19:2151268-2151556(-)$1	1	81	105	9.1693
(((...(((..((((((.(((((.	chr19:18530345-18530622(+)$1	1	209	233	7.8004
(.((.(..(((((..(((((((((	chr9:19380090-19380332(-)$1	1	1	25	7.9526
(.((((((..((((...((..((.	chr6:42981911-42982182(+)$1	1	40	64	7.4444

#PSSM
c : 0.18	= : 0.18	d : 0.10	i : 0.08	g : 0.08	e : 0.08	h : 0.06	[ : 0.04	3 : 0.04	b : 0.04	a : 0.02	5 : 0.02	$ : 0.02	" : 0.02	f : 0.02	
= : 0.20	c : 0.14	e : 0.10	d : 0.08	[ : 0.08	h : 0.08	i : 0.08	g : 0.08	3 : 0.04	" : 0.04	# : 0.02	a : 0.02	] : 0.02	
= : 0.22	[ : 0.14	g : 0.12	h : 0.08	i : 0.08	c : 0.08	e : 0.08	# : 0.04	b : 0.04	" : 0.04	d : 0.02	3 : 0.02	f : 0.02	
= : 0.26	g : 0.14	h : 0.08	i : 0.08	b : 0.08	e : 0.08	c : 0.06	# : 0.04	d : 0.04	" : 0.04	f : 0.04	a : 0.02	[ : 0.02	
= : 0.24	g : 0.14	e : 0.10	h : 0.08	i : 0.08	" : 0.06	[ : 0.06	b : 0.06	c : 0.06	# : 0.04	f : 0.04	d : 0.02	
= : 0.26	g : 0.12	c : 0.10	i : 0.08	" : 0.08	d : 0.06	e : 0.06	a : 0.04	! : 0.04	[ : 0.04	f : 0.04	b : 0.02	# : 0.02	h : 0.02	
= : 0.26	c : 0.12	g : 0.12	i : 0.08	d : 0.06	" : 0.06	[ : 0.06	! : 0.06	e : 0.04	a : 0.04	f : 0.04	# : 0.02	h : 0.02	
= : 0.24	c : 0.14	[ : 0.14	g : 0.10	b : 0.08	i : 0.06	d : 0.04	" : 0.04	f : 0.04	e : 0.02	# : 0.02	h : 0.02	a : 0.02	! : 0.02	
= : 0.22	b : 0.12	c : 0.10	g : 0.10	a : 0.08	i : 0.06	e : 0.06	d : 0.04	! : 0.04	[ : 0.04	" : 0.04	f : 0.04	# : 0.02	h : 0.02	
[ : 0.30	= : 0.18	! : 0.14	c : 0.08	g : 0.06	e : 0.06	b : 0.04	" : 0.04	d : 0.02	# : 0.02	f : 0.02	: : 0.02	
d : 0.46	= : 0.16	! : 0.12	c : 0.10	e : 0.06	g : 0.04	" : 0.02	f : 0.02	
d : 0.53	= : 0.14	c : 0.10	e : 0.08	f : 0.06	g : 0.04	! : 0.02	# : 0.02	
d : 0.53	= : 0.14	e : 0.10	c : 0.08	f : 0.06	g : 0.04	# : 0.02	[ : 0.02	
d : 0.51	! : 0.16	= : 0.10	e : 0.06	f : 0.06	# : 0.04	g : 0.02	c : 0.02	a : 0.02	
[ : 0.38	! : 0.20	# : 0.12	" : 0.08	d : 0.06	= : 0.06	e : 0.04	f : 0.04	
b : 0.38	# : 0.10	" : 0.10	= : 0.08	e : 0.06	f : 0.06	d : 0.04	! : 0.04	[ : 0.02	$ : 0.02	g : 0.02	c : 0.02	a : 0.02	i : 0.02	
b : 0.38	# : 0.10	" : 0.10	= : 0.08	a : 0.06	f : 0.06	e : 0.04	d : 0.04	$ : 0.02	g : 0.02	c : 0.02	[ : 0.02	! : 0.02	i : 0.02	
[ : 0.32	! : 0.10	e : 0.10	# : 0.08	f : 0.06	g : 0.06	" : 0.06	c : 0.04	= : 0.04	d : 0.04	$ : 0.02	a : 0.02	i : 0.02	b : 0.02	
e : 0.46	f : 0.08	! : 0.08	c : 0.08	g : 0.08	d : 0.06	b : 0.04	" : 0.04	$ : 0.02	= : 0.02	i : 0.02	
e : 0.53	f : 0.08	c : 0.08	g : 0.08	b : 0.04	" : 0.04	d : 0.04	$ : 0.02	= : 0.02	i : 0.02	# : 0.02	! : 0.02	
e : 0.53	c : 0.10	f : 0.08	g : 0.08	! : 0.04	[ : 0.04	d : 0.04	b : 0.02	= : 0.02	i : 0.02	# : 0.02	
e : 0.53	c : 0.08	g : 0.08	f : 0.06	! : 0.06	d : 0.06	b : 0.04	l : 0.02	= : 0.02	i : 0.02	# : 0.02	
e : 0.46	c : 0.08	f : 0.06	d : 0.06	g : 0.06	b : 0.04	# : 0.04	! : 0.04	n : 0.04	l : 0.02	= : 0.02	[ : 0.02	i : 0.02	h : 0.02	
[ : 0.34	e : 0.12	g : 0.08	c : 0.06	n : 0.06	d : 0.04	# : 0.04	f : 0.04	a : 0.04	! : 0.02	l : 0.02	= : 0.02	^ : 0.02	$ : 0.02	i : 0.02	p : 0.02	h : 0.02	

#score	450.02802596412863
#seq	49
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_transcript_m1_run1.txt

#BEAR
=========uuuuuuuuuuuu=======	chr8:54900699-54900919(-)$1	220	50	78	25.6065
gggggggggxxxxxxxxxxxxxxxgggg	chr7:23561625-23561976(-)$1	351	198	226	19.2657
beeeee!!auuuuuuuuuuuua22eeee	chr7:100481999-100482269(+)$1	270	78	106	23.7657
eccc[dddduuuuuuuuuuuudddd]cc	chr7:99506161-99506488(-)$1	327	179	207	24.2182
dd:ffffffuuuuuuuuuuuuffffff:	chr9:131027842-131028071(-)$1	229	119	147	21.6329
c"""eeeeeuuuuuuuuuuuueeeee]c	chrX:118971678-118972024(-)$1	346	99	127	25.7171
eeeee"""bbtttttttttttbb333ee	chr14:73572803-73573030(+)$1	227	111	139	21.7122
cc!!eeeeeyyyyyyyyyyyyyyyyeee	chr15:40488738-40488990(+)$1	252	107	135	23.3322
:ccc[ddddtttttttttttdddd]ccc	chr17:77808956-77809226(-)$1	270	43	71	21.7777
==========ttttttttttt=======	chr12:42707575-42707879(-)$1	304	65	93	24.0426
###fffffftttttttttttffffff33	chr1:45219304-45219603(+)$1	299	17	45	23.2472
=========uuuuuuuuuuuu=======	chr2:203164967-203165191(+)$1	224	33	61	25.6065
$$$$ccc[auuuuuuuuuuuua]ccc66	chr2:136528082-136528406(+)$1	324	178	206	24.6277
[a[gggggggtttttttttttggggggg	chr5:138661081-138661410(+)$1	329	245	273	23.2467
ff[ffffffvvvvvvvvvvvvvffffff	chr1:205689651-205689882(-)$1	231	51	79	22.8315
####ddddvvvvvvvvvvvvvdddd444	chr7:102982110-102982398(-)$1	288	232	260	24.4571
ii!!eeeeexxxxxxxxxxxxxxxeeee	chr11:65267026-65267234(+)$1	208	17	45	19.9752
!ccc!!bbvvvvvvvvvvvvvbb]ccc]	chr5:134099575-134099844(+)$1	269	80	108	23.0339
ccc!!cccwwwwwwwwwwwwwwccc22c	chr3:37366062-37366295(+)$1	233	154	182	23.5543
dddd[a[bbvvvvvvvvvvvvvbb]add	chr10:43311959-43312216(+)$1	257	122	150	21.9914
[bb[eeeeeyyyyyyyyyyyyyyyyeee	chr1:150667051-150667419(-)$1	368	315	343	22.5498
cc!!bb[ccctttttttttttccc]bb]	chr6:52132614-52132846(-)$1	232	194	222	23.2389
eeeeeeeeevvvvvvvvvvvvveeeee:	chr12:104340506-104340750(+)$1	244	86	114	22.7181
ggggg[cccuuuuuuuuuuuuccc]ggg	chr7:127975840-127976086(-)$1	246	178	206	25.0899
b[eeeeewwwwwwwwwwwwwweeeee]b	chr6:90368392-90368711(-)$1	319	83	111	22.3876
iiiiiiiiiuuuuuuuuuuuuiiiiiii	chr1:70705021-70705277(+)$1	256	83	111	24.9067
cc"""ddddtttttttttttdddd4444	chr12:133362966-133363197(-)$1	231	34	62	23.7696
fffff[bb[attttttttttta]bb]ff	chr12:122999550-122999830(-)$1	280	44	72	22.0749
!ccc!!cccvvvvvvvvvvvvvccc22c	chr10:70547619-70547898(+)$1	279	135	163	24.2471
$$$$$ddddwwwwwwwwwwwwwwdddd5	chr1:214786983-214787269(+)$1	286	80	108	22.2017
ff####cccvvvvvvvvvvvvvcccfff	chr17:16359616-16359897(+)$1	281	250	278	23.9206
""ccceeeeettttttttttteeeee88	chr1:23395454-23395742(+)$1	288	157	185	23.3884
!!cccyyyyyyyyyyyyyyyyccc4444	chr16:89950931-89951166(+)$1	235	148	176	22.8311
hhhh[dddduuuuuuuuuuuuddddhhh	chr10:105762724-105763016(+)$1	292	204	232	22.7179
g!!ffffffuuuuuuuuuuuuffffff>	chr2:71650493-71650781(+)$1	288	10	38	24.2900
$$$$bb[ccctttttttttttcccbb88	chr16:89348634-89348913(-)$1	279	52	80	22.3208
dddd[eeeeettttttttttteeeee]d	chr1:24975356-24975609(+)$1	253	118	146	22.7237
$$$$ddddvvvvvvvvvvvvvdddd333	chr11:65267267-65267472(+)$1	205	135	163	23.9500
b[ffffffvvvvvvvvvvvvvffffff]	chr10:103557715-103558009(-)$1	294	139	167	22.6396
iiiii[cccuuuuuuuuuuuuccc]iii	chr11:65267589-65267816(+)$1	227	90	118	25.3122
dddd!!cccvvvvvvvvvvvvvccc555	chr12:123001812-123002071(-)$1	259	158	186	22.0079
eeeeedddduuuuuuuuuuuudddd]ee	chr3:154033782-154034053(-)$1	271	134	162	23.6220
f!!ffffffuuuuuuuuuuuuffffff4	chr17:38555191-38555448(-)$1	257	142	170	24.3712
##ccc[cccuuuuuuuuuuuucccccc4	chr6:15496823-15497081(+)$1	258	76	104	25.4765
bb!!eeeeewwwwwwwwwwwwwweeeee	chr11:65267433-65267638(+)$1	205	141	169	23.4874
=========wwwwwwwwwwwwww=====	chr1:185275520-185275852(-)$1	332	21	49	24.1633
c!!cccyyyyyyyyyyyyyyyyccc333	chr3:142772446-142772737(+)$1	291	106	134	23.7210
gggggggggyyyyyyyyyyyyyyyyggg	chr9:15474000-15474301(-)$1	301	50	78	22.7451
####eeeeeuuuuuuuuuuuueeeee44	chr1:16255116-16255349(+)$1	233	16	44	26.1579
====eeeeeuuuuuuuuuuuueeeee::	chr6:99849276-99849509(-)$1	233	145	173	23.5790
cc!!ddddvvvvvvvvvvvvvddddccc	chr12:95887775-95888052(+)$1	277	192	220	23.6178
%%%%eeeeettttttttttteeeee444	chr10:129906815-129907133(-)$1	318	14	42	22.1813
eee[bb[bbyyyyyyyyyyyyyyyybb2	chr15:93482783-93483049(+)$1	266	59	87	20.9689
bb!!eeeeewwwwwwwwwwwwwweeeee	chr11:65267495-65267708(+)$1	213	79	107	23.4874
####eeeeeuuuuuuuuuuuueeeee55	chr11:62298930-62299166(-)$1	236	72	100	24.8703
gggggggyyyyyyyyyyyyyyyyggggg	chr1:70700285-70700571(+)$1	286	118	146	22.8785
cc!!eeeeeuuuuuuuuuuuueeeee22	chr11:3026528-3026764(-)$1	236	166	194	25.4711
iiiii[cccuuuuuuuuuuuuccc]iii	chr11:65267624-65267828(+)$1	204	55	83	25.3122
ccc!!cccauuuuuuuuuuuua]ccc22	chr17:43138649-43138932(+)$1	283	138	166	25.2723

#otherMatches

#Seq PSSM
UUGAAAGGAUUGUUCUUGAUUUCUUUUU	chr8:54900699-54900919(-)$1	220	50	78	25.6065
AGAAUCUGGAAGAAUGAAUGGGUCCUAG	chr7:23561625-23561976(-)$1	351	198	226	19.2657
CCCAGCAAGAAAGAAGAAGGACGGGCUG	chr7:100481999-100482269(+)$1	270	78	106	23.7657
CUGAAUGAGAACACGUUAAAACUCAAUC	chr7:99506161-99506488(-)$1	327	179	207	24.2182
CCAGCCGCCUGCAGUAUUCCCGGCGGCG	chr9:131027842-131028071(-)$1	229	119	147	21.6329
UGAAGCGGCAAGAAGAAGAGCGCCGUAG	chrX:118971678-118972024(-)$1	346	99	127	25.7171
UUGGGAAAUCAGAGAACGAAAGAAAACC	chr14:73572803-73573030(+)$1	227	111	139	21.7122
CAAGCGUCUGAGGAGAAGAAAGAGAAGA	chr15:40488738-40488990(+)$1	252	107	135	23.3322
UGCCCGUCGUUCCAAUGUCCUGACCGGC	chr17:77808956-77809226(-)$1	270	43	71	21.7777
CUUUCCUUUUUAAUGGGAAACAAAAGGA	chr12:42707575-42707879(-)$1	304	65	93	24.0426
AAUAGCCAGAGAAGAGUAGGCUGGCUUA	chr1:45219304-45219603(+)$1	299	17	45	23.2472
CCUGUUCUAAAAAACGCAAAAUAGAACA	chr2:203164967-203165191(+)$1	224	33	61	25.6065
GAAGAUAGGGCAGCUCGAGAACGUAUAA	chr2:136528082-136528406(+)$1	324	178	206	24.6277
CCAUAUCAGCCCAAUGUUCCUGUUGGUG	chr5:138661081-138661410(+)$1	329	245	273	23.2467
CAAAUAUAAAAUUCUUUAAUCAUUAUAU	chr1:205689651-205689882(-)$1	231	51	79	22.8315
ACAUAGACAAUUUUCUUAUGAGUUUUCC	chr7:102982110-102982398(-)$1	288	232	260	24.4571
AACGCAUUUACUAaacgcagacgaaaau	chr11:65267026-65267234(+)$1	208	17	45	19.9752
CCUCAGACAAAAGAAGUAAACGUGGAGA	chr5:134099575-134099844(+)$1	269	80	108	23.0339
CCAAAUUUAAAAACCAAGAAAAAAAGAU	chr3:37366062-37366295(+)$1	233	154	182	23.5543
GGGGACGUGCACAAGGGAAAAUCAGGCC	chr10:43311959-43312216(+)$1	257	122	150	21.9914
CUCAAAGACUAUUAAAUAUUGGAAUGUU	chr1:150667051-150667419(-)$1	368	315	343	22.5498
GCAAGCAAAUGAGAUUAAAAAGUUAGUG	chr6:52132614-52132846(-)$1	232	194	222	23.2389
UCUUGCUGUGGUUUUGUUUGAAACAGCA	chr12:104340506-104340750(+)$1	244	86	114	22.7181
CAGAAGAGGUAAGCAGCUCAUCCUGUUC	chr7:127975840-127976086(-)$1	246	178	206	25.0899
CCUUUGGAGAUAAAAGAAAAACCAGAAG	chr6:90368392-90368711(-)$1	319	83	111	22.3876
UUUUCUUUUAAAUAUAGAUAAGAAAGAA	chr1:70705021-70705277(+)$1	256	83	111	24.9067
UGUCUCCCUCAUGACACCCCAGGGCCAU	chr12:133362966-133363197(-)$1	231	34	62	23.7696
GAUUUACUACAGAGAUAGAAAGAAGAGA	chr12:122999550-122999830(-)$1	280	44	72	22.0749
AGAUGAAGAGAACCAUGAAGAGUCUGAG	chr10:70547619-70547898(+)$1	279	135	163	24.2471
ACAAAUGUUGGAGUAAUAAAGAAGGCAG	chr1:214786983-214787269(+)$1	286	80	108	22.2017
CUGGAACCCUGAGAAGUAACCUGGGAGC	chr17:16359616-16359897(+)$1	281	250	278	23.9206
ACUCAGGAAGAAUUGAAAGAACUUCUUA	chr1:23395454-23395742(+)$1	288	157	185	23.3884
CUGGCUGUGCUCUGUCCCUCUGCCUGAC	chr16:89950931-89951166(+)$1	235	148	176	22.8311
UUAGGAAGUGAAGUUCAGGAUGCUUCUA	chr10:105762724-105763016(+)$1	292	204	232	22.7179
UUCCCACUGGGGAUGAGAAGACAGUGGA	chr2:71650493-71650781(+)$1	288	10	38	24.2900
AGAGCGAGCCAAGAAAGAGAAGGCCGAG	chr16:89348634-89348913(-)$1	279	52	80	22.3208
UUCUGCUUUCCUAGAACUGAAGAAAGAA	chr1:24975356-24975609(+)$1	253	118	146	22.7237
gaaguauagaagauagaaaaauauaaag	chr11:65267267-65267472(+)$1	205	135	163	23.9500
GUGUGGACUAGUGAUGGGAAUGUUCACU	chr10:103557715-103558009(-)$1	294	139	167	22.6396
CUUUUGGAAGAGUUAGAAGAAUUUGGAA	chr11:65267589-65267816(+)$1	227	90	118	25.3122
UCGAGAUCCAGAAGCAGAGAGAGGAAGA	chr12:123001812-123002071(-)$1	259	158	186	22.0079
GAACAAAUUGUACAGUUACUGAAUUCUG	chr3:154033782-154034053(-)$1	271	134	162	23.6220
GAAGCCCAGCAAAAGGUAAUCUUGGGUG	chr17:38555191-38555448(-)$1	257	142	170	24.3712
AACGGACACGUGAAGAAGGAAGUGCCGG	chr6:15496823-15497081(+)$1	258	76	104	25.4765
CCAAUUUAGAAGAAUACUUGAAGCUAGA	chr11:65267433-65267638(+)$1	205	141	169	23.4874
UUUUUGCUUUAAAUUUGACAAGUAGGUA	chr1:185275520-185275852(-)$1	332	21	49	24.1633
agacaagaaagauaaagaaaaAUUGGAA	chr3:142772446-142772737(+)$1	291	106	134	23.7210
AUGUUCUCUAAAAUAGCAUUACUGAAGA	chr9:15474000-15474301(-)$1	301	50	78	22.7451
GAGAGAGUGGAGAGAGAGAGACGCUUAA	chr1:16255116-16255349(+)$1	233	16	44	26.1579
AUCAGUUUUAGAACCAAAAAAAGAGCAU	chr6:99849276-99849509(-)$1	233	145	173	23.5790
CCUGGGAUGACAAUGAUAGAAAUCUGGU	chr12:95887775-95888052(+)$1	277	192	220	23.6178
AAAGAGUGAGAAAGGCAAAAUCACUAAA	chr10:129906815-129907133(-)$1	318	14	42	22.1813
AGACUCAGCGUGGAAAGAGAAAAAAGCA	chr15:93482783-93483049(+)$1	266	59	87	20.9689
CCAAUUUAGAAGAAUACUUGAAGCUAGA	chr11:65267495-65267708(+)$1	213	79	107	23.4874
CCAAGUUCAAGAUGCCAGAGAUGAAUAU	chr11:62298930-62299166(-)$1	236	72	100	24.8703
UGGGGGCUCCUACUCUUGAUCCUGCCCU	chr1:70700285-70700571(+)$1	286	118	146	22.8785
CGGGUGAGUAAAGUGAAAAUGACUUAAG	chr11:3026528-3026764(-)$1	236	166	194	25.4711
CUUUUGGAAGAGUUAGAAGAAUUUGGAA	chr11:65267624-65267828(+)$1	204	55	83	25.3122
AGCGAUUGCGAGAAUGAGGAGGACAACA	chr17:43138649-43138932(+)$1	283	138	166	25.2723

#DB
(((((((((............)))))))	chr8:54900699-54900919(-)$1	1	50	78	25.6065
))(((((((...............))))	chr7:23561625-23561976(-)$1	1	198	226	19.2657
((((((..(............)..))))	chr7:100481999-100482269(+)$1	1	78	106	23.7657
((((.((((............)))).))	chr7:99506161-99506488(-)$1	1	179	207	24.2182
)).((((((............)))))).	chr9:131027842-131028071(-)$1	1	119	147	21.6329
(...(((((............))))).)	chrX:118971678-118972024(-)$1	1	99	127	25.7171
(((((...((...........))...))	chr14:73572803-73573030(+)$1	1	111	139	21.7122
((..(((((................)))	chr15:40488738-40488990(+)$1	1	107	135	23.3322
.(((.((((...........)))).)))	chr17:77808956-77809226(-)$1	1	43	71	21.7777
((((((((((...........)))))))	chr12:42707575-42707879(-)$1	1	65	93	24.0426
...((((((...........))))))..	chr1:45219304-45219603(+)$1	1	17	45	23.2472
(((((((((............)))))))	chr2:203164967-203165191(+)$1	1	33	61	25.6065
....(((.(............).)))..	chr2:136528082-136528406(+)$1	1	178	206	24.6277
.(.(((((((...........)))))))	chr5:138661081-138661410(+)$1	1	245	273	23.2467
((.((((((.............))))))	chr1:205689651-205689882(-)$1	1	51	79	22.8315
....((((.............))))...	chr7:102982110-102982398(-)$1	1	232	260	24.4571
((..(((((...............))))	chr11:65267026-65267234(+)$1	1	17	45	19.9752
.(((..((.............)).))).	chr5:134099575-134099844(+)$1	1	80	108	23.0339
(((..(((..............)))..)	chr3:37366062-37366295(+)$1	1	154	182	23.5543
((((.(.((.............)).)))	chr10:43311959-43312216(+)$1	1	122	150	21.9914
.((.(((((................)))	chr1:150667051-150667419(-)$1	1	315	343	22.5498
((..((.(((...........))).)).	chr6:52132614-52132846(-)$1	1	194	222	23.2389
))))(((((.............))))).	chr12:104340506-104340750(+)$1	1	86	114	22.7181
(((((.(((............))).)))	chr7:127975840-127976086(-)$1	1	178	206	25.0899
(.(((((..............))))).)	chr6:90368392-90368711(-)$1	1	83	111	22.3876
(((((((((............)))))))	chr1:70705021-70705277(+)$1	1	83	111	24.9067
((...((((...........))))....	chr12:133362966-133363197(-)$1	1	34	62	23.7696
(((((.((.(...........).)).))	chr12:122999550-122999830(-)$1	1	44	72	22.0749
.(((..(((.............)))..)	chr10:70547619-70547898(+)$1	1	135	163	24.2471
.....((((..............)))).	chr1:214786983-214787269(+)$1	1	80	108	22.2017
((....(((.............))))))	chr17:16359616-16359897(+)$1	1	250	278	23.9206
..((((((((...........)))))..	chr1:23395454-23395742(+)$1	1	157	185	23.3884
..(((................)))....	chr16:89950931-89951166(+)$1	1	148	176	22.8311
((((.((((............)))))))	chr10:105762724-105763016(+)$1	1	204	232	22.7179
(..((((((............)))))).	chr2:71650493-71650781(+)$1	1	10	38	24.2900
....((.(((...........)))))..	chr16:89348634-89348913(-)$1	1	52	80	22.3208
((((.(((((...........))))).)	chr1:24975356-24975609(+)$1	1	118	146	22.7237
....((((.............))))...	chr11:65267267-65267472(+)$1	1	135	163	23.9500
(.((((((.............)))))).	chr10:103557715-103558009(-)$1	1	139	167	22.6396
(((((.(((............))).)))	chr11:65267589-65267816(+)$1	1	90	118	25.3122
((((..(((.............)))...	chr12:123001812-123002071(-)$1	1	158	186	22.0079
(((((((((............)))).))	chr3:154033782-154034053(-)$1	1	134	162	23.6220
(..((((((............)))))).	chr17:38555191-38555448(-)$1	1	142	170	24.3712
..(((.(((............)))))).	chr6:15496823-15497081(+)$1	1	76	104	25.4765
((..(((((..............)))))	chr11:65267433-65267638(+)$1	1	141	169	23.4874
(((((((((..............)))))	chr1:185275520-185275852(-)$1	1	21	49	24.1633
(..(((................)))...	chr3:142772446-142772737(+)$1	1	106	134	23.7210
))(((((((................)))	chr9:15474000-15474301(-)$1	1	50	78	22.7451
....(((((............)))))..	chr1:16255116-16255349(+)$1	1	16	44	26.1579
))))(((((............)))))..	chr6:99849276-99849509(-)$1	1	145	173	23.5790
((..((((.............)))))))	chr12:95887775-95888052(+)$1	1	192	220	23.6178
....(((((...........)))))...	chr10:129906815-129907133(-)$1	1	14	42	22.1813
(((.((.((................)).	chr15:93482783-93483049(+)$1	1	59	87	20.9689
((..(((((..............)))))	chr11:65267495-65267708(+)$1	1	79	107	23.4874
....(((((............)))))..	chr11:62298930-62299166(-)$1	1	72	100	24.8703
(((((((................)))))	chr1:70700285-70700571(+)$1	1	118	146	22.8785
((..(((((............)))))..	chr11:3026528-3026764(-)$1	1	166	194	25.4711
(((((.(((............))).)))	chr11:65267624-65267828(+)$1	1	55	83	25.3122
(((..((((............).)))..	chr17:43138649-43138932(+)$1	1	138	166	25.2723

#PSSM
c : 0.15	= : 0.08	g : 0.08	b : 0.08	e : 0.08	# : 0.08	d : 0.06	$ : 0.06	f : 0.06	i : 0.06	! : 0.05	[ : 0.03	: : 0.01	" : 0.01	h : 0.01	% : 0.01	
c : 0.18	= : 0.08	e : 0.08	# : 0.08	g : 0.06	d : 0.06	$ : 0.06	i : 0.06	! : 0.06	f : 0.05	b : 0.05	" : 0.03	[ : 0.03	a : 0.01	h : 0.01	% : 0.01	
! : 0.16	c : 0.15	e : 0.10	= : 0.08	# : 0.08	g : 0.06	$ : 0.06	d : 0.05	i : 0.05	" : 0.03	[ : 0.03	f : 0.03	: : 0.01	b : 0.01	h : 0.01	% : 0.01	
! : 0.15	c : 0.13	f : 0.11	= : 0.08	g : 0.08	e : 0.08	$ : 0.06	# : 0.06	d : 0.05	i : 0.05	" : 0.03	[ : 0.03	h : 0.01	% : 0.01	
e : 0.27	f : 0.11	g : 0.08	[ : 0.08	c : 0.08	! : 0.08	= : 0.06	d : 0.05	b : 0.05	i : 0.05	" : 0.01	$ : 0.01	# : 0.01	
e : 0.27	d : 0.15	f : 0.10	[ : 0.08	= : 0.06	g : 0.06	c : 0.06	! : 0.05	b : 0.05	" : 0.01	a : 0.01	i : 0.01	# : 0.01	y : 0.01	
e : 0.25	c : 0.16	d : 0.15	f : 0.10	= : 0.06	g : 0.06	[ : 0.06	b : 0.03	y : 0.03	! : 0.01	" : 0.01	i : 0.01	
e : 0.23	c : 0.18	d : 0.15	f : 0.10	= : 0.06	b : 0.06	g : 0.05	y : 0.05	! : 0.01	" : 0.01	[ : 0.01	w : 0.01	i : 0.01	
e : 0.23	c : 0.15	d : 0.10	f : 0.08	v : 0.08	= : 0.06	g : 0.05	a : 0.05	b : 0.05	y : 0.05	w : 0.03	i : 0.01	[ : 0.01	
u : 0.35	v : 0.18	y : 0.11	w : 0.10	t : 0.06	x : 0.03	c : 0.03	e : 0.03	b : 0.01	= : 0.01	g : 0.01	a : 0.01	
u : 0.35	t : 0.20	v : 0.18	y : 0.11	w : 0.10	x : 0.03	
u : 0.35	t : 0.20	v : 0.18	y : 0.11	w : 0.10	x : 0.03	
u : 0.35	t : 0.20	v : 0.18	y : 0.11	w : 0.10	x : 0.03	
u : 0.35	t : 0.20	v : 0.18	y : 0.11	w : 0.10	x : 0.03	
u : 0.35	t : 0.20	v : 0.18	y : 0.11	w : 0.10	x : 0.03	
u : 0.35	t : 0.20	v : 0.18	y : 0.11	w : 0.10	x : 0.03	
u : 0.35	t : 0.20	v : 0.18	y : 0.11	w : 0.10	x : 0.03	
u : 0.35	t : 0.20	v : 0.18	y : 0.11	w : 0.10	x : 0.03	
u : 0.35	t : 0.20	v : 0.18	y : 0.11	w : 0.10	x : 0.03	
u : 0.35	t : 0.20	v : 0.18	y : 0.11	w : 0.10	x : 0.03	
u : 0.35	v : 0.18	t : 0.13	y : 0.11	w : 0.10	x : 0.03	d : 0.03	f : 0.01	e : 0.01	
e : 0.15	d : 0.13	c : 0.11	y : 0.10	v : 0.10	f : 0.08	w : 0.08	a : 0.06	= : 0.05	x : 0.03	b : 0.03	g : 0.01	i : 0.01	
c : 0.20	e : 0.16	d : 0.13	f : 0.10	y : 0.08	w : 0.06	= : 0.05	b : 0.05	] : 0.05	x : 0.03	2 : 0.01	g : 0.01	i : 0.01	
c : 0.23	e : 0.20	d : 0.15	f : 0.10	= : 0.06	y : 0.06	x : 0.03	g : 0.03	b : 0.03	2 : 0.01	3 : 0.01	] : 0.01	i : 0.01	
e : 0.23	c : 0.15	d : 0.11	f : 0.10	] : 0.10	= : 0.06	y : 0.06	g : 0.05	4 : 0.03	b : 0.03	3 : 0.01	i : 0.01	
e : 0.25	f : 0.11	c : 0.10	g : 0.08	= : 0.06	4 : 0.06	] : 0.05	3 : 0.05	b : 0.05	i : 0.05	2 : 0.03	a : 0.01	d : 0.01	h : 0.01	5 : 0.01	
e : 0.15	f : 0.11	g : 0.08	c : 0.08	4 : 0.08	= : 0.06	2 : 0.06	] : 0.05	3 : 0.05	i : 0.05	d : 0.03	b : 0.03	8 : 0.03	5 : 0.03	6 : 0.01	h : 0.01	: : 0.01	
e : 0.13	4 : 0.11	c : 0.10	g : 0.08	= : 0.06	: : 0.05	3 : 0.05	f : 0.05	] : 0.05	i : 0.05	5 : 0.05	2 : 0.05	d : 0.03	8 : 0.03	6 : 0.01	b : 0.01	h : 0.01	> : 0.01	

#score	1384.3147494081834
#seq	59
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_UTR_m2_run2.txt

#BEAR
e!!cccooooooccceee	chr20:30959857-30960108(+)$1	251	76	94	11.6818
:eeeeeooooooeeeee:	chr16:28847724-28848000(+)$1	276	5	23	9.7894
ggggggoooooogggggg	chr12:132199010-132199282(+)$1	272	175	193	11.2114
[eeeeeooooooeeeee3	chr12:69663188-69663426(+)$1	238	125	143	11.8170
$$ddddoooooodddd22	chr1:155883853-155884101(-)$1	248	161	179	10.7278
d!!cccooooooccc22d	chr11:57558726-57558998(+)$1	272	74	92	11.3577
hh[cccooooooccc333	chr6:160209768-160210010(-)$1	242	74	92	11.6129
eee[bboooooobbeeee	chr20:57268672-57268938(+)$1	266	8	26	10.5557
eee[bboooooobb]eee	chr3:9516639-9516888(+)$1	249	205	223	10.4708
bb[cccoooooocccbb:	chr4:83275984-83276252(-)$1	268	205	223	9.6626
cc[cccoooooocccccc	chr4:83346677-83346885(-)$1	208	170	188	11.3959
gggggaooooooa]gggg	chr19:54971833-54972117(+)$1	284	38	56	11.0775
dd[cccooooooccc]dd	chr10:121339382-121339656(-)$1	274	46	64	11.1775
ffffffooooooffffff	chr11:10879326-10879588(-)$1	262	133	151	10.6713
ddd[bboooooobb333d	chr1:109855965-109856189(-)$1	224	37	55	10.1914
cc[cccooooooccc]cc	chrX:48434091-48434353(+)$1	262	53	71	11.5220
[eeeeeooooooeeeee]	chr9:95033802-95034066(-)$1	264	26	44	11.7013
g[ddddoooooodddd77	chr2:190648154-190648406(-)$1	252	165	183	10.1941
ffffffooooooffffff	chr17:7080804-7081063(-)$1	259	141	159	10.6713
eeeeeeooooooeeeee2	chr17:3727247-3727502(-)$1	255	166	184	11.4266
bb[cccooooooccc]bb	chr19:54972322-54972619(+)$1	297	172	190	10.5936
eeecccooooooccc]ee	chr2:238485809-238486130(-)$1	321	257	275	11.5359
ee!!bboooooobb22ee	chr16:31199527-31199815(+)$1	288	41	59	10.0180
:eeeeeooooooeeeee:	chr11:74976953-74977215(-)$1	262	57	75	9.7894
c!!cccoooooocccccc	chr11:3765719-3766002(-)$1	283	74	92	11.5638
ffffffooooooffffff	chr17:57915588-57915802(+)$1	214	190	208	10.6713
======oooooo======	chr17:30700310-30700570(+)$1	260	21	39	11.2617
""ddddoooooodddd22	chr2:198284837-198285065(-)$1	228	158	176	11.1621
$eeeeeooooooeeeeeg	chr17:25635492-25635768(+)$1	276	249	267	11.3788
ddd[bboooooobb]ddd	chr2:70454801-70455083(-)$1	282	152	170	9.8456
##ddddoooooodddd55	chr19:19104342-19104593(-)$1	251	15	33	9.7071
[eeeeeooooooeeeee3	chr12:67704703-67704984(+)$1	281	147	165	11.8170
cc[cccooooooccc]cc	chr19:54972976-54973201(+)$1	225	25	43	11.5220
ffffffooooooffffff	chr19:9529705-9529957(-)$1	252	99	117	10.6713
%ddddaooooooa]dddd	chr17:27074099-27074375(+)$1	276	85	103	9.9911
ieeeeeooooooeeeee:	chr13:52730230-52730491(-)$1	261	181	199	10.7134
ggggggoooooogggggg	chr14:35498385-35498654(+)$1	269	146	164	11.2114
d[ddddoooooodddd]d	chr7:30671753-30672004(+)$1	251	55	73	10.9380
ffff[aooooooa]ffff	chr9:96062221-96062475(+)$1	254	188	206	10.5581
"eeeeeooooooeeeee2	chr4:728367-728632(+)$1	265	186	204	11.6209
#eeeeeooooooeeeee3	chr5:95226590-95226859(-)$1	269	72	90	11.7643
ffffffooooooffffff	chr18:74071963-74072247(-)$1	284	183	201	10.6713
g[ddddoooooodddd]g	chr1:70697403-70697651(+)$1	248	209	227	11.1994
""ddddoooooodddd22	chr2:198284817-198285037(-)$1	220	130	148	11.1621
ggggggoooooogggggg	chr11:85374452-85374735(-)$1	283	211	229	11.2114
!!ddddoooooodddd]b	chr12:7252221-7252475(-)$1	254	191	209	11.0979
!!ddddoooooodddd22	chr11:72534492-72534762(+)$1	270	29	47	11.2963
d[ddddoooooodddddd	chr17:73236351-73236603(-)$1	252	150	168	10.7349
ffffffooooooffffff	chr14:24616307-24616538(-)$1	231	116	134	10.6713
d!!cccooooooccc22d	chr7:1608841-1609101(-)$1	260	84	102	11.3577
[bb[bboooooobb]bb]	chr6:31500587-31500813(-)$1	226	183	201	9.3090
:eeeeeooooooeeeee:	chr3:38167672-38167940(-)$1	268	53	71	9.7894
ffffffooooooffffff	chr1:97278472-97278745(+)$1	273	169	187	10.6713
gg[cccooooooccc22g	chr20:62572416-62572633(-)$1	217	20	38	11.5402
deeeeeooooooeeeee>	chr4:83276126-83276372(-)$1	246	9	27	11.3151
"""cccooooooccc333	chr2:234178535-234178781(+)$1	246	184	202	12.0366
ffffffooooooffffff	chr14:24616253-24616507(-)$1	254	85	103	10.6713
ggggggoooooogggggg	chr13:79888982-79889237(-)$1	255	190	208	11.2114

#otherMatches

#Seq PSSM
ACUGAAUUAUAUUUCUUC	chr20:30959857-30960108(+)$1	251	76	94	11.6818
AGUUGUGAUCCAGCAGCC	chr16:28847724-28848000(+)$1	276	5	23	9.7894
UGUACUGACAAAAGUACA	chr12:132199010-132199282(+)$1	272	175	193	11.2114
CAAGACAAAACAGUCUUC	chr12:69663188-69663426(+)$1	238	125	143	11.8170
AACAGAUGCCAUUCUGGA	chr1:155883853-155884101(-)$1	248	161	179	10.7278
UCUGUCUUCUCUGACCUG	chr11:57558726-57558998(+)$1	272	74	92	11.3577
ACAGCUUCUUACAGUAGA	chr6:160209768-160210010(-)$1	242	74	92	11.6129
AGUGCCCUUCCAGGACUG	chr20:57268672-57268938(+)$1	266	8	26	10.5557
GAUGAGAAAUUGCUGGUC	chr3:9516639-9516888(+)$1	249	205	223	10.4708
GUAUGGUCUCUUCCAACA	chr4:83275984-83276252(-)$1	268	205	223	9.6626
GUAUGGUCUCUUCCAACU	chr4:83346677-83346885(-)$1	208	170	188	11.3959
GCCUCCCCGCUCGUGGGG	chr19:54971833-54972117(+)$1	284	38	56	11.0775
GCUCACAAUACAGUGUGU	chr10:121339382-121339656(-)$1	274	46	64	11.1775
CCAGUCCACGACGACUGG	chr11:10879326-10879588(-)$1	262	133	151	10.6713
AGUCCUACUCCAAGAACA	chr1:109855965-109856189(-)$1	224	37	55	10.1914
CGUGGCCACCAAGCCCCG	chrX:48434091-48434353(+)$1	262	53	71	11.5220
GUAUAUGUUACAAUAUAG	chr9:95033802-95034066(-)$1	264	26	44	11.7013
AUGAGAAAUUCCUCUCUG	chr2:190648154-190648406(-)$1	252	165	183	10.1941
GGCUGCAGUGACGCAGUC	chr17:7080804-7081063(-)$1	259	141	159	10.6713
ccuuagucccccuuaagc	chr17:3727247-3727502(-)$1	255	166	184	11.4266
ACAGGCCGUCCAGCCCGU	chr19:54972322-54972619(+)$1	297	172	190	10.5936
UCUUCCACAGCAGGAGAG	chr2:238485809-238486130(-)$1	321	257	275	11.5359
UUUUUUCCUGUUGACUAA	chr16:31199527-31199815(+)$1	288	41	59	10.0180
CGGAUGCUUACUCGUCUU	chr11:74976953-74977215(-)$1	262	57	75	9.7894
AUUGAAAGGAUCUUCUGU	chr11:3765719-3766002(-)$1	283	74	92	11.5638
CUUCUCCCCUCUGGGAAG	chr17:57915588-57915802(+)$1	214	190	208	10.6713
auuuuuaaaaaaaaaaau	chr17:30700310-30700570(+)$1	260	21	39	11.2617
UUAAAGGUUUUACUUUUA	chr2:198284837-198285065(-)$1	228	158	176	11.1621
AUCUGGUAGUUUCUGGAA	chr17:25635492-25635768(+)$1	276	249	267	11.3788
GAUCUCAGCCCAGAAAUU	chr2:70454801-70455083(-)$1	282	152	170	9.8456
UUGAACAAAAUCGUUCUC	chr19:19104342-19104593(-)$1	251	15	33	9.7071
ACUCAGCAGUAAUUGAGC	chr12:67704703-67704984(+)$1	281	147	165	11.8170
CUGCCAUGUAACUGGAGG	chr19:54972976-54973201(+)$1	225	25	43	11.5220
UACUUGCAUCACCAGGUA	chr19:9529705-9529957(-)$1	252	99	117	10.6713
CUUUCCCCUAAUGAGAAA	chr17:27074099-27074375(+)$1	276	85	103	9.9911
UCCUGAGAAUGAUUGGGG	chr13:52730230-52730491(-)$1	261	181	199	10.7134
ucccuuUAAUAUAAGGGA	chr14:35498385-35498654(+)$1	269	146	164	11.2114
ACUGGGCUUAACUCCAUU	chr7:30671753-30672004(+)$1	251	55	73	10.9380
GGACCCGUAUCUGUGUCC	chr9:96062221-96062475(+)$1	254	188	206	10.5581
AGAACGGCAAGAUGUUUC	chr4:728367-728632(+)$1	265	186	204	11.6209
GAUGGGCUGACUUUCAUA	chr5:95226590-95226859(-)$1	269	72	90	11.7643
GCUUGCAGGAGAGCAGGC	chr18:74071963-74072247(-)$1	284	183	201	10.6713
ACUGUGCUUGCUUACGUU	chr1:70697403-70697651(+)$1	248	209	227	11.1994
UUAAAGGUUUUACUUUUA	chr2:198284817-198285037(-)$1	220	130	148	11.1621
UGUCUACUUUAAUGGGCA	chr11:85374452-85374735(-)$1	283	211	229	11.2114
CUGGUGAGUAGCCACCUG	chr12:7252221-7252475(-)$1	254	191	209	11.0979
CUUGAUUUGCCUGUCAUU	chr11:72534492-72534762(+)$1	270	29	47	11.2963
AGCUGGGAACAGCCAGUG	chr17:73236351-73236603(-)$1	252	150	168	10.7349
GUCCGGUACGCUCCGGGC	chr14:24616307-24616538(-)$1	231	116	134	10.6713
UCUUUUUAACCUAAAUUA	chr7:1608841-1609101(-)$1	260	84	102	11.3577
ACUACGUGAAACUGAAGG	chr6:31500587-31500813(-)$1	226	183	201	9.3090
UGGGAUCUCCUCAUCCCC	chr3:38167672-38167940(-)$1	268	53	71	9.7894
GAAAGCAUUUAAGUUUUU	chr1:97278472-97278745(+)$1	273	169	187	10.6713
GGCUCUGGGAAAAGACCC	chr20:62572416-62572633(-)$1	217	20	38	11.5402
CAGCACCCAGAAGUGCUU	chr4:83276126-83276372(-)$1	246	9	27	11.3151
AAAGAUAAAUGAAUCAAA	chr2:234178535-234178781(+)$1	246	184	202	12.0366
GUCCGGUACGCUCCGGGC	chr14:24616253-24616507(-)$1	254	85	103	10.6713
AUAAUAUCAUCCUAUUAU	chr13:79888982-79889237(-)$1	255	190	208	11.2114

#DB
(..(((......))))))	chr20:30959857-30960108(+)$1	1	76	94	11.6818
.(((((......))))).	chr16:28847724-28848000(+)$1	1	5	23	9.7894
((((((......))))))	chr12:132199010-132199282(+)$1	1	175	193	11.2114
.(((((......))))).	chr12:69663188-69663426(+)$1	1	125	143	11.8170
..((((......))))..	chr1:155883853-155884101(-)$1	1	161	179	10.7278
(..(((......)))..)	chr11:57558726-57558998(+)$1	1	74	92	11.3577
((.(((......)))...	chr6:160209768-160210010(-)$1	1	74	92	11.6129
(((.((......))))))	chr20:57268672-57268938(+)$1	1	8	26	10.5557
(((.((......)).)))	chr3:9516639-9516888(+)$1	1	205	223	10.4708
((.(((......))))).	chr4:83275984-83276252(-)$1	1	205	223	9.6626
((.(((......))))))	chr4:83346677-83346885(-)$1	1	170	188	11.3959
((((((......).))))	chr19:54971833-54972117(+)$1	1	38	56	11.0775
((.(((......))).))	chr10:121339382-121339656(-)$1	1	46	64	11.1775
((((((......))))))	chr11:10879326-10879588(-)$1	1	133	151	10.6713
(((.((......))...)	chr1:109855965-109856189(-)$1	1	37	55	10.1914
((.(((......))).))	chrX:48434091-48434353(+)$1	1	53	71	11.5220
.(((((......))))).	chr9:95033802-95034066(-)$1	1	26	44	11.7013
(.((((......))))..	chr2:190648154-190648406(-)$1	1	165	183	10.1941
((((((......))))))	chr17:7080804-7081063(-)$1	1	141	159	10.6713
((((((......))))).	chr17:3727247-3727502(-)$1	1	166	184	11.4266
((.(((......))).))	chr19:54972322-54972619(+)$1	1	172	190	10.5936
((((((......))).))	chr2:238485809-238486130(-)$1	1	257	275	11.5359
((..((......))..))	chr16:31199527-31199815(+)$1	1	41	59	10.0180
.(((((......))))).	chr11:74976953-74977215(-)$1	1	57	75	9.7894
(..(((......))))))	chr11:3765719-3766002(-)$1	1	74	92	11.5638
((((((......))))))	chr17:57915588-57915802(+)$1	1	190	208	10.6713
((((((......))))))	chr17:30700310-30700570(+)$1	1	21	39	11.2617
..((((......))))..	chr2:198284837-198285065(-)$1	1	158	176	11.1621
.(((((......))))))	chr17:25635492-25635768(+)$1	1	249	267	11.3788
(((.((......)).)))	chr2:70454801-70455083(-)$1	1	152	170	9.8456
..((((......))))..	chr19:19104342-19104593(-)$1	1	15	33	9.7071
.(((((......))))).	chr12:67704703-67704984(+)$1	1	147	165	11.8170
((.(((......))).))	chr19:54972976-54973201(+)$1	1	25	43	11.5220
((((((......))))))	chr19:9529705-9529957(-)$1	1	99	117	10.6713
.(((((......).))))	chr17:27074099-27074375(+)$1	1	85	103	9.9911
)(((((......))))).	chr13:52730230-52730491(-)$1	1	181	199	10.7134
((((((......))))))	chr14:35498385-35498654(+)$1	1	146	164	11.2114
(.((((......)))).)	chr7:30671753-30672004(+)$1	1	55	73	10.9380
((((.(......).))))	chr9:96062221-96062475(+)$1	1	188	206	10.5581
.(((((......))))).	chr4:728367-728632(+)$1	1	186	204	11.6209
.(((((......))))).	chr5:95226590-95226859(-)$1	1	72	90	11.7643
((((((......))))))	chr18:74071963-74072247(-)$1	1	183	201	10.6713
(.((((......)))).)	chr1:70697403-70697651(+)$1	1	209	227	11.1994
..((((......))))..	chr2:198284817-198285037(-)$1	1	130	148	11.1621
((((((......))))))	chr11:85374452-85374735(-)$1	1	211	229	11.2114
..((((......)))).)	chr12:7252221-7252475(-)$1	1	191	209	11.0979
..((((......))))..	chr11:72534492-72534762(+)$1	1	29	47	11.2963
(.((((......))))))	chr17:73236351-73236603(-)$1	1	150	168	10.7349
((((((......))))))	chr14:24616307-24616538(-)$1	1	116	134	10.6713
(..(((......)))..)	chr7:1608841-1609101(-)$1	1	84	102	11.3577
.((.((......)).)).	chr6:31500587-31500813(-)$1	1	183	201	9.3090
.(((((......))))).	chr3:38167672-38167940(-)$1	1	53	71	9.7894
((((((......))))))	chr1:97278472-97278745(+)$1	1	169	187	10.6713
((.(((......)))..)	chr20:62572416-62572633(-)$1	1	20	38	11.5402
((((((......))))).	chr4:83276126-83276372(-)$1	1	9	27	11.3151
...(((......)))...	chr2:234178535-234178781(+)$1	1	184	202	12.0366
((((((......))))))	chr14:24616253-24616507(-)$1	1	85	103	10.6713
((((((......))))))	chr13:79888982-79889237(-)$1	1	190	208	11.2114

#PSSM
f : 0.15	g : 0.13	d : 0.13	e : 0.10	[ : 0.06	c : 0.06	" : 0.06	: : 0.05	$ : 0.03	b : 0.03	# : 0.03	! : 0.03	h : 0.01	= : 0.01	% : 0.01	i : 0.01	
e : 0.27	f : 0.15	! : 0.10	g : 0.10	d : 0.06	[ : 0.06	b : 0.05	c : 0.05	" : 0.05	$ : 0.01	h : 0.01	= : 0.01	# : 0.01	
e : 0.25	d : 0.22	f : 0.15	[ : 0.13	! : 0.08	g : 0.08	= : 0.01	b : 0.01	" : 0.01	
c : 0.24	e : 0.20	d : 0.18	f : 0.15	g : 0.08	[ : 0.08	! : 0.01	= : 0.01	
c : 0.24	e : 0.20	d : 0.18	f : 0.13	b : 0.10	g : 0.08	= : 0.01	[ : 0.01	
c : 0.24	e : 0.20	d : 0.17	f : 0.13	b : 0.10	g : 0.06	a : 0.05	= : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
c : 0.24	e : 0.20	d : 0.17	f : 0.13	b : 0.10	g : 0.06	a : 0.05	= : 0.01	
c : 0.24	e : 0.20	d : 0.17	f : 0.13	b : 0.10	g : 0.06	] : 0.05	= : 0.01	
c : 0.24	e : 0.22	d : 0.18	f : 0.15	g : 0.08	] : 0.05	3 : 0.01	2 : 0.01	= : 0.01	
e : 0.25	d : 0.20	f : 0.15	g : 0.08	] : 0.08	2 : 0.06	3 : 0.05	b : 0.03	c : 0.03	= : 0.01	
e : 0.29	f : 0.15	2 : 0.12	g : 0.08	c : 0.06	d : 0.06	3 : 0.05	b : 0.05	] : 0.05	7 : 0.01	= : 0.01	5 : 0.01	
f : 0.15	g : 0.13	d : 0.13	2 : 0.10	e : 0.08	: : 0.08	3 : 0.08	c : 0.06	] : 0.03	b : 0.03	7 : 0.01	= : 0.01	5 : 0.01	> : 0.01	

#score	633.2009023790932
#seq	58
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_CDS_m3_run2.txt

#BEAR
[eeeee[bb!!cccmmmmcccbb]eeeeea	chr1:179198402-179198643(-)$1	241	124	154	10.5617
b[ccc!!bb[ddddmmmmdddd333bb444	chr16:88709810-88710133(-)$1	323	164	194	13.6433
####ffffffddddllldddd]ffffff33	chr7:65338233-65338489(+)$1	256	174	204	11.6687
ff[ccc####ddddmmmmddddccc22fff	chr7:148823200-148823467(-)$1	267	228	258	12.3414
[eeeee[bba[ddddllldddd]a]bb]ee	chr19:3976173-3976415(-)$1	242	112	142	11.6091
e[dddd"""ddddoooooodddd]dddd22	chr19:2270539-2270779(+)$1	240	6	36	10.0554
]ccccccddddcccmmmmccc]dddd]ccc	chr16:448097-448331(+)$1	234	104	134	9.0232
ee[ffffff!!cccmmmmccc22ffffff]	chr19:51226770-51227031(+)$1	261	49	79	11.0803
d[eeeee####cccooooooccc22eeeee	chr14:24901256-24901571(+)$1	315	84	114	10.2847
ccc[eeeee[ddddmmmmdddd]eeeee33	chr8:145107125-145107382(-)$1	257	92	122	14.1750
ffffff####ddddmmmmdddd]ffffff]	chr15:41099804-41100109(+)$1	305	272	302	13.0872
:dddd[ddddddddmmmmdddd]dddd22d	chr19:42398119-42398386(+)$1	267	158	188	10.1697
effffff[a[ddddmmmmdddda]ffffff	chr19:3201329-3201629(+)$1	300	201	231	13.2305
===[ccc[a[ddddmmmmdddd]accc===	chr7:100285109-100285394(-)$1	285	101	131	14.1857
b[eeeee[a[ddddnnnnndddd]a]eeee	chr14:24901146-24901456(+)$1	310	175	205	11.6833
fffff[dddd[cccmmmmccc333dddd]f	chr12:132401768-132402058(+)$1	290	148	178	10.3323
=!!ffffff[ddddllldddd]ffffff66	chr19:56813338-56813726(-)$1	388	116	146	11.4531
f[ggggggg[ddddllldddd22ggggggg	chr16:844968-845233(+)$1	265	156	186	12.7195
Jeeeee[cccddddmmmmdddd22ccc]ee	chr19:6740920-6741218(+)$1	298	15	45	11.8900
g[a[eeeee[ddddmmmmddddeeeee]a]	chr17:46131908-46132227(+)$1	319	28	58	13.9498
####ccc[a[ddddllldddda]cccccc]	chr7:104753046-104753347(-)$1	301	224	254	13.1392
f[eeeeebb!!ccclllccc22bb]eeeee	chr19:49964843-49965127(+)$1	284	71	101	9.4972
[ffffff"""ddddmmmmdddd333fffff	chr9:130571814-130572085(+)$1	271	111	141	14.1885
c"""ccc[a[eeeeemmmmeeeee]a]ccc	chr2:54197816-54198045(-)$1	229	94	124	9.0388
"bb[eeeee[ddddllldddd22eeeee]b	chr19:1017218-1017516(-)$1	298	173	203	12.5381
###eeeee####bboooooobb4444eeee	chr8:25315615-25315945(-)$1	330	211	241	9.2436
""a[eeeee[ddddlllddddeeeee]a55	chr2:242447771-242448065(-)$1	294	103	133	11.3122
ff"""dddd!!cccmmmmccc333dddd33	chr1:38273924-38274304(+)$1	380	164	194	11.6868
!bb[ccc[ddddoooooodddd22ccc]bb	chr1:36788408-36788687(+)$1	279	12	42	10.4058
e[a[cccbb[ddddnnnnndddd]bb4444	chr19:47778066-47778333(+)$1	267	81	111	10.9194
g!!ffffff!!ddddllldddd22ffffff	chr4:110745025-110745270(+)$1	245	8	38	12.9108
dd!!eeeee[ddddmmmmdddd22eeeee]	chr19:36516900-36517174(+)$1	274	195	225	14.4070
gffffffbb!!cccmmmmccc22bb]ffff	chr20:35236167-35236440(+)$1	273	196	226	10.2555
gggeeeee!!ddddmmmmdddd22eeeee:	chr16:2867255-2867547(+)$1	292	224	254	13.4763
eeeee[bba[ddddllldddd]a]bb]eee	chr19:3976135-3976373(-)$1	238	71	101	11.7207
c[ggggggg!!ddddllldddd4444gggg	chr1:205718984-205719212(-)$1	228	8	38	12.9919
cccbbdddd[ddddmmmmdddd]dddd]bb	chr5:176916996-176917264(-)$1	268	103	133	11.6138
bb[ffffff[ddddoooooodddd22ffff	chr19:10222215-10222517(+)$1	302	36	66	10.2784
eeee[bb"""ddddmmmmdddd333bb333	chr9:80645344-80645581(-)$1	237	71	101	13.4634
cc!!bb[ccc[cccmmmmcccccc]bb22c	chr6:32157582-32157845(-)$1	263	213	243	9.1061
eee[dddddddd[ammmma]dddd]dddd]	chr2:27255805-27256119(+)$1	314	128	158	9.8140
[bb[eeeee!!ddddllldddd22eeeee]	chr19:10488901-10489155(-)$1	254	21	51	13.2490
!!ggggggg[ddddllldddd22ggggggg	chr18:51750681-51750967(-)$1	286	230	260	12.8881
####dddda[ddddmmmmdddd22a]dddd	chr19:1104619-1104878(+)$1	259	203	233	13.7460
ggggggg"""ddddnnnnndddd22ggggg	chr22:50658452-50658769(-)$1	317	8	38	11.2181
dd!!dddd"""ddddllldddd4444dddd	chr20:60897713-60897960(-)$1	247	101	131	12.1512
F:bb!!ccc[ddddmmmmdddd]ccc22bb	chr8:30669809-30670093(-)$1	284	176	206	10.5174
!!eeeeeccc"""bblllbb333ccc]eee	chr12:7342421-7342704(+)$1	283	60	90	8.4757
d"""eeeee!!cccmmmmccc]eeeeeddd	chr7:154794516-154794799(-)$1	283	23	53	11.0271
dd:eeeeea[ddddmmmmdddd]a22eeee	chr9:140323189-140323444(+)$1	255	173	203	12.5945

#otherMatches

#Seq PSSM
UGGGCCGCGUCGGGGAAGCUCCGGGGCUCC	chr1:179198402-179198643(-)$1	241	124	154	10.5617
GUGGCGAGCAGUGGACGCCCAUCGAGCCCA	chr16:88709810-88710133(-)$1	323	164	194	13.6433
UGGCCCGGUAUGCAGUGUGCGCUGCCGGAA	chr7:65338233-65338489(+)$1	256	174	204	11.6687
UGUCGCAGCUGGAUUGGGGUCCGCGUCCAG	chr7:148823200-148823467(-)$1	267	228	258	12.3414
GGGAGGCGGGAUGGGACACCCAACACUUUU	chr19:3976173-3976415(-)$1	242	112	142	11.6091
GCAGCGCCCUGGGAAGACCCCCGCCGCUUC	chr19:2270539-2270779(+)$1	240	6	36	10.0554
UGGCAGCGUCCCCUCCAGAGGAGGACGGCU	chr16:448097-448331(+)$1	234	104	134	9.0232
CCCAGCUCUUGGGCUUUGGCCAUGGGGCUC	chr19:51226770-51227031(+)$1	261	49	79	11.0803
GUGGGUGGAGGGGCAAGGGAGUCAGCACCC	chr14:24901256-24901571(+)$1	315	84	114	10.2847
GGGAGGGCGAGGUGGGGACGCCCUGCCCCA	chr8:145107125-145107382(-)$1	257	92	122	14.1750
CCUCCCCGAGGGCUGCAGGGCcagggagga	chr15:41099804-41100109(+)$1	305	272	302	13.0872
AGUGCUGCCGUGGUCAACGCCAUUGGCCUG	chr19:42398119-42398386(+)$1	267	158	188	10.1697
UGGGCGCGGACUCCAACGGGAGCGGCGUCU	chr19:3201329-3201629(+)$1	300	201	231	13.2305
GUGGAGGUGGUUGGGUGCCUGGGUCCUCAC	chr7:100285109-100285394(-)$1	285	101	131	14.1857
GGCCCUCAGGCCACAGUCAGUGGGUGGAGG	chr14:24901146-24901456(+)$1	310	175	205	11.6833
GGAGUCAGGAUGCUCCUGAGCCCUUCCUUG	chr12:132401768-132402058(+)$1	290	148	178	10.3323
GAAGAGAGUGUUUUACAGAAGGGCUCUCCC	chr19:56813338-56813726(-)$1	388	116	146	11.4531
CCUGCAGGGCUUGUUUGACAACUUCCUGCG	chr16:844968-845233(+)$1	265	156	186	12.7195
CUGGGAGUCUGGUCGGCGGGCUGUGGGGUC	chr19:6740920-6741218(+)$1	298	15	45	11.8900
UGCAGCCUCAGCAGUGACCUGCGGGGUGGG	chr17:46131908-46132227(+)$1	319	28	58	13.9498
AAGGUGCGGUCCUGGAGCAGGUGGUGGUGG	chr7:104753046-104753347(-)$1	301	224	254	13.1392
CGCCCCUCCUCCUGGCCCAGCUGGCGGGGG	chr19:49964843-49965127(+)$1	284	71	101	9.4972
AGAGGGCCUGGAGGACUGCCUUGCUGCCCU	chr9:130571814-130572085(+)$1	271	111	141	14.1885
ggaggggguggggggggugUCCCUGGGCUC	chr2:54197816-54198045(-)$1	229	94	124	9.0388
GGCAUGCGAGUGGCUGAGCCAGGUUGCGGG	chr19:1017218-1017516(-)$1	298	173	203	12.5381
GCAGCCCCAAGAACGGAAAGGUAAcggggg	chr8:25315615-25315945(-)$1	330	211	241	9.2436
CGGGCUGGGAGGCCCGGGGUCCCCGGGCGA	chr2:242447771-242448065(-)$1	294	103	133	11.3122
CCGGGCUCAGACUGGUCACGGGGGUGAGAG	chr1:38273924-38274304(+)$1	380	164	194	11.6868
CCUGUAACCCCUACUCGAAGGGCAUUAGGG	chr1:36788408-36788687(+)$1	279	12	42	10.4058
UGCGGCGCGGAGCCGAGUGGGCUGCGGGGA	chr19:47778066-47778333(+)$1	267	81	111	10.9194
AGAGGUUAUACAGUUAAUAACUUAAUGAUU	chr4:110745025-110745270(+)$1	245	8	38	12.9108
CCAGGCACAGGCUGGAAGCAGCGAUGUGCA	chr19:36516900-36517174(+)$1	274	195	225	14.4070
ACUCCUGGGUCUGGUGCACCACUCCUCAGG	chr20:35236167-35236440(+)$1	273	196	226	10.2555
UUCCUGCCAGGGCCGUUGGGCCGAGGUGGA	chr16:2867255-2867547(+)$1	292	224	254	13.4763
GGAGGCGGGAUGGGACACCCAACACUUUUU	chr19:3976135-3976373(-)$1	238	71	101	11.7207
GGUCCCAUCGGCUGAAGUUCGGGGGGGGUG	chr1:205718984-205719212(-)$1	228	8	38	12.9919
GCCGUCCUCGUUUUCAGUGGGAGGGGGUAC	chr5:176916996-176917264(-)$1	268	103	133	11.6138
GUGGGUGGAAAGGCACGCUGGCCUGCUCUG	chr19:10222215-10222517(+)$1	302	36	66	10.2784
CAUUAUCAGUGCCCUAUGGGGUCAGGAGGG	chr9:80645344-80645581(-)$1	237	71	101	13.4634
GUGAGUGGGGAGCCUGGGGGCCCUGGCGAG	chr6:32157582-32157845(-)$1	263	213	243	9.1061
UCGGCGGCCUGGGGUcggcgccggcgccgg	chr2:27255805-27256119(+)$1	314	128	158	9.8140
ACUUGGGAGCUGACAGAUUGUCCCCUUUCC	chr19:10488901-10489155(-)$1	254	21	51	13.2490
AAGCAGGCGGGCCGGGGCGGCGGCGUCUGU	chr18:51750681-51750967(-)$1	286	230	260	12.8881
GAAGGCCCCAGCGUGCAGGCGCAGGAGGGC	chr19:1104619-1104878(+)$1	259	203	233	13.7460
GUGGGGGAGAACGUGUCAGACGUGGCUCCC	chr22:50658452-50658769(-)$1	317	8	38	11.2181
GGGGGUGAGAGGGCCCAGGGCUGCAGUCAC	chr20:60897713-60897960(-)$1	247	101	131	12.1512
CAAGGAGCUGGACCAGUGGGUCGAGCAGCU	chr8:30669809-30670093(-)$1	284	176	206	10.5174
ggaccgggccgagccgggggaagggCUCCG	chr12:7342421-7342704(+)$1	283	60	90	8.4757
gauucgcaggaccgggcccgggcugcgcgg	chr7:154794516-154794799(-)$1	283	23	53	11.0271
CCAGCUGGGGCUCUGGACAGAGGCGGCCAG	chr9:140323189-140323444(+)$1	255	173	203	12.5945

#DB
.(((((.((..(((....))))).))))))	chr1:179198402-179198643(-)$1	1	124	154	10.5617
(.(((..((.((((....))))...))...	chr16:88709810-88710133(-)$1	1	164	194	13.6433
....((((((((((...)))).))))))..	chr7:65338233-65338489(+)$1	1	174	204	11.6687
((.(((....((((....)))))))..)))	chr7:148823200-148823467(-)$1	1	228	258	12.3414
.(((((.(((.((((...)))).).)).))	chr19:3976173-3976415(-)$1	1	112	142	11.6091
(.((((...((((......)))).))))..	chr19:2270539-2270779(+)$1	1	6	36	10.0554
.)))((((((((((....))).)))).)))	chr16:448097-448331(+)$1	1	104	134	9.0232
((.((((((..(((....)))..)))))).	chr19:51226770-51227031(+)$1	1	49	79	11.0803
(.(((((....(((......)))..)))))	chr14:24901256-24901571(+)$1	1	84	114	10.2847
(((.(((((.((((....)))).)))))..	chr8:145107125-145107382(-)$1	1	92	122	14.1750
((((((....((((....)))).)))))).	chr15:41099804-41100109(+)$1	1	272	302	13.0872
.((((.((((((((....)))).))))..)	chr19:42398119-42398386(+)$1	1	158	188	10.1697
)((((((.(.((((....))))).))))))	chr19:3201329-3201629(+)$1	1	201	231	13.2305
(((.(((.(.((((....)))).)))))))	chr7:100285109-100285394(-)$1	1	101	131	14.1857
(.(((((.(.((((.....)))).).))))	chr14:24901146-24901456(+)$1	1	175	205	11.6833
(((((.((((.(((....)))...)))).)	chr12:132401768-132402058(+)$1	1	148	178	10.3323
(..((((((.((((...)))).))))))..	chr19:56813338-56813726(-)$1	1	116	146	11.4531
(.(((((((.((((...))))..)))))))	chr16:844968-845233(+)$1	1	156	186	12.7195
((((((.(((((((....))))..))).))	chr19:6740920-6741218(+)$1	1	15	45	11.8900
(.(.(((((.((((....))))))))).).	chr17:46131908-46132227(+)$1	1	28	58	13.9498
....(((.(.((((...))))).)))))).	chr7:104753046-104753347(-)$1	1	224	254	13.1392
(.(((((((..(((...)))..)).)))))	chr19:49964843-49965127(+)$1	1	71	101	9.4972
.((((((...((((....))))...)))))	chr9:130571814-130572085(+)$1	1	111	141	14.1885
(...(((.(.(((((....))))).).)))	chr2:54197816-54198045(-)$1	1	94	124	9.0388
.((.(((((.((((...))))..))))).)	chr19:1017218-1017516(-)$1	1	173	203	12.5381
...(((((....((......))....))))	chr8:25315615-25315945(-)$1	1	211	241	9.2436
..(.(((((.((((...))))))))).)..	chr2:242447771-242448065(-)$1	1	103	133	11.3122
((...((((..(((....)))...))))..	chr1:38273924-38274304(+)$1	1	164	194	11.6868
.((.(((.((((......))))..))).))	chr1:36788408-36788687(+)$1	1	12	42	10.4058
(.(.(((((.((((.....)))).))....	chr19:47778066-47778333(+)$1	1	81	111	10.9194
(..((((((..((((...))))..))))))	chr4:110745025-110745270(+)$1	1	8	38	12.9108
((..(((((.((((....))))..))))).	chr19:36516900-36517174(+)$1	1	195	225	14.4070
)((((((((..(((....)))..)).))))	chr20:35236167-35236440(+)$1	1	196	226	10.2555
)))(((((..((((....))))..))))).	chr16:2867255-2867547(+)$1	1	224	254	13.4763
(((((.(((.((((...)))).).)).)))	chr19:3976135-3976373(-)$1	1	71	101	11.7207
(.(((((((..((((...))))....))))	chr1:205718984-205719212(-)$1	1	8	38	12.9919
(((((((((.((((....)))).)))).))	chr5:176916996-176917264(-)$1	1	103	133	11.6138
((.((((((.((((......))))..))))	chr19:10222215-10222517(+)$1	1	36	66	10.2784
((((.((...((((....))))...))...	chr9:80645344-80645581(-)$1	1	71	101	13.4634
((..((.(((.(((....)))))).))..)	chr6:32157582-32157845(-)$1	1	213	243	9.1061
(((.((((((((.(....).)))).)))).	chr2:27255805-27256119(+)$1	1	128	158	9.8140
.((.(((((..((((...))))..))))).	chr19:10488901-10489155(-)$1	1	21	51	13.2490
..(((((((.((((...))))..)))))))	chr18:51750681-51750967(-)$1	1	230	260	12.8881
....(((((.((((....))))..).))))	chr19:1104619-1104878(+)$1	1	203	233	13.7460
(((((((...((((.....))))..)))))	chr22:50658452-50658769(-)$1	1	8	38	11.2181
((..((((...((((...))))....))))	chr20:60897713-60897960(-)$1	1	101	131	12.1512
(.((..(((.((((....)))).)))..))	chr8:30669809-30670093(-)$1	1	176	206	10.5174
..((((((((...((...))...))).)))	chr12:7342421-7342704(+)$1	1	60	90	8.4757
(...(((((..(((....))).))))))))	chr7:154794516-154794799(-)$1	1	23	53	11.0271
)).((((((.((((....)))).)..))))	chr9:140323189-140323444(+)$1	1	173	203	12.5945

#PSSM
e : 0.14	f : 0.12	d : 0.10	c : 0.10	g : 0.10	[ : 0.08	# : 0.08	b : 0.06	! : 0.06	= : 0.04	" : 0.04	] : 0.02	: : 0.02	J : 0.02	F : 0.02	
[ : 0.18	e : 0.14	f : 0.14	# : 0.08	c : 0.08	d : 0.08	! : 0.08	b : 0.08	" : 0.06	g : 0.04	= : 0.02	: : 0.02	
e : 0.19	f : 0.10	! : 0.10	g : 0.10	c : 0.08	# : 0.08	b : 0.08	[ : 0.06	a : 0.06	" : 0.06	d : 0.04	= : 0.02	: : 0.02	
e : 0.23	f : 0.18	[ : 0.18	g : 0.08	c : 0.06	# : 0.06	" : 0.06	! : 0.06	d : 0.04	b : 0.04	
e : 0.36	f : 0.19	c : 0.16	d : 0.10	g : 0.08	b : 0.04	" : 0.02	[ : 0.02	! : 0.02	
e : 0.34	f : 0.18	c : 0.14	d : 0.12	g : 0.08	[ : 0.06	! : 0.04	b : 0.04	
e : 0.27	f : 0.16	c : 0.14	d : 0.14	[ : 0.08	g : 0.08	# : 0.04	b : 0.04	! : 0.02	" : 0.02	
e : 0.19	d : 0.16	b : 0.14	[ : 0.12	f : 0.10	" : 0.08	c : 0.08	# : 0.06	g : 0.06	
a : 0.16	d : 0.14	e : 0.14	b : 0.12	f : 0.10	" : 0.10	# : 0.08	c : 0.08	g : 0.06	! : 0.02	
[ : 0.42	! : 0.19	d : 0.12	# : 0.08	" : 0.08	c : 0.06	f : 0.02	a : 0.02	
d : 0.66	! : 0.18	[ : 0.06	# : 0.04	" : 0.04	e : 0.02	
d : 0.74	c : 0.19	e : 0.02	# : 0.02	" : 0.02	
d : 0.70	c : 0.19	e : 0.02	b : 0.02	o : 0.02	[ : 0.02	" : 0.02	
d : 0.68	c : 0.19	o : 0.04	b : 0.04	e : 0.02	a : 0.02	
m : 0.52	l : 0.18	d : 0.10	o : 0.10	n : 0.06	e : 0.02	b : 0.02	
m : 0.54	l : 0.30	o : 0.10	n : 0.06	
m : 0.54	l : 0.30	o : 0.10	n : 0.06	
m : 0.54	d : 0.16	l : 0.12	o : 0.10	n : 0.06	c : 0.02	
d : 0.62	c : 0.18	o : 0.08	n : 0.06	m : 0.02	a : 0.02	b : 0.02	
d : 0.70	c : 0.18	o : 0.06	e : 0.02	] : 0.02	b : 0.02	
d : 0.74	c : 0.18	2 : 0.02	e : 0.02	b : 0.02	3 : 0.02	
d : 0.58	2 : 0.12	] : 0.10	3 : 0.06	b : 0.04	c : 0.04	e : 0.04	a : 0.02	
2 : 0.23	] : 0.18	d : 0.14	3 : 0.12	e : 0.08	c : 0.06	4 : 0.06	b : 0.04	f : 0.04	a : 0.04	
2 : 0.18	] : 0.12	e : 0.12	3 : 0.10	c : 0.10	d : 0.10	f : 0.08	a : 0.06	4 : 0.06	g : 0.04	b : 0.04	
e : 0.18	c : 0.14	f : 0.12	d : 0.12	] : 0.10	2 : 0.08	3 : 0.06	4 : 0.06	b : 0.06	a : 0.04	g : 0.04	
e : 0.21	f : 0.14	d : 0.14	b : 0.12	c : 0.12	2 : 0.06	] : 0.06	g : 0.06	4 : 0.06	a : 0.02	
e : 0.25	f : 0.18	d : 0.16	] : 0.10	b : 0.08	c : 0.08	g : 0.08	2 : 0.04	4 : 0.02	
e : 0.25	f : 0.19	d : 0.14	] : 0.10	g : 0.08	c : 0.06	2 : 0.06	4 : 0.04	= : 0.02	a : 0.02	3 : 0.02	
e : 0.25	f : 0.16	3 : 0.08	g : 0.08	d : 0.08	2 : 0.06	c : 0.06	b : 0.06	4 : 0.04	] : 0.04	= : 0.02	6 : 0.02	a : 0.02	5 : 0.02	
e : 0.18	f : 0.14	] : 0.14	3 : 0.08	d : 0.08	g : 0.08	b : 0.08	c : 0.06	4 : 0.04	a : 0.02	2 : 0.02	= : 0.02	6 : 0.02	5 : 0.02	: : 0.02	

#score	585.0206897733739
#seq	50
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_UTR_m2_run1.txt

#BEAR
========"""cccrrrrrrrrrccc333=========	chr8:22277789-22278052(+)$1	263	73	111	15.3468
"""gggggggeeeee"""ammmma333eeeee4444gg	chr1:27662109-27662398(+)$1	289	81	119	12.7721
========"""gggggggnnnnnggggggg]=======	chr2:202082551-202082858(+)$1	307	248	286	16.5589
ggg[bb"""ffffff[cccmmmmccc333ffffff333	chr16:2648483-2648772(+)$1	289	203	241	13.0025
[ggggggg!!bbgggggggooooooggggggg333bb5	chr16:69497139-69497422(+)$1	283	197	235	13.4142
ggggggggggggg!!ddddlllddddggggggg333gg	chr17:79801039-79801272(-)$1	233	138	176	14.1519
eeeddddccc[gggggggooooooggggggg333ccc]	chr22:47569232-47569522(+)$1	290	59	97	14.8626
""===========!!a!!aooooooa22a22=======	chr16:4307684-4308012(-)$1	328	142	180	17.1164
fffff[ccceeeee!!bboooooobb22eeeee]ccc]	chr17:38512428-38512757(+)$1	329	269	307	13.0000
ddddd"""ccc"""ddddnnnnndddd333cccdddd3	chr22:41697614-41697875(+)$1	261	191	229	12.7487
$$$$ccc[==========rrrrrrrrr==========c	chr4:1809558-1809834(+)$1	276	43	81	13.6930
gg####ggggggg"""bbmmmmbb]ggggggg4444gg	chr1:228675058-228675295(+)$1	237	136	174	12.7656
iiiiiiiii[dddd[ccclllccc]dddd]iiiiiiii	chr9:136229566-136229799(-)$1	233	150	188	13.2083
eeeee"""ccc!!ddddoooooodddd]ccc22eeeee	chr22:35743091-35743356(+)$1	265	154	192	13.4057
eeee!!ccc"""ddddoooooodddd22ccc22eeeee	chr7:75957951-75958214(-)$1	263	42	80	12.5239
=======####cccrrrrrrrrrccc333=========	chr7:92242665-92242939(-)$1	274	185	223	15.1214
d"""ggggggg!!eeeeellleeeee22ggggggg]dd	chr16:2036211-2036548(+)$1	337	77	115	12.8028
oooddddccc[gggggggooooooggggggg333ccc:	chr9:111780154-111780421(-)$1	267	132	170	13.1006
$$$$===============lll===============4	chr9:136229047-136229277(-)$1	230	174	212	16.8201
!!a[===========cccnnnnnccc22==========	chr17:73941013-73941246(-)$1	233	34	72	18.2080
[dddd!!dddd!!ddddoooooodddd333dddd]ddd	chr2:85548563-85548855(-)$1	292	57	95	12.4002
eee[ccc[ccc"""cccooooooccc333ccc]ccc]e	chr20:39803787-39804064(+)$1	277	172	210	16.5405
cc]dddd:==========oooooo==========:hhh	chr7:98993823-98994099(-)$1	276	139	177	13.4959
ccc[a[==========[ccclllccc22==========	chr7:29962792-29963107(-)$1	315	28	66	17.1169
c[ggggggg$$$$$cccooooooccc22ggggggg]cc	chr3:50367692-50368022(-)$1	330	84	122	15.7767
=======!!ffffff[bboooooobb]ffffff]====	chr7:44252605-44252834(+)$1	229	51	89	14.3836
iiiiiii[cccgggggggnnnnnggggggg]ccc333i	chr19:33685380-33685758(+)$1	378	72	110	15.2125
[eeeee[===========oooooo===========22e	chr19:2101680-2102008(-)$1	328	120	158	17.4133
ffffff[ccc$$$$$cccnnnnnccccccffffff22e	chr7:1036742-1037009(-)$1	267	178	216	12.0375
ddd[bb[============lll============]bb]	chr17:26941712-26942037(-)$1	325	280	318	15.4944
bb[ffffffiiiiiiiiinnnnniiiiiiiii22ffff	chr9:137024029-137024338(+)$1	309	112	150	12.9524
iiiiiiii[eeeee[cccmmmmccceeeee]iiiiiii	chr20:61599507-61599774(+)$1	267	205	243	13.2763
b"""ccc!!eeeeea!!ccclllccc22a]eeeee22c	chr15:89174325-89174605(+)$1	280	227	265	13.0333
!ggggggg[a$$$$$cccnnnnnccc4444aggggggg	chr4:1815134-1815421(-)$1	287	191	229	14.7158
eee[a[a!!eeeee[cccnnnnnccceeeee22a]a]e	chr16:1749119-1749427(+)$1	308	108	146	13.6425
f[ffffff[a[bb[cccooooooccc]bbaffffff]f	chr1:15546249-15546579(+)$1	330	140	178	12.7117
==========[a!!ddddnnnnndddd22a]=======	chr7:72855377-72855659(-)$1	282	147	185	15.9006
!bb[a!!ccc"""a!!cccmmmmccc22a333ccc444	chr22:29724348-29724616(-)$1	268	40	78	14.4637
=============[ddddoooooodddd==========	chr19:4445047-4445334(-)$1	287	14	52	17.0120
ccceeeee!!==========lll==========22eee	chr1:230838667-230838879(-)$1	212	25	63	14.9562
eedddd[eeeee!!cccooooooccceeeee]dddd22	chr3:48509925-48510203(-)$1	278	227	265	12.7156
c[a!!eeeeeagggggggmmmmggggggg]a333eeee	chr14:99980035-99980284(-)$1	249	173	211	12.2125
ccciiiiiiiii####bboooooobbiiiiiiiii000	chr6:33161508-33161776(-)$1	268	43	81	14.3440
[eeeee####eeeee[bbnnnnnbb]eeeee333eeee	chr6:7883197-7883431(-)$1	234	9	47	12.1430
ccc[ggggggg!!ggggggglllggggggggggggggc	chr12:49161416-49161720(-)$1	304	180	218	14.0884
!eeeeebb[ggggggg[ccclllccc333ggggggg22	chrX:119571869-119572136(-)$1	267	184	222	14.3043
ccc[ccc[a[a!!cccbbnnnnnbb]ccc22a]a]ccc	chr14:75202714-75202969(+)$1	255	189	227	12.9090
ffffff[a[ccc[eeeeeooooooeeeeeccca]ffff	chr20:25207060-25207372(+)$1	312	175	213	12.4368
eee[dddd[ccc!!cccooooooccc22cccdddd]ee	chr16:3022132-3022448(+)$1	316	17	55	14.4841
[ccc[ccc[dddd[cccooooooccc]dddd]ccc333	chr17:6588822-6589101(-)$1	279	151	189	14.3900
####ccc[ccc[bb[bboooooobbbbcccccc333gg	chr1:160967684-160967937(-)$1	253	102	140	13.4581
!eeeeea!!ggggggg[ccclllccc333ggggggg22	chr17:7484986-7485269(+)$1	283	30	68	15.0589
dddd!!============mmmm============333d	chr11:118915153-118915397(-)$1	244	121	159	15.5936
d[a[a[a!!ccc!!ddddmmmmdddd333ccc22a]a]	chr19:39888805-39889171(+)$1	366	154	192	13.6301
==========!!ggggggglllggggggg]========	chr8:144989893-144990151(-)$1	258	185	223	16.1567

#otherMatches

#Seq PSSM
GAUGCUGGAUAUUGAUUUUGUAACAGCACCUGGUGUUU	chr8:22277789-22278052(+)$1	263	73	111	15.3468
CCUGGAAGCCCCUUUGUUCUUCUGUUGAAAGGCUUUGG	chr1:27662109-27662398(+)$1	289	81	119	12.7721
auuuuuuuuauucuuuauuuuuuguagagauggaggga	chr2:202082551-202082858(+)$1	307	248	286	16.5589
GGAGCAGAGAGGCCUGAGGGCCUCCUAAAAGGUUUAAA	chr16:2648483-2648772(+)$1	289	203	241	13.0025
UUUAGAGAAGGCACCAAAGCUUUCACUUUGGUUUGGCA	chr16:69497139-69497422(+)$1	283	197	235	13.4142
GAUGCUGGAGCUGAAUCAGACGCUGACAGUUCUUCAGG	chr17:79801039-79801272(-)$1	233	138	176	14.1519
CCUCACUGUCCCGGGUGGCGCGCCCCACCUGCCUGGCU	chr22:47569232-47569522(+)$1	290	59	97	14.8626
GGCUGGGGUGUCGCAGAGCGUGUGGGAGCAUCGGCACC	chr16:4307684-4308012(-)$1	328	142	180	17.1164
AGGCCGAGGCCAGGAACUGAGUGAGGCCCCUGGUCCUG	chr17:38512428-38512757(+)$1	329	269	307	13.0000
GGGGCAGAGGCCGGGGACACUGCGUCCGGAGCCGCCCG	chr22:41697614-41697875(+)$1	261	191	229	12.7487
AUAGAUGCUGUGUAUAUGGuauauauacauauauauau	chr4:1809558-1809834(+)$1	276	43	81	13.6930
GCUCCCUGCGGGCCCCGCCGAGGCCGCCUGCGCCCUGU	chr1:228675058-228675295(+)$1	237	136	174	12.7656
GCUGCUGGUCUGGGUGCUGCUGGCCUCCAAGCUGGCAG	chr9:136229566-136229799(-)$1	233	150	188	13.2083
ACACCCUUAGGCUGGGACCUCCCUCCCUCCUCUGGUGU	chr22:35743091-35743356(+)$1	265	154	192	13.4057
GCUAAAUGAGAAUGAAAGCGACUUCAGGUCAGGUGGCU	chr7:75957951-75958214(-)$1	263	42	80	12.5239
AAAGUAUCUUUUGGAAAGUUUAGCCACCUGUGCUUUCU	chr7:92242665-92242939(-)$1	274	185	223	15.1214
GCCUGGGCUGCCCCUUGACAUUCAGGAUGUAGCUUCCU	chr16:2036211-2036548(+)$1	337	77	115	12.8028
UACCAGGAGCAGAGGUGCCCCAGAGUGCUUCACAGCUA	chr9:111780154-111780421(-)$1	267	132	170	13.1006
CCUAUCUGGGGACAGGCUGGCUCAGCCUGUCUCCAGGG	chr9:136229047-136229277(-)$1	230	174	212	16.8201
AUGUCUUUGCAGGUUUGAGGAGAUCAUCGACCUGCAGA	chr17:73941013-73941246(-)$1	233	34	72	18.2080
UAAUGGUCCUUUAAUCUGAUAUAAGAUGCCAAGGGUAU	chr2:85548563-85548855(-)$1	292	57	95	12.4002
GAAGAAAUAGCAGAGCCUAUUUUGGUGAGGUUUUUUGU	chr20:39803787-39804064(+)$1	277	172	210	16.5405
UGUAAGGGGGUGGUUGUCCCAGGAGGCAGCUGCUGACA	chr7:98993823-98994099(-)$1	276	139	177	13.4959
GAGUGCAUGCCUGUAGUGCACAGUGUCUCUACAGGUGU	chr7:29962792-29963107(-)$1	315	28	66	17.1169
GUGGGGCCUGUGGAAUGAGUGUGCAUGGAGGCCCUCCU	chr3:50367692-50368022(-)$1	330	84	122	15.7767
CCUGGUGUUUGGAUGGUCAGCUGGGAGUGUCCAUCAUC	chr7:44252605-44252834(+)$1	229	51	89	14.3836
GCCCGUGACGCCGCGGCCGAUGUGGCCGCGCGCGCCCU	chr19:33685380-33685758(+)$1	378	72	110	15.2125
GGGGGCCGAGUCCUUGAAUGUGGCUUCAGGGGCUCCUG	chr19:2101680-2102008(-)$1	328	120	158	17.4133
GUGGGCCGCAUUCCUGGUCCCCUGCCUGCGUCCAUCGA	chr7:1036742-1037009(-)$1	267	178	216	12.0375
cauauauaaauauauauauauuauauauauauUUCUAA	chr17:26941712-26942037(-)$1	325	280	318	15.4944
GCCAGUGCUGCCCCUCGGACUCCUCGAGGGGUUGGGUG	chr9:137024029-137024338(+)$1	309	112	150	12.9524
CUGCUCUCCAGGGACGGUUGGCACCUUCCUCGGGGGCG	chr20:61599507-61599774(+)$1	267	205	243	13.2763
AUGCCCCCUCAGCUCUUUGACAAUCACUGUGGCUGUUG	chr15:89174325-89174605(+)$1	280	227	265	13.0333
CCCCUGGGGCUUCAAGGGCAAUACCCCCGUGCUUAGGG	chr4:1815134-1815421(-)$1	287	191	229	14.7158
CAUGUGUAGUCCAGGUUUGAGAGGAACUGGAAGGGGGG	chr16:1749119-1749427(+)$1	308	108	146	13.6425
AUCAGGAGUGACUUUGUUGCCCCACACAGCCUCCUGCU	chr1:15546249-15546579(+)$1	330	140	178	12.7117
CUUCAGCCCAUCCACUCUCCUCUAGAGCAGUUGGGUUG	chr7:72855377-72855659(-)$1	282	147	185	15.9006
AUGUGGGGUUAAGUGAGGUGGGGACCAAAGGAAACAGA	chr22:29724348-29724616(-)$1	268	40	78	14.4637
UCCCUUGGGGGCUGUGGGGAUGCGCCCAAGCCCCCGAG	chr19:4445047-4445334(-)$1	287	14	52	17.0120
GCCUCUGCCCCUGGCCUUUGAGGCAAAGGCCAGCAGCA	chr1:230838667-230838879(-)$1	212	25	63	14.9562
GAUCUGGCCAAGUUGGACUUUGAUCCUUUGGGCAGAUG	chr3:48509925-48510203(-)$1	278	227	265	12.7156
CUCUUGGGUCCAGGACCUCACCAGGUCCUCGUCAGACU	chr14:99980035-99980284(-)$1	249	173	211	12.2125
GGCAGGGCCCUGAAAUGGCCUGUCCCUAGGGCUCUCCA	chr6:33161508-33161776(-)$1	268	43	81	14.3440
CUCGUUACACCGCUUUGUCCUGAGCCAAGCGAAAGACG	chr6:7883197-7883431(-)$1	234	9	47	12.1430
GACUCUGAUCUGAGGACCCCGUCGGGGUCCAGAUCAGG	chr12:49161416-49161720(-)$1	304	180	218	14.0884
aucacuugaggccaggaguuugagaccagccuggccaa	chrX:119571869-119572136(-)$1	267	184	222	14.3043
gaguuggagaugagccuggacaacauggcaaaacccca	chr14:75202714-75202969(+)$1	255	189	227	12.9090
GCUCAGUGUGGCGUCAGUGUCGGGGCUGAGCCCCUUGA	chr20:25207060-25207372(+)$1	312	175	213	12.4368
UCCCuccaagcuccuauuuuacugugucagcuggaagg	chr16:3022132-3022448(+)$1	316	17	55	14.4841
GGGAACUCCUCCUGUGGCCACCACCAAAGGAUGAGGAA	chr17:6588822-6589101(-)$1	279	151	189	14.3900
auaguggugcaugccuguaaucccagcugcucaggagc	chr1:160967684-160967937(-)$1	253	102	140	13.4581
aucacuggaggucaggaguuugagaccagccuggccaa	chr17:7484986-7485269(+)$1	283	30	68	15.0589
GAUGAAGGAGGAGGGUCAGGGCUGGCCUUCCUCUGUGC	chr11:118915153-118915397(-)$1	244	121	159	15.5936
CGCAUGUCAGCCCAGACCCCAGGGUCCUUGGCCUAGGA	chr19:39888805-39889171(+)$1	366	154	192	13.6301
GUUUCUAGCACUGGCCUGCACGGUGGGCCUUGCUGGGG	chr8:144989893-144990151(-)$1	258	185	223	16.1567

#DB
((((((((...(((.........)))...)))))))))	chr8:22277789-22278052(+)$1	1	73	111	15.3468
...((((((((((((...(....)...)))))....))	chr1:27662109-27662398(+)$1	1	81	119	12.7721
((((((((...(((((((.....))))))).)))))))	chr2:202082551-202082858(+)$1	1	248	286	16.5589
(((.((...((((((.(((....)))...))))))...	chr16:2648483-2648772(+)$1	1	203	241	13.0025
.(((((((..(((((((((......)))))))...)).	chr16:69497139-69497422(+)$1	1	197	235	13.4142
(((((((((((((..((((...)))))))))))...))	chr17:79801039-79801272(-)$1	1	138	176	14.1519
((((((((((.(((((((......)))))))...))).	chr22:47569232-47569522(+)$1	1	59	97	14.8626
..(((((((((((..(..(......)..)..)))))))	chr16:4307684-4308012(-)$1	1	142	180	17.1164
(((((.((((((((..((......))..))))).))).	chr17:38512428-38512757(+)$1	1	269	307	13.0000
(((((...(((...((((.....))))...))))))).	chr22:41697614-41697875(+)$1	1	191	229	12.7487
....(((.((((((((((.........)))))))))))	chr4:1809558-1809834(+)$1	1	43	81	13.6930
((....(((((((...((....)).)))))))....))	chr1:228675058-228675295(+)$1	1	136	174	12.7656
(((((((((.((((.(((...))).)))).))))))))	chr9:136229566-136229799(-)$1	1	150	188	13.2083
(((((...(((..((((......)))).)))..)))))	chr22:35743091-35743356(+)$1	1	154	192	13.4057
((((..(((...((((......))))..)))..)))))	chr7:75957951-75958214(-)$1	1	42	80	12.5239
(((((((....(((.........)))...)))))))))	chr7:92242665-92242939(-)$1	1	185	223	15.1214
(...(((((((..(((((...)))))..))))))).))	chr16:2036211-2036548(+)$1	1	77	115	12.8028
...))))(((.(((((((......)))))))...))).	chr9:111780154-111780421(-)$1	1	132	170	13.1006
....(((((((((((((((...))))))))))))))).	chr9:136229047-136229277(-)$1	1	174	212	16.8201
..(.((((((((((((((.....)))..))))))))))	chr17:73941013-73941246(-)$1	1	34	72	18.2080
.((((..((((..((((......))))...)))).)))	chr2:85548563-85548855(-)$1	1	57	95	12.4002
(((.(((.(((...(((......)))...))).))).)	chr20:39803787-39804064(+)$1	1	172	210	16.5405
)).)))).((((((((((......)))))))))).(((	chr7:98993823-98994099(-)$1	1	139	177	13.4959
(((.(.((((((((((.(((...)))..))))))))))	chr7:29962792-29963107(-)$1	1	28	66	17.1169
(.(((((((.....(((......)))..))))))).))	chr3:50367692-50368022(-)$1	1	84	122	15.7767
(((((((..((((((.((......)).)))))).))))	chr7:44252605-44252834(+)$1	1	51	89	14.3836
(((((((.((((((((((.....))))))).)))...)	chr19:33685380-33685758(+)$1	1	72	110	15.2125
.(((((.(((((((((((......)))))))))))..)	chr19:2101680-2102008(-)$1	1	120	158	17.4133
((((((.(((.....(((.....))))))))))))..)	chr7:1036742-1037009(-)$1	1	178	216	12.0375
(((.((.((((((((((((...)))))))))))).)).	chr17:26941712-26942037(-)$1	1	280	318	15.4944
((.(((((((((((((((.....)))))))))..))))	chr9:137024029-137024338(+)$1	1	112	150	12.9524
((((((((.(((((.(((....)))))))).)))))))	chr20:61599507-61599774(+)$1	1	205	243	13.2763
(...(((..((((((..(((...)))..).)))))..)	chr15:89174325-89174605(+)$1	1	227	265	13.0333
.(((((((.(.....(((.....)))....))))))))	chr4:1815134-1815421(-)$1	1	191	229	14.7158
(((.(.(..(((((.(((.....))))))))..).).)	chr16:1749119-1749427(+)$1	1	108	146	13.6425
(.((((((.(.((.(((......))).))))))))).)	chr1:15546249-15546579(+)$1	1	140	178	12.7117
((((((((((.(..((((.....))))..).)))))))	chr7:72855377-72855659(-)$1	1	147	185	15.9006
.((.(..(((...(..(((....)))..)...)))...	chr22:29724348-29724616(-)$1	1	40	78	14.4637
(((((((((((((.((((......))))))))))))))	chr19:4445047-4445334(-)$1	1	14	52	17.0120
)))(((((..((((((((((...))))))))))..)))	chr1:230838667-230838879(-)$1	1	25	63	14.9562
((((((.(((((..(((......)))))))).))))..	chr3:48509925-48510203(-)$1	1	227	265	12.7156
(.(..(((((((((((((....))))))).)...))))	chr14:99980035-99980284(-)$1	1	173	211	12.2125
((((((((((((....((......)))))))))))...	chr6:33161508-33161776(-)$1	1	43	81	14.3440
.(((((....(((((.((.....)).)))))...))))	chr6:7883197-7883431(-)$1	1	9	47	12.1430
(((.(((((((..(((((((...)))))))))))))))	chr12:49161416-49161720(-)$1	1	180	218	14.0884
.(((((((.(((((((.(((...)))...)))))))..	chrX:119571869-119572136(-)$1	1	184	222	14.3043
(((.(((.(.(..(((((.....)).)))..).).)))	chr14:75202714-75202969(+)$1	1	189	227	12.9090
((((((.(.(((.(((((......))))))))).))))	chr20:25207060-25207372(+)$1	1	175	213	12.4368
(((.((((.(((..(((......)))..))))))).))	chr16:3022132-3022448(+)$1	1	17	55	14.4841
.(((.(((.((((.(((......))).)))).)))...	chr17:6588822-6589101(-)$1	1	151	189	14.3900
....(((.(((.((.((......))))))))))...))	chr1:160967684-160967937(-)$1	1	102	140	13.4581
.((((((..(((((((.(((...)))...)))))))..	chr17:7484986-7485269(+)$1	1	30	68	15.0589
((((..((((((((((((....))))))))))))...)	chr11:118915153-118915397(-)$1	1	121	159	15.5936
(.(.(.(..(((..((((....))))...)))..).).	chr19:39888805-39889171(+)$1	1	154	192	13.6301
((((((((((..(((((((...))))))).))))))))	chr8:144989893-144990151(-)$1	1	185	223	16.1567

#PSSM
c : 0.14	= : 0.12	e : 0.12	[ : 0.09	d : 0.09	! : 0.09	f : 0.07	g : 0.05	i : 0.05	" : 0.03	$ : 0.03	b : 0.03	o : 0.01	# : 0.01	
e : 0.20	= : 0.12	c : 0.12	g : 0.09	" : 0.07	d : 0.07	[ : 0.07	f : 0.05	i : 0.05	$ : 0.03	b : 0.03	o : 0.01	! : 0.01	# : 0.01	
e : 0.18	= : 0.14	c : 0.10	g : 0.09	d : 0.09	f : 0.07	" : 0.05	i : 0.05	a : 0.05	$ : 0.03	# : 0.03	o : 0.01	] : 0.01	[ : 0.01	b : 0.01	
[ : 0.20	= : 0.14	d : 0.12	e : 0.12	g : 0.09	f : 0.09	i : 0.07	$ : 0.03	# : 0.03	" : 0.03	! : 0.01	c : 0.01	
= : 0.18	g : 0.12	d : 0.12	e : 0.10	f : 0.09	c : 0.09	i : 0.07	a : 0.07	! : 0.05	b : 0.03	# : 0.01	[ : 0.01	
= : 0.18	g : 0.12	c : 0.10	e : 0.10	d : 0.09	[ : 0.07	i : 0.07	! : 0.07	f : 0.07	b : 0.03	" : 0.03	# : 0.01	
= : 0.21	g : 0.14	c : 0.14	[ : 0.09	d : 0.07	i : 0.07	" : 0.05	a : 0.05	! : 0.03	f : 0.03	e : 0.03	# : 0.01	b : 0.01	
= : 0.21	g : 0.14	c : 0.12	[ : 0.09	! : 0.09	" : 0.05	i : 0.05	e : 0.05	# : 0.03	d : 0.03	f : 0.03	: : 0.01	b : 0.01	a : 0.01	
= : 0.21	c : 0.20	! : 0.12	[ : 0.12	g : 0.10	" : 0.05	i : 0.03	# : 0.03	e : 0.03	d : 0.01	f : 0.01	a : 0.01	
c : 0.21	= : 0.21	g : 0.12	e : 0.10	" : 0.05	f : 0.03	! : 0.03	[ : 0.03	# : 0.03	d : 0.03	i : 0.03	a : 0.03	$ : 0.01	
= : 0.20	c : 0.14	e : 0.12	g : 0.10	" : 0.07	[ : 0.07	d : 0.05	$ : 0.05	f : 0.03	i : 0.03	a : 0.03	b : 0.01	# : 0.01	! : 0.01	
= : 0.20	g : 0.16	e : 0.12	! : 0.10	c : 0.09	" : 0.07	$ : 0.05	f : 0.03	b : 0.03	d : 0.03	i : 0.03	a : 0.01	[ : 0.01	
g : 0.20	= : 0.20	! : 0.16	e : 0.10	" : 0.05	d : 0.05	$ : 0.05	c : 0.03	f : 0.03	b : 0.03	i : 0.01	# : 0.01	[ : 0.01	
g : 0.18	= : 0.16	e : 0.14	! : 0.10	d : 0.07	c : 0.05	" : 0.05	$ : 0.05	[ : 0.05	f : 0.03	i : 0.01	a : 0.01	# : 0.01	b : 0.01	
g : 0.18	= : 0.16	d : 0.12	c : 0.12	e : 0.07	! : 0.07	[ : 0.07	r : 0.03	f : 0.03	$ : 0.03	" : 0.01	i : 0.01	a : 0.01	# : 0.01	
c : 0.23	g : 0.18	d : 0.14	= : 0.14	[ : 0.05	! : 0.05	r : 0.03	" : 0.03	e : 0.03	a : 0.01	i : 0.01	# : 0.01	b : 0.01	
c : 0.25	g : 0.14	d : 0.12	b : 0.12	= : 0.12	[ : 0.05	r : 0.03	! : 0.03	e : 0.03	" : 0.01	o : 0.01	i : 0.01	
c : 0.21	o : 0.18	g : 0.14	= : 0.12	b : 0.10	d : 0.09	r : 0.03	e : 0.03	" : 0.01	! : 0.01	i : 0.01	
o : 0.34	n : 0.20	c : 0.10	m : 0.09	r : 0.05	g : 0.05	= : 0.05	a : 0.03	l : 0.03	d : 0.01	
o : 0.38	n : 0.20	m : 0.14	l : 0.10	c : 0.07	r : 0.05	= : 0.01	g : 0.01	
o : 0.38	l : 0.21	n : 0.20	m : 0.14	r : 0.05	
o : 0.38	n : 0.20	l : 0.18	m : 0.14	r : 0.05	c : 0.01	e : 0.01	
o : 0.36	n : 0.20	l : 0.10	r : 0.05	m : 0.05	d : 0.05	= : 0.05	c : 0.03	g : 0.03	b : 0.01	e : 0.01	
c : 0.36	o : 0.20	d : 0.12	g : 0.09	b : 0.07	= : 0.07	a : 0.01	r : 0.01	e : 0.01	i : 0.01	
c : 0.34	d : 0.14	g : 0.12	b : 0.10	= : 0.10	o : 0.03	] : 0.03	e : 0.03	3 : 0.01	r : 0.01	i : 0.01	
c : 0.32	g : 0.16	d : 0.16	= : 0.10	b : 0.07	e : 0.05	] : 0.03	3 : 0.01	a : 0.01	r : 0.01	i : 0.01	
g : 0.18	2 : 0.18	3 : 0.14	d : 0.10	= : 0.10	e : 0.09	] : 0.05	c : 0.03	i : 0.03	r : 0.01	4 : 0.01	b : 0.01	
2 : 0.20	g : 0.18	3 : 0.16	= : 0.12	e : 0.10	d : 0.05	c : 0.05	i : 0.03	] : 0.01	f : 0.01	4 : 0.01	b : 0.01	
g : 0.21	= : 0.18	3 : 0.16	e : 0.12	c : 0.10	a : 0.05	d : 0.03	i : 0.03	f : 0.01	4 : 0.01	b : 0.01	2 : 0.01	
= : 0.21	g : 0.21	c : 0.12	e : 0.10	] : 0.07	f : 0.05	3 : 0.05	2 : 0.03	i : 0.03	a : 0.03	4 : 0.01	d : 0.01	
= : 0.23	g : 0.18	c : 0.14	e : 0.10	] : 0.07	f : 0.07	i : 0.05	2 : 0.03	d : 0.03	a : 0.03	3 : 0.01	
= : 0.29	g : 0.16	c : 0.10	3 : 0.09	f : 0.07	i : 0.07	e : 0.05	2 : 0.05	d : 0.03	] : 0.03	a : 0.01	
= : 0.29	g : 0.12	3 : 0.09	c : 0.09	2 : 0.09	f : 0.07	i : 0.05	d : 0.05	4 : 0.03	e : 0.03	] : 0.03	a : 0.01	
= : 0.27	3 : 0.12	g : 0.10	d : 0.07	c : 0.07	f : 0.05	] : 0.05	i : 0.05	e : 0.05	2 : 0.05	4 : 0.03	a : 0.03	
= : 0.23	c : 0.10	g : 0.10	f : 0.09	3 : 0.09	e : 0.09	] : 0.07	d : 0.05	i : 0.05	4 : 0.03	: : 0.01	2 : 0.01	a : 0.01	
= : 0.21	3 : 0.10	c : 0.09	e : 0.09	] : 0.07	g : 0.07	4 : 0.05	d : 0.05	2 : 0.05	f : 0.05	b : 0.03	i : 0.03	h : 0.01	a : 0.01	0 : 0.01	
= : 0.21	g : 0.10	e : 0.10	2 : 0.10	c : 0.09	3 : 0.07	d : 0.05	] : 0.05	b : 0.03	i : 0.03	f : 0.03	h : 0.01	4 : 0.01	0 : 0.01	a : 0.01	
= : 0.18	e : 0.18	g : 0.09	c : 0.09	] : 0.07	3 : 0.05	i : 0.05	d : 0.05	f : 0.05	2 : 0.05	4 : 0.03	5 : 0.01	: : 0.01	h : 0.01	0 : 0.01	

#score	785.0872161539711
#seq	55
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_UTR_m2_run2.txt

#BEAR
==========yyyyyyyyyyyyyyyy========	chr22:42556275-42556565(-)$1	290	238	272	21.5512
fcccdddd[avvvvvvvvvvvvva]dddd333cc	chr17:46137221-46137505(+)$1	284	102	136	20.5242
"""==========aqqqqqqqqa]==========	chr11:35278623-35278934(-)$1	311	136	170	12.3956
[bbdddd"""bbssssssssssbb22dddd]bb2	chr17:48438159-48438429(+)$1	270	31	65	16.7135
eeee"""ddddtttttttttttdddd333eeeee	chr19:6414468-6414729(-)$1	261	194	228	20.3681
!!gggggggvvvvvvvvvvvvvggggggg22bb3	chr1:182352363-182352615(-)$1	252	101	135	20.0545
::dddd!!cccwwwwwwwwwwwwwwccc333ddd	chr6:26468869-26469202(+)$1	333	28	62	19.0561
(a[iiiiiiiiirrrrrrrrriiiiiiiii]a22	chr17:38078019-38078272(-)$1	253	95	129	13.9023
cc[iiiiiiiiissssssssssiiiiiiiii]cc	chr20:3734347-3734587(-)$1	240	160	194	19.6668
d####ddddvvvvvvvvvvvvvdddddddd4444	chr19:2426672-2426925(-)$1	253	172	206	19.5685
ffff!!ccccccuuuuuuuuuuuuccc]ccc22f	chr17:38247133-38247429(+)$1	296	71	105	20.2647
$$$$ffffffuuuuuuuuuuuuffffffgggggg	chr5:150648453-150648790(+)$1	337	147	181	19.2815
bcccffffffwwwwwwwwwwwwwwffffff]ccc	chr15:44063598-44063832(+)$1	234	82	116	19.3039
ddddbb[eeeeettttttttttteeeee]bb]dd	chr3:129273988-129274285(-)$1	297	241	275	18.9869
==========bbssssssssssbb]=========	chr16:88718527-88718805(-)$1	278	219	253	20.5459
========ddddtttttttttttdddd333====	chr1:44456461-44456867(+)$1	406	14	48	23.0303
###dddd[ddddtttttttttttdddd]dddd33	chr6:16305587-16305876(-)$1	289	39	73	21.0623
::iiiiiiiiitttttttttttiiiiiiiii:::	chr15:44063539-44063798(+)$1	259	179	213	18.3561
[bb!!a[ddddtttttttttttdddd]a]bb]bb	chr12:132414128-132414429(+)$1	301	7	41	20.2125
f[ccc[ddddxxxxxxxxxxxxxxxdddd]ccc3	chr8:120256227-120256505(+)$1	278	118	152	15.9550
===========[arrrrrrrrra]==========	chr19:47504876-47505234(+)$1	358	99	133	16.8814
g[a[eeeeevvvvvvvvvvvvveeeee]aggggg	chr12:111180532-111180742(-)$1	210	152	186	19.2589
==========bbssssssssssbb]=========	chr16:88718431-88718727(-)$1	296	141	175	20.5459
iiiiiiiii[cccqqqqqqqqccc]iiiiiiiii	chr22:37904581-37904789(-)$1	208	137	171	11.0519
dddd[dddd[bbssssssssssbb22dddd22dd	chr1:154530974-154531230(-)$1	256	184	218	16.4762
####ccc[ddddssssssssssdddd333ccc33	chr8:145537947-145538220(+)$1	273	18	52	19.0783
"==========vvvvvvvvvvvvv==========	chr17:40126219-40126490(+)$1	271	219	253	23.1898
d####gggggggssssssssssgggggggddddh	chr9:137024440-137024680(+)$1	240	20	54	18.2294
[eeeee[eeeeesssssssssseeeee]eeeee2	chr11:611778-612077(+)$1	299	71	105	16.8509
c$$$$$bb[cccssssssssssccc]bb4444cc	chr9:117029723-117029937(+)$1	214	122	156	17.5638
======!!dddduuuuuuuuuuuudddd4444==	chr11:85668926-85669179(-)$1	253	67	101	22.1699
f####bb[ddddtttttttttttdddd]bbffff	chr14:69847069-69847339(-)$1	270	208	242	20.2671
""eeeee[ddddtttttttttttdddd22eeeee	chr9:117032907-117033120(+)$1	213	137	171	20.4063
####iiiiiiiiirrrrrrrrriiiiiiiiiddd	chr9:136627001-136627262(-)$1	261	50	84	14.8555
ccc[ccc!!cccssssssssssccc22ccc]ccc	chr10:71911831-71912113(-)$1	282	238	272	18.6041
:ccc[ccc!!attttttttttta22ccc]ccc::	chr1:153932051-153932293(-)$1	242	0	34	19.1536
ddddiiiiiiiiirrrrrrrrriiiiiiiii]dd	chr20:34252615-34252829(-)$1	214	154	188	13.6854
FF::gggggggwwwwwwwwwwwwwwggggggg::	chr14:21484855-21485203(-)$1	348	234	268	16.5534
ee!!a[fffffftttttttttttffffffa22ee	chr4:1980452-1980734(+)$1	282	73	107	19.6975
:bbiiiiiiiiirrrrrrrrriiiiiiiii]bbf	chr20:34252580-34252815(-)$1	235	141	175	12.9531
eeeeee[a[bb[assssssssssa]bba]eeeee	chr9:130648511-130648776(-)$1	265	84	118	16.1275
::ccc[ccc!!attttttttttta22ccc]ccc:	chr1:153932145-153932406(-)$1	261	112	146	19.5467
]gggggggccctttttttttttcccddddccc[e	chr5:151183433-151183714(+)$1	281	37	71	20.8888
$$$$$gggggggssssssssssggggggg4444b	chrX:71492379-71492681(-)$1	302	235	269	18.4670
==========yyyyyyyyyyyyyyyy========	chr13:113976997-113977272(+)$1	275	201	235	21.5512
[eeeee[ddddwwwwwwwwwwwwwwdddd]eeee	chr1:114472341-114472644(+)$1	303	190	224	19.8107
gggggg"""cccssssssssssccc55555gggg	chr12:56990677-56990938(-)$1	261	92	126	14.8264
ffffdddd!!bbssssssssssbb22dddd]fff	chr19:974608-974903(+)$1	295	84	118	16.4919
d####gggggggssssssssssgggggggddddh	chr9:137024329-137024625(+)$1	296	131	165	18.2294
b:ccc[ccc!!attttttttttta22ccc]ccc:	chr1:153932129-153932345(-)$1	216	51	85	20.1415
[eeeee[bbvvvvvvvvvvvvvbb]eeeee]fff	chr7:44252454-44252846(+)$1	392	148	182	18.3997
"ccc[bbeeeeeuuuuuuuuuuuueeeee22bb]	chr2:74436968-74437248(+)$1	280	219	253	19.6005

#otherMatches

#Seq PSSM
CUUUUUCUUUUUGCUUUCAUUUUUAUAAAGGAAA	chr22:42556275-42556565(-)$1	290	238	272	21.5512
GGACCUGUGAGAGGAAGGGAAGGUGGCAGAAAGU	chr17:46137221-46137505(+)$1	284	102	136	20.5242
GGGGAGAUUCCUGCUAGGUGAUGCCAGGAAUCUC	chr11:35278623-35278934(-)$1	311	136	170	12.3956
AAGGCCCGAAGAACAGGUGAUAUCGGGGGCGCUG	chr17:48438159-48438429(+)$1	270	31	65	16.7135
ugggcgugaagaucguugccaccuuccaaccuac	chr19:6414468-6414729(-)$1	261	194	228	20.3681
GACAGAGGGGGUAUUGGGGUUAUUUUCUGGUAGG	chr1:182352363-182352615(-)$1	252	101	135	20.0545
CAGCUGCCUCUUUCACACCCACUACAGACCUCAG	chr6:26468869-26469202(+)$1	333	28	62	19.0561
UGGCUUGGUUCCAGAGGUGAGGGGGCCAGGGCUG	chr17:38078019-38078272(-)$1	253	95	129	13.9023
GCCUGGGGUGGGUCCCCCACUCCCCACCCCAAGC	chr20:3734347-3734587(-)$1	240	160	194	19.6668
CCCUGUGCCUUCCUGAAGUGCUGGCAGCCCAGUG	chr19:2426672-2426925(-)$1	253	172	206	19.5685
CGCCCACUCCUCAGGGGAGAGAGGGAGAGAGGAG	chr17:38247133-38247429(+)$1	296	71	105	20.2647
UGAAUGAGGCAGAUGGGAAAGAGCCUCACCAGCA	chr5:150648453-150648790(+)$1	337	147	181	19.2815
UAUUUUCUAAUUUUUUUUGUACAUUUGGAACAGU	chr15:44063598-44063832(+)$1	234	82	116	19.3039
GCCUUUGUCCUGAGAUAGCCAAGCGGGAGAAUGG	chr3:129273988-129274285(-)$1	297	241	275	18.9869
GGUGGUCCCUCCAGCGGACCAGGGAAGGGGUCAC	chr16:88718527-88718805(-)$1	278	219	253	20.5459
CCCCUAGGGCCUGGAAGGGUGGGAGGUAUGUCUA	chr1:44456461-44456867(+)$1	406	14	48	23.0303
UUUCAUUUCUGCUUUUUACUAGUGCAGCGAUGUC	chr6:16305587-16305876(-)$1	289	39	73	21.0623
AUAAAUGAGACCCCUUUAAACUGUCUUAUUUUCC	chr15:44063539-44063798(+)$1	259	179	213	18.3561
GGUCAGGGGUCAGAAGGAACAGGGCUGCAGCGUC	chr12:132414128-132414429(+)$1	301	7	41	20.2125
uagccugugggccauaguuugucaaccacugGUG	chr8:120256227-120256505(+)$1	278	118	152	15.9550
GCAugugcguggggugggggugugugugcacaug	chr19:47504876-47505234(+)$1	358	99	133	16.8814
GGCGUGGGAAAGGAGGUGUGAGUcccgggcgcga	chr12:111180532-111180742(-)$1	210	152	186	19.2589
GGUGGUCCCUCCAGCGGACCAGGGAAGGGGUCAC	chr16:88718431-88718727(-)$1	296	141	175	20.5459
UCCUGCUGGACAUCCUAGAGCAUGACUGGCGGGA	chr22:37904581-37904789(-)$1	208	137	171	11.0519
gcggagcggagcggagGAUgcagcagccgcagcc	chr1:154530974-154531230(-)$1	256	184	218	16.4762
CAAAGCCAAGGACCCCACUGUCUCCUAGAGGCCC	chr8:145537947-145538220(+)$1	273	18	52	19.0783
UCCuugucuuuuuucuuuguuuuuagagacaggg	chr17:40126219-40126490(+)$1	271	219	253	23.1898
AGCUUGGGUCCUGGGUCUACAGAGGGCCCUGGCC	chr9:137024440-137024680(+)$1	240	20	54	18.2294
GUCGGGAGUGGCGGGAAUCGGGGCCAUGCCCGGG	chr11:611778-612077(+)$1	299	71	105	16.8509
GGAUGAAAGAAGAGAAAAAUGACUUGUUGAAACC	chr9:117029723-117029937(+)$1	214	122	156	17.5638
CUUCUUUUCACUAAAACUCUAGAAGGUGUUACAA	chr11:85668926-85669179(-)$1	253	67	101	22.1699
ACUGUAUUAGAUGAAAUGUGAGGAUCUUGUUCAA	chr14:69847069-69847339(-)$1	270	208	242	20.2671
GACCUGAUGGGCUGAAGGUAAGUGCCCUUUUAGG	chr9:117032907-117033120(+)$1	213	137	171	20.4063
GUGUCCCCUGCAGGGGGCUAAACUGCAGGGGCCU	chr9:136627001-136627262(-)$1	261	50	84	14.8555
AAUGUAAUUGGUAUCCCUCCUAACUUUUUGAGUU	chr10:71911831-71912113(-)$1	282	238	272	18.6041
AGAGGUUGGACACUAUACAUAAGGACAGGCUCAC	chr1:153932051-153932293(-)$1	242	0	34	19.1536
CUCCCGCAGCCCCUGAACGGGUGGGGCUGUGCGG	chr20:34252615-34252829(-)$1	214	154	188	13.6854
ACAACUUCUGCUAUAACAAUAAACUGUAGAGGAA	chr14:21484855-21485203(-)$1	348	234	268	16.5534
GCGGCAUCGGUCAGAAGCACCAAGACUGAGAAGC	chr4:1980452-1980734(+)$1	282	73	107	19.6975
UCCCGCAGCCCCUGAACGGGUGGGGCUGUGCGGG	chr20:34252580-34252815(-)$1	235	141	175	12.9531
UGGGAGUCUAUGCGGUUAAUCAGGGGUGUCUUUC	chr9:130648511-130648776(-)$1	265	84	118	16.1275
CAGAGGUUGGACACUAUACAUAAGGACAGGCUCA	chr1:153932145-153932406(-)$1	261	112	146	19.5467
GUCUGAAUGUCGAAGAGAAGAAGACUCGAGCUGC	chr5:151183433-151183714(+)$1	281	37	71	20.8888
UUUUGUGGGUUGUUUUUUUUUUUAAUUCAGUUUC	chrX:71492379-71492681(-)$1	302	235	269	18.4670
GCUCUAAAUUGGCUCCAUAUCAUUUGAGUUUAGG	chr13:113976997-113977272(+)$1	275	201	235	21.5512
GCUCGCGGCUGAGAACCAGACACACCGGCGGUGA	chr1:114472341-114472644(+)$1	303	190	224	19.8107
CUCCCUUCAGAGAUUACGGGUACUUGCACUGGGG	chr12:56990677-56990938(-)$1	261	92	126	14.8264
GAGGGGCCGUGCAGGGUCGAGGGCUGGGUCGUCU	chr19:974608-974903(+)$1	295	84	118	16.4919
AGCUUGGGUCCUGGGUCUACAGAGGGCCCUGGCC	chr9:137024329-137024625(+)$1	296	131	165	18.2294
CAGAGGUUGGACACUAUACAUAAGGACAGGCUCA	chr1:153932129-153932345(-)$1	216	51	85	20.1415
GGGUUCGUACCAGCAAGUAGACUAGGAACUGAGC	chr7:44252454-44252846(+)$1	392	148	182	18.3997
GCUUUCAGGGAACACUGUCCUUUUUUCCCCAUGU	chr2:74436968-74437248(+)$1	280	219	253	19.6005

#DB
((((((((((................))))))))	chr22:42556275-42556565(-)$1	1	238	272	21.5512
((((((((.(.............).))))...))	chr17:46137221-46137505(+)$1	1	102	136	20.5242
...(((((((((((........).))))))))))	chr11:35278623-35278934(-)$1	1	136	170	12.3956
.((((((...((..........))..)))).)).	chr17:48438159-48438429(+)$1	1	31	65	16.7135
((((...((((...........))))...)))))	chr19:6414468-6414729(-)$1	1	194	228	20.3681
..(((((((.............)))))))..)).	chr1:182352363-182352615(-)$1	1	101	135	20.0545
..((((..(((..............)))...)))	chr6:26468869-26469202(+)$1	1	28	62	19.0561
.(.(((((((((.........))))))))).)..	chr17:38078019-38078272(-)$1	1	95	129	13.9023
((.(((((((((..........))))))))).))	chr20:3734347-3734587(-)$1	1	160	194	19.6668
(....((((.............))))))))....	chr19:2426672-2426925(-)$1	1	172	206	19.5685
((((..((((((............))).)))..)	chr17:38247133-38247429(+)$1	1	71	105	20.2647
....((((((............))))))))))))	chr5:150648453-150648790(+)$1	1	147	181	19.2815
((((((((((..............)))))).)))	chr15:44063598-44063832(+)$1	1	82	116	19.3039
((((((.(((((...........))))).)).))	chr3:129273988-129274285(-)$1	1	241	275	18.9869
((((((((((((..........)).)))))))))	chr16:88718527-88718805(-)$1	1	219	253	20.5459
((((((((((((...........))))...))))	chr1:44456461-44456867(+)$1	1	14	48	23.0303
...((((.((((...........)))).))))..	chr6:16305587-16305876(-)$1	1	39	73	21.0623
..(((((((((...........)))))))))...	chr15:44063539-44063798(+)$1	1	179	213	18.3561
.((..(.((((...........)))).).)).))	chr12:132414128-132414429(+)$1	1	7	41	20.2125
(.(((.((((...............)))).))).	chr8:120256227-120256505(+)$1	1	118	152	15.9550
(((((((((((.(.........).))))))))))	chr19:47504876-47505234(+)$1	1	99	133	16.8814
(.(.(((((.............))))).))))))	chr12:111180532-111180742(-)$1	1	152	186	19.2589
((((((((((((..........)).)))))))))	chr16:88718431-88718727(-)$1	1	141	175	20.5459
(((((((((.(((........))).)))))))))	chr22:37904581-37904789(-)$1	1	137	171	11.0519
((((.((((.((..........))..))))..))	chr1:154530974-154531230(-)$1	1	184	218	16.4762
....(((.((((..........))))...)))..	chr8:145537947-145538220(+)$1	1	18	52	19.0783
.((((((((((.............))))))))))	chr17:40126219-40126490(+)$1	1	219	253	23.1898
(....(((((((..........))))))))))))	chr9:137024440-137024680(+)$1	1	20	54	18.2294
.(((((.(((((..........))))).))))).	chr11:611778-612077(+)$1	1	71	105	16.8509
(.....((.(((..........))).))....))	chr9:117029723-117029937(+)$1	1	122	156	17.5638
((((((..((((............))))....))	chr11:85668926-85669179(-)$1	1	67	101	22.1699
(....((.((((...........)))).))))))	chr14:69847069-69847339(-)$1	1	208	242	20.2671
..(((((.((((...........))))..)))))	chr9:117032907-117033120(+)$1	1	137	171	20.4063
....(((((((((.........))))))))))))	chr9:136627001-136627262(-)$1	1	50	84	14.8555
(((.(((..(((..........)))..))).)))	chr10:71911831-71912113(-)$1	1	238	272	18.6041
.(((.(((..(...........)..))).)))..	chr1:153932051-153932293(-)$1	1	0	34	19.1536
(((((((((((((.........))))))))).))	chr20:34252615-34252829(-)$1	1	154	188	13.6854
))..(((((((..............)))))))..	chr14:21484855-21485203(-)$1	1	234	268	16.5534
((..(.((((((...........)))))))..))	chr4:1980452-1980734(+)$1	1	73	107	19.6975
.(((((((((((.........))))))))).))(	chr20:34252580-34252815(-)$1	1	141	175	12.9531
)(((((.(.((.(..........).))).)))))	chr9:130648511-130648776(-)$1	1	84	118	16.1275
..(((.(((..(...........)..))).))).	chr1:153932145-153932406(-)$1	1	112	146	19.5467
.)))))))(((...........)))(((((((.(	chr5:151183433-151183714(+)$1	1	37	71	20.8888
.....(((((((..........)))))))....)	chrX:71492379-71492681(-)$1	1	235	269	18.4670
((((((((((................))))))))	chr13:113976997-113977272(+)$1	1	201	235	21.5512
.(((((.((((..............)))).))))	chr1:114472341-114472644(+)$1	1	190	224	19.8107
((((((...(((..........))).....))))	chr12:56990677-56990938(-)$1	1	92	126	14.8264
((((((((..((..........))..)))).)))	chr19:974608-974903(+)$1	1	84	118	16.4919
(....(((((((..........))))))))))))	chr9:137024329-137024625(+)$1	1	131	165	18.2294
).(((.(((..(...........)..))).))).	chr1:153932129-153932345(-)$1	1	51	85	20.1415
.(((((.((.............)).))))).)))	chr7:44252454-44252846(+)$1	1	148	182	18.3997
.(((.(((((((............)))))..)).	chr2:74436968-74437248(+)$1	1	219	253	19.6005

#PSSM
= : 0.13	d : 0.11	f : 0.09	[ : 0.09	: : 0.09	" : 0.07	e : 0.05	c : 0.05	# : 0.05	$ : 0.03	b : 0.03	g : 0.03	! : 0.01	( : 0.01	i : 0.01	F : 0.01	] : 0.01	
= : 0.15	# : 0.13	c : 0.11	e : 0.11	: : 0.07	b : 0.05	$ : 0.05	d : 0.05	" : 0.03	f : 0.03	[ : 0.03	g : 0.03	! : 0.01	a : 0.01	i : 0.01	F : 0.01	
= : 0.15	c : 0.15	# : 0.13	e : 0.11	d : 0.07	b : 0.05	g : 0.05	$ : 0.05	[ : 0.03	f : 0.03	i : 0.03	" : 0.01	a : 0.01	: : 0.01	! : 0.01	
= : 0.17	c : 0.13	d : 0.11	e : 0.11	# : 0.11	i : 0.09	g : 0.05	$ : 0.05	f : 0.03	! : 0.03	[ : 0.03	: : 0.01	
= : 0.17	i : 0.13	e : 0.11	d : 0.09	c : 0.09	g : 0.07	# : 0.07	[ : 0.05	! : 0.03	f : 0.03	$ : 0.03	" : 0.01	b : 0.01	a : 0.01	
= : 0.17	d : 0.13	g : 0.13	i : 0.13	e : 0.11	[ : 0.07	b : 0.05	c : 0.05	f : 0.03	" : 0.01	! : 0.01	a : 0.01	$ : 0.01	
= : 0.15	d : 0.13	i : 0.13	g : 0.11	c : 0.11	[ : 0.11	f : 0.05	b : 0.05	" : 0.03	! : 0.03	e : 0.03	
= : 0.15	d : 0.15	i : 0.13	g : 0.11	c : 0.07	e : 0.07	[ : 0.07	! : 0.05	f : 0.05	" : 0.03	b : 0.03	a : 0.01	
d : 0.23	= : 0.13	i : 0.13	g : 0.09	c : 0.09	e : 0.07	[ : 0.05	f : 0.05	! : 0.05	" : 0.03	b : 0.01	
d : 0.19	= : 0.13	c : 0.11	i : 0.11	v : 0.07	g : 0.07	! : 0.07	f : 0.05	e : 0.05	[ : 0.03	a : 0.01	" : 0.01	b : 0.01	
d : 0.17	c : 0.13	b : 0.11	i : 0.11	v : 0.09	g : 0.07	= : 0.05	e : 0.05	y : 0.03	! : 0.03	u : 0.01	w : 0.01	x : 0.01	a : 0.01	f : 0.01	
v : 0.11	d : 0.11	b : 0.09	t : 0.09	i : 0.09	c : 0.09	w : 0.07	e : 0.05	g : 0.05	y : 0.03	[ : 0.03	a : 0.03	= : 0.01	u : 0.01	x : 0.01	f : 0.01	
s : 0.26	t : 0.24	v : 0.11	w : 0.07	u : 0.07	y : 0.03	r : 0.03	a : 0.03	i : 0.03	= : 0.01	x : 0.01	c : 0.01	
s : 0.28	t : 0.24	v : 0.11	r : 0.09	w : 0.07	u : 0.07	y : 0.03	a : 0.01	x : 0.01	q : 0.01	
s : 0.28	t : 0.24	v : 0.11	r : 0.09	w : 0.07	u : 0.07	y : 0.03	q : 0.03	x : 0.01	
s : 0.28	t : 0.24	v : 0.11	r : 0.09	w : 0.07	u : 0.07	y : 0.03	q : 0.03	x : 0.01	
s : 0.28	t : 0.24	v : 0.11	r : 0.09	w : 0.07	u : 0.07	y : 0.03	q : 0.03	x : 0.01	
s : 0.28	t : 0.24	v : 0.11	r : 0.09	w : 0.07	u : 0.07	y : 0.03	q : 0.03	x : 0.01	
s : 0.28	t : 0.24	v : 0.11	r : 0.09	w : 0.07	u : 0.07	y : 0.03	q : 0.03	x : 0.01	
s : 0.28	t : 0.24	v : 0.11	r : 0.09	w : 0.07	u : 0.07	y : 0.03	q : 0.03	x : 0.01	
s : 0.28	t : 0.24	v : 0.11	r : 0.09	w : 0.07	u : 0.07	y : 0.03	q : 0.03	x : 0.01	
s : 0.28	t : 0.24	v : 0.11	w : 0.07	u : 0.07	r : 0.05	y : 0.03	i : 0.03	q : 0.01	x : 0.01	c : 0.01	
t : 0.15	b : 0.11	i : 0.11	c : 0.09	d : 0.07	g : 0.07	w : 0.07	a : 0.05	u : 0.05	y : 0.03	v : 0.03	e : 0.03	f : 0.01	x : 0.01	s : 0.01	
d : 0.15	b : 0.11	i : 0.11	c : 0.09	a : 0.07	g : 0.07	w : 0.07	u : 0.05	e : 0.05	y : 0.03	] : 0.03	f : 0.03	x : 0.01	v : 0.01	2 : 0.01	
d : 0.17	] : 0.11	2 : 0.11	i : 0.11	c : 0.09	g : 0.07	e : 0.07	= : 0.05	w : 0.05	f : 0.05	y : 0.03	x : 0.01	
d : 0.24	i : 0.13	2 : 0.11	= : 0.09	g : 0.09	e : 0.09	c : 0.05	f : 0.05	y : 0.03	] : 0.01	b : 0.01	5 : 0.01	
d : 0.24	= : 0.13	i : 0.13	g : 0.09	c : 0.09	e : 0.09	f : 0.05	3 : 0.03	b : 0.03	] : 0.01	2 : 0.01	5 : 0.01	
d : 0.17	= : 0.13	i : 0.13	g : 0.09	c : 0.09	] : 0.09	3 : 0.05	f : 0.05	e : 0.05	a : 0.03	b : 0.01	2 : 0.01	5 : 0.01	
d : 0.17	= : 0.13	i : 0.13	g : 0.11	3 : 0.07	c : 0.07	] : 0.07	e : 0.05	f : 0.03	4 : 0.03	a : 0.01	b : 0.01	2 : 0.01	5 : 0.01	
= : 0.13	d : 0.13	i : 0.13	e : 0.09	c : 0.09	] : 0.07	3 : 0.05	g : 0.05	b : 0.05	4 : 0.05	2 : 0.03	f : 0.01	a : 0.01	5 : 0.01	
= : 0.15	] : 0.13	c : 0.13	e : 0.09	i : 0.09	2 : 0.07	4 : 0.07	g : 0.07	d : 0.05	3 : 0.03	b : 0.03	f : 0.01	
= : 0.15	c : 0.15	e : 0.09	d : 0.09	b : 0.07	] : 0.07	4 : 0.07	g : 0.07	2 : 0.05	f : 0.05	3 : 0.01	a : 0.01	: : 0.01	i : 0.01	
= : 0.17	c : 0.15	d : 0.13	e : 0.11	b : 0.09	g : 0.05	: : 0.05	f : 0.05	2 : 0.03	4 : 0.03	3 : 0.03	i : 0.01	[ : 0.01	
= : 0.17	e : 0.11	c : 0.09	d : 0.09	f : 0.09	: : 0.09	3 : 0.07	2 : 0.05	g : 0.05	b : 0.03	h : 0.03	4 : 0.01	i : 0.01	] : 0.01	

#score	962.3561806014388
#seq	52
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_transcript_m2_run2.txt

#BEAR
eggggggg[dddd[ddddllldddddddd]gggg	chr11:85371495-85371758(-)$1	263	40	74	11.0928
bggggggg!!bb!!ddddmmmmdddd]bb22ggg	chr6:160210193-160210409(-)$1	216	172	206	11.8400
ccc[dddd[ccc[ddddnnnnndddd]ccc]ddd	chr15:63967182-63967483(-)$1	301	61	95	12.1495
ddddd!!ccc"""cccooooooccc333ccc]dd	chr12:53415379-53415623(+)$1	244	117	151	14.7868
gggggccc!!ccc[bblllbb]ccc333ccc]gg	chr7:148513703-148513940(-)$1	237	171	205	10.8063
ffffff!!dddd!!cccnnnnnccc22dddd22f	chr6:112397199-112397463(-)$1	264	213	247	12.8156
=========="""ddddmmmmdddd22=======	chr5:126883846-126884129(+)$1	283	186	220	14.8807
ddd"""ccc[ccc[cccnnnnnccc]ccc4444c	chrX:41082319-41082610(+)$1	291	39	73	12.8351
eeeeeeedddd!!cccoooooocccdddd]eeee	chr2:170804267-170804545(+)$1	278	195	229	11.3324
hhhhhh[ccc"""cccooooooccc22ccc]hhh	chr7:30407069-30407363(+)$1	294	235	269	13.9661
ggggggggggg[eeeeemmmmeeeee4444gggg	chr4:83345893-83346141(-)$1	248	192	226	10.1281
eeeee[dddd[a[cccooooooccca]dddd]ee	chr19:46175995-46176251(+)$1	256	107	141	11.9619
+eeeee"""cccddddoooooodddd]ccc]eee	chr2:187370065-187370321(+)$1	256	48	82	11.2557
iiiiii"""bb####ccclllccc333bb333ii	chr6:31607946-31608186(-)$1	240	132	166	15.1908
eggggggg!!eeeeecccmmmmccc]eeeee]gg	chr2:196600441-196600690(+)$1	249	207	241	10.2751
bb[ffffff[bb!!cccnnnnnccc22bb]ffff	chr17:62498198-62498409(-)$1	211	31	65	12.6763
ddd[dddd[ccc!!ddddllldddd22ccc]ddd	chr1:151196608-151196856(+)$1	248	191	225	13.0053
"""eeeee[bb####bbmmmmbb4444bb]eeee	chr7:50663079-50663343(-)$1	264	44	78	10.7709
=========####ddddoooooodddd=======	chr13:107211337-107211588(-)$1	251	27	61	13.8089
::==========!!cccmmmmccc==========	chr12:104714756-104715031(+)$1	275	227	261	11.8801
ffff[eeeee[bb[cccnnnnnccc22bb22eee	chr7:26239226-26239483(-)$1	257	120	154	12.2677
gggg!!ffffff!!cccnnnnnccc4444fffff	chr5:179048012-179048287(-)$1	275	160	194	12.7155
gggggggg[a####ddddmmmmdddda]gggggg	chr6:15468661-15468915(+)$1	254	34	68	12.7825
ggggggg!!ddddcccooooooccc333dddd22	chr18:2700408-2700658(+)$1	250	171	205	13.1084
ddd[eeeee####ddddmmmmdddd22eeeeedd	chr11:85374474-85374730(-)$1	256	123	157	12.0468
diiiiiiiii$$$$$ccclllccc333iiiiiii	chr21:22856562-22856839(+)$1	277	43	77	14.1469
gggg####dddd[ddddmmmmdddd22dddd22g	chr12:132197950-132198203(+)$1	253	142	176	11.6913
dddd[ggggggg"""bbnnnnnbb333ggggggg	chr10:120450779-120451028(-)$1	249	183	217	12.4247
hhhhhh!!eeeee[cccnnnnnccc22eeeeehh	chr1:1254154-1254425(-)$1	271	205	239	11.4572
:::ccc[ccc"""ddddmmmmdddd333cccccc	chr11:43467372-43467622(+)$1	250	105	139	11.0885
ddddddd[bb####ddddllldddd333bb]ddd	chr4:25821416-25821681(-)$1	265	183	217	12.6440
f!!ccc####ccc[cccnnnnnccc]ccc4444c	chr3:195794378-195794640(-)$1	262	211	245	12.9903
D::eeeeeccc"""cccmmmmccc333ccc4444	chr20:34214165-34214414(-)$1	249	130	164	11.4012
##eeeee[ccc!!cccbbnnnnnbb22ccc333c	chr1:39796769-39797021(+)$1	252	186	220	12.1593
ffffff[ccc####eeeeellleeeeeccc333f	chr15:51770390-51770657(-)$1	267	156	190	10.5217
ccc[eeeee"""ddddoooooodddd22eeeee]	chr4:10075979-10076256(-)$1	277	107	141	12.1995
ggggg[ccc==========lll==========]c	chr22:32880939-32881190(+)$1	251	25	59	12.0474
$$$$dddd[bb"""cccnnnnnccc22bbdddd5	chr18:2729170-2729421(+)$1	251	44	78	12.4948
ggggggg[ccc[bbddddllldddd22bb]ccc]	chrX:55046781-55047062(-)$1	281	143	177	12.9217
F::ggggggg!!ddddoooooodddd22gggggg	chr11:74976953-74977218(-)$1	265	11	45	10.8388
eeeebb[ccc####ddddooooooddddccc]bb	chrX:44941852-44942109(+)$1	257	122	156	10.5787
iiiiiiii[bb[a[ccclllccca]bb]iiiiii	chr21:36260643-36260901(-)$1	258	2	36	11.4497
""eeeeeiiiiiiiiiooooooiiiiiiiii333	chr8:103282247-103282518(-)$1	271	134	168	11.7342
ddd[iiiiiiiii"""ccclllccc22iiiiiii	chr12:131286065-131286314(-)$1	249	182	216	13.0826
[bb"""ccc[bb!!cccnnnnnccc22bbccc33	chr2:179462322-179462568(+)$1	246	126	160	14.2378
==ccc[cccbb"""ccc[ammmma]ccc333bb]	chr17:74730517-74730755(-)$1	238	150	184	10.5520
bbdddd"""bb"""ddddllldddd22bb333dd	chr15:44830654-44830912(+)$1	258	140	174	13.6033
[ccc"""ccc!!bbcccnnnnnccc22bb22ccc	chr8:64081805-64082067(+)$1	262	15	49	13.6671
:::iiiiiiiii!!cccmmmmccc333iiiiiii	chr16:71956119-71956383(+)$1	264	4	38	11.6922
e####ccc[ccc[cccoooooocccccc]ccc22	chr1:101440257-101440503(+)$1	246	111	145	12.0231
ff####dddd####cccmmmmccc4444dddd55	chr1:93804716-93804954(-)$1	238	39	73	10.9830
"ccc!!dddd!!addddnnnnndddd]a22dddd	chr12:64838735-64838989(+)$1	254	54	88	11.6962
"bb!!bb[dddd[ddddmmmmdddd22ddddbb]	chr20:43138466-43138770(-)$1	304	110	144	10.3889
!ggggggg[bb"""cccnnnnnccc22bbggggg	chr17:48829438-48829642(+)$1	204	105	139	15.6565

#otherMatches

#Seq PSSM
AGAAGUGUUCAAAAUAUUUUAAAUAUUUGUGCAU	chr11:85371495-85371758(-)$1	263	40	74	11.0928
GCCGCGCGCGGCAGGGUUUUGAGACCGGCAACGC	chr6:160210193-160210409(-)$1	216	172	206	11.8400
GUAUUGUGUACAUGAUGCACCUUAUUUUGUCUAC	chr15:63967182-63967483(-)$1	301	61	95	12.1495
UAGUGCUUCUGCUAUGCCCAGACGUUCAAGGUCA	chr12:53415379-53415623(+)$1	244	117	151	14.7868
CUGUCAUGAAGCUCCUUAGAGAAGUCAACAUAGA	chr7:148513703-148513940(-)$1	237	171	205	10.8063
GAAGCCAAAGAGUCUGGUUACUUCAAGUUCUGGG	chr6:112397199-112397463(-)$1	264	213	247	12.8156
UUAGAAACCUUAUAGGCACGUGUCUUUAGGUUUU	chr5:126883846-126884129(+)$1	283	186	220	14.8807
AAGAUAUUUUGUAUAACUACUUGUUUUAUUCAUG	chrX:41082319-41082610(+)$1	291	39	73	12.8351
AUUUUCAUUAACUAGCAACAUGGCUUUAACUGGA	chr2:170804267-170804545(+)$1	278	195	229	11.3324
AUGAUUCCAGCUCAGAUAACAUUUUCCCUGAAGU	chr7:30407069-30407363(+)$1	294	235	269	13.9661
UCUAGUGUACAAGACACCAUUGUGUCCAACUGUA	chr4:83345893-83346141(-)$1	248	192	226	10.1281
CCACAGUGGCUGCAGGUUUCGUCCUCCGCCAGUG	chr19:46175995-46176251(+)$1	256	107	141	11.9619
ACUGCAACUAAGCACUAUUUGAGGUGACUUCUGU	chr2:187370065-187370321(+)$1	256	48	82	11.2557
UCAGAGCCAGCGGAAGGUGAAACCGCAGCCCCCU	chr6:31607946-31608186(-)$1	240	132	166	15.1908
UUUUCCUAUUUUAACAGUACCAACUAGUUAAUUG	chr2:196600441-196600690(+)$1	249	207	241	10.2751
AUGUGAGUUUAAUAACACAACUUGUCUUUUAACU	chr17:62498198-62498409(-)$1	211	31	65	12.6763
GGAUAGAAGGAACCUGUUUAUGACAUUUUUAUUU	chr1:151196608-151196856(+)$1	248	191	225	13.0053
aagagagugugugugugugAUUAGUUCCAGAUUU	chr7:50663079-50663343(-)$1	264	44	78	10.7709
ACUUUUUGAUUUAAUGGAACUGGCUAUUUGAGAA	chr13:107211337-107211588(-)$1	251	27	61	13.8089
AUGGUUAGGUCCAUUCUUCUUAGAGGAUUUGACC	chr12:104714756-104715031(+)$1	275	227	261	11.8801
GUUUUAUCUGGGUCUGCAGUCAGUAAAACGACAG	chr7:26239226-26239483(-)$1	257	120	154	12.2677
GCAGCUCUUCCUAGCUUAUCUAAAGACCCAGGAA	chr5:179048012-179048287(-)$1	275	160	194	12.7155
GUUUCAUUGUGGUGUUCCUUCUGGAAAGGGUGAG	chr6:15468661-15468915(+)$1	254	34	68	12.7825
GAAAGCAGCUAGAGGGAAAAGGCCUAUUUUUGAA	chr18:2700408-2700658(+)$1	250	171	205	13.1084
UGUAGGGGUUACAGAACAGUCGUUCCCGCCUCAC	chr11:85374474-85374730(-)$1	256	123	157	12.0468
AGGUUUGCAUUAAUUGUUAAUGACUUUGUGUAAA	chr21:22856562-22856839(+)$1	277	43	77	14.1469
UUUUACCUCCAAUGGACGCAAGUUUCUUUGGUGA	chr12:132197950-132198203(+)$1	253	142	176	11.6913
UGAACUUUCUGAAUAUGCUGCUCAAGAUCAGAAA	chr10:120450779-120451028(-)$1	249	183	217	12.4247
GGUGAAAUUCCAUUUCUGACAAAGAUUAUGGGUU	chr1:1254154-1254425(-)$1	271	205	239	11.4572
uagggcuacuagacuggaagaccaggaaagugcc	chr11:43467372-43467622(+)$1	250	105	139	11.0885
CUGAGGUUCAAGAAAUAGUAUCUGUGUAUGCAUC	chr4:25821416-25821681(-)$1	265	183	217	12.6440
GUCCAGACAAUCUCCAGAGCUGCUGCAGAAAAGC	chr3:195794378-195794640(-)$1	262	211	245	12.9903
CACAGACCGUGCUCGCAGAAGUGCCCACACAACU	chr20:34214165-34214414(-)$1	249	130	164	11.4012
CUUGACCAAGACACAGGCCUAGUGCUUCUGGAAU	chr1:39796769-39797021(+)$1	252	186	220	12.1593
UUUACCAAGCAUUAUGUGACAGUCAUAGCUACAG	chr15:51770390-51770657(-)$1	267	156	190	10.5217
CUUCCUUUUCUUUUUCAGUGCAGAAAUUAAAAGU	chr4:10075979-10076256(-)$1	277	107	141	12.1995
UCAAACAAGUUAGGAGUCUUUUGGAUUUUUAAUC	chr22:32880939-32881190(+)$1	251	25	59	12.0474
ACGGAAGAAUCAAAUAUAUUUAAUAGGGGUCUUA	chr18:2729170-2729421(+)$1	251	44	78	12.4948
UGGUGCUGGAGCUGGUGGCACCCGCAACAUCUCA	chrX:55046781-55047062(-)$1	281	143	177	12.9217
GACGGGCCGGCCCUGCCUCCACGUGGCUCCGGCU	chr11:74976953-74977218(-)$1	265	11	45	10.8388
GAAAGGACCCUUUAAAACCAUAAAGUUUGGGACC	chrX:44941852-44942109(+)$1	257	122	156	10.5787
CUUCUUUCCGGGGCUCCUAGGGACGCCAGAAGGA	chr21:36260643-36260901(-)$1	258	2	36	11.4497
CACUAGGCCCUUUAGACCAGCCUCUGAAGGGAAU	chr8:103282247-103282518(-)$1	271	134	168	11.7342
CUAACAACUAUGAUUGUAGUUGCUAACUUAUGGU	chr12:131286065-131286314(-)$1	249	182	216	13.0826
AGGCUUUCCAGACACAUAGGCAAUGAUUCGGAUC	chr2:179462322-179462568(+)$1	246	126	160	14.2378
UAAGGUGGCGUGUUGCAGUGCAGAGUGCUUGGCU	chr17:74730517-74730755(-)$1	238	150	184	10.5520
UCCGAUUUACUGACAGCCUGAGGUUCAAGAAUGU	chr15:44830654-44830912(+)$1	258	140	174	13.6033
UGGUGGGUUUUUACUCCUACGCGGAUAGUCUAAA	chr8:64081805-64082067(+)$1	262	15	49	13.6671
CCACAGUUGGAAACACCAUCagguccauuccagc	chr16:71956119-71956383(+)$1	264	4	38	11.6922
GGAGUGAGACAGCUCUACGUACAGAUUGACUUUG	chr1:101440257-101440503(+)$1	246	111	145	12.0231
AGGUAAGCUUAAUCAUGUUCUCAUAUUGAAGCAG	chr1:93804716-93804954(-)$1	238	39	73	10.9830
CGAAUUACAAUGGAUUUAAUACAAAUACAUUUGU	chr12:64838735-64838989(+)$1	254	54	88	11.6962
UUGUUGGCAUGAUAGGGGCCGCCCUCUUCAUCCU	chr20:43138466-43138770(-)$1	304	110	144	10.3889
CAAAUUUUGCGUUGUAGGACUACUGUUCGAAGAU	chr17:48829438-48829642(+)$1	204	105	139	15.6565

#DB
)(((((((.((((.((((...)))))))).))))	chr11:85371495-85371758(-)$1	1	40	74	11.0928
((((((((..((..((((....)))).))..)))	chr6:160210193-160210409(-)$1	1	172	206	11.8400
(((.((((.(((.((((.....)))).))).)))	chr15:63967182-63967483(-)$1	1	61	95	12.1495
(((((..(((...(((......)))...))).))	chr12:53415379-53415623(+)$1	1	117	151	14.7868
((((((((..(((.((...)).)))...))).))	chr7:148513703-148513940(-)$1	1	171	205	10.8063
((((((..((((..(((.....)))..))))..)	chr6:112397199-112397463(-)$1	1	213	247	12.8156
((((((((((...((((....))))..)))))))	chr5:126883846-126884129(+)$1	1	186	220	14.8807
(((...(((.(((.(((.....))).)))....)	chrX:41082319-41082610(+)$1	1	39	73	12.8351
))(((((((((..(((......))))))).))))	chr2:170804267-170804545(+)$1	1	195	229	11.3324
((((((.(((...(((......)))..))).)))	chr7:30407069-30407363(+)$1	1	235	269	13.9661
))))(((((((.(((((....)))))....))))	chr4:83345893-83346141(-)$1	1	192	226	10.1281
(((((.((((.(.(((......)))).)))).))	chr19:46175995-46176251(+)$1	1	107	141	11.9619
.(((((...(((((((......)))).))).)))	chr2:187370065-187370321(+)$1	1	48	82	11.2557
((((((...((....(((...)))...))...))	chr6:31607946-31608186(-)$1	1	132	166	15.1908
)(((((((..((((((((....))).))))).))	chr2:196600441-196600690(+)$1	1	207	241	10.2751
((.((((((.((..(((.....)))..)).))))	chr17:62498198-62498409(-)$1	1	31	65	12.6763
(((.((((.(((..((((...))))..))).)))	chr1:151196608-151196856(+)$1	1	191	225	13.0053
...(((((.((....((....))....)).))))	chr7:50663079-50663343(-)$1	1	44	78	10.7709
(((((((((....((((......)))))))))))	chr13:107211337-107211588(-)$1	1	27	61	13.8089
..((((((((((..(((....)))))))))))))	chr12:104714756-104715031(+)$1	1	227	261	11.8801
((((.(((((.((.(((.....)))..))..)))	chr7:26239226-26239483(-)$1	1	120	154	12.2677
((((..((((((..(((.....)))....)))))	chr5:179048012-179048287(-)$1	1	160	194	12.7155
((((((((.(....((((....))))).))))))	chr6:15468661-15468915(+)$1	1	34	68	12.7825
(((((((..(((((((......)))...))))..	chr18:2700408-2700658(+)$1	1	171	205	13.1084
(((.(((((....((((....))))..)))))))	chr11:85374474-85374730(-)$1	1	123	157	12.0468
((((((((((.....(((...)))...)))))))	chr21:22856562-22856839(+)$1	1	43	77	14.1469
((((....((((.((((....))))..))))..)	chr12:132197950-132198203(+)$1	1	142	176	11.6913
((((.(((((((...((.....))...)))))))	chr10:120450779-120451028(-)$1	1	183	217	12.4247
((((((..(((((.(((.....)))..)))))))	chr1:1254154-1254425(-)$1	1	205	239	11.4572
...(((.(((...((((....))))...))))))	chr11:43467372-43467622(+)$1	1	105	139	11.0885
(((((((.((....((((...))))...)).)))	chr4:25821416-25821681(-)$1	1	183	217	12.6440
(..(((....(((.(((.....))).)))....)	chr3:195794378-195794640(-)$1	1	211	245	12.9903
(..((((((((...(((....)))...)))....	chr20:34214165-34214414(-)$1	1	130	164	11.4012
..(((((.(((..(((((.....))..)))...)	chr1:39796769-39797021(+)$1	1	186	220	12.1593
((((((.(((....(((((...))))))))...)	chr15:51770390-51770657(-)$1	1	156	190	10.5217
(((.(((((...((((......))))..))))).	chr4:10075979-10076256(-)$1	1	107	141	12.1995
(((((.(((((((((((((...)))))))))).)	chr22:32880939-32881190(+)$1	1	25	59	12.0474
....((((.((...(((.....)))..)))))).	chr18:2729170-2729421(+)$1	1	44	78	12.4948
(((((((.(((.((((((...))))..)).))).	chrX:55046781-55047062(-)$1	1	143	177	12.9217
(..(((((((..((((......))))..))))))	chr11:74976953-74977218(-)$1	1	11	45	10.8388
))))((.(((....((((......))))))).))	chrX:44941852-44942109(+)$1	1	122	156	10.5787
((((((((.((.(.(((...)))).)).))))))	chr21:36260643-36260901(-)$1	1	2	36	11.4497
..((((((((((((((......)))))))))...	chr8:103282247-103282518(-)$1	1	134	168	11.7342
(((.(((((((((...(((...)))..)))))))	chr12:131286065-131286314(-)$1	1	182	216	13.0826
.((...(((.((..(((.....)))..)))))..	chr2:179462322-179462568(+)$1	1	126	160	14.2378
))(((.(((((...(((.(....).)))...)).	chr17:74730517-74730755(-)$1	1	150	184	10.5520
((((((...((...((((...))))..))...))	chr15:44830654-44830912(+)$1	1	140	174	13.6033
.(((...(((..(((((.....)))..))..)))	chr8:64081805-64082067(+)$1	1	15	49	13.6671
...(((((((((..(((....)))...)))))))	chr16:71956119-71956383(+)$1	1	4	38	11.6922
(....(((.(((.(((......)))))).)))..	chr1:101440257-101440503(+)$1	1	111	145	12.0231
((....((((....(((....)))....))))..	chr1:93804716-93804954(-)$1	1	39	73	10.9830
.(((..((((..(((((.....)))).)..))))	chr12:64838735-64838989(+)$1	1	54	88	11.6962
.((..((.((((.((((....))))..)))))).	chr20:43138466-43138770(-)$1	1	110	144	10.3889
.(((((((.((...(((.....)))..)))))))	chr17:48829438-48829642(+)$1	1	105	139	15.6565

#PSSM
d : 0.14	g : 0.14	e : 0.11	f : 0.09	" : 0.07	b : 0.05	= : 0.05	: : 0.05	c : 0.03	h : 0.03	i : 0.03	[ : 0.03	+ : 0.01	D : 0.01	# : 0.01	$ : 0.01	F : 0.01	! : 0.01	
g : 0.22	d : 0.12	: : 0.09	c : 0.07	f : 0.07	e : 0.07	b : 0.07	= : 0.05	i : 0.05	h : 0.03	" : 0.03	# : 0.03	! : 0.01	$ : 0.01	
g : 0.22	d : 0.14	e : 0.11	c : 0.09	: : 0.07	f : 0.05	= : 0.05	i : 0.05	h : 0.03	b : 0.03	# : 0.03	[ : 0.01	" : 0.01	! : 0.01	$ : 0.01	
g : 0.24	e : 0.14	[ : 0.09	c : 0.09	d : 0.07	f : 0.07	i : 0.07	= : 0.05	" : 0.03	h : 0.03	# : 0.03	$ : 0.01	! : 0.01	
g : 0.20	e : 0.16	d : 0.11	i : 0.09	f : 0.05	= : 0.05	" : 0.05	! : 0.05	# : 0.05	c : 0.05	h : 0.03	[ : 0.03	b : 0.01	
g : 0.18	e : 0.16	d : 0.09	i : 0.09	c : 0.07	! : 0.05	f : 0.05	= : 0.05	" : 0.05	[ : 0.05	h : 0.03	# : 0.03	b : 0.03	
g : 0.18	e : 0.14	d : 0.12	c : 0.11	[ : 0.07	" : 0.07	i : 0.07	! : 0.05	= : 0.05	f : 0.03	# : 0.03	b : 0.01	
c : 0.22	g : 0.14	d : 0.12	e : 0.09	i : 0.09	[ : 0.07	! : 0.05	= : 0.05	" : 0.05	f : 0.03	# : 0.03	
c : 0.24	[ : 0.16	d : 0.12	! : 0.07	e : 0.07	i : 0.07	= : 0.05	g : 0.05	" : 0.05	f : 0.03	b : 0.01	# : 0.01	
c : 0.24	d : 0.16	b : 0.14	i : 0.07	! : 0.05	= : 0.05	[ : 0.05	g : 0.05	# : 0.05	e : 0.03	f : 0.01	a : 0.01	" : 0.01	
b : 0.18	c : 0.18	# : 0.12	d : 0.11	" : 0.09	! : 0.05	i : 0.05	g : 0.03	[ : 0.03	e : 0.03	= : 0.03	f : 0.01	$ : 0.01	
" : 0.18	# : 0.16	c : 0.12	d : 0.09	! : 0.09	b : 0.07	[ : 0.05	i : 0.05	e : 0.03	= : 0.03	a : 0.01	f : 0.01	$ : 0.01	g : 0.01	
! : 0.18	" : 0.18	# : 0.16	d : 0.09	[ : 0.09	c : 0.05	e : 0.05	b : 0.05	a : 0.03	i : 0.03	$ : 0.01	= : 0.01	
d : 0.20	! : 0.14	[ : 0.12	c : 0.12	# : 0.12	" : 0.12	e : 0.03	b : 0.03	$ : 0.01	= : 0.01	i : 0.01	
c : 0.44	d : 0.35	e : 0.05	# : 0.03	" : 0.03	b : 0.01	$ : 0.01	= : 0.01	i : 0.01	
c : 0.49	d : 0.35	b : 0.05	e : 0.03	= : 0.01	i : 0.01	" : 0.01	
c : 0.38	d : 0.29	o : 0.18	b : 0.05	e : 0.03	l : 0.01	= : 0.01	
n : 0.25	o : 0.20	m : 0.20	d : 0.14	c : 0.07	l : 0.03	b : 0.01	e : 0.01	= : 0.01	[ : 0.01	
n : 0.27	m : 0.25	o : 0.22	l : 0.16	e : 0.01	= : 0.01	c : 0.01	a : 0.01	
m : 0.27	n : 0.27	o : 0.22	l : 0.20	b : 0.01	
m : 0.27	n : 0.27	o : 0.22	l : 0.18	b : 0.01	c : 0.01	
n : 0.27	o : 0.22	d : 0.18	c : 0.12	m : 0.07	l : 0.05	] : 0.01	e : 0.01	b : 0.01	
c : 0.49	d : 0.31	e : 0.03	b : 0.03	o : 0.03	n : 0.01	= : 0.01	i : 0.01	m : 0.01	
c : 0.48	d : 0.33	e : 0.03	b : 0.03	a : 0.03	4 : 0.01	= : 0.01	o : 0.01	i : 0.01	
c : 0.37	d : 0.35	3 : 0.09	e : 0.03	4 : 0.03	= : 0.03	] : 0.03	b : 0.01	i : 0.01	
2 : 0.33	d : 0.20	3 : 0.18	] : 0.05	4 : 0.05	e : 0.03	= : 0.03	c : 0.03	a : 0.01	b : 0.01	i : 0.01	
2 : 0.37	3 : 0.18	] : 0.09	d : 0.07	c : 0.07	4 : 0.07	e : 0.03	= : 0.03	a : 0.01	b : 0.01	i : 0.01	
b : 0.20	c : 0.20	d : 0.12	3 : 0.09	= : 0.07	i : 0.07	4 : 0.05	e : 0.05	] : 0.03	2 : 0.03	g : 0.01	a : 0.01	
c : 0.24	b : 0.22	d : 0.14	i : 0.09	= : 0.07	e : 0.07	g : 0.05	4 : 0.03	3 : 0.01	] : 0.01	2 : 0.01	
c : 0.24	d : 0.12	] : 0.09	i : 0.09	2 : 0.07	= : 0.07	e : 0.07	g : 0.07	4 : 0.05	3 : 0.05	f : 0.01	b : 0.01	
d : 0.14	c : 0.12	g : 0.11	e : 0.11	] : 0.09	3 : 0.09	i : 0.09	= : 0.07	2 : 0.05	4 : 0.05	f : 0.03	
g : 0.12	d : 0.12	e : 0.12	] : 0.09	3 : 0.09	c : 0.09	= : 0.07	i : 0.07	4 : 0.05	2 : 0.03	f : 0.03	b : 0.03	h : 0.01	
g : 0.16	d : 0.14	e : 0.11	i : 0.09	2 : 0.07	3 : 0.07	= : 0.05	4 : 0.05	c : 0.05	b : 0.05	h : 0.03	f : 0.03	] : 0.01	5 : 0.01	
g : 0.18	d : 0.12	c : 0.11	e : 0.09	i : 0.09	f : 0.07	] : 0.07	= : 0.05	h : 0.03	2 : 0.03	5 : 0.03	3 : 0.03	4 : 0.01	b : 0.01	

#score	662.7548564041351
#seq	54
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_CDS_m2_run2.txt

#BEAR
ddddddwwwwwwwwwwwwwwdddd]d	chr12:11183763-11184048(-)$1	285	14	40	22.9215
=======vvvvvvvvvvvvv======	chr12:102110910-102111220(+)$1	310	7	33	25.2433
&&&&eeeeettttttttttteeeee5	chr2:242263715-242263929(+)$1	214	49	75	24.1910
&&&&eeeeettttttttttteeeee5	chr2:242263731-242263967(+)$1	236	33	59	24.1910
"""ddddvvvvvvvvvvvvvdddd44	chr8:17105682-17105934(+)$1	252	206	232	27.3463
"""cccwwwwwwwwwwwwwwccc]ee	chr12:79978791-79979048(-)$1	257	163	189	24.7380
ffffffvvvvvvvvvvvvvffffff:	chr8:64101182-64101435(+)$1	253	0	26	22.2586

#otherMatches

#Seq PSSM
ggcuccauuuuugaagucagggagac	chr12:11183763-11184048(-)$1	285	14	40	22.9215
uauuuuaaaaauaaauCCAGUAAAAU	chr12:102110910-102111220(+)$1	310	7	33	25.2433
AUUUGAUUCAUUAACACAAAGAGUUC	chr2:242263715-242263929(+)$1	214	49	75	24.1910
AUUUGAUUCAUUAACACAAAGAGUUC	chr2:242263731-242263967(+)$1	236	33	59	24.1910
ucagcuccccacaccccuccgaguag	chr8:17105682-17105934(+)$1	252	206	232	27.3463
GAAGCCUCAGCAUGGACAUUGGCAUC	chr12:79978791-79979048(-)$1	257	163	189	24.7380
GAAACAACUUUUAAAUAAAUGUUUUA	chr8:64101182-64101435(+)$1	253	0	26	22.2586

#DB
((((((..............)))).)	chr12:11183763-11184048(-)$1	1	14	40	22.9215
(((((((.............))))))	chr12:102110910-102111220(+)$1	1	7	33	25.2433
....(((((...........))))).	chr2:242263715-242263929(+)$1	1	49	75	24.1910
....(((((...........))))).	chr2:242263731-242263967(+)$1	1	33	59	24.1910
...((((.............))))..	chr8:17105682-17105934(+)$1	1	206	232	27.3463
...(((..............))).))	chr12:79978791-79979048(-)$1	1	163	189	24.7380
((((((.............)))))).	chr8:64101182-64101435(+)$1	1	0	26	22.2586

#PSSM
& : 0.28	" : 0.28	d : 0.14	= : 0.14	f : 0.14	
& : 0.28	" : 0.28	d : 0.14	= : 0.14	f : 0.14	
& : 0.28	" : 0.28	d : 0.14	= : 0.14	f : 0.14	
d : 0.28	& : 0.28	= : 0.14	c : 0.14	f : 0.14	
d : 0.28	e : 0.28	= : 0.14	c : 0.14	f : 0.14	
d : 0.28	e : 0.28	= : 0.14	c : 0.14	f : 0.14	
w : 0.28	e : 0.28	= : 0.14	d : 0.14	v : 0.14	
v : 0.42	w : 0.28	e : 0.28	
v : 0.42	w : 0.28	e : 0.28	
v : 0.42	w : 0.28	t : 0.28	
v : 0.42	w : 0.28	t : 0.28	
v : 0.42	w : 0.28	t : 0.28	
v : 0.42	w : 0.28	t : 0.28	
v : 0.42	w : 0.28	t : 0.28	
v : 0.42	w : 0.28	t : 0.28	
v : 0.42	w : 0.28	t : 0.28	
v : 0.42	w : 0.28	t : 0.28	
v : 0.42	w : 0.28	t : 0.28	
v : 0.42	w : 0.28	t : 0.28	
w : 0.28	v : 0.28	t : 0.28	f : 0.14	
d : 0.28	e : 0.28	= : 0.14	c : 0.14	f : 0.14	
d : 0.28	e : 0.28	= : 0.14	c : 0.14	f : 0.14	
d : 0.28	e : 0.28	= : 0.14	c : 0.14	f : 0.14	
d : 0.28	e : 0.28	= : 0.14	] : 0.14	f : 0.14	
e : 0.42	] : 0.14	= : 0.14	4 : 0.14	f : 0.14	
5 : 0.28	d : 0.14	= : 0.14	4 : 0.14	e : 0.14	: : 0.14	

#score	170.89000303258572
#seq	7
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_transcript_m1_run2.txt

#BEAR
iiiiiii"""cccooooooccc333iiiiiiii	chr2:217005885-217006131(+)$1	246	160	193	20.0556
===!!bb"""ddddlllddddbb333=======	chr14:24654614-24654841(-)$1	227	98	131	13.5200
b!!==========rrrrrrrrr==========2	chr14:102473244-102473458(+)$1	214	56	89	13.7936
ccc[ccc"""cccooooooccccccccc]dddd	chr17:80014668-80014902(+)$1	234	123	156	16.0792
gggggeeeeecccooooooccc4444eeeee]g	chr16:30081246-30081450(+)$1	204	138	171	15.4877
eeebb[ccc[cccoooooocccccc]bb]eeee	chr16:30081210-30081429(+)$1	219	174	207	13.8709
iiiiiiiii!!bbnnnnnbb4444iiiiiiiii	chr3:128987699-128987916(+)$1	217	134	167	13.9697
ggggggg####cccmmmmccc4444ggggggg0	chr7:2411325-2411584(+)$1	259	76	109	13.2562
iiiiiiiii!!aooooooa22iiiiiiiiifff	chr5:43298787-43299030(-)$1	243	80	113	15.3785
""iiiiiiiiiddddllldddd]iiiiiiiii3	chr19:39306824-39307054(-)$1	230	170	203	13.1002
[ddddbb[ccc[aooooooa]cccbb]dddd]b	chr9:80921129-80921350(+)$1	221	32	65	12.6582
ee!!ggggggg[aooooooa]ggggggg22eee	chr20:33603714-33603978(-)$1	264	50	83	14.7820
d[bb"""ddddbboooooobb4444dddd333b	chr11:62491715-62491999(-)$1	284	98	131	14.2619
###===========nnnnn===========22b	chr11:18425233-18425454(+)$1	221	113	146	13.9611
=====[a"""cccooooooccc333a=======	chr17:45747079-45747332(+)$1	253	173	206	20.4340
ggggggg####bboooooobb22ggggggg]cc	chr19:34887385-34887609(+)$1	224	138	171	16.7619
f[eeeee"""cccooooooccceeeee333fff	chr3:49405809-49406080(-)$1	271	214	247	15.9037
cc!!ccc"""cccooooooccc333ccc22ccc	chr2:220435982-220436256(-)$1	274	83	116	18.2660
e!!a!!a[ccc!!aooooooa22ccc]a22a22	chr19:2434279-2434586(-)$1	307	140	173	14.5212
b[eeeee!!ddddoooooodddd]eeeee]bb3	chr11:62297603-62297863(-)$1	260	179	212	13.6964
=bb[dddd"""bboooooobb22dddd]bb]==	chr7:42964237-42964497(-)$1	260	195	228	14.5832
cc[==========oooooo==========]ccc	chr14:77930861-77931113(+)$1	252	169	202	17.7558
ggg[dddd!!cccooooooccc333dddd]ggg	chr9:35712743-35713024(-)$1	281	118	151	17.3066
###eeeee"""bboooooobb333eeeee333d	chr5:154172130-154172445(+)$1	315	255	288	16.2564
bbccc####ddddooooooddddccc]bb]eee	chr6:31619340-31619601(-)$1	261	209	242	13.8111
!!==========rrrrrrrrr==========]b	chr3:58106930-58107149(+)$1	219	25	58	13.9528
======!!dddd!!aooooooa22dddd=====	chrX:70444748-70445093(+)$1	345	107	140	14.6059
[==========[abblllbb]a]==========	chr12:6861387-6861628(-)$1	241	142	175	14.0002
:bb[dddda[cccooooooccc]a]dddd]bbc	chr14:24769760-24770032(+)$1	272	1	34	13.8341
b!!dddd####bboooooobb22dddd4444bb	chr16:30087540-30087875(+)$1	335	221	254	15.0158
!bb"""gggggggooooooggggggg4444bb]	chr19:39212082-39212306(+)$1	224	43	76	14.1756
fffff!!bb[cccooooooccc]bb22ffffff	chr16:29814745-29815032(+)$1	287	171	204	13.2797
FFeeeee"""cccooooooccc333eeeeeeee	chr12:111180356-111180627(-)$1	271	224	257	16.0435
========####cccmmmmccc333========	chr10:71977467-71977687(-)$1	220	91	124	15.6594
iiiiiiii!!cccooooooccc333iiiiiiii	chr14:24568279-24568525(+)$1	246	212	245	19.5204
iii!!ccc[acccnnnnnccc]a22ccc]iiii	chr3:184025577-184025892(+)$1	315	195	228	13.0870
==========ddddmmmmdddd]==========	chr7:26232769-26233011(-)$1	242	146	179	13.5634
####dddd!!cccooooooccc22dddd22eee	chr17:1583919-1584157(-)$1	238	63	96	15.8477
da[ccc"""ddddoooooodddd333ccc]a22	chr5:151183501-151183792(+)$1	291	89	122	15.5207
eeee####eeeeeooooooeeeee4444eeeee	chr4:2877536-2877824(+)$1	288	64	97	12.7451
a[===========oooooo===========]a]	chr21:44836207-44836436(-)$1	229	163	196	18.1805
=========[ddddllldddd4444========	chrX:41047201-41047471(+)$1	270	231	264	14.6838
c============oooooo============::	chr2:230670373-230670624(-)$1	251	51	84	16.3719
eeeee[gggggggooooooggggggg]eeeee3	chr1:110561607-110561840(+)$1	233	24	57	13.8953
ggg[bb####cccooooooccc22bbggggggg	chr17:7400574-7400797(+)$1	223	159	192	17.0722
cc!!ccc[ccc[aooooooa]ccc]ccc]ccc2	chr2:232321241-232321451(-)$1	210	103	136	15.2703
gggggg####cccooooooccc]gggggggfff	chr1:160267032-160267300(-)$1	268	32	65	17.3859
bb!!dddd"""bboooooobb22dddd]bb22b	chr2:86258446-86258726(-)$1	280	72	105	13.9075
======$$$$$ddddllldddd22=========	chr3:53269002-53269289(-)$1	287	6	39	14.0375
ggggggg[a!!bboooooobb22a]gggggggc	chr1:110128801-110129066(+)$1	265	123	156	16.5576

#otherMatches

#Seq PSSM
AGAGAAGAAGGAUGAACAAGUCAUAUUUCUUUU	chr2:217005885-217006131(+)$1	246	160	193	20.0556
CAAGGGCCUGGAGGACCCCUCGCAAGUUGUACG	chr14:24654614-24654841(-)$1	227	98	131	13.5200
GUUAGGUAAUGGACUCAAGCACUCUGUUGCUUU	chr14:102473244-102473458(+)$1	214	56	89	13.7936
GCCGCGCCAAGGCCAUGAUGCUGCGGGCAGCUG	chr17:80014668-80014902(+)$1	234	123	156	16.0792
GUGGAUGGGACUCGGAGAAGAGCCCUUCUCACU	chr16:30081246-30081450(+)$1	204	138	171	15.4877
GUGGAUGGGACUCGGAGAAGAGCCCUUCUCACU	chr16:30081210-30081429(+)$1	219	174	207	13.8709
AUCUUCCAGGGUGAGUCACAGUGGUUGGGGGAU	chr3:128987699-128987916(+)$1	217	134	167	13.9697
UUUUAAACAGGGUGUUGUCACAAAUUUUGAAAU	chr7:2411325-2411584(+)$1	259	76	109	13.2562
GAUGGUGUAGAUGCUGGAAAGUAUACCAUUGGC	chr5:43298787-43299030(-)$1	243	80	113	15.3785
CAGGCCUGGAGGGUUGGAGGCCUCUCCGGGUCC	chr19:39306824-39307054(-)$1	230	170	203	13.1002
GACUCCCAUCUAUGUAAGGAAAGAGGAGAGUGA	chr9:80921129-80921350(+)$1	221	32	65	12.6582
UGCAGAGUUCAAGCUGAUCCCUGGACUUAAUAA	chr20:33603714-33603978(-)$1	264	50	83	14.7820
UAGGAGAUGACCAGGAUAGUGAAAAGUCAAAAC	chr11:62491715-62491999(-)$1	284	98	131	14.2619
GGUGGUUGAGAGGUAAUAAAUCUUUCAAUUUGG	chr11:18425233-18425454(+)$1	221	113	146	13.9611
UGGUGAGAAAAGGAGCUUGCCUGCGCCACUGGC	chr17:45747079-45747332(+)$1	253	173	206	20.4340
CAGACCCAGCACCCCAUACGGAAGGGUCUGCAU	chr19:34887385-34887609(+)$1	224	138	171	16.7619
GUUUAGGUGAGUGGCCCUGCACCCUGAUAUUUG	chr3:49405809-49406080(-)$1	271	214	247	15.9037
GCUUCGGGCCCGGGAAUCGCCGCCGCCGCCGCC	chr2:220435982-220436256(-)$1	274	83	116	18.2660
GGAAGAUGCUGGACGCCAAGGAGCAGGAGAUGA	chr19:2434279-2434586(-)$1	307	140	173	14.5212
UGGAUGUGAAGCUGCCCAAAGCUGACGUUGAUG	chr11:62297603-62297863(-)$1	260	179	212	13.6964
UCUGUGAUGCAAGAAUAUACUCAGUCAGGGUAA	chr7:42964237-42964497(-)$1	260	195	228	14.5832
UAAAUGGUUUUCCUGGGGUGGGAGACUGUCUGC	chr14:77930861-77931113(+)$1	252	169	202	17.7558
AGCAGCCUCAUUGAGGAGGCGAAAAAGGCAGCU	chr9:35712743-35713024(-)$1	281	118	151	17.3066
AGGUGGCAGGGUAGAACUGUGAAAUGUCAGGAC	chr5:154172130-154172445(+)$1	315	255	288	16.2564
UCCUCGUUUAGGCCCCUUAGCCUGAGAGAUGAG	chr6:31619340-31619601(-)$1	261	209	242	13.8111
UUUCUUUUCCAGGGGUGGAAGUUGGGAAGGAUC	chr3:58106930-58107149(+)$1	219	25	58	13.9528
CCAGCACUAGUAAAGGAGGAAUAGUGCUUGCUG	chrX:70444748-70445093(+)$1	345	107	140	14.6059
GAGGGACGUGGAGCCUGAGGAUCCCAUGUUCCU	chr12:6861387-6861628(-)$1	241	142	175	14.0002
CUUGCGCACUGUGGCCUGUCACCGAUGCGGGGU	chr14:24769760-24770032(+)$1	272	1	34	13.8341
GAGAGCGAAGUCAAGGCCCUGUGCGCUAAGGCC	chr16:30087540-30087875(+)$1	335	221	254	15.0158
CCUGCCCCACAGCUGCCGUGCUGUGGUCUAAGC	chr19:39212082-39212306(+)$1	224	43	76	14.1756
CCCCUACAGCUAAGUAAGUUUGACUCCAGGGGC	chr16:29814745-29815032(+)$1	287	171	204	13.2797
GCCCCGGGGGCUCGAGGGAGGGGAGUUGGGAGG	chr12:111180356-111180627(-)$1	271	224	257	16.0435
AUAUCUGGAACUAUGGUGCCAUCCCUCAGGUAU	chr10:71977467-71977687(-)$1	220	91	124	15.6594
GGUGGGGCCUGGCCAGUCUGCCUCAGCCUCACC	chr14:24568279-24568525(+)$1	246	212	245	19.5204
UGUGCUUGUCUCUUUCCUGGAUGUUCGAAACAG	chr3:184025577-184025892(+)$1	315	195	228	13.0870
UUAUAAAAAUUGAGGUUAUUCAGAUUUUUGUGA	chr7:26232769-26233011(-)$1	242	146	179	13.5634
ACUGAGGAUCCUGACUUGCCAGCUUUCUACUUU	chr17:1583919-1584157(-)$1	238	63	96	15.8477
GUGGAGGCAUGGUGCAGAAACCAGGAUUUGGAG	chr5:151183501-151183792(+)$1	291	89	122	15.5207
UUCUUUUAUUUUGAUUCUGUAGGAACCUAGAAA	chr4:2877536-2877824(+)$1	288	64	97	12.7451
AAACGAGCGGGCGCAUUGUUGUCCGCUugugug	chr21:44836207-44836436(-)$1	229	163	196	18.1805
UGAUUUUUAUUAGCUUUGCUAUUUUUAAAAAUU	chrX:41047201-41047471(+)$1	270	231	264	14.6838
GAUAAGCUUGUCCACUCUGGGACGAGUUUAUAC	chr2:230670373-230670624(-)$1	251	51	84	16.3719
UGAGACAGAGCUCAUCCCAGGGCUCUCUCUUAC	chr1:110561607-110561840(+)$1	233	24	57	13.8953
UGAGCAGAACGGCGCAGCGGCCCAUGUCAUUGC	chr17:7400574-7400797(+)$1	223	159	192	17.0722
AGAAGCCGUAAGUUCACCUGGUUAGGGUGCUGU	chr2:232321241-232321451(-)$1	210	103	136	15.2703
AAGAGAAAAGACCUAACUUGGUGUCUCUUACUU	chr1:160267032-160267300(-)$1	268	32	65	17.3859
CCAAGAGCAAGAUGAAGAGGUGGGCUUAGGCAC	chr2:86258446-86258726(-)$1	280	72	105	13.9075
UACCCAGAAUGCAGGCUCCUUGGAUGGGUGGGG	chr3:53269002-53269289(-)$1	287	6	39	14.0375
CCUCAGUGAUUAUGACCUUGUUCUGGCUGAGGA	chr1:110128801-110129066(+)$1	265	123	156	16.5576

#DB
(((((((...(((......)))...))))))))	chr2:217005885-217006131(+)$1	1	160	193	20.0556
(((..((...((((...))))))...)))))))	chr14:24654614-24654841(-)$1	1	98	131	13.5200
(..((((((((((.........)))))))))).	chr14:102473244-102473458(+)$1	1	56	89	13.7936
(((.(((...(((......))))))))).))))	chr17:80014668-80014902(+)$1	1	123	156	16.0792
(((((((((((((......)))....))))).)	chr16:30081246-30081450(+)$1	1	138	171	15.4877
(((((.(((.(((......)))))).)).))))	chr16:30081210-30081429(+)$1	1	174	207	13.8709
(((((((((..((.....))....)))))))))	chr3:128987699-128987916(+)$1	1	134	167	13.9697
(((((((....(((....)))....))))))).	chr7:2411325-2411584(+)$1	1	76	109	13.2562
(((((((((..(......)..)))))))))(((	chr5:43298787-43299030(-)$1	1	80	113	15.3785
..(((((((((((((...)))).))))))))).	chr19:39306824-39307054(-)$1	1	170	203	13.1002
.((((((.(((.(......).))))).)))).)	chr9:80921129-80921350(+)$1	1	32	65	12.6582
((..(((((((.(......).)))))))..)))	chr20:33603714-33603978(-)$1	1	50	83	14.7820
(.((...((((((......))....))))...)	chr11:62491715-62491999(-)$1	1	98	131	14.2619
...(((((((((((.....)))))))))))..)	chr11:18425233-18425454(+)$1	1	113	146	13.9611
(((((.(...(((......)))...))))))))	chr17:45747079-45747332(+)$1	1	173	206	20.4340
(((((((....((......))..))))))).))	chr19:34887385-34887609(+)$1	1	138	171	16.7619
(.(((((...(((......))))))))...)))	chr3:49405809-49406080(-)$1	1	214	247	15.9037
((..(((...(((......)))...)))..)))	chr2:220435982-220436256(-)$1	1	83	116	18.2660
(..(..(.(((..(......)..))).)..)..	chr19:2434279-2434586(-)$1	1	140	173	14.5212
(.(((((..((((......)))).))))).)).	chr11:62297603-62297863(-)$1	1	179	212	13.6964
(((.((((...((......))..)))).)).))	chr7:42964237-42964497(-)$1	1	195	228	14.5832
((.((((((((((......)))))))))).)))	chr14:77930861-77931113(+)$1	1	169	202	17.7558
(((.((((..(((......)))...)))).)))	chr9:35712743-35713024(-)$1	1	118	151	17.3066
...(((((...((......))...)))))...)	chr5:154172130-154172445(+)$1	1	255	288	16.2564
(((((....((((......))))))).)).)))	chr6:31619340-31619601(-)$1	1	209	242	13.8111
..((((((((((.........)))))))))).)	chr3:58106930-58107149(+)$1	1	25	58	13.9528
((((((..((((..(......)..)))))))))	chrX:70444748-70445093(+)$1	1	107	140	14.6059
.((((((((((.(((...)).).))))))))))	chr12:6861387-6861628(-)$1	1	142	175	14.0002
.((.(((((.(((......))).).)))).))(	chr14:24769760-24770032(+)$1	1	1	34	13.8341
(..((((....((......))..))))....))	chr16:30087540-30087875(+)$1	1	221	254	15.0158
.((...(((((((......)))))))....)).	chr19:39212082-39212306(+)$1	1	43	76	14.1756
(((((..((.(((......))).))..))))))	chr16:29814745-29815032(+)$1	1	171	204	13.2797
))(((((...(((......)))...)))))(((	chr12:111180356-111180627(-)$1	1	224	257	16.0435
((((((((....(((....)))...))))))))	chr10:71977467-71977687(-)$1	1	91	124	15.6594
((((((((..(((......)))...))))))))	chr14:24568279-24568525(+)$1	1	212	245	19.5204
(((..(((.((((.....))).)..))).))))	chr3:184025577-184025892(+)$1	1	195	228	13.0870
((((((((((((((....)))).))))))))))	chr7:26232769-26233011(-)$1	1	146	179	13.5634
....((((..(((......)))..))))..)))	chr17:1583919-1584157(-)$1	1	63	96	15.8477
((.(((...((((......))))...))).)..	chr5:151183501-151183792(+)$1	1	89	122	15.5207
((((....(((((......)))))....)))))	chr4:2877536-2877824(+)$1	1	64	97	12.7451
(.(((((((((((......))))))))))).).	chr21:44836207-44836436(-)$1	1	163	196	18.1805
(((((((((.((((...))))....))))))))	chrX:41047201-41047471(+)$1	1	231	264	14.6838
)((((((((((((......))))))))))))..	chr2:230670373-230670624(-)$1	1	51	84	16.3719
(((((.(((((((......))))))).))))).	chr1:110561607-110561840(+)$1	1	24	57	13.8953
(((.((....(((......)))..)))))))))	chr17:7400574-7400797(+)$1	1	159	192	17.0722
((..(((.(((.(......).))).))).))).	chr2:232321241-232321451(-)$1	1	103	136	15.2703
((((((....(((......))).)))))))(((	chr1:160267032-160267300(-)$1	1	32	65	17.3859
((..((((...((......))..)))).))..)	chr2:86258446-86258726(-)$1	1	72	105	13.9075
((((((.....((((...))))..)))))))))	chr3:53269002-53269289(-)$1	1	6	39	14.0375
(((((((.(..((......))..).))))))))	chr1:110128801-110129066(+)$1	1	123	156	16.5576

#PSSM
= : 0.16	g : 0.14	i : 0.10	b : 0.10	c : 0.10	e : 0.10	# : 0.06	[ : 0.04	d : 0.04	f : 0.04	! : 0.04	" : 0.02	: : 0.02	F : 0.02	a : 0.02	
= : 0.18	g : 0.14	i : 0.10	b : 0.10	! : 0.08	c : 0.08	e : 0.08	[ : 0.08	# : 0.06	" : 0.02	d : 0.02	f : 0.02	F : 0.02	a : 0.02	
= : 0.21	! : 0.14	g : 0.14	i : 0.12	e : 0.12	b : 0.08	# : 0.06	c : 0.04	[ : 0.04	d : 0.02	f : 0.02	
= : 0.25	! : 0.12	e : 0.12	i : 0.10	[ : 0.10	g : 0.10	b : 0.04	d : 0.04	c : 0.04	a : 0.02	" : 0.02	f : 0.02	# : 0.02	
= : 0.25	d : 0.14	g : 0.12	i : 0.10	c : 0.10	e : 0.10	! : 0.06	b : 0.04	" : 0.04	f : 0.02	# : 0.02	
= : 0.23	d : 0.12	i : 0.10	c : 0.10	e : 0.10	g : 0.10	b : 0.06	[ : 0.06	" : 0.04	! : 0.04	# : 0.04	
= : 0.19	g : 0.12	d : 0.12	i : 0.10	c : 0.10	e : 0.10	# : 0.08	b : 0.04	" : 0.04	a : 0.04	! : 0.04	$ : 0.02	
= : 0.19	" : 0.16	# : 0.14	d : 0.12	i : 0.08	[ : 0.08	g : 0.06	e : 0.04	c : 0.04	! : 0.04	b : 0.02	$ : 0.02	
" : 0.21	= : 0.18	# : 0.14	c : 0.08	! : 0.08	i : 0.06	g : 0.06	e : 0.04	d : 0.04	a : 0.04	b : 0.02	[ : 0.02	$ : 0.02	
" : 0.19	= : 0.16	! : 0.12	# : 0.12	d : 0.10	[ : 0.08	c : 0.06	g : 0.06	e : 0.04	i : 0.02	a : 0.02	$ : 0.02	
c : 0.38	d : 0.16	= : 0.14	# : 0.08	! : 0.06	g : 0.06	" : 0.06	i : 0.02	e : 0.02	$ : 0.02	
c : 0.34	d : 0.18	b : 0.16	= : 0.12	[ : 0.08	g : 0.04	a : 0.02	! : 0.02	# : 0.02	e : 0.02	
c : 0.36	d : 0.16	b : 0.16	= : 0.10	a : 0.08	! : 0.04	g : 0.04	o : 0.02	r : 0.02	e : 0.02	
o : 0.70	d : 0.10	r : 0.04	n : 0.04	c : 0.04	= : 0.02	a : 0.02	! : 0.02	b : 0.02	
o : 0.72	n : 0.06	l : 0.04	r : 0.04	m : 0.04	d : 0.04	a : 0.02	b : 0.02	c : 0.02	
o : 0.74	l : 0.10	n : 0.06	m : 0.06	r : 0.04	
o : 0.74	l : 0.10	n : 0.06	m : 0.06	r : 0.04	
o : 0.74	n : 0.06	m : 0.06	l : 0.06	d : 0.04	r : 0.04	
o : 0.72	d : 0.10	r : 0.04	b : 0.04	c : 0.04	a : 0.02	n : 0.02	m : 0.02	
c : 0.36	b : 0.18	d : 0.16	= : 0.08	a : 0.06	r : 0.04	o : 0.04	g : 0.04	2 : 0.02	e : 0.02	
c : 0.36	d : 0.16	b : 0.14	] : 0.08	= : 0.08	r : 0.04	g : 0.04	4 : 0.02	2 : 0.02	a : 0.02	o : 0.02	e : 0.02	
c : 0.36	d : 0.12	2 : 0.12	= : 0.10	4 : 0.08	g : 0.06	a : 0.04	b : 0.02	r : 0.02	i : 0.02	3 : 0.02	] : 0.02	e : 0.02	
2 : 0.19	3 : 0.16	= : 0.12	] : 0.12	4 : 0.10	c : 0.08	g : 0.06	d : 0.06	e : 0.04	b : 0.02	i : 0.02	a : 0.02	
3 : 0.19	= : 0.16	c : 0.12	4 : 0.10	g : 0.10	2 : 0.10	d : 0.06	i : 0.04	e : 0.04	a : 0.04	] : 0.02	b : 0.02	
3 : 0.18	= : 0.18	4 : 0.10	g : 0.10	d : 0.10	c : 0.08	i : 0.06	b : 0.06	e : 0.06	] : 0.06	2 : 0.02	
= : 0.21	d : 0.16	g : 0.14	c : 0.12	i : 0.10	e : 0.08	3 : 0.04	4 : 0.04	b : 0.04	] : 0.02	a : 0.02	2 : 0.02	
= : 0.25	d : 0.16	g : 0.12	i : 0.10	c : 0.10	e : 0.10	] : 0.08	4 : 0.04	b : 0.02	2 : 0.02	
= : 0.25	g : 0.12	d : 0.12	i : 0.10	c : 0.10	e : 0.10	4 : 0.06	b : 0.04	] : 0.04	3 : 0.02	a : 0.02	f : 0.02	
= : 0.27	e : 0.12	i : 0.10	g : 0.10	] : 0.08	d : 0.08	2 : 0.08	b : 0.06	4 : 0.04	3 : 0.02	f : 0.02	c : 0.02	
= : 0.25	i : 0.12	] : 0.12	e : 0.10	g : 0.10	2 : 0.08	3 : 0.06	d : 0.04	b : 0.04	4 : 0.04	f : 0.02	c : 0.02	
= : 0.21	e : 0.16	i : 0.10	g : 0.08	f : 0.08	] : 0.06	c : 0.06	b : 0.06	d : 0.04	3 : 0.04	2 : 0.04	a : 0.04	4 : 0.02	
= : 0.19	e : 0.14	i : 0.10	g : 0.08	f : 0.08	2 : 0.08	c : 0.08	b : 0.08	] : 0.06	3 : 0.04	d : 0.02	a : 0.02	: : 0.02	
= : 0.18	e : 0.12	b : 0.12	c : 0.10	i : 0.08	2 : 0.08	f : 0.08	g : 0.06	3 : 0.06	d : 0.04	] : 0.04	0 : 0.02	: : 0.02	

#score	761.6873439638521
#seq	50
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_UTR_m3_run1.txt

#BEAR
!!eeeeerrrrrrrrreeeee]ccc	chr16:29677284-29677572(+)$1	288	217	242	11.6504
a[ccc!!arrrrrrrrra22ccca]	chr16:23701454-23701690(+)$1	236	110	135	12.5872
cc!!ddddssssssssssdddd22c	chr1:206906145-206906392(+)$1	247	153	178	13.0514
d!!ffffffrrrrrrrrrffffff]	chr22:22049865-22050118(+)$1	253	160	185	11.6502
hhhhhhhttttttttttthhhhhhh	chr7:77166497-77166756(+)$1	259	158	183	17.1606
!!ccccccssssssssssccc]ccc	chr9:131398221-131398481(-)$1	260	179	204	14.7134
dd[a[bbuuuuuuuuuuuubb]a]d	chr1:155658335-155658594(-)$1	259	16	41	18.7325
"ccc!!cccrrrrrrrrrccc]ccc	chr1:6245461-6245687(-)$1	226	121	146	12.6656
!bb!!a[assssssssssa]a]bb2	chr1:87380287-87380651(+)$1	364	132	157	13.8758
b[eeeeettttttttttteeeee]b	chr21:35469534-35469786(+)$1	252	146	171	18.8730
$$$ddddvvvvvvvvvvvvvdddd6	chr2:71653837-71654099(+)$1	262	45	70	17.7254
[cccccctttttttttttccc]ccc	chr3:195635555-195635812(-)$1	257	111	136	19.7640
bb!!awwwwwwwwwwwwwwa22bbH	chr8:101964387-101964694(-)$1	307	123	148	17.3685
hhhhhhhttttttttttthhhhhhh	chr3:23959237-23959462(+)$1	225	1	26	17.1606
gggggga^^^^^^^^^^^^^^^^^^	chr11:62334186-62334393(-)$1	207	28	53	12.1983
=======ttttttttttt=======	chr6:44081132-44081397(-)$1	265	93	118	20.0600
:ffffffuuuuuuuuuuuuffffff	chr6:160204917-160205188(-)$1	271	55	80	18.2771
bb[bbvvvvvvvvvvvvvbb]bb:H	chr11:124506293-124506539(+)$1	246	21	46	15.7996
gggggggwwwwwwwwwwwwwwgggg	chr1:235273956-235274203(-)$1	247	159	184	19.4218
ffffffvvvvvvvvvvvvvffffff	chr1:149857118-149857356(-)$1	238	165	190	19.0791
""eeeeesssssssssseeeee22i	chr12:98994927-98995159(+)$1	232	162	187	13.2861
cccccbbtttttttttttbb]cccd	chr1:19401030-19401274(-)$1	244	169	194	18.6627
bb!!eeeeerrrrrrrrreeeee]b	chr19:48983004-48983259(+)$1	255	134	159	11.3162
[ddddvvvvvvvvvvvvvdddd333	chr8:91636275-91636537(-)$1	262	226	251	18.2040
ceeeee[assssssssssaeeeeeJ	chr17:27047467-27047734(+)$1	267	179	204	13.1845
$$eeeeevvvvvvvvvvvvveeeee	chr1:10479966-10480214(+)$1	248	196	221	19.0352
::dddduuuuuuuuuuuuddddeee	chr10:73576684-73576929(-)$1	245	85	110	16.2028
ffffffvvvvvvvvvvvvvffffff	chr3:9519600-9519847(+)$1	247	163	188	19.0791
eeeee[ayyyyyyyyyyyyyyyya]	chr6:111136358-111136629(-)$1	271	67	92	15.3579
ggggggguuuuuuuuuuuugggggg	chr7:112090961-112091219(+)$1	258	47	72	20.1917
GGeeeeevvvvvvvvvvvvveeeee	chr19:58367296-58367560(+)$1	264	75	100	18.3260
eeeeewwwwwwwwwwwwwweeeee:	chr15:66786570-66786885(-)$1	315	0	25	17.7272
g[ddddbbssssssssssbb]dddd	chr17:76116537-76116821(-)$1	284	241	266	12.9025
c!!ffffffrrrrrrrrrffffffc	chr17:76122910-76123196(-)$1	286	39	64	11.7989
gggggggrrrrrrrrrgggggggee	chr1:27106041-27106263(+)$1	222	97	122	11.3720
======bbssssssssssbb]====	chr16:88718430-88718690(-)$1	260	108	133	14.2227
ffff!!attttttttttta]fffff	chr14:23791034-23791279(+)$1	245	137	162	19.3387
iiiiiiitttttttttttiiiiiii	chr10:73576084-73576332(-)$1	248	195	220	19.6400
ffffff[bbrrrrrrrrrbbfffff	chr3:121435665-121435913(-)$1	248	184	209	11.2151
===[cccvvvvvvvvvvvvvccc]=	chr2:97525527-97525828(-)$1	301	208	233	20.1225
$$eeeeesssssssssseeeee444	chr11:5275551-5275802(-)$1	251	93	118	13.0678
dddddddwwwwwwwwwwwwwwdddd	chr1:228336383-228336642(+)$1	259	198	223	17.5904
bb[a[a[arrrrrrrrra]a]a]bb	chr6:34664385-34664665(-)$1	280	106	131	12.2686
fffff[cccrrrrrrrrrccc22ff	chr11:119177370-119177636(+)$1	266	41	66	11.7132
eeee[bbuuuuuuuuuuuubbeeee	chr1:21069250-21069481(-)$1	231	33	58	18.5907
dd!!cccuuuuuuuuuuuucccddd	chr16:30081494-30081709(+)$1	215	54	79	19.3586
gggggggvvvvvvvvvvvvvggggg	chr1:52882283-52882532(+)$1	249	167	192	20.1060
ggggggguuuuuuuuuuuugggggg	chr9:139729816-139730072(+)$1	256	197	222	20.1917
iiiiiwwwwwwwwwwwwwwiiiiii	chr6:31797494-31797751(+)$1	257	187	212	19.4331
dd!!cccuuuuuuuuuuuucccddd	chr16:30081483-30081694(+)$1	211	65	90	19.3586
[fffffftttttttttttffffff]	chr6:76311783-76312086(+)$1	303	152	177	18.9509
gggg[ddddrrrrrrrrrddddggg	chr17:38286190-38286478(+)$1	288	41	66	11.6401
c[cccwwwwwwwwwwwwwwccc]cc	chr12:56498355-56498640(+)$1	285	212	237	19.2569
ccgggggggrrrrrrrrrggggggg	chr12:49666689-49666938(+)$1	249	23	48	11.9827

#otherMatches

#Seq PSSM
UAGCAGAAAAUCUAACUCUGUCUGU	chr16:29677284-29677572(+)$1	288	217	242	11.6504
GUGGGUUCUACAGCCUUGUCCCCCU	chr16:23701454-23701690(+)$1	236	110	135	12.5872
CAUUUUGCAAUUUUAUCAGUAAUUU	chr1:206906145-206906392(+)$1	247	153	178	13.0514
CAAGGCCUGCCCUACACCCAGGCUG	chr22:22049865-22050118(+)$1	253	160	185	11.6502
CUCCUGGAAGUUGUGGUGUCGGGAG	chr7:77166497-77166756(+)$1	259	158	183	17.1606
AAGCCGUCAGUGGUAGGGGGCAGGC	chr9:131398221-131398481(-)$1	260	179	204	14.7134
ACGCGCGAGGAGUGUAGGGUGGGGG	chr1:155658335-155658594(-)$1	259	16	41	18.7325
UGGCUCCCAUUAAACAUUUGGUGCU	chr1:6245461-6245687(-)$1	226	121	146	12.6656
ACUGAGGCAGUAGAGGGAGGCGAGA	chr1:87380287-87380651(+)$1	364	132	157	13.8758
UUAAGACAAUACUGACUGGUCUUUG	chr21:35469534-35469786(+)$1	252	146	171	18.8730
AGAACUAAAUAUGGAAGAAAUGGUA	chr2:71653837-71654099(+)$1	262	45	70	17.7254
GCUGCCCGGGGUGCAGGAGGGACAG	chr3:195635555-195635812(-)$1	257	111	136	19.7640
GGGAGGAAAAGGAAAAAAGCAGCCU	chr8:101964387-101964694(-)$1	307	123	148	17.3685
CCGGCGGUUUCCUUGUUUUUGUUGG	chr3:23959237-23959462(+)$1	225	1	26	17.1606
CUGCUCCUGAGGAGGAGAUGGAUGA	chr11:62334186-62334393(-)$1	207	28	53	12.1983
CUGAGCCCUUGCUUUUCUGGUUUGG	chr6:44081132-44081397(-)$1	265	93	118	20.0600
AGACGUAUUAACUUAAUCUUAUGUU	chr6:160204917-160205188(-)$1	271	55	80	18.2771
GAGAGAUUCAGUAACCACCUGUCAG	chr11:124506293-124506539(+)$1	246	21	46	15.7996
UGAUUGACUUACAAACUCUUCUUAA	chr1:235273956-235274203(-)$1	247	159	184	19.4218
UCUGCGCCUUUUUCUAAUUUGUAGA	chr1:149857118-149857356(-)$1	238	165	190	19.0791
AACAACAGUUUUGGAUAUGUUGCAU	chr12:98994927-98995159(+)$1	232	162	187	13.2861
AGGGCCUGUACAUACCUAGGAGCCA	chr1:19401030-19401274(-)$1	244	169	194	18.6627
GGGAUGUCCUGAAGGGCUGGGCAGC	chr19:48983004-48983259(+)$1	255	134	159	11.3162
AGUGCAAAUACUUUGAGAGCACCUG	chr8:91636275-91636537(-)$1	262	226	251	18.2040
UGGCCCACUGCAGUUCUUGGGGCCG	chr17:27047467-27047734(+)$1	267	179	204	13.1845
CCCUUUUUCCUUUACUCAAUAAAAG	chr1:10479966-10480214(+)$1	248	196	221	19.0352
GAGCCCUGACAUGUGCUUGGGCACU	chr10:73576684-73576929(-)$1	245	85	110	16.2028
ACAUUUGAACUUUCACAAGAGAUGU	chr3:9519600-9519847(+)$1	247	163	188	19.0791
CCGUCGCggaggaggaggaggaaga	chr6:111136358-111136629(-)$1	271	67	92	15.3579
UCGCGCGAUUUAGAUCUGGCGUGCG	chr7:112090961-112091219(+)$1	258	47	72	20.1917
GACCUUGGGAGGAGGAUGGGCAAGG	chr19:58367296-58367560(+)$1	264	75	100	18.3260
GGUGCAUGUAGACAAUGAAGCAUCA	chr15:66786570-66786885(-)$1	315	0	25	17.7272
UUAGAUUGGAAAGGAAAACAGGUUU	chr17:76116537-76116821(-)$1	284	241	266	12.9025
GCAUGAGGCUUAUUCGGUGCCUCAC	chr17:76122910-76123196(-)$1	286	39	64	11.7989
CUCGGUCUAGCACCUUGACCGAGGA	chr1:27106041-27106263(+)$1	222	97	122	11.3720
GUCCCUCCAGCGGACCAGGGAAGGG	chr16:88718430-88718690(-)$1	260	108	133	14.2227
GGUCAGCGAUCACUACAAGGGGCCC	chr14:23791034-23791279(+)$1	245	137	162	19.3387
UGAAGUUGCUAUUAAAUGGACUUCG	chr10:73576084-73576332(-)$1	248	195	220	19.6400
GAAGACCUCUCAUAUUUUGAGUCUU	chr3:121435665-121435913(-)$1	248	184	209	11.2151
GUGGGCCUGCUGUGGACAAUGGCAU	chr2:97525527-97525828(-)$1	301	208	233	20.1225
UUGACAGCUUUGGCAACCUGUCCUC	chr11:5275551-5275802(-)$1	251	93	118	13.0678
CCUGUCCCUAUCUCUCACUCUGGAC	chr1:228336383-228336642(+)$1	259	198	223	17.5904
gAGUGAGUGAGUGGCAGAGUGAGUU	chr6:34664385-34664665(-)$1	280	106	131	12.2686
GGGUGAGUGAGCCUGCAACGCAAUG	chr11:119177370-119177636(+)$1	266	41	66	11.7132
GUACAUCUUCUGGCCCCUUGAGUAC	chr1:21069250-21069481(-)$1	231	33	58	18.5907
GGCUGCCCCCAACACUCCAGGCCCU	chr16:30081494-30081709(+)$1	215	54	79	19.3586
AUAAGAAUAUUUUAGUUUUUUUCUU	chr1:52882283-52882532(+)$1	249	167	192	20.1060
GGGCUUCUGUGGUUCAAGUGGGGCC	chr9:139729816-139730072(+)$1	256	197	222	20.1917
UUGAGGUGGACUGUUGGGACUCAAG	chr6:31797494-31797751(+)$1	257	187	212	19.4331
GGCUGCCCCCAACACUCCAGGCCCU	chr16:30081483-30081694(+)$1	211	65	90	19.3586
GUGGGCCGAGAGGAACCGGGCCCGG	chr6:76311783-76312086(+)$1	303	152	177	18.9509
ACGACUGUUCCUGCAAUUGAUAUUG	chr17:38286190-38286478(+)$1	288	41	66	11.6401
UGGUCGUGACCAAGUAUAAGAUGGG	chr12:56498355-56498640(+)$1	285	212	237	19.2569
CAAGGUUGGCAUUAAUUACCAGCCU	chr12:49666689-49666938(+)$1	249	23	48	11.9827

#DB
..(((((.........))))).)))	chr16:29677284-29677572(+)$1	1	217	242	11.6504
(.(((..(.........)..)))).	chr16:23701454-23701690(+)$1	1	110	135	12.5872
((..((((..........))))..)	chr1:206906145-206906392(+)$1	1	153	178	13.0514
(..((((((.........)))))).	chr22:22049865-22050118(+)$1	1	160	185	11.6502
(((((((...........)))))))	chr7:77166497-77166756(+)$1	1	158	183	17.1606
..((((((..........))).)))	chr9:131398221-131398481(-)$1	1	179	204	14.7134
((.(.((............)).).)	chr1:155658335-155658594(-)$1	1	16	41	18.7325
.(((..(((.........))).)))	chr1:6245461-6245687(-)$1	1	121	146	12.6656
.((..(.(..........).).)).	chr1:87380287-87380651(+)$1	1	132	157	13.8758
(.(((((...........))))).)	chr21:35469534-35469786(+)$1	1	146	171	18.8730
...((((.............)))).	chr2:71653837-71654099(+)$1	1	45	70	17.7254
.((((((...........))).)))	chr3:195635555-195635812(-)$1	1	111	136	19.7640
((..(..............)..))(	chr8:101964387-101964694(-)$1	1	123	148	17.3685
(((((((...........)))))))	chr3:23959237-23959462(+)$1	1	1	26	17.1606
(((((((..................	chr11:62334186-62334393(-)$1	1	28	53	12.1983
(((((((...........)))))))	chr6:44081132-44081397(-)$1	1	93	118	20.0600
.((((((............))))))	chr6:160204917-160205188(-)$1	1	55	80	18.2771
((.((.............)).)).(	chr11:124506293-124506539(+)$1	1	21	46	15.7996
(((((((..............))))	chr1:235273956-235274203(-)$1	1	159	184	19.4218
((((((.............))))))	chr1:149857118-149857356(-)$1	1	165	190	19.0791
..(((((..........)))))..)	chr12:98994927-98995159(+)$1	1	162	187	13.2861
))(((((...........)).)))(	chr1:19401030-19401274(-)$1	1	169	194	18.6627
((..(((((.........))))).)	chr19:48983004-48983259(+)$1	1	134	159	11.3162
.((((.............))))...	chr8:91636275-91636537(-)$1	1	226	251	18.2040
)(((((.(..........)))))))	chr17:27047467-27047734(+)$1	1	179	204	13.1845
..(((((.............)))))	chr1:10479966-10480214(+)$1	1	196	221	19.0352
..((((............))))(((	chr10:73576684-73576929(-)$1	1	85	110	16.2028
((((((.............))))))	chr3:9519600-9519847(+)$1	1	163	188	19.0791
(((((.(................).	chr6:111136358-111136629(-)$1	1	67	92	15.3579
(((((((............))))))	chr7:112090961-112091219(+)$1	1	47	72	20.1917
(((((((.............)))))	chr19:58367296-58367560(+)$1	1	75	100	18.3260
(((((..............))))).	chr15:66786570-66786885(-)$1	1	0	25	17.7272
(.((((((..........)).))))	chr17:76116537-76116821(-)$1	1	241	266	12.9025
(..((((((.........)))))))	chr17:76122910-76123196(-)$1	1	39	64	11.7989
(((((((.........)))))))((	chr1:27106041-27106263(+)$1	1	97	122	11.3720
((((((((..........)).))))	chr16:88718430-88718690(-)$1	1	108	133	14.2227
((((..(...........).)))))	chr14:23791034-23791279(+)$1	1	137	162	19.3387
(((((((...........)))))))	chr10:73576084-73576332(-)$1	1	195	220	19.6400
((((((.((.........)))))))	chr3:121435665-121435913(-)$1	1	184	209	11.2151
(((.(((.............))).)	chr2:97525527-97525828(-)$1	1	208	233	20.1225
..(((((..........)))))...	chr11:5275551-5275802(-)$1	1	93	118	13.0678
(((((((..............))))	chr1:228336383-228336642(+)$1	1	198	223	17.5904
((.(.(.(.........).).).))	chr6:34664385-34664665(-)$1	1	106	131	12.2686
(((((.(((.........)))..))	chr11:119177370-119177636(+)$1	1	41	66	11.7132
((((.((............))))))	chr1:21069250-21069481(-)$1	1	33	58	18.5907
((..(((............))))))	chr16:30081494-30081709(+)$1	1	54	79	19.3586
(((((((.............)))))	chr1:52882283-52882532(+)$1	1	167	192	20.1060
(((((((............))))))	chr9:139729816-139730072(+)$1	1	197	222	20.1917
(((((..............))))))	chr6:31797494-31797751(+)$1	1	187	212	19.4331
((..(((............))))))	chr16:30081483-30081694(+)$1	1	65	90	19.3586
.((((((...........)))))).	chr6:76311783-76312086(+)$1	1	152	177	18.9509
((((.((((.........)))))))	chr17:38286190-38286478(+)$1	1	41	66	11.6401
(.(((..............))).))	chr12:56498355-56498640(+)$1	1	212	237	19.2569
))(((((((.........)))))))	chr12:49666689-49666938(+)$1	1	23	48	11.9827

#PSSM
g : 0.14	c : 0.11	d : 0.09	b : 0.09	f : 0.09	! : 0.05	$ : 0.05	[ : 0.05	= : 0.05	e : 0.05	h : 0.03	" : 0.03	: : 0.03	i : 0.03	a : 0.01	G : 0.01	
g : 0.12	f : 0.12	c : 0.09	d : 0.09	b : 0.09	! : 0.07	[ : 0.07	e : 0.07	$ : 0.05	= : 0.05	h : 0.03	i : 0.03	" : 0.01	: : 0.01	G : 0.01	
e : 0.18	g : 0.14	! : 0.12	f : 0.12	c : 0.11	d : 0.07	[ : 0.05	= : 0.05	h : 0.03	i : 0.03	b : 0.01	$ : 0.01	
e : 0.18	f : 0.16	g : 0.14	c : 0.11	! : 0.11	d : 0.09	h : 0.03	a : 0.03	= : 0.03	i : 0.03	b : 0.01	[ : 0.01	
e : 0.18	c : 0.14	f : 0.14	g : 0.12	d : 0.11	[ : 0.07	! : 0.05	h : 0.03	= : 0.03	i : 0.03	a : 0.01	b : 0.01	
e : 0.14	f : 0.12	g : 0.12	d : 0.11	c : 0.09	w : 0.07	! : 0.05	b : 0.05	h : 0.03	a : 0.03	= : 0.03	v : 0.03	[ : 0.03	i : 0.01	
e : 0.12	c : 0.12	g : 0.11	b : 0.09	d : 0.07	f : 0.07	[ : 0.07	w : 0.07	v : 0.07	a : 0.05	h : 0.03	! : 0.01	= : 0.01	u : 0.01	i : 0.01	
t : 0.16	v : 0.16	u : 0.14	w : 0.11	a : 0.07	c : 0.05	b : 0.05	r : 0.03	d : 0.03	f : 0.03	s : 0.03	^ : 0.01	e : 0.01	y : 0.01	g : 0.01	
t : 0.16	v : 0.16	s : 0.14	u : 0.14	w : 0.11	r : 0.07	f : 0.03	c : 0.03	^ : 0.01	e : 0.01	y : 0.01	b : 0.01	d : 0.01	g : 0.01	
r : 0.22	t : 0.16	v : 0.16	s : 0.14	u : 0.14	w : 0.11	^ : 0.01	y : 0.01	
r : 0.22	t : 0.16	v : 0.16	s : 0.14	u : 0.14	w : 0.11	^ : 0.01	y : 0.01	
r : 0.22	t : 0.16	v : 0.16	s : 0.14	u : 0.14	w : 0.11	^ : 0.01	y : 0.01	
r : 0.22	t : 0.16	v : 0.16	s : 0.14	u : 0.14	w : 0.11	^ : 0.01	y : 0.01	
r : 0.22	t : 0.16	v : 0.16	s : 0.14	u : 0.14	w : 0.11	^ : 0.01	y : 0.01	
r : 0.22	t : 0.16	v : 0.16	s : 0.14	u : 0.14	w : 0.11	^ : 0.01	y : 0.01	
r : 0.22	t : 0.16	v : 0.16	s : 0.14	u : 0.14	w : 0.11	^ : 0.01	y : 0.01	
r : 0.18	t : 0.16	v : 0.16	s : 0.14	u : 0.14	w : 0.11	e : 0.01	^ : 0.01	y : 0.01	g : 0.01	
t : 0.16	v : 0.16	r : 0.14	u : 0.14	s : 0.11	w : 0.11	e : 0.05	a : 0.03	^ : 0.01	y : 0.01	g : 0.01	
u : 0.12	v : 0.12	w : 0.11	e : 0.09	b : 0.09	d : 0.07	c : 0.07	f : 0.05	a : 0.05	h : 0.03	g : 0.03	2 : 0.01	^ : 0.01	= : 0.01	y : 0.01	i : 0.01	] : 0.01	
e : 0.12	c : 0.12	b : 0.12	f : 0.11	v : 0.09	d : 0.07	g : 0.07	h : 0.03	] : 0.03	a : 0.03	w : 0.03	i : 0.03	2 : 0.01	^ : 0.01	= : 0.01	y : 0.01	
e : 0.16	c : 0.16	f : 0.14	d : 0.09	] : 0.09	g : 0.09	h : 0.03	b : 0.03	w : 0.03	i : 0.03	a : 0.01	2 : 0.01	^ : 0.01	= : 0.01	y : 0.01	
e : 0.16	f : 0.14	d : 0.12	] : 0.11	c : 0.11	g : 0.11	h : 0.03	2 : 0.03	= : 0.03	i : 0.03	^ : 0.01	b : 0.01	y : 0.01	a : 0.01	
f : 0.14	e : 0.14	c : 0.12	g : 0.12	d : 0.09	2 : 0.05	b : 0.05	h : 0.03	= : 0.03	i : 0.03	] : 0.03	a : 0.01	^ : 0.01	3 : 0.01	y : 0.01	4 : 0.01	
f : 0.16	e : 0.12	c : 0.11	g : 0.11	d : 0.09	] : 0.07	b : 0.05	a : 0.03	2 : 0.03	h : 0.03	= : 0.03	i : 0.03	^ : 0.01	: : 0.01	3 : 0.01	4 : 0.01	
c : 0.12	d : 0.11	f : 0.11	g : 0.11	e : 0.09	] : 0.07	b : 0.05	= : 0.05	i : 0.05	h : 0.03	H : 0.03	2 : 0.01	6 : 0.01	^ : 0.01	3 : 0.01	J : 0.01	: : 0.01	4 : 0.01	

#score	876.5125220560722
#seq	54
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_UTR_m2_run1.txt

#BEAR
:eeeee[auuuuuuuuuuuua]eee	chr3:184080975-184081227(+)$1	252	92	117	22.3380
==!!cccbbuuuuuuuuuuuubb22	chr11:116708001-116708231(-)$1	230	9	34	22.7357
cc"""eeeeettttttttttteeee	chr12:7024848-7025095(+)$1	247	74	99	21.6950
=========uuuuuuuuuuuu====	chr3:48560829-48561077(-)$1	248	170	195	23.4705
fff[dddduuuuuuuuuuuuddddf	chr18:55282958-55283217(-)$1	259	85	110	21.9343
fff!!eeeeettttttttttteeee	chr15:56434957-56435229(-)$1	272	152	177	21.4291
[gggggggvvvvvvvvvvvvvgggg	chr7:150774341-150774652(-)$1	311	147	172	24.1372
::a[cccwwwwwwwwwwwwwwccc]	chr14:35099057-35099333(-)$1	276	97	122	21.1262
DDDeeeeevvvvvvvvvvvvveeee	chr15:72494651-72494897(-)$1	246	164	189	20.9977
d[eeeeexxxxxxxxxxxxxxxeee	chr3:183962380-183962677(-)$1	297	96	121	18.1988
ccc!!dddduuuuuuuuuuuudddd	chr7:100771563-100771799(+)$1	236	180	205	23.0198
"ddddddddtttttttttttdddd]	chr15:70344721-70345056(-)$1	335	37	62	21.0896
dd:eeeeevvvvvvvvvvvvveeee	chr11:116708184-116708420(-)$1	236	42	67	22.8491
gggggg[bbuuuuuuuuuuuubbgg	chr7:1199457-1199702(-)$1	245	29	54	22.9329
dddd[cccvvvvvvvvvvvvvccc]	chr12:1904312-1904568(-)$1	256	5	30	23.6619
[gggggggvvvvvvvvvvvvvgggg	chr3:121414146-121414417(-)$1	271	132	157	24.1372
==!!cccbbuuuuuuuuuuuubb22	chr11:116708031-116708248(-)$1	217	26	51	22.7357
:::eeeeeuuuuuuuuuuuueeeee	chr6:3285165-3285436(-)$1	271	227	252	20.2927
ffffeeeeeuuuuuuuuuuuueeee	chr5:133496655-133496937(-)$1	282	214	239	22.6308
gggeeeeevvvvvvvvvvvvveeee	chr4:107237626-107237890(+)$1	264	184	209	24.0228
:gggggggwwwwwwwwwwwwwwggg	chr7:1197774-1198041(-)$1	267	143	168	22.2393
eeeee[bbyyyyyyyyyyyyyyyyb	chr6:52129304-52129522(-)$1	218	168	193	20.1369
:::eeeeeuuuuuuuuuuuueeeee	chr16:84793641-84793888(+)$1	247	104	129	20.2927
eee!!bb[atttttttttttabb22	chr19:15514399-15514695(-)$1	296	233	258	21.5569
ccbb[ddddtttttttttttdddd]	chr20:57289623-57289867(+)$1	244	101	126	21.2156
C:eeeeewwwwwwwwwwwwwweeee	chr3:195808803-195809018(-)$1	215	9	34	20.7217
hh[eeeeevvvvvvvvvvvvveeee	chr11:89935588-89935947(-)$1	359	101	126	23.6870
!gggggggvvvvvvvvvvvvvgggg	chr5:137909430-137909703(-)$1	273	188	213	24.1772
c"""bb[ccctttttttttttccc]	chr12:56477369-56477668(+)$1	299	179	204	21.5905
!ccc!!cccuuuuuuuuuuuuccc2	chr3:11643333-11643677(-)$1	344	13	38	23.6366
e!!bb[ddddtttttttttttdddd	chr17:4851417-4851646(-)$1	229	19	44	20.7768
d[fffffftttttttttttffffff	chr12:46756804-46757050(-)$1	246	80	105	19.5935
+a!!dddduuuuuuuuuuuudddd2	chr6:31498046-31498299(-)$1	253	31	56	22.1409
========wwwwwwwwwwwwww===	chr17:7481126-7481365(+)$1	239	40	65	23.1067
hhhhhhhhvvvvvvvvvvvvvhhhh	chr9:35068194-35068475(-)$1	281	11	36	22.2473
"gggggggtttttttttttgggggg	chr17:67323046-67323293(-)$1	247	152	177	20.9947
d[ccc[bbyyyyyyyyyyyyyyyyb	chr19:14628809-14629078(-)$1	269	3	28	20.5023
""cccyyyyyyyyyyyyyyyyccc=	chr12:76444156-76444478(-)$1	322	249	274	20.5589
"gggggggwwwwwwwwwwwwwwggg	chr12:53862440-53862719(+)$1	279	96	121	23.0709
c[aeeeeevvvvvvvvvvvvveeee	chr16:8904859-8905147(+)$1	288	22	47	24.1169
d!!ccc[ccctttttttttttccc]	chr7:6098460-6098733(-)$1	273	216	241	22.1702
===!!dddduuuuuuuuuuuudddd	chr19:1219213-1219557(+)$1	344	305	330	23.0487
dddeeeeevvvvvvvvvvvvveeee	chr4:74285855-74286079(+)$1	224	86	111	23.6179
hhhhhhhhvvvvvvvvvvvvvhhhh	chr22:41980148-41980385(-)$1	237	138	163	22.2473
fff!!cccwwwwwwwwwwwwwwccc	chr10:45487246-45487585(+)$1	339	35	60	22.5301
bb[bb[bbvvvvvvvvvvvvvbbbb	chr17:37863065-37863372(+)$1	307	235	260	21.9622
iiiii[bbwwwwwwwwwwwwwwbb2	chr8:11687625-11687874(+)$1	249	194	219	22.3949
egggggggvvvvvvvvvvvvvgggg	chr3:52017925-52018187(+)$1	262	106	131	23.9494
gccc!!bbwwwwwwwwwwwwwwbb]	chr1:156448895-156449203(-)$1	308	78	103	22.4639
ffff"""ccctttttttttttccc2	chr19:18474000-18474304(+)$1	304	212	237	21.1107
hhhhhhhhwwwwwwwwwwwwwwhhh	chr19:50363573-50363811(+)$1	238	73	98	21.3913
:::ddddwwwwwwwwwwwwwwdddd	chr9:104161366-104161621(+)$1	255	177	202	19.2929
####ddddyyyyyyyyyyyyyyyyd	chr8:98725774-98726111(+)$1	337	296	321	20.6048
dddbb[bbtttttttttttbb]bb]	chr6:36568807-36569066(+)$1	259	66	91	19.5540
hhhhhhhhyyyyyyyyyyyyyyyyh	chr12:57626809-57627107(+)$1	298	128	153	19.9442

#otherMatches

#Seq PSSM
UUCGGGACGGAAGUUAAGUAGCCCC	chr3:184080975-184081227(+)$1	252	92	117	22.3380
UCUGUGCCCUUCUCCUCACCUGGCU	chr11:116708001-116708231(-)$1	230	9	34	22.7357
AUCUCAGGCUCCACCCCUCUAAGCC	chr12:7024848-7025095(+)$1	247	74	99	21.6950
AUGAUUUUCUCCGAAUUCCUUGAAA	chr3:48560829-48561077(-)$1	248	170	195	23.4705
GUUAUUUCUAAAUCACAGUUGAAGA	chr18:55282958-55283217(-)$1	259	85	110	21.9343
UAGUCGGGCACAACAAAUGCAUGCC	chr15:56434957-56435229(-)$1	272	152	177	21.4291
guguccuuucuccucagucacAAGG	chr7:150774341-150774652(-)$1	311	147	172	24.1372
CUGUCACUAAUGUCUCCCUUUGUGU	chr14:35099057-35099333(-)$1	276	97	122	21.1262
UGGGAGCAGUCCAUUGAACAAUGCU	chr15:72494651-72494897(-)$1	246	164	189	20.9977
GGUAUGUCUUUGGGUGUUGUGUGCA	chr3:183962380-183962677(-)$1	297	96	121	18.1988
GUGCACCAUCCCCCAUCCUACGUGG	chr7:100771563-100771799(+)$1	236	180	205	23.0198
uggggauggaaaaugaccucccaua	chr15:70344721-70345056(-)$1	335	37	62	21.0896
GGCUGCAGACAUAAAUAGGCCCUGC	chr11:116708184-116708420(-)$1	236	42	67	22.8491
GAGGAGGACACCUGAGUUUACGUCU	chr7:1199457-1199702(-)$1	245	29	54	22.9329
ACAGUGGCUUCUGCACAUAAUGCCU	chr12:1904312-1904568(-)$1	256	5	30	23.6619
AGAGCUGGAAGAAGAGAAUGACCGG	chr3:121414146-121414417(-)$1	271	132	157	24.1372
UCUGUGCCCUUCUCCUCACCUGGCU	chr11:116708031-116708248(-)$1	217	26	51	22.7357
CCCGUUGCCCUCCAAGAACUGCAGC	chr6:3285165-3285436(-)$1	271	227	252	20.2927
AGAAUUCCUGAAAGUUGACCAAGGA	chr5:133496655-133496937(-)$1	282	214	239	22.6308
UUCCUUCUCUAACUUGCCUCCAGGA	chr4:107237626-107237890(+)$1	264	184	209	24.0228
UGUAGGUGACACUUAACUCCGCCAU	chr7:1197774-1198041(-)$1	267	143	168	22.2393
GAGAGAGUUUGUUCUGUGUUUCCCA	chr6:52129304-52129522(-)$1	218	168	193	20.1369
UUAGGAAAACCUGUGUCCUCUUUCC	chr16:84793641-84793888(+)$1	247	104	129	20.2927
UAUGGCCACUUCACACUCUUGGGAA	chr19:15514399-15514695(-)$1	296	233	258	21.5569
CUGUGAGUGUCUCCCCUCCCCACUG	chr20:57289623-57289867(+)$1	244	101	126	21.2156
GGGGCGGGGCCAGGCUAUAAACCGC	chr3:195808803-195809018(-)$1	215	9	34	20.7217
AGACUAGAUAUAAAAGAGGCCUUUA	chr11:89935588-89935947(-)$1	359	101	126	23.6870
UGUUGGUAUUGAUUUGGGUACUACC	chr5:137909430-137909703(-)$1	273	188	213	24.1772
CUGAAUGGCCUGAGUGUGACCGGCG	chr12:56477369-56477668(+)$1	299	179	204	21.5905
ACCACACUCAAACCAUGUUCAGAGG	chr3:11643333-11643677(-)$1	344	13	38	23.6366
CAUCGUGGGCUACAAGGACUCGCCC	chr17:4851417-4851646(-)$1	229	19	44	20.7768
AUGAAAACAGCCAAUCAAAGUUUUU	chr12:46756804-46757050(-)$1	246	80	105	19.5935
UUUUCAUGCCUUAUUCUGACCAUGC	chr6:31498046-31498299(-)$1	253	31	56	22.1409
AACGAGACGUGAUUAUGAGGGAGUU	chr17:7481126-7481365(+)$1	239	40	65	23.1067
AGGGACAGCUUCAUCUAUUCACUGU	chr9:35068194-35068475(-)$1	281	11	36	22.2473
CCGUCCCUGGGGGAGUUGAGGGGAC	chr17:67323046-67323293(-)$1	247	152	177	20.9947
GCGCUACCACCCGGACAAGAACAAG	chr19:14628809-14629078(-)$1	269	3	28	20.5023
AAGAAGCAGGACAUAAUAUAAUUCA	chr12:76444156-76444478(-)$1	322	249	274	20.5589
UGCUUGCUCUCUUCUGUCUUUUAGC	chr12:53862440-53862719(+)$1	279	96	121	23.0709
UGCCCAAAUGAAUAACGUGUUUUUG	chr16:8904859-8905147(+)$1	288	22	47	24.1169
UUUGCCUGAGGACCUGGGCGACUUU	chr7:6098460-6098733(-)$1	273	216	241	22.1702
AGGCCCAAguuuuuuuguuuuuuug	chr19:1219213-1219557(+)$1	344	305	330	23.0487
CCUAACAUCUGUCAUGUCUUUGUGU	chr4:74285855-74286079(+)$1	224	86	111	23.6179
CUGAGGGAGGAGAAGUGUGGGUCCC	chr22:41980148-41980385(-)$1	237	138	163	22.2473
GCCUUGAGGAAAAGAAAACAUACUU	chr10:45487246-45487585(+)$1	339	35	60	22.5301
CAUGCUCCGCCACCUCUACCAGGGC	chr17:37863065-37863372(+)$1	307	235	260	21.9622
AGUGCCUGAAUGAACUUAUAACCAA	chr8:11687625-11687874(+)$1	249	194	219	22.3949
AGGGGUAGUUAGCCAUUCACUUUGC	chr3:52017925-52018187(+)$1	262	106	131	23.9494
GGGUGACCUGAACAGUGCUAACGGA	chr1:156448895-156449203(-)$1	308	78	103	22.4639
CUUUACCUACUACACCUCUUUGUAC	chr19:18474000-18474304(+)$1	304	212	237	21.1107
UGGGGUUGGGAAAGAAGCAGGGCGA	chr19:50363573-50363811(+)$1	238	73	98	21.3913
CCCCAGGCCCCCCACCAACCUCCUG	chr9:104161366-104161621(+)$1	255	177	202	19.2929
AAAAAUACAUAGAGAUAAAAGACAG	chr8:98725774-98726111(+)$1	337	296	321	20.6048
UCACGCCAUAAAUACUAAUUGAUGA	chr6:36568807-36569066(+)$1	259	66	91	19.5540
CUCUGACCAUCCACCUCUCACACAG	chr12:57626809-57627107(+)$1	298	128	153	19.9442

#DB
.(((((.(............).)))	chr3:184080975-184081227(+)$1	1	92	117	22.3380
((..(((((............))..	chr11:116708001-116708231(-)$1	1	9	34	22.7357
((...(((((...........))))	chr12:7024848-7025095(+)$1	1	74	99	21.6950
(((((((((............))))	chr3:48560829-48561077(-)$1	1	170	195	23.4705
(((.((((............)))))	chr18:55282958-55283217(-)$1	1	85	110	21.9343
(((..(((((...........))))	chr15:56434957-56435229(-)$1	1	152	177	21.4291
.(((((((.............))))	chr7:150774341-150774652(-)$1	1	147	172	24.1372
..(.(((..............))).	chr14:35099057-35099333(-)$1	1	97	122	21.1262
)))(((((.............))))	chr15:72494651-72494897(-)$1	1	164	189	20.9977
(.(((((...............)))	chr3:183962380-183962677(-)$1	1	96	121	18.1988
(((..((((............))))	chr7:100771563-100771799(+)$1	1	180	205	23.0198
.((((((((...........)))).	chr15:70344721-70345056(-)$1	1	37	62	21.0896
)).(((((.............))))	chr11:116708184-116708420(-)$1	1	42	67	22.8491
((((((.((............))))	chr7:1199457-1199702(-)$1	1	29	54	22.9329
((((.(((.............))).	chr12:1904312-1904568(-)$1	1	5	30	23.6619
.(((((((.............))))	chr3:121414146-121414417(-)$1	1	132	157	24.1372
((..(((((............))..	chr11:116708031-116708248(-)$1	1	26	51	22.7357
...(((((............)))))	chr6:3285165-3285436(-)$1	1	227	252	20.2927
(((((((((............))))	chr5:133496655-133496937(-)$1	1	214	239	22.6308
((((((((.............))))	chr4:107237626-107237890(+)$1	1	184	209	24.0228
.(((((((..............)))	chr7:1197774-1198041(-)$1	1	143	168	22.2393
(((((.((................)	chr6:52129304-52129522(-)$1	1	168	193	20.1369
...(((((............)))))	chr16:84793641-84793888(+)$1	1	104	129	20.2927
(((..((.(...........)))..	chr19:15514399-15514695(-)$1	1	233	258	21.5569
((((.((((...........)))).	chr20:57289623-57289867(+)$1	1	101	126	21.2156
(.(((((..............))))	chr3:195808803-195809018(-)$1	1	9	34	20.7217
((.(((((.............))))	chr11:89935588-89935947(-)$1	1	101	126	23.6870
.(((((((.............))))	chr5:137909430-137909703(-)$1	1	188	213	24.1772
(...((.(((...........))).	chr12:56477369-56477668(+)$1	1	179	204	21.5905
.(((..(((............))).	chr3:11643333-11643677(-)$1	1	13	38	23.6366
(..((.((((...........))))	chr17:4851417-4851646(-)$1	1	19	44	20.7768
(.((((((...........))))))	chr12:46756804-46757050(-)$1	1	80	105	19.5935
.(..((((............)))).	chr6:31498046-31498299(-)$1	1	31	56	22.1409
((((((((..............)))	chr17:7481126-7481365(+)$1	1	40	65	23.1067
((((((((.............))))	chr9:35068194-35068475(-)$1	1	11	36	22.2473
.(((((((...........))))))	chr17:67323046-67323293(-)$1	1	152	177	20.9947
(.(((.((................)	chr19:14628809-14629078(-)$1	1	3	28	20.5023
..(((................))))	chr12:76444156-76444478(-)$1	1	249	274	20.5589
.(((((((..............)))	chr12:53862440-53862719(+)$1	1	96	121	23.0709
(.((((((.............))))	chr16:8904859-8905147(+)$1	1	22	47	24.1169
(..(((.(((...........))).	chr7:6098460-6098733(-)$1	1	216	241	22.1702
(((..((((............))))	chr19:1219213-1219557(+)$1	1	305	330	23.0487
((((((((.............))))	chr4:74285855-74286079(+)$1	1	86	111	23.6179
((((((((.............))))	chr22:41980148-41980385(-)$1	1	138	163	22.2473
(((..(((..............)))	chr10:45487246-45487585(+)$1	1	35	60	22.5301
((.((.((.............))))	chr17:37863065-37863372(+)$1	1	235	260	21.9622
(((((.((..............)).	chr8:11687625-11687874(+)$1	1	194	219	22.3949
)(((((((.............))))	chr3:52017925-52018187(+)$1	1	106	131	23.9494
((((..((..............)).	chr1:156448895-156449203(-)$1	1	78	103	22.4639
((((...(((...........))).	chr19:18474000-18474304(+)$1	1	212	237	21.1107
((((((((..............)))	chr19:50363573-50363811(+)$1	1	73	98	21.3913
...((((..............))))	chr9:104161366-104161621(+)$1	1	177	202	19.2929
....((((................)	chr8:98725774-98726111(+)$1	1	296	321	20.6048
(((((.((...........)).)).	chr6:36568807-36569066(+)$1	1	66	91	19.5540
((((((((................)	chr12:57626809-57627107(+)$1	1	128	153	19.9442

#PSSM
d : 0.14	: : 0.10	= : 0.09	c : 0.09	f : 0.09	h : 0.09	" : 0.07	e : 0.07	g : 0.05	[ : 0.03	! : 0.03	D : 0.01	C : 0.01	+ : 0.01	b : 0.01	i : 0.01	# : 0.01	
g : 0.16	= : 0.09	c : 0.09	f : 0.09	: : 0.09	d : 0.09	h : 0.09	[ : 0.07	e : 0.05	" : 0.03	! : 0.03	D : 0.01	a : 0.01	b : 0.01	i : 0.01	# : 0.01	
g : 0.16	f : 0.10	e : 0.09	! : 0.09	c : 0.09	d : 0.07	: : 0.07	h : 0.07	= : 0.05	" : 0.03	a : 0.03	[ : 0.03	D : 0.01	b : 0.01	i : 0.01	# : 0.01	
e : 0.21	! : 0.14	g : 0.14	c : 0.09	b : 0.07	h : 0.07	d : 0.05	f : 0.05	" : 0.03	= : 0.03	[ : 0.03	i : 0.01	# : 0.01	
e : 0.23	g : 0.14	! : 0.12	c : 0.10	d : 0.09	b : 0.07	h : 0.07	" : 0.03	= : 0.03	[ : 0.03	f : 0.01	i : 0.01	
e : 0.25	d : 0.14	g : 0.14	c : 0.10	[ : 0.10	h : 0.07	= : 0.03	b : 0.03	! : 0.03	f : 0.01	y : 0.01	" : 0.01	
e : 0.23	d : 0.16	g : 0.12	b : 0.12	c : 0.10	[ : 0.07	h : 0.07	= : 0.03	f : 0.01	y : 0.01	" : 0.01	
e : 0.20	b : 0.16	d : 0.14	g : 0.12	c : 0.10	h : 0.07	w : 0.05	= : 0.03	a : 0.01	x : 0.01	[ : 0.01	f : 0.01	y : 0.01	
v : 0.25	w : 0.18	u : 0.09	d : 0.09	y : 0.09	c : 0.07	b : 0.05	e : 0.05	t : 0.05	= : 0.01	x : 0.01	a : 0.01	
v : 0.25	u : 0.23	w : 0.18	t : 0.10	y : 0.09	c : 0.05	e : 0.03	x : 0.01	d : 0.01	
v : 0.25	u : 0.23	t : 0.21	w : 0.18	y : 0.09	x : 0.01	
v : 0.25	u : 0.23	t : 0.21	w : 0.18	y : 0.09	x : 0.01	
v : 0.25	u : 0.23	t : 0.21	w : 0.18	y : 0.09	x : 0.01	
v : 0.25	u : 0.23	t : 0.21	w : 0.18	y : 0.09	x : 0.01	
v : 0.25	u : 0.23	t : 0.21	w : 0.18	y : 0.09	x : 0.01	
v : 0.25	u : 0.23	t : 0.21	w : 0.18	y : 0.09	x : 0.01	
v : 0.25	u : 0.23	t : 0.21	w : 0.18	y : 0.09	x : 0.01	
v : 0.25	u : 0.23	t : 0.21	w : 0.18	y : 0.09	x : 0.01	
v : 0.25	u : 0.23	t : 0.21	w : 0.18	y : 0.09	x : 0.01	
v : 0.25	u : 0.23	w : 0.18	t : 0.16	y : 0.09	x : 0.01	f : 0.01	g : 0.01	b : 0.01	
v : 0.25	w : 0.18	u : 0.14	t : 0.10	y : 0.09	d : 0.07	a : 0.03	e : 0.03	x : 0.01	f : 0.01	g : 0.01	b : 0.01	
e : 0.21	d : 0.14	c : 0.12	w : 0.12	b : 0.09	g : 0.09	y : 0.07	] : 0.03	h : 0.03	= : 0.01	x : 0.01	f : 0.01	
e : 0.25	b : 0.14	d : 0.14	c : 0.14	g : 0.12	y : 0.07	h : 0.05	= : 0.03	f : 0.01	
e : 0.25	d : 0.14	g : 0.14	c : 0.14	y : 0.07	b : 0.07	2 : 0.05	h : 0.05	= : 0.03	f : 0.01	
e : 0.25	g : 0.14	] : 0.14	2 : 0.12	d : 0.09	h : 0.07	= : 0.05	b : 0.05	f : 0.03	c : 0.01	

#score	1208.083736206733
#seq	55
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_CDS_m3_run2.txt

#BEAR
b[ddddcccrrrrrrrrrccc]dddd]bb>	chr19:14203529-14203789(-)$1	260	33	63	10.6902
[bb####ccc[arrrrrrrrra]ccc333b	chr5:180651183-180651430(+)$1	247	188	218	10.7558
"cccgggggggqqqqqqqqggggggg4444	chr16:69165156-69165419(-)$1	263	222	252	10.0060
eeeee[eeeeepppppppeeeee]eeeee]	chr11:61197014-61197365(-)$1	351	7	37	15.5392
dccc"""ddddpppppppddddccc]dddd	chr8:145016484-145016764(-)$1	280	135	165	14.8919
dd[ccc[ddddpppppppddddccc]dddd	chr11:2154676-2154880(-)$1	204	102	132	14.8469
ee[bb[eeeeepppppppeeeee]bb]eee	chr16:29818189-29818441(-)$1	252	15	45	14.8685
eeeee[eeeeepppppppeeeee]eeeee:	chr11:61197165-61197469(-)$1	304	111	141	14.6323
hhhdddd[cccpppppppccc]dddd4444	chrX:48761795-48762085(-)$1	290	231	261	12.9219
ggggg[eeeeeqqqqqqqqeeeee]ggggg	chr17:58469092-58469368(-)$1	276	16	46	10.6118
eee####ddddqqqqqqqqdddd333eeee	chr12:122185998-122186340(+)$1	342	271	301	10.5376
dddd[aeeeeepppppppeeeee]a]dddd	chr16:4664477-4664729(-)$1	252	104	134	15.0295
bb[bb[eeeeepppppppeeeee]bb22bb	chr4:667804-668112(+)$1	308	257	287	13.6635
g"""gggggggpppppppgggggggggggg	chr1:36788393-36788683(+)$1	290	229	259	13.4533
bb[ffffffrrrrrrrrrffffffbb]ccc	chr1:1363011-1363242(+)$1	231	192	222	10.5083
[a[bbccc[bbrrrrrrrrrbb]ccc22bb	chr22:20110050-20110328(+)$1	278	154	184	10.7516
""dddd[ddddpppppppdddd333dddd3	chrX:102840512-102840872(+)$1	360	58	88	14.5550
[a[gggggggqqqqqqqqggggggg333a]	chr2:242755212-242755478(+)$1	266	135	165	10.0583
bb[bb[bb[bbpppppppbb]bb]bb]bb]	chr7:65338182-65338467(+)$1	285	48	78	10.8399
eeee!!bb[bbpppppppbb]bb22eeeee	chr19:10222219-10222520(+)$1	301	114	144	12.1218
dddd[a[ddddpppppppdddd]a]ddddc	chr11:208941-209281(+)$1	340	140	170	14.6857
dd!!bb!!cccpppppppccc22bb22ddd	chr7:77166708-77166978(+)$1	270	66	96	12.5618
gggggg!!cccpppppppcccgggggggcc	chr17:17726765-17727010(-)$1	245	76	106	14.0187
ccc[eeeee[aqqqqqqqqa]eeeee]ccc	chr17:48784706-48785039(-)$1	333	13	43	9.8804
eeeee[ddddrrrrrrrrrdddd]eeeeef	chr11:2154329-2154541(-)$1	212	91	121	13.7057
cccccffffffpppppppffffff4444cc	chr11:6632983-6633374(-)$1	391	80	110	13.1346
dd[eeeee[bbpppppppbb]eeeee22dd	chr4:2819879-2820159(+)$1	280	56	86	13.3191
dddd[eeeeerrrrrrrrreeeee]dddd:	chr14:24901491-24901781(+)$1	290	161	191	12.5499
!!a[gggggggpppppppggggggg]a444	chr2:242447738-242447989(-)$1	251	198	228	14.1037
$$$gggggggrrrrrrrrrgggggggeeee	chr17:1359219-1359472(-)$1	253	163	193	12.1644
dddd[ccc[bbpppppppbb333cccdddd	chr8:145738788-145739056(+)$1	268	30	60	12.9647
eeee[ffffffrrrrrrrrrffffff]eee	chr19:47731322-47731591(-)$1	269	133	163	11.7322
eeeee[ddddrrrrrrrrrdddd]eeeeef	chr11:2154311-2154529(-)$1	218	79	109	13.7057
eeeee!!ddddpppppppdddd]eeeee]d	chr8:145623238-145623503(-)$1	265	211	241	14.9021
eeeee[eeeeeooooooeeeeeeeeeefff	chr19:1469362-1469635(-)$1	273	104	134	8.5775
=======[a[aqqqqqqqqa]a]=======	chr2:20423862-20424084(-)$1	222	17	47	9.9185
!!ccc[eeeeeooooooeeeee]ccc22dd	chr16:88798214-88798471(+)$1	257	147	177	9.4130
dddd!!ccc[apppppppa]ccc22dddd]	chr11:66627295-66627567(-)$1	272	35	65	13.8510
[ccc[eeeeerrrrrrrrreeeee333ccc	chr9:96026018-96026303(+)$1	285	183	213	14.0209
[ccc!!eeeeepppppppeeeeeccc]eee	chr19:18653565-18653856(-)$1	291	112	142	15.7617
!!ccc[bbcccpppppppccc]bb]ccc33	chr17:48546066-48546341(+)$1	275	73	103	13.4024
eeee!!ddddqqqqqqqqdddd22eeeee]	chr16:22019511-22019740(+)$1	229	114	144	10.3320
dd[ccc[ddddpppppppddddccc]dddd	chr11:2154646-2154848(-)$1	202	70	100	14.8469
adddd[eeeeepppppppeeeeedddd]a]	chr9:139904716-139905006(-)$1	290	50	80	14.7023
a[ccc[ddddqqqqqqqqdddd]ccc]a22	chr16:4744294-4744564(+)$1	270	187	217	10.3470
eeeee[ddddrrrrrrrrrdddd]eeeeef	chr11:2154342-2154547(-)$1	205	97	127	13.7057
#bbccc[ddddpppppppdddd]ccc4444	chr17:7232371-7232700(-)$1	329	245	275	14.6711
dd[ccc[ddddpppppppddddccc]dddd	chr11:2154657-2154862(-)$1	205	84	114	14.8469
fff[a[eeeeeqqqqqqqqeeeee]a]fff	chr22:37904893-37905151(-)$1	258	94	124	10.1444
ggggg[eeeeeqqqqqqqqeeeee]ggggg	chr17:58469168-58469454(-)$1	286	102	132	10.6118
eeeee[ddddrrrrrrrrrdddd]eeeeef	chr11:2154350-2154553(-)$1	203	103	133	13.7057
dd[ccc[ddddpppppppddddccc]dddd	chr11:2154651-2154857(-)$1	206	79	109	14.8469
"ccc!!cccrrrrrrrrrccc22ccc333b	chr19:49843454-49843707(-)$1	253	34	64	12.8111
::ccc[eeeeepppppppeeeee]ccc::a	chr7:766562-766860(-)$1	298	12	42	11.7133

#otherMatches

#Seq PSSM
GAGGGACAGAAACACCAGcugcucccccuc	chr19:14203529-14203789(-)$1	260	33	63	10.6902
GAGGAGGAGGACGAGGAGGAAGACCUGGAC	chr5:180651183-180651430(+)$1	247	188	218	10.7558
AAUUGAUUCCCUCCAACGUGGGAAUCCUAA	chr16:69165156-69165419(-)$1	263	222	252	10.0060
GUUGGGCCGGAAGAGGGGUCCGGGCCGGCA	chr11:61197014-61197365(-)$1	351	7	37	15.5392
CCGUGCUGGCUGGACGGGGGCUGCGAGCCG	chr8:145016484-145016764(-)$1	280	135	165	14.8919
GGGACGUGUCGACCCCUCCGACCGUGCUUC	chr11:2154676-2154880(-)$1	204	102	132	14.8469
gcagcagcggcggcagcggccgcagcagcc	chr16:29818189-29818441(-)$1	252	15	45	14.8685
GUUGGGCCGGAAGAGGGGUCCGGGCCGGCA	chr11:61197165-61197469(-)$1	304	111	141	14.6323
GGUGUGGGACUAGAGCUGGGUGUCACGUGA	chrX:48761795-48762085(-)$1	290	231	261	12.9219
GGGGUGGGGGCGAGAUCAGGCUCCGACCCC	chr17:58469092-58469368(-)$1	276	16	46	10.6118
UUCAGCAGAUGGCAGCGAACAUCAAGGAGC	chr12:122185998-122186340(+)$1	342	271	301	10.5376
GCGUGGCCGCCGGGCGGGGGCGGACGGCGU	chr16:4664477-4664729(-)$1	252	104	134	15.0295
GCACAACCUGCAGACGGAGCAGGAUGCCGC	chr4:667804-668112(+)$1	308	257	287	13.6635
UUCGCGGGGCAUCCAUGCUGCUCUGGGGGG	chr1:36788393-36788683(+)$1	290	229	259	13.4533
GCUCGCGCGCGACCCCAUCGCGUGGCCCGG	chr1:1363011-1363242(+)$1	231	192	222	10.5083
GGGCUCGGGACGAGGAGUGAGUGCUGCAGG	chr22:20110050-20110328(+)$1	278	154	184	10.7516
CACGCUGCCAGCGGAACACUGGAAUGGCGG	chrX:102840512-102840872(+)$1	360	58	88	14.5550
CCCGGGGGCUCUCUGGCCAGCCUCCCCUGC	chr2:242755212-242755478(+)$1	266	135	165	10.0583
gcggcggcggcggugguggcggcggcggcg	chr7:65338182-65338467(+)$1	285	48	78	10.8399
uggugacugggggaggggcuggggAACUGG	chr19:10222219-10222520(+)$1	301	114	144	12.1218
UGCAGUGUUGCGGGGAGAGUGGGGGUGCAC	chr11:208941-209281(+)$1	340	140	170	14.6857
GGAACGAGCUGGGGAAGACGGAGCGGGCUC	chr7:77166708-77166978(+)$1	270	66	96	12.5618
CGCGCCUUGACAGGUGAAGUCGGCGCGGGG	chr17:17726765-17727010(-)$1	245	76	106	14.0187
GCUGUGGGAAGAUGAACGCCCUCCUAGAGC	chr17:48784706-48785039(-)$1	333	13	43	9.8804
AACUUCCCCAGAUACCCCGUGGGCAAGUUC	chr11:2154329-2154541(-)$1	212	91	121	13.7057
GCCAGCCCCGCGGGGACAGCGGGGGGACCU	chr11:6632983-6633374(-)$1	391	80	110	13.1346
CCAGGGCCGGCGGGCAUggcgggcuccggg	chr4:2819879-2820159(+)$1	280	56	86	13.3191
CGGGGGCCUCAAUGGAAACGAGGCGCCCGA	chr14:24901491-24901781(+)$1	290	161	191	12.5499
ggggcucgguggcggggacaccggggcggg	chr2:242447738-242447989(-)$1	251	198	228	14.1037
UUCCUGGUGCGGGACUCGAGCACCAGCCCC	chr17:1359219-1359472(-)$1	253	163	193	12.1644
CACAUGCCCGCGUGGUAGGCCUCGGCUGUG	chr8:145738788-145739056(+)$1	268	30	60	12.9647
GCCUGGGGGUCCCCGCAGCCGGCCCCGAGG	chr19:47731322-47731591(-)$1	269	133	163	11.7322
AACUUCCCCAGAUACCCCGUGGGCAAGUUC	chr11:2154311-2154529(-)$1	218	79	109	13.7057
CGUGGCCGACCCCUAUGUGGUCAUCAUGAG	chr8:145623238-145623503(-)$1	265	211	241	14.9021
GGUGGUGCgccgggcagggcgcucgccagg	chr19:1469362-1469635(-)$1	273	104	134	8.5775
gcggccggcgcgggagcgggaggcggccgc	chr2:20423862-20424084(-)$1	222	17	47	9.9185
GGGGGAGGGACUUUCUUGUCCCACCCAGCA	chr16:88798214-88798471(+)$1	257	147	177	9.4130
CGGCAUCUCCCAGGUCCAGAGAGCAGCUGC	chr11:66627295-66627567(-)$1	272	35	65	13.8510
UGCAACACUGGGGACAAGAUGGUGGAGUGC	chr9:96026018-96026303(+)$1	285	183	213	14.0209
GGGAGGGUCUCUCAAAGUGGGGCUCCGAGC	chr19:18653565-18653856(-)$1	291	112	142	15.7617
AGGCCGAGGCUGAGCAAGAGCAUUGGGCGG	chr17:48546066-48546341(+)$1	275	73	103	13.4024
GAUAAACUGACCAUCAUCUCAGGAUGUCUC	chr16:22019511-22019740(+)$1	229	114	144	10.3320
GGGACGUGUCGACCCCUCCGACCGUGCUUC	chr11:2154646-2154848(-)$1	202	70	100	14.8469
GGCCUGCAUGGGGUGGGGCUGUGGGGCACG	chr9:139904716-139905006(-)$1	290	50	80	14.7023
UGCCAAUCCUGGGAGUGGGGGAGUGGGAUC	chr16:4744294-4744564(+)$1	270	187	217	10.3470
AACUUCCCCAGAUACCCCGUGGGCAAGUUC	chr11:2154342-2154547(-)$1	205	97	127	13.7057
UACGGCGCGGCGGCAGCAGCCGGGCCAGGA	chr17:7232371-7232700(-)$1	329	245	275	14.6711
GGGACGUGUCGACCCCUCCGACCGUGCUUC	chr11:2154657-2154862(-)$1	205	84	114	14.8469
GGGAGUAGGUCUUGGGAAUGGCCUCCGUCU	chr22:37904893-37905151(-)$1	258	94	124	10.1444
GGGGUGGGGGCGAGAUCAGGCUCCGACCCC	chr17:58469168-58469454(-)$1	286	102	132	10.6118
AACUUCCCCAGAUACCCCGUGGGCAAGUUC	chr11:2154350-2154553(-)$1	203	103	133	13.7057
GGGACGUGUCGACCCCUCCGACCGUGCUUC	chr11:2154651-2154857(-)$1	206	79	109	14.8469
ACUGGGGAUUAAACAAAUAUUUACAGGCAG	chr19:49843454-49843707(-)$1	253	34	64	12.8111
Agguggggcgcgagcgcggcgccgcacagg	chr7:766562-766860(-)$1	298	12	42	11.7133

#DB
(.(((((((.........))).)))).)).	chr19:14203529-14203789(-)$1	1	33	63	10.6902
.((....(((.(.........).)))...)	chr5:180651183-180651430(+)$1	1	188	218	10.7558
.((((((((((........)))))))....	chr16:69165156-69165419(-)$1	1	222	252	10.0060
(((((.(((((.......))))).))))).	chr11:61197014-61197365(-)$1	1	7	37	15.5392
((((...((((.......))))))).))))	chr8:145016484-145016764(-)$1	1	135	165	14.8919
((.(((.((((.......))))))).))))	chr11:2154676-2154880(-)$1	1	102	132	14.8469
((.((.(((((.......))))).)).)))	chr16:29818189-29818441(-)$1	1	15	45	14.8685
(((((.(((((.......))))).))))).	chr11:61197165-61197469(-)$1	1	111	141	14.6323
(((((((.(((.......))).))))....	chrX:48761795-48762085(-)$1	1	231	261	12.9219
(((((.(((((........))))).)))))	chr17:58469092-58469368(-)$1	1	16	46	10.6118
(((....((((........))))...))))	chr12:122185998-122186340(+)$1	1	271	301	10.5376
((((.((((((.......))))).).))))	chr16:4664477-4664729(-)$1	1	104	134	15.0295
((.((.(((((.......))))).))..))	chr4:667804-668112(+)$1	1	257	287	13.6635
(...(((((((.......))))))))))))	chr1:36788393-36788683(+)$1	1	229	259	13.4533
((.((((((.........)))))))).)))	chr1:1363011-1363242(+)$1	1	192	222	10.5083
.(.(((((.((.........)).)))..))	chr22:20110050-20110328(+)$1	1	154	184	10.7516
..((((.((((.......))))...)))).	chrX:102840512-102840872(+)$1	1	58	88	14.5550
.(.(((((((........)))))))...).	chr2:242755212-242755478(+)$1	1	135	165	10.0583
((.((.((.((.......)).)).)).)).	chr7:65338182-65338467(+)$1	1	48	78	10.8399
((((..((.((.......)).))..)))))	chr19:10222219-10222520(+)$1	1	114	144	12.1218
((((.(.((((.......)))).).)))))	chr11:208941-209281(+)$1	1	140	170	14.6857
((..((..(((.......)))..))..)))	chr7:77166708-77166978(+)$1	1	66	96	12.5618
((((((..(((.......))))))))))))	chr17:17726765-17727010(-)$1	1	76	106	14.0187
(((.(((((.(........).))))).)))	chr17:48784706-48785039(-)$1	1	13	43	9.8804
(((((.((((.........)))).)))))(	chr11:2154329-2154541(-)$1	1	91	121	13.7057
))(((((((((.......))))))....))	chr11:6632983-6633374(-)$1	1	80	110	13.1346
((.(((((.((.......)).)))))..))	chr4:2819879-2820159(+)$1	1	56	86	13.3191
((((.(((((.........))))).)))).	chr14:24901491-24901781(+)$1	1	161	191	12.5499
..(.(((((((.......))))))).)...	chr2:242447738-242447989(-)$1	1	198	228	14.1037
...(((((((.........)))))))))))	chr17:1359219-1359472(-)$1	1	163	193	12.1644
((((.(((.((.......))...)))))))	chr8:145738788-145739056(+)$1	1	30	60	12.9647
((((.((((((.........)))))).)))	chr19:47731322-47731591(-)$1	1	133	163	11.7322
(((((.((((.........)))).)))))(	chr11:2154311-2154529(-)$1	1	79	109	13.7057
(((((..((((.......)))).))))).)	chr8:145623238-145623503(-)$1	1	211	241	14.9021
(((((.(((((......)))))))))))))	chr19:1469362-1469635(-)$1	1	104	134	8.5775
(((((((.(.(........).).)))))))	chr2:20423862-20424084(-)$1	1	17	47	9.9185
..(((.(((((......))))).)))..))	chr16:88798214-88798471(+)$1	1	147	177	9.4130
((((..(((.(.......).)))..)))).	chr11:66627295-66627567(-)$1	1	35	65	13.8510
.(((.(((((.........)))))...)))	chr9:96026018-96026303(+)$1	1	183	213	14.0209
.(((..(((((.......)))))))).)))	chr19:18653565-18653856(-)$1	1	112	142	15.7617
..(((.(((((.......))).)).)))..	chr17:48546066-48546341(+)$1	1	73	103	13.4024
((((..((((........))))..))))).	chr16:22019511-22019740(+)$1	1	114	144	10.3320
((.(((.((((.......))))))).))))	chr11:2154646-2154848(-)$1	1	70	100	14.8469
(((((.(((((.......))))))))).).	chr9:139904716-139905006(-)$1	1	50	80	14.7023
(.(((.((((........)))).))).)..	chr16:4744294-4744564(+)$1	1	187	217	10.3470
(((((.((((.........)))).)))))(	chr11:2154342-2154547(-)$1	1	97	127	13.7057
.(((((.((((.......)))).)))....	chr17:7232371-7232700(-)$1	1	245	275	14.6711
((.(((.((((.......))))))).))))	chr11:2154657-2154862(-)$1	1	84	114	14.8469
(((.(.(((((........))))).).)))	chr22:37904893-37905151(-)$1	1	94	124	10.1444
(((((.(((((........))))).)))))	chr17:58469168-58469454(-)$1	1	102	132	10.6118
(((((.((((.........)))).)))))(	chr11:2154350-2154553(-)$1	1	103	133	13.7057
((.(((.((((.......))))))).))))	chr11:2154651-2154857(-)$1	1	79	109	14.8469
.(((..(((.........)))..)))...)	chr19:49843454-49843707(-)$1	1	34	64	12.8111
..(((.(((((.......))))).)))..(	chr7:766562-766860(-)$1	1	12	42	11.7133

#PSSM
e : 0.24	d : 0.22	[ : 0.09	b : 0.07	g : 0.07	" : 0.05	! : 0.05	c : 0.03	a : 0.03	h : 0.01	$ : 0.01	= : 0.01	# : 0.01	f : 0.01	: : 0.01	
e : 0.24	d : 0.22	c : 0.12	b : 0.09	g : 0.05	! : 0.05	[ : 0.03	" : 0.03	a : 0.03	h : 0.01	$ : 0.01	= : 0.01	f : 0.01	: : 0.01	
e : 0.22	c : 0.20	[ : 0.20	d : 0.14	g : 0.05	b : 0.03	h : 0.01	" : 0.01	! : 0.01	a : 0.01	$ : 0.01	= : 0.01	f : 0.01	
c : 0.27	e : 0.22	d : 0.16	g : 0.09	b : 0.07	[ : 0.05	# : 0.03	" : 0.01	f : 0.01	! : 0.01	= : 0.01	
e : 0.18	c : 0.18	g : 0.14	[ : 0.11	b : 0.09	! : 0.09	d : 0.07	# : 0.03	" : 0.01	f : 0.01	= : 0.01	a : 0.01	
[ : 0.33	c : 0.12	g : 0.11	! : 0.11	e : 0.07	d : 0.05	f : 0.05	# : 0.03	a : 0.03	" : 0.01	b : 0.01	= : 0.01	
e : 0.31	[ : 0.12	d : 0.12	c : 0.09	g : 0.09	f : 0.05	b : 0.05	! : 0.05	# : 0.03	" : 0.01	= : 0.01	
e : 0.31	d : 0.29	c : 0.11	g : 0.09	f : 0.05	b : 0.05	[ : 0.03	! : 0.03	
e : 0.29	d : 0.29	c : 0.14	g : 0.09	[ : 0.09	f : 0.05	a : 0.01	
d : 0.29	e : 0.27	c : 0.09	g : 0.09	b : 0.09	r : 0.05	[ : 0.05	f : 0.03	
e : 0.24	r : 0.18	d : 0.18	b : 0.09	c : 0.07	g : 0.05	q : 0.05	a : 0.05	f : 0.03	[ : 0.01	
p : 0.53	r : 0.22	q : 0.18	o : 0.03	a : 0.01	
p : 0.53	r : 0.24	q : 0.18	o : 0.03	
p : 0.53	r : 0.24	q : 0.18	o : 0.03	
p : 0.53	r : 0.24	q : 0.18	o : 0.03	
p : 0.53	r : 0.24	q : 0.18	o : 0.03	
p : 0.53	r : 0.24	q : 0.18	o : 0.03	
p : 0.53	r : 0.24	q : 0.18	e : 0.03	
d : 0.20	r : 0.18	e : 0.18	q : 0.12	c : 0.11	b : 0.07	g : 0.05	f : 0.03	a : 0.01	
d : 0.29	e : 0.27	c : 0.11	g : 0.09	b : 0.07	r : 0.05	f : 0.03	a : 0.03	] : 0.01	
d : 0.29	e : 0.27	c : 0.12	g : 0.09	] : 0.09	f : 0.05	r : 0.01	b : 0.01	3 : 0.01	
e : 0.31	d : 0.29	g : 0.11	] : 0.05	f : 0.05	b : 0.05	a : 0.03	2 : 0.03	3 : 0.01	c : 0.01	
e : 0.29	] : 0.14	d : 0.12	g : 0.11	c : 0.11	f : 0.05	b : 0.05	2 : 0.05	3 : 0.03	
c : 0.24	] : 0.20	e : 0.16	g : 0.11	d : 0.05	f : 0.05	2 : 0.05	3 : 0.03	b : 0.03	a : 0.01	= : 0.01	
c : 0.25	e : 0.20	g : 0.11	] : 0.11	b : 0.09	d : 0.05	3 : 0.05	2 : 0.03	a : 0.01	4 : 0.01	f : 0.01	= : 0.01	
e : 0.22	c : 0.18	d : 0.12	] : 0.12	g : 0.11	b : 0.07	3 : 0.05	2 : 0.01	4 : 0.01	f : 0.01	= : 0.01	a : 0.01	
e : 0.22	d : 0.22	] : 0.16	2 : 0.09	3 : 0.07	4 : 0.07	g : 0.07	c : 0.03	a : 0.01	= : 0.01	
e : 0.25	d : 0.22	4 : 0.09	g : 0.07	2 : 0.07	c : 0.07	3 : 0.05	b : 0.03	f : 0.03	= : 0.01	] : 0.01	a : 0.01	: : 0.01	
d : 0.25	e : 0.24	c : 0.09	b : 0.07	4 : 0.07	3 : 0.05	g : 0.05	a : 0.03	f : 0.03	] : 0.01	= : 0.01	2 : 0.01	: : 0.01	
d : 0.20	] : 0.11	e : 0.11	c : 0.11	f : 0.11	b : 0.07	4 : 0.07	g : 0.05	: : 0.03	3 : 0.03	> : 0.01	= : 0.01	2 : 0.01	a : 0.01	

#score	686.9451125859423
#seq	54
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF756RYJ_AARS_transcript_m1_run1.txt

#BEAR
"""ddddqqqqqqqqdddd22dd	chr8:9629645-9629943(+)$1	298	152	175	13.4537
hhh[cccqqqqqqqqccc]hhhh	chr19:2270126-2270396(+)$1	270	10	33	12.2881
ggggg[aqqqqqqqqa]gggggg	chrM:3094-3320(+)$1	226	85	108	13.4085
[abb[aqqqqqqqqabb]a]ddd	chr8:1781377-1781675(+)$1	298	258	281	11.8425
iii[cccqqqqqqqqccciiiii	chr11:65192395-65192685(+)$1	290	177	200	13.3027
gggggggrrrrrrrrrggggggg	chr6:133136353-133136616(+)$1	263	32	55	8.7437
dd[ddddqqqqqqqqdddd]ddd	chr19:893460-893689(+)$1	229	140	163	13.5363
ee[bbssssssssssbb22eeee	chr13:92000500-92000833(+)$1	333	174	197	8.8958
d!!cccssssssssssccc]ddd	chrM:14252-14476(-)$1	224	179	202	11.9169
[dddd[aqqqqqqqqa]dddddd	chr11:65192485-65192764(+)$1	279	143	166	13.4661
####cccqqqqqqqqccc333dd	chrM:14276-14505(-)$1	229	203	226	14.0918
ggggg[aqqqqqqqqa]gggggg	chrM:3084-3294(+)$1	210	95	118	13.4085
d!!cccssssssssssccc]ddd	chr11:62622020-62622237(-)$1	217	9	32	11.9169
:ccc[cccqqqqqqqqccc]ccc	chrM:488-714(+)$1	226	178	201	11.3744
!!eeeeeqqqqqqqqeeeee22e	chr3:160232598-160232823(-)$1	225	181	204	12.7766
geeeeesssssssssseeeee22	chr5:134260103-134260386(+)$1	283	60	83	9.8893
dd[a!!aqqqqqqqqa22a]ddd	chr19:45981777-45982012(-)$1	235	191	214	14.2660
dddd[bbqqqqqqqqbb22dddd	chr13:92000349-92000630(+)$1	281	58	81	12.0675
:ccc[cccqqqqqqqqccc]ccc	chrM:516-725(+)$1	209	150	173	11.3744
c!!cccwwwwwwwwwwwwwwccc	chr6:31698285-31698537(-)$1	252	69	92	11.2943
iiiddddqqqqqqqqdddd22ii	chrM:14366-14602(-)$1	236	70	93	12.8301
!eeeeesssssssssseeeee22	chr11:93454755-93454985(+)$1	230	198	221	10.1086
dd[a!!aqqqqqqqqa22a]ddd	chr19:45981755-45981977(-)$1	222	156	179	14.2660
!!eeeeeqqqqqqqqeeeee22b	chr7:98479393-98479606(+)$1	213	15	38	12.5126
"""ddddqqqqqqqqddddccc5	chr9:100777607-100777855(+)$1	248	118	141	12.1632
eeeeerrrrrrrrreeeee]ddd	chr2:97559879-97560127(-)$1	248	193	216	8.0471

#otherMatches

#Seq PSSM
agaaaggggacaaugccuugacc	chr8:9629645-9629943(+)$1	298	152	175	13.4537
UUUGCGGGGCGCAGACUGGGAAU	chr19:2270126-2270396(+)$1	270	10	33	12.2881
GAUAUCAUCUCAACUUAGUAUUA	chrM:3094-3320(+)$1	226	85	108	13.4085
agagacaggggcagGCUACAGCC	chr8:1781377-1781675(+)$1	298	258	281	11.8425
AAUUAAUAAUAGUAAGUUGUUAG	chr11:65192395-65192685(+)$1	290	177	200	13.3027
AGCCCACUUAAAAUGUGUGGGUU	chr6:133136353-133136616(+)$1	263	32	55	8.7437
ccauuuucccucccagaaacgga	chr19:893460-893689(+)$1	229	140	163	13.5363
GCGGCGGCACAUGGGGCAGGCCG	chr13:92000500-92000833(+)$1	333	174	197	8.8958
UUAUGAAGGAGAGGGGUCAGGGU	chrM:14252-14476(-)$1	224	179	202	11.9169
UGCUUAGAAACUUUCCAAAGUGC	chr11:65192485-65192764(+)$1	279	143	166	13.4661
AUAAUUUAUGAAGGAGAGGGGUC	chrM:14276-14505(-)$1	229	203	226	14.0918
GAUAUCAUCUCAACUUAGUAUUA	chrM:3084-3294(+)$1	210	95	118	13.4085
CGGUACUACAGUUCUUGUAAGGG	chr11:62622020-62622237(-)$1	217	9	32	11.9169
CCUUUCUAUUAGCUCUUAGUAAG	chrM:488-714(+)$1	226	178	201	11.3744
UAGUUAUCUAUGAUUAUAACGCG	chr3:160232598-160232823(-)$1	225	181	204	12.7766
UUUAAUAGUGUGGGAAGUUGAAU	chr5:134260103-134260386(+)$1	283	60	83	9.8893
GGACUUCUUUUGCUUGUUGCCCG	chr19:45981777-45982012(-)$1	235	191	214	14.2660
ggccggcggaggggggcagggcc	chr13:92000349-92000630(+)$1	281	58	81	12.0675
CCUUUCUAUUAGCUCUUAGUAAG	chrM:516-725(+)$1	209	150	173	11.3744
UGAGGGAAAGAAAUGGGGGGCCU	chr6:31698285-31698537(-)$1	252	69	92	11.2943
GAGGUUAUAUGGGUUUAAUAGUU	chrM:14366-14602(-)$1	236	70	93	12.8301
AUCAUUUCUGGGCAAUGAUGAAA	chr11:93454755-93454985(+)$1	230	198	221	10.1086
GGACUUCUUUUGCUUGUUGCCCG	chr19:45981755-45981977(-)$1	222	156	179	14.2660
CGUGUAUGUCUGGGAGUACAAAU	chr7:98479393-98479606(+)$1	213	15	38	12.5126
CCUGCAGAAACAGAACUGUUCAG	chr9:100777607-100777855(+)$1	248	118	141	12.1632
UUCAUAAGGUAGAGGUGGGUCUG	chr2:97559879-97560127(-)$1	248	193	216	8.0471

#DB
...((((........))))..))	chr8:9629645-9629943(+)$1	1	152	175	13.4537
(((.(((........))).))))	chr19:2270126-2270396(+)$1	1	10	33	12.2881
(((((.(........).))))))	chrM:3094-3320(+)$1	1	85	108	13.4085
.(((.(........))).).)))	chr8:1781377-1781675(+)$1	1	258	281	11.8425
(((.(((........))))))))	chr11:65192395-65192685(+)$1	1	177	200	13.3027
(((((((.........)))))))	chr6:133136353-133136616(+)$1	1	32	55	8.7437
((.((((........)))).)))	chr19:893460-893689(+)$1	1	140	163	13.5363
((.((..........))..))))	chr13:92000500-92000833(+)$1	1	174	197	8.8958
(..(((..........))).)))	chrM:14252-14476(-)$1	1	179	202	11.9169
.((((.(........).))))))	chr11:65192485-65192764(+)$1	1	143	166	13.4661
....(((........)))...))	chrM:14276-14505(-)$1	1	203	226	14.0918
(((((.(........).))))))	chrM:3084-3294(+)$1	1	95	118	13.4085
(..(((..........))).)))	chr11:62622020-62622237(-)$1	1	9	32	11.9169
.(((.(((........))).)))	chrM:488-714(+)$1	1	178	201	11.3744
..(((((........)))))..)	chr3:160232598-160232823(-)$1	1	181	204	12.7766
((((((..........)))))..	chr5:134260103-134260386(+)$1	1	60	83	9.8893
((.(..(........)..).)))	chr19:45981777-45982012(-)$1	1	191	214	14.2660
((((.((........))..))))	chr13:92000349-92000630(+)$1	1	58	81	12.0675
.(((.(((........))).)))	chrM:516-725(+)$1	1	150	173	11.3744
(..(((..............)))	chr6:31698285-31698537(-)$1	1	69	92	11.2943
(((((((........))))..))	chrM:14366-14602(-)$1	1	70	93	12.8301
.(((((..........)))))..	chr11:93454755-93454985(+)$1	1	198	221	10.1086
((.(..(........)..).)))	chr19:45981755-45981977(-)$1	1	156	179	14.2660
..(((((........)))))..)	chr7:98479393-98479606(+)$1	1	15	38	12.5126
...((((........))))))).	chr9:100777607-100777855(+)$1	1	118	141	12.1632
(((((.........))))).)))	chr2:97559879-97560127(-)$1	1	193	216	8.0471

#PSSM
d : 0.23	g : 0.15	! : 0.11	" : 0.07	[ : 0.07	i : 0.07	e : 0.07	: : 0.07	h : 0.03	# : 0.03	c : 0.03	
d : 0.19	! : 0.19	e : 0.15	g : 0.11	" : 0.07	i : 0.07	c : 0.07	h : 0.03	a : 0.03	# : 0.03	
e : 0.19	[ : 0.15	g : 0.11	! : 0.11	" : 0.07	i : 0.07	d : 0.07	c : 0.07	h : 0.03	b : 0.03	# : 0.03	
d : 0.23	c : 0.19	e : 0.19	g : 0.11	[ : 0.07	b : 0.07	a : 0.07	# : 0.03	
c : 0.23	d : 0.19	e : 0.19	[ : 0.15	g : 0.11	! : 0.07	b : 0.03	
c : 0.30	d : 0.15	e : 0.15	[ : 0.11	! : 0.07	a : 0.03	g : 0.03	s : 0.03	b : 0.03	r : 0.03	
c : 0.19	a : 0.19	s : 0.19	d : 0.15	e : 0.07	q : 0.03	g : 0.03	b : 0.03	w : 0.03	r : 0.03	
q : 0.61	s : 0.19	r : 0.07	c : 0.07	w : 0.03	
q : 0.69	s : 0.19	r : 0.07	w : 0.03	
q : 0.69	s : 0.19	r : 0.07	w : 0.03	
q : 0.69	s : 0.19	r : 0.07	w : 0.03	
q : 0.69	s : 0.19	r : 0.07	w : 0.03	
q : 0.69	s : 0.19	r : 0.07	w : 0.03	
q : 0.69	s : 0.19	r : 0.07	w : 0.03	
q : 0.65	s : 0.19	a : 0.03	r : 0.03	w : 0.03	e : 0.03	
a : 0.19	d : 0.15	s : 0.15	c : 0.11	b : 0.11	e : 0.11	q : 0.07	r : 0.03	w : 0.03	
c : 0.26	e : 0.19	d : 0.15	] : 0.11	b : 0.11	2 : 0.07	g : 0.03	w : 0.03	
c : 0.26	d : 0.19	e : 0.19	2 : 0.15	g : 0.11	] : 0.03	w : 0.03	
d : 0.19	e : 0.19	c : 0.15	g : 0.11	a : 0.11	2 : 0.07	] : 0.03	i : 0.03	3 : 0.03	w : 0.03	
] : 0.34	e : 0.19	g : 0.11	2 : 0.07	d : 0.07	h : 0.03	i : 0.03	3 : 0.03	w : 0.03	c : 0.03	
d : 0.34	2 : 0.15	c : 0.15	g : 0.11	e : 0.11	h : 0.03	i : 0.03	3 : 0.03	
d : 0.42	c : 0.15	2 : 0.15	g : 0.11	i : 0.07	h : 0.03	e : 0.03	
d : 0.42	g : 0.11	c : 0.11	i : 0.07	e : 0.07	2 : 0.07	h : 0.03	b : 0.03	5 : 0.03	

#score	313.24276930166144
#seq	26
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_CDS_m1_run2.txt

#BEAR
d[ccc"""bb"""ccclllccc]bb333ccc]ddd	chr17:17720834-17721085(-)$1	251	111	146	12.6828
ddd[ccc[bb[cccaooooooa]ccc]bbccc]dd	chr20:3172239-3172488(-)$1	249	71	106	11.7738
]=====================]ccc333ccc]dd	chr19:50905310-50905631(+)$1	321	121	156	12.1597
iiiiiii!!a!!cccooooooccc22a22iiiiii	chr19:48978137-48978394(+)$1	257	46	81	14.1852
ddd[dddd"""ddddmmmmdddd333dddd333dd	chr8:6566346-6566593(+)$1	247	62	97	11.1439
!iiiiiiiii[a[ccclllccc]aiiiiiiiiigg	chr3:15247998-15248288(+)$1	290	120	155	14.0559
ggggggg!!bb[bbnnnnnbb333bb22ggggggg	chr1:43396149-43396368(-)$1	219	80	115	11.1989
ggggggg"""dddd[annnnna]dddd22gggggg	chr6:35454069-35454358(-)$1	289	129	164	10.7327
hhhhhh[ccc!!cccmmmmccc]ccchhhhhhhh5	chr22:31654325-31654604(+)$1	279	134	169	11.1976
dddd"""bb[eeeeemmmmeeeee]bb4444dddd	chr20:49508411-49508688(-)$1	277	1	36	9.5387
ggggggggggg!!bblllbb]ggggggg22ggggg	chr9:140347013-140347254(-)$1	241	128	163	11.4598
gg!!ccc"""ddddoooooodddd]ccc22ggggg	chr22:20112884-20113126(+)$1	242	80	115	12.2613
d[ccc[bb####cccnnnnnccc333bb]ccc]dd	chr1:36755036-36755288(+)$1	252	66	101	11.8674
gggggg[bb####ccclllccc333bbggggggg:	chr2:182757286-182757556(+)$1	270	150	185	12.2764
gggggg!!ccc[cccoooooocccccc]ggggggg	chr10:3823637-3823884(-)$1	247	200	235	13.3972
gg[eeeeeddddcccmmmmccc]dddd]eeeee]g	chr11:61110205-61110491(+)$1	286	22	57	10.4453
eee[ccc[a!!ddddmmmmdddd22a]ccceeeee	chr1:1019547-1019802(-)$1	255	93	128	11.2474
iiiiiiiii[eeeeemmmmeeeeeiiiiiiiii]b	chr1:193028837-193029097(+)$1	260	6	41	12.0420
cc22==============]ccc333eeeee22ddd	chr17:4800039-4800289(+)$1	250	200	235	9.2066
ccc[cccagggggggmmmmggggggg]a4444ccc	chr6:30569903-30570140(-)$1	237	130	165	12.1636
=======eeeee[bbmmmmbb]eeeee22======	chr7:150020569-150020829(+)$1	260	18	53	11.7147
eeeeeggggggg[bbmmmmbb]ggggggg333eee	chr9:139723832-139724108(+)$1	276	220	255	11.2354
cc!!bb[gggggggammmma]ggggggg]bb]ccc	chr14:104145831-104146092(+)$1	261	78	113	11.8151
""hhhhhhhha[cccooooooccc]a333hhhhhh	chr5:140021294-140021545(+)$1	251	59	94	11.6273
ddddd[ccc!!ddddmmmmdddd4444ccc]dddd	chr7:137569556-137569801(-)$1	245	116	151	11.1405
fffff[ccc[eeeeemmmmeeeeeccc]ffffff2	chr12:107168551-107168822(+)$1	271	68	103	9.2656
b!!dddd[ccc[cccmmmmccc]ccc]dddd22bb	chr17:79532338-79532603(-)$1	265	84	119	11.0233
a[ccc"""gggggggooooooggggggg]ccc]a2	chrX:70469651-70469986(-)$1	335	39	74	12.2374
ccc[iiiiiiiii[abblllbb]a]iiiiiiiii2	chr20:48759844-48760142(-)$1	298	198	233	11.5417
cc!!eeeee"""cccmmmmccc]eeeee]cccbb]	chr16:88877768-88878041(-)$1	273	105	140	12.0795
ggggggbb[a[cccnnnnnccc]a]bb]ggggggg	chr20:34241189-34241487(-)$1	298	84	119	11.9354
ddccc"""gggggggmmmmggggggg333ccc:::	chr5:73931516-73931771(-)$1	255	74	109	10.0692
ggggggg!!bb[bbnnnnnbb333bb22ggggggg	chr1:43396083-43396310(-)$1	227	22	57	11.1989
iiii!!cccddddoooooodddd22ccc4444iii	chr3:42678469-42678741(+)$1	272	149	184	11.3127
!!hhhhhhhh"""ccclllccc22hhhhhhhh333	chr9:97842981-97843250(+)$1	269	7	42	10.9293
gggggccc[bb!!bbmmmmbb]bbccc]ggggggg	chr15:41099389-41099642(-)$1	253	93	128	11.8158
b"""bb$$$$$a[ccclllccc]a4444bb333bb	chr1:78098328-78098595(-)$1	267	81	116	11.0501
==========a[cccmmmmccc]a]==========	chr7:73021517-73021726(-)$1	209	72	107	15.3394
!ggggggg!!ddddoooooodddd]ggggggg22c	chr8:145140339-145140582(+)$1	243	161	196	11.9639
dd!!bbgggggggooooooggggggg22bb22ddd	chr17:40659575-40659821(+)$1	246	8	43	10.3281
ddddccc[bb!!cccnnnnnccc22bbccc]dddd	chr17:42953132-42953415(-)$1	283	1	36	10.5788
ddda[gggggggcccnnnnnccc22ggggggg]a:	chr22:39709025-39709302(-)$1	277	216	251	10.8064
[ggggggg[bb"""ammmma]bbggggggg]bbdd	chr1:1341005-1341257(-)$1	252	174	209	11.3507
cc[a[ccc[ffffffmmmmffffff]ccc]a]ccc	chr14:78227256-78227525(-)$1	269	213	248	10.3406
mddddccc"""ddddmmmmdddd4444ccccccll	chr4:435991-436303(-)$1	312	40	75	10.1907
b"""eeeee"""cccmmmmccceeeee22bb333d	chr1:43212733-43213023(-)$1	290	192	227	11.6756
Jccc[==========mmmm==========22ccce	chr7:5429915-5430156(-)$1	241	67	102	11.8333
===[bb!!dddd[bbmmmmbb]dddd]bb]=====	chr1:8073199-8073439(-)$1	240	161	196	10.7087
===="""dddd[bboooooobb]dddd]=======	chr21:45557104-45557358(+)$1	254	58	93	11.6929
hhh"""ccc"""cccbblllbb]ccc333ccc333	chr16:3117344-3117583(+)$1	239	164	199	11.9872

#otherMatches

#Seq PSSM
CAGCCAUAUCCUCUGAGCCUCaugacagggccggg	chr17:17720834-17721085(-)$1	251	111	146	12.6828
CACUCAGGUAAGCCCUGGAACGUGGCCUGCUGUGU	chr20:3172239-3172488(-)$1	249	71	106	11.7738
UUGGCUGGUCCCAGCUUCUUCCAUCCACAGGCAUG	chr19:50905310-50905631(+)$1	321	121	156	12.1597
GGAGGGCUGGCUCCUGAAGCUGGGUACGUGCCCUC	chr19:48978137-48978394(+)$1	257	46	81	14.1852
GUGAGCCGCCUCCCGCUCCCGGGUCUCGGCGUCCA	chr8:6566346-6566593(+)$1	247	62	97	11.1439
GGCGCUUCGGUCGGAGUUGCUCAGUCGGAGUGCGG	chr3:15247998-15248288(+)$1	290	120	155	14.0559
GGGCAGGAUCUACCUGCCUGGCACGGCCCCUGCCC	chr1:43396149-43396368(-)$1	219	80	115	11.1989
CGGGGGGCGCGGGCGGGACUGCGGCCCUUCCCCCU	chr6:35454069-35454358(-)$1	289	129	164	10.7327
UGACAGUGCUUCCAGUUCCCUGUGGCCUGUUAAUC	chr22:31654325-31654604(+)$1	279	134	169	11.1976
GAGUCAAUGCUAGUAAGACUGCUGACAAAAAGCUC	chr20:49508411-49508688(-)$1	277	1	36	9.5387
CGCCGGCACCCCAGGUCCCCAGGGUGCUGUGGCGC	chr9:140347013-140347254(-)$1	241	128	163	11.4598
CCAAGGGCCCUGGGGACCUGCCUGACUUGGGGCUC	chr22:20112884-20113126(+)$1	242	80	115	12.2613
UUCCCAGAGAGAUCCAAAAAGGAAGAUCGGGGCAA	chr1:36755036-36755288(+)$1	252	66	101	11.8674
GGACGCCGGAGCAGAGCCACUCGGGCCGCGUCCCU	chr2:182757286-182757556(+)$1	270	150	185	12.2764
GUCUUUUUGGAGUUCAGAGUAGAAUCCUAAAGACU	chr10:3823637-3823884(-)$1	247	200	235	13.3972
CUCCUCAGUUGUGAUGAUGGUCAACAACCUGGGUG	chr11:61110205-61110491(+)$1	286	22	57	10.4453
CUGUGGGGUUUCCCAUCUCUGGGCCAGUCCCAGGG	chr1:1019547-1019802(-)$1	255	93	128	11.2474
CAGCGCUGCGCAGGACUUCUCCUGGCGGCGCUGCG	chr1:193028837-193029097(+)$1	260	6	41	12.0420
AGUCAGCCACUACCACUGCCCUGCGCUCCCUUCAG	chr17:4800039-4800289(+)$1	250	200	235	9.2066
GGCAUCAGUGGUGGCAGUGGCCAUCGUCCCCAUGA	chr6:30569903-30570140(-)$1	237	130	165	12.1636
GAGUUGCGCCGGACUUCCCAGCUUGGCCAGUGGCU	chr7:150020569-150020829(+)$1	260	18	53	11.7147
CUCUUGCUGGGCAGCUGUGGCAGCUCAGCCACAAG	chr9:139723832-139724108(+)$1	276	220	255	11.2354
CUCCGGGAGGCGCCCCCAAGUGGCGCUUGCCAGGC	chr14:104145831-104146092(+)$1	261	78	113	11.8151
AACCUUCAUCCGGUCAGUGUGGAUGGUGUGGUGGA	chr5:140021294-140021545(+)$1	251	59	94	11.6273
GUUUCUCAGUCUUCCAAAAGGAAUCUUCUGUGAAA	chr7:137569556-137569801(-)$1	245	116	151	11.1405
GGCCCCGGGCGUGCGGUAUCGCACCCCCGGGCCGC	chr12:107168551-107168822(+)$1	271	68	103	9.2656
CACCCCCUGCCCCGGCACCCCGUGGCUGGGGCCGG	chr17:79532338-79532603(-)$1	265	84	119	11.0233
CAGCGCCCGAUCCCCCAGUCUGGGGAUCCCGCCGA	chrX:70469651-70469986(-)$1	335	39	74	12.2374
GUGUGUGCUUGAGUCCAGUAUGUGCCUUGAGUACC	chr20:48759844-48760142(-)$1	298	198	233	11.5417
CUAGGGCGCUUCCGCCUCUGCGCGCGCCGAGGGCA	chr16:88877768-88878041(-)$1	273	105	140	12.0795
UUUUGUUCAUGUAGUUACCCUAGAAGAUAUGAGAG	chr20:34241189-34241487(-)$1	298	84	119	11.9354
AGGAUGAAAGGCUUGUGUACGAGUCUGCAAUUAAC	chr5:73931516-73931771(-)$1	255	74	109	10.0692
GGGCAGGAUCUACCUGCCUGGCACGGCCCCUGCCC	chr1:43396083-43396310(-)$1	227	22	57	11.1989
AUGAAAUCCUCUUGUGAUAGAGAAAGGAGUUCUCG	chr3:42678469-42678741(+)$1	272	149	184	11.3127
GGUGUGAACUCAUUGUUAAGCACAAGUUCACGAAA	chr9:97842981-97843250(+)$1	269	7	42	10.9293
GAAGGCUGAUCUUGAGAGGUCUGGCGGUCCUUCCU	chr15:41099389-41099642(-)$1	253	93	128	11.8158
GAAAUUAAAAAGGUGAAUGUCAGUGAGGAAGGGCC	chr1:78098328-78098595(-)$1	267	81	116	11.0501
GGGGGAGGGCCAGGGAGGCCCCAGAGCUUUCCUCC	chr7:73021517-73021726(-)$1	209	72	107	15.3394
AGGGGCUGGAUGGCACUGAAGCUGGUAGCCCUGAU	chr8:145140339-145140582(+)$1	243	161	196	11.9639
AGGAGGAUGCUGAGAUUAUUCAGCAUGACCAGCUC	chr17:40659575-40659821(+)$1	246	8	43	10.3281
GUCACUGUGUGCAUCAACAAGAUUGACCGGCUGAU	chr17:42953132-42953415(-)$1	283	1	36	10.5788
GCUGUGGAGACUGGCCCAGAGUCUUGGUCUCCUCU	chr22:39709025-39709302(-)$1	277	216	251	10.8064
gccagaggaucccuggagacugacuucugggcugu	chr1:1341005-1341257(-)$1	252	174	209	11.3507
CCGCCGCUACGACUAGGCCUAGUCGAAGCUGGGGU	chr14:78227256-78227525(-)$1	269	213	248	10.3406
GGAGAGCAAAGUUACAAAUGUGAAGAGUGUGGCAA	chr4:435991-436303(-)$1	312	40	75	10.1907
GAAAGGAGCACUUGGGACACCAGCUCCAACGCCCU	chr1:43212733-43213023(-)$1	290	192	227	11.6756
UGGCACAGGGGCCUUCUGAGAGGCUUCUGGGGCCU	chr7:5429915-5430156(-)$1	241	67	102	11.8333
UCUCCUUAGACCUUGGGGUCAUGGUUCAGCAGAGG	chr1:8073199-8073439(-)$1	240	161	196	10.7087
GAGCGGCUAAAAACCUGUGCGUAUUUGAGCUCCAA	chr21:45557104-45557358(+)$1	254	58	93	11.6929
GGACAAGGAUCCGGCCCUUUGGUGCCAACUCUGCC	chr16:3117344-3117583(+)$1	239	164	199	11.9872

#DB
(.(((...((...(((...))).))...))).)))	chr17:17720834-17721085(-)$1	1	111	146	12.6828
(((.(((.((.((((......).))).))))).))	chr20:3172239-3172488(-)$1	1	71	106	11.7738
.))))))))))))))))))))).)))...))).))	chr19:50905310-50905631(+)$1	1	121	156	12.1597
(((((((..(..(((......)))..)..))))))	chr19:48978137-48978394(+)$1	1	46	81	14.1852
(((.((((...((((....))))...))))...))	chr8:6566346-6566593(+)$1	1	62	97	11.1439
.(((((((((.(.(((...))).))))))))))))	chr3:15247998-15248288(+)$1	1	120	155	14.0559
(((((((..((.((.....))...))..)))))))	chr1:43396149-43396368(-)$1	1	80	115	11.1989
(((((((...((((.(.....).))))..))))))	chr6:35454069-35454358(-)$1	1	129	164	10.7327
((((((.(((..(((....))).))))))))))).	chr22:31654325-31654604(+)$1	1	134	169	11.1976
((((...((.(((((....))))).))....))))	chr20:49508411-49508688(-)$1	1	1	36	9.5387
(((((((((((..((...)).)))))))..)))))	chr9:140347013-140347254(-)$1	1	128	163	11.4598
((..(((...((((......)))).)))..)))))	chr22:20112884-20113126(+)$1	1	80	115	12.2613
(.(((.((....(((.....)))...)).))).))	chr1:36755036-36755288(+)$1	1	66	101	11.8674
((((((.((....(((...)))...))))))))).	chr2:182757286-182757556(+)$1	1	150	185	12.2764
((((((..(((.(((......)))))).)))))))	chr10:3823637-3823884(-)$1	1	200	235	13.3972
((.((((((((((((....))).)))).))))).)	chr11:61110205-61110491(+)$1	1	22	57	10.4453
(((.(((.(..((((....))))..).))))))))	chr1:1019547-1019802(-)$1	1	93	128	11.2474
(((((((((.(((((....)))))))))))))).)	chr1:193028837-193029097(+)$1	1	6	41	12.0420
))..)))))))))))))).)))...)))))..)))	chr17:4800039-4800289(+)$1	1	200	235	9.2066
(((.(((((((((((....))))))).)....)))	chr6:30569903-30570140(-)$1	1	130	165	12.1636
((((((((((((.((....)).)))))..))))))	chr7:150020569-150020829(+)$1	1	18	53	11.7147
((((((((((((.((....)).)))))))...)))	chr9:139723832-139724108(+)$1	1	220	255	11.2354
((..((.((((((((....).))))))).)).)))	chr14:104145831-104146092(+)$1	1	78	113	11.8151
..(((((((((.(((......))).)...))))))	chr5:140021294-140021545(+)$1	1	59	94	11.6273
(((((.(((..((((....))))....))).))))	chr7:137569556-137569801(-)$1	1	116	151	11.1405
(((((.(((.(((((....)))))))).)))))).	chr12:107168551-107168822(+)$1	1	68	103	9.2656
(..((((.(((.(((....))).))).))))..))	chr17:79532338-79532603(-)$1	1	84	119	11.0233
(.(((...(((((((......))))))).))).).	chrX:70469651-70469986(-)$1	1	39	74	12.2374
(((.(((((((((.(((...)).).))))))))).	chr20:48759844-48760142(-)$1	1	198	233	11.5417
((..(((((...(((....))).))))).))))).	chr16:88877768-88878041(-)$1	1	105	140	12.0795
((((((((.(.(((.....))).).)).)))))))	chr20:34241189-34241487(-)$1	1	84	119	11.9354
))(((...(((((((....)))))))...)))...	chr5:73931516-73931771(-)$1	1	74	109	10.0692
(((((((..((.((.....))...))..)))))))	chr1:43396083-43396310(-)$1	1	22	57	11.1989
((((..(((((((......))))..)))....)))	chr3:42678469-42678741(+)$1	1	149	184	11.3127
..((((((((...(((...)))..))))))))...	chr9:97842981-97843250(+)$1	1	7	42	10.9293
((((((((.((..((....)).))))).)))))))	chr15:41099389-41099642(-)$1	1	93	128	11.8158
(...((.....(.(((...))).)....))...))	chr1:78098328-78098595(-)$1	1	81	116	11.0501
(((((((((((.(((....))).).))))))))))	chr7:73021517-73021726(-)$1	1	72	107	15.3394
.(((((((..((((......)))).)))))))..)	chr8:145140339-145140582(+)$1	1	161	196	11.9639
((..(((((((((......)))))))..))..)))	chr17:40659575-40659821(+)$1	1	8	43	10.3281
(((((((.((..(((.....)))..))))).))))	chr17:42953132-42953415(-)$1	1	1	36	10.5788
)))(.((((((((((.....)))..))))))).).	chr22:39709025-39709302(-)$1	1	216	251	10.8064
.(((((((.((...(....).))))))))).))((	chr1:1341005-1341257(-)$1	1	174	209	11.3507
((.(.(((.((((((....)))))).))).).)))	chr14:78227256-78227525(-)$1	1	213	248	10.3406
.))))(((...((((....))))....)))(((..	chr4:435991-436303(-)$1	1	40	75	10.1907
(...(((((...(((....))))))))..))...)	chr1:43212733-43213023(-)$1	1	192	227	11.6756
((((.((((((((((....))))))))))..)))(	chr7:5429915-5430156(-)$1	1	67	102	11.8333
(((.((..((((.((....)).)))).)).)))))	chr1:8073199-8073439(-)$1	1	161	196	10.7087
((((...((((.((......)).)))).)))))))	chr21:45557104-45557358(+)$1	1	58	93	11.6929
(((...(((...(((((...)).)))...)))...	chr16:3117344-3117583(+)$1	1	164	199	11.9872

#PSSM
d : 0.19	g : 0.19	c : 0.12	= : 0.08	i : 0.06	! : 0.06	b : 0.06	h : 0.04	e : 0.04	] : 0.02	" : 0.02	f : 0.02	a : 0.02	[ : 0.02	m : 0.02	J : 0.02	
g : 0.23	d : 0.18	c : 0.14	= : 0.10	i : 0.08	[ : 0.06	" : 0.06	h : 0.04	e : 0.04	! : 0.04	f : 0.02	
g : 0.19	c : 0.14	d : 0.14	= : 0.10	! : 0.10	i : 0.08	h : 0.08	[ : 0.04	e : 0.04	" : 0.04	2 : 0.02	f : 0.02	
g : 0.19	[ : 0.12	c : 0.10	d : 0.10	= : 0.08	i : 0.08	! : 0.08	h : 0.06	" : 0.06	e : 0.04	a : 0.04	2 : 0.02	f : 0.02	
g : 0.19	c : 0.18	= : 0.08	i : 0.08	d : 0.08	e : 0.08	b : 0.08	h : 0.06	" : 0.06	[ : 0.06	f : 0.02	! : 0.02	
g : 0.21	c : 0.16	" : 0.12	= : 0.10	i : 0.08	b : 0.08	h : 0.06	[ : 0.06	e : 0.06	d : 0.04	! : 0.02	
c : 0.23	g : 0.18	" : 0.10	= : 0.10	i : 0.08	[ : 0.06	e : 0.06	d : 0.04	b : 0.04	! : 0.04	h : 0.04	$ : 0.02	
c : 0.16	g : 0.14	" : 0.10	! : 0.10	[ : 0.08	= : 0.08	b : 0.08	e : 0.08	i : 0.06	d : 0.04	h : 0.04	a : 0.02	$ : 0.02	
g : 0.16	c : 0.14	b : 0.10	= : 0.08	! : 0.08	" : 0.08	[ : 0.08	i : 0.06	d : 0.06	e : 0.06	h : 0.04	# : 0.02	a : 0.02	$ : 0.02	
g : 0.16	b : 0.14	" : 0.14	= : 0.08	d : 0.08	c : 0.06	[ : 0.06	! : 0.06	a : 0.04	i : 0.04	# : 0.04	h : 0.04	e : 0.02	$ : 0.02	f : 0.02	
g : 0.16	" : 0.14	d : 0.14	! : 0.10	b : 0.08	e : 0.08	[ : 0.06	= : 0.06	# : 0.04	c : 0.04	a : 0.04	i : 0.02	$ : 0.02	f : 0.02	
d : 0.19	[ : 0.14	g : 0.14	" : 0.12	! : 0.10	e : 0.08	= : 0.06	c : 0.04	a : 0.04	# : 0.04	i : 0.02	f : 0.02	
c : 0.30	d : 0.16	[ : 0.10	g : 0.10	" : 0.06	= : 0.06	b : 0.06	e : 0.06	! : 0.04	# : 0.02	i : 0.02	f : 0.02	
c : 0.40	b : 0.16	d : 0.14	g : 0.08	= : 0.06	e : 0.06	o : 0.04	[ : 0.02	" : 0.02	f : 0.02	
c : 0.36	b : 0.10	o : 0.10	a : 0.08	d : 0.08	= : 0.06	n : 0.06	e : 0.06	g : 0.06	[ : 0.02	f : 0.02	
m : 0.46	o : 0.19	n : 0.12	c : 0.10	= : 0.04	b : 0.04	a : 0.02	l : 0.02	
m : 0.46	o : 0.19	n : 0.14	l : 0.12	= : 0.04	b : 0.04	
m : 0.46	o : 0.19	l : 0.16	n : 0.14	= : 0.04	
m : 0.46	o : 0.19	l : 0.14	n : 0.14	= : 0.02	b : 0.02	] : 0.02	
c : 0.25	o : 0.16	b : 0.14	d : 0.10	n : 0.08	e : 0.06	g : 0.06	= : 0.04	a : 0.04	l : 0.04	f : 0.02	
c : 0.32	b : 0.18	d : 0.14	o : 0.10	e : 0.06	] : 0.06	g : 0.06	= : 0.04	n : 0.02	f : 0.02	
c : 0.38	d : 0.14	g : 0.12	] : 0.08	b : 0.08	e : 0.06	a : 0.04	= : 0.04	3 : 0.04	f : 0.02	
] : 0.30	d : 0.16	g : 0.14	c : 0.12	e : 0.10	3 : 0.08	b : 0.04	2 : 0.02	f : 0.02	= : 0.02	
c : 0.16	g : 0.16	3 : 0.12	d : 0.12	e : 0.12	a : 0.10	2 : 0.10	b : 0.04	4 : 0.04	f : 0.02	= : 0.02	
c : 0.16	g : 0.16	] : 0.14	2 : 0.10	3 : 0.08	d : 0.08	b : 0.06	e : 0.06	4 : 0.06	i : 0.04	h : 0.02	f : 0.02	= : 0.02	
c : 0.19	g : 0.19	b : 0.12	d : 0.08	e : 0.08	3 : 0.06	i : 0.06	4 : 0.06	a : 0.04	= : 0.04	2 : 0.02	h : 0.02	] : 0.02	
g : 0.14	c : 0.12	3 : 0.10	] : 0.10	b : 0.10	d : 0.08	e : 0.08	i : 0.06	2 : 0.06	4 : 0.06	h : 0.04	= : 0.04	a : 0.02	
g : 0.16	2 : 0.14	c : 0.14	] : 0.12	3 : 0.10	b : 0.06	i : 0.06	d : 0.04	h : 0.04	4 : 0.04	e : 0.04	= : 0.04	a : 0.02	
g : 0.19	c : 0.12	2 : 0.12	b : 0.08	3 : 0.08	] : 0.08	i : 0.06	4 : 0.06	= : 0.06	d : 0.04	h : 0.04	e : 0.04	f : 0.02	
c : 0.23	g : 0.19	i : 0.08	b : 0.08	h : 0.06	4 : 0.06	2 : 0.06	= : 0.06	d : 0.04	e : 0.04	] : 0.04	3 : 0.02	f : 0.02	
g : 0.21	c : 0.18	i : 0.08	= : 0.08	3 : 0.06	h : 0.06	4 : 0.06	2 : 0.06	] : 0.06	e : 0.04	b : 0.04	f : 0.02	d : 0.02	a : 0.02	
g : 0.21	c : 0.18	i : 0.08	3 : 0.08	= : 0.08	] : 0.06	h : 0.06	d : 0.06	2 : 0.06	e : 0.04	4 : 0.04	f : 0.02	b : 0.02	
g : 0.18	d : 0.12	] : 0.10	i : 0.10	3 : 0.10	c : 0.10	= : 0.08	e : 0.06	h : 0.04	2 : 0.04	b : 0.04	f : 0.02	: : 0.02	
d : 0.21	g : 0.19	c : 0.08	= : 0.08	i : 0.06	b : 0.06	3 : 0.06	h : 0.04	] : 0.04	e : 0.04	a : 0.04	f : 0.02	: : 0.02	2 : 0.02	l : 0.02	
d : 0.23	g : 0.19	c : 0.08	= : 0.08	: : 0.06	e : 0.06	b : 0.06	2 : 0.06	i : 0.04	3 : 0.04	5 : 0.02	h : 0.02	] : 0.02	l : 0.02	

#score	575.8269607216698
#seq	50
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_transcript_m1_run2.txt

#BEAR
ggggggg!!==========mmmm==========]gggggg	chr4:53578772-53578976(+)$1	204	87	127	22.8680
HHHHH==============nnnnn==============:E	chr11:8706909-8707124(+)$1	215	151	191	20.0587
ggggggg!!==========mmmm==========]gggggg	chr4:53578690-53578925(+)$1	235	169	209	22.8680
bb!!bb[============qqqqqqqq============b	chr11:8705714-8705920(+)$1	206	66	106	20.6138
[a[===========[cccooooooccc]===========a	chr19:5140308-5140540(+)$1	232	188	228	23.5377
nffffff==============lll==============EE	chr1:3238296-3238593(+)$1	297	187	227	20.2826
bb[ccc[============mmmm============]ccc]	chr10:103590471-103590783(-)$1	312	125	165	23.4081
[a"""==============nnnnn==============]a	chr11:8706939-8707142(+)$1	203	121	161	26.6106
dccc$$$$$==========nnnnn==========4444cc	chr11:93465100-93465319(-)$1	219	28	68	22.3481
fiiiiiiiiiiiiiiiiiimmmmiiiiiiiii]iiiiiii	chr19:2336913-2337179(+)$1	266	118	158	21.3552
abb"""iiiiiiiiibbbbmmmmbb]bb]iiiiiiiii33	chr3:131197928-131198132(-)$1	204	64	104	18.9521
[bb"""iiiiiiiii[bboooooobbiiiiiiiii4444b	chr7:45144474-45144679(-)$1	205	118	158	21.6774
"bb!!eeeeeiiiiiiiiinnnnniiiiiiiii333eeee	chr11:75115407-75115627(+)$1	220	104	144	18.7748
[ccc!!==========ssssssssss==========22cc	chr1:155648902-155649142(-)$1	240	178	218	18.8256
[bb!!============ppppppp============]bb2	chr9:130210711-130210921(-)$1	210	85	125	20.2871
[a[bbiiiiiiiii[bboooooobb]iiiiiiiii]bb]a	chr3:41563545-41563829(-)$1	284	50	90	19.5820
d$$$$$============oooooo============4444	chr12:49050423-49050657(-)$1	234	100	140	25.5594
ggggggg!!==========mmmm==========]gggggg	chr4:53578776-53578979(+)$1	203	83	123	22.8680
===================oooooo===============	chr3:194833009-194833286(-)$1	277	113	153	26.0361
[=============[cccooooooccc]============	chr1:76252665-76252874(+)$1	209	23	63	23.3675
gg"""ccc[iiiiiiiiiqqqqqqqqiiiiiiiii333cc	chr14:95999742-95999949(-)$1	207	134	174	18.9073
dccc$$$$$==========nnnnn==========4444cc	chr11:93465097-93465300(-)$1	203	9	49	22.3481
===========####ddddllldddd============]e	chr1:1158210-1158459(-)$1	249	97	137	19.4682
g:==========[eeeeeooooooeeeee==========d	chr14:36231903-36232106(-)$1	203	121	161	19.0465
ffffccc[==========qqqqqqqq==========]ccc	chr1:76255102-76255332(+)$1	230	70	110	19.2161
d$$$$$=============mmmm=============4444	chr12:49061222-49061434(-)$1	212	66	106	25.0388
bb!!bb[============qqqqqqqq============b	chr11:8705691-8705897(+)$1	206	89	129	20.6138
ggggggg!!==========mmmm==========]gggggg	chr4:53578730-53578938(+)$1	208	129	169	22.8680
"a"""==============oooooo==============2	chr2:10586801-10587006(-)$1	205	40	80	26.8202
c[a[a[==============mmmm==============]a	chr17:41623209-41623486(+)$1	277	116	156	25.0142
!!ccc!!===========qqqqqqqq===========22c	chr9:139620514-139620737(-)$1	223	123	163	20.8659
=========:==============bb=============[	chr13:51147584-51147864(+)$1	280	79	119	20.7208
&&&&&&=============mmmm=============7777	chr14:20791285-20791492(-)$1	207	14	54	20.3779
:dddd[bb[==========nnnnn==========]bb]dd	chr18:51748639-51748842(-)$1	203	13	53	19.5258
[a####eeeee!!==========lll==========6666	chr15:60834391-60834714(-)$1	323	188	228	18.6380
===[================mmmm================	chr19:18881500-18881791(+)$1	291	157	197	25.3974
ggggggg"""iiiiiiiiillliiiiiiiii]ggggggg]	chr7:98479278-98479487(+)$1	209	13	53	19.6912
[bb[bbbb[==========nnnnn==========bb]bb]	chr21:46554069-46554317(+)$1	248	109	149	21.4138
gg[bb===============mmmm===============2	chr17:79964205-79964410(+)$1	205	14	54	24.5289
:ggggggg==========oooooo==========333ggg	chr10:101996795-101997012(-)$1	217	122	162	23.0891
[bb!!============ppppppp============22bb	chr12:49048160-49048370(-)$1	210	78	118	19.9161
$$$$$=========="""bbmmmmbb22==========22	chr12:49048149-49048360(-)$1	211	137	177	21.2484
[a"""==============nnnnn==============]a	chr11:8706924-8707126(+)$1	202	136	176	26.6106
==!!bb[============mmmm============]bb22	chrX:118921260-118921465(-)$1	205	93	133	24.0722
]ccc============[bbnnnnnbb]============:	chr12:6619406-6619608(+)$1	202	158	198	21.4490
&&&&&&=============mmmm=============7777	chr14:20791327-20791530(-)$1	203	52	92	20.3779
g####iiiiiiiiicccqqqqqqqqccc]iiiiiiiii44	chrX:54840743-54840949(+)$1	206	66	106	17.6590
[a"""==============nnnnn==============]a	chr11:8706946-8707158(+)$1	212	114	154	26.6106
ggggggg!!==========mmmm==========]gggggg	chr4:53578757-53578961(+)$1	204	102	142	22.8680
%cccbb"""==========mmmm==========333bb]c	chrX:20154385-20154598(-)$1	213	66	106	21.9910
===========[gggggggooooooggggggg]=======	chr17:7016633-7016900(-)$1	267	25	65	20.8970
$$$$$=========="""bbmmmmbb22==========22	chr12:49048105-49048314(-)$1	209	91	131	21.2484
==!!bb[============mmmm============]bb22	chrX:118921215-118921439(-)$1	224	67	107	24.0722

#otherMatches

#Seq PSSM
gcggcccggggggcgggcggcggugcccgucccggggcUG	chr4:53578772-53578976(+)$1	204	87	127	22.8680
UGAUUCACUGGUGGGGGCAGUCGGUGCCCCCGUUAGUGCC	chr11:8706909-8707124(+)$1	215	151	191	20.0587
gcggcccggggggcgggcggcggugcccgucccggggcUG	chr4:53578690-53578925(+)$1	235	169	209	22.8680
CUAGAGUCACGCUUGGGUAUCGGCUAUUGCCUGAGUGUGC	chr11:8705714-8705920(+)$1	206	66	106	20.6138
agcacuuugggaggccgaggcgggucgaucuccugagguc	chr19:5140308-5140540(+)$1	232	188	228	23.5377
GGCACACAUAUGCGUGUAUGUUUGGCAUGCAUGUAUGUAC	chr1:3238296-3238593(+)$1	297	187	227	20.2826
gccugugcguguguaugugugugcaugugcgcgcgagcgu	chr10:103590471-103590783(-)$1	312	125	165	23.4081
UGAUUCACUGGUGGGGGCAGUCGGUGCCCCCGUUAGUGCC	chr11:8706939-8707142(+)$1	203	121	161	26.6106
UCUAGAGAAUGGGCACUGUUGAUCAUGGUGUCCAAAAAUA	chr11:93465100-93465319(-)$1	219	28	68	22.3481
uguCUUGGCUUCAGGGGCUGUGAGGCCCCUGAGAGUUGGG	chr19:2336913-2337179(+)$1	266	118	158	21.3552
CGUAGACCUUGCCUGACUGUGCUCAUGUCCAGGCAGGGGG	chr3:131197928-131198132(-)$1	204	64	104	18.9521
CAUGGGCCCUGGGUCACCUACCCUGGGACCUGGGGAUAAG	chr7:45144474-45144679(-)$1	205	118	158	21.6774
UGGUCCUUGUCAGUGCCAUGUUCUGUGGUGCUGUGCACGA	chr11:75115407-75115627(+)$1	220	104	144	18.7748
AUAUCCACUUCUCCGGGUGAGUGGUGCUGGAGAGGUAUGU	chr1:155648902-155649142(-)$1	240	178	218	18.8256
AGGAAACAGGGUUGUUCUUCAUGUGGAUGACUCUGUGCCG	chr9:130210711-130210921(-)$1	210	85	125	20.2871
augcaccuguaaucccaacugcaugagauuacagguuggg	chr3:41563545-41563829(-)$1	284	50	90	19.5820
GAAUCAAGACCAAUGGUUUGCUGUAGCUGUUGGUUUCAAA	chr12:49050423-49050657(-)$1	234	100	140	25.5594
gcggcccggggggcgggcggcggugcccgucccggggcUG	chr4:53578776-53578979(+)$1	203	83	123	22.8680
ugcgugcgugugugugcaugugugugugugCGCGCACGUG	chr3:194833009-194833286(-)$1	277	113	153	26.0361
GUGUUUAUUUUUUACUUAUCUUUUUGAAUGAAAAGUGAAC	chr1:76252665-76252874(+)$1	209	23	63	23.3675
UGCCACGGUGAUAAUGACUGGGCUAUGUCAUUAUCUAUCC	chr14:95999742-95999949(-)$1	207	134	174	18.9073
UCUAGAGAAUGGGCACUGUUGAUCAUGGUGUCCAAAAAUA	chr11:93465097-93465300(-)$1	203	9	49	22.3481
gugcuuguacgugugugcgugucguguguacgagugcgcu	chr1:1158210-1158459(-)$1	249	97	137	19.4682
UAUUUAAAAUCAUAUUUUCUUUUCAGGAUUGAUUUUAAAG	chr14:36231903-36232106(-)$1	203	121	161	19.0465
UAAUGGCAUGUAUUAGCUGAAUCUAAAGUUGAUGUGAGUU	chr1:76255102-76255332(+)$1	230	70	110	19.2161
GAAUCAAGGCCAGCAGUUUGCUGAAGCUGUUGGUUUCAAG	chr12:49061222-49061434(-)$1	212	66	106	25.0388
CUAGAGUCACGCUUGGGUAUCGGCUAUUGCCUGAGUGUGC	chr11:8705691-8705897(+)$1	206	89	129	20.6138
gcggcccggggggcgggcggcggugcccgucccggggcUG	chr4:53578730-53578938(+)$1	208	129	169	22.8680
UGGAUUUAUGACAGGCCCGUCACCCUGGGCCUGUCAUAGU	chr2:10586801-10587006(-)$1	205	40	80	26.8202
uguguguguguguguguguguguACGCGCGCGCGCGCGGA	chr17:41623209-41623486(+)$1	277	116	156	25.0142
UUCUACACUCAGUGCUCGGGAACCAGUGGGCACUGAGAAU	chr9:139620514-139620737(-)$1	223	123	163	20.8659
UGGGUGUACAUACAUGUGGGUGUAGCugugugugugcacu	chr13:51147584-51147864(+)$1	280	79	119	20.7208
UGUUCCUCUCACUGCUUGAAGCCUUAGGCAGUGGGAUUUU	chr14:20791285-20791492(-)$1	207	14	54	20.3779
UAUUUCCUCAUCAUUAAAUAUUUGAUUUAAUGGUAAGAAA	chr18:51748639-51748842(-)$1	203	13	53	19.5258
gugugugugccuguguUACCAUUUAAGAUGGUAGCAGCUA	chr15:60834391-60834714(-)$1	323	188	228	18.6380
gugggugugggugugcaugcguggguguguacauuugugu	chr19:18881500-18881791(+)$1	291	157	197	25.3974
UCAUUUUCCUUUUCUCUACCUUGUAGAGAAGCAAAGUGAU	chr7:98479278-98479487(+)$1	209	13	53	19.6912
GACAGUGGUGUGUGCACCCGACGGGGGUGUGUGCCCGACA	chr21:46554069-46554317(+)$1	248	109	149	21.4138
cagguguguguguauaugcaugucugugugugcacauaug	chr17:79964205-79964410(+)$1	205	14	54	24.5289
AGUCCUUACAGACAGGCUGACACAGGCUUGUCUGGCCUGA	chr10:101996795-101997012(-)$1	217	122	162	23.0891
ACUGAAGACCAGCAGUUGUACUGUGGCUGUUGGUUUCAAG	chr12:49048160-49048370(-)$1	210	78	118	19.9161
UCUGUUGGCUGUUCUGGGACCUCAGUAGGGAAUGGCUAUU	chr12:49048149-49048360(-)$1	211	137	177	21.2484
UGAUUCACUGGUGGGGGCAGUCGGUGCCCCCGUUAGUGCC	chr11:8706924-8707126(+)$1	202	136	176	26.6106
UCAUUUUUGAUUUUGCCUUUAUGAGGGUAAAAUCAUGACA	chrX:118921260-118921465(-)$1	205	93	133	24.0722
AUUCUUCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAGU	chr12:6619406-6619608(+)$1	202	158	198	21.4490
UGUUCCUCUCACUGCUUGAAGCCUUAGGCAGUGGGAUUUU	chr14:20791327-20791530(-)$1	203	52	92	20.3779
GCUCAGAGCAGGGGGCCCAAAGAAUGGCUCCUCUGUUUAC	chrX:54840743-54840949(+)$1	206	66	106	17.6590
UGAUUCACUGGUGGGGGCAGUCGGUGCCCCCGUUAGUGCC	chr11:8706946-8707158(+)$1	212	114	154	26.6106
gcggcccggggggcgggcggcggugcccgucccggggcUG	chr4:53578757-53578961(+)$1	204	102	142	22.8680
AUUCUCUGAGAUCUGCUUUUACUGAAGUGGAUCAAUGAUG	chrX:20154385-20154598(-)$1	213	66	106	21.9910
guguauguauguuguguaugaguguguguauguugugugu	chr17:7016633-7016900(-)$1	267	25	65	20.8970
UCUGUUGGCUGUUCUGGGACCUCAGUAGGGAAUGGCUAUU	chr12:49048105-49048314(-)$1	209	91	131	21.2484
UCAUUUUUGAUUUUGCCUUUAUGAGGGUAAAAUCAUGACA	chrX:118921215-118921439(-)$1	224	67	107	24.0722

#DB
(((((((..((((((((((....)))))))))).))))))	chr4:53578772-53578976(+)$1	1	87	127	22.8680
)))))((((((((((((((.....)))))))))))))).)	chr11:8706909-8707124(+)$1	1	151	191	20.0587
(((((((..((((((((((....)))))))))).))))))	chr4:53578690-53578925(+)$1	1	169	209	22.8680
((..((.((((((((((((........)))))))))))))	chr11:8705714-8705920(+)$1	1	66	106	20.6138
.(.(((((((((((.(((......))).))))))))))))	chr19:5140308-5140540(+)$1	1	188	228	23.5377
.))))))((((((((((((((...))))))))))))))))	chr1:3238296-3238593(+)$1	1	187	227	20.2826
((.(((.((((((((((((....)))))))))))).))).	chr10:103590471-103590783(-)$1	1	125	165	23.4081
.(...((((((((((((((.....)))))))))))))).)	chr11:8706939-8707142(+)$1	1	121	161	26.6106
((((.....((((((((((.....))))))))))....))	chr11:93465100-93465319(-)$1	1	28	68	22.3481
(((((((((((((((((((....))))))))).)))))))	chr19:2336913-2337179(+)$1	1	118	158	21.3552
(((...(((((((((((((....)).)).)))))))))..	chr3:131197928-131198132(-)$1	1	64	104	18.9521
.((...(((((((((.((......)))))))))))....)	chr7:45144474-45144679(-)$1	1	118	158	21.6774
.((..((((((((((((((.....)))))))))...))))	chr11:75115407-75115627(+)$1	1	104	144	18.7748
.(((..((((((((((..........))))))))))..))	chr1:155648902-155649142(-)$1	1	178	218	18.8256
.((..((((((((((((.......)))))))))))).)).	chr9:130210711-130210921(-)$1	1	85	125	20.2871
.(.(((((((((((.((......)).))))))))).)).)	chr3:41563545-41563829(-)$1	1	50	90	19.5820
(.....((((((((((((......))))))))))))....	chr12:49050423-49050657(-)$1	1	100	140	25.5594
(((((((..((((((((((....)))))))))).))))))	chr4:53578776-53578979(+)$1	1	83	123	22.8680
(((((((((((((((((((......)))))))))))))))	chr3:194833009-194833286(-)$1	1	113	153	26.0361
.(((((((((((((.(((......))).))))))))))))	chr1:76252665-76252874(+)$1	1	23	63	23.3675
((...(((.(((((((((........)))))))))...))	chr14:95999742-95999949(-)$1	1	134	174	18.9073
((((.....((((((((((.....))))))))))....))	chr11:93465097-93465300(-)$1	1	9	49	22.3481
(((((((((((....((((...)))))))))))))))).)	chr1:1158210-1158459(-)$1	1	97	137	19.4682
).((((((((((.(((((......)))))))))))))))(	chr14:36231903-36232106(-)$1	1	121	161	19.0465
(((((((.((((((((((........)))))))))).)))	chr1:76255102-76255332(+)$1	1	70	110	19.2161
(.....(((((((((((((....)))))))))))))....	chr12:49061222-49061434(-)$1	1	66	106	25.0388
((..((.((((((((((((........)))))))))))))	chr11:8705691-8705897(+)$1	1	89	129	20.6138
(((((((..((((((((((....)))))))))).))))))	chr4:53578730-53578938(+)$1	1	129	169	22.8680
.(...((((((((((((((......)))))))))))))).	chr2:10586801-10587006(-)$1	1	40	80	26.8202
(.(.(.((((((((((((((....)))))))))))))).)	chr17:41623209-41623486(+)$1	1	116	156	25.0142
..(((..(((((((((((........)))))))))))..)	chr9:139620514-139620737(-)$1	1	123	163	20.8659
))))))))).(((((((((((((((((((((((((((((.	chr13:51147584-51147864(+)$1	1	79	119	20.7208
......(((((((((((((....)))))))))))))....	chr14:20791285-20791492(-)$1	1	14	54	20.3779
.((((.((.((((((((((.....)))))))))).)).))	chr18:51748639-51748842(-)$1	1	13	53	19.5258
.(....(((((..((((((((((...))))))))))....	chr15:60834391-60834714(-)$1	1	188	228	18.6380
(((.((((((((((((((((....))))))))))))))))	chr19:18881500-18881791(+)$1	1	157	197	25.3974
(((((((...(((((((((...))))))))).))))))).	chr7:98479278-98479487(+)$1	1	13	53	19.6912
.((.((((.((((((((((.....)))))))))))).)).	chr21:46554069-46554317(+)$1	1	109	149	21.4138
((.(((((((((((((((((....))))))))))))))).	chr17:79964205-79964410(+)$1	1	14	54	24.5289
.(((((((((((((((((......))))))))))...)))	chr10:101996795-101997012(-)$1	1	122	162	23.0891
.((..((((((((((((.......))))))))))))..))	chr12:49048160-49048370(-)$1	1	78	118	19.9161
.....((((((((((...((....))..))))))))))..	chr12:49048149-49048360(-)$1	1	137	177	21.2484
.(...((((((((((((((.....)))))))))))))).)	chr11:8706924-8707126(+)$1	1	136	176	26.6106
((..((.((((((((((((....)))))))))))).))..	chrX:118921260-118921465(-)$1	1	93	133	24.0722
.)))((((((((((((.((.....)).)))))))))))).	chr12:6619406-6619608(+)$1	1	158	198	21.4490
......(((((((((((((....)))))))))))))....	chr14:20791327-20791530(-)$1	1	52	92	20.3779
(....((((((((((((........))).)))))))))..	chrX:54840743-54840949(+)$1	1	66	106	17.6590
.(...((((((((((((((.....)))))))))))))).)	chr11:8706946-8707158(+)$1	1	114	154	26.6106
(((((((..((((((((((....)))))))))).))))))	chr4:53578757-53578961(+)$1	1	102	142	22.8680
.(((((...((((((((((....))))))))))...)).)	chrX:20154385-20154598(-)$1	1	66	106	21.9910
(((((((((((.(((((((......))))))).)))))))	chr17:7016633-7016900(-)$1	1	25	65	20.8970
.....((((((((((...((....))..))))))))))..	chr12:49048105-49048314(-)$1	1	91	131	21.2484
((..((.((((((((((((....)))))))))))).))..	chrX:118921215-118921439(-)$1	1	67	107	24.0722

#PSSM
[ : 0.22	g : 0.18	= : 0.13	d : 0.07	b : 0.05	f : 0.03	" : 0.03	& : 0.03	: : 0.03	$ : 0.03	H : 0.01	n : 0.01	a : 0.01	c : 0.01	! : 0.01	] : 0.01	% : 0.01	
g : 0.16	b : 0.16	= : 0.15	a : 0.13	c : 0.09	$ : 0.07	f : 0.03	& : 0.03	H : 0.01	i : 0.01	: : 0.01	[ : 0.01	! : 0.01	d : 0.01	# : 0.01	
g : 0.13	= : 0.13	c : 0.11	b : 0.11	" : 0.09	! : 0.07	[ : 0.07	$ : 0.07	f : 0.03	& : 0.03	# : 0.03	H : 0.01	i : 0.01	a : 0.01	d : 0.01	
g : 0.13	! : 0.13	= : 0.13	c : 0.13	" : 0.13	$ : 0.07	[ : 0.05	f : 0.03	b : 0.03	& : 0.03	# : 0.03	H : 0.01	i : 0.01	d : 0.01	
= : 0.16	b : 0.15	g : 0.13	" : 0.13	$ : 0.11	! : 0.07	c : 0.05	& : 0.03	# : 0.03	H : 0.01	f : 0.01	i : 0.01	a : 0.01	d : 0.01	
= : 0.35	g : 0.13	b : 0.11	$ : 0.07	c : 0.05	i : 0.05	" : 0.03	! : 0.03	[ : 0.03	& : 0.03	f : 0.01	e : 0.01	# : 0.01	
= : 0.47	g : 0.13	[ : 0.09	i : 0.09	$ : 0.03	e : 0.03	c : 0.03	b : 0.03	f : 0.01	! : 0.01	" : 0.01	
= : 0.60	! : 0.09	i : 0.09	$ : 0.03	e : 0.03	b : 0.03	" : 0.03	c : 0.01	[ : 0.01	g : 0.01	
= : 0.64	! : 0.09	i : 0.09	[ : 0.05	$ : 0.03	e : 0.03	" : 0.03	
= : 0.81	i : 0.11	e : 0.03	: : 0.01	" : 0.01	
= : 0.83	i : 0.15	e : 0.01	
= : 0.79	i : 0.15	# : 0.01	! : 0.01	[ : 0.01	
= : 0.77	i : 0.15	# : 0.01	[ : 0.01	! : 0.01	g : 0.01	
= : 0.79	i : 0.15	# : 0.01	e : 0.01	g : 0.01	
= : 0.75	i : 0.11	[ : 0.05	# : 0.01	e : 0.01	c : 0.01	g : 0.01	
= : 0.71	i : 0.07	c : 0.05	b : 0.03	" : 0.03	[ : 0.01	d : 0.01	e : 0.01	g : 0.01	
= : 0.67	i : 0.07	c : 0.05	b : 0.05	" : 0.03	s : 0.01	d : 0.01	e : 0.01	[ : 0.01	g : 0.01	
= : 0.64	i : 0.07	b : 0.05	c : 0.03	p : 0.03	" : 0.03	s : 0.01	o : 0.01	d : 0.01	e : 0.01	q : 0.01	g : 0.01	
= : 0.56	o : 0.13	b : 0.07	q : 0.07	i : 0.05	p : 0.03	s : 0.01	d : 0.01	g : 0.01	
m : 0.26	n : 0.18	o : 0.18	q : 0.11	= : 0.11	p : 0.03	l : 0.03	b : 0.03	s : 0.01	
m : 0.35	n : 0.18	o : 0.18	q : 0.11	= : 0.05	p : 0.03	l : 0.03	s : 0.01	
m : 0.35	n : 0.18	o : 0.18	q : 0.11	l : 0.05	p : 0.03	= : 0.03	s : 0.01	
m : 0.35	n : 0.18	o : 0.18	q : 0.11	p : 0.03	= : 0.03	l : 0.01	s : 0.01	d : 0.01	i : 0.01	
= : 0.24	n : 0.18	o : 0.16	q : 0.11	m : 0.09	l : 0.03	i : 0.03	b : 0.03	p : 0.03	s : 0.01	d : 0.01	
= : 0.52	b : 0.13	q : 0.11	i : 0.05	o : 0.05	c : 0.03	s : 0.01	d : 0.01	e : 0.01	l : 0.01	
= : 0.56	q : 0.09	b : 0.09	c : 0.05	i : 0.05	] : 0.03	s : 0.01	d : 0.01	e : 0.01	l : 0.01	g : 0.01	
= : 0.67	i : 0.11	c : 0.05	q : 0.03	2 : 0.03	b : 0.01	e : 0.01	] : 0.01	g : 0.01	
= : 0.73	i : 0.11	] : 0.03	2 : 0.03	b : 0.01	e : 0.01	c : 0.01	g : 0.01	
= : 0.81	i : 0.11	] : 0.03	e : 0.01	g : 0.01	
= : 0.83	i : 0.15	g : 0.01	
= : 0.83	i : 0.15	g : 0.01	
= : 0.83	i : 0.13	] : 0.01	g : 0.01	
= : 0.83	i : 0.11	] : 0.03	g : 0.01	
= : 0.73	i : 0.11	] : 0.09	3 : 0.03	g : 0.01	
= : 0.64	g : 0.11	i : 0.11	3 : 0.05	4 : 0.03	] : 0.01	b : 0.01	
= : 0.58	g : 0.11	] : 0.07	3 : 0.07	4 : 0.05	i : 0.05	b : 0.03	
= : 0.41	g : 0.11	4 : 0.09	b : 0.09	i : 0.05	] : 0.05	2 : 0.03	3 : 0.03	7 : 0.03	c : 0.01	e : 0.01	6 : 0.01	
= : 0.39	g : 0.13	b : 0.11	4 : 0.09	i : 0.05	2 : 0.05	c : 0.03	7 : 0.03	e : 0.01	3 : 0.01	] : 0.01	6 : 0.01	
= : 0.22	g : 0.13	] : 0.13	c : 0.11	2 : 0.09	4 : 0.07	b : 0.05	7 : 0.03	: : 0.01	E : 0.01	i : 0.01	3 : 0.01	e : 0.01	d : 0.01	6 : 0.01	
c : 0.13	2 : 0.13	g : 0.11	a : 0.11	b : 0.07	= : 0.07	] : 0.05	4 : 0.05	E : 0.03	e : 0.03	d : 0.03	7 : 0.03	i : 0.01	3 : 0.01	[ : 0.01	6 : 0.01	: : 0.01	

#score	1162.4938884813848
#seq	53
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_UTR_m3_run1.txt

#BEAR
%eeeeemmmmeeeee33	chr3:50155931-50156235(+)$1	304	228	245	7.5176
ffffffmmmmffffffe	chr2:232576509-232576723(+)$1	214	1	18	7.8133
ggggggmmmmggggggg	chr6:32948858-32949149(+)$1	291	261	278	8.9131
cc[ccclllccc]ccc]	chr16:2149765-2150019(-)$1	254	121	138	6.4637
ccddddmmmmdddd]cc	chr12:123998019-123998297(-)$1	278	235	252	7.6179
ffffffmmmmffffffc	chr12:122995555-122995835(-)$1	280	260	277	7.9419
ggggggmmmmggggggg	chr9:117046923-117047142(+)$1	219	177	194	8.9131
d!!cccmmmmccc22dd	chr7:156931546-156931873(+)$1	327	52	69	8.2895
[eeeeemmmmeeeee]a	chr2:54197760-54198041(-)$1	281	99	116	8.1099
cc!!bbmmmmbb22ccc	chr3:184039706-184039988(+)$1	282	162	179	7.2134
ee[cccmmmmccceeee	chr9:128003295-128003546(-)$1	251	170	187	8.7255
###cccmmmmcccffff	chr16:2147628-2147841(-)$1	213	122	139	8.7475
!eeeeemmmmeeeee22	chrX:107683106-107683372(+)$1	266	186	203	7.7743
[eeeeemmmmeeeee]f	chr3:184049018-184049229(+)$1	211	125	142	8.0677
iiiiiimmmmiiiiiii	chr18:13052816-13053057(+)$1	241	180	197	8.6226
!bbcccmmmmccc]bb2	chr22:19418906-19419203(-)$1	297	231	248	7.7317
cc[cccmmmmccc]ccc	chr16:2143715-2144056(-)$1	341	60	77	9.3621
ffffffmmmmffffff]	chr12:123998383-123998636(-)$1	253	203	220	7.9943
ggggggooooooggggg	chr9:79934429-79934687(+)$1	258	168	185	5.9619
ccddddmmmmdddd]cc	chr12:123997812-123998086(-)$1	274	24	41	7.6179
ff[cccmmmmccc]fff	chr22:22221688-22221981(-)$1	293	145	162	9.0426
e[ddddmmmmddddeee	chr5:74109566-74109831(-)$1	265	245	262	7.2625
c!!cccmmmmccc22cc	chr1:156351969-156352191(+)$1	222	187	204	8.8394
ffffffmmmmffffff3	chr19:1980524-1980771(+)$1	247	161	178	8.0417
cc[cccmmmmcccccc]	chr6:26123600-26123839(-)$1	239	10	27	9.2672
ggggggmmmmggggggg	chr8:124371436-124371666(-)$1	230	147	164	8.9131
$$$cccmmmmcccdddd	chr3:47098453-47098766(-)$1	313	188	205	7.8894
======oooooo=====	chr17:48797003-48797288(+)$1	285	263	280	5.9461
cc[cccmmmmccc]ccc	chr4:100871223-100871521(-)$1	298	227	244	9.3621
ggggggmmmmggggggg	chr8:124780713-124781064(+)$1	351	123	140	8.9131
d!!cccmmmmcccdddd	chr2:201677829-201678095(+)$1	266	109	126	8.4981
[eeeeemmmmeeeee22	chr1:174968973-174969339(+)$1	366	345	362	7.8062
======mmmm=======	chr6:56340880-56341168(-)$1	288	10	27	8.9038
d[ddddmmmmdddd]dd	chr2:63821519-63821775(+)$1	256	155	172	7.1598
ccccccmmmmccc]ccc	chr6:64282258-64282521(+)$1	263	192	209	9.0915
ggggggmmmmggggggg	chr10:71921533-71921789(-)$1	256	191	208	8.9131
[cccbbmmmmbb]cccb	chr20:48807460-48807731(+)$1	271	240	257	7.3590
ggggggmmmmggggggg	chr6:56330850-56331095(-)$1	245	210	227	8.9131
$$$cccmmmmcccbb]g	chr9:67785060-67785384(-)$1	324	244	261	7.8099
ccccccmmmmccc]ccc	chr17:31258243-31258526(+)$1	283	103	120	9.0915
ffffffmmmmffffffb	chr9:140610960-140611268(+)$1	308	188	205	7.6367
ff[cccammmma]ccc]	chr18:19192214-19192503(+)$1	289	52	69	7.0966
ggggggmmmmggggggg	chr19:19303600-19304011(+)$1	411	241	258	8.9131
ee[cccmmmmccceeee	chr4:100495909-100496168(+)$1	259	99	116	8.7255
c[ddddmmmmddddccc	chr1:19444227-19444488(-)$1	261	201	218	7.7466
ccc[bbmmmmbb]ccc]	chr2:28974794-28975051(+)$1	257	81	98	7.4561
ffffffmmmmffffff4	chr16:2152759-2153071(-)$1	312	167	184	7.9215
ggggggmmmmggggggg	chr18:3247720-3247980(+)$1	260	195	212	8.9131
d!!cccmmmmccc]ddd	chr12:49351013-49351329(-)$1	316	131	148	8.7002
[eeeeemmmmeeeee]b	chr2:62932898-62933159(+)$1	261	207	224	7.8780
[eeeeemmmmeeeee]d	chr17:75211194-75211453(+)$1	259	17	34	8.0374
!eeeeemmmmeeeee33	chr6:41714911-41715213(-)$1	302	250	267	8.2491

#otherMatches

#Seq PSSM
AGCGUGUUUACAUGUGU	chr3:50155931-50156235(+)$1	304	228	245	7.5176
GCCUCUGGUGGGAGGCC	chr2:232576509-232576723(+)$1	214	1	18	7.8133
UGUUUCAAAAGGAACAU	chr6:32948858-32949149(+)$1	291	261	278	8.9131
CCGUGUGGUACGGGGCU	chr16:2149765-2150019(-)$1	254	121	138	6.4637
CCAGGCUUCUGCCUCGG	chr12:123998019-123998297(-)$1	278	235	252	7.6179
cauucugacuggagugc	chr12:122995555-122995835(-)$1	280	260	277	7.9419
AGGCUGAGGUCAGCUUC	chr9:117046923-117047142(+)$1	219	177	194	8.9131
CGCGCACGUCUGCAGGG	chr7:156931546-156931873(+)$1	327	52	69	8.2895
ggggggggugUCCCUGG	chr2:54197760-54198041(-)$1	281	99	116	8.1099
GGAGGCAGCAGCAGCCA	chr3:184039706-184039988(+)$1	282	162	179	7.2134
GCUGCUGCUCAGCGCGG	chr9:128003295-128003546(-)$1	251	170	187	8.7255
CUAGAGAAACCUCGAGC	chr16:2147628-2147841(-)$1	213	122	139	8.7475
AUUGGUUAGAGCCAGCC	chrX:107683106-107683372(+)$1	266	186	203	7.7743
GCUGAACAGGUUUGGGG	chr3:184049018-184049229(+)$1	211	125	142	8.0677
UCGCCUGCUGGGGUGAG	chr18:13052816-13053057(+)$1	241	180	197	8.6226
AACCACAAUGGUGAGUG	chr22:19418906-19419203(-)$1	297	231	248	7.7317
GGAAGCGCCUGCUGCCG	chr16:2143715-2144056(-)$1	341	60	77	9.3621
CUGUGGCUGGCCACGGA	chr12:123998383-123998636(-)$1	253	203	220	7.9943
auauaugucuaugugug	chr9:79934429-79934687(+)$1	258	168	185	5.9619
CCAGGCUUCUGCCUCGG	chr12:123997812-123998086(-)$1	274	24	41	7.6179
GCACCGGCGGCGGCGCA	chr22:22221688-22221981(-)$1	293	145	162	9.0426
GUAUAUAUCAGUAUCAC	chr5:74109566-74109831(-)$1	265	245	262	7.2625
uccugguccucuaucaa	chr1:156351969-156352191(+)$1	222	187	204	8.8394
CCCAGGCCCUCCUGGGA	chr19:1980524-1980771(+)$1	247	161	178	8.0417
CUGCUUCCCGGAGAGCU	chr6:26123600-26123839(-)$1	239	10	27	9.2672
GUGGUGUUUCCAUUACU	chr8:124371436-124371666(-)$1	230	147	164	8.9131
UGUGGAAGUUUCCAGUU	chr3:47098453-47098766(-)$1	313	188	205	7.8894
GCCGCGGCGCGAUGUGG	chr17:48797003-48797288(+)$1	285	263	280	5.9461
GCGGGUUUUUGCCGGCG	chr4:100871223-100871521(-)$1	298	227	244	9.3621
CGCGGGGCCUCCCGCGU	chr8:124780713-124781064(+)$1	351	123	140	8.9131
UUAUGAAUAAUCAAAAG	chr2:201677829-201678095(+)$1	266	109	126	8.4981
GGCUUCAGAAGAGGUAA	chr1:174968973-174969339(+)$1	366	345	362	7.8062
AGAAAUUUCUGUUUCUC	chr6:56340880-56341168(-)$1	288	10	27	8.9038
ACUGCUGUACAGUAUUG	chr2:63821519-63821775(+)$1	256	155	172	7.1598
CUCACUGCAUGGUAGAG	chr6:64282258-64282521(+)$1	263	192	209	9.0915
UGAAAUACAGGUUUCAA	chr10:71921533-71921789(-)$1	256	191	208	8.9131
cggcccccgcggcgccc	chr20:48807460-48807731(+)$1	271	240	257	7.3590
CCUUGCAGGGGUAAGGA	chr6:56330850-56331095(-)$1	245	210	227	8.9131
AAGCCUUGAUAGGAGAC	chr9:67785060-67785384(-)$1	324	244	261	7.8099
CCUCAGGUCUCUGCAGG	chr17:31258243-31258526(+)$1	283	103	120	9.0915
GAGACCAAUGGGUCUUG	chr9:140610960-140611268(+)$1	308	188	205	7.6367
CGCGCGCUCUUGACGUC	chr18:19192214-19192503(+)$1	289	52	69	7.0966
ACUUGGGCCCCCAAGUU	chr19:19303600-19304011(+)$1	411	241	258	8.9131
UCCACUUCUCAGUGACU	chr4:100495909-100496168(+)$1	259	99	116	8.7255
GAGGCCAAUAGGUCCAG	chr1:19444227-19444488(-)$1	261	201	218	7.7466
CGGGGUCGAAACGCCGC	chr2:28974794-28975051(+)$1	257	81	98	7.4561
UGAGCACAACUGCUCGG	chr16:2152759-2153071(-)$1	312	167	184	7.9215
CGCUCGCGUUCGGGCGC	chr18:3247720-3247980(+)$1	260	195	212	8.9131
CAGGGCAGCAGCCGGGC	chr12:49351013-49351329(-)$1	316	131	148	8.7002
ggcggcugcugcugcgg	chr2:62932898-62933159(+)$1	261	207	224	7.8780
GUGAGUGGAAACUUAGU	chr17:75211194-75211453(+)$1	259	17	34	8.0374
AGCCCUGCAAAGGGCAA	chr6:41714911-41715213(-)$1	302	250	267	8.2491

#DB
.(((((....)))))..	chr3:50155931-50156235(+)$1	1	228	245	7.5176
((((((....))))))(	chr2:232576509-232576723(+)$1	1	1	18	7.8133
((((((....)))))))	chr6:32948858-32949149(+)$1	1	261	278	8.9131
((.(((...))).))).	chr16:2149765-2150019(-)$1	1	121	138	6.4637
((((((....)))).))	chr12:123998019-123998297(-)$1	1	235	252	7.6179
((((((....)))))))	chr12:122995555-122995835(-)$1	1	260	277	7.9419
((((((....)))))))	chr9:117046923-117047142(+)$1	1	177	194	8.9131
(..(((....)))..))	chr7:156931546-156931873(+)$1	1	52	69	8.2895
.(((((....))))).)	chr2:54197760-54198041(-)$1	1	99	116	8.1099
((..((....))..)))	chr3:184039706-184039988(+)$1	1	162	179	7.2134
((.(((....)))))))	chr9:128003295-128003546(-)$1	1	170	187	8.7255
...(((....)))))))	chr16:2147628-2147841(-)$1	1	122	139	8.7475
.(((((....)))))..	chrX:107683106-107683372(+)$1	1	186	203	7.7743
.(((((....))))).)	chr3:184049018-184049229(+)$1	1	125	142	8.0677
((((((....)))))))	chr18:13052816-13053057(+)$1	1	180	197	8.6226
.(((((....))).)).	chr22:19418906-19419203(-)$1	1	231	248	7.7317
((.(((....))).)))	chr16:2143715-2144056(-)$1	1	60	77	9.3621
((((((....)))))).	chr12:123998383-123998636(-)$1	1	203	220	7.9943
((((((......)))))	chr9:79934429-79934687(+)$1	1	168	185	5.9619
((((((....)))).))	chr12:123997812-123998086(-)$1	1	24	41	7.6179
((.(((....))).)))	chr22:22221688-22221981(-)$1	1	145	162	9.0426
(.((((....)))))))	chr5:74109566-74109831(-)$1	1	245	262	7.2625
(..(((....)))..))	chr1:156351969-156352191(+)$1	1	187	204	8.8394
((((((....)))))).	chr19:1980524-1980771(+)$1	1	161	178	8.0417
((.(((....)))))).	chr6:26123600-26123839(-)$1	1	10	27	9.2672
((((((....)))))))	chr8:124371436-124371666(-)$1	1	147	164	8.9131
...(((....)))))))	chr3:47098453-47098766(-)$1	1	188	205	7.8894
((((((......)))))	chr17:48797003-48797288(+)$1	1	263	280	5.9461
((.(((....))).)))	chr4:100871223-100871521(-)$1	1	227	244	9.3621
((((((....)))))))	chr8:124780713-124781064(+)$1	1	123	140	8.9131
(..(((....)))))))	chr2:201677829-201678095(+)$1	1	109	126	8.4981
.(((((....)))))..	chr1:174968973-174969339(+)$1	1	345	362	7.8062
((((((....)))))))	chr6:56340880-56341168(-)$1	1	10	27	8.9038
(.((((....)))).))	chr2:63821519-63821775(+)$1	1	155	172	7.1598
((((((....))).)))	chr6:64282258-64282521(+)$1	1	192	209	9.0915
((((((....)))))))	chr10:71921533-71921789(-)$1	1	191	208	8.9131
.(((((....)).))))	chr20:48807460-48807731(+)$1	1	240	257	7.3590
((((((....)))))))	chr6:56330850-56331095(-)$1	1	210	227	8.9131
...(((....))))).)	chr9:67785060-67785384(-)$1	1	244	261	7.8099
((((((....))).)))	chr17:31258243-31258526(+)$1	1	103	120	9.0915
((((((....))))))(	chr9:140610960-140611268(+)$1	1	188	205	7.6367
((.((((....).))).	chr18:19192214-19192503(+)$1	1	52	69	7.0966
((((((....)))))))	chr19:19303600-19304011(+)$1	1	241	258	8.9131
((.(((....)))))))	chr4:100495909-100496168(+)$1	1	99	116	8.7255
(.((((....)))))))	chr1:19444227-19444488(-)$1	1	201	218	7.7466
(((.((....)).))).	chr2:28974794-28975051(+)$1	1	81	98	7.4561
((((((....)))))).	chr16:2152759-2153071(-)$1	1	167	184	7.9215
((((((....)))))))	chr18:3247720-3247980(+)$1	1	195	212	8.9131
(..(((....))).)))	chr12:49351013-49351329(-)$1	1	131	148	8.7002
.(((((....))))).)	chr2:62932898-62933159(+)$1	1	207	224	7.8780
.(((((....))))).)	chr17:75211194-75211453(+)$1	1	17	34	8.0374
.(((((....)))))..	chr6:41714911-41715213(-)$1	1	250	267	8.2491

#PSSM
c : 0.23	g : 0.17	f : 0.15	[ : 0.11	d : 0.07	e : 0.05	! : 0.05	$ : 0.03	= : 0.03	% : 0.01	# : 0.01	i : 0.01	
c : 0.21	e : 0.19	g : 0.17	f : 0.15	! : 0.07	[ : 0.05	$ : 0.03	= : 0.03	# : 0.01	i : 0.01	b : 0.01	
g : 0.17	e : 0.15	[ : 0.15	f : 0.11	d : 0.09	! : 0.09	c : 0.07	$ : 0.03	= : 0.03	# : 0.01	i : 0.01	b : 0.01	
c : 0.36	g : 0.17	e : 0.15	f : 0.11	d : 0.09	= : 0.03	! : 0.01	i : 0.01	[ : 0.01	
c : 0.34	g : 0.17	e : 0.15	f : 0.11	d : 0.09	b : 0.05	= : 0.03	i : 0.01	
c : 0.34	g : 0.17	e : 0.15	f : 0.11	d : 0.09	b : 0.05	= : 0.03	i : 0.01	
m : 0.92	o : 0.03	l : 0.01	a : 0.01	
m : 0.94	o : 0.03	l : 0.01	
m : 0.94	o : 0.03	l : 0.01	
m : 0.94	o : 0.03	c : 0.01	
c : 0.32	e : 0.15	g : 0.15	f : 0.11	d : 0.09	b : 0.05	o : 0.03	i : 0.01	= : 0.01	m : 0.01	
c : 0.32	e : 0.15	g : 0.15	f : 0.11	d : 0.09	b : 0.05	o : 0.03	i : 0.01	= : 0.01	a : 0.01	
c : 0.30	g : 0.17	e : 0.15	f : 0.11	d : 0.09	] : 0.07	= : 0.03	2 : 0.01	i : 0.01	
e : 0.19	g : 0.17	f : 0.13	d : 0.13	] : 0.13	c : 0.09	2 : 0.05	= : 0.03	i : 0.01	b : 0.01	
e : 0.21	c : 0.21	g : 0.17	f : 0.15	] : 0.05	d : 0.05	2 : 0.03	b : 0.03	= : 0.03	i : 0.01	
c : 0.26	g : 0.17	f : 0.15	d : 0.09	] : 0.09	e : 0.05	3 : 0.03	2 : 0.03	= : 0.03	i : 0.01	b : 0.01	
g : 0.19	c : 0.19	d : 0.11	] : 0.09	e : 0.07	3 : 0.05	f : 0.05	2 : 0.05	b : 0.05	= : 0.03	a : 0.01	i : 0.01	4 : 0.01	

#score	423.69930353879266
#seq	52
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_CDS_m1_run2.txt

#BEAR
iiiiggggggg[ccc[ccclllccc22ccc]gggggg	chr12:58217991-58218476(-)$1	485	66	103	12.7418
c!!a[dddd[eeeeecccmmmmccc333eeeee]ddd	chr22:20073452-20073718(+)$1	266	77	114	11.8811
!ccc"""eeeee[ddddmmmmdddd]eeeee4444cc	chr7:150935307-150935575(+)$1	268	130	167	10.7475
ggg!!accc[bb!!bboooooobb]bb]ccc]a22gg	chr2:101437409-101437658(+)$1	249	159	196	12.2076
dddd[cccbbeeeeeooooooeeeee333bb]ccc]d	chr7:99690876-99691114(-)$1	238	75	112	11.8471
cdddd!!dddd!!ddddmmmmdddddddd]dddd]cc	chr12:111168338-111168635(-)$1	297	170	207	10.1581
dgggggggdddd[bbqqqqqqqqbb22dddd]ggggg	chr4:1804594-1804808(+)$1	214	79	116	10.1928
ee!!eeeeebb[cccnnnnncccbb22eeeee333ee	chr14:24901494-24901759(+)$1	265	192	229	10.8178
iiiii!!dddd!!cccooooooccc22dddd]iiiii	chr12:62996647-62996983(+)$1	336	285	322	17.2779
c!!a[dddd[eeeeecccmmmmccc333eeeee]ddd	chr22:20073340-20073652(+)$1	312	189	226	11.8811
ccc####ffffffooooooffffff22ccc22eeeee	chr19:46522367-46522729(+)$1	362	62	99	9.6811
fffff!!iiiiiiiiinnnnniiiiiiiii4444fff	chr6:91254232-91254531(-)$1	299	142	179	10.4628
e[dddd"""ccc[bbmmmmbb]ccc22dddd]eeeee	chr6:128327053-128327395(-)$1	342	242	279	10.1226
dddd[bb[ccc!!ddddmmmmdddd333ccc]bb22d	chr19:18392190-18392415(-)$1	225	150	187	11.0754
iiiiiii[ggggggglllggggggg22iiiiiiiii:	chr14:56103819-56104141(+)$1	322	70	107	9.7470
dddda[ccc####a!!bbnnnnnbb22a4444ccc]a	chr22:20074077-20074344(+)$1	267	63	100	11.4769
iiiii!!dddd!!cccooooooccc22dddd]iiiii	chr12:62996868-62997164(+)$1	296	64	101	17.2779
a[ccc[a!!ccc[cccoooooocccccc333a]ccc]	chr12:1909051-1909335(-)$1	284	173	210	15.1197
c[ccca!!eeeeecccooooooccc]eeeee22a]cc	chr7:150066650-150066963(+)$1	313	201	238	14.3402
""ffffff[ccc[cccooooooccc]ccc4444ffff	chr14:103574564-103574856(+)$1	292	174	211	13.9136
[dddd!!dddd[ddddoooooodddd]dddddddd]c	chr17:38080316-38080576(-)$1	260	72	109	13.2314
ddd[eeeee####cccooooooccc22eeeeedddd:	chr14:24901231-24901497(+)$1	266	107	144	14.3833
a[ccc!!dddd####cccmmmmccc4444dddd22cc	chr17:37899048-37899310(+)$1	262	156	193	11.8046
fffff[a"""a!!bbqqqqqqqqbb22a333a]ffff	chr16:24802021-24802339(+)$1	318	15	52	9.7936
GG:iiiiiiiii[cccooooooccc22iiiiiiiii:	chr14:21484882-21485173(-)$1	291	96	133	13.2575
dddd[cccbbeeeeeooooooeeeee333bb]ccc]d	chr7:99690914-99691163(-)$1	249	124	161	11.8471
iiiiiiiiidddd!!cccmmmmccc22dddd22iiii	chr22:20073731-20074049(+)$1	318	168	205	12.5873
ff[aeeeee[ffffffooooooffffff4444eeeee	chr3:48664362-48664659(-)$1	297	117	154	11.4543
ccc[dddd[ddddqqqqqqqqdddd22dddd333ccc	chr5:1065479-1065751(-)$1	272	25	62	9.6033
ddd!!ccc!!ccc[bboooooobbccc22ccc]dddd	chr14:24566114-24566358(+)$1	244	206	243	12.5611
ddd[eeeee####cccooooooccc22eeeeedddd:	chr14:24901297-24901621(+)$1	324	41	78	14.3833
ee!!hhhhhhhh[cccooooooccc]hhhhhhhh333	chr6:167365916-167366141(-)$1	225	105	142	12.6434
gggg"""a[iiiiiiiiillliiiiiiiiia22gggg	chr3:42661364-42661641(+)$1	277	46	83	11.3152
###ffffff[bb[cccooooooccc22bb]fffffff	chr8:25315648-25315940(-)$1	292	161	198	13.0439
dddda[ccc####a!!bbnnnnnbb22a4444ccc]a	chr22:20073982-20074277(+)$1	295	158	195	11.4769
=========[ccc[cccnnnnnccc]ccc]=======	chr22:20073863-20074182(+)$1	319	103	140	12.8294
ee!!dddddddd[cccoooooocccdddd333dddd]	chr15:34678935-34679214(-)$1	279	131	168	13.9931
]eeeeeccc[a!!ddddmmmmdddd22a]ccc:dddd	chr19:11339587-11339918(-)$1	331	248	285	10.4196
d"""dddd[bb[ddddoooooodddd]bbdddd333d	chr7:100027475-100027783(+)$1	308	3	40	12.3650
hhhhhhh[ccc[cccaooooooa]ccc]ccchhhhhh	chr1:68151570-68151884(+)$1	314	115	152	11.7702
f!!bb[ddddeeeeeooooooeeeee]dddd]bb22f	chr12:125270543-125270859(-)$1	316	82	119	11.1151
!dddddddd####ddddllldddd333dddd22dddd	chr6:170123859-170124127(-)$1	268	207	244	11.5148
eeegggggggcccrrrrrrrrrccc]ggggggg4444	chr1:988673-988949(+)$1	276	64	101	10.6262
iiiiiiiii[ffffffooooooffffff22iiiiiii	chr13:113863706-113864078(+)$1	372	12	49	12.2576

#otherMatches

#Seq PSSM
CUUGUUUCUGGAGGCAGCUGAUGGUCCGCCGCCGGAA	chr12:58217991-58218476(-)$1	485	66	103	12.7418
CAGGAGAAGCGGUGAUGGAGAGCCGAGCUCGCCCCUU	chr22:20073452-20073718(+)$1	266	77	114	11.8811
UUUGACCGGCAGGCUUCUGCGGAGGGCUGCUUCUACA	chr7:150935307-150935575(+)$1	268	130	167	10.7475
GGGCAGGUCGGUAACCAGGGAAGGGACAGGCACCACC	chr2:101437409-101437658(+)$1	249	159	196	12.2076
CUACCUUCCCCUUAGGCACGUCUGAGAAUGGUGGAUG	chr7:99690876-99691114(-)$1	238	75	112	11.8471
GGGGAAAGCAGUCAUUGGAGACGAUCUGCCUCUUACU	chr12:111168338-111168635(-)$1	297	170	207	10.1581
CGCCUCCGCCUGGCCAAUGUGUCGGAGCGGGACGGGG	chr4:1804594-1804808(+)$1	214	79	116	10.1928
GCAACUUGGUGACUGGCACACAGCGUUUCAAGGAGGC	chr14:24901494-24901759(+)$1	265	192	229	10.8178
GGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCCCC	chr12:62996647-62996983(+)$1	336	285	322	17.2779
CAGGAGAAGCGGUGAUGGAGAGCCGAGCUCGCCCCUU	chr22:20073340-20073652(+)$1	312	189	226	11.8811
UGGAGAAGGAGACAGUGGGGUUUUUGGCCAUGGGAGG	chr19:46522367-46522729(+)$1	362	62	99	9.6811
GUUGUUUGCAUGUAUACUGUAUAUAUGUGUUUUUGCA	chr6:91254232-91254531(-)$1	299	142	179	10.4628
GAUGUACAACUUUACGUGUGUUAAGGAUGCAGUAUCC	chr6:128327053-128327395(-)$1	342	242	279	10.1226
GCUGAGCGGCCUGGGCGGCGGCGCCAGUGGCAGCGGC	chr19:18392190-18392415(-)$1	225	150	187	11.0754
CUGUAAAAUGUAAUGUUUUAUUACAGAUUUACAGAGU	chr14:56103819-56104141(+)$1	322	70	107	9.7470
UUCACGGCUAAAGCAAUCGUUCAGAGAGACAGAGUGG	chr22:20074077-20074344(+)$1	267	63	100	11.4769
GGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCCCC	chr12:62996868-62997164(+)$1	296	64	101	17.2779
AGUGCACGGAGCUGCAGGGCCAUGUGCUGAAGAGCAG	chr12:1909051-1909335(-)$1	284	173	210	15.1197
UACCGGAGUGUGGGCCGAAGCAGGCGCUGCAGCCGCG	chr7:150066650-150066963(+)$1	313	201	238	14.3402
GAGGCCACAUGGUUGGACCAAGCCAUCCAGUGCGUGG	chr14:103574564-103574856(+)$1	292	174	211	13.9136
GUCUGACCUGUGCUGCUUGUUUGCAGAACAGCAGAGA	chr17:38080316-38080576(-)$1	260	72	109	13.2314
CAGUGGGUGGAGGGGCAAGGGAGUCAGCACCCCUGAA	chr14:24901231-24901497(+)$1	266	107	144	14.3833
GGUGCCACAGCUCGCCACGUGUGUGAAAUGCUGGUGC	chr17:37899048-37899310(+)$1	262	156	193	11.8046
AGUAGAGACAGAAGAAAAAUUGAUCAGCACACAUUAC	chr16:24802021-24802339(+)$1	318	15	52	9.7936
GGAGCUAAGCUUGGGCUGGGCUGCUUGGGGCUUGGCA	chr14:21484882-21485173(-)$1	291	96	133	13.2575
CUACCUUCCCCUUAGGCACGUCUGAGAAUGGUGGAUG	chr7:99690914-99691163(-)$1	249	124	161	11.8471
AGGAGCAGAGCGCGACGUGCGGGCGGAGUGCGGUCUG	chr22:20073731-20074049(+)$1	318	168	205	12.5873
AGUCCUGCCUUCACUCUCUCAUGGGUGGCCCUGGCAG	chr3:48664362-48664659(-)$1	297	117	154	11.4543
UUGAGCCUUCGGGCCUUCCCUCCUGCUGGGUCCACAG	chr5:1065479-1065751(-)$1	272	25	62	9.6033
CGAAAGCUCCCCAAGUACAAUAACUGGUAAGCCUUGG	chr14:24566114-24566358(+)$1	244	206	243	12.5611
CAGUGGGUGGAGGGGCAAGGGAGUCAGCACCCCUGAA	chr14:24901297-24901621(+)$1	324	41	78	14.3833
UGACAACCAUGAGUGGAAAAAACUAAUUAUGGUUCAG	chr6:167365916-167366141(-)$1	225	105	142	12.6434
GGUUAAACAUGACUUUCAGCAUGGAGGUUAGGCAACU	chr3:42661364-42661641(+)$1	277	46	83	11.3152
CCAGCGGGGGCAGCGCGAUGAGGCGGGUGACCCUGUU	chr8:25315648-25315940(-)$1	292	161	198	13.0439
UUCACGGCUAAAGCAAUCGUUCAGAGAGACAGAGUGG	chr22:20073982-20074277(+)$1	295	158	195	11.4769
GCUUGUCCCUUUGGCGGGAGUGUUGGUGACGGGGUAG	chr22:20073863-20074182(+)$1	319	103	140	12.8294
GGCUCUGGGCGGAGGUGCAGUGACCCCGCAGGCCAGC	chr15:34678935-34679214(-)$1	279	131	168	13.9931
CAGUGCCGUACGCGAGGCCAUCCUCCAGCACGCCUGG	chr19:11339587-11339918(-)$1	331	248	285	10.4196
UAGGGCGCACUUGGCGGGGAGGCGCUUGGGCGCGAGA	chr7:100027475-100027783(+)$1	308	3	40	12.3650
CCUCGCCCUUGCCCGCGUGUAGGAUGGAUAAGGUGGG	chr1:68151570-68151884(+)$1	314	115	152	11.7702
UCUCUGCCGGAGUGGGAGCGGUCACUGCUGGGGGCUG	chr12:125270543-125270859(-)$1	316	82	119	11.1151
ACCCGACCCUGACCCCGUCCCGGGCCUGGGUGCCGGG	chr6:170123859-170124127(-)$1	268	207	244	11.5148
CUUCUGUGGGUGCCUGCUCCUUGCACCCCACAGUGUU	chr1:988673-988949(+)$1	276	64	101	10.6262
GAAUCUCUUAGGGGGAGUCCGAUCCCUCAGGAGGGAU	chr13:113863706-113864078(+)$1	372	12	49	12.2576

#DB
))))(((((((.(((.(((...)))..))).))))))	chr12:58217991-58218476(-)$1	1	66	103	12.7418
(..(.((((.((((((((....)))...))))).)))	chr22:20073452-20073718(+)$1	1	77	114	11.8811
.(((...(((((.((((....)))).)))))....))	chr7:150935307-150935575(+)$1	1	130	167	10.7475
(((..((((.((..((......)).)).))).)..))	chr2:101437409-101437658(+)$1	1	159	196	12.2076
((((.((((((((((......)))))...)).))).)	chr7:99690876-99691114(-)$1	1	75	112	11.8471
(((((..((((..((((....)))))))).)))).))	chr12:111168338-111168635(-)$1	1	170	207	10.1581
((((((((((((.((........))..)))).)))))	chr4:1804594-1804808(+)$1	1	79	116	10.1928
((..(((((((.(((.....)))))..)))))...))	chr14:24901494-24901759(+)$1	1	192	229	10.8178
(((((..((((..(((......)))..)))).)))))	chr12:62996647-62996983(+)$1	1	285	322	17.2779
(..(.((((.((((((((....)))...))))).)))	chr22:20073340-20073652(+)$1	1	189	226	11.8811
(((....((((((......))))))..)))..)))))	chr19:46522367-46522729(+)$1	1	62	99	9.6811
(((((..(((((((((.....)))))))))....)))	chr6:91254232-91254531(-)$1	1	142	179	10.4628
(.((((...(((.((....)).)))..)))).)))))	chr6:128327053-128327395(-)$1	1	242	279	10.1226
((((.((.(((..((((....))))...))).))..)	chr19:18392190-18392415(-)$1	1	150	187	11.0754
(((((((.(((((((...)))))))..))))))))).	chr14:56103819-56104141(+)$1	1	70	107	9.7470
(((((.(((....(..((.....))..)....))).)	chr22:20074077-20074344(+)$1	1	63	100	11.4769
(((((..((((..(((......)))..)))).)))))	chr12:62996868-62997164(+)$1	1	64	101	17.2779
(.(((.(..(((.(((......))))))...).))).	chr12:1909051-1909335(-)$1	1	173	210	15.1197
(.((((..((((((((......))).)))))..).))	chr7:150066650-150066963(+)$1	1	201	238	14.3402
..((((((.(((.(((......))).)))....))))	chr14:103574564-103574856(+)$1	1	174	211	13.9136
.((((..((((.((((......)))).)))))))).)	chr17:38080316-38080576(-)$1	1	72	109	13.2314
(((.(((((....(((......)))..))))))))).	chr14:24901231-24901497(+)$1	1	107	144	14.3833
(.(((..((((....(((....)))....))))..))	chr17:37899048-37899310(+)$1	1	156	193	11.8046
(((((.(...(..((........))..)...).))))	chr16:24802021-24802339(+)$1	1	15	52	9.7936
((.(((((((((.(((......)))..))))))))).	chr14:21484882-21485173(-)$1	1	96	133	13.2575
((((.((((((((((......)))))...)).))).)	chr7:99690914-99691163(-)$1	1	124	161	11.8471
(((((((((((((..(((....)))..))))..))))	chr22:20073731-20074049(+)$1	1	168	205	12.5873
((.((((((.((((((......))))))....)))))	chr3:48664362-48664659(-)$1	1	117	154	11.4543
(((.((((.((((........))))..))))...)))	chr5:1065479-1065751(-)$1	1	25	62	9.6033
(((..(((..(((.((......)))))..))).))))	chr14:24566114-24566358(+)$1	1	206	243	12.5611
(((.(((((....(((......)))..))))))))).	chr14:24901297-24901621(+)$1	1	41	78	14.3833
((..((((((((.(((......))).))))))))...	chr6:167365916-167366141(-)$1	1	105	142	12.6434
((((...(.(((((((((...))))))))))..))))	chr3:42661364-42661641(+)$1	1	46	83	11.3152
...((((((.((.(((......)))..)).)))))))	chr8:25315648-25315940(-)$1	1	161	198	13.0439
(((((.(((....(..((.....))..)....))).)	chr22:20073982-20074277(+)$1	1	158	195	11.4769
(((((((((.(((.(((.....))).))).)))))))	chr22:20073863-20074182(+)$1	1	103	140	12.8294
((..((((((((.(((......)))))))...)))).	chr15:34678935-34679214(-)$1	1	131	168	13.9931
.)))))(((.(..((((....))))..).))).((((	chr19:11339587-11339918(-)$1	1	248	285	10.4196
(...((((.((.((((......)))).))))))...)	chr7:100027475-100027783(+)$1	1	3	40	12.3650
(((((((.(((.((((......).))).)))))))))	chr1:68151570-68151884(+)$1	1	115	152	11.7702
(..((.(((((((((......))))).)))).))..)	chr12:125270543-125270859(-)$1	1	82	119	11.1151
.((((((((....((((...))))...))))..))))	chr6:170123859-170124127(-)$1	1	207	244	11.5148
(((((((((((((.........))).)))))))....	chr1:988673-988949(+)$1	1	64	101	10.6262
(((((((((.((((((......))))))..)))))))	chr13:113863706-113864078(+)$1	1	12	49	12.2576

#PSSM
d : 0.22	i : 0.13	c : 0.13	e : 0.11	f : 0.09	! : 0.04	g : 0.04	a : 0.04	" : 0.02	[ : 0.02	G : 0.02	# : 0.02	= : 0.02	] : 0.02	h : 0.02	
d : 0.25	i : 0.13	e : 0.11	[ : 0.09	! : 0.06	c : 0.06	g : 0.06	f : 0.06	" : 0.04	G : 0.02	# : 0.02	= : 0.02	h : 0.02	
d : 0.27	i : 0.13	! : 0.13	c : 0.13	g : 0.06	f : 0.06	e : 0.04	: : 0.02	[ : 0.02	# : 0.02	= : 0.02	" : 0.02	h : 0.02	
d : 0.20	i : 0.15	! : 0.11	c : 0.09	f : 0.09	a : 0.06	g : 0.06	[ : 0.06	# : 0.02	= : 0.02	e : 0.02	" : 0.02	h : 0.02	b : 0.02	
d : 0.15	i : 0.13	[ : 0.11	e : 0.11	f : 0.09	g : 0.06	c : 0.06	" : 0.04	! : 0.04	a : 0.04	h : 0.04	# : 0.02	= : 0.02	b : 0.02	
d : 0.15	! : 0.13	e : 0.11	[ : 0.11	i : 0.09	g : 0.06	c : 0.06	" : 0.04	a : 0.04	f : 0.04	h : 0.04	# : 0.02	b : 0.02	= : 0.02	
d : 0.15	c : 0.15	! : 0.15	e : 0.09	i : 0.09	g : 0.06	" : 0.06	a : 0.04	f : 0.04	h : 0.04	# : 0.02	b : 0.02	= : 0.02	
d : 0.27	c : 0.15	e : 0.11	i : 0.09	g : 0.06	f : 0.06	[ : 0.06	" : 0.04	! : 0.04	h : 0.02	a : 0.02	= : 0.02	
d : 0.25	e : 0.13	c : 0.13	i : 0.09	[ : 0.09	g : 0.06	b : 0.04	f : 0.04	" : 0.04	! : 0.04	h : 0.02	= : 0.02	
d : 0.22	[ : 0.18	c : 0.11	# : 0.11	b : 0.09	g : 0.06	i : 0.06	e : 0.04	f : 0.02	" : 0.02	! : 0.02	h : 0.02	
d : 0.20	c : 0.18	e : 0.15	# : 0.11	b : 0.09	f : 0.06	i : 0.06	g : 0.04	a : 0.04	h : 0.02	
e : 0.15	! : 0.13	c : 0.13	# : 0.13	[ : 0.11	d : 0.09	f : 0.06	i : 0.06	b : 0.04	g : 0.02	h : 0.02	
[ : 0.20	! : 0.15	c : 0.13	e : 0.13	# : 0.13	d : 0.09	f : 0.06	i : 0.04	g : 0.02	
c : 0.31	d : 0.15	e : 0.11	b : 0.06	! : 0.04	i : 0.04	a : 0.04	f : 0.04	[ : 0.04	o : 0.02	g : 0.02	# : 0.02	q : 0.02	r : 0.02	
c : 0.34	d : 0.15	e : 0.11	b : 0.11	! : 0.06	i : 0.04	f : 0.04	o : 0.02	g : 0.02	# : 0.02	q : 0.02	r : 0.02	
c : 0.36	d : 0.15	o : 0.09	q : 0.06	b : 0.04	i : 0.04	! : 0.04	f : 0.04	[ : 0.02	n : 0.02	m : 0.02	l : 0.02	a : 0.02	r : 0.02	
o : 0.49	c : 0.13	d : 0.11	q : 0.06	n : 0.04	b : 0.04	m : 0.02	l : 0.02	i : 0.02	r : 0.02	
o : 0.49	c : 0.11	m : 0.11	q : 0.06	n : 0.06	l : 0.04	b : 0.04	i : 0.02	r : 0.02	
o : 0.49	m : 0.20	n : 0.11	q : 0.06	l : 0.04	c : 0.02	g : 0.02	r : 0.02	
o : 0.47	m : 0.18	n : 0.11	l : 0.06	q : 0.06	f : 0.02	b : 0.02	g : 0.02	r : 0.02	
o : 0.47	m : 0.18	n : 0.09	q : 0.06	l : 0.04	c : 0.02	f : 0.02	b : 0.02	g : 0.02	d : 0.02	r : 0.02	
o : 0.40	d : 0.13	m : 0.09	e : 0.06	n : 0.06	q : 0.04	i : 0.04	l : 0.02	c : 0.02	f : 0.02	] : 0.02	g : 0.02	r : 0.02	
c : 0.45	d : 0.18	e : 0.06	f : 0.06	b : 0.04	q : 0.04	i : 0.04	n : 0.04	g : 0.02	a : 0.02	
c : 0.43	d : 0.18	b : 0.15	e : 0.06	f : 0.06	i : 0.04	g : 0.02	] : 0.02	
c : 0.47	d : 0.15	b : 0.11	e : 0.06	f : 0.06	i : 0.04	] : 0.02	g : 0.02	3 : 0.02	
2 : 0.40	] : 0.13	3 : 0.09	d : 0.09	e : 0.06	c : 0.06	i : 0.04	f : 0.04	b : 0.02	4 : 0.02	
2 : 0.40	3 : 0.13	c : 0.11	] : 0.06	e : 0.04	d : 0.04	i : 0.04	f : 0.04	b : 0.02	4 : 0.02	h : 0.02	g : 0.02	
d : 0.25	c : 0.11	3 : 0.11	e : 0.11	i : 0.09	a : 0.09	] : 0.04	f : 0.04	b : 0.04	4 : 0.02	2 : 0.02	h : 0.02	g : 0.02	
d : 0.25	c : 0.15	e : 0.15	3 : 0.09	i : 0.09	4 : 0.09	2 : 0.04	b : 0.04	h : 0.02	] : 0.02	g : 0.02	
d : 0.25	c : 0.15	e : 0.15	i : 0.09	4 : 0.09	] : 0.06	3 : 0.06	b : 0.04	h : 0.02	g : 0.02	2 : 0.02	
d : 0.27	e : 0.15	c : 0.11	4 : 0.11	i : 0.06	3 : 0.06	b : 0.04	] : 0.02	2 : 0.02	h : 0.02	a : 0.02	f : 0.02	= : 0.02	g : 0.02	
] : 0.20	4 : 0.13	e : 0.11	2 : 0.11	d : 0.09	i : 0.06	g : 0.04	a : 0.04	3 : 0.04	c : 0.04	h : 0.04	f : 0.02	= : 0.02	
d : 0.15	e : 0.11	i : 0.11	c : 0.09	2 : 0.09	g : 0.06	4 : 0.06	] : 0.06	3 : 0.04	b : 0.04	h : 0.04	a : 0.02	f : 0.02	= : 0.02	: : 0.02	
d : 0.18	i : 0.13	c : 0.11	g : 0.06	4 : 0.06	3 : 0.06	e : 0.06	f : 0.06	] : 0.04	2 : 0.04	b : 0.04	h : 0.04	a : 0.02	= : 0.02	
d : 0.20	c : 0.13	i : 0.13	2 : 0.09	f : 0.09	g : 0.06	3 : 0.06	e : 0.06	4 : 0.04	] : 0.04	= : 0.02	h : 0.02	
d : 0.18	c : 0.13	i : 0.13	] : 0.11	g : 0.09	e : 0.09	f : 0.09	2 : 0.04	3 : 0.04	= : 0.02	h : 0.02	4 : 0.02	
d : 0.20	c : 0.13	f : 0.11	g : 0.09	e : 0.09	i : 0.09	: : 0.09	a : 0.04	] : 0.04	3 : 0.02	= : 0.02	h : 0.02	4 : 0.02	

#score	533.2494442741068
#seq	44
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_CDS_m2_run1.txt

#BEAR
gggggggqqqqqqqqggggggg	chr19:10941587-10941858(+)$1	271	62	84	15.3531
ddeeeeeqqqqqqqqeeeee]d	chr19:1271452-1271715(+)$1	263	131	153	14.4523
hhh[cccqqqqqqqqccc22hh	chr6:31604781-31605010(+)$1	229	97	119	15.7418
!bb[cccqqqqqqqqccc]bb2	chr12:56511165-56511374(+)$1	209	128	150	15.2253
gggggggqqqqqqqqggggggg	chr19:51228419-51228688(+)$1	269	247	269	15.3531
c!!ddddqqqqqqqqdddd22c	chr1:10689815-10690117(+)$1	302	16	38	14.7657
ccc[cccqqqqqqqqccc333c	chr16:418227-418440(-)$1	213	21	43	16.5566
ddddcccqqqqqqqqccc22dd	chr14:23389958-23390265(-)$1	307	260	282	15.2980
d"""cccqqqqqqqqccc333d	chr1:50941031-50941294(-)$1	263	155	177	16.4535
dd!!cccqqqqqqqqccc]ddd	chr19:18699523-18699810(+)$1	287	199	221	15.7820
gggggggqqqqqqqqggggggg	chr19:38741820-38742048(-)$1	228	126	148	15.3531
&dddd[aqqqqqqqqa]dddd7	chr11:64789185-64789462(+)$1	277	116	138	12.6065
===!!bbqqqqqqqqbb22===	chr11:67379742-67380028(+)$1	286	151	173	15.0689
eee[cccqqqqqqqqccc22ee	chr3:48481604-48481822(+)$1	218	107	129	15.7496
dd!!cccqqqqqqqqccc22dd	chr11:62601262-62601515(-)$1	253	19	41	15.9393
b"""cccqqqqqqqqccc4444	chr1:29475329-29475569(-)$1	240	106	128	15.9525
f[eeeeeqqqqqqqqeeeee22	chr19:1106492-1106738(+)$1	246	12	34	14.6245
!ccccccqqqqqqqqccc]ccc	chr6:33258019-33258305(+)$1	286	232	254	15.9183
c"""cccqqqqqqqqccc5555	chr19:50059473-50059729(-)$1	256	156	178	13.0803
c[eeeeeqqqqqqqqeeeeecc	chr11:64533291-64533537(-)$1	246	26	48	14.8160
e[eeeeeqqqqqqqqeeeee]e	chr19:55998126-55998412(+)$1	286	40	62	14.7465
####cccqqqqqqqqcccgggg	chr19:10940863-10941116(+)$1	253	47	69	16.0261
hhhh[bbqqqqqqqqbbhhhhh	chr7:99751453-99751726(+)$1	273	210	232	13.6697
gggg[bbqqqqqqqqbbggggg	chr19:45412375-45412681(+)$1	306	94	116	14.9620
b"""cccqqqqqqqqccc]bb]	chr16:88876730-88876962(-)$1	232	156	178	15.5982
gg!!cccqqqqqqqqcccgggg	chr20:2641077-2641312(-)$1	235	91	113	16.3815
""bb[bbqqqqqqqqbb]bb]d	chr11:67379490-67379746(+)$1	256	26	48	13.5333
dd!!cccqqqqqqqqccc]ddd	chr19:18699707-18699997(+)$1	290	15	37	15.7820
b[eeeeeqqqqqqqqeeeee]b	chr1:110950104-110950404(-)$1	300	16	38	14.5627
bb!!cccqqqqqqqqccc22bb	chrX:153195462-153195783(-)$1	321	37	59	15.4576
eea[cccqqqqqqqqccc]a>>	chr12:53689529-53689744(+)$1	215	19	41	15.7039
b!!ddddqqqqqqqqdddd22b	chr11:65421934-65422253(-)$1	319	194	216	14.3460
!ffffffqqqqqqqqffffffe	chr14:21484915-21485227(-)$1	312	217	239	13.6412
$ffffffqqqqqqqqffffff5	chr7:99057627-99057900(-)$1	273	51	73	12.7185
==eeeeeqqqqqqqqeeeee::	chr21:40551749-40552011(-)$1	262	215	237	13.0268
iiiiiiiqqqqqqqqiiiiiii	chr7:99690814-99691072(-)$1	258	176	198	15.3148
b[eeeeeqqqqqqqqeeeee]b	chr1:155290199-155290477(+)$1	278	76	98	14.5627
hhh[cccqqqqqqqqccc]hhh	chr9:140002739-140002994(+)$1	255	162	184	15.6111
hhh[cccqqqqqqqqccc22hh	chr6:31604756-31604981(+)$1	225	122	144	15.7418
ffffcccqqqqqqqqccc]fff	chr7:150840351-150840627(+)$1	276	177	199	15.0035
a[bb[bbqqqqqqqqbb]bb]a	chr9:130931228-130931475(-)$1	247	50	72	13.6690
""eeeeeqqqqqqqqeeeee22	chr9:131396485-131396760(-)$1	275	122	144	14.7081
hhhhhhhqqqqqqqqhhhhhhh	chr19:19626934-19627199(+)$1	265	75	97	13.5750
dddd[bbqqqqqqqqbb]dddd	chr11:63990837-63991122(+)$1	285	230	252	13.6056
ddd[cccqqqqqqqqccc22dd	chr19:50354436-50354729(+)$1	293	94	116	15.6591
eeeecccqqqqqqqqccc22ee	chr20:32868664-32868990(-)$1	326	114	136	15.4862
!!eeeeeqqqqqqqqeeeee33	chr16:31539720-31539976(+)$1	256	163	185	15.1916
ccc[cccqqqqqqqqccc]ccc	chr1:228680736-228681023(+)$1	287	189	211	16.1295
gggggggqqqqqqqqggggggg	chr14:23033884-23034137(-)$1	253	193	215	15.3531
gggg[bbqqqqqqqqbb22ggg	chr6:31526032-31526341(+)$1	309	69	91	14.8316
gggggggqqqqqqqqggggggg	chr20:2816602-2816918(-)$1	316	30	52	15.3531
g[eeeeeqqqqqqqqeeeeegg	chr8:145133559-145133826(+)$1	267	6	28	14.9392
hbb[cccqqqqqqqqcccbb::	chr1:12034747-12034989(+)$1	242	62	84	13.0317
dddddddqqqqqqqqddddbb[	chr5:1814464-1814676(+)$1	212	91	113	13.2252
cc[ddddqqqqqqqqddddccc	chr22:41347279-41347577(+)$1	298	182	204	14.3507
gggggggqqqqqqqqggggggg	chr19:39405991-39406249(-)$1	258	129	151	15.3531
f[eeeeeqqqqqqqqeeeee22	chr19:1106461-1106692(+)$1	231	43	65	14.6245
!ccc[bbqqqqqqqqbbccc22	chr18:12720529-12720778(+)$1	249	136	158	14.5525
"a[ddddqqqqqqqqdddd]a4	chrX:153678532-153678768(+)$1	236	153	175	14.4489
ggg!!bbqqqqqqqqbb22ggg	chr1:113246312-113246529(-)$1	217	45	67	15.0127

#otherMatches

#Seq PSSM
GCAGCAGAAGACCCCCUGCUGC	chr19:10941587-10941858(+)$1	271	62	84	15.3531
CGAGUCCAGGAGUGGGGGCUAC	chr19:1271452-1271715(+)$1	263	131	153	14.4523
GGACCUGGAUCAUCACGGACUC	chr6:31604781-31605010(+)$1	229	97	119	15.7418
CAGAGGUCCAAGUAAACCGCUA	chr12:56511165-56511374(+)$1	209	128	150	15.2253
CUGGUGGGACCACGACUGCCAG	chr19:51228419-51228688(+)$1	269	247	269	15.3531
CAGGUGCGGAUGGAGGUGCAAG	chr1:10689815-10690117(+)$1	302	16	38	14.7657
CCUAGGAAUUUGCCAUCCCAGA	chr16:418227-418440(-)$1	213	21	43	16.5566
AGGAGCAUUUCAAUCUGCUUUC	chr14:23389958-23390265(-)$1	307	260	282	15.2980
AGACGUAAGUUCCCAUACCUAU	chr1:50941031-50941294(-)$1	263	155	177	16.4535
CCAAGCGGGAAcgggcgcgggg	chr19:18699523-18699810(+)$1	287	199	221	15.7820
CAGCUUGCUUGUGUAUAAGUUG	chr19:38741820-38742048(-)$1	228	126	148	15.3531
CCAGCCGCAUUUUCACAGCUGA	chr11:64789185-64789462(+)$1	277	116	138	12.6065
GCCCAGCAGCAUCAGGCCCGGC	chr11:67379742-67380028(+)$1	286	151	173	15.0689
CGGCCGCGAAGGUAAGUGUUCC	chr3:48481604-48481822(+)$1	218	107	129	15.7496
uugaaauggaaagugauuggaa	chr11:62601262-62601515(-)$1	253	19	41	15.9393
ggagugugagcaggggcaggag	chr1:29475329-29475569(-)$1	240	106	128	15.9525
GUAGCUGCCCUAACCCAGCUUU	chr19:1106492-1106738(+)$1	246	12	34	14.6245
UGCUGCACCCUGUGAUGCAAGU	chr6:33258019-33258305(+)$1	286	232	254	15.9183
GUAAGAGUcccaccccuccccu	chr19:50059473-50059729(-)$1	256	156	178	13.0803
GUGCCCCUGCCCCCCGGGGUCC	chr11:64533291-64533537(-)$1	246	26	48	14.8160
UGGGGGCAUGGGGGAGCCCCGG	chr19:55998126-55998412(+)$1	286	40	62	14.7465
AGCAGCCUCCUUCUCGGCGCCC	chr19:10940863-10941116(+)$1	253	47	69	16.0261
UUGGCUUGCUGCUAGAACUAGG	chr7:99751453-99751726(+)$1	273	210	232	13.6697
GCACCAGCGCCGCCCCUGUGCC	chr19:45412375-45412681(+)$1	306	94	116	14.9620
GAAGGGCAGGGCCAGGCCACCG	chr16:88876730-88876962(-)$1	232	156	178	15.5982
AUUGAGUGUUUGAAGAUUGUCA	chr20:2641077-2641312(-)$1	235	91	113	16.3815
CUGCAGCCCUCAAGCGCCGCCC	chr11:67379490-67379746(+)$1	256	26	48	13.5333
CCAAGCGGGAAcgggcgcgggg	chr19:18699707-18699997(+)$1	290	15	37	15.7820
AACGCGGACGUUGCACCGUGAU	chr1:110950104-110950404(-)$1	300	16	38	14.5627
AGGCUCCCUUUGUCUGGAAACU	chrX:153195462-153195783(-)$1	321	37	59	15.4576
ACCUGCCCCCUCCCCGGCCGCG	chr12:53689529-53689744(+)$1	215	19	41	15.7039
ACCUGUGGCCCCCCACACAACU	chr11:65421934-65422253(-)$1	319	194	216	14.3460
ACCACACUGUAGUAUGUGUGGA	chr14:21484915-21485227(-)$1	312	217	239	13.6412
CAGUGGGUAUUUUUUCUCACUC	chr7:99057627-99057900(-)$1	273	51	73	12.7185
UUAAGGGUUCGAUGUCUUUUAA	chr21:40551749-40552011(-)$1	262	215	237	13.0268
GACAAAGCUGUGUCACUUUGUC	chr7:99690814-99691072(-)$1	258	176	198	15.3148
UGUUCUUGCAAUAUGAGGAAGA	chr1:155290199-155290477(+)$1	278	76	98	14.5627
GGACAAGAUGGAGAGCUUCUUC	chr9:140002739-140002994(+)$1	255	162	184	15.6111
GGACCUGGAUCAUCACGGACUC	chr6:31604756-31604981(+)$1	225	122	144	15.7418
CCGUGGUGGAAGAUGACCUGCG	chr7:150840351-150840627(+)$1	276	177	199	15.0035
UGGACGCUGUGGGUUGCUUCga	chr9:130931228-130931475(-)$1	247	50	72	13.6690
UGACGGGCAUGUCCACCUGUAC	chr9:131396485-131396760(-)$1	275	122	144	14.7081
ACUUCCGCCCGGGACCGGAAGU	chr19:19626934-19627199(+)$1	265	75	97	13.5750
CAGCUGGGCAUUUCACCUGCUG	chr11:63990837-63991122(+)$1	285	230	252	13.6056
CGCAGCCCCCCUUGUGGCCCGC	chr19:50354436-50354729(+)$1	293	94	116	15.6591
UGAUGGCCCCUUCAAGCCGGAU	chr20:32868664-32868990(-)$1	326	114	136	15.4862
CAAGAGCGAGACAAGGCUCUGC	chr16:31539720-31539976(+)$1	256	163	185	15.1916
CGGAGCUGGAGAAGAAGCAUCG	chr1:228680736-228681023(+)$1	287	189	211	16.1295
GCUUUUUAUGCAGGAGAAAAGC	chr14:23033884-23034137(-)$1	253	193	215	15.3531
GAGGAGCGGGGAGGGGCAGCCU	chr6:31526032-31526341(+)$1	309	69	91	14.8316
GGGAGCACCUGGccuugcuccc	chr20:2816602-2816918(-)$1	316	30	52	15.3531
CCGGGAGCUGUAGUUCUCCCGC	chr8:145133559-145133826(+)$1	267	6	28	14.9392
GGCUCCCCACCACCAGGGGCAC	chr1:12034747-12034989(+)$1	242	62	84	13.0317
CAAAAGUGUAUAUAAACUUGGU	chr5:1814464-1814676(+)$1	212	91	113	13.2252
GCGCUUUGAAGUGAAAAAGGUU	chr22:41347279-41347577(+)$1	298	182	204	14.3507
GGGCCCCUGGACCACGGGGUCC	chr19:39405991-39406249(-)$1	258	129	151	15.3531
GUAGCUGCCCUAACCCAGCUUU	chr19:1106461-1106692(+)$1	231	43	65	14.6245
ACACUCUAUGAUGAAAGGUGAG	chr18:12720529-12720778(+)$1	249	136	158	14.5525
GGACCCCUCCAAGUUGGGGACG	chrX:153678532-153678768(+)$1	236	153	175	14.4489
AGUGUUUUUGGACUUAAUGGCU	chr1:113246312-113246529(-)$1	217	45	67	15.0127

#DB
(((((((........)))))))	chr19:10941587-10941858(+)$1	1	62	84	15.3531
(((((((........))))).)	chr19:1271452-1271715(+)$1	1	131	153	14.4523
(((.(((........)))..))	chr6:31604781-31605010(+)$1	1	97	119	15.7418
.((.(((........))).)).	chr12:56511165-56511374(+)$1	1	128	150	15.2253
(((((((........)))))))	chr19:51228419-51228688(+)$1	1	247	269	15.3531
(..((((........))))..)	chr1:10689815-10690117(+)$1	1	16	38	14.7657
(((.(((........)))...)	chr16:418227-418440(-)$1	1	21	43	16.5566
(((((((........)))..))	chr14:23389958-23390265(-)$1	1	260	282	15.2980
(...(((........)))...)	chr1:50941031-50941294(-)$1	1	155	177	16.4535
((..(((........))).)))	chr19:18699523-18699810(+)$1	1	199	221	15.7820
(((((((........)))))))	chr19:38741820-38742048(-)$1	1	126	148	15.3531
.((((.(........).)))).	chr11:64789185-64789462(+)$1	1	116	138	12.6065
(((..((........))..)))	chr11:67379742-67380028(+)$1	1	151	173	15.0689
(((.(((........)))..))	chr3:48481604-48481822(+)$1	1	107	129	15.7496
((..(((........)))..))	chr11:62601262-62601515(-)$1	1	19	41	15.9393
(...(((........)))....	chr1:29475329-29475569(-)$1	1	106	128	15.9525
(.(((((........)))))..	chr19:1106492-1106738(+)$1	1	12	34	14.6245
.((((((........))).)))	chr6:33258019-33258305(+)$1	1	232	254	15.9183
(...(((........)))....	chr19:50059473-50059729(-)$1	1	156	178	13.0803
(.(((((........)))))))	chr11:64533291-64533537(-)$1	1	26	48	14.8160
(.(((((........))))).)	chr19:55998126-55998412(+)$1	1	40	62	14.7465
....(((........)))))))	chr19:10940863-10941116(+)$1	1	47	69	16.0261
((((.((........)))))))	chr7:99751453-99751726(+)$1	1	210	232	13.6697
((((.((........)))))))	chr19:45412375-45412681(+)$1	1	94	116	14.9620
(...(((........))).)).	chr16:88876730-88876962(-)$1	1	156	178	15.5982
((..(((........)))))))	chr20:2641077-2641312(-)$1	1	91	113	16.3815
..((.((........)).)).)	chr11:67379490-67379746(+)$1	1	26	48	13.5333
((..(((........))).)))	chr19:18699707-18699997(+)$1	1	15	37	15.7820
(.(((((........))))).)	chr1:110950104-110950404(-)$1	1	16	38	14.5627
((..(((........)))..))	chrX:153195462-153195783(-)$1	1	37	59	15.4576
(((.(((........))).)..	chr12:53689529-53689744(+)$1	1	19	41	15.7039
(..((((........))))..)	chr11:65421934-65422253(-)$1	1	194	216	14.3460
.((((((........)))))))	chr14:21484915-21485227(-)$1	1	217	239	13.6412
.((((((........)))))).	chr7:99057627-99057900(-)$1	1	51	73	12.7185
))(((((........)))))..	chr21:40551749-40552011(-)$1	1	215	237	13.0268
(((((((........)))))))	chr7:99690814-99691072(-)$1	1	176	198	15.3148
(.(((((........))))).)	chr1:155290199-155290477(+)$1	1	76	98	14.5627
(((.(((........))).)))	chr9:140002739-140002994(+)$1	1	162	184	15.6111
(((.(((........)))..))	chr6:31604756-31604981(+)$1	1	122	144	15.7418
(((((((........))).)))	chr7:150840351-150840627(+)$1	1	177	199	15.0035
(.((.((........)).)).)	chr9:130931228-130931475(-)$1	1	50	72	13.6690
..(((((........)))))..	chr9:131396485-131396760(-)$1	1	122	144	14.7081
(((((((........)))))))	chr19:19626934-19627199(+)$1	1	75	97	13.5750
((((.((........)).))))	chr11:63990837-63991122(+)$1	1	230	252	13.6056
(((.(((........)))..))	chr19:50354436-50354729(+)$1	1	94	116	15.6591
(((((((........)))..))	chr20:32868664-32868990(-)$1	1	114	136	15.4862
..(((((........)))))..	chr16:31539720-31539976(+)$1	1	163	185	15.1916
(((.(((........))).)))	chr1:228680736-228681023(+)$1	1	189	211	16.1295
(((((((........)))))))	chr14:23033884-23034137(-)$1	1	193	215	15.3531
((((.((........))..)))	chr6:31526032-31526341(+)$1	1	69	91	14.8316
(((((((........)))))))	chr20:2816602-2816918(-)$1	1	30	52	15.3531
(.(((((........)))))))	chr8:145133559-145133826(+)$1	1	6	28	14.9392
)((.(((........)))))..	chr1:12034747-12034989(+)$1	1	62	84	13.0317
)))((((........))))((.	chr5:1814464-1814676(+)$1	1	91	113	13.2252
((.((((........)))))))	chr22:41347279-41347577(+)$1	1	182	204	14.3507
(((((((........)))))))	chr19:39405991-39406249(-)$1	1	129	151	15.3531
(.(((((........)))))..	chr19:1106461-1106692(+)$1	1	43	65	14.6245
.(((.((........)))))..	chr18:12720529-12720778(+)$1	1	136	158	14.5525
.(.((((........)))).).	chrX:153678532-153678768(+)$1	1	153	175	14.4489
(((..((........))..)))	chr1:113246312-113246529(-)$1	1	45	67	15.0127

#PSSM
g : 0.18	d : 0.15	h : 0.09	c : 0.09	b : 0.09	! : 0.08	e : 0.06	f : 0.05	" : 0.05	= : 0.03	& : 0.01	# : 0.01	$ : 0.01	i : 0.01	a : 0.01	
g : 0.16	d : 0.15	[ : 0.13	" : 0.09	h : 0.08	c : 0.08	b : 0.05	! : 0.05	e : 0.05	f : 0.05	= : 0.03	# : 0.01	i : 0.01	a : 0.01	
e : 0.21	g : 0.15	! : 0.11	h : 0.08	d : 0.08	b : 0.06	c : 0.06	" : 0.06	f : 0.05	[ : 0.03	= : 0.01	# : 0.01	a : 0.01	i : 0.01	
e : 0.19	[ : 0.16	g : 0.13	d : 0.13	! : 0.11	" : 0.06	f : 0.05	c : 0.03	h : 0.03	b : 0.03	# : 0.01	i : 0.01	
c : 0.39	e : 0.18	[ : 0.11	g : 0.09	d : 0.09	! : 0.03	f : 0.03	i : 0.01	h : 0.01	
c : 0.39	e : 0.18	b : 0.15	g : 0.09	d : 0.08	f : 0.03	[ : 0.01	i : 0.01	h : 0.01	
c : 0.39	e : 0.18	b : 0.15	g : 0.09	d : 0.08	f : 0.03	a : 0.01	i : 0.01	h : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.39	e : 0.18	b : 0.15	g : 0.09	d : 0.08	f : 0.03	a : 0.01	i : 0.01	h : 0.01	
c : 0.39	e : 0.18	b : 0.15	g : 0.09	d : 0.08	f : 0.03	] : 0.01	i : 0.01	h : 0.01	
c : 0.41	e : 0.18	g : 0.11	d : 0.09	2 : 0.05	] : 0.05	h : 0.03	f : 0.03	i : 0.01	
e : 0.18	2 : 0.18	g : 0.15	] : 0.15	d : 0.11	b : 0.05	3 : 0.03	h : 0.03	f : 0.03	4 : 0.01	5 : 0.01	i : 0.01	c : 0.01	
g : 0.18	e : 0.18	2 : 0.16	b : 0.09	d : 0.06	c : 0.06	h : 0.05	f : 0.05	3 : 0.03	= : 0.01	4 : 0.01	5 : 0.01	a : 0.01	i : 0.01	] : 0.01	
g : 0.19	d : 0.11	] : 0.09	2 : 0.09	h : 0.08	b : 0.06	c : 0.06	3 : 0.05	f : 0.05	e : 0.03	: : 0.03	= : 0.01	4 : 0.01	5 : 0.01	> : 0.01	i : 0.01	a : 0.01	
g : 0.19	d : 0.15	c : 0.09	h : 0.08	2 : 0.08	e : 0.06	b : 0.06	4 : 0.03	5 : 0.03	: : 0.03	7 : 0.01	= : 0.01	] : 0.01	> : 0.01	i : 0.01	f : 0.01	a : 0.01	3 : 0.01	[ : 0.01	

#score	893.5841124376756
#seq	60
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_CDS_m3_run1.txt

#BEAR
cccqqqqqqqqccc	chr19:8322713-8322970(+)$1	257	217	231	13.5946
eeeqqqqqqqqeee	chr17:66526473-66526754(+)$1	281	93	107	12.7926
cccqqqqqqqqccc	chr17:4575998-4576257(-)$1	259	71	85	13.5946
dddqqqqqqqqddd	chr17:65105548-65105828(-)$1	280	125	139	13.0993
[bbqqqqqqqqbbc	chr14:65406280-65406489(-)$1	209	43	57	12.3274
cccqqqqqqqqccc	chr19:15353783-15354032(-)$1	249	125	139	13.5946
cccqqqqqqqqccc	chr3:48461309-48461582(-)$1	273	72	86	13.5946
dddqqqqqqqqddd	chr11:61537734-61537978(+)$1	244	218	232	13.0993
eeeqqqqqqqqeee	chr20:43029823-43030115(+)$1	292	271	285	12.7926
cccqqqqqqqqccc	chr1:156756325-156756634(+)$1	309	163	177	13.5946
dddqqqqqqqqddd	chr13:39586853-39587142(-)$1	289	163	177	13.0993
gggqqqqqqqqggg	chr8:145065437-145065655(+)$1	218	141	155	12.8978
eeeqqqqqqqqeee	chr12:49444444-49444668(-)$1	224	37	51	12.7926
eeeqqqqqqqqeee	chr10:77158789-77159027(-)$1	238	222	236	12.7926
dddqqqqqqqqddd	chr13:115089679-115089998(+)$1	319	242	256	13.0993
c[aqqqqqqqqa]c	chr17:55333977-55334264(+)$1	287	149	163	12.9747
cccqqqqqqqqccc	chr19:14675540-14675771(+)$1	231	207	221	13.5946
cccqqqqqqqqccc	chr17:79993662-79993940(-)$1	278	27	41	13.5946
dddqqqqqqqqddd	chr3:47452163-47452441(+)$1	278	186	200	13.0993
cccqqqqqqqqccc	chr19:50435826-50436088(+)$1	262	159	173	13.5946
fffqqqqqqqqfff	chr17:76967604-76967857(-)$1	253	174	188	12.4539
cccqqqqqqqqccc	chr1:153923961-153924211(-)$1	250	191	205	13.5946
gggqqqqqqqqggg	chr17:47375745-47376014(-)$1	269	196	210	12.8978
cccqqqqqqqqccc	chr11:61538977-61539238(+)$1	261	101	115	13.5946
[bbqqqqqqqqbb]	chr17:79826492-79826773(-)$1	281	77	91	12.1583
eeeqqqqqqqqeee	chr2:242694513-242694842(+)$1	329	142	156	12.7926
c[aqqqqqqqqa]c	chr2:74653337-74653605(-)$1	268	147	161	12.9747
[bbqqqqqqqqbb]	chr12:122618053-122618313(+)$1	260	193	207	12.1583
cccqqqqqqqqccc	chr3:185797719-185797985(-)$1	266	167	181	13.5946
fffqqqqqqqqfff	chr9:107602673-107602975(-)$1	302	79	93	12.4539
eeeqqqqqqqqeee	chr19:35775796-35776127(+)$1	331	90	104	12.7926
ggaqqqqqqqqa]g	chr14:75248205-75248526(+)$1	321	219	233	12.8323
gggqqqqqqqqggg	chr8:145065427-145065637(+)$1	210	151	165	12.8978
fffqqqqqqqqfff	chr17:7416327-7416622(+)$1	295	72	86	12.4539
cccqqqqqqqqccc	chr8:125569665-125570028(-)$1	363	71	85	13.5946
cccqqqqqqqqccc	chr16:28993631-28993965(+)$1	334	10	24	13.5946
cccqqqqqqqqccc	chr12:53707981-53708224(-)$1	243	69	83	13.5946
eeeqqqqqqqqeee	chr16:30975963-30976268(+)$1	305	216	230	12.7926
dddqqqqqqqqddd	chr3:184035121-184035338(+)$1	217	107	121	13.0993
!bbqqqqqqqqbb2	chr19:15350698-15350934(-)$1	236	53	67	11.8996
eeeqqqqqqqqeee	chr19:17346750-17347013(-)$1	263	163	177	12.7926
dddqqqqqqqqddd	chr3:184035008-184035255(+)$1	247	220	234	13.0993
dddqqqqqqqqddd	chr3:47452306-47452553(+)$1	247	43	57	13.0993
dddqqqqqqqqddd	chr7:143079958-143080235(+)$1	277	91	105	13.0993
dddqqqqqqqqddd	chr19:2248362-2248637(+)$1	275	13	27	13.0993
cccqqqqqqqqccc	chr2:21231626-21231867(-)$1	241	164	178	13.5946
cccqqqqqqqqccc	chr19:54969631-54969880(+)$1	249	152	166	13.5946
dddqqqqqqqqddd	chr7:100172536-100172837(-)$1	301	108	122	13.0993
cccqqqqqqqqccc	chr22:41574527-41574774(+)$1	247	80	94	13.5946
!!aqqqqqqqqa22	chrX:129147300-129147544(+)$1	244	115	129	12.2141
[bbqqqqqqqqbb]	chr10:102744458-102744747(+)$1	289	173	187	12.1583
fffqqqqqqqqfff	chr19:10683397-10683708(-)$1	311	198	212	12.4539
cccqqqqqqqqccc	chr19:54969680-54969987(+)$1	307	103	117	13.5946
[bbqqqqqqqqbb]	chr12:125302039-125302343(-)$1	304	8	22	12.1583
cccqqqqqqqqccc	chr16:30735034-30735287(+)$1	253	55	69	13.5946
eeeqqqqqqqqeee	chr22:21173940-21174186(-)$1	246	18	32	12.7926
dddqqqqqqqqddd	chr5:140953248-140953501(-)$1	253	218	232	13.0993
cccqqqqqqqqccc	chr12:122252175-122252455(+)$1	280	49	63	13.5946
eeeqqqqqqqqeee	chr16:2569580-2569878(+)$1	298	15	29	12.7926
cccqqqqqqqqccc	chr19:15353665-15353939(-)$1	274	32	46	13.5946
dddqqqqqqqqddd	chr16:30748737-30749012(+)$1	275	91	105	13.0993
fffqqqqqqqqfff	chr10:24762113-24762445(+)$1	332	297	311	12.4539
gggqqqqqqqqggg	chr8:145065455-145065756(+)$1	301	123	137	12.8978
dddqqqqqqqqddd	chr12:124827456-124827704(-)$1	248	95	109	13.0993
iiiqqqqqqqqiii	chr5:31526710-31526953(-)$1	243	36	50	12.8220
dddqqqqqqqqddd	chr7:91570245-91570538(+)$1	293	1	15	13.0993
eeeqqqqqqqqeee	chr7:73011733-73011947(-)$1	214	178	192	12.7926
[bbqqqqqqqqbb]	chr11:64897729-64897951(-)$1	222	184	198	12.1583
cccqqqqqqqqccc	chr6:138752288-138752570(-)$1	282	166	180	13.5946
cccqqqqqqqqccc	chr17:30469866-30470173(+)$1	307	11	25	13.5946
cccqqqqqqqqccc	chr15:90328381-90328684(-)$1	303	261	275	13.5946
eeeqqqqqqqqeee	chr16:2819109-2819316(+)$1	207	130	144	12.7926
dddqqqqqqqqddd	chr12:7045543-7045756(+)$1	213	10	24	13.0993
ddaqqqqqqqqa]d	chr2:220046979-220047266(+)$1	287	94	108	12.9204
cccqqqqqqqqccc	chr17:40986745-40986970(+)$1	225	186	200	13.5946
fffqqqqqqqqfff	chr12:49420761-49421111(-)$1	350	126	140	12.4539
dddqqqqqqqqddd	chr9:139342887-139343181(-)$1	294	130	144	13.0993
gggqqqqqqqqggg	chr16:85689262-85689487(+)$1	225	56	70	12.8978

#otherMatches

#Seq PSSM
GCCUCACCAUUGGU	chr19:8322713-8322970(+)$1	257	217	231	13.5946
AGUUUUGUGUCACU	chr17:66526473-66526754(+)$1	281	93	107	12.7926
UGGACCUCCCACCA	chr17:4575998-4576257(-)$1	259	71	85	13.5946
AGACACAUAAAUCU	chr17:65105548-65105828(-)$1	280	125	139	13.0993
CGAGCAUCCUGUCU	chr14:65406280-65406489(-)$1	209	43	57	12.3274
gcccccuccacggc	chr19:15353783-15354032(-)$1	249	125	139	13.5946
AGUCCUUCCCUGCU	chr3:48461309-48461582(-)$1	273	72	86	13.5946
GCAGUCCCAGAUGC	chr11:61537734-61537978(+)$1	244	218	232	13.0993
UUGAGAAUGUGCAG	chr20:43029823-43030115(+)$1	292	271	285	12.7926
UGCCUUCUCCCGCA	chr1:156756325-156756634(+)$1	309	163	177	13.5946
CCCUCAUUCCCGGG	chr13:39586853-39587142(-)$1	289	163	177	13.0993
CCUACCCCCAAGGG	chr8:145065437-145065655(+)$1	218	141	155	12.8978
UGUAACUCUUCAUG	chr12:49444444-49444668(-)$1	224	37	51	12.7926
CAGACAAACUGCUG	chr10:77158789-77159027(-)$1	238	222	236	12.7926
UUCCUUCUCCAGAA	chr13:115089679-115089998(+)$1	319	242	256	13.0993
CACCUCGGGCAGCG	chr17:55333977-55334264(+)$1	287	149	163	12.9747
GCUUCCUCUUCAGC	chr19:14675540-14675771(+)$1	231	207	221	13.5946
CUCUUUCUGCUGAG	chr17:79993662-79993940(-)$1	278	27	41	13.5946
GUCCCGCUCAAGAC	chr3:47452163-47452441(+)$1	278	186	200	13.0993
GGCCAUCUACUGCC	chr19:50435826-50436088(+)$1	262	159	173	13.5946
UGACCAACUCCUCA	chr17:76967604-76967857(-)$1	253	174	188	12.4539
GCCUCCUCCUUGGC	chr1:153923961-153924211(-)$1	250	191	205	13.5946
UGCGGCACCUGGCA	chr17:47375745-47376014(-)$1	269	196	210	12.8978
CAGCCCUGCCUCUG	chr11:61538977-61539238(+)$1	261	101	115	13.5946
UGUCCCCCCCAGCC	chr17:79826492-79826773(-)$1	281	77	91	12.1583
UGGCCCACCCACCA	chr2:242694513-242694842(+)$1	329	142	156	12.7926
UUGCCCCCCUCCCA	chr2:74653337-74653605(-)$1	268	147	161	12.9747
CUGUCAUCACCCAC	chr12:122618053-122618313(+)$1	260	193	207	12.1583
GAAUCCCCUAUUUC	chr3:185797719-185797985(-)$1	266	167	181	13.5946
AAAAUAAGAUGuuu	chr9:107602673-107602975(-)$1	302	79	93	12.4539
GCAUUUUCUGCUGC	chr19:35775796-35776127(+)$1	331	90	104	12.7926
UGCCCCCACCUGUU	chr14:75248205-75248526(+)$1	321	219	233	12.8323
CCUACCCCCAAGGG	chr8:145065427-145065637(+)$1	210	151	165	12.8978
GGGGCUACACACCC	chr17:7416327-7416622(+)$1	295	72	86	12.4539
GGCAUGUUCCCGUC	chr8:125569665-125570028(-)$1	363	71	85	13.5946
GGGACAAACCCCCC	chr16:28993631-28993965(+)$1	334	10	24	13.5946
GCCUCUGUCUUGGC	chr12:53707981-53708224(-)$1	243	69	83	13.5946
UGGAAUCGCUACCA	chr16:30975963-30976268(+)$1	305	216	230	12.7926
AUCCCUUCCCAGAU	chr3:184035121-184035338(+)$1	217	107	121	13.0993
AGCAGUUCUAAGCC	chr19:15350698-15350934(-)$1	236	53	67	11.8996
ACUCGCUGCCUGGU	chr19:17346750-17347013(-)$1	263	163	177	12.7926
AUCCCUUCCCAGAU	chr3:184035008-184035255(+)$1	247	220	234	13.0993
GUCCCGCUCAAGAC	chr3:47452306-47452553(+)$1	247	43	57	13.0993
ACACAGUUCCAUGU	chr7:143079958-143080235(+)$1	277	91	105	13.0993
CCCAACCUCCCGGG	chr19:2248362-2248637(+)$1	275	13	27	13.0993
GCUGAACAGUGAGC	chr2:21231626-21231867(-)$1	241	164	178	13.5946
GGCCUCCCCCAGCC	chr19:54969631-54969880(+)$1	249	152	166	13.5946
GCCCCAAAAUCGGC	chr7:100172536-100172837(-)$1	301	108	122	13.0993
AGAUCCCUAAUUCU	chr22:41574527-41574774(+)$1	247	80	94	13.5946
UUCCCCUCUCCGUC	chrX:129147300-129147544(+)$1	244	115	129	12.2141
GUCAUUCUCAAGAG	chr10:102744458-102744747(+)$1	289	173	187	12.1583
UAUAUGAAGAAAUA	chr19:10683397-10683708(-)$1	311	198	212	12.4539
GGCCUCCCCCAGCC	chr19:54969680-54969987(+)$1	307	103	117	13.5946
GGGCAGCUGUUCCG	chr12:125302039-125302343(-)$1	304	8	22	12.1583
GCCCCAGCCUCGGC	chr16:30735034-30735287(+)$1	253	55	69	13.5946
AUCCCAUGCCUGAU	chr22:21173940-21174186(-)$1	246	18	32	12.7926
GGAAUGCCACCUCC	chr5:140953248-140953501(-)$1	253	218	232	13.0993
GGCUUCCCCAugcc	chr12:122252175-122252455(+)$1	280	49	63	13.5946
CGGCUUUGCCAUCG	chr16:2569580-2569878(+)$1	298	15	29	12.7926
gcccccuccacggc	chr19:15353665-15353939(-)$1	274	32	46	13.5946
cagauuccuccuug	chr16:30748737-30749012(+)$1	275	91	105	13.0993
UUUAGAAAGAAGAG	chr10:24762113-24762445(+)$1	332	297	311	12.4539
CCUACCCCCAAGGG	chr8:145065455-145065756(+)$1	301	123	137	12.8978
CCACAUCCCCCUGG	chr12:124827456-124827704(-)$1	248	95	109	13.0993
GCUUCACCCUCAGC	chr5:31526710-31526953(-)$1	243	36	50	12.8220
CGCCAGUGAGCGCG	chr7:91570245-91570538(+)$1	293	1	15	13.0993
UGCCUGCUCCUGCA	chr7:73011733-73011947(-)$1	214	178	192	12.7926
CCCCCAGCUCAGGA	chr11:64897729-64897951(-)$1	222	184	198	12.1583
UGACCCCAAAUUCA	chr6:138752288-138752570(-)$1	282	166	180	13.5946
CGCCUUUCUCCGCG	chr17:30469866-30470173(+)$1	307	11	25	13.5946
GUCUAGUUCCUGAU	chr15:90328381-90328684(-)$1	303	261	275	13.5946
UGCCCAAACCUGCA	chr16:2819109-2819316(+)$1	207	130	144	12.7926
AUUCAUCCUCUAGU	chr12:7045543-7045756(+)$1	213	10	24	13.0993
CACUUUGCCUUGUU	chr2:220046979-220047266(+)$1	287	94	108	12.9204
AGGUCCUCUGUCCU	chr17:40986745-40986970(+)$1	225	186	200	13.5946
GCACCUUCUCCUGC	chr12:49420761-49421111(-)$1	350	126	140	12.4539
ACCUCCAUCCUGGU	chr9:139342887-139343181(-)$1	294	130	144	13.0993
CUUCUCUGCACAGG	chr16:85689262-85689487(+)$1	225	56	70	12.8978

#DB
(((........)))	chr19:8322713-8322970(+)$1	1	217	231	13.5946
(((........)))	chr17:66526473-66526754(+)$1	1	93	107	12.7926
(((........)))	chr17:4575998-4576257(-)$1	1	71	85	13.5946
(((........)))	chr17:65105548-65105828(-)$1	1	125	139	13.0993
.((........)))	chr14:65406280-65406489(-)$1	1	43	57	12.3274
(((........)))	chr19:15353783-15354032(-)$1	1	125	139	13.5946
(((........)))	chr3:48461309-48461582(-)$1	1	72	86	13.5946
(((........)))	chr11:61537734-61537978(+)$1	1	218	232	13.0993
(((........)))	chr20:43029823-43030115(+)$1	1	271	285	12.7926
(((........)))	chr1:156756325-156756634(+)$1	1	163	177	13.5946
(((........)))	chr13:39586853-39587142(-)$1	1	163	177	13.0993
(((........)))	chr8:145065437-145065655(+)$1	1	141	155	12.8978
(((........)))	chr12:49444444-49444668(-)$1	1	37	51	12.7926
(((........)))	chr10:77158789-77159027(-)$1	1	222	236	12.7926
(((........)))	chr13:115089679-115089998(+)$1	1	242	256	13.0993
(.(........).)	chr17:55333977-55334264(+)$1	1	149	163	12.9747
(((........)))	chr19:14675540-14675771(+)$1	1	207	221	13.5946
(((........)))	chr17:79993662-79993940(-)$1	1	27	41	13.5946
(((........)))	chr3:47452163-47452441(+)$1	1	186	200	13.0993
(((........)))	chr19:50435826-50436088(+)$1	1	159	173	13.5946
(((........)))	chr17:76967604-76967857(-)$1	1	174	188	12.4539
(((........)))	chr1:153923961-153924211(-)$1	1	191	205	13.5946
(((........)))	chr17:47375745-47376014(-)$1	1	196	210	12.8978
(((........)))	chr11:61538977-61539238(+)$1	1	101	115	13.5946
.((........)).	chr17:79826492-79826773(-)$1	1	77	91	12.1583
(((........)))	chr2:242694513-242694842(+)$1	1	142	156	12.7926
(.(........).)	chr2:74653337-74653605(-)$1	1	147	161	12.9747
.((........)).	chr12:122618053-122618313(+)$1	1	193	207	12.1583
(((........)))	chr3:185797719-185797985(-)$1	1	167	181	13.5946
(((........)))	chr9:107602673-107602975(-)$1	1	79	93	12.4539
(((........)))	chr19:35775796-35776127(+)$1	1	90	104	12.7926
(((........).)	chr14:75248205-75248526(+)$1	1	219	233	12.8323
(((........)))	chr8:145065427-145065637(+)$1	1	151	165	12.8978
(((........)))	chr17:7416327-7416622(+)$1	1	72	86	12.4539
(((........)))	chr8:125569665-125570028(-)$1	1	71	85	13.5946
(((........)))	chr16:28993631-28993965(+)$1	1	10	24	13.5946
(((........)))	chr12:53707981-53708224(-)$1	1	69	83	13.5946
(((........)))	chr16:30975963-30976268(+)$1	1	216	230	12.7926
(((........)))	chr3:184035121-184035338(+)$1	1	107	121	13.0993
.((........)).	chr19:15350698-15350934(-)$1	1	53	67	11.8996
(((........)))	chr19:17346750-17347013(-)$1	1	163	177	12.7926
(((........)))	chr3:184035008-184035255(+)$1	1	220	234	13.0993
(((........)))	chr3:47452306-47452553(+)$1	1	43	57	13.0993
(((........)))	chr7:143079958-143080235(+)$1	1	91	105	13.0993
(((........)))	chr19:2248362-2248637(+)$1	1	13	27	13.0993
(((........)))	chr2:21231626-21231867(-)$1	1	164	178	13.5946
(((........)))	chr19:54969631-54969880(+)$1	1	152	166	13.5946
(((........)))	chr7:100172536-100172837(-)$1	1	108	122	13.0993
(((........)))	chr22:41574527-41574774(+)$1	1	80	94	13.5946
..(........)..	chrX:129147300-129147544(+)$1	1	115	129	12.2141
.((........)).	chr10:102744458-102744747(+)$1	1	173	187	12.1583
(((........)))	chr19:10683397-10683708(-)$1	1	198	212	12.4539
(((........)))	chr19:54969680-54969987(+)$1	1	103	117	13.5946
.((........)).	chr12:125302039-125302343(-)$1	1	8	22	12.1583
(((........)))	chr16:30735034-30735287(+)$1	1	55	69	13.5946
(((........)))	chr22:21173940-21174186(-)$1	1	18	32	12.7926
(((........)))	chr5:140953248-140953501(-)$1	1	218	232	13.0993
(((........)))	chr12:122252175-122252455(+)$1	1	49	63	13.5946
(((........)))	chr16:2569580-2569878(+)$1	1	15	29	12.7926
(((........)))	chr19:15353665-15353939(-)$1	1	32	46	13.5946
(((........)))	chr16:30748737-30749012(+)$1	1	91	105	13.0993
(((........)))	chr10:24762113-24762445(+)$1	1	297	311	12.4539
(((........)))	chr8:145065455-145065756(+)$1	1	123	137	12.8978
(((........)))	chr12:124827456-124827704(-)$1	1	95	109	13.0993
(((........)))	chr5:31526710-31526953(-)$1	1	36	50	12.8220
(((........)))	chr7:91570245-91570538(+)$1	1	1	15	13.0993
(((........)))	chr7:73011733-73011947(-)$1	1	178	192	12.7926
.((........)).	chr11:64897729-64897951(-)$1	1	184	198	12.1583
(((........)))	chr6:138752288-138752570(-)$1	1	166	180	13.5946
(((........)))	chr17:30469866-30470173(+)$1	1	11	25	13.5946
(((........)))	chr15:90328381-90328684(-)$1	1	261	275	13.5946
(((........)))	chr16:2819109-2819316(+)$1	1	130	144	12.7926
(((........)))	chr12:7045543-7045756(+)$1	1	10	24	13.0993
(((........).)	chr2:220046979-220047266(+)$1	1	94	108	12.9204
(((........)))	chr17:40986745-40986970(+)$1	1	186	200	13.5946
(((........)))	chr12:49420761-49421111(-)$1	1	126	140	12.4539
(((........)))	chr9:139342887-139343181(-)$1	1	130	144	13.0993
(((........)))	chr16:85689262-85689487(+)$1	1	56	70	12.8978

#PSSM
c : 0.34	d : 0.23	e : 0.15	[ : 0.07	g : 0.07	f : 0.07	! : 0.02	i : 0.01	
c : 0.32	d : 0.23	e : 0.15	b : 0.08	g : 0.07	f : 0.07	[ : 0.02	! : 0.01	i : 0.01	
c : 0.32	d : 0.21	e : 0.15	b : 0.08	f : 0.07	g : 0.06	a : 0.06	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.32	d : 0.21	e : 0.15	b : 0.08	f : 0.07	g : 0.06	a : 0.06	i : 0.01	
c : 0.32	d : 0.21	e : 0.15	b : 0.08	f : 0.07	g : 0.06	] : 0.05	2 : 0.01	i : 0.01	
c : 0.35	d : 0.23	e : 0.15	g : 0.07	f : 0.07	] : 0.06	2 : 0.02	i : 0.01	

#score	1017.0368211651671
#seq	78
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_UTR_m2_run1.txt

#BEAR
+ffffff!!bb[cccooooooccc]bb22ffffff	chrX:48770682-48770938(-)$1	256	103	138	12.0046
========[bb[cccnnnnncccbb]=========	chr12:72003581-72003843(-)$1	262	148	183	15.0866
:eeeee[dddd[cccooooooccc]dddd]eeeee	chr14:39617050-39617315(-)$1	265	115	150	11.0251
iiiiiiccc"""cccooooooccc333ccc>>>>>	chr6:170844132-170844415(-)$1	283	155	190	15.6554
D:ffffff####cccooooooccc333ffffff:d	chr2:98272936-98273224(-)$1	288	70	105	11.5410
ee!!ccc####ddddoooooodddd]ccc4444ee	chr19:12811285-12811561(-)$1	276	149	184	13.4099
$$$$$==========oooooo==========4444	chr20:33432448-33432756(-)$1	308	121	156	17.1762
==========!!cccmmmmccc22===========	chr10:70551031-70551339(+)$1	308	234	269	16.0253
""ggggggg"""eeeeemmmmeeeee22ggggggg	chr8:23429528-23429775(+)$1	247	124	159	11.8379
####dddd[bb!!bboooooobb22bb]dddd333	chrX:151121536-151121792(-)$1	256	70	105	12.8183
eee!!eeeee"""bboooooobb333eeeee22ee	chr11:14479018-14479290(-)$1	272	143	178	13.5235
ggggg[ccc[bbcccooooooccc]bb]ccc]ggg	chr1:113212900-113213157(+)$1	257	183	218	14.2857
ebb[ggggggg[ccclllccc333ggggggg22bb	chr16:28977571-28977819(+)$1	248	140	175	12.1324
================nnnnn==============	chr17:79845688-79845934(-)$1	246	160	195	17.0342
g"""ccc$$$$$ddddmmmmddddccc]ggggggg	chr9:135973055-135973349(-)$1	294	182	217	11.4931
========####ddddllldddd4444========	chr2:183790122-183790393(-)$1	271	85	120	16.4743
iiiiiiii!!a[cccooooooccc]a22iiiiiii	chr3:142775368-142775627(+)$1	259	1	36	17.5232
ccc####gggggggrrrrrrrrrggggggg4444c	chr12:131274228-131274503(-)$1	275	132	167	11.3410
eeee[ccc####cccnnnnnccc4444ccc]eeee	chr4:69179325-69179588(-)$1	263	86	121	12.4178
cc==========dddd]cccbb]a]==========	chrX:48779437-48779692(-)$1	255	79	114	13.0559
!ccc!!==========nnnnn==========22cc	chr17:25640191-25640400(+)$1	209	69	104	15.1158
:============[aqqqqqqqqa]==========	chr19:1009739-1010057(-)$1	318	195	230	13.2592
##iiiiiiiii[ddddnnnnnddddiiiiiiiiid	chr1:47023218-47023468(-)$1	250	115	150	14.1452
===========!!bboooooobb]===========	chr7:56169249-56169504(-)$1	255	192	227	18.9249
ccc####eeeee[bboooooobb]eeeee]ccc]e	chr22:22051446-22051719(+)$1	273	135	170	12.0252
======[==========mmmm==========]===	chr13:107195708-107195982(-)$1	274	12	47	16.4371
dd[eeeee!!eeeeeooooooeeeee333eeeee]	chr5:130977602-130977836(-)$1	234	119	154	11.7976
===[eeeee####bboooooobb333eeeee]===	chrX:70685459-70685747(+)$1	288	143	178	15.6245
=========="""ccclllccc333==========	chr14:73586542-73586830(+)$1	288	18	53	17.8527
eccc!!ccc"""ccclllccc333ccc22ccc333	chrX:48316875-48317126(-)$1	251	82	117	12.7268
""dddd!!gggggggooooooggggggg22dddd5	chr17:79991712-79991989(+)$1	277	203	238	11.5199
bb"""ggggggg[bboooooobb]ggggggg>>>>	chr6:31698288-31698562(-)$1	274	134	169	13.9617
::==========ddddllldddd333=========	chr15:45010157-45010417(+)$1	260	140	175	14.7824
D:===========!!bblllbb22===========	chr3:50367418-50367744(-)$1	326	53	88	13.5388
eeggggggg"""ddddnnnnndddd333ggggggg	chr1:27108257-27108473(+)$1	216	130	165	13.4723
b[============ssssssssss===========	chr16:31202187-31202519(+)$1	332	52	87	13.6334
!ggggggg"""eeeeeooooooeeeee]ggggggg	chr12:80168023-80168267(-)$1	244	24	59	13.8430
"""bb[ccc"""ccclllccc]ccc]bb333ccc]	chr22:38879640-38879866(-)$1	226	24	59	11.9943
EE:ggggggg"""bboooooobb333ggggggg:f	chr22:21307066-21307287(+)$1	221	96	131	12.4335
eeeee==========oooooo==========::DD	chr19:40738638-40738867(-)$1	229	47	82	12.2972
iiiiiiii[bb####bblllbb333bbiiiiiiii	chr17:79876227-79876518(-)$1	291	195	230	13.5608
:::iiiiiiiii[bboooooobb22iiiiiiiiiH	chr6:36936263-36936636(-)$1	373	84	119	13.3994
::==============mmmm==============:	chr11:64533094-64533359(-)$1	265	175	210	13.8153
========[ffffffooooooffffff22======	chr22:45737114-45737353(+)$1	239	19	54	14.9133
c[iiiiiiiii[aqqqqqqqqaiiiiiiiii]ccc	chr3:9986082-9986321(+)$1	239	105	140	12.1899
=================mmmm==============	chr16:29821947-29822226(+)$1	279	35	70	16.5596
#iiiiiiiii!!ddddmmmmdddd4444iiiiiii	chr7:914350-914582(+)$1	232	44	79	14.4043
ggg[ccc$$$$$ddddlllddddccc333gggggg	chr20:45837933-45838183(-)$1	250	196	231	12.2803
bb!!ggggggg[cccooooooccc]ggggggg22b	chr14:55532635-55532896(+)$1	261	204	239	15.4471
======[==========mmmm==========]===	chr13:107195907-107196163(-)$1	256	193	228	16.4371
iiiiiiii####cccooooooccc333iiiiiiii	chr14:70238174-70238470(+)$1	296	175	210	18.7087
ccc[ggggggg[ddddmmmmddddggggggg]ccc	chr6:31797841-31798088(+)$1	247	147	182	12.1118

#otherMatches

#Seq PSSM
uuuuGGGUGAGGGGACCCUACUCUGUUAUCCCAAG	chrX:48770682-48770938(-)$1	256	103	138	12.0046
UGUAACUGCCAUGGCCACAAGUCUGCUAGUUGCAC	chr12:72003581-72003843(-)$1	262	148	183	15.0866
cuuuggguauauguauauuguuacuuguagccaaa	chr14:39617050-39617315(-)$1	265	115	150	11.0251
CUUUGGAACUGUACCUUGGAUGGUUUUGUUUAUUA	chr6:170844132-170844415(-)$1	283	155	190	15.6554
GACAUGCACACACAAGUAACAUUGAGCUGCAUGGA	chr2:98272936-98273224(-)$1	288	70	105	11.5410
GUCGCCCUGUCAGCACGCACAUGCUUGGGACCCAC	chr19:12811285-12811561(-)$1	276	149	184	13.4099
UGAGGUGGGGGCCUUGCAUCGGGGGUCCCCAGGGU	chr20:33432448-33432756(-)$1	308	121	156	17.1762
GAACUUUGUUAUAGUUUUAACUCCAAUAAAGUUCA	chr10:70551031-70551339(+)$1	308	234	269	16.0253
AGCCUCCUCCCUGGAUCCUUAGAUCCCAGAGGAGG	chr8:23429528-23429775(+)$1	247	124	159	11.8379
CUUCUAUAUGCUAAGUGAAAUCUGUGUCUGUAAUU	chrX:151121536-151121792(-)$1	256	70	105	12.8183
UUUCAUGUACCAAGACCCUUUUCACAGUACAAUAA	chr11:14479018-14479290(-)$1	272	143	178	13.5235
CAUGAAGCCCUGCUACUGAUUUAGACAAGGUAUUA	chr1:113212900-113213157(+)$1	257	183	218	14.2857
uugagcccaggaguuugagaccagccugggcaaca	chr16:28977571-28977819(+)$1	248	140	175	12.1324
GUUGUGGAGAAGGUGGCGUUUCCACCUUUUCCAUA	chr17:79845688-79845934(-)$1	246	160	195	17.0342
AUUUGUUGUAAAUAGCAAAUGCUAGACUUGAAUAU	chr9:135973055-135973349(-)$1	294	182	217	11.4931
GUUGUAUUUUCUGAUCAUUGGUUUCUUAAUAUGGU	chr2:183790122-183790393(-)$1	271	85	120	16.4743
AAAAAAUCAAAUGAAAGAGCAUUCCUGGGGUUUUU	chr3:142775368-142775627(+)$1	259	1	36	17.5232
CAAUGAUGUGUAUGUCUAAGCCUCAUGUACCGAUU	chr12:131274228-131274503(-)$1	275	132	167	11.3410
UGUUUGUUUUUUUCCUUUUUGGAUCUUGAUUGAUA	chr4:69179325-69179588(-)$1	263	86	121	12.4178
CACCCGGGAUUUGAGUGUAGGGAGUGUGGGAGCAG	chrX:48779437-48779692(-)$1	255	79	114	13.0559
AUAACUAGAAAAAGGAUGUCUUUUUUUUUUUUUUU	chr17:25640191-25640400(+)$1	209	69	104	15.1158
AGCUUGCGCCUCGGGCAUAGGGACGUGGGGUGCAG	chr19:1009739-1010057(-)$1	318	195	230	13.2592
UCCCCAGGUCUUGUGUGGGUGGCACAGAUCUGGGC	chr1:47023218-47023468(-)$1	250	115	150	14.1452
GAUUUUAUUCUUUGUGAGUUAAUUAGAAUAAAGUC	chr7:56169249-56169504(-)$1	255	192	227	18.9249
GGGAGAAGCAGGUUUGGAGAGGACCCUGUGCCCAC	chr22:22051446-22051719(+)$1	273	135	170	12.0252
CUUUUUGuuuuuuuauauauuuauaaaaaaaGAAA	chr13:107195708-107195982(-)$1	274	12	47	16.4371
UCUGGCUUUUAUUAAUAUGUCUUAAUUUUGAGUUU	chr5:130977602-130977836(-)$1	234	119	154	11.7976
UGAUCGCAUUUUUGUAAAAGAACCAUGUGUGUUUA	chrX:70685459-70685747(+)$1	288	143	178	15.6245
UUUUAAGGACUUUGAAUUUUUCUUUGUCUUUGAAG	chr14:73586542-73586830(+)$1	288	18	53	17.8527
aggCCAGGUCCUGGUGGAGCCUUUGCCCAGCCCAG	chrX:48316875-48317126(-)$1	251	82	117	12.7268
GAGGCCGGGAGGGAGCAGGGUCUCCCUCAGGGCUG	chr17:79991712-79991989(+)$1	277	203	238	11.5199
UGGGGUGGGAUGAGUAGGACAACAUAUUUCAGUAA	chr6:31698288-31698562(-)$1	274	134	169	13.9617
UCUGGUUUAUUUUUGUUCCACAAGUUAAAUAAAUC	chr15:45010157-45010417(+)$1	260	140	175	14.7824
GACCCUGCAAACAGAACAGGGUCAUGUUUGCAGGG	chr3:50367418-50367744(-)$1	326	53	88	13.5388
GUUCAGUUGAAGUUCUGAUGAAGAAACACAAUUGA	chr1:27108257-27108473(+)$1	216	130	165	13.4723
AUAGGGGAAUGGGAAUAUGAUAGAUCUUGUUUCUU	chr16:31202187-31202519(+)$1	332	52	87	13.6334
UUAUAGUAGCUGAUUGUAUUAUUGAUUGUAUUGUA	chr12:80168023-80168267(-)$1	244	24	59	13.8430
UCACUUAUAAUUCAGGUUCUGCUGUUGGCUUCAGA	chr22:38879640-38879866(-)$1	226	24	59	11.9943
UGUUGACCGGCUGCCGUUUGAGGACUUUGGUCACC	chr22:21307066-21307287(+)$1	221	96	131	12.4335
GGGUGGGGGGCCUCUGAAAAGGGAGGCUCCUAGGC	chr19:40738638-40738867(-)$1	229	47	82	12.2972
CAGGGCAGUGGCCUUGGUGCCCUACCCCUGCCCUG	chr17:79876227-79876518(-)$1	291	195	230	13.5608
GUUCCAUAUUUGCCAUGUGUCUGUCCAGAUGUGGG	chr6:36936263-36936636(-)$1	373	84	119	13.3994
UUGUGUGUGCACGCAUGUGUGUGUGUGCACGCACU	chr11:64533094-64533359(-)$1	265	175	210	13.8153
UUUGGAAUUAGGUUGUUUUAGUAACUUCUGUUCCA	chr22:45737114-45737353(+)$1	239	19	54	14.9133
UGUGGCGGCCAUGACUGGCUACUGGUUGUCAGAGC	chr3:9986082-9986321(+)$1	239	105	140	12.1899
CUUUUUUUUUUUUUUCCAGGGGGAGGGAGGAGAGG	chr16:29821947-29822226(+)$1	279	35	70	16.5596
uaaaGAUGCAAGAUAGGACUUUGUGCAAUGUAUUU	chr7:914350-914582(+)$1	232	44	79	14.4043
UGUUUCUUUGUGACUGAGCCAGUAGACUCACACUA	chr20:45837933-45838183(-)$1	250	196	231	12.2803
AGACAAACAGGAUUUAUGCUGGAGCUCUGUUUUGC	chr14:55532635-55532896(+)$1	261	204	239	15.4471
CUUUUUGuuuuuuuauauauuuauaaaaaaaGAAA	chr13:107195907-107196163(-)$1	256	193	228	16.4371
UGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUA	chr14:70238174-70238470(+)$1	296	175	210	18.7087
auaauuuguuuauuuaaauaugaaaaauaaaauGU	chr6:31797841-31798088(+)$1	247	147	182	12.1118

#DB
.((((((..((.(((......))).))..))))))	chrX:48770682-48770938(-)$1	1	103	138	12.0046
((((((((.((.(((.....))))).)))))))))	chr12:72003581-72003843(-)$1	1	148	183	15.0866
.(((((.((((.(((......))).)))).)))))	chr14:39617050-39617315(-)$1	1	115	150	11.0251
(((((((((...(((......)))...))).....	chr6:170844132-170844415(-)$1	1	155	190	15.6554
(.((((((....(((......)))...)))))).(	chr2:98272936-98273224(-)$1	1	70	105	11.5410
((..(((....((((......)))).)))....))	chr19:12811285-12811561(-)$1	1	149	184	13.4099
.....((((((((((......))))))))))....	chr20:33432448-33432756(-)$1	1	121	156	17.1762
((((((((((..(((....)))..)))))))))))	chr10:70551031-70551339(+)$1	1	234	269	16.0253
..(((((((...(((((....)))))..)))))))	chr8:23429528-23429775(+)$1	1	124	159	11.8379
....((((.((..((......))..)).))))...	chrX:151121536-151121792(-)$1	1	70	105	12.8183
(((..(((((...((......))...)))))..))	chr11:14479018-14479290(-)$1	1	143	178	13.5235
(((((.(((.(((((......))).)).))).)))	chr1:113212900-113213157(+)$1	1	183	218	14.2857
(((.(((((((.(((...)))...)))))))..))	chr16:28977571-28977819(+)$1	1	140	175	12.1324
((((((((((((((((.....))))))))))))))	chr17:79845688-79845934(-)$1	1	160	195	17.0342
(...(((.....((((....))))))).)))))))	chr9:135973055-135973349(-)$1	1	182	217	11.4931
((((((((....((((...))))....))))))))	chr2:183790122-183790393(-)$1	1	85	120	16.4743
((((((((..(.(((......))).)..)))))))	chr3:142775368-142775627(+)$1	1	1	36	17.5232
(((....(((((((.........)))))))....)	chr12:131274228-131274503(-)$1	1	132	167	11.3410
((((.(((....(((.....)))....))).))))	chr4:69179325-69179588(-)$1	1	86	121	12.4178
)))))))))))))))).))))).).))))))))))	chrX:48779437-48779692(-)$1	1	79	114	13.0559
.(((..((((((((((.....))))))))))..))	chr17:25640191-25640400(+)$1	1	69	104	15.1158
.((((((((((((.(........).))))))))))	chr19:1009739-1010057(-)$1	1	195	230	13.2592
..(((((((((.((((.....))))))))))))))	chr1:47023218-47023468(-)$1	1	115	150	14.1452
(((((((((((..((......)).)))))))))))	chr7:56169249-56169504(-)$1	1	192	227	18.9249
(((....(((((.((......)).))))).))).)	chr22:22051446-22051719(+)$1	1	135	170	12.0252
((((((.((((((((((....)))))))))).)))	chr13:107195708-107195982(-)$1	1	12	47	16.4371
((.(((((..(((((......)))))...))))).	chr5:130977602-130977836(-)$1	1	119	154	11.7976
(((.(((((....((......))...))))).)))	chrX:70685459-70685747(+)$1	1	143	178	15.6245
((((((((((...(((...)))...))))))))))	chr14:73586542-73586830(+)$1	1	18	53	17.8527
((((..(((...(((...)))...)))..)))...	chrX:48316875-48317126(-)$1	1	82	117	12.7268
..((((..(((((((......)))))))..)))).	chr17:79991712-79991989(+)$1	1	203	238	11.5199
((...(((((((.((......)).)))))))....	chr6:31698288-31698562(-)$1	1	134	169	13.9617
..((((((((((((((...))))...)))))))))	chr15:45010157-45010417(+)$1	1	140	175	14.7824
(.(((((((((((..((...))..)))))))))))	chr3:50367418-50367744(-)$1	1	53	88	13.5388
))(((((((...((((.....))))...)))))))	chr1:27108257-27108473(+)$1	1	130	165	13.4723
(.((((((((((((..........)))))))))))	chr16:31202187-31202519(+)$1	1	52	87	13.6334
.(((((((...(((((......))))).)))))))	chr12:80168023-80168267(-)$1	1	24	59	13.8430
...((.(((...(((...))).))).))...))).	chr22:38879640-38879866(-)$1	1	24	59	11.9943
((.(((((((...((......))...))))))).(	chr22:21307066-21307287(+)$1	1	96	131	12.4335
)))))((((((((((......))))))))))..))	chr19:40738638-40738867(-)$1	1	47	82	12.2972
((((((((.((....((...))...))))))))))	chr17:79876227-79876518(-)$1	1	195	230	13.5608
...(((((((((.((......))..)))))))))(	chr6:36936263-36936636(-)$1	1	84	119	13.3994
..((((((((((((((....)))))))))))))).	chr11:64533094-64533359(-)$1	1	175	210	13.8153
((((((((.((((((......))))))..))))))	chr22:45737114-45737353(+)$1	1	19	54	14.9133
(.(((((((((.(........)))))))))).)))	chr3:9986082-9986321(+)$1	1	105	140	12.1899
(((((((((((((((((....))))))))))))))	chr16:29821947-29822226(+)$1	1	35	70	16.5596
.(((((((((..((((....))))....)))))))	chr7:914350-914582(+)$1	1	44	79	14.4043
(((.(((.....((((...)))))))...))))))	chr20:45837933-45838183(-)$1	1	196	231	12.2803
((..(((((((.(((......))).)))))))..)	chr14:55532635-55532896(+)$1	1	204	239	15.4471
((((((.((((((((((....)))))))))).)))	chr13:107195907-107196163(-)$1	1	193	228	16.4371
((((((((....(((......)))...))))))))	chr14:70238174-70238470(+)$1	1	175	210	18.7087
(((.(((((((.((((....))))))))))).)))	chr6:31797841-31798088(+)$1	1	147	182	12.1118

#PSSM
= : 0.21	e : 0.13	: : 0.09	c : 0.09	i : 0.07	" : 0.05	# : 0.05	g : 0.05	b : 0.05	D : 0.03	! : 0.03	+ : 0.01	$ : 0.01	d : 0.01	E : 0.01	
= : 0.23	e : 0.11	c : 0.11	i : 0.09	: : 0.09	" : 0.07	g : 0.05	b : 0.05	# : 0.03	[ : 0.03	f : 0.01	$ : 0.01	d : 0.01	E : 0.01	
= : 0.32	i : 0.13	g : 0.09	c : 0.09	e : 0.07	" : 0.05	f : 0.03	! : 0.03	: : 0.03	$ : 0.01	# : 0.01	b : 0.01	[ : 0.01	d : 0.01	
= : 0.30	i : 0.15	g : 0.09	e : 0.07	[ : 0.07	! : 0.05	# : 0.05	f : 0.03	" : 0.03	c : 0.03	$ : 0.01	d : 0.01	b : 0.01	
= : 0.30	i : 0.15	g : 0.15	e : 0.07	c : 0.05	! : 0.05	f : 0.03	d : 0.03	# : 0.03	$ : 0.01	[ : 0.01	" : 0.01	b : 0.01	
= : 0.34	i : 0.15	g : 0.15	e : 0.07	c : 0.07	f : 0.03	d : 0.03	[ : 0.03	# : 0.03	! : 0.03	
= : 0.32	c : 0.15	g : 0.15	i : 0.13	[ : 0.05	e : 0.05	f : 0.03	# : 0.03	d : 0.01	! : 0.01	
= : 0.36	g : 0.17	i : 0.13	c : 0.09	e : 0.07	! : 0.03	d : 0.03	$ : 0.03	f : 0.01	# : 0.01	
= : 0.30	g : 0.17	# : 0.09	[ : 0.07	c : 0.07	i : 0.07	! : 0.05	e : 0.05	$ : 0.03	d : 0.01	" : 0.01	
= : 0.30	g : 0.13	" : 0.11	# : 0.11	b : 0.07	i : 0.07	e : 0.03	$ : 0.03	! : 0.03	d : 0.01	[ : 0.01	f : 0.01	
= : 0.26	" : 0.17	# : 0.11	g : 0.11	b : 0.09	i : 0.05	! : 0.03	$ : 0.03	e : 0.03	d : 0.01	a : 0.01	f : 0.01	
= : 0.24	[ : 0.17	" : 0.15	# : 0.11	! : 0.07	g : 0.05	e : 0.05	$ : 0.03	d : 0.01	b : 0.01	i : 0.01	f : 0.01	
c : 0.26	= : 0.21	d : 0.19	e : 0.05	" : 0.05	[ : 0.05	! : 0.03	g : 0.03	# : 0.03	f : 0.01	a : 0.01	
c : 0.28	d : 0.19	= : 0.17	b : 0.15	e : 0.05	g : 0.03	[ : 0.01	! : 0.01	# : 0.01	f : 0.01	q : 0.01	
c : 0.28	d : 0.19	= : 0.15	b : 0.15	e : 0.05	r : 0.01	a : 0.01	g : 0.01	! : 0.01	s : 0.01	# : 0.01	f : 0.01	q : 0.01	
o : 0.42	d : 0.17	= : 0.11	l : 0.05	n : 0.03	e : 0.03	q : 0.03	b : 0.03	m : 0.01	r : 0.01	c : 0.01	s : 0.01	
o : 0.44	l : 0.13	n : 0.11	m : 0.09	= : 0.05	q : 0.03	b : 0.03	e : 0.01	r : 0.01	] : 0.01	s : 0.01	
o : 0.44	m : 0.17	l : 0.17	n : 0.11	q : 0.03	r : 0.01	c : 0.01	s : 0.01	
o : 0.44	m : 0.17	n : 0.11	l : 0.11	c : 0.07	q : 0.03	r : 0.01	s : 0.01	
o : 0.44	m : 0.15	n : 0.11	c : 0.11	d : 0.05	q : 0.03	l : 0.03	r : 0.01	s : 0.01	
o : 0.44	c : 0.13	d : 0.11	m : 0.07	n : 0.07	b : 0.05	q : 0.03	r : 0.01	s : 0.01	= : 0.01	
c : 0.23	b : 0.21	d : 0.17	= : 0.15	e : 0.03	3 : 0.03	r : 0.01	q : 0.01	g : 0.01	s : 0.01	o : 0.01	] : 0.01	f : 0.01	a : 0.01	
c : 0.21	d : 0.17	= : 0.15	b : 0.15	3 : 0.07	e : 0.05	2 : 0.03	r : 0.01	] : 0.01	q : 0.01	g : 0.01	s : 0.01	f : 0.01	i : 0.01	
c : 0.19	= : 0.15	3 : 0.15	d : 0.11	2 : 0.07	e : 0.05	] : 0.05	4 : 0.03	g : 0.03	a : 0.03	b : 0.01	s : 0.01	f : 0.01	i : 0.01	
= : 0.23	3 : 0.17	] : 0.13	g : 0.09	e : 0.07	c : 0.07	d : 0.05	4 : 0.05	2 : 0.03	b : 0.01	f : 0.01	i : 0.01	
= : 0.28	3 : 0.15	g : 0.11	b : 0.07	e : 0.07	] : 0.05	c : 0.05	4 : 0.05	i : 0.05	d : 0.01	a : 0.01	f : 0.01	
= : 0.32	g : 0.13	3 : 0.11	b : 0.09	e : 0.07	c : 0.05	4 : 0.05	i : 0.05	2 : 0.03	d : 0.01	f : 0.01	
= : 0.34	g : 0.13	2 : 0.09	i : 0.09	] : 0.07	c : 0.05	e : 0.05	3 : 0.05	d : 0.01	f : 0.01	b : 0.01	4 : 0.01	
= : 0.34	g : 0.19	i : 0.13	2 : 0.07	c : 0.07	e : 0.05	3 : 0.05	d : 0.03	f : 0.01	
= : 0.36	g : 0.21	i : 0.13	c : 0.07	e : 0.05	f : 0.03	] : 0.03	4 : 0.01	d : 0.01	2 : 0.01	3 : 0.01	
= : 0.36	g : 0.19	i : 0.13	e : 0.07	c : 0.05	f : 0.03	4 : 0.03	d : 0.03	> : 0.01	] : 0.01	3 : 0.01	
= : 0.26	g : 0.13	] : 0.11	i : 0.11	e : 0.05	4 : 0.05	2 : 0.05	c : 0.05	f : 0.03	> : 0.03	d : 0.03	: : 0.01	
= : 0.32	g : 0.13	i : 0.11	2 : 0.07	c : 0.07	e : 0.05	4 : 0.05	f : 0.03	> : 0.03	3 : 0.03	d : 0.01	: : 0.01	
= : 0.32	g : 0.11	i : 0.11	e : 0.09	c : 0.07	> : 0.03	: : 0.03	4 : 0.03	3 : 0.03	f : 0.01	b : 0.01	] : 0.01	d : 0.01	D : 0.01	2 : 0.01	
= : 0.30	g : 0.11	e : 0.09	i : 0.07	c : 0.07	f : 0.03	> : 0.03	d : 0.03	3 : 0.03	b : 0.03	] : 0.03	4 : 0.01	5 : 0.01	D : 0.01	H : 0.01	: : 0.01	

#score	729.0771100663561
#seq	52
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_CDS_m3_run1.txt

#BEAR
ddddmmmmdddd	chr19:1460940-1461181(-)$1	241	174	186	9.3972
eeeemmmmeeee	chr1:11849279-11849525(-)$1	246	124	136	7.1260
ddddmmmmdddd	chr9:136208243-136208520(-)$1	277	55	67	9.3972
eeeemmmmeeee	chr12:120534715-120534967(-)$1	252	182	194	7.1260
ddddmmmmdddd	chr19:47778360-47778637(+)$1	277	0	12	9.3972
eeeemmmmeeee	chr17:47126691-47126970(+)$1	279	165	177	7.1260
ddddmmmmdddd	chr19:51301519-51301788(-)$1	269	126	138	9.3972
ddddmmmmdddd	chr19:47778290-47778560(+)$1	270	201	213	9.3972
ddddmmmmdddd	chr11:770243-770510(-)$1	267	165	177	9.3972
dddd4444dddd	chr17:79826314-79826562(-)$1	248	130	142	6.6983
ddddmmmmdddd	chr17:79890698-79890962(-)$1	264	19	31	9.3972
ddddmmmmdddd	chr17:76117555-76117812(-)$1	257	66	78	9.3972
eeeemmmmeeee	chr16:31501591-31501871(-)$1	280	115	127	7.1260
dddd4444dddd	chr19:1582518-1582758(-)$1	240	159	171	6.6983
ddddmmmmdddd	chr19:55998518-55998769(+)$1	251	53	65	9.3972
eeeemmmmeeee	chr19:8468333-8468646(+)$1	313	128	140	7.1260
ddddllldddd4	chr1:33237159-33237407(+)$1	248	88	100	6.5954
ddddmmmmdddd	chr9:130269177-130269414(-)$1	237	197	209	9.3972
ddddmmmmdddd	chr16:2550236-2550531(+)$1	295	106	118	9.3972
eeeemmmmeeee	chr19:6413633-6413849(-)$1	216	58	70	7.1260
ddddmmmmdddd	chr16:1496204-1496491(-)$1	287	203	215	9.3972
ddddmmmmdddd	chr4:2939873-2940167(-)$1	294	41	53	9.3972
eeeemmmmeeee	chr1:16555447-16555676(-)$1	229	42	54	7.1260
eeeemmmmeeee	chr12:120534542-120534845(-)$1	303	235	247	7.1260
ddddmmmmdddd	chr19:47778235-47778490(+)$1	255	114	126	9.3972
$ddddllldddd	chr17:79826162-79826493(-)$1	331	187	199	6.6017
ddddmmmmdddd	chr9:136208440-136208722(-)$1	282	257	269	9.3972
$ddddllldddd	chrX:53263356-53263619(-)$1	263	151	163	6.6017
ddddmmmmdddd	chr19:1585019-1585292(-)$1	273	174	186	9.3972
ddddmmmmdddd	chr1:15736387-15736695(+)$1	308	192	204	9.3972
ddddmmmmdddd	chrX:152953802-152954150(+)$1	348	242	254	9.3972
$ddddllldddd	chr12:120534784-120535015(-)$1	231	62	74	6.6017
ddddmmmmdddd	chr17:74078562-74078802(-)$1	240	12	24	9.3972

#otherMatches

#Seq PSSM
GGACUAGGGUCC	chr19:1460940-1461181(-)$1	241	174	186	9.3972
CCAGGGUCUUGG	chr1:11849279-11849525(-)$1	246	124	136	7.1260
GGCCUCUCGGCC	chr9:136208243-136208520(-)$1	277	55	67	9.3972
CGGACUGAUUCG	chr12:120534715-120534967(-)$1	252	182	194	7.1260
CGGCACCCGCCG	chr19:47778360-47778637(+)$1	277	0	12	9.3972
AGAGUGUGCUCU	chr17:47126691-47126970(+)$1	279	165	177	7.1260
GCAGCAGGCUGC	chr19:51301519-51301788(-)$1	269	126	138	9.3972
CAGCUCCAGCUG	chr19:47778290-47778560(+)$1	270	201	213	9.3972
GAAGAAAUCUUC	chr11:770243-770510(-)$1	267	165	177	9.3972
UGGCUUCAGGAG	chr17:79826314-79826562(-)$1	248	130	142	6.6983
UUCCCACUGGAA	chr17:79890698-79890962(-)$1	264	19	31	9.3972
GCGGGAGGCUGC	chr17:76117555-76117812(-)$1	257	66	78	9.3972
AGCCGCCUGGCU	chr16:31501591-31501871(-)$1	280	115	127	7.1260
AGGCGGAAGGGG	chr19:1582518-1582758(-)$1	240	159	171	6.6983
GAGGUCAGCCUC	chr19:55998518-55998769(+)$1	251	53	65	9.3972
CGUGCGUGCACG	chr19:8468333-8468646(+)$1	313	128	140	7.1260
CUGCUUUGCAGA	chr1:33237159-33237407(+)$1	248	88	100	6.5954
CCAGGAGACUGG	chr9:130269177-130269414(-)$1	237	197	209	9.3972
GGCUGCCGAGCC	chr16:2550236-2550531(+)$1	295	106	118	9.3972
auauauauauau	chr19:6413633-6413849(-)$1	216	58	70	7.1260
GUGCCCGUGUGC	chr16:1496204-1496491(-)$1	287	203	215	9.3972
uacagacaugug	chr4:2939873-2940167(-)$1	294	41	53	9.3972
ucaggaggcuga	chr1:16555447-16555676(-)$1	229	42	54	7.1260
CUGCGUCUGCGG	chr12:120534542-120534845(-)$1	303	235	247	7.1260
GCGGUCUCCCGC	chr19:47778235-47778490(+)$1	255	114	126	9.3972
CCAGCCCCGCUG	chr17:79826162-79826493(-)$1	331	187	199	6.6017
GGCCUCUCGGCC	chr9:136208440-136208722(-)$1	282	257	269	9.3972
CUGGCACAGCCA	chrX:53263356-53263619(-)$1	263	151	163	6.6017
UGCUGAUGAGCA	chr19:1585019-1585292(-)$1	273	174	186	9.3972
CGGGGGCACCCG	chr1:15736387-15736695(+)$1	308	192	204	9.3972
GCCGAGAACGGC	chrX:152953802-152954150(+)$1	348	242	254	9.3972
UAUUUAAAGAAU	chr12:120534784-120535015(-)$1	231	62	74	6.6017
CCCAGCCAUGGG	chr17:74078562-74078802(-)$1	240	12	24	9.3972

#DB
((((....))))	chr19:1460940-1461181(-)$1	1	174	186	9.3972
((((....))))	chr1:11849279-11849525(-)$1	1	124	136	7.1260
((((....))))	chr9:136208243-136208520(-)$1	1	55	67	9.3972
((((....))))	chr12:120534715-120534967(-)$1	1	182	194	7.1260
((((....))))	chr19:47778360-47778637(+)$1	1	0	12	9.3972
((((....))))	chr17:47126691-47126970(+)$1	1	165	177	7.1260
((((....))))	chr19:51301519-51301788(-)$1	1	126	138	9.3972
((((....))))	chr19:47778290-47778560(+)$1	1	201	213	9.3972
((((....))))	chr11:770243-770510(-)$1	1	165	177	9.3972
))))....))))	chr17:79826314-79826562(-)$1	1	130	142	6.6983
((((....))))	chr17:79890698-79890962(-)$1	1	19	31	9.3972
((((....))))	chr17:76117555-76117812(-)$1	1	66	78	9.3972
((((....))))	chr16:31501591-31501871(-)$1	1	115	127	7.1260
))))....))))	chr19:1582518-1582758(-)$1	1	159	171	6.6983
((((....))))	chr19:55998518-55998769(+)$1	1	53	65	9.3972
((((....))))	chr19:8468333-8468646(+)$1	1	128	140	7.1260
((((...)))).	chr1:33237159-33237407(+)$1	1	88	100	6.5954
((((....))))	chr9:130269177-130269414(-)$1	1	197	209	9.3972
((((....))))	chr16:2550236-2550531(+)$1	1	106	118	9.3972
((((....))))	chr19:6413633-6413849(-)$1	1	58	70	7.1260
((((....))))	chr16:1496204-1496491(-)$1	1	203	215	9.3972
((((....))))	chr4:2939873-2940167(-)$1	1	41	53	9.3972
((((....))))	chr1:16555447-16555676(-)$1	1	42	54	7.1260
((((....))))	chr12:120534542-120534845(-)$1	1	235	247	7.1260
((((....))))	chr19:47778235-47778490(+)$1	1	114	126	9.3972
.((((...))))	chr17:79826162-79826493(-)$1	1	187	199	6.6017
((((....))))	chr9:136208440-136208722(-)$1	1	257	269	9.3972
.((((...))))	chrX:53263356-53263619(-)$1	1	151	163	6.6017
((((....))))	chr19:1585019-1585292(-)$1	1	174	186	9.3972
((((....))))	chr1:15736387-15736695(+)$1	1	192	204	9.3972
((((....))))	chrX:152953802-152954150(+)$1	1	242	254	9.3972
.((((...))))	chr12:120534784-120535015(-)$1	1	62	74	6.6017
((((....))))	chr17:74078562-74078802(-)$1	1	12	24	9.3972

#PSSM
d : 0.66	e : 0.24	$ : 0.09	
d : 0.75	e : 0.24	
d : 0.75	e : 0.24	
d : 0.75	e : 0.24	
m : 0.81	d : 0.09	4 : 0.06	l : 0.03	
m : 0.81	l : 0.12	4 : 0.06	
m : 0.81	l : 0.12	4 : 0.06	
m : 0.81	l : 0.09	4 : 0.06	d : 0.03	
d : 0.75	e : 0.24	
d : 0.75	e : 0.24	
d : 0.75	e : 0.24	
d : 0.72	e : 0.24	4 : 0.03	

#score	275.3545364320392
#seq	33
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_transcript_m3_run1.txt

#BEAR
gggg"""gggggggoooooogggggggggggggg	chrX:118780877-118781126(-)$1	249	128	162	16.1699
heeeee[gggggggooooooggggggg333eeee	chr2:178077720-178077968(+)$1	248	137	171	15.8563
nndddd:eeeee[aooooooa]eeeeeggggggg	chrX:48456010-48456284(+)$1	274	82	116	11.5716
:dddd"""dddd[aooooooa]dddd333dddd:	chr16:89973706-89973946(+)$1	240	116	150	12.8844
bb$$$$$gggggggooooooggggggg22bb]a2	chr19:41110187-41110450(+)$1	263	158	192	14.0725
fff[ffffff[cccoooooocccffffff]ffff	chr16:89653680-89653943(+)$1	263	133	167	13.9711
33gggggggeeeeeooooooeeeee:::======	chr19:41305300-41305559(+)$1	259	169	203	11.3630
ccc[ccc!!eeeeeooooooeeeee22ccc22cc	chr3:38496988-38497236(+)$1	248	74	108	14.2531
ccc[ddddbb[cccooooooccc]bb]ddddccc	chr11:568105-568338(-)$1	233	106	140	13.9202
ccc!!ccc!!eeeeeooooooeeeee]ccc22cc	chr12:132632601-132632856(+)$1	255	220	254	13.0429
ddd[ffffff[cccooooooccc]ffffff]ddd	chr17:20770760-20771010(-)$1	250	146	180	14.1196
!!ccc"""fffffflllffffff333ccceeeee	chr8:135817022-135817229(-)$1	207	132	166	10.1539
ee[ccc!!ffffffooooooffffff4444ccce	chrX:141292819-141293130(-)$1	311	220	254	15.8299
bb####bb[eeeeeooooooeeeee22bb4444b	chr19:3458579-3458814(+)$1	235	37	71	12.8732
ccc!!dddd[ddddoooooodddd]dddd22ccc	chr12:131522296-131522568(+)$1	272	236	270	13.0800
dddd"""gggggggooooooggggggg4444ddd	chr16:1510580-1510844(-)$1	264	65	99	16.2311
fffff[bb!!bbbboooooobb]bb]bb]fffff	chr13:92002503-92002721(+)$1	218	10	44	11.8644
gggg[eeeee!!bboooooobbeeeee]gggggg	chr17:17585396-17585686(+)$1	290	24	58	14.1546
accc####ffffffooooooffffff4444ccc]	chr1:1257244-1257474(-)$1	230	17	51	16.4338
[bb[============mmmm============]b	chr17:79963994-79964251(+)$1	257	60	94	10.3338
[aeeeee[ffffffooooooffffff4444eeee	chr3:48664394-48664754(-)$1	360	214	248	15.1807
ggggggg[bb[a[aooooooa]abb]ggggggg:	chr11:71170287-71170671(+)$1	384	61	95	13.4421
ddd:dddd[eeeeeooooooeeeee]ddddbb[d	chr12:132388064-132388304(+)$1	240	112	146	11.4217
ddddcccgggggggooooooggggggg333ccc]	chr19:34288077-34288341(+)$1	264	222	256	15.8941
eeeee"""ccc[bboooooobb]ccc333eeeee	chr17:76124229-76124495(-)$1	266	38	72	15.9170
$bb[bb[gggggggooooooggggggg]bbbbdd	chr14:105628435-105628730(-)$1	295	182	216	13.4565
a[bb!!dddd[cccoooooocccdddd22bb]a]	chr17:79654353-79654616(+)$1	263	89	123	13.6626
hhhhh!!ccc[cccooooooccc]ccc22hhhhh	chr16:89556242-89556492(-)$1	250	140	174	14.4129
ccc####ffffff[aooooooa]ffffff4444c	chr15:70375673-70375949(-)$1	276	213	247	14.3955
ddd"""a[ffffffooooooffffff]adddd22	chr8:96146498-96146781(+)$1	283	149	183	15.0798
hhhhhhhh[bbcccooooooccc22bb]hhhhhh	chr8:102217326-102217680(-)$1	354	3	37	11.6122
[bb[ccccccddddoooooodddd]ccc]cccbb	chr1:213032259-213032518(+)$1	259	71	105	13.3188
[ddddbb[bb[cccoooooocccbbbb]dddd]a	chr22:20748560-20748844(+)$1	284	195	229	13.2493
eeee####ffffffooooooffffff4444eeee	chr1:179010769-179011097(+)$1	328	123	157	16.1610
eeee!!a!!bb[bboooooobbbb22a]eeeeef	chr10:98346428-98346868(-)$1	440	356	390	13.9216
gccc!!hhhhhhhhoooooohhhhhhhh]ccc22	chr3:47459912-47460167(-)$1	255	108	142	12.8498
eeeee!!ffffffrrrrrrrrrffffff]eeeee	chr1:246591817-246592228(-)$1	411	290	324	10.2336
ffff:dddd[ddddoooooodddd]ddddggggg	chr7:156684789-156685024(-)$1	235	54	88	11.3905
ff!!ffffff"""aooooooa22ffffff333ff	chr4:715181-715414(+)$1	233	46	80	13.6252
eeeee[hhhhhhhhoooooohhhhhhhh]eeeee	chr19:2757779-2758041(-)$1	262	204	238	12.4375
eeccc"""ccc[bboooooobb]ccc]ccc]eee	chr14:65253102-65253374(-)$1	272	233	267	15.5513
d!!dddd[a[ddddoooooodddd]a22dddd22	chr11:65343650-65343900(+)$1	250	197	231	12.9122
ccc[eeeee"""bboooooobb333eeeeecccc	chr10:106014819-106015081(+)$1	262	143	177	13.6181
d[bb####ccc[arrrrrrrrra]ccc333bb]d	chr5:180651138-180651428(+)$1	290	232	266	10.6273
e[ccc"""bb!!bboooooobb22bbccc]eeee	chr19:4066194-4066441(-)$1	247	188	222	14.4638

#otherMatches

#Seq PSSM
ACAGCUAGUGUGCCUGAAUUGGCAUGCCUGUGAG	chrX:118780877-118781126(-)$1	249	128	162	16.1699
GGCUGCGCGGCCUCCGAAGCGAGGCCGAGGGCGG	chr2:178077720-178077968(+)$1	248	137	171	15.8563
AAUGCUAGGCGGGGGAGGGGCGUUGCUAUGGCGA	chrX:48456010-48456284(+)$1	274	82	116	11.5716
CAGCUCCCAGCUCCCACCUAGCAGCUCCCGGCUC	chr16:89973706-89973946(+)$1	240	116	150	12.8844
GCAAAGGGUUCCGUCGGACUACGGAAUGGGCGGG	chr19:41110187-41110450(+)$1	263	158	192	14.0725
CCGUGAGCCGAUGUCUCCAUGCGCGGCUCCUGGG	chr16:89653680-89653943(+)$1	263	133	167	13.9711
UCAGGGCCUGCCCCGGGUUGGGGGCGUUGGGGUG	chr19:41305300-41305559(+)$1	259	169	203	11.3630
UGCGUCGUCGUGAGGCUUAGUUUACACCGAAAGC	chr3:38496988-38497236(+)$1	248	74	108	14.2531
GGGACGGGGGUGGGGUCAAUCCCUCCGCCCGCCC	chr11:568105-568338(-)$1	233	106	140	13.9202
GUGAACUCGGGACCCUCCCUUGGGUCAGAGGCCA	chr12:132632601-132632856(+)$1	255	220	254	13.0429
gugcugcacugucugugacuggggggugcaccau	chr17:20770760-20771010(-)$1	250	146	180	14.1196
UUGAUAUAAUUCUGUCCCGGAGUGGAGUUGAGGA	chr8:135817022-135817229(-)$1	207	132	166	10.1539
GUACUGCGCUGCCGUGAGACUGGUAGGUCCCAGA	chrX:141292819-141293130(-)$1	311	220	254	15.8299
GCAGAAUGGGGUGUGGGGGGGCACUGGCAAGGGG	chr19:3458579-3458814(+)$1	235	37	71	12.8732
cucacugcacuggggucucacucacugcauggag	chr12:131522296-131522568(+)$1	272	236	270	13.0800
GGGCGUGGCCUGGGCCGAGUCCCGGGCAGAAGUC	chr16:1510580-1510844(-)$1	264	65	99	16.2311
AAAAUUAGUUCUCAUUUAUUUGCAGUCUCAUUUU	chr13:92002503-92002721(+)$1	218	10	44	11.8644
AGGGAUCUGCUUGCGCCGAGGCGCGGAGUCUUUG	chr17:17585396-17585686(+)$1	290	24	58	14.1546
ggagacagcugagacccugcucucagagagcuca	chr1:1257244-1257474(-)$1	230	17	51	16.4338
ggugugugugugugcguccuugcaugugcacagg	chr17:79963994-79964251(+)$1	257	60	94	10.3338
UCCUGCCUUCACUCUCUCAUGGGUGGCCCUGGCA	chr3:48664394-48664754(-)$1	360	214	248	15.1807
GCUGUGCUGGCGUCUGUGCUGUCCCUGCAUAGCC	chr11:71170287-71170671(+)$1	384	61	95	13.4421
CUGUGGUGAGGUGGAUGCCCCCACCCUACCCUGC	chr12:132388064-132388304(+)$1	240	112	146	11.4217
UGGGGCUUCGGGAUGCACAAGUCCCGGCUUGGCG	chr19:34288077-34288341(+)$1	264	222	256	15.8941
UCCCCCAGCCGAGCGCCAGGGCACGGGGAGGGGA	chr17:76124229-76124495(-)$1	266	38	72	15.9170
GAGACUGGGCAGGGGCAUAGCCCUGCUAGGCUGG	chr14:105628435-105628730(-)$1	295	182	216	13.4565
AGUAGAUGCCACUGGGUGGGCAGGGCAGGUGGUG	chr17:79654353-79654616(+)$1	263	89	123	13.6626
AGCUUGGGUCGGCCGUAAggggcggacgggggcu	chr16:89556242-89556492(-)$1	250	140	174	14.4129
UGGGAGGCAAGCAGAGUUUAGUGUGUUUGGGAAC	chr15:70375673-70375949(-)$1	276	213	247	14.3955
GACGGGGGUCCUGGACACGGCCGGGGGCGUCUCA	chr8:96146498-96146781(+)$1	283	149	183	15.0798
ACUGUCCCGGCCCGGGUGAGCGGCAGCGGGGGCG	chr8:102217326-102217680(-)$1	354	3	37	11.6122
GGGCUCCGGCCUCAACUGCCUGGGUGCCUGGAUC	chr1:213032259-213032518(+)$1	259	71	105	13.3188
GGCUCCGUGCGUGUGAUCGUGCAGCUGUGAGCGC	chr22:20748560-20748844(+)$1	284	195	229	13.2493
gagaggggagagggaaaggACCCUCUGGCAUUUU	chr1:179010769-179011097(+)$1	328	123	157	16.1610
GGCGGACGAGCACGAACACACGGUGAggcgcccc	chr10:98346428-98346868(-)$1	440	356	390	13.9216
ggaCAGGCUGUGAGGUGUGUCUCACAGCAGUCCG	chr3:47459912-47460167(-)$1	255	108	142	12.8498
ccagcucugcuacucacuaacuguggcaugcugg	chr1:246591817-246592228(-)$1	411	290	324	10.2336
GUUGAGUUCGAAACCUUACCGUUUGGGAUGAGAA	chr7:156684789-156685024(-)$1	235	54	88	11.3905
GCAGUCAGCCAGACGGGAAAGGGGGCUGAGGCGU	chr4:715181-715414(+)$1	233	46	80	13.6252
GCAGUGGGGGUGGCGGUCAGGCUGUCCCGGCUGC	chr19:2757779-2758041(-)$1	262	204	238	12.4375
AAGCCAUCCUCAGCAACCAGGUAGAGAGGCAUUC	chr14:65253102-65253374(-)$1	272	233	267	15.5513
CGAGCUAGUGUUGGAGUGCACCAAGAAAUGGUGA	chr11:65343650-65343900(+)$1	250	197	231	12.9122
UCUACAGCAUGAGGUUCUGCCCGUUUGCUGAGAG	chr10:106014819-106015081(+)$1	262	143	177	13.6181
GGAGGAGGAGGACGAGGAGGAAGACCUGGACUAC	chr5:180651138-180651428(+)$1	290	232	266	10.6273
UGCUGCGUGCAUACGUUGGAGUUGGCCAGGAUUG	chr19:4066194-4066441(-)$1	247	188	222	14.4638

#DB
((((...(((((((......))))))))))))))	chrX:118780877-118781126(-)$1	1	128	162	16.1699
((((((.(((((((......)))))))...))))	chr2:178077720-178077968(+)$1	1	137	171	15.8563
..)))).(((((.(......).)))))(((((((	chrX:48456010-48456284(+)$1	1	82	116	11.5716
.((((...((((.(......).))))...)))).	chr16:89973706-89973946(+)$1	1	116	150	12.8844
((.....(((((((......)))))))..)).).	chr19:41110187-41110450(+)$1	1	158	192	14.0725
(((.((((((.(((......))))))))).))))	chr16:89653680-89653943(+)$1	1	133	167	13.9711
..)))))))(((((......)))))...((((((	chr19:41305300-41305559(+)$1	1	169	203	11.3630
(((.(((..(((((......)))))..)))..))	chr3:38496988-38497236(+)$1	1	74	108	14.2531
(((.((((((.(((......))).)).)))))))	chr11:568105-568338(-)$1	1	106	140	13.9202
(((..(((..(((((......))))).)))..))	chr12:132632601-132632856(+)$1	1	220	254	13.0429
(((.((((((.(((......))).)))))).)))	chr17:20770760-20771010(-)$1	1	146	180	14.1196
..(((...((((((...))))))...))))))))	chr8:135817022-135817229(-)$1	1	132	166	10.1539
((.(((..((((((......))))))....))))	chrX:141292819-141293130(-)$1	1	220	254	15.8299
((....((.(((((......)))))..))....)	chr19:3458579-3458814(+)$1	1	37	71	12.8732
(((..((((.((((......)))).))))..)))	chr12:131522296-131522568(+)$1	1	236	270	13.0800
((((...(((((((......)))))))....)))	chr16:1510580-1510844(-)$1	1	65	99	16.2311
(((((.((..((((......)).)).)).)))))	chr13:92002503-92002721(+)$1	1	10	44	11.8644
((((.(((((..((......))))))).))))))	chr17:17585396-17585686(+)$1	1	24	58	14.1546
((((....((((((......))))))....))).	chr1:1257244-1257474(-)$1	1	17	51	16.4338
.((.((((((((((((....)))))))))))).)	chr17:79963994-79964251(+)$1	1	60	94	10.3338
.((((((.((((((......))))))....))))	chr3:48664394-48664754(-)$1	1	214	248	15.1807
(((((((.((.(.(......).))).))))))).	chr11:71170287-71170671(+)$1	1	61	95	13.4421
))).((((.(((((......))))).))))((.(	chr12:132388064-132388304(+)$1	1	112	146	11.4217
((((((((((((((......)))))))...))).	chr19:34288077-34288341(+)$1	1	222	256	15.8941
(((((...(((.((......)).)))...)))))	chr17:76124229-76124495(-)$1	1	38	72	15.9170
.((.((.(((((((......))))))).))))))	chr14:105628435-105628730(-)$1	1	182	216	13.4565
(.((..((((.(((......)))))))..)).).	chr17:79654353-79654616(+)$1	1	89	123	13.6626
(((((..(((.(((......))).)))..)))))	chr16:89556242-89556492(-)$1	1	140	174	14.4129
(((....((((((.(......).))))))....)	chr15:70375673-70375949(-)$1	1	213	247	14.3955
(((...(.((((((......)))))).)))))..	chr8:96146498-96146781(+)$1	1	149	183	15.0798
((((((((.(((((......)))..)).))))))	chr8:102217326-102217680(-)$1	1	3	37	11.6122
.((.((((((((((......)))).))).)))))	chr1:213032259-213032518(+)$1	1	71	105	13.3188
.((((((.((.(((......))))))).)))).)	chr22:20748560-20748844(+)$1	1	195	229	13.2493
((((....((((((......))))))....))))	chr1:179010769-179011097(+)$1	1	123	157	16.1610
((((..(..((.((......))))..).)))))(	chr10:98346428-98346868(-)$1	1	356	390	13.9216
((((..((((((((......)))))))).)))..	chr3:47459912-47460167(-)$1	1	108	142	12.8498
(((((..((((((.........)))))).)))))	chr1:246591817-246592228(-)$1	1	290	324	10.2336
)))).((((.((((......)))).))))(((((	chr7:156684789-156685024(-)$1	1	54	88	11.3905
((..((((((...(......)..))))))...))	chr4:715181-715414(+)$1	1	46	80	13.6252
(((((.((((((((......)))))))).)))))	chr19:2757779-2758041(-)$1	1	204	238	12.4375
(((((...(((.((......)).))).))).)))	chr14:65253102-65253374(-)$1	1	233	267	15.5513
(..((((.(.((((......)))).)..))))..	chr11:65343650-65343900(+)$1	1	197	231	12.9122
(((.(((((...((......))...))))))))(	chr10:106014819-106015081(+)$1	1	143	177	13.6181
(.((....(((.(.........).)))...)).)	chr5:180651138-180651428(+)$1	1	232	266	10.6273
(.(((...((..((......))..))))).))))	chr19:4066194-4066441(-)$1	1	188	222	14.4638

#PSSM
e : 0.17	d : 0.15	c : 0.13	g : 0.08	f : 0.08	[ : 0.08	h : 0.06	b : 0.04	a : 0.04	n : 0.02	: : 0.02	3 : 0.02	! : 0.02	$ : 0.02	
e : 0.17	c : 0.17	d : 0.15	b : 0.11	f : 0.08	g : 0.06	[ : 0.06	! : 0.04	h : 0.04	n : 0.02	3 : 0.02	a : 0.02	
c : 0.24	d : 0.17	e : 0.15	b : 0.11	g : 0.08	f : 0.06	h : 0.04	! : 0.04	$ : 0.02	[ : 0.02	# : 0.02	
[ : 0.17	e : 0.15	d : 0.13	c : 0.13	g : 0.08	! : 0.06	# : 0.04	f : 0.04	b : 0.04	h : 0.04	$ : 0.02	: : 0.02	" : 0.02	
c : 0.15	e : 0.13	d : 0.13	! : 0.11	# : 0.11	f : 0.08	" : 0.06	g : 0.04	h : 0.04	$ : 0.02	[ : 0.02	= : 0.02	b : 0.02	: : 0.02	
" : 0.17	d : 0.13	c : 0.11	# : 0.11	! : 0.11	e : 0.08	f : 0.06	g : 0.04	[ : 0.04	b : 0.04	$ : 0.02	= : 0.02	h : 0.02	
" : 0.15	d : 0.13	c : 0.08	# : 0.08	f : 0.06	! : 0.06	b : 0.06	e : 0.06	h : 0.06	[ : 0.04	g : 0.04	a : 0.04	: : 0.02	$ : 0.02	= : 0.02	
g : 0.15	" : 0.11	f : 0.11	d : 0.11	[ : 0.11	e : 0.06	! : 0.06	c : 0.06	# : 0.06	h : 0.06	b : 0.04	= : 0.02	
f : 0.24	g : 0.15	c : 0.11	d : 0.08	! : 0.08	b : 0.08	e : 0.06	[ : 0.06	h : 0.04	= : 0.02	a : 0.02	
f : 0.24	g : 0.13	e : 0.13	b : 0.13	c : 0.11	[ : 0.06	d : 0.04	! : 0.04	h : 0.04	= : 0.02	" : 0.02	
f : 0.17	[ : 0.15	g : 0.13	e : 0.13	d : 0.11	b : 0.06	c : 0.06	! : 0.04	h : 0.04	" : 0.04	= : 0.02	
f : 0.17	c : 0.15	g : 0.13	e : 0.13	d : 0.11	[ : 0.08	! : 0.04	h : 0.04	" : 0.04	b : 0.02	= : 0.02	a : 0.02	
f : 0.17	c : 0.15	b : 0.15	g : 0.13	e : 0.11	d : 0.08	[ : 0.06	h : 0.04	= : 0.02	" : 0.02	a : 0.02	
c : 0.15	b : 0.15	g : 0.13	f : 0.13	e : 0.11	a : 0.08	d : 0.08	h : 0.04	r : 0.04	= : 0.02	[ : 0.02	
o : 0.86	r : 0.04	e : 0.02	l : 0.02	= : 0.02	a : 0.02	
o : 0.91	r : 0.04	l : 0.02	= : 0.02	
o : 0.91	r : 0.04	l : 0.02	m : 0.02	
o : 0.91	r : 0.04	f : 0.02	m : 0.02	
o : 0.91	r : 0.04	f : 0.02	m : 0.02	
o : 0.91	r : 0.04	f : 0.02	m : 0.02	
c : 0.15	b : 0.15	g : 0.13	f : 0.13	a : 0.08	e : 0.08	d : 0.08	o : 0.04	h : 0.04	r : 0.04	= : 0.02	
c : 0.15	b : 0.15	g : 0.13	f : 0.13	e : 0.11	d : 0.08	] : 0.06	h : 0.04	r : 0.04	= : 0.02	a : 0.02	2 : 0.02	
e : 0.15	c : 0.15	f : 0.15	g : 0.13	d : 0.11	] : 0.08	a : 0.04	h : 0.04	2 : 0.04	= : 0.02	b : 0.02	3 : 0.02	
f : 0.20	e : 0.15	g : 0.13	d : 0.13	] : 0.08	b : 0.08	3 : 0.04	c : 0.04	2 : 0.04	h : 0.04	= : 0.02	
f : 0.22	e : 0.15	g : 0.13	b : 0.11	] : 0.08	c : 0.08	d : 0.04	3 : 0.04	2 : 0.04	h : 0.04	= : 0.02	
f : 0.22	g : 0.13	c : 0.11	e : 0.08	d : 0.08	b : 0.08	2 : 0.06	] : 0.06	h : 0.04	: : 0.02	3 : 0.02	= : 0.02	a : 0.02	
g : 0.15	f : 0.11	c : 0.11	] : 0.08	4 : 0.08	d : 0.08	e : 0.06	2 : 0.06	b : 0.06	3 : 0.04	h : 0.04	: : 0.02	= : 0.02	a : 0.02	
c : 0.13	3 : 0.11	f : 0.11	4 : 0.11	] : 0.11	2 : 0.08	d : 0.08	g : 0.06	b : 0.04	h : 0.04	: : 0.02	= : 0.02	a : 0.02	e : 0.02	
d : 0.15	3 : 0.11	c : 0.11	4 : 0.11	] : 0.11	g : 0.08	f : 0.08	2 : 0.06	= : 0.04	b : 0.04	e : 0.04	h : 0.02	
4 : 0.15	d : 0.13	e : 0.13	g : 0.11	c : 0.11	3 : 0.08	b : 0.06	] : 0.04	= : 0.04	f : 0.04	h : 0.04	2 : 0.02	
e : 0.20	c : 0.13	g : 0.11	d : 0.11	b : 0.11	2 : 0.06	4 : 0.06	f : 0.04	= : 0.04	] : 0.04	h : 0.04	3 : 0.02	
e : 0.22	c : 0.17	d : 0.13	g : 0.11	b : 0.06	] : 0.04	f : 0.04	= : 0.04	2 : 0.04	4 : 0.04	h : 0.04	3 : 0.02	
e : 0.22	c : 0.17	g : 0.11	d : 0.08	f : 0.06	] : 0.06	2 : 0.06	a : 0.04	4 : 0.04	h : 0.04	= : 0.02	[ : 0.02	b : 0.02	
e : 0.22	c : 0.13	d : 0.11	g : 0.08	2 : 0.08	f : 0.08	b : 0.06	] : 0.06	: : 0.04	h : 0.04	= : 0.02	a : 0.02	

#score	611.0164589351508
#seq	45
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_transcript_m2_run2.txt

#BEAR
=========iiiiiiiii333eeeee]ccc]=========	chr21:44269047-44269274(-)$1	227	141	181	13.2848
[ffffff"""eeeee[eeeeeooooooeeeee]eeeee44	chr5:176516875-176517128(+)$1	253	172	212	13.5055
b!!dddd[dddd"""bb[cccooooooccc]bb22dddd]	chr20:43033564-43033817(+)$1	253	98	138	13.6111
2dddd]ddddggggggg[ddddoooooodddd]ggggggg	chr6:349144-349423(+)$1	279	48	88	12.1152
gggg!!dddd[dddd[eeeeeooooooeeeeedddd]ddd	chrX:70766553-70766769(+)$1	216	70	110	13.8259
iiiiiiii!!bb!!cccssssssssssccc22bb]iiiii	chr17:79964082-79964335(+)$1	253	209	249	14.9275
d[ffffff[ggggggg!!cccooooooccc22ggggggg]	chr1:987788-988036(+)$1	248	12	52	16.0114
gggg[==========[a[cccooooooccc]a]=======	chr17:79048140-79048543(+)$1	403	313	353	20.0699
==========####a[eeeeerrrrrrrrreeeeea====	chr4:1805370-1805601(+)$1	231	14	54	15.6774
iiiiii[bbeeeee!!ccc!!ccclllccc]ccceeeee>	chr12:100937241-100937512(+)$1	271	136	176	11.7467
[ccc[ccc[eeeeexxxxxxxxxxxxxxxeeeee]ccc]c	chr17:7079061-7079298(-)$1	237	53	93	11.9875
[ddddccc[dddd####ddddoooooodddd4444ddddc	chr3:172020544-172020853(+)$1	309	21	61	12.8950
iii!!===========wwwwwwwwwwwwww==========	chr11:497512-497783(-)$1	271	52	92	16.8407
iiiiiiiii[cccgggggggrrrrrrrrrggggggg]ccc	chr3:48467241-48467539(-)$1	298	196	236	14.8306
fffggggggg"""bb[cccqqqqqqqqccc]bb333gggg	chr20:43030786-43031111(+)$1	325	94	134	13.0964
===========[ccc[ffffffooooooffffff]ccc]=	chr9:136719084-136719331(-)$1	247	158	198	15.8303
==[bb[dddd[bbbb[ccc[aooooooa]ccc]bb22bb]	chr5:882836-883096(-)$1	260	166	206	13.1679
ccc!!a[ccc!!ccc####cccmmmmccc4444cccccc]	chr16:8943705-8943963(+)$1	258	132	172	12.7789
d[bb[dddd!!dddd[eeeeeooooooeeeee]ddddddd	chr1:17965652-17965932(+)$1	280	195	235	13.0335
!!a[ccc!!a!!dddd!!cccoooooocccdddd22a22c	chr2:233740584-233740872(+)$1	288	201	241	14.7261
]ffffff============[aooooooa]===========	chr20:62363597-62363899(+)$1	302	256	296	17.2859
cc[=============uuuuuuuuuuuu============	chr1:109642821-109643031(+)$1	210	97	137	15.0130
a[bb!!==========!!bbqqqqqqqqbb22========	chr19:47732541-47732790(-)$1	249	155	195	14.4383
ggg:==========####cccpppppppccc333======	chr14:70235844-70236083(+)$1	239	195	235	14.0958
:ggggggg####ccc[cccqqqqqqqqccc]ccc4444gg	chr13:114175479-114175767(+)$1	288	39	79	12.8699
iiiiiiii!!bb!!cccssssssssssccc22bb]iiiii	chr17:79964163-79964390(+)$1	227	128	168	14.9275
i]cccggggggg!!a[eeeeeooooooeeeee]agggggg	chr1:146684699-146684996(-)$1	297	252	292	15.6265
ccc!!eeeee[==========annnnna]==========]	chr4:2070181-2070553(+)$1	372	177	217	14.0893
[a[iiiiiiiii!!a[ffffffmmmmffffff]a]iiiii	chr7:158133865-158134119(-)$1	254	164	204	13.0133
!bb!!bb!!==========ssssssssss==========]	chr7:158349479-158349827(-)$1	348	78	118	15.1296
===========[bb[ccc!!cccmmmmccc]ccc]bb===	chr7:158126018-158126263(-)$1	245	173	213	13.7898
ddddddd!!bb[cccffffffooooooffffff333ccc]	chr11:124492743-124493223(+)$1	480	198	238	13.0111
ggggggg[ggggggg[eeeeemmmmeeeeeggggggg]gg	chr12:133112989-133113277(+)$1	288	206	246	11.9135
iiiiiiii!!bb!!cccssssssssssccc22bb]iiiii	chr17:79964135-79964363(+)$1	228	156	196	14.9275
ee[ccciiiiiiiii!!bbrrrrrrrrrbb]iiiiiiiii	chr7:66165663-66165945(+)$1	282	189	229	15.2854
g[hhhhhhhh!!bb####cccooooooccc4444bb333h	chr7:158125060-158125294(-)$1	234	50	90	14.8599
$ggggggg"""eeeeerrrrrrrrreeeee333ggggggg	chr9:95013706-95013955(-)$1	249	134	174	12.4345
fffff####bbddddbb[cccooooooccc22bb22dddd	chr17:7077792-7078045(-)$1	253	159	199	13.0241
==22dddd::ggggggg[cccoooooocccgggggggeee	chr20:3194531-3194794(+)$1	263	107	147	12.4984
bbb[bbdddd[ccc[ccccccooooooccc]ccc]cccdd	chr16:1785706-1785974(+)$1	268	48	88	14.5220
hhhhhhh[==============lll==============]	chr17:79964070-79964282(+)$1	212	39	79	14.5243
ff[a"""bb!!eeeee!!cccooooooccc22eeeee22b	chr19:944238-944535(+)$1	297	197	237	14.2644
=======dddd[ccc[a[ccc[bbmmmmbb]ccc]a]ccc	chr2:240212161-240212485(-)$1	324	180	220	11.8118
ggg####==============qqqqqqqq===========	chr9:136780914-136781196(-)$1	282	228	268	15.0687
ee[a[a[dddd[eeeee[cccooooooccc]eeeeedddd	chr3:37904158-37904432(+)$1	274	87	127	14.5385
==========[ccc[eeeeerrrrrrrrreeeee]ccc==	chr21:44269123-44269354(-)$1	231	116	156	15.5657
gggg!!dddd[dddd[eeeeeooooooeeeeedddd]ddd	chrX:70766511-70766753(+)$1	242	112	152	13.8259

#otherMatches

#Seq PSSM
CGCGGUGUGAUCGUGCGCUGUGUGUGAGGUGCACGCUGCG	chr21:44269047-44269274(-)$1	227	141	181	13.2848
GAUAUGCCCCGGUGCAGCAUGACCCUGUAUGUGGCACCAA	chr5:176516875-176517128(+)$1	253	172	212	13.5055
cuguguggugcgugugugugcuuguguguggacugugugg	chr20:43033564-43033817(+)$1	253	98	138	13.6111
UGCUCugugcacgugcgugugugugagugcacuugugugu	chr6:349144-349423(+)$1	279	48	88	12.1152
GCGCUGUGACCCUGCAGUAGCGCAAAGGCUGCGCAGCGUU	chrX:70766553-70766769(+)$1	216	70	110	13.8259
GUGAAUGCAGCCGAAUGAUCACAUCUGCAUGAGGGGUGUU	chr17:79964082-79964335(+)$1	253	209	249	14.9275
gacauguagauaugcgugugugacuaugcggccgugugug	chr1:987788-988036(+)$1	248	12	52	16.0114
gugucugcgugcacggaugcguaugagugccugugugugu	chr17:79048140-79048543(+)$1	403	313	353	20.0699
GGCGCUCGCCUAUCGCUCUGCUCUCUCUUUGUAGACGGCG	chr4:1805370-1805601(+)$1	231	14	54	15.6774
GGAAAAUGUUGAAUCAGGUAACCUCCAAGGCACCAUUCAG	chr12:100937241-100937512(+)$1	271	136	176	11.7467
GAGGGAUUGUGUCUGUGAGUGUGAGAAUGAGAUGGAGugu	chr17:7079061-7079298(-)$1	237	53	93	11.9875
CAGUGCUUCUGUAAAGGGCAUUGUGUUAUGUAUUGUAUAA	chr3:172020544-172020853(+)$1	309	21	61	12.8950
ugugAGCACAUGGGCAAGAAUGAGCACGAguguccgugug	chr11:497512-497783(-)$1	271	52	92	16.8407
auauggaugugucuucaugugguguuugaacauggguggc	chr3:48467241-48467539(-)$1	298	196	236	14.8306
aguguguauguguguguacuugugucuguggauguuugua	chr20:43030786-43031111(+)$1	325	94	134	13.0964
guguaugugcagaugggugugugugugugCACacgugugu	chr9:136719084-136719331(-)$1	247	158	198	15.8303
CUGGCUUAUGUGUUGGGAAGUUGCUGUGGUUUGCGUGGCU	chr5:882836-883096(-)$1	260	166	206	13.1679
CUGCAcauggcagguaagagcacagcugccaagaccccaa	chr16:8943705-8943963(+)$1	258	132	172	12.7789
CAAUGCCCAGGUUUUGGCCUCCAGGGUGGGGUGAAGGUGG	chr1:17965652-17965932(+)$1	280	195	235	13.0335
AGGACCCGAGGACAGCACCGCgcaggagcggcuggaccag	chr2:233740584-233740872(+)$1	288	201	241	14.7261
ggcacgugugcgcgcgugugggugagauggcgugugcgua	chr20:62363597-62363899(+)$1	302	256	296	17.2859
UGAGUGUGCGCGCUUGGAGCGUGUUAGGCGAGUGCGUGCG	chr1:109642821-109643031(+)$1	210	97	137	15.0130
UGCCUGAUCUACGUGUGUCCUGAGAGUUGGUGACAUGUGG	chr19:47732541-47732790(-)$1	249	155	195	14.4383
AUUGUUUUAUUAAAAGUAGUUUUAAAUUAAUGGAUUUAAU	chr14:70235844-70236083(+)$1	239	195	235	14.0958
gGCGCACCUGUGGUGGGGGGGCAugugucugcaugugugg	chr13:114175479-114175767(+)$1	288	39	79	12.8699
GUGAAUGCAGCCGAAUGAUCACAUCUGCAUGAGGGGUGUU	chr17:79964163-79964390(+)$1	227	128	168	14.9275
CCCAGAAGGAUGUUGGGGUAACUUGUAUUACUGCCAUUUU	chr1:146684699-146684996(-)$1	297	252	292	15.6265
agcaugcaugcgugcgagugccuguguguguacuugcaua	chr4:2070181-2070553(+)$1	372	177	217	14.0893
AUGACGUCUGCAGGUGUCACCAAUUAUGGUGAGAGUGUGG	chr7:158133865-158134119(-)$1	254	164	204	13.0133
UGGGAGUGACCUGCGCGGGAGCCCUCUGACCUGCGUGGGA	chr7:158349479-158349827(-)$1	348	78	118	15.1296
GCAGGUGUCACCUCUUAUGGUGCGAGUGUGGGUGUGAGUG	chr7:158126018-158126263(-)$1	245	173	213	13.7898
CCGGCAGCGUCCUGGGGCCCCCGUAGCGGGGCUGGACCAU	chr11:124492743-124493223(+)$1	480	198	238	13.0111
gugugugAGUGCAUUGUACAUGAUGGUGUGAGUGCACGUG	chr12:133112989-133113277(+)$1	288	206	246	11.9135
GUGAAUGCAGCCGAAUGAUCACAUCUGCAUGAGGGGUGUU	chr17:79964135-79964363(+)$1	228	156	196	14.9275
CUGCUGGCCCUGUCCAGACUCUCAUACUGUGGGGCAGGGU	chr7:66165663-66165945(+)$1	282	189	229	15.2854
UGGUGAGAGUAUGGAUGUGAGUGACCUCUUUGUGCCUCAG	chr7:158125060-158125294(-)$1	234	50	90	14.8599
ACAGUUCAAAGUAAGACAUACCUCAUCUUAAUGUGGAUUG	chr9:95013706-95013955(-)$1	249	134	174	12.4345
ACGGGUGUUCGGGUCCCAGCAGGAGGAUGUAGGGCUGACC	chr17:7077792-7078045(-)$1	253	159	199	13.0241
GCCCGUGCUGGUUGAGGACACUUGUCUGUGCUUCAAUGCC	chr20:3194531-3194794(+)$1	263	107	147	12.4984
agcauccgugugaccguccaugugagagugugaccgucca	chr16:1785706-1785974(+)$1	268	48	88	14.5220
uugcgggugcaugugcaugcuuggggggcgugugcguguc	chr17:79964070-79964282(+)$1	212	39	79	14.5243
UGUGUCUGCCACGGCCUCAGCCCCGUUGCUUCGGUCGAUG	chr19:944238-944535(+)$1	297	197	237	14.2644
gcacgugccugugugugugugugugugugCCUACUCCCAU	chr2:240212161-240212485(-)$1	324	180	220	11.8118
gcguugugugugcacgugugcgugugugagugcaugugug	chr9:136780914-136781196(-)$1	282	228	268	15.0687
AUUAGAGGUUUGUAUGGGCCUGACUGAGGGGUUGUGGAAU	chr3:37904158-37904432(+)$1	274	87	127	14.5385
cgcgccgcgugaucgugcgcugugugugugugugaggugc	chr21:44269123-44269354(-)$1	231	116	156	15.5657
GCGCUGUGACCCUGCAGUAGCGCAAAGGCUGCGCAGCGUU	chrX:70766511-70766753(+)$1	242	112	152	13.8259

#DB
))))))))))))))))))...))))).))).)))))))))	chr21:44269047-44269274(-)$1	1	141	181	13.2848
.((((((...(((((.(((((......))))).)))))..	chr5:176516875-176517128(+)$1	1	172	212	13.5055
(..((((.((((...((.(((......))).))..)))).	chr20:43033564-43033817(+)$1	1	98	138	13.6111
.)))).))))(((((((.((((......)))).)))))))	chr6:349144-349423(+)$1	1	48	88	12.1152
((((..((((.((((.(((((......))))))))).)))	chrX:70766553-70766769(+)$1	1	70	110	13.8259
((((((((..((..(((..........)))..)).)))))	chr17:79964082-79964335(+)$1	1	209	249	14.9275
(.((((((.(((((((..(((......)))..))))))).	chr1:987788-988036(+)$1	1	12	52	16.0114
((((.((((((((((.(.(((......))).).)))))))	chr17:79048140-79048543(+)$1	1	313	353	20.0699
((((((((((....(.(((((.........))))))))))	chr4:1805370-1805601(+)$1	1	14	54	15.6774
((((((.(((((((..(((..(((...))).)))))))).	chr12:100937241-100937512(+)$1	1	136	176	11.7467
.(((.(((.(((((...............))))).))).)	chr17:7079061-7079298(-)$1	1	53	93	11.9875
.(((((((.((((....((((......))))....)))))	chr3:172020544-172020853(+)$1	1	21	61	12.8950
(((..(((((((((((..............))))))))))	chr11:497512-497783(-)$1	1	52	92	16.8407
(((((((((.((((((((((.........))))))).)))	chr3:48467241-48467539(-)$1	1	196	236	14.8306
)))(((((((...((.(((........))).))...))))	chr20:43030786-43031111(+)$1	1	94	134	13.0964
(((((((((((.(((.((((((......)))))).))).)	chr9:136719084-136719331(-)$1	1	158	198	15.8303
((.((.((((.((((.(((.(......).))).))..)).	chr5:882836-883096(-)$1	1	166	206	13.1679
(((..(.(((..(((....(((....)))....)))))).	chr16:8943705-8943963(+)$1	1	132	172	12.7789
(.((.((((..((((.(((((......))))).)))))))	chr1:17965652-17965932(+)$1	1	195	235	13.0335
..(.(((..(..((((..(((......)))))))..)..)	chr2:233740584-233740872(+)$1	1	201	241	14.7261
.))))))((((((((((((.(......).)))))))))))	chr20:62363597-62363899(+)$1	1	256	296	17.2859
((.(((((((((((((............))))))))))))	chr1:109642821-109643031(+)$1	1	97	137	15.0130
(.((..((((((((((..((........))..))))))))	chr19:47732541-47732790(-)$1	1	155	195	14.4383
))).((((((((((....(((.......)))...))))))	chr14:70235844-70236083(+)$1	1	195	235	14.0958
.(((((((....(((.(((........))).)))....))	chr13:114175479-114175767(+)$1	1	39	79	12.8699
((((((((..((..(((..........)))..)).)))))	chr17:79964163-79964390(+)$1	1	128	168	14.9275
).)))(((((((..(.(((((......))))).)))))))	chr1:146684699-146684996(-)$1	1	252	292	15.6265
(((..(((((.(((((((((((.....).)))))))))).	chr4:2070181-2070553(+)$1	1	177	217	14.0893
.(.(((((((((..(.((((((....)))))).).)))))	chr7:158133865-158134119(-)$1	1	164	204	13.0133
.((..((..((((((((((..........)))))))))).	chr7:158349479-158349827(-)$1	1	78	118	15.1296
(((((((((((.((.(((..(((....))).))).)))))	chr7:158126018-158126263(-)$1	1	173	213	13.7898
(((((((..((.(((((((((......))))))...))).	chr11:124492743-124493223(+)$1	1	198	238	13.0111
(((((((.(((((((.(((((....)))))))))))).))	chr12:133112989-133113277(+)$1	1	206	246	11.9135
((((((((..((..(((..........)))..)).)))))	chr17:79964135-79964363(+)$1	1	156	196	14.9275
((.((((((((((((..((.........)).)))))))))	chr7:66165663-66165945(+)$1	1	189	229	15.2854
(.((((((((..((....(((......)))....))...)	chr7:158125060-158125294(-)$1	1	50	90	14.8599
.(((((((...(((((.........)))))...)))))))	chr9:95013706-95013955(-)$1	1	134	174	12.4345
(((((....((((((((.(((......)))..))..))))	chr17:7077792-7078045(-)$1	1	159	199	13.0241
))..))))..(((((((.(((......))))))))))(((	chr20:3194531-3194794(+)$1	1	107	147	12.4984
(((.((((((.(((.((((((......))).))).)))))	chr16:1785706-1785974(+)$1	1	48	88	14.5220
(((((((.((((((((((((((...)))))))))))))).	chr17:79964070-79964282(+)$1	1	39	79	14.5243
((.(...((..(((((..(((......)))..)))))..)	chr19:944238-944535(+)$1	1	197	237	14.2644
)))))))((((.(((.(.(((.((....)).))).).)))	chr2:240212161-240212485(-)$1	1	180	220	11.8118
(((....((((((((((((((........)))))))))))	chr9:136780914-136781196(-)$1	1	228	268	15.0687
((.(.(.((((.(((((.(((......))).)))))))))	chr3:37904158-37904432(+)$1	1	87	127	14.5385
((((((((((.(((.(((((.........))))).)))))	chr21:44269123-44269354(-)$1	1	116	156	15.5657
((((..((((.((((.(((((......))))))))).)))	chrX:70766511-70766753(+)$1	1	112	152	13.8259

#PSSM
= : 0.17	g : 0.14	i : 0.14	[ : 0.08	d : 0.06	f : 0.06	c : 0.06	b : 0.04	! : 0.04	e : 0.04	2 : 0.02	] : 0.02	a : 0.02	: : 0.02	$ : 0.02	h : 0.02	
= : 0.17	g : 0.17	i : 0.12	f : 0.10	[ : 0.08	c : 0.08	d : 0.06	! : 0.04	b : 0.04	e : 0.04	] : 0.02	a : 0.02	h : 0.02	
g : 0.17	= : 0.12	i : 0.12	[ : 0.12	f : 0.10	c : 0.08	b : 0.08	d : 0.06	h : 0.04	! : 0.02	a : 0.02	2 : 0.02	
= : 0.14	g : 0.14	i : 0.12	f : 0.08	d : 0.08	! : 0.08	c : 0.06	b : 0.06	[ : 0.04	h : 0.04	a : 0.04	: : 0.02	2 : 0.02	# : 0.02	
= : 0.17	! : 0.14	i : 0.12	d : 0.10	f : 0.08	[ : 0.08	g : 0.08	c : 0.06	b : 0.04	h : 0.04	" : 0.02	# : 0.02	
= : 0.21	i : 0.12	g : 0.10	d : 0.08	c : 0.08	f : 0.06	! : 0.06	a : 0.04	b : 0.04	h : 0.04	# : 0.04	] : 0.02	[ : 0.02	e : 0.02	" : 0.02	
= : 0.23	d : 0.19	i : 0.12	g : 0.10	f : 0.06	[ : 0.06	c : 0.06	h : 0.04	# : 0.04	e : 0.02	b : 0.02	" : 0.02	
= : 0.25	d : 0.19	i : 0.12	g : 0.08	[ : 0.06	c : 0.06	! : 0.06	b : 0.04	" : 0.02	f : 0.02	e : 0.02	h : 0.02	# : 0.02	
= : 0.27	d : 0.19	! : 0.12	[ : 0.06	i : 0.06	g : 0.06	" : 0.04	b : 0.04	# : 0.04	c : 0.02	e : 0.02	h : 0.02	: : 0.02	
= : 0.27	d : 0.19	! : 0.10	g : 0.08	i : 0.06	e : 0.06	" : 0.04	b : 0.04	[ : 0.02	c : 0.02	a : 0.02	# : 0.02	h : 0.02	: : 0.02	
= : 0.23	[ : 0.12	g : 0.10	b : 0.10	! : 0.10	d : 0.08	i : 0.06	e : 0.06	# : 0.04	" : 0.04	c : 0.02	
= : 0.21	d : 0.12	e : 0.10	g : 0.10	[ : 0.10	b : 0.08	i : 0.06	c : 0.06	! : 0.06	# : 0.04	" : 0.02	
= : 0.21	c : 0.17	e : 0.12	d : 0.12	! : 0.10	g : 0.08	b : 0.06	i : 0.04	" : 0.04	# : 0.02	
= : 0.21	c : 0.14	e : 0.12	g : 0.10	d : 0.10	! : 0.10	b : 0.08	i : 0.04	# : 0.04	" : 0.02	
= : 0.19	c : 0.17	g : 0.10	d : 0.10	e : 0.08	a : 0.06	# : 0.06	[ : 0.06	i : 0.04	b : 0.04	" : 0.02	! : 0.02	x : 0.02	
[ : 0.29	= : 0.17	c : 0.10	g : 0.08	# : 0.08	e : 0.08	b : 0.04	! : 0.04	i : 0.02	x : 0.02	d : 0.02	f : 0.02	
e : 0.19	c : 0.19	! : 0.10	= : 0.10	# : 0.08	g : 0.06	f : 0.06	b : 0.04	a : 0.04	i : 0.02	x : 0.02	w : 0.02	u : 0.02	r : 0.02	
e : 0.17	[ : 0.14	c : 0.12	= : 0.10	! : 0.08	s : 0.06	f : 0.06	# : 0.06	i : 0.02	x : 0.02	d : 0.02	w : 0.02	g : 0.02	u : 0.02	b : 0.02	r : 0.02	
c : 0.34	e : 0.17	= : 0.10	s : 0.06	f : 0.06	d : 0.04	b : 0.04	3 : 0.02	x : 0.02	w : 0.02	g : 0.02	# : 0.02	u : 0.02	! : 0.02	r : 0.02	
c : 0.27	e : 0.17	s : 0.08	f : 0.06	= : 0.06	d : 0.04	! : 0.04	q : 0.04	[ : 0.04	r : 0.04	3 : 0.02	x : 0.02	w : 0.02	g : 0.02	u : 0.02	b : 0.02	
c : 0.29	e : 0.14	s : 0.08	r : 0.08	q : 0.06	f : 0.06	= : 0.06	d : 0.04	a : 0.04	3 : 0.02	! : 0.02	x : 0.02	w : 0.02	u : 0.02	
o : 0.40	r : 0.10	s : 0.08	q : 0.08	c : 0.06	f : 0.04	e : 0.02	d : 0.02	x : 0.02	w : 0.02	u : 0.02	p : 0.02	a : 0.02	m : 0.02	= : 0.02	[ : 0.02	
o : 0.44	r : 0.10	s : 0.08	q : 0.08	m : 0.06	c : 0.04	e : 0.02	x : 0.02	w : 0.02	u : 0.02	p : 0.02	n : 0.02	l : 0.02	b : 0.02	
o : 0.44	r : 0.10	s : 0.08	q : 0.08	m : 0.08	e : 0.02	c : 0.02	x : 0.02	w : 0.02	u : 0.02	p : 0.02	n : 0.02	l : 0.02	b : 0.02	
o : 0.44	r : 0.10	m : 0.10	s : 0.08	q : 0.08	l : 0.04	e : 0.02	x : 0.02	w : 0.02	u : 0.02	p : 0.02	n : 0.02	
o : 0.44	s : 0.08	r : 0.08	q : 0.08	m : 0.08	e : 0.06	l : 0.02	x : 0.02	w : 0.02	u : 0.02	p : 0.02	n : 0.02	= : 0.02	
o : 0.44	s : 0.08	r : 0.08	q : 0.08	m : 0.04	e : 0.04	] : 0.02	l : 0.02	x : 0.02	w : 0.02	c : 0.02	u : 0.02	p : 0.02	n : 0.02	f : 0.02	= : 0.02	
c : 0.40	e : 0.14	r : 0.08	a : 0.06	o : 0.04	q : 0.04	f : 0.04	x : 0.02	d : 0.02	w : 0.02	u : 0.02	p : 0.02	s : 0.02	= : 0.02	m : 0.02	
c : 0.42	e : 0.14	r : 0.06	f : 0.06	] : 0.06	b : 0.06	d : 0.04	= : 0.04	x : 0.02	w : 0.02	s : 0.02	q : 0.02	
c : 0.42	e : 0.19	= : 0.12	f : 0.06	b : 0.06	d : 0.04	r : 0.02	w : 0.02	g : 0.02	4 : 0.02	
] : 0.23	e : 0.17	2 : 0.14	= : 0.14	d : 0.06	g : 0.06	f : 0.06	c : 0.04	4 : 0.04	3 : 0.02	
e : 0.19	= : 0.17	2 : 0.14	c : 0.12	4 : 0.06	g : 0.06	f : 0.06	b : 0.04	d : 0.04	3 : 0.04	a : 0.02	i : 0.02	
= : 0.19	] : 0.14	b : 0.12	e : 0.10	c : 0.10	g : 0.08	d : 0.06	4 : 0.06	f : 0.04	3 : 0.04	i : 0.02	
= : 0.21	e : 0.12	g : 0.12	c : 0.12	b : 0.10	d : 0.08	3 : 0.06	4 : 0.04	a : 0.04	2 : 0.02	f : 0.02	i : 0.02	
= : 0.23	] : 0.21	g : 0.14	e : 0.10	2 : 0.06	d : 0.06	4 : 0.04	3 : 0.04	b : 0.04	c : 0.02	i : 0.02	
= : 0.23	g : 0.14	d : 0.10	i : 0.10	c : 0.10	e : 0.08	2 : 0.06	a : 0.04	3 : 0.04	b : 0.04	4 : 0.02	
= : 0.25	g : 0.14	c : 0.12	d : 0.10	i : 0.10	] : 0.08	e : 0.06	2 : 0.02	a : 0.02	4 : 0.02	b : 0.02	3 : 0.02	
= : 0.27	c : 0.17	d : 0.14	g : 0.10	i : 0.10	e : 0.06	2 : 0.04	b : 0.02	4 : 0.02	] : 0.02	3 : 0.02	
= : 0.29	d : 0.17	g : 0.14	i : 0.10	c : 0.08	e : 0.04	] : 0.04	2 : 0.04	4 : 0.02	b : 0.02	3 : 0.02	
= : 0.25	] : 0.17	g : 0.12	d : 0.12	i : 0.10	c : 0.10	4 : 0.02	> : 0.02	h : 0.02	e : 0.02	b : 0.02	

#score	666.3193815811192
#seq	47
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_transcript_m3_run2.txt

#BEAR
[fffffflllffffff	chr19:45571284-45571545(+)$1	261	86	102	9.5230
ffffffmmmmffffff	chr17:80194097-80194356(+)$1	259	10	26	10.7758
ggggggmmmmgggggg	chr4:39460321-39460585(-)$1	264	234	250	7.5599
======mmmm======	chr4:39299119-39299363(-)$1	244	222	238	6.9044
fffcccmmmmccc]ff	chr16:58959495-58959708(+)$1	213	36	52	8.6660
ffffffmmmmffffff	chr9:139718017-139718306(+)$1	289	213	229	10.7758
ffffffmmmmffffff	chr20:56136586-56136834(+)$1	248	206	222	10.7758
ffffffooooooffff	chr2:27356158-27356477(-)$1	319	213	229	9.0441
ffffffnnnnnfffff	chr5:134259769-134260007(+)$1	238	216	232	9.1152
ffffffmmmmffffff	chr19:1106198-1106447(+)$1	249	105	121	10.7758
fffffflllffffffi	chr6:37139166-37139392(+)$1	226	185	201	9.0993
fff!!ammmma22fff	chr9:139685915-139686186(+)$1	271	208	224	7.7306
ffffffnnnnnfffff	chrM:4192-4407(+)$1	215	166	182	9.1152
ggggggmmmmgggggg	chr17:80050938-80051192(-)$1	254	48	64	7.5599
ffffffmmmmffffff	chr19:54024502-54024758(+)$1	256	132	148	10.7758
ffffffmmmmffffff	chr9:139726256-139726554(+)$1	298	276	292	10.7758
ffffffmmmmffffff	chr5:179248104-179248383(+)$1	279	72	88	10.7758
ffffffmmmmffffff	chr19:1429565-1429822(+)$1	257	86	102	10.7758
ggggggmmmmgggggg	chr3:38388367-38388611(+)$1	244	86	102	7.5599
[fffffflllffffff	chr6:37139192-37139410(+)$1	218	20	36	9.5230
:fffffflllffffff	chr9:116138863-116139110(-)$1	247	15	31	8.2137
ffffffmmmmffffff	chrM:14222-14435(-)$1	213	151	167	10.7758
ffffffnnnnnfffff	chr12:46766145-46766378(-)$1	233	215	231	9.1152
==[cccmmmmccc]==	chrM:14282-14501(-)$1	219	9	25	7.0921
cfffffflllffffff	chr7:150777605-150777858(-)$1	253	185	201	9.4117
ffffffmmmmffffff	chr19:18668655-18668997(+)$1	342	6	22	10.7758
iiiiiimmmmiiiiii	chr14:24568831-24569086(+)$1	255	127	143	6.5186
cc[cccmmmmccc]cc	chr17:77078044-77078299(+)$1	255	30	46	6.9314
ffffffmmmmffffff	chr17:7010948-7011255(-)$1	307	88	104	10.7758
==[cccmmmmccc]==	chrM:14301-14514(-)$1	213	22	38	7.0921
ffffffooooooffff	chr5:175958297-175958551(-)$1	254	164	180	9.0441
======mmmm======	chr9:140347388-140347614(-)$1	226	201	217	6.9044
ffffffnnnnnfffff	chrM:4217-4432(+)$1	215	141	157	9.1152
cc[cccmmmmccc]cc	chr19:5924182-5924445(-)$1	263	4	20	6.9314
cc[cccmmmmccc]cc	chr7:100282732-100283073(-)$1	341	36	52	6.9314
ffffffnnnnnfffff	chr7:99627945-99628205(+)$1	260	129	145	9.1152
ffffffooooooffff	chr19:46357608-46357893(-)$1	285	191	207	9.0441
ffffffnnnnnfffff	chrM:4338-4560(+)$1	222	20	36	9.1152
efffffflllffffff	chr3:5021991-5022271(+)$1	280	151	167	9.3160
fffffflllffffffF	chr19:18965962-18966230(+)$1	268	162	178	8.9763
[fffffflllffffff	chr9:140347334-140347564(-)$1	230	194	210	9.5230
ffffffooooooffff	chr1:145441068-145441318(+)$1	250	21	37	9.0441
ffffffmmmmffffff	chr1:24119150-24119403(+)$1	253	141	157	10.7758
ffffffmmmmffffff	chr11:64534863-64535123(-)$1	260	184	200	10.7758
fffffflllffffff3	chrM:3215-3459(+)$1	244	142	158	9.0088
ggggggmmmmgggggg	chr1:156351927-156352197(+)$1	270	108	124	7.5599
gggg[ammmma]gggg	chr3:133465238-133465453(+)$1	215	6	22	7.2383
ffffffmmmmffffff	chr7:1027081-1027357(+)$1	276	121	137	10.7758
ffffffnnnnnfffff	chrM:4207-4417(+)$1	210	151	167	9.1152
[fffffflllffffff	chr17:79868892-79869126(-)$1	234	55	71	9.5230

#otherMatches

#Seq PSSM
UGGGCCCGGUGGGCCU	chr19:45571284-45571545(+)$1	261	86	102	9.5230
GUGAGGGUGGCCUCAC	chr17:80194097-80194356(+)$1	259	10	26	10.7758
UGGGCUUUUUGGCCUA	chr4:39460321-39460585(-)$1	264	234	250	7.5599
ggggaaaggauucccu	chr4:39299119-39299363(-)$1	244	222	238	6.9044
CAUUGUAGUAACAUAU	chr16:58959495-58959708(+)$1	213	36	52	8.6660
CCCUGCUGACGUGGGG	chr9:139718017-139718306(+)$1	289	213	229	10.7758
UUUCAGACUCUUGAGA	chr20:56136586-56136834(+)$1	248	206	222	10.7758
GAGGGGCCAGUACUCC	chr2:27356158-27356477(-)$1	319	213	229	9.0441
UUAUUUGGGGGGAAUG	chr5:134259769-134260007(+)$1	238	216	232	9.1152
GGCCACAGCCGUGGCC	chr19:1106198-1106447(+)$1	249	105	121	10.7758
GCCUUUUGUAAAGGUC	chr6:37139166-37139392(+)$1	226	185	201	9.0993
GGCAGGGGAUCGAGCC	chr9:139685915-139686186(+)$1	271	208	224	7.7306
gagaauccaaaauucu	chrM:4192-4407(+)$1	215	166	182	9.1152
GCUGGGGAUGCUCAGC	chr17:80050938-80051192(-)$1	254	48	64	7.5599
UGGUGGGGCCCCGCCG	chr19:54024502-54024758(+)$1	256	132	148	10.7758
UGUGGGGUCACCUGCA	chr9:139726256-139726554(+)$1	298	276	292	10.7758
AGGCCGGACACGGCCU	chr5:179248104-179248383(+)$1	279	72	88	10.7758
GAGGCUUAGAAGUCUC	chr19:1429565-1429822(+)$1	257	86	102	10.7758
CUCCGCUUCGGUGGGG	chr3:38388367-38388611(+)$1	244	86	102	7.5599
AUCGACUUCGGGUCGG	chr6:37139192-37139410(+)$1	218	20	36	9.5230
CGCUGCCGACGGCAGC	chr9:116138863-116139110(-)$1	247	15	31	8.2137
GGGUCAGGGUUGAUUC	chrM:14222-14435(-)$1	213	151	167	10.7758
GGUUGGGCUGGCCAGC	chr12:46766145-46766378(-)$1	233	215	231	9.1152
GGGAAUGAUGGUUGUC	chrM:14282-14501(-)$1	219	9	25	7.0921
UGUUGGGGCCCCCGAC	chr7:150777605-150777858(-)$1	253	185	201	9.4117
UGGUGACGUUUCGCCG	chr19:18668655-18668997(+)$1	342	6	22	10.7758
UCUGGCUCUUGUCAGA	chr14:24568831-24569086(+)$1	255	127	143	6.5186
CUGAUGUGUACGUGGG	chr17:77078044-77078299(+)$1	255	30	46	6.9314
GACCUGAAAGCAGGUC	chr17:7010948-7011255(-)$1	307	88	104	10.7758
GGGAAUGAUGGUUGUC	chrM:14301-14514(-)$1	213	22	38	7.0921
CAGCCCUGAACUGGGC	chr5:175958297-175958551(-)$1	254	164	180	9.0441
CUCCAGCUGCCUGGGG	chr9:140347388-140347614(-)$1	226	201	217	6.9044
gagaauccaaaauucu	chrM:4217-4432(+)$1	215	141	157	9.1152
CGCGGCCAAGGCCUUG	chr19:5924182-5924445(-)$1	263	4	20	6.9314
CCUGGGCCCACUCUGG	chr7:100282732-100283073(-)$1	341	36	52	6.9314
UUCAAUUGAGUGUUGA	chr7:99627945-99628205(+)$1	260	129	145	9.1152
UUUUUCACUCAAGAGG	chr19:46357608-46357893(-)$1	285	191	207	9.0441
gagaauccaaaauucu	chrM:4338-4560(+)$1	222	20	36	9.1152
GGGCGGGUCACUCGCC	chr3:5021991-5022271(+)$1	280	151	167	9.3160
GGAGCCUUGGGCUCUG	chr19:18965962-18966230(+)$1	268	162	178	8.9763
GGGCUGCCUGGCAGCC	chr9:140347334-140347564(-)$1	230	194	210	9.5230
AGCUUUCUAUAAGAAG	chr1:145441068-145441318(+)$1	250	21	37	9.0441
AGCUGGAGGACCGGCU	chr1:24119150-24119403(+)$1	253	141	157	10.7758
GCUGGGUCUGCCUGGC	chr11:64534863-64535123(-)$1	260	184	200	10.7758
GGCAUUCCUAAUGCUU	chrM:3215-3459(+)$1	244	142	158	9.0088
AAUGACCUCUGUCAUU	chr1:156351927-156352197(+)$1	270	108	124	7.5599
GAGUCCGACUGUGCUC	chr3:133465238-133465453(+)$1	215	6	22	7.2383
CUGGGGUAGGCCUCGG	chr7:1027081-1027357(+)$1	276	121	137	10.7758
gagaauccaaaauucu	chrM:4207-4417(+)$1	210	151	167	9.1152
UGCCCGGGGACCGGGC	chr17:79868892-79869126(-)$1	234	55	71	9.5230

#DB
.((((((...))))))	chr19:45571284-45571545(+)$1	1	86	102	9.5230
((((((....))))))	chr17:80194097-80194356(+)$1	1	10	26	10.7758
((((((....))))))	chr4:39460321-39460585(-)$1	1	234	250	7.5599
((((((....))))))	chr4:39299119-39299363(-)$1	1	222	238	6.9044
((((((....))).))	chr16:58959495-58959708(+)$1	1	36	52	8.6660
((((((....))))))	chr9:139718017-139718306(+)$1	1	213	229	10.7758
((((((....))))))	chr20:56136586-56136834(+)$1	1	206	222	10.7758
((((((......))))	chr2:27356158-27356477(-)$1	1	213	229	9.0441
((((((.....)))))	chr5:134259769-134260007(+)$1	1	216	232	9.1152
((((((....))))))	chr19:1106198-1106447(+)$1	1	105	121	10.7758
((((((...))))))(	chr6:37139166-37139392(+)$1	1	185	201	9.0993
(((..(....)..)))	chr9:139685915-139686186(+)$1	1	208	224	7.7306
((((((.....)))))	chrM:4192-4407(+)$1	1	166	182	9.1152
((((((....))))))	chr17:80050938-80051192(-)$1	1	48	64	7.5599
((((((....))))))	chr19:54024502-54024758(+)$1	1	132	148	10.7758
((((((....))))))	chr9:139726256-139726554(+)$1	1	276	292	10.7758
((((((....))))))	chr5:179248104-179248383(+)$1	1	72	88	10.7758
((((((....))))))	chr19:1429565-1429822(+)$1	1	86	102	10.7758
((((((....))))))	chr3:38388367-38388611(+)$1	1	86	102	7.5599
.((((((...))))))	chr6:37139192-37139410(+)$1	1	20	36	9.5230
.((((((...))))))	chr9:116138863-116139110(-)$1	1	15	31	8.2137
((((((....))))))	chrM:14222-14435(-)$1	1	151	167	10.7758
((((((.....)))))	chr12:46766145-46766378(-)$1	1	215	231	9.1152
((.(((....))).))	chrM:14282-14501(-)$1	1	9	25	7.0921
(((((((...))))))	chr7:150777605-150777858(-)$1	1	185	201	9.4117
((((((....))))))	chr19:18668655-18668997(+)$1	1	6	22	10.7758
((((((....))))))	chr14:24568831-24569086(+)$1	1	127	143	6.5186
((.(((....))).))	chr17:77078044-77078299(+)$1	1	30	46	6.9314
((((((....))))))	chr17:7010948-7011255(-)$1	1	88	104	10.7758
((.(((....))).))	chrM:14301-14514(-)$1	1	22	38	7.0921
((((((......))))	chr5:175958297-175958551(-)$1	1	164	180	9.0441
((((((....))))))	chr9:140347388-140347614(-)$1	1	201	217	6.9044
((((((.....)))))	chrM:4217-4432(+)$1	1	141	157	9.1152
((.(((....))).))	chr19:5924182-5924445(-)$1	1	4	20	6.9314
((.(((....))).))	chr7:100282732-100283073(-)$1	1	36	52	6.9314
((((((.....)))))	chr7:99627945-99628205(+)$1	1	129	145	9.1152
((((((......))))	chr19:46357608-46357893(-)$1	1	191	207	9.0441
((((((.....)))))	chrM:4338-4560(+)$1	1	20	36	9.1152
)((((((...))))))	chr3:5021991-5022271(+)$1	1	151	167	9.3160
((((((...))))))(	chr19:18965962-18966230(+)$1	1	162	178	8.9763
.((((((...))))))	chr9:140347334-140347564(-)$1	1	194	210	9.5230
((((((......))))	chr1:145441068-145441318(+)$1	1	21	37	9.0441
((((((....))))))	chr1:24119150-24119403(+)$1	1	141	157	10.7758
((((((....))))))	chr11:64534863-64535123(-)$1	1	184	200	10.7758
((((((...)))))).	chrM:3215-3459(+)$1	1	142	158	9.0088
((((((....))))))	chr1:156351927-156352197(+)$1	1	108	124	7.5599
((((.(....).))))	chr3:133465238-133465453(+)$1	1	6	22	7.2383
((((((....))))))	chr7:1027081-1027357(+)$1	1	121	137	10.7758
((((((.....)))))	chrM:4207-4417(+)$1	1	151	167	9.1152
.((((((...))))))	chr17:79868892-79869126(-)$1	1	55	71	9.5230

#PSSM
f : 0.60	g : 0.10	[ : 0.08	= : 0.08	c : 0.08	: : 0.02	i : 0.02	e : 0.02	
f : 0.74	g : 0.10	= : 0.08	c : 0.06	i : 0.02	
f : 0.74	g : 0.10	[ : 0.10	= : 0.04	i : 0.02	
f : 0.70	c : 0.12	g : 0.10	= : 0.04	! : 0.02	i : 0.02	
f : 0.70	c : 0.12	g : 0.08	= : 0.04	! : 0.02	i : 0.02	[ : 0.02	
f : 0.70	c : 0.12	g : 0.08	= : 0.04	a : 0.04	i : 0.02	
m : 0.58	f : 0.14	n : 0.14	o : 0.08	l : 0.06	
m : 0.58	l : 0.19	n : 0.14	o : 0.08	
m : 0.58	l : 0.19	n : 0.14	o : 0.08	
m : 0.58	l : 0.14	n : 0.14	o : 0.08	f : 0.06	
f : 0.48	n : 0.14	c : 0.12	g : 0.08	o : 0.08	= : 0.04	a : 0.04	i : 0.02	
f : 0.62	c : 0.12	g : 0.08	o : 0.08	= : 0.04	2 : 0.02	i : 0.02	] : 0.02	
f : 0.70	c : 0.12	g : 0.10	= : 0.04	2 : 0.02	i : 0.02	
f : 0.72	] : 0.12	g : 0.10	= : 0.04	i : 0.02	
f : 0.74	g : 0.10	= : 0.08	c : 0.06	i : 0.02	
f : 0.68	g : 0.10	= : 0.08	c : 0.06	i : 0.04	F : 0.02	3 : 0.02	

#score	452.1445535960281
#seq	50
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_UTR_m2_run2.txt

#BEAR
[ccc[bb[ccclllccc]bbccc]	chr1:22263565-22263826(-)$1	261	213	237	6.6264
ffffffddddmmmmdddd:iiiii	chr1:182360387-182360648(-)$1	261	133	157	9.3345
ccc[dddd[ammmma]dddd]ccc	chr17:7476586-7476837(+)$1	251	175	199	9.0024
iiiiii[cccmmmmccc22iiiii	chr1:2125972-2126321(-)$1	349	37	61	8.8546
[ccc[eeeeemmmmeeeeeccc]e	chr5:154136560-154136852(+)$1	292	178	202	8.6355
fffff]dddd4444dddd22ccc]	chr19:19739423-19739658(-)$1	235	198	222	8.6779
ccc[ddddoooooodddd333ccc	chr16:29677290-29677574(+)$1	284	124	148	10.2637
cc"""bb[bbmmmmbbbb333ccc	chr17:80109773-80110027(-)$1	254	74	98	7.0826
eeeee[eeeeellleeeee]eeee	chr1:90493044-90493313(+)$1	269	209	233	7.9438
bb!!ddddoooooodddd22bb]b	chr20:35491717-35491998(-)$1	281	120	144	8.5720
"""dddd[ccclllccc333dddd	chr11:66394154-66394392(+)$1	238	181	205	8.3244
eeeee!!cccmmmmccc333eeee	chr5:154134902-154135257(+)$1	355	176	200	10.3569
eeeee[ddddlllddddeeeee]e	chr7:1889383-1889623(-)$1	240	29	53	9.8091
ddddddddoooooodddd22dddd	chr12:123997898-123998194(-)$1	296	35	59	9.5595
ccccc]dddd4444dddd333iii	chr17:75212399-75212674(+)$1	275	218	242	9.3672
[ccc[a[cccmmmmccc]a]ccc]	chr17:75211637-75211875(+)$1	238	45	69	9.5025
[adddd[cccmmmmccc]dddd22	chr3:183353942-183354188(+)$1	246	20	44	7.7902
[dddd[ddddmmmmdddddddd]f	chr22:50016293-50016538(-)$1	245	157	181	10.7787
eee"""ddddmmmmddddeeeee:	chr22:20067968-20068234(+)$1	266	180	204	10.6734
hhhh[a[ddddllldddda]hhhh	chr8:145149893-145150124(+)$1	231	57	81	8.4353
[ccc!!ddddmmmmdddd22ccc2	chr4:78078310-78078634(+)$1	324	174	198	12.2788
d####eeeeemmmmeeeee333dd	chr2:159314183-159314428(+)$1	245	62	86	8.4095
eeeeddddoooooodddd22eeee	chr7:5569343-5569620(-)$1	277	169	193	10.2004
:eeeeeddddmmmmdddd]eeeee	chr19:4038738-4038998(+)$1	260	97	121	10.3593
ddd"""ddddoooooodddddddd	chr4:140098113-140098347(-)$1	234	185	209	8.9342
ddccc[ddddoooooodddd]ccc	chr20:62330182-62330422(-)$1	240	42	66	8.8959
dddd!!ddddmmmmdddd22dddd	chr11:612025-612294(+)$1	269	206	230	11.9101
fbbbb[ddddmmmmdddd]bb444	chr17:75211536-75211796(+)$1	260	104	128	9.6400
eee####cccmmmmccc]eeeee:	chr11:2153979-2154238(-)$1	259	74	98	8.2641
ee"""eeeeellleeeee333eee	chr10:43891997-43892284(-)$1	287	133	157	8.5470
fffffaddddmmmmdddd22a]ff	chr1:12656086-12656359(-)$1	273	6	30	10.8274
[dddd[ddddmmmmdddddddd]a	chr17:62501964-62502237(-)$1	273	2	26	10.8333
cccbb[ddddmmmmdddd333bb]	chr17:7387947-7388219(+)$1	272	146	170	11.3087
eeeee[ddddmmmmdddd]eeeee	chr22:20004133-20004419(-)$1	286	34	58	11.8205
ccc"""ddddmmmmdddd333ccc	chr19:16187264-16187547(+)$1	283	92	116	12.5516
eeee"""cccnnnnnccc333eee	chr19:50985396-50985651(+)$1	255	192	216	8.1183
cccdddd]bb4444dddd22dddd	chr12:109124505-109124766(-)$1	261	232	256	7.8174
eeeee!!cccmmmmccc22eeeee	chr6:86352561-86352821(-)$1	260	233	257	9.6449
ff[a!!ddddmmmmdddda]ffff	chr6:3259155-3259417(+)$1	262	53	77	11.0800
[a[bb[ddddmmmmdddd]bbadd	chr9:126030503-126030863(-)$1	360	305	329	10.4207
dddd[ddddnnnnndddd22dddd	chr2:54197770-54198043(-)$1	273	243	267	8.9010
eeee!!ddddmmmmdddd]eeeee	chr1:212458793-212459051(+)$1	258	226	250	12.0594
g:ccc[ddddmmmmdddd]ccc::	chr19:1881951-1882179(-)$1	228	128	152	8.7677
[eeeee!!ccclllccceeeeeff	chr19:1104622-1104880(+)$1	258	55	79	7.5923
eeccc[ddddmmmmddddccc]ee	chr5:176738850-176739091(-)$1	241	118	142	11.1550
eeeee[cccooooooccc]eeeee	chr19:18547928-18548199(-)$1	271	37	61	8.3937
accc!!ddddmmmmdddd]ccc::	chr7:1577326-1577614(+)$1	288	149	173	9.9782
b[eeeeeddddllldddd]eeeee	chr11:61583857-61584097(-)$1	240	50	74	9.5335
ff[bb[ddddlllddddbb]ffff	chr11:2152161-2152373(-)$1	212	103	127	8.0837

#otherMatches

#Seq PSSM
gcggaggggCUAGGGGCGCCCCGG	chr1:22263565-22263826(-)$1	261	213	237	6.6264
CCUGGAGGCCGUUGGGCCGGCCUG	chr1:182360387-182360648(-)$1	261	133	157	9.3345
CCCACCCGGCGCCGGGCGGGCGGG	chr17:7476586-7476837(+)$1	251	175	199	9.0024
CUCGCUGCAGAGGUCUGGAGGCgg	chr1:2125972-2126321(-)$1	349	37	61	8.8546
GUGCCUCCCCGCGCGGGGAGCGGC	chr5:154136560-154136852(+)$1	292	178	202	8.6355
UCCGGGCGGUGGGAGCCAAGUCGG	chr19:19739423-19739658(-)$1	235	198	222	8.6779
CAGAGACUGAAGAGGGUCAACCUG	chr16:29677290-29677574(+)$1	284	124	148	10.2637
AUAGAUGACCAGAAGGCAGGGAUG	chr17:80109773-80110027(-)$1	254	74	98	7.0826
AAAUUAAAUAUAAGGUAUUAGAUU	chr1:90493044-90493313(+)$1	269	209	233	7.9438
UCGGGGCCGAGGUGGGCCGAGAGC	chr20:35491717-35491998(-)$1	281	120	144	8.5720
CAAAUCUUGCUACUGGCUCUAGAU	chr11:66394154-66394392(+)$1	238	181	205	8.3244
GGCCUGGACUGCAGAGUGGGGGGC	chr5:154134902-154135257(+)$1	355	176	200	10.3569
UUGUCAUUCAUCUUGGAGGCAACU	chr7:1889383-1889623(-)$1	240	29	53	9.8091
GCACUUCACAUCGAUGAAGCGUGC	chr12:123997898-123998194(-)$1	296	35	59	9.5595
CUCUGUGUCUCAGAUGGCGAUUUU	chr17:75212399-75212674(+)$1	275	218	242	9.3672
UGUAGACGUCCCAGGGCCUGUGCU	chr17:75211637-75211875(+)$1	238	45	69	9.5025
GCUUGUUGCCGAUGGGCUGCGAAC	chr3:183353942-183354188(+)$1	246	20	44	7.7902
UUUGCUGGGCAGCUGCCUGUGGCC	chr22:50016293-50016538(-)$1	245	157	181	10.7787
GGGUAAAGAGGCUCCUCUCCCGGA	chr22:20067968-20068234(+)$1	266	180	204	10.6734
UCGUGGCGCCCCAGGGGCCGACGG	chr8:145149893-145150124(+)$1	231	57	81	8.4353
AGCCGGGGCUGUGAGGCCGAGGCG	chr4:78078310-78078634(+)$1	324	174	198	12.2788
CCCCUGCUGCCCGCGCGGUCUUGC	chr2:159314183-159314428(+)$1	245	62	86	8.4095
UGUUUGCCUUUUAUGGUAAUAACG	chr7:5569343-5569620(-)$1	277	169	193	10.2004
UUGCUCUUGGUUUUCCGACGGGUA	chr19:4038738-4038998(+)$1	260	97	121	10.3593
GGAAAAGGACGCCGCGGUCUUCCC	chr4:140098113-140098347(-)$1	234	185	209	8.9342
CCCUCUCGGGAAAUCCCCUGUGAG	chr20:62330182-62330422(-)$1	240	42	66	8.8959
GCUCUUGUAAAUAAUUGCUCGAGU	chr11:612025-612294(+)$1	269	206	230	11.9101
CCUCUUGCCCGGUCGGGUCAGCCC	chr17:75211536-75211796(+)$1	260	104	128	9.6400
UGACCACGGACGUUUCCAUCAGGU	chr11:2153979-2154238(-)$1	259	74	98	8.2641
CGUCACCUUGUCUCGGGGCCUCGG	chr10:43891997-43892284(-)$1	287	133	157	8.5470
AGGCCCAGCCCUCGGGUUUAGAGG	chr1:12656086-12656359(-)$1	273	6	30	10.8274
GUCGGGUUAUUCGAGUGACCGAGA	chr17:62501964-62502237(-)$1	273	2	26	10.8333
GUGGCCCCCCCUCGGGGGACAGCG	chr17:7387947-7388219(+)$1	272	146	170	11.3087
GGCGGGGCGGAGAUUCGCGUCGCC	chr22:20004133-20004419(-)$1	286	34	58	11.8205
GCCUCUGCGCCUCCGCGCCAUGGC	chr19:16187264-16187547(+)$1	283	92	116	12.5516
CAGCCAUCCCAAGAAGGGUUUGCU	chr19:50985396-50985651(+)$1	255	192	216	8.1183
GCGGCUUGGGAAGAGGCUGAGCCC	chr12:109124505-109124766(-)$1	261	232	256	7.8174
GGGAGCAGCGAGCACGCGUUUCCC	chr6:86352561-86352821(-)$1	260	233	257	9.6449
CGGCGAGGACCCGGGUCUGGCGCU	chr6:3259155-3259417(+)$1	262	53	77	11.0800
AGAGCAGGGAGCAAUCCCGGCCCC	chr9:126030503-126030863(-)$1	360	305	329	10.4207
CGGAGCGGCUAGACGCCGAGUCCG	chr2:54197770-54198043(-)$1	273	243	267	8.9010
CGCUGGCAGCGGCCGCUGAGGUGC	chr1:212458793-212459051(+)$1	258	226	250	12.0594
AAGAGGUGGUGAUCGCCAGCUCAG	chr19:1881951-1882179(-)$1	228	128	152	8.7677
UCCCCGCUAGCGGCGCUCGGGGUG	chr19:1104622-1104880(+)$1	258	55	79	7.5923
GGCGUUcccgcgggcggggcgucc	chr5:176738850-176739091(-)$1	241	118	142	11.1550
GCGGACCCCGUGGAAGGGUUUCGC	chr19:18547928-18548199(-)$1	271	37	61	8.3937
CGGGAUGCGGUCACCCGCCCCCAU	chr7:1577326-1577614(+)$1	288	149	173	9.9782
UACGCCGGGCAGGAUGCCACGGUG	chr11:61583857-61584097(-)$1	240	50	74	9.5335
CUGUGUGUUGGCCCAGCCAGAGUG	chr11:2152161-2152373(-)$1	212	103	127	8.0837

#DB
.(((.((.(((...))).))))).	chr1:22263565-22263826(-)$1	1	213	237	6.6264
))))))((((....)))).(((((	chr1:182360387-182360648(-)$1	1	133	157	9.3345
(((.((((.(....).)))).)))	chr17:7476586-7476837(+)$1	1	175	199	9.0024
((((((.(((....)))..)))))	chr1:2125972-2126321(-)$1	1	37	61	8.8546
.(((.(((((....)))))))).)	chr5:154136560-154136852(+)$1	1	178	202	8.6355
))))).))))....))))..))).	chr19:19739423-19739658(-)$1	1	198	222	8.6779
(((.((((......))))...)))	chr16:29677290-29677574(+)$1	1	124	148	10.2637
((...((.((....))))...)))	chr17:80109773-80110027(-)$1	1	74	98	7.0826
(((((.(((((...))))).))))	chr1:90493044-90493313(+)$1	1	209	233	7.9438
((..((((......))))..)).)	chr20:35491717-35491998(-)$1	1	120	144	8.5720
...((((.(((...)))...))))	chr11:66394154-66394392(+)$1	1	181	205	8.3244
(((((..(((....)))...))))	chr5:154134902-154135257(+)$1	1	176	200	10.3569
(((((.((((...))))))))).)	chr7:1889383-1889623(-)$1	1	29	53	9.8091
((((((((......))))..))))	chr12:123997898-123998194(-)$1	1	35	59	9.5595
))))).))))....))))...)))	chr17:75212399-75212674(+)$1	1	218	242	9.3672
.(((.(.(((....))).).))).	chr17:75211637-75211875(+)$1	1	45	69	9.5025
.(((((.(((....))).))))..	chr3:183353942-183354188(+)$1	1	20	44	7.7902
.((((.((((....)))))))).)	chr22:50016293-50016538(-)$1	1	157	181	10.7787
(((...((((....))))))))).	chr22:20067968-20068234(+)$1	1	180	204	10.6734
((((.(.((((...))))).))))	chr8:145149893-145150124(+)$1	1	57	81	8.4353
.(((..((((....))))..))).	chr4:78078310-78078634(+)$1	1	174	198	12.2788
(....(((((....)))))...))	chr2:159314183-159314428(+)$1	1	62	86	8.4095
((((((((......))))..))))	chr7:5569343-5569620(-)$1	1	169	193	10.2004
.(((((((((....)))).)))))	chr19:4038738-4038998(+)$1	1	97	121	10.3593
(((...((((......))))))))	chr4:140098113-140098347(-)$1	1	185	209	8.9342
(((((.((((......)))).)))	chr20:62330182-62330422(-)$1	1	42	66	8.8959
((((..((((....))))..))))	chr11:612025-612294(+)$1	1	206	230	11.9101
(((((.((((....)))).))...	chr17:75211536-75211796(+)$1	1	104	128	9.6400
(((....(((....))).))))).	chr11:2153979-2154238(-)$1	1	74	98	8.2641
((...(((((...)))))...)))	chr10:43891997-43892284(-)$1	1	133	157	8.5470
((((((((((....))))..).))	chr1:12656086-12656359(-)$1	1	6	30	10.8274
.((((.((((....)))))))).)	chr17:62501964-62502237(-)$1	1	2	26	10.8333
(((((.((((....))))...)).	chr17:7387947-7388219(+)$1	1	146	170	11.3087
(((((.((((....)))).)))))	chr22:20004133-20004419(-)$1	1	34	58	11.8205
(((...((((....))))...)))	chr19:16187264-16187547(+)$1	1	92	116	12.5516
((((...(((.....)))...)))	chr19:50985396-50985651(+)$1	1	192	216	8.1183
))))))).))....))))..))))	chr12:109124505-109124766(-)$1	1	232	256	7.8174
(((((..(((....)))..)))))	chr6:86352561-86352821(-)$1	1	233	257	9.6449
((.(..((((....))))).))))	chr6:3259155-3259417(+)$1	1	53	77	11.0800
.(.((.((((....)))).)))))	chr9:126030503-126030863(-)$1	1	305	329	10.4207
((((.((((.....))))..))))	chr2:54197770-54198043(-)$1	1	243	267	8.9010
((((..((((....)))).)))))	chr1:212458793-212459051(+)$1	1	226	250	12.0594
).(((.((((....)))).)))..	chr19:1881951-1882179(-)$1	1	128	152	8.7677
.(((((..(((...))))))))))	chr19:1104622-1104880(+)$1	1	55	79	7.5923
(((((.((((....))))))).))	chr5:176738850-176739091(-)$1	1	118	142	11.1550
(((((.(((......))).)))))	chr19:18547928-18548199(-)$1	1	37	61	8.3937
)(((..((((....)))).)))..	chr7:1577326-1577614(+)$1	1	149	173	9.9782
(.(((((((((...)))).)))))	chr11:61583857-61584097(-)$1	1	50	74	9.5335
((.((.((((...)))))).))))	chr11:2152161-2152373(-)$1	1	103	127	8.0837

#PSSM
e : 0.26	[ : 0.18	c : 0.14	f : 0.12	d : 0.12	b : 0.04	i : 0.02	" : 0.02	h : 0.02	: : 0.02	g : 0.02	a : 0.02	
e : 0.30	c : 0.24	d : 0.14	f : 0.10	b : 0.04	a : 0.04	i : 0.02	" : 0.02	h : 0.02	# : 0.02	: : 0.02	[ : 0.02	
c : 0.28	e : 0.28	d : 0.14	f : 0.06	" : 0.06	[ : 0.06	i : 0.02	! : 0.02	h : 0.02	# : 0.02	b : 0.02	
e : 0.24	c : 0.18	d : 0.16	" : 0.10	b : 0.08	f : 0.06	[ : 0.04	# : 0.04	i : 0.02	! : 0.02	h : 0.02	a : 0.02	
d : 0.20	e : 0.18	" : 0.12	[ : 0.10	! : 0.10	c : 0.08	b : 0.08	f : 0.06	# : 0.04	i : 0.02	
[ : 0.26	d : 0.18	! : 0.14	e : 0.12	" : 0.08	a : 0.06	b : 0.04	] : 0.04	f : 0.02	i : 0.02	# : 0.02	
d : 0.65	e : 0.10	[ : 0.08	! : 0.06	b : 0.04	# : 0.02	" : 0.02	c : 0.02	
d : 0.65	c : 0.16	e : 0.08	[ : 0.06	] : 0.02	! : 0.02	
d : 0.55	c : 0.22	e : 0.08	o : 0.08	b : 0.04	[ : 0.02	
d : 0.53	c : 0.20	o : 0.10	e : 0.08	b : 0.04	a : 0.02	n : 0.02	
m : 0.57	o : 0.14	c : 0.06	4 : 0.06	l : 0.06	d : 0.04	n : 0.04	e : 0.02	
m : 0.57	l : 0.18	o : 0.14	4 : 0.06	n : 0.04	
m : 0.57	l : 0.18	o : 0.14	4 : 0.06	n : 0.04	
m : 0.57	o : 0.14	l : 0.12	4 : 0.06	d : 0.04	n : 0.04	e : 0.02	
d : 0.61	c : 0.18	e : 0.08	o : 0.06	a : 0.02	b : 0.02	n : 0.02	
d : 0.61	c : 0.22	e : 0.08	o : 0.04	] : 0.02	b : 0.02	
d : 0.67	c : 0.22	e : 0.08	b : 0.02	
d : 0.63	e : 0.12	] : 0.08	2 : 0.04	b : 0.04	3 : 0.04	c : 0.04	
2 : 0.22	3 : 0.18	] : 0.18	e : 0.14	d : 0.12	a : 0.06	b : 0.04	: : 0.02	c : 0.02	
3 : 0.20	e : 0.20	2 : 0.18	d : 0.12	] : 0.10	c : 0.08	b : 0.06	i : 0.04	
e : 0.26	d : 0.18	c : 0.16	3 : 0.16	b : 0.06	i : 0.04	] : 0.04	f : 0.04	h : 0.02	a : 0.02	
e : 0.30	c : 0.24	d : 0.18	i : 0.06	b : 0.04	] : 0.04	f : 0.04	h : 0.02	3 : 0.02	4 : 0.02	a : 0.02	
e : 0.28	c : 0.18	d : 0.16	] : 0.10	f : 0.08	i : 0.06	: : 0.04	2 : 0.02	h : 0.02	4 : 0.02	b : 0.02	
e : 0.28	d : 0.16	c : 0.10	f : 0.10	] : 0.08	: : 0.08	i : 0.06	2 : 0.04	b : 0.02	h : 0.02	4 : 0.02	a : 0.02	

#score	465.91930444215717
#seq	49
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_CDS_m1_run2.txt

#BEAR
ee!!ddddtttttttttttdddd22eeee	chr12:46320559-46320862(-)$1	303	211	240	19.6613
(((((cccuuuuuuuuuuuuccc000000	chr12:104333214-104333477(+)$1	263	51	80	17.0983
dddd!!bbvvvvvvvvvvvvvbb22dddd	chr2:232325097-232325355(-)$1	258	113	142	18.3468
ccc!!cccwwwwwwwwwwwwwwccc22cc	chr3:37366209-37366475(+)$1	266	7	36	20.1851
!!ffffffrrrrrrrrrffffffeeeee]	chr2:152321442-152321689(+)$1	247	74	103	11.0364
[ccc[ccctttttttttttcccccc]ccc	chr11:5424207-5424473(-)$1	266	70	99	21.2406
gggggggvvvvvvvvvvvvvggggggg33	chr11:62285839-62286158(-)$1	319	217	246	20.0692
ddd!!ddddssssssssssdddd22dddd	chr3:160141303-160141538(+)$1	235	1	30	15.4051
ff[ffffffssssssssssffffffffff	chr1:39797400-39797686(+)$1	286	99	128	14.2869
dddd[ddddssssssssssdddd333ddd	chr2:55253828-55254060(-)$1	232	119	148	16.0229
dd!!eeeeesssssssssseeeee22ddd	chr11:62294486-62294761(-)$1	275	174	203	15.4173
========ssssssssss===========	chr9:100700249-100700509(-)$1	260	13	42	16.0323
"bb!!cccssssssssssccc]bb22ccc	chr3:47161680-47161972(-)$1	292	219	248	16.2190
%%%eeeeettttttttttteeeee>>>>>	chr2:55253544-55253784(-)$1	240	57	86	18.7049
cc"""ccctttttttttttccc4444ccc	chr11:62292333-62292590(-)$1	257	91	120	21.7976
ddbb[bbvvvvvvvvvvvvvbb]bb22dd	chr2:152319890-152320149(+)$1	259	64	93	18.5916
^^^^^^^^^^^^^^^^^^^^eeeee333e	chr3:37366895-37367145(+)$1	250	59	88	12.9844
$$$$$cccssssssssssccc22gggggg	chr2:152320603-152320891(+)$1	288	93	122	15.6811
###eeeeesssssssssseeeee4444dd	chr7:72891847-72892162(-)$1	315	229	258	16.1501
[ffffffvvvvvvvvvvvvvffffff22e	chr11:62285119-62285382(-)$1	263	104	133	19.3179
:ccc[bbvvvvvvvvvvvvvbb]ccc:::	chr1:39797676-39797949(+)$1	273	45	74	16.5350
cc!!bb!!bbrrrrrrrrrbb22bb22cc	chr11:62294333-62294601(-)$1	268	237	266	10.5550
dddd[ddddssssssssssdddd333ddd	chr2:55253888-55254152(-)$1	264	211	240	16.0229
!!ddddvvvvvvvvvvvvvddddffffff	chr11:62285644-62285890(-)$1	246	104	133	18.6615
cccc[cccvvvvvvvvvvvvvccc]ccc2	chr4:104079676-104079954(-)$1	278	167	196	20.2744
d####ddddrrrrrrrrrddddddddccc	chr11:62297244-62297504(-)$1	260	153	182	12.1277
:gggggggssssssssssgggggggccc!	chr3:37368134-37368410(+)$1	276	182	211	14.3712
!!a[ddddvvvvvvvvvvvvvdddd]a22	chr1:214813635-214813882(+)$1	247	52	81	19.6980
:ffffffvvvvvvvvvvvvvffffff:::	chr1:214819808-214820064(+)$1	256	104	133	16.4762
c"""ddddtttttttttttdddd333ccc	chr11:62288128-62288380(-)$1	252	25	54	21.4842
:gggggggtttttttttttggggggg:FF	chr11:62286572-62286828(-)$1	256	56	85	17.8603
======wwwwwwwwwwwwww=========	chr11:62300887-62301156(-)$1	269	62	91	19.8761
&&fffffftttttttttttffffff9999	chr11:62292063-62292331(-)$1	268	158	187	17.3481
ffff[cccrrrrrrrrrcccffffff333	chr11:62284728-62285015(-)$1	287	131	160	12.5735

#otherMatches

#Seq PSSM
UGUAGAACAAAAAGUAAGAGUUCAUCAUU	chr12:46320559-46320862(-)$1	303	211	240	19.6613
CAAAUACUAUAAUAACUUCAGGUUGAAAA	chr12:104333214-104333477(+)$1	263	51	80	17.0983
AGGAAAUGGCCAAACAGAAAGCAGCUCCU	chr2:232325097-232325355(-)$1	258	113	142	18.3468
CCAAAUUUAAAAACCAAGAAAAAAAGAUG	chr3:37366209-37366475(+)$1	266	7	36	20.1851
CUUCUGGAAUAGUAAACUUUAGAGAGGAA	chr2:152321442-152321689(+)$1	247	74	103	11.0364
UCCCACAAGAUAGAUAAGAUUGGGGUGCA	chr11:5424207-5424473(-)$1	266	70	99	21.2406
UGCAUCUGUUCCCAGCAUGAAGGUGCAUG	chr11:62285839-62286158(-)$1	319	217	246	20.0692
UCGCCAAGCUUUUUAUUUUGCUUUACGAG	chr3:160141303-160141538(+)$1	235	1	30	15.4051
GCAUUUUCCGUGCAGUUCAGGAAGGGCUA	chr1:39797400-39797686(+)$1	286	99	128	14.2869
ACUAAUCACGAAAAAGAUAGUGAGAGUAG	chr2:55253828-55254060(-)$1	232	119	148	16.0229
CAAAUUGAAAGGCCCUAAGUUCAAGAUGC	chr11:62294486-62294761(-)$1	275	174	203	15.4173
AUGUUUUUGAUAUUUUAAAAAAGCAUCUA	chr9:100700249-100700509(-)$1	260	13	42	16.0323
AGCGAUGGAAGGAAUGUGCCAAGCAAGGG	chr3:47161680-47161972(-)$1	292	219	248	16.2190
AAAUAGUAACAGAGAAGAAUACUAGCACC	chr2:55253544-55253784(-)$1	240	57	86	18.7049
CAAAGUGGAUAUUAAUGCCCCAGAUGUGG	chr11:62292333-62292590(-)$1	257	91	120	21.7976
AUCUGAGCCGGAGAAAAAUACUGAGGAAU	chr2:152319890-152320149(+)$1	259	64	93	18.5916
AAAAAAGUAACAAAAGCCUAGAGGACAAG	chr3:37366895-37367145(+)$1	250	59	88	12.9844
GAUAGUUCGGAGGCAAAAGAAGAAGGUUC	chr2:152320603-152320891(+)$1	288	93	122	15.6811
UAUUCUGGGCUACUUUUACCAGAUGCUCA	chr7:72891847-72892162(-)$1	315	229	258	16.1501
UGCUCCUGAUAUCAGUGUGAAGGGGCCUG	chr11:62285119-62285382(-)$1	263	104	133	19.3179
GGCUAACAAUAGAUGAAGCAGUGAGCAAU	chr1:39797676-39797949(+)$1	273	45	74	16.5350
AAGAUGCCCAAGAUGAAAAUGCCCAAGUU	chr11:62294333-62294601(-)$1	268	237	266	10.5550
ACUAAUCACGAAAAAGAUAGUGAGAGUAG	chr2:55253888-55254152(-)$1	264	211	240	16.0229
CAAGCCUGCAGGGAGAUCUGGCUGUCUCU	chr11:62285644-62285890(-)$1	246	104	133	18.6615
ACGAUACUGUUAACAUGGUAAGGUUUUGA	chr4:104079676-104079954(-)$1	278	167	196	20.2744
UAAAAAUGCCCAAGUUCAGCAUGCCUGGC	chr11:62297244-62297504(-)$1	260	153	182	12.1277
AAAUUGCUGCCAUUAAGAAGCAGUUGUUA	chr3:37368134-37368410(+)$1	276	182	211	14.3712
GAUGGACAGAGAAAACCUAAGUGUCGAGA	chr1:214813635-214813882(+)$1	247	52	81	19.6980
CUUAAGGGUAGAGUGGAGAACCUUGAAAG	chr1:214819808-214820064(+)$1	256	104	133	16.4762
GUACAUUUCAAAAGCCCACAAAUCUCCAU	chr11:62288128-62288380(-)$1	252	25	54	21.4842
ACAGGGAUUUGACCUGAAUGUUCCUGGGG	chr11:62286572-62286828(-)$1	256	56	85	17.8603
GGACUUGGGUGGCAGAGGAGGGGUCCAAG	chr11:62300887-62301156(-)$1	269	62	91	19.8761
UUUCACUUGCAAAUGUAGAAGGUGAUUUG	chr11:62292063-62292331(-)$1	268	158	187	17.3481
UCUGGCCGUGAGCUGGUUGGCAGAGAAAU	chr11:62284728-62285015(-)$1	287	131	160	12.5735

#DB
((..((((...........))))..))))	chr12:46320559-46320862(-)$1	1	211	240	19.6613
.....(((............)))......	chr12:104333214-104333477(+)$1	1	51	80	17.0983
((((..((.............))..))))	chr2:232325097-232325355(-)$1	1	113	142	18.3468
(((..(((..............)))..))	chr3:37366209-37366475(+)$1	1	7	36	20.1851
..((((((.........))))))))))).	chr2:152321442-152321689(+)$1	1	74	103	11.0364
.(((.(((...........)))))).)))	chr11:5424207-5424473(-)$1	1	70	99	21.2406
(((((((.............)))))))..	chr11:62285839-62286158(-)$1	1	217	246	20.0692
(((..((((..........))))..))))	chr3:160141303-160141538(+)$1	1	1	30	15.4051
((.((((((..........))))))))))	chr1:39797400-39797686(+)$1	1	99	128	14.2869
((((.((((..........))))...)))	chr2:55253828-55254060(-)$1	1	119	148	16.0229
((..(((((..........)))))..)))	chr11:62294486-62294761(-)$1	1	174	203	15.4173
((((((((..........)))))))))))	chr9:100700249-100700509(-)$1	1	13	42	16.0323
.((..(((..........))).))..)))	chr3:47161680-47161972(-)$1	1	219	248	16.2190
...(((((...........))))).....	chr2:55253544-55253784(-)$1	1	57	86	18.7049
((...(((...........)))....)))	chr11:62292333-62292590(-)$1	1	91	120	21.7976
((((.((.............)).))..))	chr2:152319890-152320149(+)$1	1	64	93	18.5916
....................)))))...)	chr3:37366895-37367145(+)$1	1	59	88	12.9844
.....(((..........)))..))))))	chr2:152320603-152320891(+)$1	1	93	122	15.6811
...(((((..........)))))....))	chr7:72891847-72892162(-)$1	1	229	258	16.1501
.((((((.............))))))..)	chr11:62285119-62285382(-)$1	1	104	133	19.3179
.(((.((.............)).)))...	chr1:39797676-39797949(+)$1	1	45	74	16.5350
((..((..((.........))..))..))	chr11:62294333-62294601(-)$1	1	237	266	10.5550
((((.((((..........))))...)))	chr2:55253888-55254152(-)$1	1	211	240	16.0229
..((((.............))))))))))	chr11:62285644-62285890(-)$1	1	104	133	18.6615
((((.(((.............))).))).	chr4:104079676-104079954(-)$1	1	167	196	20.2744
(....((((.........)))))))))))	chr11:62297244-62297504(-)$1	1	153	182	12.1277
.(((((((..........)))))))(((.	chr3:37368134-37368410(+)$1	1	182	211	14.3712
..(.((((.............)))).)..	chr1:214813635-214813882(+)$1	1	52	81	19.6980
.((((((.............))))))...	chr1:214819808-214820064(+)$1	1	104	133	16.4762
(...((((...........))))...)))	chr11:62288128-62288380(-)$1	1	25	54	21.4842
.(((((((...........))))))).((	chr11:62286572-62286828(-)$1	1	56	85	17.8603
((((((..............)))))))))	chr11:62300887-62301156(-)$1	1	62	91	19.8761
..((((((...........))))))....	chr11:62292063-62292331(-)$1	1	158	187	17.3481
((((.(((.........)))))))))...	chr11:62284728-62285015(-)$1	1	131	160	12.5735

#PSSM
d : 0.20	c : 0.14	: : 0.11	! : 0.08	[ : 0.05	f : 0.05	= : 0.05	e : 0.02	( : 0.02	g : 0.02	" : 0.02	% : 0.02	^ : 0.02	$ : 0.02	# : 0.02	& : 0.02	
d : 0.17	c : 0.17	f : 0.11	! : 0.08	g : 0.08	= : 0.05	# : 0.05	e : 0.02	( : 0.02	b : 0.02	% : 0.02	^ : 0.02	$ : 0.02	" : 0.02	& : 0.02	
d : 0.14	f : 0.14	c : 0.11	! : 0.08	g : 0.08	= : 0.05	b : 0.05	" : 0.05	# : 0.05	( : 0.02	[ : 0.02	% : 0.02	^ : 0.02	$ : 0.02	a : 0.02	
! : 0.17	f : 0.17	d : 0.11	c : 0.08	g : 0.08	= : 0.05	e : 0.05	" : 0.05	( : 0.02	b : 0.02	^ : 0.02	$ : 0.02	# : 0.02	[ : 0.02	
[ : 0.20	f : 0.14	d : 0.11	! : 0.11	g : 0.08	e : 0.08	= : 0.05	( : 0.02	" : 0.02	^ : 0.02	$ : 0.02	b : 0.02	# : 0.02	
d : 0.23	c : 0.23	f : 0.14	g : 0.08	e : 0.08	b : 0.08	= : 0.05	! : 0.02	^ : 0.02	
c : 0.23	d : 0.20	f : 0.14	b : 0.08	g : 0.08	e : 0.08	= : 0.02	^ : 0.02	! : 0.02	v : 0.02	w : 0.02	
c : 0.23	d : 0.20	v : 0.17	f : 0.08	e : 0.08	g : 0.05	b : 0.02	= : 0.02	^ : 0.02	! : 0.02	w : 0.02	
v : 0.26	t : 0.20	s : 0.14	d : 0.11	w : 0.05	r : 0.05	u : 0.02	f : 0.02	e : 0.02	^ : 0.02	b : 0.02	
s : 0.29	v : 0.26	t : 0.20	r : 0.08	w : 0.05	u : 0.02	^ : 0.02	b : 0.02	
s : 0.29	v : 0.26	t : 0.20	r : 0.11	w : 0.05	u : 0.02	^ : 0.02	
s : 0.29	v : 0.26	t : 0.20	r : 0.11	w : 0.05	u : 0.02	^ : 0.02	
s : 0.29	v : 0.26	t : 0.20	r : 0.11	w : 0.05	u : 0.02	^ : 0.02	
s : 0.29	v : 0.26	t : 0.20	r : 0.11	w : 0.05	u : 0.02	^ : 0.02	
s : 0.29	v : 0.26	t : 0.20	r : 0.11	w : 0.05	u : 0.02	^ : 0.02	
s : 0.29	v : 0.26	t : 0.20	r : 0.11	w : 0.05	u : 0.02	^ : 0.02	
s : 0.29	v : 0.26	t : 0.20	r : 0.11	w : 0.05	u : 0.02	^ : 0.02	
s : 0.29	v : 0.26	t : 0.20	w : 0.05	r : 0.05	u : 0.02	f : 0.02	^ : 0.02	c : 0.02	
v : 0.26	t : 0.20	s : 0.14	c : 0.08	w : 0.05	u : 0.02	f : 0.02	= : 0.02	^ : 0.02	e : 0.02	r : 0.02	d : 0.02	g : 0.02	
v : 0.23	d : 0.20	c : 0.14	f : 0.08	e : 0.08	w : 0.05	g : 0.05	u : 0.02	= : 0.02	^ : 0.02	b : 0.02	
d : 0.20	f : 0.17	c : 0.14	e : 0.11	v : 0.08	g : 0.08	b : 0.08	= : 0.05	w : 0.02	
d : 0.23	f : 0.17	c : 0.11	e : 0.11	b : 0.08	g : 0.08	= : 0.05	2 : 0.05	w : 0.02	] : 0.02	
d : 0.23	f : 0.17	c : 0.11	e : 0.11	g : 0.08	b : 0.05	= : 0.05	] : 0.05	2 : 0.05	4 : 0.02	
f : 0.17	c : 0.11	e : 0.11	g : 0.11	2 : 0.08	3 : 0.08	b : 0.08	= : 0.05	4 : 0.05	d : 0.05	0 : 0.02	
f : 0.17	2 : 0.14	g : 0.11	c : 0.08	3 : 0.08	e : 0.05	= : 0.05	4 : 0.05	b : 0.05	d : 0.05	0 : 0.02	> : 0.02	] : 0.02	
2 : 0.14	f : 0.14	3 : 0.11	d : 0.08	g : 0.08	c : 0.08	e : 0.05	] : 0.05	= : 0.05	4 : 0.05	0 : 0.02	> : 0.02	9 : 0.02	
c : 0.20	d : 0.14	2 : 0.11	: : 0.08	e : 0.05	g : 0.05	f : 0.05	= : 0.05	3 : 0.05	0 : 0.02	> : 0.02	4 : 0.02	a : 0.02	9 : 0.02	
c : 0.26	d : 0.20	3 : 0.08	e : 0.05	f : 0.05	= : 0.05	2 : 0.05	: : 0.05	0 : 0.02	> : 0.02	g : 0.02	F : 0.02	9 : 0.02	
d : 0.20	c : 0.20	e : 0.08	3 : 0.05	f : 0.05	= : 0.05	: : 0.05	2 : 0.05	0 : 0.02	] : 0.02	> : 0.02	g : 0.02	! : 0.02	F : 0.02	9 : 0.02	

#score	578.1146754700852
#seq	34
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_UTR_m2_run2.txt

#BEAR
geeeeecccssssssssssccc]eeeee	chr17:29632280-29632538(+)$1	258	121	149	16.3575
"""eeeeewwwwwwwwwwwwwweeeee0	chr16:2028578-2028786(+)$1	208	120	148	19.7461
ffff[eeeeerrrrrrrrreeeeeffff	chr12:133404892-133405105(-)$1	213	136	164	12.8335
b"""eeeeettttttttttteeeee333	chr1:155657635-155657891(-)$1	256	204	232	19.2848
[ccc!!ddddrrrrrrrrrdddd333cc	chr1:20236791-20237008(+)$1	217	152	180	13.3023
fffff!!cccrrrrrrrrrccc]fffff	chr16:81031855-81032066(-)$1	211	85	113	13.5544
"""cccwwwwwwwwwwwwwwccc333gg	chr1:20237098-20237344(+)$1	246	66	94	19.7922
[eeeeewwwwwwwwwwwwwweeeee]cc	chr11:14358563-14358806(-)$1	243	170	198	19.9749
ea[ffffffrrrrrrrrrffffff]a]e	chr12:133404759-133405024(-)$1	265	144	172	11.5704
eeee[axxxxxxxxxxxxxxxa]eeeee	chr15:28508123-28508384(-)$1	261	97	125	16.4513
!!bbeeeeesssssssssseeeee]bb2	chr1:47697282-47697540(-)$1	258	147	175	14.6038
[ccc!!cccxxxxxxxxxxxxxxxccc2	chr1:20236103-20236366(+)$1	263	47	75	16.0364
eee[a[ddddssssssssssdddd]a]e	chr20:23356303-23356553(-)$1	250	72	100	14.4271
""dddd[bbssssssssssbbdddd444	chr12:72234774-72235014(+)$1	240	117	145	14.4645
feeeeecccssssssssssccc]eeeee	chr17:29632338-29632613(+)$1	275	63	91	16.2590
iccc[ddddssssssssssdddd22ccc	chr8:42396142-42396409(-)$1	267	201	229	14.8161
ff####bbuuuuuuuuuuuubb22ffff	chr8:102217052-102217370(-)$1	318	235	263	18.5815
ggg"""cccssssssssssccc]ggggg	chr2:169721822-169722137(-)$1	315	58	86	16.2434
[eeeeexxxxxxxxxxxxxxxeeeee]d	chr1:20235025-20235264(+)$1	239	78	106	16.5384
gggggggcccrrrrrrrrrccc]ggggg	chr20:23356915-23357169(-)$1	254	86	114	14.0333
ffff[ddddssssssssssdddd22fff	chr4:1385305-1385575(+)$1	270	9	37	14.5436
geeeeecccssssssssssccc]eeeee	chr17:29632159-29632448(+)$1	289	242	270	16.3575
c[bb[bbvvvvvvvvvvvvvbb]bb]cc	chr10:103578011-103578264(-)$1	253	59	87	17.6920
::eeeeewwwwwwwwwwwwwweeeee::	chr5:112350348-112350588(+)$1	240	174	202	16.0600
[ccc!!ddddrrrrrrrrrdddd333cc	chr1:20236808-20237048(+)$1	240	135	163	13.3023
[ffffffbbtttttttttttbb]fffff	chr2:61763616-61763853(-)$1	237	119	147	18.4457
hhhhhhhhvvvvvvvvvvvvvhhhhhhh	chr3:41241625-41241872(+)$1	247	52	80	16.7889
$eeeeecccvvvvvvvvvvvvvccc]ee	chr1:20236351-20236596(+)$1	245	123	151	19.1712
cccffffffssssssssssffffffccc	chr11:3010218-3010476(-)$1	258	112	140	14.1679
!!a[ddddwwwwwwwwwwwwwwdddd]a	chr20:23357353-23357589(-)$1	236	129	157	19.2672
"""eeeeewwwwwwwwwwwwwweeeee0	chr16:2028586-2028798(+)$1	212	112	140	19.7461
cciiiiiiiiirrrrrrrrriiiiiiii	chr1:20235102-20235313(+)$1	211	29	57	11.7258
dd!!eeeeerrrrrrrrreeeeedddd]	chr11:3011271-3011531(-)$1	260	216	244	12.1557
[bb!!cccwwwwwwwwwwwwwwccc]bb	chr7:155571386-155571628(+)$1	242	85	113	19.0313
fffff!!cccrrrrrrrrrccc]fffff	chr16:81031841-81032055(-)$1	214	74	102	13.5544
dd!!eeeeerrrrrrrrreeeeedddd]	chr11:3011162-3011402(-)$1	240	87	115	12.1557
iiiiiiiiivvvvvvvvvvvvviiiiii	chr16:1360089-1360339(+)$1	250	199	227	18.9235
ffff!!awwwwwwwwwwwwwwa22ffff	chr11:3010357-3010617(-)$1	260	230	258	19.6052
=====!!avvvvvvvvvvvvva22====	chrX:41193696-41193954(+)$1	258	157	185	19.9560
ccccccvvvvvvvvvvvvvccc]cccff	chr8:109254391-109254620(-)$1	229	142	170	18.2505
eeee[ddddtttttttttttdddd22ee	chr11:3011845-3012071(-)$1	226	2	30	18.3479
"dddd[bbuuuuuuuuuuuubbdddd33	chr7:104752577-104752880(-)$1	303	48	76	18.7820
:eeeee[bbtttttttttttbb]eeeee	chr4:1386696-1386961(+)$1	265	120	148	18.1221
!!gggggggtttttttttttggggggg2	chr1:228270929-228271165(+)$1	236	24	52	19.2043
ffffff[bbtttttttttttbbffffff	chr3:17741296-17741607(-)$1	311	39	67	17.9365
[eeeeewwwwwwwwwwwwwweeeee333	chr4:1386354-1386645(+)$1	291	84	112	20.1883
bbgggggggtttttttttttggggggg]	chr11:3011088-3011328(-)$1	240	109	137	18.5354
##gggggggssssssssssggggggg33	chr1:27022737-27022991(+)$1	254	129	157	15.4213
"dddd!!cccrrrrrrrrrccc4444dd	chr7:923631-923877(+)$1	246	137	165	13.1957
hhhhhhhhvvvvvvvvvvvvvhhhhhhh	chr3:41241477-41241716(+)$1	239	200	228	16.7889
dddd[eeeeesssssssssseeeee]dd	chr1:20235995-20236245(+)$1	250	28	56	14.4302

#otherMatches

#Seq PSSM
CUUUGGCAGGUGAUAUUGAUUGUCCAGA	chr17:29632280-29632538(+)$1	258	121	149	16.3575
CUCUCCAGUCCAUCCUGAACCCCUGGAA	chr16:2028578-2028786(+)$1	208	120	148	19.7461
GGCCGACUUGUCUUCAUUCCAGGUGGCC	chr12:133404892-133405105(-)$1	213	136	164	12.8335
CAGGCGGGGUGAAGGGGUGUCCCUGACA	chr1:155657635-155657891(-)$1	256	204	232	19.2848
AGGUAGAUGUAUUAAAGCAGCAUAGAAC	chr1:20236791-20237008(+)$1	217	152	180	13.3023
uuauuuucuguuuuuuuuucagcaguag	chr16:81031855-81032066(-)$1	211	85	113	13.5544
AAUGCCAGUUUGAUUCUGAGGGCUUGGG	chr1:20237098-20237344(+)$1	246	66	94	19.7922
guuuucuuugaucagcaccugaaagaua	chr11:14358563-14358806(-)$1	243	170	198	19.9749
GGUCCUGGGUAUUGUGGGUCUGGGUCAC	chr12:133404759-133405024(-)$1	265	144	172	11.5704
CUAUGGGAAAUUGGGCAGAGGUGGUAGU	chr15:28508123-28508384(-)$1	261	97	125	16.4513
CUUCUGCGUUUUCUUCGUUGCGUACGAU	chr1:47697282-47697540(-)$1	258	147	175	14.6038
AUUGUAUGCCAGAAAUUCAGAUUAGCAG	chr1:20236103-20236366(+)$1	263	47	75	16.0364
CACGAGGACUUGCAGGCUAUAGUUAUGG	chr20:23356303-23356553(-)$1	250	72	100	14.4271
AUAUACUGCUUGACUUACUGCGUAUUUG	chr12:72234774-72235014(+)$1	240	117	145	14.4645
CUUUGGCAGGUGAUAUUGAUUGUCCAGA	chr17:29632338-29632613(+)$1	275	63	91	16.2590
GCAUAGAGUCCCUUUUCAUAUUCACGUG	chr8:42396142-42396409(-)$1	267	201	229	14.8161
UUAAAAGCUAGGGUCAGGAUGUGGAGCG	chr8:102217052-102217370(-)$1	318	235	263	18.5815
ccugucuugugccaguuuucaaagggaa	chr2:169721822-169722137(-)$1	315	58	86	16.2434
AGAGGAGUCUAAAGAAUUAUGUUUUUAU	chr1:20235025-20235264(+)$1	239	78	106	16.5384
AUGUAUGUAAUUUUCCUGUUUAUUGUAC	chr20:23356915-23357169(-)$1	254	86	114	14.0333
auuaugacauguccuucuuugucuuuag	chr4:1385305-1385575(+)$1	270	9	37	14.5436
CUUUGGCAGGUGAUAUUGAUUGUCCAGA	chr17:29632159-29632448(+)$1	289	242	270	16.3575
CAGUGCGGAUAAACAGGAAGCGGGCGGU	chr10:103578011-103578264(-)$1	253	59	87	17.6920
UCUCUGCUUAUAAAUGUUAUUGUAGAAA	chr5:112350348-112350588(+)$1	240	174	202	16.0600
AGGUAGAUGUAUUAAAGCAGCAUAGAAC	chr1:20236808-20237048(+)$1	240	135	163	13.3023
CGAUUGCCCACACAACCUAAGGAGCAGU	chr2:61763616-61763853(-)$1	237	119	147	18.4457
UCUUAAGAUUUCCUCUUUCAUUCUUAAG	chr3:41241625-41241872(+)$1	247	52	80	16.7889
CGGGUACAUGCAUCCAACUUCAGUGAUA	chr1:20236351-20236596(+)$1	245	123	151	19.1712
CCUGAGGUAAGCAAAUUUAUGCCUCCCG	chr11:3010218-3010476(-)$1	258	112	140	14.1679
UGCAUGGCAAAAAUUUAGAAUAGCCAGG	chr20:23357353-23357589(-)$1	236	129	157	19.2672
CUCUCCAGUCCAUCCUGAACCCCUGGAA	chr16:2028586-2028798(+)$1	212	112	140	19.7461
AGGAGAAGCCUGGAAGAAUAAGGUUUUU	chr1:20235102-20235313(+)$1	211	29	57	11.7258
UGUUUUUCAAAAUGAAUAUGGAGUAGUC	chr11:3011271-3011531(-)$1	260	216	244	12.1557
guuuuguauuucuuuguuAUUUUAUUGG	chr7:155571386-155571628(+)$1	242	85	113	19.0313
uuauuuucuguuuuuuuuucagcaguag	chr16:81031841-81032055(-)$1	214	74	102	13.5544
UGUUUUUCAAAAUGAAUAUGGAGUAGUC	chr11:3011162-3011402(-)$1	240	87	115	12.1557
GGCGCUUGCUGGGGCCCUGAACGUGAGC	chr16:1360089-1360339(+)$1	250	199	227	18.9235
UCAGCUGAAUUUUUGUGGGACCUCCUGA	chr11:3010357-3010617(-)$1	260	230	258	19.6052
AUCCCGACUGAUUAGUGACCUGGGGGGG	chrX:41193696-41193954(+)$1	258	157	185	19.9560
GGCGUGGGUUUUAUUUAUACACAGCCUU	chr8:109254391-109254620(-)$1	229	142	170	18.2505
cgcaccagggacucuuucagccuguuug	chr11:3011845-3012071(-)$1	226	2	30	18.3479
UGCCGUGCUGUUCAGACUUUGUUGGUUA	chr7:104752577-104752880(-)$1	303	48	76	18.7820
uguccauguucucuucccccacuuggac	chr4:1386696-1386961(+)$1	265	120	148	18.1221
CCGCCUCGGGGACCGGGAAACUGAGGCU	chr1:228270929-228271165(+)$1	236	24	52	19.2043
GGUGGGGCUUUAGAACACAUAGCUUGCC	chr3:17741296-17741607(-)$1	311	39	67	17.9365
ucagucucuuuuuagcuucugacuguuu	chr4:1386354-1386645(+)$1	291	84	112	20.1883
UGGUAAACUGAAUUCUGAAAAGUUUACA	chr11:3011088-3011328(-)$1	240	109	137	18.5354
UCUCUCCGCGGACGAGACAGCGGGGAUC	chr1:27022737-27022991(+)$1	254	129	157	15.4213
AGAUAGAAGCAUCCAGAACGCUGUAGUA	chr7:923631-923877(+)$1	246	137	165	13.1957
UCUUAAGAUUUCCUCUUUCAUUCUUAAG	chr3:41241477-41241716(+)$1	239	200	228	16.7889
UCUAUGGUUGUCUUGGUUUUCAACUCUG	chr1:20235995-20236245(+)$1	250	28	56	14.4302

#DB
(((((((((..........))).)))))	chr17:29632280-29632538(+)$1	1	121	149	16.3575
...(((((..............))))).	chr16:2028578-2028786(+)$1	1	120	148	19.7461
((((.(((((.........)))))))))	chr12:133404892-133405105(-)$1	1	136	164	12.8335
(...(((((...........)))))...	chr1:155657635-155657891(-)$1	1	204	232	19.2848
.(((..((((.........))))...))	chr1:20236791-20237008(+)$1	1	152	180	13.3023
(((((..(((.........))).)))))	chr16:81031855-81032066(-)$1	1	85	113	13.5544
...(((..............)))...))	chr1:20237098-20237344(+)$1	1	66	94	19.7922
.(((((..............))))).))	chr11:14358563-14358806(-)$1	1	170	198	19.9749
((.((((((.........)))))).).)	chr12:133404759-133405024(-)$1	1	144	172	11.5704
((((.(...............).)))))	chr15:28508123-28508384(-)$1	1	97	125	16.4513
..(((((((..........))))).)).	chr1:47697282-47697540(-)$1	1	147	175	14.6038
.(((..(((...............))).	chr1:20236103-20236366(+)$1	1	47	75	16.0364
(((.(.((((..........)))).).)	chr20:23356303-23356553(-)$1	1	72	100	14.4271
..((((.((..........))))))...	chr12:72234774-72235014(+)$1	1	117	145	14.4645
(((((((((..........))).)))))	chr17:29632338-29632613(+)$1	1	63	91	16.2590
((((.((((..........))))..)))	chr8:42396142-42396409(-)$1	1	201	229	14.8161
((....((............))..))))	chr8:102217052-102217370(-)$1	1	235	263	18.5815
(((...(((..........))).)))))	chr2:169721822-169722137(-)$1	1	58	86	16.2434
.(((((...............))))).)	chr1:20235025-20235264(+)$1	1	78	106	16.5384
((((((((((.........))).)))))	chr20:23356915-23357169(-)$1	1	86	114	14.0333
((((.((((..........))))..)))	chr4:1385305-1385575(+)$1	1	9	37	14.5436
(((((((((..........))).)))))	chr17:29632159-29632448(+)$1	1	242	270	16.3575
(.((.((.............)).)).))	chr10:103578011-103578264(-)$1	1	59	87	17.6920
..(((((..............)))))..	chr5:112350348-112350588(+)$1	1	174	202	16.0600
.(((..((((.........))))...))	chr1:20236808-20237048(+)$1	1	135	163	13.3023
.((((((((...........)).)))))	chr2:61763616-61763853(-)$1	1	119	147	18.4457
((((((((.............)))))))	chr3:41241625-41241872(+)$1	1	52	80	16.7889
.((((((((.............))).))	chr1:20236351-20236596(+)$1	1	123	151	19.1712
)))((((((..........))))))(((	chr11:3010218-3010476(-)$1	1	112	140	14.1679
..(.((((..............)))).)	chr20:23357353-23357589(-)$1	1	129	157	19.2672
...(((((..............))))).	chr16:2028586-2028798(+)$1	1	112	140	19.7461
))(((((((((.........))))))))	chr1:20235102-20235313(+)$1	1	29	57	11.7258
((..(((((.........))))))))).	chr11:3011271-3011531(-)$1	1	216	244	12.1557
.((..(((..............))).))	chr7:155571386-155571628(+)$1	1	85	113	19.0313
(((((..(((.........))).)))))	chr16:81031841-81032055(-)$1	1	74	102	13.5544
((..(((((.........))))))))).	chr11:3011162-3011402(-)$1	1	87	115	12.1557
(((((((((.............))))))	chr16:1360089-1360339(+)$1	1	199	227	18.9235
((((..(..............)..))))	chr11:3010357-3010617(-)$1	1	230	258	19.6052
(((((..(.............)..))))	chrX:41193696-41193954(+)$1	1	157	185	19.9560
((((((.............))).)))((	chr8:109254391-109254620(-)$1	1	142	170	18.2505
((((.((((...........))))..))	chr11:3011845-3012071(-)$1	1	2	30	18.3479
.((((.((............))))))..	chr7:104752577-104752880(-)$1	1	48	76	18.7820
.(((((.((...........)).)))))	chr4:1386696-1386961(+)$1	1	120	148	18.1221
..(((((((...........))))))).	chr1:228270929-228271165(+)$1	1	24	52	19.2043
((((((.((...........))))))))	chr3:17741296-17741607(-)$1	1	39	67	17.9365
.(((((..............)))))...	chr4:1386354-1386645(+)$1	1	84	112	20.1883
(((((((((...........))))))).	chr11:3011088-3011328(-)$1	1	109	137	18.5354
..(((((((..........)))))))..	chr1:27022737-27022991(+)$1	1	129	157	15.4213
.((((..(((.........)))....))	chr7:923631-923877(+)$1	1	137	165	13.1957
((((((((.............)))))))	chr3:41241477-41241716(+)$1	1	200	228	16.7889
((((.(((((..........))))).))	chr1:20235995-20236245(+)$1	1	28	56	14.4302

#PSSM
f : 0.15	[ : 0.15	" : 0.11	g : 0.07	e : 0.07	c : 0.07	! : 0.05	d : 0.05	b : 0.03	i : 0.03	: : 0.03	h : 0.03	$ : 0.01	= : 0.01	# : 0.01	
e : 0.21	f : 0.15	c : 0.13	" : 0.09	d : 0.09	! : 0.05	g : 0.03	h : 0.03	b : 0.03	a : 0.01	[ : 0.01	: : 0.01	i : 0.01	= : 0.01	# : 0.01	
e : 0.23	f : 0.13	c : 0.11	g : 0.09	" : 0.07	d : 0.07	b : 0.05	h : 0.03	i : 0.03	! : 0.03	[ : 0.01	# : 0.01	a : 0.01	= : 0.01	
e : 0.25	f : 0.17	c : 0.11	d : 0.07	g : 0.07	! : 0.05	" : 0.03	b : 0.03	[ : 0.03	h : 0.03	i : 0.03	# : 0.01	= : 0.01	
e : 0.29	[ : 0.13	f : 0.11	! : 0.09	d : 0.07	g : 0.07	c : 0.03	h : 0.03	i : 0.03	a : 0.01	# : 0.01	" : 0.01	= : 0.01	
e : 0.33	! : 0.15	d : 0.09	f : 0.07	g : 0.07	c : 0.05	[ : 0.03	h : 0.03	i : 0.03	a : 0.01	# : 0.01	" : 0.01	b : 0.01	
e : 0.17	c : 0.13	d : 0.13	! : 0.07	g : 0.07	w : 0.05	f : 0.05	[ : 0.05	b : 0.05	x : 0.03	h : 0.03	i : 0.03	a : 0.01	v : 0.01	
c : 0.21	e : 0.15	d : 0.13	b : 0.11	w : 0.09	g : 0.05	f : 0.03	x : 0.03	v : 0.03	h : 0.03	i : 0.03	a : 0.01	
c : 0.19	w : 0.17	e : 0.11	d : 0.11	v : 0.09	b : 0.07	g : 0.05	f : 0.03	x : 0.03	u : 0.03	i : 0.03	
s : 0.19	w : 0.17	t : 0.13	v : 0.13	c : 0.07	d : 0.05	r : 0.05	x : 0.05	e : 0.03	u : 0.03	i : 0.01	
s : 0.23	r : 0.19	w : 0.17	t : 0.13	v : 0.13	x : 0.05	u : 0.03	i : 0.01	
s : 0.23	r : 0.21	w : 0.17	t : 0.13	v : 0.13	x : 0.05	u : 0.03	
s : 0.23	r : 0.21	w : 0.17	t : 0.13	v : 0.13	x : 0.05	u : 0.03	
s : 0.23	r : 0.21	w : 0.17	t : 0.13	v : 0.13	x : 0.05	u : 0.03	
s : 0.23	r : 0.21	w : 0.17	t : 0.13	v : 0.13	x : 0.05	u : 0.03	
s : 0.23	r : 0.21	w : 0.17	t : 0.13	v : 0.13	x : 0.05	u : 0.03	
s : 0.23	r : 0.21	w : 0.17	t : 0.13	v : 0.13	x : 0.05	u : 0.03	
s : 0.23	r : 0.21	w : 0.17	t : 0.13	v : 0.13	x : 0.05	u : 0.03	
s : 0.23	w : 0.17	r : 0.15	t : 0.13	v : 0.13	x : 0.05	u : 0.03	e : 0.03	f : 0.01	
c : 0.17	w : 0.17	t : 0.13	v : 0.11	e : 0.07	d : 0.07	x : 0.05	f : 0.03	s : 0.03	u : 0.03	b : 0.01	r : 0.01	g : 0.01	
c : 0.19	e : 0.15	b : 0.13	w : 0.11	d : 0.11	v : 0.09	x : 0.05	g : 0.05	f : 0.03	i : 0.01	
c : 0.19	e : 0.19	d : 0.13	b : 0.11	w : 0.07	a : 0.05	g : 0.05	f : 0.03	h : 0.03	v : 0.03	x : 0.01	i : 0.01	
] : 0.23	e : 0.23	d : 0.17	c : 0.05	f : 0.05	2 : 0.05	g : 0.05	h : 0.03	i : 0.03	x : 0.01	4 : 0.01	
e : 0.29	d : 0.13	f : 0.11	2 : 0.09	g : 0.09	3 : 0.05	c : 0.05	h : 0.03	i : 0.03	x : 0.01	b : 0.01	4 : 0.01	
e : 0.25	f : 0.15	d : 0.09	g : 0.09	c : 0.07	3 : 0.05	] : 0.05	2 : 0.05	h : 0.03	i : 0.03	b : 0.01	= : 0.01	4 : 0.01	
e : 0.17	f : 0.15	3 : 0.09	] : 0.09	g : 0.09	c : 0.07	d : 0.07	a : 0.03	4 : 0.03	h : 0.03	i : 0.03	b : 0.01	= : 0.01	2 : 0.01	
e : 0.17	f : 0.17	c : 0.13	g : 0.09	3 : 0.07	] : 0.07	d : 0.07	b : 0.03	h : 0.03	i : 0.03	4 : 0.01	: : 0.01	= : 0.01	
e : 0.17	f : 0.17	c : 0.11	3 : 0.07	g : 0.05	2 : 0.05	d : 0.05	] : 0.05	0 : 0.03	h : 0.03	i : 0.03	4 : 0.01	: : 0.01	a : 0.01	b : 0.01	= : 0.01	

#score	840.7263982080863
#seq	51
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_CDS_m2_run1.txt

#BEAR
""iiiiiiiiiooooooiiiiiiiii22	chr17:80016296-80016549(-)$1	253	174	202	11.0505
iiieeeee!!bbnnnnnbb22eeeeebb	chr19:47987247-47987562(-)$1	315	187	215	9.8348
ebb!!dddd[bbnnnnnbb]dddd4444	chr8:30669812-30670093(-)$1	281	147	175	9.8594
==========[annnnna]=========	chr19:56599444-56599693(-)$1	249	107	135	13.2973
d[bb$$$$$cccnnnnnccc333bb]dd	chr14:23790888-23791160(+)$1	272	128	156	12.0507
ggggggg!!cccnnnnnccc22gggggg	chr22:51153087-51153421(+)$1	334	115	143	13.5734
dd!!a[ffffffnnnnnffffff]addd	chrX:48858485-48858754(-)$1	269	56	84	9.5998
eeeea[ccccccnnnnnccc333ccc]a	chr12:104324163-104324407(+)$1	244	118	146	12.8339
ggga[bb[bb[annnnna]bb22bb22a	chr17:48784864-48785161(-)$1	297	4	32	10.8299
%ggggggg[bboooooobbgggggggee	chr2:54197719-54197994(-)$1	275	178	206	9.7051
ffffff!!cccooooooccc22ffffff	chr7:77166746-77167019(+)$1	273	131	159	11.1344
eeee[bb"""bbnnnnnbb333bb]eee	chr5:138629666-138630028(+)$1	362	111	139	11.3873
iiiiiiiiicccnnnnnccc22iiiiii	chr12:19592478-19592777(+)$1	299	229	257	13.2889
fff[ccc"""ccclllccc333ccc]ff	chr3:50374570-50374902(-)$1	332	290	318	10.1676
c[a[bb[eeeeennnnneeeeebb]a]c	chr19:17450229-17450548(+)$1	319	58	86	10.4669
ggggggg!!cccmmmmccc4444ggggg	chr10:70101448-70101711(+)$1	263	198	226	9.5695
gggggg"""cccnnnnnccc333ggggg	chr11:58346514-58346902(+)$1	388	244	272	14.2711
fffff[ccc[bbnnnnnbbcccffffff	chr6:43596675-43596990(-)$1	315	90	118	10.3267
###ccc[ddddoooooodddd]cccccc	chr2:11484147-11484458(-)$1	311	266	294	10.4806
ddd!!bb!!cccnnnnnccc333bb22d	chr17:47841223-47841539(-)$1	316	61	89	12.9457
c[dddd[ddddoooooodddd]dddd]c	chr11:2154655-2154858(-)$1	203	2	30	9.4528
)ffffff[cccoooooocccffffffhh	chr11:2154708-2154935(-)$1	227	25	53	9.6312
ddd!!gggggggooooooggggggg333	chr17:37618164-37618425(+)$1	261	190	218	10.9826
cc"""bb[ddddnnnnndddd]bb333c	chr7:766571-766839(-)$1	268	225	253	11.8015
====="""a[ddddllldddd]a]====	chr16:89894829-89895118(+)$1	289	15	43	9.6131
"eeeee"""cccooooooccc333eeee	chr20:33872188-33872480(-)$1	292	220	248	11.8007
ccc[bb[a[cccoooooocccabb]ccc	chr1:3703445-3703724(-)$1	279	127	155	11.0961
b!!iiiiiiiiiooooooiiiiiiiii2	chr11:93474465-93474736(-)$1	271	75	103	11.0452
hh[dddd!!cccooooooccc333dddd	chr17:41622786-41623047(+)$1	261	18	46	10.9923
b!!a[gggggggnnnnnggggggga]bb	chr7:92077062-92077337(+)$1	275	47	75	11.5328
ddd####ddddoooooodddd22dddd]	chr1:244998956-244999252(+)$1	296	185	213	9.9672
d[a[ccc[ddddnnnnndddd]ccc]a]	chr16:22019503-22019805(+)$1	302	213	241	12.2938
gggg[ccc[cccooooooccc]ccc]gg	chr17:7476811-7477140(+)$1	329	128	156	12.0857
ccbb[a!!ddddnnnnndddd22a]bb]	chr4:26322461-26322798(+)$1	337	197	225	11.4951
eggggggg[cccnnnnnccc22gggggg	chr12:19593016-19593339(+)$1	323	212	240	13.1503
ffffff####cccooooooccc4444ff	chr19:6739610-6739902(+)$1	292	163	191	9.5896
!eeeeebb[cccnnnnncccbb22eeee	chr14:24901511-24901776(+)$1	265	178	206	10.4282
##bb[gggggggnnnnnggggggg]bb0	chr17:46986073-46986345(-)$1	272	115	143	10.4886
fffff!!eeeeeooooooeeeee333ff	chr17:79913316-79913586(-)$1	270	45	73	9.4606
e!!ddddeeeeennnnneeeee]dddd]	chr8:144672185-144672436(-)$1	251	4	32	9.6584
b[a[bb[eeeeennnnneeeee]bb]a]	chr1:234614167-234614444(-)$1	277	206	234	10.7910
[a[ffffff[aooooooa]ffffff]a]	chr9:136223054-136223330(-)$1	276	101	129	10.0326
bb!!ccc[ddddnnnnndddd22ccc22	chr4:52709261-52709620(+)$1	359	76	104	11.5204
eeeee####cccooooooccc22eeeee	chr14:24901278-24901568(+)$1	290	64	92	11.1458
iiiiiiii!!aooooooa22iiiiiiii	chr1:156351191-156351519(+)$1	328	1	29	11.2823
bb[ggggggg[aooooooaggggggg]b	chr15:42867757-42868041(+)$1	284	153	181	10.4713
!bbeeeee[cccnnnnnccceeeee]bb	chr1:155658046-155658325(-)$1	279	241	269	10.9410
ffffff"""cccnnnnnccc333fffff	chr15:90172464-90172739(+)$1	275	156	184	13.1606
!bb[bb[a!!bbnnnnnbb22a]bb]bb	chr3:127872217-127872487(+)$1	270	68	96	10.7313
[ggggggg[ccc[allla]ccc]ggggg	chr12:123997754-123998011(-)$1	257	177	205	10.4178
hhh!!ddddcccnnnnnccc]dddd333	chr7:154794531-154794792(-)$1	261	104	132	11.4178
dddd[a!!ddddnnnnndddd22adddd	chr11:2156538-2156766(-)$1	228	34	62	11.2480
eeeee[a[ddddnnnnndddd]a]eeee	chr14:24901240-24901478(+)$1	238	83	111	11.0533
###gggggggoooooogggggggdddd]	chr22:37415720-37416003(+)$1	283	83	111	8.9597
ccc[bb!!cccooooooccc]bb]ccc]	chr12:56552143-56552507(+)$1	364	29	57	11.1313
dffffff[cccooooooccc]ffffff4	chr7:100136949-100137244(+)$1	295	107	135	10.5604
"bb[bb[ccc[annnnna]ccc]bb]bb	chr4:129208690-129208934(-)$1	244	206	234	11.4232
iiii[eeeee[annnnna]eeeeeiiii	chr15:67391100-67391391(+)$1	291	65	93	11.2602
ddd!!bb####annnnna4444bb22dd	chr2:54197794-54198050(-)$1	256	36	64	11.3457
h!!ccc[ddddooooooddddccc4444	chr6:33179049-33179291(+)$1	242	29	57	10.3809
bccc[bb[a[bbnnnnnbb]a]bbccc]	chr10:91404792-91405084(-)$1	292	43	71	11.0565

#otherMatches

#Seq PSSM
CCCCAGUGGGGCUGCUCCCCUGCUGGCC	chr17:80016296-80016549(-)$1	253	174	202	11.0505
CGCGAGGACAGCUUCACGCGCUUCUCGU	chr19:47987247-47987562(-)$1	315	187	215	9.8348
CGGGCCGCCAUGGACGACAAGGCGUUCA	chr8:30669812-30670093(-)$1	281	147	175	9.8594
UGCGUGGAGUGCGGGGAGGGCUUCGUGC	chr19:56599444-56599693(-)$1	249	107	135	13.2973
CAUUGAGGACCCGGUGAgggaaggaggg	chr14:23790888-23791160(+)$1	272	128	156	12.0507
UCUUGGGAGCCUGGGGUGGGAGCUCAAG	chr22:51153087-51153421(+)$1	334	115	143	13.5734
GCCAGGAGGCGCGAGCUGCGUCUGCGCA	chrX:48858485-48858754(-)$1	269	56	84	9.5998
CGGCCGCACGCCAUGAGGGCCCUGUGGG	chr12:104324163-104324407(+)$1	244	118	146	12.8339
GGGCAGCGGCGCGAGCAGGGCGGGCGAG	chr17:48784864-48785161(-)$1	297	4	32	10.8299
AAGCUGCUGCCCUACGCGGAGCGGCUAG	chr2:54197719-54197994(-)$1	275	178	206	9.7051
GAUCCUGAGGAAAUUCAUCCAGAGGGUC	chr7:77166746-77167019(+)$1	273	131	159	11.1344
UUGGGUGAAGAGGUGCGCUGACCGGCCG	chr5:138629666-138630028(+)$1	362	111	139	11.3873
GGGUUCGGCGGCGCGGGGCCGGGCUGAG	chr12:19592478-19592777(+)$1	299	229	257	13.2889
CGGGACCAGGUGGGAGCCAGGGGGUGCC	chr3:50374570-50374902(-)$1	332	290	318	10.1676
GUGACGUGCUGGAGACCCCAGUCGACCU	chr19:17450229-17450548(+)$1	319	58	86	10.4669
GUAGUGCAAACUUUAAAGUGCAGGUAUU	chr10:70101448-70101711(+)$1	263	198	226	9.5695
CGGGGGAGACGGAAGAGCCGAGACCCCC	chr11:58346514-58346902(+)$1	388	244	272	14.2711
GAUGGACUCGCGGGUAUCGGAGCUGUUC	chr6:43596675-43596990(-)$1	315	90	118	10.3267
CGAGCCGCCAGAGGAAGCUGGAGGCGCU	chr2:11484147-11484458(-)$1	311	266	294	10.4806
UGGGGCUGAGGCAGGCAGCCGGGAGAGC	chr17:47841223-47841539(-)$1	316	61	89	12.9457
UCGUUGAGGAGUGCUGUUUCCGCAGCUG	chr11:2154655-2154858(-)$1	203	2	30	9.4528
CUGUGGGACUUCCAGGCAGGCCCGCAAG	chr11:2154708-2154935(-)$1	227	25	53	9.6312
AAGGACGGGAGUGGAGGAGCUUCUGGAA	chr17:37618164-37618425(+)$1	261	190	218	10.9826
CUCAGGCAGCGCAGCAAGCGCGGCAGCA	chr7:766571-766839(-)$1	268	225	253	11.8015
gccccCAACCUGAGGCGCUCGCGCGGGG	chr16:89894829-89895118(+)$1	289	15	43	9.6131
UGUGAGAUCGGCUGCUUUGCCAAGCUCA	chr20:33872188-33872480(-)$1	292	220	248	11.8007
agcaggacgugggagaUGCCGGCCGGCU	chr1:3703445-3703724(-)$1	279	127	155	11.0961
CCUUUUCUUCCGCACGGUUGGAGGAGGU	chr11:93474465-93474736(-)$1	271	75	103	11.0452
CUCGGGUGACUCAGGGGCGGGGCAGCCC	chr17:41622786-41623047(+)$1	261	18	46	10.9923
GGAGCGCAGGGGGAGAUCCUCUGCCAUC	chr7:92077062-92077337(+)$1	275	47	75	11.5328
GUGUCACUGGCUUCUCUGCCACCCAUGG	chr1:244998956-244999252(+)$1	296	185	213	9.9672
GGGAGUCUGCGGGUGAGCCGCUggcgcg	chr16:22019503-22019805(+)$1	302	213	241	12.2938
GCCGGGUGGUCGAGGGAGCGAGCACAUG	chr17:7476811-7477140(+)$1	329	128	156	12.0857
UGUUGUGACAGGGUAAGUCUGAGGGAAU	chr4:26322461-26322798(+)$1	337	197	225	11.4951
CCUCCGGGGGCCGGCGGGGCAGCUUGGA	chr12:19593016-19593339(+)$1	323	212	240	13.1503
UGGAUUGGGGCACUGAGCUGUGGGUAAG	chr19:6739610-6739902(+)$1	292	163	191	9.5896
ACUUGGUGACUGGCACACAGCGUUUCAA	chr14:24901511-24901776(+)$1	265	178	206	10.4282
GGUCGAGCCCCGGAGCUCGGGGCUGGGG	chr17:46986073-46986345(-)$1	272	115	143	10.4886
GUGCUGAGCUCUGAGCCUGGGGUGGGGG	chr17:79913316-79913586(-)$1	270	45	73	9.4606
GCUUGACUUCGAAGUCCUCGAAUGUCAU	chr8:144672185-144672436(-)$1	251	4	32	9.6584
GGCGGCGCUGCGGGCCGUGUGGGGCGGG	chr1:234614167-234614444(-)$1	277	206	234	10.7910
gugcggggcgcggggaggggUCCCGGAG	chr9:136223054-136223330(-)$1	276	101	129	10.0326
GUGAGCUGGUGGGGGGACCGCGAGGCGA	chr4:52709261-52709620(+)$1	359	76	104	11.5204
GGGUGGAGGGGCAAGGGAGUCAGCACCC	chr14:24901278-24901568(+)$1	290	64	92	11.1458
GGGGGCUGGGCAGCAUCGGACGGCCCUC	chr1:156351191-156351519(+)$1	328	1	29	11.2823
CGGAUGGCGAACGUGCAGGUCGCCGUGC	chr15:42867757-42868041(+)$1	284	153	181	10.4713
ACGAUCCCAGUGUCGGUUGCGGGAUCCG	chr1:155658046-155658325(-)$1	279	241	269	10.9410
GGAGCAGCUGCAUGUUCUGCUCGUGCUC	chr15:90172464-90172739(+)$1	275	156	184	13.1606
ACCGCGGCGACUACCGAGGGAGGUGAGG	chr3:127872217-127872487(+)$1	270	68	96	10.7313
GAGGAGUUUGUGGCUUUGGCACUGACUU	chr12:123997754-123998011(-)$1	257	177	205	10.4178
ggugggcggggccgggcgccgccgcgga	chr7:154794531-154794792(-)$1	261	104	132	11.4178
UCGAUGCUGGUGCUUCUCACCUUCUUGG	chr11:2156538-2156766(-)$1	228	34	62	11.2480
CCCUCAGGCCACAGUCAGUGGGUGGAGG	chr14:24901240-24901478(+)$1	238	83	111	11.0533
GGUCCGCUGCAGGUUGGUGGCGGGAGGA	chr22:37415720-37416003(+)$1	283	83	111	8.9597
CUGAGCAGUCAAGAUGGUGGGGCCCAGG	chr12:56552143-56552507(+)$1	364	29	57	11.1313
ugccgucgggugcgggagcugggUGGCU	chr7:100136949-100137244(+)$1	295	107	135	10.5604
UGCGCUgggggcggcggggucugggggc	chr4:129208690-129208934(-)$1	244	206	234	11.4232
UGUUGCUCAGCUGGGGGAUUUGGGGACG	chr15:67391100-67391391(+)$1	291	65	93	11.2602
GGCGACGAAGACGCGGAGGAGGCGGAGC	chr2:54197794-54198050(-)$1	256	36	64	11.3457
CAAGCGACCCCGUGGAGGGGGCGCAGGG	chr6:33179049-33179291(+)$1	242	29	57	10.3809
GGCGGUGGCGGGCAGGACUGGGCAUGCU	chr10:91404792-91405084(-)$1	292	43	71	11.0565

#DB
..(((((((((......)))))))))..	chr17:80016296-80016549(-)$1	1	174	202	11.0505
)))(((((..((.....))..)))))((	chr19:47987247-47987562(-)$1	1	187	215	9.8348
)((..((((.((.....)).))))....	chr8:30669812-30670093(-)$1	1	147	175	9.8594
((((((((((.(.....).)))))))))	chr19:56599444-56599693(-)$1	1	107	135	13.2973
(.((.....(((.....)))...)).))	chr14:23790888-23791160(+)$1	1	128	156	12.0507
(((((((..(((.....)))..))))))	chr22:51153087-51153421(+)$1	1	115	143	13.5734
((..(.((((((.....)))))).))))	chrX:48858485-48858754(-)$1	1	56	84	9.5998
(((((.((((((.....)))...))).)	chr12:104324163-104324407(+)$1	1	118	146	12.8339
((((.((.((.(.....).))..))..)	chr17:48784864-48785161(-)$1	1	4	32	10.8299
.(((((((.((......)))))))))))	chr2:54197719-54197994(-)$1	1	178	206	9.7051
((((((..(((......)))..))))))	chr7:77166746-77167019(+)$1	1	131	159	11.1344
((((.((...((.....))...)).)))	chr5:138629666-138630028(+)$1	1	111	139	11.3873
((((((((((((.....)))..))))))	chr12:19592478-19592777(+)$1	1	229	257	13.2889
(((.(((...(((...)))...))).))	chr3:50374570-50374902(-)$1	1	290	318	10.1676
(.(.((.(((((.....))))))).).)	chr19:17450229-17450548(+)$1	1	58	86	10.4669
(((((((..(((....)))....)))))	chr10:70101448-70101711(+)$1	1	198	226	9.5695
((((((...(((.....)))...)))))	chr11:58346514-58346902(+)$1	1	244	272	14.2711
(((((.(((.((.....)))))))))))	chr6:43596675-43596990(-)$1	1	90	118	10.3267
...(((.((((......)))).))))))	chr2:11484147-11484458(-)$1	1	266	294	10.4806
(((..((..(((.....)))...))..)	chr17:47841223-47841539(-)$1	1	61	89	12.9457
(.((((.((((......)))).)))).)	chr11:2154655-2154858(-)$1	1	2	30	9.4528
.((((((.(((......)))))))))))	chr11:2154708-2154935(-)$1	1	25	53	9.6312
(((..(((((((......)))))))...	chr17:37618164-37618425(+)$1	1	190	218	10.9826
((...((.((((.....)))).))...)	chr7:766571-766839(-)$1	1	225	253	11.8015
(((((...(.((((...)))).).))))	chr16:89894829-89895118(+)$1	1	15	43	9.6131
.(((((...(((......)))...))))	chr20:33872188-33872480(-)$1	1	220	248	11.8007
(((.((.(.(((......)))))).)))	chr1:3703445-3703724(-)$1	1	127	155	11.0961
(..(((((((((......))))))))).	chr11:93474465-93474736(-)$1	1	75	103	11.0452
((.((((..(((......)))...))))	chr17:41622786-41623047(+)$1	1	18	46	10.9923
(..(.(((((((.....)))))))).))	chr7:92077062-92077337(+)$1	1	47	75	11.5328
(((....((((......))))..)))).	chr1:244998956-244999252(+)$1	1	185	213	9.9672
(.(.(((.((((.....)))).))).).	chr16:22019503-22019805(+)$1	1	213	241	12.2938
((((.(((.(((......))).))).))	chr17:7476811-7477140(+)$1	1	128	156	12.0857
((((.(..((((.....))))..).)).	chr4:26322461-26322798(+)$1	1	197	225	11.4951
((((((((.(((.....)))..))))))	chr12:19593016-19593339(+)$1	1	212	240	13.1503
((((((....(((......)))....))	chr19:6739610-6739902(+)$1	1	163	191	9.5896
.(((((((.(((.....)))))..))))	chr14:24901511-24901776(+)$1	1	178	206	10.4282
..((.(((((((.....))))))).)).	chr17:46986073-46986345(-)$1	1	115	143	10.4886
(((((..(((((......)))))...))	chr17:79913316-79913586(-)$1	1	45	73	9.4606
(..(((((((((.....))))).)))).	chr8:144672185-144672436(-)$1	1	4	32	9.6584
(.(.((.(((((.....))))).)).).	chr1:234614167-234614444(-)$1	1	206	234	10.7910
.(.((((((.(......).)))))).).	chr9:136223054-136223330(-)$1	1	101	129	10.0326
((..(((.((((.....))))..)))..	chr4:52709261-52709620(+)$1	1	76	104	11.5204
(((((....(((......)))..)))))	chr14:24901278-24901568(+)$1	1	64	92	11.1458
((((((((..(......)..))))))))	chr1:156351191-156351519(+)$1	1	1	29	11.2823
((.(((((((.(......)))))))).)	chr15:42867757-42868041(+)$1	1	153	181	10.4713
.(((((((.(((.....)))))))).))	chr1:155658046-155658325(-)$1	1	241	269	10.9410
((((((...(((.....)))...)))))	chr15:90172464-90172739(+)$1	1	156	184	13.1606
.((.((.(..((.....))..).)).))	chr3:127872217-127872487(+)$1	1	68	96	10.7313
.(((((((.(((.(...).))).)))))	chr12:123997754-123998011(-)$1	1	177	205	10.4178
(((..(((((((.....))).))))...	chr7:154794531-154794792(-)$1	1	104	132	11.4178
((((.(..((((.....))))..)))))	chr11:2156538-2156766(-)$1	1	34	62	11.2480
(((((.(.((((.....)))).).))))	chr14:24901240-24901478(+)$1	1	83	111	11.0533
...(((((((......))))))))))).	chr22:37415720-37416003(+)$1	1	83	111	8.9597
(((.((..(((......))).)).))).	chr12:56552143-56552507(+)$1	1	29	57	11.1313
(((((((.(((......))).)))))).	chr7:100136949-100137244(+)$1	1	107	135	10.5604
.((.((.(((.(.....).))).)).))	chr4:129208690-129208934(-)$1	1	206	234	11.4232
((((.(((((.(.....).)))))))))	chr15:67391100-67391391(+)$1	1	65	93	11.2602
(((..((....(.....)....))..))	chr2:54197794-54198050(-)$1	1	36	64	11.3457
(..(((.((((......)))))))....	chr6:33179049-33179291(+)$1	1	29	57	10.3809
((((.((.(.((.....)).).))))).	chr10:91404792-91405084(-)$1	1	43	71	11.0565

#PSSM
d : 0.14	e : 0.11	f : 0.09	c : 0.09	b : 0.09	g : 0.08	i : 0.06	" : 0.04	# : 0.04	h : 0.04	! : 0.04	= : 0.03	[ : 0.03	% : 0.01	) : 0.01	
g : 0.13	f : 0.13	b : 0.09	d : 0.09	e : 0.09	[ : 0.08	c : 0.08	i : 0.06	! : 0.06	# : 0.04	= : 0.03	h : 0.03	" : 0.01	a : 0.01	
g : 0.13	f : 0.13	b : 0.11	! : 0.09	e : 0.09	d : 0.09	i : 0.08	a : 0.04	c : 0.04	[ : 0.04	= : 0.03	# : 0.03	" : 0.01	h : 0.01	
g : 0.14	e : 0.13	f : 0.13	[ : 0.13	! : 0.11	i : 0.08	d : 0.06	b : 0.04	c : 0.04	= : 0.03	a : 0.03	" : 0.01	# : 0.01	
[ : 0.14	g : 0.13	f : 0.13	e : 0.09	b : 0.09	! : 0.08	c : 0.08	i : 0.06	d : 0.04	= : 0.03	a : 0.03	$ : 0.01	" : 0.01	# : 0.01	
b : 0.19	g : 0.18	f : 0.09	c : 0.09	e : 0.08	d : 0.08	i : 0.06	[ : 0.06	# : 0.03	a : 0.03	= : 0.01	$ : 0.01	" : 0.01	! : 0.01	
g : 0.16	[ : 0.13	b : 0.11	c : 0.09	! : 0.08	i : 0.06	d : 0.06	f : 0.06	" : 0.06	e : 0.04	# : 0.04	= : 0.01	$ : 0.01	a : 0.01	
! : 0.13	[ : 0.13	g : 0.13	e : 0.11	d : 0.09	" : 0.09	i : 0.06	c : 0.06	# : 0.04	f : 0.03	a : 0.03	= : 0.01	$ : 0.01	b : 0.01	
d : 0.19	! : 0.11	c : 0.11	[ : 0.11	" : 0.08	e : 0.08	g : 0.08	i : 0.04	# : 0.04	f : 0.03	a : 0.03	= : 0.01	$ : 0.01	b : 0.01	
c : 0.37	d : 0.16	[ : 0.08	e : 0.08	g : 0.08	! : 0.04	i : 0.03	b : 0.03	" : 0.03	# : 0.03	= : 0.01	f : 0.01	
c : 0.39	d : 0.18	b : 0.11	[ : 0.08	e : 0.06	g : 0.04	i : 0.03	a : 0.03	f : 0.01	o : 0.01	# : 0.01	
c : 0.32	o : 0.21	d : 0.11	b : 0.09	a : 0.09	e : 0.06	g : 0.04	f : 0.01	i : 0.01	
n : 0.55	o : 0.36	c : 0.03	m : 0.01	d : 0.01	[ : 0.01	
n : 0.55	o : 0.37	l : 0.01	m : 0.01	d : 0.01	a : 0.01	
n : 0.55	o : 0.37	l : 0.04	m : 0.01	
n : 0.55	o : 0.37	l : 0.04	m : 0.01	
n : 0.55	o : 0.36	c : 0.03	l : 0.03	g : 0.01	
c : 0.27	d : 0.18	o : 0.16	a : 0.13	b : 0.11	e : 0.04	g : 0.04	i : 0.01	f : 0.01	
c : 0.36	d : 0.18	b : 0.11	] : 0.09	e : 0.06	g : 0.06	i : 0.03	f : 0.01	o : 0.01	2 : 0.01	a : 0.01	4 : 0.01	
c : 0.39	d : 0.18	g : 0.09	e : 0.08	2 : 0.04	i : 0.03	] : 0.03	f : 0.03	3 : 0.03	4 : 0.03	= : 0.01	b : 0.01	
d : 0.19	c : 0.14	3 : 0.11	2 : 0.09	g : 0.09	e : 0.09	i : 0.04	f : 0.04	] : 0.04	b : 0.03	4 : 0.03	= : 0.01	a : 0.01	
2 : 0.16	3 : 0.14	] : 0.13	e : 0.11	g : 0.09	c : 0.08	f : 0.06	i : 0.04	d : 0.03	4 : 0.03	a : 0.03	b : 0.03	= : 0.01	
g : 0.13	3 : 0.11	2 : 0.11	b : 0.11	f : 0.09	c : 0.08	] : 0.08	i : 0.06	e : 0.06	d : 0.04	4 : 0.03	a : 0.03	= : 0.01	
b : 0.19	g : 0.16	c : 0.11	d : 0.09	f : 0.09	i : 0.06	e : 0.06	] : 0.06	3 : 0.04	a : 0.03	= : 0.01	4 : 0.01	2 : 0.01	
g : 0.13	c : 0.13	d : 0.11	e : 0.09	b : 0.09	f : 0.09	i : 0.08	] : 0.08	4 : 0.04	= : 0.03	a : 0.03	3 : 0.03	2 : 0.01	
] : 0.16	g : 0.11	d : 0.11	e : 0.09	c : 0.09	i : 0.08	f : 0.08	3 : 0.06	4 : 0.04	2 : 0.04	= : 0.03	b : 0.03	a : 0.01	
d : 0.13	b : 0.11	f : 0.11	g : 0.09	e : 0.09	2 : 0.06	] : 0.06	i : 0.06	c : 0.06	3 : 0.04	a : 0.04	4 : 0.03	= : 0.03	h : 0.01	
] : 0.14	b : 0.09	d : 0.09	g : 0.09	e : 0.09	f : 0.09	c : 0.08	2 : 0.04	4 : 0.04	i : 0.04	= : 0.03	a : 0.03	3 : 0.03	h : 0.01	0 : 0.01	

#score	673.5734460220228
#seq	61
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_transcript_m2_run1.txt

#BEAR
dgggggggbboooooobb]ggggggg]d	chr3:196662290-196662622(-)$1	332	235	263	13.1446
!!bbgggggggnnnnnggggggg]bb22	chr16:583980-584231(+)$1	251	205	233	8.5188
ccc[bb[cccooooooccc]bb]ccc]c	chr19:28931886-28932142(-)$1	256	41	69	12.7884
ffffff[cccooooooccc22ffffff3	chr6:27860322-27860574(-)$1	252	150	178	12.2588
ddd[ccccccooooooccc]ccc]dddd	chr17:27877931-27878180(+)$1	249	163	191	12.7755
eeeeeaddddoooooodddd]a]eeeee	chr7:1493466-1493733(-)$1	267	136	164	10.9164
ffffffddddoooooodddd]ffffff:	chr1:149857582-149857836(-)$1	254	41	69	9.6507
ee[gggggggammmma]ggggggg]eee	chr6:16266199-16266408(+)$1	209	50	78	10.1717
gggggg[cccmmmmccc]gggggggccc	chr16:88520653-88520941(+)$1	288	184	212	9.4846
cc[a[bb[bboooooobb]bb]a]ccch	chrM:14201-14422(-)$1	221	173	201	11.3701
cc[bb!!acccooooooccc]a22bb]c	chr11:67817006-67817250(+)$1	244	176	204	11.4378
bb[ffffffaooooooa]ffffff]bb]	chr7:1892853-1893160(-)$1	307	245	273	11.3033
gggg[a[cccooooooccca]ggggggg	chr17:73837031-73837303(-)$1	272	127	155	13.8927
!iiiiiiiiimmmmiiiiiiiii22ccc	chr1:12089605-12089925(+)$1	320	154	182	9.5154
bb:===========lll===========	chr19:932958-933220(+)$1	262	92	120	9.5007
d####eeeeeooooooeeeee22dddd]	chr16:88528759-88529008(+)$1	249	117	145	10.2671
==========oooooo==========dd	chr5:53674378-53674654(+)$1	276	135	163	14.6124
eee[ccc[bboooooobbccceeeee44	chr13:92000036-92000292(+)$1	256	141	169	11.5820
iiiiiiiii[ccclllccc]iiiiiiii	chr17:80851019-80851255(+)$1	236	11	39	10.6832
a[hhhhhhhhoooooohhhhhhhh]a]e	chr16:88528563-88528807(+)$1	244	135	163	10.9324
dd!!ccc[bboooooobb]ccc22dddd	chr4:904680-904952(-)$1	272	56	84	11.8194
===========mmmm===========ee	chr6:31937182-31937470(+)$1	288	127	155	11.2047
cc[ggggggg[ammmma]ggggggg]cc	chr16:85659318-85659579(+)$1	261	112	140	10.3519
bb[gggggggooooooggggggg]bbhh	chr16:85673507-85673818(+)$1	311	90	118	12.9873
:eeeee[cccooooooccc4444eeeee	chr19:45650191-45650433(+)$1	242	210	238	11.6148
ff!!bb[cccooooooccc]bb]fffff	chr4:1239088-1239321(-)$1	233	196	224	12.4197
ggggggg[bboooooobb]ggggggg]e	chr2:219140918-219141179(-)$1	261	22	50	13.2840
d!!gggggggooooooggggggg22ddd	chr1:109642813-109643021(+)$1	208	173	201	13.2657
ccc[aeeeeeooooooeeeee]a]ccc]	chr21:46494070-46494373(+)$1	303	59	87	11.3281
e:eeeeecccooooooccc]eeeee:hh	chr1:150547231-150547489(-)$1	258	15	43	9.9982
eeiiiiiiiiinnnnniiiiiiiii22e	chr7:148518045-148518294(-)$1	249	3	31	10.0785
bbiiiiiiiii==============[dd	chr22:50039613-50039842(-)$1	229	102	130	9.2352
ggggggddddooooooddddcccggggg	chr16:88523247-88523498(+)$1	251	74	102	11.8492
ddddd!!cccooooooccc]dddd333d	chr22:50010538-50010789(-)$1	251	138	166	12.0261
e[ccc!!cccooooooccc]ccceeeee	chr2:97534278-97534579(-)$1	301	210	238	13.2175
bb[a[eeeeeccclllccc4444eeeee	chr17:56408168-56408399(-)$1	231	100	128	8.5776
dd[ccc[cccooooooccc333ccc]dd	chr3:128211110-128211357(+)$1	247	139	167	13.5634
dddgggggggooooooggggggg333dd	chr22:50034924-50035177(-)$1	253	129	157	13.2471
b!!bb####aooooooa333bb22bb22	chr19:17389828-17390122(+)$1	294	260	288	11.1266
iiiiiiii[ccclllccc333iiiiiii	chr6:26216336-26216572(-)$1	236	62	90	10.7421
bb[a[==========[ffffff[ggggg	chr22:50024529-50024753(-)$1	224	114	142	8.1164
&ffffff[bboooooobb]ffffff]ee	chr5:136984407-136984617(-)$1	210	126	154	10.6992
[ggggggg[a[ammmmaa]gggggggaB	chr19:1433154-1433391(+)$1	237	24	52	9.1415
eee[ffffffooooooffffff]eeeee	chr21:46850521-46850787(+)$1	266	129	157	11.3655
ffffccc!!aooooooa]ccc]ffffff	chr16:85666887-85667138(+)$1	251	77	105	11.9262
dddd"""cccooooooccc22ddddddd	chr17:80445688-80445951(+)$1	263	170	198	11.4798
bb[ccca!!cccmmmmccc22a]cccbb	chr17:79526315-79526540(-)$1	225	189	217	8.4074
bb[gggggggrrrrrrrrrggggggg]b	chr17:7476527-7476763(+)$1	236	22	50	9.1692
e!!bb[ddddoooooodddd]bb333ee	chr17:62501969-62502234(-)$1	265	186	214	11.1178
=============lll============	chr6:16266446-16266651(+)$1	205	156	184	11.9620

#otherMatches

#Seq PSSM
UGUUUUAUAUUCUUUUGUAGUAAAACAA	chr3:196662290-196662622(-)$1	332	235	263	13.1446
GGUCCUGUCGUGGGAGGCGACGGUGAGG	chr16:583980-584231(+)$1	251	205	233	8.5188
UUGGUGGGAAAAAAUAUUUGCAAUAGGC	chr19:28931886-28932142(-)$1	256	41	69	12.7884
GUGGCCGAGUUCAAGCACUGAGGCCAUU	chr6:27860322-27860574(-)$1	252	150	178	12.2588
AGUAGCCCAGGACCAGCUGUGGUGGCUA	chr17:27877931-27878180(+)$1	249	163	191	12.7755
GUUGGCCAGGGCAAAUCUUGUGACCGAC	chr7:1493466-1493733(-)$1	267	136	164	10.9164
CUGGCGCUCGCUCGCUCGAGUCGCCGGC	chr1:149857582-149857836(-)$1	254	41	69	9.6507
ggcuucacugcugaagucagugagacca	chr6:16266199-16266408(+)$1	209	50	78	10.1717
GUGCCCUCGGAUGCCCGCGGGCACCCCC	chr16:88520653-88520941(+)$1	288	184	212	9.4846
GGGGGCUUUGUAUGAUUAUGGGCGUUGA	chrM:14201-14422(-)$1	221	173	201	11.3701
GCUGCUUGGCACACCCCUGCACCUGCUG	chr11:67817006-67817250(+)$1	244	176	204	11.4378
ggccugucccgacacagagggcaguccc	chr7:1892853-1893160(-)$1	307	245	273	11.3033
UACAACUCCAUGGCUCUGGGCUGUGGUC	chr17:73837031-73837303(-)$1	272	127	155	13.8927
CGGAGCCUGGGGACCUGGGUUCCUGGCU	chr1:12089605-12089925(+)$1	320	154	182	9.5154
GCGCCGGCCCGAGCUGGGCUUGGGUUGG	chr19:932958-933220(+)$1	262	92	120	9.5007
cucacagcACACAGUGGUGCUCUGGCUG	chr16:88528759-88529008(+)$1	249	117	145	10.2671
gcucuuugcccuugcuggcagagggcag	chr5:53674378-53674654(+)$1	276	135	163	14.6124
CCGGCCAGCCGAAGAUGGUGGCGGCUAC	chr13:92000036-92000292(+)$1	256	141	169	11.5820
AGCUUUGUGGCACUUUGUGGCAUGGGGC	chr17:80851019-80851255(+)$1	236	11	39	10.6832
CCUCAGUUCCCCACCUGGAGCUGAAGUG	chr16:88528563-88528807(+)$1	244	135	163	10.9324
UCCGUUUGUCAGGACAGGAAGAGAGGCC	chr4:904680-904952(-)$1	272	56	84	11.8194
GGGCUCUCAGGGACCCCUGAGGGCCUGG	chr6:31937182-31937470(+)$1	288	127	155	11.2047
GGGCCCUGGAGGGCAGCGUCUGGGGGCU	chr16:85659318-85659579(+)$1	261	112	140	10.3519
GCGGGCCUUUGCUCUGGGAGGCCGGCGC	chr16:85673507-85673818(+)$1	311	90	118	12.9873
AGGCUGCGCCCUGAGAGGCACUACAGCC	chr19:45650191-45650433(+)$1	242	210	238	11.6148
GUGCUCGCUGAACAAACAGGGAAACGUG	chr4:1239088-1239321(-)$1	233	196	224	12.4197
UAGUCUACCCCUCCCAGGCUGGGCUGUA	chr2:219140918-219141179(-)$1	261	22	50	13.2840
CACUUUGAUCUUAUUUGAUCGGAUCGUG	chr1:109642813-109643021(+)$1	208	173	201	13.2657
caccgcgcuccagucugggcgacaguga	chr21:46494070-46494373(+)$1	303	59	87	11.3281
GACAAGGAUCUUAGUUGAUAUUUUGGGC	chr1:150547231-150547489(-)$1	258	15	43	9.9982
guguaauuauacugucuguaguuauuaa	chr7:148518045-148518294(-)$1	249	3	31	10.0785
UGAGCAGGUGCGGAGCAGGGUUCAUUAC	chr22:50039613-50039842(-)$1	229	102	130	9.2352
GGCCUUCCGGAAGGAGCCGGGGAGGGAG	chr16:88523247-88523498(+)$1	251	74	102	11.8492
GUCCAGGCCAGGGUAGUGGAUGGAAAGU	chr22:50010538-50010789(-)$1	251	138	166	12.0261
GAGGCCCUGGUCAUUUCCACGCCCAUCC	chr2:97534278-97534579(-)$1	301	210	238	13.2175
GGGAAUGGGUGGUGGGACCAGGGACCCA	chr17:56408168-56408399(-)$1	231	100	128	8.5776
CACCCCAGUCACACAGGAUAAAGGGCUG	chr3:128211110-128211357(+)$1	247	139	167	13.5634
UCUGGGGGCCCCAGGAGGUCCCUACUAG	chr22:50034924-50035177(-)$1	253	129	157	13.2471
AUUUUUGUUCUUCCCUGUGUGAUUUUUG	chr19:17389828-17390122(+)$1	294	260	288	11.1266
AGUAUACAAGCUCCAAGUAAAUGUGUGC	chr6:26216336-26216572(-)$1	236	62	90	10.7421
CCACAGGAGUCCCUAUAGGGCAUGGGGU	chr22:50024529-50024753(-)$1	224	114	142	8.1164
CAUGGUGGAGAGAGACCUGCACUAUAUU	chr5:136984407-136984617(-)$1	210	126	154	10.6992
UCUGCCUGGACGUGAUCUGCAGGCAGCG	chr19:1433154-1433391(+)$1	237	24	52	9.1415
GAGCGUCAGUGGCCCGGCUGGCUUUCCC	chr21:46850521-46850787(+)$1	266	129	157	11.3655
CUUAGUUUCCUUUUCUGUAACGUGGGGC	chr16:85666887-85667138(+)$1	251	77	105	11.9262
GAUGGAAGGCAUUUACGCUGACAUCCCU	chr17:80445688-80445951(+)$1	263	170	198	11.4798
GCACUGCACGUUCAUGAACCAGCCAGGC	chr17:79526315-79526540(-)$1	225	189	217	8.4074
CCCUGUGCCGGGGGAGGGACGGCGCGCG	chr17:7476527-7476763(+)$1	236	22	50	9.1692
UGAUAUUCACGUCACAGUGAUUGGAAGA	chr17:62501969-62502234(-)$1	265	186	214	11.1178
aaagguggcacgucggacgugccaccuu	chr6:16266446-16266651(+)$1	205	156	184	11.9620

#DB
((((((((((......)).))))))).)	chr3:196662290-196662622(-)$1	1	235	263	13.1446
..(((((((((.....))))))).))..	chr16:583980-584231(+)$1	1	205	233	8.5188
(((.((.(((......))).)).))).)	chr19:28931886-28932142(-)$1	1	41	69	12.7884
((((((.(((......)))..)))))).	chr6:27860322-27860574(-)$1	1	150	178	12.2588
(((.((((((......))).))).))))	chr17:27877931-27878180(+)$1	1	163	191	12.7755
((((((((((......)))).).)))))	chr7:1493466-1493733(-)$1	1	136	164	10.9164
((((((((((......)))).)))))).	chr1:149857582-149857836(-)$1	1	41	69	9.6507
((.((((((((....).))))))).)))	chr6:16266199-16266408(+)$1	1	50	78	10.1717
((((((.(((....))).))))))))))	chr16:88520653-88520941(+)$1	1	184	212	9.4846
((.(.((.((......)).)).).))))	chrM:14201-14422(-)$1	1	173	201	11.3701
((.((..((((......))).)..)).)	chr11:67817006-67817250(+)$1	1	176	204	11.4378
((.(((((((......).)))))).)).	chr7:1892853-1893160(-)$1	1	245	273	11.3033
((((.(.(((......)))).)))))))	chr17:73837031-73837303(-)$1	1	127	155	13.8927
.(((((((((....)))))))))..)))	chr1:12089605-12089925(+)$1	1	154	182	9.5154
)).(((((((((((...)))))))))))	chr19:932958-933220(+)$1	1	92	120	9.5007
(....(((((......)))))..)))).	chr16:88528759-88529008(+)$1	1	117	145	10.2671
((((((((((......))))))))))((	chr5:53674378-53674654(+)$1	1	135	163	14.6124
(((.(((.((......))))))))))..	chr13:92000036-92000292(+)$1	1	141	169	11.5820
(((((((((.(((...))).))))))))	chr17:80851019-80851255(+)$1	1	11	39	10.6832
(.((((((((......)))))))).).)	chr16:88528563-88528807(+)$1	1	135	163	10.9324
((..(((.((......)).)))..))))	chr4:904680-904952(-)$1	1	56	84	11.8194
(((((((((((....)))))))))))((	chr6:31937182-31937470(+)$1	1	127	155	11.2047
((.(((((((.(....).))))))).))	chr16:85659318-85659579(+)$1	1	112	140	10.3519
((.(((((((......))))))).))((	chr16:85673507-85673818(+)$1	1	90	118	12.9873
.(((((.(((......)))....)))))	chr19:45650191-45650433(+)$1	1	210	238	11.6148
((..((.(((......))).)).)))))	chr4:1239088-1239321(-)$1	1	196	224	12.4197
(((((((.((......)).))))))).)	chr2:219140918-219141179(-)$1	1	22	50	13.2840
(..(((((((......)))))))..)))	chr1:109642813-109643021(+)$1	1	173	201	13.2657
(((.((((((......))))).).))).	chr21:46494070-46494373(+)$1	1	59	87	11.3281
).((((((((......))).))))).((	chr1:150547231-150547489(-)$1	1	15	43	9.9982
(((((((((((.....)))))))))..)	chr7:148518045-148518294(-)$1	1	3	31	10.0785
)))))))))))((((((((((((((.((	chr22:50039613-50039842(-)$1	1	102	130	9.2352
))))))((((......))))((((((((	chr16:88523247-88523498(+)$1	1	74	102	11.8492
(((((..(((......))).))))...)	chr22:50010538-50010789(-)$1	1	138	166	12.0261
(.(((..(((......))).))))))))	chr2:97534278-97534579(-)$1	1	210	238	13.2175
((.(.((((((((...)))....)))))	chr17:56408168-56408399(-)$1	1	100	128	8.5776
((.(((.(((......)))...))).))	chr3:128211110-128211357(+)$1	1	139	167	13.5634
((((((((((......)))))))...))	chr22:50034924-50035177(-)$1	1	129	157	13.2471
(..((....(......)...))..))..	chr19:17389828-17390122(+)$1	1	260	288	11.1266
((((((((.(((...)))...)))))))	chr6:26216336-26216572(-)$1	1	62	90	10.7421
((.(.((((((((((.((((((.(((((	chr22:50024529-50024753(-)$1	1	114	142	8.1164
.((((((.((......)).)))))).))	chr5:136984407-136984617(-)$1	1	126	154	10.6992
.(((((((.(.(....)).))))))))(	chr19:1433154-1433391(+)$1	1	24	52	9.1415
(((.((((((......)))))).)))))	chr21:46850521-46850787(+)$1	1	129	157	11.3655
(((((((..(......).))).))))))	chr16:85666887-85667138(+)$1	1	77	105	11.9262
((((...(((......)))..))))(((	chr17:80445688-80445951(+)$1	1	170	198	11.4798
((.((((..(((....)))..).)))))	chr17:79526315-79526540(-)$1	1	189	217	8.4074
((.(((((((.........))))))).)	chr17:7476527-7476763(+)$1	1	22	50	9.1692
(..((.((((......)))).))...))	chr17:62501969-62502234(-)$1	1	186	214	11.1178
(((((((((((((...))))))))))))	chr6:16266446-16266651(+)$1	1	156	184	11.9620

#PSSM
d : 0.18	b : 0.18	e : 0.16	c : 0.10	f : 0.08	g : 0.08	= : 0.06	! : 0.04	i : 0.04	a : 0.02	: : 0.02	& : 0.02	[ : 0.02	
b : 0.16	g : 0.12	d : 0.12	e : 0.12	c : 0.10	f : 0.10	! : 0.08	i : 0.06	= : 0.06	[ : 0.04	# : 0.02	: : 0.02	
[ : 0.21	g : 0.12	e : 0.10	i : 0.10	! : 0.10	f : 0.08	d : 0.08	c : 0.06	= : 0.06	b : 0.02	: : 0.02	# : 0.02	h : 0.02	
g : 0.23	[ : 0.10	f : 0.10	i : 0.10	b : 0.08	= : 0.08	e : 0.06	a : 0.06	c : 0.06	! : 0.04	d : 0.04	# : 0.02	h : 0.02	
g : 0.23	c : 0.14	b : 0.10	f : 0.10	i : 0.10	[ : 0.08	= : 0.08	e : 0.06	# : 0.02	h : 0.02	a : 0.02	d : 0.02	" : 0.02	
g : 0.23	c : 0.12	f : 0.10	i : 0.10	= : 0.10	e : 0.10	b : 0.06	! : 0.06	a : 0.04	h : 0.02	# : 0.02	" : 0.02	[ : 0.02	
g : 0.19	[ : 0.14	i : 0.10	= : 0.10	c : 0.08	d : 0.08	e : 0.08	! : 0.06	f : 0.06	b : 0.02	h : 0.02	# : 0.02	" : 0.02	a : 0.02	
c : 0.23	g : 0.18	[ : 0.10	i : 0.10	= : 0.10	d : 0.08	e : 0.06	f : 0.04	! : 0.04	a : 0.02	h : 0.02	# : 0.02	
c : 0.25	g : 0.14	b : 0.12	= : 0.10	d : 0.08	i : 0.08	e : 0.06	f : 0.04	[ : 0.04	! : 0.04	h : 0.02	# : 0.02	
c : 0.30	g : 0.14	b : 0.12	= : 0.10	d : 0.08	a : 0.08	i : 0.06	e : 0.06	[ : 0.02	h : 0.02	f : 0.02	
o : 0.64	c : 0.10	= : 0.08	m : 0.04	[ : 0.04	i : 0.04	g : 0.02	a : 0.02	r : 0.02	
o : 0.66	m : 0.08	= : 0.08	c : 0.08	n : 0.04	a : 0.04	r : 0.02	
o : 0.66	m : 0.14	= : 0.08	n : 0.04	c : 0.04	l : 0.02	r : 0.02	
o : 0.66	m : 0.14	l : 0.08	= : 0.06	n : 0.04	r : 0.02	
o : 0.66	m : 0.10	l : 0.10	n : 0.04	= : 0.04	c : 0.02	i : 0.02	r : 0.02	
o : 0.66	l : 0.08	m : 0.06	n : 0.04	c : 0.04	= : 0.04	a : 0.02	i : 0.02	[ : 0.02	r : 0.02	
c : 0.32	b : 0.12	a : 0.10	g : 0.08	d : 0.08	= : 0.08	i : 0.04	e : 0.04	f : 0.04	] : 0.02	o : 0.02	l : 0.02	h : 0.02	r : 0.02	
c : 0.32	b : 0.12	g : 0.10	= : 0.10	d : 0.08	] : 0.08	i : 0.04	e : 0.04	f : 0.04	h : 0.02	3 : 0.02	a : 0.02	r : 0.02	
c : 0.34	g : 0.14	] : 0.12	= : 0.10	d : 0.08	f : 0.06	i : 0.04	e : 0.04	3 : 0.04	h : 0.02	r : 0.02	
g : 0.21	] : 0.14	= : 0.10	d : 0.08	c : 0.08	f : 0.08	2 : 0.06	3 : 0.06	i : 0.04	e : 0.04	4 : 0.04	b : 0.02	a : 0.02	h : 0.02	
g : 0.21	c : 0.12	] : 0.10	= : 0.10	b : 0.08	f : 0.08	2 : 0.06	i : 0.06	e : 0.06	4 : 0.04	3 : 0.04	h : 0.02	d : 0.02	
g : 0.23	f : 0.12	= : 0.10	b : 0.08	c : 0.08	i : 0.08	a : 0.06	] : 0.06	e : 0.04	4 : 0.04	d : 0.04	2 : 0.02	h : 0.02	3 : 0.02	
g : 0.23	] : 0.10	f : 0.10	= : 0.10	c : 0.08	2 : 0.08	i : 0.08	a : 0.04	e : 0.04	4 : 0.04	d : 0.04	h : 0.02	[ : 0.02	b : 0.02	
g : 0.19	e : 0.14	f : 0.12	] : 0.10	2 : 0.10	= : 0.10	c : 0.06	d : 0.06	i : 0.06	3 : 0.04	h : 0.02	
g : 0.18	e : 0.14	c : 0.10	f : 0.10	= : 0.10	b : 0.08	d : 0.08	] : 0.06	i : 0.06	3 : 0.06	2 : 0.04	
g : 0.14	e : 0.14	c : 0.12	b : 0.10	d : 0.10	f : 0.08	= : 0.08	] : 0.06	3 : 0.06	i : 0.04	a : 0.02	: : 0.02	2 : 0.02	[ : 0.02	
d : 0.18	e : 0.18	] : 0.12	c : 0.10	f : 0.08	2 : 0.06	g : 0.06	b : 0.04	= : 0.04	i : 0.04	h : 0.04	4 : 0.02	3 : 0.02	a : 0.02	
e : 0.23	d : 0.19	c : 0.10	h : 0.06	] : 0.06	g : 0.06	2 : 0.04	= : 0.04	i : 0.04	f : 0.04	b : 0.04	3 : 0.02	: : 0.02	4 : 0.02	B : 0.02	

#score	560.1311171142501
#seq	50
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_UTR_m3_run1.txt

#BEAR
::ddddoooooodddd	chr22:20114309-20114568(+)$1	259	110	126	12.2039
dddcccooooooccc]	chr20:398018-398277(+)$1	259	210	226	10.9703
!!ddddoooooodddd	chr20:43561532-43561819(+)$1	287	246	262	13.5809
d:ddddoooooodddd	chr11:710256-710523(+)$1	267	169	185	12.6232
Cddddaooooooa]dd	chr9:139754179-139754448(+)$1	269	129	145	11.0929
b!!cccooooooccc2	chr20:62326269-62326524(+)$1	255	63	79	10.8771
BBddddoooooodddd	chr2:220077684-220077933(-)$1	249	191	207	12.2649
"""cccooooooccc4	chr2:234366775-234367052(+)$1	277	9	25	11.0878
dd[cccoooooocccd	chr8:145690353-145690632(-)$1	279	79	95	10.9348
##ddddoooooodddd	chr11:64815104-64815395(-)$1	291	158	174	13.4879
deeeeeooooooeeee	chr16:16255305-16255577(-)$1	272	180	196	10.1668
!!ddddoooooodddd	chr8:48625901-48626204(+)$1	303	81	97	13.5809
bb[cccooooooccc]	chr16:89959993-89960247(+)$1	254	185	201	10.6097
::ddddoooooodddd	chr16:30764567-30764816(+)$1	249	61	77	12.2039
E:ddddoooooodddd	chr17:79867374-79867623(-)$1	249	203	219	12.0975
g[ddddoooooodddd	chr1:70697383-70697667(+)$1	284	229	245	13.3131
!!ddddoooooodddd	chr12:46751923-46752165(-)$1	242	4	20	13.5809
ggddddoooooodddd	chr15:25224523-25224802(+)$1	279	211	227	13.0046
::ddddoooooodddd	chr2:174229350-174229657(+)$1	307	158	174	12.2039
##ddddoooooodddd	chr11:57561329-57561607(+)$1	278	227	243	13.4879
d!!cccooooooccc]	chr9:116298921-116299165(+)$1	244	218	234	11.0988
::ddddoooooodddd	chr11:710212-710456(+)$1	244	213	229	12.2039
eeddddoooooodddd	chr14:21546188-21546439(+)$1	251	154	170	12.8549
!!ddddoooooodddd	chr12:46751965-46752209(-)$1	244	48	64	13.5809
::ddddoooooodddd	chr17:7080518-7080796(-)$1	278	21	37	12.2039
f[ddddoooooodddd	chr14:24911525-24911779(-)$1	254	194	210	13.1410
::ddddoooooodddd	chr7:5434121-5434384(-)$1	263	39	55	12.2039
geeeeeooooooeeee	chr17:17720337-17720596(-)$1	259	113	129	10.1585
FFddddoooooodddd	chr7:76955422-76955742(-)$1	320	254	270	12.5030
f[ddddoooooodddd	chr1:8074381-8074635(-)$1	254	55	71	13.1410
::ddddoooooodddd	chr9:34648597-34648889(+)$1	292	208	224	12.2039
a[ddddoooooodddd	chr6:31936909-31937161(+)$1	252	179	195	13.4475
"""cccooooooccc3	chr11:72423477-72423757(-)$1	280	8	24	11.0360
h[ddddoooooodddd	chr20:62572441-62572709(-)$1	268	66	82	13.0336
deeeeeooooooeeee	chr22:32012575-32012832(+)$1	257	28	44	10.1668
h[ddddoooooodddd	chr20:62572509-62572775(-)$1	266	132	148	13.0336
""ddddoooooodddd	chr2:95823073-95823386(-)$1	313	221	237	13.5249
dddcccooooooccc]	chr17:7308204-7308475(+)$1	271	3	19	10.9703
i[cccaooooooa]cc	chr19:19101827-19102071(-)$1	244	150	166	10.3642
::ddddoooooodddd	chr19:15510100-15510386(-)$1	286	207	223	12.2039
e[ddddoooooodddd	chr7:925536-925794(+)$1	258	149	165	13.2230
bb[cccooooooccc]	chr1:45279155-45279415(+)$1	260	239	255	10.6097
ceeeeeooooooeeee	chr16:16259669-16259964(-)$1	295	2	18	10.2236
ddddddoooooodddd	chr16:2162855-2163118(-)$1	263	170	186	12.9468
dd[cccooooooccc]	chr10:121339402-121339674(-)$1	272	64	80	10.6007

#otherMatches

#Seq PSSM
AUGUGCUUGAAUGCAC	chr22:20114309-20114568(+)$1	259	110	126	12.2039
GCCCUGAUAUGACAGU	chr20:398018-398277(+)$1	259	210	226	10.9703
AGGCCUCCACCCAGGU	chr20:43561532-43561819(+)$1	287	246	262	13.5809
GAGGAAGAAGUAUUCC	chr11:710256-710523(+)$1	267	169	185	12.6232
GAGGGCUCACAUGUCC	chr9:139754179-139754448(+)$1	269	129	145	11.0929
UGGCCCUGGCGUGGGG	chr20:62326269-62326524(+)$1	255	63	79	10.8771
GACACUUGCCCUGGUG	chr2:220077684-220077933(-)$1	249	191	207	12.2649
ACAUGAAGCCCGUCAG	chr2:234366775-234367052(+)$1	277	9	25	11.0878
GACGUUCCCCCCAGCU	chr8:145690353-145690632(-)$1	279	79	95	10.9348
CCGAGACUAAAUUCUC	chr11:64815104-64815395(-)$1	291	158	174	13.4879
CCUGGGGAAUGGCCUG	chr16:16255305-16255577(-)$1	272	180	196	10.1668
ACUGCCAUUAUGGGCA	chr8:48625901-48626204(+)$1	303	81	97	13.5809
CUUUGCGUUUGAGCAC	chr16:89959993-89960247(+)$1	254	185	201	10.6097
AGCCUGAAGCCCCAGG	chr16:30764567-30764816(+)$1	249	61	77	12.2039
GACUACCUCAUCGUAG	chr17:79867374-79867623(-)$1	249	203	219	12.0975
ACUGUGCUUGCUUACG	chr1:70697383-70697667(+)$1	284	229	245	13.3131
gaucuaguguaaugga	chr12:46751923-46752165(-)$1	242	4	20	13.5809
CUGACUUGAUAUGGUC	chr15:25224523-25224802(+)$1	279	211	227	13.0046
CGUGCUUUGUUUAGCA	chr2:174229350-174229657(+)$1	307	158	174	12.2039
AUUCUUUGGCUCAAGA	chr11:57561329-57561607(+)$1	278	227	243	13.4879
GCCUGUCGGAGAACAU	chr9:116298921-116299165(+)$1	244	218	234	11.0988
GAGGAAGAAGUAUUCC	chr11:710212-710456(+)$1	244	213	229	12.2039
UAAGGCUAUGUCGCCU	chr14:21546188-21546439(+)$1	251	154	170	12.8549
gaucuaguguaaugga	chr12:46751965-46752209(-)$1	244	48	64	13.5809
CCGCAUUUCUUCAUGU	chr17:7080518-7080796(-)$1	278	21	37	12.2039
CUCCCGAAAGCCCGGG	chr14:24911525-24911779(-)$1	254	194	210	13.1410
UCAGCUCCACACAGCU	chr7:5434121-5434384(-)$1	263	39	55	12.2039
GAGCUGUGUCCCCAGC	chr17:17720337-17720596(-)$1	259	113	129	10.1585
AACCCUAAGACAAGGG	chr7:76955422-76955742(-)$1	320	254	270	12.5030
ACAGCAGUCAAGUGUU	chr1:8074381-8074635(-)$1	254	55	71	13.1410
CUGGGCAACAUGGCCC	chr9:34648597-34648889(+)$1	292	208	224	12.2039
GAUUGGUGAGGUCCAG	chr6:31936909-31937161(+)$1	252	179	195	13.4475
GAGUGUGAGGAAACAG	chr11:72423477-72423757(-)$1	280	8	24	11.0360
GUGACGCACAGCCGUC	chr20:62572441-62572709(-)$1	268	66	82	13.0336
GCUCCUGCAGCUGGGA	chr22:32012575-32012832(+)$1	257	28	44	10.1668
GUGACGCACAGCCGUC	chr20:62572509-62572775(-)$1	266	132	148	13.0336
UGCUCUUCCUCCAGAG	chr2:95823073-95823386(-)$1	313	221	237	13.5249
UGCGGCUGCUCCGCCG	chr17:7308204-7308475(+)$1	271	3	19	10.9703
AAGUGCUCUCUCGCCA	chr19:19101827-19102071(-)$1	244	150	166	10.3642
AGUUGCAGGCAGGCAA	chr19:15510100-15510386(-)$1	286	207	223	12.2039
GUGGCAGGUACAUGUC	chr7:925536-925794(+)$1	258	149	165	13.2230
GCACCCUGCCCCGGGA	chr1:45279155-45279415(+)$1	260	239	255	10.6097
gcacuucaacaugggu	chr16:16259669-16259964(-)$1	295	2	18	10.2236
ACGUGAGCAACGUCAC	chr16:2162855-2163118(-)$1	263	170	186	12.9468
GCUCACAAUACAGUGU	chr10:121339402-121339674(-)$1	272	64	80	10.6007

#DB
..((((......))))	chr22:20114309-20114568(+)$1	1	110	126	12.2039
((((((......))).	chr20:398018-398277(+)$1	1	210	226	10.9703
..((((......))))	chr20:43561532-43561819(+)$1	1	246	262	13.5809
).((((......))))	chr11:710256-710523(+)$1	1	169	185	12.6232
)(((((......).))	chr9:139754179-139754448(+)$1	1	129	145	11.0929
(..(((......))).	chr20:62326269-62326524(+)$1	1	63	79	10.8771
))((((......))))	chr2:220077684-220077933(-)$1	1	191	207	12.2649
...(((......))).	chr2:234366775-234367052(+)$1	1	9	25	11.0878
((.(((......))))	chr8:145690353-145690632(-)$1	1	79	95	10.9348
..((((......))))	chr11:64815104-64815395(-)$1	1	158	174	13.4879
)(((((......))))	chr16:16255305-16255577(-)$1	1	180	196	10.1668
..((((......))))	chr8:48625901-48626204(+)$1	1	81	97	13.5809
((.(((......))).	chr16:89959993-89960247(+)$1	1	185	201	10.6097
..((((......))))	chr16:30764567-30764816(+)$1	1	61	77	12.2039
).((((......))))	chr17:79867374-79867623(-)$1	1	203	219	12.0975
(.((((......))))	chr1:70697383-70697667(+)$1	1	229	245	13.3131
..((((......))))	chr12:46751923-46752165(-)$1	1	4	20	13.5809
))((((......))))	chr15:25224523-25224802(+)$1	1	211	227	13.0046
..((((......))))	chr2:174229350-174229657(+)$1	1	158	174	12.2039
..((((......))))	chr11:57561329-57561607(+)$1	1	227	243	13.4879
(..(((......))).	chr9:116298921-116299165(+)$1	1	218	234	11.0988
..((((......))))	chr11:710212-710456(+)$1	1	213	229	12.2039
((((((......))))	chr14:21546188-21546439(+)$1	1	154	170	12.8549
..((((......))))	chr12:46751965-46752209(-)$1	1	48	64	13.5809
..((((......))))	chr17:7080518-7080796(-)$1	1	21	37	12.2039
(.((((......))))	chr14:24911525-24911779(-)$1	1	194	210	13.1410
..((((......))))	chr7:5434121-5434384(-)$1	1	39	55	12.2039
)(((((......))))	chr17:17720337-17720596(-)$1	1	113	129	10.1585
))((((......))))	chr7:76955422-76955742(-)$1	1	254	270	12.5030
(.((((......))))	chr1:8074381-8074635(-)$1	1	55	71	13.1410
..((((......))))	chr9:34648597-34648889(+)$1	1	208	224	12.2039
(.((((......))))	chr6:31936909-31937161(+)$1	1	179	195	13.4475
...(((......))).	chr11:72423477-72423757(-)$1	1	8	24	11.0360
(.((((......))))	chr20:62572441-62572709(-)$1	1	66	82	13.0336
((((((......))))	chr22:32012575-32012832(+)$1	1	28	44	10.1668
(.((((......))))	chr20:62572509-62572775(-)$1	1	132	148	13.0336
..((((......))))	chr2:95823073-95823386(-)$1	1	221	237	13.5249
((((((......))).	chr17:7308204-7308475(+)$1	1	3	19	10.9703
(.((((......).))	chr19:19101827-19102071(-)$1	1	150	166	10.3642
..((((......))))	chr19:15510100-15510386(-)$1	1	207	223	12.2039
(.((((......))))	chr7:925536-925794(+)$1	1	149	165	13.2230
((.(((......))).	chr1:45279155-45279415(+)$1	1	239	255	10.6097
((((((......))))	chr16:16259669-16259964(-)$1	1	2	18	10.2236
))((((......))))	chr16:2162855-2163118(-)$1	1	170	186	12.9468
((.(((......))).	chr10:121339402-121339674(-)$1	1	64	80	10.6007

#PSSM
d : 0.20	: : 0.17	! : 0.08	b : 0.06	" : 0.06	g : 0.06	# : 0.04	e : 0.04	f : 0.04	h : 0.04	C : 0.02	B : 0.02	E : 0.02	F : 0.02	a : 0.02	i : 0.02	c : 0.02	
: : 0.22	[ : 0.17	d : 0.13	! : 0.13	e : 0.11	" : 0.06	# : 0.04	b : 0.04	B : 0.02	g : 0.02	F : 0.02	
d : 0.71	[ : 0.08	e : 0.08	! : 0.04	" : 0.04	c : 0.02	
d : 0.66	c : 0.24	e : 0.08	
d : 0.66	c : 0.24	e : 0.08	
d : 0.64	c : 0.22	e : 0.08	a : 0.04	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.64	c : 0.22	e : 0.08	a : 0.04	
d : 0.64	c : 0.22	e : 0.08	] : 0.04	
d : 0.66	c : 0.24	e : 0.08	
d : 0.68	] : 0.13	e : 0.08	2 : 0.02	4 : 0.02	3 : 0.02	c : 0.02	

#score	544.0543645236559
#seq	45
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_UTR_m2_run2.txt

#BEAR
[bbtttttttttttbbee	chr4:1019607-1019847(+)$1	240	185	203	21.1409
eeeuuuuuuuuuuuueee	chr11:2153292-2153498(-)$1	206	50	68	22.1561
a!!attttttttttta22	chr2:17836581-17836888(+)$1	307	197	215	21.2977
"bbuuuuuuuuuuuubb3	chr11:2153230-2153432(-)$1	202	148	166	22.8739
iiiuuuuuuuuuuuuiii	chr1:206635118-206635334(+)$1	216	155	173	22.1673
:bbuuuuuuuuuuuubb:	chr11:2153180-2153383(-)$1	203	99	117	21.2947
ddddtttttttttttddd	chr5:42800117-42800404(-)$1	287	193	211	20.6201
"bbuuuuuuuuuuuubb3	chr11:2153188-2153391(-)$1	203	107	125	22.8739
ddddtttttttttttddd	chr2:25963568-25963831(-)$1	263	55	73	20.6201
iiiuuuuuuuuuuuuiii	chr1:206635134-206635370(+)$1	236	139	157	22.1673
eeeuuuuuuuuuuuueee	chr11:2153362-2153572(-)$1	210	124	142	22.1561
cccuuuuuuuuuuuuccc	chr3:50337646-50337966(-)$1	320	290	308	22.0867
:bbuuuuuuuuuuuubb:	chr11:2153117-2153323(-)$1	206	39	57	21.2947
eeeettttttttttteee	chr10:27828258-27828564(+)$1	306	188	206	21.5737
eeeettttttttttteee	chr11:2152609-2152812(-)$1	203	53	71	21.5737
eeeettttttttttteee	chr11:2152612-2152818(-)$1	206	59	77	21.5737
:bbuuuuuuuuuuuubb:	chr11:2153164-2153374(-)$1	210	90	108	21.2947
eeeettttttttttteee	chr11:2152581-2152784(-)$1	203	25	43	21.5737
===uuuuuuuuuuuu===	chr11:2152310-2152519(-)$1	209	88	106	22.3940
cccuuuuuuuuuuuuccc	chr17:4618894-4619118(+)$1	224	163	181	22.0867
eeeuuuuuuuuuuuueee	chr11:2153384-2153591(-)$1	207	143	161	22.1561
"bbuuuuuuuuuuuubb3	chr11:2153191-2153393(-)$1	202	109	127	22.8739
eeeettttttttttteee	chr10:102760765-102761028(+)$1	263	40	58	21.5737
eeeuuuuuuuuuuuueee	chr11:2153266-2153473(-)$1	207	25	43	22.1561
[bbtttttttttttbbee	chr10:102760891-102761172(+)$1	281	12	30	21.1409
:bbuuuuuuuuuuuubb:	chr11:2153147-2153353(-)$1	206	69	87	21.2947
eeeettttttttttteee	chr11:2152600-2152806(-)$1	206	47	65	21.5737
:bbuuuuuuuuuuuubb:	chr11:2153141-2153347(-)$1	206	63	81	21.2947
!bbuuuuuuuuuuuubb2	chr13:113773707-113773932(+)$1	225	195	213	22.6947
"ccctttttttttttccc	chr20:52107139-52107477(-)$1	338	32	50	21.5560
"bbuuuuuuuuuuuubb3	chr11:2153257-2153461(-)$1	204	177	195	22.8739
fffuuuuuuuuuuuufff	chr14:31085698-31085959(+)$1	261	168	186	21.4520
iiiuuuuuuuuuuuuiii	chr1:206635191-206635419(+)$1	228	82	100	22.1673
ggggtttttttttttggg	chr18:56416870-56417118(+)$1	248	144	162	21.0630
bbvvvvvvvvvvvvvbb:	chr11:2152716-2152918(-)$1	202	95	113	21.2181
cccvvvvvvvvvvvvvcc	chr21:46915513-46915741(+)$1	228	156	174	21.3201
fffuuuuuuuuuuuufff	chr12:124081726-124081965(+)$1	239	167	185	21.4520
iiiwwwwwwwwwwwwwwi	chr18:673285-673555(-)$1	270	227	245	20.1418
bbvvvvvvvvvvvvvbb:	chr8:144916118-144916398(-)$1	280	230	248	21.2181
cccuuuuuuuuuuuuccc	chr17:4618993-4619228(+)$1	235	64	82	22.0867
===uuuuuuuuuuuu===	chr11:2152335-2152539(-)$1	204	108	126	22.3940
===uuuuuuuuuuuu===	chr11:2152306-2152509(-)$1	203	78	96	22.3940
ddduuuuuuuuuuuuddd	chr22:20052423-20052725(+)$1	302	263	281	21.3384
eeeettttttttttteee	chrX:123045814-123046146(+)$1	332	189	207	21.5737
eeeuuuuuuuuuuuueee	chr21:46915771-46915976(+)$1	205	146	164	22.1561
===uuuuuuuuuuuu===	chr11:2152379-2152586(-)$1	207	155	173	22.3940
cccvvvvvvvvvvvvvcc	chr6:44796701-44796983(-)$1	282	106	124	21.3201
cccuuuuuuuuuuuuccc	chrX:63409169-63409425(-)$1	256	123	141	22.0867
"bbuuuuuuuuuuuubb3	chr11:2153238-2153443(-)$1	205	159	177	22.8739
bbvvvvvvvvvvvvvbb:	chr11:2152646-2152848(-)$1	202	25	43	21.2181
eeeuuuuuuuuuuuueee	chr11:2153274-2153492(-)$1	218	44	62	22.1561
eeeettttttttttteee	chr11:2152670-2152872(-)$1	202	113	131	21.5737
===uuuuuuuuuuuu===	chr11:2152321-2152534(-)$1	213	103	121	22.3940
:bbuuuuuuuuuuuubb:	chr11:2153107-2153317(-)$1	210	33	51	21.2947
hhhvvvvvvvvvvvvvhh	chr3:188593334-188593627(+)$1	293	153	171	20.3613
cccuuuuuuuuuuuuccc	chr17:4618931-4619193(+)$1	262	126	144	22.0867
[bbuuuuuuuuuuuubb]	chr13:113539267-113539492(+)$1	225	66	84	22.8179
hhhvvvvvvvvvvvvvhh	chr1:160185922-160186236(-)$1	314	216	234	20.3613
bbvvvvvvvvvvvvvbb:	chr11:2152680-2152882(-)$1	202	59	77	21.2181
:bbuuuuuuuuuuuubb:	chr11:2153128-2153335(-)$1	207	51	69	21.2947
:bbuuuuuuuuuuuubb:	chr11:2153085-2153288(-)$1	203	4	22	21.2947
eeeettttttttttteee	chr11:2152708-2152913(-)$1	205	154	172	21.5737
eeeuuuuuuuuuuuueee	chr3:140683826-140684084(+)$1	258	91	109	22.1561
bbvvvvvvvvvvvvvbb:	chr11:2152672-2152876(-)$1	204	53	71	21.2181
eeeettttttttttteee	chr11:2152705-2152908(-)$1	203	149	167	21.5737
"bbuuuuuuuuuuuubb3	chr11:2153223-2153428(-)$1	205	144	162	22.8739
"bbuuuuuuuuuuuubb3	chr11:2153197-2153400(-)$1	203	116	134	22.8739
bbvvvvvvvvvvvvvbb:	chr11:2152648-2152857(-)$1	209	34	52	21.2181
!bbuuuuuuuuuuuubb2	chr19:41938681-41938952(-)$1	271	163	181	22.6947
eeeettttttttttteee	chr11:2152570-2152772(-)$1	202	13	31	21.5737
bbvvvvvvvvvvvvvbb]	chr10:111967264-111967543(+)$1	279	81	99	21.9396
bbvvvvvvvvvvvvvbb:	chr11:2152718-2152921(-)$1	203	98	116	21.2181
:bbuuuuuuuuuuuubb:	chr11:2153155-2153357(-)$1	202	73	91	21.2947
eeeettttttttttteee	chr11:2152585-2152794(-)$1	209	35	53	21.5737
eeeettttttttttteee	chr11:2152691-2152893(-)$1	202	134	152	21.5737
fffftttttttttttfff	chr20:6018650-6018922(+)$1	272	75	93	20.7530
eeeettttttttttteee	chr9:15465258-15465526(+)$1	268	104	122	21.5737

#otherMatches

#Seq PSSM
agucacacacacacgcag	chr4:1019607-1019847(+)$1	240	185	203	21.1409
AUGAAAACCAAAAUCCAU	chr11:2153292-2153498(-)$1	206	50	68	22.1561
GGACUACCUAUAAAUGGA	chr2:17836581-17836888(+)$1	307	197	215	21.2977
agcacacacacaaacgca	chr11:2153230-2153432(-)$1	202	148	166	22.8739
GUUUUUCUAGUCUCUGGC	chr1:206635118-206635334(+)$1	216	155	173	22.1673
agcacacacacaaacgca	chr11:2153180-2153383(-)$1	203	99	117	21.2947
ACUCUUCUAAAACUUGAG	chr5:42800117-42800404(-)$1	287	193	211	20.6201
agcacacacacaaacgca	chr11:2153188-2153391(-)$1	203	107	125	22.8739
CCUGUUUUGACCUCCCAG	chr2:25963568-25963831(-)$1	263	55	73	20.6201
GUUUUUCUAGUCUCUGGC	chr1:206635134-206635370(+)$1	236	139	157	22.1673
AUGAAAACCAAAAUCCAU	chr11:2153362-2153572(-)$1	210	124	142	22.1561
AGGUCAUAGACAAUUCCU	chr3:50337646-50337966(-)$1	320	290	308	22.0867
agcacacacacaaacgca	chr11:2153117-2153323(-)$1	206	39	57	21.2947
AUAUGCUUUUACUAAAUA	chr10:27828258-27828564(+)$1	306	188	206	21.5737
CAUGCGCAGCACAUACAU	chr11:2152609-2152812(-)$1	203	53	71	21.5737
CAUGCGCAGCACAUACAU	chr11:2152612-2152818(-)$1	206	59	77	21.5737
agcacacacacaaacgca	chr11:2153164-2153374(-)$1	210	90	108	21.2947
CAUGCGCAGCACAUACAU	chr11:2152581-2152784(-)$1	203	25	43	21.5737
CCCGUAGGGUGGGCGGGG	chr11:2152310-2152519(-)$1	209	88	106	22.3940
GAGAUAAAGGAGCAGCUC	chr17:4618894-4619118(+)$1	224	163	181	22.0867
AUGAAAACCAAAAUCCAU	chr11:2153384-2153591(-)$1	207	143	161	22.1561
agcacacacacaaacgca	chr11:2153191-2153393(-)$1	202	109	127	22.8739
GCUCCCCCCACCAAUGGG	chr10:102760765-102761028(+)$1	263	40	58	21.5737
AUGAAAACCAAAAUCCAU	chr11:2153266-2153473(-)$1	207	25	43	22.1561
AGUCACACACAAACACAG	chr10:102760891-102761172(+)$1	281	12	30	21.1409
agcacacacacaaacgca	chr11:2153147-2153353(-)$1	206	69	87	21.2947
CAUGCGCAGCACAUACAU	chr11:2152600-2152806(-)$1	206	47	65	21.5737
agcacacacacaaacgca	chr11:2153141-2153347(-)$1	206	63	81	21.2947
acacagauauacacaUGG	chr13:113773707-113773932(+)$1	225	195	213	22.6947
CAGAACAUCAUAGACUCU	chr20:52107139-52107477(-)$1	338	32	50	21.5560
agcacacacacaaacgca	chr11:2153257-2153461(-)$1	204	177	195	22.8739
UAUGAAUAUAAAGGAAUA	chr14:31085698-31085959(+)$1	261	168	186	21.4520
GUUUUUCUAGUCUCUGGC	chr1:206635191-206635419(+)$1	228	82	100	22.1673
ggaauaaaaggaaucuuc	chr18:56416870-56417118(+)$1	248	144	162	21.0630
gcacacaugaacacagca	chr11:2152716-2152918(-)$1	202	95	113	21.2181
augcccauacacuccaca	chr21:46915513-46915741(+)$1	228	156	174	21.3201
AUCUCCACUUAAAUUGAU	chr12:124081726-124081965(+)$1	239	167	185	21.4520
GAAAUUCACCAACCUUCU	chr18:673285-673555(-)$1	270	227	245	20.1418
GCAAGACUUACUAACGCA	chr8:144916118-144916398(-)$1	280	230	248	21.2181
GAGAUAAAGGAGCAGCUC	chr17:4618993-4619228(+)$1	235	64	82	22.0867
CCCGUAGGGUGGGCGGGG	chr11:2152335-2152539(-)$1	204	108	126	22.3940
CCCGUAGGGUGGGCGGGG	chr11:2152306-2152509(-)$1	203	78	96	22.3940
CAGUAGGUCUUUGUUCUG	chr22:20052423-20052725(+)$1	302	263	281	21.3384
gcccuucauaucuguggg	chrX:123045814-123046146(+)$1	332	189	207	21.5737
gugcacccauauacacac	chr21:46915771-46915976(+)$1	205	146	164	22.1561
CCCGUAGGGUGGGCGGGG	chr11:2152379-2152586(-)$1	207	155	173	22.3940
CUGUUCCUCCAAUCCCCA	chr6:44796701-44796983(-)$1	282	106	124	21.3201
GGCUAAACCUUUAGUGCC	chrX:63409169-63409425(-)$1	256	123	141	22.0867
agcacacacacaaacgca	chr11:2153238-2153443(-)$1	205	159	177	22.8739
gcacacaugaacacagca	chr11:2152646-2152848(-)$1	202	25	43	21.2181
AUGAAAACCAAAAUCCAU	chr11:2153274-2153492(-)$1	218	44	62	22.1561
CAUGCGCAGCACAUACAU	chr11:2152670-2152872(-)$1	202	113	131	21.5737
CCCGUAGGGUGGGCGGGG	chr11:2152321-2152534(-)$1	213	103	121	22.3940
agcacacacacaaacgca	chr11:2153107-2153317(-)$1	210	33	51	21.2947
AAUCACUGAAACAAAAAU	chr3:188593334-188593627(+)$1	293	153	171	20.3613
GAGAUAAAGGAGCAGCUC	chr17:4618931-4619193(+)$1	262	126	144	22.0867
AGCUCCUGcacacaugca	chr13:113539267-113539492(+)$1	225	66	84	22.8179
UUCUUUAUAGAAGAGUGA	chr1:160185922-160186236(-)$1	314	216	234	20.3613
gcacacaugaacacagca	chr11:2152680-2152882(-)$1	202	59	77	21.2181
agcacacacacaaacgca	chr11:2153128-2153335(-)$1	207	51	69	21.2947
agcacacacacaaacgca	chr11:2153085-2153288(-)$1	203	4	22	21.2947
CAUGCGCAGCACAUACAU	chr11:2152708-2152913(-)$1	205	154	172	21.5737
UGUUUGAAUUUGUUUGCA	chr3:140683826-140684084(+)$1	258	91	109	22.1561
gcacacaugaacacagca	chr11:2152672-2152876(-)$1	204	53	71	21.2181
CAUGCGCAGCACAUACAU	chr11:2152705-2152908(-)$1	203	149	167	21.5737
agcacacacacaaacgca	chr11:2153223-2153428(-)$1	205	144	162	22.8739
agcacacacacaaacgca	chr11:2153197-2153400(-)$1	203	116	134	22.8739
gcacacaugaacacagca	chr11:2152648-2152857(-)$1	209	34	52	21.2181
cgcacacacacacacgca	chr19:41938681-41938952(-)$1	271	163	181	22.6947
CAUGCGCAGCACAUACAU	chr11:2152570-2152772(-)$1	202	13	31	21.5737
GGUUCAUUCAAUCUCCca	chr10:111967264-111967543(+)$1	279	81	99	21.9396
gcacacaugaacacagca	chr11:2152718-2152921(-)$1	203	98	116	21.2181
agcacacacacaaacgca	chr11:2153155-2153357(-)$1	202	73	91	21.2947
CAUGCGCAGCACAUACAU	chr11:2152585-2152794(-)$1	209	35	53	21.5737
CAUGCGCAGCACAUACAU	chr11:2152691-2152893(-)$1	202	134	152	21.5737
CGUAUUCUCUGCUGUUAC	chr20:6018650-6018922(+)$1	272	75	93	20.7530
GUUUACUUUACUUUAAAA	chr9:15465258-15465526(+)$1	268	104	122	21.5737

#DB
.((...........))))	chr4:1019607-1019847(+)$1	1	185	203	21.1409
(((............)))	chr11:2153292-2153498(-)$1	1	50	68	22.1561
(..(...........)..	chr2:17836581-17836888(+)$1	1	197	215	21.2977
.((............)).	chr11:2153230-2153432(-)$1	1	148	166	22.8739
(((............)))	chr1:206635118-206635334(+)$1	1	155	173	22.1673
.((............)).	chr11:2153180-2153383(-)$1	1	99	117	21.2947
((((...........)))	chr5:42800117-42800404(-)$1	1	193	211	20.6201
.((............)).	chr11:2153188-2153391(-)$1	1	107	125	22.8739
((((...........)))	chr2:25963568-25963831(-)$1	1	55	73	20.6201
(((............)))	chr1:206635134-206635370(+)$1	1	139	157	22.1673
(((............)))	chr11:2153362-2153572(-)$1	1	124	142	22.1561
(((............)))	chr3:50337646-50337966(-)$1	1	290	308	22.0867
.((............)).	chr11:2153117-2153323(-)$1	1	39	57	21.2947
((((...........)))	chr10:27828258-27828564(+)$1	1	188	206	21.5737
((((...........)))	chr11:2152609-2152812(-)$1	1	53	71	21.5737
((((...........)))	chr11:2152612-2152818(-)$1	1	59	77	21.5737
.((............)).	chr11:2153164-2153374(-)$1	1	90	108	21.2947
((((...........)))	chr11:2152581-2152784(-)$1	1	25	43	21.5737
(((............)))	chr11:2152310-2152519(-)$1	1	88	106	22.3940
(((............)))	chr17:4618894-4619118(+)$1	1	163	181	22.0867
(((............)))	chr11:2153384-2153591(-)$1	1	143	161	22.1561
.((............)).	chr11:2153191-2153393(-)$1	1	109	127	22.8739
((((...........)))	chr10:102760765-102761028(+)$1	1	40	58	21.5737
(((............)))	chr11:2153266-2153473(-)$1	1	25	43	22.1561
.((...........))))	chr10:102760891-102761172(+)$1	1	12	30	21.1409
.((............)).	chr11:2153147-2153353(-)$1	1	69	87	21.2947
((((...........)))	chr11:2152600-2152806(-)$1	1	47	65	21.5737
.((............)).	chr11:2153141-2153347(-)$1	1	63	81	21.2947
.((............)).	chr13:113773707-113773932(+)$1	1	195	213	22.6947
.(((...........)))	chr20:52107139-52107477(-)$1	1	32	50	21.5560
.((............)).	chr11:2153257-2153461(-)$1	1	177	195	22.8739
(((............)))	chr14:31085698-31085959(+)$1	1	168	186	21.4520
(((............)))	chr1:206635191-206635419(+)$1	1	82	100	22.1673
((((...........)))	chr18:56416870-56417118(+)$1	1	144	162	21.0630
((.............)).	chr11:2152716-2152918(-)$1	1	95	113	21.2181
(((.............))	chr21:46915513-46915741(+)$1	1	156	174	21.3201
(((............)))	chr12:124081726-124081965(+)$1	1	167	185	21.4520
(((..............)	chr18:673285-673555(-)$1	1	227	245	20.1418
((.............)).	chr8:144916118-144916398(-)$1	1	230	248	21.2181
(((............)))	chr17:4618993-4619228(+)$1	1	64	82	22.0867
(((............)))	chr11:2152335-2152539(-)$1	1	108	126	22.3940
(((............)))	chr11:2152306-2152509(-)$1	1	78	96	22.3940
(((............)))	chr22:20052423-20052725(+)$1	1	263	281	21.3384
((((...........)))	chrX:123045814-123046146(+)$1	1	189	207	21.5737
(((............)))	chr21:46915771-46915976(+)$1	1	146	164	22.1561
(((............)))	chr11:2152379-2152586(-)$1	1	155	173	22.3940
(((.............))	chr6:44796701-44796983(-)$1	1	106	124	21.3201
(((............)))	chrX:63409169-63409425(-)$1	1	123	141	22.0867
.((............)).	chr11:2153238-2153443(-)$1	1	159	177	22.8739
((.............)).	chr11:2152646-2152848(-)$1	1	25	43	21.2181
(((............)))	chr11:2153274-2153492(-)$1	1	44	62	22.1561
((((...........)))	chr11:2152670-2152872(-)$1	1	113	131	21.5737
(((............)))	chr11:2152321-2152534(-)$1	1	103	121	22.3940
.((............)).	chr11:2153107-2153317(-)$1	1	33	51	21.2947
(((.............))	chr3:188593334-188593627(+)$1	1	153	171	20.3613
(((............)))	chr17:4618931-4619193(+)$1	1	126	144	22.0867
.((............)).	chr13:113539267-113539492(+)$1	1	66	84	22.8179
(((.............))	chr1:160185922-160186236(-)$1	1	216	234	20.3613
((.............)).	chr11:2152680-2152882(-)$1	1	59	77	21.2181
.((............)).	chr11:2153128-2153335(-)$1	1	51	69	21.2947
.((............)).	chr11:2153085-2153288(-)$1	1	4	22	21.2947
((((...........)))	chr11:2152708-2152913(-)$1	1	154	172	21.5737
(((............)))	chr3:140683826-140684084(+)$1	1	91	109	22.1561
((.............)).	chr11:2152672-2152876(-)$1	1	53	71	21.2181
((((...........)))	chr11:2152705-2152908(-)$1	1	149	167	21.5737
.((............)).	chr11:2153223-2153428(-)$1	1	144	162	22.8739
.((............)).	chr11:2153197-2153400(-)$1	1	116	134	22.8739
((.............)).	chr11:2152648-2152857(-)$1	1	34	52	21.2181
.((............)).	chr19:41938681-41938952(-)$1	1	163	181	22.6947
((((...........)))	chr11:2152570-2152772(-)$1	1	13	31	21.5737
((.............)).	chr10:111967264-111967543(+)$1	1	81	99	21.9396
((.............)).	chr11:2152718-2152921(-)$1	1	98	116	21.2181
.((............)).	chr11:2153155-2153357(-)$1	1	73	91	21.2947
((((...........)))	chr11:2152585-2152794(-)$1	1	35	53	21.5737
((((...........)))	chr11:2152691-2152893(-)$1	1	134	152	21.5737
((((...........)))	chr20:6018650-6018922(+)$1	1	75	93	20.7530
((((...........)))	chr9:15465258-15465526(+)$1	1	104	122	21.5737

#PSSM
e : 0.27	: : 0.11	" : 0.10	b : 0.10	c : 0.09	= : 0.06	i : 0.05	[ : 0.03	d : 0.03	f : 0.03	! : 0.02	h : 0.02	a : 0.01	g : 0.01	
b : 0.37	e : 0.27	c : 0.10	= : 0.06	i : 0.05	d : 0.03	f : 0.03	h : 0.02	! : 0.01	g : 0.01	
b : 0.27	e : 0.27	c : 0.10	v : 0.10	= : 0.06	i : 0.05	d : 0.03	f : 0.03	h : 0.02	! : 0.01	g : 0.01	
u : 0.54	e : 0.18	v : 0.15	t : 0.02	d : 0.02	a : 0.01	c : 0.01	g : 0.01	w : 0.01	f : 0.01	
u : 0.54	t : 0.28	v : 0.15	w : 0.01	
u : 0.54	t : 0.28	v : 0.15	w : 0.01	
u : 0.54	t : 0.28	v : 0.15	w : 0.01	
u : 0.54	t : 0.28	v : 0.15	w : 0.01	
u : 0.54	t : 0.28	v : 0.15	w : 0.01	
u : 0.54	t : 0.28	v : 0.15	w : 0.01	
u : 0.54	t : 0.28	v : 0.15	w : 0.01	
u : 0.54	t : 0.28	v : 0.15	w : 0.01	
u : 0.54	t : 0.28	v : 0.15	w : 0.01	
u : 0.54	t : 0.28	v : 0.15	w : 0.01	
u : 0.54	t : 0.25	v : 0.15	b : 0.02	w : 0.01	
b : 0.37	e : 0.27	c : 0.07	= : 0.06	v : 0.05	i : 0.03	d : 0.03	f : 0.03	a : 0.01	g : 0.01	w : 0.01	
b : 0.35	e : 0.29	c : 0.10	= : 0.06	i : 0.03	d : 0.03	f : 0.03	h : 0.02	2 : 0.01	g : 0.01	w : 0.01	
e : 0.29	: : 0.20	c : 0.10	3 : 0.09	= : 0.06	i : 0.05	2 : 0.03	d : 0.03	f : 0.03	h : 0.02	] : 0.02	g : 0.01	

#score	1672.4158412502436
#seq	77
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF304YLR_TBRG4_CDS_m2_run2.txt

#BEAR
ee^^^^^^^^^^^^^^^^^^eee	chrM:8584-8794(+)$1	210	11	34	22.3082
ee[axxxxxxxxxxxxxxxaeee	chrM:15425-15658(+)$1	233	72	95	22.2805
iiiiyyyyyyyyyyyyyyyyiii	chrM:6535-6761(+)$1	226	95	118	24.0931
iiiiyyyyyyyyyyyyyyyyiii	chrM:6514-6735(+)$1	221	116	139	24.0931
eeeeewwwwwwwwwwwwwweeee	chrM:11293-11498(+)$1	205	180	203	21.1926
ee^^^^^^^^^^^^^^^^^^eee	chrM:8510-8744(+)$1	234	85	108	22.3082
ddddddduuuuuuuuuuuudddd	chrM:14969-15216(+)$1	247	3	26	18.6825
dd[ddddtttttttttttdddd]	chrM:15708-15927(+)$1	219	150	173	15.8736
iiiiyyyyyyyyyyyyyyyyiii	chrM:6484-6705(+)$1	221	146	169	24.0931
ddddyyyyyyyyyyyyyyyyddd	chrM:11657-11868(+)$1	211	33	56	23.7551
iiiiyyyyyyyyyyyyyyyyiii	chrM:6475-6684(+)$1	209	155	178	24.0931
::ddddvvvvvvvvvvvvvdddd	chrM:4846-5085(+)$1	239	165	188	16.4670
ee^^^^^^^^^^^^^^^^^^eee	chrM:8440-8658(+)$1	218	155	178	22.3082
^^^^^^^^^^^^^^^^^^^^ccc	chrM:10710-10950(+)$1	240	22	45	21.6164
dddzzzzzzzzzzzzzzzzzddd	chrM:10146-10373(+)$1	227	29	52	18.6903
"eeeeeuuuuuuuuuuuueeeee	chrM:10187-10394(+)$1	207	113	136	20.5214
^^^^^^^^^^^^^^^^^^^ffff	chrM:13398-13610(+)$1	212	108	131	20.9869
"eeeeeuuuuuuuuuuuueeeee	chrM:10209-10429(+)$1	220	91	114	20.5214
iiiiyyyyyyyyyyyyyyyyiii	chrM:6564-6772(+)$1	208	66	89	24.0931
eeeeewwwwwwwwwwwwwweeee	chrM:11298-11517(+)$1	219	175	198	21.1926
ee^^^^^^^^^^^^^^^^^^eee	chrM:8437-8640(+)$1	203	158	181	22.3082
^^^^^^^^^^^^^^^^^^^^fff	chrM:4819-5046(+)$1	227	190	213	21.6564
^^^^^^^^^^^^^^^^^^^ccc3	chrM:13608-13840(+)$1	232	126	149	21.0468
iiiiyyyyyyyyyyyyyyyyiii	chrM:6584-6793(+)$1	209	46	69	24.0931
"eeeeeuuuuuuuuuuuueeeee	chrM:10180-10387(+)$1	207	120	143	20.5214
iiiiyyyyyyyyyyyyyyyyiii	chrM:6439-6675(+)$1	236	191	214	24.0931
ee^^^^^^^^^^^^^^^^^^eee	chrM:8544-8784(+)$1	240	51	74	22.3082
^^^^^^^^^^^^^^^^^^^ffff	chrM:13305-13575(+)$1	270	201	224	20.9869
!ffffffuuuuuuuuuuuuffff	chrM:7910-8119(+)$1	209	161	184	18.4632
ee[axxxxxxxxxxxxxxxaeee	chrM:15404-15625(+)$1	221	93	116	22.2805
[cccxxxxxxxxxxxxxxxccc]	chrM:9033-9282(+)$1	249	126	149	21.0664
ee^^^^^^^^^^^^^^^^^^eee	chrM:8405-8637(+)$1	232	190	213	22.3082
^^^^^^^^^^^^^^^^^^^ffff	chrM:13393-13598(+)$1	205	113	136	20.9869
eeeeewwwwwwwwwwwwwweeee	chrM:9506-9728(+)$1	222	15	38	21.1926
^^^^^^^^^^^^^^^^^^^^ccc	chrM:15392-15603(+)$1	211	109	132	21.6164
[ddddwwwwwwwwwwwwwwdddd	chrM:13375-13593(+)$1	218	179	202	20.0935
!ffffffuuuuuuuuuuuuffff	chrM:5324-5599(+)$1	275	235	258	18.4632
"eeeeeuuuuuuuuuuuueeeee	chrM:10173-10380(+)$1	207	127	150	20.5214
"eeeeeuuuuuuuuuuuueeeee	chrM:10131-10346(+)$1	215	169	192	20.5214

#otherMatches

#Seq PSSM
CAUUCUAUUUCCCCCUCUAUUGA	chrM:8584-8794(+)$1	210	11	34	22.3082
GGCGACCCAGACAAUUAUACCCU	chrM:15425-15658(+)$1	233	72	95	22.2805
GUUUAUAUUCUUAUCCUACCAGG	chrM:6535-6761(+)$1	226	95	118	24.0931
GUUUAUAUUCUUAUCCUACCAGG	chrM:6514-6735(+)$1	221	116	139	24.0931
AGGCGGCUAUGGUAUAAUACGCC	chrM:11293-11498(+)$1	205	180	203	21.1926
CAUUCUAUUUCCCCCUCUAUUGA	chrM:8510-8744(+)$1	234	85	108	22.3082
GGCUGAAUCAUCCGCUACCUUCA	chrM:14969-15216(+)$1	247	3	26	18.6825
UAAUUGAAAACAAAAUACUCAAA	chrM:15708-15927(+)$1	219	150	173	15.8736
GUUUAUAUUCUUAUCCUACCAGG	chrM:6484-6705(+)$1	221	146	169	24.0931
GGCGCAGUCAUUCUCAUAAUCGC	chrM:11657-11868(+)$1	211	33	56	23.7551
GUUUAUAUUCUUAUCCUACCAGG	chrM:6475-6684(+)$1	209	155	178	24.0931
ACUCCUCAAUUACCCACAUAGGA	chrM:4846-5085(+)$1	239	165	188	16.4670
CAUUCUAUUUCCCCCUCUAUUGA	chrM:8440-8658(+)$1	218	155	178	22.3082
ACUACGUACAUAACCUAAACCUA	chrM:10710-10950(+)$1	240	22	45	21.6164
CGGCUUCGACCCUAUAUCCCCCG	chrM:10146-10373(+)$1	227	29	52	18.6903
CAACUAACCUGCCACUAAUAGUU	chrM:10187-10394(+)$1	207	113	136	20.5214
CUCCAAAGACCACAUCAUCGAAA	chrM:13398-13610(+)$1	212	108	131	20.9869
CAACUAACCUGCCACUAAUAGUU	chrM:10209-10429(+)$1	220	91	114	20.5214
GUUUAUAUUCUUAUCCUACCAGG	chrM:6564-6772(+)$1	208	66	89	24.0931
AGGCGGCUAUGGUAUAAUACGCC	chrM:11298-11517(+)$1	219	175	198	21.1926
CAUUCUAUUUCCCCCUCUAUUGA	chrM:8437-8640(+)$1	203	158	181	22.3082
AUACUCCUCAAUUACCCACAUAG	chrM:4819-5046(+)$1	227	190	213	21.6564
UCUCAUUACUAACAACAUUUCCC	chrM:13608-13840(+)$1	232	126	149	21.0468
GUUUAUAUUCUUAUCCUACCAGG	chrM:6584-6793(+)$1	209	46	69	24.0931
CAACUAACCUGCCACUAAUAGUU	chrM:10180-10387(+)$1	207	120	143	20.5214
GUUUAUAUUCUUAUCCUACCAGG	chrM:6439-6675(+)$1	236	191	214	24.0931
CAUUCUAUUUCCCCCUCUAUUGA	chrM:8544-8784(+)$1	240	51	74	22.3082
CUCCAAAGACCACAUCAUCGAAA	chrM:13305-13575(+)$1	270	201	224	20.9869
AUGAGCUGUCCCCACAUUAGGCU	chrM:7910-8119(+)$1	209	161	184	18.4632
GGCGACCCAGACAAUUAUACCCU	chrM:15404-15625(+)$1	221	93	116	22.2805
CUACGUUUUCACACUUCUAGUAA	chrM:9033-9282(+)$1	249	126	149	21.0664
CAUUCUAUUUCCCCCUCUAUUGA	chrM:8405-8637(+)$1	232	190	213	22.3082
CUCCAAAGACCACAUCAUCGAAA	chrM:13393-13598(+)$1	205	113	136	20.9869
CCUAGCCCCUACCCCCCAACUAG	chrM:9506-9728(+)$1	222	15	38	21.1926
ACCCAGACAAUUAUACCCUAGCC	chrM:15392-15603(+)$1	211	109	132	21.6164
CUGAGCCCUAUCUAUUACUCUCA	chrM:13375-13593(+)$1	218	179	202	20.0935
AGUUGCAAUACUUAAUUUCUGCA	chrM:5324-5599(+)$1	275	235	258	18.4632
CAACUAACCUGCCACUAAUAGUU	chrM:10173-10380(+)$1	207	127	150	20.5214
CAACUAACCUGCCACUAAUAGUU	chrM:10131-10346(+)$1	215	169	192	20.5214

#DB
((..................)))	chrM:8584-8794(+)$1	1	11	34	22.3082
((.(...............))))	chrM:15425-15658(+)$1	1	72	95	22.2805
((((................)))	chrM:6535-6761(+)$1	1	95	118	24.0931
((((................)))	chrM:6514-6735(+)$1	1	116	139	24.0931
(((((..............))))	chrM:11293-11498(+)$1	1	180	203	21.1926
((..................)))	chrM:8510-8744(+)$1	1	85	108	22.3082
(((((((............))))	chrM:14969-15216(+)$1	1	3	26	18.6825
((.((((...........)))).	chrM:15708-15927(+)$1	1	150	173	15.8736
((((................)))	chrM:6484-6705(+)$1	1	146	169	24.0931
((((................)))	chrM:11657-11868(+)$1	1	33	56	23.7551
((((................)))	chrM:6475-6684(+)$1	1	155	178	24.0931
..((((.............))))	chrM:4846-5085(+)$1	1	165	188	16.4670
((..................)))	chrM:8440-8658(+)$1	1	155	178	22.3082
....................)))	chrM:10710-10950(+)$1	1	22	45	21.6164
(((.................)))	chrM:10146-10373(+)$1	1	29	52	18.6903
.(((((............)))))	chrM:10187-10394(+)$1	1	113	136	20.5214
...................))))	chrM:13398-13610(+)$1	1	108	131	20.9869
.(((((............)))))	chrM:10209-10429(+)$1	1	91	114	20.5214
((((................)))	chrM:6564-6772(+)$1	1	66	89	24.0931
(((((..............))))	chrM:11298-11517(+)$1	1	175	198	21.1926
((..................)))	chrM:8437-8640(+)$1	1	158	181	22.3082
....................)))	chrM:4819-5046(+)$1	1	190	213	21.6564
...................))).	chrM:13608-13840(+)$1	1	126	149	21.0468
((((................)))	chrM:6584-6793(+)$1	1	46	69	24.0931
.(((((............)))))	chrM:10180-10387(+)$1	1	120	143	20.5214
((((................)))	chrM:6439-6675(+)$1	1	191	214	24.0931
((..................)))	chrM:8544-8784(+)$1	1	51	74	22.3082
...................))))	chrM:13305-13575(+)$1	1	201	224	20.9869
.((((((............))))	chrM:7910-8119(+)$1	1	161	184	18.4632
((.(...............))))	chrM:15404-15625(+)$1	1	93	116	22.2805
.(((...............))).	chrM:9033-9282(+)$1	1	126	149	21.0664
((..................)))	chrM:8405-8637(+)$1	1	190	213	22.3082
...................))))	chrM:13393-13598(+)$1	1	113	136	20.9869
(((((..............))))	chrM:9506-9728(+)$1	1	15	38	21.1926
....................)))	chrM:15392-15603(+)$1	1	109	132	21.6164
.((((..............))))	chrM:13375-13593(+)$1	1	179	202	20.0935
.((((((............))))	chrM:5324-5599(+)$1	1	235	258	18.4632
.(((((............)))))	chrM:10173-10380(+)$1	1	127	150	20.5214
.(((((............)))))	chrM:10131-10346(+)$1	1	169	192	20.5214

#PSSM
e : 0.28	i : 0.17	^ : 0.17	" : 0.12	d : 0.10	! : 0.05	[ : 0.05	: : 0.02	
e : 0.41	i : 0.17	^ : 0.17	d : 0.12	f : 0.05	: : 0.02	c : 0.02	
^ : 0.33	e : 0.20	i : 0.17	d : 0.12	[ : 0.07	f : 0.05	c : 0.02	
^ : 0.33	e : 0.20	i : 0.17	d : 0.12	a : 0.05	f : 0.05	z : 0.02	c : 0.02	
^ : 0.33	y : 0.20	e : 0.20	d : 0.10	x : 0.07	f : 0.05	z : 0.02	
^ : 0.33	y : 0.20	e : 0.12	w : 0.10	x : 0.07	d : 0.07	f : 0.05	z : 0.02	
^ : 0.33	y : 0.20	u : 0.12	w : 0.10	x : 0.07	d : 0.05	f : 0.05	v : 0.02	z : 0.02	
^ : 0.33	y : 0.20	u : 0.20	w : 0.10	x : 0.07	t : 0.02	v : 0.02	z : 0.02	
^ : 0.33	y : 0.20	u : 0.20	w : 0.10	x : 0.07	t : 0.02	v : 0.02	z : 0.02	
^ : 0.33	y : 0.20	u : 0.20	w : 0.10	x : 0.07	t : 0.02	v : 0.02	z : 0.02	
^ : 0.33	y : 0.20	u : 0.20	w : 0.10	x : 0.07	t : 0.02	v : 0.02	z : 0.02	
^ : 0.33	y : 0.20	u : 0.20	w : 0.10	x : 0.07	t : 0.02	v : 0.02	z : 0.02	
^ : 0.33	y : 0.20	u : 0.20	w : 0.10	x : 0.07	t : 0.02	v : 0.02	z : 0.02	
^ : 0.33	y : 0.20	u : 0.20	w : 0.10	x : 0.07	t : 0.02	v : 0.02	z : 0.02	
^ : 0.33	y : 0.20	u : 0.20	w : 0.10	x : 0.07	t : 0.02	v : 0.02	z : 0.02	
^ : 0.33	y : 0.20	u : 0.20	w : 0.10	x : 0.07	t : 0.02	v : 0.02	z : 0.02	
^ : 0.33	y : 0.20	u : 0.20	w : 0.10	x : 0.07	t : 0.02	v : 0.02	z : 0.02	
^ : 0.33	y : 0.20	u : 0.20	w : 0.10	x : 0.07	t : 0.02	v : 0.02	z : 0.02	
^ : 0.33	y : 0.20	e : 0.12	w : 0.10	x : 0.07	u : 0.07	d : 0.02	v : 0.02	z : 0.02	
^ : 0.23	y : 0.20	e : 0.20	f : 0.12	d : 0.10	a : 0.05	c : 0.05	z : 0.02	
e : 0.41	i : 0.17	d : 0.15	f : 0.15	c : 0.10	
e : 0.41	i : 0.17	d : 0.15	f : 0.15	c : 0.10	
e : 0.41	i : 0.17	f : 0.15	d : 0.12	] : 0.05	c : 0.05	3 : 0.02	

#score	833.7000323455973
#seq	39
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_transcript_m2_run1.txt

#BEAR
!!ffffffqqqqqqqqffffff]c	chr1:165836866-165837119(+)$1	253	159	183	15.8258
========qqqqqqqq========	chr13:98820713-98820976(+)$1	263	40	64	16.2169
dda[ddddqqqqqqqqdddd]a]d	chr8:134307481-134307729(-)$1	248	14	38	14.3718
dddd[cccqqqqqqqqccc22ddd	chr6:542403-542673(-)$1	270	147	171	13.9928
a[a[ddddqqqqqqqqdddd]aa]	chr7:158272508-158272777(-)$1	269	233	257	14.7816
#ffffffrrrrrrrrrffffff33	chr12:109068887-109069187(-)$1	300	69	93	10.3255
bb[eeeeeqqqqqqqqeeeee]bb	chr5:59723084-59723343(-)$1	259	123	147	13.4275
[ffffffrrrrrrrrrffffff]b	chr9:71398162-71398438(+)$1	276	61	85	10.0609
iiiii!!aqqqqqqqqa22iiiii	chr12:385410-385660(-)$1	250	176	200	14.9770
e[ffffffqqqqqqqqffffff33	chr22:51164154-51164382(+)$1	228	188	212	15.7361
fffffcccqqqqqqqqccc4444f	chr9:108222090-108222381(+)$1	291	51	75	15.1432
iiiiii[aqqqqqqqqa]iiiiii	chr9:127459158-127459422(-)$1	264	60	84	15.6540
========qqqqqqqq========	chr16:82077983-82078237(+)$1	254	54	78	16.2169
cc[eeeeeqqqqqqqqeeeee]cc	chr8:28009038-28009299(+)$1	261	190	214	14.4340
========rrrrrrrrr=======	chr2:238686162-238686469(+)$1	307	30	54	10.7192
ddd[ddddqqqqqqqqdddd22dd	chr13:98820978-98821264(+)$1	286	187	211	13.4991
d[ffffffqqqqqqqqffffffdd	chr9:140540967-140541251(+)$1	284	170	194	15.1165
"""a[cccqqqqqqqqccc]a]cc	chr7:34759416-34759688(-)$1	272	140	164	15.4823
eeffffffqqqqqqqqffffff55	chr6:148002008-148002252(+)$1	244	34	58	13.7482
gg!!cccrrrrrrrrrccc]gggg	chr7:7214736-7214989(+)$1	253	218	242	10.3167
cc[eeeeeqqqqqqqqeeeeeccc	chr1:91474102-91474429(-)$1	327	285	309	14.3777
$gggggggqqqqqqqqggggggg2	chr12:9237317-9237577(-)$1	260	9	33	15.4897
:gggggggqqqqqqqqggggggg:	chr3:122800989-122801262(+)$1	273	97	121	14.0171
[gggggggqqqqqqqqggggggg]	chr14:36061933-36062202(-)$1	269	89	113	15.8793
========qqqqqqqq========	chrY:2729234-2729524(+)$1	290	147	171	16.2169
ffffff[aqqqqqqqqaffffff2	chr2:122242423-122242678(-)$1	255	116	140	15.1599
fff[ddddqqqqqqqqdddd]fff	chr11:107896035-107896358(+)$1	323	294	318	14.6308
!!ffffffqqqqqqqqffffff22	chr3:194162704-194162955(-)$1	251	194	218	15.3761
a[ffffffqqqqqqqqffffffac	chr2:11466980-11467214(-)$1	234	60	84	15.5677
bb!!ddddqqqqqqqqdddd22bb	chr7:128677641-128677965(-)$1	324	78	102	13.2574
a[bb[cccqqqqqqqqccc]bb]a	chr7:29383633-29383902(+)$1	269	89	113	14.5800
ccc[ddddqqqqqqqqdddd]ccc	chr14:19861208-19861429(-)$1	221	108	132	14.8436
ccc!!cccrrrrrrrrrccc]ccc	chr7:777251-777514(+)$1	263	96	120	10.1952
ffff[cccqqqqqqqqccc]ffff	chr16:9005644-9005904(-)$1	260	130	154	15.4863
!gggggggqqqqqqqqgggggggc	chr12:117458663-117459010(+)$1	347	163	187	15.9208
gggg!!bbqqqqqqqqbb22gggg	chr11:102236095-102236367(+)$1	272	153	177	14.2849
ccc[ddddqqqqqqqqdddd]ccc	chr7:86799008-86799283(+)$1	275	120	144	14.8436
::ffffffqqqqqqqqffffffff	chr2:148721472-148721714(-)$1	242	43	67	13.3206
$$$ccc[aqqqqqqqqaccc4444	chr3:15876979-15877328(-)$1	349	108	132	14.5538
ddffffffqqqqqqqqffffff]d	chr16:68127098-68127330(+)$1	232	60	84	15.1426
cffffffrrrrrrrrrffffff]c	chr17:11964768-11965082(+)$1	314	170	194	10.1720
eee[a[bbqqqqqqqqbb]a]eee	chr8:38944568-38944819(+)$1	251	210	234	13.8840
ggggg[bbqqqqqqqqbbgggggg	chr6:24252822-24253072(-)$1	250	28	52	14.9332
ffffff[aqqqqqqqqa]ffffff	chr5:109185326-109185587(+)$1	261	136	160	15.1101
[ccc[cccqqqqqqqqcccccc]b	chr2:75773189-75773440(-)$1	251	161	185	15.3880
dddd[cccqqqqqqqqcccdddd3	chr3:120348912-120349162(-)$1	250	204	228	14.2008
!cccddddqqqqqqqqdddd]ccc	chr10:76162772-76163036(+)$1	264	228	252	14.7385
eee[ddddqqqqqqqqdddd]eee	chr6:3131623-3131876(+)$1	253	123	147	14.1777
eeeee[bbqqqqqqqqbb]eeeee	chr14:89793735-89793999(-)$1	264	76	100	13.3875
egggggggqqqqqqqqgggggggG	chr9:111810095-111810344(-)$1	249	82	106	15.0628
:gggggggqqqqqqqqggggggg:	chr21:35480266-35480519(+)$1	253	122	146	14.0171
iiiiiiiiqqqqqqqqiiiiiiii	chr11:72773184-72773448(-)$1	264	162	186	15.6629
iiiiicccqqqqqqqqccc22iii	chr18:3000327-3000582(-)$1	255	161	185	15.5250

#otherMatches

#Seq PSSM
gcuuggaaucuacuucuuccaaac	chr1:165836866-165837119(+)$1	253	159	183	15.8258
ugggccagguuucucacuggccug	chr13:98820713-98820976(+)$1	263	40	64	16.2169
CCAGGCUGGGGUGGCACAGUGUCG	chr8:134307481-134307729(-)$1	248	14	38	14.3718
GGACUUCACAAAAUCUUGAUCGUC	chr6:542403-542673(-)$1	270	147	171	13.9928
GAGCUGGCUUGCGCCCGCCACCCC	chr7:158272508-158272777(-)$1	269	233	257	14.7816
ugagucuuugauagauagauuccu	chr12:109068887-109069187(-)$1	300	69	93	10.3255
cauugggguuuucaguccccacug	chr5:59723084-59723343(-)$1	259	123	147	13.4275
uugauauucuuuaaauaugucaug	chr9:71398162-71398438(+)$1	276	61	85	10.0609
gaaugCUGUUUcaugccuucauuc	chr12:385410-385660(-)$1	250	176	200	14.9770
UAGCCACAAGGUGUUCUGUGGCCU	chr22:51164154-51164382(+)$1	228	188	212	15.7361
gauugcagugcguccucugaaaau	chr9:108222090-108222381(+)$1	291	51	75	15.1432
caggaaaguuuggcaucauucuug	chr9:127459158-127459422(-)$1	264	60	84	15.6540
AGGCCUCACCCACAGAUGGGGCCU	chr16:82077983-82078237(+)$1	254	54	78	16.2169
ggcaggaguuggauauuuccuucc	chr8:28009038-28009299(+)$1	261	190	214	14.4340
uguugagaaaguuguuguuuuaac	chr2:238686162-238686469(+)$1	307	30	54	10.7192
GUUUGCAGUGCAGUCuuuguuuaa	chr13:98820978-98821264(+)$1	286	187	211	13.4991
CUCUGGCCGAAUUGGAGGCUGGGU	chr9:140540967-140541251(+)$1	284	170	194	15.1165
cuugguguuuccuaaugcagcucc	chr7:34759416-34759688(-)$1	272	140	164	15.4823
uuacauaguuuugcaucuguguuc	chr6:148002008-148002252(+)$1	244	34	58	13.7482
cucuacuucaauucuuaguuagcc	chr7:7214736-7214989(+)$1	253	218	242	10.3167
AGCAGAACUAUCAACUGUUUUCUG	chr1:91474102-91474429(-)$1	327	285	309	14.3777
uugaugaauugacccuuuuaucau	chr12:9237317-9237577(-)$1	260	9	33	15.4897
GUGUUGUGCCAUCUGUUGCAGCAG	chr3:122800989-122801262(+)$1	273	97	121	14.0171
cucauugguuauaauguuagugau	chr14:36061933-36062202(-)$1	269	89	113	15.8793
ucuuuaggcuuauuuuucuAAAGa	chrY:2729234-2729524(+)$1	290	147	171	16.2169
uacaaaugucauaccccuuuguac	chr2:122242423-122242678(-)$1	255	116	140	15.1599
ugguagcaacacuaacuguuucug	chr11:107896035-107896358(+)$1	323	294	318	14.6308
auggggguaauaaaacaccuuuuc	chr3:194162704-194162955(-)$1	251	194	218	15.3761
gucccugaaagagcugucagggcu	chr2:11466980-11467214(-)$1	234	60	84	15.5677
uauuauaggcucaagacuguuuua	chr7:128677641-128677965(-)$1	324	78	102	13.2574
ccuguagauucugucuucuccgug	chr7:29383633-29383902(+)$1	269	89	113	14.5800
gcugguaugauguaugauacaagc	chr14:19861208-19861429(-)$1	221	108	132	14.8436
cuucagcacuuuaaauaugccaag	chr7:777251-777514(+)$1	263	96	120	10.1952
cuggugggaacacagacuucccag	chr16:9005644-9005904(-)$1	260	130	154	15.4863
uauuugguuggauauugccaaguc	chr12:117458663-117459010(+)$1	347	163	187	15.9208
agcaaauccacuacuugaccuguu	chr11:102236095-102236367(+)$1	272	153	177	14.2849
cugcugacuuuuccaugucaccag	chr7:86799008-86799283(+)$1	275	120	144	14.8436
uagaggaauuauuguuuuccuuug	chr2:148721472-148721714(-)$1	242	43	67	13.3206
UAGUUGACUAAGGAUUGCGAAGGG	chr3:15876979-15877328(-)$1	349	108	132	14.5538
AGCUAGGAGGUCUGGAUUCUAGAU	chr16:68127098-68127330(+)$1	232	60	84	15.1426
AUCUUUGUUCUUGAAUCAGAGACU	chr17:11964768-11965082(+)$1	314	170	194	10.1720
agggaucauugcucuuuguugccu	chr8:38944568-38944819(+)$1	251	210	234	13.8840
uugagacuugcauuauggcucagc	chr6:24252822-24253072(-)$1	250	28	52	14.9332
cugauaucuucucauugcuaucag	chr5:109185326-109185587(+)$1	261	136	160	15.1101
UAGGAGAGAGUCUGAGCUCCCUUG	chr2:75773189-75773440(-)$1	251	161	185	15.3880
ugagcaguguuuuguaauucucau	chr3:120348912-120349162(-)$1	250	204	228	14.2008
cugggagaaccacuacucucucca	chr10:76162772-76163036(+)$1	264	228	252	14.7385
GGCCGCUAGCUUCAUAUGGUAGUU	chr6:3131623-3131876(+)$1	253	123	147	14.1777
AGCCUCAUCAACUUUCAUAGGGCU	chr14:89793735-89793999(-)$1	264	76	100	13.3875
AUAGAUAAUCUUUUGUUUAUCUAG	chr9:111810095-111810344(-)$1	249	82	106	15.0628
uguaacguaccguaacacguuacu	chr21:35480266-35480519(+)$1	253	122	146	14.0171
uuuguuaguuuuccuucugacagg	chr11:72773184-72773448(-)$1	264	162	186	15.6629
UGuuucuuuauccuuugagcuggg	chr18:3000327-3000582(-)$1	255	161	185	15.5250

#DB
..((((((........)))))).)	chr1:165836866-165837119(+)$1	1	159	183	15.8258
((((((((........))))))))	chr13:98820713-98820976(+)$1	1	40	64	16.2169
(((.((((........)))).).)	chr8:134307481-134307729(-)$1	1	14	38	14.3718
((((.(((........)))..)))	chr6:542403-542673(-)$1	1	147	171	13.9928
(.(.((((........)))).)).	chr7:158272508-158272777(-)$1	1	233	257	14.7816
.((((((.........))))))..	chr12:109068887-109069187(-)$1	1	69	93	10.3255
((.(((((........))))).))	chr5:59723084-59723343(-)$1	1	123	147	13.4275
.((((((.........)))))).)	chr9:71398162-71398438(+)$1	1	61	85	10.0609
(((((..(........)..)))))	chr12:385410-385660(-)$1	1	176	200	14.9770
(.((((((........))))))..	chr22:51164154-51164382(+)$1	1	188	212	15.7361
((((((((........)))....)	chr9:108222090-108222381(+)$1	1	51	75	15.1432
((((((.(........).))))))	chr9:127459158-127459422(-)$1	1	60	84	15.6540
((((((((........))))))))	chr16:82077983-82078237(+)$1	1	54	78	16.2169
((.(((((........))))).))	chr8:28009038-28009299(+)$1	1	190	214	14.4340
((((((((.........)))))))	chr2:238686162-238686469(+)$1	1	30	54	10.7192
(((.((((........))))..))	chr13:98820978-98821264(+)$1	1	187	211	13.4991
(.((((((........))))))))	chr9:140540967-140541251(+)$1	1	170	194	15.1165
...(.(((........))).).))	chr7:34759416-34759688(-)$1	1	140	164	15.4823
((((((((........))))))..	chr6:148002008-148002252(+)$1	1	34	58	13.7482
((..(((.........))).))))	chr7:7214736-7214989(+)$1	1	218	242	10.3167
((.(((((........))))))))	chr1:91474102-91474429(-)$1	1	285	309	14.3777
.(((((((........))))))).	chr12:9237317-9237577(-)$1	1	9	33	15.4897
.(((((((........))))))).	chr3:122800989-122801262(+)$1	1	97	121	14.0171
.(((((((........))))))).	chr14:36061933-36062202(-)$1	1	89	113	15.8793
((((((((........))))))))	chrY:2729234-2729524(+)$1	1	147	171	16.2169
((((((.(........))))))).	chr2:122242423-122242678(-)$1	1	116	140	15.1599
(((.((((........)))).)))	chr11:107896035-107896358(+)$1	1	294	318	14.6308
..((((((........))))))..	chr3:194162704-194162955(-)$1	1	194	218	15.3761
(.((((((........)))))))(	chr2:11466980-11467214(-)$1	1	60	84	15.5677
((..((((........))))..))	chr7:128677641-128677965(-)$1	1	78	102	13.2574
(.((.(((........))).)).)	chr7:29383633-29383902(+)$1	1	89	113	14.5800
(((.((((........)))).)))	chr14:19861208-19861429(-)$1	1	108	132	14.8436
(((..(((.........))).)))	chr7:777251-777514(+)$1	1	96	120	10.1952
((((.(((........))).))))	chr16:9005644-9005904(-)$1	1	130	154	15.4863
.(((((((........))))))))	chr12:117458663-117459010(+)$1	1	163	187	15.9208
((((..((........))..))))	chr11:102236095-102236367(+)$1	1	153	177	14.2849
(((.((((........)))).)))	chr7:86799008-86799283(+)$1	1	120	144	14.8436
..((((((........))))))((	chr2:148721472-148721714(-)$1	1	43	67	13.3206
...(((.(........))))....	chr3:15876979-15877328(-)$1	1	108	132	14.5538
((((((((........)))))).)	chr16:68127098-68127330(+)$1	1	60	84	15.1426
(((((((.........)))))).)	chr17:11964768-11965082(+)$1	1	170	194	10.1720
(((.(.((........)).).)))	chr8:38944568-38944819(+)$1	1	210	234	13.8840
(((((.((........))))))))	chr6:24252822-24253072(-)$1	1	28	52	14.9332
((((((.(........).))))))	chr5:109185326-109185587(+)$1	1	136	160	15.1101
.(((.(((........)))))).)	chr2:75773189-75773440(-)$1	1	161	185	15.3880
((((.(((........))))))).	chr3:120348912-120349162(-)$1	1	204	228	14.2008
.(((((((........)))).)))	chr10:76162772-76163036(+)$1	1	228	252	14.7385
(((.((((........)))).)))	chr6:3131623-3131876(+)$1	1	123	147	14.1777
(((((.((........)).)))))	chr14:89793735-89793999(-)$1	1	76	100	13.3875
)(((((((........))))))))	chr9:111810095-111810344(-)$1	1	82	106	15.0628
.(((((((........))))))).	chr21:35480266-35480519(+)$1	1	122	146	14.0171
((((((((........))))))))	chr11:72773184-72773448(-)$1	1	162	186	15.6629
((((((((........)))..)))	chr18:3000327-3000582(-)$1	1	161	185	15.5250

#PSSM
d : 0.11	e : 0.11	c : 0.11	f : 0.09	! : 0.07	= : 0.07	i : 0.07	a : 0.05	[ : 0.05	g : 0.05	: : 0.05	b : 0.03	$ : 0.03	# : 0.01	" : 0.01	
g : 0.16	f : 0.15	c : 0.13	d : 0.09	[ : 0.09	= : 0.07	i : 0.07	e : 0.07	! : 0.03	b : 0.03	" : 0.01	: : 0.01	$ : 0.01	
f : 0.30	g : 0.15	c : 0.09	= : 0.07	i : 0.07	d : 0.05	[ : 0.05	e : 0.05	a : 0.03	! : 0.03	" : 0.01	b : 0.01	$ : 0.01	
f : 0.28	[ : 0.15	g : 0.15	= : 0.07	e : 0.07	i : 0.07	! : 0.05	c : 0.05	d : 0.03	a : 0.01	b : 0.01	
f : 0.26	d : 0.16	g : 0.13	[ : 0.11	= : 0.07	e : 0.07	i : 0.07	c : 0.03	! : 0.03	a : 0.01	
f : 0.24	c : 0.20	d : 0.16	g : 0.11	= : 0.07	e : 0.05	[ : 0.05	! : 0.03	i : 0.03	
f : 0.20	c : 0.18	d : 0.16	g : 0.11	= : 0.07	[ : 0.07	b : 0.07	e : 0.05	! : 0.01	i : 0.01	
d : 0.16	c : 0.16	f : 0.15	g : 0.11	a : 0.09	= : 0.07	r : 0.07	b : 0.07	e : 0.05	i : 0.01	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
f : 0.20	d : 0.16	c : 0.16	g : 0.11	a : 0.09	b : 0.07	= : 0.05	e : 0.05	r : 0.03	i : 0.01	
f : 0.22	c : 0.20	d : 0.16	g : 0.11	= : 0.07	b : 0.07	e : 0.05	] : 0.03	2 : 0.01	i : 0.01	
f : 0.24	c : 0.20	d : 0.16	g : 0.13	= : 0.07	e : 0.05	2 : 0.03	i : 0.03	] : 0.03	
f : 0.24	d : 0.18	g : 0.13	= : 0.07	e : 0.07	] : 0.07	2 : 0.05	i : 0.05	c : 0.05	4 : 0.01	a : 0.01	
f : 0.26	] : 0.16	g : 0.16	= : 0.07	2 : 0.07	e : 0.07	i : 0.05	4 : 0.03	a : 0.01	b : 0.01	c : 0.01	d : 0.01	
f : 0.28	g : 0.16	c : 0.11	= : 0.07	i : 0.07	] : 0.05	e : 0.05	a : 0.03	d : 0.03	4 : 0.03	2 : 0.03	b : 0.01	
g : 0.16	] : 0.13	c : 0.13	f : 0.09	= : 0.07	d : 0.07	i : 0.07	e : 0.05	a : 0.03	3 : 0.03	b : 0.03	4 : 0.03	5 : 0.01	2 : 0.01	
c : 0.20	d : 0.09	f : 0.09	= : 0.07	b : 0.07	i : 0.07	3 : 0.05	g : 0.05	2 : 0.05	e : 0.05	] : 0.03	: : 0.03	5 : 0.01	a : 0.01	4 : 0.01	G : 0.01	

#score	759.4520837945432
#seq	53
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_transcript_m3_run1.txt

#BEAR
fffff[dddd"""ddddoooooodddd22ddddfffff	chr2:234184432-234184668(+)$1	236	87	125	15.5069
cccc[eeeee####ddddnnnnndddd4444eeeeecc	chr17:39846180-39846416(+)$1	236	177	215	18.2316
iiiiiiiiibb!!ddddoooooodddd22bb22iiiii	chr22:50873257-50873565(+)$1	308	64	102	14.5364
[ccca[adddd[dddd[allla]dddd]dddd]a]a]c	chr22:50021713-50021960(-)$1	247	188	226	13.2973
ccc[bb[dddd"""ddddnnnnndddddddd]bbccc:	chr16:1420441-1420714(-)$1	273	28	66	15.3062
!dddd!!ffffff[ddddnnnnndddd]ffffff]ddd	chr22:50020775-50021004(-)$1	229	114	152	16.2401
!dddd[dddd[bb[ddddmmmmdddd333bbddddddd	chr21:44479979-44480244(-)$1	265	28	66	13.3204
ffff!!eeeee####ddddmmmmddddeeeeeffffff	chr19:6217082-6217331(-)$1	249	26	64	12.7025
gggg!!dddd!!ccc[ddddllldddd]cccddddggg	chr16:89027576-89027916(-)$1	340	111	149	12.8167
eeeffffff[ccc[ddddnnnnnddddccc]ffffff2	chr5:138614409-138614619(+)$1	210	143	181	15.3981
ddd####gggggggddddnnnnndddd22ggggggg33	chr19:799002-799287(+)$1	285	85	123	17.4118
!hhhhhhhheeeeeddddnnnnndddd333eeeee22h	chr9:139561644-139561868(+)$1	224	122	160	15.3355
eee!!ddddffffffcccnnnnnccc333ffffff444	chr1:28905188-28905401(-)$1	213	130	168	14.1688
e!!eeeeeeeeee[ddddoooooodddd]eeeee5555	chr20:2637521-2637725(+)$1	204	26	64	11.7313
eeeeecccbb!!bbddddnnnnndddd]bb22bb333c	chr1:1689112-1689369(-)$1	257	204	242	14.8118
=[abb[ccc!!cccddddmmmmdddd333ccc22ccc]	chr19:10789941-10790200(+)$1	259	93	131	13.7405
dddbb[eeeee[a[ddddnnnnndddda]eeeee22bb	chr16:88568023-88568272(+)$1	249	54	92	16.6187
ggggggg:bb[bb[ddddnnnnndddd22bb]bb:ggg	chr14:105254533-105254779(-)$1	246	90	128	13.7453
======dddd[a[cccddddllldddd333ccc]a]dd	chr3:160232803-160233012(-)$1	209	110	148	14.3935
e!!ccc!!ccc####ddddmmmmdddd22ccc22ccc2	chr16:85680829-85681098(+)$1	269	137	175	14.2369
g!!a[ccc!!ccceeeeennnnneeeee333ccc22cc	chr16:840874-841129(+)$1	255	204	242	14.2444
eeeee[ddddccc[ddddnnnnndddd22ccc]dddd]	chr16:89023417-89023693(-)$1	276	161	199	17.1566
c$$$$$eeeee"""cccnnnnnccc4444eeeee333c	chr3:194935498-194935712(+)$1	214	64	102	14.1769
ccc####ccc"""eeeeennnnneeeee4444ccc333	chr22:20106395-20106617(+)$1	222	132	170	15.8759
eeeee[ffffff[ddddoooooodddd]ffffff]eee	chr16:88545463-88545693(+)$1	230	163	201	14.3719
:::a!!dddd"""ddddoooooodddd333dddd22a:	chr3:48575930-48576205(-)$1	275	84	122	13.7539
ff$$$$$dddd"""cccooooooccc]dddd]ffffff	chr22:23619960-23620224(+)$1	264	112	150	11.7083
=====ffffff"""ddddmmmmdddd333ffffff:::	chr19:2045360-2045604(-)$1	244	20	58	12.5276
[eeeeebbeeeee[cccooooooccc333eeeee]bb3	chr16:88961929-88962161(-)$1	232	28	66	12.5706
hh!!dddd[a[a!!ddddnnnnndddd]a]a]dddd44	chr10:1046729-1047022(+)$1	293	55	93	17.0730
eee[dddd[a####cccooooooccc4444a]dddd]e	chr22:50636355-50636619(+)$1	264	143	181	13.8442
dddbb[bbccc"""ddddoooooodddd4444ccc]bb	chr16:89033086-89033362(-)$1	276	215	253	15.0681
::hhhhhhhha"""ddddnnnnndddd333a]hhhhhh	chr2:203157690-203157908(+)$1	218	62	100	14.1690
!!dddd!!ccc!!ddddooooooddddcccdddd22cc	chr2:97534547-97534816(-)$1	269	159	197	14.8850
####ffffff[a!!ddddnnnnndddd4444a]fffff	chr16:21653351-21653570(+)$1	219	14	52	17.3156
e"""a!!dddd[eeeeennnnneeeee22dddd22a44	chr13:45911543-45911753(-)$1	210	86	124	13.4782
ddd[a!!dddd####ddddmmmmdddd22dddd22add	chr19:1470156-1470430(-)$1	274	91	129	14.5014
f[ccc[bb!!bb[ddddnnnnnddddbb22bbccc]ff	chr3:186502604-186502847(+)$1	243	156	194	12.5882
cc[bb"""ccc"""ddddnnnnndddd22ccc333bbc	chr22:49964168-49964428(-)$1	260	202	240	18.0953
b[bb!!ffffff!!ddddmmmmdddd]ffffff4444b	chr19:1419327-1419560(+)$1	233	18	56	12.6560
:eeeeedddd####ddddnnnnndddd4444dddd]ee	chr6:33177535-33177812(+)$1	277	131	169	16.8626
eeeffffff[ccc[ddddnnnnnddddccc]ffffff2	chr5:138614432-138614647(+)$1	215	120	158	15.3981
ddd"""ffffff!!ddddmmmmdddd4444ffffff>>	chrX:153628888-153629121(+)$1	233	68	106	14.3313
eeeee"""a[bb[eeeeennnnneeeee4444bb]a33	chr17:2233513-2233741(-)$1	228	112	150	13.8303
!dddd!!ffffff[ddddnnnnndddd]ffffff]ddd	chr22:50020683-50020938(-)$1	255	48	86	16.2401
"dddd[eeeee!!ddddoooooodddd22eeeee]ddd	chr4:53578770-53578972(+)$1	202	27	65	16.0149
bddddffffff"""ddddnnnnnddddffffff]dddd	chr1:228329304-228329565(+)$1	261	172	210	15.6009
ebb[a[ccc[dddd[cccnnnnnccc]dddd]ccc]a]	chr7:45144384-45144597(-)$1	213	138	176	12.2805
ddd####eeeee"""cccnnnnnccc22eeeee66666	chr1:154232203-154232418(+)$1	215	79	117	12.8639
fffffccc[eeeeeddddmmmmdddd333eeeee22cc	chr3:184043411-184043625(+)$1	214	41	79	13.0434
!!ccceeeee[bbeeeeennnnneeeee]bb]eeeee2	chr19:2045855-2046129(-)$1	274	119	157	12.4680

#otherMatches

#Seq PSSM
UCAGUGUGUGUUUCUGAGAGUGAUCGGCUCACAGCUGA	chr2:234184432-234184668(+)$1	236	87	125	15.5069
ACUGUAAUUGAGCAUCCGGAAUAUGGAGAAGUAAUUCA	chr17:39846180-39846416(+)$1	236	177	215	18.2316
CUUGGCUCUCUGGGUCGUGGGUCUGGCAAGGUCGGGGC	chr22:50873257-50873565(+)$1	308	64	102	14.5364
GCCGGUCCCAGAGCCGGGAGCCGCGGUCCUGGAGUCAU	chr22:50021713-50021960(-)$1	247	188	226	13.2973
AGGACCGUGCCAAUGGCUUAGUUGGCCGGCAGGGCCUG	chr16:1420441-1420714(-)$1	273	28	66	15.3062
GCAUGGGUCUGUGGAUGGAUCCCCUGUGCACGGAGCAU	chr22:50020775-50021004(-)$1	229	114	152	16.2401
AGCCCUGGCCACAUGGACUGACGUCCUCUUGGGCCGGG	chr21:44479979-44480244(-)$1	265	28	66	13.3204
CCCCUUGGCCUGGAAUCCUUUGCAGGGGGGCUGGGGGA	chr19:6217082-6217331(-)$1	249	26	64	12.7025
CGCUGAGGGUCAGUUGCUAUGGAGUGGGAAUGCCCAGU	chr16:89027576-89027916(-)$1	340	111	149	12.8167
GGUUUGGCUCCAAGCACUGUUUUGGUGUUGUAGCUGAG	chr5:138614409-138614619(+)$1	210	143	181	15.3981
GCAUCUAGCAUUCCUCGGGGCUUCCGAUGGGGGUGUCU	chr19:799002-799287(+)$1	285	85	123	17.4118
ACCCACCCAGCCUUUGGGAAGCACCCGUGAGAGGCCCU	chr9:139561644-139561868(+)$1	224	122	160	15.3355
UGAGACCAGCUCCUAGGAAAAUGUCUGGGUGGGGGAAA	chr1:28905188-28905401(-)$1	213	130	168	14.1688
UGGGCUUUGCUGGGUGUGGAGUGGCAUAGCUAGCUGUU	chr20:2637521-2637725(+)$1	204	26	64	11.7313
GGGUUUUCGUGGGGGCCUGAGGAGGGCAUCAAGCAAAG	chr1:1689112-1689369(-)$1	257	204	242	14.8118
GGUUGGGGCAGUGUGGGUCGGGGCCCUCUGCAGGGUCG	chr19:10789941-10790200(+)$1	259	93	131	13.7405
GAGAUAGCGGGUGUGGGUGCAGGGCCUCUCCCGCAGGU	chr16:88568023-88568272(+)$1	249	54	92	16.6187
GGGGCCCAGCAGGACCCUGAGGGAGGGAGCCCGCAGAC	chr14:105254533-105254779(-)$1	246	90	128	13.7453
GCAUGUGUGUGUGCUUGUGGUGGCUAUGGAAAGGGGGC	chr3:160232803-160233012(-)$1	209	110	148	14.3935
uaggucgugguggugguuguaaacagcgaaccuaggca	chr16:85680829-85681098(+)$1	269	137	175	14.2369
UGGGGCUCAUGGUGGCAGGUGGACUGUCCGUGCCUGGA	chr16:840874-841129(+)$1	255	204	242	14.2444
GGGCAUAACCUCUGGGGCCUGAAGCCCAAGGGCGGUUU	chr16:89023417-89023693(-)$1	276	161	199	17.1566
agauuagcauggccccugcgcaaggaugacaugcaaau	chr3:194935498-194935712(+)$1	214	64	102	14.1769
CUCCACAGGACACUCAUGAGGACCAUGAUACUUCCACU	chr22:20106395-20106617(+)$1	222	132	170	15.8759
CUGGUGUCGCCAGCAGACCCCACUUUGAUGGCGGGGCU	chr16:88545463-88545693(+)$1	230	163	201	14.3719
CUCCUUGGUCUCUGGCCCCGCCUGGCUCCUGACCCUGA	chr3:48575930-48576205(-)$1	275	84	122	13.7539
UGCUCCAGCUUCCUGGCAUCCUGGCCCAAGCACACCUG	chr22:23619960-23620224(+)$1	264	112	150	11.7083
CCAGGAGCCUGUGGGUCCUGGUGGACGGCCAGGCUAGA	chr19:2045360-2045604(-)$1	244	20	58	12.5276
UGGCCUCCCACAGCCCCUGCAGUGGGUAUCUGUGAGGC	chr16:88961929-88962161(-)$1	232	28	66	12.5706
AUCAGACCUCUCUUCAUCAACAAGGUGUGUGUGGUCAC	chr10:1046729-1047022(+)$1	293	55	93	17.0730
CACAGCCGAGCCCAGGAAGUGCGUCCCCUCCGUGGUCG	chr22:50636355-50636619(+)$1	264	143	181	13.8442
ACCCAGCUCGUGUUCAGAAAGGCCUCUGUCCAGCGCAG	chr16:89033086-89033362(-)$1	276	215	253	15.0681
UGGGAGAUCACUAAGGGCCAAGUGUUCAAUGAUGAUUU	chr2:203157690-203157908(+)$1	218	62	100	14.1690
AAGGCUGGAGCAGGGGAAGCCAAUCCCGCUGGCCCGCC	chr2:97534547-97534816(-)$1	269	159	197	14.8850
AGAUUUUUAgcgcuugcuuuggcagcacauacacuaaa	chr16:21653351-21653570(+)$1	219	14	52	17.3156
UGCGCUUUCUGUCUGUCUUUGUGGCGGCCCAGAUUGAA	chr13:45911543-45911753(-)$1	210	86	124	13.4782
UGGUGGGGCUCGGGUGGGCAGAGGCCCUGGGGCGACCU	chr19:1470156-1470430(-)$1	274	91	129	14.5014
GAUUGCUCAAGCUCAGUCAGGUACUGGCAAGACAGCCA	chr3:186502604-186502847(+)$1	243	156	194	12.5882
CAUGGGGGUGUGGGGGCCAGUCAGGCCAAGCAGAACUU	chr22:49964168-49964428(-)$1	260	202	240	18.0953
GUGCAGACCUGGAGGCCUGCUGAGGCACCGGGUGCCAG	chr19:1419327-1419560(+)$1	233	18	56	12.6560
CAGGGCUUCCCUUCUCCUACCCCAGGAACAAGGAGUGU	chr6:33177535-33177812(+)$1	277	131	169	16.8626
GGUUUGGCUCCAAGCACUGUUUUGGUGUUGUAGCUGAG	chr5:138614432-138614647(+)$1	215	120	158	15.3981
GCCGCCAGAAGGUAUGUAGUGCUGCAGCCCCCUUCUCC	chrX:153628888-153629121(+)$1	233	68	106	14.3313
GAACCUGUCUGAAGCAUCUCAGUGAUGCAAUCUCUGUG	chr17:2233513-2233741(-)$1	228	112	150	13.8303
GCAUGGGUCUGUGGAUGGAUCCCCUGUGCACGGAGCAU	chr22:50020683-50020938(-)$1	255	48	86	16.2401
CUUUGCCCGCCUCGAGCUCCUCUGCUCCCGGCGGCCAG	chr4:53578770-53578972(+)$1	202	27	65	16.0149
GCUCCCAGGAGACCUUCCAUCUCGGAGCUCCUGUGGAG	chr1:228329304-228329565(+)$1	261	172	210	15.6009
GCACAGUGGUCCUGUGUUUAGUCAGCUCAGGCCCAGUC	chr7:45144384-45144597(-)$1	213	138	176	12.2805
UGCUAACUCUAGCCAGCUUAAUUAGUGACUGGAUAAAU	chr1:154232203-154232418(+)$1	215	79	117	12.8639
GGGAGCAGUGAAGGGACCGGGAGGUUAUACUUUCCUCU	chr3:184043411-184043625(+)$1	214	41	79	13.0434
UACCAGGGUGGGGGCUUCAGACAGAGGCACUGUGCCCA	chr19:2045855-2046129(-)$1	274	119	157	12.4680

#DB
(((((.((((...((((......))))..)))))))))	chr2:234184432-234184668(+)$1	1	87	125	15.5069
((((.(((((....((((.....))))....)))))))	chr17:39846180-39846416(+)$1	1	177	215	18.2316
(((((((((((..((((......))))..))..)))))	chr22:50873257-50873565(+)$1	1	64	102	14.5364
.((((.(((((.((((.(...).)))).)))).).).)	chr22:50021713-50021960(-)$1	1	188	226	13.2973
(((.((.((((...((((.....)))))))).))))).	chr16:1420441-1420714(-)$1	1	28	66	15.3062
.((((..((((((.((((.....)))).)))))).)))	chr22:50020775-50021004(-)$1	1	114	152	16.2401
.((((.((((.((.((((....))))...)))))))))	chr21:44479979-44480244(-)$1	1	28	66	13.3204
((((..(((((....((((....)))))))))))))))	chr19:6217082-6217331(-)$1	1	26	64	12.7025
((((..((((..(((.((((...)))).))))))))))	chr16:89027576-89027916(-)$1	1	111	149	12.8167
(((((((((.(((.((((.....))))))).)))))).	chr5:138614409-138614619(+)$1	1	143	181	15.3981
(((....(((((((((((.....))))..)))))))..	chr19:799002-799287(+)$1	1	85	123	17.4118
.(((((((((((((((((.....))))...)))))..)	chr9:139561644-139561868(+)$1	1	122	160	15.3355
(((..(((((((((((((.....)))...))))))...	chr1:28905188-28905401(-)$1	1	130	168	14.1688
(..((((((((((.((((......)))).)))))....	chr20:2637521-2637725(+)$1	1	26	64	11.7313
((((((((((..((((((.....)))).))..))...)	chr1:1689112-1689369(-)$1	1	204	242	14.8118
(.(((.(((..(((((((....))))...)))..))).	chr19:10789941-10790200(+)$1	1	93	131	13.7405
(((((.(((((.(.((((.....))))).)))))..))	chr16:88568023-88568272(+)$1	1	54	92	16.6187
))))))).((.((.((((.....))))..)).)).(((	chr14:105254533-105254779(-)$1	1	90	128	13.7453
))))))((((.(.(((((((...))))...))).).))	chr3:160232803-160233012(-)$1	1	110	148	14.3935
(..(((..(((....((((....))))..)))..))).	chr16:85680829-85681098(+)$1	1	137	175	14.2369
(..(.(((..((((((((.....)))))...)))..))	chr16:840874-841129(+)$1	1	204	242	14.2444
(((((.(((((((.((((.....))))..))).)))).	chr16:89023417-89023693(-)$1	1	161	199	17.1566
(.....(((((...(((.....)))....)))))...)	chr3:194935498-194935712(+)$1	1	64	102	14.1769
(((....(((...(((((.....)))))....)))...	chr22:20106395-20106617(+)$1	1	132	170	15.8759
(((((.((((((.((((......)))).)))))).)))	chr16:88545463-88545693(+)$1	1	163	201	14.3719
...(..((((...((((......))))...))))..).	chr3:48575930-48576205(-)$1	1	84	122	13.7539
((.....((((...(((......))).)))).))))))	chr22:23619960-23620224(+)$1	1	112	150	11.7083
)))))((((((...((((....))))...))))))...	chr19:2045360-2045604(-)$1	1	20	58	12.5276
.((((((((((((.(((......)))...))))).)).	chr16:88961929-88962161(-)$1	1	28	66	12.5706
((..((((.(.(..((((.....)))).).).))))..	chr10:1046729-1047022(+)$1	1	55	93	17.0730
(((.((((.(....(((......)))....).)))).)	chr22:50636355-50636619(+)$1	1	143	181	13.8442
(((((.(((((...((((......))))....))).))	chr16:89033086-89033362(-)$1	1	215	253	15.0681
..(((((((((...((((.....))))...).))))))	chr2:203157690-203157908(+)$1	1	62	100	14.1690
..((((..(((..((((......)))))))))))..))	chr2:97534547-97534816(-)$1	1	159	197	14.8850
....((((((.(..((((.....))))....).)))))	chr16:21653351-21653570(+)$1	1	14	52	17.3156
(...(..((((.(((((.....)))))..))))..)..	chr13:45911543-45911753(-)$1	1	86	124	13.4782
(((.(..((((....((((....))))..))))..)))	chr19:1470156-1470430(-)$1	1	91	129	14.5014
(.(((.((..((.((((.....))))))..))))).))	chr3:186502604-186502847(+)$1	1	156	194	12.5882
((.((...(((...((((.....))))..)))...)))	chr22:49964168-49964428(-)$1	1	202	240	18.0953
(.((..((((((..((((....)))).))))))....)	chr19:1419327-1419560(+)$1	1	18	56	12.6560
.(((((((((....((((.....))))....)))).))	chr6:33177535-33177812(+)$1	1	131	169	16.8626
(((((((((.(((.((((.....))))))).)))))).	chr5:138614432-138614647(+)$1	1	120	158	15.3981
(((...((((((..((((....))))....))))))..	chrX:153628888-153629121(+)$1	1	68	106	14.3313
(((((...(.((.(((((.....)))))....)).)..	chr17:2233513-2233741(-)$1	1	112	150	13.8303
.((((..((((((.((((.....)))).)))))).)))	chr22:50020683-50020938(-)$1	1	48	86	16.2401
.((((.(((((..((((......))))..))))).)))	chr4:53578770-53578972(+)$1	1	27	65	16.0149
(((((((((((...((((.....)))))))))).))))	chr1:228329304-228329565(+)$1	1	172	210	15.6009
(((.(.(((.((((.(((.....))).)))).))).).	chr7:45144384-45144597(-)$1	1	138	176	12.2805
(((....(((((...(((.....)))..))))).....	chr1:154232203-154232418(+)$1	1	79	117	12.8639
((((((((.(((((((((....))))...)))))..))	chr3:184043411-184043625(+)$1	1	41	79	13.0434
..((((((((.(((((((.....))))).)).))))).	chr19:2045855-2046129(-)$1	1	119	157	12.4680

#PSSM
e : 0.23	! : 0.11	d : 0.11	f : 0.09	c : 0.09	g : 0.05	= : 0.05	: : 0.05	[ : 0.03	b : 0.03	i : 0.01	h : 0.01	# : 0.01	" : 0.01	
d : 0.21	e : 0.19	c : 0.09	! : 0.09	f : 0.07	[ : 0.05	g : 0.03	h : 0.03	= : 0.03	: : 0.03	i : 0.01	$ : 0.01	# : 0.01	" : 0.01	b : 0.01	
d : 0.23	e : 0.19	c : 0.11	! : 0.07	f : 0.05	g : 0.03	h : 0.03	= : 0.03	$ : 0.03	b : 0.03	i : 0.01	a : 0.01	: : 0.01	# : 0.01	" : 0.01	[ : 0.01	
e : 0.13	d : 0.11	f : 0.09	c : 0.09	b : 0.09	[ : 0.07	# : 0.07	g : 0.03	h : 0.03	! : 0.03	= : 0.03	a : 0.03	$ : 0.03	" : 0.03	i : 0.01	
d : 0.15	e : 0.13	f : 0.09	b : 0.09	! : 0.09	a : 0.07	# : 0.05	c : 0.05	[ : 0.03	h : 0.03	= : 0.03	$ : 0.03	i : 0.01	g : 0.01	" : 0.01	
[ : 0.21	! : 0.15	e : 0.09	f : 0.09	d : 0.07	c : 0.07	# : 0.05	" : 0.05	h : 0.03	$ : 0.03	i : 0.01	b : 0.01	g : 0.01	= : 0.01	
d : 0.19	f : 0.15	e : 0.13	! : 0.11	c : 0.09	# : 0.05	b : 0.05	h : 0.03	" : 0.03	i : 0.01	a : 0.01	[ : 0.01	g : 0.01	$ : 0.01	
d : 0.29	f : 0.19	e : 0.15	c : 0.11	b : 0.05	h : 0.03	! : 0.03	" : 0.03	i : 0.01	g : 0.01	: : 0.01	
d : 0.25	f : 0.19	e : 0.17	c : 0.13	[ : 0.05	h : 0.03	b : 0.03	! : 0.03	i : 0.01	g : 0.01	a : 0.01	
d : 0.23	e : 0.21	f : 0.17	c : 0.09	[ : 0.07	b : 0.05	! : 0.05	a : 0.03	g : 0.01	h : 0.01	
e : 0.17	f : 0.15	c : 0.15	d : 0.11	[ : 0.11	" : 0.05	# : 0.05	b : 0.05	! : 0.05	g : 0.01	a : 0.01	
" : 0.21	# : 0.11	f : 0.11	! : 0.09	b : 0.09	c : 0.09	e : 0.09	[ : 0.05	a : 0.05	g : 0.01	d : 0.01	
" : 0.23	! : 0.13	# : 0.11	c : 0.11	e : 0.09	b : 0.07	[ : 0.07	f : 0.05	d : 0.03	g : 0.01	a : 0.01	
[ : 0.19	d : 0.17	" : 0.17	e : 0.13	# : 0.11	! : 0.07	c : 0.05	g : 0.01	f : 0.01	b : 0.01	
d : 0.66	c : 0.11	e : 0.09	# : 0.05	f : 0.01	[ : 0.01	" : 0.01	
d : 0.72	c : 0.15	e : 0.09	[ : 0.01	
d : 0.74	c : 0.13	e : 0.09	[ : 0.01	
d : 0.60	o : 0.17	e : 0.07	c : 0.05	n : 0.05	a : 0.01	
n : 0.54	o : 0.21	m : 0.11	d : 0.09	l : 0.01	
n : 0.54	o : 0.21	m : 0.17	d : 0.03	l : 0.01	
n : 0.54	o : 0.21	m : 0.17	l : 0.05	
n : 0.54	o : 0.21	m : 0.17	l : 0.03	a : 0.01	
n : 0.49	o : 0.21	d : 0.13	m : 0.05	l : 0.03	] : 0.01	c : 0.01	e : 0.01	
d : 0.72	c : 0.13	e : 0.09	o : 0.03	
d : 0.76	c : 0.13	e : 0.09	
d : 0.76	c : 0.11	e : 0.09	4 : 0.01	
d : 0.62	3 : 0.11	e : 0.09	4 : 0.05	] : 0.05	b : 0.01	2 : 0.01	
2 : 0.21	3 : 0.19	] : 0.13	4 : 0.11	d : 0.09	e : 0.09	c : 0.05	f : 0.03	a : 0.01	b : 0.01	
2 : 0.21	3 : 0.21	4 : 0.17	f : 0.09	d : 0.07	c : 0.07	] : 0.05	e : 0.03	b : 0.01	a : 0.01	
4 : 0.15	e : 0.15	c : 0.15	d : 0.13	f : 0.13	b : 0.09	3 : 0.09	g : 0.01	] : 0.01	2 : 0.01	
d : 0.17	e : 0.17	f : 0.15	4 : 0.11	c : 0.11	b : 0.09	a : 0.05	] : 0.03	g : 0.01	2 : 0.01	3 : 0.01	
e : 0.19	f : 0.19	d : 0.17	] : 0.15	c : 0.11	4 : 0.05	2 : 0.03	g : 0.01	a : 0.01	b : 0.01	
f : 0.23	d : 0.19	e : 0.19	c : 0.11	b : 0.07	2 : 0.05	] : 0.05	g : 0.01	h : 0.01	3 : 0.01	
f : 0.23	e : 0.17	d : 0.15	c : 0.09	b : 0.07	2 : 0.07	] : 0.03	i : 0.01	a : 0.01	g : 0.01	h : 0.01	3 : 0.01	4 : 0.01	6 : 0.01	
f : 0.17	] : 0.13	c : 0.13	d : 0.13	2 : 0.13	e : 0.05	3 : 0.05	i : 0.01	g : 0.01	5 : 0.01	: : 0.01	a : 0.01	h : 0.01	4 : 0.01	6 : 0.01	
d : 0.15	f : 0.13	2 : 0.11	] : 0.09	a : 0.07	e : 0.05	c : 0.05	g : 0.05	3 : 0.05	4 : 0.03	b : 0.03	i : 0.01	5 : 0.01	: : 0.01	h : 0.01	6 : 0.01	
d : 0.15	f : 0.13	c : 0.13	3 : 0.09	4 : 0.07	b : 0.07	e : 0.05	] : 0.03	g : 0.03	a : 0.03	i : 0.01	2 : 0.01	5 : 0.01	: : 0.01	h : 0.01	> : 0.01	6 : 0.01	
c : 0.15	d : 0.13	f : 0.09	2 : 0.07	3 : 0.07	: : 0.05	4 : 0.05	] : 0.05	b : 0.05	e : 0.05	g : 0.03	h : 0.03	i : 0.01	5 : 0.01	> : 0.01	6 : 0.01	

#score	742.5467127972255
#seq	51
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_CDS_m3_run1.txt

#BEAR
&&&gggggggnnnnnggggggg4444	chr3:47894271-47894580(-)$1	309	23	49	11.4136
ggggggg[bbnnnnnbb22ggggggg	chr4:155505485-155505884(-)$1	399	28	54	13.0085
======[cccmmmmccc]========	chr16:2550825-2551169(+)$1	344	168	194	8.9138
ffffff[cccnnnnnccc22ffffff	chr19:3543369-3543659(-)$1	290	87	113	13.2823
==========nnnnn==========:	chr16:3534829-3535122(+)$1	293	198	224	13.7206
"""ccc[cccnnnnnccc22ccc]ee	chr19:47778303-47778615(+)$1	312	61	87	13.3227
ccbb[eeeeennnnneeeee333bb]	chr11:60703483-60703744(+)$1	261	26	52	11.8384
ga[gggggggnnnnnggggggg]a:J	chr22:38054673-38055028(+)$1	355	92	118	11.3332
$$$$eeeeeannnnna]eeeee22ee	chr17:80196587-80196891(+)$1	304	6	32	10.9974
[eeeee[cccnnnnnccceeeee]a]	chr22:39917491-39917776(+)$1	285	221	247	13.3981
ffffff[cccnnnnncccffffff]c	chr19:18266695-18266931(+)$1	236	68	94	13.4564
ccc####cccooooooccc4444ccc	chr7:1037115-1037401(-)$1	286	20	46	9.2667
ggggffffffnnnnnffffff22ggg	chr15:79214287-79214628(-)$1	341	31	57	12.0134
g"""bb[cccnnnnncccbb333ggg	chr19:13254895-13255305(-)$1	410	257	283	13.3361
ffff####bbnnnnnbb4444fffff	chr12:120534515-120534846(-)$1	331	5	31	12.1831
:ffffffcccnnnnnccc]ffffff:	chr3:184063025-184063390(+)$1	365	28	54	11.3983
fff[abb[bbnnnnnbb]bb]a]fff	chr12:49223775-49224128(-)$1	353	74	100	11.6185
==========nnnnn===========	chr9:140003326-140003580(+)$1	254	225	251	14.5701
ffffffddddnnnnndddd4444fff	chr9:140167246-140167541(+)$1	295	16	42	11.7874
gggg[eeeeennnnneeeee]ggggg	chr16:1496920-1497160(-)$1	240	128	154	12.7246
ffffff[cccnnnnnccc333fffff	chr7:5385199-5385542(-)$1	343	266	292	13.9119
[ccc[eeeeennnnneeeee22ccc]	chr17:1945967-1946236(+)$1	269	143	169	12.1516
gggggg[cccnnnnncccgggggggd	chr22:50716775-50717030(-)$1	255	98	124	14.1862
ebb[dddd[annnnna]ddddbb]ee	chr7:149575748-149575976(+)$1	228	122	148	10.3071
ffffff[cccnnnnncccffffff]c	chr19:18266620-18266873(+)$1	253	143	169	13.4564
eeee[eeeeennnnneeeeeeeeeed	chr20:30822350-30822657(+)$1	307	158	184	11.3690
e[dddd[cccnnnnncccddddeeee	chr16:475868-476211(+)$1	343	169	195	12.0784
iiiiii[cccnnnnnccciiiiiiii	chr2:70676561-70676840(-)$1	279	205	231	14.5168
cc[gggggggnnnnnggggggg22cc	chr11:65178716-65178994(+)$1	278	161	187	13.4498
ccc!!eeeeennnnneeeee333ccc	chr12:125262965-125263229(-)$1	264	227	253	12.8418
b[dddd[cccnnnnncccdddd]bb]	chr1:44086543-44086762(+)$1	219	115	141	12.0426
eeeeebb[bbnnnnnbbbb]eeeeec	chr1:6508918-6509244(+)$1	326	141	167	10.7453
:eeeee[cccnnnnnccc]eeeee::	chr9:99083286-99083662(-)$1	376	140	166	10.4988
ccc[ffffffnnnnnffffff]cccc	chr11:65380917-65381271(-)$1	354	155	181	12.1409
dffffffcccnnnnnccc]ffffff]	chr19:3543285-3543544(-)$1	259	29	55	13.0875
c"""ddddbbnnnnnbb]ddddccc2	chr16:66638621-66638869(+)$1	248	206	232	11.3226
[iiiiiiiiinnnnniiiiiiiiibb	chr22:29191308-29191577(-)$1	269	75	101	13.4952
cchhhhhhhhnnnnnhhhhhhhh]cc	chr15:44086006-44086285(+)$1	279	138	164	10.6598
hhhhhh!!bbnnnnnbb22hhhhhhh	chr19:47724735-47725071(-)$1	336	47	73	10.1465
cc[bb[a[bbnnnnnbb]a]bb]ccc	chr1:1375048-1375264(+)$1	216	19	45	12.0120
==========oooooo==========	chr16:74485838-74486097(-)$1	259	227	253	10.4033
cc[gggggggooooooggggggg]cc	chr2:129075951-129076234(-)$1	283	203	229	9.6585
c[ccceeeeennnnneeeee]ccc]c	chr1:29652047-29652307(+)$1	260	125	151	12.3753
cccgggggggnnnnnggggggg22cc	chr22:39131058-39131330(-)$1	272	226	252	13.2986
eeeee[ddddnnnnnddddeeeee22	chr22:43267197-43267477(-)$1	280	92	118	10.8678
dd[a!!ddddnnnnndddd22a]ddd	chr16:4562435-4562652(-)$1	217	87	113	10.9711
b[eeeee[bbnnnnnbb22eeeee]b	chr16:2757350-2757627(+)$1	277	124	150	11.5961
==========nnnnn==========:	chr19:8438838-8439199(+)$1	361	224	250	13.7206
eeeeecccbbnnnnnbb]cccfffff	chr8:134256499-134256705(-)$1	206	59	85	11.8863
f!!bb!!cccnnnnnccc]bb]ffff	chr1:2518429-2518678(+)$1	249	62	88	12.8711
$$ccc!!cccnnnnnccc333ccc22	chr22:50716560-50716794(-)$1	234	203	229	13.2405
==========oooooo==========	chr17:79801361-79801584(-)$1	223	41	67	10.4033
[bbgggggggnnnnnggggggg333b	chr14:21560335-21560575(-)$1	240	115	141	13.0980
fffffffcccnnnnnccc4444ffff	chr17:80401387-80401645(-)$1	258	49	75	13.2619

#otherMatches

#Seq PSSM
UUUAAUGAAGUAACCUUUUAUUUUCC	chr3:47894271-47894580(-)$1	309	23	49	11.4136
UGAUCCAGCAAAGAAUGGAUGGAUCA	chr4:155505485-155505884(-)$1	399	28	54	13.0085
CGGUGGGCCGAGGCUGGGCUGCCGCC	chr16:2550825-2551169(+)$1	344	168	194	8.9138
CCGCAGGUGCUGGGUGUAGGCUGCGG	chr19:3543369-3543659(-)$1	290	87	113	13.2823
GUGGGCAUGCGCAGAGCAUGCCCAUC	chr16:3534829-3535122(+)$1	293	198	224	13.7206
ACCCGCCGGCCCACAGCCCAGCGCGC	chr19:47778303-47778615(+)$1	312	61	87	13.3227
GGGCUGCCGCUGCAUGUGGCUCUGCA	chr11:60703483-60703744(+)$1	261	26	52	11.8384
ggaggccggcggccggccggcUGCAU	chr22:38054673-38055028(+)$1	355	92	118	11.3332
GACCCACGUCUACAUGUACGUGUUCA	chr17:80196587-80196891(+)$1	304	6	32	10.9974
UAGGGUUAGGGGCCUCCUACCUUUGU	chr22:39917491-39917776(+)$1	285	221	247	13.3981
GCUGCCCGGCGACGUGCUGGUAGUGA	chr19:18266695-18266931(+)$1	236	68	94	13.4564
CCGAGAGCUGACGGUGCAGAAGGCGG	chr7:1037115-1037401(-)$1	286	20	46	9.2667
CCUGUGGUGGGGAGACCGCCGGCCGG	chr15:79214287-79214628(-)$1	341	31	57	12.0134
CCUGGGCUGGAACCACCACCACUGGU	chr19:13254895-13255305(-)$1	410	257	283	13.3361
UGCCCCCUCCUCCCCGGCCAAGGCGC	chr12:120534515-120534846(-)$1	331	5	31	12.1831
ACACAUUUCCUCCUCGGAUAAUGUGA	chr3:184063025-184063390(+)$1	365	28	54	11.3983
GGCAGGGAGAGCAAAUUACCACAGCU	chr12:49223775-49224128(-)$1	353	74	100	11.6185
GGCUGGACGGCAAGUCCGUCUAGCUC	chr9:140003326-140003580(+)$1	254	225	251	14.5701
CCAGCUCGGCGAGAAGCUGGAACAGC	chr9:140167246-140167541(+)$1	295	16	42	11.7874
UGGUGGUGGUGGACAACCGCAAUCAG	chr16:1496920-1497160(-)$1	240	128	154	12.7246
CCACGGUGGGUCCAUCCCUGUCUGUG	chr7:5385199-5385542(-)$1	343	266	292	13.9119
CAGGCAGGCGAUCCCCGCUUCCCCUU	chr17:1945967-1946236(+)$1	269	143	169	12.1516
CCCUCAUCCUGUCCAAGGUGGGGGUC	chr22:50716775-50717030(-)$1	255	98	124	14.1862
CCGACCCAGGUACUGUGUGGGCGAGG	chr7:149575748-149575976(+)$1	228	122	148	10.3071
GCUGCCCGGCGACGUGCUGGUAGUGA	chr19:18266620-18266873(+)$1	253	143	169	13.4564
UCUGAGCUGGUCCUUCCAGCCAGGCC	chr20:30822350-30822657(+)$1	307	158	184	11.3690
gcucggagccgccggggcccgacccg	chr16:475868-476211(+)$1	343	169	195	12.0784
GCCUGCCUGUGAGAAACAGUGGGUCC	chr2:70676561-70676840(-)$1	279	205	231	14.5168
GCACUGUCCUCCUGAGGGGCAGGCGC	chr11:65178716-65178994(+)$1	278	161	187	13.4498
UGCCAUGUGCCUGUUGCACACCUGCA	chr12:125262965-125263229(-)$1	264	227	253	12.8418
UGCAGGUGGGACUGGCCCCCUGGAGG	chr1:44086543-44086762(+)$1	219	115	141	12.0426
GGCCGCGAGUUCGCCACCGCCGGCCC	chr1:6508918-6509244(+)$1	326	141	167	10.7453
GAGUCUGCAGCAGGAUUGGAGACUGA	chr9:99083286-99083662(-)$1	376	140	166	10.4988
GCAGCGGGUUAUGCCAACCCGGUGUG	chr11:65380917-65381271(-)$1	354	155	181	12.1409
CCUCUGGCAGGCCCGCUGCCCAGGGC	chr19:3543285-3543544(-)$1	259	29	55	13.0875
CAAAGGCCGCCUCCUGCUGGCCGAGU	chr16:66638621-66638869(+)$1	248	206	232	11.3226
AGUCUUAGAGAUACCCUCUGAGACAG	chr22:29191308-29191577(-)$1	269	75	101	13.4952
UCCCCCUGGGCCACUCCCGGGGGUGA	chr15:44086006-44086285(+)$1	279	138	164	10.6598
GGGGGGCAGGCCCCUCCCACCUCCUG	chr19:47724735-47725071(-)$1	336	47	73	10.1465
CGCGCUGUCCGCCAAGGCCUGCACGC	chr1:1375048-1375264(+)$1	216	19	45	12.0120
AAAGAUGGAGGAUUUGCUCUGUUUUU	chr16:74485838-74486097(-)$1	259	227	253	10.4033
CGGGCCCAGGACUGAGCCUgggcgcg	chr2:129075951-129076234(-)$1	283	203	229	9.6585
GCGGGGCCCUGGCCUGGGGCACCCAC	chr1:29652047-29652307(+)$1	260	125	151	12.3753
UCUGUUUUUCUAACUGAAAAGCUAAG	chr22:39131058-39131330(-)$1	272	226	252	13.2986
AUUAUGUGGAGGCGAUCCAGUGAUGA	chr22:43267197-43267477(-)$1	280	92	118	10.8678
GGGACUCGGGACUCCCCCGCCUGUCA	chr16:4562435-4562652(-)$1	217	87	113	10.9711
GGUGGGUGGUGAGAGACGGGCCCAGC	chr16:2757350-2757627(+)$1	277	124	150	11.5961
UUGGGGCCAGCCAGACUGGCCUCAAU	chr19:8438838-8439199(+)$1	361	224	250	13.7206
CCCUCUCUCCUAGAUGGCGGACUGUG	chr8:134256499-134256705(-)$1	206	59	85	11.8863
GGGCAACGGGGCGCGCCCAUGACCCA	chr1:2518429-2518678(+)$1	249	62	88	12.8711
GAAGGCCAUCACCGAGAUCUACCUGA	chr22:50716560-50716794(-)$1	234	203	229	13.2405
UGAAAAUUCCGUCUGUGGGAUUUUUA	chr17:79801361-79801584(-)$1	223	41	67	10.4033
UGCCCCGGGGCCUGCCUCCGGGCCUG	chr14:21560335-21560575(-)$1	240	115	141	13.0980
CUCAUGCUGCUGCUUGCACACUGCAU	chr17:80401387-80401645(-)$1	258	49	75	13.2619

#DB
...(((((((.....)))))))....	chr3:47894271-47894580(-)$1	1	23	49	11.4136
(((((((.((.....))..)))))))	chr4:155505485-155505884(-)$1	1	28	54	13.0085
((((((.(((....))).))))))))	chr16:2550825-2551169(+)$1	1	168	194	8.9138
((((((.(((.....)))..))))))	chr19:3543369-3543659(-)$1	1	87	113	13.2823
((((((((((.....)))))))))).	chr16:3534829-3535122(+)$1	1	198	224	13.7206
...(((.(((.....)))..))).))	chr19:47778303-47778615(+)$1	1	61	87	13.3227
((((.(((((.....)))))...)).	chr11:60703483-60703744(+)$1	1	26	52	11.8384
)(.(((((((.....))))))).).)	chr22:38054673-38055028(+)$1	1	92	118	11.3332
....((((((.....).)))))..))	chr17:80196587-80196891(+)$1	1	6	32	10.9974
.(((((.(((.....)))))))).).	chr22:39917491-39917776(+)$1	1	221	247	13.3981
((((((.(((.....))))))))).)	chr19:18266695-18266931(+)$1	1	68	94	13.4564
(((....(((......)))....)))	chr7:1037115-1037401(-)$1	1	20	46	9.2667
((((((((((.....))))))..)))	chr15:79214287-79214628(-)$1	1	31	57	12.0134
(...((.(((.....)))))...)))	chr19:13254895-13255305(-)$1	1	257	283	13.3361
((((....((.....))....)))))	chr12:120534515-120534846(-)$1	1	5	31	12.1831
.(((((((((.....))).)))))).	chr3:184063025-184063390(+)$1	1	28	54	11.3983
(((.(((.((.....)).)).).)))	chr12:49223775-49224128(-)$1	1	74	100	11.6185
((((((((((.....)))))))))))	chr9:140003326-140003580(+)$1	1	225	251	14.5701
((((((((((.....))))....)))	chr9:140167246-140167541(+)$1	1	16	42	11.7874
((((.(((((.....))))).)))))	chr16:1496920-1497160(-)$1	1	128	154	12.7246
((((((.(((.....)))...)))))	chr7:5385199-5385542(-)$1	1	266	292	13.9119
.(((.(((((.....)))))..))).	chr17:1945967-1946236(+)$1	1	143	169	12.1516
((((((.(((.....)))))))))))	chr22:50716775-50717030(-)$1	1	98	124	14.1862
(((.((((.(.....).)))))).))	chr7:149575748-149575976(+)$1	1	122	148	10.3071
((((((.(((.....))))))))).)	chr19:18266620-18266873(+)$1	1	143	169	13.4564
((((.(((((.....)))))))))))	chr20:30822350-30822657(+)$1	1	158	184	11.3690
(.((((.(((.....)))))))))))	chr16:475868-476211(+)$1	1	169	195	12.0784
((((((.(((.....)))))))))))	chr2:70676561-70676840(-)$1	1	205	231	14.5168
((.(((((((.....)))))))..))	chr11:65178716-65178994(+)$1	1	161	187	13.4498
(((..(((((.....)))))...)))	chr12:125262965-125263229(-)$1	1	227	253	12.8418
(.((((.(((.....))))))).)).	chr1:44086543-44086762(+)$1	1	115	141	12.0426
(((((((.((.....)))).))))))	chr1:6508918-6509244(+)$1	1	141	167	10.7453
.(((((.(((.....))).)))))..	chr9:99083286-99083662(-)$1	1	140	166	10.4988
(((.((((((.....)))))).))))	chr11:65380917-65381271(-)$1	1	155	181	12.1409
((((((((((.....))).)))))).	chr19:3543285-3543544(-)$1	1	29	55	13.0875
(...((((((.....)).))))))).	chr16:66638621-66638869(+)$1	1	206	232	11.3226
.(((((((((.....)))))))))))	chr22:29191308-29191577(-)$1	1	75	101	13.4952
((((((((((.....)))))))).))	chr15:44086006-44086285(+)$1	1	138	164	10.6598
((((((..((.....))..)))))))	chr19:47724735-47725071(-)$1	1	47	73	10.1465
((.((.(.((.....)).).)).)))	chr1:1375048-1375264(+)$1	1	19	45	12.0120
((((((((((......))))))))))	chr16:74485838-74486097(-)$1	1	227	253	10.4033
((.(((((((......))))))).))	chr2:129075951-129076234(-)$1	1	203	229	9.6585
(.((((((((.....))))).))).)	chr1:29652047-29652307(+)$1	1	125	151	12.3753
((((((((((.....)))))))..))	chr22:39131058-39131330(-)$1	1	226	252	13.2986
(((((.((((.....)))))))))..	chr22:43267197-43267477(-)$1	1	92	118	10.8678
((.(..((((.....))))..).)))	chr16:4562435-4562652(-)$1	1	87	113	10.9711
(.(((((.((.....))..))))).)	chr16:2757350-2757627(+)$1	1	124	150	11.5961
((((((((((.....)))))))))).	chr19:8438838-8439199(+)$1	1	224	250	13.7206
)))))(((((.....)).)))(((((	chr8:134256499-134256705(-)$1	1	59	85	11.8863
(..((..(((.....))).)).))))	chr1:2518429-2518678(+)$1	1	62	88	12.8711
..(((..(((.....)))...)))..	chr22:50716560-50716794(-)$1	1	203	229	13.2405
((((((((((......))))))))))	chr17:79801361-79801584(-)$1	1	41	67	10.4033
.(((((((((.....)))))))...)	chr14:21560335-21560575(-)$1	1	115	141	13.0980
((((((((((.....)))....))))	chr17:80401387-80401645(-)$1	1	49	75	13.2619

#PSSM
c : 0.20	f : 0.16	g : 0.11	= : 0.11	e : 0.11	[ : 0.07	$ : 0.03	: : 0.03	b : 0.03	d : 0.03	& : 0.01	" : 0.01	i : 0.01	h : 0.01	
f : 0.18	c : 0.18	= : 0.11	e : 0.11	g : 0.07	[ : 0.07	" : 0.05	$ : 0.03	b : 0.03	i : 0.03	& : 0.01	a : 0.01	h : 0.01	d : 0.01	! : 0.01	
f : 0.18	e : 0.12	c : 0.12	= : 0.11	[ : 0.09	g : 0.07	" : 0.05	b : 0.05	d : 0.03	i : 0.03	h : 0.03	& : 0.01	$ : 0.01	! : 0.01	
g : 0.18	f : 0.16	e : 0.12	= : 0.11	c : 0.07	b : 0.05	[ : 0.05	" : 0.03	d : 0.03	i : 0.03	h : 0.03	$ : 0.01	# : 0.01	! : 0.01	a : 0.01	
f : 0.18	g : 0.14	e : 0.12	= : 0.11	[ : 0.07	d : 0.07	c : 0.05	b : 0.05	# : 0.03	i : 0.03	! : 0.03	h : 0.03	a : 0.01	
f : 0.18	e : 0.18	g : 0.14	= : 0.11	d : 0.07	b : 0.05	! : 0.05	c : 0.03	# : 0.03	i : 0.03	h : 0.03	[ : 0.03	
[ : 0.24	e : 0.14	g : 0.12	= : 0.09	f : 0.09	d : 0.09	! : 0.05	# : 0.03	b : 0.03	i : 0.01	h : 0.01	a : 0.01	c : 0.01	
c : 0.37	e : 0.12	g : 0.11	[ : 0.09	= : 0.09	d : 0.09	f : 0.03	# : 0.01	i : 0.01	h : 0.01	! : 0.01	
c : 0.35	b : 0.16	e : 0.12	g : 0.11	= : 0.09	d : 0.05	f : 0.03	[ : 0.01	i : 0.01	h : 0.01	
c : 0.35	b : 0.16	g : 0.11	e : 0.11	= : 0.09	d : 0.05	a : 0.03	f : 0.03	i : 0.01	h : 0.01	
n : 0.90	o : 0.07	m : 0.01	
n : 0.90	o : 0.07	m : 0.01	
n : 0.90	o : 0.07	m : 0.01	
n : 0.90	o : 0.07	m : 0.01	
n : 0.90	o : 0.07	c : 0.01	
c : 0.33	b : 0.16	e : 0.11	g : 0.09	o : 0.07	= : 0.05	d : 0.05	a : 0.03	f : 0.03	i : 0.01	h : 0.01	
c : 0.35	b : 0.16	g : 0.11	e : 0.11	= : 0.09	d : 0.05	] : 0.03	f : 0.03	i : 0.01	h : 0.01	
c : 0.33	e : 0.12	g : 0.11	] : 0.09	= : 0.09	d : 0.07	2 : 0.05	f : 0.03	4 : 0.01	b : 0.01	i : 0.01	h : 0.01	
e : 0.14	g : 0.12	d : 0.12	= : 0.11	2 : 0.09	f : 0.07	] : 0.07	b : 0.05	c : 0.03	4 : 0.03	3 : 0.03	i : 0.03	h : 0.01	a : 0.01	
e : 0.20	g : 0.14	= : 0.11	f : 0.11	4 : 0.07	d : 0.07	2 : 0.05	b : 0.05	3 : 0.03	i : 0.03	] : 0.03	h : 0.03	c : 0.01	
g : 0.14	f : 0.12	e : 0.12	= : 0.11	3 : 0.09	4 : 0.07	d : 0.07	] : 0.05	c : 0.03	2 : 0.03	i : 0.03	h : 0.03	b : 0.03	
g : 0.16	f : 0.14	e : 0.12	= : 0.11	c : 0.05	3 : 0.05	4 : 0.05	d : 0.05	2 : 0.03	a : 0.03	b : 0.03	i : 0.03	] : 0.03	h : 0.03	
f : 0.18	e : 0.12	= : 0.11	c : 0.11	] : 0.09	g : 0.07	3 : 0.07	2 : 0.07	4 : 0.05	i : 0.03	h : 0.03	b : 0.01	
f : 0.22	c : 0.14	= : 0.11	e : 0.11	g : 0.09	] : 0.09	2 : 0.05	b : 0.03	i : 0.03	4 : 0.01	a : 0.01	h : 0.01	d : 0.01	3 : 0.01	
f : 0.18	c : 0.18	= : 0.11	e : 0.11	g : 0.09	] : 0.07	b : 0.05	: : 0.03	2 : 0.03	4 : 0.01	a : 0.01	i : 0.01	h : 0.01	d : 0.01	3 : 0.01	
c : 0.22	f : 0.14	] : 0.09	g : 0.07	= : 0.07	: : 0.07	e : 0.07	d : 0.05	2 : 0.05	b : 0.05	4 : 0.01	J : 0.01	i : 0.01	h : 0.01	

#score	655.6589870717311
#seq	54
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_CDS_m3_run2.txt

#BEAR
dddd!!cccmmmmccc4444dd	chr6:33169080-33169316(+)$1	236	135	157	9.8154
dddd[ddddmmmmdddddddd3	chr19:10610324-10610617(-)$1	293	231	253	12.8961
ffbb[ddddmmmmdddd]bb]f	chr2:65540598-65540845(-)$1	247	152	174	12.8606
d####ddddmmmmdddd]dddd	chr17:62496625-62496862(-)$1	237	43	65	13.9230
"dddd[ddddllldddd]dddd	chr17:74308922-74309170(-)$1	248	58	80	10.1212
bbbb[ddddmmmmdddd]bb::	chr10:101379836-101380098(-)$1	262	112	134	11.1258
cc"""ddddmmmmdddd22ccc	chr2:208631716-208632021(-)$1	305	212	234	14.4759
bb[a[ddddmmmmdddd]a]bb	chr14:54416994-54417235(-)$1	241	12	34	13.1399
e[cccddddmmmmdddd22ccc	chr6:32939558-32939789(+)$1	231	114	136	13.9767
ggg!!ddddmmmmdddd]gggg	chr12:81471899-81472168(+)$1	269	146	168	13.8619
ccc!!ddddmmmmdddd]cccb	chr2:64189204-64189518(-)$1	314	23	45	14.1772
fffffddddmmmmdddd::ddd	chr10:3824083-3824325(-)$1	242	69	91	10.7157
ddddaddddmmmmdddd]a]dd	chr16:18812631-18812965(-)$1	334	141	163	13.5115
""cccddddmmmmdddd]ccc3	chr8:8234766-8235009(-)$1	243	4	26	13.5792
:ddddddddmmmmdddd]dddd	chr1:8074246-8074491(-)$1	245	168	190	12.2595
gg"""ddddmmmmdddd333gg	chr18:3457454-3457707(+)$1	253	36	58	14.1538
eeee!!cccmmmmccc22eeee	chr6:30711745-30712009(-)$1	264	185	207	9.0325
ffff:ddddmmmmddddiiiii	chr10:7791148-7791387(+)$1	239	115	137	11.2008
e[cccddddmmmmdddd22ccc	chr6:32939513-32939732(+)$1	219	159	181	13.9767
dddd[ddddmmmmdddd]dddd	chr6:1313871-1314147(+)$1	276	7	29	13.8899
ccc!!ddddmmmmdddd22ccc	chr14:69256598-69256867(-)$1	269	129	151	14.6287
ccc!!ddddllldddd22ccc:	chr12:6438384-6438653(-)$1	269	196	218	10.1749
ddd!!ddddmmmmdddd22ddd	chr2:218712945-218713205(-)$1	260	52	74	14.3867
!!bb[ddddmmmmdddd22bbb	chr1:234744856-234745064(-)$1	208	83	105	13.4625
:ccc[ddddmmmmdddd]ccc:	chr19:5719770-5720046(-)$1	276	62	84	12.6178
dddd[ddddmmmmdddddddd2	chr4:124323186-124323438(+)$1	252	60	82	12.6713
[ccc!!ddddllldddd]cccc	chr14:105477798-105478071(-)$1	273	219	241	11.3282
Gbb!!ddddmmmmdddd22bb:	chr16:68055664-68055946(-)$1	282	243	265	12.2797
:ccc[ddddmmmmdddd]ccc:	chr17:73658718-73658953(-)$1	235	213	235	12.6178
ddbb[ddddmmmmdddd]bb]d	chr17:25636100-25636328(+)$1	228	167	189	13.2121
dddd[ddddmmmmdddd22ddd	chr1:27238190-27238457(-)$1	267	218	240	14.2087
e[bb[ddddmmmmdddd]bb]e	chr2:202025147-202025431(+)$1	284	174	196	13.2084
ggggg[cccmmmmcccgggggg	chr2:74709195-74709449(-)$1	254	21	43	8.4994
eee[a[ddddllldddd]a]ee	chr20:419665-419909(-)$1	244	2	24	10.2724
eeeeeddddmmmmdddd]eeee	chr7:150934861-150935099(+)$1	238	49	71	12.4372
ddd[ddddammmma]ddddddd	chr20:44518910-44519134(-)$1	224	157	179	10.4633
e[ccc[cccmmmmccc]cccee	chr12:49431432-49431698(-)$1	266	80	102	8.6533
"""a[ddddmmmmdddd]a]dd	chr10:77159670-77159930(-)$1	260	105	127	14.1498
cccc[ddddooooooddddccc	chr9:19116165-19116443(-)$1	278	217	239	9.5676
gggg[ddddmmmmdddd]gggg	chr2:241569802-241570050(+)$1	248	8	30	13.7095
c[cccddddmmmmdddd22ccc	chr22:37964251-37964501(+)$1	250	187	209	14.0094
dddd[ddddmmmmdddd22ddd	chr8:121823660-121823902(-)$1	242	0	22	14.2087
f####ddddmmmmdddd333ff	chr6:11190492-11190801(-)$1	309	208	230	13.8305
f####ddddmmmmdddd22fff	chr16:22337353-22337596(+)$1	243	13	35	13.6968
ffff[ddddmmmmdddd22fff	chr8:121823733-121823987(-)$1	254	85	107	13.3496

#otherMatches

#Seq PSSM
GCCACACUCACGAGAGCAUCUG	chr6:33169080-33169316(+)$1	236	135	157	9.8154
GGCCAUGUUCACCAACGGGCUG	chr19:10610324-10610617(-)$1	293	231	253	12.8961
GCUACCACUGCGGAGUGAUGUG	chr2:65540598-65540845(-)$1	247	152	174	12.8606
GAAGAACUGCUCGCAGUACCAA	chr17:62496625-62496862(-)$1	237	43	65	13.9230
CUGUUCUCCUCCCAGGAUGACA	chr17:74308922-74309170(-)$1	248	58	80	10.1212
gcgugggccggggggccggcgg	chr10:101379836-101380098(-)$1	262	112	134	11.1258
CCGCAGGGGACUACCCCGAGGC	chr2:208631716-208632021(-)$1	305	212	234	14.4759
GUCAGGAUUAGCCGAUCGUUAC	chr14:54416994-54417235(-)$1	241	12	34	13.1399
AGCUCAGCCAAUUGGCUUGGAG	chr6:32939558-32939789(+)$1	231	114	136	13.9767
GGGAUGCAGGGCACUGUCCUCC	chr12:81471899-81472168(+)$1	269	146	168	13.8619
CCUCUCAACACGAGUUGCAGGA	chr2:64189204-64189518(-)$1	314	23	45	14.1772
CCUCCAGAGGACACUCUCAUCA	chr10:3824083-3824325(-)$1	242	69	91	10.7157
GUGGCCUGCGCUUGUAGAGACU	chr16:18812631-18812965(-)$1	334	141	163	13.5115
CGAGCUUCCCCAAGGAGUGCUG	chr8:8234766-8235009(-)$1	243	4	26	13.5792
AUGUGGUUUUAAGAAACUCACA	chr1:8074246-8074491(-)$1	245	168	190	12.2595
GUCCGUGAUGGGCAUCAAAAAC	chr18:3457454-3457707(+)$1	253	36	58	14.1538
GGCGCCCACCCCUGUGUCCGCC	chr6:30711745-30712009(-)$1	264	185	207	9.0325
GCCUCAGCUCUACAGCUUUCUC	chr10:7791148-7791387(+)$1	239	115	137	11.2008
AGCUCAGCCAAUUGGCUUGGAG	chr6:32939513-32939732(+)$1	219	159	181	13.9767
GCGGCGCCCUGCAGGGCCCUGC	chr6:1313871-1314147(+)$1	276	7	29	13.8899
CACAACGCUGAAGAGCGCCGUG	chr14:69256598-69256867(-)$1	269	129	151	14.6287
CUCUAAGGACCGUCCUGCGAGA	chr12:6438384-6438653(-)$1	269	196	218	10.1749
AUGCUGGCCACACGGCCCCCAU	chr2:218712945-218713205(-)$1	260	52	74	14.3867
CCGCCAAGGACAUCCUUUUGCA	chr1:234744856-234745064(-)$1	208	83	105	13.4625
CUGUGGGGCCGAGGCCCGGCAA	chr19:5719770-5720046(-)$1	276	62	84	12.6178
GGGUUCCUUGAAAGAGGACCUG	chr4:124323186-124323438(+)$1	252	60	82	12.6713
AGGCACCUGCAGAGCAGCGCCU	chr14:105477798-105478071(-)$1	273	219	241	11.3282
UGGUUGUCAAUUAUGAUUUCCC	chr16:68055664-68055946(-)$1	282	243	265	12.2797
CACAGGUCCAAGAGGACGUGUU	chr17:73658718-73658953(-)$1	235	213	235	12.6178
CACAUAAUGGAGACAUUCUGAU	chr17:25636100-25636328(+)$1	228	167	189	13.2121
CAAGCCUGUAUAGACAGCACUU	chr1:27238190-27238457(-)$1	267	218	240	14.2087
GUGUAUGGUGUGGAUCAGACUC	chr2:202025147-202025431(+)$1	284	174	196	13.2084
GGCUGUCAUCGAGAUGCAGCUU	chr2:74709195-74709449(-)$1	254	21	43	8.4994
CUGUGACUGUGACAUGGCCUCG	chr20:419665-419909(-)$1	244	2	24	10.2724
GAGUGCAGCUGGUGCUGCCACU	chr7:150934861-150935099(+)$1	238	49	71	12.4372
GGGACUGCCAGCUGCGCAGCCC	chr20:44518910-44519134(-)$1	224	157	179	10.4633
CUAGCAGUGGGCACACAGCUGA	chr12:49431432-49431698(-)$1	266	80	102	8.6533
AGAAGUCGGGAUUCCGGGUACC	chr10:77159670-77159930(-)$1	260	105	127	14.1498
GCAUGCUGUGGCCAGACAGAUG	chr9:19116165-19116443(-)$1	278	217	239	9.5676
CUGGUGGCUCGCUGGCUCCUGG	chr2:241569802-241570050(+)$1	248	8	30	13.7095
CCGCAACCCCCACGGGUCCUGC	chr22:37964251-37964501(+)$1	250	187	209	14.0094
GGACCGCCACCAAUGGCUCGUU	chr8:121823660-121823902(-)$1	242	0	22	14.2087
CCAUGACUUAAAUGAGUGCAGC	chr6:11190492-11190801(-)$1	309	208	230	13.8305
UCAACGGGCACCCGCCCCAGGG	chr16:22337353-22337596(+)$1	243	13	35	13.6968
GGACCGCCACCAAUGGCUCGUU	chr8:121823733-121823987(-)$1	254	85	107	13.3496

#DB
((((..(((....)))....))	chr6:33169080-33169316(+)$1	1	135	157	9.8154
((((.((((....)))))))).	chr19:10610324-10610617(-)$1	1	231	253	12.8961
((((.((((....)))).)).)	chr2:65540598-65540845(-)$1	1	152	174	12.8606
(....((((....)))).))))	chr17:62496625-62496862(-)$1	1	43	65	13.9230
.((((.((((...)))).))))	chr17:74308922-74309170(-)$1	1	58	80	10.1212
))((.((((....)))).))..	chr10:101379836-101380098(-)$1	1	112	134	11.1258
((...((((....))))..)))	chr2:208631716-208632021(-)$1	1	212	234	14.4759
((.(.((((....)))).).))	chr14:54416994-54417235(-)$1	1	12	34	13.1399
(.(((((((....))))..)))	chr6:32939558-32939789(+)$1	1	114	136	13.9767
(((..((((....)))).))))	chr12:81471899-81472168(+)$1	1	146	168	13.8619
(((..((((....)))).)))(	chr2:64189204-64189518(-)$1	1	23	45	14.1772
)))))((((....))))..(((	chr10:3824083-3824325(-)$1	1	69	91	10.7157
(((((((((....)))).).))	chr16:18812631-18812965(-)$1	1	141	163	13.5115
..(((((((....)))).))).	chr8:8234766-8235009(-)$1	1	4	26	13.5792
.((((((((....)))).))))	chr1:8074246-8074491(-)$1	1	168	190	12.2595
((...((((....))))...))	chr18:3457454-3457707(+)$1	1	36	58	14.1538
((((..(((....)))..))))	chr6:30711745-30712009(-)$1	1	185	207	9.0325
)))).((((....))))(((((	chr10:7791148-7791387(+)$1	1	115	137	11.2008
(.(((((((....))))..)))	chr6:32939513-32939732(+)$1	1	159	181	13.9767
((((.((((....)))).))))	chr6:1313871-1314147(+)$1	1	7	29	13.8899
(((..((((....))))..)))	chr14:69256598-69256867(-)$1	1	129	151	14.6287
(((..((((...))))..))).	chr12:6438384-6438653(-)$1	1	196	218	10.1749
(((..((((....))))..)))	chr2:218712945-218713205(-)$1	1	52	74	14.3867
..((.((((....))))..)))	chr1:234744856-234745064(-)$1	1	83	105	13.4625
.(((.((((....)))).))).	chr19:5719770-5720046(-)$1	1	62	84	12.6178
((((.((((....)))))))).	chr4:124323186-124323438(+)$1	1	60	82	12.6713
.(((..((((...)))).))))	chr14:105477798-105478071(-)$1	1	219	241	11.3282
)((..((((....))))..)).	chr16:68055664-68055946(-)$1	1	243	265	12.2797
.(((.((((....)))).))).	chr17:73658718-73658953(-)$1	1	213	235	12.6178
((((.((((....)))).)).)	chr17:25636100-25636328(+)$1	1	167	189	13.2121
((((.((((....))))..)))	chr1:27238190-27238457(-)$1	1	218	240	14.2087
(.((.((((....)))).)).)	chr2:202025147-202025431(+)$1	1	174	196	13.2084
(((((.(((....)))))))))	chr2:74709195-74709449(-)$1	1	21	43	8.4994
(((.(.((((...)))).).))	chr20:419665-419909(-)$1	1	2	24	10.2724
(((((((((....)))).))))	chr7:150934861-150935099(+)$1	1	49	71	12.4372
(((.(((((....).)))))))	chr20:44518910-44519134(-)$1	1	157	179	10.4633
(.(((.(((....))).)))))	chr12:49431432-49431698(-)$1	1	80	102	8.6533
...(.((((....)))).).))	chr10:77159670-77159930(-)$1	1	105	127	14.1498
((((.((((......)))))))	chr9:19116165-19116443(-)$1	1	217	239	9.5676
((((.((((....)))).))))	chr2:241569802-241570050(+)$1	1	8	30	13.7095
(.(((((((....))))..)))	chr22:37964251-37964501(+)$1	1	187	209	14.0094
((((.((((....))))..)))	chr8:121823660-121823902(-)$1	1	0	22	14.2087
(....((((....))))...))	chr6:11190492-11190801(-)$1	1	208	230	13.8305
(....((((....))))..)))	chr16:22337353-22337596(+)$1	1	13	35	13.6968
((((.((((....))))..)))	chr8:121823733-121823987(-)$1	1	85	107	13.3496

#PSSM
d : 0.24	e : 0.15	f : 0.13	c : 0.13	g : 0.08	" : 0.06	: : 0.06	b : 0.04	! : 0.02	[ : 0.02	G : 0.02	
d : 0.26	c : 0.17	[ : 0.11	f : 0.08	g : 0.08	# : 0.06	b : 0.06	e : 0.06	" : 0.04	! : 0.02	
c : 0.26	d : 0.24	b : 0.13	# : 0.06	" : 0.06	g : 0.06	f : 0.06	e : 0.06	[ : 0.02	
d : 0.20	c : 0.20	! : 0.13	b : 0.11	# : 0.06	f : 0.06	" : 0.04	a : 0.04	e : 0.04	g : 0.04	[ : 0.04	
[ : 0.37	! : 0.20	c : 0.11	# : 0.06	d : 0.06	" : 0.04	a : 0.04	f : 0.02	: : 0.02	g : 0.02	e : 0.02	
d : 0.84	[ : 0.08	! : 0.06	
d : 0.91	c : 0.08	
d : 0.91	c : 0.08	
d : 0.88	c : 0.08	a : 0.02	
m : 0.88	d : 0.06	l : 0.02	o : 0.02	
m : 0.88	l : 0.08	o : 0.02	
m : 0.88	l : 0.08	o : 0.02	
m : 0.88	l : 0.06	d : 0.02	o : 0.02	
d : 0.86	c : 0.08	a : 0.02	o : 0.02	
d : 0.86	c : 0.08	] : 0.02	o : 0.02	
d : 0.91	c : 0.08	
d : 0.88	2 : 0.04	4 : 0.02	g : 0.02	] : 0.02	
] : 0.44	2 : 0.31	d : 0.08	3 : 0.04	4 : 0.02	: : 0.02	i : 0.02	g : 0.02	c : 0.02	
2 : 0.26	d : 0.17	c : 0.15	b : 0.08	a : 0.08	g : 0.06	3 : 0.04	e : 0.04	4 : 0.02	: : 0.02	i : 0.02	
c : 0.28	d : 0.24	b : 0.13	] : 0.08	g : 0.06	3 : 0.04	e : 0.04	f : 0.04	4 : 0.02	i : 0.02	
d : 0.31	c : 0.26	g : 0.08	e : 0.08	] : 0.06	b : 0.06	f : 0.06	: : 0.02	i : 0.02	
d : 0.28	c : 0.15	: : 0.11	e : 0.11	f : 0.08	g : 0.08	b : 0.06	3 : 0.04	i : 0.02	2 : 0.02	

#score	564.3396791555781
#seq	45
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_transcript_m2_run2.txt

#BEAR
dddd[eeeeeooooooeeeeedddd333ddd	chr17:19091288-19091507(+)$1	219	120	151	20.8113
dddd[eeeeeooooooeeeeedddd333ddd	chr17:19093390-19093627(-)$1	237	149	180	20.8113
dddd[eeeeeooooooeeeeedddd333ddd	chr17:19091312-19091520(+)$1	208	96	127	20.8113
=eeeee!!bboooooobb]eeeee:dddd[d	chr16:2580589-2580901(+)$1	312	131	162	12.8131
ggggg[eeeeennnnneeeee22ggggggg]	chr7:73007599-73007824(-)$1	225	149	180	12.4615
a[ccceeeeeooooooeeeee]ccca22ddd	chr17:19093354-19093577(-)$1	223	142	173	21.2114
dddd[eeeeeooooooeeeeedddd::bbnn	chr17:19015764-19016034(-)$1	270	165	196	15.4416
a[ccccccbboooooobb]ccc]ccc]a333	chr14:105934876-105935124(+)$1	248	8	39	13.5876
a[ccceeeeeooooooeeeee]ccca22ddd	chr17:19091320-19091544(+)$1	224	131	162	21.2114
dddd"""cccooooooccc333dddd]ccce	chr6:26055915-26056141(-)$1	226	65	96	14.3162
dddd[eeeeeooooooeeeeedddd333ddd	chr17:19093377-19093590(-)$1	213	112	143	20.8113
ffffff!!bboooooobb22ffffff22ccc	chr9:116999867-117000095(+)$1	228	83	114	12.3552
ffccceeeeeooooooeeeee]cccDDDDFF	chr17:18965272-18965534(+)$1	262	75	106	14.4717
a[ccceeeeeooooooeeeee]ccca22ddd	chr17:19091307-19091512(+)$1	205	144	175	21.2114
!ccc!!eeeeennnnneeeee22ccc]dddd	chr20:26189987-26190258(-)$1	271	95	126	15.0592
2ddddeeeeeooooooeeeee::ggggggg[	chr20:62574240-62574494(-)$1	254	127	158	15.2932
a[ccceeeeeooooooeeeee]ccca22ddd	chr17:19093343-19093553(-)$1	210	118	149	21.2114

#otherMatches

#Seq PSSM
aggaagagagguagcguuuucuccugagcgu	chr17:19091288-19091507(+)$1	219	120	151	20.8113
aggaagagagguagcguuuucuccugaacgu	chr17:19093390-19093627(-)$1	237	149	180	20.8113
aggaagagagguagcguuuucuccugagcgu	chr17:19091312-19091520(+)$1	208	96	127	20.8113
GCCAGGGAAGAACCACCUGCCUGGGCAGGGC	chr16:2580589-2580901(+)$1	312	131	162	12.8131
UGGGAGAGGCCAGGAGGGCCUGAUCCCAGGA	chr7:73007599-73007824(-)$1	225	149	180	12.4615
cuggcguugcuuggcugcaacugccgucagc	chr17:19093354-19093577(-)$1	223	142	173	21.2114
aggaagagagguagcguuuucuccugagcgu	chr17:19015764-19016034(-)$1	270	165	196	15.4416
GGAGUGCCCCAAGUUAGGAGGCAACUGCAGG	chr14:105934876-105935124(+)$1	248	8	39	13.5876
cuggcguugcuuggcugcaacugccgucagc	chr17:19091320-19091544(+)$1	224	131	162	21.2114
AGCCCAAGGCCGCUAAGCCCAAGGUUGUCAA	chr6:26055915-26056141(-)$1	226	65	96	14.3162
aggaagagagguagcguuuucuccugaacgu	chr17:19093377-19093590(-)$1	213	112	143	20.8113
GGAGACAAAGGAUCCAUUGGGUUUCCCGGGC	chr9:116999867-117000095(+)$1	228	83	114	12.3552
cuggcguugcuuggcugcaacugccgucagc	chr17:18965272-18965534(+)$1	262	75	106	14.4717
cuggcguugcuuggcugcaacugccgucagc	chr17:19091307-19091512(+)$1	205	144	175	21.2114
AGCGUUGGCUCCCCCUGGGCCUUUGCGGUGC	chr20:26189987-26190258(-)$1	271	95	126	15.0592
UGGGAGGCUCCUGACUGAGCCACCUGGAGGG	chr20:62574240-62574494(-)$1	254	127	158	15.2932
cuggcguugcuuggcugcaacugccgucagc	chr17:19093343-19093553(-)$1	210	118	149	21.2114

#DB
((((.(((((......)))))))))...)))	chr17:19091288-19091507(+)$1	1	120	151	20.8113
((((.(((((......)))))))))...)))	chr17:19093390-19093627(-)$1	1	149	180	20.8113
((((.(((((......)))))))))...)))	chr17:19091312-19091520(+)$1	1	96	127	20.8113
)(((((..((......)).))))).((((.(	chr16:2580589-2580901(+)$1	1	131	162	12.8131
(((((.(((((.....)))))..))))))).	chr7:73007599-73007824(-)$1	1	149	180	12.4615
(.((((((((......))))).))))..)))	chr17:19093354-19093577(-)$1	1	142	173	21.2114
((((.(((((......)))))))))..((..	chr17:19015764-19016034(-)$1	1	165	196	15.4416
(.((((((((......)).))).))).)...	chr14:105934876-105935124(+)$1	1	8	39	13.5876
(.((((((((......))))).))))..)))	chr17:19091320-19091544(+)$1	1	131	162	21.2114
((((...(((......)))...)))).))))	chr6:26055915-26056141(-)$1	1	65	96	14.3162
((((.(((((......)))))))))...)))	chr17:19093377-19093590(-)$1	1	112	143	20.8113
((((((..((......))..))))))..)))	chr9:116999867-117000095(+)$1	1	83	114	12.3552
))((((((((......))))).)))((((((	chr17:18965272-18965534(+)$1	1	75	106	14.4717
(.((((((((......))))).))))..)))	chr17:19091307-19091512(+)$1	1	144	175	21.2114
.(((..(((((.....)))))..))).))))	chr20:26189987-26190258(-)$1	1	95	126	15.0592
.))))(((((......)))))..(((((((.	chr20:62574240-62574494(-)$1	1	127	158	15.2932
(.((((((((......))))).))))..)))	chr17:19093343-19093553(-)$1	1	118	149	21.2114

#PSSM
d : 0.35	a : 0.29	f : 0.11	= : 0.05	g : 0.05	! : 0.05	2 : 0.05	
d : 0.41	[ : 0.29	f : 0.11	e : 0.05	g : 0.05	c : 0.05	
d : 0.41	c : 0.41	e : 0.05	g : 0.05	f : 0.05	
d : 0.41	c : 0.41	e : 0.05	g : 0.05	f : 0.05	
c : 0.35	[ : 0.29	e : 0.05	g : 0.05	" : 0.05	f : 0.05	! : 0.05	d : 0.05	
e : 0.70	[ : 0.05	c : 0.05	" : 0.05	f : 0.05	! : 0.05	
e : 0.76	! : 0.11	c : 0.05	" : 0.05	
e : 0.76	! : 0.11	c : 0.11	
e : 0.76	b : 0.17	c : 0.05	
e : 0.76	b : 0.17	c : 0.05	
o : 0.88	e : 0.11	
o : 0.88	n : 0.11	
o : 0.88	n : 0.11	
o : 0.88	n : 0.11	
o : 0.88	n : 0.11	
o : 0.88	n : 0.11	
e : 0.76	b : 0.17	c : 0.05	
e : 0.76	b : 0.17	c : 0.05	
e : 0.76	] : 0.11	c : 0.05	2 : 0.05	
e : 0.82	c : 0.05	3 : 0.05	2 : 0.05	
e : 0.82	c : 0.05	3 : 0.05	f : 0.05	
d : 0.29	] : 0.29	2 : 0.11	e : 0.05	c : 0.05	3 : 0.05	f : 0.05	: : 0.05	
d : 0.35	c : 0.29	2 : 0.11	e : 0.05	] : 0.05	f : 0.05	: : 0.05	
c : 0.41	d : 0.35	g : 0.11	e : 0.05	f : 0.05	
c : 0.41	d : 0.35	g : 0.11	: : 0.05	f : 0.05	
3 : 0.23	a : 0.23	d : 0.11	g : 0.11	c : 0.11	: : 0.05	f : 0.05	D : 0.05	
2 : 0.29	3 : 0.23	] : 0.17	g : 0.11	d : 0.05	: : 0.05	D : 0.05	
2 : 0.29	3 : 0.23	d : 0.11	g : 0.11	b : 0.05	a : 0.05	c : 0.05	D : 0.05	
d : 0.58	g : 0.11	c : 0.11	b : 0.05	3 : 0.05	D : 0.05	
d : 0.52	g : 0.11	c : 0.11	[ : 0.05	n : 0.05	3 : 0.05	F : 0.05	
d : 0.58	] : 0.05	n : 0.05	3 : 0.05	e : 0.05	c : 0.05	F : 0.05	[ : 0.05	

#score	293.89088111828823
#seq	17
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_CDS_m3_run1.txt

#BEAR
eeeeeqqqqqqqqeeeee5	chrX:53563473-53563728(-)$1	255	83	102	13.1803
iiiiiqqqqqqqqiiiiii	chr2:71360974-71361248(+)$1	274	29	48	14.1389
bbcccqqqqqqqqccc]bb	chr17:76117561-76117805(-)$1	244	151	170	13.1962
fffbbqqqqqqqqbb]fff	chr21:47613507-47613726(-)$1	219	22	41	13.0133
eee[aqqqqqqqqa]eeee	chr7:43540205-43540415(+)$1	210	78	97	13.9902
gggggqqqqqqqqgggggg	chr1:27105556-27105824(+)$1	268	21	40	14.1665
[ddddqqqqqqqqddddcc	chr18:55282771-55283003(-)$1	232	173	192	13.9721
fffffqqqqqqqqffffff	chr20:39721066-39721310(+)$1	244	172	191	13.2435
e!!bbqqqqqqqqbb22ee	chr4:73968001-73968278(-)$1	277	154	173	13.0345
[ddddqqqqqqqqdddd22	chr1:150528500-150528744(+)$1	244	97	116	13.5880
!!cccqqqqqqqqccc22d	chr5:145883286-145883535(+)$1	249	137	156	13.9270
b!!bbqqqqqqqqbb333b	chr14:65237507-65237785(-)$1	278	143	162	13.0573
=====qqqqqqqq======	chr4:69202671-69203023(-)$1	352	258	277	14.2401
hhhhhqqqqqqqqhhhhhh	chr17:80218661-80218945(-)$1	284	186	205	12.4951
[ddddqqqqqqqqdddd33	chr3:37368311-37368562(+)$1	251	33	52	13.9978
gggggqqqqqqqqgggggg	chr1:94341960-94342217(-)$1	257	132	151	14.1665
"ddddqqqqqqqqddddcc	chr9:100777600-100777819(+)$1	219	127	146	13.8474
c[cccqqqqqqqqccc]cc	chr22:50297245-50297529(-)$1	284	264	283	14.3571
gggggqqqqqqqqgggggg	chr5:71491259-71491569(+)$1	310	213	232	14.1665
eeeeeqqqqqqqqeeeee:	chr1:235377157-235377416(-)$1	259	192	211	13.1527
ddd[aqqqqqqqqadddd:	chr17:38244367-38244603(+)$1	236	200	219	12.8734
cccbbqqqqqqqqbb]ccc	chr16:89367073-89367337(-)$1	264	240	259	13.3919
"ddddqqqqqqqqddddcc	chr9:100777545-100777747(+)$1	202	182	201	13.8474
hhhhhqqqqqqqqhhhhhh	chr1:90493079-90493349(+)$1	270	211	230	12.4951
eeeeeqqqqqqqqeeeeeD	chr18:55282834-55283054(-)$1	220	3	22	12.9496
#bb[aqqqqqqqqa]bb44	chr1:109241858-109242095(+)$1	237	167	186	12.6313
e[cccqqqqqqqqccceee	chr17:40371745-40371993(-)$1	248	197	216	14.2670
=====qqqqqqqq======	chr16:4721228-4721519(+)$1	291	36	55	14.2401
eeeeeqqqqqqqqeeeee:	chr10:71151931-71152164(+)$1	233	109	128	13.1527
c!!bbqqqqqqqqbb22cc	chr6:44218154-44218386(+)$1	232	103	122	13.1452
eeeeeqqqqqqqqeeeee:	chr6:44218186-44218427(+)$1	241	215	234	13.1527
::cccqqqqqqqqcccddd	chr20:35236175-35236421(+)$1	246	81	100	11.8768
eeeeeqqqqqqqqeeeee:	chr2:99977989-99978356(+)$1	367	291	310	13.1527
a[cccqqqqqqqqccc]a:	chr4:140291409-140291651(+)$1	242	3	22	13.4594
"""bbqqqqqqqqbbeeee	chr2:190340034-190340290(+)$1	256	107	126	13.2364
gggggqqqqqqqqgggggg	chr17:34151029-34151304(+)$1	275	179	198	14.1665
ccc[aqqqqqqqqa]cccB	chr9:99699330-99699572(-)$1	242	38	57	13.1675
[ddddqqqqqqqqddddhh	chr19:10488907-10489149(-)$1	242	76	95	13.5601
iiiiiqqqqqqqqiiiiii	chr11:129992096-129992363(+)$1	267	12	31	14.1389
fffffqqqqqqqqffffff	chr17:38296684-38296934(+)$1	250	103	122	13.2435
cddddqqqqqqqqdddd]c	chr13:98666203-98666440(+)$1	237	80	99	13.8297
hhhhhqqqqqqqqhhhhhh	chr19:10478991-10479329(-)$1	338	18	37	12.4951
f[cccqqqqqqqqcccfff	chr21:40883510-40883764(+)$1	254	172	191	14.0642
!a!!aqqqqqqqqa22a22	chr1:235377097-235377346(-)$1	249	94	113	13.2196
[ddddqqqqqqqqdddddd	chr18:55282803-55283034(-)$1	231	204	223	13.6516
eeeeeqqqqqqqqeeeeec	chr1:16891198-16891504(-)$1	306	215	234	13.9717
fffffqqqqqqqqffffff	chr21:47612478-47612718(-)$1	240	214	233	13.2435
fffffqqqqqqqqffffff	chr21:47612594-47612833(-)$1	239	97	116	13.2435
e:cccqqqqqqqqcccggg	chrX:135593971-135594255(+)$1	284	187	206	13.2318
c[cccqqqqqqqqccc]cc	chr6:26156969-26157220(+)$1	251	226	245	14.3571
fffffqqqqqqqqffffff	chr1:26139047-26139290(+)$1	243	75	94	13.2435
:ddddqqqqqqqqdddd:c	chr9:80646048-80646334(-)$1	286	41	60	11.7699
ee!!aqqqqqqqqa22eee	chr3:121416149-121416396(-)$1	247	203	222	13.5705
eeeeeqqqqqqqqeeeee5	chr3:25654063-25654295(-)$1	232	147	166	13.1803
eeebbqqqqqqqqbb]eee	chr21:47613498-47613706(-)$1	208	2	21	13.3821
fffffqqqqqqqqffffff	chr7:128497131-128497379(+)$1	248	183	202	13.2435
[ddddqqqqqqqqdddd]d	chr21:46951351-46951628(-)$1	277	197	216	13.8240
fffffqqqqqqqqffffff	chr19:11339932-11340203(-)$1	271	248	267	13.2435
!ddddqqqqqqqqdddd22	chr22:41650211-41650572(-)$1	361	179	198	13.5569

#otherMatches

#Seq PSSM
UCUGCUUUCUUAUGCAGGU	chrX:53563473-53563728(-)$1	255	83	102	13.1803
AUGCAAAUCUAUAUGCAUG	chr2:71360974-71361248(+)$1	274	29	48	14.1389
UCGGAGUUCAUGAUCCAGG	chr17:76117561-76117805(-)$1	244	151	170	13.1962
GCCACACACAGACGUAGGU	chr21:47613507-47613726(-)$1	219	22	41	13.0133
CUCACAUGAUUCAGGGAGA	chr7:43540205-43540415(+)$1	210	78	97	13.9902
UUUUAAAGGAGUAUGAGGU	chr1:27105556-27105824(+)$1	268	21	40	14.1665
UCAGAUCAUUAUUUCUGUG	chr18:55282771-55283003(-)$1	232	173	192	13.9721
CAAGGUUCUUGAUUCUUGG	chr20:39721066-39721310(+)$1	244	172	191	13.2435
UGCUCAAGAAAAAGAAAAG	chr4:73968001-73968278(-)$1	277	154	173	13.0345
CUGGCGUUCUGUGGCCACU	chr1:150528500-150528744(+)$1	244	97	116	13.5880
AAGCCCGCAUUGAGGCAAG	chr5:145883286-145883535(+)$1	249	137	156	13.9270
AGAGCAUCAUCCGGCAGAU	chr14:65237507-65237785(-)$1	278	143	162	13.0573
GUUCAGGCACAGAUGGAUC	chr4:69202671-69203023(-)$1	352	258	277	14.2401
GGUGUCAGUAAAUACAUCA	chr17:80218661-80218945(-)$1	284	186	205	12.4951
AUCUCAAAUGGAAGAGAAA	chr3:37368311-37368562(+)$1	251	33	52	13.9978
GUGGCCAAAGGGAGUCAUU	chr1:94341960-94342217(-)$1	257	132	151	14.1665
UGCAGAAACAGAACUGUUC	chr9:100777600-100777819(+)$1	219	127	146	13.8474
CCGGGAGCCACUGCCCAGG	chr22:50297245-50297529(-)$1	284	264	283	14.3571
AGUCUGUCAAGAAAGAUUC	chr5:71491259-71491569(+)$1	310	213	232	14.1665
GUGCUAUCCACCAGGCAUG	chr1:235377157-235377416(-)$1	259	192	211	13.1527
GCUACGACCCUGAGAGCGA	chr17:38244367-38244603(+)$1	236	200	219	12.8734
GCCUCAGAUAGGAGACGGC	chr16:89367073-89367337(-)$1	264	240	259	13.3919
UGCAGAAACAGAACUGUUC	chr9:100777545-100777747(+)$1	202	182	201	13.8474
ACAUUUCGGUUCUAAUGUA	chr1:90493079-90493349(+)$1	270	211	230	12.4951
GAGGUGAGUCCUGACCUUG	chr18:55282834-55283054(-)$1	220	3	22	12.9496
GUCGUGAUAGGAAAGGGGA	chr1:109241858-109242095(+)$1	237	167	186	12.6313
GCAGAAGCAGGUGUCUCUG	chr17:40371745-40371993(-)$1	248	197	216	14.2670
GGUUGAGCUGGACUGACCC	chr16:4721228-4721519(+)$1	291	36	55	14.2401
UUCCCUAAAUGCUGGGAAA	chr10:71151931-71152164(+)$1	233	109	128	13.1527
UGAUGACAUCACCCAAGAG	chr6:44218154-44218386(+)$1	232	103	122	13.1452
GUGUUGGGUAAUAGACACA	chr6:44218186-44218427(+)$1	241	215	234	13.1527
UUUCUUUUUAAAUAGAGGC	chr20:35236175-35236421(+)$1	246	81	100	11.8768
AAGGUUGGUUAAUACUUUA	chr2:99977989-99978356(+)$1	367	291	310	13.1527
GAGCUCAAAAGAAAGCCCA	chr4:140291409-140291651(+)$1	242	3	22	13.4594
AAGCCUUGGAGAUGGGGAG	chr2:190340034-190340290(+)$1	256	107	126	13.2364
AUGUAGAUAAAGAUGCGUA	chr17:34151029-34151304(+)$1	275	179	198	14.1665
GCAGCUCCUCCAUGAUGUC	chr9:99699330-99699572(-)$1	242	38	57	13.1675
CGCCACUGGGGGAUGGCCA	chr19:10488907-10489149(-)$1	242	76	95	13.5601
GUUUUUGUGUUUCAGAAUA	chr11:129992096-129992363(+)$1	267	12	31	14.1389
CCGUUCUCCGUAAGAUGGC	chr17:38296684-38296934(+)$1	250	103	122	13.2435
UAACAAUGAAACGUGUUCG	chr13:98666203-98666440(+)$1	237	80	99	13.8297
uagcugcaagggaggcugg	chr19:10478991-10479329(-)$1	338	18	37	12.4951
GAGAAGACGAAGAUUCCUA	chr21:40883510-40883764(+)$1	254	172	191	14.0642
aUGACAACAAUGAGGAAGA	chr1:235377097-235377346(-)$1	249	94	113	13.2196
UCAGAUCAUUAUUUCUGUG	chr18:55282803-55283034(-)$1	231	204	223	13.6516
AAUUGUGGAUGCUUAAUUC	chr1:16891198-16891504(-)$1	306	215	234	13.9717
Uacauggagacagauguac	chr21:47612478-47612718(-)$1	240	214	233	13.2435
uacauggagacagauguac	chr21:47612594-47612833(-)$1	239	97	116	13.2435
ACGAUGAUAUUUAAUCCCU	chrX:135593971-135594255(+)$1	284	187	206	13.2318
CAGUUAAACCCAAGGCGGC	chr6:26156969-26157220(+)$1	251	226	245	14.3571
AGUGGGACCCUGGCCGCUU	chr1:26139047-26139290(+)$1	243	75	94	13.2435
cccggagcucgucccggac	chr9:80646048-80646334(-)$1	286	41	60	11.7699
GUGCCAAGAAAUAGAAAUU	chr3:121416149-121416396(-)$1	247	203	222	13.5705
CAAUUAAAGGUAAAGUUGG	chr3:25654063-25654295(-)$1	232	147	166	13.1803
GCCACACACAGACGUAGGU	chr21:47613498-47613706(-)$1	208	2	21	13.3821
GGCAACUACCUCAUUGCCA	chr7:128497131-128497379(+)$1	248	183	202	13.2435
GGGUCUUCAACUCGGCCGG	chr21:46951351-46951628(-)$1	277	197	216	13.8240
GAUGACGCUAUUUUUGUCC	chr19:11339932-11340203(-)$1	271	248	267	13.2435
ggaggaagaagagCCUCAG	chr22:41650211-41650572(-)$1	361	179	198	13.5569

#DB
(((((........))))).	chrX:53563473-53563728(-)$1	1	83	102	13.1803
(((((........))))))	chr2:71360974-71361248(+)$1	1	29	48	14.1389
(((((........))).))	chr17:76117561-76117805(-)$1	1	151	170	13.1962
(((((........)).)))	chr21:47613507-47613726(-)$1	1	22	41	13.0133
(((.(........).))))	chr7:43540205-43540415(+)$1	1	78	97	13.9902
(((((........))))))	chr1:27105556-27105824(+)$1	1	21	40	14.1665
.((((........))))))	chr18:55282771-55283003(-)$1	1	173	192	13.9721
(((((........))))))	chr20:39721066-39721310(+)$1	1	172	191	13.2435
(..((........))..))	chr4:73968001-73968278(-)$1	1	154	173	13.0345
.((((........))))..	chr1:150528500-150528744(+)$1	1	97	116	13.5880
..(((........)))..)	chr5:145883286-145883535(+)$1	1	137	156	13.9270
(..((........))...)	chr14:65237507-65237785(-)$1	1	143	162	13.0573
(((((........))))))	chr4:69202671-69203023(-)$1	1	258	277	14.2401
(((((........))))))	chr17:80218661-80218945(-)$1	1	186	205	12.4951
.((((........))))..	chr3:37368311-37368562(+)$1	1	33	52	13.9978
(((((........))))))	chr1:94341960-94342217(-)$1	1	132	151	14.1665
.((((........))))))	chr9:100777600-100777819(+)$1	1	127	146	13.8474
(.(((........))).))	chr22:50297245-50297529(-)$1	1	264	283	14.3571
(((((........))))))	chr5:71491259-71491569(+)$1	1	213	232	14.1665
(((((........))))).	chr1:235377157-235377416(-)$1	1	192	211	13.1527
(((.(........))))).	chr17:38244367-38244603(+)$1	1	200	219	12.8734
(((((........)).)))	chr16:89367073-89367337(-)$1	1	240	259	13.3919
.((((........))))))	chr9:100777545-100777747(+)$1	1	182	201	13.8474
(((((........))))))	chr1:90493079-90493349(+)$1	1	211	230	12.4951
(((((........)))))(	chr18:55282834-55283054(-)$1	1	3	22	12.9496
.((.(........).))..	chr1:109241858-109242095(+)$1	1	167	186	12.6313
(.(((........))))))	chr17:40371745-40371993(-)$1	1	197	216	14.2670
(((((........))))))	chr16:4721228-4721519(+)$1	1	36	55	14.2401
(((((........))))).	chr10:71151931-71152164(+)$1	1	109	128	13.1527
(..((........))..))	chr6:44218154-44218386(+)$1	1	103	122	13.1452
(((((........))))).	chr6:44218186-44218427(+)$1	1	215	234	13.1527
..(((........)))(((	chr20:35236175-35236421(+)$1	1	81	100	11.8768
(((((........))))).	chr2:99977989-99978356(+)$1	1	291	310	13.1527
(.(((........))).).	chr4:140291409-140291651(+)$1	1	3	22	13.4594
...((........))))))	chr2:190340034-190340290(+)$1	1	107	126	13.2364
(((((........))))))	chr17:34151029-34151304(+)$1	1	179	198	14.1665
(((.(........).)))(	chr9:99699330-99699572(-)$1	1	38	57	13.1675
.((((........))))))	chr19:10488907-10489149(-)$1	1	76	95	13.5601
(((((........))))))	chr11:129992096-129992363(+)$1	1	12	31	14.1389
(((((........))))))	chr17:38296684-38296934(+)$1	1	103	122	13.2435
(((((........)))).)	chr13:98666203-98666440(+)$1	1	80	99	13.8297
(((((........))))))	chr19:10478991-10479329(-)$1	1	18	37	12.4951
(.(((........))))))	chr21:40883510-40883764(+)$1	1	172	191	14.0642
.(..(........)..)..	chr1:235377097-235377346(-)$1	1	94	113	13.2196
.((((........))))))	chr18:55282803-55283034(-)$1	1	204	223	13.6516
(((((........))))))	chr1:16891198-16891504(-)$1	1	215	234	13.9717
(((((........))))))	chr21:47612478-47612718(-)$1	1	214	233	13.2435
(((((........))))))	chr21:47612594-47612833(-)$1	1	97	116	13.2435
).(((........)))(((	chrX:135593971-135594255(+)$1	1	187	206	13.2318
(.(((........))).))	chr6:26156969-26157220(+)$1	1	226	245	14.3571
(((((........))))))	chr1:26139047-26139290(+)$1	1	75	94	13.2435
.((((........)))).(	chr9:80646048-80646334(-)$1	1	41	60	11.7699
((..(........)..)))	chr3:121416149-121416396(-)$1	1	203	222	13.5705
(((((........))))).	chr3:25654063-25654295(-)$1	1	147	166	13.1803
(((((........)).)))	chr21:47613498-47613706(-)$1	1	2	21	13.3821
(((((........))))))	chr7:128497131-128497379(+)$1	1	183	202	13.2435
.((((........)))).)	chr21:46951351-46951628(-)$1	1	197	216	13.8240
(((((........))))))	chr19:11339932-11340203(-)$1	1	248	267	13.2435
.((((........))))..	chr22:41650211-41650572(-)$1	1	179	198	13.5569

#PSSM
e : 0.23	f : 0.15	[ : 0.10	c : 0.10	g : 0.06	! : 0.05	h : 0.05	" : 0.05	i : 0.03	b : 0.03	= : 0.03	: : 0.03	d : 0.01	# : 0.01	a : 0.01	
d : 0.20	e : 0.18	f : 0.13	[ : 0.08	g : 0.06	! : 0.06	h : 0.05	i : 0.03	b : 0.03	= : 0.03	c : 0.03	: : 0.03	" : 0.01	a : 0.01	
d : 0.20	c : 0.18	e : 0.16	f : 0.13	! : 0.08	g : 0.06	h : 0.05	i : 0.03	= : 0.03	b : 0.01	" : 0.01	
d : 0.18	c : 0.15	e : 0.13	b : 0.11	f : 0.11	[ : 0.06	g : 0.06	h : 0.05	i : 0.03	= : 0.03	! : 0.03	
d : 0.18	c : 0.15	e : 0.13	b : 0.11	f : 0.11	a : 0.10	g : 0.06	h : 0.05	i : 0.03	= : 0.03	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.18	c : 0.15	e : 0.13	b : 0.11	f : 0.11	a : 0.10	g : 0.06	h : 0.05	i : 0.03	= : 0.03	
d : 0.20	c : 0.15	e : 0.13	b : 0.11	f : 0.11	g : 0.06	] : 0.05	h : 0.05	i : 0.03	= : 0.03	2 : 0.03	
d : 0.20	e : 0.16	c : 0.16	f : 0.11	g : 0.06	2 : 0.06	] : 0.05	h : 0.05	i : 0.03	= : 0.03	3 : 0.01	b : 0.01	
e : 0.22	d : 0.22	f : 0.15	g : 0.08	] : 0.06	2 : 0.05	h : 0.05	i : 0.03	= : 0.03	c : 0.03	3 : 0.01	b : 0.01	a : 0.01	
e : 0.23	f : 0.15	c : 0.13	g : 0.08	2 : 0.06	h : 0.06	d : 0.05	i : 0.03	3 : 0.03	= : 0.03	] : 0.03	b : 0.01	4 : 0.01	a : 0.01	: : 0.01	
c : 0.16	f : 0.15	e : 0.10	: : 0.10	g : 0.08	d : 0.06	h : 0.06	2 : 0.05	5 : 0.03	i : 0.03	b : 0.03	= : 0.03	3 : 0.01	D : 0.01	4 : 0.01	B : 0.01	

#score	793.403811979791
#seq	59
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_CDS_m2_run2.txt

#BEAR
:dddd!!dddd[cccooooooccc]dddd22dd	chr2:201822017-201822312(-)$1	295	237	270	13.3695
d[eeeeea"""ddddoooooodddd333a]eee	chr7:44524508-44524836(-)$1	328	81	114	16.2526
eeeee[a!!ffffffooooooffffff22a]ee	chr19:56185201-56185471(+)$1	270	173	206	13.6921
eeee[==========oooooo==========66	chr19:7703835-7704087(+)$1	252	41	74	16.0291
iiiiiidddd!!cccooooooccc333dddd::	chr17:47119563-47119817(+)$1	254	85	118	14.4262
!dddd!!dddd[cccooooooccc]dddd333d	chr13:98652692-98652984(+)$1	292	134	167	14.9807
dddd!!ffffff[bboooooobbffffff333d	chr2:242192279-242192552(-)$1	273	33	66	13.1888
c"""dddd[a[ddddoooooodddd]a22dddd	chr11:62489247-62489505(-)$1	258	188	221	14.5925
b[iiiiiiiii[cccooooooccc333iiiiii	chr3:9406621-9406958(+)$1	337	265	298	18.2961
::eeeee"""eeeeeooooooeeeee4444eee	chr19:34887106-34887329(+)$1	223	41	74	12.9971
c[a####ccc[ddddoooooodddd22ccc333	chr12:2908230-2908455(+)$1	225	142	175	16.0222
ee####ccc"""cccooooooccc]ccc4444e	chr15:66793614-66793827(-)$1	213	12	45	16.8943
iiiiiiiii"""cccooooooccc4444iiiii	chr8:42178173-42178471(+)$1	298	222	255	18.3593
=ccceeeee[ccc[aooooooa]ccc]eeeee]	chr1:59160698-59160981(-)$1	283	192	225	14.9804
bb[ggggggg[bb[aooooooabb]ggggggg3	chr1:1586766-1587039(-)$1	273	223	256	15.2320
:iiiiiiiii"""ccclllccc4444iiiiiii	chrX:53432455-53432697(-)$1	242	144	177	11.8799
ggeeeee[ccc[cccooooooccc22ccc]eee	chr22:50876528-50876826(+)$1	298	182	215	15.9058
d[dddd"""ffffffooooooffffff]dddd]	chr17:42289150-42289374(-)$1	224	184	217	13.5966
3iiiiiiiii::cccooooooccc=========	chr3:47734630-47734873(-)$1	243	89	122	15.7238
"""dddd####ddddoooooodddd4444dddd	chr4:144469025-144469320(+)$1	295	147	180	15.4964
ccc"""ggggggg[aooooooa]gggggggccc	chr10:5950787-5951061(+)$1	274	202	235	15.7205
=========!!arrrrrrrrra22=========	chr1:25554539-25554771(-)$1	232	34	67	12.8114
b!!ggggggg[ddddoooooodddd]ggggggg	chr10:91497092-91497380(+)$1	288	244	277	16.1155
======"""ccc[bboooooobb]ccc======	chr8:141762176-141762485(-)$1	309	138	171	16.2379
:ggggggg"""ddddoooooodddd666666gg	chr20:47682832-47683082(+)$1	250	212	245	13.1957
cc=============nnnnn=============	chr17:1265196-1265402(-)$1	206	70	103	13.4793
bb"""ffffff[cccooooooccc]ffffff33	chr11:65835316-65835597(+)$1	281	111	144	15.1569
!!ccc$$$$$eeeeeooooooeeeeeccc22bb	chr16:89977491-89977815(+)$1	324	185	218	12.9834
iiii[ccc!!cccrrrrrrrrrccc22ccc]ii	chr16:89348161-89348387(-)$1	226	163	196	12.1445
$$$$$==========oooooo==========33	chr15:49033757-49034001(-)$1	244	147	180	16.8343
:eeeee[bb!!ddddoooooodddd22bb]eee	chr17:40152428-40152690(-)$1	262	226	259	13.4605
:ccc[ccc[ffffffooooooffffff]ccccc	chr12:133256451-133256698(-)$1	247	67	100	13.2452
[ccc[gggggggcccooooooccc]ggggggg]	chr17:8438605-8438830(-)$1	225	114	147	16.7176
iiiiiii$$$$$cccooooooccc4444iiiii	chr15:59185115-59185360(-)$1	245	90	123	17.4141
ddddd"""ccc!!bboooooobbccc]dddd]d	chrX:153196112-153196405(-)$1	293	141	174	13.8228
!!bb[eeeee!!cccooooooccc22eeeee33	chr7:1477121-1477345(-)$1	224	105	138	15.4256
e"""dddd!!bbcccooooooccc]bb22dddd	chr19:5598702-5598948(-)$1	246	135	168	14.4301
fggggggg####cccrrrrrrrrrccc333ggg	chr7:128493680-128493916(+)$1	236	51	84	12.3407
d[ccc[==========nnnnn==========]c	chr2:242192727-242192953(-)$1	226	22	55	12.8105
:==============mmmm==============	chr4:100869862-100870093(-)$1	231	146	179	12.3268
==========[a!!aooooooa22a]=======	chr19:55645416-55645624(-)$1	208	17	50	17.2912
d[eeeeea"""ddddoooooodddd333a]eee	chr7:44524636-44524977(-)$1	341	222	255	16.2526
::eeeee[a[a[cccooooooccc]a]aeeeee	chr7:135661671-135661918(-)$1	247	109	142	14.4410
ccdddd!!ffffffaooooooa]ffffff4444	chr5:71492200-71492456(+)$1	256	148	181	14.0712
bb[eeeee####cccooooooccc333eeeee]	chr3:100096560-100096857(-)$1	297	200	233	16.5760
ddaffffff!!ddddoooooodddd4444ffff	chr4:59300-59527(+)$1	227	87	120	14.3699
fff[ccc[accccccooooooccc]ccc4444a	chr22:36744947-36745198(-)$1	251	9	42	15.8567
========ddddcccooooooccc]dddd::FF	chr1:182835508-182835747(+)$1	239	120	153	12.8293
####bb!!gggggggooooooggggggg22bb3	chr9:100777597-100777802(+)$1	205	23	56	14.7468
ii[ffffff[cccbboooooobb333ccc333f	chr6:43592306-43592564(-)$1	258	154	187	15.1950
dgggggggccc[ccclllccc]ccc22gggggg	chr10:99123510-99123763(-)$1	253	84	117	11.4297
c"""gggggggddddoooooodddd]ggggggg	chr7:12414531-12414756(-)$1	225	17	50	16.0691
c####bb[gggggggooooooggggggg]bbcc	chr5:133496715-133496921(-)$1	206	64	97	14.5372
ggggg[ccc[eeeeeooooooeeeee22cccgg	chr17:45297267-45297510(+)$1	243	162	195	14.3744
!ggggggg!!ccc[aooooooaccc22gggggg	chr6:158288510-158288764(+)$1	254	69	102	17.0075
a!!bb[ggggggg[aooooooa]gggggggbb2	chr14:102550988-102551196(-)$1	208	157	190	14.9557
iiiiii$$$$$ddddooooooddddiiiiiiii	chr17:45299659-45299909(+)$1	250	117	150	15.7929

#otherMatches

#Seq PSSM
UGCUUUAUAGGAUACACAAAAGUAGUCUGGUAG	chr2:201822017-201822312(-)$1	295	237	270	13.3695
GCCAGUCCCAGUUCCAGUCCAGGAAAUAGAGAU	chr7:44524508-44524836(-)$1	328	81	114	16.2526
AGAGUGGUUGUCACAAAAUACUGUGACCCCGAC	chr19:56185201-56185471(+)$1	270	173	206	13.6921
CCAUCCAUCUGUCCAUCCAUCUGGACAGGUGCU	chr19:7703835-7704087(+)$1	252	41	74	16.0291
GAAGGGGGCCAUCGAGAAUUGUUGCAGGGCCGA	chr17:47119563-47119817(+)$1	254	85	118	14.4262
AUGGCUUGCGGACUUGGUGGAAAGCUCGUUCUG	chr13:98652692-98652984(+)$1	292	134	167	14.9807
CUGGGUUUUGGUUCAGCUCAUUGGCCAAGUAAC	chr2:242192279-242192552(-)$1	273	33	66	13.1888
CUGAGACUGUGCUCAAUCAAAUGAGGGUAAGUU	chr11:62489247-62489505(-)$1	258	188	221	14.5925
UACUGGCUUUGAGCAAACAGCUGCAGAUGAAGU	chr3:9406621-9406958(+)$1	337	265	298	18.2961
cuuucuuuUUAAAUGUUCUUUCAUUUUGCCAAG	chr19:34887106-34887329(+)$1	223	41	74	12.9971
GAGAAAGGAGAACAUUCCAUCGUGUACCUCAAG	chr12:2908230-2908455(+)$1	225	142	175	16.0222
GGCAAAGGCAAAAUGAGAAACCGUCGCCGUAUC	chr15:66793614-66793827(-)$1	213	12	45	16.8943
GCACACACAGACAGCCCUGGAGCUUCGGUGUGU	chr8:42178173-42178471(+)$1	298	222	255	18.3593
AUAAAAAUAUCAGGUGCAUUAAGCUGUUAUUUA	chr1:59160698-59160981(-)$1	283	192	225	14.9804
GGAUGUACAGAUGUGCAAGACCCAGCUGUACAC	chr1:1586766-1587039(-)$1	273	223	256	15.2320
AUUGAUGUGAUUCGCUAUGAGCCACCUCAUAUC	chrX:53432455-53432697(-)$1	242	144	177	11.8799
GUGAUGGCCAGACCCAGGUGCGGGGCCUGCCCA	chr22:50876528-50876826(+)$1	298	182	215	15.9058
CUGGGCUCUGCAGGUGAGAAGGCCUGCUGCCCU	chr17:42289150-42289374(-)$1	224	184	217	13.5966
UAAAGAAAGAUAGUGAAAAUACACCUGUUAAAG	chr3:47734630-47734873(-)$1	243	89	122	15.7238
GAUUUGUAUGCUUCACAAACUUGGAUUUGACAA	chr4:144469025-144469320(+)$1	295	147	180	15.4964
UCAGACCUGUGUGUGCUGAACCUCAUACGGUGA	chr10:5950787-5951061(+)$1	274	202	235	15.7205
CUUCUUUUUAGGAAUGUGCGGCAAGAGGAGAAG	chr1:25554539-25554771(-)$1	232	34	67	12.8114
UCAUUUUCAGCAGGAACUUUCUCUUUCUGAAAA	chr10:91497092-91497380(+)$1	288	244	277	16.1155
AUUUCUUCAAGAAGCCUGUAAGUGUCUAGAAAU	chr8:141762176-141762485(-)$1	309	138	171	16.2379
AAGGUAUUGAUGCAUAGAUUCAUGUUUUUAAAA	chr20:47682832-47683082(+)$1	250	212	245	13.1957
CUGauuuaaaaaaaauuuuuuuuuuuuuaGGUU	chr17:1265196-1265402(-)$1	206	70	103	13.4793
CUCAGCUCUUCACUGUGUUGCCAGAGAAGAGAA	chr11:65835316-65835597(+)$1	281	111	144	15.1569
GAUGAUGUUCCCGAUUUCUCUGUUGGUCGGAGU	chr16:89977491-89977815(+)$1	324	185	218	12.9834
GGCGACCUGAUGAUGACCAGCUUCGAGAGGAUG	chr16:89348161-89348387(-)$1	226	163	196	12.1445
CAAAAUUACUGGAAACACCUAUUUCUAGUAAGU	chr15:49033757-49034001(-)$1	244	147	180	16.8343
UACUUGCCAAAUAUUAUUAAAAGUAGCUGCCAA	chr17:40152428-40152690(-)$1	262	226	259	13.4605
GUUGUGAGCGAGAAGUUUCAUCUUUUCUCUCCA	chr12:133256451-133256698(-)$1	247	67	100	13.2452
UUUGGAAAGAUGGUAAGAAAGUGCUUAUCUUUG	chr17:8438605-8438830(-)$1	225	114	147	16.7176
UUUUUCUACAGAUUCAUGGAAGAAGUAAGGAAA	chr15:59185115-59185360(-)$1	245	90	123	17.4141
GGAGGACGCCUAUGCCAUGAAGCGGGACCUCAC	chrX:153196112-153196405(-)$1	293	141	174	13.8228
AAGGCCCAGCGUCUGGAGGAGCAGCAGCUGGAC	chr7:1477121-1477345(-)$1	224	105	138	15.4256
CAAAGAGAGAGUGAGUAUUGCCUCUGCCAUCUC	chr19:5598702-5598948(-)$1	246	135	168	14.4301
UCUGAGGUUCCUGACCCACCCUUUGUCCCCACU	chr7:128493680-128493916(+)$1	236	51	84	12.3407
UUUGGUUUUGGUGUGGUAGGUUCACAUCGAGUU	chr2:242192727-242192953(-)$1	226	22	55	12.8105
UUAAAAAAUUUCUUCAGAGGAAGGAAUUUUUUG	chr4:100869862-100870093(-)$1	231	146	179	12.3268
ucugggcccaaguuccucuccguCCCUGGGCCU	chr19:55645416-55645624(-)$1	208	17	50	17.2912
GCCAGUCCCAGUUCCAGUCCAGGAAAUAGAGAU	chr7:44524636-44524977(-)$1	341	222	255	16.2526
GACUUGGAUGAGGUGAAAGACUAUGUGGCCAAG	chr7:135661671-135661918(-)$1	247	109	142	14.4410
GUGGUGCCGAGGAGCAGUAUGGAUUCCUCACCA	chr5:71492200-71492456(+)$1	256	148	181	14.0712
GGCAGAAGCAUUGCUACUACGAGCUACCUUCUA	chr3:100096560-100096857(-)$1	297	200	233	16.5760
UGCCCAGCAGAAUUUGUAUAGAGAUGUGAUGUU	chr4:59300-59527(+)$1	227	87	120	14.3699
GGUAUGGGUGCCUUCCGACAAGAGUGGCUUUGA	chr22:36744947-36745198(-)$1	251	9	42	15.8567
AGGAGAAGAGCCUGGAAAAAGCUGUGGCUACAG	chr1:182835508-182835747(+)$1	239	120	153	12.8293
AAAGUCAAUUUUUGUUACUGUACagaggaggaa	chr9:100777597-100777802(+)$1	205	23	56	14.7468
AUCGUGGUCAGCAAGAUCGACCUAUGUGCCAAG	chr6:43592306-43592564(-)$1	258	154	187	15.1950
CUCUCUUUUUUGGCUCCAGGCGAAGAUGAAGAG	chr10:99123510-99123763(-)$1	253	84	117	11.4297
UCACAGAUUUUUCUCGAGAUGGAGAUAGAGUCU	chr7:12414531-12414756(-)$1	225	17	50	16.0691
AAAGUGCCACAGAGGAAUGAACUUUUGUUGUUG	chr5:133496715-133496921(-)$1	206	64	97	14.5372
CUGCAUGGCAGACCUCUCCCAGGGUCAGGCUUG	chr17:45297267-45297510(+)$1	243	162	195	14.3744
CUCGGGUUAUGUAUGAUUUUGCUGCUGAACCUG	chr6:158288510-158288764(+)$1	254	69	102	17.0075
GGAAGAUCACUUGGCAGUGAAGGUGAGUGACUG	chr14:102550988-102551196(-)$1	208	157	190	14.9557
GCUGUUAGCUGGGCAAGAGGAUGCCAAUGGCUG	chr17:45299659-45299909(+)$1	250	117	150	15.7929

#DB
.((((..((((.(((......))).))))..))	chr2:201822017-201822312(-)$1	1	237	270	13.3695
(.((((((...((((......))))...).)))	chr7:44524508-44524836(-)$1	1	81	114	16.2526
(((((.(..((((((......))))))..).))	chr19:56185201-56185471(+)$1	1	173	206	13.6921
((((.((((((((((......))))))))))..	chr19:7703835-7704087(+)$1	1	41	74	16.0291
))))))((((..(((......)))...))))..	chr17:47119563-47119817(+)$1	1	85	118	14.4262
.((((..((((.(((......))).))))...)	chr13:98652692-98652984(+)$1	1	134	167	14.9807
((((..((((((.((......))))))))...)	chr2:242192279-242192552(-)$1	1	33	66	13.1888
(...((((.(.((((......)))).)..))))	chr11:62489247-62489505(-)$1	1	188	221	14.5925
(.(((((((((.(((......)))...))))))	chr3:9406621-9406958(+)$1	1	265	298	18.2961
..(((((...(((((......)))))....)))	chr19:34887106-34887329(+)$1	1	41	74	12.9971
(.(....(((.((((......))))..)))...	chr12:2908230-2908455(+)$1	1	142	175	16.0222
((....(((...(((......))).)))....)	chr15:66793614-66793827(-)$1	1	12	45	16.8943
(((((((((...(((......)))....)))))	chr8:42178173-42178471(+)$1	1	222	255	18.3593
(((((((((.(((.(......).))).))))).	chr1:59160698-59160981(-)$1	1	192	225	14.9804
((.(((((((.((.(......))).))))))).	chr1:1586766-1587039(-)$1	1	223	256	15.2320
.(((((((((...(((...)))....)))))))	chrX:53432455-53432697(-)$1	1	144	177	11.8799
))(((((.(((.(((......)))..))).)))	chr22:50876528-50876826(+)$1	1	182	215	15.9058
(.((((...((((((......)))))).)))).	chr17:42289150-42289374(-)$1	1	184	217	13.5966
.)))))))))..(((......)))(((((((((	chr3:47734630-47734873(-)$1	1	89	122	15.7238
...((((....((((......))))....))))	chr4:144469025-144469320(+)$1	1	147	180	15.4964
(((...(((((((.(......).))))))))))	chr10:5950787-5951061(+)$1	1	202	235	15.7205
(((((((((..(.........)..)))))))))	chr1:25554539-25554771(-)$1	1	34	67	12.8114
(..(((((((.((((......)))).)))))))	chr10:91497092-91497380(+)$1	1	244	277	16.1155
((((((...(((.((......)).)))))))))	chr8:141762176-141762485(-)$1	1	138	171	16.2379
.(((((((...((((......))))......))	chr20:47682832-47683082(+)$1	1	212	245	13.1957
(((((((((((((((.....)))))))))))))	chr17:1265196-1265402(-)$1	1	70	103	13.4793
((...((((((.(((......))).))))))..	chr11:65835316-65835597(+)$1	1	111	144	15.1569
..(((.....(((((......))))))))..))	chr16:89977491-89977815(+)$1	1	185	218	12.9834
((((.(((..(((.........)))..))).))	chr16:89348161-89348387(-)$1	1	163	196	12.1445
.....((((((((((......))))))))))..	chr15:49033757-49034001(-)$1	1	147	180	16.8343
.(((((.((..((((......))))..)).)))	chr17:40152428-40152690(-)$1	1	226	259	13.4605
.(((.(((.((((((......)))))).)))))	chr12:133256451-133256698(-)$1	1	67	100	13.2452
.(((.((((((((((......))).))))))).	chr17:8438605-8438830(-)$1	1	114	147	16.7176
(((((((.....(((......)))....)))))	chr15:59185115-59185360(-)$1	1	90	123	17.4141
(((((...(((..((......))))).)))).)	chrX:153196112-153196405(-)$1	1	141	174	13.8228
..((.(((((..(((......)))..)))))..	chr7:1477121-1477345(-)$1	1	105	138	15.4256
(...((((..(((((......))).))..))))	chr19:5598702-5598948(-)$1	1	135	168	14.4301
((((((((....(((.........)))...)))	chr7:128493680-128493916(+)$1	1	51	84	12.3407
(.(((.((((((((((.....)))))))))).)	chr2:242192727-242192953(-)$1	1	22	55	12.8105
.((((((((((((((....))))))))))))))	chr4:100869862-100870093(-)$1	1	146	179	12.3268
((((((((((.(..(......)..).)))))))	chr19:55645416-55645624(-)$1	1	17	50	17.2912
(.((((((...((((......))))...).)))	chr7:44524636-44524977(-)$1	1	222	255	16.2526
..(((((.(.(.(((......))).).))))))	chr7:135661671-135661918(-)$1	1	109	142	14.4410
((((((..(((((((......).))))))....	chr5:71492200-71492456(+)$1	1	148	181	14.0712
((.(((((....(((......)))...))))).	chr3:100096560-100096857(-)$1	1	200	233	16.5760
(((((((((..((((......))))....))))	chr4:59300-59527(+)$1	1	87	120	14.3699
(((.(((.(((((((......))).)))....)	chr22:36744947-36745198(-)$1	1	9	42	15.8567
))))))))(((((((......))).))))..))	chr1:182835508-182835747(+)$1	1	120	153	12.8293
....((..(((((((......)))))))..)).	chr9:100777597-100777802(+)$1	1	23	56	14.7468
((.((((((.(((((......))...)))...)	chr6:43592306-43592564(-)$1	1	154	187	15.1950
(((((((((((.(((...))).)))..))))))	chr10:99123510-99123763(-)$1	1	84	117	11.4297
(...(((((((((((......)))).)))))))	chr7:12414531-12414756(-)$1	1	17	50	16.0691
(....((.(((((((......))))))).))))	chr5:133496715-133496921(-)$1	1	64	97	14.5372
(((((.(((.(((((......)))))..)))))	chr17:45297267-45297510(+)$1	1	162	195	14.3744
.(((((((..(((.(......))))..))))))	chr6:158288510-158288764(+)$1	1	69	102	17.0075
(..((.(((((((.(......).))))))))).	chr14:102550988-102551196(-)$1	1	157	190	14.9557
((((((.....((((......))))))))))))	chr17:45299659-45299909(+)$1	1	117	150	15.7929

#PSSM
: : 0.14	d : 0.14	c : 0.12	i : 0.10	b : 0.08	= : 0.08	e : 0.07	! : 0.07	g : 0.03	f : 0.03	3 : 0.01	" : 0.01	$ : 0.01	[ : 0.01	# : 0.01	a : 0.01	
i : 0.14	[ : 0.10	c : 0.10	g : 0.10	d : 0.08	= : 0.08	e : 0.07	" : 0.07	! : 0.07	b : 0.05	: : 0.03	# : 0.03	$ : 0.01	f : 0.01	
e : 0.14	i : 0.14	d : 0.10	c : 0.10	= : 0.10	" : 0.08	g : 0.08	# : 0.05	[ : 0.05	a : 0.03	! : 0.03	$ : 0.01	b : 0.01	f : 0.01	
e : 0.15	i : 0.14	d : 0.12	g : 0.12	= : 0.10	" : 0.08	c : 0.08	# : 0.07	b : 0.03	f : 0.03	$ : 0.01	[ : 0.01	
e : 0.15	d : 0.14	g : 0.14	i : 0.12	= : 0.10	[ : 0.08	# : 0.05	c : 0.05	" : 0.03	f : 0.03	b : 0.03	! : 0.01	$ : 0.01	
e : 0.15	= : 0.14	g : 0.14	i : 0.12	d : 0.08	[ : 0.07	! : 0.05	f : 0.05	c : 0.05	# : 0.03	" : 0.03	b : 0.03	$ : 0.01	
g : 0.17	e : 0.14	= : 0.14	i : 0.08	c : 0.08	! : 0.07	d : 0.07	f : 0.07	" : 0.05	$ : 0.03	a : 0.01	# : 0.01	[ : 0.01	b : 0.01	
g : 0.17	= : 0.14	d : 0.08	c : 0.08	f : 0.07	i : 0.07	" : 0.07	[ : 0.07	! : 0.05	e : 0.05	$ : 0.05	a : 0.03	# : 0.01	b : 0.01	
g : 0.14	= : 0.12	" : 0.10	c : 0.10	f : 0.08	d : 0.07	! : 0.07	i : 0.07	# : 0.05	$ : 0.05	[ : 0.03	e : 0.03	a : 0.03	b : 0.01	
g : 0.14	" : 0.10	f : 0.10	= : 0.10	c : 0.10	! : 0.10	d : 0.07	[ : 0.07	i : 0.05	# : 0.05	$ : 0.05	a : 0.01	e : 0.01	
c : 0.15	" : 0.10	f : 0.10	g : 0.10	= : 0.08	! : 0.08	[ : 0.08	d : 0.05	e : 0.05	# : 0.05	$ : 0.03	i : 0.01	: : 0.01	b : 0.01	a : 0.01	
d : 0.21	[ : 0.12	c : 0.10	f : 0.08	= : 0.08	g : 0.08	! : 0.05	e : 0.05	" : 0.05	b : 0.03	a : 0.03	# : 0.03	: : 0.01	$ : 0.01	
c : 0.40	d : 0.19	= : 0.08	f : 0.07	g : 0.07	e : 0.05	[ : 0.03	! : 0.03	b : 0.01	" : 0.01	r : 0.01	
c : 0.35	d : 0.19	= : 0.08	[ : 0.08	f : 0.07	b : 0.07	e : 0.05	r : 0.03	g : 0.03	! : 0.01	
c : 0.35	d : 0.19	a : 0.12	= : 0.08	b : 0.07	f : 0.05	e : 0.05	r : 0.03	g : 0.03	
o : 0.85	r : 0.05	c : 0.01	n : 0.01	= : 0.01	m : 0.01	l : 0.01	
o : 0.85	r : 0.05	l : 0.03	n : 0.03	m : 0.01	
o : 0.85	r : 0.05	l : 0.03	n : 0.03	m : 0.01	
o : 0.85	r : 0.05	n : 0.03	l : 0.01	m : 0.01	c : 0.01	
o : 0.85	r : 0.05	c : 0.03	n : 0.03	= : 0.01	
o : 0.85	r : 0.05	c : 0.03	= : 0.03	n : 0.01	
c : 0.31	d : 0.19	a : 0.14	= : 0.08	b : 0.07	f : 0.05	e : 0.05	r : 0.03	g : 0.03	] : 0.01	
c : 0.35	d : 0.19	= : 0.08	b : 0.08	] : 0.07	f : 0.05	e : 0.05	2 : 0.03	g : 0.03	4 : 0.01	r : 0.01	
c : 0.38	d : 0.19	f : 0.08	= : 0.08	g : 0.07	e : 0.05	2 : 0.03	b : 0.01	4 : 0.01	] : 0.01	r : 0.01	3 : 0.01	
d : 0.19	] : 0.17	= : 0.12	c : 0.12	f : 0.08	3 : 0.07	g : 0.07	e : 0.05	4 : 0.05	2 : 0.03	a : 0.01	
= : 0.12	2 : 0.12	3 : 0.10	f : 0.10	c : 0.10	g : 0.10	4 : 0.08	] : 0.07	d : 0.05	e : 0.05	6 : 0.01	b : 0.01	a : 0.01	i : 0.01	
= : 0.14	g : 0.14	c : 0.12	f : 0.10	2 : 0.10	3 : 0.08	4 : 0.08	d : 0.05	] : 0.05	i : 0.03	a : 0.01	6 : 0.01	e : 0.01	b : 0.01	
g : 0.17	= : 0.15	c : 0.12	d : 0.08	4 : 0.08	2 : 0.07	3 : 0.05	f : 0.05	i : 0.05	e : 0.05	] : 0.03	6 : 0.01	b : 0.01	a : 0.01	
= : 0.15	g : 0.14	c : 0.12	d : 0.10	i : 0.08	4 : 0.08	2 : 0.07	e : 0.07	f : 0.05	a : 0.03	6 : 0.01	b : 0.01	3 : 0.01	] : 0.01	
= : 0.15	g : 0.14	d : 0.10	i : 0.08	] : 0.07	3 : 0.07	4 : 0.07	c : 0.07	e : 0.07	2 : 0.05	f : 0.03	a : 0.01	6 : 0.01	: : 0.01	b : 0.01	
e : 0.15	= : 0.15	g : 0.12	d : 0.10	i : 0.08	3 : 0.07	4 : 0.05	c : 0.05	b : 0.05	2 : 0.03	] : 0.03	f : 0.03	6 : 0.01	: : 0.01	
e : 0.15	g : 0.15	3 : 0.12	i : 0.10	= : 0.10	d : 0.08	4 : 0.05	c : 0.05	b : 0.05	] : 0.03	6 : 0.01	: : 0.01	f : 0.01	F : 0.01	
e : 0.14	d : 0.12	g : 0.12	i : 0.10	3 : 0.10	= : 0.10	] : 0.07	c : 0.07	f : 0.03	6 : 0.01	: : 0.01	b : 0.01	4 : 0.01	a : 0.01	F : 0.01	2 : 0.01	

#score	844.387633565974
#seq	57
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_UTR_m2_run1.txt

#BEAR
fffff[bb[cccnnnnnccc]bbfffff	chr11:95522561-95522845(-)$1	284	111	139	11.4759
dd[a[a[bb[annnnna]bb]a]a]ddd	chr4:2935992-2936267(-)$1	275	182	210	10.4175
c[eeeeeeeeeennnnneeeee22eeee	chr11:64124699-64124950(+)$1	251	92	120	11.1540
fdddd[ffffffnnnnnffffff333dd	chr3:48664394-48664754(-)$1	360	118	146	10.3289
eeee"""eeeeennnnneeeee4444ee	chr7:100172553-100172756(-)$1	203	166	194	11.5003
[ggggggg!!bbnnnnnbb4444ggggg	chr12:56632326-56632593(-)$1	267	113	141	12.7761
BB==========nnnnn==========F	chr1:150947024-150947320(-)$1	296	17	45	11.1901
[bb####eeeeennnnneeeeebb]ddd	chr3:195635692-195635953(-)$1	261	38	66	10.2254
[a[aiiiiiiiiillliiiiiiiii]a]	chr16:18573219-18573483(-)$1	264	151	179	9.2337
eeee####ddddnnnnndddd]eeeee=	chr14:35761558-35761820(+)$1	262	99	127	11.8467
ccc!!iiiiiiiiillliiiiiiiiicc	chr9:86584580-86584815(-)$1	235	159	187	9.0064
ff[ccc"""cccnnnnnccc333ccc22	chr3:48670963-48671194(-)$1	231	24	52	13.0944
eee[dddd[cccnnnnncccdddd]eee	chr19:15442552-15442791(-)$1	239	134	162	12.5567
ddd[gggggggooooooggggggg]ddd	chr17:56406010-56406220(-)$1	210	28	56	9.7982
bb[dddd[ddddnnnnndddddddd]bb	chr1:36106913-36107193(-)$1	280	158	186	9.5679
eeee[bbddddoooooodddd]bb]eee	chr19:18548006-18548252(-)$1	246	45	73	8.7263
eeee[ccc[cccnnnnnccc]ccc]eee	chr18:9475519-9475795(+)$1	276	132	160	13.7289
=========[cccmmmmccc]=======	chr10:75578192-75578491(-)$1	299	209	237	9.4033
ggggg[bb[cccnnnnncccbbgggggg	chr14:57734898-57735166(-)$1	268	121	149	11.9501
bb[ggggggg[annnnna]ggggggg]b	chr12:7024392-7024702(+)$1	310	280	308	11.8391
"eeeee!!ddddoooooodddd]eeeee	chr18:48556601-48556889(+)$1	288	210	238	9.8332
c"""ffffff[annnnna]ffffff22c	chr20:62272050-62272329(-)$1	279	133	161	10.2838
[a[eeeee[a[aooooooa]aeeeee]a	chr9:35072427-35072689(-)$1	262	82	110	10.1873
iiiiiiiii[ccclllccciiiiiiiii	chr19:1881983-1882203(-)$1	220	186	214	9.5027
e[ffffffddddoooooodddd333fff	chr2:242255515-242255802(+)$1	287	11	39	8.4273
feeeee"""cccnnnnnccc22eeeee:	chr17:76182929-76183198(-)$1	269	35	63	12.6066
ddeeeee[a[bboooooobb]a]eeeee	chr7:54826749-54827006(-)$1	257	171	199	10.4364
[bbeeeee[cccnnnnnccc]eeeee22	chr20:3995639-3995926(-)$1	287	181	209	12.3068
eeeee[a"""bbnnnnnbb333a]eeee	chr7:150756621-150756902(+)$1	281	129	157	13.6297
eeeee[a"""bbnnnnnbb333a]eeee	chr7:150756702-150756946(+)$1	244	48	76	13.6297
D::eeeee[cccnnnnnccc333eeeee	chr1:12226992-12227223(+)$1	231	201	229	10.8755
ccc[ccc!!bboooooobb22ccc]ccc	chr9:80646041-80646316(-)$1	275	190	218	9.4082
DDgggggggcccnnnnnccc]ggggggg	chr2:198364907-198365159(+)$1	252	96	124	11.1707
]ffffffeeeeennnnneeeeeiiiiii	chr16:1361820-1362074(+)$1	254	84	112	10.4192
dd[a[gggggggnnnnnggggggga]dd	chr10:75579268-75579558(-)$1	290	16	44	12.1004
d"""bb[a[cccnnnnnccc]a]bb]dd	chr4:152020694-152020933(+)$1	239	19	47	12.1729
d[eeeee!!ccclllccc]eeeee]ddd	chr19:19029988-19030274(-)$1	286	24	52	9.0775
ee[ccc[ddddnnnnndddd]ccc]eee	chr3:47458583-47458839(-)$1	256	146	174	10.1073
eeedddd!!cccnnnnnccc22dddd]e	chr5:175954572-175954827(-)$1	255	109	137	12.5541
[a[ffffff[bbnnnnnbb]ffffffa]	chr16:30935310-30935586(+)$1	276	126	154	10.8164
eeeeebb!!ddddnnnnnddddbb]eee	chr12:56120884-56121223(-)$1	339	3	31	9.9802
ff[bb[bb[cccnnnnnccc]bb]bb]f	chr15:34393760-34394115(-)$1	355	23	51	10.9337
cceeeee[cccooooooccc]eeeee]c	chr19:12912448-12912713(-)$1	265	178	206	10.6262
eeeeegggggggnnnnnggggggg]eee	chr6:167369793-167370048(-)$1	255	95	123	12.8513
======="""bboooooobb333=====	chr9:32572921-32573195(-)$1	274	39	67	11.2196
eeeee[a[a[bbnnnnnbba]a]eeeee	chr11:118965144-118965396(-)$1	252	12	40	13.2349
iiiiiiiii[bbnnnnnbb]iiiiiiii	chr1:27561068-27561388(+)$1	320	196	224	12.3921
d[dddd"""cccoooooocccddddddd	chr2:20549803-20550080(-)$1	277	32	60	9.7093
eee!!eeeee!!annnnna22eeeee22	chr9:139249218-139249502(+)$1	284	173	201	10.2461
:ggggggg[cccnnnnncccggggggg:	chr11:85779680-85780006(-)$1	326	109	137	11.2413
[ffffffccc[annnnna]ccc]fffff	chr11:46403153-46403407(+)$1	254	13	41	11.2181
ccc[agggggggnnnnnggggggg]a]c	chr10:88854837-88855112(+)$1	275	182	210	12.1440
dddd"""eeeeennnnneeeee22dddd	chr16:87738797-87739069(-)$1	272	81	109	10.3625
ddd!!bb####annnnna4444bb22dd	chr2:54197725-54198044(-)$1	319	30	58	11.5393
fff[dddd"""ccclllccc333dddd]	chr20:57582066-57582331(-)$1	265	99	127	8.8576
eeeebb!!ddddooooooddddbb]eee	chr2:27294366-27294597(-)$1	231	92	120	9.0502
fffdddd!!cccooooooccc4444ddd	chr19:50168062-50168371(-)$1	309	237	265	10.1021
!a[dddd[a[bbnnnnnbb22a]dddd]	chr3:184080232-184080540(+)$1	308	142	170	11.7466
bbeeeee"""bbnnnnnbb333eeeee:	chr19:40971417-40971744(-)$1	327	184	212	11.9130

#otherMatches

#Seq PSSM
gagcccgcggcccgggcggcggcggCUC	chr11:95522561-95522845(-)$1	284	111	139	11.4759
CCAGGGGCCGGAAUCGCGGGGCGCgggc	chr4:2935992-2936267(-)$1	275	182	210	10.4175
CUGGAGUUCUGGUUCUUCCAGGUGGCUC	chr11:64124699-64124950(+)$1	251	92	120	11.1540
CACACCUAUGUGACUCCCGCAUGUUUGU	chr3:48664394-48664754(-)$1	360	118	146	10.3289
GCCCCACUCUGGUGCCCCCAGACCCUGG	chr7:100172553-100172756(-)$1	203	166	194	11.5003
UUAGGGGAGGAUGGAGGAUGAAGUCUCC	chr12:56632326-56632593(-)$1	267	113	141	12.7761
GCUCGGGCUCAGCUCGACUGGGCUCGGC	chr1:150947024-150947320(-)$1	296	17	45	11.1901
CCGAGUCCGGGGAAGGCCCCCGCGAGCG	chr3:195635692-195635953(-)$1	261	38	66	10.2254
GGGCCCGCGGUGGUCACCGCCGCGGUGG	chr16:18573219-18573483(-)$1	264	151	179	9.2337
UGUUUAAAGUAGUGCUUCUACCAACAUG	chr14:35761558-35761820(+)$1	262	99	127	11.8467
UGAUUGGUGCUGUAAAAUGCAGCAUUUC	chr9:86584580-86584815(-)$1	235	159	187	9.0064
CCUGGAAAAAUCAGGUAGGUAACUCUCU	chr3:48670963-48671194(-)$1	231	24	52	13.0944
gcccggcccgggUAAGUCCCGGCCUGGC	chr19:15442552-15442791(-)$1	239	134	162	12.5567
gggaggGCUGGCUCUUCCCGGCUCACCC	chr17:56406010-56406220(-)$1	210	28	56	9.7982
CCAUGGAGUACCUCAUCGGUAUCCAAGG	chr1:36106913-36107193(-)$1	280	158	186	9.5679
CUCUGUGGGGCGGGAGGGCUUGCAGGGG	chr19:18548006-18548252(-)$1	246	45	73	8.7263
cugcggcggggcggacggucgcgcggcg	chr18:9475519-9475795(+)$1	276	132	160	13.7289
CAGCCUUUUGCUCCUGUGAGGAAAGGGU	chr10:75578192-75578491(-)$1	299	209	237	9.4033
UCGGGUGUUGGAAGAUGUCUACUCCGGA	chr14:57734898-57735166(-)$1	268	121	149	11.9501
AGAGGCGCGGGAACCACUGUCGUGCCCC	chr12:7024392-7024702(+)$1	310	280	308	11.8391
agcucgaggcgguccggcccgcgcgggc	chr18:48556601-48556889(+)$1	288	210	238	9.8332
UGCAGCCGGUGCUUGUUGAACUGGCAGG	chr20:62272050-62272329(-)$1	279	133	161	10.2838
UCUGCGACCGUCGUUUGAgucgucgcug	chr9:35072427-35072689(-)$1	262	82	110	10.1873
GGUUCCUUCAUCCUGUGGAGAGGGGGCU	chr19:1881983-1882203(-)$1	220	186	214	9.5027
UGGGGGAGGGGCGGCCGAGCCCAGGCUC	chr2:242255515-242255802(+)$1	287	11	39	8.4273
UGGUUUAAAGCGGUCGGCGCGGGAACCA	chr17:76182929-76183198(-)$1	269	35	63	12.6066
CCGGUCGGUACGGGCGAACGGGGCGGCC	chr7:54826749-54827006(-)$1	257	171	199	10.4364
GUCCCCGGGCGUGGGAGGCGGCUGGGAU	chr20:3995639-3995926(-)$1	287	181	209	12.3068
cccggggUGGGCACGGGGCAGUCGUCGG	chr7:150756621-150756902(+)$1	281	129	157	13.6297
cccggggUGGGCACGGGGCAGUCGUCGG	chr7:150756702-150756946(+)$1	244	48	76	13.6297
CUCUGGGCUGCGGCGCACGCCUUGCCCG	chr1:12226992-12227223(+)$1	231	201	229	10.8755
GCUGCCUGAGCGAGGAGGCCAAGGAAGC	chr9:80646041-80646316(-)$1	275	190	218	9.4082
CCCUCCCUCCCUGGGAGGGGCGAGGGGG	chr2:198364907-198365159(+)$1	252	96	124	11.1707
CUGGGCUGCUCCACGUGGGAGUGGAGGG	chr16:1361820-1362074(+)$1	254	84	112	10.4192
CCUGAGGCGAGGCGUCCCCUUGCCCCGG	chr10:75579268-75579558(-)$1	290	16	44	12.1004
CAAAGGUCACGUAGACGGCGCGCCCCGC	chr4:152020694-152020933(+)$1	239	19	47	12.1729
UCGGAAAAAGUAAACUACAUUUCCUAGC	chr19:19029988-19030274(-)$1	286	24	52	9.0775
GGGACGCCAUUGAAGGGGUGCUGUGCUG	chr3:47458583-47458839(-)$1	256	146	174	10.1073
CUGCCCUGAACGAACUGCGUGUGGGGCC	chr5:175954572-175954827(-)$1	255	109	137	12.5541
GGACCCGGGACUGAGUGGGCCCCGGGCA	chr16:30935310-30935586(+)$1	276	126	154	10.8164
GGGGUCAAGUCUGUGUCCUAGGUGUACC	chr12:56120884-56121223(-)$1	339	3	31	9.9802
GGGAGACUGGGAGGGCUUCCGGGGCUGC	chr15:34393760-34394115(-)$1	355	23	51	10.9337
CACCUGGCGGGAGGACCCCCUUCAGGCU	chr19:12912448-12912713(-)$1	265	178	206	10.6262
CGGGACGUGCGCGCUUGGUGCACGAUCC	chr6:167369793-167370048(-)$1	255	95	123	12.8513
UUCCCGCAAGGUCGCUUUGCAGAGCGGG	chr9:32572921-32573195(-)$1	274	39	67	11.2196
UCUUCGGGGACCUCCGUGGCGCGGAAGA	chr11:118965144-118965396(-)$1	252	12	40	13.2349
CUGUCCGGCCCCGGCCAGGCGCCGGGCG	chr1:27561068-27561388(+)$1	320	196	224	12.3921
GAGGUUAGAGACCGAGCUGUCGGCCCUA	chr2:20549803-20550080(-)$1	277	32	60	9.7093
CAGGGCAGGUGACGGACAGAGGCCUGGA	chr9:139249218-139249502(+)$1	284	173	201	10.2461
GGGGACCCUCCGGCUCUUGGGGGUCCCA	chr11:85779680-85780006(-)$1	326	109	137	11.2413
GUCCUUCCCUGGGGGGGUGGGGAGAGGG	chr11:46403153-46403407(+)$1	254	13	41	11.2181
GGGGUCCCUCAGGGGGGUUGGGGGUAGC	chr10:88854837-88855112(+)$1	275	182	210	12.1440
UGUGGAACCGUGGGAGACGCGGAACACA	chr16:87738797-87739069(-)$1	272	81	109	10.3625
GGCGACGAAGACGCGGAGGAGGCGGAGC	chr2:54197725-54198044(-)$1	319	30	58	11.5393
gggacucggagcgggauccggagcggga	chr20:57582066-57582331(-)$1	265	99	127	8.8576
UUCGCUGGUGGCGUCGGAGCCGAGCCGG	chr2:27294366-27294597(-)$1	231	92	120	9.0502
GUCGCGCCCAGGAAAUGCCCUAUACGCG	chr19:50168062-50168371(-)$1	309	237	265	10.1021
GCACUCAGGAGGAAGGGCCAGUGUGAGG	chr3:184080232-184080540(+)$1	308	142	170	11.7466
UGGCCAGACCGGGCUCACCACCCUGGCG	chr19:40971417-40971744(-)$1	327	184	212	11.9130

#DB
(((((.((.(((.....))).)))))))	chr11:95522561-95522845(-)$1	1	111	139	11.4759
((.(.(.((.(.....).)).).).)))	chr4:2935992-2936267(-)$1	1	182	210	10.4175
(.((((((((((.....)))))..))))	chr11:64124699-64124950(+)$1	1	92	120	11.1540
)((((.((((((.....))))))...))	chr3:48664394-48664754(-)$1	1	118	146	10.3289
((((...(((((.....)))))....))	chr7:100172553-100172756(-)$1	1	166	194	11.5003
.(((((((..((.....))....)))))	chr12:56632326-56632593(-)$1	1	113	141	12.7761
((((((((((((.....))))))))))(	chr1:150947024-150947320(-)$1	1	17	45	11.1901
.((....(((((.....))))))).)))	chr3:195635692-195635953(-)$1	1	38	66	10.2254
.(.((((((((((...))))))))).).	chr16:18573219-18573483(-)$1	1	151	179	9.2337
((((....((((.....)))).))))))	chr14:35761558-35761820(+)$1	1	99	127	11.8467
(((..(((((((((...)))))))))))	chr9:86584580-86584815(-)$1	1	159	187	9.0064
((.(((...(((.....)))...)))..	chr3:48670963-48671194(-)$1	1	24	52	13.0944
(((.((((.(((.....))))))).)))	chr19:15442552-15442791(-)$1	1	134	162	12.5567
(((.(((((((......))))))).)))	chr17:56406010-56406220(-)$1	1	28	56	9.7982
((.((((.((((.....)))))))).))	chr1:36106913-36107193(-)$1	1	158	186	9.5679
((((.((((((......)))).)).)))	chr19:18548006-18548252(-)$1	1	45	73	8.7263
((((.(((.(((.....))).))).)))	chr18:9475519-9475795(+)$1	1	132	160	13.7289
(((((((((.(((....))).)))))))	chr10:75578192-75578491(-)$1	1	209	237	9.4033
(((((.((.(((.....)))))))))))	chr14:57734898-57735166(-)$1	1	121	149	11.9501
((.(((((((.(.....).))))))).)	chr12:7024392-7024702(+)$1	1	280	308	11.8391
.(((((..((((......)))).)))))	chr18:48556601-48556889(+)$1	1	210	238	9.8332
(...((((((.(.....).))))))..)	chr20:62272050-62272329(-)$1	1	133	161	10.2838
.(.(((((.(.(......).)))))).)	chr9:35072427-35072689(-)$1	1	82	110	10.1873
(((((((((.(((...))))))))))))	chr19:1881983-1882203(-)$1	1	186	214	9.5027
(.((((((((((......))))...)))	chr2:242255515-242255802(+)$1	1	11	39	8.4273
)(((((...(((.....)))..))))).	chr17:76182929-76183198(-)$1	1	35	63	12.6066
))(((((.(.((......)).).)))))	chr7:54826749-54827006(-)$1	1	171	199	10.4364
.(((((((.(((.....))).)))))..	chr20:3995639-3995926(-)$1	1	181	209	12.3068
(((((.(...((.....))...).))))	chr7:150756621-150756902(+)$1	1	129	157	13.6297
(((((.(...((.....))...).))))	chr7:150756702-150756946(+)$1	1	48	76	13.6297
)..(((((.(((.....)))...)))))	chr1:12226992-12227223(+)$1	1	201	229	10.8755
(((.(((..((......))..))).)))	chr9:80646041-80646316(-)$1	1	190	218	9.4082
((((((((((((.....))).)))))))	chr2:198364907-198365159(+)$1	1	96	124	11.1707
.))))))(((((.....)))))((((((	chr16:1361820-1362074(+)$1	1	84	112	10.4192
((.(.(((((((.....)))))))).))	chr10:75579268-75579558(-)$1	1	16	44	12.1004
(...((.(.(((.....))).).)).))	chr4:152020694-152020933(+)$1	1	19	47	12.1729
(.(((((..(((...))).))))).)))	chr19:19029988-19030274(-)$1	1	24	52	9.0775
((.(((.((((.....)))).))).)))	chr3:47458583-47458839(-)$1	1	146	174	10.1073
(((((((..(((.....)))..)))).)	chr5:175954572-175954827(-)$1	1	109	137	12.5541
.(.((((((.((.....)).))))))).	chr16:30935310-30935586(+)$1	1	126	154	10.8164
(((((((..((((.....)))))).)))	chr12:56120884-56121223(-)$1	1	3	31	9.9802
((.((.((.(((.....))).)).)).)	chr15:34393760-34394115(-)$1	1	23	51	10.9337
(((((((.(((......))).))))).)	chr19:12912448-12912713(-)$1	1	178	206	10.6262
((((((((((((.....))))))).)))	chr6:167369793-167370048(-)$1	1	95	123	12.8513
(((((((...((......))...)))))	chr9:32572921-32573195(-)$1	1	39	67	11.2196
(((((.(.(.((.....))).).)))))	chr11:118965144-118965396(-)$1	1	12	40	13.2349
(((((((((.((.....)).))))))))	chr1:27561068-27561388(+)$1	1	196	224	12.3921
(.((((...(((......))))))))))	chr2:20549803-20550080(-)$1	1	32	60	9.7093
(((..(((((..(.....)..)))))..	chr9:139249218-139249502(+)$1	1	173	201	10.2461
.(((((((.(((.....)))))))))).	chr11:85779680-85780006(-)$1	1	109	137	11.2413
.(((((((((.(.....).))).)))))	chr11:46403153-46403407(+)$1	1	13	41	11.2181
(((.((((((((.....))))))).).)	chr10:88854837-88855112(+)$1	1	182	210	12.1440
((((...(((((.....)))))..))))	chr16:87738797-87739069(-)$1	1	81	109	10.3625
(((..((....(.....)....))..))	chr2:54197725-54198044(-)$1	1	30	58	11.5393
(((.((((...(((...)))...)))).	chr20:57582066-57582331(-)$1	1	99	127	8.8576
((((((..((((......)))))).)))	chr2:27294366-27294597(-)$1	1	92	120	9.0502
(((((((..(((......)))....)))	chr19:50168062-50168371(-)$1	1	237	265	10.1021
.(.((((.(.((.....))..).)))).	chr3:184080232-184080540(+)$1	1	142	170	11.7466
))(((((...((.....))...))))).	chr19:40971417-40971744(-)$1	1	184	212	11.9130

#PSSM
e : 0.25	d : 0.15	f : 0.11	[ : 0.11	c : 0.10	b : 0.05	= : 0.03	i : 0.03	D : 0.03	B : 0.01	g : 0.01	" : 0.01	] : 0.01	: : 0.01	! : 0.01	
e : 0.27	f : 0.11	d : 0.11	b : 0.08	[ : 0.06	a : 0.06	c : 0.06	g : 0.05	= : 0.03	" : 0.03	i : 0.03	B : 0.01	: : 0.01	D : 0.01	
e : 0.33	[ : 0.18	f : 0.10	d : 0.08	g : 0.06	= : 0.05	c : 0.05	b : 0.03	" : 0.03	i : 0.03	: : 0.01	
e : 0.33	d : 0.11	f : 0.08	g : 0.08	[ : 0.08	a : 0.05	= : 0.05	! : 0.05	c : 0.03	" : 0.03	i : 0.03	# : 0.01	b : 0.01	
e : 0.25	d : 0.13	f : 0.10	g : 0.10	[ : 0.06	= : 0.05	i : 0.05	! : 0.05	c : 0.05	b : 0.05	" : 0.03	# : 0.03	a : 0.01	
e : 0.18	g : 0.13	[ : 0.11	d : 0.11	b : 0.08	f : 0.08	i : 0.06	c : 0.06	= : 0.05	" : 0.03	# : 0.03	a : 0.01	
e : 0.15	g : 0.13	b : 0.10	f : 0.10	d : 0.10	" : 0.08	i : 0.06	[ : 0.05	= : 0.05	a : 0.05	# : 0.03	c : 0.03	! : 0.03	
e : 0.15	g : 0.13	" : 0.11	! : 0.11	[ : 0.08	b : 0.06	f : 0.06	i : 0.06	d : 0.06	= : 0.03	# : 0.03	c : 0.03	a : 0.01	
[ : 0.16	" : 0.13	d : 0.11	e : 0.10	! : 0.10	g : 0.10	i : 0.06	f : 0.05	a : 0.05	= : 0.03	c : 0.03	b : 0.01	# : 0.01	
c : 0.30	[ : 0.13	d : 0.13	e : 0.10	g : 0.08	" : 0.08	f : 0.03	i : 0.03	! : 0.01	= : 0.01	a : 0.01	b : 0.01	# : 0.01	
c : 0.32	b : 0.18	d : 0.13	e : 0.08	g : 0.06	[ : 0.06	i : 0.03	a : 0.01	f : 0.01	= : 0.01	! : 0.01	# : 0.01	" : 0.01	
c : 0.32	b : 0.16	d : 0.10	e : 0.08	a : 0.08	o : 0.06	g : 0.05	n : 0.03	i : 0.03	f : 0.01	= : 0.01	! : 0.01	
n : 0.66	o : 0.20	c : 0.05	i : 0.03	l : 0.01	d : 0.01	a : 0.01	
n : 0.69	o : 0.20	l : 0.05	i : 0.01	m : 0.01	c : 0.01	
n : 0.69	o : 0.20	l : 0.08	m : 0.01	
n : 0.69	o : 0.20	l : 0.06	m : 0.01	c : 0.01	
n : 0.66	o : 0.20	l : 0.03	c : 0.03	a : 0.01	i : 0.01	m : 0.01	d : 0.01	
c : 0.30	b : 0.15	o : 0.13	e : 0.08	d : 0.06	g : 0.06	a : 0.06	i : 0.03	n : 0.03	] : 0.01	f : 0.01	= : 0.01	
c : 0.32	b : 0.20	d : 0.13	e : 0.08	g : 0.06	] : 0.06	i : 0.03	a : 0.03	f : 0.01	= : 0.01	4 : 0.01	
c : 0.32	d : 0.13	e : 0.10	g : 0.08	b : 0.05	i : 0.05	] : 0.05	3 : 0.05	2 : 0.05	f : 0.03	4 : 0.03	= : 0.01	a : 0.01	
] : 0.20	d : 0.13	3 : 0.11	e : 0.10	g : 0.10	2 : 0.08	i : 0.06	f : 0.05	c : 0.05	4 : 0.03	= : 0.01	b : 0.01	a : 0.01	
e : 0.16	3 : 0.11	d : 0.11	g : 0.11	a : 0.08	i : 0.06	c : 0.06	b : 0.05	f : 0.05	4 : 0.05	= : 0.03	] : 0.03	2 : 0.03	
e : 0.13	g : 0.13	b : 0.11	] : 0.11	i : 0.08	3 : 0.08	d : 0.06	f : 0.05	4 : 0.05	c : 0.05	2 : 0.03	= : 0.03	a : 0.03	
e : 0.20	g : 0.15	b : 0.10	d : 0.10	i : 0.08	f : 0.06	c : 0.06	= : 0.05	] : 0.05	2 : 0.03	3 : 0.03	4 : 0.03	a : 0.01	
e : 0.23	] : 0.22	d : 0.10	g : 0.08	i : 0.08	f : 0.06	= : 0.05	3 : 0.03	4 : 0.03	b : 0.03	c : 0.01	a : 0.01	2 : 0.01	
e : 0.35	d : 0.16	g : 0.08	f : 0.06	] : 0.06	i : 0.06	= : 0.05	c : 0.03	2 : 0.03	3 : 0.01	4 : 0.01	b : 0.01	a : 0.01	
e : 0.30	d : 0.22	] : 0.10	g : 0.06	2 : 0.06	f : 0.05	= : 0.05	i : 0.05	a : 0.03	c : 0.03	b : 0.01	
e : 0.27	d : 0.18	c : 0.08	f : 0.06	] : 0.06	g : 0.05	= : 0.05	2 : 0.05	i : 0.05	: : 0.05	b : 0.03	F : 0.01	a : 0.01	

#score	648.7361525459208
#seq	59
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_UTR_m3_run2.txt

#BEAR
d!!ggggggg[ammmma]ggggggg33	chr1:114472341-114472644(+)$1	303	75	102	12.5716
============lll============	chr17:21101268-21101589(-)$1	321	65	92	12.4972
[dddd####cccmmmmccc333ddddc	chr19:2426672-2426925(-)$1	253	6	33	11.1490
cc[iiiiiiiiinnnnniiiiiiiii]	chr11:404490-404772(+)$1	282	179	206	10.1409
dd"""gggggggmmmmggggggg333d	chr4:10076453-10076750(-)$1	297	114	141	12.4496
dddd[gggggggmmmmggggggg22dd	chr19:56672044-56672319(+)$1	275	8	35	11.1565
ggggggg[ddddmmmmddddggggggg	chr1:16482250-16482563(-)$1	313	183	210	11.0540
cc[bb[a!!cccmmmmccc22a]bb]c	chr1:19209778-19210023(-)$1	245	121	148	11.5650
b[cccccc!!bbmmmmbb]ccc]ccc]	chr9:136229352-136229562(-)$1	210	180	207	11.0769
!!ccc[ffffffmmmmffffff22ccc	chr11:85668926-85669179(-)$1	253	161	188	9.8960
d"""iiiiiiiiillliiiiiiiii]d	chr16:11642209-11642489(-)$1	280	119	146	11.2136
=======[ddddmmmmdddd]======	chr16:89980228-89980541(+)$1	313	256	283	11.9980
bb[eeeee[cccmmmmccceeeee]bb	chr2:239972694-239972986(-)$1	292	41	68	10.3140
===========4444============	chr2:242707671-242707994(+)$1	323	146	173	10.9231
fffff[bb[cccmmmmccc]bb]ffff	chr9:136229402-136229614(-)$1	212	93	120	11.0085
!ffffff!!cccmmmmccc333fffff	chr22:39217265-39217505(-)$1	240	58	85	12.3146
cccgggggggooooooggggggg22cc	chr16:18812649-18812962(-)$1	313	35	62	9.3592
b[eeeee"""bbmmmmbb4444eeeee	chr12:54576206-54576476(-)$1	270	113	140	10.1971
============mmmm===========	chr17:37884705-37884977(+)$1	272	81	108	14.2450
fffff[bb[cccmmmmccc]bb]ffff	chr9:136229461-136229686(-)$1	225	165	192	11.0085
[ffffff!!cccmmmmccc22ffffff	chr19:17513901-17514139(-)$1	238	53	80	11.6816
gggg####ddddmmmmdddd333gggg	chr14:24114637-24114894(+)$1	257	104	131	10.7366
iiiiiiii[cccmmmmccc]iiiiiii	chr4:16163712-16163977(-)$1	265	122	149	13.7654
:ggggggg[cccmmmmccc]ggggggg	chr2:74436968-74437248(+)$1	280	146	173	12.3974
ca[iiiiiiiiimmmmiiiiiiiii]a	chr1:154530974-154531230(-)$1	256	52	79	13.3178
ee"""gggggggmmmmggggggg333e	chr7:100276553-100276792(+)$1	239	113	140	12.5011
=============nnnnn=========	chr17:63534077-63534329(-)$1	252	98	125	9.9785
b"""ccc[ddddmmmmdddd]ccc444	chr2:75884343-75884565(+)$1	222	45	72	10.2689
[ffffff!!cccmmmmccc22ffffff	chr19:17513877-17514101(-)$1	224	15	42	11.6816
####eeeee[bbmmmmbb]eeeee333	chr4:76649856-76650112(+)$1	256	113	140	10.4524
b[ccc[aeeeeemmmmeeeee]a]ccc	chr18:55711508-55711807(+)$1	299	173	200	9.7585
ggggg!!bb[bbmmmmbbbb22ggggg	chr1:1169570-1169915(+)$1	345	133	160	10.2330
ee[iiiiiiiiillliiiiiiiii]ee	chr7:44252213-44252521(+)$1	308	190	217	10.9425
b[ffffff[cccmmmmcccffffff]b	chr1:182352363-182352615(-)$1	252	193	220	11.2660
dd[iiiiiiiiimmmmiiiiiiiii]d	chr9:117012832-117013044(+)$1	212	50	77	13.0745
iiii[ccc!!bbmmmmbb22ccciiii	chr10:135234405-135234672(+)$1	267	13	40	11.6269
b[dddd"""cccmmmmccc4444dddd	chr15:52970735-52970990(-)$1	255	84	111	10.6795
[dddd[ccc[bbmmmmbb]ccc]dddd	chr9:139735402-139735693(+)$1	291	136	163	9.8440
!ccc[gggggggmmmmggggggg]ccc	chr5:150407715-150408078(+)$1	363	179	206	12.4345
eee!!ccc[cccmmmmccc]ccceeee	chrX:48386855-48387136(+)$1	281	16	43	11.6046
!!gggggggccclllccc22ggggggg	chr3:196304337-196304684(+)$1	347	289	316	10.6882
============mmmm===========	chr5:172744522-172744815(-)$1	293	133	160	14.2450
dd"""gggggggmmmmggggggg]ddd	chr19:47505034-47505322(+)$1	288	62	89	11.8702
dffffff!!cccmmmmcccffffff22	chr8:145159427-145159739(+)$1	312	191	218	11.1303
c:ffffff[cccmmmmccc333fffff	chr11:65365313-65365592(-)$1	279	58	85	11.0081
eeee!!bb[cccmmmmcccbbeeeee2	chr19:3122762-3122990(+)$1	228	165	192	10.1846
ee==========nnnnn==========	chr16:88874828-88875174(+)$1	346	29	56	10.6013
:ccc[gggggggmmmmggggggg]ccc	chr22:37906121-37906344(-)$1	223	187	214	11.4364
cc!!eeeee[bbmmmmbb]eeeee22c	chr11:114310139-114310497(+)$1	358	68	95	9.9796
"""gggggggbbmmmmbb]ggggggg6	chr8:120256227-120256505(+)$1	278	20	47	11.8808

#otherMatches

#Seq PSSM
ggacggcuccggggggcgggggccggg	chr1:114472341-114472644(+)$1	303	75	102	12.5716
AUUUGUUAUUUUUAAAAAAUAACAGAU	chr17:21101268-21101589(-)$1	321	65	92	12.4972
GUUCAUUUCCAUAAACGUGCUUUGAGA	chr19:2426672-2426925(-)$1	253	6	33	11.1490
CGGAGGGGCCCCUCGCUGGGGCCCCUG	chr11:404490-404772(+)$1	282	179	206	10.1409
GGUGAAUGAGCCGGGGGGCUCAUGUUC	chr4:10076453-10076750(-)$1	297	114	141	12.4496
CUCCUCCCUCAGGAGAUUGGGGGUUGG	chr19:56672044-56672319(+)$1	275	8	35	11.1565
UGCGCUGGCCGCGGCCGCGGCGGCGCA	chr1:16482250-16482563(-)$1	313	183	210	11.0540
GGAGAUUGACGCUGCAGCGGAACUCAU	chr1:19209778-19210023(-)$1	245	121	148	11.5650
UUUCCCAGCUGCACUCGCCCUGUGGAC	chr9:136229352-136229562(-)$1	210	180	207	11.0769
CAUAUACCUUUUAAAUAAGGGGAAAUA	chr11:85668926-85669179(-)$1	253	161	188	9.8960
ACUCUCAGAGUGGGGUCCGUUUUGGUU	chr16:11642209-11642489(-)$1	280	119	146	11.2136
acguauguauguguguacauuuguaug	chr16:89980228-89980541(+)$1	313	256	283	11.9980
UAUAAAGAAGCCCAGGGGCUCUUUUUA	chr2:239972694-239972986(-)$1	292	41	68	10.3140
UGGGCAGCGGGGGCACGGGCAGGACCA	chr2:242707671-242707994(+)$1	323	146	173	10.9231
CCGCAGCCGCUGUGGGCAGGGGGUGUG	chr9:136229402-136229614(-)$1	212	93	120	11.0085
GAUCCCAGGACUCGGCAGUGGAUGGGA	chr22:39217265-39217505(-)$1	240	58	85	12.3146
GGGGGCCGUCGGGAAGGGCGGCCGACC	chr16:18812649-18812962(-)$1	313	35	62	9.3592
UGUGGGGCCUGUGCUGACCCCUCCCCA	chr12:54576206-54576476(-)$1	270	113	140	10.1971
UUGUUUUGUUUUUUUAAAGAUGAAAUA	chr17:37884705-37884977(+)$1	272	81	108	14.2450
CCGCAGCCGCUGUGGGCAGGGGGUGUG	chr9:136229461-136229686(-)$1	225	165	192	11.0085
UUGAUCUCAUCAGUUCUGAGCGGGUCA	chr19:17513901-17514139(-)$1	238	53	80	11.6816
AGGGAAAGGAGUAGAAGCUCAGGCCUU	chr14:24114637-24114894(+)$1	257	104	131	10.7366
GGGCCUGUGCUGGGGAUGGGGCAGGCC	chr4:16163712-16163977(-)$1	265	122	149	13.7654
AAACGUUGGAAUGCCCAUUGCAAUGUU	chr2:74436968-74437248(+)$1	280	146	173	12.3974
CCGGAGGUGGCGGCGGCGCCAUCUUGG	chr1:154530974-154531230(-)$1	256	52	79	13.3178
UCACCCCUCUGGAGGGCCGGAGGCAGG	chr7:100276553-100276792(+)$1	239	113	140	12.5011
GCGCAUgugcguggguugcaugcgcau	chr17:63534077-63534329(-)$1	252	98	125	9.9785
cUUUAGGAUUAUCUGAAUGGGCUUUUU	chr2:75884343-75884565(+)$1	222	45	72	10.2689
UUGAUCUCAUCAGUUCUGAGCGGGUCA	chr19:17513877-17514101(-)$1	224	15	42	11.6816
GAGGGGCCGGUAAACCUGGUGGCUGAA	chr4:76649856-76650112(+)$1	256	113	140	10.4524
CCGCAGCCUUCCGGGAGGAAGCGGUGC	chr18:55711508-55711807(+)$1	299	173	200	9.7585
GGCUCCGGGUCAGUCUUGCCAUGGGUU	chr1:1169570-1169915(+)$1	345	133	160	10.2330
CCACUUCAGGCCCAAGGCCUGGGGCGG	chr7:44252213-44252521(+)$1	308	190	217	10.9425
AGAAGUUUAGAUUUUAAUCAAAUUUGU	chr1:182352363-182352615(-)$1	252	193	220	11.2660
UGUGUCUCAUAGGGAUUUAUGGGAUUC	chr9:117012832-117013044(+)$1	212	50	77	13.0745
GCUGAGAGAUGUGGGGGCCCCUCCAGC	chr10:135234405-135234672(+)$1	267	13	40	11.6269
GAGUUGGUAGGGUCGCCCCGGGACAGC	chr15:52970735-52970990(-)$1	255	84	111	10.6795
CCUCAGCUGCGCCCCCGCUCAGGUGAG	chr9:139735402-139735693(+)$1	291	136	163	9.8440
UACAGGUAUGCGUGAUUGUGUGUGUGU	chr5:150407715-150408078(+)$1	363	179	206	12.4345
GGCCGAGGAGGAGCUCUCUGCCUGCCA	chrX:48386855-48387136(+)$1	281	16	43	11.6046
AAUGGAGAAGUCAAUGGCAGUUUUCCA	chr3:196304337-196304684(+)$1	347	289	316	10.6882
ACCCCUGGGGCCGUGGGGUCUCAGGGG	chr5:172744522-172744815(-)$1	293	133	160	14.2450
GGUGUUGAAGUGGAAUCGUUUCAUCCC	chr19:47505034-47505322(+)$1	288	62	89	11.8702
GCGGAGGCCGCGGCGCCGCCCUCCGAU	chr8:145159427-145159739(+)$1	312	191	218	11.1303
GGCCCAACACUGUACCCAGCUGGUUGG	chr11:65365313-65365592(-)$1	279	58	85	11.0081
GGGGCUGGCGGGAUACCCCCCCCCCGG	chr19:3122762-3122990(+)$1	228	165	192	10.1846
GCGGUGGGCCCCUUCAUGGGGCUCACC	chr16:88874828-88875174(+)$1	346	29	56	10.6013
ACUGGGGCUUGUGGGCACAGGCUGCGG	chr22:37906121-37906344(-)$1	223	187	214	11.4364
GCGCCGGCUGCGAGACUGGGGCCGUGG	chr11:114310139-114310497(+)$1	358	68	95	9.9796
cuaguauagcgugaaagcagcuauaca	chr8:120256227-120256505(+)$1	278	20	47	11.8808

#DB
(..(((((((.(....).)))))))..	chr1:114472341-114472644(+)$1	1	75	102	12.5716
((((((((((((...))))))))))))	chr17:21101268-21101589(-)$1	1	65	92	12.4972
.((((....(((....)))...)))))	chr19:2426672-2426925(-)$1	1	6	33	11.1490
((.(((((((((.....))))))))).	chr11:404490-404772(+)$1	1	179	206	10.1409
((...(((((((....)))))))...)	chr4:10076453-10076750(-)$1	1	114	141	12.4496
((((.(((((((....)))))))..))	chr19:56672044-56672319(+)$1	1	8	35	11.1565
(((((((.((((....)))))))))))	chr1:16482250-16482563(-)$1	1	183	210	11.0540
((.((.(..(((....)))..).)).)	chr1:19209778-19210023(-)$1	1	121	148	11.5650
(.((((((..((....)).))).))).	chr9:136229352-136229562(-)$1	1	180	207	11.0769
..(((.((((((....))))))..)))	chr11:85668926-85669179(-)$1	1	161	188	9.8960
(...(((((((((...))))))))).)	chr16:11642209-11642489(-)$1	1	119	146	11.2136
(((((((.((((....)))).))))))	chr16:89980228-89980541(+)$1	1	256	283	11.9980
((.(((((.(((....)))))))).))	chr2:239972694-239972986(-)$1	1	41	68	10.3140
)))))))))))....))))))))))))	chr2:242707671-242707994(+)$1	1	146	173	10.9231
(((((.((.(((....))).)).))))	chr9:136229402-136229614(-)$1	1	93	120	11.0085
.((((((..(((....)))...)))))	chr22:39217265-39217505(-)$1	1	58	85	12.3146
((((((((((......)))))))..))	chr16:18812649-18812962(-)$1	1	35	62	9.3592
(.(((((...((....))....)))))	chr12:54576206-54576476(-)$1	1	113	140	10.1971
((((((((((((....)))))))))))	chr17:37884705-37884977(+)$1	1	81	108	14.2450
(((((.((.(((....))).)).))))	chr9:136229461-136229686(-)$1	1	165	192	11.0085
.((((((..(((....)))..))))))	chr19:17513901-17514139(-)$1	1	53	80	11.6816
((((....((((....))))...))))	chr14:24114637-24114894(+)$1	1	104	131	10.7366
((((((((.(((....))).)))))))	chr4:16163712-16163977(-)$1	1	122	149	13.7654
.(((((((.(((....))).)))))))	chr2:74436968-74437248(+)$1	1	146	173	12.3974
)(.(((((((((....))))))))).)	chr1:154530974-154531230(-)$1	1	52	79	13.3178
((...(((((((....)))))))...)	chr7:100276553-100276792(+)$1	1	113	140	12.5011
(((((((((((((.....)))))))))	chr17:63534077-63534329(-)$1	1	98	125	9.9785
(...(((.((((....)))).)))...	chr2:75884343-75884565(+)$1	1	45	72	10.2689
.((((((..(((....)))..))))))	chr19:17513877-17514101(-)$1	1	15	42	11.6816
....(((((.((....)).)))))...	chr4:76649856-76650112(+)$1	1	113	140	10.4524
(.(((.((((((....))))).).)))	chr18:55711508-55711807(+)$1	1	173	200	9.7585
(((((..((.((....))))..)))))	chr1:1169570-1169915(+)$1	1	133	160	10.2330
((.(((((((((...))))))))).))	chr7:44252213-44252521(+)$1	1	190	217	10.9425
(.((((((.(((....))))))))).)	chr1:182352363-182352615(-)$1	1	193	220	11.2660
((.(((((((((....))))))))).)	chr9:117012832-117013044(+)$1	1	50	77	13.0745
((((.(((..((....))..)))))))	chr10:135234405-135234672(+)$1	1	13	40	11.6269
(.((((...(((....)))....))))	chr15:52970735-52970990(-)$1	1	84	111	10.6795
.((((.(((.((....)).))).))))	chr9:139735402-139735693(+)$1	1	136	163	9.8440
.(((.(((((((....))))))).)))	chr5:150407715-150408078(+)$1	1	179	206	12.4345
(((..(((.(((....))).)))))))	chrX:48386855-48387136(+)$1	1	16	43	11.6046
..((((((((((...)))..)))))))	chr3:196304337-196304684(+)$1	1	289	316	10.6882
((((((((((((....)))))))))))	chr5:172744522-172744815(-)$1	1	133	160	14.2450
((...(((((((....))))))).)))	chr19:47505034-47505322(+)$1	1	62	89	11.8702
(((((((..(((....)))))))))..	chr8:145159427-145159739(+)$1	1	191	218	11.1303
).((((((.(((....)))...)))))	chr11:65365313-65365592(-)$1	1	58	85	11.0081
((((..((.(((....)))))))))).	chr19:3122762-3122990(+)$1	1	165	192	10.1846
))((((((((((.....))))))))))	chr16:88874828-88875174(+)$1	1	29	56	10.6013
.(((.(((((((....))))))).)))	chr22:37906121-37906344(-)$1	1	187	214	11.4364
((..(((((.((....)).)))))..)	chr11:114310139-114310497(+)$1	1	68	95	9.9796
...(((((((((....)).))))))).	chr8:120256227-120256505(+)$1	1	20	47	11.8808

#PSSM
d : 0.14	b : 0.14	= : 0.12	c : 0.12	e : 0.10	[ : 0.08	! : 0.08	g : 0.06	f : 0.04	i : 0.04	: : 0.04	# : 0.02	" : 0.02	
= : 0.12	d : 0.12	c : 0.12	f : 0.12	[ : 0.10	e : 0.10	g : 0.08	! : 0.06	" : 0.06	i : 0.04	b : 0.02	a : 0.02	# : 0.02	: : 0.02	
f : 0.16	= : 0.14	[ : 0.12	" : 0.12	c : 0.12	g : 0.10	d : 0.08	e : 0.06	! : 0.04	i : 0.04	# : 0.02	
g : 0.16	f : 0.16	= : 0.14	i : 0.12	" : 0.10	c : 0.10	d : 0.08	e : 0.06	! : 0.04	b : 0.02	# : 0.02	
f : 0.16	g : 0.14	= : 0.14	i : 0.12	[ : 0.08	c : 0.08	e : 0.08	d : 0.06	" : 0.06	! : 0.04	b : 0.02	# : 0.02	
g : 0.23	= : 0.14	i : 0.12	[ : 0.12	f : 0.12	c : 0.08	e : 0.08	# : 0.04	! : 0.04	d : 0.02	
g : 0.23	= : 0.14	f : 0.14	i : 0.12	c : 0.10	e : 0.08	b : 0.06	# : 0.04	a : 0.04	! : 0.02	" : 0.02	
g : 0.21	= : 0.12	i : 0.12	! : 0.10	c : 0.08	e : 0.08	b : 0.08	[ : 0.06	f : 0.06	# : 0.04	" : 0.04	
g : 0.19	[ : 0.18	! : 0.14	= : 0.12	i : 0.10	d : 0.08	e : 0.06	" : 0.04	# : 0.02	f : 0.02	b : 0.02	c : 0.02	
c : 0.34	g : 0.18	= : 0.12	i : 0.10	d : 0.08	[ : 0.08	! : 0.04	f : 0.02	" : 0.02	e : 0.02	
c : 0.34	b : 0.16	= : 0.12	g : 0.12	i : 0.10	d : 0.08	[ : 0.02	f : 0.02	o : 0.02	e : 0.02	
c : 0.34	b : 0.16	g : 0.12	= : 0.10	i : 0.10	d : 0.08	a : 0.02	f : 0.02	4 : 0.02	o : 0.02	e : 0.02	
m : 0.82	l : 0.06	n : 0.04	i : 0.02	4 : 0.02	o : 0.02	= : 0.02	
m : 0.82	l : 0.08	n : 0.06	4 : 0.02	o : 0.02	
m : 0.82	l : 0.08	n : 0.06	4 : 0.02	o : 0.02	
m : 0.82	n : 0.06	= : 0.04	l : 0.02	o : 0.02	i : 0.02	c : 0.02	
c : 0.34	b : 0.16	g : 0.14	= : 0.08	d : 0.08	i : 0.08	n : 0.06	a : 0.02	f : 0.02	e : 0.02	
c : 0.34	b : 0.16	g : 0.14	= : 0.10	i : 0.10	d : 0.08	] : 0.02	f : 0.02	n : 0.02	e : 0.02	
c : 0.32	g : 0.16	= : 0.12	i : 0.10	] : 0.10	d : 0.08	2 : 0.04	f : 0.02	4 : 0.02	e : 0.02	b : 0.02	
g : 0.18	= : 0.12	i : 0.10	2 : 0.10	] : 0.10	d : 0.08	e : 0.08	3 : 0.06	f : 0.06	c : 0.04	4 : 0.04	b : 0.04	
g : 0.23	= : 0.12	i : 0.12	3 : 0.08	2 : 0.08	c : 0.08	e : 0.08	f : 0.06	b : 0.06	] : 0.04	4 : 0.04	
g : 0.23	= : 0.14	i : 0.12	c : 0.10	f : 0.10	3 : 0.08	e : 0.08	b : 0.04	4 : 0.04	a : 0.02	] : 0.02	2 : 0.02	
g : 0.25	= : 0.14	i : 0.12	f : 0.12	] : 0.10	e : 0.10	c : 0.06	d : 0.02	2 : 0.02	3 : 0.02	a : 0.02	4 : 0.02	
f : 0.16	g : 0.14	= : 0.14	i : 0.14	e : 0.12	] : 0.08	d : 0.06	2 : 0.06	3 : 0.04	c : 0.04	b : 0.02	
f : 0.16	g : 0.14	= : 0.14	i : 0.12	c : 0.10	d : 0.08	3 : 0.06	2 : 0.06	e : 0.06	] : 0.04	b : 0.02	4 : 0.02	
= : 0.14	g : 0.12	c : 0.12	f : 0.12	d : 0.10	] : 0.10	3 : 0.08	e : 0.08	i : 0.06	2 : 0.04	b : 0.02	4 : 0.02	
c : 0.16	= : 0.14	d : 0.14	f : 0.12	g : 0.10	e : 0.08	3 : 0.04	] : 0.04	b : 0.04	i : 0.04	2 : 0.04	a : 0.02	4 : 0.02	6 : 0.02	

#score	567.41051523463
#seq	50
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_transcript_m2_run1.txt

#BEAR
[bb[ccc!!bbnnnnnbb]ccc]bbf	chr6:37787506-37787819(+)$1	313	236	262	8.5366
=============lll==========	chr6:16266582-16266822(+)$1	240	73	99	11.3456
ccc!!dddd[bboooooobb]dddd2	chr11:2398561-2398877(+)$1	316	203	229	9.4016
!!==========mmmm==========	chr4:53578729-53578935(+)$1	206	137	163	12.7331
=========[bbnnnnnbb]======	chr12:6619296-6619603(+)$1	307	275	301	10.7456
::eeeee[a[bbmmmmbb]a]eeeee	chr16:204265-204551(+)$1	286	234	260	9.7709
ddd[a[ccc[bbmmmmbb22ccc]a]	chr2:55276819-55277078(-)$1	259	26	52	11.8875
:bb[bb[bb[bbmmmmbb]bb]bb]b	chrX:152953477-152953693(+)$1	216	14	40	10.0778
fff!!a[bb[bbmmmmbb]bba22ff	chrX:152953540-152953801(+)$1	261	132	158	11.0838
!!bb[dddd[bbmmmmbbdddd]bb]	chr11:809866-810124(+)$1	258	184	210	10.7935
!ffffffa!!bboooooobb22a]ff	chr7:5568726-5568985(-)$1	259	90	116	9.0697
ggggggggggggglllggggggg]gg	chr20:17943380-17943592(-)$1	212	61	87	8.5486
dddd[gggggggmmmmgggggggddd	chr16:30077030-30077350(+)$1	320	85	111	9.0803
a[bb[dddd[bbmmmmbb]dddd]bb	chr19:6424621-6424892(-)$1	271	191	217	11.0467
cc[ccca"""bbmmmmbb]a]ccc]c	chr20:57466518-57466792(+)$1	274	235	261	12.5942
:bb[bb!!a[bbmmmmbb]a22bb]b	chr1:35658199-35658561(-)$1	362	152	178	10.6889
eee[gggggggammmma]ggggggg]	chr6:16266197-16266442(+)$1	245	51	77	10.3964
!!bb[dddd[bbmmmmbbdddd]bb]	chr11:809924-810140(+)$1	216	126	152	10.7935
!===========lll===========	chr16:2015132-2015366(+)$1	234	14	40	11.5603
ccc[ccc!!bbnnnnnbb4444ccc]	chr7:6523601-6523898(-)$1	297	258	284	8.9966
'===========oooooo========	chr19:17973315-17973538(+)$1	223	97	123	10.9985
cccbb!!bb[bbmmmmbb]bb22bb]	chr12:7076539-7076797(-)$1	258	37	63	11.0640
eeeeeeeee[bbmmmmbb]eeeee22	chr20:49547417-49547704(-)$1	287	34	60	10.6045
cdddd!!bb[bbmmmmbb]bb]dddd	chrX:152953601-152953886(+)$1	285	126	152	10.7501
:ccc!!ccc[bboooooobb]ccc22	chr2:232573166-232573418(+)$1	252	83	109	9.3649
iiiiiii"""bbmmmmbb]iiiiiii	chr2:234197219-234197464(+)$1	245	180	206	13.5999
e[bb[gggggggooooooggggggg2	chr1:109643002-109643220(+)$1	218	179	205	9.3523
cccffffff[bbmmmmbbffffff33	chr1:8925282-8925572(-)$1	290	63	89	10.7143
$ggggggg[ccclllccc]ggggggg	chr11:811580-811894(+)$1	314	276	302	9.1782
:bb[eeeee[bbmmmmbb]eeeee]b	chr7:75931979-75932258(+)$1	279	12	38	10.2418
e[a[bb"""cccmmmmccc]bb]a]e	chr16:88870315-88870551(+)$1	236	61	87	9.0312
!===========lll===========	chr16:2015078-2015325(+)$1	247	68	94	11.5603
eeeee[ddddbbmmmmbb]dddd]ee	chr6:34212609-34212864(+)$1	255	96	122	10.1835
ddd!!gggggggooooooggggggg2	chr1:109642946-109643170(+)$1	224	38	64	9.4262
cc[eeeee!!bbmmmmbb]eeeee]c	chr7:75677322-75677621(+)$1	299	262	288	11.4434
ccc!!ccc!!bboooooobb22ccc2	chr16:30078796-30079046(+)$1	250	150	176	10.3037
%%%bb[ccc[bbmmmmbb]ccc22bb	chr7:5570061-5570331(-)$1	270	166	192	9.4669
ddd!!dddd[bbmmmmbb]dddd]dd	chr22:21272027-21272359(+)$1	332	68	94	11.1399
d!!gggggggaooooooa]ggggggg	chr16:30081117-30081420(+)$1	303	149	175	10.0959
ccc!!ccc!!bboooooobb22ccc2	chr16:30078846-30079082(+)$1	236	100	126	10.3037
e[bb[gggggggooooooggggggg2	chr1:109643020-109643250(+)$1	230	161	187	9.3523
ccccgggggggooooooggggggg]c	chr16:30080829-30081092(+)$1	263	57	83	9.3056
eeeccc"""cccmmmmccc333ccc8	chr11:5274382-5274724(-)$1	342	108	134	9.2072
ccc!!ccc!!bbmmmmbb22ccc444	chr1:32479388-32479656(+)$1	268	102	128	12.4053
eeeee[ddddbbmmmmbb]dddd]ee	chr6:34212678-34212944(+)$1	266	27	53	10.1835
!!==========mmmm==========	chr4:53578735-53579001(+)$1	266	131	157	12.7331
[bb[bb[bb[bbmmmmbb]bb]bb]b	chr16:72821494-72821743(-)$1	249	117	143	10.9328
cccccc[cccbbmmmmbb]ccc]ccc	chr7:5569062-5569360(-)$1	298	13	39	11.8870
!!==========mmmm==========	chr4:53578690-53578915(+)$1	225	176	202	12.7331
bb[dddd"""bbmmmmbb333dddd]	chr16:30081060-30081278(+)$1	218	156	182	11.1165
iiiiiii"""bbmmmmbb]iiiiiii	chr2:234197329-234197609(+)$1	280	70	96	13.5999
egggggggbboooooobb]ggggggg	chr2:97543590-97543873(-)$1	283	97	123	9.6349
!!==========mmmm==========	chr4:53578715-53578926(+)$1	211	151	177	12.7331
Eggggggg!!bbmmmmbbggggggge	chr19:24187198-24187410(-)$1	212	5	31	11.7491
'===========oooooo========	chr19:17973296-17973515(+)$1	219	116	142	10.9985
[dddd[ccc[bbmmmmbb]ccc22dd	chr16:204184-204454(+)$1	270	181	207	11.3141
gccc[bb!!cccmmmmccc22bb]cc	chr22:23523266-23523573(+)$1	307	219	245	8.7075

#otherMatches

#Seq PSSM
CGCAGCAAAGCGCCCAGCCUGCCGCC	chr6:37787506-37787819(+)$1	313	236	262	8.5366
aaagguggcacgucggacgugccacc	chr6:16266582-16266822(+)$1	240	73	99	11.3456
gccgcccgcgccgccAUGGGAGUGGA	chr11:2398561-2398877(+)$1	316	203	229	9.4016
ggggggcgggcggcggugcccguccc	chr4:53578729-53578935(+)$1	206	137	163	12.7331
CAGUUGCUGGAGAGAAAUUGUGGUAA	chr12:6619296-6619603(+)$1	307	275	301	10.7456
GAAGCAGCGUCCACCUGGUCUCUGUU	chr16:204265-204551(+)$1	286	234	260	9.7709
UCGCCCUCCAAGCUCCCUGAGGACGA	chr2:55276819-55277078(-)$1	259	26	52	11.8875
cgccgccgccgccaccgccgccgccg	chrX:152953477-152953693(+)$1	216	14	40	10.0778
GCGAGGAGCCGCCGCAGCCGCCGCCG	chrX:152953540-152953801(+)$1	261	132	158	11.0838
GACCGGGCCCGGGGUGCCGGCUGGGG	chr11:809866-810124(+)$1	258	184	210	10.7935
ACCACACCUUCUACAAUGAGCUGCGU	chr7:5568726-5568985(-)$1	259	90	116	9.0697
GCCUCAGUUCCUGUUCUAGGAACUUG	chr20:17943380-17943592(-)$1	212	61	87	8.5486
CGGCUGCGUUCCUCUCGGAACGCGCC	chr16:30077030-30077350(+)$1	320	85	111	9.0803
CAGCACGGGAGGAcccccgcccgggc	chr19:6424621-6424892(-)$1	271	191	217	11.0467
gccgcgccccgccgccgccgccgccg	chr20:57466518-57466792(+)$1	274	235	261	12.5942
agccgccaccgcaucagccgccgccg	chr1:35658199-35658561(-)$1	362	152	178	10.6889
uggcuucacugcugaagucagugaga	chr6:16266197-16266442(+)$1	245	51	77	10.3964
GACCGGGCCCGGGGUGCCGGCUGGGG	chr11:809924-810140(+)$1	216	126	152	10.7935
UGACCACUGGCGUCUCGCUGGUGGUC	chr16:2015132-2015366(+)$1	234	14	40	11.5603
GUCAUCCUGCUGCUGAAGAUCUGGAA	chr7:6523601-6523898(-)$1	297	258	284	8.9966
AGAAUCACUGUUUCUUAUAGCGGUGG	chr19:17973315-17973538(+)$1	223	97	123	10.9985
GAGACUAAGGCGAAUGCGACUCCGUG	chr12:7076539-7076797(-)$1	258	37	63	11.0640
cggccgccgccgcccgcgccggugaa	chr20:49547417-49547704(-)$1	287	34	60	10.6045
cgccgccgccgccgccgccgcccggc	chrX:152953601-152953886(+)$1	285	126	152	10.7501
CUGAAAAGCCAUCUUUGCAUUGUUCC	chr2:232573166-232573418(+)$1	252	83	109	9.3649
CAUCGCACUUCAGAAGUGCUGCGAUG	chr2:234197219-234197464(+)$1	245	180	206	13.5999
GACGAGGCCGGGCUUGUCCCCGGCCA	chr1:109643002-109643220(+)$1	218	179	205	9.3523
GCUGGCUACACUGAUAAGGUGGUCAU	chr1:8925282-8925572(-)$1	290	63	89	10.7143
CGUUUAGGUGGCCCUGCCUCUUAAGC	chr11:811580-811894(+)$1	314	276	302	9.1782
ACUUUUCUGAGCAGACGUCCAGAGCA	chr7:75931979-75932258(+)$1	279	12	38	10.2418
CAGCCGCAAgcgcgcccgcccgcccg	chr16:88870315-88870551(+)$1	236	61	87	9.0312
UGACCACUGGCGUCUCGCUGGUGGUC	chr16:2015078-2015325(+)$1	247	68	94	11.5603
UGGGACUGGACAGCUUUGCUCCGCUC	chr6:34212609-34212864(+)$1	255	96	122	10.1835
UACACUUUGAUCUUAUUUGAUCGGAU	chr1:109642946-109643170(+)$1	224	38	64	9.4262
GGCCCGGGCCACGUGCGUCCCCGGUU	chr7:75677322-75677621(+)$1	299	262	288	11.4434
GUUAUCAAAUCCAAGGGCGGUGUUGU	chr16:30078796-30079046(+)$1	250	150	176	10.3037
CCCGCCGCCAGGUAAGCCCGGCCAGC	chr7:5570061-5570331(-)$1	270	166	192	9.4669
UCUGAGCGCUCCUCGAGGUGUGCGAG	chr22:21272027-21272359(+)$1	332	68	94	11.1399
CUGCAGGCCUCUGCCCUGAAGGCCUG	chr16:30081117-30081420(+)$1	303	149	175	10.0959
GUUAUCAAAUCCAAGGGCGGUGUUGU	chr16:30078846-30079082(+)$1	236	100	126	10.3037
GACGAGGCCGGGCUUGUCCCCGGCCA	chr1:109643020-109643250(+)$1	230	161	187	9.3523
CCAACAUGGUCACCCCAGGCCAUGCU	chr16:30080829-30081092(+)$1	263	57	83	9.3056
UGACCGUUUUGGCAAUCCAUUUCGGC	chr11:5274382-5274724(-)$1	342	108	134	9.2072
GGCUUCGGUCGCUACCGCUCCCGCUC	chr1:32479388-32479656(+)$1	268	102	128	12.4053
UGGGACUGGACAGCUUUGCUCCGCUC	chr6:34212678-34212944(+)$1	266	27	53	10.1835
ggggggcgggcggcggugcccguccc	chr4:53578735-53579001(+)$1	266	131	157	12.7331
ggcggcgguggcggcggcggcggcgg	chr16:72821494-72821743(-)$1	249	117	143	10.9328
GUGGCCAGGGCGGGGGCGACCUCGGC	chr7:5569062-5569360(-)$1	298	13	39	11.8870
ggggggcgggcggcggugcccguccc	chr4:53578690-53578915(+)$1	225	176	202	12.7331
AGUGCCCCCUGCUGAAGCCCUGGGCC	chr16:30081060-30081278(+)$1	218	156	182	11.1165
CAUCGCACUUCAGAAGUGCUGCGAUG	chr2:234197329-234197609(+)$1	280	70	96	13.5999
GAGCUGCAGCUGCUGUGCAUGCAGUU	chr2:97543590-97543873(-)$1	283	97	123	9.6349
ggggggcgggcggcggugcccguccc	chr4:53578715-53578926(+)$1	211	151	177	12.7331
CUGUCUCAUUGGCUGACCUGAGGCAA	chr19:24187198-24187410(-)$1	212	5	31	11.7491
AGAAUCACUGUUUCUUAUAGCGGUGG	chr19:17973296-17973515(+)$1	219	116	142	10.9985
CGUAUCCUCUGUCCUGACCGAGAAGU	chr16:204184-204454(+)$1	270	181	207	11.3141
CGAGGCCCGGCCCGACGGCGAGGGUU	chr22:23523266-23523573(+)$1	307	219	245	8.7075

#DB
.((.(((..((.....)).))).)))	chr6:37787506-37787819(+)$1	1	236	262	8.5366
(((((((((((((...))))))))))	chr6:16266582-16266822(+)$1	1	73	99	11.3456
(((..((((.((......)).)))).	chr11:2398561-2398877(+)$1	1	203	229	9.4016
..((((((((((....))))))))))	chr4:53578729-53578935(+)$1	1	137	163	12.7331
(((((((((.((.....)).))))))	chr12:6619296-6619603(+)$1	1	275	301	10.7456
..(((((.(.((....)).).)))))	chr16:204265-204551(+)$1	1	234	260	9.7709
(((.(.(((.((....))..))).).	chr2:55276819-55277078(-)$1	1	26	52	11.8875
.((.((.((.((....)).)).)).)	chrX:152953477-152953693(+)$1	1	14	40	10.0778
(((..(.((.((....)).)))..))	chrX:152953540-152953801(+)$1	1	132	158	11.0838
..((.((((.((....)))))).)).	chr11:809866-810124(+)$1	1	184	210	10.7935
.(((((((..((......))..).))	chr7:5568726-5568985(-)$1	1	90	116	9.0697
(((((((((((((...))))))).))	chr20:17943380-17943592(-)$1	1	61	87	8.5486
((((.(((((((....))))))))))	chr16:30077030-30077350(+)$1	1	85	111	9.0803
(.((.((((.((....)).)))).))	chr19:6424621-6424892(-)$1	1	191	217	11.0467
((.((((...((....)).).))).)	chr20:57466518-57466792(+)$1	1	235	261	12.5942
.((.((..(.((....)).)..)).)	chr1:35658199-35658561(-)$1	1	152	178	10.6889
(((.((((((((....).))))))).	chr6:16266197-16266442(+)$1	1	51	77	10.3964
..((.((((.((....)))))).)).	chr11:809924-810140(+)$1	1	126	152	10.7935
.(((((((((((...)))))))))))	chr16:2015132-2015366(+)$1	1	14	40	11.5603
(((.(((..((.....))....))).	chr7:6523601-6523898(-)$1	1	258	284	8.9966
.(((((((((((......))))))))	chr19:17973315-17973538(+)$1	1	97	123	10.9985
(((((..((.((....)).))..)).	chr12:7076539-7076797(-)$1	1	37	63	11.0640
(((((((((.((....)).)))))..	chr20:49547417-49547704(-)$1	1	34	60	10.6045
(((((..((.((....)).)).))))	chrX:152953601-152953886(+)$1	1	126	152	10.7501
.(((..(((.((......)).)))..	chr2:232573166-232573418(+)$1	1	83	109	9.3649
(((((((...((....)).)))))))	chr2:234197219-234197464(+)$1	1	180	206	13.5999
(.((.(((((((......))))))).	chr1:109643002-109643220(+)$1	1	179	205	9.3523
(((((((((.((....))))))))..	chr1:8925282-8925572(-)$1	1	63	89	10.7143
.(((((((.(((...))).)))))))	chr11:811580-811894(+)$1	1	276	302	9.1782
.((.(((((.((....)).))))).)	chr7:75931979-75932258(+)$1	1	12	38	10.2418
(.(.((...(((....))).)).).)	chr16:88870315-88870551(+)$1	1	61	87	9.0312
.(((((((((((...)))))))))))	chr16:2015078-2015325(+)$1	1	68	94	11.5603
(((((.((((((....)).)))).))	chr6:34212609-34212864(+)$1	1	96	122	10.1835
(((..(((((((......))))))).	chr1:109642946-109643170(+)$1	1	38	64	9.4262
((.(((((..((....)).))))).)	chr7:75677322-75677621(+)$1	1	262	288	11.4434
(((..(((..((......))..))).	chr16:30078796-30079046(+)$1	1	150	176	10.3037
...((.(((.((....)).)))..))	chr7:5570061-5570331(-)$1	1	166	192	9.4669
(((..((((.((....)).)))).))	chr22:21272027-21272359(+)$1	1	68	94	11.1399
(..((((((((......).)))))))	chr16:30081117-30081420(+)$1	1	149	175	10.0959
(((..(((..((......))..))).	chr16:30078846-30079082(+)$1	1	100	126	10.3037
(.((.(((((((......))))))).	chr1:109643020-109643250(+)$1	1	161	187	9.3523
)((((((((((......))))))).)	chr16:30080829-30081092(+)$1	1	57	83	9.3056
((((((...(((....)))...))).	chr11:5274382-5274724(-)$1	1	108	134	9.2072
(((..(((..((....))..)))...	chr1:32479388-32479656(+)$1	1	102	128	12.4053
(((((.((((((....)).)))).))	chr6:34212678-34212944(+)$1	1	27	53	10.1835
..((((((((((....))))))))))	chr4:53578735-53579001(+)$1	1	131	157	12.7331
.((.((.((.((....)).)).)).)	chr16:72821494-72821743(-)$1	1	117	143	10.9328
((((((.(((((....)).))).)))	chr7:5569062-5569360(-)$1	1	13	39	11.8870
..((((((((((....))))))))))	chr4:53578690-53578915(+)$1	1	176	202	12.7331
((.((((...((....))...)))).	chr16:30081060-30081278(+)$1	1	156	182	11.1165
(((((((...((....)).)))))))	chr2:234197329-234197609(+)$1	1	70	96	13.5999
)(((((((((......)).)))))))	chr2:97543590-97543873(-)$1	1	97	123	9.6349
..((((((((((....))))))))))	chr4:53578715-53578926(+)$1	1	151	177	12.7331
((((((((..((....)))))))))(	chr19:24187198-24187410(-)$1	1	5	31	11.7491
.(((((((((((......))))))))	chr19:17973296-17973515(+)$1	1	116	142	10.9985
.((((.(((.((....)).)))..))	chr16:204184-204454(+)$1	1	181	207	11.3141
)(((.((..(((....)))..)).))	chr22:23523266-23523573(+)$1	1	219	245	8.7075

#PSSM
c : 0.21	! : 0.15	e : 0.15	: : 0.08	d : 0.08	[ : 0.05	= : 0.03	g : 0.03	' : 0.03	i : 0.03	f : 0.01	a : 0.01	$ : 0.01	% : 0.01	b : 0.01	E : 0.01	
c : 0.22	! : 0.12	b : 0.10	= : 0.10	d : 0.10	e : 0.08	g : 0.07	[ : 0.07	f : 0.03	i : 0.03	: : 0.01	% : 0.01	
c : 0.19	b : 0.17	= : 0.17	e : 0.10	d : 0.10	g : 0.07	[ : 0.05	f : 0.03	i : 0.03	a : 0.01	% : 0.01	! : 0.01	
= : 0.17	[ : 0.15	! : 0.12	b : 0.12	c : 0.10	e : 0.08	g : 0.08	d : 0.07	f : 0.03	i : 0.03	
= : 0.17	! : 0.14	[ : 0.12	g : 0.12	e : 0.10	b : 0.10	c : 0.08	d : 0.05	f : 0.03	i : 0.03	a : 0.01	
g : 0.19	= : 0.17	c : 0.14	d : 0.10	[ : 0.08	b : 0.08	e : 0.07	! : 0.05	f : 0.03	i : 0.03	a : 0.01	
g : 0.19	= : 0.17	c : 0.15	d : 0.14	e : 0.07	[ : 0.07	! : 0.05	f : 0.03	i : 0.03	" : 0.03	a : 0.01	b : 0.01	
g : 0.19	= : 0.17	c : 0.14	d : 0.12	" : 0.10	b : 0.08	! : 0.07	e : 0.05	[ : 0.01	a : 0.01	f : 0.01	
= : 0.17	! : 0.15	g : 0.14	d : 0.12	b : 0.10	" : 0.10	c : 0.08	a : 0.03	e : 0.03	f : 0.01	[ : 0.01	
[ : 0.35	= : 0.15	g : 0.14	! : 0.10	c : 0.08	" : 0.07	b : 0.05	d : 0.03	
b : 0.61	= : 0.15	g : 0.12	c : 0.07	a : 0.01	o : 0.01	
b : 0.57	= : 0.15	g : 0.08	c : 0.07	o : 0.05	n : 0.03	a : 0.01	
m : 0.63	o : 0.22	n : 0.05	l : 0.05	= : 0.01	g : 0.01	
m : 0.63	o : 0.22	l : 0.08	n : 0.05	
m : 0.63	o : 0.22	l : 0.08	n : 0.05	
m : 0.63	o : 0.22	n : 0.05	l : 0.03	= : 0.03	c : 0.01	
b : 0.52	o : 0.21	= : 0.12	c : 0.07	g : 0.03	n : 0.01	a : 0.01	
b : 0.54	o : 0.17	= : 0.12	c : 0.07	g : 0.05	] : 0.01	a : 0.01	
] : 0.42	= : 0.15	g : 0.14	b : 0.10	c : 0.05	2 : 0.03	d : 0.03	4 : 0.01	f : 0.01	3 : 0.01	
g : 0.19	b : 0.17	= : 0.15	d : 0.10	c : 0.07	a : 0.05	2 : 0.05	e : 0.05	] : 0.03	i : 0.03	3 : 0.03	4 : 0.01	f : 0.01	
g : 0.19	= : 0.17	c : 0.10	b : 0.10	d : 0.10	2 : 0.08	] : 0.07	e : 0.05	i : 0.03	3 : 0.03	4 : 0.01	f : 0.01	
g : 0.19	= : 0.17	c : 0.14	d : 0.14	2 : 0.08	e : 0.07	] : 0.05	i : 0.03	b : 0.03	a : 0.01	4 : 0.01	f : 0.01	3 : 0.01	
g : 0.19	= : 0.17	c : 0.14	d : 0.12	] : 0.08	e : 0.07	b : 0.07	2 : 0.07	i : 0.03	a : 0.01	f : 0.01	
= : 0.17	g : 0.15	] : 0.14	b : 0.12	c : 0.12	d : 0.07	e : 0.07	2 : 0.05	i : 0.03	f : 0.01	a : 0.01	4 : 0.01	
= : 0.17	g : 0.15	] : 0.14	b : 0.10	d : 0.10	c : 0.10	e : 0.05	f : 0.03	2 : 0.03	i : 0.03	a : 0.01	3 : 0.01	4 : 0.01	
= : 0.17	2 : 0.14	] : 0.12	b : 0.10	e : 0.08	c : 0.08	g : 0.07	d : 0.07	f : 0.05	i : 0.03	3 : 0.01	8 : 0.01	4 : 0.01	

#score	606.5707445968228
#seq	57
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_UTR_m3_run1.txt

#BEAR
iiiiiiiipppppppiiiiiiiii33	chr3:41241459-41241737(+)$1	278	126	152	17.1780
c!!eeeeepppppppeeeee22ccc8	chr16:88922543-88922825(-)$1	282	178	204	14.4361
d[ccc!!apppppppa22ccc22ddd	chr16:30959815-30960084(+)$1	269	172	198	15.7086
[dddd[bbpppppppbb]dddda333	chr19:4455156-4455424(-)$1	268	234	260	15.7441
ccc!!cccpppppppccc22ccc:::	chr11:126146105-126146396(+)$1	291	55	81	14.1856
d"""a[bbpppppppbb]a333dddd	chr6:33290424-33290693(-)$1	269	124	150	16.5009
ggggg[bbpppppppbb]ggggggg4	chr3:10320952-10321247(+)$1	295	13	39	17.5351
fff[a[bbpppppppbba]fffffff	chr22:20862367-20862698(+)$1	331	3	29	16.0364
gggggg[apppppppa]ggggggg]d	chr12:64798468-64798740(+)$1	272	222	248	16.9322
&ccc[cccpppppppccc]ccc333a	chr12:51476761-51477097(-)$1	336	152	178	16.8830
[ccc[cccpppppppccc]ccc]add	chr10:102761244-102761504(+)$1	260	208	234	16.9609
gggggcccpppppppccc22gggggg	chr1:47695064-47695313(-)$1	249	23	49	16.8991
""ffffffpppppppffffff333dd	chr20:32441342-32441603(+)$1	261	61	87	15.8937
#gggggggpppppppggggggg22bb	chr9:123630782-123631065(-)$1	283	39	65	16.4226
========ppppppp===========	chr17:7477129-7477404(+)$1	275	219	245	17.6180
ff[cccbbpppppppbb22cccffff	chr11:60658330-60658663(-)$1	333	28	54	15.9506
ggggg[arrrrrrrrra]ggggggg:	chr8:101964422-101964724(-)$1	302	53	79	12.4937
===[ddddpppppppdddd]======	chr4:123747839-123748096(+)$1	257	168	194	15.4117
d[bb[cccpppppppccc]bb22ddd	chr5:137088347-137088567(-)$1	220	56	82	15.7222
=====[bbpppppppbb]========	chr8:87354964-87355252(+)$1	288	189	215	17.9404
:gggggggpppppppgggggggiiii	chr2:64068029-64068392(+)$1	363	42	68	15.7921
ffffffbbpppppppbb]ffffff]c	chr12:123997754-123998009(-)$1	255	7	33	15.7065
[a[a[a[arrrrrrrrra]a]a]a]a	chr19:42398119-42398386(+)$1	267	69	95	12.8859
========ppppppp===========	chr14:70238175-70238423(+)$1	248	69	95	17.6180
!ccc[cccpppppppccc]ccc22gg	chr4:83931803-83932095(-)$1	292	144	170	16.9603
d[bb[cccpppppppccc]bb22ddd	chr5:137088317-137088545(-)$1	228	34	60	15.7222
#gggggggpppppppggggggg333f	chr16:56458640-56458898(-)$1	258	57	83	17.1202
!!ffffffpppppppffffff22bb]	chr1:28865208-28865479(+)$1	271	71	97	15.3680
eeee!!bbpppppppbb333eeeee:	chr1:245026188-245026439(-)$1	251	199	225	15.6485
!ccc!!bbpppppppbb22ccccccc	chr7:104753046-104753347(-)$1	301	125	151	17.0414
!!bb[cccpppppppccc]bb333ee	chr19:52076301-52076531(+)$1	230	16	42	16.6787
gggggg[apppppppa]ggggggg]b	chr19:50167629-50167905(-)$1	276	17	43	16.9444
dd!!bb[apppppppa]bb22ddddb	chr19:3062177-3062445(-)$1	268	194	220	13.8160
gggg[cccpppppppccc22gggggg	chr19:49843218-49843488(-)$1	270	45	71	17.0741
b[a[ddddpppppppdddd]a333bb	chr6:29600363-29600664(-)$1	301	62	88	14.8898
[ccc!!bbpppppppbb22ccc]ccc	chr19:1879441-1879753(-)$1	312	163	189	17.2266
ggggggrrrrrrrrrggggggg]ddd	chr19:4038366-4038681(+)$1	315	164	190	12.4163
bb[bbcccpppppppccc>>>>>>>>	chr21:46915265-46915519(+)$1	254	8	34	14.0758
ff[bb[bbpppppppbb]bb]fffff	chr7:5463031-5463296(-)$1	265	200	226	15.1529
b[ffffffpppppppffffff]bb]d	chr7:148823200-148823467(-)$1	267	59	85	14.8869
iiiiiiirrrrrrrrriiiiiiiii]	chr17:38078026-38078341(-)$1	315	169	195	13.0637
hhhhhh[apppppppa]hhhhhhhh]	chr17:7477029-7477329(+)$1	300	229	255	14.3081
!gggggggpppppppggggggg333c	chr15:38776744-38776983(+)$1	239	24	50	17.3872
========ppppppp==========:	chr2:27249698-27249976(+)$1	278	15	41	17.0038
e!!bb[bbpppppppbb]bb22eeee	chr19:10222215-10222517(+)$1	302	121	147	15.3471
ccffffffpppppppffffff]ccc:	chr8:101963394-101963646(-)$1	252	132	158	14.7013
!gggggggpppppppggggggg]eee	chr20:35236167-35236440(+)$1	273	238	264	16.6508
"gggggggpppppppggggggg333d	chr12:56632204-56632450(-)$1	246	13	39	17.2299
b[a!!cccpppppppccc22a]bb22	chr17:43225831-43226097(+)$1	266	126	152	16.0567
eee!!cccpppppppccc4444eeee	chr1:153930820-153931104(-)$1	284	183	209	15.8978
c!!eeeeepppppppeeeee22ccc:	chr17:38077765-38078046(-)$1	281	158	184	14.0822
[ccc!!bbpppppppbb22ccc]bb5	chr17:7141375-7141629(-)$1	254	141	167	16.2235
F:a!!cccpppppppccc22abb!!b	chr1:16563366-16563711(-)$1	345	39	65	13.9659
iiiiiiirrrrrrrrriiiiiiiii]	chr17:38077992-38078226(-)$1	234	54	80	13.0637
dd####bbpppppppbb4444ddddc	chr11:61583318-61583609(-)$1	291	218	244	15.4382
"""eeeeepppppppeeeee4444bb	chr19:18547930-18548203(-)$1	273	180	206	14.6945
hhhhh[bbpppppppbbhhhhhhhha	chr6:43028063-43028334(+)$1	271	238	264	14.8583
a[ffffffpppppppffffff]a]bb	chr19:50168367-50168679(-)$1	312	104	130	15.2917
!dddd[bbpppppppbbdddd]bb]h	chr6:32938563-32938826(+)$1	263	110	136	14.6967
ffff!!bbpppppppbb22ffffff:	chr19:42788435-42788678(+)$1	243	2	28	15.5115
eeee[a[apppppppa]a]eeeee33	chr7:77166498-77166769(+)$1	271	95	121	15.7915
eeeee[bbpppppppbb]eeeee333	chr16:848303-848551(+)$1	248	85	111	15.9990
fff!!cccpppppppccc]ffffffC	chr1:38273924-38274304(+)$1	380	206	232	15.4407

#otherMatches

#Seq PSSM
CUCAGCUCUUGCGGCGAGUUGGGGUU	chr3:41241459-41241737(+)$1	278	126	152	17.1780
CUGUCUCUGUCCUCUGGAGAAUGCUG	chr16:88922543-88922825(-)$1	282	178	204	14.4361
GGGGGAGGGAAGAGGCAGCCCGGCGA	chr16:30959815-30960084(+)$1	269	172	198	15.7086
AGACGGGUGAGACAGACGCGUCCGAG	chr19:4455156-4455424(-)$1	268	234	260	15.7441
AUGACAUCGAAGUUGGAUAGCgugug	chr11:126146105-126146396(+)$1	291	55	81	14.1856
UGGGCGCUGAGUCUGAGGGGAAAGCU	chr6:33290424-33290693(-)$1	269	124	150	16.5009
UGUUUAGAGAGCUGAUUGGAACACAG	chr3:10320952-10321247(+)$1	295	13	39	17.5351
GCUGUAGUGGGUUUAGCAGGGCUGGG	chr22:20862367-20862698(+)$1	331	3	29	16.0364
GAGGGUGCAGGCUUGGGACCCUCUAU	chr12:64798468-64798740(+)$1	272	222	248	16.9322
ACCGAGUCGGGAAGAGGCGUGGGAGC	chr12:51476761-51477097(-)$1	336	152	178	16.8830
AAGGCAGGGCAUCUACCUUCCUCCCC	chr10:102761244-102761504(+)$1	260	208	234	16.9609
UUGUUGUUGCUGUUGGACUAAAUAGC	chr1:47695064-47695313(-)$1	249	23	49	16.8991
UGGCCUGCGCAGCGAGCAGGCGUGUG	chr20:32441342-32441603(+)$1	261	61	87	15.8937
GCCUCGGGAACAGGACCUGAGGAGGC	chr9:123630782-123631065(-)$1	283	39	65	16.4226
UCACCCCCUUAUGUCGGGGGUGGCCU	chr17:7477129-7477404(+)$1	275	219	245	17.6180
CCUGGCCCUUCUGAUGGAAGCUGGGC	chr11:60658330-60658663(-)$1	333	28	54	15.9506
CGGCUGAGAGGAAGAGUGGGCCGGCA	chr8:101964422-101964724(-)$1	302	53	79	12.4937
CCGCGGUUGCAACGGGAUCCCGGGCG	chr4:123747839-123748096(+)$1	257	168	194	15.4117
GAGGGAGGGAGUGAACUUGCUGAUUC	chr5:137088347-137088567(-)$1	220	56	82	15.7222
CGCCGGGUAAGGACGGCGCGGCGCGG	chr8:87354964-87355252(+)$1	288	189	215	17.9404
GCCUGUCGGUCCGUGCGGCAGGGACA	chr2:64068029-64068392(+)$1	363	42	68	15.7921
GCUGGGCUUCCACAUAGACCCAGCCG	chr12:123997754-123998009(-)$1	255	7	33	15.7065
GAGAGAgugugugugugagugugugu	chr19:42398119-42398386(+)$1	267	69	95	12.8859
ACUUGCUAAAAAUUCUGGUAAGUAUG	chr14:70238175-70238423(+)$1	248	69	95	17.6180
gcccgggcUCCGGCUGUCGGGGAAGC	chr4:83931803-83932095(-)$1	292	144	170	16.9603
GAGGGAGGGAGUGAACUUGCUGAUUC	chr5:137088317-137088545(-)$1	228	34	60	15.7222
GCGCUGCUGAGGGAGAGUGGUGAGGC	chr16:56458640-56458898(-)$1	258	57	83	17.1202
GAGGGUUUUAUAAACAAACUUAACAG	chr1:28865208-28865479(+)$1	271	71	97	15.3680
AGACUGGCAAAAUUAGUAAUGUCUUU	chr1:245026188-245026439(-)$1	251	199	225	15.6485
AGCAGUUUGAGAAUGAAUAUGCGACC	chr7:104753046-104753347(-)$1	301	125	151	17.0414
cacagugacuucaccucagugcccuc	chr19:52076301-52076531(+)$1	230	16	42	16.6787
GCUGGGCGGAAAGGACUCCUAGUGGG	chr19:50167629-50167905(-)$1	276	17	43	16.9444
ccgagccggggcgcacagccggggcg	chr19:3062177-3062445(-)$1	268	194	220	13.8160
ACCCGGGCGAGAAAGGUCAGGGGUGG	chr19:49843218-49843488(-)$1	270	45	71	17.0741
CAGGGCUCGGAGAGGGGGCGCGCGGC	chr6:29600363-29600664(-)$1	301	62	88	14.8898
GUCUGUGCACGUGUGGCUGGGAGCCC	chr19:1879441-1879753(-)$1	312	163	189	17.2266
AAGUGCAAUAAUUUGGUAUUUUGAAG	chr19:4038366-4038681(+)$1	315	164	190	12.4163
UCGCCCCGGGAUGAACGGAUUGAAAG	chr21:46915265-46915519(+)$1	254	8	34	14.0758
GGAGCCGUGAACCCAGCCGCGCCAGG	chr7:5463031-5463296(-)$1	265	200	226	15.1529
CCGGCUCUGCCUUUGGGGGCCAGCAG	chr7:148823200-148823467(-)$1	267	59	85	14.8869
UGGUUCCAGAGGUGAGGGGGCCAGGG	chr17:38078026-38078341(-)$1	315	169	195	13.0637
UGGGUCGGGCCCACGUGGACCCGGCG	chr17:7477029-7477329(+)$1	300	229	255	14.3081
GCUAUGGUGGAAGAGGCUAUGGAGAU	chr15:38776744-38776983(+)$1	239	24	50	17.3872
UUUUGGCUUCUCAGUAGCUAAGGGGA	chr2:27249698-27249976(+)$1	278	15	41	17.0038
ugacugggggaggggcuggggAACUG	chr19:10222215-10222517(+)$1	302	121	147	15.3471
GCCUGGCCGAGAGCGGGCCGGAGCCC	chr8:101963394-101963646(-)$1	252	132	158	14.7013
CAGGCAGGUUACCUUCCUGCCUUCCU	chr20:35236167-35236440(+)$1	273	238	264	16.6508
CUCCAGGCCACAGAAGCCUGGGAAGG	chr12:56632204-56632450(-)$1	246	13	39	17.2299
gagaaCUGAGCAGAGCAGAGCAUCGA	chr17:43225831-43226097(+)$1	266	126	152	16.0567
AUCCGCGCAAAUUUAGUGAGAAGAUU	chr1:153930820-153931104(-)$1	284	183	209	15.8978
CAGGUGGGGAAAAGGCCCGUGAGUCA	chr17:38077765-38078046(-)$1	281	158	184	14.0822
GCUCGAGUAGAAGGGGCCGGAGGGCG	chr17:7141375-7141629(-)$1	254	141	167	16.2235
CAGCACGCGCAGAAGGCGGACGCAGG	chr1:16563366-16563711(-)$1	345	39	65	13.9659
UGGUUCCAGAGGUGAGGGGGCCAGGG	chr17:38077992-38078226(-)$1	234	54	80	13.0637
AGGGAUUGGGAAUGGCAUACACUUAG	chr11:61583318-61583609(-)$1	291	218	244	15.4382
AAAUGCCCGAAAGUGGGGCGGGGCUU	chr19:18547930-18548203(-)$1	273	180	206	14.6945
CUGGCCUGAGUGCCACAGCCAGGGCC	chr6:43028063-43028334(+)$1	271	238	264	14.8583
GGGGAAUUGAAUGGAAGUUCUGUGUU	chr19:50168367-50168679(-)$1	312	104	130	15.2917
gggCUAGUCUGAGCCGCAGCCGCCGC	chr6:32938563-32938826(+)$1	263	110	136	14.6967
ggggaagggagggggcCGCCCCCGCG	chr19:42788435-42788678(+)$1	243	2	28	15.5115
CUGGGGGUUGGGGUUGGCGCUAGCGC	chr7:77166498-77166769(+)$1	271	95	121	15.7915
guggggcugggaguggggcucacagg	chr16:848303-848551(+)$1	248	85	111	15.9990
GGCGGGAGGAAGGGGCUUGGCCCCGC	chr1:38273924-38274304(+)$1	380	206	232	15.4407

#DB
((((((((.......)))))))))..	chr3:41241459-41241737(+)$1	1	126	152	17.1780
(..(((((.......)))))..))).	chr16:88922543-88922825(-)$1	1	178	204	14.4361
(.(((..(.......)..)))..)))	chr16:30959815-30960084(+)$1	1	172	198	15.7086
.((((.((.......)).)))))...	chr19:4455156-4455424(-)$1	1	234	260	15.7441
(((..(((.......)))..)))...	chr11:126146105-126146396(+)$1	1	55	81	14.1856
(...(.((.......)).)...))))	chr6:33290424-33290693(-)$1	1	124	150	16.5009
(((((.((.......)).))))))).	chr3:10320952-10321247(+)$1	1	13	39	17.5351
(((.(.((.......))).))))))(	chr22:20862367-20862698(+)$1	1	3	29	16.0364
((((((.(.......).))))))).)	chr12:64798468-64798740(+)$1	1	222	248	16.9322
.(((.(((.......))).)))...)	chr12:51476761-51477097(-)$1	1	152	178	16.8830
.(((.(((.......))).))).)))	chr10:102761244-102761504(+)$1	1	208	234	16.9609
((((((((.......)))..))))))	chr1:47695064-47695313(-)$1	1	23	49	16.8991
..((((((.......))))))...))	chr20:32441342-32441603(+)$1	1	61	87	15.8937
.(((((((.......)))))))..))	chr9:123630782-123631065(-)$1	1	39	65	16.4226
((((((((.......)))))))))))	chr17:7477129-7477404(+)$1	1	219	245	17.6180
((.(((((.......))..)))))))	chr11:60658330-60658663(-)$1	1	28	54	15.9506
(((((.(.........).))))))).	chr8:101964422-101964724(-)$1	1	53	79	12.4937
(((.((((.......)))).))))))	chr4:123747839-123748096(+)$1	1	168	194	15.4117
(.((.(((.......))).))..)))	chr5:137088347-137088567(-)$1	1	56	82	15.7222
(((((.((.......)).))))))))	chr8:87354964-87355252(+)$1	1	189	215	17.9404
.(((((((.......)))))))((((	chr2:64068029-64068392(+)$1	1	42	68	15.7921
((((((((.......)).)))))).)	chr12:123997754-123998009(-)$1	1	7	33	15.7065
.(.(.(.(.........).).).).)	chr19:42398119-42398386(+)$1	1	69	95	12.8859
((((((((.......)))))))))))	chr14:70238175-70238423(+)$1	1	69	95	17.6180
.(((.(((.......))).)))..))	chr4:83931803-83932095(-)$1	1	144	170	16.9603
(.((.(((.......))).))..)))	chr5:137088317-137088545(-)$1	1	34	60	15.7222
.(((((((.......)))))))...)	chr16:56458640-56458898(-)$1	1	57	83	17.1202
..((((((.......))))))..)).	chr1:28865208-28865479(+)$1	1	71	97	15.3680
((((..((.......))...))))).	chr1:245026188-245026439(-)$1	1	199	225	15.6485
.(((..((.......))..)))))))	chr7:104753046-104753347(-)$1	1	125	151	17.0414
..((.(((.......))).))...))	chr19:52076301-52076531(+)$1	1	16	42	16.6787
((((((.(.......).))))))).)	chr19:50167629-50167905(-)$1	1	17	43	16.9444
((..((.(.......).))..)))))	chr19:3062177-3062445(-)$1	1	194	220	13.8160
((((.(((.......)))..))))))	chr19:49843218-49843488(-)$1	1	45	71	17.0741
(.(.((((.......)))).)...))	chr6:29600363-29600664(-)$1	1	62	88	14.8898
.(((..((.......))..))).)))	chr19:1879441-1879753(-)$1	1	163	189	17.2266
((((((.........))))))).)))	chr19:4038366-4038681(+)$1	1	164	190	12.4163
((.(((((.......)))........	chr21:46915265-46915519(+)$1	1	8	34	14.0758
((.((.((.......)).)).)))))	chr7:5463031-5463296(-)$1	1	200	226	15.1529
(.((((((.......)))))).)).)	chr7:148823200-148823467(-)$1	1	59	85	14.8869
(((((((.........))))))))).	chr17:38078026-38078341(-)$1	1	169	195	13.0637
((((((.(.......).)))))))).	chr17:7477029-7477329(+)$1	1	229	255	14.3081
.(((((((.......)))))))...)	chr15:38776744-38776983(+)$1	1	24	50	17.3872
((((((((.......)))))))))).	chr2:27249698-27249976(+)$1	1	15	41	17.0038
(..((.((.......)).))..))))	chr19:10222215-10222517(+)$1	1	121	147	15.3471
((((((((.......)))))).))).	chr8:101963394-101963646(-)$1	1	132	158	14.7013
.(((((((.......))))))).)))	chr20:35236167-35236440(+)$1	1	238	264	16.6508
.(((((((.......)))))))...)	chr12:56632204-56632450(-)$1	1	13	39	17.2299
(.(..(((.......)))..).))..	chr17:43225831-43226097(+)$1	1	126	152	16.0567
(((..(((.......)))....))))	chr1:153930820-153931104(-)$1	1	183	209	15.8978
(..(((((.......)))))..))).	chr17:38077765-38078046(-)$1	1	158	184	14.0822
.(((..((.......))..))).)).	chr17:7141375-7141629(-)$1	1	141	167	16.2235
(.(..(((.......)))..)((..(	chr1:16563366-16563711(-)$1	1	39	65	13.9659
(((((((.........))))))))).	chr17:38077992-38078226(-)$1	1	54	80	13.0637
((....((.......))....)))))	chr11:61583318-61583609(-)$1	1	218	244	15.4382
...(((((.......)))))....))	chr19:18547930-18548203(-)$1	1	180	206	14.6945
(((((.((.......)))))))))))	chr6:43028063-43028334(+)$1	1	238	264	14.8583
(.((((((.......)))))).).))	chr19:50168367-50168679(-)$1	1	104	130	15.2917
.((((.((.......)))))).)).)	chr6:32938563-32938826(+)$1	1	110	136	14.6967
((((..((.......))..)))))).	chr19:42788435-42788678(+)$1	1	2	28	15.5115
((((.(.(.......).).)))))..	chr7:77166498-77166769(+)$1	1	95	121	15.7915
(((((.((.......)).)))))...	chr16:848303-848551(+)$1	1	85	111	15.9990
(((..(((.......))).)))))))	chr1:38273924-38274304(+)$1	1	206	232	15.4407

#PSSM
g : 0.11	! : 0.11	d : 0.09	f : 0.09	[ : 0.07	= : 0.07	e : 0.07	c : 0.06	b : 0.06	i : 0.04	" : 0.04	# : 0.03	h : 0.03	& : 0.01	: : 0.01	F : 0.01	a : 0.01	
g : 0.20	c : 0.12	[ : 0.11	f : 0.09	! : 0.07	= : 0.07	d : 0.06	e : 0.06	i : 0.04	" : 0.04	h : 0.03	a : 0.01	b : 0.01	: : 0.01	
g : 0.20	f : 0.14	c : 0.12	= : 0.07	! : 0.06	[ : 0.06	e : 0.06	i : 0.04	b : 0.04	a : 0.04	d : 0.03	" : 0.03	h : 0.03	# : 0.01	
g : 0.20	c : 0.12	f : 0.11	e : 0.09	! : 0.09	b : 0.09	= : 0.06	i : 0.04	[ : 0.04	d : 0.03	h : 0.03	" : 0.01	a : 0.01	# : 0.01	
g : 0.19	! : 0.15	[ : 0.14	f : 0.09	e : 0.06	d : 0.06	= : 0.06	b : 0.06	i : 0.04	c : 0.03	a : 0.03	h : 0.03	# : 0.01	
c : 0.23	[ : 0.17	g : 0.14	! : 0.09	f : 0.09	i : 0.04	e : 0.04	= : 0.04	d : 0.03	a : 0.03	b : 0.01	h : 0.01	# : 0.01	
b : 0.28	c : 0.22	[ : 0.09	g : 0.09	f : 0.07	i : 0.04	e : 0.04	= : 0.04	d : 0.03	! : 0.01	a : 0.01	r : 0.01	
b : 0.28	c : 0.22	a : 0.11	g : 0.09	f : 0.07	r : 0.06	e : 0.04	= : 0.04	d : 0.03	i : 0.01	
p : 0.92	r : 0.07	
p : 0.92	r : 0.07	
p : 0.92	r : 0.07	
p : 0.92	r : 0.07	
p : 0.92	r : 0.07	
p : 0.92	r : 0.07	
p : 0.92	r : 0.07	
b : 0.28	c : 0.22	g : 0.11	a : 0.09	f : 0.07	r : 0.06	e : 0.04	= : 0.04	d : 0.03	i : 0.01	
b : 0.28	c : 0.22	g : 0.11	] : 0.07	f : 0.07	i : 0.04	e : 0.04	= : 0.04	d : 0.03	2 : 0.01	a : 0.01	r : 0.01	
c : 0.22	] : 0.14	g : 0.14	2 : 0.09	f : 0.07	i : 0.04	e : 0.04	a : 0.04	= : 0.04	d : 0.04	h : 0.03	3 : 0.01	b : 0.01	4 : 0.01	
g : 0.17	2 : 0.15	] : 0.15	f : 0.09	e : 0.06	d : 0.06	= : 0.06	i : 0.04	b : 0.04	h : 0.03	4 : 0.03	c : 0.01	a : 0.01	3 : 0.01	> : 0.01	
g : 0.17	f : 0.14	c : 0.12	2 : 0.09	e : 0.07	b : 0.07	= : 0.06	i : 0.04	d : 0.03	3 : 0.03	] : 0.03	h : 0.03	4 : 0.03	a : 0.01	> : 0.01	
g : 0.20	c : 0.14	f : 0.14	= : 0.07	2 : 0.06	i : 0.04	b : 0.04	e : 0.04	a : 0.04	4 : 0.04	d : 0.03	] : 0.03	h : 0.03	3 : 0.01	> : 0.01	
g : 0.20	c : 0.12	2 : 0.11	f : 0.07	= : 0.07	] : 0.07	3 : 0.06	i : 0.04	d : 0.04	e : 0.04	h : 0.03	4 : 0.03	a : 0.01	> : 0.01	b : 0.01	
3 : 0.11	2 : 0.09	g : 0.09	f : 0.09	] : 0.09	c : 0.07	= : 0.07	e : 0.07	i : 0.06	b : 0.06	d : 0.04	a : 0.03	h : 0.03	> : 0.01	4 : 0.01	
3 : 0.14	d : 0.11	g : 0.09	f : 0.09	c : 0.07	= : 0.07	b : 0.07	e : 0.07	i : 0.06	a : 0.03	2 : 0.03	h : 0.03	: : 0.01	> : 0.01	! : 0.01	4 : 0.01	] : 0.01	
d : 0.14	3 : 0.12	] : 0.09	b : 0.09	c : 0.07	g : 0.07	f : 0.07	= : 0.07	e : 0.07	i : 0.04	h : 0.03	: : 0.01	> : 0.01	2 : 0.01	! : 0.01	
d : 0.15	: : 0.11	b : 0.11	c : 0.07	3 : 0.06	f : 0.06	= : 0.06	] : 0.06	e : 0.06	a : 0.04	g : 0.04	8 : 0.01	4 : 0.01	i : 0.01	> : 0.01	2 : 0.01	5 : 0.01	h : 0.01	C : 0.01	

#score	988.1846836807922
#seq	63
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_CDS_m2_run1.txt

#BEAR
d[bb[cccqqqqqqqqccc]bbddd	chr11:64013745-64013993(-)$1	248	124	149	16.0212
ddd!!cccqqqqqqqqccc333ddd	chr1:8922798-8923046(-)$1	248	70	95	17.7310
eeee[cccqqqqqqqqccc]eeeee	chr12:57882791-57883045(+)$1	254	145	170	16.2877
ddd[ddddqqqqqqqqdddd333dd	chr22:22041898-22042161(+)$1	263	178	203	16.0820
f[ffffffqqqqqqqqfffffffff	chr2:72707601-72707883(-)$1	282	234	259	14.4069
dccc[cccqqqqqqqqccc]ccc]d	chr5:70927863-70928148(+)$1	285	257	282	17.3117
fff!!cccqqqqqqqqccc333fff	chr7:11101552-11101840(+)$1	288	71	96	17.5401
!gggggggqqqqqqqqggggggg]d	chr2:33817007-33817367(-)$1	360	228	253	16.1767
ccc[ddddqqqqqqqqdddd]cccI	chr20:44433897-44434148(+)$1	251	178	203	14.5983
i####cccqqqqqqqqccc333iii	chr1:100732050-100732322(+)$1	272	113	138	18.3991
iiiiiiiiqqqqqqqqiiiiiiiii	chr1:177913559-177913824(-)$1	265	171	196	16.4229
ee"""cccqqqqqqqqccc4444ee	chr14:95571263-95571533(-)$1	270	178	203	17.7008
d[ccc[bbqqqqqqqqbb]ccc]dd	chr10:24802210-24802499(+)$1	289	121	146	15.8460
cc[eeeeeqqqqqqqqeeeee]ccc	chr20:37161371-37161642(+)$1	271	144	169	15.1486
!ccc!!bbqqqqqqqqbb22ccc]e	chr19:18961573-18961813(+)$1	240	13	38	16.3694
dd!!a!!aqqqqqqqqa22a22ddd	chr3:57678348-57678649(-)$1	301	19	44	15.7130
hhccc[bbqqqqqqqqbb]ccc]hh	chr12:46345294-46345557(-)$1	263	84	109	15.2253
ii"""cccqqqqqqqqccc333iii	chr2:118752864-118753164(-)$1	300	227	252	18.5288
bb[addddqqqqqqqqdddd4444a	chr1:151206844-151207088(+)$1	244	85	110	15.6400
ccc[ddddqqqqqqqqdddd333cc	chr2:11773080-11773323(+)$1	243	56	81	16.5923
!!ffffffqqqqqqqqffffff22a	chr17:8285327-8285597(-)$1	270	132	157	14.6874
bb[a"""aqqqqqqqqa333a]bb4	chr19:56658418-56658710(+)$1	292	174	199	15.8994
iiiiiiiiqqqqqqqqiiiiiiiii	chr9:135507292-135507573(-)$1	281	75	100	16.4229
ccc[ddddqqqqqqqqdddd22ccc	chr1:19215708-19215961(-)$1	253	117	142	15.8931
:gggggggqqqqqqqqggggggg:d	chr2:219110161-219110411(+)$1	250	181	206	14.0979
iiii[cccqqqqqqqqccc22iiii	chr7:98546169-98546447(+)$1	278	188	213	17.5009
c####cccqqqqqqqqccc22ccc]	chr10:104136776-104137027(+)$1	251	205	230	17.4732
""ffffffqqqqqqqqffffff22g	chr9:71831240-71831517(+)$1	277	136	161	14.6092
ccc[ddddqqqqqqqqdddd]ccc]	chr1:26137911-26138164(+)$1	253	29	54	15.8734
cc!!ddddqqqqqqqqdddd22ccc	chr6:167360043-167360325(-)$1	282	66	91	16.0514
eee:ddddqqqqqqqqdddd=====	chrX:55779825-55780107(+)$1	282	142	167	14.6145
"""bb[bbqqqqqqqqbb]bb333d	chr3:9952718-9952981(+)$1	263	74	99	15.4582
$$$$$cccqqqqqqqqccc]ggggg	chr8:145722730-145722985(+)$1	255	146	171	16.4869
iiiiiiiiqqqqqqqqiiiiiiiii	chr2:239079443-239079699(-)$1	256	96	121	16.4229
fff"""bbqqqqqqqqbb]ffffff	chr3:51969076-51969328(-)$1	252	147	172	15.3149
[gggggggqqqqqqqqgggggggcc	chr15:74483357-74483610(-)$1	253	133	158	16.0926
====bb[aqqqqqqqqabb]=====	chr3:53220585-53220867(+)$1	282	118	143	15.9893
ggggg[bbqqqqqqqqbbggggggg	chr17:7214687-7214939(+)$1	252	219	244	15.8928
d[ffffffqqqqqqqqffffff22d	chr16:88691541-88691856(+)$1	315	270	295	14.5873
dddd!!bbqqqqqqqqbb333dddd	chr6:132198187-132198438(+)$1	251	96	121	16.0140
!!ffffffqqqqqqqqffffff]bb	chrX:54021978-54022297(-)$1	319	146	171	14.5461
========qqqqqqqq=========	chr22:31484612-31484895(+)$1	283	239	264	17.0268
'gggggggqqqqqqqqggggggg==	chr17:34854885-34855150(-)$1	265	141	166	15.4888
[bb!!cccqqqqqqqqccc]bbeee	chr13:52025970-52026223(-)$1	253	85	110	16.3470
dd[cccbbqqqqqqqqbb]ccc]dd	chr8:145697837-145698094(+)$1	257	174	199	15.7399
[bba!!bbqqqqqqqqbb22a]bb]	chr14:59942449-59942723(-)$1	274	80	105	15.3520
ccc!!cccqqqqqqqqccc]ccc]c	chr12:89744672-89744915(-)$1	243	193	218	17.7019
e"""ddddqqqqqqqqddddeeeee	chr19:17273127-17273392(+)$1	265	110	135	15.3770
e[ccccccqqqqqqqqccc333ccc	chr11:65396309-65396560(+)$1	251	94	119	17.7619
eeee"""aqqqqqqqqa333eeeee	chr1:1158512-1158724(-)$1	212	82	107	15.7548
ccc!!cccqqqqqqqqccc22ccce	chr19:8045791-8046071(-)$1	280	122	147	17.5733
d$$$$$bbqqqqqqqqbb4444ddd	chr2:15735193-15735452(+)$1	259	172	197	15.7332
dddd!!bbqqqqqqqqbb333dddd	chr7:73098010-73098278(+)$1	268	42	67	16.0140
:ccc[cccqqqqqqqqcccccciii	chr5:150112795-150113084(-)$1	289	55	80	16.1116
f####cccqqqqqqqqccc4444ff	chr16:257948-258182(-)$1	234	6	31	17.5556
iii!!cccqqqqqqqqccc666666	chr12:56628641-56628917(+)$1	276	178	203	15.0790
hhheeeeeqqqqqqqqeeeee4444	chr19:13002234-13002476(+)$1	242	56	81	14.6380
ccceeeeeqqqqqqqqeeeee333c	chr16:70599052-70599264(+)$1	212	48	73	15.4724
bbccccccqqqqqqqqccc]ccc]b	chr17:40280137-40280408(-)$1	271	233	258	16.2690
[ccc[a[aqqqqqqqqa]a]ccc]e	chr10:104123047-104123296(+)$1	249	56	81	16.4884
gggaddddqqqqqqqqddddbb[ff	chr17:46051283-46051538(+)$1	255	159	184	14.4967
eee!!cccqqqqqqqqccc]eeeee	chr1:162270359-162270635(+)$1	276	108	133	16.7241
!!bb[cccqqqqqqqqccc333bb2	chr9:111664979-111665224(-)$1	245	70	95	16.8752
dd!!ddddqqqqqqqqdddd4444d	chr8:103236136-103236422(-)$1	286	86	111	16.2460
dd[eeeeeqqqqqqqqeeeee]ddd	chr12:22778381-22778661(+)$1	280	235	260	14.7020
eeee[cccqqqqqqqqccceeeeeb	chr1:1421102-1421406(+)$1	304	111	136	15.7102

#otherMatches

#Seq PSSM
CCGACACCCCAAAAUCGGUCUCGCG	chr11:64013745-64013993(-)$1	248	124	149	16.0212
AGCGCUUGGCCAAGUACAACCAGCU	chr1:8922798-8923046(-)$1	248	70	95	17.7310
GGCCUCACUGUCAUUUGUGUGGCUU	chr12:57882791-57883045(+)$1	254	145	170	16.2877
GGGUGGGCUUGUCCCUGCCCCAUCC	chr22:22041898-22042161(+)$1	263	178	203	16.0820
ACAUGCUCUUGAGAAUGAGUGUUUA	chr2:72707601-72707883(-)$1	282	234	259	14.4069
ACAGUUUAUUUGUUCUUGAUCUGCU	chr5:70927863-70928148(+)$1	285	257	282	17.3117
UCUGUGUUGCAAAAGAAGCCCAAGG	chr7:11101552-11101840(+)$1	288	71	96	17.5401
CAUGGCUACUAGAAUAUAGCUAUUA	chr2:33817007-33817367(-)$1	360	228	253	16.1767
aagcuuagaacaaacacugaucuug	chr20:44433897-44434148(+)$1	251	178	203	14.5983
AGCACGCCAGGCCUGAGGUAAAUCU	chr1:100732050-100732322(+)$1	272	113	138	18.3991
GCUGCAGGCAGCUGUAUUUGCAGCU	chr1:177913559-177913824(-)$1	265	171	196	16.4229
AAAAGAACAGAAUUAAGUUAAAAUU	chr14:95571263-95571533(-)$1	270	178	203	17.7008
CAUGAGGAAGAGAAGAUCGUCAAGA	chr10:24802210-24802499(+)$1	289	121	146	15.8460
CUUUUGAAAUUCAAAGUUUAAUAGA	chr20:37161371-37161642(+)$1	271	144	169	15.1486
CUGGCUGGUCAAGAUCCCCUCCGAG	chr19:18961573-18961813(+)$1	240	13	38	16.3694
CAGAGGACGAUGAAGAGGACGAUGG	chr3:57678348-57678649(-)$1	301	19	44	15.7130
AGGCAGUGUUUAAAUUCAGUGCAUU	chr12:46345294-46345557(-)$1	263	84	109	15.2253
AGGCUUCCAUCUACGGGGAUCGCUU	chr2:118752864-118753164(-)$1	300	227	252	18.5288
CAUGUACAACGCUCUCUGUAAGACC	chr1:151206844-151207088(+)$1	244	85	110	15.6400
UCCUGCGUGAUGUGGAACGUGGUGG	chr2:11773080-11773323(+)$1	243	56	81	16.5923
UUCAGGUGUGUAUCCCUACUUGUUC	chr17:8285327-8285597(-)$1	270	132	157	14.6874
CUGCAAGCGGGGAAGGGAGAGGGGA	chr19:56658418-56658710(+)$1	292	174	199	15.8994
UAUUCUUUUCUUUGUUAAAGGAUGU	chr9:135507292-135507573(-)$1	281	75	100	16.4229
GGGUGGGCAGAGCUCAGCCCCUCCC	chr1:19215708-19215961(-)$1	253	117	142	15.8931
AACCUUGGUUAACAUUUUAAGGUAG	chr2:219110161-219110411(+)$1	250	181	206	14.0979
GCUGUCGUGCUCUGAAAUGUUCAGU	chr7:98546169-98546447(+)$1	278	188	213	17.5009
GGAAGGGCCCAUGUGUGCCAGCCCA	chr10:104136776-104137027(+)$1	251	205	230	17.4732
CCAGUGAGUGUCCUCCCUCGCUCCG	chr9:71831240-71831517(+)$1	277	136	161	14.6092
CCAGGUCUCUGAAUGUGGACAUGGA	chr1:26137911-26138164(+)$1	253	29	54	15.8734
UCUUAUUUUCUCUUUUAAAUUUGAA	chr6:167360043-167360325(-)$1	282	66	91	16.0514
AGAUGUACUUCACACUGUACGUUCU	chrX:55779825-55780107(+)$1	282	142	167	14.6145
UCUCCUCUCCUCCCACAGUGGUAUG	chr3:9952718-9952981(+)$1	263	74	99	15.4582
CCACUCCCUGCUACCUGGGUGCCGU	chr8:145722730-145722985(+)$1	255	146	171	16.4869
UCAUCUUGUCCUGUCUCGAGGUGAG	chr2:239079443-239079699(-)$1	256	96	121	16.4229
GCUUCUGCUCCUGAGUGCUGGCUGU	chr3:51969076-51969328(-)$1	252	147	172	15.3149
ACAGGGGACGUUACCCUCCCUUGCA	chr15:74483357-74483610(-)$1	253	133	158	16.0926
CGUGCCACGUACGUAAGGGCCAUGG	chr3:53220585-53220867(+)$1	282	118	143	15.9893
UGUCUGCCAUGACAGAGGAGGCAGC	chr17:7214687-7214939(+)$1	252	219	244	15.8928
GGAAGGCUGCGGUUGAAGCUUUGAC	chr16:88691541-88691856(+)$1	315	270	295	14.5873
UGCUCAUGUAACCCUUCGGUAAGUA	chr6:132198187-132198438(+)$1	251	96	121	16.0140
UGGCCAGGGAGAUCCGCCUGGUGGA	chrX:54021978-54022297(-)$1	319	146	171	14.5461
UUCCAGCUGCCACCUUGGCUGGGAG	chr22:31484612-31484895(+)$1	283	239	264	17.0268
CUUAGCCAUUCGUUCCUGGUUAACU	chr17:34854885-34855150(-)$1	265	141	166	15.4888
CGAAGAGCCGCCCUAUGCUAUCAAG	chr13:52025970-52026223(-)$1	253	85	110	16.3470
AGCGCAGCUCCCGCUCGCAUGCCCU	chr8:145697837-145698094(+)$1	257	174	199	15.7399
AUGAGAGCCUUCAAAAGCAGUGCAA	chr14:59942449-59942723(-)$1	274	80	105	15.3520
CCGUUGCCAGUGCUGGGGCUCGGGG	chr12:89744672-89744915(-)$1	243	193	218	17.7019
GCACUCCUCAACAAGAAGGACGUGG	chr19:17273127-17273392(+)$1	265	110	135	15.3770
GGGAGCGCGACUACAAGUGAGUCUC	chr11:65396309-65396560(+)$1	251	94	119	17.7619
CUCAAAGUGGAUGAGGAAAGUGAGU	chr1:1158512-1158724(-)$1	212	82	107	15.7548
CCACCGCAUCCAUUCCUGCCCUGGG	chr19:8045791-8046071(-)$1	280	122	147	17.5733
AUUUAAACAGUUGUUAGUGAUUUUA	chr2:15735193-15735452(+)$1	259	172	197	15.7332
GCGUCUGAAUUAUUCCUCUACAUGC	chr7:73098010-73098278(+)$1	268	42	67	16.0140
AUUGAUUGAAUAUUACCAGCAGCUU	chr5:150112795-150113084(-)$1	289	55	80	16.1116
CUUGGAGUCCUUUAUUGCUGAAUGU	chr16:257948-258182(-)$1	234	6	31	17.5556
CCCAUGCCAAAAAGGAGGCUCACUG	chr12:56628641-56628917(+)$1	276	178	203	15.0790
GUGCUUGCAGAGAAAGGCGGGAGAA	chr19:13002234-13002476(+)$1	242	56	81	14.6380
UCCGAGUGAUGAAUCCCAUUCAAGG	chr16:70599052-70599264(+)$1	212	48	73	15.4724
AGGGAAGCUUCCAUCUGCUGUCCUC	chr17:40280137-40280408(-)$1	271	233	258	16.2690
ACAUGGGAAAUCAGGAUGCAGUGAU	chr10:104123047-104123296(+)$1	249	56	81	16.4884
AUCCGAGGAGUCAUAGCCUCUGUGG	chr17:46051283-46051538(+)$1	255	159	184	14.4967
AUGCUGGUGAUGCAGGACCCCAUCU	chr1:162270359-162270635(+)$1	276	108	133	16.7241
UGCACCCAGACCGAAUUGGCCAUGA	chr9:111664979-111665224(-)$1	245	70	95	16.8752
CCUAUGUUAAGAAAAAAGCAGAUUG	chr8:103236136-103236422(-)$1	286	86	111	16.2460
ACCUAGGGCAACAUCUCCUUAAGUC	chr12:22778381-22778661(+)$1	280	235	260	14.7020
UUAGUGUAAGUCGGUGUGCCUGGGA	chr1:1421102-1421406(+)$1	304	111	136	15.7102

#DB
(.((.(((........))).)))))	chr11:64013745-64013993(-)$1	1	124	149	16.0212
(((..(((........)))...)))	chr1:8922798-8923046(-)$1	1	70	95	17.7310
((((.(((........))).)))))	chr12:57882791-57883045(+)$1	1	145	170	16.2877
(((.((((........))))...))	chr22:22041898-22042161(+)$1	1	178	203	16.0820
(.((((((........)))))))))	chr2:72707601-72707883(-)$1	1	234	259	14.4069
((((.(((........))).))).)	chr5:70927863-70928148(+)$1	1	257	282	17.3117
(((..(((........)))...)))	chr7:11101552-11101840(+)$1	1	71	96	17.5401
.(((((((........))))))).)	chr2:33817007-33817367(-)$1	1	228	253	16.1767
(((.((((........)))).))))	chr20:44433897-44434148(+)$1	1	178	203	14.5983
(....(((........)))...)))	chr1:100732050-100732322(+)$1	1	113	138	18.3991
((((((((........)))))))))	chr1:177913559-177913824(-)$1	1	171	196	16.4229
((...(((........)))....))	chr14:95571263-95571533(-)$1	1	178	203	17.7008
(.(((.((........)).))).))	chr10:24802210-24802499(+)$1	1	121	146	15.8460
((.(((((........))))).)))	chr20:37161371-37161642(+)$1	1	144	169	15.1486
.(((..((........))..))).)	chr19:18961573-18961813(+)$1	1	13	38	16.3694
((..(..(........)..)..)))	chr3:57678348-57678649(-)$1	1	19	44	15.7130
(((((.((........)).))).))	chr12:46345294-46345557(-)$1	1	84	109	15.2253
((...(((........)))...)))	chr2:118752864-118753164(-)$1	1	227	252	18.5288
((.(((((........))))....)	chr1:151206844-151207088(+)$1	1	85	110	15.6400
(((.((((........))))...))	chr2:11773080-11773323(+)$1	1	56	81	16.5923
..((((((........))))))..)	chr17:8285327-8285597(-)$1	1	132	157	14.6874
((.(...(........)...).)).	chr19:56658418-56658710(+)$1	1	174	199	15.8994
((((((((........)))))))))	chr9:135507292-135507573(-)$1	1	75	100	16.4229
(((.((((........))))..)))	chr1:19215708-19215961(-)$1	1	117	142	15.8931
.(((((((........))))))).(	chr2:219110161-219110411(+)$1	1	181	206	14.0979
((((.(((........)))..))))	chr7:98546169-98546447(+)$1	1	188	213	17.5009
(....(((........)))..))).	chr10:104136776-104137027(+)$1	1	205	230	17.4732
..((((((........))))))..)	chr9:71831240-71831517(+)$1	1	136	161	14.6092
(((.((((........)))).))).	chr1:26137911-26138164(+)$1	1	29	54	15.8734
((..((((........))))..)))	chr6:167360043-167360325(-)$1	1	66	91	16.0514
))).((((........))))(((((	chrX:55779825-55780107(+)$1	1	142	167	14.6145
...((.((........)).))...)	chr3:9952718-9952981(+)$1	1	74	99	15.4582
.....(((........))).)))))	chr8:145722730-145722985(+)$1	1	146	171	16.4869
((((((((........)))))))))	chr2:239079443-239079699(-)$1	1	96	121	16.4229
(((...((........)).))))))	chr3:51969076-51969328(-)$1	1	147	172	15.3149
.(((((((........)))))))))	chr15:74483357-74483610(-)$1	1	133	158	16.0926
((((((.(........))).)))))	chr3:53220585-53220867(+)$1	1	118	143	15.9893
(((((.((........)))))))))	chr17:7214687-7214939(+)$1	1	219	244	15.8928
(.((((((........))))))..)	chr16:88691541-88691856(+)$1	1	270	295	14.5873
((((..((........))...))))	chr6:132198187-132198438(+)$1	1	96	121	16.0140
..((((((........)))))).))	chrX:54021978-54022297(-)$1	1	146	171	14.5461
((((((((........)))))))))	chr22:31484612-31484895(+)$1	1	239	264	17.0268
.(((((((........)))))))))	chr17:34854885-34855150(-)$1	1	141	166	15.4888
.((..(((........))).)))))	chr13:52025970-52026223(-)$1	1	85	110	16.3470
((.(((((........)).))).))	chr8:145697837-145698094(+)$1	1	174	199	15.7399
.(((..((........))..).)).	chr14:59942449-59942723(-)$1	1	80	105	15.3520
(((..(((........))).))).)	chr12:89744672-89744915(-)$1	1	193	218	17.7019
(...((((........)))))))))	chr19:17273127-17273392(+)$1	1	110	135	15.3770
(.((((((........)))...)))	chr11:65396309-65396560(+)$1	1	94	119	17.7619
((((...(........)...)))))	chr1:1158512-1158724(-)$1	1	82	107	15.7548
(((..(((........)))..)))(	chr19:8045791-8046071(-)$1	1	122	147	17.5733
(.....((........))....)))	chr2:15735193-15735452(+)$1	1	172	197	15.7332
((((..((........))...))))	chr7:73098010-73098278(+)$1	1	42	67	16.0140
.(((.(((........))))))(((	chr5:150112795-150113084(-)$1	1	55	80	16.1116
(....(((........)))....))	chr16:257948-258182(-)$1	1	6	31	17.5556
(((..(((........)))......	chr12:56628641-56628917(+)$1	1	178	203	15.0790
((((((((........)))))....	chr19:13002234-13002476(+)$1	1	56	81	14.6380
((((((((........)))))...)	chr16:70599052-70599264(+)$1	1	48	73	15.4724
((((((((........))).))).)	chr17:40280137-40280408(-)$1	1	233	258	16.2690
.(((.(.(........).).))).)	chr10:104123047-104123296(+)$1	1	56	81	16.4884
))))((((........))))((.((	chr17:46051283-46051538(+)$1	1	159	184	14.4967
(((..(((........))).)))))	chr1:162270359-162270635(+)$1	1	108	133	16.7241
..((.(((........)))...)).	chr9:111664979-111665224(-)$1	1	70	95	16.8752
((..((((........))))....)	chr8:103236136-103236422(-)$1	1	86	111	16.2460
((.(((((........))))).)))	chr12:22778381-22778661(+)$1	1	235	260	14.7020
((((.(((........)))))))))	chr1:1421102-1421406(+)$1	1	111	136	15.7102

#PSSM
d : 0.19	c : 0.15	e : 0.12	i : 0.10	! : 0.07	f : 0.06	[ : 0.06	b : 0.04	h : 0.03	: : 0.03	" : 0.03	= : 0.03	g : 0.03	$ : 0.01	' : 0.01	
c : 0.19	d : 0.12	e : 0.09	g : 0.09	i : 0.09	[ : 0.07	b : 0.07	# : 0.04	! : 0.04	" : 0.04	f : 0.03	h : 0.03	$ : 0.03	= : 0.03	
c : 0.22	f : 0.10	g : 0.09	e : 0.07	i : 0.07	[ : 0.07	b : 0.06	d : 0.06	" : 0.06	# : 0.04	! : 0.04	$ : 0.03	= : 0.03	h : 0.01	
! : 0.15	c : 0.13	e : 0.10	[ : 0.07	f : 0.07	g : 0.07	i : 0.06	" : 0.06	a : 0.06	b : 0.04	# : 0.04	$ : 0.03	= : 0.03	d : 0.03	: : 0.01	
! : 0.16	d : 0.16	[ : 0.12	f : 0.07	g : 0.07	" : 0.07	c : 0.07	e : 0.06	# : 0.04	i : 0.04	b : 0.03	$ : 0.03	a : 0.01	= : 0.01	
c : 0.34	d : 0.16	f : 0.07	! : 0.07	g : 0.06	[ : 0.06	e : 0.06	i : 0.04	" : 0.04	b : 0.01	= : 0.01	$ : 0.01	a : 0.01	
c : 0.33	d : 0.16	b : 0.16	f : 0.07	g : 0.06	e : 0.06	i : 0.04	" : 0.03	[ : 0.03	! : 0.01	= : 0.01	
c : 0.33	d : 0.16	b : 0.16	f : 0.07	a : 0.07	g : 0.06	e : 0.06	i : 0.04	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.33	d : 0.16	b : 0.16	f : 0.07	a : 0.07	g : 0.06	e : 0.06	i : 0.04	= : 0.01	
c : 0.33	b : 0.18	d : 0.16	f : 0.07	g : 0.06	e : 0.06	i : 0.04	3 : 0.03	2 : 0.01	= : 0.01	] : 0.01	
c : 0.33	d : 0.16	f : 0.07	g : 0.07	] : 0.07	e : 0.06	3 : 0.06	i : 0.04	2 : 0.04	b : 0.01	= : 0.01	4 : 0.01	a : 0.01	
d : 0.16	] : 0.15	3 : 0.15	f : 0.09	g : 0.07	e : 0.07	2 : 0.07	c : 0.06	i : 0.04	4 : 0.04	a : 0.01	b : 0.01	= : 0.01	6 : 0.01	
3 : 0.15	e : 0.13	c : 0.13	f : 0.09	g : 0.09	2 : 0.09	4 : 0.07	b : 0.06	i : 0.04	= : 0.04	] : 0.03	a : 0.03	6 : 0.01	
c : 0.19	3 : 0.15	f : 0.09	g : 0.09	4 : 0.09	e : 0.07	i : 0.06	] : 0.06	b : 0.04	2 : 0.04	= : 0.04	d : 0.03	6 : 0.01	
c : 0.19	d : 0.10	i : 0.10	e : 0.09	g : 0.09	4 : 0.07	3 : 0.06	] : 0.06	f : 0.04	2 : 0.04	b : 0.04	= : 0.04	6 : 0.01	[ : 0.01	
d : 0.15	c : 0.15	e : 0.10	i : 0.10	] : 0.09	f : 0.07	b : 0.06	= : 0.06	4 : 0.04	2 : 0.04	3 : 0.03	g : 0.03	h : 0.01	: : 0.01	6 : 0.01	
d : 0.24	e : 0.13	c : 0.12	i : 0.10	f : 0.07	= : 0.06	] : 0.04	g : 0.04	b : 0.04	a : 0.03	4 : 0.03	I : 0.01	h : 0.01	6 : 0.01	2 : 0.01	

#score	1059.912227700189
#seq	66
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_transcript_m3_run1.txt

#BEAR
eeeeccc!!ddddmmmmdddd22ccc]eee	chr8:145000399-145000673(-)$1	274	76	106	10.5999
bb!!ffffff[bbmmmmbb]ffffff22bb	chr7:1133731-1133982(-)$1	251	13	43	10.7776
gg"""bb[bb[bbmmmmbb]bbbb333ggg	chr7:1006198-1006484(-)$1	286	228	258	11.7276
:============lll============FF	chr16:89033284-89033511(-)$1	227	181	211	10.7333
::ggggggg!!bbmmmmbb22ggggggggg	chr2:3326180-3326411(-)$1	231	138	168	10.3566
ggggggccc[cccmmmmccc333ccc]ggg	chr1:2210948-2211228(+)$1	280	127	157	12.9117
b============nnnnn============	chr16:89466023-89466271(-)$1	248	12	42	11.1565
!!a!!ccc[ddddmmmmdddd22ccc22a2	chr20:25846382-25846627(-)$1	245	109	139	11.7267
eee[a[gggggggnnnnnggggggg]aeee	chr19:5077952-5078239(+)$1	287	29	59	9.7118
::cccccc!!cccmmmmccc333ccc]ccc	chr7:23454363-23454614(-)$1	251	0	30	11.0878
eeeee!!ffffffmmmmffffff]eeeee3	chr19:2270127-2270364(+)$1	237	101	131	10.4683
ccc####ffffffmmmmffffff22ccc]b	chr16:87736083-87736342(-)$1	259	184	214	11.0294
eeeee[gggggggmmmmggggggg333eee	chr2:3323220-3323479(-)$1	259	150	180	13.1983
h!!bb[eeeee[ammmmaeeeee]bb4444	chr12:133129420-133129668(+)$1	248	32	62	11.0824
[ccc!!gggggggmmmmggggggg]ccccc	chr8:94746820-94747051(-)$1	231	177	207	13.1031
gggg!!gggggggmmmmggggggggggggg	chr7:1157831-1158082(-)$1	251	217	247	13.0809
eeeee"""eeeeemmmmeeeee333eeeee	chr1:2214012-2214286(+)$1	274	242	272	10.4024
hh[bb[ggggggglllggggggg4444bb]	chr16:88995773-88996001(-)$1	228	25	55	9.9936
iiiii[gggggggmmmmggggggg4444ii	chr16:1366318-1366598(+)$1	280	198	228	14.1229
####agggggggnnnnnggggggg]a4444	chr17:78778616-78778877(+)$1	261	37	67	11.1037
=============mmmm=============	chr8:141108631-141108878(-)$1	247	55	85	14.5959
dd####bb[ddddmmmmdddd]bb333ddd	chr19:5080808-5081046(+)$1	238	52	82	10.7475
!!ccc$$$$$cccmmmmccc4444ccc22d	chr16:89185577-89185814(+)$1	237	170	200	11.5237
cc####gggggggmmmmggggggg]ccc]g	chr12:133133504-133133779(+)$1	275	60	90	13.6394
:bb[accc!!cccmmmmccc22ccc]a]bb	chr16:89017966-89018230(-)$1	264	215	245	11.0385
gg[ffffff[cccmmmmcccffffff333g	chr22:49826759-49827001(-)$1	242	6	36	12.1816
gggggbb!!a[bbmmmmbb]a22bb22ggg	chr10:133763810-133764059(+)$1	249	147	177	11.3848
ccc####ccc[bbnnnnnbbccc333ccc]	chr4:847236-847517(-)$1	281	230	260	9.4194
ii!!ccc[bb[bbmmmmbbbb22ccc4444	chr21:9922571-9922858(-)$1	287	18	48	12.6957
d!!a"""ccc!!ammmma22ccc]a22ddd	chr11:71726054-71726329(-)$1	275	232	262	11.9303
b[ffffff[a[bbmmmmbb]a]ffffff]b	chr8:144672189-144672425(-)$1	236	95	125	10.6994
iiiiiiii[ddddmmmmdddd]iiiiiiii	chr1:2210417-2210701(+)$1	284	64	94	11.8545
[ccc[cccbbcccmmmmccc]bb]ccc]cc	chr19:55558594-55558900(+)$1	306	138	168	11.4403
$$bb!!gggggggmmmmgggggggbb4444	chr11:3415418-3415652(+)$1	234	184	214	12.8956
cc[ccc[ccc[bbmmmmbb]ccc]ccc]cc	chr1:2211279-2211535(+)$1	256	58	88	12.3870
e####bb[bb[bbmmmmbb]bb]bb333ee	chr7:23454092-23454342(-)$1	250	50	80	11.8657
!===========ammmma]===========	chr7:2080517-2080789(-)$1	272	128	158	14.5016
b"""iiiiiiiiimmmmiiiiiiiii22bb	chr16:81550197-81550491(+)$1	294	216	246	13.5644
ccc[iiiiiiiiimmmmiiiiiiiii333c	chr17:27023909-27024175(+)$1	266	234	264	14.3187
eeee"""ffffffmmmmffffff4444eee	chr22:49858059-49858340(-)$1	281	198	228	11.4227
ee!!ccc!!ddddmmmmdddd4444ccc22	chr22:49934539-49934777(-)$1	238	27	57	11.2172
$$$$ccc"""bbammmma]bb]ccc4444e	chr16:89008449-89008699(-)$1	250	48	78	12.2445
####ggggggg[ammmma]ggggggg4444	chr1:2171660-2171932(+)$1	272	110	140	14.2953
eeee[ccc"""bbmmmmbb]ccceeeee]a	chr9:133760237-133760484(+)$1	247	59	89	11.2964
f"""ccc[eeeeemmmmeeeee22ccc333	chr8:608308-608606(-)$1	298	162	192	11.7721
ddd"""gggggggmmmmgggggggdddd66	chr18:75690127-75690390(-)$1	263	165	195	11.5869
b[eeeee"""cccmmmmccc22eeeee]bb	chr1:246137200-246137466(-)$1	266	99	129	10.5390
gggggdddd[cccmmmmccc22dddd333g	chr22:19875718-19875986(-)$1	268	207	237	11.4252
=========[abbmmmmbb]a]========	chr11:62300265-62300547(-)$1	282	65	95	13.9435
bb[aiiiiiiiiillliiiiiiiii]a]bb	chr7:1153166-1153409(-)$1	243	212	242	10.8540
eeeee[a[a[cccmmmmccca]a]eeeee]	chr9:139565251-139565507(+)$1	256	101	131	11.7708
eeeee!!ccccccmmmmccc]ccc22eeee	chr21:9927186-9927448(-)$1	262	5	35	11.3217
e!!ggggggg[bblllbb]ggggggg4444	chr20:62551434-62551683(+)$1	249	117	147	11.6243
$$$$iiiiiiiiimmmmiiiiiiiii5555	chr16:89347152-89347422(-)$1	270	165	195	11.0548
!!ccc[gggggggmmmmgggggggccc]ee	chr19:1411387-1411674(+)$1	287	16	46	13.3455

#otherMatches

#Seq PSSM
UGGGGCUAGGGAGGGUCUUCCAAGGCACCC	chr8:145000399-145000673(-)$1	274	76	106	10.5999
GCAGGUUUCUGUGAAGACGGAGAAGCAGGC	chr7:1133731-1133982(-)$1	251	13	43	10.7776
UGAUACCAUUCUGUAACCAAAAGGAAccag	chr7:1006198-1006484(-)$1	286	228	258	11.7276
UCAUCCUGGGCUUCCAGAGUCCAGGGUGGG	chr16:89033284-89033511(-)$1	227	181	211	10.7333
uuuguagguuccauuuuugucaucugcaag	chr2:3326180-3326411(-)$1	231	138	168	10.3566
CUUGGGGGGAGAGUGUUCUCCUGCCCACCC	chr1:2210948-2211228(+)$1	280	127	157	12.9117
GGACCAUUUUGUCUUUCUGACAGGAUGGUC	chr16:89466023-89466271(-)$1	248	12	42	11.1565
gcccagccaaugcgcaugcgugaggugcga	chr20:25846382-25846627(-)$1	245	109	139	11.7267
AAGACUGUGAACUCAUUCAGUUCACUGCUU	chr19:5077952-5078239(+)$1	287	29	59	9.7118
ACCUGCAGAUGCAGUGAUGCUGACUGACGG	chr7:23454363-23454614(-)$1	251	0	30	11.0878
GCGGGGUCGGCCUUGGGGGGCUGGUCCGCG	chr19:2270127-2270364(+)$1	237	101	131	10.4683
UCCAGGAGGGGGCGCCUGCCCCCGAGGAGG	chr16:87736083-87736342(-)$1	259	184	214	11.0294
cccaacuccacuacucgugguggguccuug	chr2:3323220-3323479(-)$1	259	150	180	13.1983
CCUGCCGUGGGCGCUCACCCCGCAGUUGCU	chr12:133129420-133129668(+)$1	248	32	62	11.0824
CGGCCUUCUGAGGAGGACUUCAGGCGCCCU	chr8:94746820-94747051(-)$1	231	177	207	13.1031
guaugauagaggugauCAUCUUUAAUAUGA	chr7:1157831-1158082(-)$1	251	217	247	13.0809
ACUAGUGACAUUCGCAAGGGUGGGUCUGGU	chr1:2214012-2214286(+)$1	274	242	272	10.4024
uagcuuuugcguggaccaugcagcuguggg	chr16:88995773-88996001(-)$1	228	25	55	9.9936
UCACUCAAGACACACAAGUGUUUUCCACAG	chr16:1366318-1366598(+)$1	280	198	228	14.1229
AAGGGCGGGUUCCAUGUGGACCUGACAAAA	chr17:78778616-78778877(+)$1	261	37	67	11.1037
UCGUCCUCUGCGGACGGCUGCAGAGGAUGA	chr8:141108631-141108878(-)$1	247	55	85	14.5959
cgaguacuguuuagaaaugaaaaggagcgg	chr19:5080808-5081046(+)$1	238	52	82	10.7475
gaugguccucuucuuaugaaacgcccagaa	chr16:89185577-89185814(+)$1	237	170	200	11.5237
CAGCGCUCGGCUAACCAUGGCCGAAUGGAG	chr12:133133504-133133779(+)$1	275	60	90	13.6394
CCGAGCUGGAGCUGAGAAGCCACAGACCCG	chr16:89017966-89018230(-)$1	264	215	245	11.0385
AGAGGGUGGAUGGACAGCUGCUGCCUCAGC	chr22:49826759-49827001(-)$1	242	6	36	12.1816
gcuuugccacggccacagugggagccagaa	chr10:133763810-133764059(+)$1	249	147	177	11.3848
GGGUUGAGCCGUGucucucaggcauuccca	chr4:847236-847517(-)$1	281	230	260	9.4194
UUUAAACUAGAUAUUUUUACUUUGUUGCAU	chr21:9922571-9922858(-)$1	287	18	48	12.6957
GAGGAUAGCCAGCAAGAGGAGGCACAGUAU	chr11:71726054-71726329(-)$1	275	232	262	11.9303
GAGGGUGGGCACGGGGCUGCGGCCACCCGC	chr8:144672189-144672425(-)$1	236	95	125	10.6994
CUGCUCGGGGGCUUGGUGGCUGCUGGGUGG	chr1:2210417-2210701(+)$1	284	64	94	11.8545
CCCAGGCUGGGAGGGGACUCACCGAGUGUG	chr19:55558594-55558900(+)$1	306	138	168	11.4403
AAAGCAAAAUUUUGAAUAAGAUUUCUGAGA	chr11:3415418-3415652(+)$1	234	184	214	12.8956
GCCUGUGAUGCGGUGGUCCUUGUGACAUGU	chr1:2211279-2211535(+)$1	256	58	88	12.3870
accuggcaucacaaagcugagaaguacauu	chr7:23454092-23454342(-)$1	250	50	80	11.8657
gugcugagagcucuucugugguucucaGCA	chr7:2080517-2080789(-)$1	272	128	158	14.5016
CAUAGACACAUACCCAAGUAUGUGUCAGGU	chr16:81550197-81550491(+)$1	294	216	246	13.5644
CAGAAAGGUGCCCUUCAGGGUGCUUUCACC	chr17:27023909-27024175(+)$1	266	234	264	14.3187
ccauggaauaaagugaacuuuaugaaaaug	chr22:49858059-49858340(-)$1	281	198	228	11.4227
CGGGUUCGGGGCUAAGGAGCCGGGAGGAAG	chr22:49934539-49934777(-)$1	238	27	57	11.2172
AGCAGGCAAAUGCGCCAGACACGCCACAAA	chr16:89008449-89008699(-)$1	250	48	78	12.2445
AACGUGGGAGGGGCAGGCGCCUCCUAGCAG	chr1:2171660-2171932(+)$1	272	110	140	14.2953
AGAGUGAGGAGGCACAAGCACUCCUCUGAG	chr9:133760237-133760484(+)$1	247	59	89	11.2964
GGGAGGUCGAAGCCCCUGCUUUACACUGGA	chr8:608308-608606(-)$1	298	162	192	11.7721
accagguuuucgccagcgugagaaggugaa	chr18:75690127-75690390(-)$1	263	165	195	11.5869
GUCUGGAGGAAGGGCAGCCUGAUUUAGUUU	chr1:246137200-246137466(-)$1	266	99	129	10.5390
GGGGCUCUCAUUGUGAUCAGAGGAGGGCUG	chr22:19875718-19875986(-)$1	268	207	237	11.4252
CAGCCUGCCUGAGAUUGCUACUGGUGGGCU	chr11:62300265-62300547(-)$1	282	65	95	13.9435
caGCUGUUCUGCAUCCUGUGGGGCGUGGUG	chr7:1153166-1153409(-)$1	243	212	242	10.8540
UGGGUGGGGAGCCGGCCGGCCGUGACCCAG	chr9:139565251-139565507(+)$1	256	101	131	11.7708
GUUAAAAAUAACAACACUGUGUAUGCUUAA	chr21:9927186-9927448(-)$1	262	5	35	11.3217
CAGGCUCAGGGCUCUGGGGUCUGAGUGAGG	chr20:62551434-62551683(+)$1	249	117	147	11.6243
UGCUGGUUCCUUCCCUCGAAGGGGCCCUUC	chr16:89347152-89347422(-)$1	270	165	195	11.0548
CUGUCUGGGAGCAUCUGUGCUUUUGGCCUG	chr19:1411387-1411674(+)$1	287	16	46	13.3455

#DB
(((((((..((((....))))..))).)))	chr8:145000399-145000673(-)$1	1	76	106	10.5999
((..((((((.((....)).))))))..))	chr7:1133731-1133982(-)$1	1	13	43	10.7776
((...((.((.((....)).))))...)))	chr7:1006198-1006484(-)$1	1	228	258	11.7276
.((((((((((((...))))))))))))))	chr16:89033284-89033511(-)$1	1	181	211	10.7333
..(((((((..((....))..)))))))((	chr2:3326180-3326411(-)$1	1	138	168	10.3566
(((((((((.(((....)))...))).)))	chr1:2210948-2211228(+)$1	1	127	157	12.9117
)((((((((((((.....))))))))))))	chr16:89466023-89466271(-)$1	1	12	42	11.1565
..(..(((.((((....))))..)))..).	chr20:25846382-25846627(-)$1	1	109	139	11.7267
(((.(.(((((((.....))))))).))))	chr19:5077952-5078239(+)$1	1	29	59	9.7118
..((((((..(((....)))...))).)))	chr7:23454363-23454614(-)$1	1	0	30	11.0878
(((((..((((((....)))))).))))).	chr19:2270127-2270364(+)$1	1	101	131	10.4683
(((....((((((....))))))..))).)	chr16:87736083-87736342(-)$1	1	184	214	11.0294
(((((.(((((((....)))))))...)))	chr2:3323220-3323479(-)$1	1	150	180	13.1983
(..((.(((((.(....)))))).))....	chr12:133129420-133129668(+)$1	1	32	62	11.0824
.(((..(((((((....))))))).)))))	chr8:94746820-94747051(-)$1	1	177	207	13.1031
((((..(((((((....)))))))))))))	chr7:1157831-1158082(-)$1	1	217	247	13.0809
(((((...(((((....)))))...)))))	chr1:2214012-2214286(+)$1	1	242	272	10.4024
((.((.(((((((...)))))))....)).	chr16:88995773-88996001(-)$1	1	25	55	9.9936
(((((.(((((((....)))))))....))	chr16:1366318-1366598(+)$1	1	198	228	14.1229
....((((((((.....))))))).)....	chr17:78778616-78778877(+)$1	1	37	67	11.1037
(((((((((((((....)))))))))))))	chr8:141108631-141108878(-)$1	1	55	85	14.5959
((....((.((((....)))).))...)))	chr19:5080808-5081046(+)$1	1	52	82	10.7475
..(((.....(((....)))....)))..)	chr16:89185577-89185814(+)$1	1	170	200	11.5237
((....(((((((....))))))).))).)	chr12:133133504-133133779(+)$1	1	60	90	13.6394
.((.((((..(((....)))..))).).))	chr16:89017966-89018230(-)$1	1	215	245	11.0385
((.((((((.(((....)))))))))...)	chr22:49826759-49827001(-)$1	1	6	36	12.1816
(((((((..(.((....)).)..))..)))	chr10:133763810-133764059(+)$1	1	147	177	11.3848
(((....(((.((.....)))))...))).	chr4:847236-847517(-)$1	1	230	260	9.4194
((..(((.((.((....))))..)))....	chr21:9922571-9922858(-)$1	1	18	48	12.6957
(..(...(((..(....)..))).)..)))	chr11:71726054-71726329(-)$1	1	232	262	11.9303
(.((((((.(.((....)).).)))))).)	chr8:144672189-144672425(-)$1	1	95	125	10.6994
((((((((.((((....)))).))))))))	chr1:2210417-2210701(+)$1	1	64	94	11.8545
.(((.((((((((....))).)).))).))	chr19:55558594-55558900(+)$1	1	138	168	11.4403
..((..(((((((....)))))))))....	chr11:3415418-3415652(+)$1	1	184	214	12.8956
((.(((.(((.((....)).))).))).))	chr1:2211279-2211535(+)$1	1	58	88	12.3870
(....((.((.((....)).)).))...))	chr7:23454092-23454342(-)$1	1	50	80	11.8657
.((((((((((((....).)))))))))))	chr7:2080517-2080789(-)$1	1	128	158	14.5016
(...(((((((((....)))))))))..))	chr16:81550197-81550491(+)$1	1	216	246	13.5644
(((.(((((((((....)))))))))...)	chr17:27023909-27024175(+)$1	1	234	264	14.3187
((((...((((((....))))))....)))	chr22:49858059-49858340(-)$1	1	198	228	11.4227
((..(((..((((....))))....)))..	chr22:49934539-49934777(-)$1	1	27	57	11.2172
....(((...(((....).)).)))....)	chr16:89008449-89008699(-)$1	1	48	78	12.2445
....(((((((.(....).)))))))....	chr1:2171660-2171932(+)$1	1	110	140	14.2953
((((.(((...((....)).)))))))).)	chr9:133760237-133760484(+)$1	1	59	89	11.2964
(...(((.(((((....)))))..)))...	chr8:608308-608606(-)$1	1	162	192	11.7721
(((...(((((((....)))))))))))..	chr18:75690127-75690390(-)$1	1	165	195	11.5869
(.(((((...(((....)))..))))).))	chr1:246137200-246137466(-)$1	1	99	129	10.5390
(((((((((.(((....)))..))))...)	chr22:19875718-19875986(-)$1	1	207	237	11.4252
(((((((((.(((....)).).))))))))	chr11:62300265-62300547(-)$1	1	65	95	13.9435
((.((((((((((...))))))))).).))	chr7:1153166-1153409(-)$1	1	212	242	10.8540
(((((.(.(.(((....)))).).))))).	chr9:139565251-139565507(+)$1	1	101	131	11.7708
(((((..((((((....))).)))..))))	chr21:9927186-9927448(-)$1	1	5	35	11.3217
(..(((((((.((...)).)))))))....	chr20:62551434-62551683(+)$1	1	117	147	11.6243
....(((((((((....)))))))))....	chr16:89347152-89347422(-)$1	1	165	195	11.0548
..(((.(((((((....)))))))))).))	chr19:1411387-1411674(+)$1	1	16	46	13.3455

#PSSM
e : 0.21	b : 0.10	g : 0.10	c : 0.09	: : 0.07	! : 0.07	i : 0.05	d : 0.05	$ : 0.05	h : 0.03	[ : 0.03	# : 0.03	= : 0.03	f : 0.01	
e : 0.18	c : 0.12	g : 0.10	! : 0.10	= : 0.09	b : 0.05	i : 0.05	# : 0.05	$ : 0.05	: : 0.03	d : 0.03	[ : 0.03	" : 0.03	h : 0.01	
e : 0.18	c : 0.14	! : 0.10	= : 0.09	g : 0.09	# : 0.09	[ : 0.07	" : 0.05	i : 0.03	b : 0.03	$ : 0.03	a : 0.01	f : 0.01	d : 0.01	
e : 0.16	# : 0.12	g : 0.10	c : 0.10	= : 0.09	! : 0.07	" : 0.07	[ : 0.05	b : 0.05	i : 0.03	f : 0.03	a : 0.03	$ : 0.03	
c : 0.16	g : 0.10	e : 0.10	i : 0.10	= : 0.09	# : 0.09	" : 0.07	! : 0.07	f : 0.05	a : 0.05	b : 0.03	[ : 0.03	
c : 0.20	[ : 0.12	= : 0.09	g : 0.09	! : 0.09	i : 0.09	# : 0.07	" : 0.07	f : 0.05	b : 0.05	$ : 0.01	e : 0.01	d : 0.01	
g : 0.25	c : 0.20	= : 0.09	i : 0.09	b : 0.07	f : 0.05	" : 0.05	! : 0.03	# : 0.03	e : 0.03	$ : 0.01	[ : 0.01	d : 0.01	a : 0.01	
g : 0.25	c : 0.18	f : 0.10	[ : 0.09	= : 0.09	i : 0.09	! : 0.05	" : 0.05	e : 0.01	b : 0.01	$ : 0.01	d : 0.01	
g : 0.25	! : 0.09	f : 0.09	= : 0.09	c : 0.09	b : 0.07	[ : 0.07	i : 0.07	e : 0.05	" : 0.05	$ : 0.01	d : 0.01	a : 0.01	
g : 0.23	d : 0.09	[ : 0.09	f : 0.07	b : 0.07	= : 0.07	c : 0.07	i : 0.07	! : 0.05	e : 0.05	" : 0.05	a : 0.03	$ : 0.01	
g : 0.21	c : 0.18	[ : 0.16	d : 0.09	= : 0.07	i : 0.07	f : 0.05	e : 0.05	! : 0.03	b : 0.01	" : 0.01	a : 0.01	
b : 0.23	g : 0.20	c : 0.18	d : 0.09	= : 0.07	i : 0.07	f : 0.05	[ : 0.03	e : 0.03	! : 0.01	
b : 0.21	c : 0.18	g : 0.18	d : 0.09	a : 0.09	i : 0.07	= : 0.05	f : 0.05	e : 0.03	n : 0.01	
m : 0.85	l : 0.07	n : 0.07	
m : 0.85	l : 0.07	n : 0.07	
m : 0.85	l : 0.07	n : 0.07	
m : 0.85	n : 0.07	= : 0.01	g : 0.01	i : 0.01	b : 0.01	
b : 0.20	c : 0.18	g : 0.18	d : 0.09	a : 0.09	i : 0.07	n : 0.05	f : 0.05	= : 0.03	e : 0.03	
b : 0.20	g : 0.20	c : 0.18	d : 0.09	] : 0.07	i : 0.07	= : 0.05	f : 0.05	e : 0.05	2 : 0.01	
g : 0.23	c : 0.18	] : 0.14	d : 0.09	= : 0.07	i : 0.07	f : 0.05	e : 0.05	b : 0.05	2 : 0.03	
g : 0.23	d : 0.09	f : 0.09	b : 0.07	= : 0.07	2 : 0.07	a : 0.07	c : 0.07	i : 0.07	e : 0.05	3 : 0.03	] : 0.03	4 : 0.01	
g : 0.25	2 : 0.12	] : 0.10	f : 0.09	c : 0.09	= : 0.07	i : 0.07	b : 0.05	e : 0.05	3 : 0.03	4 : 0.03	
g : 0.25	c : 0.12	f : 0.10	2 : 0.09	= : 0.09	i : 0.09	b : 0.05	3 : 0.05	e : 0.03	4 : 0.03	] : 0.01	d : 0.01	a : 0.01	
g : 0.23	c : 0.14	] : 0.10	= : 0.09	i : 0.09	b : 0.07	4 : 0.07	f : 0.05	2 : 0.03	3 : 0.03	e : 0.03	d : 0.01	
c : 0.21	3 : 0.09	= : 0.09	g : 0.09	i : 0.09	e : 0.07	b : 0.07	4 : 0.07	f : 0.05	] : 0.05	2 : 0.03	d : 0.03	a : 0.01	
c : 0.25	3 : 0.09	= : 0.09	e : 0.09	g : 0.07	4 : 0.07	i : 0.07	f : 0.05	] : 0.05	2 : 0.05	b : 0.03	d : 0.03	a : 0.01	
c : 0.18	4 : 0.18	3 : 0.12	e : 0.10	2 : 0.09	= : 0.09	] : 0.05	a : 0.05	g : 0.03	f : 0.01	i : 0.01	d : 0.01	5 : 0.01	
e : 0.16	4 : 0.14	c : 0.10	] : 0.10	g : 0.09	= : 0.09	3 : 0.09	2 : 0.07	d : 0.05	b : 0.01	f : 0.01	i : 0.01	5 : 0.01	
e : 0.18	4 : 0.12	b : 0.10	g : 0.09	c : 0.09	= : 0.07	] : 0.07	3 : 0.07	i : 0.03	d : 0.03	2 : 0.03	F : 0.01	a : 0.01	6 : 0.01	5 : 0.01	
e : 0.16	g : 0.14	b : 0.12	4 : 0.10	c : 0.09	= : 0.07	] : 0.05	d : 0.05	2 : 0.03	3 : 0.03	i : 0.03	F : 0.01	a : 0.01	6 : 0.01	5 : 0.01	

#score	650.7753330075363
#seq	55
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_CDS_m1_run2.txt

#BEAR
bb:ccc[ggggggg####ddddmmmmdddd4444gggggg	chr9:111775481-111775767(-)$1	286	156	196	13.1726
FFbb!!ffffff[iiiiiiiiimmmmiiiiiiiii]ffff	chr6:36564437-36564662(+)$1	225	26	66	11.7098
ggg$$$$$ccc[ffffff[cccmmmmcccffffffccc22	chr17:41150664-41150944(+)$1	280	164	204	11.9611
ggggg[ggggggg[a[bb[cccooooooccc]bb]a22gg	chr19:18547536-18547851(-)$1	315	114	154	12.6790
====[ccc[eeeeebba[ddddmmmmdddd]a]bb]eeee	chrX:48814546-48814819(-)$1	273	53	93	12.8545
=====!!bb[bb[dddd[a[bbmmmmbb]a]dddd]bb22	chr15:76603579-76603841(-)$1	262	77	117	12.1546
bb]dddd:===========[bbmmmmbb]===========	chr11:637263-637549(+)$1	286	141	181	12.6501
:ccc!!=============bboooooobb]==========	chr15:75230156-75230487(-)$1	331	1	41	12.9855
dda[gggggggeeeee"""cccmmmmccc333eeeee]gg	chr8:48872492-48872739(-)$1	247	128	168	16.1436
c[ccc[ffffff"""ccc[bbmmmmbbccc333ffffff]	chr15:44085072-44085306(+)$1	234	18	58	11.9600
ccc[dddd[ddddbb[a!!cccnnnnnccc]a]bb22ddd	chr5:140026737-140026989(-)$1	252	27	67	11.8054
"""ccc####dddd[eeeee[ammmma]eeeee]dddd33	chr16:89627944-89628194(+)$1	250	107	147	11.3143
[bb[a!!bb[ccc[ccc!!bb[allla]bb22ccc]cccb	chr5:137688296-137688636(+)$1	340	143	183	12.5800
cccdddd[ccc[eeeee[ddddllldddd]eeeee]ccc]	chr19:14682665-14682928(-)$1	263	127	167	12.3110
::ggggggg[ccc[ccc!!cccmmmmccc333ccc]cccg	chr15:82335837-82336110(-)$1	273	8	48	15.8413
e[ccc[a[eeeee[ccc[cccnnnnnccc]ccc22eeeee	chr3:122785828-122786147(+)$1	319	202	242	12.4226
!!cccbb[a[ccc"""bb[ccclllccc]bb]ccc]a]bb	chr10:27443006-27443280(-)$1	274	132	172	12.0356
ccc[dddddddd[ccc"""cccnnnnnccc4444ccc]dd	chr6:109703464-109703718(-)$1	254	176	216	13.1386
f]dddd=========="""bboooooobb333========	chr18:47015801-47016020(-)$1	219	169	209	14.1017
f####ccc!!ffffff"""cccmmmmccc]ffffff]ccc	chr7:96746974-96747277(+)$1	303	91	131	14.4653
ddd"""dddd!!eeeee!!cccmmmmccc]eeeee22ddd	chr14:35761626-35761857(+)$1	231	130	170	14.3166
cc[ccc[ffffff[ddddddddllldddd333ddddffff	chr10:73594077-73594334(-)$1	257	59	99	11.8132
ggggggg[ccc!!dddd[ddddllldddd333dddd]ccc	chr17:73892544-73892780(-)$1	236	102	142	13.3118
::==========!!bb!!a[bbmmmmbba22bb333====	chr20:60962831-60963069(+)$1	238	39	79	13.5478
[ccc!!ccca[ffffffbbcccmmmmccc]bb]ffffff]	chr15:80215342-80215607(-)$1	265	143	183	12.7319
cc[dddd"""ccc[eeeee[bbmmmmbb]eeeee]ccc]d	chr9:131790306-131790651(-)$1	345	43	83	12.2175
!a[eeeee[a[bb[ccc####annnnna4444ccc]bb]a	chrX:48814228-48814472(-)$1	244	146	186	12.0827
b!!gggggggccc[ccc[cccccclllccc22ccc]cccc	chr2:54197816-54198047(-)$1	231	153	193	13.3521
::bb[dddd[ggggggg"""bbnnnnnbb333ggggggg]	chr8:144940435-144940683(-)$1	248	128	168	11.0083
!!a[ffffff[cccdddda[bbmmmmbb]a]dddd]cccf	chr6:43197031-43197287(-)$1	256	23	63	12.3911
ee[ccc[dddd"""ddddddddmmmmdddd]dddd333dd	chr9:32572914-32573196(-)$1	282	102	142	13.0580
g[dddd[ccc"""dddd!!cccmmmmccc22dddd333cc	chr9:126692083-126692349(-)$1	266	193	233	15.7514
iiiiiiii22eeeeeccc[cccmmmmccc]cccccc[ggg	chr17:80016137-80016400(-)$1	263	43	83	13.7683
iiiiiii[eeeee"""bb!!ccclllccc333bb]eeeee	chr6:3259245-3259565(+)$1	320	77	117	14.0696
ee]gggggggdddd[ddddcccmmmmccc22ddddddddE	chr5:154135206-154135453(+)$1	247	97	137	12.0434
eee[ccc[a"""eeeee!!cccmmmmccc]eeeee4444a	chr7:154794538-154794788(-)$1	250	4	44	15.3249
ccbbccc####bb!!bb[ddddmmmmdddd]bb4444bb3	chr2:217365978-217366222(+)$1	244	99	139	12.2249
#dddd[eeeee"""dddd[cccnnnnnccc]ddddeeeee	chr11:57508854-57509206(+)$1	352	103	143	11.5875
gggggggaccc!!ccc[ccc[bbmmmmbb]ccc333ccc2	chr1:23346251-23346491(+)$1	240	152	192	12.4871
gg!!dddd"""a!!ccc!!cccmmmmccc]ccc22a22dd	chr22:38349629-38349905(+)$1	276	223	263	15.3640
bb[cccdddd"""eeeee[cccmmmmccc4444eeeeedd	chr11:5290777-5290996(-)$1	219	151	191	14.2553
cc[dddd"""eeeeebb!!cccmmmmccc22bb4444eee	chr16:18812652-18812932(-)$1	280	153	193	14.9295
deeeee[iiiiiiiiiddddoooooodddd]iiiiiiiii	chr6:31762708-31762994(-)$1	286	159	199	11.3619
gggg!!bbbb[ggggggg!!bbmmmmbb22ggggggg]bb	chr18:51750814-51751046(-)$1	232	40	80	11.9852
:::bb[eeeee[ccc"""bbccclllccc333bb333ccc	chr5:180670638-180670888(-)$1	250	184	224	11.6681
========!!a[a[ccc[cccnnnnnccc]ccc]a]a333	chr3:179322481-179322838(+)$1	357	114	154	14.5074
bb::ggggggg[dddd"""cccmmmmccc]dddd22gggg	chr19:41770220-41770570(+)$1	350	136	176	13.1637
f[eeeee[dddddddd!!ddddmmmmdddd]dddd22ddd	chr11:65343670-65343949(+)$1	279	21	61	12.2969
dddd!!bb[ddddffffffcccmmmmccc]ffffff22dd	chr7:150649811-150650042(-)$1	231	113	153	11.9953
!bb[bb[ggggggg$$$$$ddddllldddd22ggggggg2	chr19:13049421-13049654(+)$1	233	88	128	11.2843
hhhhhhhh[ffffff[ccccccmmmmccc]cccffffff]	chr2:236403165-236403447(+)$1	282	65	105	12.5842
e[eeeee!!dddd[aa[eeeeemmmmeeeee]a]a]dddd	chr6:52149302-52149564(-)$1	262	81	121	11.2922
meeeeeeeeeeeeeee[a[cccmmmmccc]a]eeeee444	chr3:25705589-25705897(-)$1	308	45	85	13.2663
iiiiiii[eeeee"""bb!!ccclllccc333bb]eeeee	chr6:3259125-3259441(+)$1	316	197	237	14.0696
ddbb[dddd"""eeeee!!cccmmmmccceeeee333ddd	chr7:99006059-99006298(-)$1	239	37	77	14.2659
:ddddgggggggccc"""ddddmmmmdddd22ccc333gg	chr1:955499-955737(+)$1	238	188	228	13.7414

#otherMatches

#Seq PSSM
GAGCAGACGCUACUCCCGCUGGUUUCUCAGGUAAAGUGGC	chr9:111775481-111775767(-)$1	286	156	196	13.1726
GUUCUUUCUAAGGAUCUGUGGUUUUAACUGUAGAUGUUUA	chr6:36564437-36564662(+)$1	225	26	66	11.7098
GCAAAGCUGUCAUCGUGAAGGUAUCAGCCUCGCGGGACUC	chr17:41150664-41150944(+)$1	280	164	204	11.9611
UCUGGAGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGG	chr19:18547536-18547851(-)$1	315	114	154	12.6790
cccgggccgaugcccccggcgccgcggcgcggcggaggug	chrX:48814546-48814819(-)$1	273	53	93	12.8545
GCUGUAAGGCCGAGGUUGCGGCGGAAGCGGAGACCAUGUU	chr15:76603579-76603841(-)$1	262	77	117	12.1546
GCGCGGCGGCGCUGGUGGGGGGCGUGCUGCUCAUCGGCGC	chr11:637263-637549(+)$1	286	141	181	12.6501
CCAGAGUCGCAGUGGGCGGGCCUACGUGCUCCGCCCGCUG	chr15:75230156-75230487(-)$1	331	1	41	12.9855
GGUGCUGCCCUGGCCGGUCAUCAACUGAUCCGCGGCCUGG	chr8:48872492-48872739(-)$1	247	128	168	16.1436
UGCUGGCCGCGCUGGGGUAGAAGGGUCGCCGGUGUGUGGG	chr15:44085072-44085306(+)$1	234	18	58	11.9600
UCUCCGGCCCCGCAGGGACUUCAUUGAGAAACGCUACGUG	chr5:140026737-140026989(-)$1	252	27	67	11.8054
AAGUCCACGGAGUCCCUGCAGGCCAACGUGCAGCGGCUGA	chr16:89627944-89628194(+)$1	250	107	147	11.3143
ggugggaggcggcgggcgggagcgcgggucaggccggccc	chr5:137688296-137688636(+)$1	340	143	183	12.5800
CCUGGUCCGGCGCUACCUGGGCGAUGCCUCGGUGGAGCCC	chr19:14682665-14682928(-)$1	263	127	167	12.3110
CACCUGGGGCACCACUUAUCUGGGCCCAGUUCGAGCGGUC	chr15:82335837-82336110(-)$1	273	8	48	15.8413
CGUGGCUGCUGCUGGCAAUCUGGGUGAGACUGUGGGGCAG	chr3:122785828-122786147(+)$1	319	202	242	12.4226
CCGCCGGAGAUGUUUUCCUUGUCGAGCACGGUGCAACCCC	chr10:27443006-27443280(-)$1	274	132	172	12.0356
UGCCUGGGCGUGCUCUGCGUGCUGUCCGCGGACAAGAACA	chr6:109703464-109703718(-)$1	254	176	216	13.1386
ACCUACAGAGCUCAUGGUCGGAUUAACCCAUACAUGAGCU	chr18:47015801-47016020(-)$1	219	169	209	14.1017
GCAUUGUACAAGCGCGUCUUGCAGCUGCACCGUGUUCUGC	chr7:96746974-96747277(+)$1	303	91	131	14.4653
AGGUGAGUGAACCAGGUUCGCCUGUGGGCCACCUGAAUUG	chr14:35761626-35761857(+)$1	231	130	170	14.3166
GUUUUCAUUUUAGCUCUAGCCGGCCCGGUCCUUGGACUGA	chr10:73594077-73594334(-)$1	257	59	99	11.8132
GCAGCGUGUGCACCGUGCGCGAGUGUCGCCUCCACGAGCG	chr17:73892544-73892780(-)$1	236	102	142	13.3118
UGGUUUGUGACCCUUCUUCUCUUUCUAGGUUGACAAGGUC	chr20:60962831-60963069(+)$1	238	39	79	13.5478
ggggcugggcggggacgccccggUGGCGGAGGACGUCCCG	chr15:80215342-80215607(-)$1	265	143	183	12.7319
gCGCGCUCGGGCUGGCUCGGCGGCUGCggcgggcgggcag	chr9:131790306-131790651(-)$1	345	43	83	12.2175
GGAGGUCGGCGCAGGCUACAACAGUGAGGACGAGUAUGAG	chrX:48814228-48814472(-)$1	244	146	186	12.0827
GGAGAgcccccggagccgggcgggcgucccgagccgggcc	chr2:54197816-54198047(-)$1	231	153	193	13.3521
GGGCGUGGUGGGCGGCGAGAUCCAGGAGAAGCUGCUGUCG	chr8:144940435-144940683(-)$1	248	128	168	11.0083
CUGGGCCGGGCGGGGUCACGUGGCCGCGGGCUGGCGCCCC	chr6:43197031-43197287(-)$1	256	23	63	12.3911
UGCGCCGUGUCCUUUUGCGUUGGUACCAGCGGCGACAUGA	chr9:32572914-32573196(-)$1	282	102	142	13.0580
cgggccgggcggagccgggccgggcgcggggcggcgaggc	chr9:126692083-126692349(-)$1	266	193	233	15.7514
CCUGCUGGCCAGCCUGGCCCCGGGAGUGGUGCUGGCCACA	chr17:80016137-80016400(-)$1	263	43	83	13.7683
GAGCAGCUGGUCCACUUCCACGUCAUGCGGCUGACGGACU	chr6:3259245-3259565(+)$1	320	77	117	14.0696
GGGCGGGCGCGCAGAUGGCCACUCAGGUGGAGCCGCUGCU	chr5:154135206-154135453(+)$1	247	97	137	12.0434
cggaccccgauucgcaggaccgggcccgggcugcgcgggc	chr7:154794538-154794788(-)$1	250	4	44	15.3249
UCACGGUAAAGUCCGCCAUCAGAAGACUGAAGGAGUUGAA	chr2:217365978-217366222(+)$1	244	99	139	12.2249
GGAGCAGAGCUUCCGGGCUGCGCUCUUCGUUGCCCAGUUU	chr11:57508854-57509206(+)$1	352	103	143	11.5875
GGAGGGGCGUCGGACCAGCCGGCGCAAGCGGGCGAAGGUA	chr1:23346251-23346491(+)$1	240	152	192	12.4871
GAAGGGGCGGAUGAGGCAAGGCUUGGGUCGGCUGAGGAGC	chr22:38349629-38349905(+)$1	276	223	263	15.3640
CCCUCUGCCAUCCUGGGCAACCCCAAGGUCAAGGCCCAUG	chr11:5290777-5290996(-)$1	219	151	191	14.2553
GGAGAUAAUCGCAGCACCAACCUGCUGGUGAGUCCUGGCU	chr16:18812652-18812932(-)$1	280	153	193	14.9295
CCACCCCGCCUGCCGGCCCUGGAGCAGGGGCCCGGUGGGC	chr6:31762708-31762994(-)$1	286	159	199	11.3619
ugcgggcggggcgggUCUCCGGGAUUCCAAGGGCUCGGUU	chr18:51750814-51751046(-)$1	232	40	80	11.9852
UCCGCCUCUCGAGGUACGGACUAAGGUAGAUUUCAGGACC	chr5:180670638-180670888(-)$1	250	184	224	11.6681
UAGUAGCCAUGGCGGCCAUGAGUUUGUUGCGGCGGGUUUC	chr3:179322481-179322838(+)$1	357	114	154	14.5074
AGAGCCCUGGGAggccgggccgggcucgggggccaccccg	chr19:41770220-41770570(+)$1	350	136	176	13.1637
CAUGGGGACCCGGGCCGGGCCAGCGGUGGCGGGCCAGCGG	chr11:65343670-65343949(+)$1	279	21	61	12.2969
GGCGCCGACGUGCUGCCUGAGUACAAGCUGCAGGCACCGC	chr7:150649811-150650042(-)$1	231	113	153	11.9953
CGCUGCUGCUCGGCCUCCUCGGCCUGGCCGUCGCCGAGCC	chr19:13049421-13049654(+)$1	233	88	128	11.2843
ccccgggggcUgcggcgccccgggcucggcggcccgcggg	chr2:236403165-236403447(+)$1	282	65	105	12.5842
UGGCAGCGGGCAUGGCGGGUACCGUGGUGCUGGACGAUGU	chr6:52149302-52149564(-)$1	262	81	121	11.2922
CGGCCCGCAGGGAGGCGGGAGCGGCGGCUGCGGCCUCAGG	chr3:25705589-25705897(-)$1	308	45	85	13.2663
GAGCAGCUGGUCCACUUCCACGUCAUGCGGCUGACGGACU	chr6:3259125-3259441(+)$1	316	197	237	14.0696
GCCCAGGAGGAAGAAGUCGAGCCCAAGCUAUUUCCGGUUC	chr7:99006059-99006298(-)$1	239	37	77	14.2659
GUGCUCACCGGGACGGUGGAGGAGAUCCUCAACGUGGACC	chr1:955499-955737(+)$1	238	188	228	13.7414

#DB
)).(((.(((((((....((((....))))....))))))	chr9:111775481-111775767(-)$1	1	156	196	13.1726
((((..((((((.(((((((((....))))))))).))))	chr6:36564437-36564662(+)$1	1	26	66	11.7098
(((.....(((.((((((.(((....))))))))))))..	chr17:41150664-41150944(+)$1	1	164	204	11.9611
(((((.(((((((.(.((.(((......))).)).)..))	chr19:18547536-18547851(-)$1	1	114	154	12.6790
((((.(((.((((((((.((((....)))).).)).))))	chrX:48814546-48814819(-)$1	1	53	93	12.8545
(((((..((.((.((((.(.((....)).).)))).))..	chr15:76603579-76603841(-)$1	1	77	117	12.1546
)).)))).(((((((((((.((....)).)))))))))))	chr11:637263-637549(+)$1	1	141	181	12.6501
.(((..(((((((((((((((......)).))))))))))	chr15:75230156-75230487(-)$1	1	1	41	12.9855
))(.((((((((((((...(((....)))...))))).))	chr8:48872492-48872739(-)$1	1	128	168	16.1436
(.(((.((((((...(((.((....)))))...)))))).	chr15:44085072-44085306(+)$1	1	18	58	11.9600
(((.((((.((((((.(..(((.....))).).))..)))	chr5:140026737-140026989(-)$1	1	27	67	11.8054
...(((....((((.(((((.(....).))))).))))..	chr16:89627944-89628194(+)$1	1	107	147	11.3143
.((.(..((.(((.(((..((.(...).))..))).))))	chr5:137688296-137688636(+)$1	1	143	183	12.5800
)))((((.(((.(((((.((((...)))).))))).))).	chr19:14682665-14682928(-)$1	1	127	167	12.3110
..(((((((.(((.(((..(((....)))...))).))))	chr15:82335837-82336110(-)$1	1	8	48	15.8413
(.(((.(.(((((.(((.(((.....))).)))..)))))	chr3:122785828-122786147(+)$1	1	202	242	12.4226
..(((((.(.(((...((.(((...))).)).))).).))	chr10:27443006-27443280(-)$1	1	132	172	12.0356
(((.((((((((.(((...(((.....)))....))).))	chr6:109703464-109703718(-)$1	1	176	216	13.1386
).))))((((((((((...((......))...))))))))	chr18:47015801-47016020(-)$1	1	169	209	14.1017
(....(((..((((((...(((....))).)))))).)))	chr7:96746974-96747277(+)$1	1	91	131	14.4653
(((...((((..(((((..(((....))).)))))..)))	chr14:35761626-35761857(+)$1	1	130	170	14.3166
((.(((.((((((.((((((((...))))...))))))))	chr10:73594077-73594334(-)$1	1	59	99	11.8132
(((((((.(((..((((.((((...))))...)))).)))	chr17:73892544-73892780(-)$1	1	102	142	13.3118
..((((((((((..((..(.((....)))..))...))))	chr20:60962831-60963069(+)$1	1	39	79	13.5478
.(((..((((.(((((((((((....))).)).)))))).	chr15:80215342-80215607(-)$1	1	143	183	12.7319
((.((((...(((.(((((.((....)).))))).))).)	chr9:131790306-131790651(-)$1	1	43	83	12.2175
.(.(((((.(.((.(((....(.....)....))).)).)	chrX:48814228-48814472(-)$1	1	146	186	12.0827
(..((((((((((.(((.((((((...)))..))).))))	chr2:54197816-54198047(-)$1	1	153	193	13.3521
..((.((((.(((((((...((.....))...))))))).	chr8:144940435-144940683(-)$1	1	128	168	11.0083
..(.((((((.((((((((.((....)).).)))).))))	chr6:43197031-43197287(-)$1	1	23	63	12.3911
((.(((.((((...((((((((....)))).))))...))	chr9:32572914-32573196(-)$1	1	102	142	13.0580
(.((((.(((...((((..(((....)))..))))...))	chr9:126692083-126692349(-)$1	1	193	233	15.7514
))))))))..)))))(((.(((....))).)))(((.(((	chr17:80016137-80016400(-)$1	1	43	83	13.7683
(((((((.(((((...((..(((...)))...)).)))))	chr6:3259245-3259565(+)$1	1	77	117	14.0696
)).)))))))((((.(((((((....)))..))))))))(	chr5:154135206-154135453(+)$1	1	97	137	12.0434
(((.(((.(...(((((..(((....))).)))))....)	chr7:154794538-154794788(-)$1	1	4	44	15.3249
(((((((....((..((.((((....)))).))....)).	chr2:217365978-217366222(+)$1	1	99	139	12.2249
.((((.(((((...((((.(((.....))).)))))))))	chr11:57508854-57509206(+)$1	1	103	143	11.5875
(((((((((((..(((.(((.((....)).)))...))).	chr1:23346251-23346491(+)$1	1	152	192	12.4871
((..((((...(..(((..(((....))).)))..)..))	chr22:38349629-38349905(+)$1	1	223	263	15.3640
((.(((((((...(((((.(((....)))....)))))))	chr11:5290777-5290996(-)$1	1	151	191	14.2553
((.((((...(((((((..(((....)))..))....)))	chr16:18812652-18812932(-)$1	1	153	193	14.9295
((((((.(((((((((((((......)))).)))))))))	chr6:31762708-31762994(-)$1	1	159	199	11.3619
((((..((((.(((((((..((....))..))))))).))	chr18:51750814-51751046(-)$1	1	40	80	11.9852
...((.(((((.(((...(((((...)))...))...)))	chr5:180670638-180670888(-)$1	1	184	224	11.6681
((((((((..(.(.(((.(((.....))).))).).)...	chr3:179322481-179322838(+)$1	1	114	154	14.5074
))..(((((((.((((...(((....))).))))..))))	chr19:41770220-41770570(+)$1	1	136	176	13.1637
(.(((((.((((((((..((((....)))).))))..)))	chr11:65343670-65343949(+)$1	1	21	61	12.2969
((((..((.(((((((((((((....))).))))))..))	chr7:150649811-150650042(-)$1	1	113	153	11.9953
.((.((.(((((((.....((((...))))..))))))).	chr19:13049421-13049654(+)$1	1	88	128	11.2843
((((((((.((((((.((((((....))).))))))))).	chr2:236403165-236403447(+)$1	1	65	105	12.5842
(.(((((..((((.((.(((((....))))).).).))))	chr6:52149302-52149564(-)$1	1	81	121	11.2922
.)))))((((((((((.(.(((....))).).)))))...	chr3:25705589-25705897(-)$1	1	45	85	13.2663
(((((((.(((((...((..(((...)))...)).)))))	chr6:3259125-3259441(+)$1	1	197	237	14.0696
((((.((((...(((((..(((....))))))))...)))	chr7:99006059-99006298(-)$1	1	37	77	14.2659
.((((((((((((((...((((....))))..)))...))	chr1:955499-955737(+)$1	1	188	228	13.7414

#PSSM
c : 0.14	g : 0.12	: : 0.10	b : 0.08	d : 0.08	e : 0.08	! : 0.07	= : 0.05	f : 0.05	i : 0.05	[ : 0.03	F : 0.01	" : 0.01	# : 0.01	h : 0.01	m : 0.01	
c : 0.16	b : 0.10	g : 0.10	d : 0.10	[ : 0.08	e : 0.08	: : 0.07	= : 0.05	! : 0.05	i : 0.05	F : 0.01	" : 0.01	] : 0.01	# : 0.01	a : 0.01	h : 0.01	
c : 0.14	b : 0.10	g : 0.10	d : 0.10	[ : 0.10	e : 0.08	= : 0.07	: : 0.05	i : 0.05	] : 0.03	a : 0.03	! : 0.03	" : 0.01	# : 0.01	h : 0.01	
c : 0.17	d : 0.16	g : 0.12	[ : 0.12	b : 0.08	e : 0.08	= : 0.07	i : 0.05	$ : 0.01	# : 0.01	" : 0.01	! : 0.01	: : 0.01	h : 0.01	
d : 0.19	c : 0.17	g : 0.14	! : 0.08	e : 0.08	[ : 0.05	= : 0.05	i : 0.05	b : 0.03	$ : 0.01	a : 0.01	# : 0.01	" : 0.01	f : 0.01	h : 0.01	
d : 0.19	c : 0.16	g : 0.14	! : 0.12	[ : 0.08	e : 0.08	i : 0.05	b : 0.03	= : 0.03	$ : 0.01	" : 0.01	f : 0.01	h : 0.01	
d : 0.19	g : 0.16	[ : 0.10	e : 0.10	c : 0.08	= : 0.07	f : 0.05	b : 0.05	i : 0.05	! : 0.03	$ : 0.01	# : 0.01	a : 0.01	h : 0.01	
g : 0.16	d : 0.14	[ : 0.14	f : 0.07	c : 0.07	b : 0.07	= : 0.07	e : 0.07	# : 0.03	" : 0.03	i : 0.03	$ : 0.01	: : 0.01	a : 0.01	h : 0.01	! : 0.01	
g : 0.16	d : 0.12	c : 0.10	e : 0.10	[ : 0.08	f : 0.07	= : 0.07	b : 0.05	! : 0.05	" : 0.05	# : 0.03	a : 0.03	2 : 0.01	i : 0.01	
g : 0.14	d : 0.14	e : 0.12	f : 0.08	c : 0.08	[ : 0.08	" : 0.08	= : 0.07	# : 0.03	! : 0.03	a : 0.03	2 : 0.01	i : 0.01	b : 0.01	
c : 0.16	e : 0.16	d : 0.14	g : 0.12	f : 0.08	" : 0.08	= : 0.07	[ : 0.07	b : 0.01	! : 0.01	# : 0.01	i : 0.01	a : 0.01	
e : 0.14	d : 0.12	g : 0.10	f : 0.10	c : 0.10	" : 0.10	[ : 0.08	= : 0.07	b : 0.05	! : 0.05	a : 0.01	i : 0.01	
e : 0.21	c : 0.14	d : 0.12	g : 0.08	f : 0.08	" : 0.08	! : 0.07	[ : 0.05	= : 0.05	b : 0.03	i : 0.01	a : 0.01	
[ : 0.17	e : 0.17	d : 0.12	" : 0.10	f : 0.08	c : 0.08	g : 0.07	= : 0.05	! : 0.05	i : 0.03	b : 0.01	
c : 0.19	e : 0.17	d : 0.16	f : 0.08	" : 0.07	b : 0.05	= : 0.05	i : 0.03	a : 0.03	[ : 0.03	g : 0.03	# : 0.01	! : 0.01	$ : 0.01	
c : 0.19	d : 0.17	e : 0.16	" : 0.08	f : 0.07	b : 0.07	[ : 0.05	= : 0.05	i : 0.03	g : 0.03	# : 0.01	$ : 0.01	a : 0.01	
c : 0.17	d : 0.16	" : 0.12	e : 0.12	b : 0.10	f : 0.05	[ : 0.05	a : 0.03	= : 0.03	! : 0.03	g : 0.03	# : 0.01	i : 0.01	$ : 0.01	
! : 0.19	[ : 0.14	" : 0.14	d : 0.10	b : 0.08	c : 0.07	e : 0.07	# : 0.03	f : 0.03	= : 0.03	i : 0.01	g : 0.01	$ : 0.01	a : 0.01	
! : 0.21	d : 0.19	[ : 0.14	" : 0.10	c : 0.08	a : 0.05	e : 0.05	= : 0.03	b : 0.03	i : 0.01	# : 0.01	f : 0.01	$ : 0.01	
c : 0.48	d : 0.19	[ : 0.08	b : 0.08	! : 0.05	e : 0.03	i : 0.01	# : 0.01	" : 0.01	
c : 0.51	b : 0.19	d : 0.17	[ : 0.03	i : 0.01	# : 0.01	o : 0.01	e : 0.01	
c : 0.48	d : 0.17	b : 0.14	o : 0.05	a : 0.03	n : 0.03	i : 0.01	m : 0.01	[ : 0.01	e : 0.01	
m : 0.60	n : 0.12	o : 0.07	l : 0.07	c : 0.07	a : 0.01	b : 0.01	d : 0.01	
m : 0.62	l : 0.16	n : 0.12	o : 0.07	c : 0.01	
m : 0.62	l : 0.17	n : 0.12	o : 0.07	
m : 0.60	n : 0.12	l : 0.10	o : 0.07	d : 0.05	b : 0.01	c : 0.01	
c : 0.42	d : 0.19	b : 0.12	n : 0.08	o : 0.05	a : 0.03	i : 0.01	l : 0.01	m : 0.01	e : 0.01	
c : 0.51	d : 0.19	b : 0.17	] : 0.03	i : 0.01	o : 0.01	a : 0.01	e : 0.01	
c : 0.51	d : 0.19	] : 0.08	b : 0.08	e : 0.03	i : 0.01	a : 0.01	4 : 0.01	2 : 0.01	
] : 0.26	3 : 0.16	d : 0.14	c : 0.10	2 : 0.08	e : 0.07	a : 0.03	b : 0.03	4 : 0.03	i : 0.01	f : 0.01	= : 0.01	
3 : 0.17	] : 0.16	2 : 0.14	c : 0.12	e : 0.12	4 : 0.07	f : 0.05	= : 0.03	b : 0.03	i : 0.01	g : 0.01	d : 0.01	a : 0.01	
3 : 0.17	d : 0.14	e : 0.10	c : 0.10	4 : 0.07	] : 0.07	2 : 0.07	b : 0.07	f : 0.05	i : 0.03	a : 0.03	= : 0.03	g : 0.01	
c : 0.21	d : 0.17	e : 0.14	b : 0.12	4 : 0.05	f : 0.05	] : 0.05	= : 0.05	g : 0.05	i : 0.03	3 : 0.01	a : 0.01	
d : 0.17	e : 0.14	c : 0.12	f : 0.10	b : 0.10	4 : 0.07	= : 0.05	] : 0.05	g : 0.05	i : 0.03	2 : 0.03	3 : 0.03	
d : 0.17	c : 0.14	f : 0.10	e : 0.10	g : 0.07	] : 0.07	3 : 0.07	= : 0.05	2 : 0.05	i : 0.03	b : 0.03	4 : 0.03	a : 0.03	
] : 0.21	e : 0.12	3 : 0.12	f : 0.08	g : 0.07	c : 0.07	2 : 0.07	d : 0.07	= : 0.05	4 : 0.05	a : 0.03	i : 0.01	
c : 0.16	e : 0.14	2 : 0.10	g : 0.08	f : 0.08	3 : 0.08	= : 0.07	d : 0.05	4 : 0.05	b : 0.03	a : 0.03	] : 0.03	[ : 0.01	i : 0.01	
c : 0.19	e : 0.12	d : 0.12	g : 0.08	f : 0.08	= : 0.07	] : 0.07	3 : 0.07	2 : 0.05	b : 0.05	4 : 0.03	i : 0.01	
d : 0.19	c : 0.17	g : 0.14	e : 0.10	f : 0.08	= : 0.07	b : 0.05	2 : 0.03	3 : 0.03	] : 0.03	4 : 0.03	i : 0.01	
d : 0.19	g : 0.12	e : 0.10	] : 0.08	c : 0.08	2 : 0.07	= : 0.07	f : 0.05	3 : 0.05	b : 0.05	a : 0.03	E : 0.01	i : 0.01	4 : 0.01	

#score	727.4089824671138
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_CDS_m1_run2.txt

#BEAR
eeccc[bb!!a!!cccbbmmmmbb]ccc22a22bb]ccc]	chr19:55998119-55998406(+)$1	287	227	267	12.6154
cc"""ccc!!eeeeeooooooeeeee4444ccc4444ccc	chr11:2154680-2154892(-)$1	212	162	202	14.5058
hh[cccffffff"""cccnnnnnccc333ffffff333cc	chr15:90172457-90172727(+)$1	270	157	197	12.2971
dd[ccc"""ccc!!ddddmmmmdddd333ccc333ccc]d	chr6:48036284-48036526(-)$1	242	92	132	17.8711
fffff####a[bb[ddddllldddd]bba22ffffff]cc	chr4:1217192-1217468(-)$1	276	65	105	12.6173
dddd[eeeee"""eeeeemmmmeeeee333eeeee]dddd	chr16:29818307-29818552(-)$1	245	7	47	14.1658
dddd!!cccccc!!ddddmmmmdddd]ccc333ccc22dd	chr9:116918119-116918395(+)$1	276	64	104	15.7557
c[bb[ccc$$$$$cccoooooocccccc22bbccc]bb22	chr16:29817823-29818170(-)$1	347	125	165	12.5106
eeeee[a[ccc"""ddddnnnnndddd333ccc]a]eeee	chr19:59073428-59073678(+)$1	250	29	69	16.2966
bb[a[dddd[a[a[ddddmmmmddddaa]dddd]a]bb22	chr19:13054548-13054777(+)$1	229	166	206	14.4910
[dddddddd!!bb[ddddmmmmdddd]bb22dddd22ddd	chr21:47565680-47565899(-)$1	219	112	152	13.3426
""a[ggggggg"""ddddmmmmdddd4444ggggggg]a3	chr10:91404790-91405047(-)$1	257	16	56	16.9863
!!ffffffccc"""ddddllldddd]ccc]ffffff22dd	chr14:23991564-23991835(+)$1	271	59	99	13.2398
eeee[a!!ccc!!eeeeemmmmeeeee22ccc22a]eeee	chr11:2154306-2154511(-)$1	205	9	49	15.7132
=======[ccc[a[ddddmmmmdddd]accc=========	chr7:100285138-100285405(-)$1	267	108	148	17.3725
ffffff"""dddd!!cccmmmmccc333dddd333fffff	chr1:38273938-38274197(+)$1	259	146	186	13.0508
iiiiiii[bb[eeeeeooooooeeeee333bb22iiiiii	chr11:63884862-63885119(-)$1	257	16	56	15.1322
cdddddddd$$$$$ddddmmmmdddddddd]dddd]ccc]	chr11:61197165-61197469(-)$1	304	66	106	13.3260
hhhhhh!!ccc[ddddooooooddddccc4444hhhhhhh	chr6:33178889-33179179(+)$1	290	184	224	12.7867
[dddddddd!!bb[ddddmmmmdddd]bb22dddd22ddd	chr21:47565669-47565880(-)$1	211	93	133	13.3426
iii[a[ccc####a[ccclllccc]a4444ccc]a]iiii	chr16:431635-431933(-)$1	298	47	87	15.9538
ggggg[dddd[a!!ddddmmmmdddd22addddggggggg	chr22:51153099-51153424(+)$1	325	14	54	15.9232
a[==========!!ddddmmmmdddd4444==========	chr19:38876321-38876636(+)$1	315	192	232	18.6097
cc"""ccc!!eeeeeooooooeeeee4444ccc4444ccc	chr11:2154676-2154880(-)$1	204	150	190	14.5058
iiiii[ggggggg"""bbmmmmbb4444gggggggiiiii	chr16:848551-848832(+)$1	281	150	190	12.8884
iiiiiii[dddd!!cccooooooccc333ddddiiiiiii	chr17:41622773-41623044(+)$1	271	26	66	15.6672
eeee[a!!ccc!!eeeeemmmmeeeee22ccc22a]eeee	chr11:2154311-2154529(-)$1	218	27	67	15.7132
d####ccc!!eeeeeooooooeeeee4444ccc4444ddd	chr11:2154646-2154848(-)$1	202	118	158	14.1146
eeee[a!!ccc!!eeeeemmmmeeeee22ccc22a]eeee	chr11:2154342-2154547(-)$1	205	45	85	15.7132
eeeee[a[dddd!!ddddmmmmdddd22dddd22a]eeee	chr17:48546066-48546341(+)$1	275	116	156	15.7682
eeeeea!!a!!bb"""ccclllccc22bb22a22a]eeee	chr17:78178894-78179161(-)$1	267	118	158	12.3414
ddd[bb[dddd[a[ddddllldddd]a]dddd]bb]dddd	chr4:667804-668112(+)$1	308	91	131	13.1231
b[dddddddd[a!!ddddnnnnndddd22adddd]dddd]	chr11:2156570-2156779(-)$1	209	41	81	13.1709
======!!bb[a[ddddoooooodddd]a]bb]=======	chr6:48036237-48036484(-)$1	247	119	159	16.1388
eeee[a!!ccc!!eeeeemmmmeeeee22ccc22a]eeee	chr11:2154350-2154553(-)$1	203	51	91	15.7132
ff####a[ccc"""ddddmmmmddddccc]a22ffffff2	chr8:145737987-145738231(+)$1	244	182	222	15.4073
iiiiiiiidddd[cccoooooocccdddd]iiiiiiiiih	chr16:2028956-2029204(+)$1	248	170	210	13.5566
!!a[bb[dddd####cccnnnnnccc333dddd]bba22c	chr12:122185998-122186340(+)$1	342	133	173	12.6420
cc"""bb[dddd!!ddddmmmmdddd]dddd22bb333cc	chr1:1363011-1363242(+)$1	231	41	81	15.1122
ffff!!ccc!!bb[ddddllldddd]bbccc]ffffff22	chr2:231902416-231902702(+)$1	286	37	77	12.4612
dddd[eeeee"""eeeeemmmmeeeee333eeeee]dddd	chr16:29818371-29818613(-)$1	242	68	108	14.1658
a!!bb[a!!ccc[eeeeemmmmeeeee]ccc22a]bb22a	chr21:47565633-47565869(-)$1	236	104	144	13.3186
ccc"""ccc!!eeeeeooooooeeeee4444ccc4444cc	chr11:2154651-2154857(-)$1	206	126	166	15.3749
b[bb!!ccc[ccc!!cccmmmmccc333ccc22ccc22bb	chr3:52567648-52567901(-)$1	253	50	90	13.5253
"""dddd"""a[a[bboooooobb]a]a333dddd333cc	chr1:36788393-36788683(+)$1	290	119	159	13.8311
b[dddddddd[a!!ddddnnnnndddd22adddd]dddd]	chr11:2156528-2156770(-)$1	242	32	72	13.1709
============"""bboooooobb]=============:	chr11:63883600-63883866(-)$1	266	89	129	13.5011
iiiii"""bb####ddddoooooodddd22bb333iiiii	chr16:723884-724205(+)$1	321	263	303	16.2535
ggggg####ffffffddddllldddd]ffffff333gggg	chr7:65338182-65338467(+)$1	285	220	260	12.6308
ee[bb[bb[a[cccddddmmmmdddd22ccc]a]bbbb]e	chr8:25315659-25315948(-)$1	289	178	218	13.5811
iiiiiiiidddd[cccoooooocccdddd]iiiiiiiiih	chr16:2029113-2029369(+)$1	256	13	53	13.5566
c[==============[aooooooa]==============	chr12:123464867-123465168(+)$1	301	87	127	14.4782
!!bb[eeeee[bbddddnnnnndddd333bb]eeeee]bb	chr22:37904893-37905151(-)$1	258	24	64	11.7592
ddd[bbbb"""bb[ddddmmmmddddbb22bb]bb]dddd	chr13:113761040-113761296(+)$1	256	162	202	13.4506
=[ccc[bb"""a[ddddoooooodddd]a22bb]ccc===	chr2:242447738-242447989(-)$1	251	86	126	15.0160
cc"""ccc!!eeeeeooooooeeeee4444ccc4444ccc	chr11:2154657-2154862(-)$1	205	132	172	14.5058

#otherMatches

#Seq PSSM
AGGGGAGGAGGGAGGGGCGCCAGCACCUGAUGAUCGCCUA	chr19:55998119-55998406(+)$1	287	227	267	12.6154
CCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCGGG	chr11:2154680-2154892(-)$1	212	162	202	14.5058
GCUGCAGGAGCAGCUGCAUGUUCUGCUCGUGCUCCUUCUG	chr15:90172457-90172727(+)$1	270	157	197	12.2971
gggaugggggagaacgggguagCCCGGCGCUUACACAUGU	chr6:48036284-48036526(-)$1	242	92	132	17.8711
CCCCAGAUCGCGGGUUCCUCAGGAGGCCCCAUGGGGAUGC	chr4:1217192-1217468(-)$1	276	65	105	12.6173
ccucggccgcgggcgccgacacuggcggggguggcggagg	chr16:29818307-29818552(-)$1	245	7	47	14.1658
GCCCACACUUGCCCCCCGGGCUCGGGAGCAUGAAGUAGGG	chr9:116918119-116918395(+)$1	276	64	104	15.7557
GUGCAAGGAAACACCGGGAACAUGGCCUCGGCCGCAGCGG	chr16:29817823-29818170(-)$1	347	125	165	12.5106
CGCUGGUGCUGAAUGAGCUUGGUGCUCUGGUGGAAGCGGC	chr19:59073428-59073678(+)$1	250	29	69	16.2966
GGACGAGCUGUAGAGAGGCCUGCCUCCAGGGCUGGACUGA	chr19:13054548-13054777(+)$1	229	166	206	14.4910
GUGCCCGCUCUGCGGCCCCcgggggcggcucgguggcggc	chr21:47565680-47565899(-)$1	219	112	152	13.3426
GGCAGGACUGGGCAUGCUCAGUGGCGGGGACCAGUCUGGG	chr10:91404790-91405047(-)$1	257	16	56	16.9863
AGGCAGUUCAGGAGGCUUUGGAGGUGCUGUGGCUGUGGGC	chr14:23991564-23991835(+)$1	271	59	99	13.2398
GAAGAGCGUGGAGAGCAGGCACCUGCUGACCAGCCCCUUC	chr11:2154306-2154511(-)$1	205	9	49	15.7132
GGGGGUGGAGGUGGUUGGGUGCCUGGGUCCUCACUCCCGC	chr7:100285138-100285405(-)$1	267	108	148	17.3725
GGGCCCGGGCUCAGACUGGUCACGGGGGUGAGAGGGGGCC	chr1:38273938-38274197(+)$1	259	146	186	13.0508
CACGUGAUGCGGAUGGAGUCUGCCGUCAGGGCCUUCACGU	chr11:63884862-63885119(-)$1	257	16	56	15.1322
GCCGCCGCCAUAUUCCCGGUAACGGGGGCGCGCGGUCGGG	chr11:61197165-61197469(-)$1	304	66	106	13.3260
GCUCCCAAGCGACCCCGUGGAGGGGGCGCAGGGGGGAGCA	chr6:33178889-33179179(+)$1	290	184	224	12.7867
GUGCCCGCUCUGCGGCCCCcgggggcggcucgguggcggc	chr21:47565669-47565880(-)$1	211	93	133	13.3426
cgggcggcggcgggggccggcggcgCgggacgcgggccgg	chr16:431635-431933(-)$1	298	47	87	15.9538
UUAAGUGAGGUCCACAGGGUCACCUGGAGUCUCCUUGAGG	chr22:51153099-51153424(+)$1	325	14	54	15.9232
ggagccaccggcagcggcguuggcuggagcgcugguggcu	chr19:38876321-38876636(+)$1	315	192	232	18.6097
CCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCGGG	chr11:2154676-2154880(-)$1	204	150	190	14.5058
GGGGCCGGGUGCGGGGCUCACAGGAUGGUGCAUUUGCCCU	chr16:848551-848832(+)$1	281	150	190	12.8884
GGGUCCUCGGGUGACUCAGGGGCGGGGCAGCCCAGGACUC	chr17:41622773-41623044(+)$1	271	26	66	15.6672
GAAGAGCGUGGAGAGCAGGCACCUGCUGACCAGCCCCUUC	chr11:2154311-2154529(-)$1	218	27	67	15.7132
CCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCGGG	chr11:2154646-2154848(-)$1	202	118	158	14.1146
GAAGAGCGUGGAGAGCAGGCACCUGCUGACCAGCCCCUUC	chr11:2154342-2154547(-)$1	205	45	85	15.7132
CGCCUGGGGCCGGGGCUGGGGGCAGCAGCGGCGGCGGGGC	chr17:48546066-48546341(+)$1	275	116	156	15.7682
agguggaagggguagagggaUUCCCAGGCAACAGCAUACC	chr17:78178894-78179161(-)$1	267	118	158	12.3414
aucaugggggcgggggccgggggucgcagcccgcgggguc	chr4:667804-668112(+)$1	308	91	131	13.1231
GGGAAGUCGAUGCUGGUGCUUCUCACCUUCUUGGCCUUCG	chr11:2156570-2156779(-)$1	209	41	81	13.1709
GCCUGCGAGCUGGAUCUGGUGGAGGAUGCUGCGGCAGGUG	chr6:48036237-48036484(-)$1	247	119	159	16.1388
GAAGAGCGUGGAGAGCAGGCACCUGCUGACCAGCCCCUUC	chr11:2154350-2154553(-)$1	203	51	91	15.7132
GGCUCAGCGGACGCGGGGACAGCCCCUCCACACCCCUGUG	chr8:145737987-145738231(+)$1	244	182	222	15.4073
CCAGGGCCCUGCGUGUGACGGUGCAGCAGCGGCUCUGGAU	chr16:2028956-2029204(+)$1	248	170	210	13.5566
ggCACUGGGGUAGAAGGUGGGAGGCUGGGGCCCGGGGAGU	chr12:122185998-122186340(+)$1	342	133	173	12.6420
CGCCCGCCUAGCCCGGCGCCUCCGCCCGCUGCUGCCUCCG	chr1:1363011-1363242(+)$1	231	41	81	15.1122
GCCGGAGCCAGGCGCGGCCAAgccgggcggcgcggcggca	chr2:231902416-231902702(+)$1	286	37	77	12.4612
ccucggccgcgggcgccgacacuggcggggguggcggagg	chr16:29818371-29818613(-)$1	242	68	108	14.1658
gggcggcucgguggcggcggccgcugcggccauggugagc	chr21:47565633-47565869(-)$1	236	104	144	13.3186
CCCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCGG	chr11:2154651-2154857(-)$1	206	126	166	15.3749
CACGAGGCCACCGUggcgggcgcgcagucggagggcggcg	chr3:52567648-52567901(-)$1	253	50	90	13.5253
GAAGGGGAUGGUGGUCAGGGAAGGGUUCAGGCCCCCAGUC	chr1:36788393-36788683(+)$1	290	119	159	13.8311
GGGAAGUCGAUGCUGGUGCUUCUCACCUUCUUGGCCUUCG	chr11:2156528-2156770(-)$1	242	32	72	13.1709
guggugguggcaguggcgguggggugUGCCACCACCAUGG	chr11:63883600-63883866(-)$1	266	89	129	13.5011
GACAACUUGCUUUGAUUCAACCUAGAAUGUGUUGUUUGUC	chr16:723884-724205(+)$1	321	263	303	16.2535
GCGGGUGGCCCGGUAUGCAGUGUGCGCUGCCGGAAUCCUG	chr7:65338182-65338467(+)$1	285	220	260	12.6308
GCAGCGCGAUGAGGCGGGUGACCCUGUUCCUGAACGGCAG	chr8:25315659-25315948(-)$1	289	178	218	13.5811
CCAGGGCCCUGCGUGUGACGGUGCAGCAGCGGCUCUGGAU	chr16:2029113-2029369(+)$1	256	13	53	13.5566
CGGGGAGGAGGGCGGCGCGCGCGAGGGUCGCCUUCUUCCC	chr12:123464867-123465168(+)$1	301	87	127	14.4782
AAGAUCUUGGGCCCAGGGUCUACCUGUAUGGGCCAGGCUC	chr22:37904893-37905151(-)$1	258	24	64	11.7592
UGGAAGCCGGGGCCUCACAGAGGUGAGCAGGGACUGCCAC	chr13:113761040-113761296(+)$1	256	162	202	13.4506
GCGCUGCAgagcgggccgggggaggccgggauggagcccc	chr2:242447738-242447989(-)$1	251	86	126	15.0160
CCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCGGG	chr11:2154657-2154862(-)$1	205	132	172	14.5058

#DB
(((((.((..(..(((((....)).)))..)..)).))).	chr19:55998119-55998406(+)$1	1	227	267	12.6154
((...(((..(((((......)))))....)))....)))	chr11:2154680-2154892(-)$1	1	162	202	14.5058
((.(((((((((...(((.....)))...))))))...))	chr15:90172457-90172727(+)$1	1	157	197	12.2971
((.(((...(((..((((....))))...)))...))).)	chr6:48036284-48036526(-)$1	1	92	132	17.8711
(((((....(.((.((((...)))).)))..)))))).))	chr4:1217192-1217468(-)$1	1	65	105	12.6173
((((.(((((...(((((....)))))...))))).))))	chr16:29818307-29818552(-)$1	1	7	47	14.1658
((((..((((((..((((....)))).)))...)))..))	chr9:116918119-116918395(+)$1	1	64	104	15.7557
(.((.(((.....(((......))))))..))))).))..	chr16:29817823-29818170(-)$1	1	125	165	12.5106
(((((.(.(((...((((.....))))...))).).))))	chr19:59073428-59073678(+)$1	1	29	69	16.2966
((.(.((((.(.(.((((....)))))).)))).).))..	chr19:13054548-13054777(+)$1	1	166	206	14.4910
.((((((((..((.((((....)))).))..))))..)))	chr21:47565680-47565899(-)$1	1	112	152	13.3426
..(.(((((((...((((....))))....))))))).).	chr10:91404790-91405047(-)$1	1	16	56	16.9863
..(((((((((...((((...)))).))).))))))..))	chr14:23991564-23991835(+)$1	1	59	99	13.2398
((((.(..(((..(((((....)))))..)))..).))))	chr11:2154306-2154511(-)$1	1	9	49	15.7132
(((((((.(((.(.((((....)))).)))))))))))))	chr7:100285138-100285405(-)$1	1	108	148	17.3725
((((((...((((..(((....)))...))))...)))))	chr1:38273938-38274197(+)$1	1	146	186	13.0508
(((((((.((.(((((......)))))...))..))))))	chr11:63884862-63885119(-)$1	1	16	56	15.1322
(((((((((.....((((....)))))))).)))).))).	chr11:61197165-61197469(-)$1	1	66	106	13.3260
((((((..(((.((((......)))))))....)))))))	chr6:33178889-33179179(+)$1	1	184	224	12.7867
.((((((((..((.((((....)))).))..))))..)))	chr21:47565669-47565880(-)$1	1	93	133	13.3426
(((.(.(((....(.(((...))).)....))).).))))	chr16:431635-431933(-)$1	1	47	87	15.9538
(((((.((((.(..((((....))))..))))))))))))	chr22:51153099-51153424(+)$1	1	14	54	15.9232
(.((((((((((..((((....))))....))))))))))	chr19:38876321-38876636(+)$1	1	192	232	18.6097
((...(((..(((((......)))))....)))....)))	chr11:2154676-2154880(-)$1	1	150	190	14.5058
(((((.(((((((...((....))....))))))))))))	chr16:848551-848832(+)$1	1	150	190	12.8884
(((((((.((((..(((......)))...)))))))))))	chr17:41622773-41623044(+)$1	1	26	66	15.6672
((((.(..(((..(((((....)))))..)))..).))))	chr11:2154311-2154529(-)$1	1	27	67	15.7132
(....(((..(((((......)))))....)))....)))	chr11:2154646-2154848(-)$1	1	118	158	14.1146
((((.(..(((..(((((....)))))..)))..).))))	chr11:2154342-2154547(-)$1	1	45	85	15.7132
(((((.(.((((..((((....))))..))))..).))))	chr17:48546066-48546341(+)$1	1	116	156	15.7682
((((((..(..((...(((...)))..))..)..).))))	chr17:78178894-78179161(-)$1	1	118	158	12.3414
(((.((.((((.(.((((...)))).).)))).)).))))	chr4:667804-668112(+)$1	1	91	131	13.1231
(.((((((((.(..((((.....))))..))))).)))).	chr11:2156570-2156779(-)$1	1	41	81	13.1709
((((((..((.(.((((......)))).).)).)))))))	chr6:48036237-48036484(-)$1	1	119	159	16.1388
((((.(..(((..(((((....)))))..)))..).))))	chr11:2154350-2154553(-)$1	1	51	91	15.7132
((....(.(((...((((....))))))).)..)))))).	chr8:145737987-145738231(+)$1	1	182	222	15.4073
((((((((((((.(((......))))))).))))))))))	chr16:2028956-2029204(+)$1	1	170	210	13.5566
..(.((.((((....(((.....)))...)))).)))..)	chr12:122185998-122186340(+)$1	1	133	173	12.6420
((...((.((((..((((....)))).))))..))...))	chr1:1363011-1363242(+)$1	1	41	81	15.1122
((((..(((..((.((((...)))).))))).))))))..	chr2:231902416-231902702(+)$1	1	37	77	12.4612
((((.(((((...(((((....)))))...))))).))))	chr16:29818371-29818613(-)$1	1	68	108	14.1658
(..((.(..(((.(((((....))))).)))..).))..)	chr21:47565633-47565869(-)$1	1	104	144	13.3186
(((...(((..(((((......)))))....)))....))	chr11:2154651-2154857(-)$1	1	126	166	15.3749
(.((..(((.(((..(((....)))...)))..)))..))	chr3:52567648-52567901(-)$1	1	50	90	13.5253
...((((...(.(.((......)).).)...))))...))	chr1:36788393-36788683(+)$1	1	119	159	13.8311
(.((((((((.(..((((.....))))..))))).)))).	chr11:2156528-2156770(-)$1	1	32	72	13.1709
((((((((((((...((......)).))))))))))))).	chr11:63883600-63883866(-)$1	1	89	129	13.5011
(((((...((....((((......))))..))...)))))	chr16:723884-724205(+)$1	1	263	303	16.2535
(((((....((((((((((...)))).))))))...))))	chr7:65338182-65338467(+)$1	1	220	260	12.6308
((.((.((.(.(((((((....))))..))).).)))).)	chr8:25315659-25315948(-)$1	1	178	218	13.5811
((((((((((((.(((......))))))).))))))))))	chr16:2029113-2029369(+)$1	1	13	53	13.5566
(.((((((((((((((.(......).))))))))))))))	chr12:123464867-123465168(+)$1	1	87	127	14.4782
..((.(((((.((((((.....))))...)).))))).))	chr22:37904893-37905151(-)$1	1	24	64	11.7592
(((.((((...((.((((....))))))..)).)).))))	chr13:113761040-113761296(+)$1	1	162	202	13.4506
(.(((.((...(.((((......)))).)..)).))))))	chr2:242447738-242447989(-)$1	1	86	126	15.0160
((...(((..(((((......)))))....)))....)))	chr11:2154657-2154862(-)$1	1	132	172	14.5058

#PSSM
e : 0.16	c : 0.14	d : 0.12	i : 0.12	f : 0.07	b : 0.07	= : 0.07	! : 0.05	h : 0.03	[ : 0.03	" : 0.03	g : 0.03	a : 0.03	
e : 0.16	d : 0.16	[ : 0.12	i : 0.12	c : 0.08	f : 0.07	! : 0.07	= : 0.05	h : 0.03	" : 0.03	g : 0.03	b : 0.01	# : 0.01	
d : 0.17	e : 0.12	i : 0.12	" : 0.08	= : 0.08	[ : 0.07	f : 0.07	c : 0.05	b : 0.05	a : 0.03	g : 0.03	# : 0.03	h : 0.01	! : 0.01	
d : 0.16	e : 0.12	i : 0.10	" : 0.08	b : 0.08	[ : 0.08	= : 0.08	c : 0.07	f : 0.07	g : 0.03	# : 0.03	a : 0.01	h : 0.01	
[ : 0.16	d : 0.10	i : 0.10	" : 0.08	= : 0.08	b : 0.08	c : 0.07	f : 0.05	! : 0.05	e : 0.05	g : 0.05	# : 0.03	h : 0.01	a : 0.01	
[ : 0.16	c : 0.12	d : 0.12	a : 0.08	= : 0.08	i : 0.07	b : 0.07	# : 0.05	e : 0.05	! : 0.05	f : 0.03	" : 0.03	g : 0.01	h : 0.01	
c : 0.17	d : 0.14	! : 0.12	b : 0.08	a : 0.07	= : 0.07	i : 0.07	" : 0.05	e : 0.05	f : 0.03	# : 0.03	g : 0.03	[ : 0.03	
c : 0.17	d : 0.16	! : 0.14	[ : 0.12	b : 0.07	" : 0.07	e : 0.05	= : 0.05	f : 0.03	# : 0.03	g : 0.03	i : 0.03	
c : 0.24	d : 0.24	! : 0.10	" : 0.08	e : 0.05	b : 0.05	= : 0.05	# : 0.03	g : 0.03	f : 0.01	$ : 0.01	a : 0.01	[ : 0.01	
c : 0.21	d : 0.19	! : 0.17	e : 0.05	b : 0.05	= : 0.05	" : 0.05	f : 0.03	a : 0.03	$ : 0.03	[ : 0.03	g : 0.03	# : 0.01	
c : 0.23	[ : 0.14	d : 0.14	! : 0.08	e : 0.07	" : 0.07	a : 0.05	= : 0.05	f : 0.03	$ : 0.03	g : 0.03	# : 0.03	
b : 0.12	e : 0.10	" : 0.10	d : 0.10	! : 0.08	c : 0.08	[ : 0.08	a : 0.08	# : 0.05	= : 0.05	f : 0.03	$ : 0.03	g : 0.01	
! : 0.24	" : 0.14	b : 0.12	e : 0.10	[ : 0.08	a : 0.07	# : 0.05	$ : 0.03	d : 0.03	c : 0.03	g : 0.01	f : 0.01	= : 0.01	
e : 0.23	! : 0.19	[ : 0.16	" : 0.14	c : 0.08	d : 0.07	# : 0.03	$ : 0.01	a : 0.01	f : 0.01	= : 0.01	
d : 0.48	e : 0.23	c : 0.08	" : 0.07	! : 0.03	[ : 0.01	# : 0.01	b : 0.01	f : 0.01	= : 0.01	
d : 0.49	c : 0.17	e : 0.16	o : 0.07	" : 0.03	b : 0.03	= : 0.01	
d : 0.48	o : 0.19	c : 0.12	e : 0.12	b : 0.05	[ : 0.01	
d : 0.42	o : 0.26	e : 0.12	c : 0.10	b : 0.03	a : 0.01	n : 0.01	
m : 0.46	o : 0.30	n : 0.10	l : 0.08	c : 0.01	d : 0.01	
m : 0.46	o : 0.30	l : 0.12	n : 0.10	
m : 0.46	o : 0.30	l : 0.12	n : 0.10	
m : 0.46	o : 0.23	n : 0.10	e : 0.07	d : 0.07	l : 0.03	c : 0.01	
d : 0.39	e : 0.23	c : 0.12	o : 0.10	n : 0.08	b : 0.05	
d : 0.48	e : 0.23	c : 0.17	b : 0.07	o : 0.03	
d : 0.49	e : 0.23	c : 0.16	] : 0.05	4 : 0.01	b : 0.01	a : 0.01	
d : 0.46	e : 0.23	] : 0.10	c : 0.08	3 : 0.03	a : 0.03	4 : 0.01	2 : 0.01	
e : 0.16	d : 0.16	4 : 0.14	3 : 0.12	] : 0.12	c : 0.08	2 : 0.07	b : 0.05	a : 0.03	= : 0.03	
3 : 0.19	4 : 0.16	2 : 0.16	c : 0.10	b : 0.10	d : 0.08	] : 0.07	a : 0.05	= : 0.03	f : 0.01	
2 : 0.17	3 : 0.17	c : 0.16	4 : 0.14	d : 0.12	a : 0.07	b : 0.05	= : 0.03	] : 0.01	g : 0.01	f : 0.01	
c : 0.19	2 : 0.16	4 : 0.16	d : 0.16	3 : 0.08	] : 0.08	f : 0.03	a : 0.03	= : 0.03	g : 0.01	b : 0.01	
c : 0.28	d : 0.17	b : 0.10	2 : 0.08	f : 0.05	= : 0.05	a : 0.03	e : 0.03	3 : 0.03	g : 0.03	4 : 0.03	i : 0.03	] : 0.01	
d : 0.23	c : 0.21	b : 0.10	2 : 0.08	f : 0.07	= : 0.07	] : 0.05	e : 0.03	g : 0.03	i : 0.03	3 : 0.01	4 : 0.01	a : 0.01	
2 : 0.21	d : 0.17	c : 0.14	f : 0.08	3 : 0.07	= : 0.07	e : 0.05	] : 0.05	g : 0.03	i : 0.03	4 : 0.01	a : 0.01	b : 0.01	
2 : 0.12	] : 0.10	d : 0.10	f : 0.08	= : 0.08	b : 0.07	4 : 0.07	3 : 0.07	c : 0.07	e : 0.05	g : 0.05	i : 0.05	h : 0.01	a : 0.01	
a : 0.16	b : 0.10	4 : 0.08	f : 0.08	= : 0.08	3 : 0.07	c : 0.07	d : 0.07	i : 0.07	e : 0.05	g : 0.05	] : 0.05	h : 0.01	
] : 0.28	i : 0.10	4 : 0.08	f : 0.08	= : 0.08	3 : 0.07	c : 0.07	b : 0.05	2 : 0.03	g : 0.03	d : 0.03	h : 0.01	e : 0.01	
e : 0.14	i : 0.12	d : 0.10	4 : 0.08	2 : 0.08	= : 0.08	c : 0.07	f : 0.07	b : 0.07	3 : 0.05	g : 0.05	h : 0.01	a : 0.01	
d : 0.16	e : 0.12	i : 0.12	c : 0.10	= : 0.10	2 : 0.08	3 : 0.05	] : 0.05	b : 0.05	f : 0.05	g : 0.03	h : 0.01	4 : 0.01	
d : 0.19	c : 0.17	e : 0.12	i : 0.12	= : 0.10	2 : 0.08	] : 0.03	f : 0.03	g : 0.03	b : 0.03	a : 0.01	h : 0.01	
d : 0.17	c : 0.16	e : 0.14	= : 0.08	i : 0.08	] : 0.07	2 : 0.07	h : 0.05	g : 0.03	b : 0.03	3 : 0.01	f : 0.01	a : 0.01	: : 0.01	

#score	804.0652081895134
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_CDS_m2_run1.txt

#BEAR
dddd[eeeee!!cccmmmmccc]eeeeedddd	chr7:100841518-100841820(-)$1	302	171	203	12.3462
eee####gggggggammmma]ggggggg4444	chr10:103603174-103603437(-)$1	263	26	58	11.5901
""eeeee[bb!!cccmmmmccc22bbeeeee3	chr7:150777594-150777900(-)$1	306	243	275	12.4326
eee:============lll============:	chr14:103576580-103576828(+)$1	248	213	245	8.7254
deeeee[ccc[acccmmmmccc]a]ccc]eee	chr16:2029107-2029382(+)$1	275	226	258	14.0708
[ccc!!ccc[eeeeemmmmeeeee]ccc4444	chr16:67984748-67984966(-)$1	218	100	132	11.1934
ccc!!eeeeeeeeeemmmmeeeee]eeeee22	chr20:43031169-43031479(+)$1	310	194	226	10.0700
hhhh[dddd[bb[ccclllccc4444bb]ddd	chr20:35491309-35491602(-)$1	293	130	162	9.1035
ccc[dddd####cccmmmmccc4444dddd]c	chr17:30264218-30264507(+)$1	289	66	98	12.7712
ddd[a!!dddd!!ccclllccc22dddd]a]d	chr20:57267815-57268088(+)$1	273	35	67	10.0876
[ccc!!dddd!!cccmmmmcccdddd4444cc	chr1:155939216-155939467(-)$1	251	150	182	12.6573
[eeeee[ccc!!cccmmmmccc]ccc22eeee	chr3:98451573-98451827(+)$1	254	192	224	13.9972
dd[eeeee[ddddbbmmmmbb]dddd]eeeee	chr1:28845117-28845400(+)$1	283	77	109	11.1598
bffffff"""ccc[ammmma]ccc]ffffff]	chr1:1355866-1356128(-)$1	262	100	132	10.8926
dddd!!eeeeeddddmmmmdddd]eeeee]dd	chr20:3451893-3452150(+)$1	257	161	193	10.5602
hh$$$$$ccc[ddddmmmmddddccc333hhh	chr9:99212475-99212709(+)$1	234	84	116	10.0878
eee!!ffffff[cccmmmmccc]ffffff22e	chr1:6505670-6505922(-)$1	252	176	208	11.8468
eeeeebb[gggggggmmmmgggggggbb]eee	chr1:2160041-2160332(+)$1	291	170	202	10.7967
cca[ffffffbbcccmmmmccc]bb]ffffff	chr15:80215308-80215595(-)$1	287	138	170	10.8856
ggggeeeee"""cccmmmmccc4444eeeeec	chr11:66626979-66627226(-)$1	247	29	61	13.6652
a[bb!!ccc[bb[bbmmmmbb]bb]ccc22bb	chr1:27022998-27023296(+)$1	298	3	35	10.1622
FFFeeeee[ccc[bbmmmmbb22ccc]eeeee	chr10:31609023-31609265(+)$1	242	133	165	10.9407
eeeeggggggg[cccmmmmccc]ggggggg55	chr19:42401278-42401569(+)$1	291	213	245	11.1698
b[ccc!!bb####bbmmmmbb333bb]ccc]b	chr1:27022891-27023145(+)$1	254	191	223	11.7683
ee[ccceeeee[cccmmmmccc]eeeee22cc	chr14:103576193-103576473(+)$1	280	151	183	11.9757
"""ccc[ccc[bb[ammmmabb]ccccccfff	chr11:639275-639568(+)$1	293	159	191	11.4827
b[ccc[ccc!!bboooooobb22ccc]ccc]b	chr9:80646047-80646345(-)$1	298	217	249	9.3758
d[ccc[dddd[ddddmmmmdddd]dddd]ccc	chr19:1474682-1474941(-)$1	259	194	226	10.7125
fff!!eeeee!!cccmmmmccc22eeeee]ff	chr17:73823392-73823688(-)$1	296	256	288	12.8110
[eeeee"""ccccccmmmmccc]ccc]eeeee	chr17:76201421-76201657(+)$1	236	149	181	13.7090
ffffff####eeeeemmmmeeeee333fffff	chr3:142443399-142443644(+)$1	245	133	165	10.3483
[ccc[bb[dddd[bbmmmmbbdddd]bb]ccc	chr3:52567648-52567895(-)$1	247	154	186	10.4408
[eeeee[bb!!bbbbmmmmbb]bb22bb]eee	chr7:5460710-5460980(-)$1	270	169	201	11.0503
hhhhhhhh[ccccccmmmmccc]ccchhhhhh	chr19:14272231-14272572(+)$1	341	36	68	10.1957
eeee[ccc"""ddddmmmmdddd333ccceee	chr8:81398834-81399146(+)$1	312	164	196	12.7732
ffffff####eeeeemmmmeeeee333fffff	chr3:142443302-142443599(+)$1	297	230	262	10.3483
ddd[eeeee!!a[bbnnnnnbb]a]eeeeedd	chr17:79972815-79973074(+)$1	259	212	244	8.9041
ddddffffff"""bbmmmmbb333ffffff]d	chr16:75298068-75298374(-)$1	306	44	76	11.4852
##eeeeeccc[ddddlllddddccc22eeeee	chr17:46985945-46986208(+)$1	263	190	222	9.3389
eeee!!bb[a[ddddmmmmdddd]a]bb]eee	chr7:150777704-150777985(-)$1	281	239	271	11.7595
ffffbb[a!!cccooooooccc22abb22fff	chr2:219264947-219265181(+)$1	234	144	176	8.5681
dd[bbeeeeebb[bbmmmmbb]bb]eeeee]b	chr17:74533295-74533599(-)$1	304	179	211	9.8940
!!bb[ccc[a"""bbmmmmbb22a]ccc]bb]	chr1:27022945-27023198(+)$1	253	84	116	11.9938
ffffff"""dddd[ammmma]dddd4444fff	chr16:29998086-29998350(+)$1	264	19	51	10.5881
$$$$bb[ccc!!ccclllccc22ccc]bb22e	chr20:62371182-62371517(+)$1	335	248	280	8.9286
eeee####bb!!cccmmmmcccbbeeeee333	chr19:55899432-55899725(+)$1	293	228	260	12.2815
eeee!!ccc!!ddddmmmmdddd22ccc]eee	chr12:124873017-124873332(-)$1	315	171	203	12.6213
d####ccc"""cccnnnnncccccc333dddd	chr19:58991523-58991791(-)$1	268	4	36	9.5516
[eeeeeccc####bbmmmmbb22ccc22eeee	chr20:62369626-62369881(+)$1	255	173	205	12.8718
e:ccc[bb[bb[cccmmmmccc]bb]bb]ccc	chr4:985882-986170(-)$1	288	226	258	10.5240
ddd[ddddccc[cccmmmmccc]ccc22dddd	chrX:21959250-21959566(+)$1	316	79	111	11.8823

#otherMatches

#Seq PSSM
CAGGACUCUGUCCGGUGAGCCGCCAGAGCCUG	chr7:100841518-100841820(-)$1	302	171	203	12.3462
CCGCCAGGGGGCGCCGUGUGAGCGCCCUAUcc	chr10:103603174-103603437(-)$1	263	26	58	11.5901
UUCGCCGACUCCGCGCCAUCGCAAAGCGGUGC	chr7:150777594-150777900(-)$1	306	243	275	12.4326
CCUAUCGGGCGGGGGGGGGCCUCCCGCCCGAC	chr14:103576580-103576828(+)$1	248	213	245	8.7254
CCGCCCGGUCGCCGUACCUGCGAGGGGCGGGG	chr16:2029107-2029382(+)$1	275	226	258	14.0708
GUGUAUCCUUUCCCAGGCCUGGGGCAGGUGGG	chr16:67984748-67984966(-)$1	218	100	132	11.1934
GGGCAGGCAGCUGGCUGAGGUCAGCCUGCCAC	chr20:43031169-43031479(+)$1	310	194	226	10.0700
CACCGGGGUCCGUGCCAAGGGCCGUCCGCGCU	chr20:35491309-35491602(-)$1	293	130	162	9.1035
GCGGUGGGGGAGGGGGCGGCUCGGGGCCCAGC	chr17:30264218-30264507(+)$1	289	66	98	12.7712
cgggcagggccggggcggugccgaggccgggc	chr20:57267815-57268088(+)$1	273	35	67	10.0876
AGGGACCCAGAACCCAUCCGGGCUGGCUGCCC	chr1:155939216-155939467(-)$1	251	150	182	12.6573
CGGAGCCCGGUGCGCCUCUGCGGUCGUCGCUC	chr3:98451573-98451827(+)$1	254	192	224	13.9972
AUGGUUUUGUCCGGCAUGCGCUUGGAGAAGGC	chr1:28845117-28845400(+)$1	283	77	109	11.1598
ggcggggUUCUGGUCAGUGGUCCACCCCCGCG	chr1:1355866-1356128(-)$1	262	100	132	10.8926
UGUGACCGGCCCUGUGUCAACGGCGGUCGCUG	chr20:3451893-3452150(+)$1	257	161	193	10.5602
GCAUGAAGGGCGCUCUGGGGAGUCCCGUGGCU	chr9:99212475-99212709(+)$1	234	84	116	10.0878
UGCAGCUCUAGCGCUGGAAAGCCCUGGGGAGG	chr1:6505670-6505922(-)$1	252	176	208	11.8468
GCGGCGGCAGGCGGCCGCGGCUGUUUCCAGCC	chr1:2160041-2160332(+)$1	291	170	202	10.7967
ggcggggacgccccggUGGCGGAGGACGUCCC	chr15:80215308-80215595(-)$1	287	138	170	10.8856
GCCGGUGACAAGGCCAGCAGGCAGAGGUCAUA	chr11:66626979-66627226(-)$1	247	29	61	13.6652
gggcgaggcggcggcggcggcagcggcCGAGC	chr1:27022998-27023296(+)$1	298	3	35	10.1622
GGAGCCGCGCGGAUGGGGGCGAGCUGGGCGGC	chr10:31609023-31609265(+)$1	242	133	165	10.9407
UGGGUGGGGGAAGGGCUAGCCCCUCCCCCAUU	chr19:42401278-42401569(+)$1	291	213	245	11.1698
GGGGCCGCCGCAGCCGCUGGGAAAGGAGCUGC	chr1:27022891-27023145(+)$1	254	191	223	11.7683
UGAGUGCCCGCAUGUCUCUGCAGGCGGGACCA	chr14:103576193-103576473(+)$1	280	151	183	11.9757
CCAGGGUGGCGCGUGGCUGCUGAGCCCCCGCC	chr11:639275-639568(+)$1	293	159	191	11.4827
GUGCUGCCUGAGCGAGGAGGCCAAGGAAGCCC	chr9:80646047-80646345(-)$1	298	217	249	9.3758
CACAGUGGCCGUGCUCUGCAGUGGGGCCCCUG	chr19:1474682-1474941(-)$1	259	194	226	10.7125
ACGGAAGCAGAAAGGACAGUUUGGCUGCUGUG	chr17:73823392-73823688(-)$1	296	256	288	12.8110
UCACAGAACGUUGCUCUCCAGCUGACCCUGUG	chr17:76201421-76201657(+)$1	236	149	181	13.7090
UACGCUGAAUGAGAAGCUUUUCUUGCUGGCGU	chr3:142443399-142443644(+)$1	245	133	165	10.3483
gggcugcgggcggccgcucggcgcuggcugcu	chr3:52567648-52567895(-)$1	247	154	186	10.4408
CUGGCCAUGGACAGCCACCGCGUGGGCGCGGC	chr7:5460710-5460980(-)$1	270	169	201	11.0503
CUGGGGCUGUGGCUGGAGGCAGAUCAGGUCCC	chr19:14272231-14272572(+)$1	341	36	68	10.1957
ccgugcgcgagccggggcaccgggcggcggcg	chr8:81398834-81399146(+)$1	312	164	196	12.7732
UACGCUGAAUGAGAAGCUUUUCUUGCUGGCGU	chr3:142443302-142443599(+)$1	297	230	262	10.3483
ACGCUUGCCAGUGGUAGGAGAUGGAGGCGACG	chr17:79972815-79973074(+)$1	259	212	244	8.9041
GCCUCAGGGGACUGGCCAGCCCUGCUCCUGUG	chr16:75298068-75298374(-)$1	306	44	76	11.4852
UGGGACGGCGAGCGCACCGCGCCGCAGUGUCU	chr17:46985945-46986208(+)$1	263	190	222	9.3389
CUGCGGGAGGGCAGCGGGAGCUGGUGUUAGCG	chr7:150777704-150777985(-)$1	281	239	271	11.7595
GUUCGCUCGAGGUGAGGAAACUGAGGCAGGAA	chr2:219264947-219265181(+)$1	234	144	176	8.5681
GGAGGGCUGGGCCCGGGUCCGAGCUCCAGCGC	chr17:74533295-74533599(-)$1	304	179	211	9.8940
GAGCGCGGGGAAAUGAAGGCAGCCGCCGGGCA	chr1:27022945-27023198(+)$1	253	84	116	11.9938
AAGUUUGGGGUCUGCCUGAGGAGAUAGAGGAG	chr16:29998086-29998350(+)$1	264	19	51	10.5881
UCUCGCUGCAAAGAUGGCGUCAGUGCUGCCCA	chr20:62371182-62371517(+)$1	335	248	280	8.9286
GGUGAAGAGGAAGCGGACCCGCCCCACCAAGA	chr19:55899432-55899725(+)$1	293	228	260	12.2815
CUGGGAUUUGAGGCUGGGCAGCUGGGGAGUCG	chr12:124873017-124873332(-)$1	315	171	203	12.6213
GAUGACGAACACUGACUUCCAGUCGAAGCCGC	chr19:58991523-58991791(-)$1	268	4	36	9.5516
GCAGUCCCCAAGAGCCACAGCAGGGGAAGACU	chr20:62369626-62369881(+)$1	255	173	205	12.8718
UUCUGACGGUAGGCACAUGUGCGUGGUGGCAG	chr4:985882-986170(-)$1	288	226	258	10.5240
GGGAGUCCCCGGGCUGCCGGGCGCGGGCGGAC	chrX:21959250-21959566(+)$1	316	79	111	11.8823

#DB
((((.(((((..(((....))).)))))))))	chr7:100841518-100841820(-)$1	1	171	203	12.3462
(((....((((((((....).)))))))....	chr10:103603174-103603437(-)$1	1	26	58	11.5901
..(((((.((..(((....)))..))))))).	chr7:150777594-150777900(-)$1	1	243	275	12.4326
))).((((((((((((...)))))))))))).	chr14:103576580-103576828(+)$1	1	213	245	8.7254
((((((.(((.((((....))).).))).)))	chr16:2029107-2029382(+)$1	1	226	258	14.0708
.(((..(((.(((((....))))).)))....	chr16:67984748-67984966(-)$1	1	100	132	11.1934
(((..((((((((((....))))).)))))..	chr20:43031169-43031479(+)$1	1	194	226	10.0700
((((.((((.((.(((...)))....)).)))	chr20:35491309-35491602(-)$1	1	130	162	9.1035
(((.((((....(((....)))....)))).)	chr17:30264218-30264507(+)$1	1	66	98	12.7712
(((.(..((((..(((...)))..)))).).)	chr20:57267815-57268088(+)$1	1	35	67	10.0876
.(((..((((..(((....)))))))....))	chr1:155939216-155939467(-)$1	1	150	182	12.6573
.(((((.(((..(((....))).)))..))))	chr3:98451573-98451827(+)$1	1	192	224	13.9972
((.(((((.((((((....)).)))).)))))	chr1:28845117-28845400(+)$1	1	77	109	11.1598
(((((((...(((.(....).))).)))))).	chr1:1355866-1356128(-)$1	1	100	132	10.8926
((((..(((((((((....)))).))))).))	chr20:3451893-3452150(+)$1	1	161	193	10.5602
((.....(((.((((....)))))))...)))	chr9:99212475-99212709(+)$1	1	84	116	10.0878
(((..((((((.(((....))).))))))..)	chr1:6505670-6505922(-)$1	1	176	208	11.8468
(((((((.(((((((....))))))))).)))	chr1:2160041-2160332(+)$1	1	170	202	10.7967
(((.(((((((((((....))).)).))))))	chr15:80215308-80215595(-)$1	1	138	170	10.8856
))))(((((...(((....)))....)))))(	chr11:66626979-66627226(-)$1	1	29	61	13.6652
(.((..(((.((.((....)).)).)))..))	chr1:27022998-27023296(+)$1	1	3	35	10.1622
((((((((.(((.((....))..))).)))))	chr10:31609023-31609265(+)$1	1	133	165	10.9407
(((((((((((.(((....))).)))))))..	chr19:42401278-42401569(+)$1	1	213	245	11.1698
(.(((..((....((....))...)).))).)	chr1:27022891-27023145(+)$1	1	191	223	11.7683
((.((((((((.(((....))).)))))..))	chr14:103576193-103576473(+)$1	1	151	183	11.9757
...(((.(((.((.(....))).)))))))))	chr11:639275-639568(+)$1	1	159	191	11.4827
(.(((.(((..((......))..))).))).)	chr9:80646047-80646345(-)$1	1	217	249	9.3758
(.(((.((((.((((....)))).)))).)))	chr19:1474682-1474941(-)$1	1	194	226	10.7125
(((..(((((..(((....)))..))))).))	chr17:73823392-73823688(-)$1	1	256	288	12.8110
.(((((...((((((....))).))).)))))	chr17:76201421-76201657(+)$1	1	149	181	13.7090
((((((....(((((....)))))...)))))	chr3:142443399-142443644(+)$1	1	133	165	10.3483
.(((.((.((((.((....)))))).)).)))	chr3:52567648-52567895(-)$1	1	154	186	10.4408
.(((((.((..((((....)).))..)).)))	chr7:5460710-5460980(-)$1	1	169	201	11.0503
((((((((.((((((....))).)))))))))	chr19:14272231-14272572(+)$1	1	36	68	10.1957
((((.(((...((((....))))...))))))	chr8:81398834-81399146(+)$1	1	164	196	12.7732
((((((....(((((....)))))...)))))	chr3:142443302-142443599(+)$1	1	230	262	10.3483
(((.(((((..(.((.....)).).)))))))	chr17:79972815-79973074(+)$1	1	212	244	8.9041
((((((((((...((....))...)))))).)	chr16:75298068-75298374(-)$1	1	44	76	11.4852
..((((((((.((((...)))))))..)))))	chr17:46985945-46986208(+)$1	1	190	222	9.3389
((((..((.(.((((....)))).).)).)))	chr7:150777704-150777985(-)$1	1	239	271	11.7595
((((((.(..(((......)))..)))..)))	chr2:219264947-219265181(+)$1	1	144	176	8.5681
((.(((((((((.((....)).)).))))).)	chr17:74533295-74533599(-)$1	1	179	211	9.8940
..((.(((.(...((....))..).))).)).	chr1:27022945-27023198(+)$1	1	84	116	11.9938
((((((...((((.(....).))))....)))	chr16:29998086-29998350(+)$1	1	19	51	10.5881
....((.(((..(((...)))..))).))..)	chr20:62371182-62371517(+)$1	1	248	280	8.9286
((((....((..(((....))))))))))...	chr19:55899432-55899725(+)$1	1	228	260	12.2815
((((..(((..((((....))))..))).)))	chr12:124873017-124873332(-)$1	1	171	203	12.6213
(....(((...(((.....))))))...))))	chr19:58991523-58991791(-)$1	1	4	36	9.5516
.((((((((....((....))..)))..))))	chr20:62369626-62369881(+)$1	1	173	205	12.8718
).(((.((.((.(((....))).)).)).)))	chr4:985882-986170(-)$1	1	226	258	10.5240
(((.(((((((.(((....))).)))..))))	chrX:21959250-21959566(+)$1	1	79	111	11.8823

#PSSM
d : 0.21	e : 0.21	[ : 0.13	f : 0.09	c : 0.05	h : 0.05	b : 0.05	" : 0.03	g : 0.01	a : 0.01	F : 0.01	# : 0.01	! : 0.01	$ : 0.01	
e : 0.29	d : 0.15	c : 0.11	f : 0.11	[ : 0.07	h : 0.05	" : 0.03	# : 0.03	g : 0.01	F : 0.01	! : 0.01	$ : 0.01	: : 0.01	
e : 0.31	c : 0.17	d : 0.11	f : 0.11	[ : 0.05	h : 0.03	$ : 0.03	b : 0.03	a : 0.01	g : 0.01	F : 0.01	" : 0.01	# : 0.01	
e : 0.29	c : 0.17	[ : 0.09	f : 0.09	d : 0.05	! : 0.05	b : 0.05	# : 0.03	h : 0.03	$ : 0.03	: : 0.01	g : 0.01	
e : 0.23	! : 0.17	f : 0.11	c : 0.11	[ : 0.09	# : 0.05	b : 0.05	d : 0.03	= : 0.01	a : 0.01	$ : 0.01	g : 0.01	h : 0.01	
e : 0.29	! : 0.15	f : 0.13	c : 0.09	b : 0.07	d : 0.05	[ : 0.05	# : 0.03	= : 0.01	$ : 0.01	g : 0.01	h : 0.01	
e : 0.23	c : 0.15	[ : 0.11	d : 0.09	# : 0.07	f : 0.07	b : 0.07	! : 0.03	" : 0.03	= : 0.01	$ : 0.01	g : 0.01	h : 0.01	
c : 0.27	e : 0.19	d : 0.11	b : 0.07	[ : 0.05	" : 0.05	f : 0.05	# : 0.05	g : 0.03	= : 0.01	h : 0.01	a : 0.01	
c : 0.23	e : 0.15	[ : 0.11	d : 0.09	" : 0.09	b : 0.07	g : 0.05	# : 0.05	f : 0.05	= : 0.01	! : 0.01	
c : 0.19	e : 0.11	d : 0.11	# : 0.09	! : 0.09	" : 0.07	g : 0.05	b : 0.05	[ : 0.05	f : 0.05	a : 0.03	= : 0.01	
! : 0.21	[ : 0.11	e : 0.11	c : 0.11	b : 0.09	" : 0.09	d : 0.07	g : 0.05	# : 0.05	= : 0.01	f : 0.01	
d : 0.19	! : 0.15	b : 0.13	c : 0.11	[ : 0.09	e : 0.07	# : 0.05	" : 0.05	g : 0.03	a : 0.03	= : 0.01	
c : 0.41	d : 0.17	[ : 0.11	e : 0.07	b : 0.05	g : 0.03	# : 0.03	" : 0.03	= : 0.01	! : 0.01	
c : 0.41	b : 0.21	d : 0.13	e : 0.07	[ : 0.05	g : 0.03	o : 0.03	= : 0.01	
c : 0.39	b : 0.21	d : 0.13	a : 0.07	e : 0.07	o : 0.03	= : 0.01	g : 0.01	n : 0.01	
m : 0.82	c : 0.03	o : 0.03	n : 0.03	l : 0.03	= : 0.01	
m : 0.82	l : 0.09	o : 0.03	n : 0.03	
m : 0.82	l : 0.09	o : 0.03	n : 0.03	
m : 0.82	l : 0.05	o : 0.03	n : 0.03	d : 0.01	c : 0.01	
c : 0.43	b : 0.21	d : 0.13	a : 0.07	e : 0.07	= : 0.01	g : 0.01	n : 0.01	
c : 0.43	b : 0.25	d : 0.13	e : 0.07	] : 0.05	= : 0.01	g : 0.01	
c : 0.43	d : 0.17	2 : 0.09	e : 0.07	] : 0.07	g : 0.03	3 : 0.03	b : 0.03	= : 0.01	
] : 0.25	d : 0.19	2 : 0.17	e : 0.07	b : 0.07	4 : 0.05	c : 0.05	g : 0.03	3 : 0.03	= : 0.01	
c : 0.25	e : 0.11	b : 0.11	2 : 0.09	d : 0.07	g : 0.05	a : 0.05	4 : 0.05	] : 0.05	3 : 0.05	= : 0.01	f : 0.01	
c : 0.23	] : 0.15	d : 0.11	e : 0.09	b : 0.07	g : 0.05	4 : 0.05	3 : 0.05	f : 0.03	2 : 0.03	a : 0.03	= : 0.01	
c : 0.29	e : 0.15	4 : 0.07	d : 0.07	] : 0.07	3 : 0.07	g : 0.05	b : 0.05	f : 0.05	2 : 0.03	= : 0.01	
e : 0.19	c : 0.13	b : 0.13	] : 0.11	2 : 0.07	f : 0.07	3 : 0.07	d : 0.05	g : 0.03	4 : 0.03	= : 0.01	h : 0.01	
e : 0.27	c : 0.17	b : 0.13	f : 0.11	2 : 0.07	d : 0.05	g : 0.03	4 : 0.03	3 : 0.03	= : 0.01	h : 0.01	
e : 0.27	] : 0.21	f : 0.11	d : 0.07	4 : 0.07	c : 0.07	2 : 0.05	= : 0.01	3 : 0.01	g : 0.01	h : 0.01	b : 0.01	
e : 0.33	f : 0.15	d : 0.09	c : 0.09	2 : 0.07	4 : 0.05	] : 0.03	h : 0.03	= : 0.01	a : 0.01	g : 0.01	b : 0.01	3 : 0.01	
e : 0.27	f : 0.15	d : 0.11	] : 0.11	c : 0.09	2 : 0.05	4 : 0.03	h : 0.03	b : 0.03	= : 0.01	5 : 0.01	3 : 0.01	
e : 0.27	d : 0.15	c : 0.13	f : 0.13	b : 0.07	4 : 0.03	3 : 0.03	] : 0.03	h : 0.03	: : 0.01	2 : 0.01	5 : 0.01	

#score	569.3997238170392
#seq	51
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_CDS_m2_run1.txt

#BEAR
ggggg[cccmmmmcccggggggg	chr11:62297232-62297514(-)$1	282	240	263	9.9766
!bb"""cccmmmmccc333bb22	chr19:49611445-49611716(+)$1	271	120	143	12.1181
[ccc"""bbmmmmbb333ccc]b	chr17:34171562-34171871(+)$1	309	100	123	11.1231
ee####cccmmmmccc]eeeee4	chr11:62290434-62290675(-)$1	241	69	92	11.1702
cc!!ddddnnnnndddd333ccc	chr9:100774602-100774855(+)$1	253	31	54	7.9431
$$$$$ddddmmmmdddd333hhh	chr9:100773530-100773772(+)$1	242	169	192	10.1025
[ccc[cccooooooccc]ccc]a	chr17:34171875-34172138(+)$1	263	96	119	9.0419
!bb!!ddddmmmmdddd666666	chr4:39699762-39700068(+)$1	306	226	249	9.3598
dddd####aooooooa4444ddd	chr11:62284257-62284578(-)$1	321	125	148	8.7251
dd####cccmmmmccc55555dd	chr10:70101631-70101873(+)$1	242	11	34	9.8715
bb####bboooooobb4444bb:	chr11:35685049-35685307(+)$1	258	11	34	8.1615
gggg"""ccclllccc]gggggg	chr1:150192890-150193164(-)$1	274	86	109	9.0695
=====[abbmmmmbb]a]=====	chr11:62300306-62300605(-)$1	299	127	150	10.3241
fff"""cccmmmmcccffffff:	chr11:62286001-62286236(-)$1	235	129	152	9.4616
ccc[eeeeemmmmeeeee4444c	chr16:28847428-28847693(+)$1	265	31	54	9.0368
[a[a[ddddmmmmddddaa]ddd	chr19:13054502-13054836(+)$1	334	221	244	10.0611
c!!a[ddddmmmmdddd]a6666	chrX:153595032-153595307(-)$1	275	161	184	9.7605
""gggggggmmmmggggggg444	chr11:62284203-62284436(-)$1	233	45	68	9.1794
cc"""acccmmmmccc]a333cc	chr14:23528279-23528616(-)$1	337	300	323	12.7381
"""ddddbbmmmmbb]dddd444	chr11:62297190-62297432(-)$1	242	177	200	8.8222
dd####cccmmmmccc333dddd	chr11:62284904-62285131(-)$1	227	100	123	12.5290
!dddd[cccmmmmccc333dddd	chr11:62300880-62301181(-)$1	301	151	174	10.8850
[ccc[ddddmmmmdddd]ccc]a	chr17:34171748-34172015(+)$1	267	172	195	10.3908
=====[abbmmmmbb]a]=====	chr11:62300405-62300651(-)$1	246	173	196	10.3241
eee####ccclllccceeeee]c	chr11:62298387-62298640(-)$1	253	221	244	8.6243
gggg!!cccmmmmccc4444ggg	chr10:70101465-70101709(+)$1	244	184	207	12.3287

#otherMatches

#Seq PSSM
CUUGGUGUUUCAGGACCCAAGGU	chr11:62297232-62297514(-)$1	282	240	263	9.9766
ggugggggcgguggccaggacAA	chr19:49611445-49611716(+)$1	271	120	143	12.1181
ggcuaugguggggacagaggcgg	chr17:34171562-34171871(+)$1	309	100	123	11.1231
CGAUGUGGAUGUUUCUCUGCCCA	chr11:62290434-62290675(-)$1	241	69	92	11.1702
AAUUUGUACUAUAUGCACUUUUC	chr9:100774602-100774855(+)$1	253	31	54	7.9431
CCUAUUUGUAAUUACAACAAAAG	chr9:100773530-100773772(+)$1	242	169	192	10.1025
GGCUAUGGAGGAGACCGAGGUGG	chr17:34171875-34172138(+)$1	263	96	119	9.0419
GGAGGUGCUGAAGAGCGAGGAGG	chr4:39699762-39700068(+)$1	306	226	249	9.3598
AGUUAAAGGGAAACACGGGAAGC	chr11:62284257-62284578(-)$1	321	125	148	8.7251
AUAUGUAGUGCAAACUUUAAAGU	chr10:70101631-70101873(+)$1	242	11	34	9.8715
ggaugagcaagaaagcgaggccg	chr11:35685049-35685307(+)$1	258	11	34	8.1615
UUUCCACUCUUUAAGAAGAAGGA	chr1:150192890-150193164(-)$1	274	86	109	9.0695
CUGCCUGAGAUUGCUACUGGUGG	chr11:62300306-62300605(-)$1	299	127	150	10.3241
CUCUUGAAGGAGACUUGAGAGGA	chr11:62286001-62286236(-)$1	235	129	152	9.4616
GGCGCCUGGAUUUCCAGGAGGAG	chr16:28847428-28847693(+)$1	265	31	54	9.0368
GUAGAGAGGCCUGCCUCCAGGGC	chr19:13054502-13054836(+)$1	334	221	244	10.0611
GAGAGGUGCUGGUGUACGUGGAG	chrX:153595032-153595307(-)$1	275	161	184	9.7605
AAGGUCAUUAUGAGGUGACUGGG	chr11:62284203-62284436(-)$1	233	45	68	9.1794
CCAGGGGGUUAUGGCCACAGAGG	chr14:23528279-23528616(-)$1	337	300	323	12.7381
AGGUGGACAUUGAUGUUCCAGAU	chr11:62297190-62297432(-)$1	242	177	200	8.8222
UCAGGACCAAAGGUGGAAGGAGG	chr11:62284904-62285131(-)$1	227	100	123	12.5290
AGGGCAGUAGAGGUACAGGGCCC	chr11:62300880-62301181(-)$1	301	151	174	10.8850
GGCUACGGUGGAGACCGAAGUGG	chr17:34171748-34172015(+)$1	267	172	195	10.3908
CUGCCUGAGAUUGCUACUGGUGG	chr11:62300405-62300651(-)$1	246	173	196	10.3241
UCUCAGGACCCAAGGUGGACAUC	chr11:62298387-62298640(-)$1	253	221	244	8.6243
GUGCAAACUUUAAAGUGCAGGUA	chr10:70101465-70101709(+)$1	244	184	207	12.3287

#DB
(((((.(((....))))))))))	chr11:62297232-62297514(-)$1	1	240	263	9.9766
.((...(((....)))...))..	chr19:49611445-49611716(+)$1	1	120	143	12.1181
.(((...((....))...))).)	chr17:34171562-34171871(+)$1	1	100	123	11.1231
((....(((....))).))))).	chr11:62290434-62290675(-)$1	1	69	92	11.1702
((..((((.....))))...)))	chr9:100774602-100774855(+)$1	1	31	54	7.9431
.....((((....))))...)))	chr9:100773530-100773772(+)$1	1	169	192	10.1025
.(((.(((......))).))).)	chr17:34171875-34172138(+)$1	1	96	119	9.0419
.((..((((....))))......	chr4:39699762-39700068(+)$1	1	226	249	9.3598
((((....(......)....)))	chr11:62284257-62284578(-)$1	1	125	148	8.7251
((....(((....))).....))	chr10:70101631-70101873(+)$1	1	11	34	9.8715
((....((......))....)).	chr11:35685049-35685307(+)$1	1	11	34	8.1615
((((...(((...))).))))))	chr1:150192890-150193164(-)$1	1	86	109	9.0695
(((((.(((....)).).)))))	chr11:62300306-62300605(-)$1	1	127	150	10.3241
(((...(((....))))))))).	chr11:62286001-62286236(-)$1	1	129	152	9.4616
(((.(((((....)))))....)	chr16:28847428-28847693(+)$1	1	31	54	9.0368
.(.(.((((....)))))).)))	chr19:13054502-13054836(+)$1	1	221	244	10.0611
(..(.((((....)))).)....	chrX:153595032-153595307(-)$1	1	161	184	9.7605
..(((((((....)))))))...	chr11:62284203-62284436(-)$1	1	45	68	9.1794
((...((((....))).)...))	chr14:23528279-23528616(-)$1	1	300	323	12.7381
...((((((....)).))))...	chr11:62297190-62297432(-)$1	1	177	200	8.8222
((....(((....)))...))))	chr11:62284904-62285131(-)$1	1	100	123	12.5290
.((((.(((....)))...))))	chr11:62300880-62301181(-)$1	1	151	174	10.8850
.(((.((((....)))).))).)	chr17:34171748-34172015(+)$1	1	172	195	10.3908
(((((.(((....)).).)))))	chr11:62300405-62300651(-)$1	1	173	196	10.3241
(((....(((...)))))))).)	chr11:62298387-62298640(-)$1	1	221	244	8.6243
((((..(((....)))....)))	chr10:70101465-70101709(+)$1	1	184	207	12.3287

#PSSM
[ : 0.15	c : 0.15	g : 0.11	! : 0.11	d : 0.11	e : 0.07	= : 0.07	" : 0.07	$ : 0.03	b : 0.03	f : 0.03	
c : 0.23	d : 0.15	g : 0.11	b : 0.11	e : 0.07	= : 0.07	" : 0.07	$ : 0.03	f : 0.03	a : 0.03	! : 0.03	
g : 0.15	c : 0.15	# : 0.15	b : 0.07	! : 0.07	d : 0.07	= : 0.07	" : 0.07	$ : 0.03	f : 0.03	[ : 0.03	e : 0.03	
# : 0.19	g : 0.15	" : 0.11	c : 0.11	d : 0.11	! : 0.07	= : 0.07	a : 0.07	$ : 0.03	[ : 0.03	
# : 0.23	" : 0.19	[ : 0.15	d : 0.11	g : 0.07	! : 0.07	= : 0.07	$ : 0.03	e : 0.03	
d : 0.26	# : 0.23	[ : 0.15	" : 0.15	c : 0.03	e : 0.03	g : 0.03	a : 0.03	! : 0.03	
c : 0.38	d : 0.26	" : 0.07	# : 0.07	a : 0.07	b : 0.03	e : 0.03	g : 0.03	
c : 0.46	d : 0.23	b : 0.19	# : 0.03	e : 0.03	g : 0.03	
c : 0.42	d : 0.19	b : 0.15	o : 0.07	n : 0.03	a : 0.03	e : 0.03	g : 0.03	
m : 0.76	o : 0.11	c : 0.07	n : 0.03	
m : 0.76	o : 0.11	l : 0.07	n : 0.03	
m : 0.76	o : 0.11	l : 0.07	n : 0.03	
m : 0.76	o : 0.11	l : 0.07	n : 0.03	
c : 0.42	d : 0.23	b : 0.15	o : 0.11	e : 0.03	g : 0.03	
c : 0.46	d : 0.23	b : 0.19	o : 0.03	e : 0.03	g : 0.03	
c : 0.46	d : 0.23	] : 0.11	3 : 0.03	a : 0.03	b : 0.03	e : 0.03	g : 0.03	
d : 0.26	3 : 0.15	] : 0.11	4 : 0.11	g : 0.07	a : 0.07	e : 0.07	c : 0.03	5 : 0.03	f : 0.03	
3 : 0.23	] : 0.19	g : 0.11	e : 0.11	4 : 0.11	a : 0.07	6 : 0.03	5 : 0.03	f : 0.03	d : 0.03	
3 : 0.23	4 : 0.15	g : 0.11	c : 0.11	e : 0.07	= : 0.07	a : 0.07	6 : 0.03	5 : 0.03	f : 0.03	d : 0.03	
4 : 0.15	g : 0.11	c : 0.11	3 : 0.11	d : 0.11	e : 0.07	6 : 0.07	= : 0.07	b : 0.03	5 : 0.03	f : 0.03	] : 0.03	
c : 0.15	d : 0.15	g : 0.11	4 : 0.11	b : 0.07	e : 0.07	6 : 0.07	= : 0.07	h : 0.03	5 : 0.03	f : 0.03	3 : 0.03	
d : 0.19	] : 0.15	g : 0.11	4 : 0.11	c : 0.07	6 : 0.07	= : 0.07	2 : 0.03	e : 0.03	h : 0.03	b : 0.03	f : 0.03	
d : 0.19	c : 0.15	g : 0.11	4 : 0.11	a : 0.07	6 : 0.07	: : 0.07	= : 0.07	2 : 0.03	b : 0.03	h : 0.03	

#score	261.12981003186144
#seq	26
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_transcript_m1_run1.txt

#BEAR
dd]ddddccccccccccccooooooccc22ccc]ccc:HH	chr8:99057634-99057869(-)$1	235	132	172	13.0081
hhhhhhhh"""bb!!cccooooooccc22bb333hhhhhh	chr14:103800665-103800918(+)$1	253	38	78	16.1151
iiiiiiii[a[ccc[aooooooaccc22a]iiiiiiiii4	chr6:32821038-32821359(-)$1	321	90	130	16.5878
fffff[ccc[bb[ccc[aooooooa]ccc]bb22cccfff	chr8:56986841-56987082(-)$1	241	124	164	16.2874
ffffff[ccc"""eeeeeooooooeeeee22cccffffff	chr6:11094277-11094679(+)$1	402	6	46	15.5595
ccc:ffffff[accccccooooooccc333ccc]a22fff	chr11:46740688-46740964(+)$1	276	231	271	16.6387
========[ccc[a[cccooooooccc]a]ccc]======	chr20:3451901-3452137(+)$1	236	68	108	20.9471
fff[ggggggg!!eeeeeooooooeeeeegggggggffff	chr17:80186823-80187083(+)$1	260	178	218	16.5724
bb[bb[ccc[bb[eeeeeooooooeeeee]bb]ccc]bb]	chr19:8372932-8373176(-)$1	244	64	104	14.9074
iiiiiiiiiccc[bboooooobb]ccc4444iiiiiiiii	chr19:1941230-1941481(+)$1	251	133	173	14.3892
iii[accc[ccc[eeeeeooooooeeeeeccc22ccc]a]	chr6:11538052-11538336(+)$1	284	132	172	17.2882
cc[eeeeeeeeee"""bboooooobb]eeeee333eeeee	chr17:37809630-37809906(+)$1	276	159	199	14.2210
ff"""bb[dddd[a[cccooooooccc]adddd]bb22ff	chr10:124134131-124134425(+)$1	294	235	275	16.2891
ggggggffffff[ccc[bboooooobb]cccffffff22g	chr10:94449641-94449917(+)$1	276	125	165	13.7515
cceeeeea[dddd!!cccooooooccc22dddd]a]eeee	chr1:236228283-236228541(-)$1	258	118	158	16.5719
[ccc!!bb[eeeee[cccooooooccceeeeebbccc]gg	chr6:34204557-34204825(+)$1	268	48	88	16.5041
[ggggggg[ccc[bbcccooooooccc]bb]cccgggggg	chr14:101193231-101193515(+)$1	284	19	59	17.9228
d####ccc[ccceeeeeooooooeeeee22ccc]ccc333	chr16:11036092-11036392(-)$1	300	4	44	15.9172
dd!!a[ffffff"""ddddoooooodddd]ffffff]a22	chr15:73925478-73925718(-)$1	240	175	215	13.7604
cc[ccc!!a[ggggggg[annnnna]ggggggg]a22ccc	chr18:47721056-47721368(-)$1	312	257	297	12.9533
fffff"""dddd"""cccooooooccc4444dddd22fff	chr10:91011387-91011687(-)$1	300	148	188	16.8691
f%%%%%%ggggggg[cccooooooccc333gggggggfff	chr17:46127867-46128157(+)$1	290	48	88	14.6456
#iiiiiiiii!!bb[cccooooooccc22bb22iiiiiii	chr9:101984725-101984962(+)$1	237	51	91	18.2885
iiiiii[ccc"""eeeeeooooooeeeee]ccciiiiiii	chr19:49468493-49468706(+)$1	213	92	132	18.0240
eeeee=============oooooo=============::c	chr11:33278767-33279095(+)$1	328	67	107	15.9782
gg==========ddddaooooooa]dddd]==========	chr20:34220623-34220882(-)$1	259	219	259	17.2808
[ddddccc[dddd[bb[aooooooabb]ddddccc]dddd	chr19:58898533-58898791(+)$1	258	136	176	14.0241
========$$$$$eeeeemmmmeeeee4444=========	chrX:152913606-152913841(+)$1	235	18	58	13.2788
fffff[ggggggg[bb[annnnna]bb]ggggggg333ff	chr3:43147343-43147626(-)$1	283	207	247	12.8338
==========$$$$$cccooooooccc7777777======	chr5:38846042-38846289(+)$1	247	183	223	15.4090
gggggg!!ccc[bb[cccooooooccc]bb22ccc22ggg	chr1:36614853-36615182(-)$1	329	153	193	16.9982
=====[bb[ccc!!eeeeemmmmeeeee22ccc]bb22==	chr6:150070748-150071010(+)$1	262	198	238	12.6054
ccc[ccca!!eeeeecccooooooccc]eeeee22a]ccc	chr7:150066789-150067086(+)$1	297	60	100	17.4122
!ggggggg!!ccc"""cccnnnnnccc22ccc22gggggg	chr16:57836197-57836456(-)$1	259	156	196	15.0687
ggg[==========[aqqqqqqqqa==========ggggg	chr1:51701892-51702191(+)$1	299	247	287	13.0744
"""dddd####eeeee[bboooooobb]eeeee]dddd]g	chr2:120194431-120194673(+)$1	242	108	148	13.2826
[bb[a[bb[ccc[a[ccc[aooooooa]ccca]ccc]bb]	chr21:34697257-34697537(+)$1	280	157	197	15.1659
ffff!!a!!dddd[ddddoooooodddd22dddd22a22f	chr11:62389315-62389569(-)$1	254	131	171	14.8779
cffffff[eeeee!!cccooooooccc22eeeeeffffff	chr16:30094625-30094855(+)$1	230	170	210	16.0837
ccc!!a[gggggggddddnnnnndddd4444ggggggg]a	chr1:9883763-9884016(-)$1	253	2	42	13.3152
bccc[eeeee####ddddooooooddddeeeee]ccc]bb	chr2:11484582-11484861(-)$1	279	221	261	14.9838
iiiiiiiii%%%%%%cccooooooccc333iiiiiiiii2	chr19:39109736-39110026(+)$1	290	181	221	16.6022
eeeee!!bb!!ccc[bboooooobbccc333bb22eeeee	chr2:27651462-27651699(+)$1	237	163	203	13.8466
======[a!!bb[fffffflllffffff22bb]a]=====	chr19:8274159-8274449(+)$1	290	125	165	12.3829
cbb[dddd[bb[dddd[aooooooadddd]bb22ddddbb	chr1:225997728-225997976(+)$1	248	117	157	13.5285
=!!ggggggg!!bb[cccoooooocccbb]ggggggg777	chr2:10952716-10952955(-)$1	239	9	49	15.8337
d:================oooooo================	chr1:154942861-154943110(-)$1	249	39	79	18.0803
hhhhhhhhcccgggggggooooooggggggg333cccddd	chr22:24944842-24945070(-)$1	228	45	85	15.0835
ccc[ccca!!eeeeecccooooooccc]eeeee22a]ccc	chr7:150066658-150066920(+)$1	262	191	231	17.4122

#otherMatches

#Seq PSSM
UGGUGAGUGGGCUCCUACCGACCGAGGUUUAGGCAGCGCG	chr8:99057634-99057869(-)$1	235	132	172	13.0081
CGGCGCCGUCUCUCCGCGCCAGGUCGCCCAGCUCCGGCGC	chr14:103800665-103800918(+)$1	253	38	78	16.1151
CCCACCGCGCUGCCACUGCUCCGGGUCUGGGCGGUGGGCC	chr6:32821038-32821359(-)$1	321	90	130	16.5878
CCCGCGCGCAACAGCCAUGGUGAGGCGGCAGUCGGCGGCG	chr8:56986841-56987082(-)$1	241	124	164	16.2874
CUAGAGGCGCCCUGAGGCCCGCCUGCCUCCCGCGCUCUGG	chr6:11094277-11094679(+)$1	402	6	46	15.5595
GGCUGGGGUCUCCUGGCUGGACAGAGCACACAGAGCUGGC	chr11:46740688-46740964(+)$1	276	231	271	16.6387
gcugcugcugcugcugcCCUGUGAggccgaggccgcggcg	chr20:3451901-3452137(+)$1	236	68	108	20.9471
UCGCGCGCGGGCCGGGGCCCAGGAGCUCCCCCGUGCCGGG	chr17:80186823-80187083(+)$1	260	178	218	16.5724
GCUGCUGCUGCUCGGCCUCGGACUAGGCCUGGAGGCCGCC	chr19:8372932-8373176(-)$1	244	64	104	14.9074
GGCCGGGCCGGCCGCCCAGACGCUGCCCGCGGGCCCGGCC	chr19:1941230-1941481(+)$1	251	133	173	14.3892
GAGAGGGAGCGGCGGCGGCCUCCUCCGCCCCGAGUCCUCG	chr6:11538052-11538336(+)$1	284	132	172	17.2882
CAAGCUGCCCAGGGAGCUGACCCGAGACUUGGAGCGCAGC	chr17:37809630-37809906(+)$1	276	159	199	14.2210
GUGGACGGGGCCAGGCGCGAGGUGGCGGCGGCUGCGGGGC	chr10:124134131-124134425(+)$1	294	235	275	16.2891
ggcggcgggcgccgUGGGGGUGCCGCUGUACGCGCCCACG	chr10:94449641-94449917(+)$1	276	125	165	13.7515
GUCCUGGCCGCGGGACCGGGUUUGCGGGACCGCAGUUCGG	chr1:236228283-236228541(-)$1	258	118	158	16.5719
ACGGCUGGCGCGGGCGGGCCCGUCCCCCCUGCCCCUGGGU	chr6:34204557-34204825(+)$1	268	48	88	16.5041
uggAGAGCGCAGCGCGCAGCCCGGUGCAGCCCUGGCUUUC	chr14:101193231-101193515(+)$1	284	19	59	17.9228
CAAUUAGCGCGUGCAGGGGGCGGCCUGCCAAUGAGCUCGG	chr16:11036092-11036392(-)$1	300	4	44	15.9172
CGCUGCCCAGCGCCCUGGCCCUCUCGCUGUUGCUGGUCUC	chr15:73925478-73925718(-)$1	240	175	215	13.7604
cccggggccgggguggcgcgcucggggccACCUAGUACUC	chr18:47721056-47721368(-)$1	312	257	297	12.9533
AGCUGGCACUGCGACUCGAGACAGCGGCCCGGCAGGACAG	chr10:91011387-91011687(-)$1	300	148	188	16.8691
UGAUGUGAAAAGUAUGGAAUCUUAUCCUGUUGCUUUUGUG	chr17:46127867-46128157(+)$1	290	48	88	14.6456
UGGGGCAGGCCUGCCGCGCUCACCCGUCUGUCUGCUUGUC	chr9:101984725-101984962(+)$1	237	51	91	18.2885
GUCUGUCUCUUGCUUCAACAGUGUUUGGACGGAACAGAUC	chr19:49468493-49468706(+)$1	213	92	132	18.0240
gggcgcgcagcgcugccgggcgggcggUGGCGCUGCGGAG	chr11:33278767-33279095(+)$1	328	67	107	15.9782
GGGGUGGAGGCUGUGACUGUGAUGCUUACUGGCCUCUGCC	chr20:34220623-34220882(-)$1	259	219	259	17.2808
ACGCCGAGUGACAGAGACGCUCAGGCUGUGUUCUCAGGUG	chr19:58898533-58898791(+)$1	258	136	176	14.0241
CCCCGCCUGCCCCCGUGCUCCUGUACGACCAgggcggggg	chrX:152913606-152913841(+)$1	235	18	58	13.2788
GGGGCGGCGGCGGGGUGGGAAAGCGGCGCCGCCGUGGGGC	chr3:43147343-43147626(-)$1	283	207	247	12.8338
GGCGUGAGUACCCCCGACCCGCCCGUCCCCGCUCUGCUCG	chr5:38846042-38846289(+)$1	247	183	223	15.4090
GUCGCCGAGCUAACCCGUGGCUAGGCGAGUGGGGCGGGGC	chr1:36614853-36615182(-)$1	329	153	193	16.9982
ggugugggagguggUCUCACUCUUGGGAAAACUGCUGGGC	chr6:150070748-150071010(+)$1	262	198	238	12.6054
GCUACCGGAGUGUGGGCCGAAGCAGGCGCUGCAGCCGCGG	chr7:150066789-150067086(+)$1	297	60	100	17.4122
UCCUGCCUCCGCCAGGCCGGUGAGUGGGGGGCCCGGGCGG	chr16:57836197-57836456(-)$1	259	156	196	15.0687
gggcggggUGGGGAAGUGCUUCGUCUCCCCGCCCCCCCCC	chr1:51701892-51702191(+)$1	299	247	287	13.0744
UGUGUGGCCCUGGCUGUGGUCCUGUCCUCGGUCUCCAUUU	chr2:120194431-120194673(+)$1	242	108	148	13.2826
UGGGUGUUGUCCGCAGCCGCAGGUGAGAGGCGGGGAGGAG	chr21:34697257-34697537(+)$1	280	157	197	15.1659
cgcgggcggcggcgcggccAUGAAGCUGAAGCUGAAGAAC	chr11:62389315-62389569(-)$1	254	131	171	14.8779
GAGUGCCUGCGCAAGUACGGCUCGGUGACUGUGUGGCGCU	chr16:30094625-30094855(+)$1	230	170	210	16.0837
GCUGCCGCUGCCUUCAGCAAGACGCUGCUCUGAGGCGGGG	chr1:9883763-9884016(-)$1	253	2	42	13.3152
CCCGGGGCCCCAGAgggcggggcgguccgggccgcggcgg	chr2:11484582-11484861(-)$1	279	221	261	14.9838
UUUGAGCAGAUGAGAGCCAACGUGGGCAAGUUGCUCAAGG	chr19:39109736-39110026(+)$1	290	181	221	16.6022
GGAGGGAGGGGUUCGCGAGAGGACGGAAGGAUCGGCCUCC	chr2:27651462-27651699(+)$1	237	163	203	13.8466
GCGCGUGUCUGCAGCUGCUCCGGGUAGCCCGCUAggcgcg	chr19:8274159-8274449(+)$1	290	125	165	12.3829
GCCGCCGGAGCCUGCGAGCCGAGACCGUAAgcgcccgggg	chr1:225997728-225997976(+)$1	248	117	157	13.5285
cggccgccccUCGGACCACCGGACUGGCCUGGGGCGGGAC	chr2:10952716-10952955(-)$1	239	9	49	15.8337
CUGCCUGGCCCCCUUGCCCAAACUGGCAGGGGGGCCAGGC	chr1:154942861-154943110(-)$1	249	39	79	18.0803
gugggagugguggGCUCUGCGCUGAGGGUCUGUGACCUCC	chr22:24944842-24945070(-)$1	228	45	85	15.0835
GCUACCGGAGUGUGGGCCGAAGCAGGCGCUGCAGCCGCGG	chr7:150066658-150066920(+)$1	262	191	231	17.4122

#DB
)).)))))))(((((((((......)))..))).))).))	chr8:99057634-99057869(-)$1	1	132	172	13.0081
((((((((...((..(((......)))..))...))))))	chr14:103800665-103800918(+)$1	1	38	78	16.1151
((((((((.(.(((.(......))))..).))))))))).	chr6:32821038-32821359(-)$1	1	90	130	16.5878
(((((.(((.((.(((.(......).))).))..))))))	chr8:56986841-56987082(-)$1	1	124	164	16.2874
((((((.(((...(((((......)))))..)))))))))	chr6:11094277-11094679(+)$1	1	6	46	15.5595
))).((((((.(((((((......)))...))).)..)))	chr11:46740688-46740964(+)$1	1	231	271	16.6387
((((((((.(((.(.(((......))).).))).))))))	chr20:3451901-3452137(+)$1	1	68	108	20.9471
(((.(((((((..(((((......))))))))))))))))	chr17:80186823-80187083(+)$1	1	178	218	16.5724
((.((.(((.((.(((((......))))).)).))).)).	chr19:8372932-8373176(-)$1	1	64	104	14.9074
((((((((((((.((......)).)))....)))))))))	chr19:1941230-1941481(+)$1	1	133	173	14.3892
(((.((((.(((.(((((......))))))))..))).).	chr6:11538052-11538336(+)$1	1	132	172	17.2882
((.((((((((((...((......)).)))))...)))))	chr17:37809630-37809906(+)$1	1	159	199	14.2210
((...((.((((.(.(((......))).))))).))..))	chr10:124134131-124134425(+)$1	1	235	275	16.2891
((((((((((((.(((.((......)).)))))))))..)	chr10:94449641-94449917(+)$1	1	125	165	13.7515
((((((((.((((..(((......)))..)))).).))))	chr1:236228283-236228541(-)$1	1	118	158	16.5719
.(((..((.(((((.(((......))))))))))))).))	chr6:34204557-34204825(+)$1	1	48	88	16.5041
.(((((((.(((.(((((......))).)).)))))))))	chr14:101193231-101193515(+)$1	1	19	59	17.9228
(....(((.((((((((......)))))..))).)))...	chr16:11036092-11036392(-)$1	1	4	44	15.9172
((..(.((((((...((((......)))).)))))).)..	chr15:73925478-73925718(-)$1	1	175	215	13.7604
((.(((..(.(((((((.(.....).))))))).)..)))	chr18:47721056-47721368(-)$1	1	257	297	12.9533
(((((...((((...(((......)))....))))..)))	chr10:91011387-91011687(-)$1	1	148	188	16.8691
(......(((((((.(((......)))...))))))))))	chr17:46127867-46128157(+)$1	1	48	88	14.6456
.(((((((((..((.(((......)))..))..)))))))	chr9:101984725-101984962(+)$1	1	51	91	18.2885
((((((.(((...(((((......))))).))))))))))	chr19:49468493-49468706(+)$1	1	92	132	18.0240
)))))(((((((((((((......)))))))))))))..(	chr11:33278767-33279095(+)$1	1	67	107	15.9782
))(((((((((((((((......).)))).))))))))))	chr20:34220623-34220882(-)$1	1	219	259	17.2808
.(((((((.((((.((.(......))).))))))).))))	chr19:58898533-58898791(+)$1	1	136	176	14.0241
((((((((.....(((((....)))))....)))))))))	chrX:152913606-152913841(+)$1	1	18	58	13.2788
(((((.(((((((.((.(.....).)).)))))))...))	chr3:43147343-43147626(-)$1	1	207	247	12.8338
((((((((((.....(((......))).......))))))	chr5:38846042-38846289(+)$1	1	183	223	15.4090
((((((..(((.((.(((......))).))..)))..)))	chr1:36614853-36615182(-)$1	1	153	193	16.9982
(((((.((.(((..(((((....)))))..))).))..))	chr6:150070748-150071010(+)$1	1	198	238	12.6054
(((.((((..((((((((......))).)))))..).)))	chr7:150066789-150067086(+)$1	1	60	100	17.4122
.(((((((..(((...(((.....)))..)))..))))))	chr16:57836197-57836456(-)$1	1	156	196	15.0687
(((.((((((((((.(........))))))))))))))))	chr1:51701892-51702191(+)$1	1	247	287	13.0744
...((((....(((((.((......)).))))).)))).)	chr2:120194431-120194673(+)$1	1	108	148	13.2826
.((.(.((.(((.(.(((.(......).)))).))).)).	chr21:34697257-34697537(+)$1	1	157	197	15.1659
((((..(..((((.((((......))))..))))..)..)	chr11:62389315-62389569(-)$1	1	131	171	14.8779
)((((((.(((((..(((......)))..)))))))))))	chr16:30094625-30094855(+)$1	1	170	210	16.0837
(((..(.(((((((((((.....))))....))))))).)	chr1:9883763-9884016(-)$1	1	2	42	13.3152
((((.(((((....((((......))))))))).))).))	chr2:11484582-11484861(-)$1	1	221	261	14.9838
(((((((((......(((......)))...))))))))).	chr19:39109736-39110026(+)$1	1	181	221	16.6022
(((((..((..(((.((......)))))...))..)))))	chr2:27651462-27651699(+)$1	1	163	203	13.8466
((((((.(..((.((((((...))))))..)).).)))))	chr19:8274159-8274449(+)$1	1	125	165	12.3829
(((.((((.((.((((.(......))))).))..))))))	chr1:225997728-225997976(+)$1	1	117	157	13.5285
(..(((((((..((.(((......))))).)))))))...	chr2:10952716-10952955(-)$1	1	9	49	15.8337
).((((((((((((((((......))))))))))))))))	chr1:154942861-154943110(-)$1	1	39	79	18.0803
))))))))((((((((((......)))))))...)))(((	chr22:24944842-24945070(-)$1	1	45	85	15.0835
(((.((((..((((((((......))).)))))..).)))	chr7:150066658-150066920(+)$1	1	191	231	17.4122

#PSSM
c : 0.18	f : 0.16	= : 0.12	i : 0.10	d : 0.08	g : 0.08	[ : 0.08	h : 0.04	b : 0.04	e : 0.04	# : 0.02	! : 0.02	" : 0.02	
c : 0.18	f : 0.16	i : 0.12	g : 0.12	= : 0.10	d : 0.06	b : 0.06	h : 0.04	e : 0.04	# : 0.02	% : 0.02	" : 0.02	! : 0.02	: : 0.02	
f : 0.14	= : 0.14	i : 0.12	c : 0.12	g : 0.10	[ : 0.06	e : 0.06	h : 0.04	" : 0.04	! : 0.04	b : 0.04	] : 0.02	# : 0.02	% : 0.02	d : 0.02	
= : 0.14	[ : 0.14	f : 0.12	i : 0.10	g : 0.10	e : 0.08	d : 0.06	c : 0.06	h : 0.04	! : 0.04	: : 0.02	b : 0.02	" : 0.02	# : 0.02	% : 0.02	
= : 0.16	f : 0.12	g : 0.12	i : 0.10	d : 0.08	e : 0.08	a : 0.06	! : 0.06	c : 0.06	h : 0.04	b : 0.02	" : 0.02	# : 0.02	% : 0.02	[ : 0.02	
= : 0.16	[ : 0.12	g : 0.12	c : 0.12	i : 0.10	d : 0.06	f : 0.06	e : 0.06	! : 0.06	h : 0.04	b : 0.02	" : 0.02	% : 0.02	a : 0.02	
c : 0.14	= : 0.14	g : 0.10	i : 0.08	[ : 0.08	f : 0.08	b : 0.08	d : 0.06	e : 0.06	! : 0.06	h : 0.04	" : 0.02	% : 0.02	a : 0.02	
c : 0.16	= : 0.14	g : 0.14	i : 0.08	a : 0.08	b : 0.08	f : 0.06	! : 0.06	h : 0.04	e : 0.04	[ : 0.04	" : 0.02	# : 0.02	d : 0.02	
[ : 0.22	c : 0.14	g : 0.10	= : 0.10	! : 0.10	f : 0.06	i : 0.06	e : 0.06	d : 0.04	" : 0.02	a : 0.02	$ : 0.02	# : 0.02	b : 0.02	
c : 0.24	g : 0.10	d : 0.10	= : 0.10	! : 0.10	e : 0.08	[ : 0.06	f : 0.06	" : 0.02	a : 0.02	i : 0.02	$ : 0.02	# : 0.02	% : 0.02	b : 0.02	
c : 0.22	g : 0.10	e : 0.10	d : 0.10	b : 0.08	= : 0.08	" : 0.06	! : 0.06	[ : 0.04	f : 0.04	$ : 0.04	# : 0.04	% : 0.02	
c : 0.22	e : 0.12	d : 0.10	g : 0.10	b : 0.08	= : 0.08	! : 0.06	" : 0.04	f : 0.04	$ : 0.04	[ : 0.04	a : 0.02	# : 0.02	% : 0.02	
[ : 0.20	e : 0.14	c : 0.10	d : 0.10	g : 0.10	b : 0.08	" : 0.08	= : 0.06	! : 0.04	$ : 0.04	# : 0.02	% : 0.02	
e : 0.22	c : 0.12	b : 0.10	! : 0.08	" : 0.08	g : 0.08	a : 0.06	= : 0.06	[ : 0.06	d : 0.04	$ : 0.02	# : 0.02	% : 0.02	f : 0.02	
[ : 0.22	e : 0.22	d : 0.10	c : 0.08	b : 0.08	" : 0.08	! : 0.06	g : 0.04	= : 0.04	$ : 0.02	% : 0.02	f : 0.02	
c : 0.42	e : 0.18	d : 0.12	b : 0.06	a : 0.04	" : 0.04	g : 0.04	= : 0.04	o : 0.02	f : 0.02	
c : 0.40	e : 0.16	[ : 0.12	d : 0.08	o : 0.04	b : 0.04	g : 0.04	= : 0.04	a : 0.02	q : 0.02	f : 0.02	
c : 0.40	e : 0.14	o : 0.10	a : 0.08	d : 0.08	b : 0.06	= : 0.04	[ : 0.02	q : 0.02	f : 0.02	g : 0.02	
o : 0.73	c : 0.04	b : 0.04	n : 0.04	d : 0.02	a : 0.02	m : 0.02	e : 0.02	q : 0.02	[ : 0.02	f : 0.02	
o : 0.81	n : 0.08	m : 0.04	q : 0.02	a : 0.02	l : 0.02	
o : 0.83	n : 0.08	m : 0.04	q : 0.02	l : 0.02	
o : 0.81	n : 0.08	m : 0.04	b : 0.02	q : 0.02	l : 0.02	
o : 0.79	n : 0.08	a : 0.02	b : 0.02	e : 0.02	m : 0.02	q : 0.02	f : 0.02	
o : 0.73	e : 0.06	n : 0.04	a : 0.04	c : 0.02	] : 0.02	q : 0.02	d : 0.02	b : 0.02	f : 0.02	
c : 0.40	e : 0.16	o : 0.10	a : 0.10	d : 0.06	b : 0.04	= : 0.04	] : 0.04	f : 0.02	g : 0.02	
c : 0.44	e : 0.16	d : 0.12	b : 0.10	= : 0.06	] : 0.04	o : 0.02	f : 0.02	g : 0.02	
c : 0.44	e : 0.16	d : 0.12	b : 0.08	= : 0.06	g : 0.04	2 : 0.02	] : 0.02	a : 0.02	f : 0.02	
] : 0.22	e : 0.18	2 : 0.12	d : 0.10	4 : 0.08	c : 0.06	3 : 0.06	= : 0.06	g : 0.04	7 : 0.02	f : 0.02	b : 0.02	
e : 0.22	2 : 0.20	3 : 0.08	4 : 0.08	d : 0.08	a : 0.06	c : 0.06	b : 0.06	g : 0.06	= : 0.06	7 : 0.02	
] : 0.18	e : 0.14	2 : 0.12	b : 0.08	3 : 0.08	g : 0.08	4 : 0.08	c : 0.08	d : 0.06	= : 0.06	7 : 0.02	
c : 0.20	e : 0.14	b : 0.12	g : 0.12	4 : 0.08	d : 0.08	= : 0.08	i : 0.04	2 : 0.04	] : 0.02	f : 0.02	7 : 0.02	3 : 0.02	
c : 0.20	e : 0.14	g : 0.12	b : 0.10	d : 0.10	= : 0.10	i : 0.06	3 : 0.04	f : 0.04	2 : 0.04	7 : 0.02	a : 0.02	
c : 0.20	g : 0.12	2 : 0.10	= : 0.10	e : 0.10	d : 0.08	3 : 0.06	i : 0.06	] : 0.06	f : 0.04	b : 0.04	7 : 0.02	
] : 0.20	2 : 0.14	c : 0.12	i : 0.10	g : 0.10	= : 0.10	3 : 0.06	f : 0.04	d : 0.04	b : 0.02	7 : 0.02	e : 0.02	a : 0.02	
c : 0.22	= : 0.14	g : 0.14	i : 0.10	f : 0.08	2 : 0.08	a : 0.06	d : 0.06	b : 0.04	h : 0.02	3 : 0.02	] : 0.02	
c : 0.18	= : 0.14	g : 0.14	i : 0.10	2 : 0.10	f : 0.08	e : 0.04	b : 0.04	] : 0.04	a : 0.04	d : 0.04	h : 0.02	3 : 0.02	
c : 0.14	= : 0.14	2 : 0.12	g : 0.12	i : 0.10	] : 0.10	f : 0.08	e : 0.06	d : 0.06	h : 0.02	3 : 0.02	a : 0.02	
f : 0.14	= : 0.12	i : 0.10	g : 0.10	2 : 0.08	d : 0.08	] : 0.06	e : 0.06	c : 0.06	: : 0.04	b : 0.04	3 : 0.04	h : 0.02	a : 0.02	7 : 0.02	
f : 0.18	= : 0.14	i : 0.10	g : 0.10	b : 0.08	e : 0.06	2 : 0.06	c : 0.06	d : 0.04	] : 0.04	H : 0.02	h : 0.02	a : 0.02	3 : 0.02	: : 0.02	7 : 0.02	
f : 0.20	= : 0.14	g : 0.14	c : 0.08	] : 0.06	i : 0.06	e : 0.06	2 : 0.04	d : 0.04	b : 0.04	H : 0.02	h : 0.02	4 : 0.02	3 : 0.02	a : 0.02	7 : 0.02	

#score	758.4647292541224
#seq	49
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_transcript_m1_run1.txt

#BEAR
##ccc[bbtttttttttttbbccc333	chr16:87879924-87880172(-)$1	248	64	91	23.2633
eeeee[bbuuuuuuuuuuuubb22eee	chr2:176042804-176043061(-)$1	257	13	40	22.9171
bffffffuuuuuuuuuuuuffffffFF	chr16:89970636-89970921(+)$1	285	179	206	22.9750
gg[ddddvvvvvvvvvvvvvdddd]gg	chr1:25568668-25569018(-)$1	350	67	94	24.2799
ddeeeeevvvvvvvvvvvvveeeee22	chr12:56735520-56735788(-)$1	268	44	71	23.9125
c[fffffftttttttttttffffff]c	chr19:8553713-8553986(+)$1	273	77	104	23.9431
Iffffffvvvvvvvvvvvvvffffff:	chr4:760823-761092(-)$1	269	139	166	22.4305
g[ccc[bbtttttttttttbb]cccgg	chr6:31802812-31803048(+)$1	236	146	173	23.2249
!!ffffffuuuuuuuuuuuuffffff2	chr9:127998638-127998851(-)$1	213	26	53	24.3408
c[eeeeewwwwwwwwwwwwwweeeee]	chr17:74730240-74730502(-)$1	262	98	125	23.5354
#eeeeeyyyyyyyyyyyyyyyyeeeee	chr16:24227115-24227388(+)$1	273	153	180	22.1728
dgggggggvvvvvvvvvvvvvgggggg	chr6:75949929-75950200(-)$1	271	158	185	24.1185
cc[dddduuuuuuuuuuuudddd]ccc	chr9:33953315-33953572(-)$1	257	79	106	23.3897
ggggcccvvvvvvvvvvvvvccc22gg	chr22:20098330-20098574(+)$1	244	142	169	24.6416
iiiiiiiwwwwwwwwwwwwwwiiiiii	chr12:49521551-49521800(-)$1	249	215	242	23.4814
fff!!ccctttttttttttccc22fff	chr2:55461995-55462198(+)$1	203	82	109	23.4869
eee[cccwwwwwwwwwwwwwwccceee	chr3:49397446-49397704(-)$1	258	131	158	23.0775
c[fffffftttttttttttffffffcc	chrX:77381483-77381726(+)$1	243	195	222	23.8083
d[fffffftttttttttttffffffdd	chr16:56448073-56448346(-)$1	273	50	77	23.2887
[eeeeeyyyyyyyyyyyyyyyyeeeee	chr22:49870289-49870528(-)$1	239	119	146	22.2562
ii[cccyyyyyyyyyyyyyyyyccc22	chrX:154005736-154005999(+)$1	263	226	253	22.1303
ffffffyyyyyyyyyyyyyyyyfffff	chr8:124221615-124221871(+)$1	256	33	60	22.1505
!!ccc[auuuuuuuuuuuua]ccc22d	chr3:25639608-25639854(-)$1	246	185	212	24.0322
eeeeyyyyyyyyyyyyyyyyeeeee33	chr17:47787685-47787928(-)$1	243	136	163	21.5851
HHccccccuuuuuuuuuuuuccc]ccc	chrX:123234378-123234716(+)$1	338	227	254	22.9672
hhffffffwwwwwwwwwwwwwwfffff	chr6:150045391-150045697(-)$1	306	248	275	22.0018
:gggggggtttttttttttggggggg:	chr20:34291514-34291776(-)$1	262	228	255	22.3933
ffffddddtttttttttttdddd]fff	chr21:44263120-44263396(-)$1	276	76	103	23.1665
[bb!!a[attttttttttta]a22bba	chr16:89025105-89025386(-)$1	281	63	90	22.4842
!!eeeeewwwwwwwwwwwwwweeeee]	chr16:88957724-88958012(-)$1	288	111	138	23.5703
ggeeeeewwwwwwwwwwwwwweeeee:	chr22:50039320-50039545(-)$1	225	189	216	22.5683
gggggggwwwwwwwwwwwwwwgggggg	chr11:34121856-34122105(+)$1	249	164	191	23.9482
gggggg[attttttttttta]gggggg	chr4:99993264-99993549(-)$1	285	200	227	25.0574
ggggggguuuuuuuuuuuuggggggge	chr2:61705150-61705452(-)$1	302	100	127	24.4889
ffff!!auuuuuuuuuuuua22fffff	chr9:138773485-138773771(-)$1	286	6	33	23.7513
#bb[ddddtttttttttttdddd]bbf	chr14:69847010-69847345(-)$1	335	218	245	21.8742
ee!!ddddtttttttttttdddd22ee	chr2:150426196-150426476(-)$1	280	33	60	22.6077
c[ffffffuuuuuuuuuuuuffffff]	chr22:49871544-49871787(-)$1	243	189	216	24.4686
cc[dddduuuuuuuuuuuudddd333c	chr15:64791680-64791938(+)$1	258	57	84	23.6248
gg[ddddvvvvvvvvvvvvvdddd]gg	chr1:25568858-25569131(-)$1	273	180	207	24.2799
##eeeeeuuuuuuuuuuuueeeee]ii	chr10:103546064-103546332(-)$1	268	15	42	23.9621
cc[ddddvvvvvvvvvvvvvdddd]cc	chr3:169866827-169867132(-)$1	305	76	103	23.8685
eeeeeeeeuuuuuuuuuuuueeeee]e	chr2:62099491-62099717(-)$1	226	172	199	24.0062
ffff[ccctttttttttttccc]ffff	chr12:51453973-51454248(+)$1	275	140	167	23.9814
c[fffffftttttttttttffffffcc	chrX:77381536-77381744(+)$1	208	142	169	23.8083
eeee[ccctttttttttttccc]eeee	chr17:79477193-79477433(-)$1	240	66	93	23.8583
:ggggggguuuuuuuuuuuuggggggg	chr22:49983783-49984071(-)$1	288	167	194	23.8570
====bbbbuuuuuuuuuuuubb]bb22	chrX:151121678-151121911(-)$1	233	72	99	22.2251
b[eeeeevvvvvvvvvvvvveeeee]b	chr16:89039058-89039298(-)$1	240	159	186	24.2057
eeee[bbwwwwwwwwwwwwwwbbeeee	chr17:16284334-16284558(+)$1	224	2	29	22.0510
ggg[cccwwwwwwwwwwwwwwcccggg	chr14:92583744-92584087(-)$1	343	249	276	23.7242
ccffffffuuuuuuuuuuuuffffff]	chr12:76440893-76441162(-)$1	269	133	160	24.2328
ee[ddddvvvvvvvvvvvvvdddd22e	chr17:39846976-39847280(+)$1	304	218	245	23.5152
!gggggggtttttttttttggggggg2	chr22:20099758-20100050(-)$1	292	133	160	24.1746
iiiiiiiitttttttttttiiiiiiii	chr18:75684362-75684610(-)$1	248	48	75	23.7191
gggggggvvvvvvvvvvvvvggggggg	chr2:85771997-85772285(+)$1	288	236	263	25.1350
ffffdddduuuuuuuuuuuudddd22f	chr22:49957873-49958124(-)$1	251	91	118	23.2853
beeeeeyyyyyyyyyyyyyyyyeeeee	chr1:173835365-173835604(-)$1	239	19	46	21.9494
gg[ddddvvvvvvvvvvvvvdddd]gg	chr6:44221388-44221593(+)$1	205	169	196	24.2799
iiiiiiiitttttttttttiiiiiiii	chr11:134118111-134118460(-)$1	349	260	287	23.7191
ccc[cccvvvvvvvvvvvvvccc]ccc	chr5:43705378-43705688(+)$1	310	5	32	24.4019
a[fffffftttttttttttffffff]a	chr16:66836727-66837015(-)$1	288	163	190	23.8650
gggggggvvvvvvvvvvvvvggggggg	chr7:105891388-105891636(-)$1	248	20	47	25.1350
gggeeeeeuuuuuuuuuuuueeeee::	chr7:119346005-119346294(-)$1	289	173	200	22.4864
!!eeeeevvvvvvvvvvvvveeeee22	chr16:56395863-56396165(-)$1	302	182	209	24.5415
gggggggwwwwwwwwwwwwwwgggggg	chr1:12072703-12072959(+)$1	256	21	48	23.9482
:gggggggtttttttttttggggggg:	chr8:91269499-91269814(+)$1	315	6	33	22.3933

#otherMatches

#Seq PSSM
uguccacguacagccacaccgggguua	chr16:87879924-87880172(-)$1	248	64	91	23.2633
AUGGUUGCUUUCUUGAUUUUGUUUGCC	chr2:176042804-176043061(-)$1	257	13	40	22.9171
CAGCCUCCAGCUUAAAAACGAGGCUCA	chr16:89970636-89970921(+)$1	285	179	206	22.9750
GUAAAUACUUAACACUCAAAUAUUAAC	chr1:25568668-25569018(-)$1	350	67	94	24.2799
CAAUGGGUCUUAGCUCUUUCUCUAUUA	chr12:56735520-56735788(-)$1	268	44	71	23.9125
UUGUUAACCAUUUUAAUUUGUUGGCUG	chr19:8553713-8553986(+)$1	273	77	104	23.9431
CAGCUGCUCACCCUGUCCCUGCAGCUC	chr4:760823-761092(-)$1	269	139	166	22.4305
CUGCUGACUCAAAACAACUGUGAGUGG	chr6:31802812-31803048(+)$1	236	146	173	23.2249
AACUUUUGUUAGGAAAAAAUUGAAAGA	chr9:127998638-127998851(-)$1	213	26	53	24.3408
CUUUUUUUCCCUCUUCCCCCUAAAAAU	chr17:74730240-74730502(-)$1	262	98	125	23.5354
CUGUUAUGUGCCAUUUUUCUUCUAGCA	chr16:24227115-24227388(+)$1	273	153	180	22.1728
AGCCACCAUGAUUCUUACAGUUGGUGG	chr6:75949929-75950200(-)$1	271	158	185	24.1185
CAUUGCUUUUUGUCUGCUUAGCAUUGA	chr9:33953315-33953572(-)$1	257	79	106	23.3897
UAAAGCUUUUGUGAUAUUUUAGCAUUU	chr22:20098330-20098574(+)$1	244	142	169	24.6416
GUAAAGUCAUUAACAUCAAAAGCUUUG	chr12:49521551-49521800(-)$1	249	215	242	23.4814
GCUGUCCUGAAAUAUUAUAAGGUGAGC	chr2:55461995-55462198(+)$1	203	82	109	23.4869
UUACUGGCCUUUUUCAUUUAUCUAUAA	chr3:49397446-49397704(-)$1	258	131	158	23.0775
GCAUGGAAACAAGAUGAAAUUCCAUUU	chrX:77381483-77381726(+)$1	243	195	222	23.8083
GCAGGAAGAAAUAAACUUCCUUUCUCU	chr16:56448073-56448346(-)$1	273	50	77	23.2887
uccagucaucauccauccacccaCUGG	chr22:49870289-49870528(-)$1	239	119	146	22.2562
GAUGCUUUUAUGUUUGUUUUCUGGUUU	chrX:154005736-154005999(+)$1	263	226	253	22.1303
ACUUUUUUCCUCCUUAGUUCCUGAAAG	chr8:124221615-124221871(+)$1	256	33	60	22.1505
GUAGGCCUUUUAACAUUUUGUUCUUAC	chr3:25639608-25639854(-)$1	246	185	212	24.0322
AGAAUGUUAAUGUUCGAGUUUUCUUAU	chr17:47787685-47787928(-)$1	243	136	163	21.5851
GUUUGCCUGAAUAAACGUAAAGGACAA	chrX:123234378-123234716(+)$1	338	227	254	22.9672
UUGCUUCUAUCUGUCUUAUCUCGGGAG	chr6:150045391-150045697(-)$1	306	248	275	22.0018
AGUCUCUUAAAAAGGCCACAGGAGAUC	chr20:34291514-34291776(-)$1	262	228	255	22.3933
gaugagcuuguucggauguagcuccau	chr21:44263120-44263396(-)$1	276	76	103	23.1665
AUGGAGGCAAAGGGAAAAGGGCGGCAG	chr16:89025105-89025386(-)$1	281	63	90	22.4842
UAGGGCCCAGGACAUGCAGCAGGUCCC	chr16:88957724-88958012(-)$1	288	111	138	23.5703
GAGGUUUAACAGCAAUAUUAGAGACCA	chr22:50039320-50039545(-)$1	225	189	216	22.5683
UAUAAGCAAAACAAAUAAAACGUUUAU	chr11:34121856-34122105(+)$1	249	164	191	23.9482
UUAUUAAGGAAUAUUUUAACAUAAUAA	chr4:99993264-99993549(-)$1	285	200	227	25.0574
UACACAGUUCUUUUUGUUUUUGUGUGU	chr2:61705150-61705452(-)$1	302	100	127	24.4889
UUCAGACGGAAAGGGCGAGGGAUGAAG	chr9:138773485-138773771(-)$1	286	6	33	23.7513
UAUUAGAUGAAAUGUGAGGAUCUUGUU	chr14:69847010-69847345(-)$1	335	218	245	21.8742
GGGUUGAUCUAUAAACACUGUCAGACU	chr2:150426196-150426476(-)$1	280	33	60	22.6077
AUGUAUCUUUCUAUCCAUCUAGAUGCC	chr22:49871544-49871787(-)$1	243	189	216	24.4686
CGAUCUGGAAAAGGACCAGCAGAAACU	chr15:64791680-64791938(+)$1	258	57	84	23.6248
GUAAAUACUUAACACUCAAAUAUUAAC	chr1:25568858-25569131(-)$1	273	180	207	24.2799
GACCAGAUGAUAAAAGAAUUCUGGAAU	chr10:103546064-103546332(-)$1	268	15	42	23.9621
GACCUAAUAUGUUUUCUUCCUUAGAUC	chr3:169866827-169867132(-)$1	305	76	103	23.8685
auuauauucuauuuuuuaaagauauaa	chr2:62099491-62099717(-)$1	226	172	199	24.0062
GUGACUUAGAGUUCUGUAAUAACUUAU	chr12:51453973-51454248(+)$1	275	140	167	23.9814
GCAUGGAAACAAGAUGAAAUUCCAUUU	chrX:77381536-77381744(+)$1	208	142	169	23.8083
UGAUCUGUGCAGGGUAUUAACGUGUCA	chr17:79477193-79477433(-)$1	240	66	93	23.8583
CUGUUUCAGACAAAAUAACAUGGAACA	chr22:49983783-49984071(-)$1	288	167	194	23.8570
AGAAUGGCGACCUCUCUUUAGCUCAAU	chrX:151121678-151121911(-)$1	233	72	99	22.2251
CACAGAAGAAGAGACUGAGGUUCUGAG	chr16:89039058-89039298(-)$1	240	159	186	24.2057
CGUCUACGUGAGGGGUGAUAAGUGACG	chr17:16284334-16284558(+)$1	224	2	29	22.0510
AGUCUGCAUUUUUUUAAACCAGCAAUU	chr14:92583744-92584087(-)$1	343	249	276	23.7242
UGGGUAGUACUGUUUACCUAACUACCU	chr12:76440893-76441162(-)$1	269	133	160	24.2328
GUCCGCUUUUAACUUGGACUAGUGUAA	chr17:39846976-39847280(+)$1	304	218	245	23.5152
AGACAGGUGGGUUCCUGUAGCCUGUUG	chr22:20099758-20100050(-)$1	292	133	160	24.1746
UUAUAGAAUUAGUUUAAUUUUUUAUGG	chr18:75684362-75684610(-)$1	248	48	75	23.7191
GGCUGGUGUGGUACAGAGAAGCCAGCU	chr2:85771997-85772285(+)$1	288	236	263	25.1350
CACAGCUGGGGGUUGGUGAGCAGUCUU	chr22:49957873-49958124(-)$1	251	91	118	23.2853
CUUCUCUCCCCUCUUUUCAAAUGAGAA	chr1:173835365-173835604(-)$1	239	19	46	21.9494
UAUUUUCUUCAUUUUGUUCUGAAAUUA	chr6:44221388-44221593(+)$1	205	169	196	24.2799
UUUUCAAUAAAAUAUCAAAGUUGAAGA	chr11:134118111-134118460(-)$1	349	260	287	23.7191
UCUGCCUGUUACAAAUAUCAAGGAAGA	chr5:43705378-43705688(+)$1	310	5	32	24.4019
UGCUUUAGUCUGUAAAAUUCUAAAGGA	chr16:66836727-66837015(-)$1	288	163	190	23.8650
GAAUGGCAAGGUGACAAAAAGCUAUUC	chr7:105891388-105891636(-)$1	248	20	47	25.1350
ugacuuugaaccaaaaauuacaaggca	chr7:119346005-119346294(-)$1	289	173	200	22.4864
UUGGUCCUUGAACAAGAUGUGGGCCUU	chr16:56395863-56396165(-)$1	302	182	209	24.5415
GUGGAAAACCCAGUGUCCAUCUUUCCA	chr1:12072703-12072959(+)$1	256	21	48	23.9482
caaauucaacauccauucaugaauuua	chr8:91269499-91269814(+)$1	315	6	33	22.3933

#DB
..(((.((...........)))))...	chr16:87879924-87880172(-)$1	1	64	91	23.2633
(((((.((............))..)))	chr2:176042804-176043061(-)$1	1	13	40	22.9171
)((((((............))))))))	chr16:89970636-89970921(+)$1	1	179	206	22.9750
((.((((.............)))).))	chr1:25568668-25569018(-)$1	1	67	94	24.2799
(((((((.............)))))..	chr12:56735520-56735788(-)$1	1	44	71	23.9125
(.((((((...........)))))).)	chr19:8553713-8553986(+)$1	1	77	104	23.9431
)((((((.............)))))).	chr4:760823-761092(-)$1	1	139	166	22.4305
(.(((.((...........)).)))))	chr6:31802812-31803048(+)$1	1	146	173	23.2249
..((((((............)))))).	chr9:127998638-127998851(-)$1	1	26	53	24.3408
(.(((((..............))))).	chr17:74730240-74730502(-)$1	1	98	125	23.5354
.(((((................)))))	chr16:24227115-24227388(+)$1	1	153	180	22.1728
)(((((((.............))))))	chr6:75949929-75950200(-)$1	1	158	185	24.1185
((.((((............)))).)))	chr9:33953315-33953572(-)$1	1	79	106	23.3897
(((((((.............)))..))	chr22:20098330-20098574(+)$1	1	142	169	24.6416
(((((((..............))))))	chr12:49521551-49521800(-)$1	1	215	242	23.4814
(((..(((...........)))..)))	chr2:55461995-55462198(+)$1	1	82	109	23.4869
(((.(((..............))))))	chr3:49397446-49397704(-)$1	1	131	158	23.0775
(.((((((...........))))))))	chrX:77381483-77381726(+)$1	1	195	222	23.8083
(.((((((...........))))))))	chr16:56448073-56448346(-)$1	1	50	77	23.2887
.(((((................)))))	chr22:49870289-49870528(-)$1	1	119	146	22.2562
((.(((................)))..	chrX:154005736-154005999(+)$1	1	226	253	22.1303
((((((................)))))	chr8:124221615-124221871(+)$1	1	33	60	22.1505
..(((.(............).)))..)	chr3:25639608-25639854(-)$1	1	185	212	24.0322
((((................)))))..	chr17:47787685-47787928(-)$1	1	136	163	21.5851
))((((((............))).)))	chrX:123234378-123234716(+)$1	1	227	254	22.9672
))((((((..............)))))	chr6:150045391-150045697(-)$1	1	248	275	22.0018
.(((((((...........))))))).	chr20:34291514-34291776(-)$1	1	228	255	22.3933
((((((((...........)))).)))	chr21:44263120-44263396(-)$1	1	76	103	23.1665
.((..(.(...........).)..)))	chr16:89025105-89025386(-)$1	1	63	90	22.4842
..(((((..............))))).	chr16:88957724-88958012(-)$1	1	111	138	23.5703
))(((((..............))))).	chr22:50039320-50039545(-)$1	1	189	216	22.5683
(((((((..............))))))	chr11:34121856-34122105(+)$1	1	164	191	23.9482
((((((.(...........).))))))	chr4:99993264-99993549(-)$1	1	200	227	25.0574
(((((((............))))))))	chr2:61705150-61705452(-)$1	1	100	127	24.4889
((((..(............)..)))))	chr9:138773485-138773771(-)$1	1	6	33	23.7513
.((.((((...........)))).)))	chr14:69847010-69847345(-)$1	1	218	245	21.8742
((..((((...........))))..))	chr2:150426196-150426476(-)$1	1	33	60	22.6077
(.((((((............)))))).	chr22:49871544-49871787(-)$1	1	189	216	24.4686
((.((((............))))...)	chr15:64791680-64791938(+)$1	1	57	84	23.6248
((.((((.............)))).))	chr1:25568858-25569131(-)$1	1	180	207	24.2799
..(((((............))))).))	chr10:103546064-103546332(-)$1	1	15	42	23.9621
((.((((.............)))).))	chr3:169866827-169867132(-)$1	1	76	103	23.8685
((((((((............))))).)	chr2:62099491-62099717(-)$1	1	172	199	24.0062
((((.(((...........))).))))	chr12:51453973-51454248(+)$1	1	140	167	23.9814
(.((((((...........))))))))	chrX:77381536-77381744(+)$1	1	142	169	23.8083
((((.(((...........))).))))	chr17:79477193-79477433(-)$1	1	66	93	23.8583
.(((((((............)))))))	chr22:49983783-49984071(-)$1	1	167	194	23.8570
((((((((............)).))..	chrX:151121678-151121911(-)$1	1	72	99	22.2251
(.(((((.............))))).)	chr16:89039058-89039298(-)$1	1	159	186	24.2057
((((.((..............))))))	chr17:16284334-16284558(+)$1	1	2	29	22.0510
(((.(((..............))))))	chr14:92583744-92584087(-)$1	1	249	276	23.7242
((((((((............)))))).	chr12:76440893-76441162(-)$1	1	133	160	24.2328
((.((((.............))))..)	chr17:39846976-39847280(+)$1	1	218	245	23.5152
.(((((((...........))))))).	chr22:20099758-20100050(-)$1	1	133	160	24.1746
((((((((...........))))))))	chr18:75684362-75684610(-)$1	1	48	75	23.7191
(((((((.............)))))))	chr2:85771997-85772285(+)$1	1	236	263	25.1350
((((((((............))))..)	chr22:49957873-49958124(-)$1	1	91	118	23.2853
((((((................)))))	chr1:173835365-173835604(-)$1	1	19	46	21.9494
((.((((.............)))).))	chr6:44221388-44221593(+)$1	1	169	196	24.2799
((((((((...........))))))))	chr11:134118111-134118460(-)$1	1	260	287	23.7191
(((.(((.............))).)))	chr5:43705378-43705688(+)$1	1	5	32	24.4019
(.((((((...........)))))).)	chr16:66836727-66837015(-)$1	1	163	190	23.8650
(((((((.............)))))))	chr7:105891388-105891636(-)$1	1	20	47	25.1350
)))(((((............)))))..	chr7:119346005-119346294(-)$1	1	173	200	22.4864
..(((((.............)))))..	chr16:56395863-56396165(-)$1	1	182	209	24.5415
(((((((..............))))))	chr1:12072703-12072959(+)$1	1	21	48	23.9482
.(((((((...........))))))).	chr8:91269499-91269814(+)$1	1	6	33	22.3933

#PSSM
g : 0.20	c : 0.14	e : 0.11	f : 0.08	! : 0.07	# : 0.05	i : 0.05	b : 0.04	d : 0.04	: : 0.04	[ : 0.02	I : 0.01	H : 0.01	h : 0.01	= : 0.01	a : 0.01	
g : 0.26	e : 0.16	[ : 0.13	f : 0.11	c : 0.07	! : 0.05	i : 0.05	# : 0.02	b : 0.02	d : 0.01	H : 0.01	h : 0.01	= : 0.01	
f : 0.25	e : 0.23	g : 0.20	[ : 0.11	c : 0.07	i : 0.04	b : 0.02	! : 0.01	= : 0.01	
e : 0.23	f : 0.23	g : 0.17	d : 0.10	c : 0.07	[ : 0.05	i : 0.04	! : 0.04	= : 0.01	
e : 0.19	f : 0.17	d : 0.16	g : 0.16	c : 0.13	i : 0.04	! : 0.04	[ : 0.04	y : 0.01	b : 0.01	
f : 0.17	e : 0.17	d : 0.16	g : 0.16	c : 0.13	[ : 0.05	i : 0.04	b : 0.02	y : 0.01	a : 0.01	! : 0.01	
f : 0.16	d : 0.16	g : 0.14	e : 0.13	c : 0.11	y : 0.08	b : 0.07	i : 0.04	a : 0.02	[ : 0.02	
v : 0.19	f : 0.13	w : 0.13	u : 0.10	y : 0.08	g : 0.07	b : 0.05	c : 0.05	d : 0.05	a : 0.02	e : 0.02	i : 0.02	
t : 0.29	u : 0.25	v : 0.20	w : 0.14	y : 0.08	
t : 0.29	u : 0.25	v : 0.20	w : 0.14	y : 0.08	
t : 0.29	u : 0.25	v : 0.20	w : 0.14	y : 0.08	
t : 0.29	u : 0.25	v : 0.20	w : 0.14	y : 0.08	
t : 0.29	u : 0.25	v : 0.20	w : 0.14	y : 0.08	
t : 0.29	u : 0.25	v : 0.20	w : 0.14	y : 0.08	
t : 0.29	u : 0.25	v : 0.20	w : 0.14	y : 0.08	
t : 0.29	u : 0.25	v : 0.20	w : 0.14	y : 0.08	
t : 0.29	u : 0.25	v : 0.20	w : 0.14	y : 0.08	
t : 0.29	u : 0.25	v : 0.20	w : 0.14	y : 0.08	
t : 0.29	u : 0.25	v : 0.20	w : 0.14	y : 0.08	
v : 0.20	u : 0.14	w : 0.14	f : 0.08	y : 0.08	d : 0.07	a : 0.05	g : 0.05	c : 0.04	b : 0.02	i : 0.02	e : 0.01	
d : 0.16	f : 0.14	w : 0.14	e : 0.10	g : 0.10	c : 0.08	y : 0.07	b : 0.05	] : 0.04	i : 0.02	v : 0.01	2 : 0.01	
d : 0.16	g : 0.16	c : 0.14	f : 0.14	e : 0.14	y : 0.07	b : 0.04	i : 0.04	] : 0.01	w : 0.01	a : 0.01	2 : 0.01	
f : 0.19	e : 0.19	d : 0.16	g : 0.16	c : 0.13	2 : 0.04	i : 0.04	] : 0.04	b : 0.01	
e : 0.22	f : 0.20	g : 0.16	c : 0.08	d : 0.08	2 : 0.07	] : 0.07	i : 0.04	3 : 0.01	b : 0.01	
e : 0.23	f : 0.23	g : 0.17	] : 0.07	c : 0.07	2 : 0.07	i : 0.04	b : 0.04	3 : 0.02	
g : 0.25	e : 0.16	f : 0.14	2 : 0.10	c : 0.08	] : 0.05	i : 0.05	3 : 0.04	b : 0.02	F : 0.01	d : 0.01	: : 0.01	
g : 0.19	e : 0.16	c : 0.11	f : 0.11	2 : 0.08	: : 0.07	] : 0.05	i : 0.05	3 : 0.02	d : 0.02	a : 0.02	F : 0.01	b : 0.01	

#score	1572.0277635991297
#seq	67
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_CDS_m2_run2.txt

#BEAR
g[ccc[bb[cccrrrrrrrrrccc22bb22ccc5	chr18:13008384-13008684(+)$1	300	170	204	12.2789
e!!eeeee^^^^^^^^^^^^^^^^^^^^eeeee]	chrX:53575082-53575334(-)$1	252	116	150	18.7895
%ffffffxxxxxxxxxxxxxxxffffffffffff	chr5:145522333-145522567(-)$1	234	18	52	14.9555
eeeeee"""eeeee^^^^^^^^^^^^^^^^^^^^	chr3:150285640-150285894(+)$1	254	66	100	17.2923
!ffffff^^^^^^^^^^^^^^^^^^^^^ffffff	chr8:90926320-90926541(+)$1	221	35	69	19.3672
ffffff"""ffffffarrrrrrrrra]ffffff]	chr6:34825056-34825343(+)$1	287	193	227	12.0824
eeee####ccc!!aooooooa22ccc4444eeee	chr17:57262727-57262995(+)$1	268	214	248	11.6372
"bbbb"""ddddrrrrrrrrrdddd333bb]bbd	chr2:26456983-26457247(-)$1	264	160	194	13.3258
iiiiiii!!cccrrrrrrrrrccc]iiiiiiiii	chr3:156261999-156262242(-)$1	243	180	214	13.7193
eeee####ddddrrrrrrrrrdddd55555eeee	chr10:70405546-70405810(+)$1	264	229	263	11.8696
[bbzzzzzzzzzzzzzzzzzbbccc333bb]ddd	chr11:34113495-34113703(+)$1	208	60	94	13.4484
eeeeeccczzzzzzzzzzzzzzzzzccc]eeeee	chr18:47017674-47017877(-)$1	203	129	163	15.6943
"ffffff"""bbrrrrrrrrrbb333ffffffdd	chr1:205589557-205589821(-)$1	264	108	142	14.3400
dd####bb[cccrrrrrrrrrccc]bb]dddd44	chr1:31438803-31439086(-)$1	283	176	210	11.8691
ggggggg!!ddddqqqqqqqqdddd22ggggggg	chr5:78964614-78964855(+)$1	241	38	72	9.9258
bb[cccxxxxxxxxxxxxxxxccc]bb]ffffff	chr2:223497815-223498115(-)$1	300	125	159	15.6636
:::ccc!!cccxxxxxxxxxxxxxxxccc22ccc	chr12:48468103-48468376(-)$1	273	179	213	14.9155
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^f	chr9:86276708-86276936(-)$1	228	55	89	19.3786
eeeeeeeeecccxxxxxxxxxxxxxxxccc]eee	chr5:139002852-139003056(+)$1	204	130	164	17.9604
eeeeeeeeecccxxxxxxxxxxxxxxxccc]eee	chr5:139002858-139003078(+)$1	220	124	158	17.9604
eeeee####cccrrrrrrrrrccc333eeeee::	chr1:113460054-113460300(-)$1	246	4	38	14.7572
e[bb!!a[ddddrrrrrrrrrdddd333a22bb]	chr14:100743688-100743950(+)$1	262	180	214	13.4045
eeeee!!ffffffxxxxxxxxxxxxxxxffffff	chr12:46244362-46244622(+)$1	260	210	244	16.5025
[cccbb"""cccqqqqqqqqccc333bb]ccc]d	chrX:30872608-30872913(-)$1	305	59	93	11.1562
eeeccc"""cccrrrrrrrrrccc333ccc]eee	chr6:43481009-43481273(-)$1	264	60	94	17.0901
FFFFeeeeecccxxxxxxxxxxxxxxxccc]eee	chr17:28793208-28793492(+)$1	284	82	116	16.4067
:===========rrrrrrrrr===========cc	chr3:100451250-100451503(+)$1	253	53	87	11.3308
=[ccc$$$$$cccqqqqqqqqccc333ccc]===	chr6:53156553-53156822(-)$1	269	19	53	12.4023
d!!eeeee[cccrrrrrrrrrccc22eeeee22d	chr6:53140921-53141152(-)$1	231	170	204	13.0039
$eeeee"""ccc[bboooooobbccc22eeeee4	chr2:26455022-26455247(-)$1	225	99	133	10.1096
ffffffzzzzzzzzzzzzzzzzzffffff]ffff	chr12:6879009-6879264(+)$1	255	66	100	14.7357
!!dddd"""dddd^^^^^^^^^^^^^^^^^^ddd	chr10:64966661-64966955(-)$1	294	22	56	17.7257
ffffff"""cccrrrrrrrrrccc4444ffffff	chr5:134010252-134010535(+)$1	283	41	75	17.1275
ffffff[eeeee^^^^^^^^^^^^^^^^^^^eee	chr8:17132275-17132567(+)$1	292	0	34	17.7283
ddd[eeeee^^^^^^^^^^^^^^^^^^^eeeee]	chr2:136418811-136419065(+)$1	254	183	217	17.7163
:eeeee^^^^^^^^^^^^^^^^^^^^eeeee::F	chr10:70405721-70406039(+)$1	318	120	154	15.0845
"ffffff"""ddddoooooodddd22ffffff44	chr17:60112723-60113034(-)$1	311	212	246	10.0151
eeeeeeeeecccxxxxxxxxxxxxxxxccc]eee	chr5:139002878-139003092(+)$1	214	104	138	17.9604
##ccc####ddddqqqqqqqqdddd]ccc4444d	chr11:125513909-125514184(+)$1	275	164	198	10.7387
iiiiii^^^^^^^^^^^^^^^^^^^^^^iiiiii	chr3:128356696-128357037(-)$1	341	59	93	19.0295
[ffffff[ddddrrrrrrrrrdddd]ffffff]c	chr2:128750674-128750948(-)$1	274	14	48	12.9526
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chr10:5827089-5827336(-)$1	247	87	121	18.4602
ffffff!!bb^^^^^^^^^^^^^^^^^^^^^^^b	chr17:65336874-65337189(-)$1	315	107	141	18.2435
[a[ccc!!ddddrrrrrrrrrdddd22ccc22a]	chr12:92537983-92538303(-)$1	320	126	160	13.7504
g:ccc[bb^^^^^^^^^^^^^^^^^^^^^^^bb]	chr9:33953182-33953433(-)$1	251	62	96	17.2932
gggggg!!a[ddddoooooodddd]a22gggggg	chr17:49371166-49371419(+)$1	253	163	197	9.6581
eeeccc####ccc!!ccclllccc4444ccc333	chr6:31603955-31604221(+)$1	266	57	91	11.9308
ffffff^^^^^^^^^^^^^^^^^^^^^^ffffff	chr1:51204433-51204651(-)$1	218	180	214	19.5514
eeeee####dddd^^^^^^^^^^^^^^^^^^ddd	chr15:85326226-85326486(+)$1	260	90	124	18.4585

#otherMatches

#Seq PSSM
GAGCCAGCCGGAGCUACAGAAUCCUUGCAGGGCC	chr18:13008384-13008684(+)$1	300	170	204	12.2789
UCACACAGCAGCGGACCAAAGAAACAAACUGUGA	chrX:53575082-53575334(-)$1	252	116	150	18.7895
AGCAGGAGUUUGAAUUCUGGUAUCCUGUUGAUCU	chr5:145522333-145522567(-)$1	234	18	52	14.9555
GGAAGUAAAGGUGCACCUUCAUUUGUUAGAUUAU	chr3:150285640-150285894(+)$1	254	66	100	17.2923
CGUAUUUAUCAUCAGAAGCAAUACACCCAAAUAC	chr8:90926320-90926541(+)$1	221	35	69	19.3672
AAGCAUCUAGGCUGGCUAUUUUUCUGUCUAGCUC	chr6:34825056-34825343(+)$1	287	193	227	12.0824
aaagcaaaucuggaauuagguaaggagacacuuu	chr17:57262727-57262995(+)$1	268	214	248	11.6372
GAGGUAUAGAUAUUCUAAAGUUAUUGAGACACUG	chr2:26456983-26457247(-)$1	264	160	194	13.3258
GUCAAGAAACAGUAGUUCAUUUUGGUUUUGACUU	chr3:156261999-156262242(-)$1	243	180	214	13.7193
ACAAAAAAGUUGAAAGUACACCAACAAGCCUUGU	chr10:70405546-70405810(+)$1	264	229	263	11.8696
CUCACCAAGUAGAACAAACAGAGCUUCAGCAAGA	chr11:34113495-34113703(+)$1	208	60	94	13.4484
CAGUUCCUCAUGUUCCACUCAAAAAAGGUAGCUG	chr18:47017674-47017877(-)$1	203	129	163	15.6943
CUUUGAACUCCUCCAAUGUAAAGCUUUUCAAAUU	chr1:205589557-205589821(-)$1	264	108	142	14.3400
GCCAACACAUCCUUGGGAUUCGGAAGUAGCAGUU	chr1:31438803-31439086(-)$1	283	176	210	11.8691
UAAAGUUUCUUAGUGUGUGUUUUAAAUGGCUUUA	chr5:78964614-78964855(+)$1	241	38	72	9.9258
GAAAACAAACCCCUGUAUCCAGUUAUCUAUGAUA	chr2:223497815-223498115(-)$1	300	125	159	15.6636
AAAGAUUCUGGUACUCUUCAUCAUCCCCAUCAUC	chr12:48468103-48468376(-)$1	273	179	213	14.9155
UGGAUUAAUUUUUUUUUUCUUUAAUAGCUACAGA	chr9:86276708-86276936(-)$1	228	55	89	19.3786
AUCCCAAUCCAGAUGAUCCUUUAGUGCCUGAGAU	chr5:139002852-139003056(+)$1	204	130	164	17.9604
AUCCCAAUCCAGAUGAUCCUUUAGUGCCUGAGAU	chr5:139002858-139003078(+)$1	220	124	158	17.9604
AGUCUUCCAAACAAUUAAUCAGUUCCUGGACUUA	chr1:113460054-113460300(-)$1	246	4	38	14.7572
AAGUUUGCUCAGUCAACUAACCUGAAAUCUCACA	chr14:100743688-100743950(+)$1	262	180	214	13.4045
AAGGGUAGGGUUUCAGAACAUUGCACCAAAACCU	chr12:46244362-46244622(+)$1	260	210	244	16.5025
CAAGUGCAACCUUCCCAGUUGGGCCACAUCUUUA	chrX:30872608-30872913(-)$1	305	59	93	11.1562
CUGAAUGAAUUGGUAUAUUGACAGAAAAUUGCAG	chr6:43481009-43481273(-)$1	264	60	94	17.0901
CUCAAAUUGUAUUCUAUAUCCAUUAAUGUAUCAG	chr17:28793208-28793492(+)$1	284	82	116	16.4067
UAUAGAUAAAAAGGAAACAAGUUUUUGUUUAUUC	chr3:100451250-100451503(+)$1	253	53	87	11.3308
GUGAAUGuuuuuauauaucauuaauuuuuuuuaa	chr6:53156553-53156822(-)$1	269	19	53	12.4023
AUGAAGGUACUGUCUCUUUUUCAGAAACUUUAUU	chr6:53140921-53141152(-)$1	231	170	204	13.0039
GGUUGCCAUUUCAUGCCAAUACAGAAUAGCAACA	chr2:26455022-26455247(-)$1	225	99	133	10.1096
GGUCCCCACaggaggaggagaacggggcugagga	chr12:6879009-6879264(+)$1	255	66	100	14.7357
CCAGUGAGACUGAACCUAAUGCUAUAAAAAAUCA	chr10:64966661-64966955(-)$1	294	22	56	17.7257
CUUGUUUCUAGCAACACCACAGCUUACUAACAAG	chr5:134010252-134010535(+)$1	283	41	75	17.1275
GCUUCUCAGGGUUUUCCAUUUCUUCCUCCAUAUC	chr8:17132275-17132567(+)$1	292	0	34	17.7283
AGCCACACUUUUUUCCAUCUUCUAUUUCAGUGUU	chr2:136418811-136419065(+)$1	254	183	217	17.7163
AGAAGGGCACAAUACAACAGAAACCACCUUCAAG	chr10:70405721-70406039(+)$1	318	120	154	15.0845
UAGAUUAUUUUAUUAUAUUAGGUAUUUGAUCUUU	chr17:60112723-60113034(-)$1	311	212	246	10.0151
AUCCCAAUCCAGAUGAUCCUUUAGUGCCUGAGAU	chr5:139002878-139003092(+)$1	214	104	138	17.9604
UUGGUACAAGGGAUCAGCUUUUCCCAGCCCACAU	chr11:125513909-125514184(+)$1	275	164	198	10.7387
CUUACUUCUCUUGCCUUGUUCUUCCUUUAGUGGG	chr3:128356696-128357037(-)$1	341	59	93	19.0295
AAGUAAAGAAGAAAAUGACUAUUUUGUUUGCUAU	chr2:128750674-128750948(-)$1	274	14	48	12.9526
UCCUUUCUUCCAGUUACUUAGAUCAACCGUGUUA	chr10:5827089-5827336(-)$1	247	87	121	18.4602
GAGACCCAAGGAUCCAAAUAAUUUAUUAAAUGAC	chr17:65336874-65337189(-)$1	315	107	141	18.2435
GGGUUACCGUUGUAUUCGCAUCAACCAUAAAAUG	chr12:92537983-92538303(-)$1	320	126	160	13.7504
UUGUCUUCACAAAUUCGCAACACAACAAUCAGAU	chr9:33953182-33953433(-)$1	251	62	96	17.2932
GUUCAUACCAUGGAUUUUUCUCCGAGAAGUGGAU	chr17:49371166-49371419(+)$1	253	163	197	9.6581
CCCAGCCCCUCCCUCAGCACUGCUCUCUGGGUUA	chr6:31603955-31604221(+)$1	266	57	91	11.9308
UUGUAUAUAAACCUCAAAAUUAAAUCAAAUACAA	chr1:51204433-51204651(-)$1	218	180	214	19.5514
CUUCAACCAGUUCAGUCCAAUCUCCAGCCCAGAA	chr15:85326226-85326486(+)$1	260	90	124	18.4585

#DB
(.(((.((.(((.........)))..))..))).	chr18:13008384-13008684(+)$1	1	170	204	12.2789
(..(((((....................))))).	chrX:53575082-53575334(-)$1	1	116	150	18.7895
.((((((...............))))))))))))	chr5:145522333-145522567(-)$1	1	18	52	14.9555
((((((...(((((....................	chr3:150285640-150285894(+)$1	1	66	100	17.2923
.((((((.....................))))))	chr8:90926320-90926541(+)$1	1	35	69	19.3672
((((((...(((((((.........).)))))).	chr6:34825056-34825343(+)$1	1	193	227	12.0824
((((....(((..(......)..)))....))))	chr17:57262727-57262995(+)$1	1	214	248	11.6372
.((((...((((.........))))...)).)))	chr2:26456983-26457247(-)$1	1	160	194	13.3258
(((((((..(((.........))).)))))))))	chr3:156261999-156262242(-)$1	1	180	214	13.7193
((((....((((.........)))).....))))	chr10:70405546-70405810(+)$1	1	229	263	11.8696
.((.................)))))...)).)))	chr11:34113495-34113703(+)$1	1	60	94	13.4484
((((((((.................))).)))))	chr18:47017674-47017877(-)$1	1	129	163	15.6943
.((((((...((.........))...))))))))	chr1:205589557-205589821(-)$1	1	108	142	14.3400
((....((.(((.........))).)).))))..	chr1:31438803-31439086(-)$1	1	176	210	11.8691
(((((((..((((........))))..)))))))	chr5:78964614-78964855(+)$1	1	38	72	9.9258
((.(((...............))).)).))))))	chr2:223497815-223498115(-)$1	1	125	159	15.6636
...(((..(((...............)))..)))	chr12:48468103-48468376(-)$1	1	179	213	14.9155
((((((...........................)	chr9:86276708-86276936(-)$1	1	55	89	19.3786
((((((((((((...............))).)))	chr5:139002852-139003056(+)$1	1	130	164	17.9604
((((((((((((...............))).)))	chr5:139002858-139003078(+)$1	1	124	158	17.9604
(((((....(((.........)))...)))))..	chr1:113460054-113460300(-)$1	1	4	38	14.7572
(.((..(.((((.........))))...)..)).	chr14:100743688-100743950(+)$1	1	180	214	13.4045
(((((..((((((...............))))))	chr12:46244362-46244622(+)$1	1	210	244	16.5025
.(((((...(((........)))...)).))).)	chrX:30872608-30872913(-)$1	1	59	93	11.1562
((((((...(((.........)))...))).)))	chr6:43481009-43481273(-)$1	1	60	94	17.0901
((((((((((((...............))).)))	chr17:28793208-28793492(+)$1	1	82	116	16.4067
.(((((((((((.........)))))))))))((	chr3:100451250-100451503(+)$1	1	53	87	11.3308
(.(((.....(((........)))...))).)))	chr6:53156553-53156822(-)$1	1	19	53	12.4023
(..(((((.(((.........)))..)))))..)	chr6:53140921-53141152(-)$1	1	170	204	13.0039
.(((((...(((.((......)))))..))))).	chr2:26455022-26455247(-)$1	1	99	133	10.1096
((((((.................)))))).))))	chr12:6879009-6879264(+)$1	1	66	100	14.7357
..((((...((((..................)))	chr10:64966661-64966955(-)$1	1	22	56	17.7257
((((((...(((.........)))....))))))	chr5:134010252-134010535(+)$1	1	41	75	17.1275
((((((.(((((...................)))	chr8:17132275-17132567(+)$1	1	0	34	17.7283
(((.(((((...................))))).	chr2:136418811-136419065(+)$1	1	183	217	17.7163
.(((((....................)))))..)	chr10:70405721-70406039(+)$1	1	120	154	15.0845
.((((((...((((......))))..))))))..	chr17:60112723-60113034(-)$1	1	212	246	10.0151
((((((((((((...............))).)))	chr5:139002878-139003092(+)$1	1	104	138	17.9604
..(((....((((........)))).)))....)	chr11:125513909-125514184(+)$1	1	164	198	10.7387
((((((......................))))))	chr3:128356696-128357037(-)$1	1	59	93	19.0295
.((((((.((((.........)))).)))))).)	chr2:128750674-128750948(-)$1	1	14	48	12.9526
............................))))))	chr10:5827089-5827336(-)$1	1	87	121	18.4602
((((((..((.......................)	chr17:65336874-65337189(-)$1	1	107	141	18.2435
.(.(((..((((.........))))..)))..).	chr12:92537983-92538303(-)$1	1	126	160	13.7504
).(((.((.......................)).	chr9:33953182-33953433(-)$1	1	62	96	17.2932
((((((..(.((((......)))).)..))))))	chr17:49371166-49371419(+)$1	1	163	197	9.6581
((((((....(((..(((...)))....)))...	chr6:31603955-31604221(+)$1	1	57	91	11.9308
((((((......................))))))	chr1:51204433-51204651(-)$1	1	180	214	19.5514
(((((....((((..................)))	chr15:85326226-85326486(+)$1	1	90	124	18.4585

#PSSM
e : 0.28	f : 0.14	g : 0.08	[ : 0.08	" : 0.06	d : 0.06	: : 0.06	! : 0.04	i : 0.04	% : 0.02	b : 0.02	F : 0.02	= : 0.02	$ : 0.02	# : 0.02	^ : 0.02	
e : 0.28	f : 0.24	[ : 0.06	! : 0.06	b : 0.06	i : 0.04	d : 0.04	g : 0.04	: : 0.04	c : 0.02	F : 0.02	= : 0.02	# : 0.02	^ : 0.02	a : 0.02	
e : 0.28	f : 0.24	c : 0.10	b : 0.06	! : 0.04	i : 0.04	g : 0.04	[ : 0.04	d : 0.04	# : 0.02	: : 0.02	F : 0.02	= : 0.02	^ : 0.02	
e : 0.28	f : 0.24	c : 0.20	b : 0.04	i : 0.04	g : 0.04	z : 0.02	# : 0.02	F : 0.02	= : 0.02	d : 0.02	[ : 0.02	^ : 0.02	
e : 0.28	f : 0.24	c : 0.18	# : 0.06	b : 0.04	i : 0.04	g : 0.04	z : 0.02	! : 0.02	= : 0.02	d : 0.02	^ : 0.02	
f : 0.24	e : 0.20	# : 0.12	c : 0.12	[ : 0.04	i : 0.04	g : 0.04	! : 0.04	" : 0.02	z : 0.02	b : 0.02	= : 0.02	$ : 0.02	d : 0.02	^ : 0.02	
" : 0.16	e : 0.14	# : 0.12	f : 0.10	! : 0.10	^ : 0.10	b : 0.06	z : 0.04	i : 0.02	c : 0.02	g : 0.02	x : 0.02	a : 0.02	= : 0.02	$ : 0.02	[ : 0.02	
" : 0.20	e : 0.16	^ : 0.12	# : 0.12	! : 0.12	b : 0.06	x : 0.04	z : 0.04	[ : 0.04	c : 0.02	f : 0.02	= : 0.02	$ : 0.02	
" : 0.18	^ : 0.16	e : 0.12	d : 0.10	# : 0.08	[ : 0.06	z : 0.06	x : 0.04	c : 0.04	! : 0.04	f : 0.02	= : 0.02	$ : 0.02	b : 0.02	a : 0.02	
c : 0.30	^ : 0.18	d : 0.18	z : 0.06	x : 0.04	e : 0.04	f : 0.04	" : 0.04	= : 0.02	$ : 0.02	b : 0.02	[ : 0.02	# : 0.02	
c : 0.34	d : 0.22	^ : 0.20	z : 0.06	x : 0.04	e : 0.04	f : 0.04	b : 0.02	= : 0.02	
c : 0.30	d : 0.22	^ : 0.20	x : 0.06	z : 0.06	e : 0.04	f : 0.04	! : 0.02	b : 0.02	= : 0.02	
r : 0.28	^ : 0.22	x : 0.14	d : 0.12	z : 0.06	f : 0.04	c : 0.04	e : 0.02	! : 0.02	q : 0.02	[ : 0.02	
r : 0.28	^ : 0.26	x : 0.16	q : 0.08	z : 0.06	d : 0.04	e : 0.02	f : 0.02	a : 0.02	b : 0.02	! : 0.02	
r : 0.28	^ : 0.28	x : 0.16	q : 0.08	o : 0.06	z : 0.06	f : 0.02	b : 0.02	! : 0.02	
r : 0.28	^ : 0.28	x : 0.16	o : 0.08	q : 0.08	z : 0.06	a : 0.02	c : 0.02	
r : 0.30	^ : 0.28	x : 0.16	o : 0.08	q : 0.08	z : 0.06	c : 0.02	
r : 0.30	^ : 0.28	x : 0.16	o : 0.08	q : 0.08	z : 0.06	c : 0.02	
r : 0.30	^ : 0.28	x : 0.16	o : 0.08	q : 0.08	z : 0.06	l : 0.02	
r : 0.30	^ : 0.28	x : 0.16	o : 0.08	q : 0.08	z : 0.06	l : 0.02	
r : 0.30	^ : 0.28	x : 0.16	q : 0.06	z : 0.04	d : 0.04	a : 0.02	b : 0.02	c : 0.02	o : 0.02	l : 0.02	
^ : 0.28	c : 0.22	d : 0.18	x : 0.14	b : 0.06	z : 0.04	r : 0.02	2 : 0.02	= : 0.02	
^ : 0.28	c : 0.24	d : 0.18	x : 0.12	z : 0.04	b : 0.04	f : 0.02	r : 0.02	2 : 0.02	= : 0.02	
^ : 0.28	c : 0.26	d : 0.18	x : 0.12	f : 0.04	3 : 0.04	r : 0.02	z : 0.02	= : 0.02	
^ : 0.28	d : 0.14	x : 0.12	3 : 0.10	] : 0.08	2 : 0.06	c : 0.06	f : 0.04	4 : 0.04	r : 0.02	z : 0.02	= : 0.02	
^ : 0.28	3 : 0.16	x : 0.12	2 : 0.10	c : 0.06	f : 0.04	a : 0.04	b : 0.04	4 : 0.04	] : 0.04	i : 0.02	5 : 0.02	= : 0.02	
^ : 0.26	3 : 0.12	f : 0.10	x : 0.10	b : 0.08	2 : 0.08	4 : 0.06	c : 0.06	e : 0.04	] : 0.02	i : 0.02	5 : 0.02	= : 0.02	
^ : 0.26	c : 0.20	f : 0.12	4 : 0.06	3 : 0.06	e : 0.06	b : 0.04	] : 0.04	2 : 0.04	i : 0.02	5 : 0.02	g : 0.02	x : 0.02	= : 0.02	
f : 0.24	c : 0.20	^ : 0.14	e : 0.12	b : 0.04	i : 0.04	] : 0.04	g : 0.04	2 : 0.02	4 : 0.02	5 : 0.02	d : 0.02	a : 0.02	= : 0.02	
f : 0.22	c : 0.18	e : 0.14	^ : 0.14	2 : 0.06	4 : 0.04	b : 0.04	i : 0.04	g : 0.04	5 : 0.02	d : 0.02	= : 0.02	] : 0.02	
f : 0.24	e : 0.18	] : 0.16	^ : 0.14	c : 0.06	2 : 0.06	i : 0.04	g : 0.04	d : 0.02	= : 0.02	4 : 0.02	
e : 0.26	f : 0.24	d : 0.08	c : 0.06	^ : 0.06	b : 0.06	i : 0.04	g : 0.04	= : 0.04	2 : 0.04	: : 0.02	4 : 0.02	3 : 0.02	
e : 0.24	f : 0.18	d : 0.08	c : 0.06	^ : 0.06	b : 0.06	4 : 0.06	i : 0.04	g : 0.04	: : 0.04	] : 0.04	= : 0.02	2 : 0.02	a : 0.02	3 : 0.02	
f : 0.18	e : 0.18	d : 0.16	] : 0.12	4 : 0.06	c : 0.06	i : 0.04	g : 0.04	5 : 0.02	^ : 0.02	: : 0.02	= : 0.02	F : 0.02	b : 0.02	3 : 0.02	

#score	730.800825997841
#seq	49
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_transcript_m3_run1.txt

#BEAR
ffffffaooooooa]fff	chr1:110174466-110174739(+)$1	273	140	158	10.8091
ffeeeeeooooooeeeee	chr2:166846138-166846412(-)$1	274	151	169	13.4380
b[eeeeeooooooeeeee	chr19:10802462-10802730(+)$1	268	61	79	13.6565
gggggggooooooggggg	chr16:2652758-2653015(+)$1	257	233	251	11.2894
ggggg[aooooooa]ggg	chr3:52842587-52842843(+)$1	256	167	185	11.1057
cceeeeeooooooeeeee	chr3:141644439-141644769(+)$1	330	257	275	13.5377
BBeeeeeooooooeeeee	chr21:46932320-46932571(+)$1	251	10	28	11.9826
gggggggooooooggggg	chr20:61303393-61303675(+)$1	282	156	174	11.2894
##eeeeeooooooeeeee	chr16:31202774-31203018(+)$1	244	185	203	13.8119
ff[ddddoooooodddd2	chr10:75531200-75531505(+)$1	305	170	188	10.9934
[dddd[aooooooa]ddd	chr22:46753021-46753301(+)$1	280	142	160	10.7031
hheeeeeooooooeeeee	chr2:178094949-178095241(-)$1	292	18	36	13.0260
[ffffffoooooofffff	chr3:132395294-132395576(+)$1	282	4	22	11.1003
bb[ddddoooooodddd]	chr3:33038276-33038535(-)$1	259	17	35	11.0025
cc[ddddoooooodddd]	chr6:138411904-138412148(-)$1	244	145	163	11.3845
eeee[bboooooobbeee	chr4:187209735-187209993(+)$1	258	173	191	10.8507
%ffffffoooooofffff	chr9:6506793-6507141(+)$1	348	213	231	10.5930
b[eeeeeooooooeeeee	chr6:17615409-17615676(-)$1	267	220	238	13.6565
eeeeeeeooooooeeeee	chr11:47260381-47260658(+)$1	277	36	54	13.2943
GGeeeeeooooooeeeee	chr6:30593946-30594239(+)$1	293	9	27	12.7417
::eeeeeooooooeeeee	chr3:78963515-78963828(-)$1	313	132	150	11.9079
ff[ddddooooooddddf	chrX:23804118-23804382(+)$1	264	4	22	11.2385
c[eeeeeooooooeeeee	chr14:25442412-25442664(-)$1	252	158	176	13.8160
iiiiiiiooooooiiiii	chr3:184107068-184107369(+)$1	301	212	230	10.8575
!ffffffoooooofffff	chr16:80295989-80296252(-)$1	263	126	144	11.1563
""eeeeeooooooeeeee	chr3:156865508-156865812(-)$1	304	274	292	13.8642
::eeeeeooooooeeeee	chr10:99216700-99217040(+)$1	340	177	195	11.9079
###ddddoooooodddd4	chr2:20192576-20192838(-)$1	262	18	36	11.2705
"ffffffoooooofffff	chr6:33259591-33259902(-)$1	311	77	95	11.1558
$$eeeeeooooooeeeee	chr2:242707671-242708005(+)$1	334	278	296	13.4830
a[eeeeeooooooeeeee	chr16:71962350-71962622(+)$1	272	80	98	13.8479
gggggggooooooggggg	chr20:62374595-62374865(+)$1	270	208	226	11.2894
&ffffffoooooofffff	chr13:33091761-33092022(-)$1	261	84	102	10.5845
c[eeeeeooooooeeeee	chr2:27422575-27422818(-)$1	243	109	127	13.8160
a!!ddddoooooodddd2	chr9:135973671-135973917(-)$1	246	71	89	11.2868
=======oooooo=====	chr2:99216765-99217119(-)$1	354	301	319	11.1973
f!!ddddoooooodddd]	chr8:9629633-9629943(+)$1	310	218	236	11.4377
eeee[bboooooobbeee	chr2:160624786-160625155(+)$1	369	329	347	10.8507
eeeee[aooooooaeeee	chr11:61171848-61172112(-)$1	264	235	253	12.5098
d[eeeeeooooooeeeee	chr2:220074016-220074294(+)$1	278	122	140	13.6269
cccddddoooooodddd]	chr3:48445417-48445668(-)$1	251	56	74	11.1846
c[eeeeeooooooeeeee	chr3:51426497-51426816(+)$1	319	160	178	13.8160
"ffffffoooooofffff	chr1:25568763-25569047(-)$1	284	226	244	11.1558
!ffffffoooooofffff	chr5:65237150-65237478(+)$1	328	97	115	11.1563
f[eeeeeooooooeeeee	chr3:42689975-42690223(+)$1	248	158	176	13.7076
e[eeeeeooooooeeeee	chr17:8062568-8062846(-)$1	278	112	130	13.6798
!a[ddddoooooodddd]	chr11:70282463-70282733(+)$1	270	48	66	11.5467
%%eeeeeooooooeeeee	chr3:184104301-184104559(+)$1	258	75	93	12.6738
DDeeeeeooooooeeeee	chr14:81939181-81939495(-)$1	314	234	252	11.4361
cceeeeeooooooeeeee	chr20:39803973-39804235(+)$1	262	230	248	13.5377
e[eeeeeooooooeeeee	chr17:8062489-8062754(-)$1	265	20	38	13.6798
gggggggooooooggggg	chrY:15032050-15032337(+)$1	287	137	155	11.2894

#otherMatches

#Seq PSSM
UGUGAACUGCAGUGUUUC	chr1:110174466-110174739(+)$1	273	140	158	10.8091
CAGGUUGAUAUCACAAUC	chr2:166846138-166846412(-)$1	274	151	169	13.4380
CUACACGAUUGGACGUGU	chr19:10802462-10802730(+)$1	268	61	79	13.6565
UUGUAAACUAUAUUUUAC	chr16:2652758-2653015(+)$1	257	233	251	11.2894
UGGGCACAGAGAGGGGCC	chr3:52842587-52842843(+)$1	256	167	185	11.1057
UGUUCAGUGUCCUCUGAA	chr3:141644439-141644769(+)$1	330	257	275	13.5377
UGGCCGGAGAGGACCGGC	chr21:46932320-46932571(+)$1	251	10	28	11.9826
CCCACUGGGAGGGCGGUG	chr20:61303393-61303675(+)$1	282	156	174	11.2894
AAGAUCGAUGUCCCGAUC	chr16:31202774-31203018(+)$1	244	185	203	13.8119
GUCAAGUUUCUCUGCUUU	chr10:75531200-75531505(+)$1	305	170	188	10.9934
ACCUCAGAGUACACCGAG	chr22:46753021-46753301(+)$1	280	142	160	10.7031
AUUCAUAGAUUUAUAUGA	chr2:178094949-178095241(-)$1	292	18	36	13.0260
GUCACUGAGUUAACAGUG	chr3:132395294-132395576(+)$1	282	4	22	11.1003
UUGAGGGAUUCUACCCUG	chr3:33038276-33038535(-)$1	259	17	35	11.0025
AGAUUAUUAUUUUGUAAG	chr6:138411904-138412148(-)$1	244	145	163	11.3845
ACAAACUGUCACAAGUUG	chr4:187209735-187209993(+)$1	258	173	191	10.8507
CUAUAUUCCCUAAAGUAU	chr9:6506793-6507141(+)$1	348	213	231	10.5930
GAUCCAGUUUUGUUUGGA	chr6:17615409-17615676(-)$1	267	220	238	13.6565
GUGGGCCAGACAAGGCCU	chr11:47260381-47260658(+)$1	277	36	54	13.2943
CUGAAGAGUUGUGUCUUU	chr6:30593946-30594239(+)$1	293	9	27	12.7417
UGUCAGGGAAAUACUUGG	chr3:78963515-78963828(-)$1	313	132	150	11.9079
GUCUGUUUAAAGUGGCAA	chrX:23804118-23804382(+)$1	264	4	22	11.2385
GGUUAAUAAAAAAAUUGG	chr14:25442412-25442664(-)$1	252	158	176	13.8160
UCUUGCAUUCUCCUGUGG	chr3:184107068-184107369(+)$1	301	212	230	10.8575
UUCAUUGGAAAUACAAUG	chr16:80295989-80296252(-)$1	263	126	144	11.1563
UAAUAGCAAAAUGGCUGU	chr3:156865508-156865812(-)$1	304	274	292	13.8642
CAACCCCAGACUAGGGGU	chr10:99216700-99217040(+)$1	340	177	195	11.9079
UCAUGCAUUCUUUUGCAC	chr2:20192576-20192838(-)$1	262	18	36	11.2705
AGCCAUCCUGAAUGGUGG	chr6:33259591-33259902(-)$1	311	77	95	11.1558
GGCUUGUGUCUGGACAGG	chr2:242707671-242708005(+)$1	334	278	296	13.4830
GUGGAAAUUCUGUUUUCC	chr16:71962350-71962622(+)$1	272	80	98	13.8479
CGUCUGGGCUGCACCAGG	chr20:62374595-62374865(+)$1	270	208	226	11.2894
AUUAGCUAUUUUCAGCUA	chr13:33091761-33092022(-)$1	261	84	102	10.5845
GUAGAGCAAGCACGUUUU	chr2:27422575-27422818(-)$1	243	109	127	13.8160
CUCUCCCGCUGCUGGGAU	chr9:135973671-135973917(-)$1	246	71	89	11.2868
AAAGUUUAGGAUAAAACU	chr2:99216765-99217119(-)$1	354	301	319	11.1973
acagauaggcuuauauua	chr8:9629633-9629943(+)$1	310	218	236	11.4377
GGUGCUCAAAGAAGACAU	chr2:160624786-160625155(+)$1	369	329	347	10.8507
AGAAAACGUAUGAGUUUC	chr11:61171848-61172112(-)$1	264	235	253	12.5098
GAGUGAUGUGGAGGUCGC	chr2:220074016-220074294(+)$1	278	122	140	13.6269
GGCUGGAAGAGACUCCAG	chr3:48445417-48445668(-)$1	251	56	74	11.1846
GAUGCUGGCCCUACAGUA	chr3:51426497-51426816(+)$1	319	160	178	13.8160
GUAAAAAUGAAAUUUUUU	chr1:25568763-25569047(-)$1	284	226	244	11.1558
gguauaugggagaaugug	chr5:65237150-65237478(+)$1	328	97	115	11.1563
AUAUUAGCAAUGUCUAAU	chr3:42689975-42690223(+)$1	248	158	176	13.7076
UUGAGGGUACAGUCCCUU	chr17:8062568-8062846(-)$1	278	112	130	13.6798
UGAAGCGUGUUUUUGCUC	chr11:70282463-70282733(+)$1	270	48	66	11.5467
CUGCGCCGCCUGUGGUGC	chr3:184104301-184104559(+)$1	258	75	93	12.6738
CUGUAUGCUGUAAUAUAC	chr14:81939181-81939495(-)$1	314	234	252	11.4361
GGGUCCAGGCCCGUGGGC	chr20:39803973-39804235(+)$1	262	230	248	13.5377
UUGAGGGUACAGUCCCUU	chr17:8062489-8062754(-)$1	265	20	38	13.6798
GGUUAUUUCUGUCAGUGA	chrY:15032050-15032337(+)$1	287	137	155	11.2894

#DB
(((((((......).)))	chr1:110174466-110174739(+)$1	1	140	158	10.8091
))(((((......)))))	chr2:166846138-166846412(-)$1	1	151	169	13.4380
(.(((((......)))))	chr19:10802462-10802730(+)$1	1	61	79	13.6565
(((((((......)))))	chr16:2652758-2653015(+)$1	1	233	251	11.2894
(((((.(......).)))	chr3:52842587-52842843(+)$1	1	167	185	11.1057
))(((((......)))))	chr3:141644439-141644769(+)$1	1	257	275	13.5377
(((((((......)))))	chr21:46932320-46932571(+)$1	1	10	28	11.9826
(((((((......)))))	chr20:61303393-61303675(+)$1	1	156	174	11.2894
..(((((......)))))	chr16:31202774-31203018(+)$1	1	185	203	13.8119
((.((((......)))).	chr10:75531200-75531505(+)$1	1	170	188	10.9934
.((((.(......).)))	chr22:46753021-46753301(+)$1	1	142	160	10.7031
(((((((......)))))	chr2:178094949-178095241(-)$1	1	18	36	13.0260
.((((((......)))))	chr3:132395294-132395576(+)$1	1	4	22	11.1003
((.((((......)))).	chr3:33038276-33038535(-)$1	1	17	35	11.0025
((.((((......)))).	chr6:138411904-138412148(-)$1	1	145	163	11.3845
((((.((......)))))	chr4:187209735-187209993(+)$1	1	173	191	10.8507
.((((((......)))))	chr9:6506793-6507141(+)$1	1	213	231	10.5930
(.(((((......)))))	chr6:17615409-17615676(-)$1	1	220	238	13.6565
))(((((......)))))	chr11:47260381-47260658(+)$1	1	36	54	13.2943
(((((((......)))))	chr6:30593946-30594239(+)$1	1	9	27	12.7417
..(((((......)))))	chr3:78963515-78963828(-)$1	1	132	150	11.9079
((.((((......)))))	chrX:23804118-23804382(+)$1	1	4	22	11.2385
(.(((((......)))))	chr14:25442412-25442664(-)$1	1	158	176	13.8160
(((((((......)))))	chr3:184107068-184107369(+)$1	1	212	230	10.8575
.((((((......)))))	chr16:80295989-80296252(-)$1	1	126	144	11.1563
..(((((......)))))	chr3:156865508-156865812(-)$1	1	274	292	13.8642
..(((((......)))))	chr10:99216700-99217040(+)$1	1	177	195	11.9079
...((((......)))).	chr2:20192576-20192838(-)$1	1	18	36	11.2705
.((((((......)))))	chr6:33259591-33259902(-)$1	1	77	95	11.1558
..(((((......)))))	chr2:242707671-242708005(+)$1	1	278	296	13.4830
(.(((((......)))))	chr16:71962350-71962622(+)$1	1	80	98	13.8479
(((((((......)))))	chr20:62374595-62374865(+)$1	1	208	226	11.2894
.((((((......)))))	chr13:33091761-33092022(-)$1	1	84	102	10.5845
(.(((((......)))))	chr2:27422575-27422818(-)$1	1	109	127	13.8160
(..((((......)))).	chr9:135973671-135973917(-)$1	1	71	89	11.2868
(((((((......)))))	chr2:99216765-99217119(-)$1	1	301	319	11.1973
(..((((......)))).	chr8:9629633-9629943(+)$1	1	218	236	11.4377
((((.((......)))))	chr2:160624786-160625155(+)$1	1	329	347	10.8507
(((((.(......)))))	chr11:61171848-61172112(-)$1	1	235	253	12.5098
(.(((((......)))))	chr2:220074016-220074294(+)$1	1	122	140	13.6269
(((((((......)))).	chr3:48445417-48445668(-)$1	1	56	74	11.1846
(.(((((......)))))	chr3:51426497-51426816(+)$1	1	160	178	13.8160
.((((((......)))))	chr1:25568763-25569047(-)$1	1	226	244	11.1558
.((((((......)))))	chr5:65237150-65237478(+)$1	1	97	115	11.1563
(.(((((......)))))	chr3:42689975-42690223(+)$1	1	158	176	13.7076
(.(((((......)))))	chr17:8062568-8062846(-)$1	1	112	130	13.6798
.(.((((......)))).	chr11:70282463-70282733(+)$1	1	48	66	11.5467
..(((((......)))))	chr3:184104301-184104559(+)$1	1	75	93	12.6738
))(((((......)))))	chr14:81939181-81939495(-)$1	1	234	252	11.4361
))(((((......)))))	chr20:39803973-39804235(+)$1	1	230	248	13.5377
(.(((((......)))))	chr17:8062489-8062754(-)$1	1	20	38	13.6798
(((((((......)))))	chrY:15032050-15032337(+)$1	1	137	155	11.2894

#PSSM
c : 0.13	f : 0.11	e : 0.11	g : 0.09	b : 0.05	! : 0.05	" : 0.05	# : 0.03	[ : 0.03	% : 0.03	: : 0.03	a : 0.03	B : 0.01	h : 0.01	G : 0.01	i : 0.01	$ : 0.01	& : 0.01	= : 0.01	d : 0.01	D : 0.01	
f : 0.21	[ : 0.19	g : 0.09	c : 0.07	e : 0.07	# : 0.03	: : 0.03	! : 0.03	B : 0.01	d : 0.01	h : 0.01	b : 0.01	G : 0.01	i : 0.01	" : 0.01	$ : 0.01	= : 0.01	a : 0.01	% : 0.01	D : 0.01	
e : 0.51	f : 0.15	g : 0.09	[ : 0.09	! : 0.03	d : 0.01	i : 0.01	# : 0.01	= : 0.01	c : 0.01	
e : 0.51	d : 0.19	f : 0.15	g : 0.09	i : 0.01	= : 0.01	
e : 0.48	d : 0.19	f : 0.15	g : 0.09	[ : 0.03	i : 0.01	= : 0.01	
e : 0.46	d : 0.17	f : 0.15	g : 0.07	[ : 0.05	b : 0.03	i : 0.01	= : 0.01	
e : 0.46	d : 0.17	f : 0.13	a : 0.07	g : 0.07	b : 0.03	i : 0.01	= : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
e : 0.46	d : 0.17	f : 0.13	a : 0.07	g : 0.07	b : 0.03	i : 0.01	= : 0.01	
e : 0.48	d : 0.17	f : 0.13	g : 0.07	] : 0.05	b : 0.03	i : 0.01	= : 0.01	
e : 0.51	d : 0.19	f : 0.15	g : 0.09	i : 0.01	= : 0.01	
e : 0.51	d : 0.19	f : 0.15	g : 0.09	i : 0.01	= : 0.01	
e : 0.51	f : 0.17	g : 0.09	] : 0.09	2 : 0.03	d : 0.01	i : 0.01	4 : 0.01	= : 0.01	

#score	630.2366612763157
#seq	52
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_transcript_m3_run2.txt

#BEAR
!!cccqqqqqqqqccc2	chr2:270409-270684(+)$1	275	43	60	14.5194
==cccqqqqqqqqccc]	chr6:170850151-170850387(-)$1	236	71	88	14.3696
$ddddqqqqqqqqdddd	chr1:45588638-45588909(-)$1	271	179	196	13.5424
eeeeeqqqqqqqqeeee	chr2:242231167-242231391(-)$1	224	139	156	13.4197
e[cccqqqqqqqqccc]	chr10:114766909-114767220(+)$1	311	225	242	14.4363
%%cccqqqqqqqqccc6	chr6:24226769-24227059(-)$1	290	138	155	12.7569
fffffqqqqqqqqffff	chr10:60957081-60957329(+)$1	248	219	236	12.9943
!!cccqqqqqqqqccc2	chr1:45629939-45630207(-)$1	268	168	185	14.5194
::cccqqqqqqqqcccd	chrX:131586881-131587173(-)$1	292	31	48	12.2900
!!cccqqqqqqqqccc2	chr5:77362213-77362485(-)$1	272	59	76	14.5194
fffffqqqqqqqqffff	chr7:73110992-73111311(+)$1	319	75	92	12.9943
eeeeeqqqqqqqqeeee	chr2:165672695-165672982(-)$1	287	185	202	13.4197
[ddddqqqqqqqqdddd	chr2:225396497-225396834(-)$1	337	201	218	13.7512
i:cccqqqqqqqqccc:	chr19:54962087-54962395(+)$1	308	73	90	12.2249
gggggqqqqqqqqgggg	chr2:191088555-191088799(-)$1	244	62	79	13.5622
""cccqqqqqqqqccc3	chr6:1882012-1882252(-)$1	240	25	42	14.5578
##cccqqqqqqqqccc4	chr3:69107945-69108204(-)$1	259	230	247	14.4047
eeeeeqqqqqqqqeeee	chr15:67398698-67398917(+)$1	219	4	21	13.4197
"ddddqqqqqqqqdddd	chr20:8213052-8213297(+)$1	245	46	63	13.7295
:ddddqqqqqqqqdddd	chr10:81510427-81510683(-)$1	256	0	17	12.7681
$$cccqqqqqqqqcccf	chr20:17927500-17927733(-)$1	233	27	44	13.9167
###bbqqqqqqqqbb33	chr20:25184355-25184593(+)$1	238	145	162	12.9597
'ddddqqqqqqqqdddd	chr7:76217108-76217427(+)$1	319	169	186	13.1498
c[cccqqqqqqqqccc3	chr5:39068380-39068658(-)$1	278	11	28	14.4457
eeeeeqqqqqqqqeeee	chr7:111021579-111021834(-)$1	255	127	144	13.4197
fffffqqqqqqqqffff	chr8:17151072-17151328(+)$1	256	120	137	12.9943
eeeeeqqqqqqqqeeee	chr8:62512371-62512632(-)$1	261	15	32	13.4197
gggggqqqqqqqqgggg	chr7:92449290-92449567(-)$1	277	184	201	13.5622
[ddddqqqqqqqqdddd	chr8:97575604-97575851(+)$1	247	101	118	13.7512
b!!bbqqqqqqqqbb22	chr18:46750229-46750523(-)$1	294	215	232	12.5107
fffffqqqqqqqqffff	chr2:167070208-167070505(-)$1	297	29	46	12.9943
:ddddqqqqqqqqdddd	chr7:110987180-110987465(-)$1	285	238	255	12.7681
eeeeeqqqqqqqqeeee	chr6:119556454-119556775(-)$1	321	44	61	13.4197
g!!bbqqqqqqqqbb22	chr20:33388110-33388386(-)$1	276	112	129	12.7231
[ddddqqqqqqqqdddd	chr2:171943668-171943924(-)$1	256	199	216	13.7512
a[cccqqqqqqqqccc]	chr2:39633663-39633918(-)$1	255	118	135	14.4883
=====qqqqqqqq====	chr7:7235066-7235356(+)$1	290	263	280	13.7131
eeeeeqqqqqqqqeeee	chr18:9581974-9582287(-)$1	313	275	292	13.4197
:ddddqqqqqqqqdddd	chr13:20616309-20616545(+)$1	236	171	188	12.7681
f[cccqqqqqqqqccc]	chr9:107634084-107634336(-)$1	252	181	198	14.4074
fffffqqqqqqqqffff	chr11:86880753-86881027(+)$1	274	31	48	12.9943
[ddddqqqqqqqqdddd	chr20:34360054-34360326(+)$1	272	152	169	13.7512
:cccaqqqqqqqqa]cc	chr4:107008783-107009048(-)$1	265	48	65	12.7140
d[cccqqqqqqqqccc]	chr7:105524665-105524981(+)$1	316	197	214	14.2981
c[cccqqqqqqqqccc]	chr8:26171920-26172193(+)$1	273	32	49	14.4292
eeeeeqqqqqqqqeeee	chr4:110701306-110701552(-)$1	246	86	103	13.4197
c!!bbqqqqqqqqbb22	chr6:111751260-111751506(-)$1	246	84	101	12.6664
b[cccqqqqqqqqcccb	chr13:34422369-34422594(+)$1	225	80	97	13.7737
fffffqqqqqqqqffff	chr7:158100196-158100466(-)$1	270	218	235	12.9943
iiiiiqqqqqqqqiiii	chr2:240190442-240190712(-)$1	270	188	205	13.4818
""cccqqqqqqqqccc]	chr16:75061660-75061961(+)$1	301	222	239	14.5414
ddcccqqqqqqqqccc:	chr2:139260362-139260708(+)$1	346	128	145	13.0007
iiiiiqqqqqqqqiiii	chr3:185395162-185395433(-)$1	271	5	22	13.4818
:ddddqqqqqqqqdddd	chr13:50868235-50868534(+)$1	299	282	299	12.7681
eeeeeqqqqqqqqeeee	chr12:23986585-23986873(-)$1	288	0	17	13.4197
[ddddqqqqqqqqdddd	chr12:11270168-11270469(-)$1	301	67	84	13.7512
eeeeeqqqqqqqqeeee	chr18:18685705-18685995(-)$1	290	247	264	13.4197
g[cccqqqqqqqqcccg	chr7:92422118-92422382(-)$1	264	176	193	14.3376
gggggqqqqqqqqgggg	chrX:133057315-133057573(-)$1	258	25	42	13.5622
fffffqqqqqqqqffff	chr14:32592657-32592898(+)$1	241	164	181	12.9943
b!!bbqqqqqqqqbb22	chr2:120646534-120646840(+)$1	306	151	168	12.5107
eeeeeqqqqqqqqeeee	chr8:121802816-121803064(-)$1	248	159	176	13.4197
[ddddqqqqqqqqdddd	chrX:73185614-73185897(+)$1	283	71	88	13.7512
#ddddqqqqqqqqdddd	chr1:246328107-246328472(-)$1	365	200	217	13.7172
fff[aqqqqqqqqa]ff	chr20:45977790-45978063(-)$1	273	34	51	12.9548
fffffqqqqqqqqffff	chr2:134913513-134913773(+)$1	260	39	56	12.9943
gggggqqqqqqqqgggg	chr6:20968299-20968540(+)$1	241	53	70	13.5622
d"""aqqqqqqqqa333	chr20:32668319-32668577(+)$1	258	144	161	13.2242
eddddqqqqqqqqdddd	chr20:8206061-8206329(+)$1	268	11	28	13.5487

#otherMatches

#Seq PSSM
CCUGAUCAUCCUUUUAA	chr2:270409-270684(+)$1	275	43	60	14.5194
GUUGUCAGACCUCACAU	chr6:170850151-170850387(-)$1	236	71	88	14.3696
caggccccuccaugcuu	chr1:45588638-45588909(-)$1	271	179	196	13.5424
uuagagcacaugaucua	chr2:242231167-242231391(-)$1	224	139	156	13.4197
GCUCACUCUCUUUUGGC	chr10:114766909-114767220(+)$1	311	225	242	14.4363
cuagaucauauucucuc	chr6:24226769-24227059(-)$1	290	138	155	12.7569
UCACUAAGUUCAAAGUG	chr10:60957081-60957329(+)$1	248	219	236	12.9943
auguuuuugcaguggcu	chr1:45629939-45630207(-)$1	268	168	185	14.5194
ccagcccauguaugcuc	chrX:131586881-131587173(-)$1	292	31	48	12.2900
gccugucuuauuucagc	chr5:77362213-77362485(-)$1	272	59	76	14.5194
AGGCUCUCUUUUUGGCC	chr7:73110992-73111311(+)$1	319	75	92	12.9943
gggaguuucacaccucc	chr2:165672695-165672982(-)$1	287	185	202	13.4197
uugcuagucuuacagug	chr2:225396497-225396834(-)$1	337	201	218	13.7512
ACAGCCUCUCUUUGCUC	chr19:54962087-54962395(+)$1	308	73	90	12.2249
cccuuggccaggaaagg	chr2:191088555-191088799(-)$1	244	62	79	13.5622
UUGGUGACAUAGGACCU	chr6:1882012-1882252(-)$1	240	25	42	14.5578
CUAUCUAUUCUAUGAUU	chr3:69107945-69108204(-)$1	259	230	247	14.4047
guuccuucuuccuggaa	chr15:67398698-67398917(+)$1	219	4	21	13.4197
ACUAGUAAGUUCCCUGG	chr20:8213052-8213297(+)$1	245	46	63	13.7295
uucaaagaacuucuuga	chr10:81510427-81510683(-)$1	256	0	17	12.7681
ucuccuuuacucuggaa	chr20:17927500-17927733(-)$1	233	27	44	13.9167
uuugaagacuaacucug	chr20:25184355-25184593(+)$1	238	145	162	12.9597
cccuucuucuuauaagg	chr7:76217108-76217427(+)$1	319	169	186	13.1498
UAGGCUAAUUUUUGCUC	chr5:39068380-39068658(-)$1	278	11	28	14.4457
UGAGACUGUCCUCUCUC	chr7:111021579-111021834(-)$1	255	127	144	13.4197
guuaguugucuuucuaa	chr8:17151072-17151328(+)$1	256	120	137	12.9943
gucuguuauuuuuuaga	chr8:62512371-62512632(-)$1	261	15	32	13.4197
gguggguuucccgccac	chr7:92449290-92449567(-)$1	277	184	201	13.5622
UGUCUUUGUUCUCAGAC	chr8:97575604-97575851(+)$1	247	101	118	13.7512
gauacuucccauuguuc	chr18:46750229-46750523(-)$1	294	215	232	12.5107
uuugguuuucuucccaa	chr2:167070208-167070505(-)$1	297	29	46	12.9943
CAGAACAAAAUUCUUCU	chr7:110987180-110987465(-)$1	285	238	255	12.7681
agagacagcuucuucuc	chr6:119556454-119556775(-)$1	321	44	61	13.4197
aucauugggucuuguuu	chr20:33388110-33388386(-)$1	276	112	129	12.7231
uuacuucaugauuagua	chr2:171943668-171943924(-)$1	256	199	216	13.7512
cuugauuucuacuucau	chr2:39633663-39633918(-)$1	255	118	135	14.4883
auaguuuaagugcauug	chr7:7235066-7235356(+)$1	290	263	280	13.7131
gaacaacaaauucuguu	chr18:9581974-9582287(-)$1	313	275	292	13.4197
cuauuuugcuauuaaua	chr13:20616309-20616545(+)$1	236	171	188	12.7681
CCCUUUUUUCAGUGAGA	chr9:107634084-107634336(-)$1	252	181	198	14.4074
ucauuucaaccuuggug	chr11:86880753-86881027(+)$1	274	31	48	12.9943
UGCCCAAUCCCCGGGGC	chr20:34360054-34360326(+)$1	272	152	169	13.7512
acugcucguuuuuguca	chr4:107008783-107009048(-)$1	265	48	65	12.7140
aauuacucuucuuuaaa	chr7:105524665-105524981(+)$1	316	197	214	14.2981
gcuccuuguucuuggau	chr8:26171920-26172193(+)$1	273	32	49	14.4292
uuuauuuuuucuuguaa	chr4:110701306-110701552(-)$1	246	86	103	13.4197
UCUACUUCUUCUUGUUU	chr6:111751260-111751506(-)$1	246	84	101	12.6664
AUCAGCUUAAUAUCUGU	chr13:34422369-34422594(+)$1	225	80	97	13.7737
uuccaucuaguuuuggg	chr7:158100196-158100466(-)$1	270	218	235	12.9943
GGCUUCUGCACAAAAGC	chr2:240190442-240190712(-)$1	270	188	205	13.4818
accguauccacccacgu	chr16:75061660-75061961(+)$1	301	222	239	14.5414
UUGUCUCUUUCCUGACU	chr2:139260362-139260708(+)$1	346	128	145	13.0007
agcauguagaucugugu	chr3:185395162-185395433(-)$1	271	5	22	13.4818
uggugguuugcugcacc	chr13:50868235-50868534(+)$1	299	282	299	12.7681
GUCAACCUACUAAUUGA	chr12:23986585-23986873(-)$1	288	0	17	13.4197
cuuggcaucuuuuucaa	chr12:11270168-11270469(-)$1	301	67	84	13.7512
uguuucaaaccuuaaau	chr18:18685705-18685995(-)$1	290	247	264	13.4197
AAGAUUCCGUCUcaucu	chr7:92422118-92422382(-)$1	264	176	193	14.3376
GGAAAGGCAAUAAUUUC	chrX:133057315-133057573(-)$1	258	25	42	13.5622
ugaauuuuacauuauuu	chr14:32592657-32592898(+)$1	241	164	181	12.9943
uuguaguuguucguaau	chr2:120646534-120646840(+)$1	306	151	168	12.5107
aaguauuuuauuuuauu	chr8:121802816-121803064(-)$1	248	159	176	13.4197
uaggcucuuauuugucu	chrX:73185614-73185897(+)$1	283	71	88	13.7512
CUUACUGAUUCCUGUAG	chr1:246328107-246328472(-)$1	365	200	217	13.7172
AUGUGUUAAUAUUCUCA	chr20:45977790-45978063(-)$1	273	34	51	12.9548
guugccacaguuuguaa	chr2:134913513-134913773(+)$1	260	39	56	12.9943
gauguguugauuaaugu	chr6:20968299-20968540(+)$1	241	53	70	13.5622
cccuguaccaucuccca	chr20:32668319-32668577(+)$1	258	144	161	13.2242
GAAGAAACAAACAUCUU	chr20:8206061-8206329(+)$1	268	11	28	13.5487

#DB
..(((........))).	chr2:270409-270684(+)$1	1	43	60	14.5194
(((((........))).	chr6:170850151-170850387(-)$1	1	71	88	14.3696
.((((........))))	chr1:45588638-45588909(-)$1	1	179	196	13.5424
(((((........))))	chr2:242231167-242231391(-)$1	1	139	156	13.4197
(.(((........))).	chr10:114766909-114767220(+)$1	1	225	242	14.4363
..(((........))).	chr6:24226769-24227059(-)$1	1	138	155	12.7569
(((((........))))	chr10:60957081-60957329(+)$1	1	219	236	12.9943
..(((........))).	chr1:45629939-45630207(-)$1	1	168	185	14.5194
..(((........)))(	chrX:131586881-131587173(-)$1	1	31	48	12.2900
..(((........))).	chr5:77362213-77362485(-)$1	1	59	76	14.5194
(((((........))))	chr7:73110992-73111311(+)$1	1	75	92	12.9943
(((((........))))	chr2:165672695-165672982(-)$1	1	185	202	13.4197
.((((........))))	chr2:225396497-225396834(-)$1	1	201	218	13.7512
).(((........))).	chr19:54962087-54962395(+)$1	1	73	90	12.2249
(((((........))))	chr2:191088555-191088799(-)$1	1	62	79	13.5622
..(((........))).	chr6:1882012-1882252(-)$1	1	25	42	14.5578
..(((........))).	chr3:69107945-69108204(-)$1	1	230	247	14.4047
(((((........))))	chr15:67398698-67398917(+)$1	1	4	21	13.4197
.((((........))))	chr20:8213052-8213297(+)$1	1	46	63	13.7295
.((((........))))	chr10:81510427-81510683(-)$1	1	0	17	12.7681
..(((........))))	chr20:17927500-17927733(-)$1	1	27	44	13.9167
...((........))..	chr20:25184355-25184593(+)$1	1	145	162	12.9597
.((((........))))	chr7:76217108-76217427(+)$1	1	169	186	13.1498
(.(((........))).	chr5:39068380-39068658(-)$1	1	11	28	14.4457
(((((........))))	chr7:111021579-111021834(-)$1	1	127	144	13.4197
(((((........))))	chr8:17151072-17151328(+)$1	1	120	137	12.9943
(((((........))))	chr8:62512371-62512632(-)$1	1	15	32	13.4197
(((((........))))	chr7:92449290-92449567(-)$1	1	184	201	13.5622
.((((........))))	chr8:97575604-97575851(+)$1	1	101	118	13.7512
(..((........))..	chr18:46750229-46750523(-)$1	1	215	232	12.5107
(((((........))))	chr2:167070208-167070505(-)$1	1	29	46	12.9943
.((((........))))	chr7:110987180-110987465(-)$1	1	238	255	12.7681
(((((........))))	chr6:119556454-119556775(-)$1	1	44	61	13.4197
(..((........))..	chr20:33388110-33388386(-)$1	1	112	129	12.7231
.((((........))))	chr2:171943668-171943924(-)$1	1	199	216	13.7512
(.(((........))).	chr2:39633663-39633918(-)$1	1	118	135	14.4883
(((((........))))	chr7:7235066-7235356(+)$1	1	263	280	13.7131
(((((........))))	chr18:9581974-9582287(-)$1	1	275	292	13.4197
.((((........))))	chr13:20616309-20616545(+)$1	1	171	188	12.7681
(.(((........))).	chr9:107634084-107634336(-)$1	1	181	198	14.4074
(((((........))))	chr11:86880753-86881027(+)$1	1	31	48	12.9943
.((((........))))	chr20:34360054-34360326(+)$1	1	152	169	13.7512
.((((........).))	chr4:107008783-107009048(-)$1	1	48	65	12.7140
(.(((........))).	chr7:105524665-105524981(+)$1	1	197	214	14.2981
(.(((........))).	chr8:26171920-26172193(+)$1	1	32	49	14.4292
(((((........))))	chr4:110701306-110701552(-)$1	1	86	103	13.4197
(..((........))..	chr6:111751260-111751506(-)$1	1	84	101	12.6664
(.(((........))))	chr13:34422369-34422594(+)$1	1	80	97	13.7737
(((((........))))	chr7:158100196-158100466(-)$1	1	218	235	12.9943
(((((........))))	chr2:240190442-240190712(-)$1	1	188	205	13.4818
..(((........))).	chr16:75061660-75061961(+)$1	1	222	239	14.5414
))(((........))).	chr2:139260362-139260708(+)$1	1	128	145	13.0007
(((((........))))	chr3:185395162-185395433(-)$1	1	5	22	13.4818
.((((........))))	chr13:50868235-50868534(+)$1	1	282	299	12.7681
(((((........))))	chr12:23986585-23986873(-)$1	1	0	17	13.4197
.((((........))))	chr12:11270168-11270469(-)$1	1	67	84	13.7512
(((((........))))	chr18:18685705-18685995(-)$1	1	247	264	13.4197
(.(((........))))	chr7:92422118-92422382(-)$1	1	176	193	14.3376
(((((........))))	chrX:133057315-133057573(-)$1	1	25	42	13.5622
(((((........))))	chr14:32592657-32592898(+)$1	1	164	181	12.9943
(..((........))..	chr2:120646534-120646840(+)$1	1	151	168	12.5107
(((((........))))	chr8:121802816-121803064(-)$1	1	159	176	13.4197
.((((........))))	chrX:73185614-73185897(+)$1	1	71	88	13.7512
.((((........))))	chr1:246328107-246328472(-)$1	1	200	217	13.7172
(((.(........).))	chr20:45977790-45978063(-)$1	1	34	51	12.9548
(((((........))))	chr2:134913513-134913773(+)$1	1	39	56	12.9943
(((((........))))	chr6:20968299-20968540(+)$1	1	53	70	13.5622
(...(........)...	chr20:32668319-32668577(+)$1	1	144	161	13.2242
(((((........))))	chr20:8206061-8206329(+)$1	1	11	28	13.5487

#PSSM
e : 0.18	f : 0.14	: : 0.08	[ : 0.08	g : 0.08	! : 0.04	i : 0.04	" : 0.04	# : 0.04	c : 0.04	b : 0.04	d : 0.04	= : 0.02	$ : 0.02	% : 0.01	' : 0.01	a : 0.01	
d : 0.23	e : 0.15	f : 0.13	[ : 0.11	! : 0.10	g : 0.05	" : 0.04	= : 0.02	: : 0.02	# : 0.02	i : 0.02	% : 0.01	$ : 0.01	c : 0.01	
c : 0.30	d : 0.21	e : 0.15	f : 0.13	g : 0.05	! : 0.05	i : 0.02	# : 0.01	= : 0.01	" : 0.01	
c : 0.30	d : 0.21	e : 0.15	f : 0.11	b : 0.07	g : 0.05	i : 0.02	= : 0.01	[ : 0.01	" : 0.01	
c : 0.28	d : 0.21	e : 0.15	f : 0.11	b : 0.07	g : 0.05	a : 0.04	i : 0.02	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.28	d : 0.21	e : 0.15	f : 0.11	b : 0.07	g : 0.05	a : 0.04	i : 0.02	= : 0.01	
c : 0.28	d : 0.21	e : 0.15	f : 0.11	b : 0.07	g : 0.05	] : 0.02	i : 0.02	= : 0.01	3 : 0.01	
c : 0.30	d : 0.21	e : 0.15	f : 0.13	g : 0.05	2 : 0.05	3 : 0.02	i : 0.02	= : 0.01	
d : 0.23	e : 0.15	f : 0.14	2 : 0.10	] : 0.10	g : 0.07	3 : 0.05	: : 0.02	i : 0.02	6 : 0.01	4 : 0.01	= : 0.01	c : 0.01	b : 0.01	

#score	930.2676883250539
#seq	69
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_UTR_m3_run1.txt

#BEAR
dddd[ggggggguuuuuuuuuuuuggggggg]ddd	chr2:48010542-48010861(+)$1	319	220	255	25.0938
eee[gggggggwwwwwwwwwwwwwwggggggg333	chr9:117069931-117070148(+)$1	217	150	185	26.0505
ddddddd!!ccctttttttttttccc4444dddd]	chr1:44170862-44171138(+)$1	276	112	147	23.3333
##bb####bbyyyyyyyyyyyyyyyybb333bb33	chr16:69165867-69166184(-)$1	317	77	112	22.6099
!bb####eeeeewwwwwwwwwwwwwweeeee333b	chr7:139257472-139257747(-)$1	275	55	90	24.9194
eeeee[ffffffyyyyyyyyyyyyyyyyffffff]	chr5:137688338-137688616(+)$1	278	8	43	22.3240
ff"""bb[ddddvvvvvvvvvvvvvddddbb]fff	chr1:155035062-155035318(+)$1	256	109	144	25.5500
fffdddd!!bbavvvvvvvvvvvvva]bbdddd]f	chr6:32943766-32944033(+)$1	267	100	135	24.7660
%%%%gggggggwwwwwwwwwwwwwwggggggg666	chr12:57504815-57505171(-)$1	356	73	108	22.2359
ggggggg[ddddvvvvvvvvvvvvvddddgggggg	chr19:5206347-5206644(-)$1	297	100	135	26.3496
a[bb[iiiiiiiiitttttttttttiiiiiiiii]	chr16:30134166-30134431(-)$1	265	167	202	24.4915
cc[ccc####bbvvvvvvvvvvvvvbb4444ccc]	chr17:7082325-7082533(-)$1	208	21	56	26.9215
eeeee[fffffftttttttttttffffff]eeeee	chr19:36504884-36505156(-)$1	272	155	190	22.7545
g[===========ttttttttttt===========	chr10:104209678-104210031(+)$1	353	53	88	26.2357
####hhhhhhhhwwwwwwwwwwwwwwhhhhhhhh5	chr11:65374361-65374622(-)$1	261	30	65	22.1761
=============ttttttttttt===========	chr1:150547213-150547495(-)$1	282	165	200	26.1797
cc$$$$$eeeeettttttttttteeeee333ccc]	chr3:49723585-49723801(-)$1	216	25	60	23.5703
========[cccvvvvvvvvvvvvvccc]======	chr2:97525469-97525727(-)$1	258	102	137	28.4777
cc[ccc####bbvvvvvvvvvvvvvbb4444ccc]	chr17:7082310-7082522(-)$1	212	10	45	26.9215
d####bb[cccwwwwwwwwwwwwwwccc]bb333d	chr14:24776730-24777068(+)$1	338	179	214	25.9066
fff!!ccc[ddddtttttttttttdddd]ccc444	chr3:9957717-9958017(+)$1	300	65	100	24.6349
Bccc!!ffffffuuuuuuuuuuuuffffff22ccc	chr20:43029809-43030075(+)$1	266	22	57	24.5259
[ccc!!ffffffvvvvvvvvvvvvvffffff22cc	chr1:249151691-249151914(-)$1	223	112	147	26.7077
hhhhhhhhbbbbvvvvvvvvvvvvvbb]bbiiiii	chr2:65496147-65496443(+)$1	296	179	214	24.1710
fff[a[eeeee[attttttttttta]eeeee]a22	chr10:101379910-101380229(-)$1	319	204	239	24.6740
ee"""bb[eeeeeuuuuuuuuuuuueeeeebb]ee	chr1:249151572-249151853(-)$1	281	88	123	24.5585
="""ffffff!!attttttttttta]ffffff]==	chr14:23791156-23791372(+)$1	216	9	44	25.5025
ccc!!ddddccc[attttttttttta]ccc]dddd	chr17:56160734-56160980(+)$1	246	117	152	24.2243
dddeeeeecccwwwwwwwwwwwwwwccc]eeeee]	chr11:61094150-61094407(-)$1	257	42	77	24.5423
ggg!!ccc[cccxxxxxxxxxxxxxxxccc]ccc2	chr14:24584802-24585075(+)$1	273	209	244	20.3005
eebbccc[ddddvvvvvvvvvvvvvdddd]ccc]b	chr3:167452150-167452463(-)$1	313	232	267	25.6227
e[a!!bb[fffffftttttttttttffffff]bb2	chr6:76311776-76312117(+)$1	341	152	187	23.9213
cc[a"""dddd[bbtttttttttttbb]dddd]ac	chr17:79953272-79953527(+)$1	255	116	151	23.1436
iiiiiiii!!cccuuuuuuuuuuuuccc]iiiiii	chr16:30959864-30960141(+)$1	277	139	174	26.9379
eeee"""fffffftttttttttttffffff]eeee	chr2:135206722-135207071(+)$1	349	1	36	23.9546
g[bbffffffcccuuuuuuuuuuuuccc]ffffff	chr6:37142085-37142303(+)$1	218	166	201	24.9879
hhhhh[ffffffvvvvvvvvvvvvvffffff]hhh	chr9:127020392-127020713(+)$1	321	8	43	25.2653
fbb[a[cccyyyyyyyyyyyyyyyyccc]a]bb44	chr7:99697898-99698233(-)$1	335	250	285	22.9110
ccc[ccc[ddddvvvvvvvvvvvvvdddd]ccc]c	chr1:155242921-155243211(-)$1	290	236	271	26.5704
dddd!!bb[a[avvvvvvvvvvvvva]a]bb22dd	chr8:30669845-30670059(-)$1	214	49	84	25.8965
g!!ggggggg[axxxxxxxxxxxxxxxa]gggggg	chr2:242255519-242255875(+)$1	356	20	55	20.3978
::==========uuuuuuuuuuuu==========:	chr4:78078290-78078552(+)$1	262	1	36	24.3904
eeee!!ccc[bbwwwwwwwwwwwwwwbb]ccc22e	chr20:62589023-62589283(-)$1	260	25	60	24.8466
ndddd::eeeeevvvvvvvvvvvvveeeeebb[ff	chr10:28822877-28823141(+)$1	264	152	187	21.9577
$$$$dddd[cccvvvvvvvvvvvvvccc]ddddcc	chr14:23771821-23772082(-)$1	261	80	115	25.6571
::::ccc[bb[avvvvvvvvvvvvva]bb22ccc:	chr1:113217146-113217404(+)$1	258	147	182	21.6106
[a[ffffff[bbtttttttttttbb]ffffff]a]	chr16:2317721-2318021(-)$1	300	88	123	23.3295
ffff:gggggggwwwwwwwwwwwwwwggggggg::	chr6:117996576-117996870(+)$1	294	67	102	22.5046
bb[iiiiiiiiiuuuuuuuuuuuuiiiiiiiii]b	chr3:47459574-47459822(-)$1	248	45	80	25.7462
dd!!ccc[ddddvvvvvvvvvvvvvdddd333ccc	chr19:39439149-39439423(-)$1	274	138	173	26.7980
dddd::a[dddduuuuuuuuuuuudddd]addddb	chr22:41487956-41488193(+)$1	237	77	112	22.1187
cc[ccc####bbvvvvvvvvvvvvvbb4444ccc]	chr17:7082333-7082545(-)$1	212	33	68	26.9215
hhhh[bb[fffffftttttttttttffffff]bb]	chr9:137023874-137024186(+)$1	312	24	59	23.0615
b!!eeeee[a[bbtttttttttttbb]a]eeeee2	chr19:16187681-16187990(+)$1	309	106	141	23.7103
ccceeeeefffffftttttttttttffffff333e	chr17:79864181-79864467(-)$1	286	84	119	23.5686

#otherMatches

#Seq PSSM
CAGAGUUGGCUUGAAUGAGUGCAGGGGUCGAGUCU	chr2:48010542-48010861(+)$1	319	220	255	25.0938
CCACCAGGCUGUCUGCCUCUAUCCCCAGCCUGCCC	chr9:117069931-117070148(+)$1	217	150	185	26.0505
AGGGCAAUACUGAAGGGGUUAAACAGGUUUUUGCU	chr1:44170862-44171138(+)$1	276	112	147	23.3333
gacggaaggcggagggaaggaagggagcgagcggg	chr16:69165867-69166184(-)$1	317	77	112	22.6099
ACCAGUACCCUUACAUAUAAACACUGGAGgggagg	chr7:139257472-139257747(-)$1	275	55	90	24.9194
GUGGUGGCUGUUGGGGGGGGUGGGGGGGAACGGCG	chr5:137688338-137688616(+)$1	278	8	43	22.3240
UGGGGGUUGGACGGGAUUGAGGAAGGUCCGCACAG	chr1:155035062-155035318(+)$1	256	109	144	25.5500
UGCAUCAAUGCCACAAGAAGAACAAGAGCUGGUAG	chr6:32943766-32944033(+)$1	267	100	135	24.7660
guguguguguguguguguguguguguauguaugug	chr12:57504815-57505171(-)$1	356	73	108	22.2359
CCUUCCAAUUCCAAAACCAGAUUCCGGGGUGGGGG	chr19:5206347-5206644(-)$1	297	100	135	26.3496
CGGAGCGUCCCGAGGAGGCAGGAGACUCGGGAUGA	chr16:30134166-30134431(-)$1	265	167	202	24.4915
GCAAGUAAAAUGGGAAGAGAGGUGGCGGGAGGCUG	chr17:7082325-7082533(-)$1	208	21	56	26.9215
UAGGAGUCCGAGGAGGCUCAGAGCUUGGAGUCCUA	chr19:36504884-36505156(-)$1	272	155	190	22.7545
UACUAAGCUGGGGAUCACCGUCGCCCUCGGCUUGG	chr10:104209678-104210031(+)$1	353	53	88	26.2357
UUUUUUUCUGUCUGUGGGCGGGUUCUGGCGGAAGU	chr11:65374361-65374622(-)$1	261	30	65	22.1761
GGGCAAAUCCUCCAAAAGGGAAAGGGAGGAUUUGC	chr1:150547213-150547495(-)$1	282	165	200	26.1797
ACCGAUUUACGCCAGAAAAAUACGCGUGCAAGUGA	chr3:49723585-49723801(-)$1	216	25	60	23.5703
AGAGGGUGGGCCUGCUGUGGACAAUGGCAUACUCU	chr2:97525469-97525727(-)$1	258	102	137	28.4777
GCAAGUAAAAUGGGAAGAGAGGUGGCGGGAGGCUG	chr17:7082310-7082522(-)$1	212	10	45	26.9215
GUGGGGAGCAGGAGAGGAAGGGGUACUGGUUAGUC	chr14:24776730-24777068(+)$1	338	179	214	25.9066
UUCAGUCCAGGCUGGAGAGGUUGGGGCCGGGGUAG	chr3:9957717-9958017(+)$1	300	65	100	24.6349
CGGCAGAGCCUCCACCCCUUCACAGAGGCUAGGCC	chr20:43029809-43030075(+)$1	266	22	57	24.5259
GAGGUUGCCCUGGGGUUUGAGGGAACAGGGCUCCC	chr1:249151691-249151914(-)$1	223	112	147	26.7077
GUAAUGUGGCGCUUUCAACUGUACUGCUGCAGCUU	chr2:65496147-65496443(+)$1	296	179	214	24.1710
ccggggAGUCGGCGCUGCUGGACGGGUGGCUGCAg	chr10:101379910-101380229(-)$1	319	204	239	24.6740
GGUAUGGCUCUCCAGGGUAAGAGGAGGAGACUUCC	chr1:249151572-249151853(-)$1	281	88	123	24.5585
GGGAUGGGUCAGCGAUCACUACAAGGGGCCCGACU	chr14:23791156-23791372(+)$1	216	9	44	25.5025
CGCGGGCGGCCGGCGAAACUCCAAGGGCGGACCGC	chr17:56160734-56160980(+)$1	246	117	152	24.2243
GACCCUCAGGGGCGGCACGUAAAAACCUAUGAGGU	chr11:61094150-61094407(-)$1	257	42	77	24.5423
CCAACUCCAGGCAGGAAAAUUACAGAGGUUAGGAA	chr14:24584802-24585075(+)$1	273	209	244	20.3005
UCCCCCUGCUUUGUAAGUAAGAGAAAAGGGAGGAG	chr3:167452150-167452463(-)$1	313	232	267	25.6227
GGGAGUCGUGGGCCGAGAGGAACCGGGCCCGGGAA	chr6:76311776-76312117(+)$1	341	152	187	23.9213
CUCGCUAGAGGCAGCUUCUCCACCCCUUCCUCACA	chr17:79953272-79953527(+)$1	255	116	151	23.1436
AGCCCGGCGAGGGGCAAGCGGGGGACCCAGCCGGG	chr16:30959864-30960141(+)$1	277	139	174	26.9379
UCAAGAGUCCUUUAAAACAAAACAGGAGGAAUUGA	chr2:135206722-135207071(+)$1	349	1	36	23.9546
AUGGGAUAGGACUAGCACCAUUUUAAGUCCCUGUC	chr6:37142085-37142303(+)$1	218	166	201	24.9879
cccgcggcccggagaagggcgggggccgggcggcg	chr9:127020392-127020713(+)$1	321	8	43	25.2653
AGGGCGCUAGAAUUUUAAACUAAAGUAGGGACCGG	chr7:99697898-99698233(-)$1	335	250	285	22.9110
GCUGGCCGCGCGAAAAGAUGGCGACCGCGGGGCGG	chr1:155242921-155243211(-)$1	290	236	271	26.5704
ccgggggcggguggggaggggggagggcggcggcc	chr8:30669845-30670059(-)$1	214	49	84	25.8965
GCCGAGCCCAGGCUCUUCGGCACUUAUCGUGGGCU	chr2:242255519-242255875(+)$1	356	20	55	20.3978
AGUCCGUGGAGGAAGUGCAGGAUCCCUCCGCGGGG	chr4:78078290-78078552(+)$1	262	1	36	24.3904
GCUGGAGGAGCCGGAGGUGGAGGGUGGGGUCUGGC	chr20:62589023-62589283(-)$1	260	25	60	24.8466
GAGCGCAGGCCUCAGAAGUCGAUACAGGCCCUUCG	chr10:28822877-28823141(+)$1	264	152	187	21.9577
AAGCUGACGGCCAGAGGGAGGGAAGGGUGGUCACA	chr14:23771821-23772082(-)$1	261	80	115	25.6571
AAGAGUUAAUGCGAAGAGGGGGAGGGGAUAGGACG	chr1:113217146-113217404(+)$1	258	147	182	21.6106
GUGCGGGCUCCGAGAAGAAAGAGUGUGGCCCGGGG	chr16:2317721-2318021(-)$1	300	88	123	23.3295
GCGGGGCUGCCAAGGGAGGAGGAAGAUGGCGGCGG	chr6:117996576-117996870(+)$1	294	67	102	22.5046
GCCGGAGCCUGGCCCAUACCAACACCGGGCUUCUG	chr3:47459574-47459822(-)$1	248	45	80	25.7462
GGAACGGCUGGGCCAUAGAAAAGAACCUAACACCG	chr19:39439149-39439423(-)$1	274	138	173	26.7980
CGCCUAGGGGGGACCAUUACAUAACCCCGCGCCCC	chr22:41487956-41488193(+)$1	237	77	112	22.1187
GCAAGUAAAAUGGGAAGAGAGGUGGCGGGAGGCUG	chr17:7082333-7082545(-)$1	212	33	68	26.9215
UGGACAGGAGGUGCUGAGGCUGGCUGCACCUGCUC	chr9:137023874-137024186(+)$1	312	24	59	23.0615
CGAUCUCCGGGUGGAGAAGUGGAGCGGCGGGAGGG	chr19:16187681-16187990(+)$1	309	106	141	23.7103
UGGCAGAGAGGCCCUACAUCAUCGCGGGCUUACAC	chr17:79864181-79864467(-)$1	286	84	119	23.5686

#DB
((((.(((((((............))))))).)))	chr2:48010542-48010861(+)$1	1	220	255	25.0938
(((.(((((((..............)))))))...	chr9:117069931-117070148(+)$1	1	150	185	26.0505
(((((((..(((...........)))....)))).	chr1:44170862-44171138(+)$1	1	112	147	23.3333
..((....((................))...))..	chr16:69165867-69166184(-)$1	1	77	112	22.6099
.((....(((((..............)))))...)	chr7:139257472-139257747(-)$1	1	55	90	24.9194
(((((.((((((................)))))).	chr5:137688338-137688616(+)$1	1	8	43	22.3240
((...((.((((.............)))))).)))	chr1:155035062-155035318(+)$1	1	109	144	25.5500
(((((((..(((.............).)))))).)	chr6:32943766-32944033(+)$1	1	100	135	24.7660
....(((((((..............)))))))...	chr12:57504815-57505171(-)$1	1	73	108	22.2359
(((((((.((((.............))))))))))	chr19:5206347-5206644(-)$1	1	100	135	26.3496
(.((.(((((((((...........))))))))).	chr16:30134166-30134431(-)$1	1	167	202	24.4915
((.(((....((.............))....))).	chr17:7082325-7082533(-)$1	1	21	56	26.9215
(((((.((((((...........)))))).)))))	chr19:36504884-36505156(-)$1	1	155	190	22.7545
(.(((((((((((...........)))))))))))	chr10:104209678-104210031(+)$1	1	53	88	26.2357
....((((((((..............)))))))).	chr11:65374361-65374622(-)$1	1	30	65	22.1761
(((((((((((((...........)))))))))))	chr1:150547213-150547495(-)$1	1	165	200	26.1797
((.....(((((...........)))))...))).	chr3:49723585-49723801(-)$1	1	25	60	23.5703
((((((((.(((.............))).))))))	chr2:97525469-97525727(-)$1	1	102	137	28.4777
((.(((....((.............))....))).	chr17:7082310-7082522(-)$1	1	10	45	26.9215
(....((.(((..............))).))...)	chr14:24776730-24777068(+)$1	1	179	214	25.9066
(((..(((.((((...........)))).)))...	chr3:9957717-9958017(+)$1	1	65	100	24.6349
((((..((((((............))))))..)))	chr20:43029809-43030075(+)$1	1	22	57	24.5259
.(((..((((((.............))))))..))	chr1:249151691-249151914(-)$1	1	112	147	26.7077
))))))))((((.............)).))(((((	chr2:65496147-65496443(+)$1	1	179	214	24.1710
(((.(.(((((.(...........).))))).)..	chr10:101379910-101380229(-)$1	1	204	239	24.6740
((...((.(((((............))))))).))	chr1:249151572-249151853(-)$1	1	88	123	24.5585
(...((((((..(...........).)))))).))	chr14:23791156-23791372(+)$1	1	9	44	25.5025
(((..(((((((.(...........).))).))))	chr17:56160734-56160980(+)$1	1	117	152	24.2243
(((((((((((..............))).))))).	chr11:61094150-61094407(-)$1	1	42	77	24.5423
(((..(((.(((...............))).))).	chr14:24584802-24585075(+)$1	1	209	244	20.3005
(((((((.((((.............)))).))).)	chr3:167452150-167452463(-)$1	1	232	267	25.6227
(.(..((.((((((...........)))))).)).	chr6:76311776-76312117(+)$1	1	152	187	23.9213
((.(...((((.((...........)).)))).))	chr17:79953272-79953527(+)$1	1	116	151	23.1436
((((((((..(((............))).))))))	chr16:30959864-30960141(+)$1	1	139	174	26.9379
((((...((((((...........)))))).))))	chr2:135206722-135207071(+)$1	1	1	36	23.9546
(.(((((((((((............))).))))))	chr6:37142085-37142303(+)$1	1	166	201	24.9879
(((((.((((((.............)))))).)))	chr9:127020392-127020713(+)$1	1	8	43	25.2653
(((.(.(((................))).).))..	chr7:99697898-99698233(-)$1	1	250	285	22.9110
(((.(((.((((.............)))).))).)	chr1:155242921-155243211(-)$1	1	236	271	26.5704
((((..((.(.(.............).).))..))	chr8:30669845-30670059(-)$1	1	49	84	25.8965
(..(((((((.(...............).))))))	chr2:242255519-242255875(+)$1	1	20	55	20.3978
..((((((((((............)))))))))).	chr4:78078290-78078552(+)$1	1	1	36	24.3904
((((..(((.((..............)).)))..)	chr20:62589023-62589283(-)$1	1	25	60	24.8466
.))))..(((((.............)))))((.((	chr10:28822877-28823141(+)$1	1	152	187	21.9577
....((((.(((.............))).))))))	chr14:23771821-23772082(-)$1	1	80	115	25.6571
....(((.((.(.............).))..))).	chr1:113217146-113217404(+)$1	1	147	182	21.6106
.(.((((((.((...........)).)))))).).	chr16:2317721-2318021(-)$1	1	88	123	23.3295
)))).(((((((..............)))))))..	chr6:117996576-117996870(+)$1	1	67	102	22.5046
((.(((((((((............))))))))).)	chr3:47459574-47459822(-)$1	1	45	80	25.7462
((..(((.((((.............))))...)))	chr19:39439149-39439423(-)$1	1	138	173	26.7980
))))..(.((((............)))).)(((((	chr22:41487956-41488193(+)$1	1	77	112	22.1187
((.(((....((.............))....))).	chr17:7082333-7082545(-)$1	1	33	68	26.9215
((((.((.((((((...........)))))).)).	chr9:137023874-137024186(+)$1	1	24	59	23.0615
(..(((((.(.((...........)).).))))).	chr19:16187681-16187990(+)$1	1	106	141	23.7103
((((((((((((((...........))))))...)	chr17:79864181-79864467(-)$1	1	84	119	23.5686

#PSSM
e : 0.14	c : 0.14	d : 0.12	f : 0.10	g : 0.09	= : 0.05	h : 0.05	# : 0.03	[ : 0.03	: : 0.03	b : 0.03	! : 0.01	% : 0.01	a : 0.01	B : 0.01	i : 0.01	n : 0.01	$ : 0.01	
c : 0.18	d : 0.12	e : 0.12	f : 0.09	[ : 0.07	# : 0.05	b : 0.05	h : 0.05	g : 0.03	= : 0.03	! : 0.03	: : 0.03	% : 0.01	" : 0.01	i : 0.01	$ : 0.01	a : 0.01	
d : 0.10	b : 0.10	[ : 0.10	e : 0.09	c : 0.09	f : 0.07	= : 0.07	" : 0.05	h : 0.05	! : 0.05	g : 0.03	# : 0.03	$ : 0.03	% : 0.01	a : 0.01	i : 0.01	: : 0.01	
e : 0.12	d : 0.10	c : 0.09	! : 0.09	[ : 0.07	b : 0.07	= : 0.07	# : 0.05	" : 0.05	h : 0.05	g : 0.03	$ : 0.03	i : 0.03	f : 0.03	% : 0.01	a : 0.01	: : 0.01	
! : 0.14	c : 0.12	e : 0.09	g : 0.07	d : 0.07	" : 0.07	= : 0.07	[ : 0.05	# : 0.05	h : 0.05	f : 0.05	a : 0.03	i : 0.03	: : 0.03	$ : 0.01	
c : 0.16	g : 0.10	[ : 0.09	b : 0.09	d : 0.07	= : 0.07	! : 0.07	i : 0.05	f : 0.05	e : 0.05	# : 0.03	h : 0.03	" : 0.03	: : 0.03	$ : 0.01	
f : 0.14	c : 0.14	g : 0.10	b : 0.10	# : 0.09	d : 0.07	= : 0.07	e : 0.07	i : 0.05	h : 0.03	" : 0.03	$ : 0.01	: : 0.01	a : 0.01	
[ : 0.20	f : 0.16	e : 0.12	g : 0.09	# : 0.07	= : 0.07	c : 0.07	i : 0.05	d : 0.05	! : 0.03	h : 0.03	b : 0.01	
f : 0.21	d : 0.14	[ : 0.10	g : 0.09	e : 0.09	c : 0.07	! : 0.05	b : 0.05	# : 0.05	= : 0.05	i : 0.03	h : 0.01	
f : 0.20	d : 0.14	c : 0.12	g : 0.09	e : 0.09	b : 0.07	# : 0.05	= : 0.05	i : 0.03	a : 0.03	[ : 0.03	h : 0.01	! : 0.01	y : 0.01	
c : 0.16	f : 0.16	d : 0.14	b : 0.12	e : 0.09	g : 0.07	[ : 0.07	= : 0.05	y : 0.03	i : 0.03	h : 0.01	! : 0.01	
f : 0.16	c : 0.12	d : 0.12	b : 0.12	w : 0.07	e : 0.07	a : 0.07	= : 0.05	g : 0.03	y : 0.03	i : 0.03	[ : 0.03	h : 0.01	! : 0.01	
v : 0.30	w : 0.14	u : 0.09	t : 0.07	f : 0.07	y : 0.05	= : 0.03	a : 0.03	x : 0.03	b : 0.03	c : 0.03	i : 0.01	d : 0.01	e : 0.01	[ : 0.01	
v : 0.30	t : 0.20	u : 0.14	w : 0.14	y : 0.05	f : 0.05	x : 0.03	i : 0.01	a : 0.01	b : 0.01	
t : 0.30	v : 0.30	u : 0.14	w : 0.14	y : 0.05	x : 0.03	
t : 0.30	v : 0.30	u : 0.14	w : 0.14	y : 0.05	x : 0.03	
t : 0.30	v : 0.30	u : 0.14	w : 0.14	y : 0.05	x : 0.03	
t : 0.30	v : 0.30	u : 0.14	w : 0.14	y : 0.05	x : 0.03	
t : 0.30	v : 0.30	u : 0.14	w : 0.14	y : 0.05	x : 0.03	
t : 0.30	v : 0.30	u : 0.14	w : 0.14	y : 0.05	x : 0.03	
t : 0.30	v : 0.30	u : 0.14	w : 0.14	y : 0.05	x : 0.03	
t : 0.30	v : 0.30	u : 0.14	w : 0.14	y : 0.05	x : 0.03	
t : 0.30	v : 0.30	u : 0.14	w : 0.14	y : 0.05	x : 0.03	
v : 0.30	t : 0.23	u : 0.14	w : 0.14	y : 0.05	x : 0.03	c : 0.01	f : 0.01	e : 0.01	b : 0.01	
v : 0.30	w : 0.14	t : 0.10	y : 0.05	f : 0.05	= : 0.05	u : 0.05	d : 0.03	a : 0.03	x : 0.03	b : 0.03	g : 0.01	c : 0.01	e : 0.01	i : 0.01	
c : 0.14	f : 0.14	d : 0.12	b : 0.10	w : 0.07	a : 0.07	g : 0.05	= : 0.05	e : 0.05	] : 0.05	y : 0.03	i : 0.03	x : 0.03	
f : 0.18	b : 0.12	d : 0.12	c : 0.12	e : 0.09	] : 0.09	g : 0.07	= : 0.05	i : 0.03	x : 0.03	4 : 0.01	y : 0.01	h : 0.01	
f : 0.18	c : 0.16	d : 0.12	e : 0.09	g : 0.07	4 : 0.07	b : 0.07	= : 0.05	a : 0.05	i : 0.03	] : 0.03	y : 0.01	h : 0.01	
] : 0.23	f : 0.20	d : 0.10	g : 0.07	4 : 0.07	e : 0.07	b : 0.05	= : 0.05	3 : 0.03	i : 0.03	c : 0.03	h : 0.01	
f : 0.20	g : 0.10	e : 0.10	4 : 0.07	b : 0.07	= : 0.07	c : 0.07	3 : 0.05	d : 0.05	i : 0.05	] : 0.05	a : 0.03	h : 0.01	2 : 0.01	
f : 0.16	g : 0.10	d : 0.09	e : 0.09	b : 0.09	i : 0.07	= : 0.07	c : 0.07	] : 0.07	3 : 0.05	4 : 0.05	2 : 0.03	h : 0.01	
c : 0.18	] : 0.10	d : 0.10	g : 0.09	b : 0.07	3 : 0.07	f : 0.07	i : 0.07	e : 0.07	= : 0.07	2 : 0.05	h : 0.01	
c : 0.18	d : 0.10	3 : 0.07	b : 0.07	i : 0.07	e : 0.07	= : 0.07	] : 0.07	f : 0.05	g : 0.05	2 : 0.05	h : 0.03	6 : 0.01	4 : 0.01	a : 0.01	[ : 0.01	
c : 0.18	d : 0.09	3 : 0.09	e : 0.09	= : 0.09	f : 0.07	] : 0.07	i : 0.05	g : 0.03	h : 0.03	4 : 0.03	2 : 0.03	b : 0.03	a : 0.03	6 : 0.01	: : 0.01	
] : 0.18	c : 0.10	e : 0.09	d : 0.07	b : 0.07	f : 0.07	= : 0.07	2 : 0.07	: : 0.05	3 : 0.03	g : 0.03	4 : 0.03	i : 0.03	6 : 0.01	5 : 0.01	h : 0.01	

#score	1346.5418124401547
#seq	55
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_UTR_m1_run2.txt

#BEAR
iiiiiiiiyyyyyyyyyyyyyyyyiiiii	chr17:74730981-74731222(-)$1	241	76	105	24.3275
=!!eeeeexxxxxxxxxxxxxxxeeeee4	chr1:29486481-29486705(-)$1	224	62	91	19.4053
ffff[ddddtttttttttttdddd]ffff	chr14:39618402-39618656(-)$1	254	19	48	23.1832
=[dddd!!attttttttttta22dddd==	chr11:85372024-85372338(-)$1	314	265	294	23.4535
:eeeeewwwwwwwwwwwwwweeeeecccm	chr7:148514729-148515023(-)$1	294	147	176	20.7401
ddd!!bbwwwwwwwwwwwwwwbb22dddd	chr2:109102760-109103006(+)$1	246	108	137	21.2818
[ddddcccyyyyyyyyyyyyyyyyccc]d	chr7:148514665-148514929(-)$1	264	177	206	22.9176
=========ttttttttttt=========	chr17:30697019-30697321(+)$1	302	215	244	25.0915
=====ddddtttttttttttdddd22===	chr3:132297896-132298163(-)$1	267	135	164	24.3115
cc!!ddddtttttttttttdddd22ccc:	chr11:85371967-85372224(-)$1	257	76	105	21.9480
Eggggggguuuuuuuuuuuuggggggg::	chr3:185634773-185635024(-)$1	251	8	37	22.1622
d[ffffffyyyyyyyyyyyyyyyyfffff	chr3:37459634-37459954(+)$1	320	14	43	22.7460
iiiiiiiwwwwwwwwwwwwwwiiiiiiii	chr14:39651734-39651977(+)$1	243	178	207	24.2168
gg!!dddduuuuuuuuuuuudddd]gggg	chr17:34854950-34855297(-)$1	347	120	149	25.3532
========uuuuuuuuuuuu=========	chr6:350576-350892(+)$1	316	32	61	26.2562
eegggggggtttttttttttggggggg44	chr11:70281328-70281569(+)$1	241	68	97	23.5913
cc[eeeeewwwwwwwwwwwwwweeeeecc	chr12:102122109-102122406(+)$1	297	206	235	23.2240
cc[fffffftttttttttttffffff]cc	chrX:122735875-122736144(-)$1	269	119	148	23.0012
dd"""ddddtttttttttttdddddddd]	chr5:179048723-179048966(-)$1	243	177	206	22.8551
#bb[dddduuuuuuuuuuuudddd]bb55	chr18:12986735-12986996(+)$1	261	102	131	22.2080
iiiiiiiwwwwwwwwwwwwwwiiiiiiii	chr14:39651865-39652128(+)$1	263	47	76	24.2168
####dddduuuuuuuuuuuudddd333bb	chr1:246489047-246489368(-)$1	321	262	291	24.2696
cffffffwwwwwwwwwwwwwwffffff]c	chr15:44063587-44063831(+)$1	244	96	125	22.6055
:a[eeeeevvvvvvvvvvvvveeeee]a:	chr11:93480221-93480523(+)$1	302	7	36	22.3629
hhhh[bbwwwwwwwwwwwwwwbb22hhhh	chr2:192552364-192552680(+)$1	316	78	107	20.9558
!aeeeeeauuuuuuuuuuuua]eeeee]a	chr11:32616236-32616545(+)$1	309	82	111	24.9456
dddeeeeevvvvvvvvvvvvveeeee22d	chr7:11150829-11151078(+)$1	249	39	68	23.2188
===!!cccxxxxxxxxxxxxxxxccc22=	chr13:79885982-79886256(-)$1	274	85	114	19.5978
ee"""ddddtttttttttttdddd22eee	chr3:140684826-140685079(+)$1	253	207	236	22.8853
=====ddddtttttttttttdddd22===	chr3:132297969-132298285(-)$1	316	257	286	24.3115
:ffffffwwwwwwwwwwwwwwffffffHH	chr4:68376610-68376964(-)$1	354	194	223	20.1125
!!gggggggtttttttttttggggggg55	chrX:55784919-55785210(+)$1	291	55	84	22.4922
ggffffffvvvvvvvvvvvvvffffff22	chr12:112525214-112525613(-)$1	399	198	227	22.9912
=========ttttttttttt=========	chr6:75965324-75965595(-)$1	271	148	177	25.0915
:ddddcccyyyyyyyyyyyyyyyyccc22	chr3:194188502-194188763(-)$1	261	100	129	21.6158
g!!eeeeeuuuuuuuuuuuueeeee22gg	chr12:72050324-72050575(-)$1	251	58	87	24.8222
eeee[ddddtttttttttttddddeeeee	chr7:135072682-135072989(-)$1	307	170	199	22.9793
hh[ddddyyyyyyyyyyyyyyyydddd]h	chr3:140682185-140682468(+)$1	283	8	37	22.9518
fff!!cccuuuuuuuuuuuuccc22ffff	chr8:104439475-104439805(+)$1	330	124	153	24.2435
ddd[dddduuuuuuuuuuuudddddddd]	chr1:36790232-36790559(+)$1	327	76	105	23.7681
cc[ddddyyyyyyyyyyyyyyyyddddcc	chr1:76260525-76260738(+)$1	213	15	44	23.2955
=======vvvvvvvvvvvvv=========	chr12:105550287-105550543(+)$1	256	82	111	25.2354
==[eeeeeuuuuuuuuuuuueeeee====	chr2:38789160-38789473(-)$1	313	250	279	25.7366
gggeeeeettttttttttteeeee]gggg	chr2:70438885-70439133(-)$1	248	148	177	23.5329
e[gggggggtttttttttttggggggg]e	chr17:25634665-25634888(+)$1	223	7	36	23.8301
:ffffffvvvvvvvvvvvvvfffffffff	chr13:79888823-79889104(-)$1	281	78	107	21.6886
=========ttttttttttt=========	chr17:30697212-30697439(+)$1	227	22	51	25.0915
iiiddddvvvvvvvvvvvvvdddd]iiii	chr3:3190077-3190370(+)$1	293	65	94	24.3396
$gggggggyyyyyyyyyyyyyyyyggggg	chr11:85373100-85373393(-)$1	293	12	41	23.7398
iiiiiiivvvvvvvvvvvvviiiiiiiii	chr2:239360252-239360504(+)$1	252	217	246	24.7130
c[gggggggtttttttttttggggggg]c	chr18:60245468-60245837(+)$1	369	254	283	24.0831
&&eeeeewwwwwwwwwwwwwweeeee22e	chr21:34931017-34931344(+)$1	327	181	210	21.5258
dd[eeeeeuuuuuuuuuuuueeeee22dd	chr1:224574669-224574925(-)$1	256	158	187	24.1256
[ffffffyyyyyyyyyyyyyyyyffffff	chr8:16978515-16978809(+)$1	294	114	143	22.9810
ccffffffuuuuuuuuuuuuffffff]cc	chr2:44457286-44457576(+)$1	290	242	271	23.9012
ii[a[bbvvvvvvvvvvvvvbb]aiiiii	chr2:38790993-38791353(-)$1	360	10	39	23.6654
cc[eeeeevvvvvvvvvvvvveeeee]cc	chr6:4064697-4064961(+)$1	264	206	235	24.3434
iiiiiiiiyyyyyyyyyyyyyyyyiiiii	chr17:74730937-74731181(-)$1	244	35	64	24.3275
f[bb[cccvvvvvvvvvvvvvccc]bb]f	chr9:102888684-102889017(+)$1	333	297	326	23.0721
ff[a[cccuuuuuuuuuuuucccafffff	chr7:155573909-155574255(+)$1	346	235	264	24.5290
!!ffffffuuuuuuuuuuuuffffffddd	chr21:40566975-40567254(-)$1	279	236	265	23.6115
iiiiiiiwwwwwwwwwwwwwwiiiiiiii	chr3:140682011-140682250(+)$1	239	6	35	24.2168
dd!!ddddtttttttttttdddd22dddd	chr17:65977620-65977955(+)$1	335	165	194	22.1458

#otherMatches

#Seq PSSM
AAAGGUUAUUUUGUAACAUUUGUCUAACU	chr17:74730981-74731222(-)$1	241	76	105	24.3275
GUUGUUGUUUUUUUCUCUGUAAUGCAAUU	chr1:29486481-29486705(-)$1	224	62	91	19.4053
GGCAUAAGCAGUUAUCUCCAGCUUUUGUU	chr14:39618402-39618656(-)$1	254	19	48	23.1832
AUGAUUAGCACAUGGAUAAAGGAGAUUUC	chr11:85372024-85372338(-)$1	314	265	294	23.4535
UUGGUUAGUUUCAGUAUAAAGACCAGAGU	chr7:148514729-148515023(-)$1	294	147	176	20.7401
UACUUAUGUCUCAAACCUAAAGUUUGUAU	chr2:109102760-109103006(+)$1	246	108	137	21.2818
UGAUGCACUUUAUUCUCAUUCUUUGUGCC	chr7:148514665-148514929(-)$1	264	177	206	22.9176
UGAAUGUGUAACAAUAUUUAAUGUAUUUA	chr17:30697019-30697321(+)$1	302	215	244	25.0915
UGUUUAGAUCAAAGGCAAUAAUCUUGAAA	chr3:132297896-132298163(-)$1	267	135	164	24.3115
CACUACUUGUUAAUUAAAAAAGUUAUGAU	chr11:85371967-85372224(-)$1	257	76	105	21.9480
CAUACUUAUAUACCUGCAACUAAGUGUUU	chr3:185634773-185635024(-)$1	251	8	37	22.1622
auaauacaauauguacuauuuuucugugu	chr3:37459634-37459954(+)$1	320	14	43	22.7460
UGUUGGCUCUAACUUAAACAUGCUGAUAU	chr14:39651734-39651977(+)$1	243	178	207	24.2168
AAGCCAAUUUUGCCUUAUGUAUUGAUUUU	chr17:34854950-34855297(-)$1	347	120	149	25.3532
GCUGUAGAAUCAUCCAUCCGUCUACAGCU	chr6:350576-350892(+)$1	316	32	61	26.2562
GGGAAUAUACACAUUGCUUUUAUAUUUAA	chr11:70281328-70281569(+)$1	241	68	97	23.5913
GAUGUACAUGUAAAAUAGAUUUUGUAUUC	chr12:102122109-102122406(+)$1	297	206	235	23.2240
CUAAGGACCCUUCUAGCCCUGGUUUUAAG	chrX:122735875-122736144(-)$1	269	119	148	23.0012
GGUAAGGUAAAACGGAUAAAUGCCCCAGA	chr5:179048723-179048966(-)$1	243	177	206	22.8551
uguuccugucuucauuguuuCAGGUAUUU	chr18:12986735-12986996(+)$1	261	102	131	22.2080
UGUUGGCUCUAACUUAAACAUGCUGAUAU	chr14:39651865-39652128(+)$1	263	47	76	24.2168
UUCCUAGUGUUAAGUUUGUGGCUAUUCUG	chr1:246489047-246489368(-)$1	321	262	291	24.2696
UUUCUAAUUUUUUUUGUACAUUUGGAACA	chr15:44063587-44063831(+)$1	244	96	125	22.6055
aggccaggaauucaagaccagccugggca	chr11:93480221-93480523(+)$1	302	7	36	22.3629
aaguaaguaacaguauccuuucuagacuu	chr2:192552364-192552680(+)$1	316	78	107	20.9558
CCUGUAGCUUUUUUAAUGUUGUUUAUAUG	chr11:32616236-32616545(+)$1	309	82	111	24.9456
CAGUGUUGAAGUUGAAAUAUACAAUAGUU	chr7:11150829-11151078(+)$1	249	39	68	23.2188
UUUAAAGUAAUAAUAAAACUUGAACUGAA	chr13:79885982-79886256(-)$1	274	85	114	19.5978
GCUUUUACUCAUUAAAUACAGGUAUUGUC	chr3:140684826-140685079(+)$1	253	207	236	22.8853
UGUUUAGAUCAAAGGCAAUAAUCUUGAAA	chr3:132297969-132298285(-)$1	316	257	286	24.3115
UUUGGGGAACUCACUUUUCUGCCCCAGGU	chr4:68376610-68376964(-)$1	354	194	223	20.1125
UGUUACAUAAAAGUAGGUGAUAUGUAAGU	chrX:55784919-55785210(+)$1	291	55	84	22.4922
AACUGCACUGGGUAUGUGUGUGUGUAGAA	chr12:112525214-112525613(-)$1	399	198	227	22.9912
UAUUUUGUGGAGAAAGGGAUUACAAGAUG	chr6:75965324-75965595(-)$1	271	148	177	25.0915
UGACUUGGUUAAAAAACGUGUGCUCCAGC	chr3:194188502-194188763(-)$1	261	100	129	21.6158
auuacuaauuuuguuuacuuuuagucuuu	chr12:72050324-72050575(-)$1	251	58	87	24.8222
UUUAUAGUUGACUUAUCUGAAACUUGAAU	chr7:135072682-135072989(-)$1	307	170	199	22.9793
GUUUAUCGAUAUAAACCAAAUUAGGUAUA	chr3:140682185-140682468(+)$1	283	8	37	22.9518
CAGUUUUCCCGAUUGUAAAUGAGUUCUGA	chr8:104439475-104439805(+)$1	330	124	153	24.2435
CUAUGGGGAUGGAAAAGGGACUCCUGGGU	chr1:36790232-36790559(+)$1	327	76	105	23.7681
ACUACAGUUCUUUGUGUAUACUUCUGUGU	chr1:76260525-76260738(+)$1	213	15	44	23.2955
UGAAGUAAAAUAUAGCAAAAUAUUUUGGU	chr12:105550287-105550543(+)$1	256	82	111	25.2354
CUGUAAAGAAAUAAUACUAGCUUUGAGUU	chr2:38789160-38789473(-)$1	313	250	279	25.7366
UUUACAUGUAUUAUUUCAUUAUGUAAAAU	chr2:70438885-70439133(-)$1	248	148	177	23.5329
UAGUUCUUUACAAAUCAUAAGAAGAACAA	chr17:25634665-25634888(+)$1	223	7	36	23.8301
AUGUUCACUCUUUAUCAAUUUGAACAGAU	chr13:79888823-79889104(-)$1	281	78	107	21.6886
UGAAUGUGUAACAAUAUUUAAUGUAUUUA	chr17:30697212-30697439(+)$1	227	22	51	25.0915
AGUACUAAGAUCUUAAAAAGUGGUAACUG	chr3:3190077-3190370(+)$1	293	65	94	24.3396
UUAUUUUUAACAUGUUCAUAAUUAAAAAG	chr11:85373100-85373393(-)$1	293	12	41	23.7398
AAGGGAGUUCUUUUUUCUUUCUUCUUUCU	chr2:239360252-239360504(+)$1	252	217	246	24.7130
UACUGGAAAGGCCACUUAUAUUUCUAGAA	chr18:60245468-60245837(+)$1	369	254	283	24.0831
auguauauguauuccuucucuuguacuag	chr21:34931017-34931344(+)$1	327	181	210	21.5258
AAAAAUGUUUUUGUUGUUAUGCAUUGAUU	chr1:224574669-224574925(-)$1	256	158	187	24.1256
CACGUUAAUAACACUAGUAAAAAUAACGU	chr8:16978515-16978809(+)$1	294	114	143	22.9810
GGGGUCUUGAAUCUUAAAAAAAGGCCUCC	chr2:44457286-44457576(+)$1	290	242	271	23.9012
CUACAUCAUCCCAUUUAUAAGAAGAGAAG	chr2:38790993-38791353(-)$1	360	10	39	23.6654
UAGAAAUGUUCACGACAAAUUCAUUUGUG	chr6:4064697-4064961(+)$1	264	206	235	24.3434
AAAGGUUAUUUUGUAACAUUUGUCUAACU	chr17:74730937-74731181(-)$1	244	35	64	24.3275
CAGAGAGUAAAAGCACAGAUAACUAUCAG	chr9:102888684-102889017(+)$1	333	297	326	23.0721
AGUCGUGUUAAUAAAACCCUGCAGUUUCC	chr7:155573909-155574255(+)$1	346	235	264	24.5290
AAUUUUAUAAUCCAUUUAAAGUGAAAGUU	chr21:40566975-40567254(-)$1	279	236	265	23.6115
GUAUUUGAUCCUGAUUCUACCCAAGUACA	chr3:140682011-140682250(+)$1	239	6	35	24.2168
UAUUUCAAUAUAAAGUCCUUUGACUUAGU	chr17:65977620-65977955(+)$1	335	165	194	22.1458

#DB
((((((((................)))))	chr17:74730981-74731222(-)$1	1	76	105	24.3275
(..(((((...............))))).	chr1:29486481-29486705(-)$1	1	62	91	19.4053
((((.((((...........)))).))))	chr14:39618402-39618656(-)$1	1	19	48	23.1832
(.((((..(...........)..))))))	chr11:85372024-85372338(-)$1	1	265	294	23.4535
.(((((..............)))))(((.	chr7:148514729-148515023(-)$1	1	147	176	20.7401
(((..((..............))..))))	chr2:109102760-109103006(+)$1	1	108	137	21.2818
.(((((((................))).)	chr7:148514665-148514929(-)$1	1	177	206	22.9176
(((((((((...........)))))))))	chr17:30697019-30697321(+)$1	1	215	244	25.0915
(((((((((...........))))..)))	chr3:132297896-132298163(-)$1	1	135	164	24.3115
((..((((...........))))..))).	chr11:85371967-85372224(-)$1	1	76	105	21.9480
((((((((............)))))))..	chr3:185634773-185635024(-)$1	1	8	37	22.1622
(.((((((................)))))	chr3:37459634-37459954(+)$1	1	14	43	22.7460
(((((((..............))))))))	chr14:39651734-39651977(+)$1	1	178	207	24.2168
((..((((............)))).))))	chr17:34854950-34855297(-)$1	1	120	149	25.3532
((((((((............)))))))))	chr6:350576-350892(+)$1	1	32	61	26.2562
(((((((((...........)))))))..	chr11:70281328-70281569(+)$1	1	68	97	23.5913
((.(((((..............)))))))	chr12:102122109-102122406(+)$1	1	206	235	23.2240
((.((((((...........)))))).))	chrX:122735875-122736144(-)$1	1	119	148	23.0012
((...((((...........)))))))).	chr5:179048723-179048966(-)$1	1	177	206	22.8551
.((.((((............)))).))..	chr18:12986735-12986996(+)$1	1	102	131	22.2080
(((((((..............))))))))	chr14:39651865-39652128(+)$1	1	47	76	24.2168
....((((............))))...))	chr1:246489047-246489368(-)$1	1	262	291	24.2696
(((((((..............)))))).)	chr15:44063587-44063831(+)$1	1	96	125	22.6055
.(.(((((.............))))).).	chr11:93480221-93480523(+)$1	1	7	36	22.3629
((((.((..............))..))))	chr2:192552364-192552680(+)$1	1	78	107	20.9558
.(((((((............).))))).)	chr11:32616236-32616545(+)$1	1	82	111	24.9456
((((((((.............)))))..)	chr7:11150829-11151078(+)$1	1	39	68	23.2188
(((..(((...............)))..)	chr13:79885982-79886256(-)$1	1	85	114	19.5978
((...((((...........))))..)))	chr3:140684826-140685079(+)$1	1	207	236	22.8853
(((((((((...........))))..)))	chr3:132297969-132298285(-)$1	1	257	286	24.3115
.((((((..............))))))))	chr4:68376610-68376964(-)$1	1	194	223	20.1125
..(((((((...........)))))))..	chrX:55784919-55785210(+)$1	1	55	84	22.4922
((((((((.............))))))..	chr12:112525214-112525613(-)$1	1	198	227	22.9912
(((((((((...........)))))))))	chr6:75965324-75965595(-)$1	1	148	177	25.0915
.(((((((................)))..	chr3:194188502-194188763(-)$1	1	100	129	21.6158
(..(((((............)))))..))	chr12:72050324-72050575(-)$1	1	58	87	24.8222
((((.((((...........)))))))))	chr7:135072682-135072989(-)$1	1	170	199	22.9793
((.((((................)))).)	chr3:140682185-140682468(+)$1	1	8	37	22.9518
(((..(((............)))..))))	chr8:104439475-104439805(+)$1	1	124	153	24.2435
(((.((((............)))))))).	chr1:36790232-36790559(+)$1	1	76	105	23.7681
((.((((................))))))	chr1:76260525-76260738(+)$1	1	15	44	23.2955
(((((((.............)))))))))	chr12:105550287-105550543(+)$1	1	82	111	25.2354
((.(((((............)))))))))	chr2:38789160-38789473(-)$1	1	250	279	25.7366
((((((((...........))))).))))	chr2:70438885-70439133(-)$1	1	148	177	23.5329
(.(((((((...........))))))).)	chr17:25634665-25634888(+)$1	1	7	36	23.8301
.((((((.............))))))(((	chr13:79888823-79889104(-)$1	1	78	107	21.6886
(((((((((...........)))))))))	chr17:30697212-30697439(+)$1	1	22	51	25.0915
(((((((.............)))).))))	chr3:3190077-3190370(+)$1	1	65	94	24.3396
.(((((((................)))))	chr11:85373100-85373393(-)$1	1	12	41	23.7398
(((((((.............)))))))))	chr2:239360252-239360504(+)$1	1	217	246	24.7130
(.(((((((...........))))))).)	chr18:60245468-60245837(+)$1	1	254	283	24.0831
..(((((..............)))))..)	chr21:34931017-34931344(+)$1	1	181	210	21.5258
((.(((((............)))))..))	chr1:224574669-224574925(-)$1	1	158	187	24.1256
.((((((................))))))	chr8:16978515-16978809(+)$1	1	114	143	22.9810
((((((((............)))))).))	chr2:44457286-44457576(+)$1	1	242	271	23.9012
((.(.((.............)).))))))	chr2:38790993-38791353(-)$1	1	10	39	23.6654
((.(((((.............))))).))	chr6:4064697-4064961(+)$1	1	206	235	24.3434
((((((((................)))))	chr17:74730937-74731181(-)$1	1	35	64	24.3275
(.((.(((.............))).)).)	chr9:102888684-102889017(+)$1	1	297	326	23.0721
((.(.(((............)))))))))	chr7:155573909-155574255(+)$1	1	235	264	24.5290
..((((((............)))))))))	chr21:40566975-40567254(-)$1	1	236	265	23.6115
(((((((..............))))))))	chr3:140682011-140682250(+)$1	1	6	35	24.2168
((..((((...........))))..))))	chr17:65977620-65977955(+)$1	1	165	194	22.1458

#PSSM
= : 0.17	i : 0.12	c : 0.12	d : 0.11	: : 0.07	f : 0.06	g : 0.06	e : 0.06	! : 0.04	[ : 0.03	# : 0.03	h : 0.03	E : 0.01	$ : 0.01	& : 0.01	
= : 0.14	i : 0.12	d : 0.12	f : 0.11	c : 0.09	[ : 0.07	g : 0.07	! : 0.06	e : 0.06	a : 0.03	h : 0.03	b : 0.01	# : 0.01	& : 0.01	
f : 0.15	[ : 0.15	= : 0.12	i : 0.11	g : 0.11	d : 0.09	! : 0.07	e : 0.06	" : 0.03	b : 0.03	# : 0.01	h : 0.01	
e : 0.20	f : 0.15	= : 0.11	i : 0.09	d : 0.09	! : 0.09	g : 0.09	" : 0.03	[ : 0.03	a : 0.03	# : 0.01	h : 0.01	b : 0.01	
e : 0.19	d : 0.19	f : 0.14	= : 0.11	i : 0.09	[ : 0.09	g : 0.09	! : 0.04	" : 0.03	
d : 0.25	e : 0.19	f : 0.14	i : 0.09	c : 0.09	g : 0.09	= : 0.07	b : 0.04	
d : 0.23	e : 0.17	f : 0.14	i : 0.09	c : 0.09	g : 0.09	= : 0.07	b : 0.04	! : 0.01	w : 0.01	
d : 0.19	e : 0.14	w : 0.14	c : 0.09	g : 0.09	f : 0.07	v : 0.07	= : 0.06	y : 0.04	i : 0.03	! : 0.01	a : 0.01	
u : 0.22	w : 0.15	v : 0.15	y : 0.14	d : 0.09	g : 0.06	= : 0.04	t : 0.04	x : 0.03	a : 0.01	f : 0.01	
t : 0.28	u : 0.22	w : 0.15	v : 0.15	y : 0.14	x : 0.03	
t : 0.28	u : 0.22	w : 0.15	v : 0.15	y : 0.14	x : 0.03	
t : 0.28	u : 0.22	w : 0.15	v : 0.15	y : 0.14	x : 0.03	
t : 0.28	u : 0.22	w : 0.15	v : 0.15	y : 0.14	x : 0.03	
t : 0.28	u : 0.22	w : 0.15	v : 0.15	y : 0.14	x : 0.03	
t : 0.28	u : 0.22	w : 0.15	v : 0.15	y : 0.14	x : 0.03	
t : 0.28	u : 0.22	w : 0.15	v : 0.15	y : 0.14	x : 0.03	
t : 0.28	u : 0.22	w : 0.15	v : 0.15	y : 0.14	x : 0.03	
t : 0.28	u : 0.22	w : 0.15	v : 0.15	y : 0.14	x : 0.03	
t : 0.28	u : 0.22	w : 0.15	v : 0.15	y : 0.14	x : 0.03	
t : 0.23	u : 0.22	w : 0.15	v : 0.15	y : 0.14	x : 0.03	d : 0.03	e : 0.01	
d : 0.20	y : 0.14	w : 0.14	e : 0.07	= : 0.07	g : 0.07	v : 0.07	f : 0.06	x : 0.03	a : 0.03	c : 0.03	i : 0.01	b : 0.01	
d : 0.20	y : 0.14	e : 0.14	f : 0.11	= : 0.07	g : 0.07	i : 0.06	b : 0.04	c : 0.04	x : 0.03	2 : 0.01	w : 0.01	] : 0.01	
d : 0.20	e : 0.17	y : 0.14	f : 0.11	= : 0.07	g : 0.07	i : 0.06	c : 0.04	x : 0.03	b : 0.03	2 : 0.01	] : 0.01	
d : 0.22	e : 0.19	f : 0.12	y : 0.09	2 : 0.07	= : 0.07	g : 0.07	i : 0.06	c : 0.03	a : 0.03	
e : 0.19	f : 0.15	2 : 0.12	i : 0.11	] : 0.09	g : 0.09	d : 0.07	= : 0.07	c : 0.04	3 : 0.01	
f : 0.19	i : 0.12	e : 0.12	g : 0.12	d : 0.11	= : 0.09	c : 0.07	2 : 0.07	b : 0.03	3 : 0.01	h : 0.01	
f : 0.14	i : 0.12	d : 0.12	= : 0.12	g : 0.12	e : 0.07	2 : 0.07	c : 0.06	] : 0.06	b : 0.03	3 : 0.01	h : 0.01	
= : 0.14	i : 0.12	c : 0.11	] : 0.11	f : 0.09	d : 0.09	2 : 0.07	g : 0.06	e : 0.04	5 : 0.03	: : 0.01	4 : 0.01	b : 0.01	a : 0.01	h : 0.01	H : 0.01	
= : 0.15	i : 0.12	f : 0.11	c : 0.11	d : 0.09	g : 0.06	e : 0.06	: : 0.04	4 : 0.03	] : 0.03	5 : 0.03	h : 0.03	2 : 0.03	m : 0.01	b : 0.01	a : 0.01	H : 0.01	

#score	1470.4458689973007
#seq	63
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_CDS_m3_run1.txt

#BEAR
####eeeeeccc^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr4:24538635-24538893(-)$1	258	182	222	53.1252
####iiiiiiiii^^^^^^^^^^^^^^^^^^^^^^^^iii	chr16:28837469-28837709(+)$1	240	8	48	52.5906

#otherMatches

#Seq PSSM
UCUGACACUGCUGAACGUCUACCAUGCUUUUAAACAAAGU	chr4:24538635-24538893(-)$1	258	182	222	53.1252
CUAUUUAAGAGAAAUCCAGUUCUAUUUUUGCCUUCACUUU	chr16:28837469-28837709(+)$1	240	8	48	52.5906

#DB
....((((((((.........................)))	chr4:24538635-24538893(-)$1	1	182	222	53.1252
....(((((((((........................)))	chr16:28837469-28837709(+)$1	1	8	48	52.5906

#PSSM
# : 1.00	
# : 1.00	
# : 1.00	
# : 1.00	
e : 0.50	i : 0.50	
e : 0.50	i : 0.50	
e : 0.50	i : 0.50	
e : 0.50	i : 0.50	
e : 0.50	i : 0.50	
c : 0.50	i : 0.50	
c : 0.50	i : 0.50	
c : 0.50	i : 0.50	
^ : 0.50	i : 0.50	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
c : 0.50	i : 0.50	
c : 0.50	i : 0.50	
c : 0.50	i : 0.50	

#score	105.71589742495001
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_CDS_m1_run2.txt

#BEAR
ffffffuuuuuuuuuuuuffff	chr20:35236175-35236421(+)$1	246	56	78	19.8864
fffff^^^^^^^^^^^^^^^^^	chr1:90492974-90493279(+)$1	305	166	188	17.3553
b[ccctttttttttttccc]bb	chr3:37367821-37368080(+)$1	259	93	115	17.5077
hhhhhuuuuuuuuuuuuhhhhh	chr22:24313601-24313849(-)$1	248	16	38	17.2980
fffffxxxxxxxxxxxxxxxff	chr22:24313477-24313756(-)$1	279	154	176	16.8770
:cccwwwwwwwwwwwwwwccc:	chr1:16891198-16891504(-)$1	306	170	192	19.4236
fffffwwwwwwwwwwwwwwfff	chr12:42707575-42707810(-)$1	235	138	160	20.8894
^^^^^^^^^^^^^^^^^^ccc]	chr5:71491259-71491569(+)$1	310	106	128	17.1441
gg!!ccctttttttttttccc2	chr9:100774629-100774848(+)$1	219	70	92	18.0725
eeeeettttttttttteeeee]	chr4:1018978-1019235(+)$1	257	134	156	17.5599
eeeexxxxxxxxxxxxxxxeee	chr14:65233292-65233506(-)$1	214	112	134	16.7423
#ccc^^^^^^^^^^^^^^^^^^	chr5:149777853-149778097(+)$1	244	184	206	17.7112
ggggggtttttttttttggggg	chr1:154148611-154148821(-)$1	210	132	154	17.6258
f:dddduuuuuuuuuuuudddd	chr19:10488907-10489149(-)$1	242	17	39	18.1480
fffffvvvvvvvvvvvvvffff	chr21:47613507-47613726(-)$1	219	141	163	21.5525
!!cccwwwwwwwwwwwwwwccc	chr9:131456183-131456389(+)$1	206	130	152	21.4818
fffffvvvvvvvvvvvvvffff	chr21:47612911-47613147(-)$1	236	40	62	21.5525
eeeeettttttttttteeeee6	chr12:76448730-76448970(-)$1	240	124	146	17.2007
fffffvvvvvvvvvvvvvffff	chr21:47613498-47613706(-)$1	208	121	143	21.5525
:ddddvvvvvvvvvvvvvdddd	chr21:47612973-47613188(-)$1	215	52	74	19.7500
fffffvvvvvvvvvvvvvffff	chr21:47612962-47613173(-)$1	211	66	88	21.5525
^^^^^^^^^^^^^^^^^^a]ee	chr13:98666203-98666440(+)$1	237	53	75	16.7795
e[eeeeettttttttttteeee	chr4:145974804-145975061(-)$1	257	170	192	17.2218
^^^^^^^^^^^^^^^^^^^^^^	chr14:50255843-50256151(-)$1	308	104	126	17.3888
B:dddduuuuuuuuuuuudddd	chr2:190340034-190340290(+)$1	256	20	42	17.2620
eeeeeuuuuuuuuuuuueeeee	chr12:6692363-6692597(-)$1	234	86	108	19.8386
eeeeettttttttttteeeee6	chr12:76448698-76448930(-)$1	232	84	106	17.2007
cc[cccuuuuuuuuuuuuccc]	chr5:145883286-145883535(+)$1	249	170	192	20.6935
cccccvvvvvvvvvvvvvccc]	chr1:94341723-94341971(-)$1	248	81	103	22.2059
ggggg^^^^^^^^^^^^^^^^^	chr9:134353799-134354063(+)$1	264	165	187	17.3698
ddd^^^^^^^^^^^^^^^^^^^	chr14:102551021-102551256(-)$1	235	69	91	17.2124
cc^^^^^^^^^^^^^^^^^^cc	chr10:50534924-50535238(+)$1	314	142	164	17.4263
cccxxxxxxxxxxxxxxxccc]	chr19:41083783-41084145(+)$1	362	174	196	17.1150
!!cccwwwwwwwwwwwwwwccc	chr9:131456127-131456364(+)$1	237	186	208	21.4818
[eeeeettttttttttteeeee	chr1:193091334-193091563(+)$1	229	202	224	17.7579
a[cccvvvvvvvvvvvvvccc]	chr12:80214502-80214760(-)$1	258	155	177	22.2844
gggggvvvvvvvvvvvvvgggg	chr4:39324859-39325138(-)$1	279	209	231	21.5501
fff[attttttttttta]ffff	chr5:162905589-162905881(+)$1	292	237	259	18.2835
[a[bb^^^^^^^^^^^^^^^^^	chr12:76449751-76449978(-)$1	227	64	86	17.0703
ddd^^^^^^^^^^^^^^^^^^^	chr14:102551017-102551221(-)$1	204	34	56	17.2124
eeeeevvvvvvvvvvvvveeee	chr6:42627236-42627535(+)$1	299	223	245	21.3376
ddd^^^^^^^^^^^^^^^^^^^	chr14:102551056-102551272(-)$1	216	85	107	17.2124
dd"""auuuuuuuuuuuua333	chr14:73569965-73570202(+)$1	237	94	116	20.5199
^^^^^^^^^^^^^^^^^^^eee	chr14:35522513-35522766(+)$1	253	12	34	16.9857
!!cccwwwwwwwwwwwwwwccc	chr9:131456164-131456378(+)$1	214	149	171	21.4818
gg!!ccctttttttttttccc2	chr9:100774648-100774854(+)$1	206	51	73	18.0725
ggggguuuuuuuuuuuuggggg	chr4:68378008-68378268(-)$1	260	120	142	19.9540
eeeee^^^^^^^^^^^^^^^^^	chr1:235377157-235377416(-)$1	259	67	89	17.2096
gbb[ccctttttttttttcccb	chr1:67425296-67425527(+)$1	231	27	49	17.3618
[cccwwwwwwwwwwwwwwccc]	chr10:91498211-91498472(+)$1	261	16	38	21.4072
fffffvvvvvvvvvvvvvffff	chr15:59205685-59205919(-)$1	234	136	158	21.5525
ggggggtttttttttttggggg	chr6:26056058-26056306(-)$1	248	139	161	17.6258
"bbbbtttttttttttbb]bb3	chr14:65235649-65235868(-)$1	219	33	55	16.4419
#ccc[attttttttttta]ccc	chr19:10479137-10479391(-)$1	254	160	182	19.2606
ddddyyyyyyyyyyyyyyyydd	chr21:46945766-46946019(-)$1	253	227	249	18.4062
:ddddvvvvvvvvvvvvvdddd	chr3:121416149-121416396(-)$1	247	5	27	19.7500
fffffvvvvvvvvvvvvvffff	chr21:47612954-47613160(-)$1	206	53	75	21.5525
^^^^^^^^^^^^^^^^^^^eee	chr12:6879000-6879265(+)$1	265	145	167	16.9857
b^^^^^^^^^^^^^^^^^^^^^	chr19:11339932-11340203(-)$1	271	28	50	17.2497
fffffvvvvvvvvvvvvvffff	chr21:47613464-47613668(-)$1	204	83	105	21.5525
a^^^^^^^^^^^^^^^^^^^^^	chr9:100773523-100773771(+)$1	248	31	53	17.4729
eeeeevvvvvvvvvvvvveeee	chr7:106840502-106840758(+)$1	256	218	240	21.3376
!!cccwwwwwwwwwwwwwwccc	chr9:131456178-131456383(+)$1	205	135	157	21.4818
fffff^^^^^^^^^^^^^^^^^	chr1:90493079-90493349(+)$1	270	61	83	17.3553
eeee^^^^^^^^^^^^^^^^^^	chr12:42707409-42707648(-)$1	239	165	187	17.4282
b[cccvvvvvvvvvvvvvccc]	chr6:31857192-31857419(-)$1	227	163	185	22.0611
"bbbbtttttttttttbb]bb3	chr14:65235668-65235929(-)$1	261	94	116	16.4419
fffffvvvvvvvvvvvvvffff	chr21:47613468-47613696(-)$1	228	111	133	21.5525
!!cccwwwwwwwwwwwwwwccc	chr9:131456194-131456419(+)$1	225	119	141	21.4818
hhhhhuuuuuuuuuuuuhhhhh	chr21:47612318-47612551(-)$1	233	6	28	17.2980
[cccwwwwwwwwwwwwwwccc]	chr12:133147963-133148208(+)$1	245	206	228	21.4072
fffffvvvvvvvvvvvvvffff	chr21:47613526-47613750(-)$1	224	165	187	21.5525

#otherMatches

#Seq PSSM
GGUAUCUUAUAUUUUCAUGGUA	chr20:35236175-35236421(+)$1	246	56	78	19.8864
guagggguagugggagaaguag	chr1:90492974-90493279(+)$1	305	166	188	17.3553
AGUCUAAUUUAGAAACAGAGUU	chr3:37367821-37368080(+)$1	259	93	115	17.5077
CUUUUUCUCUGUCUCCUGAAGG	chr22:24313601-24313849(-)$1	248	16	38	17.2980
UUCAUCCUCAUAUGAAAUAAAU	chr22:24313477-24313756(-)$1	279	154	176	16.8770
aggggaagaagaUCAAAACCCA	chr1:16891198-16891504(-)$1	306	170	192	19.4236
UGUAUAUUAUUCUUACUAAAUA	chr12:42707575-42707810(-)$1	235	138	160	20.8894
caaaaaagaaaUUAAGAAGCUC	chr5:71491259-71491569(+)$1	310	106	128	17.1441
UAGGAAGAAGAAUUUGGACUUG	chr9:100774629-100774848(+)$1	219	70	92	18.0725
AGCACAUCCACUAUCAGUGCUA	chr4:1018978-1019235(+)$1	257	134	156	17.5599
AGCCCUCUCACCCCUACUAGGC	chr14:65233292-65233506(-)$1	214	112	134	16.7423
AGGCCAGAAAACAGACCCAAAC	chr5:149777853-149778097(+)$1	244	184	206	17.7112
CCAGCUGGUUGAAGAAGAGCUG	chr1:154148611-154148821(-)$1	210	132	154	17.6258
UUGGGAGCUGACAGAUUGUCCC	chr19:10488907-10489149(-)$1	242	17	39	18.1480
gugccacacacagacauaggua	chr21:47613507-47613726(-)$1	219	141	163	21.5525
aaggagagguaaaagaaAAUUU	chr9:131456183-131456389(+)$1	206	130	152	21.4818
gugccacacacagacauaggua	chr21:47612911-47613147(-)$1	236	40	62	21.5525
CACUUGAAAGAUAUUAAAGUGA	chr12:76448730-76448970(-)$1	240	124	146	17.2007
gugccacacacagacauaggua	chr21:47613498-47613706(-)$1	208	121	143	21.5525
caugcagauacacccacagcau	chr21:47612973-47613188(-)$1	215	52	74	19.7500
gugccacacacagacauaggua	chr21:47612962-47613173(-)$1	211	66	88	21.5525
AAUAAUAAACAGUCUUUUGAGG	chr13:98666203-98666440(+)$1	237	53	75	16.7795
AGUCUCAGGAUAAAGGAAUGAG	chr4:145974804-145975061(-)$1	257	170	192	17.2218
CAAAGAAGAAAAAGGGAAGAAG	chr14:50255843-50256151(-)$1	308	104	126	17.3888
AAGACAUUAUACAUCAGUUGUC	chr2:190340034-190340290(+)$1	256	20	42	17.2620
CAGGAAGAAAGUGUGGAUCCUG	chr12:6692363-6692597(-)$1	234	86	108	19.8386
CACUUGAAAGAUAUUAAAGUGA	chr12:76448698-76448930(-)$1	232	84	106	17.2007
AAAGGGAGGUUCAAAAGGCCCG	chr5:145883286-145883535(+)$1	249	170	192	20.6935
ACCAUGACGAAAAUGAAGAUGA	chr1:94341723-94341971(-)$1	248	81	103	22.2059
CUGCUGGAGGAAGAGAGAAGAA	chr9:134353799-134354063(+)$1	264	165	187	17.3698
auggugacaagaagaagaagaa	chr14:102551021-102551256(-)$1	235	69	91	17.2124
CCAAGACGACCUCACCCAAAGG	chr10:50534924-50535238(+)$1	314	142	164	17.4263
UACCCCUUGACAUUCUCUGUGC	chr19:41083783-41084145(+)$1	362	174	196	17.1150
aaggagagguaaaagaaAAUUU	chr9:131456127-131456364(+)$1	237	186	208	21.4818
CUCCCCCCGUUUCCCCUGGGGA	chr1:193091334-193091563(+)$1	229	202	224	17.7579
UGCUCUAGUGAAGAAGAUGAGG	chr12:80214502-80214760(-)$1	258	155	177	22.2844
AAUAUACAGUACAGAUCAGUGU	chr4:39324859-39325138(-)$1	279	209	231	21.5501
CACUCUUAAAUAUGAUGUGUGC	chr5:162905589-162905881(+)$1	292	237	259	18.2835
GAAGAUGAGAAAAAAGAUGAAG	chr12:76449751-76449978(-)$1	227	64	86	17.0703
auggugacaagaagaagaagaa	chr14:102551017-102551221(-)$1	204	34	56	17.2124
ACAAUUCGUUACAUGUAUAUUG	chr6:42627236-42627535(+)$1	299	223	245	21.3376
auggugacaagaagaagaagaa	chr14:102551056-102551272(-)$1	216	85	107	17.2124
gggaacgagaacgggauaggga	chr14:73569965-73570202(+)$1	237	94	116	20.5199
AUAGGAAAAAAGAAGAAAGUCC	chr14:35522513-35522766(+)$1	253	12	34	16.9857
aaggagagguaaaagaaAAUUU	chr9:131456164-131456378(+)$1	214	149	171	21.4818
UAGGAAGAAGAAUUUGGACUUG	chr9:100774648-100774854(+)$1	206	51	73	18.0725
UGAUUGGUGGGUGGUAAAAUCA	chr4:68378008-68378268(-)$1	260	120	142	19.9540
CUUUCAAGAGAUGAAACGAAUA	chr1:235377157-235377416(-)$1	259	67	89	17.2096
GCAGUCAUUUUAUAGUAUUGGU	chr1:67425296-67425527(+)$1	231	27	49	17.3618
UUCUGUCAAAAACACCAAAGAU	chr10:91498211-91498472(+)$1	261	16	38	21.4072
UCUCUGCAGAAGAAAACAAGAG	chr15:59205685-59205919(-)$1	234	136	158	21.5525
GCCACUGUAACCAAGAAAGUGG	chr6:26056058-26056306(-)$1	248	139	161	17.6258
UCCGCGAGAAACUGCAGCAGGU	chr14:65235649-65235868(-)$1	219	33	55	16.4419
GGCAACGUGAGACUGAAGCUGC	chr19:10479137-10479391(-)$1	254	160	182	19.2606
AGACCAUCAUCACUUUCAUUGU	chr21:46945766-46946019(-)$1	253	227	249	18.4062
UGAGCAGAGAAAGAGAAAGCUC	chr3:121416149-121416396(-)$1	247	5	27	19.7500
gugccacacacagacauaggua	chr21:47612954-47613160(-)$1	206	53	75	21.5525
agaugaaggggaagaagaaggu	chr12:6879000-6879265(+)$1	265	145	167	16.9857
CCUACCUCUUUUCCCCAUCCCU	chr19:11339932-11340203(-)$1	271	28	50	17.2497
gugccacacacagacauaggua	chr21:47613464-47613668(-)$1	204	83	105	21.5525
ggagaagaugaggaagacgagg	chr9:100773523-100773771(+)$1	248	31	53	17.4729
GUUGGAAGAGGAAAAGAACCAA	chr7:106840502-106840758(+)$1	256	218	240	21.3376
aaggagagguaaaagaaAAUUU	chr9:131456178-131456383(+)$1	205	135	157	21.4818
guagggguagugggagaaguag	chr1:90493079-90493349(+)$1	270	61	83	17.3553
UUGUUCUUUUAAAAGGCAUCAU	chr12:42707409-42707648(-)$1	239	165	187	17.4282
CAGUCAGAUAGGGUAAGAGACG	chr6:31857192-31857419(-)$1	227	163	185	22.0611
UCCGCGAGAAACUGCAGCAGGU	chr14:65235668-65235929(-)$1	261	94	116	16.4419
gugccacacacagacauaggua	chr21:47613468-47613696(-)$1	228	111	133	21.5525
aaggagagguaaaagaaAAUUU	chr9:131456194-131456419(+)$1	225	119	141	21.4818
GAUGCACCCGCAGUAUCGCAUC	chr21:47612318-47612551(-)$1	233	6	28	17.2980
AGGCACACACAGACACACGCUC	chr12:133147963-133148208(+)$1	245	206	228	21.4072
gugccacacacagacauaggua	chr21:47613526-47613750(-)$1	224	165	187	21.5525

#DB
((((((............))))	chr20:35236175-35236421(+)$1	1	56	78	19.8864
(((((.................	chr1:90492974-90493279(+)$1	1	166	188	17.3553
(.(((...........))).))	chr3:37367821-37368080(+)$1	1	93	115	17.5077
(((((............)))))	chr22:24313601-24313849(-)$1	1	16	38	17.2980
(((((...............))	chr22:24313477-24313756(-)$1	1	154	176	16.8770
.(((..............))).	chr1:16891198-16891504(-)$1	1	170	192	19.4236
(((((..............)))	chr12:42707575-42707810(-)$1	1	138	160	20.8894
..................))).	chr5:71491259-71491569(+)$1	1	106	128	17.1441
((..(((...........))).	chr9:100774629-100774848(+)$1	1	70	92	18.0725
(((((...........))))).	chr4:1018978-1019235(+)$1	1	134	156	17.5599
((((...............)))	chr14:65233292-65233506(-)$1	1	112	134	16.7423
.(((..................	chr5:149777853-149778097(+)$1	1	184	206	17.7112
((((((...........)))))	chr1:154148611-154148821(-)$1	1	132	154	17.6258
).((((............))))	chr19:10488907-10489149(-)$1	1	17	39	18.1480
(((((.............))))	chr21:47613507-47613726(-)$1	1	141	163	21.5525
..(((..............)))	chr9:131456183-131456389(+)$1	1	130	152	21.4818
(((((.............))))	chr21:47612911-47613147(-)$1	1	40	62	21.5525
(((((...........))))).	chr12:76448730-76448970(-)$1	1	124	146	17.2007
(((((.............))))	chr21:47613498-47613706(-)$1	1	121	143	21.5525
.((((.............))))	chr21:47612973-47613188(-)$1	1	52	74	19.7500
(((((.............))))	chr21:47612962-47613173(-)$1	1	66	88	21.5525
..................).))	chr13:98666203-98666440(+)$1	1	53	75	16.7795
(.(((((...........))))	chr4:145974804-145975061(-)$1	1	170	192	17.2218
......................	chr14:50255843-50256151(-)$1	1	104	126	17.3888
(.((((............))))	chr2:190340034-190340290(+)$1	1	20	42	17.2620
(((((............)))))	chr12:6692363-6692597(-)$1	1	86	108	19.8386
(((((...........))))).	chr12:76448698-76448930(-)$1	1	84	106	17.2007
((.(((............))).	chr5:145883286-145883535(+)$1	1	170	192	20.6935
(((((.............))).	chr1:94341723-94341971(-)$1	1	81	103	22.2059
(((((.................	chr9:134353799-134354063(+)$1	1	165	187	17.3698
(((...................	chr14:102551021-102551256(-)$1	1	69	91	17.2124
((..................))	chr10:50534924-50535238(+)$1	1	142	164	17.4263
(((...............))).	chr19:41083783-41084145(+)$1	1	174	196	17.1150
..(((..............)))	chr9:131456127-131456364(+)$1	1	186	208	21.4818
.(((((...........)))))	chr1:193091334-193091563(+)$1	1	202	224	17.7579
(.(((.............))).	chr12:80214502-80214760(-)$1	1	155	177	22.2844
(((((.............))))	chr4:39324859-39325138(-)$1	1	209	231	21.5501
(((.(...........).))))	chr5:162905589-162905881(+)$1	1	237	259	18.2835
.(.((.................	chr12:76449751-76449978(-)$1	1	64	86	17.0703
(((...................	chr14:102551017-102551221(-)$1	1	34	56	17.2124
(((((.............))))	chr6:42627236-42627535(+)$1	1	223	245	21.3376
(((...................	chr14:102551056-102551272(-)$1	1	85	107	17.2124
((...(............)...	chr14:73569965-73570202(+)$1	1	94	116	20.5199
...................)))	chr14:35522513-35522766(+)$1	1	12	34	16.9857
..(((..............)))	chr9:131456164-131456378(+)$1	1	149	171	21.4818
((..(((...........))).	chr9:100774648-100774854(+)$1	1	51	73	18.0725
(((((............)))))	chr4:68378008-68378268(-)$1	1	120	142	19.9540
(((((.................	chr1:235377157-235377416(-)$1	1	67	89	17.2096
(((.(((...........))))	chr1:67425296-67425527(+)$1	1	27	49	17.3618
.(((..............))).	chr10:91498211-91498472(+)$1	1	16	38	21.4072
(((((.............))))	chr15:59205685-59205919(-)$1	1	136	158	21.5525
((((((...........)))))	chr6:26056058-26056306(-)$1	1	139	161	17.6258
.((((...........)).)).	chr14:65235649-65235868(-)$1	1	33	55	16.4419
.(((.(...........).)))	chr19:10479137-10479391(-)$1	1	160	182	19.2606
((((................))	chr21:46945766-46946019(-)$1	1	227	249	18.4062
.((((.............))))	chr3:121416149-121416396(-)$1	1	5	27	19.7500
(((((.............))))	chr21:47612954-47613160(-)$1	1	53	75	21.5525
...................)))	chr12:6879000-6879265(+)$1	1	145	167	16.9857
(.....................	chr19:11339932-11340203(-)$1	1	28	50	17.2497
(((((.............))))	chr21:47613464-47613668(-)$1	1	83	105	21.5525
(.....................	chr9:100773523-100773771(+)$1	1	31	53	17.4729
(((((.............))))	chr7:106840502-106840758(+)$1	1	218	240	21.3376
..(((..............)))	chr9:131456178-131456383(+)$1	1	135	157	21.4818
(((((.................	chr1:90493079-90493349(+)$1	1	61	83	17.3553
((((..................	chr12:42707409-42707648(-)$1	1	165	187	17.4282
(.(((.............))).	chr6:31857192-31857419(-)$1	1	163	185	22.0611
.((((...........)).)).	chr14:65235668-65235929(-)$1	1	94	116	16.4419
(((((.............))))	chr21:47613468-47613696(-)$1	1	111	133	21.5525
..(((..............)))	chr9:131456194-131456419(+)$1	1	119	141	21.4818
(((((............)))))	chr21:47612318-47612551(-)$1	1	6	28	17.2980
.(((..............))).	chr12:133147963-133148208(+)$1	1	206	228	21.4072
(((((.............))))	chr21:47613526-47613750(-)$1	1	165	187	21.5525

#PSSM
f : 0.22	e : 0.13	g : 0.11	^ : 0.06	! : 0.06	d : 0.06	c : 0.05	[ : 0.05	b : 0.04	: : 0.04	h : 0.02	# : 0.02	a : 0.02	" : 0.02	B : 0.01	
f : 0.20	e : 0.13	c : 0.12	^ : 0.09	g : 0.09	d : 0.09	! : 0.06	[ : 0.05	b : 0.04	h : 0.02	: : 0.02	a : 0.01	
f : 0.20	c : 0.20	e : 0.15	^ : 0.11	d : 0.11	g : 0.06	b : 0.04	h : 0.02	! : 0.02	[ : 0.02	" : 0.01	
c : 0.20	f : 0.19	^ : 0.15	e : 0.15	g : 0.06	d : 0.06	b : 0.04	h : 0.02	! : 0.02	[ : 0.02	x : 0.01	" : 0.01	
f : 0.19	c : 0.18	^ : 0.18	e : 0.12	g : 0.06	d : 0.05	w : 0.04	b : 0.04	h : 0.02	x : 0.02	a : 0.01	" : 0.01	[ : 0.01	y : 0.01	
^ : 0.25	v : 0.23	w : 0.12	t : 0.09	u : 0.05	c : 0.05	x : 0.04	g : 0.02	d : 0.02	e : 0.02	a : 0.02	f : 0.01	y : 0.01	
^ : 0.25	v : 0.23	t : 0.15	u : 0.12	w : 0.12	x : 0.04	c : 0.04	e : 0.01	y : 0.01	
^ : 0.25	v : 0.23	t : 0.20	u : 0.12	w : 0.12	x : 0.04	y : 0.01	
^ : 0.25	v : 0.23	t : 0.20	u : 0.12	w : 0.12	x : 0.04	y : 0.01	
^ : 0.25	v : 0.23	t : 0.20	u : 0.12	w : 0.12	x : 0.04	y : 0.01	
^ : 0.25	v : 0.23	t : 0.20	u : 0.12	w : 0.12	x : 0.04	y : 0.01	
^ : 0.25	v : 0.23	t : 0.20	u : 0.12	w : 0.12	x : 0.04	y : 0.01	
^ : 0.25	v : 0.23	t : 0.20	u : 0.12	w : 0.12	x : 0.04	y : 0.01	
^ : 0.25	v : 0.23	t : 0.20	u : 0.12	w : 0.12	x : 0.04	y : 0.01	
^ : 0.25	v : 0.23	t : 0.20	u : 0.12	w : 0.12	x : 0.04	y : 0.01	
^ : 0.25	v : 0.23	t : 0.20	u : 0.12	w : 0.12	x : 0.04	y : 0.01	
^ : 0.25	v : 0.23	u : 0.12	w : 0.12	t : 0.11	x : 0.04	e : 0.04	b : 0.02	c : 0.01	a : 0.01	y : 0.01	
^ : 0.25	v : 0.23	w : 0.12	u : 0.06	e : 0.06	t : 0.05	x : 0.04	g : 0.04	h : 0.02	b : 0.02	c : 0.01	] : 0.01	a : 0.01	y : 0.01	
^ : 0.22	c : 0.18	f : 0.15	e : 0.11	w : 0.08	g : 0.05	d : 0.05	] : 0.04	h : 0.02	x : 0.02	a : 0.02	y : 0.01	
c : 0.25	^ : 0.19	f : 0.16	e : 0.15	g : 0.05	d : 0.05	] : 0.02	h : 0.02	b : 0.02	x : 0.01	3 : 0.01	y : 0.01	
c : 0.26	f : 0.18	^ : 0.18	e : 0.16	d : 0.06	g : 0.05	b : 0.04	h : 0.02	3 : 0.01	
f : 0.18	^ : 0.18	] : 0.12	e : 0.12	c : 0.09	d : 0.06	g : 0.05	3 : 0.04	b : 0.02	h : 0.02	2 : 0.02	6 : 0.02	: : 0.01	

#score	1369.0327305369092
#seq	72
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_transcript_m2_run1.txt

#BEAR
ddddddddvvvvvvvvvvvvvdddd	chr3:184052566-184052844(+)$1	278	90	115	22.1507
e]bbddddvvvvvvvvvvvvvdddd	chr21:45741546-45741806(+)$1	260	151	176	21.7551
:gggggggtttttttttttgggggg	chr9:123171405-123171677(-)$1	272	119	144	22.5777
ggg:dddduuuuuuuuuuuudddd:	chr21:34926518-34926787(+)$1	269	124	149	21.1139
ddd[cccuuuuuuuuuuuucccddd	chr3:184043541-184043840(+)$1	299	51	76	22.8461
cc[eeeeeuuuuuuuuuuuueeeee	chr9:35714471-35714677(-)$1	206	152	177	23.7212
cccccc[atttttttttttacccDD	chr1:33271982-33272206(-)$1	224	35	60	21.4029
fffff[bbtttttttttttbb]fff	chr19:2432313-2432597(-)$1	284	82	107	22.2100
hhh[ddddtttttttttttdddd44	chr5:140909081-140909307(-)$1	226	49	74	22.6445
========ttttttttttt======	chr14:31590551-31590811(-)$1	260	80	105	23.7623
ee[eeeeevvvvvvvvvvvvveeee	chr2:96968796-96969014(-)$1	218	183	208	23.1886
cc[dddduuuuuuuuuuuudddd]c	chr19:50285765-50286059(+)$1	294	106	131	22.9062
g[ddddbbtttttttttttbb]ddd	chr3:9780892-9781167(+)$1	275	21	46	22.4849
d[ffffffwwwwwwwwwwwwwwfff	chr12:6692159-6692372(-)$1	213	18	43	20.4951
cc"""cccuuuuuuuuuuuuccc33	chr11:62297255-62297500(-)$1	245	81	106	23.5818
[bb"""bbuuuuuuuuuuuubb333	chr16:70303420-70303632(-)$1	212	174	199	22.0544
GGeeeeevvvvvvvvvvvvveeeee	chr17:41345317-41345660(+)$1	343	268	293	22.4656
ffffffvvvvvvvvvvvvvffffff	chr7:98608987-98609245(+)$1	258	64	89	21.5547
gggggggwwwwwwwwwwwwwwgggg	chr6:31750422-31750684(-)$1	262	36	61	22.3641
========uuuuuuuuuuuu=====	chr1:52290857-52291066(-)$1	209	107	132	23.8720
iii[cccvvvvvvvvvvvvvcccii	chr17:26962208-26962457(-)$1	249	85	110	23.7600
a!!eeeeeuuuuuuuuuuuueeeee	chr19:11107081-11107321(+)$1	240	211	236	23.7240
hhhhhhhhvvvvvvvvvvvvvhhhh	chr2:96968814-96969057(-)$1	243	175	200	20.9169
eeeeeyyyyyyyyyyyyyyyyeeee	chr2:27461275-27461529(+)$1	254	91	116	20.8966
eeee!!bbtttttttttttbbeeee	chr1:19513661-19513893(-)$1	232	75	100	23.0138
dd[eeeeettttttttttteeeee]	chr5:71403198-71403485(+)$1	287	97	122	23.4010
ffffffwwwwwwwwwwwwwwfffff	chr1:154197500-154197760(+)$1	260	26	51	21.0309
::fffffftttttttttttffffff	chr9:35064062-35064341(-)$1	279	243	268	20.5356
ddd[ddddtttttttttttdddd]d	chr17:78290887-78291132(+)$1	245	181	206	22.9298
e"""ddddtttttttttttdddd22	chr16:3722654-3722917(-)$1	263	89	114	22.6370
!affffffuuuuuuuuuuuufffff	chr2:54876116-54876401(+)$1	285	62	87	22.4977
hhhhhhhhttttttttttthhhhhh	chr19:11145490-11145738(+)$1	248	41	66	20.8200
gggggggwwwwwwwwwwwwwwgggg	chr2:216973981-216974266(+)$1	285	75	100	22.3641
[dddd[bbtttttttttttbbdddd	chr17:57697161-57697385(+)$1	224	92	117	22.4072
[gggggggtttttttttttgggggg	chr9:35719026-35719264(-)$1	238	80	105	23.4938
d"""cccuuuuuuuuuuuucccddd	chr7:135261034-135261262(+)$1	228	96	121	22.9502
ddd[cccvvvvvvvvvvvvvccc]d	chr8:124369817-124370066(-)$1	249	206	231	23.3819
ccc[bbwwwwwwwwwwwwwwbbccc	chrX:53595552-53595767(-)$1	215	86	111	21.0170
ee!!ddddtttttttttttdddd]e	chr3:184043282-184043527(+)$1	245	11	36	23.3485
eee####attttttttttta4444e	chrX:53438896-53439154(-)$1	258	146	171	23.1484
f!!bb[bbtttttttttttbb]bb]	chr1:19403252-19403474(-)$1	222	37	62	21.7320
cc:eeeeeuuuuuuuuuuuueeeee	chr1:19443752-19443969(-)$1	217	131	156	22.5922
gggggggvvvvvvvvvvvvvggggg	chr9:134351463-134351701(+)$1	238	146	171	23.7324
ggggggguuuuuuuuuuuugggggg	chr1:16259084-16259357(+)$1	273	203	228	23.2520
FF:eeeeeuuuuuuuuuuuueeeee	chr17:7411644-7411891(+)$1	247	15	40	21.7764
gggggggwwwwwwwwwwwwwwgggg	chr1:19523535-19523743(-)$1	208	161	186	22.3641
eeeeewwwwwwwwwwwwwweeeeec	chr5:149772834-149773216(+)$1	382	201	226	20.9227
eeeeeeeeuuuuuuuuuuuueeeee	chr11:62484477-62484719(-)$1	242	108	133	23.4535
d####ccctttttttttttccc333	chrX:47062838-47063076(+)$1	238	192	217	23.2491
+++eeeeettttttttttteeeee3	chr17:57743869-57744104(+)$1	235	131	156	21.4600
:gggggggtttttttttttgggggg	chr12:6709295-6709535(-)$1	240	193	218	22.5777
bb[eeeeeuuuuuuuuuuuueeeee	chr19:18968028-18968362(+)$1	334	37	62	23.2014
gggg!!bbtttttttttttbb22gg	chr1:156104130-156104388(+)$1	258	114	139	22.5984
c[a[bb[attttttttttta]bb]a	chr14:102451923-102452146(+)$1	223	138	163	22.8257
b!!eeeeeuuuuuuuuuuuueeeee	chr17:7479857-7480112(+)$1	255	197	222	23.5459
gggggggvvvvvvvvvvvvvggggg	chr17:40039311-40039557(-)$1	246	3	28	23.7324
"eeeeevvvvvvvvvvvvveeeee4	chr5:71494746-71495002(+)$1	256	221	246	22.4305
eefffffftttttttttttffffff	chr2:152266813-152267056(+)$1	243	78	103	22.3352
ggddddvvvvvvvvvvvvvdddd]g	chr17:78350602-78350849(+)$1	247	77	102	22.3522
eeeyyyyyyyyyyyyyyyyeeeeed	chrX:153586785-153587013(-)$1	228	117	142	19.3997
cccdddduuuuuuuuuuuudddd]c	chr3:47883006-47883272(+)$1	266	183	208	22.7490
ccccyyyyyyyyyyyyyyyyccc]c	chr22:42059702-42059980(+)$1	278	180	205	20.6688
iiiiiiiivvvvvvvvvvvvviiii	chr11:71726340-71726570(-)$1	230	169	194	23.1242
:ddddcccuuuuuuuuuuuuccc]d	chr16:58573745-58573963(-)$1	218	168	193	22.3573

#otherMatches

#Seq PSSM
GUGGCUCCGUGAAGCAGAGGAGGAG	chr3:184052566-184052844(+)$1	278	90	115	22.1507
CUCCCAUGGACACACAGUAUACGUG	chr21:45741546-45741806(+)$1	260	151	176	21.7551
UCUCCAGGAAGACCGUGAGCCUGGA	chr9:123171405-123171677(-)$1	272	119	144	22.5777
UGGAGGAGAAAAAGAAGUACCUCCC	chr21:34926518-34926787(+)$1	269	124	149	21.1139
GCUAGGAUUUAUUCAUUAUUCCAGU	chr3:184043541-184043840(+)$1	299	51	76	22.8461
UCUAAGCUUCCAUCUCCCACAGUUU	chr9:35714471-35714677(-)$1	206	152	177	23.7212
CACAGCACGAUUCCAAGAAGGCUGG	chr1:33271982-33272206(-)$1	224	35	60	21.4029
UCUCUGGGGAACUGGAGAAUCAAGA	chr19:2432313-2432597(-)$1	284	82	107	22.2100
UUUUGGGUUCCUUCCGCAUGCCCUA	chr5:140909081-140909307(-)$1	226	49	74	22.6445
UUGGGAUUGUUUUAUUUUAGAUUCU	chr14:31590551-31590811(-)$1	260	80	105	23.7623
auccuuggaaucuucgaagugcuaa	chr2:96968796-96969014(-)$1	218	183	208	23.1886
AGCCGCAACCCCACCUUCAUGUGCC	chr19:50285765-50286059(+)$1	294	106	131	22.9062
UAUCUGCAAUGAUGGUGAGUGCCAG	chr3:9780892-9781167(+)$1	275	21	46	22.4849
GCCGGCCCCGCCCCCCACCCAUGGG	chr12:6692159-6692372(-)$1	213	18	43	20.4951
CAAAGUUGAUAUUAAUGCACCAGAU	chr11:62297255-62297500(-)$1	245	81	106	23.5818
UAUGAAACuuuucuuugugugugag	chr16:70303420-70303632(-)$1	212	174	199	22.0544
GAGCCCUGAUAACAUUGAAAAGGGC	chr17:41345317-41345660(+)$1	343	268	293	22.4656
GACUCACGCCCAACAUUUCUGAGUU	chr7:98608987-98609245(+)$1	258	64	89	21.5547
ACCUGGGCAUCCUGAUGUACACCCA	chr6:31750422-31750684(-)$1	262	36	61	22.3641
GGUAAGAUACUAAAUACAUCAUCUU	chr1:52290857-52291066(-)$1	209	107	132	23.8720
GCUGAGGACAAGUUCAUUACCCUGG	chr17:26962208-26962457(-)$1	249	85	110	23.7600
CUGUGUUCUUUUAAAAUUACGAACA	chr19:11107081-11107321(+)$1	240	211	236	23.7240
gugaaauauauauuaggucuuuauu	chr2:96968814-96969057(-)$1	243	175	200	20.9169
GUUCCUAAGCCAUGAUGACCUGGAG	chr2:27461275-27461529(+)$1	254	91	116	20.8966
CCCUUUGAUAUCAUUGCCUUCAGGG	chr1:19513661-19513893(-)$1	232	75	100	23.0138
CCUGCCGCAGUGGAGAGGAGCGGCC	chr5:71403198-71403485(+)$1	287	97	122	23.4010
AUUUAAUACCUAAUUUUCUUUUAAA	chr1:154197500-154197760(+)$1	260	26	51	21.0309
CUGUCCCAAUGUCUAAUCCUGGGAC	chr9:35064062-35064341(-)$1	279	243	268	20.5356
CUCACAAAGGUACCAAAAGUUUGGG	chr17:78290887-78291132(+)$1	245	181	206	22.9298
CCCCCAGAAACCGUCCAUGUUUGAU	chr16:3722654-3722917(-)$1	263	89	114	22.6370
ACCUUGCUGAAGAGAGAAGAGGCAA	chr2:54876116-54876401(+)$1	285	62	87	22.4977
UAGCGUGCCCCUGGUGCCUGCAUGC	chr19:11145490-11145738(+)$1	248	41	66	20.8200
AAGCGGCUCUUUCCGCUAUCUGCCG	chr2:216973981-216974266(+)$1	285	75	100	22.3641
UCAGCCGUUUCCGGAGUCUGCGCUG	chr17:57697161-57697385(+)$1	224	92	117	22.4072
GCUGCCUUGCUGGAGGACGAAGGCG	chr9:35719026-35719264(-)$1	238	80	105	23.4938
AGACGGGGAAAGACAUGGACCCUAG	chr7:135261034-135261262(+)$1	228	96	121	22.9502
AUUGUCUAAGUAAAUGGGUAGGAGA	chr8:124369817-124370066(-)$1	249	206	231	23.3819
CAGAGUACCUCACAGCUUAGACCUG	chrX:53595552-53595767(-)$1	215	86	111	21.0170
UCAGGGUCCCAAGACCAUUGACCAG	chr3:184043282-184043527(+)$1	245	11	36	23.3485
UGAAGAACGGAUGGAAGAAGAGAGU	chrX:53438896-53439154(-)$1	258	146	171	23.1484
GUAAGUCACCCACCUCUCUUGUCUC	chr1:19403252-19403474(-)$1	222	37	62	21.7320
GCAGUCACACCAUCAGCAAAGUGAC	chr1:19443752-19443969(-)$1	217	131	156	22.5922
ACUCCUCCGAUCACGCCAAUGAGGA	chr9:134351463-134351701(+)$1	238	146	171	23.7324
UCUGCCUCUGCUGCCUAUAAGGCAG	chr1:16259084-16259357(+)$1	273	203	228	23.2520
GGUGUGUCUGCCAAGAAUGUGACGC	chr17:7411644-7411891(+)$1	247	15	40	21.7764
UUCAGGAAACCAUGAAAAUCCUCCU	chr1:19523535-19523743(-)$1	208	161	186	22.3641
UCUGGCCGCCAAAGAUGACCCAGAU	chr5:149772834-149773216(+)$1	382	201	226	20.9227
GGGGAGCUGGAGAAGGAGGAAGCUC	chr11:62484477-62484719(-)$1	242	108	133	23.4535
ACAUGGACACCAUUGAGAAGUCAAA	chrX:47062838-47063076(+)$1	238	192	217	23.2491
CUGAGGUAUUUCAGUUUCUUACCUA	chr17:57743869-57744104(+)$1	235	131	156	21.4600
AGAAGGGUGGGACAGUAAAGCUCUU	chr12:6709295-6709535(-)$1	240	193	218	22.5777
AGUGUGUGUUGAGGCUGAUUCACAC	chr19:18968028-18968362(+)$1	334	37	62	23.2014
CGGCGGGUGGAUGCUGAGAACAGGC	chr1:156104130-156104388(+)$1	258	114	139	22.5984
UGAACCCCAAGAUAUGAAAGUGGCU	chr14:102451923-102452146(+)$1	223	138	163	22.8257
UGCACGCUUUCCAGUCUUUCAGCGU	chr17:7479857-7480112(+)$1	255	197	222	23.5459
UCUAUCCAGUUUUUACGUCAGGAUG	chr17:40039311-40039557(-)$1	246	3	28	23.7324
CUACCAAGACCCCUGAAGAUGGUGA	chr5:71494746-71495002(+)$1	256	221	246	22.4305
UCACUGGAUUUUCUCCUCUUCCGGU	chr2:152266813-152267056(+)$1	243	78	103	22.3352
AGCAUGCUUUUCUUCCAACCAUGCC	chr17:78350602-78350849(+)$1	247	77	102	22.3522
CACCCAGACCGUCAAUUAUGUGCCC	chrX:153586785-153587013(-)$1	228	117	142	19.3997
AGGUGAUUCAGAUUGCAACGUCAUC	chr3:47883006-47883272(+)$1	266	183	208	22.7490
CCAGUUAAAAUGUGUUUCUCCUGAG	chr22:42059702-42059980(+)$1	278	180	205	20.6688
CAGCCUUGAAGAGGAGAAGCGCAGG	chr11:71726340-71726570(-)$1	230	169	194	23.1242
ACAUGCCAUCCCACCAACUUUGGCC	chr16:58573745-58573963(-)$1	218	168	193	22.3573

#DB
((((((((.............))))	chr3:184052566-184052844(+)$1	1	90	115	22.1507
).))((((.............))))	chr21:45741546-45741806(+)$1	1	151	176	21.7551
.(((((((...........))))))	chr9:123171405-123171677(-)$1	1	119	144	22.5777
))).((((............)))).	chr21:34926518-34926787(+)$1	1	124	149	21.1139
(((.(((............))))))	chr3:184043541-184043840(+)$1	1	51	76	22.8461
((.(((((............)))))	chr9:35714471-35714677(-)$1	1	152	177	23.7212
)))(((.(...........))))))	chr1:33271982-33272206(-)$1	1	35	60	21.4029
(((((.((...........)).)))	chr19:2432313-2432597(-)$1	1	82	107	22.2100
(((.((((...........))))..	chr5:140909081-140909307(-)$1	1	49	74	22.6445
((((((((...........))))))	chr14:31590551-31590811(-)$1	1	80	105	23.7623
((.(((((.............))))	chr2:96968796-96969014(-)$1	1	183	208	23.1886
((.((((............)))).)	chr19:50285765-50286059(+)$1	1	106	131	22.9062
(.((((((...........)).)))	chr3:9780892-9781167(+)$1	1	21	46	22.4849
(.((((((..............)))	chr12:6692159-6692372(-)$1	1	18	43	20.4951
((...(((............)))..	chr11:62297255-62297500(-)$1	1	81	106	23.5818
.((...((............))...	chr16:70303420-70303632(-)$1	1	174	199	22.0544
))(((((.............)))))	chr17:41345317-41345660(+)$1	1	268	293	22.4656
((((((.............))))))	chr7:98608987-98609245(+)$1	1	64	89	21.5547
(((((((..............))))	chr6:31750422-31750684(-)$1	1	36	61	22.3641
((((((((............)))))	chr1:52290857-52291066(-)$1	1	107	132	23.8720
(((.(((.............)))))	chr17:26962208-26962457(-)$1	1	85	110	23.7600
(..(((((............)))))	chr19:11107081-11107321(+)$1	1	211	236	23.7240
((((((((.............))))	chr2:96968814-96969057(-)$1	1	175	200	20.9169
(((((................))))	chr2:27461275-27461529(+)$1	1	91	116	20.8966
((((..((...........))))))	chr1:19513661-19513893(-)$1	1	75	100	23.0138
((.(((((...........))))).	chr5:71403198-71403485(+)$1	1	97	122	23.4010
((((((..............)))))	chr1:154197500-154197760(+)$1	1	26	51	21.0309
..((((((...........))))))	chr9:35064062-35064341(-)$1	1	243	268	20.5356
(((.((((...........)))).)	chr17:78290887-78291132(+)$1	1	181	206	22.9298
(...((((...........))))..	chr16:3722654-3722917(-)$1	1	89	114	22.6370
.(((((((............)))))	chr2:54876116-54876401(+)$1	1	62	87	22.4977
((((((((...........))))))	chr19:11145490-11145738(+)$1	1	41	66	20.8200
(((((((..............))))	chr2:216973981-216974266(+)$1	1	75	100	22.3641
.((((.((...........))))))	chr17:57697161-57697385(+)$1	1	92	117	22.4072
.(((((((...........))))))	chr9:35719026-35719264(-)$1	1	80	105	23.4938
(...(((............))))))	chr7:135261034-135261262(+)$1	1	96	121	22.9502
(((.(((.............))).)	chr8:124369817-124370066(-)$1	1	206	231	23.3819
(((.((..............)))))	chrX:53595552-53595767(-)$1	1	86	111	21.0170
((..((((...........)))).)	chr3:184043282-184043527(+)$1	1	11	36	23.3485
(((....(...........)....)	chrX:53438896-53439154(-)$1	1	146	171	23.1484
(..((.((...........)).)).	chr1:19403252-19403474(-)$1	1	37	62	21.7320
)).(((((............)))))	chr1:19443752-19443969(-)$1	1	131	156	22.5922
(((((((.............)))))	chr9:134351463-134351701(+)$1	1	146	171	23.7324
(((((((............))))))	chr1:16259084-16259357(+)$1	1	203	228	23.2520
((.(((((............)))))	chr17:7411644-7411891(+)$1	1	15	40	21.7764
(((((((..............))))	chr1:19523535-19523743(-)$1	1	161	186	22.3641
(((((..............))))))	chr5:149772834-149773216(+)$1	1	201	226	20.9227
((((((((............)))))	chr11:62484477-62484719(-)$1	1	108	133	23.4535
(....(((...........)))...	chrX:47062838-47063076(+)$1	1	192	217	23.2491
...(((((...........))))).	chr17:57743869-57744104(+)$1	1	131	156	21.4600
.(((((((...........))))))	chr12:6709295-6709535(-)$1	1	193	218	22.5777
((.(((((............)))))	chr19:18968028-18968362(+)$1	1	37	62	23.2014
((((..((...........))..))	chr1:156104130-156104388(+)$1	1	114	139	22.5984
(.(.((.(...........).)).)	chr14:102451923-102452146(+)$1	1	138	163	22.8257
(..(((((............)))))	chr17:7479857-7480112(+)$1	1	197	222	23.5459
(((((((.............)))))	chr17:40039311-40039557(-)$1	1	3	28	23.7324
.(((((.............))))).	chr5:71494746-71495002(+)$1	1	221	246	22.4305
))((((((...........))))))	chr2:152266813-152267056(+)$1	1	78	103	22.3352
((((((.............)))).)	chr17:78350602-78350849(+)$1	1	77	102	22.3522
(((................))))))	chrX:153586785-153587013(-)$1	1	117	142	19.3997
(((((((............)))).)	chr3:47883006-47883272(+)$1	1	183	208	22.7490
((((................))).)	chr22:42059702-42059980(+)$1	1	180	205	20.6688
((((((((.............))))	chr11:71726340-71726570(-)$1	1	169	194	23.1242
.(((((((............))).)	chr16:58573745-58573963(-)$1	1	168	193	22.3573

#PSSM
e : 0.17	g : 0.15	c : 0.14	d : 0.12	: : 0.06	f : 0.06	h : 0.04	[ : 0.04	= : 0.03	i : 0.03	b : 0.03	G : 0.01	a : 0.01	! : 0.01	F : 0.01	+ : 0.01	" : 0.01	
g : 0.18	e : 0.15	c : 0.12	d : 0.10	f : 0.04	h : 0.04	[ : 0.04	! : 0.04	= : 0.03	b : 0.03	i : 0.03	" : 0.03	] : 0.01	G : 0.01	: : 0.01	a : 0.01	F : 0.01	# : 0.01	+ : 0.01	
g : 0.17	d : 0.12	e : 0.12	f : 0.10	[ : 0.07	c : 0.06	! : 0.06	h : 0.04	" : 0.04	b : 0.03	= : 0.03	i : 0.03	: : 0.03	# : 0.01	+ : 0.01	a : 0.01	
e : 0.23	g : 0.15	d : 0.10	[ : 0.10	f : 0.10	" : 0.06	b : 0.03	c : 0.03	= : 0.03	h : 0.03	# : 0.03	: : 0.01	! : 0.01	y : 0.01	i : 0.01	
e : 0.21	d : 0.20	g : 0.14	f : 0.10	c : 0.07	b : 0.04	= : 0.03	" : 0.03	h : 0.03	! : 0.03	# : 0.03	y : 0.03	i : 0.01	
e : 0.18	d : 0.17	g : 0.14	c : 0.12	f : 0.09	[ : 0.04	y : 0.04	= : 0.03	h : 0.03	! : 0.03	b : 0.03	" : 0.01	# : 0.01	w : 0.01	i : 0.01	
e : 0.17	d : 0.14	g : 0.14	c : 0.10	b : 0.10	f : 0.06	v : 0.04	y : 0.04	w : 0.04	[ : 0.03	= : 0.03	h : 0.03	# : 0.01	i : 0.01	
e : 0.15	v : 0.12	d : 0.10	b : 0.10	w : 0.09	u : 0.07	f : 0.06	g : 0.04	a : 0.04	c : 0.04	y : 0.04	= : 0.03	h : 0.03	i : 0.01	
t : 0.35	u : 0.28	v : 0.20	w : 0.10	y : 0.04	
t : 0.35	u : 0.28	v : 0.20	w : 0.10	y : 0.04	
t : 0.35	u : 0.28	v : 0.20	w : 0.10	y : 0.04	
t : 0.35	u : 0.28	v : 0.20	w : 0.10	y : 0.04	
t : 0.35	u : 0.28	v : 0.20	w : 0.10	y : 0.04	
t : 0.35	u : 0.28	v : 0.20	w : 0.10	y : 0.04	
t : 0.35	u : 0.28	v : 0.20	w : 0.10	y : 0.04	
t : 0.35	u : 0.28	v : 0.20	w : 0.10	y : 0.04	
t : 0.35	u : 0.28	v : 0.20	w : 0.10	y : 0.04	
t : 0.35	u : 0.28	v : 0.20	w : 0.10	y : 0.04	
t : 0.35	u : 0.28	v : 0.20	w : 0.10	y : 0.04	
u : 0.20	v : 0.15	d : 0.10	b : 0.09	w : 0.09	e : 0.07	g : 0.06	c : 0.04	a : 0.04	f : 0.04	y : 0.03	= : 0.01	h : 0.01	
e : 0.20	c : 0.14	d : 0.12	b : 0.12	g : 0.09	v : 0.07	f : 0.07	w : 0.06	= : 0.03	y : 0.01	h : 0.01	4 : 0.01	] : 0.01	
e : 0.25	d : 0.17	g : 0.14	c : 0.14	f : 0.07	] : 0.04	b : 0.04	= : 0.03	h : 0.03	w : 0.01	4 : 0.01	2 : 0.01	i : 0.01	
e : 0.25	d : 0.21	g : 0.14	c : 0.10	f : 0.10	= : 0.03	3 : 0.03	h : 0.03	b : 0.03	4 : 0.01	2 : 0.01	i : 0.01	
e : 0.25	g : 0.15	] : 0.14	d : 0.10	f : 0.10	3 : 0.04	4 : 0.03	= : 0.03	i : 0.03	h : 0.03	D : 0.01	2 : 0.01	c : 0.01	b : 0.01	
e : 0.20	g : 0.17	d : 0.15	f : 0.10	c : 0.07	3 : 0.06	4 : 0.03	= : 0.03	i : 0.03	h : 0.03	] : 0.03	: : 0.01	D : 0.01	2 : 0.01	a : 0.01	

#score	1435.8623511467904
#seq	64
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_CDS_m3_run1.txt

#BEAR
ddd!!cccqqqqqqqqcccddd	chr8:126010742-126011005(+)$1	263	43	65	14.7740
d"""ddddqqqqqqqqdddd]d	chr7:2284190-2284462(+)$1	272	203	225	14.3637
:gggggggqqqqqqqqgggggg	chr8:29931455-29931673(-)$1	218	56	78	14.4712
eeeeecccqqqqqqqqccc]ee	chr1:110948890-110949101(-)$1	211	125	147	15.2407
FFbb[cccqqqqqqqqcccbbf	chr3:139108285-139108516(-)$1	231	82	104	13.4291
fffff[bbqqqqqqqqbbffff	chr19:4037224-4037538(+)$1	314	33	55	13.5819
cc[eeeeeqqqqqqqqeeeee]	chr3:48646597-48646837(-)$1	240	149	171	15.1444
eeeee[bbqqqqqqqqbb]eee	chr13:115000355-115000702(+)$1	347	289	311	14.0903
gggggcccqqqqqqqqccc333	chr6:10749754-10749969(+)$1	215	98	120	15.4951
iii!!cccqqqqqqqqccc333	chr1:19949863-19950139(+)$1	276	47	69	15.5691
iiiiiiiiqqqqqqqqiiiiii	chr12:93862933-93863240(+)$1	307	180	202	14.7671
ddddd[bbqqqqqqqqbb]ddd	chr7:129843715-129843988(-)$1	273	127	149	13.2197
:gggggggqqqqqqqqgggggg	chr15:55681462-55681732(-)$1	270	166	188	14.4712
:ccc[cccqqqqqqqqccc22c	chr22:32340614-32340832(+)$1	218	61	83	14.1082
$$$eeeeeqqqqqqqqeeeee2	chr19:1592442-1592778(-)$1	336	31	53	14.5744
dd"""a[aqqqqqqqqa]a444	chr4:26322477-26322784(+)$1	307	38	60	14.6904
bbffffffqqqqqqqqffffff	chr16:30092479-30092733(+)$1	254	136	158	14.1774
::a[ddddqqqqqqqqdddd]a	chr19:39138225-39138529(+)$1	304	89	111	12.9943
!bb[ddddqqqqqqqqdddd]b	chr1:112233855-112234085(+)$1	230	158	180	13.9616
gggggg[aqqqqqqqqaggggg	chr15:79170454-79170702(+)$1	248	139	161	15.2445
dgggggggqqqqqqqqgggggg	chr7:150066658-150066926(+)$1	268	108	130	15.0865
dddd[a[aqqqqqqqqa]a]dd	chr7:148718006-148718320(-)$1	314	269	291	14.2952
ee!!ddddqqqqqqqqddddee	chr16:84164752-84165033(-)$1	281	215	237	14.5409
eeeeecccqqqqqqqqccc]ee	chr1:110948862-110949090(-)$1	228	114	136	15.2407
eeeeeeeeqqqqqqqqeeeee]	chr7:100283780-100284052(-)$1	272	101	123	14.8740
ebb!!cccqqqqqqqqccc444	chr16:75498330-75498611(-)$1	281	84	106	14.9934
#gggggggqqqqqqqqgggggg	chrX:20284609-20284862(-)$1	253	135	157	15.2073
!eeeeebbqqqqqqqqbb]eee	chr9:100818962-100819254(+)$1	292	88	110	14.2512
B:ffffffqqqqqqqqffffff	chr3:33114051-33114306(-)$1	255	15	37	13.0899
::ffffffqqqqqqqqffffff	chr14:77924354-77924698(+)$1	344	49	71	13.0516
dd[eeeeeqqqqqqqqeeeee2	chr7:156433037-156433284(-)$1	247	32	54	14.8366
eebb[cccqqqqqqqqccc]bb	chr12:96252735-96252955(+)$1	220	74	96	14.1967
###eeeeeqqqqqqqqeeeee4	chr7:56136074-56136357(+)$1	283	34	56	15.2206
:eeeeebbqqqqqqqqbb]eee	chr5:172421677-172421894(+)$1	217	132	154	13.4547
egggggggqqqqqqqqgggggg	chr3:48646493-48646797(-)$1	304	42	64	15.1188
fgggggggqqqqqqqqgggggg	chr1:234509875-234510173(+)$1	298	12	34	14.9904
e[dddd[aqqqqqqqqa]dddd	chr16:87902807-87903065(-)$1	258	42	64	14.2033
g:ffffffqqqqqqqqffffff	chrX:154448359-154448651(+)$1	292	95	117	13.7049
c[a[ddddqqqqqqqqddddac	chr7:23338931-23339323(+)$1	392	221	243	14.3506
BBffffffqqqqqqqqffffff	chr7:128097173-128097533(+)$1	360	88	110	13.1442
[ccc[cccqqqqqqqqccc]cc	chr14:75530066-75530321(-)$1	255	84	106	15.2684
[ccc[cccqqqqqqqqccc]cc	chr12:22199105-22199464(+)$1	359	11	33	15.2684
bb[eeeeeqqqqqqqqeeeee]	chr1:110950106-110950397(-)$1	291	8	30	14.8927
ddd[eeeeeqqqqqqqqeeeee	chr17:49232910-49233195(+)$1	285	218	240	12.2425
c:ffffffqqqqqqqqffffff	chr19:2737149-2737448(-)$1	299	230	252	13.7133
ccceeeeeqqqqqqqqeeeee2	chr22:50873157-50873540(+)$1	383	124	146	14.8314
bb!!ddddqqqqqqqqdddd]b	chr1:233749793-233750159(+)$1	366	308	330	14.0674
fffbb!!aqqqqqqqqa22bbG	chr5:179132578-179132791(+)$1	213	127	149	12.1147
e!!eeeeeqqqqqqqqeeeeee	chr16:2867727-2868036(+)$1	309	82	104	15.1893
gggggg[aqqqqqqqqa]gggg	chr14:53150492-53150726(-)$1	234	134	156	15.1916
####ddddqqqqqqqqdddd33	chr12:122186016-122186340(+)$1	324	256	278	14.6781
$$$$$cccqqqqqqqqcccddd	chr8:11710803-11711089(-)$1	286	228	250	14.1046
eeee[cccqqqqqqqqccc]ee	chr4:183836536-183836829(-)$1	293	152	174	15.3097
!!ffffffqqqqqqqqffffff	chr22:18232770-18233023(-)$1	253	210	232	14.6969
$$$eeeeeqqqqqqqqeeeee7	chr7:66406838-66407112(+)$1	274	129	151	14.1728
d!!ccc[aqqqqqqqqa]ccc3	chr11:205852-206146(-)$1	294	54	76	15.1728

#otherMatches

#Seq PSSM
GGUUACUCUGGUUACUGGGGCC	chr8:126010742-126011005(+)$1	263	43	65	14.7740
GCUUUCCCagggcacagggauu	chr7:2284190-2284462(+)$1	272	203	225	14.3637
UGACACGAUACUUACUUUGUGU	chr8:29931455-29931673(-)$1	218	56	78	14.4712
GUCCUGUGCACAGAUUCACAAG	chr1:110948890-110949101(-)$1	211	125	147	15.2407
CCGGUAACAAACGAGGGUUCCC	chr3:139108285-139108516(-)$1	231	82	104	13.4291
CUCUUGCAGAGAGAAGUGGGGA	chr19:4037224-4037538(+)$1	314	33	55	13.5819
UCAGGCGCUCCAGUUCGUGCCG	chr3:48646597-48646837(-)$1	240	149	171	15.1444
CGCCGGGUCUUUUUCCGCGCGG	chr13:115000355-115000702(+)$1	347	289	311	14.0903
AGAGUGCCUUUGCAUUGGUUUG	chr6:10749754-10749969(+)$1	215	98	120	15.4951
GAGCUUUAUCUUCUCUUAAUAA	chr1:19949863-19950139(+)$1	276	47	69	15.5691
AUUUAUUUCCAGUCCAAAGUAA	chr12:93862933-93863240(+)$1	307	180	202	14.7671
CUGGGGACUCCUAAAUGUAUCU	chr7:129843715-129843988(-)$1	273	127	149	13.2197
UGAGGUAUGAUAUUUAAUACUU	chr15:55681462-55681732(-)$1	270	166	188	14.4712
AGCCAGCGGUGUGAGGCGCGAG	chr22:32340614-32340832(+)$1	218	61	83	14.1082
ACAGCCGCGGCAAGUggcggcg	chr19:1592442-1592778(-)$1	336	31	53	14.5744
GCGAGGGGAAAGGGAGCGCGGG	chr4:26322477-26322784(+)$1	307	38	60	14.6904
GGACUCGCCAGUCACAGUGAGU	chr16:30092479-30092733(+)$1	254	136	158	14.1774
ggcggcucgggcagaggggcgg	chr19:39138225-39138529(+)$1	304	89	111	12.9943
CAGGAGGCGUUGGGAAGUCUGC	chr1:112233855-112234085(+)$1	230	158	180	13.9616
AAGCAAAGGUAUGAAACUUGUU	chr15:79170454-79170702(+)$1	248	139	161	15.2445
UGGCCUCUCUGCAGUCAGAGGU	chr7:150066658-150066926(+)$1	268	108	130	15.0865
CCGCGUUCUAAUUUCUGCAGGU	chr7:148718006-148718320(-)$1	314	269	291	14.2952
AGCAUCACUGUCAUCUGUGACU	chr16:84164752-84165033(-)$1	281	215	237	14.5409
GUCCUGUGCACAGAUUCACAAG	chr1:110948862-110949090(-)$1	228	114	136	15.2407
GGGGAGGGGGAGGCAGCUCUCA	chr7:100283780-100284052(-)$1	272	101	123	14.8740
CUCAUUUCUCUGUGGUGAAUGG	chr16:75498330-75498611(-)$1	281	84	106	14.9934
CCCGUGGCAGAAGAUGGCUGUG	chrX:20284609-20284862(-)$1	253	135	157	15.2073
CCCAGACUGGUAGUGAGGCUUU	chr9:100818962-100819254(+)$1	292	88	110	14.2512
CAGAGAGUCACUUGCUACUCUC	chr3:33114051-33114306(-)$1	255	15	37	13.0899
AAGCAAGCCAGGAGGUGCUUGC	chr14:77924354-77924698(+)$1	344	49	71	13.0516
ACGGCGUCAGCGUCUAGACGCA	chr7:156433037-156433284(-)$1	247	32	54	14.8366
UGGUCGGCAGAGAGUAGCCUGC	chr12:96252735-96252955(+)$1	220	74	96	14.1967
UCCAAAUAUUACCACUUGUUUU	chr7:56136074-56136357(+)$1	283	34	56	15.2206
UUUGCUGCUAUCUCUUGUAAGU	chr5:172421677-172421894(+)$1	217	132	154	13.4547
GCGGCUGUUCCCUUCCACAGCC	chr3:48646493-48646797(-)$1	304	42	64	15.1188
AGAGGAGAUUGACGGUUUUCCU	chr1:234509875-234510173(+)$1	298	12	34	14.9904
GGGUGCGGGCCCGAAGCGGCGC	chr16:87902807-87903065(-)$1	258	42	64	14.2033
UAAAGGAAGAUGUAGAUUCCUU	chrX:154448359-154448651(+)$1	292	95	117	13.7049
UGCACAGCGAGCCUGGGCUGGA	chr7:23338931-23339323(+)$1	392	221	243	14.3506
AGGCCUUUCAGAAGGAGAAGGC	chr7:128097173-128097533(+)$1	360	88	110	13.1442
UGAUAUCAGUGGAUUAUGAAAU	chr14:75530066-75530321(-)$1	255	84	106	15.2684
ggcggggcgagggacggccgcg	chr12:22199105-22199464(+)$1	359	11	33	15.2684
GAACGCGGACGUUGCACCGUGA	chr1:110950106-110950397(-)$1	291	8	30	14.8927
GAAAUUCAUGCAAGUAAGUGGA	chr17:49232910-49233195(+)$1	285	218	240	12.2425
UGGGCGUGUUCUUCUUCAUGCU	chr19:2737149-2737448(-)$1	299	230	252	13.7133
GGGCACUUGCUCUCCGAAGUGA	chr22:50873157-50873540(+)$1	383	124	146	14.8314
GCUUCUUGGAGGAGCACGAGUG	chr1:233749793-233750159(+)$1	366	308	330	14.0674
uauguuacuggugcuuggaacu	chr5:179132578-179132791(+)$1	213	127	149	12.1147
GGCCGACGGGUCAUCACGUCGC	chr16:2867727-2868036(+)$1	309	82	104	15.1893
GUUGAAACCAUUGAUAGAUUUA	chr14:53150492-53150726(-)$1	234	134	156	15.1916
AGCAGAUGGCAGCGAACAUCAA	chr12:122186016-122186340(+)$1	324	256	278	14.6781
AACAAACGGAAUACCACGUGGC	chr8:11710803-11711089(-)$1	286	228	250	14.1046
GCCAGAGUAUUUUAUGGCUGUG	chr4:183836536-183836829(-)$1	293	152	174	15.3097
CCUGCGUGUCCCCCACCACGCA	chr22:18232770-18233023(-)$1	253	210	232	14.6969
ACUUCUUCAAAAUCAAGGAGAU	chr7:66406838-66407112(+)$1	274	129	151	14.1728
GGCCGUGCUCACCGAUGGAUGC	chr11:205852-206146(-)$1	294	54	76	15.1728

#DB
(((..(((........))))))	chr8:126010742-126011005(+)$1	1	43	65	14.7740
(...((((........)))).)	chr7:2284190-2284462(+)$1	1	203	225	14.3637
.(((((((........))))))	chr8:29931455-29931673(-)$1	1	56	78	14.4712
((((((((........))).))	chr1:110948890-110949101(-)$1	1	125	147	15.2407
((((.(((........)))))(	chr3:139108285-139108516(-)$1	1	82	104	13.4291
(((((.((........))))))	chr19:4037224-4037538(+)$1	1	33	55	13.5819
((.(((((........))))).	chr3:48646597-48646837(-)$1	1	149	171	15.1444
(((((.((........)).)))	chr13:115000355-115000702(+)$1	1	289	311	14.0903
((((((((........)))...	chr6:10749754-10749969(+)$1	1	98	120	15.4951
(((..(((........)))...	chr1:19949863-19950139(+)$1	1	47	69	15.5691
((((((((........))))))	chr12:93862933-93863240(+)$1	1	180	202	14.7671
(((((.((........)).)))	chr7:129843715-129843988(-)$1	1	127	149	13.2197
.(((((((........))))))	chr15:55681462-55681732(-)$1	1	166	188	14.4712
.(((.(((........)))..)	chr22:32340614-32340832(+)$1	1	61	83	14.1082
...(((((........))))).	chr19:1592442-1592778(-)$1	1	31	53	14.5744
((...(.(........).)...	chr4:26322477-26322784(+)$1	1	38	60	14.6904
((((((((........))))))	chr16:30092479-30092733(+)$1	1	136	158	14.1774
..(.((((........)))).)	chr19:39138225-39138529(+)$1	1	89	111	12.9943
.((.((((........)))).)	chr1:112233855-112234085(+)$1	1	158	180	13.9616
((((((.(........))))))	chr15:79170454-79170702(+)$1	1	139	161	15.2445
((((((((........))))))	chr7:150066658-150066926(+)$1	1	108	130	15.0865
((((.(.(........).).))	chr7:148718006-148718320(-)$1	1	269	291	14.2952
((..((((........))))))	chr16:84164752-84165033(-)$1	1	215	237	14.5409
((((((((........))).))	chr1:110948862-110949090(-)$1	1	114	136	15.2407
((((((((........))))).	chr7:100283780-100284052(-)$1	1	101	123	14.8740
(((..(((........)))...	chr16:75498330-75498611(-)$1	1	84	106	14.9934
.(((((((........))))))	chrX:20284609-20284862(-)$1	1	135	157	15.2073
.(((((((........)).)))	chr9:100818962-100819254(+)$1	1	88	110	14.2512
(.((((((........))))))	chr3:33114051-33114306(-)$1	1	15	37	13.0899
..((((((........))))))	chr14:77924354-77924698(+)$1	1	49	71	13.0516
((.(((((........))))).	chr7:156433037-156433284(-)$1	1	32	54	14.8366
))((.(((........))).))	chr12:96252735-96252955(+)$1	1	74	96	14.1967
...(((((........))))).	chr7:56136074-56136357(+)$1	1	34	56	15.2206
.(((((((........)).)))	chr5:172421677-172421894(+)$1	1	132	154	13.4547
)(((((((........))))))	chr3:48646493-48646797(-)$1	1	42	64	15.1188
((((((((........))))))	chr1:234509875-234510173(+)$1	1	12	34	14.9904
(.((((.(........).))))	chr16:87902807-87903065(-)$1	1	42	64	14.2033
).((((((........))))))	chrX:154448359-154448651(+)$1	1	95	117	13.7049
(.(.((((........))))))	chr7:23338931-23339323(+)$1	1	221	243	14.3506
((((((((........))))))	chr7:128097173-128097533(+)$1	1	88	110	13.1442
.(((.(((........))).))	chr14:75530066-75530321(-)$1	1	84	106	15.2684
.(((.(((........))).))	chr12:22199105-22199464(+)$1	1	11	33	15.2684
((.(((((........))))).	chr1:110950106-110950397(-)$1	1	8	30	14.8927
(((.(((((........)))))	chr17:49232910-49233195(+)$1	1	218	240	12.2425
).((((((........))))))	chr19:2737149-2737448(-)$1	1	230	252	13.7133
((((((((........))))).	chr22:50873157-50873540(+)$1	1	124	146	14.8314
((..((((........)))).)	chr1:233749793-233750159(+)$1	1	308	330	14.0674
)))((..(........)..)))	chr5:179132578-179132791(+)$1	1	127	149	12.1147
(..(((((........))))))	chr16:2867727-2868036(+)$1	1	82	104	15.1893
((((((.(........).))))	chr14:53150492-53150726(-)$1	1	134	156	15.1916
....((((........))))..	chr12:122186016-122186340(+)$1	1	256	278	14.6781
.....(((........))))))	chr8:11710803-11711089(-)$1	1	228	250	14.1046
((((.(((........))).))	chr4:183836536-183836829(-)$1	1	152	174	15.3097
..((((((........))))))	chr22:18232770-18233023(-)$1	1	210	232	14.6969
...(((((........))))).	chr7:66406838-66407112(+)$1	1	129	151	14.1728
(..(((.(........).))).	chr11:205852-206146(-)$1	1	54	76	15.1728

#PSSM
e : 0.19	d : 0.16	: : 0.10	c : 0.07	g : 0.07	f : 0.05	$ : 0.05	b : 0.05	! : 0.05	# : 0.05	i : 0.03	B : 0.03	[ : 0.03	F : 0.01	
g : 0.16	e : 0.16	d : 0.10	c : 0.08	b : 0.08	: : 0.08	$ : 0.05	! : 0.05	f : 0.03	i : 0.03	# : 0.03	[ : 0.03	" : 0.01	F : 0.01	B : 0.01	
g : 0.16	f : 0.16	e : 0.12	d : 0.08	b : 0.07	c : 0.07	! : 0.07	[ : 0.05	$ : 0.05	" : 0.03	i : 0.03	a : 0.03	# : 0.03	
e : 0.26	g : 0.16	f : 0.14	! : 0.08	c : 0.07	[ : 0.07	b : 0.05	d : 0.05	" : 0.03	i : 0.01	# : 0.01	$ : 0.01	
e : 0.26	d : 0.16	g : 0.16	f : 0.14	[ : 0.12	! : 0.05	i : 0.01	" : 0.01	b : 0.01	$ : 0.01	c : 0.01	
c : 0.24	e : 0.21	d : 0.14	g : 0.14	f : 0.12	[ : 0.05	a : 0.03	i : 0.01	! : 0.01	
c : 0.23	e : 0.17	d : 0.12	f : 0.12	g : 0.10	[ : 0.10	b : 0.08	i : 0.01	! : 0.01	
c : 0.23	e : 0.17	d : 0.12	a : 0.12	f : 0.12	g : 0.10	b : 0.08	i : 0.01	
q : 0.98	e : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.23	e : 0.16	d : 0.12	a : 0.12	f : 0.12	g : 0.10	b : 0.08	i : 0.01	q : 0.01	
c : 0.23	e : 0.17	d : 0.12	g : 0.12	f : 0.12	b : 0.08	] : 0.08	i : 0.01	2 : 0.01	
c : 0.24	e : 0.17	d : 0.14	g : 0.14	f : 0.14	] : 0.07	a : 0.03	i : 0.01	2 : 0.01	
e : 0.23	d : 0.19	g : 0.14	f : 0.14	] : 0.12	b : 0.03	3 : 0.03	4 : 0.03	i : 0.01	2 : 0.01	c : 0.01	
e : 0.30	g : 0.14	f : 0.14	d : 0.08	] : 0.07	b : 0.05	3 : 0.05	c : 0.05	4 : 0.03	i : 0.01	2 : 0.01	a : 0.01	
e : 0.16	f : 0.16	g : 0.14	d : 0.10	3 : 0.07	c : 0.07	] : 0.05	2 : 0.05	4 : 0.05	b : 0.05	i : 0.01	a : 0.01	G : 0.01	7 : 0.01	

#score	807.136931721406
#seq	56
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_transcript_m1_run1.txt

#BEAR
:ccc[ccc[cccccccccmmmmccc]ccc]ccc22cccc	chr16:85822378-85822690(-)$1	312	58	97	10.8562
fff"""a[ccc!!ccc[cccooooooccc]ccc]ccc]a	chr18:48586217-48586510(+)$1	293	81	120	14.6213
)))cccccc[eeeee[ddddllldddd22eeeeeccc]c	chr16:313696-313959(+)$1	263	174	213	11.8595
hhhhhhhh[ccc####cccmmmmccc4444ccc]hhhhh	chr6:41904656-41904885(-)$1	229	165	204	11.8884
[ffffff[============lll============22ff	chr12:9559724-9560018(-)$1	294	107	146	14.8507
gggg!!bb[a[dddd[cccmmmmcccdddd333a]bb33	chr10:102108212-102108465(+)$1	253	122	161	12.6216
%%a[iiiiiiiiiccc[cccmmmmccc22ccc]iiiiii	chr11:118365042-118365347(+)$1	305	223	262	13.9217
gg!!bb####ffffff[cccmmmmccc22ffffff333b	chr4:57307960-57308231(+)$1	271	122	161	13.1331
!eeeee"""dddd!!cccooooooccc22dddd]eeeee	chr8:95878444-95878680(+)$1	236	105	144	12.7804
$$ccc[bb"""ccc!!ddddllldddd333ccc333bbc	chrX:47058896-47059167(+)$1	271	70	109	14.7295
ggggggccc[dddd!!ddddllldddd333ddddccc44	chr16:50346675-50346934(+)$1	259	154	193	14.2996
ddd####=============lll=============444	chr18:9117774-9118014(+)$1	240	30	69	16.4339
c[ccc[dddd!!ccc!!ccclllccc]ccc22dddd]cc	chr17:61841950-61842226(-)$1	276	178	217	13.1961
eeeebb!!ccc[ccc!!ccclllccc22ccc22ccc22b	chr6:42641824-42642080(+)$1	256	140	179	13.4713
ccc:bb[ggggggg!!ddddllldddd]ggggggg]bb:	chr1:93805879-93806125(-)$1	246	136	175	11.4238
c[ffffff!!bb[ccc[aooooooaccc]bbffffffcc	chr19:807992-808221(+)$1	229	83	122	12.0669
$$$$$eeeee[a[a!!cccooooooccc22a]a]eeeee	chr7:97935600-97935835(-)$1	235	155	194	12.9617
eeee[ccc[a[gggggggooooooggggggga]ccc]ee	chr7:97816199-97816489(+)$1	290	159	198	13.6910
hhh[ccc"""ccc!!ddddmmmmdddd]ccc333ccc]h	chr9:19082730-19082980(-)$1	250	7	46	13.4953
cc!!ggggggg[gggggggmmmmggggggg]ggggggg2	chr11:118899781-118900046(-)$1	265	163	202	13.2659
c####ccc$$$$$gggggggoooooogggggggccc333	chr19:50366025-50366281(-)$1	256	159	198	14.4501
m==========eeeee[ccclllccc22eeeee:ccc!!	chr6:111329237-111329497(+)$1	260	114	153	12.3153
[eeeee"""===========mmmm===========22ee	chrX:118708825-118709090(+)$1	265	214	253	14.0715
c"""dddd[a!!eeeeeooooooeeeee22a333dddd3	chr6:39163500-39163756(-)$1	256	55	94	12.4854
cc"""ccc[bb"""bb[bblllbbbb333bbcccccc22	chr1:1244912-1245164(+)$1	252	155	194	12.1613
ccc!!ccc####eeeee[bblllbb]eeeee333ccc22	chr21:45496534-45496780(+)$1	246	14	53	13.4922
======bb[ffffff[cccooooooccc]ffffff333b	chr14:103987949-103988174(-)$1	225	174	213	13.6241
iiiiiiiii[bb[gggggggooooooggggggg]bb]ii	chr1:17748968-17749238(-)$1	270	182	221	13.9342
cc[ccc[gggggggccc[ammmma]ccc22ggggggg]c	chr11:62622705-62622997(-)$1	292	141	180	13.6979
e####ccc####ccc[ddddnnnnndddd]ccc4444cc	chr17:45736148-45736380(+)$1	232	98	137	13.0581
::iiiiiiiii####eeeeellleeeee22iiiiiiiii	chr12:69653828-69654115(+)$1	287	166	205	12.2906
fgggggggggggggg[ddddllldddd333ggggggg99	chr20:39721118-39721372(+)$1	254	173	212	13.6902
[bb[ccc"""gggggggccclllccc22gggggggccc]	chr17:17129354-17129618(-)$1	264	204	243	15.4260
========[dddd[bb[ccclllcccbb22dddd=====	chr1:67395963-67396242(+)$1	279	19	58	14.1590
b!!ccc####bb[gggggggmmmmggggggg]bbccc22	chr22:19968569-19968840(-)$1	271	219	258	12.5480
b!!a[eeeee!!ccc!!ccclllccc22ccc22eeeee]	chr1:11796195-11796434(+)$1	239	30	69	13.6537
============"""cccnnnnnccc4444=========	chr16:21964676-21964988(+)$1	312	90	129	15.1146
iiiiiiii[eeeee####bblllbb4444eeeee]iiii	chr5:154179504-154179741(+)$1	237	68	107	13.3723
iiiiiiii####ccc!!cccoooooocccccc22iiiii	chr15:50861947-50862194(-)$1	247	17	56	15.3989
======$$$$$ffffffooooooffffff==========	chr1:25569983-25570239(-)$1	256	26	65	12.7572
==[eeeee[ggggggg!!bbnnnnnbb22ggggggg444	chr15:101826855-101827130(-)$1	275	82	121	12.4324
"""dddd!!===========oooooo===========22	chr8:38099787-38100113(+)$1	326	41	80	15.4175
ggg!!ccc[ggggggg[ccclllcccggggggg]ccc]g	chr17:61900954-61901222(-)$1	268	153	192	16.4899
fffffeeeee"""ccc[cccoooooocccccc333eeee	chr16:3334192-3334444(+)$1	252	121	160	12.3043
==================bbmmmmbb]============	chr5:137708427-137708673(+)$1	246	166	205	14.8627
ddd[ccc[a[ffffffaooooooa]ffffff]a]ccc]d	chr2:131126021-131126282(+)$1	261	5	44	11.7475
fff"""bb!!dddd[eeeeellleeeee]dddd]bb22f	chr2:71623269-71623552(+)$1	283	136	175	11.6745
c[ggggggg[bbccc[ddddnnnnndddd]ccc]bb]gg	chr22:39708883-39709141(-)$1	258	24	63	11.8329
e[a[dddd[dddd"""ddddmmmmdddd333dddd333d	chr8:6566349-6566626(+)$1	277	54	93	12.1508
ggg$$$$$dddd!!cccooooooccc333ddddgggggg	chr9:123232067-123232433(-)$1	366	274	313	12.7834
!!dddd[a[dddd[a[ddddllldddd]adddda]dddd	chr2:220402535-220402792(+)$1	257	44	83	11.9372
e####iiiiiiiii!!ddddllldddd333iiiiiiiii	chr22:21349244-21349482(+)$1	238	145	184	16.6023
ccc"""===========mmmm===========22cccii	chr16:47162068-47162352(-)$1	284	157	196	13.3260
gggg!!bb[ggggggg[bbmmmmbb]ggggggg]bbggg	chr9:37487870-37488157(+)$1	287	101	140	12.5579

#otherMatches

#Seq PSSM
AGCUACGUGAUUGCUGGUUAUUAUCAAGCUAAUGAGCGA	chr16:85822378-85822690(-)$1	312	58	97	10.8562
CAAAAUUGAUUUCCUGUAUUUAGAUUGAUUUAGUGGUGA	chr18:48586217-48586510(+)$1	293	81	120	14.6213
GUCAGAGCUGCUGAGAAGGUUCUGCCUCCCUCAGAGCAU	chr16:313696-313959(+)$1	263	174	213	11.8595
ugggaacagaaccccagucucuuggcccuaguuguguuc	chr6:41904656-41904885(-)$1	229	165	204	11.8884
uccuccaggugGGUCCUAAGGAUCUUAGGAUCCGCAAUG	chr12:9559724-9560018(-)$1	294	107	146	14.8507
CUUUGAAGUGUGCUGUGCUGGAGAGUCAGCUUUCCCUGA	chr10:102108212-102108465(+)$1	253	122	161	12.6216
GGUGAGGUUGCCAGAGUGGAUGGAUCUUUCUCUUGGUGG	chr11:118365042-118365347(+)$1	305	223	262	13.9217
CUUUCAUGUGAAGUUGGCAUUAAUAUGAACAACUUGUUU	chr4:57307960-57308231(+)$1	271	122	161	13.1331
uugaucugucacccaagcuggagugcugaggugugauug	chr8:95878444-95878680(+)$1	236	105	144	12.7804
CUGCCUACACUGGACCCCUCGUUGAGGACUUCCUUAGUG	chrX:47058896-47059167(+)$1	271	70	109	14.7295
CUGUGUCAUGUUUGCCUCCGUGCCGGACUUCAAAGUGUU	chr16:50346675-50346934(+)$1	259	154	193	14.2996
UACUAAACUUUCUUAAAAUUUUAAAUUUUAGGGAAGACA	chr18:9117774-9118014(+)$1	240	30	69	16.4339
UCAAUCCCAGAAAUAAAAUUAAUGAUGUAUAGCUGGUGU	chr17:61841950-61842226(-)$1	276	178	217	13.1961
UCAUACUAUGUAACUUUACCUUAGGUUUGGUGAGCAGUG	chr6:42641824-42642080(+)$1	256	140	179	13.4713
AGAUGAUAAGUUUAAAUUGUGAUGCAAAUAAAUUUUUCU	chr1:93805879-93806125(-)$1	246	136	175	11.4238
AUGGUUUAUCGCCCUGCAUGCUUUUCAGAGUUAGACCUG	chr19:807992-808221(+)$1	229	83	122	12.0669
CAUCUAGCUGUGUCGCAGGCCCUGCCCUAAGCCUCAGCU	chr7:97935600-97935835(-)$1	235	155	194	12.9617
AACUUCUUCCUCUUUGAGUACUUCCUUAAAGGAAAGUAG	chr7:97816199-97816489(+)$1	290	159	198	13.6910
UUCGGUCCUUAGUCUUGUUAACCAAUAUGCUUUAGAUGG	chr9:19082730-19082980(-)$1	250	7	46	13.4953
CAGACACACUGGGUGUUUGUGUACAGGCAUGUGGUGUGG	chr11:118899781-118900046(-)$1	265	163	202	13.2659
GAGGACAUGAAAGGUCGGGGGAUGAUUCCUGAUGUGGGG	chr19:50366025-50366281(-)$1	256	159	198	14.4501
AGUAUUUAUUAUCUUCAGGGUAGCUCAGGAAGACAGUCU	chr6:111329237-111329497(+)$1	260	114	153	12.3153
AGGGGAAAAUGUUUGGGUCUGGCUGGGCCUAGGCGCCUC	chrX:118708825-118709090(+)$1	265	214	253	14.0715
GAACUGGCCCAAUGCAAUGAUUUUUGCAGCGACCGUCAU	chr6:39163500-39163756(-)$1	256	55	94	12.4854
GAUAUGGUCGCCAUGCAGGAAGCCGCCCAGCACCUCCUC	chr1:1244912-1245164(+)$1	252	155	194	12.1613
CCUGUCUCUAGAAGGCUUUGCUACAUGGCCUGUUGAGUU	chr21:45496534-45496780(+)$1	246	14	53	13.4922
GGAGGCCCAGCCCCGCGCCCACAGCGGCCUGGGGCCCAG	chr14:103987949-103988174(-)$1	225	174	213	13.6241
GGCUUCUUGAGGGCAUUGGGAGCCUCCCCAGUGGCCAUA	chr1:17748968-17749238(-)$1	270	182	221	13.9342
UUGAGUGUGUGGAAGUUGCUACGGGGAUGAUUUUACGAA	chr11:62622705-62622997(-)$1	292	141	180	13.6979
GUUUUUCCUUUUGCAGUCCAAAGUGUGGAAUGUUGUUGG	chr17:45736148-45736380(+)$1	232	98	137	13.0581
CAUUUCCAUUUAAAAAAACUGUUAGUUUACAAAUGGAAA	chr12:69653828-69654115(+)$1	287	166	205	12.2906
AAAACAAGGAAGGAUCCUAUGUAAUAGAUAAUCCUUUUU	chr20:39721118-39721372(+)$1	254	173	212	13.6902
AGCAUUGCACAGGGAGGCAGGCACUGGUCCUCUCUCAGG	chr17:17129354-17129618(-)$1	264	204	243	15.4260
GGCCGGAGUCCCGUUGCUGAGUCUCACAUCCGGGUUCUG	chr1:67395963-67396242(+)$1	279	19	58	14.1590
UAGUUUGAAUUGGCCUUGGCUCUCGUCAGGGACAGAAGA	chr22:19968569-19968840(-)$1	271	219	258	12.5480
CCCCGCGGCUGCGGCGCAGGUGCCCUCGGCCUGAGUCGG	chr1:11796195-11796434(+)$1	239	30	69	13.6537
GCUCUUUCUCGGUGAGCUCAGGUGGCGGGUUUGGGAAAG	chr16:21964676-21964988(+)$1	312	90	129	15.1146
AGGCCUCGGCCAUCCCCAGCACGGCCCAAGGUGGGUGAG	chr5:154179504-154179741(+)$1	237	68	107	13.3723
GUUUUUGGCCCAGCAAAUCUAGGAGAAGAUGCAAUUAAA	chr15:50861947-50862194(-)$1	247	17	56	15.3989
UUUUGUUUACAAUUAGGCUAUUUUUUAAUAUAGGAUUUA	chr1:25569983-25570239(-)$1	256	26	65	12.7572
ACUGAUUAUUAAAAUUGUCUAAAUGAGUAAAUUUUACCA	chr15:101826855-101827130(-)$1	275	82	121	12.4324
AAAUCAGCAGAUUGGGAGGGUAGAAUUUCUUCCAGUCAA	chr8:38099787-38100113(+)$1	326	41	80	15.4175
GUUGCUGUCUUCACCACAGGGUGCCUUGGUGAGUAUAAG	chr17:61900954-61901222(-)$1	268	153	192	16.4899
GGGAAGAGGACUUGUGAUUUAACCUGGAACACUCAUCCU	chr16:3334192-3334444(+)$1	252	121	160	12.3043
GUUAGGGACAGAGUAUGUGUAAGAACUACAUACUUUGUC	chr5:137708427-137708673(+)$1	246	166	205	14.8627
guugauaaugccucuacacucuagcuagagggaauguga	chr2:131126021-131126282(+)$1	261	5	44	11.7475
UCACAUGACAUAGUCUGUAUUGAAUGCAUGCUAAUCUUU	chr2:71623269-71623552(+)$1	283	136	175	11.6745
GGUGGUCUUGAUGCCUUAGGCCUCUCUUGUGGCUGUGGA	chr22:39708883-39709141(-)$1	258	24	63	11.8329
UCCAGGUGAGCCGCCUCCCGCUCCCGGGUCUCGGCGUCC	chr8:6566349-6566626(+)$1	277	54	93	12.1508
aagcucucuggccccucaguuuagaguuagccacuuuuc	chr9:123232067-123232433(-)$1	366	274	313	12.7834
AAGGCUGGCGGUGUGAGCCCUGGGGGCACCACUUGAGCU	chr2:220402535-220402792(+)$1	257	44	83	11.9372
GGAGAGCACCUGCCAGGCCCUCGGGGUGGGGGUGGGUGC	chr22:21349244-21349482(+)$1	238	145	184	16.6023
UCUAACUCUGAUUUUAGAAUCUUAAGGUUAGAAAAGAGA	chr16:47162068-47162352(-)$1	284	157	196	13.3260
GGGGUUGGGAGUGGUGGCAGCACUGGCACUGCUGUUUCC	chr9:37487870-37488157(+)$1	287	101	140	12.5579

#DB
.(((.(((.(((((((((....))).))).)))..))))	chr16:85822378-85822690(-)$1	1	58	97	10.8562
(((...(.(((..(((.(((......))).))).))).)	chr18:48586217-48586510(+)$1	1	81	120	14.6213
...((((((.(((((.((((...))))..)))))))).)	chr16:313696-313959(+)$1	1	174	213	11.8595
((((((((.(((....(((....)))....))).)))))	chr6:41904656-41904885(-)$1	1	165	204	11.8884
.((((((.((((((((((((...))))))))))))..))	chr12:9559724-9560018(-)$1	1	107	146	14.8507
((((..((.(.((((.(((....)))))))...).))..	chr10:102108212-102108465(+)$1	1	122	161	12.6216
..(.((((((((((((.(((....)))..))).))))))	chr11:118365042-118365347(+)$1	1	223	262	13.9217
((..((....((((((.(((....)))..))))))...)	chr4:57307960-57308231(+)$1	1	122	161	13.1331
.(((((...((((..(((......)))..)))).)))))	chr8:95878444-95878680(+)$1	1	105	144	12.7804
..(((.((...(((..((((...))))...)))...)))	chrX:47058896-47059167(+)$1	1	70	109	14.7295
(((((((((.((((..((((...))))...)))))))..	chr16:50346675-50346934(+)$1	1	154	193	14.2996
(((....(((((((((((((...)))))))))))))...	chr18:9117774-9118014(+)$1	1	30	69	16.4339
(.(((.((((..(((..(((...))).)))..)))).))	chr17:61841950-61842226(-)$1	1	178	217	13.1961
((((((..(((.(((..(((...)))..)))..)))..)	chr6:42641824-42642080(+)$1	1	140	179	13.4713
))).((.(((((((..((((...)))).))))))).)).	chr1:93805879-93806125(-)$1	1	136	175	11.4238
(.((((((..((.(((.(......)))).))))))))))	chr19:807992-808221(+)$1	1	83	122	12.0669
.....(((((.(.(..(((......)))..).).)))))	chr7:97935600-97935835(-)$1	1	155	194	12.9617
((((.(((.(.(((((((......)))))))).))).))	chr7:97816199-97816489(+)$1	1	159	198	13.6910
(((.(((...(((..((((....)))).)))...))).)	chr9:19082730-19082980(-)$1	1	7	46	13.4953
((..(((((((.(((((((....))))))).))))))).	chr11:118899781-118900046(-)$1	1	163	202	13.2659
(....(((.....(((((((......))))))))))...	chr19:50366025-50366281(-)$1	1	159	198	14.4501
.))))))))))(((((.(((...)))..))))).(((..	chr6:111329237-111329497(+)$1	1	114	153	12.3153
.(((((...(((((((((((....)))))))))))..))	chrX:118708825-118709090(+)$1	1	214	253	14.0715
(...((((.(..(((((......)))))..)...)))).	chr6:39163500-39163756(-)$1	1	55	94	12.4854
((...(((.((...((.((...))))...))))))))..	chr1:1244912-1245164(+)$1	1	155	194	12.1613
(((..(((....(((((.((...)).)))))...)))..	chr21:45496534-45496780(+)$1	1	14	53	13.4922
))))))((.((((((.(((......))).))))))...)	chr14:103987949-103988174(-)$1	1	174	213	13.6241
(((((((((.((.(((((((......))))))).)).))	chr1:17748968-17749238(-)$1	1	182	221	13.9342
((.(((.((((((((((.(....).)))..))))))).)	chr11:62622705-62622997(-)$1	1	141	180	13.6979
(....(((....(((.((((.....)))).)))....))	chr17:45736148-45736380(+)$1	1	98	137	13.0581
..(((((((((....(((((...)))))..)))))))))	chr12:69653828-69654115(+)$1	1	166	205	12.2906
)((((((((((((((.((((...))))...)))))))..	chr20:39721118-39721372(+)$1	1	173	212	13.6902
.((.(((...((((((((((...)))..)))))))))).	chr17:17129354-17129618(-)$1	1	204	243	15.4260
((((((((.((((.((.(((...)))))..)))))))))	chr1:67395963-67396242(+)$1	1	19	58	14.1590
(..(((....((.(((((((....))))))).)))))..	chr22:19968569-19968840(-)$1	1	219	258	12.5480
(..(.(((((..(((..(((...)))..)))..))))).	chr1:11796195-11796434(+)$1	1	30	69	13.6537
((((((((((((...(((.....)))....)))))))))	chr16:21964676-21964988(+)$1	1	90	129	15.1146
((((((((.(((((....((...))....))))).))))	chr5:154179504-154179741(+)$1	1	68	107	13.3723
((((((((....(((..(((......))))))..)))))	chr15:50861947-50862194(-)$1	1	17	56	15.3989
((((((.....((((((......))))))))))))))))	chr1:25569983-25570239(-)$1	1	26	65	12.7572
((.(((((.(((((((..((.....))..)))))))...	chr15:101826855-101827130(-)$1	1	82	121	12.4324
...((((..(((((((((((......)))))))))))..	chr8:38099787-38100113(+)$1	1	41	80	15.4175
(((..(((.(((((((.(((...)))))))))).))).)	chr17:61900954-61901222(-)$1	1	153	192	16.4899
((((((((((...(((.(((......))))))...))))	chr16:3334192-3334444(+)$1	1	121	160	12.3043
((((((((((((((((((((....)).))))))))))))	chr5:137708427-137708673(+)$1	1	166	205	14.8627
(((.(((.(.(((((((......).)))))).).))).)	chr2:131126021-131126282(+)$1	1	5	44	11.7475
(((...((..((((.(((((...))))).)))).))..)	chr2:71623269-71623552(+)$1	1	136	175	11.6745
(.(((((((.(((((.((((.....)))).))).)).))	chr22:39708883-39709141(-)$1	1	24	63	11.8329
(.(.((((.((((...((((....))))...))))...)	chr8:6566349-6566626(+)$1	1	54	93	12.1508
(((.....((((..(((......)))...))))))))))	chr9:123232067-123232433(-)$1	1	274	313	12.7834
..((((.(.((((.(.((((...)))).)))))).))))	chr2:220402535-220402792(+)$1	1	44	83	11.9372
(....(((((((((..((((...))))...)))))))))	chr22:21349244-21349482(+)$1	1	145	184	16.6023
(((...(((((((((((....)))))))))))..)))((	chr16:47162068-47162352(-)$1	1	157	196	13.3260
((((..((.(((((((.((....)).))))))).)))))	chr9:37487870-37488157(+)$1	1	101	140	12.5579

#PSSM
c : 0.20	g : 0.11	= : 0.11	e : 0.09	f : 0.07	[ : 0.05	i : 0.05	: : 0.03	h : 0.03	! : 0.03	$ : 0.03	d : 0.03	b : 0.03	) : 0.01	% : 0.01	m : 0.01	" : 0.01	
c : 0.12	g : 0.12	= : 0.12	f : 0.07	e : 0.07	[ : 0.07	# : 0.05	i : 0.05	! : 0.05	h : 0.03	$ : 0.03	d : 0.03	" : 0.03	) : 0.01	% : 0.01	: : 0.01	b : 0.01	
g : 0.12	c : 0.11	= : 0.11	f : 0.09	! : 0.07	e : 0.07	i : 0.07	d : 0.05	# : 0.05	" : 0.05	h : 0.03	a : 0.03	[ : 0.03	) : 0.01	$ : 0.01	b : 0.01	
c : 0.11	= : 0.11	" : 0.09	g : 0.09	[ : 0.09	e : 0.09	! : 0.07	# : 0.07	i : 0.07	f : 0.05	$ : 0.03	d : 0.03	h : 0.01	: : 0.01	a : 0.01	
c : 0.14	= : 0.11	i : 0.09	" : 0.07	! : 0.07	g : 0.07	# : 0.07	d : 0.07	[ : 0.05	f : 0.05	b : 0.05	e : 0.05	$ : 0.03	h : 0.01	
c : 0.24	i : 0.11	e : 0.11	= : 0.11	g : 0.07	d : 0.07	" : 0.05	b : 0.05	f : 0.03	! : 0.03	[ : 0.03	h : 0.01	# : 0.01	$ : 0.01	
c : 0.22	i : 0.11	b : 0.09	= : 0.09	d : 0.07	e : 0.07	# : 0.05	[ : 0.05	g : 0.05	f : 0.03	" : 0.03	$ : 0.03	a : 0.01	h : 0.01	! : 0.01	
c : 0.16	i : 0.11	= : 0.11	b : 0.09	g : 0.09	" : 0.07	e : 0.07	[ : 0.05	d : 0.05	# : 0.03	! : 0.03	$ : 0.03	h : 0.01	f : 0.01	a : 0.01	
[ : 0.25	= : 0.11	# : 0.09	" : 0.09	g : 0.09	c : 0.07	i : 0.07	! : 0.05	e : 0.05	d : 0.03	$ : 0.03	a : 0.01	
= : 0.14	g : 0.12	d : 0.11	[ : 0.09	# : 0.09	c : 0.07	e : 0.07	a : 0.05	i : 0.05	" : 0.05	! : 0.03	$ : 0.03	b : 0.01	f : 0.01	
= : 0.14	g : 0.14	d : 0.12	c : 0.09	b : 0.09	[ : 0.05	i : 0.05	f : 0.05	! : 0.05	# : 0.05	e : 0.03	" : 0.03	$ : 0.03	
d : 0.14	g : 0.14	= : 0.12	c : 0.07	! : 0.07	f : 0.07	b : 0.07	# : 0.07	e : 0.05	i : 0.03	[ : 0.03	" : 0.03	a : 0.01	$ : 0.01	
c : 0.16	g : 0.16	d : 0.12	= : 0.11	e : 0.09	f : 0.07	[ : 0.07	" : 0.05	! : 0.03	# : 0.03	i : 0.03	$ : 0.01	
c : 0.22	g : 0.22	= : 0.11	e : 0.09	f : 0.07	d : 0.05	! : 0.05	" : 0.05	# : 0.03	[ : 0.03	a : 0.01	i : 0.01	
c : 0.24	g : 0.18	! : 0.12	= : 0.11	e : 0.07	f : 0.07	# : 0.05	b : 0.03	" : 0.03	d : 0.01	[ : 0.01	a : 0.01	
c : 0.16	! : 0.16	g : 0.16	[ : 0.12	= : 0.11	e : 0.09	f : 0.05	# : 0.03	b : 0.03	d : 0.01	" : 0.01	
d : 0.20	[ : 0.18	c : 0.16	= : 0.11	g : 0.11	! : 0.09	e : 0.07	# : 0.01	f : 0.01	a : 0.01	
c : 0.35	d : 0.20	= : 0.09	g : 0.09	o : 0.07	b : 0.03	[ : 0.03	e : 0.03	a : 0.01	# : 0.01	! : 0.01	m : 0.01	
c : 0.29	d : 0.20	o : 0.12	b : 0.11	= : 0.07	g : 0.07	m : 0.03	e : 0.03	a : 0.01	n : 0.01	
c : 0.22	d : 0.18	o : 0.16	m : 0.14	= : 0.07	b : 0.07	g : 0.05	e : 0.03	l : 0.01	n : 0.01	
l : 0.38	o : 0.27	m : 0.25	n : 0.07	
l : 0.38	o : 0.27	m : 0.24	n : 0.07	= : 0.01	
l : 0.37	o : 0.27	m : 0.22	n : 0.07	c : 0.01	b : 0.01	= : 0.01	
c : 0.22	o : 0.20	d : 0.14	m : 0.11	b : 0.07	= : 0.05	e : 0.05	n : 0.05	a : 0.03	g : 0.01	f : 0.01	
c : 0.27	d : 0.16	o : 0.14	b : 0.09	= : 0.07	g : 0.05	e : 0.05	n : 0.05	] : 0.03	a : 0.01	f : 0.01	
c : 0.33	d : 0.20	o : 0.11	= : 0.07	] : 0.05	g : 0.05	e : 0.05	b : 0.05	f : 0.03	4 : 0.01	
d : 0.22	c : 0.20	g : 0.12	= : 0.09	2 : 0.07	e : 0.07	4 : 0.05	] : 0.03	3 : 0.03	b : 0.03	f : 0.03	
c : 0.16	2 : 0.16	g : 0.12	= : 0.11	3 : 0.11	d : 0.07	e : 0.07	4 : 0.05	] : 0.05	f : 0.03	b : 0.01	
2 : 0.18	g : 0.16	c : 0.14	3 : 0.12	= : 0.11	4 : 0.05	d : 0.05	] : 0.05	e : 0.03	f : 0.03	a : 0.01	
g : 0.18	= : 0.12	c : 0.12	d : 0.09	3 : 0.09	2 : 0.09	] : 0.07	e : 0.07	f : 0.05	4 : 0.03	b : 0.03	
c : 0.22	g : 0.20	= : 0.14	d : 0.11	e : 0.07	f : 0.05	3 : 0.03	b : 0.03	a : 0.03	i : 0.03	2 : 0.01	] : 0.01	
c : 0.18	g : 0.18	= : 0.14	d : 0.12	3 : 0.07	e : 0.05	f : 0.05	2 : 0.05	] : 0.05	i : 0.03	a : 0.01	
g : 0.18	d : 0.14	c : 0.12	= : 0.12	3 : 0.09	2 : 0.07	e : 0.05	f : 0.05	] : 0.03	a : 0.03	i : 0.03	b : 0.01	
] : 0.18	= : 0.12	g : 0.12	3 : 0.09	d : 0.07	c : 0.07	2 : 0.05	e : 0.05	i : 0.05	f : 0.05	a : 0.03	: : 0.01	4 : 0.01	b : 0.01	
c : 0.25	= : 0.14	g : 0.12	i : 0.07	b : 0.07	] : 0.05	f : 0.05	e : 0.05	d : 0.05	3 : 0.03	2 : 0.01	h : 0.01	4 : 0.01	
c : 0.29	= : 0.11	b : 0.09	i : 0.09	g : 0.09	3 : 0.07	e : 0.07	d : 0.05	2 : 0.03	h : 0.01	] : 0.01	f : 0.01	4 : 0.01	
c : 0.24	i : 0.09	g : 0.09	= : 0.09	2 : 0.07	3 : 0.07	e : 0.07	] : 0.07	b : 0.05	4 : 0.05	d : 0.03	h : 0.01	f : 0.01	
i : 0.12	] : 0.11	e : 0.11	2 : 0.11	c : 0.09	3 : 0.09	g : 0.07	= : 0.07	4 : 0.05	b : 0.03	d : 0.03	h : 0.01	f : 0.01	! : 0.01	9 : 0.01	
c : 0.12	i : 0.12	e : 0.09	2 : 0.09	= : 0.07	g : 0.07	3 : 0.05	b : 0.05	4 : 0.05	d : 0.05	h : 0.03	f : 0.03	] : 0.03	a : 0.01	: : 0.01	! : 0.01	9 : 0.01	

#score	723.3902691442166
#seq	54
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_UTR_m1_run1.txt

#BEAR
dddooooooddd	chr13:113539258-113539515(+)$1	257	137	149	10.4589
cccooooooccc	chr11:2153025-2153231(-)$1	206	24	36	11.6156
cccooooooccc	chr3:52514444-52514736(+)$1	292	243	255	11.6156
cccooooooccc	chr11:2152648-2152852(-)$1	204	63	75	11.6156
cccooooooccc	chr21:46915542-46915875(+)$1	333	270	282	11.6156
cccooooooccc	chr11:2152902-2153106(-)$1	204	112	124	11.6156
dddooooooddd	chr16:89787178-89787430(-)$1	252	155	167	10.4589
cccooooooccc	chr11:75162932-75163158(-)$1	226	203	215	11.6156
cccooooooccc	chr14:24563639-24563903(+)$1	264	186	198	11.6156
cccooooooccc	chr8:145689409-145689720(-)$1	311	215	227	11.6156
cccooooooccc	chr11:2152861-2153066(-)$1	205	72	84	11.6156
iiiooooooiii	chr20:33932106-33932369(-)$1	263	39	51	9.8312
cccooooooccc	chr22:20114108-20114366(+)$1	258	188	200	11.6156
cccooooooccc	chr9:139756885-139757141(-)$1	256	157	169	11.6156
cccooooooccc	chr11:2153045-2153251(-)$1	206	44	56	11.6156
cccooooooccc	chr19:10801310-10801557(+)$1	247	55	67	11.6156
cccooooooccc	chr11:2152481-2152688(-)$1	207	39	51	11.6156
dddooooooddd	chr2:242167795-242168080(-)$1	285	164	176	10.4589
dddooooooddd	chr18:47018535-47018791(-)$1	256	165	177	10.4589
dddooooooddd	chr20:30310473-30310733(-)$1	260	96	108	10.4589
cccooooooccc	chr11:2152676-2152880(-)$1	204	91	103	11.6156
cccooooooccc	chr20:36155782-36156094(-)$1	312	149	161	11.6156
cccooooooccc	chr11:2153583-2153787(-)$1	204	173	185	11.6156
dddooooooddd	chr3:38178385-38178652(-)$1	267	46	58	10.4589
cccooooooccc	chr11:2153098-2153301(-)$1	203	94	106	11.6156
cccooooooccc	chr11:2152817-2153020(-)$1	203	105	117	11.6156
cccooooooccc	chr11:2152488-2152692(-)$1	204	43	55	11.6156
dddooooooddd	chr2:242275399-242275625(+)$1	226	116	128	10.4589
dddooooooddd	chr4:1020396-1020664(+)$1	268	225	237	10.4589
cccooooooccc	chr11:2152462-2152670(-)$1	208	21	33	11.6156
cccooooooccc	chr11:2153227-2153436(-)$1	209	86	98	11.6156
cccooooooccc	chr11:2152521-2152724(-)$1	203	33	45	11.6156
dddooooooddd	chr19:19101976-19102257(-)$1	281	47	59	10.4589
cccooooooccc	chr11:2152456-2152662(-)$1	206	13	25	11.6156
dddooooooddd	chr18:34375177-34375472(-)$1	295	52	64	10.4589
cccooooooccc	chr22:42334996-42335253(-)$1	257	100	112	11.6156
cccooooooccc	chr11:2152609-2152812(-)$1	203	121	133	11.6156
cccooooooccc	chr4:15656785-15657067(-)$1	282	232	244	11.6156
cccooooooccc	chr11:2152793-2152999(-)$1	206	84	96	11.6156
dddooooooddd	chr11:72852199-72852453(-)$1	254	125	137	10.4589
cccooooooccc	chr11:2152451-2152655(-)$1	204	6	18	11.6156
cccooooooccc	chr11:2152592-2152796(-)$1	204	7	19	11.6156
cccooooooccc	chr3:39183795-39184047(-)$1	252	0	12	11.6156
cccooooooccc	chr11:2152820-2153024(-)$1	204	109	121	11.6156
cccooooooccc	chr11:2152750-2152956(-)$1	206	41	53	11.6156
gggooooooggg	chr17:79859254-79859509(-)$1	255	106	118	9.7765
dddooooooddd	chr17:73873905-73874163(+)$1	258	196	208	10.4589
cccooooooccc	chr11:2153056-2153260(-)$1	204	53	65	11.6156
cccooooooccc	chr16:2514496-2514729(+)$1	233	219	231	11.6156
cccooooooccc	chr13:99853191-99853434(+)$1	243	41	53	11.6156
cccooooooccc	chr11:2152616-2152824(-)$1	208	35	47	11.6156
dddooooooddd	chr8:21960875-21961152(+)$1	277	180	192	10.4589
cccooooooccc	chr2:242254684-242254962(-)$1	278	205	217	11.6156
cccooooooccc	chr11:2152449-2152651(-)$1	202	2	14	11.6156
cccooooooccc	chr11:2152840-2153047(-)$1	207	53	65	11.6156
dddooooooddd	chr17:80818136-80818383(+)$1	247	175	187	10.4589
dddooooooddd	chr9:136229392-136229643(-)$1	251	179	191	10.4589
dddooooooddd	chr2:24055330-24055615(-)$1	285	257	269	10.4589
cccooooooccc	chr11:2152729-2152933(-)$1	204	18	30	11.6156
gggooooooggg	chr12:106719506-106719765(+)$1	259	226	238	9.7765
dddooooooddd	chr16:1413572-1413842(-)$1	270	211	223	10.4589
cccooooooccc	chr16:89354131-89354366(-)$1	235	143	155	11.6156
cccooooooccc	chr11:2152533-2152736(-)$1	203	45	57	11.6156
cccooooooccc	chr20:61518564-61518825(-)$1	261	155	167	11.6156
cccooooooccc	chr11:2153456-2153662(-)$1	206	48	60	11.6156
===oooooo===	chr14:75483222-75483493(-)$1	271	122	134	9.8606
dddooooooddd	chr9:132652220-132652470(-)$1	250	100	112	10.4589
dddooooooddd	chr19:2270214-2270443(+)$1	229	67	79	10.4589
cccooooooccc	chr11:2152783-2152988(-)$1	205	73	85	11.6156

#otherMatches

#Seq PSSM
cacacacacgug	chr13:113539258-113539515(+)$1	257	137	149	10.4589
gcacacacaugc	chr11:2153025-2153231(-)$1	206	24	36	11.6156
GACUUUACUGUC	chr3:52514444-52514736(+)$1	292	243	255	11.6156
gcacacacaugc	chr11:2152648-2152852(-)$1	204	63	75	11.6156
GCCCUCCCUGGC	chr21:46915542-46915875(+)$1	333	270	282	11.6156
gcacacacaugc	chr11:2152902-2153106(-)$1	204	112	124	11.6156
GGCGCCAUGGCC	chr16:89787178-89787430(-)$1	252	155	167	10.4589
AGUGCUAUUGCU	chr11:75162932-75163158(-)$1	226	203	215	11.6156
CGGUGCUCCUCG	chr14:24563639-24563903(+)$1	264	186	198	11.6156
UGGAUACAGCCA	chr8:145689409-145689720(-)$1	311	215	227	11.6156
gcacacacaugc	chr11:2152861-2153066(-)$1	205	72	84	11.6156
CCAAAGCCCUGG	chr20:33932106-33932369(-)$1	263	39	51	9.8312
UUCGUCACUGAA	chr22:20114108-20114366(+)$1	258	188	200	11.6156
GUCUAAGGUGAU	chr9:139756885-139757141(-)$1	256	157	169	11.6156
gcacacacaugc	chr11:2153045-2153251(-)$1	206	44	56	11.6156
CAGGAAGAACUG	chr19:10801310-10801557(+)$1	247	55	67	11.6156
CCACAAAAUUGG	chr11:2152481-2152688(-)$1	207	39	51	11.6156
UGGGCACUUCCA	chr2:242167795-242168080(-)$1	285	164	176	10.4589
UCCGCAGAGGGA	chr18:47018535-47018791(-)$1	256	165	177	10.4589
GGGGCUGGUUCC	chr20:30310473-30310733(-)$1	260	96	108	10.4589
gcacacacaugc	chr11:2152676-2152880(-)$1	204	91	103	11.6156
UGGCCUUGUCCA	chr20:36155782-36156094(-)$1	312	149	161	11.6156
GCACGUCGCUGC	chr11:2153583-2153787(-)$1	204	173	185	11.6156
UGCGCGUGUGCG	chr3:38178385-38178652(-)$1	267	46	58	10.4589
gcacacacaugc	chr11:2153098-2153301(-)$1	203	94	106	11.6156
gcacacacaugc	chr11:2152817-2153020(-)$1	203	105	117	11.6156
CCACAAAAUUGG	chr11:2152488-2152692(-)$1	204	43	55	11.6156
AUGCUCCCCCAU	chr2:242275399-242275625(+)$1	226	116	128	10.4589
UUUGAGCUGAAG	chr4:1020396-1020664(+)$1	268	225	237	10.4589
CCACAAAAUUGG	chr11:2152462-2152670(-)$1	208	21	33	11.6156
UGCAUCCCCGCA	chr11:2153227-2153436(-)$1	209	86	98	11.6156
gcacccaccugc	chr11:2152521-2152724(-)$1	203	33	45	11.6156
GGACACCUCUCC	chr19:19101976-19102257(-)$1	281	47	59	10.4589
CCACAAAAUUGG	chr11:2152456-2152662(-)$1	206	13	25	11.6156
AGUUUUUGUACU	chr18:34375177-34375472(-)$1	295	52	64	10.4589
GCAGAUCUGUGC	chr22:42334996-42335253(-)$1	257	100	112	11.6156
gcacccaccugc	chr11:2152609-2152812(-)$1	203	121	133	11.6156
UGCGACAAGGUA	chr4:15656785-15657067(-)$1	282	232	244	11.6156
gcacacacaugc	chr11:2152793-2152999(-)$1	206	84	96	11.6156
CCCGGCUGAGGG	chr11:72852199-72852453(-)$1	254	125	137	10.4589
CCACAAAAUUGG	chr11:2152451-2152655(-)$1	204	6	18	11.6156
gcacacacaugc	chr11:2152592-2152796(-)$1	204	7	19	11.6156
UGGGUAAUGCCA	chr3:39183795-39184047(-)$1	252	0	12	11.6156
gcacacacaugc	chr11:2152820-2153024(-)$1	204	109	121	11.6156
gcacacacaugc	chr11:2152750-2152956(-)$1	206	41	53	11.6156
GGGUAUCUUCCC	chr17:79859254-79859509(-)$1	255	106	118	9.7765
CCGGCGCAGCGG	chr17:73873905-73874163(+)$1	258	196	208	10.4589
gcacacacaugc	chr11:2153056-2153260(-)$1	204	53	65	11.6156
GUCUUCCCUGGC	chr16:2514496-2514729(+)$1	233	219	231	11.6156
GCCACCCUAGGC	chr13:99853191-99853434(+)$1	243	41	53	11.6156
gcacacacaugc	chr11:2152616-2152824(-)$1	208	35	47	11.6156
CGCACCCAGGCG	chr8:21960875-21961152(+)$1	277	180	192	10.4589
GCGAGCGGCCGC	chr2:242254684-242254962(-)$1	278	205	217	11.6156
CCACAAAAUUGG	chr11:2152449-2152651(-)$1	202	2	14	11.6156
gcacacacaugc	chr11:2152840-2153047(-)$1	207	53	65	11.6156
UGGAAGGAACCA	chr17:80818136-80818383(+)$1	247	175	187	10.4589
ACUCAACCCAGU	chr9:136229392-136229643(-)$1	251	179	191	10.4589
uagucuuaguua	chr2:24055330-24055615(-)$1	285	257	269	10.4589
gcacacacaugc	chr11:2152729-2152933(-)$1	204	18	30	11.6156
AUUAGAAGAAAU	chr12:106719506-106719765(+)$1	259	226	238	9.7765
GUGGAGGCGCGC	chr16:1413572-1413842(-)$1	270	211	223	10.4589
GGUCCUGGAGCC	chr16:89354131-89354366(-)$1	235	143	155	11.6156
gcacccaccugc	chr11:2152533-2152736(-)$1	203	45	57	11.6156
UAUGUAACAGUA	chr20:61518564-61518825(-)$1	261	155	167	11.6156
GCACGUCGCUGC	chr11:2153456-2153662(-)$1	206	48	60	11.6156
CUGCCUUCCCAG	chr14:75483222-75483493(-)$1	271	122	134	9.8606
AUCCGUGUCGAU	chr9:132652220-132652470(-)$1	250	100	112	10.4589
GUGAAUCUGCAC	chr19:2270214-2270443(+)$1	229	67	79	10.4589
gcacacacaugc	chr11:2152783-2152988(-)$1	205	73	85	11.6156

#DB
(((......)))	chr13:113539258-113539515(+)$1	1	137	149	10.4589
(((......)))	chr11:2153025-2153231(-)$1	1	24	36	11.6156
(((......)))	chr3:52514444-52514736(+)$1	1	243	255	11.6156
(((......)))	chr11:2152648-2152852(-)$1	1	63	75	11.6156
(((......)))	chr21:46915542-46915875(+)$1	1	270	282	11.6156
(((......)))	chr11:2152902-2153106(-)$1	1	112	124	11.6156
(((......)))	chr16:89787178-89787430(-)$1	1	155	167	10.4589
(((......)))	chr11:75162932-75163158(-)$1	1	203	215	11.6156
(((......)))	chr14:24563639-24563903(+)$1	1	186	198	11.6156
(((......)))	chr8:145689409-145689720(-)$1	1	215	227	11.6156
(((......)))	chr11:2152861-2153066(-)$1	1	72	84	11.6156
(((......)))	chr20:33932106-33932369(-)$1	1	39	51	9.8312
(((......)))	chr22:20114108-20114366(+)$1	1	188	200	11.6156
(((......)))	chr9:139756885-139757141(-)$1	1	157	169	11.6156
(((......)))	chr11:2153045-2153251(-)$1	1	44	56	11.6156
(((......)))	chr19:10801310-10801557(+)$1	1	55	67	11.6156
(((......)))	chr11:2152481-2152688(-)$1	1	39	51	11.6156
(((......)))	chr2:242167795-242168080(-)$1	1	164	176	10.4589
(((......)))	chr18:47018535-47018791(-)$1	1	165	177	10.4589
(((......)))	chr20:30310473-30310733(-)$1	1	96	108	10.4589
(((......)))	chr11:2152676-2152880(-)$1	1	91	103	11.6156
(((......)))	chr20:36155782-36156094(-)$1	1	149	161	11.6156
(((......)))	chr11:2153583-2153787(-)$1	1	173	185	11.6156
(((......)))	chr3:38178385-38178652(-)$1	1	46	58	10.4589
(((......)))	chr11:2153098-2153301(-)$1	1	94	106	11.6156
(((......)))	chr11:2152817-2153020(-)$1	1	105	117	11.6156
(((......)))	chr11:2152488-2152692(-)$1	1	43	55	11.6156
(((......)))	chr2:242275399-242275625(+)$1	1	116	128	10.4589
(((......)))	chr4:1020396-1020664(+)$1	1	225	237	10.4589
(((......)))	chr11:2152462-2152670(-)$1	1	21	33	11.6156
(((......)))	chr11:2153227-2153436(-)$1	1	86	98	11.6156
(((......)))	chr11:2152521-2152724(-)$1	1	33	45	11.6156
(((......)))	chr19:19101976-19102257(-)$1	1	47	59	10.4589
(((......)))	chr11:2152456-2152662(-)$1	1	13	25	11.6156
(((......)))	chr18:34375177-34375472(-)$1	1	52	64	10.4589
(((......)))	chr22:42334996-42335253(-)$1	1	100	112	11.6156
(((......)))	chr11:2152609-2152812(-)$1	1	121	133	11.6156
(((......)))	chr4:15656785-15657067(-)$1	1	232	244	11.6156
(((......)))	chr11:2152793-2152999(-)$1	1	84	96	11.6156
(((......)))	chr11:72852199-72852453(-)$1	1	125	137	10.4589
(((......)))	chr11:2152451-2152655(-)$1	1	6	18	11.6156
(((......)))	chr11:2152592-2152796(-)$1	1	7	19	11.6156
(((......)))	chr3:39183795-39184047(-)$1	1	0	12	11.6156
(((......)))	chr11:2152820-2153024(-)$1	1	109	121	11.6156
(((......)))	chr11:2152750-2152956(-)$1	1	41	53	11.6156
(((......)))	chr17:79859254-79859509(-)$1	1	106	118	9.7765
(((......)))	chr17:73873905-73874163(+)$1	1	196	208	10.4589
(((......)))	chr11:2153056-2153260(-)$1	1	53	65	11.6156
(((......)))	chr16:2514496-2514729(+)$1	1	219	231	11.6156
(((......)))	chr13:99853191-99853434(+)$1	1	41	53	11.6156
(((......)))	chr11:2152616-2152824(-)$1	1	35	47	11.6156
(((......)))	chr8:21960875-21961152(+)$1	1	180	192	10.4589
(((......)))	chr2:242254684-242254962(-)$1	1	205	217	11.6156
(((......)))	chr11:2152449-2152651(-)$1	1	2	14	11.6156
(((......)))	chr11:2152840-2153047(-)$1	1	53	65	11.6156
(((......)))	chr17:80818136-80818383(+)$1	1	175	187	10.4589
(((......)))	chr9:136229392-136229643(-)$1	1	179	191	10.4589
(((......)))	chr2:24055330-24055615(-)$1	1	257	269	10.4589
(((......)))	chr11:2152729-2152933(-)$1	1	18	30	11.6156
(((......)))	chr12:106719506-106719765(+)$1	1	226	238	9.7765
(((......)))	chr16:1413572-1413842(-)$1	1	211	223	10.4589
(((......)))	chr16:89354131-89354366(-)$1	1	143	155	11.6156
(((......)))	chr11:2152533-2152736(-)$1	1	45	57	11.6156
(((......)))	chr20:61518564-61518825(-)$1	1	155	167	11.6156
(((......)))	chr11:2153456-2153662(-)$1	1	48	60	11.6156
(((......)))	chr14:75483222-75483493(-)$1	1	122	134	9.8606
(((......)))	chr9:132652220-132652470(-)$1	1	100	112	10.4589
(((......)))	chr19:2270214-2270443(+)$1	1	67	79	10.4589
(((......)))	chr11:2152783-2152988(-)$1	1	73	85	11.6156

#PSSM
c : 0.66	d : 0.27	g : 0.02	i : 0.01	= : 0.01	
c : 0.66	d : 0.27	g : 0.02	i : 0.01	= : 0.01	
c : 0.66	d : 0.27	g : 0.02	i : 0.01	= : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.66	d : 0.27	g : 0.02	i : 0.01	= : 0.01	
c : 0.66	d : 0.27	g : 0.02	i : 0.01	= : 0.01	
c : 0.66	d : 0.27	g : 0.02	i : 0.01	= : 0.01	

#score	772.2875955821032
#seq	69
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF844VZT_HNRNPU_transcript_m1_run1.txt

#BEAR
hhhhhhddddcccqqqqqqqqccc]dddd:ddd	chr10:101164372-101164670(-)$1	298	150	183	12.5857
""dddd[dddd[aqqqqqqqqa]dddddddd33	chr11:65192556-65192790(+)$1	234	66	99	14.8784
iiiiiii"""cccqqqqqqqqccc4444iiiii	chr4:10108870-10109136(-)$1	266	111	144	17.6626
[bb[bb!!eeeeeqqqqqqqqeeeee]bb]bb]	chr22:22121585-22121839(-)$1	254	85	118	13.4124
ii[ddddwwwwwwwwwwwwwwdddd22iiiiii	chr7:120836198-120836486(+)$1	288	150	183	12.0477
"""ffffffddddqqqqqqqqdddd]ffffffc	chr21:39449734-39450003(-)$1	269	185	218	14.5305
ccc!!bb!!ddddssssssssssdddd]bb]cc	chr16:81580656-81580968(+)$1	312	259	292	10.3290
ddd[gggggggbbrrrrrrrrrbb4444ggggg	chr22:42275774-42276028(+)$1	254	123	156	12.2740
heeeee"""ddddqqqqqqqqdddd22eeeee3	chr10:72509038-72509270(+)$1	232	66	99	14.5701
hhh[dddd[ddddqqqqqqqqdddd22dddd22	chr12:54811947-54812203(-)$1	256	72	105	14.2637
bb"""ddddddddqqqqqqqqdddd]ddddbb:	chr11:2711454-2711726(-)$1	272	114	147	12.8407
a[eeeeewwwwwwwwwwwwwweeeee333a]bb	chr7:32561141-32561501(+)$1	360	152	185	11.0740
=========!!bbpppppppbb22=========	chr2:145270226-145270503(-)$1	277	161	194	11.7626
""ddddccc!!bbqqqqqqqqbb22ccc]dddd	chr11:992110-992382(+)$1	272	140	173	15.2791
"""bb[ccc[arrrrrrrrra]ccc333bbccc	chr2:145271736-145271989(-)$1	253	117	150	11.6367
ggggggg[bb[bbqqqqqqqqbb]bbggggggg	chr18:9117435-9117711(+)$1	276	199	232	14.7290
eee[eeeee!!arrrrrrrrra22eeeee22ee	chr3:100428749-100429007(+)$1	258	42	75	10.5267
$$$eeeee[ddddqqqqqqqqdddd]eeeee77	chr19:49843200-49843488(-)$1	288	165	198	13.4154
!!ffffff!!cccqqqqqqqqccc]ffffff22	chr6:52227534-52227844(+)$1	310	85	118	15.5403
ccc[ccc!!ddddpppppppdddd22ccc]ccc	chr19:34877711-34877979(+)$1	268	133	166	10.2699
"""a!!ffffffrrrrrrrrrffffff22a333	chr14:73924306-73924596(-)$1	290	50	83	11.8384
occciiiiiiiiiqqqqqqqqiiiiiiiiiHHH	chr3:9472611-9472874(+)$1	263	217	250	13.5853
ffff[bbffffffqqqqqqqqffffff]bb]ff	chr7:143084284-143084574(+)$1	290	191	224	12.3325
=============qqqqqqqq============	chr16:81522772-81523102(+)$1	330	213	246	17.5313
#iiiiiiiii[bbpppppppbb]iiiiiiiii3	chr19:56147600-56147897(+)$1	297	146	179	11.5103
b!!ccc!!ccc[aqqqqqqqqa]ccc22ccc22	chr3:15091848-15092097(-)$1	249	99	132	16.0663
$$$$ccc[eeeeeqqqqqqqqeeeee]ccc555	chr11:991679-991953(+)$1	274	206	239	12.6439
iiiiiiii"""bbpppppppbb333iiiiiiii	chrM:2786-2995(+)$1	209	161	194	11.8713
b[==========ssssssssss==========b	chr22:23535111-23535366(+)$1	255	163	196	13.0635
[a[ffffff!!bbqqqqqqqqbb22ffffff]a	chr16:67204990-67205240(+)$1	250	14	47	15.1214
%%ccc!!ffffffqqqqqqqqffffff22ccc5	chr17:79544178-79544462(-)$1	284	108	141	12.4497
!!ggggggg[bbssssssssssbb]gggggggf	chr1:65724913-65725233(+)$1	320	76	109	12.0334
[ggggggg"""bbqqqqqqqqbb333ggggggg	chr17:40853444-40853714(-)$1	270	205	238	17.1857
""iiiiiiiii[aqqqqqqqqa]iiiiiiiii2	chr1:44698741-44699015(-)$1	274	172	205	17.2028
eee[dddd[ddddqqqqqqqqdddd22dddd]e	chr11:2707047-2707266(-)$1	219	98	131	14.2448
ga[ccc[ffffffqqqqqqqqffffff]ccc]a	chr22:20935036-20935280(+)$1	244	174	207	14.7094
bccc[ccc"""bbqqqqqqqqbb22cccccc]b	chr12:109124206-109124496(-)$1	290	169	202	15.8950
hhhhhdddd[cccqqqqqqqqccc]dddddddd	chr20:49191535-49191836(+)$1	301	159	192	13.7352
!!eeeee####bbqqqqqqqqbbeeeee22fff	chr15:66906666-66906940(+)$1	274	36	69	14.9237
!ccc[hhhhhhhhqqqqqqqqhhhhhhhh333c	chr8:130493716-130493996(-)$1	280	169	202	12.9672
FFeeeee!!ddddqqqqqqqqdddd22eeeee:	chrX:41194443-41194687(+)$1	244	145	178	12.6694
b"""ccc####bbrrrrrrrrrbb333ccc22b	chr4:10116259-10116527(-)$1	268	98	131	13.4868
bb[dddd!!ddddrrrrrrrrrdddd22dddd]	chr10:35694148-35694418(+)$1	270	21	54	11.1812
"""==========rrrrrrrrr==========]	chr3:48642303-48642584(-)$1	281	225	258	14.7942
"a[cccccc!!bbqqqqqqqqbb22ccc]ccc]	chr7:127723516-127723844(+)$1	328	119	152	16.5230
ccc[ccc[eeeeeqqqqqqqqeeeee]cccccc	chr22:19493466-19493737(+)$1	271	15	48	15.0429
dddccc####cccqqqqqqqqccc4444ccc]d	chr7:5636512-5636785(+)$1	273	115	148	16.1073
g"""ccc[a!!cccpppppppccc22a]ccc22	chr11:2714340-2714595(-)$1	255	77	110	11.5816
=========[bbssssssssssbb]========	chr7:155505677-155505937(+)$1	260	143	176	13.1350
==========cccqqqqqqqqcccbb[bb[aoo	chr17:1465194-1465494(-)$1	300	217	250	14.5593
ddd[ccc"""cccqqqqqqqqccc22ccc]ddd	chr10:72514369-72514624(+)$1	255	186	219	15.9436
[bb[a[bb!!cccqqqqqqqqccc22bb]abb]	chr8:11665544-11665812(+)$1	268	15	48	14.8739
iii"""eeeee[aqqqqqqqqa]eeeeeiiiii	chr11:126140156-126140473(+)$1	317	43	76	15.2236

#otherMatches

#Seq PSSM
uuauucucagggcagugcggagccacugaaauc	chr10:101164372-101164670(-)$1	298	150	183	12.5857
AGAAGUUGCUUAGAAACUUUCCAAAGUGCUUAG	chr11:65192556-65192790(+)$1	234	66	99	14.8784
AGGGUGGAGAUGCAUUCCAAAGCAGUUAUCGCU	chr4:10108870-10109136(-)$1	266	111	144	17.6626
AAAGACGAUCUCUCAAACCCAAGGGAAGUGUUG	chr22:22121585-22121839(-)$1	254	85	118	13.4124
GUUGUGGGCCCUAUGAGAAAGCUACCUGCAGGC	chr7:120836198-120836486(+)$1	288	150	183	12.0477
agacagacuagaugaaaccaaauuucggucugc	chr21:39449734-39450003(-)$1	269	185	218	14.5305
GAGGGUGACUCUGGAGGGGGACACAGACCAGCU	chr16:81580656-81580968(+)$1	312	259	292	10.3290
cugugaguuugccuaaAACCAugguucucaaac	chr22:42275774-42276028(+)$1	254	123	156	12.2740
aaacugaggcagcacaguggggcugaguaguuu	chr10:72509038-72509270(+)$1	232	66	99	14.5701
CCAAUCUCUGUUCAGGCGAGGGGAUCCGAGAAC	chr12:54811947-54812203(-)$1	256	72	105	14.2637
GCACAUGUUCCAUGCCAAGUAGUGGAAACAGCA	chr11:2711454-2711726(-)$1	272	114	147	12.8407
cagcugcggaaauuuguguaaguagcaaggagc	chr7:32561141-32561501(+)$1	360	152	185	11.0740
CUAGGCUGAUCUAUUUGUUUUAUUUUGGUCUGG	chr2:145270226-145270503(-)$1	277	161	194	11.7626
CUGGCUGUGGCCGUGGCCUUCUGUGCACUGGUC	chr11:992110-992382(+)$1	272	140	173	15.2791
AAGGCGACAAGGAGAUAAAACGUGUAAAGCAGU	chr2:145271736-145271989(-)$1	253	117	150	11.6367
aggugggugaaucuuggcuuugaaucuccauuu	chr18:9117435-9117711(+)$1	276	199	232	14.7290
CGGAGGGGGAGGGGAGAGAGGCAACCCCUGGCU	chr3:100428749-100429007(+)$1	258	42	75	10.5267
GAAUAGCUGCUACAAGUGGGGGUAGAGGCUGAG	chr19:49843200-49843488(-)$1	288	165	198	13.4154
AAAGAGUAGGGUGGGUCUAGGCAUGUGCUUUCG	chr6:52227534-52227844(+)$1	310	85	118	15.5403
GCUCAUUGGUGCUGACGUUAAGCAGAGAUUGGC	chr19:34877711-34877979(+)$1	268	133	166	10.2699
GAGGGGGCUCCUGGAGAGAUGAGGAGCAGCAGG	chr14:73924306-73924596(-)$1	290	50	83	11.8384
AUGCAAUACGCAUUUAUUUUUGUGUGUGUUUGU	chr3:9472611-9472874(+)$1	263	217	250	13.5853
GGGUAGGCUUUUCCAGACAUAGAAAAGACCCAC	chr7:143084284-143084574(+)$1	290	191	224	12.3325
GAAAGGAGUACCACAAUACACUGGUACUUUUUU	chr16:81522772-81523102(+)$1	330	213	246	17.5313
UUCUAGAUGGUGUGGCAAGAAUUUUGUCUAGAU	chr19:56147600-56147897(+)$1	297	146	179	11.5103
CAGUGUAGGUCUCCAUAGCUAGUGACACACAAA	chr3:15091848-15092097(-)$1	249	99	132	16.0663
AGGUGACUUUGGGGAGAUGAGUUUGGUGUUGUA	chr11:991679-991953(+)$1	274	206	239	12.6439
AUCCUAUUCUAGAGUCCAUAUCAACAAUAGGGU	chrM:2786-2995(+)$1	209	161	194	11.8713
GAGUUUUUGAAGAUUCACUUCACUUUAAAGGCC	chr22:23535111-23535366(+)$1	255	163	196	13.0635
GAAGGAGGGGCCAAUCCAAUCUGCACCCUCCCU	chr16:67204990-67205240(+)$1	250	14	47	15.1214
AGGGUGAUGUCCUGGUGCCAAGGGACAGUGCUG	chr17:79544178-79544462(-)$1	284	108	141	12.4497
UCAGUAGAUAGUAUUUUGCAGAACAAUUUACUU	chr1:65724913-65725233(+)$1	320	76	109	12.0334
GUUUGGAAAGGGUGAGUUAGAAUAUGUUCCAAG	chr17:40853444-40853714(-)$1	270	205	238	17.1857
gauuggcugggcaguuuuauauacccagcugag	chr1:44698741-44699015(-)$1	274	172	205	17.2028
GGGAGAGUGGGCCCAGAACUUGGUCAGGCUCAU	chr11:2707047-2707266(-)$1	219	98	131	14.2448
GAUGAGGCCCGGCAGGCCGAGGCUGGGGCUCCU	chr22:20935036-20935280(+)$1	244	174	207	14.7094
GCUGCGCCGAAAUGACUGAGGAUGAGGUCAGAC	chr12:109124206-109124496(-)$1	290	169	202	15.8950
GGCAAGGCAUUGUGGCAAGCAGCACUGCCGCUG	chr20:49191535-49191836(+)$1	301	159	192	13.7352
cuguugucucaugaaguuucccaacaaccagug	chr15:66906666-66906940(+)$1	274	36	69	14.9237
aggcagcuguuuuacaucauggaaacaguagag	chr8:130493716-130493996(-)$1	280	169	202	12.9672
GAAGUAAACAGUUUUGUUGUUGACUUGUUGCUA	chrX:41194443-41194687(+)$1	244	145	178	12.6694
GCUUUGAAGGUGCUAACAACUUGCUAGUCACAC	chr4:10116259-10116527(-)$1	268	98	131	13.4868
augcugugggaugggauauuggcauugagcagg	chr10:35694148-35694418(+)$1	270	21	54	11.1812
AACAGACUCUGGGAUCUGUGUCCCCAGAGUCUA	chr3:48642303-48642584(-)$1	281	225	258	14.7942
UGUGCAAGUAAacagaaagaagugagcuaugcu	chr7:127723516-127723844(+)$1	328	119	152	16.5230
GGUGUCAGGAGGCCAGAGCAAGCCUUGUGAGCC	chr22:19493466-19493737(+)$1	271	15	48	15.0429
GGGACUGGAGGGUGUGAGGCAACCAGGGGGUGC	chr7:5636512-5636785(+)$1	273	115	148	16.1073
GUGGAGGGUGUGCAUCUGAGUUGUUAAGCCUGG	chr11:2714340-2714595(-)$1	255	77	110	11.5816
gugaccagagcauuuagagggcuggucugguug	chr7:155505677-155505937(+)$1	260	143	176	13.1350
CCCCGCGGCGGCCGAGGAAGAGGCGCACCGGGG	chr17:1465194-1465494(-)$1	300	217	250	14.5593
gcuguggaagguugagcguuagacagucagggu	chr10:72514369-72514624(+)$1	255	186	219	15.9436
gggauggagggggauguggaaccuaaucggcug	chr8:11665544-11665812(+)$1	268	15	48	14.8739
UGAGGUAUGAAAUGGCAAAAGGauucauuuauu	chr11:126140156-126140473(+)$1	317	43	76	15.2236

#DB
))))))(((((((........))).)))).(((	chr10:101164372-101164670(-)$1	1	150	183	12.5857
..((((.((((.(........).))))))))..	chr11:65192556-65192790(+)$1	1	66	99	14.8784
(((((((...(((........)))....)))))	chr4:10108870-10109136(-)$1	1	111	144	17.6626
.((.((..(((((........))))).)).)).	chr22:22121585-22121839(-)$1	1	85	118	13.4124
((.((((..............))))..))))))	chr7:120836198-120836486(+)$1	1	150	183	12.0477
...((((((((((........)))).)))))))	chr21:39449734-39450003(-)$1	1	185	218	14.5305
(((..((..((((..........)))).)).))	chr16:81580656-81580968(+)$1	1	259	292	10.3290
(((.(((((((((.........))....)))))	chr22:42275774-42276028(+)$1	1	123	156	12.2740
((((((...((((........))))..))))).	chr10:72509038-72509270(+)$1	1	66	99	14.5701
(((.((((.((((........))))..))))..	chr12:54811947-54812203(-)$1	1	72	105	14.2637
((...((((((((........)))).)))))).	chr11:2711454-2711726(-)$1	1	114	147	12.8407
(.(((((..............)))))...).))	chr7:32561141-32561501(+)$1	1	152	185	11.0740
(((((((((..((.......))..)))))))))	chr2:145270226-145270503(-)$1	1	161	194	11.7626
..(((((((..((........))..))).))))	chr11:992110-992382(+)$1	1	140	173	15.2791
...((.(((.(.........).)))...)))))	chr2:145271736-145271989(-)$1	1	117	150	11.6367
(((((((.((.((........)).)))))))))	chr18:9117435-9117711(+)$1	1	199	232	14.7290
(((.(((((..(.........)..)))))..))	chr3:100428749-100429007(+)$1	1	42	75	10.5267
...(((((.((((........)))).)))))..	chr19:49843200-49843488(-)$1	1	165	198	13.4154
..((((((..(((........))).))))))..	chr6:52227534-52227844(+)$1	1	85	118	15.5403
(((.(((..((((.......))))..))).)))	chr19:34877711-34877979(+)$1	1	133	166	10.2699
...(..((((((.........))))))..)...	chr14:73924306-73924596(-)$1	1	50	83	11.8384
.)))(((((((((........))))))))))))	chr3:9472611-9472874(+)$1	1	217	250	13.5853
((((.((((((((........)))))).)).))	chr7:143084284-143084574(+)$1	1	191	224	12.3325
(((((((((((((........))))))))))))	chr16:81522772-81523102(+)$1	1	213	246	17.5313
.(((((((((.((.......)).))))))))).	chr19:56147600-56147897(+)$1	1	146	179	11.5103
(..(((..(((.(........).)))..)))..	chr3:15091848-15092097(-)$1	1	99	132	16.0663
....(((.(((((........))))).)))...	chr11:991679-991953(+)$1	1	206	239	12.6439
((((((((...((.......))...))))))))	chrM:2786-2995(+)$1	1	161	194	11.8713
(.((((((((((..........)))))))))))	chr22:23535111-23535366(+)$1	1	163	196	13.0635
.(.((((((..((........))..)))))).)	chr16:67204990-67205240(+)$1	1	14	47	15.1214
..(((..((((((........))))))..))).	chr17:79544178-79544462(-)$1	1	108	141	12.4497
..(((((((.((..........)).))))))))	chr1:65724913-65725233(+)$1	1	76	109	12.0334
.(((((((...((........))...)))))))	chr17:40853444-40853714(-)$1	1	205	238	17.1857
..(((((((((.(........).))))))))).	chr1:44698741-44699015(-)$1	1	172	205	17.2028
(((.((((.((((........))))..)))).)	chr11:2707047-2707266(-)$1	1	98	131	14.2448
((.(((.((((((........)))))).))).)	chr22:20935036-20935280(+)$1	1	174	207	14.7094
((((.(((...((........))..)))))).)	chr12:109124206-109124496(-)$1	1	169	202	15.8950
)))))((((.(((........))).))))((((	chr20:49191535-49191836(+)$1	1	159	192	13.7352
..(((((....((........)))))))..)))	chr15:66906666-66906940(+)$1	1	36	69	14.9237
.(((.((((((((........))))))))...)	chr8:130493716-130493996(-)$1	1	169	202	12.9672
(((((((..((((........))))..))))).	chrX:41194443-41194687(+)$1	1	145	178	12.6694
(...(((....((.........))...)))..)	chr4:10116259-10116527(-)$1	1	98	131	13.4868
((.((((..((((.........))))..)))).	chr10:35694148-35694418(+)$1	1	21	54	11.1812
...((((((((((.........)))))))))).	chr3:48642303-48642584(-)$1	1	225	258	14.7942
.(.((((((..((........))..))).))).	chr7:127723516-127723844(+)$1	1	119	152	16.5230
(((.(((.(((((........))))).))))))	chr22:19493466-19493737(+)$1	1	15	48	15.0429
((((((....(((........)))....))).)	chr7:5636512-5636785(+)$1	1	115	148	16.1073
(...(((.(..(((.......)))..).)))..	chr11:2714340-2714595(-)$1	1	77	110	11.5816
(((((((((.((..........)).))))))))	chr7:155505677-155505937(+)$1	1	143	176	13.1350
))))))))))(((........)))((.((.(..	chr17:1465194-1465494(-)$1	1	217	250	14.5593
(((.(((...(((........)))..))).)))	chr10:72514369-72514624(+)$1	1	186	219	15.9436
.((.(.((..(((........)))..)).))).	chr8:11665544-11665812(+)$1	1	15	48	14.8739
(((...(((((.(........).))))))))))	chr11:126140156-126140473(+)$1	1	43	76	15.2236

#PSSM
" : 0.15	b : 0.11	h : 0.07	i : 0.07	[ : 0.07	= : 0.07	! : 0.07	c : 0.05	d : 0.05	g : 0.05	e : 0.03	$ : 0.03	a : 0.01	o : 0.01	f : 0.01	# : 0.01	% : 0.01	F : 0.01	
" : 0.16	c : 0.11	i : 0.09	b : 0.07	= : 0.07	! : 0.07	h : 0.05	d : 0.05	e : 0.05	a : 0.05	[ : 0.03	g : 0.03	$ : 0.03	f : 0.01	% : 0.01	F : 0.01	
" : 0.13	c : 0.13	e : 0.11	d : 0.09	i : 0.09	[ : 0.09	= : 0.09	h : 0.05	g : 0.05	b : 0.03	$ : 0.03	f : 0.03	! : 0.01	
[ : 0.16	c : 0.15	= : 0.11	e : 0.09	d : 0.07	i : 0.07	f : 0.07	" : 0.07	g : 0.05	h : 0.03	! : 0.01	b : 0.01	a : 0.01	$ : 0.01	
c : 0.20	d : 0.11	e : 0.11	= : 0.11	i : 0.09	g : 0.07	f : 0.05	[ : 0.05	h : 0.03	b : 0.03	! : 0.03	" : 0.03	a : 0.01	
c : 0.20	d : 0.15	e : 0.11	= : 0.11	i : 0.09	g : 0.07	b : 0.05	f : 0.05	h : 0.03	[ : 0.03	! : 0.03	" : 0.01	
c : 0.18	d : 0.13	e : 0.11	= : 0.11	i : 0.09	f : 0.07	g : 0.07	! : 0.05	b : 0.05	[ : 0.03	" : 0.01	h : 0.01	# : 0.01	
f : 0.13	d : 0.11	! : 0.11	= : 0.11	c : 0.07	[ : 0.07	i : 0.07	" : 0.05	g : 0.05	e : 0.05	# : 0.05	w : 0.03	h : 0.01	b : 0.01	
" : 0.11	f : 0.11	! : 0.11	= : 0.11	e : 0.09	d : 0.07	c : 0.07	[ : 0.05	i : 0.05	# : 0.05	w : 0.03	g : 0.03	b : 0.01	h : 0.01	a : 0.01	
d : 0.22	! : 0.15	" : 0.09	e : 0.07	[ : 0.07	f : 0.07	= : 0.07	i : 0.05	# : 0.05	w : 0.03	g : 0.01	b : 0.01	c : 0.01	h : 0.01	
d : 0.20	c : 0.16	! : 0.11	e : 0.07	f : 0.07	= : 0.05	" : 0.05	w : 0.03	[ : 0.03	i : 0.03	b : 0.03	# : 0.03	g : 0.01	a : 0.01	h : 0.01	
b : 0.26	d : 0.18	c : 0.16	[ : 0.07	f : 0.07	e : 0.05	= : 0.05	w : 0.03	r : 0.01	a : 0.01	i : 0.01	h : 0.01	
b : 0.22	d : 0.18	c : 0.16	a : 0.07	e : 0.05	r : 0.05	f : 0.05	s : 0.05	w : 0.03	= : 0.03	i : 0.01	h : 0.01	
q : 0.66	r : 0.13	s : 0.07	p : 0.07	w : 0.03	c : 0.01	
q : 0.66	r : 0.13	p : 0.09	s : 0.07	w : 0.03	
q : 0.66	r : 0.13	p : 0.09	s : 0.07	w : 0.03	
q : 0.66	r : 0.13	p : 0.09	s : 0.07	w : 0.03	
q : 0.66	r : 0.13	p : 0.09	s : 0.07	w : 0.03	
q : 0.66	r : 0.13	p : 0.09	s : 0.07	w : 0.03	
q : 0.66	r : 0.13	p : 0.09	s : 0.07	w : 0.03	
q : 0.66	r : 0.11	s : 0.07	b : 0.05	w : 0.03	a : 0.01	d : 0.01	p : 0.01	
b : 0.18	c : 0.16	d : 0.16	a : 0.09	e : 0.07	s : 0.07	r : 0.07	f : 0.07	] : 0.01	i : 0.01	= : 0.01	h : 0.01	
b : 0.20	c : 0.18	d : 0.18	] : 0.09	e : 0.07	f : 0.07	= : 0.05	2 : 0.03	s : 0.01	i : 0.01	3 : 0.01	h : 0.01	
d : 0.22	c : 0.20	e : 0.11	2 : 0.11	b : 0.07	f : 0.07	i : 0.05	= : 0.05	3 : 0.03	] : 0.01	h : 0.01	
d : 0.20	2 : 0.15	e : 0.13	] : 0.09	= : 0.07	f : 0.07	4 : 0.05	i : 0.05	3 : 0.05	c : 0.03	b : 0.03	h : 0.01	
2 : 0.16	e : 0.13	f : 0.11	d : 0.09	= : 0.09	c : 0.07	i : 0.07	4 : 0.05	] : 0.05	3 : 0.05	b : 0.03	g : 0.01	h : 0.01	
2 : 0.13	f : 0.13	d : 0.09	= : 0.09	c : 0.09	e : 0.07	i : 0.07	4 : 0.05	] : 0.05	3 : 0.05	g : 0.05	h : 0.01	a : 0.01	[ : 0.01	b : 0.01	
c : 0.15	d : 0.11	e : 0.11	i : 0.09	= : 0.09	] : 0.07	2 : 0.07	4 : 0.05	b : 0.05	f : 0.05	g : 0.05	3 : 0.03	h : 0.01	
c : 0.18	d : 0.13	i : 0.13	b : 0.09	= : 0.09	g : 0.07	e : 0.07	f : 0.05	] : 0.05	2 : 0.05	3 : 0.01	h : 0.01	
c : 0.18	d : 0.13	i : 0.13	= : 0.09	g : 0.07	] : 0.05	f : 0.05	b : 0.05	e : 0.05	a : 0.05	2 : 0.03	: : 0.01	3 : 0.01	[ : 0.01	
c : 0.18	d : 0.15	i : 0.11	= : 0.09	f : 0.07	g : 0.07	b : 0.05	] : 0.05	e : 0.05	2 : 0.03	3 : 0.03	H : 0.01	5 : 0.01	a : 0.01	
i : 0.11	c : 0.11	d : 0.09	2 : 0.09	= : 0.09	] : 0.09	b : 0.07	g : 0.07	3 : 0.05	f : 0.05	e : 0.05	7 : 0.01	H : 0.01	5 : 0.01	o : 0.01	
c : 0.11	d : 0.09	] : 0.09	2 : 0.09	3 : 0.07	i : 0.07	b : 0.07	g : 0.05	= : 0.05	f : 0.05	: : 0.03	e : 0.03	5 : 0.03	a : 0.03	7 : 0.01	H : 0.01	o : 0.01	

#score	729.6639742671999
#seq	53
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_UTR_m3_run2.txt

#BEAR
ddddqqqqqqqqddd	chr5:175954475-175954707(-)$1	232	156	171	13.9957
eeeeqqqqqqqqeee	chr19:18718196-18718520(+)$1	324	61	76	13.1664
ddddqqqqqqqqddd	chr14:69255960-69256292(-)$1	332	176	191	13.9957
eeeeqqqqqqqqeee	chr9:139942702-139942950(-)$1	248	177	192	13.1664
ddddqqqqqqqqddd	chr9:35829379-35829734(+)$1	355	210	225	13.9957
ddddqqqqqqqqddd	chr19:17452753-17453061(+)$1	308	32	47	13.9957
ddddqqqqqqqqddd	chr12:53845978-53846224(+)$1	246	12	27	13.9957
b[bbqqqqqqqqbb]	chr17:36891420-36891662(-)$1	242	114	129	12.0327
ddddqqqqqqqqddd	chr6:30655822-30656120(-)$1	298	5	20	13.9957
ffffqqqqqqqqfff	chr2:159314551-159314820(+)$1	269	8	23	11.9185
d[bbqqqqqqqqbb2	chrX:133930838-133931161(-)$1	323	143	158	12.2412
ddddqqqqqqqqddd	chr10:43892125-43892451(-)$1	326	118	133	13.9957
:cccqqqqqqqqccc	chr16:604335-604586(+)$1	251	116	131	12.4729
[cccqqqqqqqqccc	chr1:211433066-211433433(+)$1	367	254	269	13.2914
bcccqqqqqqqqccc	chr2:68479239-68479494(-)$1	255	155	170	13.0803
eeeeqqqqqqqqeee	chr1:38462701-38462980(-)$1	279	71	86	13.1664
ddddqqqqqqqqddd	chr10:104378887-104379175(+)$1	288	55	70	13.9957
eeeeqqqqqqqqeee	chr10:5024287-5024570(+)$1	283	145	160	13.1664
ddddqqqqqqqqddd	chr8:22432282-22432528(+)$1	246	42	57	13.9957
eeeeqqqqqqqqeee	chr17:79686872-79687136(+)$1	264	118	133	13.1664
ddddqqqqqqqqddd	chr12:58005535-58005830(+)$1	295	198	213	13.9957
eeeeqqqqqqqqeee	chr19:35532938-35533229(+)$1	291	122	137	13.1664
:cccqqqqqqqqccc	chr11:2159642-2159867(-)$1	225	54	69	12.4729
ddddqqqqqqqqddd	chr7:1028464-1028702(+)$1	238	221	236	13.9957
dd[aqqqqqqqqa]d	chr1:2241187-2241457(+)$1	270	83	98	13.1278
$cccqqqqqqqqccc	chr11:828321-828680(+)$1	359	124	139	13.0279
ddddqqqqqqqqddd	chr2:242756716-242756994(+)$1	278	56	71	13.9957
##bbqqqqqqqqbb4	chr12:7024632-7024878(+)$1	246	153	168	12.0525
ddddqqqqqqqqddd	chr2:200322391-200322648(-)$1	257	57	72	13.9957
ddddqqqqqqqqddd	chr14:24615887-24616142(-)$1	255	162	177	13.9957
eeeeqqqqqqqqeee	chr1:2240867-2241158(+)$1	291	182	197	13.1664
[cccqqqqqqqqccc	chr1:28563230-28563481(+)$1	251	163	178	13.2914
Ecccqqqqqqqqccc	chr3:47454406-47454648(+)$1	242	162	177	12.4952
Fcccqqqqqqqqccc	chr11:2160231-2160449(-)$1	218	157	172	12.8913
bb[aqqqqqqqqa]b	chr3:47451639-47451859(+)$1	220	121	136	11.7622
:cccqqqqqqqqccc	chr11:2159632-2159839(-)$1	207	26	41	12.4729
hcccqqqqqqqqccc	chr11:2160440-2160652(-)$1	212	32	47	13.0776
ecccqqqqqqqqccc	chr1:160061080-160061360(-)$1	280	194	209	13.3891
!!bbqqqqqqqqbb2	chr3:38454988-38455323(+)$1	335	254	269	12.1403
eeeeqqqqqqqqeee	chr14:69256415-69256669(-)$1	254	62	77	13.1664
c[bbqqqqqqqqbb]	chr8:22432328-22432621(+)$1	293	84	99	12.2530
eeeeqqqqqqqqeee	chr10:5024401-5024669(+)$1	268	31	46	13.1664
ddddqqqqqqqqddd	chr14:24615942-24616259(-)$1	317	279	294	13.9957
iiiiqqqqqqqqiii	chr16:29910392-29910655(-)$1	263	149	164	12.6411
ddddqqqqqqqqddd	chr19:47503794-47504049(+)$1	255	211	226	13.9957
ffffqqqqqqqqfff	chr2:172016835-172017095(-)$1	260	76	91	11.9185
ddddqqqqqqqqddd	chr16:2577649-2577889(+)$1	240	39	54	13.9957
ddddqqqqqqqqddd	chr7:100075517-100075784(-)$1	267	137	152	13.9957
e[bbqqqqqqqqbb]	chr11:2159782-2159992(-)$1	210	127	142	12.3416
c!!aqqqqqqqqa22	chr21:45880641-45880974(+)$1	333	90	105	12.2618
ddddqqqqqqqqddd	chr3:184097783-184098070(+)$1	287	202	217	13.9957
ddddqqqqqqqqddd	chr17:40947162-40947441(+)$1	279	146	161	13.9957
ddddqqqqqqqqddd	chr5:175958504-175958729(-)$1	225	151	166	13.9957
e[bbqqqqqqqqbb]	chr11:2159708-2159952(-)$1	244	87	102	12.3416
ddddqqqqqqqqddd	chr7:100172519-100172798(-)$1	279	68	83	13.9957
!cccqqqqqqqqccc	chr10:43892003-43892272(-)$1	269	206	221	13.3541
:cccqqqqqqqqccc	chr11:2159692-2159908(-)$1	216	95	110	12.4729
eeeeqqqqqqqqeee	chr19:48957806-48958088(+)$1	282	188	203	13.1664
eeeeqqqqqqqqeee	chr2:242694520-242694828(+)$1	308	134	149	13.1664
ddddqqqqqqqqddd	chr2:204305420-204305739(-)$1	319	172	187	13.9957
ddddqqqqqqqqddd	chr2:204305549-204305783(-)$1	234	216	231	13.9957
eeeeqqqqqqqqeee	chr19:36258531-36258816(+)$1	285	95	110	13.1664
""bbqqqqqqqqbb3	chr3:47451903-47452166(+)$1	263	186	201	12.1171
!cccqqqqqqqqccc	chr16:87734511-87734745(-)$1	234	59	74	13.3541
ggggqqqqqqqqggg	chr11:46398658-46398928(+)$1	270	91	106	12.6098

#otherMatches

#Seq PSSM
GAGAACCCAAAGUCU	chr5:175954475-175954707(-)$1	232	156	171	13.9957
GGAGUCCCUCGCCUU	chr19:18718196-18718520(+)$1	324	61	76	13.1664
GCACCUCAGAAUGUG	chr14:69255960-69256292(-)$1	332	176	191	13.9957
CCCGCUUCAGCCUGG	chr9:139942702-139942950(-)$1	248	177	192	13.1664
ggcccccaucccggc	chr9:35829379-35829734(+)$1	355	210	225	13.9957
GUAGUUUUUUAUUUA	chr19:17452753-17453061(+)$1	308	32	47	13.9957
GGGGUCUCUUUCccc	chr12:53845978-53846224(+)$1	246	12	27	13.9957
GCAGACACCAUCCUC	chr17:36891420-36891662(-)$1	242	114	129	12.0327
GGCACUGUUACUUGC	chr6:30655822-30656120(-)$1	298	5	20	13.9957
GUUGGCUGAGUGCGA	chr2:159314551-159314820(+)$1	269	8	23	11.9185
AGGGGAGAAGCACCG	chrX:133930838-133931161(-)$1	323	143	158	12.2412
GAGGCGCCCUUCCCU	chr10:43892125-43892451(-)$1	326	118	133	13.9957
CCCACUCCCCUUUGG	chr16:604335-604586(+)$1	251	116	131	12.4729
UGAUAUCUUCCCAUC	chr1:211433066-211433433(+)$1	367	254	269	13.2914
ccgccgUUUCCUGCG	chr2:68479239-68479494(-)$1	255	155	170	13.0803
CAGGGCCCCAAACCU	chr1:38462701-38462980(-)$1	279	71	86	13.1664
GCAGAUGUCACAUUG	chr10:104378887-104379175(+)$1	288	55	70	13.9957
AGGUGUCUCACGACC	chr10:5024287-5024570(+)$1	283	145	160	13.1664
UCCUCCUUCCCCAGG	chr8:22432282-22432528(+)$1	246	42	57	13.9957
CCUGUCUCCCUCCAG	chr17:79686872-79687136(+)$1	264	118	133	13.1664
GCUGGCAAAAUGCGG	chr12:58005535-58005830(+)$1	295	198	213	13.9957
acuuaugauuucagg	chr19:35532938-35533229(+)$1	291	122	137	13.1664
cgcccucucuucggc	chr11:2159642-2159867(-)$1	225	54	69	12.4729
CCUGCCAGCCCCCAG	chr7:1028464-1028702(+)$1	238	221	236	13.9957
ccccuccucccUGUG	chr1:2241187-2241457(+)$1	270	83	98	13.1278
UGGUCCCACCUUGCC	chr11:828321-828680(+)$1	359	124	139	13.0279
AUUGAUCACCCCCAG	chr2:242756716-242756994(+)$1	278	56	71	13.9957
UUGACCUUCUCCUCU	chr12:7024632-7024878(+)$1	246	153	168	12.0525
CGCGUUUCCUCCCGC	chr2:200322391-200322648(-)$1	257	57	72	13.9957
CCGCCUCUCCUAGUG	chr14:24615887-24616142(-)$1	255	162	177	13.9957
AAACCCAUGUGCGUU	chr1:2240867-2241158(+)$1	291	182	197	13.1664
CAGCACGCCUUAGCU	chr1:28563230-28563481(+)$1	251	163	178	13.2914
AGCAUAACUUUCUGC	chr3:47454406-47454648(+)$1	242	162	177	12.4952
CGCUCCCCCUCCAGC	chr11:2160231-2160449(-)$1	218	157	172	12.8913
CCUGCCUACACACCG	chr3:47451639-47451859(+)$1	220	121	136	11.7622
cgcccucucuucggc	chr11:2159632-2159839(-)$1	207	26	41	12.4729
CGCCUGCUCUCCGGC	chr11:2160440-2160652(-)$1	212	32	47	13.0776
UUUCUAAAAUGUGAA	chr1:160061080-160061360(-)$1	280	194	209	13.3891
CUAUGCCCACAGAUC	chr3:38454988-38455323(+)$1	335	254	269	12.1403
GGACAGCCCCACGUC	chr14:69256415-69256669(-)$1	254	62	77	13.1664
AUUCCCACCCACGAC	chr8:22432328-22432621(+)$1	293	84	99	12.2530
AGGUGUCUCACGACC	chr10:5024401-5024669(+)$1	268	31	46	13.1664
CCGCCUCUCCUAGUG	chr14:24615942-24616259(-)$1	317	279	294	13.9957
CCCUCCAUCCCAAGG	chr16:29910392-29910655(-)$1	263	149	164	12.6411
CUUGAACAAAACCAA	chr19:47503794-47504049(+)$1	255	211	226	13.9957
CGCCAUGACGGAGGC	chr2:172016835-172017095(-)$1	260	76	91	11.9185
CCAGAUGCCCAGCUG	chr16:2577649-2577889(+)$1	240	39	54	13.9957
GAAGAAGAGUAGUUU	chr7:100075517-100075784(-)$1	267	137	152	13.9957
CUGUUCUCUCCCGCU	chr11:2159782-2159992(-)$1	210	127	142	12.3416
augcuaaccccugac	chr21:45880641-45880974(+)$1	333	90	105	12.2618
cggcccccucccgcc	chr3:184097783-184098070(+)$1	287	202	217	13.9957
CUAGUCCCCUCCCUA	chr17:40947162-40947441(+)$1	279	146	161	13.9957
AGGCUUCCCCUUGCC	chr5:175958504-175958729(-)$1	225	151	166	13.9957
CUGUUCUCUCCCGCU	chr11:2159708-2159952(-)$1	244	87	102	12.3416
GGCCCCAAAAUCGGC	chr7:100172519-100172798(-)$1	279	68	83	13.9957
CCCACCACCACUUGG	chr10:43892003-43892272(-)$1	269	206	221	13.3541
cgcccucucuucggc	chr11:2159692-2159908(-)$1	216	95	110	12.4729
AAUCCACCCCCAGGU	chr19:48957806-48958088(+)$1	282	188	203	13.1664
GUGGCCCACCCACCA	chr2:242694520-242694828(+)$1	308	134	149	13.1664
UGUGACCAUCCCCGC	chr2:204305420-204305739(-)$1	319	172	187	13.9957
UGUGACCAUCCCCGC	chr2:204305549-204305783(-)$1	234	216	231	13.9957
GGAUCUCCGAAAGUC	chr19:36258531-36258816(+)$1	285	95	110	13.1664
ACAGCACCACUUCUC	chr3:47451903-47452166(+)$1	263	186	201	12.1171
CUUUUUUUCAACAAA	chr16:87734511-87734745(-)$1	234	59	74	13.3541
CACCCACGCCCCGGU	chr11:46398658-46398928(+)$1	270	91	106	12.6098

#DB
((((........)))	chr5:175954475-175954707(-)$1	1	156	171	13.9957
((((........)))	chr19:18718196-18718520(+)$1	1	61	76	13.1664
((((........)))	chr14:69255960-69256292(-)$1	1	176	191	13.9957
((((........)))	chr9:139942702-139942950(-)$1	1	177	192	13.1664
((((........)))	chr9:35829379-35829734(+)$1	1	210	225	13.9957
((((........)))	chr19:17452753-17453061(+)$1	1	32	47	13.9957
((((........)))	chr12:53845978-53846224(+)$1	1	12	27	13.9957
(.((........)).	chr17:36891420-36891662(-)$1	1	114	129	12.0327
((((........)))	chr6:30655822-30656120(-)$1	1	5	20	13.9957
((((........)))	chr2:159314551-159314820(+)$1	1	8	23	11.9185
(.((........)).	chrX:133930838-133931161(-)$1	1	143	158	12.2412
((((........)))	chr10:43892125-43892451(-)$1	1	118	133	13.9957
.(((........)))	chr16:604335-604586(+)$1	1	116	131	12.4729
.(((........)))	chr1:211433066-211433433(+)$1	1	254	269	13.2914
((((........)))	chr2:68479239-68479494(-)$1	1	155	170	13.0803
((((........)))	chr1:38462701-38462980(-)$1	1	71	86	13.1664
((((........)))	chr10:104378887-104379175(+)$1	1	55	70	13.9957
((((........)))	chr10:5024287-5024570(+)$1	1	145	160	13.1664
((((........)))	chr8:22432282-22432528(+)$1	1	42	57	13.9957
((((........)))	chr17:79686872-79687136(+)$1	1	118	133	13.1664
((((........)))	chr12:58005535-58005830(+)$1	1	198	213	13.9957
((((........)))	chr19:35532938-35533229(+)$1	1	122	137	13.1664
.(((........)))	chr11:2159642-2159867(-)$1	1	54	69	12.4729
((((........)))	chr7:1028464-1028702(+)$1	1	221	236	13.9957
((.(........).)	chr1:2241187-2241457(+)$1	1	83	98	13.1278
.(((........)))	chr11:828321-828680(+)$1	1	124	139	13.0279
((((........)))	chr2:242756716-242756994(+)$1	1	56	71	13.9957
..((........)).	chr12:7024632-7024878(+)$1	1	153	168	12.0525
((((........)))	chr2:200322391-200322648(-)$1	1	57	72	13.9957
((((........)))	chr14:24615887-24616142(-)$1	1	162	177	13.9957
((((........)))	chr1:2240867-2241158(+)$1	1	182	197	13.1664
.(((........)))	chr1:28563230-28563481(+)$1	1	163	178	13.2914
)(((........)))	chr3:47454406-47454648(+)$1	1	162	177	12.4952
)(((........)))	chr11:2160231-2160449(-)$1	1	157	172	12.8913
((.(........).)	chr3:47451639-47451859(+)$1	1	121	136	11.7622
.(((........)))	chr11:2159632-2159839(-)$1	1	26	41	12.4729
((((........)))	chr11:2160440-2160652(-)$1	1	32	47	13.0776
((((........)))	chr1:160061080-160061360(-)$1	1	194	209	13.3891
..((........)).	chr3:38454988-38455323(+)$1	1	254	269	12.1403
((((........)))	chr14:69256415-69256669(-)$1	1	62	77	13.1664
(.((........)).	chr8:22432328-22432621(+)$1	1	84	99	12.2530
((((........)))	chr10:5024401-5024669(+)$1	1	31	46	13.1664
((((........)))	chr14:24615942-24616259(-)$1	1	279	294	13.9957
((((........)))	chr16:29910392-29910655(-)$1	1	149	164	12.6411
((((........)))	chr19:47503794-47504049(+)$1	1	211	226	13.9957
((((........)))	chr2:172016835-172017095(-)$1	1	76	91	11.9185
((((........)))	chr16:2577649-2577889(+)$1	1	39	54	13.9957
((((........)))	chr7:100075517-100075784(-)$1	1	137	152	13.9957
(.((........)).	chr11:2159782-2159992(-)$1	1	127	142	12.3416
(..(........)..	chr21:45880641-45880974(+)$1	1	90	105	12.2618
((((........)))	chr3:184097783-184098070(+)$1	1	202	217	13.9957
((((........)))	chr17:40947162-40947441(+)$1	1	146	161	13.9957
((((........)))	chr5:175958504-175958729(-)$1	1	151	166	13.9957
(.((........)).	chr11:2159708-2159952(-)$1	1	87	102	12.3416
((((........)))	chr7:100172519-100172798(-)$1	1	68	83	13.9957
.(((........)))	chr10:43892003-43892272(-)$1	1	206	221	13.3541
.(((........)))	chr11:2159692-2159908(-)$1	1	95	110	12.4729
((((........)))	chr19:48957806-48958088(+)$1	1	188	203	13.1664
((((........)))	chr2:242694520-242694828(+)$1	1	134	149	13.1664
((((........)))	chr2:204305420-204305739(-)$1	1	172	187	13.9957
((((........)))	chr2:204305549-204305783(-)$1	1	216	231	13.9957
((((........)))	chr19:36258531-36258816(+)$1	1	95	110	13.1664
..((........)).	chr3:47451903-47452166(+)$1	1	186	201	12.1171
.(((........)))	chr16:87734511-87734745(-)$1	1	59	74	13.3541
((((........)))	chr11:46398658-46398928(+)$1	1	91	106	12.6098

#PSSM
d : 0.40	e : 0.23	: : 0.06	b : 0.04	! : 0.04	f : 0.03	[ : 0.03	c : 0.03	$ : 0.01	# : 0.01	E : 0.01	F : 0.01	h : 0.01	i : 0.01	" : 0.01	g : 0.01	
d : 0.38	c : 0.21	e : 0.18	[ : 0.07	f : 0.03	! : 0.03	# : 0.01	b : 0.01	i : 0.01	" : 0.01	g : 0.01	
d : 0.36	c : 0.21	e : 0.18	b : 0.12	f : 0.03	[ : 0.03	i : 0.01	! : 0.01	g : 0.01	
d : 0.36	c : 0.21	e : 0.18	b : 0.12	a : 0.04	f : 0.03	i : 0.01	g : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.36	c : 0.21	e : 0.18	b : 0.12	a : 0.04	f : 0.03	i : 0.01	g : 0.01	
d : 0.36	c : 0.21	e : 0.18	b : 0.12	f : 0.03	] : 0.03	i : 0.01	2 : 0.01	g : 0.01	
d : 0.38	c : 0.21	e : 0.18	] : 0.06	2 : 0.04	f : 0.03	4 : 0.01	b : 0.01	i : 0.01	3 : 0.01	g : 0.01	

#score	858.7999354608189
#seq	65
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_CDS_m1_run1.txt

#BEAR
bb[eeeee"""dddd[ccclllccc]dddd333eeeee]	chr14:53175053-53175346(+)$1	293	21	60	11.3152
c[a[ddddffffff[cccmmmmccc333ffffff]dddd	chr16:67985064-67985326(-)$1	262	149	188	13.9718
[eeeee!!bb[ccc[cccmmmmccc22cccbb22eeeee	chr16:89857819-89858078(-)$1	259	25	64	13.7603
fff[ggggggg"""ddddmmmmdddd333ggggggg333	chr1:229438465-229438736(+)$1	271	66	105	15.8003
cc$$$$$ffffff!!cccmmmmccc22ffffff333ccc	chr12:57535055-57535299(+)$1	244	78	117	14.5988
dd[ccc[a[ccc[aooooooa]ccc]a]cccddddffff	chr1:19448385-19448604(-)$1	219	58	97	11.1184
)))dddd!!iiiiiiiiimmmmiiiiiiiii333ddddh	chr7:23561882-23562147(-)$1	265	99	138	12.2970
####hhhhhhhh[a[cccmmmmccc]a22hhhhhhhhcc	chr9:117029712-117029937(+)$1	225	58	97	13.6406
h$$$$$iiiiiiiii!!ammmma22iiiiiiiii>>>>>	chr9:107594920-107595175(-)$1	255	49	88	12.6939
eeeeeeeee####cccooooooccc22eeeee22eeeee	chr20:60734896-60735161(+)$1	265	34	73	11.7382
hhh####gggggggddddmmmmdddd]ggggggghhhhh	chrX:41201592-41201965(+)$1	373	140	179	12.9592
cc$$$$$ddddgggggggmmmmggggggg]dddd333cc	chr19:2220006-2220246(+)$1	240	76	115	12.4283
[bb!!dddd"""addddmmmmdddd]a4444dddd]bb]	chr20:61460925-61461132(+)$1	207	84	123	11.7525
dd[a!!iiiiiiiiirrrrrrrrriiiiiiiii22a22d	chr9:116958168-116958392(+)$1	224	49	88	10.9021
dddd[eeeee"""cccooooooccc333eeeee22dddd	chr9:116997823-116998032(+)$1	209	25	64	12.9871
[==========cccddddmmmmdddd666666ccc]===	chr4:1732536-1732782(+)$1	246	77	116	12.6271
effffff[bb!!bb[cccmmmmccc333bb22bbfffff	chr13:113769974-113770214(+)$1	240	184	223	12.9401
[ccc$$$$$cccaeeeeemmmmeeeee]a]ccc4444cc	chr12:124110892-124111194(-)$1	302	29	68	11.9159
:ggggggg[bb####cccmmmmccc333bb]ggggggg:	chr20:39657970-39658260(+)$1	290	48	87	14.6925
iiiiii[bb!!a"""cccmmmmccc]a22bbiiiiiiii	chr13:99092260-99092509(+)$1	249	205	244	16.1400
!=========="""ddddmmmmdddd]==========cc	chr2:128180679-128180984(+)$1	305	121	160	16.6520
c!!ccc!!ggggggg[bbmmmmbb]ggggggg22ccc22	chr16:67983693-67984011(-)$1	318	78	117	12.8304
##dddd[ffffff!!cccmmmmcccffffffdddd333i	chr22:50943455-50943688(-)$1	233	83	122	13.5816
[ddddbb[ffffff[cccmmmmccc]ffffff]bb]ddd	chr19:45150382-45150666(+)$1	284	84	123	12.4434
$ggggggg[ccc"""cccmmmmccc]ccc22ggggggg5	chr19:47491155-47491463(+)$1	308	237	276	15.2398
cc"""bb[eeeee!!bboooooobb22eeeee]bb4444	chr16:71766923-71767210(-)$1	287	93	132	10.9494
fffdddd!!dddd####aooooooa4444dddd4444dd	chr17:34883859-34884126(-)$1	267	62	101	11.0935
!!ffffff[ccc"""cccmmmmcccccc]ffffff22dd	chr1:26610816-26611083(-)$1	267	48	87	14.1917
ee[a[iiiiiiiii[cccmmmmccc]iiiiiiiii]a>>	chr22:50356192-50356456(+)$1	264	191	230	16.6725
ffffff[a[ccc"""cccmmmmccc333ccc]a]fffff	chr1:1239383-1239626(-)$1	243	4	43	15.7288
==!!bbdddd[bb!!cccmmmmccc]bbdddd22bb22=	chr9:140469102-140469327(-)$1	225	89	128	13.4084
dd"""eeeeeccceeeeemmmmeeeee4444ccc]eeee	chr15:40700004-40700299(+)$1	295	108	147	11.8604
b!!ggggggg[bb[ddddmmmmdddd]bbggggggg22b	chr10:113917016-113917274(-)$1	258	28	67	13.9231
[ccc[eeeee[bb[cccooooooccc]bb]eeeee]ccc	chr12:10871616-10871889(-)$1	273	188	227	12.5296
bbiiiiiiiii!!ddddmmmmdddd]iiiiiiiii]bbd	chr1:70705091-70705308(+)$1	217	72	111	13.2178
bb!!bb[a[eeeee[cccmmmmccc333eeeee]a]bb2	chr2:38903035-38903307(+)$1	272	66	105	14.6849
==========[bbddddnnnnndddd4444bb]======	chr1:53363003-53363256(-)$1	253	200	239	12.4030
a[bb[eeeee!!bbddddmmmmdddd]bb4444eeeee]	chr12:6879238-6879468(+)$1	230	64	103	11.9668
cc[eeeee!!bb"""ddddmmmmdddd]bbeeeee]ccc	chr6:168298785-168299019(+)$1	234	80	119	11.4448
==========[bb[cccnnnnnccc]bb]==========	chr18:21140088-21140315(-)$1	227	36	75	13.9820
============"""cccmmmmccc333===========	chr2:228399443-228399700(+)$1	257	139	178	19.1100
bbeeeee[==========mmmm==========333eeee	chr11:118892317-118892613(+)$1	296	128	167	14.4200
d!!ggggggg[ccc!!ccclllccc4444ccc]gggggg	chr1:153906105-153906441(-)$1	336	34	73	14.8729
dd[ccc"""iiiiiiiiillliiiiiiiii333ccc]dd	chr19:45160891-45161155(+)$1	264	49	88	13.0430
gccc!!iiiiiiiiiooooooiiiiiiiii22ccc]ggg	chr17:73897202-73897478(-)$1	276	6	45	12.5130
gggggg[bb[eeeeecccmmmmccc]eeeee]bb]gggg	chr17:16246133-16246397(-)$1	264	27	66	13.1583
c[ccc[ffffff!!ddddllldddd]ffffffccc]ccc	chr22:44340441-44340694(+)$1	253	170	209	11.7047
cc####ggggggg!!cccmmmmccc333gggggggccc:	chr16:89623201-89623415(+)$1	214	80	119	16.6855
dddd!!dddd"""cccooooooccc333dddddddd22b	chr7:45931428-45931653(+)$1	225	177	216	12.6154
c!!ccc!!dddd[a[cccnnnnnccc22a]dddd22ccc	chr16:70572090-70572363(+)$1	273	135	174	12.1818
Fggggggg"""ccc[cccmmmmccc]ccc]ggggggg:c	chr12:53692917-53693218(+)$1	301	240	279	14.6871
"""==========!!cccmmmmccc==========333c	chr22:50354617-50354879(+)$1	262	196	235	18.4867
:dddd!!hhhhhhhhcccmmmmccc333hhhhhhhh22d	chr17:73662495-73662754(-)$1	259	189	228	12.2434
a[ccc!!dddd####cccmmmmccc4444dddd22ccc]	chr17:37899044-37899322(+)$1	278	160	199	15.5747
$$$$bb[a!!dddd[cccmmmmccc]dddd22a]bb]bb	chr11:61045771-61045973(-)$1	202	48	87	12.5456
!!ggggggg$$$$$ddddmmmmdddd22ggggggg22bb	chr1:981427-981662(+)$1	235	175	214	13.7831
iii####bb!!ddddoooooodddd]bb333iiiiiiii	chr12:98940073-98940329(+)$1	256	212	251	11.5777

#otherMatches

#Seq PSSM
AUGAUCUGAAGGCCCUACAGAGUGUUGGGCAGGUAGGUG	chr14:53175053-53175346(+)$1	293	21	60	11.3152
GUGACAUCGUGGAGAAGCAUGGGCUGCCCUCCGCAGAUG	chr16:67985064-67985326(-)$1	262	149	188	13.9718
UGGGUGUGCACAGUCUCCUUCUGGAAUACUUGAUCACCC	chr16:89857819-89858078(-)$1	259	25	64	13.7603
UUUUUUUUUUUUAAUCUAUUUUUGGAAUCAAAGAAACAU	chr1:229438465-229438736(+)$1	271	66	105	15.8003
CCCACCCUUCUGUCUGCCCUCAGGUCCACAGAGUAAGGC	chr12:57535055-57535299(+)$1	244	78	117	14.5988
GGUGGAGUUACUCCUUUCCCGUGGUUGGUUCCUAUUUCA	chr1:19448385-19448604(-)$1	219	58	97	11.1184
AAUGUUCGUGAAGAAAUUGAAGAGUUUUUUCCAAGAAUG	chr7:23561882-23562147(-)$1	265	99	138	12.2970
CGUUUUCUUUCAGGGGCCGCCUGGUGCAGUGGGAGAACC	chr9:117029712-117029937(+)$1	225	58	97	13.6406
auuuuguaaauuuuguagugcuCCUCAAGAUUUAGUUGG	chr9:107594920-107595175(-)$1	255	49	88	12.6939
AGGUACCAGCAGAUCCUGCACCGGAACCUGGUAUACCUG	chr20:60734896-60735161(+)$1	265	34	73	11.7382
GCUUGUGCUGUUCAGGUUUGAUGAUCGUGGACGGAGUGA	chrX:41201592-41201965(+)$1	373	140	179	12.9592
ACACACAGGGUUUUCUCUCUGCAGAGGAGCACCCCCAGU	chr19:2220006-2220246(+)$1	240	76	115	12.4283
CCCUCUGGAGAGCCAGGCGUCCCUGUGAGUAUCUGCGGC	chr20:61460925-61461132(+)$1	207	84	123	11.7525
CACCUUGUCUGUGUCUUCCAGGGUGACAUGGGCUUGCCU	chr9:116958168-116958392(+)$1	224	49	88	10.9021
UUGUAACCUUCUUUGCUGGUGUGUACUUAGGGUGAACAA	chr9:116997823-116998032(+)$1	209	25	64	12.9871
GCAGCUGCAUUCAGCCUCAGCGGAGGACACGCCUGUGGU	chr4:1732536-1732782(+)$1	246	77	116	12.6271
UCCCACUACGGAUUAUCUUACUGGACAAAAGACGGGUGG	chr13:113769974-113770214(+)$1	240	184	223	12.9401
CUGCCCCUUAACCCAUUAGUAUUAAUGUGAGUUUCAAGC	chr12:124110892-124111194(-)$1	302	29	68	11.9159
CGGAGGGGUUAAAGUGGCUGUUGUUUGAUAUUCUCUCCU	chr20:39657970-39658260(+)$1	290	48	87	14.6925
UGGCCAGCAGCCCCCCUGACAACAGUGAGUGUGGCCAGG	chr13:99092260-99092509(+)$1	249	205	244	16.1400
UGGGGGCGCGGCACCAGCACCAGCUGCCCGCGCCCUCCC	chr2:128180679-128180984(+)$1	305	121	160	16.6520
CGGCCUGAGCCCCCAAGGCGGGCCCUGGGGGUGAGGGAG	chr16:67983693-67984011(-)$1	318	78	117	12.8304
CGACCUUGGGUCCUUGCCCACAGGUGGACCCAGGUGCGG	chr22:50943455-50943688(-)$1	233	83	122	13.5816
CUGACACCUUCUCUUCGGUUCUCCGCAGGGGACGUCGUC	chr19:45150382-45150666(+)$1	284	84	123	12.4434
UGUCUGUGGGGCUUCGGAGCACUCCUGCCAGCACAGACC	chr19:47491155-47491463(+)$1	308	237	276	15.2398
GAUUCUGGAGAUUUCAUUUCAGUAUAUAAUUUGCACUUC	chr16:71766923-71767210(-)$1	287	93	132	10.9494
ccuggccUCACCUUCACGUUAUCUCUUCCAGGUCAAUGG	chr17:34883859-34884126(-)$1	267	62	101	11.0935
AAAGUGGGGCCAAGGGCUGAAGAGCUGGGUCCGCUGCCG	chr1:26610816-26611083(-)$1	267	48	87	14.1917
CACGGGCGCUCGGCCACCGUGUGGUCGCUGGGCGUGCUU	chr22:50356192-50356456(+)$1	264	191	230	16.6725
CUUCCCAUGGUGGAGCCCCUCAGGGAGGUGCGGGGGGAG	chr1:1239383-1239626(-)$1	243	4	43	15.7288
UUGUCCCUAGAUUGGUCCACUGGGAAAACUGGAAGGUAA	chr9:140469102-140469327(-)$1	225	89	128	13.4084
CCACUCUGCUCCAUUCUGUUGGCAGGAAUUUUGGAAGCA	chr15:40700004-40700299(+)$1	295	108	147	11.8604
GAAGGGUCAGAGAAGAGGACUGCCUUGUCCUGGCUCCAC	chr10:113917016-113917274(-)$1	258	28	67	13.9231
AAUGGAUAUGGAUUUAUAAAUCGGUAUGUGUGUGUGUAU	chr12:10871616-10871889(-)$1	273	188	227	12.5296
GUUCUAGGAGGAGGAGGACUCCCUCAUCUUCUAGACACA	chr1:70705091-70705308(+)$1	217	72	111	13.2178
CCAACCGAAUCGCCAAAGGAACCUUCAAGGUGGAUGGGA	chr2:38903035-38903307(+)$1	272	66	105	14.6849
GAGGGACUUUGUAUGGUACAUGACCAAUUUUAGAAGGUU	chr1:53363003-53363256(-)$1	253	200	239	12.4030
ACCCAUUUCUGGCUCCUCAGAUGAGGAAGAAGAAGAAGA	chr12:6879238-6879468(+)$1	230	64	103	11.9668
GGUUUCCUUCGGUUUCCAGUUGUUUGGCCCAGGAAUUCA	chr6:168298785-168299019(+)$1	234	80	119	11.4448
ACGCCAUGUAUGUCAUCAUGUGGAUCACCUACAUGGCGU	chr18:21140088-21140315(-)$1	227	36	75	13.9820
UGGGACCACAGGUAAAGCUCCUGUUGGUUCUGUGGUUUC	chr2:228399443-228399700(+)$1	257	139	178	19.1100
UAACCAUUCUUGGUCUCUCUCCAGGGAUCAAGUUUGUGG	chr11:118892317-118892613(+)$1	296	128	167	14.4200
AAAGGGGAAGUUGGUGCAGAGGCUGGGGUCCAUCUUCCC	chr1:153906105-153906441(-)$1	336	34	73	14.8729
GAGGGUUUCUGGGCACGUAGUGCGUGCUCAAUCACUGUC	chr19:45160891-45161155(+)$1	264	49	88	13.0430
CCUGUGCCAGGGGUUGUCAAGGGCUUUUGGGUCAGAGUG	chr17:73897202-73897478(-)$1	276	6	45	12.5130
AGCCCUAAUGUGUAGCGUGAUGAUGCCUGCAGGUGGGGG	chr17:16246133-16246397(-)$1	264	27	66	13.1583
GGUUGCAGUGGGUGACCUCACAGGUGUUCACUCGAGUGC	chr22:44340441-44340694(+)$1	253	170	209	11.7047
CUGUUCUUUCUAGCUGGCAAACGCCCUUCUGGAAAAGGA	chr16:89623201-89623415(+)$1	214	80	119	16.6855
UCCAAAUUUUACCUGCCAAACUGCAACAAGAAUGGAUUU	chr7:45931428-45931653(+)$1	225	177	216	12.6154
AAUGACCUGGAUGACCCUGAAAGAGGAAUGAUUUUUGUC	chr16:70572090-70572363(+)$1	273	135	174	12.1818
CACCCUUUGGGCGUGGCUUCCUGGUGAUGGGAAGGGUCU	chr12:53692917-53693218(+)$1	301	240	279	14.6871
GGCGCCGUGCUGGGUAGCGGCGGCUUCGGCACGGUCUAC	chr22:50354617-50354879(+)$1	262	196	235	18.4867
GGGUUUGACUCUUUUAAGACGCCUUUACAGGAGAGUGCG	chr17:73662495-73662754(-)$1	259	189	228	12.2434
GGUGCCACAGCUCGCCACGUGUGUGAAAUGCUGGUGCAG	chr17:37899044-37899322(+)$1	278	160	199	15.5747
CGAGCUGAAGGGGAUGUGUUUUCACCUCCCAAUGAGAAC	chr11:61045771-61045973(-)$1	202	48	87	12.5456
CAGGGCCUGCAAAUCUCUAUCCAGAGCCUGGGCCCGUGC	chr1:981427-981662(+)$1	235	175	214	13.7831
UCUUCAUCACAAAGUUACUGUACUUCUGCUCAGAAUUAA	chr12:98940073-98940329(+)$1	256	212	251	11.5777

#DB
((.(((((...((((.(((...))).))))...))))).	chr14:53175053-53175346(+)$1	1	21	60	11.3152
(.(.((((((((((.(((....)))...)))))).))))	chr16:67985064-67985326(-)$1	1	149	188	13.9718
.(((((..((.(((.(((....)))..)))))..)))))	chr16:89857819-89858078(-)$1	1	25	64	13.7603
(((.(((((((...((((....))))...)))))))...	chr1:229438465-229438736(+)$1	1	66	105	15.8003
((.....((((((..(((....)))..))))))...)))	chr12:57535055-57535299(+)$1	1	78	117	14.5988
((.(((.(.(((.(......).))).).)))))))))))	chr1:19448385-19448604(-)$1	1	58	97	11.1184
...((((..(((((((((....)))))))))...)))))	chr7:23561882-23562147(-)$1	1	99	138	12.2970
....((((((((.(.(((....))).)..))))))))))	chr9:117029712-117029937(+)$1	1	58	97	13.6406
(.....(((((((((..(....)..))))))))).....	chr9:107594920-107595175(-)$1	1	49	88	12.6939
(((((((((....(((......)))..)))))..)))))	chr20:60734896-60735161(+)$1	1	34	73	11.7382
(((....(((((((((((....)))).))))))))))))	chrX:41201592-41201965(+)$1	1	140	179	12.9592
((.....(((((((((((....))))))).))))...))	chr19:2220006-2220246(+)$1	1	76	115	12.4283
.((..((((...(((((....)))).)....)))).)).	chr20:61460925-61461132(+)$1	1	84	123	11.7525
((.(..(((((((((.........)))))))))..)..)	chr9:116958168-116958392(+)$1	1	49	88	10.9021
((((.(((((...(((......)))...)))))..))))	chr9:116997823-116998032(+)$1	1	25	64	12.9871
.(((((((((((((((((....))))......))).)))	chr4:1732536-1732782(+)$1	1	77	116	12.6271
)((((((.((..((.(((....)))...))..)))))))	chr13:113769974-113770214(+)$1	1	184	223	12.9401
.(((.....(((((((((....))))).).)))....))	chr12:124110892-124111194(-)$1	1	29	68	11.9159
.(((((((.((....(((....)))...)).))))))).	chr20:39657970-39658260(+)$1	1	48	87	14.6925
((((((.((..(...(((....))).)..))))))))))	chr13:99092260-99092509(+)$1	1	205	244	16.1400
.((((((((((...((((....)))).))))))))))))	chr2:128180679-128180984(+)$1	1	121	160	16.6520
(..(((..(((((((.((....)).)))))))..)))..	chr16:67983693-67984011(-)$1	1	78	117	12.8304
..((((.((((((..(((....)))))))))))))...)	chr22:50943455-50943688(-)$1	1	83	122	13.5816
.((((((.((((((.(((....))).)))))).)).)))	chr19:45150382-45150666(+)$1	1	84	123	12.4434
.(((((((.(((...(((....))).)))..))))))).	chr19:47491155-47491463(+)$1	1	237	276	15.2398
((...((.(((((..((......))..))))).))....	chr16:71766923-71767210(-)$1	1	93	132	10.9494
)))((((..((((....(......)....))))....))	chr17:34883859-34884126(-)$1	1	62	101	11.0935
..((((((.(((...(((....)))))).))))))..))	chr1:26610816-26611083(-)$1	1	48	87	14.1917
((.(.(((((((((.(((....))).))))))))).)..	chr22:50356192-50356456(+)$1	1	191	230	16.6725
((((((.(.(((...(((....)))...))).).)))))	chr1:1239383-1239626(-)$1	1	4	43	15.7288
((..((((((.((..(((....))).))))))..))..)	chr9:140469102-140469327(-)$1	1	89	128	13.4084
((...(((((((((((((....)))))....))).))))	chr15:40700004-40700299(+)$1	1	108	147	11.8604
(..(((((((.((.((((....)))).)))))))))..)	chr10:113917016-113917274(-)$1	1	28	67	13.9231
.(((.(((((.((.(((......))).)).))))).)))	chr12:10871616-10871889(-)$1	1	188	227	12.5296
(((((((((((..((((....)))).))))))))).))(	chr1:70705091-70705308(+)$1	1	72	111	13.2178
((..((.(.(((((.(((....)))...))))).).)).	chr2:38903035-38903307(+)$1	1	66	105	14.6849
((((((((((.((((((.....))))....)).))))))	chr1:53363003-53363256(-)$1	1	200	239	12.4030
(.((.(((((..((((((....)))).))....))))).	chr12:6879238-6879468(+)$1	1	64	103	11.9668
((.(((((..((...((((....)))).))))))).)))	chr6:168298785-168299019(+)$1	1	80	119	11.4448
((((((((((.((.(((.....))).)).))))))))))	chr18:21140088-21140315(-)$1	1	36	75	13.9820
((((((((((((...(((....)))...)))))))))))	chr2:228399443-228399700(+)$1	1	139	178	19.1100
(((((((.((((((((((....))))))))))...))))	chr11:118892317-118892613(+)$1	1	128	167	14.4200
(..(((((((.(((..(((...)))....))).))))))	chr1:153906105-153906441(-)$1	1	34	73	14.8729
((.(((...(((((((((...)))))))))...))).))	chr19:45160891-45161155(+)$1	1	49	88	13.0430
((((..(((((((((......)))))))))..))).)))	chr17:73897202-73897478(-)$1	1	6	45	12.5130
((((((.((.((((((((....))).))))).)).))))	chr17:16246133-16246397(-)$1	1	27	66	13.1583
(.(((.((((((..((((...)))).))))))))).)))	chr22:44340441-44340694(+)$1	1	170	209	11.7047
((....(((((((..(((....)))...)))))))))).	chr16:89623201-89623415(+)$1	1	80	119	16.6855
((((..((((...(((......)))...))))))))..)	chr7:45931428-45931653(+)$1	1	177	216	12.6154
(..(((..((((.(.(((.....)))..).))))..)))	chr16:70572090-70572363(+)$1	1	135	174	12.1818
)(((((((...(((.(((....))).))).))))))).(	chr12:53692917-53693218(+)$1	1	240	279	14.6871
...((((((((((..(((....)))))))))))))...)	chr22:50354617-50354879(+)$1	1	196	235	18.4867
.((((..(((((((((((....)))...))))))))..)	chr17:73662495-73662754(-)$1	1	189	228	12.2434
(.(((..((((....(((....)))....))))..))).	chr17:37899044-37899322(+)$1	1	160	199	15.5747
....((.(..((((.(((....))).))))..).)).))	chr11:61045771-61045973(-)$1	1	48	87	12.5456
..(((((((.....((((....))))..)))))))..))	chr1:981427-981662(+)$1	1	175	214	13.7831
(((....((..((((......)))).))...))))))))	chr12:98940073-98940329(+)$1	1	212	251	11.5777

#PSSM
c : 0.15	d : 0.12	[ : 0.10	b : 0.08	= : 0.07	f : 0.05	e : 0.05	! : 0.05	# : 0.03	h : 0.03	: : 0.03	i : 0.03	$ : 0.03	a : 0.03	g : 0.03	) : 0.01	F : 0.01	" : 0.01	
c : 0.14	d : 0.14	= : 0.10	! : 0.10	b : 0.08	[ : 0.07	f : 0.07	g : 0.07	e : 0.05	# : 0.03	$ : 0.03	i : 0.03	) : 0.01	h : 0.01	" : 0.01	
[ : 0.10	! : 0.10	f : 0.08	d : 0.08	= : 0.08	c : 0.08	g : 0.08	$ : 0.07	e : 0.05	i : 0.05	" : 0.05	# : 0.03	b : 0.03	a : 0.01	) : 0.01	h : 0.01	
c : 0.15	d : 0.12	g : 0.12	= : 0.10	e : 0.08	$ : 0.07	# : 0.07	! : 0.05	f : 0.05	[ : 0.03	a : 0.03	i : 0.03	" : 0.03	b : 0.01	
g : 0.14	d : 0.10	c : 0.10	= : 0.10	e : 0.08	$ : 0.07	! : 0.07	[ : 0.07	# : 0.05	f : 0.05	b : 0.05	i : 0.03	" : 0.03	h : 0.01	
e : 0.15	g : 0.14	= : 0.10	d : 0.08	! : 0.08	b : 0.08	$ : 0.07	c : 0.07	# : 0.05	f : 0.05	i : 0.05	h : 0.01	[ : 0.01	
e : 0.14	g : 0.14	[ : 0.12	d : 0.10	= : 0.10	! : 0.08	i : 0.08	$ : 0.05	f : 0.05	# : 0.03	b : 0.03	h : 0.01	" : 0.01	
g : 0.15	e : 0.12	d : 0.10	= : 0.10	! : 0.08	i : 0.08	f : 0.07	a : 0.07	[ : 0.07	b : 0.05	h : 0.03	$ : 0.01	" : 0.01	
g : 0.12	= : 0.12	[ : 0.10	e : 0.10	d : 0.10	f : 0.08	b : 0.08	i : 0.08	! : 0.07	" : 0.05	h : 0.03	$ : 0.01	
i : 0.12	= : 0.12	g : 0.10	d : 0.10	e : 0.10	f : 0.08	c : 0.08	! : 0.07	" : 0.05	b : 0.05	h : 0.03	# : 0.01	[ : 0.01	$ : 0.01	
[ : 0.12	i : 0.12	c : 0.10	" : 0.08	f : 0.08	d : 0.08	= : 0.08	g : 0.07	! : 0.07	e : 0.05	h : 0.03	b : 0.03	# : 0.01	$ : 0.01	
c : 0.17	i : 0.10	b : 0.10	d : 0.08	f : 0.08	" : 0.08	g : 0.07	# : 0.05	! : 0.05	e : 0.05	= : 0.05	h : 0.03	a : 0.01	$ : 0.01	
" : 0.17	b : 0.12	i : 0.10	c : 0.08	d : 0.07	f : 0.07	g : 0.07	[ : 0.05	# : 0.05	e : 0.05	a : 0.03	! : 0.03	= : 0.03	h : 0.01	$ : 0.01	
" : 0.14	c : 0.12	! : 0.12	d : 0.10	i : 0.10	e : 0.07	a : 0.05	g : 0.05	# : 0.05	[ : 0.05	f : 0.03	b : 0.03	= : 0.01	h : 0.01	$ : 0.01	
d : 0.22	[ : 0.17	! : 0.12	" : 0.10	i : 0.08	c : 0.08	e : 0.05	# : 0.05	g : 0.03	o : 0.01	= : 0.01	h : 0.01	
c : 0.50	d : 0.21	o : 0.05	[ : 0.03	i : 0.03	! : 0.03	e : 0.03	g : 0.01	r : 0.01	b : 0.01	# : 0.01	= : 0.01	
c : 0.49	d : 0.21	o : 0.10	i : 0.03	e : 0.03	b : 0.03	! : 0.01	g : 0.01	r : 0.01	# : 0.01	= : 0.01	
c : 0.45	d : 0.15	o : 0.14	i : 0.03	a : 0.03	m : 0.03	e : 0.03	n : 0.03	g : 0.01	r : 0.01	b : 0.01	= : 0.01	
m : 0.68	o : 0.15	n : 0.05	c : 0.03	l : 0.03	r : 0.01	d : 0.01	
m : 0.70	o : 0.15	l : 0.07	n : 0.05	r : 0.01	
m : 0.70	o : 0.14	l : 0.07	n : 0.05	a : 0.01	r : 0.01	
m : 0.66	o : 0.10	d : 0.07	n : 0.05	l : 0.03	i : 0.03	] : 0.01	r : 0.01	
c : 0.52	d : 0.21	i : 0.05	o : 0.05	e : 0.03	a : 0.01	g : 0.01	r : 0.01	b : 0.01	m : 0.01	= : 0.01	n : 0.01	
c : 0.56	d : 0.22	i : 0.05	e : 0.03	b : 0.03	2 : 0.01	g : 0.01	r : 0.01	o : 0.01	= : 0.01	
c : 0.56	d : 0.22	i : 0.07	e : 0.03	2 : 0.01	g : 0.01	] : 0.01	b : 0.01	a : 0.01	= : 0.01	
] : 0.28	3 : 0.17	d : 0.15	i : 0.08	2 : 0.07	4 : 0.05	c : 0.05	g : 0.03	e : 0.03	= : 0.03	f : 0.01	
3 : 0.19	i : 0.12	2 : 0.10	] : 0.08	a : 0.07	4 : 0.07	d : 0.05	e : 0.05	f : 0.05	c : 0.05	b : 0.05	g : 0.03	= : 0.03	6 : 0.01	
3 : 0.19	i : 0.12	4 : 0.10	b : 0.10	c : 0.07	f : 0.07	2 : 0.07	] : 0.05	e : 0.05	g : 0.05	= : 0.05	d : 0.03	6 : 0.01	
i : 0.12	4 : 0.10	b : 0.10	f : 0.08	c : 0.08	e : 0.08	g : 0.08	d : 0.07	= : 0.07	3 : 0.03	2 : 0.03	a : 0.03	] : 0.03	6 : 0.01	h : 0.01	
i : 0.12	d : 0.10	f : 0.10	g : 0.10	e : 0.08	] : 0.08	= : 0.08	c : 0.07	4 : 0.07	b : 0.07	h : 0.03	6 : 0.01	2 : 0.01	3 : 0.01	
g : 0.12	e : 0.12	f : 0.10	d : 0.10	i : 0.08	= : 0.08	c : 0.07	2 : 0.07	3 : 0.05	b : 0.05	4 : 0.05	h : 0.03	6 : 0.01	] : 0.01	
g : 0.15	d : 0.15	i : 0.10	e : 0.10	f : 0.08	= : 0.08	3 : 0.05	2 : 0.05	c : 0.05	b : 0.03	h : 0.03	] : 0.03	6 : 0.01	4 : 0.01	
g : 0.14	d : 0.14	i : 0.10	c : 0.08	3 : 0.07	2 : 0.07	e : 0.07	= : 0.07	] : 0.07	f : 0.05	h : 0.03	b : 0.03	a : 0.03	4 : 0.01	
g : 0.15	2 : 0.12	d : 0.10	i : 0.08	c : 0.08	= : 0.08	e : 0.07	b : 0.07	3 : 0.05	] : 0.05	f : 0.03	h : 0.03	4 : 0.03	
g : 0.14	e : 0.10	d : 0.08	c : 0.08	= : 0.08	2 : 0.07	i : 0.07	b : 0.07	] : 0.05	3 : 0.05	h : 0.05	f : 0.05	4 : 0.03	> : 0.01	a : 0.01	
] : 0.17	g : 0.12	e : 0.10	d : 0.07	3 : 0.07	= : 0.07	c : 0.07	f : 0.05	h : 0.05	4 : 0.05	2 : 0.05	i : 0.03	b : 0.03	> : 0.01	a : 0.01	
c : 0.14	2 : 0.12	e : 0.10	g : 0.10	= : 0.08	d : 0.07	3 : 0.07	f : 0.05	b : 0.05	4 : 0.05	h : 0.03	i : 0.03	] : 0.03	> : 0.01	a : 0.01	
c : 0.19	d : 0.12	e : 0.10	2 : 0.10	b : 0.08	g : 0.08	= : 0.07	3 : 0.05	f : 0.05	> : 0.03	i : 0.03	h : 0.01	4 : 0.01	: : 0.01	
c : 0.19	d : 0.15	= : 0.08	] : 0.07	e : 0.07	b : 0.07	f : 0.05	i : 0.05	g : 0.05	h : 0.03	> : 0.03	: : 0.03	2 : 0.03	3 : 0.01	5 : 0.01	4 : 0.01	

#score	768.2889472389768
#seq	57
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_CDS_m1_run1.txt

#BEAR
#bb[ccc[gggggggcccaccclllccc]a]ccc]ggggg	chr10:17271230-17271578(+)$1	348	224	264	16.6417
[bbffffff!!bb[ddddcccnnnnnccc]dddd]bb]ff	chr16:29818737-29818993(+)$1	256	191	231	14.3408
####eeeee!!dddd!!eeeeellleeeee22dddd333e	chr16:88870148-88870432(+)$1	284	198	238	13.8357
cbb:bb[a!!bb[ccc####bbmmmmbb333ccc]bb22a	chr19:39340321-39340607(-)$1	286	71	111	16.9563
ccc$$$$$dddd[ccc"""bbnnnnnbb333ccc]dddd4	chr16:88870232-88870536(+)$1	304	146	186	15.2965
[ddddbb[ggggggg$$$$$bbmmmmbb]ggggggg]bb]	chr19:3977936-3978189(-)$1	253	166	206	13.6202
===[dddd$$$$$a[eeeee[ammmma]eeeeea333ddd	chr19:41111295-41111612(+)$1	317	257	297	13.7481
bb]ddddccc####dddd[ccclllccc]dddd4444ccc	chr19:39340237-39340490(-)$1	253	143	183	15.5251

#otherMatches

#Seq PSSM
CGCAGGAUGUUCGGCGGCCCGGGCACCGCGAGCCGGCCGA	chr10:17271230-17271578(+)$1	348	224	264	16.6417
AUCCGGAAGAACCAUGCCUGCGAGAUGUGUGGCAAGGCCU	chr16:29818737-29818993(+)$1	256	191	231	14.3408
ACUCCGCGCCCCGGCCUCCGCUACCAGUGGCAGCCGCAAg	chr16:88870148-88870432(+)$1	284	198	238	13.8357
AGCAGCGGAGGCGGUCGGGAGCGAUGGUGAAGAUggcggc	chr19:39340321-39340607(-)$1	286	71	111	16.9563
GCCGCAAgcgcgcccgcccgcccgccgcccccggACGCGA	chr16:88870232-88870536(+)$1	304	146	186	15.2965
GAGGUGUCCGCCCGUCAGGAGCUCAAGCAGCGGGCGCGCU	chr19:3977936-3978189(-)$1	253	166	206	13.6202
GGCGAAGUGAGAGGAGGCCCGUGGGGAGGGGCCCGGAGCU	chr19:41111295-41111612(+)$1	317	257	297	13.7481
gcgguggGGUGAGGCCAGGGCCCUAGGCGCUGGGAAGGCC	chr19:39340237-39340490(-)$1	253	143	183	15.5251

#DB
.((.(((.((((((((((((((...))).).))).)))))	chr10:17271230-17271578(+)$1	1	224	264	16.6417
.((((((((..((.(((((((.....))).)))).)).))	chr16:29818737-29818993(+)$1	1	191	231	14.3408
....(((((..((((..(((((...)))))..))))...)	chr16:88870148-88870432(+)$1	1	198	238	13.8357
))).((.(..((.(((....((....))...))).))..)	chr19:39340321-39340607(-)$1	1	71	111	16.9563
(((.....((((.(((...((.....))...))).)))).	chr16:88870232-88870536(+)$1	1	146	186	15.2965
.((((((.(((((((.....((....)).))))))).)).	chr19:3977936-3978189(-)$1	1	166	206	13.6202
(((.((((.....(.(((((.(....).))))))...)))	chr19:41111295-41111612(+)$1	1	257	297	13.7481
)).))))(((....((((.(((...))).))))....)))	chr19:39340237-39340490(-)$1	1	143	183	15.5251

#PSSM
# : 0.25	[ : 0.25	c : 0.25	= : 0.12	b : 0.12	
b : 0.50	# : 0.12	c : 0.12	d : 0.12	= : 0.12	
b : 0.37	# : 0.12	c : 0.12	d : 0.12	= : 0.12	] : 0.12	
[ : 0.25	d : 0.25	f : 0.12	# : 0.12	: : 0.12	$ : 0.12	
d : 0.37	c : 0.12	f : 0.12	e : 0.12	b : 0.12	$ : 0.12	
b : 0.25	d : 0.25	c : 0.12	f : 0.12	e : 0.12	$ : 0.12	
d : 0.25	c : 0.12	f : 0.12	e : 0.12	[ : 0.12	$ : 0.12	b : 0.12	
[ : 0.25	f : 0.12	e : 0.12	a : 0.12	$ : 0.12	d : 0.12	c : 0.12	
g : 0.25	f : 0.12	e : 0.12	! : 0.12	d : 0.12	$ : 0.12	c : 0.12	
! : 0.37	g : 0.25	d : 0.12	$ : 0.12	c : 0.12	
g : 0.25	! : 0.25	b : 0.12	d : 0.12	$ : 0.12	# : 0.12	
g : 0.25	b : 0.25	d : 0.25	$ : 0.12	# : 0.12	
g : 0.25	[ : 0.25	b : 0.12	d : 0.12	$ : 0.12	# : 0.12	
g : 0.25	c : 0.25	[ : 0.12	d : 0.12	a : 0.12	# : 0.12	
d : 0.37	g : 0.25	c : 0.25	[ : 0.12	
c : 0.37	d : 0.25	! : 0.12	$ : 0.12	e : 0.12	
d : 0.25	c : 0.12	! : 0.12	# : 0.12	" : 0.12	$ : 0.12	e : 0.12	
d : 0.25	e : 0.25	c : 0.12	# : 0.12	" : 0.12	$ : 0.12	
e : 0.25	a : 0.12	c : 0.12	# : 0.12	" : 0.12	$ : 0.12	[ : 0.12	
c : 0.37	e : 0.25	# : 0.12	b : 0.12	$ : 0.12	
c : 0.37	b : 0.37	e : 0.12	[ : 0.12	
c : 0.25	n : 0.25	b : 0.25	e : 0.12	a : 0.12	
l : 0.37	m : 0.37	n : 0.25	
l : 0.37	m : 0.37	n : 0.25	
l : 0.37	m : 0.37	n : 0.25	
m : 0.37	c : 0.25	n : 0.25	e : 0.12	
c : 0.37	b : 0.37	e : 0.12	a : 0.12	
c : 0.37	b : 0.37	e : 0.12	] : 0.12	
] : 0.37	e : 0.25	3 : 0.25	c : 0.12	
e : 0.25	3 : 0.25	a : 0.12	] : 0.12	g : 0.12	d : 0.12	
d : 0.25	3 : 0.25	] : 0.12	2 : 0.12	g : 0.12	e : 0.12	
c : 0.37	d : 0.25	2 : 0.12	g : 0.12	e : 0.12	
c : 0.37	d : 0.37	g : 0.12	e : 0.12	
c : 0.37	d : 0.25	g : 0.12	a : 0.12	4 : 0.12	
] : 0.50	d : 0.12	g : 0.12	3 : 0.12	4 : 0.12	
g : 0.25	b : 0.25	d : 0.25	3 : 0.12	4 : 0.12	
b : 0.25	3 : 0.25	g : 0.12	d : 0.12	] : 0.12	4 : 0.12	
d : 0.25	g : 0.12	] : 0.12	3 : 0.12	2 : 0.12	b : 0.12	c : 0.12	
d : 0.25	g : 0.12	f : 0.12	3 : 0.12	2 : 0.12	b : 0.12	c : 0.12	
g : 0.12	f : 0.12	e : 0.12	a : 0.12	4 : 0.12	] : 0.12	d : 0.12	c : 0.12	

#score	119.96479540453754
#seq	8
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_UTR_m2_run2.txt

#BEAR
a[a[ccc[bb"""==============	chr5:138629682-138629995(+)$1	313	58	85	12.4848
[===========lll===========]	chr20:57467353-57467621(+)$1	268	166	193	15.6118
ggggggg[cccmmmmcccggggggg:A	chr14:54421081-54421331(-)$1	250	215	242	11.6829
iiiiiiiiirrrrrrrrriiiiiiiii	chr6:64292547-64292775(+)$1	228	167	194	12.2485
!!iiiiiiiiimmmmiiiiiiiiiccc	chr6:7108016-7108272(+)$1	256	133	160	15.0339
$$$$$ffffffmmmmffffff333ddd	chr6:86352557-86352819(-)$1	262	134	161	10.4094
iiiiiii[cccmmmmccciiiiiiiii	chr2:200323329-200323580(-)$1	251	102	129	15.1722

#otherMatches

#Seq PSSM
CGCGGCCGGCCAAGGGCCCAGGGUGCG	chr5:138629682-138629995(+)$1	313	58	85	12.4848
GGGGGGGCUGGUGACAUCAGCCCCUCG	chr20:57467353-57467621(+)$1	268	166	193	15.6118
GGUCGGGAGUUGUAAAACCUCGGCCAC	chr14:54421081-54421331(-)$1	250	215	242	11.6829
UAGUGCCCUCUUUUCCCUAGGGCAUUG	chr6:64292547-64292775(+)$1	228	167	194	12.2485
ACUGCGGAGUUGAUGAACUUUGCACAU	chr6:7108016-7108272(+)$1	256	133	160	15.0339
GAGCGCGCUCGGAGGCGAGUGGAACUG	chr6:86352557-86352819(-)$1	262	134	161	10.4094
gugggggaggCGAUCGCCCUCCUAUCU	chr2:200323329-200323580(-)$1	251	102	129	15.1722

#DB
(.(.(((.((...((((((((((((((	chr5:138629682-138629995(+)$1	1	58	85	12.4848
.(((((((((((...))))))))))).	chr20:57467353-57467621(+)$1	1	166	193	15.6118
(((((((.(((....)))))))))).)	chr14:54421081-54421331(-)$1	1	215	242	11.6829
(((((((((.........)))))))))	chr6:64292547-64292775(+)$1	1	167	194	12.2485
..(((((((((....))))))))))))	chr6:7108016-7108272(+)$1	1	133	160	15.0339
.....((((((....))))))...)))	chr6:86352557-86352819(-)$1	1	134	161	10.4094
(((((((.(((....))))))))))))	chr2:200323329-200323580(-)$1	1	102	129	15.1722

#PSSM
i : 0.28	a : 0.14	[ : 0.14	g : 0.14	! : 0.14	$ : 0.14	
i : 0.28	[ : 0.14	= : 0.14	g : 0.14	! : 0.14	$ : 0.14	
i : 0.42	a : 0.14	= : 0.14	g : 0.14	$ : 0.14	
i : 0.42	[ : 0.14	= : 0.14	g : 0.14	$ : 0.14	
i : 0.42	c : 0.14	= : 0.14	g : 0.14	$ : 0.14	
i : 0.42	c : 0.14	= : 0.14	g : 0.14	f : 0.14	
i : 0.42	c : 0.14	= : 0.14	g : 0.14	f : 0.14	
[ : 0.42	i : 0.28	= : 0.14	f : 0.14	
c : 0.28	i : 0.28	b : 0.14	= : 0.14	f : 0.14	
c : 0.28	b : 0.14	= : 0.14	r : 0.14	i : 0.14	f : 0.14	
c : 0.28	" : 0.14	= : 0.14	r : 0.14	i : 0.14	f : 0.14	
m : 0.57	" : 0.14	= : 0.14	r : 0.14	
m : 0.57	" : 0.14	l : 0.14	r : 0.14	
m : 0.57	= : 0.14	l : 0.14	r : 0.14	
m : 0.57	= : 0.14	l : 0.14	r : 0.14	
= : 0.28	c : 0.28	r : 0.14	i : 0.14	f : 0.14	
= : 0.28	c : 0.28	r : 0.14	i : 0.14	f : 0.14	
= : 0.28	c : 0.28	r : 0.14	i : 0.14	f : 0.14	
i : 0.42	= : 0.28	g : 0.14	f : 0.14	
i : 0.42	= : 0.28	g : 0.14	f : 0.14	
i : 0.42	= : 0.28	g : 0.14	f : 0.14	
i : 0.42	= : 0.28	g : 0.14	3 : 0.14	
i : 0.42	= : 0.28	g : 0.14	3 : 0.14	
i : 0.42	= : 0.28	g : 0.14	3 : 0.14	
= : 0.28	i : 0.28	g : 0.14	c : 0.14	d : 0.14	
= : 0.28	i : 0.28	: : 0.14	c : 0.14	d : 0.14	
i : 0.28	= : 0.14	] : 0.14	A : 0.14	c : 0.14	d : 0.14	

#score	92.64383485519997
#seq	7
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_UTR_m3_run2.txt

#BEAR
gggggnnnnnggggg	chr14:39644376-39644610(+)$1	234	39	54	9.6624
eeeeennnnneeeee	chr3:142741234-142741597(+)$1	363	44	59	12.1056
!!cccnnnnnccc22	chr17:62498192-62498426(-)$1	234	60	75	9.0170
eeeeennnnneeeee	chr17:66511434-66511684(+)$1	250	213	228	12.1056
fff[annnnna]fff	chr5:54645288-54645581(+)$1	293	104	119	8.9811
eeeeennnnneeeee	chr2:99953876-99954141(+)$1	265	87	102	12.1056
!ddddnnnnndddd]	chr7:134625724-134626026(+)$1	302	212	227	9.1072
#ddddnnnnnddddh	chr5:74077175-74077482(-)$1	307	211	226	8.7566
d[cccnnnnnccc33	chr16:8998193-8998466(-)$1	273	141	156	9.2886
eeeeeooooooeeee	chr6:163955938-163956223(+)$1	285	25	40	8.2445
eeeeennnnneeeee	chr6:136582294-136582597(-)$1	303	87	102	12.1056
eeeeeooooooeeee	chr12:76462587-76462864(-)$1	277	248	263	8.2445
gggggnnnnnggggg	chr14:24606627-24606873(+)$1	246	92	107	9.6624
fffffnnnnnfffff	chr1:1323100-1323348(-)$1	248	100	115	9.0774
eeeeennnnneeeee	chr15:52860944-52861192(-)$1	248	12	27	12.1056
eeeeennnnneeeee	chr2:190647788-190648097(-)$1	309	237	252	12.1056
eeeeennnnneeeee	chr7:134632261-134632621(+)$1	360	59	74	12.1056
eeeeennnnneeeee	chr4:174253109-174253474(-)$1	365	289	304	12.1056
""cccnnnnnccc]f	chr17:62499206-62499423(-)$1	217	7	22	9.0255
fffffnnnnnfffff	chr15:69072373-69072582(-)$1	209	60	75	9.0774
eeeeennnnneeeee	chr16:4881921-4882240(-)$1	319	155	170	12.1056
eeeeennnnneeeee	chr1:46072131-46072374(+)$1	243	123	138	12.1056
eeeeennnnneeeee	chr17:16029295-16029630(-)$1	335	227	242	12.1056
eeeeennnnneeeee	chr6:35838024-35838371(-)$1	347	300	315	12.1056
gggggnnnnnggggg	chr16:88783473-88783739(-)$1	266	249	264	9.6624
eeeeeooooooeeee	chr3:142761886-142762160(+)$1	274	184	199	8.2445
ee[bbnnnnnbb]ee	chr2:232576555-232576782(+)$1	227	132	147	9.5313
eeeeennnnneeeee	chr17:40134160-40134500(-)$1	340	255	270	12.1056
eeeeennnnneeeee	chr1:245027596-245027840(-)$1	244	160	175	12.1056
gggggnnnnnggggg	chr13:107211698-107212024(-)$1	326	143	158	9.6624
eecccnnnnnccc22	chr19:8530104-8530353(+)$1	249	108	123	9.6035
eeeeeooooooeeee	chr14:73563521-73563793(+)$1	272	29	44	8.2445
[ddddnnnnnddddb	chr21:38456350-38456662(+)$1	312	38	53	8.7191
eeeeennnnneeeee	chr2:242256863-242257115(+)$1	252	123	138	12.1056
eeeeennnnneeeee	chr2:48025630-48025932(+)$1	302	119	134	12.1056
ee[bbnnnnnbb]ee	chr2:187368707-187369062(+)$1	355	162	177	9.5313
d[cccnnnnnccc33	chr16:69687038-69687300(+)$1	262	227	242	9.2886
eeeeennnnneeeee	chr4:174253035-174253309(-)$1	274	124	139	12.1056
eeeeeooooooeeee	chr11:122929515-122929718(-)$1	203	154	169	8.2445
eeeeennnnneeeee	chr10:70525533-70525875(+)$1	342	210	225	12.1056
eeeeeooooooeeee	chr16:69681313-69681590(+)$1	277	241	256	8.2445
fffffnnnnnfffff	chr4:74286711-74286937(+)$1	226	30	45	9.0774
=[cccnnnnnccc22	chr6:163956023-163956259(+)$1	236	124	139	9.0354
gggggnnnnnggggg	chr8:124383041-124383288(-)$1	247	214	229	9.6624
d[cccnnnnncccdd	chr3:9487310-9487527(+)$1	217	21	36	9.1891
eeeeennnnneeeee	chr8:74205732-74205964(-)$1	232	180	195	12.1056
eeeeennnnneeeee	chr14:24105771-24106012(+)$1	241	183	198	12.1056
ee[bbnnnnnbb]ee	chr2:232576503-232576755(+)$1	252	184	199	9.5313

#otherMatches

#Seq PSSM
GCGCCUCGGCGGCGC	chr14:39644376-39644610(+)$1	234	39	54	9.6624
GAAAAUAAUUUUUUC	chr3:142741234-142741597(+)$1	363	44	59	12.1056
UAACACAACUUGUCU	chr17:62498192-62498426(-)$1	234	60	75	9.0170
GCAGUUGUGCACUGC	chr17:66511434-66511684(+)$1	250	213	228	12.1056
UCUCCUAGAUGAAGA	chr5:54645288-54645581(+)$1	293	104	119	8.9811
GGUCUGUGAGAGACC	chr2:99953876-99954141(+)$1	265	87	102	12.1056
AGAAUGGAGAAUUCA	chr7:134625724-134626026(+)$1	302	212	227	9.1072
UGGAUGAUAAAUCCU	chr5:74077175-74077482(-)$1	307	211	226	8.7566
GCGGCAGGAAGCCCA	chr16:8998193-8998466(-)$1	273	141	156	9.2886
UCUCUCUUUAAAGAG	chr6:163955938-163956223(+)$1	285	25	40	8.2445
AGUCCUAAAUGGACU	chr6:136582294-136582597(-)$1	303	87	102	12.1056
GUCUAUUUUUUUGGA	chr12:76462587-76462864(-)$1	277	248	263	8.2445
UUUCUGCAGAAGGAA	chr14:24606627-24606873(+)$1	246	92	107	9.6624
UUGCCAAAGGGGCGA	chr1:1323100-1323348(-)$1	248	100	115	9.0774
CCUGGGAGAGCUGGG	chr15:52860944-52861192(-)$1	248	12	27	12.1056
UAUGUCAACAGCAUG	chr2:190647788-190648097(-)$1	309	237	252	12.1056
CCGGCAAAAGGCUGG	chr7:134632261-134632621(+)$1	360	59	74	12.1056
GGCAAUUAUUUUGCU	chr4:174253109-174253474(-)$1	365	289	304	12.1056
UGUGGAAAAACCAAU	chr17:62499206-62499423(-)$1	217	7	22	9.0255
GAUUAAUAACUAAUC	chr15:69072373-69072582(-)$1	209	60	75	9.0774
GAAGAGGGUGUCUUC	chr16:4881921-4882240(-)$1	319	155	170	12.1056
ACAUAGAUGGUAUGU	chr1:46072131-46072374(+)$1	243	123	138	12.1056
gaCUCCAAGUGAGuu	chr17:16029295-16029630(-)$1	335	227	242	12.1056
CCAAGAAAAACUUGG	chr6:35838024-35838371(-)$1	347	300	315	12.1056
GUUGGGGUUGUCAAC	chr16:88783473-88783739(-)$1	266	249	264	9.6624
UACUCUGAAAUGAGU	chr3:142761886-142762160(+)$1	274	184	199	8.2445
GUGAUGGUGAGUAGC	chr2:232576555-232576782(+)$1	227	132	147	9.5313
GUGGGAAGAACCCGC	chr17:40134160-40134500(-)$1	340	255	270	12.1056
GCCGCCACCAGUGGC	chr1:245027596-245027840(-)$1	244	160	175	12.1056
CUCCGAAGGGUGGAG	chr13:107211698-107212024(-)$1	326	143	158	9.6624
UGAUGGUGAACAUGC	chr19:8530104-8530353(+)$1	249	108	123	9.6035
ACUCUUGUUGUAGAG	chr14:73563521-73563793(+)$1	272	29	44	8.2445
augcaaacgaugcaa	chr21:38456350-38456662(+)$1	312	38	53	8.7191
CCAAAACUCAUUUGG	chr2:242256863-242257115(+)$1	252	123	138	12.1056
GUAGGCACAACUUAC	chr2:48025630-48025932(+)$1	302	119	134	12.1056
GUGUUGAAAAAAGAU	chr2:187368707-187369062(+)$1	355	162	177	9.5313
UACCUGACUGAGGGC	chr16:69687038-69687300(+)$1	262	227	242	9.2886
GGCAAUUAUUUUGCU	chr4:174253035-174253309(-)$1	274	124	139	12.1056
AGUAAUUUGUUUUAU	chr11:122929515-122929718(-)$1	203	154	169	8.2445
GCUGCAAAAAGUGGC	chr10:70525533-70525875(+)$1	342	210	225	12.1056
CAAUUUUUCCUAAUU	chr16:69681313-69681590(+)$1	277	241	256	8.2445
UUUAAUAGGUUUGAA	chr4:74286711-74286937(+)$1	226	30	45	9.0774
GGUACCUGCAGUAAG	chr6:163956023-163956259(+)$1	236	124	139	9.0354
CUUUUUAGCUAGAAG	chr8:124383041-124383288(-)$1	247	214	229	9.6624
AUCUUAAAGGAAGUA	chr3:9487310-9487527(+)$1	217	21	36	9.1891
GAUACUUUUUGUGUC	chr8:74205732-74205964(-)$1	232	180	195	12.1056
ggugagacuaucacc	chr14:24105771-24106012(+)$1	241	183	198	12.1056
GUGAUGGUGAGUAGC	chr2:232576503-232576755(+)$1	252	184	199	9.5313

#DB
(((((.....)))))	chr14:39644376-39644610(+)$1	1	39	54	9.6624
(((((.....)))))	chr3:142741234-142741597(+)$1	1	44	59	12.1056
..(((.....)))..	chr17:62498192-62498426(-)$1	1	60	75	9.0170
(((((.....)))))	chr17:66511434-66511684(+)$1	1	213	228	12.1056
(((.(.....).)))	chr5:54645288-54645581(+)$1	1	104	119	8.9811
(((((.....)))))	chr2:99953876-99954141(+)$1	1	87	102	12.1056
.((((.....)))).	chr7:134625724-134626026(+)$1	1	212	227	9.1072
.((((.....)))))	chr5:74077175-74077482(-)$1	1	211	226	8.7566
(.(((.....)))..	chr16:8998193-8998466(-)$1	1	141	156	9.2886
(((((......))))	chr6:163955938-163956223(+)$1	1	25	40	8.2445
(((((.....)))))	chr6:136582294-136582597(-)$1	1	87	102	12.1056
(((((......))))	chr12:76462587-76462864(-)$1	1	248	263	8.2445
(((((.....)))))	chr14:24606627-24606873(+)$1	1	92	107	9.6624
(((((.....)))))	chr1:1323100-1323348(-)$1	1	100	115	9.0774
(((((.....)))))	chr15:52860944-52861192(-)$1	1	12	27	12.1056
(((((.....)))))	chr2:190647788-190648097(-)$1	1	237	252	12.1056
(((((.....)))))	chr7:134632261-134632621(+)$1	1	59	74	12.1056
(((((.....)))))	chr4:174253109-174253474(-)$1	1	289	304	12.1056
..(((.....))).)	chr17:62499206-62499423(-)$1	1	7	22	9.0255
(((((.....)))))	chr15:69072373-69072582(-)$1	1	60	75	9.0774
(((((.....)))))	chr16:4881921-4882240(-)$1	1	155	170	12.1056
(((((.....)))))	chr1:46072131-46072374(+)$1	1	123	138	12.1056
(((((.....)))))	chr17:16029295-16029630(-)$1	1	227	242	12.1056
(((((.....)))))	chr6:35838024-35838371(-)$1	1	300	315	12.1056
(((((.....)))))	chr16:88783473-88783739(-)$1	1	249	264	9.6624
(((((......))))	chr3:142761886-142762160(+)$1	1	184	199	8.2445
((.((.....)).))	chr2:232576555-232576782(+)$1	1	132	147	9.5313
(((((.....)))))	chr17:40134160-40134500(-)$1	1	255	270	12.1056
(((((.....)))))	chr1:245027596-245027840(-)$1	1	160	175	12.1056
(((((.....)))))	chr13:107211698-107212024(-)$1	1	143	158	9.6624
(((((.....)))..	chr19:8530104-8530353(+)$1	1	108	123	9.6035
(((((......))))	chr14:73563521-73563793(+)$1	1	29	44	8.2445
.((((.....)))))	chr21:38456350-38456662(+)$1	1	38	53	8.7191
(((((.....)))))	chr2:242256863-242257115(+)$1	1	123	138	12.1056
(((((.....)))))	chr2:48025630-48025932(+)$1	1	119	134	12.1056
((.((.....)).))	chr2:187368707-187369062(+)$1	1	162	177	9.5313
(.(((.....)))..	chr16:69687038-69687300(+)$1	1	227	242	9.2886
(((((.....)))))	chr4:174253035-174253309(-)$1	1	124	139	12.1056
(((((......))))	chr11:122929515-122929718(-)$1	1	154	169	8.2445
(((((.....)))))	chr10:70525533-70525875(+)$1	1	210	225	12.1056
(((((......))))	chr16:69681313-69681590(+)$1	1	241	256	8.2445
(((((.....)))))	chr4:74286711-74286937(+)$1	1	30	45	9.0774
(.(((.....)))..	chr6:163956023-163956259(+)$1	1	124	139	9.0354
(((((.....)))))	chr8:124383041-124383288(-)$1	1	214	229	9.6624
(.(((.....)))))	chr3:9487310-9487527(+)$1	1	21	36	9.1891
(((((.....)))))	chr8:74205732-74205964(-)$1	1	180	195	12.1056
(((((.....)))))	chr14:24105771-24106012(+)$1	1	183	198	12.1056
((.((.....)).))	chr2:232576503-232576755(+)$1	1	184	199	9.5313

#PSSM
e : 0.62	g : 0.10	f : 0.08	d : 0.06	! : 0.04	# : 0.02	" : 0.02	[ : 0.02	= : 0.02	
e : 0.62	g : 0.10	f : 0.08	[ : 0.08	d : 0.06	! : 0.02	" : 0.02	
e : 0.54	c : 0.14	g : 0.10	f : 0.08	d : 0.06	[ : 0.06	
e : 0.54	c : 0.14	g : 0.10	d : 0.06	f : 0.06	b : 0.06	[ : 0.02	
e : 0.54	c : 0.14	g : 0.10	d : 0.06	f : 0.06	b : 0.06	a : 0.02	
n : 0.87	o : 0.12	
n : 0.87	o : 0.12	
n : 0.87	o : 0.12	
n : 0.87	o : 0.12	
n : 0.87	o : 0.12	
e : 0.41	c : 0.14	o : 0.12	g : 0.10	d : 0.06	f : 0.06	b : 0.06	a : 0.02	
e : 0.54	c : 0.14	g : 0.10	d : 0.06	f : 0.06	b : 0.06	] : 0.02	
e : 0.54	c : 0.14	g : 0.10	f : 0.08	d : 0.06	] : 0.06	
e : 0.60	g : 0.10	f : 0.08	d : 0.08	2 : 0.06	3 : 0.04	] : 0.02	
e : 0.60	g : 0.10	f : 0.10	2 : 0.06	3 : 0.04	] : 0.02	h : 0.02	b : 0.02	d : 0.02	

#score	495.73137449757076
#seq	48
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_CDS_m2_run2.txt

#BEAR
BB}FFFFFFYYGGGGGGG	chr22:20110119-20110364(+)$1	245	178	196	9.8282
GGDDDD}BBYYGGGGGGG	chr10:49659563-49659835(-)$1	272	248	266	10.9025
DD}CCC}EEEEEFFFFFF	chr19:50162950-50163194(-)$1	244	196	214	10.3056
::DDDD}BB}BBFFFFFF	chr1:11850810-11851087(-)$1	277	256	274	10.1051
BZZZBB}BBYYBB}EEEE	chr7:1478502-1478766(-)$1	264	242	260	8.8936
FF}CCC}BB}CCC}A}A}	chr19:1496433-1496720(+)$1	287	257	275	8.9009
}EEEEE}DDDDFFFFFF:	chr20:60911863-60912149(-)$1	286	211	229	10.6441
EEEEEYYCCC}JJJJJJJ	chr19:50163992-50164304(-)$1	312	192	210	10.2337
BB}A}A}BBYYGGGGGGG	chr21:47734477-47734738(-)$1	261	133	151	12.6086
DDBB}A}DDDD}FFFFFF	chr19:6532716-6532990(+)$1	274	199	217	10.2791
C}BB}A}BB}A}FFFFFF	chr7:1479449-1479728(-)$1	279	238	256	11.5953
}EEEEEYYDDDDFFFFFF	chr22:20110056-20110319(+)$1	263	231	249	10.7333
DDDD{AEEEEEGGGGGGG	chr11:47380067-47380355(-)$1	288	0	18	8.7456
CCCYYAYYAYYGGGGGGG	chr1:1155970-1156214(-)$1	244	192	210	11.4721
fDDDDZZZBB}GGGGGGG	chr1:47689635-47689899(-)$1	264	227	245	9.9494
FFFFFF}DDDDHHHHHHH	chr19:50434213-50434481(+)$1	268	241	259	10.3273
~~~BB}CCCYYGGGGGGG	chr3:157820555-157820810(-)$1	255	199	217	11.0510
}EEEEE}BB}CCCJJJJJ	chr16:75270555-75270830(-)$1	275	250	268	10.5566
~~BBZZZCCC}GGGGGGG	chr17:80141704-80141986(-)$1	282	165	183	11.2473
}EEEEE}CCC}HHHHHHH	chrX:47430493-47430835(+)$1	342	218	236	12.5655
FF}AYYCCCYYFFFFFF:	chr11:47376992-47377220(-)$1	228	205	223	10.2571
GA}CCC}A}AJJJJJJJJ	chr17:17942662-17942935(+)$1	273	246	264	8.6478
:EEEEEYYBBHHHHHHHH	chr1:32768135-32768405(+)$1	270	90	108	11.0533
FFFFFF}CCC}FFFFFFD	chr7:1479528-1479814(-)$1	286	259	277	10.2020
C}A}BB}BB}HHHHHHHH	chr19:17397398-17397665(+)$1	267	241	259	11.4928
~EEEEE}DDDD}IIIIII	chr4:946116-946380(+)$1	264	206	224	10.9305
EEEE}A}CCC}A}HHHHH	chr22:20109980-20110244(+)$1	264	204	222	11.8024
}EEEEE}BBYYGGGGGGG	chr14:91686685-91686950(+)$1	265	181	199	13.1977
C}CCCYYBB}EEEEEJJJ	chr6:33231022-33231372(-)$1	350	198	216	9.1328
YEEEEE}A}DDDDFFFFF	chr19:17397330-17397587(+)$1	257	181	199	10.4314

#otherMatches

#Seq PSSM
GUGGGGGUUGGUGUCUGG	chr22:20110119-20110364(+)$1	245	178	196	9.8282
GCAGUUGUCAGCAGCAca	chr10:49659563-49659835(-)$1	272	248	266	10.9025
CAGCCACCCACUCUCCCU	chr19:50162950-50163194(-)$1	244	196	214	10.3056
UCCCACUGGACAACUGCC	chr1:11850810-11851087(-)$1	277	256	274	10.1051
CAGAGCUGGAAGGAGGAG	chr7:1478502-1478766(-)$1	264	242	260	8.8936
GAUAGGAGCugugugugu	chr19:1496433-1496720(+)$1	287	257	275	8.9009
UCCUGUGGGACCGUGGGU	chr20:60911863-60912149(-)$1	286	211	229	10.6441
UCCCUGACUAGGCUCCUG	chr19:50163992-50164304(-)$1	312	192	210	10.2337
CAUCUGAGAGUGGGAGGC	chr21:47734477-47734738(-)$1	261	133	151	12.6086
UGCCGCACACUGGCUUUG	chr19:6532716-6532990(+)$1	274	199	217	10.2791
GACUGGACCUGUAGUGCC	chr7:1479449-1479728(-)$1	279	238	256	11.5953
uguCUGGGGGGUGGGGGU	chr22:20110056-20110319(+)$1	263	231	249	10.7333
CGUGUCUGUGCCCUGCCC	chr11:47380067-47380355(-)$1	288	0	18	8.7456
CACUCUGCGUUUUGGGGG	chr1:1155970-1156214(-)$1	244	192	210	11.4721
AGUCUGCCCCACCCCACC	chr1:47689635-47689899(-)$1	264	227	245	9.9494
cagcucacacugugggga	chr19:50434213-50434481(+)$1	268	241	259	10.3273
AAUCAAGCAGAGGCGAAG	chr3:157820555-157820810(-)$1	255	199	217	11.0510
GCCUGUUGCGAGGCCUUC	chr16:75270555-75270830(-)$1	275	250	268	10.5566
CUUCUAUGUUUAGACUUC	chr17:80141704-80141986(-)$1	282	165	183	11.2473
CUGCCCUCAGAUCCUGGC	chrX:47430493-47430835(+)$1	342	218	236	12.5655
GGACAAGGACAAGGGCAC	chr11:47376992-47377220(-)$1	228	205	223	10.2571
GCCCCCACCCCGCGCGUG	chr17:17942662-17942935(+)$1	273	246	264	8.6478
UGUUGGAAAUUACUAUUA	chr1:32768135-32768405(+)$1	270	90	108	11.0533
CCUGGACGGGACCCAGGG	chr7:1479528-1479814(-)$1	286	259	277	10.2020
AGAAGGUGCUUUGGAACA	chr19:17397398-17397665(+)$1	267	241	259	11.4928
UGCAGGUAGGGGGCCCAG	chr4:946116-946380(+)$1	264	206	224	10.9305
GAGGACGCAGCGCCCAGG	chr22:20109980-20110244(+)$1	264	204	222	11.8024
ACAGCCAGAGCAGAAGGA	chr14:91686685-91686950(+)$1	265	181	199	13.1977
uguguguguguguAGGGA	chr6:33231022-33231372(-)$1	350	198	216	9.1328
uguguguguguAGGGAGC	chr19:17397330-17397587(+)$1	257	181	199	10.4314

#DB
)).))))))..)))))))	chr22:20110119-20110364(+)$1	1	178	196	9.8282
)))))).))..)))))))	chr10:49659563-49659835(-)$1	1	248	266	10.9025
)).))).)))))))))))	chr19:50162950-50163194(-)$1	1	196	214	10.3056
..)))).)).))))))))	chr1:11850810-11851087(-)$1	1	256	274	10.1051
)...)).))..)).))))	chr7:1478502-1478766(-)$1	1	242	260	8.8936
)).))).)).))).).).	chr19:1496433-1496720(+)$1	1	257	275	8.9009
.))))).)))))))))).	chr20:60911863-60912149(-)$1	1	211	229	10.6441
)))))..))).)))))))	chr19:50163992-50164304(-)$1	1	192	210	10.2337
)).).).))..)))))))	chr21:47734477-47734738(-)$1	1	133	151	12.6086
)))).).)))).))))))	chr19:6532716-6532990(+)$1	1	199	217	10.2791
).)).).)).).))))))	chr7:1479449-1479728(-)$1	1	238	256	11.5953
.)))))..))))))))))	chr22:20110056-20110319(+)$1	1	231	249	10.7333
((((.(((((((((((((	chr11:47380067-47380355(-)$1	1	0	18	8.7456
)))..)..)..)))))))	chr1:1155970-1156214(-)$1	1	192	210	11.4721
)))))...)).)))))))	chr1:47689635-47689899(-)$1	1	227	245	9.9494
)))))).)))))))))))	chr19:50434213-50434481(+)$1	1	241	259	10.3273
...)).)))..)))))))	chr3:157820555-157820810(-)$1	1	199	217	11.0510
.))))).)).))))))))	chr16:75270555-75270830(-)$1	1	250	268	10.5566
..))...))).)))))))	chr17:80141704-80141986(-)$1	1	165	183	11.2473
.))))).))).)))))))	chrX:47430493-47430835(+)$1	1	218	236	12.5655
)).)..)))..)))))).	chr11:47376992-47377220(-)$1	1	205	223	10.2571
)).))).).)))))))))	chr17:17942662-17942935(+)$1	1	246	264	8.6478
.)))))..))))))))))	chr1:32768135-32768405(+)$1	1	90	108	11.0533
)))))).))).)))))))	chr7:1479528-1479814(-)$1	1	259	277	10.2020
).).)).)).))))))))	chr19:17397398-17397665(+)$1	1	241	259	11.4928
.))))).)))).))))))	chr4:946116-946380(+)$1	1	206	224	10.9305
)))).).))).).)))))	chr22:20109980-20110244(+)$1	1	204	222	11.8024
.))))).))..)))))))	chr14:91686685-91686950(+)$1	1	181	199	13.1977
).)))..)).)))))(((	chr6:33231022-33231372(-)$1	1	198	216	9.1328
.))))).).)))))))))	chr19:17397330-17397587(+)$1	1	181	199	10.4314

#PSSM
} : 0.16	F : 0.13	C : 0.13	B : 0.10	D : 0.10	~ : 0.10	G : 0.06	: : 0.06	E : 0.06	f : 0.03	Y : 0.03	
E : 0.33	D : 0.13	F : 0.13	} : 0.10	B : 0.06	~ : 0.06	G : 0.03	: : 0.03	Z : 0.03	C : 0.03	A : 0.03	
E : 0.33	} : 0.19	D : 0.13	B : 0.10	C : 0.06	F : 0.06	Z : 0.03	~ : 0.03	A : 0.03	
E : 0.33	D : 0.13	C : 0.13	B : 0.13	F : 0.10	A : 0.06	Z : 0.03	Y : 0.03	} : 0.03	
E : 0.30	C : 0.13	} : 0.13	F : 0.10	D : 0.10	B : 0.10	Y : 0.06	{ : 0.03	Z : 0.03	
E : 0.26	A : 0.19	F : 0.10	C : 0.10	Y : 0.10	D : 0.06	B : 0.06	Z : 0.06	} : 0.03	
} : 0.63	Y : 0.16	Z : 0.06	C : 0.06	F : 0.03	E : 0.03	
B : 0.33	C : 0.23	D : 0.13	Y : 0.10	E : 0.06	A : 0.06	F : 0.03	Z : 0.03	
B : 0.39	C : 0.23	D : 0.16	E : 0.06	} : 0.06	F : 0.03	A : 0.03	
Y : 0.26	} : 0.19	D : 0.19	C : 0.16	E : 0.06	B : 0.06	A : 0.03	
Y : 0.26	D : 0.19	} : 0.19	E : 0.10	C : 0.06	H : 0.06	B : 0.03	A : 0.03	J : 0.03	
G : 0.30	H : 0.13	F : 0.10	} : 0.10	E : 0.06	B : 0.06	C : 0.06	J : 0.06	D : 0.06	A : 0.03	
G : 0.30	F : 0.26	H : 0.13	C : 0.06	J : 0.06	B : 0.03	I : 0.03	} : 0.03	E : 0.03	D : 0.03	
G : 0.30	F : 0.30	H : 0.16	J : 0.10	} : 0.06	I : 0.03	E : 0.03	
G : 0.30	F : 0.30	H : 0.16	J : 0.10	E : 0.06	A : 0.03	I : 0.03	
G : 0.30	F : 0.30	H : 0.16	J : 0.13	E : 0.03	} : 0.03	I : 0.03	
G : 0.30	F : 0.30	H : 0.16	J : 0.13	E : 0.03	A : 0.03	I : 0.03	
G : 0.30	F : 0.19	H : 0.16	J : 0.13	: : 0.06	E : 0.03	} : 0.03	D : 0.03	I : 0.03	

#score	318.09399976748347
#seq	30
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_UTR_m2_run1.txt

#BEAR
==========nnnnn==========	chr16:447942-448197(+)$1	255	139	164	10.7335
ggggg[ddddmmmmdddd]gggggg	chr17:7477029-7477290(+)$1	261	126	151	8.7374
[a[gggggggnnnnnggggggg]a]	chr14:23791035-23791282(+)$1	247	16	41	9.8836
ee!!eeeeeooooooeeeee4444e	chr10:21823278-21823534(+)$1	256	183	208	8.9229
d[a[a[bb[annnnna]bb]a]a]d	chr4:2935877-2936133(-)$1	256	49	74	9.6499
!!eeeeeddddmmmmdddd]eeeee	chr19:10221639-10221943(+)$1	304	125	150	8.7126
fffffeeeeennnnneeeee]ffff	chr15:28501269-28501540(-)$1	271	205	230	9.7684
""eeeeecccnnnnnccc22eeeee	chr19:19120921-19121223(-)$1	302	174	199	10.8214
eeeee[ddddnnnnndddd22eeee	chr3:128840308-128840628(-)$1	320	60	85	12.6794
d[ccc[ddddlllddddcccdddd2	chr16:448084-448343(+)$1	259	24	49	7.8733
dddda[ddddmmmmdddd22a]ddd	chr19:1104614-1104883(+)$1	269	212	237	8.4559
:dddd[ddddnnnnndddd]dddd:	chr14:56103091-56103354(+)$1	263	19	44	9.7247
ccc"""ddddmmmmdddd333ccch	chr9:79932422-79932679(+)$1	257	13	38	9.4182
cc!!ddddccclllccc]ddddccc	chr15:66084350-66084611(-)$1	261	147	172	7.4444
!bb!!a[cccnnnnnccc]a22bb2	chr5:79946614-79946867(-)$1	253	120	145	9.7167
e[dddd[cccnnnnncccdddd]ee	chr19:15442543-15442792(-)$1	249	137	162	9.7538
e:ccc[ddddnnnnndddd333ccc	chr17:73997298-73997555(+)$1	257	203	228	11.8699
ggg[acccooooooccc22a]gggg	chr16:30959244-30959523(+)$1	279	79	104	7.4995
dddd!!ddddnnnnndddd22dddd	chr17:58469149-58469460(-)$1	311	44	69	12.0085
ccc[eeeeeooooooeeeee]ccca	chr19:54041190-54041448(+)$1	258	224	249	8.5608
ddd!!eeeeennnnneeeee22ddd	chr10:105361303-105361573(-)$1	270	101	126	10.1907
fffff[a[bbnnnnnbb]a]fffff	chr1:201123359-201123658(-)$1	299	39	64	8.8281
$$eeeee[bbnnnnnbb]eeeee22	chr17:62499546-62499769(-)$1	223	178	203	8.4153
ffffffddddnnnnndddd]fffff	chr3:9512276-9512526(+)$1	250	121	146	11.2104
bb[cccddddnnnnndddd]ccc]b	chr9:711127-711390(+)$1	263	91	116	11.2516
[bb[eeeeeooooooeeeee]bb]b	chr6:149638871-149639164(+)$1	293	62	87	7.7059
[dddd[ddddnnnnndddd]dddd]	chr11:18034120-18034395(-)$1	275	119	144	11.8053
eee####bboooooobb4444eeee	chr8:25315651-25315919(-)$1	268	190	215	8.1299
dd"""ddddoooooodddd333ddd	chr5:79946686-79946961(-)$1	275	67	92	10.5045
e"""ggggggglllggggggg]eee	chr12:26985854-26986151(-)$1	297	33	58	7.3380
==========nnnnn==========	chr2:242707567-242707861(+)$1	294	53	78	10.7335
ggggg[ddddmmmmdddd333gggg	chr2:191513658-191513921(+)$1	263	19	44	9.5800
g[eeeee[bboooooobb333eeee	chr7:27153331-27153580(-)$1	249	141	166	8.2508
ee[dddd!!annnnna22dddd22e	chr7:127670441-127670752(+)$1	311	173	198	8.8548
eeeeeddddoooooodddd]eeeee	chr17:7082312-7082566(-)$1	254	148	173	9.9469
eeeeeeeeeennnnneeeee]eeee	chr17:45772827-45773073(+)$1	246	143	168	10.5570
c!!a!!ddddnnnnndddd]a22cc	chr9:117044498-117044709(+)$1	211	179	204	12.6615
!!eeeee[ddddllldddd22eeee	chr2:62932897-62933152(+)$1	255	148	173	8.9262
bbbb!!ddddnnnnndddd4444bb	chr3:184102284-184102582(+)$1	298	187	212	11.2684
$$$$$eeeeennnnneeeeehhhhh	chr6:30545522-30545779(+)$1	257	203	228	8.8701
ff####ddddmmmmdddd22fffff	chr7:32931177-32931441(-)$1	264	131	156	8.6651
ggg[a!!ddddmmmmdddd333a]g	chr5:176980204-176980472(-)$1	268	218	243	9.4222
f[bb[a[cccnnnnnccc]abb]ff	chr6:170123960-170124248(-)$1	288	13	38	9.3483
fff[a[ddddmmmmdddd]a]ffff	chr19:2270278-2270549(+)$1	271	36	61	8.8497
:eeeeeddddnnnnndddd]eeeee	chr1:161087990-161088280(+)$1	290	2	27	11.2317
ffff!!ddddnnnnnddddffffff	chr15:64752854-64753156(+)$1	302	179	204	11.4886
[bb[a[ddddnnnnndddd]a]bb]	chr3:38207235-38207502(+)$1	267	4	29	12.0965
ee####ddddmmmmdddd22eeeee	chr17:74380013-74380280(+)$1	267	33	58	9.2173
e"""a[ddddnnnnndddda]eeee	chr19:42788461-42788740(+)$1	279	221	246	13.2054
d!!bb####annnnna4444bb22d	chr2:54197821-54198044(-)$1	223	32	57	8.6920
$$$gggggggnnnnnggggggg]hh	chr15:28508131-28508416(-)$1	285	218	243	9.0800

#otherMatches

#Seq PSSM
AGAUUCUGUGGGACAUACAGGGUCU	chr16:447942-448197(+)$1	255	139	164	10.7335
GGGGGAAGGGGAUGUCCUACCCUCC	chr17:7477029-7477290(+)$1	261	126	151	8.7374
gcaggccggcggcuggccggccggg	chr14:23791035-23791282(+)$1	247	16	41	9.8836
UGGGCUgccgggccgggcggggggc	chr10:21823278-21823534(+)$1	256	183	208	8.9229
CAGGGGCCGGAAUCGCGGGGCGCgg	chr4:2935877-2936133(-)$1	256	49	74	9.6499
GGCGGGGGCCCAGAGGGGCUUCCCG	chr19:10221639-10221943(+)$1	304	125	150	8.7126
GCAGUCGGCCGCCCAGGCCGUGCUG	chr15:28501269-28501540(-)$1	271	205	230	9.7684
GACCUCAGCAGACUGUGCAGUGAGG	chr19:19120921-19121223(-)$1	302	174	199	10.8214
CCCGCGGGGCAccggguccgggcgg	chr3:128840308-128840628(-)$1	320	60	85	12.6794
GCUCCUCUGGAAACCAGGGACCCGA	chr16:448084-448343(+)$1	259	24	49	7.8733
GCCCCAGCGUGCAGGCGCAGGAGGG	chr19:1104614-1104883(+)$1	269	212	237	8.4559
AAGUAGAAAUUCUGUGUUUGUGCUA	chr14:56103091-56103354(+)$1	263	19	44	9.7247
GACAUACCUAUUACUAGGAAAGUCu	chr9:79932422-79932679(+)$1	257	13	38	9.4182
CUAAGCGGGCUCAGAGCGCCGCGGC	chr15:66084350-66084611(-)$1	261	147	172	7.4444
AGGGAAAGAUGAAAAAUUAUAACCA	chr5:79946614-79946867(-)$1	253	120	145	9.7167
ccggcccgggUAAGUCCCGGCCUGG	chr19:15442543-15442792(-)$1	249	137	162	9.7538
UGGCCAUGGAUAUGUUCCAGAAGGU	chr17:73997298-73997555(+)$1	257	203	228	11.8699
CUUGAACAUUCAUCUGUACUGAAGU	chr16:30959244-30959523(+)$1	279	79	104	7.4995
GGUGGGGGCGGGGGACGCCGACACC	chr17:58469149-58469460(-)$1	311	44	69	12.0085
ACGAGGCUGACGCGGCGGCCCUGUC	chr19:54041190-54041448(+)$1	258	224	249	8.5608
GUGGGGGGUGGACAACAUUCAACAC	chr10:105361303-105361573(-)$1	270	101	126	10.1907
AGAGGGCGGGGACAACUGGGUCUUU	chr1:201123359-201123658(-)$1	299	39	64	8.8281
CGGUGGUGCUCCUAAGGGACCACAA	chr17:62499546-62499769(-)$1	223	178	203	8.4153
CCUCGAGCAGAUGGACUGUAUCGAG	chr3:9512276-9512526(+)$1	250	121	146	11.2104
CCUUCAUGUCACCAAGACACUGAUG	chr9:711127-711390(+)$1	263	91	116	11.2516
ggcggccggagggaguuggcggcgg	chr6:149638871-149639164(+)$1	293	62	87	7.7059
GGUCAGGGCCGGAGGGGCUGUGGCG	chr11:18034120-18034395(-)$1	275	119	144	11.8053
CCCAAGAACGGAAAGGUAAcggggg	chr8:25315651-25315919(-)$1	268	190	215	8.1299
AGAUUUCAACUCAACUUGACCACUC	chr5:79946686-79946961(-)$1	275	67	92	10.5045
CCGGGCGGCUGUGACGGCCGCAGCG	chr12:26985854-26986151(-)$1	297	33	58	7.3380
GCCAUCCUGGACAGGCCGGGGUGGC	chr2:242707567-242707861(+)$1	294	53	78	10.7335
UCCCAAUGUGACAGCGCGggguggg	chr2:191513658-191513921(+)$1	263	19	44	9.5800
CUGGAGCAGCGAGGCGGCCACGCUC	chr7:27153331-27153580(-)$1	249	141	166	8.2508
GCGCCGUGAGGUAGACGAACGGGAG	chr7:127670441-127670752(+)$1	311	173	198	8.8548
ACAUCAGAGGAUGGAUUCUGGAUGU	chr17:7082312-7082566(-)$1	254	148	173	9.9469
CUGUGGAGGGGCCGACCCUCGCGCA	chr17:45772827-45773073(+)$1	246	143	168	10.5570
CUCCCUGGACCCUCCGUCCUGUUGG	chr9:117044498-117044709(+)$1	211	179	204	12.6615
GCCGUGGCUGGCUUGGCUGUUCCAU	chr2:62932897-62933152(+)$1	255	148	173	8.9262
CGCCAUGACAGUGAGUGUCCUUAGG	chr3:184102284-184102582(+)$1	298	187	212	11.2684
CAUCUGGGUUCCACCAACCCCUUUC	chr6:30545522-30545779(+)$1	257	203	228	8.8701
GGAAGAGGCGGCGGCGCCAGCCUUC	chr7:32931177-32931441(-)$1	264	131	156	8.6651
CGGGCAGCAGGGGACUCUGGGAGGC	chr5:176980204-176980472(-)$1	268	218	243	9.4222
ggcgacggccauggcgguggcggcg	chr6:170123960-170124248(-)$1	288	13	38	9.3483
CGUGCGCUGCGGGAGCGGGGAGCGC	chr19:2270278-2270549(+)$1	271	36	61	8.8497
GGCCGCGGUGAAUCCCACCUGCGGU	chr1:161087990-161088280(+)$1	290	2	27	11.2317
cgcggUGAGUCCGGAGCUUUGUGUG	chr15:64752854-64753156(+)$1	302	179	204	11.4886
GCUGUUCCGAGACGAUUGGUGGGGG	chr3:38207235-38207502(+)$1	267	4	29	12.0965
GCCUCAGGCUCGGUAGCCCAGCUGC	chr17:74380013-74380280(+)$1	267	33	58	9.2173
cagagacccccgcguggggcggccg	chr19:42788461-42788740(+)$1	279	221	246	13.2054
CGACGAAGACGCGGAGGAGGCGGAG	chr2:54197821-54198044(-)$1	223	32	57	8.6920
GCUGUGGAAGUCAGUUUUCCAUUGC	chr15:28508131-28508416(-)$1	285	218	243	9.0800

#DB
((((((((((.....))))))))))	chr16:447942-448197(+)$1	1	139	164	10.7335
(((((.((((....)))).))))))	chr17:7477029-7477290(+)$1	1	126	151	8.7374
.(.(((((((.....))))))).).	chr14:23791035-23791282(+)$1	1	16	41	9.8836
((..(((((......)))))....)	chr10:21823278-21823534(+)$1	1	183	208	8.9229
(.(.(.((.(.....).)).).).)	chr4:2935877-2936133(-)$1	1	49	74	9.6499
..(((((((((....)))).)))))	chr19:10221639-10221943(+)$1	1	125	150	8.7126
((((((((((.....))))).))))	chr15:28501269-28501540(-)$1	1	205	230	9.7684
..((((((((.....)))..)))))	chr19:19120921-19121223(-)$1	1	174	199	10.8214
(((((.((((.....))))..))))	chr3:128840308-128840628(-)$1	1	60	85	12.6794
(.(((.((((...))))))))))).	chr16:448084-448343(+)$1	1	24	49	7.8733
(((((.((((....))))..).)))	chr19:1104614-1104883(+)$1	1	212	237	8.4559
.((((.((((.....)))).)))).	chr14:56103091-56103354(+)$1	1	19	44	9.7247
(((...((((....))))...)))(	chr9:79932422-79932679(+)$1	1	13	38	9.4182
((..(((((((...))).)))))))	chr15:66084350-66084611(-)$1	1	147	172	7.4444
.((..(.(((.....))).)..)).	chr5:79946614-79946867(-)$1	1	120	145	9.7167
(.((((.(((.....))))))).))	chr19:15442543-15442792(-)$1	1	137	162	9.7538
).(((.((((.....))))...)))	chr17:73997298-73997555(+)$1	1	203	228	11.8699
(((.((((......)))..).))))	chr16:30959244-30959523(+)$1	1	79	104	7.4995
((((..((((.....))))..))))	chr17:58469149-58469460(-)$1	1	44	69	12.0085
(((.(((((......))))).))))	chr19:54041190-54041448(+)$1	1	224	249	8.5608
(((..(((((.....)))))..)))	chr10:105361303-105361573(-)$1	1	101	126	10.1907
(((((.(.((.....)).).)))))	chr1:201123359-201123658(-)$1	1	39	64	8.8281
..(((((.((.....)).)))))..	chr17:62499546-62499769(-)$1	1	178	203	8.4153
((((((((((.....)))).)))))	chr3:9512276-9512526(+)$1	1	121	146	11.2104
((.(((((((.....)))).))).)	chr9:711127-711390(+)$1	1	91	116	11.2516
.((.(((((......))))).)).)	chr6:149638871-149639164(+)$1	1	62	87	7.7059
.((((.((((.....)))).)))).	chr11:18034120-18034395(-)$1	1	119	144	11.8053
(((....((......))....))))	chr8:25315651-25315919(-)$1	1	190	215	8.1299
((...((((......))))...)))	chr5:79946686-79946961(-)$1	1	67	92	10.5045
(...(((((((...))))))).)))	chr12:26985854-26986151(-)$1	1	33	58	7.3380
((((((((((.....))))))))))	chr2:242707567-242707861(+)$1	1	53	78	10.7335
(((((.((((....))))...))))	chr2:191513658-191513921(+)$1	1	19	44	9.5800
(.(((((.((......))...))))	chr7:27153331-27153580(-)$1	1	141	166	8.2508
((.((((..(.....)..))))..)	chr7:127670441-127670752(+)$1	1	173	198	8.8548
(((((((((......)))).)))))	chr17:7082312-7082566(-)$1	1	148	173	9.9469
((((((((((.....))))).))))	chr17:45772827-45773073(+)$1	1	143	168	10.5570
(..(..((((.....)))).)..))	chr9:117044498-117044709(+)$1	1	179	204	12.6615
..(((((.((((...))))..))))	chr2:62932897-62933152(+)$1	1	148	173	8.9262
))((..((((.....))))....))	chr3:184102284-184102582(+)$1	1	187	212	11.2684
.....(((((.....))))))))))	chr6:30545522-30545779(+)$1	1	203	228	8.8701
((....((((....))))..)))))	chr7:32931177-32931441(-)$1	1	131	156	8.6651
(((.(..((((....))))...).)	chr5:176980204-176980472(-)$1	1	218	243	9.4222
(.((.(.(((.....))).))).))	chr6:170123960-170124248(-)$1	1	13	38	9.3483
(((.(.((((....)))).).))))	chr19:2270278-2270549(+)$1	1	36	61	8.8497
.(((((((((.....)))).)))))	chr1:161087990-161088280(+)$1	1	2	27	11.2317
((((..((((.....))))))))))	chr15:64752854-64753156(+)$1	1	179	204	11.4886
.((.(.((((.....)))).).)).	chr3:38207235-38207502(+)$1	1	4	29	12.0965
((....((((....))))..)))))	chr17:74380013-74380280(+)$1	1	33	58	9.2173
(...(.((((.....))))).))))	chr19:42788461-42788740(+)$1	1	221	246	13.2054
(..((....(.....)....))..)	chr2:54197821-54198044(-)$1	1	32	57	8.6920
...(((((((.....))))))).))	chr15:28508131-28508416(-)$1	1	218	243	9.0800

#PSSM
e : 0.21	d : 0.13	f : 0.13	g : 0.09	[ : 0.07	c : 0.07	! : 0.05	$ : 0.05	= : 0.03	: : 0.03	b : 0.03	" : 0.01	
e : 0.15	f : 0.11	d : 0.11	[ : 0.09	b : 0.09	g : 0.07	! : 0.07	" : 0.05	c : 0.05	$ : 0.05	= : 0.03	a : 0.01	: : 0.01	
e : 0.19	d : 0.11	f : 0.09	b : 0.09	g : 0.07	! : 0.07	c : 0.07	[ : 0.05	" : 0.05	= : 0.03	$ : 0.03	# : 0.03	a : 0.01	
e : 0.17	[ : 0.13	d : 0.11	g : 0.07	! : 0.07	f : 0.07	" : 0.07	c : 0.05	# : 0.05	b : 0.05	= : 0.03	a : 0.01	$ : 0.01	
e : 0.23	a : 0.13	! : 0.11	g : 0.09	d : 0.09	f : 0.05	c : 0.05	# : 0.05	= : 0.03	" : 0.03	$ : 0.01	[ : 0.01	b : 0.01	
[ : 0.25	e : 0.25	d : 0.09	! : 0.09	# : 0.07	g : 0.05	= : 0.03	a : 0.03	c : 0.03	" : 0.01	f : 0.01	
d : 0.49	e : 0.23	g : 0.05	[ : 0.05	= : 0.03	# : 0.03	b : 0.01	c : 0.01	a : 0.01	! : 0.01	
d : 0.50	e : 0.13	c : 0.09	[ : 0.07	g : 0.05	= : 0.03	b : 0.03	! : 0.01	# : 0.01	
d : 0.50	e : 0.13	c : 0.09	b : 0.07	g : 0.05	= : 0.03	[ : 0.01	o : 0.01	! : 0.01	# : 0.01	
d : 0.47	o : 0.13	c : 0.09	e : 0.07	g : 0.05	a : 0.05	b : 0.05	= : 0.03	
n : 0.58	o : 0.15	m : 0.13	d : 0.05	l : 0.01	c : 0.01	g : 0.01	
n : 0.58	m : 0.17	o : 0.15	l : 0.05	d : 0.01	
n : 0.58	m : 0.17	o : 0.15	l : 0.07	
n : 0.58	m : 0.17	o : 0.15	l : 0.05	d : 0.01	
n : 0.58	d : 0.15	o : 0.13	m : 0.03	c : 0.03	g : 0.01	l : 0.01	
d : 0.50	e : 0.13	c : 0.11	g : 0.05	a : 0.05	b : 0.05	= : 0.03	o : 0.01	
d : 0.50	e : 0.13	c : 0.11	b : 0.07	g : 0.05	= : 0.03	] : 0.01	2 : 0.01	4 : 0.01	
d : 0.49	e : 0.13	c : 0.09	g : 0.05	] : 0.05	= : 0.03	b : 0.03	2 : 0.03	4 : 0.03	
d : 0.41	e : 0.15	2 : 0.09	] : 0.07	g : 0.05	3 : 0.05	= : 0.03	4 : 0.03	b : 0.01	c : 0.01	a : 0.01	
] : 0.21	e : 0.15	2 : 0.13	3 : 0.11	a : 0.09	g : 0.07	d : 0.05	4 : 0.05	= : 0.03	c : 0.01	f : 0.01	
] : 0.13	e : 0.11	d : 0.11	3 : 0.11	2 : 0.09	g : 0.07	a : 0.07	f : 0.07	4 : 0.05	= : 0.03	b : 0.03	c : 0.01	h : 0.01	
e : 0.23	d : 0.13	f : 0.11	g : 0.09	] : 0.07	c : 0.05	2 : 0.05	3 : 0.05	b : 0.05	= : 0.03	4 : 0.03	h : 0.01	
e : 0.25	d : 0.13	f : 0.11	c : 0.09	] : 0.07	g : 0.05	b : 0.05	2 : 0.05	= : 0.03	4 : 0.03	a : 0.03	h : 0.01	
e : 0.25	f : 0.13	d : 0.13	c : 0.09	] : 0.07	g : 0.05	b : 0.05	2 : 0.05	= : 0.03	h : 0.03	a : 0.01	4 : 0.01	
e : 0.29	f : 0.13	d : 0.11	g : 0.07	] : 0.05	2 : 0.05	h : 0.05	c : 0.05	b : 0.05	= : 0.03	: : 0.01	a : 0.01	

#score	498.563260840555
#seq	51
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_UTR_m1_run2.txt

#BEAR
!!ggggggg[ccc[ddddmmmmdddd22cccggggggg]d	chr3:48642031-48642314(-)$1	283	80	120	15.4008
c[eeeee!!a!!bb!!bbmmmmbb22bb22a]eeeeeccc	chr22:50013859-50014165(-)$1	306	141	181	12.2131
:cccdddd####ccccccmmmmccc]ccc4444dddd]cc	chr3:142839055-142839339(+)$1	284	204	244	12.7953
eeeee[ccc!!bb!!ccclllccc22bb22ccc]eeeee:	chr11:44117204-44117470(+)$1	266	186	226	11.7147
"""a[ggggggg!!a[ccclllccc]a22ggggggg]a22	chr10:111987123-111987401(+)$1	278	37	77	15.4023
g####ffffff####cccmmmmccc22ffffffggggggg	chr8:74884210-74884507(-)$1	297	94	134	14.8354
%%bb####ccc"""cccooooooccc4444ccc4444bb5	chr1:151162429-151162704(-)$1	275	222	262	13.0726
eee####ccc[ccc[cccmmmmccc]ccc]ccc333eeee	chr3:122807914-122808175(+)$1	261	187	227	15.1937
""cccdddd[ccc[bboooooobbccc]dddd]cccbb]d	chr7:150780135-150780397(-)$1	262	181	221	12.4413
####bb"""ccc"""cccmmmmccc333ccc333bb333d	chr17:7465263-7465538(+)$1	275	85	125	17.4238
eeee"""ccc[cccacccmmmmccc]a]ccc]ccc22eee	chr12:120907161-120907575(-)$1	414	262	302	15.2868
f"""ccc[a!!bb[ccclllcccbb333a]ccc22fffff	chr1:153918926-153919191(-)$1	265	131	171	13.4655
!bb####===========mmmm===========22bb]ee	chr17:40761127-40761392(-)$1	265	161	201	14.1702
[hhhhhhhh[ccc[ddddmmmmdddd333ccc]hhhhhhh	chr22:21998435-21998663(+)$1	228	70	110	13.5413
eeee[a[dddd[a!!cccmmmmccc]a]dddd]a]eeeee	chr4:57301455-57301780(-)$1	325	144	184	13.7794
[eeeeeccc[bb[bb[cccmmmmccc]bb]bb]ccc]eee	chr4:78078349-78078664(+)$1	315	81	121	12.8590
ggggg"""dddd!!ddddmmmmdddd22dddd4444gggg	chr4:110650915-110651259(-)$1	344	169	209	13.5833
ddd[ccc####a"""cccnnnnnccc22a4444ccc]ddd	chr19:3062181-3062463(-)$1	282	96	136	14.2642
b[dddd"""ccc!!bb[ammmma]bb22ccc4444dddd]	chr19:2236081-2236355(-)$1	274	222	262	13.7364
a[ccc[ccc[ccc[acccmmmmccc333a]cccccc]ccc	chr16:11036097-11036387(-)$1	290	73	113	18.6472
dddd[ccc!!cccbb!!bbmmmmbb4444bb]ccc22ccc	chr2:61765124-61765389(-)$1	265	40	80	12.9590
!!ccc[ggggggg"""cccmmmmccc333ggggggg]ccc	chrX:20284609-20284862(-)$1	253	6	46	16.7216
eee[ccc[dddd!!a[bbmmmmbb]a22dddd]ccc]eee	chr3:41241024-41241262(+)$1	238	32	72	14.6044
dddd"""ffffff"""bbmmmmbb333ffffff]dddd]c	chr19:36726496-36726774(+)$1	278	49	89	14.0655
c!!bb[a[dddd[a[cccmmmmccca]dddd]a]bb22cc	chr15:40987394-40987708(+)$1	314	75	115	13.8771
hhhhhhh!!ccc!!cccoooooocccccc]hhhhhhhhcc	chr8:101963093-101963357(-)$1	264	216	256	12.7223
b[bb[dddd[bb!!cccooooooccc22bb]dddd]bb]b	chr2:230786496-230786759(-)$1	263	90	130	12.3158
[ggggggg!!cccbb[bboooooobb]bb]ccc22ggggg	chr1:19948490-19948742(+)$1	252	109	149	12.9738
dddd!!ggggggg[ddddmmmmdddd333ggggggg22dd	chr11:118926679-118926905(-)$1	226	53	93	14.5255
ddd[a[bbffffff!!ccclllccc333ffffff]bb]a]	chr1:1822216-1822576(-)$1	360	250	290	12.7884
eccc[bbccc[ccca[bbmmmmbb]a]cccccc]bb]ccc	chr1:2323245-2323498(+)$1	253	53	93	14.4741
""cccccc[ccc!!eeeeellleeeee22ccc]ccc]ccc	chr6:43737928-43738161(+)$1	233	22	62	13.2183
ccc[iiiiiiiii[bb[bbmmmmbb22bbiiiiiiiiicc	chr9:140099878-140100131(-)$1	253	153	193	13.3445
c[dddd!!ffffffa[bbmmmmbb]a]ffffff]dddd]c	chr16:447962-448207(+)$1	245	201	241	12.9792
[bb"""ccc!!bb[a[bbnnnnnbba]bb22cccbb]eee	chr20:62331063-62331291(-)$1	228	120	160	12.1948
===eeeeebb[bb[cccooooooccc]bb]bb]eeeee]=	chr1:162531392-162531667(+)$1	275	17	57	12.0954
!!ccc!!bb[ccc[cccmmmmcccccc]bb22cccddddC	chr6:32157579-32157840(-)$1	261	205	245	12.3429
[a####ggggggg!!abbmmmmbb]a22ggggggg22a]e	chrX:102470509-102470788(+)$1	279	36	76	15.6150
=======[dddd!!ddddllldddd333dddd]=======	chr5:139027972-139028268(+)$1	296	239	279	13.7617
ccc"""eeeeebb"""bbmmmmbb333bb]eeeee]ccc]	chr16:448089-448363(+)$1	274	176	216	13.9563
!dddd[==========bbmmmmbb4444==========22	chr14:75520197-75520463(-)$1	266	78	118	15.5691
[ccc!!ffffff"""cccmmmmccc333ffffffcccccc	chr11:44117270-44117503(+)$1	233	152	192	16.5723
c[dddd[==========mmmm==========22ddddccc	chr3:51422663-51422928(+)$1	265	126	166	12.9090
eee[ggggggg####bboooooobb4444ggggggg]eee	chr5:142782920-142783230(-)$1	310	94	134	14.5441
ggccc[ccc[bb[bbcccmmmmccc333bb]bb]cccccc	chr1:154298031-154298278(+)$1	247	43	83	15.5579
ccccccccc[ccc[eeeeemmmmeeeee]ccc]ccc]ccc	chr6:10747948-10748214(+)$1	266	81	121	12.2693
[eeeee!!a!!bb[bboooooobbbb22a]eeeee]bbcc	chr10:98346473-98346743(-)$1	270	229	269	12.5397
###ggggggg[cccddddmmmmdddd22cccgggggggff	chr7:140402654-140402910(+)$1	256	7	47	14.3529
d!!bb[ffffff[a[cccooooooccc]a]ffffffbb44	chr8:25315623-25315952(-)$1	329	21	61	12.1867
++ccc!!ccc####a[ccclllccc]a333ccc22ccc33	chr4:2936006-2936281(-)$1	275	31	71	14.8395
[ggggggg!!bb!!cccnnnnnccc22bb]ggggggg]cc	chr16:448876-449130(+)$1	254	24	64	14.0222
]eeeeeccc!!ddddcccooooooccc4444dddd22ccc	chr6:10749334-10749574(+)$1	240	151	191	11.9180
""bb!!ccc[ccc[ddddmmmmdddd]ccc]cccbb22cc	chr3:195635820-195636063(-)$1	243	46	86	14.4515
"""ccc[a!!dddd[cccmmmmccc]dddd]a]ccc]hhh	chr3:160283039-160283342(-)$1	303	63	103	14.0965
c[dddd!!ffffffa[bbmmmmbb]a]ffffff]dddd]c	chr16:448010-448262(+)$1	252	153	193	12.9792
====[bb"""a"""ddddmmmmdddd4444a333bb22==	chr3:138553468-138553740(-)$1	272	27	67	14.6398
!!hhhhhhhh[a!!a[aooooooa]a22a]hhhhhhhh22	chr12:111180411-111180678(-)$1	267	206	246	13.3916
GGG============ccclllccc]============ccc	chrX:122993946-122994222(+)$1	276	29	69	12.9134
e[ccc[bb[cccccc[ccclllccc]ccc333cccbb]cc	chr3:38206951-38207254(+)$1	303	201	241	13.8453

#otherMatches

#Seq PSSM
CUGGUUGAUAUCUGGUUCCAGGGAACAAAGAAUCGGCCUG	chr3:48642031-48642314(-)$1	283	80	120	15.4008
cucacuugggaggugacaagcuugggacagcaggguggcc	chr22:50013859-50014165(-)$1	306	141	181	12.2131
ACCCCUCGAAGGUGCGGGGACCCCCAGCGGAAGCGAGAGG	chr3:142839055-142839339(+)$1	284	204	244	12.7953
GCCGUGGCCGAGGUAAGCGCGGCUCUCCAgggcggcggcc	chr11:44117204-44117470(+)$1	266	186	226	11.7147
gagggugcgcacggaggguggggCUGUGGGUGUGCGGCGA	chr10:111987123-111987401(+)$1	278	37	77	15.4023
CGGAACCCACCGGAGCAGGCAGCUGGGGGUGGGGGGGCGG	chr8:74884210-74884507(-)$1	297	94	134	14.8354
AGGCAAGAUCCGGGCCUGGGAAAAGGGAGGGGAGGAGGCA	chr1:151162429-151162704(-)$1	275	222	262	13.0726
AGAACCCGGAAUAAUGUACUGGUGCUUUACUCCAAAUCUG	chr3:122807914-122808175(+)$1	261	187	227	15.1937
UUGACGUUUGCUGUGGGGGAAGCCUGGGAAGCAGUCCUGU	chr7:150780135-150780397(-)$1	262	181	221	12.4413
ggagguggAGGUGGAGGUGGAAGCUGAAGCUGAAGCAGAG	chr17:7465263-7465538(+)$1	275	85	125	17.4238
UUCUACAAGUACGGCCGCAUCCGCGAGAUCGAGCUCAAGA	chr12:120907161-120907575(-)$1	414	262	302	15.2868
GGGAGCUGGGAGGACCGAGCCGGCCGAGCGAGCAGCGCGG	chr1:153918926-153919191(-)$1	265	131	171	13.4655
GCGCAGCGGGCCCUGGUGGAGGUGCUGGGGCCUUACGAGC	chr17:40761127-40761392(-)$1	265	161	201	14.1702
GUCUGCAGGGCCACUCUUGGCAGAGACUUUGGGUUUGUAG	chr22:21998435-21998663(+)$1	228	70	110	13.5413
UGGAGGAGUUGGGGAUCCGAGAGGAAUGUGGCGUGUUCGG	chr4:57301455-57301780(-)$1	325	144	184	13.7794
UCCGCGGCCGGCGUUGCGCCGCGGCGGAGGGUGGGCGCGC	chr4:78078349-78078664(+)$1	315	81	121	12.8590
CGUGGAUAUGGAGCUGGCUGCUGCCAAGUCCGGGGCCCGC	chr4:110650915-110651259(-)$1	344	169	209	13.5833
cgcgcggggagggggcgcaggaagcgggcgaggccgggcg	chr19:3062181-3062463(-)$1	282	96	136	14.2642
cgagacagugccaggggcgggaggccggggccggggucug	chr19:2236081-2236355(-)$1	274	222	262	13.7364
GGAGGGCUACGCGGCGGCCGCAGCCAUGGGUGCUGGGCCU	chr16:11036097-11036387(-)$1	290	73	113	18.6472
cgggagcuacagcaucagcaagagcaacaguagcuacagc	chr2:61765124-61765389(-)$1	265	40	80	12.9590
cgccgccgccgccgcugccgUGGGGCUCgggcggcgacgg	chrX:20284609-20284862(-)$1	253	6	46	16.7216
CGGAGACGGAGGAAGGUCUGAGGAGCAGCUUCAGUCCCCG	chr3:41241024-41241262(+)$1	238	32	72	14.6044
UGUACUCCAUUUUAGAAGAAGCCUGAGAAGAUGAUGCACA	chr19:36726496-36726774(+)$1	278	49	89	14.0655
CAUCUGGGUUGUGCGCAGAAGGCUGGGGCAAGCGAGUAGA	chr15:40987394-40987708(+)$1	314	75	115	13.8771
GGCGGGUGAGCCUGAGCAUAGCCGCUGGUGGCCCGCUCGG	chr8:101963093-101963357(-)$1	264	216	256	12.7223
ggggggUGGGGGGAGCUAGUGGAAGUUACUGCCGCGCCAC	chr2:230786496-230786759(-)$1	263	90	130	12.3158
GUUUUGGAUUAGGAAUUGUUUUCUCACUUACCUUCUUUAA	chr1:19948490-19948742(+)$1	252	109	149	12.9738
GCAGAGGCCGAGGAGGCGAGUCUGUUGGGCCUUGGUGGCU	chr11:118926679-118926905(-)$1	226	53	93	14.5255
GCGACGACCUGCCGAGCGGCGGCCGAGGCGGCGGUGUGGG	chr1:1822216-1822576(-)$1	360	250	290	12.7884
CCGGAGCCGGAGCGCAGCGCCUGCGGCCGCCCGUGCCCCG	chr1:2323245-2323498(+)$1	253	53	93	14.4741
GAGGCUUGGGGCAGCCGGGUAGCUCGGAGGUCGUGGCGCU	chr6:43737928-43738161(+)$1	233	22	62	13.2183
GCCUCUCGCUCGCAGCAGCGGCGGCAGGCGCGGGCGAGGG	chr9:140099878-140100131(-)$1	253	153	193	13.3445
CUGGGACUAUAGGAAGGUGAGGACGUCUUCUGUUUCCCUG	chr16:447962-448207(+)$1	245	201	241	12.9792
GAGGGAGCUGACUGAUGCAAAAAGCUGAGGGGGCCUGCUG	chr20:62331063-62331291(-)$1	228	120	160	12.1948
UGGCCGGGGCUGGCGCUCCACUUggcccccgcucccggcc	chr1:162531392-162531667(+)$1	275	17	57	12.0954
UUGGUGAGUGGGGAGCCUGGGGGCCCUGGCGAGCCUCCCG	chr6:32157579-32157840(-)$1	261	205	245	12.3429
cggauggcggUAGUUCCUAGCUAGCGUUCUGCUGCAGCAG	chrX:102470509-102470788(+)$1	279	36	76	15.6150
GAGGGGGAGGAGGGGCAGGUGCUGCAGGCUCCCCCCCCUC	chr5:139027972-139028268(+)$1	296	239	279	13.7617
GCGACAGGCCUUGAAACUCCACAGCAGCACAGGCCCCGUC	chr16:448089-448363(+)$1	274	176	216	13.9563
CUCUCUCUUUUUACCCCCCUUAGGCUGAGGGUAAAAAGCU	chr14:75520197-75520463(-)$1	266	78	118	15.5691
cggcggccgggcgggcgcUGAAGCGAGGGCUCGGGCCUCC	chr11:44117270-44117503(+)$1	233	152	192	16.5723
CCACGCAGGGGCUGGCGGUGGCGCUGGCUCUGAGCGUGCU	chr3:51422663-51422928(+)$1	265	126	166	12.9090
UCUGUGACGGGAGCCCGAGUCACCGCCUGCCCGUCGGGGA	chr5:142782920-142783230(-)$1	310	94	134	14.5441
gggggcgggagcccguggggagccgagccgagcgcccccc	chr1:154298031-154298278(+)$1	247	43	83	15.5579
GCGCACGCAAUCGCGUUUCCGGAGAGACCUGGCUGCUGUG	chr6:10747948-10748214(+)$1	266	81	121	12.2693
CGGGCGGACGAGCACGAACACACGGUGAggcgccccggcc	chr10:98346473-98346743(-)$1	270	229	269	12.5397
GCAGUGCCGGUGGUGGUGUGCACAUUGAGCCCCGGUAUAG	chr7:140402654-140402910(+)$1	256	7	47	14.3529
GGGUGUGGGACAGAGUGCGUGCGUGUGGUGUGUCCCCAAG	chr8:25315623-25315952(-)$1	329	21	61	12.1867
gacgggaccggggacgcgcaggguggggggcgggaccggg	chr4:2936006-2936281(-)$1	275	31	71	14.8395
GGUGACCCCUGGGCUCUGGCUGGGAAACCCGGGUCGUGGG	chr16:448876-449130(+)$1	254	24	64	14.0222
AGCCCCUCUUCCCAUUGUGAGUAGACAGUAAAUGGUUAGA	chr6:10749334-10749574(+)$1	240	151	191	11.9180
GAGGCAGCCCCGCAGUGCAGGAGCGCGGCGAGGCCCGGGC	chr3:195635820-195636063(-)$1	243	46	86	14.4515
GGAGCUGCAGUCGCGCUGGGGUUAGGGCGGGGGGGCGGGC	chr3:160283039-160283342(-)$1	303	63	103	14.0965
CUGGGACUAUAGGAAGGUGAGGACGUCUUCUGUUUCCCUG	chr16:448010-448262(+)$1	252	153	193	12.9792
UGCGGCGGAGCGGGCCAUGGCAGUGGGGAGGGGGCGAGUG	chr3:138553468-138553740(-)$1	272	27	67	14.6398
AACGGCUGCUGGAAGGUAAGGGGGGCGGCGGGCGGCUGAA	chr12:111180411-111180678(-)$1	267	206	246	13.3916
CGCGUGAGGGAGACGAAGGGACUUCCGUUUCCUUCACCUA	chrX:122993946-122994222(+)$1	276	29	69	12.9134
GGAGCAGGAGGCGAGGUCCGCCGGAGCUCUGAGCCCCCGC	chr3:38206951-38207254(+)$1	303	201	241	13.8453

#DB
..(((((((.(((.((((....))))..)))))))))).)	chr3:48642031-48642314(-)$1	1	80	120	15.4008
(.(((((..(..((..((....))..))..).))))))))	chr22:50013859-50014165(-)$1	1	141	181	12.2131
.(((((((....((((((....))).)))....)))).))	chr3:142839055-142839339(+)$1	1	204	244	12.7953
(((((.(((..((..(((...)))..))..))).))))).	chr11:44117204-44117470(+)$1	1	186	226	11.7147
...(.(((((((..(.(((...))).)..))))))).)..	chr10:111987123-111987401(+)$1	1	37	77	15.4023
(....((((((....(((....)))..)))))))))))))	chr8:74884210-74884507(-)$1	1	94	134	14.8354
..((....(((...(((......)))....)))....)).	chr1:151162429-151162704(-)$1	1	222	262	13.0726
(((....(((.(((.(((....))).))).)))...))))	chr3:122807914-122808175(+)$1	1	187	227	15.1937
..(((((((.(((.((......))))).)))).))))).)	chr7:150780135-150780397(-)$1	1	181	221	12.4413
....((...(((...(((....)))...)))...))...)	chr17:7465263-7465538(+)$1	1	85	125	17.4238
((((...(((.(((((((....))).).))).)))..)))	chr12:120907161-120907575(-)$1	1	262	302	15.2868
(...(((.(..((.(((...)))))...).)))..)))))	chr1:153918926-153919191(-)$1	1	131	171	13.4655
.((....(((((((((((....)))))))))))..)).))	chr17:40761127-40761392(-)$1	1	161	201	14.1702
.((((((((.(((.((((....))))...))).)))))))	chr22:21998435-21998663(+)$1	1	70	110	13.5413
((((.(.((((.(..(((....))).).)))).).)))))	chr4:57301455-57301780(-)$1	1	144	184	13.7794
.((((((((.((.((.(((....))).)).)).))).)))	chr4:78078349-78078664(+)$1	1	81	121	12.8590
(((((...((((..((((....))))..))))....))))	chr4:110650915-110651259(-)$1	1	169	209	13.5833
(((.(((....(...(((.....)))..)....))).)))	chr19:3062181-3062463(-)$1	1	96	136	14.2642
(.((((...(((..((.(....).))..)))....)))).	chr19:2236081-2236355(-)$1	1	222	262	13.7364
(.(((.(((.(((.((((....)))...).)))))).)))	chr16:11036097-11036387(-)$1	1	73	113	18.6472
((((.(((..(((((..((....))....)).)))..)))	chr2:61765124-61765389(-)$1	1	40	80	12.9590
..(((.(((((((...(((....)))...))))))).)))	chrX:20284609-20284862(-)$1	1	6	46	16.7216
(((.(((.((((..(.((....)).)..)))).))).)))	chr3:41241024-41241262(+)$1	1	32	72	14.6044
((((...((((((...((....))...)))))).)))).)	chr19:36726496-36726774(+)$1	1	49	89	14.0655
(..((.(.((((.(.(((....)))).)))).).))..))	chr15:40987394-40987708(+)$1	1	75	115	13.8771
(((((((..(((..(((......)))))).))))))))))	chr8:101963093-101963357(-)$1	1	216	256	12.7223
(.((.((((.((..(((......)))..)).)))).)).)	chr2:230786496-230786759(-)$1	1	90	130	12.3158
.(((((((..(((((.((......)).)).)))..)))))	chr1:19948490-19948742(+)$1	1	109	149	12.9738
((((..(((((((.((((....))))...)))))))..))	chr11:118926679-118926905(-)$1	1	53	93	14.5255
(((.(.((((((((..(((...)))...)))))).)).).	chr1:1822216-1822576(-)$1	1	250	290	12.7884
)(((.(((((.((((.((....)).).)))))).)).)))	chr1:2323245-2323498(+)$1	1	53	93	14.4741
..((((((.(((..(((((...)))))..))).))).)))	chr6:43737928-43738161(+)$1	1	22	62	13.2183
(((.(((((((((.((.((....))..)))))))))))))	chr9:140099878-140100131(-)$1	1	153	193	13.3445
(.((((..(((((((.((....)).).)))))).)))).)	chr16:447962-448207(+)$1	1	201	241	12.9792
.((...(((..((.(.((.....))).))..))))).)))	chr20:62331063-62331291(-)$1	1	120	160	12.1948
((((((((((.((.(((......))).)).)).))))).)	chr1:162531392-162531667(+)$1	1	17	57	12.0954
..(((..((.(((.(((....)))))).))..))))))))	chr6:32157579-32157840(-)$1	1	205	245	12.3429
.(....(((((((..(((....)).)..)))))))..).)	chrX:102470509-102470788(+)$1	1	36	76	15.6150
(((((((.((((..((((...))))...)))).)))))))	chr5:139027972-139028268(+)$1	1	239	279	13.7617
(((...(((((((...((....))...)).))))).))).	chr16:448089-448363(+)$1	1	176	216	13.9563
.((((.((((((((((((....))....))))))))))..	chr14:75520197-75520463(-)$1	1	78	118	15.5691
.(((..((((((...(((....)))...))))))))))))	chr11:44117270-44117503(+)$1	1	152	192	16.5723
(.((((.((((((((((....))))))))))..)))))))	chr3:51422663-51422928(+)$1	1	126	166	12.9090
(((.(((((((....((......))....))))))).)))	chr5:142782920-142783230(-)$1	1	94	134	14.5441
(((((.(((.((.(((((....)))...)).)).))))))	chr1:154298031-154298278(+)$1	1	43	83	15.5579
(((((((((.(((.(((((....))))).))).))).)))	chr6:10747948-10748214(+)$1	1	81	121	12.2693
.(((((..(..((.((......))))..).))))).))))	chr10:98346473-98346743(-)$1	1	229	269	12.5397
...(((((((.(((((((....))))..))))))))))))	chr7:140402654-140402910(+)$1	1	7	47	14.3529
(..((.((((((.(.(((......))).).))))))))..	chr8:25315623-25315952(-)$1	1	21	61	12.1867
..(((..(((....(.(((...))).)...)))..)))..	chr4:2936006-2936281(-)$1	1	31	71	14.8395
.(((((((..((..(((.....)))..)).))))))).))	chr16:448876-449130(+)$1	1	24	64	14.0222
.)))))(((..(((((((......)))....))))..)))	chr6:10749334-10749574(+)$1	1	151	191	11.9180
..((..(((.(((.((((....)))).))).)))))..))	chr3:195635820-195636063(-)$1	1	46	86	14.4515
...(((.(..((((.(((....))).)))).).))).)))	chr3:160283039-160283342(-)$1	1	63	103	14.0965
(.((((..(((((((.((....)).).)))))).)))).)	chr16:448010-448262(+)$1	1	153	193	12.9792
((((.((...(...((((....))))....)...))..))	chr3:138553468-138553740(-)$1	1	27	67	14.6398
..((((((((.(..(.(......).)..).))))))))..	chr12:111180411-111180678(-)$1	1	206	246	13.3916
((((((((((((((((((...))).))))))))))))(((	chrX:122993946-122994222(+)$1	1	29	69	12.9134
(.(((.((.((((((.(((...))).)))...))))).))	chr3:38206951-38207254(+)$1	1	201	241	13.8453

#PSSM
c : 0.13	e : 0.13	[ : 0.13	! : 0.10	d : 0.10	" : 0.08	g : 0.05	= : 0.05	# : 0.03	b : 0.03	: : 0.01	% : 0.01	f : 0.01	a : 0.01	h : 0.01	+ : 0.01	] : 0.01	G : 0.01	
e : 0.15	[ : 0.13	! : 0.10	c : 0.10	" : 0.10	d : 0.10	g : 0.06	# : 0.05	= : 0.05	b : 0.03	h : 0.03	% : 0.01	a : 0.01	+ : 0.01	G : 0.01	
c : 0.23	e : 0.16	d : 0.16	b : 0.08	g : 0.06	# : 0.06	" : 0.05	h : 0.05	= : 0.05	! : 0.03	G : 0.01	
c : 0.22	e : 0.13	d : 0.13	g : 0.08	# : 0.08	b : 0.08	[ : 0.08	" : 0.05	h : 0.05	= : 0.05	a : 0.01	
c : 0.22	g : 0.10	e : 0.10	d : 0.10	[ : 0.10	# : 0.08	" : 0.06	b : 0.05	h : 0.05	! : 0.05	= : 0.03	a : 0.01	i : 0.01	
[ : 0.15	d : 0.11	c : 0.11	g : 0.10	e : 0.08	" : 0.08	! : 0.08	# : 0.06	b : 0.05	h : 0.05	= : 0.03	f : 0.01	a : 0.01	i : 0.01	
c : 0.22	g : 0.15	" : 0.08	! : 0.08	b : 0.06	e : 0.05	d : 0.05	f : 0.05	# : 0.05	h : 0.05	[ : 0.05	= : 0.05	a : 0.01	i : 0.01	
c : 0.23	g : 0.15	! : 0.08	d : 0.06	f : 0.06	" : 0.06	[ : 0.06	= : 0.06	b : 0.05	# : 0.03	h : 0.03	e : 0.03	i : 0.01	a : 0.01	
c : 0.22	g : 0.11	f : 0.11	d : 0.11	! : 0.10	= : 0.06	" : 0.05	# : 0.03	a : 0.03	h : 0.03	[ : 0.03	b : 0.03	i : 0.01	e : 0.01	
[ : 0.16	c : 0.16	! : 0.15	f : 0.11	g : 0.10	d : 0.08	= : 0.06	# : 0.03	a : 0.01	i : 0.01	b : 0.01	e : 0.01	" : 0.01	h : 0.01	
c : 0.25	f : 0.11	! : 0.10	[ : 0.10	d : 0.10	g : 0.08	= : 0.06	b : 0.06	# : 0.05	i : 0.01	e : 0.01	a : 0.01	
c : 0.30	b : 0.16	d : 0.10	f : 0.10	# : 0.06	g : 0.06	= : 0.06	" : 0.03	a : 0.03	! : 0.01	[ : 0.01	i : 0.01	
c : 0.25	! : 0.16	b : 0.11	" : 0.08	= : 0.06	[ : 0.06	f : 0.06	# : 0.05	g : 0.05	d : 0.03	a : 0.01	i : 0.01	
[ : 0.22	! : 0.22	" : 0.13	c : 0.10	b : 0.08	= : 0.06	# : 0.05	f : 0.05	a : 0.03	d : 0.03	
a : 0.16	d : 0.15	c : 0.15	b : 0.13	" : 0.10	! : 0.08	[ : 0.06	= : 0.06	# : 0.03	e : 0.03	
c : 0.38	[ : 0.18	d : 0.13	b : 0.08	! : 0.05	= : 0.05	" : 0.05	e : 0.03	a : 0.01	
c : 0.49	b : 0.20	d : 0.13	o : 0.03	= : 0.03	[ : 0.03	e : 0.03	! : 0.01	a : 0.01	
c : 0.37	b : 0.22	d : 0.13	o : 0.13	e : 0.03	m : 0.03	l : 0.01	= : 0.01	a : 0.01	n : 0.01	
m : 0.52	o : 0.18	c : 0.10	l : 0.06	n : 0.05	b : 0.03	e : 0.03	
m : 0.61	o : 0.18	l : 0.15	n : 0.05	
m : 0.61	o : 0.18	l : 0.13	n : 0.05	c : 0.01	
m : 0.57	o : 0.18	l : 0.08	c : 0.06	n : 0.05	d : 0.01	= : 0.01	
c : 0.33	b : 0.18	o : 0.15	d : 0.13	m : 0.08	= : 0.03	n : 0.03	a : 0.01	e : 0.01	
c : 0.44	b : 0.27	d : 0.13	o : 0.05	= : 0.03	e : 0.03	] : 0.01	a : 0.01	
c : 0.45	d : 0.13	b : 0.13	] : 0.11	2 : 0.03	= : 0.03	3 : 0.03	e : 0.03	4 : 0.01	
c : 0.18	3 : 0.15	] : 0.13	a : 0.13	d : 0.11	2 : 0.08	= : 0.05	b : 0.05	4 : 0.05	e : 0.03	
2 : 0.22	3 : 0.20	] : 0.15	c : 0.13	4 : 0.08	a : 0.06	= : 0.05	b : 0.03	e : 0.03	d : 0.01	
2 : 0.20	3 : 0.18	b : 0.15	c : 0.10	4 : 0.10	] : 0.08	f : 0.06	= : 0.05	d : 0.03	e : 0.01	
c : 0.18	b : 0.16	d : 0.11	f : 0.10	a : 0.10	4 : 0.08	2 : 0.06	= : 0.06	3 : 0.06	g : 0.01	] : 0.01	
] : 0.20	c : 0.16	d : 0.11	f : 0.10	4 : 0.08	g : 0.08	= : 0.06	b : 0.06	2 : 0.05	3 : 0.03	i : 0.01	
c : 0.27	f : 0.11	g : 0.10	d : 0.10	= : 0.06	] : 0.06	4 : 0.05	b : 0.05	a : 0.03	h : 0.03	2 : 0.03	e : 0.03	i : 0.01	3 : 0.01	
c : 0.22	g : 0.13	f : 0.11	d : 0.11	] : 0.06	4 : 0.05	3 : 0.05	= : 0.05	b : 0.05	h : 0.03	2 : 0.03	e : 0.03	i : 0.01	a : 0.01	
c : 0.23	] : 0.16	g : 0.13	f : 0.11	4 : 0.06	e : 0.05	= : 0.05	3 : 0.03	h : 0.03	d : 0.03	a : 0.01	i : 0.01	2 : 0.01	b : 0.01	
c : 0.23	g : 0.15	] : 0.11	e : 0.06	d : 0.06	2 : 0.06	4 : 0.05	3 : 0.05	h : 0.05	f : 0.05	= : 0.05	a : 0.01	i : 0.01	
c : 0.23	g : 0.15	d : 0.11	b : 0.10	e : 0.08	2 : 0.06	4 : 0.05	h : 0.05	= : 0.05	] : 0.03	3 : 0.01	i : 0.01	f : 0.01	
c : 0.18	g : 0.15	b : 0.15	d : 0.11	e : 0.06	2 : 0.06	h : 0.05	] : 0.05	= : 0.05	4 : 0.03	f : 0.03	3 : 0.01	i : 0.01	
] : 0.20	2 : 0.13	d : 0.11	b : 0.11	g : 0.10	e : 0.08	c : 0.06	h : 0.05	= : 0.05	4 : 0.01	3 : 0.01	f : 0.01	i : 0.01	
c : 0.23	e : 0.15	d : 0.10	g : 0.08	] : 0.08	b : 0.08	h : 0.06	2 : 0.06	a : 0.03	= : 0.03	3 : 0.01	f : 0.01	i : 0.01	
c : 0.35	e : 0.15	] : 0.13	d : 0.06	2 : 0.05	g : 0.05	3 : 0.03	f : 0.03	h : 0.03	= : 0.03	b : 0.01	a : 0.01	4 : 0.01	
c : 0.38	e : 0.15	d : 0.08	2 : 0.05	g : 0.05	] : 0.05	= : 0.05	f : 0.03	h : 0.03	: : 0.01	5 : 0.01	b : 0.01	C : 0.01	4 : 0.01	3 : 0.01	

#score	818.9626428925986
#seq	59
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_transcript_m1_run2.txt

#BEAR
ccbb!!dddd"""eeeeeooooooeeeee]dddd]bb]	chr1:226107690-226108039(-)$1	349	74	112	13.4591
eeeggggggg####ddddoooooodddd333ggggggg	chr15:64980331-64980574(-)$1	243	182	220	15.8646
dddd####iiiiiiiiiooooooiiiiiiiiidddd33	chr11:34167946-34168284(+)$1	338	159	197	16.9829
ggggggg"""a[ggggggglllggggggg]a]gggggg	chr10:82032451-82032720(-)$1	269	206	244	12.7806
gggbb!!bb[bb"""cccooooooccc]bbbb22bb]g	chr16:9198037-9198326(+)$1	289	150	188	13.8901
e[a"""iiiiiiiii[dddd"""ffffff[iiiiiiii	chr17:79780599-79780902(-)$1	303	148	186	11.6990
eee:::============oooooo============bb	chr19:48885861-48886109(-)$1	248	122	160	16.4687
==========!!bbddddnnnnndddd]bb]=======	chr17:1641390-1641716(+)$1	326	85	123	12.5244
ddd[dddd[a[bb[a[bboooooobb]a]bba]dddd]	chr3:53851298-53851604(-)$1	306	244	282	13.5363
ff"""bb[==========oooooo==========]bb3	chr7:91742391-91742654(-)$1	263	4	42	18.9393
eee!!eeeee[ggggggg[ammmma]ggggggg22eee	chr17:46137313-46137616(+)$1	303	147	185	12.4046
fff####==========ppppppp==========ffff	chr20:3847222-3847548(+)$1	326	263	301	13.2893
dddd[dddd[ccceeeeeooooooeeeee]ccc333dd	chr1:28607543-28607827(+)$1	284	18	56	13.6914
ccc[bb[eeeeea!!cccooooooccc22a]eeeee]b	chr2:102794539-102794844(+)$1	305	139	177	14.0285
eeeee!!==========lll==========22eeeee:	chr1:230838710-230838933(-)$1	223	82	120	13.5248
cccc!!============oooooo============]c	chr11:1010838-1011091(+)$1	253	194	232	20.3769
ccc"""===========aooooooa]===========3	chr6:160526134-160526395(+)$1	261	76	114	20.9525
ccc[ggggggg####ddddmmmmdddd4444ggggggg	chr10:75009480-75009727(-)$1	247	135	173	11.7186
hhbb[ggggggg####bboooooobb4444gggggggb	chr6:159053381-159053638(+)$1	257	190	228	15.1913
d[a####ffffff[bb[aooooooa]bb]ffffff]a]	chr15:89173421-89173755(+)$1	334	187	225	15.1490
ddd"""bb[ggggggg[a[bboooooobbaggggggg2	chr14:53243258-53243549(-)$1	291	187	225	12.5986
eee!!bb===========mmmm===========]bb22	chr1:156712875-156713130(-)$1	255	169	207	15.1931
eeeee!!==========oooooo==========eeeee	chr5:138282421-138282762(-)$1	341	152	190	18.1488
ccc####bbccc[cccooooooccc]ccc]bb4444cc	chr6:149912024-149912317(+)$1	293	68	106	13.4584
eee[a[ccc"""iiiiiiiiillliiiiiiiii]ccc]	chr16:89762857-89763099(-)$1	242	99	137	14.8143
ggga!!ggggggg!!bb[annnnna]bb]ggggggg22	chr17:1657879-1658083(+)$1	204	11	49	13.4931
ee[gggggggccc[bb[aooooooa]bb]ccc]ggggg	chr6:109003034-109003352(+)$1	318	243	281	15.5910
dddd####bb[gggggggooooooggggggg]bb4444	chr7:5347307-5347596(-)$1	289	181	219	15.8713
ggggg:==============lll==============g	chr3:152881368-152881641(+)$1	273	173	211	16.1105
b[eeeee[bb[ccc[cccooooooccc]ccc22bb]ee	chr11:59342783-59343042(-)$1	259	201	239	13.6430
gggggggggggg!!ddddoooooodddd22ggggggg8	chr3:13358557-13358828(-)$1	271	74	112	14.7021
"ddddddddiiiiiiiiiooooooiiiiiiiii22ddd	chr18:77663226-77663482(-)$1	256	105	143	15.7357
ggg[ffffffbb[ccc[bboooooobb]ccc333bb22	chr1:237061627-237061859(+)$1	232	115	153	13.0765
dddd[eeeee####ddddooooooddddeeeee333dd	chr2:233741374-233741616(+)$1	242	86	124	13.7577
gggggccc"""affffffooooooffffff]a4444cc	chr1:12035121-12035398(+)$1	277	39	77	14.7676
eee"""ccc!!bb[eeeeeooooooeeeee]bb22ccc	chr9:127244575-127244916(-)$1	341	97	135	13.9637
=========!!eeeee[aooooooa]eeeee22=====	chr1:33789275-33789521(-)$1	246	144	182	16.3047
bb]ccc============oooooo============::	chr20:5171039-5171345(+)$1	306	189	227	16.8954
ddd:eeeee!!==========lll==========22ee	chr1:230838679-230838910(-)$1	231	55	93	13.8080
=========[bb[a!!bboooooobb22abb333====	chr19:41248262-41248520(-)$1	258	19	57	15.9796
c[aa!!==========bbssssssssssbb]=======	chr19:582964-583212(+)$1	248	99	137	12.4477
ccc!!ffffff[ddddbboooooobb]dddd]ffffff	chr1:109642987-109643196(+)$1	209	90	128	12.8754
eeee!!iiiiiiiiirrrrrrrrriiiiiiiiieeeee	chr1:179888152-179888471(+)$1	319	179	217	13.9681
"bb"""dddd[ccccccooooooccc333cccdddd33	chr11:66616169-66616461(-)$1	292	133	171	14.2979
ggg!!ccc[iiiiiiiiillliiiiiiiii]ccc]ggg	chr10:135175992-135176264(-)$1	272	127	165	14.7412
gggggg!!ffffff"""aooooooa333ffffff]ggg	chr11:64895142-64895418(-)$1	276	156	194	15.2086
eeee####iiiiiiiiimmmmiiiiiiiii333eeeee	chr12:121158117-121158399(+)$1	282	31	69	13.2710
cccffffff!!a[a[bboooooobb]a]a22ffffff]	chr11:1774104-1774338(-)$1	234	90	128	13.2102
iii"""eeeee!!ccc!!bboooooobbccceeeee33	chr16:31501848-31502111(-)$1	263	45	83	13.0125
ddd[a[ccc"""ffffffooooooffffff22ccca]d	chr9:129266953-129267211(+)$1	258	82	120	14.7720
%bb!!ccc####ffffffooooooffffff22ccc22b	chr20:44978885-44979152(-)$1	267	122	160	13.1916

#otherMatches

#Seq PSSM
CUCCUGUCCCAUGUUGGAAGUUGCUCUGAAGGGGUGGU	chr1:226107690-226108039(-)$1	349	74	112	13.4591
UACCUGGGCUUCUCUGUGUGCAUUUGCGUCUGGCCUGG	chr15:64980331-64980574(-)$1	243	182	220	15.8646
AGUACAUCGCUUUCUGGUGGUGCCCAGGAGGCUGCUGC	chr11:34167946-34168284(+)$1	338	159	197	16.9829
CUCAGAGACAUGCAGAGAUUGGGUUUUUGGACUUCUGG	chr10:82032451-82032720(-)$1	269	206	244	12.7806
aaccucaggugauccgcccaccuuggccucccaaagug	chr16:9198037-9198326(+)$1	289	150	188	13.8901
CUGCCUCCCAGGCUGCUGGGACUGGGCUGGUUUUGUCC	chr17:79780599-79780902(-)$1	303	148	186	11.6990
UUGGUCUUCUCCUGGUUUUUUGGCAAAUUAGGGGGGCC	chr19:48885861-48886109(-)$1	248	122	160	16.4687
GGGCUUGGGUCUGGGGUUUAAGUGGCCACCCAUCCAGG	chr17:1641390-1641716(+)$1	326	85	123	12.5244
GCUGAGGCAGUAAGUCACACAGUAGUUAGUUCAGCCUG	chr3:53851298-53851604(-)$1	306	244	282	13.5363
GCCAAAUAAGUUCAGGGUAUUCAAAUCUUGGACUAGUC	chr7:91742391-91742654(-)$1	263	4	42	18.9393
CUCUGGCCAGGAUUCCAGGCAGCAGGUUGGAGUGACUG	chr17:46137313-46137616(+)$1	303	147	185	12.4046
UCCAUUCUCUUCAGCUCCCUACAUGGGCUGGGGAGGAG	chr20:3847222-3847548(+)$1	326	263	301	13.2893
CUUCCUCCUUCCCCUGCCCACAGAGGCAGAGGGCACAG	chr1:28607543-28607827(+)$1	284	18	56	13.6914
CCAGCCUUCUCUCUCUGGUCAGGCCCACUGCAGAGAUG	chr2:102794539-102794844(+)$1	305	139	177	14.0285
UCUGCCCCUGGCCUUUGAGGCAAAGGCCAGCAGCAGAU	chr1:230838710-230838933(-)$1	223	82	120	13.5248
AGCCUUGGUGUGUGGCCGUCCUGGUGGCUGCACACCUG	chr11:1010838-1011091(+)$1	253	194	232	20.3769
CCUUUAACAGAAACUUUCAAAAGGGAAGAGUUUUUGUG	chr6:160526134-160526395(+)$1	261	76	114	20.9525
aagugcuaggauuacuggcgugagccaccacuccuagc	chr10:75009480-75009727(-)$1	247	135	173	11.7186
UUUGAUAAGUUGAAUAAGGAAAGGCUAAGAUAAUUUAC	chr6:159053381-159053638(+)$1	257	190	228	15.1913
GGCAGGGUGGGGCAGGAUGCAGUGAGCCAGCCCCAGGG	chr15:89173421-89173755(+)$1	334	187	225	15.1490
ggcaaagguugcagugagcugagaucacaccacugcac	chr14:53243258-53243549(-)$1	291	187	225	12.5986
AGCUAUUUUCCAGGCUUCUGCUGGGGCCUGGGACAACU	chr1:156712875-156713130(-)$1	255	169	207	15.1931
UGGGUGAUGGGCUCUGCUGACGUGCAGGGCUCAGCCCA	chr5:138282421-138282762(-)$1	341	152	190	18.1488
UAAGACUGCCUGAAAAUUGACCUUUACAGUGCCAAGUU	chr6:149912024-149912317(+)$1	293	68	106	13.4584
UCCCCUCCAUUCCCUGUGGGUGCAGCCCACAGGCUGGC	chr16:89762857-89763099(-)$1	242	99	137	14.8143
UUCCAACCGGCUUUGUGGCACUGGGGCAGGGGCCGGGG	chr17:1657879-1658083(+)$1	204	11	49	13.4931
ACAUGCAAAGUGACUAACAAAAUAGCUACUUACCUUUG	chr6:109003034-109003352(+)$1	318	243	281	15.5910
CUGCUGCUGCGUGGGGGCCCGGGUGCCCCCAGGUCCAU	chr7:5347307-5347596(-)$1	289	181	219	15.8713
AGGAGCAGGAGGAGAGGAAGAAACUUUUUUUCCUUCUU	chr3:152881368-152881641(+)$1	273	173	211	16.1105
GAGCAGGAUCAUGUCUGGCAGUUACUAAACAGGGACUU	chr11:59342783-59343042(-)$1	259	201	239	13.6430
AGGGGGUUUUUGGUGGGGUUUUUCCCCCUGUGAAAACU	chr3:13358557-13358828(-)$1	271	74	112	14.7021
UUGGAGUGGCUGCGAGGCCUGAACGCCUUGUGGAUCCG	chr18:77663226-77663482(-)$1	256	105	143	15.7357
aggcuggagugcaggggcgcaaucucggcucauagcaa	chr1:237061627-237061859(+)$1	232	115	153	13.0765
GGCCAGCGGUCUUAGCCCGUCCGGGGGCACCGUCACGG	chr2:233741374-233741616(+)$1	242	86	124	13.7577
GCCCCCUUCCCCCACCUCUUCCAUGGGGUGAGACUUGA	chr1:12035121-12035398(+)$1	277	39	77	14.7676
GCACUUGCCUGCUGCUUGGAGUGCCCCAAGGAGGUGGC	chr9:127244575-127244916(-)$1	341	97	135	13.9637
CCUGCCUCUGACCUGCCGUGUCCUUUGCAGGAAGGAGG	chr1:33789275-33789521(-)$1	246	144	182	16.3047
GGCUCAGUCAGACACAGACAUUCAUCUGUGUCUGACCA	chr20:5171039-5171345(+)$1	306	189	227	16.8954
GGCCUCUGCCCCUGGCCUUUGAGGCAAAGGCCAGCAGC	chr1:230838679-230838910(-)$1	231	55	93	13.8080
AGCUGUGGGACUACGACCAGGUCCGGGAGAGCAACCUG	chr19:41248262-41248520(-)$1	258	19	57	15.9796
GUCCUUGCCCUUUGUGGAAAGUCACAGGUCACACGAGG	chr19:582964-583212(+)$1	248	99	137	12.4477
GCUGUGCAGCGAGGCCCCUUAGGCGGCGGCCACGCUGU	chr1:109642987-109643196(+)$1	209	90	128	12.8754
gagguugcaguaagccgagaccaugcuuauugcccucc	chr1:179888152-179888471(+)$1	319	179	217	13.9681
ACAGAAGCUGUGCUGCCACGGCAGGCCCAGGCCAGCCA	chr11:66616169-66616461(-)$1	292	133	171	14.2979
GCUGGUCCCUCUGGGCAUGCUGUGCUCGGACGGAAAGC	chr10:135175992-135176264(-)$1	272	127	165	14.7412
GGGGUGCAGGCGGGCAGCACUGAGGGACCCUGCCCCGC	chr11:64895142-64895418(-)$1	276	156	194	15.2086
UCUUGACGACCAGGCAUAGCUGUGCCUGGUGAGAAGGC	chr12:121158117-121158399(+)$1	282	31	69	13.2710
UCCCGGGCCCGUUGAGGAUGAGGCCGCUAGAGGCCUGA	chr11:1774104-1774338(-)$1	234	90	128	13.2102
UUCCUUAGGGCAACUGCAGCGGGUGGGCCAGGCCCUCA	chr16:31501848-31502111(-)$1	263	45	83	13.0125
UUCUGUGGAUAAGGGAAGCGGCCACUUCUCCCUCCCUG	chr9:129266953-129267211(+)$1	258	82	120	14.7720
AGCCAGGGCAAAUGGCUUAGAAGCAGGCCACUCCCCAG	chr20:44978885-44979152(-)$1	267	122	160	13.1916

#DB
((((..((((...(((((......))))).)))).)).	chr1:226107690-226108039(-)$1	1	74	112	13.4591
((((((((((....((((......))))...)))))))	chr15:64980331-64980574(-)$1	1	182	220	15.8646
((((....(((((((((......)))))))))))))..	chr11:34167946-34168284(+)$1	1	159	197	16.9829
(((((((...(.(((((((...))))))).).))))))	chr10:82032451-82032720(-)$1	1	206	244	12.7806
(((((..((.((...(((......))).))))..)).)	chr16:9198037-9198326(+)$1	1	150	188	13.8901
(.(...(((((((((.((((...((((((.((((((((	chr17:79780599-79780902(-)$1	1	148	186	11.6990
)))...((((((((((((......))))))))))))((	chr19:48885861-48886109(-)$1	1	122	160	16.4687
((((((((((..((((((.....)))).)).)))))))	chr17:1641390-1641716(+)$1	1	85	123	12.5244
(((.((((.(.((.(.((......)).).))).)))).	chr3:53851298-53851604(-)$1	1	244	282	13.5363
((...((.((((((((((......)))))))))).)).	chr7:91742391-91742654(-)$1	1	4	42	18.9393
(((..(((((.(((((((.(....).)))))))..)))	chr17:46137313-46137616(+)$1	1	147	185	12.4046
(((....((((((((((.......))))))))))))))	chr20:3847222-3847548(+)$1	1	263	301	13.2893
((((.((((.((((((((......))))).)))...))	chr1:28607543-28607827(+)$1	1	18	56	13.6914
(((.((.((((((..(((......)))..).))))).)	chr2:102794539-102794844(+)$1	1	139	177	14.0285
(((((..((((((((((...))))))))))..))))).	chr1:230838710-230838933(-)$1	1	82	120	13.5248
((((..((((((((((((......)))))))))))).)	chr11:1010838-1011091(+)$1	1	194	232	20.3769
(((...((((((((((((......).))))))))))).	chr6:160526134-160526395(+)$1	1	76	114	20.9525
(((.(((((((....((((....))))....)))))))	chr10:75009480-75009727(-)$1	1	135	173	11.7186
))((.(((((((....((......))....))))))))	chr6:159053381-159053638(+)$1	1	190	228	15.1913
(.(....((((((.((.(......).)).)))))).).	chr15:89173421-89173755(+)$1	1	187	225	15.1490
(((...((.(((((((.(.((......)))))))))).	chr14:53243258-53243549(-)$1	1	187	225	12.5986
(((..(((((((((((((....))))))))))).))..	chr1:156712875-156713130(-)$1	1	169	207	15.1931
(((((..((((((((((......)))))))))))))))	chr5:138282421-138282762(-)$1	1	152	190	18.1488
(((....(((((.(((......))).))).))....))	chr6:149912024-149912317(+)$1	1	68	106	13.4584
(((.(.(((...(((((((((...))))))))).))).	chr16:89762857-89763099(-)$1	1	99	137	14.8143
((((..(((((((..((.(.....).)).)))))))..	chr17:1657879-1658083(+)$1	1	11	49	13.4931
((.((((((((((.((.(......).)).))).)))))	chr6:109003034-109003352(+)$1	1	243	281	15.5910
((((....((.(((((((......))))))).))....	chr7:5347307-5347596(-)$1	1	181	219	15.8713
))))).((((((((((((((...))))))))))))))(	chr3:152881368-152881641(+)$1	1	173	211	16.1105
(.(((((.((.(((.(((......))).)))..)).))	chr11:59342783-59343042(-)$1	1	201	239	13.6430
((((((((((((..((((......))))..))))))).	chr3:13358557-13358828(-)$1	1	74	112	14.7021
.(((((((((((((((((......)))))))))..)))	chr18:77663226-77663482(-)$1	1	105	143	15.7357
(((.((((((((.(((.((......)).)))...))..	chr1:237061627-237061859(+)$1	1	115	153	13.0765
((((.(((((....((((......)))))))))...))	chr2:233741374-233741616(+)$1	1	86	124	13.7577
((((((((...(((((((......)))))).)....))	chr1:12035121-12035398(+)$1	1	39	77	14.7676
(((...(((..((.(((((......))))).))..)))	chr9:127244575-127244916(-)$1	1	97	135	13.9637
(((((((((..(((((.(......).)))))..)))))	chr1:33789275-33789521(-)$1	1	144	182	16.3047
)).)))((((((((((((......))))))))))))..	chr20:5171039-5171345(+)$1	1	189	227	16.8954
))).(((((..((((((((((...))))))))))..))	chr1:230838679-230838910(-)$1	1	55	93	13.8080
(((((((((.((.(..((......))..)))...))))	chr19:41248262-41248520(-)$1	1	19	57	15.9796
(.((..((((((((((((..........)).)))))))	chr19:582964-583212(+)$1	1	99	137	12.4477
(((..((((((.((((((......)).)))).))))))	chr1:109642987-109643196(+)$1	1	90	128	12.8754
((((..(((((((((.........))))))))))))))	chr1:179888152-179888471(+)$1	1	179	217	13.9681
.((...((((.((((((......)))...)))))))..	chr11:66616169-66616461(-)$1	1	133	171	14.2979
(((..(((.(((((((((...))))))))).))).)))	chr10:135175992-135176264(-)$1	1	127	165	14.7412
((((((..((((((...(......)...)))))).)))	chr11:64895142-64895418(-)$1	1	156	194	15.2086
((((....(((((((((....)))))))))...)))))	chr12:121158117-121158399(+)$1	1	31	69	13.2710
(((((((((..(.(.((......)).).)..)))))).	chr11:1774104-1774338(-)$1	1	90	128	13.2102
(((...(((((..(((..((......))))))))))..	chr16:31501848-31502111(-)$1	1	45	83	13.0125
(((.(.(((...((((((......))))))..)))).)	chr9:129266953-129267211(+)$1	1	82	120	14.7720
.((..(((....((((((......))))))..)))..)	chr20:44978885-44979152(-)$1	1	122	160	13.1916

#PSSM
e : 0.23	c : 0.17	d : 0.17	g : 0.17	= : 0.05	f : 0.03	b : 0.03	" : 0.03	h : 0.01	i : 0.01	% : 0.01	
e : 0.21	d : 0.17	g : 0.17	c : 0.15	[ : 0.07	= : 0.05	b : 0.05	f : 0.03	h : 0.01	i : 0.01	
e : 0.21	d : 0.17	g : 0.17	c : 0.13	b : 0.07	a : 0.05	= : 0.05	" : 0.01	f : 0.01	[ : 0.01	] : 0.01	i : 0.01	
g : 0.13	" : 0.13	[ : 0.11	d : 0.09	! : 0.09	e : 0.09	b : 0.05	= : 0.05	# : 0.05	: : 0.03	c : 0.03	a : 0.03	f : 0.01	
! : 0.19	g : 0.15	" : 0.13	# : 0.11	e : 0.07	= : 0.05	[ : 0.05	b : 0.03	d : 0.03	a : 0.03	f : 0.03	: : 0.01	c : 0.01	
! : 0.15	g : 0.13	# : 0.11	" : 0.11	e : 0.07	c : 0.07	= : 0.05	d : 0.05	b : 0.05	f : 0.05	: : 0.03	[ : 0.03	
= : 0.17	g : 0.13	# : 0.11	c : 0.11	d : 0.09	e : 0.09	! : 0.07	b : 0.05	f : 0.05	i : 0.03	[ : 0.01	
= : 0.25	g : 0.11	c : 0.11	d : 0.09	e : 0.09	f : 0.07	# : 0.05	b : 0.05	i : 0.03	[ : 0.03	" : 0.01	! : 0.01	
= : 0.27	g : 0.11	e : 0.09	f : 0.09	d : 0.07	i : 0.07	b : 0.07	[ : 0.05	c : 0.05	" : 0.03	# : 0.01	
= : 0.23	g : 0.13	i : 0.11	" : 0.07	e : 0.07	f : 0.07	! : 0.07	[ : 0.05	d : 0.03	b : 0.03	a : 0.01	c : 0.01	# : 0.01	
= : 0.21	i : 0.11	! : 0.09	[ : 0.09	g : 0.09	" : 0.07	# : 0.05	b : 0.05	c : 0.05	f : 0.05	e : 0.03	a : 0.01	
= : 0.23	i : 0.11	g : 0.11	b : 0.09	c : 0.09	# : 0.07	" : 0.05	[ : 0.03	! : 0.03	e : 0.03	f : 0.03	a : 0.03	
= : 0.23	i : 0.13	g : 0.09	f : 0.09	# : 0.07	c : 0.07	[ : 0.07	b : 0.05	" : 0.03	! : 0.03	a : 0.01	e : 0.01	d : 0.01	
= : 0.23	i : 0.13	c : 0.09	# : 0.07	g : 0.07	[ : 0.07	f : 0.07	e : 0.05	! : 0.05	a : 0.03	" : 0.01	b : 0.01	d : 0.01	
= : 0.23	i : 0.13	d : 0.09	e : 0.07	g : 0.07	c : 0.07	! : 0.05	f : 0.05	" : 0.03	# : 0.03	b : 0.03	[ : 0.03	a : 0.01	
= : 0.23	c : 0.13	d : 0.11	i : 0.09	e : 0.07	g : 0.07	b : 0.07	f : 0.05	[ : 0.03	# : 0.01	! : 0.01	r : 0.01	" : 0.01	
= : 0.21	b : 0.13	d : 0.11	i : 0.09	[ : 0.09	c : 0.07	e : 0.05	g : 0.05	f : 0.05	o : 0.01	r : 0.01	" : 0.01	! : 0.01	
= : 0.13	d : 0.11	b : 0.11	a : 0.11	o : 0.09	e : 0.05	g : 0.05	c : 0.05	i : 0.05	f : 0.05	p : 0.01	l : 0.01	[ : 0.01	r : 0.01	m : 0.01	! : 0.01	
o : 0.60	d : 0.03	[ : 0.03	l : 0.03	m : 0.03	= : 0.03	b : 0.03	g : 0.01	n : 0.01	p : 0.01	i : 0.01	a : 0.01	e : 0.01	s : 0.01	r : 0.01	
o : 0.64	l : 0.05	m : 0.05	n : 0.03	b : 0.03	= : 0.03	d : 0.01	a : 0.01	p : 0.01	i : 0.01	s : 0.01	r : 0.01	
o : 0.66	m : 0.07	l : 0.05	n : 0.03	= : 0.03	" : 0.01	p : 0.01	b : 0.01	i : 0.01	s : 0.01	r : 0.01	
o : 0.68	l : 0.07	m : 0.05	n : 0.03	i : 0.03	" : 0.01	p : 0.01	= : 0.01	s : 0.01	r : 0.01	
o : 0.66	l : 0.05	n : 0.03	m : 0.03	= : 0.03	i : 0.03	g : 0.01	" : 0.01	p : 0.01	c : 0.01	s : 0.01	r : 0.01	
o : 0.58	= : 0.07	i : 0.05	d : 0.03	c : 0.03	l : 0.03	g : 0.01	f : 0.01	m : 0.01	p : 0.01	n : 0.01	s : 0.01	r : 0.01	b : 0.01	
= : 0.19	a : 0.13	i : 0.11	d : 0.09	c : 0.09	b : 0.09	f : 0.07	o : 0.07	e : 0.03	g : 0.03	s : 0.01	
= : 0.19	] : 0.15	i : 0.11	d : 0.09	b : 0.09	c : 0.07	f : 0.07	e : 0.05	g : 0.03	o : 0.03	s : 0.01	3 : 0.01	
= : 0.21	i : 0.11	d : 0.09	b : 0.09	e : 0.07	c : 0.07	f : 0.07	g : 0.05	] : 0.03	3 : 0.03	4 : 0.01	o : 0.01	2 : 0.01	s : 0.01	a : 0.01	
= : 0.21	i : 0.11	] : 0.09	b : 0.09	e : 0.07	d : 0.07	f : 0.07	g : 0.05	2 : 0.03	4 : 0.03	3 : 0.03	a : 0.01	c : 0.01	s : 0.01	
= : 0.21	i : 0.11	e : 0.09	f : 0.09	b : 0.07	] : 0.07	c : 0.07	g : 0.05	3 : 0.03	2 : 0.03	4 : 0.03	a : 0.03	d : 0.01	
= : 0.21	i : 0.11	b : 0.09	f : 0.09	c : 0.09	] : 0.07	g : 0.05	e : 0.05	a : 0.03	4 : 0.03	2 : 0.03	3 : 0.01	[ : 0.01	d : 0.01	
= : 0.19	] : 0.11	g : 0.11	c : 0.11	i : 0.09	b : 0.07	2 : 0.07	d : 0.03	3 : 0.03	f : 0.03	e : 0.03	a : 0.01	4 : 0.01	
= : 0.23	g : 0.13	i : 0.09	2 : 0.09	c : 0.07	] : 0.05	b : 0.05	e : 0.05	f : 0.05	3 : 0.05	a : 0.03	d : 0.01	
= : 0.23	g : 0.15	i : 0.07	c : 0.07	e : 0.07	f : 0.07	d : 0.05	2 : 0.05	3 : 0.05	] : 0.03	4 : 0.03	b : 0.03	
= : 0.21	g : 0.15	e : 0.11	d : 0.07	2 : 0.07	3 : 0.07	f : 0.07	c : 0.05	] : 0.03	4 : 0.03	b : 0.03	i : 0.01	
= : 0.17	g : 0.15	e : 0.11	] : 0.07	b : 0.07	2 : 0.07	f : 0.07	d : 0.05	4 : 0.05	c : 0.05	3 : 0.03	i : 0.01	
g : 0.19	= : 0.17	e : 0.13	b : 0.09	d : 0.07	f : 0.05	4 : 0.05	3 : 0.03	] : 0.03	c : 0.03	2 : 0.03	i : 0.01	a : 0.01	
g : 0.17	e : 0.13	= : 0.11	] : 0.07	d : 0.07	2 : 0.07	c : 0.07	b : 0.05	3 : 0.05	f : 0.05	i : 0.01	a : 0.01	4 : 0.01	: : 0.01	
g : 0.15	e : 0.11	] : 0.09	3 : 0.09	b : 0.07	= : 0.07	d : 0.07	c : 0.07	2 : 0.07	f : 0.03	: : 0.03	i : 0.01	4 : 0.01	8 : 0.01	

#score	745.3836849791849
#seq	51
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_UTR_m2_run2.txt

#BEAR
d!!bbccc####eeeeeooooooeeeee333ccc333bb2	chr5:139039028-139039274(+)$1	246	72	112	16.7813
bbccc!!dddd[bb!!aooooooa22bb]dddd333ccc]	chr3:50340715-50340987(-)$1	272	83	123	12.8060
d!!ddddeeeee!!bb[annnnna]bb22eeeee22dddd	chr15:75747837-75748134(-)$1	297	200	240	12.8346
$$$$eeeeedddd!!cccnnnnncccdddd]eeeee333e	chr17:38334139-38334376(+)$1	237	129	169	13.0250
c####eeeee"""eeeeennnnneeeee22eeeee]ccc3	chr20:62368532-62368781(+)$1	249	175	215	18.2806
eeee"""eeeee!!ddddllldddd4444eeeee333eee	chr19:5894625-5894856(-)$1	231	164	204	12.4723
c!!dddd[dddd[eeeeemmmmeeeee]dddd]dddd333	chr7:111202226-111202536(-)$1	310	202	242	14.0390
h####ccc"""gggggggnnnnnggggggg333ccc4444	chr19:1473587-1473825(-)$1	238	128	168	14.4001
!!bb[dddddddd!!eeeeeooooooeeeee]dddd]ddd	chr17:39942645-39942911(-)$1	266	151	191	11.3628
b[ggggggg"""eeeeeooooooeeeee]ggggggg]bbc	chr1:200708675-200708945(+)$1	270	46	86	16.0490
ggggg[a!!ccc[eeeeemmmmeeeee22ccc>>>>>>>>	chr8:142432015-142432262(+)$1	247	66	106	12.9663
bb[ccc[dddd[eeeeeooooooeeeee]ddddccc]bbb	chr5:176433116-176433389(-)$1	273	26	66	16.4074
dddccca[ccc!!fffffflllffffff]ccc]a]ccc]d	chr3:195622227-195622533(-)$1	306	263	303	11.5986
ddeeeee[ccc[bbeeeeemmmmeeeee22bb]ccc]eee	chr8:102217044-102217354(-)$1	310	17	57	12.5192
eee"""dddd"""eeeeennnnneeeee333dddd22eee	chr14:23451335-23451616(-)$1	281	101	141	17.8131
dggggggg!!dddd[bb[annnnna]bb]dddd22ggggg	chr17:27276612-27276920(-)$1	308	216	256	11.7142
======[eeeee!!eeeeemmmmeeeee]eeeee4444==	chr17:27224493-27224777(-)$1	284	179	219	15.7665
!!bb[ddddeeeee[cccnnnnnccceeeee]dddd]bb2	chr12:56633327-56633582(-)$1	255	93	133	13.4057
ccc"""eeeee[a[ddddnnnnndddda]eeeee]ccc22	chr16:9056308-9056542(-)$1	234	66	106	15.2476
ddd!!bb[accc[bbeeeeellleeeee22bb]ccc]a]b	chr14:67708456-67708736(+)$1	280	134	174	13.0040
ccc[ccc[ccc!!eeeeennnnneeeee22ccc]cccccc	chr1:36789189-36789483(+)$1	294	137	177	18.3310
ccc[dddd[ddddeeeeemmmmeeeee]dddddddd]ccc	chr14:54421084-54421347(-)$1	263	0	40	13.7398
ccc[ccc[ccc"""eeeeemmmmeeeee]ccc]ccc]ccc	chr5:151151471-151151761(+)$1	290	113	153	15.6513
eee[dddd[bb[eeeeeooooooeeeee]bb]ddddeeee	chr11:703358-703647(-)$1	289	2	42	13.7649
g[ccc"""bb"""eeeeennnnneeeee333bb4444ccc	chr16:73081628-73081906(-)$1	278	78	118	18.1717
bb####eeeee!!eeeeennnnneeeee]eeeee]bb22c	chr12:132196024-132196324(+)$1	300	26	66	17.1374
b:ccc[a[dddd[eeeeennnnneeeee]dddd22a]ccc	chr19:34991589-34991899(+)$1	310	170	210	17.7952
[eeeee[eeeee!!ddddnnnnndddd]eeeee]eeeeee	chr8:12611466-12611771(-)$1	305	178	218	13.3040
dddd"""eeeee!!ddddnnnnndddd22eeeee333ddd	chr9:130704363-130704632(-)$1	269	180	220	15.1150
iiiiccc!!ccc[eeeeennnnneeeee]cccccc]iiii	chr3:48470698-48470950(-)$1	252	5	45	17.8683
ccccccc####ggggggglllggggggg333ccc22ccc2	chr7:924136-924390(+)$1	254	133	173	12.6266
bb[a[a[dddd!!eeeeeooooooeeeee333dddd]a]a	chr16:30960992-30961240(+)$1	248	38	78	16.9219
[hhhhhhhh####eeeeeooooooeeeeehhhhhhhhggg	chr16:1360054-1360335(+)$1	281	31	71	13.0556
iiiiiii[dddd[ccc[ccclllccc]ccc22ddddiiii	chr8:71314691-71314933(-)$1	242	113	153	11.3765
ccc[a[dddd[dddd!!allla22dddd]dddd333a]cc	chr19:2231956-2232235(+)$1	279	105	145	13.0395
[cccccc[dddd!!ddddnnnnndddd22ddddccc]ccc	chr4:38665847-38666085(-)$1	238	145	185	16.0028
gggggccceeeeeeeeeennnnneeeee]eeeee22ccc]	chr16:70696848-70697152(-)$1	304	28	68	17.3545
b[ccc"""ccc!!eeeeeooooooeeeee22ccc]cccbb	chr12:57824380-57824628(-)$1	248	123	163	16.3122
[ffffff[dddd[eeeeennnnneeeee]dddd]ffffff	chr5:176873691-176874001(-)$1	310	209	249	16.0737
bb[eeeee"""a[eeeeeooooooeeeeea]eeeee333b	chr7:150777526-150777794(-)$1	268	226	266	16.2000
ggggggg[bb!!eeeee[ammmma]eeeeebb]ggggggg	chr9:33817607-33817864(+)$1	257	80	120	12.8587
bb[eeeee"""a[ddddnnnnndddd]a333eeeee]bbf	chr2:231577502-231577816(+)$1	314	79	119	13.3173
bb[ccc####bbdddd[aooooooa]dddd]bb333cccb	chr17:46178146-46178464(-)$1	318	184	224	12.4759
bb[dddd[dddd[ccc[ccclllccc]cccdddd]dddd]	chr19:1258090-1258362(+)$1	272	32	72	11.0715
ccc[ccc[bb[eeeee[annnnna]eeeee]bbccc]ccc	chr3:140660653-140660937(+)$1	284	236	276	15.7709
a!!eeeee####eeeeeooooooeeeee22eeeee22a]a	chr13:28713103-28713375(+)$1	272	157	197	16.6143
cc####a!!ddddeeeeennnnneeeee]dddd22a333c	chr12:49453406-49453655(-)$1	249	139	179	18.6417

#otherMatches

#Seq PSSM
UGGGACUGCCAAGAGGGGCUGGGCCCUCAUCCAGAUUUCA	chr5:139039028-139039274(+)$1	246	72	112	16.7813
GCCCCAAGGUCAGCAGGGACGAGCGGGCAGACUGGCGGGU	chr3:50340715-50340987(-)$1	272	83	123	12.8060
CCCGCUCGCCAGUGUGUGUGUUUCCCAGCCUGGCCGGAGC	chr15:75747837-75748134(-)$1	297	200	240	12.8346
CGUUGCAGCGGCGUCAGAGCGUGUCUCGCCUGCUGCUCCC	chr17:38334139-38334376(+)$1	237	129	169	13.0250
CAGAAGGUGGGCACCUCUGGGAGGGAGGGACUGCCAGGCC	chr20:62368532-62368781(+)$1	249	175	215	18.2806
GUGUGUGUGUCAGUGUCCGGAGGGCUUGAUGACGGCGACA	chr19:5894625-5894856(-)$1	231	164	204	12.4723
UGCGUGAUCGCGAGCAUGUGUGCGUGCGCGUGUUUAUCUG	chr7:111202226-111202536(-)$1	310	202	242	14.0390
GCUCCCUGAAGUGGCUUUGACGUGGGGCCGUCCCAGCUCC	chr19:1473587-1473825(-)$1	238	128	168	14.4001
GGGCAGGUGAGGGCCGGUGCCAUCGAGCGCCACCCUGCAC	chr17:39942645-39942911(-)$1	266	151	191	11.3628
GGCGCCGCCACAUUCCUAUGCCCGGGAgcggcggcggcgg	chr1:200708675-200708945(+)$1	270	46	86	16.0490
UGUUUUGUUCCUUUUCUUUUUUAAGAGUUGGGUUUUCUUU	chr8:142432015-142432262(+)$1	247	66	106	12.9663
CCGGACGCCGGGACCGGCCAUUACUGGUGCCGGGUUGGGC	chr5:176433116-176433389(-)$1	273	26	66	16.4074
CCCCAGGACGCAGGGCAGUGACGCUGCCGGUGCCGCUGCG	chr3:195622227-195622533(-)$1	306	263	303	11.5986
GCGUCUUGGUCCAGGGUCCGUGAGGACUGGCUAGAUGGGG	chr8:102217044-102217354(-)$1	310	17	57	12.5192
GCCAGGCGGGGAGGGGGCGAGAGGCCCCAGGCCCGAGGGC	chr14:23451335-23451616(-)$1	281	101	141	17.8131
CGGCCGGGAUCUCCUCGGGGUGGGUGCGUGGAGCCCUCGG	chr17:27276612-27276920(-)$1	308	216	256	11.7142
GGCGCCAUGGGCAAUUGCCACACGGUGGGGCCCAACGAGG	chr17:27224493-27224777(-)$1	284	179	219	15.7665
AACCUCCUCCAGGGUCUUGGAAGGAGUCCUGAGAGGUGGG	chr12:56633327-56633582(-)$1	255	93	133	13.4057
GGUUUCCGAAUCCACCUGUUUUUCGGGGAGUUUGUACUUG	chr16:9056308-9056542(-)$1	234	66	106	15.2476
CGAGGUCGCGACGCGCGGGACUCUCCCGGCCGGGUCUGGG	chr14:67708456-67708736(+)$1	280	134	174	13.0040
gggaggagggAGAGCCCGGCCCGCGGGCCGUCCGUCCCCC	chr1:36789189-36789483(+)$1	294	137	177	18.3310
GUAGGUAGGUAAAAUUCUUGAAGGAGUAUUUGCUGCGUGC	chr14:54421084-54421347(-)$1	263	0	40	13.7398
CUCAGCCGCGUAGGUACGCCGGGGUGUGGGCGGGGCAGGG	chr5:151151471-151151761(+)$1	290	113	153	15.6513
CCAUCCUGCGUCUCCAGCCCGACUUGGAAACACAGGUGGG	chr11:703358-703647(-)$1	289	2	42	13.7649
UGACCAGAGCCACCUCCGAGUCCUGGGGCCAGCGGGAGGU	chr16:73081628-73081906(-)$1	278	78	118	18.1717
GAUGUUGACUUGACUGCAAGGACUGCAGAGAGUUUUCUGG	chr12:132196024-132196324(+)$1	300	26	66	17.1374
CACGUGGUGUCUGUGGGAAUUGGUCCUGGGGACUUUGAUG	chr19:34991589-34991899(+)$1	310	170	210	17.7952
gcccggccccgggAGGCCCUGCAGGCCGCCGGGCUUGGGG	chr8:12611466-12611771(-)$1	305	178	218	13.3040
GGCUGGACUGGUCCGGAGCUGGCUUCCUUACCAGAAAAGC	chr9:130704363-130704632(-)$1	269	180	220	15.1150
UGCUUCCGGCCUggcccgggcggcgggcggggggAGGGCA	chr3:48470698-48470950(-)$1	252	5	45	17.8683
UGGUGCCUUCUGAAGAGGAGCCCUUUUCUGUGGUUAACUG	chr7:924136-924390(+)$1	254	133	173	12.6266
ACGGGGCCACCGGAGGACACGAAAGUCCUAAAGGUGUCGU	chr16:30960992-30961240(+)$1	248	38	78	16.9219
CGAGGCCGCGCCUUCCUCCUGCGCGGGGAGCGGCUUCCGG	chr16:1360054-1360335(+)$1	281	31	71	13.0556
AGGGGGCCGGGGUCGUCGCUGCCGGCUGCGCUCCCCGCCU	chr8:71314691-71314933(-)$1	242	113	153	11.3765
CAGGGUGGCUGUGGAGACUGGGGAUCUGGAGCCUGGUGCU	chr19:2231956-2232235(+)$1	279	105	145	13.0395
CGGCGGGCGCUCUCGCUGCGCUCCGGCUCGGGCCCCGGCU	chr4:38665847-38666085(-)$1	238	145	185	16.0028
UCUCCCAGGCCCCUCUCCCUCCAGGAGGCGGGGCGGCUGU	chr16:70696848-70697152(-)$1	304	28	68	17.3545
GAGGUGAGGCCACCUcccggccgagggggcgggcggcccg	chr12:57824380-57824628(-)$1	248	123	163	16.3122
GGCGCGUACACGGCGGGUGCUGAGCCCGGCGUGCGCGCGC	chr5:176873691-176874001(-)$1	310	209	249	16.0737
ggagacuuagagagacgaagccacuuguccaaggucacgc	chr7:150777526-150777794(-)$1	268	226	266	16.2000
GGUCCGGCCCGGCCGGUGCGUGAGGACUGGGGCCCGGGCc	chr9:33817607-33817864(+)$1	257	80	120	12.8587
CGGGCCGCAAGCGGGGCGAGGGGUUCGGGGAGCGGCGCGG	chr2:231577502-231577816(+)$1	314	79	119	13.3173
GGCUUGGAUAGGCGUGAGGAGGCGCAUACGACCGCACAAC	chr17:46178146-46178464(-)$1	318	184	224	12.4759
CUGAGUUUGGGGUAUUUAUAGACUAUUAAUUUUCUGACUG	chr19:1258090-1258362(+)$1	272	32	72	11.0715
AGAGAGAAUGAGCCAGAGGGACACGCUGGUGCAUCUGUUU	chr3:140660653-140660937(+)$1	284	236	276	15.7709
gAGGGCAGGCCUGGGCCGGAUGAGGCCCUGCUGCCGACGG	chr13:28713103-28713375(+)$1	272	157	197	16.6143
GCCCCCCUAAGCCCCCCCGUGCGGGGGGCGGCUGUGAUCG	chr12:49453406-49453655(-)$1	249	139	179	18.6417

#DB
(..(((((....(((((......)))))...)))...)).	chr5:139039028-139039274(+)$1	1	72	112	16.7813
(((((..((((.((..(......)..)).))))...))).	chr3:50340715-50340987(-)$1	1	83	123	12.8060
(..(((((((((..((.(.....).))..)))))..))))	chr15:75747837-75748134(-)$1	1	200	240	12.8346
....(((((((((..(((.....))))))).)))))...)	chr17:38334139-38334376(+)$1	1	129	169	13.0250
(....(((((...(((((.....)))))..))))).))).	chr20:62368532-62368781(+)$1	1	175	215	18.2806
((((...(((((..((((...))))....)))))...)))	chr19:5894625-5894856(-)$1	1	164	204	12.4723
(..((((.((((.(((((....))))).)))).))))...	chr7:111202226-111202536(-)$1	1	202	242	14.0390
(....(((...(((((((.....)))))))...)))....	chr19:1473587-1473825(-)$1	1	128	168	14.4001
..((.((((((((..(((((......))))).)))).)))	chr17:39942645-39942911(-)$1	1	151	191	11.3628
(.(((((((...(((((......))))).))))))).))(	chr1:200708675-200708945(+)$1	1	46	86	16.0490
(((((.(..(((.(((((....)))))..)))........	chr8:142432015-142432262(+)$1	1	66	106	12.9663
((.(((.((((.(((((......))))).))))))).)))	chr5:176433116-176433389(-)$1	1	26	66	16.4074
(((((((.(((..((((((...)))))).))).).))).)	chr3:195622227-195622533(-)$1	1	263	303	11.5986
(((((((.(((.(((((((....)))))..)).))).)))	chr8:102217044-102217354(-)$1	1	17	57	12.5192
(((...((((...(((((.....)))))...))))..)))	chr14:23451335-23451616(-)$1	1	101	141	17.8131
)(((((((..((((.((.(.....).)).))))..)))))	chr17:27276612-27276920(-)$1	1	216	256	11.7142
((((((.(((((..(((((....))))).)))))....))	chr17:27224493-27224777(-)$1	1	179	219	15.7665
..((.(((((((((.(((.....)))))))).)))).)).	chr12:56633327-56633582(-)$1	1	93	133	13.4057
(((...(((((.(.((((.....))))).))))).)))..	chr16:9056308-9056542(-)$1	1	66	106	15.2476
(((..((.((((.(((((((...)))))..)).))).).)	chr14:67708456-67708736(+)$1	1	134	174	13.0040
(((.(((.(((..(((((.....)))))..))).))))))	chr1:36789189-36789483(+)$1	1	137	177	18.3310
(((.((((.(((((((((....))))).)))))))).)))	chr14:54421084-54421347(-)$1	1	0	40	13.7398
(((.(((.(((...(((((....))))).))).))).)))	chr5:151151471-151151761(+)$1	1	113	153	15.6513
(((.((((.((.(((((......))))).)).))))))))	chr11:703358-703647(-)$1	1	2	42	13.7649
(.(((...((...(((((.....)))))...))....)))	chr16:73081628-73081906(-)$1	1	78	118	18.1717
((....(((((..(((((.....))))).))))).))..)	chr12:132196024-132196324(+)$1	1	26	66	17.1374
).(((.(.((((.(((((.....))))).))))..).)))	chr19:34991589-34991899(+)$1	1	170	210	17.7952
.(((((.(((((..((((.....)))).))))).))))))	chr8:12611466-12611771(-)$1	1	178	218	13.3040
((((...(((((..((((.....))))..)))))...)))	chr9:130704363-130704632(-)$1	1	180	220	15.1150
(((((((..(((.(((((.....))))).)))))).))))	chr3:48470698-48470950(-)$1	1	5	45	17.8683
(((((((....(((((((...)))))))...)))..))).	chr7:924136-924390(+)$1	1	133	173	12.6266
((.(.(.((((..(((((......)))))...)))).).)	chr16:30960992-30961240(+)$1	1	38	78	16.9219
.((((((((....(((((......))))))))))))))))	chr16:1360054-1360335(+)$1	1	31	71	13.0556
(((((((.((((.(((.(((...))).)))..))))))))	chr8:71314691-71314933(-)$1	1	113	153	11.3765
(((.(.((((.((((..(...)..)))).))))...).))	chr19:2231956-2232235(+)$1	1	105	145	13.0395
.((((((.((((..((((.....))))..))))))).)))	chr4:38665847-38666085(-)$1	1	145	185	16.0028
((((((((((((((((((.....))))).)))))..))).	chr16:70696848-70697152(-)$1	1	28	68	17.3545
(.(((...(((..(((((......)))))..))).)))))	chr12:57824380-57824628(-)$1	1	123	163	16.3122
.((((((.((((.(((((.....))))).)))).))))))	chr5:176873691-176874001(-)$1	1	209	249	16.0737
((.(((((...(.(((((......)))))).)))))...)	chr7:150777526-150777794(-)$1	1	226	266	16.2000
(((((((.((..(((((.(....).))))))).)))))))	chr9:33817607-33817864(+)$1	1	80	120	12.8587
((.(((((...(.((((.....)))).)...))))).)))	chr2:231577502-231577816(+)$1	1	79	119	13.3173
((.(((....((((((.(......).)))).))...))))	chr17:46178146-46178464(-)$1	1	184	224	12.4759
((.((((.((((.(((.(((...))).))))))).)))).	chr19:1258090-1258362(+)$1	1	32	72	11.0715
(((.(((.((.(((((.(.....).))))).))))).)))	chr3:140660653-140660937(+)$1	1	236	276	15.7709
(..(((((....(((((......)))))..)))))..).)	chr13:28713103-28713375(+)$1	1	157	197	16.6143
((....(..(((((((((.....))))).))))..)...)	chr12:49453406-49453655(-)$1	1	139	179	18.6417

#PSSM
b : 0.23	c : 0.21	d : 0.14	g : 0.08	[ : 0.08	e : 0.06	! : 0.04	i : 0.04	$ : 0.02	h : 0.02	= : 0.02	a : 0.02	
c : 0.19	b : 0.17	! : 0.12	e : 0.08	g : 0.08	d : 0.08	[ : 0.06	# : 0.04	i : 0.04	$ : 0.02	= : 0.02	: : 0.02	h : 0.02	f : 0.02	
c : 0.25	[ : 0.12	e : 0.10	g : 0.10	! : 0.08	# : 0.08	d : 0.06	b : 0.04	i : 0.04	$ : 0.02	= : 0.02	h : 0.02	f : 0.02	
c : 0.19	e : 0.12	[ : 0.12	g : 0.10	d : 0.08	# : 0.08	b : 0.06	" : 0.04	i : 0.04	$ : 0.02	= : 0.02	! : 0.02	a : 0.02	h : 0.02	f : 0.02	
c : 0.27	e : 0.12	d : 0.10	g : 0.10	# : 0.08	" : 0.08	[ : 0.06	b : 0.02	= : 0.02	! : 0.02	h : 0.02	i : 0.02	a : 0.02	f : 0.02	
c : 0.25	d : 0.14	e : 0.14	" : 0.12	g : 0.06	[ : 0.06	# : 0.04	! : 0.02	= : 0.02	b : 0.02	a : 0.02	h : 0.02	i : 0.02	f : 0.02	
c : 0.19	d : 0.19	e : 0.17	" : 0.08	a : 0.08	[ : 0.08	g : 0.06	! : 0.02	b : 0.02	h : 0.02	i : 0.02	f : 0.02	# : 0.02	
[ : 0.27	e : 0.25	d : 0.19	c : 0.06	! : 0.06	g : 0.04	" : 0.04	# : 0.04	h : 0.02	
d : 0.27	e : 0.21	c : 0.10	# : 0.08	! : 0.08	" : 0.06	b : 0.06	[ : 0.04	g : 0.02	a : 0.02	h : 0.02	
d : 0.31	e : 0.21	c : 0.17	# : 0.10	" : 0.08	b : 0.08	! : 0.02	
d : 0.29	e : 0.19	c : 0.17	" : 0.14	# : 0.08	b : 0.04	[ : 0.04	! : 0.02	
d : 0.25	e : 0.17	! : 0.12	[ : 0.10	" : 0.10	# : 0.06	c : 0.06	g : 0.04	a : 0.04	b : 0.02	
! : 0.23	[ : 0.21	e : 0.19	d : 0.14	" : 0.08	b : 0.04	g : 0.04	a : 0.02	# : 0.02	
e : 0.53	! : 0.17	d : 0.08	b : 0.06	g : 0.04	c : 0.04	f : 0.02	[ : 0.02	" : 0.02	
e : 0.57	d : 0.17	! : 0.06	b : 0.04	g : 0.04	[ : 0.04	c : 0.04	f : 0.02	
e : 0.61	d : 0.14	c : 0.08	! : 0.04	b : 0.04	g : 0.04	f : 0.02	
e : 0.59	d : 0.12	[ : 0.10	c : 0.04	g : 0.04	a : 0.02	f : 0.02	b : 0.02	! : 0.02	
e : 0.46	o : 0.12	d : 0.10	a : 0.08	c : 0.08	g : 0.04	[ : 0.04	f : 0.02	n : 0.02	
n : 0.42	o : 0.23	e : 0.10	l : 0.06	m : 0.06	a : 0.04	c : 0.04	f : 0.02	
n : 0.44	o : 0.23	m : 0.14	l : 0.08	e : 0.04	c : 0.04	
n : 0.44	o : 0.25	l : 0.14	m : 0.14	
n : 0.44	o : 0.25	m : 0.14	l : 0.08	d : 0.02	g : 0.02	a : 0.02	
n : 0.42	o : 0.25	m : 0.08	e : 0.06	l : 0.06	d : 0.04	f : 0.02	g : 0.02	2 : 0.02	
e : 0.46	d : 0.12	o : 0.12	a : 0.08	c : 0.08	g : 0.04	f : 0.02	n : 0.02	2 : 0.02	
e : 0.55	d : 0.14	c : 0.08	] : 0.06	g : 0.04	a : 0.04	2 : 0.02	o : 0.02	f : 0.02	
e : 0.59	d : 0.12	c : 0.08	g : 0.04	] : 0.04	2 : 0.02	b : 0.02	4 : 0.02	o : 0.02	f : 0.02	
e : 0.63	d : 0.14	b : 0.06	] : 0.06	g : 0.04	4 : 0.02	f : 0.02	
e : 0.57	2 : 0.08	d : 0.06	] : 0.06	b : 0.04	g : 0.04	a : 0.04	c : 0.04	4 : 0.02	f : 0.02	
] : 0.34	2 : 0.19	e : 0.19	3 : 0.10	d : 0.08	c : 0.04	4 : 0.02	g : 0.02	
d : 0.25	e : 0.25	3 : 0.12	2 : 0.12	c : 0.12	g : 0.04	b : 0.02	h : 0.02	a : 0.02	
e : 0.25	d : 0.23	3 : 0.14	c : 0.10	] : 0.08	b : 0.08	2 : 0.04	g : 0.02	h : 0.02	
e : 0.27	d : 0.25	c : 0.17	b : 0.12	] : 0.06	3 : 0.04	g : 0.02	h : 0.02	2 : 0.02	
d : 0.34	e : 0.27	] : 0.12	c : 0.10	b : 0.06	3 : 0.02	g : 0.02	> : 0.02	h : 0.02	
e : 0.25	c : 0.23	d : 0.19	3 : 0.06	2 : 0.06	] : 0.06	g : 0.04	> : 0.02	a : 0.02	4 : 0.02	h : 0.02	
c : 0.19	d : 0.17	3 : 0.12	2 : 0.12	e : 0.12	] : 0.10	g : 0.04	4 : 0.04	> : 0.02	h : 0.02	f : 0.02	
c : 0.23	d : 0.17	3 : 0.12	2 : 0.10	e : 0.08	g : 0.06	] : 0.04	4 : 0.04	a : 0.04	> : 0.02	b : 0.02	h : 0.02	f : 0.02	
] : 0.27	c : 0.19	3 : 0.12	d : 0.06	4 : 0.06	2 : 0.04	g : 0.04	e : 0.04	i : 0.04	> : 0.02	b : 0.02	h : 0.02	a : 0.02	f : 0.02	
c : 0.31	b : 0.10	e : 0.10	d : 0.08	3 : 0.08	g : 0.06	a : 0.06	4 : 0.04	i : 0.04	> : 0.02	2 : 0.02	] : 0.02	f : 0.02	
c : 0.27	b : 0.12	e : 0.10	d : 0.08	3 : 0.08	] : 0.08	g : 0.06	2 : 0.04	i : 0.04	4 : 0.02	> : 0.02	= : 0.02	f : 0.02	
c : 0.23	e : 0.12	b : 0.10	2 : 0.08	d : 0.08	] : 0.06	g : 0.06	3 : 0.04	i : 0.04	a : 0.04	f : 0.04	4 : 0.02	> : 0.02	= : 0.02	

#score	693.0878488483232
#seq	47
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_CDS_m2_run1.txt

#BEAR
gggggggqqqqqqqqgggggg	chr2:145157097-145157406(-)$1	309	208	229	8.2172
[dddd[arrrrrrrrra]ddd	chr8:17814953-17815234(+)$1	281	205	226	10.0219
ddd!!bbpppppppbb]dddd	chr1:203766801-203767061(+)$1	260	237	258	11.4569
!!ddddarrrrrrrrra]ddd	chr8:124266895-124267183(-)$1	288	25	46	10.1725
=======ppppppp=======	chr1:155447776-155448047(-)$1	271	134	155	13.0994
eeee!!apppppppa22eeee	chr2:152321203-152321518(+)$1	315	241	262	11.0557
=="""cccooooooccc====	chr17:29161370-29161639(+)$1	269	202	223	6.3649
iiiiiiipppppppiiiiiii	chr3:42680266-42680503(+)$1	237	173	194	12.4297
""bb[bbrrrrrrrrrbb]bb	chr1:40703500-40703820(+)$1	320	178	199	9.1601
""ccc[aqqqqqqqqaccc33	chr3:160143809-160144057(+)$1	248	123	144	8.4151
gggggggpppppppggggggg	chr16:24802489-24802749(+)$1	260	190	211	12.1078
cffffffpppppppffffff]	chr1:214813752-214814014(+)$1	262	106	127	10.4643
b!!ddddpppppppdddd22b	chr11:65349316-65349628(+)$1	312	151	172	11.3747
eddddbbpppppppbb]dddd	chr11:5443360-5443645(-)$1	285	166	187	11.0479
gggggggpppppppggggggg	chr3:47164783-47165034(-)$1	251	62	83	12.1078
[ccc[bbpppppppbbcccdd	chr21:46918149-46918541(+)$1	392	21	42	11.6810
bbeeeeepppppppeeeee44	chr1:197072614-197072896(-)$1	282	59	80	10.5656
ee[ddddpppppppdddd]ee	chr2:55253744-55254018(-)$1	274	101	122	11.2781
ggggggaqqqqqqqqa]gggg	chr10:119043418-119043721(-)$1	303	89	110	8.5104
=======ppppppp=======	chr3:42679138-42679394(+)$1	256	212	233	13.0994
"""ddddpppppppdddd333	chr1:40702444-40702703(+)$1	259	191	212	11.9126
ffffcccpppppppccc]fff	chr12:46319944-46320217(-)$1	273	83	104	11.4706
a[eeeeepppppppeeeee]a	chr1:203767153-203767404(+)$1	251	123	144	11.0263
bb!!cccpppppppccc22bb	chr6:161469719-161470046(+)$1	327	49	70	11.6680
ddd!!bbpppppppbb]dddd	chr1:203766895-203767175(+)$1	280	143	164	11.4569
======apppppppa]=====	chr1:214813814-214814104(+)$1	290	187	208	13.0370
ggggg[aqqqqqqqqa]gggg	chr1:46073460-46073739(+)$1	279	110	131	8.5080
ddd[cccqqqqqqqqccc]dd	chr12:46320921-46321191(-)$1	270	230	251	8.0227
bb!!cccqqqqqqqqccc22b	chr17:29162617-29162880(+)$1	263	19	40	8.0742
=======qqqqqqqq======	chr8:53569095-53569403(-)$1	308	187	208	9.0522
[ffffffrrrrrrrrrfffff	chr3:42679728-42679994(+)$1	266	31	52	9.2517
b!!ddddpppppppdddd22b	chr11:65349429-65349694(+)$1	265	38	59	11.3747
ee[ddddpppppppdddd]ee	chr2:55253818-55254056(-)$1	238	139	160	11.2781
[bb[cccqqqqqqqqccc]bb	chr6:64421398-64421666(+)$1	268	76	97	7.7876
cc!!cccqqqqqqqqccc22c	chr2:55253460-55253726(-)$1	266	211	232	8.3925
b"""cccpppppppccc333b	chr10:70333083-70333369(+)$1	286	5	26	12.5595
!!cccrrrrrrrrrcccffff	chr1:111494799-111495117(-)$1	318	275	296	9.7360
ddd!!bbpppppppbbddddF	chr2:55253283-55253618(-)$1	335	287	308	11.0789
gggggggpppppppggggggg	chr7:91690501-91690774(+)$1	273	9	30	12.1078
gggggbbqqqqqqqqbb]ggg	chr1:214814853-214815099(+)$1	246	210	231	7.8631
=:eeeeerrrrrrrrreeeee	chr6:83877574-83877875(-)$1	301	119	140	8.6294
ddd!!bbpppppppbbddddG	chr2:55253239-55253483(-)$1	244	152	173	10.9529

#otherMatches

#Seq PSSM
AUGGUGCCACUAAAAGUAUUA	chr2:145157097-145157406(-)$1	309	208	229	8.2172
UCUAGUCACAGGAGCAGUCUG	chr8:17814953-17815234(+)$1	281	205	226	10.0219
CCAAGACCUCCAUUGUGUGGC	chr1:203766801-203767061(+)$1	260	237	258	11.4569
GACUCCCGAGGAAGUAGAGGA	chr8:124266895-124267183(-)$1	288	25	46	10.1725
CUCCAAGCUUAUCCCUUGGAG	chr1:155447776-155448047(-)$1	271	134	155	13.0994
AUGAUACUAUUAAUGAUUCAU	chr2:152321203-152321518(+)$1	315	241	262	11.0557
UUUACGUUACAAGAAACAAGU	chr17:29161370-29161639(+)$1	269	202	223	6.3649
UUUACUAAAGAUGAUAGUAAA	chr3:42680266-42680503(+)$1	237	173	194	12.4297
UCUCAGACCUUAAUUUUCAGA	chr1:40703500-40703820(+)$1	320	178	199	9.1601
CCCUGACAAAAAAAAGCAGAA	chr3:160143809-160144057(+)$1	248	123	144	8.4151
AUUCAUCAGGAUGGGAUGAAU	chr16:24802489-24802749(+)$1	260	190	211	12.1078
UCAGCUUACUGGGCAAGUUGA	chr1:214813752-214814014(+)$1	262	106	127	10.4643
CGACAGGGGUGAUGCCUGAGG	chr11:65349316-65349628(+)$1	312	151	172	11.3747
UGAGGAUGAAGUAGAUGCCUU	chr11:5443360-5443645(-)$1	285	166	187	11.0479
GAGAUACUCGGUAUGUAUCUU	chr3:47164783-47165034(-)$1	251	62	83	12.1078
AGAGAGCCAGGCUAGCCUCGG	chr21:46918149-46918541(+)$1	392	21	42	11.6810
UCAAUCUAUAAUAAAGAUUCA	chr1:197072614-197072896(-)$1	282	59	80	10.5656
AGUAGUAAUGAUGAUACUUCU	chr2:55253744-55254018(-)$1	274	101	122	11.2781
UUUGUGCUUAUGUUUGCCAUA	chr10:119043418-119043721(-)$1	303	89	110	8.5104
UCUAGGUCUCCAUCAUCUAGA	chr3:42679138-42679394(+)$1	256	212	233	13.0994
AUCAGUAAAUGAACUACUUAA	chr1:40702444-40702703(+)$1	259	191	212	11.9126
UUGUGGAACAGCAAUCCUAUA	chr12:46319944-46320217(-)$1	273	83	104	11.4706
UGGAAGCAAUGGAAGCUUUGA	chr1:203767153-203767404(+)$1	251	123	144	11.0263
UGAUCGUAAAAAAAAUGUACA	chr6:161469719-161470046(+)$1	327	49	70	11.6680
CCAAGACCUCCAUUGUGUGGC	chr1:203766895-203767175(+)$1	280	143	164	11.4569
UGGUGACAAAUGAAGAUCAUC	chr1:214813814-214814104(+)$1	290	187	208	13.0370
CUUGAACAACUGGUAGGUCAA	chr1:46073460-46073739(+)$1	279	110	131	8.5080
AGGCCGGAAAAAAUCCCGUUC	chr12:46320921-46321191(-)$1	270	230	251	8.0227
AAUAUCAAAAUAGAAUGAGUU	chr17:29162617-29162880(+)$1	263	19	40	8.0742
GCAAGUUAGAGGUUGAACUUG	chr8:53569095-53569403(-)$1	308	187	208	9.0522
AUUCAAAAAAAAGAACUUUGA	chr3:42679728-42679994(+)$1	266	31	52	9.2517
CGACAGGGGUGAUGCCUGAGG	chr11:65349429-65349694(+)$1	265	38	59	11.3747
AGUAGUAAUGAUGAUACUUCU	chr2:55253818-55254056(-)$1	238	139	160	11.2781
UAUACAGGGCUUGAACUGCAU	chr6:64421398-64421666(+)$1	268	76	97	7.7876
GAAACAAAAAUGGACUUGGUU	chr2:55253460-55253726(-)$1	266	211	232	8.3925
GCAGGCUCAAAACAAGCGACC	chr10:70333083-70333369(+)$1	286	5	26	12.5595
GAGGCCUCCCAAAUGCCAACC	chr1:111494799-111495117(-)$1	318	275	296	9.7360
GCUCAUCACCAUUAGAAGCUU	chr2:55253283-55253618(-)$1	335	287	308	11.0789
GGGAAUGAAACUAGUAUUUCC	chr7:91690501-91690774(+)$1	273	9	30	12.1078
UAAAGCAAGAAAUCAUGACUU	chr1:214814853-214815099(+)$1	246	210	231	7.8631
AUAGGACUCCCUGAGUGUCCU	chr6:83877574-83877875(-)$1	301	119	140	8.6294
GCUCAUCACCAUUAGAAGCUU	chr2:55253239-55253483(-)$1	244	152	173	10.9529

#DB
(((((((........))))))	chr2:145157097-145157406(-)$1	1	208	229	8.2172
.((((.(.........).)))	chr8:17814953-17815234(+)$1	1	205	226	10.0219
(((..((.......)).))))	chr1:203766801-203767061(+)$1	1	237	258	11.4569
..(((((.........).)))	chr8:124266895-124267183(-)$1	1	25	46	10.1725
(((((((.......)))))))	chr1:155447776-155448047(-)$1	1	134	155	13.0994
((((..(.......)..))))	chr2:152321203-152321518(+)$1	1	241	262	11.0557
((...(((......)))))))	chr17:29161370-29161639(+)$1	1	202	223	6.3649
(((((((.......)))))))	chr3:42680266-42680503(+)$1	1	173	194	12.4297
..((.((.........)).))	chr1:40703500-40703820(+)$1	1	178	199	9.1601
..(((.(........))))..	chr3:160143809-160144057(+)$1	1	123	144	8.4151
(((((((.......)))))))	chr16:24802489-24802749(+)$1	1	190	211	12.1078
(((((((.......)))))).	chr1:214813752-214814014(+)$1	1	106	127	10.4643
(..((((.......))))..)	chr11:65349316-65349628(+)$1	1	151	172	11.3747
)((((((.......)).))))	chr11:5443360-5443645(-)$1	1	166	187	11.0479
(((((((.......)))))))	chr3:47164783-47165034(-)$1	1	62	83	12.1078
.(((.((.......)))))))	chr21:46918149-46918541(+)$1	1	21	42	11.6810
(((((((.......)))))..	chr1:197072614-197072896(-)$1	1	59	80	10.5656
((.((((.......)))).))	chr2:55253744-55254018(-)$1	1	101	122	11.2781
(((((((........).))))	chr10:119043418-119043721(-)$1	1	89	110	8.5104
(((((((.......)))))))	chr3:42679138-42679394(+)$1	1	212	233	13.0994
...((((.......))))...	chr1:40702444-40702703(+)$1	1	191	212	11.9126
(((((((.......))).)))	chr12:46319944-46320217(-)$1	1	83	104	11.4706
(.(((((.......))))).)	chr1:203767153-203767404(+)$1	1	123	144	11.0263
((..(((.......)))..))	chr6:161469719-161470046(+)$1	1	49	70	11.6680
(((..((.......)).))))	chr1:203766895-203767175(+)$1	1	143	164	11.4569
(((((((.......).)))))	chr1:214813814-214814104(+)$1	1	187	208	13.0370
(((((.(........).))))	chr1:46073460-46073739(+)$1	1	110	131	8.5080
(((.(((........))).))	chr12:46320921-46321191(-)$1	1	230	251	8.0227
((..(((........)))..)	chr17:29162617-29162880(+)$1	1	19	40	8.0742
(((((((........))))))	chr8:53569095-53569403(-)$1	1	187	208	9.0522
.((((((.........)))))	chr3:42679728-42679994(+)$1	1	31	52	9.2517
(..((((.......))))..)	chr11:65349429-65349694(+)$1	1	38	59	11.3747
((.((((.......)))).))	chr2:55253818-55254056(-)$1	1	139	160	11.2781
.((.(((........))).))	chr6:64421398-64421666(+)$1	1	76	97	7.7876
((..(((........)))..)	chr2:55253460-55253726(-)$1	1	211	232	8.3925
(...(((.......)))...)	chr10:70333083-70333369(+)$1	1	5	26	12.5595
..(((.........)))))))	chr1:111494799-111495117(-)$1	1	275	296	9.7360
(((..((.......)))))))	chr2:55253283-55253618(-)$1	1	287	308	11.0789
(((((((.......)))))))	chr7:91690501-91690774(+)$1	1	9	30	12.1078
(((((((........)).)))	chr1:214814853-214815099(+)$1	1	210	231	7.8631
).(((((.........)))))	chr6:83877574-83877875(-)$1	1	119	140	8.6294
(((..((.......)))))))	chr2:55253239-55253483(-)$1	1	152	173	10.9529

#PSSM
g : 0.16	= : 0.14	b : 0.14	d : 0.11	[ : 0.09	e : 0.09	" : 0.07	! : 0.04	c : 0.04	i : 0.02	f : 0.02	a : 0.02	
g : 0.16	d : 0.16	= : 0.11	! : 0.09	" : 0.09	b : 0.09	e : 0.07	f : 0.07	c : 0.04	i : 0.02	[ : 0.02	: : 0.02	
d : 0.19	g : 0.16	! : 0.11	= : 0.09	e : 0.09	" : 0.07	c : 0.07	f : 0.07	b : 0.04	[ : 0.04	i : 0.02	
d : 0.19	g : 0.16	! : 0.16	= : 0.09	e : 0.09	c : 0.07	f : 0.07	" : 0.04	[ : 0.04	i : 0.02	b : 0.02	
c : 0.21	d : 0.19	g : 0.16	! : 0.11	= : 0.09	e : 0.07	[ : 0.04	f : 0.04	" : 0.02	i : 0.02	
b : 0.19	c : 0.19	d : 0.14	g : 0.11	= : 0.09	[ : 0.07	e : 0.07	f : 0.04	! : 0.02	i : 0.02	r : 0.02	
b : 0.19	c : 0.19	a : 0.16	d : 0.11	g : 0.09	= : 0.07	e : 0.07	f : 0.04	i : 0.02	r : 0.02	
p : 0.59	q : 0.23	r : 0.14	c : 0.02	
p : 0.59	q : 0.23	r : 0.14	o : 0.02	
p : 0.59	q : 0.23	r : 0.14	o : 0.02	
p : 0.59	q : 0.23	r : 0.14	o : 0.02	
p : 0.59	q : 0.23	r : 0.14	o : 0.02	
p : 0.59	q : 0.23	r : 0.14	o : 0.02	
p : 0.59	q : 0.23	r : 0.14	o : 0.02	
q : 0.23	b : 0.14	r : 0.11	c : 0.11	d : 0.11	g : 0.07	= : 0.04	a : 0.04	e : 0.04	i : 0.02	f : 0.02	
c : 0.21	b : 0.16	r : 0.11	d : 0.11	g : 0.09	= : 0.07	a : 0.07	e : 0.04	2 : 0.02	i : 0.02	f : 0.02	] : 0.02	
c : 0.26	d : 0.16	] : 0.11	g : 0.09	= : 0.09	e : 0.07	a : 0.04	b : 0.04	f : 0.04	2 : 0.02	i : 0.02	
d : 0.23	g : 0.14	c : 0.14	= : 0.11	] : 0.09	e : 0.09	f : 0.07	i : 0.02	b : 0.02	2 : 0.02	3 : 0.02	
g : 0.16	d : 0.16	= : 0.11	] : 0.11	2 : 0.11	e : 0.09	f : 0.09	c : 0.04	3 : 0.04	i : 0.02	
d : 0.21	g : 0.16	= : 0.11	e : 0.09	f : 0.09	2 : 0.09	b : 0.07	3 : 0.07	i : 0.02	4 : 0.02	] : 0.02	
g : 0.16	d : 0.16	b : 0.16	= : 0.11	e : 0.09	f : 0.07	3 : 0.04	i : 0.02	] : 0.02	4 : 0.02	a : 0.02	c : 0.02	F : 0.02	G : 0.02	

#score	437.87308993677607
#seq	42
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_transcript_m1_run1.txt

#BEAR
e!!dddd^^^^^^^^^^^^^^^^^^^^dddd3	chr1:1686998-1687356(-)$1	358	91	123	35.5360
ea^^^^^^^^^^^^^^^^^^^^^^^^^^^^a]	chr15:101846133-101846456(-)$1	323	98	130	41.1264
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:44036834-44037151(+)$1	317	27	59	42.7078
dd[ccc!!bb^^^^^^^^^^^^^^^^^^^^bb	chr15:67328035-67328351(-)$1	316	224	256	33.8359
======^^^^^^^^^^^^^^^^^^========	chr12:24029805-24030068(-)$1	263	187	219	31.9952
ff[ccc^^^^^^^^^^^^^^^^^^^^^^^^cc	chr16:89919224-89919461(+)$1	237	126	158	39.4205
eeeccc^^^^^^^^^^^^^^^^^^^ccc]eee	chr19:56091614-56091882(-)$1	268	103	135	33.5598
::dddd^^^^^^^^^^^^^^^^^^^^dddd::	chr1:21502790-21503040(-)$1	250	0	32	32.1413
[eeeee^^^^^^^^^^^^^^^^^^^^eeeeeh	chr17:4800905-4801158(+)$1	253	211	243	33.8634
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:3250333-3250661(-)$1	328	100	132	42.7078
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ee	chr19:46405372-46405656(-)$1	284	222	254	41.4866
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^ee	chr7:75567283-75567577(+)$1	294	167	199	38.0654
c!!ccc^^^^^^^^^^^^^^^^^^^^^^ccc3	chr1:17958986-17959270(+)$1	284	85	117	38.7664
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:180054133-180054393(+)$1	260	66	98	42.7078
d^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dd	chr16:30665998-30666278(+)$1	280	76	108	40.9000
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:50819418-50819671(-)$1	253	67	99	42.7078
d^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dd	chr20:47893927-47894202(-)$1	275	99	131	40.9000
g!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:65568305-65568611(-)$1	306	94	126	41.3369
&&&ccc^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:143129409-143129817(-)$1	408	267	299	40.3658
e!!ccc^^^^^^^^^^^^^^^^^^ccc22eee	chr12:49332508-49332789(-)$1	281	240	272	32.8726
::dddd^^^^^^^^^^^^^^^^^^^^dddd::	chr19:4830636-4830939(-)$1	303	68	100	32.1413
+eeeee^^^^^^^^^^^^^^^^^^^^^^^^ee	chr11:70543446-70543712(-)$1	266	72	104	38.6105
b!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22	chrM:13697-13939(+)$1	242	29	61	37.3115
[a^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:89450733-89451004(-)$1	271	82	114	42.1717
"""bb^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:7015236-7015514(-)$1	278	134	166	41.3402
gggggg^^^^^^^^^^^^^^^^^^^^^^^^gg	chr17:55733450-55733724(+)$1	274	191	223	38.5132
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:2298354-2298639(-)$1	285	56	88	42.7078
##dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr21:45645302-45645566(-)$1	264	87	119	40.9592
bb[eeeee^^^^^^^^^^^^^^^^^^^^^^ee	chr6:3403547-3403852(-)$1	305	75	107	35.9200
dd[dddd^^^^^^^^^^^^^^^^^^^^^dddd	chr22:29321797-29322094(+)$1	297	137	169	35.6194
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb	chr9:136779545-136779798(-)$1	253	38	70	41.2584
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:80900213-80900569(+)$1	356	201	233	42.7078
###ccc^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:42175563-42175887(+)$1	324	64	96	41.7511
c!!dddd^^^^^^^^^^^^^^^^^^^dddd22	chr19:19642863-19643125(+)$1	262	201	233	34.0422
d!!ccc^^^^^^^^^^^^^^^^^^^^^^ccc2	chr11:70716310-70716593(-)$1	283	131	163	38.4197
!!dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:102730181-102730445(+)$1	264	94	126	40.8612
""dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:81512987-81513251(+)$1	264	26	58	40.9376
ff[dddd^^^^^^^^^^^^^^^^^^^ddddff	chr20:25274170-25274438(+)$1	268	70	102	32.8914
'''dddd^^^^^^^^^^^^^^^^^^^^dddd2	chr4:186559677-186559944(-)$1	267	25	57	34.4987
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:242022474-242022813(-)$1	339	74	106	42.7078
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:29598694-29598975(+)$1	281	62	94	42.7078
gg[dddd^^^^^^^^^^^^^^^^^^^^ddddg	chr17:27436552-27436824(-)$1	272	225	257	34.6351
bb[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:289157-289464(+)$1	307	183	215	40.6462
:eeeee^^^^^^^^^^^^^^^^^^^^eeeee:	chr13:75928637-75928949(-)$1	312	126	158	33.0224
"""ccc^^^^^^^^^^^^^^^^^^^^^^^^^^	chr9:136757185-136757441(-)$1	256	89	121	41.7229
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:102450522-102450840(+)$1	318	66	98	42.7078
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:16817672-16817981(-)$1	309	144	176	42.7078
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ff	chr20:43039742-43040017(+)$1	275	198	230	41.2487
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr17:57917636-57917855(+)$1	219	111	143	40.0210
d!!ccc^^^^^^^^^^^^^^^^^^^ccc]ddd	chr20:32250163-32250475(-)$1	312	173	205	34.4859
cc[ccc^^^^^^^^^^^^^^^^^^^^^^^^cc	chr19:45323570-45323802(+)$1	232	189	221	39.7478
bb[ccc^^^^^^^^^^^^^^^^^^^cccbb::	chr2:99100474-99100751(+)$1	277	86	118	32.5292
b!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22	chrM:13645-13879(+)$1	234	81	113	37.3115
"""ccc^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:1062308-1062606(+)$1	298	127	159	41.7229
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:88525872-88526158(+)$1	286	39	71	42.7078
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:7417170-7417424(+)$1	254	141	173	42.7078
ggggggg^^^^^^^^^^^^^^^^^^^^^^ggg	chr20:61521312-61521582(-)$1	270	168	200	36.0400
d[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:57724945-57725200(-)$1	255	63	95	40.3055
""dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:47496573-47496825(-)$1	252	101	133	40.9376
E::ccc^^^^^^^^^^^^^^^^^^^^^ccc::	chr16:50582900-50583198(+)$1	298	249	281	33.2270
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr13:97935577-97935836(+)$1	259	211	243	42.7078
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^i	chr2:200322714-200323029(-)$1	315	184	216	42.0684
####bb^^^^^^^^^^^^^^^^^^^^bb4444	chr11:66620439-66620715(-)$1	276	22	54	37.0700
dddddd^^^^^^^^^^^^^^^^^^^dddd]dd	chr2:153267051-153267305(+)$1	254	219	251	32.6010
:eeeee^^^^^^^^^^^^^^^^^^^^^^^^ee	chr8:25130264-25130534(+)$1	270	55	87	38.0733
!a[ccc[a^^^^^^^^^^^^^^^^^^^^a]cc	chr3:30729512-30729756(+)$1	244	83	115	36.5509

#otherMatches

#Seq PSSM
CCCUGCUUUUCUCCCCAUCUCCCCAUUAGCAC	chr1:1686998-1687356(-)$1	358	91	123	35.5360
GCUCCCUUCCCCCCAUCCCCACUCCUCCCUGU	chr15:101846133-101846456(-)$1	323	98	130	41.1264
acauuccucccuccuucccaaccacacuccca	chr1:44036834-44037151(+)$1	317	27	59	42.7078
ugugcccaggauaacagccccacccccacccc	chr15:67328035-67328351(-)$1	316	224	256	33.8359
cucauuguucaauucccacuuaugagugagaa	chr12:24029805-24030068(-)$1	263	187	219	31.9952
GGCCCGUCUUCCAUCCUCCCUCUCACCCCCCG	chr16:89919224-89919461(+)$1	237	126	158	39.4205
cagcucccauccccaucagucccaagagucug	chr19:56091614-56091882(-)$1	268	103	135	33.5598
ccggcccccuccuccuccuccccccaggcucc	chr1:21502790-21503040(-)$1	250	0	32	32.1413
AGGGGGGACCCCGCCAGCCAAAACAUUCCCCC	chr17:4800905-4801158(+)$1	253	211	243	33.8634
uccguuucucccuuucucccucccuuccuccc	chr2:3250333-3250661(-)$1	328	100	132	42.7078
CCCCAUCCUCCCUCCAUUUCCUAUCCUCCCGU	chr19:46405372-46405656(-)$1	284	222	254	41.4866
GCUGCCUUCCUCCUUUCACGUCAUUGCAUCGG	chr7:75567283-75567577(+)$1	294	167	199	38.0654
UUUAGGCUUCCAAUAUUCCUCUCCCAUCCCUC	chr1:17958986-17959270(+)$1	284	85	117	38.7664
ccccuuuuuuucuccuuuucuuuccuccuucc	chr1:180054133-180054393(+)$1	260	66	98	42.7078
GACAUCUUCCUCACGCCCAACAAAACCCCACA	chr16:30665998-30666278(+)$1	280	76	108	40.9000
cccacuccuccccagaacucucccuccuccca	chr19:50819418-50819671(-)$1	253	67	99	42.7078
cuucgaucuccucugccccuaccccugucugu	chr20:47893927-47894202(-)$1	275	99	131	40.9000
GCCUCAUCCCCUCCCCCAUCAUGUUUCUCCAU	chr2:65568305-65568611(-)$1	306	94	126	41.3369
ccaucuaucccuccaucucuccuuccauccau	chr6:143129409-143129817(-)$1	408	267	299	40.3658
CCAAUCCCUAAUUGCUGUCCUGAUGAUGAGUC	chr12:49332508-49332789(-)$1	281	240	272	32.8726
cccugaucuccacccagccuccucccucagcu	chr19:4830636-4830939(-)$1	303	68	100	32.1413
ucugcuuccaaaacauuuugucaccccauuag	chr11:70543446-70543712(-)$1	266	72	104	38.6105
GCAGGAUUUCUCAUUACUAACAACAUUUCCCC	chrM:13697-13939(+)$1	242	29	61	37.3115
cgucccauccugucccauuuccaucucguccc	chr16:89450733-89451004(-)$1	271	82	114	42.1717
cucgcuuccccuccccucUCUCUCUCUCAucu	chr17:7015236-7015514(-)$1	278	134	166	41.3402
UCUGUUGAUAUCGUCCAAUUAUAGUGCAAAAA	chr17:55733450-55733724(+)$1	274	191	223	38.5132
uugccaccccugccccacugacugucaucccu	chr17:2298354-2298639(-)$1	285	56	88	42.7078
cccagcucaccccgcucuccccucuccccacu	chr21:45645302-45645566(-)$1	264	87	119	40.9592
GAUGCUGUGAUAGGGUAAGAUUAAUGGUUAAC	chr6:3403547-3403852(-)$1	305	75	107	35.9200
CCCGCUAACCAACCCCUACCCCAUCCCCUGGC	chr22:29321797-29322094(+)$1	297	137	169	35.6194
UCCCCUCCUCUCCCCCUCCUCUCUCUCUCUGG	chr9:136779545-136779798(-)$1	253	38	70	41.2584
uuccauccaacuacuuacccacccauuccccc	chr10:80900213-80900569(+)$1	356	201	233	42.7078
ugugggcCUUUCCUUCCUUccuccccuucccc	chr3:42175563-42175887(+)$1	324	64	96	41.7511
AUCGAAGUCCUUCAUGCUCCAUUCCCCUUUCU	chr19:19642863-19643125(+)$1	262	201	233	34.0422
AACCAGCCCCUUCCACUUUUUCUAUUUCCUGA	chr11:70716310-70716593(-)$1	283	131	163	38.4197
UCCAAGGUCAGAAGCCUCCCCCAUCACcacac	chr10:102730181-102730445(+)$1	264	94	126	40.8612
acguucacauuguugcacaaccaucaccccca	chr16:81512987-81513251(+)$1	264	26	58	40.9376
GCCUGUGCUCCCUUUCUGCGCCCUCACACAGC	chr20:25274170-25274438(+)$1	268	70	102	32.8914
CCAGGCCCCAGAAUCUUCUCAUCCACAGGCCC	chr4:186559677-186559944(-)$1	267	25	57	34.4987
caccucucaccacucuccacuucucccccaac	chr2:242022474-242022813(-)$1	339	74	106	42.7078
aaacucugucucaaaaaaauaaaaauaaaaua	chr17:29598694-29598975(+)$1	281	62	94	42.7078
CACAGCUCCCUUUCUUCCCACGUCCCUAGUUU	chr17:27436552-27436824(-)$1	272	225	257	34.6351
gccgccuacacccccgagacccccacccgccc	chr11:289157-289464(+)$1	307	183	215	40.6462
UACACGCCCACACCUCACUCCUUCUCUGUGUC	chr13:75928637-75928949(-)$1	312	126	158	33.0224
CCUUGCUGAuccccaccccuccccucaucucc	chr9:136757185-136757441(-)$1	256	89	121	41.7229
UUUUAAUUAAAUCAAUUUUcuccuuccuuccu	chr2:102450522-102450840(+)$1	318	66	98	42.7078
uccuuuuccauccccucccuccucAGCCCCCA	chr1:16817672-16817981(-)$1	309	144	176	42.7078
UUAAUAUUCAAUAGAAGUUACAUUAGGUCCCC	chr20:43039742-43040017(+)$1	275	198	230	41.2487
GCCCAACCCUUCCUCUCCCAUCCUCAAAAAAG	chr17:57917636-57917855(+)$1	219	111	143	40.0210
CCUGCUCCCCAUCCCCCGCCCUCACAGCCGGC	chr20:32250163-32250475(-)$1	312	173	205	34.4859
caucugcauccccaugcccaacccuaacccca	chr19:45323570-45323802(+)$1	232	189	221	39.7478
GGUGACUACCAUCCCCUCCACUCCUGUCCCUC	chr2:99100474-99100751(+)$1	277	86	118	32.5292
GCAGGAUUUCUCAUUACUAACAACAUUUCCCC	chrM:13645-13879(+)$1	234	81	113	37.3115
ACCGUGCUUCCUUCCCCUAUACCUCUGUCCCC	chr19:1062308-1062606(+)$1	298	127	159	41.7229
ACUAACCCUcucccccuccuacccuucuccuu	chr16:88525872-88526158(+)$1	286	39	71	42.7078
caccuacuagccccacuuacucgcccacuucc	chr17:7417170-7417424(+)$1	254	141	173	42.7078
AGGGUGUUCCCACCCACACCCCUCAUGCCGCA	chr20:61521312-61521582(-)$1	270	168	200	36.0400
ACCAGAUGAUAAUUCUUAUUCUUCUUCUUUUU	chr16:57724945-57725200(-)$1	255	63	95	40.3055
ccuccccuccccuccccuUUACCAGCACACCU	chr7:47496573-47496825(-)$1	252	101	133	40.9376
CUUCGCUGAACCCCCCUUUACUUACCCGCGUC	chr16:50582900-50583198(+)$1	298	249	281	33.2270
AGUAUAAUACCUUUAAGAAUUAAUCAAAACUA	chr13:97935577-97935836(+)$1	259	211	243	42.7078
CCAGAGACUUCCCCUACCCCCACCCCAAAUUA	chr2:200322714-200323029(-)$1	315	184	216	42.0684
cccugcccugcccuccccuccccuccgcucuc	chr11:66620439-66620715(-)$1	276	22	54	37.0700
UCUGGGUAAAAAAGUGAAUCCUAUCCCCAUGA	chr2:153267051-153267305(+)$1	254	219	251	32.6010
ccagaagucuuucaucuuuccaaacuaaaauu	chr8:25130264-25130534(+)$1	270	55	87	38.0733
cgugacccucucuaucuuguuguccacugugu	chr3:30729512-30729756(+)$1	244	83	115	36.5509

#DB
(..((((....................)))).	chr1:1686998-1687356(-)$1	1	91	123	35.5360
((............................).	chr15:101846133-101846456(-)$1	1	98	130	41.1264
................................	chr1:44036834-44037151(+)$1	1	27	59	42.7078
((.(((..((....................))	chr15:67328035-67328351(-)$1	1	224	256	33.8359
((((((..................))))))))	chr12:24029805-24030068(-)$1	1	187	219	31.9952
((.(((........................))	chr16:89919224-89919461(+)$1	1	126	158	39.4205
((((((...................))).)))	chr19:56091614-56091882(-)$1	1	103	135	33.5598
..((((....................))))..	chr1:21502790-21503040(-)$1	1	0	32	32.1413
.(((((....................))))))	chr17:4800905-4801158(+)$1	1	211	243	33.8634
................................	chr2:3250333-3250661(-)$1	1	100	132	42.7078
..............................))	chr19:46405372-46405656(-)$1	1	222	254	41.4866
..(((((.......................))	chr7:75567283-75567577(+)$1	1	167	199	38.0654
(..(((......................))).	chr1:17958986-17959270(+)$1	1	85	117	38.7664
................................	chr1:180054133-180054393(+)$1	1	66	98	42.7078
(.............................))	chr16:30665998-30666278(+)$1	1	76	108	40.9000
................................	chr19:50819418-50819671(-)$1	1	67	99	42.7078
(.............................))	chr20:47893927-47894202(-)$1	1	99	131	40.9000
(..(((..........................	chr2:65568305-65568611(-)$1	1	94	126	41.3369
...(((..........................	chr6:143129409-143129817(-)$1	1	267	299	40.3658
(..(((..................)))..)))	chr12:49332508-49332789(-)$1	1	240	272	32.8726
..((((....................))))..	chr19:4830636-4830939(-)$1	1	68	100	32.1413
.(((((........................))	chr11:70543446-70543712(-)$1	1	72	104	38.6105
(..(((.....................)))..	chrM:13697-13939(+)$1	1	29	61	37.3115
.(..............................	chr16:89450733-89451004(-)$1	1	82	114	42.1717
...((...........................	chr17:7015236-7015514(-)$1	1	134	166	41.3402
((((((........................))	chr17:55733450-55733724(+)$1	1	191	223	38.5132
................................	chr17:2298354-2298639(-)$1	1	56	88	42.7078
..((((..........................	chr21:45645302-45645566(-)$1	1	87	119	40.9592
((.(((((......................))	chr6:3403547-3403852(-)$1	1	75	107	35.9200
((.((((.....................))))	chr22:29321797-29322094(+)$1	1	137	169	35.6194
..............................))	chr9:136779545-136779798(-)$1	1	38	70	41.2584
................................	chr10:80900213-80900569(+)$1	1	201	233	42.7078
...(((..........................	chr3:42175563-42175887(+)$1	1	64	96	41.7511
(..((((...................))))..	chr19:19642863-19643125(+)$1	1	201	233	34.0422
(..(((......................))).	chr11:70716310-70716593(-)$1	1	131	163	38.4197
..((((..........................	chr10:102730181-102730445(+)$1	1	94	126	40.8612
..((((..........................	chr16:81512987-81513251(+)$1	1	26	58	40.9376
((.((((...................))))))	chr20:25274170-25274438(+)$1	1	70	102	32.8914
...((((....................)))).	chr4:186559677-186559944(-)$1	1	25	57	34.4987
................................	chr2:242022474-242022813(-)$1	1	74	106	42.7078
................................	chr17:29598694-29598975(+)$1	1	62	94	42.7078
((.((((....................)))))	chr17:27436552-27436824(-)$1	1	225	257	34.6351
((.(((..........................	chr11:289157-289464(+)$1	1	183	215	40.6462
.(((((....................))))).	chr13:75928637-75928949(-)$1	1	126	158	33.0224
...(((..........................	chr9:136757185-136757441(-)$1	1	89	121	41.7229
................................	chr2:102450522-102450840(+)$1	1	66	98	42.7078
................................	chr1:16817672-16817981(-)$1	1	144	176	42.7078
..............................))	chr20:43039742-43040017(+)$1	1	198	230	41.2487
((((...........................)	chr17:57917636-57917855(+)$1	1	111	143	40.0210
(..(((...................))).)))	chr20:32250163-32250475(-)$1	1	173	205	34.4859
((.(((........................))	chr19:45323570-45323802(+)$1	1	189	221	39.7478
((.(((...................)))))..	chr2:99100474-99100751(+)$1	1	86	118	32.5292
(..(((.....................)))..	chrM:13645-13879(+)$1	1	81	113	37.3115
...(((..........................	chr19:1062308-1062606(+)$1	1	127	159	41.7229
................................	chr16:88525872-88526158(+)$1	1	39	71	42.7078
................................	chr17:7417170-7417424(+)$1	1	141	173	42.7078
(((((((......................)))	chr20:61521312-61521582(-)$1	1	168	200	36.0400
(.((((..........................	chr16:57724945-57725200(-)$1	1	63	95	40.3055
..((((..........................	chr7:47496573-47496825(-)$1	1	101	133	40.9376
)..(((.....................)))..	chr16:50582900-50583198(+)$1	1	249	281	33.2270
................................	chr13:97935577-97935836(+)$1	1	211	243	42.7078
...............................)	chr2:200322714-200323029(-)$1	1	184	216	42.0684
....((....................))....	chr11:66620439-66620715(-)$1	1	22	54	37.0700
((((((...................)))).))	chr2:153267051-153267305(+)$1	1	219	251	32.6010
.(((((........................))	chr8:25130264-25130534(+)$1	1	55	87	38.0733
.(.(((.(....................).))	chr3:30729512-30729756(+)$1	1	83	115	36.5509

#PSSM
^ : 0.25	d : 0.13	b : 0.07	" : 0.07	e : 0.06	: : 0.06	g : 0.06	! : 0.04	c : 0.04	# : 0.04	f : 0.03	[ : 0.03	= : 0.01	& : 0.01	+ : 0.01	' : 0.01	E : 0.01	
^ : 0.28	! : 0.16	e : 0.07	" : 0.07	d : 0.06	a : 0.04	: : 0.04	g : 0.04	# : 0.04	b : 0.04	f : 0.03	= : 0.01	& : 0.01	' : 0.01	c : 0.01	[ : 0.01	
^ : 0.31	[ : 0.15	! : 0.13	d : 0.13	e : 0.09	" : 0.04	g : 0.03	# : 0.03	= : 0.01	& : 0.01	' : 0.01	: : 0.01	
^ : 0.31	c : 0.28	d : 0.22	e : 0.09	g : 0.03	= : 0.01	b : 0.01	# : 0.01	
^ : 0.33	c : 0.28	d : 0.21	e : 0.09	b : 0.03	g : 0.03	= : 0.01	
^ : 0.34	c : 0.28	d : 0.21	e : 0.09	g : 0.03	= : 0.01	b : 0.01	
^ : 0.83	d : 0.09	e : 0.03	! : 0.01	g : 0.01	[ : 0.01	
^ : 0.95	! : 0.01	e : 0.01	a : 0.01	
^ : 0.98	b : 0.01	
^ : 0.98	b : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.96	= : 0.01	c : 0.01	
^ : 0.90	c : 0.06	= : 0.01	d : 0.01	
^ : 0.80	d : 0.07	c : 0.06	e : 0.03	= : 0.01	b : 0.01	
^ : 0.71	d : 0.12	c : 0.09	e : 0.03	= : 0.01	2 : 0.01	b : 0.01	
^ : 0.65	d : 0.13	c : 0.07	] : 0.03	e : 0.03	= : 0.01	2 : 0.01	b : 0.01	4 : 0.01	a : 0.01	
^ : 0.63	d : 0.13	c : 0.07	e : 0.06	] : 0.03	= : 0.01	b : 0.01	g : 0.01	4 : 0.01	
^ : 0.42	e : 0.13	d : 0.12	c : 0.07	: : 0.06	2 : 0.04	b : 0.03	g : 0.03	f : 0.03	a : 0.01	= : 0.01	4 : 0.01	
^ : 0.39	e : 0.10	d : 0.09	: : 0.07	2 : 0.07	c : 0.04	g : 0.04	3 : 0.03	b : 0.03	f : 0.03	] : 0.01	= : 0.01	h : 0.01	i : 0.01	4 : 0.01	

#score	2552.590945695256
#seq	66
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_UTR_m3_run2.txt

#BEAR
dd!!ddddllldddd22dd	chr7:111928862-111929109(+)$1	247	179	198	10.3374
####ddddoooooodddd5	chr11:93464051-93464272(-)$1	221	23	42	10.2385
ddddddddammmma]dddd	chr17:27047485-27047735(+)$1	250	108	127	8.8615
hh!!ddddmmmmdddd444	chr18:47017933-47018192(-)$1	259	20	39	11.9345
:bb[ddddmmmmdddd]bb	chr11:75111331-75111633(+)$1	302	265	284	11.3268
!bb[ddddmmmmdddd]bb	chr17:8076687-8076921(-)$1	234	203	222	12.2914

#otherMatches

#Seq PSSM
AUGUGUAGCAUCUGCUAGU	chr7:111928862-111929109(+)$1	247	179	198	10.3374
UUUUAGAAUGCAGUUUCUC	chr11:93464051-93464272(-)$1	221	23	42	10.2385
UCCUGACACUUGUGAUGUC	chr17:27047485-27047735(+)$1	250	108	127	8.8615
ACUUCUGUGGAAGCAGUGC	chr18:47017933-47018192(-)$1	259	20	39	11.9345
GUUGGAACAAGGGUUUGGA	chr11:75111331-75111633(+)$1	302	265	284	11.3268
ACAUAGCUAUGAAGUUCUG	chr17:8076687-8076921(-)$1	234	203	222	12.2914

#DB
((..((((...))))..))	chr7:111928862-111929109(+)$1	1	179	198	10.3374
....((((......)))).	chr11:93464051-93464272(-)$1	1	23	42	10.2385
(((((((((....).))))	chr17:27047485-27047735(+)$1	1	108	127	8.8615
((..((((....))))...	chr18:47017933-47018192(-)$1	1	20	39	11.9345
.((.((((....)))).))	chr11:75111331-75111633(+)$1	1	265	284	11.3268
.((.((((....)))).))	chr17:8076687-8076921(-)$1	1	203	222	12.2914

#PSSM
d : 0.33	# : 0.16	h : 0.16	: : 0.16	! : 0.16	
d : 0.33	b : 0.33	# : 0.16	h : 0.16	
! : 0.33	b : 0.33	# : 0.16	d : 0.16	
! : 0.33	[ : 0.33	# : 0.16	d : 0.16	
d : 0.99	
d : 0.99	
d : 0.99	
d : 0.99	
m : 0.50	l : 0.16	o : 0.16	a : 0.16	
m : 0.66	l : 0.16	o : 0.16	
m : 0.66	l : 0.16	o : 0.16	
m : 0.66	d : 0.16	o : 0.16	
d : 0.66	o : 0.16	m : 0.16	
d : 0.66	o : 0.16	a : 0.16	
d : 0.83	] : 0.16	
d : 0.83	2 : 0.16	
d : 0.33	] : 0.33	2 : 0.16	4 : 0.16	
d : 0.50	b : 0.33	4 : 0.16	
d : 0.33	b : 0.33	5 : 0.16	4 : 0.16	

#score	64.99048009475001
#seq	6
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_UTR_m2_run1.txt

#BEAR
eeeee!!cccbb"""ccclllcccbb]ccc]eeeeedddd	chr5:73935748-73936004(-)$1	256	137	177	13.6819
::eeeeebb[a!!eeeeellleeeee]a]bb333eeeeee	chr7:104752716-104752963(-)$1	247	0	40	11.9566
[ccc####ccc[a[ddddllldddda]cccccc]bb]bb2	chr7:104752939-104753209(-)$1	270	82	122	16.0524
g####ffffff[ddddoooooodddd]ffffff22ggggg	chr3:187454313-187454561(-)$1	248	34	74	12.7803
""eeeee!!ccc"""cccmmmmcccccc22eeeee]====	chr14:39736596-39736844(+)$1	248	64	104	14.4099
b"""dddd[ccc!!ddddllldddd55555ccc]dddd]b	chr9:35690459-35690716(-)$1	257	133	173	14.9355
ddd####ddddccc[ddddllldddd22ccc]dddd4444	chr5:73935902-73936220(-)$1	318	98	138	15.0695
22dddd]cccccc]dddd4444dddd333iiiiiiiii22	chr17:75212397-75212668(+)$1	271	212	252	13.6223
####ccc!!cccccc[bbmmmmbb]ccc]ccc]ccc4444	chr17:29632109-29632459(+)$1	350	81	121	13.6803
dddddddd[ccc!!ddddoooooodddd666666ccc]dd	chr20:36146112-36146375(-)$1	263	65	105	12.8779

#otherMatches

#Seq PSSM
AGGAGCCGAGCUAAGGAUACAGUCAGCCUCUCUCCUCUGC	chr5:73935748-73936004(-)$1	256	137	177	13.6819
UUUGGUCCUGAUGUAAACACAGUUUGUUGAGAAAGACUAC	chr7:104752716-104752963(-)$1	247	0	40	11.9566
GUACAAGGUGCGGUCCUGGAGCAGGUGGUGGUGGAGGAGG	chr7:104752939-104753209(-)$1	270	82	122	16.0524
UAAGACGAGUUGGCUUGCAAAGGAGUGAACUUGAGAAGGA	chr3:187454313-187454561(-)$1	248	34	74	12.7803
GCUAUGGAGGAGCCCGGGGUUACCCCUCAACCGUAUUUGG	chr14:39736596-39736844(+)$1	248	64	104	14.4099
GAGAGGUCAGGCCGGUCCUGGGGGCAGCAAGCCCGGCCAC	chr9:35690459-35690716(-)$1	257	133	173	14.9355
CCCCACUGCCCCGGACCUGUUGCAGGCGCUGCGGGCUUCA	chr5:73935902-73936220(-)$1	318	98	138	15.0695
UUCUCUUUCUCUGUGUCUCAGAUGGCGAUUUUGCUGACAG	chr17:75212397-75212668(+)$1	271	212	252	13.6223
AAAGUAUAGACAAAUGACUUUGGUGGUUGUGUGGUAGAAG	chr17:29632109-29632459(+)$1	350	81	121	13.6803
GCUAGCUAUAUAUGGUAGGUGCCGCUACAGUUUUUAUUUA	chr20:36146112-36146375(-)$1	263	65	105	12.8779

#DB
(((((..(((((...(((...))))).))).)))))((((	chr5:73935748-73936004(-)$1	1	137	177	13.6819
..(((((((.(..(((((...))))).).))...)))))(	chr7:104752716-104752963(-)$1	1	0	40	11.9566
.(((....(((.(.((((...))))).)))))).)).)).	chr7:104752939-104753209(-)$1	1	82	122	16.0524
(....((((((.((((......)))).))))))..)))))	chr3:187454313-187454561(-)$1	1	34	74	12.7803
..(((((..(((...(((....))))))..))))).))))	chr14:39736596-39736844(+)$1	1	64	104	14.4099
(...((((.(((..((((...)))).....))).)))).)	chr9:35690459-35690716(-)$1	1	133	173	14.9355
(((....(((((((.((((...))))..))).))))....	chr5:73935902-73936220(-)$1	1	98	138	15.0695
..)))).)))))).))))....))))...)))))))))..	chr17:75212397-75212668(+)$1	1	212	252	13.6223
....(((..((((((.((....)).))).))).)))....	chr17:29632109-29632459(+)$1	1	81	121	13.6803
))))((((.(((..((((......))))......))).))	chr20:36146112-36146375(-)$1	1	65	105	12.8779

#PSSM
d : 0.20	e : 0.10	: : 0.10	[ : 0.10	g : 0.10	" : 0.10	b : 0.10	2 : 0.10	# : 0.10	
# : 0.20	" : 0.20	d : 0.20	e : 0.10	: : 0.10	c : 0.10	2 : 0.10	
e : 0.30	d : 0.30	# : 0.20	c : 0.10	" : 0.10	
e : 0.30	# : 0.30	d : 0.20	c : 0.10	" : 0.10	
e : 0.30	# : 0.30	d : 0.30	c : 0.10	
d : 0.30	e : 0.20	# : 0.20	! : 0.10	f : 0.10	c : 0.10	
e : 0.20	# : 0.20	d : 0.20	! : 0.10	f : 0.10	] : 0.10	c : 0.10	
d : 0.30	c : 0.20	! : 0.20	b : 0.10	# : 0.10	f : 0.10	
c : 0.30	! : 0.20	[ : 0.20	b : 0.10	f : 0.10	d : 0.10	
c : 0.70	[ : 0.10	f : 0.10	d : 0.10	
c : 0.60	b : 0.10	a : 0.10	f : 0.10	d : 0.10	
c : 0.60	[ : 0.20	b : 0.10	! : 0.10	
! : 0.30	c : 0.30	" : 0.20	a : 0.10	d : 0.10	
" : 0.20	! : 0.20	c : 0.20	e : 0.10	[ : 0.10	d : 0.10	] : 0.10	
d : 0.50	" : 0.20	e : 0.10	[ : 0.10	c : 0.10	
d : 0.60	c : 0.20	e : 0.10	[ : 0.10	
d : 0.50	c : 0.20	e : 0.10	o : 0.10	b : 0.10	
d : 0.50	c : 0.20	e : 0.10	o : 0.10	b : 0.10	
l : 0.40	o : 0.20	m : 0.20	d : 0.10	4 : 0.10	
l : 0.50	o : 0.20	m : 0.20	4 : 0.10	
l : 0.50	o : 0.20	m : 0.20	4 : 0.10	
d : 0.20	o : 0.20	m : 0.20	c : 0.10	e : 0.10	l : 0.10	4 : 0.10	
d : 0.50	c : 0.20	e : 0.10	b : 0.10	o : 0.10	
d : 0.50	c : 0.20	e : 0.10	b : 0.10	o : 0.10	
d : 0.60	b : 0.10	e : 0.10	c : 0.10	] : 0.10	
d : 0.40	c : 0.20	b : 0.10	e : 0.10	a : 0.10	5 : 0.10	
] : 0.40	c : 0.20	5 : 0.10	2 : 0.10	3 : 0.10	d : 0.10	
c : 0.40	a : 0.10	f : 0.10	5 : 0.10	2 : 0.10	3 : 0.10	d : 0.10	
c : 0.30	] : 0.20	f : 0.10	2 : 0.10	5 : 0.10	3 : 0.10	6 : 0.10	
c : 0.40	b : 0.10	f : 0.10	2 : 0.10	5 : 0.10	i : 0.10	6 : 0.10	
c : 0.40	] : 0.10	b : 0.10	f : 0.10	e : 0.10	i : 0.10	6 : 0.10	
c : 0.30	e : 0.20	3 : 0.10	f : 0.10	] : 0.10	i : 0.10	6 : 0.10	
e : 0.20	c : 0.20	3 : 0.10	f : 0.10	d : 0.10	i : 0.10	] : 0.10	6 : 0.10	
e : 0.20	] : 0.20	3 : 0.10	2 : 0.10	d : 0.10	i : 0.10	c : 0.10	6 : 0.10	
e : 0.30	d : 0.20	c : 0.20	b : 0.10	2 : 0.10	i : 0.10	
e : 0.20	d : 0.20	c : 0.20	b : 0.10	g : 0.10	] : 0.10	i : 0.10	
d : 0.20	4 : 0.20	e : 0.10	] : 0.10	g : 0.10	= : 0.10	i : 0.10	c : 0.10	
d : 0.20	4 : 0.20	e : 0.10	b : 0.10	g : 0.10	= : 0.10	i : 0.10	] : 0.10	
d : 0.20	4 : 0.20	e : 0.10	b : 0.10	g : 0.10	= : 0.10	] : 0.10	2 : 0.10	
d : 0.20	2 : 0.20	4 : 0.20	e : 0.10	g : 0.10	= : 0.10	b : 0.10	

#score	139.06707944195995
#seq	10
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_UTR_m1_run2.txt

#BEAR
gggggccc"""cccpppppppccc333ccc]gggg	chr12:53434480-53434723(+)$1	243	155	190	30.3982
hhhhhhhh"""bbrrrrrrrrrbb333hhhhhhhh	chr4:174253048-174253320(-)$1	272	68	103	32.0238

#otherMatches

#Seq PSSM
ACUGCAUUGGACCAAAAUAAAUGGGAAAAUCGUGG	chr12:53434480-53434723(+)$1	243	155	190	30.3982
agaggaugaagaugaagaaUAAAUGGCUAUCCUUU	chr4:174253048-174253320(-)$1	272	68	103	32.0238

#DB
((((((((...(((.......)))...))).))))	chr12:53434480-53434723(+)$1	1	155	190	30.3982
((((((((...((.........))...))))))))	chr4:174253048-174253320(-)$1	1	68	103	32.0238

#PSSM
g : 0.50	h : 0.50	
g : 0.50	h : 0.50	
g : 0.50	h : 0.50	
g : 0.50	h : 0.50	
g : 0.50	h : 0.50	
c : 0.50	h : 0.50	
c : 0.50	h : 0.50	
c : 0.50	h : 0.50	
" : 1.00	
" : 1.00	
" : 1.00	
c : 0.50	b : 0.50	
c : 0.50	b : 0.50	
c : 0.50	r : 0.50	
p : 0.50	r : 0.50	
p : 0.50	r : 0.50	
p : 0.50	r : 0.50	
p : 0.50	r : 0.50	
p : 0.50	r : 0.50	
p : 0.50	r : 0.50	
p : 0.50	r : 0.50	
c : 0.50	r : 0.50	
c : 0.50	b : 0.50	
c : 0.50	b : 0.50	
3 : 1.00	
3 : 1.00	
3 : 1.00	
c : 0.50	h : 0.50	
c : 0.50	h : 0.50	
c : 0.50	h : 0.50	
] : 0.50	h : 0.50	
g : 0.50	h : 0.50	
g : 0.50	h : 0.50	
g : 0.50	h : 0.50	
g : 0.50	h : 0.50	

#score	62.42208508959999
#seq	2
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_CDS_m1_run1.txt

#BEAR
#dddd!!ccc!!cccqqqqqqqqccc22ccc]dddd44	chr2:216230190-216230419(-)$1	229	122	160	11.3148
gggg!!ccc!!dddd[bbnnnnnbb]dddd22ccc22g	chr19:14675797-14676036(+)$1	239	163	201	11.8179
eeeee[bb!!gggggggooooooggggggg22bbeeee	chr2:162873536-162873766(-)$1	230	136	174	14.1974
[ccc"""ccc"""cccrrrrrrrrrccc22cccccc]h	chr1:57341659-57341928(+)$1	269	18	56	12.9655
:dddd[ccc[ffffffooooooffffff22cccdddd:	chr7:87196002-87196266(-)$1	264	225	263	11.8447
ee[bb[ccc!!ffffffooooooffffffccc]bb]ee	chr9:124094691-124094908(+)$1	217	171	209	14.1397
bddddggggggg"""cccooooooccc]gggggggfff	chr11:75277658-75277931(+)$1	273	116	154	13.9439
ddddd!!aa!!cccrrrrrrrrrccc22a]a22dddd2	chr10:73588582-73588793(-)$1	211	136	174	13.4102
iiiii:dddd####cccooooooccc22dddd::dddd	chr19:45480550-45480816(+)$1	266	173	211	12.6146
""dddd$$$$$ddddbboooooobb22dddd]dddd33	chr15:79223735-79223949(-)$1	214	86	124	14.0186
dd####a####ffffffooooooffffff333a333dd	chr1:226032216-226032423(+)$1	207	124	162	16.1226
gggggg"""bb[eeeeeooooooeeeee22bb22gggg	chr11:865412-865655(+)$1	243	168	206	13.1736
[dddd[ccc!!a[a[bboooooobb]a]a]cccdddd]	chr4:39448128-39448353(+)$1	225	103	141	17.3142
ccc[a[eeeee$$$$$aooooooa4444eeeee]accc	chr10:33200414-33200695(-)$1	281	101	139	14.0107
dd!!ccc"""ddddrrrrrrrrrdddd333cccdddd3	chr9:139103157-139103396(-)$1	239	183	221	12.5133
dgggggggdddd[a[a[aooooooa]a]a]dddd]ggg	chr20:23615790-23615992(-)$1	202	131	169	14.4620
dd"""============[bblllbb]============	chr6:160450574-160450787(+)$1	213	48	86	12.4531
===========ccc[bboooooobb]ccc333======	chr21:46908232-46908438(+)$1	206	124	162	17.1544
gggbb$$$$$bb!!cccooooooccc22bb4444bb]g	chr11:836670-836878(+)$1	208	129	167	14.1605
c[eeeee####ffffffooooooffffffeeeee]ccc	chr11:121498222-121498515(+)$1	293	218	256	14.0210
ddd==========[cccooooooccc==========CC	chr14:103395046-103395320(+)$1	274	201	239	14.6984
:eeeee####bb!!cccooooooccc22bb22eeeee:	chr4:39448496-39448759(+)$1	263	94	132	13.0498
[bb"""ggggggg!!cccooooooccc22ggggggg44	chr7:103275849-103276101(-)$1	252	199	237	14.9085
eee[bb"""eeeee[bboooooobbeeeee333bbeee	chr7:100853330-100853539(-)$1	209	147	185	14.4105
eeee[============oooooo============eee	chr2:65217034-65217290(+)$1	256	30	68	16.1880
ffffdddd!!gggggggooooooggggggg4444dddd	chr11:71148771-71149026(-)$1	255	193	231	14.8090
iiiiiiii####a[cccooooooccca22iiiiiiiii	chr13:113798218-113798464(+)$1	246	185	223	16.9395
dd[ggggggg!!ffffffnnnnnffffff]ggggggg]	chr17:4686057-4686267(+)$1	210	117	155	11.7952
#ccc[bb[a"""bb[bboooooobb]bb333abbccc4	chrX:2854736-2854989(-)$1	253	80	118	14.9516
dddd$$$$$eeeee[a[aooooooa]a]eeeeedddd]	chr14:70480079-70480309(+)$1	230	142	180	14.4136
ffffff$$$$$ccc[bboooooobbccc4444ffffff	chr19:47290633-47290862(-)$1	229	190	228	14.1102
"""ggggggg[dddd[aooooooa]dddd]ggggggg2	chr5:179153598-179153856(+)$1	258	158	196	14.0956
ff]bbeeeee[ccc[cccooooooccc22ccc]eeeee	chr10:102114151-102114373(+)$1	222	134	172	13.3761
ee!!dddd!!dddd[cccooooooccc]dddd]dddde	chr16:29899018-29899238(-)$1	220	33	71	14.3300
!!ccc[ccc"""ccc[cccnnnnnccc]ccc333ccc]	chr1:230845775-230846012(-)$1	237	143	181	13.3749
fccc!!ccceeeeerrrrrrrrreeeee22ccc22ccc	chr2:26611772-26612016(+)$1	244	133	171	10.9980
hhhh[dddd[gggggggooooooggggggg333dddd]	chr17:7011680-7011908(-)$1	228	164	202	14.9719
eeee"""ddddffffffooooooffffff22dddd]ee	chr17:61830028-61830258(-)$1	230	173	211	14.1450
fff[dddd!!bb!!a[bbnnnnnbb]a22bb]dddd22	chr14:81945873-81946113(-)$1	240	78	116	11.4865
dddd!!eeeee[eeeeeooooooeeeeeeeeee22ddd	chr9:139106899-139107133(-)$1	234	187	225	13.0829
dddd!!cccxxxxxxxxxxxxxxxccc333dddd]ddd	chr7:91746255-91746482(-)$1	227	4	42	11.0298
c$$$$$dddd[ccc[bboooooobb22ccc]ddddccc	chr1:12014799-12015023(+)$1	224	11	49	14.1430
ddd[a[dddd[eeeeeooooooeeeeedddd]a]dddd	chr20:34144683-34144949(+)$1	266	151	189	12.7891
fggggggg####ccc[ccclllccc]ccc333gggggg	chr19:10394184-10394468(+)$1	284	9	47	13.3530
[ccc[ggggggg"""bboooooobb333gggggggccc	chr1:1372392-1372635(+)$1	243	86	124	16.0307
hdddd!!eeeee!!cccnnnnnccc]eeeee]dddd44	chr17:28783392-28783645(+)$1	253	59	97	11.9939
##ccc[ccc[a[ccc[bbnnnnnbb]cccaccc]ccc4	chr6:33272119-33272426(-)$1	307	20	58	12.9650
eee[a[dddd!!ccc[annnnnaccc22ddddaeeeee	chr12:7175667-7175935(+)$1	268	189	227	12.5881
cc[bb!!dddd!!ddddoooooodddd4444dddd]bb	chr1:116941941-116942153(+)$1	212	93	131	13.5296

#otherMatches

#Seq PSSM
GGAGAAAAUGGCCAGAUGAUGAGCUGCACAUGUCUUGG	chr2:216230190-216230419(-)$1	229	122	160	11.3148
ACAGCUGGGCUGGGUGAGGGGGUCUGACUUUCUCCUUC	chr19:14675797-14676036(+)$1	239	163	201	11.8179
GUGAAUGAUAAAGGUAUUUUCUCAUAUUUUACUCUUCA	chr2:162873536-162873766(-)$1	230	136	174	14.1974
GUGUGAGUCUGGAGGGAGAGGGGAACCCGAGGAGCAGC	chr1:57341659-57341928(+)$1	269	18	56	12.9655
AGAUGUCAUCACAUCUGUUAGGAGGUGUUAAUGUAUCA	chr7:87196002-87196266(-)$1	264	225	263	11.8447
GGCUGAGCUGGCUGCCUGAGGAGGGGCAGGGCCCACCC	chr9:124094691-124094908(+)$1	217	171	209	14.1397
CUGGAAGCUGGGCAGCCGACUGUACGGACCCAGCUCAG	chr11:75277658-75277931(+)$1	273	116	154	13.9439
CCCCGCAGCAAGCCCCAGCCAAAGGUAAGACAACGGGC	chr10:73588582-73588793(-)$1	211	136	174	13.4102
CGCUCCCCUGCAGCCAGGACCCACUGUCCAGGAGGCCA	chr19:45480550-45480816(+)$1	266	173	211	12.6146
GUGUCCUUCUUCCAGGCGGAACAGCAGCUGGUGGACUG	chr15:79223735-79223949(-)$1	214	86	124	14.0186
CGAGAACAGGGGCCUCUGAGGCUGGAGGCAGGGGGACG	chr1:226032216-226032423(+)$1	207	124	162	16.1226
CCUCACCAACGCCUGGAGCAUCAUCCAGACCGACGUGA	chr11:865412-865655(+)$1	243	168	206	13.1736
AGGGGCUGAAGCUUGGCAUCUCCGCGAUGGUCACCCUG	chr4:39448128-39448353(+)$1	225	103	141	17.3142
UGGUGUUUGCAAGUGUCGUGUGUGUGAGUGCAACCCCA	chr10:33200414-33200695(-)$1	281	101	139	14.0107
CUUUGAGGAAAUGGCUAAAGAAUCCAUGGACUCGGUGA	chr9:139103157-139103396(-)$1	239	183	221	12.5133
UCAUACACUGCAGAGGGgugugugugugugugugugug	chr20:23615790-23615992(-)$1	202	131	169	14.4620
ACUUUUGUGAUGGUCACAGCCCUGCGGUGACUAUUACA	chr6:160450574-160450787(+)$1	213	48	86	12.4531
AGGUCAGUGACGGAUAUGUCUGGGUUUCUGUGGUUGCU	chr21:46908232-46908438(+)$1	206	124	162	17.1544
UGGAGAUCAUCGCUGGUAUCCUCGCCUACGCCUACUAC	chr11:836670-836878(+)$1	208	129	167	14.1605
UGGGGUCCGCAAUCUUCUCCUCUGGGGAUGACCUGGGU	chr11:121498222-121498515(+)$1	293	218	256	14.0210
UCCGCGUGGGGCUCGGCCCUGGCGCUAGCCCCGUGCGU	chr14:103395046-103395320(+)$1	274	201	239	14.6984
CCCGCCAACCCCUAUGCUGACUCGCACUGGAGGGCGGC	chr4:39448496-39448759(+)$1	263	94	132	13.0498
AUUAUUCAUAUCUCAGCUAUCAUGAGCCCAGGUAUGUU	chr7:103275849-103276101(-)$1	252	199	237	14.9085
GGAAGGAAUCGUGGAGCAGGUGAGCCCACGCAGCCUCC	chr7:100853330-100853539(-)$1	209	147	185	14.4105
CAGCCUGGUGUCGGGCGCCGCCUCGCUCGAUGCCAGCU	chr2:65217034-65217290(+)$1	256	30	68	16.1880
CAGCGGGGCAUUUGGCAGACACAUGCUAAGCUUUCUCC	chr11:71148771-71149026(-)$1	255	193	231	14.8090
UGGCAGGUAACAGUAGGAUGUCCCCUCGGGCCUGCUGG	chr13:113798218-113798464(+)$1	246	185	223	16.9395
UAUGGGAUCGGUGCGAGGCGCCCCCUCGCGUGGUCCCC	chr17:4686057-4686267(+)$1	210	117	155	11.7952
UGCAGAGUGAUUGACGGCCAAGACCUUCUGCCCUUGCU	chrX:2854736-2854989(-)$1	253	80	118	14.9516
CAGGAAUCAGGCCCAGGAGAAAAAUGUGGGGCCCCUGA	chr14:70480079-70480309(+)$1	230	142	180	14.4136
UCCUGGAUCUUGCGAGGUCAGCUCCCGCUCCCCCGGGA	chr19:47290633-47290862(-)$1	229	190	228	14.1102
AGAGGUAAAGGAAAGGGGUCACACAUUUUGUUUUACCA	chr5:179153598-179153856(+)$1	258	158	196	14.0956
GUGGGUUGGCUGCUUGUGCGCAAACACCCAGCUGUCAA	chr10:102114151-102114373(+)$1	222	134	172	13.3761
CCGAGGCCCCGAGGAGAAGGACAGUUCACCUCAGGCUG	chr16:29899018-29899238(-)$1	220	33	71	14.3300
AACUGGAUGUUGCUGCUGAGAAGAUUGACAGGUUCAUG	chr1:230845775-230846012(-)$1	237	143	181	13.3749
CCCUUCUCAUUGAGGAAACCAAACUCAGAUUGACUAGG	chr2:26611772-26612016(+)$1	244	133	171	10.9980
ACAGGUUUGCUGGGCUCAGUGCCGAGUCUGCAACAGGG	chr17:7011680-7011908(-)$1	228	164	202	14.9719
CCUUUCUGGGUUCUUAGUCUUCUCUGAGAUGACCUUAA	chr17:61830028-61830258(-)$1	230	173	211	14.1450
CAGAUGCACAAGUUCCAGUCUUCCUAGCCCUCUGCAAA	chr14:81945873-81946113(-)$1	240	78	116	11.4865
CCCAGCCGGUGUGUGCAAAGGCAUGUACUGCUGUAUGG	chr9:139106899-139107133(-)$1	234	187	225	13.0829
CCCACUGUCAAUCAAAGACUUAAAGACUCAUGGGUAGA	chr7:91746255-91746482(-)$1	227	4	42	11.0298
CCACACUGGGUGAGAUGUAGCCCCAGCCUCCCCCAGGG	chr1:12014799-12015023(+)$1	224	11	49	14.1430
UCUAUGAGCUCUCGCCCAUGAUGGUGAAGCUGACGGAG	chr20:34144683-34144949(+)$1	266	151	189	12.7891
UUGGCAGCCAGUGGGCAAGAACCUUACCCUACGCUGCC	chr19:10394184-10394468(+)$1	284	9	47	13.3530
AUACACCGAGUUCCCCUUCGGCCAGCACAGCUCGGGUG	chr1:1372392-1372635(+)$1	243	86	124	16.0307
GAUUCCACAUCUCUUAAUGCUUUUAUAGAUGAGAAUAU	chr17:28783392-28783645(+)$1	253	59	97	11.9939
AAGUGUCCCUGAUGCCAGCAACCCUUGCACGGGCCGCC	chr6:33272119-33272426(-)$1	307	20	58	12.9650
GAGAGAUGAUAGCCAUGGGUGACUGGGAGUCACCUUCU	chr12:7175667-7175935(+)$1	268	189	227	12.5881
UUCCCAGGUUCCUGCCAUCUCCCUGGCUUAUGAGCAGG	chr1:116941941-116942153(+)$1	212	93	131	13.5296

#DB
.((((..(((..(((........)))..))).))))..	chr2:216230190-216230419(-)$1	1	122	160	11.3148
((((..(((..((((.((.....)).))))..)))..)	chr19:14675797-14676036(+)$1	1	163	201	11.8179
(((((.((..(((((((......)))))))..))))))	chr2:162873536-162873766(-)$1	1	136	174	14.1974
.(((...(((...(((.........)))..)))))).)	chr1:57341659-57341928(+)$1	1	18	56	12.9655
.((((.(((.((((((......))))))..))))))).	chr7:87196002-87196266(-)$1	1	225	263	11.8447
((.((.(((..((((((......))))))))).)).))	chr9:124094691-124094908(+)$1	1	171	209	14.1397
)))))(((((((...(((......))).)))))))(((	chr11:75277658-75277931(+)$1	1	116	154	13.9439
(((((..((..(((.........)))..).)..)))).	chr10:73588582-73588793(-)$1	1	136	174	13.4102
))))).((((....(((......)))..))))..((((	chr19:45480550-45480816(+)$1	1	173	211	12.6146
..((((.....((((((......))..)))).))))..	chr15:79223735-79223949(-)$1	1	86	124	14.0186
((....(....((((((......))))))...)...))	chr1:226032216-226032423(+)$1	1	124	162	16.1226
((((((...((.(((((......)))))..))..))))	chr11:865412-865655(+)$1	1	168	206	13.1736
.((((.(((..(.(.((......)).).).))))))).	chr4:39448128-39448353(+)$1	1	103	141	17.3142
(((.(.(((((.....(......)....))))).))))	chr10:33200414-33200695(-)$1	1	101	139	14.0107
((..(((...((((.........))))...))))))).	chr9:139103157-139103396(-)$1	1	183	221	12.5133
)(((((((((((.(.(.(......).).).)))).)))	chr20:23615790-23615992(-)$1	1	131	169	14.4620
((...((((((((((((.((...)).))))))))))))	chr6:160450574-160450787(+)$1	1	48	86	12.4531
((((((((((((((.((......)).)))...))))))	chr21:46908232-46908438(+)$1	1	124	162	17.1544
(((((.....((..(((......)))..))....)).)	chr11:836670-836878(+)$1	1	129	167	14.1605
(.(((((....((((((......))))))))))).)))	chr11:121498222-121498515(+)$1	1	218	256	14.0210
)))((((((((((.(((......)))))))))))))))	chr14:103395046-103395320(+)$1	1	201	239	14.6984
.(((((....((..(((......)))..))..))))).	chr4:39448496-39448759(+)$1	1	94	132	13.0498
.((...(((((((..(((......)))..)))))))..	chr7:103275849-103276101(-)$1	1	199	237	14.9085
(((.((...(((((.((......)))))))...)))))	chr7:100853330-100853539(-)$1	1	147	185	14.4105
((((.((((((((((((......)))))))))))))))	chr2:65217034-65217290(+)$1	1	30	68	16.1880
))))((((..(((((((......)))))))....))))	chr11:71148771-71149026(-)$1	1	193	231	14.8090
((((((((....(.(((......))))..)))))))))	chr13:113798218-113798464(+)$1	1	185	223	16.9395
((.(((((((..((((((.....)))))).))))))).	chr17:4686057-4686267(+)$1	1	117	155	11.7952
.(((.((.(...((.((......)).))...)))))).	chrX:2854736-2854989(-)$1	1	80	118	14.9516
((((.....(((((.(.(......).).))))))))).	chr14:70480079-70480309(+)$1	1	142	180	14.4136
((((((.....(((.((......)))))....))))))	chr19:47290633-47290862(-)$1	1	190	228	14.1102
...(((((((.((((.(......).)))).))))))).	chr5:179153598-179153856(+)$1	1	158	196	14.0956
)).))(((((.(((.(((......)))..))).)))))	chr10:102114151-102114373(+)$1	1	134	172	13.3761
((..((((..((((.(((......))).)))).)))))	chr16:29899018-29899238(-)$1	1	33	71	14.3300
..(((.(((...(((.(((.....))).)))...))).	chr1:230845775-230846012(-)$1	1	143	181	13.3749
)(((..((((((((.........)))))..)))..)))	chr2:26611772-26612016(+)$1	1	133	171	10.9980
((((.((((.(((((((......)))))))...)))).	chr17:7011680-7011908(-)$1	1	164	202	14.9719
((((...((((((((((......))))))..)))).))	chr17:61830028-61830258(-)$1	1	173	211	14.1450
(((.((((..((..(.((.....)).)..)).))))..	chr14:81945873-81946113(-)$1	1	78	116	11.4865
((((..(((((.(((((......))))))))))..)))	chr9:139106899-139107133(-)$1	1	187	225	13.0829
((((..(((...............)))...)))).)))	chr7:91746255-91746482(-)$1	1	4	42	11.0298
(.....((((.(((.((......))..))).)))))))	chr1:12014799-12015023(+)$1	1	11	49	14.1430
(((.(.((((.(((((......))))))))).).))))	chr20:34144683-34144949(+)$1	1	151	189	12.7891
((((((((....(((.(((...))).)))...))))))	chr19:10394184-10394468(+)$1	1	9	47	13.3530
.(((.(((((((...((......))...))))))))))	chr1:1372392-1372635(+)$1	1	86	124	16.0307
(((((..(((((..(((.....))).))))).))))..	chr17:28783392-28783645(+)$1	1	59	97	11.9939
..(((.(((.(.(((.((.....)).))))))).))).	chr6:33272119-33272426(-)$1	1	20	58	12.9650
(((.(.((((..(((.(.....))))..))))))))))	chr12:7175667-7175935(+)$1	1	189	227	12.5881
((.((..((((..((((......))))....)))).))	chr1:116941941-116942153(+)$1	1	93	131	13.5296

#PSSM
d : 0.22	e : 0.14	f : 0.12	[ : 0.08	c : 0.08	# : 0.06	g : 0.06	: : 0.04	i : 0.04	" : 0.04	h : 0.04	b : 0.02	= : 0.02	! : 0.02	
d : 0.30	e : 0.16	c : 0.12	g : 0.10	f : 0.08	i : 0.04	" : 0.04	= : 0.02	[ : 0.02	b : 0.02	! : 0.02	h : 0.02	$ : 0.02	# : 0.02	
d : 0.24	e : 0.14	c : 0.14	g : 0.10	[ : 0.06	f : 0.06	i : 0.04	! : 0.04	" : 0.04	# : 0.02	= : 0.02	b : 0.02	] : 0.02	h : 0.02	$ : 0.02	
d : 0.20	g : 0.12	c : 0.12	e : 0.10	[ : 0.10	b : 0.08	i : 0.04	! : 0.04	" : 0.04	= : 0.04	f : 0.04	# : 0.02	h : 0.02	$ : 0.02	
d : 0.20	b : 0.10	g : 0.10	! : 0.08	" : 0.08	[ : 0.08	e : 0.06	a : 0.06	c : 0.06	i : 0.04	= : 0.04	$ : 0.04	# : 0.02	f : 0.02	
[ : 0.18	! : 0.16	g : 0.14	d : 0.10	= : 0.08	" : 0.06	$ : 0.06	e : 0.06	b : 0.04	: : 0.02	# : 0.02	c : 0.02	i : 0.02	f : 0.02	
c : 0.18	d : 0.16	g : 0.14	! : 0.08	" : 0.08	$ : 0.08	e : 0.08	= : 0.08	b : 0.04	a : 0.02	# : 0.02	i : 0.02	
c : 0.20	d : 0.20	g : 0.14	$ : 0.08	e : 0.08	= : 0.08	# : 0.06	" : 0.06	b : 0.02	a : 0.02	i : 0.02	[ : 0.02	
c : 0.20	d : 0.16	g : 0.10	# : 0.10	! : 0.08	$ : 0.08	e : 0.08	= : 0.08	" : 0.06	a : 0.04	
! : 0.16	d : 0.14	e : 0.14	g : 0.10	# : 0.10	= : 0.08	[ : 0.06	$ : 0.06	" : 0.06	c : 0.04	b : 0.02	x : 0.02	
! : 0.14	g : 0.12	e : 0.12	# : 0.10	d : 0.10	b : 0.08	= : 0.08	[ : 0.08	" : 0.06	$ : 0.04	f : 0.02	x : 0.02	a : 0.02	
d : 0.12	g : 0.12	f : 0.10	c : 0.10	e : 0.10	! : 0.08	" : 0.06	# : 0.06	[ : 0.06	= : 0.06	b : 0.06	a : 0.02	$ : 0.02	x : 0.02	
c : 0.20	f : 0.12	e : 0.12	d : 0.10	! : 0.10	g : 0.08	" : 0.06	= : 0.06	[ : 0.04	# : 0.02	$ : 0.02	a : 0.02	b : 0.02	x : 0.02	
c : 0.22	d : 0.12	f : 0.12	e : 0.12	! : 0.10	g : 0.06	" : 0.04	a : 0.04	= : 0.04	[ : 0.04	# : 0.02	$ : 0.02	b : 0.02	x : 0.02	
c : 0.24	[ : 0.20	f : 0.12	d : 0.08	g : 0.06	r : 0.06	e : 0.06	" : 0.04	= : 0.04	$ : 0.02	! : 0.02	a : 0.02	x : 0.02	
c : 0.22	b : 0.16	[ : 0.14	f : 0.12	g : 0.06	r : 0.06	e : 0.06	a : 0.04	= : 0.04	q : 0.02	$ : 0.02	x : 0.02	d : 0.02	
c : 0.24	b : 0.22	f : 0.10	r : 0.08	g : 0.06	a : 0.06	o : 0.04	e : 0.04	[ : 0.04	= : 0.04	q : 0.02	x : 0.02	d : 0.02	
o : 0.57	c : 0.12	r : 0.08	b : 0.06	a : 0.04	n : 0.04	q : 0.02	[ : 0.02	f : 0.02	x : 0.02	
o : 0.69	n : 0.12	r : 0.08	c : 0.04	q : 0.02	b : 0.02	x : 0.02	
o : 0.69	n : 0.14	r : 0.08	q : 0.02	b : 0.02	x : 0.02	l : 0.02	
o : 0.69	n : 0.14	r : 0.08	l : 0.04	q : 0.02	x : 0.02	
o : 0.69	n : 0.14	r : 0.08	l : 0.04	q : 0.02	x : 0.02	
o : 0.65	n : 0.10	r : 0.08	c : 0.04	q : 0.02	f : 0.02	l : 0.02	x : 0.02	e : 0.02	a : 0.02	
b : 0.24	c : 0.20	f : 0.12	o : 0.12	e : 0.08	g : 0.06	a : 0.04	d : 0.04	r : 0.02	= : 0.02	n : 0.02	x : 0.02	
c : 0.32	b : 0.24	f : 0.12	e : 0.08	g : 0.06	d : 0.04	a : 0.04	r : 0.02	4 : 0.02	= : 0.02	] : 0.02	
c : 0.32	] : 0.22	f : 0.12	e : 0.10	g : 0.06	d : 0.06	2 : 0.04	4 : 0.02	= : 0.02	3 : 0.02	
c : 0.22	2 : 0.16	f : 0.12	e : 0.12	a : 0.10	d : 0.08	g : 0.06	= : 0.06	4 : 0.02	b : 0.02	3 : 0.02	
2 : 0.20	c : 0.12	f : 0.12	] : 0.12	e : 0.10	d : 0.08	g : 0.06	3 : 0.06	= : 0.06	4 : 0.04	b : 0.02	
2 : 0.16	d : 0.14	c : 0.12	g : 0.10	f : 0.10	e : 0.10	a : 0.06	3 : 0.06	= : 0.06	b : 0.04	4 : 0.04	
d : 0.12	g : 0.12	3 : 0.12	e : 0.12	c : 0.10	2 : 0.10	] : 0.10	= : 0.06	b : 0.06	4 : 0.04	i : 0.02	a : 0.02	
c : 0.20	d : 0.14	3 : 0.12	g : 0.10	e : 0.10	2 : 0.08	4 : 0.08	= : 0.06	b : 0.04	a : 0.02	i : 0.02	] : 0.02	
c : 0.16	d : 0.16	3 : 0.12	] : 0.10	g : 0.10	2 : 0.08	e : 0.08	= : 0.06	4 : 0.06	b : 0.02	i : 0.02	a : 0.02	
d : 0.18	c : 0.14	g : 0.12	e : 0.10	= : 0.08	] : 0.06	a : 0.06	3 : 0.06	b : 0.04	2 : 0.04	4 : 0.04	: : 0.02	i : 0.02	f : 0.02	
d : 0.32	g : 0.12	b : 0.08	= : 0.08	e : 0.08	2 : 0.06	] : 0.06	c : 0.04	3 : 0.04	4 : 0.04	: : 0.02	i : 0.02	f : 0.02	
d : 0.34	g : 0.14	c : 0.10	e : 0.08	= : 0.08	b : 0.06	] : 0.06	2 : 0.04	3 : 0.02	a : 0.02	i : 0.02	f : 0.02	
d : 0.32	c : 0.18	e : 0.12	g : 0.12	] : 0.06	= : 0.06	f : 0.04	2 : 0.02	3 : 0.02	b : 0.02	i : 0.02	
d : 0.26	e : 0.16	c : 0.16	g : 0.10	4 : 0.06	2 : 0.04	] : 0.04	f : 0.04	= : 0.04	3 : 0.02	C : 0.02	i : 0.02	b : 0.02	
e : 0.16	d : 0.12	4 : 0.10	g : 0.10	] : 0.10	c : 0.10	2 : 0.06	: : 0.04	f : 0.04	3 : 0.04	= : 0.04	h : 0.02	C : 0.02	i : 0.02	b : 0.02	

#score	674.212663117088
#seq	49
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_transcript_m2_run1.txt

#BEAR
ddddqqqqqqqqdddd	chr6:31802691-31802931(+)$1	240	67	83	14.6164
ffffqqqqqqqqffff	chr16:2820994-2821290(+)$1	296	166	182	12.3297
[cccqqqqqqqqccc]	chr16:89627017-89627221(+)$1	204	80	96	13.5716
ffffqqqqqqqqffff	chr15:66797024-66797272(-)$1	248	211	227	12.3297
ddddqqqqqqqqdddd	chr22:50010530-50010795(-)$1	265	159	175	14.6164
"cccqqqqqqqqccc]	chr3:6618484-6618792(+)$1	308	49	65	13.4253
:cccqqqqqqqqcccD	chr3:128888890-128889156(-)$1	266	0	16	11.7688
ddddqqqqqqqqdddd	chr11:62284754-62284997(-)$1	243	68	84	14.6164
f[bbqqqqqqqqbb]f	chr1:24018199-24018420(+)$1	221	107	123	12.2602
ddddqqqqqqqqdddd	chr7:120893672-120893897(+)$1	225	17	33	14.6164
c[bbqqqqqqqqbb]c	chrX:73040703-73041036(-)$1	333	145	161	12.4556
ecccqqqqqqqqccc2	chr14:102547810-102548056(-)$1	246	18	34	13.3921
ccccqqqqqqqqccc2	chr8:125561925-125562192(+)$1	267	169	185	13.3142
[cccqqqqqqqqccc2	chr11:62295148-62295394(-)$1	246	173	189	13.3648
eeeeqqqqqqqqeeee	chr2:98263442-98263704(+)$1	262	58	74	13.4290
eeeeqqqqqqqqeeee	chr3:197677737-197677950(+)$1	213	13	29	13.4290
ggggqqqqqqqqgggg	chr3:6624689-6624928(+)$1	239	157	173	13.0270
ddddqqqqqqqqdddd	chr17:16345049-16345280(+)$1	231	199	215	14.6164
[cccqqqqqqqqccc]	chr7:97481363-97481592(-)$1	229	7	23	13.5716
ddddqqqqqqqqdddd	chr11:63743619-63743889(+)$1	270	31	47	14.6164
ddddqqqqqqqqdddd	chr5:1815930-1816181(+)$1	251	93	109	14.6164
eeeeqqqqqqqqeeee	chr12:56510457-56510660(+)$1	203	13	29	13.4290
ddddqqqqqqqqdddd	chr11:60658390-60658661(-)$1	271	156	172	14.6164
ddddqqqqqqqqdddd	chr7:75695655-75695895(+)$1	240	30	46	14.6164
eeeeqqqqqqqqeeee	chr8:101715361-101715584(-)$1	223	11	27	13.4290
ddddqqqqqqqqdddd	chr7:119433521-119433786(-)$1	265	28	44	14.6164
!cccqqqqqqqqccc4	chr20:30488958-30489165(+)$1	207	175	191	13.5189
e[bbqqqqqqqqbb]e	chr8:23429820-23430072(+)$1	252	34	50	12.5912
ddddqqqqqqqqdddd	chr3:128888981-128889204(-)$1	223	77	93	14.6164
ggggqqqqqqqqgggg	chr11:118279750-118279997(+)$1	247	170	186	13.0270
eeeeqqqqqqqqeeee	chr7:120887477-120887718(+)$1	241	28	44	13.4290
[cccqqqqqqqqcccg	chr11:5290583-5290801(-)$1	218	156	172	13.5665
f!!aqqqqqqqqa22f	chr16:1749181-1749427(+)$1	246	10	26	12.1940
ddddqqqqqqqqdddd	chr17:56408159-56408411(-)$1	252	201	217	14.6164
ffffqqqqqqqqffff	chr7:120888892-120889166(+)$1	274	190	206	12.3297
====qqqqqqqq====	chr17:4848897-4849130(-)$1	233	152	168	13.1464
ffffqqqqqqqqffff	chr6:33172048-33172289(+)$1	241	47	63	12.3297
ddddqqqqqqqqdddd	chr11:62284850-62285088(-)$1	238	159	175	14.6164
ffffqqqqqqqqffff	chr11:5289673-5289907(-)$1	234	158	174	12.3297
ddddqqqqqqqqdddd	chr12:56510331-56510544(+)$1	213	188	204	14.6164
eeeeqqqqqqqqeeee	chr5:132203079-132203289(+)$1	210	85	101	13.4290
e[bbqqqqqqqqbb]e	chr6:147618261-147618534(+)$1	273	186	202	12.5912
ddddqqqqqqqqdddd	chr4:56461337-56461565(-)$1	228	124	140	14.6164
ddddqqqqqqqqdddd	chrX:153063812-153064048(+)$1	236	125	141	14.6164
eeeeqqqqqqqqeeee	chr11:75116557-75116775(+)$1	218	118	134	13.4290
ddddqqqqqqqqdddd	chr15:20633134-20633420(-)$1	286	134	150	14.6164
ddddqqqqqqqqdddd	chr19:18499666-18499931(+)$1	265	135	151	14.6164
ddddqqqqqqqqdddd	chr7:120897012-120897290(+)$1	278	68	84	14.6164
ggggqqqqqqqqgggg	chr1:165624532-165624788(+)$1	256	185	201	13.0270
h[bbqqqqqqqqbbhh	chr11:65622664-65622907(-)$1	243	139	155	11.9811
ddddqqqqqqqqdddd	chr6:31694740-31694991(-)$1	251	151	167	14.6164
ddddqqqqqqqqdddd	chr11:5274334-5274606(-)$1	272	135	151	14.6164
!!bbqqqqqqqqbb33	chr11:82869035-82869294(+)$1	259	46	62	12.4146
ddddqqqqqqqqdddd	chr19:46190663-46190958(-)$1	295	36	52	14.6164
eeeeqqqqqqqqeeee	chr8:91269472-91269746(+)$1	274	149	165	13.4290
ddddqqqqqqqqdddd	chr16:227341-227619(+)$1	278	193	209	14.6164
ddddqqqqqqqqdddd	chr11:62294489-62294762(-)$1	273	55	71	14.6164
[cccqqqqqqqqcccc	chr11:63743695-63743954(+)$1	259	222	238	13.5801
dddaqqqqqqqqa]dd	chr11:67353784-67354049(+)$1	265	101	117	13.8662
ddddqqqqqqqqdddd	chr19:4036787-4037032(+)$1	245	173	189	14.6164
ccbbqqqqqqqqbb]c	chr7:22862286-22862557(-)$1	271	14	30	12.5064
[cccqqqqqqqqccc]	chr8:100890305-100890590(-)$1	285	192	208	13.5716
eeeeqqqqqqqqeeee	chr8:56986518-56986722(-)$1	204	177	193	13.4290
ddddqqqqqqqqdddd	chr7:100276510-100276822(+)$1	312	1	17	14.6164
ddddqqqqqqqqdddd	chr7:120897349-120897583(+)$1	234	210	226	14.6164
ddddqqqqqqqqdddd	chr19:42364227-42364460(+)$1	233	14	30	14.6164
ggggqqqqqqqqgggg	chr11:5269494-5269750(-)$1	256	183	199	13.0270

#otherMatches

#Seq PSSM
GGGAGCAGGGGAUCCC	chr6:31802691-31802931(+)$1	240	67	83	14.6164
GCCAGGGAGGCAUGGC	chr16:2820994-2821290(+)$1	296	166	182	12.3297
UCGGCUGUUUUCCUGC	chr16:89627017-89627221(+)$1	204	80	96	13.5716
GUUCGGAGCAUAGAAU	chr15:66797024-66797272(-)$1	248	211	227	12.3297
GUGGAUGGAAAGUCGC	chr22:50010530-50010795(-)$1	265	159	175	14.6164
agagaaaaaugacuca	chr3:6618484-6618792(+)$1	308	49	65	13.4253
GGGUGGAAAAAAACCG	chr3:128888890-128889156(-)$1	266	0	16	11.7688
GGAAAAGUAACAUUCC	chr11:62284754-62284997(-)$1	243	68	84	14.6164
CUCCAUCAUGGCGGUG	chr1:24018199-24018420(+)$1	221	107	123	12.2602
aucuggguaaaaagau	chr7:120893672-120893897(+)$1	225	17	33	14.6164
AAGUAACUAAAAGCCU	chrX:73040703-73041036(-)$1	333	145	161	12.4556
AGGGAUGACUUACCUG	chr14:102547810-102548056(-)$1	246	18	34	13.3921
UGGUAUAUUGUGACCA	chr8:125561925-125562192(+)$1	267	169	185	13.3142
CCAAAGUGGACAUUGA	chr11:62295148-62295394(-)$1	246	173	189	13.3648
GCGUCAUAAUUCACGU	chr2:98263442-98263704(+)$1	262	58	74	13.4290
CGAGGUGGGAAACUUG	chr3:197677737-197677950(+)$1	213	13	29	13.4290
aaugaugauauacauu	chr3:6624689-6624928(+)$1	239	157	173	13.0270
GGAAAUUGUAAAUUCC	chr17:16345049-16345280(+)$1	231	199	215	14.6164
GCUGUCAAAGCUUAGG	chr7:97481363-97481592(-)$1	229	7	23	13.5716
GGGGAAUACUGACUCC	chr11:63743619-63743889(+)$1	270	31	47	14.6164
CCACUAGAGCGUGUGG	chr5:1815930-1816181(+)$1	251	93	109	14.6164
GAUUCCGUGUACAAUC	chr12:56510457-56510660(+)$1	203	13	29	13.4290
GGUCUGAGUGGUGGCC	chr11:60658390-60658661(-)$1	271	156	172	14.6164
CUCCAUCAAGAAGGGG	chr7:75695655-75695895(+)$1	240	30	46	14.6164
AUGAAAAGAAACUUGU	chr8:101715361-101715584(-)$1	223	11	27	13.4290
ugguaaccucaaacca	chr7:119433521-119433786(-)$1	265	28	44	14.6164
gugcugaccccugcga	chr20:30488958-30489165(+)$1	207	175	191	13.5189
GUGCUUGUGCGUGUCU	chr8:23429820-23430072(+)$1	252	34	50	12.5912
AACUACAAAAAAAGUU	chr3:128888981-128889204(-)$1	223	77	93	14.6164
GUUUUCUCCAUCAGAU	chr11:118279750-118279997(+)$1	247	170	186	13.0270
aaguaaaccaacauuu	chr7:120887477-120887718(+)$1	241	28	44	13.4290
UAUUUUGACAUUAAUU	chr11:5290583-5290801(-)$1	218	156	172	13.5665
CUGUGGGGAUGAAAUG	chr16:1749181-1749427(+)$1	246	10	26	12.1940
GCUGAAUGCGGGCGGC	chr17:56408159-56408411(-)$1	252	201	217	14.6164
auacaaucagaaguau	chr7:120888892-120889166(+)$1	274	190	206	12.3297
UUUUUUCUGAAUAAAA	chr17:4848897-4849130(-)$1	233	152	168	13.1464
GGGUUAGUUGGUAUUC	chr6:33172048-33172289(+)$1	241	47	63	12.3297
GGAAAAGUAACAUUCC	chr11:62284850-62285088(-)$1	238	159	175	14.6164
CAGAAGCUGGUGUCUG	chr11:5289673-5289907(-)$1	234	158	174	12.3297
ACAGCAAACUAACUGU	chr12:56510331-56510544(+)$1	213	188	204	14.6164
UCUUAAUUUUUAAAGA	chr5:132203079-132203289(+)$1	210	85	101	13.4290
aaagaacaaaaccugu	chr6:147618261-147618534(+)$1	273	186	202	12.5912
GUUGUAAAUGUUCAAU	chr4:56461337-56461565(-)$1	228	124	140	14.6164
CCUGGGACUGCACAGG	chrX:153063812-153064048(+)$1	236	125	141	14.6164
AUUCUGGAGUCUGGAU	chr11:75116557-75116775(+)$1	218	118	134	13.4290
ggucgaagccaagacu	chr15:20633134-20633420(-)$1	286	134	150	14.6164
GCCCUGUGGAAUGGGC	chr19:18499666-18499931(+)$1	265	135	151	14.6164
cauggacauaaacaug	chr7:120897012-120897290(+)$1	278	68	84	14.6164
AGUGGACCCAAAUGCU	chr1:165624532-165624788(+)$1	256	185	201	13.0270
CACACCUGCCCUUGGG	chr11:65622664-65622907(-)$1	243	139	155	11.9811
CAAUAAAAUAGAAUUG	chr6:31694740-31694991(-)$1	251	151	167	14.6164
GCUUUAUUCUGCAAGC	chr11:5274334-5274606(-)$1	272	135	151	14.6164
UAAUUGUGUUCUGUGG	chr11:82869035-82869294(+)$1	259	46	62	12.4146
GGGCAAGAAGAAGUCC	chr19:46190663-46190958(-)$1	295	36	52	14.6164
caauggugaaagauug	chr8:91269472-91269746(+)$1	274	149	165	13.4290
UGAGUUUUUUCCCUCA	chr16:227341-227619(+)$1	278	193	209	14.6164
CUUGAAGAGCCCCAAG	chr11:62294489-62294762(-)$1	273	55	71	14.6164
AUCAUGACCUCUUGAU	chr11:63743695-63743954(+)$1	259	222	238	13.5801
GGACUUGCUGCUGAUC	chr11:67353784-67354049(+)$1	265	101	117	13.8662
gugcacacacacgcac	chr19:4036787-4037032(+)$1	245	173	189	14.6164
GGCGAUGAAUUACGAC	chr7:22862286-22862557(-)$1	271	14	30	12.5064
AUAAAUAAACAAUUAA	chr8:100890305-100890590(-)$1	285	192	208	13.5716
GUAGAAGGUGGACUGC	chr8:56986518-56986722(-)$1	204	177	193	13.4290
GCCCCCUUCCCCGGGC	chr7:100276510-100276822(+)$1	312	1	17	14.6164
AAGAUAUUUUUUUUUU	chr7:120897349-120897583(+)$1	234	210	226	14.6164
AGCGUCUACCCUCGCU	chr19:42364227-42364460(+)$1	233	14	30	14.6164
GCUUUCAAGGAUAGGC	chr11:5269494-5269750(-)$1	256	183	199	13.0270

#DB
((((........))))	chr6:31802691-31802931(+)$1	1	67	83	14.6164
((((........))))	chr16:2820994-2821290(+)$1	1	166	182	12.3297
.(((........))).	chr16:89627017-89627221(+)$1	1	80	96	13.5716
((((........))))	chr15:66797024-66797272(-)$1	1	211	227	12.3297
((((........))))	chr22:50010530-50010795(-)$1	1	159	175	14.6164
.(((........))).	chr3:6618484-6618792(+)$1	1	49	65	13.4253
.(((........)))(	chr3:128888890-128889156(-)$1	1	0	16	11.7688
((((........))))	chr11:62284754-62284997(-)$1	1	68	84	14.6164
(.((........)).)	chr1:24018199-24018420(+)$1	1	107	123	12.2602
((((........))))	chr7:120893672-120893897(+)$1	1	17	33	14.6164
(.((........)).)	chrX:73040703-73041036(-)$1	1	145	161	12.4556
((((........))).	chr14:102547810-102548056(-)$1	1	18	34	13.3921
((((........))).	chr8:125561925-125562192(+)$1	1	169	185	13.3142
.(((........))).	chr11:62295148-62295394(-)$1	1	173	189	13.3648
((((........))))	chr2:98263442-98263704(+)$1	1	58	74	13.4290
((((........))))	chr3:197677737-197677950(+)$1	1	13	29	13.4290
((((........))))	chr3:6624689-6624928(+)$1	1	157	173	13.0270
((((........))))	chr17:16345049-16345280(+)$1	1	199	215	14.6164
.(((........))).	chr7:97481363-97481592(-)$1	1	7	23	13.5716
((((........))))	chr11:63743619-63743889(+)$1	1	31	47	14.6164
((((........))))	chr5:1815930-1816181(+)$1	1	93	109	14.6164
((((........))))	chr12:56510457-56510660(+)$1	1	13	29	13.4290
((((........))))	chr11:60658390-60658661(-)$1	1	156	172	14.6164
((((........))))	chr7:75695655-75695895(+)$1	1	30	46	14.6164
((((........))))	chr8:101715361-101715584(-)$1	1	11	27	13.4290
((((........))))	chr7:119433521-119433786(-)$1	1	28	44	14.6164
.(((........))).	chr20:30488958-30489165(+)$1	1	175	191	13.5189
(.((........)).)	chr8:23429820-23430072(+)$1	1	34	50	12.5912
((((........))))	chr3:128888981-128889204(-)$1	1	77	93	14.6164
((((........))))	chr11:118279750-118279997(+)$1	1	170	186	13.0270
((((........))))	chr7:120887477-120887718(+)$1	1	28	44	13.4290
.(((........))))	chr11:5290583-5290801(-)$1	1	156	172	13.5665
(..(........)..)	chr16:1749181-1749427(+)$1	1	10	26	12.1940
((((........))))	chr17:56408159-56408411(-)$1	1	201	217	14.6164
((((........))))	chr7:120888892-120889166(+)$1	1	190	206	12.3297
((((........))))	chr17:4848897-4849130(-)$1	1	152	168	13.1464
((((........))))	chr6:33172048-33172289(+)$1	1	47	63	12.3297
((((........))))	chr11:62284850-62285088(-)$1	1	159	175	14.6164
((((........))))	chr11:5289673-5289907(-)$1	1	158	174	12.3297
((((........))))	chr12:56510331-56510544(+)$1	1	188	204	14.6164
((((........))))	chr5:132203079-132203289(+)$1	1	85	101	13.4290
(.((........)).)	chr6:147618261-147618534(+)$1	1	186	202	12.5912
((((........))))	chr4:56461337-56461565(-)$1	1	124	140	14.6164
((((........))))	chrX:153063812-153064048(+)$1	1	125	141	14.6164
((((........))))	chr11:75116557-75116775(+)$1	1	118	134	13.4290
((((........))))	chr15:20633134-20633420(-)$1	1	134	150	14.6164
((((........))))	chr19:18499666-18499931(+)$1	1	135	151	14.6164
((((........))))	chr7:120897012-120897290(+)$1	1	68	84	14.6164
((((........))))	chr1:165624532-165624788(+)$1	1	185	201	13.0270
(.((........))))	chr11:65622664-65622907(-)$1	1	139	155	11.9811
((((........))))	chr6:31694740-31694991(-)$1	1	151	167	14.6164
((((........))))	chr11:5274334-5274606(-)$1	1	135	151	14.6164
..((........))..	chr11:82869035-82869294(+)$1	1	46	62	12.4146
((((........))))	chr19:46190663-46190958(-)$1	1	36	52	14.6164
((((........))))	chr8:91269472-91269746(+)$1	1	149	165	13.4290
((((........))))	chr16:227341-227619(+)$1	1	193	209	14.6164
((((........))))	chr11:62294489-62294762(-)$1	1	55	71	14.6164
.(((........))))	chr11:63743695-63743954(+)$1	1	222	238	13.5801
((((........).))	chr11:67353784-67354049(+)$1	1	101	117	13.8662
((((........))))	chr19:4036787-4037032(+)$1	1	173	189	14.6164
((((........)).)	chr7:22862286-22862557(-)$1	1	14	30	12.5064
.(((........))).	chr8:100890305-100890590(-)$1	1	192	208	13.5716
((((........))))	chr8:56986518-56986722(-)$1	1	177	193	13.4290
((((........))))	chr7:100276510-100276822(+)$1	1	1	17	14.6164
((((........))))	chr7:120897349-120897583(+)$1	1	210	226	14.6164
((((........))))	chr19:42364227-42364460(+)$1	1	14	30	14.6164
((((........))))	chr11:5269494-5269750(-)$1	1	183	199	13.0270

#PSSM
d : 0.43	e : 0.17	f : 0.10	[ : 0.08	g : 0.05	c : 0.04	! : 0.02	" : 0.01	: : 0.01	= : 0.01	h : 0.01	
d : 0.43	c : 0.17	e : 0.13	f : 0.07	[ : 0.07	g : 0.05	! : 0.02	= : 0.01	
d : 0.43	c : 0.16	e : 0.13	b : 0.10	f : 0.07	g : 0.05	! : 0.01	= : 0.01	
d : 0.41	c : 0.16	e : 0.13	b : 0.10	f : 0.07	g : 0.05	a : 0.02	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.41	c : 0.16	e : 0.13	b : 0.10	f : 0.07	g : 0.05	a : 0.02	= : 0.01	
d : 0.41	c : 0.16	e : 0.13	b : 0.10	f : 0.07	g : 0.05	2 : 0.01	= : 0.01	] : 0.01	
d : 0.43	c : 0.16	e : 0.13	f : 0.07	] : 0.07	g : 0.05	2 : 0.01	= : 0.01	h : 0.01	3 : 0.01	
d : 0.43	e : 0.16	f : 0.10	g : 0.07	] : 0.05	c : 0.04	2 : 0.04	D : 0.01	4 : 0.01	= : 0.01	h : 0.01	3 : 0.01	

#score	916.5341413380285
#seq	67
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_UTR_m3_run2.txt

#BEAR
}GGGGGGGYYDDDD~~~~D	chr16:8953051-8953357(+)$1	306	199	218	12.1856
:FFFFFFFFFFFF}FFFFF	chr2:43451216-43451481(-)$1	265	209	228	8.7481
DGGGGGGG}BB}BBYYCCC	chr17:74380641-74380896(+)$1	255	163	182	12.5792
YHHHHHHHHBBYYJJJJJJ	chr2:202001724-202002101(+)$1	377	310	329	9.9495
}AGGGGGGGYYBB}DDDDD	chr14:105715428-105715730(-)$1	302	280	299	11.6344
:GGGGGGG}BBCCCYYCCC	chr4:1194934-1195174(-)$1	240	210	229	12.1804
CGGGGGGGFFFFFFDDDD}	chr2:242447563-242447868(-)$1	305	222	241	10.5779
CHHHHHHHHBB}A}EEEEE	chr10:77158319-77158575(-)$1	256	77	96	12.0939
:GGGGGGG}CCCBB}CCC}	chr14:105715317-105715582(-)$1	265	206	225	12.1584
}GGGGGGG~~~~CCCYYCC	chr10:105361199-105361490(-)$1	291	260	279	12.6157
HHHHHHHH}CCC}EEEEE:	chr3:195622690-195622959(-)$1	269	217	236	11.8647
}GGGGGGGBB}EEEEEAEE	chr8:38644660-38644927(+)$1	267	195	214	12.8677
YIIIIIIIII}DDDDCCCC	chr19:2270116-2270391(+)$1	275	252	271	8.9730
YGGGGGGGDDDDYYCCCZZ	chr9:134350717-134351007(+)$1	290	261	280	10.7194
HHHHHHKKCCCBBDDDDDD	chr16:89603556-89603783(+)$1	227	22	41	9.3465
}GGGGGGG}CCC}FFFFFF	chr22:31741781-31742046(-)$1	265	240	259	12.3748
GGGGGGG}CCCBBZZZEEE	chr7:1130971-1131222(-)$1	251	214	233	10.7773
YGGGGGGG}CCC}A}BB}G	chr2:200323325-200323593(-)$1	268	197	216	12.1698
:FFFFFFYYDDDD}EEEEE	chr8:144678729-144678998(-)$1	269	242	261	9.4671
:GGGGGGG}DDDD}AGGGG	chr19:1205685-1205975(+)$1	290	266	285	9.9543
HHHHHHHH}CCCIIIIIII	chr8:144670906-144671156(-)$1	250	226	245	9.8036
:HHHHHHHHDDDDYYBBZZ	chr17:66538068-66538348(+)$1	280	254	273	10.0431
HHHHHHHH}BB?????EEE	chr11:849872-850131(+)$1	259	202	221	10.4843
}GGGGGGG~~~~DDDD}II	chr4:1229650-1229936(-)$1	286	227	246	12.4035
}GGGGGGG}CCC}CCCHHH	chr19:42758633-42758902(-)$1	269	245	264	11.4890
HHHHHHHYYDDDD}AYYFF	chr16:89346582-89346830(-)$1	248	222	241	10.2852
HHHHHHHA}CCCZZZEEEE	chr13:45150564-45150891(-)$1	327	272	291	11.3213
}GGGGGGGCCC}DDDDYYC	chr19:1911810-1912102(+)$1	292	244	263	11.9178
~GGGGGGGZZZEEEEEFFF	chr2:202001629-202001900(+)$1	271	245	264	12.3447
BGGGGGGG}BBCCCFFFFF	chr7:1132623-1132884(-)$1	261	116	135	12.2132
}GGGGGGG}BBZZZBBYYC	chr16:87736814-87737083(-)$1	269	248	267	12.8868
YYHHHHHHHH}BB}DDDD}	chr19:59074102-59074382(+)$1	280	251	270	10.4923
DDFFFFFFZZZBBEEEEE}	chr12:104697337-104697643(+)$1	306	216	235	10.3376
YFFFFFF}BB}BB}DDDDG	chr19:1206004-1206293(+)$1	289	128	147	10.3641
IIIIIIICCC}BB}DDDD:	chr14:105707731-105707991(-)$1	260	180	199	8.9259
HHHHHHHH~~~~BBYYFFF	chr17:77914435-77914693(-)$1	258	234	253	12.2266
::FFFFFFZZZBB}DDDD@	chr1:182359846-182360105(-)$1	259	139	158	9.4172
CIIIIIIIIIYYFFFFFF:	chr17:80192375-80192680(+)$1	305	280	299	8.6574
:GGGGGGGZZZBB}CCC::	chr16:75297695-75297952(-)$1	257	81	100	11.1068
::IIIIIIIIIBBEEEEEB	chr22:45724716-45724979(+)$1	263	240	259	8.6956
E}GGGGGGGA}EEEEE:::	chr16:8941585-8941855(+)$1	270	235	254	9.8975
C}FFFFFF~~~~DDDD}DD	chr15:43662878-43663210(-)$1	332	302	321	10.2167
HHHHHHHH}AYYDDDD~~~	chr3:128211691-128211981(+)$1	290	205	224	11.9598
FFFFFFFFFDDDD}DDDDD	chr16:24801582-24801828(+)$1	246	209	228	9.4178
_GGGGGGGBBDDDDYYHHH	chr17:74380190-74380435(+)$1	245	214	233	10.9236
YYFFFFFF}EEEEEFFFFF	chr9:134350650-134350917(+)$1	267	219	238	9.6967
YYFFFFFFYYEEEEECCC}	chr14:59931821-59932119(-)$1	298	254	273	9.8708
fGGGGGGG}BBYYCCC}CC	chr6:1312808-1313077(+)$1	269	216	235	11.3702
_GGGGGGG}EEEEE}DDDD	chr14:105715205-105715474(-)$1	269	221	240	11.9734
C}HHHHHHHHEEEEEYYBB	chr8:144671306-144671634(-)$1	328	190	209	10.3231
YGGGGGGGCCC~~~~CCC}	chr19:13263725-13264008(+)$1	283	247	266	12.6087
:GGGGGGG~~~~FFFFFF:	chr17:80109767-80110031(-)$1	264	104	123	11.4177
::FFFFFFCCCYYEEEEE}	chr7:1132503-1132744(-)$1	241	124	143	10.1681

#otherMatches

#Seq PSSM
ACCCCCAUGUCCACGUCUG	chr16:8953051-8953357(+)$1	306	199	218	12.1856
UUCGGUUUCCUCUUGUCuu	chr2:43451216-43451481(-)$1	265	209	228	8.7481
CUGAGCUUGGGACGAGCUG	chr17:74380641-74380896(+)$1	255	163	182	12.5792
GCCCAGGGAGCAGUCCUGA	chr2:202001724-202002101(+)$1	377	310	329	9.9495
gcgcgggggccgcggggcA	chr14:105715428-105715730(-)$1	302	280	299	11.6344
ACUGGGGCACCUGCAUUUG	chr4:1194934-1195174(-)$1	240	210	229	12.1804
UCUCCUGGGCCCCCCCCCA	chr2:242447563-242447868(-)$1	305	222	241	10.5779
gggagggcgagcgagggag	chr10:77158319-77158575(-)$1	256	77	96	12.0939
GGUGGUUGUUGCCGAGUGU	chr14:105715317-105715582(-)$1	265	206	225	12.1584
GUGCCUUUGCUACAGAUCU	chr10:105361199-105361490(-)$1	291	260	279	12.6157
CAGAGUGGCCGCCGGGGCA	chr3:195622690-195622959(-)$1	269	217	236	11.8647
AGCCCGGCGCGGGGCCCGC	chr8:38644660-38644927(+)$1	267	195	214	12.8677
UGUUGCCUCGAUGUGGCCC	chr19:2270116-2270391(+)$1	275	252	271	8.9730
AACGGGAAUGAAGGCUCGC	chr9:134350717-134351007(+)$1	290	261	280	10.7194
ACAGGAUAGGGCCGACGCU	chr16:89603556-89603783(+)$1	227	22	41	9.3465
CGGGGGUUGGCUAUGUGGG	chr22:31741781-31742046(-)$1	265	240	259	12.3748
GAGUGGCCCCAGCUUUGGG	chr7:1130971-1131222(-)$1	251	214	233	10.7773
GUCGCCUCUUGCGCGUCGG	chr2:200323325-200323593(-)$1	268	197	216	12.1698
CACUGCCUGCGGCUCACCU	chr8:144678729-144678998(-)$1	269	242	261	9.4671
ggcgagggggacgcgccgc	chr19:1205685-1205975(+)$1	290	266	285	9.9543
GGGCAGGGAAGGGCUCAGC	chr8:144670906-144671156(-)$1	250	226	245	9.8036
AGAGAGGAGGAGUAAGUGG	chr17:66538068-66538348(+)$1	280	254	273	10.0431
CUCCGGAGGGCAAGGAGCC	chr11:849872-850131(+)$1	259	202	221	10.4843
AUCUGGAUUUUUGGGGACC	chr4:1229650-1229936(-)$1	286	227	246	12.4035
GGAGGGCGUGAGUGGGGAG	chr19:42758633-42758902(-)$1	269	245	264	11.4890
GGUGGAGCCGGUGCCCUGG	chr16:89346582-89346830(-)$1	248	222	241	10.2852
ACGCGGCGGGAGGAGGGGG	chr13:45150564-45150891(-)$1	327	272	291	11.3213
CUGCUCCCGUCUCUGUCUC	chr19:1911810-1912102(+)$1	292	244	263	11.9178
GCUGGGGACAGGGAGGUGC	chr2:202001629-202001900(+)$1	271	245	264	12.3447
CUGGGUGACAGGCUGGUCA	chr7:1132623-1132884(-)$1	261	116	135	12.2132
CCCGGGGACGCCAUGGAAC	chr16:87736814-87737083(-)$1	269	248	267	12.8868
AUGCUCUUCCAGGCGCGCG	chr19:59074102-59074382(+)$1	280	251	270	10.4923
CCACACGCUGGGAGGGCCG	chr12:104697337-104697643(+)$1	306	216	235	10.3376
GGGGGGCGCCUGCCGGGCC	chr19:1206004-1206293(+)$1	289	128	147	10.3641
CCGCCUGUGCACGUGCCAU	chr14:105707731-105707991(-)$1	260	180	199	8.9259
CCCAGAGGAAAGUCAGCUC	chr17:77914435-77914693(-)$1	258	234	253	12.2266
AAGUCCACGAAGAAAGCAA	chr1:182359846-182360105(-)$1	259	139	158	9.4172
GGGGGACCCACCGGGUCAG	chr17:80192375-80192680(+)$1	305	280	299	8.6574
CGUGGCUGGCUGGCAGAUC	chr16:75297695-75297952(-)$1	257	81	100	11.1068
agcaccucccaccaggccc	chr22:45724716-45724979(+)$1	263	240	259	8.6956
CUGGACUUCCACCUCCAGU	chr16:8941585-8941855(+)$1	270	235	254	9.8975
CUCUGGCCGACACCCGAGC	chr15:43662878-43663210(-)$1	332	302	321	10.2167
GUGUUCAGCGGACCGCUUU	chr3:128211691-128211981(+)$1	290	205	224	11.9598
CUAAUUUACCCAGCGUUGA	chr16:24801582-24801828(+)$1	246	209	228	9.4178
CUGCGCUCGCGGCCGGGCC	chr17:74380190-74380435(+)$1	245	214	233	10.9236
AGAGGACUGCCCCAGAGCC	chr9:134350650-134350917(+)$1	267	219	238	9.6967
CCGGCCCACCUGGCGGGAC	chr14:59931821-59932119(-)$1	298	254	273	9.8708
CGUCCCCGCUGUCGGCGGC	chr6:1312808-1313077(+)$1	269	216	235	11.3702
GGUCCGCGGCCGCGGCGCU	chr14:105715205-105715474(-)$1	269	221	240	11.9734
GGUGCCCGGCGGGGCCGCA	chr8:144671306-144671634(-)$1	328	190	209	10.3231
CCCCCGCCGCUGUCGCCGU	chr19:13263725-13264008(+)$1	283	247	266	12.6087
GGGGAGGAGGCGGAGGGCU	chr17:80109767-80110031(-)$1	264	104	123	11.4177
AGGCCCCGAGGAGCCAGAA	chr7:1132503-1132744(-)$1	241	124	143	10.1681

#DB
.)))))))..))))....)	chr16:8953051-8953357(+)$1	1	199	218	12.1856
.)))))))))))).)))))	chr2:43451216-43451481(-)$1	1	209	228	8.7481
)))))))).)).))..)))	chr17:74380641-74380896(+)$1	1	163	182	12.5792
.))))))))))..))))))	chr2:202001724-202002101(+)$1	1	310	329	9.9495
.))))))))..)).)))))	chr14:105715428-105715730(-)$1	1	280	299	11.6344
.))))))).)))))..)))	chr4:1194934-1195174(-)$1	1	210	229	12.1804
)))))))))))))))))).	chr2:242447563-242447868(-)$1	1	222	241	10.5779
))))))))))).).)))))	chr10:77158319-77158575(-)$1	1	77	96	12.0939
.))))))).))))).))).	chr14:105715317-105715582(-)$1	1	206	225	12.1584
.)))))))....)))..))	chr10:105361199-105361490(-)$1	1	260	279	12.6157
)))))))).))).))))).	chr3:195622690-195622959(-)$1	1	217	236	11.8647
.))))))))).))))))))	chr8:38644660-38644927(+)$1	1	195	214	12.8677
.))))))))).))))))))	chr19:2270116-2270391(+)$1	1	252	271	8.9730
.)))))))))))..)))..	chr9:134350717-134351007(+)$1	1	261	280	10.7194
((((((..(((((((((((	chr16:89603556-89603783(+)$1	1	22	41	9.3465
.))))))).))).))))))	chr22:31741781-31742046(-)$1	1	240	259	12.3748
))))))).)))))...)))	chr7:1130971-1131222(-)$1	1	214	233	10.7773
.))))))).))).).)).)	chr2:200323325-200323593(-)$1	1	197	216	12.1698
.))))))..)))).)))))	chr8:144678729-144678998(-)$1	1	242	261	9.4671
.))))))).)))).)))))	chr19:1205685-1205975(+)$1	1	266	285	9.9543
)))))))).))))))))))	chr8:144670906-144671156(-)$1	1	226	245	9.8036
.))))))))))))..))..	chr17:66538068-66538348(+)$1	1	254	273	10.0431
)))))))).)).....)))	chr11:849872-850131(+)$1	1	202	221	10.4843
.)))))))....)))).))	chr4:1229650-1229936(-)$1	1	227	246	12.4035
.))))))).))).))))))	chr19:42758633-42758902(-)$1	1	245	264	11.4890
)))))))..)))).)..))	chr16:89346582-89346830(-)$1	1	222	241	10.2852
)))))))).)))...))))	chr13:45150564-45150891(-)$1	1	272	291	11.3213
.)))))))))).))))..)	chr19:1911810-1912102(+)$1	1	244	263	11.9178
.)))))))...))))))))	chr2:202001629-202001900(+)$1	1	245	264	12.3447
)))))))).)))))(((((	chr7:1132623-1132884(-)$1	1	116	135	12.2132
.))))))).))...))..)	chr16:87736814-87737083(-)$1	1	248	267	12.8868
..)))))))).)).)))).	chr19:59074102-59074382(+)$1	1	251	270	10.4923
))))))))...))))))).	chr12:104697337-104697643(+)$1	1	216	235	10.3376
.)))))).)).)).)))))	chr19:1206004-1206293(+)$1	1	128	147	10.3641
)))))))))).)).)))).	chr14:105707731-105707991(-)$1	1	180	199	8.9259
))))))))....))..)))	chr17:77914435-77914693(-)$1	1	234	253	12.2266
..))))))...)).)))).	chr1:182359846-182360105(-)$1	1	139	158	9.4172
))))))))))..)))))).	chr17:80192375-80192680(+)$1	1	280	299	8.6574
.)))))))...)).)))..	chr16:75297695-75297952(-)$1	1	81	100	11.1068
..)))))))))))))))))	chr22:45724716-45724979(+)$1	1	240	259	8.6956
).)))))))).)))))...	chr16:8941585-8941855(+)$1	1	235	254	9.8975
).))))))....)))).))	chr15:43662878-43663210(-)$1	1	302	321	10.2167
)))))))).)..))))...	chr3:128211691-128211981(+)$1	1	205	224	11.9598
))))))))))))).)))))	chr16:24801582-24801828(+)$1	1	209	228	9.4178
.)))))))))))))..)))	chr17:74380190-74380435(+)$1	1	214	233	10.9236
..)))))).))))))))))	chr9:134350650-134350917(+)$1	1	219	238	9.6967
..))))))..)))))))).	chr14:59931821-59932119(-)$1	1	254	273	9.8708
)))))))).))..))).))	chr6:1312808-1313077(+)$1	1	216	235	11.3702
.))))))).))))).))))	chr14:105715205-105715474(-)$1	1	221	240	11.9734
).)))))))))))))..))	chr8:144671306-144671634(-)$1	1	190	209	10.3231
.))))))))))....))).	chr19:13263725-13264008(+)$1	1	247	266	12.6087
.)))))))....)))))).	chr17:80109767-80110031(-)$1	1	104	123	11.4177
..)))))))))..))))).	chr7:1132503-1132744(-)$1	1	124	143	10.1681

#PSSM
: : 0.20	} : 0.16	Y : 0.16	H : 0.15	C : 0.09	D : 0.03	_ : 0.03	G : 0.01	~ : 0.01	B : 0.01	I : 0.01	E : 0.01	F : 0.01	f : 0.01	
G : 0.45	H : 0.20	F : 0.07	I : 0.05	Y : 0.05	: : 0.05	} : 0.05	A : 0.01	D : 0.01	
G : 0.49	H : 0.24	F : 0.18	I : 0.07	
G : 0.49	H : 0.24	F : 0.18	I : 0.07	
G : 0.49	H : 0.24	F : 0.18	I : 0.07	
G : 0.49	H : 0.24	F : 0.18	I : 0.07	
G : 0.49	H : 0.22	F : 0.18	I : 0.07	K : 0.01	
G : 0.47	H : 0.18	F : 0.15	I : 0.05	} : 0.03	Y : 0.03	K : 0.01	A : 0.01	C : 0.01	
} : 0.32	C : 0.11	H : 0.09	~ : 0.09	Y : 0.07	Z : 0.07	F : 0.05	B : 0.05	I : 0.05	G : 0.03	D : 0.01	
C : 0.24	B : 0.20	D : 0.11	~ : 0.09	Z : 0.07	Y : 0.05	I : 0.05	F : 0.03	H : 0.03	A : 0.03	E : 0.03	
C : 0.22	D : 0.15	B : 0.15	} : 0.11	~ : 0.09	Z : 0.07	E : 0.07	Y : 0.05	F : 0.03	I : 0.01	
B : 0.18	D : 0.16	C : 0.16	E : 0.13	~ : 0.11	Y : 0.09	} : 0.05	F : 0.03	? : 0.01	Z : 0.01	
B : 0.24	D : 0.22	E : 0.13	F : 0.07	Y : 0.07	} : 0.07	C : 0.05	Z : 0.03	A : 0.01	I : 0.01	? : 0.01	~ : 0.01	
} : 0.22	E : 0.20	D : 0.15	C : 0.09	F : 0.07	B : 0.05	Z : 0.05	Y : 0.03	J : 0.01	A : 0.01	I : 0.01	? : 0.01	~ : 0.01	
D : 0.24	E : 0.20	F : 0.11	Y : 0.09	C : 0.09	} : 0.05	~ : 0.03	Z : 0.03	A : 0.03	J : 0.01	I : 0.01	? : 0.01	B : 0.01	
D : 0.24	E : 0.18	C : 0.15	Y : 0.13	F : 0.11	B : 0.05	~ : 0.01	J : 0.01	Z : 0.01	G : 0.01	I : 0.01	? : 0.01	
D : 0.16	E : 0.16	F : 0.15	C : 0.15	Y : 0.09	} : 0.05	~ : 0.03	B : 0.03	H : 0.03	J : 0.01	A : 0.01	G : 0.01	I : 0.01	: : 0.01	
D : 0.18	E : 0.18	F : 0.16	C : 0.15	~ : 0.03	Z : 0.03	I : 0.03	H : 0.03	Y : 0.03	: : 0.03	J : 0.01	} : 0.01	G : 0.01	B : 0.01	
F : 0.13	C : 0.13	} : 0.13	D : 0.11	E : 0.11	: : 0.11	G : 0.05	Z : 0.03	I : 0.03	H : 0.03	B : 0.03	J : 0.01	@ : 0.01	~ : 0.01	

#score	578.5005051927152
#seq	53
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_transcript_m1_run2.txt

#BEAR
[eeeeevvvvvvvvvvvvveeee	chr5:138253457-138253687(+)$1	230	39	62	21.7788
iiiiiiiitttttttttttiiii	chr8:124392675-124392943(-)$1	268	213	236	19.7508
""ddddxxxxxxxxxxxxxxxdd	chr1:708371-708588(-)$1	217	48	71	18.3789
bb[cccuuuuuuuuuuuucccbb	chr1:155646241-155646523(-)$1	282	88	111	22.2738
ff[bbxxxxxxxxxxxxxxxbb]	chr1:245019199-245019460(-)$1	261	60	83	18.2483
bb[bbwwwwwwwwwwwwwwbb]b	chr15:23311557-23311834(-)$1	277	44	67	20.7627
ggggggguuuuuuuuuuuugggg	chr4:40144229-40144537(+)$1	308	263	286	21.8448
""ddddxxxxxxxxxxxxxxxdd	chr22:42608119-42608376(-)$1	257	160	183	18.3789
iiicccvvvvvvvvvvvvvccc]	chr12:12982299-12982575(+)$1	276	49	72	22.4037
ggggggtttttttttttgggggg	chr5:39021061-39021338(-)$1	277	210	233	19.9067
cc[cccwwwwwwwwwwwwwwccc	chr4:667603-667855(-)$1	252	77	100	22.5043
b!!eeeeettttttttttteeee	chr1:39760619-39760870(+)$1	251	43	66	20.2748
(((bbyyyyyyyyyyyyyyyybb	chr3:196792044-196792315(-)$1	271	165	188	19.9390
feeeeeyyyyyyyyyyyyyyyye	chr3:125223366-125223636(-)$1	270	218	241	22.2987
bb[bbyyyyyyyyyyyyyyyybb	chr14:24769551-24769853(+)$1	302	45	68	21.7876
ee!!cccuuuuuuuuuuuuccc]	chr9:123312968-123313179(-)$1	211	90	113	22.7434
ggggggwwwwwwwwwwwwwwggg	chr17:38285776-38286034(+)$1	258	100	123	21.8631
ffffffuuuuuuuuuuuufffff	chr13:76397747-76398048(+)$1	301	52	75	21.2682
[eeeeeyyyyyyyyyyyyyyyye	chr14:69375992-69376213(-)$1	221	72	95	22.4330
ffffffuuuuuuuuuuuufffff	chr14:21681048-21681360(-)$1	312	237	260	21.2682
hhhhhhvvvvvvvvvvvvvhhhh	chr14:31585405-31585667(-)$1	262	99	122	19.9036
cccyyyyyyyyyyyyyyyyccc:	chr15:44085809-44086055(+)$1	246	4	27	20.3088
[eeeeewwwwwwwwwwwwwweee	chr11:57102498-57102746(-)$1	248	43	66	21.7513
!!ddddvvvvvvvvvvvvvdddd	chr1:94016436-94016704(+)$1	268	4	27	21.7263
eeeeewwwwwwwwwwwwwweeee	chr1:214170177-214170521(+)$1	344	74	97	21.0887
[eeeeeyyyyyyyyyyyyyyyye	chr1:22835569-22835826(+)$1	257	159	182	22.4330
eeeee[bbtttttttttttbb]e	chr6:155579064-155579319(-)$1	255	151	174	19.5966
e"""ddddtttttttttttdddd	chr16:70296177-70296401(-)$1	224	42	65	20.0939
###bbxxxxxxxxxxxxxxxbb3	chr17:65821739-65822026(+)$1	287	72	95	18.2466
bb!!awwwwwwwwwwwwwwa22b	chr16:72136950-72137167(+)$1	217	48	71	20.9857
fffffftttttttttttffffff	chr10:102142359-102142680(+)$1	321	242	265	19.3914
bb[cccuuuuuuuuuuuucccbb	chr8:48625481-48625740(+)$1	259	66	89	22.2738
eeeeewwwwwwwwwwwwwweeee	chr9:139702006-139702262(+)$1	256	62	85	21.0887
fffeeeeettttttttttteeee	chr20:39766148-39766369(+)$1	221	136	159	19.8433
ff[ccctttttttttttcccfff	chr17:7480611-7480836(+)$1	225	31	54	20.9472
[cccbbvvvvvvvvvvvvvbb]c	chr21:34921911-34922163(+)$1	252	154	177	21.5654
f!!cccwwwwwwwwwwwwwwccc	chr12:123006588-123006930(-)$1	342	135	158	22.6690
d!!cccyyyyyyyyyyyyyyyyc	chr18:60217482-60217827(+)$1	345	177	200	22.9917
dd[ccctttttttttttccc]dd	chr11:17153392-17153667(-)$1	275	123	146	20.7706
========ttttttttttt====	chr12:81648543-81648798(+)$1	255	117	140	20.2974
ddd[bbvvvvvvvvvvvvvbb]d	chr4:7062747-7063035(-)$1	288	30	53	20.9691
dd[dddduuuuuuuuuuuudddd	chr15:72810306-72810566(+)$1	260	139	162	21.8348
ff[cccvvvvvvvvvvvvvcccf	chr17:8445325-8445562(-)$1	237	160	183	22.6351
[eeeeeauuuuuuuuuuuua]ee	chr9:90314958-90315210(+)$1	252	161	184	22.5865
$$$$bbvvvvvvvvvvvvvbb55	chr19:11170362-11170600(+)$1	238	103	126	19.2568
"a[dddduuuuuuuuuuuudddd	chr7:99936373-99936614(+)$1	241	116	139	22.1924
beeeeeuuuuuuuuuuuueeeee	chr16:72130775-72131009(+)$1	234	62	85	21.5613
###cccuuuuuuuuuuuuccc44	chr12:123780316-123780595(-)$1	279	28	51	22.8377
f!!cccvvvvvvvvvvvvvcccf	chr21:47647443-47647699(-)$1	256	147	170	22.8014
ffffffwwwwwwwwwwwwwwfff	chr11:2999419-2999638(-)$1	219	32	55	21.2670
dd[ddddtttttttttttdddd]	chr2:170663420-170663654(+)$1	234	142	165	20.2714
"""cccyyyyyyyyyyyyyyyyc	chr1:93575723-93575983(+)$1	260	159	182	23.0468
cc[cccuuuuuuuuuuuuccccc	chr11:122931288-122931525(-)$1	237	184	207	22.9604
gg[dddduuuuuuuuuuuudddd	chr1:46125759-46126028(-)$1	269	225	248	22.1870
fff[bbtttttttttttbb333f	chr14:21969092-21969335(-)$1	243	191	214	19.8328
####bbyyyyyyyyyyyyyyyyb	chr14:62204784-62205094(+)$1	310	117	140	22.2867
[eeeeeyyyyyyyyyyyyyyyye	chr20:30149411-30149660(+)$1	249	5	28	22.4330
g!!bb[auuuuuuuuuuuua]bb	chr2:240954028-240954355(-)$1	327	113	136	22.5373
ggggggtttttttttttgggggg	chr2:228337085-228337333(+)$1	248	102	125	19.9067
ffffffyyyyyyyyyyyyyyyyf	chr19:17430247-17430570(+)$1	323	56	79	22.0439
d"""ddddtttttttttttdddd	chr19:49518973-49519216(+)$1	243	5	28	20.0407
ggggggtttttttttttgggggg	chr12:133235826-133236124(-)$1	298	69	92	19.9067
hh[cccwwwwwwwwwwwwwwccc	chr2:170402734-170403064(-)$1	330	214	237	22.1418
F:ddddvvvvvvvvvvvvvdddd	chr21:44324176-44324478(+)$1	302	15	38	20.0898
fffffftttttttttttffffff	chrX:70517690-70517948(+)$1	258	14	37	19.3914
dd[cccxxxxxxxxxxxxxxxcc	chr8:133806880-133807161(+)$1	281	132	155	18.9214
d!!dddduuuuuuuuuuuudddd	chr17:65960231-65960483(+)$1	252	89	112	22.0959
cc!!bbwwwwwwwwwwwwwwbb2	chr10:120816197-120816435(-)$1	238	132	155	21.4341

#otherMatches

#Seq PSSM
CUUUUUAAAGAACAAUGGGAAAA	chr5:138253457-138253687(+)$1	230	39	62	21.7788
UAAAGCAGUAAUUUAGGAUUUGC	chr8:124392675-124392943(-)$1	268	213	236	19.7508
UCAGGCUGCUCGCUGUUCACUGC	chr1:708371-708588(-)$1	217	48	71	18.3789
GGAGGUAGAGAAGGUUAAACCCC	chr1:155646241-155646523(-)$1	282	88	111	22.2738
AGAAGGAAGAAGCCCAAAAACUC	chr1:245019199-245019460(-)$1	261	60	83	18.2483
CCACCCACAGCAGCACACUGGCG	chr15:23311557-23311834(-)$1	277	44	67	20.7627
AACUGAUUAUAUAUUUUUUGUCA	chr4:40144229-40144537(+)$1	308	263	286	21.8448
CAUGAAUCCACACAUGACCUUUU	chr22:42608119-42608376(-)$1	257	160	183	18.3789
UCUUGCAGGAGUUAAGGGAGCAU	chr12:12982299-12982575(+)$1	276	49	72	22.4037
AAUUUUUAUUAUUGUCUAAAAUU	chr5:39021061-39021338(-)$1	277	210	233	19.9067
CCUCUGACCAACCUCUUUCGCAG	chr4:667603-667855(-)$1	252	77	100	22.5043
AUCCGCUCCCCACUGCCAAGAGU	chr1:39760619-39760870(+)$1	251	43	66	20.2748
AAAGGUAAGCAUCAGACUAAUCC	chr3:196792044-196792315(-)$1	271	165	188	19.9390
GAUAGCUAUUGAUGCAGACUCUG	chr3:125223366-125223636(-)$1	270	218	241	22.2987
CUUUCUUCCCUUUUCAGAUCUGA	chr14:24769551-24769853(+)$1	302	45	68	21.7876
CUGAACAUAUCUACAAAACUGUG	chr9:123312968-123313179(-)$1	211	90	113	22.7434
GCAAGUAAGGCAUAGAGAACACU	chr17:38285776-38286034(+)$1	258	100	123	21.8631
CUGGCUUCAAGCUUAUCUAGCCA	chr13:76397747-76398048(+)$1	301	52	75	21.2682
CUGCUCCUUCUUCUCUCUCCCCG	chr14:69375992-69376213(-)$1	221	72	95	22.4330
AAAGUGUAUGUAUUAUUUCAUUU	chr14:21681048-21681360(-)$1	312	237	260	21.2682
AAGUUGAAUUACCACUCACCAAU	chr14:31585405-31585667(-)$1	262	99	122	19.9036
CACUUCCAUCUUAUCCUUUGUGC	chr15:44085809-44086055(+)$1	246	4	27	20.3088
GCUGAGCAUCCGCACACCCACUC	chr11:57102498-57102746(-)$1	248	43	66	21.7513
AUUAGUAACUUUAAAAAAAAUUA	chr1:94016436-94016704(+)$1	268	4	27	21.7263
AGGAGGAUAUAUGCAGCAACUCU	chr1:214170177-214170521(+)$1	344	74	97	21.0887
GUGGUGGGAAUAAAAAGCGAAAU	chr1:22835569-22835826(+)$1	257	159	182	22.4330
AGAGUUGGCAGACAUAGACCCUA	chr6:155579064-155579319(-)$1	255	151	174	19.5966
ACAGGCCAGGAGUGUGGAGUGGU	chr16:70296177-70296401(-)$1	224	42	65	20.0939
uuuccuucuccccccgccucgGC	chr17:65821739-65822026(+)$1	287	72	95	18.2466
UGAAGAGAAAGAGCGAAGCCAGC	chr16:72136950-72137167(+)$1	217	48	71	20.9857
UGGUGAACACAACACUCUCACUA	chr10:102142359-102142680(+)$1	321	242	265	19.3914
GGAGCCCAUCACAGACAUGGCCC	chr8:48625481-48625740(+)$1	259	66	89	22.2738
GCGCCGAGAUCAAGAGGCAGGCG	chr9:139702006-139702262(+)$1	256	62	85	21.0887
GCGGGCGCCGCGUCCCCUUGCGC	chr20:39766148-39766369(+)$1	221	136	159	19.8433
UGGCCUUUUUUUCCACUAGGUAG	chr17:7480611-7480836(+)$1	225	31	54	20.9472
UCUGAGACCAAUGAAUCCCCUGC	chr21:34921911-34922163(+)$1	252	154	177	21.5654
AGAGAUAAGAAAAAAGAGCAGUC	chr12:123006588-123006930(-)$1	342	135	158	22.6690
AACGGCGACAUCCUGACCUAGAG	chr18:60217482-60217827(+)$1	345	177	200	22.9917
GAAAGGAUCUUUUUAAACCUAUU	chr11:17153392-17153667(-)$1	275	123	146	20.7706
GCAUUUUUGGCCACGUAGAAGAA	chr12:81648543-81648798(+)$1	255	117	140	20.2974
CAGUGCUCAGUUUGGAAUUGCCC	chr4:7062747-7063035(-)$1	288	30	53	20.9691
CAAUUGGGAUAAAGAGAAGCUAA	chr15:72810306-72810566(+)$1	260	139	162	21.8348
UGUCUUUCAUUUUCCACUCAAGC	chr17:8445325-8445562(-)$1	237	160	183	22.6351
CAUCUGCAAGAAAUACGAAGCCA	chr9:90314958-90315210(+)$1	252	161	184	22.5865
CCAGCGUGCGGCAGAAAAUCgag	chr19:11170362-11170600(+)$1	238	103	126	19.2568
AAGCUGCCAAAAGUGACAUGCAG	chr7:99936373-99936614(+)$1	241	116	139	22.1924
GUCCAAAGAAGAAAAGGAUUGGA	chr16:72130775-72131009(+)$1	234	62	85	21.5613
CUCUUGUAAAUCUCCUAUCAACU	chr12:123780316-123780595(-)$1	279	28	51	22.8377
UGAACGGGAUGACAUUUUACGUG	chr21:47647443-47647699(-)$1	256	147	170	22.8014
ACAGUAAUACUUUUUAAACAUAC	chr11:2999419-2999638(-)$1	219	32	55	21.2670
ACCUGCUAAUACUUUUCAAGUAA	chr2:170663420-170663654(+)$1	234	142	165	20.2714
GGAUGGACAUAAAGCCAAAAAGC	chr1:93575723-93575983(+)$1	260	159	182	23.0468
UGACAAAGAUGAAGGAAAUUGCA	chr11:122931288-122931525(-)$1	237	184	207	22.9604
CAUGAAAAAUACCGACUGCUUUC	chr1:46125759-46126028(-)$1	269	225	248	22.1870
GGCAGCAAAGACCACACGCCAAG	chr14:21969092-21969335(-)$1	243	191	214	19.8328
AAUGUCUCCAUUACCCACCGCUG	chr14:62204784-62205094(+)$1	310	117	140	22.2867
UCUUCACACCUUCCCUGCAGCUU	chr20:30149411-30149660(+)$1	249	5	28	22.4330
AUCUGCGAUUACCUGCCCCCCCA	chr2:240954028-240954355(-)$1	327	113	136	22.5373
GCGGGACAUGACCGGCCUCCCGC	chr2:228337085-228337333(+)$1	248	102	125	19.9067
ggcugUCCGAAAAAAAAGACUCA	chr19:17430247-17430570(+)$1	323	56	79	22.0439
CCAACCUCAGAGGGAGGAAGAGG	chr19:49518973-49519216(+)$1	243	5	28	20.0407
CUGAGAACCGUUCCAUGUCUCGG	chr12:133235826-133236124(-)$1	298	69	92	19.9067
UUCAUGGAUGAUAUUAAUUACAU	chr2:170402734-170403064(-)$1	330	214	237	22.1418
CGCAGGGAAUAGAAGGCCACCUG	chr21:44324176-44324478(+)$1	302	15	38	20.0898
CGCCGUGAAGAAGAGAUGCGGCG	chrX:70517690-70517948(+)$1	258	14	37	19.3914
GGACAGACUGUCGCUAUUACCCU	chr8:133806880-133807161(+)$1	281	132	155	18.9214
CUUGCAGAUUUUAUAUUGGCUGU	chr17:65960231-65960483(+)$1	252	89	112	22.0959
GGAACAGAGAAUUAAAGACAUGG	chr10:120816197-120816435(-)$1	238	132	155	21.4341

#DB
.(((((.............))))	chr5:138253457-138253687(+)$1	1	39	62	21.7788
((((((((...........))))	chr8:124392675-124392943(-)$1	1	213	236	19.7508
..((((...............))	chr1:708371-708588(-)$1	1	48	71	18.3789
((.(((............)))))	chr1:155646241-155646523(-)$1	1	88	111	22.2738
((.((...............)).	chr1:245019199-245019460(-)$1	1	60	83	18.2483
((.((..............)).)	chr15:23311557-23311834(-)$1	1	44	67	20.7627
(((((((............))))	chr4:40144229-40144537(+)$1	1	263	286	21.8448
..((((...............))	chr22:42608119-42608376(-)$1	1	160	183	18.3789
((((((.............))).	chr12:12982299-12982575(+)$1	1	49	72	22.4037
((((((...........))))))	chr5:39021061-39021338(-)$1	1	210	233	19.9067
((.(((..............)))	chr4:667603-667855(-)$1	1	77	100	22.5043
(..(((((...........))))	chr1:39760619-39760870(+)$1	1	43	66	20.2748
...((................))	chr3:196792044-196792315(-)$1	1	165	188	19.9390
)(((((................)	chr3:125223366-125223636(-)$1	1	218	241	22.2987
((.((................))	chr14:24769551-24769853(+)$1	1	45	68	21.7876
((..(((............))).	chr9:123312968-123313179(-)$1	1	90	113	22.7434
((((((..............)))	chr17:38285776-38286034(+)$1	1	100	123	21.8631
((((((............)))))	chr13:76397747-76398048(+)$1	1	52	75	21.2682
.(((((................)	chr14:69375992-69376213(-)$1	1	72	95	22.4330
((((((............)))))	chr14:21681048-21681360(-)$1	1	237	260	21.2682
((((((.............))))	chr14:31585405-31585667(-)$1	1	99	122	19.9036
(((................))).	chr15:44085809-44086055(+)$1	1	4	27	20.3088
.(((((..............)))	chr11:57102498-57102746(-)$1	1	43	66	21.7513
..((((.............))))	chr1:94016436-94016704(+)$1	1	4	27	21.7263
(((((..............))))	chr1:214170177-214170521(+)$1	1	74	97	21.0887
.(((((................)	chr1:22835569-22835826(+)$1	1	159	182	22.4330
(((((.((...........)).)	chr6:155579064-155579319(-)$1	1	151	174	19.5966
(...((((...........))))	chr16:70296177-70296401(-)$1	1	42	65	20.0939
...((...............)).	chr17:65821739-65822026(+)$1	1	72	95	18.2466
((..(..............)..)	chr16:72136950-72137167(+)$1	1	48	71	20.9857
((((((...........))))))	chr10:102142359-102142680(+)$1	1	242	265	19.3914
((.(((............)))))	chr8:48625481-48625740(+)$1	1	66	89	22.2738
(((((..............))))	chr9:139702006-139702262(+)$1	1	62	85	21.0887
)))(((((...........))))	chr20:39766148-39766369(+)$1	1	136	159	19.8433
((.(((...........))))))	chr17:7480611-7480836(+)$1	1	31	54	20.9472
.(((((.............)).)	chr21:34921911-34922163(+)$1	1	154	177	21.5654
(..(((..............)))	chr12:123006588-123006930(-)$1	1	135	158	22.6690
(..(((................)	chr18:60217482-60217827(+)$1	1	177	200	22.9917
((.(((...........))).))	chr11:17153392-17153667(-)$1	1	123	146	20.7706
((((((((...........))))	chr12:81648543-81648798(+)$1	1	117	140	20.2974
(((.((.............)).)	chr4:7062747-7063035(-)$1	1	30	53	20.9691
((.((((............))))	chr15:72810306-72810566(+)$1	1	139	162	21.8348
((.(((.............))))	chr17:8445325-8445562(-)$1	1	160	183	22.6351
.((((((............).))	chr9:90314958-90315210(+)$1	1	161	184	22.5865
....((.............))..	chr19:11170362-11170600(+)$1	1	103	126	19.2568
.(.((((............))))	chr7:99936373-99936614(+)$1	1	116	139	22.1924
((((((............)))))	chr16:72130775-72131009(+)$1	1	62	85	21.5613
...(((............)))..	chr12:123780316-123780595(-)$1	1	28	51	22.8377
(..(((.............))))	chr21:47647443-47647699(-)$1	1	147	170	22.8014
((((((..............)))	chr11:2999419-2999638(-)$1	1	32	55	21.2670
((.((((...........)))).	chr2:170663420-170663654(+)$1	1	142	165	20.2714
...(((................)	chr1:93575723-93575983(+)$1	1	159	182	23.0468
((.(((............)))))	chr11:122931288-122931525(-)$1	1	184	207	22.9604
((.((((............))))	chr1:46125759-46126028(-)$1	1	225	248	22.1870
(((.((...........))...)	chr14:21969092-21969335(-)$1	1	191	214	19.8328
....((................)	chr14:62204784-62205094(+)$1	1	117	140	22.2867
.(((((................)	chr20:30149411-30149660(+)$1	1	5	28	22.4330
(..((.(............).))	chr2:240954028-240954355(-)$1	1	113	136	22.5373
((((((...........))))))	chr2:228337085-228337333(+)$1	1	102	125	19.9067
((((((................)	chr19:17430247-17430570(+)$1	1	56	79	22.0439
(...((((...........))))	chr19:49518973-49519216(+)$1	1	5	28	20.0407
((((((...........))))))	chr12:133235826-133236124(-)$1	1	69	92	19.9067
((.(((..............)))	chr2:170402734-170403064(-)$1	1	214	237	22.1418
(.((((.............))))	chr21:44324176-44324478(+)$1	1	15	38	20.0898
((((((...........))))))	chrX:70517690-70517948(+)$1	1	14	37	19.3914
((.(((...............))	chr8:133806880-133807161(+)$1	1	132	155	18.9214
(..((((............))))	chr17:65960231-65960483(+)$1	1	89	112	22.0959
((..((..............)).	chr10:120816197-120816435(-)$1	1	132	155	21.4341

#PSSM
f : 0.20	d : 0.11	[ : 0.10	b : 0.10	g : 0.10	e : 0.07	" : 0.05	c : 0.05	# : 0.04	i : 0.02	h : 0.02	( : 0.01	! : 0.01	= : 0.01	$ : 0.01	F : 0.01	
e : 0.17	f : 0.16	! : 0.10	g : 0.08	" : 0.07	b : 0.07	c : 0.07	d : 0.07	# : 0.04	i : 0.02	h : 0.02	( : 0.01	= : 0.01	$ : 0.01	a : 0.01	: : 0.01	
[ : 0.23	e : 0.16	! : 0.13	f : 0.11	d : 0.07	g : 0.07	" : 0.04	# : 0.04	i : 0.02	c : 0.02	( : 0.01	h : 0.01	= : 0.01	$ : 0.01	
c : 0.23	e : 0.19	d : 0.13	b : 0.08	f : 0.08	g : 0.07	! : 0.04	" : 0.02	[ : 0.02	i : 0.01	h : 0.01	y : 0.01	= : 0.01	$ : 0.01	# : 0.01	
c : 0.23	e : 0.19	b : 0.17	d : 0.16	f : 0.08	g : 0.07	i : 0.01	h : 0.01	y : 0.01	a : 0.01	= : 0.01	
c : 0.23	d : 0.16	e : 0.14	f : 0.08	b : 0.08	g : 0.07	w : 0.05	y : 0.04	x : 0.02	[ : 0.02	i : 0.01	h : 0.01	= : 0.01	
w : 0.16	y : 0.16	v : 0.14	t : 0.11	u : 0.10	d : 0.10	x : 0.07	e : 0.02	a : 0.02	i : 0.01	g : 0.01	c : 0.01	b : 0.01	= : 0.01	
u : 0.22	w : 0.16	y : 0.16	v : 0.14	t : 0.13	x : 0.07	e : 0.02	d : 0.02	i : 0.01	b : 0.01	= : 0.01	
t : 0.23	u : 0.22	w : 0.16	y : 0.16	v : 0.14	x : 0.07	
t : 0.23	u : 0.22	w : 0.16	y : 0.16	v : 0.14	x : 0.07	
t : 0.23	u : 0.22	w : 0.16	y : 0.16	v : 0.14	x : 0.07	
t : 0.23	u : 0.22	w : 0.16	y : 0.16	v : 0.14	x : 0.07	
t : 0.23	u : 0.22	w : 0.16	y : 0.16	v : 0.14	x : 0.07	
t : 0.23	u : 0.22	w : 0.16	y : 0.16	v : 0.14	x : 0.07	
t : 0.23	u : 0.22	w : 0.16	y : 0.16	v : 0.14	x : 0.07	
t : 0.23	u : 0.22	w : 0.16	y : 0.16	v : 0.14	x : 0.07	
t : 0.23	u : 0.22	w : 0.16	y : 0.16	v : 0.14	x : 0.07	
u : 0.22	w : 0.16	y : 0.16	v : 0.14	t : 0.11	x : 0.07	g : 0.04	f : 0.02	c : 0.02	b : 0.01	
w : 0.16	y : 0.16	v : 0.14	u : 0.11	t : 0.10	c : 0.08	x : 0.07	f : 0.05	g : 0.04	e : 0.01	d : 0.01	b : 0.01	
c : 0.16	y : 0.14	d : 0.13	w : 0.10	e : 0.08	x : 0.07	b : 0.07	g : 0.05	f : 0.05	a : 0.04	i : 0.01	h : 0.01	= : 0.01	3 : 0.01	
c : 0.17	y : 0.14	d : 0.13	b : 0.11	e : 0.10	f : 0.08	g : 0.07	x : 0.04	] : 0.04	i : 0.01	h : 0.01	2 : 0.01	= : 0.01	3 : 0.01	
d : 0.17	c : 0.14	e : 0.11	b : 0.11	y : 0.11	f : 0.08	g : 0.07	] : 0.05	i : 0.01	h : 0.01	2 : 0.01	= : 0.01	5 : 0.01	4 : 0.01	3 : 0.01	
e : 0.19	d : 0.17	f : 0.14	b : 0.11	c : 0.11	g : 0.07	] : 0.05	i : 0.01	h : 0.01	: : 0.01	3 : 0.01	= : 0.01	5 : 0.01	4 : 0.01	2 : 0.01	

#score	1437.5535413787206
#seq	68
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_transcript_m1_run2.txt

#BEAR
fddddyyyyyyyyyyyyyyyydddd]ff	chr19:14625579-14625852(-)$1	273	196	224	20.4393
ggg[eeeeeuuuuuuuuuuuueeeee]g	chr20:62271402-62271635(-)$1	233	68	96	24.5942
c[a!!dddduuuuuuuuuuuudddda]c	chr16:57417465-57417760(+)$1	295	141	169	24.2361
ddffffffwwwwwwwwwwwwwwffffff	chr1:24121394-24121628(+)$1	234	36	64	22.3522
F::ffffffvvvvvvvvvvvvvffffff	chr10:102122558-102122772(+)$1	214	72	100	21.3347
iiiiiyyyyyyyyyyyyyyyyiiiiiii	chr3:52468752-52469036(-)$1	284	7	35	21.9659
iiiiiddddvvvvvvvvvvvvvdddd]i	chr19:2233588-2233845(-)$1	257	195	223	23.7430
ddggggggguuuuuuuuuuuuggggggg	chr17:46137733-46137953(+)$1	220	153	181	24.7549
[gggggggvvvvvvvvvvvvvggggggg	chr9:137331916-137332178(+)$1	262	14	42	24.7734
ddeeeeewwwwwwwwwwwwwweeeee]d	chr5:172743675-172743938(-)$1	263	65	93	21.8011
!eeeee!!bbtttttttttttbb4444e	chr20:30533303-30533564(-)$1	261	222	250	22.6098
ggggg!!bbuuuuuuuuuuuubbggggg	chr11:64621341-64621648(-)$1	307	236	264	24.8805
##gggggggwwwwwwwwwwwwwwggggg	chr9:136628745-136629009(-)$1	264	219	247	23.5782
eeeee!!bbvvvvvvvvvvvvvbb22ee	chr10:82278210-82278489(+)$1	279	82	110	22.7364
ffffffffwwwwwwwwwwwwwwffffff	chr16:2036407-2036685(+)$1	278	131	159	22.4428
DDgggggggtttttttttttggggggg:	chr12:89742714-89742966(-)$1	252	2	30	20.5500
ccc[eeeeevvvvvvvvvvvvveeeeec	chr1:156712813-156713071(-)$1	258	23	51	23.8096
!!hhhhhhhhttttttttttthhhhhhh	chr20:30823657-30823892(+)$1	235	62	90	20.4565
eeeeee[bbtttttttttttbbeeeee]	chr6:41757410-41757701(+)$1	291	110	138	22.3175
==========ttttttttttt=======	chr1:2520919-2521222(+)$1	303	40	68	24.1607
ffffff[ccctttttttttttcccffff	chr2:70505109-70505356(+)$1	247	145	173	23.2333
%%%%ddddvvvvvvvvvvvvvdddd333	chrX:128939580-128939879(-)$1	299	121	149	21.5999
[gggggggwwwwwwwwwwwwwwgggggg	chr12:51325301-51325523(+)$1	222	129	157	24.0101
ccc####ccctttttttttttccc333c	chr8:143817797-143818052(+)$1	255	1	29	23.9578
c[dddd[bbuuuuuuuuuuuubb]dddd	chr22:42981201-42981471(-)$1	270	81	109	22.9508
bbccc[ccctttttttttttccc]ccc2	chr5:132203188-132203461(+)$1	273	62	90	23.0135
ffffffyyyyyyyyyyyyyyyyffffff	chr11:71714349-71714636(-)$1	287	3	31	21.5685
$$$$$dddduuuuuuuuuuuudddd333	chr11:61569043-61569323(-)$1	280	81	109	23.7459
eee!!a[bbvvvvvvvvvvvvvbba22e	chr11:64620541-64620784(-)$1	243	128	156	23.1666
=========uuuuuuuuuuuu=======	chr5:176524862-176525171(+)$1	309	83	111	25.5557
[bb[a[ddddtttttttttttdddd]ab	chr20:30252966-30253246(-)$1	280	25	53	22.3342
[gggggggwwwwwwwwwwwwwwgggggg	chr12:51325241-51325485(+)$1	244	189	217	24.0101
iiiiiiiiitttttttttttiiiiiiii	chr19:42364256-42364460(+)$1	204	0	28	23.4420
::ccc[ccctttttttttttccc]cccE	chr11:64978806-64979096(+)$1	290	255	283	20.8345
[bb"""ddddtttttttttttdddd444	chr9:131910231-131910460(+)$1	229	60	88	22.5204
fffff"""bbtttttttttttbb4444f	chr8:11701404-11701652(-)$1	248	77	105	22.2949
h[ccccccwwwwwwwwwwwwwwccc]cc	chr19:18280437-18280738(+)$1	301	71	99	23.1389
c"""eeeeettttttttttteeeee333	chr2:231913009-231913227(+)$1	218	23	51	23.4420
gggggddddvvvvvvvvvvvvvdddd22	chr5:150408331-150408583(+)$1	252	77	105	23.4193
""ccc[cccwwwwwwwwwwwwwwccc]c	chr19:1577239-1577533(-)$1	294	254	282	23.4485
hhh[fffffftttttttttttffffff]	chr17:41846224-41846485(-)$1	261	53	81	22.2745
:eeeee[bbtttttttttttbb]eeeee	chr16:18800201-18800454(-)$1	253	206	234	21.3522
ccc!!dddduuuuuuuuuuuudddd333	chr7:100781130-100781379(+)$1	249	191	219	24.5752
$$$$$eeeeettttttttttteeeee55	chr19:3491184-3491486(-)$1	302	65	93	20.6812
%%%%%%cccuuuuuuuuuuuuccc333e	chr16:58079408-58079693(+)$1	285	30	58	21.6302
ddd[cccawwwwwwwwwwwwwwa]ccc]	chr19:682832-683093(+)$1	261	151	179	22.7826
=========uuuuuuuuuuuu=======	chr17:7215567-7215791(+)$1	224	32	60	25.5557
=[ccc[cccyyyyyyyyyyyyyyyyccc	chr11:118916027-118916288(-)$1	261	25	53	21.6886
ggggggcccuuuuuuuuuuuuccc22gg	chr14:94844223-94844463(-)$1	240	163	191	24.9630
ffffffyyyyyyyyyyyyyyyyffffff	chr22:19025369-19025688(-)$1	319	265	293	21.5685
!!ggggggguuuuuuuuuuuuggggggg	chr10:102121876-102122098(+)$1	222	147	175	25.4277
GGffffffvvvvvvvvvvvvvfffffff	chr16:8947862-8948117(-)$1	255	144	172	22.5083
gggggg[bbwwwwwwwwwwwwwwbb]gg	chr16:10623900-10624170(-)$1	270	78	106	22.7452
"ccceeeeevvvvvvvvvvvvveeeee]	chr3:38294490-38294860(+)$1	370	311	339	23.8422
"""fffffftttttttttttffffff]d	chr1:228363294-228363568(+)$1	274	71	99	22.8576
cgggggggvvvvvvvvvvvvvggggggg	chr12:113827012-113827265(+)$1	253	11	39	24.5927
====!!cccuuuuuuuuuuuuccc]===	chr9:137329199-137329462(+)$1	263	17	45	25.5128
ccc[eeeeeuuuuuuuuuuuueeeee]c	chr1:19543859-19544113(-)$1	254	211	239	24.4156
::gggggggtttttttttttggggggg:	chr12:133298930-133299230(+)$1	300	241	269	20.8933
[gggggggxxxxxxxxxxxxxxxggggg	chr22:44346008-44346259(+)$1	251	153	181	19.1197
&&&ffffffuuuuuuuuuuuuffffff8	chr20:30754662-30754901(+)$1	239	175	203	21.9758

#otherMatches

#Seq PSSM
CCACUGCCAACAUGAGACCAAAGUGUGU	chr19:14625579-14625852(-)$1	273	196	224	20.4393
GGAGGCUGUCUUUGUACCACUGCAGCAU	chr20:62271402-62271635(-)$1	233	68	96	24.5942
GGUUCUGAUCCUAGUUCCACCAUCAAGC	chr16:57417465-57417760(+)$1	295	141	169	24.2361
CUGCUUUCUUAUCCAUUUCCCUGGAGGC	chr1:24121394-24121628(+)$1	234	36	64	22.3522
AAAAGAGGGUUUAUUUUCAGUCCCCUCU	chr10:102122558-102122772(+)$1	214	72	100	21.3347
UCUUCUCCAUCUGAGAAUCACGGAGAGG	chr3:52468752-52469036(-)$1	284	7	35	21.9659
uccuccugccucagcuucccaaguagcg	chr19:2233588-2233845(-)$1	257	195	223	23.7430
GUGUUUGUGUUCCCCACCCCUCACAGAC	chr17:46137733-46137953(+)$1	220	153	181	24.7549
GAAAGGUAAAAAAAAAAAAUCUAUUUUU	chr9:137331916-137332178(+)$1	262	14	42	24.7734
UGGGGAGUACAUUUGACAAAUUUCCCUU	chr5:172743675-172743938(-)$1	263	65	93	21.8011
GGCAGUGGCUGUGGGGGUGUAAGAAUGA	chr20:30533303-30533564(-)$1	261	222	250	22.6098
AUGGACAGGAACACCAGGCACCCUCCGU	chr11:64621341-64621648(-)$1	307	236	264	24.8805
AUCGGAGGGGACCUGCCCCCACACCCUC	chr9:136628745-136629009(-)$1	264	219	247	23.5782
UUUGCAGGAUCCUCAGCCAUGUUCAAGU	chr10:82278210-82278489(+)$1	279	82	110	22.7364
CUGAGGGUCCACCAGCCAUCCUACCCUC	chr16:2036407-2036685(+)$1	278	131	159	22.4428
CUGGGCUGCUUUCUUUGUGUGUGGCCCC	chr12:89742714-89742966(-)$1	252	2	30	20.5500
CUCUAGGUCCCCAUACUCCUAUGAUCUG	chr1:156712813-156713071(-)$1	258	23	51	23.8096
CCUUCUUCCUUGUUUACCUGUGGGAGGA	chr20:30823657-30823892(+)$1	235	62	90	20.4565
AAAGUUCUGUACAUAGUUCCCAAGCUUC	chr6:41757410-41757701(+)$1	291	110	138	22.3175
UGGGUCGGGAUGCCGAACCUCUCCUGAU	chr1:2520919-2521222(+)$1	303	40	68	24.1607
ACUUGAAGAUGUUAAACAAAAAUCUCAA	chr2:70505109-70505356(+)$1	247	145	173	23.2333
CCUUUGUCUCCCAUCCACUCUGACACCU	chrX:128939580-128939879(-)$1	299	121	149	21.5999
uugcagugaaccgagaucaugccauugu	chr12:51325301-51325523(+)$1	222	129	157	24.0101
AACUCCUCUGUCCUCUAUAUUCAGCAUG	chr8:143817797-143818052(+)$1	255	1	29	23.9578
CUUUGUGUGUAUUAAGCUUUUCAAACAA	chr22:42981201-42981471(-)$1	270	81	109	22.9508
GCUGCCUAUGAAAAUGACAAAUGAGCAA	chr5:132203188-132203461(+)$1	273	62	90	23.0135
GGCUAGUAUCGCAAGUUCUCAUCUGGCC	chr11:71714349-71714636(-)$1	287	3	31	21.5685
AUAACAGCAAGGAAACAUUAAUGCUUAG	chr11:61569043-61569323(-)$1	280	81	109	23.7459
UGGAUGUCCUUACAACGCCCCUGGCCCC	chr11:64620541-64620784(-)$1	243	128	156	23.1666
ACCUCCUGCCUCCCAAUACCAGCAGGAG	chr5:176524862-176525171(+)$1	309	83	111	25.5557
AGGCUGCUUGGGAUAAAGAUGCAAGGAC	chr20:30252966-30253246(-)$1	280	25	53	22.3342
uugcagugaaccgagaucaugccauugu	chr12:51325241-51325485(+)$1	244	189	217	24.0101
UCUCGCGAGCUUUCGGAACUCUCGCGAG	chr19:42364256-42364460(+)$1	204	0	28	23.4420
CCUGAUGUGUCCCCUCUCCCCACUUCAG	chr11:64978806-64979096(+)$1	290	255	283	20.8345
UGGAGAGGCCUUAGCUGUCCUGGCUGGU	chr9:131910231-131910460(+)$1	229	60	88	22.5204
AUAGCUGUGCUCUAuuuuuuuguuguug	chr8:11701404-11701652(-)$1	248	77	105	22.2949
GCCUGGGCACCCUGAUUUUUAAGCCAUA	chr19:18280437-18280738(+)$1	301	71	99	23.1389
UUUACGCAGCAGACACACAACUGCGCCU	chr2:231913009-231913227(+)$1	218	23	51	23.4420
GGGCCAGCCCUUAGUGCAUUCAGGCUAA	chr5:150408331-150408583(+)$1	252	77	105	23.4193
GUCUGAGGGAUCUGCUCCUUAACCCCCC	chr19:1577239-1577533(-)$1	294	254	282	23.4485
GGUGUCCGUCAGUUAUUAGUGGAUGGAG	chr17:41846224-41846485(-)$1	261	53	81	22.2745
AGUCCUGUAGAAAUUAAUUAUGGGGGAC	chr16:18800201-18800454(-)$1	253	206	234	21.3522
CUGGCCUGGCCAUCUCCCUCCCCAGAAA	chr7:100781130-100781379(+)$1	249	191	219	24.5752
UCUAAACCGGGUGUGUGUAAAUCGGUGU	chr19:3491184-3491486(-)$1	302	65	93	20.6812
CCCUCUCAGCCCUCACACACCCUGUCUG	chr16:58079408-58079693(+)$1	285	30	58	21.6302
AGGCCUGCAGACCCAGACUCCAGCCAGA	chr19:682832-683093(+)$1	261	151	179	22.7826
CUCUCCCCAAACCCCUUUAGAUggggag	chr17:7215567-7215791(+)$1	224	32	60	25.5557
CCACCACUUCUAUUUAUUUAACAUCGAG	chr11:118916027-118916288(-)$1	261	25	53	21.6886
AGAACUGCCUGAUCGUGCCGUGGCCCAG	chr14:94844223-94844463(-)$1	240	163	191	24.9630
UGGGCUGCAUCUAUCUCCUUAAAGUCCA	chr22:19025369-19025688(-)$1	319	265	293	21.5685
GUCUUAAUAAAAUAAACUAGAUAUUAGG	chr10:102121876-102122098(+)$1	222	147	175	25.4277
GCUGCCGACAUUGCAAACUUUUUGGCAG	chr16:8947862-8948117(-)$1	255	144	172	22.5083
ccagauauccucccugccaucaugaagu	chr16:10623900-10624170(-)$1	270	78	106	22.7452
ACCACUGAAGUAGAAUUGAUUGUUCAGC	chr3:38294490-38294860(+)$1	370	311	339	23.8422
CCUGGCCCCACCCAUGCUCAGGGGCCCC	chr1:228363294-228363568(+)$1	274	71	99	22.8576
CUGGAGGGUUCUGAAUGUCCUCUCUCCA	chr12:113827012-113827265(+)$1	253	11	39	24.5927
GUUUCAGACUCCCGACUCCCCGUUCAGA	chr9:137329199-137329462(+)$1	263	17	45	25.5128
cucagcuaauuuuuuguauuuuuaguag	chr1:19543859-19544113(-)$1	254	211	239	24.4156
UAUGCUGUUAAUUUAGGAAAAACAGUAC	chr12:133298930-133299230(+)$1	300	241	269	20.8933
AGCAUUUGUUUUAUAAUUUUUUCCAAGU	chr22:44346008-44346259(+)$1	251	153	181	19.1197
AGAGAGCGAUAUUGGAGUCUUUUGUUCA	chr20:30754662-30754901(+)$1	239	175	203	21.9758

#DB
(((((................)))).))	chr19:14625579-14625852(-)$1	1	196	224	20.4393
(((.(((((............))))).)	chr20:62271402-62271635(-)$1	1	68	96	24.5942
(.(..((((............))))).)	chr16:57417465-57417760(+)$1	1	141	169	24.2361
((((((((..............))))))	chr1:24121394-24121628(+)$1	1	36	64	22.3522
(..((((((.............))))))	chr10:102122558-102122772(+)$1	1	72	100	21.3347
(((((................)))))))	chr3:52468752-52469036(-)$1	1	7	35	21.9659
(((((((((.............)))).)	chr19:2233588-2233845(-)$1	1	195	223	23.7430
))(((((((............)))))))	chr17:46137733-46137953(+)$1	1	153	181	24.7549
.(((((((.............)))))))	chr9:137331916-137332178(+)$1	1	14	42	24.7734
(((((((..............))))).)	chr5:172743675-172743938(-)$1	1	65	93	21.8011
.(((((..((...........))....)	chr20:30533303-30533564(-)$1	1	222	250	22.6098
(((((..((............)))))))	chr11:64621341-64621648(-)$1	1	236	264	24.8805
..(((((((..............)))))	chr9:136628745-136629009(-)$1	1	219	247	23.5782
(((((..((.............))..))	chr10:82278210-82278489(+)$1	1	82	110	22.7364
))((((((..............))))))	chr16:2036407-2036685(+)$1	1	131	159	22.4428
(((((((((...........))))))).	chr12:89742714-89742966(-)$1	1	2	30	20.5500
(((.(((((.............))))))	chr1:156712813-156713071(-)$1	1	23	51	23.8096
..((((((((...........)))))))	chr20:30823657-30823892(+)$1	1	62	90	20.4565
((((((.((...........))))))).	chr6:41757410-41757701(+)$1	1	110	138	22.3175
((((((((((...........)))))))	chr1:2520919-2521222(+)$1	1	40	68	24.1607
((((((.(((...........)))))))	chr2:70505109-70505356(+)$1	1	145	173	23.2333
....((((.............))))...	chrX:128939580-128939879(-)$1	1	121	149	21.5999
.(((((((..............))))))	chr12:51325301-51325523(+)$1	1	129	157	24.0101
(((....(((...........)))...)	chr8:143817797-143818052(+)$1	1	1	29	23.9578
(.((((.((............)).))))	chr22:42981201-42981471(-)$1	1	81	109	22.9508
(((((.(((...........))).))).	chr5:132203188-132203461(+)$1	1	62	90	23.0135
((((((................))))))	chr11:71714349-71714636(-)$1	1	3	31	21.5685
.....((((............))))...	chr11:61569043-61569323(-)$1	1	81	109	23.7459
(((..(.((.............)))..)	chr11:64620541-64620784(-)$1	1	128	156	23.1666
(((((((((............)))))))	chr5:176524862-176525171(+)$1	1	83	111	25.5557
.((.(.((((...........)))).))	chr20:30252966-30253246(-)$1	1	25	53	22.3342
.(((((((..............))))))	chr12:51325241-51325485(+)$1	1	189	217	24.0101
(((((((((...........))))))))	chr19:42364256-42364460(+)$1	1	0	28	23.4420
..(((.(((...........))).))))	chr11:64978806-64979096(+)$1	1	255	283	20.8345
.((...((((...........))))...	chr9:131910231-131910460(+)$1	1	60	88	22.5204
(((((...((...........))....)	chr8:11701404-11701652(-)$1	1	77	105	22.2949
(.((((((..............))).))	chr19:18280437-18280738(+)$1	1	71	99	23.1389
(...(((((...........)))))...	chr2:231913009-231913227(+)$1	1	23	51	23.4420
(((((((((.............))))..	chr5:150408331-150408583(+)$1	1	77	105	23.4193
..(((.(((..............))).)	chr19:1577239-1577533(-)$1	1	254	282	23.4485
(((.((((((...........)))))).	chr17:41846224-41846485(-)$1	1	53	81	22.2745
.(((((.((...........)).)))))	chr16:18800201-18800454(-)$1	1	206	234	21.3522
(((..((((............))))...	chr7:100781130-100781379(+)$1	1	191	219	24.5752
.....(((((...........)))))..	chr19:3491184-3491486(-)$1	1	65	93	20.6812
......(((............)))...)	chr16:58079408-58079693(+)$1	1	30	58	21.6302
(((.((((..............).))).	chr19:682832-683093(+)$1	1	151	179	22.7826
(((((((((............)))))))	chr17:7215567-7215791(+)$1	1	32	60	25.5557
(.(((.(((................)))	chr11:118916027-118916288(-)$1	1	25	53	21.6886
(((((((((............)))..))	chr14:94844223-94844463(-)$1	1	163	191	24.9630
((((((................))))))	chr22:19025369-19025688(-)$1	1	265	293	21.5685
..(((((((............)))))))	chr10:102121876-102122098(+)$1	1	147	175	25.4277
))((((((.............))))))(	chr16:8947862-8948117(-)$1	1	144	172	22.5083
((((((.((..............)).))	chr16:10623900-10624170(-)$1	1	78	106	22.7452
.((((((((.............))))).	chr3:38294490-38294860(+)$1	1	311	339	23.8422
...((((((...........)))))).)	chr1:228363294-228363568(+)$1	1	71	99	22.8576
((((((((.............)))))))	chr12:113827012-113827265(+)$1	1	11	39	24.5927
((((..(((............))).)))	chr9:137329199-137329462(+)$1	1	17	45	25.5128
(((.(((((............))))).)	chr1:19543859-19544113(-)$1	1	211	239	24.4156
..(((((((...........))))))).	chr12:133298930-133299230(+)$1	1	241	269	20.8933
.(((((((...............)))))	chr22:44346008-44346259(+)$1	1	153	181	19.1197
...((((((............)))))).	chr20:30754662-30754901(+)$1	1	175	203	21.9758

#PSSM
c : 0.13	f : 0.09	[ : 0.09	g : 0.08	= : 0.08	d : 0.06	i : 0.04	! : 0.04	e : 0.04	: : 0.04	" : 0.04	% : 0.03	$ : 0.03	h : 0.03	F : 0.01	# : 0.01	D : 0.01	b : 0.01	G : 0.01	& : 0.01	
g : 0.16	d : 0.08	e : 0.08	f : 0.08	c : 0.08	[ : 0.06	= : 0.06	: : 0.04	i : 0.04	b : 0.04	" : 0.04	! : 0.03	% : 0.03	$ : 0.03	# : 0.01	D : 0.01	h : 0.01	G : 0.01	& : 0.01	
g : 0.24	c : 0.16	f : 0.11	e : 0.09	= : 0.06	d : 0.04	i : 0.04	h : 0.03	% : 0.03	$ : 0.03	b : 0.03	" : 0.03	a : 0.01	: : 0.01	& : 0.01	
g : 0.22	f : 0.16	[ : 0.09	c : 0.09	e : 0.08	= : 0.06	! : 0.04	i : 0.04	d : 0.03	% : 0.03	$ : 0.03	" : 0.03	h : 0.01	# : 0.01	
g : 0.22	f : 0.18	e : 0.16	c : 0.09	! : 0.06	d : 0.04	i : 0.04	= : 0.04	$ : 0.03	h : 0.01	# : 0.01	a : 0.01	" : 0.01	% : 0.01	
g : 0.19	e : 0.16	f : 0.16	d : 0.11	[ : 0.08	! : 0.04	= : 0.04	y : 0.03	" : 0.03	c : 0.03	h : 0.01	# : 0.01	a : 0.01	i : 0.01	% : 0.01	
g : 0.16	c : 0.14	d : 0.13	e : 0.11	f : 0.11	[ : 0.09	y : 0.06	! : 0.04	= : 0.04	h : 0.01	# : 0.01	i : 0.01	" : 0.01	
g : 0.16	c : 0.16	d : 0.13	f : 0.11	b : 0.11	e : 0.09	y : 0.06	= : 0.04	w : 0.01	! : 0.01	h : 0.01	i : 0.01	" : 0.01	a : 0.01	
b : 0.14	c : 0.14	d : 0.11	w : 0.11	e : 0.09	g : 0.08	y : 0.06	f : 0.06	v : 0.06	= : 0.04	h : 0.01	i : 0.01	x : 0.01	
u : 0.24	v : 0.18	w : 0.16	t : 0.14	y : 0.08	b : 0.03	c : 0.03	d : 0.03	h : 0.01	= : 0.01	f : 0.01	e : 0.01	x : 0.01	
t : 0.31	u : 0.24	v : 0.18	w : 0.16	y : 0.08	x : 0.01	
t : 0.31	u : 0.24	v : 0.18	w : 0.16	y : 0.08	x : 0.01	
t : 0.31	u : 0.24	v : 0.18	w : 0.16	y : 0.08	x : 0.01	
t : 0.31	u : 0.24	v : 0.18	w : 0.16	y : 0.08	x : 0.01	
t : 0.31	u : 0.24	v : 0.18	w : 0.16	y : 0.08	x : 0.01	
t : 0.31	u : 0.24	v : 0.18	w : 0.16	y : 0.08	x : 0.01	
t : 0.31	u : 0.24	v : 0.18	w : 0.16	y : 0.08	x : 0.01	
t : 0.31	u : 0.24	v : 0.18	w : 0.16	y : 0.08	x : 0.01	
t : 0.31	u : 0.24	v : 0.18	w : 0.16	y : 0.08	x : 0.01	
t : 0.31	u : 0.24	v : 0.18	w : 0.16	y : 0.08	x : 0.01	
u : 0.24	v : 0.18	w : 0.16	t : 0.16	y : 0.08	g : 0.03	b : 0.03	c : 0.03	i : 0.01	e : 0.01	f : 0.01	x : 0.01	
w : 0.14	d : 0.11	v : 0.11	c : 0.11	g : 0.09	b : 0.09	e : 0.08	f : 0.06	= : 0.04	y : 0.04	i : 0.03	h : 0.01	x : 0.01	
d : 0.14	f : 0.14	e : 0.13	g : 0.13	c : 0.13	b : 0.09	w : 0.04	= : 0.04	i : 0.03	h : 0.01	] : 0.01	a : 0.01	y : 0.01	x : 0.01	
g : 0.18	d : 0.14	e : 0.14	f : 0.14	c : 0.11	] : 0.06	b : 0.04	= : 0.04	i : 0.03	4 : 0.03	h : 0.01	y : 0.01	
g : 0.18	d : 0.16	f : 0.16	e : 0.14	c : 0.08	= : 0.04	i : 0.03	4 : 0.03	2 : 0.03	3 : 0.03	h : 0.01	a : 0.01	y : 0.01	b : 0.01	] : 0.01	
g : 0.18	f : 0.16	e : 0.13	3 : 0.09	c : 0.08	] : 0.06	= : 0.06	d : 0.04	4 : 0.04	2 : 0.04	i : 0.03	a : 0.01	h : 0.01	
g : 0.21	f : 0.16	] : 0.11	3 : 0.09	e : 0.08	c : 0.08	= : 0.06	4 : 0.04	i : 0.03	2 : 0.03	h : 0.01	d : 0.01	a : 0.01	5 : 0.01	
g : 0.19	f : 0.14	c : 0.11	e : 0.08	] : 0.06	= : 0.06	3 : 0.06	i : 0.04	d : 0.04	: : 0.03	2 : 0.03	h : 0.01	b : 0.01	E : 0.01	4 : 0.01	5 : 0.01	8 : 0.01	

#score	1400.189555446429
#seq	61
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_CDS_m2_run1.txt

#BEAR
[bb!!gggggggoooooogggggggbb]dd	chr1:156024536-156024810(+)$1	274	237	267	13.0113
[bb!!ccc[cccooooooccc]cccbb]ee	chr19:39138225-39138529(+)$1	304	205	235	13.1173
#eeeee####bboooooobb4444eeeeeb	chr8:25315623-25315952(-)$1	329	220	250	14.3900
ddd"""ffffffooooooffffffdddd]d	chr2:20251173-20251423(-)$1	250	215	245	12.8423
eeee[a[eeeeeooooooeeeee]a]eeee	chr16:30537564-30537833(-)$1	269	236	266	13.6591
b[ffffff[cccoooooocccffffff]bb	chr7:66406838-66407112(+)$1	274	167	197	12.9398
$$$eeeee!!bboooooobbeeeee333dd	chr8:29940260-29940518(-)$1	258	28	58	14.4713
"""eeeee"""ccclllccc]eeeee]eee	chr1:116926533-116926823(+)$1	290	20	50	9.7968
hhhhhhffffffooooooffffff]hhhhh	chr19:36486052-36486353(+)$1	301	236	266	10.7567
$$$$$dddd[aooooooaddddffffff]f	chr17:27215861-27216110(-)$1	249	25	55	11.1752
ee[eeeee[cccooooooccceeeee22ee	chr12:111180411-111180678(-)$1	267	25	55	13.7883
[eeeee[eeeeeooooooeeeee333eeee	chr17:47784990-47785319(-)$1	329	190	220	13.9452
ee:::gggggggoooooogggggggccccc	chr17:37886369-37886645(-)$1	276	137	167	10.0172
ddd!!eeeeebboooooobb]eeeeedddd	chr1:205718982-205719196(-)$1	214	103	133	14.5408
cffffff[ddddoooooodddd]ffffff]	chr4:26322477-26322784(+)$1	307	133	163	12.2261
ddd!!eeeee[aooooooaeeeee]dddd]	chr22:50016976-50017279(-)$1	303	125	155	13.6987
:eeeee"""cccooooooccc]eeeee::f	chr3:33114051-33114306(-)$1	255	153	183	10.9496
eeee[bb[ddddooooooddddbb]eeeee	chrX:48753939-48754201(-)$1	262	179	209	12.0706
[a!!eeeee[bblllbb]eeeee22a]ddd	chr22:42475633-42475902(+)$1	269	127	157	9.0080
#eeeee[bb[bboooooobb]bb]eeeee3	chr12:25054647-25054919(-)$1	272	71	101	14.0636
dddffffff[bboooooobb]ffffff]dd	chr1:112233855-112234085(+)$1	230	32	62	14.6750
gffffff"""bboooooobb4444ffffff	chr6:32157579-32157840(-)$1	261	139	169	14.3065
=======!!eeeeellleeeee========	chr10:98346473-98346743(-)$1	270	158	188	8.5787
!!dddd####bboooooobb666666dddd	chr16:75498330-75498611(-)$1	281	201	231	11.1642
eeeeeeee[cccooooooccc]eeeee22e	chr6:2900654-2900956(-)$1	302	163	193	13.5914
e[bb!!ccc[bboooooobb]ccc22bb]e	chr7:128097173-128097533(+)$1	360	29	59	13.7357
fff"""ffffffooooooffffff]fffff	chr19:2236052-2236281(-)$1	229	71	101	13.4405
fff"""ffffffooooooffffff]fffff	chr19:2236081-2236355(-)$1	274	145	175	13.4405
[dddd[ffffffooooooffffff]dddd]	chr6:10749754-10749969(+)$1	215	166	196	12.9366
%%ggggggg[bboooooobbgggggggeee	chr2:54197731-54197981(-)$1	250	164	194	13.7634
ggg####eeeeeooooooeeeee>>>>>>>	chr7:87846349-87846606(-)$1	257	56	86	11.6629
dd[iiiiiiiiiooooooiiiiiiiiiddd	chr12:121148201-121148544(+)$1	343	23	53	13.3014
dd[ffffff[bboooooobb]ffffff]dd	chr11:2405799-2406099(+)$1	300	224	254	14.8649
fffff[ccc[bboooooobb]cccffffff	chr7:129843715-129843988(-)$1	273	15	45	14.2038
b"""eeeee[bboooooobbeeeee]bb22	chr16:57279073-57279391(+)$1	318	76	106	13.6935
eee!!a[eeeeeooooooeeeee]a22eee	chrX:20284609-20284862(-)$1	253	166	196	13.4793
ee"""dddd[bboooooobbdddd333eee	chr6:42984771-42985144(+)$1	373	275	305	14.2395
fffffffff[bboooooobb]ffffff22f	chr1:19949863-19950139(+)$1	276	134	164	14.3231
dddd[ccc!!bboooooobb22cccddddc	chr12:93862933-93863240(+)$1	307	55	85	13.5888
c[============lll============]	chr22:50873157-50873540(+)$1	383	219	249	10.3203
!ggggggg"""cccoooooocccggggggg	chr7:65338240-65338499(+)$1	259	108	138	10.8781
eeee"""ddddaooooooa]dddd22eeee	chr4:103790087-103790445(+)$1	358	280	310	12.6329
ffffff[bb[bboooooobb]bb]ffffff	chr8:98788044-98788287(+)$1	243	101	131	13.4394
[a[eeeee!!bblllbb4444eeeee]a]f	chr9:37784677-37784988(-)$1	311	203	233	9.7696
EEffffff"""aooooooa333ffffff:f	chr20:43530070-43530299(+)$1	229	90	120	11.1232
dddd[bb[ddddooooooddddbb]dddd]	chr22:50018375-50018652(-)$1	277	35	65	11.2822

#otherMatches

#Seq PSSM
GGCGAGCGCUGCAGUGGGGCGGCGCGCGGC	chr1:156024536-156024810(+)$1	274	237	267	13.0113
AGCAGCGCGGGCAAUGGCGCUGGCGGCGGG	chr19:39138225-39138529(+)$1	304	205	235	13.1173
AGCCCCAAGAACGGAAAGGUAAcgggggcg	chr8:25315623-25315952(-)$1	329	220	250	14.3900
UCCGCACCGGGACGAUCAUCCUGGGGACCU	chr2:20251173-20251423(-)$1	250	215	245	12.8423
GGCUGUGGCUCCAGGGAGGGAGCGAGGGCC	chr16:30537564-30537833(-)$1	269	236	266	13.6591
GCAGAGGUAUAGUAUGCUCUGACUUCUCCC	chr7:66406838-66407112(+)$1	274	167	197	12.9398
CCCGGCGCCAUCUUCAUCGAGCGCCAUGGC	chr8:29940260-29940518(-)$1	258	28	58	14.4713
ACCAAAAUCCCCUGCUCCAGAAUUUUCAGU	chr1:116926533-116926823(+)$1	290	20	50	9.7968
AGCAUGCGGGCCUGCCGCGGUCCGACGUGC	chr19:36486052-36486353(+)$1	301	236	266	10.7567
CAAGAACCGACUGACUUGCGGUGGUUUGCU	chr17:27215861-27216110(-)$1	249	25	55	11.1752
GGGGUGGCAGGGGGGGGACccgccgcggcu	chr12:111180411-111180678(-)$1	267	25	55	13.7883
GUCUGCUAUUUUUACUAUGGGAUCCUGCAG	chr17:47784990-47785319(-)$1	329	190	220	13.9452
GGCCAGUGCUGUGAAGGAGCAGUAUCCGGG	chr17:37886369-37886645(-)$1	276	137	167	10.0172
GCCUGUCAGGUCAGUGCGGAGUCUGAGGCC	chr1:205718982-205719196(-)$1	214	103	133	14.5408
AUCUCGCGAGGGUUGGAGUUUUGGCGAGAG	chr4:26322477-26322784(+)$1	307	133	163	12.2261
AGGACGGGGCAcagcagaggccucaccugc	chr22:50016976-50017279(-)$1	303	125	155	13.6987
AGGAUGGCCAGCCAUUUCGCUACAUCUCAG	chr3:33114051-33114306(-)$1	255	153	183	10.9496
GGGUUGGUGUGGGGUUAGCUAUCUUGCCCA	chrX:48753939-48754201(-)$1	262	179	209	12.0706
GGAGCUGGGGGCAUGGCGUCCGGAGCGGCU	chr22:42475633-42475902(+)$1	269	127	157	9.0080
ACUUAAUGGUGGUUUAAUUCUUCUUUAAGG	chr12:25054647-25054919(-)$1	272	71	101	14.0636
UGCAGUAGUGUACAUUAUUAGACUGUUAGC	chr1:112233855-112234085(+)$1	230	32	62	14.6750
CCCCCAGCUAUGGACGAACGGCUACUgggg	chr6:32157579-32157840(-)$1	261	139	169	14.3065
CGCUGCCUGGCGCUCUUGGCGUGGCGGCGG	chr10:98346473-98346743(-)$1	270	158	188	8.5787
ACGGGACCCUGUGCCCCAACUCUACUUCCC	chr16:75498330-75498611(-)$1	281	201	231	11.1642
UACUGUGUCAAGAUAACCCUUCGCACAACG	chr6:2900654-2900956(-)$1	302	163	193	13.5914
GCAUGCAUAUCCCCAAAAGGCUAUAGAUUC	chr7:128097173-128097533(+)$1	360	29	59	13.7357
GGCAGCCGGCCGAGAUGGCGGCCGAGCUGG	chr19:2236052-2236281(-)$1	229	71	101	13.4405
GGCAGCCGGCCGAGAUGGCGGCCGAGCUGG	chr19:2236081-2236355(-)$1	274	145	175	13.4405
UGUAAAAACAGGUAGGGUUUUGUUGUUACU	chr6:10749754-10749969(+)$1	215	166	196	12.9366
CAAGCUGCUGCCCUACGCGGAGCGGCUAGA	chr2:54197731-54197981(-)$1	250	164	194	13.7634
AAGUACAAAUCACUAUUAUGAUUCCUCUAA	chr7:87846349-87846606(-)$1	257	56	86	11.6629
gcUCUCCAUAGUUACCGCGCUGUGGAGGCG	chr12:121148201-121148544(+)$1	343	23	53	13.3014
UGCUGUGCAGGCUAAGUUGUGUGCAUGUCA	chr11:2405799-2406099(+)$1	300	224	254	14.8649
CUGUGCUUUUUGUUUUUUCAUAGAUGCAGG	chr7:129843715-129843988(-)$1	273	15	45	14.2038
CAGGCGCUGACCCGACCUGGCAGUGAGCUG	chr16:57279073-57279391(+)$1	318	76	106	13.6935
UCCGACAGCGCUGAGGUGAGUGCAGCAGGG	chrX:20284609-20284862(-)$1	253	166	196	13.4793
GACACUGCGUCAGAUAGAUGUGCACAUUUU	chr6:42984771-42985144(+)$1	373	275	305	14.2395
GCAUGGGAUUAGGAAUGGCUUAUUCCAACU	chr1:19949863-19950139(+)$1	276	134	164	14.3231
GAAGCAGAUUCUAAAAGCAGUUUCUCUUCA	chr12:93862933-93863240(+)$1	307	55	85	13.5888
GGUGCCUGUUGCUUUCAGGGCAGCGGGUGG	chr22:50873157-50873540(+)$1	383	219	249	10.3203
cggcggGAAGAUGGCGGCUCCCGUCCUGCU	chr7:65338240-65338499(+)$1	259	108	138	10.8781
CCCCAUCCUUGCACGUUCGCCAAGCGGGGG	chr4:103790087-103790445(+)$1	358	280	310	12.6329
GGAGCCGGCAGCAGCGGCGCGGCGGGCUCC	chr8:98788044-98788287(+)$1	243	101	131	13.4394
UCCGUCACAAGGAGCCCGGCAGUGGCAGCG	chr9:37784677-37784988(-)$1	311	203	233	9.7696
UCUUGUUCUAGGGAAUGACAAUGGAUAAAA	chr20:43530070-43530299(+)$1	229	90	120	11.1232
GGGCUGGUGGCAGCUUUGUGCUCCUGUCUG	chr22:50018375-50018652(-)$1	277	35	65	11.2822

#DB
.((..(((((((......))))))))).))	chr1:156024536-156024810(+)$1	1	237	267	13.0113
.((..(((.(((......))).))))).))	chr19:39138225-39138529(+)$1	1	205	235	13.1173
.(((((....((......))....))))))	chr8:25315623-25315952(-)$1	1	220	250	14.3900
(((...((((((......)))))))))).)	chr2:20251173-20251423(-)$1	1	215	245	12.8423
((((.(.(((((......))))).).))))	chr16:30537564-30537833(-)$1	1	236	266	13.6591
(.((((((.(((......))))))))).))	chr7:66406838-66407112(+)$1	1	167	197	12.9398
...(((((..((......)))))))...))	chr8:29940260-29940518(-)$1	1	28	58	14.4713
...(((((...(((...))).))))).)))	chr1:116926533-116926823(+)$1	1	20	50	9.7968
((((((((((((......)))))).)))))	chr19:36486052-36486353(+)$1	1	236	266	10.7567
.....((((.(......))))))))))).)	chr17:27215861-27216110(-)$1	1	25	55	11.1752
((.(((((.(((......))))))))..))	chr12:111180411-111180678(-)$1	1	25	55	13.7883
.(((((.(((((......)))))...))))	chr17:47784990-47785319(-)$1	1	190	220	13.9452
))...(((((((......)))))))(((((	chr17:37886369-37886645(-)$1	1	137	167	10.0172
(((..(((((((......)).)))))))))	chr1:205718982-205719196(-)$1	1	103	133	14.5408
(((((((.((((......)))).)))))).	chr4:26322477-26322784(+)$1	1	133	163	12.2261
(((..(((((.(......)))))).)))).	chr22:50016976-50017279(-)$1	1	125	155	13.6987
.(((((...(((......))).)))))..(	chr3:33114051-33114306(-)$1	1	153	183	10.9496
((((.((.((((......)))))).)))))	chrX:48753939-48754201(-)$1	1	179	209	12.0706
.(..(((((.((...)).)))))..).)))	chr22:42475633-42475902(+)$1	1	127	157	9.0080
.(((((.((.((......)).)).))))).	chr12:25054647-25054919(-)$1	1	71	101	14.0636
(((((((((.((......)).)))))).))	chr1:112233855-112234085(+)$1	1	32	62	14.6750
)((((((...((......))....))))))	chr6:32157579-32157840(-)$1	1	139	169	14.3065
(((((((..(((((...)))))))))))))	chr10:98346473-98346743(-)$1	1	158	188	8.5787
..((((....((......))......))))	chr16:75498330-75498611(-)$1	1	201	231	11.1642
((((((((.(((......))).)))))..)	chr6:2900654-2900956(-)$1	1	163	193	13.5914
(.((..(((.((......)).)))..)).)	chr7:128097173-128097533(+)$1	1	29	59	13.7357
(((...((((((......)))))).)))))	chr19:2236052-2236281(-)$1	1	71	101	13.4405
(((...((((((......)))))).)))))	chr19:2236081-2236355(-)$1	1	145	175	13.4405
.((((.((((((......)))))).)))).	chr6:10749754-10749969(+)$1	1	166	196	12.9366
..(((((((.((......))))))))))))	chr2:54197731-54197981(-)$1	1	164	194	13.7634
(((....(((((......))))).......	chr7:87846349-87846606(-)$1	1	56	86	11.6629
((.(((((((((......))))))))))))	chr12:121148201-121148544(+)$1	1	23	53	13.3014
((.((((((.((......)).)))))).))	chr11:2405799-2406099(+)$1	1	224	254	14.8649
(((((.(((.((......)).)))))))))	chr7:129843715-129843988(-)$1	1	15	45	14.2038
(...(((((.((......))))))).))..	chr16:57279073-57279391(+)$1	1	76	106	13.6935
(((..(.(((((......))))).)..)))	chrX:20284609-20284862(-)$1	1	166	196	13.4793
((...((((.((......))))))...)))	chr6:42984771-42985144(+)$1	1	275	305	14.2395
(((((((((.((......)).))))))..)	chr1:19949863-19950139(+)$1	1	134	164	14.3231
((((.(((..((......))..)))))))(	chr12:93862933-93863240(+)$1	1	55	85	13.5888
(.((((((((((((...)))))))))))).	chr22:50873157-50873540(+)$1	1	219	249	10.3203
.(((((((...(((......))))))))))	chr7:65338240-65338499(+)$1	1	108	138	10.8781
((((...(((((......).))))..))))	chr4:103790087-103790445(+)$1	1	280	310	12.6329
((((((.((.((......)).)).))))))	chr8:98788044-98788287(+)$1	1	101	131	13.4394
.(.(((((..((...))....))))).).)	chr9:37784677-37784988(-)$1	1	203	233	9.7696
((((((((...(......)...)))))).(	chr20:43530070-43530299(+)$1	1	90	120	11.1232
((((.((.((((......)))))).)))).	chr22:50018375-50018652(-)$1	1	35	65	11.2822

#PSSM
e : 0.19	d : 0.17	[ : 0.13	f : 0.10	# : 0.04	b : 0.04	$ : 0.04	c : 0.04	g : 0.04	! : 0.04	" : 0.02	h : 0.02	: : 0.02	= : 0.02	% : 0.02	E : 0.02	
e : 0.26	d : 0.19	f : 0.15	[ : 0.06	b : 0.04	$ : 0.04	" : 0.04	a : 0.04	g : 0.04	h : 0.02	= : 0.02	! : 0.02	% : 0.02	E : 0.02	
e : 0.19	f : 0.19	d : 0.17	[ : 0.08	b : 0.06	" : 0.06	g : 0.06	$ : 0.04	= : 0.04	h : 0.02	: : 0.02	! : 0.02	
e : 0.26	f : 0.19	! : 0.13	" : 0.10	d : 0.08	= : 0.04	g : 0.04	h : 0.02	$ : 0.02	: : 0.02	b : 0.02	# : 0.02	i : 0.02	
e : 0.23	f : 0.19	! : 0.13	" : 0.10	[ : 0.08	= : 0.04	d : 0.04	g : 0.04	h : 0.02	$ : 0.02	: : 0.02	# : 0.02	i : 0.02	
e : 0.28	f : 0.17	g : 0.08	" : 0.08	d : 0.06	c : 0.04	a : 0.04	b : 0.04	= : 0.04	[ : 0.04	h : 0.02	! : 0.02	# : 0.02	i : 0.02	
f : 0.26	e : 0.19	[ : 0.10	g : 0.08	c : 0.08	# : 0.06	d : 0.04	" : 0.04	b : 0.04	= : 0.04	i : 0.02	
e : 0.28	f : 0.21	g : 0.08	c : 0.08	d : 0.06	[ : 0.06	# : 0.04	" : 0.04	b : 0.04	! : 0.02	i : 0.02	= : 0.02	
f : 0.17	e : 0.17	d : 0.13	" : 0.10	[ : 0.08	! : 0.08	g : 0.06	# : 0.04	b : 0.04	c : 0.04	i : 0.02	= : 0.02	
[ : 0.26	e : 0.15	c : 0.10	f : 0.10	" : 0.08	d : 0.08	! : 0.06	g : 0.04	# : 0.04	i : 0.02	= : 0.02	
b : 0.39	c : 0.10	f : 0.10	e : 0.10	d : 0.08	" : 0.06	g : 0.04	a : 0.02	[ : 0.02	i : 0.02	= : 0.02	
b : 0.39	c : 0.15	f : 0.10	e : 0.10	d : 0.06	a : 0.06	g : 0.04	o : 0.02	i : 0.02	= : 0.02	
o : 0.86	c : 0.04	l : 0.04	e : 0.02	= : 0.02	
o : 0.86	c : 0.04	l : 0.04	e : 0.02	= : 0.02	
o : 0.89	l : 0.10	
o : 0.89	l : 0.06	b : 0.04	
o : 0.89	l : 0.06	b : 0.04	
o : 0.86	c : 0.02	a : 0.02	] : 0.02	e : 0.02	= : 0.02	4 : 0.02	
b : 0.34	c : 0.13	e : 0.13	f : 0.10	d : 0.08	a : 0.06	g : 0.04	i : 0.02	= : 0.02	o : 0.02	4 : 0.02	
b : 0.34	e : 0.15	c : 0.13	f : 0.10	d : 0.08	g : 0.04	i : 0.02	= : 0.02	o : 0.02	] : 0.02	4 : 0.02	3 : 0.02	
e : 0.19	] : 0.19	c : 0.13	d : 0.13	f : 0.10	g : 0.06	4 : 0.06	6 : 0.02	i : 0.02	2 : 0.02	= : 0.02	3 : 0.02	
e : 0.28	f : 0.19	d : 0.13	g : 0.06	] : 0.06	c : 0.06	4 : 0.04	b : 0.04	6 : 0.02	i : 0.02	2 : 0.02	= : 0.02	3 : 0.02	
e : 0.30	f : 0.23	c : 0.10	b : 0.08	g : 0.06	4 : 0.04	= : 0.04	d : 0.04	] : 0.02	6 : 0.02	i : 0.02	
f : 0.26	e : 0.19	g : 0.08	c : 0.08	] : 0.08	4 : 0.04	b : 0.04	= : 0.04	d : 0.04	3 : 0.02	2 : 0.02	6 : 0.02	> : 0.02	i : 0.02	
e : 0.21	f : 0.21	] : 0.15	g : 0.08	2 : 0.06	c : 0.04	a : 0.04	3 : 0.04	= : 0.04	d : 0.02	6 : 0.02	> : 0.02	i : 0.02	
f : 0.26	e : 0.19	d : 0.10	3 : 0.06	2 : 0.06	b : 0.04	] : 0.04	= : 0.04	g : 0.04	h : 0.02	c : 0.02	a : 0.02	6 : 0.02	> : 0.02	i : 0.02	
f : 0.26	e : 0.17	d : 0.15	b : 0.08	] : 0.06	3 : 0.04	2 : 0.04	= : 0.04	g : 0.04	h : 0.02	c : 0.02	> : 0.02	i : 0.02	
e : 0.21	d : 0.19	f : 0.17	] : 0.10	2 : 0.06	= : 0.04	b : 0.04	3 : 0.02	h : 0.02	c : 0.02	: : 0.02	> : 0.02	g : 0.02	a : 0.02	
d : 0.26	e : 0.26	f : 0.13	] : 0.08	2 : 0.06	: : 0.04	= : 0.04	b : 0.02	h : 0.02	c : 0.02	> : 0.02	g : 0.02	
e : 0.26	f : 0.21	d : 0.19	] : 0.10	b : 0.04	c : 0.04	h : 0.02	3 : 0.02	= : 0.02	> : 0.02	2 : 0.02	g : 0.02	

#score	582.9054982017367
#seq	46
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_transcript_m3_run2.txt

#BEAR
=========qqqqqqqq=========	chr21:46495146-46495456(+)$1	310	42	68	17.0946
iiiiiiiiiqqqqqqqqiiiiiiiii	chr19:13261642-13261967(+)$1	325	170	196	16.5060
cc[ffffffqqqqqqqqffffff]cc	chr4:717829-718118(+)$1	289	216	242	15.9221
fff"""cccqqqqqqqqccc4444ff	chr16:88538465-88538747(+)$1	282	103	129	17.1562
eeeee[cccqqqqqqqqccc]eeeee	chr2:236506673-236507010(+)$1	337	298	324	16.3753
c####ddddqqqqqqqqdddd22ccc	chr19:34880175-34880390(+)$1	215	9	35	15.7608
ccc"""cccqqqqqqqqccc22ccc]	chr3:49050061-49050364(+)$1	303	194	220	17.1771
e"""eeeeeqqqqqqqqeeeee333e	chr19:1409915-1410181(+)$1	266	125	151	17.0600
!!gggggggqqqqqqqqgggggggdd	chr22:32026236-32026566(-)$1	330	218	244	16.6215
!bb[eeeeeqqqqqqqqeeeee]bb2	chr7:5635220-5635600(+)$1	380	216	242	15.5340
$$gggggggqqqqqqqqggggggg44	chr1:171750759-171751188(+)$1	429	181	207	16.3208
gggg!!cccqqqqqqqqccc22gggg	chr19:45605762-45606042(+)$1	280	61	87	17.2687
eee[eeeeeqqqqqqqqeeeeeeeee	chr10:126777034-126777335(-)$1	301	171	197	16.0808
eeeee[cccqqqqqqqqccceeeeec	chr17:76110838-76111184(-)$1	346	92	118	16.4415
ff[ffffffqqqqqqqqfffffffff	chr12:133138813-133139123(+)$1	310	43	69	15.6037
"""ffffffqqqqqqqqffffff333	chr15:68499707-68500064(-)$1	357	189	215	16.1556
iiiiiiiiiqqqqqqqqiiiiiiiii	chr12:122235384-122235668(-)$1	284	55	81	16.5060
"dddd[cccqqqqqqqqcccdddd]c	chr13:114163957-114164233(+)$1	276	116	142	16.0703
ccc"""cccqqqqqqqqccc22ccc]	chr3:49050189-49050477(+)$1	288	66	92	17.1771
[a[ffffffqqqqqqqqffffff]a]	chr19:2270599-2270843(+)$1	244	42	68	15.9759
dddd[ddddqqqqqqqqdddddddd]	chr2:97557563-97557849(-)$1	286	205	231	15.0181
ccc[eeeeeqqqqqqqqeeeee]ccc	chr17:79817206-79817476(-)$1	270	49	75	16.7092
eegggggggqqqqqqqqgggggggFF	chr3:126712058-126712356(+)$1	298	222	248	15.8634
fff"""cccqqqqqqqqccc666666	chr19:802138-802409(+)$1	271	146	172	14.6592
ee!!eeeeeqqqqqqqqeeeeeeeee	chr5:34190046-34190274(-)$1	228	94	120	16.3605
d!!ffffffqqqqqqqqffffff22d	chr7:2237268-2237600(-)$1	332	49	75	15.6418
ggg[bb[bbqqqqqqqqbbbbggggg	chr19:955581-955880(+)$1	299	225	251	14.3991
dd[dddd[aqqqqqqqqa]ddddddd	chr11:65192589-65192843(+)$1	254	37	63	14.9746
ffffff!!aqqqqqqqqa22ffffff	chr11:66393490-66393790(+)$1	300	170	196	14.9134
fff[eeeeeqqqqqqqqeeeeeffff	chr17:79232271-79232565(-)$1	294	248	274	16.3005
ccc[eeeeeqqqqqqqqeeeee]ccc	chr22:19431683-19432009(-)$1	326	87	113	16.7092
dddd[ddddqqqqqqqqdddd]dddd	chr2:132044786-132045039(+)$1	253	22	48	15.0462
fff"""cccqqqqqqqqccc]fffff	chr20:62334256-62334503(-)$1	247	34	60	17.0430
gggggg!!aqqqqqqqqa22gggggg	chr5:34191854-34192081(-)$1	227	142	168	15.9180
gggg"""bbqqqqqqqqbb333gggg	chr5:21483438-21483709(+)$1	271	28	54	15.8641
a[gggggggqqqqqqqqggggggg]a	chr4:901382-901647(-)$1	265	23	49	16.7011
cc[ffffffqqqqqqqqffffff]cc	chr22:19877976-19878242(-)$1	266	17	43	15.9221
gg####cccqqqqqqqqccc22gggg	chr17:62501609-62501960(-)$1	351	42	68	17.2705
dddd!!cccqqqqqqqqcccdddd:E	chr7:50860172-50860453(-)$1	281	41	67	14.6159
ee####cccqqqqqqqqccceeeee:	chr2:130894197-130894486(+)$1	289	29	55	16.1483
d[bb!!cccqqqqqqqqccc22bb]d	chr7:104654952-104655211(+)$1	259	138	164	15.7666
ggggeeeeeqqqqqqqqeeeee333g	chr16:88995864-88996126(-)$1	262	24	50	17.0388
ggggeeeeeqqqqqqqqeeeee22gg	chr19:802749-803034(+)$1	285	52	78	16.3842
!!gggggggqqqqqqqqggggggg22	chr2:97525513-97525824(-)$1	311	95	121	16.5892
dd!!eeeeeqqqqqqqqeeeee333d	chr7:150798069-150798341(+)$1	272	209	235	17.1187
ddd[ccc[aqqqqqqqqa]cccdddd	chr12:122525208-122525470(+)$1	262	23	49	15.6524
ffff!!cccqqqqqqqqccc]fffff	chr6:52227611-52227933(+)$1	322	12	38	16.8099
ee!!eeeeeqqqqqqqqeeeee4444	chr22:19107883-19108176(-)$1	293	163	189	16.9312
bb####cccqqqqqqqqccc333bb]	chr12:133319454-133319741(-)$1	287	21	47	16.5930
ggg[cccbbqqqqqqqqbb]ccc22g	chr16:85020579-85020903(-)$1	324	280	306	15.1784
ffgggggggqqqqqqqqggggggg:F	chr7:150078267-150078598(+)$1	331	88	114	15.3683
ddd"""cccqqqqqqqqccc4444dd	chr8:144355524-144355844(+)$1	320	256	282	17.0572
ggccc[cccqqqqqqqqccc22ccc>	chr7:1474299-1474624(-)$1	325	198	224	16.4806
f[gggggggqqqqqqqqggggggg]f	chr5:884121-884411(-)$1	290	111	137	16.7605
dddd[ddddqqqqqqqqdddd4444d	chr19:54970742-54971012(+)$1	270	20	46	15.5479
ddddd:cccqqqqqqqqcccffffff	chr5:1329222-1329578(-)$1	356	53	79	15.0560
=========qqqqqqqq=========	chr7:1497548-1497805(-)$1	257	52	78	17.0946
dddd!!cccqqqqqqqqccc]dddd:	chr3:195634210-195634532(-)$1	322	247	273	15.5588
ff####cccqqqqqqqqcccffffff	chr5:882438-882781(-)$1	343	232	258	16.9783
$$$$$ddddqqqqqqqqddddcccff	chr22:50022269-50022539(-)$1	270	39	65	14.6980
ddddeeeeeqqqqqqqqeeeee]ddd	chr1:1208155-1208446(-)$1	291	175	201	15.8560
ddddeeeeeqqqqqqqqeeeee4444	chr16:17231274-17231532(+)$1	258	64	90	16.2728
!dddd[cccqqqqqqqqcccdddd22	chr22:50034924-50035185(-)$1	261	90	116	15.8510
ddd[eeeeeqqqqqqqqeeeee]ddd	chr5:154136383-154136688(+)$1	305	15	41	16.2630
ggggggg[aqqqqqqqqagggggggb	chr2:236403638-236403910(+)$1	272	230	256	16.3921
bb!!eeeeeqqqqqqqqeeeee22bb	chr11:779091-779384(+)$1	293	119	145	15.5561
ffff[ddddqqqqqqqqdddd]ffff	chr1:1280690-1280965(-)$1	275	46	72	15.4075
[a[ffffffqqqqqqqqffffff]a]	chr7:1065421-1065695(-)$1	274	85	111	15.9759

#otherMatches

#Seq PSSM
CUGGGGACGGUAGGCUAUGUCCCUGG	chr21:46495146-46495456(+)$1	310	42	68	17.0946
GGGGGCCCUCUGUGUGUGGGGUCUCC	chr19:13261642-13261967(+)$1	325	170	196	16.5060
UCAGGGGCUACAGCAAAGGCCCCGGA	chr4:717829-718118(+)$1	289	216	242	15.9221
GCCUCAGUGUCCACACCCACAAGUGG	chr16:88538465-88538747(+)$1	282	103	129	17.1562
cuuacuuauuuuuacauguauguaag	chr2:236506673-236507010(+)$1	337	298	324	16.3753
GCUCCCAGAAUGAGUCCUCUGCACUC	chr19:34880175-34880390(+)$1	215	9	35	15.7608
ACCAGACCCUGUUUCCUGGGAAGGUG	chr3:49050061-49050364(+)$1	303	194	220	17.1771
GCCGUCCAGCUGCUGCCCUGGGAAUC	chr19:1409915-1410181(+)$1	266	125	151	17.0600
AGGCCGCCUGGGGAAGAGGGCGGCGC	chr22:32026236-32026566(-)$1	330	218	244	16.6215
AGAAGUCGCAGAAGUAGGUGGCCUUG	chr7:5635220-5635600(+)$1	380	216	242	15.5340
GGUCAUUCCUGGGGUUUGGAGUGGGG	chr1:171750759-171751188(+)$1	429	181	207	16.3208
GCCUCCCCCGGCUGUAAGGGUUAGGC	chr19:45605762-45606042(+)$1	280	61	87	17.2687
UCAAUCCUGAGGUUAUCCGGGGUGAU	chr10:126777034-126777335(-)$1	301	171	197	16.0808
CUGGGUGGCAUUUCAGAGCCCCCAGG	chr17:76110838-76111184(-)$1	346	92	118	16.4415
GGUGAGAGGUUCCUGUCCUUCUUUCU	chr12:133138813-133139123(+)$1	310	43	69	15.6037
AUGAGUGGCUCUGUCCUGUCACUGCC	chr15:68499707-68500064(-)$1	357	189	215	16.1556
CGGGUGGGGUCUUUACUCCCCACCUG	chr12:122235384-122235668(-)$1	284	55	81	16.5060
UGAAGCGUGCUUUCUUCCACCUUCCC	chr13:114163957-114164233(+)$1	276	116	142	16.0703
ACCAGACCCUGUUUCCUGGGAAGGUG	chr3:49050189-49050477(+)$1	288	66	92	17.1771
UCUCGGUCGAGCUUUCCCGACUGCGU	chr19:2270599-2270843(+)$1	244	42	68	15.9759
CUGGAGGAAAUGCCUACUUUCCCAGC	chr2:97557563-97557849(-)$1	286	205	231	15.0181
CACCAGGCUAUCAGCUCAGCCUUGUG	chr17:79817206-79817476(-)$1	270	49	75	16.7092
GGCAGCUGCUGGAUGGUGCAGCUGGG	chr3:126712058-126712356(+)$1	298	222	248	15.8634
UCUUGAGCCAGGGCCAGGGCAGGAGU	chr19:802138-802409(+)$1	271	146	172	14.6592
CAAAGGGGUGACUACCUGCUCCUGGG	chr5:34190046-34190274(-)$1	228	94	120	16.3605
GGACCUGGGGGCUGGGACCCGGGGGC	chr7:2237268-2237600(-)$1	332	49	75	15.6418
UCUACGUGCGGUUCUUAGCCGGGggg	chr19:955581-955880(+)$1	299	225	251	14.3991
GUUGCUUAGAAACUUUCCAAAGUGCU	chr11:65192589-65192843(+)$1	254	37	63	14.9746
GUUUGCUGUGGUGUGGGAAUGUAGAC	chr11:66393490-66393790(+)$1	300	170	196	14.9134
CUGCGCCGCCUCUGCCUGCGGCCGGU	chr17:79232271-79232565(-)$1	294	248	274	16.3005
UUUGCACAGCAAUCCCUCUGUGAGAG	chr22:19431683-19432009(-)$1	326	87	113	16.7092
GCUGGAGGGAACGUCAACCCUGCAGU	chr2:132044786-132045039(+)$1	253	22	48	15.0462
caaaguggcaaaugugagcuguuguc	chr20:62334256-62334503(-)$1	247	34	60	17.0430
GGAUCUGAGGAGGAGAACAGGGGUCC	chr5:34191854-34192081(-)$1	227	142	168	15.9180
CCGUGAGGGUCUGCAGUCCGAGAUGG	chr5:21483438-21483709(+)$1	271	28	54	15.8641
UGUGCGGCUGAGAGCUGAGCUGCAGG	chr4:901382-901647(-)$1	265	23	49	16.7011
CUGGGGAUGGGUGGGAGCAUCCUAAG	chr22:19877976-19878242(-)$1	266	17	43	15.9221
GUAUUGUGCGGAUGAAAGCGGGACGC	chr17:62501609-62501960(-)$1	351	42	68	17.2705
GGGACAGUGGUGCCAGACACUCCCAA	chr7:50860172-50860453(-)$1	281	41	67	14.6159
CUCUGGGCACCCAUUGAUGCAGGUCA	chr2:130894197-130894486(+)$1	289	29	55	16.1483
GACGUUGACUCUCAGGUGUCUUUGCC	chr7:104654952-104655211(+)$1	259	138	164	15.7666
CGCAGCUGUGGGUAUUGGUAGUUUUU	chr16:88995864-88996126(-)$1	262	24	50	17.0388
UCAGUCUAGUGCAAUUCUUAGAAGUU	chr19:802749-803034(+)$1	285	52	78	16.3842
AAGGGUGGGUGGGGCCUCCCACUUGG	chr2:97525513-97525824(-)$1	311	95	121	16.5892
ACCAAGGAGCCUCCUUACUUCUGUAG	chr7:150798069-150798341(+)$1	272	209	235	17.1187
cacaucaggucuuauauugugagugc	chr12:122525208-122525470(+)$1	262	23	49	15.6524
AGUAGGGUGGGUCUAGGCAUGUGCUU	chr6:52227611-52227933(+)$1	322	12	38	16.8099
UGCCCCCUGCCCAUCCCUAGGGAAUC	chr22:19107883-19108176(-)$1	293	163	189	16.9312
CAGUUGCUAUCUAGAGUUAGAAAUGG	chr12:133319454-133319741(-)$1	287	21	47	16.5930
GGAGUGGCAGUCACUGAUGUCCAGGU	chr16:85020579-85020903(-)$1	324	280	306	15.1784
GUACCUCAGGAUCAUGGCUGGGGUUG	chr7:150078267-150078598(+)$1	331	88	114	15.3683
UGAAAAGCUCACAGCCAGGCACUGUU	chr8:144355524-144355844(+)$1	320	256	282	17.0572
GCCCAGGGCGGAUUGUGGCCAGUGGA	chr7:1474299-1474624(-)$1	325	198	224	16.4806
CAGCUCUGUGUCUGAGGGCAGGGUCG	chr5:884121-884411(-)$1	290	111	137	16.7605
UCCACGUGAGGUCAUGGUCACAGCAU	chr19:54970742-54971012(+)$1	270	20	46	15.5479
CCUGUCCACCAAACAGAGUGUUUUCA	chr5:1329222-1329578(-)$1	356	53	79	15.0560
CAGCCUCGGCCCCUGCUCUGAGGUUG	chr7:1497548-1497805(-)$1	257	52	78	17.0946
ACCCCUGUCCCGAACCAGACUGGGUG	chr3:195634210-195634532(-)$1	322	247	273	15.5588
GUGUUGGGAAGUUGUGGUCUGCGUGG	chr5:882438-882781(-)$1	343	232	258	16.9783
CAUUAACUCGAAUUACGGAGUAAGUC	chr22:50022269-50022539(-)$1	270	39	65	14.6980
GGAACCAGACUGUGUAAUCUGGCUUC	chr1:1208155-1208446(-)$1	291	175	201	15.8560
CAGUGGCACUCAUAUUUGUGCUCUCU	chr16:17231274-17231532(+)$1	258	64	90	16.2728
CAGCAUGGGUGCACCUUUUCUGCUUG	chr22:50034924-50035185(-)$1	261	90	116	15.8510
GGCACCUUCCGCCUUAAGAAGGAGCC	chr5:154136383-154136688(+)$1	305	15	41	16.2630
GCGUCUUGCUGGACGUUGAAGACGUG	chr2:236403638-236403910(+)$1	272	230	256	16.3921
AGCUUUCUGGAUCUGCACAGGAUCUU	chr11:779091-779384(+)$1	293	119	145	15.5561
AGCUGCCGUGAGUUUCAGCGGAGGCU	chr1:1280690-1280965(-)$1	275	46	72	15.4075
ACUGCAGCUGAAGCUUGAGCUGCUGC	chr7:1065421-1065695(-)$1	274	85	111	15.9759

#DB
(((((((((........)))))))))	chr21:46495146-46495456(+)$1	1	42	68	17.0946
(((((((((........)))))))))	chr19:13261642-13261967(+)$1	1	170	196	16.5060
((.((((((........)))))).))	chr4:717829-718118(+)$1	1	216	242	15.9221
(((...(((........)))....))	chr16:88538465-88538747(+)$1	1	103	129	17.1562
(((((.(((........))).)))))	chr2:236506673-236507010(+)$1	1	298	324	16.3753
(....((((........))))..)))	chr19:34880175-34880390(+)$1	1	9	35	15.7608
(((...(((........)))..))).	chr3:49050061-49050364(+)$1	1	194	220	17.1771
(...(((((........)))))...)	chr19:1409915-1410181(+)$1	1	125	151	17.0600
..(((((((........)))))))))	chr22:32026236-32026566(-)$1	1	218	244	16.6215
.((.(((((........))))).)).	chr7:5635220-5635600(+)$1	1	216	242	15.5340
..(((((((........)))))))..	chr1:171750759-171751188(+)$1	1	181	207	16.3208
((((..(((........)))..))))	chr19:45605762-45606042(+)$1	1	61	87	17.2687
(((.(((((........)))))))))	chr10:126777034-126777335(-)$1	1	171	197	16.0808
(((((.(((........)))))))))	chr17:76110838-76111184(-)$1	1	92	118	16.4415
((.((((((........)))))))))	chr12:133138813-133139123(+)$1	1	43	69	15.6037
...((((((........))))))...	chr15:68499707-68500064(-)$1	1	189	215	16.1556
(((((((((........)))))))))	chr12:122235384-122235668(-)$1	1	55	81	16.5060
.((((.(((........))))))).)	chr13:114163957-114164233(+)$1	1	116	142	16.0703
(((...(((........)))..))).	chr3:49050189-49050477(+)$1	1	66	92	17.1771
.(.((((((........)))))).).	chr19:2270599-2270843(+)$1	1	42	68	15.9759
((((.((((........)))))))).	chr2:97557563-97557849(-)$1	1	205	231	15.0181
(((.(((((........))))).)))	chr17:79817206-79817476(-)$1	1	49	75	16.7092
))(((((((........)))))))))	chr3:126712058-126712356(+)$1	1	222	248	15.8634
(((...(((........)))......	chr19:802138-802409(+)$1	1	146	172	14.6592
((..(((((........)))))))))	chr5:34190046-34190274(-)$1	1	94	120	16.3605
(..((((((........))))))..)	chr7:2237268-2237600(-)$1	1	49	75	15.6418
(((.((.((........)))))))))	chr19:955581-955880(+)$1	1	225	251	14.3991
((.((((.(........).)))))))	chr11:65192589-65192843(+)$1	1	37	63	14.9746
((((((..(........)..))))))	chr11:66393490-66393790(+)$1	1	170	196	14.9134
(((.(((((........)))))))))	chr17:79232271-79232565(-)$1	1	248	274	16.3005
(((.(((((........))))).)))	chr22:19431683-19432009(-)$1	1	87	113	16.7092
((((.((((........)))).))))	chr2:132044786-132045039(+)$1	1	22	48	15.0462
(((...(((........))).)))))	chr20:62334256-62334503(-)$1	1	34	60	17.0430
((((((..(........)..))))))	chr5:34191854-34192081(-)$1	1	142	168	15.9180
((((...((........))...))))	chr5:21483438-21483709(+)$1	1	28	54	15.8641
(.(((((((........))))))).)	chr4:901382-901647(-)$1	1	23	49	16.7011
((.((((((........)))))).))	chr22:19877976-19878242(-)$1	1	17	43	15.9221
((....(((........)))..))))	chr17:62501609-62501960(-)$1	1	42	68	17.2705
((((..(((........))))))).(	chr7:50860172-50860453(-)$1	1	41	67	14.6159
((....(((........)))))))).	chr2:130894197-130894486(+)$1	1	29	55	16.1483
(.((..(((........)))..)).)	chr7:104654952-104655211(+)$1	1	138	164	15.7666
(((((((((........)))))...)	chr16:88995864-88996126(-)$1	1	24	50	17.0388
(((((((((........)))))..))	chr19:802749-803034(+)$1	1	52	78	16.3842
..(((((((........)))))))..	chr2:97525513-97525824(-)$1	1	95	121	16.5892
((..(((((........)))))...)	chr7:150798069-150798341(+)$1	1	209	235	17.1187
(((.(((.(........).)))))))	chr12:122525208-122525470(+)$1	1	23	49	15.6524
((((..(((........))).)))))	chr6:52227611-52227933(+)$1	1	12	38	16.8099
((..(((((........)))))....	chr22:19107883-19108176(-)$1	1	163	189	16.9312
((....(((........)))...)).	chr12:133319454-133319741(-)$1	1	21	47	16.5930
(((.(((((........)).)))..)	chr16:85020579-85020903(-)$1	1	280	306	15.1784
))(((((((........))))))).(	chr7:150078267-150078598(+)$1	1	88	114	15.3683
(((...(((........)))....))	chr8:144355524-144355844(+)$1	1	256	282	17.0572
(((((.(((........)))..))).	chr7:1474299-1474624(-)$1	1	198	224	16.4806
(.(((((((........))))))).)	chr5:884121-884411(-)$1	1	111	137	16.7605
((((.((((........))))....)	chr19:54970742-54971012(+)$1	1	20	46	15.5479
))))).(((........)))((((((	chr5:1329222-1329578(-)$1	1	53	79	15.0560
(((((((((........)))))))))	chr7:1497548-1497805(-)$1	1	52	78	17.0946
((((..(((........))).)))).	chr3:195634210-195634532(-)$1	1	247	273	15.5588
((....(((........)))))))))	chr5:882438-882781(-)$1	1	232	258	16.9783
.....((((........)))))))))	chr22:50022269-50022539(-)$1	1	39	65	14.6980
(((((((((........))))).)))	chr1:1208155-1208446(-)$1	1	175	201	15.8560
(((((((((........)))))....	chr16:17231274-17231532(+)$1	1	64	90	16.2728
.((((.(((........)))))))..	chr22:50034924-50035185(-)$1	1	90	116	15.8510
(((.(((((........))))).)))	chr5:154136383-154136688(+)$1	1	15	41	16.2630
(((((((.(........))))))))(	chr2:236403638-236403910(+)$1	1	230	256	16.3921
((..(((((........)))))..))	chr11:779091-779384(+)$1	1	119	145	15.5561
((((.((((........)))).))))	chr1:1280690-1280965(-)$1	1	46	72	15.4075
.(.((((((........)))))).).	chr7:1065421-1065695(-)$1	1	85	111	15.9759

#PSSM
d : 0.22	f : 0.16	g : 0.14	e : 0.11	c : 0.10	! : 0.05	= : 0.02	i : 0.02	$ : 0.02	" : 0.02	[ : 0.02	b : 0.02	a : 0.01	
d : 0.22	f : 0.14	g : 0.14	e : 0.10	c : 0.08	! : 0.04	b : 0.04	[ : 0.04	= : 0.02	i : 0.02	" : 0.02	$ : 0.02	a : 0.02	# : 0.01	
g : 0.22	d : 0.19	f : 0.10	[ : 0.08	# : 0.07	c : 0.07	! : 0.07	e : 0.04	= : 0.02	i : 0.02	" : 0.02	b : 0.02	$ : 0.01	
g : 0.19	d : 0.16	f : 0.14	[ : 0.13	" : 0.10	# : 0.07	! : 0.05	= : 0.02	i : 0.02	e : 0.02	b : 0.01	c : 0.01	$ : 0.01	
e : 0.25	g : 0.13	f : 0.11	" : 0.10	# : 0.07	! : 0.07	d : 0.05	[ : 0.05	c : 0.04	= : 0.02	i : 0.02	b : 0.01	$ : 0.01	
e : 0.22	g : 0.13	f : 0.11	" : 0.10	d : 0.10	[ : 0.07	! : 0.07	# : 0.05	= : 0.02	i : 0.02	c : 0.02	b : 0.01	: : 0.01	
c : 0.33	e : 0.22	g : 0.11	f : 0.10	d : 0.10	= : 0.02	i : 0.02	! : 0.02	[ : 0.01	" : 0.01	
c : 0.30	e : 0.22	f : 0.10	g : 0.10	d : 0.08	b : 0.04	[ : 0.04	= : 0.02	i : 0.02	! : 0.02	
c : 0.30	e : 0.22	f : 0.10	g : 0.10	d : 0.08	a : 0.07	b : 0.04	= : 0.02	i : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.30	e : 0.22	f : 0.10	g : 0.10	d : 0.08	a : 0.07	b : 0.04	= : 0.02	i : 0.02	
c : 0.30	e : 0.22	g : 0.11	f : 0.10	d : 0.08	b : 0.04	= : 0.02	i : 0.02	] : 0.02	2 : 0.02	
c : 0.32	e : 0.22	g : 0.11	f : 0.10	d : 0.10	= : 0.02	i : 0.02	2 : 0.02	b : 0.01	3 : 0.01	] : 0.01	
e : 0.25	f : 0.14	d : 0.14	g : 0.13	2 : 0.08	] : 0.05	= : 0.02	i : 0.02	4 : 0.02	3 : 0.02	c : 0.02	6 : 0.01	b : 0.01	
e : 0.26	f : 0.17	g : 0.14	2 : 0.10	d : 0.08	4 : 0.04	c : 0.04	= : 0.02	i : 0.02	] : 0.02	3 : 0.02	6 : 0.01	
f : 0.20	g : 0.19	d : 0.11	4 : 0.07	e : 0.07	c : 0.07	] : 0.07	3 : 0.05	2 : 0.04	= : 0.02	i : 0.02	6 : 0.01	b : 0.01	
g : 0.19	d : 0.14	f : 0.11	c : 0.10	4 : 0.07	e : 0.07	] : 0.05	3 : 0.05	2 : 0.05	b : 0.04	= : 0.02	i : 0.02	6 : 0.01	
f : 0.14	d : 0.13	c : 0.11	g : 0.10	e : 0.07	3 : 0.05	4 : 0.05	] : 0.05	2 : 0.05	b : 0.04	= : 0.02	i : 0.02	a : 0.02	: : 0.02	F : 0.01	6 : 0.01	
f : 0.16	d : 0.16	g : 0.11	c : 0.10	] : 0.08	e : 0.05	2 : 0.04	4 : 0.04	= : 0.02	i : 0.02	F : 0.02	: : 0.02	b : 0.02	3 : 0.01	6 : 0.01	a : 0.01	E : 0.01	> : 0.01	

#score	1097.1263301538472
#seq	68
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_CDS_m2_run2.txt

#BEAR
ddd[ddddtttttttttttdddd]dddd	chr17:42397702-42397923(-)$1	221	146	174	22.0206
b[ddddccctttttttttttccc]dddd	chr17:73774925-73775211(-)$1	286	191	219	22.5523
ddd[ddddvvvvvvvvvvvvvdddd22d	chr8:144520096-144520402(-)$1	306	258	286	23.1234
a"""ddddtttttttttttdddd]a22c	chr19:799297-799545(+)$1	248	153	181	22.7163
eeeeeeeeuuuuuuuuuuuueeeee22e	chr6:160509986-160510266(+)$1	280	55	83	23.9406
ddd[ddddvvvvvvvvvvvvvddddddd	chr1:19491362-19491644(-)$1	282	56	84	22.9466
d"""dddduuuuuuuuuuuudddd]ddd	chr17:25638423-25638683(+)$1	260	33	61	23.6475
$$ffffffuuuuuuuuuuuuffffff33	chr6:160204963-160205244(-)$1	281	110	138	24.1144
eeeeeyyyyyyyyyyyyyyyyeeeee::	chr1:185270053-185270315(-)$1	262	103	131	20.3235
[gggggggyyyyyyyyyyyyyyyygggg	chr17:2238868-2239138(-)$1	270	9	37	21.1602
dddd[bbvvvvvvvvvvvvvbb333ddd	chr18:8633061-8633331(+)$1	270	160	188	22.6183
ffffyyyyyyyyyyyyyyyyffffffcc	chr20:33059095-33059371(+)$1	276	61	89	20.8061
ccc[dddduuuuuuuuuuuuddddccc5	chrX:153225733-153226023(-)$1	290	36	64	23.0818
[gggggggtttttttttttggggggg22	chr14:105225591-105225871(+)$1	280	63	91	23.3004
GGeeeeewwwwwwwwwwwwwweeeee::	chr22:22042856-22043132(+)$1	276	204	232	20.7159
ggggyyyyyyyyyyyyyyyyggggggg:	chr8:146062617-146062927(+)$1	310	134	162	21.0242
c[ffffffvvvvvvvvvvvvvffffff]	chr14:35872460-35872721(-)$1	261	210	238	23.8365
iiiiiiyyyyyyyyyyyyyyyyiiiiii	chr22:19130022-19130305(-)$1	283	60	88	22.1009
d[bbddddvvvvvvvvvvvvvdddd]bb	chr5:175956716-175956969(-)$1	253	152	180	22.8134
eggggggguuuuuuuuuuuuggggggg]	chr20:42088270-42088546(+)$1	276	123	151	24.5095
bgggggggwwwwwwwwwwwwwwgggggg	chr19:14521035-14521313(-)$1	278	143	171	22.6307
hhhhhhhhvvvvvvvvvvvvvhhhhhhh	chr8:145109481-145109731(-)$1	250	159	187	20.9548
f[fffffftttttttttttffffff]ff	chr6:32942094-32942379(+)$1	285	83	111	22.6203
""ffffffvvvvvvvvvvvvvffffff3	chr1:165872261-165872559(+)$1	298	140	168	24.1265
%%cccyyyyyyyyyyyyyyyyccc7777	chr5:138651646-138651904(+)$1	258	85	113	18.9783
[eeeee[bbtttttttttttbb]eeeee	chr17:27185432-27185724(+)$1	292	93	121	22.1477
:ggggggguuuuuuuuuuuuggggggg:	chr1:226053550-226053854(-)$1	304	54	82	22.9833
dddd[bbvvvvvvvvvvvvvbb]ddddg	chr7:100283803-100284046(-)$1	243	11	39	22.4885
"""eeeeettttttttttteeeee333e	chr12:133219790-133220041(-)$1	251	71	99	23.7352
b"""cccvvvvvvvvvvvvvccc333bb	chr7:99755458-99755721(-)$1	263	191	219	23.8355
!!cccbbvvvvvvvvvvvvvbb]ccc22	chrX:47085865-47086120(+)$1	255	178	206	23.7350
f"""ddddtttttttttttddddfffff	chr16:30724386-30724649(+)$1	263	70	98	22.4945
gggggggvvvvvvvvvvvvvgggggggC	chr16:279024-279332(-)$1	308	196	224	23.5614
!!ddddccctttttttttttccc]dddd	chr19:11143824-11144109(+)$1	285	46	74	22.9874
b[eeeeevvvvvvvvvvvvveeeee]bb	chr11:653894-654190(-)$1	296	191	219	24.0410
eeee[cccvvvvvvvvvvvvvccc]eee	chr1:28169551-28169800(+)$1	249	131	159	23.6391
!!ffffffvvvvvvvvvvvvvffffff2	chr19:1271179-1271453(+)$1	274	5	33	24.0128
!!ffffffuuuuuuuuuuuuffffff22	chr17:17717603-17717900(-)$1	297	63	91	24.2832
b[eeeeewwwwwwwwwwwwwweeeee]b	chr16:1499186-1499489(-)$1	303	163	191	23.2750
!!eeeeeuuuuuuuuuuuueeeee]aff	chr3:119153588-119153905(-)$1	317	176	204	23.4690
ggggggwwwwwwwwwwwwwwggggggg:	chr1:110559961-110560251(+)$1	290	253	281	22.3972
fbb[cccvvvvvvvvvvvvvcccbb]ff	chr16:24833241-24833540(+)$1	299	176	204	22.7802
!!fffffftttttttttttffffff22b	chr1:153948254-153948536(-)$1	282	131	159	22.8380
""eeeeewwwwwwwwwwwwwweeeee33	chr14:105916225-105916495(+)$1	270	159	187	24.0815
f[ccc!!auuuuuuuuuuuua22cccff	chr6:160489126-160489418(+)$1	292	241	269	23.8161
fffffbbvvvvvvvvvvvvvbb22ffff	chr1:1685543-1685797(-)$1	254	209	237	22.3592
$$$eeeeettttttttttteeeee333d	chr3:49051489-49051773(+)$1	284	53	81	23.0684
!ffffff[attttttttttta]ffffff	chr9:130550108-130550356(+)$1	248	58	86	23.1080
iiiiiiiiwwwwwwwwwwwwwwiiiiii	chr9:134360193-134360464(+)$1	271	216	244	22.6379
gggggggvvvvvvvvvvvvvggggggg]	chr14:105935641-105935926(+)$1	285	162	190	24.5278
bcccyyyyyyyyyyyyyyyyccc]bb33	chrX:153220869-153221172(-)$1	303	147	175	20.8845
dddd!!bbvvvvvvvvvvvvvbb]dddd	chr4:24541787-24542072(-)$1	285	169	197	22.2831
"""eeeeeuuuuuuuuuuuueeeee333	chr5:56541981-56542263(+)$1	282	38	66	25.2010
g[ddddwwwwwwwwwwwwwwdddd]ggg	chrX:153693224-153693519(+)$1	295	133	161	22.6426
e[bb[bb[attttttttttta]bb]bb]	chr11:6500088-6500353(-)$1	265	45	73	21.7786
hhheeeeeuuuuuuuuuuuueeeee:II	chr12:120992377-120992663(+)$1	286	104	132	20.2229
[eeeeewwwwwwwwwwwwwweeeee]ee	chr17:17721586-17721833(-)$1	247	168	196	22.8161
ddd[dddduuuuuuuuuuuudddd]ddd	chr18:210248-210515(+)$1	267	11	39	23.3207
$$eeeeeyyyyyyyyyyyyyyyyeeeee	chr2:32698057-32698297(+)$1	240	127	155	21.5875
"ggggggguuuuuuuuuuuuggggggg5	chr1:11860275-11860534(-)$1	259	99	127	24.1225

#otherMatches

#Seq PSSM
GACGUGGUAAAGACCCAACGCCAGGUCG	chr17:42397702-42397923(-)$1	221	146	174	22.0206
GAUUCGUCGUUAUCAGAAGUCGACCGAG	chr17:73774925-73775211(-)$1	286	191	219	22.5523
AGGAGGGCCGCCCGCCACCAAGCCUCAC	chr8:144520096-144520402(-)$1	306	258	286	23.1234
CUUCUCACUUUGCUUCUCCGUGACGCUC	chr19:799297-799545(+)$1	248	153	181	22.7163
UGAGCUGCUUCAAGGGCUCCGCAGUGUU	chr6:160509986-160510266(+)$1	280	55	83	23.9406
UGAAGCCAUUUCCCCUUUUCCUGGCUCA	chr1:19491362-19491644(-)$1	282	56	84	22.9466
AUUUCUUUCUAAAUUUUAAAAAAGUUGC	chr17:25638423-25638683(+)$1	260	33	61	23.6475
UAGACGUAUUAACUUAAUCUUAUGUUCA	chr6:160204963-160205244(-)$1	281	110	138	24.1144
AGCUUUGAGAUGCAACAAGAUGAGCUAA	chr1:185270053-185270315(-)$1	262	103	131	20.3235
GAGAUGCUGGUUUUGGGUAGGGGGAGCA	chr17:2238868-2239138(-)$1	270	9	37	21.1602
CCUCAGCUUAUUACAGAAGUGCCAAGGG	chr18:8633061-8633331(+)$1	270	160	188	22.6183
AAAGAUAAAAGUAAAUAAAACUUUCCCC	chr20:33059095-33059371(+)$1	276	61	89	20.8061
UAAUAAUCCAAUAACUUCUUGAUUUUAA	chrX:153225733-153226023(-)$1	290	36	64	23.0818
uguccugagguguucuggguuaggacuu	chr14:105225591-105225871(+)$1	280	63	91	23.3004
CCGGCCCAACCUCUCGCACACGGGCCGC	chr22:22042856-22043132(+)$1	276	204	232	20.7159
UUGUCUUCUCUGCCGCACACACAGCAGG	chr8:146062617-146062927(+)$1	310	134	162	21.0242
UGGGAGCUGGCUGUGAUCCUGAGCUCCG	chr14:35872460-35872721(-)$1	261	210	238	23.8365
CCACCCUGUAUGAGGACCCUGUGGGUGG	chr22:19130022-19130305(-)$1	283	60	88	22.1009
CGAUGCUGCCAAUGUCACCAACAGCAAU	chr5:175956716-175956969(-)$1	253	152	180	22.8134
CCCUUCAUGUGAUAAAGGUGGUGGAGGU	chr20:42088270-42088546(+)$1	276	123	151	24.5095
CCAUGUCUUGCCCUCCCCACCUAGACAU	chr19:14521035-14521313(-)$1	278	143	171	22.6307
GGGGGCAUCACACCAGGCUCCAUGCCCC	chr8:145109481-145109731(-)$1	250	159	187	20.9548
UGCAGAUGCACUUUUUCCUCAUUUGGAC	chr6:32942094-32942379(+)$1	285	83	111	22.6203
UUUCCCUUCUCUUACAGUAUUAAGGGAC	chr1:165872261-165872559(+)$1	298	140	168	24.1265
UAUGAUUUAUAUUUUAUGUCUUCACUUU	chr5:138651646-138651904(+)$1	258	85	113	18.9783
AAGGGGUCUACUUCCCUCCAAGUCCCCU	chr17:27185432-27185724(+)$1	292	93	121	22.1477
ACAGAAGGAGAAAACUGGAGCCUUCUGA	chr1:226053550-226053854(-)$1	304	54	82	22.9833
GCUGGCGGGAACAUGGGGAACGGCGGCG	chr7:100283803-100284046(-)$1	243	11	39	22.4885
AUCAUGUGCCUGCCUCCCACACAUCUGG	chr12:133219790-133220041(-)$1	251	71	99	23.7352
AUGAGGUCAUCUUCCCACUCACCGUUUC	chr7:99755458-99755721(-)$1	263	191	219	23.8355
UACCGGCCCCCUGACAUCCUGCUUGGGU	chrX:47085865-47086120(+)$1	255	178	206	23.7350
GUUUAGCAUGUCUUCCCUUUGCUCUCUU	chr16:30724386-30724649(+)$1	263	70	98	22.4945
GCGCCGGGCCUUUGUCUAAGCCGGUGCG	chr16:279024-279332(-)$1	308	196	224	23.5614
ACGCACAGCACACCUCUCCAGCUAGUGU	chr19:11143824-11144109(+)$1	285	46	74	22.9874
ACAAGGUCAACUACUGCUCCACCUUCUG	chr11:653894-654190(-)$1	296	191	219	24.0410
GAACCCUGGCUUAGAACCUGACAGAGUU	chr1:28169551-28169800(+)$1	249	131	159	23.6391
GUUUGUCACCUUUGAGAACAUUGACGAC	chr19:1271179-1271453(+)$1	274	5	33	24.0128
AGGAGGAGUCACCACCUUUUUUCCUCAG	chr17:17717603-17717900(-)$1	297	63	91	24.2832
CUGGGCGGACCCCGGCAAAUACGCCCUG	chr16:1499186-1499489(-)$1	303	163	191	23.2750
UUGGUCAGAAAAUACAAUAUGGCCUCAA	chr3:119153588-119153905(-)$1	317	176	204	23.4690
GAGUGAUAAUACUAUUAGAUUCACUCUA	chr1:110559961-110560251(+)$1	290	253	281	22.3972
AGCUCAGGGAGAAUAACAAAUUGGCUUG	chr16:24833241-24833540(+)$1	299	176	204	22.7802
ACUUUGCUCCUUUUCUCCUGGCAGAAAA	chr1:153948254-153948536(-)$1	282	131	159	22.8380
UGUCCUUCAGGGGAAAUAGAAGAGGAAA	chr14:105916225-105916495(+)$1	270	159	187	24.0815
GCACUACCUCAUCAAUGUCUGCAAGUCU	chr6:160489126-160489418(+)$1	292	241	269	23.8161
AUGAUCCACCCCAACGUGCCGGCCAUCA	chr1:1685543-1685797(-)$1	254	209	237	22.3592
AGACCAGGUAAUAUAUGCUCCUGGGCAG	chr3:49051489-49051773(+)$1	284	53	81	23.0684
UGGGAAAGUGUGUUGGGUGUGGUUUUCU	chr9:130550108-130550356(+)$1	248	58	86	23.1080
GGCAUCCAGCCUCCAUCCUCUGUGGGUG	chr9:134360193-134360464(+)$1	271	216	244	22.6379
GUCUGGCAAACCACGGACAGGCCAGGCA	chr14:105935641-105935926(+)$1	285	162	190	24.5278
GCACUAACUCUCCUCCUCGUGUGUCUCC	chrX:153220869-153221172(-)$1	303	147	175	20.8845
AGCCCUGGAACUUUUGAAUUACCUGGCU	chr4:24541787-24542072(-)$1	285	169	197	22.2831
UAGUUAAAAAAAAAAAAAAAUUUGGAAU	chr5:56541981-56542263(+)$1	282	38	66	25.2010
CAGGGCUGCCCUGAGAUCCUGCCCAGUG	chrX:153693224-153693519(+)$1	295	133	161	22.6426
UCGUGAUCGUAAUAUCCCAUCUGUGGCU	chr11:6500088-6500353(-)$1	265	45	73	21.7786
CCUGACAGUCUAGCUUUUUCCUGUCUUU	chr12:120992377-120992663(+)$1	286	104	132	20.2229
CAAGGCCAUCGACUACAUUCGCUUUCUG	chr17:17721586-17721833(-)$1	247	168	196	22.8161
GUAGUAUCUUAUUGGAUUCUGAUAAUAC	chr18:210248-210515(+)$1	267	11	39	23.3207
CAGUGGAGUUUUAUUAACAAUAAUCUAC	chr2:32698057-32698297(+)$1	240	127	155	21.5875
AGGGUCUCUGGAGGUUGGGUGAGACCCA	chr1:11860275-11860534(-)$1	259	99	127	24.1225

#DB
(((.((((...........)))).))))	chr17:42397702-42397923(-)$1	1	146	174	22.0206
(.(((((((...........))).))))	chr17:73774925-73775211(-)$1	1	191	219	22.5523
(((.((((.............))))..)	chr8:144520096-144520402(-)$1	1	258	286	23.1234
(...((((...........)))).)..)	chr19:799297-799545(+)$1	1	153	181	22.7163
((((((((............)))))..)	chr6:160509986-160510266(+)$1	1	55	83	23.9406
(((.((((.............)))))))	chr1:19491362-19491644(-)$1	1	56	84	22.9466
(...((((............)))).)))	chr17:25638423-25638683(+)$1	1	33	61	23.6475
..((((((............))))))..	chr6:160204963-160205244(-)$1	1	110	138	24.1144
(((((................)))))..	chr1:185270053-185270315(-)$1	1	103	131	20.3235
.(((((((................))))	chr17:2238868-2239138(-)$1	1	9	37	21.1602
((((.((.............))...)))	chr18:8633061-8633331(+)$1	1	160	188	22.6183
((((................))))))((	chr20:33059095-33059371(+)$1	1	61	89	20.8061
(((.((((............))))))).	chrX:153225733-153226023(-)$1	1	36	64	23.0818
.(((((((...........)))))))..	chr14:105225591-105225871(+)$1	1	63	91	23.3004
))(((((..............)))))..	chr22:22042856-22043132(+)$1	1	204	232	20.7159
((((................))))))).	chr8:146062617-146062927(+)$1	1	134	162	21.0242
(.((((((.............)))))).	chr14:35872460-35872721(-)$1	1	210	238	23.8365
((((((................))))))	chr22:19130022-19130305(-)$1	1	60	88	22.1009
(.((((((.............)))).))	chr5:175956716-175956969(-)$1	1	152	180	22.8134
((((((((............))))))).	chr20:42088270-42088546(+)$1	1	123	151	24.5095
((((((((..............))))))	chr19:14521035-14521313(-)$1	1	143	171	22.6307
((((((((.............)))))))	chr8:145109481-145109731(-)$1	1	159	187	20.9548
(.((((((...........)))))).))	chr6:32942094-32942379(+)$1	1	83	111	22.6203
..((((((.............)))))).	chr1:165872261-165872559(+)$1	1	140	168	24.1265
..(((................)))....	chr5:138651646-138651904(+)$1	1	85	113	18.9783
.(((((.((...........)).)))))	chr17:27185432-27185724(+)$1	1	93	121	22.1477
.(((((((............))))))).	chr1:226053550-226053854(-)$1	1	54	82	22.9833
((((.((.............)).))))(	chr7:100283803-100284046(-)$1	1	11	39	22.4885
...(((((...........)))))...)	chr12:133219790-133220041(-)$1	1	71	99	23.7352
(...(((.............)))...))	chr7:99755458-99755721(-)$1	1	191	219	23.8355
..(((((.............)).)))..	chrX:47085865-47086120(+)$1	1	178	206	23.7350
(...((((...........)))))))))	chr16:30724386-30724649(+)$1	1	70	98	22.4945
(((((((.............))))))))	chr16:279024-279332(-)$1	1	196	224	23.5614
..(((((((...........))).))))	chr19:11143824-11144109(+)$1	1	46	74	22.9874
(.(((((.............))))).))	chr11:653894-654190(-)$1	1	191	219	24.0410
((((.(((.............))).)))	chr1:28169551-28169800(+)$1	1	131	159	23.6391
..((((((.............)))))).	chr19:1271179-1271453(+)$1	1	5	33	24.0128
..((((((............))))))..	chr17:17717603-17717900(-)$1	1	63	91	24.2832
(.(((((..............))))).)	chr16:1499186-1499489(-)$1	1	163	191	23.2750
..(((((............))))).)))	chr3:119153588-119153905(-)$1	1	176	204	23.4690
((((((..............))))))).	chr1:110559961-110560251(+)$1	1	253	281	22.3972
(((.(((.............))))).))	chr16:24833241-24833540(+)$1	1	176	204	22.7802
..((((((...........))))))..)	chr1:153948254-153948536(-)$1	1	131	159	22.8380
..(((((..............)))))..	chr14:105916225-105916495(+)$1	1	159	187	24.0815
(.(((..(............)..)))))	chr6:160489126-160489418(+)$1	1	241	269	23.8161
(((((((.............))..))))	chr1:1685543-1685797(-)$1	1	209	237	22.3592
...(((((...........)))))...)	chr3:49051489-49051773(+)$1	1	53	81	23.0684
.((((((.(...........).))))))	chr9:130550108-130550356(+)$1	1	58	86	23.1080
((((((((..............))))))	chr9:134360193-134360464(+)$1	1	216	244	22.6379
(((((((.............))))))).	chr14:105935641-105935926(+)$1	1	162	190	24.5278
((((................))).))..	chrX:153220869-153221172(-)$1	1	147	175	20.8845
((((..((.............)).))))	chr4:24541787-24542072(-)$1	1	169	197	22.2831
...(((((............)))))...	chr5:56541981-56542263(+)$1	1	38	66	25.2010
(.((((..............)))).)))	chrX:153693224-153693519(+)$1	1	133	161	22.6426
(.((.((.(...........).)).)).	chr11:6500088-6500353(-)$1	1	45	73	21.7786
)))(((((............))))).((	chr12:120992377-120992663(+)$1	1	104	132	20.2229
.(((((..............))))).))	chr17:17721586-17721833(-)$1	1	168	196	22.8161
(((.((((............)))).)))	chr18:210248-210515(+)$1	1	11	39	23.3207
..(((((................)))))	chr2:32698057-32698297(+)$1	1	127	155	21.5875
.(((((((............))))))).	chr1:11860275-11860534(-)$1	1	99	127	24.1225

#PSSM
d : 0.15	! : 0.11	b : 0.09	f : 0.09	e : 0.08	g : 0.08	" : 0.08	[ : 0.06	$ : 0.05	c : 0.03	i : 0.03	h : 0.03	a : 0.01	G : 0.01	% : 0.01	: : 0.01	
g : 0.16	[ : 0.15	" : 0.13	d : 0.11	! : 0.09	e : 0.08	$ : 0.05	f : 0.05	c : 0.03	i : 0.03	h : 0.03	G : 0.01	% : 0.01	b : 0.01	
e : 0.18	d : 0.16	f : 0.16	g : 0.16	" : 0.09	c : 0.08	b : 0.05	i : 0.03	h : 0.03	$ : 0.01	
e : 0.24	f : 0.16	g : 0.16	[ : 0.09	d : 0.09	" : 0.06	c : 0.06	i : 0.03	b : 0.03	h : 0.01	
e : 0.23	d : 0.19	f : 0.15	g : 0.15	c : 0.08	[ : 0.06	y : 0.05	i : 0.03	h : 0.01	! : 0.01	
e : 0.21	d : 0.19	g : 0.15	f : 0.13	y : 0.08	b : 0.08	c : 0.05	i : 0.03	! : 0.03	h : 0.01	
e : 0.18	d : 0.15	f : 0.13	g : 0.13	y : 0.09	b : 0.09	c : 0.08	w : 0.05	h : 0.01	[ : 0.01	! : 0.01	i : 0.01	
d : 0.15	v : 0.15	f : 0.11	y : 0.11	g : 0.09	w : 0.09	e : 0.08	c : 0.05	b : 0.03	[ : 0.03	h : 0.01	u : 0.01	a : 0.01	i : 0.01	
v : 0.30	u : 0.21	t : 0.13	y : 0.13	w : 0.13	c : 0.03	a : 0.03	b : 0.01	
v : 0.30	t : 0.21	u : 0.21	y : 0.13	w : 0.13	
v : 0.30	t : 0.21	u : 0.21	y : 0.13	w : 0.13	
v : 0.30	t : 0.21	u : 0.21	y : 0.13	w : 0.13	
v : 0.30	t : 0.21	u : 0.21	y : 0.13	w : 0.13	
v : 0.30	t : 0.21	u : 0.21	y : 0.13	w : 0.13	
v : 0.30	t : 0.21	u : 0.21	y : 0.13	w : 0.13	
v : 0.30	t : 0.21	u : 0.21	y : 0.13	w : 0.13	
v : 0.30	t : 0.21	u : 0.21	y : 0.13	w : 0.13	
v : 0.30	t : 0.21	u : 0.21	y : 0.13	w : 0.13	
v : 0.30	t : 0.21	u : 0.21	y : 0.13	w : 0.13	
v : 0.30	u : 0.19	y : 0.13	w : 0.13	t : 0.08	d : 0.05	e : 0.05	f : 0.03	g : 0.01	
v : 0.15	e : 0.13	g : 0.13	d : 0.11	c : 0.08	f : 0.08	y : 0.08	b : 0.08	w : 0.08	a : 0.05	
e : 0.19	d : 0.16	f : 0.13	g : 0.13	c : 0.11	b : 0.09	y : 0.05	w : 0.03	] : 0.03	h : 0.01	2 : 0.01	
e : 0.19	d : 0.16	f : 0.15	g : 0.15	c : 0.11	] : 0.05	y : 0.03	i : 0.03	2 : 0.03	b : 0.03	3 : 0.01	h : 0.01	
e : 0.23	f : 0.16	g : 0.15	d : 0.13	] : 0.09	c : 0.06	3 : 0.03	i : 0.03	b : 0.03	y : 0.01	h : 0.01	2 : 0.01	
e : 0.18	f : 0.18	g : 0.16	d : 0.13	] : 0.09	3 : 0.06	c : 0.05	i : 0.03	b : 0.03	a : 0.01	h : 0.01	7 : 0.01	
g : 0.18	d : 0.15	f : 0.15	e : 0.11	] : 0.08	2 : 0.06	3 : 0.06	c : 0.05	i : 0.03	b : 0.03	h : 0.01	7 : 0.01	a : 0.01	: : 0.01	
g : 0.16	f : 0.16	d : 0.15	2 : 0.11	3 : 0.09	b : 0.06	e : 0.06	: : 0.03	c : 0.03	i : 0.03	h : 0.01	7 : 0.01	] : 0.01	I : 0.01	
d : 0.16	f : 0.11	e : 0.09	3 : 0.08	: : 0.08	b : 0.08	g : 0.06	2 : 0.06	] : 0.06	c : 0.03	5 : 0.03	i : 0.03	h : 0.01	7 : 0.01	C : 0.01	I : 0.01	

#score	1367.8285767120376
#seq	60
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_CDS_m2_run1.txt

#BEAR
e^^^^^^^^^^^^^^^^^^eeeee:::::	chrM:8576-8778(+)$1	202	20	49	30.1519
^^^^^^^^^^^^^^^^^^^ccc333bb::	chrM:13641-13844(+)$1	203	93	122	30.0187
e^^^^^^^^^^^^^^^^^^eeeee:::::	chrM:8574-8776(+)$1	202	22	51	30.1519
^^^^^^^^^^^^^^^^^^^eeeee22bb2	chrM:13610-13817(+)$1	207	74	103	33.0437
b^^^^^^^^^^^^^^^^^^bbccc22ddd	chrM:7674-7880(+)$1	206	32	61	29.3114
^^^^^^^^^^^^^^^^^^bb]dddd]bb:	chr22:18358198-18358429(-)$1	231	194	223	28.2501
e^^^^^^^^^^^^^^^^^^eeeee:::::	chrM:8556-8759(+)$1	203	40	69	30.1519
e^^^^^^^^^^^^^^^^^^eeeee:::::	chrM:8559-8761(+)$1	202	37	66	30.1519
^^^^^^^^^^^^^^^^^^^eeeee22bb2	chrM:13576-13779(+)$1	203	108	137	33.0437
^^^^^^^^^^^^^^^^^^^ccc333bb::	chrM:13633-13841(+)$1	208	101	130	30.0187
e^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:13725-13959(+)$1	234	203	232	27.6585
e^^^^^^^^^^^^^^^^^^eeeee:::::	chrM:8583-8787(+)$1	204	13	42	30.1519
^^^^^^^^^^^^^^^ccc]ccc=======	chr19:2852197-2852490(+)$1	293	149	178	22.9834
^^^^^^^^^^^^^^^^^^^eeeee22bb2	chrM:13585-13790(+)$1	205	99	128	33.0437
ffyyyyyyyyyyyyyyyyffffff:::::	chrM:8318-8546(+)$1	228	73	102	19.8773
e^^^^^^^^^^^^^^^^^^eeeee:::::	chrM:8569-8774(+)$1	205	27	56	30.1519
e^^^^^^^^^^^^^^^^^^eeeee:::::	chrM:8578-8783(+)$1	205	18	47	30.1519
^^^^^^^^^^^^^^^^^^^eeeee22bb2	chrM:13604-13810(+)$1	206	80	109	33.0437
e^^^^^^^^^^^^^^^^^^eeeee:::::	chrM:8561-8765(+)$1	204	35	64	30.1519
^^^^^^^^^^^^^^^^^^^^^^^^bb>>>	chrM:7680-7895(+)$1	215	126	155	29.0952
^^^^^^^^^^^^^ccc22eeeee::::::	chrM:10802-11037(+)$1	235	91	120	21.5034
^^^^^^^^^^^^^^^^^^^eeeee22bb2	chrM:13510-13763(+)$1	253	174	203	33.0437
e^^^^^^^^^^^^^^^^^^eeeee:::::	chrM:8587-8796(+)$1	209	9	38	30.1519
ccc^^^^^^^^^^^^^^^^^^ccc::eee	chrM:10175-10422(+)$1	247	7	36	25.0854
b^^^^^^^^^^^^^^^^^^bbccc22ddd	chrM:7650-7856(+)$1	206	56	85	29.3114
"bbvvvvvvvvvvvvvbb]eeeee333cc	chrM:10023-10247(+)$1	224	157	186	18.1113
e^^^^^^^^^^^^^^^^^^eeeee:::::	chrM:8565-8769(+)$1	204	31	60	30.1519
^^^^^^^^^^^^^^^^^^^eeeee22bb2	chrM:13566-13772(+)$1	206	118	147	33.0437
^^^^^^^^^^^^^^^^^^^eeeee22bb2	chrM:13590-13795(+)$1	205	94	123	33.0437
eeeyyyyyyyyyyyyyyyyeeeee22ddd	chr12:67706371-67706745(+)$1	374	199	228	22.5677
b^^^^^^^^^^^^^^^^^^bbccc22ddd	chrM:7669-7874(+)$1	205	37	66	29.3114
^^^^^^^^^^^^^^^^^^^^dddd:::::	chrM:7695-7912(+)$1	217	25	54	29.1007
ffyyyyyyyyyyyyyyyyffffff:::::	chrM:8346-8594(+)$1	248	45	74	19.8773
^^^^^^^^^^^^^^^^^^^eeeee22bb2	chrM:13572-13776(+)$1	204	112	141	33.0437
^^^^^^^^^^^^^^^^^^^eeeee22bb2	chrM:13595-13803(+)$1	208	89	118	33.0437
xxxxxxxxxxxxxxxbb22eeeee:::::	chr13:98017145-98017492(+)$1	347	104	133	19.2790
b^^^^^^^^^^^^^^^^^^bbccc22ddd	chrM:7642-7848(+)$1	206	64	93	29.3114
^^^^^^^^^^^^^^^^^^^eeeee22bb2	chrM:13579-13785(+)$1	206	105	134	33.0437
b^^^^^^^^^^^^^^^^^^bbccc22ddd	chrM:7632-7836(+)$1	204	74	103	29.3114
b^^^^^^^^^^^^^^^^^^bbccc22ddd	chrM:7636-7842(+)$1	206	70	99	29.3114
^^^^^^^^^^^^^ccc22eeeee::::::	chrM:10837-11051(+)$1	214	56	85	21.5034

#otherMatches

#Seq PSSM
AUUCUAUUUCCCCCUCUAUUGAUCCCCAC	chrM:8576-8778(+)$1	202	20	49	30.1519
UCUCAUUACUAACAACAUUUCCCCCGCAU	chrM:13641-13844(+)$1	203	93	122	30.0187
AUUCUAUUUCCCCCUCUAUUGAUCCCCAC	chrM:8574-8776(+)$1	202	22	51	30.1519
CUACUAAACCCCAUUAAACGCCUGGCAGC	chrM:13610-13817(+)$1	207	74	103	33.0437
GCCCUUUUCCUAACACUCACAACAAAACU	chrM:7674-7880(+)$1	206	32	61	29.3114
CCUCCUCCGACUCCCUCCGACAGGUAGCA	chr22:18358198-18358429(-)$1	231	194	223	28.2501
AUUCUAUUUCCCCCUCUAUUGAUCCCCAC	chrM:8556-8759(+)$1	203	40	69	30.1519
AUUCUAUUUCCCCCUCUAUUGAUCCCCAC	chrM:8559-8761(+)$1	202	37	66	30.1519
CUACUAAACCCCAUUAAACGCCUGGCAGC	chrM:13576-13779(+)$1	203	108	137	33.0437
UCUCAUUACUAACAACAUUUCCCCCGCAU	chrM:13633-13841(+)$1	208	101	130	30.0187
GCAUCACACACCGCACAAUCCCCUAUCUA	chrM:13725-13959(+)$1	234	203	232	27.6585
AUUCUAUUUCCCCCUCUAUUGAUCCCCAC	chrM:8583-8787(+)$1	204	13	42	30.1519
AUCAAACCAAUAACAUGCUUCUCAUUUUU	chr19:2852197-2852490(+)$1	293	149	178	22.9834
CUACUAAACCCCAUUAAACGCCUGGCAGC	chrM:13585-13790(+)$1	205	99	128	33.0437
GGCCCACCAUAAUUACCCCCAUACUCCUU	chrM:8318-8546(+)$1	228	73	102	19.8773
AUUCUAUUUCCCCCUCUAUUGAUCCCCAC	chrM:8569-8774(+)$1	205	27	56	30.1519
AUUCUAUUUCCCCCUCUAUUGAUCCCCAC	chrM:8578-8783(+)$1	205	18	47	30.1519
CUACUAAACCCCAUUAAACGCCUGGCAGC	chrM:13604-13810(+)$1	206	80	109	33.0437
AUUCUAUUUCCCCCUCUAUUGAUCCCCAC	chrM:8561-8765(+)$1	204	35	64	30.1519
UCCUCAUCGCCCUCCCAUCCCUACGCAUC	chrM:7680-7895(+)$1	215	126	155	29.0952
UCAACAACAACCUAUUUAGCUGUUCCCCA	chrM:10802-11037(+)$1	235	91	120	21.5034
CUACUAAACCCCAUUAAACGCCUGGCAGC	chrM:13510-13763(+)$1	253	174	203	33.0437
AUUCUAUUUCCCCCUCUAUUGAUCCCCAC	chrM:8587-8796(+)$1	209	9	38	30.1519
GACCCUAUAUCCCCCGCCCGCGUCCCUUU	chrM:10175-10422(+)$1	247	7	36	25.0854
GCCCUUUUCCUAACACUCACAACAAAACU	chrM:7650-7856(+)$1	206	56	85	29.3114
UCGACCCUAUAUCCCCCGCCCGCGUCCCU	chrM:10023-10247(+)$1	224	157	186	18.1113
AUUCUAUUUCCCCCUCUAUUGAUCCCCAC	chrM:8565-8769(+)$1	204	31	60	30.1519
CUACUAAACCCCAUUAAACGCCUGGCAGC	chrM:13566-13772(+)$1	206	118	147	33.0437
CUACUAAACCCCAUUAAACGCCUGGCAGC	chrM:13590-13795(+)$1	205	94	123	33.0437
UUCAUCAUCUACUAACUUGGAAUCAAUGG	chr12:67706371-67706745(+)$1	374	199	228	22.5677
GCCCUUUUCCUAACACUCACAACAAAACU	chrM:7669-7874(+)$1	205	37	66	29.3114
ACUCACAACAAAACUAACUAAUACUAACA	chrM:7695-7912(+)$1	217	25	54	29.1007
GGCCCACCAUAAUUACCCCCAUACUCCUU	chrM:8346-8594(+)$1	248	45	74	19.8773
CUACUAAACCCCAUUAAACGCCUGGCAGC	chrM:13572-13776(+)$1	204	112	141	33.0437
CUACUAAACCCCAUUAAACGCCUGGCAGC	chrM:13595-13803(+)$1	208	89	118	33.0437
GAAUGGCCCUAAAAGACUGUGUUAACUAA	chr13:98017145-98017492(+)$1	347	104	133	19.2790
GCCCUUUUCCUAACACUCACAACAAAACU	chrM:7642-7848(+)$1	206	64	93	29.3114
CUACUAAACCCCAUUAAACGCCUGGCAGC	chrM:13579-13785(+)$1	206	105	134	33.0437
GCCCUUUUCCUAACACUCACAACAAAACU	chrM:7632-7836(+)$1	204	74	103	29.3114
GCCCUUUUCCUAACACUCACAACAAAACU	chrM:7636-7842(+)$1	206	70	99	29.3114
UCAACAACAACCUAUUUAGCUGUUCCCCA	chrM:10837-11051(+)$1	214	56	85	21.5034

#DB
(..................))))).....	chrM:8576-8778(+)$1	1	20	49	30.1519
...................)))...))..	chrM:13641-13844(+)$1	1	93	122	30.0187
(..................))))).....	chrM:8574-8776(+)$1	1	22	51	30.1519
...................)))))..)).	chrM:13610-13817(+)$1	1	74	103	33.0437
(..................)))))..)))	chrM:7674-7880(+)$1	1	32	61	29.3114
..................)).)))).)).	chr22:18358198-18358429(-)$1	1	194	223	28.2501
(..................))))).....	chrM:8556-8759(+)$1	1	40	69	30.1519
(..................))))).....	chrM:8559-8761(+)$1	1	37	66	30.1519
...................)))))..)).	chrM:13576-13779(+)$1	1	108	137	33.0437
...................)))...))..	chrM:13633-13841(+)$1	1	101	130	30.0187
(.........................)))	chrM:13725-13959(+)$1	1	203	232	27.6585
(..................))))).....	chrM:8583-8787(+)$1	1	13	42	30.1519
...............))).))))))))))	chr19:2852197-2852490(+)$1	1	149	178	22.9834
...................)))))..)).	chrM:13585-13790(+)$1	1	99	128	33.0437
((................)))))).....	chrM:8318-8546(+)$1	1	73	102	19.8773
(..................))))).....	chrM:8569-8774(+)$1	1	27	56	30.1519
(..................))))).....	chrM:8578-8783(+)$1	1	18	47	30.1519
...................)))))..)).	chrM:13604-13810(+)$1	1	80	109	33.0437
(..................))))).....	chrM:8561-8765(+)$1	1	35	64	30.1519
........................))...	chrM:7680-7895(+)$1	1	126	155	29.0952
.............)))..)))))......	chrM:10802-11037(+)$1	1	91	120	21.5034
...................)))))..)).	chrM:13510-13763(+)$1	1	174	203	33.0437
(..................))))).....	chrM:8587-8796(+)$1	1	9	38	30.1519
(((..................)))..(((	chrM:10175-10422(+)$1	1	7	36	25.0854
(..................)))))..)))	chrM:7650-7856(+)$1	1	56	85	29.3114
.((.............)).)))))...))	chrM:10023-10247(+)$1	1	157	186	18.1113
(..................))))).....	chrM:8565-8769(+)$1	1	31	60	30.1519
...................)))))..)).	chrM:13566-13772(+)$1	1	118	147	33.0437
...................)))))..)).	chrM:13590-13795(+)$1	1	94	123	33.0437
(((................)))))..)))	chr12:67706371-67706745(+)$1	1	199	228	22.5677
(..................)))))..)))	chrM:7669-7874(+)$1	1	37	66	29.3114
....................)))).....	chrM:7695-7912(+)$1	1	25	54	29.1007
((................)))))).....	chrM:8346-8594(+)$1	1	45	74	19.8773
...................)))))..)).	chrM:13572-13776(+)$1	1	112	141	33.0437
...................)))))..)).	chrM:13595-13803(+)$1	1	89	118	33.0437
...............))..))))).....	chr13:98017145-98017492(+)$1	1	104	133	19.2790
(..................)))))..)))	chrM:7642-7848(+)$1	1	64	93	29.3114
...................)))))..)).	chrM:13579-13785(+)$1	1	105	134	33.0437
(..................)))))..)))	chrM:7632-7836(+)$1	1	74	103	29.3114
(..................)))))..)))	chrM:7636-7842(+)$1	1	70	99	29.3114
.............)))..)))))......	chrM:10837-11051(+)$1	1	56	85	21.5034

#PSSM
^ : 0.43	e : 0.29	b : 0.14	f : 0.04	c : 0.02	" : 0.02	x : 0.02	
^ : 0.85	f : 0.04	c : 0.02	b : 0.02	e : 0.02	x : 0.02	
^ : 0.85	y : 0.04	c : 0.02	b : 0.02	e : 0.02	x : 0.02	
^ : 0.87	y : 0.07	v : 0.02	x : 0.02	
^ : 0.87	y : 0.07	v : 0.02	x : 0.02	
^ : 0.87	y : 0.07	v : 0.02	x : 0.02	
^ : 0.87	y : 0.07	v : 0.02	x : 0.02	
^ : 0.87	y : 0.07	v : 0.02	x : 0.02	
^ : 0.87	y : 0.07	v : 0.02	x : 0.02	
^ : 0.87	y : 0.07	v : 0.02	x : 0.02	
^ : 0.87	y : 0.07	v : 0.02	x : 0.02	
^ : 0.87	y : 0.07	v : 0.02	x : 0.02	
^ : 0.87	y : 0.07	v : 0.02	x : 0.02	
^ : 0.82	y : 0.07	c : 0.04	v : 0.02	x : 0.02	
^ : 0.82	y : 0.07	c : 0.04	v : 0.02	x : 0.02	
^ : 0.80	c : 0.07	y : 0.07	v : 0.02	b : 0.02	
^ : 0.80	y : 0.07	2 : 0.04	b : 0.04	c : 0.02	
^ : 0.80	y : 0.07	2 : 0.07	c : 0.02	b : 0.02	
^ : 0.78	] : 0.04	f : 0.04	e : 0.04	b : 0.02	y : 0.02	2 : 0.02	
e : 0.60	b : 0.17	^ : 0.09	c : 0.07	f : 0.04	
e : 0.60	b : 0.14	c : 0.07	^ : 0.07	f : 0.04	] : 0.02	d : 0.02	
e : 0.60	c : 0.24	d : 0.04	^ : 0.04	f : 0.04	
e : 0.60	c : 0.17	3 : 0.04	d : 0.04	^ : 0.04	f : 0.04	= : 0.02	
e : 0.56	c : 0.17	3 : 0.04	d : 0.04	^ : 0.04	f : 0.04	: : 0.04	= : 0.02	
: : 0.41	2 : 0.41	3 : 0.07	d : 0.02	^ : 0.02	= : 0.02	b : 0.02	
: : 0.41	2 : 0.41	b : 0.07	] : 0.02	^ : 0.02	= : 0.02	3 : 0.02	
: : 0.39	b : 0.31	d : 0.17	e : 0.04	= : 0.02	> : 0.02	3 : 0.02	
: : 0.43	b : 0.26	d : 0.17	e : 0.04	= : 0.02	> : 0.02	c : 0.02	
: : 0.46	2 : 0.24	d : 0.17	e : 0.04	= : 0.02	> : 0.02	c : 0.02	

#score	1172.7568428937316
#seq	41
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_transcript_m1_run2.txt

#BEAR
cc!!ccc[bb[bb[cccmmmmccc333bb]bb]ccc22	chrX:53620372-53620645(-)$1	273	202	240	13.8815
$$$ccc[a[gggggggmmmmggggggga]ccc4444ff	chr6:144852225-144852438(+)$1	213	58	96	10.9530
fff!!ccc[dddd[ccclllccc]ddddccc333ffff	chr9:135205169-135205438(-)$1	269	99	137	12.0688
badddd!!ccc"""cccnnnnnccc22ccc22dddd]a	chr20:20610087-20610334(-)$1	247	131	169	13.2627
:=============cccmmmmccc]=============	chr4:79202478-79202687(+)$1	209	133	171	14.2816
eeeee"""bb!!aooooooa22bb333eeeee22ccc]	chr6:43753300-43753585(+)$1	285	153	191	11.9768
ccc####ccc!!a[bboooooobb]a22ccc4444ccc	chr17:44248122-44248346(-)$1	224	74	112	15.1046
weeeee:==========mmmm==========eeeee[d	chr15:62302661-62302898(-)$1	237	40	78	10.9073
f!!dddd"""a[a[bboooooobb]a]a333dddd333	chr12:49420067-49420314(-)$1	247	15	53	14.3229
bb!!eeeee"""ddddmmmmdddd22eeeee4444bb3	chr6:43324816-43325170(-)$1	354	154	192	10.9640
"dddd!!dddd[aooooooa]dddd333dddd]ggggg	chrX:153586547-153586783(-)$1	236	101	139	12.1122
dd[bb"""dddd"""ccclllccc333dddd333bb]d	chr6:56399891-56400148(-)$1	257	144	182	14.4181
:dddd"""ccc[a[cccmmmmccc]a]ccc22ddddgg	chr11:108196796-108197052(+)$1	256	35	73	13.5176
e!!eeeeeccc[ccc[bbmmmmbb]ccc]ccc]eeeee	chr9:139368615-139368857(-)$1	242	174	212	11.1945
ff[hhhhhhhh[a[cccmmmmccc]a]hhhhhhhh]ff	chr4:151772993-151773229(-)$1	236	161	199	11.4742
ddd[a[dddd####cccmmmmccc]dddd22a]dddd3	chr1:12343189-12343462(+)$1	273	176	214	13.2332
ggggggg[ccc"""ccclllccc333ccc]ggggggg4	chr12:57522651-57522913(+)$1	262	117	155	14.8111
ee[dddd[ccc[cccooooooccc22ccc22dddd]ee	chr4:3214208-3214447(+)$1	239	95	133	12.8957
gggg!!ffffff!!cccmmmmccc333ffffff22ggg	chr13:77765728-77765993(-)$1	265	91	129	13.3460
iiiii[ccc"""bb[bbmmmmbb]bb333ccc22iiii	chr12:121416421-121416682(+)$1	261	89	127	12.6513
bb"""dddd[cccaooooooa]ccc22dddd333bb22	chr16:18480471-18480720(-)$1	249	118	156	12.4790
ff[ccc[ccc[ddddcccmmmmccc]ddddccc]ccc]	chr7:6695693-6695960(+)$1	267	144	182	12.3979
:bb!!cccdddd!!cccmmmmccc22dddd]ccc22bb	chr2:198267573-198267810(-)$1	237	198	236	11.8273
bb!!ccc[a[ddddcccmmmmccc]ddddaccc22bbd	chr9:14812710-14812941(-)$1	231	164	202	12.6778
ddd===========cccnnnnnccc22===========	chr12:26731562-26731825(-)$1	263	171	209	13.8297
eeeee!!eeeee"""bbnnnnnbb333eeeee22eeee	chr16:16291904-16292139(-)$1	235	122	160	12.0096
!!ccc!!ccc[bb!!cccnnnnncccbb]cccccc333	chr11:121424672-121424919(+)$1	247	195	233	11.1643
ggggggg[ccc####ccclllccc4444ccc]gggggg	chr7:127341229-127341479(+)$1	250	161	199	14.6516
ggggg"""ccc[ccclllccc]ccc333gggggggfff	chr11:121475725-121475973(+)$1	248	193	231	11.5927
cccggggggg####bboooooobb4444ggggggg]cc	chr3:32859646-32859939(+)$1	293	189	227	14.5215
cc[bb!!bb[bb!!bboooooobb333bb]bb22bb]c	chr20:25206950-25207224(+)$1	274	36	74	12.6927
gggggggggggg####aooooooa333ggggggg>>>>	chr2:198265338-198265567(-)$1	229	123	161	13.8582
ddddcccdddd"""cccmmmmccc22dddd]ccc]ddd	chr15:28510942-28511219(-)$1	277	153	191	13.4605
bb[ccc!!ccc[a[cccmmmmccc333a]ccc22ccc2	chr3:9482235-9482483(+)$1	248	132	170	16.9901
cc!!eeeee####cccnnnnnccc4444eeeee]ccc>	chr1:39775218-39775469(+)$1	251	51	89	13.0902
!a####ccc[ddddcccmmmmccc]dddd]ccc22a22	chr22:21352818-21353168(+)$1	350	217	255	13.1572
e!!eeeeeccc[ccc[bbmmmmbb]ccc]ccc]eeeee	chr9:139368555-139368807(-)$1	252	124	162	11.1945
ggg[accc[bb[ddddmmmmddddbb333ccc22a]gg	chr14:21541166-21541409(+)$1	243	187	225	11.1586
deeeee!!iiiiiiiiimmmmiiiiiiiii333eeeee	chr9:114192746-114193000(-)$1	254	204	242	12.2631
e!!a[gggggggbbccclllccc]bb22ggggggga22	chr17:78319672-78319926(+)$1	254	46	84	11.5842
bb[ccc[===========mmmm===========]ccc]	chr9:117053049-117053291(+)$1	242	17	55	13.8374
ee!!cccdddd[eeeeeooooooeeeeedddd4444cc	chr1:19467769-19468078(-)$1	309	29	67	11.2814
##ddddccc$$$$$cccnnnnnccc4444ccc]dddd3	chr20:36642058-36642332(-)$1	274	171	209	12.9897
cccccc!!eeeee[bboooooobbeeeee]ccc]cccD	chr19:1981017-1981318(+)$1	301	108	146	11.2587
====bb[dddd!!ddddmmmmdddddddd]bb333===	chr3:53857727-53857996(-)$1	269	112	150	11.5347
:ddddccc!!ccc[cccmmmmccc]cccccc]dddd::	chr2:32715021-32715291(+)$1	270	142	180	11.0077
$$ccc[dddd!!ddddoooooodddd22dddd22ccc5	chr2:61575467-61575699(-)$1	232	164	202	11.7230
#==========[a[cccmmmmccc22a]==========	chr20:33680331-33680560(-)$1	229	124	162	15.6682
[dddd[ccc!!ddddoooooodddd4444ccc]dddd]	chr1:70701083-70701319(+)$1	236	185	223	12.9244
bb[bb####dddd[cccooooooccc]dddd4444bb]	chr10:21962433-21962683(+)$1	250	65	103	13.1083
[dddd"""dddd"""bboooooobb22dddddddd]af	chr16:72992010-72992274(-)$1	264	148	186	12.6492
dddd[ccc[cccaooooooa]ccc4444cccdddd]a4	chr16:16138206-16138468(+)$1	262	132	170	12.4089
dd!!dddd"""bb[bboooooobbbb22dddd333ddd	chr2:62933064-62933284(+)$1	220	136	174	12.5576
ggggggg"""ccc[ccclllccc]cccggggggg4444	chr1:19446698-19446941(-)$1	243	171	209	12.9916
bb[a[ggggggg[ddddmmmmdddd4444ggggggg]a	chr16:18478871-18479140(-)$1	269	185	223	12.3172
cc[ccc[ccc!!a[bbmmmmbb]a22ccc]ccc]ccc:	chr1:52703362-52703644(+)$1	282	119	157	12.3330
bb[ccc[dddd[ccc[aooooooa]cccdddd]cccbb	chr9:117044636-117044853(+)$1	217	111	149	12.9177
:dddd[==========oooooo==========22dddd	chr2:97260687-97260948(-)$1	261	208	246	13.3864
ff[dddd[dddd"""bbnnnnnbb333dddd]dddd33	chr16:58622611-58622866(-)$1	255	102	140	12.8299

#otherMatches

#Seq PSSM
AAGAUGGUGAAUCCCACCACGGUGCUUGAAUCUCCACA	chrX:53620372-53620645(-)$1	273	202	240	13.8815
UACCUGUGCUCCAGGUGGCAGCCUGGACUUAGAGAAAG	chr6:144852225-144852438(+)$1	213	58	96	10.9530
UUGGGCAGCAGUCUCUUUGCAAGCGAUUCUGGGAUAAG	chr9:135205169-135205438(-)$1	269	99	137	12.0688
CGCCUGAGCUGGAUGGUGGUGGGCCCACGGAGCAGGAC	chr20:20610087-20610334(-)$1	247	131	169	13.2627
CGUAGAUCAUUAUAAAAUUGUUUUAUGUAAUGAUCUGC	chr4:79202478-79202687(+)$1	209	133	171	14.2816
GGCACAGAGAGACAGGGCAGGAUCCACGUGCCCAUUGU	chr6:43753300-43753585(+)$1	285	153	191	11.9768
UUGAAGAGGAAGAACUGACCAGAGCUGAUCCCGAGCAG	chr17:44248122-44248346(-)$1	224	74	112	15.1046
UACACUUGUUUAUAUGUAAAAGCAUAUGAACAUAUCUU	chr15:62302661-62302898(-)$1	237	40	78	10.9073
UGUCUUCCGGCGGGUCUACAUUGAGCGGGACGAGGUGA	chr12:49420067-49420314(-)$1	247	15	53	14.3229
GGUACUGGCUGUUCCAUCCCUGGAUUGUCAGGUGUCCU	chr6:43324816-43325170(-)$1	354	154	192	10.9640
AGGUGAAGGCCAGUGGCCCCGGGCUCAACACCACUGGC	chrX:153586547-153586783(-)$1	236	101	139	12.1122
GGUGGACACUGAGGAGCUUGUGGCCAAUCAGAAGCCCC	chr6:56399891-56400148(-)$1	257	144	182	14.4181
CUGUGGAGUCUCUGAGUGGCAGCUGGAAGAAGCACAAG	chr11:108196796-108197052(+)$1	256	35	73	13.5176
UCCGGCCAGGCAGCUGUGCCGUCAGAGCAGCCGUGGCC	chr9:139368615-139368857(-)$1	242	174	212	11.1945
AAGCACCUCAACCUCAUCGACAUGUGCUUGAGGUGAUU	chr4:151772993-151773229(-)$1	236	161	199	11.4742
UCCAGUUGUAUCAAAGGCCCACCUCUGCGUCCCGGAAA	chr1:12343189-12343462(+)$1	273	176	214	13.2332
CUGCUGCUGCCCCUGCUCUCAGCUCUGGUCGCGGCGGC	chr12:57522651-57522913(+)$1	262	117	155	14.8111
GUAUCAGUCCCUGCCCACUCUGGCCCGGGCCCUGGCAC	chr4:3214208-3214447(+)$1	239	95	133	12.8957
GGGUGGUGGUAUGUGGCAUGGGCCCGAGUGUCAGGACC	chr13:77765728-77765993(-)$1	265	91	129	13.3460
GCGGUGGGGGAGGCGGCUAGCGUGGUGGACCCGGGCCG	chr12:121416421-121416682(+)$1	261	89	127	12.6513
CCAUCUCCUACAGCUGGACUGCCUGGAGGGACAGGGGC	chr16:18480471-18480720(-)$1	249	118	156	12.4790
GGCAUUGGGGUGCUGGGUAAUGACCUCGGCCCUGGGUU	chr7:6695693-6695960(+)$1	267	144	182	12.3979
AAGAAAUGGUUGAAGAUUAAUAUUACCAACUCAUGACU	chr2:198267573-198267810(-)$1	237	198	236	11.8273
GCAAGCAACAUGAGAGUCUCCACUCCUCAGUGUGGGCU	chr9:14812710-14812941(-)$1	231	164	202	12.6778
CUGAAGUGGGUAAGUCAUAGUUUGAGUUUUACUUAUUU	chr12:26731562-26731825(-)$1	263	171	209	13.8297
CCAGAAAGGCCAGUGCGGUGGGUGAUGUGGUCAAUCUG	chr16:16291904-16292139(-)$1	235	122	160	12.0096
UGUCCUGAUAAGCUGCAUGCAGAAUGGCCUAUGGAAAU	chr11:121424672-121424919(+)$1	247	195	233	11.1643
GAACAGACAGAUACGACUCAGGGUGAUUUCUUUCUGUU	chr7:127341229-127341479(+)$1	250	161	199	14.6516
UGCUUCUUGUGUAUAUAAUGUCUACUACAGGUAGGUCC	chr11:121475725-121475973(+)$1	248	193	231	11.5927
GCUGCGCUGCCCCGUGUGCGACCAGAAAGUAGUGCUAG	chr3:32859646-32859939(+)$1	293	189	227	14.5215
GGUGCCAAGUGCUUGUGUAGAAACUGUGUUCUGAGCCC	chr20:25206950-25207224(+)$1	274	36	74	12.6927
ACAGAGGUAAUGAAAACUAUUAUGGCACAUUGCUACUA	chr2:198265338-198265567(-)$1	229	123	161	13.8582
GCACGUGGUGCACAUCGCUUGCGGGAGCACUUACAGUG	chr15:28510942-28511219(-)$1	277	153	191	13.4605
GGUUCCCAAAUGCAGGUAAGCACCAAAGGGUUGAGGAC	chr3:9482235-9482483(+)$1	248	132	170	16.9901
GCCCUUUGGCAUCAGCUGCAUGUUAACACCAAAAGCCU	chr1:39775218-39775469(+)$1	251	51	89	13.0902
GGAUAUGUCAGCACCUGGAAGUGGAGUGCAGGCUGCAG	chr22:21352818-21353168(+)$1	350	217	255	13.1572
UCCGGCCAGGCAGCUGUGCCGUCAGAGCAGCCGUGGCC	chr9:139368555-139368807(-)$1	252	124	162	11.1945
CUGGUACCAGCCAAGCACCUGCUUGCCAAGGUCCAGCA	chr14:21541166-21541409(+)$1	243	187	225	11.1586
CGUAAAAAGUAGUUUGUUGACAUGAACUGCGUAUUUAU	chr9:114192746-114193000(-)$1	254	204	242	12.2631
GAAGCACUCUGAGGAGAUGAUCUGCCGUUUGGAGUCAG	chr17:78319672-78319926(+)$1	254	46	84	11.5842
UCCUCUGCCUGCUUUCUUAACAGGGGGAGCAGGGAGAC	chr9:117053049-117053291(+)$1	242	17	55	13.8374
AUGGGACACUGACAGAGCUUUCUCUCUGCAGUCUGAGU	chr1:19467769-19468078(-)$1	309	29	67	11.2814
CAGCUCACAAAGACCCAGACAGUGGAGAAUGUGGAGCA	chr20:36642058-36642332(-)$1	274	171	209	12.9897
GGCCCUGGACUGGCGGGCGGUUCCCCAGUGGGGUGCCC	chr19:1981017-1981318(+)$1	301	108	146	11.2587
CGGGCUGCGUGCUGGCUGGGAGGCUCACGGAGGACCCC	chr3:53857727-53857996(-)$1	269	112	150	11.5347
ACAUGGUGCCUUGUGCUUCAUAGCCUAACACUCAUGAC	chr2:32715021-32715291(+)$1	270	142	180	11.0077
UAGUGAUGGAUCUAGCAAUGAGGUUAAUUCUAGCCACG	chr2:61575467-61575699(-)$1	232	164	202	11.7230
GCCUGGUCCgggcggugcagguacgaggcuggaccagg	chr20:33680331-33680560(-)$1	229	124	162	15.6682
GUAUCUGAAUGUCUACAGAAUUAGAGUUUUUUUGAUAG	chr1:70701083-70701319(+)$1	236	185	223	12.9244
AGCUGUUACUUCACAGCCUAAAAGCUUUGAAAAUUCAC	chr10:21962433-21962683(+)$1	250	65	103	13.1083
UGGAGUGCCCCAAAUGCGACACGGUCCUGGGCUCCUCC	chr16:72992010-72992274(-)$1	264	148	186	12.6492
AUCCUGCCCAGCCGAAAGAGAGUUCCAAGGUGGAUGCG	chr16:16138206-16138468(+)$1	262	132	170	12.4089
GCGGGAGUGGACGAGCGGCGGGGCCGGGGCUCGGGGUC	chr2:62933064-62933284(+)$1	220	136	174	12.5576
AGGAAACCCUGAUCCAGUUCCUGCGUUGUUUCCUGUUA	chr1:19446698-19446941(-)$1	243	171	209	12.9916
CGUGAGCCGGCCUCAGCUGGUGCUGCCGUGGCUGGCGC	chr16:18478871-18479140(-)$1	269	185	223	12.3172
GGGAGAGAAGAAAUGUGGAAACCUGGCUUGUCUGCCAG	chr1:52703362-52703644(+)$1	282	119	157	12.3330
CUAUCAAGGACAGCUGGGUGAGAUGGGCGUCCCUGGAG	chr9:117044636-117044853(+)$1	217	111	149	12.9177
CUUCUGGUUUUUGUUAGUAUCAUAAUGAAGGCAAAGAG	chr2:97260687-97260948(-)$1	261	208	246	13.3864
GCCUAUUUUCGCAUGUGGAUUUCAGUGGCGAUGGUAAA	chr16:58622611-58622866(-)$1	255	102	140	12.8299

#DB
((..(((.((.((.(((....)))...)).)).)))..	chrX:53620372-53620645(-)$1	1	202	240	13.8815
...(((.(.(((((((....)))))))).)))....))	chr6:144852225-144852438(+)$1	1	58	96	10.9530
(((..(((.((((.(((...))).)))))))...))))	chr9:135205169-135205438(-)$1	1	99	137	12.0688
((((((..(((...(((.....)))..)))..)))).)	chr20:20610087-20610334(-)$1	1	131	169	13.2627
.((((((((((((((((....))).)))))))))))))	chr4:79202478-79202687(+)$1	1	133	171	14.2816
(((((...((..(......)..))...)))))..))).	chr6:43753300-43753585(+)$1	1	153	191	11.9768
(((....(((..(.((......)).)..)))....)))	chr17:44248122-44248346(-)$1	1	74	112	15.1046
.))))).((((((((((....))))))))))(((((.(	chr15:62302661-62302898(-)$1	1	40	78	10.9073
(..((((...(.(.((......)).).)...))))...	chr12:49420067-49420314(-)$1	1	15	53	14.3229
((..(((((...((((....))))..)))))....)).	chr6:43324816-43325170(-)$1	1	154	192	10.9640
.((((..((((.(......).))))...)))).)))))	chrX:153586547-153586783(-)$1	1	101	139	12.1122
((.((...((((...(((...)))...))))...)).)	chr6:56399891-56400148(-)$1	1	144	182	14.4181
.((((...(((.(.(((....))).).)))..))))((	chr11:108196796-108197052(+)$1	1	35	73	13.5176
(..((((((((.(((.((....)).))).))).)))))	chr9:139368615-139368857(-)$1	1	174	212	11.1945
((.((((((((.(.(((....))).).)))))))).))	chr4:151772993-151773229(-)$1	1	161	199	11.4742
(((.(.((((....(((....))).))))..).)))).	chr1:12343189-12343462(+)$1	1	176	214	13.2332
(((((((.(((...(((...)))...))).))))))).	chr12:57522651-57522913(+)$1	1	117	155	14.8111
((.((((.(((.(((......)))..)))..)))).))	chr4:3214208-3214447(+)$1	1	95	133	12.8957
((((..((((((..(((....)))...))))))..)))	chr13:77765728-77765993(-)$1	1	91	129	13.3460
(((((.(((...((.((....)).))...)))..))))	chr12:121416421-121416682(+)$1	1	89	127	12.6513
((...((((.((((......).)))..))))...))..	chr16:18480471-18480720(-)$1	1	118	156	12.4790
((.(((.(((.(((((((....))).))))))).))).	chr7:6695693-6695960(+)$1	1	144	182	12.3979
.((..(((((((..(((....)))..)))).)))..))	chr2:198267573-198267810(-)$1	1	198	236	11.8273
((..(((.(.(((((((....))).))))))))..)))	chr9:14812710-14812941(-)$1	1	164	202	12.6778
)))((((((((((((((.....)))..)))))))))))	chr12:26731562-26731825(-)$1	1	171	209	13.8297
(((((..(((((...((.....))...)))))..))))	chr16:16291904-16292139(-)$1	1	122	160	12.0096
..(((..(((.((..(((.....))))).))))))...	chr11:121424672-121424919(+)$1	1	195	233	11.1643
(((((((.(((....(((...)))....))).))))))	chr7:127341229-127341479(+)$1	1	161	199	14.6516
(((((...(((.(((...))).)))...)))))))(((	chr11:121475725-121475973(+)$1	1	193	231	11.5927
((((((((((....((......))....))))))).))	chr3:32859646-32859939(+)$1	1	189	227	14.5215
((.((..((.((..((......))...)).))..)).)	chr20:25206950-25207224(+)$1	1	36	74	12.6927
((((((((((((....(......)...)))))))....	chr2:198265338-198265567(-)$1	1	123	161	13.8582
(((((((((((...(((....)))..)))).))).)))	chr15:28510942-28511219(-)$1	1	153	191	13.4605
((.(((..(((.(.(((....)))...).)))..))).	chr3:9482235-9482483(+)$1	1	132	170	16.9901
((..(((((....(((.....)))....))))).))).	chr1:39775218-39775469(+)$1	1	51	89	13.0902
.(....(((.(((((((....))).)))).)))..)..	chr22:21352818-21353168(+)$1	1	217	255	13.1572
(..((((((((.(((.((....)).))).))).)))))	chr9:139368555-139368807(-)$1	1	124	162	11.1945
(((.((((.((.((((....))))))...)))..).))	chr14:21541166-21541409(+)$1	1	187	225	11.1586
)(((((..(((((((((....)))))))))...)))))	chr9:114192746-114193000(-)$1	1	204	242	12.2631
(..(.((((((((((((...))).))..))))))))..	chr17:78319672-78319926(+)$1	1	46	84	11.5842
((.(((.(((((((((((....))))))))))).))).	chr9:117053049-117053291(+)$1	1	17	55	13.8374
((..(((((((.(((((......)))))))))....))	chr1:19467769-19468078(-)$1	1	29	67	11.2814
..(((((((.....(((.....)))....))).)))).	chr20:36642058-36642332(-)$1	1	171	209	12.9897
((((((..(((((.((......))))))).))).))))	chr19:1981017-1981318(+)$1	1	108	146	11.2587
((((((.((((..((((....)))))))).))...)))	chr3:53857727-53857996(-)$1	1	112	150	11.5347
.(((((((..(((.(((....))).)))))).))))..	chr2:32715021-32715291(+)$1	1	142	180	11.0077
..(((.((((..((((......))))..))))..))).	chr2:61575467-61575699(-)$1	1	164	202	11.7230
.((((((((((.(.(((....)))..).))))))))))	chr20:33680331-33680560(-)$1	1	124	162	15.6682
.((((.(((..((((......))))....))).)))).	chr1:70701083-70701319(+)$1	1	185	223	12.9244
((.((....((((.(((......))).))))....)).	chr10:21962433-21962683(+)$1	1	65	103	13.1083
.((((...((((...((......))..)))))))).))	chr16:72992010-72992274(-)$1	1	148	186	12.6492
((((.(((.((((......).)))....))))))).).	chr16:16138206-16138468(+)$1	1	132	170	12.4089
((..((((...((.((......))))..))))...)))	chr2:62933064-62933284(+)$1	1	136	174	12.5576
(((((((...(((.(((...))).))))))))))....	chr1:19446698-19446941(-)$1	1	171	209	12.9916
((.(.(((((((.((((....))))....))))))).)	chr16:18478871-18479140(-)$1	1	185	223	12.3172
((.(((.(((..(.((....)).)..))).))).))).	chr1:52703362-52703644(+)$1	1	119	157	12.3330
((.(((.((((.(((.(......).))))))).)))))	chr9:117044636-117044853(+)$1	1	111	149	12.9177
.((((.((((((((((......))))))))))..))))	chr2:97260687-97260948(-)$1	1	208	246	13.3864
((.((((.((((...((.....))...)))).))))..	chr16:58622611-58622866(-)$1	1	102	140	12.8299

#PSSM
b : 0.15	c : 0.11	e : 0.11	d : 0.11	g : 0.11	f : 0.08	: : 0.08	$ : 0.03	! : 0.03	# : 0.03	[ : 0.03	w : 0.01	" : 0.01	i : 0.01	= : 0.01	
d : 0.20	b : 0.15	c : 0.11	g : 0.11	e : 0.10	! : 0.08	f : 0.06	= : 0.05	$ : 0.03	a : 0.03	i : 0.01	# : 0.01	
d : 0.20	[ : 0.20	! : 0.16	g : 0.11	c : 0.08	e : 0.06	= : 0.05	$ : 0.01	f : 0.01	i : 0.01	" : 0.01	b : 0.01	# : 0.01	
d : 0.22	c : 0.15	! : 0.13	g : 0.11	e : 0.10	= : 0.06	b : 0.05	# : 0.03	[ : 0.03	a : 0.03	h : 0.01	i : 0.01	" : 0.01	
c : 0.22	d : 0.20	e : 0.13	g : 0.10	b : 0.06	! : 0.05	= : 0.05	[ : 0.05	# : 0.03	a : 0.03	h : 0.01	i : 0.01	" : 0.01	
c : 0.27	d : 0.11	g : 0.11	e : 0.10	" : 0.08	! : 0.08	[ : 0.08	= : 0.05	# : 0.05	h : 0.01	b : 0.01	
c : 0.22	! : 0.13	d : 0.11	g : 0.11	[ : 0.10	" : 0.08	= : 0.06	e : 0.06	# : 0.03	: : 0.01	h : 0.01	f : 0.01	
c : 0.22	d : 0.15	" : 0.11	[ : 0.10	= : 0.10	e : 0.08	! : 0.06	g : 0.06	a : 0.01	h : 0.01	f : 0.01	b : 0.01	# : 0.01	
c : 0.28	d : 0.20	= : 0.10	[ : 0.06	e : 0.06	g : 0.06	b : 0.05	" : 0.05	h : 0.01	f : 0.01	a : 0.01	i : 0.01	! : 0.01	# : 0.01	
c : 0.23	d : 0.22	= : 0.10	g : 0.08	" : 0.08	[ : 0.06	b : 0.05	e : 0.03	! : 0.03	h : 0.01	f : 0.01	# : 0.01	i : 0.01	$ : 0.01	
d : 0.22	c : 0.22	= : 0.10	! : 0.08	g : 0.06	[ : 0.05	" : 0.05	# : 0.05	e : 0.03	b : 0.03	a : 0.01	h : 0.01	f : 0.01	i : 0.01	$ : 0.01	
[ : 0.22	d : 0.16	" : 0.08	= : 0.08	! : 0.08	b : 0.06	g : 0.06	# : 0.06	c : 0.06	e : 0.03	f : 0.01	i : 0.01	$ : 0.01	
a : 0.16	d : 0.15	c : 0.13	" : 0.11	b : 0.08	= : 0.08	# : 0.08	! : 0.06	e : 0.03	g : 0.01	i : 0.01	$ : 0.01	[ : 0.01	
[ : 0.23	d : 0.15	" : 0.11	c : 0.10	= : 0.08	# : 0.06	! : 0.06	o : 0.05	b : 0.03	g : 0.01	a : 0.01	i : 0.01	e : 0.01	$ : 0.01	
c : 0.45	b : 0.11	d : 0.11	o : 0.06	" : 0.06	= : 0.05	# : 0.03	g : 0.01	[ : 0.01	! : 0.01	i : 0.01	e : 0.01	
c : 0.44	b : 0.18	o : 0.10	d : 0.08	= : 0.05	[ : 0.05	g : 0.01	l : 0.01	# : 0.01	i : 0.01	e : 0.01	
c : 0.42	o : 0.23	b : 0.10	m : 0.06	= : 0.03	a : 0.03	d : 0.03	l : 0.01	n : 0.01	i : 0.01	e : 0.01	
m : 0.37	o : 0.32	n : 0.10	l : 0.08	c : 0.06	b : 0.03	= : 0.01	
m : 0.44	o : 0.32	n : 0.11	l : 0.10	c : 0.01	
m : 0.44	o : 0.27	n : 0.11	l : 0.10	a : 0.05	c : 0.01	
m : 0.37	o : 0.25	n : 0.11	c : 0.08	d : 0.03	] : 0.03	l : 0.03	g : 0.01	2 : 0.01	a : 0.01	b : 0.01	
c : 0.37	o : 0.22	n : 0.10	d : 0.10	m : 0.06	b : 0.03	] : 0.03	g : 0.01	2 : 0.01	= : 0.01	i : 0.01	
c : 0.47	b : 0.20	d : 0.11	o : 0.08	= : 0.05	g : 0.01	n : 0.01	i : 0.01	] : 0.01	
c : 0.44	b : 0.20	d : 0.11	] : 0.06	= : 0.05	a : 0.05	g : 0.01	3 : 0.01	i : 0.01	e : 0.01	
] : 0.20	3 : 0.16	c : 0.15	d : 0.10	2 : 0.10	b : 0.08	4 : 0.06	= : 0.05	e : 0.03	g : 0.01	i : 0.01	
3 : 0.20	2 : 0.16	c : 0.11	4 : 0.11	d : 0.10	= : 0.06	a : 0.06	b : 0.06	e : 0.03	g : 0.01	] : 0.01	i : 0.01	
3 : 0.22	d : 0.13	2 : 0.13	c : 0.13	4 : 0.11	= : 0.06	] : 0.06	e : 0.05	g : 0.01	b : 0.01	i : 0.01	a : 0.01	
d : 0.22	c : 0.15	4 : 0.11	= : 0.08	e : 0.08	2 : 0.06	3 : 0.06	b : 0.05	a : 0.05	g : 0.03	h : 0.01	f : 0.01	i : 0.01	] : 0.01	
d : 0.28	c : 0.16	= : 0.10	] : 0.08	e : 0.08	g : 0.08	3 : 0.05	4 : 0.05	b : 0.03	h : 0.01	f : 0.01	i : 0.01	
c : 0.27	d : 0.22	] : 0.11	= : 0.10	g : 0.10	e : 0.06	2 : 0.03	3 : 0.01	h : 0.01	f : 0.01	a : 0.01	i : 0.01	
c : 0.32	d : 0.16	g : 0.11	= : 0.10	2 : 0.06	e : 0.06	b : 0.05	3 : 0.03	] : 0.03	h : 0.01	f : 0.01	
c : 0.27	d : 0.15	g : 0.11	= : 0.08	3 : 0.06	e : 0.06	b : 0.05	4 : 0.05	] : 0.05	2 : 0.03	h : 0.01	a : 0.01	f : 0.01	
] : 0.13	d : 0.13	2 : 0.13	g : 0.13	c : 0.13	3 : 0.10	4 : 0.08	= : 0.06	e : 0.03	h : 0.01	f : 0.01	
d : 0.18	2 : 0.18	g : 0.15	c : 0.08	4 : 0.08	3 : 0.08	] : 0.08	e : 0.06	= : 0.05	h : 0.01	
d : 0.20	c : 0.18	g : 0.11	4 : 0.10	e : 0.08	2 : 0.06	= : 0.05	b : 0.05	3 : 0.03	f : 0.01	h : 0.01	i : 0.01	> : 0.01	] : 0.01	a : 0.01	
c : 0.18	d : 0.16	b : 0.10	] : 0.10	e : 0.08	g : 0.08	= : 0.06	4 : 0.05	f : 0.03	3 : 0.03	a : 0.03	i : 0.01	2 : 0.01	> : 0.01	
c : 0.18	g : 0.10	d : 0.10	b : 0.08	e : 0.08	2 : 0.06	f : 0.06	] : 0.06	= : 0.06	3 : 0.05	a : 0.03	[ : 0.01	i : 0.01	> : 0.01	: : 0.01	4 : 0.01	
d : 0.10	3 : 0.10	2 : 0.08	f : 0.08	] : 0.08	g : 0.08	e : 0.08	= : 0.06	c : 0.06	4 : 0.05	a : 0.03	b : 0.03	> : 0.03	: : 0.03	i : 0.01	D : 0.01	5 : 0.01	

#score	753.7064153508151
#seq	59
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_CDS_m2_run1.txt

#BEAR
eeeee[a[ffffff[a[a[bbeeeee[a[cc	chr17:79913316-79913634(-)$1	318	53	84	10.3007
[ddddccc[ffffffccc[ggggggg[a[ee	chr3:52567609-52567899(-)$1	290	92	123	9.3143
dd!!ccc[ffffffeeeee!!ddddbb[eee	chr9:136223066-136223330(-)$1	264	61	92	8.2052
hhhhhhhh]ccceeeee"""ccc[ccc####	chr1:110169640-110169927(+)$1	287	175	206	8.7232
eeeee[ggggggg[hhhhhhhheeeeecccp	chr19:460830-461083(-)$1	253	47	78	7.8770
ddd[cccggggggg!!bb[eeeee[ffffff	chr12:121416307-121416541(-)$1	234	137	168	8.7554
iiiiii:hhhhhhhh[bb!!ggggggg"""c	chr19:2272816-2273083(+)$1	267	103	134	8.5751
gggggggeeeeehhhhhhhhcccccc$$$$$	chr17:36878231-36878475(+)$1	244	118	149	8.4716
hffffffggggggg[ccc[bb[eeeee&&&&	chr8:144672182-144672445(-)$1	263	164	195	8.3803
ccc[cccggggggg[==========ffffff	chr17:73900659-73900953(-)$1	294	74	105	9.7282
eeee22iiiiiiiii:bb[ccc[dddddddd	chr16:67231975-67232212(+)$1	237	119	150	7.5011
ggg[a[bb[ccc!!ccc[eeeee[dddd"""	chr16:89894848-89895104(+)$1	256	27	58	9.6945
eee[dddd[iiiiiiiii$$$$$eeeee!!b	chr16:89895051-89895309(+)$1	258	133	164	9.2727
bb22ddddggggggg"""ccc[dddd[bbcc	chr19:35500162-35500505(+)$1	343	88	119	8.0614
c[ccc"""ffffff[ccc[cccffffffooo	chr7:150777749-150777982(-)$1	233	73	104	8.0775
hhh[ccc[gggggggccc[cccdddd[a"""	chr12:58005524-58005834(+)$1	310	73	104	12.7444
[iiiiiiiii!!bb[bb!!bbeeeee[a!!d	chr19:45801024-45801274(+)$1	250	133	164	10.1853
ggg::bb!!ffffffccc[iiiiiiiii"""	chr17:16347304-16347550(+)$1	246	89	120	8.4110
ggggggg[ffffff[bb[==========%%%	chr19:460530-460774(-)$1	244	22	53	9.2765
dd!!ggggggg[ggggggg[a[dddd####g	chr9:99212744-99212989(+)$1	245	39	70	11.8674
ddd[a[eeeee[ccc####bb[dddd"""a"	chr7:77166705-77166977(+)$1	272	58	89	10.1599
####ccc[ggggggg####a[ddddeeeeed	chr2:231902406-231902685(+)$1	279	122	153	9.3606
b[a[dddddddd[ggggggg"""ccc$$$$$	chr19:55899450-55899724(+)$1	274	121	152	8.8485
fff[cccdddd####ccc[bb[ddddcccll	chr22:39134582-39134837(+)$1	255	97	128	7.8579
bbbb[bb[gggggggbb"""bb[eeeee"""	chr14:102786104-102786370(+)$1	266	57	88	9.1196
hhhhhha[dddd"""ccciiiiiiiii####	chr1:227164984-227165296(+)$1	312	166	197	9.3381
eeee"""a[============!!bb!!a[cc	chr9:74979420-74979699(-)$1	279	12	43	10.2458
ba[dddd[ffffff!!dddd####eeeee[a	chr5:176981025-176981295(-)$1	270	113	144	7.6599
ddddccc[ccca[eeeee[ccc[ccc[a!!e	chr6:34857057-34857318(+)$1	261	55	86	9.9960
eeeee]ffffffhhhhhhhh!!dddd[====	chr17:46985953-46986204(+)$1	251	49	80	9.0411
ggggg[ffffff[ffffff"""dddd[ccc'	chr14:24780791-24781029(+)$1	238	118	149	8.8529
ggggggg[eeeee[eeeee####dddd####	chr6:30709918-30710208(-)$1	290	74	105	10.1451
]iiiiiiiiicccggggggg]adddd:dddd	chr2:128180680-128180964(+)$1	284	141	172	7.8627
======="""ffffff"""bba[dddd!!bb	chr16:4660094-4660317(-)$1	223	99	130	9.5974
ffffffgggggggddddcccaeeeee[cccp	chr22:31741485-31741706(-)$1	221	135	166	7.6178
ggggggg[ggggggg[ccc[dddd[ccc!!a	chr2:42275202-42275460(+)$1	258	88	119	11.0343
eeeedddddddda[aiiiiiiiii[ccc[cc	chr19:1254002-1254271(+)$1	269	72	103	8.0791
eee]===========]accc[eeeee[bb[d	chr1:28845142-28845411(+)$1	269	102	133	9.6187
ggggglllggggggg]a]ccc:dddd[a[a=	chr20:61847050-61847321(-)$1	271	17	48	8.4406
eeeeccc"""ccc[ccc[ccc[dddd[ccc!	chr15:78369842-78370059(-)$1	217	81	112	10.4398
ccc[bb!!ggggggg[bb[bb[gggggggcc	chr12:132402900-132403145(+)$1	245	65	96	9.5300
eeeee]ffffffhhhhhhhh!!dddd[====	chr17:46985879-46986153(+)$1	274	123	154	9.0411
eeeeccc"""ccc[ccc[ccc[dddd[ccc!	chr15:78369834-78370042(-)$1	208	64	95	10.4398
iiiiiiiiggggggg!!eeeee[eeeee"""	chr16:24741064-24741358(+)$1	294	171	202	10.8198
eea[ffffff####eeeee[dddddddd!!b	chr21:47565651-47565894(-)$1	243	88	119	8.1948
ddddcccccc[eeeeedddd[ddddbb!!dd	chr9:80646039-80646327(-)$1	288	6	37	7.3638
b]iiiiiiiii============[bb[a!!h	chr2:231902513-231902748(+)$1	235	97	128	10.5320
!!a[ffffff[ddddccc[dddddddd[a!!	chr22:50722318-50722570(-)$1	252	12	43	8.8962
ddddccc[hhhhhhhhbb"""ddddccc[bb	chr13:114144563-114144864(-)$1	301	145	176	8.5048
ddd[bb!!ffffff[ccc[ffffff$$$$$b	chr22:37964575-37964818(+)$1	243	46	77	8.5795
#bb[ccc[ggggggg^^^^^^^^^^^^^^^^	chr14:105173889-105174168(+)$1	279	13	44	7.5908
ddd[bbffffffbb!!bb[a[eeeee$$$$$	chr19:1104601-1104871(+)$1	270	129	160	9.0810
ooooa]a]gggggggeeeee[eeeee[a"""	chr1:27022734-27023050(+)$1	316	62	93	9.0472
clllccc==========[ggggggg!!bb[g	chr2:42275452-42275696(+)$1	244	105	136	8.6334
ddd####===========[bb!!ccc####c	chr1:2160039-2160323(+)$1	284	130	161	11.2101
eeeee####iiiiiiiii[eeeeecccoooo	chr11:124669937-124670179(-)$1	242	92	123	8.7023
========ggggggg]a22cccccc!!hhhh	chr2:231902758-231902992(+)$1	234	115	146	7.9118
ccc[ccc[dddd[ccc!!ccc[a[dddd!!c	chr15:78369860-78370070(-)$1	210	106	137	9.9207

#otherMatches

#Seq PSSM
GCUCUGAGCCUGGGGUGGGGGGCACUGCAGG	chr17:79913316-79913634(-)$1	318	53	84	10.3007
gcgggcggcgggcuggccgagggcagcgcgg	chr3:52567609-52567899(-)$1	290	92	123	9.3143
gccgggugcggggugcggggugcggggugcg	chr9:136223066-136223330(-)$1	264	61	92	8.2052
UGCGCUGGAGCAGCACCCGUAUGAGCACUGU	chr1:110169640-110169927(+)$1	287	175	206	8.7232
GGCGCAGCGCCCGGUCGGGCUCCGUCGGGCG	chr19:460830-461083(-)$1	253	47	78	7.8770
ACCCUGGCCCCAGCGGCCCGUGAAUCAGGGC	chr12:121416307-121416541(-)$1	234	137	168	8.7554
GCGGGCGGGGGGUUCUGGUCGGCAGGGGUUC	chr19:2272816-2273083(+)$1	267	103	134	8.5751
CUGGCAGGCAGUGGGGGCCUGCCCCUCAAUG	chr17:36878231-36878475(+)$1	244	118	149	8.4716
CUGCUUGCUUUUUAUCGCUGUGUCCGGAAGA	chr8:144672182-144672445(-)$1	263	164	195	8.3803
GGCAGCUCUGCGGGGGGGGGGGGGGGGGCUG	chr17:73900659-73900953(-)$1	294	74	105	9.7282
CCCACCCGACCCCUACAGAGCUUGAGAGCCA	chr16:67231975-67232212(+)$1	237	119	150	7.5011
GGCGGCCAGGCUGACCCUGCGCGGCGGAAGG	chr16:89894848-89895104(+)$1	256	27	58	9.6945
gggagcccgaggccgcgggugaggccggggg	chr16:89895051-89895309(+)$1	258	133	164	9.2727
UGGGGUGGGGAGAGGGCUAGUGGGGGCUGGC	chr19:35500162-35500505(+)$1	343	88	119	8.0614
CGUCCGGGCGGCUAUCUAGGGGCUGCUGGGA	chr7:150777749-150777982(-)$1	233	73	104	8.0775
cggcgccguccccgccccgccccccgUGAUU	chr12:58005524-58005834(+)$1	310	73	104	12.7444
ggccccgccccACCACCAACCUCUUCACCAA	chr19:45801024-45801274(+)$1	250	133	164	10.1853
CGACAGGUCCACUGUGUUGUCUGGGGGGCUU	chr17:16347304-16347550(+)$1	246	89	120	8.4110
ccugcgagccccgcugcgccgcgcccugucc	chr19:460530-460774(-)$1	244	22	53	9.2765
CCAGCCGGGGCCUCGGGCCACAGAGCCGGCG	chr9:99212744-99212989(+)$1	245	39	70	11.8674
GACGUGCUGGGGGAACGAGCUGGGGAAGACG	chr7:77166705-77166977(+)$1	272	58	89	10.1599
gagggcggcgagggcggcuggggcggcgggg	chr2:231902406-231902685(+)$1	279	122	153	9.3606
GUGUAUGGGCUGAGCCUUGCUCUGCUCCCCC	chr19:55899450-55899724(+)$1	274	121	152	8.8485
CGGAUGCGGGCAGAGAGGCGGACCACGGCGA	chr22:39134582-39134837(+)$1	255	97	128	7.8579
cCCGGCUCCUCCGGGCCAGAGCGGCAGCGUC	chr14:102786104-102786370(+)$1	266	57	88	9.1196
UCUGGCCGUGGGCCUGGGCUUCGGGGCACUG	chr1:227164984-227165296(+)$1	312	166	197	9.3381
UCCCGGAGGCCUCGGCCCGGCCUCAUCGUGC	chr9:74979420-74979699(-)$1	279	12	43	10.2458
GGGCGGGGUUGGGGAUGGGCCAUCCUGCCGC	chr5:176981025-176981295(-)$1	270	113	144	7.6599
GUUUGGGAGCCCGAGCAGGCUCGGCUGCAGC	chr6:34857057-34857318(+)$1	261	55	86	9.9960
ggcggcggcggcggcagcgggcggggccggg	chr17:46985953-46986204(+)$1	251	49	80	9.0411
GUGGGAUGGAGAAGGACGGUCCGGAAUGGGA	chr14:24780791-24781029(+)$1	238	118	149	8.8529
AGGGAAAAGCCUUAGCGGACCCAUGGGUGUA	chr6:30709918-30710208(-)$1	290	74	105	10.1451
AGCUGCCCGCGCCCUCCCCUGCCCGCAGAGG	chr2:128180680-128180964(+)$1	284	141	172	7.8627
GGGCUGGGAAAGCCUCGUGGCCCCAGGCACC	chr16:4660094-4660317(-)$1	223	99	130	9.5974
CGCUUCGUGCGGCCCGUCUGGCUGCUACACA	chr22:31741485-31741706(-)$1	221	135	166	7.6178
ccggggccggggagccgcgcggggccggccg	chr2:42275202-42275460(+)$1	258	88	119	11.0343
GCCCCAGGUCACAGCGCGGGGGGACUGGGCC	chr19:1254002-1254271(+)$1	269	72	103	8.0791
GGAGCCCUGCCCGGGAGAGGGUGGGUCGUAG	chr1:28845142-28845411(+)$1	269	102	133	9.6187
CCUCUAGGGGAGGCCCGAgccggcgggcgcc	chr20:61847050-61847321(-)$1	271	17	48	8.4406
cccgggcggaggagggcggcggcggcggcga	chr15:78369842-78370059(-)$1	217	81	112	10.4398
GGGAGUCUGUGGGGGAUGGAUGGGGGCCACG	chr12:132402900-132403145(+)$1	245	65	96	9.5300
ggcggcggcggcggcagcgggcggggccggg	chr17:46985879-46986153(+)$1	274	123	154	9.0411
cccgggcggaggagggcggcggcggcggcga	chr15:78369834-78370042(-)$1	208	64	95	10.4398
cggcggcggcagcagaggcggcggcgccggG	chr16:24741064-24741358(+)$1	294	171	202	10.8198
GCCUUCGUGGGGGAGGUGGGUGCCCGCUCUG	chr21:47565651-47565894(-)$1	243	88	119	8.1948
ggcccuggccgccgcccccgcggcgguuccc	chr9:80646039-80646327(-)$1	288	6	37	7.3638
UGCCGCGCGUCGUCGCUGGCCGCCCGGGAGC	chr2:231902513-231902748(+)$1	235	97	128	10.5320
GGGGGCCAcgggcgcaguggggggcgggcag	chr22:50722318-50722570(-)$1	252	12	43	8.8962
CUGUAGGGGCCUUGGGGCAGGGGCCGGGGCC	chr13:114144563-114144864(-)$1	301	145	176	8.5048
GCUGGGAUGGCGGCCACCACUACCCAGAGAU	chr22:37964575-37964818(+)$1	243	46	77	8.5795
CAGUGCCGAGCCCCCUCCCCCUCCCCCACCA	chr14:105173889-105174168(+)$1	279	13	44	7.5908
GGUAUGGGCCGCGCGGGCGCAGGCUCCCCCG	chr19:1104601-1104871(+)$1	270	129	160	9.0810
ggagggcagcccgggggacugggccccgggg	chr1:27022734-27023050(+)$1	316	62	93	9.0472
GGGCCccgggcccggggcgggccggccggag	chr2:42275452-42275696(+)$1	244	105	136	8.6334
cgggagcgggagcggccgggggagccggagc	chr1:2160039-2160323(+)$1	284	130	161	11.2101
GGGGGUCUCGGGCUGGGGCUGGGGGGCCGCA	chr11:124669937-124670179(-)$1	242	92	123	8.7023
CGCCUGCAGGGCCCUGCAAGCCGCCGGAGCC	chr2:231902758-231902992(+)$1	234	115	146	7.9118
ggcggcggcggcggcgagggcgcggcgcagg	chr15:78369860-78370070(-)$1	210	106	137	9.9207

#DB
(((((.(.((((((.(.(.(((((((.(.((	chr17:79913316-79913634(-)$1	1	53	84	10.3007
.(((((((.(((((((((.(((((((.(.((	chr3:52567609-52567899(-)$1	1	92	123	9.3143
((..(((.(((((((((((..((((((.(((	chr9:136223066-136223330(-)$1	1	61	92	8.2052
)))))))).)))(((((...(((.(((....	chr1:110169640-110169927(+)$1	1	175	206	8.7232
(((((.(((((((.((((((((((((((((.	chr19:460830-461083(-)$1	1	47	78	7.8770
(((.((((((((((..((.(((((.((((((	chr12:121416307-121416541(-)$1	1	137	168	8.7554
)))))).((((((((.((..(((((((...(	chr19:2272816-2273083(+)$1	1	103	134	8.5751
((((((((((((((((((((((((((.....	chr17:36878231-36878475(+)$1	1	118	149	8.4716
)(((((((((((((.(((.((.(((((....	chr8:144672182-144672445(-)$1	1	164	195	8.3803
(((.((((((((((.((((((((((((((((	chr17:73900659-73900953(-)$1	1	74	105	9.7282
))))..))))))))).((.(((.((((((((	chr16:67231975-67232212(+)$1	1	119	150	7.5011
(((.(.((.(((..(((.(((((.((((...	chr16:89894848-89895104(+)$1	1	27	58	9.6945
(((.((((.(((((((((.....(((((..(	chr16:89895051-89895309(+)$1	1	133	164	9.2727
))..))))(((((((...(((.((((.((((	chr19:35500162-35500505(+)$1	1	88	119	8.0614
(.(((...((((((.(((.(((((((((...	chr7:150777749-150777982(-)$1	1	73	104	8.0775
(((.(((.((((((((((.(((((((.(...	chr12:58005524-58005834(+)$1	1	73	104	12.7444
.(((((((((..((.((..(((((((.(..(	chr19:45801024-45801274(+)$1	1	133	164	10.1853
)))..((..(((((((((.(((((((((...	chr17:16347304-16347550(+)$1	1	89	120	8.4110
(((((((.((((((.((.((((((((((...	chr19:460530-460774(-)$1	1	22	53	9.2765
((..(((((((.(((((((.(.((((....(	chr9:99212744-99212989(+)$1	1	39	70	11.8674
(((.(.(((((.(((....((.((((...(.	chr7:77166705-77166977(+)$1	1	58	89	10.1599
....(((.(((((((....(.((((((((((	chr2:231902406-231902685(+)$1	1	122	153	9.3606
(.(.((((((((.(((((((...(((.....	chr19:55899450-55899724(+)$1	1	121	152	8.8485
(((.(((((((....(((.((.(((((((..	chr22:39134582-39134837(+)$1	1	97	128	7.8579
((((.((.(((((((((...((.(((((...	chr14:102786104-102786370(+)$1	1	57	88	9.1196
(((((((.((((...((((((((((((....	chr1:227164984-227165296(+)$1	1	166	197	9.3381
((((...(.((((((((((((..((..(.((	chr9:74979420-74979699(-)$1	1	12	43	10.2458
((.((((.((((((..((((....(((((.(	chr5:176981025-176981295(-)$1	1	113	144	7.6599
))))(((.((((.(((((.(((.(((.(..(	chr6:34857057-34857318(+)$1	1	55	86	9.9960
))))).))))))((((((((..((((.((((	chr17:46985953-46986204(+)$1	1	49	80	9.0411
(((((.((((((.((((((...((((.(((.	chr14:24780791-24781029(+)$1	1	118	149	8.8529
(((((((.(((((.(((((....((((....	chr6:30709918-30710208(-)$1	1	74	105	10.1451
.))))))))))))))))))).))))).((((	chr2:128180680-128180964(+)$1	1	141	172	7.8627
(((((((...((((((...(((.((((..((	chr16:4660094-4660317(-)$1	1	99	130	9.5974
))))))((((((((((((((((((((.(((.	chr22:31741485-31741706(-)$1	1	135	166	7.6178
(((((((.(((((((.(((.((((.(((..(	chr2:42275202-42275460(+)$1	1	88	119	11.0343
(((((((((((((.((((((((((.(((.((	chr19:1254002-1254271(+)$1	1	72	103	8.0791
))).))))))))))).)(((.(((((.((.(	chr1:28845142-28845411(+)$1	1	102	133	9.6187
(((((...))))))).).))).((((.(.((	chr20:61847050-61847321(-)$1	1	17	48	8.4406
(((((((...(((.(((.(((.((((.(((.	chr15:78369842-78370059(-)$1	1	81	112	10.4398
(((.((..(((((((.((.((.(((((((((	chr12:132402900-132403145(+)$1	1	65	96	9.5300
))))).))))))((((((((..((((.((((	chr17:46985879-46986153(+)$1	1	123	154	9.0411
(((((((...(((.(((.(((.((((.(((.	chr15:78369834-78370042(-)$1	1	64	95	10.4398
))))))))(((((((..(((((.(((((...	chr16:24741064-24741358(+)$1	1	171	202	10.8198
(((.((((((....(((((.((((((((..(	chr21:47565651-47565894(-)$1	1	88	119	8.1948
((((((((((.(((((((((.((((((..((	chr9:80646039-80646327(-)$1	1	6	37	7.3638
).)))))))))((((((((((((.((.(..(	chr2:231902513-231902748(+)$1	1	97	128	10.5320
..(.((((((.(((((((.((((((((.(..	chr22:50722318-50722570(-)$1	1	12	43	8.8962
(((((((.((((((((((...(((((((.((	chr13:114144563-114144864(-)$1	1	145	176	8.5048
(((.((..((((((.(((.((((((.....(	chr22:37964575-37964818(+)$1	1	46	77	8.5795
.((.(((.(((((((................	chr14:105173889-105174168(+)$1	1	13	44	7.5908
(((.((((((((((..((.(.(((((.....	chr19:1104601-1104871(+)$1	1	129	160	9.0810
....).).)))))))(((((.(((((.(...	chr1:27022734-27023050(+)$1	1	62	93	9.0472
(...)))((((((((((.(((((((..((.(	chr2:42275452-42275696(+)$1	1	105	136	8.6334
(((....(((((((((((.((..(((....(	chr1:2160039-2160323(+)$1	1	130	161	11.2101
(((((....(((((((((.((((((((....	chr11:124669937-124670179(-)$1	1	92	123	8.7023
))))))))))))))).)..)))(((..((((	chr2:231902758-231902992(+)$1	1	115	146	7.9118
(((.(((.((((.(((..(((.(.((((..(	chr15:78369860-78370070(-)$1	1	106	137	9.9207

#PSSM
e : 0.22	d : 0.17	g : 0.13	c : 0.08	b : 0.08	h : 0.06	[ : 0.03	i : 0.03	# : 0.03	f : 0.03	= : 0.03	] : 0.01	! : 0.01	o : 0.01	
e : 0.22	d : 0.18	g : 0.13	i : 0.06	h : 0.05	f : 0.05	c : 0.05	b : 0.05	[ : 0.03	= : 0.03	# : 0.01	a : 0.01	] : 0.01	! : 0.01	o : 0.01	l : 0.01	
e : 0.20	d : 0.15	g : 0.13	i : 0.08	c : 0.06	h : 0.05	f : 0.05	a : 0.05	! : 0.03	b : 0.03	= : 0.03	2 : 0.01	# : 0.01	[ : 0.01	o : 0.01	l : 0.01	
[ : 0.25	e : 0.17	g : 0.10	d : 0.08	i : 0.08	! : 0.03	h : 0.03	f : 0.03	# : 0.03	= : 0.03	2 : 0.01	c : 0.01	: : 0.01	b : 0.01	] : 0.01	o : 0.01	l : 0.01	
c : 0.25	g : 0.12	d : 0.10	e : 0.08	i : 0.08	f : 0.06	a : 0.05	= : 0.05	b : 0.05	h : 0.03	2 : 0.01	: : 0.01	[ : 0.01	" : 0.01	# : 0.01	
c : 0.25	[ : 0.08	i : 0.08	g : 0.08	d : 0.08	b : 0.08	f : 0.06	] : 0.05	= : 0.05	h : 0.03	" : 0.03	# : 0.03	2 : 0.01	l : 0.01	
c : 0.25	g : 0.12	f : 0.12	i : 0.08	d : 0.08	a : 0.05	b : 0.05	= : 0.05	" : 0.03	! : 0.03	# : 0.03	h : 0.01	: : 0.01	e : 0.01	l : 0.01	
[ : 0.24	g : 0.10	f : 0.10	i : 0.08	d : 0.08	" : 0.06	= : 0.06	! : 0.05	c : 0.03	h : 0.03	e : 0.03	b : 0.01	a : 0.01	l : 0.01	] : 0.01	# : 0.01	
g : 0.29	f : 0.20	d : 0.08	[ : 0.06	i : 0.06	e : 0.05	" : 0.05	= : 0.05	h : 0.03	c : 0.03	] : 0.01	! : 0.01	# : 0.01	
g : 0.29	f : 0.24	i : 0.10	d : 0.08	c : 0.06	= : 0.06	e : 0.05	" : 0.05	h : 0.03	
g : 0.29	f : 0.22	c : 0.10	d : 0.08	i : 0.06	= : 0.06	e : 0.05	h : 0.03	[ : 0.03	! : 0.01	# : 0.01	
g : 0.27	f : 0.22	c : 0.08	d : 0.08	= : 0.08	e : 0.05	i : 0.05	h : 0.03	[ : 0.03	# : 0.03	! : 0.01	a : 0.01	
g : 0.29	f : 0.15	h : 0.08	= : 0.08	c : 0.06	[ : 0.06	e : 0.05	i : 0.05	b : 0.03	# : 0.03	! : 0.01	" : 0.01	a : 0.01	d : 0.01	
g : 0.29	f : 0.17	[ : 0.08	h : 0.08	= : 0.08	e : 0.05	i : 0.05	b : 0.03	c : 0.03	# : 0.03	d : 0.03	! : 0.01	" : 0.01	
g : 0.24	[ : 0.12	e : 0.10	h : 0.10	c : 0.08	= : 0.08	f : 0.06	! : 0.05	i : 0.05	d : 0.03	# : 0.01	" : 0.01	a : 0.01	
c : 0.22	e : 0.12	h : 0.08	= : 0.08	! : 0.06	[ : 0.05	i : 0.05	b : 0.05	g : 0.05	] : 0.05	# : 0.03	f : 0.03	a : 0.01	: : 0.01	" : 0.01	d : 0.01	^ : 0.01	
c : 0.22	b : 0.15	e : 0.10	= : 0.08	h : 0.06	i : 0.05	g : 0.05	d : 0.05	a : 0.05	" : 0.03	# : 0.03	! : 0.03	[ : 0.01	f : 0.01	^ : 0.01	
c : 0.20	e : 0.10	b : 0.10	[ : 0.08	" : 0.06	h : 0.06	= : 0.06	i : 0.05	g : 0.05	! : 0.03	# : 0.03	d : 0.03	a : 0.01	f : 0.01	] : 0.01	^ : 0.01	2 : 0.01	
[ : 0.27	c : 0.13	e : 0.10	" : 0.06	h : 0.06	= : 0.06	g : 0.06	! : 0.03	# : 0.03	i : 0.03	d : 0.03	$ : 0.01	f : 0.01	^ : 0.01	2 : 0.01	
c : 0.20	b : 0.13	e : 0.08	g : 0.06	" : 0.06	h : 0.06	= : 0.06	i : 0.05	[ : 0.05	d : 0.05	! : 0.03	a : 0.03	$ : 0.01	# : 0.01	f : 0.01	^ : 0.01	
c : 0.20	b : 0.15	[ : 0.08	e : 0.06	= : 0.06	g : 0.05	! : 0.05	i : 0.05	" : 0.05	d : 0.05	a : 0.03	# : 0.03	h : 0.01	$ : 0.01	] : 0.01	f : 0.01	^ : 0.01	
e : 0.17	[ : 0.15	d : 0.12	c : 0.12	! : 0.06	g : 0.05	= : 0.05	i : 0.05	" : 0.03	# : 0.03	a : 0.03	h : 0.01	$ : 0.01	b : 0.01	: : 0.01	f : 0.01	^ : 0.01	
d : 0.32	e : 0.18	[ : 0.08	g : 0.06	c : 0.05	= : 0.05	i : 0.05	f : 0.03	! : 0.03	# : 0.03	$ : 0.01	" : 0.01	^ : 0.01	a : 0.01	
d : 0.37	e : 0.22	c : 0.08	g : 0.06	[ : 0.06	i : 0.05	= : 0.03	f : 0.03	b : 0.01	# : 0.01	^ : 0.01	
d : 0.39	e : 0.20	c : 0.12	g : 0.06	[ : 0.05	= : 0.03	f : 0.03	i : 0.03	b : 0.03	^ : 0.01	
d : 0.32	e : 0.22	c : 0.15	g : 0.05	b : 0.05	f : 0.05	! : 0.05	i : 0.03	= : 0.01	$ : 0.01	^ : 0.01	
[ : 0.27	e : 0.12	d : 0.12	c : 0.10	$ : 0.06	f : 0.05	! : 0.05	b : 0.03	g : 0.03	i : 0.03	# : 0.03	= : 0.01	" : 0.01	: : 0.01	^ : 0.01	
a : 0.15	c : 0.15	# : 0.08	d : 0.08	e : 0.08	$ : 0.06	f : 0.05	b : 0.05	= : 0.05	[ : 0.03	" : 0.03	! : 0.03	& : 0.01	i : 0.01	g : 0.01	^ : 0.01	o : 0.01	h : 0.01	
! : 0.15	" : 0.13	[ : 0.10	c : 0.10	# : 0.08	$ : 0.06	e : 0.05	b : 0.05	f : 0.03	d : 0.03	o : 0.03	= : 0.03	& : 0.01	% : 0.01	g : 0.01	a : 0.01	^ : 0.01	h : 0.01	
c : 0.17	! : 0.13	" : 0.12	# : 0.08	$ : 0.06	e : 0.05	d : 0.05	[ : 0.05	f : 0.03	o : 0.03	a : 0.03	= : 0.03	b : 0.03	& : 0.01	% : 0.01	l : 0.01	^ : 0.01	h : 0.01	
c : 0.13	" : 0.12	d : 0.10	b : 0.08	e : 0.05	# : 0.05	$ : 0.05	= : 0.05	! : 0.05	p : 0.03	f : 0.03	o : 0.03	g : 0.03	a : 0.03	h : 0.03	& : 0.01	% : 0.01	l : 0.01	' : 0.01	^ : 0.01	

#score	530.7403481494641
#seq	58
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_CDS_m3_run1.txt

#BEAR
fff$$$$$cccqqqqqqqqccc22ffff	chr22:38212450-38212698(+)$1	248	197	225	15.6358
ee!!gggggggqqqqqqqqggggggg22	chr12:56361545-56361768(+)$1	223	42	70	16.3248
EEccc[eeeeeqqqqqqqqeeeee]ccc	chr5:141029267-141029556(-)$1	289	152	180	14.8011
b!!dddd[cccqqqqqqqqccc]dddd2	chr22:38026066-38026375(+)$1	309	231	259	16.4467
hccc[dddd[aqqqqqqqqa]dddd]cc	chrX:153226846-153227095(-)$1	249	114	142	15.8720
hhiiiiiiiiiqqqqqqqqiiiiiiiii	chr15:43164694-43164910(-)$1	216	115	143	16.6350
!!iiiiiiiiiqqqqqqqqiiiiiiiii	chr1:28598053-28598337(+)$1	284	25	53	17.2247
ee[bb####bbqqqqqqqqbb22bbeee	chr12:109954577-109954847(+)$1	270	145	173	14.9701
ggggg"""cccqqqqqqqqccc333ggg	chr12:102517531-102517795(+)$1	264	12	40	18.3549
c[dddd[ddddqqqqqqqqdddd333dd	chr9:135144783-135145102(-)$1	319	143	171	17.2299
"ffffff[cccqqqqqqqqccc]fffff	chr8:145659539-145659805(-)$1	266	194	222	16.1031
ffff"""ddddqqqqqqqqdddd4444f	chr17:60629652-60629982(+)$1	330	171	199	16.7990
eeeccc[ddddqqqqqqqqdddd22ccc	chr17:80211018-80211241(-)$1	223	164	192	16.7324
e:ddddeeeeeqqqqqqqqeeeee]ddd	chr10:17735209-17735460(+)$1	251	189	217	15.3532
!!a[dddd[bbqqqqqqqqbb]dddd]a	chr8:124408238-124408527(-)$1	289	252	280	15.9088
!!dddd!!cccqqqqqqqqccc]dddd]	chr19:1251547-1251759(+)$1	212	162	190	17.2354
f$$$$$eeeeeqqqqqqqqeeeee333f	chr7:76132610-76132875(+)$1	265	136	164	15.7773
c"""gggggggqqqqqqqqggggggg22	chr17:80016549-80016758(-)$1	209	43	71	16.1563
ffffddddcccqqqqqqqqccc22dddd	chr22:19960145-19960360(-)$1	215	76	104	16.1337
[==========qqqqqqqq=========	chr5:43529670-43530003(-)$1	333	153	181	17.7759
===========qqqqqqqq=========	chr2:25057187-25057455(-)$1	268	112	140	17.6523
fffff[ddddqqqqqqqqdddd333fff	chr20:62340413-62340636(+)$1	223	109	137	14.0841
======eeeeeqqqqqqqqeeeee]===	chr19:50163991-50164211(-)$1	220	5	33	17.2427
========[bbqqqqqqqqbb=======	chr5:306577-306848(+)$1	271	46	74	17.1695
CCddddeeeeeqqqqqqqqeeeee]ddd	chr10:1042081-1042288(+)$1	207	176	204	14.0271
hhh[eeeee[aqqqqqqqqa]eeeee]h	chr8:48873951-48874183(+)$1	232	73	101	15.8274
!eeeee[ddddqqqqqqqqdddd22eee	chr10:100193725-100193983(-)$1	258	188	216	16.8613
:eeeee!!cccqqqqqqqqccc]eeeee	chr19:3620587-3620814(-)$1	227	32	60	16.3123
"ddddffffffqqqqqqqqffffff>>>	chr6:43746172-43746375(+)$1	203	53	81	14.3212
eeccc[addddqqqqqqqqdddd]a]cc	chr16:88593220-88593491(+)$1	271	234	262	16.8184
"dddd"""cccqqqqqqqqccc4444dd	chr12:123067431-123067644(+)$1	213	50	78	17.6824
d!!ddddddddqqqqqqqqdddd333dd	chr21:45538613-45538829(+)$1	216	16	44	16.9606
""eeeee[cccqqqqqqqqccc]eeeee	chr7:72718093-72718329(-)$1	236	152	180	17.0889
hhhhhh"""bbqqqqqqqqbb333hhhh	chr1:155921566-155921811(-)$1	245	158	186	15.1583
ddd"""eeeeeqqqqqqqqeeeee333d	chr17:80525809-80526067(+)$1	258	204	232	16.8949
hh!!affffffqqqqqqqqffffff333	chr4:1836424-1836672(-)$1	248	69	97	15.2029
eeee!!ccc[aqqqqqqqqaccc22eee	chr10:73579888-73580097(-)$1	209	6	34	16.9873
:eeeee"""bbqqqqqqqqbb333eeee	chr9:33935691-33935916(-)$1	225	47	75	15.7044
eeee"""ddddqqqqqqqqddddeeeee	chr22:19050605-19050815(-)$1	210	33	61	16.8846
[ggggggg[bbqqqqqqqqbb22ggggg	chr8:144887455-144887733(-)$1	278	226	254	16.2958
ddd[a[eeeeeqqqqqqqqeeeee]a]d	chr19:35514350-35514593(+)$1	243	200	228	16.6815
hha[ccc[cccqqqqqqqqccc]ccc]a	chr1:41285041-41285312(+)$1	271	169	197	16.7264
!a[bb[eeeeeqqqqqqqqeeeeebbad	chr9:139341170-139341407(-)$1	237	204	232	15.7393
$$ccc[eeeeeqqqqqqqqeeeeeccc6	chr1:145367721-145367963(+)$1	242	107	135	15.7062
ggdddd[ddddqqqqqqqqdddd]dddd	chr12:123461414-123461663(+)$1	249	109	137	16.5394
ggbb[ccc[bbqqqqqqqqbbccc]bb]	chr1:22169117-22169363(-)$1	246	88	116	15.1795
eeee!!bbcccqqqqqqqqccc333bb2	chr11:67351485-67351723(+)$1	238	126	154	16.6546
cc[dddd[abbqqqqqqqqbb]a]dddd	chr17:80206644-80206851(-)$1	207	81	109	15.9232
eeeee!!ddddqqqqqqqqdddd]eeee	chr1:36411168-36411423(+)$1	255	13	41	16.9841
gggggg[bb[aqqqqqqqqa]bb]gggg	chr1:26601325-26601580(+)$1	255	112	140	15.6869
[dddd[eeeeeqqqqqqqqeeeee]ddd	chr16:81694443-81694670(+)$1	227	38	66	16.7783
eeeee"""cccqqqqqqqqccc]eeeee	chr20:400273-400525(+)$1	252	106	134	17.4673
cccffffffbbqqqqqqqqbb]ffffff	chr16:58612437-58612703(-)$1	266	97	125	14.7594
[ccc"""ddddqqqqqqqqdddd333cc	chr1:155899026-155899284(-)$1	258	206	234	17.7739
ggggggg[cccqqqqqqqqccc]ggggg	chr9:140136372-140136580(+)$1	208	103	131	17.4538

#otherMatches

#Seq PSSM
GUGCAUAGCGAGGAAGACAUUGACCGCU	chr22:38212450-38212698(+)$1	248	197	225	15.6358
GAAAGGAAUAUUUGUAACCAUAUUCCCA	chr12:56361545-56361768(+)$1	223	42	70	16.3248
GCUCAGCCCCAGGAACCUGUGGGGAUGA	chr5:141029267-141029556(-)$1	289	152	180	14.8011
GCAGCAGAugccaagcagugcaccugcc	chr22:38026066-38026375(+)$1	309	231	259	16.4467
UCGGGCUCCGAGUGGCCUGUGGGAGGCU	chrX:153226846-153227095(-)$1	249	114	142	15.8720
AGAAUAUACAAUUUAUGAUUUGUAUGUU	chr15:43164694-43164910(-)$1	216	115	143	16.6350
UGGUUUUUAGUUUCUUGCCAUUAAAAAC	chr1:28598053-28598337(+)$1	284	25	53	17.2247
GAAGUGGGCCCUGCAACAUGGAAGCUCU	chr12:109954577-109954847(+)$1	270	145	173	14.9701
AUAUGAAAUGACCUCUCAUUCACUAUAU	chr12:102517531-102517795(+)$1	264	12	40	18.3549
GUUGGAUUGAGUUUUUGUUCUUAUUUUC	chr9:135144783-135145102(-)$1	319	143	171	17.2299
CGUUCAGCGCCUGCUCCCUGGCCCUGGA	chr8:145659539-145659805(-)$1	266	194	222	16.1031
GUAGUCUGUCAUUCUUCUCUGACUUCUC	chr17:60629652-60629982(+)$1	330	171	199	16.7990
GGGAUGUGAAGCCAGACAACUUCCUCAU	chr17:80211018-80211241(-)$1	223	164	192	16.7324
uagcaaaaagcugaaaucugcuuuguug	chr10:17735209-17735460(+)$1	251	189	217	15.3532
UCGGGAUCGGAGGUGCGGGUCGGAUCGC	chr8:124408238-124408527(-)$1	289	252	280	15.9088
UCGGUACCUGUCCGCACACACACUACCU	chr19:1251547-1251759(+)$1	212	162	190	17.2354
GAAGUCUGCAGUGUCCCUCCUGCAAAAC	chr7:76132610-76132875(+)$1	265	136	164	15.7773
ACCCUUUUGUUCUUUUCCUAGCAAAAUA	chr17:80016549-80016758(-)$1	209	43	71	16.1563
CUGCCACUGGUGGACAAGAGCCUUGGUG	chr22:19960145-19960360(-)$1	215	76	104	16.1337
GUGUCUAAUUUAUAGGUGGAGAUUAGAC	chr5:43529670-43530003(-)$1	333	153	181	17.7759
GGCCGGGGAGGGCCACGAGUUUCCUCGG	chr2:25057187-25057455(-)$1	268	112	140	17.6523
CCCUUUGUUGUCAGAUGCCAACCUUAGG	chr20:62340413-62340636(+)$1	223	109	137	14.0841
CUGGUCGAGGCAGCAGAGGGCCUUAGGU	chr19:50163991-50164211(-)$1	220	5	33	17.2427
CGCCAGGCUCUGAGGGCUGAGGUCUGGU	chr5:306577-306848(+)$1	271	46	74	17.1695
UCUGUUUUUCUUGUAUUUUGGAGAUGAC	chr10:1042081-1042288(+)$1	207	176	204	14.0271
AGGCCGGCCCUGAAAGUUAAUGGCUGUC	chr8:48873951-48874183(+)$1	232	73	101	15.8274
GCCUGCUGUGGACCUACAGCCGCCUGCG	chr10:100193725-100193983(-)$1	258	188	216	16.8613
AUCAGCCACCUGGAGGAGAAGGAGCUGA	chr19:3620587-3620814(-)$1	227	32	60	16.3123
GCACAUAGGAGAGAUGAGCUUCCUACAG	chr6:43746172-43746375(+)$1	203	53	81	14.3212
CCGGGCGCUGCAGCAUGAGGCAGACACU	chr16:88593220-88593491(+)$1	271	234	262	16.8184
CUUGAGAGCCUUAAAAGAUGGGAACAUC	chr12:123067431-123067644(+)$1	213	50	78	17.6824
CCCGUUCUCUGCAGCAUUUCAGAUCAGA	chr21:45538613-45538829(+)$1	216	16	44	16.9606
uuagaccuggagucauuuguuuuggucu	chr7:72718093-72718329(-)$1	236	152	180	17.0889
CUCUGGAUCCUCAACACAAAGCUGUCAG	chr1:155921566-155921811(-)$1	245	158	186	15.1583
UUUAAUGGCUGACAACUCACAGCCUGAA	chr17:80525809-80526067(+)$1	258	204	232	16.8949
CCACCAAAGACUUCUCUGUGUUUUUCCA	chr4:1836424-1836672(-)$1	248	69	97	15.2029
AGCACGAGGUCCCAGCAAAGUCUGAUGU	chr10:73579888-73580097(-)$1	209	6	34	16.9873
AUGGUGGUGGUCGAAGUCAGCAGACACU	chr9:33935691-33935916(-)$1	225	47	75	15.7044
UGGCUAUCAGUAUGUUAUCACUGGCCGG	chr22:19050605-19050815(-)$1	210	33	61	16.8846
CAUGGUGGAGCCUGAGAACGCGGUCACC	chr8:144887455-144887733(-)$1	278	226	254	16.2958
guguccuccucuguaaaaugaggaagcc	chr19:35514350-35514593(+)$1	243	200	228	16.6815
GCCCAUCGUGACUCCUGACUCAGGGUUG	chr1:41285041-41285312(+)$1	271	169	197	16.7264
CGUAGAGUGUUCCGCCUUAAACGCCUCA	chr9:139341170-139341407(-)$1	237	204	232	15.7393
UUCAGCAAUUGUGGAUCCUUAGUUCUGU	chr1:145367721-145367963(+)$1	242	107	135	15.7062
UCCUGGCCCUGAGACCUGGCAGGACCAG	chr12:123461414-123461663(+)$1	249	109	137	16.5394
CGCCCGGCACCAGGUACAGGGGCCAGGA	chr1:22169117-22169363(-)$1	246	88	116	15.1795
CUACACCGUGGUCUAUUUCCCAGUUCGA	chr11:67351485-67351723(+)$1	238	126	154	16.6546
CUCGCAUGUCCACCUCACAGGUAGGUGC	chr17:80206644-80206851(-)$1	207	81	109	15.9232
UAGGUUUUAGCCAUUAUCAGCUGUACUU	chr1:36411168-36411423(+)$1	255	13	41	16.9841
CUUGCUGUGUGAUUCAGAGCCUAGAGCA	chr1:26601325-26601580(+)$1	255	112	140	15.6869
GUUUCAGGCAAUCGCUCCUUUGCUGGAA	chr16:81694443-81694670(+)$1	227	38	66	16.7783
GCGGGAAAGUCCCUGGACAGACACCUGC	chr20:400273-400525(+)$1	252	106	134	17.4673
GCAGGUAAGAUGUGACCGUGUGCUUACC	chr16:58612437-58612703(-)$1	266	97	125	14.7594
UCUCUUAUCUUGUUUAUGGAAGGGUUGG	chr1:155899026-155899284(-)$1	258	206	234	17.7739
GAGCCGUGGCUGGGGACUGGGCGGCGGC	chr9:140136372-140136580(+)$1	208	103	131	17.4538

#DB
(((.....(((........)))..))))	chr22:38212450-38212698(+)$1	1	197	225	15.6358
((..(((((((........)))))))..	chr12:56361545-56361768(+)$1	1	42	70	16.3248
))(((.(((((........))))).)))	chr5:141029267-141029556(-)$1	1	152	180	14.8011
(..((((.(((........))).)))).	chr22:38026066-38026375(+)$1	1	231	259	16.4467
((((.((((.(........).)))).))	chrX:153226846-153227095(-)$1	1	114	142	15.8720
))(((((((((........)))))))))	chr15:43164694-43164910(-)$1	1	115	143	16.6350
..(((((((((........)))))))))	chr1:28598053-28598337(+)$1	1	25	53	17.2247
((.((....((........))..)))))	chr12:109954577-109954847(+)$1	1	145	173	14.9701
(((((...(((........)))...)))	chr12:102517531-102517795(+)$1	1	12	40	18.3549
(.((((.((((........))))...))	chr9:135144783-135145102(-)$1	1	143	171	17.2299
.((((((.(((........))).)))))	chr8:145659539-145659805(-)$1	1	194	222	16.1031
((((...((((........))))....)	chr17:60629652-60629982(+)$1	1	171	199	16.7990
((((((.((((........))))..)))	chr17:80211018-80211241(-)$1	1	164	192	16.7324
).(((((((((........))))).)))	chr10:17735209-17735460(+)$1	1	189	217	15.3532
..(.((((.((........)).)))).)	chr8:124408238-124408527(-)$1	1	252	280	15.9088
..((((..(((........))).)))).	chr19:1251547-1251759(+)$1	1	162	190	17.2354
(.....(((((........)))))...)	chr7:76132610-76132875(+)$1	1	136	164	15.7773
(...(((((((........)))))))..	chr17:80016549-80016758(-)$1	1	43	71	16.1563
(((((((((((........)))..))))	chr22:19960145-19960360(-)$1	1	76	104	16.1337
.((((((((((........)))))))))	chr5:43529670-43530003(-)$1	1	153	181	17.7759
(((((((((((........)))))))))	chr2:25057187-25057455(-)$1	1	112	140	17.6523
(((((.((((........))))...)))	chr20:62340413-62340636(+)$1	1	109	137	14.0841
(((((((((((........))))).)))	chr19:50163991-50164211(-)$1	1	5	33	17.2427
((((((((.((........)))))))))	chr5:306577-306848(+)$1	1	46	74	17.1695
))(((((((((........))))).)))	chr10:1042081-1042288(+)$1	1	176	204	14.0271
(((.(((((.(........).))))).)	chr8:48873951-48874183(+)$1	1	73	101	15.8274
.(((((.((((........))))..)))	chr10:100193725-100193983(-)$1	1	188	216	16.8613
.(((((..(((........))).)))))	chr19:3620587-3620814(-)$1	1	32	60	16.3123
.((((((((((........))))))...	chr6:43746172-43746375(+)$1	1	53	81	14.3212
))(((.(((((........)))).).))	chr16:88593220-88593491(+)$1	1	234	262	16.8184
.((((...(((........)))....))	chr12:123067431-123067644(+)$1	1	50	78	17.6824
(..((((((((........))))...))	chr21:45538613-45538829(+)$1	1	16	44	16.9606
..(((((.(((........))).)))))	chr7:72718093-72718329(-)$1	1	152	180	17.0889
((((((...((........))...))))	chr1:155921566-155921811(-)$1	1	158	186	15.1583
(((...(((((........)))))...)	chr17:80525809-80526067(+)$1	1	204	232	16.8949
((..(((((((........))))))...	chr4:1836424-1836672(-)$1	1	69	97	15.2029
((((..(((.(........))))..)))	chr10:73579888-73580097(-)$1	1	6	34	16.9873
.(((((...((........))...))))	chr9:33935691-33935916(-)$1	1	47	75	15.7044
((((...((((........)))))))))	chr22:19050605-19050815(-)$1	1	33	61	16.8846
.(((((((.((........))..)))))	chr8:144887455-144887733(-)$1	1	226	254	16.2958
(((.(.(((((........))))).).)	chr19:35514350-35514593(+)$1	1	200	228	16.6815
(((.(((.(((........))).))).)	chr1:41285041-41285312(+)$1	1	169	197	16.7264
.(.((.(((((........)))))))))	chr9:139341170-139341407(-)$1	1	204	232	15.7393
..(((.(((((........)))))))).	chr1:145367721-145367963(+)$1	1	107	135	15.7062
))((((.((((........)))).))))	chr12:123461414-123461663(+)$1	1	109	137	16.5394
((((.(((.((........))))).)).	chr1:22169117-22169363(-)$1	1	88	116	15.1795
((((..(((((........)))...)).	chr11:67351485-67351723(+)$1	1	126	154	16.6546
((.((((.(((........)).).))))	chr17:80206644-80206851(-)$1	1	81	109	15.9232
(((((..((((........)))).))))	chr1:36411168-36411423(+)$1	1	13	41	16.9841
((((((.((.(........).)).))))	chr1:26601325-26601580(+)$1	1	112	140	15.6869
.((((.(((((........))))).)))	chr16:81694443-81694670(+)$1	1	38	66	16.7783
(((((...(((........))).)))))	chr20:400273-400525(+)$1	1	106	134	17.4673
)))((((((((........)).))))))	chr16:58612437-58612703(-)$1	1	97	125	14.7594
.(((...((((........))))...))	chr1:155899026-155899284(-)$1	1	206	234	17.7739
(((((((.(((........))).)))))	chr9:140136372-140136580(+)$1	1	103	131	17.4538

#PSSM
e : 0.18	h : 0.10	f : 0.09	! : 0.09	g : 0.09	c : 0.07	" : 0.07	[ : 0.07	= : 0.05	d : 0.05	: : 0.03	E : 0.01	b : 0.01	C : 0.01	$ : 0.01	
e : 0.21	g : 0.10	f : 0.09	! : 0.09	h : 0.09	d : 0.09	c : 0.07	= : 0.07	$ : 0.03	" : 0.03	E : 0.01	[ : 0.01	: : 0.01	C : 0.01	a : 0.01	
d : 0.18	e : 0.18	c : 0.10	f : 0.09	! : 0.07	g : 0.07	= : 0.07	[ : 0.05	i : 0.03	a : 0.03	h : 0.03	$ : 0.01	" : 0.01	b : 0.01	
d : 0.20	e : 0.16	c : 0.10	f : 0.09	g : 0.07	[ : 0.07	= : 0.07	b : 0.05	$ : 0.03	! : 0.03	i : 0.03	" : 0.03	h : 0.01	
d : 0.23	e : 0.12	g : 0.10	c : 0.09	" : 0.07	= : 0.07	f : 0.05	$ : 0.03	[ : 0.03	i : 0.03	b : 0.03	a : 0.03	! : 0.03	h : 0.01	
d : 0.20	[ : 0.12	" : 0.12	g : 0.09	e : 0.09	f : 0.07	= : 0.07	c : 0.05	! : 0.05	$ : 0.03	i : 0.03	# : 0.01	h : 0.01	
e : 0.21	" : 0.14	d : 0.12	[ : 0.09	g : 0.07	f : 0.07	! : 0.05	= : 0.05	c : 0.05	i : 0.03	$ : 0.01	# : 0.01	a : 0.01	b : 0.01	
d : 0.25	e : 0.20	[ : 0.10	" : 0.09	g : 0.05	= : 0.05	f : 0.05	i : 0.03	! : 0.03	c : 0.03	b : 0.03	$ : 0.01	# : 0.01	
c : 0.25	d : 0.21	e : 0.20	[ : 0.07	f : 0.05	g : 0.03	i : 0.03	= : 0.03	" : 0.03	# : 0.01	a : 0.01	b : 0.01	
c : 0.23	d : 0.20	e : 0.18	b : 0.16	[ : 0.07	g : 0.03	i : 0.03	= : 0.03	f : 0.03	
c : 0.23	e : 0.18	d : 0.18	b : 0.16	a : 0.07	g : 0.03	i : 0.03	= : 0.03	f : 0.03	q : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 0.98	d : 0.01	
c : 0.23	d : 0.20	e : 0.18	b : 0.16	a : 0.07	g : 0.03	i : 0.03	= : 0.03	f : 0.03	
c : 0.25	d : 0.20	e : 0.18	b : 0.16	] : 0.05	g : 0.03	i : 0.03	= : 0.03	f : 0.03	
c : 0.27	d : 0.21	e : 0.20	] : 0.05	= : 0.05	g : 0.03	i : 0.03	2 : 0.03	f : 0.03	3 : 0.03	b : 0.01	
d : 0.21	e : 0.20	] : 0.14	3 : 0.09	2 : 0.07	= : 0.05	f : 0.05	g : 0.03	i : 0.03	c : 0.03	4 : 0.01	a : 0.01	b : 0.01	
e : 0.27	3 : 0.14	2 : 0.09	] : 0.09	g : 0.07	d : 0.07	f : 0.07	= : 0.05	i : 0.03	4 : 0.03	c : 0.03	b : 0.01	
3 : 0.14	] : 0.12	d : 0.12	e : 0.12	f : 0.09	g : 0.09	2 : 0.05	= : 0.05	i : 0.03	b : 0.03	4 : 0.03	c : 0.03	a : 0.01	h : 0.01	
e : 0.18	d : 0.16	g : 0.10	3 : 0.10	f : 0.07	c : 0.07	= : 0.07	b : 0.05	] : 0.03	i : 0.03	4 : 0.03	> : 0.01	h : 0.01	a : 0.01	
d : 0.20	e : 0.16	c : 0.10	f : 0.07	g : 0.07	] : 0.07	= : 0.07	3 : 0.05	2 : 0.03	i : 0.03	b : 0.03	4 : 0.01	> : 0.01	h : 0.01	a : 0.01	
d : 0.21	e : 0.16	f : 0.10	c : 0.09	2 : 0.07	g : 0.07	= : 0.07	i : 0.03	a : 0.03	] : 0.03	h : 0.03	> : 0.01	3 : 0.01	6 : 0.01	

#score	898.7027628357966
#seq	55
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_transcript_m2_run2.txt

#BEAR
ggggqqqqqqqqgggg	chr1:173835360-173835588(-)$1	228	168	184	12.8478
ddddqqqqqqqqdddd	chr10:102112033-102112282(+)$1	249	28	44	13.9561
a[bbqqqqqqqqbb]a	chr16:3767355-3767612(-)$1	257	94	110	12.7244
:cccqqqqqqqqccc:	chr8:11705147-11705433(-)$1	286	78	94	11.6649
eeeeqqqqqqqqeeee	chr17:76968289-76968551(-)$1	262	92	108	13.2523
ddddqqqqqqqqdddd	chr17:74557650-74557886(+)$1	236	92	108	13.9561
eeeeqqqqqqqqeeee	chr21:46893716-46893959(+)$1	243	77	93	13.2523
eeeeqqqqqqqqeeee	chr5:109035342-109035586(-)$1	244	149	165	13.2523
ddddqqqqqqqqdddd	chr19:6694523-6694745(-)$1	222	132	148	13.9561
hhhhqqqqqqqqhhhh	chr10:95353498-95353742(-)$1	244	210	226	11.9873
eeeeqqqqqqqqeeee	chr9:116840313-116840548(-)$1	235	79	95	13.2523
g[bbqqqqqqqqbbgg	chr1:19468040-19468279(-)$1	239	170	186	12.6966
[cccqqqqqqqqcccb	chr1:19446597-19446849(-)$1	252	161	177	13.2440
:cccqqqqqqqqccc:	chr5:137896662-137896878(-)$1	216	3	19	11.6649
ddddqqqqqqqqdddd	chr12:57556588-57556830(+)$1	242	54	70	13.9561
ddddqqqqqqqqdddd	chr21:46899887-46900136(+)$1	249	213	229	13.9561
ddddqqqqqqqqdddd	chr19:6714135-6714359(-)$1	224	157	173	13.9561
ddddqqqqqqqqdddd	chr16:16414907-16415189(+)$1	282	259	275	13.9561
ddddqqqqqqqqdddd	chr1:35657872-35658145(-)$1	273	160	176	13.9561
ddddqqqqqqqqdddd	chr1:230839950-230840183(-)$1	233	97	113	13.9561
ddddqqqqqqqqdddd	chr6:132271532-132271758(-)$1	226	143	159	13.9561
c[bbqqqqqqqqbb]c	chr19:3360127-3360340(+)$1	213	109	125	12.7724
ffffqqqqqqqqffff	chr20:61449772-61450004(+)$1	232	78	94	12.0536
ddddqqqqqqqqdddd	chr11:1778533-1778768(-)$1	235	179	195	13.9561
hhhhqqqqqqqqhhhh	chr20:60911307-60911584(-)$1	277	198	214	11.9873
cc[aqqqqqqqqa]cc	chr20:17608143-17608393(-)$1	250	167	183	13.0551
ddddqqqqqqqqdddd	chr17:79918551-79918888(-)$1	337	247	263	13.9561
ddddqqqqqqqqdddd	chr8:17767353-17767605(-)$1	252	155	171	13.9561
b[bbqqqqqqqqbb]b	chr7:45928256-45928520(+)$1	264	129	145	12.3308
eeeeqqqqqqqqeeee	chr6:144803243-144803495(+)$1	252	18	34	13.2523
eeeeqqqqqqqqeeee	chr1:173833910-173834142(-)$1	232	121	137	13.2523
eeeeqqqqqqqqeeee	chr19:13049847-13050072(+)$1	225	84	100	13.2523
eeeeqqqqqqqqeeee	chr9:128003183-128003426(-)$1	243	137	153	13.2523
hh[aqqqqqqqqa]hh	chr3:49160252-49160538(-)$1	286	112	128	12.3848
""bbqqqqqqqqbbff	chr21:46897240-46897494(+)$1	254	44	60	12.3299
%cccqqqqqqqqccc6	chr19:24187192-24187410(-)$1	218	184	200	12.2439
ddddqqqqqqqqdddd	chr19:893455-893689(+)$1	234	148	164	13.9561
:cccqqqqqqqqcccc	chr6:31239335-31239639(-)$1	304	8	24	12.5513
dd[aqqqqqqqqa]dd	chr8:57906013-57906363(-)$1	350	231	247	13.4296
b[bbqqqqqqqqbb]b	chr16:2802588-2802878(+)$1	290	240	256	12.3308
#cccqqqqqqqqccc4	chr6:160492916-160493144(+)$1	228	174	190	13.3147
eeeeqqqqqqqqeeee	chr19:6686074-6686289(-)$1	215	147	163	13.2523
ffffqqqqqqqqffff	chr6:43109569-43109847(+)$1	278	28	44	12.0536
[cccqqqqqqqqccc]	chr12:6619566-6619809(+)$1	243	121	137	13.4369
[cccqqqqqqqqccc]	chr3:133475025-133475271(+)$1	246	23	39	13.4369
ddddqqqqqqqqdddd	chr6:167369764-167370029(-)$1	265	32	48	13.9561
ba[aqqqqqqqqa]a]	chr19:45412200-45412458(+)$1	258	52	68	12.5722
eeeeqqqqqqqqeeee	chr1:979613-979852(+)$1	239	87	103	13.2523
[cccqqqqqqqqccc4	chr9:116997816-116998032(+)$1	216	125	141	13.4315
ddddqqqqqqqqdddd	chr9:116823733-116823969(-)$1	236	212	228	13.9561
eeeeqqqqqqqqeeee	chr19:45411737-45412018(+)$1	281	144	160	13.2523
ddddqqqqqqqqdddd	chr16:2015161-2015395(+)$1	234	107	123	13.9561
[cccqqqqqqqqccc3	chr17:7480100-7480356(+)$1	256	208	224	13.4140
ddddqqqqqqqqdddd	chr17:74557636-74557850(+)$1	214	106	122	13.9561
ddbbqqqqqqqqbb]d	chr1:230846039-230846274(-)$1	235	190	206	13.0729
[cccqqqqqqqqcccc	chr8:27461704-27461930(-)$1	226	126	142	13.4780
c[bbqqqqqqqqbb]c	chr19:3360111-3360327(+)$1	216	125	141	12.7724
eeeeqqqqqqqqeeee	chr14:101200761-101201013(+)$1	252	208	224	13.2523
!!bbqqqqqqqqbb22	chr16:21531535-21531823(-)$1	288	55	71	12.2990
bbbaqqqqqqqqa]bb	chr20:60889758-60889985(-)$1	227	83	99	11.8335
ddddqqqqqqqqdddd	chr9:116999160-116999366(+)$1	206	39	55	13.9561
ddddqqqqqqqqdddd	chr9:116999166-116999409(+)$1	243	3	19	13.9561
!!bbqqqqqqqqbbdd	chr2:11484516-11484760(-)$1	244	65	81	13.0883
ddddqqqqqqqqdddd	chr9:116840348-116840591(-)$1	243	190	206	13.9561
ddddqqqqqqqqdddd	chr8:27463815-27464078(-)$1	263	61	77	13.9561
ggggqqqqqqqqgggg	chr21:9826121-9826349(+)$1	228	40	56	12.8478
eeeeqqqqqqqqeeee	chr17:80196513-80196750(+)$1	237	189	205	13.2523
[cccqqqqqqqqccc]	chr2:203142745-203143009(+)$1	264	187	203	13.4369
ddddqqqqqqqqdddd	chr1:230845698-230845945(-)$1	247	209	225	13.9561
d[bbqqqqqqqqbb]d	chr8:145640036-145640325(-)$1	289	179	195	13.0100
b[bbqqqqqqqqbb]b	chr7:45928138-45928456(+)$1	318	247	263	12.3308
ffffqqqqqqqqffff	chr17:74557092-74557333(+)$1	241	134	150	12.0536
:cccqqqqqqqqccc:	chr21:46888551-46888796(+)$1	245	226	242	11.6649

#otherMatches

#Seq PSSM
UGUUAAUGGUUAAGCA	chr1:173835360-173835588(-)$1	228	168	184	12.8478
CAUCCUUUCCCAGAUG	chr10:102112033-102112282(+)$1	249	28	44	13.9561
GAGUACGACAUGGCGC	chr16:3767355-3767612(-)$1	257	94	110	12.7244
CCGCUUUCUCCCGCGU	chr8:11705147-11705433(-)$1	286	78	94	11.6649
GGCCCUACUGAAGGCC	chr17:76968289-76968551(-)$1	262	92	108	13.2523
GUCUGAAAAUCUGGAC	chr17:74557650-74557886(+)$1	236	92	108	13.9561
UCUGUCUGCAUUUAGG	chr21:46893716-46893959(+)$1	243	77	93	13.2523
ucaccacucuauguga	chr5:109035342-109035586(-)$1	244	149	165	13.2523
GUCGACGCGGAACGGC	chr19:6694523-6694745(-)$1	222	132	148	13.9561
GUUUGGACUAAGGGGC	chr10:95353498-95353742(-)$1	244	210	226	11.9873
GCUCUUGCUGCUGAGC	chr9:116840313-116840548(-)$1	235	79	95	13.2523
GGAGCUUCACAACUCU	chr1:19468040-19468279(-)$1	239	170	186	12.6966
ACUGCACAUCUACAGG	chr1:19446597-19446849(-)$1	252	161	177	13.2440
UGGUAAUACCCCGCCC	chr5:137896662-137896878(-)$1	216	3	19	11.6649
GGCACCAACAAAUGCC	chr12:57556588-57556830(+)$1	242	54	70	13.9561
GGGGUCUGCCCUCCUC	chr21:46899887-46900136(+)$1	249	213	229	13.9561
CACUGAGUUUGAGGUG	chr19:6714135-6714359(-)$1	224	157	173	13.9561
GGGCCAACCUCAGCCU	chr16:16414907-16415189(+)$1	282	259	275	13.9561
GGGCCUAAGUACGCCU	chr1:35657872-35658145(-)$1	273	160	176	13.9561
CAGGACCAUCCACCUG	chr1:230839950-230840183(-)$1	233	97	113	13.9561
UGCAAGUACCAGUGCA	chr6:132271532-132271758(-)$1	226	143	159	13.9561
cgccUUGAACUUGGAg	chr19:3360127-3360340(+)$1	213	109	125	12.7724
UGGGUGUCUUUCCUCA	chr20:61449772-61450004(+)$1	232	78	94	12.0536
GGUGGACCAGAACAUC	chr11:1778533-1778768(-)$1	235	179	195	13.9561
CCCUGGAGUAUUGGGG	chr20:60911307-60911584(-)$1	277	198	214	11.9873
UCCCAGCUCACAGAGA	chr20:17608143-17608393(-)$1	250	167	183	13.0551
GUGGAGAGCUUCCCGC	chr17:79918551-79918888(-)$1	337	247	263	13.9561
cuggcaauuaucccgg	chr8:17767353-17767605(-)$1	252	155	171	13.9561
CGCCUCGUGCUCGGAG	chr7:45928256-45928520(+)$1	264	129	145	12.3308
UCUUGAAAAAAAAAGA	chr6:144803243-144803495(+)$1	252	18	34	13.2523
CAGCAGACUAACGCUG	chr1:173833910-173834142(-)$1	232	121	137	13.2523
CUAAUCCCCCACUUAG	chr19:13049847-13050072(+)$1	225	84	100	13.2523
CUCCUGGUAAGUGGGG	chr9:128003183-128003426(-)$1	243	137	153	13.2523
UCGAGAUGAGGAUGGG	chr3:49160252-49160538(-)$1	286	112	128	12.3848
CGGGGGGCGUGACCGU	chr21:46897240-46897494(+)$1	254	44	60	12.3299
CUGAUCAUCAUUUCAA	chr19:24187192-24187410(-)$1	218	184	200	12.2439
uuuucccucccagaaa	chr19:893455-893689(+)$1	234	148	164	13.9561
AGGUAUUUCGACACCG	chr6:31239335-31239639(-)$1	304	8	24	12.5513
GGCAUCCGCCUUUCCC	chr8:57906013-57906363(-)$1	350	231	247	13.4296
CGGCGGGCGGAGGCGG	chr16:2802588-2802878(+)$1	290	240	256	12.3308
AACCCCAGCGCAGGUG	chr6:160492916-160493144(+)$1	228	174	190	13.3147
CUACCCAGGCAAGUGG	chr19:6686074-6686289(-)$1	215	147	163	13.2523
GGUAGCACCGUGUACC	chr6:43109569-43109847(+)$1	278	28	44	12.0536
GAAACACAGAUCUUUG	chr12:6619566-6619809(+)$1	243	121	137	13.4369
CAGUGUGAUCAGACUC	chr3:133475025-133475271(+)$1	246	23	39	13.4369
CAGCGUGGAGGAGCUG	chr6:167369764-167370029(-)$1	265	32	48	13.9561
GCGCGGAUGGAGGAGA	chr19:45412200-45412458(+)$1	258	52	68	12.5722
CACCACCCUCCAGGUG	chr1:979613-979852(+)$1	239	87	103	13.2523
UGAGAUUUUCCCCUCC	chr9:116997816-116998032(+)$1	216	125	141	13.4315
ACGGUAACAACUUCGU	chr9:116823733-116823969(-)$1	236	212	228	13.9561
GGCUGUCCAAGGAGCU	chr19:45411737-45412018(+)$1	281	144	160	13.2523
GCGCUGCCCCAUGUGC	chr16:2015161-2015395(+)$1	234	107	123	13.9561
UGGAUAUAUCUCUCCC	chr17:7480100-7480356(+)$1	256	208	224	13.4140
GUCUGAAAAUCUGGAC	chr17:74557636-74557850(+)$1	214	106	122	13.9561
CACCUCCCGGCUGGAU	chr1:230846039-230846274(-)$1	235	190	206	13.0729
AGUCGGGGUCCAGACC	chr8:27461704-27461930(-)$1	226	126	142	13.4780
cgccUUGAACUUGGAg	chr19:3360111-3360327(+)$1	216	125	141	12.7724
CCUCUCCUCACCGAGG	chr14:101200761-101201013(+)$1	252	208	224	13.2523
GGGCGGCGGGCGGCGA	chr16:21531535-21531823(-)$1	288	55	71	12.2990
GGCCGCGUGCGAGAGC	chr20:60889758-60889985(-)$1	227	83	99	11.8335
GGCUGUUCACCUGGCC	chr9:116999160-116999366(+)$1	206	39	55	13.9561
CUGGGCCUGGGACCAG	chr9:116999166-116999409(+)$1	243	3	19	13.9561
gaccauggcagcgggc	chr2:11484516-11484760(-)$1	244	65	81	13.0883
AAGUGCAGGAAAACUU	chr9:116840348-116840591(-)$1	243	190	206	13.9561
UCAGAGACAAAGCUGA	chr8:27463815-27464078(-)$1	263	61	77	13.9561
GGAGAGCCCGUCCUCC	chr21:9826121-9826349(+)$1	228	40	56	12.8478
CCACAGCCUGAGGUGG	chr17:80196513-80196750(+)$1	237	189	205	13.2523
AGGGCUGGUUUUCCCC	chr2:203142745-203143009(+)$1	264	187	203	13.4369
GGCAAACCUCUCUGCU	chr1:230845698-230845945(-)$1	247	209	225	13.9561
CAGGCCCCCCGUCCAG	chr8:145640036-145640325(-)$1	289	179	195	13.0100
CGCCUCGUGCUCGGAG	chr7:45928138-45928456(+)$1	318	247	263	12.3308
AGGCAAAGAAAGGCCU	chr17:74557092-74557333(+)$1	241	134	150	12.0536
ACGGAGCUGUGGCCGG	chr21:46888551-46888796(+)$1	245	226	242	11.6649

#DB
((((........))))	chr1:173835360-173835588(-)$1	1	168	184	12.8478
((((........))))	chr10:102112033-102112282(+)$1	1	28	44	13.9561
(.((........)).)	chr16:3767355-3767612(-)$1	1	94	110	12.7244
.(((........))).	chr8:11705147-11705433(-)$1	1	78	94	11.6649
((((........))))	chr17:76968289-76968551(-)$1	1	92	108	13.2523
((((........))))	chr17:74557650-74557886(+)$1	1	92	108	13.9561
((((........))))	chr21:46893716-46893959(+)$1	1	77	93	13.2523
((((........))))	chr5:109035342-109035586(-)$1	1	149	165	13.2523
((((........))))	chr19:6694523-6694745(-)$1	1	132	148	13.9561
((((........))))	chr10:95353498-95353742(-)$1	1	210	226	11.9873
((((........))))	chr9:116840313-116840548(-)$1	1	79	95	13.2523
(.((........))))	chr1:19468040-19468279(-)$1	1	170	186	12.6966
.(((........))))	chr1:19446597-19446849(-)$1	1	161	177	13.2440
.(((........))).	chr5:137896662-137896878(-)$1	1	3	19	11.6649
((((........))))	chr12:57556588-57556830(+)$1	1	54	70	13.9561
((((........))))	chr21:46899887-46900136(+)$1	1	213	229	13.9561
((((........))))	chr19:6714135-6714359(-)$1	1	157	173	13.9561
((((........))))	chr16:16414907-16415189(+)$1	1	259	275	13.9561
((((........))))	chr1:35657872-35658145(-)$1	1	160	176	13.9561
((((........))))	chr1:230839950-230840183(-)$1	1	97	113	13.9561
((((........))))	chr6:132271532-132271758(-)$1	1	143	159	13.9561
(.((........)).)	chr19:3360127-3360340(+)$1	1	109	125	12.7724
((((........))))	chr20:61449772-61450004(+)$1	1	78	94	12.0536
((((........))))	chr11:1778533-1778768(-)$1	1	179	195	13.9561
((((........))))	chr20:60911307-60911584(-)$1	1	198	214	11.9873
((.(........).))	chr20:17608143-17608393(-)$1	1	167	183	13.0551
((((........))))	chr17:79918551-79918888(-)$1	1	247	263	13.9561
((((........))))	chr8:17767353-17767605(-)$1	1	155	171	13.9561
(.((........)).)	chr7:45928256-45928520(+)$1	1	129	145	12.3308
((((........))))	chr6:144803243-144803495(+)$1	1	18	34	13.2523
((((........))))	chr1:173833910-173834142(-)$1	1	121	137	13.2523
((((........))))	chr19:13049847-13050072(+)$1	1	84	100	13.2523
((((........))))	chr9:128003183-128003426(-)$1	1	137	153	13.2523
((.(........).))	chr3:49160252-49160538(-)$1	1	112	128	12.3848
..((........))))	chr21:46897240-46897494(+)$1	1	44	60	12.3299
.(((........))).	chr19:24187192-24187410(-)$1	1	184	200	12.2439
((((........))))	chr19:893455-893689(+)$1	1	148	164	13.9561
.(((........)))(	chr6:31239335-31239639(-)$1	1	8	24	12.5513
((.(........).))	chr8:57906013-57906363(-)$1	1	231	247	13.4296
(.((........)).)	chr16:2802588-2802878(+)$1	1	240	256	12.3308
.(((........))).	chr6:160492916-160493144(+)$1	1	174	190	13.3147
((((........))))	chr19:6686074-6686289(-)$1	1	147	163	13.2523
((((........))))	chr6:43109569-43109847(+)$1	1	28	44	12.0536
.(((........))).	chr12:6619566-6619809(+)$1	1	121	137	13.4369
.(((........))).	chr3:133475025-133475271(+)$1	1	23	39	13.4369
((((........))))	chr6:167369764-167370029(-)$1	1	32	48	13.9561
((.(........).).	chr19:45412200-45412458(+)$1	1	52	68	12.5722
((((........))))	chr1:979613-979852(+)$1	1	87	103	13.2523
.(((........))).	chr9:116997816-116998032(+)$1	1	125	141	13.4315
((((........))))	chr9:116823733-116823969(-)$1	1	212	228	13.9561
((((........))))	chr19:45411737-45412018(+)$1	1	144	160	13.2523
((((........))))	chr16:2015161-2015395(+)$1	1	107	123	13.9561
.(((........))).	chr17:7480100-7480356(+)$1	1	208	224	13.4140
((((........))))	chr17:74557636-74557850(+)$1	1	106	122	13.9561
((((........)).)	chr1:230846039-230846274(-)$1	1	190	206	13.0729
.(((........))))	chr8:27461704-27461930(-)$1	1	126	142	13.4780
(.((........)).)	chr19:3360111-3360327(+)$1	1	125	141	12.7724
((((........))))	chr14:101200761-101201013(+)$1	1	208	224	13.2523
..((........))..	chr16:21531535-21531823(-)$1	1	55	71	12.2990
((((........).))	chr20:60889758-60889985(-)$1	1	83	99	11.8335
((((........))))	chr9:116999160-116999366(+)$1	1	39	55	13.9561
((((........))))	chr9:116999166-116999409(+)$1	1	3	19	13.9561
..((........))))	chr2:11484516-11484760(-)$1	1	65	81	13.0883
((((........))))	chr9:116840348-116840591(-)$1	1	190	206	13.9561
((((........))))	chr8:27463815-27464078(-)$1	1	61	77	13.9561
((((........))))	chr21:9826121-9826349(+)$1	1	40	56	12.8478
((((........))))	chr17:80196513-80196750(+)$1	1	189	205	13.2523
.(((........))).	chr2:203142745-203143009(+)$1	1	187	203	13.4369
((((........))))	chr1:230845698-230845945(-)$1	1	209	225	13.9561
(.((........)).)	chr8:145640036-145640325(-)$1	1	179	195	13.0100
(.((........)).)	chr7:45928138-45928456(+)$1	1	247	263	12.3308
((((........))))	chr17:74557092-74557333(+)$1	1	134	150	12.0536
.(((........))).	chr21:46888551-46888796(+)$1	1	226	242	11.6649

#PSSM
d : 0.35	e : 0.17	[ : 0.09	b : 0.06	: : 0.05	g : 0.04	h : 0.04	c : 0.04	f : 0.04	! : 0.02	a : 0.01	" : 0.01	% : 0.01	# : 0.01	
d : 0.34	c : 0.19	e : 0.17	[ : 0.10	h : 0.04	f : 0.04	g : 0.02	! : 0.02	" : 0.01	a : 0.01	b : 0.01	
d : 0.31	b : 0.17	c : 0.17	e : 0.17	[ : 0.05	f : 0.04	g : 0.02	h : 0.02	
d : 0.31	c : 0.17	e : 0.17	b : 0.16	a : 0.06	f : 0.04	g : 0.02	h : 0.02	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.31	c : 0.17	e : 0.17	b : 0.16	a : 0.06	f : 0.04	g : 0.02	h : 0.02	
d : 0.31	c : 0.17	e : 0.17	b : 0.16	] : 0.06	f : 0.04	g : 0.02	h : 0.02	
d : 0.34	c : 0.19	e : 0.17	] : 0.10	f : 0.05	g : 0.04	h : 0.04	a : 0.01	2 : 0.01	b : 0.01	
d : 0.36	e : 0.17	b : 0.06	c : 0.06	f : 0.05	] : 0.05	g : 0.04	: : 0.04	h : 0.04	4 : 0.02	a : 0.01	6 : 0.01	3 : 0.01	2 : 0.01	

#score	961.1205592636395
#seq	73
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_CDS_m1_run2.txt

#BEAR
fff[eeeee^^^^^^^^^^^^^^^^^^^^^^eeeee	chr7:137592906-137593218(-)$1	312	100	136	38.8016
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr19:45648996-45649280(+)$1	284	107	143	47.1400
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr1:27736301-27736545(-)$1	244	63	99	47.6076
[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:65105548-65105828(-)$1	280	166	202	44.2686
ee[bb^^^^^^^^^^^^^^^^^^^^^^^bb]eeeee	chr12:6438944-6439248(-)$1	304	239	275	39.4588
:ccc[bb^^^^^^^^^^^^^^^^^^^^^bb333ccc	chr17:42475076-42475363(-)$1	287	220	256	37.0592
#eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr6:89790576-89790826(+)$1	250	189	225	43.5606
::::eeeee^^^^^^^^^^^^^^^^^^^^^^eeeee	chr1:27057718-27058037(+)$1	319	207	243	36.9714
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr17:36891334-36891582(-)$1	248	162	198	44.2783
hhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr12:7046094-7046327(+)$1	233	79	115	41.7396
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr2:101883058-101883355(+)$1	297	11	47	44.1896
!!ffffff^^^^^^^^^^^^^^^^^^^^^^^fffff	chr17:27239977-27240248(-)$1	271	107	143	39.4450
gggga^^^^^^^^^^^^^^^^^^^^^^^^^^^a]gg	chr4:83763288-83763540(-)$1	252	154	190	43.6415
e^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr21:33060516-33060797(-)$1	281	91	127	47.0230
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr14:101195343-101195593(+)$1	250	187	223	46.6325
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr12:57115104-57115396(-)$1	292	107	143	46.9556
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr15:75499286-75499629(+)$1	343	122	158	46.4078
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr12:7045556-7045779(+)$1	223	147	183	47.6076
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr11:64897729-64897951(-)$1	222	75	111	46.6325
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr12:49434175-49434456(-)$1	281	200	236	44.2783
dd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chrX:110951324-110951581(+)$1	257	122	158	45.8197
ccccc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc22	chr20:60882558-60882843(+)$1	285	115	151	43.4265
))eeeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr2:204305641-204305864(-)$1	223	67	103	42.1374
[bb[eeeee^^^^^^^^^^^^^^^^^^^^^^eeeee	chr2:204305224-204305473(-)$1	249	162	198	39.0733
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd3	chr2:204304990-204305235(-)$1	245	142	178	47.0741
+++eeeee^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:12294-12505(+)$1	211	19	55	41.1533
c^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]d	chr16:28905660-28905932(+)$1	272	48	84	46.4204
:eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr12:122252175-122252455(+)$1	280	11	47	42.8659
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^iiiii	chr5:31526660-31526910(-)$1	250	210	246	46.8713
dd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr16:30748683-30748937(+)$1	254	112	148	45.8614
dddd[bb^^^^^^^^^^^^^^^^^^^^^^^bb]ddd	chr11:64138845-64139121(+)$1	276	203	239	39.2467
+++++eeeee^^^^^^^^^^^^^^^^^^^^^eeeee	chr1:33236865-33237083(+)$1	218	115	151	38.1624
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chr11:68029602-68029873(-)$1	271	219	255	47.0983
::eeeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr12:57919866-57920127(+)$1	261	59	95	41.2609
eeeea^^^^^^^^^^^^^^^^^^^^^^^^^^a]eee	chr16:2569580-2569878(+)$1	298	131	167	44.3190
##ccc^^^^^^^^^^^^^^^^^^^^ccc4444dddd	chr8:144522216-144522530(-)$1	314	137	173	37.6836
GGeeeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr17:6941595-6941912(+)$1	317	140	176	41.5209
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr3:47452117-47452363(+)$1	246	141	177	46.9556
ddddd^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chr12:49434157-49434375(-)$1	218	119	155	43.3771
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr17:56051866-56052130(-)$1	264	174	210	47.6076
:ffffff^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr13:39586853-39587142(-)$1	289	25	61	40.0178
::ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc:	chrX:129147612-129147909(+)$1	297	226	262	42.0125
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr12:100592875-100593180(-)$1	305	128	164	46.9389
cc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]c	chr17:65941633-65941914(+)$1	281	24	60	45.9044
::eeeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr12:57919843-57920066(+)$1	223	82	118	41.2609
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]cc	chr20:36147377-36147660(-)$1	283	114	150	46.3022
::ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc:	chr10:77158789-77159027(-)$1	238	94	130	42.0125
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr17:7417079-7417322(+)$1	243	90	126	46.6325
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd3	chr3:47894293-47894542(-)$1	249	79	115	47.0741
d^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chr6:44117501-44117770(+)$1	269	93	129	46.4826
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^cccee	chr3:183960572-183960844(-)$1	272	103	139	45.0273
dd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr19:7936841-7937114(-)$1	273	155	191	45.8614
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr7:5352442-5352747(-)$1	305	214	250	46.0371
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr14:105173882-105174184(+)$1	302	37	73	46.9389
eeeee[a^^^^^^^^^^^^^^^^^^^^^^a]eeeee	chr19:7712546-7712856(+)$1	310	19	55	40.2496
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb4	chr19:35759901-35760165(+)$1	264	31	67	46.2504
ee:dddd^^^^^^^^^^^^^^^^^^^^^^^^ddddc	chr19:40487097-40487370(+)$1	273	107	143	40.4950
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^=====	chr17:80039745-80039987(-)$1	242	177	213	46.9800
:ccc[bb^^^^^^^^^^^^^^^^^^^^^bb333ccc	chr17:42475050-42475276(-)$1	226	133	169	37.0592
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr15:96880590-96880841(+)$1	251	119	155	46.6325
###dddd^^^^^^^^^^^^^^^^^^^^^^^^dddd2	chr19:56125150-56125473(+)$1	323	162	198	41.7080
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]c	chr16:30976965-30977263(+)$1	298	110	146	46.9621
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^cccdd	chr16:28847934-28848168(+)$1	234	10	46	45.3694

#otherMatches

#Seq PSSM
CAGCCUGAGUCCCAACCCACGCCUGCACCCCUUCAG	chr7:137592906-137593218(-)$1	312	100	136	38.8016
ccccACCCGCCUCACCUUCCCUACCACCAGCCGGGG	chr19:45648996-45649280(+)$1	284	107	143	47.1400
CACCACCCUCACCCCCAUCUUUCCCACCUCACCCUG	chr1:27736301-27736545(-)$1	244	63	99	47.6076
UGCAAUCCCUAAUCGCCACUUUCAUCCCCUUCCCCA	chr17:65105548-65105828(-)$1	280	166	202	44.2686
CCGACCCCAUCCCCAACCCCCUUCAGAAGUGGGAGG	chr12:6438944-6439248(-)$1	304	239	275	39.4588
CGCUAGCCAUCCCAUCCACAUCAUUCCCGCCUCAGC	chr17:42475076-42475363(-)$1	287	220	256	37.0592
GCCCCCGACCCUCUUCCUCCCUCAUUUCCUAGGGGG	chr6:89790576-89790826(+)$1	250	189	225	43.5606
CCCAGAGCCAGCCCCCCUACUCACAGCCACAGGCUC	chr1:27057718-27058037(+)$1	319	207	243	36.9714
CUGGGCCCUUUUUUCCACCUCUUCUACUUUCCCCAG	chr17:36891334-36891582(-)$1	248	162	198	44.2783
UCCUACCCAUGUUCACACCCCUCCCCUUCCCAGGGC	chr12:7046094-7046327(+)$1	233	79	115	41.7396
GGGAAAAAAAAUUGACUCAACACCCUUUCUCUCUCC	chr2:101883058-101883355(+)$1	297	11	47	44.1896
CUGACAAGACACCUACACCUUCCCACUACCCCUUGU	chr17:27239977-27240248(-)$1	271	107	143	39.4450
GGAGCUCCACCAUCAUCUUCAGCUUAUGCACUGCCU	chr4:83763288-83763540(-)$1	252	154	190	43.6415
GAACCAGUAUCACCCAUACCUAAACCAUUACCUGUG	chr21:33060516-33060797(-)$1	281	91	127	47.0230
uauucuaaagaucuguuuauaaauuuccugugggua	chr14:101195343-101195593(+)$1	250	187	223	46.6325
UCUCCUCCCCCUCCCCCUUUCUUUAUCUCCUUUUGC	chr12:57115104-57115396(-)$1	292	107	143	46.9556
GGACGCUUACCCCUACCCCUCUGCCCCUCUCCCAGC	chr15:75499286-75499629(+)$1	343	122	158	46.4078
CCAAGUAUACUCAGCCUUCUCUCCCAUCCCAGGCUG	chr12:7045556-7045779(+)$1	223	147	183	47.6076
CCUUACCUCCGUCUUCUCUCUGCAGUCCCCCAGGGC	chr11:64897729-64897951(-)$1	222	75	111	46.6325
GAAGCUUUUUGCCCAUCACCCGUUACCCCUCGCUUC	chr12:49434175-49434456(-)$1	281	200	236	44.2783
UUUUCCUCUCCCUCUUACCCCCACCCUGUACAAAAU	chrX:110951324-110951581(+)$1	257	122	158	45.8197
GUCACCCCGUCAUCCACCACCUCUUCCACCCGUGCC	chr20:60882558-60882843(+)$1	285	115	151	43.4265
AAUGGAGUUGUUccaccacccccucccccuccucca	chr2:204305641-204305864(-)$1	223	67	103	42.1374
CAGUUUCCACCCCCUCCAACUCCCCCUGCCAUGGAA	chr2:204305224-204305473(-)$1	249	162	198	39.0733
accaccuccacccacagcuucuccuaccccUGACAA	chr2:204304990-204305235(-)$1	245	142	178	47.0741
UUGGUGCAACUCCAAAUAAAAGUAAUAACCAUGCAC	chrM:12294-12505(+)$1	211	19	55	41.1533
CUCUCCCCACUGUCCUUCCUUACCCUCUGCUGCCUG	chr16:28905660-28905932(+)$1	272	48	84	46.4204
cgcugccccccccaccaccaccacccccaccgcagc	chr12:122252175-122252455(+)$1	280	11	47	42.8659
CCUCCUUGUUUUCCUCCCAUGCCACCACCAAUGCCU	chr5:31526660-31526910(-)$1	250	210	246	46.8713
GUCCAUAUCUUGccuucuccucccccuccuucacag	chr16:30748683-30748937(+)$1	254	112	148	45.8614
GGGACUGUCCUUUCCUCUCCUACCCCACCCCACUCC	chr11:64138845-64139121(+)$1	276	203	239	39.2467
CCCCAUCUUAUCAUCCACCCCCACCACCCACUAAGA	chr1:33236865-33237083(+)$1	218	115	151	38.1624
CAAAUAAAUCCACACCCAUGCCCUCAAACACAACCC	chr11:68029602-68029873(-)$1	271	219	255	47.0983
CUGCUCCUGUCCCCCAACCCUUUUCUCUCCCGGAGC	chr12:57919866-57920127(+)$1	261	59	95	41.2609
GUCUCAUCGUCGCCCUCAUCCUCUCCACAAAGUAGA	chr16:2569580-2569878(+)$1	298	131	167	44.3190
ccuccucauccccuccCGCUUCCUUGGACCACGAGG	chr8:144522216-144522530(-)$1	314	137	173	37.6836
CAGGGCCCAACUCACCUCUCUCCUCCAUCAUGGCCC	chr17:6941595-6941912(+)$1	317	140	176	41.5209
CUCCUACCCCCACAAUCCCCCUACCCCUAUGCCCCU	chr3:47452117-47452363(+)$1	246	141	177	46.9556
GAAGCUUUUUGCCCAUCACCCGUUACCCCUCGCUUC	chr12:49434157-49434375(-)$1	218	119	155	43.3771
AUCACAUCUCCAAUGAAUCUACCCACACCUAUGACA	chr17:56051866-56052130(-)$1	264	174	210	47.6076
UCAGCAGCACCUUUCCCCCUCAACCUGUCCACUGCU	chr13:39586853-39587142(-)$1	289	25	61	40.0178
ccggcccaccuucuacccccacccucauccccgccu	chrX:129147612-129147909(+)$1	297	226	262	42.0125
UCCCUCUGCUCCUUCCCUCUGACCCCUCUCUAGUGU	chr12:100592875-100593180(-)$1	305	128	164	46.9389
gccccagccccaaacccagccccaguccccagcUCA	chr17:65941633-65941914(+)$1	281	24	60	45.9044
CUGCUCCUGUCCCCCAACCCUUUUCUCUCCCGGAGC	chr12:57919843-57920066(+)$1	223	82	118	41.2609
CUCCUCAUCCCCAAGCCCCUCAACCCCGCCCUGUGG	chr20:36147377-36147660(-)$1	283	114	150	46.3022
UAUGCUCCCUAACGACCCACUCCCCCACAUCUGCAA	chr10:77158789-77159027(-)$1	238	94	130	42.0125
ACCAGUCCCAAAUAUUCACCCACCUCUCCCAAGUAC	chr17:7417079-7417322(+)$1	243	90	126	46.6325
UCCCCUCUCCCUUCCCUCCUCCCAUGUCACUGCAGA	chr3:47894293-47894542(-)$1	249	79	115	47.0741
GAACCCCAUCAUCACCCAGUUCUUCCCCACCCUGCU	chr6:44117501-44117770(+)$1	269	93	129	46.4826
CGUUUCUACCCUCUUCACCUCCAACUUCAUUGGCAU	chr3:183960572-183960844(-)$1	272	103	139	45.0273
GCCACGCCCCCCUCGCAAGUUCCACCCACACAGCUG	chr19:7936841-7937114(-)$1	273	155	191	45.8614
cuccucuuccuccucuucuuccuccACCACAGACGA	chr7:5352442-5352747(-)$1	305	214	250	46.0371
CCCCUCCCCCACCACCCCCCCUGCCCAGUGUGGGGG	chr14:105173882-105174184(+)$1	302	37	73	46.9389
GGCAGCGCCCCCCAACAUCUUCCCCAAACCUCUGCC	chr19:7712546-7712856(+)$1	310	19	55	40.2496
cccuccccucccucccuccccuccccuccccucccc	chr19:35759901-35760165(+)$1	264	31	67	46.2504
ACAAGUGACCCUUCCCUUCCCUCCACCACACCACUC	chr19:40487097-40487370(+)$1	273	107	143	40.4950
ccccgcagcccugcccaccccacccucucccagugg	chr17:80039745-80039987(-)$1	242	177	213	46.9800
CGCUAGCCAUCCCAUCCACAUCAUUCCCGCCUCAGC	chr17:42475050-42475276(-)$1	226	133	169	37.0592
UUCCCUCCGCACCGUCUCCUCCUCAGUCAUAGAGCA	chr15:96880590-96880841(+)$1	251	119	155	46.6325
caucuucguccucuuccucuuccCAAGCCAAGAAGC	chr19:56125150-56125473(+)$1	323	162	198	41.7080
AUCCUCCCCACCAACCUGCCUACCUCCUCCCACCCA	chr16:30976965-30977263(+)$1	298	110	146	46.9621
UCCUUCCCAGACACACCCCCACGCCCCCACUGGACG	chr16:28847934-28848168(+)$1	234	10	46	45.3694

#DB
(((.(((((......................)))))	chr7:137592906-137593218(-)$1	1	100	136	38.8016
................................))))	chr19:45648996-45649280(+)$1	1	107	143	47.1400
...............................)))))	chr1:27736301-27736545(-)$1	1	63	99	47.6076
.((.................................	chr17:65105548-65105828(-)$1	1	166	202	44.2686
((.((.......................)).)))))	chr12:6438944-6439248(-)$1	1	239	275	39.4588
.(((.((.....................))...)))	chr17:42475076-42475363(-)$1	1	220	256	37.0592
.(((((.........................)))))	chr6:89790576-89790826(+)$1	1	189	225	43.5606
....(((((......................)))))	chr1:27057718-27058037(+)$1	1	207	243	36.9714
(((((..........................)))))	chr17:36891334-36891582(-)$1	1	162	198	44.2783
((((...........................)))))	chr12:7046094-7046327(+)$1	1	79	115	41.7396
((((.............................)))	chr2:101883058-101883355(+)$1	1	11	47	44.1896
..((((((.......................)))))	chr17:27239977-27240248(-)$1	1	107	143	39.4450
(((((...........................).))	chr4:83763288-83763540(-)$1	1	154	190	43.6415
(..............................)))))	chr21:33060516-33060797(-)$1	1	91	127	47.0230
...............................)))))	chr14:101195343-101195593(+)$1	1	187	223	46.6325
.................................)))	chr12:57115104-57115396(-)$1	1	107	143	46.9556
((.............................)))))	chr15:75499286-75499629(+)$1	1	122	158	46.4078
...............................)))))	chr12:7045556-7045779(+)$1	1	147	183	47.6076
...............................)))))	chr11:64897729-64897951(-)$1	1	75	111	46.6325
(((((..........................)))))	chr12:49434175-49434456(-)$1	1	200	236	44.2783
((.............................)))).	chrX:110951324-110951581(+)$1	1	122	158	45.8197
(((((..........................)))..	chr20:60882558-60882843(+)$1	1	115	151	43.4265
..(((((........................)))))	chr2:204305641-204305864(-)$1	1	67	103	42.1374
.((.(((((......................)))))	chr2:204305224-204305473(-)$1	1	162	198	39.0733
...............................)))).	chr2:204304990-204305235(-)$1	1	142	178	47.0741
...(((((.......................)))))	chrM:12294-12505(+)$1	1	19	55	41.1533
(..............................))).)	chr16:28905660-28905932(+)$1	1	48	84	46.4204
.(((((.........................)))))	chr12:122252175-122252455(+)$1	1	11	47	42.8659
...............................)))))	chr5:31526660-31526910(-)$1	1	210	246	46.8713
((..............................))))	chr16:30748683-30748937(+)$1	1	112	148	45.8614
((((.((.......................)).)))	chr11:64138845-64139121(+)$1	1	203	239	39.2467
.....(((((.....................)))))	chr1:33236865-33237083(+)$1	1	115	151	38.1624
...............................)))).	chr11:68029602-68029873(-)$1	1	219	255	47.0983
..(((((........................)))))	chr12:57919866-57920127(+)$1	1	59	95	41.2609
(((((..........................).)))	chr16:2569580-2569878(+)$1	1	131	167	44.3190
..(((....................)))....))))	chr8:144522216-144522530(-)$1	1	137	173	37.6836
(((((((........................)))))	chr17:6941595-6941912(+)$1	1	140	176	41.5209
.................................)))	chr3:47452117-47452363(+)$1	1	141	177	46.9556
(((((..........................)))).	chr12:49434157-49434375(-)$1	1	119	155	43.3771
...............................)))))	chr17:56051866-56052130(-)$1	1	174	210	47.6076
.((((((........................)))))	chr13:39586853-39587142(-)$1	1	25	61	40.0178
..(((...........................))).	chrX:129147612-129147909(+)$1	1	226	262	42.0125
...............................)))))	chr12:100592875-100593180(-)$1	1	128	164	46.9389
((.............................))).)	chr17:65941633-65941914(+)$1	1	24	60	45.9044
..(((((........................)))))	chr12:57919843-57920066(+)$1	1	82	118	41.2609
...............................)).))	chr20:36147377-36147660(-)$1	1	114	150	46.3022
..(((...........................))).	chr10:77158789-77159027(-)$1	1	94	130	42.0125
...............................)))))	chr17:7417079-7417322(+)$1	1	90	126	46.6325
...............................)))).	chr3:47894293-47894542(-)$1	1	79	115	47.0741
(..............................)))).	chr6:44117501-44117770(+)$1	1	93	129	46.4826
.(((...........................)))))	chr3:183960572-183960844(-)$1	1	103	139	45.0273
((..............................))))	chr19:7936841-7937114(-)$1	1	155	191	45.8614
...............................)))))	chr7:5352442-5352747(-)$1	1	214	250	46.0371
...............................)))))	chr14:105173882-105174184(+)$1	1	37	73	46.9389
(((((.(......................).)))))	chr19:7712546-7712856(+)$1	1	19	55	40.2496
.................................)).	chr19:35759901-35760165(+)$1	1	31	67	46.2504
)).((((........................))))(	chr19:40487097-40487370(+)$1	1	107	143	40.4950
...............................)))))	chr17:80039745-80039987(-)$1	1	177	213	46.9800
.(((.((.....................))...)))	chr17:42475050-42475276(-)$1	1	133	169	37.0592
...............................)))))	chr15:96880590-96880841(+)$1	1	119	155	46.6325
...((((........................)))).	chr19:56125150-56125473(+)$1	1	162	198	41.7080
...............................))).)	chr16:30976965-30977263(+)$1	1	110	146	46.9621
(((............................)))))	chr16:28847934-28848168(+)$1	1	10	46	45.3694

#PSSM
^ : 0.33	: : 0.14	e : 0.12	d : 0.11	c : 0.06	[ : 0.04	# : 0.04	+ : 0.03	f : 0.01	h : 0.01	! : 0.01	g : 0.01	) : 0.01	G : 0.01	
^ : 0.38	e : 0.14	c : 0.09	d : 0.09	: : 0.07	f : 0.03	b : 0.03	+ : 0.03	# : 0.03	h : 0.01	! : 0.01	g : 0.01	) : 0.01	G : 0.01	
^ : 0.46	e : 0.15	c : 0.12	f : 0.04	d : 0.04	b : 0.03	: : 0.03	+ : 0.03	[ : 0.01	h : 0.01	g : 0.01	# : 0.01	
^ : 0.49	e : 0.17	c : 0.11	d : 0.07	[ : 0.03	f : 0.03	b : 0.01	: : 0.01	h : 0.01	g : 0.01	+ : 0.01	
^ : 0.53	e : 0.20	c : 0.06	[ : 0.04	d : 0.04	f : 0.03	a : 0.03	b : 0.01	+ : 0.01	
^ : 0.69	e : 0.17	b : 0.04	f : 0.03	d : 0.03	[ : 0.01	
^ : 0.73	e : 0.14	b : 0.04	f : 0.03	d : 0.03	a : 0.01	
^ : 0.90	e : 0.07	f : 0.01	
^ : 0.93	e : 0.06	
^ : 0.98	e : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.98	c : 0.01	
^ : 0.98	c : 0.01	
^ : 0.98	c : 0.01	
^ : 0.93	b : 0.04	4 : 0.01	
^ : 0.92	b : 0.04	4 : 0.01	a : 0.01	
^ : 0.90	] : 0.03	3 : 0.03	b : 0.01	4 : 0.01	
e : 0.31	^ : 0.17	d : 0.12	f : 0.09	c : 0.09	3 : 0.03	h : 0.03	b : 0.03	g : 0.03	i : 0.01	a : 0.01	4 : 0.01	= : 0.01	
e : 0.31	d : 0.19	c : 0.12	f : 0.09	^ : 0.07	3 : 0.03	h : 0.03	] : 0.03	g : 0.03	a : 0.01	i : 0.01	b : 0.01	= : 0.01	
e : 0.33	d : 0.22	c : 0.19	f : 0.09	h : 0.03	] : 0.03	g : 0.03	^ : 0.01	i : 0.01	b : 0.01	= : 0.01	
e : 0.34	d : 0.23	c : 0.11	f : 0.09	g : 0.04	] : 0.04	h : 0.03	^ : 0.01	2 : 0.01	i : 0.01	b : 0.01	= : 0.01	
e : 0.34	d : 0.12	c : 0.12	f : 0.09	] : 0.06	g : 0.04	h : 0.03	2 : 0.03	3 : 0.03	: : 0.03	^ : 0.01	i : 0.01	4 : 0.01	= : 0.01	

#score	2761.8469817589403
#seq	63
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_transcript_m2_run1.txt

#BEAR
f!!ddddqqqqqqqqdddd	chr2:127438110-127438364(+)$1	254	76	95	14.1891
e:eeeeeqqqqqqqqeeee	chr8:145000147-145000427(-)$1	280	149	168	13.1274
cc"""bbqqqqqqqqbb33	chr22:49826518-49826771(-)$1	253	134	153	13.9417
f"""cccqqqqqqqqccc3	chr1:2170766-2171033(+)$1	267	77	96	15.1873
gggggggqqqqqqqqgggg	chr8:94745984-94746207(-)$1	223	33	52	14.1296
dddddddqqqqqqqqdddd	chr1:16256852-16257091(+)$1	239	132	151	13.8311
===[cccqqqqqqqqccc]	chr8:58118233-58118525(+)$1	292	237	256	15.4225
!ccccccqqqqqqqqccc]	chr22:49942354-49942604(-)$1	250	189	208	15.0797
ddd[cccqqqqqqqqccc]	chr19:5077952-5078239(+)$1	287	181	200	15.1675
eeeddddqqqqqqqqdddd	chr17:80534319-80534608(+)$1	289	133	152	14.0773
fffff[aqqqqqqqqa]ff	chr19:1408464-1408710(+)$1	246	196	215	13.6333
###ddddqqqqqqqqdddd	chr11:62298859-62299092(-)$1	233	71	90	14.0141
!ffffffqqqqqqqqffff	chr16:89042872-89043115(-)$1	243	94	113	13.4212
!!a!!bbqqqqqqqqbb22	chr1:2214149-2214436(+)$1	287	196	215	13.9380
dd[ddddqqqqqqqqdddd	chr19:50156283-50156535(+)$1	252	125	144	14.0686
dddd[bbqqqqqqqqbb]d	chr5:71492199-71492446(+)$1	247	0	19	13.3228
!!eeeeeqqqqqqqqeeee	chr8:145000399-145000673(-)$1	274	212	231	14.2669
dd"""bbqqqqqqqqbb22	chr1:2214280-2214540(+)$1	260	55	74	13.5573
gggggggqqqqqqqqgggg	chr7:1158874-1159147(-)$1	273	181	200	14.1296
e[a[cccqqqqqqqqccc]	chr16:81551554-81551827(+)$1	273	68	87	15.4916
eee[cccqqqqqqqqccc]	chr22:49863975-49864221(-)$1	246	147	166	15.4138
f[a[cccqqqqqqqqccc]	chr19:5078206-5078463(+)$1	257	148	167	15.3588
eeeecccqqqqqqqqccc2	chr16:88561488-88561731(+)$1	243	1	20	14.9690
##a[cccqqqqqqqqccc]	chr9:139126558-139126811(-)$1	253	189	208	15.3069
dd[ddddqqqqqqqqdddd	chr19:893455-893689(+)$1	234	145	164	14.0686
ffff!!aqqqqqqqqa22f	chr1:246141582-246141813(-)$1	231	31	50	13.5967
e:eeeeeqqqqqqqqeeee	chr19:5079977-5080215(+)$1	238	199	218	13.1274
gggggggqqqqqqqqgggg	chr16:89030874-89031108(-)$1	234	10	29	14.1296
"""ddddqqqqqqqqdddd	chr7:1879388-1879682(-)$1	294	132	151	14.1317
!!bb!!aqqqqqqqqa22b	chr12:133128995-133129250(+)$1	255	209	228	13.2062
eeeeebbqqqqqqqqbb]e	chr19:11170434-11170662(+)$1	228	111	130	13.6512
ddd[cccqqqqqqqqccc]	chr7:1887361-1887627(-)$1	266	172	191	15.1675
[ffffffqqqqqqqqffff	chr7:2007488-2007747(-)$1	259	56	75	13.3938
:dddd[aqqqqqqqqa]dd	chr11:71725591-71725842(-)$1	251	120	139	13.0037
ee"""bbqqqqqqqqbbee	chr16:89347358-89347609(-)$1	251	32	51	13.8108
d"""cccqqqqqqqqccc2	chr22:20837198-20837431(-)$1	233	87	106	15.1164
dd!!cccqqqqqqqqccc2	chr22:49941435-49941707(-)$1	272	87	106	15.1664
ca[ddddqqqqqqqqdddd	chr16:89027594-89027837(-)$1	243	145	164	14.0876
hhh[cccqqqqqqqqccch	chr8:94753045-94753286(-)$1	241	70	89	14.3156
gggggggqqqqqqqqgggg	chr18:75689953-75690210(-)$1	257	28	47	14.1296
fff[cccqqqqqqqqccc]	chr16:1368456-1368684(+)$1	228	163	182	15.0914
dddd[bbqqqqqqqqbb]d	chr17:41466041-41466361(-)$1	320	280	299	13.3228
cc!!cccqqqqqqqqccc]	chr9:139128057-139128298(-)$1	241	53	72	15.4276
cceeeeeqqqqqqqqeeee	chr16:89029009-89029271(-)$1	262	67	86	14.0141
eee[cccqqqqqqqqccc]	chr5:71493618-71493874(+)$1	256	156	175	15.4138
e[eeeeeqqqqqqqqeeee	chr16:89346585-89346860(-)$1	275	124	143	14.1831
:ccccccqqqqqqqqccc]	chr19:37549468-37549687(+)$1	219	8	27	13.9988
ccc[cccqqqqqqqqccc]	chr22:48183760-48184019(+)$1	259	19	38	15.2617
a[eeeeeqqqqqqqqeeee	chr16:31198484-31198728(+)$1	244	45	64	14.0908
cceeeeeqqqqqqqqeeee	chr22:50014320-50014570(-)$1	250	198	217	14.0141
!bb"""aqqqqqqqqa333	chr16:87735153-87735409(-)$1	256	11	30	14.0891
ffff!!aqqqqqqqqa22f	chr2:3322388-3322621(-)$1	233	52	71	13.5967
eeeee[aqqqqqqqqa]ee	chr7:1153166-1153409(-)$1	243	114	133	14.3174
ff[ddddqqqqqqqqdddd	chr7:1887656-1887908(-)$1	252	43	62	13.9637
ddd[cccqqqqqqqqcccd	chr22:49938364-49938605(-)$1	241	148	167	14.9062
dd[acccqqqqqqqqccc]	chr7:23455228-23455470(-)$1	242	74	93	15.1213
$$$$cccqqqqqqqqccc4	chr16:89031986-89032254(-)$1	268	222	241	14.2188
eeeeeeeqqqqqqqqeeee	chr22:20050697-20050991(+)$1	294	249	268	14.0653
[ffffffqqqqqqqqffff	chr16:89008449-89008699(-)$1	250	100	119	13.3938
ddeeeeeqqqqqqqqeeee	chr16:1367239-1367548(+)$1	309	156	175	13.9694
iii[cccqqqqqqqqccc2	chr1:2213897-2214179(+)$1	282	147	166	15.1138
[ffffffqqqqqqqqffff	chr15:29233374-29233626(+)$1	252	192	211	13.3938
eeee!!aqqqqqqqqa22e	chr7:23454363-23454614(-)$1	251	195	214	14.1353
ggeeeeeqqqqqqqqeeee	chr22:49970313-49970567(-)$1	254	77	96	14.0435
eeeddddqqqqqqqqdddd	chr11:71724803-71725026(-)$1	223	137	156	14.0773
eee[cccqqqqqqqqccce	chr16:89038655-89038905(-)$1	250	182	201	15.2225
qqbbcccqqqqqqqqcccc	chr16:89032099-89032353(-)$1	254	164	183	12.7618
e!!ddddqqqqqqqqdddd	chr17:20801640-20801922(+)$1	282	197	216	14.3219

#otherMatches

#Seq PSSM
UCAUUUCCACCUGCAGAAG	chr2:127438110-127438364(+)$1	254	76	95	14.1891
GCCUGGGCCUCCUUCCCCA	chr8:145000147-145000427(-)$1	280	149	168	13.1274
GCAAACCUGGAAGAUGGAU	chr22:49826518-49826771(-)$1	253	134	153	13.9417
GGCUCGAUGUCUUCCUUGU	chr1:2170766-2171033(+)$1	267	77	96	15.1873
CUCCUGAUGAGGACUUCAG	chr8:94745984-94746207(-)$1	223	33	52	14.1296
AGCGAGAUGAAAGACUCUC	chr1:16256852-16257091(+)$1	239	132	151	13.8311
GUGagcggcgacagacgcg	chr8:58118233-58118525(+)$1	292	237	256	15.4225
CCUGCAGAAACUCACCUGC	chr22:49942354-49942604(-)$1	250	189	208	15.0797
GGUCCAGCUCAGCAACUGC	chr19:5077952-5078239(+)$1	287	181	200	15.1675
CAGAAUGUUCCAAUUCAUU	chr17:80534319-80534608(+)$1	289	133	152	14.0773
GGAAGGGAGAGUCAGCGCU	chr19:1408464-1408710(+)$1	246	196	215	13.6333
AGGUCCUAAAGUAAAGGGA	chr11:62298859-62299092(-)$1	233	71	90	14.0141
GGCAGCCGGUGCCGGGGCU	chr16:89042872-89043115(-)$1	243	94	113	13.4212
CCCUAAGCUGAGCCACUGU	chr1:2214149-2214436(+)$1	287	196	215	13.9380
CAAGACCAGGAAAAAGGUC	chr19:50156283-50156535(+)$1	252	125	144	14.0686
GGCCAUUGAGAAAGGAGAG	chr5:71492199-71492446(+)$1	247	0	19	13.3228
ACCCAGGCUUCCCACCCUG	chr8:145000399-145000673(-)$1	274	212	231	14.2669
UCCUCCUGUGCCCUAAGCU	chr1:2214280-2214540(+)$1	260	55	74	13.5573
auacaggugugagccccug	chr7:1158874-1159147(-)$1	273	181	200	14.1296
CCCCCAUGGUUAAUUGUGU	chr16:81551554-81551827(+)$1	273	68	87	15.4916
GAGAGGCCCAUGGAAGCUG	chr22:49863975-49864221(-)$1	246	147	166	15.4138
AGCCAGCCGGAAAUUGCUU	chr19:5078206-5078463(+)$1	257	148	167	15.3588
UGGGGCUGAGUCCUGGGCA	chr16:88561488-88561731(+)$1	243	1	20	14.9690
GGCGGGCGCAGUGGAGCUG	chr9:139126558-139126811(-)$1	253	189	208	15.3069
ccauuuucccucccagaaa	chr19:893455-893689(+)$1	234	145	164	14.0686
UGGAAACUUACCUCUGGAU	chr1:246141582-246141813(-)$1	231	31	50	13.5967
AUUAUUUGAAAAGAAAAAU	chr19:5079977-5080215(+)$1	238	199	218	13.1274
GAAAGgucaaaguauauuu	chr16:89030874-89031108(-)$1	234	10	29	14.1296
AUGCCUAGGUGGUUAUGGG	chr7:1879388-1879682(-)$1	294	132	151	14.1317
GACAGACAGAAGGACGGAU	chr12:133128995-133129250(+)$1	255	209	228	13.2062
gGCUCCGAAUCCGAAUGUG	chr19:11170434-11170662(+)$1	228	111	130	13.6512
UGGAGCCGGCCAAGGGGUG	chr7:1887361-1887627(-)$1	266	172	191	15.1675
agggaggugucuccucuuc	chr7:2007488-2007747(-)$1	259	56	75	13.3938
AGGGCAGGAGACAGACAGC	chr11:71725591-71725842(-)$1	251	120	139	13.0037
CUCUGUCGACAUUAGGAGG	chr16:89347358-89347609(-)$1	251	32	51	13.8108
CAAAUCCGGGCAGAGGGAC	chr22:20837198-20837431(-)$1	233	87	106	15.1164
GGAUGAGGCCUUCCACUCU	chr22:49941435-49941707(-)$1	272	87	106	15.1664
CUGUGUGUCAGUUCCUACA	chr16:89027594-89027837(-)$1	243	145	164	14.0876
GGCGCCAUCUUCUUCUGGG	chr8:94753045-94753286(-)$1	241	70	89	14.3156
agguucuggaugaagggaa	chr18:75689953-75690210(-)$1	257	28	47	14.1296
UGCGGGUAAGUUGUGAUCG	chr16:1368456-1368684(+)$1	228	163	182	15.0914
GCAGAGGAACUCCAGCCCC	chr17:41466041-41466361(-)$1	320	280	299	13.3228
GGGCGUCCUGUUUCAGAUA	chr9:139128057-139128298(-)$1	241	53	72	15.4276
AGAAAGCAGCAGCAGGCUU	chr16:89029009-89029271(-)$1	262	67	86	14.0141
UACUCCUGUUGAUGAGGGC	chr5:71493618-71493874(+)$1	256	156	175	15.4138
CUUCCGGAAGCCCCGCUGG	chr16:89346585-89346860(-)$1	275	124	143	14.1831
accucuccgcuccuagagc	chr19:37549468-37549687(+)$1	219	8	27	13.9988
GGCACUGGAGCUGGGCAGG	chr22:48183760-48184019(+)$1	259	19	38	15.2617
AGGCUUGUGUGUGUGUGAG	chr16:31198484-31198728(+)$1	244	45	64	14.0908
CAGAGAGAAGCCACACUUU	chr22:50014320-50014570(-)$1	250	198	217	14.0141
ACGGGAGAAGGAUGGCGGA	chr16:87735153-87735409(-)$1	256	11	30	14.0891
GGCGAUCGAGGAGUAGCAC	chr2:3322388-3322621(-)$1	233	52	71	13.5967
ggugggugucguaagggcc	chr7:1153166-1153409(-)$1	243	114	133	14.3174
GGCUGCUUGCUUGUUGGCA	chr7:1887656-1887908(-)$1	252	43	62	13.9637
cgugccaguuuugugugga	chr22:49938364-49938605(-)$1	241	148	167	14.9062
aggccaaagaggaaguuga	chr7:23455228-23455470(-)$1	242	74	93	15.1213
GUCACAGAAGAACAGCUGC	chr16:89031986-89032254(-)$1	268	222	241	14.2188
GCCCUGGCUACGGCACCAG	chr22:20050697-20050991(+)$1	294	249	268	14.0653
GGGCGGGGGAGGGGGCCUG	chr16:89008449-89008699(-)$1	250	100	119	13.3938
guguguggaggggaacaca	chr16:1367239-1367548(+)$1	309	156	175	13.9694
GGCCUCCGAACCCAUGGAA	chr1:2213897-2214179(+)$1	282	147	166	15.1138
ccagauccaaccacugauu	chr15:29233374-29233626(+)$1	252	192	211	13.3938
gacagacgggcaagagcau	chr7:23454363-23454614(-)$1	251	195	214	14.1353
UCCUGGAGAUGUGCGUUUG	chr22:49970313-49970567(-)$1	254	77	96	14.0435
UGAGAGGAAAAAUAGCCUC	chr11:71724803-71725026(-)$1	223	137	156	14.0773
UCCACUGGCACAGAGCAGG	chr16:89038655-89038905(-)$1	250	182	201	15.2225
CAGCCUGGCCACACACAGA	chr16:89032099-89032353(-)$1	254	164	183	12.7618
UUUACUGCAUGUCAUUGGU	chr17:20801640-20801922(+)$1	282	197	216	14.3219

#DB
(..((((........))))	chr2:127438110-127438364(+)$1	1	76	95	14.1891
).(((((........))))	chr8:145000147-145000427(-)$1	1	149	168	13.1274
((...((........))..	chr22:49826518-49826771(-)$1	1	134	153	13.9417
(...(((........))).	chr1:2170766-2171033(+)$1	1	77	96	15.1873
(((((((........))))	chr8:94745984-94746207(-)$1	1	33	52	14.1296
)))((((........))))	chr1:16256852-16257091(+)$1	1	132	151	13.8311
(((.(((........))).	chr8:58118233-58118525(+)$1	1	237	256	15.4225
.((((((........))).	chr22:49942354-49942604(-)$1	1	189	208	15.0797
(((.(((........))).	chr19:5077952-5078239(+)$1	1	181	200	15.1675
(((((((........))))	chr17:80534319-80534608(+)$1	1	133	152	14.0773
(((((.(........).))	chr19:1408464-1408710(+)$1	1	196	215	13.6333
...((((........))))	chr11:62298859-62299092(-)$1	1	71	90	14.0141
.((((((........))))	chr16:89042872-89043115(-)$1	1	94	113	13.4212
..(..((........))..	chr1:2214149-2214436(+)$1	1	196	215	13.9380
((.((((........))))	chr19:50156283-50156535(+)$1	1	125	144	14.0686
((((.((........)).)	chr5:71492199-71492446(+)$1	1	0	19	13.3228
..(((((........))))	chr8:145000399-145000673(-)$1	1	212	231	14.2669
((...((........))..	chr1:2214280-2214540(+)$1	1	55	74	13.5573
(((((((........))))	chr7:1158874-1159147(-)$1	1	181	200	14.1296
(.(.(((........))).	chr16:81551554-81551827(+)$1	1	68	87	15.4916
(((.(((........))).	chr22:49863975-49864221(-)$1	1	147	166	15.4138
(.(.(((........))).	chr19:5078206-5078463(+)$1	1	148	167	15.3588
(((((((........))).	chr16:88561488-88561731(+)$1	1	1	20	14.9690
..(.(((........))).	chr9:139126558-139126811(-)$1	1	189	208	15.3069
((.((((........))))	chr19:893455-893689(+)$1	1	145	164	14.0686
((((..(........)..)	chr1:246141582-246141813(-)$1	1	31	50	13.5967
).(((((........))))	chr19:5079977-5080215(+)$1	1	199	218	13.1274
(((((((........))))	chr16:89030874-89031108(-)$1	1	10	29	14.1296
...((((........))))	chr7:1879388-1879682(-)$1	1	132	151	14.1317
..((..(........)..)	chr12:133128995-133129250(+)$1	1	209	228	13.2062
(((((((........)).)	chr19:11170434-11170662(+)$1	1	111	130	13.6512
(((.(((........))).	chr7:1887361-1887627(-)$1	1	172	191	15.1675
.((((((........))))	chr7:2007488-2007747(-)$1	1	56	75	13.3938
.((((.(........).))	chr11:71725591-71725842(-)$1	1	120	139	13.0037
((...((........))))	chr16:89347358-89347609(-)$1	1	32	51	13.8108
(...(((........))).	chr22:20837198-20837431(-)$1	1	87	106	15.1164
((..(((........))).	chr22:49941435-49941707(-)$1	1	87	106	15.1664
)(.((((........))))	chr16:89027594-89027837(-)$1	1	145	164	14.0876
(((.(((........))))	chr8:94753045-94753286(-)$1	1	70	89	14.3156
(((((((........))))	chr18:75689953-75690210(-)$1	1	28	47	14.1296
(((.(((........))).	chr16:1368456-1368684(+)$1	1	163	182	15.0914
((((.((........)).)	chr17:41466041-41466361(-)$1	1	280	299	13.3228
((..(((........))).	chr9:139128057-139128298(-)$1	1	53	72	15.4276
(((((((........))))	chr16:89029009-89029271(-)$1	1	67	86	14.0141
(((.(((........))).	chr5:71493618-71493874(+)$1	1	156	175	15.4138
(.(((((........))))	chr16:89346585-89346860(-)$1	1	124	143	14.1831
.((((((........))).	chr19:37549468-37549687(+)$1	1	8	27	13.9988
(((.(((........))).	chr22:48183760-48184019(+)$1	1	19	38	15.2617
(.(((((........))))	chr16:31198484-31198728(+)$1	1	45	64	14.0908
(((((((........))))	chr22:50014320-50014570(-)$1	1	198	217	14.0141
.((...(........)...	chr16:87735153-87735409(-)$1	1	11	30	14.0891
((((..(........)..)	chr2:3322388-3322621(-)$1	1	52	71	13.5967
(((((.(........).))	chr7:1153166-1153409(-)$1	1	114	133	14.3174
((.((((........))))	chr7:1887656-1887908(-)$1	1	43	62	13.9637
(((.(((........))))	chr22:49938364-49938605(-)$1	1	148	167	14.9062
((.((((........))).	chr7:23455228-23455470(-)$1	1	74	93	15.1213
....(((........))).	chr16:89031986-89032254(-)$1	1	222	241	14.2188
(((((((........))))	chr22:20050697-20050991(+)$1	1	249	268	14.0653
.((((((........))))	chr16:89008449-89008699(-)$1	1	100	119	13.3938
(((((((........))))	chr16:1367239-1367548(+)$1	1	156	175	13.9694
(((.(((........))).	chr1:2213897-2214179(+)$1	1	147	166	15.1138
.((((((........))))	chr15:29233374-29233626(+)$1	1	192	211	13.3938
((((..(........)..)	chr7:23454363-23454614(-)$1	1	195	214	14.1353
(((((((........))))	chr22:49970313-49970567(-)$1	1	77	96	14.0435
(((((((........))))	chr11:71724803-71725026(-)$1	1	137	156	14.0773
(((.(((........))))	chr16:89038655-89038905(-)$1	1	182	201	15.2225
..))(((........)))(	chr16:89032099-89032353(-)$1	1	164	183	12.7618
(..((((........))))	chr17:20801640-20801922(+)$1	1	197	216	14.3219

#PSSM
e : 0.23	d : 0.19	f : 0.11	c : 0.08	! : 0.08	g : 0.07	[ : 0.04	# : 0.02	: : 0.02	= : 0.01	" : 0.01	h : 0.01	a : 0.01	$ : 0.01	i : 0.01	q : 0.01	
d : 0.19	e : 0.16	f : 0.13	c : 0.10	! : 0.07	g : 0.07	[ : 0.05	" : 0.04	: : 0.02	# : 0.02	= : 0.01	a : 0.01	h : 0.01	b : 0.01	$ : 0.01	i : 0.01	q : 0.01	
e : 0.27	f : 0.11	d : 0.10	" : 0.08	[ : 0.07	! : 0.05	g : 0.05	a : 0.05	c : 0.04	b : 0.04	= : 0.01	# : 0.01	h : 0.01	$ : 0.01	i : 0.01	
d : 0.20	e : 0.20	[ : 0.20	f : 0.10	" : 0.08	g : 0.05	! : 0.04	c : 0.02	b : 0.02	a : 0.01	$ : 0.01	
c : 0.35	d : 0.17	e : 0.17	f : 0.07	! : 0.07	" : 0.05	g : 0.05	[ : 0.02	
c : 0.35	d : 0.16	e : 0.14	b : 0.10	g : 0.05	f : 0.05	! : 0.05	[ : 0.04	" : 0.01	
c : 0.35	d : 0.16	e : 0.14	a : 0.11	b : 0.10	g : 0.05	f : 0.05	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.35	d : 0.16	e : 0.14	a : 0.11	b : 0.10	g : 0.05	f : 0.05	
c : 0.35	d : 0.16	e : 0.14	b : 0.10	g : 0.05	f : 0.05	2 : 0.05	] : 0.04	3 : 0.01	
c : 0.35	d : 0.17	e : 0.17	2 : 0.08	f : 0.07	g : 0.05	] : 0.04	3 : 0.02	
d : 0.22	e : 0.22	] : 0.20	f : 0.10	2 : 0.08	g : 0.05	3 : 0.04	b : 0.01	h : 0.01	4 : 0.01	c : 0.01	

#score	968.6814056716636
#seq	68
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_transcript_m1_run1.txt

#BEAR
eee[ggggggg[ccc[bboooooobb]ccc]ggggggg22	chr10:134402481-134402774(+)$1	293	227	267	14.1614
eeeee[a[a[a[a[cccmmmmccc]a]a]a]a]eeeee77	chr15:40342693-40342988(+)$1	295	225	265	13.2611
iiiii"""==========mmmm==========iiiiiiii	chr12:109124037-109124297(-)$1	260	175	215	15.2653
==========!!a!!bbmmmmbb]a22=============	chr1:2168653-2168903(+)$1	250	168	208	16.1762
"""ccc[a[ccc!!a[aooooooaa22ccc]a]ccc]eee	chr19:3693181-3693437(-)$1	256	123	163	16.9914
a!!eeeee[ccc!!ccclllccc]ccceeeee]a]bb]ee	chr11:66384509-66384825(+)$1	316	237	277	13.0151
ccc!!a[==========oooooo==========]a22ccc	chr9:139235381-139235651(+)$1	270	75	115	16.2619
ggg"""ccc[bb!!cccnnnnnccc22bb]cccggggggg	chr7:5569873-5570157(-)$1	284	74	114	15.2449
=========!!bb[aooooooa]bb333============	chr16:88959319-88959564(-)$1	245	76	116	17.4702
eeee===========cccmmmmccc]===========777	chr19:532337-532588(+)$1	251	30	70	13.6224
gggggggdddd"""cccnnnnnccc333dddd]ggggggg	chr7:921240-921471(+)$1	231	109	149	16.0602
b!!ddddffffff[cccnnnnnccc]ffffff333dddd]	chr7:1479701-1479953(-)$1	252	100	140	12.6729
===!!bb"""ccc[cccmmmmccc]cccbb]=========	chr11:2003557-2003821(+)$1	264	17	57	14.8754
========eeeeecccooooooccc333eeeee]======	chr17:75475811-75476070(+)$1	259	10	50	17.7188
ggggggeeeee"""cccooooooccc22eeeee8888888	chr19:2270335-2270595(+)$1	260	185	225	13.6339
==========####ddddoooooodddd333=========	chr22:20124067-20124302(+)$1	235	154	194	16.4936
ggggggg[eeeeecccooooooccc22eeeee]ggggggg	chr19:801831-802058(+)$1	227	139	179	16.3269
e"""a!!gggggggcccnnnnnccc4444ggggggg22a4	chr12:133109327-133109588(+)$1	261	21	61	15.6208
a[ffffff[gggggggooooooggggggg22ffffff]a]	chr19:3694494-3694742(-)$1	248	186	226	13.2387
ggggggg[ccc[a[bbbbnnnnnbb]bb]a]ccc]ggggg	chr19:56631583-56631815(-)$1	232	123	163	12.8288
fff[ggggggg[ddddoooooodddd]ggggggg]fffff	chr7:2176964-2177279(-)$1	315	181	221	14.2692
c!!iiiiiiiii!!cccmmmmccciiiiiiiiiccc]ddd	chr11:65211777-65212063(+)$1	286	47	87	14.7518
dddd####ggggggg[annnnna]ggggggg333ddddff	chr4:2257388-2257638(-)$1	250	12	52	12.5436
iiiiiii[ccc!!ddddoooooodddd4444ccciiiiii	chr12:133140184-133140434(+)$1	250	17	57	16.0228
c"""ddddbbccc[cccooooooccc]ccc]bb]dddd44	chr22:50030950-50031198(-)$1	248	31	71	14.9623
cc[bb[ffffff[cccccclllccc4444ccc]ffffff]	chr17:79383792-79384027(+)$1	235	181	221	12.6932
ddd!!ffffff!!cccooooooccc22ffffff22dddd:	chr5:139032760-139033041(+)$1	281	50	90	13.4147
gggg[ffffff!!ddddmmmmdddd22ffffff333gggg	chr10:126791627-126791939(-)$1	312	248	288	12.9454
!ccc!!ccc####ddddmmmmdddd22ccc22ccc22eee	chr16:85680833-85681087(+)$1	254	135	175	12.7340
b:ggggggg[gggggggooooooggggggg]gggggggGG	chr11:638058-638334(+)$1	276	136	176	13.1781
!!ccc"""eeeee[cccnnnnnccc22eeeee]ccca]hh	chr11:773656-773919(-)$1	263	186	226	14.5947
==========####cccqqqqqqqqccc4444========	chr7:2169439-2169700(-)$1	261	145	185	13.6986
###cccccc[cccrrrrrrrrrccc333ccc333ccc444	chr10:126738557-126738807(-)$1	250	85	125	13.7417
========accccccqqqqqqqqccc]ccc]a4444====	chr6:7109786-7110047(+)$1	261	3	43	13.2549
c[a[dddd!!ccc[ccclllcccccc22dddd]a]ccc22	chr21:46887047-46887311(+)$1	264	131	171	13.6892
cc[eeeee[cccccc[ammmma]ccc]ccceeeee]cccf	chr7:2158265-2158522(-)$1	257	67	107	12.8593
ee!!ggggggg"""cccooooooccc]ggggggg55555e	chr20:31148784-31149057(-)$1	273	14	54	13.8273
c[ccc[ccc[gggggggnnnnnggggggg]ccc333ccc]	chr22:20125254-20125547(+)$1	293	53	93	13.5643
eeee!!dddd!!bb[aooooooabb22dddd22eeeee]c	chr12:133145774-133146068(+)$1	294	129	169	13.0644
a[eeeee!!a####cccooooooccc333a22eeeee]ad	chr9:139247582-139247837(+)$1	255	75	115	16.3975
cc[dddd"""eeeeebboooooobb]eeeee333dddd]c	chr22:20935794-20936065(+)$1	271	187	227	12.6019
$$$$bb[ccc####cccmmmmccc333ccc]bb22ccc]b	chr22:50609658-50609933(+)$1	275	104	144	13.5611
eeeea[eeeee[a[cccnnnnnccc]a22eeeee]a22ee	chr20:60910804-60911092(-)$1	288	208	248	13.3134
e[ccc"""ccc[ddddoooooodddd]ccc]ccc]eeeee	chr16:89002194-89002482(-)$1	288	221	261	14.7936
gg!!ggggggg"""ddddllldddd4444ggggggggggg	chr19:34881996-34882333(+)$1	337	35	75	15.2154
ggggggg[ccc"""bblllbb333ccc22ggggggg4444	chr2:10329326-10329604(+)$1	278	82	122	12.8236
==========!!a!!bbmmmmbb]a22=============	chr1:2168755-2168983(+)$1	228	66	106	16.1762
ggg!!dddd[cccddddllldddd333ccc]ddddggggg	chr11:62311353-62311622(-)$1	269	192	232	13.0233
ffffffffcccdddd[aooooooa333dddd]ccc]ffff	chr11:1981147-1981426(+)$1	279	160	200	13.5173
!!cccdddddddd[cccoooooocccdddd22dddd]ccc	chr17:7746463-7746740(+)$1	277	163	203	13.4026
====="""ccc"""ammmma333ccc22============	chr4:1239450-1239719(-)$1	269	93	133	15.1483
iiiiiii[eeeee!!ccclllccc333eeeee>>>>>>>>	chr19:940919-941168(+)$1	249	186	226	13.3591
=======[ccc"""cccnnnnnccc22ccc]=========	chr22:23541702-23541921(+)$1	219	170	210	18.8197
gg####a!!dddd[cccooooooccc]dddd22agggggg	chr11:374237-374546(+)$1	309	34	74	15.8717
!ccc[bb[a[ffffffooooooffffff]a]bb]ccc]gg	chr8:142427121-142427392(+)$1	271	37	77	12.7304
=====[eeeee[bba[aooooooa]a]bb22eeeee====	chr6:42750651-42750925(+)$1	274	139	179	14.8222
===[ggggggg[a[ddddoooooodddd]a]ggggggg==	chr19:658602-658858(-)$1	256	113	153	15.4611

#otherMatches

#Seq PSSM
ACCAGGCGUUCACUCUGCCUGCCUGCUGAGGGAGCGCUGG	chr10:134402481-134402774(+)$1	293	227	267	14.1614
gugugggggggguuugugugugcauggugugugugcgcgu	chr15:40342693-40342988(+)$1	295	225	265	13.2611
UUUUUGGGAGUGUUCAAAGGAUUUUGAACGCUGGAAAAGG	chr12:109124037-109124297(-)$1	260	175	215	15.2653
GUUUCCUUUGAUGUCAGUCUUCUUcuacaggggaaaccau	chr1:2168653-2168903(+)$1	250	168	208	16.1762
UCUGGCUGAGUGAAGAGAGGACCCCAGCACCCUGCCCGGC	chr19:3693181-3693437(-)$1	256	123	163	16.9914
CGGCGGCCACUGCGAGCCAAGCUACGGGGCCGGGGACGCG	chr11:66384509-66384825(+)$1	316	237	277	13.0151
UCCAGGGUUGUGGGGGGGUCUUGCUCCCCACAGGCACGGA	chr9:139235381-139235651(+)$1	270	75	115	16.2619
UGCAGAGCCGCCGUCUGGGCCGCAGCGGGGGGCGCAUGGG	chr7:5569873-5570157(-)$1	284	74	114	15.2449
CUCAUUUUCCAAGUCUCCUGUGCCUCCAGAAAGUGGGAAG	chr16:88959319-88959564(-)$1	245	76	116	17.4702
GUUAGGCUCUUGGCCCCCGGAGGGGUGGCCGGGGGCCCUC	chr19:532337-532588(+)$1	251	30	70	13.6224
gcaggcuugguauauagguaaacuagugacuaggguuugu	chr7:921240-921471(+)$1	231	109	149	16.0602
GCUGGGAGGUGGCAUUUGCUCAGAAGGCCACCUGCUCCCU	chr7:1479701-1479953(-)$1	252	100	140	12.6729
UCCAGGAAGCCCCAGGGGCACUCCAGGGUCGGGAAGGGGC	chr11:2003557-2003821(+)$1	264	17	57	14.8754
CCCCCCAGGUCCUGCUGGGGAGGGUUGAGGGAUGCUGGGG	chr17:75475811-75476070(+)$1	259	10	50	17.7188
GGGGGUGGCGCACUCCGACAGCCCGGCAGCGCCCUGGGAA	chr19:2270335-2270595(+)$1	260	185	225	13.6339
ugcaugcaaguguucaugcauguauauguguuuuguaugc	chr22:20124067-20124302(+)$1	235	154	194	16.4936
CUGUUCAUUCUCUGACCCUAAAGUCUUGGGGACUGAACAG	chr19:801831-802058(+)$1	227	139	179	16.3269
UGAACAGAGGGGCCGGUGAGAGGCCCUGAGGCCCCUGAGG	chr12:133109327-133109588(+)$1	261	21	61	15.6208
CGUGGGCAGUGCUCUGUGGGGUUGGGGCAGGUGUCCAGGU	chr19:3694494-3694742(-)$1	248	186	226	13.2387
UCCAGGGAGCUGACCCCAAUUCAUGUGGAUGAGUGCUCUG	chr19:56631583-56631815(-)$1	232	123	163	12.8288
ccugccgcucugugacguuucuguuagagagcggaaggug	chr7:2176964-2177279(-)$1	315	181	221	14.2692
UGAUUCUGCUCAGAUUCAUCAGGAUGAGUAGAAGGCAccc	chr11:65211777-65212063(+)$1	286	47	87	14.7518
GGCAGCGGCAGCCAGGCUCUCUGGUUGGCUGGGAUGCUGG	chr4:2257388-2257638(-)$1	250	12	52	12.5436
UUUACUGGCAGUAAAAUUCACCUAUUUAUUUUUGCAGUAA	chr12:133140184-133140434(+)$1	250	17	57	16.0228
CAGGCCUGGCCUCACCCGGGGCAGGGCGGGUGCUCAGGGA	chr22:50030950-50031198(-)$1	248	31	71	14.9623
GGAGCCUGCACGAGCUGCCGGAGGCACAUGGCCUGUGCAC	chr17:79383792-79384027(+)$1	235	181	221	12.6932
UGACAGCGUGUAUCCACGGCAAUGGUAGCAUGUGAUUACG	chr5:139032760-139033041(+)$1	281	50	90	13.4147
GGGGAGGUGUGCAUGUUCUGAGAUAAUCACGCCGUGUUCU	chr10:126791627-126791939(-)$1	312	248	288	12.9454
ggucgugguggugguuguaaacagcgaaccuaggcaaacc	chr16:85680833-85681087(+)$1	254	135	175	12.7340
CACACCAGGUCUGGCCCUCGAGUGGGUCGGCCUUGGUGCC	chr11:638058-638334(+)$1	276	136	176	13.1781
CUGGUCCCUGUGGAGGGUCUGUCCUGGCCACGCACUCGGG	chr11:773656-773919(-)$1	263	186	226	14.5947
CAGCGGGUGCCAUGGGAACCAUGAGUCCGUCUGCACCUGC	chr7:2169439-2169700(-)$1	261	145	185	13.6986
AUAGAGUAUCUGCCCUCAUAAAGCAAACAUAAUCCUCCAC	chr10:126738557-126738807(-)$1	250	85	125	13.7417
GUGCGGGCCCGGGCCGCUUGACAGGCGCCGCGUGCAGCUC	chr6:7109786-7110047(+)$1	261	3	43	13.2549
GGCGAGGGAUGGACAGGGCUCCUUCUGACCCUGGGCUACU	chr21:46887047-46887311(+)$1	264	131	171	13.6892
CUGUGAAAUGCCUGUGAGAUAUGACGUGGCUUUUGGAGGG	chr7:2158265-2158522(-)$1	257	67	107	12.8593
CAAGGGCCCCCAUGGUCCCUGGUGACAGGGGGCUGCUGGU	chr20:31148784-31149057(-)$1	273	14	54	13.8273
UGUUUGAGUGCUGCCUGUGUGCCAGGCAGGGCUGGGGAGG	chr22:20125254-20125547(+)$1	293	53	93	13.5643
GGUGACGGGCAGUCACAGUAGGGGGAAGCCUCCCACCCAG	chr12:133145774-133146068(+)$1	294	129	169	13.0644
CGGGCCUCUGUGAAGCCGGGUGGGGUGGUCUUGGGCCGGG	chr9:139247582-139247837(+)$1	255	75	115	16.3975
AUCUGUGCUCCACCCCAGGAAGGUGUGGGUGUUUUACAUA	chr22:20935794-20936065(+)$1	271	187	227	12.6019
UUGACAGCAGAGAGCUGAUUACAGGGGCUGGUGGAGCUGC	chr22:50609658-50609933(+)$1	275	104	144	13.5611
UCCUGGAGGGAAUGUUGGGGUGCAGGGGGUUCCUGCGUGG	chr20:60910804-60911092(-)$1	288	208	248	13.3134
uuuaccccuucgggcugugaugagCUGGGAUGUGUGUGUC	chr16:89002194-89002482(-)$1	288	221	261	14.7936
UCCAGUGCCUGAGGAGAUAGCAUCUGGCACAGGUAUGAAG	chr19:34881996-34882333(+)$1	337	35	75	15.2154
UUCUGGAGGCUGAAGCCAGGUGGAAGUGAUCUAGAGGGGA	chr2:10329326-10329604(+)$1	278	82	122	12.8236
GUUUCCUUUGAUGUCAGUCUUCUUcuacaggggaaaccau	chr1:2168755-2168983(+)$1	228	66	106	16.1762
GAGCUAGUCCUACUCCUUAUGGGAACAGUGUGGCUCUCUC	chr11:62311353-62311622(-)$1	269	192	232	13.0233
GUGCUCAUAGCUGGACGGCCCCACUUCUCUAUGCUGAUGA	chr11:1981147-1981426(+)$1	279	160	200	13.5173
GACCACAGUUCAGCGCCGUACCUGGCUUGGUUACUGAUGG	chr17:7746463-7746740(+)$1	277	163	203	13.4026
UUGGGACCAGGCCCCUUCUGCACCCUCCCCUGGCACCGCC	chr4:1239450-1239719(-)$1	269	93	133	15.1483
CUGCUGCCAAGCGCCGGCCCCGCCCCAUGCUUUCUAAUAA	chr19:940919-941168(+)$1	249	186	226	13.3591
GGAGAGGGGAAAAUGGAUGUUUUCUUCUUUGUCUCUCCUU	chr22:23541702-23541921(+)$1	219	170	210	18.8197
CAAAGCGGAGAGAGCCUGGGGGAAGGAUUUUUACUGUGGC	chr11:374237-374546(+)$1	309	34	74	15.8717
ucauagucuggggagcacaugaguucccggcacaaugcuc	chr8:142427121-142427392(+)$1	271	37	77	12.7304
CAUCUGCGGGCGGCCGCGGCGAGGAGAGCAGGUCCGGGGU	chr6:42750651-42750925(+)$1	274	139	179	14.8222
GAGGCGGGGCCCCAGCCUGGGCUGAGGCAGUGGCUUCGCU	chr19:658602-658858(-)$1	256	113	153	15.4611

#DB
(((.(((((((.(((.((......)).))).)))))))..	chr10:134402481-134402774(+)$1	1	227	267	14.1614
(((((.(.(.(.(.(((....))).).).).).)))))..	chr15:40342693-40342988(+)$1	1	225	265	13.2611
(((((...((((((((((....))))))))))))))))))	chr12:109124037-109124297(-)$1	1	175	215	15.2653
((((((((((..(..((....)).)..)))))))))))))	chr1:2168653-2168903(+)$1	1	168	208	16.1762
...(((.(.(((..(.(......))..))).).))).)))	chr19:3693181-3693437(-)$1	1	123	163	16.9914
(..(((((.(((..(((...))).)))))))).).)).))	chr11:66384509-66384825(+)$1	1	237	277	13.0151
(((..(.((((((((((......)))))))))).)..)))	chr9:139235381-139235651(+)$1	1	75	115	16.2619
(((...(((.((..(((.....)))..)).))))))))))	chr7:5569873-5570157(-)$1	1	74	114	15.2449
(((((((((..((.(......).))...))))))))))))	chr16:88959319-88959564(-)$1	1	76	116	17.4702
((((((((((((((((((....))).)))))))))))...	chr19:532337-532588(+)$1	1	30	70	13.6224
(((((((((((...(((.....)))...)))).)))))))	chr7:921240-921471(+)$1	1	109	149	16.0602
(..((((((((((.(((.....))).))))))...)))).	chr7:1479701-1479953(-)$1	1	100	140	12.6729
(((..((...(((.(((....))).))))).)))))))))	chr11:2003557-2003821(+)$1	1	17	57	14.8754
((((((((((((((((......)))...))))).))))))	chr17:75475811-75476070(+)$1	1	10	50	17.7188
(((((((((((...(((......)))..))))).......	chr19:2270335-2270595(+)$1	1	185	225	13.6339
((((((((((....((((......))))...)))))))))	chr22:20124067-20124302(+)$1	1	154	194	16.4936
(((((((.((((((((......)))..))))).)))))))	chr19:801831-802058(+)$1	1	139	179	16.3269
(...(..((((((((((.....)))....)))))))..).	chr12:133109327-133109588(+)$1	1	21	61	15.6208
(.((((((.(((((((......)))))))..)))))).).	chr19:3694494-3694742(-)$1	1	186	226	13.2387
(((((((.(((.(.((((.....)).)).).))).)))))	chr19:56631583-56631815(-)$1	1	123	163	12.8288
(((.(((((((.((((......)))).))))))).)))))	chr7:2176964-2177279(-)$1	1	181	221	14.2692
(..(((((((((..(((....))))))))))))))).)))	chr11:65211777-65212063(+)$1	1	47	87	14.7518
((((....(((((((.(.....).)))))))...))))((	chr4:2257388-2257638(-)$1	1	12	52	12.5436
(((((((.(((..((((......))))....)))))))))	chr12:133140184-133140434(+)$1	1	17	57	16.0228
(...(((((((((.(((......))).))).)).))))..	chr22:50030950-50031198(-)$1	1	31	71	14.9623
((.((.((((((.((((((...)))....))).)))))).	chr17:79383792-79384027(+)$1	1	181	221	12.6932
(((..((((((..(((......)))..))))))..)))).	chr5:139032760-139033041(+)$1	1	50	90	13.4147
((((.((((((..((((....))))..))))))...))))	chr10:126791627-126791939(-)$1	1	248	288	12.9454
.(((..(((....((((....))))..)))..)))..)))	chr16:85680833-85681087(+)$1	1	135	175	12.7340
).(((((((.(((((((......))))))).)))))))))	chr11:638058-638334(+)$1	1	136	176	13.1781
..(((...(((((.(((.....)))..))))).)))).))	chr11:773656-773919(-)$1	1	186	226	14.5947
((((((((((....(((........)))....))))))))	chr7:2169439-2169700(-)$1	1	145	185	13.6986
...((((((.(((.........)))...)))...)))...	chr10:126738557-126738807(-)$1	1	85	125	13.7417
(((((((((((((((........))).))).)....))))	chr6:7109786-7110047(+)$1	1	3	43	13.2549
(.(.((((..(((.(((...))))))..)))).).)))..	chr21:46887047-46887311(+)$1	1	131	171	13.6892
((.(((((.((((((.(....).))).)))))))).))))	chr7:2158265-2158522(-)$1	1	67	107	12.8593
((..(((((((...(((......))).))))))).....)	chr20:31148784-31149057(-)$1	1	14	54	13.8273
(.(((.(((.(((((((.....))))))).)))...))).	chr22:20125254-20125547(+)$1	1	53	93	13.5643
((((..((((..((.(......)))..))))..))))).)	chr12:133145774-133146068(+)$1	1	129	169	13.0644
(.(((((..(....(((......)))...)..))))).))	chr9:139247582-139247837(+)$1	1	75	115	16.3975
((.((((...(((((((......)).)))))...)))).)	chr22:20935794-20936065(+)$1	1	187	227	12.6019
....((.(((....(((....)))...))).))..))).)	chr22:50609658-50609933(+)$1	1	104	144	13.5611
(((((.(((((.(.(((.....))).)..))))).)..))	chr20:60910804-60911092(-)$1	1	208	248	13.3134
(.(((...(((.((((......)))).))).))).)))))	chr16:89002194-89002482(-)$1	1	221	261	14.7936
((..(((((((...((((...))))....)))))))))))	chr19:34881996-34882333(+)$1	1	35	75	15.2154
(((((((.(((...((...))...)))..)))))))....	chr2:10329326-10329604(+)$1	1	82	122	12.8236
((((((((((..(..((....)).)..)))))))))))))	chr1:2168755-2168983(+)$1	1	66	106	16.1762
(((..((((.(((((((...))))...))).)))))))))	chr11:62311353-62311622(-)$1	1	192	232	13.0233
(((((((((((((((.(......)...)))).))).))))	chr11:1981147-1981426(+)$1	1	160	200	13.5173
..(((((((((((.(((......)))))))..)))).)))	chr17:7746463-7746740(+)$1	1	163	203	13.4026
(((((...(((...(....)...)))..))))))))))))	chr4:1239450-1239719(-)$1	1	93	133	15.1483
(((((((.(((((..(((...)))...)))))........	chr19:940919-941168(+)$1	1	186	226	13.3591
(((((((.(((...(((.....)))..))).)))))))))	chr22:23541702-23541921(+)$1	1	170	210	18.8197
((....(..((((.(((......))).))))..)))))))	chr11:374237-374546(+)$1	1	34	74	15.8717
.(((.((.(.((((((......)))))).).)).))).))	chr8:142427121-142427392(+)$1	1	37	77	12.7304
(((((.(((((.(((.(......).).))..)))))))))	chr6:42750651-42750925(+)$1	1	139	179	14.8222
(((.(((((((.(.((((......)))).).)))))))))	chr19:658602-658858(-)$1	1	113	153	15.4611

#PSSM
= : 0.21	g : 0.17	e : 0.14	c : 0.14	! : 0.07	i : 0.05	a : 0.05	b : 0.03	f : 0.03	d : 0.03	" : 0.01	# : 0.01	$ : 0.01	
= : 0.21	g : 0.17	e : 0.10	c : 0.10	! : 0.08	[ : 0.08	i : 0.05	" : 0.05	f : 0.03	d : 0.03	: : 0.01	# : 0.01	$ : 0.01	
= : 0.21	g : 0.15	c : 0.12	e : 0.10	! : 0.08	i : 0.05	" : 0.05	f : 0.05	[ : 0.05	d : 0.03	# : 0.03	a : 0.01	$ : 0.01	
= : 0.17	c : 0.14	e : 0.12	g : 0.12	! : 0.10	[ : 0.07	i : 0.07	" : 0.05	d : 0.05	f : 0.03	b : 0.01	$ : 0.01	# : 0.01	
g : 0.19	= : 0.19	c : 0.10	! : 0.10	e : 0.07	i : 0.07	d : 0.07	a : 0.03	f : 0.03	# : 0.03	b : 0.03	[ : 0.03	" : 0.01	
g : 0.19	= : 0.15	d : 0.10	[ : 0.08	" : 0.08	f : 0.07	e : 0.05	b : 0.05	! : 0.05	i : 0.05	c : 0.03	# : 0.03	a : 0.01	
g : 0.17	= : 0.15	d : 0.12	e : 0.10	f : 0.08	" : 0.07	c : 0.07	[ : 0.05	i : 0.05	a : 0.03	b : 0.03	! : 0.01	# : 0.01	
= : 0.15	[ : 0.14	g : 0.12	" : 0.10	d : 0.10	f : 0.10	e : 0.08	c : 0.08	! : 0.03	a : 0.01	i : 0.01	# : 0.01	
c : 0.21	g : 0.14	= : 0.14	e : 0.12	[ : 0.07	d : 0.07	f : 0.07	a : 0.05	! : 0.05	" : 0.03	i : 0.01	b : 0.01	
c : 0.21	g : 0.14	[ : 0.12	= : 0.12	e : 0.12	d : 0.07	f : 0.07	! : 0.03	" : 0.03	i : 0.01	b : 0.01	# : 0.01	a : 0.01	
c : 0.28	g : 0.17	e : 0.14	f : 0.08	# : 0.08	! : 0.07	= : 0.05	d : 0.05	a : 0.01	b : 0.01	i : 0.01	
c : 0.15	[ : 0.14	" : 0.12	! : 0.10	e : 0.08	# : 0.08	g : 0.08	= : 0.05	f : 0.05	d : 0.05	b : 0.03	i : 0.01	
c : 0.14	! : 0.12	" : 0.12	a : 0.10	e : 0.08	# : 0.08	g : 0.08	d : 0.08	= : 0.05	b : 0.05	f : 0.03	[ : 0.01	
[ : 0.21	c : 0.12	! : 0.12	" : 0.12	d : 0.12	g : 0.08	# : 0.07	= : 0.05	b : 0.03	r : 0.01	e : 0.01	f : 0.01	
c : 0.47	d : 0.17	a : 0.07	g : 0.07	= : 0.05	! : 0.05	b : 0.03	r : 0.01	[ : 0.01	e : 0.01	f : 0.01	
c : 0.45	d : 0.15	[ : 0.10	b : 0.08	g : 0.05	= : 0.03	o : 0.01	r : 0.01	q : 0.01	a : 0.01	m : 0.01	f : 0.01	
c : 0.40	o : 0.15	d : 0.12	b : 0.08	a : 0.08	= : 0.03	g : 0.03	r : 0.01	q : 0.01	l : 0.01	m : 0.01	
o : 0.38	m : 0.17	n : 0.15	l : 0.07	c : 0.05	d : 0.05	b : 0.03	q : 0.03	= : 0.01	r : 0.01	
o : 0.43	m : 0.21	n : 0.17	l : 0.10	q : 0.03	c : 0.01	r : 0.01	
o : 0.43	m : 0.19	n : 0.17	l : 0.10	q : 0.03	r : 0.01	b : 0.01	a : 0.01	
o : 0.43	m : 0.19	n : 0.17	l : 0.05	c : 0.03	q : 0.03	r : 0.01	b : 0.01	d : 0.01	3 : 0.01	
o : 0.42	n : 0.17	c : 0.12	d : 0.07	m : 0.03	b : 0.03	a : 0.03	q : 0.03	3 : 0.03	l : 0.01	r : 0.01	
c : 0.35	o : 0.28	d : 0.10	b : 0.03	] : 0.03	g : 0.03	a : 0.03	q : 0.03	3 : 0.03	= : 0.01	n : 0.01	f : 0.01	
c : 0.49	d : 0.12	] : 0.07	b : 0.07	o : 0.05	a : 0.05	g : 0.05	= : 0.03	q : 0.01	3 : 0.01	f : 0.01	
c : 0.43	d : 0.14	b : 0.08	g : 0.07	3 : 0.07	] : 0.05	a : 0.05	= : 0.03	i : 0.01	q : 0.01	f : 0.01	
c : 0.24	2 : 0.19	3 : 0.14	] : 0.08	d : 0.08	g : 0.07	4 : 0.05	a : 0.03	= : 0.03	b : 0.01	i : 0.01	f : 0.01	
2 : 0.24	] : 0.17	3 : 0.15	c : 0.07	d : 0.07	g : 0.07	= : 0.05	4 : 0.05	f : 0.03	b : 0.01	i : 0.01	e : 0.01	a : 0.01	
c : 0.21	d : 0.10	g : 0.10	= : 0.08	e : 0.08	3 : 0.08	2 : 0.08	f : 0.07	4 : 0.07	b : 0.05	a : 0.01	i : 0.01	
c : 0.19	= : 0.12	e : 0.12	d : 0.10	g : 0.10	4 : 0.08	] : 0.07	b : 0.05	f : 0.05	3 : 0.03	2 : 0.03	i : 0.01	
c : 0.21	e : 0.14	= : 0.12	g : 0.12	d : 0.10	a : 0.08	f : 0.05	] : 0.03	2 : 0.03	4 : 0.03	b : 0.01	3 : 0.01	i : 0.01	
] : 0.24	e : 0.15	= : 0.12	g : 0.10	d : 0.08	2 : 0.08	c : 0.07	f : 0.05	4 : 0.03	3 : 0.01	i : 0.01	
= : 0.17	e : 0.15	g : 0.14	c : 0.10	2 : 0.08	f : 0.07	a : 0.05	d : 0.05	3 : 0.05	b : 0.05	i : 0.01	4 : 0.01	] : 0.01	
= : 0.17	g : 0.14	] : 0.14	c : 0.12	e : 0.10	3 : 0.07	f : 0.05	b : 0.05	i : 0.03	2 : 0.03	d : 0.03	4 : 0.01	> : 0.01	
g : 0.19	= : 0.15	c : 0.14	e : 0.10	3 : 0.10	] : 0.07	a : 0.05	f : 0.03	2 : 0.03	d : 0.03	i : 0.01	8 : 0.01	4 : 0.01	> : 0.01	
g : 0.17	= : 0.17	c : 0.12	] : 0.10	e : 0.08	d : 0.08	3 : 0.05	i : 0.03	f : 0.03	2 : 0.03	a : 0.01	8 : 0.01	4 : 0.01	5 : 0.01	> : 0.01	
g : 0.21	= : 0.17	c : 0.12	d : 0.10	e : 0.08	f : 0.05	i : 0.03	2 : 0.03	3 : 0.03	] : 0.03	b : 0.01	8 : 0.01	4 : 0.01	5 : 0.01	a : 0.01	> : 0.01	
= : 0.21	g : 0.19	c : 0.10	d : 0.08	e : 0.07	2 : 0.07	f : 0.07	] : 0.05	i : 0.03	b : 0.01	8 : 0.01	a : 0.01	5 : 0.01	4 : 0.01	> : 0.01	
g : 0.19	= : 0.19	c : 0.10	d : 0.10	e : 0.08	] : 0.08	f : 0.05	i : 0.03	2 : 0.03	4 : 0.03	7 : 0.01	8 : 0.01	5 : 0.01	> : 0.01	
= : 0.21	g : 0.15	e : 0.08	c : 0.07	f : 0.07	d : 0.05	a : 0.05	4 : 0.05	] : 0.05	2 : 0.03	7 : 0.03	i : 0.03	8 : 0.01	G : 0.01	h : 0.01	5 : 0.01	> : 0.01	
= : 0.21	g : 0.15	e : 0.10	c : 0.07	] : 0.07	4 : 0.07	f : 0.07	2 : 0.03	7 : 0.03	i : 0.03	d : 0.03	8 : 0.01	: : 0.01	G : 0.01	h : 0.01	b : 0.01	> : 0.01	

#score	821.7904407750534
#seq	57
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF545FMX_NPM1_CDS_m3_run2.txt

#BEAR
c[bb[hhhhhhhh####bb[bbpppppppbb]bb55555h	chr2:232326226-232326502(-)$1	276	220	260	37.8054
ffff[accc!!ccc$$$$$cccpppppppccc55555ccc	chr12:104341071-104341309(+)$1	238	117	157	28.0361
c[bb[hhhhhhhh####bb[bbpppppppbb]bb55555h	chr2:232326150-232326374(-)$1	224	92	132	37.8054
a[ggggggga[bb!!ccc!!bbpppppppbb4444ccc22	chr11:618786-618990(-)$1	204	131	171	28.2977

#otherMatches

#Seq PSSM
ugaugaggaugacgaugacgaugaggaagaugGUAAGGAG	chr2:232326226-232326502(-)$1	276	220	260	37.8054
aagaagaagaaACAGCAAAGGUAUGGCAAAUCAAGAAUGU	chr12:104341071-104341309(+)$1	238	117	157	28.0361
ugaugaggaugacgaugacgaugaggaagaugGUAAGGAG	chr2:232326150-232326374(-)$1	224	92	132	37.8054
GUGGGGGCACAGCACAGACCCCAGAGCCAGGAACCUCUCA	chr11:618786-618990(-)$1	204	131	171	28.2977

#DB
(.((.((((((((....((.((.......)).)).....)	chr2:232326226-232326502(-)$1	1	220	260	37.8054
((((.((((..(((.....(((.......))).....)))	chr12:104341071-104341309(+)$1	1	117	157	28.0361
(.((.((((((((....((.((.......)).)).....)	chr2:232326150-232326374(-)$1	1	92	132	37.8054
(.((((((((.((..(((..((.......))....)))..	chr11:618786-618990(-)$1	1	131	171	28.2977

#PSSM
c : 0.50	f : 0.25	a : 0.25	
[ : 0.75	f : 0.25	
b : 0.50	f : 0.25	g : 0.25	
b : 0.50	f : 0.25	g : 0.25	
[ : 0.75	g : 0.25	
h : 0.50	a : 0.25	g : 0.25	
h : 0.50	c : 0.25	g : 0.25	
h : 0.50	c : 0.25	g : 0.25	
h : 0.50	c : 0.25	g : 0.25	
h : 0.50	! : 0.25	a : 0.25	
h : 0.50	! : 0.25	[ : 0.25	
h : 0.50	c : 0.25	b : 0.25	
h : 0.50	c : 0.25	b : 0.25	
# : 0.50	c : 0.25	! : 0.25	
# : 0.50	$ : 0.25	! : 0.25	
# : 0.50	$ : 0.25	c : 0.25	
# : 0.50	$ : 0.25	c : 0.25	
b : 0.50	$ : 0.25	c : 0.25	
b : 0.50	$ : 0.25	! : 0.25	
[ : 0.50	c : 0.25	! : 0.25	
b : 0.75	c : 0.25	
b : 0.75	c : 0.25	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
b : 0.75	c : 0.25	
b : 0.75	c : 0.25	
] : 0.50	c : 0.25	4 : 0.25	
b : 0.50	5 : 0.25	4 : 0.25	
b : 0.50	5 : 0.25	4 : 0.25	
5 : 0.75	4 : 0.25	
5 : 0.75	c : 0.25	
5 : 0.75	c : 0.25	
5 : 0.50	c : 0.50	
5 : 0.50	c : 0.25	2 : 0.25	
h : 0.50	c : 0.25	2 : 0.25	

#score	131.94481966722503
#seq	4
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_CDS_m3_run1.txt

#BEAR
DDDD}CCCHHHHHHHH?	chr17:57721630-57721899(+)$1	269	222	239	9.9376
C}DDDD}JJJJJJJJJJ	chr11:62300156-62300416(-)$1	260	226	243	12.5320
eDDDDBBHHHHHHHH{G	chr16:85838465-85838808(+)$1	343	28	45	9.9855
EEEEEBB{JJJJJJJJJ	chr17:4849841-4850089(-)$1	248	57	74	14.1865
FFFYYDDDDHHHHHHHH	chr12:123997696-123998056(-)$1	360	143	160	9.3982
EEEE}BBJJJJJJJJJJ	chr14:50235029-50235305(+)$1	276	242	259	13.8051
DDDD::::IIIIIIIII	chr16:74506148-74506403(-)$1	255	24	41	11.6477
E{BBMMMMIIIIIIIII	chrX:118602417-118602680(+)$1	263	84	101	10.8910
::::CCC{IIIIIIIII	chr3:41274968-41275211(+)$1	243	3	20	11.0964

#otherMatches

#Seq PSSM
GAAUGUGGGUUUUCCUU	chr17:57721630-57721899(+)$1	269	222	239	9.9376
UGUAGGAUCUCUAUGUC	chr11:62300156-62300416(-)$1	260	226	243	12.5320
ACUCUCAACUUACAUGG	chr16:85838465-85838808(+)$1	343	28	45	9.9855
GGUGAUCCGGGACUCAC	chr17:4849841-4850089(-)$1	248	57	74	14.1865
AGUAAAUGAGUGAGUGG	chr12:123997696-123998056(-)$1	360	143	160	9.3982
CCGCUGAGCGCAGCGGC	chr14:50235029-50235305(+)$1	276	242	259	13.8051
AGAGAAACUGCUCCUCC	chr16:74506148-74506403(-)$1	255	24	41	11.6477
CGCCAAGGACUUCCUGG	chrX:118602417-118602680(+)$1	263	84	101	10.8910
UCAAGAUGAGUAUGUGC	chr3:41274968-41275211(+)$1	243	3	20	11.0964

#DB
)))).))))))))))).	chr17:57721630-57721899(+)$1	1	222	239	9.9376
).)))).))))))))))	chr11:62300156-62300416(-)$1	1	226	243	12.5320
)((((((((((((((.(	chr16:85838465-85838808(+)$1	1	28	45	9.9855
(((((((.(((((((((	chr17:4849841-4850089(-)$1	1	57	74	14.1865
)))..))))((((((((	chr12:123997696-123998056(-)$1	1	143	160	9.3982
)))).))))))))))))	chr14:50235029-50235305(+)$1	1	242	259	13.8051
((((....(((((((((	chr16:74506148-74506403(-)$1	1	24	41	11.6477
(.((....(((((((((	chrX:118602417-118602680(+)$1	1	84	101	10.8910
....(((.(((((((((	chr3:41274968-41275211(+)$1	1	3	20	11.0964

#PSSM
E : 0.33	D : 0.22	C : 0.11	e : 0.11	F : 0.11	: : 0.11	
D : 0.33	E : 0.22	} : 0.11	F : 0.11	{ : 0.11	: : 0.11	
D : 0.44	E : 0.22	F : 0.11	B : 0.11	: : 0.11	
D : 0.44	E : 0.22	Y : 0.11	B : 0.11	: : 0.11	
} : 0.22	D : 0.22	E : 0.11	Y : 0.11	: : 0.11	M : 0.11	C : 0.11	
B : 0.33	C : 0.22	D : 0.22	: : 0.11	M : 0.11	
B : 0.33	C : 0.22	} : 0.11	D : 0.11	: : 0.11	M : 0.11	
J : 0.22	{ : 0.22	C : 0.11	H : 0.11	D : 0.11	: : 0.11	M : 0.11	
J : 0.33	I : 0.33	H : 0.22	D : 0.11	
H : 0.33	J : 0.33	I : 0.33	
H : 0.33	J : 0.33	I : 0.33	
H : 0.33	J : 0.33	I : 0.33	
H : 0.33	J : 0.33	I : 0.33	
H : 0.33	J : 0.33	I : 0.33	
H : 0.33	J : 0.33	I : 0.33	
J : 0.33	I : 0.33	H : 0.22	{ : 0.11	
J : 0.33	I : 0.33	? : 0.11	G : 0.11	H : 0.11	

#score	103.48039842498886
#seq	9
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_CDS_m1_run2.txt

#BEAR
ffffff"""bb[cccmmmmccc333bb22ffffff]	chr1:228329186-228329462(+)$1	276	184	220	11.8723
gggggg$$$$$eeeeemmmmeeeee4444ggggggg	chr11:63883792-63884116(-)$1	324	113	149	12.8538
======[a!!eeeeemmmmeeeee22a]========	chr7:100027501-100027786(+)$1	285	222	258	13.1262
ee"""eeeee!!ddddmmmmdddd]eeeee22eeee	chr7:1474056-1474374(-)$1	318	256	292	12.9677
ggggggg[ccc[cccooooooccc]ccc]ggggggg	chr17:7476917-7477196(+)$1	279	19	55	12.5010
cccdddd$$$$$ddddmmmmdddd22dddd]ccc:E	chr9:140260656-140261004(-)$1	348	97	133	11.7263
eeee[===========mmmm===========eeeee	chr1:155658019-155658304(-)$1	285	107	143	13.2179
ffff[eeeee"""cccmmmmccc333eeeeefffff	chr11:62285994-62286241(-)$1	247	59	95	12.8542
$$$$$bb[bb!!ddddmmmmdddd22bb]bb333ff	chr11:62300350-62300692(-)$1	342	155	191	12.7726
:ccc[============lll============]ccc	chr22:50873206-50873495(+)$1	289	167	203	11.3277
[bb[bb[a[cccddddmmmmdddd22ccc]a]bbbb	chr8:25315646-25315947(-)$1	301	179	215	12.9068
"dddd"""bb[eeeeemmmmeeeee]bb4444dddd	chr11:419624-419919(-)$1	295	181	217	11.9798
ffffff"""bb[cccmmmmccc333bb22ffffff]	chr1:228329267-228329572(+)$1	305	103	139	11.8723
f[bbcccccc!!ddddmmmmdddd22ccc22ccc22	chr19:2269626-2269861(+)$1	235	129	165	14.4999
fff!!ccc"""eeeeemmmmeeeee]ccc]ffffff	chr22:19431809-19432073(-)$1	264	170	206	12.7865
eeeee[ccc"""ddddmmmmdddd333ccc]eeeee	chr2:172379658-172379983(+)$1	325	105	141	15.2790
ddccc[ffffffddddmmmmdddd333ffffff]cc	chr19:41306991-41307298(+)$1	307	200	236	12.7192
"""ccc[ccc[dddd[ammmma]dddd]cccccc44	chr17:7476712-7476959(+)$1	247	42	78	11.2984
ee[dddd[bb[ddddooooooddddbb]dddd]eee	chr22:50018438-50018700(-)$1	262	80	116	10.7918
FFFFcccccc!!ddddmmmmdddd22ccc]ccceee	chr1:32827408-32827680(-)$1	272	139	175	13.6497
[ffffff"""ddddoooooodddd22ffffff]bb3	chr1:17751964-17752249(-)$1	285	16	52	11.7410
[bbeeeee[bb[ddddmmmmdddd]bb4444eeeee	chr16:31724662-31724956(+)$1	294	179	215	13.4722
dddccc"""bb"""bbmmmmbb333bb22ccc]ddd	chr19:49964767-49965078(+)$1	311	245	281	11.6907
ggggccc[ccc[cccccclllccc22ccc]cccccc	chr2:54197790-54198049(-)$1	259	161	197	11.4958
!!bb!!ccc####cccmmmmccc22ccc22bb]bb2	chr17:80789372-80789673(+)$1	301	160	196	12.3668
cc[ccc!!bb[eeeeellleeeee333bb22ccc33	chr11:294551-294813(+)$1	262	53	89	11.8366
eeeee!!dddd[ddddmmmmdddddddd22eeeee:	chr7:127669475-127669780(+)$1	305	246	282	11.5757
dccc####eeeee[bbmmmmbb]eeeee333ccc]d	chr4:76649854-76650118(+)$1	264	111	147	10.9371
========gggggggnnnnnggggggg333======	chr16:89367077-89367339(-)$1	262	165	201	11.5373
eeeee!!dddd[ddddmmmmdddddddd22eeeee2	chr7:127669706-127670025(+)$1	319	15	51	12.3300
cc[ggggggg!!ddddlllddddggggggg]ccc]b	chr8:145693794-145694067(+)$1	273	53	89	12.1787
:eeeee"""gggggggmmmmggggggg4444eeeee	chr11:18424384-18424652(+)$1	268	82	118	11.8035
b[==========[cccmmmmccc]==========bb	chr7:44156722-44157038(-)$1	316	39	75	13.3147
dddd[dddd####cccmmmmccc333dddd]dddd:	chr11:62284836-62285159(-)$1	323	121	157	11.8486
))ggggggg####a[ammmma]a333ggggggg22d	chr3:49050061-49050364(+)$1	303	138	174	12.1819
====[ccc[a!!bb!!ammmma22bba]ccc=====	chr9:101558485-101558795(-)$1	310	63	99	11.0308
gggggg"""a!!ddddmmmmdddd22a22ggggggg	chr5:179248427-179248714(+)$1	287	185	221	16.3918
cccc[ccc[bb!!ccclllccc333bb]ccc]cccG	chr5:138629678-138629996(+)$1	318	223	259	11.6023
=======####ddddnnnnndddd]===========	chr6:86322450-86322733(-)$1	283	72	108	13.7926
d[dddd!!bb!!ddddmmmmdddd22bb333dddd]	chr2:178082332-178082600(+)$1	268	210	246	15.1388
f[a[cccccc[ccc[ammmmaccc]ccc]cccafff	chr19:798414-798725(+)$1	311	138	174	12.9335
!dddd!!eeeeeddddmmmmdddd]eeeee333ddd	chr19:10221604-10221954(+)$1	350	155	191	12.4713
e[dddd!!dddd[cccmmmmccc333dddd22dddd	chr11:62300888-62301187(-)$1	299	150	186	12.2234
!ccc[ccc"""ddddnnnnndddd333ccc333ccc	chr2:132044786-132045039(+)$1	253	162	198	13.9078
ff[ccc####eeeeennnnneeeee4444ccc]fff	chr1:36348901-36349184(+)$1	283	143	179	11.2768
eeffffff[a[a[cccmmmmccc]a]a]ffffff22	chr14:50778580-50779004(-)$1	424	44	80	12.0450
dddd[a[bb!!ddddnnnnndddd22bb]adddd]d	chr20:34241191-34241540(-)$1	349	268	304	11.4694
ggggggdddd!!cccooooooccc22dddd]ggggg	chr3:186503640-186503940(+)$1	300	190	226	12.2729
[ffffff!!dddd[bbmmmmbb]dddd333ffffff	chr13:114144504-114144848(-)$1	344	17	53	10.9359
eee[dddd[bb[cccooooooccc22bb]dddd]ee	chrM:14226-14448(-)$1	222	77	113	11.5381
=====[eeeee[ddddmmmmdddd4444eeeee]==	chr11:82879789-82880150(+)$1	361	283	319	13.9268
g!!a[ccc[cccddddnnnnndddd333ccc]ccca	chr19:2270332-2270569(+)$1	237	92	128	12.0924
gggggggccceeeeellleeeee333ccc]gggggg	chr10:103546031-103546355(-)$1	324	1	37	10.9211
eeeeeeee[a[a[cccmmmmccca]a]eeeee]eee	chr9:139565298-139565563(+)$1	265	51	87	12.3153
ff"""bb####ddddnnnnndddd22bb333fffff	chr16:725962-726262(+)$1	300	31	67	13.1797
ggg"""bbccc[ddddmmmmddddccc]bb333ggg	chr19:10406896-10407146(+)$1	250	89	125	13.0702
!a!!bb"""gggggggmmmmggggggg4444bb22a	chr11:62284264-62284510(-)$1	246	112	148	11.7251
e!!ddddccc!!ddddllldddd333ccc]dddd]e	chr22:19711795-19712083(+)$1	288	33	69	13.2317
:eeeee"""gggggggmmmmggggggg4444eeeee	chr11:18424452-18424660(+)$1	208	14	50	11.8035
iiiiiieeeee[ddddmmmmddddeeeee22iiiii	chr1:171750759-171751188(+)$1	429	134	170	12.7349
eee[dddd[bb[cccooooooccc22bb]dddd]ee	chrM:14204-14426(-)$1	222	55	91	11.5381

#otherMatches

#Seq PSSM
CAGCAGGGAGUGCCUUUCCAGGAAAGCGGCUGCUGG	chr1:228329186-228329462(+)$1	276	184	220	11.8723
CAGGUAGAGGGUGGUGGCAUCAUCAGGGAUAUCUGC	chr11:63883792-63884116(-)$1	324	113	149	12.8538
GCGGCCCCACGGUGCCACCGCACCAAGAGGCCGCCU	chr7:100027501-100027786(+)$1	285	222	258	13.1262
CCGGACCCGGCAUUCGGACUUGGACUCGGGAAGGGC	chr7:1474056-1474374(-)$1	318	256	292	12.9677
GCCGCCGGGUGGUCGAGGGAGCGAGCACAUGGUGGC	chr17:7476917-7477196(+)$1	279	19	55	12.5010
GCAUCCUGGGAGCCCUGGUUAGGGAAGGGAGUGUAG	chr9:140260656-140261004(-)$1	348	97	133	11.7263
GGAGGUUGGGGGUGUCGCUAGGCGCCCUUAGCUCCC	chr1:155658019-155658304(-)$1	285	107	143	13.2179
UUUCCAUGCCCAAGAUCGGCAUCCCAGGUGUGAAAA	chr11:62285994-62286241(-)$1	247	59	95	12.8542
UUGAUGUGACACUGCCUACAGGUGAAGUGACUGUUC	chr11:62300350-62300692(-)$1	342	155	191	12.7726
GAUGGUGCCUGUUGCUUUCAGGGCAGCGGGUGGCAU	chr22:50873206-50873495(+)$1	289	167	203	11.3277
AGCGCGAUGAGGCGGGUGACCCUGUUCCUGAACGGC	chr8:25315646-25315947(-)$1	301	179	215	12.9068
CUGGUGCAGGGACCUGGCUGCAGGUGCUGGAGACCA	chr11:419624-419919(-)$1	295	181	217	11.9798
CAGCAGGGAGUGCCUUUCCAGGAAAGCGGCUGCUGG	chr1:228329267-228329572(+)$1	305	103	139	11.8723
CCCCCGUCCGAAGCUUCCAGAAGCGCCGGCCGCGCA	chr19:2269626-2269861(+)$1	235	129	165	14.4999
GUGAGAGCGAGCGGGCACGAGUCCGGGCUGCACGGA	chr22:19431809-19432073(-)$1	264	170	206	12.7865
GCGGGGAAAAGAUUGCCGGAGCGAGAAUUUGCCCGU	chr2:172379658-172379983(+)$1	325	105	141	15.2790
CAGAUUGCCUGGGUGGAAGGCCAUGAACCAGGCUGU	chr19:41306991-41307298(+)$1	307	200	236	12.7192
CCAGGAGCCCACCCGGCGCCGGGCGGGCGGGUCCAU	chr17:7476712-7476959(+)$1	247	42	78	11.2984
UGGGGGCUGGUGGCAGCUUUGUGCUCCUGUCUGCAG	chr22:50018438-50018700(-)$1	262	80	116	10.7918
gggcgggcgcgaggcggcggcgcccggcgACCCGGG	chr1:32827408-32827680(-)$1	272	139	175	13.6497
GAGGUCACCCCACCACCCCAGGUGUCUGAUCUGCAU	chr1:17751964-17752249(-)$1	285	16	52	11.7410
UCUGGGCCCUGAGUCCCCGCGGACGCAACUCGGCCC	chr16:31724662-31724956(+)$1	294	179	215	13.4722
UCCCAGCCUGGAAUCCGGAAGGUGGCCUUCUGCGGA	chr19:49964767-49965078(+)$1	311	245	281	11.6907
cccccggagccgggcgggcgucccgagccgggcccg	chr2:54197790-54198049(-)$1	259	161	197	11.4958
AGGCGAGCUCCCAGCCAGCAGGUAAGGCGAGUAGAU	chr17:80789372-80789673(+)$1	301	160	196	12.3668
CCCGAAGCUGCCUGGAAGUUCCAGCUCCGAGUUCCC	chr11:294551-294813(+)$1	262	53	89	11.8366
GGUGGAAUUGGUGGGUAUAUACUCUCGAAGCCACCA	chr7:127669475-127669780(+)$1	305	246	282	11.5757
UCCGGAGGGGCCGGUAAACCUGGUGGCUGAACGGCA	chr4:76649854-76650118(+)$1	264	111	147	10.9371
CCAGGCACAUGCUGGUUCCUUCAGCGUUAGGUGCUU	chr16:89367077-89367339(-)$1	262	165	201	11.5373
GGUGGAAUUGGUGGGUAUAUACUCUCGAAGCCACCA	chr7:127669706-127670025(+)$1	319	15	51	12.3300
GGGGCUUAUCUGAGGCAGGGCCUGGUAAGUGCCUGU	chr8:145693794-145694067(+)$1	273	53	89	12.1787
UCAGCCCGAUUCCGUUACCUAAUGGGGGAAAGGCUG	chr11:18424384-18424652(+)$1	268	82	118	11.8035
GUGACUCCAGGAAGCAGGCAUGCAUCCUGGAGUCCU	chr7:44156722-44157038(-)$1	316	39	75	13.3147
UCAUUUCUCAGGACCAAAGGUGGAAGGAGGUGUGAA	chr11:62284836-62285159(-)$1	323	121	157	11.8486
CAAUGGGGAAGGUCGUGUCAAGGUUGUCCCCAUCAA	chr3:49050061-49050364(+)$1	303	138	174	12.1819
GCGCGCGUGUGACCAGGGCGACAcggagacggcgcg	chr9:101558485-101558795(-)$1	310	63	99	11.0308
GCGGGUAAACAAGCGCGGGGGUGCGGGGGACUCGCG	chr5:179248427-179248714(+)$1	287	185	221	16.3918
CGAGGCCUGAGGGACAGACUGUACACUGGGGGCUUG	chr5:138629678-138629996(+)$1	318	223	259	11.6023
UCCUUUUGUUACCUGGCUAGCAGGGAAAAGGGGUCG	chr6:86322450-86322733(-)$1	283	72	108	13.7926
GGUUACAAUGAAGGAGGAAAUUUUGGCGGUGGUAAG	chr2:178082332-178082600(+)$1	268	210	246	15.1388
CUGCAGACGGCGAGACGAGGGCUCCCCGCUCUCGGA	chr19:798414-798725(+)$1	311	138	174	12.9335
GGCCAGGCGGGGGCCCAGAGGGGCUUCCCGGGAUGG	chr19:10221604-10221954(+)$1	350	155	191	12.4713
UGGGGGUAGGGCAGUAGAGGUACAGGGCCCAUCUCU	chr11:62300888-62301187(-)$1	299	150	186	12.2234
UUGUGUGGAAUGAAACCUCCUUUCCUCCCAGAAGCA	chr2:132044786-132045039(+)$1	253	162	198	13.9078
CAGGUAAGGGUCCCCAGGAGGGGGAACGGUGCAUGC	chr1:36348901-36349184(+)$1	283	143	179	11.2768
CGUGAGGGGCGGGGCUAAAGAGCGCGGGUCCUCGGC	chr14:50778580-50779004(-)$1	424	44	80	12.0450
CCGGUGUGGGACUGCCCAGUGCAGGACUUCCCGGUG	chr20:34241191-34241540(-)$1	349	268	304	11.4694
AGAUACCUUUGUAAGUAUUGUCUUUAAGAGAGUAUU	chr3:186503640-186503940(+)$1	300	190	226	12.2729
GCCCGCGAGCCGGAGCGGUGGCGUCGGAGGCGCGGG	chr13:114144504-114144848(-)$1	344	17	53	10.9359
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUG	chrM:14226-14448(-)$1	222	77	113	11.5381
UGGGUGGACUUAGAUUUGAUAAUCCCCGAGGUCAGC	chr11:82879789-82880150(+)$1	361	283	319	13.9268
CCUGAGCGAGUCGGUCUGGAUGGCCCGGGACGCGCC	chr19:2270332-2270569(+)$1	237	92	128	12.0924
UUAUUUCUAGGCUCCCGGGGAGCUUUCUGUGAAGUG	chr10:103546031-103546355(-)$1	324	1	37	10.9211
GUGUGGGUGGGGAGCCGGCCGGCCGUGACCCAGCGC	chr9:139565298-139565563(+)$1	265	51	87	12.3153
CUGGACCAGAGCUCCUGGCUGGAGAagggagagucg	chr16:725962-726262(+)$1	300	31	67	13.1797
CACCCUCCGCGAGGGUCUCCACCCCGCAGGUCCGUG	chr19:10406896-10407146(+)$1	250	89	125	13.0702
AAGAGCAAAGGUCAUUAUGAGGUGACUGGGAGCGAU	chr11:62284264-62284510(-)$1	246	112	148	11.7251
CUUGCGCUGCUGGGCCUUGGGCUGCUGCACGCGUUG	chr22:19711795-19712083(+)$1	288	33	69	13.2317
UCAGCCCGAUUCCGUUACCUAAUGGGGGAAAGGCUG	chr11:18424452-18424660(+)$1	208	14	50	11.8035
AAGCGUGUGUGAGAUUCAGUGGUCCAUGCGUGCGUU	chr1:171750759-171751188(+)$1	429	134	170	12.7349
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUG	chrM:14204-14426(-)$1	222	55	91	11.5381

#DB
((((((...((.(((....)))...))..)))))).	chr1:228329186-228329462(+)$1	1	184	220	11.8723
((((((.....(((((....)))))....)))))))	chr11:63883792-63884116(-)$1	1	113	149	12.8538
((((((.(..(((((....)))))..).))))))))	chr7:100027501-100027786(+)$1	1	222	258	13.1262
((...(((((..((((....)))).)))))..))))	chr7:1474056-1474374(-)$1	1	256	292	12.9677
(((((((.(((.(((......))).))).)))))))	chr17:7476917-7477196(+)$1	1	19	55	12.5010
(((((((.....((((....))))..)))).))).)	chr9:140260656-140261004(-)$1	1	97	133	11.7263
((((.(((((((((((....))))))))))))))))	chr1:155658019-155658304(-)$1	1	107	143	13.2179
((((.(((((...(((....)))...))))))))))	chr11:62285994-62286241(-)$1	1	59	95	12.8542
.....((.((..((((....))))..)).))...))	chr11:62300350-62300692(-)$1	1	155	191	12.7726
.(((.((((((((((((...)))))))))))).)))	chr22:50873206-50873495(+)$1	1	167	203	11.3277
.((.((.(.(((((((....))))..))).).))))	chr8:25315646-25315947(-)$1	1	179	215	12.9068
.((((...((.(((((....))))).))....))))	chr11:419624-419919(-)$1	1	181	217	11.9798
((((((...((.(((....)))...))..)))))).	chr1:228329267-228329572(+)$1	1	103	139	11.8723
(.((((((((..((((....))))..)))..)))..	chr19:2269626-2269861(+)$1	1	129	165	14.4999
(((..(((...(((((....))))).))).))))))	chr22:19431809-19432073(-)$1	1	170	206	12.7865
(((((.(((...((((....))))...))).)))))	chr2:172379658-172379983(+)$1	1	105	141	15.2790
(((((.((((((((((....))))...)))))).))	chr19:41306991-41307298(+)$1	1	200	236	12.7192
...(((.(((.((((.(....).)))).))))))..	chr17:7476712-7476959(+)$1	1	42	78	11.2984
((.((((.((.((((......)))))).)))).)))	chr22:50018438-50018700(-)$1	1	80	116	10.7918
((((((((((..((((....))))..))).)))(((	chr1:32827408-32827680(-)$1	1	139	175	13.6497
.((((((...((((......))))..)))))).)).	chr1:17751964-17752249(-)$1	1	16	52	11.7410
.(((((((.((.((((....)))).))....)))))	chr16:31724662-31724956(+)$1	1	179	215	13.4722
((((((...((...((....))...))..))).)))	chr19:49964767-49965078(+)$1	1	245	281	11.6907
(((((((.(((.((((((...)))..))).))))))	chr2:54197790-54198049(-)$1	1	161	197	11.4958
..((..(((....(((....)))..)))..)).)).	chr17:80789372-80789673(+)$1	1	160	196	12.3668
((.(((..((.(((((...)))))...))..)))..	chr11:294551-294813(+)$1	1	53	89	11.8366
(((((..((((.((((....))))))))..))))).	chr7:127669475-127669780(+)$1	1	246	282	11.5757
((((....(((((.((....)).)))))...))).)	chr4:76649854-76650118(+)$1	1	111	147	10.9371
(((((((((((((((.....)))))))...))))))	chr16:89367077-89367339(-)$1	1	165	201	11.5373
(((((..((((.((((....))))))))..))))).	chr7:127669706-127670025(+)$1	1	15	51	12.3300
((.(((((((..((((...))))))))))).))).)	chr8:145693794-145694067(+)$1	1	53	89	12.1787
.(((((...(((((((....)))))))....)))))	chr11:18424384-18424652(+)$1	1	82	118	11.8035
(.((((((((((.(((....))).))))))))))))	chr7:44156722-44157038(-)$1	1	39	75	13.3147
((((.((((....(((....)))...)))).)))).	chr11:62284836-62285159(-)$1	1	121	157	11.8486
..(((((((....(.(....).)...)))))))..)	chr3:49050061-49050364(+)$1	1	138	174	12.1819
((((.(((.(..((..(....)..))).))))))))	chr9:101558485-101558795(-)$1	1	63	99	11.0308
((((((...(..((((....))))..)..)))))))	chr5:179248427-179248714(+)$1	1	185	221	16.3918
)(((.(((.((..(((...)))...)).))).))))	chr5:138629678-138629996(+)$1	1	223	259	11.6023
(((((((....((((.....)))).)))))))))))	chr6:86322450-86322733(-)$1	1	72	108	13.7926
(.((((..((..((((....))))..))...)))).	chr2:178082332-178082600(+)$1	1	210	246	15.1388
(.(.((((((.(((.(....)))).))).)))))))	chr19:798414-798725(+)$1	1	138	174	12.9335
.((((..(((((((((....)))).)))))...)))	chr19:10221604-10221954(+)$1	1	155	191	12.4713
(.((((..((((.(((....)))...))))..))))	chr11:62300888-62301187(-)$1	1	150	186	12.2234
.(((.(((...((((.....))))...)))...)))	chr2:132044786-132045039(+)$1	1	162	198	13.9078
((.(((....(((((.....)))))....))).)))	chr1:36348901-36349184(+)$1	1	143	179	11.2768
((((((((.(.(.(((....))).).).))))))..	chr14:50778580-50779004(-)$1	1	44	80	12.0450
((((.(.((..((((.....))))..)).))))).)	chr20:34241191-34241540(-)$1	1	268	304	11.4694
((((((((((..(((......)))..)))).)))))	chr3:186503640-186503940(+)$1	1	190	226	12.2729
.((((((..((((.((....)).))))...))))))	chr13:114144504-114144848(-)$1	1	17	53	10.9359
(((.((((.((.(((......)))..)).)))).))	chrM:14226-14448(-)$1	1	77	113	11.5381
(((((.(((((.((((....))))....))))).))	chr11:82879789-82880150(+)$1	1	283	319	13.9268
(..(.(((.(((((((.....))))...))).))))	chr19:2270332-2270569(+)$1	1	92	128	12.0924
(((((((((((((((...)))))...))).))))))	chr10:103546031-103546355(-)$1	1	1	37	10.9211
((((((((.(.(.(((....)))).).))))).)))	chr9:139565298-139565563(+)$1	1	51	87	12.3153
((...((....((((.....))))..))...)))))	chr16:725962-726262(+)$1	1	31	67	13.1797
(((...(((((.((((....))))))).))...)))	chr19:10406896-10407146(+)$1	1	89	125	13.0702
.(..((...(((((((....)))))))....))..)	chr11:62284264-62284510(-)$1	1	112	148	11.7251
(..(((((((..((((...))))...))).)))).)	chr22:19711795-19712083(+)$1	1	33	69	13.2317
.(((((...(((((((....)))))))....)))))	chr11:18424452-18424660(+)$1	1	14	50	11.8035
(((((((((((.((((....)))))))))..)))))	chr1:171750759-171751188(+)$1	1	134	170	12.7349
(((.((((.((.(((......)))..)).)))).))	chrM:14204-14426(-)$1	1	55	91	11.5381

#PSSM
e : 0.19	f : 0.13	g : 0.13	d : 0.09	= : 0.08	c : 0.06	[ : 0.06	! : 0.06	: : 0.04	" : 0.03	$ : 0.01	F : 0.01	b : 0.01	) : 0.01	i : 0.01	
e : 0.19	f : 0.13	g : 0.11	c : 0.11	d : 0.09	= : 0.08	[ : 0.08	! : 0.04	b : 0.03	$ : 0.01	" : 0.01	F : 0.01	) : 0.01	a : 0.01	i : 0.01	
e : 0.14	g : 0.13	f : 0.11	d : 0.11	= : 0.09	c : 0.09	b : 0.06	[ : 0.06	" : 0.04	! : 0.04	$ : 0.01	F : 0.01	a : 0.01	i : 0.01	
d : 0.14	c : 0.14	g : 0.13	e : 0.13	f : 0.09	= : 0.09	[ : 0.06	" : 0.04	b : 0.03	! : 0.03	$ : 0.01	F : 0.01	a : 0.01	i : 0.01	
d : 0.14	[ : 0.14	c : 0.14	g : 0.11	e : 0.11	f : 0.08	= : 0.08	" : 0.04	b : 0.03	! : 0.03	$ : 0.01	# : 0.01	i : 0.01	
c : 0.21	d : 0.13	g : 0.11	= : 0.09	e : 0.09	f : 0.08	b : 0.06	! : 0.06	[ : 0.04	" : 0.03	# : 0.01	a : 0.01	i : 0.01	
c : 0.18	" : 0.13	d : 0.11	e : 0.09	! : 0.09	= : 0.08	[ : 0.06	g : 0.06	f : 0.06	b : 0.04	# : 0.03	$ : 0.01	
c : 0.21	" : 0.14	e : 0.11	d : 0.09	[ : 0.06	= : 0.06	! : 0.06	# : 0.06	$ : 0.03	a : 0.03	f : 0.03	g : 0.03	b : 0.03	
c : 0.18	" : 0.16	[ : 0.14	e : 0.09	b : 0.09	d : 0.08	= : 0.04	g : 0.04	# : 0.04	$ : 0.03	! : 0.03	f : 0.01	
b : 0.19	c : 0.18	e : 0.09	# : 0.09	d : 0.08	g : 0.08	" : 0.06	a : 0.06	= : 0.04	$ : 0.03	! : 0.03	f : 0.01	
! : 0.18	b : 0.11	e : 0.11	[ : 0.11	c : 0.08	d : 0.08	# : 0.08	" : 0.06	g : 0.06	= : 0.04	$ : 0.03	f : 0.01	
[ : 0.19	! : 0.18	e : 0.14	d : 0.14	g : 0.06	= : 0.04	" : 0.04	c : 0.04	# : 0.04	a : 0.03	$ : 0.01	f : 0.01	
d : 0.45	c : 0.13	e : 0.13	g : 0.06	[ : 0.06	# : 0.04	= : 0.03	" : 0.03	b : 0.01	! : 0.01	
d : 0.44	c : 0.26	e : 0.11	g : 0.06	= : 0.03	[ : 0.03	" : 0.01	a : 0.01	b : 0.01	
d : 0.42	c : 0.24	e : 0.11	g : 0.06	b : 0.04	= : 0.03	[ : 0.03	o : 0.01	! : 0.01	
d : 0.32	c : 0.14	o : 0.09	n : 0.09	e : 0.06	m : 0.04	b : 0.04	g : 0.04	= : 0.03	a : 0.03	[ : 0.01	! : 0.01	l : 0.01	
m : 0.63	n : 0.11	o : 0.09	l : 0.08	a : 0.03	= : 0.01	c : 0.01	
m : 0.67	n : 0.11	o : 0.09	l : 0.09	c : 0.01	
m : 0.67	n : 0.11	o : 0.09	l : 0.09	e : 0.01	
m : 0.62	n : 0.11	o : 0.09	c : 0.04	e : 0.04	l : 0.03	d : 0.03	
d : 0.39	c : 0.16	e : 0.11	o : 0.08	g : 0.06	b : 0.04	= : 0.03	m : 0.03	a : 0.03	l : 0.01	n : 0.01	
d : 0.42	c : 0.26	e : 0.11	g : 0.06	b : 0.04	= : 0.03	a : 0.03	] : 0.01	
d : 0.42	c : 0.21	e : 0.11	3 : 0.06	g : 0.06	] : 0.04	= : 0.03	a : 0.01	2 : 0.01	
d : 0.42	3 : 0.16	e : 0.11	c : 0.09	g : 0.08	= : 0.03	2 : 0.03	] : 0.03	a : 0.01	
2 : 0.26	3 : 0.22	] : 0.11	e : 0.09	d : 0.09	g : 0.08	= : 0.04	b : 0.01	a : 0.01	4 : 0.01	c : 0.01	
2 : 0.24	3 : 0.18	b : 0.11	g : 0.08	e : 0.06	c : 0.06	= : 0.06	d : 0.06	4 : 0.04	] : 0.04	a : 0.01	
b : 0.21	c : 0.18	d : 0.13	g : 0.09	e : 0.08	3 : 0.08	a : 0.06	= : 0.06	4 : 0.04	f : 0.01	] : 0.01	
c : 0.19	b : 0.13	4 : 0.11	] : 0.11	e : 0.09	d : 0.09	2 : 0.06	= : 0.06	3 : 0.04	f : 0.03	g : 0.03	
c : 0.21	2 : 0.11	4 : 0.11	e : 0.09	] : 0.09	= : 0.08	d : 0.08	3 : 0.08	f : 0.04	b : 0.03	g : 0.03	
c : 0.14	d : 0.11	] : 0.09	2 : 0.09	f : 0.08	g : 0.08	= : 0.08	e : 0.08	4 : 0.08	3 : 0.08	b : 0.03	a : 0.01	
c : 0.14	f : 0.11	= : 0.09	3 : 0.09	g : 0.08	2 : 0.08	] : 0.08	e : 0.08	4 : 0.08	d : 0.08	b : 0.03	a : 0.01	
c : 0.18	f : 0.14	e : 0.14	d : 0.11	g : 0.09	= : 0.09	3 : 0.06	] : 0.04	2 : 0.03	b : 0.03	4 : 0.01	i : 0.01	
c : 0.16	e : 0.14	f : 0.13	d : 0.13	] : 0.11	g : 0.09	= : 0.08	3 : 0.06	b : 0.03	a : 0.01	i : 0.01	
e : 0.18	c : 0.18	f : 0.14	d : 0.13	g : 0.09	= : 0.08	] : 0.06	b : 0.04	2 : 0.03	3 : 0.01	i : 0.01	
e : 0.21	f : 0.14	g : 0.09	c : 0.09	d : 0.09	= : 0.08	b : 0.06	2 : 0.06	] : 0.06	: : 0.01	4 : 0.01	3 : 0.01	i : 0.01	
e : 0.19	f : 0.11	d : 0.11	g : 0.09	= : 0.08	c : 0.06	2 : 0.06	] : 0.04	b : 0.04	3 : 0.03	: : 0.03	a : 0.03	E : 0.01	4 : 0.01	G : 0.01	i : 0.01	

#score	758.8857220827606
#seq	61
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_transcript_m1_run1.txt

#BEAR
[iiiiiiiii####cccooooooccc333iiiiiiiii]d	chr14:70238181-70238423(+)$1	242	166	206	19.3495
=====$$$$$ccc!!cccmmmmccc22ccc333=======	chr16:204215-204475(+)$1	260	195	235	15.2949
ff"""dddd$$$$$cccooooooccc4444dddd22ffff	chr8:91269546-91269863(+)$1	317	171	211	14.2304
B===========[cccqqqqqqqqccc]===========H	chr8:58118255-58118530(+)$1	275	206	246	12.8542
============[eeeee[ammmma]eeeee]========	chr3:197677706-197677937(+)$1	231	124	164	14.2849
###ggggggg[ddddssssssssssdddd333ggggggge	chr6:75947415-75947656(-)$1	241	191	231	11.6889
cc[hhhhhhhh[bbcccooooooccc]bb]hhhhhhhhcc	chr16:89627017-89627221(+)$1	204	29	69	13.0344
===[bb[dddd[bbrrrrrrrrrbb]dddd]bb]======	chr11:118279750-118279997(+)$1	247	87	127	13.1055
==========####cccrrrrrrrrrccc22=========	chr2:98264508-98264744(+)$1	236	118	158	16.5220
ee[ccc[bbdddd!!bboooooobb]dddd22bb]ccc]e	chr6:31698634-31698853(-)$1	219	117	157	15.1932
ccc[a[a[bb####bb[bbmmmmbb]bb333bb]a]a]cc	chr2:97560070-97560322(-)$1	252	117	157	12.3956
============eeeeeqqqqqqqqeeeee22========	chr7:54819929-54820189(-)$1	260	145	185	12.9799
iiii####bb[ccccccooooooccc]ccc]bb333iiii	chr6:31694740-31694991(-)$1	251	99	139	17.1303
a[ccc"""==========lll==========4444ccc]a	chr1:28564377-28564617(+)$1	240	112	152	15.0847
eee[ccc[ccc[a!!ccc[ammmma]ccc22accc]ccc]	chr7:22862286-22862557(-)$1	271	225	265	13.7608
[ffffff[ccc[a"""ccclllccc4444a]ccc]fffff	chr2:55459723-55459945(+)$1	222	58	98	13.3368
ccc!!bb!!dddd[cccoooooocccdddd22bb22ccc7	chr1:246417163-246417427(-)$1	264	183	223	15.0793
ggggg!!dddd[a[cccnnnnnccc22a]dddd333gggg	chr3:53259588-53259952(-)$1	364	71	111	14.2136
iiiiiiii[affffff[allla]ffffff4444a]iiiii	chr14:50052902-50053127(-)$1	225	142	182	13.0863
[ccc[ccc####gggggggmmmmggggggg22cccccc]d	chr8:125559203-125559455(+)$1	252	181	221	12.1077
!==========ccc[bbnnnnnbbccc22==========]	chr16:56717812-56718084(+)$1	272	128	168	15.3496
###eeeee[a[iiiiiiiiillliiiiiiiii22a]eeee	chr11:62296868-62297121(-)$1	253	88	128	11.9011
ggggg[dddd[bb!!bboooooobb22bb]ddddgggggg	chrX:77160588-77160875(+)$1	287	77	117	14.9334
[iiiiiiiii####cccooooooccc333iiiiiiiii]d	chr14:70238223-70238472(+)$1	249	124	164	19.3495
g[a[ccc[dddddddd[aooooooa]dddd]dddd]ccc]	chr11:5289642-5289871(-)$1	229	48	88	15.1498
"""=========="""aooooooa333==========ddd	chr1:116947129-116947436(+)$1	307	266	306	19.2144
iiiiiiiiccc"""cccooooooccc333ccc>>>>>>>>	chr6:170844135-170844411(-)$1	276	149	189	15.9450
ee[a[a!!eeeee[cccnnnnnccceeeee22a]a]eeee	chr16:1749181-1749427(+)$1	246	47	87	12.6175
d[ccc[ccc[bb!!cccoooooocccbbccc]ccc]dddd	chr15:79165205-79165490(+)$1	285	15	55	15.2069
####iiiiiiiii[cccooooooccc]iiiiiiiii22dd	chr19:44111533-44111822(-)$1	289	16	56	17.4508
a!!gggggggccc!!ammmma22ccc]ggggggg333a]d	chr2:47387818-47388044(-)$1	226	132	172	12.2435
dddccc[dddd[bb[aooooooabb]ddddccc]ddddee	chr19:58898538-58898791(+)$1	253	133	173	13.0264
============[eeeee[ammmma]eeeee]========	chr3:197677737-197677950(+)$1	213	93	133	14.2849
"============wwwwwwwwwwwwww============2	chr11:62300894-62301151(-)$1	257	50	90	13.7623
=============!!bboooooobb]=============:	chr7:56169257-56169498(-)$1	241	184	224	18.9657
e[a[ccc[dddddddd[aooooooa]dddd]dddd]ccc]	chr11:5289611-5289827(-)$1	216	4	44	14.9831
g[a[ccc[dddddddd[aooooooa]dddd]dddd]ccc]	chr11:5289627-5289839(-)$1	212	16	56	15.1498
bggggggg"""bb!!cccmmmmccc22bb22gggggggcc	chr9:139745231-139745501(+)$1	270	45	85	13.3397
cc===========[ddddbblllbb]dddd22========	chr19:40330970-40331256(-)$1	286	233	273	15.3243
=====$$$$$ccc"""bbnnnnnbb333ccc4444=====	chr7:100276510-100276822(+)$1	312	26	66	14.6905
[bb!!a[dddd[bb[bboooooobb]bb]dddd]abbbbe	chr17:79991706-79991976(+)$1	270	38	78	13.3188
cccdddd[eeeee[cccooooooccc22eeeee]dddd]c	chr1:8923234-8923464(-)$1	230	165	205	13.6427
gggggg####dddd[bboooooobbdddd22ggggggg::	chr1:173836066-173836282(-)$1	216	106	146	13.7819
ccc"""ccc!!ddddcccmmmmccc]dddd22ccccccab	chr10:79793533-79793763(+)$1	230	135	175	12.7715
!!bbhhhhhhhh"""bboooooobb]hhhhhhhh]bb333	chr11:5289707-5289926(-)$1	219	131	171	12.9999
ggggggga[ccc[ggggggglllgggggggccc]a]gggg	chrX:153626620-153626826(+)$1	206	74	114	12.7398
eeeee[cccccc!!cccooooooccc4444ccc333ccc]	chr1:8922863-8923094(-)$1	231	35	75	16.8883
$$gggggggeeeeecccooooooccc4444eeeee]gggg	chr16:30081228-30081450(+)$1	222	152	192	15.5151

#otherMatches

#Seq PSSM
GUUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAAGC	chr14:70238181-70238423(+)$1	242	166	206	19.3495
GGGACCCCCAGGACAGGCUGCGGCCCCUCCCCCGUCCUGG	chr16:204215-204475(+)$1	260	195	235	15.2949
uccaacaaaacaagacaaaugaauguaauauuugcagacu	chr8:91269546-91269863(+)$1	317	171	211	14.2304
AGCAGGCCCGUGagcggcgacagacgcguaugggccugug	chr8:58118255-58118530(+)$1	275	206	246	12.8542
AAGGAACUAUGUCUGGAAGGUACGCGUUUUAAAUAUAGUU	chr3:197677706-197677937(+)$1	231	124	164	14.2849
ACUUUUGGUCAGCCUUGUAAAUCUUAGGUAAGGAUCAAAG	chr6:75947415-75947656(-)$1	241	191	231	11.6889
GCCGGCCCUGCUAUCAUCCCAGAGUGCAUUGCGGGGCCGC	chr16:89627017-89627221(+)$1	204	29	69	13.0344
UAUUUGAUUUAUUAUUUGAGUGUUGUUGGACCAUGUGUGA	chr11:118279750-118279997(+)$1	247	87	127	13.1055
ACUAGCCAUUGCAUUGGCUCCUUCUCCCAUAGAUGGCUGG	chr2:98264508-98264744(+)$1	236	118	158	16.5220
CCGGGGAGUGCAUCGGUACUUGAGCAAUGCCUACGCCCGG	chr6:31698634-31698853(-)$1	219	117	157	15.1932
guggagggggugaguagguguggaugugggucugugugua	chr2:97560070-97560322(-)$1	252	117	157	12.3956
GAAACUCACAGAAUACAAAUUUGCCUGUAUGUUUUGUGGG	chr7:54819929-54820189(-)$1	260	145	185	12.9799
AGGGGAGAGUGUAGGGAAAAGGAUCCACUGGGUGAAUCCU	chr6:31694740-31694991(-)$1	251	99	139	17.1303
GUGCACACCGUGUGCCAUAGAAUGGCACAUGUCAUUGCCC	chr1:28564377-28564617(+)$1	240	112	152	15.0847
AUUCGCUGGGGCUUUAUCCCUCUUGUGAUUUACCUGGGUC	chr7:22862286-22862557(-)$1	271	225	265	13.7608
CGGGAGCUCCGGGAAACCCCGUGGGCCUGCGCGGCGUUCU	chr2:55459723-55459945(+)$1	222	58	98	13.3368
agccacuguggaacgccauuggagguuucucaaggagcuu	chr1:246417163-246417427(-)$1	264	183	223	15.0793
CAGUUAACCGGGUACCAAGAAGUGGGAAGCCGGCUGAGCU	chr3:53259588-53259952(-)$1	364	71	111	14.2136
AUUUUGGGGAAGCGUUGCCGUGGAGCGCUAGGCUGCUUAA	chr14:50052902-50053127(-)$1	225	142	182	13.0863
AGCUAUGUAGAUGGAGUGAAGUUUUGCUCCCCACAAGCAG	chr8:125559203-125559455(+)$1	252	181	221	12.1077
AAGUGCAGCUGCUGUGCCUGAUGCCAGGACAGCUGUGCUC	chr16:56717812-56718084(+)$1	272	128	168	15.3496
AGAUGGAUGUGAAUGUUGGUGAUAUUGAUAUUGAAGGUCC	chr11:62296868-62297121(-)$1	253	88	128	11.9011
UUUUAAUUCUUACAGGUAGCAACACAAGUCGGAAUAGAAU	chrX:77160588-77160875(+)$1	287	77	117	14.9334
GUUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAAGC	chr14:70238223-70238472(+)$1	249	124	164	19.3495
UGGGUAACGUGAUGGUGAUUAUUCUGGCUACUCACUUUGG	chr11:5289642-5289871(-)$1	229	48	88	15.1498
AUUUGUCUGUGCCCUCGUCGCUUCUUUGGUACAGAUGUCU	chr1:116947129-116947436(+)$1	307	266	306	19.2144
UACUUUGGAACUGUACCUUGGAUGGUUUUGUUUAUUAAAA	chr6:170844135-170844411(-)$1	276	149	189	15.9450
AUGUGUAGUCCAGGUUUGAGAGGAACUGGAAGGGGGGUGA	chr16:1749181-1749427(+)$1	246	47	87	12.6175
CGGGCGCUGGCAAAUCCGGCCCAGGAUGUAGAGCUGGCAG	chr15:79165205-79165490(+)$1	285	15	55	15.2069
ACGGGCACUUCAUGCUGCAUGCCCGGGGUGAGGUGUAGGC	chr19:44111533-44111822(-)$1	289	16	56	17.4508
ACCUUGUACAGAAUGUGUUAAAUUUCUUGUACAAAAUUGU	chr2:47387818-47388044(-)$1	226	132	172	12.2435
GCCGAGUGACAGAGACGCUCAGGCUGUGUUCUCAGGUGAG	chr19:58898538-58898791(+)$1	253	133	173	13.0264
AAGGAACUAUGUCUGGAAGGUACGCGUUUUAAAUAUAGUU	chr3:197677737-197677950(+)$1	213	93	133	14.2849
AGGGCUUGGACUUGGGUGGCAGAGGAGGGGUCCAAGUUCC	chr11:62300894-62301151(-)$1	257	50	90	13.7623
AUGAUUUUAUUCUUUGUGAGUUAAUUAGAAUAAAGUCAUU	chr7:56169257-56169498(-)$1	241	184	224	18.9657
UGGGUAACGUGAUGGUGAUUAUUCUGGCUACUCACUUUGG	chr11:5289611-5289827(-)$1	216	4	44	14.9831
UGGGUAACGUGAUGGUGAUUAUUCUGGCUACUCACUUUGG	chr11:5289627-5289839(-)$1	212	16	56	15.1498
CCUGGGCUAACGACGGCUACUGAGCACUCCCAGCCCGGGG	chr9:139745231-139745501(+)$1	270	45	85	13.3397
CUUCGGGGCAGGGAGAGGCUGGGGGUCCUCACCCCUGCUC	chr19:40330970-40331256(-)$1	286	233	273	15.3243
UUGGGUCCCUGCCCUCCCACCCAGGUUUGGUUCCUCCCGG	chr7:100276510-100276822(+)$1	312	26	66	14.6905
GCCCUGGACGUGUCCGCUGUUGUGUUGAGACGUGUGGUGU	chr17:79991706-79991976(+)$1	270	38	78	13.3188
GGGCAGGUAAGAAUGAGCGUCUCCUCCUUUCUUCUCUGAC	chr1:8923234-8923464(-)$1	230	165	205	13.6427
GUGCUGGGUGCAGAUGCAGUGUGGCUCUGGAUAGCACCUU	chr1:173836066-173836282(-)$1	216	106	146	13.7819
CUCCCUGGGCCCGUGCAGUCAUCUGCCGCGUAUCCGAGCC	chr10:79793533-79793763(+)$1	230	135	175	12.7715
UACUCACUUUGGCAAGGAGUUCACCCCUGAAGUGCAGGCU	chr11:5289707-5289926(-)$1	219	131	171	12.9999
GCCAUGCGCAGGCGGAGGAGCGCCUCUUUCCCUUCGGUGU	chrX:153626620-153626826(+)$1	206	74	114	12.7398
AGAAAUGCCUGCAAAGCUUGUCCGCUGUAAGCAAAUGGCC	chr1:8922863-8923094(-)$1	231	35	75	16.8883
CUGGGUGGAUGGGACUCGGAGAAGAGCCCUUCUCACUCCA	chr16:30081228-30081450(+)$1	222	152	192	15.5151

#DB
.(((((((((....(((......)))...))))))))).)	chr14:70238181-70238423(+)$1	1	166	206	19.3495
(((((.....(((..(((....)))..)))...)))))))	chr16:204215-204475(+)$1	1	195	235	15.2949
((...((((.....(((......)))....))))..))))	chr8:91269546-91269863(+)$1	1	171	211	14.2304
)(((((((((((.(((........))).))))))))))))	chr8:58118255-58118530(+)$1	1	206	246	12.8542
((((((((((((.(((((.(....).))))).))))))))	chr3:197677706-197677937(+)$1	1	124	164	14.2849
...(((((((.((((..........))))...))))))))	chr6:75947415-75947656(-)$1	1	191	231	11.6889
((.((((((((.(((((......))).)).))))))))))	chr16:89627017-89627221(+)$1	1	29	69	13.0344
(((.((.((((.((.........)).)))).)).))))))	chr11:118279750-118279997(+)$1	1	87	127	13.1055
((((((((((....(((.........)))..)))))))))	chr2:98264508-98264744(+)$1	1	118	158	16.5220
((.(((.((((((..((......)).))))..)).))).)	chr6:31698634-31698853(-)$1	1	117	157	15.1932
(((.(.(.((....((.((....)).))...)).).).))	chr2:97560070-97560322(-)$1	1	117	157	12.3956
(((((((((((((((((........)))))..))))))))	chr7:54819929-54820189(-)$1	1	145	185	12.9799
((((....((.((((((......))).))).))...))))	chr6:31694740-31694991(-)$1	1	99	139	17.1303
(.(((...((((((((((...))))))))))....))).)	chr1:28564377-28564617(+)$1	1	112	152	15.0847
(((.(((.(((.(..(((.(....).)))..)))).))).	chr7:22862286-22862557(-)$1	1	225	265	13.7608
.((((((.(((.(...(((...)))....).))).)))))	chr2:55459723-55459945(+)$1	1	58	98	13.3368
(((..((..((((.(((......)))))))..))..))).	chr1:246417163-246417427(-)$1	1	183	223	15.0793
(((((..((((.(.(((.....)))..).))))...))))	chr3:53259588-53259952(-)$1	1	71	111	14.2136
((((((((.(((((((.(...).))))))....).)))))	chr14:50052902-50053127(-)$1	1	142	182	13.0863
.(((.(((....(((((((....)))))))..)))))).)	chr8:125559203-125559455(+)$1	1	181	221	12.1077
.(((((((((((((.((.....)))))..)))))))))).	chr16:56717812-56718084(+)$1	1	128	168	15.3496
...(((((.(.(((((((((...)))))))))..).))))	chr11:62296868-62297121(-)$1	1	88	128	11.9011
(((((.((((.((..((......))..)).))))))))))	chrX:77160588-77160875(+)$1	1	77	117	14.9334
.(((((((((....(((......)))...))))))))).)	chr14:70238223-70238472(+)$1	1	124	164	19.3495
(.(.(((.((((((((.(......).)))).)))).))).	chr11:5289642-5289871(-)$1	1	48	88	15.1498
...((((((((((...(......)...)))))))))))))	chr1:116947129-116947436(+)$1	1	266	306	19.2144
(((((((((((...(((......)))...)))........	chr6:170844135-170844411(-)$1	1	149	189	15.9450
((.(.(..(((((.(((.....))))))))..).).))))	chr16:1749181-1749427(+)$1	1	47	87	12.6175
(.(((.(((.((..(((......)))))))).))).))))	chr15:79165205-79165490(+)$1	1	15	55	15.2069
....(((((((((.(((......))).)))))))))..))	chr19:44111533-44111822(-)$1	1	16	56	17.4508
(..((((((((((..(....)..))).)))))))...).)	chr2:47387818-47388044(-)$1	1	132	172	12.2435
((((((.((((.((.(......))).))))))).))))))	chr19:58898538-58898791(+)$1	1	133	173	13.0264
((((((((((((.(((((.(....).))))).))))))))	chr3:197677737-197677950(+)$1	1	93	133	14.2849
.((((((((((((..............)))))))))))).	chr11:62300894-62301151(-)$1	1	50	90	13.7623
(((((((((((((..((......)).))))))))))))).	chr7:56169257-56169498(-)$1	1	184	224	18.9657
(.(.(((.((((((((.(......).)))).)))).))).	chr11:5289611-5289827(-)$1	1	4	44	14.9831
(.(.(((.((((((((.(......).)))).)))).))).	chr11:5289627-5289839(-)$1	1	16	56	15.1498
)(((((((...((..(((....)))..))..)))))))((	chr9:139745231-139745501(+)$1	1	45	85	13.3397
))(((((((((((.((((((...)).))))..))))))))	chr19:40330970-40331256(-)$1	1	233	273	15.3243
(((((.....(((...((.....))...)))....)))))	chr7:100276510-100276822(+)$1	1	26	66	14.6905
.((..(.((((.((.((......)).)).)))).))))))	chr17:79991706-79991976(+)$1	1	38	78	13.3188
(((((((.(((((.(((......)))..))))).)))).)	chr1:8923234-8923464(-)$1	1	165	205	13.6427
((((((....((((.((......))))))..)))))))..	chr1:173836066-173836282(-)$1	1	106	146	13.7819
(((...(((..(((((((....))).))))..))))))))	chr10:79793533-79793763(+)$1	1	135	175	12.7715
..((((((((((...((......)).)))))))).))...	chr11:5289707-5289926(-)$1	1	131	171	12.9999
((((((((.(((.(((((((...)))))))))).).))))	chrX:153626620-153626826(+)$1	1	74	114	12.7398
(((((.((((((..(((......)))....)))...))).	chr1:8922863-8923094(-)$1	1	35	75	16.8883
..(((((((((((((((......)))....))))).))))	chr16:30081228-30081450(+)$1	1	152	192	15.5151

#PSSM
= : 0.16	c : 0.12	g : 0.12	[ : 0.10	e : 0.10	# : 0.06	i : 0.06	a : 0.04	! : 0.04	" : 0.04	d : 0.04	f : 0.02	B : 0.02	b : 0.02	$ : 0.02	
= : 0.22	c : 0.14	i : 0.10	[ : 0.10	g : 0.10	e : 0.08	# : 0.06	f : 0.04	! : 0.04	" : 0.02	d : 0.02	b : 0.02	$ : 0.02	
= : 0.25	c : 0.14	g : 0.12	i : 0.10	# : 0.06	[ : 0.06	a : 0.06	" : 0.04	e : 0.04	b : 0.04	f : 0.02	! : 0.02	d : 0.02	
= : 0.25	g : 0.16	[ : 0.12	i : 0.10	c : 0.10	" : 0.04	! : 0.04	e : 0.04	h : 0.02	f : 0.02	a : 0.02	# : 0.02	d : 0.02	b : 0.02	
= : 0.25	g : 0.16	c : 0.16	i : 0.10	" : 0.04	h : 0.04	! : 0.04	[ : 0.04	e : 0.04	b : 0.02	a : 0.02	# : 0.02	f : 0.02	d : 0.02	
= : 0.20	c : 0.14	g : 0.12	i : 0.10	[ : 0.08	$ : 0.04	d : 0.04	h : 0.04	b : 0.04	" : 0.04	a : 0.04	# : 0.02	f : 0.02	! : 0.02	e : 0.02	
= : 0.20	c : 0.16	i : 0.10	g : 0.10	[ : 0.08	d : 0.06	$ : 0.04	h : 0.04	# : 0.04	! : 0.04	a : 0.02	" : 0.02	f : 0.02	b : 0.02	e : 0.02	
= : 0.20	[ : 0.14	d : 0.12	i : 0.10	g : 0.08	c : 0.08	$ : 0.04	h : 0.04	# : 0.04	! : 0.04	b : 0.02	" : 0.02	e : 0.02	a : 0.02	
= : 0.22	d : 0.18	c : 0.12	i : 0.06	g : 0.06	b : 0.06	[ : 0.06	$ : 0.04	h : 0.04	# : 0.04	e : 0.04	! : 0.02	" : 0.02	
= : 0.22	d : 0.20	c : 0.10	i : 0.06	$ : 0.06	e : 0.06	g : 0.04	h : 0.04	b : 0.04	a : 0.04	# : 0.04	[ : 0.02	" : 0.02	! : 0.02	
= : 0.20	d : 0.20	c : 0.16	# : 0.10	[ : 0.08	e : 0.06	h : 0.04	$ : 0.02	f : 0.02	b : 0.02	i : 0.02	" : 0.02	! : 0.02	
= : 0.18	d : 0.16	c : 0.14	[ : 0.14	# : 0.10	b : 0.06	e : 0.06	i : 0.04	$ : 0.02	f : 0.02	" : 0.02	h : 0.02	
d : 0.16	b : 0.12	c : 0.10	= : 0.10	# : 0.08	[ : 0.08	e : 0.08	a : 0.06	i : 0.04	" : 0.04	! : 0.04	$ : 0.02	f : 0.02	g : 0.02	
! : 0.18	d : 0.12	[ : 0.12	" : 0.10	# : 0.08	e : 0.08	b : 0.08	c : 0.06	g : 0.04	$ : 0.02	= : 0.02	f : 0.02	i : 0.02	w : 0.02	
c : 0.33	! : 0.14	d : 0.12	" : 0.08	[ : 0.08	e : 0.06	g : 0.04	r : 0.02	b : 0.02	= : 0.02	f : 0.02	i : 0.02	w : 0.02	
c : 0.41	b : 0.16	d : 0.08	e : 0.06	" : 0.06	g : 0.04	a : 0.04	s : 0.02	r : 0.02	= : 0.02	f : 0.02	i : 0.02	w : 0.02	
c : 0.41	b : 0.16	[ : 0.10	e : 0.06	g : 0.04	q : 0.02	s : 0.02	r : 0.02	= : 0.02	i : 0.02	a : 0.02	m : 0.02	o : 0.02	w : 0.02	d : 0.02	
o : 0.41	c : 0.10	a : 0.08	n : 0.06	q : 0.04	e : 0.04	r : 0.04	b : 0.04	g : 0.04	s : 0.02	= : 0.02	i : 0.02	m : 0.02	w : 0.02	d : 0.02	
o : 0.47	m : 0.08	n : 0.08	[ : 0.06	q : 0.04	r : 0.04	b : 0.04	l : 0.04	g : 0.04	s : 0.02	c : 0.02	i : 0.02	w : 0.02	
o : 0.47	m : 0.12	n : 0.08	a : 0.06	l : 0.06	q : 0.04	r : 0.04	s : 0.02	i : 0.02	w : 0.02	b : 0.02	g : 0.02	
o : 0.47	m : 0.16	l : 0.12	n : 0.08	q : 0.04	r : 0.04	s : 0.02	a : 0.02	w : 0.02	
o : 0.47	m : 0.16	l : 0.08	n : 0.08	q : 0.04	r : 0.04	s : 0.02	= : 0.02	a : 0.02	2 : 0.02	w : 0.02	
o : 0.45	c : 0.12	m : 0.10	l : 0.06	q : 0.04	r : 0.04	s : 0.02	= : 0.02	] : 0.02	b : 0.02	2 : 0.02	a : 0.02	w : 0.02	n : 0.02	
c : 0.39	b : 0.25	m : 0.06	o : 0.06	q : 0.04	g : 0.04	s : 0.02	r : 0.02	= : 0.02	f : 0.02	i : 0.02	a : 0.02	w : 0.02	
c : 0.43	b : 0.22	a : 0.12	g : 0.04	s : 0.02	r : 0.02	q : 0.02	= : 0.02	f : 0.02	i : 0.02	3 : 0.02	w : 0.02	
c : 0.31	] : 0.31	2 : 0.08	d : 0.04	e : 0.04	g : 0.04	3 : 0.04	r : 0.02	= : 0.02	4 : 0.02	f : 0.02	i : 0.02	w : 0.02	
d : 0.22	3 : 0.10	2 : 0.10	4 : 0.08	c : 0.08	e : 0.08	] : 0.08	b : 0.06	= : 0.04	g : 0.04	f : 0.02	i : 0.02	w : 0.02	h : 0.02	
d : 0.22	b : 0.12	3 : 0.08	c : 0.08	4 : 0.08	e : 0.08	= : 0.08	g : 0.06	2 : 0.04	i : 0.04	] : 0.02	a : 0.02	f : 0.02	h : 0.02	
d : 0.22	c : 0.12	= : 0.10	e : 0.10	3 : 0.08	4 : 0.08	b : 0.06	g : 0.06	] : 0.04	i : 0.04	f : 0.02	2 : 0.02	h : 0.02	
d : 0.22	= : 0.12	c : 0.10	e : 0.10	i : 0.08	4 : 0.08	2 : 0.08	g : 0.06	3 : 0.04	] : 0.04	a : 0.02	h : 0.02	
2 : 0.22	= : 0.12	] : 0.12	c : 0.12	i : 0.08	d : 0.08	e : 0.08	3 : 0.06	h : 0.04	4 : 0.02	g : 0.02	
d : 0.14	2 : 0.14	= : 0.12	c : 0.10	i : 0.08	] : 0.06	b : 0.06	4 : 0.06	g : 0.06	3 : 0.04	h : 0.04	e : 0.04	a : 0.02	
= : 0.20	c : 0.16	d : 0.14	b : 0.10	g : 0.08	i : 0.06	4 : 0.06	h : 0.04	e : 0.04	3 : 0.02	2 : 0.02	> : 0.02	a : 0.02	
= : 0.22	] : 0.14	d : 0.10	c : 0.10	g : 0.08	i : 0.06	3 : 0.06	h : 0.04	b : 0.04	4 : 0.04	a : 0.02	2 : 0.02	> : 0.02	e : 0.02	
= : 0.25	a : 0.10	d : 0.10	g : 0.08	] : 0.08	3 : 0.08	c : 0.08	i : 0.06	2 : 0.04	4 : 0.04	h : 0.02	> : 0.02	e : 0.02	
= : 0.27	] : 0.20	i : 0.08	g : 0.08	c : 0.08	3 : 0.08	2 : 0.04	d : 0.04	b : 0.04	h : 0.02	f : 0.02	> : 0.02	
= : 0.27	c : 0.20	g : 0.14	i : 0.08	d : 0.06	f : 0.04	e : 0.04	b : 0.04	h : 0.02	a : 0.02	> : 0.02	2 : 0.02	3 : 0.02	
= : 0.25	c : 0.20	g : 0.14	i : 0.08	d : 0.08	f : 0.04	e : 0.04	h : 0.02	] : 0.02	> : 0.02	2 : 0.02	a : 0.02	b : 0.02	3 : 0.02	
= : 0.25	c : 0.18	] : 0.14	g : 0.10	e : 0.06	d : 0.06	f : 0.04	i : 0.04	> : 0.02	b : 0.02	: : 0.02	a : 0.02	3 : 0.02	
= : 0.16	d : 0.14	e : 0.12	] : 0.12	c : 0.08	g : 0.08	f : 0.04	i : 0.04	: : 0.04	H : 0.02	a : 0.02	7 : 0.02	> : 0.02	2 : 0.02	b : 0.02	3 : 0.02	

#score	699.2810801758327
#seq	48
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_transcript_m1_run2.txt

#BEAR
^^^^^^^^^^^^^^^^^^^^^^^^^dddd4	chr6:128792418-128792677(-)$1	259	173	203	31.7121
""dddd^^^^^^^^^^^^^^^^^^^^^^^^	chr17:60608352-60608652(+)$1	300	135	165	35.7310
hhhhhh^^^^^^^^^^^^^^^^^^^^hhhh	chr20:45844496-45844746(-)$1	250	146	176	30.8404
ffffff^^^^^^^^^^^^^^^^^^^^^^^^	chr1:150275315-150275576(+)$1	261	61	91	35.9724
!eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr11:129690710-129690973(+)$1	263	160	190	36.5096
#eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr7:128874671-128874973(+)$1	302	89	119	36.3750
bb^^^^^^^^^^^^^^^^^^^^^^^bb444	chr3:107337019-107337297(+)$1	278	239	269	32.4690
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^	chr18:57001456-57001817(-)$1	361	75	105	36.4491
ffffff^^^^^^^^^^^^^^^^^^^^^^ff	chr20:5117703-5117946(+)$1	243	152	182	34.7514
ffffff^^^^^^^^^^^^^^^^^^^^^^^^	chr19:54378175-54378406(+)$1	231	14	44	35.9724
hhhhhh^^^^^^^^^^^^^^^^^^^^^^^h	chr3:121424424-121424729(-)$1	305	28	58	34.1832
ffffff^^^^^^^^^^^^^^^^^^^fffff	chr2:203091197-203091539(-)$1	342	7	37	32.0936
eeee!!cccyyyyyyyyyyyyyyyyccc22	chr2:180074338-180074628(-)$1	290	115	145	23.0528
======yyyyyyyyyyyyyyyy========	chr10:135222519-135222811(+)$1	292	242	272	22.9939
ffffff^^^^^^^^^^^^^^^^^^^^^^^^	chr6:16436988-16437230(-)$1	242	186	216	35.9724
dddd^^^^^^^^^^^^^^^^^^^^^^dddd	chr2:85548099-85548330(-)$1	231	122	152	32.9050
==!!eeeeeyyyyyyyyyyyyyyyyeeeee	chr17:65148837-65149184(-)$1	347	75	105	22.6045
gggggggyyyyyyyyyyyyyyyyggggggg	chr12:100923328-100923648(+)$1	320	183	213	22.2358
[ccc[bb^^^^^^^^^^^^^^^^^^bbccc	chr3:47172107-47172353(-)$1	246	65	95	31.1041
====^^^^^^^^^^^^^^^^^^^^^=====	chr9:5707316-5707561(+)$1	245	114	144	33.0781
iiiiiiiiiyyyyyyyyyyyyyyyyiiiii	chr16:23121566-23121824(-)$1	258	184	214	22.0487
f[dddd^^^^^^^^^^^^^^^^^^^^^^^^	chr8:17763097-17763343(-)$1	246	175	205	35.8420
ee!!bb^^^^^^^^^^^^^^^^^^^^^^^^	chr5:112909762-112910047(+)$1	285	89	119	35.8617
!!dddd^^^^^^^^^^^^^^^^^^^^dddd	chr7:96602487-96602739(-)$1	252	151	181	33.1121
iiiiii^^^^^^^^^^^^^^^^^^^^^^^^	chr2:179983737-179984008(-)$1	271	187	217	36.2393
:eeeee^^^^^^^^^^^^^^^^^^^eeeee	chr7:156498117-156498364(-)$1	247	186	216	31.8341
:eeeee^^^^^^^^^^^^^^^^^^^eeeee	chr11:46582008-46582232(-)$1	224	3	33	31.8341
ffffff^^^^^^^^^^^^^^^^^^^^^^^^	chr13:24736041-24736335(+)$1	294	54	84	35.9724
ee[ccc^^^^^^^^^^^^^^^^^^^^^^^^	chr1:94887445-94887682(+)$1	237	101	131	36.1260
!!dddd^^^^^^^^^^^^^^^^^^^^^ddd	chr2:186657735-186657997(-)$1	262	57	87	33.9626
dddd[bb^^^^^^^^^^^^^^^^^^bb]dd	chr1:211976490-211976773(-)$1	283	50	80	30.4970
[bb[bb^^^^^^^^^^^^^^^^^^^^^^bb	chr20:33647427-33647718(-)$1	291	144	174	33.9137
eee[bb^^^^^^^^^^^^^^^^^^^^^^^^	chr10:34598342-34598581(-)$1	239	66	96	35.9389
ddd!!a^^^^^^^^^^^^^^^^^^^^^^^^	chr17:60126404-60126664(-)$1	260	192	222	35.9827
d[dddd^^^^^^^^^^^^^^^^^^^dddd]	chr12:11260455-11260715(-)$1	260	90	120	31.9475
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^	chr4:113164335-113164599(+)$1	264	29	59	36.4491
[eeeee^^^^^^^^^^^^^^^^^^^^eeee	chr20:25417234-25417503(+)$1	269	200	230	33.9852
gggggg^^^^^^^^^^^^^^^^^^^^^ggg	chr11:57585398-57585684(+)$1	286	54	84	34.4402
[eeeee^^^^^^^^^^^^^^^^^^^^^^^e	chr9:79855999-79856308(+)$1	309	156	186	36.0437
ffffff^^^^^^^^^^^^^^^^^^^fffff	chr7:139860467-139860705(-)$1	238	35	65	32.0936
iiiiiii^^^^^^^^^^^^^^^^^^iiiii	chr3:178893086-178893360(+)$1	274	15	45	30.9809
eeeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr10:97903091-97903397(+)$1	306	10	40	36.3797
beeeee^^^^^^^^^^^^^^^^^^eeeee:	chr20:60729828-60730078(+)$1	250	150	180	30.3111
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:78198269-78198505(-)$1	236	45	75	35.2623
gggggg^^^^^^^^^^^^^^^^^^^^^^^^	chr2:138726705-138726950(+)$1	245	116	146	36.3056
ffffff^^^^^^^^^^^^^^^^^^^^ffff	chr20:40211663-40211917(-)$1	254	219	249	33.1385
hhhhh^^^^^^^^^^^^^^^^^^^^^^^^h	chr2:85547858-85548119(-)$1	261	95	125	34.5153
eeeee^^^^^^^^^^^^^^^^^^^^^^^ee	chr4:113160350-113160629(+)$1	279	81	111	35.3766
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:119662439-119662765(-)$1	326	136	166	35.7518
ffffff^^^^^^^^^^^^^^^^^^ffffff	chr19:56816912-56817162(-)$1	250	207	237	30.5006
gggggg^^^^^^^^^^^^^^^^^^^^^^^^	chr6:45259336-45259633(-)$1	297	28	58	36.3056

#otherMatches

#Seq PSSM
UUUCCUGCCUCAGUUUCUACUUCCAAAUGU	chr6:128792418-128792677(-)$1	259	173	203	31.7121
cuuucauccguucugaauaauuagccauug	chr17:60608352-60608652(+)$1	300	135	165	35.7310
GCACUUAAAUAUCCUCAUCUAUCUACAAGU	chr20:45844496-45844746(-)$1	250	146	176	30.8404
AGGGAAUGCCAUUUACCAACCCCCAUCAUU	chr1:150275315-150275576(+)$1	261	61	91	35.9724
ugaggguuucgcuccuuuacacccccaccc	chr11:129690710-129690973(+)$1	263	160	190	36.5096
uucuguugcugucauguuuuucuauucucu	chr7:128874671-128874973(+)$1	302	89	119	36.3750
gcuguuucuucuuuucuuaauuucugcuua	chr3:107337019-107337297(+)$1	278	239	269	32.4690
CUAUGACCUCCUUCAACCACAAUUCUAUCC	chr18:57001456-57001817(-)$1	361	75	105	36.4491
GAAAUGUGUUCUUUCUGUCACCCUCCCUCA	chr20:5117703-5117946(+)$1	243	152	182	34.7514
cagccuguuucucuuuuuCCACUCUUCUUU	chr19:54378175-54378406(+)$1	231	14	44	35.9724
aguguuuuuucacauuuggcuauauaacug	chr3:121424424-121424729(-)$1	305	28	58	34.1832
CCUCAUGAAUAUUGUACAUUUGAAAAUGAG	chr2:203091197-203091539(-)$1	342	7	37	32.0936
uagauugucaauuugugcacuuuccgacuu	chr2:180074338-180074628(-)$1	290	115	145	23.0528
gaaauuuaaaauuuuucuuauuaauuucuu	chr10:135222519-135222811(+)$1	292	242	272	22.9939
cucugaucaaaacccuccagugccucucag	chr6:16436988-16437230(-)$1	242	186	216	35.9724
GUACCAGCUCCUUUCCAUCCACCUUCGUAU	chr2:85548099-85548330(-)$1	231	122	152	32.9050
aguccuguggucagucuucauuuuacguag	chr17:65148837-65149184(-)$1	347	75	105	22.6045
ccugauucuggcuacucuUAAUUAAUCAGG	chr12:100923328-100923648(+)$1	320	183	213	22.2358
GCUAACAUAUUCUUUUUUUUUUCUCUGUAG	chr3:47172107-47172353(-)$1	246	65	95	31.1041
uuucuguccaguucuauccauuauugaaag	chr9:5707316-5707561(+)$1	245	114	144	33.0781
GUUAGUUAACACCACCGUCCUCUUCUUAAU	chr16:23121566-23121824(-)$1	258	184	214	22.0487
aucauucccaaagcaacagccucuuucccu	chr8:17763097-17763343(-)$1	246	175	205	35.8420
uguugauguuguuguuguuuucuguuuguu	chr5:112909762-112910047(+)$1	285	89	119	35.8617
GAUCUGGUCCCUUUCCCUUCUUAAAACAGA	chr7:96602487-96602739(-)$1	252	151	181	33.1121
AGGAGACCCUUCAUAAUCCAAUUCUUGCAU	chr2:179983737-179984008(-)$1	271	187	217	36.2393
caggcucaaacaguccuuccaccucagccu	chr7:156498117-156498364(-)$1	247	186	216	31.8341
CCUCCUUGUUCUUCCUUCCGUUUUUAGGAG	chr11:46582008-46582232(-)$1	224	3	33	31.8341
GGAGAAAUCUCACUCCUUUUCUUUUUCCAC	chr13:24736041-24736335(+)$1	294	54	84	35.9724
GUGUGGUCCUUCCCUACUUUucccacucau	chr1:94887445-94887682(+)$1	237	101	131	36.1260
AAAGGAUUUUCCCUUUCUUUAUCUAAUUCC	chr2:186657735-186657997(-)$1	262	57	87	33.9626
gauuaucuuccuucccuaucauccugaaaa	chr1:211976490-211976773(-)$1	283	50	80	30.4970
ucgucgucuucuucgucuucuucuucuucg	chr20:33647427-33647718(-)$1	291	144	174	33.9137
ucugccuuuuuuuuuuuuuuuuuuuuuuuu	chr10:34598342-34598581(-)$1	239	66	96	35.9389
cauuucucauuucuccuuuuuuuuuuuuuu	chr17:60126404-60126664(-)$1	260	192	222	35.9827
gucauaccacucucugcacuuuuaauaugu	chr12:11260455-11260715(-)$1	260	90	120	31.9475
CCAGCUUCUCACAUCACUUUGUCCUUUAUC	chr4:113164335-113164599(+)$1	264	29	59	36.4491
cagggaccauuucuuauuuuucuuuuuccu	chr20:25417234-25417503(+)$1	269	200	230	33.9852
GUGCACAACCCACCACCCCCUUUACUCGUG	chr11:57585398-57585684(+)$1	286	54	84	34.4402
ggguaauuucuucuaauuuaucuucucauu	chr9:79855999-79856308(+)$1	309	156	186	36.0437
CUGCUUUUCCAACCAUCCAAAUGCCAAGUA	chr7:139860467-139860705(-)$1	238	35	65	32.0936
ucugguaucuuccagcuuucaauuuugcua	chr3:178893086-178893360(+)$1	274	15	45	30.9809
AGUCUGUUCUCACUUAACCUCCCCAUCAUG	chr10:97903091-97903397(+)$1	306	10	40	36.3797
cucaacuucauaucccgccccucuguugaa	chr20:60729828-60730078(+)$1	250	150	180	30.3111
ucuuucuuucuuucuuucucucucucucuc	chr11:78198269-78198505(-)$1	236	45	75	35.2623
aucaccauccacuacuacuauaacucugca	chr2:138726705-138726950(+)$1	245	116	146	36.3056
agucccucuauccccuucugccaucuggga	chr20:40211663-40211917(-)$1	254	219	249	33.1385
GGUUACCAGUUAUCCAAUCACCAAAUCCAU	chr2:85547858-85548119(-)$1	261	95	125	34.5153
UCCUAUCUUUUCUCUUAAAUAUGUUUCUUA	chr4:113160350-113160629(+)$1	279	81	111	35.3766
acccuuuuucucucugucucucucccucuc	chr3:119662439-119662765(-)$1	326	136	166	35.7518
guuuguaccccaaaagauuuuaaaacagau	chr19:56816912-56817162(-)$1	250	207	237	30.5006
cccaaguauguuuuccaaacuuuucaauuu	chr6:45259336-45259633(-)$1	297	28	58	36.3056

#DB
.........................)))).	chr6:128792418-128792677(-)$1	1	173	203	31.7121
..((((........................	chr17:60608352-60608652(+)$1	1	135	165	35.7310
((((((....................))))	chr20:45844496-45844746(-)$1	1	146	176	30.8404
((((((........................	chr1:150275315-150275576(+)$1	1	61	91	35.9724
.(((((........................	chr11:129690710-129690973(+)$1	1	160	190	36.5096
.(((((........................	chr7:128874671-128874973(+)$1	1	89	119	36.3750
((.......................))...	chr3:107337019-107337297(+)$1	1	239	269	32.4690
(((((.........................	chr18:57001456-57001817(-)$1	1	75	105	36.4491
((((((......................))	chr20:5117703-5117946(+)$1	1	152	182	34.7514
((((((........................	chr19:54378175-54378406(+)$1	1	14	44	35.9724
((((((.......................)	chr3:121424424-121424729(-)$1	1	28	58	34.1832
((((((...................)))))	chr2:203091197-203091539(-)$1	1	7	37	32.0936
((((..(((................)))..	chr2:180074338-180074628(-)$1	1	115	145	23.0528
((((((................))))))))	chr10:135222519-135222811(+)$1	1	242	272	22.9939
((((((........................	chr6:16436988-16437230(-)$1	1	186	216	35.9724
((((......................))))	chr2:85548099-85548330(-)$1	1	122	152	32.9050
((..(((((................)))))	chr17:65148837-65149184(-)$1	1	75	105	22.6045
(((((((................)))))))	chr12:100923328-100923648(+)$1	1	183	213	22.2358
.(((.((..................)))))	chr3:47172107-47172353(-)$1	1	65	95	31.1041
((((.....................)))))	chr9:5707316-5707561(+)$1	1	114	144	33.0781
(((((((((................)))))	chr16:23121566-23121824(-)$1	1	184	214	22.0487
(.((((........................	chr8:17763097-17763343(-)$1	1	175	205	35.8420
((..((........................	chr5:112909762-112910047(+)$1	1	89	119	35.8617
..((((....................))))	chr7:96602487-96602739(-)$1	1	151	181	33.1121
((((((........................	chr2:179983737-179984008(-)$1	1	187	217	36.2393
.(((((...................)))))	chr7:156498117-156498364(-)$1	1	186	216	31.8341
.(((((...................)))))	chr11:46582008-46582232(-)$1	1	3	33	31.8341
((((((........................	chr13:24736041-24736335(+)$1	1	54	84	35.9724
((.(((........................	chr1:94887445-94887682(+)$1	1	101	131	36.1260
..((((.....................)))	chr2:186657735-186657997(-)$1	1	57	87	33.9626
((((.((..................)).))	chr1:211976490-211976773(-)$1	1	50	80	30.4970
.((.((......................))	chr20:33647427-33647718(-)$1	1	144	174	33.9137
(((.((........................	chr10:34598342-34598581(-)$1	1	66	96	35.9389
(((..(........................	chr17:60126404-60126664(-)$1	1	192	222	35.9827
(.((((...................)))).	chr12:11260455-11260715(-)$1	1	90	120	31.9475
(((((.........................	chr4:113164335-113164599(+)$1	1	29	59	36.4491
.(((((....................))))	chr20:25417234-25417503(+)$1	1	200	230	33.9852
((((((.....................)))	chr11:57585398-57585684(+)$1	1	54	84	34.4402
.(((((.......................)	chr9:79855999-79856308(+)$1	1	156	186	36.0437
((((((...................)))))	chr7:139860467-139860705(-)$1	1	35	65	32.0936
(((((((..................)))))	chr3:178893086-178893360(+)$1	1	15	45	30.9809
((((((........................	chr10:97903091-97903397(+)$1	1	10	40	36.3797
)(((((..................))))).	chr20:60729828-60730078(+)$1	1	150	180	30.3111
..............................	chr11:78198269-78198505(-)$1	1	45	75	35.2623
((((((........................	chr2:138726705-138726950(+)$1	1	116	146	36.3056
((((((....................))))	chr20:40211663-40211917(-)$1	1	219	249	33.1385
(((((........................)	chr2:85547858-85548119(-)$1	1	95	125	34.5153
(((((.......................))	chr4:113160350-113160629(+)$1	1	81	111	35.3766
((((..........................	chr3:119662439-119662765(-)$1	1	136	166	35.7518
((((((..................))))))	chr19:56816912-56817162(-)$1	1	207	237	30.5006
((((((........................	chr6:45259336-45259633(-)$1	1	28	58	36.3056

#PSSM
f : 0.19	e : 0.15	d : 0.09	g : 0.07	[ : 0.07	h : 0.05	! : 0.05	= : 0.05	i : 0.05	^ : 0.03	b : 0.03	: : 0.03	" : 0.01	# : 0.01	
e : 0.29	f : 0.17	d : 0.07	g : 0.07	h : 0.05	= : 0.05	i : 0.05	^ : 0.03	b : 0.03	[ : 0.03	! : 0.03	" : 0.01	c : 0.01	
e : 0.25	d : 0.17	f : 0.17	g : 0.07	^ : 0.05	h : 0.05	i : 0.05	= : 0.03	! : 0.03	c : 0.01	[ : 0.01	b : 0.01	
e : 0.23	f : 0.17	d : 0.15	g : 0.07	^ : 0.05	h : 0.05	! : 0.05	i : 0.05	= : 0.03	c : 0.03	[ : 0.03	
e : 0.23	f : 0.17	^ : 0.11	d : 0.09	g : 0.07	h : 0.05	i : 0.05	b : 0.05	! : 0.03	[ : 0.03	= : 0.01	c : 0.01	
^ : 0.19	f : 0.17	e : 0.17	d : 0.09	b : 0.09	g : 0.07	i : 0.05	h : 0.03	! : 0.01	= : 0.01	c : 0.01	a : 0.01	
^ : 0.84	b : 0.03	i : 0.03	c : 0.01	y : 0.01	e : 0.01	g : 0.01	
^ : 0.90	y : 0.03	c : 0.01	e : 0.01	i : 0.01	
^ : 0.90	y : 0.03	c : 0.01	e : 0.01	i : 0.01	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.09	
^ : 0.90	y : 0.07	= : 0.01	
^ : 0.90	y : 0.05	= : 0.01	g : 0.01	
^ : 0.86	y : 0.05	= : 0.01	g : 0.01	e : 0.01	f : 0.01	
^ : 0.64	e : 0.07	b : 0.05	f : 0.05	d : 0.03	= : 0.03	i : 0.03	c : 0.01	g : 0.01	
^ : 0.54	e : 0.09	d : 0.07	f : 0.07	b : 0.05	= : 0.03	i : 0.03	h : 0.01	c : 0.01	g : 0.01	
^ : 0.50	d : 0.09	e : 0.09	f : 0.07	c : 0.03	= : 0.03	g : 0.03	i : 0.03	h : 0.01	4 : 0.01	] : 0.01	
^ : 0.45	d : 0.11	e : 0.11	f : 0.09	= : 0.03	g : 0.03	i : 0.03	h : 0.01	4 : 0.01	2 : 0.01	c : 0.01	b : 0.01	
^ : 0.39	e : 0.11	f : 0.09	d : 0.07	h : 0.05	4 : 0.03	= : 0.03	g : 0.03	i : 0.03	2 : 0.01	c : 0.01	b : 0.01	] : 0.01	: : 0.01	

#score	1685.9608197024784
#seq	51
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_transcript_m2_run2.txt

#BEAR
gggggg!!ddddmmmmddddggggg	chr6:168226825-168227143(-)$1	318	191	216	10.1740
fff[a!!eeeeemmmmeeeee22a]	chr9:137240217-137240450(+)$1	233	36	61	9.4023
ffff[ccca[bbmmmmbb]a4444c	chr19:1035325-1035576(+)$1	251	38	63	10.0077
============mmmm=========	chr7:101459893-101460174(+)$1	281	92	117	11.5166
ffff!!bb[cccmmmmccc]bb22f	chr7:101459304-101459564(+)$1	260	205	230	11.5458
Cddddgggggggmmmmggggggg33	chr9:137245413-137245671(+)$1	258	226	251	9.6513
ccccc####cccmmmmccc333ccc	chr2:11736693-11736957(+)$1	264	233	258	13.2720
hhhhh"""ddddmmmmdddd333hh	chr2:65356610-65356872(-)$1	262	162	187	9.5468
!!dddd!!ddddmmmmdddd22ddd	chr21:46860699-46860945(+)$1	246	95	120	9.3862
ccc!!a[ccc[ammmmaccc]a22c	chr16:88588625-88588865(+)$1	240	13	38	11.6684
[eeeee"""cccmmmmccc22eeee	chr1:3462782-3463040(-)$1	258	181	206	12.0271
b[a"""ffffffmmmmffffff333	chr21:34775890-34776210(+)$1	320	133	158	10.1850
eeee"""cccooooooccc333eee	chr4:2936220-2936523(-)$1	303	126	151	8.8882
f[a!!gggggggmmmmggggggg22	chr16:88834227-88834525(-)$1	298	106	131	11.3789
dddd!!bb[cccmmmmccc]bb22d	chr2:242751861-242752130(+)$1	269	212	237	11.3333
fffffffffcccmmmmccc]fffff	chr19:2426304-2426547(-)$1	243	98	123	10.2589
f[ccc[a!!cccmmmmccc22accc	chr1:183442098-183442403(+)$1	305	176	201	12.8722
!!a!!gggggggmmmmggggggg22	chr21:45388199-45388501(+)$1	302	63	88	11.5841
gggggg[a!!bbmmmmbb22a]ggg	chr7:766211-766486(-)$1	275	216	241	11.1023
b[bb"""eeeeemmmmeeeee333b	chr20:60736072-60736327(+)$1	255	98	123	9.5218
$$a[dddd!!bbmmmmbb22dddd]	chr1:2204260-2204474(+)$1	214	171	196	9.3383
c:eeeee!!cccmmmmccceeeee:	chr4:6644103-6644433(+)$1	330	262	287	9.3477
eeeee####cccmmmmccc]eeeee	chr11:2154138-2154341(-)$1	203	175	200	11.7893
e[gggggggcccmmmmccc22gggg	chr1:1193024-1193281(-)$1	257	87	112	12.3483
bb[eeeee[cccmmmmccc]eeeee	chr10:977219-977466(-)$1	247	213	238	10.9079
gggggg"""cccmmmmccc22gggg	chr19:1288679-1288943(+)$1	264	66	91	13.0238
dggggggg[cccmmmmccc]ggggg	chr6:37787963-37788243(+)$1	280	148	173	12.4371
fffff[bb[cccmmmmccc]bb]ff	chr17:70550318-70550636(-)$1	318	37	62	10.9048
gggg"""cccbbmmmmbb]ccc]gg	chr19:46503043-46503349(+)$1	306	132	157	10.8229
[bb!!bb!!cccmmmmccc22bb22	chr22:22275677-22275945(-)$1	268	13	38	12.0496
d[bb!!ccc[bbmmmmbb22ccc33	chr2:242157820-242158083(+)$1	263	3	28	10.4934
"""cccffffffmmmmffffff]cc	chr8:142423239-142423490(+)$1	251	175	200	9.3419
e####bb!!cccmmmmccc22bb22	chr16:88591088-88591310(+)$1	222	167	192	11.9597
ccgggggggcccmmmmccc:ddddm	chr21:46869431-46869681(+)$1	250	174	199	9.8720
Ebb[dddd[cccmmmmccc]dddd]	chr9:136837715-136837980(-)$1	265	125	150	10.0693
[dddd[ccc[bbmmmmbb]cccddd	chr11:432183-432459(-)$1	276	50	75	9.2747
ca[iiiiiiiiimmmmiiiiiiiii	chr5:882336-882574(-)$1	238	113	138	10.9711
ggggg[bb[cccmmmmccc]bbggg	chr19:1433961-1434221(+)$1	260	196	221	11.8071
:ddddgggggggmmmmggggggg33	chr9:111781184-111781438(-)$1	254	63	88	9.7654
[a[ccc[eeeeemmmmeeeee22cc	chr19:10982867-10983099(+)$1	232	125	150	9.4160
cc!!bb"""cccmmmmccc333bb2	chr11:61197165-61197469(-)$1	304	172	197	12.3316
#dddd####cccmmmmccc4444dd	chr6:41862605-41862896(-)$1	291	128	153	12.0670
cc:dddd!!cccmmmmccc22dddd	chrX:77083099-77083377(-)$1	278	53	78	10.6600
cc::dddd[cccmmmmccc]ddddd	chr22:20790845-20791123(-)$1	278	89	114	9.0953
ggggggg"""bbmmmmbb333gggg	chr6:7289397-7289625(-)$1	228	112	137	11.5819
C:eeeee!!cccmmmmccc]eeeee	chr18:77671479-77671746(-)$1	267	116	141	9.6579
[a"""bb[ddddmmmmdddd]bb33	chr11:70962125-70962404(-)$1	279	101	126	9.7072
c[ffffff[cccmmmmccc4444ff	chr10:102123613-102123837(+)$1	224	150	175	11.5342
cc"""ccc!!bbmmmmbb22ccc22	chr3:128840514-128840771(-)$1	257	83	108	10.9227
[bb!!gggggggmmmmggggggg22	chr5:1102110-1102368(-)$1	258	209	234	11.0418
ccc!!gggggggmmmmgggggggcc	chr10:134425907-134426179(+)$1	272	245	270	11.1570
eeeee!!eeeeemmmmeeeee]eee	chr5:77447508-77447772(-)$1	264	235	260	8.8711
""ccc[a!!cccmmmmccc]a]ccc	chr19:1168316-1168525(-)$1	209	5	30	12.9875
[ccc####bb[ammmma]bb333cc	chr19:12832954-12833216(-)$1	262	205	230	10.3737
ggggggg[cccnnnnnccc]ggggg	chr11:856555-856807(+)$1	252	38	63	8.2329
"""ccc[a[cccmmmmccc]a]ccc	chr10:103594040-103594393(-)$1	353	202	227	12.6974
!!cccccc[cccmmmmcccccc22c	chr4:1332422-1332734(+)$1	312	180	205	12.1031

#otherMatches

#Seq PSSM
GGUGCUAGGUCUAAAUGGGCGGCGC	chr6:168226825-168227143(-)$1	318	191	216	10.1740
CAGGUGCAGCUCCUCUGAGCUCAGG	chr9:137240217-137240450(+)$1	233	36	61	9.4023
GGUAACUGCUCCAAAUGGUGUUUUC	chr19:1035325-1035576(+)$1	251	38	63	10.0077
GGCUGGUGGCGCUGUGGUGCCGCCG	chr7:101459893-101460174(+)$1	281	92	117	11.5166
ggggccgAGUCGGGGCCGAGUCCCU	chr7:101459304-101459564(+)$1	260	205	230	11.5458
UGCCUGUUGGGUGUGUACCUGACUU	chr9:137245413-137245671(+)$1	258	226	251	9.6513
UGACAGGGGGCAGGAUUGCAGGUGU	chr2:11736693-11736957(+)$1	264	233	258	13.2720
GGCAGUGACUUUUGAAGGAGGACUU	chr2:65356610-65356872(-)$1	262	162	187	9.5468
gaucugaacuugggagcagggcugg	chr21:46860699-46860945(+)$1	246	95	120	9.3862
ACCUGGGAAGUGUACUCCUUGCAUG	chr16:88588625-88588865(+)$1	240	13	38	11.6684
UCAGCCCCACCAUGGCUGGCAGGCU	chr1:3462782-3463040(-)$1	258	181	206	12.0271
CUCAGAGUGGGUGGGAAUCUGCGGG	chr21:34775890-34776210(+)$1	320	133	158	10.1850
cccgggguacgcggggguggggcgg	chr4:2936220-2936523(-)$1	303	126	151	8.8882
GAGGGCCUGGGGGAAAUCUCAGGGA	chr16:88834227-88834525(-)$1	298	106	131	11.3789
GCCCAGCGAGGCCUGUGCUGCGAGG	chr2:242751861-242752130(+)$1	269	212	237	11.3333
CCCCUUAGUGCCACCGGGCUGCUGA	chr19:2426304-2426547(-)$1	243	98	123	10.2589
GGGAGACCGCAGGAAACUGGAGCUU	chr1:183442098-183442403(+)$1	305	176	201	12.8722
GGCAAGGGUCCUGGGGAGGAUCUGG	chr21:45388199-45388501(+)$1	302	63	88	11.5841
GCGGGGCGCCGGGCUACUUCCUCCC	chr7:766211-766486(-)$1	275	216	241	11.1023
CGUUCAGCCUGGUGGGCCGGGAAAG	chr20:60736072-60736327(+)$1	255	98	123	9.5218
AAAGAGCCCCUGGAAACACAGGCUG	chr1:2204260-2204474(+)$1	214	171	196	9.3383
CAGACCUAACAAAUAUUUGAGGUCA	chr4:6644103-6644433(+)$1	330	262	287	9.3477
CCUGACCACGGACGUUUCCAUCAGG	chr11:2154138-2154341(-)$1	203	175	200	11.7893
UGCUGGCCUUUGGGUGCAGUUGGGU	chr1:1193024-1193281(-)$1	257	87	112	12.3483
ccgggccugggccggggccggggcc	chr10:977219-977466(-)$1	247	213	238	10.9079
CCACCUCCUUGGGCCGCUAUAAGGU	chr19:1288679-1288943(+)$1	264	66	91	13.0238
CCGGGAGGAGCAGGGGUGCCCCUUC	chr6:37787963-37788243(+)$1	280	148	173	12.4371
UCAGCGUCUUCCUCCUGGAUGGAGC	chr17:70550318-70550636(-)$1	318	37	62	10.9048
CUCGAAGGCACCGCUGGGAUGCGUG	chr19:46503043-46503349(+)$1	306	132	157	10.8229
UGAGAGGGGGCUCACAAGUGACCGA	chr22:22275677-22275945(-)$1	268	13	38	12.0496
CGCGGGCGCACGAggacgaggcgga	chr2:242157820-242158083(+)$1	263	3	28	10.4934
ACACCAUGCCCACUUCUGGGUACUG	chr8:142423239-142423490(+)$1	251	175	200	9.3419
CGUCUGCAGAGGAGAACCUGAGCCA	chr16:88591088-88591310(+)$1	222	167	192	11.9597
AGGGGAGUGCCCUCCAGGGACCUGG	chr21:46869431-46869681(+)$1	250	174	199	9.8720
UCUGCAGUCAGGUUCCCCUCGCUGG	chr9:136837715-136837980(-)$1	265	125	150	10.0693
GCGGAUGCAGGCUGGGGUGUGCUCU	chr11:432183-432459(-)$1	276	50	75	9.2747
CGUGUUGGGCGGUUGUCUGCUUGGC	chr5:882336-882574(-)$1	238	113	138	10.9711
GCCGGACGGGCUGCAGGGUGUGCUG	chr19:1433961-1434221(+)$1	260	196	221	11.8071
GCCUAUCCUCUGCUCCCAGGGGAAU	chr9:111781184-111781438(-)$1	254	63	88	9.7654
GUGGCCGCCUCUGCAGGGAGGAGGG	chr19:10982867-10983099(+)$1	232	125	150	9.4160
ACGGCCGGAGUCUGCGGGCGGAGGG	chr11:61197165-61197469(-)$1	304	172	197	12.3316
gcggcgggaggcgagagccgggagu	chr6:41862605-41862896(-)$1	291	128	153	12.0670
GGCCUAAAAUGUUUCUACAAAUUAG	chrX:77083099-77083377(-)$1	278	53	78	10.6600
GCAUCUCCACGCAGGGGUGAGGAGC	chr22:20790845-20791123(-)$1	278	89	114	9.0953
UUCCCAGUGGCUUCAAGGAAUUUGG	chr6:7289397-7289625(-)$1	228	112	137	11.5819
CAGCUGGAAUGUCCCCGCAGCCAGC	chr18:77671479-77671746(-)$1	267	116	141	9.6579
GCGUGGGCGAGGCUUGCCUUUCCGU	chr11:70962125-70962404(-)$1	279	101	126	9.7072
UGCAGGAUUCCCUUCUGGGCUUCAU	chr10:102123613-102123837(+)$1	224	150	175	11.5342
ccgggggcgggcgggggcgggcugg	chr3:128840514-128840771(-)$1	257	83	108	10.9227
GCAUUCACUUUGUUGAUAAGGUGUC	chr5:1102110-1102368(-)$1	258	209	234	11.0418
GGCUGGAGGGGCCCUUGCCCCUUGC	chr10:134425907-134426179(+)$1	272	245	270	11.1570
ugaccaaugggauuuaucccagggu	chr5:77447508-77447772(-)$1	264	235	260	8.8711
UGGGUGUGAGGGGGGUUCCAAGGCC	chr19:1168316-1168525(-)$1	209	5	30	12.9875
AUCUGAUUGGGGGAAGCGUCUGGGG	chr19:12832954-12833216(-)$1	262	205	230	10.3737
UUCCUAUUUGUAUUGAGCGUGUGGG	chr11:856555-856807(+)$1	252	38	63	8.2329
GGUGUGAGGCGGUGAACCGGCGUAU	chr10:103594040-103594393(-)$1	353	202	227	12.6974
ggccaggcuggCACACGUCGCCAUU	chr4:1332422-1332734(+)$1	312	180	205	12.1031

#DB
((((((..((((....)))))))))	chr6:168226825-168227143(-)$1	1	191	216	10.1740
(((.(..(((((....)))))..).	chr9:137240217-137240450(+)$1	1	36	61	9.4023
((((.((((.((....)).)....)	chr19:1035325-1035576(+)$1	1	38	63	10.0077
((((((((((((....)))))))))	chr7:101459893-101460174(+)$1	1	92	117	11.5166
((((..((.(((....))).))..)	chr7:101459304-101459564(+)$1	1	205	230	11.5458
)(((((((((((....)))))))..	chr9:137245413-137245671(+)$1	1	226	251	9.6513
(((((....(((....)))...)))	chr2:11736693-11736957(+)$1	1	233	258	13.2720
(((((...((((....))))...))	chr2:65356610-65356872(-)$1	1	162	187	9.5468
..((((..((((....))))..)))	chr21:46860699-46860945(+)$1	1	95	120	9.3862
(((..(.(((.(....)))).)..)	chr16:88588625-88588865(+)$1	1	13	38	11.6684
.(((((...(((....)))..))))	chr1:3462782-3463040(-)$1	1	181	206	12.0271
(.(...((((((....))))))...	chr21:34775890-34776210(+)$1	1	133	158	10.1850
((((...(((......)))...)))	chr4:2936220-2936523(-)$1	1	126	151	8.8882
(.(..(((((((....)))))))..	chr16:88834227-88834525(-)$1	1	106	131	11.3789
((((..((.(((....))).))..)	chr2:242751861-242752130(+)$1	1	212	237	11.3333
)))(((((((((....))).)))))	chr19:2426304-2426547(-)$1	1	98	123	10.2589
(.(((.(..(((....)))..))))	chr1:183442098-183442403(+)$1	1	176	201	12.8722
..(..(((((((....)))))))..	chr21:45388199-45388501(+)$1	1	63	88	11.5841
((((((.(..((....))..).)))	chr7:766211-766486(-)$1	1	216	241	11.1023
(.((...(((((....)))))...)	chr20:60736072-60736327(+)$1	1	98	123	9.5218
..(.((((..((....))..)))).	chr1:2204260-2204474(+)$1	1	171	196	9.3383
).(((((..(((....)))))))).	chr4:6644103-6644433(+)$1	1	262	287	9.3477
(((((....(((....))).)))))	chr11:2154138-2154341(-)$1	1	175	200	11.7893
(.((((((((((....)))..))))	chr1:1193024-1193281(-)$1	1	87	112	12.3483
((.(((((.(((....))).)))))	chr10:977219-977466(-)$1	1	213	238	10.9079
((((((...(((....)))..))))	chr19:1288679-1288943(+)$1	1	66	91	13.0238
((((((((.(((....))).)))))	chr6:37787963-37788243(+)$1	1	148	173	12.4371
(((((.((.(((....))).)).))	chr17:70550318-70550636(-)$1	1	37	62	10.9048
((((...(((((....)).))).))	chr19:46503043-46503349(+)$1	1	132	157	10.8229
.((..((..(((....)))..))..	chr22:22275677-22275945(-)$1	1	13	38	12.0496
(.((..(((.((....))..)))..	chr2:242157820-242158083(+)$1	1	3	28	10.4934
...(((((((((....)))))).))	chr8:142423239-142423490(+)$1	1	175	200	9.3419
(....((..(((....)))..))..	chr16:88591088-88591310(+)$1	1	167	192	11.9597
)))))))))(((....))).((((.	chr21:46869431-46869681(+)$1	1	174	199	9.8720
)((.((((.(((....))).)))).	chr9:136837715-136837980(-)$1	1	125	150	10.0693
.((((.(((.((....)).))))))	chr11:432183-432459(-)$1	1	50	75	9.2747
)(.(((((((((....)))))))))	chr5:882336-882574(-)$1	1	113	138	10.9711
(((((.((.(((....))).)))))	chr19:1433961-1434221(+)$1	1	196	221	11.8071
.(((((((((((....)))))))..	chr9:111781184-111781438(-)$1	1	63	88	9.7654
.(.(((.(((((....)))))..))	chr19:10982867-10983099(+)$1	1	125	150	9.4160
((..((...(((....)))...)).	chr11:61197165-61197469(-)$1	1	172	197	12.3316
.((((....(((....)))....))	chr6:41862605-41862896(-)$1	1	128	153	12.0670
)).((((..(((....)))..))))	chrX:77083099-77083377(-)$1	1	53	78	10.6600
))..((((.(((....))).))))(	chr22:20790845-20791123(-)$1	1	89	114	9.0953
(((((((...((....))...))))	chr6:7289397-7289625(-)$1	1	112	137	11.5819
(.(((((..(((....))).)))))	chr18:77671479-77671746(-)$1	1	116	141	9.6579
.(...((.((((....)))).))..	chr11:70962125-70962404(-)$1	1	101	126	9.7072
(.((((((.(((....)))....))	chr10:102123613-102123837(+)$1	1	150	175	11.5342
((...(((..((....))..)))..	chr3:128840514-128840771(-)$1	1	83	108	10.9227
.((..(((((((....)))))))..	chr5:1102110-1102368(-)$1	1	209	234	11.0418
(((..(((((((....)))))))))	chr10:134425907-134426179(+)$1	1	245	270	11.1570
(((((..(((((....))))).)))	chr5:77447508-77447772(-)$1	1	235	260	8.8711
..(((.(..(((....))).).)))	chr19:1168316-1168525(-)$1	1	5	30	12.9875
.(((....((.(....).))...))	chr19:12832954-12833216(-)$1	1	205	230	10.3737
(((((((.(((.....))).)))))	chr11:856555-856807(+)$1	1	38	63	8.2329
...(((.(.(((....))).).)))	chr10:103594040-103594393(-)$1	1	202	227	12.6974
..((((((.(((....))))))..)	chr4:1332422-1332734(+)$1	1	180	205	12.1031

#PSSM
c : 0.19	g : 0.12	f : 0.12	[ : 0.12	e : 0.08	! : 0.05	b : 0.05	d : 0.05	" : 0.05	C : 0.03	= : 0.01	h : 0.01	$ : 0.01	E : 0.01	: : 0.01	# : 0.01	
c : 0.15	g : 0.14	[ : 0.12	f : 0.08	d : 0.08	e : 0.07	b : 0.07	! : 0.05	" : 0.05	a : 0.05	: : 0.03	= : 0.01	h : 0.01	$ : 0.01	# : 0.01	
g : 0.17	c : 0.12	f : 0.10	d : 0.10	e : 0.10	b : 0.08	a : 0.07	" : 0.07	[ : 0.05	: : 0.03	= : 0.01	h : 0.01	# : 0.01	! : 0.01	
g : 0.17	c : 0.14	d : 0.12	! : 0.12	e : 0.12	f : 0.08	[ : 0.05	" : 0.05	b : 0.03	= : 0.01	h : 0.01	# : 0.01	i : 0.01	: : 0.01	
g : 0.15	! : 0.15	d : 0.15	c : 0.12	e : 0.10	" : 0.10	f : 0.05	# : 0.03	a : 0.01	[ : 0.01	= : 0.01	h : 0.01	i : 0.01	b : 0.01	
g : 0.24	c : 0.10	! : 0.08	" : 0.08	d : 0.08	[ : 0.08	# : 0.07	e : 0.07	b : 0.07	f : 0.03	= : 0.01	a : 0.01	i : 0.01	
g : 0.19	b : 0.12	" : 0.12	c : 0.08	! : 0.07	# : 0.07	[ : 0.07	f : 0.07	d : 0.07	e : 0.05	a : 0.03	= : 0.01	i : 0.01	
! : 0.15	g : 0.15	c : 0.14	e : 0.08	" : 0.08	b : 0.07	# : 0.07	f : 0.07	d : 0.05	a : 0.03	[ : 0.03	= : 0.01	i : 0.01	
[ : 0.19	! : 0.17	g : 0.14	c : 0.10	d : 0.07	e : 0.07	" : 0.07	# : 0.05	f : 0.05	a : 0.01	= : 0.01	i : 0.01	b : 0.01	
c : 0.54	g : 0.10	d : 0.07	e : 0.07	[ : 0.05	! : 0.05	f : 0.03	= : 0.01	i : 0.01	" : 0.01	b : 0.01	
c : 0.49	b : 0.14	g : 0.10	d : 0.07	e : 0.07	[ : 0.03	f : 0.03	= : 0.01	o : 0.01	i : 0.01	
c : 0.47	b : 0.14	g : 0.10	d : 0.07	e : 0.07	a : 0.03	f : 0.03	= : 0.01	o : 0.01	i : 0.01	n : 0.01	
m : 0.96	o : 0.01	n : 0.01	
m : 0.96	o : 0.01	n : 0.01	
m : 0.96	o : 0.01	n : 0.01	
m : 0.96	o : 0.01	n : 0.01	
c : 0.50	b : 0.14	g : 0.10	d : 0.07	e : 0.07	a : 0.03	f : 0.03	= : 0.01	i : 0.01	
c : 0.52	b : 0.14	g : 0.10	d : 0.07	e : 0.07	f : 0.03	= : 0.01	i : 0.01	] : 0.01	
c : 0.52	g : 0.10	d : 0.07	e : 0.07	2 : 0.07	] : 0.05	f : 0.03	= : 0.01	i : 0.01	3 : 0.01	b : 0.01	
] : 0.24	2 : 0.19	g : 0.10	e : 0.08	d : 0.07	3 : 0.07	c : 0.07	f : 0.03	4 : 0.03	a : 0.01	= : 0.01	: : 0.01	i : 0.01	b : 0.01	
g : 0.15	e : 0.14	2 : 0.14	3 : 0.10	c : 0.08	b : 0.07	d : 0.07	4 : 0.05	f : 0.05	a : 0.05	] : 0.03	= : 0.01	i : 0.01	
g : 0.21	b : 0.12	3 : 0.10	e : 0.08	d : 0.08	c : 0.08	] : 0.07	2 : 0.05	4 : 0.05	f : 0.05	a : 0.03	= : 0.01	i : 0.01	
g : 0.24	d : 0.12	e : 0.12	2 : 0.10	c : 0.10	3 : 0.07	b : 0.07	4 : 0.05	] : 0.05	= : 0.01	f : 0.01	i : 0.01	
2 : 0.17	g : 0.15	c : 0.14	d : 0.14	e : 0.12	3 : 0.10	f : 0.05	a : 0.01	4 : 0.01	= : 0.01	h : 0.01	i : 0.01	b : 0.01	
c : 0.19	g : 0.15	2 : 0.12	d : 0.10	e : 0.10	3 : 0.08	f : 0.07	] : 0.05	= : 0.01	h : 0.01	b : 0.01	: : 0.01	m : 0.01	i : 0.01	

#score	616.2877268205701
#seq	57
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_UTR_m3_run2.txt

#BEAR
cc[ffffffuuuuuuuuuuuufffff	chr1:2122050-2122276(-)$1	226	86	112	22.3176
e[gggggggtttttttttttgggggg	chr20:62572803-62573055(-)$1	252	184	210	23.0495
bba[eeeeettttttttttteeeee]	chr14:57734898-57735166(-)$1	268	36	62	22.0830
ggggeeeeettttttttttteeeee2	chr19:19739149-19739413(-)$1	264	110	136	22.5211
e[eeeeebbtttttttttttbb]eee	chr1:39491941-39492172(+)$1	231	118	144	21.4892
!!bb[cccwwwwwwwwwwwwwwccc]	chr5:132202258-132202481(+)$1	223	181	207	22.8384
[bb"""cccuuuuuuuuuuuuccc22	chr1:2122119-2122346(-)$1	227	14	40	23.4267
ccc[dddduuuuuuuuuuuudddd22	chr1:27480982-27481235(-)$1	253	91	117	23.1100
cc::eeeeeuuuuuuuuuuuueeeee	chrX:47442721-47443001(+)$1	280	163	189	20.7701
GGGGddddwwwwwwwwwwwwwwdddd	chr22:20105341-20105590(+)$1	249	196	222	19.9358
beeeeebbuuuuuuuuuuuubb]eee	chr5:126112813-126113060(+)$1	247	20	46	21.4993
=========yyyyyyyyyyyyyyyy=	chr17:46657127-46657350(-)$1	223	76	102	19.5697
::ffffffuuuuuuuuuuuuffffff	chr6:32157447-32157877(-)$1	430	111	137	20.2218
$$$$$ddddtttttttttttdddd55	chr11:75161658-75161918(-)$1	260	109	135	20.1725
hhgggggggtttttttttttgggggg	chr5:175954572-175954827(-)$1	255	148	174	22.8578
bb[ddddvvvvvvvvvvvvvddddbb	chr17:28443922-28444197(+)$1	275	1	27	21.6690
[aggggggguuuuuuuuuuuuggggg	chr19:18433728-18434003(-)$1	275	65	91	23.7829
"""cccwwwwwwwwwwwwwwccc333	chr10:106014819-106015081(+)$1	262	193	219	22.4236
hhhcccwwwwwwwwwwwwwwccc444	chr11:64846067-64846321(-)$1	254	204	230	21.4140
iiiiiiiiiwwwwwwwwwwwwwwiii	chr2:26256923-26257202(+)$1	279	91	117	21.9472
IIIeeeeevvvvvvvvvvvvveeeee	chr8:144678735-144678984(-)$1	249	62	88	19.6380
[dddd!!bbvvvvvvvvvvvvvbb22	chr19:50880598-50880841(+)$1	243	15	41	21.5999
gggggggwwwwwwwwwwwwwwggggg	chr10:7830069-7830322(+)$1	253	166	192	23.0293
[a[ccc[cccssssssssssccc]cc	chr16:619212-619558(+)$1	346	196	222	16.2841
[ccc[dddduuuuuuuuuuuudddd]	chr19:36139151-36139406(+)$1	255	125	151	23.3240
ggggg[ccctttttttttttcccggg	chr22:50050350-50050595(-)$1	245	118	144	23.7941
hhhhhhhhwwwwwwwwwwwwwwhhhh	chr19:50880347-50880657(+)$1	310	120	146	20.9662
gggggggwwwwwwwwwwwwwwggggg	chr16:337422-337668(-)$1	246	173	199	23.0293
!!ffffffwwwwwwwwwwwwwwffff	chr2:198364907-198365159(+)$1	252	201	227	21.7721
hhhhhhhhvvvvvvvvvvvvvhhhhh	chr3:41241464-41241708(+)$1	244	213	239	21.9553
d"""bb[auuuuuuuuuuuua]bb33	chr2:68479485-68479728(-)$1	243	44	70	22.7289
b####cccuuuuuuuuuuuuccc333	chr12:132569358-132569623(+)$1	265	184	210	23.9619
=========ttttttttttt======	chr16:28222737-28222991(-)$1	254	55	81	23.3760
hhhhhhhhvvvvvvvvvvvvvhhhhh	chr1:207494946-207495229(+)$1	283	135	161	21.9553
eeeee[ccctttttttttttccc22e	chr22:20067756-20068007(+)$1	251	208	234	22.6270
gggggggwwwwwwwwwwwwwwggggg	chr14:21484856-21485154(-)$1	298	189	215	23.0293
gggggggwwwwwwwwwwwwwwggggg	chr9:35690581-35690874(-)$1	293	170	196	23.0293
ff[ddddvvvvvvvvvvvvvdddd33	chr17:28443826-28444122(+)$1	296	97	123	22.8734
ffff[ddddtttttttttttdddd]f	chr6:151187488-151187747(+)$1	259	125	151	22.2738
eeee[ddddtttttttttttdddd]e	chr9:140348891-140349150(-)$1	259	183	209	22.2718
:::fffffftttttttttttffffff	chr6:146135599-146135941(-)$1	342	263	289	18.9204
ccbb[ddddvvvvvvvvvvvvvdddd	chr9:124921805-124922105(-)$1	300	170	196	22.0964
iiiiiiiiixxxxxxxxxxxxxxxii	chr17:57918267-57918530(+)$1	263	154	180	17.0280
[ggggggguuuuuuuuuuuugggggg	chr5:141488282-141488530(+)$1	248	92	118	23.8099
dd!!cccvvvvvvvvvvvvvccc333	chr15:59280207-59280498(+)$1	291	123	149	23.6562
cc!!ddddvvvvvvvvvvvvvdddd]	chr19:46142205-46142547(-)$1	342	235	261	23.6417
"""a!!ccctttttttttttccc22a	chr1:27561068-27561388(+)$1	320	73	99	23.5058
!!bb[ddddtttttttttttdddd]b	chr4:38666236-38666544(+)$1	308	258	284	22.4583

#otherMatches

#Seq PSSM
AGCAGUGGCGUGUGAGGGAUGGUCAC	chr1:2122050-2122276(-)$1	226	86	112	22.3176
CACUUCUGCUUCCUCUUAGCGCAGGA	chr20:62572803-62573055(-)$1	252	184	210	23.0495
CCGGUCGGCAGAGAGGGGAAGCCGGG	chr14:57734898-57735166(-)$1	268	36	62	22.0830
UCACGGCGGGAAUUUUCGGGUCGCCG	chr19:19739149-19739413(-)$1	264	110	136	22.5211
ACGAGCAUCGGGUAGGUAGGGGCUGC	chr1:39491941-39492172(+)$1	231	118	144	21.4892
GCUGGGCUGGGAAAGGAUAAGGAGUG	chr5:132202258-132202481(+)$1	223	181	207	22.8384
AGCAAAGCCCAAGGGUAAAACGGCGC	chr1:2122119-2122346(-)$1	227	14	40	23.4267
CUGCCCCUUCCUCUAUCCCUAGGGCU	chr1:27480982-27481235(-)$1	253	91	117	23.1100
GCACCUGUGUCCCACCCCACCCACAG	chrX:47442721-47443001(+)$1	280	163	189	20.7701
UAGUACGGUGCAUUUAUUCUUUCCGU	chr22:20105341-20105590(+)$1	249	196	222	19.9358
UGCAGCCUGAGAGGAAACAAAGUGCU	chr5:126112813-126113060(+)$1	247	20	46	21.4993
GAAUUUGUGUAAGGAAUUUUGUGGUC	chr17:46657127-46657350(-)$1	223	76	102	19.5697
GAGUUUGGGGGGAGAAGUAACCAGGC	chr6:32157447-32157877(-)$1	430	111	137	20.2218
CGAGGGGCUGGGGGCCGAGGAGCCGA	chr11:75161658-75161918(-)$1	260	109	135	20.1725
GCAGGCAGCCCCUGGCGCCUGCUGCC	chr5:175954572-175954827(-)$1	255	148	174	22.8578
CUACGGCGACUGUAUCUUUGGCCGAG	chr17:28443922-28444197(+)$1	275	1	27	21.6690
UCUGCCACUUUCUUUCAGCUUAGUGG	chr19:18433728-18434003(-)$1	275	65	91	23.7829
AAGGCCAAGGGAAUCAGGUGGGCACC	chr10:106014819-106015081(+)$1	262	193	219	22.4236
CACCUGUGUAAAGAGGUUUUCAGUUC	chr11:64846067-64846321(-)$1	254	204	230	21.4140
GGCUCGGUUUCCUGGGGCUAUGUAAC	chr2:26256923-26257202(+)$1	279	91	117	21.9472
GAGGCUUUAAGUGGAAGGAAGAAGGC	chr8:144678735-144678984(-)$1	249	62	88	19.6380
ACAGCAGGGGCGGGGCUUAAGACCAA	chr19:50880598-50880841(+)$1	243	15	41	21.5999
CUUGCGGGAAGAUCGGCAGGACCGCA	chr10:7830069-7830322(+)$1	253	166	192	23.0293
GAGAGGUCCCUCAUAUGUCUGGGUCC	chr16:619212-619558(+)$1	346	196	222	16.2841
GCUGCAGGUUGAAUCCGGGGUGCCUU	chr19:36139151-36139406(+)$1	255	125	151	23.3240
GCUCCGAGGCAGCCACUUUCCCUGGA	chr22:50050350-50050595(-)$1	245	118	144	23.7941
CUUGGGGCAGAAGUGAGGUAGAGUCU	chr19:50880347-50880657(+)$1	310	120	146	20.9662
AUUAUCUUUUCAAAGGUACUUGGAUA	chr16:337422-337668(-)$1	246	173	199	23.0293
CUCUUUGCGGCGCUACACUAGAGCAG	chr2:198364907-198365159(+)$1	252	201	227	21.7721
UCUUAAGAUUUCCUCUUUCAUUCUUA	chr3:41241464-41241708(+)$1	244	213	239	21.9553
CUCCGCCCUCCCCUUUUUUCGUGCCU	chr2:68479485-68479728(-)$1	243	44	70	22.7289
CCUCUGCCUCUUGACCCCUUGGCCCC	chr12:132569358-132569623(+)$1	265	184	210	23.9619
UGCUUUUUCAGUUUCCUUGGGGAGGG	chr16:28222737-28222991(-)$1	254	55	81	23.3760
GGCGCGUCCUUGUUCUAACCCGGCGC	chr1:207494946-207495229(+)$1	283	135	161	21.9553
gagggcgcgcccuucccucccgccuc	chr22:20067756-20068007(+)$1	251	208	234	22.6270
CUUCUGCUAUAACAAUAAACUGUAGA	chr14:21484856-21485154(-)$1	298	189	215	23.0293
CCGCGUGGAAAAUAUGCGGGGCACGU	chr9:35690581-35690874(-)$1	293	170	196	23.0293
CUACGGCGACUGUAUCUUUGGCCGAG	chr17:28443826-28444122(+)$1	296	97	123	22.8734
CGGGGUUCGGGAAGGGCAAGCGGAGC	chr6:151187488-151187747(+)$1	259	125	151	22.2738
ACGGGGGCUAGGUGGGCAGGGGCUGC	chr9:140348891-140349150(-)$1	259	183	209	22.2718
GCAGCGGCCGGGCAGUUUGAGGCCGC	chr6:146135599-146135941(-)$1	342	263	289	18.9204
CCCACUCUAGAGGAGCUGAAAGUAGA	chr9:124921805-124922105(-)$1	300	170	196	22.0964
GGAGGAAAAUAAACAAUUUUACUUUU	chr17:57918267-57918530(+)$1	263	154	180	17.0280
CGGUGCUUACAGCCUGAGAAGAGCGU	chr5:141488282-141488530(+)$1	248	92	118	23.8099
CCGGCCUGGAGGGGAGAAAGAGGAAG	chr15:59280207-59280498(+)$1	291	123	149	23.6562
uuaggcucugcaagauCAACCGAGCA	chr19:46142205-46142547(-)$1	342	235	261	23.6417
AGACAGCUGGAGGAGAUAAACAGAGG	chr1:27561068-27561388(+)$1	320	73	99	23.5058
AACGUUGUUUGGAGAAAGGUAGCGCC	chr4:38666236-38666544(+)$1	308	258	284	22.4583

#DB
((.((((((............)))))	chr1:2122050-2122276(-)$1	1	86	112	22.3176
(.(((((((...........))))))	chr20:62572803-62573055(-)$1	1	184	210	23.0495
))(.(((((...........))))).	chr14:57734898-57735166(-)$1	1	36	62	22.0830
(((((((((...........))))).	chr19:19739149-19739413(-)$1	1	110	136	22.5211
(.(((((((...........)).)))	chr1:39491941-39492172(+)$1	1	118	144	21.4892
..((.(((..............))).	chr5:132202258-132202481(+)$1	1	181	207	22.8384
.((...(((............)))..	chr1:2122119-2122346(-)$1	1	14	40	23.4267
(((.((((............))))..	chr1:27480982-27481235(-)$1	1	91	117	23.1100
))..(((((............)))))	chrX:47442721-47443001(+)$1	1	163	189	20.7701
))))((((..............))))	chr22:20105341-20105590(+)$1	1	196	222	19.9358
((((((((............)).)))	chr5:126112813-126113060(+)$1	1	20	46	21.4993
(((((((((................)	chr17:46657127-46657350(-)$1	1	76	102	19.5697
..((((((............))))))	chr6:32157447-32157877(-)$1	1	111	137	20.2218
.....((((...........))))..	chr11:75161658-75161918(-)$1	1	109	135	20.1725
))(((((((...........))))))	chr5:175954572-175954827(-)$1	1	148	174	22.8578
((.((((.............))))))	chr17:28443922-28444197(+)$1	1	1	27	21.6690
.((((((((............)))))	chr19:18433728-18434003(-)$1	1	65	91	23.7829
...(((..............)))...	chr10:106014819-106015081(+)$1	1	193	219	22.4236
((((((..............)))...	chr11:64846067-64846321(-)$1	1	204	230	21.4140
(((((((((..............)))	chr2:26256923-26257202(+)$1	1	91	117	21.9472
)))(((((.............)))))	chr8:144678735-144678984(-)$1	1	62	88	19.6380
.((((..((.............))..	chr19:50880598-50880841(+)$1	1	15	41	21.5999
(((((((..............)))))	chr10:7830069-7830322(+)$1	1	166	192	23.0293
.(.(((.(((..........))).))	chr16:619212-619558(+)$1	1	196	222	16.2841
.(((.((((............)))).	chr19:36139151-36139406(+)$1	1	125	151	23.3240
(((((.(((...........))))))	chr22:50050350-50050595(-)$1	1	118	144	23.7941
((((((((..............))))	chr19:50880347-50880657(+)$1	1	120	146	20.9662
(((((((..............)))))	chr16:337422-337668(-)$1	1	173	199	23.0293
..((((((..............))))	chr2:198364907-198365159(+)$1	1	201	227	21.7721
((((((((.............)))))	chr3:41241464-41241708(+)$1	1	213	239	21.9553
(...((.(............).))..	chr2:68479485-68479728(-)$1	1	44	70	22.7289
(....(((............)))...	chr12:132569358-132569623(+)$1	1	184	210	23.9619
(((((((((...........))))))	chr16:28222737-28222991(-)$1	1	55	81	23.3760
((((((((.............)))))	chr1:207494946-207495229(+)$1	1	135	161	21.9553
(((((.(((...........)))..)	chr22:20067756-20068007(+)$1	1	208	234	22.6270
(((((((..............)))))	chr14:21484856-21485154(-)$1	1	189	215	23.0293
(((((((..............)))))	chr9:35690581-35690874(-)$1	1	170	196	23.0293
((.((((.............))))..	chr17:28443826-28444122(+)$1	1	97	123	22.8734
((((.((((...........)))).)	chr6:151187488-151187747(+)$1	1	125	151	22.2738
((((.((((...........)))).)	chr9:140348891-140349150(-)$1	1	183	209	22.2718
...((((((...........))))))	chr6:146135599-146135941(-)$1	1	263	289	18.9204
((((.((((.............))))	chr9:124921805-124922105(-)$1	1	170	196	22.0964
(((((((((...............))	chr17:57918267-57918530(+)$1	1	154	180	17.0280
.(((((((............))))))	chr5:141488282-141488530(+)$1	1	92	118	23.8099
((..(((.............)))...	chr15:59280207-59280498(+)$1	1	123	149	23.6562
((..((((.............)))).	chr19:46142205-46142547(-)$1	1	235	261	23.6417
...(..(((...........)))..)	chr1:27561068-27561388(+)$1	1	73	99	23.5058
..((.((((...........)))).)	chr4:38666236-38666544(+)$1	1	258	284	22.4583

#PSSM
g : 0.12	[ : 0.12	c : 0.10	h : 0.10	e : 0.08	b : 0.08	! : 0.06	= : 0.04	: : 0.04	" : 0.04	i : 0.04	d : 0.04	f : 0.04	G : 0.02	$ : 0.02	I : 0.02	
g : 0.14	c : 0.12	h : 0.10	b : 0.06	! : 0.06	e : 0.06	" : 0.06	[ : 0.04	= : 0.04	: : 0.04	a : 0.04	i : 0.04	d : 0.04	f : 0.04	G : 0.02	$ : 0.02	I : 0.02	# : 0.02	
g : 0.20	[ : 0.08	e : 0.08	b : 0.08	h : 0.08	f : 0.06	" : 0.06	c : 0.04	: : 0.04	= : 0.04	i : 0.04	! : 0.04	a : 0.02	G : 0.02	$ : 0.02	I : 0.02	d : 0.02	# : 0.02	
g : 0.20	f : 0.10	e : 0.10	c : 0.08	b : 0.06	d : 0.06	h : 0.06	[ : 0.04	" : 0.04	= : 0.04	i : 0.04	! : 0.04	: : 0.02	G : 0.02	$ : 0.02	# : 0.02	a : 0.02	
g : 0.18	e : 0.14	[ : 0.12	d : 0.12	f : 0.08	c : 0.08	h : 0.06	= : 0.04	i : 0.04	" : 0.02	$ : 0.02	b : 0.02	# : 0.02	! : 0.02	
d : 0.22	g : 0.16	e : 0.12	c : 0.12	f : 0.08	h : 0.06	= : 0.04	i : 0.04	! : 0.04	[ : 0.04	" : 0.02	b : 0.02	
d : 0.22	g : 0.16	c : 0.14	e : 0.10	f : 0.08	h : 0.06	= : 0.04	w : 0.04	i : 0.04	[ : 0.04	b : 0.02	! : 0.02	
d : 0.18	c : 0.14	w : 0.12	f : 0.08	g : 0.08	e : 0.08	b : 0.06	v : 0.06	h : 0.06	= : 0.04	i : 0.04	a : 0.02	
w : 0.20	v : 0.14	u : 0.12	d : 0.12	c : 0.10	g : 0.06	e : 0.06	f : 0.04	b : 0.04	= : 0.04	i : 0.04	
t : 0.29	u : 0.22	w : 0.22	v : 0.18	y : 0.02	c : 0.02	x : 0.02	
t : 0.29	u : 0.22	w : 0.22	v : 0.18	y : 0.02	s : 0.02	x : 0.02	
t : 0.29	u : 0.22	w : 0.22	v : 0.18	y : 0.02	s : 0.02	x : 0.02	
t : 0.29	u : 0.22	w : 0.22	v : 0.18	y : 0.02	s : 0.02	x : 0.02	
t : 0.29	u : 0.22	w : 0.22	v : 0.18	y : 0.02	s : 0.02	x : 0.02	
t : 0.29	u : 0.22	w : 0.22	v : 0.18	y : 0.02	s : 0.02	x : 0.02	
t : 0.29	u : 0.22	w : 0.22	v : 0.18	y : 0.02	s : 0.02	x : 0.02	
t : 0.29	u : 0.22	w : 0.22	v : 0.18	y : 0.02	s : 0.02	x : 0.02	
t : 0.29	u : 0.22	w : 0.22	v : 0.18	y : 0.02	s : 0.02	x : 0.02	
t : 0.29	u : 0.22	w : 0.22	v : 0.18	y : 0.02	s : 0.02	x : 0.02	
t : 0.29	u : 0.22	w : 0.22	v : 0.18	y : 0.02	s : 0.02	x : 0.02	
w : 0.18	c : 0.16	d : 0.14	v : 0.12	u : 0.10	g : 0.06	e : 0.04	b : 0.04	f : 0.04	y : 0.02	a : 0.02	= : 0.02	x : 0.02	
c : 0.18	d : 0.18	g : 0.16	w : 0.10	e : 0.08	f : 0.06	b : 0.04	v : 0.04	h : 0.04	y : 0.02	] : 0.02	= : 0.02	x : 0.02	
d : 0.22	c : 0.20	g : 0.16	f : 0.08	e : 0.08	h : 0.06	] : 0.04	b : 0.04	y : 0.02	w : 0.02	= : 0.02	x : 0.02	
d : 0.22	g : 0.18	e : 0.12	f : 0.08	3 : 0.06	h : 0.06	c : 0.04	b : 0.04	2 : 0.04	y : 0.02	4 : 0.02	i : 0.02	] : 0.02	= : 0.02	x : 0.02	
g : 0.18	e : 0.12	2 : 0.10	3 : 0.10	f : 0.08	d : 0.08	h : 0.06	] : 0.06	c : 0.04	i : 0.04	y : 0.02	5 : 0.02	b : 0.02	4 : 0.02	= : 0.02	
g : 0.18	e : 0.12	f : 0.10	3 : 0.10	] : 0.08	2 : 0.08	h : 0.06	d : 0.04	= : 0.04	b : 0.04	i : 0.04	5 : 0.02	4 : 0.02	c : 0.02	a : 0.02	

#score	1055.737399611059
#seq	48
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_CDS_m3_run1.txt

#BEAR
===========================	chr19:47774830-47775201(+)$1	371	121	148	10.3767
!!dddd[ddddnnnnndddddddd22b	chr16:67697490-67697776(-)$1	286	33	60	9.7469
d"""gggggggooooooggggggg]dd	chr13:45911523-45911742(-)$1	219	125	152	8.7009
ggggg####bboooooobb333ggggg	chr2:216296460-216296708(-)$1	248	201	228	9.7962
=========bbmmmmbb]=========	chr22:20113864-20114092(+)$1	228	169	196	12.3210
eedddd[ddddllldddd]dddd333e	chr22:39715011-39715218(-)$1	207	121	148	11.3756
======[ddddmmmmdddd333=====	chr2:216245665-216245903(-)$1	238	162	189	12.3083
iiiiii[ddddnnnnnddddiiiiiii	chr4:78740050-78740329(-)$1	279	49	76	10.5458
[ccc!!bb[bblllbb]bb22ccc]ee	chr2:216232497-216232746(-)$1	249	7	34	8.8920
$$dddd[cccmmmmccc]dddd4444e	chr13:45911576-45911786(-)$1	210	8	35	9.2962
fffff[ddddbbmmmmbb]dddd333f	chr13:45911554-45911761(-)$1	207	165	192	9.4241
eedddd[ddddllldddd]dddd333e	chr22:39714964-39715196(-)$1	232	99	126	11.3756
ggccc!!ddddmmmmdddd22ccc22g	chrX:132887566-132887830(-)$1	264	85	112	10.9408
iiiiiiieeeeellleeeeeggggggg	chrX:132887960-132888191(-)$1	231	80	107	8.7785
====="""ccclllccc]=========	chr22:20113892-20114101(+)$1	209	156	183	12.6381
=========bbmmmmbb]=========	chr22:20113854-20114064(+)$1	210	179	206	12.3210
====="""ccclllccc]=========	chr22:20113901-20114129(+)$1	228	147	174	12.6381
!dddd[bb[bbmmmmbb]bbdddd22a	chr3:58106872-58107167(+)$1	295	202	229	9.6721
ddd[dddd[cccmmmmccc]dddd]dd	chr2:216296512-216296731(-)$1	219	159	186	8.6273
edddd[ddddbbmmmmbb]dddd333d	chr13:45911542-45911754(-)$1	212	158	185	10.1968

#otherMatches

#Seq PSSM
gugugugugugugugugugugugugug	chr19:47774830-47775201(+)$1	371	121	148	10.3767
ACGCUUGCUGUGUCCUGCAGGAGCCAG	chr16:67697490-67697776(-)$1	286	33	60	9.7469
UCUUUAGCCUGGAAAUGUAGGCUGCAU	chr13:45911523-45911742(-)$1	219	125	152	8.7009
GUGGGGUUGGACCAGAAUCACAUCUAC	chr2:216296460-216296708(-)$1	248	201	228	9.7962
CCCUGGGGACACAGGUGCUUCCUGGGG	chr22:20113864-20114092(+)$1	228	169	196	12.3210
CGGGCGGACAGAAACUGUGUGCUGAUU	chr22:39715011-39715218(-)$1	207	121	148	11.3756
UGGGAAAGCCCACAGGGGCAAGUUUCC	chr2:216245665-216245903(-)$1	238	162	189	12.3083
GGGGCGGCGGGGCUGACCCGCGUCUCU	chr4:78740050-78740329(-)$1	279	49	76	10.5458
UUGAACCAACCUACGGAUGACUCGUGC	chr2:216232497-216232746(-)$1	249	7	34	8.8920
AAAAAUGAGCUACCGCUGAUUUGGUAA	chr13:45911576-45911786(-)$1	210	8	35	9.2962
CUGCAUGUUAAUGGUAAUGUAACUUUU	chr13:45911554-45911761(-)$1	207	165	192	9.4241
CGGGCGGACAGAAACUGUGUGCUGAUU	chr22:39714964-39715196(-)$1	232	99	126	11.3756
CAGGGACUGAUGAUGGUUAAACCCUGU	chrX:132887566-132887830(-)$1	264	85	112	10.9408
UUUGUGGGUGAAUUUUUCACAGAUGUG	chrX:132887960-132888191(-)$1	231	80	107	8.7785
UGCUUCCUGGGGAGCCCUGAGCACUUG	chr22:20113892-20114101(+)$1	209	156	183	12.6381
CCCUGGGGACACAGGUGCUUCCUGGGG	chr22:20113854-20114064(+)$1	210	179	206	12.3210
UGCUUCCUGGGGAGCCCUGAGCACUUG	chr22:20113901-20114129(+)$1	228	147	174	12.6381
UGCCUAGUGACACCUGUGACAGGCCGG	chr3:58106872-58107167(+)$1	295	202	229	9.6721
GACCUGCAAGCCCAUAGGUGUGUGAGU	chr2:216296512-216296731(-)$1	219	159	186	8.6273
CUGCAUGUUAAUGGUAAUGUAACUUUU	chr13:45911542-45911754(-)$1	212	158	185	10.1968

#DB
(((((((((((((((((((((((((((	chr19:47774830-47775201(+)$1	1	121	148	10.3767
..((((.((((.....))))))))..)	chr16:67697490-67697776(-)$1	1	33	60	9.7469
(...(((((((......))))))).))	chr13:45911523-45911742(-)$1	1	125	152	8.7009
(((((....((......))...)))))	chr2:216296460-216296708(-)$1	1	201	228	9.7962
(((((((((((....)).)))))))))	chr22:20113864-20114092(+)$1	1	169	196	12.3210
((((((.((((...)))).))))...)	chr22:39715011-39715218(-)$1	1	121	148	11.3756
((((((.((((....))))...)))))	chr2:216245665-216245903(-)$1	1	162	189	12.3083
((((((.((((.....)))))))))))	chr4:78740050-78740329(-)$1	1	49	76	10.5458
.(((..((.((...)).))..))).))	chr2:216232497-216232746(-)$1	1	7	34	8.8920
..((((.(((....))).))))....)	chr13:45911576-45911786(-)$1	1	8	35	9.2962
(((((.((((((....)).))))...)	chr13:45911554-45911761(-)$1	1	165	192	9.4241
((((((.((((...)))).))))...)	chr22:39714964-39715196(-)$1	1	99	126	11.3756
(((((..((((....))))..)))..)	chrX:132887566-132887830(-)$1	1	85	112	10.9408
)))))))(((((...)))))(((((((	chrX:132887960-132888191(-)$1	1	80	107	8.7785
(((((...(((...))).)))))))))	chr22:20113892-20114101(+)$1	1	156	183	12.6381
(((((((((((....)).)))))))))	chr22:20113854-20114064(+)$1	1	179	206	12.3210
(((((...(((...))).)))))))))	chr22:20113901-20114129(+)$1	1	147	174	12.6381
.((((.((.((....)).))))))..)	chr3:58106872-58107167(+)$1	1	202	229	9.6721
(((.((((.(((....))).)))).))	chr2:216296512-216296731(-)$1	1	159	186	8.6273
)((((.((((((....)).))))...)	chr13:45911542-45911754(-)$1	1	158	185	10.1968

#PSSM
= : 0.30	e : 0.15	! : 0.10	d : 0.10	g : 0.10	i : 0.10	[ : 0.05	$ : 0.05	f : 0.05	
= : 0.30	d : 0.15	g : 0.10	e : 0.10	i : 0.10	! : 0.05	" : 0.05	c : 0.05	$ : 0.05	f : 0.05	
d : 0.35	= : 0.30	i : 0.10	c : 0.10	" : 0.05	g : 0.05	f : 0.05	
= : 0.30	d : 0.30	i : 0.10	c : 0.10	" : 0.05	g : 0.05	f : 0.05	[ : 0.05	
d : 0.35	= : 0.30	g : 0.10	i : 0.10	! : 0.05	f : 0.05	c : 0.05	
d : 0.25	= : 0.20	[ : 0.15	i : 0.10	! : 0.10	" : 0.10	g : 0.05	# : 0.05	
[ : 0.30	= : 0.15	d : 0.15	b : 0.10	" : 0.10	g : 0.05	# : 0.05	! : 0.05	i : 0.05	
d : 0.44	= : 0.15	b : 0.10	" : 0.10	g : 0.05	# : 0.05	c : 0.05	e : 0.05	
d : 0.39	= : 0.15	[ : 0.15	c : 0.15	g : 0.05	# : 0.05	e : 0.05	
d : 0.39	b : 0.25	c : 0.20	= : 0.05	g : 0.05	e : 0.05	
b : 0.35	d : 0.30	c : 0.15	= : 0.05	g : 0.05	m : 0.05	e : 0.05	
m : 0.30	l : 0.25	n : 0.10	o : 0.10	b : 0.10	= : 0.05	e : 0.05	c : 0.05	
m : 0.44	l : 0.30	n : 0.10	o : 0.10	= : 0.05	
m : 0.44	l : 0.30	n : 0.10	o : 0.10	= : 0.05	
m : 0.39	c : 0.15	n : 0.10	o : 0.10	d : 0.10	= : 0.05	b : 0.05	l : 0.05	
b : 0.20	d : 0.20	c : 0.15	m : 0.15	n : 0.10	o : 0.10	= : 0.05	e : 0.05	
d : 0.30	b : 0.25	c : 0.20	o : 0.10	= : 0.05	] : 0.05	e : 0.05	
d : 0.30	] : 0.30	b : 0.20	= : 0.05	g : 0.05	e : 0.05	c : 0.05	
= : 0.25	d : 0.25	] : 0.20	b : 0.15	g : 0.05	e : 0.05	c : 0.05	
d : 0.35	= : 0.25	3 : 0.10	2 : 0.10	g : 0.05	e : 0.05	b : 0.05	] : 0.05	
d : 0.39	= : 0.25	g : 0.10	3 : 0.10	2 : 0.10	i : 0.05	
d : 0.39	= : 0.25	g : 0.10	3 : 0.10	c : 0.10	i : 0.05	
d : 0.35	= : 0.30	g : 0.15	c : 0.10	i : 0.05	4 : 0.05	
= : 0.30	3 : 0.20	d : 0.15	g : 0.15	c : 0.10	i : 0.05	4 : 0.05	
= : 0.30	3 : 0.20	2 : 0.15	] : 0.15	g : 0.10	i : 0.05	4 : 0.05	
= : 0.30	3 : 0.20	2 : 0.15	d : 0.10	g : 0.10	i : 0.05	e : 0.05	4 : 0.05	
= : 0.30	e : 0.20	d : 0.15	g : 0.15	b : 0.05	i : 0.05	f : 0.05	a : 0.05	

#score	209.97281064845495
#seq	20
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_CDS_m2_run2.txt

#BEAR
eee####dddd[a"""bbbb[ccc[bb!!ccc"""dddd[	chr7:104752716-104752963(-)$1	247	97	137	22.6466
==========="""eeeee!!ccc"""cccmmmmcccccc	chr14:39736596-39736844(+)$1	248	52	92	22.4188
iiiiiiii[bb[a!!dddd[dddd####bb[ccc####ff	chr7:6071044-6071332(-)$1	288	164	204	23.8134

#otherMatches

#Seq PSSM
ACGAAGAAGGAGGUGGAGGAGGUGGAGGGGGUGGUGCCGU	chr7:104752716-104752963(-)$1	247	97	137	22.6466
AGCAGCUUUGGCGCUAUGGAGGAGCCCGGGGUUACCCCUC	chr14:39736596-39736844(+)$1	248	52	92	22.4188
GUUGACAGGGUGAUUUCUCAGGAGUACCUCGAUCGUAGUG	chr7:6071044-6071332(-)$1	288	164	204	23.8134

#DB
(((....((((.(...((((.(((.((..(((...((((.	chr7:104752716-104752963(-)$1	1	97	137	22.6466
(((((((((((...(((((..(((...(((....))))))	chr14:39736596-39736844(+)$1	1	52	92	22.4188
((((((((.((.(..((((.((((....((.(((....((	chr7:6071044-6071332(-)$1	1	164	204	23.8134

#PSSM
e : 0.33	= : 0.33	i : 0.33	
e : 0.33	= : 0.33	i : 0.33	
e : 0.33	= : 0.33	i : 0.33	
# : 0.33	= : 0.33	i : 0.33	
# : 0.33	= : 0.33	i : 0.33	
# : 0.33	= : 0.33	i : 0.33	
# : 0.33	= : 0.33	i : 0.33	
d : 0.33	= : 0.33	i : 0.33	
d : 0.33	= : 0.33	[ : 0.33	
d : 0.33	= : 0.33	b : 0.33	
d : 0.33	= : 0.33	b : 0.33	
[ : 0.66	" : 0.33	
a : 0.66	" : 0.33	
" : 0.66	! : 0.33	
" : 0.33	e : 0.33	! : 0.33	
" : 0.33	e : 0.33	d : 0.33	
b : 0.33	e : 0.33	d : 0.33	
b : 0.33	e : 0.33	d : 0.33	
b : 0.33	e : 0.33	d : 0.33	
b : 0.33	! : 0.33	[ : 0.33	
[ : 0.33	! : 0.33	d : 0.33	
c : 0.66	d : 0.33	
c : 0.66	d : 0.33	
c : 0.66	d : 0.33	
[ : 0.33	" : 0.33	# : 0.33	
b : 0.33	" : 0.33	# : 0.33	
b : 0.33	" : 0.33	# : 0.33	
! : 0.33	c : 0.33	# : 0.33	
! : 0.33	c : 0.33	b : 0.33	
c : 0.66	b : 0.33	
c : 0.33	m : 0.33	[ : 0.33	
c : 0.66	m : 0.33	
" : 0.33	m : 0.33	c : 0.33	
" : 0.33	m : 0.33	c : 0.33	
" : 0.33	c : 0.33	# : 0.33	
d : 0.33	c : 0.33	# : 0.33	
d : 0.33	c : 0.33	# : 0.33	
d : 0.33	c : 0.33	# : 0.33	
d : 0.33	c : 0.33	f : 0.33	
[ : 0.33	c : 0.33	f : 0.33	

#score	68.87888200196669
#seq	3
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_CDS_m1_run1.txt

#BEAR
b[ccc^^^^^^^^^^^^^^^^^^^^^ccc333b	chrM:13717-13923(+)$1	206	10	43	40.2687
^^^^^^^^^^^^^^^^^^^^^^^^^^ccc22ee	chrM:10836-11050(+)$1	214	44	77	40.0894
b[ccc^^^^^^^^^^^^^^^^^^^^^ccc333b	chrM:13610-13813(+)$1	203	117	150	40.2687
bbccc^^^^^^^^^^^^^^^^^^^^^ccc]bb]	chr1:82452483-82452756(+)$1	273	147	180	37.7779
c^^^^^^^^^^^^^^^^^^^^^^^^^ccc22a]	chr13:111811204-111811520(+)$1	316	97	130	40.1598
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:13751-13965(+)$1	214	173	206	38.3593
ccccc^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr7:158545387-158545701(-)$1	314	158	191	40.7321
b^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10974-11179(+)$1	205	125	158	41.9230
b^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:118759168-118759462(-)$1	294	208	241	41.9230
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13729-13936(+)$1	207	5	38	42.1078
ccc[bb^^^^^^^^^^^^^^^^^^bbccc22dd	chrM:7631-7838(+)$1	207	70	103	34.1426
c[dddd^^^^^^^^^^^^^^^^^^^^dddd]cc	chr1:62970341-62970686(-)$1	345	110	143	35.0642
eeccc^^^^^^^^^^^^^^^^^^^^^ccc22ee	chr5:34813513-34813803(+)$1	290	161	194	38.7951
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:9251-9468(+)$1	217	53	86	38.3593
eeeee^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrX:47058059-47058310(+)$1	251	36	69	36.9496
c[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc	chrM:8573-8778(+)$1	205	100	133	35.2291
b[ccc^^^^^^^^^^^^^^^^^^^^^ccc333b	chrM:13634-13838(+)$1	204	93	126	40.2687
ccc[bb^^^^^^^^^^^^^^^^^^bbccc22dd	chrM:7627-7831(+)$1	204	74	107	34.1426
b[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:22416289-22416587(+)$1	298	223	256	41.4622
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:9218-9431(+)$1	213	86	119	38.3593
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb	chrM:13666-13872(+)$1	206	61	94	39.8021
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb	chrM:13679-13887(+)$1	208	48	81	39.8021
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb	chrM:13712-13917(+)$1	205	15	48	39.8021
ggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr5:14489001-14489273(+)$1	272	81	114	40.2145
Ddddd^^^^^^^^^^^^^^^^^^^^^^^dddd:	chr9:95155235-95155593(+)$1	358	253	286	35.4601
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb	chrM:13687-13896(+)$1	209	40	73	39.8021
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13563-13766(+)$1	203	75	108	42.1078
c[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc	chrM:8559-8762(+)$1	203	114	147	35.2291
b[ccc^^^^^^^^^^^^^^^^^^^^^ccc333b	chrM:13556-13763(+)$1	207	171	204	40.2687
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb	chrM:13647-13849(+)$1	202	80	113	39.8021
ffff[bb^^^^^^^^^^^^^^^^^^^bb]ffff	chr19:4423152-4423441(+)$1	289	217	250	32.2954
""ccc^^^^^^^^^^^^^^^^^^^^^ccc5555	chr10:24834765-24835019(+)$1	254	117	150	37.7623
c^^^^^^^^^^^^^^^^^^^^^^^^^ccc]ccc	chr12:32520433-32520718(+)$1	285	112	145	39.5220
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13591-13795(+)$1	204	47	80	42.1078
c[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc	chrM:8562-8767(+)$1	205	111	144	35.2291
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13516-13732(+)$1	216	122	155	42.1078
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13581-13785(+)$1	204	57	90	42.1078
b^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10979-11217(+)$1	238	120	153	41.9230
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:9247-9451(+)$1	204	57	90	38.3593
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13595-13800(+)$1	205	43	76	42.1078
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13532-13756(+)$1	224	106	139	42.1078
b^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10967-11174(+)$1	207	132	165	41.9230
c[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc	chrM:8556-8759(+)$1	203	117	150	35.2291
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13573-13776(+)$1	203	65	98	42.1078
b[ccc^^^^^^^^^^^^^^^^^^^^^ccc333b	chrM:13613-13834(+)$1	221	114	147	40.2687
b^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10941-11167(+)$1	226	158	191	41.9230
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb	chrM:13703-13912(+)$1	209	24	57	39.8021
fffff^^^^^^^^^^^^^^^^^^^^^^ffffff	chr6:168294450-168294705(+)$1	255	107	140	36.0788
^^^^^^^^^^^^^^^^^^^^^^^^^^ccc22ee	chrM:10803-11036(+)$1	233	77	110	40.0894
ccc[bb^^^^^^^^^^^^^^^^^^bbccc22dd	chrM:7640-7842(+)$1	202	61	94	34.1426
c[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc	chrM:8578-8781(+)$1	203	95	128	35.2291
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb	chrM:13672-13879(+)$1	207	55	88	39.8021
c[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc	chrM:8567-8773(+)$1	206	106	139	35.2291
b[ccc^^^^^^^^^^^^^^^^^^^^^^^ccc]b	chr14:54902719-54903023(-)$1	304	139	172	39.2942
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb	chrM:13649-13856(+)$1	207	78	111	39.8021
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb	chrM:13697-13903(+)$1	206	30	63	39.8021
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13600-13810(+)$1	210	38	71	42.1078
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13585-13791(+)$1	206	53	86	42.1078
c[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc	chrM:8513-8756(+)$1	243	160	193	35.2291
=====^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:53511992-53512237(+)$1	245	86	119	40.5829
""ccc^^^^^^^^^^^^^^^^^^^^^ccc5555	chr10:24834819-24835125(+)$1	306	63	96	37.7623
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:9231-9447(+)$1	216	73	106	38.3593
b[ccc^^^^^^^^^^^^^^^^^^^^^ccc333b	chrM:13723-13927(+)$1	204	4	37	40.2687
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13577-13781(+)$1	204	61	94	42.1078
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13566-13773(+)$1	207	72	105	42.1078
b[ccc^^^^^^^^^^^^^^^^^^^^^ccc333b	chrM:13640-13847(+)$1	207	87	120	40.2687
g!!bb^^^^^^^^^^^^^^^^^^^^^bb22ggg	chr19:11339955-11340196(-)$1	241	17	50	36.8706
b[ccc^^^^^^^^^^^^^^^^^^^^^ccc333b	chrM:13638-13840(+)$1	202	89	122	40.2687

#otherMatches

#Seq PSSM
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13717-13923(+)$1	206	10	43	40.2687
UUUUUUAACCAAAUCAACAACAACCUAUUUAGC	chrM:10836-11050(+)$1	214	44	77	40.0894
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13610-13813(+)$1	203	117	150	40.2687
CGGCACUAACAACCCCUAUAACACAUUGCUCGC	chr1:82452483-82452756(+)$1	273	147	180	37.7779
acuaaaauuuauuccucccguccgacugaaauu	chr13:111811204-111811520(+)$1	316	97	130	40.1598
CCUAGCAUCACACACCGCACAAUCCCCUAUCUA	chrM:13751-13965(+)$1	214	173	206	38.3593
ACUUGAAAGAGUAACCCAUUAGAAUUUAACCCC	chr7:158545387-158545701(-)$1	314	158	191	40.7321
GAACUAAUCAUAUUUUAUAUCUUCUUCGAAACC	chrM:10974-11179(+)$1	205	125	158	41.9230
AACAUAUCUCCCCCAAUCCCGCACCCCCAACAC	chrX:118759168-118759462(-)$1	294	208	241	41.9230
UCUCAUUACUAACAACAUUUCCCCCGCAUCCCC	chrM:13729-13936(+)$1	207	5	38	42.1078
UGUAUGCCCUUUUCCUAACACUCACAACAAAAC	chrM:7631-7838(+)$1	207	70	103	34.1426
uuguCCUAACCAUUCUUUUAAUUUCUGGGCUAU	chr1:62970341-62970686(-)$1	345	110	143	35.0642
UCAGCAUGACCAAGUCUCUAAAAUAAGCUCAGA	chr5:34813513-34813803(+)$1	290	161	194	38.7951
UGUGAUUUCACUUCCACUCCAUAACGCUCCUCA	chrM:9251-9468(+)$1	217	53	86	38.3593
ggggguacuaauacuuaagucuucccuuccccc	chrX:47058059-47058310(+)$1	251	36	69	36.9496
AAUCAAACUAACCUCAAAACAAAUGAUAGCCAU	chrM:8573-8778(+)$1	205	100	133	35.2291
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13634-13838(+)$1	204	93	126	40.2687
UGUAUGCCCUUUUCCUAACACUCACAACAAAAC	chrM:7627-7831(+)$1	204	74	107	34.1426
CUGUAUAUUCUAAACUGUUUUCUCCUUCCCUUC	chr1:22416289-22416587(+)$1	298	223	256	41.4622
UGUGAUUUCACUUCCACUCCAUAACGCUCCUCA	chrM:9218-9431(+)$1	213	86	119	38.3593
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13666-13872(+)$1	206	61	94	39.8021
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13679-13887(+)$1	208	48	81	39.8021
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13712-13917(+)$1	205	15	48	39.8021
UGGGUUUUCCCUCUGUUUCCUGCUUCCUCACUG	chr5:14489001-14489273(+)$1	272	81	114	40.2145
GCCACUUAAACAAACACACAGCAGACACGUGGG	chr9:95155235-95155593(+)$1	358	253	286	35.4601
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13687-13896(+)$1	209	40	73	39.8021
ACCUCGCUUCCCCACCCUUACUAACAUUAACGA	chrM:13563-13766(+)$1	203	75	108	42.1078
AAUCAAACUAACCUCAAAACAAAUGAUAGCCAU	chrM:8559-8762(+)$1	203	114	147	35.2291
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13556-13763(+)$1	207	171	204	40.2687
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13647-13849(+)$1	202	80	113	39.8021
AACGGUUAAGAGAAGAAGAGAAGGUAGAGUGUU	chr19:4423152-4423441(+)$1	289	217	250	32.2954
ACAGCUCUAACCUCCCUAAUCCACCUGCUACUA	chr10:24834765-24835019(+)$1	254	117	150	37.7623
CUAACACCUUGCUCUGUCAUCUCUUUGUACACA	chr12:32520433-32520718(+)$1	285	112	145	39.5220
ACCUCGCUUCCCCACCCUUACUAACAUUAACGA	chrM:13591-13795(+)$1	204	47	80	42.1078
AAUCAAACUAACCUCAAAACAAAUGAUAGCCAU	chrM:8562-8767(+)$1	205	111	144	35.2291
ACCUCGCUUCCCCACCCUUACUAACAUUAACGA	chrM:13516-13732(+)$1	216	122	155	42.1078
ACCUCGCUUCCCCACCCUUACUAACAUUAACGA	chrM:13581-13785(+)$1	204	57	90	42.1078
GAACUAAUCAUAUUUUAUAUCUUCUUCGAAACC	chrM:10979-11217(+)$1	238	120	153	41.9230
UGUGAUUUCACUUCCACUCCAUAACGCUCCUCA	chrM:9247-9451(+)$1	204	57	90	38.3593
ACCUCGCUUCCCCACCCUUACUAACAUUAACGA	chrM:13595-13800(+)$1	205	43	76	42.1078
ACCUCGCUUCCCCACCCUUACUAACAUUAACGA	chrM:13532-13756(+)$1	224	106	139	42.1078
GAACUAAUCAUAUUUUAUAUCUUCUUCGAAACC	chrM:10967-11174(+)$1	207	132	165	41.9230
AAUCAAACUAACCUCAAAACAAAUGAUAGCCAU	chrM:8556-8759(+)$1	203	117	150	35.2291
ACCUCGCUUCCCCACCCUUACUAACAUUAACGA	chrM:13573-13776(+)$1	203	65	98	42.1078
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13613-13834(+)$1	221	114	147	40.2687
GAACUAAUCAUAUUUUAUAUCUUCUUCGAAACC	chrM:10941-11167(+)$1	226	158	191	41.9230
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13703-13912(+)$1	209	24	57	39.8021
UGCCUACUACAACUAUCACACUUACGAAGGUAA	chr6:168294450-168294705(+)$1	255	107	140	36.0788
UUUUUUAACCAAAUCAACAACAACCUAUUUAGC	chrM:10803-11036(+)$1	233	77	110	40.0894
UGUAUGCCCUUUUCCUAACACUCACAACAAAAC	chrM:7640-7842(+)$1	202	61	94	34.1426
AAUCAAACUAACCUCAAAACAAAUGAUAGCCAU	chrM:8578-8781(+)$1	203	95	128	35.2291
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13672-13879(+)$1	207	55	88	39.8021
AAUCAAACUAACCUCAAAACAAAUGAUAGCCAU	chrM:8567-8773(+)$1	206	106	139	35.2291
UAACAUUCUUCCAAUCUGCUUUUUACAUUGUCG	chr14:54902719-54903023(-)$1	304	139	172	39.2942
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13649-13856(+)$1	207	78	111	39.8021
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13697-13903(+)$1	206	30	63	39.8021
ACCUCGCUUCCCCACCCUUACUAACAUUAACGA	chrM:13600-13810(+)$1	210	38	71	42.1078
ACCUCGCUUCCCCACCCUUACUAACAUUAACGA	chrM:13585-13791(+)$1	206	53	86	42.1078
AAUCAAACUAACCUCAAAACAAAUGAUAGCCAU	chrM:8513-8756(+)$1	243	160	193	35.2291
caccucugcccucugcccuugcccuuacuaauc	chr12:53511992-53512237(+)$1	245	86	119	40.5829
ACAGCUCUAACCUCCCUAAUCCACCUGCUACUA	chr10:24834819-24835125(+)$1	306	63	96	37.7623
UGUGAUUUCACUUCCACUCCAUAACGCUCCUCA	chrM:9231-9447(+)$1	216	73	106	38.3593
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13723-13927(+)$1	204	4	37	40.2687
ACCUCGCUUCCCCACCCUUACUAACAUUAACGA	chrM:13577-13781(+)$1	204	61	94	42.1078
ACCUCGCUUCCCCACCCUUACUAACAUUAACGA	chrM:13566-13773(+)$1	207	72	105	42.1078
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13640-13847(+)$1	207	87	120	40.2687
CUAACCUACCUCUUUUCCCCAUCCCUGUCUGUG	chr19:11339955-11340196(-)$1	241	17	50	36.8706
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13638-13840(+)$1	202	89	122	40.2687

#DB
(.(((.....................)))...)	chrM:13717-13923(+)$1	1	10	43	40.2687
..........................)))..))	chrM:10836-11050(+)$1	1	44	77	40.0894
(.(((.....................)))...)	chrM:13610-13813(+)$1	1	117	150	40.2687
(((((.....................))).)).	chr1:82452483-82452756(+)$1	1	147	180	37.7779
(.........................)))..).	chr13:111811204-111811520(+)$1	1	97	130	40.1598
(((((.........................)))	chrM:13751-13965(+)$1	1	173	206	38.3593
(((((...........................)	chr7:158545387-158545701(-)$1	1	158	191	40.7321
(................................	chrM:10974-11179(+)$1	1	125	158	41.9230
(................................	chrX:118759168-118759462(-)$1	1	208	241	41.9230
.................................	chrM:13729-13936(+)$1	1	5	38	42.1078
(((.((..................)))))..))	chrM:7631-7838(+)$1	1	70	103	34.1426
(.((((....................)))).))	chr1:62970341-62970686(-)$1	1	110	143	35.0642
(((((.....................)))..))	chr5:34813513-34813803(+)$1	1	161	194	38.7951
(((((.........................)))	chrM:9251-9468(+)$1	1	53	86	38.3593
(((((.......................)))))	chrX:47058059-47058310(+)$1	1	36	69	36.9496
(.(((..................)))))).)))	chrM:8573-8778(+)$1	1	100	133	35.2291
(.(((.....................)))...)	chrM:13634-13838(+)$1	1	93	126	40.2687
(((.((..................)))))..))	chrM:7627-7831(+)$1	1	74	107	34.1426
(.(((............................	chr1:22416289-22416587(+)$1	1	223	256	41.4622
(((((.........................)))	chrM:9218-9431(+)$1	1	86	119	38.3593
..(((.....................)))..))	chrM:13666-13872(+)$1	1	61	94	39.8021
..(((.....................)))..))	chrM:13679-13887(+)$1	1	48	81	39.8021
..(((.....................)))..))	chrM:13712-13917(+)$1	1	15	48	39.8021
(((((............................	chr5:14489001-14489273(+)$1	1	81	114	40.2145
(((((.......................)))).	chr9:95155235-95155593(+)$1	1	253	286	35.4601
..(((.....................)))..))	chrM:13687-13896(+)$1	1	40	73	39.8021
.................................	chrM:13563-13766(+)$1	1	75	108	42.1078
(.(((..................)))))).)))	chrM:8559-8762(+)$1	1	114	147	35.2291
(.(((.....................)))...)	chrM:13556-13763(+)$1	1	171	204	40.2687
..(((.....................)))..))	chrM:13647-13849(+)$1	1	80	113	39.8021
((((.((...................)).))))	chr19:4423152-4423441(+)$1	1	217	250	32.2954
..(((.....................)))....	chr10:24834765-24835019(+)$1	1	117	150	37.7623
(.........................))).)))	chr12:32520433-32520718(+)$1	1	112	145	39.5220
.................................	chrM:13591-13795(+)$1	1	47	80	42.1078
(.(((..................)))))).)))	chrM:8562-8767(+)$1	1	111	144	35.2291
.................................	chrM:13516-13732(+)$1	1	122	155	42.1078
.................................	chrM:13581-13785(+)$1	1	57	90	42.1078
(................................	chrM:10979-11217(+)$1	1	120	153	41.9230
(((((.........................)))	chrM:9247-9451(+)$1	1	57	90	38.3593
.................................	chrM:13595-13800(+)$1	1	43	76	42.1078
.................................	chrM:13532-13756(+)$1	1	106	139	42.1078
(................................	chrM:10967-11174(+)$1	1	132	165	41.9230
(.(((..................)))))).)))	chrM:8556-8759(+)$1	1	117	150	35.2291
.................................	chrM:13573-13776(+)$1	1	65	98	42.1078
(.(((.....................)))...)	chrM:13613-13834(+)$1	1	114	147	40.2687
(................................	chrM:10941-11167(+)$1	1	158	191	41.9230
..(((.....................)))..))	chrM:13703-13912(+)$1	1	24	57	39.8021
(((((......................))))))	chr6:168294450-168294705(+)$1	1	107	140	36.0788
..........................)))..))	chrM:10803-11036(+)$1	1	77	110	40.0894
(((.((..................)))))..))	chrM:7640-7842(+)$1	1	61	94	34.1426
(.(((..................)))))).)))	chrM:8578-8781(+)$1	1	95	128	35.2291
..(((.....................)))..))	chrM:13672-13879(+)$1	1	55	88	39.8021
(.(((..................)))))).)))	chrM:8567-8773(+)$1	1	106	139	35.2291
(.(((.......................))).)	chr14:54902719-54903023(-)$1	1	139	172	39.2942
..(((.....................)))..))	chrM:13649-13856(+)$1	1	78	111	39.8021
..(((.....................)))..))	chrM:13697-13903(+)$1	1	30	63	39.8021
.................................	chrM:13600-13810(+)$1	1	38	71	42.1078
.................................	chrM:13585-13791(+)$1	1	53	86	42.1078
(.(((..................)))))).)))	chrM:8513-8756(+)$1	1	160	193	35.2291
(((((............................	chr12:53511992-53512237(+)$1	1	86	119	40.5829
..(((.....................)))....	chr10:24834819-24835125(+)$1	1	63	96	37.7623
(((((.........................)))	chrM:9231-9447(+)$1	1	73	106	38.3593
(.(((.....................)))...)	chrM:13723-13927(+)$1	1	4	37	40.2687
.................................	chrM:13577-13781(+)$1	1	61	94	42.1078
.................................	chrM:13566-13773(+)$1	1	72	105	42.1078
(.(((.....................)))...)	chrM:13640-13847(+)$1	1	87	120	40.2687
(..((.....................))..)))	chr19:11339955-11340196(-)$1	1	17	50	36.8706
(.(((.....................)))...)	chrM:13638-13840(+)$1	1	89	122	40.2687

#PSSM
b : 0.23	^ : 0.20	c : 0.20	! : 0.13	e : 0.10	g : 0.02	f : 0.02	" : 0.02	D : 0.01	= : 0.01	
^ : 0.30	[ : 0.26	! : 0.14	e : 0.10	c : 0.05	f : 0.02	" : 0.02	b : 0.01	g : 0.01	d : 0.01	= : 0.01	
c : 0.50	^ : 0.30	e : 0.08	d : 0.02	f : 0.02	g : 0.01	= : 0.01	! : 0.01	
c : 0.45	^ : 0.30	e : 0.08	[ : 0.04	d : 0.02	f : 0.02	g : 0.01	= : 0.01	b : 0.01	
c : 0.45	^ : 0.30	e : 0.08	b : 0.05	d : 0.02	g : 0.01	[ : 0.01	f : 0.01	= : 0.01	
^ : 0.92	b : 0.05	d : 0.01	
^ : 0.98	b : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.89	c : 0.10	
^ : 0.85	c : 0.10	b : 0.04	
^ : 0.85	c : 0.10	b : 0.04	
c : 0.51	^ : 0.44	b : 0.02	d : 0.01	
c : 0.51	^ : 0.42	b : 0.02	d : 0.01	f : 0.01	
c : 0.52	^ : 0.38	d : 0.02	e : 0.01	] : 0.01	f : 0.01	2 : 0.01	
^ : 0.38	2 : 0.25	] : 0.13	3 : 0.11	d : 0.02	f : 0.02	5 : 0.02	e : 0.01	c : 0.01	
^ : 0.30	2 : 0.23	c : 0.13	3 : 0.11	e : 0.08	f : 0.02	5 : 0.02	b : 0.01	] : 0.01	d : 0.01	g : 0.01	
^ : 0.30	b : 0.14	e : 0.13	c : 0.13	3 : 0.11	d : 0.05	f : 0.02	5 : 0.02	a : 0.01	] : 0.01	g : 0.01	
^ : 0.29	b : 0.26	c : 0.14	e : 0.13	d : 0.04	] : 0.02	f : 0.02	5 : 0.02	: : 0.01	g : 0.01	

#score	2663.0706722019904
#seq	68
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_UTR_m2_run2.txt

#BEAR
oa]eeeeeffffffcccmmmmccc333ffffffffff	chr19:49605895-49606156(+)$1	261	40	77	12.1912
ggg[a[ffffff[bbammmma]bb22ffffff]a]gg	chr14:56094537-56094847(+)$1	310	68	105	10.4961
ggg!!cccccc!!a[ccclllccca]ccc4444ccc2	chr11:65479761-65480007(+)$1	246	25	62	14.0391
""ccc"""dddd!!cccooooooccc4444dddd]cc	chr17:80438857-80439073(+)$1	216	173	210	12.7489
ffffff[a"""ffffffmmmmffffff333a]fffff	chr17:27424071-27424358(-)$1	287	51	88	10.7180
ccc[dddddddd[cccnnnnnccc333dddd]ddddc	chr1:47048798-47049111(-)$1	313	48	85	11.2781
dd[bbcccbb####cccmmmmccc333bb]ccc]bb]	chr14:102550966-102551191(-)$1	225	89	126	14.3865
$dddd####ccc[aooooooaccc333ddddccc]hh	chr19:45422353-45422684(+)$1	331	96	133	12.2179
cc[a!!bb[dddd!!ccclllccc22ddddbb22a]c	chr12:122839559-122839824(-)$1	265	180	217	12.3186
ffffff[a[ccc!!cccmmmmccc22ccc]a22ffff	chr6:52129107-52129315(-)$1	208	21	58	15.2609
dddd[bb[ccc!!bb[ammmma]bb]ccc]bb]dddd	chr20:16360139-16360433(-)$1	294	113	150	11.0835
::iiiiiiiii####ccclllccc333iiiiiiiii:	chr3:9876513-9876793(+)$1	280	161	198	12.5478
======!!dddd[ddddllldddd4444dddd22===	chr10:38411906-38412191(+)$1	285	31	68	11.7643
==========="""cccmmmmccc4444=========	chr12:56563827-56564093(-)$1	266	72	109	16.7449
ddd"""ggggggg[cccmmmmccc]gggggggdddd:	chr18:55282808-55283034(-)$1	226	7	44	12.4738
dddd[a"""dddd!!bbmmmmbb333dddd333a]dd	chr3:27490028-27490372(-)$1	344	209	246	13.1490
eeeccc####gggggggmmmmggggggg333ccc]ee	chr7:26232035-26232254(-)$1	219	40	77	12.5173
iiiiiii[eeeee[cccmmmmccceeeee]iiiiiii	chr8:145692998-145693264(+)$1	266	200	237	13.4400
###bb[bbdddd"""ccclllccc]dddd]bb]bb44	chr22:19484808-19485020(+)$1	212	27	64	11.1912
:==========!!ddddmmmmdddd============	chr15:77759375-77759711(+)$1	336	38	75	13.0747
e[dddd[ffffff[cccmmmmccc22ffffff4444d	chr22:41240742-41240967(-)$1	225	162	199	12.9894
fffff[ccc####ddddmmmmdddd22cccffffff2	chr8:130951755-130952049(-)$1	294	192	229	11.7924
bbbcccccc####cccnnnnnccc4444ccc22ccc]	chr1:1235880-1236159(-)$1	279	58	95	12.3852
dd[ccc!!ffffff[bbmmmmbb]ffffff333cccd	chr15:66645052-66645303(-)$1	251	180	217	11.1528
iii[bb"""ccc[cccooooooccc]cccbbiiiiii	chr17:3728960-3729235(-)$1	275	194	231	12.8876
+++++dddd$$$$$cccmmmmccc333dddd4444cc	chr8:68030383-68030618(+)$1	235	178	215	11.0005
cc[ffffff[bb!!cccmmmmcccbb]ffffff]ccc	chr5:54603768-54604019(+)$1	251	82	119	12.5410
dddd[bb"""cccddddmmmmdddd]ccc333bb]dd	chr2:33820532-33820807(-)$1	275	58	95	12.0591
!ccc[ccc[bb!!cccnnnnnccc22bb22ccc]ccc	chr9:35731978-35732243(-)$1	265	137	174	12.3437
cc!!dddd[ccc[bboooooobbcccdddd]cccfff	chr7:100076317-100076578(-)$1	261	124	161	10.2610
eeeee[eeeee[bb[ccclllccc22bbeeeeeeeee	chr8:145649173-145649407(-)$1	234	145	182	10.5312
cc[ccc"""bb"""cccmmmmccc22bb22ccc22cc	chr17:7142582-7142864(-)$1	282	148	185	14.8832
""ccc!!a[ddddoooooodddd]a]ccc333fffff	chr17:75315759-75316092(+)$1	333	219	256	9.8509
cccbb[==========ammmma]==========bb]c	chr19:17873478-17873745(+)$1	267	160	197	12.9932
e"""gggggggbba[ccclllccc]a]bb]ggggggg	chr17:38320192-38320453(+)$1	261	93	130	12.2978
::ggggggg!!a!!bboooooobb22a22gggggggF	chr6:26158289-26158575(+)$1	286	237	274	10.1085
dd[ccc[eeeee[cccooooooccc]eeeee]cccdd	chr14:53619661-53619985(-)$1	324	236	273	12.0507
feeeee[ccc!!eeeeemmmmeeeee22ccc333eee	chr17:29555942-29556171(+)$1	229	113	150	10.7163
ccc[ffffff[a!!ddddmmmmdddd4444a]fffff	chr11:3038232-3038484(-)$1	252	208	245	11.0566
!!ccc[bb!!ccc!!bbnnnnnbb22ccc]bb]ccc]	chr16:11935451-11935667(-)$1	216	154	191	11.0561
:ggggggg[ccc[ddddoooooodddd]ccc]ggggg	chr1:161176127-161176383(+)$1	256	180	217	10.5479
:ggggggg!!ccc[cccmmmmcccccc4444gggggg	chr12:53836392-53836617(+)$1	225	95	132	13.7391
iiiiii[ccc####cccrrrrrrrrrccc333ccc]i	chr3:156867523-156867810(-)$1	287	176	213	11.5771
bbccc!!ccc[bb[cccmmmmcccbb]ccc22ccc::	chr1:153733948-153734164(+)$1	216	144	181	11.2845
fffff!!eeeee!!ddddlllddddeeeee333ffff	chr16:28884817-28885175(+)$1	358	228	265	11.0136
cc[bb!!==========mmmm==========22bb]c	chr2:187373295-187373541(+)$1	246	88	125	13.3270
d::bbcccbb####cccmmmmccc333bb]ccc]bb:	chr14:102551063-102551301(-)$1	238	199	236	11.6277
:::gggggggccc[ccclllccc333ccc]ggggggg	chr16:3713328-3713625(-)$1	297	218	255	11.4094
!!ccc####dddd[cccmmmmccc]dddd333cccdd	chr2:27592179-27592479(-)$1	300	191	228	14.6733
dddd[bb!!eeeeecccmmmmccc]eeeee22bb]dd	chr17:40724843-40725137(-)$1	294	147	184	11.8204
!dddd####eeeeecccmmmmccc]eeeee4444ddd	chr3:186502252-186502463(+)$1	211	150	187	13.1244
eeeee!!dddd"""cccmmmmccc22dddd]eeeee3	chr17:73663325-73663663(+)$1	338	175	212	13.9582
cc"""ccc[bb"""cccmmmmccc333bb]ccc333c	chr3:50107805-50108082(+)$1	277	158	195	15.8929
ee"""ggggggg[ddddmmmmdddd]ggggggg]eee	chr15:74912247-74912519(+)$1	272	208	245	12.0990
cceeeee!!ccc[ddddllldddd22ccc22eeeeeE	chr6:135513412-135513688(+)$1	276	182	219	10.5272
[bb[ffffff[bb[cccmmmmcccbb]ffffff]bb]	chr19:59069563-59069836(-)$1	273	23	60	11.0569
[dddd!!eeeee!!cccmmmmccc22eeeeedddd]f	chr22:45736205-45736458(+)$1	253	34	71	13.5054
=[eeeee!!bb"""cccooooooccc333bb22eeee	chr4:83277882-83278147(-)$1	265	61	98	12.0311

#otherMatches

#Seq PSSM
UGUCCAGCAGCUCUCCAGAGGUGGUCAGGAGCUCCCU	chr19:49605895-49606156(+)$1	261	40	77	12.1912
UCUGCAUUGCUUUCUCAAUUGCAGUCAAGUAAGGGAG	chr14:56094537-56094847(+)$1	310	68	105	10.4961
GGGGAGGUGGGUAGAGCCCGAGGCCCCCCAGUAGCCG	chr11:65479761-65480007(+)$1	246	25	62	14.0391
AAAGCCUUCCCCCUGCUUUGCAUGGCUCCCGGGGCGC	chr17:80438857-80439073(+)$1	216	173	210	12.7489
GCUCCAGCAGGAGUUUGAGGACAAGCUGGAGGUGGAG	chr17:27424071-27424358(-)$1	287	51	88	10.7180
GGGUAAAUUUACAGCUUGAUCAGUACAGUGAUGUUUC	chr1:47048798-47049111(-)$1	313	48	85	11.2781
AAAUCCCGACGAUAUUACUAAUGAGGAGUACGGAGAA	chr14:102550966-102551191(-)$1	225	89	126	14.3865
UUCAGAAAGUGAAGGAGAAACUCAAGAUUGACUCAUG	chr19:45422353-45422684(+)$1	331	96	133	12.2179
UUGCGGAGAUGGUGAUGGUUUCUAAAGCCACUGAGGA	chr12:122839559-122839824(-)$1	265	180	217	12.3186
UUAACAGUGUUGAAUUCAACUGAAGGCGAGGAAUGUU	chr6:52129107-52129315(-)$1	208	21	58	15.2609
UCCAGCUCCUGCGGCGUGGGGAGGUACAGUGGGUGGA	chr20:16360139-16360433(-)$1	294	113	150	11.0835
CCAGGCUGGCUGGCACCCCAAGGGAAGAGCUGGUCUC	chr3:9876513-9876793(+)$1	280	161	198	12.5478
aggcuguacaggaagcauggugcuaacaucugaucag	chr10:38411906-38412191(+)$1	285	31	68	11.7643
CUGUUUUCUUUCUUUUCUCAUGGGCCCAGAGGAGAGC	chr12:56563827-56564093(-)$1	266	72	109	16.7449
GUGAACGUUGUUAAAGUUAGAACUCUGGCAACCAUGU	chr18:55282808-55283034(-)$1	226	7	44	12.4738
GGACGGGAAUCUCCUUCUUAUGGUAAGAGAAAACAGU	chr3:27490028-27490372(-)$1	344	209	246	13.1490
UGUUCCAACAAUUAUAGGAAACUAUGGUCCAGGAGGC	chr7:26232035-26232254(-)$1	219	40	77	12.5173
GAGGGGGUGCUUCAGGUGAGUGCCGAGGUUUCCUCUC	chr8:145692998-145693264(+)$1	266	200	237	13.4400
CCAGUCUGGCUGCAUGGCCCAGCCCCAGCACAUGCCC	chr22:19484808-19485020(+)$1	212	27	64	11.1912
uuuuauuuuguuuuguuuuguAGCAACGAAGUAAACG	chr15:77759375-77759711(+)$1	336	38	75	13.0747
AAUGUGAAAGGUCCUGCUGUUGCAAUGAUUUUAUGAC	chr22:41240742-41240967(-)$1	225	162	199	12.9894
GAGGGUGAGUGAUUGGUUUUUGCCAUUUUCCCCUCUU	chr8:130951755-130952049(-)$1	294	192	229	11.7924
UCUCACCCCACCUGGCACUUGGCCUCCAGGGAUGUGC	chr1:1235880-1236159(-)$1	279	58	95	12.3852
UGUGAggccaggcacgguggcucaugccuguaauucc	chr15:66645052-66645303(-)$1	251	180	217	11.1528
UAGAUGUAAAGUUAUUGUAAAAAAUUGCUCACUGUCU	chr17:3728960-3729235(-)$1	275	194	231	12.8876
UUUUAUGGGUCCAGGAAUACUUUCGAUCCCAGUCUUG	chr8:68030383-68030618(+)$1	235	178	215	11.0005
GCAUUCGGAGAUGAGCUGUUCAGCGUGUUCGAGGGCG	chr5:54603768-54604019(+)$1	251	82	119	12.5410
GGUAUGAUUGUAUUUUCUUCUGAAAUGUAAUUUCUUG	chr2:33820532-33820807(-)$1	275	58	95	12.0591
ggccggcgggcggggcgcagagccaggcagcgcaggu	chr9:35731978-35732243(-)$1	265	137	174	12.3437
GGACCCUCAGGCUCAGAUCAGUGGCCGAGGCCCCAGA	chr7:100076317-100076578(-)$1	261	124	161	10.2610
GACUCACAGGUGCGUCAGAUGCUGUUCGACCUGGAGU	chr8:145649173-145649407(-)$1	234	145	182	10.5312
CGGGCUGAGGCGGACACUUCUGUGGAGCGAAGCAGUG	chr17:7142582-7142864(-)$1	282	148	185	14.8832
GAGAGAGGAGGCUGCCGGAAGCCGCACUCGGGACCUC	chr17:75315759-75316092(+)$1	333	219	256	9.8509
GCUGGCGGACUUCAUCCGGGAGAGGUGAGGUCCCCAA	chr19:17873478-17873745(+)$1	267	160	197	12.9932
UAAGACUGGGACCUGGGAAGCUCCGGUGGAUUCUAGU	chr17:38320192-38320453(+)$1	261	93	130	12.2978
AAGGUGCUGAAGCAGGUCCAUCCCGACACCGGCAUCU	chr6:26158289-26158575(+)$1	286	237	274	10.1085
CCUGGGAGCUGGGCUCAGACGCGAGGCCAGCGUUCGG	chr14:53619661-53619985(-)$1	324	236	273	12.0507
UUCACAAGACCAUUGUUAAGAGGCGAAUGUCCCAUGU	chr17:29555942-29556171(+)$1	229	113	150	10.7163
CAGGACUGGGAGAACAGAGGCCUCUGGUGCCCCCCAG	chr11:3038232-3038484(-)$1	252	208	245	11.0566
AGGGUGUAAAUUCAGUCACUAGGAGAGAAGUAGACCA	chr16:11935451-11935667(-)$1	216	154	191	11.0561
UGGUGCGGAAGUGUGAUCCUCACAUCGGGCUCCUGCA	chr1:161176127-161176383(+)$1	256	180	217	10.5479
CACACCUAAACAUGUGGAAUCCCAAUGCCGGUAGGUG	chr12:53836392-53836617(+)$1	225	95	132	13.7391
UCCAAGCCAUGUAAGAUGUAUUUAGAAUUAAAAUGAC	chr3:156867523-156867810(-)$1	287	176	213	11.5771
GGGCAAUGCUGAGAGAGAAGUUUCCUGAGUUCUGCAG	chr1:153733948-153734164(+)$1	216	144	181	11.2845
CCCCCAAUGGUGCAGCUGCAGCAGUCACCACUAGGGG	chr16:28884817-28885175(+)$1	358	228	265	11.0136
UUGAUGAAAAUCUUUUCACUGGAGAGGAUUUGGAUGA	chr2:187373295-187373541(+)$1	246	88	125	13.3270
AAAUCCCGACGAUAUUACUAAUGAGGAGUACGGAGAA	chr14:102551063-102551301(-)$1	238	199	236	11.6277
UCUAGGCGUGGGGCUGGUUUCCACUCCCCGCACGCCU	chr16:3713328-3713625(-)$1	297	218	255	11.4094
AUGUCAAGGUGAGUGAGGGGUCUCUUUUAAAGGGCUG	chr2:27592179-27592479(-)$1	300	191	228	14.6733
CCUGAGGGGCCCACGGUCAGGACUGGUGGGGACUGCA	chr17:40724843-40725137(-)$1	294	147	184	11.8204
GUCUCUCCUUCGUGGCAUCUAUGCUUACGGUUUUGAG	chr3:186502252-186502463(+)$1	211	150	187	13.1244
GAUUCAGAGCCCGAGUCUGAUGGCGAGGCUGGAAUCG	chr17:73663325-73663663(+)$1	338	175	212	13.9582
AGUACUCCAGGGAAACUGACAGGUAAGCCAGGAACUC	chr3:50107805-50108082(+)$1	277	158	195	15.8929
UCACGUUCUCGUCAUCGUCGGCGAUCGCGGGAGAGGG	chr15:74912247-74912519(+)$1	272	208	245	12.0990
AUGGGUUUUGCUCAGGCUCCGCCUACAGCUCAACUCC	chr6:135513412-135513688(+)$1	276	182	219	10.5272
gcgggggGCCGGGUGGCCGGGGUCCCGGGCCCCgcgg	chr19:59069563-59069836(-)$1	273	23	60	11.0569
GGGCAUUUCAUUCUUUUAUUUAAACAGAUGAUGCUGG	chr22:45736205-45736458(+)$1	253	34	71	13.5054
UCUUGAGUCAGUUUAAUAAUGUAAUUUUUCUCUUUUA	chr4:83277882-83278147(-)$1	265	61	98	12.0311

#DB
.).)))))(((((((((....)))...))))))((((	chr19:49605895-49606156(+)$1	1	40	77	12.1912
(((.(.((((((.(((....).))..)))))).).))	chr14:56094537-56094847(+)$1	1	68	105	10.4961
(((..((((((..(.(((...)))).)))....))).	chr11:65479761-65480007(+)$1	1	25	62	14.0391
..(((...((((..(((......)))....)))).))	chr17:80438857-80439073(+)$1	1	173	210	12.7489
((((((.(...((((((....))))))...).)))))	chr17:27424071-27424358(-)$1	1	51	88	10.7180
(((.((((((((.(((.....)))...)))).)))))	chr1:47048798-47049111(-)$1	1	48	85	11.2781
((.(((((((....(((....)))...)).))).)).	chr14:102550966-102551191(-)$1	1	89	126	14.3865
.((((....(((.(......))))...))))))).))	chr19:45422353-45422684(+)$1	1	96	133	12.2179
((.(..((.((((..(((...)))..))))))..).)	chr12:122839559-122839824(-)$1	1	180	217	12.3186
((((((.(.(((..(((....)))..))).)..))))	chr6:52129107-52129315(-)$1	1	21	58	15.2609
((((.((.(((..((.(....).)).))).)).))))	chr20:16360139-16360433(-)$1	1	113	150	11.0835
..(((((((((....(((...)))...))))))))).	chr3:9876513-9876793(+)$1	1	161	198	12.5478
((((((..((((.((((...))))....))))..)))	chr10:38411906-38412191(+)$1	1	31	68	11.7643
(((((((((((...(((....)))....)))))))))	chr12:56563827-56564093(-)$1	1	72	109	16.7449
(((...(((((((.(((....))).))))))))))).	chr18:55282808-55283034(-)$1	1	7	44	12.4738
((((.(...((((..((....))...))))...).))	chr3:27490028-27490372(-)$1	1	209	246	13.1490
((((((....(((((((....)))))))...))).))	chr7:26232035-26232254(-)$1	1	40	77	12.5173
(((((((.(((((.(((....)))))))).)))))))	chr8:145692998-145693264(+)$1	1	200	237	13.4400
...((.((((((...(((...))).)))).)).))..	chr22:19484808-19485020(+)$1	1	27	64	11.1912
.((((((((((..((((....))))))))))))))((	chr15:77759375-77759711(+)$1	1	38	75	13.0747
(.((((.((((((.(((....)))..))))))....)	chr22:41240742-41240967(-)$1	1	162	199	12.9894
(((((.(((....((((....))))..))))))))).	chr8:130951755-130952049(-)$1	1	192	229	11.7924
(((((((((....(((.....)))....)))..))).	chr1:1235880-1236159(-)$1	1	58	95	12.3852
((.(((..((((((.((....)).))))))...))))	chr15:66645052-66645303(-)$1	1	180	217	11.1528
(((.((...(((.(((......))).)))))))))))	chr17:3728960-3729235(-)$1	1	194	231	12.8876
.....((((.....(((....)))...))))....))	chr8:68030383-68030618(+)$1	1	178	215	11.0005
((.((((((.((..(((....))))).)))))).)))	chr5:54603768-54604019(+)$1	1	82	119	12.5410
((((.((...(((((((....)))).)))...)).))	chr2:33820532-33820807(-)$1	1	58	95	12.0591
.(((.(((.((..(((.....)))..))..))).)))	chr9:35731978-35732243(-)$1	1	137	174	12.3437
((..((((.(((.((......))))))))).))))))	chr7:100076317-100076578(-)$1	1	124	161	10.2610
(((((.(((((.((.(((...)))..)))))))))))	chr8:145649173-145649407(-)$1	1	145	182	10.5312
((.(((...((...(((....)))..))..)))..))	chr17:7142582-7142864(-)$1	1	148	185	14.8832
..(((..(.((((......)))).).)))...)))))	chr17:75315759-75316092(+)$1	1	219	256	9.8509
(((((.(((((((((((....).)))))))))))).)	chr19:17873478-17873745(+)$1	1	160	197	12.9932
(...((((((((((.(((...))).).)).)))))))	chr17:38320192-38320453(+)$1	1	93	130	12.2978
..(((((((..(..((......))..)..))))))))	chr6:26158289-26158575(+)$1	1	237	274	10.1085
((.(((.(((((.(((......))).))))).)))))	chr14:53619661-53619985(-)$1	1	236	273	12.0507
)(((((.(((..(((((....)))))..)))...)))	chr17:29555942-29556171(+)$1	1	113	150	10.7163
(((.((((((.(..((((....))))....).)))))	chr11:3038232-3038484(-)$1	1	208	245	11.0566
..(((.((..(((..((.....))..))).)).))).	chr16:11935451-11935667(-)$1	1	154	191	11.0561
.(((((((.(((.((((......)))).))).)))))	chr1:161176127-161176383(+)$1	1	180	217	10.5479
.(((((((..(((.(((....))))))....))))))	chr12:53836392-53836617(+)$1	1	95	132	13.7391
((((((.(((....(((.........)))...))).)	chr3:156867523-156867810(-)$1	1	176	213	11.5771
))(((..(((.((.(((....))))).)))..)))..	chr1:153733948-153734164(+)$1	1	144	181	11.2845
(((((..(((((..((((...)))))))))...))))	chr16:28884817-28885175(+)$1	1	228	265	11.0136
((.((..((((((((((....))))))))))..)).)	chr2:187373295-187373541(+)$1	1	88	125	13.3270
)..(((((((....(((....)))...)).))).)).	chr14:102551063-102551301(-)$1	1	199	236	11.6277
...((((((((((.(((...)))...))).)))))))	chr16:3713328-3713625(-)$1	1	218	255	11.4094
..(((....((((.(((....))).))))...)))))	chr2:27592179-27592479(-)$1	1	191	228	14.6733
((((.((..((((((((....))).)))))..)).))	chr17:40724843-40725137(-)$1	1	147	184	11.8204
.((((....((((((((....))).)))))....)))	chr3:186502252-186502463(+)$1	1	150	187	13.1244
(((((..((((...(((....)))..)))).))))).	chr17:73663325-73663663(+)$1	1	175	212	13.9582
((...(((.((...(((....)))...)).)))...)	chr3:50107805-50108082(+)$1	1	158	195	15.8929
((...(((((((.((((....)))).))))))).)))	chr15:74912247-74912519(+)$1	1	208	245	12.0990
))(((((..(((.((((...))))..)))..))))))	chr6:135513412-135513688(+)$1	1	182	219	10.5272
.((.((((((.((.(((....))))).)))))).)).	chr19:59069563-59069836(-)$1	1	23	60	11.0569
.((((..(((((..(((....)))..))))))))).)	chr22:45736205-45736458(+)$1	1	34	71	13.5054
(.(((((..((...(((......)))...))..))))	chr4:83277882-83278147(-)$1	1	61	98	12.0311

#PSSM
c : 0.17	d : 0.15	: : 0.10	e : 0.10	f : 0.08	! : 0.06	= : 0.05	i : 0.05	g : 0.03	" : 0.03	b : 0.03	[ : 0.03	o : 0.01	$ : 0.01	# : 0.01	+ : 0.01	
c : 0.18	d : 0.18	e : 0.08	g : 0.06	f : 0.06	: : 0.06	" : 0.05	= : 0.05	i : 0.05	b : 0.05	[ : 0.03	! : 0.03	a : 0.01	# : 0.01	+ : 0.01	
c : 0.15	d : 0.15	[ : 0.12	e : 0.10	g : 0.08	f : 0.06	i : 0.06	= : 0.05	" : 0.05	b : 0.03	: : 0.03	] : 0.01	# : 0.01	+ : 0.01	! : 0.01	
c : 0.18	d : 0.13	e : 0.10	[ : 0.08	f : 0.08	b : 0.08	" : 0.06	g : 0.06	i : 0.05	= : 0.05	! : 0.03	a : 0.01	+ : 0.01	
c : 0.17	f : 0.12	e : 0.10	d : 0.10	b : 0.10	[ : 0.08	g : 0.08	i : 0.05	= : 0.05	" : 0.05	! : 0.03	a : 0.01	+ : 0.01	
c : 0.17	! : 0.12	[ : 0.10	g : 0.10	f : 0.08	e : 0.06	d : 0.06	b : 0.06	# : 0.05	i : 0.05	= : 0.05	" : 0.03	a : 0.01	
! : 0.13	c : 0.12	g : 0.12	[ : 0.10	b : 0.10	e : 0.06	f : 0.06	" : 0.06	# : 0.06	d : 0.05	= : 0.05	i : 0.03	
c : 0.17	g : 0.12	e : 0.08	f : 0.08	" : 0.08	! : 0.08	d : 0.06	# : 0.06	= : 0.06	a : 0.05	b : 0.05	[ : 0.03	i : 0.01	
f : 0.12	c : 0.12	[ : 0.12	d : 0.10	" : 0.08	g : 0.08	e : 0.08	! : 0.08	# : 0.06	= : 0.06	b : 0.03	i : 0.01	
c : 0.18	d : 0.15	e : 0.12	f : 0.10	b : 0.10	= : 0.06	g : 0.06	# : 0.05	! : 0.05	" : 0.03	i : 0.01	$ : 0.01	[ : 0.01	
c : 0.20	d : 0.15	e : 0.12	# : 0.08	b : 0.08	f : 0.06	= : 0.06	g : 0.06	[ : 0.05	! : 0.03	" : 0.01	i : 0.01	$ : 0.01	
c : 0.17	d : 0.13	# : 0.10	e : 0.10	f : 0.08	! : 0.08	" : 0.08	b : 0.06	g : 0.05	= : 0.03	a : 0.03	$ : 0.01	[ : 0.01	
! : 0.18	[ : 0.17	# : 0.10	" : 0.10	f : 0.06	d : 0.06	e : 0.06	c : 0.06	b : 0.06	g : 0.03	= : 0.03	$ : 0.01	
! : 0.17	[ : 0.13	d : 0.12	" : 0.10	c : 0.08	b : 0.06	# : 0.06	f : 0.05	a : 0.05	e : 0.05	= : 0.03	g : 0.01	$ : 0.01	o : 0.01	
c : 0.49	d : 0.15	b : 0.06	[ : 0.06	! : 0.05	o : 0.03	= : 0.03	f : 0.01	# : 0.01	g : 0.01	" : 0.01	e : 0.01	
c : 0.60	d : 0.15	b : 0.06	o : 0.05	= : 0.03	a : 0.01	f : 0.01	[ : 0.01	g : 0.01	e : 0.01	
c : 0.51	d : 0.15	o : 0.10	n : 0.05	b : 0.05	a : 0.03	m : 0.01	f : 0.01	g : 0.01	e : 0.01	= : 0.01	
m : 0.56	o : 0.15	c : 0.10	n : 0.06	l : 0.05	d : 0.03	r : 0.01	
m : 0.58	l : 0.17	o : 0.15	n : 0.06	r : 0.01	
m : 0.58	l : 0.17	o : 0.13	n : 0.06	d : 0.01	r : 0.01	
m : 0.56	l : 0.12	o : 0.12	n : 0.06	d : 0.05	a : 0.03	r : 0.01	c : 0.01	
c : 0.53	d : 0.13	o : 0.10	b : 0.05	a : 0.03	] : 0.01	f : 0.01	g : 0.01	e : 0.01	m : 0.01	n : 0.01	r : 0.01	= : 0.01	
c : 0.56	d : 0.15	b : 0.10	o : 0.05	] : 0.03	f : 0.01	g : 0.01	e : 0.01	r : 0.01	= : 0.01	
c : 0.60	d : 0.15	b : 0.06	3 : 0.03	] : 0.03	= : 0.03	f : 0.01	g : 0.01	e : 0.01	r : 0.01	
2 : 0.20	3 : 0.17	d : 0.12	c : 0.10	] : 0.10	b : 0.06	4 : 0.05	a : 0.03	f : 0.03	e : 0.03	= : 0.03	g : 0.01	r : 0.01	
2 : 0.22	3 : 0.17	] : 0.12	e : 0.08	c : 0.06	d : 0.06	4 : 0.05	= : 0.05	b : 0.05	f : 0.03	g : 0.03	a : 0.01	r : 0.01	
c : 0.18	3 : 0.15	d : 0.12	e : 0.10	4 : 0.08	f : 0.06	] : 0.06	g : 0.05	= : 0.05	b : 0.05	2 : 0.03	a : 0.01	
c : 0.20	d : 0.15	b : 0.12	f : 0.10	4 : 0.10	e : 0.10	g : 0.05	= : 0.05	3 : 0.03	2 : 0.03	i : 0.01	] : 0.01	
c : 0.25	d : 0.17	e : 0.12	f : 0.10	b : 0.06	= : 0.06	4 : 0.05	3 : 0.05	2 : 0.05	g : 0.03	i : 0.01	
] : 0.17	d : 0.13	f : 0.10	3 : 0.10	e : 0.10	c : 0.08	4 : 0.06	= : 0.06	g : 0.05	2 : 0.05	b : 0.03	i : 0.01	
c : 0.13	3 : 0.13	f : 0.10	b : 0.10	d : 0.08	g : 0.08	= : 0.06	4 : 0.05	a : 0.05	e : 0.05	2 : 0.05	i : 0.03	] : 0.03	
c : 0.13	3 : 0.13	f : 0.10	2 : 0.10	g : 0.10	] : 0.08	b : 0.06	4 : 0.05	d : 0.05	i : 0.05	= : 0.05	e : 0.05	
c : 0.20	f : 0.12	2 : 0.10	g : 0.10	] : 0.06	4 : 0.06	d : 0.06	3 : 0.06	i : 0.05	= : 0.05	e : 0.05	b : 0.03	
c : 0.18	f : 0.12	] : 0.10	d : 0.08	b : 0.08	g : 0.08	e : 0.06	2 : 0.05	i : 0.05	4 : 0.05	a : 0.03	= : 0.03	3 : 0.03	
c : 0.17	f : 0.13	] : 0.12	b : 0.10	e : 0.10	d : 0.08	g : 0.08	i : 0.05	= : 0.05	4 : 0.03	a : 0.01	2 : 0.01	3 : 0.01	
c : 0.15	d : 0.15	f : 0.13	e : 0.12	g : 0.10	] : 0.08	b : 0.05	i : 0.05	= : 0.05	4 : 0.03	h : 0.01	: : 0.01	3 : 0.01	
c : 0.17	d : 0.15	f : 0.13	g : 0.08	e : 0.08	] : 0.06	: : 0.06	= : 0.05	i : 0.05	2 : 0.03	h : 0.01	4 : 0.01	F : 0.01	3 : 0.01	E : 0.01	

#score	711.8168543398792
#seq	58
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_transcript_m3_run2.txt

#BEAR
ee[eeeeepppppppeeeee22ee	chr16:75273910-75274201(-)$1	291	57	81	15.3683
c[ffffffpppppppffffff]cc	chr17:80187298-80187548(+)$1	250	10	34	14.6249
!ccc!!bbpppppppbb]ccceee	chr8:145684570-145684808(-)$1	238	7	31	14.3547
c!!eeeeepppppppeeeee22cc	chr22:50872358-50872612(+)$1	254	87	111	15.8765
fffff[bbpppppppbb]ffffff	chr7:5436978-5437230(-)$1	252	68	92	13.9650
========ppppppp=========	chr19:4062844-4063097(-)$1	253	172	196	16.2614
"a[eeeeepppppppeeeeea333	chr20:62688996-62689248(+)$1	252	75	99	16.1095
fffff[bbpppppppbb]ffffff	chr1:2232016-2232266(+)$1	250	16	40	13.9650
hhhhhh[apppppppa]hhhhhhh	chr2:241563326-241563576(+)$1	250	39	63	13.5174
eeee[cccpppppppccceeeeeb	chr8:144674479-144674746(-)$1	267	153	177	14.7563
fff!!cccpppppppccc22ffff	chr16:88729240-88729494(-)$1	254	62	86	14.5516
ggggg[bbpppppppbb]gggggg	chr4:1371133-1371391(+)$1	258	9	33	15.2848
[gggggggpppppppggggggg]a	chr2:242641975-242642257(+)$1	282	135	159	15.7331
cc[eeeeepppppppeeeeeccc:	chr9:97847762-97848071(+)$1	309	41	65	14.9570
!!ffffffrrrrrrrrrffffff]	chr20:62583818-62584061(-)$1	243	120	144	11.3035
fffeeeeerrrrrrrrreeeee]f	chr14:105854023-105854277(+)$1	254	187	211	11.8983
eee[ddddpppppppddddeeeee	chr20:61284786-61285050(+)$1	264	39	63	14.2488
:gggggggpppppppggggggg::	chr20:61592856-61593115(+)$1	259	113	137	12.7702
cc"""cccpppppppccc333ccc	chr22:51166632-51166893(+)$1	261	36	60	15.3851
dd!!ddddpppppppdddd]dddd	chr11:843229-843445(+)$1	216	141	165	13.9708
bb[eeeeerrrrrrrrreeeeebb	chr2:264202-264498(-)$1	296	73	97	11.5366
cc[cccrrrrrrrrrccc22ccc2	chr16:1215026-1215331(+)$1	305	44	68	11.2425
ddd[ddddpppppppdddd22ddd	chr16:588256-588488(+)$1	232	164	188	13.4181
f!!eeeeerrrrrrrrreeeee22	chr17:79859880-79860152(-)$1	272	54	78	12.2506
f!!eeeeepppppppeeeeeffff	chr17:80190134-80190409(+)$1	275	94	118	15.7302
cc[eeeeepppppppeeeee333c	chr6:36646617-36646865(+)$1	248	57	81	16.2399
gg"""cccpppppppccc4444gg	chr16:89359137-89359427(-)$1	290	73	97	15.2157
b[bb[cccpppppppccc22bb]b	chr22:39916980-39917260(+)$1	280	97	121	13.5445
ff[cccrrrrrrrrrcccffffff	chr5:34192389-34192639(-)$1	250	58	82	11.2031
"""eeeeepppppppeeeee22ee	chr7:2673022-2673264(+)$1	242	146	170	15.5154
b!!eeeeerrrrrrrrreeeee22	chr1:8086044-8086308(-)$1	264	238	262	12.1628
c!!eeeeepppppppeeeee22cc	chr22:50873128-50873421(+)$1	293	48	72	15.8765
##ffffffpppppppffffff333	chr17:79966084-79966334(+)$1	250	112	136	14.6881
========ppppppp=========	chr17:79066118-79066369(+)$1	251	150	174	16.2614
hhhhhh[apppppppa]hhhhhhh	chr17:79674334-79674589(+)$1	255	160	184	13.5174
e!!eeeeepppppppeeeee]eee	chr17:18965299-18965552(+)$1	253	172	196	15.8381
iiiiiiiirrrrrrrrriiiiiii	chr17:75452176-75452432(+)$1	256	199	223	12.5560
ggggddddpppppppdddd333gg	chr7:5462133-5462397(-)$1	264	3	27	15.2883
gggggg[apppppppa]ggggggg	chr16:75283974-75284203(-)$1	229	19	43	15.8106
b[ccc[bbpppppppbb]ccc]bb	chr20:32255459-32255706(-)$1	247	219	243	14.0218
bb[eeeeepppppppeeeee]bb:	chr7:23508263-23508523(-)$1	260	53	77	14.0931
iiiii[bbpppppppbb]iiiiii	chr14:105912549-105912810(+)$1	261	29	53	15.3710
iiii[cccpppppppccc]iiiii	chr16:89788070-89788313(+)$1	243	194	218	15.9151
c!!eeeeepppppppeeeee]ccc	chr9:136920473-136920743(-)$1	270	186	210	16.1333
hhh[ddddpppppppddddhhhhh	chr13:113747322-113747574(+)$1	252	188	212	13.7566
ffffddddpppppppdddd]ffff	chr16:87896527-87896769(-)$1	242	91	115	14.2195
dccc!!bbpppppppbb22ccc44	chr19:1409314-1409573(+)$1	259	118	142	13.7727
!gggggggpppppppggggggg22	chr17:80188528-80188796(+)$1	268	173	197	15.4345
iiiiii[apppppppa]iiiiiii	chr1:1279004-1279257(-)$1	253	215	239	15.9064
========ppppppp=========	chr19:13261906-13262150(+)$1	244	200	224	16.2614
[a[a[cccpppppppccc]a]a]c	chr14:105261511-105261787(-)$1	276	240	264	15.6202
ee!!ddddpppppppdddd]eeee	chr20:31048887-31049154(-)$1	267	4	28	14.6136
:gggggggpppppppggggggg::	chr7:2681190-2681440(+)$1	250	76	100	12.7702
ggffffffpppppppffffff]gg	chr1:1154912-1155177(-)$1	265	201	225	14.6482
eee[ddddpppppppddddeeeee	chr7:158361977-158362236(-)$1	259	200	224	14.2488
gg[eeeeepppppppeeeeegggg	chr3:98451767-98452020(+)$1	253	67	91	16.2275
!dddd[bbpppppppbb]dddd33	chr20:60639226-60639505(-)$1	279	46	70	13.7083
:gggggggrrrrrrrrrggggggg	chr20:61287185-61287428(+)$1	243	38	62	11.4563
iiiiiiiipppppppiiiiiiiii	chr19:660452-660704(-)$1	252	185	209	15.8949
###ccc[arrrrrrrrra]cccff	chr2:129067719-129067970(-)$1	251	111	135	11.5567

#otherMatches

#Seq PSSM
GCUGGGCUGAGAAGGAGCCCUUGC	chr16:75273910-75274201(-)$1	291	57	81	15.3683
GUCCGGGUAUAAAUAGCUCGGUCC	chr17:80187298-80187548(+)$1	250	10	34	14.6249
AAGACUCAGCUUUUAUGUUCUCUG	chr8:145684570-145684808(-)$1	238	7	31	14.3547
GAACCUGGAGGAGGGCCGGGGGCG	chr22:50872358-50872612(+)$1	254	87	111	15.8765
aggcacugagaACGGCACUGCCUU	chr7:5436978-5437230(-)$1	252	68	92	13.9650
cuucccauccagacaguggggaga	chr19:4062844-4063097(-)$1	253	172	196	16.2614
AGCUCCUGAGGGACCCGGGACCAG	chr20:62688996-62689248(+)$1	252	75	99	16.1095
UGACAGUCCCUCUGAGAGUGUCAC	chr1:2232016-2232266(+)$1	250	16	40	13.9650
GCUGGGGAGGAGUGAUGCCCAGCA	chr2:241563326-241563576(+)$1	250	39	63	13.5174
GGUCAGCAGCUGACAUGCGGCUCC	chr8:144674479-144674746(-)$1	267	153	177	14.7563
GGUCAUCAAGUACUGUGAGUGCCG	chr16:88729240-88729494(-)$1	254	62	86	14.5516
UCUCACUCACAGCAGGACUGAGAU	chr4:1371133-1371391(+)$1	258	9	33	15.2848
GUGCUGUUUCCAGGUGGCAGCAGG	chr2:242641975-242642257(+)$1	282	135	159	15.7331
CUGCACCUGAAGAGAAGGUGAGAU	chr9:97847762-97848071(+)$1	309	41	65	14.9570
AGCUCAGGAAGUUAGAACCUGGGA	chr20:62583818-62584061(-)$1	243	120	144	11.3035
GUGCCUUCGCGUGCCUGGGAGGAC	chr14:105854023-105854277(+)$1	254	187	211	11.8983
GCAAUUUGUCAUCCCCAAAUGCUG	chr20:61284786-61285050(+)$1	264	39	63	14.2488
GCGGCCCCUGUAGGUGGGGCCGGG	chr20:61592856-61593115(+)$1	259	113	137	12.7702
GCCUCCUGACAUCUCCAGCAUGCU	chr22:51166632-51166893(+)$1	261	36	60	15.3851
UCCCGAGCUCCCGACGCUCAGACG	chr11:843229-843445(+)$1	216	141	165	13.9708
GUUGGGGCACAGCGCGAGUCUCGC	chr2:264202-264498(-)$1	296	73	97	11.5366
CGGGGCAAGGAGGGGGCUGAUGGG	chr16:1215026-1215331(+)$1	305	44	68	11.2425
UUCUGCCUACGGGGCAGGCCUGAG	chr16:588256-588488(+)$1	232	164	188	13.4181
UGGGCCGCCUUAUAUCUGCGGCGA	chr17:79859880-79860152(-)$1	272	54	78	12.2506
UAGGCGGGUGAGGGGUCUGCAGGU	chr17:80190134-80190409(+)$1	275	94	118	15.7302
GUUCGCGGGUGUGUGCUGCGUUCA	chr6:36646617-36646865(+)$1	248	57	81	16.2399
CUGUUGUUUAGAGGUGGCUAUGAG	chr16:89359137-89359427(-)$1	290	73	97	15.2157
CGUGAGUCAAgggcgggcgguggg	chr22:39916980-39917260(+)$1	280	97	121	13.5445
GGAGGCCCACCCGAAGCCCCUGUU	chr5:34192389-34192639(-)$1	250	58	82	11.2031
GAAGGAUUGGUAUAAAAUCUCACG	chr7:2673022-2673264(+)$1	242	146	170	15.5154
GAGUCUCUGGGAUGGAGGGAGAGG	chr1:8086044-8086308(-)$1	264	238	262	12.1628
GAACCUGGAGGAGGGCCGGGGGCA	chr22:50873128-50873421(+)$1	293	48	72	15.8765
UGGGAGCCCAGAGCCGGCUCCAGG	chr17:79966084-79966334(+)$1	250	112	136	14.6881
AGGCAGAGUGGAUUUCUCUGUCUG	chr17:79066118-79066369(+)$1	251	150	174	16.2614
CACCGGUGAAUGUGCCUCUGGUGG	chr17:79674334-79674589(+)$1	255	160	184	13.5174
CUAGCUCGUAAACUCCGGGCCGUU	chr17:18965299-18965552(+)$1	253	172	196	15.8381
CGCCACACGAGGAGCAGGUGUGGU	chr17:75452176-75452432(+)$1	256	199	223	12.5560
UUGUAACCAAAACCGGGUUAAAAU	chr7:5462133-5462397(-)$1	264	3	27	15.2883
GGGGCUGUGGGGAAAAGAGCUUUG	chr16:75283974-75284203(-)$1	229	19	43	15.8106
CCACCAGCAGAUCCCGCAGGUAGC	chr20:32255459-32255706(-)$1	247	219	243	14.0218
GGGCCGCGUCCCUCUUGCGGGCCU	chr7:23508263-23508523(-)$1	260	53	77	14.0931
ACUGAGGCCCUUCAUGUGUCGGUG	chr14:105912549-105912810(+)$1	261	29	53	15.3710
gcccgggcguggcggguugggguc	chr16:89788070-89788313(+)$1	243	194	218	15.9151
AAGGGCAGGAGCCUGCUGCUGUCC	chr9:136920473-136920743(-)$1	270	186	210	16.1333
CUCUCAGCCUCCCUUGCUGGGGGC	chr13:113747322-113747574(+)$1	252	188	212	13.7566
UUUCCCUGUCCCAGUUGGGUGAAG	chr16:87896527-87896769(-)$1	242	91	115	14.2195
UCCCAGCCUGGGUCUGGAGGGGUC	chr19:1409314-1409573(+)$1	259	118	142	13.7727
AGGCCCAUCUGUGAAAUGGGCCAC	chr17:80188528-80188796(+)$1	268	173	197	15.4345
GCAGGGGUCAGGCAAAGUCCUGCC	chr1:1279004-1279257(-)$1	253	215	239	15.9064
CGGCCUGCGUCUUCGGCAGGUCGU	chr19:13261906-13262150(+)$1	244	200	224	16.2614
CGGGACCCGAGAGAAGGGACGCCG	chr14:105261511-105261787(-)$1	276	240	264	15.6202
agagcccuggaagugagggacugc	chr20:31048887-31049154(-)$1	267	4	28	14.6136
UCCCAUUCUUUCUCUGAAUGGGCC	chr7:2681190-2681440(+)$1	250	76	100	12.7702
GGAGGGUUCCUGGGAAGCUCUGCU	chr1:1154912-1155177(-)$1	265	201	225	14.6482
GUUCUGGGAAUUAAGUCCAAACUC	chr7:158361977-158362236(-)$1	259	200	224	14.2488
CUGCGGGUUUGCACUGCCCGGGUG	chr3:98451767-98452020(+)$1	253	67	91	16.2275
CAGCUGCCAGUUCCAGGAAGUUCU	chr20:60639226-60639505(-)$1	279	46	70	13.7083
AGGCUCCAGGACCAAGGUGGAGUC	chr20:61287185-61287428(+)$1	243	38	62	11.4563
CCGCUGGGGAGCUUGCCCGGCGGC	chr19:660452-660704(-)$1	252	185	209	15.8949
CACGCCGCAAGUUCCACGGGGCCA	chr2:129067719-129067970(-)$1	251	111	135	11.5567

#DB
((.(((((.......)))))..))	chr16:75273910-75274201(-)$1	1	57	81	15.3683
(.((((((.......)))))).))	chr17:80187298-80187548(+)$1	1	10	34	14.6249
.(((..((.......)).))))))	chr8:145684570-145684808(-)$1	1	7	31	14.3547
(..(((((.......)))))..))	chr22:50872358-50872612(+)$1	1	87	111	15.8765
(((((.((.......)).))))))	chr7:5436978-5437230(-)$1	1	68	92	13.9650
((((((((.......)))))))))	chr19:4062844-4063097(-)$1	1	172	196	16.2614
.(.(((((.......))))))...	chr20:62688996-62689248(+)$1	1	75	99	16.1095
(((((.((.......)).))))))	chr1:2232016-2232266(+)$1	1	16	40	13.9650
((((((.(.......).)))))))	chr2:241563326-241563576(+)$1	1	39	63	13.5174
((((.(((.......)))))))))	chr8:144674479-144674746(-)$1	1	153	177	14.7563
(((..(((.......)))..))))	chr16:88729240-88729494(-)$1	1	62	86	14.5516
(((((.((.......)).))))))	chr4:1371133-1371391(+)$1	1	9	33	15.2848
.(((((((.......))))))).)	chr2:242641975-242642257(+)$1	1	135	159	15.7331
((.(((((.......)))))))).	chr9:97847762-97848071(+)$1	1	41	65	14.9570
..((((((.........)))))).	chr20:62583818-62584061(-)$1	1	120	144	11.3035
((((((((.........))))).)	chr14:105854023-105854277(+)$1	1	187	211	11.8983
(((.((((.......)))))))))	chr20:61284786-61285050(+)$1	1	39	63	14.2488
.(((((((.......)))))))..	chr20:61592856-61593115(+)$1	1	113	137	12.7702
((...(((.......)))...)))	chr22:51166632-51166893(+)$1	1	36	60	15.3851
((..((((.......)))).))))	chr11:843229-843445(+)$1	1	141	165	13.9708
((.(((((.........)))))))	chr2:264202-264498(-)$1	1	73	97	11.5366
((.(((.........)))..))).	chr16:1215026-1215331(+)$1	1	44	68	11.2425
(((.((((.......))))..)))	chr16:588256-588488(+)$1	1	164	188	13.4181
(..(((((.........)))))..	chr17:79859880-79860152(-)$1	1	54	78	12.2506
(..(((((.......)))))))))	chr17:80190134-80190409(+)$1	1	94	118	15.7302
((.(((((.......)))))...)	chr6:36646617-36646865(+)$1	1	57	81	16.2399
((...(((.......)))....))	chr16:89359137-89359427(-)$1	1	73	97	15.2157
(.((.(((.......)))..)).)	chr22:39916980-39917260(+)$1	1	97	121	13.5445
((.(((.........)))))))))	chr5:34192389-34192639(-)$1	1	58	82	11.2031
...(((((.......)))))..))	chr7:2673022-2673264(+)$1	1	146	170	15.5154
(..(((((.........)))))..	chr1:8086044-8086308(-)$1	1	238	262	12.1628
(..(((((.......)))))..))	chr22:50873128-50873421(+)$1	1	48	72	15.8765
..((((((.......))))))...	chr17:79966084-79966334(+)$1	1	112	136	14.6881
((((((((.......)))))))))	chr17:79066118-79066369(+)$1	1	150	174	16.2614
((((((.(.......).)))))))	chr17:79674334-79674589(+)$1	1	160	184	13.5174
(..(((((.......))))).)))	chr17:18965299-18965552(+)$1	1	172	196	15.8381
((((((((.........)))))))	chr17:75452176-75452432(+)$1	1	199	223	12.5560
((((((((.......))))...))	chr7:5462133-5462397(-)$1	1	3	27	15.2883
((((((.(.......).)))))))	chr16:75283974-75284203(-)$1	1	19	43	15.8106
(.(((.((.......)).))).))	chr20:32255459-32255706(-)$1	1	219	243	14.0218
((.(((((.......))))).)).	chr7:23508263-23508523(-)$1	1	53	77	14.0931
(((((.((.......)).))))))	chr14:105912549-105912810(+)$1	1	29	53	15.3710
((((.(((.......))).)))))	chr16:89788070-89788313(+)$1	1	194	218	15.9151
(..(((((.......))))).)))	chr9:136920473-136920743(-)$1	1	186	210	16.1333
(((.((((.......)))))))))	chr13:113747322-113747574(+)$1	1	188	212	13.7566
((((((((.......)))).))))	chr16:87896527-87896769(-)$1	1	91	115	14.2195
((((..((.......))..)))..	chr19:1409314-1409573(+)$1	1	118	142	13.7727
.(((((((.......)))))))..	chr17:80188528-80188796(+)$1	1	173	197	15.4345
((((((.(.......).)))))))	chr1:1279004-1279257(-)$1	1	215	239	15.9064
((((((((.......)))))))))	chr19:13261906-13262150(+)$1	1	200	224	16.2614
.(.(.(((.......))).).).)	chr14:105261511-105261787(-)$1	1	240	264	15.6202
((..((((.......)))).))))	chr20:31048887-31049154(-)$1	1	4	28	14.6136
.(((((((.......)))))))..	chr7:2681190-2681440(+)$1	1	76	100	12.7702
((((((((.......)))))).))	chr1:1154912-1155177(-)$1	1	201	225	14.6482
(((.((((.......)))))))))	chr7:158361977-158362236(-)$1	1	200	224	14.2488
((.(((((.......)))))))))	chr3:98451767-98452020(+)$1	1	67	91	16.2275
.((((.((.......)).))))..	chr20:60639226-60639505(-)$1	1	46	70	13.7083
.(((((((.........)))))))	chr20:61287185-61287428(+)$1	1	38	62	11.4563
((((((((.......)))))))))	chr19:660452-660704(-)$1	1	185	209	15.8949
...(((.(.........).)))))	chr2:129067719-129067970(-)$1	1	111	135	11.5567

#PSSM
c : 0.13	f : 0.13	e : 0.09	g : 0.09	b : 0.08	i : 0.08	! : 0.06	= : 0.05	h : 0.05	: : 0.05	d : 0.05	" : 0.03	[ : 0.03	# : 0.03	
g : 0.18	! : 0.13	c : 0.09	f : 0.09	e : 0.08	i : 0.08	[ : 0.05	= : 0.05	h : 0.05	d : 0.05	a : 0.03	b : 0.03	# : 0.03	" : 0.01	
[ : 0.16	f : 0.15	! : 0.15	g : 0.13	i : 0.08	c : 0.05	= : 0.05	h : 0.05	e : 0.05	" : 0.05	d : 0.03	b : 0.01	# : 0.01	
e : 0.28	g : 0.13	f : 0.11	c : 0.09	i : 0.08	[ : 0.06	= : 0.05	! : 0.05	h : 0.03	" : 0.03	b : 0.01	a : 0.01	d : 0.01	
e : 0.26	d : 0.15	g : 0.11	f : 0.09	[ : 0.06	c : 0.06	i : 0.06	! : 0.05	= : 0.05	h : 0.03	" : 0.03	
e : 0.26	c : 0.16	d : 0.13	[ : 0.09	g : 0.09	f : 0.06	= : 0.05	i : 0.05	! : 0.03	h : 0.03	
e : 0.26	b : 0.13	d : 0.13	c : 0.11	[ : 0.08	g : 0.08	f : 0.06	= : 0.05	r : 0.03	i : 0.03	
e : 0.26	b : 0.13	d : 0.13	c : 0.11	a : 0.08	g : 0.08	f : 0.06	= : 0.05	r : 0.03	i : 0.03	
p : 0.83	r : 0.16	
p : 0.83	r : 0.16	
p : 0.83	r : 0.16	
p : 0.83	r : 0.16	
p : 0.83	r : 0.16	
p : 0.83	r : 0.16	
p : 0.83	r : 0.16	
e : 0.19	c : 0.15	b : 0.13	r : 0.13	d : 0.13	a : 0.06	g : 0.06	f : 0.05	= : 0.05	i : 0.01	
e : 0.19	c : 0.15	b : 0.13	r : 0.13	d : 0.13	] : 0.06	g : 0.06	f : 0.05	= : 0.05	i : 0.01	
e : 0.26	c : 0.15	d : 0.13	] : 0.11	g : 0.09	f : 0.06	= : 0.05	i : 0.05	h : 0.03	2 : 0.01	a : 0.01	
e : 0.28	d : 0.15	f : 0.11	g : 0.11	2 : 0.06	i : 0.06	= : 0.05	] : 0.05	c : 0.03	h : 0.03	3 : 0.01	4 : 0.01	
e : 0.31	f : 0.11	g : 0.11	i : 0.08	c : 0.06	2 : 0.06	= : 0.05	h : 0.05	] : 0.05	3 : 0.03	4 : 0.01	a : 0.01	d : 0.01	
f : 0.16	e : 0.13	g : 0.13	c : 0.09	2 : 0.08	i : 0.08	] : 0.06	= : 0.05	h : 0.05	3 : 0.05	d : 0.03	a : 0.01	4 : 0.01	b : 0.01	
e : 0.16	g : 0.13	f : 0.11	c : 0.09	i : 0.08	2 : 0.06	3 : 0.06	] : 0.05	= : 0.05	h : 0.05	d : 0.05	b : 0.03	4 : 0.01	a : 0.01	
e : 0.13	f : 0.13	c : 0.11	g : 0.11	i : 0.08	3 : 0.06	] : 0.06	= : 0.05	h : 0.05	b : 0.05	2 : 0.05	: : 0.03	d : 0.03	4 : 0.01	
f : 0.13	e : 0.11	c : 0.11	g : 0.11	i : 0.08	b : 0.06	: : 0.06	2 : 0.06	= : 0.05	3 : 0.05	h : 0.05	d : 0.03	a : 0.01	] : 0.01	4 : 0.01	

#score	862.4311068258689
#seq	60
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_CDS_m2_run2.txt

#BEAR
fff####a!!bb####eeeeea[eeeee[	chrM:14224-14449(-)$1	225	53	82	13.2586
d!!bb[a"""iiiiiiiii####gggggg	chrM:14287-14501(-)$1	214	52	81	12.6627
d[ccc[ccc[bb[ffffff!!a[a[ffff	chr19:2270413-2270668(+)$1	255	83	112	12.0535
""dddd$$$$$iiiiiiiii$$$$$eeee	chr8:9629761-9630017(+)$1	256	177	206	9.9769
iiiiiiii!!bb####eeeeeeeeeennn	chr17:7476586-7476837(+)$1	251	97	126	10.0641
ggggggg$$$$$a[eeeee####eeeeem	chrM:14167-14397(-)$1	230	101	130	11.1891
a[dddd!!dddd[ffffff"""ggggggg	chr19:4037251-4037475(+)$1	224	44	73	9.1232
eea[cccbb!!hhhhhhhh####eeeeeq	chr19:55543601-55543909(+)$1	308	68	97	9.1450
d[ccc[ccc[bb[ffffff!!a[a[ffff	chr19:2270488-2270722(+)$1	234	8	37	12.0535
gggggdddd"""hhhhhhhh"""eeeee!	chr1:975928-976205(+)$1	277	25	54	9.7948
d!!bb[a"""iiiiiiiii####gggggg	chrM:14301-14521(-)$1	220	72	101	12.6627
dddd!!bb!!bb[a[eeeee"""ffffff	chr1:90493044-90493313(+)$1	269	72	101	12.1258
b[ccc[ccc[bb[eeeeeccc!!ffffff	chr4:83350558-83350797(-)$1	239	86	115	11.3768
fff####a!!bb####eeeeea[eeeee[	chrM:14249-14477(-)$1	228	81	110	13.2586
==========]dddddddd[a[accc[gg	chr16:3767279-3767620(-)$1	341	164	193	8.3683
iiiiiii"""ggggggg[eeeeellleee	chr4:1804556-1804823(+)$1	267	38	67	9.2141
iiiiiii"""bb[ggggggg"""ffffff	chr19:1416346-1416584(+)$1	238	103	132	14.1642
fffccc####bbddddcccccc$$$$$ff	chr20:32251199-32251447(-)$1	248	20	49	8.9213
[============="""dddd!!ddddbb	chr1:22155814-22156070(-)$1	256	60	89	9.3489
hhhhh$$$$$bb"""a[ccc[a[eeeeel	chr19:932635-932866(+)$1	231	93	122	11.6982
=======[dddd[ggggggg[ccc[ccc$	chr6:3259155-3259417(+)$1	262	11	40	9.4777
========[ccc[ccc!!ccca[ffffff	chr15:80215312-80215553(-)$1	241	77	106	11.0423
eee[ccc[a[bb[ffffffgggggggnnn	chr19:1104622-1104880(+)$1	258	121	150	8.3539
fff####a!!bb####eeeeea[eeeee[	chrM:14277-14487(-)$1	210	91	120	13.2586
b[bb"""a!!bbgggggggccc[eeeee!	chr5:154135533-154135767(+)$1	234	94	123	12.4645

#otherMatches

#Seq PSSM
AGUGGGGUUAGCGAUGGAGGUAGGAUUGG	chrM:14224-14449(-)$1	225	53	82	13.2586
GAGGAGUAUCCUGAGGCAUGGGGGUCAGG	chrM:14287-14501(-)$1	214	52	81	12.6627
CUCCGCGGGGGCCGCCGGGGAGCUGGGGG	chr19:2270413-2270668(+)$1	255	83	112	12.0535
ucuaaucaaaaugaggaauguuuuacuuu	chr8:9629761-9630017(+)$1	256	177	206	9.9769
GGCCGUUCAGUGUGCUGGUUUUCUUGACG	chr17:7476586-7476837(+)$1	251	97	126	10.0641
UAUGAAGGAGAGGGGUCAGGGUUGAUUCG	chrM:14167-14397(-)$1	230	101	130	11.1891
GGGAGGGAUGGAGGGCUGGGGAGUUGGGG	chr19:4037251-4037475(+)$1	224	44	73	9.1232
CACGCCCGGAGGUCCCUGGCACCGGAGGG	chr19:55543601-55543909(+)$1	308	68	97	9.1450
CUCCGCGGGGGCCGCCGGGGAGCUGGGGG	chr19:2270488-2270722(+)$1	234	8	37	12.0535
CGCGGGCUGCGAGCACGGCAAGGUCUCUC	chr1:975928-976205(+)$1	277	25	54	9.7948
GAGGAGUAUCCUGAGGCAUGGGGGUCAGG	chrM:14301-14521(-)$1	220	72	101	12.6627
cagggaguaggggaaggaggggaaguagg	chr1:90493044-90493313(+)$1	269	72	101	12.1258
CUCGCUCCCAGCUCCGCCCGGCAGGGGGC	chr4:83350558-83350797(-)$1	239	86	115	11.3768
AGUGGGGUUAGCGAUGGAGGUAGGAUUGG	chrM:14249-14477(-)$1	228	81	110	13.2586
GCUGCGGGCGCCGGCGCUGGCGGCCGUGC	chr16:3767279-3767620(-)$1	341	164	193	8.3683
GGGCUGCCUCGGGGGCGUGCCUGAGCCGG	chr4:1804556-1804823(+)$1	267	38	67	9.2141
UCCCAGGGAAAGCAGGCAGGAUGGGAGAG	chr19:1416346-1416584(+)$1	238	103	132	14.1642
CAGCCCAGCGCCGGACGCGUAGUCAAUCC	chr20:32251199-32251447(-)$1	248	20	49	8.9213
UGGACGUGGAGUUCAAGCCACUCGCCCCU	chr1:22155814-22156070(-)$1	256	60	89	9.3489
AGCAGUUUAAGCAGGUGAGUGGGCGCGUC	chr19:932635-932866(+)$1	231	93	122	11.6982
GUCUCUCGGUGCUCGCUCCAUCGGGUCUG	chr6:3259155-3259417(+)$1	262	11	40	9.4777
cgggcgccgggcggggcugggcggggacg	chr15:80215312-80215553(-)$1	241	77	106	11.0423
CGGGCGCAGGCUCCCCCGGGCGCCGCAGG	chr19:1104622-1104880(+)$1	258	121	150	8.3539
AGUGGGGUUAGCGAUGGAGGUAGGAUUGG	chrM:14277-14487(-)$1	210	91	120	13.2586
GAGCUGCCGGAgccgcgggcgcggggcgc	chr5:154135533-154135767(+)$1	234	94	123	12.4645

#DB
(((....(..((....((((((.(((((.	chrM:14224-14449(-)$1	1	53	82	13.2586
(..((.(...(((((((((....((((((	chrM:14287-14501(-)$1	1	52	81	12.6627
(.(((.(((.((.((((((..(.(.((((	chr19:2270413-2270668(+)$1	1	83	112	12.0535
..((((.....(((((((((.....((((	chr8:9629761-9630017(+)$1	1	177	206	9.9769
((((((((..((....((((((((((...	chr17:7476586-7476837(+)$1	1	97	126	10.0641
(((((((.....(.(((((....(((((.	chrM:14167-14397(-)$1	1	101	130	11.1891
(.((((..((((.((((((...(((((((	chr19:4037251-4037475(+)$1	1	44	73	9.1232
(((.(((((..((((((((....(((((.	chr19:55543601-55543909(+)$1	1	68	97	9.1450
(.(((.(((.((.((((((..(.(.((((	chr19:2270488-2270722(+)$1	1	8	37	12.0535
(((((((((...((((((((...(((((.	chr1:975928-976205(+)$1	1	25	54	9.7948
(..((.(...(((((((((....((((((	chrM:14301-14521(-)$1	1	72	101	12.6627
((((..((..((.(.(((((...((((((	chr1:90493044-90493313(+)$1	1	72	101	12.1258
(.(((.(((.((.((((((((..((((((	chr4:83350558-83350797(-)$1	1	86	115	11.3768
(((....(..((....((((((.(((((.	chrM:14249-14477(-)$1	1	81	110	13.2586
)))))))))).))))((((.(.((((.((	chr16:3767279-3767620(-)$1	1	164	193	8.3683
(((((((...(((((((.(((((...)))	chr4:1804556-1804823(+)$1	1	38	67	9.2141
(((((((...((.(((((((...((((((	chr19:1416346-1416584(+)$1	1	103	132	14.1642
)))(((....((((((((((((.....((	chr20:32251199-32251447(-)$1	1	20	49	8.9213
.(((((((((((((...((((..((((((	chr1:22155814-22156070(-)$1	1	60	89	9.3489
(((((.....((...(.(((.(.(((((.	chr19:932635-932866(+)$1	1	93	122	11.6982
(((((((.((((.(((((((.(((.(((.	chr6:3259155-3259417(+)$1	1	11	40	9.4777
((((((((.(((.(((..((((.((((((	chr15:80215312-80215553(-)$1	1	77	106	11.0423
(((.(((.(.((.(((((((((((((...	chr19:1104622-1104880(+)$1	1	121	150	8.3539
(((....(..((....((((((.(((((.	chrM:14277-14487(-)$1	1	91	120	13.2586
(.((...(..((((((((((((.(((((.	chr5:154135533-154135767(+)$1	1	94	123	12.4645

#PSSM
d : 0.20	f : 0.16	i : 0.12	= : 0.12	g : 0.08	e : 0.08	b : 0.08	" : 0.04	a : 0.04	[ : 0.04	h : 0.04	
[ : 0.20	f : 0.16	= : 0.16	i : 0.12	! : 0.08	g : 0.08	e : 0.08	" : 0.04	d : 0.04	h : 0.04	
f : 0.16	= : 0.16	c : 0.12	d : 0.12	i : 0.12	! : 0.08	g : 0.08	a : 0.04	h : 0.04	e : 0.04	b : 0.04	
c : 0.16	= : 0.16	# : 0.12	b : 0.12	d : 0.12	i : 0.12	g : 0.08	[ : 0.08	h : 0.04	
c : 0.24	= : 0.16	# : 0.12	i : 0.12	b : 0.08	d : 0.08	g : 0.08	! : 0.04	h : 0.04	" : 0.04	
[ : 0.20	= : 0.16	# : 0.12	d : 0.12	i : 0.12	c : 0.12	g : 0.04	! : 0.04	$ : 0.04	" : 0.04	
c : 0.20	# : 0.16	= : 0.16	i : 0.12	a : 0.08	$ : 0.08	g : 0.04	! : 0.04	d : 0.04	b : 0.04	" : 0.04	
a : 0.16	" : 0.16	c : 0.12	$ : 0.12	= : 0.12	b : 0.08	[ : 0.08	i : 0.04	! : 0.04	d : 0.04	# : 0.04	
! : 0.24	" : 0.16	c : 0.12	$ : 0.12	d : 0.12	= : 0.08	b : 0.04	# : 0.04	[ : 0.04	a : 0.04	
! : 0.28	" : 0.20	[ : 0.16	$ : 0.12	d : 0.08	= : 0.08	# : 0.04	c : 0.04	
b : 0.51	i : 0.08	$ : 0.08	d : 0.08	! : 0.04	" : 0.04	] : 0.04	g : 0.04	= : 0.04	c : 0.04	
b : 0.51	i : 0.12	d : 0.12	$ : 0.04	h : 0.04	" : 0.04	g : 0.04	= : 0.04	c : 0.04	
[ : 0.36	# : 0.16	i : 0.12	h : 0.08	d : 0.08	g : 0.08	a : 0.04	= : 0.04	" : 0.04	
# : 0.16	f : 0.16	g : 0.16	i : 0.12	h : 0.08	d : 0.08	[ : 0.04	a : 0.04	e : 0.04	= : 0.04	" : 0.04	c : 0.04	
# : 0.16	f : 0.16	g : 0.16	i : 0.12	e : 0.08	h : 0.08	d : 0.08	" : 0.08	[ : 0.04	c : 0.04	
# : 0.16	f : 0.16	g : 0.16	i : 0.12	e : 0.12	h : 0.08	d : 0.08	" : 0.04	a : 0.04	c : 0.04	
e : 0.28	f : 0.16	g : 0.16	i : 0.12	h : 0.08	d : 0.04	c : 0.04	" : 0.04	[ : 0.04	! : 0.04	
e : 0.28	f : 0.16	i : 0.12	g : 0.12	h : 0.08	d : 0.08	c : 0.08	[ : 0.04	! : 0.04	
e : 0.28	f : 0.16	c : 0.16	i : 0.12	g : 0.12	h : 0.08	d : 0.08	
e : 0.24	c : 0.20	# : 0.16	g : 0.12	! : 0.08	i : 0.04	" : 0.04	h : 0.04	[ : 0.04	d : 0.04	
e : 0.20	# : 0.16	" : 0.16	c : 0.16	! : 0.08	[ : 0.08	$ : 0.04	a : 0.04	d : 0.04	g : 0.04	
a : 0.28	# : 0.16	" : 0.16	c : 0.12	e : 0.08	! : 0.08	$ : 0.04	[ : 0.04	g : 0.04	
[ : 0.32	# : 0.16	" : 0.12	$ : 0.08	e : 0.08	g : 0.08	! : 0.08	a : 0.04	c : 0.04	
e : 0.36	g : 0.16	f : 0.16	a : 0.08	$ : 0.08	c : 0.08	l : 0.04	d : 0.04	
e : 0.36	g : 0.16	f : 0.16	[ : 0.12	$ : 0.08	c : 0.04	l : 0.04	d : 0.04	
e : 0.39	f : 0.24	g : 0.16	c : 0.08	l : 0.04	$ : 0.04	d : 0.04	
e : 0.39	f : 0.24	g : 0.12	n : 0.08	[ : 0.04	$ : 0.04	d : 0.04	c : 0.04	
e : 0.39	f : 0.28	g : 0.16	n : 0.08	b : 0.04	c : 0.04	
f : 0.28	g : 0.16	[ : 0.12	e : 0.08	n : 0.08	! : 0.08	m : 0.04	q : 0.04	b : 0.04	l : 0.04	$ : 0.04	

#score	275.058508164184
#seq	25
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_UTR_m1_run2.txt

#BEAR
#eeeeerrrrrrrrreeeee	chr1:25570455-25570717(-)$1	262	81	101	11.5638
ddd[cccssssssssssccc	chr5:180664426-180664677(-)$1	251	127	147	12.0910
!eeeeewwwwwwwwwwwwww	chr11:61732663-61732914(-)$1	251	198	218	16.2542
gggggggssssssssssggg	chr17:74732044-74732300(-)$1	256	32	52	11.8606
iiiiiissssssssssiiii	chr2:61753369-61753629(-)$1	260	227	247	12.4073
ffffffrrrrrrrrrfffff	chr6:160169357-160169583(+)$1	226	29	49	9.1710
ggg[bbwwwwwwwwwwwwww	chr7:26230497-26230748(-)$1	251	80	100	15.0472
:eeeeesssssssssseeee	chr14:70235894-70236146(+)$1	252	62	82	12.6495
Geeeeerrrrrrrrreeeee	chr12:132195918-132196167(+)$1	249	6	26	10.9879
:eeeeesssssssssseeee	chr3:50098912-50099160(+)$1	248	197	217	12.6495
e[ccc[arrrrrrrrra]cc	chr6:31937123-31937379(+)$1	256	39	59	10.4964
!eeeeerrrrrrrrreeeee	chr3:14519997-14520267(+)$1	270	63	83	11.6202
ddddvvvvvvvvvvvvvddd	chr11:61732574-61732821(-)$1	247	210	230	15.1010
#ddddwwwwwwwwwwwwwwd	chr10:64937295-64937547(-)$1	252	221	241	15.3945
dd"""bbssssssssssbb3	chr4:83812052-83812313(-)$1	261	99	119	11.0985
&ffffffssssssssssfff	chr6:160511063-160511337(+)$1	274	134	154	10.8443
======ttttttttttt===	chr17:30697064-30697294(+)$1	230	173	193	16.6659
deeeeerrrrrrrrreeeee	chr19:39125685-39125935(+)$1	250	101	121	11.3862
iiiiiiyyyyyyyyyyyyyy	chr17:74730954-74731215(-)$1	261	71	91	13.8565
d"""bbtttttttttttbb3	chr17:30697028-30697264(+)$1	236	55	75	15.0905
iiiiiiirrrrrrrrriiii	chr7:42974664-42974963(+)$1	299	235	255	10.0210
Deeeeettttttttttteee	chr3:3189804-3190067(+)$1	263	6	26	16.3129
c:ddddssssssssssdddd	chr5:86690674-86690930(-)$1	256	218	238	11.1239
[eeeeerrrrrrrrreeeee	chr15:45008481-45008722(+)$1	241	69	89	11.5584
gg[cccyyyyyyyyyyyyyy	chr19:51307649-51307908(-)$1	259	79	99	13.6298
ddddvvvvvvvvvvvvvddd	chr1:226496628-226496885(-)$1	257	196	216	15.1010
eeeeevvvvvvvvvvvvvee	chr7:104742571-104742869(+)$1	298	51	71	16.1528
#eeeeettttttttttteee	chr4:83276240-83276532(-)$1	292	261	281	17.3139
iiiiii^^^^^^^^^^^^^^	chr2:170429963-170430248(-)$1	285	211	231	10.3989
heeeeerrrrrrrrreeeee	chr1:11083311-11083571(+)$1	260	98	118	11.1982
ggddddtttttttttttddd	chr1:19440005-19440262(-)$1	257	221	241	16.1188
""ddddrrrrrrrrrdddd4	chr16:720283-720560(+)$1	277	247	267	10.2367

#otherMatches

#Seq PSSM
UGUGCAUUAGCAAAUUGCAC	chr1:25570455-25570717(-)$1	262	81	101	11.5638
CUGUUAGUAUAUCUAGUCUG	chr5:180664426-180664677(-)$1	251	127	147	12.0910
UUUUAGGCUUACCAUCUAAA	chr11:61732663-61732914(-)$1	251	198	218	16.2542
AAGAGGAAGGAGCGGUGUCC	chr17:74732044-74732300(-)$1	256	32	52	11.8606
UUCUUGCAAAUAGUCCUAAG	chr2:61753369-61753629(-)$1	260	227	247	12.4073
GUUUACGCCUGAUAGGUAAA	chr6:160169357-160169583(+)$1	226	29	49	9.1710
AAGUGAUCAUUAAUAAAGCU	chr7:26230497-26230748(-)$1	251	80	100	15.0472
GUCAGCUGGCAGGUUUGUUG	chr14:70235894-70236146(+)$1	252	62	82	12.6495
GCCCUGGCUCAGGAACAGGG	chr12:132195918-132196167(+)$1	249	6	26	10.9879
AGUGGAAAAGUUUAGAUCUA	chr3:50098912-50099160(+)$1	248	197	217	12.6495
UGGUUGAGGUUGUAUAUGAG	chr6:31937123-31937379(+)$1	256	39	59	10.4964
AUUGCCUGGAUAUAUGGUGA	chr3:14519997-14520267(+)$1	270	63	83	11.6202
GAGAUGCAUUAACCUAUUCU	chr11:61732574-61732821(-)$1	247	210	230	15.1010
GUUUCUCUUGCUCCUCUUUG	chr10:64937295-64937547(-)$1	252	221	241	15.3945
UCUUCGCCGGUCCUUAAGCU	chr4:83812052-83812313(-)$1	261	99	119	11.0985
UUCAACUAACUCCCUUCAGU	chr6:160511063-160511337(+)$1	274	134	154	10.8443
AUGUGUAACAAUAUUUAAUG	chr17:30697064-30697294(+)$1	230	173	193	16.6659
UGGGGCUAAGGGGGUGCCCC	chr19:39125685-39125935(+)$1	250	101	121	11.3862
AGGUUAUUUUGUAACAUUUG	chr17:74730954-74731215(-)$1	261	71	91	13.8565
CAUACCACCCUAGUAAAGGC	chr17:30697028-30697264(+)$1	236	55	75	15.0905
GCUAGAGCCUGCUGUCCUCU	chr7:42974664-42974963(+)$1	299	235	255	10.0210
ACUUCUGAGUUACAUAAAGA	chr3:3189804-3190067(+)$1	263	6	26	16.3129
UUGUCCAUUAUUAAAGGGAU	chr5:86690674-86690930(-)$1	256	218	238	11.1239
GGAGGUAAGUUUUUGACCUU	chr15:45008481-45008722(+)$1	241	69	89	11.5584
GGUGAGGUUCUUAAGUUUAU	chr19:51307649-51307908(-)$1	259	79	99	13.6298
GUGGUCCCCUAGUCCUCCCA	chr1:226496628-226496885(-)$1	257	196	216	15.1010
GUACCCCAAAACAAAGAAGG	chr7:104742571-104742869(+)$1	298	51	71	16.1528
AUUAACAAGUCAGUAAAGUU	chr4:83276240-83276532(-)$1	292	261	281	17.3139
GCUGAGACCCCAUUCAUUCA	chr2:170429963-170430248(-)$1	285	211	231	10.3989
UACUCUUUAUUUCAUGGAGU	chr1:11083311-11083571(+)$1	260	98	118	11.1982
AAACGGCAUCUCCCCCACCG	chr1:19440005-19440262(-)$1	257	221	241	16.1188
CCCCUCUAUGACCCUGAGGC	chr16:720283-720560(+)$1	277	247	267	10.2367

#DB
.(((((.........)))))	chr1:25570455-25570717(-)$1	1	81	101	11.5638
(((.(((..........)))	chr5:180664426-180664677(-)$1	1	127	147	12.0910
.(((((..............	chr11:61732663-61732914(-)$1	1	198	218	16.2542
(((((((..........)))	chr17:74732044-74732300(-)$1	1	32	52	11.8606
((((((..........))))	chr2:61753369-61753629(-)$1	1	227	247	12.4073
((((((.........)))))	chr6:160169357-160169583(+)$1	1	29	49	9.1710
(((.((..............	chr7:26230497-26230748(-)$1	1	80	100	15.0472
.(((((..........))))	chr14:70235894-70236146(+)$1	1	62	82	12.6495
((((((.........)))))	chr12:132195918-132196167(+)$1	1	6	26	10.9879
.(((((..........))))	chr3:50098912-50099160(+)$1	1	197	217	12.6495
(.(((.(.........).))	chr6:31937123-31937379(+)$1	1	39	59	10.4964
.(((((.........)))))	chr3:14519997-14520267(+)$1	1	63	83	11.6202
((((.............)))	chr11:61732574-61732821(-)$1	1	210	230	15.1010
.((((..............)	chr10:64937295-64937547(-)$1	1	221	241	15.3945
((...((..........)).	chr4:83812052-83812313(-)$1	1	99	119	11.0985
.((((((..........)))	chr6:160511063-160511337(+)$1	1	134	154	10.8443
((((((...........)))	chr17:30697064-30697294(+)$1	1	173	193	16.6659
((((((.........)))))	chr19:39125685-39125935(+)$1	1	101	121	11.3862
((((((..............	chr17:74730954-74731215(-)$1	1	71	91	13.8565
(...((...........)).	chr17:30697028-30697264(+)$1	1	55	75	15.0905
(((((((.........))))	chr7:42974664-42974963(+)$1	1	235	255	10.0210
((((((...........)))	chr3:3189804-3190067(+)$1	1	6	26	16.3129
).((((..........))))	chr5:86690674-86690930(-)$1	1	218	238	11.1239
.(((((.........)))))	chr15:45008481-45008722(+)$1	1	69	89	11.5584
((.(((..............	chr19:51307649-51307908(-)$1	1	79	99	13.6298
((((.............)))	chr1:226496628-226496885(-)$1	1	196	216	15.1010
(((((.............))	chr7:104742571-104742869(+)$1	1	51	71	16.1528
.(((((...........)))	chr4:83276240-83276532(-)$1	1	261	281	17.3139
((((((..............	chr2:170429963-170430248(-)$1	1	211	231	10.3989
)(((((.........)))))	chr1:11083311-11083571(+)$1	1	98	118	11.1982
))((((...........)))	chr1:19440005-19440262(-)$1	1	221	241	16.1188
..((((.........)))).	chr16:720283-720560(+)$1	1	247	267	10.2367

#PSSM
d : 0.18	g : 0.12	i : 0.12	# : 0.09	! : 0.06	: : 0.06	e : 0.06	f : 0.03	G : 0.03	& : 0.03	= : 0.03	D : 0.03	c : 0.03	[ : 0.03	h : 0.03	" : 0.03	
e : 0.37	d : 0.15	g : 0.12	i : 0.12	f : 0.06	" : 0.06	[ : 0.03	= : 0.03	: : 0.03	
e : 0.37	d : 0.21	i : 0.12	g : 0.06	f : 0.06	" : 0.06	c : 0.03	= : 0.03	[ : 0.03	
e : 0.37	d : 0.18	i : 0.12	[ : 0.06	f : 0.06	c : 0.06	" : 0.06	g : 0.03	= : 0.03	
e : 0.37	i : 0.12	d : 0.12	c : 0.09	f : 0.06	b : 0.06	v : 0.06	g : 0.03	" : 0.03	= : 0.03	
e : 0.34	i : 0.12	b : 0.09	v : 0.09	d : 0.09	c : 0.06	f : 0.06	g : 0.03	[ : 0.03	w : 0.03	= : 0.03	
r : 0.25	t : 0.15	s : 0.12	w : 0.09	v : 0.09	y : 0.06	c : 0.03	g : 0.03	a : 0.03	b : 0.03	f : 0.03	i : 0.03	^ : 0.03	
r : 0.31	s : 0.25	t : 0.15	w : 0.09	v : 0.09	y : 0.06	^ : 0.03	
r : 0.31	s : 0.25	t : 0.15	w : 0.09	v : 0.09	y : 0.06	^ : 0.03	
r : 0.31	s : 0.25	t : 0.15	w : 0.09	v : 0.09	y : 0.06	^ : 0.03	
r : 0.31	s : 0.25	t : 0.15	w : 0.09	v : 0.09	y : 0.06	^ : 0.03	
r : 0.31	s : 0.25	t : 0.15	w : 0.09	v : 0.09	y : 0.06	^ : 0.03	
r : 0.31	s : 0.25	t : 0.15	w : 0.09	v : 0.09	y : 0.06	^ : 0.03	
r : 0.31	s : 0.25	t : 0.15	w : 0.09	v : 0.09	y : 0.06	^ : 0.03	
r : 0.31	s : 0.25	t : 0.15	w : 0.09	v : 0.09	y : 0.06	^ : 0.03	
s : 0.25	e : 0.18	t : 0.15	w : 0.09	v : 0.09	r : 0.06	y : 0.06	f : 0.03	^ : 0.03	d : 0.03	
e : 0.25	t : 0.15	s : 0.12	w : 0.09	v : 0.09	i : 0.06	y : 0.06	d : 0.06	f : 0.03	a : 0.03	^ : 0.03	
e : 0.31	d : 0.15	w : 0.09	i : 0.06	f : 0.06	b : 0.06	y : 0.06	c : 0.03	g : 0.03	] : 0.03	= : 0.03	v : 0.03	^ : 0.03	
e : 0.34	d : 0.15	w : 0.09	c : 0.06	i : 0.06	f : 0.06	b : 0.06	y : 0.06	g : 0.03	= : 0.03	^ : 0.03	
e : 0.34	d : 0.15	c : 0.06	w : 0.06	i : 0.06	f : 0.06	3 : 0.06	y : 0.06	g : 0.03	= : 0.03	^ : 0.03	4 : 0.03	

#score	415.4037491052438
#seq	32
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_UTR_m2_run2.txt

#BEAR
ddddooooooddddd	chr15:44063534-44063792(+)$1	258	167	182	11.9365
ddddoooooodddd:	chr11:2159601-2159812(-)$1	211	126	141	11.5096
ddddoooooodddd]	chr11:61583497-61583751(-)$1	254	117	132	12.3459
ddddoooooodddd:	chr16:447639-447891(+)$1	252	133	148	11.5096
ddddooooooddddA	chr11:2160111-2160318(-)$1	207	162	177	11.3236
ddddoooooodddd:	chr19:7977889-7978183(+)$1	294	97	112	11.5096
ccccooooooccc33	chr3:10320938-10321208(+)$1	270	182	197	10.5555
[cccooooooccc]g	chr12:66270600-66270943(+)$1	343	184	199	10.2919
eeeeooooooeeeee	chr17:43238553-43238834(-)$1	281	251	266	10.8856
eeeeooooooeeeee	chr12:66357111-66357364(+)$1	253	66	81	10.8856
ddddoooooodddd]	chr2:183902770-183903030(-)$1	260	151	166	12.3459
"cccooooooccc44	chr11:2159572-2159777(-)$1	205	181	196	10.4608
ggggooooooggggg	chr17:73997213-73997526(+)$1	313	26	41	9.6920
ddddoooooodddd]	chr16:30535384-30535620(-)$1	236	49	64	12.3459
!cccooooooccc]d	chr19:51302263-51302556(-)$1	293	52	67	10.3025
ddddoooooodddd:	chr16:4740528-4740796(+)$1	268	102	117	11.5096
"""aooooooa333c	chr11:2150415-2150631(-)$1	216	33	48	9.3608
!!cccooooooccc]	chr3:49045534-49045776(+)$1	242	121	136	9.0492
ddddoooooodddd]	chr16:89894829-89895118(+)$1	289	230	245	12.3459
ee[aooooooa]eee	chr3:50374570-50374902(-)$1	332	76	91	10.3704
eeeeooooooeeeee	chr16:29819095-29819399(+)$1	304	76	91	10.8856
eeeeooooooeeeee	chr15:100106532-100106798(+)$1	266	116	131	10.8856
eeeeooooooeeeee	chr20:62526561-62526813(+)$1	252	109	124	10.8856
ddddoooooodddd:	chr7:5569508-5569773(-)$1	265	91	106	11.5096
eeeeooooooeeeee	chr11:2152623-2152827(-)$1	204	113	128	10.8856
eeeeooooooeeeee	chr11:2152652-2152857(-)$1	205	143	158	10.8856
ddddoooooodddd:	chr17:43225820-43226096(+)$1	276	227	242	11.5096
!cccooooooccc]e	chr6:30710915-30711169(-)$1	254	167	182	10.4391
ddddoooooodddd:	chr7:32931180-32931423(-)$1	243	49	64	11.5096
ddddoooooodddd2	chr2:48010571-48010849(+)$1	278	97	112	12.1452
eeeeooooooeeeee	chr17:4618927-4619231(+)$1	304	279	294	10.8856
ddddoooooodddd2	chr11:3013183-3013452(-)$1	269	32	47	12.1452
ddddooooooddddC	chr12:123465236-123465492(+)$1	256	131	146	11.1746
ddddoooooodddd]	chr1:53373348-53373622(-)$1	274	166	181	12.3459
dd[aooooooa]ddd	chr13:113539347-113539694(+)$1	347	281	296	10.7880
ddddoooooodddd:	chr2:28974735-28975049(+)$1	314	167	182	11.5096
eeeeooooooeeeee	chr7:150777532-150777780(-)$1	248	5	20	10.8856
:cccoooooocccee	chr7:150777580-150777868(-)$1	288	108	123	9.5420
"cccooooooccc22	chr2:242707403-242707653(+)$1	250	90	105	10.2225
ddddoooooodddd3	chr12:109124342-109124606(-)$1	264	222	237	12.2986
!cccooooooccc22	chr2:11727752-11728087(+)$1	335	22	37	10.3384
a[cccooooooccc]	chr14:105259212-105259453(-)$1	241	38	53	8.8908
eeeeooooooeeeee	chr10:21823265-21823547(+)$1	282	201	216	10.8856
ddddoooooodddde	chr11:71949928-71950195(+)$1	267	135	150	12.0732
ggggooooooggggg	chr11:93474392-93474662(-)$1	270	18	33	9.6920
eeeeooooooeeeee	chr12:124457853-124458145(+)$1	292	187	202	10.8856
ddddoooooodddd]	chr11:2154655-2154858(-)$1	203	9	24	12.3459
gg[aooooooa]ggg	chr17:43225919-43226157(+)$1	238	189	204	9.7082
ddddooooooddddc	chr7:150038500-150038761(-)$1	261	62	77	11.9873
a[bboooooobb]a]	chr16:69419310-69419573(-)$1	263	110	125	8.8334
ddddoooooodddd5	chr7:1577275-1577537(+)$1	262	70	85	11.5410
eeeeooooooeeeee	chr2:139259400-139259732(+)$1	332	249	264	10.8856
ddddoooooodddd]	chr20:60709738-60709992(+)$1	254	139	154	12.3459
ddddoooooodddd3	chr8:101963111-101963379(-)$1	268	216	231	12.2986
ddddoooooodddd]	chr11:120894821-120895085(+)$1	264	64	79	12.3459

#otherMatches

#Seq PSSM
CAUUUGGAACAGUGA	chr15:44063534-44063792(+)$1	258	167	182	11.9365
CUGGCCCGCCCCAGC	chr11:2159601-2159812(-)$1	211	126	141	11.5096
GGGAGUCACAUCCUG	chr11:61583497-61583751(-)$1	254	117	132	12.3459
GGCCAAGUUAGGCCA	chr16:447639-447891(+)$1	252	133	148	11.5096
UCGGCCCAAACCGAG	chr11:2160111-2160318(-)$1	207	162	177	11.3236
GUAUUUUAUUGUACU	chr19:7977889-7978183(+)$1	294	97	112	11.5096
CAGCCAAAAUGCUCC	chr3:10320938-10321208(+)$1	270	182	197	10.5555
UGGGUGCUUUCUUUG	chr12:66270600-66270943(+)$1	343	184	199	10.2919
GCUGGUGAAACGGCU	chr17:43238553-43238834(-)$1	281	251	266	10.8856
AUCugggguggggug	chr12:66357111-66357364(+)$1	253	66	81	10.8856
GCCCGUGACUgggcg	chr2:183902770-183903030(-)$1	260	151	166	12.3459
CUGCCCCGUCGCACA	chr11:2159572-2159777(-)$1	205	181	196	10.4608
GGCUGAACUGGGCUG	chr17:73997213-73997526(+)$1	313	26	41	9.6920
UGCCUGGCUUGGCAA	chr16:30535384-30535620(-)$1	236	49	64	12.3459
CGCUGCCCUAAGCAC	chr19:51302263-51302556(-)$1	293	52	67	10.3025
augcugucacgcaua	chr16:4740528-4740796(+)$1	268	102	117	11.5096
CUUGUCUCCUCCCCG	chr11:2150415-2150631(-)$1	216	33	48	9.3608
GGGUCGCAAAGGACA	chr3:49045534-49045776(+)$1	242	121	136	9.0492
GCUCAACGAGGAGCA	chr16:89894829-89895118(+)$1	289	230	245	12.3459
GUACACGCACGCACG	chr3:50374570-50374902(-)$1	332	76	91	10.3704
CCGCUAGGCCGUGGG	chr16:29819095-29819399(+)$1	304	76	91	10.8856
ggcuggauggggcuc	chr15:100106532-100106798(+)$1	266	116	131	10.8856
gggcaggugagcucg	chr20:62526561-62526813(+)$1	252	109	124	10.8856
GCCUGGGCUGGGGCG	chr7:5569508-5569773(-)$1	265	91	106	11.5096
cagcacacacguugc	chr11:2152623-2152827(-)$1	204	113	128	10.8856
cagcacacacguugc	chr11:2152652-2152857(-)$1	205	143	158	10.8856
GCUUGGGUGGAAGCG	chr17:43225820-43226096(+)$1	276	227	242	11.5096
ACAAAUAAAAUUGAU	chr6:30710915-30711169(-)$1	254	167	182	10.4391
GCAGAGGACGCUGCU	chr7:32931180-32931423(-)$1	243	49	64	11.5096
AGCGGCGGGGCGCUU	chr2:48010571-48010849(+)$1	278	97	112	12.1452
GGGCUCCGAUGCCCU	chr17:4618927-4619231(+)$1	304	279	294	10.8856
gcggguggggccgcg	chr11:3013183-3013452(-)$1	269	32	47	12.1452
GCGCGGGAAAGCGCC	chr12:123465236-123465492(+)$1	256	131	146	11.1746
AGAGUCUUCUUUCUG	chr1:53373348-53373622(-)$1	274	166	181	12.3459
AGACGUAUGAGCUUC	chr13:113539347-113539694(+)$1	347	281	296	10.7880
GGUGAGAGAACGCCG	chr2:28974735-28975049(+)$1	314	167	182	11.5096
UCAUGUAGGGGUGGC	chr7:150777532-150777780(-)$1	248	5	20	10.8856
GCCUGCGGGGAGGGC	chr7:150777580-150777868(-)$1	288	108	123	9.5420
ACCUGGUUGAAGGGA	chr2:242707403-242707653(+)$1	250	90	105	10.2225
UAGCGGGGCAGCUGG	chr12:109124342-109124606(-)$1	264	222	237	12.2986
AAAAUAUAUUUUUGG	chr2:11727752-11728087(+)$1	335	22	37	10.3384
CGGCUGGGGGAGGUG	chr14:105259212-105259453(-)$1	241	38	53	8.8908
Ugccgggccgggcgg	chr10:21823265-21823547(+)$1	282	201	216	10.8856
GCCCGGGACAGGGUC	chr11:71949928-71950195(+)$1	267	135	150	12.0732
UUGGAGGAGGUCGGC	chr11:93474392-93474662(-)$1	270	18	33	9.6920
CUCGGGAUGGCGGGG	chr12:124457853-124458145(+)$1	292	187	202	10.8856
GGAGUGCUGUUUCCG	chr11:2154655-2154858(-)$1	203	9	24	12.3459
GUGGGCUCUGCGGCA	chr17:43225919-43226157(+)$1	238	189	204	9.7082
GGUCAGGGGAGACCU	chr7:150038500-150038761(-)$1	261	62	77	11.9873
CGCCGGGGAAGGGGG	chr16:69419310-69419573(-)$1	263	110	125	8.8334
UCUUGUUGUGGGGGU	chr7:1577275-1577537(+)$1	262	70	85	11.5410
GUCUCCACCAGGACU	chr2:139259400-139259732(+)$1	332	249	264	10.8856
UAGCCACGGAGCUGC	chr20:60709738-60709992(+)$1	254	139	154	12.3459
GGGACGCAUAUCCUG	chr8:101963111-101963379(-)$1	268	216	231	12.2986
CUGGCCGGGACCAGG	chr11:120894821-120895085(+)$1	264	64	79	12.3459

#DB
((((......)))))	chr15:44063534-44063792(+)$1	1	167	182	11.9365
((((......)))).	chr11:2159601-2159812(-)$1	1	126	141	11.5096
((((......)))).	chr11:61583497-61583751(-)$1	1	117	132	12.3459
((((......)))).	chr16:447639-447891(+)$1	1	133	148	11.5096
((((......)))))	chr11:2160111-2160318(-)$1	1	162	177	11.3236
((((......)))).	chr19:7977889-7978183(+)$1	1	97	112	11.5096
((((......)))..	chr3:10320938-10321208(+)$1	1	182	197	10.5555
.(((......))).)	chr12:66270600-66270943(+)$1	1	184	199	10.2919
((((......)))))	chr17:43238553-43238834(-)$1	1	251	266	10.8856
((((......)))))	chr12:66357111-66357364(+)$1	1	66	81	10.8856
((((......)))).	chr2:183902770-183903030(-)$1	1	151	166	12.3459
.(((......)))..	chr11:2159572-2159777(-)$1	1	181	196	10.4608
((((......)))))	chr17:73997213-73997526(+)$1	1	26	41	9.6920
((((......)))).	chr16:30535384-30535620(-)$1	1	49	64	12.3459
.(((......))).)	chr19:51302263-51302556(-)$1	1	52	67	10.3025
((((......)))).	chr16:4740528-4740796(+)$1	1	102	117	11.5096
...(......)...)	chr11:2150415-2150631(-)$1	1	33	48	9.3608
..(((......))).	chr3:49045534-49045776(+)$1	1	121	136	9.0492
((((......)))).	chr16:89894829-89895118(+)$1	1	230	245	12.3459
((.(......).)))	chr3:50374570-50374902(-)$1	1	76	91	10.3704
((((......)))))	chr16:29819095-29819399(+)$1	1	76	91	10.8856
((((......)))))	chr15:100106532-100106798(+)$1	1	116	131	10.8856
((((......)))))	chr20:62526561-62526813(+)$1	1	109	124	10.8856
((((......)))).	chr7:5569508-5569773(-)$1	1	91	106	11.5096
((((......)))))	chr11:2152623-2152827(-)$1	1	113	128	10.8856
((((......)))))	chr11:2152652-2152857(-)$1	1	143	158	10.8856
((((......)))).	chr17:43225820-43226096(+)$1	1	227	242	11.5096
.(((......))).)	chr6:30710915-30711169(-)$1	1	167	182	10.4391
((((......)))).	chr7:32931180-32931423(-)$1	1	49	64	11.5096
((((......)))).	chr2:48010571-48010849(+)$1	1	97	112	12.1452
((((......)))))	chr17:4618927-4619231(+)$1	1	279	294	10.8856
((((......)))).	chr11:3013183-3013452(-)$1	1	32	47	12.1452
((((......)))))	chr12:123465236-123465492(+)$1	1	131	146	11.1746
((((......)))).	chr1:53373348-53373622(-)$1	1	166	181	12.3459
((.(......).)))	chr13:113539347-113539694(+)$1	1	281	296	10.7880
((((......)))).	chr2:28974735-28975049(+)$1	1	167	182	11.5096
((((......)))))	chr7:150777532-150777780(-)$1	1	5	20	10.8856
.(((......)))((	chr7:150777580-150777868(-)$1	1	108	123	9.5420
.(((......)))..	chr2:242707403-242707653(+)$1	1	90	105	10.2225
((((......)))).	chr12:109124342-109124606(-)$1	1	222	237	12.2986
.(((......)))..	chr2:11727752-11728087(+)$1	1	22	37	10.3384
(.(((......))).	chr14:105259212-105259453(-)$1	1	38	53	8.8908
((((......)))))	chr10:21823265-21823547(+)$1	1	201	216	10.8856
((((......)))))	chr11:71949928-71950195(+)$1	1	135	150	12.0732
((((......)))))	chr11:93474392-93474662(-)$1	1	18	33	9.6920
((((......)))))	chr12:124457853-124458145(+)$1	1	187	202	10.8856
((((......)))).	chr11:2154655-2154858(-)$1	1	9	24	12.3459
((.(......).)))	chr17:43225919-43226157(+)$1	1	189	204	9.7082
((((......)))))	chr7:150038500-150038761(-)$1	1	62	77	11.9873
(.((......)).).	chr16:69419310-69419573(-)$1	1	110	125	8.8334
((((......)))).	chr7:1577275-1577537(+)$1	1	70	85	11.5410
((((......)))))	chr2:139259400-139259732(+)$1	1	249	264	10.8856
((((......)))).	chr20:60709738-60709992(+)$1	1	139	154	12.3459
((((......)))).	chr8:101963111-101963379(-)$1	1	216	231	12.2986
((((......)))).	chr11:120894821-120895085(+)$1	1	64	79	12.3459

#PSSM
d : 0.49	e : 0.23	! : 0.07	" : 0.05	g : 0.05	a : 0.03	c : 0.01	[ : 0.01	: : 0.01	
d : 0.49	e : 0.23	c : 0.14	g : 0.05	[ : 0.03	" : 0.01	! : 0.01	
d : 0.47	e : 0.21	c : 0.18	[ : 0.05	g : 0.03	" : 0.01	b : 0.01	
d : 0.47	e : 0.21	c : 0.18	a : 0.07	g : 0.03	b : 0.01	
o : 0.96	c : 0.03	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.47	e : 0.21	c : 0.14	a : 0.07	g : 0.03	o : 0.03	b : 0.01	
d : 0.47	e : 0.21	c : 0.18	] : 0.05	g : 0.03	3 : 0.01	b : 0.01	
d : 0.49	e : 0.23	c : 0.18	g : 0.05	3 : 0.01	] : 0.01	
d : 0.49	e : 0.25	] : 0.05	g : 0.05	3 : 0.03	c : 0.03	2 : 0.03	4 : 0.01	a : 0.01	
e : 0.29	] : 0.20	: : 0.14	g : 0.07	2 : 0.07	d : 0.05	3 : 0.05	c : 0.03	A : 0.01	4 : 0.01	C : 0.01	5 : 0.01	

#score	608.9352356221334
#seq	55
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_CDS_m3_run1.txt

#BEAR
gggggggnnnnnggggggg	chr2:70315303-70315545(+)$1	242	211	230	10.7013
dd[a[bbnnnnnbba]ddd	chr11:67352063-67352300(+)$1	237	179	198	11.4170
!!ccc[annnnna]ccc22	chr16:88872165-88872377(+)$1	212	148	167	11.2660
###ddddnnnnndddd333	chr16:89627286-89627504(+)$1	218	79	98	11.8540
ee!!cccnnnnnccc22ee	chrX:53436077-53436301(-)$1	224	193	212	11.4680
[ccc[bbnnnnnbb]ccch	chr3:45266771-45267004(-)$1	233	171	190	10.7590
gggggggnnnnnggggggg	chr16:30081071-30081308(+)$1	237	75	94	10.7013
ddddcccnnnnnccc]ddd	chr16:29818701-29818975(+)$1	274	241	260	12.0795
dd[ddddnnnnnddddddd	chr17:80051519-80051747(-)$1	228	81	100	12.0875
ccc[cccnnnnnccc]ccc	chr19:4102308-4102546(-)$1	238	8	27	11.6069
gggg[bbnnnnnbb]gggg	chr19:14580874-14581101(+)$1	227	95	114	10.8748
eeeeeeennnnneeeee44	chr11:67353849-67354093(+)$1	244	135	154	10.7543
f[ccc[annnnnaccc]ff	chr6:31602591-31602840(+)$1	249	16	35	11.0734
ddd[cccnnnnnccc]ddd	chr7:128480889-128481123(+)$1	234	68	87	11.9733
cc[ddddnnnnnddddccc	chr6:30691976-30692207(+)$1	231	122	141	11.7588
eeeee[annnnna]eeeee	chr1:1737813-1738048(-)$1	235	137	156	11.1554
ddddcccnnnnnccc4444	chr22:21350883-21351115(+)$1	232	80	99	12.0157
dddddddnnnnndddd22d	chrX:153593146-153593389(-)$1	243	64	83	11.7363
[a[ddddnnnnndddd]a2	chr1:39822969-39823280(+)$1	311	177	196	11.7716
fff[cccnnnnnccc]fff	chr19:49468962-49469179(+)$1	217	6	25	10.7543
ddda[bbnnnnnbb]a]dd	chr8:145624953-145625193(-)$1	240	171	190	11.2023
gggggggnnnnnggggggg	chr19:39924204-39924411(-)$1	207	26	45	10.7013
eeeecccnnnnnccc]eee	chr6:33240352-33240582(+)$1	230	138	157	11.5722
ii[ddddnnnnndddd>>>	chr19:39923939-39924158(-)$1	219	110	129	11.3699
dd"""bbnnnnnbb333dd	chr12:49426115-49426353(-)$1	238	80	99	11.3463
[bbddddnnnnndddd]bb	chr17:7415444-7415689(+)$1	245	143	162	10.5554
ddddcccnnnnnccc]ddd	chr22:20302133-20302424(-)$1	291	179	198	12.0795
!!eeeeennnnneeeee22	chr17:26900653-26900865(-)$1	212	47	66	10.6847
b!!ddddnnnnndddd]bb	chr12:125396608-125396826(-)$1	218	9	28	11.0682
ddd[cccnnnnnccc]ddd	chr1:149857819-149858103(-)$1	284	226	245	11.9733
[dddd[annnnna]ddddc	chr6:31748579-31748815(-)$1	236	201	220	11.9732
gggggggnnnnnggggggg	chr13:45914747-45914998(-)$1	251	183	202	10.7013
b[eeeeennnnneeeee]b	chr8:146016592-146016805(-)$1	213	88	107	10.1205
ba[ddddnnnnndddd22a	chr12:124821493-124821810(-)$1	317	224	243	11.3080
eeeeebbnnnnnbb]eeee	chr8:144943810-144944077(-)$1	267	135	154	10.9224
ggeeeeennnnneeeee22	chr1:10479694-10479968(+)$1	274	28	47	10.5465
=====[annnnna]=====	chr16:765787-766074(+)$1	287	224	243	11.4205
cc[ddddnnnnndddd333	chr8:144940592-144940880(-)$1	288	6	25	12.1334
cccc[bbnnnnnbb]ccc2	chr7:128481123-128481338(+)$1	215	54	73	10.8145
dddddbbnnnnnbb]dddd	chr12:6647173-6647412(+)$1	239	41	60	11.6309
[dddd[annnnna]dddd]	chr6:31746771-31747032(-)$1	261	39	58	11.9690
[dddd[annnnna]ddddd	chr7:128475480-128475713(+)$1	233	140	159	12.0199
dddd[bbnnnnnbbdddd]	chr11:75282722-75282952(+)$1	230	65	84	11.5651
dddd!!annnnna22dddd	chr1:116931195-116931441(+)$1	246	13	32	11.4636
cc!!cccnnnnnccc]ccc	chr9:130211459-130211661(-)$1	202	94	113	11.8088
eeeeebbnnnnnbb]eeee	chr19:49422370-49422571(+)$1	201	36	55	10.9224
eeeeebbnnnnnbb]eeee	chrX:153582184-153582412(-)$1	228	164	183	10.9224
$$$ddddnnnnndddd444	chr10:71124472-71124687(+)$1	215	134	153	11.1575
ddd[cccnnnnnccc]ddd	chr22:23523215-23523539(+)$1	324	9	28	11.9733
ddddcccnnnnnccc]ddd	chr3:183508492-183508784(+)$1	292	143	162	12.0795
c[eeeeennnnneeeee]c	chr12:10875353-10875588(-)$1	235	122	141	10.6835
dd[ddddnnnnndddd>>>	chr6:31604224-31604484(+)$1	260	76	95	11.5197
"""ddddnnnnnddddddd	chr3:53261972-53262248(-)$1	276	48	67	11.7850
ccc[cccnnnnnccc333c	chr10:81928624-81928855(-)$1	231	57	76	11.8171
ee[ddddnnnnndddd]ee	chrX:153583093-153583301(-)$1	208	61	80	11.8031
FF:ddddnnnnnddddeee	chr6:27861440-27861662(+)$1	222	26	45	9.6743
ggg"""annnnna333ggg	chr19:39214855-39215079(+)$1	224	172	191	11.1421
ddd!!bbnnnnnbb22ddd	chr3:10346696-10346941(-)$1	245	139	158	11.0845
dd:ddddnnnnnddddddd	chr1:186308747-186308998(-)$1	251	161	180	10.9783

#otherMatches

#Seq PSSM
CUGGAGGGACCACCUCUAG	chr2:70315303-70315545(+)$1	242	211	230	10.7013
GGUGAGUCUUGAACCUCCA	chr11:67352063-67352300(+)$1	237	179	198	11.4170
GUGAGCCGCACAGUUUCCA	chr16:88872165-88872377(+)$1	212	148	167	11.2660
CCAUGGCGCCCAGCCGGAA	chr16:89627286-89627504(+)$1	218	79	98	11.8540
UGAACCAGGUGAUGGAGCA	chrX:53436077-53436301(-)$1	224	193	212	11.4680
GACCCUGGUCAUCGUGGUG	chr3:45266771-45267004(-)$1	233	171	190	10.7590
ACAGGGAUCACCUUCCUGU	chr16:30081071-30081308(+)$1	237	75	94	10.7013
UGCCUGCGAGAUGUGUGGC	chr16:29818701-29818975(+)$1	274	241	260	12.0795
UGACCACUGUUUGUGGCAG	chr17:80051519-80051747(-)$1	228	81	100	12.0875
CACCCCCUCGCCGGGAGUG	chr19:4102308-4102546(-)$1	238	8	27	11.6069
CCCAGGGAUGGGCUAUGGG	chr19:14580874-14581101(+)$1	227	95	114	10.8748
CAAGGCCUUCCUGGCCUCC	chr11:67353849-67354093(+)$1	244	135	154	10.7543
CCUGAUGGAGGACUCAAGG	chr6:31602591-31602840(+)$1	249	16	35	11.0734
ACUGGCCAGGUGGGCAAGU	chr7:128480889-128481123(+)$1	234	68	87	11.9733
UGAGUAUCAGCAGUACCAG	chr6:30691976-30692207(+)$1	231	122	141	11.7588
AGGGACUGGAGGAUUCCCU	chr1:1737813-1738048(-)$1	235	137	156	11.1554
AGCUCCUUAACCAGGCCCC	chr22:21350883-21351115(+)$1	232	80	99	12.0157
UCCCUUCGAAGUGAAGGUG	chrX:153593146-153593389(-)$1	243	64	83	11.7363
AGGAGCAACAGAUGCUGCA	chr1:39822969-39823280(+)$1	311	177	196	11.7716
CGGAGUCCCCUUGGCCUCG	chr19:49468962-49469179(+)$1	217	6	25	10.7543
CUGCAGGAGCCCCCGGCCA	chr8:145624953-145625193(-)$1	240	171	190	11.2023
UGCUUCUCGGCAAGGAGCG	chr19:39924204-39924411(-)$1	207	26	45	10.7013
CACUGCCAUUAAGGUAAGU	chr6:33240352-33240582(+)$1	230	138	157	11.5722
GGCUUCCAAGAAGGAGAUC	chr19:39923939-39924158(-)$1	219	110	129	11.3699
ACUCACAACUCCUGCUUGU	chr12:49426115-49426353(-)$1	238	80	99	11.3463
CUCCUGCUUGAUGCAGAGA	chr17:7415444-7415689(+)$1	245	143	162	10.5554
UCGCCUGCUGCCCAGUGUG	chr22:20302133-20302424(-)$1	291	179	198	12.0795
AAUGCCUGGCGAGGGCAAC	chr17:26900653-26900865(-)$1	212	47	66	10.6847
UUUGCUGGGAAACAGCUGG	chr12:125396608-125396826(-)$1	218	9	28	11.0682
GCGAGCUGGCCAAGCACGC	chr1:149857819-149858103(-)$1	284	226	245	11.9733
ACAGCGUGGAUGGGGCUGG	chr6:31748579-31748815(-)$1	236	201	220	11.9732
CCGGGCCGAGCGGGCUCGG	chr13:45914747-45914998(-)$1	251	183	202	10.7013
GAAGCUGCCCUCCGGCUCC	chr8:146016592-146016805(-)$1	213	88	107	10.1205
CCCGGCCAGAGCGGCCCCG	chr12:124821493-124821810(-)$1	317	224	243	11.3080
CCUGCUGGAGGACGUGCAG	chr8:144943810-144944077(-)$1	267	135	154	10.9224
CUCUUGGCCAAACCAGGGC	chr1:10479694-10479968(+)$1	274	28	47	10.5465
UGGGAGUCCCGAAGUCUUA	chr16:765787-766074(+)$1	287	224	243	11.4205
CUUCUGAACUCCUCAGCUC	chr8:144940592-144940880(-)$1	288	6	25	12.1334
GUCUUGCCUGAUGCUGGAU	chr7:128481123-128481338(+)$1	215	54	73	10.8145
CUCUGGUGGCUGGCUCAGA	chr12:6647173-6647412(+)$1	239	41	60	11.6309
CGCAGGUGUGGUGGCUGUU	chr6:31746771-31747032(-)$1	261	39	58	11.9690
CGCCCCCGGUGAGUGGGCC	chr7:128475480-128475713(+)$1	233	140	159	12.0199
GCCAUGGCCUCACCUGGCA	chr11:75282722-75282952(+)$1	230	65	84	11.5651
UACCUUCUCUUUGUUGGUA	chr1:116931195-116931441(+)$1	246	13	32	11.4636
GAAAAACAGUAAGUUGUCU	chr9:130211459-130211661(-)$1	202	94	113	11.8088
GACGGGCCCCCAGCUCUGU	chr19:49422370-49422571(+)$1	201	36	55	10.9224
CCCGGGAUGCCCUCACCGG	chrX:153582184-153582412(-)$1	228	164	183	10.9224
ACCUGUGGGAUUCACGUUU	chr10:71124472-71124687(+)$1	215	134	153	11.1575
CUCAGUGGGCGACAUCGAG	chr22:23523215-23523539(+)$1	324	9	28	11.9733
ACUUCUGGGCAGCAGCAAG	chr3:183508492-183508784(+)$1	292	143	162	12.0795
CGGAGAAAAAAGUUCUCGG	chr12:10875353-10875588(-)$1	235	122	141	10.6835
GCCAUCCCCUUCGGAUUUU	chr6:31604224-31604484(+)$1	260	76	95	11.5197
CCCUGAGCCUUACUCACCC	chr3:53261972-53262248(-)$1	276	48	67	11.7850
AGCAGCAGCCAGUGCCGAG	chr10:81928624-81928855(-)$1	231	57	76	11.8171
GUGCGCUUUGGUGGCGAGC	chrX:153583093-153583301(-)$1	208	61	80	11.8031
GCGAGGCUUCCCGCCUGGC	chr6:27861440-27861662(+)$1	222	26	45	9.6743
GGCCACCUCCCUGACCGCU	chr19:39214855-39215079(+)$1	224	172	191	11.1421
UAGAAGCGCACAGUGACUG	chr3:10346696-10346941(-)$1	245	139	158	11.0845
UUCAUACUAAGCGUAUUCA	chr1:186308747-186308998(-)$1	251	161	180	10.9783

#DB
(((((((.....)))))))	chr2:70315303-70315545(+)$1	1	211	230	10.7013
((.(.((.....))).)))	chr11:67352063-67352300(+)$1	1	179	198	11.4170
..(((.(.....).)))..	chr16:88872165-88872377(+)$1	1	148	167	11.2660
...((((.....))))...	chr16:89627286-89627504(+)$1	1	79	98	11.8540
((..(((.....)))..))	chrX:53436077-53436301(-)$1	1	193	212	11.4680
.(((.((.....)).))))	chr3:45266771-45267004(-)$1	1	171	190	10.7590
(((((((.....)))))))	chr16:30081071-30081308(+)$1	1	75	94	10.7013
(((((((.....))).)))	chr16:29818701-29818975(+)$1	1	241	260	12.0795
((.((((.....)))))))	chr17:80051519-80051747(-)$1	1	81	100	12.0875
(((.(((.....))).)))	chr19:4102308-4102546(-)$1	1	8	27	11.6069
((((.((.....)).))))	chr19:14580874-14581101(+)$1	1	95	114	10.8748
(((((((.....)))))..	chr11:67353849-67354093(+)$1	1	135	154	10.7543
(.(((.(.....)))).))	chr6:31602591-31602840(+)$1	1	16	35	11.0734
(((.(((.....))).)))	chr7:128480889-128481123(+)$1	1	68	87	11.9733
((.((((.....)))))))	chr6:30691976-30692207(+)$1	1	122	141	11.7588
(((((.(.....).)))))	chr1:1737813-1738048(-)$1	1	137	156	11.1554
(((((((.....)))....	chr22:21350883-21351115(+)$1	1	80	99	12.0157
(((((((.....))))..)	chrX:153593146-153593389(-)$1	1	64	83	11.7363
.(.((((.....)))).).	chr1:39822969-39823280(+)$1	1	177	196	11.7716
(((.(((.....))).)))	chr19:49468962-49469179(+)$1	1	6	25	10.7543
((((.((.....)).).))	chr8:145624953-145625193(-)$1	1	171	190	11.2023
(((((((.....)))))))	chr19:39924204-39924411(-)$1	1	26	45	10.7013
(((((((.....))).)))	chr6:33240352-33240582(+)$1	1	138	157	11.5722
((.((((.....))))...	chr19:39923939-39924158(-)$1	1	110	129	11.3699
((...((.....))...))	chr12:49426115-49426353(-)$1	1	80	99	11.3463
.((((((.....)))).))	chr17:7415444-7415689(+)$1	1	143	162	10.5554
(((((((.....))).)))	chr22:20302133-20302424(-)$1	1	179	198	12.0795
..(((((.....)))))..	chr17:26900653-26900865(-)$1	1	47	66	10.6847
(..((((.....)))).))	chr12:125396608-125396826(-)$1	1	9	28	11.0682
(((.(((.....))).)))	chr1:149857819-149858103(-)$1	1	226	245	11.9733
.((((.(.....).)))))	chr6:31748579-31748815(-)$1	1	201	220	11.9732
(((((((.....)))))))	chr13:45914747-45914998(-)$1	1	183	202	10.7013
(.(((((.....))))).)	chr8:146016592-146016805(-)$1	1	88	107	10.1205
((.((((.....))))..)	chr12:124821493-124821810(-)$1	1	224	243	11.3080
(((((((.....)).))))	chr8:144943810-144944077(-)$1	1	135	154	10.9224
(((((((.....)))))..	chr1:10479694-10479968(+)$1	1	28	47	10.5465
(((((.(.....).)))))	chr16:765787-766074(+)$1	1	224	243	11.4205
((.((((.....))))...	chr8:144940592-144940880(-)$1	1	6	25	12.1334
((((.((.....)).))).	chr7:128481123-128481338(+)$1	1	54	73	10.8145
(((((((.....)).))))	chr12:6647173-6647412(+)$1	1	41	60	11.6309
.((((.(.....).)))).	chr6:31746771-31747032(-)$1	1	39	58	11.9690
.((((.(.....).)))))	chr7:128475480-128475713(+)$1	1	140	159	12.0199
((((.((.....)))))).	chr11:75282722-75282952(+)$1	1	65	84	11.5651
((((..(.....)..))))	chr1:116931195-116931441(+)$1	1	13	32	11.4636
((..(((.....))).)))	chr9:130211459-130211661(-)$1	1	94	113	11.8088
(((((((.....)).))))	chr19:49422370-49422571(+)$1	1	36	55	10.9224
(((((((.....)).))))	chrX:153582184-153582412(-)$1	1	164	183	10.9224
...((((.....))))...	chr10:71124472-71124687(+)$1	1	134	153	11.1575
(((.(((.....))).)))	chr22:23523215-23523539(+)$1	1	9	28	11.9733
(((((((.....))).)))	chr3:183508492-183508784(+)$1	1	143	162	12.0795
(.(((((.....))))).)	chr12:10875353-10875588(-)$1	1	122	141	10.6835
((.((((.....))))...	chr6:31604224-31604484(+)$1	1	76	95	11.5197
...((((.....)))))))	chr3:53261972-53262248(-)$1	1	48	67	11.7850
(((.(((.....)))...)	chr10:81928624-81928855(-)$1	1	57	76	11.8171
((.((((.....)))).))	chrX:153583093-153583301(-)$1	1	61	80	11.8031
((.((((.....))))(((	chr6:27861440-27861662(+)$1	1	26	45	9.6743
(((...(.....)...)))	chr19:39214855-39215079(+)$1	1	172	191	11.1421
(((..((.....))..)))	chr3:10346696-10346941(-)$1	1	139	158	11.0845
)).((((.....))))(((	chr1:186308747-186308998(-)$1	1	161	180	10.9783

#PSSM
d : 0.30	e : 0.13	g : 0.11	c : 0.11	[ : 0.10	b : 0.05	! : 0.03	f : 0.03	# : 0.01	i : 0.01	= : 0.01	$ : 0.01	" : 0.01	F : 0.01	
d : 0.35	e : 0.13	g : 0.11	c : 0.11	! : 0.05	[ : 0.05	a : 0.03	# : 0.01	f : 0.01	i : 0.01	b : 0.01	= : 0.01	$ : 0.01	" : 0.01	F : 0.01	
d : 0.27	e : 0.16	[ : 0.15	g : 0.10	c : 0.10	! : 0.05	" : 0.03	: : 0.03	# : 0.01	f : 0.01	b : 0.01	= : 0.01	$ : 0.01	
d : 0.44	e : 0.16	[ : 0.10	g : 0.08	c : 0.06	! : 0.05	a : 0.03	" : 0.03	= : 0.01	
d : 0.33	c : 0.25	e : 0.15	[ : 0.10	g : 0.06	" : 0.03	! : 0.03	= : 0.01	
d : 0.27	c : 0.22	b : 0.20	[ : 0.11	e : 0.08	g : 0.06	! : 0.01	" : 0.01	
d : 0.27	c : 0.22	b : 0.20	a : 0.15	e : 0.08	g : 0.06	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
d : 0.27	c : 0.22	b : 0.20	a : 0.15	e : 0.08	g : 0.06	
d : 0.27	c : 0.23	b : 0.20	] : 0.10	e : 0.08	g : 0.06	2 : 0.01	3 : 0.01	
d : 0.33	c : 0.25	] : 0.13	e : 0.10	g : 0.06	3 : 0.03	2 : 0.03	a : 0.01	= : 0.01	
d : 0.37	] : 0.18	e : 0.15	g : 0.08	c : 0.06	3 : 0.05	2 : 0.03	4 : 0.01	a : 0.01	= : 0.01	
d : 0.28	e : 0.18	g : 0.10	c : 0.10	] : 0.10	3 : 0.06	2 : 0.05	4 : 0.03	> : 0.03	f : 0.01	= : 0.01	
d : 0.32	e : 0.13	g : 0.10	2 : 0.08	c : 0.08	3 : 0.05	4 : 0.05	f : 0.03	> : 0.03	b : 0.03	] : 0.03	a : 0.01	= : 0.01	
d : 0.28	e : 0.13	g : 0.10	c : 0.10	2 : 0.08	4 : 0.05	b : 0.05	3 : 0.03	f : 0.03	> : 0.03	] : 0.03	h : 0.01	a : 0.01	= : 0.01	

#score	668.3050774761435
#seq	59
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_CDS_m3_run2.txt

#BEAR
eewwwwwwwwwwwwwwee	chr19:49377358-49377588(+)$1	230	90	108	19.5840
ddddtttttttttttddd	chr17:77808956-77809226(-)$1	270	48	66	22.1610
!cccwwwwwwwwwwwwww	chr5:145878082-145878348(+)$1	266	71	89	19.7810
hhhhyyyyyyyyyyyyyy	chr1:155734766-155735111(-)$1	345	19	37	19.1897
dccctttttttttttccc	chr17:2570185-2570474(+)$1	289	202	220	22.6933
ddddtttttttttttddd	chr9:100692321-100692595(-)$1	274	74	92	22.1610
hhhhuuuuuuuuuuuuhh	chr10:12076982-12077240(-)$1	258	171	189	20.8909
:ccctttttttttttccc	chr11:65825703-65825972(+)$1	269	154	172	21.6686
!cccwwwwwwwwwwwwww	chr9:131456195-131456412(+)$1	217	119	137	19.7810
dddduuuuuuuuuuuudd	chr18:55282948-55283150(-)$1	202	22	40	21.8716
ddbbtttttttttttbb]	chr11:129992098-129992363(+)$1	265	191	209	21.1770
cccvvvvvvvvvvvvvcc	chr14:102551164-102551383(-)$1	219	60	78	21.5398
ggggtttttttttttggg	chr11:62286562-62286801(-)$1	239	33	51	21.9151
dddduuuuuuuuuuuudd	chr19:49416237-49416533(+)$1	296	194	212	21.8716
ffffuuuuuuuuuuuuff	chr17:38555191-38555448(-)$1	257	147	165	21.1546
!ccctttttttttttccc	chr9:100774630-100774837(+)$1	207	72	90	22.7199
bb[attttttttttta]b	chr12:122999550-122999830(-)$1	280	50	68	21.5288
d!!avvvvvvvvvvvvva	chr1:70716292-70716572(+)$1	280	168	186	21.2945
e!!attttttttttta22	chr19:39943946-39944233(+)$1	287	78	96	21.9676
fffftttttttttttfff	chr1:70705092-70705304(+)$1	212	187	205	21.4213
ddddtttttttttttddd	chr5:32395165-32395449(-)$1	284	97	115	22.1610
eeeettttttttttteee	chrX:13785163-13785505(+)$1	342	281	299	22.1256
:ccctttttttttttccc	chr6:168363016-168363341(+)$1	325	146	164	21.6686
ee[attttttttttta]e	chr7:158695013-158695272(+)$1	259	186	204	22.5074
[cccvvvvvvvvvvvvvc	chr6:31857143-31857387(-)$1	244	132	150	21.5044
!ccctttttttttttccc	chr15:66791636-66791857(-)$1	221	34	52	22.7199
dddduuuuuuuuuuuudd	chr2:170668077-170668342(+)$1	265	201	219	21.8716
ddddtttttttttttddd	chr20:30382200-30382446(+)$1	246	50	68	22.1610
dddduuuuuuuuuuuudd	chr1:186305581-186305849(-)$1	268	191	209	21.8716
ddddtttttttttttddd	chr14:73572646-73572881(+)$1	235	101	119	22.1610
:ccctttttttttttccc	chr10:103558854-103559142(-)$1	288	39	57	21.6686
ee[awwwwwwwwwwwwww	chr1:245026968-245027305(-)$1	337	130	148	19.6891
eeeettttttttttteee	chr14:23528426-23528711(-)$1	285	31	49	22.1256
[ccctttttttttttccc	chr1:25812077-25812388(+)$1	311	156	174	22.6976
gwwwwwwwwwwwwwwggg	chr11:62293868-62294110(-)$1	242	54	72	18.4804
cccwwwwwwwwwwwwwwc	chr2:170493515-170493783(+)$1	268	159	177	19.9832
eeeuuuuuuuuuuuueee	chr1:46073182-46073427(+)$1	245	28	46	21.3192
eeeettttttttttteee	chr10:129907068-129907357(-)$1	289	243	261	22.1256
eewwwwwwwwwwwwwwee	chr3:37370354-37370594(+)$1	240	157	175	19.5840
eeeettttttttttteee	chr16:89351752-89352003(-)$1	251	174	192	22.1256
eeeettttttttttteee	chr3:37366189-37366442(+)$1	253	137	155	22.1256
hhhhttttttttttthhh	chr11:110106723-110107018(-)$1	295	60	78	20.9736
!cccuuuuuuuuuuuucc	chr1:245021211-245021481(-)$1	270	34	52	22.2939
h[bbuuuuuuuuuuuubb	chr20:34319756-34319992(-)$1	236	184	202	20.6444
"ccctttttttttttccc	chr2:145147050-145147368(-)$1	318	292	310	22.5661
eeeuuuuuuuuuuuueee	chr6:135786939-135787322(-)$1	383	204	222	21.3192
cccuuuuuuuuuuuuccc	chr9:116171024-116171335(-)$1	311	200	218	21.7018
cc[avvvvvvvvvvvvva	chr11:77387735-77387993(-)$1	258	113	131	21.3444
cccuuuuuuuuuuuuccc	chr19:5604501-5604739(-)$1	238	83	101	21.7018
fffftttttttttttfff	chr6:4032644-4032927(+)$1	283	125	143	21.4213
ddddvvvvvvvvvvvvvd	chr1:71537716-71537967(-)$1	251	70	88	21.1952
ggggtttttttttttggg	chr19:3576158-3576392(+)$1	234	162	180	21.9151
c!!auuuuuuuuuuuua2	chr6:44360297-44360624(+)$1	327	124	142	21.7121
ggggtttttttttttggg	chr6:26056056-26056293(-)$1	237	128	146	21.9151
ddddtttttttttttddd	chr7:156743028-156743273(+)$1	245	219	237	22.1610
[ccctttttttttttccc	chr6:52132560-52132810(-)$1	250	164	182	22.6976
e[aauuuuuuuuuuuua]	chr1:35653532-35653793(-)$1	261	100	118	21.9174
[cccuuuuuuuuuuuucc	chr7:127975840-127976086(-)$1	246	183	201	22.2717
ddddtttttttttttddd	chr7:102047780-102048016(+)$1	236	105	123	22.1610
dddduuuuuuuuuuuudd	chr1:52305950-52306216(-)$1	266	74	92	21.8716
cccvvvvvvvvvvvvvcc	chr1:224492625-224492940(-)$1	315	122	140	21.5398
eeeuuuuuuuuuuuueee	chr11:77382981-77383376(-)$1	395	320	338	21.3192
eeeettttttttttteee	chr1:150192898-150193160(-)$1	262	35	53	22.1256
ddddvvvvvvvvvvvvvd	chr7:102982110-102982398(-)$1	288	236	254	21.1952
eeeettttttttttteee	chr10:129906815-129907133(-)$1	318	19	37	22.1256
fffftttttttttttfff	chrX:53440150-53440425(-)$1	275	160	178	21.4213
eeyyyyyyyyyyyyyyyy	chr3:37368210-37368433(+)$1	223	78	96	19.2735
fffftttttttttttfff	chr4:190862086-190862326(+)$1	240	192	210	21.4213

#otherMatches

#Seq PSSM
CUGAGAAGGAUGGAGAAG	chr19:49377358-49377588(+)$1	230	90	108	19.5840
GUCGUUCCAAUGUCCUGA	chr17:77808956-77809226(-)$1	270	48	66	22.1610
AUUGAAAAGAUGAAAGAC	chr5:145878082-145878348(+)$1	266	71	89	19.7810
CAUCUUCUCAAGAGCCCC	chr1:155734766-155735111(-)$1	345	19	37	19.1897
CCAGAAAAAUAUGCAUUG	chr17:2570185-2570474(+)$1	289	202	220	22.6933
CAAGAAACAUCCCAGCUU	chr9:100692321-100692595(-)$1	274	74	92	22.1610
UGCUCAGAUGAAGUAAGG	chr10:12076982-12077240(-)$1	258	171	189	20.8909
GUCCGUAUCUAAAAAGGA	chr11:65825703-65825972(+)$1	269	154	172	21.6686
aggagagguaaaagaaAA	chr9:131456195-131456412(+)$1	217	119	137	19.7810
UUUCUAAAUCACAGUUGA	chr18:55282948-55283150(-)$1	202	22	40	21.8716
ggaggaCCGAGAUUACUA	chr11:129992098-129992363(+)$1	265	191	209	21.1770
CGUGAUAAAGAAGUAAGC	chr14:102551164-102551383(-)$1	219	60	78	21.5398
GGAUUUGACCUGAAUGUU	chr11:62286562-62286801(-)$1	239	33	51	21.9151
GCACCCUAAAGUCAACGU	chr19:49416237-49416533(+)$1	296	194	212	21.8716
CCAGCAAAAGGUAAUCUU	chr17:38555191-38555448(-)$1	257	147	165	21.1546
GAAGAAGAAUUUGGACUU	chr9:100774630-100774837(+)$1	207	72	90	22.7199
CUACAGAGAUAGAAAGAA	chr12:122999550-122999830(-)$1	280	50	68	21.5288
UGAAGAAGACAUGGAUAU	chr1:70716292-70716572(+)$1	280	168	186	21.2945
CAGUGAGAAAGAAGAAGA	chr19:39943946-39944233(+)$1	287	78	96	21.9676
AAUCUGUUAUCCUCUGGU	chr1:70705092-70705304(+)$1	212	187	205	21.4213
UUCAAGAAGAGAAAAUGA	chr5:32395165-32395449(-)$1	284	97	115	22.1610
GUACACCUUUCGUAAGUA	chrX:13785163-13785505(+)$1	342	281	299	22.1256
GCGGGAAGCGGAAGACCG	chr6:168363016-168363341(+)$1	325	146	164	21.6686
AUGCAGAAAAUGAAAGGA	chr7:158695013-158695272(+)$1	259	186	204	22.5074
AGUCAGAUAGGGUAAGAG	chr6:31857143-31857387(-)$1	244	132	150	21.5044
AGCUACCAAGAAACCAGC	chr15:66791636-66791857(-)$1	221	34	52	22.7199
AUUUUUUAUUCAUUUUAA	chr2:170668077-170668342(+)$1	265	201	219	21.8716
ACCUGCCAGAGAAGAAGG	chr20:30382200-30382446(+)$1	246	50	68	22.1610
GCAGCAAAGUCAAAAAUU	chr1:186305581-186305849(-)$1	268	191	209	21.8716
CUUGAAAGAAAACUCCGA	chr14:73572646-73572881(+)$1	235	101	119	22.1610
GCCCAUUAUGAGCCAGGG	chr10:103558854-103559142(-)$1	288	39	57	21.6686
CGGGGACGAAGAGGAAGG	chr1:245026968-245027305(-)$1	337	130	148	19.6891
GUUCAGAAAGAGGCAGAG	chr14:23528426-23528711(-)$1	285	31	49	22.1256
AAGUUAGAAGAAGCCACU	chr1:25812077-25812388(+)$1	311	156	174	22.6976
CGAAGUUGACAUCAAGGG	chr11:62293868-62294110(-)$1	242	54	72	18.4804
GUCAAAGCAGAAACAAAG	chr2:170493515-170493783(+)$1	268	159	177	19.9832
UCUGAAGAGGCAAAAGGA	chr1:46073182-46073427(+)$1	245	28	46	21.3192
GUGAGAAAGGCAAAAUCA	chr10:129907068-129907357(-)$1	289	243	261	22.1256
GUUACUUAAAAAAAUUGC	chr3:37370354-37370594(+)$1	240	157	175	19.5840
AAACGAAAUCCAAUAGUU	chr16:89351752-89352003(-)$1	251	174	192	22.1256
GAGCUUGAAAAUACUGCU	chr3:37366189-37366442(+)$1	253	137	155	22.1256
AAAUAUGUUAUUUUAAUU	chr11:110106723-110107018(-)$1	295	60	78	20.9736
GCAGUUGAAUUUAAUUUU	chr1:245021211-245021481(-)$1	270	34	52	22.2939
UGGCAGUUUAACUUGAGU	chr20:34319756-34319992(-)$1	236	184	202	20.6444
AUGGGAAAAUGGAAACCA	chr2:145147050-145147368(-)$1	318	292	310	22.5661
CAUGUAACUGAAGAAAUG	chr6:135786939-135787322(-)$1	383	204	222	21.3192
cuggaagaagaagaacag	chr9:116171024-116171335(-)$1	311	200	218	21.7018
CUGGAUGAAGAAGAGAGC	chr11:77387735-77387993(-)$1	258	113	131	21.3444
AGUGAAGAAGGAAAAAUU	chr19:5604501-5604739(-)$1	238	83	101	21.7018
GGUCACCCAGCAGAAGAC	chr6:4032644-4032927(+)$1	283	125	143	21.4213
UCCUGCAUCUAUAUUaaa	chr1:71537716-71537967(-)$1	251	70	88	21.1952
CCUCUCAAAGCACCUGGG	chr19:3576158-3576392(+)$1	234	162	180	21.9151
AAGCAUUAAGAAGACAGA	chr6:44360297-44360624(+)$1	327	124	142	21.7121
CACUGUAACCAAGAAAGU	chr6:26056056-26056293(-)$1	237	128	146	21.9151
gcgcaggaagcagaagcg	chr7:156743028-156743273(+)$1	245	219	237	22.1610
AAAUGAGAUUAAAAAGUU	chr6:52132560-52132810(-)$1	250	164	182	22.6976
AGGCAAGAGGAGGAACGA	chr1:35653532-35653793(-)$1	261	100	118	21.9174
GAGGUAAGCAGCUCAUCC	chr7:127975840-127976086(-)$1	246	183	201	22.2717
AGUUAAAAGAGAAGAAAU	chr7:102047780-102048016(+)$1	236	105	123	22.1610
ACCUAAGUAAUAUGGAAG	chr1:52305950-52306216(-)$1	266	74	92	21.8716
GCUAAAGAAUAAAGGAAG	chr1:224492625-224492940(-)$1	315	122	140	21.5398
UUGGACAGGGCAAAAUAG	chr11:77382981-77383376(-)$1	395	320	338	21.3192
AAUGUAACCAAUCCUCAU	chr1:150192898-150193160(-)$1	262	35	53	22.1256
AGACAAUUUUCUUAUGAG	chr7:102982110-102982398(-)$1	288	236	254	21.1952
GUGAGAAAGGCAAAAUCA	chr10:129906815-129907133(-)$1	318	19	37	22.1256
GCUGAAGAGGACACACAG	chrX:53440150-53440425(-)$1	275	160	178	21.4213
GCAGAGUUGAAGAGAAAA	chr3:37368210-37368433(+)$1	223	78	96	19.2735
CACCCCCGCAACUCCGGU	chr4:190862086-190862326(+)$1	240	192	210	21.4213

#DB
((..............))	chr19:49377358-49377588(+)$1	1	90	108	19.5840
((((...........)))	chr17:77808956-77809226(-)$1	1	48	66	22.1610
.(((..............	chr5:145878082-145878348(+)$1	1	71	89	19.7810
((((..............	chr1:155734766-155735111(-)$1	1	19	37	19.1897
((((...........)))	chr17:2570185-2570474(+)$1	1	202	220	22.6933
((((...........)))	chr9:100692321-100692595(-)$1	1	74	92	22.1610
((((............))	chr10:12076982-12077240(-)$1	1	171	189	20.8909
.(((...........)))	chr11:65825703-65825972(+)$1	1	154	172	21.6686
.(((..............	chr9:131456195-131456412(+)$1	1	119	137	19.7810
((((............))	chr18:55282948-55283150(-)$1	1	22	40	21.8716
((((...........)).	chr11:129992098-129992363(+)$1	1	191	209	21.1770
(((.............))	chr14:102551164-102551383(-)$1	1	60	78	21.5398
((((...........)))	chr11:62286562-62286801(-)$1	1	33	51	21.9151
((((............))	chr19:49416237-49416533(+)$1	1	194	212	21.8716
((((............))	chr17:38555191-38555448(-)$1	1	147	165	21.1546
.(((...........)))	chr9:100774630-100774837(+)$1	1	72	90	22.7199
((.(...........).)	chr12:122999550-122999830(-)$1	1	50	68	21.5288
(..(.............)	chr1:70716292-70716572(+)$1	1	168	186	21.2945
(..(...........)..	chr19:39943946-39944233(+)$1	1	78	96	21.9676
((((...........)))	chr1:70705092-70705304(+)$1	1	187	205	21.4213
((((...........)))	chr5:32395165-32395449(-)$1	1	97	115	22.1610
((((...........)))	chrX:13785163-13785505(+)$1	1	281	299	22.1256
.(((...........)))	chr6:168363016-168363341(+)$1	1	146	164	21.6686
((.(...........).)	chr7:158695013-158695272(+)$1	1	186	204	22.5074
.(((.............)	chr6:31857143-31857387(-)$1	1	132	150	21.5044
.(((...........)))	chr15:66791636-66791857(-)$1	1	34	52	22.7199
((((............))	chr2:170668077-170668342(+)$1	1	201	219	21.8716
((((...........)))	chr20:30382200-30382446(+)$1	1	50	68	22.1610
((((............))	chr1:186305581-186305849(-)$1	1	191	209	21.8716
((((...........)))	chr14:73572646-73572881(+)$1	1	101	119	22.1610
.(((...........)))	chr10:103558854-103559142(-)$1	1	39	57	21.6686
((.(..............	chr1:245026968-245027305(-)$1	1	130	148	19.6891
((((...........)))	chr14:23528426-23528711(-)$1	1	31	49	22.1256
.(((...........)))	chr1:25812077-25812388(+)$1	1	156	174	22.6976
(..............)))	chr11:62293868-62294110(-)$1	1	54	72	18.4804
(((..............)	chr2:170493515-170493783(+)$1	1	159	177	19.9832
(((............)))	chr1:46073182-46073427(+)$1	1	28	46	21.3192
((((...........)))	chr10:129907068-129907357(-)$1	1	243	261	22.1256
((..............))	chr3:37370354-37370594(+)$1	1	157	175	19.5840
((((...........)))	chr16:89351752-89352003(-)$1	1	174	192	22.1256
((((...........)))	chr3:37366189-37366442(+)$1	1	137	155	22.1256
((((...........)))	chr11:110106723-110107018(-)$1	1	60	78	20.9736
.(((............))	chr1:245021211-245021481(-)$1	1	34	52	22.2939
(.((............))	chr20:34319756-34319992(-)$1	1	184	202	20.6444
.(((...........)))	chr2:145147050-145147368(-)$1	1	292	310	22.5661
(((............)))	chr6:135786939-135787322(-)$1	1	204	222	21.3192
(((............)))	chr9:116171024-116171335(-)$1	1	200	218	21.7018
((.(.............)	chr11:77387735-77387993(-)$1	1	113	131	21.3444
(((............)))	chr19:5604501-5604739(-)$1	1	83	101	21.7018
((((...........)))	chr6:4032644-4032927(+)$1	1	125	143	21.4213
((((.............)	chr1:71537716-71537967(-)$1	1	70	88	21.1952
((((...........)))	chr19:3576158-3576392(+)$1	1	162	180	21.9151
(..(............).	chr6:44360297-44360624(+)$1	1	124	142	21.7121
((((...........)))	chr6:26056056-26056293(-)$1	1	128	146	21.9151
((((...........)))	chr7:156743028-156743273(+)$1	1	219	237	22.1610
.(((...........)))	chr6:52132560-52132810(-)$1	1	164	182	22.6976
(.((............).	chr1:35653532-35653793(-)$1	1	100	118	21.9174
.(((............))	chr7:127975840-127976086(-)$1	1	183	201	22.2717
((((...........)))	chr7:102047780-102048016(+)$1	1	105	123	22.1610
((((............))	chr1:52305950-52306216(-)$1	1	74	92	21.8716
(((.............))	chr1:224492625-224492940(-)$1	1	122	140	21.5398
(((............)))	chr11:77382981-77383376(-)$1	1	320	338	21.3192
((((...........)))	chr1:150192898-150193160(-)$1	1	35	53	22.1256
((((.............)	chr7:102982110-102982398(-)$1	1	236	254	21.1952
((((...........)))	chr10:129906815-129907133(-)$1	1	19	37	22.1256
((((...........)))	chrX:53440150-53440425(-)$1	1	160	178	21.4213
((................	chr3:37368210-37368433(+)$1	1	78	96	19.2735
((((...........)))	chr4:190862086-190862326(+)$1	1	192	210	21.4213

#PSSM
e : 0.25	d : 0.25	c : 0.10	! : 0.07	f : 0.07	h : 0.05	g : 0.05	[ : 0.05	: : 0.04	b : 0.01	" : 0.01	
c : 0.29	e : 0.22	d : 0.22	f : 0.07	h : 0.04	g : 0.04	! : 0.04	[ : 0.02	b : 0.01	w : 0.01	
c : 0.27	d : 0.20	e : 0.14	f : 0.07	[ : 0.05	w : 0.04	h : 0.04	g : 0.04	! : 0.04	b : 0.02	a : 0.01	y : 0.01	
d : 0.20	c : 0.20	a : 0.11	e : 0.10	f : 0.07	u : 0.07	w : 0.05	h : 0.04	g : 0.04	b : 0.02	v : 0.02	y : 0.01	
t : 0.51	u : 0.25	w : 0.10	v : 0.10	y : 0.02	
t : 0.51	u : 0.25	w : 0.10	v : 0.10	y : 0.02	
t : 0.51	u : 0.25	w : 0.10	v : 0.10	y : 0.02	
t : 0.51	u : 0.25	w : 0.10	v : 0.10	y : 0.02	
t : 0.51	u : 0.25	w : 0.10	v : 0.10	y : 0.02	
t : 0.51	u : 0.25	w : 0.10	v : 0.10	y : 0.02	
t : 0.51	u : 0.25	w : 0.10	v : 0.10	y : 0.02	
t : 0.51	u : 0.25	w : 0.10	v : 0.10	y : 0.02	
t : 0.51	u : 0.25	w : 0.10	v : 0.10	y : 0.02	
t : 0.51	u : 0.25	w : 0.10	v : 0.10	y : 0.02	
t : 0.51	u : 0.25	w : 0.10	v : 0.10	y : 0.02	
u : 0.17	c : 0.16	e : 0.14	d : 0.10	v : 0.10	w : 0.08	g : 0.05	f : 0.05	a : 0.04	y : 0.02	b : 0.01	h : 0.01	
c : 0.22	e : 0.17	d : 0.17	f : 0.07	v : 0.07	w : 0.05	g : 0.05	y : 0.02	h : 0.02	b : 0.02	] : 0.02	a : 0.02	2 : 0.01	
c : 0.25	d : 0.20	e : 0.19	f : 0.07	g : 0.05	w : 0.04	y : 0.02	h : 0.02	] : 0.02	b : 0.02	a : 0.02	2 : 0.02	

#score	1463.257232984582
#seq	68
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_UTR_m3_run1.txt

#BEAR
iiiii"""ddddllldddd333iiiii	chr20:62374384-62374650(+)$1	266	206	233	10.9856
fdddd[ccc[aooooooaccc333ddd	chr17:61670458-61670691(+)$1	233	41	68	13.6849
"ffffff[cccooooooccc22fffff	chr5:175957754-175957977(-)$1	223	121	148	12.0583
bb[bb!!ddddoooooodddd22bb]b	chr2:86719365-86719800(+)$1	435	398	425	14.8521
a"""gggggggooooooggggggg333	chr17:47780204-47780474(-)$1	270	218	245	12.8069
!!ccca[ddddnnnnndddd22a]ccc	chr12:57023878-57024140(-)$1	262	203	230	12.3703
b$$$$$eeeeeooooooeeeee4444b	chr10:102122251-102122501(+)$1	250	180	207	13.3080
fffffa[ddddoooooodddd]a4444	chr5:10307637-10307859(-)$1	222	81	108	15.5703
"""ddddddddoooooodddd333ddd	chr7:150646456-150646715(-)$1	259	14	41	15.6386
eccc"""ddddnnnnndddd22cccdd	chr5:179156667-179156910(+)$1	243	131	158	11.8805
#ccc"""ddddoooooodddd4444cc	chr1:1594339-1594719(-)$1	380	110	137	17.4640
[ccc"""eeeeeooooooeeeee]ccc	chr19:49468580-49468785(+)$1	205	11	38	12.6804
[eeeee[ddddoooooodddd]eeeee	chr1:55317634-55317893(-)$1	259	176	203	14.0952
d[ccc"""cccooooooccc333ccc2	chr19:45422449-45422691(+)$1	242	39	66	15.5873
c!!ccc!!cccooooooccc333ccc2	chr11:32949407-32949645(+)$1	238	147	174	15.4400
dd[bb!!ddddoooooodddd22bb]d	chr1:161141326-161141645(-)$1	319	158	185	15.0209
[eeeee[ddddoooooodddd]eeeee	chr21:48084304-48084571(+)$1	267	8	35	14.0952
:ccc####ddddmmmmdddd4444ccc	chr12:111908292-111908630(-)$1	338	185	212	10.9554
[a$$$$$ddddoooooodddd]a]===	chr22:21805389-21805671(+)$1	282	17	44	15.8323
bb[ccc!!cccooooooccc22ccc]b	chr1:153921647-153921962(-)$1	315	172	199	14.0943
ccccc!!ddddoooooodddd22cccC	chr17:48459394-48459653(-)$1	259	211	238	15.7311
c!!ccc[cccooooooccc]ccc333c	chr16:24226400-24226669(+)$1	269	142	169	13.3385
[eeeee[ddddoooooodddd>>>>>>	chr6:35436085-35436300(+)$1	215	76	103	14.1593
cc####bb[bboooooobb333bb444	chr17:7143721-7143943(-)$1	222	179	206	12.0319
==$$$$$ddddoooooodddd22====	chr11:315076-315309(+)$1	233	171	198	16.0096
eeeee!!ddddoooooodddd22eeee	chr12:57031900-57032151(-)$1	251	207	234	15.0946
=====####bboooooobb========	chr20:44047857-44048103(+)$1	246	94	121	12.8344
bb[ccc!!cccooooooccc22ccc]b	chr3:50296010-50296280(+)$1	270	236	263	14.0943
ddddccc[cccoooooocccccc]ddd	chr9:4711102-4711364(-)$1	262	7	34	12.5588
ii$$$$$ddddoooooodddd4444ii	chr11:62392497-62392748(-)$1	251	12	39	16.3245
gggggggddddoooooodddd]ggggg	chr11:319624-319874(-)$1	250	13	40	14.4421
ddccc"""cccooooooccc4444ccc	chr6:43752280-43752538(+)$1	258	64	91	15.6034
eeeeccc[cccoooooocccccc22ee	chr16:21666942-21667194(+)$1	252	170	197	12.7606
eeccc!!ddddoooooodddd22ccc]	chr4:76569346-76569626(-)$1	280	81	108	16.2787
fff[ccc[cccoooooocccccc22ff	chr20:48741544-48741779(-)$1	235	107	134	12.7312
===========oooooo==========	chr17:42397065-42397291(-)$1	226	10	37	13.3307
::ccc[eeeeeooooooeeeee333cc	chr19:2037899-2038167(-)$1	268	212	239	12.7345
eee[cccddddnnnnndddd4444ccc	chr1:206760769-206761075(+)$1	306	265	292	11.5958
!ccc!!ccc[aooooooa]ccc333cc	chr5:167980266-167980519(-)$1	253	126	153	14.6937
!dddd!!ccc[aooooooa]ccc22dd	chr8:109241313-109241524(-)$1	211	109	136	12.0699
e[ccc[ddddddddllldddd4444dd	chr5:151185426-151185684(+)$1	258	13	40	11.2333
a[eeeeeddddoooooodddd]eeeee	chr3:197509848-197510134(+)$1	286	162	189	13.7126
##ccc"""ddddmmmmddddccc333b	chr12:54745146-54745372(+)$1	226	18	45	11.4166
e[ccc[eeeeeooooooeeeee333cc	chr3:38295563-38295843(+)$1	280	186	213	14.4913
%%%%%a[ddddoooooodddd]a6666	chr3:49397353-49397582(-)$1	229	166	193	11.9309
cc[a"""ddddnnnnndddd333accc	chr5:137524538-137524875(-)$1	337	96	123	13.1208
c[ccc[eeeeeooooooeeeee22ccc	chr5:1318110-1318470(-)$1	360	259	286	13.7822
c"""bbeeeeeooooooeeeee333bb	chr12:54629830-54630082(-)$1	252	190	217	13.1962
::dddd[ddddoooooodddd]dddd:	chr7:30671761-30672019(+)$1	258	42	69	11.5164

#otherMatches

#Seq PSSM
UCCCCUUAGCCCCAAGGGCCCUGGGGG	chr20:62374384-62374650(+)$1	266	206	233	10.9856
CCUUUACUGUGUGUACUCCAGGACGAA	chr17:61670458-61670691(+)$1	233	41	68	13.6849
CUCGGAUGGUGAGUCGGCAUGGGUCCG	chr5:175957754-175957977(-)$1	223	121	148	12.0583
AAAUGGAAUUUUAAUUUAAAUGACGCU	chr2:86719365-86719800(+)$1	435	398	425	14.8521
CCCAUGCAGUGGGUGGGCACUGUGCUU	chr17:47780204-47780474(-)$1	270	218	245	12.8069
CCGAGCCCGGCUGGACGCCGCUGCCUC	chr12:57023878-57024140(-)$1	262	203	230	12.3703
CUAGCUGCCACUUUCACGUGGCCUCCG	chr10:102122251-102122501(+)$1	250	180	207	13.3080
GGCCUCCGCGCGGUGCAGCGCAGUCUC	chr5:10307637-10307859(-)$1	222	81	108	15.5703
cauaguugaugguaggacauuuuagac	chr7:150646456-150646715(-)$1	259	14	41	15.6386
GGCAAACCAAUACAGAAUUGACUGCAG	chr5:179156667-179156910(+)$1	243	131	158	11.8805
UUCCUCAUCCUGGCAGAAGGAGCCUGG	chr1:1594339-1594719(-)$1	380	110	137	17.4640
CUCUUGCUUCAACAGUGUUUGGACGGA	chr19:49468580-49468785(+)$1	205	11	38	12.6804
uuuggagucagacaagccugaguccag	chr1:55317634-55317893(-)$1	259	176	203	14.0952
GACCUGAAGGGUGACAUCCCAGGAGGG	chr19:45422449-45422691(+)$1	242	39	66	15.5873
ACUAAAGAGUCUUCAGUGAUGAAUUUU	chr11:32949407-32949645(+)$1	238	147	174	15.4400
AGGGGGUAGGGGCCUCUCCCUCACUGC	chr1:161141326-161141645(-)$1	319	158	185	15.0209
UGGCUUCUGCACACUCCUGCGAAAGUC	chr21:48084304-48084571(+)$1	267	8	35	14.0952
UACUCCACGCAAUAUGUUGCCUACAGU	chr12:111908292-111908630(-)$1	338	185	212	10.9554
GCAAAUACCUCGAAGGGGAGGGGGGAG	chr22:21805389-21805671(+)$1	282	17	44	15.8323
GUCUGGUUCUGCCUACCCAGCCCCACA	chr1:153921647-153921962(-)$1	315	172	199	14.0943
UCCCUAAUUGCCAGUAAGCAAGGAGGU	chr17:48459394-48459653(-)$1	259	211	238	15.7311
CUUGUAUCCAAGUGUAUGGUUGCUUUG	chr16:24226400-24226669(+)$1	269	142	169	13.3385
AUGCGCAAGACAUGCUAGUCUCUUUUC	chr6:35436085-35436300(+)$1	215	76	103	14.1593
CAAUAAAGAGGAAACCACCAAGCUGAA	chr17:7143721-7143943(-)$1	222	179	206	12.0319
UUCAAUAAAGUGCACGUGCUUGUGAUG	chr11:315076-315309(+)$1	233	171	198	16.0096
UUGGUUCUGACAACAUAGUCAACACUG	chr12:57031900-57032151(-)$1	251	207	234	15.0946
CUGCGCUAUGCUGUGCUGCCGCGGGAG	chr20:44047857-44048103(+)$1	246	94	121	12.8344
CAAGAAGCGUGAGACGCCACCAUUCCU	chr3:50296010-50296280(+)$1	270	236	263	14.0943
GUGAAAUACCAAACUUAUGGAUUAUCA	chr9:4711102-4711364(-)$1	262	7	34	12.5588
GGUUGCUAAAGAACAUCCUUUUCCCUC	chr11:62392497-62392748(-)$1	251	12	39	16.3245
CUGAUCUUCCAGGCCUAUGGAUAGAUC	chr11:319624-319874(-)$1	250	13	40	14.4421
UCUCUCACCAGGAAAGACUGAUACAGA	chr6:43752280-43752538(+)$1	258	64	91	15.6034
UGAAGACUGGCAAUAAAGCUGUCCAUU	chr16:21666942-21667194(+)$1	252	170	197	12.7606
UUCAGUUAACAACUUUGUGUUCUCUGU	chr4:76569346-76569626(-)$1	280	81	108	16.2787
CUGGAGGACCUCAUCCAGGGCCUGACG	chr20:48741544-48741779(-)$1	235	107	134	12.7312
GAGGGAGGGGGCUUGUUUCCCUUCCCU	chr17:42397065-42397291(-)$1	226	10	37	13.3307
UCUGCCUUUUUGUAUCAAAGAACAAGC	chr19:2037899-2038167(-)$1	268	212	239	12.7345
UGUCAACAAACUGUUCGUUUUUAAGUU	chr1:206760769-206761075(+)$1	306	265	292	11.5958
UGCAGACAAGCUGAGUUGGUUGAAAUG	chr5:167980266-167980519(-)$1	253	126	153	14.6937
ACAGAUAGAAAUGCUUUAAGUUCACUC	chr8:109241313-109241524(-)$1	211	109	136	12.0699
ACUUCAAGGUCAUAAAUUAUGGAUAGC	chr5:151185426-151185684(+)$1	258	13	40	11.2333
AGUUAGUCUGUGCUAAGAUAGUACUGA	chr3:197509848-197510134(+)$1	286	162	189	13.7126
AUGACUUGGGCCUCUAGGCUGUCUCUG	chr12:54745146-54745372(+)$1	226	18	45	11.4166
AUGAACAAGGUUGUUUUACCUUAUUUU	chr3:38295563-38295843(+)$1	280	186	213	14.4913
ACUCCCACCUGACACACCAGGCGCUAA	chr3:49397353-49397582(-)$1	229	166	193	11.9309
AGACUCCUACCACCGAGGUGCCUGCUC	chr5:137524538-137524875(-)$1	337	96	123	13.1208
CGGCCAUGUCCUCACGCGGGCAGGGGU	chr5:1318110-1318470(-)$1	360	259	286	13.7822
GAAAAGACCUAUAACAUUGGGUGAACU	chr12:54629830-54630082(-)$1	252	190	217	13.1962
AUAACACUGGGCUUAACUCCAUUGUUU	chr7:30671761-30672019(+)$1	258	42	69	11.5164

#DB
(((((...((((...))))...)))))	chr20:62374384-62374650(+)$1	1	206	233	10.9856
(((((.(((.(......))))...)))	chr17:61670458-61670691(+)$1	1	41	68	13.6849
.((((((.(((......)))..)))))	chr5:175957754-175957977(-)$1	1	121	148	12.0583
((.((..((((......))))..)).)	chr2:86719365-86719800(+)$1	1	398	425	14.8521
(...(((((((......)))))))...	chr17:47780204-47780474(-)$1	1	218	245	12.8069
..((((.((((.....))))..).)))	chr12:57023878-57024140(-)$1	1	203	230	12.3703
(.....(((((......)))))....)	chr10:102122251-102122501(+)$1	1	180	207	13.3080
((((((.((((......)))).)....	chr5:10307637-10307859(-)$1	1	81	108	15.5703
...((((((((......))))...)))	chr7:150646456-150646715(-)$1	1	14	41	15.6386
)(((...((((.....))))..)))((	chr5:179156667-179156910(+)$1	1	131	158	11.8805
.(((...((((......))))....))	chr1:1594339-1594719(-)$1	1	110	137	17.4640
.(((...(((((......))))).)))	chr19:49468580-49468785(+)$1	1	11	38	12.6804
.(((((.((((......)))).)))))	chr1:55317634-55317893(-)$1	1	176	203	14.0952
(.(((...(((......)))...))).	chr19:45422449-45422691(+)$1	1	39	66	15.5873
(..(((..(((......)))...))).	chr11:32949407-32949645(+)$1	1	147	174	15.4400
((.((..((((......))))..)).)	chr1:161141326-161141645(-)$1	1	158	185	15.0209
.(((((.((((......)))).)))))	chr21:48084304-48084571(+)$1	1	8	35	14.0952
.(((....((((....))))....)))	chr12:111908292-111908630(-)$1	1	185	212	10.9554
.(.....((((......)))).).)))	chr22:21805389-21805671(+)$1	1	17	44	15.8323
((.(((..(((......)))..))).)	chr1:153921647-153921962(-)$1	1	172	199	14.0943
))(((..((((......))))..))))	chr17:48459394-48459653(-)$1	1	211	238	15.7311
(..(((.(((......))).)))...)	chr16:24226400-24226669(+)$1	1	142	169	13.3385
.(((((.((((......))))......	chr6:35436085-35436300(+)$1	1	76	103	14.1593
((....((.((......))...))...	chr17:7143721-7143943(-)$1	1	179	206	12.0319
((.....((((......))))..))))	chr11:315076-315309(+)$1	1	171	198	16.0096
(((((..((((......))))..))))	chr12:57031900-57032151(-)$1	1	207	234	15.0946
(((((....((......))))))))))	chr20:44047857-44048103(+)$1	1	94	121	12.8344
((.(((..(((......)))..))).)	chr3:50296010-50296280(+)$1	1	236	263	14.0943
(((((((.(((......)))))).)))	chr9:4711102-4711364(-)$1	1	7	34	12.5588
((.....((((......))))....))	chr11:62392497-62392748(-)$1	1	12	39	16.3245
(((((((((((......)))).)))))	chr11:319624-319874(-)$1	1	13	40	14.4421
(((((...(((......)))....)))	chr6:43752280-43752538(+)$1	1	64	91	15.6034
(((((((.(((......))))))..))	chr16:21666942-21667194(+)$1	1	170	197	12.7606
(((((..((((......))))..))).	chr4:76569346-76569626(-)$1	1	81	108	16.2787
(((.(((.(((......))))))..))	chr20:48741544-48741779(-)$1	1	107	134	12.7312
(((((((((((......))))))))))	chr17:42397065-42397291(-)$1	1	10	37	13.3307
..(((.(((((......)))))...))	chr19:2037899-2038167(-)$1	1	212	239	12.7345
(((.(((((((.....))))....)))	chr1:206760769-206761075(+)$1	1	265	292	11.5958
.(((..(((.(......).)))...))	chr5:167980266-167980519(-)$1	1	126	153	14.6937
.((((..(((.(......).)))..))	chr8:109241313-109241524(-)$1	1	109	136	12.0699
(.(((.((((((((...))))....))	chr5:151185426-151185684(+)$1	1	13	40	11.2333
(.(((((((((......)))).)))))	chr3:197509848-197510134(+)$1	1	162	189	13.7126
..(((...((((....)))))))...)	chr12:54745146-54745372(+)$1	1	18	45	11.4166
(.(((.(((((......)))))...))	chr3:38295563-38295843(+)$1	1	186	213	14.4913
.....(.((((......)))).)....	chr3:49397353-49397582(-)$1	1	166	193	11.9309
((.(...((((.....))))...))))	chr5:137524538-137524875(-)$1	1	96	123	13.1208
(.(((.(((((......)))))..)))	chr5:1318110-1318470(-)$1	1	259	286	13.7822
(...(((((((......)))))...))	chr12:54629830-54630082(-)$1	1	190	217	13.1962
..((((.((((......)))).)))).	chr7:30671761-30672019(+)$1	1	42	69	11.5164

#PSSM
e : 0.14	c : 0.14	[ : 0.10	b : 0.08	d : 0.08	f : 0.06	! : 0.06	: : 0.06	= : 0.06	i : 0.04	" : 0.04	a : 0.04	# : 0.04	g : 0.02	% : 0.02	
c : 0.16	e : 0.14	d : 0.10	[ : 0.10	f : 0.06	b : 0.06	" : 0.06	! : 0.06	= : 0.06	i : 0.04	: : 0.04	$ : 0.02	a : 0.02	g : 0.02	# : 0.02	% : 0.02	
c : 0.30	e : 0.14	[ : 0.10	d : 0.08	$ : 0.08	f : 0.06	" : 0.06	! : 0.04	= : 0.04	i : 0.02	# : 0.02	g : 0.02	% : 0.02	
c : 0.38	e : 0.12	d : 0.10	$ : 0.08	f : 0.04	b : 0.04	" : 0.04	= : 0.04	[ : 0.04	i : 0.02	# : 0.02	g : 0.02	% : 0.02	a : 0.02	
c : 0.36	e : 0.10	d : 0.08	$ : 0.08	" : 0.08	b : 0.06	f : 0.04	g : 0.04	# : 0.04	= : 0.04	i : 0.02	! : 0.02	% : 0.02	
" : 0.16	c : 0.16	! : 0.14	[ : 0.10	$ : 0.08	e : 0.08	a : 0.06	# : 0.06	g : 0.04	d : 0.04	f : 0.02	= : 0.02	b : 0.02	
! : 0.18	" : 0.16	[ : 0.16	c : 0.12	e : 0.12	$ : 0.06	g : 0.04	d : 0.04	# : 0.04	f : 0.02	b : 0.02	= : 0.02	
d : 0.46	e : 0.12	" : 0.08	c : 0.08	[ : 0.08	! : 0.06	# : 0.04	g : 0.02	b : 0.02	= : 0.02	
d : 0.53	c : 0.26	e : 0.12	g : 0.02	[ : 0.02	# : 0.02	= : 0.02	
d : 0.53	c : 0.22	e : 0.12	[ : 0.04	b : 0.04	g : 0.02	= : 0.02	
d : 0.53	c : 0.18	e : 0.12	a : 0.04	b : 0.04	g : 0.02	o : 0.02	= : 0.02	[ : 0.02	
o : 0.79	d : 0.08	n : 0.08	e : 0.02	a : 0.02	
o : 0.83	n : 0.08	m : 0.04	l : 0.02	d : 0.02	
o : 0.83	n : 0.08	m : 0.04	l : 0.02	d : 0.02	
o : 0.83	n : 0.08	l : 0.04	m : 0.04	
o : 0.83	n : 0.08	m : 0.04	d : 0.02	l : 0.02	
o : 0.81	d : 0.14	c : 0.02	l : 0.02	
d : 0.53	c : 0.20	e : 0.10	a : 0.04	o : 0.04	b : 0.04	g : 0.02	= : 0.02	
d : 0.53	c : 0.22	e : 0.12	b : 0.04	g : 0.02	= : 0.02	] : 0.02	a : 0.02	
d : 0.51	c : 0.22	e : 0.12	3 : 0.04	] : 0.04	= : 0.04	g : 0.02	
d : 0.38	c : 0.16	e : 0.12	3 : 0.10	2 : 0.10	4 : 0.06	= : 0.04	g : 0.02	
2 : 0.22	] : 0.16	3 : 0.14	c : 0.14	e : 0.12	4 : 0.12	= : 0.04	g : 0.02	> : 0.02	
3 : 0.18	c : 0.18	2 : 0.14	4 : 0.14	a : 0.08	e : 0.08	g : 0.04	= : 0.04	i : 0.02	f : 0.02	> : 0.02	b : 0.02	d : 0.02	
3 : 0.16	4 : 0.16	c : 0.14	] : 0.08	e : 0.08	2 : 0.08	b : 0.06	= : 0.06	g : 0.04	i : 0.02	f : 0.02	> : 0.02	6 : 0.02	a : 0.02	d : 0.02	
c : 0.28	3 : 0.14	4 : 0.12	d : 0.08	e : 0.08	= : 0.08	2 : 0.06	b : 0.04	i : 0.02	f : 0.02	> : 0.02	g : 0.02	6 : 0.02	
c : 0.30	d : 0.14	e : 0.10	] : 0.08	= : 0.08	3 : 0.06	4 : 0.06	i : 0.04	f : 0.04	> : 0.02	g : 0.02	6 : 0.02	b : 0.02	
c : 0.24	d : 0.14	b : 0.12	e : 0.10	= : 0.08	i : 0.04	f : 0.04	4 : 0.04	2 : 0.04	3 : 0.02	C : 0.02	> : 0.02	g : 0.02	] : 0.02	6 : 0.02	: : 0.02	

#score	671.2410333127818
#seq	49
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_UTR_m3_run2.txt

#BEAR
d[bb!!ddddoooooodddd22bbddd	chr10:70525654-70525906(+)$1	252	32	59	11.6829
eebb"""cccooooooccc]bb]eeee	chr13:107219820-107220101(-)$1	281	91	118	13.2691
bb[dddd[bboooooobb]dddd]bbF	chr14:102550712-102550941(-)$1	229	156	183	11.3336
:iiiiiiiiiooooooiiiiiiiii::	chr12:123003445-123003677(-)$1	232	84	111	11.6679
::ccc!!cccooooooccc333ccc:b	chrX:53439748-53439984(-)$1	236	85	112	11.9269
ee[dddd[bboooooobb]dddd333e	chr5:33445344-33445577(+)$1	233	168	195	12.9650
cc"""a!!bboooooobb22a333ccc	chr1:31836834-31837153(+)$1	319	109	136	15.0050
"""gggggggooooooggggggg4444	chr7:23561801-23562146(-)$1	345	121	148	14.0299
=========rrrrrrrrr=========	chr11:2972388-2972646(-)$1	258	86	113	9.7786
!bb[bb!!bboooooobb22bbbb22a	chr1:46073885-46074159(+)$1	274	72	99	12.2061
eeeee[a[bboooooobb]aeeeee::	chr6:32945889-32946185(+)$1	296	121	148	11.1114
ff"""cccbboooooobb]ccc333ff	chr11:3022264-3022510(-)$1	246	28	55	14.0572
###gggggggooooooggggggg4444	chr1:224492625-224492940(-)$1	315	79	106	13.9636
[a[gggggggooooooggggggg333a	chr8:124382080-124382361(-)$1	281	31	58	14.3297
$$$eeeee[aooooooa]eeeee333b	chr5:137506627-137506899(-)$1	272	85	112	11.9925
gg$$$$$cccooooooccc22gggggg	chr3:9488646-9488873(+)$1	227	127	154	14.4274
eee[ffffffooooooffffffeeeee	chr15:93543643-93543875(+)$1	232	161	188	10.8763
fff$$$$$bboooooobb333ffffff	chr15:78841079-78841424(+)$1	345	78	105	13.1027
eee####cccooooooccc]eeeee]b	chr16:89349825-89350099(-)$1	274	12	39	13.8009
fffff[ddddoooooodddd22fffff	chr12:95867796-95868041(+)$1	245	187	214	11.5558
d[ccc[acccooooooccc]a]ccc]d	chr19:3575543-3575789(+)$1	246	175	202	13.9345
""dddd!!bboooooobbdddd333dd	chr7:106840509-106840771(+)$1	262	201	228	13.0305
###gggggggoooooogggggggccce	chr17:62498448-62498709(-)$1	261	34	61	13.7181
gg$$$$$cccooooooccc22gggggg	chr3:9488633-9488846(+)$1	213	140	167	14.4274
::ccc!!cccooooooccc333ccc:b	chrX:53439784-53440018(-)$1	234	119	146	11.9269
hhhhbb!!bboooooobb22bb]hhhh	chr3:40503331-40503556(+)$1	225	130	157	11.4697
iiiiiiii[bbnnnnnbb]iiiiiiii	chr6:30539157-30539437(+)$1	280	237	264	9.8110
a[a[ffffffooooooffffff]a]a:	chr17:27001278-27001559(+)$1	281	10	37	11.1517
==========lll==========a]ii	chr8:117861102-117861370(-)$1	268	89	116	10.6507
ggggggddddoooooodddd]gggggg	chrX:118763273-118763572(-)$1	299	61	88	13.0990
==========oooooo===========	chr8:124381216-124381483(-)$1	267	25	52	15.0685
hffffff[cccooooooccc]ffffff	chr10:70546202-70546421(+)$1	219	146	173	10.4336
[dddd!!cccoooooocccdddd]bb3	chr19:15510025-15510286(-)$1	261	46	73	12.5239
[a[a!!ddddoooooodddd]a]aeee	chr19:39936347-39936625(+)$1	278	236	263	13.3017
ggggggg!!bbnnnnnbb22ggggggg	chr8:124383041-124383248(-)$1	207	137	164	9.4897
gg####ddddooooooddddggggggg	chr19:55649305-55649543(-)$1	238	70	97	13.6779
&&&gggggggooooooggggggg333d	chr11:129992163-129992425(+)$1	262	64	91	12.4011
$$$$ccccccooooooccc]ccc333g	chr5:891652-891958(-)$1	306	43	70	14.0161
ff"""cccbboooooobb]ccc333ff	chr11:3022310-3022578(-)$1	268	96	123	14.0572
eeee!!ddddoooooodddd22eeeee	chr1:185275520-185275852(-)$1	332	77	104	12.2453
eee!!a[cccooooooccc]a22eeee	chr12:123003283-123003506(-)$1	223	86	113	13.6368
gggg"""cccooooooccc4444gggg	chr10:70532682-70532957(+)$1	275	163	190	14.9988
hhhhhh"""aooooooa333hhhhhhh	chr17:42477340-42477637(-)$1	297	178	205	11.5735
ccc"""ddddoooooodddd22ccc55	chr14:73577692-73577957(+)$1	265	210	237	11.8342
gg$$$$$cccooooooccc22gggggg	chr3:9488747-9488985(+)$1	238	26	53	14.4274
ggg[dddd[aooooooa]dddd]gggg	chr5:179153580-179153800(+)$1	220	183	210	12.5527
====="""cccmmmmccc4444=====	chr12:56563827-56564094(-)$1	267	79	106	9.9204
##bb"""cccooooooccc22bb333g	chr21:34143892-34144195(-)$1	303	226	253	14.7216
:iiiiiiiiiooooooiiiiiiiii::	chr12:76453477-76453682(-)$1	205	131	158	11.6679
#==========nnnnn==========5	chr12:76449743-76449995(-)$1	252	210	237	10.1192
!iiiiiiiiiooooooiiiiiiiii]d	chr8:54906115-54906362(-)$1	247	142	169	14.4318
""eeeee[bboooooobb22eeeee>>	chrX:53438984-53439233(-)$1	249	43	70	12.4895
d[bb!!ddddoooooodddd22bbddd	chr10:70525562-70525797(+)$1	235	124	151	11.6829
hhhh####bboooooobb4444hhhhh	chr11:17332348-17332658(+)$1	310	197	224	12.8465
ggggggg[bboooooobb]gggggggg	chr12:76453488-76453737(-)$1	249	18	45	14.2427

#otherMatches

#Seq PSSM
CGAGAAAGAAGAUAUAUUUUGCCUGAU	chr10:70525654-70525906(+)$1	252	32	59	11.6829
GCGCACGGUGAGCAAGCGCAGCAGCCU	chr13:107219820-107220101(-)$1	281	91	118	13.2691
CAGAGUUUUCAUCAUGGAUAACUGUGA	chr14:102550712-102550941(-)$1	229	156	183	11.3336
ACUUCUUCUUAAAACAGGGAAGAAGAC	chr12:123003445-123003677(-)$1	232	84	111	11.6679
gagcugggcaaaaugaugcgggagcag	chrX:53439748-53439984(-)$1	236	85	112	11.9269
AAAAGUUAUCAUCACAGAGGGCUCUGU	chr5:33445344-33445577(+)$1	233	168	195	12.9650
UGAUACAGGCAAGAGGGCAAGGCACAC	chr1:31836834-31837153(+)$1	319	109	136	15.0050
GUUUUUUCCAAGAAUGUGGAAGAUAAA	chr7:23561801-23562146(-)$1	345	121	148	14.0299
ACUUUUUAAAUACAGGAAUUAGAAGGU	chr11:2972388-2972646(-)$1	258	86	113	9.7786
GCUGCUAAUGAAGAGACACAAGAGAGA	chr1:46073885-46074159(+)$1	274	72	99	12.2061
CAUCGAGGCCGAGCUGGGGCCGAUGAA	chr6:32945889-32946185(+)$1	296	121	148	11.1114
UCAGGGUCUGCCCACACAUGACAUGGA	chr11:3022264-3022510(-)$1	246	28	55	14.0572
AAGAUUCUUCUCUUUUGGAGAGUGAUA	chr1:224492625-224492940(-)$1	315	79	106	13.9636
CCUAUGUUAAAAAUUGUUAACAUUUUG	chr8:124382080-124382361(-)$1	281	31	58	14.3297
CUGUUGAAGAUGUUAUUGUUCGGAAAU	chr5:137506627-137506899(-)$1	272	85	112	11.9925
UUGAAAACUUAGAGAAAAGAAAGAAGC	chr3:9488646-9488873(+)$1	227	127	154	14.4274
GAGCAUGGAAUUGAGCUUUCAUCUCCU	chr15:93543643-93543875(+)$1	232	161	188	10.8763
AAUGGAAAGACAGUAAUCAGAGUUCUC	chr15:78841079-78841424(+)$1	345	78	105	13.1027
CUGGAGAGCUGCAAGGAGCGCAGGGAC	chr16:89349825-89350099(-)$1	274	12	39	13.8009
CCGGGAGCCACCUGAAUGGCGACCUGG	chr12:95867796-95868041(+)$1	245	187	214	11.5558
cggguguaucaccugaggucagaccag	chr19:3575543-3575789(+)$1	246	175	202	13.9345
AAUCCUGACUGUUGGAAGAGGAAAAGA	chr7:106840509-106840771(+)$1	262	201	228	13.0305
AUUAUUAGACUUAUUCGUCUAAUGGAA	chr17:62498448-62498709(-)$1	261	34	61	13.7181
UUGAAAACUUAGAGAAAAGAAAGAAGC	chr3:9488633-9488846(+)$1	213	140	167	14.4274
gagcugggcaaaaugaugcgggagcag	chrX:53439784-53440018(-)$1	234	119	146	11.9269
GCUUCAAAAGGCAGCUCUCCUGAAAGC	chr3:40503331-40503556(+)$1	225	130	157	11.4697
GUGUUUUAAGAGAGGGUCAUGGGGCAC	chr6:30539157-30539437(+)$1	280	237	264	9.8110
CAUGUCUUCCAGAUGAGGAGGAGGAGG	chr17:27001278-27001559(+)$1	281	10	37	11.1517
CAUUUUUAUUCAGGAUGAAGAUGCAUC	chr8:117861102-117861370(-)$1	268	89	116	10.6507
ACAGGGGAUUCUCUCCAAUCUCCCUGU	chrX:118763273-118763572(-)$1	299	61	88	13.0990
auauauauauauacaaauauauauaua	chr8:124381216-124381483(-)$1	267	25	52	15.0685
UGGCUUUUGUUUAUUUUGAUCAAAGUC	chr10:70546202-70546421(+)$1	219	146	173	10.4336
UGCCCAUCUGCUCCCACAGGGGCCCUA	chr19:15510025-15510286(-)$1	261	46	73	12.5239
CAGUGACGGCGAGGAGGCCGAGGUCUG	chr19:39936347-39936625(+)$1	278	236	263	13.3017
AUUGAAUUUAAGAACUUUUUAUUUAGU	chr8:124383041-124383248(-)$1	207	137	164	9.4897
GUCCAUGAGGUUAACCCCUUACUUCCC	chr19:55649305-55649543(-)$1	238	70	97	13.6779
GACUUCACAGAAGCAGCUGUggaugag	chr11:129992163-129992425(+)$1	262	64	91	12.4011
GAAGUGAAGUGACUGAACUCUCAGGAU	chr5:891652-891958(-)$1	306	43	70	14.0161
UCAGGGUCUGCCCACACAUGACAUGGA	chr11:3022310-3022578(-)$1	268	96	123	14.0572
UGAUUUAUCUCCCCAUAGGUUUAUUAA	chr1:185275520-185275852(-)$1	332	77	104	12.2453
GGCAGAAGUCACUCAAGAUCUAGGUCU	chr12:123003283-123003506(-)$1	223	86	113	13.6368
UGAAGAAGAUGGUAUGAUUGAAAUUUA	chr10:70532682-70532957(+)$1	275	163	190	14.9988
UCCCAGCAAGAAAGAACGAUCUGGGAA	chr17:42477340-42477637(-)$1	297	178	205	11.5735
CACCCCUGCAAAUACCUGUAUUGUGCU	chr14:73577692-73577957(+)$1	265	210	237	11.8342
UUGAAAACUUAGAGAAAAGAAAGAAGC	chr3:9488747-9488985(+)$1	238	26	53	14.4274
AAGGAAAGGGGUCACACAUUUUGUUUU	chr5:179153580-179153800(+)$1	220	183	210	12.5527
UCUUUCUUUUCUCAUGGGCCCAGAGGA	chr12:56563827-56564094(-)$1	267	79	106	9.9204
AGGCCCGGCGGGUGAACGUGCGCAAGC	chr21:34143892-34144195(-)$1	303	226	253	14.7216
UUUUUAAGAUGAUAAAAUCUUAGGACU	chr12:76453477-76453682(-)$1	205	131	158	11.6679
UACUUUGAAGGGUAAACCUUUGAAGUU	chr12:76449743-76449995(-)$1	252	210	237	10.1192
ACAGUAUAGACAUAUAUUUAUAUUGAA	chr8:54906115-54906362(-)$1	247	142	169	14.4318
GAAUUGAACCAGAAGCGGCCUCAGUAC	chrX:53438984-53439233(-)$1	249	43	70	12.4895
CGAGAAAGAAGAUAUAUUUUGCCUGAU	chr10:70525562-70525797(+)$1	235	124	151	11.6829
GUUAAUCACCCAGUAAGGAUUGUGACU	chr11:17332348-17332658(+)$1	310	197	224	12.8465
CACUGGUUUUAGCUUGGAUGCCAGUGU	chr12:76453488-76453737(-)$1	249	18	45	14.2427

#DB
(.((..((((......))))..)))))	chr10:70525654-70525906(+)$1	1	32	59	11.6829
((((...(((......))).)).))))	chr13:107219820-107220101(-)$1	1	91	118	13.2691
((.((((.((......)).)))).)))	chr14:102550712-102550941(-)$1	1	156	183	11.3336
.(((((((((......)))))))))..	chr12:123003445-123003677(-)$1	1	84	111	11.6679
..(((..(((......)))...))).(	chrX:53439748-53439984(-)$1	1	85	112	11.9269
((.((((.((......)).))))...)	chr5:33445344-33445577(+)$1	1	168	195	12.9650
((...(..((......))..)...)))	chr1:31836834-31837153(+)$1	1	109	136	15.0050
...(((((((......)))))))....	chr7:23561801-23562146(-)$1	1	121	148	14.0299
(((((((((.........)))))))))	chr11:2972388-2972646(-)$1	1	86	113	9.7786
.((.((..((......))..))))..)	chr1:46073885-46074159(+)$1	1	72	99	12.2061
(((((.(.((......)).))))))..	chr6:32945889-32946185(+)$1	1	121	148	11.1114
((...(((((......)).)))...))	chr11:3022264-3022510(-)$1	1	28	55	14.0572
...(((((((......)))))))....	chr1:224492625-224492940(-)$1	1	79	106	13.9636
.(.(((((((......)))))))...)	chr8:124382080-124382361(-)$1	1	31	58	14.3297
...(((((.(......).)))))...)	chr5:137506627-137506899(-)$1	1	85	112	11.9925
((.....(((......)))..))))))	chr3:9488646-9488873(+)$1	1	127	154	14.4274
(((.((((((......)))))))))))	chr15:93543643-93543875(+)$1	1	161	188	10.8763
(((.....((......))...))))))	chr15:78841079-78841424(+)$1	1	78	105	13.1027
(((....(((......))).))))).)	chr16:89349825-89350099(-)$1	1	12	39	13.8009
(((((.((((......))))..)))))	chr12:95867796-95868041(+)$1	1	187	214	11.5558
(.(((.((((......))).).))).)	chr19:3575543-3575789(+)$1	1	175	202	13.9345
..((((..((......))))))...))	chr7:106840509-106840771(+)$1	1	201	228	13.0305
...(((((((......)))))))))))	chr17:62498448-62498709(-)$1	1	34	61	13.7181
((.....(((......)))..))))))	chr3:9488633-9488846(+)$1	1	140	167	14.4274
..(((..(((......)))...))).(	chrX:53439784-53440018(-)$1	1	119	146	11.9269
((((((..((......))..)).))))	chr3:40503331-40503556(+)$1	1	130	157	11.4697
((((((((.((.....)).))))))))	chr6:30539157-30539437(+)$1	1	237	264	9.8110
(.(.((((((......)))))).).).	chr17:27001278-27001559(+)$1	1	10	37	11.1517
((((((((((...))))))))))).))	chr8:117861102-117861370(-)$1	1	89	116	10.6507
((((((((((......)))).))))))	chrX:118763273-118763572(-)$1	1	61	88	13.0990
((((((((((......)))))))))))	chr8:124381216-124381483(-)$1	1	25	52	15.0685
)((((((.(((......))).))))))	chr10:70546202-70546421(+)$1	1	146	173	10.4336
.((((..(((......))))))).)).	chr19:15510025-15510286(-)$1	1	46	73	12.5239
.(.(..((((......)))).).))))	chr19:39936347-39936625(+)$1	1	236	263	13.3017
(((((((..((.....))..)))))))	chr8:124383041-124383248(-)$1	1	137	164	9.4897
((....((((......)))))))))))	chr19:55649305-55649543(-)$1	1	70	97	13.6779
...(((((((......)))))))...)	chr11:129992163-129992425(+)$1	1	64	91	12.4011
....((((((......))).)))...)	chr5:891652-891958(-)$1	1	43	70	14.0161
((...(((((......)).)))...))	chr11:3022310-3022578(-)$1	1	96	123	14.0572
((((..((((......))))..)))))	chr1:185275520-185275852(-)$1	1	77	104	12.2453
(((..(.(((......))).)..))))	chr12:123003283-123003506(-)$1	1	86	113	13.6368
((((...(((......)))....))))	chr10:70532682-70532957(+)$1	1	163	190	14.9988
((((((...(......)...)))))))	chr17:42477340-42477637(-)$1	1	178	205	11.5735
(((...((((......))))..)))..	chr14:73577692-73577957(+)$1	1	210	237	11.8342
((.....(((......)))..))))))	chr3:9488747-9488985(+)$1	1	26	53	14.4274
(((.((((.(......).)))).))))	chr5:179153580-179153800(+)$1	1	183	210	12.5527
(((((...(((....)))....)))))	chr12:56563827-56564094(-)$1	1	79	106	9.9204
..((...(((......)))..))...)	chr21:34143892-34144195(-)$1	1	226	253	14.7216
.(((((((((......)))))))))..	chr12:76453477-76453682(-)$1	1	131	158	11.6679
.((((((((((.....)))))))))).	chr12:76449743-76449995(-)$1	1	210	237	10.1192
.(((((((((......))))))))).)	chr8:54906115-54906362(-)$1	1	142	169	14.4318
..(((((.((......))..)))))..	chrX:53438984-53439233(-)$1	1	43	70	12.4895
(.((..((((......))))..)))))	chr10:70525562-70525797(+)$1	1	124	151	11.6829
((((....((......))....)))))	chr11:17332348-17332658(+)$1	1	197	224	12.8465
(((((((.((......)).))))))))	chr12:76453488-76453737(-)$1	1	18	45	14.2427

#PSSM
g : 0.16	e : 0.12	: : 0.07	= : 0.07	f : 0.07	# : 0.07	h : 0.07	d : 0.05	" : 0.05	[ : 0.05	c : 0.03	! : 0.03	$ : 0.03	b : 0.01	i : 0.01	a : 0.01	& : 0.01	
g : 0.16	e : 0.12	= : 0.09	f : 0.09	[ : 0.07	i : 0.07	" : 0.05	# : 0.05	h : 0.05	b : 0.03	: : 0.03	c : 0.03	a : 0.03	$ : 0.03	d : 0.01	& : 0.01	
e : 0.10	b : 0.09	= : 0.09	$ : 0.09	g : 0.09	[ : 0.07	i : 0.07	c : 0.07	" : 0.07	# : 0.05	f : 0.05	h : 0.05	d : 0.03	a : 0.01	& : 0.01	
g : 0.16	= : 0.09	$ : 0.09	b : 0.07	d : 0.07	i : 0.07	" : 0.07	[ : 0.07	e : 0.07	c : 0.05	h : 0.05	# : 0.03	f : 0.03	a : 0.01	! : 0.01	
g : 0.14	" : 0.12	! : 0.09	d : 0.09	= : 0.09	i : 0.07	c : 0.07	$ : 0.07	f : 0.07	e : 0.05	# : 0.05	b : 0.03	h : 0.01	
g : 0.14	! : 0.12	" : 0.09	d : 0.07	i : 0.07	= : 0.07	$ : 0.07	[ : 0.05	c : 0.05	f : 0.05	# : 0.05	a : 0.03	b : 0.03	e : 0.03	h : 0.01	
d : 0.20	! : 0.12	g : 0.12	" : 0.09	i : 0.07	= : 0.07	$ : 0.07	c : 0.05	f : 0.05	a : 0.03	e : 0.03	# : 0.03	[ : 0.01	
c : 0.27	d : 0.16	[ : 0.10	! : 0.09	g : 0.09	i : 0.07	= : 0.07	f : 0.03	" : 0.03	e : 0.01	$ : 0.01	# : 0.01	
c : 0.27	b : 0.23	d : 0.14	g : 0.09	= : 0.07	i : 0.05	[ : 0.05	f : 0.03	! : 0.01	" : 0.01	
c : 0.27	b : 0.27	d : 0.14	g : 0.09	i : 0.05	a : 0.05	= : 0.05	f : 0.03	r : 0.01	
o : 0.87	b : 0.03	c : 0.03	r : 0.01	l : 0.01	= : 0.01	
o : 0.89	n : 0.05	r : 0.01	l : 0.01	m : 0.01	
o : 0.89	n : 0.05	r : 0.01	l : 0.01	m : 0.01	
o : 0.89	n : 0.05	r : 0.01	= : 0.01	m : 0.01	
o : 0.89	n : 0.05	r : 0.01	= : 0.01	m : 0.01	
o : 0.89	n : 0.05	r : 0.01	= : 0.01	c : 0.01	
b : 0.27	c : 0.25	d : 0.14	g : 0.09	i : 0.05	a : 0.05	= : 0.05	f : 0.03	r : 0.01	o : 0.01	
c : 0.27	b : 0.27	d : 0.14	g : 0.09	i : 0.05	= : 0.05	] : 0.03	f : 0.03	r : 0.01	3 : 0.01	
c : 0.25	d : 0.18	] : 0.12	2 : 0.09	g : 0.09	= : 0.07	i : 0.05	f : 0.03	3 : 0.03	4 : 0.03	e : 0.01	
d : 0.23	2 : 0.16	g : 0.10	] : 0.09	i : 0.07	3 : 0.07	= : 0.07	c : 0.05	4 : 0.05	f : 0.03	a : 0.01	e : 0.01	
2 : 0.16	g : 0.14	d : 0.09	i : 0.07	= : 0.07	e : 0.07	b : 0.05	3 : 0.05	a : 0.05	c : 0.05	] : 0.05	4 : 0.05	f : 0.03	h : 0.01	
g : 0.21	2 : 0.10	d : 0.09	b : 0.07	i : 0.07	= : 0.07	e : 0.07	f : 0.07	3 : 0.05	c : 0.05	4 : 0.05	] : 0.01	a : 0.01	h : 0.01	
g : 0.21	e : 0.10	] : 0.09	c : 0.09	= : 0.09	b : 0.07	i : 0.07	3 : 0.07	d : 0.05	f : 0.05	h : 0.03	2 : 0.01	4 : 0.01	
3 : 0.18	g : 0.16	e : 0.12	c : 0.09	i : 0.07	= : 0.07	b : 0.05	f : 0.05	h : 0.05	a : 0.05	] : 0.03	4 : 0.03	
3 : 0.16	g : 0.16	e : 0.14	c : 0.10	i : 0.07	= : 0.07	f : 0.05	h : 0.05	d : 0.03	b : 0.03	4 : 0.03	] : 0.03	2 : 0.01	
g : 0.16	3 : 0.10	e : 0.09	: : 0.09	f : 0.09	= : 0.07	d : 0.05	] : 0.05	h : 0.05	b : 0.03	c : 0.03	4 : 0.03	i : 0.03	2 : 0.01	a : 0.01	5 : 0.01	> : 0.01	
g : 0.20	e : 0.12	d : 0.10	f : 0.09	: : 0.07	b : 0.07	= : 0.05	h : 0.05	4 : 0.03	a : 0.03	i : 0.03	5 : 0.03	F : 0.01	c : 0.01	3 : 0.01	> : 0.01	

#score	694.6657013056438
#seq	55
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_transcript_m1_run1.txt

#BEAR
a[gggggggwwwwwwwwwwwwwwggggg	chr5:34953930-34954169(+)$1	239	152	180	23.8556
c!!eeeeewwwwwwwwwwwwwweeeee]	chr15:40943567-40943809(+)$1	242	150	178	25.1194
ccc[a!!bbuuuuuuuuuuuubb333a]	chr12:56510477-56510680(+)$1	203	143	171	24.0314
dd!!eeeeeuuuuuuuuuuuueeeeedd	chr1:94341102-94341371(-)$1	269	176	204	24.8193
cdddd[dddduuuuuuuuuuuudddd22	chr14:78082843-78083106(-)$1	263	106	134	22.3450
GGffffffwwwwwwwwwwwwwwffffff	chr7:151877735-151877971(-)$1	236	28	56	22.2813
f!!cccxxxxxxxxxxxxxxxccc]fff	chr12:132464139-132464381(+)$1	242	130	158	19.7095
eeee[eeeeettttttttttteeeee]e	chr2:233599800-233600043(+)$1	243	172	200	22.8882
bb!!eeeeeuuuuuuuuuuuueeeee22	chr15:77450769-77451133(-)$1	364	293	321	25.2958
d[bb!!cccuuuuuuuuuuuuccc22bb	chr4:123096908-123097165(+)$1	257	121	149	23.8963
iiiiiiiivvvvvvvvvvvvviiiiiii	chr21:38559282-38559546(+)$1	264	212	240	24.7955
:ccc[dddduuuuuuuuuuuuddddccc	chr18:265415-265631(-)$1	216	114	142	23.4755
==========ttttttttttt=======	chr1:16958681-16958928(-)$1	247	40	68	23.2447
d"""ddddwwwwwwwwwwwwwwdddd22	chr20:47592589-47592836(+)$1	247	158	186	24.1844
GGGffffffvvvvvvvvvvvvvffffff	chr11:108811021-108811303(+)$1	282	203	231	22.2771
hh"""dddduuuuuuuuuuuudddd333	chr11:75590932-75591188(+)$1	256	143	171	24.8357
eeeee[cccwwwwwwwwwwwwwwccc22	chr1:26799003-26799213(+)$1	210	91	119	23.5375
ff[eeeeewwwwwwwwwwwwwweeeee]	chr1:193119334-193119599(+)$1	265	62	90	24.5585
d[ccc[ddddtttttttttttdddd]cc	chr2:71576241-71576555(+)$1	314	236	264	22.6134
"bb"""ddddtttttttttttdddd333	chr2:39570454-39570693(-)$1	239	15	43	22.8182
"""eeeeeyyyyyyyyyyyyyyyyeeee	chr18:9211666-9211884(+)$1	218	85	113	21.6700
HHggggggguuuuuuuuuuuuggggggg	chrX:48834732-48834942(-)$1	210	161	189	23.4430
###ffffffwwwwwwwwwwwwwwfffff	chr16:23570868-23571103(+)$1	235	45	73	23.2949
f!!bbbbwwwwwwwwwwwwwwbb]bb22	chr16:89347814-89348080(-)$1	266	117	145	22.0747
hhh!!bb[auuuuuuuuuuuua]bb333	chr7:158694966-158695177(+)$1	211	124	152	23.8865
hhhh[dddduuuuuuuuuuuuddddhhh	chr10:105762721-105763003(+)$1	282	207	235	23.0982
g!!ffffffuuuuuuuuuuuuffffff2	chr9:139910779-139911017(-)$1	238	144	172	24.5148
gccceeeeeuuuuuuuuuuuueeeee]c	chr19:52587939-52588214(-)$1	275	167	195	25.1117
:::a!!cccuuuuuuuuuuuuccc22a:	chr19:18965324-18965574(+)$1	250	56	84	21.3931
ddd"""cccuuuuuuuuuuuuccc4444	chr2:99980703-99980984(+)$1	281	146	174	24.7952
EEbb[dddduuuuuuuuuuuudddd]bb	chr17:65888038-65888249(+)$1	211	11	39	21.5746
dd!!eeeeeuuuuuuuuuuuueeeee22	chr7:91708337-91708606(+)$1	269	200	228	25.3689
gg:ccccccwwwwwwwwwwwwwwccc]c	chr11:64536960-64537181(-)$1	221	103	131	22.8841
"""eeeeevvvvvvvvvvvvveeeee44	chr22:31851801-31852072(-)$1	271	130	158	25.7097
========vvvvvvvvvvvvv=======	chr17:59934445-59934694(-)$1	249	56	84	25.2339
eeeeeeeeevvvvvvvvvvvvveeeee:	chr12:104340498-104340731(+)$1	233	94	122	23.5441
=========wwwwwwwwwwwwww=====	chr5:137278721-137278937(-)$1	216	99	127	24.1278
fffffffffuuuuuuuuuuuuffffff6	chr11:63965289-63965536(+)$1	247	115	143	23.1049
feeeee[aauuuuuuuuuuuua]a]eee	chr1:35653564-35653792(-)$1	228	94	122	24.3113
ccc[eeeeevvvvvvvvvvvvveeeee]	chr20:57226237-57226541(+)$1	304	57	85	25.1349
ddd"""cccuuuuuuuuuuuuccc333d	chr8:38874737-38875035(+)$1	298	195	223	24.8476
:a[eeeeevvvvvvvvvvvvveeeee]a	chr1:46826362-46826601(+)$1	239	136	164	24.6496
$$$$eeeeeuuuuuuuuuuuueeeeecc	chrX:11197415-11197671(-)$1	256	184	212	24.5421
ff"""bbwwwwwwwwwwwwwwbb]ffff	chrX:108906356-108906639(-)$1	283	45	73	22.5862
c!!eeeeewwwwwwwwwwwwwweeeee]	chr15:40943609-40943848(+)$1	239	108	136	25.1194
cgggggggvvvvvvvvvvvvvggggggg	chr3:142761901-142762209(+)$1	308	226	254	24.8140
a[dddd[ccctttttttttttccc]ddd	chr11:118919352-118919616(-)$1	264	4	32	22.4720
bccc[cccvvvvvvvvvvvvvccc]ccc	chr5:137520446-137520676(+)$1	230	59	87	24.8912
fffff!!avvvvvvvvvvvvva22ffff	chr17:38318030-38318264(+)$1	234	50	78	23.5438
hhhhh[cccuuuuuuuuuuuuccc]hhh	chr19:10286154-10286392(-)$1	238	178	206	23.6429
bbabb[cccuuuuuuuuuuuucccbb]a	chr1:11315987-11316252(-)$1	265	141	169	23.7904
b"""ddddvvvvvvvvvvvvvdddd333	chr1:100584505-100584751(-)$1	246	104	132	25.2997
ddccccccvvvvvvvvvvvvvccc22cc	chr12:122992770-122992989(-)$1	219	39	67	24.2887
dddd[eeeeettttttttttteeeee]d	chr1:24975295-24975567(+)$1	272	179	207	22.7514
a!!eeeeevvvvvvvvvvvvveeeee22	chr15:43067341-43067677(-)$1	336	270	298	25.7657
g!!cccxxxxxxxxxxxxxxxccc]ggg	chr10:32311066-32311285(-)$1	219	138	166	20.0478
dd[ffffffwwwwwwwwwwwwwwfffff	chr19:15383754-15384042(-)$1	288	101	129	22.9479
###ffffffuuuuuuuuuuuuffffffd	chr6:108202296-108202552(-)$1	256	67	95	24.0507
###gggggggtttttttttttggggggg	chr2:45832449-45832680(-)$1	231	28	56	23.0012
bb[ddddwwwwwwwwwwwwwwddddbb]	chr20:39729778-39729996(+)$1	218	95	123	22.6488
!hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr15:93543703-93543950(+)$1	247	183	211	21.7800

#otherMatches

#Seq PSSM
GUACCUGCUGAACCACAAACAAUGGUAG	chr5:34953930-34954169(+)$1	239	152	180	23.8556
GACUUUAUGCAAAAACAAAGAAAUAGAA	chr15:40943567-40943809(+)$1	242	150	178	25.1194
UUGGCGAGUAGUAGCGAGGAGACGAAGG	chr12:56510477-56510680(+)$1	203	143	171	24.0314
UUAAUUGUGCUGUUAGGUUUUCACAGAA	chr1:94341102-94341371(-)$1	269	176	204	24.8193
UGCGGAGCGGGACUUGGAGCAGCCGCCG	chr14:78082843-78083106(-)$1	263	106	134	22.3450
CUGUGCAUCUUCAAACUCUCCAAUGCAC	chr7:151877735-151877971(-)$1	236	28	56	22.2813
GGGCCGGAAGCACAGUAGAGACGGACCU	chr12:132464139-132464381(+)$1	242	130	158	19.7095
UUUGAUAUUGGAUGACUAAUACAGUAGU	chr2:233599800-233600043(+)$1	243	172	200	22.8882
GUGCAAAUGUCCAAUAAGUAGUAUUUAA	chr15:77450769-77451133(-)$1	364	293	321	25.2958
CGGUGGUGGAAAAUGUAUAACCCAAAAC	chr4:123096908-123097165(+)$1	257	121	149	23.8963
UGUGUUUCUUUAAUGACAUAUGAGGCAU	chr21:38559282-38559546(+)$1	264	212	240	24.7955
AGGCCUUGAACAACAAAAACAUCAAGCC	chr18:265415-265631(-)$1	216	114	142	23.4755
UCUGUUGCUCCCCCAACUCCAGAGUGAC	chr1:16958681-16958928(-)$1	247	40	68	23.2447
UGCCGUUAACUAGCAGGGAUUCUAGCAA	chr20:47592589-47592836(+)$1	247	158	186	24.1844
UUGGGGGCACUUAGGUACCAUAUGCCCC	chr11:108811021-108811303(+)$1	282	203	231	22.2771
GGUCAGCAGGUAAUUUUUAGACUGUAGU	chr11:75590932-75591188(+)$1	256	143	171	24.8357
GCCGCCACCAUGCCCAAGAGAAAGGUAC	chr1:26799003-26799213(+)$1	210	91	119	23.5375
AAUAUUAACAAGUAACUCAUAAUUAAUU	chr1:193119334-193119599(+)$1	265	62	90	24.5585
CAGAGCCGCUAUACAAAAGAGAGUGCCU	chr2:71576241-71576555(+)$1	314	236	264	22.6134
CAGCUUACAACCUUAAAAUACUUGUUAC	chr2:39570454-39570693(-)$1	239	15	43	22.8182
GGGGCAAAUGUGAAUGUGAAAGAUUUUG	chr18:9211666-9211884(+)$1	218	85	113	21.6700
GCAUCUCCUCCUUCAGCUACCGGGAGAU	chrX:48834732-48834942(-)$1	210	161	189	23.4430
UUAGCAGUAAACACACCCAAAGAUGCUG	chr16:23570868-23571103(+)$1	235	45	73	23.2949
GCCGCGGAAAAUAAGCUACACCCAGCAU	chr16:89347814-89348080(-)$1	266	117	145	22.0747
UGUGAUGGUGAUGAUGAUGAAAGCAGUA	chr7:158694966-158695177(+)$1	211	124	152	23.8865
UUAGGAAGUGAAGUUCAGGAUGCUUCUA	chr10:105762721-105763003(+)$1	282	207	235	23.0982
UGCGUGGACAAACUCACCAAGGUCUACA	chr9:139910779-139911017(-)$1	238	144	172	24.5148
UUCCUCAGGUAAAGUGAUAAUCUUGGUG	chr19:52587939-52588214(-)$1	275	167	195	25.1117
CAAGGAUGCAAACUUAACUCAGCACACA	chr19:18965324-18965574(+)$1	250	56	84	21.3931
AGCCGAAGCUACUCUUAAACUGCUACAA	chr2:99980703-99980984(+)$1	281	146	174	24.7952
CCAGAUUGCGGAAUCCAGAUAGCAAACU	chr17:65888038-65888249(+)$1	211	11	39	21.5746
CAAAUAUUGGACAGAAGACAUCAAUGAA	chr7:91708337-91708606(+)$1	269	200	228	25.3689
GAACACCCUGAAGAACAUAGAGAAGGAG	chr11:64536960-64537181(-)$1	221	103	131	22.8841
UCUCUGCCAGUCGGUUCAGUAGGUGGUU	chr22:31851801-31852072(-)$1	271	130	158	25.7097
UUUAUUUAAUUAGAUAUAUUAUAAAUAG	chr17:59934445-59934694(-)$1	249	56	84	25.2339
UCUUGCUGUGGUUUUGUUUGAAACAGCA	chr12:104340498-104340731(+)$1	233	94	122	23.5441
UUUUUGAAGAAAUCAAGGUAAUCCUUUA	chr5:137278721-137278937(-)$1	216	99	127	24.1278
GCAGAGCACCGAACCCCAGAUGUGCUCA	chr11:63965289-63965536(+)$1	247	115	143	23.1049
UUUCUAGGCAAGAGGAGGAACGACGUAG	chr1:35653564-35653792(-)$1	228	94	122	24.3113
CCCGGGACCACAGCACGGAAACGGUCCG	chr20:57226237-57226541(+)$1	304	57	85	25.1349
AGUAAGGAAAUAACAUAAUUCUUCAUGG	chr8:38874737-38875035(+)$1	298	195	223	24.8476
GCGUGAGUGACAGAUUUUUAAACUCAGG	chr1:46826362-46826601(+)$1	239	136	164	24.6496
UCCUGAGGGACAUGCCAGACCCCCUUCU	chrX:11197415-11197671(-)$1	256	184	212	24.5421
UGAAAUCGUAAUUGGUGGACAGAACAUC	chrX:108906356-108906639(-)$1	283	45	73	22.5862
GACUUUAUGCAAAAACAAAGAAAUAGAA	chr15:40943609-40943848(+)$1	239	108	136	25.1194
GCAGUGAAACUUAAAUUACACUUUAUUG	chr3:142761901-142762209(+)$1	308	226	254	24.8140
CUCUUCCCACCCAGAAACCAAGUGAGAA	chr11:118919352-118919616(-)$1	264	4	32	22.4720
AAGUUGUGGAAGCCAUGAAGACACUGCU	chr5:137520446-137520676(+)$1	230	59	87	24.8912
UCUUCAACAAAAGAAGAGAAGGGAGAAG	chr17:38318030-38318264(+)$1	234	50	78	23.5438
UAGGGCCAGUGCUUUCAUUUCCUGACUC	chr19:10286154-10286392(-)$1	238	178	206	23.6429
GCCUGUCUGAUUCUCACAACCCAGCGUG	chr1:11315987-11316252(-)$1	265	141	169	23.7904
GGGCGUCACAUACAGCAGCCUUGACAAA	chr1:100584505-100584751(-)$1	246	104	132	25.2997
GCAUCAGGAACACAAGUAACACCUCAGA	chr12:122992770-122992989(-)$1	219	39	67	24.2887
UUCUGCUUUCCUAGAACUGAAGAAAGAA	chr1:24975295-24975567(+)$1	272	179	207	22.7514
GGAGCUGCUAGUCAGUUUAUUGCAGCGA	chr15:43067341-43067677(-)$1	336	270	298	25.7657
AAAUGUGGAACAAAAGAAAAGACAGUUG	chr10:32311066-32311285(-)$1	219	138	166	20.0478
GCCUGGUGAAGAAUGUGAUGGGAUCACU	chr19:15383754-15384042(-)$1	288	101	129	22.9479
uuuuaaauauuuuaauuuuuuuGUUUAC	chr6:108202296-108202552(-)$1	256	67	95	24.0507
CCCAUUACUUGUAGCCAAAUAAAGUGAU	chr2:45832449-45832680(-)$1	231	28	56	23.0012
CCAGGACAUAAGUGGAAAGAAGUCCGGC	chr20:39729778-39729996(+)$1	218	95	123	22.6488
CGGUUGAGGGUUAUUUAUUUAUUUUAGC	chr15:93543703-93543950(+)$1	247	183	211	21.7800

#DB
(.(((((((..............)))))	chr5:34953930-34954169(+)$1	1	152	180	23.8556
(..(((((..............))))).	chr15:40943567-40943809(+)$1	1	150	178	25.1194
(((.(..((............))...).	chr12:56510477-56510680(+)$1	1	143	171	24.0314
((..(((((............)))))))	chr1:94341102-94341371(-)$1	1	176	204	24.8193
(((((.((((............))))..	chr14:78082843-78083106(-)$1	1	106	134	22.3450
((((((((..............))))))	chr7:151877735-151877971(-)$1	1	28	56	22.2813
(..(((...............))).)))	chr12:132464139-132464381(+)$1	1	130	158	19.7095
((((.(((((...........))))).)	chr2:233599800-233600043(+)$1	1	172	200	22.8882
((..(((((............)))))..	chr15:77450769-77451133(-)$1	1	293	321	25.2958
(.((..(((............)))..))	chr4:123096908-123097165(+)$1	1	121	149	23.8963
((((((((.............)))))))	chr21:38559282-38559546(+)$1	1	212	240	24.7955
.(((.((((............)))))))	chr18:265415-265631(-)$1	1	114	142	23.4755
((((((((((...........)))))))	chr1:16958681-16958928(-)$1	1	40	68	23.2447
(...((((..............))))..	chr20:47592589-47592836(+)$1	1	158	186	24.1844
)))((((((.............))))))	chr11:108811021-108811303(+)$1	1	203	231	22.2771
((...((((............))))...	chr11:75590932-75591188(+)$1	1	143	171	24.8357
(((((.(((..............)))..	chr1:26799003-26799213(+)$1	1	91	119	23.5375
((.(((((..............))))).	chr1:193119334-193119599(+)$1	1	62	90	24.5585
(.(((.((((...........)))).))	chr2:71576241-71576555(+)$1	1	236	264	22.6134
.((...((((...........))))...	chr2:39570454-39570693(-)$1	1	15	43	22.8182
...(((((................))))	chr18:9211666-9211884(+)$1	1	85	113	21.6700
))(((((((............)))))))	chrX:48834732-48834942(-)$1	1	161	189	23.4430
...((((((..............)))))	chr16:23570868-23571103(+)$1	1	45	73	23.2949
(..((((..............)).))..	chr16:89347814-89348080(-)$1	1	117	145	22.0747
(((..((.(............).))...	chr7:158694966-158695177(+)$1	1	124	152	23.8865
((((.((((............)))))))	chr10:105762721-105763003(+)$1	1	207	235	23.0982
(..((((((............)))))).	chr9:139910779-139911017(-)$1	1	144	172	24.5148
)((((((((............))))).)	chr19:52587939-52588214(-)$1	1	167	195	25.1117
...(..(((............)))..).	chr19:18965324-18965574(+)$1	1	56	84	21.3931
(((...(((............)))....	chr2:99980703-99980984(+)$1	1	146	174	24.7952
((((.((((............)))).))	chr17:65888038-65888249(+)$1	1	11	39	21.5746
((..(((((............)))))..	chr7:91708337-91708606(+)$1	1	200	228	25.3689
)).((((((..............))).)	chr11:64536960-64537181(-)$1	1	103	131	22.8841
...(((((.............)))))..	chr22:31851801-31852072(-)$1	1	130	158	25.7097
((((((((.............)))))))	chr17:59934445-59934694(-)$1	1	56	84	25.2339
))))(((((.............))))).	chr12:104340498-104340731(+)$1	1	94	122	23.5441
(((((((((..............)))))	chr5:137278721-137278937(-)$1	1	99	127	24.1278
(((((((((............)))))).	chr11:63965289-63965536(+)$1	1	115	143	23.1049
)(((((.((............).).)))	chr1:35653564-35653792(-)$1	1	94	122	24.3113
(((.(((((.............))))).	chr20:57226237-57226541(+)$1	1	57	85	25.1349
(((...(((............)))...)	chr8:38874737-38875035(+)$1	1	195	223	24.8476
.(.(((((.............))))).)	chr1:46826362-46826601(+)$1	1	136	164	24.6496
....(((((............)))))))	chrX:11197415-11197671(-)$1	1	184	212	24.5421
((...((..............)).))))	chrX:108906356-108906639(-)$1	1	45	73	22.5862
(..(((((..............))))).	chr15:40943609-40943848(+)$1	1	108	136	25.1194
)(((((((.............)))))))	chr3:142761901-142762209(+)$1	1	226	254	24.8140
(.((((.(((...........))).)))	chr11:118919352-118919616(-)$1	1	4	32	22.4720
((((.(((.............))).)))	chr5:137520446-137520676(+)$1	1	59	87	24.8912
(((((..(.............)..))))	chr17:38318030-38318264(+)$1	1	50	78	23.5438
(((((.(((............))).)))	chr19:10286154-10286392(-)$1	1	178	206	23.6429
(((((.(((............))))).)	chr1:11315987-11316252(-)$1	1	141	169	23.7904
(...((((.............))))...	chr1:100584505-100584751(-)$1	1	104	132	25.2997
((((((((.............)))..))	chr12:122992770-122992989(-)$1	1	39	67	24.2887
((((.(((((...........))))).)	chr1:24975295-24975567(+)$1	1	179	207	22.7514
(..(((((.............)))))..	chr15:43067341-43067677(-)$1	1	270	298	25.7657
(..(((...............))).)))	chr10:32311066-32311285(-)$1	1	138	166	20.0478
((.((((((..............)))))	chr19:15383754-15384042(-)$1	1	101	129	22.9479
...((((((............)))))))	chr6:108202296-108202552(-)$1	1	67	95	24.0507
...(((((((...........)))))))	chr2:45832449-45832680(-)$1	1	28	56	23.0012
((.((((..............)))))).	chr20:39729778-39729996(+)$1	1	95	123	22.6488
.((((((((............)))))))	chr15:93543703-93543950(+)$1	1	183	211	21.7800

#PSSM
d : 0.16	f : 0.11	c : 0.09	b : 0.08	h : 0.06	g : 0.06	a : 0.04	e : 0.04	: : 0.04	= : 0.04	" : 0.04	# : 0.04	G : 0.03	i : 0.01	H : 0.01	E : 0.01	$ : 0.01	! : 0.01	
d : 0.13	! : 0.11	c : 0.08	h : 0.08	[ : 0.06	e : 0.06	b : 0.06	" : 0.06	f : 0.06	= : 0.04	# : 0.04	G : 0.03	g : 0.03	i : 0.01	H : 0.01	: : 0.01	E : 0.01	a : 0.01	$ : 0.01	
! : 0.16	c : 0.11	" : 0.09	d : 0.08	e : 0.06	[ : 0.06	h : 0.06	g : 0.04	f : 0.04	b : 0.04	= : 0.04	# : 0.04	: : 0.03	i : 0.01	G : 0.01	$ : 0.01	a : 0.01	
e : 0.18	f : 0.13	c : 0.13	" : 0.11	g : 0.06	! : 0.06	d : 0.06	b : 0.06	= : 0.04	h : 0.04	[ : 0.03	i : 0.01	a : 0.01	$ : 0.01	
e : 0.26	f : 0.13	[ : 0.09	d : 0.08	c : 0.08	" : 0.08	g : 0.06	! : 0.04	= : 0.04	b : 0.03	h : 0.03	a : 0.01	i : 0.01	
e : 0.27	d : 0.13	f : 0.11	[ : 0.08	c : 0.08	g : 0.06	! : 0.06	= : 0.04	" : 0.04	b : 0.04	i : 0.01	h : 0.01	
e : 0.26	d : 0.16	c : 0.16	f : 0.11	g : 0.06	= : 0.04	b : 0.04	! : 0.03	x : 0.03	[ : 0.03	i : 0.01	h : 0.01	
e : 0.26	c : 0.18	d : 0.14	f : 0.11	g : 0.06	= : 0.04	w : 0.04	x : 0.03	a : 0.03	b : 0.01	i : 0.01	[ : 0.01	h : 0.01	
v : 0.16	e : 0.14	c : 0.14	w : 0.13	d : 0.11	f : 0.09	g : 0.04	x : 0.03	= : 0.03	a : 0.03	b : 0.01	y : 0.01	h : 0.01	
u : 0.37	w : 0.22	v : 0.21	d : 0.04	x : 0.03	e : 0.03	= : 0.01	y : 0.01	c : 0.01	g : 0.01	
u : 0.39	w : 0.22	v : 0.21	t : 0.11	x : 0.03	y : 0.01	
u : 0.39	w : 0.22	v : 0.21	t : 0.11	x : 0.03	y : 0.01	
u : 0.39	w : 0.22	v : 0.21	t : 0.11	x : 0.03	y : 0.01	
u : 0.39	w : 0.22	v : 0.21	t : 0.11	x : 0.03	y : 0.01	
u : 0.39	w : 0.22	v : 0.21	t : 0.11	x : 0.03	y : 0.01	
u : 0.39	w : 0.22	v : 0.21	t : 0.11	x : 0.03	y : 0.01	
u : 0.39	w : 0.22	v : 0.21	t : 0.11	x : 0.03	y : 0.01	
u : 0.39	w : 0.22	v : 0.21	t : 0.11	x : 0.03	y : 0.01	
u : 0.39	w : 0.22	v : 0.21	t : 0.11	x : 0.03	y : 0.01	
u : 0.39	w : 0.22	v : 0.21	t : 0.11	x : 0.03	y : 0.01	
u : 0.39	w : 0.22	v : 0.21	t : 0.11	x : 0.03	y : 0.01	
w : 0.18	c : 0.18	e : 0.16	d : 0.13	b : 0.04	v : 0.04	g : 0.04	a : 0.04	f : 0.04	= : 0.03	u : 0.01	i : 0.01	y : 0.01	h : 0.01	
e : 0.24	c : 0.18	d : 0.16	w : 0.09	f : 0.08	b : 0.04	g : 0.04	= : 0.03	] : 0.03	i : 0.01	y : 0.01	2 : 0.01	h : 0.01	
e : 0.24	c : 0.21	d : 0.16	f : 0.11	g : 0.06	= : 0.04	] : 0.03	3 : 0.01	i : 0.01	y : 0.01	b : 0.01	a : 0.01	2 : 0.01	h : 0.01	
e : 0.26	d : 0.16	f : 0.14	] : 0.09	g : 0.06	2 : 0.04	= : 0.04	b : 0.04	3 : 0.03	c : 0.03	i : 0.01	4 : 0.01	h : 0.01	
e : 0.27	f : 0.16	3 : 0.09	g : 0.08	c : 0.06	d : 0.04	2 : 0.04	= : 0.04	b : 0.04	h : 0.04	] : 0.03	i : 0.01	4 : 0.01	
f : 0.16	e : 0.11	2 : 0.11	] : 0.09	g : 0.08	c : 0.08	3 : 0.08	b : 0.04	= : 0.04	h : 0.04	a : 0.03	d : 0.03	4 : 0.03	i : 0.01	
2 : 0.13	f : 0.11	c : 0.11	] : 0.09	g : 0.08	d : 0.08	3 : 0.06	e : 0.04	= : 0.04	h : 0.04	b : 0.03	: : 0.03	4 : 0.03	a : 0.03	i : 0.01	6 : 0.01	

#score	1442.342827047241
#seq	61
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_transcript_m3_run1.txt

#BEAR
fffffuuuuuuuuuuuuffffff	chr2:170873907-170874188(+)$1	281	101	124	23.2634
ffffvvvvvvvvvvvvvffffff	chr16:72921620-72921826(-)$1	206	139	162	22.9906
gg[ccctttttttttttccc]gg	chr6:128355781-128356102(-)$1	321	270	293	22.7498
:ddddwwwwwwwwwwwwwwdddd	chr21:46899036-46899249(+)$1	213	182	205	19.5908
ddyyyyyyyyyyyyyyyydddd]	chr7:22163879-22164159(-)$1	280	190	213	20.3593
ffyyyyyyyyyyyyyyyyfffff	chr2:236988148-236988424(+)$1	276	243	266	20.9987
ffffvvvvvvvvvvvvvffffff	chr16:72921601-72921813(-)$1	212	126	149	22.9906
eeeeevvvvvvvvvvvvveeeee	chr20:33069819-33070081(+)$1	262	173	196	23.1164
=====uuuuuuuuuuuu======	chr3:49147276-49147577(-)$1	301	23	46	23.3833
cc[ccctttttttttttccc333	chr9:127394244-127394520(-)$1	276	141	164	22.5464
eeeewwwwwwwwwwwwwweeeee	chr3:137923585-137923882(+)$1	297	197	220	22.1673
!!bbvvvvvvvvvvvvvbb22hh	chr22:47399403-47399638(+)$1	235	47	70	21.3127
fffffuuuuuuuuuuuuffffff	chr6:88305334-88305625(+)$1	291	165	188	23.2634
!!ddddtttttttttttdddd22	chr10:1153754-1154078(+)$1	324	39	62	21.4253
======ttttttttttt======	chr11:72736824-72737236(-)$1	412	276	299	22.3861
ggyyyyyyyyyyyyyyyyggggg	chr2:238485537-238485797(-)$1	260	88	111	20.9837
ee[bbuuuuuuuuuuuubbeeee	chr5:150486182-150486414(-)$1	232	21	44	22.7605
eeeeevvvvvvvvvvvvveeeee	chr11:72612501-72612785(-)$1	284	177	200	23.1164
ddddvvvvvvvvvvvvvdddddd	chr14:34912613-34912881(-)$1	268	182	205	21.9245
&dddduuuuuuuuuuuudddd55	chr2:11688272-11688511(+)$1	239	172	195	20.3609
gg[bbvvvvvvvvvvvvvbb]gg	chr2:32803759-32804047(+)$1	288	171	194	22.0473
!ddddtttttttttttdddd22e	chr3:16347776-16348068(+)$1	292	168	191	20.9734
!!ccctttttttttttccc22dd	chr22:47399478-47399765(+)$1	287	215	238	21.6204
$$cccuuuuuuuuuuuuccc22d	chr13:113766387-113766621(+)$1	234	48	71	22.4881
fffffftttttttttttffffff	chr2:9565779-9566165(+)$1	386	337	360	22.3128
ddd[auuuuuuuuuuuuaddddc	chr10:35715107-35715346(+)$1	239	137	160	22.7529
[ddddvvvvvvvvvvvvvddddb	chr7:157632965-157633187(-)$1	222	144	167	22.1187
eeeeeuuuuuuuuuuuueeeee]	chr6:170167792-170168081(+)$1	289	93	116	23.6160
eeeeettttttttttteeeeecc	chr18:2943250-2943555(-)$1	305	172	195	21.9629
[ddddvvvvvvvvvvvvvdddd]	chr2:39688175-39688481(+)$1	306	176	199	22.4249
fffffftttttttttttffffff	chr12:11273183-11273450(-)$1	267	87	110	22.3128
iiiiiitttttttttttiiiiii	chr3:136386107-136386454(-)$1	347	213	236	21.8321
cccwwwwwwwwwwwwwwccc]ff	chr7:78928437-78928728(-)$1	291	210	233	21.6312
:cccbbtttttttttttbb]ccc	chr1:44935132-44935412(+)$1	280	61	84	20.4707
[cccwwwwwwwwwwwwwwccc]b	chr2:70215522-70215852(-)$1	330	253	276	21.7022
[cccyyyyyyyyyyyyyyyyccc	chr10:102701037-102701364(+)$1	327	34	57	20.4451
""cccvvvvvvvvvvvvvcccdd	chr9:96220290-96220560(+)$1	270	129	152	22.6158
fffffftttttttttttffffff	chr11:82803418-82803727(+)$1	309	246	269	22.3128
[bbwwwwwwwwwwwwwwbbeeee	chr4:74056892-74057155(-)$1	263	6	29	20.9165
eeeeeuuuuuuuuuuuueeeee:	chr7:158348632-158348947(-)$1	315	115	138	22.6346
fffffuuuuuuuuuuuuffffff	chr2:53957368-53957732(-)$1	364	292	315	23.2634
#dddduuuuuuuuuuuuddddgg	chr1:2209136-2209425(+)$1	289	260	283	22.7046
:eeeeettttttttttteeeee:	chr13:111288632-111288886(+)$1	254	82	105	20.7366
fffwwwwwwwwwwwwwwffffff	chr9:71798082-71798400(+)$1	318	293	316	21.6396
ffffvvvvvvvvvvvvvffffff	chr18:36980182-36980478(-)$1	296	218	241	22.9906
""cccuuuuuuuuuuuuccc]dd	chr9:99340348-99340672(-)$1	324	149	172	23.2557
eeeewwwwwwwwwwwwwweeeee	chr6:128447833-128448149(-)$1	316	177	200	22.1673
ffffvvvvvvvvvvvvvffffff	chr6:128460010-128460372(-)$1	362	232	255	22.9906
[ddddvvvvvvvvvvvvvdddd=	chr13:97953001-97953251(+)$1	250	26	49	22.3930
eeeewwwwwwwwwwwwwweeeee	chr13:113539326-113539562(+)$1	236	176	199	22.1673
:eeeeettttttttttteeeee:	chr11:2152664-2152870(-)$1	206	109	132	20.7366
#eeeeettttttttttteeeee4	chr1:23748507-23748734(-)$1	227	99	122	22.6694
eeeeevvvvvvvvvvvvveeeee	chr10:89679209-89679475(+)$1	266	124	147	23.1164
ggggggtttttttttttgggggg	chr20:8262306-8262573(+)$1	267	23	46	22.1686
fffffuuuuuuuuuuuuffffff	chr2:188404164-188404398(-)$1	234	7	30	23.2634
!eeeeettttttttttteeeee2	chr1:76073882-76074177(-)$1	295	70	93	22.5809
eeyyyyyyyyyyyyyyyyeeeee	chr7:189420-189705(-)$1	285	10	33	21.1613
eeeeeuuuuuuuuuuuueeeee4	chr6:136588711-136589015(-)$1	304	238	261	23.5308
ggggvvvvvvvvvvvvvgggggg	chr6:142749732-142750012(+)$1	280	174	197	22.9490
[eeeeettttttttttteeeee]	chr6:20613174-20613485(+)$1	311	264	287	22.8718
!cccvvvvvvvvvvvvvccc22=	chr21:46915513-46915741(+)$1	228	155	178	22.8113
eeyyyyyyyyyyyyyyyyeeeee	chr5:59395849-59396132(-)$1	283	219	242	21.1613
&&cccuuuuuuuuuuuuccc777	chr20:31960809-31961013(-)$1	204	14	37	20.2524
ff[bbtttttttttttbb22fff	chr19:10432544-10432804(-)$1	260	102	125	20.7062
ggggguuuuuuuuuuuugggggg	chr5:109135710-109135982(+)$1	272	131	154	23.2272
ggggggtttttttttttgggggg	chr4:141546541-141546894(-)$1	353	151	174	22.1686
fffffftttttttttttffffff	chr6:48032418-48032675(-)$1	257	8	31	22.3128
!!cccuuuuuuuuuuuuccc22c	chr2:201230803-201231136(+)$1	333	81	104	23.2118
eeeeeuuuuuuuuuuuueeeeeg	chr2:64159827-64160112(-)$1	285	192	215	23.5837
eeeeeuuuuuuuuuuuueeeee:	chr7:76189025-76189280(+)$1	255	72	95	22.6346
fffffuuuuuuuuuuuuffffff	chr2:226628-226915(-)$1	287	133	156	23.2634
cccwwwwwwwwwwwwwwccc]==	chr3:61128927-61129230(-)$1	303	177	200	21.6135
eeeeeuuuuuuuuuuuueeeee:	chr11:2153274-2153492(-)$1	218	42	65	22.6346
c[cccuuuuuuuuuuuuccc]cc	chr1:92774956-92775214(+)$1	258	62	85	23.3676
"""bbtttttttttttbb333dd	chr6:64251651-64251992(+)$1	341	125	148	20.7537
ffyyyyyyyyyyyyyyyyfffff	chr14:75526503-75526788(-)$1	285	5	28	20.9987
ffffvvvvvvvvvvvvvffffff	chr2:101458124-101458354(+)$1	230	58	81	22.9906

#otherMatches

#Seq PSSM
GUAAUGCCUGGUAUAUAAUUACG	chr2:170873907-170874188(+)$1	281	101	124	23.2634
uacacacacacacccccuguaua	chr16:72921620-72921826(-)$1	206	139	162	22.9906
CUACUCCAUUCUCCAAAGAGAAG	chr6:128355781-128356102(-)$1	321	270	293	22.7498
accacacauuacaccacacgugg	chr21:46899036-46899249(+)$1	213	182	205	19.5908
UCAUAACAUCAUCACAGAGAUUC	chr7:22163879-22164159(-)$1	280	190	213	20.3593
GUGGUACAGACGGAGGGAACCCC	chr2:236988148-236988424(+)$1	276	243	266	20.9987
uacacacacacacccccuguaua	chr16:72921601-72921813(-)$1	212	126	149	22.9906
cagagccaaaccauaucauucug	chr20:33069819-33070081(+)$1	262	173	196	23.1164
GGGGAUAUAGCUUCCUCUCCUCC	chr3:49147276-49147577(-)$1	301	23	46	23.3833
caaagacacagaaucaaucuaaa	chr9:127394244-127394520(-)$1	276	141	164	22.5464
uaugauucucaauccuaacaugu	chr3:137923585-137923882(+)$1	297	197	220	22.1673
cacacccuacgcacacaugccug	chr22:47399403-47399638(+)$1	235	47	70	21.3127
CACACUCAUAUACCCAUGUGUGU	chr6:88305334-88305625(+)$1	291	165	188	23.2634
CCACUUCCCCUUCACCUAGGUUU	chr10:1153754-1154078(+)$1	324	39	62	21.4253
AGGUAUAUAUACCACACAUACCU	chr11:72736824-72737236(-)$1	412	276	299	22.3861
ugcacccacacacauuuacaagu	chr2:238485537-238485797(-)$1	260	88	111	20.9837
GGCUCAGUUUUUAGGAAGACUUG	chr5:150486182-150486414(-)$1	232	21	44	22.7605
auuucaucacuuuaaaaagaaau	chr11:72612501-72612785(-)$1	284	177	200	23.1164
caggagaaucgcuugaaccuggg	chr14:34912613-34912881(-)$1	268	182	205	21.9245
cgcacacacccagacacgugcac	chr2:11688272-11688511(+)$1	239	172	195	20.3609
CAAUAUUUCUGUCUCUAUUACUG	chr2:32803759-32804047(+)$1	288	171	194	22.0473
aucauaccuaacacaagugacaa	chr3:16347776-16348068(+)$1	292	168	191	20.9734
CCUGUACACACCCUacgcacaca	chr22:47399478-47399765(+)$1	287	215	238	21.6204
ACGGGGCACACUUCACACUCACA	chr13:113766387-113766621(+)$1	234	48	71	22.4881
agugugaucauacaauacauacu	chr2:9565779-9566165(+)$1	386	337	360	22.3128
CUGUGUUGUCCAGUUUUCCAGCU	chr10:35715107-35715346(+)$1	239	137	160	22.7529
acgcggccacacgucacacgcgg	chr7:157632965-157633187(-)$1	222	144	167	22.1187
ugcauauaaacacacaaauguac	chr6:170167792-170168081(+)$1	289	93	116	23.6160
UCCUUUCUUACUUCUUAAGGAGC	chr18:2943250-2943555(-)$1	305	172	195	21.9629
AGGAUGACAUCACAACAGAUCCA	chr2:39688175-39688481(+)$1	306	176	199	22.4249
AAAAAUAUAUACACAACAUUuuu	chr12:11273183-11273450(-)$1	267	87	110	22.3128
aucuuucuuuuuuguuaagagau	chr3:136386107-136386454(-)$1	347	213	236	21.8321
AGGUCUUCCAACAUCAUCCUAAA	chr7:78928437-78928728(-)$1	291	210	233	21.6312
CUGCCACUUAACACCACUGAGCA	chr1:44935132-44935412(+)$1	280	61	84	20.4707
uugacuacucuagacaccucaug	chr2:70215522-70215852(-)$1	330	253	276	21.7022
CAAUUCUUUUCUUGACCAUUAUU	chr10:102701037-102701364(+)$1	327	34	57	20.4451
ACUGACUCUUCACCUCUCUCAUC	chr9:96220290-96220560(+)$1	270	129	152	22.6158
cccagcacuauuggaaagcuggg	chr11:82803418-82803727(+)$1	309	246	269	22.3128
uaguuuuauuuauguuucuagua	chr4:74056892-74057155(-)$1	263	6	29	20.9165
ucuaucaucaucuaucAAUAGAA	chr7:158348632-158348947(-)$1	315	115	138	22.6346
AUACCUAAUUUGCUAAUGGUGUG	chr2:53957368-53957732(-)$1	364	292	315	23.2634
cgugcacgcacacaUCAGCACCC	chr1:2209136-2209425(+)$1	289	260	283	22.7046
cgcaugcaauucauacacaugca	chr13:111288632-111288886(+)$1	254	82	105	20.7366
cacucaaccuaaccucugugaaa	chr9:71798082-71798400(+)$1	318	293	316	21.6396
UGAUGACUUAUACACAAAUUACA	chr18:36980182-36980478(-)$1	296	218	241	22.9906
acucaaucacuuauuuaugacag	chr9:99340348-99340672(-)$1	324	149	172	23.2557
aucacauucuuaccuaauugauu	chr6:128447833-128448149(-)$1	316	177	200	22.1673
GUAUUCCUUAAUUGCCUAUACAC	chr6:128460010-128460372(-)$1	362	232	255	22.9906
AUUUGUAAAGAAGUCAACCAAAU	chr13:97953001-97953251(+)$1	250	26	49	22.3930
augcacauaUCAUGAACAGCGUA	chr13:113539326-113539562(+)$1	236	176	199	22.1673
cUCAUGCGCAGCACAUACAUGAA	chr11:2152664-2152870(-)$1	206	109	132	20.7366
UUUAUACAUUCAGAUCUUAUAAC	chr1:23748507-23748734(-)$1	227	99	122	22.6694
ucuuguaaacacaacaaccaaga	chr10:89679209-89679475(+)$1	266	124	147	23.1164
UACUUUUUUUUGGUUUUAAAGUA	chr20:8262306-8262573(+)$1	267	23	46	22.1686
UUUCAUCAAACUUUAUCUGAAGG	chr2:188404164-188404398(-)$1	234	7	30	23.2634
cuuuugcaauaacucUUUAAAAa	chr1:76073882-76074177(-)$1	295	70	93	22.5809
uacacacagacacgcauauauac	chr7:189420-189705(-)$1	285	10	33	21.1613
UCUUGCCUGUUUAAUUUCAAGAU	chr6:136588711-136589015(-)$1	304	238	261	23.5308
ucccuccguugacauuuggggau	chr6:142749732-142750012(+)$1	280	174	197	22.9490
UUUGGUUACCUUGUUUUAUCAGU	chr6:20613174-20613485(+)$1	311	264	287	22.8718
caugcccauacacuccacauagg	chr21:46915513-46915741(+)$1	228	155	178	22.8113
agcuuuuccucuuuuuucuuuca	chr5:59395849-59396132(-)$1	283	219	242	21.1613
cagucccuacacacacagacaca	chr20:31960809-31961013(-)$1	204	14	37	20.2524
cauacacCCAUGCUCCGUCCUGU	chr19:10432544-10432804(-)$1	260	102	125	20.7062
GUGCACACACACAGACAUGCACA	chr5:109135710-109135982(+)$1	272	131	154	23.2272
CAUAGUACACUUUCCUCACUGUG	chr4:141546541-141546894(-)$1	353	151	174	22.1686
UACACGAUUUCAAAAGCUGUGUA	chr6:48032418-48032675(-)$1	257	8	31	22.3128
CCAUAAAUCAACAAUCAUAUCUU	chr2:201230803-201231136(+)$1	333	81	104	23.2118
uagAACCAAUAAAAUAUUUCUGG	chr2:64159827-64160112(-)$1	285	192	215	23.5837
cagauucccaucaccacgucugc	chr7:76189025-76189280(+)$1	255	72	95	22.6346
UAUAUACACUCCCCACCAUAUAU	chr2:226628-226915(-)$1	287	133	156	23.2634
gcacucuaaauauuauaugcuau	chr3:61128927-61129230(-)$1	303	177	200	21.6135
GCAUGAAAACCAAAAUCCAUGCA	chr11:2153274-2153492(-)$1	218	42	65	22.6346
GUUUCUCUAAUCUAAAUGAAUCA	chr1:92774956-92775214(+)$1	258	62	85	23.3676
cuaugucauuuccauccagcuua	chr6:64251651-64251992(+)$1	341	125	148	20.7537
uuuuuaaauguacaauucagugg	chr14:75526503-75526788(-)$1	285	5	28	20.9987
gcauauacacguaccacaugcau	chr2:101458124-101458354(+)$1	230	58	81	22.9906

#DB
(((((............))))))	chr2:170873907-170874188(+)$1	1	101	124	23.2634
((((.............))))))	chr16:72921620-72921826(-)$1	1	139	162	22.9906
((.(((...........))).))	chr6:128355781-128356102(-)$1	1	270	293	22.7498
.((((..............))))	chr21:46899036-46899249(+)$1	1	182	205	19.5908
((................)))).	chr7:22163879-22164159(-)$1	1	190	213	20.3593
((................)))))	chr2:236988148-236988424(+)$1	1	243	266	20.9987
((((.............))))))	chr16:72921601-72921813(-)$1	1	126	149	22.9906
(((((.............)))))	chr20:33069819-33070081(+)$1	1	173	196	23.1164
(((((............))))))	chr3:49147276-49147577(-)$1	1	23	46	23.3833
((.(((...........)))...	chr9:127394244-127394520(-)$1	1	141	164	22.5464
((((..............)))))	chr3:137923585-137923882(+)$1	1	197	220	22.1673
..((.............))..))	chr22:47399403-47399638(+)$1	1	47	70	21.3127
(((((............))))))	chr6:88305334-88305625(+)$1	1	165	188	23.2634
..((((...........))))..	chr10:1153754-1154078(+)$1	1	39	62	21.4253
((((((...........))))))	chr11:72736824-72737236(-)$1	1	276	299	22.3861
((................)))))	chr2:238485537-238485797(-)$1	1	88	111	20.9837
((.((............))))))	chr5:150486182-150486414(-)$1	1	21	44	22.7605
(((((.............)))))	chr11:72612501-72612785(-)$1	1	177	200	23.1164
((((.............))))((	chr14:34912613-34912881(-)$1	1	182	205	21.9245
.((((............))))..	chr2:11688272-11688511(+)$1	1	172	195	20.3609
((.((.............)).))	chr2:32803759-32804047(+)$1	1	171	194	22.0473
.((((...........))))..)	chr3:16347776-16348068(+)$1	1	168	191	20.9734
..(((...........)))..))	chr22:47399478-47399765(+)$1	1	215	238	21.6204
..(((............)))..)	chr13:113766387-113766621(+)$1	1	48	71	22.4881
((((((...........))))))	chr2:9565779-9566165(+)$1	1	337	360	22.3128
(((.(............))))))	chr10:35715107-35715346(+)$1	1	137	160	22.7529
.((((.............)))))	chr7:157632965-157633187(-)$1	1	144	167	22.1187
(((((............))))).	chr6:170167792-170168081(+)$1	1	93	116	23.6160
(((((...........)))))))	chr18:2943250-2943555(-)$1	1	172	195	21.9629
.((((.............)))).	chr2:39688175-39688481(+)$1	1	176	199	22.4249
((((((...........))))))	chr12:11273183-11273450(-)$1	1	87	110	22.3128
((((((...........))))))	chr3:136386107-136386454(-)$1	1	213	236	21.8321
(((..............))).))	chr7:78928437-78928728(-)$1	1	210	233	21.6312
.(((((...........)).)))	chr1:44935132-44935412(+)$1	1	61	84	20.4707
.(((..............))).)	chr2:70215522-70215852(-)$1	1	253	276	21.7022
.(((................)))	chr10:102701037-102701364(+)$1	1	34	57	20.4451
..(((.............)))))	chr9:96220290-96220560(+)$1	1	129	152	22.6158
((((((...........))))))	chr11:82803418-82803727(+)$1	1	246	269	22.3128
.((..............))))))	chr4:74056892-74057155(-)$1	1	6	29	20.9165
(((((............))))).	chr7:158348632-158348947(-)$1	1	115	138	22.6346
(((((............))))))	chr2:53957368-53957732(-)$1	1	292	315	23.2634
.((((............))))))	chr1:2209136-2209425(+)$1	1	260	283	22.7046
.(((((...........))))).	chr13:111288632-111288886(+)$1	1	82	105	20.7366
(((..............))))))	chr9:71798082-71798400(+)$1	1	293	316	21.6396
((((.............))))))	chr18:36980182-36980478(-)$1	1	218	241	22.9906
..(((............))).))	chr9:99340348-99340672(-)$1	1	149	172	23.2557
((((..............)))))	chr6:128447833-128448149(-)$1	1	177	200	22.1673
((((.............))))))	chr6:128460010-128460372(-)$1	1	232	255	22.9906
.((((.............)))))	chr13:97953001-97953251(+)$1	1	26	49	22.3930
((((..............)))))	chr13:113539326-113539562(+)$1	1	176	199	22.1673
.(((((...........))))).	chr11:2152664-2152870(-)$1	1	109	132	20.7366
.(((((...........))))).	chr1:23748507-23748734(-)$1	1	99	122	22.6694
(((((.............)))))	chr10:89679209-89679475(+)$1	1	124	147	23.1164
((((((...........))))))	chr20:8262306-8262573(+)$1	1	23	46	22.1686
(((((............))))))	chr2:188404164-188404398(-)$1	1	7	30	23.2634
.(((((...........))))).	chr1:76073882-76074177(-)$1	1	70	93	22.5809
((................)))))	chr7:189420-189705(-)$1	1	10	33	21.1613
(((((............))))).	chr6:136588711-136589015(-)$1	1	238	261	23.5308
((((.............))))))	chr6:142749732-142750012(+)$1	1	174	197	22.9490
.(((((...........))))).	chr6:20613174-20613485(+)$1	1	264	287	22.8718
.(((.............)))..)	chr21:46915513-46915741(+)$1	1	155	178	22.8113
((................)))))	chr5:59395849-59396132(-)$1	1	219	242	21.1613
..(((............)))...	chr20:31960809-31961013(-)$1	1	14	37	20.2524
((.((...........))..)))	chr19:10432544-10432804(-)$1	1	102	125	20.7062
(((((............))))))	chr5:109135710-109135982(+)$1	1	131	154	23.2272
((((((...........))))))	chr4:141546541-141546894(-)$1	1	151	174	22.1686
((((((...........))))))	chr6:48032418-48032675(-)$1	1	8	31	22.3128
..(((............)))..)	chr2:201230803-201231136(+)$1	1	81	104	23.2118
(((((............)))))(	chr2:64159827-64160112(-)$1	1	192	215	23.5837
(((((............))))).	chr7:76189025-76189280(+)$1	1	72	95	22.6346
(((((............))))))	chr2:226628-226915(-)$1	1	133	156	23.2634
(((..............))).))	chr3:61128927-61129230(-)$1	1	177	200	21.6135
(((((............))))).	chr11:2153274-2153492(-)$1	1	42	65	22.6346
(.(((............))).))	chr1:92774956-92775214(+)$1	1	62	85	23.3676
...((...........))...))	chr6:64251651-64251992(+)$1	1	125	148	20.7537
((................)))))	chr14:75526503-75526788(-)$1	1	5	28	20.9987
((((.............))))))	chr2:101458124-101458354(+)$1	1	58	81	22.9906

#PSSM
f : 0.23	e : 0.20	g : 0.09	! : 0.09	[ : 0.09	: : 0.05	c : 0.05	d : 0.03	" : 0.03	= : 0.02	& : 0.02	# : 0.02	$ : 0.01	i : 0.01	
e : 0.27	f : 0.23	d : 0.12	g : 0.09	c : 0.09	! : 0.05	" : 0.03	= : 0.02	$ : 0.01	i : 0.01	b : 0.01	& : 0.01	[ : 0.01	
e : 0.23	f : 0.19	c : 0.16	d : 0.12	y : 0.07	[ : 0.06	g : 0.05	= : 0.02	b : 0.02	i : 0.01	" : 0.01	
e : 0.23	f : 0.18	c : 0.16	d : 0.11	y : 0.07	b : 0.06	w : 0.05	g : 0.05	= : 0.02	[ : 0.01	i : 0.01	
e : 0.19	f : 0.11	v : 0.11	c : 0.11	d : 0.10	w : 0.10	y : 0.09	b : 0.06	g : 0.03	= : 0.02	a : 0.01	i : 0.01	
u : 0.28	v : 0.22	w : 0.11	y : 0.09	t : 0.06	e : 0.06	f : 0.05	c : 0.02	g : 0.02	d : 0.01	= : 0.01	i : 0.01	b : 0.01	
u : 0.28	t : 0.28	v : 0.22	w : 0.11	y : 0.09	
u : 0.28	t : 0.28	v : 0.22	w : 0.11	y : 0.09	
u : 0.28	t : 0.28	v : 0.22	w : 0.11	y : 0.09	
u : 0.28	t : 0.28	v : 0.22	w : 0.11	y : 0.09	
u : 0.28	t : 0.28	v : 0.22	w : 0.11	y : 0.09	
u : 0.28	t : 0.28	v : 0.22	w : 0.11	y : 0.09	
u : 0.28	t : 0.28	v : 0.22	w : 0.11	y : 0.09	
u : 0.28	t : 0.28	v : 0.22	w : 0.11	y : 0.09	
u : 0.28	t : 0.28	v : 0.22	w : 0.11	y : 0.09	
u : 0.28	t : 0.28	v : 0.22	w : 0.11	y : 0.09	
u : 0.28	v : 0.22	t : 0.22	w : 0.11	y : 0.09	b : 0.02	d : 0.01	c : 0.01	e : 0.01	
f : 0.19	e : 0.15	c : 0.14	v : 0.10	y : 0.09	b : 0.07	w : 0.06	d : 0.06	g : 0.05	= : 0.02	a : 0.01	i : 0.01	
e : 0.25	f : 0.22	c : 0.16	d : 0.12	b : 0.06	g : 0.06	= : 0.02	w : 0.01	i : 0.01	y : 0.01	2 : 0.01	3 : 0.01	
e : 0.28	f : 0.22	c : 0.15	d : 0.14	g : 0.06	2 : 0.03	= : 0.02	b : 0.01	i : 0.01	] : 0.01	y : 0.01	3 : 0.01	
e : 0.28	f : 0.23	d : 0.12	] : 0.07	2 : 0.07	g : 0.06	c : 0.05	= : 0.02	3 : 0.02	i : 0.01	7 : 0.01	
e : 0.27	f : 0.24	d : 0.14	g : 0.10	2 : 0.06	c : 0.05	= : 0.03	3 : 0.01	h : 0.01	5 : 0.01	i : 0.01	] : 0.01	7 : 0.01	
f : 0.24	e : 0.14	g : 0.11	d : 0.09	c : 0.07	= : 0.06	: : 0.06	] : 0.05	2 : 0.02	b : 0.02	4 : 0.02	3 : 0.01	h : 0.01	5 : 0.01	i : 0.01	7 : 0.01	

#score	1707.9337160695675
#seq	77
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_CDS_m2_run1.txt

#BEAR
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:3632-3876(+)$1	244	112	149	31.3620
ffffff!!ffffff####a!!bb####eeeeea[eee	chrM:14241-14447(-)$1	206	40	77	23.8935
ffffff!!ffffff####a!!bb####eeeeea[eee	chrM:14247-14449(-)$1	202	42	79	23.8935
hhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhh	chr15:38776586-38776855(+)$1	269	149	186	25.7547
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:3519-3749(+)$1	230	85	122	31.1074
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:3459-3706(+)$1	247	145	182	31.1074
ffffff[bbbb[bb"""ccc[a[a[bb[ccc[ggggg	chr6:31599470-31599722(+)$1	252	156	193	15.3023
ffffff!!ffffff####a!!bb####eeeeea[eee	chrM:14270-14498(-)$1	228	91	128	23.8935
ffffff!!ffffff####a!!bb####eeeeea[eee	chrM:14249-14466(-)$1	217	59	96	23.8935
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:3676-3910(+)$1	234	68	105	31.3620

#otherMatches

#Seq PSSM
AGCCAUCAUUCUACUAUCAACAUUACUAAUAAGUGGC	chrM:3632-3876(+)$1	244	112	149	31.3620
GUGAGUGUUUUAGUGGGGUUAGCGAUGGAGGUAGGAU	chrM:14241-14447(-)$1	206	40	77	23.8935
GUGAGUGUUUUAGUGGGGUUAGCGAUGGAGGUAGGAU	chrM:14247-14449(-)$1	202	42	79	23.8935
AUGGUGGAAGAGGGGGUUAUGGUGGAAGAGGGGGCUA	chr15:38776586-38776855(+)$1	269	149	186	25.7547
CUAGGCCUCCUAUUUAUUCUAGCCACCUCUAGCCUAG	chrM:3519-3749(+)$1	230	85	122	31.1074
CUAGGCCUCCUAUUUAUUCUAGCCACCUCUAGCCUAG	chrM:3459-3706(+)$1	247	145	182	31.1074
GUUUCGAGGAGAUGAUGGGCGUGGAGGUGGGACAGGG	chr6:31599470-31599722(+)$1	252	156	193	15.3023
GUGAGUGUUUUAGUGGGGUUAGCGAUGGAGGUAGGAU	chrM:14270-14498(-)$1	228	91	128	23.8935
GUGAGUGUUUUAGUGGGGUUAGCGAUGGAGGUAGGAU	chrM:14249-14466(-)$1	217	59	96	23.8935
AGCCAUCAUUCUACUAUCAACAUUACUAAUAAGUGGC	chrM:3676-3910(+)$1	234	68	105	31.3620

#DB
((((((..........................)))))	chrM:3632-3876(+)$1	1	112	149	31.3620
((((((..((((((....(..((....((((((.(((	chrM:14241-14447(-)$1	1	40	77	23.8935
((((((..((((((....(..((....((((((.(((	chrM:14247-14449(-)$1	1	42	79	23.8935
(((((............................))))	chr15:38776586-38776855(+)$1	1	149	186	25.7547
((((((.........................))))))	chrM:3519-3749(+)$1	1	85	122	31.1074
((((((.........................))))))	chrM:3459-3706(+)$1	1	145	182	31.1074
((((((.((((.((...(((.(.(.((.(((.(((((	chr6:31599470-31599722(+)$1	1	156	193	15.3023
((((((..((((((....(..((....((((((.(((	chrM:14270-14498(-)$1	1	91	128	23.8935
((((((..((((((....(..((....((((((.(((	chrM:14249-14466(-)$1	1	59	96	23.8935
((((((..........................)))))	chrM:3676-3910(+)$1	1	68	105	31.3620

#PSSM
f : 0.89	h : 0.10	
f : 0.89	h : 0.10	
f : 0.89	h : 0.10	
f : 0.89	h : 0.10	
f : 0.89	h : 0.10	
f : 0.89	^ : 0.10	
^ : 0.50	! : 0.40	[ : 0.10	
^ : 0.50	! : 0.40	b : 0.10	
^ : 0.50	f : 0.40	b : 0.10	
^ : 0.50	f : 0.40	b : 0.10	
^ : 0.50	f : 0.40	b : 0.10	
^ : 0.50	f : 0.40	[ : 0.10	
^ : 0.50	f : 0.40	b : 0.10	
^ : 0.50	f : 0.40	b : 0.10	
^ : 0.50	# : 0.40	" : 0.10	
^ : 0.50	# : 0.40	" : 0.10	
^ : 0.50	# : 0.40	" : 0.10	
^ : 0.50	# : 0.40	c : 0.10	
^ : 0.50	a : 0.40	c : 0.10	
^ : 0.50	! : 0.40	c : 0.10	
^ : 0.50	! : 0.40	[ : 0.10	
^ : 0.50	b : 0.40	a : 0.10	
^ : 0.50	b : 0.40	[ : 0.10	
^ : 0.50	# : 0.40	a : 0.10	
^ : 0.50	# : 0.40	[ : 0.10	
^ : 0.50	# : 0.40	b : 0.10	
^ : 0.50	# : 0.40	b : 0.10	
^ : 0.50	e : 0.40	[ : 0.10	
^ : 0.50	e : 0.40	c : 0.10	
^ : 0.50	e : 0.40	c : 0.10	
^ : 0.50	e : 0.40	c : 0.10	
e : 0.40	^ : 0.30	f : 0.20	[ : 0.10	
f : 0.40	a : 0.40	^ : 0.10	g : 0.10	
f : 0.40	[ : 0.40	h : 0.10	g : 0.10	
f : 0.40	e : 0.40	h : 0.10	g : 0.10	
f : 0.40	e : 0.40	h : 0.10	g : 0.10	
f : 0.40	e : 0.40	h : 0.10	g : 0.10	

#score	261.5704333334499
#seq	10
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_UTR_m3_run1.txt

#BEAR
dd$$$$$cccmmmmccc333dddd	chr8:117738153-117738378(-)$1	225	168	192	9.1990
ccc!!eeeeemmmmeeeee]ccc:	chr11:110101524-110101738(-)$1	214	57	81	9.0823
[eeeee[abbmmmmbb]a]eeeee	chr7:30536233-30536492(-)$1	259	100	124	10.0136
==========oooooo========	chr5:34907928-34908165(-)$1	237	158	182	9.3495
c"""ccc[ccclllcccccc]ccc	chr16:23504623-23504872(-)$1	249	209	233	8.0682
==========mmmm==========	chr14:50085376-50085665(-)$1	289	175	199	12.1670
"bb!!ccc[ammmma]cccbbeee	chr19:54710478-54710692(+)$1	214	112	136	9.0629
!cccccccccmmmmccc]ccc]cc	chr16:14530256-14530508(-)$1	252	158	182	10.3217
f==========lll==========	chr2:238007073-238007338(+)$1	265	183	207	10.0729
eee!!eeeeemmmmeeeee]eeee	chr9:91926051-91926283(+)$1	232	63	87	9.6649
!ccc[eeeeemmmmeeeee]ccc2	chr19:40953830-40954054(-)$1	224	53	77	9.8635
eee[ffffffmmmmffffff333e	chr9:116023084-116023331(+)$1	247	206	230	8.8543
ccc####cccmmmmccc333ccc:	chr2:106510024-106510333(+)$1	309	169	193	9.8213
e!!gggggggmmmmggggggg444	chr6:33243641-33243864(+)$1	223	104	128	10.6988
hh!!ccc[bbmmmmbb]ccc22hh	chr1:11083385-11083594(+)$1	209	49	73	9.8539
dddd[ccc[ammmma]ccc]dddd	chr15:35147978-35148226(-)$1	248	11	35	9.3126
!eeeee!!bbmmmmbb22eeeee2	chr8:124026741-124026973(-)$1	232	53	77	9.7493
ccc!!eeeeemmmmeeeeeccc]c	chr3:182631646-182631884(+)$1	238	148	172	9.8965
!!eeeeecccmmmmccc]eeeee]	chr1:207494985-207495254(+)$1	269	18	42	9.9823
dd[ccc!!bbmmmmbb]ccc]ddd	chr6:13658955-13659166(-)$1	211	123	147	10.3024
[ccc[bb[bbmmmmbb]bbccc]b	chr16:69681284-69681554(+)$1	270	14	38	9.4138
:iiiiiiiiimmmmiiiiiiiiiF	chr18:20877883-20878109(-)$1	226	183	207	9.9373
==========nnnnn=========	chrX:19373748-19373976(+)$1	228	193	217	8.8067
ddeeeee[bbmmmmbb]eeeee]d	chr7:158438114-158438360(-)$1	246	28	52	9.9076
fffff[ddddmmmmdddd]fffff	chr17:45015957-45016256(+)$1	299	235	259	8.2068
gggbb!!cccmmmmccc333bb]g	chr1:204525465-204525717(+)$1	252	217	241	9.7839
#ccc[eeeeemmmmeeeee]ccc4	chr11:130014234-130014498(+)$1	264	185	209	9.8892
$iiiiiiiiimmmmiiiiiiiii5	chr2:114674360-114674591(+)$1	231	45	69	10.5007
d!!gggggggmmmmggggggg22d	chr1:38326801-38327078(-)$1	277	161	185	10.3389
eeeee[ddddmmmmdddd]eeeee	chr8:91049017-91049269(+)$1	252	143	167	8.5655
hh!!ccc[bbmmmmbb]ccc22hh	chr1:11083368-11083584(+)$1	216	66	90	9.8539
!iiiiiiiiinnnnniiiiiiiii	chr1:54231495-54231782(-)$1	287	198	222	8.3332
ggggggg[bbmmmmbb]ggggggg	chr2:87003934-87004215(+)$1	281	141	165	11.1992
ffeeeee[bbmmmmbb333eeeee	chr22:19833603-19833870(-)$1	267	109	133	10.1565
!!ccc[a[bbmmmmbba]ccc22e	chr22:18074966-18075293(-)$1	327	79	103	10.3587
b####eeeeemmmmeeeeebb]dd	chr9:132897628-132897900(+)$1	272	103	127	8.6252
[ffffff!!ammmma22ffffffb	chr8:11688965-11689205(+)$1	240	4	28	8.5226
dd[ccc!!bbmmmmbbccc]dddd	chr2:219098973-219099216(+)$1	243	10	34	10.1691
[iiiiiiiiimmmmiiiiiiiii]	chr7:100733248-100733507(+)$1	259	191	215	11.6262
ddd!!eeeeemmmmeeeee]dddd	chr19:10229256-10229507(-)$1	251	216	240	9.2793
ddeeeeecccmmmmccc22eeeee	chr11:73114646-73114948(-)$1	302	216	240	9.2056
iiiiiii[bbmmmmbb]iiiiiii	chr7:133749262-133749545(+)$1	283	133	157	11.6566
Fiiiiiiiiinnnnniiiiiiiii	chr19:9273574-9273811(+)$1	237	109	133	7.6788
ffff####bbmmmmbb4444ffff	chr5:10258160-10258442(+)$1	282	85	109	9.6406
[==========lll==========	chr17:4175028-4175306(-)$1	278	104	128	10.3414
ff[gggggggmmmmggggggg]ff	chr15:76225103-76225376(+)$1	273	193	217	10.3707
fffff!!cccmmmmcccffffff2	chr17:79804204-79804447(-)$1	243	157	181	9.1814
ggggg[ddddmmmmddddgggggg	chr1:182856691-182856966(+)$1	275	109	133	9.6024
eeccceeeeemmmmeeeee22ccc	chr1:29443720-29443990(+)$1	270	123	147	8.9961
ggggg"""bbmmmmbb333ggggg	chr6:7289455-7289671(-)$1	216	160	184	11.2622
###gggggggmmmmggggggg333	chr22:22115421-22115666(-)$1	245	109	133	10.8113
ddd"""ddddmmmmdddd333ddd	chrX:48970331-48970555(-)$1	224	164	188	9.0300
cc[gggggggmmmmgggggggccc	chr16:75661574-75661823(-)$1	249	165	189	10.7231

#otherMatches

#Seq PSSM
GGAUAUUGACACAGGUCUCACCAU	chr8:117738153-117738378(-)$1	225	168	192	9.1990
CUGGACCUUUUCUGGAAGGGCAGC	chr11:110101524-110101738(-)$1	214	57	81	9.0823
CUCACUUGAUGAUGGUGCUGGUGA	chr7:30536233-30536492(-)$1	259	100	124	10.0136
UUAAAGGAAACUUUUUUUUUCUUU	chr5:34907928-34908165(-)$1	237	158	182	9.3495
GCUCUGCUGACUGUGUCGCACCUA	chr16:23504623-23504872(-)$1	249	209	233	8.0682
UUUUUCUUCAAUUUUGAAGAGAAA	chr14:50085376-50085665(-)$1	289	175	199	12.1670
AGGUAACAGCUCUUGGUGUCCCCA	chr19:54710478-54710692(+)$1	214	112	136	9.0629
AGGCUGUCAUGAAUGUGUACGUGC	chr16:14530256-14530508(-)$1	252	158	182	10.3217
uuguuguaacuuaagguuauaaca	chr2:238007073-238007338(+)$1	265	183	207	10.0729
UCUCCGGCGAGUUGUUGCCUGGGC	chr9:91926051-91926283(+)$1	232	63	87	9.6649
AGGGAAAGGUGUCUGCUUUAUCCA	chr19:40953830-40954054(-)$1	224	53	77	9.8635
agcacuuuggggggccaaggcagg	chr9:116023084-116023331(+)$1	247	206	230	8.8543
AGAAUUUCCUGGAAAGGCAGUCUG	chr2:106510024-106510333(+)$1	309	169	193	9.8213
AACGUGUGAUCACCAUUAUGCAGA	chr6:33243641-33243864(+)$1	223	104	128	10.6988
CAACGCUAUGAACGCAAGGCUGUG	chr1:11083385-11083594(+)$1	209	49	73	9.8539
CUGAGUCUGGGCAAUGAGAGUCAG	chr15:35147978-35148226(-)$1	248	11	35	9.3126
ACAUGGGUUAGGUUUAAACCAUGG	chr8:124026741-124026973(-)$1	232	53	77	9.7493
UCUAAGUAGCCUUUGCUGCAGAUG	chr3:182631646-182631884(+)$1	238	148	172	9.8965
UUGCGGAGCCACGAGGCUUCUGCU	chr1:207494985-207495254(+)$1	269	18	42	9.9823
UGCUCAAGGUGUGAACAUGAAUAG	chr6:13658955-13659166(-)$1	211	123	147	10.3024
UCCUACAAUGAUAACACUGAGGUA	chr16:69681284-69681554(+)$1	270	14	38	9.4138
AGCUUGUACACCUGUGUACGAGCC	chr18:20877883-20878109(-)$1	226	183	207	9.9373
UGCCUGCUGAAGCUGUUAGUGGGU	chrX:19373748-19373976(+)$1	228	193	217	8.8067
UGUUUGUUGAUUUUUUUGCAGGUC	chr7:158438114-158438360(-)$1	246	28	52	9.9076
GAGGGGGGCCCAGAGGCCGCCUUU	chr17:45015957-45016256(+)$1	299	235	259	8.2068
gggcauggugggugcaugcuuguc	chr1:204525465-204525717(+)$1	252	217	241	9.7839
UCGUCACAGGAGUCUUUGUAAUGC	chr11:130014234-130014498(+)$1	264	185	209	9.8892
AGUUUUUCUCAUUUGAGGAAAAUG	chr2:114674360-114674591(+)$1	231	45	69	10.5007
GGAUGUGUAUAUGCAUAUGCAAAC	chr1:38326801-38327078(-)$1	277	161	185	10.3389
AUGAGCAAGUAAGUACUUCCUUGU	chr8:91049017-91049269(+)$1	252	143	167	8.5655
CAACGCUAUGAACGCAAGGCUGUG	chr1:11083368-11083584(+)$1	216	66	90	9.8539
ACUCCUCCUGUGUACUAGGAGGAG	chr1:54231495-54231782(-)$1	287	198	222	8.3332
UGUGGUACACUGAUGUUUACCAUA	chr2:87003934-87004215(+)$1	281	141	165	11.1992
cugucauccuugauagccugugau	chr22:19833603-19833870(-)$1	267	109	133	10.1565
GACAGUGUCCAGCCGGUUCUGCAG	chr22:18074966-18075293(-)$1	327	79	103	10.3587
UGUGACCCCAUGUGUGGGGAAGUG	chr9:132897628-132897900(+)$1	272	103	127	8.6252
UAAUGAUAGCUAACGACAUCAUUU	chr8:11688965-11689205(+)$1	240	4	28	8.5226
AGAGCUUGGCAAGUGCAGUACUUU	chr2:219098973-219099216(+)$1	243	10	34	10.1691
AGCUUGCAGGAGGGUCUGCAAGUG	chr7:100733248-100733507(+)$1	259	191	215	11.6262
CCGGACUUUGUGUUUAGAGAUGGG	chr19:10229256-10229507(-)$1	251	216	240	9.2793
AUGUGCCUCUGGUAGGAUGGGCAC	chr11:73114646-73114948(-)$1	302	216	240	9.2056
GAGGAGGUGUAAGGAUUCUUUCUC	chr7:133749262-133749545(+)$1	283	133	157	11.6566
CAGAUUAGUAAGGUGUGCUAAUCU	chr19:9273574-9273811(+)$1	237	109	133	7.6788
UGGCUGAGAUUGCUGUGAAUGCCG	chr5:10258160-10258442(+)$1	282	85	109	9.6406
AUGAUGACUUCGAAGGAGUCAUCA	chr17:4175028-4175306(-)$1	278	104	128	10.3414
GGCUUCUUUGGAAAUGGAGAAAUU	chr15:76225103-76225376(+)$1	273	193	217	10.3707
CCGGGCCAGGGCUGCCUCCCGGGU	chr17:79804204-79804447(-)$1	243	157	181	9.1814
UAAGGAGUAAAGAUUUGCCUUUAA	chr1:182856691-182856966(+)$1	275	109	133	9.6024
CAGGGAGGGCACCAGCCCUGAUCC	chr1:29443720-29443990(+)$1	270	123	147	8.9961
CCCAGUGGCUUCAAGGAAUUUGGG	chr6:7289455-7289671(-)$1	216	160	184	11.2622
CCAGUAGCUUUGAGAAGCUACAUG	chr22:22115421-22115666(-)$1	245	109	133	10.8113
CCCAAUAUUUACCAAAAUUUAGGG	chrX:48970331-48970555(-)$1	224	164	188	9.0300
GAAUUAAAAAUUUCUUUUUAAUCC	chr16:75661574-75661823(-)$1	249	165	189	10.7231

#DB
((.....(((....)))...))))	chr8:117738153-117738378(-)$1	1	168	192	9.1990
(((..(((((....))))).))).	chr11:110101524-110101738(-)$1	1	57	81	9.0823
.(((((.(((....)).).)))))	chr7:30536233-30536492(-)$1	1	100	124	10.0136
((((((((((......))))))))	chr5:34907928-34908165(-)$1	1	158	182	9.3495
(...(((.(((...)))))).)))	chr16:23504623-23504872(-)$1	1	209	233	8.0682
((((((((((....))))))))))	chr14:50085376-50085665(-)$1	1	175	199	12.1670
.((..(((.(....).))))))))	chr19:54710478-54710692(+)$1	1	112	136	9.0629
.(((((((((....))).))).))	chr16:14530256-14530508(-)$1	1	158	182	10.3217
)((((((((((...))))))))))	chr2:238007073-238007338(+)$1	1	183	207	10.0729
(((..(((((....))))).))))	chr9:91926051-91926283(+)$1	1	63	87	9.6649
.(((.(((((....))))).))).	chr19:40953830-40954054(-)$1	1	53	77	9.8635
(((.((((((....))))))...)	chr9:116023084-116023331(+)$1	1	206	230	8.8543
(((....(((....)))...))).	chr2:106510024-106510333(+)$1	1	169	193	9.8213
(..(((((((....)))))))...	chr6:33243641-33243864(+)$1	1	104	128	10.6988
((..(((.((....)).)))..))	chr1:11083385-11083594(+)$1	1	49	73	9.8539
((((.(((.(....).))).))))	chr15:35147978-35148226(-)$1	1	11	35	9.3126
.(((((..((....))..))))).	chr8:124026741-124026973(-)$1	1	53	77	9.7493
(((..(((((....)))))))).)	chr3:182631646-182631884(+)$1	1	148	172	9.8965
..((((((((....))).))))).	chr1:207494985-207495254(+)$1	1	18	42	9.9823
((.(((..((....)).))).)))	chr6:13658955-13659166(-)$1	1	123	147	10.3024
.(((.((.((....)).))))).)	chr16:69681284-69681554(+)$1	1	14	38	9.4138
.(((((((((....))))))))))	chr18:20877883-20878109(-)$1	1	183	207	9.9373
((((((((((.....)))))))))	chrX:19373748-19373976(+)$1	1	193	217	8.8067
(((((((.((....)).))))).)	chr7:158438114-158438360(-)$1	1	28	52	9.9076
(((((.((((....)))).)))))	chr17:45015957-45016256(+)$1	1	235	259	8.2068
(((((..(((....)))...)).)	chr1:204525465-204525717(+)$1	1	217	241	9.7839
.(((.(((((....))))).))).	chr11:130014234-130014498(+)$1	1	185	209	9.8892
.(((((((((....))))))))).	chr2:114674360-114674591(+)$1	1	45	69	10.5007
(..(((((((....)))))))..)	chr1:38326801-38327078(-)$1	1	161	185	10.3389
(((((.((((....)))).)))))	chr8:91049017-91049269(+)$1	1	143	167	8.5655
((..(((.((....)).)))..))	chr1:11083368-11083584(+)$1	1	66	90	9.8539
.(((((((((.....)))))))))	chr1:54231495-54231782(-)$1	1	198	222	8.3332
(((((((.((....)).)))))))	chr2:87003934-87004215(+)$1	1	141	165	11.1992
(((((((.((....))...)))))	chr22:19833603-19833870(-)$1	1	109	133	10.1565
..(((.(.((....))).)))..)	chr22:18074966-18075293(-)$1	1	79	103	10.3587
(....(((((....))))))).))	chr9:132897628-132897900(+)$1	1	103	127	8.6252
.((((((..(....)..)))))))	chr8:11688965-11689205(+)$1	1	4	28	8.5226
((.(((..((....))))).))))	chr2:219098973-219099216(+)$1	1	10	34	10.1691
.(((((((((....))))))))).	chr7:100733248-100733507(+)$1	1	191	215	11.6262
(((..(((((....))))).))))	chr19:10229256-10229507(-)$1	1	216	240	9.2793
))((((((((....)))..)))))	chr11:73114646-73114948(-)$1	1	216	240	9.2056
(((((((.((....)).)))))))	chr7:133749262-133749545(+)$1	1	133	157	11.6566
)(((((((((.....)))))))))	chr19:9273574-9273811(+)$1	1	109	133	7.6788
((((....((....))....))))	chr5:10258160-10258442(+)$1	1	85	109	9.6406
.((((((((((...))))))))))	chr17:4175028-4175306(-)$1	1	104	128	10.3414
((.(((((((....))))))).))	chr15:76225103-76225376(+)$1	1	193	217	10.3707
(((((..(((....))))))))).	chr17:79804204-79804447(-)$1	1	157	181	9.1814
(((((.((((....))))))))))	chr1:182856691-182856966(+)$1	1	109	133	9.6024
))((((((((....)))))..)))	chr1:29443720-29443990(+)$1	1	123	147	8.9961
(((((...((....))...)))))	chr6:7289455-7289671(-)$1	1	160	184	11.2622
...(((((((....)))))))...	chr22:22115421-22115666(-)$1	1	109	133	10.8113
(((...((((....))))...)))	chrX:48970331-48970555(-)$1	1	164	188	9.0300
((.(((((((....))))))))))	chr16:75661574-75661823(-)$1	1	165	189	10.7231

#PSSM
d : 0.16	! : 0.11	f : 0.11	c : 0.09	[ : 0.09	e : 0.09	g : 0.07	= : 0.05	h : 0.03	# : 0.03	" : 0.01	: : 0.01	$ : 0.01	b : 0.01	i : 0.01	F : 0.01	
d : 0.15	c : 0.15	e : 0.11	i : 0.11	f : 0.11	= : 0.09	! : 0.07	g : 0.07	h : 0.03	# : 0.03	" : 0.01	b : 0.01	
c : 0.16	e : 0.16	i : 0.11	= : 0.09	! : 0.07	[ : 0.07	f : 0.07	g : 0.07	d : 0.05	# : 0.03	$ : 0.01	" : 0.01	b : 0.01	
c : 0.15	g : 0.15	! : 0.13	e : 0.13	i : 0.11	= : 0.09	f : 0.07	" : 0.03	# : 0.03	$ : 0.01	[ : 0.01	d : 0.01	b : 0.01	
c : 0.15	g : 0.15	e : 0.13	i : 0.11	! : 0.09	= : 0.09	[ : 0.07	f : 0.07	# : 0.05	$ : 0.01	b : 0.01	" : 0.01	
e : 0.26	c : 0.15	g : 0.11	i : 0.11	= : 0.09	[ : 0.07	f : 0.03	# : 0.03	! : 0.03	" : 0.03	$ : 0.01	b : 0.01	
e : 0.22	c : 0.11	g : 0.11	i : 0.11	= : 0.09	! : 0.09	d : 0.07	f : 0.03	# : 0.03	$ : 0.01	[ : 0.01	b : 0.01	a : 0.01	" : 0.01	
c : 0.16	[ : 0.16	e : 0.15	= : 0.09	g : 0.09	i : 0.09	! : 0.07	d : 0.07	a : 0.01	f : 0.01	# : 0.01	" : 0.01	
b : 0.26	c : 0.15	e : 0.15	= : 0.09	g : 0.09	i : 0.09	d : 0.07	[ : 0.03	f : 0.01	! : 0.01	
b : 0.26	c : 0.15	e : 0.15	= : 0.09	g : 0.09	i : 0.09	d : 0.07	a : 0.05	f : 0.01	
m : 0.86	n : 0.05	= : 0.03	o : 0.01	c : 0.01	
m : 0.86	l : 0.05	n : 0.05	o : 0.01	
m : 0.86	l : 0.05	n : 0.05	o : 0.01	
m : 0.86	l : 0.05	n : 0.05	o : 0.01	
b : 0.26	c : 0.15	e : 0.15	g : 0.09	d : 0.07	= : 0.05	a : 0.05	i : 0.05	n : 0.05	o : 0.01	f : 0.01	
b : 0.26	c : 0.15	e : 0.15	g : 0.09	i : 0.09	= : 0.07	d : 0.07	] : 0.03	o : 0.01	f : 0.01	2 : 0.01	
c : 0.20	e : 0.15	] : 0.15	= : 0.09	g : 0.09	i : 0.09	d : 0.07	2 : 0.03	3 : 0.03	f : 0.01	a : 0.01	4 : 0.01	
e : 0.16	c : 0.13	g : 0.11	i : 0.11	3 : 0.09	= : 0.09	d : 0.07	] : 0.05	f : 0.05	2 : 0.03	a : 0.01	b : 0.01	4 : 0.01	
e : 0.20	c : 0.16	g : 0.13	3 : 0.11	i : 0.11	= : 0.09	] : 0.05	f : 0.05	b : 0.01	2 : 0.01	4 : 0.01	
c : 0.15	g : 0.15	] : 0.13	e : 0.13	i : 0.11	= : 0.09	3 : 0.07	f : 0.07	b : 0.03	4 : 0.01	2 : 0.01	
c : 0.15	e : 0.15	g : 0.15	i : 0.11	= : 0.09	d : 0.07	f : 0.07	b : 0.05	2 : 0.05	] : 0.03	3 : 0.03	
c : 0.16	e : 0.16	d : 0.11	i : 0.11	= : 0.09	2 : 0.07	f : 0.07	] : 0.05	g : 0.05	3 : 0.03	4 : 0.01	b : 0.01	
c : 0.15	e : 0.15	d : 0.13	i : 0.11	= : 0.09	f : 0.09	] : 0.07	g : 0.05	3 : 0.03	h : 0.03	2 : 0.03	4 : 0.01	
d : 0.16	e : 0.15	= : 0.09	c : 0.09	g : 0.07	2 : 0.05	f : 0.05	i : 0.05	: : 0.03	4 : 0.03	h : 0.03	] : 0.03	b : 0.03	F : 0.01	5 : 0.01	3 : 0.01	

#score	517.314170823179
#seq	53
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_transcript_m1_run1.txt

#BEAR
bb[bb[ccc[a[a[cccooooooccc]aa]cccbb]bb]b	chr3:101106838-101107055(-)$1	217	105	145	14.6480
a============!!bboooooobb333============	chr7:150650545-150650792(-)$1	247	120	160	21.0024
d[ccc[============nnnnn============ccc33	chr16:24763797-24764044(+)$1	247	74	114	16.5760
d"""eeeee$$$$$cccooooooccc22eeeee333dddd	chr1:179008197-179008503(+)$1	306	71	111	14.3608
ggggggg4444==========ccc22bb]===========	chr1:193008969-193009217(-)$1	248	165	205	12.4821
ee[ccceeeee!!a[bboooooobb]a22eeeee]ccc22	chr1:180664636-180664885(+)$1	249	119	159	14.2503
ggggggg"""bb!!a[aooooooa]a22bb4444gggggg	chr3:128206107-128206355(-)$1	248	11	51	16.5673
===[bb[a[bb[a[cccoooooocccabba]bb]======	chr1:182360288-182360507(-)$1	219	45	85	16.7459
=lll============a]dddd]bb22=============	chr16:383781-384027(-)$1	246	158	198	12.9668
========!!bb[a!!ccclllccc22a]bb]========	chr2:240947213-240947447(-)$1	234	184	224	16.3865
$$bb[iiiiiiiiirrrrrrrrriiiiiiiii]bbggggg	chr14:103108371-103108621(+)$1	250	134	174	13.0677
ffff[iiiiiiiii[a[ccclllccc]aiiiiiiiii]ff	chr5:134549477-134549732(+)$1	255	4	44	14.8712
dd!!iiiiiiiiiddddmmmmdddd333iiiiiiiii]dd	chr4:111117748-111118064(-)$1	316	176	216	14.1264
dd"""eeeee[bbddddoooooodddd]bb]eeeee333d	chr19:18547932-18548224(-)$1	292	11	51	13.2127
##bb[dddd"""cccbboooooobb]cccdddd]bb====	chr7:50847292-50847567(-)$1	275	36	76	13.8729
===========[ccc[apppppppa]ccc===========	chr17:30678485-30678729(+)$1	244	98	138	14.3557
#iiiiiiiii$$$$$cccnnnnnccc4444iiiiiiiii6	chr1:143164226-143164502(+)$1	276	79	119	16.3878
ggggggg[==========lll==========22ggggggg	chr16:1413501-1413765(-)$1	264	179	219	15.7940
""dddd[ccc!!eeeeeooooooeeeeeccc]dddd]iii	chr2:236488957-236489245(+)$1	288	175	215	13.9722
ccc[cccdddd[eeeeeooooooeeeee]dddd]ccc]cc	chr1:47696987-47697240(-)$1	253	111	151	13.0604
ddd####ffffff[cccooooooccc22ffffff4444dd	chr16:47649122-47649374(+)$1	252	181	221	13.7937
ggggggg!!ccc####cccmmmmccc22ccc]ggggggg:	chr16:70582729-70582999(+)$1	270	222	262	13.1784
===========ffffffooooooffffff:ffffffdddd	chr7:63989433-63989696(-)$1	263	74	114	13.2602
iiibbeeeee[bb[cccooooooccc]bb]eeeee]bb]i	chr16:1360174-1360433(+)$1	259	187	227	14.1627
##iiiiiiiiiaeeeeellleeeee]a]iiiiiiiiiccc	chr1:207519603-207519851(+)$1	248	28	68	14.6947
FF==========!!cccqqqqqqqqccc22==========	chr6:89662475-89662743(-)$1	268	147	187	13.5796
ccc!!gggggggeeeeeooooooeeeee]ggggggg]ccc	chr22:20046497-20046777(+)$1	280	233	273	15.9012
fff"""a[a[iiiiiiiiimmmmiiiiiiiii]a]a333f	chrX:136066016-136066281(+)$1	265	98	138	12.9146
fffggggggg!!eeeeeooooooeeeee22ggggggg333	chr10:181454-181743(+)$1	289	182	222	15.9726
ddddiiiiiiiii[bbbbnnnnnbb]bb]iiiiiiiii22	chr16:56407035-56407304(-)$1	269	73	113	13.7342
iiiiiiii[bbeeeeennnnneeeee22bb]iiiiiiiii	chr21:46693940-46694201(-)$1	261	105	145	13.4310
#iiiiiiiii!!eeeeeooooooeeeee4444iiiiiiii	chr21:44267980-44268241(-)$1	261	91	131	17.8695
==========####cccooooooccc55555=========	chr17:56736284-56736581(-)$1	297	105	145	16.9906
hhhhhh[eeeee!!cccooooooccc4444eeeee]hhhh	chr7:908153-908381(+)$1	228	175	215	14.0742
==####ggggggg[ddddnnnnndddd]ggggggg=====	chr22:17125453-17125736(+)$1	283	170	210	14.8720
$$$$$gggggggeeeeeooooooeeeee22gggggggccc	chr1:54818656-54818923(-)$1	267	188	228	14.7457
ddggggggg!!eeeee!!annnnna22eeeeeggggggg2	chr17:76117660-76117957(-)$1	297	14	54	12.7745
a[eeeee!!eeeee[bboooooobb]eeeeeeeeee]a22	chr21:44395377-44395637(+)$1	260	194	234	12.8526
$$$$ggggggg####bboooooobb22ggggggg22ffff	chr22:20305664-20305925(-)$1	261	182	222	15.2932
bb[ggggggg[ccc####ammmma4444ccc]ggggggg]	chr2:242439027-242439293(-)$1	266	17	57	13.8517
iiiiiiccc[ccc[ccc!!ammmma22ccc]ccc]ccccc	chr11:129993734-129993961(+)$1	227	112	152	12.6391
fffff!!ccc[a[ddddoooooodddd]accc]ffffff]	chr7:66401605-66401865(+)$1	260	105	145	13.6819
===========bb[cccnnnnnccc333bb]=========	chr7:158703514-158703773(+)$1	259	182	222	17.8597
"iiiiiiiii"""eeeeellleeeee22iiiiiiiii444	chr12:133403719-133403947(-)$1	228	117	157	15.9787
ee::iiiiiiiiia[bboooooobb]a22iiiiiiiiiCC	chr8:30932444-30932725(+)$1	281	228	268	13.3184
===[bb[a[bb[a[cccoooooocccabba]bb]======	chr1:182360226-182360488(-)$1	262	26	66	16.7459
cc[ggggggg[gggggggnnnnngggggggggggggg]cc	chr1:108870345-108870627(+)$1	282	231	271	14.3415
cc[dddd[bb[a!!cccooooooccc22a]bbdddd]ccc	chr3:128452037-128452341(+)$1	304	252	292	14.6211
ffffff####gggggggooooooggggggg4444ffffff	chr1:2167304-2167556(+)$1	252	53	93	13.4529
=========[bb[a[bb[ccclllccc]bb]a]bb]====	chr5:1804104-1804335(+)$1	231	1	41	13.3700
(a[============arrrrrrrrra]============a	chr10:11921570-11921838(-)$1	268	187	227	16.3906
======!!bb$$$$$cccnnnnnccc22bb]=========	chr2:168702944-168703224(-)$1	280	76	116	16.4119
=======^^^^^^^^^^^^^^^^^^^^^============	chr6:158981838-158982096(+)$1	258	5	45	12.8977
gggg[iiiiiiiiiddddllldddd]iiiiiiiii]gggg	chr17:80209000-80209286(-)$1	286	80	120	14.8212
"a[ggggggg$$$$$cccmmmmccc4444ggggggg]a33	chr2:11917324-11917624(+)$1	300	103	143	14.6022

#otherMatches

#Seq PSSM
auuggugaugguaguagcugugucuggucaauccuuauuc	chr3:101106838-101107055(-)$1	217	105	145	14.6480
GUACAGGGGCUGUGUGUGUCACUGCUGAGCAGUCCCUGUG	chr7:150650545-150650792(-)$1	247	120	160	21.0024
CUCUGUCAGAGGCUGUUUAUGUAGGACAGUCUUUGCAGUC	chr16:24763797-24764044(+)$1	247	74	114	16.5760
AAUUGGAGAGUGAAGCAACAUCCUGUUAUCUUCUUGUCAU	chr1:179008197-179008503(+)$1	306	71	111	14.3608
aaccauuuauuggaggaacuacccuuucucuauuguauau	chr1:193008969-193009217(-)$1	248	165	205	12.4821
agggggaucuaguuucauuuuucugcauauggauauccag	chr1:180664636-180664885(+)$1	249	119	159	14.2503
AGUGUGGGUGUGUGCGUGUCGCUGGGAUCAAGUGCCACAC	chr3:128206107-128206355(-)$1	248	11	51	16.5673
GCUGUGGAUGGAGUGGCGGUGCGGUCCCCUGUGGAGCGCA	chr1:182360288-182360507(-)$1	219	45	85	16.7459
uugggugccaugguacugggugugcugugguacugggugc	chr16:383781-384027(-)$1	246	158	198	12.9668
CCCUCUGCCUGUGCUCGGUUAGGCCCUGGGCUGUGGAGGG	chr2:240947213-240947447(-)$1	234	184	224	16.3865
UUGUCCUUUCAGUUUCUUACUCUAAUUGAAAGAAUACAUA	chr14:103108371-103108621(+)$1	250	134	174	13.0677
GGGGUGUAGGGAAGGCCGGGGAGCUCAGUUUCCCUGCUCU	chr5:134549477-134549732(+)$1	255	4	44	14.8712
GCGGUGGGCUAGGGGCCCAAGGGCCGCGUCUGGCCCGAGC	chr4:111117748-111118064(-)$1	316	176	216	14.1264
GCGAAGCUCUGUGGGGCGGGAGGGCUUGCAGGGGGCGGGG	chr19:18547932-18548224(-)$1	292	11	51	13.2127
AAAUGUGUAAAUGGUACCUGUAAGUCACCUACAAAUAAUU	chr7:50847292-50847567(-)$1	275	36	76	13.8729
GUUUUUUGGGGUGGUGAAGAGAGCUGGCCUUCUAGGAAAU	chr17:30678485-30678729(+)$1	244	98	138	14.3557
ucuggggaacuugucuugagccccaacuuuguucucuggc	chr1:143164226-143164502(+)$1	276	79	119	16.3878
GGGGCGUAGGAGCUGGCUGGCGGCCGGCUCUGCAUGUUCU	chr16:1413501-1413765(-)$1	264	179	219	15.7940
CUACUCCACCAUUCUAGUGUCUUCUAGAGGUAGAGUCGAG	chr2:236488957-236489245(+)$1	288	175	215	13.9722
UUCUGUGGGGCUGGACCCUGUGUGGUCCUGUCCGCACUGA	chr1:47696987-47697240(-)$1	253	111	151	13.0604
UGAAGCAGAGGUUGGGUUGGCUCACCAGGACUUUGAAGUU	chr16:47649122-47649374(+)$1	252	181	221	13.7937
CUGCAAUAGCAGGAAAGUCUUGUGACAAUUGAAUUGCAGC	chr16:70582729-70582999(+)$1	270	222	262	13.1784
uugucauauuaccagaguugguuuuuugguuccuuugcag	chr7:63989433-63989696(-)$1	263	74	114	13.2602
UAUCGGUUGAAUAGUAGUUGGUUCUGGUAGUUAACGUGCG	chr16:1360174-1360433(+)$1	259	187	227	14.1627
agugcucagcugcuauuggugguggacuggcugagcaucc	chr1:207519603-207519851(+)$1	248	28	68	14.6947
uuggugugauuguuauugcucuucugguucuagucacacu	chr6:89662475-89662743(-)$1	268	147	187	13.5796
aggaauuuagggaguugcugagacagcugcccugaacccu	chr22:20046497-20046777(+)$1	280	233	273	15.9012
CCGAUGUGAGGGAGGAGAAGGAGUUCUUUUUCGUGGUGGU	chrX:136066016-136066281(+)$1	265	98	138	12.9146
GCUCGCGAAGAGCUCCGAGCUGCCGGGGAGCUUUGUGGAU	chr10:181454-181743(+)$1	289	182	222	15.9726
agcuuugaucagaccccagcagaugagguucugguugagu	chr16:56407035-56407304(-)$1	269	73	113	13.7342
agcuugguuguuguugguguguagcagugcuacugaguug	chr21:46693940-46694201(-)$1	261	105	145	13.4310
GCUGAGGCCCACUCCUCUCUGCUGGGGAUCAGGGGUUUCA	chr21:44267980-44268241(-)$1	261	91	131	17.8695
UGUUGUUGCGUGUGUUUAUUUUCAGAGUUGUUGUAGUGGC	chr17:56736284-56736581(-)$1	297	105	145	16.9906
GUGCUGGUUCCCUGUGGUGUUGGUCGGAUUGGGGGGCAGU	chr7:908153-908381(+)$1	228	175	215	14.0742
aucuuuuuguaggccaagaaaaacuuguuuuaugaauuug	chr22:17125453-17125736(+)$1	283	170	210	14.8720
AUGACGGUCUGAGGACACGGCGCUGUCCGGUCGGGCCGCC	chr1:54818656-54818923(-)$1	267	188	228	14.7457
AAAGGGCAGGUGGGGCAUGGGGAACUGGCCCUCUGUCCUG	chr17:76117660-76117957(-)$1	297	14	54	12.7745
UGACAGGAAGUGCCGGGCAGGGUCUGGGCGCCCUGUGGGU	chr21:44395377-44395637(+)$1	260	194	234	12.8526
uggauguuggauuuuggcaguucccuuuucggcagcucuu	chr22:20305664-20305925(-)$1	261	182	222	15.2932
GGUCUGGCCCUGCUGAGAGCAGACGGGAGGCUGGGCCAGC	chr2:242439027-242439293(-)$1	266	17	57	13.8517
GGCAGUGGUAAGCUCAGUUCUCGUGUCCUGUGCUCACCGU	chr11:129993734-129993961(+)$1	227	112	152	12.6391
agguuuuccagccggugugcaguugcucgugguagccugu	chr7:66401605-66401865(+)$1	260	105	145	13.6819
GCCCGUGGGCCGAGGGCGAUUGGCUGUGUCAGGCCUGUGG	chr7:158703514-158703773(+)$1	259	182	222	17.8597
CACCAGGUACUCUUUUCCUGAGGAAAUCGUGUUUGGUUUU	chr12:133403719-133403947(-)$1	228	117	157	15.9787
uaagaucuccaagggaugaaaggaugcaguuuggagauga	chr8:30932444-30932725(+)$1	281	228	268	13.3184
GCUGUGGAUGGAGUGGCGGUGCGGUCCCCUGUGGAGCGCA	chr1:182360226-182360488(-)$1	262	26	66	16.7459
gugacaaagguaaaaugcuuccuguguuuuccuuuguggu	chr1:108870345-108870627(+)$1	282	231	271	14.3415
uaggguaugugucuguauucauuugcuagggcugccguaa	chr3:128452037-128452341(+)$1	304	252	292	14.6211
GCUCCUGUCUUUUGUUUGGGGGGAAACAGAUAAAGGGGGC	chr1:2167304-2167556(+)$1	252	53	93	13.4529
AGAAACCGAUGGAUGUGGGGAGGGUUCGCAGGCCCUUUGG	chr5:1804104-1804335(+)$1	231	1	41	13.3700
ugucccuggucggggcugguugguugucccuggucggggc	chr10:11921570-11921838(-)$1	268	187	227	16.3906
uguuuugauguguuuacaggauuuguuucaagaaacagag	chr2:168702944-168703224(-)$1	280	76	116	16.4119
GGGCUUUUUUUUUUUUCUUUACCUCUUUGAAGUCCAGGGU	chr6:158981838-158982096(+)$1	258	5	45	12.8977
GCUUGUCAGUGAGAGGCCGGCGGCCGUCUUGUUGAGGGGC	chr17:80209000-80209286(-)$1	286	80	120	14.8212
ACGGGCAGCAUUUAUGGUGGUGGCCUGUUUGCUGUUGGGG	chr2:11917324-11917624(+)$1	300	103	143	14.6022

#DB
((.((.(((.(.(.(((......))).)).))))).)).)	chr3:101106838-101107055(-)$1	1	105	145	14.6480
)((((((((((((..((......))...))))))))))))	chr7:150650545-150650792(-)$1	1	120	160	21.0024
(.(((.((((((((((((.....)))))))))))))))..	chr16:24763797-24764044(+)$1	1	74	114	16.5760
(...(((((.....(((......)))..)))))...))))	chr1:179008197-179008503(+)$1	1	71	111	14.3608
)))))))....)))))))))))))..)).)))))))))))	chr1:193008969-193009217(-)$1	1	165	205	12.4821
((.((((((((..(.((......)).)..))))).)))..	chr1:180664636-180664885(+)$1	1	119	159	14.2503
(((((((...((..(.(......).)..))....))))))	chr3:128206107-128206355(-)$1	1	11	51	16.5673
(((.((.(.((.(.(((......))))))).)).))))))	chr1:182360288-182360507(-)$1	1	45	85	16.7459
(...))))))))))))).)))).))..)))))))))))))	chr16:383781-384027(-)$1	1	158	198	12.9668
((((((((..((.(..(((...)))..).)).))))))))	chr2:240947213-240947447(-)$1	1	184	224	16.3865
..((.(((((((((.........))))))))).)))))))	chr14:103108371-103108621(+)$1	1	134	174	13.0677
((((.(((((((((.(.(((...))).)))))))))).))	chr5:134549477-134549732(+)$1	1	4	44	14.8712
((..(((((((((((((....))))...))))))))).))	chr4:111117748-111118064(-)$1	1	176	216	14.1264
((...(((((.((((((......)))).)).)))))...)	chr19:18547932-18548224(-)$1	1	11	51	13.2127
..((.((((...(((((......)).))))))).))))))	chr7:50847292-50847567(-)$1	1	36	76	13.8729
(((((((((((.(((.(.......).))))))))))))))	chr17:30678485-30678729(+)$1	1	98	138	14.3557
.(((((((((.....(((.....)))....))))))))).	chr1:143164226-143164502(+)$1	1	79	119	16.3878
(((((((.((((((((((...))))))))))..)))))))	chr16:1413501-1413765(-)$1	1	179	219	15.7940
..((((.(((..(((((......)))))))).)))).)))	chr2:236488957-236489245(+)$1	1	175	215	13.9722
(((.(((((((.(((((......))))).)))).))).))	chr1:47696987-47697240(-)$1	1	111	151	13.0604
(((....((((((.(((......)))..))))))....))	chr16:47649122-47649374(+)$1	1	181	221	13.7937
(((((((..(((....(((....)))..))).))))))).	chr16:70582729-70582999(+)$1	1	222	262	13.1784
)))))))))))((((((......)))))).((((((((((	chr7:63989433-63989696(-)$1	1	74	114	13.2602
((((((((((.((.(((......))).)).))))).)).)	chr16:1360174-1360433(+)$1	1	187	227	14.1627
..(((((((((((((((...))))).).))))))))))))	chr1:207519603-207519851(+)$1	1	28	68	14.6947
((((((((((((..(((........)))..))))))))))	chr6:89662475-89662743(-)$1	1	147	187	13.5796
(((..((((((((((((......))))).))))))).)))	chr22:20046497-20046777(+)$1	1	233	273	15.9012
(((...(.(.(((((((((....))))))))).).)...)	chrX:136066016-136066281(+)$1	1	98	138	12.9146
((((((((((..(((((......)))))..)))))))...	chr10:181454-181743(+)$1	1	182	222	15.9726
(((((((((((((.((((.....)).)).)))))))))..	chr16:56407035-56407304(-)$1	1	73	113	13.7342
((((((((.(((((((.....)))))..)).)))))))))	chr21:46693940-46694201(-)$1	1	105	145	13.4310
.(((((((((..(((((......)))))....))))))))	chr21:44267980-44268241(-)$1	1	91	131	17.8695
((((((((((....(((......))).....)))))))))	chr17:56736284-56736581(-)$1	1	105	145	16.9906
((((((.(((((..(((......)))....))))).))))	chr7:908153-908381(+)$1	1	175	215	14.0742
((....(((((((.((((.....)))).))))))))))))	chr22:17125453-17125736(+)$1	1	170	210	14.8720
.....((((((((((((......)))))..))))))))))	chr1:54818656-54818923(-)$1	1	188	228	14.7457
(((((((((..(((((..(.....)..)))))))))))).	chr17:76117660-76117957(-)$1	1	14	54	12.7745
(.(((((..(((((.((......)).)))))))))).)..	chr21:44395377-44395637(+)$1	1	194	234	12.8526
....(((((((....((......))..)))))))..))))	chr22:20305664-20305925(-)$1	1	182	222	15.2932
((.(((((((.(((....(....)....))).))))))).	chr2:242439027-242439293(-)$1	1	17	57	13.8517
))))))(((.(((.(((..(....)..))).))).)))((	chr11:129993734-129993961(+)$1	1	112	152	12.6391
(((((..(((.(.((((......)))).)))).)))))).	chr7:66401605-66401865(+)$1	1	105	145	13.6819
(((((((((((((.(((.....)))...)).)))))))))	chr7:158703514-158703773(+)$1	1	182	222	17.8597
.(((((((((...(((((...)))))..)))))))))...	chr12:133403719-133403947(-)$1	1	117	157	15.9787
))..((((((((((.((......)).)..)))))))))))	chr8:30932444-30932725(+)$1	1	228	268	13.3184
(((.((.(.((.(.(((......))))))).)).))))))	chr1:182360226-182360488(-)$1	1	26	66	16.7459
((.(((((((.(((((((.....)))))))))))))).))	chr1:108870345-108870627(+)$1	1	231	271	14.3415
((.((((.((.(..(((......)))..).)))))).)))	chr3:128452037-128452341(+)$1	1	252	292	14.6211
((((((....(((((((......)))))))....))))))	chr1:2167304-2167556(+)$1	1	53	93	13.4529
(((((((((.((.(.((.(((...))).)).).)).))))	chr5:1804104-1804335(+)$1	1	1	41	13.3700
.(.(((((((((((((.........).)))))))))))))	chr10:11921570-11921838(-)$1	1	187	227	16.3906
((((((..((.....(((.....)))..)).)))))))))	chr2:168702944-168703224(-)$1	1	76	116	16.4119
(((((((.....................))))))))))))	chr6:158981838-158982096(+)$1	1	5	45	12.8977
((((.(((((((((((((...)))).))))))))).))))	chr17:80209000-80209286(-)$1	1	80	120	14.8212
.(.(((((((.....(((....)))....))))))).)..	chr2:11917324-11917624(+)$1	1	103	143	14.6022

#PSSM
= : 0.21	d : 0.12	g : 0.09	f : 0.09	# : 0.07	c : 0.07	$ : 0.05	" : 0.05	i : 0.05	b : 0.03	a : 0.03	e : 0.03	F : 0.01	h : 0.01	( : 0.01	
= : 0.21	i : 0.10	g : 0.09	f : 0.09	d : 0.09	c : 0.07	$ : 0.05	b : 0.03	[ : 0.03	" : 0.03	e : 0.03	# : 0.03	a : 0.03	l : 0.01	F : 0.01	h : 0.01	
= : 0.21	[ : 0.12	i : 0.12	g : 0.10	f : 0.09	c : 0.05	d : 0.05	" : 0.03	b : 0.03	$ : 0.03	l : 0.01	! : 0.01	h : 0.01	# : 0.01	e : 0.01	: : 0.01	
= : 0.20	g : 0.18	i : 0.10	b : 0.07	" : 0.05	[ : 0.05	f : 0.05	d : 0.05	c : 0.03	! : 0.03	# : 0.03	$ : 0.03	l : 0.01	h : 0.01	e : 0.01	: : 0.01	
= : 0.21	g : 0.18	i : 0.16	b : 0.07	[ : 0.07	c : 0.05	e : 0.03	" : 0.03	d : 0.03	# : 0.03	f : 0.03	! : 0.01	h : 0.01	$ : 0.01	
= : 0.21	g : 0.21	i : 0.21	e : 0.07	d : 0.05	[ : 0.03	c : 0.03	b : 0.03	# : 0.03	" : 0.01	h : 0.01	! : 0.01	f : 0.01	
g : 0.23	= : 0.21	i : 0.20	e : 0.09	[ : 0.07	c : 0.05	d : 0.03	# : 0.03	! : 0.03	a : 0.01	
= : 0.20	i : 0.20	g : 0.16	e : 0.09	c : 0.07	[ : 0.05	! : 0.05	a : 0.03	d : 0.03	4 : 0.01	" : 0.01	f : 0.01	# : 0.01	^ : 0.01	
= : 0.20	i : 0.18	g : 0.16	e : 0.09	c : 0.07	[ : 0.05	! : 0.05	d : 0.03	b : 0.03	4 : 0.01	" : 0.01	f : 0.01	a : 0.01	# : 0.01	^ : 0.01	
= : 0.18	i : 0.18	g : 0.14	e : 0.09	b : 0.09	[ : 0.07	c : 0.05	" : 0.03	! : 0.03	$ : 0.01	4 : 0.01	d : 0.01	f : 0.01	# : 0.01	^ : 0.01	
= : 0.16	i : 0.14	b : 0.10	[ : 0.10	g : 0.09	$ : 0.07	! : 0.07	e : 0.05	" : 0.03	c : 0.03	a : 0.01	4 : 0.01	d : 0.01	f : 0.01	# : 0.01	^ : 0.01	
= : 0.12	i : 0.12	b : 0.10	[ : 0.09	g : 0.09	$ : 0.07	! : 0.07	e : 0.07	c : 0.05	a : 0.05	" : 0.03	f : 0.03	# : 0.03	^ : 0.01	
e : 0.18	i : 0.12	= : 0.10	! : 0.09	$ : 0.07	c : 0.07	a : 0.05	[ : 0.05	b : 0.05	# : 0.05	g : 0.05	f : 0.03	" : 0.01	^ : 0.01	
e : 0.20	[ : 0.16	! : 0.09	= : 0.09	$ : 0.07	a : 0.07	i : 0.07	d : 0.05	c : 0.05	# : 0.05	g : 0.03	f : 0.01	^ : 0.01	
c : 0.25	e : 0.18	= : 0.09	[ : 0.09	d : 0.09	$ : 0.05	# : 0.05	! : 0.03	g : 0.03	a : 0.01	r : 0.01	f : 0.01	i : 0.01	b : 0.01	^ : 0.01	
c : 0.27	e : 0.18	b : 0.14	d : 0.09	= : 0.07	[ : 0.03	a : 0.03	# : 0.03	g : 0.03	! : 0.01	r : 0.01	f : 0.01	i : 0.01	^ : 0.01	
c : 0.30	b : 0.14	e : 0.14	d : 0.09	= : 0.05	a : 0.05	r : 0.03	g : 0.03	[ : 0.01	f : 0.01	i : 0.01	n : 0.01	! : 0.01	# : 0.01	^ : 0.01	
o : 0.47	c : 0.10	= : 0.05	r : 0.03	n : 0.03	d : 0.03	! : 0.03	] : 0.01	m : 0.01	p : 0.01	l : 0.01	q : 0.01	i : 0.01	b : 0.01	# : 0.01	e : 0.01	g : 0.01	[ : 0.01	^ : 0.01	
o : 0.47	n : 0.14	c : 0.07	l : 0.07	r : 0.03	m : 0.03	a : 0.03	= : 0.01	d : 0.01	p : 0.01	q : 0.01	i : 0.01	! : 0.01	^ : 0.01	
o : 0.47	n : 0.16	l : 0.09	m : 0.09	r : 0.03	c : 0.03	= : 0.01	d : 0.01	p : 0.01	q : 0.01	a : 0.01	^ : 0.01	
o : 0.47	n : 0.16	m : 0.10	l : 0.09	r : 0.03	= : 0.01	d : 0.01	p : 0.01	e : 0.01	q : 0.01	c : 0.01	^ : 0.01	
o : 0.47	n : 0.14	m : 0.09	d : 0.05	l : 0.05	e : 0.05	r : 0.03	c : 0.01	p : 0.01	= : 0.01	q : 0.01	^ : 0.01	
o : 0.47	n : 0.12	c : 0.07	m : 0.07	e : 0.05	r : 0.03	l : 0.03	d : 0.03	] : 0.01	p : 0.01	= : 0.01	q : 0.01	^ : 0.01	
c : 0.30	e : 0.16	b : 0.14	d : 0.09	= : 0.03	a : 0.03	i : 0.03	g : 0.03	p : 0.01	f : 0.01	q : 0.01	n : 0.01	m : 0.01	l : 0.01	r : 0.01	^ : 0.01	
c : 0.30	e : 0.16	b : 0.14	d : 0.09	a : 0.05	= : 0.03	i : 0.03	g : 0.03	2 : 0.01	] : 0.01	f : 0.01	q : 0.01	4 : 0.01	r : 0.01	^ : 0.01	
c : 0.27	] : 0.14	e : 0.14	2 : 0.10	3 : 0.05	d : 0.05	= : 0.03	a : 0.03	i : 0.03	4 : 0.03	g : 0.03	f : 0.01	^ : 0.01	
2 : 0.23	e : 0.12	a : 0.09	] : 0.07	c : 0.07	4 : 0.07	3 : 0.05	i : 0.05	d : 0.05	= : 0.03	b : 0.03	g : 0.03	f : 0.01	5 : 0.01	^ : 0.01	
2 : 0.18	e : 0.14	b : 0.09	] : 0.09	= : 0.07	c : 0.07	4 : 0.07	a : 0.05	3 : 0.05	i : 0.05	g : 0.05	f : 0.01	5 : 0.01	^ : 0.01	
b : 0.16	i : 0.12	= : 0.10	c : 0.10	] : 0.09	2 : 0.09	4 : 0.07	g : 0.07	a : 0.05	e : 0.05	f : 0.03	5 : 0.01	
i : 0.16	= : 0.14	b : 0.12	g : 0.10	c : 0.09	e : 0.07	] : 0.05	4 : 0.05	2 : 0.05	a : 0.03	d : 0.03	f : 0.01	: : 0.01	5 : 0.01	
i : 0.18	= : 0.16	] : 0.14	g : 0.12	e : 0.10	c : 0.09	4 : 0.05	b : 0.03	d : 0.03	f : 0.03	5 : 0.01	
= : 0.20	i : 0.20	e : 0.12	g : 0.12	] : 0.07	c : 0.05	4 : 0.05	b : 0.05	d : 0.03	f : 0.03	2 : 0.01	a : 0.01	
= : 0.21	i : 0.18	g : 0.18	e : 0.10	] : 0.07	d : 0.07	c : 0.03	4 : 0.03	b : 0.03	f : 0.03	2 : 0.01	
= : 0.21	g : 0.20	i : 0.18	e : 0.09	] : 0.07	b : 0.05	f : 0.05	4 : 0.03	d : 0.03	3 : 0.01	a : 0.01	c : 0.01	
= : 0.25	g : 0.20	i : 0.18	b : 0.07	e : 0.07	] : 0.05	f : 0.05	d : 0.03	3 : 0.01	c : 0.01	4 : 0.01	2 : 0.01	
= : 0.25	g : 0.20	i : 0.16	] : 0.09	c : 0.07	f : 0.05	e : 0.03	d : 0.03	3 : 0.01	b : 0.01	4 : 0.01	a : 0.01	2 : 0.01	
= : 0.29	g : 0.18	i : 0.16	] : 0.09	c : 0.07	f : 0.05	b : 0.03	d : 0.03	3 : 0.03	4 : 0.01	h : 0.01	
= : 0.29	c : 0.12	g : 0.12	i : 0.10	] : 0.07	3 : 0.05	f : 0.05	b : 0.03	d : 0.03	4 : 0.03	a : 0.03	h : 0.01	
= : 0.29	g : 0.12	c : 0.12	3 : 0.09	d : 0.07	f : 0.07	i : 0.07	2 : 0.05	] : 0.03	h : 0.01	4 : 0.01	C : 0.01	
= : 0.27	c : 0.12	d : 0.09	2 : 0.07	g : 0.07	f : 0.07	i : 0.07	3 : 0.05	] : 0.03	b : 0.01	6 : 0.01	: : 0.01	h : 0.01	4 : 0.01	C : 0.01	a : 0.01	

#score	807.789785862646
#seq	55
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_transcript_m1_run2.txt

#BEAR
iii[a[a!!eeeee[cccmmmmccc333eeeee22a]a]	chr19:3362427-3362750(+)$1	323	190	229	12.2475
ccc[ccc[ccc"""ddddmmmmdddd333cccccc]ccc	chr11:130785333-130785596(-)$1	263	18	57	14.0517
iiiiiiiii[ddddrrrrrrrrrdddd333iiiiiiiii	chr14:21269759-21270006(-)$1	247	30	69	13.9361
ccc[ccc$$$$$cccooooooccc333cccccc333fff	chr11:18530988-18531250(-)$1	262	121	160	12.9881
:ccc[bb####eeeeeooooooeeeee55555bb]cccg	chr1:31211703-31211975(-)$1	272	54	93	11.7688
A::dddd[ddddeeeeennnnneeeee4444dddd333d	chr1:87368928-87369182(-)$1	254	208	247	11.7081
ffffff$$$$$a!!cccnnnnnccc22a22ffffffiii	chrX:119010376-119010619(+)$1	243	75	114	12.4515
[a[ggggggg[ddddbbnnnnnbb]ddddggggggg]ac	chr19:47280134-47280362(-)$1	228	9	48	11.9309
iiiiiiiii"""eeeeennnnneeeee333iiiiiiiii	chr6:26285255-26285468(-)$1	213	9	48	18.2386
ddd[ccc[eeeee[a[ccclllccc]aeeeee333ccc]	chr12:56524474-56524721(+)$1	247	200	239	11.3767
ffff[a$$$$$eeeeeooooooeeeee333a]ffffff3	chr2:231740348-231740624(+)$1	276	167	206	15.1090
ddd!!ccc$$$$$ddddmmmmdddd4444ccc]dddd]f	chr19:11218029-11218282(+)$1	253	126	165	11.6940
!ffffffdddd"""ddddmmmmdddd333dddd333fff	chr3:31663497-31663756(+)$1	259	65	104	11.4987
=======ccc####cccooooooccc4444ccc22====	chrX:49029695-49029927(+)$1	232	94	133	15.9276
$dddd[===========nnnnn===========dddd66	chr8:29961857-29962103(+)$1	246	119	158	11.8761
iiiiiiii[dddd[ccclllccc]dddd4444iiiiiii	chr1:40557713-40557944(-)$1	231	168	207	13.3790
=======!!ccceeeeellleeeee]ccc]=========	chr19:14675826-14676035(+)$1	209	8	47	14.4366
hhhhhh$$$$$eeeeeooooooeeeee4444hhhhhhhh	chr6:75968395-75968631(-)$1	236	46	85	13.8541
"""ccc[ccc!!addddnnnnndddd]a666666ccc]c	chr2:188348749-188349018(-)$1	269	94	133	13.2175
[bb[ccc[eeeee[cccnnnnnccc]eeeeeccc]bbcc	chr6:44198104-44198318(+)$1	214	6	45	12.6467
d[ddddccc!!ccc!!annnnna22ccc22ccc]ddddd	chr6:122768165-122768375(-)$1	210	18	57	11.9458
=====####eeeeeqqqqqqqqeeeee22==========	chr1:20982092-20982347(-)$1	255	20	59	12.5956
eee[ccc[ccc!!ddddnnnnndddd22ccc]ccc]eee	chr14:53133079-53133314(-)$1	235	194	233	14.5238
ggggaa!!ccc[ddddoooooodddd55555ccc22a]a	chr12:104327839-104328109(+)$1	270	179	218	12.5066
hhhhhhhhh!!eeeeeooooooeeeee333hhhhhhhh:	chr12:50156555-50156779(+)$1	224	82	121	12.7473
ff"""ggggggg!!cccnnnnnccc4444ggggggg22f	chr13:100211593-100211838(+)$1	245	59	98	13.9336
=========="""ddddoooooodddd333=========	chr1:207958315-207958526(+)$1	211	170	209	17.2986
gggg!!bb"""ddddqqqqqqqqdddd333bb]gggggg	chr2:10928776-10928995(-)$1	219	99	138	11.3357
fff[=============mmmm=============4444f	chr3:13363004-13363244(-)$1	240	115	154	12.3710
!dddd!!ccc[ccc!!ccclllccc]cccccc333dddd	chr12:7295407-7295696(+)$1	289	198	237	11.1071
))iiiiiiiii[eeeeennnnneeeee7777777iiiii	chr1:55319006-55319274(-)$1	268	153	192	12.4192
[============[bboooooobb]============dd	chr20:34142713-34142947(+)$1	234	161	200	13.6052
!!ccc"""bb!!eeeeeooooooeeeee22bb22cccbb	chr5:74642971-74643235(+)$1	264	103	142	14.0564
dddd"""eeeee!!cccnnnnnccc]eeeee4444dddd	chr17:79804204-79804469(-)$1	265	51	90	11.9360
ggg[ccc[ccc!!eeeeellleeeeeccc]ccc]ggggg	chr19:11455827-11456109(-)$1	282	136	175	14.1244
ffa[eeeeebb[eeeeennnnneeeee]bb22eeeee]a	chr15:89449763-89450016(-)$1	253	39	78	12.0177
####ccc[eeeeeacccooooooccc]a333eeeee]cc	chr11:130005357-130005651(+)$1	294	218	257	13.6048
ffdddd"""ccc[ddddllldddd]ccc333dddd]fff	chr1:55523044-55523262(+)$1	218	90	129	11.7646
dddccc[ccc!!eeeeennnnneeeee]ccc]ccc]ddd	chr17:66038919-66039151(+)$1	232	110	149	14.8878
ggggggg####eeeeeooooooeeeee55555ggggggg	chr6:70447736-70447984(-)$1	248	178	217	13.7887
[bb[abba[ccc[eeeeemmmmeeeee22ccc]a]bb]a	chr19:54377526-54377790(+)$1	264	76	115	12.4557
ccc[a"""dddd[ddddnnnnndddd]dddd333a]ccc	chr2:128886585-128886837(+)$1	252	115	154	14.5467
iiiiiiii"""ddddqqqqqqqqdddd333iiiiiiiii	chr9:75777634-75777877(+)$1	243	160	199	12.9657
g"""cccdddd[eeeeemmmmeeeee333dddd22ccc4	chr15:58938153-58938401(-)$1	248	152	191	13.1996
cc"""ccc!!eeeee[annnnna]eeeee]ccc333ccc	chr20:35835743-35835949(+)$1	206	97	136	15.3143
========[ddddrrrrrrrrrdddd==========333	chr10:73578701-73578960(-)$1	259	193	232	12.6925
gggg"""bb!!bb!!bbnnnnnbb]bb22bb333ggggg	chr19:47280169-47280390(-)$1	221	106	145	12.0623
===[bb[ccc!!eeeeemmmmeeeee22ccc]bb22===	chr6:150070930-150071184(+)$1	254	18	57	13.0283
naccccccdddd[eeeeemmmmeeeee333dddd]ccc:	chr12:53345802-53346128(+)$1	326	116	155	11.6746
ccc[bb"""ccc[ddddnnnnndddd]ccc333bb]ccc	chr2:220081347-220081657(-)$1	310	183	222	14.5533
eeeeeeee####eeeeennnnneeeee22eeeeeeeeee	chr1:181059133-181059415(+)$1	282	33	72	13.4931
fff[cccdddd[eeeeennnnneeeee]dddd]ccc]ff	chr19:581362-581597(+)$1	235	154	193	13.9126
ccc[eeeee"""ddddoooooodddd333eeeee]ccc:	chr11:63521076-63521280(+)$1	204	61	100	13.8227
a[ccc"""bb[eeeeeooooooeeeee22bbccc]a]dd	chr10:102116268-102116476(+)$1	208	30	69	14.9005
ccc[ccc!!ccceeeeennnnneeeee333ccc22cccc	chr11:88042229-88042485(-)$1	256	159	198	17.7992
gg!!ccc!!dddd[apppppppadddd22ccc333gggg	chr11:75280107-75280316(+)$1	209	73	112	11.4991

#otherMatches

#Seq PSSM
cguaguguguggugugugugucuaucuguACCAGCCUCA	chr19:3362427-3362750(+)$1	323	190	229	12.2475
CCACCUGUCCUCCAUGCCCUGAGGCAGAAAGGCAGCUGG	chr11:130785333-130785596(-)$1	263	18	57	14.0517
UGUCUGUUUCCAGGAAAAGGUCACCUGCAAGAACGGGCA	chr14:21269759-21270006(-)$1	247	30	69	13.9361
GGCAUCCUAUCCGCCAUACCAGGCAACGGGGCCACCAAA	chr11:18530988-18531250(-)$1	262	121	160	12.9881
UGUCCUCCCCAGAGCUCCUCCAAGUUCCCCCUGAUGACG	chr1:31211703-31211975(-)$1	272	54	93	11.7688
AAACCAAAAAGGUACUGUUUUCUAGUAUAUUCCUUCCAU	chr1:87368928-87369182(-)$1	254	208	247	11.7081
UUCUCCUUUUUAAACUGUUUUUCAGGGUUUGGAGAACAU	chrX:119010376-119010619(+)$1	243	75	114	12.4515
GCGUCCAGCGUGGGGGCAGCGGGCAUCCCUGCUGGAGGU	chr19:47280134-47280362(-)$1	228	9	48	11.9309
CGCUGAAGCGACAGGGACGCACUCUUUACGGCUUCGGUG	chr6:26285255-26285468(-)$1	213	9	48	18.2386
CAUUUACAUUUACACGAGUGGAACUGGGUGAAAAGGUAU	chr12:56524474-56524721(+)$1	247	200	239	11.3767
UCCAGCGGGUGAGGCUGGCCAGGGCCUGGGGGUGGGGGG	chr2:231740348-231740624(+)$1	276	167	206	15.1090
CCGGGACUGGUCAGAUGAACCCAUCAAAGAGUGCGGUGA	chr19:11218029-11218282(+)$1	253	126	165	11.6940
UAUUGUAAGAGAAUUUGUCUUUGCAGUUGCUCUAUAUGC	chr3:31663497-31663756(+)$1	259	65	104	11.4987
UCCUUGUUGAGAGAGGAAACCACUCCAAAAUCGUCGCAG	chrX:49029695-49029927(+)$1	232	94	133	15.9276
CUAUUGUAUUUGCCAGAGCACAUCUGGUAAGUGAAUAUA	chr8:29961857-29962103(+)$1	246	119	158	11.8761
GGAUCCUAAAUUGCAGCAAGGCUACAAUGCUAUGGGAUU	chr1:40557713-40557944(-)$1	231	168	207	13.3790
GGGGAGUCUGGGCGGCCCUAGGCUGAUCCUGCUUCUCUG	chr19:14675826-14676035(+)$1	209	8	47	14.4366
CUUUUCGCAAGUUGUAUCGUCUUAUAGAAAGGAAAAGUG	chr6:75968395-75968631(-)$1	236	46	85	13.8541
UAAUUAUGGAACCCAGCUCAAUGCUGUGAAUAACUCCCU	chr2:188348749-188349018(-)$1	269	94	133	13.2175
UGUUUGGUCUGGCUGGCCUUCUGCCUGCCAGCUACACGG	chr6:44198104-44198318(+)$1	214	6	45	12.6467
ACUGUCCCAAAGGAAGGGCAGUCAGUCCAGUGGUGGCAU	chr6:122768165-122768375(-)$1	210	18	57	11.9458
UUGGCCCAAGGCCCCCCUGUAAGGGCUCAGCUAGGUGUC	chr1:20982092-20982347(-)$1	255	20	59	12.5956
AUGUCAUCUACGAAGAAAACUGUUUUAAGUAUGUGUCAU	chr14:53133079-53133314(-)$1	235	194	233	14.5238
AUUGCUGACCCAAGAGGAAACACUCUAGGACGGGGAACG	chr12:104327839-104328109(+)$1	270	179	218	12.5066
AUUUUUCUCCAUUUCUAGGAUAAGAAGAAAGAGAAGAAA	chr12:50156555-50156779(+)$1	224	82	121	12.7473
GGCUUUACUGCAGUUUAUUUCUUAAUCUAUGCAGUACAC	chr13:100211593-100211838(+)$1	245	59	98	13.9336
AAAAAUUAUUGUGAAGACAUGCAUUUUAAAAAUAGUUUU	chr1:207958315-207958526(+)$1	211	170	209	17.2986
GGAGCUGCAGGCAGAAAUUCUUAUCUGGAAGUUCUUCUG	chr2:10928776-10928995(-)$1	219	99	138	11.3357
GAGAUCAGGGUCUUUGGUGCCCCGGAGGUUCUGGAGAAC	chr3:13363004-13363244(-)$1	240	115	154	12.3710
UGGGCAAAGGCAUGAAGGUAUUGCCCCAUCCUCUAGCCC	chr12:7295407-7295696(+)$1	289	198	237	11.1071
CCGCAGCGUGCAUGGGUGAGUGGCCCAGAGUAUAGUAUG	chr1:55319006-55319274(-)$1	268	153	192	12.4192
CAGGUGGGGGUGGGAGGCUUGGUUGCUGCCUUCAUUUCC	chr20:34142713-34142947(+)$1	234	161	200	13.6052
CUACGUUUACCCUCGAUGCUCUUGUUGAAUGUCUUGUGA	chr5:74642971-74643235(+)$1	264	103	142	14.0564
GUGCGCCUCAUCACCCUGGAGGAGGAGAUGACCAAGUAC	chr17:79804204-79804469(-)$1	265	51	90	11.9360
UUCACAGCAUGCUUGGGCUCAGCUCACAUUCUGGGAGGC	chr19:11455827-11456109(-)$1	282	136	175	14.1244
UGUGGUGACGCAGGGUGCCAGCCGCUUGGCCAGUCAUGA	chr15:89449763-89450016(-)$1	253	39	78	12.0177
CUUCCACCCCUUCCCAGCCCUACCUGAGAACGAAGGUGU	chr11:130005357-130005651(+)$1	294	218	257	13.6048
CACCUGCUUUGUGUCACAGAGUGGGACAUCACAGGCUGC	chr1:55523044-55523262(+)$1	218	90	129	11.7646
CAGUGUUCCGAGACUUGGUUAUUAAGUACGGUGCAGUUG	chr17:66038919-66039151(+)$1	232	110	149	14.8878
AAAUUGCCUUAUAAAACAAUUUUUUUACCUUAGUAAUUU	chr6:70447736-70447984(-)$1	248	178	217	13.7887
UCGAGAGAUGUAAGCUGCAGCCGCAGCCAUGCCUACUAC	chr19:54377526-54377790(+)$1	264	76	115	12.4557
UCCAGCCCUCUGAGGCAGACUAUGCCGUAGACAUCCGGA	chr2:128886585-128886837(+)$1	252	115	154	14.5467
UAGGAAAUGCCUCUUGUUUUAUAAAGACUAAUUucuuag	chr9:75777634-75777877(+)$1	243	160	199	12.9657
UUAUGAUUAUGCGCUAUUUUAGUAGUUCCCAUAUUGUUU	chr15:58938153-58938401(-)$1	248	152	191	13.1996
GCUAUCUUGCGGGUAAGACAUCCAUGCCCAAAGUGUGCC	chr20:35835743-35835949(+)$1	206	97	136	15.3143
UGGUCCUCUCGGGCAGCUGUAACCUGGGGGGCUGCAGAG	chr10:73578701-73578960(-)$1	259	193	232	12.6925
GUCAACCUCCCGGUCGACCAUAUCUCCUUGAUCCUGGCU	chr19:47280169-47280390(-)$1	221	106	145	12.0623
ugugggagguggUCUCACUCUUGGGAAAACUGCUGGGCA	chr6:150070930-150071184(+)$1	254	18	57	13.0283
ACAGCCUGAGGGAGGUGGAGGCCCGCUACGCCCUACAGA	chr12:53345802-53346128(+)$1	326	116	155	11.6746
AGGGAGUCCAGCUCUGCAGCUGGUGGUGCUCAUCUGCCU	chr2:220081347-220081657(-)$1	310	183	222	14.5533
CCCCCGGGCGCAUCUGGCUUAUCUGGAGACCUGGGAGCU	chr1:181059133-181059415(+)$1	282	33	72	13.4931
UGGCUGAGGUGCUGGUGCUGGUCACCAUCAUCUUCAUCU	chr19:581362-581597(+)$1	235	154	193	13.9126
ACUGCUCAUUUUCAGUGUCCCGAUUGUCUAUGAGAAGUA	chr11:63521076-63521280(+)$1	204	61	100	13.8227
CCUGGCUUGCUGAUGAUGUGCUUCAUCCUGCCCACGCUU	chr10:102116268-102116476(+)$1	208	30	69	14.9005
UCAAGCACACAUUUUAUCAUUAAUAAAAAUAUGAAUGCU	chr11:88042229-88042485(-)$1	256	159	198	17.7992
CCCAAGGGUGUGGUGGAGGUGACCCAUGACCUGCAGGUA	chr11:75280107-75280316(+)$1	209	73	112	11.4991

#DB
(((.(.(..(((((.(((....)))...)))))..).).	chr19:3362427-3362750(+)$1	1	190	229	12.2475
(((.(((.(((...((((....))))...)))))).)))	chr11:130785333-130785596(-)$1	1	18	57	14.0517
(((((((((.((((.........))))...)))))))))	chr14:21269759-21270006(-)$1	1	30	69	13.9361
(((.(((.....(((......)))...))))))...)))	chr11:18530988-18531250(-)$1	1	121	160	12.9881
.(((.((....(((((......))))).....)).)))(	chr1:31211703-31211975(-)$1	1	54	93	11.7688
)..((((.(((((((((.....)))))....))))...)	chr1:87368928-87369182(-)$1	1	208	247	11.7081
((((((.....(..(((.....)))..)..))))))(((	chrX:119010376-119010619(+)$1	1	75	114	12.4515
.(.(((((((.((((((.....)).))))))))))).))	chr19:47280134-47280362(-)$1	1	9	48	11.9309
(((((((((...(((((.....)))))...)))))))))	chr6:26285255-26285468(-)$1	1	9	48	18.2386
(((.(((.(((((.(.(((...))).))))))...))).	chr12:56524474-56524721(+)$1	1	200	239	11.3767
((((.(.....(((((......)))))...).)))))).	chr2:231740348-231740624(+)$1	1	167	206	15.1090
(((..(((.....((((....))))....))).)))).)	chr19:11218029-11218282(+)$1	1	126	165	11.6940
.((((((((((...((((....))))...))))...)))	chr3:31663497-31663756(+)$1	1	65	104	11.4987
((((((((((....(((......)))....)))..))))	chrX:49029695-49029927(+)$1	1	94	133	15.9276
.((((.(((((((((((.....)))))))))))))))..	chr8:29961857-29962103(+)$1	1	119	158	11.8761
((((((((.((((.(((...))).))))....)))))))	chr1:40557713-40557944(-)$1	1	168	207	13.3790
(((((((..((((((((...))))).))).)))))))))	chr19:14675826-14676035(+)$1	1	8	47	14.4366
((((((.....(((((......)))))....))))))))	chr6:75968395-75968631(-)$1	1	46	85	13.8541
...(((.(((..(((((.....)))).)......))).)	chr2:188348749-188349018(-)$1	1	94	133	13.2175
.((.(((.(((((.(((.....))).)))))))).))))	chr6:44198104-44198318(+)$1	1	6	45	12.6467
(.(((((((..(((..(.....)..)))..))).)))))	chr6:122768165-122768375(-)$1	1	18	57	11.9458
(((((....(((((........)))))..))))))))))	chr1:20982092-20982347(-)$1	1	20	59	12.5956
(((.(((.(((..((((.....))))..))).))).)))	chr14:53133079-53133314(-)$1	1	194	233	14.5238
((((((..(((.((((......)))).....)))..).)	chr12:104327839-104328109(+)$1	1	179	218	12.5066
)((((((((..(((((......)))))...)))))))).	chr12:50156555-50156779(+)$1	1	82	121	12.7473
((...(((((((..(((.....)))....)))))))..)	chr13:100211593-100211838(+)$1	1	59	98	13.9336
((((((((((...((((......))))...)))))))))	chr1:207958315-207958526(+)$1	1	170	209	17.2986
((((..((...((((........))))...)).))))))	chr2:10928776-10928995(-)$1	1	99	138	11.3357
(((.(((((((((((((....)))))))))))))....)	chr3:13363004-13363244(-)$1	1	115	154	12.3710
.((((..(((.(((..(((...))).))))))...))))	chr12:7295407-7295696(+)$1	1	198	237	11.1071
..(((((((((.(((((.....))))).......)))))	chr1:55319006-55319274(-)$1	1	153	192	12.4192
.((((((((((((.((......)).))))))))))))))	chr20:34142713-34142947(+)$1	1	161	200	13.6052
..(((...((..(((((......)))))..))..)))))	chr5:74642971-74643235(+)$1	1	103	142	14.0564
((((...(((((..(((.....))).)))))....))))	chr17:79804204-79804469(-)$1	1	51	90	11.9360
(((.(((.(((..(((((...)))))))).))).)))))	chr19:11455827-11456109(-)$1	1	136	175	14.1244
(((.(((((((.(((((.....))))).))..))))).)	chr15:89449763-89450016(-)$1	1	39	78	12.0177
....(((.(((((((((......))).)...))))).))	chr11:130005357-130005651(+)$1	1	218	257	13.6048
((((((...(((.((((...)))).)))...)))).)))	chr1:55523044-55523262(+)$1	1	90	129	11.7646
((((((.(((..(((((.....))))).))).))).)))	chr17:66038919-66039151(+)$1	1	110	149	14.8878
(((((((....(((((......))))).....)))))))	chr6:70447736-70447984(-)$1	1	178	217	13.7887
.((.((((.(((.(((((....)))))..))).).)).)	chr19:54377526-54377790(+)$1	1	76	115	12.4557
(((.(...((((.((((.....)))).))))...).)))	chr2:128886585-128886837(+)$1	1	115	154	14.5467
((((((((...((((........))))...)))))))))	chr9:75777634-75777877(+)$1	1	160	199	12.9657
(...(((((((.(((((....)))))...))))..))).	chr15:58938153-58938401(-)$1	1	152	191	13.1996
((...(((..(((((.(.....).))))).)))...)))	chr20:35835743-35835949(+)$1	1	97	136	15.3143
((((((((.((((.........))))))))))))))...	chr10:73578701-73578960(-)$1	1	193	232	12.6925
((((...((..((..((.....)).))..))...)))))	chr19:47280169-47280390(-)$1	1	106	145	12.0623
(((.((.(((..(((((....)))))..))).))..)))	chr6:150070930-150071184(+)$1	1	18	57	13.0283
.))))(((((((.(((((....)))))...)))).))).	chr12:53345802-53346128(+)$1	1	116	155	11.6746
(((.((...(((.((((.....)))).)))...)).)))	chr2:220081347-220081657(-)$1	1	183	222	14.5533
)))(((((....(((((.....)))))..)))))(((((	chr1:181059133-181059415(+)$1	1	33	72	13.4931
(((.(((((((.(((((.....))))).)))).))).))	chr19:581362-581597(+)$1	1	154	193	13.9126
(((.(((((...((((......))))...))))).))).	chr11:63521076-63521280(+)$1	1	61	100	13.8227
(.(((...((.(((((......)))))..))))).).))	chr10:102116268-102116476(+)$1	1	30	69	14.9005
(((.(((..((((((((.....)))))...)))..))))	chr11:88042229-88042485(-)$1	1	159	198	17.7992
((..(((..((((.(.......)))))..)))...))))	chr11:75280107-75280316(+)$1	1	73	112	11.4991

#PSSM
c : 0.12	f : 0.12	g : 0.12	= : 0.10	i : 0.08	d : 0.08	[ : 0.07	! : 0.05	h : 0.03	e : 0.03	: : 0.01	A : 0.01	$ : 0.01	" : 0.01	) : 0.01	# : 0.01	n : 0.01	a : 0.01	
c : 0.14	f : 0.14	= : 0.12	d : 0.10	g : 0.10	i : 0.08	a : 0.03	h : 0.03	" : 0.03	b : 0.03	[ : 0.03	e : 0.03	: : 0.01	) : 0.01	! : 0.01	# : 0.01	
c : 0.17	d : 0.14	= : 0.12	i : 0.10	f : 0.08	g : 0.08	" : 0.07	h : 0.03	b : 0.03	e : 0.03	: : 0.01	[ : 0.01	a : 0.01	# : 0.01	! : 0.01	
[ : 0.28	c : 0.10	d : 0.10	= : 0.10	i : 0.08	g : 0.08	f : 0.05	" : 0.05	! : 0.03	h : 0.03	# : 0.01	e : 0.01	
c : 0.28	= : 0.12	i : 0.08	d : 0.08	a : 0.07	" : 0.07	e : 0.05	[ : 0.03	f : 0.03	g : 0.03	! : 0.03	h : 0.03	b : 0.03	
c : 0.28	= : 0.10	i : 0.08	" : 0.08	b : 0.07	d : 0.05	g : 0.05	e : 0.05	[ : 0.03	f : 0.03	a : 0.03	h : 0.03	! : 0.03	# : 0.01	
c : 0.26	= : 0.12	" : 0.12	i : 0.08	b : 0.05	$ : 0.05	g : 0.05	[ : 0.05	e : 0.05	! : 0.03	a : 0.01	d : 0.01	f : 0.01	# : 0.01	h : 0.01	
c : 0.16	[ : 0.12	! : 0.08	i : 0.08	= : 0.08	" : 0.08	$ : 0.07	e : 0.07	# : 0.05	d : 0.05	g : 0.03	b : 0.03	h : 0.01	a : 0.01	
c : 0.17	d : 0.10	e : 0.10	! : 0.08	$ : 0.08	# : 0.07	= : 0.07	" : 0.07	i : 0.05	[ : 0.05	b : 0.05	g : 0.03	h : 0.01	
c : 0.24	d : 0.16	e : 0.10	$ : 0.08	" : 0.07	= : 0.07	! : 0.07	# : 0.05	b : 0.05	g : 0.03	[ : 0.01	i : 0.01	
d : 0.17	c : 0.16	e : 0.12	! : 0.12	$ : 0.08	" : 0.08	# : 0.07	[ : 0.05	= : 0.05	g : 0.01	i : 0.01	b : 0.01	
e : 0.23	d : 0.17	c : 0.12	! : 0.10	" : 0.08	[ : 0.08	= : 0.05	$ : 0.03	# : 0.03	a : 0.01	g : 0.01	b : 0.01	
e : 0.42	d : 0.16	! : 0.08	[ : 0.08	" : 0.05	c : 0.05	= : 0.05	$ : 0.01	# : 0.01	a : 0.01	b : 0.01	
e : 0.42	d : 0.23	[ : 0.08	! : 0.07	c : 0.05	" : 0.03	= : 0.03	# : 0.01	a : 0.01	r : 0.01	
e : 0.39	d : 0.24	c : 0.14	! : 0.05	r : 0.03	a : 0.03	= : 0.03	[ : 0.01	q : 0.01	b : 0.01	
e : 0.37	d : 0.19	c : 0.14	b : 0.05	q : 0.05	r : 0.03	[ : 0.03	= : 0.03	! : 0.03	o : 0.01	p : 0.01	
e : 0.26	c : 0.17	o : 0.17	d : 0.16	q : 0.05	r : 0.03	b : 0.03	= : 0.03	a : 0.03	p : 0.01	
n : 0.37	o : 0.24	m : 0.07	c : 0.05	l : 0.05	q : 0.05	e : 0.05	d : 0.03	r : 0.03	p : 0.01	
n : 0.37	o : 0.24	m : 0.16	l : 0.07	q : 0.05	r : 0.03	c : 0.03	p : 0.01	
n : 0.37	o : 0.24	m : 0.16	l : 0.10	q : 0.05	r : 0.03	p : 0.01	
n : 0.37	o : 0.24	m : 0.16	l : 0.05	q : 0.05	r : 0.03	c : 0.01	e : 0.01	d : 0.01	p : 0.01	
n : 0.37	o : 0.23	m : 0.08	e : 0.07	q : 0.05	r : 0.03	c : 0.03	l : 0.03	d : 0.03	= : 0.01	p : 0.01	
e : 0.37	d : 0.19	c : 0.16	o : 0.07	b : 0.05	a : 0.05	= : 0.03	q : 0.03	r : 0.01	
e : 0.39	d : 0.28	c : 0.17	b : 0.05	= : 0.03	] : 0.03	2 : 0.01	
e : 0.41	d : 0.28	c : 0.16	] : 0.07	= : 0.03	3 : 0.01	2 : 0.01	
e : 0.39	d : 0.28	] : 0.08	c : 0.07	= : 0.05	3 : 0.03	4 : 0.03	2 : 0.01	b : 0.01	
e : 0.37	d : 0.12	3 : 0.10	c : 0.08	= : 0.07	] : 0.07	2 : 0.05	4 : 0.05	a : 0.01	5 : 0.01	b : 0.01	
3 : 0.24	2 : 0.14	c : 0.12	4 : 0.08	e : 0.08	= : 0.07	5 : 0.05	a : 0.05	d : 0.05	] : 0.05	7 : 0.01	
3 : 0.26	2 : 0.16	c : 0.14	4 : 0.10	e : 0.08	= : 0.07	5 : 0.05	d : 0.05	6 : 0.01	7 : 0.01	b : 0.01	
3 : 0.19	c : 0.17	e : 0.10	= : 0.08	4 : 0.07	d : 0.07	5 : 0.05	2 : 0.05	] : 0.05	b : 0.05	g : 0.03	6 : 0.01	7 : 0.01	
c : 0.24	= : 0.12	e : 0.10	d : 0.08	b : 0.07	i : 0.05	5 : 0.05	4 : 0.05	3 : 0.05	g : 0.03	f : 0.01	a : 0.01	6 : 0.01	h : 0.01	7 : 0.01	2 : 0.01	
c : 0.24	= : 0.12	d : 0.10	e : 0.08	] : 0.07	i : 0.05	3 : 0.05	5 : 0.03	g : 0.03	4 : 0.03	h : 0.03	b : 0.03	f : 0.01	6 : 0.01	7 : 0.01	2 : 0.01	
c : 0.21	= : 0.12	3 : 0.10	e : 0.08	d : 0.08	i : 0.07	] : 0.07	g : 0.05	b : 0.03	f : 0.03	h : 0.03	6 : 0.01	7 : 0.01	2 : 0.01	4 : 0.01	
3 : 0.14	c : 0.12	= : 0.10	2 : 0.08	d : 0.08	i : 0.07	g : 0.07	e : 0.07	b : 0.05	f : 0.03	h : 0.03	] : 0.03	6 : 0.01	7 : 0.01	4 : 0.01	a : 0.01	
2 : 0.10	c : 0.10	3 : 0.10	] : 0.10	g : 0.10	i : 0.08	d : 0.08	= : 0.08	e : 0.05	f : 0.03	h : 0.03	4 : 0.03	a : 0.01	b : 0.01	
c : 0.16	g : 0.12	] : 0.10	= : 0.10	i : 0.08	d : 0.08	3 : 0.07	e : 0.05	a : 0.03	f : 0.03	h : 0.03	b : 0.03	2 : 0.03	4 : 0.01	
c : 0.21	i : 0.10	d : 0.10	= : 0.10	] : 0.08	g : 0.08	f : 0.07	e : 0.05	3 : 0.03	h : 0.03	b : 0.03	a : 0.01	2 : 0.01	4 : 0.01	
c : 0.21	i : 0.10	d : 0.10	f : 0.08	] : 0.08	= : 0.08	g : 0.08	a : 0.03	3 : 0.03	h : 0.03	e : 0.03	6 : 0.01	2 : 0.01	4 : 0.01	b : 0.01	
c : 0.16	f : 0.12	d : 0.12	i : 0.10	g : 0.10	= : 0.08	a : 0.05	: : 0.05	] : 0.03	3 : 0.03	e : 0.03	6 : 0.01	h : 0.01	b : 0.01	4 : 0.01	

#score	744.8304327865318
#seq	56
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_transcript_m2_run2.txt

#BEAR
===========nnnnn============5	chr4:144106164-144106394(+)$1	230	117	146	10.2198
FFdddd"""cccmmmmccc333dddd::b	chr8:41660835-41661066(+)$1	231	48	77	8.9630
ee[eeeeeddddmmmmdddd22eeeee33	chr15:75275613-75275817(-)$1	204	128	157	10.1447
===========lll===========:fff	chrX:64905275-64905484(+)$1	209	45	74	9.6296
fffff####cccmmmmccc]ffffffbb[	chr10:128609262-128609473(+)$1	211	68	97	10.3251
!!dddd!!ddddllldddd333ddddeee	chr9:37160092-37160333(+)$1	241	77	106	9.2937
fffiiiiiiiiimmmmiiiiiiiii333f	chr14:68083928-68084151(-)$1	223	166	195	11.8171
gggggg"""aooooooa22ggggggg333	chr4:158689064-158689303(-)$1	239	171	200	10.7216
[bb"""a[ddddmmmmdddd]a]bb]bb2	chr9:139760553-139760830(-)$1	277	184	213	9.8109
!!ddddbb[cccmmmmccc]bb]dddd33	chr1:185226949-185227169(-)$1	220	36	65	10.3141
d!!dddd!!cccmmmmccc22dddd22dd	chr6:106868499-106868726(+)$1	227	105	134	11.2913
##iiiiiiiiinnnnniiiiiiiii4444	chr6:74227976-74228204(-)$1	228	182	211	9.9704
""eeeee[a[bbmmmmbb]a]eeeeeddd	chr6:33377416-33377725(+)$1	309	120	149	9.2729
d!!dddd!!cccmmmmccc22dddd22dd	chr20:23438142-23438353(-)$1	211	55	84	11.2913
eggggggg[a[ammmmaaggggggg]eee	chr22:38864146-38864387(+)$1	241	198	227	11.8853
========[cccooooooccc]=======	chr1:28748967-28749199(-)$1	232	183	212	12.0229
ggggggg[eeeeellleeeee]ggggggg	chr7:148660358-148660600(+)$1	242	80	109	9.5440
eee[bb!!ddddmmmmdddd22bbeeeee	chr13:100215258-100215540(+)$1	282	7	36	9.7817
============mmmm=============	chr17:27188317-27188542(-)$1	225	106	135	13.4155
!!dddd!!cccbbmmmmbb22ccc>>>>>	chr20:431273-431491(+)$1	218	104	133	8.8455
"bb[bb"""cccmmmmccc]bb]bb4444	chr17:4880247-4880504(-)$1	257	152	181	10.6145
bb[eeeee[cccmmmmccc]eeeee]bb:	chr21:33755670-33755927(-)$1	257	58	87	9.4418
ff"""gggggggmmmmggggggg22ffff	chr2:128556462-128556687(-)$1	225	77	106	10.2768
gggg[gggggggmmmmggggggg>>>>>>	chr5:122846033-122846243(-)$1	210	15	44	10.8404
d####ccc[cccmmmmccc]ccc4444dd	chr2:25231617-25231852(-)$1	235	61	90	11.9018
####eeeee[bbmmmmbb]eeeee333ff	chr21:46285982-46286245(-)$1	263	140	169	9.2804
ggggggg[eeeeellleeeee]ggggggg	chr10:54612302-54612536(+)$1	234	96	125	9.5440
%ccc[ccc[cccmmmmccc]cccccc===	chr2:132249347-132249629(-)$1	282	120	149	11.4782
dddd[ccc[cccmmmmccc22ccc]dddd	chr22:20110918-20111166(+)$1	248	123	152	11.2670
e####ccc[cccmmmmccc]ccc22eeee	chr10:76311110-76311358(+)$1	248	179	208	11.4322
d!!bb"""ddddmmmmdddd22bb22ddd	chr6:31832515-31832770(-)$1	255	225	254	10.1322
eggggggg[bboooooobb22ggggggg3	chr5:64018253-64018463(-)$1	210	104	133	10.5442
ddiiiiiiiiiooooooiiiiiiiii]dd	chr6:4116015-4116258(-)$1	243	169	198	10.4114
cceeeee[ddddmmmmddddeeeee]ccc	chr12:56705012-56705257(-)$1	245	42	71	9.7102
ee[eeeee[cccmmmmccc]eeeee]eee	chr10:21770594-21770839(+)$1	245	74	103	11.0081
===!!gggggggmmmmggggggg22====	chr1:17484671-17484877(+)$1	206	29	58	11.7584
iiiiiii####ammmma4444iiiiiiii	chr17:40646249-40646468(+)$1	219	138	167	12.3901
======"""cccmmmmccc333=======	chrX:117048198-117048420(-)$1	222	43	72	14.6011
gggg[gggggggmmmmggggggg>>>>>>	chr5:122846043-122846265(-)$1	222	37	66	10.8404
eggggggg[bboooooobb22ggggggg3	chr5:64018211-64018431(-)$1	220	72	101	10.5442
ggggggg[eeeeellleeeee]ggggggg	chr17:41084831-41085035(-)$1	204	108	137	9.5440
c[ffffff[cccmmmmccc]ffffff]cc	chr22:22221752-22221964(-)$1	212	122	151	10.5922
ggggg[ddddoooooodddd22ggggggg	chr18:12760710-12760914(+)$1	204	133	162	10.0183
d!!bb[ccc[ccclllccc333ccc]bb2	chr6:29718112-29718348(+)$1	236	184	213	10.2891
eee[ccc!!bbammmma]bb22ccceeee	chr4:84406090-84406327(-)$1	237	65	94	10.3300
hggggggg[aooooooa]gggggggffff	chr7:148638519-148638729(+)$1	210	134	163	9.9204
d[ccc"""ddddmmmmdddd22ccc]ddd	chr2:233987455-233987696(+)$1	241	82	111	11.1355
[dddd[bb[cccmmmmccc]bbdddd]hh	chr9:130551963-130552204(+)$1	241	35	64	9.5285
=========cccooooooccc]=======	chr3:101177334-101177569(+)$1	235	31	60	11.7971
ggggg[ddddoooooodddd22ggggggg	chr18:12760678-12760898(+)$1	220	165	194	10.0183
dddd####ddddmmmmdddd4444dddd2	chr13:100215249-100215458(+)$1	209	117	146	9.8702
============mmmm============:	chrX:114373493-114373696(-)$1	203	108	137	12.4283
eee"""ccc[bbmmmmbb333ccc>>>>>	chrX:85274599-85274817(+)$1	218	142	171	10.1785
ggggg####ddddllldddd22ggggggg	chr12:120600773-120601011(-)$1	238	128	157	10.6723
ggggggg[eeeeellleeeee]ggggggg	chr17:41084856-41085059(-)$1	203	132	161	9.5440
%ccc[ccc[cccmmmmccc]cccccc===	chr2:130940170-130940445(+)$1	275	117	146	11.4782

#otherMatches

#Seq PSSM
GCUGGGGGGCCCGACAGGCCCCUCGGCGC	chr4:144106164-144106394(+)$1	230	117	146	10.2198
ugauguuuacaacuaauuggucacauuca	chr8:41660835-41661066(+)$1	231	48	77	8.9630
aguauuugauuauaacuaguuacagauuu	chr15:75275613-75275817(-)$1	204	128	157	10.1447
GUGUGUGUUUGUGAUAGGCACAUGCUUUU	chrX:64905275-64905484(+)$1	209	45	74	9.6296
cuucucuuaggugugcacccagaagaagu	chr10:128609262-128609473(+)$1	211	68	97	10.3251
ucacaaccagucacggauuucuuuguucc	chr9:37160092-37160333(+)$1	241	77	106	9.2937
GCAGUGGCUCAUGCCUAugagccaugauu	chr14:68083928-68084151(-)$1	223	166	195	11.8171
CCAGAAUUUCUACCAUGUCUUCUGGCUGA	chr4:158689064-158689303(-)$1	239	171	200	10.7216
CCAAAUCCAAGCAGGUGCUUUGCUGACUG	chr9:139760553-139760830(-)$1	277	184	213	9.8109
uaguggcauuuacaacuaauugaccacaa	chr1:185226949-185227169(-)$1	220	36	65	10.3141
uacaacuaauugaucacaaccaguuacag	chr6:106868499-106868726(+)$1	227	105	134	11.2913
UUGGAUUUGCACUGAAUGCAAAUCUUUUU	chr6:74227976-74228204(-)$1	228	182	211	9.9704
UGUCUAUGUAUCGGGUGAGGGGUGGGAGG	chr6:33377416-33377725(+)$1	309	120	149	9.2729
uacaacuuauugaucacaaacaguuacag	chr20:23438142-23438353(-)$1	211	55	84	11.2913
CAGGGAGGUGCGGGACCCCCUCUCUGGCC	chr22:38864146-38864387(+)$1	241	198	227	11.8853
caagggggauuuguuccaggacucuccuu	chr1:28748967-28749199(-)$1	232	183	212	12.0229
uauuaacauuagugucacuaaaguuggua	chr7:148660358-148660600(+)$1	242	80	109	9.5440
AUGUGCAUUUGUAAAUACAGUAGCUAUAA	chr13:100215258-100215540(+)$1	282	7	36	9.7817
UUACCAUUACUGAGUUUAGUAAUGGUAAU	chr17:27188317-27188542(-)$1	225	106	135	13.4155
cgcccacugcuucacuugacuagccuuCA	chr20:431273-431491(+)$1	218	104	133	8.8455
GUGAGUACCCAGCCCUCUGAACCCAAGUA	chr17:4880247-4880504(-)$1	257	152	181	10.6145
GUGCAGGUUGGCUCGCGCCUGCCUGAGCC	chr21:33755670-33755927(-)$1	257	58	87	9.4418
GUGAGUUUGACCUUGUGGUUAGAAAGCUA	chr2:128556462-128556687(-)$1	225	77	106	10.2768
uggucuaaguacggugguacuuacaacga	chr5:122846033-122846243(-)$1	210	15	44	10.8404
uacaccuaauugauaacaacuaguuucag	chr2:25231617-25231852(-)$1	235	61	90	11.9018
GCAGUCAGCUUGGUUGCAUGUUGGAAGUU	chr21:46285982-46286245(-)$1	263	140	169	9.2804
uacuaacauuagugucacuaaaguuggua	chr10:54612302-54612536(+)$1	234	96	125	9.5440
AGCGAGCCCCAGGACCCUGCGGCCGUGUC	chr2:132249347-132249629(-)$1	282	120	149	11.4782
UUCGGGCAGUGUAAGAGCAGAUGUGUGAG	chr22:20110918-20111166(+)$1	248	123	152	11.2670
caaaauugaggaccuuuccccagaagaca	chr10:76311110-76311358(+)$1	248	179	208	11.4322
ACCCAAUAACCCCAACGGGUCAUGUCUUC	chr6:31832515-31832770(-)$1	255	225	254	10.1322
UGCAGUGGUGUuucuuuacucccacugcu	chr5:64018253-64018463(-)$1	210	104	133	10.5442
AAAGCAUGUCCAAGGAAGGAUGUGCUGUU	chr6:4116015-4116258(-)$1	243	169	198	10.4114
GCUGAGGACAUUUCUAGGUGCCUUAUGCC	chr12:56705012-56705257(-)$1	245	42	71	9.7102
ugcaacugauugauuacaacuaguuacag	chr10:21770594-21770839(+)$1	245	74	103	11.0081
uaaaaguuuguguaaaUacaagcaguuau	chr1:17484671-17484877(+)$1	206	29	58	11.7584
CUGUGAUGUUUGGAGACUUCGGUCAUGGC	chr17:40646249-40646468(+)$1	219	138	167	12.3901
GGAGUUCCCCAAAUUUUUGCCAGAUUUCU	chrX:117048198-117048420(-)$1	222	43	72	14.6011
uggucuaaguacggugguacuuacaacga	chr5:122846043-122846265(-)$1	222	37	66	10.8404
UGCAGUGGUGUuucuuuacucccacugcu	chr5:64018211-64018431(-)$1	220	72	101	10.5442
uauuaacauuagugucacuaaaguuggua	chr17:41084831-41085035(-)$1	204	108	137	9.5440
GCGGCUGCACCGGCGGCGGCGCAGUCCCU	chr22:22221752-22221964(-)$1	212	122	151	10.5922
CAggccgggcgcgguggcucacgccugua	chr18:12760710-12760914(+)$1	204	133	162	10.0183
uugugauuaugcuaaaagccacugaccag	chr6:29718112-29718348(+)$1	236	184	213	10.2891
GCCCUCGUCCUCUUGUGUAGCCUGAGGCG	chr4:84406090-84406327(-)$1	237	65	94	10.3300
uugcuguuuuGCACUAAUAACAGUAGUAG	chr7:148638519-148638729(+)$1	210	134	163	9.9204
gaaaGAGACAGUAAAGacugaacuuccuc	chr2:233987455-233987696(+)$1	241	82	111	11.1355
GAGGGCACUGGAGCUGUCUUGUCCUUGCU	chr9:130551963-130552204(+)$1	241	35	64	9.5285
GCAUUUUUggcuggcccaaguacagaggu	chr3:101177334-101177569(+)$1	235	31	60	11.7971
CAggccgggcgcgguggcucacgccugua	chr18:12760678-12760898(+)$1	220	165	194	10.0183
AUUGUAAAUAGGAUUUUCUAGGCUCGGUA	chr13:100215249-100215458(+)$1	209	117	146	9.8702
uauguauauguauauguauauguacauAA	chrX:114373493-114373696(-)$1	203	108	137	12.4283
CAUAGUUACAGCAAUAGCACAGUAUAGUA	chrX:85274599-85274817(+)$1	218	142	171	10.1785
CCAUCCUUAGGUCCGUGGCUGCGGUGGGU	chr12:120600773-120601011(-)$1	238	128	157	10.6723
uauuaacauuagugucacuaaaguuggua	chr17:41084856-41085059(-)$1	203	132	161	9.5440
AGCGAGCCCCAGGACCCUGCGGCCGUGUC	chr2:130940170-130940445(+)$1	275	117	146	11.4782

#DB
(((((((((((.....)))))))))))).	chr4:144106164-144106394(+)$1	1	117	146	10.2198
((((((...(((....)))...))))..(	chr8:41660835-41661066(+)$1	1	48	77	8.9630
((.(((((((((....))))..)))))..	chr15:75275613-75275817(-)$1	1	128	157	10.1447
(((((((((((...))))))))))).(((	chrX:64905275-64905484(+)$1	1	45	74	9.6296
(((((....(((....))).))))))((.	chr10:128609262-128609473(+)$1	1	68	97	10.3251
..((((..((((...))))...)))))))	chr9:37160092-37160333(+)$1	1	77	106	9.2937
((((((((((((....)))))))))...)	chr14:68083928-68084151(-)$1	1	166	195	11.8171
((((((...(......)..)))))))...	chr4:158689064-158689303(-)$1	1	171	200	10.7216
.((...(.((((....)))).).)).)).	chr9:139760553-139760830(-)$1	1	184	213	9.8109
..((((((.(((....))).)).))))..	chr1:185226949-185227169(-)$1	1	36	65	10.3141
(..((((..(((....)))..))))..))	chr6:106868499-106868726(+)$1	1	105	134	11.2913
..(((((((((.....)))))))))....	chr6:74227976-74228204(-)$1	1	182	211	9.9704
..(((((.(.((....)).).))))))))	chr6:33377416-33377725(+)$1	1	120	149	9.2729
(..((((..(((....)))..))))..))	chr20:23438142-23438353(-)$1	1	55	84	11.2913
((((((((.(.(....))))))))).)))	chr22:38864146-38864387(+)$1	1	198	227	11.8853
((((((((.(((......))).)))))))	chr1:28748967-28749199(-)$1	1	183	212	12.0229
(((((((.(((((...))))).)))))))	chr7:148660358-148660600(+)$1	1	80	109	9.5440
(((.((..((((....))))..)))))))	chr13:100215258-100215540(+)$1	1	7	36	9.7817
((((((((((((....)))))))))))))	chr17:27188317-27188542(-)$1	1	106	135	13.4155
..((((..(((((....))..))).....	chr20:431273-431491(+)$1	1	104	133	8.8455
.((.((...(((....))).)).))....	chr17:4880247-4880504(-)$1	1	152	181	10.6145
((.(((((.(((....))).))))).)).	chr21:33755670-33755927(-)$1	1	58	87	9.4418
((...(((((((....)))))))..))))	chr2:128556462-128556687(-)$1	1	77	106	10.2768
((((.(((((((....)))))))......	chr5:122846033-122846243(-)$1	1	15	44	10.8404
(....(((.(((....))).)))....))	chr2:25231617-25231852(-)$1	1	61	90	11.9018
....(((((.((....)).)))))...))	chr21:46285982-46286245(-)$1	1	140	169	9.2804
(((((((.(((((...))))).)))))))	chr10:54612302-54612536(+)$1	1	96	125	9.5440
.(((.(((.(((....))).)))))))))	chr2:132249347-132249629(-)$1	1	120	149	11.4782
((((.(((.(((....)))..))).))))	chr22:20110918-20111166(+)$1	1	123	152	11.2670
(....(((.(((....))).)))..))))	chr10:76311110-76311358(+)$1	1	179	208	11.4322
(..((...((((....))))..))..)))	chr6:31832515-31832770(-)$1	1	225	254	10.1322
((((((((.((......))..))))))).	chr5:64018253-64018463(-)$1	1	104	133	10.5442
(((((((((((......))))))))).))	chr6:4116015-4116258(-)$1	1	169	198	10.4114
(((((((.((((....))))))))).)))	chr12:56705012-56705257(-)$1	1	42	71	9.7102
((.(((((.(((....))).))))).)))	chr10:21770594-21770839(+)$1	1	74	103	11.0081
(((..(((((((....)))))))..))))	chr1:17484671-17484877(+)$1	1	29	58	11.7584
(((((((....(....)....))))))))	chr17:40646249-40646468(+)$1	1	138	167	12.3901
((((((...(((....)))...)))))))	chrX:117048198-117048420(-)$1	1	43	72	14.6011
((((.(((((((....)))))))......	chr5:122846043-122846265(-)$1	1	37	66	10.8404
((((((((.((......))..))))))).	chr5:64018211-64018431(-)$1	1	72	101	10.5442
(((((((.(((((...))))).)))))))	chr17:41084831-41085035(-)$1	1	108	137	9.5440
(.((((((.(((....))).)))))).))	chr22:22221752-22221964(-)$1	1	122	151	10.5922
(((((.((((......))))..)))))))	chr18:12760710-12760914(+)$1	1	133	162	10.0183
(..((.(((.(((...)))...))).)).	chr6:29718112-29718348(+)$1	1	184	213	10.2891
(((.(((..(((....).))..)))))))	chr4:84406090-84406327(-)$1	1	65	94	10.3300
)(((((((.(......).)))))))((((	chr7:148638519-148638729(+)$1	1	134	163	9.9204
(.(((...((((....))))..))).)))	chr2:233987455-233987696(+)$1	1	82	111	11.1355
.((((.((.(((....))).)))))).))	chr9:130551963-130552204(+)$1	1	35	64	9.5285
((((((((((((......))).)))))))	chr3:101177334-101177569(+)$1	1	31	60	11.7971
(((((.((((......))))..)))))))	chr18:12760678-12760898(+)$1	1	165	194	10.0183
((((....((((....))))....)))).	chr13:100215249-100215458(+)$1	1	117	146	9.8702
((((((((((((....)))))))))))).	chrX:114373493-114373696(-)$1	1	108	137	12.4283
(((...(((.((....))...))).....	chrX:85274599-85274817(+)$1	1	142	171	10.1785
(((((....((((...))))..)))))))	chr12:120600773-120601011(-)$1	1	128	157	10.6723
(((((((.(((((...))))).)))))))	chr17:41084856-41085059(-)$1	1	132	161	9.5440
.(((.(((.(((....))).)))))))))	chr2:130940170-130940445(+)$1	1	117	146	11.4782

#PSSM
g : 0.17	e : 0.16	d : 0.16	= : 0.14	f : 0.05	! : 0.05	[ : 0.03	# : 0.03	" : 0.03	% : 0.03	c : 0.03	F : 0.01	b : 0.01	i : 0.01	h : 0.01	
g : 0.24	= : 0.14	! : 0.12	e : 0.08	# : 0.07	d : 0.07	f : 0.05	b : 0.05	c : 0.05	[ : 0.03	F : 0.01	" : 0.01	i : 0.01	
g : 0.24	= : 0.14	d : 0.12	e : 0.08	! : 0.07	[ : 0.05	f : 0.05	i : 0.05	# : 0.05	c : 0.05	b : 0.03	" : 0.01	
g : 0.24	d : 0.16	= : 0.12	e : 0.08	i : 0.07	" : 0.05	[ : 0.05	# : 0.05	c : 0.05	f : 0.03	b : 0.03	! : 0.01	
g : 0.21	= : 0.12	d : 0.12	e : 0.10	[ : 0.08	i : 0.07	b : 0.07	" : 0.05	# : 0.05	f : 0.03	c : 0.03	! : 0.01	
g : 0.23	= : 0.12	d : 0.10	e : 0.10	c : 0.10	i : 0.07	" : 0.07	[ : 0.07	# : 0.05	b : 0.03	f : 0.01	
g : 0.21	c : 0.14	= : 0.10	" : 0.10	e : 0.10	i : 0.07	d : 0.07	# : 0.05	! : 0.05	b : 0.03	a : 0.01	f : 0.01	
g : 0.14	[ : 0.12	c : 0.12	= : 0.10	" : 0.10	! : 0.10	e : 0.07	# : 0.07	i : 0.05	b : 0.03	d : 0.03	f : 0.01	
[ : 0.26	d : 0.17	= : 0.08	e : 0.08	" : 0.07	g : 0.07	# : 0.05	i : 0.05	! : 0.05	c : 0.05	a : 0.01	
c : 0.33	d : 0.19	= : 0.07	[ : 0.07	e : 0.07	g : 0.07	i : 0.05	a : 0.05	b : 0.05	# : 0.01	
c : 0.35	d : 0.16	b : 0.10	= : 0.07	o : 0.07	e : 0.07	g : 0.07	i : 0.05	[ : 0.01	# : 0.01	
c : 0.33	d : 0.16	o : 0.12	b : 0.07	e : 0.07	g : 0.07	a : 0.05	n : 0.03	= : 0.03	l : 0.01	i : 0.01	
m : 0.64	o : 0.16	e : 0.07	n : 0.03	l : 0.03	b : 0.01	c : 0.01	d : 0.01	
m : 0.66	o : 0.16	l : 0.14	n : 0.03	
m : 0.66	o : 0.16	l : 0.12	n : 0.03	= : 0.01	
m : 0.66	o : 0.16	l : 0.10	n : 0.03	= : 0.01	d : 0.01	
c : 0.30	d : 0.19	a : 0.08	o : 0.08	= : 0.07	e : 0.07	g : 0.07	b : 0.05	i : 0.03	m : 0.01	
c : 0.30	d : 0.19	b : 0.10	= : 0.07	e : 0.07	g : 0.07	i : 0.05	o : 0.03	] : 0.03	2 : 0.01	a : 0.01	4 : 0.01	
c : 0.33	d : 0.19	g : 0.10	= : 0.07	e : 0.07	b : 0.07	i : 0.05	] : 0.03	2 : 0.01	4 : 0.01	3 : 0.01	
] : 0.19	d : 0.17	g : 0.12	2 : 0.10	3 : 0.08	e : 0.08	= : 0.07	i : 0.05	c : 0.03	a : 0.01	4 : 0.01	b : 0.01	
2 : 0.24	e : 0.14	g : 0.12	c : 0.10	3 : 0.08	= : 0.07	i : 0.05	b : 0.05	f : 0.03	] : 0.03	4 : 0.03	
g : 0.16	2 : 0.14	c : 0.12	] : 0.10	e : 0.08	= : 0.07	3 : 0.07	i : 0.07	b : 0.05	f : 0.03	d : 0.03	a : 0.01	4 : 0.01	
g : 0.28	c : 0.17	= : 0.12	e : 0.10	d : 0.08	i : 0.07	] : 0.05	f : 0.03	b : 0.03	4 : 0.01	
g : 0.21	c : 0.14	= : 0.12	d : 0.10	e : 0.10	i : 0.07	b : 0.07	2 : 0.05	f : 0.03	> : 0.03	4 : 0.03	
g : 0.21	= : 0.12	d : 0.12	e : 0.10	c : 0.08	i : 0.07	> : 0.07	2 : 0.07	f : 0.03	b : 0.03	4 : 0.01	3 : 0.01	] : 0.01	
g : 0.17	= : 0.12	] : 0.12	d : 0.10	e : 0.08	f : 0.07	> : 0.07	2 : 0.05	4 : 0.05	3 : 0.03	c : 0.03	i : 0.03	: : 0.01	
= : 0.16	g : 0.16	e : 0.12	d : 0.10	b : 0.07	> : 0.07	f : 0.05	3 : 0.05	4 : 0.05	] : 0.05	2 : 0.03	: : 0.01	c : 0.01	i : 0.01	
= : 0.16	d : 0.16	g : 0.16	e : 0.10	3 : 0.07	f : 0.07	b : 0.07	> : 0.07	4 : 0.03	c : 0.03	: : 0.01	i : 0.01	h : 0.01	
d : 0.14	= : 0.12	g : 0.12	e : 0.10	3 : 0.08	f : 0.08	> : 0.07	2 : 0.05	4 : 0.03	: : 0.03	c : 0.03	5 : 0.01	b : 0.01	[ : 0.01	i : 0.01	h : 0.01	

#score	593.9251373625947
#seq	56
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_transcript_m1_run2.txt

#BEAR
eee!!dddd[cccddddmmmmdddd22ccc]ddddee	chr1:22174217-22174433(-)$1	216	129	166	11.7019
gggccc####ccc[ddddmmmmdddd]ccc4444ccc	chr19:34890584-34890790(+)$1	206	20	57	10.8985
iiiiiiiii!!a[cccmmmmccc]a22iiiiiiiii]	chr19:1037674-1037926(+)$1	252	143	180	12.8384
f[ccc[ccc[eeeeeooooooeeeee]cccccc]fff	chr1:36808884-36809142(-)$1	258	14	51	13.7346
[ggggggg####bboooooobb4444ggggggg]ccc	chr19:49469792-49470014(+)$1	222	174	211	13.5549
f"""dddd"""cccmmmmcccdddd22ffffffbb33	chr2:96951953-96952166(-)$1	213	111	148	11.2844
cc[ggggggg[ddddnnnnndddd333gggggggccc	chr19:50270300-50270557(+)$1	257	130	167	14.4264
4444gggggggddddooooooddddbb!!eeeee[cc	chr3:53276116-53276359(-)$1	243	105	142	11.8959
iiiiieeeee[ddddnnnnnddddeeeee22iiiiii	chr13:92001092-92001366(+)$1	274	188	225	12.1554
$$$bb[ddddbbcccooooooccc333bb]dddd333	chr17:79477924-79478193(-)$1	269	164	201	12.8274
ddd"""ccc"""cccooooooccc333ccc22ddddf	chr19:56598708-56598980(-)$1	272	106	143	16.2540
c[bbccc####ddddoooooodddd22ccc]bb]ccc	chr17:75484727-75485050(+)$1	323	157	194	18.0638
""dddd[ddddddddoooooodddd]dddd22dddd3	chr17:46703598-46703849(-)$1	251	16	53	13.6357
"""cccdddd[cccmmmmcccdddd22ccc22eeeee	chr2:127413637-127413890(+)$1	253	164	201	11.1896
d[bb!!a[gggggggooooooggggggg]a22bb]dd	chr20:32883100-32883341(-)$1	241	171	208	12.8295
d[a!!a!!dddd[bboooooobb]dddd]a22adddd	chr1:32694077-32694310(+)$1	233	4	41	11.9600
e[bb!!a[cccddddmmmmdddd4444ccc]a22bb]	chr7:100275315-100275541(+)$1	226	10	47	12.7380
gggggg[a!!eeeeeooooooeeeee4444agggggg	chr17:41170700-41170917(-)$1	217	144	181	14.3769
fffff[a!!a[ddddnnnnndddd]a22a]ffffffd	chr2:97533949-97534168(-)$1	219	102	139	12.6267
g[ffffff####cccmmmmccc4444ffffff]gggg	chr20:42344847-42345131(+)$1	284	172	209	10.9604
c$$$$$bb"""ddddoooooodddd22bb55555ccc	chr22:20940756-20941008(+)$1	252	73	110	12.9594
ggggg[bb####cccooooooccc333bb]ggggggg	chr1:230416111-230416358(+)$1	247	2	39	16.1206
d####ccc!!ccc!!cccmmmmccc22ccc22cccdd	chr11:65413652-65413933(+)$1	281	49	86	11.2758
fbbeeeee!!eeeeeooooooeeeee22eeeee]bb4	chr1:109807444-109807686(+)$1	242	144	181	11.9093
cc[eeeee"""ddddoooooodddd]eeeee]cccbb	chr16:88520228-88520487(+)$1	259	112	149	15.1329
eee!!bb[a"""ddddmmmmdddd333abb22eeeee	chr11:2016774-2017007(-)$1	233	62	99	13.2513
a!!dddd[a!!ddddoooooodddd22a]dddd22af	chr8:145621561-145621809(-)$1	248	28	65	15.6408
Fccc!!ccc!!ddddoooooodddd22ccc22ccc::	chr10:100190822-100191107(-)$1	285	8	45	15.5486
cffffff"""ccc[ammmma]ccc333ffffff]ccc	chr16:2012793-2012999(-)$1	206	36	73	12.2020
dddd$$$$$ccccccooooooccc]cccdddd22ddd	chr1:44447265-44447523(+)$1	258	119	156	11.9084
f[bb"""ccca[ddddllldddd]a]ccc333bbfff	chr19:7685660-7686014(-)$1	354	190	227	12.3343
da[a[==========oooooo==========]a]a33	chr19:50308708-50308932(+)$1	224	54	91	14.6284
"ffffff####eeeeemmmmeeeee22ffffff]ccc	chrX:153583093-153583301(-)$1	208	166	203	11.3324
""a[dddd[ccc[ddddllldddd333ccc333dddd	chr8:101733565-101733775(-)$1	210	99	136	13.6030
!!eeeee####ddddnnnnndddd333eeeee22bb]	chr1:19452839-19453060(-)$1	221	34	71	13.4824
eee!!ccc"""cccqqqqqqqqccc22ccceeeee]c	chr7:128480550-128480826(+)$1	276	42	79	10.2542
b[bb!!ccc[ddddmmmmddddccc333bb]bb]ddd	chr19:4446593-4446814(-)$1	221	62	99	11.2975
f####dddd!!ddddoooooodddd88888888dddd	chr19:58904259-58904526(+)$1	267	59	96	12.7813
ccc[bb[ccc[dddd[allla]dddd]ccc]bb]ccc	chr19:50919590-50919840(+)$1	250	153	190	13.1116
========[bb[cccnnnnncccbb22==========	chr3:41277191-41277436(+)$1	245	10	47	12.6609
dd[bb[a[ccc[ddddmmmmdddd]ccc]a]bbdddd	chr9:131235125-131235389(+)$1	264	222	259	11.3129
ccc!!bbccc!!ddddmmmmdddd22ccc22bb22cc	chr12:124809681-124809921(-)$1	240	171	208	12.6803
iiiiieeeee[ddddnnnnnddddeeeee22iiiiii	chr13:92001166-92001431(+)$1	265	114	151	12.1554
c[a[dddd"""ddddllldddd]dddd22a]ccc]bb	chr16:85659917-85660167(+)$1	250	73	110	11.5972
==========!!cccooooooccc22===========	chr19:6226892-6227137(-)$1	245	183	220	16.4831
cccc[ccc"""ccc!!ccclllccc22ccc]cccccc	chr9:138825228-138825447(-)$1	219	160	197	12.3352
ggggg%%%%%%ddddoooooodddd4444ggggggg2	chr16:30079866-30080072(+)$1	206	133	170	13.7729
iiiiccca[ffffffooooooffffff]a]ccc]iii	chr1:202912784-202913053(-)$1	269	209	246	11.7676
cccbbbbccc[cccooooooccc]ccc]bb]bb]ccc	chr11:75115614-75115833(+)$1	219	61	98	12.5069
gg[bb[eeeee[cccooooooccc]eeeee]bb]ggg	chr8:101733518-101733720(-)$1	202	114	151	12.9735
cciiiiiiiiiddddoooooodddd]iiiiiiiiicc	chrX:153220678-153220926(-)$1	248	75	112	16.0065
#==========ddddoooooodddd55555=======	chr11:810133-810335(+)$1	202	24	61	13.6363
!!ccc[bb[eeeeeaooooooa]eeeeebb]ccc22d	chr1:156290539-156290895(-)$1	356	182	219	12.0869
ccc####ccc[ddddoooooodddd]ccc22ccc22d	chrX:39932659-39932944(-)$1	285	26	63	15.9023
ggggg%%%%%%ddddoooooodddd4444ggggggg2	chr16:30079888-30080099(+)$1	211	111	148	13.7729

#otherMatches

#Seq PSSM
GAGUCGUCUUCCCCCACGGUGGUGGAAGGGCAGACCU	chr1:22174217-22174433(-)$1	216	129	166	11.7019
CUGUCUGUCACUUCUGCAGCCAUGUAUGAGCACAAGA	chr19:34890584-34890790(+)$1	206	20	57	10.8985
UCCCUCGGGCACCGGCGACUGCCCGGACCCGGGGGAG	chr19:1037674-1037926(+)$1	252	143	180	12.8384
UGUGUCUGACUCCAGUUAAGUCUGGGAUCAAUGGACC	chr1:36808884-36809142(-)$1	258	14	51	13.7346
AAAGGCUCACUCUCAAGCACGACUAAGAGCCUUCUGA	chr19:49469792-49470014(+)$1	222	174	211	13.5549
ACCCAGGGUAAGUGUUUCCAUCCCUCCUCUGGAGGCU	chr2:96951953-96952166(-)$1	213	111	148	11.2844
CGGUGUUCAUCUCCGACAUCCGGAACUGUGAGCGCGC	chr19:50270300-50270557(+)$1	257	130	167	14.4264
CCCACGUCAUGCUGCAGCGCCGCAGAGAUCAUGGCUG	chr3:53276116-53276359(-)$1	243	105	142	11.8959
UGGGGGGGUUGCCGCGUCCGGCGGGGCCUGACUCUGA	chr13:92001092-92001366(+)$1	274	188	225	12.1554
CCACCAUGUACCCGGGCAUUGCCGACAGGAUGCAGAA	chr17:79477924-79478193(-)$1	269	164	201	12.8274
UCCUUAGAGCUCGAGUCGUUCCUUCCCCUCCUGGAUU	chr19:56598708-56598980(-)$1	272	106	143	16.2540
AAGCGCAUCCCGGACACCCGCGUCCACUGCUGCCUCU	chr17:75484727-75485050(+)$1	323	157	194	18.0638
UUUGCAAGGAGAGCUGAGACGGGCUGCUCCACUGUAC	chr17:46703598-46703849(-)$1	251	16	53	13.6357
ccAGUCCCCGCGGUCUCUGCCCGGGCUGACGCCCAGG	chr2:127413637-127413890(+)$1	253	164	201	11.1896
CCUUGCCCUCCCUGGGUUCAGCCAGGGAAGAAGACGA	chr20:32883100-32883341(-)$1	241	171	208	12.8295
CUCUUCUUCCUUCCCUAGUCUGGAGAGGUGUUGGUGA	chr1:32694077-32694310(+)$1	233	4	41	11.9600
GGUGCACUGCCCUCCGUGUGGAGACCUGGCUGACCAG	chr7:100275315-100275541(+)$1	226	10	47	12.7380
AGGAAGAGGUGACUGUGCCCUCGGUCCAGACCUUCCU	chr17:41170700-41170917(-)$1	217	144	181	14.3769
GCAGGGUCCGGAGCCCCAGUGGCUGCAAGGCCUGCUG	chr2:97533949-97534168(-)$1	219	102	139	12.6267
CUCAUCUCAGACCCUGCUUAGGAUGGGGGAUGUGGCC	chr20:42344847-42345131(+)$1	284	172	209	10.9604
GUUCACGCCCACUGCUCUGUUGCAGACGCCAACCCCU	chr22:20940756-20941008(+)$1	252	73	110	12.9594
UCUGUGAACCUGGAGCGGUUACUUAUUUUGACAGAUA	chr1:230416111-230416358(+)$1	247	2	39	16.1206
AGCGCCACAUUGGCAACGACAUUGUGACCAUCGUGUU	chr11:65413652-65413933(+)$1	281	49	86	11.2758
GCGAGUGUCCCCCAAAUUACCUUGGGCCAUACUGUGA	chr1:109807444-109807686(+)$1	242	144	181	11.9093
GGGCGCGGCCCGGGCAGCUCGGCCCCUCGCGGCCUGC	chr16:88520228-88520487(+)$1	259	112	149	15.1329
GCACCGGCGACUCCAUCUUCAUGGCCACCCCCUGCGG	chr11:2016774-2017007(-)$1	233	62	99	13.2513
AGAAGGGAGACGCGGCCUCAUCCGCAGCAUCCUCAUC	chr8:145621561-145621809(-)$1	248	28	65	15.6408
GGGGCAAGGUUGUUGGUGAUAUGGCUUCCUCUCCCUU	chr10:100190822-100191107(-)$1	285	8	45	15.5486
GGGCAGUGAUUGGGUGUAGGGCCACCAGCUGCCUCAC	chr16:2012793-2012999(-)$1	206	36	73	12.2020
CCUCACCCAUGCCCCUGGAGCGGGUGCAGAGGGAGAA	chr1:44447265-44447523(+)$1	258	119	156	11.9084
CAGCAGUAUGACAUGUUCAACAUCUACAUCAAGCGGG	chr19:7685660-7686014(-)$1	354	190	227	12.3343
GUGCAGCAGGUGCUCAAUAUCGAGUGCCUGCGGGACU	chr19:50308708-50308932(+)$1	224	54	91	14.6284
CCUGGGGCCCCUCUGUGACAACAGACUCUCCAGCAGC	chrX:153583093-153583301(-)$1	208	166	203	11.3324
AUGAUCACCCGCCGCUCCUUGGGCUACGCGUAUGUGA	chr8:101733565-101733775(-)$1	210	99	136	13.6030
CCUGUGGCUACCAGCCAGUUGCUGAAACCACAUACUA	chr1:19452839-19453060(-)$1	221	34	71	13.4824
UCUCCUCAGAGGGCACAGAGGAGCCAGUGAAGGUGCG	chr7:128480550-128480826(+)$1	276	42	79	10.2542
AUUGCACAGUGACACCCAUGUCCUGCCACGCUGUAGA	chr19:4446593-4446814(-)$1	221	62	99	11.2975
AUUUCCUGCUCCCUGCUGCCCCAGGAUUACAUUGCAG	chr19:58904259-58904526(+)$1	267	59	96	12.7813
AGCCCAUCCUGGGCGAGGGCCGUGCCGAGGCUGUGCU	chr19:50919590-50919840(+)$1	250	153	190	13.1116
UUUCUUUUGGCAGGAGGGGGUCCGCAUGGAAGAAAUA	chr3:41277191-41277436(+)$1	245	10	47	12.6609
CCAUGGAACUGGCCUCGGGAGGGGGCAGCUGCAGGCU	chr9:131235125-131235389(+)$1	264	222	259	11.3129
GCCCUGUGCAGACCUUACUCAGGGGAUGUUUACCUGG	chr12:124809681-124809921(-)$1	240	171	208	12.6803
UGGGGGGGUUGCCGCGUCCGGCGGGGCCUGACUCUGA	chr13:92001166-92001431(+)$1	265	114	151	12.1554
CGUUAGGGCCACGGAAGCUUCGCCCCUUUGGGGGAGU	chr16:85659917-85660167(+)$1	250	73	110	11.5972
CGCCGGGGCCCAGCUGUGGUGGGUCUGGCCCCGGCGC	chr19:6226892-6227137(-)$1	245	183	220	16.4831
CUGCAGAUCUCUAGAAUCUUCCAGACACUAAAUCGCA	chr9:138825228-138825447(-)$1	219	160	197	12.3352
AAUGGCGAGACUACCACCCAAGGUGAGAACUGUUUGA	chr16:30079866-30080072(+)$1	206	133	170	13.7729
CUUAGGCCUGAUAGGCUCAAACCUAUUUGAGCCUUAA	chr1:202912784-202913053(-)$1	269	209	246	11.7676
GAGACCCCAGCUGUGUGCUAACAACUGUGGUGUCCUC	chr11:75115614-75115833(+)$1	219	61	98	12.5069
CUCCgcggucggccgggcgggcgggcggccaugaggc	chr8:101733518-101733720(-)$1	202	114	151	12.9735
GCCAGGGUGAUGUGCAGCCUGGCACUGUCACCUUGGU	chrX:153220678-153220926(-)$1	248	75	112	16.0065
GCCCGGCGGCCCCGGGAUGGGCCGGCAGGAGGCCGCC	chr11:810133-810335(+)$1	202	24	61	13.6363
GCCCUGGAUGCUGUCAAGAUGGUACAGUUUGAGGAGA	chr1:156290539-156290895(-)$1	356	182	219	12.0869
GUGUCGAGUGCAGGCCGCCCAGCCUCCGCAUCACCCG	chrX:39932659-39932944(-)$1	285	26	63	15.9023
AAUGGCGAGACUACCACCCAAGGUGAGAACUGUUUGA	chr16:30079888-30080099(+)$1	211	111	148	13.7729

#DB
(((..((((.(((((((....))))..))).))))))	chr1:22174217-22174433(-)$1	1	129	166	11.7019
((((((....(((.((((....)))).)))....)))	chr19:34890584-34890790(+)$1	1	20	57	10.8985
(((((((((..(.(((....))).)..))))))))).	chr19:1037674-1037926(+)$1	1	143	180	12.8384
(.(((.(((.(((((......))))).)))))).)))	chr1:36808884-36809142(-)$1	1	14	51	13.7346
.(((((((....((......))....))))))).)))	chr19:49469792-49470014(+)$1	1	174	211	13.5549
(...((((...(((....)))))))..))))))))..	chr2:96951953-96952166(-)$1	1	111	148	11.2844
((.(((((((.((((.....))))...))))))))))	chr19:50270300-50270557(+)$1	1	130	167	14.4264
....)))))))((((......))))((..(((((.((	chr3:53276116-53276359(-)$1	1	105	142	11.8959
((((((((((.((((.....)))))))))..))))))	chr13:92001092-92001366(+)$1	1	188	225	12.1554
...((.(((((((((......)))...)).))))...	chr17:79477924-79478193(-)$1	1	164	201	12.8274
(((...(((...(((......)))...)))..)))))	chr19:56598708-56598980(-)$1	1	106	143	16.2540
(.(((((....((((......))))..))).)).)))	chr17:75484727-75485050(+)$1	1	157	194	18.0638
..((((.((((((((......)))).))))..)))).	chr17:46703598-46703849(-)$1	1	16	53	13.6357
...(((((((.(((....)))))))..)))..)))))	chr2:127413637-127413890(+)$1	1	164	201	11.1896
(.((..(.(((((((......))))))).)..)).))	chr20:32883100-32883341(-)$1	1	171	208	12.8295
(.(..(..((((.((......)).)))).)..)))))	chr1:32694077-32694310(+)$1	1	4	41	11.9600
(.((..(.(((((((....))))....))).)..)).	chr7:100275315-100275541(+)$1	1	10	47	12.7380
((((((.(..(((((......)))))....)))))))	chr17:41170700-41170917(-)$1	1	144	181	14.3769
(((((.(..(.((((.....)))).)..).))))))(	chr2:97533949-97534168(-)$1	1	102	139	12.6267
(.((((((....(((....)))....)))))).))))	chr20:42344847-42345131(+)$1	1	172	209	10.9604
(.....((...((((......))))..)).....)))	chr22:20940756-20941008(+)$1	1	73	110	12.9594
(((((.((....(((......)))...)).)))))))	chr1:230416111-230416358(+)$1	1	2	39	16.1206
(....(((..(((..(((....)))..)))..)))))	chr11:65413652-65413933(+)$1	1	49	86	11.2758
((((((((..(((((......)))))..))))).)).	chr1:109807444-109807686(+)$1	1	144	181	11.9093
((.(((((...((((......)))).))))).)))))	chr16:88520228-88520487(+)$1	1	112	149	15.1329
(((..((.(...((((....))))...)))..)))))	chr11:2016774-2017007(-)$1	1	62	99	13.2513
(..((((.(..((((......))))..).))))..))	chr8:145621561-145621809(-)$1	1	28	65	15.6408
((((..(((..((((......))))..)))..)))..	chr10:100190822-100191107(-)$1	1	8	45	15.5486
(((((((...(((.(....).)))...)))))).)))	chr16:2012793-2012999(-)$1	1	36	73	12.2020
((((.....((((((......))).)))))))..)))	chr1:44447265-44447523(+)$1	1	119	156	11.9084
(.((...((((.((((...)))).).)))...)))))	chr19:7685660-7686014(-)$1	1	190	227	12.3343
((.(.((((((((((......)))))))))).).)..	chr19:50308708-50308932(+)$1	1	54	91	14.6284
.((((((....(((((....)))))..)))))).)))	chrX:153583093-153583301(-)$1	1	166	203	11.3324
..(.((((.(((.((((...))))...)))...))))	chr8:101733565-101733775(-)$1	1	99	136	13.6030
..(((((....((((.....))))...)))))..)).	chr1:19452839-19453060(-)$1	1	34	71	13.4824
(((..(((...(((........)))..)))))))).)	chr7:128480550-128480826(+)$1	1	42	79	10.2542
(.((..(((.((((....)))))))...)).)).)))	chr19:4446593-4446814(-)$1	1	62	99	11.2975
(....((((..((((......))))........))))	chr19:58904259-58904526(+)$1	1	59	96	12.7813
(((.((.(((.((((.(...).)))).))).)).)))	chr19:50919590-50919840(+)$1	1	153	190	13.1116
((((((((.((.(((.....)))))..))))))))))	chr3:41277191-41277436(+)$1	1	10	47	12.6609
((.((.(.(((.((((....)))).))).).))))))	chr9:131235125-131235389(+)$1	1	222	259	11.3129
(((..(((((..((((....))))..)))..))..))	chr12:124809681-124809921(-)$1	1	171	208	12.6803
((((((((((.((((.....)))))))))..))))))	chr13:92001166-92001431(+)$1	1	114	151	12.1554
(.(.((((...((((...)))).))))..).))).))	chr16:85659917-85660167(+)$1	1	73	110	11.5972
((((((((((..(((......)))..)))))))))))	chr19:6226892-6227137(-)$1	1	183	220	16.4831
((((.(((...(((..(((...)))..))).))))))	chr9:138825228-138825447(-)$1	1	160	197	12.3352
(((((......((((......))))....))))))).	chr16:30079866-30080072(+)$1	1	133	170	13.7729
((((((((.((((((......)))))).).))).)))	chr1:202912784-202913053(-)$1	1	209	246	11.7676
((((((((((.(((......))).))).)).)).)))	chr11:75115614-75115833(+)$1	1	61	98	12.5069
((.((.(((((.(((......))).))))).)).)))	chr8:101733518-101733720(-)$1	1	114	151	12.9735
))(((((((((((((......)))).)))))))))((	chrX:153220678-153220926(-)$1	1	75	112	16.0065
.((((((((((((((......)))).....)))))))	chr11:810133-810335(+)$1	1	24	61	13.6363
..(((.((.((((((......).))))))).)))..)	chr1:156290539-156290895(-)$1	1	182	219	12.0869
(((....(((.((((......)))).)))..)))..)	chrX:39932659-39932944(-)$1	1	26	63	15.9023
(((((......((((......))))....))))))).	chr16:30079888-30080099(+)$1	1	111	148	13.7729

#PSSM
c : 0.21	g : 0.12	d : 0.12	f : 0.10	e : 0.07	i : 0.07	" : 0.07	! : 0.03	= : 0.03	[ : 0.01	4 : 0.01	$ : 0.01	a : 0.01	F : 0.01	b : 0.01	# : 0.01	
[ : 0.16	c : 0.16	g : 0.12	i : 0.07	" : 0.07	e : 0.05	d : 0.05	f : 0.05	! : 0.05	= : 0.05	$ : 0.03	# : 0.03	4 : 0.01	b : 0.01	a : 0.01	
c : 0.14	g : 0.10	b : 0.10	i : 0.09	[ : 0.09	e : 0.07	f : 0.07	d : 0.05	a : 0.05	= : 0.05	" : 0.03	$ : 0.03	# : 0.03	4 : 0.01	! : 0.01	
b : 0.16	c : 0.10	g : 0.10	! : 0.09	i : 0.09	f : 0.07	d : 0.05	# : 0.05	e : 0.05	[ : 0.05	= : 0.05	" : 0.03	4 : 0.01	$ : 0.01	a : 0.01	
! : 0.16	g : 0.12	c : 0.10	d : 0.09	b : 0.09	i : 0.07	f : 0.07	# : 0.05	e : 0.05	= : 0.05	" : 0.03	$ : 0.03	[ : 0.03	
d : 0.12	c : 0.12	[ : 0.12	e : 0.09	g : 0.07	! : 0.07	b : 0.07	= : 0.07	f : 0.05	i : 0.03	" : 0.03	$ : 0.03	% : 0.03	a : 0.01	# : 0.01	
c : 0.16	d : 0.14	e : 0.10	b : 0.10	a : 0.07	= : 0.07	g : 0.05	[ : 0.05	f : 0.05	# : 0.03	i : 0.03	% : 0.03	! : 0.01	$ : 0.01	" : 0.01	
c : 0.21	d : 0.14	e : 0.09	[ : 0.09	# : 0.07	= : 0.07	g : 0.05	b : 0.05	i : 0.03	! : 0.03	a : 0.03	% : 0.03	f : 0.01	" : 0.01	$ : 0.01	
c : 0.20	# : 0.12	" : 0.12	d : 0.10	! : 0.07	[ : 0.07	g : 0.05	e : 0.05	= : 0.05	i : 0.03	a : 0.03	% : 0.03	$ : 0.01	
" : 0.16	c : 0.16	# : 0.12	! : 0.12	e : 0.07	d : 0.07	[ : 0.05	g : 0.05	= : 0.05	% : 0.03	a : 0.01	b : 0.01	f : 0.01	i : 0.01	
c : 0.14	" : 0.14	[ : 0.14	! : 0.10	# : 0.10	e : 0.09	d : 0.05	g : 0.03	b : 0.03	= : 0.03	% : 0.03	a : 0.01	f : 0.01	i : 0.01	
d : 0.41	c : 0.20	e : 0.09	[ : 0.07	# : 0.05	" : 0.03	! : 0.03	a : 0.01	b : 0.01	g : 0.01	= : 0.01	f : 0.01	
d : 0.47	c : 0.30	e : 0.09	[ : 0.05	b : 0.01	g : 0.01	= : 0.01	f : 0.01	
d : 0.50	c : 0.25	e : 0.09	[ : 0.03	b : 0.03	g : 0.01	! : 0.01	= : 0.01	f : 0.01	
d : 0.50	c : 0.16	e : 0.07	m : 0.05	o : 0.03	! : 0.03	a : 0.03	g : 0.01	b : 0.01	= : 0.01	q : 0.01	f : 0.01	
o : 0.52	d : 0.12	m : 0.10	n : 0.10	c : 0.03	e : 0.01	q : 0.01	[ : 0.01	l : 0.01	! : 0.01	
o : 0.52	m : 0.20	n : 0.10	d : 0.05	c : 0.03	l : 0.03	q : 0.01	a : 0.01	
o : 0.52	m : 0.21	n : 0.10	l : 0.07	c : 0.03	d : 0.01	q : 0.01	
o : 0.52	m : 0.20	n : 0.10	c : 0.05	l : 0.05	d : 0.03	q : 0.01	
o : 0.52	m : 0.14	n : 0.10	d : 0.07	c : 0.05	l : 0.05	a : 0.01	q : 0.01	
o : 0.49	d : 0.23	c : 0.10	m : 0.05	b : 0.01	] : 0.01	e : 0.01	q : 0.01	a : 0.01	l : 0.01	
d : 0.52	c : 0.20	e : 0.07	m : 0.03	b : 0.03	g : 0.01	= : 0.01	q : 0.01	] : 0.01	l : 0.01	f : 0.01	a : 0.01	
d : 0.52	c : 0.25	e : 0.07	4 : 0.03	] : 0.03	g : 0.01	b : 0.01	= : 0.01	f : 0.01	
d : 0.50	c : 0.20	e : 0.09	] : 0.07	4 : 0.05	g : 0.01	= : 0.01	b : 0.01	f : 0.01	
d : 0.36	3 : 0.14	e : 0.12	c : 0.09	] : 0.07	4 : 0.05	a : 0.03	2 : 0.03	g : 0.01	= : 0.01	b : 0.01	f : 0.01	
2 : 0.27	3 : 0.16	e : 0.12	4 : 0.09	] : 0.09	d : 0.07	c : 0.05	b : 0.01	g : 0.01	a : 0.01	= : 0.01	8 : 0.01	f : 0.01	5 : 0.01	
2 : 0.27	3 : 0.16	c : 0.10	e : 0.09	4 : 0.07	] : 0.05	d : 0.05	g : 0.03	f : 0.03	= : 0.03	b : 0.01	8 : 0.01	i : 0.01	5 : 0.01	
c : 0.32	e : 0.10	f : 0.07	g : 0.05	b : 0.05	4 : 0.05	2 : 0.05	= : 0.05	i : 0.03	d : 0.03	a : 0.03	] : 0.03	! : 0.01	3 : 0.01	8 : 0.01	5 : 0.01	
c : 0.29	b : 0.12	e : 0.10	f : 0.07	] : 0.07	4 : 0.05	= : 0.05	i : 0.03	g : 0.03	d : 0.03	a : 0.03	! : 0.01	8 : 0.01	2 : 0.01	5 : 0.01	
c : 0.23	e : 0.09	g : 0.07	f : 0.07	2 : 0.07	] : 0.07	a : 0.07	b : 0.07	d : 0.05	= : 0.05	i : 0.03	5 : 0.03	4 : 0.01	3 : 0.01	8 : 0.01	
2 : 0.21	] : 0.20	g : 0.09	f : 0.09	e : 0.09	= : 0.07	d : 0.05	i : 0.03	c : 0.03	3 : 0.03	4 : 0.01	a : 0.01	5 : 0.01	8 : 0.01	
2 : 0.14	b : 0.12	c : 0.10	g : 0.10	f : 0.09	d : 0.07	i : 0.07	e : 0.07	= : 0.05	] : 0.03	3 : 0.03	4 : 0.01	a : 0.01	5 : 0.01	8 : 0.01	
c : 0.16	b : 0.16	g : 0.10	d : 0.09	e : 0.09	i : 0.07	f : 0.07	2 : 0.05	= : 0.05	a : 0.03	4 : 0.01	] : 0.01	5 : 0.01	3 : 0.01	8 : 0.01	
] : 0.21	d : 0.14	c : 0.12	g : 0.10	2 : 0.09	i : 0.07	e : 0.07	b : 0.05	= : 0.05	4 : 0.01	f : 0.01	5 : 0.01	
c : 0.23	d : 0.16	g : 0.10	i : 0.09	b : 0.07	2 : 0.07	f : 0.05	e : 0.05	= : 0.05	] : 0.03	[ : 0.01	3 : 0.01	a : 0.01	
c : 0.23	d : 0.18	g : 0.10	b : 0.09	i : 0.07	e : 0.05	f : 0.05	3 : 0.05	= : 0.05	2 : 0.03	a : 0.01	: : 0.01	] : 0.01	
c : 0.25	d : 0.20	f : 0.07	3 : 0.07	g : 0.07	e : 0.05	] : 0.05	i : 0.05	= : 0.05	b : 0.03	2 : 0.03	4 : 0.01	: : 0.01	

#score	720.3798503829311
#seq	55
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_CDS_m2_run1.txt

#BEAR
D}IIIIIIIII::::d	chr22:50016766-50017051(-)$1	285	244	260	9.0764
HHH}IIIIIIIII::d	chr16:31201982-31202227(+)$1	245	197	213	8.1720
::IIIIIIIIICCC{A	chr19:1227712-1228044(+)$1	332	0	16	9.0729
B}JJJJJJJJJJ~~~~	chr17:80443423-80443631(+)$1	208	186	202	12.0383
HHHHHHEEEEE}BBCC	chr17:73823401-73823770(-)$1	369	310	326	7.3121
bHHHHHHHH~~~~BBY	chr21:45223340-45223615(+)$1	275	175	191	7.4954
::IIIIIIIIIYYBBF	chr6:31639923-31640164(+)$1	241	128	144	10.8704
EEEYYFFFFFF}BB::	chr1:155290189-155290467(+)$1	278	260	276	7.2509
C}IIIIIIIII}CCCC	chr10:104180922-104181225(+)$1	303	281	297	12.2446
B}IIIIIIIIIFFFFF	chr19:18544940-18545222(+)$1	282	237	253	10.5766
F}HHHHHHHHYYBB}C	chr7:930551-930797(+)$1	246	227	243	9.7202
EE}EEEEE}BB}BB}D	chr17:76113888-76114164(-)$1	276	239	255	6.4020
A}IIIIIIIII~~~~C	chr19:50162936-50163186(-)$1	250	227	243	12.4622
GJJJJJJJJJJ}FFFF	chr14:102515941-102516215(+)$1	274	200	216	10.2186
FFFYYFFFFFF}A}CC	chr7:1474135-1474423(-)$1	288	271	287	7.6156
gJJJJJJJJJJ}DDDD	chr11:637327-637590(+)$1	263	165	181	10.1565
YFFFFFF}CCC}BBDD	chr19:2425982-2426253(-)$1	271	253	269	7.2818
}JJJJJJJJJJ}BB||	chr5:1815888-1816167(+)$1	279	233	249	10.7687
DD}HHHHHHHH}CCCF	chr19:1407569-1407878(+)$1	309	280	296	9.0271
JJJJJJJJJJJ}CCC:	chr11:67817006-67817250(+)$1	244	221	237	10.9471
|JJJJJJJJJJJ::::	chr17:79526315-79526540(-)$1	225	105	121	8.6229
JJJJJJJJJJJJBB}H	chr19:798402-798726(+)$1	324	190	206	10.7386
::IIIIIIIII::::c	chr22:20100122-20100380(-)$1	258	55	71	7.8871
C}IIIIIIIIIHHHHH	chr16:31202298-31202532(+)$1	234	211	227	9.3665
DDD}GGGGGGG}BBCC	chr22:19865540-19865810(-)$1	270	240	256	7.0570
cccHHHHHHHH}BB}A	chr6:32948375-32948613(+)$1	238	201	217	7.4170
JJJJJJJJJJJJ::::	chr5:10261727-10261958(+)$1	231	2	18	9.1649
B}JJJJJJJJJJ~~~~	chr22:20100593-20100847(-)$1	254	157	173	12.0383
YYIIIIIIIIIDDDD:	chr11:639269-639549(+)$1	280	234	250	10.1482
dCCC}FFFFFF}BBDD	chr1:156109470-156109770(+)$1	300	210	226	7.3730
EEEEEFFFFFF}CCC:	chr16:23700407-23700691(+)$1	284	170	186	7.1806
C}JJJJJJJJJJCCC:	chr12:117476878-117477187(-)$1	309	252	268	11.0721
__IIIIIIIII}BB}E	chr11:639706-639991(+)$1	285	227	243	11.8084
YYIIIIIIIII:::::	chr2:20821927-20822186(-)$1	259	203	219	9.1990
G}IIIIIIIII:::::	chr16:29708606-29708876(+)$1	270	230	246	9.2611
:CCC}FFFFFF}A}EE	chr2:74689769-74690015(-)$1	246	105	121	7.5367
B}FFFFFFDDDD~~~~	chr11:290841-291082(+)$1	241	197	213	7.2847
::IIIIIIIIIEEEEE	chr7:99751398-99751733(+)$1	335	280	296	9.8645
D}IIIIIIIIIYYDDD	chr7:100171695-100171981(-)$1	286	243	259	11.6874
C}IIIIIIIIIYYCCC	chr17:46628023-46628315(+)$1	292	276	292	12.0748
CCHHHHHHHHDDDD::	chr7:934872-935120(+)$1	248	232	248	7.1857
:JJJJJJJJJJDDDD{	chr16:31202251-31202498(+)$1	247	8	24	9.3591
C}FFFFFF~~~~BBZZ	chr11:64011358-64011599(+)$1	241	134	150	6.8232
A}IIIIIIIII}BB::	chr19:1468354-1468632(-)$1	278	231	247	12.2743
~JJJJJJJJJJ}FFFF	chr22:20100027-20100296(-)$1	269	251	267	10.6439
BJJJJJJJJJJ~~~~G	chr18:9337145-9337454(+)$1	309	135	151	11.3917
EEEYYFFFFFF~~~~D	chr16:31202614-31202843(+)$1	229	210	226	7.3787
_A}HHHHHHHH}A}AY	chr8:145106190-145106464(-)$1	274	179	195	9.3446
E}BB}FFFFFFYYDDD	chr5:10262491-10262716(+)$1	225	177	193	7.9822
ccIIIIIIIIIEEEEE	chr1:32827583-32827856(-)$1	273	233	249	9.1927
CCCC}FFFFFF}BB}E	chr8:145737531-145737787(-)$1	256	74	90	8.5060
A}IIIIIIIIIZZZDD	chr6:33259695-33260047(-)$1	352	300	316	11.9411
D}FFFFFF}AYYBBCC	chr1:150531382-150531623(+)$1	241	215	231	8.4966
DD}HHHHHHHH}BB}B	chr9:140005100-140005335(-)$1	235	147	163	9.8698
JJJJJJJJJJJ}DDDD	chr7:150647088-150647340(-)$1	252	85	101	10.8525
~CCC}FFFFFF}BB??	chr17:79993818-79994098(-)$1	280	251	267	7.6784
A}JJJJJJJJJJBBBB	chr19:2270329-2270593(+)$1	264	167	183	12.1030

#otherMatches

#Seq PSSM
uagguuucugucucuc	chr22:50016766-50017051(-)$1	285	244	260	9.0764
UGGUGCUAGGGAGCUG	chr16:31201982-31202227(+)$1	245	197	213	8.1720
GAGCGCCCUGCAGGGC	chr19:1227712-1228044(+)$1	332	0	16	9.0729
GGUGCUCUUGGCCACC	chr17:80443423-80443631(+)$1	208	186	202	12.0383
UGGCAGGCGGCAGGGC	chr17:73823401-73823770(-)$1	369	310	326	7.3121
CCCUGCUCCGAGAUCA	chr21:45223340-45223615(+)$1	275	175	191	7.4954
CUUCCUGAAUUCCACA	chr6:31639923-31640164(+)$1	241	128	144	10.8704
UAACCUUCUUGUGGUU	chr1:155290189-155290467(+)$1	278	260	276	7.2509
GGCCUUCCGGUCGCUG	chr10:104180922-104181225(+)$1	303	281	297	12.2446
CUGGGAGGCCCCACAC	chr19:18544940-18545222(+)$1	282	237	253	10.5766
UCCCCUGUCCGAGCCG	chr7:930551-930797(+)$1	246	227	243	9.7202
CCUUCCUGGGCGCCGC	chr17:76113888-76114164(-)$1	276	239	255	6.4020
CUACCUGCAGGACUUG	chr19:50162936-50163186(-)$1	250	227	243	12.4622
UGGAGGAGCUCUGCCU	chr14:102515941-102516215(+)$1	274	200	216	10.2186
AACCCGGACUUGUACU	chr7:1474135-1474423(-)$1	288	271	287	7.6156
CGCCCUGCAGACGCCC	chr11:637327-637590(+)$1	263	165	181	10.1565
AGCCCCAGCUAGUGAC	chr19:2425982-2426253(-)$1	271	253	269	7.2818
UAUUCCUGGUGCUGAA	chr5:1815888-1816167(+)$1	279	233	249	10.7687
ccgcuccccgccgccc	chr19:1407569-1407878(+)$1	309	280	296	9.0271
CCUGCGGAGGAGGCCC	chr11:67817006-67817250(+)$1	244	221	237	10.9471
UGGCGGGCAGCUCCCA	chr17:79526315-79526540(-)$1	225	105	121	8.6229
GCACCGCGGGCUCGGG	chr19:798402-798726(+)$1	324	190	206	10.7386
CCCCACAGCCUCUGCA	chr22:20100122-20100380(-)$1	258	55	71	7.8871
GUUUCAUUUUGAGGGC	chr16:31202298-31202532(+)$1	234	211	227	9.3665
GGUAUCCCUCGAGUGC	chr22:19865540-19865810(-)$1	270	240	256	7.0570
GCUGUGACACUUCUUC	chr6:32948375-32948613(+)$1	238	201	217	7.4170
AGAAGCUGGGCUUUGC	chr5:10261727-10261958(+)$1	231	2	18	9.1649
GGCCUCCCAGCACCUC	chr22:20100593-20100847(-)$1	254	157	173	12.0383
CACCGCCUCCAUCUUC	chr11:639269-639549(+)$1	280	234	250	10.1482
GGGGUGCUGGGAGGAG	chr1:156109470-156109770(+)$1	300	210	226	7.3730
CAGCGUGGGGGUGCUC	chr16:23700407-23700691(+)$1	284	170	186	7.1806
CACCGCCACCUCCGCG	chr12:117476878-117477187(-)$1	309	252	268	11.0721
AAGCUGCACGGCCGCG	chr11:639706-639991(+)$1	285	227	243	11.8084
UUGGACUUCCUCAUAA	chr2:20821927-20822186(-)$1	259	203	219	9.1990
acuagcuugagcccaa	chr16:29708606-29708876(+)$1	270	230	246	9.2611
UUUGAAUCAGGCAGUG	chr2:74689769-74690015(-)$1	246	105	121	7.5367
CAUGGCCUCAGUCCUG	chr11:290841-291082(+)$1	241	197	213	7.2847
AACUAGGGCCUUCUGC	chr7:99751398-99751733(+)$1	335	280	296	9.8645
CCUCUGGGGUCGAGGG	chr7:100171695-100171981(-)$1	286	243	259	11.6874
UGCCGCUCGCUGAGGU	chr17:46628023-46628315(+)$1	292	276	292	12.0748
GGACGUUUCAGAGGCG	chr7:934872-935120(+)$1	248	232	248	7.1857
UAGAUCUUGUUUCUUU	chr16:31202251-31202498(+)$1	247	8	24	9.3591
GAGCUGUAACCAGACU	chr11:64011358-64011599(+)$1	241	134	150	6.8232
GCAGCCACGUGACAAU	chr19:1468354-1468632(-)$1	278	231	247	12.2743
AGGGCCCCAGGGGCGG	chr22:20100027-20100296(-)$1	269	251	267	10.6439
AUGGCUUCCAGAAUCA	chr18:9337145-9337454(+)$1	309	135	151	11.3917
UGUAACCUUCCAAUUC	chr16:31202614-31202843(+)$1	229	210	226	7.3787
UGGCCUUUCCCGAGCA	chr8:145106190-145106464(-)$1	274	179	195	9.3446
UGUAUGGAGGAGGGGC	chr5:10262491-10262716(+)$1	225	177	193	7.9822
CGUUCUCCCGCGGCCA	chr1:32827583-32827856(-)$1	273	233	249	9.1927
CGGCAGGUGUGCGGCG	chr8:145737531-145737787(-)$1	256	74	90	8.5060
GUGCCACUGGUUUACC	chr6:33259695-33260047(-)$1	352	300	316	11.9411
CCUGUGAGAGAACUUG	chr1:150531382-150531623(+)$1	241	215	231	8.4966
UGGAGGCCACCAUCAU	chr9:140005100-140005335(-)$1	235	147	163	9.8698
GUAUGGGGUGGGGGGC	chr7:150647088-150647340(-)$1	252	85	101	10.8525
UGGGCCUGCUGAGCUC	chr17:79993818-79994098(-)$1	280	251	267	7.6784
CUCCGCGGGGGCCGCC	chr19:2270329-2270593(+)$1	264	167	183	12.1030

#DB
).)))))))))....(	chr22:50016766-50017051(-)$1	1	244	260	9.0764
))).)))))))))..(	chr16:31201982-31202227(+)$1	1	197	213	8.1720
..((((((((((((.(	chr19:1227712-1228044(+)$1	1	0	16	9.0729
).))))))))))....	chr17:80443423-80443631(+)$1	1	186	202	12.0383
))))))))))).))))	chr17:73823401-73823770(-)$1	1	310	326	7.3121
)))))))))....)).	chr21:45223340-45223615(+)$1	1	175	191	7.4954
..)))))))))..)))	chr6:31639923-31640164(+)$1	1	128	144	10.8704
)))..)))))).))..	chr1:155290189-155290467(+)$1	1	260	276	7.2509
).))))))))).))))	chr10:104180922-104181225(+)$1	1	281	297	12.2446
).))))))))))))))	chr19:18544940-18545222(+)$1	1	237	253	10.5766
).))))))))..)).)	chr7:930551-930797(+)$1	1	227	243	9.7202
)).))))).)).)).)	chr17:76113888-76114164(-)$1	1	239	255	6.4020
).)))))))))....)	chr19:50162936-50163186(-)$1	1	227	243	12.4622
))))))))))).))))	chr14:102515941-102516215(+)$1	1	200	216	10.2186
)))..)))))).).))	chr7:1474135-1474423(-)$1	1	271	287	7.6156
))))))))))).))))	chr11:637327-637590(+)$1	1	165	181	10.1565
.)))))).))).))))	chr19:2425982-2426253(-)$1	1	253	269	7.2818
.)))))))))).))..	chr5:1815888-1816167(+)$1	1	233	249	10.7687
)).)))))))).))))	chr19:1407569-1407878(+)$1	1	280	296	9.0271
))))))))))).))).	chr11:67817006-67817250(+)$1	1	221	237	10.9471
.)))))))))))....	chr17:79526315-79526540(-)$1	1	105	121	8.6229
)))))))))))))).)	chr19:798402-798726(+)$1	1	190	206	10.7386
..(((((((((....(	chr22:20100122-20100380(-)$1	1	55	71	7.8871
).))))))))))))))	chr16:31202298-31202532(+)$1	1	211	227	9.3665
))).))))))).))))	chr22:19865540-19865810(-)$1	1	240	256	7.0570
))))))))))).)).)	chr6:32948375-32948613(+)$1	1	201	217	7.4170
((((((((((((....	chr5:10261727-10261958(+)$1	1	2	18	9.1649
).))))))))))....	chr22:20100593-20100847(-)$1	1	157	173	12.0383
..))))))))))))).	chr11:639269-639549(+)$1	1	234	250	10.1482
)))).)))))).))))	chr1:156109470-156109770(+)$1	1	210	226	7.3730
))))))))))).))).	chr16:23700407-23700691(+)$1	1	170	186	7.1806
).))))))))))))).	chr12:117476878-117477187(-)$1	1	252	268	11.0721
..))))))))).)).)	chr11:639706-639991(+)$1	1	227	243	11.8084
..))))))))).....	chr2:20821927-20822186(-)$1	1	203	219	9.1990
).))))))))).....	chr16:29708606-29708876(+)$1	1	230	246	9.2611
.))).)))))).).))	chr2:74689769-74690015(-)$1	1	105	121	7.5367
).))))))))))....	chr11:290841-291082(+)$1	1	197	213	7.2847
..))))))))))))))	chr7:99751398-99751733(+)$1	1	280	296	9.8645
).)))))))))..)))	chr7:100171695-100171981(-)$1	1	243	259	11.6874
).)))))))))..)))	chr17:46628023-46628315(+)$1	1	276	292	12.0748
))))))))))))))..	chr7:934872-935120(+)$1	1	232	248	7.1857
.((((((((((((((.	chr16:31202251-31202498(+)$1	1	8	24	9.3591
).))))))....))..	chr11:64011358-64011599(+)$1	1	134	150	6.8232
).))))))))).))..	chr19:1468354-1468632(-)$1	1	231	247	12.2743
.)))))))))).))))	chr22:20100027-20100296(-)$1	1	251	267	10.6439
)))))))))))....)	chr18:9337145-9337454(+)$1	1	135	151	11.3917
)))..))))))....)	chr16:31202614-31202843(+)$1	1	210	226	7.3787
.).)))))))).).).	chr8:145106190-145106464(-)$1	1	179	195	9.3446
).)).))))))..)))	chr5:10262491-10262716(+)$1	1	177	193	7.9822
))))))))))))))))	chr1:32827583-32827856(-)$1	1	233	249	9.1927
)))).)))))).)).)	chr8:145737531-145737787(-)$1	1	74	90	8.5060
).)))))))))...))	chr6:33259695-33260047(-)$1	1	300	316	11.9411
).)))))).)..))))	chr1:150531382-150531623(+)$1	1	215	231	8.4966
)).)))))))).)).)	chr9:140005100-140005335(-)$1	1	147	163	9.8698
))))))))))).))))	chr7:150647088-150647340(-)$1	1	85	101	10.8525
.))).)))))).))..	chr17:79993818-79994098(-)$1	1	251	267	7.6784
).))))))))))))))	chr19:2270329-2270593(+)$1	1	167	183	12.1030

#PSSM
C : 0.12	D : 0.10	: : 0.10	B : 0.08	E : 0.08	A : 0.07	J : 0.07	Y : 0.05	H : 0.03	F : 0.03	G : 0.03	c : 0.03	_ : 0.03	~ : 0.03	b : 0.01	g : 0.01	} : 0.01	| : 0.01	d : 0.01	
} : 0.33	J : 0.19	C : 0.08	: : 0.07	E : 0.07	H : 0.05	D : 0.05	F : 0.03	c : 0.03	Y : 0.03	_ : 0.01	A : 0.01	
I : 0.31	J : 0.26	H : 0.08	F : 0.08	} : 0.07	C : 0.07	E : 0.05	D : 0.01	c : 0.01	B : 0.01	
I : 0.31	J : 0.26	H : 0.14	F : 0.07	C : 0.07	Y : 0.05	} : 0.03	E : 0.03	B : 0.01	
I : 0.33	J : 0.26	H : 0.14	} : 0.08	F : 0.07	Y : 0.05	E : 0.03	G : 0.01	
I : 0.33	J : 0.26	F : 0.22	H : 0.14	E : 0.01	G : 0.01	
I : 0.33	J : 0.26	F : 0.22	H : 0.12	E : 0.03	G : 0.01	
I : 0.33	J : 0.26	F : 0.21	H : 0.12	E : 0.03	} : 0.01	G : 0.01	
I : 0.33	J : 0.26	F : 0.15	H : 0.12	} : 0.03	E : 0.01	C : 0.01	G : 0.01	D : 0.01	~ : 0.01	
I : 0.33	J : 0.26	F : 0.15	H : 0.10	~ : 0.03	E : 0.01	B : 0.01	C : 0.01	G : 0.01	D : 0.01	A : 0.01	
I : 0.33	J : 0.26	F : 0.15	H : 0.07	~ : 0.03	Y : 0.03	D : 0.03	E : 0.01	B : 0.01	C : 0.01	G : 0.01	
} : 0.42	J : 0.12	Y : 0.10	~ : 0.08	: : 0.07	D : 0.07	E : 0.03	I : 0.01	C : 0.01	F : 0.01	H : 0.01	Z : 0.01	
B : 0.31	~ : 0.12	: : 0.10	C : 0.10	D : 0.08	Y : 0.07	F : 0.05	A : 0.05	E : 0.03	I : 0.01	H : 0.01	Z : 0.01	
B : 0.35	: : 0.12	C : 0.12	D : 0.12	~ : 0.10	F : 0.05	} : 0.05	E : 0.03	H : 0.01	Z : 0.01	
: : 0.17	C : 0.17	D : 0.15	} : 0.12	~ : 0.10	B : 0.05	F : 0.05	E : 0.05	{ : 0.01	| : 0.01	H : 0.01	Z : 0.01	A : 0.01	? : 0.01	
: : 0.19	D : 0.15	C : 0.14	F : 0.08	E : 0.08	~ : 0.05	d : 0.03	A : 0.03	Y : 0.03	H : 0.03	B : 0.03	| : 0.01	c : 0.01	{ : 0.01	Z : 0.01	G : 0.01	? : 0.01	

#score	536.5183851284878
#seq	57
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_CDS_m1_run2.txt

#BEAR
:ccc[ccc!!a[ccclllccc]a22ccc]ccc	chr15:59182390-59182722(-)$1	332	200	232	11.5734
'=============oooooo============	chr12:80187541-80187809(-)$1	268	27	59	15.9486
cc[ccc!!ccc"""ccclllccc333cccccc	chr11:65836061-65836298(+)$1	237	139	171	13.0849
hh!!ccc"""ddddoooooodddd333ccc22	chr1:24022267-24022492(+)$1	225	181	213	14.9321
aggggggg"""cccooooooccc333gggggg	chr6:33366000-33366264(+)$1	264	42	74	17.6679
$$$bb[ccc####aooooooa4444ccc]bb]	chr17:28612303-28612599(-)$1	296	138	170	15.0086
ffffff[ccc!!bboooooobb22ccc]ffff	chr2:219134588-219134881(-)$1	293	212	244	14.0313
gggggg[ddddcccooooooccc]ddddgggg	chr2:242285511-242285766(+)$1	255	141	173	14.4894
eee:ccc!!eeeeeooooooeeeee333cccd	chrX:71495357-71495619(-)$1	262	156	188	12.1049
eeeeeeee[ccc[bboooooobb22ccc]eee	chr1:156294737-156294980(-)$1	243	111	143	12.2654
=======!!ccc[bblllbb]ccc22======	chr12:53691727-53692035(+)$1	308	185	217	11.6897
cc[===========oooooo===========]	chrX:16887105-16887392(-)$1	287	189	221	16.4467
eeeee[ccc!!cccoooooocccccceeeee2	chr1:93307221-93307444(+)$1	223	97	129	14.6502
!!bb"""bb[a[bboooooobb]a]bb333bb	chr2:15607687-15607928(-)$1	241	19	51	13.9498
$$$===========oooooo===========5	chr1:21073985-21074242(-)$1	257	81	113	15.0067
==========!!bboooooobb]=========	chr1:165728661-165728918(-)$1	257	69	101	16.3751
i[bb"""cccddddoooooodddd22cccbb]	chr19:3984039-3984270(-)$1	231	37	69	13.9946
ddd[bb!!a[ddddoooooodddd]a22bbdd	chr2:174777697-174778095(-)$1	398	197	229	12.7031
fffff$$$$$ddddoooooodddd333fffff	chr3:128889972-128890227(-)$1	255	119	151	13.3436
=========!!cccooooooccc333======	chr17:35310969-35311221(+)$1	252	91	123	18.5591
dddda[bb[ccc[aooooooaccc]bb]a]dd	chrX:118786717-118786980(-)$1	263	132	164	13.8614
c[ccc[ccc"""ddddllldddd22cccccc]	chr10:61566579-61566935(-)$1	356	49	81	11.7969
:ccc[iiiiiiiiiooooooiiiiiiiii]cc	chr1:55643546-55643901(-)$1	355	81	113	14.3974
cc[a####ccccccooooooccc]ccc66666	chr19:18684370-18684659(+)$1	289	29	61	13.8842
ggg[ccc[cccrrrrrrrrrccc22ccc]ggg	chr11:108722775-108723037(+)$1	262	93	125	11.7020
e]agggggggddddoooooodddd]ggggggg	chr12:56504652-56504890(+)$1	238	184	216	13.5530
ddbb[bb!!a!!bboooooobb22a22bb]bb	chr11:94180284-94180602(-)$1	318	119	151	13.4846
ccc####ccc[cccooooooccc22ccc333c	chr11:64537770-64537981(-)$1	211	56	88	17.2428
bbccc:::a!!cccooooooccc22aeeeeeo	chr6:26156864-26157127(+)$1	263	153	185	12.4970
!!=============mmmm=============	chrX:70518218-70518454(+)$1	236	82	114	12.2052
f!!ffffff"""bboooooobb333ffffff2	chr8:56986536-56986763(-)$1	227	28	60	14.3444
cc[ggggggg!!cccnnnnnccc22ggggggg	chr2:172546652-172546874(+)$1	222	106	138	12.6031
ddd"""dddd[cccooooooccc22ddddddd	chr9:132595625-132595897(-)$1	272	88	120	14.4545
:ggggggg"""cccooooooccc4444ggggg	chr10:70532744-70532958(+)$1	214	97	129	16.4188
ddd[a"""ccc[bboooooobb22ccc4444a	chr14:55408199-55408505(-)$1	306	88	120	15.0833
G:ccc[bb"""cccoooooocccbbccc:ddd	chr12:120220241-120220492(-)$1	251	96	128	12.6636
c::ggggggg[cccooooooccc]ggggggg:	chr14:94517581-94517879(-)$1	298	241	273	13.1332
dd[ccc!!dddd!!ccclllccc333dddd]c	chr6:15468672-15468973(+)$1	301	107	139	11.3804
!eeeee[ccc[cccoooooocccccc]eeeee	chr2:73477339-73477591(+)$1	252	164	196	14.4407
cccccccc!!bbbboooooobb]bb22ccc]c	chr16:15092113-15092363(+)$1	250	128	160	13.6317
=========[a!!cccmmmmccc22a]=====	chr9:139717962-139718210(+)$1	248	129	161	12.8189
dddccc[ccc####ccclllccc333ccc]cc	chr16:50359604-50359888(-)$1	284	163	195	12.6831
bb[bb!!ddddcccooooooccc]dddd22bb	chr16:2011084-2011394(+)$1	310	124	156	13.1245
::ccc[a[ccccccooooooccc]ccc]a]cc	chr8:146016570-146016866(-)$1	296	227	259	14.4791
[bb!!ccc"""a[aooooooa]a4444ccc22	chr19:49611446-49611706(+)$1	260	66	98	15.9712
%ccc[ccc"""cccnnnnnccccccccciiii	chr1:19415158-19415412(-)$1	254	52	84	12.0100
[ccc####ffffffooooooffffff22ccc2	chr15:72499400-72499693(-)$1	293	245	277	12.6247
eeeeeccc"""cccoooooocccccc:dddd)	chr15:89790808-89791061(+)$1	253	127	159	13.2025
c[dddd!!dddd[aooooooadddd]ddddcc	chrX:64959522-64959798(+)$1	276	14	46	12.7441
[bb[ccc$$$$$bboooooobb4444ccc22b	chr14:35522489-35522758(+)$1	269	81	113	14.5649

#otherMatches

#Seq PSSM
GGAACGCGAACGCUUGGAAAGGGAACGCAUUC	chr15:59182390-59182722(-)$1	332	200	232	11.5734
aaauaauuuuaaaaaauaaAUUUUGAAAUUAU	chr12:80187541-80187809(-)$1	268	27	59	15.9486
GGAGUUCAAGUUUUAGGUCCCCUCACACUAGC	chr11:65836061-65836298(+)$1	237	139	171	13.0849
GGAGUUGGGAUUUGGGGAUGCAAAAUAUAGUA	chr1:24022267-24022492(+)$1	225	181	213	14.9321
CCUUGUCUUUAUCUUUCCCCAGAAACGGACAA	chr6:33366000-33366264(+)$1	264	42	74	17.6679
ACAGUGGAGCAACCAAAGGAGAAAUCUCGGCC	chr17:28612303-28612599(-)$1	296	138	170	15.0086
AGGCCAUGGGACAGGAGACGCUCACCCCUGGC	chr2:219134588-219134881(-)$1	293	212	244	14.0313
GAGAGGCGGCAGGUCAUCACACUGUGCCCCUU	chr2:242285511-242285766(+)$1	255	141	173	14.4894
UGCAUGCAGCGGUUCAUUAAAAUCGAUGGCAA	chrX:71495357-71495619(-)$1	262	156	188	12.1049
CUGUCUGUAGCUGAGCACUUCCUGGAGCAGCA	chr1:156294737-156294980(-)$1	243	111	143	12.2654
GAGAAGCACGCCAUGAAACAGGGUAAGUUUUU	chr12:53691727-53692035(+)$1	308	185	217	11.6897
ACUAAGUAAGGGUUUCUGGCAACUUUUAUUUU	chrX:16887105-16887392(-)$1	287	189	221	16.4467
GUAGGUGGAACCGUCCCAAAAUGUCCCUUGCU	chr1:93307221-93307444(+)$1	223	97	129	14.6502
AUAGACAUUGACAGUAUCUCCUAUGAAGAGCU	chr2:15607687-15607928(-)$1	241	19	51	13.9498
UUUUUUUUUUCAGUGCAUUUGCUGAAAAAAAC	chr1:21073985-21074242(-)$1	257	81	113	15.0067
UUUUACUGUGUUACUAUGUUGUUUACAGUGGA	chr1:165728661-165728918(-)$1	257	69	101	16.3751
UGUGCAAGGCGGGCAUCAUCGCCUCGGCCCGG	chr19:3984039-3984270(-)$1	231	37	69	13.9946
UUGGCAUUCUGGAGAACGCCCUUUUGUUUGUA	chr2:174777697-174778095(-)$1	398	197	229	12.7031
GCGGUAGAGGUGGCCACAUUGCCAAGGACUGC	chr3:128889972-128890227(-)$1	255	119	151	13.3436
UCUUUUCAGCACUGUGGGACCAGCUCUUGGAA	chr17:35310969-35311221(+)$1	252	91	123	18.5591
ACCUAGUGACUAUGAAGAAGCUGGACAGUAAG	chrX:118786717-118786980(-)$1	263	132	164	13.8614
UGGAUAUGAUUGCAUGAAACAUGGUUUAAUUG	chr10:61566579-61566935(-)$1	356	49	81	11.7969
AUCCCUUUUCGUCAGAAGAAUGAUGAGAAUGG	chr1:55643546-55643901(-)$1	355	81	113	14.3974
GAGCUCCCCUGCAGAGGACACUGCCAGUAAUA	chr19:18684370-18684659(+)$1	289	29	61	13.8842
CUUGUCUCCAGGAGAAAAGACUGAAAGAAAGG	chr11:108722775-108723037(+)$1	262	93	125	11.7020
AGGAGGGUGAGUUCCAAAAAGAGCUUCACUUU	chr12:56504652-56504890(+)$1	238	184	216	13.5530
UCUCAGCAGCAACCAACAAAGGAAGAGGCCGA	chr11:94180284-94180602(-)$1	318	119	151	13.4846
AGAGAAGUCGGUGCAGAAUAGUAAACGGGAGU	chr11:64537770-64537981(-)$1	211	56	88	17.2428
GCGGCGAAGAAGCCCAAGAAGGCGACGGGGGC	chr6:26156864-26157127(+)$1	263	153	185	12.4970
GUAUUUUUUGUUUUUCAGAGAGAGCAGGAGAU	chrX:70518218-70518454(+)$1	236	82	114	12.2052
CAUGUAUCUAAUAAUAGGCUUUUAAGGAUACC	chr8:56986536-56986763(-)$1	227	28	60	14.3444
aggaaaaaaaaagaaGUAUGUUUGAUUUUUUU	chr2:172546652-172546874(+)$1	222	106	138	12.6031
UUGCUUUCUGCAGGAUGAUCCCUUUCAGAUGA	chr9:132595625-132595897(-)$1	272	88	120	14.4545
AGGAUGAAGAAGAUGGUAUGAUUGAAAUUUAU	chr10:70532744-70532958(+)$1	214	97	129	16.4188
UUUACAAAGGUGUGGGCUAACAAAGCCAAAGG	chr14:55408199-55408505(-)$1	306	88	120	15.0833
GAGGAUGACAAAGCACUGCAGCUUCUCCAUGA	chr12:120220241-120220492(-)$1	251	96	128	12.6636
GAGUCUGCUUUGAGCUGUCUCUCCAAGCAGAA	chr14:94517581-94517879(-)$1	298	241	273	13.1332
UGCGCUGCCCAACAGCAUGGUGUAUUUUGGAA	chr6:15468672-15468973(+)$1	301	107	139	11.3804
UUUAUGGAGGAGACAGAGCGGUCCCUGCAUGA	chr2:73477339-73477591(+)$1	252	164	196	14.4407
UCCAGGCCCACUCCAGGGCAGGUAGGUGGCAC	chr16:15092113-15092363(+)$1	250	128	160	13.6317
CAUCCACUGGAGCUACAAGAGUAAGUGUGGUG	chr9:139717962-139718210(+)$1	248	129	161	12.8189
GCAAGGAUGAUUCUGAUUUAAUCUAUUCAACC	chr16:50359604-50359888(-)$1	284	163	195	12.6831
CCGCCGCGUGCCAGACAUCACUGAGUGCAAGG	chr16:2011084-2011394(+)$1	310	124	156	13.1245
AUGCUGAGGGCUGUGGGUGAACAUGCugugag	chr8:146016570-146016866(-)$1	296	227	259	14.4791
gcgagcacaaacggggggagcggggcagugag	chr19:49611446-49611706(+)$1	260	66	98	15.9712
CCUGACGUAAACAAGAAGAUUGACGCAGCCCG	chr1:19415158-19415412(-)$1	254	52	84	12.0100
CACAUUCUCAUGUGCACACUCGCAUGUUUGUA	chr15:72499400-72499693(-)$1	293	245	277	12.6247
UUUCUUCAAACCCUGAGAGAAGGUGAUGUGAG	chr15:89790808-89791061(+)$1	253	127	159	13.2025
GGAGGUAAAAUGAGAGAAAGCCAUUGACCUCU	chrX:64959522-64959798(+)$1	276	14	46	12.7441
AGUGGUGAAACAAUGGAAGAAUAUAGCACAGA	chr14:35522489-35522758(+)$1	269	81	113	14.5649

#DB
.(((.(((..(.(((...))).)..))).)))	chr15:59182390-59182722(-)$1	1	200	232	11.5734
.(((((((((((((......))))))))))))	chr12:80187541-80187809(-)$1	1	27	59	15.9486
((.(((..(((...(((...)))...))))))	chr11:65836061-65836298(+)$1	1	139	171	13.0849
((..(((...((((......))))...)))..	chr1:24022267-24022492(+)$1	1	181	213	14.9321
((((((((...(((......)))...))))))	chr6:33366000-33366264(+)$1	1	42	74	17.6679
...((.(((....(......)....))).)).	chr17:28612303-28612599(-)$1	1	138	170	15.0086
((((((.(((..((......))..))).))))	chr2:219134588-219134881(-)$1	1	212	244	14.0313
((((((.(((((((......))).))))))))	chr2:242285511-242285766(+)$1	1	141	173	14.4894
))).(((..(((((......)))))...)))(	chrX:71495357-71495619(-)$1	1	156	188	12.1049
)))(((((.(((.((......))..))).)))	chr1:156294737-156294980(-)$1	1	111	143	12.2654
(((((((..(((.((...)).)))..))))))	chr12:53691727-53692035(+)$1	1	185	217	11.6897
((.(((((((((((......))))))))))).	chrX:16887105-16887392(-)$1	1	189	221	16.4467
(((((.(((..(((......))))))))))).	chr1:93307221-93307444(+)$1	1	97	129	14.6502
..((...((.(.((......)).).))...))	chr2:15607687-15607928(-)$1	1	19	51	13.9498
...(((((((((((......))))))))))).	chr1:21073985-21074242(-)$1	1	81	113	15.0067
((((((((((..((......)).)))))))))	chr1:165728661-165728918(-)$1	1	69	101	16.3751
(.((...(((((((......))))..))))).	chr19:3984039-3984270(-)$1	1	37	69	13.9946
(((.((..(.((((......)))).)..))))	chr2:174777697-174778095(-)$1	1	197	229	12.7031
(((((.....((((......))))...)))))	chr3:128889972-128890227(-)$1	1	119	151	13.3436
(((((((((..(((......)))...))))))	chr17:35310969-35311221(+)$1	1	91	123	18.5591
(((((.((.(((.(......)))).)).).))	chrX:118786717-118786980(-)$1	1	132	164	13.8614
(.(((.(((...((((...))))..)))))).	chr10:61566579-61566935(-)$1	1	49	81	11.7969
.(((.(((((((((......))))))))).))	chr1:55643546-55643901(-)$1	1	81	113	14.3974
((.(....((((((......))).))).....	chr19:18684370-18684659(+)$1	1	29	61	13.8842
(((.(((.(((.........)))..))).)))	chr11:108722775-108723037(+)$1	1	93	125	11.7020
).)(((((((((((......)))).)))))))	chr12:56504652-56504890(+)$1	1	184	216	13.5530
))((.((..(..((......))..)..)).))	chr11:94180284-94180602(-)$1	1	119	151	13.4846
(((....(((.(((......)))..)))...)	chr11:64537770-64537981(-)$1	1	56	88	17.2428
)))))...(..(((......)))..)(((((.	chr6:26156864-26157127(+)$1	1	153	185	12.4970
..(((((((((((((....)))))))))))))	chrX:70518218-70518454(+)$1	1	82	114	12.2052
(..((((((...((......))...)))))).	chr8:56986536-56986763(-)$1	1	28	60	14.3444
((.(((((((..(((.....)))..)))))))	chr2:172546652-172546874(+)$1	1	106	138	12.6031
(((...((((.(((......)))..)))))))	chr9:132595625-132595897(-)$1	1	88	120	14.4545
.(((((((...(((......)))....)))))	chr10:70532744-70532958(+)$1	1	97	129	16.4188
(((.(...(((.((......))..)))....)	chr14:55408199-55408505(-)$1	1	88	120	15.0833
(.(((.((...(((......)))))))).(((	chr12:120220241-120220492(-)$1	1	96	128	12.6636
)..(((((((.(((......))).))))))).	chr14:94517581-94517879(-)$1	1	241	273	13.1332
((.(((..((((..(((...)))...)))).)	chr6:15468672-15468973(+)$1	1	107	139	11.3804
.(((((.(((.(((......)))))).)))))	chr2:73477339-73477591(+)$1	1	164	196	14.4407
((((((((..((((......)).))..))).)	chr16:15092113-15092363(+)$1	1	128	160	13.6317
(((((((((.(..(((....)))..).)))))	chr9:139717962-139718210(+)$1	1	129	161	12.8189
)))(((.(((....(((...)))...))).))	chr16:50359604-50359888(-)$1	1	163	195	12.6831
((.((..(((((((......))).))))..))	chr16:2011084-2011394(+)$1	1	124	156	13.1245
..(((.(.((((((......))).))).).))	chr8:146016570-146016866(-)$1	1	227	259	14.4791
.((..(((...(.(......).)....)))..	chr19:49611446-49611706(+)$1	1	66	98	15.9712
.(((.(((...(((.....)))))))))))))	chr1:19415158-19415412(-)$1	1	52	84	12.0100
.(((....((((((......))))))..))).	chr15:72499400-72499693(-)$1	1	245	277	12.6247
)))))(((...(((......)))))).((((.	chr15:89790808-89791061(+)$1	1	127	159	13.2025
(.((((..((((.(......))))).))))))	chrX:64959522-64959798(+)$1	1	14	46	12.7441
.((.(((.....((......))....)))..)	chr14:35522489-35522758(+)$1	1	81	113	14.5649

#PSSM
c : 0.18	d : 0.14	e : 0.10	: : 0.08	= : 0.08	f : 0.06	! : 0.06	[ : 0.06	$ : 0.04	g : 0.04	b : 0.04	' : 0.02	h : 0.02	a : 0.02	i : 0.02	G : 0.02	% : 0.02	
c : 0.19	d : 0.14	= : 0.10	e : 0.10	g : 0.08	b : 0.08	! : 0.06	[ : 0.06	: : 0.06	$ : 0.04	f : 0.04	h : 0.02	] : 0.02	
c : 0.19	= : 0.12	[ : 0.12	d : 0.12	e : 0.10	b : 0.10	g : 0.08	! : 0.04	$ : 0.04	f : 0.04	a : 0.02	: : 0.02	
c : 0.23	= : 0.16	g : 0.12	b : 0.10	e : 0.08	[ : 0.08	f : 0.06	! : 0.04	d : 0.04	: : 0.02	a : 0.02	# : 0.02	" : 0.02	
c : 0.23	= : 0.16	g : 0.12	[ : 0.08	e : 0.08	b : 0.06	f : 0.06	" : 0.06	# : 0.06	a : 0.04	! : 0.02	d : 0.02	
c : 0.23	= : 0.16	g : 0.12	[ : 0.12	" : 0.08	# : 0.06	f : 0.04	e : 0.04	b : 0.04	$ : 0.02	i : 0.02	: : 0.02	! : 0.02	d : 0.02	
c : 0.23	= : 0.16	! : 0.10	g : 0.10	[ : 0.08	" : 0.06	b : 0.06	# : 0.06	e : 0.02	$ : 0.02	i : 0.02	: : 0.02	f : 0.02	d : 0.02	a : 0.02	
c : 0.25	= : 0.14	! : 0.14	g : 0.10	d : 0.06	b : 0.06	" : 0.04	$ : 0.04	# : 0.04	[ : 0.04	e : 0.02	i : 0.02	: : 0.02	f : 0.02	
c : 0.25	= : 0.14	" : 0.14	! : 0.10	d : 0.10	g : 0.06	[ : 0.04	a : 0.04	$ : 0.04	f : 0.04	b : 0.02	i : 0.02	
c : 0.25	" : 0.18	! : 0.10	= : 0.10	d : 0.10	[ : 0.06	g : 0.06	$ : 0.04	# : 0.02	e : 0.02	i : 0.02	a : 0.02	f : 0.02	
d : 0.18	c : 0.16	" : 0.16	! : 0.14	= : 0.08	[ : 0.08	a : 0.06	# : 0.04	e : 0.02	i : 0.02	b : 0.02	f : 0.02	$ : 0.02	
c : 0.38	d : 0.14	! : 0.10	= : 0.08	[ : 0.06	" : 0.06	# : 0.04	e : 0.02	i : 0.02	r : 0.02	b : 0.02	a : 0.02	f : 0.02	$ : 0.02	
c : 0.36	b : 0.16	d : 0.12	[ : 0.10	= : 0.08	# : 0.04	! : 0.04	" : 0.02	e : 0.02	i : 0.02	r : 0.02	f : 0.02	
c : 0.38	b : 0.19	d : 0.12	= : 0.08	a : 0.08	" : 0.02	e : 0.02	i : 0.02	r : 0.02	! : 0.02	# : 0.02	f : 0.02	
o : 0.76	c : 0.12	b : 0.04	d : 0.02	r : 0.02	= : 0.02	n : 0.02	
o : 0.78	c : 0.08	l : 0.04	n : 0.04	d : 0.02	r : 0.02	m : 0.02	
o : 0.78	l : 0.06	c : 0.06	m : 0.04	n : 0.04	r : 0.02	
o : 0.78	l : 0.12	m : 0.04	n : 0.04	r : 0.02	
o : 0.78	l : 0.08	m : 0.04	n : 0.04	c : 0.02	b : 0.02	r : 0.02	
o : 0.78	l : 0.06	c : 0.04	b : 0.02	d : 0.02	r : 0.02	= : 0.02	n : 0.02	m : 0.02	
c : 0.46	b : 0.16	d : 0.12	= : 0.08	a : 0.08	e : 0.02	o : 0.02	] : 0.02	i : 0.02	f : 0.02	
c : 0.48	b : 0.18	d : 0.14	= : 0.08	] : 0.04	4 : 0.02	e : 0.02	i : 0.02	f : 0.02	
c : 0.48	d : 0.14	= : 0.08	2 : 0.06	] : 0.06	a : 0.04	4 : 0.04	e : 0.02	b : 0.02	i : 0.02	3 : 0.02	f : 0.02	
2 : 0.23	3 : 0.12	d : 0.12	c : 0.12	= : 0.10	] : 0.10	4 : 0.08	b : 0.04	e : 0.02	a : 0.02	i : 0.02	f : 0.02	
2 : 0.21	3 : 0.16	c : 0.16	= : 0.10	4 : 0.08	] : 0.08	d : 0.06	b : 0.04	e : 0.02	i : 0.02	a : 0.02	g : 0.02	f : 0.02	
c : 0.30	3 : 0.16	= : 0.10	2 : 0.08	d : 0.06	a : 0.06	g : 0.06	4 : 0.06	b : 0.04	f : 0.04	i : 0.02	] : 0.02	
c : 0.32	= : 0.14	d : 0.10	g : 0.08	2 : 0.08	3 : 0.06	e : 0.04	b : 0.04	4 : 0.04	] : 0.04	i : 0.02	f : 0.02	: : 0.02	
c : 0.30	= : 0.16	d : 0.12	g : 0.10	] : 0.06	e : 0.06	3 : 0.04	2 : 0.04	f : 0.04	i : 0.02	6 : 0.02	b : 0.02	4 : 0.02	
c : 0.19	= : 0.16	g : 0.12	] : 0.08	d : 0.08	f : 0.06	e : 0.06	3 : 0.04	b : 0.04	a : 0.04	i : 0.04	6 : 0.02	4 : 0.02	: : 0.02	2 : 0.02	
c : 0.16	= : 0.16	g : 0.14	] : 0.10	d : 0.10	e : 0.08	b : 0.06	f : 0.06	3 : 0.04	2 : 0.04	6 : 0.02	4 : 0.02	i : 0.02	
c : 0.18	= : 0.16	g : 0.14	b : 0.10	d : 0.10	e : 0.08	2 : 0.06	f : 0.06	] : 0.04	6 : 0.02	3 : 0.02	4 : 0.02	i : 0.02	
c : 0.18	= : 0.12	g : 0.12	2 : 0.10	d : 0.10	] : 0.08	b : 0.08	f : 0.04	e : 0.04	5 : 0.02	6 : 0.02	o : 0.02	a : 0.02	: : 0.02	i : 0.02	) : 0.02	

#score	694.8290656293683
#seq	50
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_transcript_m2_run1.txt

#BEAR
gggg"""dddd####bbmmmmbb333dddd333ggggggg	chr17:80858430-80858711(+)$1	281	102	142	12.6492
ii"""gggggggfffffflllffffff]ggggggg]iiii	chr10:70864269-70864527(+)$1	258	69	109	11.6502
===####dddd[ddddoooooodddd22dddd4444====	chr12:133129608-133129878(+)$1	270	135	175	15.0550
eee[cccccc!!a[cccnnnnnccc]a22ccc]ccc]eee	chr2:198351393-198351647(-)$1	254	43	83	16.6763
=======[bb!!eeeeeooooooeeeeebb==========	chr22:46239587-46239919(+)$1	332	292	332	14.3028
iiiiiiiccc"""cccooooooccc333ccc>>>>>>>>>	chr6:170844123-170844436(-)$1	313	175	215	15.8954
Deeeee$$$$$a!!cccnnnnnccc22a22eeeee:iiii	chrX:119010429-119010670(+)$1	241	22	62	13.3295
eeeee!!eeeee"""bboooooobb333eeeee22eeeee	chr11:14479027-14479296(-)$1	269	147	187	13.2265
gggggg[bb[gggggggnnnnnggggggg]bbggggggg:	chr19:1815423-1815684(-)$1	261	174	214	12.6976
!ggggggg[dddd[ccclllccc]dddd]ggggggg]ccc	chr14:102547751-102547999(-)$1	248	157	197	13.6076
E:ffffff[bb"""cccnnnnnccc333bb]ffffff:ee	chr1:150532726-150533005(+)$1	279	67	107	12.8955
!ccc"""ccc[a[cccooooooccc]a]ccc22ccc]fff	chr22:50040314-50040542(-)$1	228	172	212	15.9975
gggg[eeeee!!ddddoooooodddd22eeeeeggggggg	chr12:57031906-57032153(-)$1	247	204	244	14.3555
ggg[ccc[dddd[a[cccmmmmccc]a]dddd]ccc]ggg	chr5:70503831-70504057(-)$1	226	4	44	13.1347
!ggggggg[dddd[ccclllccc]dddd]ggggggg]ccc	chr14:102547722-102547930(-)$1	208	88	128	13.6076
iiiiiii[a!!cccqqqqqqqqccc333a]iiiiiiiii]	chr22:50037504-50037758(-)$1	254	97	137	12.9533
[bb!!ccc[bb[cccaooooooa]cccbb]ccc]bb]fff	chr19:36139150-36139402(+)$1	252	172	212	13.0008
dddd[ggggggg!!cccoooooocccggggggg]dddd]d	chr19:4034442-4034715(+)$1	273	145	185	14.1716
[bb[ccc####bbddddnnnnndddd22bb4444ccc]bb	chr3:123632525-123632817(-)$1	292	105	145	14.1447
a[bb"""ccc[a!!cccnnnnnccc]a]ccc]bb]a]ccc	chr6:26158670-26158918(+)$1	248	30	70	16.5435
###iiiiiiiii!!ddddllldddd22iiiiiiiii333b	chr5:115249308-115249563(+)$1	255	65	105	15.2522
===========xxxxxxxxxxxxxxx===========]a]	chr22:45736594-45736837(+)$1	243	70	110	13.6500
ccc!!==========bbmmmmbb]==========22ccc:	chr5:132091800-132092064(-)$1	264	170	210	12.1345
eeeeeddddbb[acccooooooccc]a]bb]ddddccccc	chr1:220141966-220142201(-)$1	235	17	57	13.0370
========[a####cccnnnnnccc333a]==========	chr17:65336684-65336949(-)$1	265	36	76	20.7974
!a[bb[ccc[gggggggnnnnngggggggccc]bb]a444	chr2:10540072-10540330(+)$1	258	169	209	13.3144
%==========="""bbnnnnnbb333===========66	chr1:245004315-245004532(-)$1	217	131	171	17.0242
e[a[affffff[ccccccmmmmccc22ccc]ffffff444	chr22:50030431-50030653(-)$1	222	143	183	12.2534
fffffccc!!a[eeeeennnnneeeeea22ccc333ffff	chr6:32148231-32148544(+)$1	313	107	147	12.7279
ccc[ggggggg"""cccnnnnnccc4444gggggggccc]	chr18:211190-211479(+)$1	289	9	49	18.0555
ff[ccc####ccc[cccnnnnnccc22ccc4444ccc]ff	chr11:77327275-77327550(-)$1	275	231	271	16.6046
ggggggg!!bb[a[cccooooooccc]abbgggggggggg	chr3:47892178-47892429(-)$1	251	29	69	15.5707
[ccc[ccc[dddd[cccnnnnnccc]ddddccc]ccc]ff	chr19:4034590-4034877(+)$1	287	9	49	15.4661
ggggg"""dddd"""cccmmmmccc333dddd4444gggg	chr5:133726127-133726383(+)$1	256	92	132	15.0926
dddccc[dddd!!ddddnnnnndddd333dddd]ccc]dd	chr7:913670-913917(+)$1	247	167	207	14.7767
[eeeeeeeeee"""cccnnnnnccc333eeeee4444eee	chr14:102547566-102547795(-)$1	229	97	137	16.7973
!ffffff!!a"""ddddmmmmdddd333a]ffffff22bb	chr7:128498805-128499065(+)$1	260	44	84	12.8074
!eeeee[ddddbbddddnnnnndddd333bb333dddd]e	chr20:47905488-47905776(+)$1	288	69	109	13.7275
hhccc"""eeeee[cccnnnnnccc]eeeee333ccc]hh	chr12:120899406-120899706(-)$1	300	153	193	14.9317
"""ccc[ccc!!ddddoooooodddd22ccc]ccc333gg	chr12:69995013-69995261(+)$1	248	119	159	15.6621
eeee####iiiiiiiiiooooooiiiiiiiii4444eeee	chr11:5269274-5269516(-)$1	242	48	88	14.1478
eeee$$$$$ccc!!ccclllccc]ccc333eeeeedddd[	chr20:47897340-47897593(+)$1	253	125	165	12.3439
+ccc[============nnnnn============]ccc33	chr21:46576579-46576926(+)$1	347	222	262	16.1806
[dddd[dddd!!ddddoooooodddd333dddd22dddd]	chr1:227174734-227175027(+)$1	293	74	114	13.1238
=====[ccc$$$$$bboooooobb22ccc]==========	chr7:7676357-7676706(-)$1	349	85	125	15.1514
:==========!!ddddmmmmdddd333==========EE	chr9:136131545-136131767(-)$1	222	157	197	13.6349
###dddd"""a!!ddddnnnnndddd22a333dddd4444	chr16:89028435-89028706(-)$1	271	117	157	15.0751
g$$$$$eeeee"""cccnnnnnccc22eeeeegggggggc	chr4:761192-761440(-)$1	248	118	158	15.6448
f"""ffffff####cccnnnnncccffffff4444fffff	chr5:256549-256803(+)$1	254	70	110	14.7028
:===========!!cccooooooccc22===========:	chr16:85706943-85707197(+)$1	254	162	202	17.0435
!===============bbmmmmbb333=============	chr11:116649432-116649686(-)$1	254	128	168	15.3913
!ggggggg[dddd[ccclllccc]dddd]ggggggg]ccc	chr14:102547701-102547922(-)$1	221	80	120	13.6076
)iiiiiiiii####cccnnnnnccc55555iiiiiiiii0	chr19:10800089-10800383(+)$1	294	221	261	14.4964
dd[eeeee[a!!ccc[ccclllccc]ccc]a]eeeee22d	chr5:6599662-6599936(-)$1	274	22	62	12.0138

#otherMatches

#Seq PSSM
UAUUGCCGGCUUUCCUGAGUACACGCAGCCAAUGAUAGAC	chr17:80858430-80858711(+)$1	281	102	142	12.6492
UUUACAGGGUGGAGUGUACUAUAUACUAUUACCUUUGAAU	chr10:70864269-70864527(+)$1	258	69	109	11.6502
GACAAAAGUGCAGGGAGCGGCGUCCCAGGUGCCACCGUCU	chr12:133129608-133129878(+)$1	270	135	175	15.0550
UGGUUUACUGCUGUCAUUGUCCAUGCCUACAGAUAAUUUA	chr2:198351393-198351647(-)$1	254	43	83	16.6763
UGGCUUGACUGUGUUUGUCCCUUCAGAUGGCAAGUCAGCA	chr22:46239587-46239919(+)$1	332	292	332	14.3028
ACUUUGGAACUGUACCUUGGAUGGUUUUGUUUAUUAAAAG	chr6:170844123-170844436(-)$1	313	175	215	15.8954
UUCUCCUUUUUAAACUGUUUUUCAGGGUUUGGAGAACAUU	chrX:119010429-119010670(+)$1	241	22	62	13.3295
UGUUUCAUGUACCAAGACCCUUUUCACAGUACAAUAAACA	chr11:14479027-14479296(-)$1	269	147	187	13.2265
GGCUGGACCCGCCUCUGUGCUCCAGGGGCUGGCCGGUCUU	chr19:1815423-1815684(-)$1	261	174	214	12.6976
UCAUGUUGGUUUAUUUUCACAGAUUGGGGUAACGUGCACU	chr14:102547751-102547999(-)$1	248	157	197	13.6076
CAGAGGGUGGCAAGGUGACUGACACAAAGUGACUUUCAGG	chr1:150532726-150533005(+)$1	279	67	107	12.8955
GGCAGAUGCUGUUGGACUUACCUCCUAGGGCCAUGUGGCU	chr22:50040314-50040542(-)$1	228	172	212	15.9975
UUCUCUUGGUUCUGACAACAUAGUCAACACUGAAGGGUUA	chr12:57031906-57032153(-)$1	247	204	244	14.3555
AUGAGAGUGCCUGGGAGUGGUCAUUGUGGGGCCUUCCCGU	chr5:70503831-70504057(-)$1	226	4	44	13.1347
UCAUGUUGGUUUAUUUUCACAGAUUGGGGUAACGUGCACU	chr14:102547722-102547930(-)$1	208	88	128	13.6076
UCCAUGGGUGGAGGGAGGUGAGCCUGAAGGCUGUGGGGCA	chr22:50037504-50037758(-)$1	254	97	137	12.9533
UGUAACCUGGGACCCCAGUCUAGCGGGCUGAGGAGCCGGA	chr19:36139150-36139402(+)$1	252	172	212	13.0008
AGUCCUUUGGGCCGGGCACGUGGGCUGCCUGAAUGGCUGC	chr19:4034442-4034715(+)$1	273	145	185	14.1716
UCUCCCUUCAUGUAAGCAGCACGUUUUAACUCUUAGGAAG	chr3:123632525-123632817(-)$1	292	105	145	14.1447
CUGCUUCCGGGGGAGCUGGCCAAGCACGCCGUGUCGGAGG	chr6:26158670-26158918(+)$1	248	30	70	16.5435
UUUAAAGAAAUUGAGUAGUUCCUAUGUGAUUUUUUUUUUU	chr5:115249308-115249563(+)$1	255	65	105	15.2522
CAAAGAGAAAAUACGAAAUAGACACuuuuuuuuuuugagu	chr22:45736594-45736837(+)$1	243	70	110	13.6500
GUAAAUGUGGGCUCCCUGUUAAGUGGGGCUCAUGGAUACG	chr5:132091800-132092064(-)$1	264	170	210	12.1345
UGCCAAGUACUACACCUUAUUUGGUCGCAGCUACUGAGGG	chr1:220141966-220142201(-)$1	235	17	57	13.0370
AAAAGACUGUUAUAAUGGUGUAUAUGUUGGGGUUUUUUUU	chr17:65336684-65336949(-)$1	265	36	76	20.7974
gggacgggcgugcuucuagcuaaggagcagcuggugcaaa	chr2:10540072-10540330(+)$1	258	169	209	13.3144
GGGAUGUCUGUCACUCUAGGGCGGCAAGACAGACAUUUAA	chr1:245004315-245004532(-)$1	217	131	171	17.0242
UGUGGACCUGCGUCUGUGUCAACACCGAGGGGCGGGUGGG	chr22:50030431-50030653(-)$1	222	143	183	12.2534
AGGAUGGAUUGAGAGAAUGUCUUUCUCCUCUCCUAAGUCU	chr6:32148231-32148544(+)$1	313	107	147	12.7279
UGGUGGUGGAGACUGGCAUAUCGCUUACGUUCUACUCUAU	chr18:211190-211479(+)$1	289	9	49	18.0555
AGCCUUUUAGGUUAGUUUCUGUAACAGAACAAGUGAGUCU	chr11:77327275-77327550(-)$1	275	231	271	16.6046
GGAGUGGUCAGAGUUCCCUCAAAGGAUCCUCCACUCCAGA	chr3:47892178-47892429(-)$1	251	29	69	15.5707
CGGGCACGUGGGCUGCCUGAAUGGCUGCUCUGUUCCCAGC	chr19:4034590-4034877(+)$1	287	9	49	15.4661
UUGCAUGGUGUGAACUAAGUUAUUGCUGCAUAAAUUUGUA	chr5:133726127-133726383(+)$1	256	92	132	15.0926
GUCUGGUGUGUCAGGGUCACGAACCCGUUACAUUUCAGGA	chr7:913670-913917(+)$1	247	167	207	14.7767
UAUCUUGAUGUUUAGAAAAGUAUUCGUUACAUCUUGUAGG	chr14:102547566-102547795(-)$1	229	97	137	16.7973
AGGGGCUGGCGAGGGCUGCGAGGCCAGGGAAGCCCUGAGU	chr7:128498805-128499065(+)$1	260	44	84	12.8074
AUUGUAAUCCACCUUCUUUCUUAGAAACUGGCGAUGGAAU	chr20:47905488-47905776(+)$1	288	69	109	13.7275
UGCUCUACUAUGGAGAUCAACAGUUACUGUGACUGAGUCG	chr12:120899406-120899706(-)$1	300	153	193	14.9317
ACCAGUUUCUAGCAAAGUUGUGUUUGAAAGAUACUCUAUU	chr12:69995013-69995261(+)$1	248	119	159	15.6621
UUUUAAAUAUAUGAGCCACAAAGGGUUUAUAUUGAGGGAA	chr11:5269274-5269516(-)$1	242	48	88	14.1478
GUUGAUCUUGGCUUGAUUCAGUCUGCCUUGUAACAGGUGA	chr20:47897340-47897593(+)$1	253	125	165	12.3439
AUUUGUCACUGCUGCACUGUAUGUGUAGUAGUGGGGAGGG	chr21:46576579-46576926(+)$1	347	222	262	16.1806
GAUACGAUUGUGGGAUUUUAUCAUCUGUGUAGUAGGUGUG	chr1:227174734-227175027(+)$1	293	74	114	13.1238
AUUUUCAUACGAUUGUAAAUGAGCUAUAUUAAAGUCUAUU	chr7:7676357-7676706(-)$1	349	85	125	15.1514
CUGUCAGUGCUGGAGGUGCGCGCCUACAAGCGCUGGCAGG	chr9:136131545-136131767(-)$1	222	157	197	13.6349
AUGCCCAGCGCUGAGUGUCGGUUACUAUGGAAUGGGAAUG	chr16:89028435-89028706(-)$1	271	117	157	15.0751
UGGCUUCUUGGAAAGCCUGAAUGGUGGCCAAGGACCACCU	chr4:761192-761440(-)$1	248	118	158	15.6448
AUACGCUUCUGCACUCUGGGGAAGAAGGAGUACAUUGAAG	chr5:256549-256803(+)$1	254	70	110	14.7028
CUUUUAGUGUUUGUACUGCUGCUGGUCAGGACAUUAAAAU	chr16:85706943-85707197(+)$1	254	162	202	17.0435
AGUGUCUUUCCCACCAGCCCUUGCCCAUGGUGGGGAGGAC	chr11:116649432-116649686(-)$1	254	128	168	15.3913
UCAUGUUGGUUUAUUUUCACAGAUUGGGGUAACGUGCACU	chr14:102547701-102547922(-)$1	221	80	120	13.6076
GUUACAGAAGGGAUACGUCAUUUGUUAAUGCUUUUGUGAA	chr19:10800089-10800383(+)$1	294	221	261	14.4964
AGACUGGUGGGAUCAUAGGAGCCUUCUGAAUGACCAGGAC	chr5:6599662-6599936(-)$1	274	22	62	12.0138

#DB
((((...((((....((....))...))))...)))))))	chr17:80858430-80858711(+)$1	1	102	142	12.6492
((...(((((((((((((...)))))).))))))).))))	chr10:70864269-70864527(+)$1	1	69	109	11.6502
(((....((((.((((......))))..))))....))))	chr12:133129608-133129878(+)$1	1	135	175	15.0550
(((.((((((..(.(((.....))).)..))).))).)))	chr2:198351393-198351647(-)$1	1	43	83	16.6763
(((((((.((..(((((......)))))))))))))))))	chr22:46239587-46239919(+)$1	1	292	332	14.3028
((((((((((...(((......)))...))).........	chr6:170844123-170844436(-)$1	1	175	215	15.8954
((((((.....(..(((.....)))..)..))))).((((	chrX:119010429-119010670(+)$1	1	22	62	13.3295
(((((..(((((...((......))...)))))..)))))	chr11:14479027-14479296(-)$1	1	147	187	13.2265
((((((.((.(((((((.....))))))).))))))))).	chr19:1815423-1815684(-)$1	1	174	214	12.6976
.(((((((.((((.(((...))).)))).))))))).)))	chr14:102547751-102547999(-)$1	1	157	197	13.6076
(.((((((.((...(((.....)))...)).)))))).((	chr1:150532726-150533005(+)$1	1	67	107	12.8955
.(((...(((.(.(((......))).).)))..))).)))	chr22:50040314-50040542(-)$1	1	172	212	15.9975
((((.(((((..((((......))))..))))))))))))	chr12:57031906-57032153(-)$1	1	204	244	14.3555
(((.(((.((((.(.(((....))).).)))).))).)))	chr5:70503831-70504057(-)$1	1	4	44	13.1347
.(((((((.((((.(((...))).)))).))))))).)))	chr14:102547722-102547930(-)$1	1	88	128	13.6076
(((((((.(..(((........)))...).))))))))).	chr22:50037504-50037758(-)$1	1	97	137	12.9533
.((..(((.((.((((......).))))).))).)).)))	chr19:36139150-36139402(+)$1	1	172	212	13.0008
((((.(((((((..(((......)))))))))).)))).)	chr19:4034442-4034715(+)$1	1	145	185	14.1716
.((.(((....((((((.....))))..))....))).))	chr3:123632525-123632817(-)$1	1	105	145	14.1447
(.((...(((.(..(((.....))).).))).)).).)))	chr6:26158670-26158918(+)$1	1	30	70	16.5435
...(((((((((..((((...))))..)))))))))...)	chr5:115249308-115249563(+)$1	1	65	105	15.2522
(((((((((((...............))))))))))).).	chr22:45736594-45736837(+)$1	1	70	110	13.6500
(((..((((((((((((....)).))))))))))..))).	chr5:132091800-132092064(-)$1	1	170	210	12.1345
)))))((((((.((((......))).).)).))))(((((	chr1:220141966-220142201(-)$1	1	17	57	13.0370
((((((((.(....(((.....)))...).))))))))))	chr17:65336684-65336949(-)$1	1	36	76	20.7974
.(.((.(((.(((((((.....)))))))))).)).)...	chr2:10540072-10540330(+)$1	1	169	209	13.3144
.(((((((((((...((.....))...)))))))))))..	chr1:245004315-245004532(-)$1	1	131	171	17.0242
(.(.(((((((.((((((....)))..))).))))))...	chr22:50030431-50030653(-)$1	1	143	183	12.2534
((((((((..(.(((((.....))))))..)))...))))	chr6:32148231-32148544(+)$1	1	107	147	12.7279
(((.(((((((...(((.....)))....)))))))))).	chr18:211190-211479(+)$1	1	9	49	18.0555
((.(((....(((.(((.....)))..)))....))).))	chr11:77327275-77327550(-)$1	1	231	271	16.6046
(((((((..((.(.(((......))).)))))))))))))	chr3:47892178-47892429(-)$1	1	29	69	15.5707
.(((.(((.((((.(((.....))).))))))).))).))	chr19:4034590-4034877(+)$1	1	9	49	15.4661
(((((...((((...(((....)))...))))....))))	chr5:133726127-133726383(+)$1	1	92	132	15.0926
((((((.((((..((((.....))))...)))).))).))	chr7:913670-913917(+)$1	1	167	207	14.7767
.((((((((((...(((.....)))...)))))....)))	chr14:102547566-102547795(-)$1	1	97	137	16.7973
.((((((..(...((((....))))...).))))))..))	chr7:128498805-128499065(+)$1	1	44	84	12.8074
.(((((.((((((((((.....))))...))...)))).)	chr20:47905488-47905776(+)$1	1	69	109	13.7275
(((((...(((((.(((.....))).)))))...))).))	chr12:120899406-120899706(-)$1	1	153	193	14.9317
...(((.(((..((((......))))..))).)))...))	chr12:69995013-69995261(+)$1	1	119	159	15.6621
((((....(((((((((......)))))))))....))))	chr11:5269274-5269516(-)$1	1	48	88	14.1478
((((.....(((..(((...))).)))...)))))((((.	chr20:47897340-47897593(+)$1	1	125	165	12.3439
.(((.((((((((((((.....)))))))))))).)))..	chr21:46576579-46576926(+)$1	1	222	262	16.1806
.((((.((((..((((......))))...))))..)))).	chr1:227174734-227175027(+)$1	1	74	114	13.1238
(((((.(((.....((......))..))).))))))))))	chr7:7676357-7676706(-)$1	1	85	125	15.1514
.((((((((((..((((....))))...))))))))))))	chr9:136131545-136131767(-)$1	1	157	197	13.6349
...((((...(..((((.....))))..)...))))....	chr16:89028435-89028706(-)$1	1	117	157	15.0751
(.....(((((...(((.....)))..)))))))))))))	chr4:761192-761440(-)$1	1	118	158	15.6448
(...((((((....(((.....)))))))))....)))))	chr5:256549-256803(+)$1	1	70	110	14.7028
.(((((((((((..(((......)))..))))))))))).	chr16:85706943-85707197(+)$1	1	162	202	17.0435
.(((((((((((((((((....))...)))))))))))))	chr11:116649432-116649686(-)$1	1	128	168	15.3913
.(((((((.((((.(((...))).)))).))))))).)))	chr14:102547701-102547922(-)$1	1	80	120	13.6076
.(((((((((....(((.....))).....))))))))).	chr19:10800089-10800383(+)$1	1	221	261	14.4964
((.(((((.(..(((.(((...))).))).).)))))..)	chr5:6599662-6599936(-)$1	1	22	62	12.0138

#PSSM
! : 0.14	g : 0.12	e : 0.11	= : 0.09	[ : 0.09	i : 0.05	d : 0.05	f : 0.05	# : 0.03	c : 0.03	: : 0.03	D : 0.01	E : 0.01	a : 0.01	% : 0.01	h : 0.01	" : 0.01	+ : 0.01	) : 0.01	
g : 0.16	= : 0.16	e : 0.14	c : 0.09	i : 0.07	d : 0.07	f : 0.05	b : 0.03	[ : 0.03	# : 0.03	" : 0.03	: : 0.01	a : 0.01	h : 0.01	$ : 0.01	
g : 0.16	= : 0.16	e : 0.14	c : 0.11	" : 0.05	i : 0.05	f : 0.05	b : 0.05	d : 0.05	[ : 0.05	# : 0.03	a : 0.01	$ : 0.01	
g : 0.14	= : 0.14	e : 0.14	c : 0.12	[ : 0.09	i : 0.07	f : 0.05	d : 0.05	" : 0.03	! : 0.03	b : 0.03	# : 0.01	$ : 0.01	
= : 0.14	c : 0.12	g : 0.12	e : 0.11	" : 0.07	i : 0.07	f : 0.07	[ : 0.07	# : 0.03	! : 0.03	$ : 0.03	d : 0.03	b : 0.01	a : 0.01	
c : 0.16	= : 0.16	g : 0.14	" : 0.09	e : 0.09	i : 0.07	f : 0.07	[ : 0.05	# : 0.03	d : 0.03	$ : 0.03	! : 0.01	
= : 0.16	c : 0.14	g : 0.12	" : 0.09	i : 0.07	[ : 0.07	f : 0.07	e : 0.07	# : 0.05	d : 0.05	$ : 0.03	! : 0.01	
c : 0.18	= : 0.14	d : 0.11	g : 0.11	e : 0.09	[ : 0.05	f : 0.05	# : 0.05	" : 0.05	$ : 0.03	i : 0.03	! : 0.03	b : 0.01	
d : 0.14	[ : 0.14	c : 0.12	= : 0.12	e : 0.09	g : 0.05	i : 0.05	! : 0.05	b : 0.03	$ : 0.03	# : 0.03	f : 0.03	a : 0.01	" : 0.01	
d : 0.20	= : 0.12	c : 0.11	b : 0.09	e : 0.09	g : 0.05	i : 0.05	a : 0.05	$ : 0.03	[ : 0.03	! : 0.03	# : 0.03	f : 0.03	" : 0.01	
d : 0.18	! : 0.12	= : 0.12	g : 0.09	e : 0.07	b : 0.07	# : 0.07	" : 0.03	$ : 0.03	[ : 0.03	i : 0.03	a : 0.03	c : 0.03	f : 0.01	
! : 0.16	[ : 0.11	" : 0.11	d : 0.11	= : 0.09	# : 0.07	g : 0.07	a : 0.05	c : 0.05	e : 0.03	b : 0.03	i : 0.03	x : 0.01	$ : 0.01	
" : 0.16	! : 0.16	d : 0.14	c : 0.09	# : 0.07	a : 0.05	e : 0.05	= : 0.05	g : 0.03	[ : 0.03	b : 0.03	f : 0.01	x : 0.01	i : 0.01	$ : 0.01	
d : 0.18	[ : 0.14	c : 0.12	" : 0.12	! : 0.11	# : 0.07	= : 0.05	e : 0.03	g : 0.03	f : 0.01	a : 0.01	x : 0.01	i : 0.01	$ : 0.01	
c : 0.48	d : 0.20	" : 0.05	= : 0.05	e : 0.03	g : 0.03	# : 0.01	f : 0.01	[ : 0.01	q : 0.01	x : 0.01	i : 0.01	b : 0.01	
c : 0.48	d : 0.20	b : 0.09	e : 0.03	g : 0.03	= : 0.03	f : 0.01	q : 0.01	a : 0.01	x : 0.01	i : 0.01	[ : 0.01	
c : 0.44	o : 0.16	d : 0.12	b : 0.09	e : 0.03	g : 0.03	f : 0.01	q : 0.01	x : 0.01	i : 0.01	= : 0.01	
n : 0.40	o : 0.27	m : 0.07	l : 0.07	c : 0.07	f : 0.01	q : 0.01	d : 0.01	x : 0.01	b : 0.01	
n : 0.40	o : 0.27	m : 0.14	l : 0.11	q : 0.01	x : 0.01	c : 0.01	
n : 0.40	o : 0.27	m : 0.14	l : 0.12	q : 0.01	x : 0.01	
n : 0.40	o : 0.27	m : 0.14	c : 0.07	l : 0.05	q : 0.01	x : 0.01	
n : 0.40	o : 0.27	c : 0.07	m : 0.07	d : 0.05	b : 0.03	f : 0.01	q : 0.01	x : 0.01	l : 0.01	
c : 0.46	d : 0.20	o : 0.11	b : 0.09	g : 0.03	f : 0.01	a : 0.01	x : 0.01	e : 0.01	= : 0.01	
c : 0.44	d : 0.20	] : 0.11	b : 0.07	e : 0.03	g : 0.03	3 : 0.01	f : 0.01	x : 0.01	i : 0.01	= : 0.01	
c : 0.48	d : 0.25	3 : 0.05	e : 0.03	g : 0.03	= : 0.03	f : 0.01	b : 0.01	x : 0.01	i : 0.01	2 : 0.01	
3 : 0.22	d : 0.20	] : 0.14	2 : 0.11	c : 0.09	f : 0.03	e : 0.03	g : 0.03	= : 0.03	x : 0.01	4 : 0.01	i : 0.01	5 : 0.01	
3 : 0.25	2 : 0.20	d : 0.09	a : 0.09	c : 0.07	e : 0.05	g : 0.05	= : 0.05	f : 0.03	4 : 0.01	] : 0.01	i : 0.01	5 : 0.01	
3 : 0.24	2 : 0.12	d : 0.09	] : 0.09	= : 0.09	c : 0.07	e : 0.05	a : 0.05	g : 0.05	i : 0.03	b : 0.01	4 : 0.01	f : 0.01	5 : 0.01	
c : 0.14	= : 0.12	b : 0.11	d : 0.09	e : 0.09	g : 0.07	a : 0.07	3 : 0.07	2 : 0.05	] : 0.05	i : 0.03	4 : 0.01	f : 0.01	5 : 0.01	
c : 0.14	d : 0.12	] : 0.12	= : 0.12	g : 0.11	b : 0.11	e : 0.09	2 : 0.03	i : 0.03	3 : 0.03	f : 0.01	5 : 0.01	
= : 0.18	c : 0.16	g : 0.12	e : 0.12	d : 0.09	i : 0.07	] : 0.05	3 : 0.03	b : 0.03	4 : 0.03	f : 0.03	a : 0.01	
= : 0.18	g : 0.12	d : 0.11	e : 0.11	c : 0.09	3 : 0.07	i : 0.07	f : 0.05	4 : 0.05	] : 0.05	> : 0.01	b : 0.01	2 : 0.01	
= : 0.18	g : 0.16	4 : 0.11	e : 0.11	c : 0.07	d : 0.07	3 : 0.05	] : 0.05	f : 0.05	i : 0.05	> : 0.01	2 : 0.01	b : 0.01	
g : 0.18	= : 0.18	4 : 0.12	c : 0.07	] : 0.07	e : 0.05	f : 0.05	i : 0.05	3 : 0.05	2 : 0.03	b : 0.03	d : 0.03	> : 0.01	
g : 0.18	c : 0.16	= : 0.14	4 : 0.09	d : 0.07	e : 0.05	2 : 0.05	f : 0.05	i : 0.05	b : 0.03	] : 0.03	> : 0.01	3 : 0.01	
c : 0.18	g : 0.16	= : 0.14	d : 0.09	4 : 0.07	f : 0.07	i : 0.05	] : 0.03	e : 0.03	3 : 0.03	> : 0.01	: : 0.01	b : 0.01	a : 0.01	2 : 0.01	
= : 0.16	c : 0.16	] : 0.14	g : 0.11	i : 0.07	f : 0.07	d : 0.07	e : 0.05	3 : 0.03	4 : 0.03	> : 0.01	a : 0.01	2 : 0.01	
= : 0.14	c : 0.14	g : 0.12	] : 0.11	i : 0.07	e : 0.07	f : 0.07	d : 0.07	4 : 0.05	3 : 0.03	2 : 0.03	> : 0.01	: : 0.01	
g : 0.14	c : 0.12	= : 0.11	f : 0.11	e : 0.09	i : 0.07	4 : 0.05	d : 0.05	] : 0.03	b : 0.03	3 : 0.03	> : 0.01	a : 0.01	6 : 0.01	h : 0.01	E : 0.01	2 : 0.01	
g : 0.11	e : 0.11	c : 0.11	f : 0.11	= : 0.09	] : 0.07	: : 0.05	d : 0.05	b : 0.05	4 : 0.05	i : 0.03	> : 0.01	6 : 0.01	h : 0.01	[ : 0.01	3 : 0.01	E : 0.01	0 : 0.01	

#score	782.1379002448097
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_CDS_m2_run1.txt

#BEAR
iiiiiii[ddddoooooodddd22iiiiiiii	chr6:30670785-30671035(-)$1	250	30	62	14.2044
fff[eeeee[cccooooooccceeeeefffff	chr16:70302145-70302374(-)$1	229	99	131	14.2989
""ccc[ccc[bboooooobbccc]ccc333cc	chr10:75529555-75529801(+)$1	246	136	168	14.4820
eeee[dddd[cccooooooccc]dddd22eee	chr1:237052469-237052737(+)$1	268	168	200	14.7494
:==========bboooooobb]==========	chr2:96967309-96967549(-)$1	240	111	143	14.5890
""ccc[a[eeeeeooooooeeeeea]cccccc	chr21:33706412-33706692(-)$1	280	163	195	14.3343
c[bb!!a[eeeeeooooooeeeee]a22bbcc	chr8:48826381-48826590(-)$1	209	7	39	13.1371
e"""a[gggggggooooooggggggg]a]eee	chr2:136603835-136604061(-)$1	226	33	65	14.9279
eeeeeccc[ddddoooooodddd]ccc]eeee	chr2:11484088-11484347(-)$1	259	19	51	14.5229
ee[cccbb!!cccoooooocccbb]ccc]eee	chr11:68181260-68181528(+)$1	268	137	169	15.3529
+++++ccc!!cccooooooccc]ccc]ggggg	chr5:33460906-33461157(+)$1	251	94	126	13.6061
g"""iiiiiiiiiooooooiiiiiiiiigggg	chr1:220156551-220156785(-)$1	234	137	169	15.2638
!!ccc[ccc!!cccooooooccc]ccc]ccc5	chr9:35703461-35703675(-)$1	214	57	89	14.7667
!!bb[ffffffbboooooobb333ffffff]b	chr5:154193472-154193688(+)$1	216	118	150	13.5708
d[cccdddd[cccooooooccc22dddd22cc	chr12:6702564-6702784(-)$1	220	169	201	15.8648
cca[dddd[acccooooooccc]a]dddd]a]	chr12:120590985-120591227(-)$1	242	118	150	15.3359
ffffff[ccc[bboooooobb333ccc22fff	chr1:39907796-39908045(+)$1	249	35	67	14.2050
!!dddd!!eeeeeooooooeeeeedddd]fff	chr22:23523523-23523776(+)$1	253	191	223	13.1271
ee[bb[ccc[ccc[aooooooa]ccc]ccc22	chr9:139733306-139733567(+)$1	261	88	120	12.6224
2iiiiiiiiicccoooooocccbb[aeeeee[	chr14:102483202-102483436(+)$1	234	83	115	13.8376
iiiiiibb[ddddoooooodddd]bb4444ii	chr10:71075632-71075864(+)$1	232	104	136	14.8256
"dddd[bb[ddddooooooddddbb]dddd22	chr12:56532122-56532346(+)$1	224	41	73	12.9376
ffffff####cccooooooccc22ffffff::	chr17:7415036-7415276(+)$1	240	111	143	13.9637
ccc[bb!!a[cccooooooccc]a22bb]ccc	chr11:62293016-62293250(-)$1	234	167	199	15.1273
ffffff####cccooooooccc]ffffff:dd	chr3:58087829-58088093(+)$1	264	41	73	14.0719
iii[ccc[eeeeeooooooeeeeeccc]iiii	chr6:86324876-86325143(-)$1	267	226	258	14.5159
dd[a!!bb!!cccooooooccc22bb4444a]	chr12:6702535-6702764(-)$1	229	119	151	17.1193
g$$$$$bb!!cccooooooccc22bbgggggg	chr1:19484363-19484588(-)$1	225	90	122	16.2661
e"""bb####cccooooooccc4444bb]eee	chr3:184021365-184021611(+)$1	246	127	159	15.9866
!ccc!!bb[a[bboooooobb]a]bb4444cc	chr19:39138219-39138532(+)$1	313	150	182	14.8631
iiiii[ccc[cccooooooccc22ccciiiii	chr16:85690126-85690369(+)$1	243	158	190	17.6844
b$$$$$cccddddoooooodddd]ccc]bbgg	chr19:52716103-52716350(+)$1	247	151	183	13.7171
ccceeeee!!cccooooooccceeeeeddddn	chr11:118307121-118307419(+)$1	298	116	148	14.2222
dddd"""dddd[aooooooa]dddd333dddd	chr5:154135608-154135852(+)$1	244	188	220	13.5375
c"""ffffffcccooooooccc333ffffff4	chr2:54785840-54786092(+)$1	252	149	181	15.8959
dddd!!a!!ddddoooooodddd22a22dddd	chr2:48010484-48010734(+)$1	250	175	207	14.5738
d[ggggggg"""cccmmmmccc22ggggggg]	chr20:36776257-36776538(-)$1	281	204	236	10.9666
ddd[eeeee[cccooooooccc333eeeee33	chr8:48743120-48743358(-)$1	238	34	66	16.0644
e"""ccc[ddddoooooodddd22ccc22eee	chr17:80044975-80045201(-)$1	226	140	172	14.2342
dd[ffffff[cccooooooccc]ffffff]dd	chr21:34922753-34922990(+)$1	237	177	209	14.8568
ggggg####ddddoooooodddd]gggggggD	chr12:124884953-124885248(-)$1	295	182	214	14.0842
i[ccc[bb"""bboooooobb4444bbcccii	chrX:53230776-53231026(-)$1	250	192	224	15.1265
c!!dddd[eeeeeooooooeeeee]dddd22c	chr6:30680708-30680996(-)$1	288	192	224	12.8870
c[dddddddd[bboooooobb]dddd]dddd]	chr3:184019650-184019901(+)$1	251	198	230	12.7066
[bb[eeeee[cccooooooccc]eeeee]bb]	chr17:7412225-7412468(+)$1	243	70	102	14.6439
eeeee$$$$$cccooooooccc22eeeee22d	chr19:10793116-10793394(+)$1	278	237	269	14.8681
===========cccnnnnnccc22========	chr11:62303388-62303662(-)$1	274	116	148	13.0236
##cccccc!!cccooooooccc22ccc]ccc5	chr12:120584822-120585077(-)$1	255	197	229	16.9878
=====[ccc[ddddnnnnndddd]ccc]====	chr17:78301515-78301789(+)$1	274	151	183	11.6187
ddd"""bb!!cccooooooccc22bb333ddd	chr2:15432716-15432976(-)$1	260	18	50	17.0445
[dddd[bb[a!!bboooooobb22a]bb]ddd	chr16:70599185-70599495(+)$1	310	108	140	12.8508
"ggggggg!!cccooooooccc22ggggggg0	chr14:23564178-23564430(-)$1	252	42	74	16.8485
dddd!!eeeeebboooooobb]eeeee]dddd	chr6:31750207-31750416(-)$1	209	58	90	13.1964
ee[dddd[ccc[bboooooobb22cccdddde	chr17:38145894-38146166(+)$1	272	142	174	12.9013

#otherMatches

#Seq PSSM
GAAGUCUGGCUGGUUCAGCGGCAGAGGCUUCC	chr6:30670785-30671035(-)$1	250	30	62	14.2044
UUGAGACGGAUUCUCCGCCGAGCUGUCCGAUA	chr16:70302145-70302374(-)$1	229	99	131	14.2989
CCGUGCCUAUGUCCGACAGCUAGUUACCUCCA	chr10:75529555-75529801(+)$1	246	136	168	14.4820
UUAGUGCAGUAAGUCCUUCCUUUCUGCCUCUG	chr1:237052469-237052737(+)$1	268	168	200	14.7494
GUGGGGCAGCUGAUGAAGUUCUAGCUGUUCUA	chr2:96967309-96967549(-)$1	240	111	143	14.5890
CCGGAUGAUGCAGACCAUCCUGCACUUCCCCC	chr21:33706412-33706692(-)$1	280	163	195	14.3343
GACAGAGAGAAGCGGCUGAGCUUUGCAGUGCC	chr8:48826381-48826590(-)$1	209	7	39	13.1371
UAAAUGCUUGACAAGGGGAUGUUAAGGGCACA	chr2:136603835-136604061(-)$1	226	33	65	14.9279
GUGCUAGGCCCCGAGGCUGCGGGACCUGAGCG	chr2:11484088-11484347(-)$1	259	19	51	14.5229
GCUGUGCCUUGCCAUCCCCGGCGGCCACCGCU	chr11:68181260-68181528(+)$1	268	137	169	15.3529
CUUCAGCCUUAUGUUUGAUCAUCGGCCAAGGU	chr5:33460906-33461157(+)$1	251	94	126	13.6061
GGACUUUUUUGAUGCUGAGAUCAAGAAACUUG	chr1:220156551-220156785(-)$1	234	137	169	15.2638
AGGCCACCAAAGGCACUCGGGCCCUGGAGGCA	chr9:35703461-35703675(-)$1	214	57	89	14.7667
CAGCCUGUCCGGGAAGAUGCCAAAUGGACAAG	chr5:154193472-154193688(+)$1	216	118	150	13.5708
CAUUCGUGGUGGCAAGAAGGCCUCCCGCAUGA	chr12:6702564-6702784(-)$1	220	169	201	15.8648
GGCUCUCUGGCCAAGCACCUGGACAAGAGUGA	chr12:120590985-120591227(-)$1	242	118	150	15.3359
AAGUUUACCAACAGCAAAUUGAGAUGGAGAAG	chr1:39907796-39908045(+)$1	249	35	67	14.2050
AAGGUCAACGACAAAGAGGUGUCGGACCGCAU	chr22:23523523-23523776(+)$1	253	191	223	13.1271
GCAGGGUUCCAGGACGAUGUGGACCUCGAAGA	chr9:139733306-139733567(+)$1	261	88	120	12.6224
GGCAAGACCAUGACACUCUUCAGCGCCCUCCG	chr14:102483202-102483436(+)$1	234	83	115	13.8376
GCCCUGUCGAGGUGCUGAGGCCUGGGAGAUUG	chr10:71075632-71075864(+)$1	232	104	136	14.8256
CCAGCCCCGUGUGCCCCUCCACAGGUGCUGCA	chr12:56532122-56532346(+)$1	224	41	73	12.9376
GUGCGGAAGGCCCUGGAGCGGGAGCUGUACCA	chr17:7415036-7415276(+)$1	240	111	143	13.9637
GAUGUUAACAUUGAAGGACCAGAGGGAAAGUU	chr11:62293016-62293250(-)$1	234	167	199	15.1273
CUUUCACGACUCUGACUAAAGAAUGAAAGAUU	chr3:58087829-58088093(+)$1	264	41	73	14.0719
UAUCGUGGUGGAUAUGAAGAUCCAUACUAUGG	chr6:86324876-86325143(-)$1	267	226	258	14.5159
AGAGAAUGAGUUCUCCUUUGAAGACAAUGCCA	chr12:6702535-6702764(-)$1	229	119	151	17.1193
UUGCCAGGUUCCCACCUUAGGGUCCCAGGAAG	chr1:19484363-19484588(-)$1	225	90	122	16.2661
ACCCAGAUUGACAAGUACCUGUACUCCUCUGA	chr3:184021365-184021611(+)$1	246	127	159	15.9866
AGCGAGAGGCGGCGGAAUGGUGGACUACCACG	chr19:39138219-39138532(+)$1	313	150	182	14.8631
GGUGGGCUGUGCUGGGCAAGGUCUCAGCCACC	chr16:85690126-85690369(+)$1	243	158	190	17.6844
GCUUCUGCCCCAGGAGGAUCUGGAGGCCCUGG	chr19:52716103-52716350(+)$1	247	151	183	13.7171
GCUGUCGGUGGCGCUUCCCCGCCCGACCCGGG	chr11:118307121-118307419(+)$1	298	116	148	14.2222
GGGGACAUGGGAGUCCCCUCCCCCAGCACCUC	chr5:154135608-154135852(+)$1	244	188	220	13.5375
CAACCAGCUGGAAGGCAGAUUCAAGCAGCUGC	chr2:54785840-54786092(+)$1	252	149	181	15.8959
CGGGGGCAUAGCGGCGGGGCGCUUGGAACCCG	chr2:48010484-48010734(+)$1	250	175	207	14.5738
GCGGGGCCUACAGGGGGCUCCCGCAGGCCUCU	chr20:36776257-36776538(-)$1	281	204	236	10.9666
CUUCUUCUUUGGUUCUGGUGCUUAUAGGAAAU	chr8:48743120-48743358(-)$1	238	34	66	16.0644
CACACUGAGUCGGCCCCGCGGCGGCAGCAGGA	chr17:80044975-80045201(-)$1	226	140	172	14.2342
CACCACAGGAGGUACCAGAGCCACCUGUGAUG	chr21:34922753-34922990(+)$1	237	177	209	14.8568
CCAGCAGAGCGCCGAGCUGGGUGAGCUGGGGG	chr12:124884953-124885248(-)$1	295	182	214	14.0842
CUGCCCAGAGAAGCUAGACCUGAACCUGGCGG	chrX:53230776-53231026(-)$1	250	192	224	15.1265
UGACAGCAGGCCUCCUGGAAGGCCAGCUGAGG	chr6:30680708-30680996(-)$1	288	192	224	12.8870
UAUCUCACCAGGUGAGUGAACAUGGUAGGGAA	chr3:184019650-184019901(+)$1	251	198	230	12.7066
AGGAAGGUGACUGCCAACACAGCCAUCUACUA	chr17:7412225-7412468(+)$1	243	70	102	14.6439
GCCUUUCCCUCAGAUGCCACUGCCGAGGUGAG	chr19:10793116-10793394(+)$1	278	237	269	14.8681
GAGCUGCUGCUGCCCAACUGGCAGGGUAGUGG	chr11:62303388-62303662(-)$1	274	116	148	13.0236
CAUGUACUCCCUGACAGACCAGAAGGUAGCGG	chr12:120584822-120585077(-)$1	255	197	229	16.9878
UAGCUGUUGCCGACUCUGUGUUGACGAAAGUU	chr17:78301515-78301789(+)$1	274	151	183	11.6187
AUUUGUUACUCACUUGCUCGUGUUUGUAUGAU	chr2:15432716-15432976(-)$1	260	18	50	17.0445
ACACUGGUGAAGACUGGUAUGUGCUGGUGGGU	chr16:70599185-70599495(+)$1	310	108	140	12.8508
AGGGCGUUGGCGGAAAUUACCGAAGAUGCCCG	chr14:23564178-23564430(-)$1	252	42	74	16.8485
GGGGACUGUUCCGUGGCAUUGAGGACAACCCC	chr6:31750207-31750416(-)$1	209	58	90	13.1964
AGACGGGCAGGCCACCCUGUUGAACCUCCUGC	chr17:38145894-38146166(+)$1	272	142	174	12.9013

#DB
(((((((.((((......))))..))))))))	chr6:30670785-30671035(-)$1	1	30	62	14.2044
(((.(((((.(((......)))))))))))))	chr16:70302145-70302374(-)$1	1	99	131	14.2989
..(((.(((.((......))))).)))...))	chr10:75529555-75529801(+)$1	1	136	168	14.4820
((((.((((.(((......))).))))..)))	chr1:237052469-237052737(+)$1	1	168	200	14.7494
.((((((((((((......)).))))))))))	chr2:96967309-96967549(-)$1	1	111	143	14.5890
..(((.(.(((((......)))))).))))))	chr21:33706412-33706692(-)$1	1	163	195	14.3343
(.((..(.(((((......))))).)..))))	chr8:48826381-48826590(-)$1	1	7	39	13.1371
(...(.(((((((......))))))).).)))	chr2:136603835-136604061(-)$1	1	33	65	14.9279
((((((((.((((......)))).))).))))	chr2:11484088-11484347(-)$1	1	19	51	14.5229
((.(((((..(((......))))).))).)))	chr11:68181260-68181528(+)$1	1	137	169	15.3529
.....(((..(((......))).))).)))))	chr5:33460906-33461157(+)$1	1	94	126	13.6061
(...(((((((((......)))))))))))))	chr1:220156551-220156785(-)$1	1	137	169	15.2638
..(((.(((..(((......))).))).))).	chr9:35703461-35703675(-)$1	1	57	89	14.7667
..((.((((((((......))...)))))).)	chr5:154193472-154193688(+)$1	1	118	150	13.5708
(.(((((((.(((......)))..))))..))	chr12:6702564-6702784(-)$1	1	169	201	15.8648
(((.((((.((((......))).).)))).).	chr12:120590985-120591227(-)$1	1	118	150	15.3359
((((((.(((.((......))...)))..)))	chr1:39907796-39908045(+)$1	1	35	67	14.2050
..((((..(((((......))))))))).)))	chr22:23523523-23523776(+)$1	1	191	223	13.1271
((.((.(((.(((.(......).))).)))..	chr9:139733306-139733567(+)$1	1	88	120	12.6224
.)))))))))(((......)))((.((((((.	chr14:102483202-102483436(+)$1	1	83	115	13.8376
((((((((.((((......)))).))....))	chr10:71075632-71075864(+)$1	1	104	136	14.8256
.((((.((.((((......)))))).))))..	chr12:56532122-56532346(+)$1	1	41	73	12.9376
((((((....(((......)))..))))))..	chr17:7415036-7415276(+)$1	1	111	143	13.9637
(((.((..(.(((......))).)..)).)))	chr11:62293016-62293250(-)$1	1	167	199	15.1273
((((((....(((......))).)))))).((	chr3:58087829-58088093(+)$1	1	41	73	14.0719
(((.(((.(((((......)))))))).))))	chr6:86324876-86325143(-)$1	1	226	258	14.5159
((.(..((..(((......)))..))....).	chr12:6702535-6702764(-)$1	1	119	151	17.1193
(.....((..(((......)))..))))))))	chr1:19484363-19484588(-)$1	1	90	122	16.2661
(...((....(((......)))....)).)))	chr3:184021365-184021611(+)$1	1	127	159	15.9866
.(((..((.(.((......)).).))....))	chr19:39138219-39138532(+)$1	1	150	182	14.8631
(((((.(((.(((......)))..))))))))	chr16:85690126-85690369(+)$1	1	158	190	17.6844
(.....(((((((......)))).))).))))	chr19:52716103-52716350(+)$1	1	151	183	13.7171
)))(((((..(((......))))))))((((.	chr11:118307121-118307419(+)$1	1	116	148	14.2222
((((...((((.(......).))))...))))	chr5:154135608-154135852(+)$1	1	188	220	13.5375
(...(((((((((......)))...)))))).	chr2:54785840-54786092(+)$1	1	149	181	15.8959
((((..(..((((......))))..)..))))	chr2:48010484-48010734(+)$1	1	175	207	14.5738
(.(((((((...(((....)))..))))))).	chr20:36776257-36776538(-)$1	1	204	236	10.9666
(((.(((((.(((......)))...)))))..	chr8:48743120-48743358(-)$1	1	34	66	16.0644
(...(((.((((......))))..)))..)))	chr17:80044975-80045201(-)$1	1	140	172	14.2342
((.((((((.(((......))).)))))).))	chr21:34922753-34922990(+)$1	1	177	209	14.8568
(((((....((((......)))).))))))))	chr12:124884953-124885248(-)$1	1	182	214	14.0842
(.(((.((...((......))....)))))))	chrX:53230776-53231026(-)$1	1	192	224	15.1265
(..((((.(((((......))))).))))..)	chr6:30680708-30680996(-)$1	1	192	224	12.8870
(.((((((((.((......)).)))).)))).	chr3:184019650-184019901(+)$1	1	198	230	12.7066
.((.(((((.(((......))).))))).)).	chr17:7412225-7412468(+)$1	1	70	102	14.6439
(((((.....(((......)))..)))))..)	chr19:10793116-10793394(+)$1	1	237	269	14.8681
((((((((((((((.....)))..))))))))	chr11:62303388-62303662(-)$1	1	116	148	13.0236
..((((((..(((......)))..))).))).	chr12:120584822-120585077(-)$1	1	197	229	16.9878
(((((.(((.((((.....)))).))).))))	chr17:78301515-78301789(+)$1	1	151	183	11.6187
(((...((..(((......)))..))...)))	chr2:15432716-15432976(-)$1	1	18	50	17.0445
.((((.((.(..((......))..).)).)))	chr16:70599185-70599495(+)$1	1	108	140	12.8508
.(((((((..(((......)))..))))))).	chr14:23564178-23564430(-)$1	1	42	74	16.8485
((((..(((((((......)).))))).))))	chr6:31750207-31750416(-)$1	1	58	90	13.1964
((.((((.(((.((......))..))))))))	chr17:38145894-38146166(+)$1	1	142	174	12.9013

#PSSM
e : 0.16	d : 0.16	c : 0.12	i : 0.09	f : 0.07	" : 0.07	! : 0.07	g : 0.05	[ : 0.03	= : 0.03	: : 0.01	+ : 0.01	2 : 0.01	b : 0.01	# : 0.01	
d : 0.16	" : 0.12	e : 0.11	i : 0.09	[ : 0.09	f : 0.07	! : 0.07	c : 0.07	= : 0.05	$ : 0.03	g : 0.03	+ : 0.01	b : 0.01	# : 0.01	
c : 0.16	d : 0.16	i : 0.09	" : 0.09	[ : 0.09	f : 0.07	e : 0.05	= : 0.05	b : 0.05	g : 0.05	$ : 0.03	+ : 0.01	a : 0.01	! : 0.01	
d : 0.16	c : 0.14	[ : 0.11	" : 0.11	i : 0.07	e : 0.07	f : 0.07	= : 0.05	b : 0.05	g : 0.05	$ : 0.03	+ : 0.01	a : 0.01	
c : 0.16	d : 0.12	e : 0.11	i : 0.09	! : 0.09	f : 0.09	= : 0.05	b : 0.05	g : 0.05	[ : 0.03	$ : 0.03	" : 0.03	a : 0.01	+ : 0.01	
[ : 0.18	d : 0.12	c : 0.11	f : 0.11	! : 0.09	i : 0.07	e : 0.07	$ : 0.05	= : 0.03	b : 0.03	" : 0.03	g : 0.03	# : 0.01	
c : 0.20	b : 0.16	d : 0.11	e : 0.09	# : 0.07	i : 0.05	a : 0.05	g : 0.05	f : 0.05	= : 0.03	! : 0.03	[ : 0.01	" : 0.01	$ : 0.01	
c : 0.18	b : 0.16	[ : 0.12	e : 0.09	d : 0.09	# : 0.07	g : 0.05	f : 0.05	! : 0.05	= : 0.03	i : 0.03	$ : 0.01	
e : 0.16	! : 0.16	c : 0.14	d : 0.11	[ : 0.11	# : 0.07	f : 0.05	= : 0.03	g : 0.03	i : 0.03	a : 0.01	" : 0.01	$ : 0.01	
[ : 0.20	d : 0.18	! : 0.16	e : 0.11	a : 0.05	# : 0.05	= : 0.03	i : 0.03	f : 0.03	c : 0.03	" : 0.03	g : 0.01	$ : 0.01	
c : 0.46	d : 0.18	e : 0.11	[ : 0.05	= : 0.03	! : 0.03	" : 0.03	b : 0.01	g : 0.01	i : 0.01	f : 0.01	
c : 0.48	d : 0.16	b : 0.14	e : 0.09	[ : 0.03	g : 0.01	i : 0.01	" : 0.01	! : 0.01	
c : 0.49	b : 0.16	d : 0.12	e : 0.09	o : 0.05	g : 0.01	i : 0.01	a : 0.01	
o : 0.87	c : 0.05	b : 0.03	[ : 0.01	d : 0.01	
o : 0.92	n : 0.03	a : 0.01	c : 0.01	
o : 0.94	n : 0.03	m : 0.01	
o : 0.94	n : 0.03	m : 0.01	
o : 0.94	n : 0.03	m : 0.01	
o : 0.88	d : 0.03	n : 0.03	b : 0.01	m : 0.01	
c : 0.46	d : 0.16	b : 0.14	e : 0.09	o : 0.07	g : 0.01	i : 0.01	a : 0.01	
c : 0.49	d : 0.16	b : 0.16	e : 0.09	g : 0.01	i : 0.01	o : 0.01	] : 0.01	
c : 0.49	d : 0.18	e : 0.09	] : 0.07	3 : 0.03	b : 0.03	g : 0.01	i : 0.01	a : 0.01	4 : 0.01	
2 : 0.27	d : 0.16	e : 0.14	] : 0.14	3 : 0.07	c : 0.03	b : 0.03	4 : 0.03	= : 0.01	g : 0.01	i : 0.01	a : 0.01	
2 : 0.29	e : 0.16	] : 0.14	3 : 0.07	d : 0.05	b : 0.05	c : 0.03	a : 0.03	f : 0.03	4 : 0.03	= : 0.01	g : 0.01	i : 0.01	
c : 0.24	b : 0.11	e : 0.09	d : 0.09	] : 0.07	g : 0.07	f : 0.07	i : 0.03	= : 0.03	a : 0.03	2 : 0.03	4 : 0.03	3 : 0.03	[ : 0.01	
c : 0.25	e : 0.11	d : 0.11	b : 0.11	f : 0.09	g : 0.07	] : 0.05	a : 0.05	i : 0.03	= : 0.03	2 : 0.01	4 : 0.01	3 : 0.01	
c : 0.24	e : 0.12	d : 0.11	f : 0.09	] : 0.07	b : 0.07	g : 0.07	4 : 0.05	i : 0.03	= : 0.03	2 : 0.03	3 : 0.03	
d : 0.14	] : 0.12	f : 0.11	2 : 0.09	g : 0.09	c : 0.07	e : 0.07	i : 0.05	3 : 0.05	4 : 0.05	b : 0.05	= : 0.03	a : 0.01	
d : 0.16	] : 0.12	f : 0.11	g : 0.11	c : 0.09	2 : 0.07	e : 0.07	i : 0.05	= : 0.05	4 : 0.05	3 : 0.03	b : 0.03	
d : 0.16	e : 0.14	f : 0.11	c : 0.11	g : 0.11	i : 0.05	= : 0.05	b : 0.05	2 : 0.05	4 : 0.05	] : 0.03	3 : 0.01	: : 0.01	
d : 0.18	c : 0.14	e : 0.12	g : 0.12	i : 0.09	f : 0.07	2 : 0.07	= : 0.05	a : 0.03	] : 0.01	: : 0.01	3 : 0.01	b : 0.01	
d : 0.14	c : 0.12	e : 0.12	i : 0.09	] : 0.09	g : 0.07	f : 0.05	= : 0.05	5 : 0.03	2 : 0.03	b : 0.01	[ : 0.01	: : 0.01	n : 0.01	4 : 0.01	3 : 0.01	D : 0.01	0 : 0.01	

#score	781.019396113951
#seq	54
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_UTR_m3_run1.txt

#BEAR
[aeeeeecccooooooccc]eeeee]a	chr19:8070349-8070571(-)$1	222	177	204	13.9586
[dddd[acccooooooccc]a]ddddd	chr16:89627610-89627821(+)$1	211	111	138	13.8880
###a!!ddddoooooodddd22a4444	chr17:34044156-34044392(+)$1	236	38	65	14.7237
###cccddddoooooodddd]ccc444	chr17:5346760-5347042(-)$1	282	188	215	13.7550
cc[ccc[cccooooooccc]ccc]ccc	chr6:144416535-144416749(-)$1	214	75	102	14.5253
gggggg!!cccnnnnnccc333ggggg	chr14:75369586-75369839(+)$1	253	113	140	10.7735
gggggg!!cccnnnnnccc22gggggg	chr15:75212671-75212882(-)$1	211	181	208	10.1427
ii!!bb[cccooooooccc22bb22ii	chr9:101984729-101984975(+)$1	246	55	82	13.9751
==="""ddddoooooodddd=======	chr14:69341389-69341690(-)$1	301	204	231	14.5271
====="""cccnnnnnccc4444====	chr12:110764117-110764359(+)$1	242	165	192	11.0553
dd"""eeeeeooooooeeeeeddddFF	chr22:38208888-38209095(+)$1	207	146	173	11.9450
cc####ddddoooooodddd22ccc]b	chr17:75484707-75484923(+)$1	216	182	209	14.1961
dddd[ccc[aooooooa]ccc]dddd:	chr20:464098-464339(-)$1	241	118	145	11.8533
eeee"""cccooooooccc333eeeee	chr17:48459302-48459548(-)$1	246	89	116	15.0634
dddd[eeeeeooooooeeeee]ddddc	chr2:209119562-209119765(-)$1	203	5	32	12.2543
ccc!!bb[bboooooobbbb]ccc22e	chrX:152916268-152916527(+)$1	259	112	139	12.1301
gggggg!!bboooooobb22ggggggg	chr20:62119549-62119781(-)$1	232	145	172	12.7875
[a!!ffffffooooooffffff22aa]	chr12:50493703-50493938(+)$1	235	90	117	12.7278
fffff[bb[aooooooa]bb]ffffff	chr6:7288162-7288455(-)$1	293	236	263	11.3171
####a[ddddoooooodddd]a22ddd	chr2:96950075-96950305(-)$1	230	134	161	13.8050
hhbb[a[cccooooooccc]a]bb]hh	chr18:47919643-47919883(+)$1	240	179	206	13.1559
===bb[bb[aooooooabbbb]=====	chr15:52202641-52202875(+)$1	234	73	100	12.2563
============lll============	chr5:36953669-36953904(+)$1	235	132	159	10.1886
ffff!!ddddoooooodddd22fffff	chr14:24475380-24475595(+)$1	215	33	60	12.9671
c[ddddddddoooooodddd333dddd	chr1:6245351-6245576(-)$1	225	60	87	13.1975
eeccc!!cccooooooccc]ccc]eee	chr1:54293571-54293812(-)$1	241	31	58	14.4800
####ccccccooooooccc]ccc6666	chr10:102122359-102122579(+)$1	220	29	56	13.1143
ciiiiiiiiiooooooiiiiiiiii]c	chr16:23607434-23607721(-)$1	287	7	34	13.6170
a[bb"""cccooooooccc4444bb]a	chr4:77053644-77053874(-)$1	230	55	82	14.4146
fffff!!cccooooooccc22ffffff	chr20:54942764-54942995(+)$1	231	192	219	13.6371
[eeeeeddddoooooodddd22eeeee	chr2:105984004-105984247(-)$1	243	82	109	13.0677
ee"""eeeeeooooooeeeee333eee	chr7:27565815-27566092(-)$1	277	154	181	14.0192
ggg####cccooooooccc333ggggg	chr5:68473327-68473559(+)$1	232	136	163	15.7747
eeeee[ddddoooooodddd22eeeee	chr15:90762924-90763197(+)$1	273	62	89	13.0928
gggg[bbcccooooooccc]bb]gggg	chr22:20891378-20891592(+)$1	214	176	203	13.6260
ddddeeeeeaooooooa]eeeee333d	chr19:41135208-41135457(+)$1	249	72	99	12.5005
d!!a[eeeeeooooooeeeeea22ddd	chr15:79614331-79614585(+)$1	254	60	87	12.9994
cc"""eeeeeooooooeeeeeccc333	chr16:4487301-4487509(+)$1	208	177	204	13.7338
cc!!ffffffooooooffffff]ccc]	chr12:57649736-57649957(-)$1	221	44	71	12.7217
eccc[eeeeeooooooeeeee333ccc	chr1:114519332-114519585(+)$1	253	217	244	13.6063
eeeee!!cccooooooccc22eeeee:	chr14:31813114-31813358(-)$1	244	85	112	13.2821
==========oooooo==========:	chr19:34929471-34929684(+)$1	213	59	86	13.5976
[eeeee[cccooooooccc]eeeee]b	chr22:19838408-19838668(-)$1	260	23	50	13.9054
d[ccceeeeeooooooeeeee]ccc]d	chr19:2272681-2272916(+)$1	235	148	175	12.9947
####ccc[bboooooobbccc4444ff	chr12:122627033-122627250(+)$1	217	93	120	13.7460
f[dddd[cccoooooocccddddffff	chr19:46856903-46857254(+)$1	351	217	244	12.8569
e[eeeeecccooooooccc]eeeee]e	chr7:98985640-98985917(+)$1	277	217	244	13.9088
""ccc"""bboooooobbccc4444ff	chr15:57579712-57579979(+)$1	267	27	54	13.6630
$$$$$a[cccooooooccc]addddee	chr12:120638510-120638714(-)$1	204	108	135	13.8568
cc[a!!ddddoooooodddd22acccH	chr17:28618316-28618617(-)$1	301	1	28	13.5258
hh:gggggggoooooogggggggeeee	chr6:160206317-160206547(-)$1	230	184	211	11.7725
$$$$ffffffooooooffffff4444d	chr12:6645762-6645978(+)$1	216	109	136	12.4006
gg!!ffffffooooooffffff333gg	chr12:49716950-49717189(+)$1	239	17	44	13.4065
e"""ffffffooooooffffff333ee	chr7:4803411-4803638(+)$1	227	173	200	13.3357
&dddd!!cccooooooccc22dddddd	chr16:74656383-74656623(-)$1	240	158	185	13.0718
))ccc[ddddoooooodddd22ccc22	chr17:27187353-27187565(+)$1	212	85	112	12.4469
hha!!bb[bboooooobb333bb22a]	chr6:30692658-30692870(+)$1	212	48	75	12.2342
[ccc!!a[cccnnnnnccc]a22cccc	chr7:5567866-5568070(-)$1	204	141	168	10.4545
e####bb[bboooooobbbbeeeeebb	chr11:61568094-61568314(-)$1	220	88	115	11.6708
gggggg[cccoooooocccgggggggb	chr3:49055368-49055599(-)$1	231	103	130	14.1871

#otherMatches

#Seq PSSM
gcccgcccgcAUCCAGGUGAGGCGGUG	chr19:8070349-8070571(-)$1	222	177	204	13.9586
UCGGUACCACACGAAGGUGCGCGCCGG	chr16:89627610-89627821(+)$1	211	111	138	13.8880
UUUGAAUCUGUAUUUCUAGACACUGUU	chr17:34044156-34044392(+)$1	236	38	65	14.7237
UGUCUGUCUCCAAGCAGAGACCAGUAA	chr17:5346760-5347042(-)$1	282	188	215	13.7550
CUGCGUCCUCUGACCUGAGAGCGAAGG	chr6:144416535-144416749(-)$1	214	75	102	14.5253
GAGAGCCCAGGCCUGCCCUCACGCUCU	chr14:75369586-75369839(+)$1	253	113	140	10.7735
AUUUGAACAAGUUUUCCUUUAUUGAGU	chr15:75212671-75212882(-)$1	211	181	208	10.1427
GCCUGCCGCGCUCACCCGUCUGUCUGC	chr9:101984729-101984975(+)$1	246	55	82	13.9751
CUCCCAGCCUCCACCCGGGUGAGCUGG	chr14:69341389-69341690(-)$1	301	204	231	14.5271
AAGUACUUUAUGAAAUGUGUUUUUAUU	chr12:110764117-110764359(+)$1	242	165	192	11.0553
CUGUUAGGCUGAGGAAGGCUUGGGUGU	chr22:38208888-38209095(+)$1	207	146	173	11.9450
CAUCCCGGACACCCGCGUCCACUGCUG	chr17:75484707-75484923(+)$1	216	182	209	14.1961
ACCGUCCCACACUUUAGGGGGUUGGUA	chr20:464098-464339(-)$1	241	118	145	11.8533
AAUUUUAGAGCAUUAACUCCCUAAUUG	chr17:48459302-48459548(-)$1	246	89	116	15.0634
CUGGGAGUCCGGUUUGGGAUUGCCAGG	chr2:209119562-209119765(-)$1	203	5	32	12.2543
CCAAACUACCGCCGGAGGAGAUGGGGU	chrX:152916268-152916527(+)$1	259	112	139	12.1301
cggcgcgacccuccccggcggugccgc	chr20:62119549-62119781(-)$1	232	145	172	12.7875
CGCUGAGUUGGGUUUGUGACUCUUCCC	chr12:50493703-50493938(+)$1	235	90	117	12.7278
ucugaaguucaaauuagugccucggaa	chr6:7288162-7288455(-)$1	293	236	263	11.3171
GAAGCAGCGCAAGAACGUGCAGAACAU	chr2:96950075-96950305(-)$1	230	134	161	13.8050
CUUCCUGGAAGCUGGAUUUGGAGACAG	chr18:47919643-47919883(+)$1	240	179	206	13.1559
gugagcugagaucguaccacugcacug	chr15:52202641-52202875(+)$1	234	73	100	12.2563
AAUGGGGAUAUGCCCCAUGUCCCCAUU	chr5:36953669-36953904(+)$1	235	132	159	10.1886
GCCUCCCCUGAGAACACAGGACAGGCC	chr14:24475380-24475595(+)$1	215	33	60	12.9671
GGCUUUGCAAUUUCACUUGUGUUAAAG	chr1:6245351-6245576(-)$1	225	60	87	13.1975
AUGCACUCAUUUAUUCAUGCUGCAAUG	chr1:54293571-54293812(-)$1	241	31	58	14.4800
UGCUCAGGGUCACUGAACCACUGCUUC	chr10:102122359-102122579(+)$1	220	29	56	13.1143
CCGGCGGUGCCCGACAGCGCUGCCGUG	chr16:23607434-23607721(-)$1	287	7	34	13.6170
GAGUUCCAGCUACAACGCUAUAUGCCC	chr4:77053644-77053874(-)$1	230	55	82	14.4146
ACAAGGCUAAAUAAAAUUACAUUUGUG	chr20:54942764-54942995(+)$1	231	192	219	13.6371
CUGGCAUGAGACCUGCUUCAUCUGCCA	chr2:105984004-105984247(-)$1	243	82	109	13.0677
UGGCAGUCUGGCCCAUCAGAUCUACAG	chr7:27565815-27566092(-)$1	277	154	181	14.0192
AAACUUGAGUUGGAGUACUAUAUUUAC	chr5:68473327-68473559(+)$1	232	136	163	15.7747
GGGCGUGGGACUGAUAUCCCCUCGCUC	chr15:90762924-90763197(+)$1	273	62	89	13.0928
CUGGAACCCCUCUGUUGGGUGUCCUAG	chr22:20891378-20891592(+)$1	214	176	203	13.6260
UCGUUGUCUCCCCUCCGCAGACAUCAA	chr19:41135208-41135457(+)$1	249	72	99	12.5005
CGGGAGGCCCAGGACCGGGCCCGAGCA	chr15:79614331-79614585(+)$1	254	60	87	12.9994
CCUAUGAGGUAAUAUGACUUCGGUGCA	chr16:4487301-4487509(+)$1	208	177	204	13.7338
UGCAAGGCAGUCAAUGUUGUUUACAUG	chr12:57649736-57649957(-)$1	221	44	71	12.7217
CUCCAGAGUUUUUAAUAGCUCCCAGGA	chr1:114519332-114519585(+)$1	253	217	244	13.6063
AGGUAACAGUACUUCAAUUUCUACCUU	chr14:31813114-31813358(-)$1	244	85	112	13.2821
UCAUAUCCUGACUUCAUAGGGUGUGAC	chr19:34929471-34929684(+)$1	213	59	86	13.5976
CCUGUGUGGCUUGAGCGCCCCAUAGUC	chr22:19838408-19838668(-)$1	260	23	50	13.9054
CGUAUCGCCUGCAGUAGGGUGCGUGGG	chr19:2272681-2272916(+)$1	235	148	175	12.9947
UUCUCGGAUGUCACCUCACCGCUGUGG	chr12:122627033-122627250(+)$1	217	93	120	13.7460
UACGCGCUGGGAGACGCCACGCGGGCC	chr19:46856903-46857254(+)$1	351	217	244	12.8569
CUGUUAUUUCGAGCAGGAGAAUGACUG	chr7:98985640-98985917(+)$1	277	217	244	13.9088
AAUCACUUUGAACUUCCAUGAAACCUG	chr15:57579712-57579979(+)$1	267	27	54	13.6630
AUCCCUGACGCACCGCCGUGAUGCCCA	chr12:120638510-120638714(-)$1	204	108	135	13.8568
CGCUUACGAAGUUAGAUUCGGGACGCG	chr17:28618316-28618617(-)$1	301	1	28	13.5258
GAUgggcauggugguaugugccuguag	chr6:160206317-160206547(-)$1	230	184	211	11.7725
CCACCCAUGGCAAAUUCCAUGGCACCG	chr12:6645762-6645978(+)$1	216	109	136	12.4006
CGGAUUGGACGGCUGAGUCUGGCUACG	chr12:49716950-49717189(+)$1	239	17	44	13.4065
AGCAGUGGUUCUUGGAAAUCGCCCGUC	chr7:4803411-4803638(+)$1	227	173	200	13.3357
AGGGGUUGUUGCACUAGAUUUCCCCAG	chr16:74656383-74656623(-)$1	240	158	185	13.0718
AUACCCUCAGAAACUCCUGAUUGGUCC	chr17:27187353-27187565(+)$1	212	85	112	12.4469
GUGUCAGCAGUAUUAUCUCCACUUUCA	chr6:30692658-30692870(+)$1	212	48	75	12.2342
UCCAGCCUUCCUUCCUGGGUGAGUGGA	chr7:5567866-5568070(-)$1	204	141	168	10.4545
UCUUCAGCAGCAUCUACUCUAGGCAUA	chr11:61568094-61568314(-)$1	220	88	115	11.6708
CUCGUGGCCGAUCACCUGGCGCGAGCC	chr3:49055368-49055599(-)$1	231	103	130	14.1871

#DB
.(((((((((......))).))))).)	chr19:8070349-8070571(-)$1	1	177	204	13.9586
.((((.((((......))).).)))))	chr16:89627610-89627821(+)$1	1	111	138	13.8880
...(..((((......))))..)....	chr17:34044156-34044392(+)$1	1	38	65	14.7237
...(((((((......)))).)))...	chr17:5346760-5347042(-)$1	1	188	215	13.7550
((.(((.(((......))).))).)))	chr6:144416535-144416749(-)$1	1	75	102	14.5253
((((((..(((.....)))...)))))	chr14:75369586-75369839(+)$1	1	113	140	10.7735
((((((..(((.....)))..))))))	chr15:75212671-75212882(-)$1	1	181	208	10.1427
((..((.(((......)))..))..))	chr9:101984729-101984975(+)$1	1	55	82	13.9751
(((...((((......)))))))))))	chr14:69341389-69341690(-)$1	1	204	231	14.5271
(((((...(((.....)))....))))	chr12:110764117-110764359(+)$1	1	165	192	11.0553
((...(((((......)))))))))))	chr22:38208888-38209095(+)$1	1	146	173	11.9450
((....((((......))))..))).)	chr17:75484707-75484923(+)$1	1	182	209	14.1961
((((.(((.(......).))).)))).	chr20:464098-464339(-)$1	1	118	145	11.8533
((((...(((......)))...)))))	chr17:48459302-48459548(-)$1	1	89	116	15.0634
((((.(((((......))))).)))))	chr2:209119562-209119765(-)$1	1	5	32	12.2543
(((..((.((......)))).)))..)	chrX:152916268-152916527(+)$1	1	112	139	12.1301
((((((..((......))..)))))))	chr20:62119549-62119781(-)$1	1	145	172	12.7875
.(..((((((......))))))..)).	chr12:50493703-50493938(+)$1	1	90	117	12.7278
(((((.((.(......).)).))))))	chr6:7288162-7288455(-)$1	1	236	263	11.3171
....(.((((......)))).)..)))	chr2:96950075-96950305(-)$1	1	134	161	13.8050
((((.(.(((......))).).)).))	chr18:47919643-47919883(+)$1	1	179	206	13.1559
(((((.((.(......))))).)))))	chr15:52202641-52202875(+)$1	1	73	100	12.2563
((((((((((((...))))))))))))	chr5:36953669-36953904(+)$1	1	132	159	10.1886
((((..((((......))))..)))))	chr14:24475380-24475595(+)$1	1	33	60	12.9671
(.((((((((......))))...))))	chr1:6245351-6245576(-)$1	1	60	87	13.1975
(((((..(((......))).))).)))	chr1:54293571-54293812(-)$1	1	31	58	14.4800
....((((((......))).)))....	chr10:102122359-102122579(+)$1	1	29	56	13.1143
((((((((((......))))))))).)	chr16:23607434-23607721(-)$1	1	7	34	13.6170
(.((...(((......)))....)).)	chr4:77053644-77053874(-)$1	1	55	82	14.4146
(((((..(((......)))..))))))	chr20:54942764-54942995(+)$1	1	192	219	13.6371
.(((((((((......))))..)))))	chr2:105984004-105984247(-)$1	1	82	109	13.0677
((...(((((......)))))...)))	chr7:27565815-27566092(-)$1	1	154	181	14.0192
(((....(((......)))...)))))	chr5:68473327-68473559(+)$1	1	136	163	15.7747
(((((.((((......))))..)))))	chr15:90762924-90763197(+)$1	1	62	89	13.0928
((((.(((((......))).)).))))	chr22:20891378-20891592(+)$1	1	176	203	13.6260
((((((((((......).)))))...)	chr19:41135208-41135457(+)$1	1	72	99	12.5005
(..(.(((((......))))))..)))	chr15:79614331-79614585(+)$1	1	60	87	12.9994
((...(((((......))))))))...	chr16:4487301-4487509(+)$1	1	177	204	13.7338
((..((((((......)))))).))).	chr12:57649736-57649957(-)$1	1	44	71	12.7217
((((.(((((......)))))...)))	chr1:114519332-114519585(+)$1	1	217	244	13.6063
(((((..(((......)))..))))).	chr14:31813114-31813358(-)$1	1	85	112	13.2821
((((((((((......)))))))))).	chr19:34929471-34929684(+)$1	1	59	86	13.5976
.(((((.(((......))).))))).)	chr22:19838408-19838668(-)$1	1	23	50	13.9054
(.((((((((......))))).))).)	chr19:2272681-2272916(+)$1	1	148	175	12.9947
....(((.((......)))))....))	chr12:122627033-122627250(+)$1	1	93	120	13.7460
(.((((.(((......)))))))))))	chr19:46856903-46857254(+)$1	1	217	244	12.8569
(.((((((((......))).))))).)	chr7:98985640-98985917(+)$1	1	217	244	13.9088
..(((...((......)))))....))	chr15:57579712-57579979(+)$1	1	27	54	13.6630
.....(.(((......))).)))))))	chr12:120638510-120638714(-)$1	1	108	135	13.8568
((.(..((((......))))..))))(	chr17:28618316-28618617(-)$1	1	1	28	13.5258
)).(((((((......)))))))((((	chr6:160206317-160206547(-)$1	1	184	211	11.7725
....((((((......))))))....)	chr12:6645762-6645978(+)$1	1	109	136	12.4006
((..((((((......))))))...))	chr12:49716950-49717189(+)$1	1	17	44	13.4065
(...((((((......))))))...))	chr7:4803411-4803638(+)$1	1	173	200	13.3357
.((((..(((......)))..))))))	chr16:74656383-74656623(-)$1	1	158	185	13.0718
..(((.((((......))))..)))..	chr17:27187353-27187565(+)$1	1	85	112	12.4469
(((..((.((......))...))..).	chr6:30692658-30692870(+)$1	1	48	75	12.2342
.(((..(.(((.....))).)..))))	chr7:5567866-5568070(-)$1	1	141	168	10.4545
(....((.((......)))))))))))	chr11:61568094-61568314(-)$1	1	88	115	11.6708
((((((.(((......)))))))))))	chr3:49055368-49055599(-)$1	1	103	130	14.1871

#PSSM
e : 0.15	c : 0.13	g : 0.11	[ : 0.09	d : 0.09	# : 0.08	= : 0.08	f : 0.06	h : 0.05	$ : 0.03	i : 0.01	a : 0.01	" : 0.01	& : 0.01	) : 0.01	
c : 0.13	g : 0.11	e : 0.11	d : 0.09	# : 0.09	= : 0.08	[ : 0.08	f : 0.05	h : 0.05	a : 0.03	i : 0.03	" : 0.03	$ : 0.03	! : 0.01	) : 0.01	
e : 0.11	d : 0.11	# : 0.11	c : 0.11	g : 0.09	! : 0.08	= : 0.08	" : 0.06	f : 0.05	[ : 0.03	b : 0.03	$ : 0.03	i : 0.01	: : 0.01	a : 0.01	
c : 0.13	e : 0.11	d : 0.11	g : 0.09	! : 0.09	# : 0.09	" : 0.08	a : 0.05	= : 0.05	f : 0.05	b : 0.05	$ : 0.03	i : 0.01	
c : 0.13	e : 0.11	f : 0.11	! : 0.09	" : 0.09	[ : 0.09	g : 0.08	d : 0.06	= : 0.05	# : 0.05	b : 0.03	a : 0.01	i : 0.01	$ : 0.01	
e : 0.19	! : 0.13	[ : 0.09	c : 0.08	g : 0.08	b : 0.08	" : 0.08	f : 0.08	# : 0.03	a : 0.03	= : 0.03	d : 0.03	i : 0.01	
d : 0.18	e : 0.16	[ : 0.11	! : 0.11	b : 0.09	f : 0.08	" : 0.06	c : 0.05	a : 0.03	= : 0.03	i : 0.01	# : 0.01	g : 0.01	
c : 0.33	d : 0.18	e : 0.13	[ : 0.08	f : 0.08	! : 0.05	" : 0.03	b : 0.03	= : 0.03	i : 0.01	g : 0.01	
c : 0.38	d : 0.18	e : 0.13	b : 0.09	f : 0.08	[ : 0.05	= : 0.03	i : 0.01	g : 0.01	
c : 0.38	d : 0.18	e : 0.11	b : 0.09	f : 0.08	a : 0.06	= : 0.03	i : 0.01	g : 0.01	
o : 0.91	c : 0.06	= : 0.01	
o : 0.91	n : 0.06	= : 0.01	
o : 0.91	n : 0.06	l : 0.01	
o : 0.91	n : 0.06	l : 0.01	
o : 0.91	n : 0.06	l : 0.01	
o : 0.91	n : 0.06	= : 0.01	
c : 0.38	d : 0.18	e : 0.11	b : 0.09	f : 0.08	a : 0.06	= : 0.03	i : 0.01	g : 0.01	
c : 0.38	d : 0.18	e : 0.11	b : 0.11	f : 0.08	] : 0.05	= : 0.03	i : 0.01	g : 0.01	
c : 0.43	d : 0.18	e : 0.13	f : 0.08	b : 0.06	= : 0.03	2 : 0.01	i : 0.01	g : 0.01	3 : 0.01	
d : 0.19	] : 0.18	e : 0.13	2 : 0.09	f : 0.08	3 : 0.06	b : 0.06	c : 0.05	4 : 0.03	= : 0.03	g : 0.03	i : 0.01	
e : 0.19	2 : 0.19	c : 0.09	3 : 0.08	f : 0.08	a : 0.06	] : 0.06	= : 0.05	g : 0.05	4 : 0.03	b : 0.03	i : 0.01	d : 0.01	
2 : 0.13	f : 0.11	e : 0.09	] : 0.09	c : 0.09	3 : 0.09	g : 0.06	4 : 0.06	d : 0.06	b : 0.05	= : 0.05	a : 0.03	i : 0.01	
e : 0.15	c : 0.15	d : 0.11	g : 0.09	4 : 0.08	3 : 0.08	= : 0.06	2 : 0.06	b : 0.05	f : 0.05	a : 0.03	] : 0.03	i : 0.01	
e : 0.15	c : 0.15	d : 0.11	g : 0.09	2 : 0.08	= : 0.08	3 : 0.08	4 : 0.06	f : 0.06	] : 0.03	b : 0.03	6 : 0.01	i : 0.01	
e : 0.18	d : 0.15	c : 0.13	g : 0.09	4 : 0.08	= : 0.08	f : 0.06	3 : 0.06	2 : 0.05	a : 0.01	] : 0.01	6 : 0.01	i : 0.01	b : 0.01	
e : 0.15	] : 0.11	d : 0.11	g : 0.11	f : 0.09	c : 0.08	= : 0.08	4 : 0.05	2 : 0.03	a : 0.03	3 : 0.03	i : 0.01	F : 0.01	h : 0.01	6 : 0.01	b : 0.01	
e : 0.16	d : 0.13	g : 0.09	f : 0.09	c : 0.08	= : 0.06	b : 0.06	: : 0.05	] : 0.05	a : 0.03	4 : 0.03	i : 0.01	F : 0.01	h : 0.01	6 : 0.01	3 : 0.01	H : 0.01	2 : 0.01	

#score	785.894937644964
#seq	60
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_CDS_m2_run2.txt

#BEAR
bbccc[ccc[ddddooooooddddccc22ccc]	chr17:39846976-39847280(+)$1	304	140	173	11.3390
bb!!ggggggg[cccnnnnncccggggggg22b	chrX:64754349-64754699(-)$1	350	65	98	13.7029
e####ccc####cccooooooccc22ccc22ee	chr18:47017086-47017309(-)$1	223	21	54	11.9352
ee!!dddd!!eeeeennnnneeeeeddddeeee	chr12:98995189-98995463(+)$1	274	123	156	13.3513
"eeeee####a[cccnnnnnccc]a4444eeee	chr6:158994393-158994659(+)$1	266	77	110	15.0387
###bb[dddd[ddddnnnnndddd]dddd22bb	chr6:160200855-160201119(-)$1	264	130	163	13.4735
f[bb!!ccc[acccooooooccc]a]ccc4444	chr6:26204758-26205026(+)$1	268	12	45	11.4909
c####ffffffddddnnnnndddd]ffffff]c	chr6:26285562-26285856(-)$1	294	230	263	14.0619
H::dddd####ddddnnnnndddd22ddddddd	chr12:120593014-120593276(-)$1	262	214	247	12.6621
eeeee!!eeeee[bbnnnnnbbeeeee]eeeee	chr11:64084212-64084438(-)$1	226	97	130	12.2271
"dddd[a"""eeeeennnnneeeeea]dddd22	chr4:109543595-109543823(+)$1	228	131	164	14.1321
iiiiiiccc"""cccooooooccc333ccc>>>	chr6:170844123-170844436(-)$1	313	176	209	12.0482
##bb"""ccc[cccnnnnncccccc]bb4444c	chr3:49052847-49053172(+)$1	325	13	46	12.1130
####===========nnnnn===========cc	chr17:41154787-41155038(+)$1	251	28	61	15.1584
!ffffff####ddddnnnnndddd22ffffff2	chr8:97243104-97243391(-)$1	287	42	75	15.0749
ffff"""a[ffffffnnnnnffffff]a22fff	chr12:131360366-131360662(+)$1	296	159	192	12.0394
ggg[ccc!!ddddbbnnnnnbb]dddd22ccc]	chr6:160199915-160200211(-)$1	296	181	214	13.2323
""ddddeeeee[cccnnnnnccceeeee333dd	chr16:89167401-89167659(+)$1	258	83	116	13.8342
ebba[ffffffddddnnnnndddd22ffffff]	chr2:55461228-55461440(+)$1	212	47	80	13.8099
eeee[ffffff!!bbnnnnnbb4444ffffff]	chr4:109546183-109546442(+)$1	259	210	243	12.4415
###dddd[a[eeeeennnnneeeee]adddd44	chr6:26204943-26205147(+)$1	204	127	160	14.5945
:ccc[dddd[eeeeennnnneeeee22ddddcc	chr7:135333155-135333470(+)$1	315	79	112	12.9560
GGccceeeee[ddddnnnnnddddeeeee22cc	chr3:101404610-101404863(-)$1	253	53	86	13.1513
g[ccc!!bb!!ddddnnnnnddddbb22cccgg	chr6:27775855-27776111(+)$1	256	166	199	14.9701
hhhhhhhhccc[cccnnnnnccc]ccc22hhhh	chr1:6012658-6012940(-)$1	282	153	186	12.0924
""ggggggg!!ddddnnnnndddd22ggggggg	chr7:30668086-30668328(+)$1	242	193	226	16.4718
hhhhh####ffffffnnnnnffffff4444hhh	chrX:118604909-118605165(+)$1	256	203	236	11.8135
hhhhhhh$$$$$cccnnnnnccc22hhhhhhhh	chr20:62421330-62421600(-)$1	270	119	152	11.7219
Fccc!!bb!!cccbbnnnnnbb]ccc22bb]cc	chrX:129263294-129263647(-)$1	353	55	88	12.6154
dd[ccc[bb[eeeeennnnneeeeebbccc]dd	chr7:54825163-54825388(-)$1	225	134	167	13.0790
e####ccca[ccc[annnnna]ccc]a]cccee	chr3:9876794-9877060(+)$1	266	124	157	14.6290
((eeeee####ddddnnnnndddd]eeeee===	chr14:35761566-35761832(+)$1	266	88	121	14.0984
iiiiiiiii"""cccmmmmccc333iiiiiiii	chr2:168726232-168726500(-)$1	268	13	46	10.0771
fffff[ccc!!ddddnnnnndddd22ccc]fff	chr22:42204801-42205085(+)$1	284	83	116	15.3509
c[dddd[bb[eeeeennnnneeeee22bb]ddd	chr9:127115691-127115981(-)$1	290	101	134	13.0256
ggggggga"""bb[annnnna]bb333a]gggg	chr11:62292786-62293070(-)$1	284	53	86	14.6090
""=============nnnnn=============	chr1:174979110-174979362(+)$1	252	144	177	15.2678
FFFFFF:ccc[ddddnnnnndddd22ccciiii	chr6:35438255-35438486(+)$1	231	2	35	11.6321
dddd[a"""ffffffnnnnnffffff]a]dddd	chr1:93301733-93301973(+)$1	240	69	102	12.0646
b[ccc[a"""ddddoooooodddd]acccbb33	chr16:1496193-1496476(-)$1	283	79	112	12.0599
c!!ffffff!!ddddoooooodddd]ffffff4	chr2:10580663-10580955(-)$1	292	243	276	11.1452
cc[eeeee[a[ddddnnnnndddd]a]eeeeec	chr8:101727690-101727927(-)$1	237	167	200	14.7779
eeee[dddd!!ddddnnnnndddd4444dddd]	chr10:32197231-32197504(-)$1	273	190	223	15.0567
bbccc[ccc[ddddooooooddddccc22ccc]	chr17:39847080-39847347(+)$1	267	36	69	11.3390
###ccc####eeeeennnnneeeee333ccc66	chr11:32610055-32610302(+)$1	247	139	172	15.2682
ggggggg$$$$$cccnnnnnccc333ggggggg	chr6:75949929-75950200(-)$1	271	2	35	15.2755
ggggg[eeeee[cccnnnnnccceeeee333gg	chr19:17212603-17212933(+)$1	330	175	208	14.5591
###dddd[a[eeeeennnnneeeee]adddd44	chr6:26204879-26205142(+)$1	263	191	224	14.5945
gggg"""eeeee[bbnnnnnbbeeeeegggggg	chr1:182856458-182856797(+)$1	339	150	183	13.1820
"""a[eeeee[ddddnnnnnddddeeeeea333	chr16:67263355-67263651(-)$1	296	173	206	15.1985
ehhhhhhhh[cccbbnnnnnbb333ccchhhhh	chr16:723789-724053(+)$1	264	31	64	11.7022
ea[ffffff"""cccnnnnnccc666666ffff	chr16:68156102-68156408(+)$1	306	169	202	11.8245

#otherMatches

#Seq PSSM
UGCAAUGAGUAGAAUUUCCCUUCUCUCCCUUGU	chr17:39846976-39847280(+)$1	304	140	173	11.3390
GCGGAGCGGCGCGGCACAGAGCCUGUUGUUGAG	chrX:64754349-64754699(-)$1	350	65	98	13.7029
GAAACUGCUCAGGCCAUCAAGGGUAUGCAUAUA	chr18:47017086-47017309(-)$1	223	21	54	11.9352
CAAAGCAAAUGUGGACUGAAUCUGCUUGUUGAU	chr12:98995189-98995463(+)$1	274	123	156	13.3513
UACACGCUCUCCAAGCGCCACUUUGUCCUCGUG	chr6:158994393-158994659(+)$1	266	77	110	15.0387
CCCGGUGGGGGUGCUGUAGAAGCAGCCCUUUCC	chr6:160200855-160201119(-)$1	264	130	163	13.4735
CGCGUUUUCAGUCUUCAUUUAGGUCCGAAUUCC	chr6:26204758-26205026(+)$1	268	12	45	11.4909
UAUCCGGCGCCUUGCUCGUCGCGGCGGUGUCAA	chr6:26285562-26285856(-)$1	294	230	263	14.0619
UACCAGGAAAAGCUCUACGUGAGUGACCUGUGC	chr12:120593014-120593276(-)$1	262	214	247	12.6621
GAGAGUUGAUUGUGCCAGGCGCCAGUUUUUCUU	chr11:64084212-64084438(-)$1	226	97	130	12.2271
CAGCAGGGCCUAUGGUGGUUCCAUGUGUGCUAA	chr4:109543595-109543823(+)$1	228	131	164	14.1321
CUUUGGAACUGUACCUUGGAUGGUUUUGUUUAU	chr6:170844123-170844436(-)$1	313	176	209	12.0482
AGCUGAAGGUGAGUGGAGUGCUGCCAAGAAUAU	chr3:49052847-49053172(+)$1	325	13	46	12.1130
UAGUGAAUGGUGGAGUAUGGUUUCACUAUUUCC	chr17:41154787-41155038(+)$1	251	28	61	15.1584
CCUUGAACCGUAUCUGAAAGAGGUUAUUCGGGA	chr8:97243104-97243391(-)$1	287	42	75	15.0749
GAUGUCAGCGGUGCAGCGUGUGUGCCACCUCAU	chr12:131360366-131360662(+)$1	296	159	192	12.0394
UACCUUGAGUUGAGUAUUACACAUUAAAGUAAA	chr6:160199915-160200211(-)$1	296	181	214	13.2323
CCAGCUGGAGUAUGUCAUCUGCGACUCCCAGAG	chr16:89167401-89167659(+)$1	258	83	116	13.8342
GACUGAUCUUUGCUGGCAAGCAGCUGGAAGAUG	chr2:55461228-55461440(+)$1	212	47	80	13.8099
AAAAUGAAAAGACGCUGUAUGUAUGACUUUUUU	chr4:109546183-109546442(+)$1	259	210	243	12.4415
AUUCGUGAUGCUGUGACUUACACGGAGCACGCC	chr6:26204943-26205147(+)$1	204	127	160	14.5945
AUCUCGAUAUAGUUUCAUACAGGCUCUUGUCAG	chr7:135333155-135333470(+)$1	315	79	112	12.9560
AUAGUUAAAUAGUAAUUCCUUUGCAUUUGUCAC	chr3:101404610-101404863(-)$1	253	53	86	13.1513
GCGCCAAGGCCAAGACCCGCUCUUCUCGGGCCG	chr6:27775855-27776111(+)$1	256	166	199	14.9701
GCUCCACGUCCAGGACCACUUCCAGGAGGUGUG	chr1:6012658-6012940(-)$1	282	153	186	12.0924
AGAACAGUAAGUUGUUGUGUACAGUGUGCUGUU	chr7:30668086-30668328(+)$1	242	193	226	16.4718
UCUCAGUGGCAACUAUUUACUGGUUGAAAAUGG	chrX:118604909-118605165(+)$1	256	203	236	11.8135
UGUUUCUUCACAGCCUCUAUGGCCUGGAGACGU	chr20:62421330-62421600(-)$1	270	119	152	11.7219
CGGUGAGCAGCAUGAAGAUCUCAAUGAAGUAGC	chrX:129263294-129263647(-)$1	353	55	88	12.6154
CCAAGUCGGCAGUUUGUAAAGGACUCCAUUCGG	chr7:54825163-54825388(-)$1	225	134	167	13.0790
GCUGAGGCCUGCCCCAUGAAGAGGCUGAGCCCC	chr3:9876794-9877060(+)$1	266	124	157	14.6290
UUGUGUUUAAAGUAGUGCUUCUACCAACAUGUC	chr14:35761566-35761832(+)$1	266	88	121	14.0984
CUGUGCAUUUCUUCUGGAGAGAUCUGAUGCACA	chr2:168726232-168726500(-)$1	268	13	46	10.0771
AGGUUUGGAUAUGGACCUUCUUCAAUUCCUGGC	chr22:42204801-42205085(+)$1	284	83	116	15.3509
CUGAAUGGCAUCAGUGGGUGGCUGGCCGCGGUU	chr9:127115691-127115981(-)$1	290	101	134	13.0256
AUCAAAGCCCCCAAGAUCCCCAUGCCUGACUUU	chr11:62292786-62293070(-)$1	284	53	86	14.6090
AAUACUGAUGUUUCCAGUAAGGGAAUAUUGGUG	chr1:174979110-174979362(+)$1	252	144	177	15.2678
GGGUCCAAGUACCUGCUCACCAGGCCACUGGGG	chr6:35438255-35438486(+)$1	231	2	35	11.6321
UGAUGAAUACAAUGUGGAAAGCAUUGAUGGUCA	chr1:93301733-93301973(+)$1	240	69	102	12.0646
CUCCUCGUCUAGGUUUCUUUACCUCCAGGGAUC	chr16:1496193-1496476(-)$1	283	79	112	12.0599
GGAUAUGGGUCACACUUAUCUGUGUUCCUAUGG	chr2:10580663-10580955(-)$1	292	243	276	11.1452
CAAUGUUUACAUCAAGAAUUUUGGAGAAGACAU	chr8:101727690-101727927(-)$1	237	167	200	14.7779
GAAAGUUUAACAAUGACUCACAUUCUCCUAAAG	chr10:32197231-32197504(-)$1	273	190	223	15.0567
UGCAAUGAGUAGAAUUUCCCUUCUCUCCCUUGU	chr17:39847080-39847347(+)$1	267	36	69	11.3390
CAAGCAAGAAGCUUUGAUUGAAAGCCUAUGUGA	chr11:32610055-32610302(+)$1	247	139	172	15.2682
AAGGAGCUAUAUCAUUUUAUAUGCCUGUUCUUU	chr6:75949929-75950200(-)$1	271	2	35	15.2755
UGUGCACCGGGUGCUGCUAUGGCCCCGGCGGGC	chr19:17212603-17212933(+)$1	330	175	208	14.5591
AUUCGUGAUGCUGUGACUUACACGGAGCACGCC	chr6:26204879-26205142(+)$1	263	191	224	14.5945
AAAAAAGGCAUGCUAUGUGUUACGUGUUUUUUC	chr1:182856458-182856797(+)$1	339	150	183	13.1820
GAGGAGGGCCCAGAGCAGAAUUCUGGCCCCAGA	chr16:67263355-67263651(-)$1	296	173	206	15.1985
AGGUGGCUGAGCAGGAGCUCCCAAGUGCCGGCC	chr16:723789-724053(+)$1	264	31	64	11.7022
UAGUCCUAGUCCUGCCAGCAGCAUCUCUUCUAG	chr16:68156102-68156408(+)$1	306	169	202	11.8245

#DB
(((((.(((.((((......)))))))..))).	chr17:39846976-39847280(+)$1	1	140	173	11.3390
((..(((((((.(((.....))))))))))..)	chrX:64754349-64754699(-)$1	1	65	98	13.7029
(....(((....(((......)))..)))..))	chr18:47017086-47017309(-)$1	1	21	54	11.9352
((..((((..(((((.....)))))))))))))	chr12:98995189-98995463(+)$1	1	123	156	13.3513
.(((((....(.(((.....))).)....))))	chr6:158994393-158994659(+)$1	1	77	110	15.0387
...((.((((.((((.....)))).))))..))	chr6:160200855-160201119(-)$1	1	130	163	13.4735
(.((..(((.((((......))).).)))....	chr6:26204758-26205026(+)$1	1	12	45	11.4909
(....((((((((((.....)))).)))))).)	chr6:26285562-26285856(-)$1	1	230	263	14.0619
)..((((....((((.....))))..))))(((	chr12:120593014-120593276(-)$1	1	214	247	12.6621
(((((..(((((.((.....))))))).)))))	chr11:64084212-64084438(-)$1	1	97	130	12.2271
.((((.(...(((((.....)))))).))))..	chr4:109543595-109543823(+)$1	1	131	164	14.1321
(((((((((...(((......)))...)))...	chr6:170844123-170844436(-)$1	1	176	209	12.0482
..((...(((.(((.....)))))).))....)	chr3:49052847-49053172(+)$1	1	13	46	12.1130
....(((((((((((.....)))))))))))))	chr17:41154787-41155038(+)$1	1	28	61	15.1584
.((((((....((((.....))))..)))))).	chr8:97243104-97243391(-)$1	1	42	75	15.0749
((((...(.((((((.....)))))).)..)))	chr12:131360366-131360662(+)$1	1	159	192	12.0394
(((.(((..((((((.....)).))))..))).	chr6:160199915-160200211(-)$1	1	181	214	13.2323
..(((((((((.(((.....))))))))...))	chr16:89167401-89167659(+)$1	1	83	116	13.8342
((((.((((((((((.....))))..)))))).	chr2:55461228-55461440(+)$1	1	47	80	13.8099
((((.((((((..((.....))....)))))).	chr4:109546183-109546442(+)$1	1	210	243	12.4415
...((((.(.(((((.....))))).)))))..	chr6:26204943-26205147(+)$1	1	127	160	14.5945
.(((.((((.(((((.....)))))..))))))	chr7:135333155-135333470(+)$1	1	79	112	12.9560
((((((((((.((((.....)))))))))..))	chr3:101404610-101404863(-)$1	1	53	86	13.1513
(.(((..((..((((.....))))))..)))))	chr6:27775855-27776111(+)$1	1	166	199	14.9701
(((((((((((.(((.....))).)))..))))	chr1:6012658-6012940(-)$1	1	153	186	12.0924
..(((((((..((((.....))))..)))))))	chr7:30668086-30668328(+)$1	1	193	226	16.4718
(((((....((((((.....))))))....)))	chrX:118604909-118605165(+)$1	1	203	236	11.8135
(((((((.....(((.....)))..))))))))	chr20:62421330-62421600(-)$1	1	119	152	11.7219
((((..((..(((((.....)).)))..)).))	chrX:129263294-129263647(-)$1	1	55	88	12.6154
((.(((.((.(((((.....)))))))))).))	chr7:54825163-54825388(-)$1	1	134	167	13.0790
(....((((.(((.(.....).))).).)))))	chr3:9876794-9877060(+)$1	1	124	157	14.6290
..(((((....((((.....)))).))))))))	chr14:35761566-35761832(+)$1	1	88	121	14.0984
(((((((((...(((....)))...))))))))	chr2:168726232-168726500(-)$1	1	13	46	10.0771
(((((.(((..((((.....))))..))).)))	chr22:42204801-42205085(+)$1	1	83	116	15.3509
(.((((.((.(((((.....)))))..)).)))	chr9:127115691-127115981(-)$1	1	101	134	13.0256
((((((((...((.(.....).))...).))))	chr11:62292786-62293070(-)$1	1	53	86	14.6090
..(((((((((((((.....)))))))))))))	chr1:174979110-174979362(+)$1	1	144	177	15.2678
((((((.(((.((((.....))))..)))((((	chr6:35438255-35438486(+)$1	1	2	35	11.6321
((((.(...((((((.....)))))).).))))	chr1:93301733-93301973(+)$1	1	69	102	12.0646
(.(((.(...((((......)))).))))))..	chr16:1496193-1496476(-)$1	1	79	112	12.0599
(..((((((..((((......)))).)))))).	chr2:10580663-10580955(-)$1	1	243	276	11.1452
((.(((((.(.((((.....)))).).))))))	chr8:101727690-101727927(-)$1	1	167	200	14.7779
((((.((((..((((.....))))....)))).	chr10:32197231-32197504(-)$1	1	190	223	15.0567
(((((.(((.((((......)))))))..))).	chr17:39847080-39847347(+)$1	1	36	69	11.3390
...(((....(((((.....)))))...)))..	chr11:32610055-32610302(+)$1	1	139	172	15.2682
(((((((.....(((.....)))...)))))))	chr6:75949929-75950200(-)$1	1	2	35	15.2755
(((((.(((((.(((.....))))))))...))	chr19:17212603-17212933(+)$1	1	175	208	14.5591
...((((.(.(((((.....))))).)))))..	chr6:26204879-26205142(+)$1	1	191	224	14.5945
((((...(((((.((.....)))))))))))))	chr1:182856458-182856797(+)$1	1	150	183	13.1820
...(.(((((.((((.....))))))))))...	chr16:67263355-67263651(-)$1	1	173	206	15.1985
(((((((((.(((((.....))...))))))))	chr16:723789-724053(+)$1	1	31	64	11.7022
)(.((((((...(((.....)))......))))	chr16:68156102-68156408(+)$1	1	169	202	11.8245

#PSSM
e : 0.17	" : 0.11	# : 0.11	g : 0.11	b : 0.07	c : 0.07	f : 0.05	h : 0.05	i : 0.03	F : 0.03	d : 0.03	H : 0.01	! : 0.01	: : 0.01	G : 0.01	( : 0.01	
# : 0.17	e : 0.09	g : 0.09	b : 0.07	[ : 0.07	" : 0.07	h : 0.07	d : 0.05	f : 0.05	c : 0.05	i : 0.03	: : 0.01	G : 0.01	( : 0.01	F : 0.01	! : 0.01	a : 0.01	
# : 0.15	c : 0.13	g : 0.11	e : 0.09	d : 0.07	h : 0.07	! : 0.05	b : 0.05	f : 0.05	[ : 0.05	i : 0.03	: : 0.01	= : 0.01	F : 0.01	" : 0.01	
c : 0.17	d : 0.13	e : 0.11	f : 0.09	g : 0.09	# : 0.07	h : 0.07	b : 0.05	! : 0.03	i : 0.03	a : 0.03	[ : 0.01	= : 0.01	F : 0.01	
c : 0.15	d : 0.13	[ : 0.11	g : 0.09	e : 0.07	f : 0.07	h : 0.07	# : 0.05	" : 0.05	! : 0.03	i : 0.03	= : 0.03	b : 0.01	F : 0.01	
d : 0.15	[ : 0.13	f : 0.11	c : 0.09	e : 0.09	g : 0.07	! : 0.07	" : 0.05	h : 0.05	i : 0.03	= : 0.03	# : 0.01	F : 0.01	a : 0.01	
c : 0.15	d : 0.13	f : 0.11	e : 0.11	g : 0.07	" : 0.07	# : 0.05	h : 0.05	! : 0.03	a : 0.03	= : 0.03	[ : 0.03	b : 0.01	i : 0.01	: : 0.01	
c : 0.17	e : 0.13	# : 0.11	f : 0.09	d : 0.07	b : 0.07	" : 0.05	g : 0.03	= : 0.03	a : 0.03	[ : 0.03	h : 0.03	$ : 0.03	! : 0.01	i : 0.01	
c : 0.15	# : 0.13	e : 0.11	f : 0.09	" : 0.07	! : 0.05	d : 0.05	a : 0.05	b : 0.05	g : 0.03	= : 0.03	[ : 0.03	$ : 0.03	i : 0.01	h : 0.01	
[ : 0.19	! : 0.13	# : 0.11	f : 0.11	e : 0.11	" : 0.11	c : 0.05	d : 0.03	= : 0.03	$ : 0.03	g : 0.01	a : 0.01	
e : 0.23	[ : 0.11	f : 0.11	! : 0.09	d : 0.07	# : 0.07	" : 0.07	c : 0.07	a : 0.03	= : 0.03	$ : 0.03	g : 0.01	
d : 0.36	e : 0.19	[ : 0.09	c : 0.09	" : 0.05	f : 0.05	= : 0.03	$ : 0.03	# : 0.01	! : 0.01	b : 0.01	
d : 0.36	c : 0.30	e : 0.15	f : 0.05	[ : 0.03	= : 0.03	! : 0.01	b : 0.01	
d : 0.34	c : 0.24	e : 0.15	b : 0.11	f : 0.05	= : 0.03	[ : 0.03	
d : 0.28	c : 0.21	e : 0.15	b : 0.11	o : 0.07	f : 0.05	= : 0.03	a : 0.03	n : 0.01	
n : 0.84	o : 0.13	m : 0.01	
n : 0.84	o : 0.13	m : 0.01	
n : 0.84	o : 0.13	m : 0.01	
n : 0.84	o : 0.13	m : 0.01	
n : 0.82	o : 0.13	c : 0.03	
d : 0.32	c : 0.21	e : 0.15	b : 0.11	o : 0.05	f : 0.05	= : 0.03	a : 0.03	
d : 0.34	c : 0.24	e : 0.15	b : 0.11	f : 0.05	= : 0.03	] : 0.03	
d : 0.34	c : 0.24	e : 0.19	f : 0.05	= : 0.03	] : 0.03	3 : 0.03	4 : 0.01	b : 0.01	
d : 0.36	e : 0.23	c : 0.09	] : 0.05	f : 0.05	3 : 0.05	= : 0.03	g : 0.01	4 : 0.01	2 : 0.01	b : 0.01	6 : 0.01	
e : 0.26	2 : 0.15	c : 0.11	] : 0.09	3 : 0.09	f : 0.05	a : 0.03	= : 0.03	d : 0.03	4 : 0.03	g : 0.01	b : 0.01	6 : 0.01	
2 : 0.17	e : 0.13	] : 0.11	c : 0.09	f : 0.07	3 : 0.07	d : 0.05	4 : 0.05	a : 0.05	= : 0.03	b : 0.03	g : 0.01	h : 0.01	i : 0.01	6 : 0.01	
c : 0.17	e : 0.13	f : 0.09	d : 0.07	] : 0.07	2 : 0.07	g : 0.05	4 : 0.05	3 : 0.05	a : 0.05	b : 0.03	= : 0.03	h : 0.01	i : 0.01	6 : 0.01	
c : 0.15	d : 0.13	2 : 0.11	e : 0.11	f : 0.09	g : 0.07	4 : 0.05	a : 0.05	] : 0.03	b : 0.03	= : 0.03	h : 0.01	i : 0.01	3 : 0.01	6 : 0.01	
c : 0.19	d : 0.15	2 : 0.09	f : 0.09	e : 0.09	g : 0.07	4 : 0.05	= : 0.03	3 : 0.03	h : 0.03	b : 0.03	] : 0.03	i : 0.01	6 : 0.01	
c : 0.15	d : 0.13	f : 0.11	g : 0.09	e : 0.09	2 : 0.07	4 : 0.05	h : 0.05	= : 0.03	3 : 0.03	b : 0.03	i : 0.03	] : 0.03	a : 0.01	
f : 0.15	d : 0.15	c : 0.11	2 : 0.07	e : 0.07	h : 0.07	g : 0.07	= : 0.05	3 : 0.05	4 : 0.03	] : 0.03	i : 0.03	> : 0.01	b : 0.01	
c : 0.13	f : 0.13	e : 0.11	d : 0.11	g : 0.11	4 : 0.07	h : 0.07	2 : 0.03	= : 0.03	i : 0.03	3 : 0.03	b : 0.01	] : 0.01	> : 0.01	6 : 0.01	
c : 0.13	] : 0.11	g : 0.11	e : 0.09	d : 0.09	4 : 0.07	h : 0.07	f : 0.05	b : 0.03	2 : 0.03	= : 0.03	i : 0.03	3 : 0.03	> : 0.01	6 : 0.01	

#score	693.3725528839926
#seq	52
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_CDS_m2_run2.txt

#BEAR
::ccc[a[eeeeebboooooobb]eeeee]a333cccG	chr16:2285089-2285380(+)$1	291	64	102	12.8014
"ggggggg[ccca[annnnna]a]ccc]ggggggg333	chr20:62577425-62577662(-)$1	237	87	125	13.6762
=========="""ddddoooooodddd22=========	chr5:137499678-137499887(-)$1	209	15	53	13.7982
##hhhhhhhh"""bboooooobb333hhhhhhhh4444	chr13:77817886-77818174(-)$1	288	27	65	12.6716
f!!ffffff"""cccooooooccc22ffffff22ffff	chr15:44093273-44093485(+)$1	212	13	51	14.8312
da[ccc####a!!bbnnnnnbb22a4444ccc]a]ddd	chr22:20073959-20074195(+)$1	236	184	222	14.7137
!eeeee!!ccc!!bboooooobb]ccceeeee22bb]b	chr6:35888722-35888943(-)$1	221	114	152	14.7246
!dddd####ccccccnnnnnccc]ccc4444dddd]bb	chr17:65850574-65850851(+)$1	277	162	200	13.5502
eeeeeeeeee####aooooooa4444eeeee]eeeee:	chr12:19592977-19593296(+)$1	319	39	77	12.3817
[ccc####gggggggoooooogggggggccceeeee::	chr17:62498519-62498748(-)$1	229	68	106	13.1859
gggggdddd####aooooooa333dddd22ggggggg:	chr6:161530705-161530976(+)$1	271	9	47	13.0308
!a[a[a"""bb!!cccmmmmccc22bb333a]aa22ee	chr12:6696614-6696825(-)$1	211	74	112	13.4979
=======[eeeee[aooooooa]eeeee==========	chr9:95050000-95050283(-)$1	283	198	236	14.9174
ffccc[a####ddddnnnnndddd333a]ccc]fffff	chrX:103432677-103432985(+)$1	308	177	215	12.8117
###ccc[ccc"""bboooooobb22cccccc4444ddd	chr7:66514890-66515153(+)$1	263	197	235	16.8611
ff[ccc!!ffffffooooooffffff333ccc22ffff	chr2:95767341-95767570(-)$1	229	29	67	15.0216
gggggggffffffbboooooobb]ffffff333ggggg	chr10:127515058-127515271(+)$1	213	65	103	14.8899
"""ccc!!ddddrrrrrrrrrddddccc333ggggggg	chr21:38560739-38560998(+)$1	259	184	222	13.0786
d####ffffff[cccoooooocccffffff4444dddd	chr7:104782768-104783032(-)$1	264	4	42	14.9803
!a[bb"""a[ccc[aooooooa]ccca333bb]a22cc	chr12:76442923-76443127(-)$1	204	105	143	17.4551
c"""bb"""ffffffooooooffffff333bb333ccc	chr4:666991-667224(-)$1	233	103	141	16.8227
eeeee!!ccc!!cccooooooccc22ccc22eeeeebb	chr5:122717710-122717971(-)$1	261	71	109	14.6362
####ggggggg[cccnnnnnccc333ggggggg333cc	chr9:127685282-127685599(-)$1	317	211	249	14.8330
ggggggg[dddd[bboooooobbdddd333ggggggg:	chr19:54625151-54625420(+)$1	269	69	107	14.7689
cc[ccc!!ccc[cccoooooocccccc22ccc]cccdd	chr16:28962292-28962557(+)$1	265	190	228	17.7605
[ccc"""bb"""cccnnnnnccc]bb333ccc]eeeee	chr2:242092890-242093122(+)$1	232	108	146	14.5517
##bb####ccc!!cccnnnnncccccc333bb22ffff	chr20:32691261-32691470(-)$1	209	30	68	15.0047
bb"""ffffff[cccooooooccc]ffffff333bbad	chr11:65835365-65835594(+)$1	229	62	100	14.7614
ii$$$$$dddd[bboooooobb]dddd333iiiiiiii	chr7:104731586-104731862(+)$1	276	90	128	13.9241
ee"""ffffff!!bboooooobb22ffffff333eeee	chr8:41466846-41467104(+)$1	258	143	181	15.1374
cc!!bb[a[ffffffooooooffffff]a]bb4444cc	chr17:37680928-37681186(+)$1	258	43	81	14.7042
dd[ccc[ccc[ccc!!bblllbb]ccc333ccccccdd	chr7:1481975-1482218(-)$1	243	197	235	12.6365
cc!!ccc####ddddoooooodddd7777777ccc333	chr22:29885766-29886082(+)$1	316	154	192	12.2921
ddd!!cccccc!!bbnnnnnbb22ccc]ccc22dddd2	chr1:235392482-235392755(-)$1	273	104	142	11.9715
"""ccc"""ddddrrrrrrrrrdddd333cccgggggg	chr15:93480668-93480903(+)$1	235	163	201	13.6672
ee[ccc"""ffffffrrrrrrrrrffffff4444ccc]	chr2:25991530-25991830(-)$1	300	65	103	12.0087
f[ffffff####cccooooooccc666666ffffff]f	chr5:138699486-138699710(+)$1	224	141	179	12.7495
iiiiii!!dddd[bboooooobb]dddd333iiiiiii	chr12:133372622-133372904(-)$1	282	56	94	16.1153
gggg!!a[a!!ddddnnnnndddd22a22a22gggggg	chr5:121356163-121356447(+)$1	284	26	64	12.9942
$$ccc!!a[ggggggglllggggggga22cccgggggg	chr6:28264546-28264807(+)$1	261	96	134	12.3210
bb[bb"""a[ddddoooooodddd]a4444bb]bbccc	chr20:32684500-32684711(-)$1	211	105	143	13.9957
cdddda!!ccc!!cccnnnnnccc333ccc22a]dddd	chr19:8530107-8530352(+)$1	245	7	45	13.2661
ee!!bb[bb[ccc!!aooooooa]ccc]bbbb22eeee	chr7:100730493-100730736(+)$1	243	146	184	13.2832
cc[ccc==========mmmm==========22cccccc	chr13:41642700-41642961(+)$1	261	210	248	12.1172
%%bb####ccc[cccooooooccc333ccc333bb22i	chr21:47805672-47805925(+)$1	253	72	110	15.8172
e!!ccc[ccc!!a[cccnnnnnccc]a22cccccc]ee	chr3:101085352-101085597(-)$1	245	134	172	12.9877
=========[bbrrrrrrrrrbb]==========ffff	chr17:62500053-62500308(-)$1	255	146	184	12.0261
""dddd"""ffffffooooooffffff22dddddddd]	chr16:90025422-90025687(+)$1	265	96	134	13.9050
b[eeeee!!bb[cccooooooccc]bb22eeeee22bb	chr7:99697264-99697475(-)$1	211	111	149	13.6786
gggg[eeeee!!cccooooooccc333eeeee]ggggg	chr17:62529137-62529412(+)$1	275	7	45	15.4181

#otherMatches

#Seq PSSM
AGGGCAGGCGGGGGCGGGGAGGCUCCCUGGCACAGCCG	chr16:2285089-2285380(+)$1	291	64	102	12.8014
UGAUCAUCGAGGCCCUGGAUGUGCCCUGGGUGGUCUUG	chr20:62577425-62577662(-)$1	237	87	125	13.6762
GGGAAGGCUAAGGUGGAAAAAUCUUCAGGUAGUCUUUC	chr5:137499678-137499887(-)$1	209	15	53	13.7982
UUAAAGACAAAUUAGGAAUAUCUCAGUUGUCUUUUUUU	chr13:77817886-77818174(-)$1	288	27	65	12.6716
AUUGUGGGUAGCGGUGCAGUAACUAGACCUGCCUUUCC	chr15:44093273-44093485(+)$1	212	13	51	14.8312
ACGGCUAAAGCAAUCGUUCAGAGAGACAGAGUGGAUGA	chr22:20073959-20074195(+)$1	236	184	222	14.7137
AGCGGAAAGGUGAGCGGUGGAGCGGCCUCCGCCACGAG	chr6:35888722-35888943(-)$1	221	114	152	14.7246
AAGUCUGUGUAGCACACAAGGUGCCUGGUGUGACUGAC	chr17:65850574-65850851(+)$1	277	162	200	13.5502
CAGCGGCGGGAGCAGCAGCGACGAGACCCGCUCGUUGA	chr12:19592977-19593296(+)$1	319	39	77	12.3817
CUCCUAUUAUUAGACUUAUUCGUCUAAUGGAAGAGAUC	chr17:62498519-62498748(-)$1	229	68	106	13.1859
UUUCCAGAUUUUUCACUAGCGUACAUCUAAGGAAAACC	chr6:161530705-161530976(+)$1	271	9	47	13.0308
GGAUGUGGGCCCUUGAUUUUUUAUAGGAGGAGACAACA	chr12:6696614-6696825(-)$1	211	74	112	13.4979
UGCUGAGUGGAAGGUAUGUUGGGUUUUUUUCAGUAGAA	chr9:95050000-95050283(-)$1	283	198	236	14.9174
CAUGGUCAGUUCUGCAAGCAGCAGUGGGUCCAGUGUUG	chrX:103432677-103432985(+)$1	308	177	215	12.8117
UAGUCUUAGGCAUUCUCAUUUGAUACCUGGAAUGAAGU	chr7:66514890-66515153(+)$1	263	197	235	16.8611
AACUUGAAAUGUGGCAAAAACCACAUGGGCAAAAUUUC	chr2:95767341-95767570(-)$1	229	29	67	15.0216
UUUUCUGGUAACAACUAUUUUGUGUGUUAUUUACAGGA	chr10:127515058-127515271(+)$1	213	65	103	14.8899
CACGUCAUUUAGAAGAUAAAGCUAGGACCAUUUGAGAA	chr21:38560739-38560998(+)$1	259	184	222	13.0786
AAAAUGUAUUUUAUUGAUGGAGAUAAGUACUUAAUGAG	chr7:104782768-104783032(-)$1	264	4	42	14.9803
AGAAGAAGGAGAUGAGGAAAAUGAUCCAGACUAUGACC	chr12:76442923-76443127(-)$1	204	105	143	17.4551
UGAAACGGAUUGCCAGAGAAUUGGCAGAAGGUACGAGU	chr4:666991-667224(-)$1	233	103	141	16.8227
UUGUAGCUGAAGCAGAAAGAACUGGCUCAUAUGCAGGC	chr5:122717710-122717971(-)$1	261	71	109	14.6362
AAAAUAAAGCACAUGGUAUGCAUUUUUGUUUUAGUAGC	chr9:127685282-127685599(-)$1	317	211	249	14.8330
GCCUCCGUGUCCUCACAGUGAUGGGACCAGUGGAGGCC	chr19:54625151-54625420(+)$1	269	69	107	14.7689
GUCACCGACAGCGAUGAGGAAAUUCUGGAGGUCGCCAC	chr16:28962292-28962557(+)$1	265	190	228	17.7605
GGGGGGAGGAGGACCCAGAAGGUACCAGGCCCAGCUCC	chr2:242092890-242093122(+)$1	232	108	146	14.5517
AUGUUUGUGUAACUCAUAAUUUGAUGCUUUGCCUUUUA	chr20:32691261-32691470(-)$1	209	30	68	15.0047
CUCAGCUCUUCACUGUGUUGCCAGAGAAGAGAACAGCC	chr11:65835365-65835594(+)$1	229	62	100	14.7614
UGAUGAUAUAGAAGAAAAAACUCCUAUUAGUAAUGAAG	chr7:104731586-104731862(+)$1	276	90	128	13.9241
AGCCCUACACCAACGGUAAGAUGGGGGUGUGAUCCUUG	chr8:41466846-41467104(+)$1	258	143	181	15.1374
GCGACGUCAGCGACAAAGUGGUGUUGUAGUCGAAGAGC	chr17:37680928-37681186(+)$1	258	43	81	14.7042
GGUGCUUGGCCUCCCUUCGAGGAUGGAACCGCCAGCCC	chr7:1481975-1482218(-)$1	243	197	235	12.6365
AGAAGCCAAGACUCCAGCGAAGGAGGAAGCAAGGUCCC	chr22:29885766-29886082(+)$1	316	154	192	12.2921
CUGGAAGACUGAAUUGAAAGAAGAUAGCUCUAGCAGUg	chr1:235392482-235392755(-)$1	273	104	142	11.9715
AGCCAGAAGACCUGUCCCCAGAAGGUGCACUGUUUGCU	chr15:93480668-93480903(+)$1	235	163	201	13.6672
UUUCUUAUAGUCUGUUUUAUCUUUAUAGGCGCUAAagc	chr2:25991530-25991830(-)$1	300	65	103	12.0087
AACAUGUUUUUAUAGUCCAUUCUGGCCCUCAAUAUGAU	chr5:138699486-138699710(+)$1	224	141	179	12.7495
GGAGGGUCAGGCGCAGCCAUGUGGGCUUCAUUCCUUCU	chr12:133372622-133372904(-)$1	282	56	94	16.1153
UGUGAAGAGGAGAAGGAAUAUUUUGAUGAUAGCACAGA	chr5:121356163-121356447(+)$1	284	26	64	12.9942
GUGGUCACAUCUGAGUCUGACUCGGAGGAACCUCUGUG	chr6:28264546-28264807(+)$1	261	96	134	12.3210
GAAUCGAGUGUUCAACAUCAUGAGGGAAAAGAAUCCAG	chr20:32684500-32684711(-)$1	211	105	143	13.9957
AGUUUCUAAGUCUUGAGAAUAUCAUUUACUGUGCAAGC	chr19:8530107-8530352(+)$1	245	7	45	13.2661
GCGACUUCCUGGCCUGUAAAAUCUGCCUGGAGCAGCUG	chr7:100730493-100730736(+)$1	243	146	184	13.2832
UCACUAGUAGAAUAGAACAAUUUAUUUUAUGUUAGGAU	chr13:41642700-41642961(+)$1	261	210	248	12.1172
AGCUGAAAGACCAGGUUUUAUCCUUAAGUCACGAGAUA	chr21:47805672-47805925(+)$1	253	72	110	15.8172
ACUUUGAGUAAUGCCACCAAAAGUGCCUCUGCCGGUUC	chr3:101085352-101085597(-)$1	245	134	172	12.9877
UUGCUCUAAGUGGAUUGGAUAUGGUUGGAGUGGCACAG	chr17:62500053-62500308(-)$1	255	146	184	12.0261
ACACCAUCAUCUGGGGGCUCAUUCAGACCUGGUACACC	chr16:90025422-90025687(+)$1	265	96	134	13.9050
CAUCGGGAACAGGUGGCUCUGUAUGUGGACCUGGACGA	chr7:99697264-99697475(-)$1	211	111	149	13.6786
UAAGCAUAGGAAUUUAAAUGAGAAGAGCUUAUCCUUAA	chr17:62529137-62529412(+)$1	275	7	45	15.4181

#DB
..(((.(.(((((((......)).))))).)...))))	chr16:2285089-2285380(+)$1	1	64	102	12.8014
.(((((((.((((.(.....).).))).)))))))...	chr20:62577425-62577662(-)$1	1	87	125	13.6762
((((((((((...((((......))))..)))))))))	chr5:137499678-137499887(-)$1	1	15	53	13.7982
..((((((((...((......))...))))))))....	chr13:77817886-77818174(-)$1	1	27	65	12.6716
(..((((((...(((......)))..))))))..))))	chr15:44093273-44093485(+)$1	1	13	51	14.8312
((.(((....(..((.....))..)....))).).)))	chr22:20073959-20074195(+)$1	1	184	222	14.7137
.(((((..(((..((......)).))))))))..)).)	chr6:35888722-35888943(-)$1	1	114	152	14.7246
.((((....((((((.....))).)))....)))).))	chr17:65850574-65850851(+)$1	1	162	200	13.5502
((((((((((....(......)....))))).))))).	chr12:19592977-19593296(+)$1	1	39	77	12.3817
.(((....(((((((......)))))))))))))))..	chr17:62498519-62498748(-)$1	1	68	106	13.1859
(((((((((....(......)...))))..))))))).	chr6:161530705-161530976(+)$1	1	9	47	13.0308
.(.(.(...((..(((....)))..))...).))..))	chr12:6696614-6696825(-)$1	1	74	112	13.4979
(((((((.(((((.(......).)))))))))))))))	chr9:95050000-95050283(-)$1	1	198	236	14.9174
(((((.(....((((.....))))...).))).)))))	chrX:103432677-103432985(+)$1	1	177	215	12.8117
...(((.(((...((......))..))))))....)))	chr7:66514890-66515153(+)$1	1	197	235	16.8611
((.(((..((((((......))))))...)))..))))	chr2:95767341-95767570(-)$1	1	29	67	15.0216
(((((((((((((((......)).))))))...)))))	chr10:127515058-127515271(+)$1	1	65	103	14.8899
...(((..((((.........)))))))...)))))))	chr21:38560739-38560998(+)$1	1	184	222	13.0786
(....((((((.(((......)))))))))....))))	chr7:104782768-104783032(-)$1	1	4	42	14.9803
.(.((...(.(((.(......).))))...)).)..))	chr12:76442923-76443127(-)$1	1	105	143	17.4551
(...((...((((((......))))))...))...)))	chr4:666991-667224(-)$1	1	103	141	16.8227
(((((..(((..(((......)))..)))..)))))((	chr5:122717710-122717971(-)$1	1	71	109	14.6362
....(((((((.(((.....)))...)))))))...))	chr9:127685282-127685599(-)$1	1	211	249	14.8330
(((((((.((((.((......))))))...))))))).	chr19:54625151-54625420(+)$1	1	69	107	14.7689
((.(((..(((.(((......))))))..))).)))((	chr16:28962292-28962557(+)$1	1	190	228	17.7605
.(((...((...(((.....))).))...))).)))))	chr2:242092890-242093122(+)$1	1	108	146	14.5517
..((....(((..(((.....))))))...))..))))	chr20:32691261-32691470(-)$1	1	30	68	15.0047
((...((((((.(((......))).))))))...))))	chr11:65835365-65835594(+)$1	1	62	100	14.7614
((.....((((.((......)).))))...))))))))	chr7:104731586-104731862(+)$1	1	90	128	13.9241
((...((((((..((......))..))))))...))))	chr8:41466846-41467104(+)$1	1	143	181	15.1374
((..((.(.((((((......)))))).).))....))	chr17:37680928-37681186(+)$1	1	43	81	14.7042
((.(((.(((.(((..((...)).)))...))))))))	chr7:1481975-1482218(-)$1	1	197	235	12.6365
((..(((....((((......)))).......)))...	chr22:29885766-29886082(+)$1	1	154	192	12.2921
(((..((((((..((.....))..))).)))..)))).	chr1:235392482-235392755(-)$1	1	104	142	11.9715
...(((...((((.........))))...)))))))))	chr15:93480668-93480903(+)$1	1	163	201	13.6672
((.(((...((((((.........))))))....))).	chr2:25991530-25991830(-)$1	1	65	103	12.0087
(.((((((....(((......)))......)))))).)	chr5:138699486-138699710(+)$1	1	141	179	12.7495
((((((..((((.((......)).))))...)))))))	chr12:133372622-133372904(-)$1	1	56	94	16.1153
((((..(.(..((((.....))))..)..)..))))))	chr5:121356163-121356447(+)$1	1	26	64	12.9942
..(((..(.(((((((...))))))))..)))))))))	chr6:28264546-28264807(+)$1	1	96	134	12.3210
((.((...(.((((......)))).)....)).)))))	chr20:32684500-32684711(-)$1	1	105	143	13.9957
((((((..(((..(((.....)))...)))..).))))	chr19:8530107-8530352(+)$1	1	7	45	13.2661
((..((.((.(((..(......).))).))))..))))	chr7:100730493-100730736(+)$1	1	146	184	13.2832
((.(((((((((((((....))))))))))..))))))	chr13:41642700-41642961(+)$1	1	210	248	12.1172
..((....(((.(((......)))...)))...))..)	chr21:47805672-47805925(+)$1	1	72	110	15.8172
(..(((.(((..(.(((.....))).)..)))))).))	chr3:101085352-101085597(-)$1	1	134	172	12.9877
(((((((((.((.........)).))))))))))((((	chr17:62500053-62500308(-)$1	1	146	184	12.0261
..((((...((((((......))))))..)))))))).	chr16:90025422-90025687(+)$1	1	96	134	13.9050
(.(((((..((.(((......))).))..)))))..))	chr7:99697264-99697475(-)$1	1	111	149	13.6786
((((.(((((..(((......)))...))))).)))))	chr17:62529137-62529412(+)$1	1	7	45	15.4181

#PSSM
e : 0.12	c : 0.12	g : 0.10	" : 0.08	# : 0.08	f : 0.08	d : 0.08	! : 0.08	= : 0.06	b : 0.06	[ : 0.04	i : 0.04	: : 0.02	$ : 0.02	% : 0.02	
g : 0.12	e : 0.12	c : 0.12	# : 0.10	d : 0.08	" : 0.08	= : 0.06	a : 0.06	! : 0.04	f : 0.04	b : 0.04	i : 0.04	[ : 0.04	: : 0.02	$ : 0.02	% : 0.02	
[ : 0.18	g : 0.12	c : 0.10	! : 0.10	" : 0.10	e : 0.08	d : 0.08	= : 0.06	# : 0.06	b : 0.04	h : 0.02	$ : 0.02	f : 0.02	i : 0.02	
c : 0.30	g : 0.12	e : 0.08	b : 0.08	! : 0.08	= : 0.06	d : 0.06	" : 0.06	f : 0.04	# : 0.04	h : 0.02	a : 0.02	$ : 0.02	i : 0.02	
c : 0.27	g : 0.10	b : 0.10	e : 0.08	# : 0.08	= : 0.06	d : 0.06	" : 0.06	f : 0.04	[ : 0.04	! : 0.04	h : 0.02	$ : 0.02	i : 0.02	
c : 0.23	f : 0.10	g : 0.08	e : 0.08	# : 0.08	= : 0.06	" : 0.06	b : 0.06	! : 0.06	[ : 0.04	d : 0.04	a : 0.04	h : 0.02	$ : 0.02	i : 0.02	
! : 0.16	" : 0.16	f : 0.10	# : 0.10	[ : 0.10	g : 0.08	= : 0.08	a : 0.06	e : 0.06	c : 0.04	h : 0.02	d : 0.02	$ : 0.02	
# : 0.14	! : 0.14	" : 0.14	f : 0.12	c : 0.10	[ : 0.08	= : 0.06	g : 0.04	e : 0.04	d : 0.04	b : 0.04	a : 0.04	h : 0.02	
c : 0.19	f : 0.12	# : 0.10	d : 0.10	" : 0.10	e : 0.08	[ : 0.06	= : 0.06	a : 0.06	g : 0.04	b : 0.04	h : 0.02	! : 0.02	
c : 0.23	f : 0.18	# : 0.10	d : 0.10	e : 0.08	[ : 0.08	g : 0.06	= : 0.04	" : 0.04	b : 0.04	h : 0.02	! : 0.02	
c : 0.19	f : 0.18	d : 0.12	" : 0.10	# : 0.10	! : 0.08	g : 0.06	b : 0.06	e : 0.04	a : 0.02	[ : 0.02	= : 0.02	
! : 0.19	d : 0.16	[ : 0.14	f : 0.12	c : 0.10	" : 0.10	# : 0.06	e : 0.04	g : 0.04	= : 0.02	b : 0.02	
c : 0.30	! : 0.14	f : 0.12	d : 0.10	" : 0.06	e : 0.04	a : 0.04	# : 0.04	g : 0.04	r : 0.04	[ : 0.04	b : 0.02	= : 0.02	
c : 0.32	b : 0.21	d : 0.10	f : 0.10	[ : 0.08	r : 0.06	g : 0.04	# : 0.02	a : 0.02	! : 0.02	= : 0.02	
c : 0.32	b : 0.19	a : 0.08	d : 0.08	o : 0.08	f : 0.08	r : 0.06	g : 0.04	! : 0.04	= : 0.02	
o : 0.58	n : 0.16	c : 0.08	r : 0.08	d : 0.02	! : 0.02	g : 0.02	a : 0.02	= : 0.02	
o : 0.60	n : 0.19	r : 0.08	m : 0.04	d : 0.02	b : 0.02	l : 0.02	c : 0.02	
o : 0.62	n : 0.21	r : 0.08	m : 0.04	b : 0.02	l : 0.02	
o : 0.62	n : 0.21	r : 0.08	m : 0.04	l : 0.04	
o : 0.62	n : 0.21	r : 0.08	m : 0.04	l : 0.02	g : 0.02	
o : 0.54	c : 0.08	r : 0.08	b : 0.06	d : 0.06	n : 0.06	a : 0.04	f : 0.02	l : 0.02	g : 0.02	= : 0.02	
c : 0.30	b : 0.25	d : 0.10	f : 0.08	a : 0.06	o : 0.04	g : 0.04	r : 0.04	] : 0.02	3 : 0.02	= : 0.02	n : 0.02	
c : 0.32	b : 0.19	d : 0.12	f : 0.08	] : 0.06	a : 0.04	2 : 0.04	g : 0.04	o : 0.02	4 : 0.02	3 : 0.02	r : 0.02	= : 0.02	
c : 0.25	] : 0.19	d : 0.18	2 : 0.10	f : 0.08	3 : 0.06	g : 0.04	4 : 0.02	e : 0.02	r : 0.02	= : 0.02	
c : 0.19	d : 0.16	f : 0.14	3 : 0.12	2 : 0.12	] : 0.06	e : 0.04	g : 0.04	= : 0.04	a : 0.02	4 : 0.02	b : 0.02	6 : 0.02	
c : 0.21	f : 0.18	d : 0.12	3 : 0.12	2 : 0.06	b : 0.06	e : 0.04	4 : 0.04	g : 0.04	= : 0.04	7 : 0.02	6 : 0.02	a : 0.02	] : 0.02	
c : 0.21	f : 0.18	3 : 0.14	d : 0.10	a : 0.08	e : 0.06	4 : 0.04	g : 0.04	b : 0.04	= : 0.04	h : 0.02	7 : 0.02	6 : 0.02	
3 : 0.19	2 : 0.14	f : 0.12	e : 0.10	c : 0.10	] : 0.08	4 : 0.06	g : 0.04	d : 0.04	= : 0.04	h : 0.02	a : 0.02	7 : 0.02	6 : 0.02	
3 : 0.23	2 : 0.16	f : 0.12	c : 0.12	e : 0.08	4 : 0.06	= : 0.06	g : 0.04	h : 0.02	] : 0.02	a : 0.02	7 : 0.02	6 : 0.02	b : 0.02	
c : 0.25	3 : 0.18	f : 0.12	= : 0.08	e : 0.08	] : 0.04	g : 0.04	4 : 0.04	2 : 0.04	h : 0.02	7 : 0.02	6 : 0.02	a : 0.02	b : 0.02	d : 0.02	
c : 0.23	b : 0.12	g : 0.08	f : 0.08	e : 0.08	3 : 0.08	2 : 0.08	= : 0.06	4 : 0.06	a : 0.04	h : 0.02	i : 0.02	7 : 0.02	d : 0.02	
c : 0.18	b : 0.12	3 : 0.10	g : 0.10	e : 0.10	2 : 0.08	= : 0.06	4 : 0.06	f : 0.04	d : 0.04	] : 0.04	i : 0.04	h : 0.02	7 : 0.02	
g : 0.16	] : 0.14	3 : 0.12	2 : 0.12	e : 0.08	4 : 0.08	c : 0.08	= : 0.06	d : 0.04	a : 0.04	i : 0.04	h : 0.02	f : 0.02	
g : 0.18	3 : 0.10	2 : 0.10	e : 0.10	c : 0.10	4 : 0.08	= : 0.06	a : 0.06	d : 0.06	f : 0.04	i : 0.04	b : 0.04	h : 0.02	] : 0.02	
g : 0.18	c : 0.14	f : 0.12	e : 0.12	d : 0.10	b : 0.08	4 : 0.06	2 : 0.06	= : 0.04	3 : 0.04	i : 0.04	] : 0.02	
g : 0.16	c : 0.14	f : 0.12	d : 0.12	e : 0.12	2 : 0.08	3 : 0.06	= : 0.04	4 : 0.04	b : 0.04	] : 0.04	i : 0.04	
c : 0.16	d : 0.16	g : 0.16	e : 0.12	f : 0.10	b : 0.06	3 : 0.04	= : 0.04	] : 0.04	i : 0.04	4 : 0.02	: : 0.02	a : 0.02	2 : 0.02	
d : 0.14	f : 0.12	g : 0.12	c : 0.12	e : 0.10	b : 0.08	: : 0.08	i : 0.06	3 : 0.04	= : 0.04	] : 0.04	G : 0.02	4 : 0.02	2 : 0.02	

#score	703.0374434731161
#seq	50
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_CDS_m3_run1.txt

#BEAR
b[a[bb[dddd"""eeeeemmmmeeeee]ddddbb]ab	chr6:28872278-28872604(-)$1	326	134	172	10.9816
ggggggg[a####ffffffmmmmffffffagggggggb	chr9:114937144-114937516(-)$1	372	267	305	12.4966
===========[bb!!bbammmma]bb]bb]=======	chr19:39880696-39880991(-)$1	295	95	133	13.8236
e"""dddd"""bb[eeeeemmmmeeeee]bb4444ddd	chr11:419618-419892(-)$1	274	151	189	10.9603
ddd[bbffffff[dddd[ammmma]dddd]ffffff]b	chr20:62373515-62373802(+)$1	287	53	91	11.2814
dddd:===========[bbmmmmbb]===========:	chr11:637269-637557(+)$1	288	138	176	11.5590
!eeeeea[ggggggg!!bbmmmmbb4444ggggggg]a	chr7:150777692-150777916(-)$1	224	9	47	13.4587
##==========[bb[cccmmmmcccbb==========	chr12:51399352-51399608(-)$1	256	68	106	14.9716
hhhhhhh!!dddd"""cccmmmmccc333ddddhhhhh	chr11:69489740-69490059(-)$1	319	149	187	12.6183
a[hhhhhhhh[a[bb[aooooooa]bb]a]hhhhhhhh	chr17:30264232-30264486(+)$1	254	133	171	9.5710
iiiiiiiii[ggggggg[ammmma]gggggggiiiiii	chr16:2264514-2264779(-)$1	265	109	147	14.4539
!ccc!!a[ccc[dddd!!aooooooa22dddd]ccc]a	chr7:77166712-77166972(+)$1	260	99	137	11.3041
"""bb[iiiiiiiii[cccmmmmccc]iiiiiiiiibb	chr9:132637426-132637691(+)$1	265	99	137	14.5349
========="""bb[ddddmmmmdddd]bb========	chr4:53279-53548(+)$1	269	170	208	14.5991
gggg[dddd[ccc[ccc[bbmmmmbbccc22ccc22dd	chr16:28847427-28847738(+)$1	311	232	270	9.8311
eeeeeeeeee[bb!!ddddmmmmddddbbeeeee]eee	chr7:99755806-99756075(-)$1	269	182	220	11.6169
[accc[ccc####bb[cccmmmmccc]bb22ccc]ccc	chr3:52514258-52514537(+)$1	279	222	260	13.6120
:bb[a[ffffff[ccc[ccclllccc]cccffffff]a	chr6:31831359-31831674(-)$1	315	191	229	10.3010
ee[ccc[eeeee[ffffffmmmmffffffeeeeeccce	chr14:102515875-102516152(+)$1	277	210	248	10.9338
d[ccc[bb[ffffff[aooooooa]ffffff]bb]ccc	chr3:196730153-196730421(+)$1	268	157	195	9.6620
!!bb[dddd[bb[ccc[ccclllccc]cccbbdddd]b	chr6:155054885-155055144(+)$1	259	177	215	10.7367
gggggbb[ccc[gggggggmmmmggggggg22ccc22b	chr7:6523402-6523700(-)$1	298	8	46	12.2632
b[ffffff[dddd[bbcccmmmmccc333bb]ddddff	chr20:42086836-42087114(+)$1	278	231	269	11.6994
ccc]cccccc"""bb[cccmmmmccc]bb]ccccccbb	chr1:155658076-155658332(-)$1	256	65	103	12.9249
[dddd!!bb!!ccc[cccooooooccc]ccc22bb22d	chr9:140260973-140261231(-)$1	258	119	157	10.5623
:bb[eeeee[dddd[ddddmmmmdddd333ddddeeee	chr2:55276587-55276909(-)$1	322	23	61	11.3643
eeeee!!ffffffa!!cccmmmmccc22a]ffffff44	chr16:2256342-2256595(+)$1	253	113	151	13.3786
ca[dddd[ffffff[eeeeellleeeee]ffffff]dd	chr3:9851542-9851799(+)$1	257	181	219	9.5147
!!eeeee[a[a[ccc[cccmmmmccc]ccc]a]a]eee	chrX:41193696-41193953(+)$1	257	81	119	14.2388
!!ggggggg"""a!!ddddmmmmdddd22a22gggggg	chr5:179248455-179248810(+)$1	355	154	192	14.4076
:eeeeeffffff!!a!!ccclllccc22a]ffffff]e	chr3:47040270-47040595(+)$1	325	134	172	10.9272
eeeee####hhhhhhhhccclllccc333hhhhhhhh5	chr8:145111054-145111317(-)$1	263	19	57	9.5839
==========bb"""ddddmmmmdddd333bb]=====	chr8:145742850-145743128(-)$1	278	45	83	14.8589
IIggggggg[dddd!!ccclllccc]dddd]ggggggg	chr5:179248034-179248279(+)$1	245	179	217	9.8733
gg[a####ggggggg[cccmmmmcccggggggg333a]	chr8:145113459-145113696(-)$1	237	65	103	14.2171
ccc[ccc[dddda[eeeeemmmmeeeee22a]dddd]c	chr8:145687759-145688000(-)$1	241	134	172	11.8890
dd####eeeeeccc[ddddlllddddccc22eeeee44	chr17:46985943-46986202(+)$1	259	188	226	10.3579
h[ddddggggggg"""cccmmmmccc333ggggggg22	chr1:2160042-2160342(+)$1	300	24	62	14.4975
ee####dddd[dddd[aooooooa]dddd]dddd]eee	chr16:4896057-4896363(-)$1	306	81	119	9.9679
cc[ccc[bb[dddd[ddddmmmmddddddddbbccccc	chr9:128003082-128003297(-)$1	215	104	142	11.7363
dd[dddd!!eeeee!!cccmmmmccc22eeeee]dddd	chr1:26496910-26497204(+)$1	294	235	273	12.3966
gggggggeeeee"""ddddmmmmdddd]eeeee]gggg	chr5:140048626-140048866(+)$1	240	96	134	13.1642
ceeeeeaccc[ddddccclllccc]dddd22ccc333a	chr10:100185570-100185879(-)$1	309	181	219	9.7410
b"""bb[ccc[bb[eeeeemmmmeeeee]bb22ccc]b	chr19:11145700-11145962(+)$1	262	29	67	11.3937
ccceeeee[abb[a[ddddmmmmdddd]a]bb22a]ee	chr7:150777586-150777892(-)$1	306	142	180	12.3130
ecccdddd[dddd!!ddddmmmmdddd]dddddddd]c	chr1:22177838-22178144(-)$1	306	175	213	12.1635
=========="""fffffflllffffff]=========	chr17:73823576-73823859(-)$1	283	161	199	12.1305
iiiiiiii[hhhhhhhhbbmmmmbb22hhhhhhhhiii	chr21:34923164-34923426(+)$1	262	93	131	10.5935

#otherMatches

#Seq PSSM
GCUGACUGUCUUCCUUGUGUCUCUACAGUGGACGUGAC	chr6:28872278-28872604(-)$1	326	134	172	10.9816
GGAGCUCAGAGAAGCGGGGGGCUCCCCGCCGGGCUUCC	chr9:114937144-114937516(-)$1	372	267	305	12.4966
AGCCCCACUGUGCUUUCCCAGGAGCGGUGGGGCAGUGG	chr19:39880696-39880991(-)$1	295	95	133	13.8236
GCUCUGGUGCAGGGACCUGGCUGCAGGUGCUGGAGACC	chr11:419618-419892(-)$1	274	151	189	10.9603
CCUGGUGCACCUGGGGUGCGGCGGGGCCUGGGGUGCGG	chr20:62373515-62373802(+)$1	287	53	91	11.2814
CGGCGGCGCUGGUGGGGGGCGUGCUGCUCAUCGGCGCG	chr11:637269-637557(+)$1	288	138	176	11.5590
UCCGGGCGGCUAUCUAGGGGCUGCUGGGAAGAUGGCGG	chr7:150777692-150777916(-)$1	224	9	47	13.4587
UCCUUUUUAAAAUGGUGGCUCUUGUCCUUUUUGGGAAG	chr12:51399352-51399608(-)$1	256	68	106	14.9716
CAGCGGCUUCGCCGCCGGCUGCGGCCCAGGGCGGCUGC	chr11:69489740-69490059(-)$1	319	149	187	12.6183
cgacggcUUCGGGCGGCAAAUCCGGCGGCGGGAGCUGU	chr17:30264232-30264486(+)$1	254	133	171	9.5710
GGCGUGCUGUGGCGCGGGGAGACCGCCGUGCCUGGCGC	chr16:2264514-2264779(-)$1	265	109	147	14.4539
ggcgggcgggcggcgggggggccAGCGACCGCAGCCGG	chr7:77166712-77166972(+)$1	260	99	137	11.3041
UCUGCAUGUGUCUGAAGGUGGCAGCCGUCAGGCACAGC	chr9:132637426-132637691(+)$1	265	99	137	14.5349
GGCGGCGGGACCGAGUCUGCGAACGGAGUCCCCGCUGC	chr4:53279-53548(+)$1	269	170	208	14.5991
CAGAAGCCACAGUCGCCGCCGCCAGGGGCUUGCUCCUG	chr16:28847427-28847738(+)$1	311	232	270	9.8311
CCGCCCUGGCCGCCCUGGCCUCGGUCAGCGCCGGAGGC	chr7:99755806-99756075(-)$1	269	182	220	11.6169
UGCCUGGCCUGAUGCCAGCUGUUGCUUGCUUGGUGAGG	chr3:52514258-52514537(+)$1	279	222	260	13.6120
ACUACAUGUCCAAGAGCCUUCUAAAGAUUCUGGGCAAG	chr6:31831359-31831674(-)$1	315	191	229	10.3010
UGAGGCGUACAUCACUGCCACCAGGCAGUAUGUGGCCC	chr14:102515875-102516152(+)$1	277	210	248	10.9338
GCGCCGGGGCCGCUGGGGACGAACGCGGCGGGUCAGGC	chr3:196730153-196730421(+)$1	268	157	195	9.6620
AGGUUGGUAUGGCAGCCGGGUUCCCCUGCUCCUGCCCG	chr6:155054885-155055144(+)$1	259	177	215	10.7367
cgccAUGAACAUUUUCCGGCUGACUGGGGACCUGUCCC	chr7:6523402-6523700(-)$1	298	8	46	12.2632
GAGCUCUGCGGCGAGCGCGUGAUCGUAGAGCACGCCCG	chr20:42086836-42087114(+)$1	278	231	269	11.6994
CGUGCGCGCUACAUGGCCGGAGUCGGGCGAAGCGGGGG	chr1:155658076-155658332(-)$1	256	65	103	12.9249
UGUGGCCUGACCGUGUGUCCCCCUGCAGAUGAGCAUCC	chr9:140260973-140261231(-)$1	258	119	157	10.5623
CAGUGGGUGAGUGCCGCGACCUCUCGCUUCGCGCCGCC	chr2:55276587-55276909(-)$1	322	23	61	11.3643
GACCUCAGCACAGCCAAGCUUCAGUUCAGCCUGUGUCC	chr16:2256342-2256595(+)$1	253	113	151	13.3786
GCGAGGGAGCUGGGGCCCGGGCGCCGGGGCUCGGCCUC	chr3:9851542-9851799(+)$1	257	181	219	9.5147
GGCUUUUGUGUGUGCGUGCGCAGGCGGGCGGAGGGGGA	chrX:41193696-41193953(+)$1	257	81	119	14.2388
GACGCGGGUAAACAAGCGCGGGGGUGCGGGGGACUCGC	chr5:179248455-179248810(+)$1	355	154	192	14.4076
AGGGGAGUGGGGGCCCGACACAGUGUGAGACCCUGCAU	chr3:47040270-47040595(+)$1	325	134	172	10.9272
GGGUGGACAAGGUUGGUGGUCCUGCCUGUGCCAGCCUG	chr8:145111054-145111317(-)$1	263	19	57	9.5839
UGCGGGCUGCCCAGGGGCCGAGGGGCUGAGGGCGCGGC	chr8:145742850-145743128(-)$1	278	45	83	14.8589
CCUCCCUUCUCGGCGACGCCUGGCGGGCCGUGAGGGGG	chr5:179248034-179248279(+)$1	245	179	217	9.8733
UGGUGGGAGACGAGGUGCCACUGGGUUUUUGUCAUAGG	chr8:145113459-145113696(-)$1	237	65	103	14.2171
UUGGCGGGCGCCCGGCAGCUACAGCUGCAGGAGGCGGC	chr8:145687759-145688000(-)$1	241	134	172	11.8890
CGACUGGGACGGCGAGCGCACCGCGCCGCAGUGUCUAC	chr17:46985943-46986202(+)$1	259	188	226	10.3579
CGUGAUCGGCCGUGAGCcggcggcggggggcggccggg	chr1:2160042-2160342(+)$1	300	24	62	14.4975
CGUAUUGAGUGGGUUGAAGGAGAUGGACUGGCUUUUGC	chr16:4896057-4896363(-)$1	306	81	119	9.9679
CUGCCAGCGUCGGCGUGUUCAAGAACGGCCGCGUGGAG	chr9:128003082-128003297(-)$1	215	104	142	11.7363
GGCGGCUGGCAGUGCCCACGGAAGUGUCCACUGAGGUC	chr1:26496910-26497204(+)$1	294	235	273	12.3966
UGGCUUUGGGGCCACAAGUGACCGCUUUGCCCUGAGAG	chr5:140048626-140048866(+)$1	240	96	134	13.1642
GCCUUCCGGCCCCAGAAGGAUCUUCCUGGAUGCCAACG	chr10:100185570-100185879(-)$1	309	181	219	9.7410
GAAGAUGUUCGGCCGUGGCUCCCGCCACCGCAAGGAGG	chr19:11145700-11145962(+)$1	262	29	67	11.3937
AGGGCUGCGGGAGGGCAGCGGGAGCUGGUGUUAGCGGC	chr7:150777586-150777892(-)$1	306	142	180	12.3130
AGGGCUAGAGGCUCCCCUGAGAUCAGGAAGCCCUGGAC	chr1:22177838-22178144(-)$1	306	175	213	12.1635
CCUGGCCUUCCUGUUCCAGCCACUGGGGUGGGGGCCAG	chr17:73823576-73823859(-)$1	283	161	199	12.1305
GGCUGCCUUCGGCAACUAGGGCACUGGAGUUGUCGGGG	chr21:34923164-34923426(+)$1	262	93	131	10.5935

#DB
(.(.((.((((...(((((....))))).)))))).))	chr6:28872278-28872604(-)$1	1	134	172	10.9816
(((((((.(....((((((....)))))))))))))))	chr9:114937144-114937516(-)$1	1	267	305	12.4966
(((((((((((.((..(((....).)).)).)))))))	chr19:39880696-39880991(-)$1	1	95	133	13.8236
(...((((...((.(((((....))))).))....)))	chr11:419618-419892(-)$1	1	151	189	10.9603
(((.((((((((.((((.(....).)))).)))))).)	chr20:62373515-62373802(+)$1	1	53	91	11.2814
)))).(((((((((((.((....)).))))))))))).	chr11:637269-637557(+)$1	1	138	176	11.5590
.((((((.(((((((..((....))....))))))).)	chr7:150777692-150777916(-)$1	1	9	47	13.4587
..((((((((((.((.(((....)))))))))))))))	chr12:51399352-51399608(-)$1	1	68	106	14.9716
(((((((..((((...(((....)))...)))))))))	chr11:69489740-69490059(-)$1	1	149	187	12.6183
(.((((((((.(.((.(......).)).).))))))))	chr17:30264232-30264486(+)$1	1	133	171	9.5710
(((((((((.(((((((.(....).)))))))))))))	chr16:2264514-2264779(-)$1	1	109	147	14.4539
.(((..(.(((.((((..(......)..)))).))).)	chr7:77166712-77166972(+)$1	1	99	137	11.3041
...((.(((((((((.(((....))).)))))))))))	chr9:132637426-132637691(+)$1	1	99	137	14.5349
(((((((((...((.((((....)))).))))))))))	chr4:53279-53548(+)$1	1	170	208	14.5991
((((.((((.(((.(((.((....)))))..)))..))	chr16:28847427-28847738(+)$1	1	232	270	9.8311
((((((((((.((..((((....))))))))))).)))	chr7:99755806-99756075(-)$1	1	182	220	11.6169
.((((.(((....((.(((....))).))..))).)))	chr3:52514258-52514537(+)$1	1	222	260	13.6120
.((.(.((((((.(((.(((...))).))))))))).)	chr6:31831359-31831674(-)$1	1	191	229	10.3010
((.(((.(((((.((((((....)))))))))))))))	chr14:102515875-102516152(+)$1	1	210	248	10.9338
(.(((.((.((((((.(......).)))))).)).)))	chr3:196730153-196730421(+)$1	1	157	195	9.6620
..((.((((.((.(((.(((...))).))))))))).)	chr6:155054885-155055144(+)$1	1	177	215	10.7367
(((((((.(((.(((((((....)))))))..)))..)	chr7:6523402-6523700(-)$1	1	8	46	12.2632
(.((((((.((((.(((((....)))...)).))))))	chr20:42086836-42087114(+)$1	1	231	269	11.6994
))).)))(((...((.(((....))).)).)))(((((	chr1:155658076-155658332(-)$1	1	65	103	12.9249
.((((..((..(((.(((......))).)))..))..)	chr9:140260973-140261231(-)$1	1	119	157	10.5623
.((.(((((.((((.((((....))))...))))))))	chr2:55276587-55276909(-)$1	1	23	61	11.3643
(((((..(((((((..(((....)))..).))))))..	chr16:2256342-2256595(+)$1	1	113	151	13.3786
((.((((.((((((.(((((...))))).)))))).))	chr3:9851542-9851799(+)$1	1	181	219	9.5147
..(((((.(.(.(((.(((....))).))).).).)))	chrX:41193696-41193953(+)$1	1	81	119	14.2388
..(((((((...(..((((....))))..)..))))))	chr5:179248455-179248810(+)$1	1	154	192	14.4076
.(((((((((((..(..(((...)))..).)))))).)	chr3:47040270-47040595(+)$1	1	134	172	10.9272
(((((....(((((((((((...)))...)))))))).	chr8:145111054-145111317(-)$1	1	19	57	9.5839
((((((((((((...((((....))))...)).)))))	chr8:145742850-145743128(-)$1	1	45	83	14.8589
))(((((((.((((..(((...))).)))).)))))))	chr5:179248034-179248279(+)$1	1	179	217	9.8733
((.(....(((((((.(((....))))))))))...).	chr8:145113459-145113696(-)$1	1	65	103	14.2171
(((.(((.(((((.(((((....)))))..).)))).)	chr8:145687759-145688000(-)$1	1	134	172	11.8890
((....((((((((.((((...)))))))..)))))..	chr17:46985943-46986202(+)$1	1	188	226	10.3579
(.(((((((((((...(((....)))...)))))))..	chr1:2160042-2160342(+)$1	1	24	62	14.4975
((....((((.((((.(......).)))).)))).)))	chr16:4896057-4896363(-)$1	1	81	119	9.9679
((.(((.((.((((.((((....)))))))))))))))	chr9:128003082-128003297(-)$1	1	104	142	11.7363
((.((((..(((((..(((....)))..))))).))))	chr1:26496910-26497204(+)$1	1	235	273	12.3966
((((((((((((...((((....)))).))))).))))	chr5:140048626-140048866(+)$1	1	96	134	13.1642
)(((((((((.(((((((...))).))))..)))...)	chr10:100185570-100185879(-)$1	1	181	219	9.7410
(...((.(((.((.(((((....))))).))..))).)	chr19:11145700-11145962(+)$1	1	29	67	11.3937
)))(((((.(((.(.((((....)))).).))..).))	chr7:150777586-150777892(-)$1	1	142	180	12.3130
)(((((((.((((..((((....)))).)))))))).)	chr1:22177838-22178144(-)$1	1	175	213	12.1635
((((((((((...((((((...)))))).)))))))))	chr17:73823576-73823859(-)$1	1	161	199	12.1305
((((((((.((((((((((....))..)))))))))))	chr21:34923164-34923426(+)$1	1	93	131	10.5935

#PSSM
e : 0.14	c : 0.12	g : 0.10	d : 0.10	! : 0.10	= : 0.08	b : 0.06	: : 0.06	h : 0.04	i : 0.04	[ : 0.04	# : 0.02	a : 0.02	" : 0.02	I : 0.02	
e : 0.16	c : 0.12	[ : 0.10	g : 0.10	d : 0.10	= : 0.08	" : 0.06	! : 0.06	i : 0.04	a : 0.04	b : 0.04	# : 0.02	h : 0.02	I : 0.02	
e : 0.14	c : 0.14	g : 0.12	= : 0.10	[ : 0.10	d : 0.08	" : 0.06	b : 0.06	h : 0.04	i : 0.04	# : 0.04	a : 0.02	f : 0.02	
e : 0.16	g : 0.12	c : 0.12	[ : 0.10	= : 0.10	d : 0.10	" : 0.04	h : 0.04	i : 0.04	b : 0.04	# : 0.04	f : 0.02	] : 0.02	a : 0.02	
e : 0.18	d : 0.12	c : 0.12	g : 0.10	= : 0.10	b : 0.08	# : 0.06	h : 0.04	i : 0.04	[ : 0.04	: : 0.02	! : 0.02	a : 0.02	f : 0.02	
d : 0.14	e : 0.14	= : 0.12	b : 0.08	g : 0.08	[ : 0.08	c : 0.08	# : 0.08	! : 0.06	h : 0.04	i : 0.04	f : 0.02	
d : 0.14	= : 0.12	g : 0.10	e : 0.10	[ : 0.08	f : 0.08	a : 0.06	i : 0.06	c : 0.06	h : 0.04	b : 0.04	! : 0.04	# : 0.04	
[ : 0.14	d : 0.12	= : 0.12	e : 0.12	f : 0.10	c : 0.08	i : 0.06	b : 0.06	g : 0.06	! : 0.04	# : 0.04	h : 0.02	
= : 0.12	c : 0.12	d : 0.10	f : 0.10	g : 0.10	e : 0.10	[ : 0.10	a : 0.04	! : 0.04	i : 0.04	b : 0.04	" : 0.02	h : 0.02	# : 0.02	
[ : 0.14	d : 0.12	f : 0.12	= : 0.10	c : 0.10	e : 0.10	" : 0.06	g : 0.06	h : 0.06	# : 0.04	i : 0.02	! : 0.02	a : 0.02	
d : 0.16	f : 0.12	" : 0.10	[ : 0.10	g : 0.08	e : 0.08	= : 0.06	c : 0.06	b : 0.06	# : 0.04	h : 0.04	i : 0.02	! : 0.02	a : 0.02	
d : 0.18	b : 0.12	f : 0.12	" : 0.10	[ : 0.08	g : 0.08	c : 0.06	e : 0.06	# : 0.04	= : 0.04	h : 0.04	a : 0.02	i : 0.02	
d : 0.18	[ : 0.14	" : 0.10	b : 0.10	g : 0.10	c : 0.08	f : 0.06	# : 0.04	a : 0.04	h : 0.04	= : 0.02	i : 0.02	! : 0.02	e : 0.02	
d : 0.14	b : 0.12	" : 0.10	f : 0.10	[ : 0.10	c : 0.10	g : 0.08	! : 0.08	a : 0.04	h : 0.04	= : 0.02	i : 0.02	e : 0.02	
! : 0.14	[ : 0.14	b : 0.10	e : 0.08	f : 0.08	d : 0.08	g : 0.08	" : 0.08	c : 0.08	h : 0.04	= : 0.02	i : 0.02	a : 0.02	
d : 0.25	[ : 0.18	! : 0.12	e : 0.10	c : 0.10	f : 0.06	" : 0.04	g : 0.04	h : 0.04	= : 0.02	b : 0.02	
c : 0.31	d : 0.22	e : 0.10	f : 0.06	[ : 0.06	! : 0.06	a : 0.06	g : 0.04	h : 0.04	b : 0.02	
c : 0.37	d : 0.20	e : 0.10	b : 0.08	f : 0.06	[ : 0.06	o : 0.06	! : 0.02	g : 0.02	
c : 0.33	d : 0.20	e : 0.10	a : 0.08	b : 0.08	o : 0.08	f : 0.06	g : 0.02	l : 0.02	
m : 0.68	o : 0.10	c : 0.08	l : 0.08	b : 0.02	e : 0.02	
m : 0.70	l : 0.18	o : 0.10	
m : 0.70	l : 0.16	o : 0.10	c : 0.02	
m : 0.70	o : 0.10	l : 0.10	c : 0.04	d : 0.02	f : 0.02	
c : 0.35	d : 0.20	a : 0.12	e : 0.10	f : 0.06	b : 0.06	o : 0.04	m : 0.02	g : 0.02	
c : 0.35	d : 0.20	] : 0.14	e : 0.10	b : 0.08	f : 0.06	o : 0.02	g : 0.02	
c : 0.33	d : 0.27	e : 0.10	f : 0.08	b : 0.06	] : 0.04	g : 0.04	4 : 0.02	a : 0.02	2 : 0.02	
d : 0.27	] : 0.12	e : 0.10	2 : 0.10	f : 0.08	3 : 0.08	b : 0.06	g : 0.06	c : 0.06	= : 0.02	4 : 0.02	
] : 0.14	3 : 0.12	e : 0.10	d : 0.10	2 : 0.10	c : 0.10	f : 0.08	b : 0.08	g : 0.06	= : 0.02	4 : 0.02	i : 0.02	h : 0.02	
d : 0.14	3 : 0.12	c : 0.12	] : 0.10	b : 0.10	a : 0.08	f : 0.06	g : 0.06	= : 0.04	2 : 0.04	e : 0.04	4 : 0.02	i : 0.02	h : 0.02	
] : 0.14	d : 0.12	b : 0.10	g : 0.10	2 : 0.10	e : 0.08	c : 0.08	= : 0.06	a : 0.04	f : 0.04	3 : 0.04	h : 0.04	i : 0.02	
d : 0.14	b : 0.12	f : 0.12	2 : 0.12	g : 0.10	= : 0.08	e : 0.08	] : 0.06	h : 0.06	c : 0.04	i : 0.02	a : 0.02	
d : 0.12	g : 0.12	= : 0.10	f : 0.10	e : 0.10	c : 0.08	b : 0.08	2 : 0.08	h : 0.06	] : 0.06	4 : 0.02	i : 0.02	a : 0.02	
d : 0.16	g : 0.12	= : 0.10	f : 0.10	c : 0.10	e : 0.10	h : 0.06	] : 0.06	2 : 0.06	i : 0.04	b : 0.04	4 : 0.02	
c : 0.16	= : 0.12	d : 0.12	g : 0.10	f : 0.10	h : 0.08	b : 0.06	e : 0.06	i : 0.04	] : 0.04	4 : 0.02	a : 0.02	3 : 0.02	2 : 0.02	
g : 0.12	= : 0.12	c : 0.12	f : 0.10	] : 0.10	d : 0.10	h : 0.08	b : 0.04	i : 0.04	e : 0.04	3 : 0.04	4 : 0.02	2 : 0.02	a : 0.02	
c : 0.14	g : 0.12	= : 0.12	d : 0.12	e : 0.10	f : 0.08	] : 0.06	h : 0.06	i : 0.06	2 : 0.06	3 : 0.04	
] : 0.18	= : 0.12	e : 0.10	g : 0.08	d : 0.08	c : 0.08	h : 0.06	2 : 0.06	a : 0.04	i : 0.04	b : 0.04	4 : 0.04	f : 0.02	3 : 0.02	
b : 0.16	e : 0.14	= : 0.10	d : 0.10	c : 0.10	a : 0.08	g : 0.06	h : 0.04	i : 0.04	4 : 0.04	: : 0.02	f : 0.02	5 : 0.02	] : 0.02	2 : 0.02	

#score	575.4686963186522
#seq	48
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF305BNZ_LARP7_UTR_m3_run2.txt

#BEAR
bb22dddd:::::CCCCCC}GGGGGGG~~~~CCC}CCC::	chr7:111928580-111928812(+)$1	232	188	228	28.5399
nnnnnccc]ccc::DDDDYYGGGGGGGYYDDDDZZZEEEE	chr2:97535519-97535828(-)$1	309	211	251	30.4104

#otherMatches

#Seq PSSM
uccucccucaccacuccauguucaugccucccaaagcugu	chr7:111928580-111928812(+)$1	232	188	228	28.5399
AAUAGGUGAGCGAGGCCGGGCUUGCGUGAGGCUGGAGCCG	chr2:97535519-97535828(-)$1	309	211	251	30.4104

#DB
))..)))).....)))))).)))))))....))).)))..	chr7:111928580-111928812(+)$1	1	188	228	28.5399
.....))).)))..))))..)))))))..))))...))))	chr2:97535519-97535828(-)$1	1	211	251	30.4104

#PSSM
b : 0.50	n : 0.50	
b : 0.50	n : 0.50	
2 : 0.50	n : 0.50	
2 : 0.50	n : 0.50	
d : 0.50	n : 0.50	
d : 0.50	c : 0.50	
d : 0.50	c : 0.50	
d : 0.50	c : 0.50	
: : 0.50	] : 0.50	
: : 0.50	c : 0.50	
: : 0.50	c : 0.50	
: : 0.50	c : 0.50	
: : 1.00	
C : 0.50	: : 0.50	
C : 0.50	D : 0.50	
C : 0.50	D : 0.50	
C : 0.50	D : 0.50	
C : 0.50	D : 0.50	
C : 0.50	Y : 0.50	
} : 0.50	Y : 0.50	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
~ : 0.50	Y : 0.50	
~ : 0.50	Y : 0.50	
~ : 0.50	D : 0.50	
~ : 0.50	D : 0.50	
C : 0.50	D : 0.50	
C : 0.50	D : 0.50	
C : 0.50	Z : 0.50	
} : 0.50	Z : 0.50	
C : 0.50	Z : 0.50	
C : 0.50	E : 0.50	
C : 0.50	E : 0.50	
: : 0.50	E : 0.50	
: : 0.50	E : 0.50	

#score	58.95043855394999
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_transcript_m1_run2.txt

#BEAR
eeeeewwwwwwwwwwwwwweeeee	chr4:71067162-71067420(+)$1	258	105	129	21.9628
gggggggtttttttttttgggggg	chr22:36164272-36164522(-)$1	250	24	48	22.8252
beeeeeuuuuuuuuuuuueeeee]	chr12:56745180-56745450(-)$1	270	125	149	23.0497
+ddddvvvvvvvvvvvvvddddff	chr12:50196823-50197072(-)$1	249	160	184	21.8535
%%cccvvvvvvvvvvvvvccc666	chr11:129744448-129744724(-)$1	276	100	124	20.8662
ddddyyyyyyyyyyyyyyyydddd	chr1:231401133-231401414(+)$1	281	181	205	19.9590
dddcccwwwwwwwwwwwwwwccc]	chr6:47254176-47254471(-)$1	295	139	163	21.8249
gggggggtttttttttttgggggg	chr20:8377478-8377752(+)$1	274	65	89	22.8252
!!cccvvvvvvvvvvvvvccc22c	chr4:73979142-73979408(-)$1	266	62	86	23.7755
ccc[ccctttttttttttcccccc	chr2:128865387-128865635(+)$1	248	136	160	23.1112
"""ddddtttttttttttdddd22	chr12:6690201-6690456(-)$1	255	22	46	21.8816
======wwwwwwwwwwwwww====	chr8:87442788-87443090(+)$1	302	25	49	22.4236
hhhhhhuuuuuuuuuuuuhhhhhh	chr6:160449863-160450098(+)$1	235	206	230	21.8893
ffffffuuuuuuuuuuuuffffff	chr4:99955239-99955522(+)$1	283	18	42	22.6396
"""cccyyyyyyyyyyyyyyyycc	chr17:55423116-55423385(+)$1	269	84	108	20.8593
[ccc[bbtttttttttttbb]ccc	chr13:32982648-32982907(-)$1	259	105	129	22.0000
eeeeevvvvvvvvvvvvveeeee]	chr8:129025534-129025810(+)$1	276	95	119	23.1194
##ddddtttttttttttdddd444	chr1:235408037-235408298(-)$1	261	92	116	21.3860
======vvvvvvvvvvvvv=====	chr8:22261968-22262201(+)$1	233	204	228	23.8332
eeeeewwwwwwwwwwwwwweeeee	chr11:46404287-46404534(+)$1	247	153	177	21.9628
iiiiiiuuuuuuuuuuuuiiiiii	chr13:103289104-103289350(+)$1	246	156	180	24.1061
ddd[bbwwwwwwwwwwwwwwbb]d	chr3:42652743-42652987(+)$1	244	116	140	20.4269
fff[ccctttttttttttccc]ff	chr3:128454775-128455034(+)$1	259	153	177	22.9165
cc[ddddtttttttttttddddcc	chr7:23235334-23235615(+)$1	281	235	259	22.0241
======uuuuuuuuuuuu======	chr4:76695730-76695970(+)$1	240	131	155	24.2072
ee!!ccctttttttttttccc]ee	chr10:27292966-27293228(-)$1	262	126	150	23.2012
[eeeeewwwwwwwwwwwwwweeee	chr3:49059665-49059913(+)$1	248	90	114	21.7438
eeeeevvvvvvvvvvvvveeeee]	chr12:69651669-69651892(+)$1	223	15	39	23.1194
a!!bbvvvvvvvvvvvvvbb22a>	chr8:93921947-93922255(-)$1	308	134	158	21.9402
=======ttttttttttt======	chr4:39868459-39868771(-)$1	312	83	107	23.1546
ff!!ccctttttttttttccc22f	chr5:139875226-139875528(+)$1	302	61	85	22.8806
gggggguuuuuuuuuuuugggggg	chr11:2993510-2993758(-)$1	248	115	139	23.9534
ffffffuuuuuuuuuuuuffffff	chr17:3725960-3726229(-)$1	269	225	249	22.6396
eeeeccctttttttttttccc333	chr6:147649703-147649998(+)$1	295	252	276	23.3412
fffffvvvvvvvvvvvvvffffff	chr20:57564432-57564706(+)$1	274	101	125	22.4602
eeeeeyyyyyyyyyyyyyyyyeee	chr1:100756719-100756991(+)$1	272	141	165	20.8253
hhhhhwwwwwwwwwwwwwwhhhhh	chr3:179045225-179045513(+)$1	288	13	37	21.0533
dcccwwwwwwwwwwwwwwccc333	chr20:31600491-31600709(+)$1	218	151	175	22.0762
##ddddtttttttttttdddd444	chr1:23409556-23409809(+)$1	253	68	92	21.3860
!!eeeeettttttttttteeeee2	chr2:114691722-114691997(+)$1	275	48	72	22.3643
###ccctttttttttttcccccc]	chr2:242404971-242405230(+)$1	259	70	94	22.6441
d:ddddvvvvvvvvvvvvvdddd:	chr2:165656022-165656268(-)$1	246	48	72	20.2382
"""ddddtttttttttttddddff	chr16:30724380-30724622(+)$1	242	77	101	22.0302
hhhhhwwwwwwwwwwwwwwhhhhh	chr5:80074419-80074686(+)$1	267	98	122	21.0533
"eeeeeuuuuuuuuuuuueeeeec	chr1:211485946-211486195(+)$1	249	126	150	23.3439
fffffvvvvvvvvvvvvvffffff	chr2:177169142-177169403(+)$1	261	74	98	22.4602
gggggguuuuuuuuuuuugggggg	chr12:132427972-132428242(+)$1	270	119	143	23.9534
gg[cccyyyyyyyyyyyyyyyycc	chr4:56283863-56284133(+)$1	270	209	233	20.9473
ggggggyyyyyyyyyyyyyyyygg	chr1:146683951-146684223(-)$1	272	34	58	20.8351
eeeeewwwwwwwwwwwwwweeeee	chr1:207940641-207940891(+)$1	250	99	123	21.9628
$fffffftttttttttttffffff	chr1:154936266-154936525(-)$1	259	183	207	21.5333
!!dddduuuuuuuuuuuudddd]i	chr5:134125768-134126031(+)$1	263	102	126	23.3951
[eeeeeuuuuuuuuuuuueeeeec	chr8:52756998-52757260(-)$1	262	122	146	23.4179
iiiiivvvvvvvvvvvvviiiiii	chr2:191760425-191760663(+)$1	238	85	109	23.8198
hhhhhwwwwwwwwwwwwwwhhhhh	chr8:17798650-17798897(+)$1	247	183	207	21.0533
"""cccvvvvvvvvvvvvvccc33	chr12:6634538-6634787(+)$1	249	42	66	23.9112
ddddayyyyyyyyyyyyyyyya]d	chr2:28561196-28561486(+)$1	290	118	142	20.4102
e"""ccctttttttttttccc333	chrX:45606411-45606676(-)$1	265	192	216	23.2971
gggggggtttttttttttgggggg	chr8:129010307-129010610(+)$1	303	240	264	22.8252
ee[cccuuuuuuuuuuuuccceee	chr15:85189445-85189697(-)$1	252	181	205	24.0013
hhh[bbuuuuuuuuuuuubb]hhh	chr12:56716402-56716694(-)$1	292	194	218	22.0469
ggggggvvvvvvvvvvvvvggggg	chr7:40084815-40085081(+)$1	266	146	170	23.6376
ffffffuuuuuuuuuuuuffffff	chr12:110781820-110782077(+)$1	257	188	212	22.6396
[cccwwwwwwwwwwwwwwccc]bb	chr14:95660803-95661029(-)$1	226	60	84	21.5691
hh[cccuuuuuuuuuuuuccc22h	chr3:98490039-98490290(+)$1	251	104	128	23.5938
hhhhhhuuuuuuuuuuuuhhhhhh	chrX:27405349-27405654(-)$1	305	208	232	21.8893
fffffvvvvvvvvvvvvvffffff	chr8:90737804-90738059(-)$1	255	15	39	22.4602

#otherMatches

#Seq PSSM
CAUUGUCUACUAAAUCuaucaaug	chr4:71067162-71067420(+)$1	258	105	129	21.9628
GAUGUCAGUUUCAUACUAUGAUAU	chr22:36164272-36164522(-)$1	250	24	48	22.8252
ACUCUUCACAUAUUUACAGAGAGA	chr12:56745180-56745450(-)$1	270	125	149	23.0497
CAGCGGGAGACUUAUGAGCGCUGU	chr12:50196823-50197072(-)$1	249	160	184	21.8535
UUCCAUUAUUCUUUUCAUUGGCAU	chr11:129744448-129744724(-)$1	276	100	124	20.8662
GUGACUCUCUUGUUUAAUUUUCAC	chr1:231401133-231401414(+)$1	281	181	205	19.9590
GCUUGGAUUCCUUAGCACCACCAC	chr6:47254176-47254471(-)$1	295	139	163	21.8249
cuacuuacuauuuacuuuugagua	chr20:8377478-8377752(+)$1	274	65	89	22.8252
UUGAACAUCAUUGAAAGCUUCUUU	chr4:73979142-73979408(-)$1	266	62	86	23.7755
CCUACUAUCAUGCAAUAUUGGAGG	chr2:128865387-128865635(+)$1	248	136	160	23.1112
GCCAUACUAAAGACAAAUGUGUAA	chr12:6690201-6690456(-)$1	255	22	46	21.8816
UAUUUUUAGAAAAUUAUUAUAAAA	chr8:87442788-87443090(+)$1	302	25	49	22.4236
caguggugugauuuugguucacug	chr6:160449863-160450098(+)$1	235	206	230	21.8893
CUUGUUGGCUUGGUUUUAAACAAG	chr4:99955239-99955522(+)$1	283	18	42	22.6396
acuaaugccugacuuuauuccaau	chr17:55423116-55423385(+)$1	269	84	108	20.8593
guccucaguuuuuacagaugcgga	chr13:32982648-32982907(-)$1	259	105	129	22.0000
CUGUUUUUUUUUCCCCCUGGCAGA	chr8:129025534-129025810(+)$1	276	95	119	23.1194
UCAAAGUUCUUUCUCCCCUUUCUU	chr1:235408037-235408298(-)$1	261	92	116	21.3860
AGAGGCCUCAGCUUCACCUGCCUU	chr8:22261968-22262201(+)$1	233	204	228	23.8332
GCCUGGAAAAGUCUGAAGAUGGGC	chr11:46404287-46404534(+)$1	247	153	177	21.9628
UAAUCUAAAUUGUAAGGAAGAUUA	chr13:103289104-103289350(+)$1	246	156	180	24.1061
GUUGCUGCCCCUCCCACCAAAGAA	chr3:42652743-42652987(+)$1	244	116	140	20.4269
AAUGUCUUUACAUUUCAUAGAGGU	chr3:128454775-128455034(+)$1	259	153	177	22.9165
GAUGAGCUCUUAAUUACUGCUUUC	chr7:23235334-23235615(+)$1	281	235	259	22.0241
AAUGGUGCAAUCCAGAAAAUUGUU	chr4:76695730-76695970(+)$1	240	131	155	24.2072
gucuuucuagaugaauaugaauau	chr10:27292966-27293228(-)$1	262	126	150	23.2012
ccccUGACCCUUUCCCUCCGCAGG	chr3:49059665-49059913(+)$1	248	90	114	21.7438
GGUAAAACUUUUCUUAAAUUACCA	chr12:69651669-69651892(+)$1	223	15	39	23.1194
GUUGUUUGUCUUUCUUUUACUUCU	chr8:93921947-93922255(-)$1	308	134	158	21.9402
AAUUAAAUUAAUUUUCCCUUUAAU	chr4:39868459-39868771(-)$1	312	83	107	23.1546
UAAUUUAAAACCUUAAAAUAAUAU	chr5:139875226-139875528(+)$1	302	61	85	22.8806
uauccuuuuuuuccuguuggggua	chr11:2993510-2993758(-)$1	248	115	139	23.9534
GAAGGUCUUUGUAUUACUACUUUU	chr17:3725960-3726229(-)$1	269	225	249	22.6396
AAAUCAUUGGGAGUUUUUGUGUUC	chr6:147649703-147649998(+)$1	295	252	276	23.3412
GUGUCCUAGCUUAUUUCUGACGCA	chr20:57564432-57564706(+)$1	274	101	125	22.4602
UGGGCUUGACAUUAACUCUCUGCC	chr1:100756719-100756991(+)$1	272	141	165	20.8253
UAGUUCUGUAUAACUUUCCAAUUG	chr3:179045225-179045513(+)$1	288	13	37	21.0533
CACCUGAAAUUCAUUGCUGGUUUC	chr20:31600491-31600709(+)$1	218	151	175	22.0762
AAGGUAUAUGUGCAGCCUGCCAAU	chr1:23409556-23409809(+)$1	253	68	92	21.3860
ACUAGuuuuuuuuuuuucgauuaa	chr2:114691722-114691997(+)$1	275	48	72	22.3643
UCUCACUCUUGCUUAACGUGCCUG	chr2:242404971-242405230(+)$1	259	70	94	22.6441
gcuuucuuuauaaugucuugaaau	chr2:165656022-165656268(-)$1	246	48	72	20.2382
UUUAGCAUGUCUUCCCUUUGCUCU	chr16:30724380-30724622(+)$1	242	77	101	22.0302
GUGUUCUUUCCCCUCUUCUAGCAC	chr5:80074419-80074686(+)$1	267	98	122	21.0533
UAUGGUAAAGAUUUUCAAGCUAUU	chr1:211485946-211486195(+)$1	249	126	150	23.3439
AAUGAUACCUAACACUUUUCAUUU	chr2:177169142-177169403(+)$1	261	74	98	22.4602
UCCCCUGGAAGGCAGUGAAGGGGA	chr12:132427972-132428242(+)$1	270	119	143	23.9534
UUCAAGCUCUUACAUUAACAUUCU	chr4:56283863-56284133(+)$1	270	209	233	20.9473
UAAGUCUGCAAAAAAAACAAAUGA	chr1:146683951-146684223(-)$1	272	34	58	20.8351
GUGCUUUUCCAGGGUUCUUAGCAC	chr1:207940641-207940891(+)$1	250	99	123	21.9628
CUUGCCCAUCAUCUCUGCGGGCAG	chr1:154936266-154936525(-)$1	259	183	207	21.5333
GGCUGUUUUCUGAAUUUUACAGGU	chr5:134125768-134126031(+)$1	263	102	126	23.3951
GUUUGUAUUUAUCGUCUGGCAAGU	chr8:52756998-52757260(-)$1	262	122	146	23.4179
UUAAAACAAAAUUGCAUCUUUGAA	chr2:191760425-191760663(+)$1	238	85	109	23.8198
UCAUAAUAUAAAAUGACGGUAUGA	chr8:17798650-17798897(+)$1	247	183	207	21.0533
GAAAGCCUCUCAAGACCCUGCUGU	chr12:6634538-6634787(+)$1	249	42	66	23.9112
AGGGCUUAUUUCAAAACCUUUGUC	chr2:28561196-28561486(+)$1	290	118	142	20.4102
GAUCCUGUCUUUCGUAAUCAGCAG	chrX:45606411-45606676(-)$1	265	192	216	23.2971
ugggagauuuaacuccucucuccu	chr8:129010307-129010610(+)$1	303	240	264	22.8252
UGGCCGUCUUCUCCACAUUGGCAC	chr15:85189445-85189697(-)$1	252	181	205	24.0013
UAUGACCUGAUGGCUACUGUGGUA	chr12:56716402-56716694(-)$1	292	194	218	22.0469
UAAACAGAAUUAAAUUACAUGUUU	chr7:40084815-40085081(+)$1	266	146	170	23.6376
CCACUGUAAUUCGUGGGUUAGUGG	chr12:110781820-110782077(+)$1	257	188	212	22.6396
GGUGGUACCAAUUCAAAACAUGUG	chr14:95660803-95661029(-)$1	226	60	84	21.5691
UGUGGCUUCUCCUUCCUUGCCUCU	chr3:98490039-98490290(+)$1	251	104	128	23.5938
acuguucuccauccuaucagcagu	chrX:27405349-27405654(-)$1	305	208	232	21.8893
CAGAUUCUGUAUUUUCCUAUCUGG	chr8:90737804-90738059(-)$1	255	15	39	22.4602

#DB
(((((..............)))))	chr4:71067162-71067420(+)$1	1	105	129	21.9628
(((((((...........))))))	chr22:36164272-36164522(-)$1	1	24	48	22.8252
((((((............))))).	chr12:56745180-56745450(-)$1	1	125	149	23.0497
.((((.............))))))	chr12:50196823-50197072(-)$1	1	160	184	21.8535
..(((.............)))...	chr11:129744448-129744724(-)$1	1	100	124	20.8662
((((................))))	chr1:231401133-231401414(+)$1	1	181	205	19.9590
((((((..............))).	chr6:47254176-47254471(-)$1	1	139	163	21.8249
(((((((...........))))))	chr20:8377478-8377752(+)$1	1	65	89	22.8252
..(((.............)))..)	chr4:73979142-73979408(-)$1	1	62	86	23.7755
(((.(((...........))))))	chr2:128865387-128865635(+)$1	1	136	160	23.1112
...((((...........))))..	chr12:6690201-6690456(-)$1	1	22	46	21.8816
((((((..............))))	chr8:87442788-87443090(+)$1	1	25	49	22.4236
((((((............))))))	chr6:160449863-160450098(+)$1	1	206	230	21.8893
((((((............))))))	chr4:99955239-99955522(+)$1	1	18	42	22.6396
...(((................))	chr17:55423116-55423385(+)$1	1	84	108	20.8593
.(((.((...........)).)))	chr13:32982648-32982907(-)$1	1	105	129	22.0000
(((((.............))))).	chr8:129025534-129025810(+)$1	1	95	119	23.1194
..((((...........))))...	chr1:235408037-235408298(-)$1	1	92	116	21.3860
((((((.............)))))	chr8:22261968-22262201(+)$1	1	204	228	23.8332
(((((..............)))))	chr11:46404287-46404534(+)$1	1	153	177	21.9628
((((((............))))))	chr13:103289104-103289350(+)$1	1	156	180	24.1061
(((.((..............)).)	chr3:42652743-42652987(+)$1	1	116	140	20.4269
(((.(((...........))).))	chr3:128454775-128455034(+)$1	1	153	177	22.9165
((.((((...........))))))	chr7:23235334-23235615(+)$1	1	235	259	22.0241
((((((............))))))	chr4:76695730-76695970(+)$1	1	131	155	24.2072
((..(((...........))).))	chr10:27292966-27293228(-)$1	1	126	150	23.2012
.(((((..............))))	chr3:49059665-49059913(+)$1	1	90	114	21.7438
(((((.............))))).	chr12:69651669-69651892(+)$1	1	15	39	23.1194
(..((.............))..).	chr8:93921947-93922255(-)$1	1	134	158	21.9402
(((((((...........))))))	chr4:39868459-39868771(-)$1	1	83	107	23.1546
((..(((...........)))..)	chr5:139875226-139875528(+)$1	1	61	85	22.8806
((((((............))))))	chr11:2993510-2993758(-)$1	1	115	139	23.9534
((((((............))))))	chr17:3725960-3726229(-)$1	1	225	249	22.6396
(((((((...........)))...	chr6:147649703-147649998(+)$1	1	252	276	23.3412
(((((.............))))))	chr20:57564432-57564706(+)$1	1	101	125	22.4602
(((((................)))	chr1:100756719-100756991(+)$1	1	141	165	20.8253
(((((..............)))))	chr3:179045225-179045513(+)$1	1	13	37	21.0533
((((..............)))...	chr20:31600491-31600709(+)$1	1	151	175	22.0762
..((((...........))))...	chr1:23409556-23409809(+)$1	1	68	92	21.3860
..(((((...........))))).	chr2:114691722-114691997(+)$1	1	48	72	22.3643
...(((...........)))))).	chr2:242404971-242405230(+)$1	1	70	94	22.6441
).((((.............)))).	chr2:165656022-165656268(-)$1	1	48	72	20.2382
...((((...........))))))	chr16:30724380-30724622(+)$1	1	77	101	22.0302
(((((..............)))))	chr5:80074419-80074686(+)$1	1	98	122	21.0533
.(((((............))))))	chr1:211485946-211486195(+)$1	1	126	150	23.3439
(((((.............))))))	chr2:177169142-177169403(+)$1	1	74	98	22.4602
((((((............))))))	chr12:132427972-132428242(+)$1	1	119	143	23.9534
((.(((................))	chr4:56283863-56284133(+)$1	1	209	233	20.9473
((((((................))	chr1:146683951-146684223(-)$1	1	34	58	20.8351
(((((..............)))))	chr1:207940641-207940891(+)$1	1	99	123	21.9628
.((((((...........))))))	chr1:154936266-154936525(-)$1	1	183	207	21.5333
..((((............)))).)	chr5:134125768-134126031(+)$1	1	102	126	23.3951
.(((((............))))))	chr8:52756998-52757260(-)$1	1	122	146	23.4179
(((((.............))))))	chr2:191760425-191760663(+)$1	1	85	109	23.8198
(((((..............)))))	chr8:17798650-17798897(+)$1	1	183	207	21.0533
...(((.............)))..	chr12:6634538-6634787(+)$1	1	42	66	23.9112
(((((................).)	chr2:28561196-28561486(+)$1	1	118	142	20.4102
(...(((...........)))...	chrX:45606411-45606676(-)$1	1	192	216	23.2971
(((((((...........))))))	chr8:129010307-129010610(+)$1	1	240	264	22.8252
((.(((............))))))	chr15:85189445-85189697(-)$1	1	181	205	24.0013
(((.((............)).)))	chr12:56716402-56716694(-)$1	1	194	218	22.0469
((((((.............)))))	chr7:40084815-40085081(+)$1	1	146	170	23.6376
((((((............))))))	chr12:110781820-110782077(+)$1	1	188	212	22.6396
.(((..............))).))	chr14:95660803-95661029(-)$1	1	60	84	21.5691
((.(((............)))..)	chr3:98490039-98490290(+)$1	1	104	128	23.5938
((((((............))))))	chrX:27405349-27405654(-)$1	1	208	232	21.8893
(((((.............))))))	chr8:90737804-90738059(-)$1	1	15	39	22.4602

#PSSM
e : 0.14	g : 0.11	f : 0.11	h : 0.10	d : 0.08	" : 0.07	= : 0.05	[ : 0.05	! : 0.04	# : 0.04	c : 0.02	i : 0.02	b : 0.01	+ : 0.01	% : 0.01	a : 0.01	$ : 0.01	
e : 0.19	f : 0.13	g : 0.11	h : 0.10	d : 0.07	c : 0.07	" : 0.07	! : 0.05	= : 0.05	# : 0.04	i : 0.02	% : 0.01	: : 0.01	
e : 0.17	d : 0.13	f : 0.11	g : 0.10	c : 0.08	h : 0.08	" : 0.07	= : 0.05	[ : 0.05	! : 0.04	i : 0.02	# : 0.01	
e : 0.17	c : 0.17	d : 0.14	g : 0.10	f : 0.10	h : 0.07	[ : 0.05	= : 0.05	i : 0.02	! : 0.02	b : 0.01	" : 0.01	
c : 0.22	e : 0.16	d : 0.11	g : 0.10	f : 0.10	h : 0.07	= : 0.05	b : 0.04	i : 0.02	w : 0.02	y : 0.01	[ : 0.01	a : 0.01	
c : 0.19	v : 0.14	w : 0.11	g : 0.10	d : 0.10	e : 0.07	= : 0.05	f : 0.05	y : 0.04	b : 0.04	h : 0.02	i : 0.01	
u : 0.23	v : 0.20	w : 0.17	y : 0.08	c : 0.08	g : 0.04	d : 0.04	t : 0.04	b : 0.01	= : 0.01	e : 0.01	f : 0.01	
t : 0.28	u : 0.23	v : 0.20	w : 0.17	y : 0.08	
t : 0.28	u : 0.23	v : 0.20	w : 0.17	y : 0.08	
t : 0.28	u : 0.23	v : 0.20	w : 0.17	y : 0.08	
t : 0.28	u : 0.23	v : 0.20	w : 0.17	y : 0.08	
t : 0.28	u : 0.23	v : 0.20	w : 0.17	y : 0.08	
t : 0.28	u : 0.23	v : 0.20	w : 0.17	y : 0.08	
t : 0.28	u : 0.23	v : 0.20	w : 0.17	y : 0.08	
t : 0.28	u : 0.23	v : 0.20	w : 0.17	y : 0.08	
t : 0.28	u : 0.23	v : 0.20	w : 0.17	y : 0.08	
t : 0.28	u : 0.23	v : 0.20	w : 0.17	y : 0.08	
t : 0.23	u : 0.23	v : 0.20	w : 0.17	y : 0.08	d : 0.02	c : 0.01	
c : 0.19	w : 0.14	d : 0.10	f : 0.10	e : 0.08	y : 0.08	g : 0.07	v : 0.05	b : 0.04	h : 0.02	i : 0.02	= : 0.02	
c : 0.20	e : 0.13	d : 0.11	f : 0.10	g : 0.08	y : 0.08	h : 0.07	w : 0.05	b : 0.04	= : 0.04	i : 0.02	
c : 0.22	e : 0.14	d : 0.13	f : 0.10	g : 0.08	h : 0.07	y : 0.07	= : 0.05	] : 0.02	i : 0.02	b : 0.01	2 : 0.01	
e : 0.17	d : 0.10	f : 0.10	g : 0.08	h : 0.08	c : 0.07	2 : 0.05	= : 0.05	y : 0.04	] : 0.04	3 : 0.04	4 : 0.02	i : 0.02	6 : 0.01	b : 0.01	a : 0.01	
e : 0.19	f : 0.14	g : 0.10	c : 0.10	h : 0.08	2 : 0.05	= : 0.05	3 : 0.05	] : 0.04	d : 0.02	4 : 0.02	i : 0.02	6 : 0.01	a : 0.01	b : 0.01	
f : 0.16	c : 0.11	e : 0.10	g : 0.10	h : 0.10	] : 0.07	= : 0.05	3 : 0.05	d : 0.04	i : 0.04	2 : 0.02	4 : 0.02	6 : 0.01	> : 0.01	: : 0.01	b : 0.01	

#score	1498.8404510566265
#seq	67
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF233ZXV_DHX30_transcript_m2_run1.txt

#BEAR
fffffpppppppfffff	chrM:2976-3182(+)$1	206	15	32	13.4168
eeeeepppppppeeeee	chrM:8097-8321(+)$1	224	179	196	15.4061
gggggpppppppggggg	chrM:1264-1468(+)$1	204	132	149	14.5405
eeeeepppppppeeeee	chrM:4339-4544(+)$1	205	86	103	15.4061
fffffpppppppfffff	chrM:2970-3176(+)$1	206	21	38	13.4168
eeeeepppppppeeeee	chrM:3135-3378(+)$1	243	145	162	15.4061
gggggpppppppggggg	chrM:1285-1487(+)$1	202	111	128	14.5405
ggggapppppppa]ggg	chr14:105994973-105995254(+)$1	281	189	206	14.2496
d[cccpppppppcccdd	chr11:2151012-2151216(-)$1	204	156	173	13.5721
gggbbpppppppbb]gg	chr8:32871236-32871477(+)$1	241	76	93	13.3522
eeeeepppppppeeeee	chrM:2652-2861(+)$1	209	9	26	15.4061
eeeeepppppppeeeee	chrM:4352-4560(+)$1	208	73	90	15.4061
eeeeepppppppeeeee	chrM:15830-16054(+)$1	224	153	170	15.4061
gggggpppppppggggg	chr11:62285830-62286077(-)$1	247	102	119	14.5405
eeeeepppppppeeeee	chrM:2528-2733(+)$1	205	133	150	15.4061
d[cccpppppppcccdd	chr11:2150858-2151063(-)$1	205	3	20	13.5721
fffffpppppppfffff	chr5:134262622-134262877(+)$1	255	114	131	13.4168
!!cccpppppppccc22	chr5:134263361-134263582(+)$1	221	7	24	13.6525
eeeeepppppppeeeee	chrM:2533-2738(+)$1	205	128	145	15.4061
eeeeepppppppeeeee	chr1:20811982-20812235(-)$1	253	16	33	15.4061
eeeeepppppppeeeee	chrM:2578-2791(+)$1	213	83	100	15.4061
eeeeepppppppeeeee	chrM:2603-2805(+)$1	202	58	75	15.4061
eee[apppppppa]eee	chrM:14184-14399(-)$1	215	33	50	14.7733
eeeeepppppppeeeee	chrM:2591-2794(+)$1	203	70	87	15.4061
fffffpppppppfffff	chr19:45981755-45981961(-)$1	206	44	61	13.4168
eeeeepppppppeeeee	chrM:2552-2761(+)$1	209	109	126	15.4061
"""bbpppppppbb333	chrM:2884-3087(+)$1	203	71	88	12.9317
c!!bbpppppppbb444	chr11:618790-619005(-)$1	215	70	87	12.9902
eeeeepppppppeeeee	chrM:2566-2774(+)$1	208	95	112	15.4061
gggggpppppppggggg	chrM:1268-1479(+)$1	211	128	145	14.5405
bbcccpppppppccc]b	chr21:46935279-46935534(-)$1	255	158	175	12.7212
c!!bbpppppppbb333	chr11:2151067-2151284(-)$1	217	89	106	13.2273
f!!bbpppppppbb444	chr17:22023635-22023929(+)$1	294	88	105	13.0194
!ddddpppppppdddd2	chr1:569791-570082(-)$1	291	44	61	13.2276
gggggpppppppggggg	chrM:1259-1464(+)$1	205	137	154	14.5405
gggggpppppppggggg	chrM:1250-1453(+)$1	203	146	163	14.5405
:ddddpppppppdddde	chr19:45981761-45981975(-)$1	214	91	108	12.3879
gggggpppppppggggg	chrM:1244-1448(+)$1	204	152	169	14.5405
gggggpppppppggggg	chrM:1279-1485(+)$1	206	117	134	14.5405
eeeeepppppppeeeee	chr17:19504519-19504775(+)$1	256	61	78	15.4061
!ddddpppppppdddd2	chr22:38054743-38055036(+)$1	293	204	221	13.2276
##cccpppppppccc44	chrM:12691-12902(+)$1	211	132	149	13.5598
gggggpppppppggggg	chrM:1291-1500(+)$1	209	105	122	14.5405
eeeeepppppppeeeee	chrM:4319-4538(+)$1	219	106	123	15.4061
eee[apppppppa]eee	chrM:14158-14384(-)$1	226	18	35	14.7733
eeeeepppppppeeeee	chrM:8092-8297(+)$1	205	184	201	15.4061
f[cccpppppppccc22	chrX:20284739-20285011(-)$1	272	38	55	13.5412
eeeeepppppppeeeee	chrM:2538-2745(+)$1	207	123	140	15.4061
eeeeepppppppeeeee	chrM:2574-2778(+)$1	204	87	104	15.4061
eeeeepppppppeeeee	chr6:62284028-62284301(+)$1	273	155	172	15.4061
##cccpppppppccc44	chrM:12751-12970(+)$1	219	72	89	13.5598
eeeeepppppppeeeee	chr17:2593086-2593349(-)$1	263	52	69	15.4061
eeeeepppppppeeeee	chrM:2519-2728(+)$1	209	142	159	15.4061
eeeeepppppppeeeee	chr11:10529716-10529951(-)$1	235	205	222	15.4061
eeeeepppppppeeeee	chrM:4344-4552(+)$1	208	81	98	15.4061
eddddpppppppddddB	chr8:100507998-100508253(+)$1	255	110	127	12.3731
gggggpppppppggggg	chrM:1253-1459(+)$1	206	143	160	14.5405
gggggpppppppggggg	chrM:1248-1450(+)$1	202	148	165	14.5405
gggggpppppppggggg	chrM:1232-1444(+)$1	212	164	181	14.5405
gggggpppppppggggg	chrM:1300-1504(+)$1	204	96	113	14.5405
gggggpppppppggggg	chr5:79946940-79947195(-)$1	255	53	70	14.5405
eee[apppppppa]eee	chrM:14201-14404(-)$1	203	38	55	14.7733
gggggpppppppggggg	chrM:1316-1531(+)$1	215	80	97	14.5405
"""bbpppppppbb333	chrM:2891-3113(+)$1	222	64	81	12.9317
eeeeepppppppeeeee	chrM:2545-2752(+)$1	207	116	133	15.4061
c!!bbpppppppbb444	chr11:618786-618990(-)$1	204	55	72	12.9902
[ddddpppppppddddc	chr2:207471541-207471764(+)$1	223	32	49	13.2608
gggggpppppppggggg	chrM:1227-1432(+)$1	205	169	186	14.5405

#otherMatches

#Seq PSSM
AUGUUGGAUCAGGACAU	chrM:2976-3182(+)$1	206	15	32	13.4168
CUCUACCCCCUCUAGAG	chrM:8097-8321(+)$1	224	179	196	15.4061
CCUUAUGAAACUUAAGG	chrM:1264-1468(+)$1	204	132	149	14.5405
UCGGGCCCAUACCCCGA	chrM:4339-4544(+)$1	205	86	103	15.4061
AUGUUGGAUCAGGACAU	chrM:2970-3176(+)$1	206	21	38	13.4168
agagguucaauuccucu	chrM:3135-3378(+)$1	243	145	162	15.4061
CCUUAUGAAACUUAAGG	chrM:1285-1487(+)$1	202	111	128	14.5405
cggccgACCAUGGUGCU	chr14:105994973-105995254(+)$1	281	189	206	14.2496
GAGGUUUACCUCGCCCC	chr11:2151012-2151216(-)$1	204	156	173	13.5721
AAUGCUGGAGCCGCUAU	chr8:32871236-32871477(+)$1	241	76	93	13.3522
uuacuuuuaaccaguga	chrM:2652-2861(+)$1	209	9	26	15.4061
UCGGGCCCAUACCCCGA	chrM:4352-4560(+)$1	208	73	90	15.4061
UUAGCACCCAAAGCUAA	chrM:15830-16054(+)$1	224	153	170	15.4061
ACUUGAAAGGACCAAGU	chr11:62285830-62286077(-)$1	247	102	119	14.5405
uuacuuuuaaccaguga	chrM:2528-2733(+)$1	205	133	150	15.4061
GAGGUUUACCUCGCCCC	chr11:2150858-2151063(-)$1	205	3	20	13.5721
UGCUAGGCAGAAUAGUA	chr5:134262622-134262877(+)$1	255	114	131	13.4168
UAUAAAAUAUGAUUAGU	chr5:134263361-134263582(+)$1	221	7	24	13.6525
uuacuuuuaaccaguga	chrM:2533-2738(+)$1	205	128	145	15.4061
AGGGACGUCUCCUCCCU	chr1:20811982-20812235(-)$1	253	16	33	15.4061
uuacuuuuaaccaguga	chrM:2578-2791(+)$1	213	83	100	15.4061
uuacuuuuaaccaguga	chrM:2603-2805(+)$1	202	58	75	15.4061
GCUGUGGGUGAAAGAGU	chrM:14184-14399(-)$1	215	33	50	14.7733
uuacuuuuaaccaguga	chrM:2591-2794(+)$1	203	70	87	15.4061
gcaggcuucaaaccugu	chr19:45981755-45981961(-)$1	206	44	61	13.4168
uuacuuuuaaccaguga	chrM:2552-2761(+)$1	209	109	126	15.4061
CUAGAGUCCAUAUCAAC	chrM:2884-3087(+)$1	203	71	88	12.9317
ACCCCAAAGCCAGGAAC	chr11:618790-619005(-)$1	215	70	87	12.9902
uuacuuuuaaccaguga	chrM:2566-2774(+)$1	208	95	112	15.4061
CCUUAUGAAACUUAAGG	chrM:1268-1479(+)$1	211	128	145	14.5405
CAUGCUGUCCCUGCACU	chr21:46935279-46935534(-)$1	255	158	175	12.7212
UGAGCCCACAGAGCAGG	chr11:2151067-2151284(-)$1	217	89	106	13.2273
ACAGUAGCAUUAACGAC	chr17:22023635-22023929(+)$1	294	88	105	13.0194
CGAAGAAAAAAACUUCU	chr1:569791-570082(-)$1	291	44	61	13.2276
CCUUAUGAAACUUAAGG	chrM:1259-1464(+)$1	205	137	154	14.5405
CCUUAUGAAACUUAAGG	chrM:1250-1453(+)$1	203	146	163	14.5405
agugguucaauuccacc	chr19:45981761-45981975(-)$1	214	91	108	12.3879
CCUUAUGAAACUUAAGG	chrM:1244-1448(+)$1	204	152	169	14.5405
CCUUAUGAAACUUAAGG	chrM:1279-1485(+)$1	206	117	134	14.5405
UUACUUUUAAUCAGUGA	chr17:19504519-19504775(+)$1	256	61	78	15.4061
GGCUCUGUUUGUGAGCA	chr22:38054743-38055036(+)$1	293	204	221	13.2276
GAUGCCAACACAGCAGC	chrM:12691-12902(+)$1	211	132	149	13.5598
CCUUAUGAAACUUAAGG	chrM:1291-1500(+)$1	209	105	122	14.5405
UCGGGCCCAUACCCCGA	chrM:4319-4538(+)$1	219	106	123	15.4061
GCUGUGGGUGAAAGAGU	chrM:14158-14384(-)$1	226	18	35	14.7733
CUCUACCCCCUCUAGAG	chrM:8092-8297(+)$1	205	184	201	15.4061
CGGGCGUCUCUGGCCAG	chrX:20284739-20285011(-)$1	272	38	55	13.5412
uuacuuuuaaccaguga	chrM:2538-2745(+)$1	207	123	140	15.4061
uuacuuuuaaccaguga	chrM:2574-2778(+)$1	204	87	104	15.4061
CGUGCAAAGGUAGCAUG	chr6:62284028-62284301(+)$1	273	155	172	15.4061
GAUGCCAACACAGCAGC	chrM:12751-12970(+)$1	219	72	89	13.5598
CGCCGUUGUGACUGGCG	chr17:2593086-2593349(-)$1	263	52	69	15.4061
uuacuuuuaaccaguga	chrM:2519-2728(+)$1	209	142	159	15.4061
uuacuuucaaccaguga	chr11:10529716-10529951(-)$1	235	205	222	15.4061
UCGGGCCCAUACCCCGA	chrM:4344-4552(+)$1	208	81	98	15.4061
AGGCGGUUGAGGCGUCU	chr8:100507998-100508253(+)$1	255	110	127	12.3731
CCUUAUGAAACUUAAGG	chrM:1253-1459(+)$1	206	143	160	14.5405
CCUUAUGAAACUUAAGG	chrM:1248-1450(+)$1	202	148	165	14.5405
CCUUAUGAAACUUAAGG	chrM:1232-1444(+)$1	212	164	181	14.5405
CCUUAUGAAACUUAAGG	chrM:1300-1504(+)$1	204	96	113	14.5405
CCUUAUGAAAUUUAAGG	chr5:79946940-79947195(-)$1	255	53	70	14.5405
GCUGUGGGUGAAAGAGU	chrM:14201-14404(-)$1	203	38	55	14.7733
CCUUAUGAAACUUAAGG	chrM:1316-1531(+)$1	215	80	97	14.5405
CUAGAGUCCAUAUCAAC	chrM:2891-3113(+)$1	222	64	81	12.9317
uuacuuuuaaccaguga	chrM:2545-2752(+)$1	207	116	133	15.4061
ACCCCAAAGCCAGGAAC	chr11:618786-618990(-)$1	204	55	72	12.9902
UGGUGGUGGUAACACUU	chr2:207471541-207471764(+)$1	223	32	49	13.2608
CCUUAUGAAACUUAAGG	chrM:1227-1432(+)$1	205	169	186	14.5405

#DB
(((((.......)))))	chrM:2976-3182(+)$1	1	15	32	13.4168
(((((.......)))))	chrM:8097-8321(+)$1	1	179	196	15.4061
(((((.......)))))	chrM:1264-1468(+)$1	1	132	149	14.5405
(((((.......)))))	chrM:4339-4544(+)$1	1	86	103	15.4061
(((((.......)))))	chrM:2970-3176(+)$1	1	21	38	13.4168
(((((.......)))))	chrM:3135-3378(+)$1	1	145	162	15.4061
(((((.......)))))	chrM:1285-1487(+)$1	1	111	128	14.5405
(((((.......).)))	chr14:105994973-105995254(+)$1	1	189	206	14.2496
(.(((.......)))))	chr11:2151012-2151216(-)$1	1	156	173	13.5721
(((((.......)).))	chr8:32871236-32871477(+)$1	1	76	93	13.3522
(((((.......)))))	chrM:2652-2861(+)$1	1	9	26	15.4061
(((((.......)))))	chrM:4352-4560(+)$1	1	73	90	15.4061
(((((.......)))))	chrM:15830-16054(+)$1	1	153	170	15.4061
(((((.......)))))	chr11:62285830-62286077(-)$1	1	102	119	14.5405
(((((.......)))))	chrM:2528-2733(+)$1	1	133	150	15.4061
(.(((.......)))))	chr11:2150858-2151063(-)$1	1	3	20	13.5721
(((((.......)))))	chr5:134262622-134262877(+)$1	1	114	131	13.4168
..(((.......)))..	chr5:134263361-134263582(+)$1	1	7	24	13.6525
(((((.......)))))	chrM:2533-2738(+)$1	1	128	145	15.4061
(((((.......)))))	chr1:20811982-20812235(-)$1	1	16	33	15.4061
(((((.......)))))	chrM:2578-2791(+)$1	1	83	100	15.4061
(((((.......)))))	chrM:2603-2805(+)$1	1	58	75	15.4061
(((.(.......).)))	chrM:14184-14399(-)$1	1	33	50	14.7733
(((((.......)))))	chrM:2591-2794(+)$1	1	70	87	15.4061
(((((.......)))))	chr19:45981755-45981961(-)$1	1	44	61	13.4168
(((((.......)))))	chrM:2552-2761(+)$1	1	109	126	15.4061
...((.......))...	chrM:2884-3087(+)$1	1	71	88	12.9317
(..((.......))...	chr11:618790-619005(-)$1	1	70	87	12.9902
(((((.......)))))	chrM:2566-2774(+)$1	1	95	112	15.4061
(((((.......)))))	chrM:1268-1479(+)$1	1	128	145	14.5405
(((((.......))).)	chr21:46935279-46935534(-)$1	1	158	175	12.7212
(..((.......))...	chr11:2151067-2151284(-)$1	1	89	106	13.2273
(..((.......))...	chr17:22023635-22023929(+)$1	1	88	105	13.0194
.((((.......)))).	chr1:569791-570082(-)$1	1	44	61	13.2276
(((((.......)))))	chrM:1259-1464(+)$1	1	137	154	14.5405
(((((.......)))))	chrM:1250-1453(+)$1	1	146	163	14.5405
.((((.......))))(	chr19:45981761-45981975(-)$1	1	91	108	12.3879
(((((.......)))))	chrM:1244-1448(+)$1	1	152	169	14.5405
(((((.......)))))	chrM:1279-1485(+)$1	1	117	134	14.5405
(((((.......)))))	chr17:19504519-19504775(+)$1	1	61	78	15.4061
.((((.......)))).	chr22:38054743-38055036(+)$1	1	204	221	13.2276
..(((.......)))..	chrM:12691-12902(+)$1	1	132	149	13.5598
(((((.......)))))	chrM:1291-1500(+)$1	1	105	122	14.5405
(((((.......)))))	chrM:4319-4538(+)$1	1	106	123	15.4061
(((.(.......).)))	chrM:14158-14384(-)$1	1	18	35	14.7733
(((((.......)))))	chrM:8092-8297(+)$1	1	184	201	15.4061
(.(((.......)))..	chrX:20284739-20285011(-)$1	1	38	55	13.5412
(((((.......)))))	chrM:2538-2745(+)$1	1	123	140	15.4061
(((((.......)))))	chrM:2574-2778(+)$1	1	87	104	15.4061
(((((.......)))))	chr6:62284028-62284301(+)$1	1	155	172	15.4061
..(((.......)))..	chrM:12751-12970(+)$1	1	72	89	13.5598
(((((.......)))))	chr17:2593086-2593349(-)$1	1	52	69	15.4061
(((((.......)))))	chrM:2519-2728(+)$1	1	142	159	15.4061
(((((.......)))))	chr11:10529716-10529951(-)$1	1	205	222	15.4061
(((((.......)))))	chrM:4344-4552(+)$1	1	81	98	15.4061
)((((.......)))))	chr8:100507998-100508253(+)$1	1	110	127	12.3731
(((((.......)))))	chrM:1253-1459(+)$1	1	143	160	14.5405
(((((.......)))))	chrM:1248-1450(+)$1	1	148	165	14.5405
(((((.......)))))	chrM:1232-1444(+)$1	1	164	181	14.5405
(((((.......)))))	chrM:1300-1504(+)$1	1	96	113	14.5405
(((((.......)))))	chr5:79946940-79947195(-)$1	1	53	70	14.5405
(((.(.......).)))	chrM:14201-14404(-)$1	1	38	55	14.7733
(((((.......)))))	chrM:1316-1531(+)$1	1	80	97	14.5405
...((.......))...	chrM:2891-3113(+)$1	1	64	81	12.9317
(((((.......)))))	chrM:2545-2752(+)$1	1	116	133	15.4061
(..((.......))...	chr11:618786-618990(-)$1	1	55	72	12.9902
.((((.......)))))	chr2:207471541-207471764(+)$1	1	32	49	13.2608
(((((.......)))))	chrM:1227-1432(+)$1	1	169	186	14.5405

#PSSM
e : 0.42	g : 0.26	f : 0.08	! : 0.04	c : 0.04	d : 0.02	" : 0.02	# : 0.02	b : 0.01	: : 0.01	[ : 0.01	
e : 0.41	g : 0.26	! : 0.07	d : 0.07	f : 0.05	[ : 0.04	" : 0.02	# : 0.02	b : 0.01	
e : 0.41	g : 0.26	c : 0.10	d : 0.07	f : 0.05	! : 0.05	" : 0.02	
e : 0.36	g : 0.25	c : 0.10	b : 0.10	d : 0.07	f : 0.05	[ : 0.04	
e : 0.36	g : 0.23	c : 0.10	b : 0.10	d : 0.07	f : 0.05	a : 0.05	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
e : 0.36	g : 0.23	c : 0.10	b : 0.10	d : 0.07	f : 0.05	a : 0.05	
e : 0.36	g : 0.23	c : 0.10	b : 0.10	d : 0.07	f : 0.05	] : 0.05	
e : 0.41	g : 0.25	c : 0.10	d : 0.07	f : 0.05	3 : 0.04	4 : 0.04	] : 0.01	
e : 0.41	g : 0.26	d : 0.10	4 : 0.07	f : 0.05	3 : 0.04	2 : 0.02	] : 0.01	
e : 0.42	g : 0.26	4 : 0.07	f : 0.05	2 : 0.05	3 : 0.04	d : 0.02	b : 0.01	B : 0.01	c : 0.01	

#score	980.1381139449512
#seq	68
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_UTR_m1_run1.txt

#BEAR
f[a[eeeeettttttttttteeeee]a]	chr12:133298555-133298824(+)$1	269	5	33	24.1062
iiiiiiiitttttttttttiiiiiiiii	chr3:48786390-48786673(-)$1	283	25	53	23.5247
ggggggxxxxxxxxxxxxxxxggggggg	chr11:64895405-64895669(-)$1	264	107	135	20.0428
=cccacccwwwwwwwwwwwwwwccc]a]	chr15:40758642-40758922(+)$1	280	93	121	22.8965
ggggggwwwwwwwwwwwwwwggggggg:	chr21:46270900-46271167(-)$1	267	12	40	22.2860
ggggggwwwwwwwwwwwwwwgggggggb	chr17:40554859-40555110(-)$1	251	198	226	22.8300
"""ddddwwwwwwwwwwwwwwdddd333	chr1:154129646-154129882(-)$1	236	116	144	22.8728
fff!!ddddtttttttttttdddd22ff	chr3:53320843-53321110(-)$1	267	45	73	22.2136
hhh[dddduuuuuuuuuuuudddd]hhh	chr17:40463424-40463697(+)$1	273	58	86	23.6871
c[eeeeevvvvvvvvvvvvveeeee]cc	chr4:146049991-146050231(+)$1	240	60	88	23.7054
fcccddddtttttttttttdddd]ccc]	chr3:183529335-183529636(+)$1	301	253	281	22.6419
gggggggwwwwwwwwwwwwwwggggggg	chr1:12072720-12072979(+)$1	259	4	32	23.6046
dd!!cccyyyyyyyyyyyyyyyyccc22	chr14:75598573-75598829(-)$1	256	210	238	23.8522
e!!a[cccuuuuuuuuuuuuccc]a22e	chr2:121050958-121051248(+)$1	290	85	113	24.8301
d!!eeeeeuuuuuuuuuuuueeeee22d	chr17:27874774-27875004(+)$1	230	188	216	24.5814
#ggggggguuuuuuuuuuuuggggggg2	chr19:47112842-47113145(+)$1	303	193	221	25.1731
$$ffffffvvvvvvvvvvvvvffffff5	chr5:153371734-153371995(-)$1	261	58	86	21.5236
[eeeee[auuuuuuuuuuuua]eeeee]	chr1:235273139-235273387(-)$1	248	185	213	25.1148
ccc[ddddvvvvvvvvvvvvvdddd]cc	chrX:24095666-24095889(+)$1	223	175	203	23.0537
ccc!!cccuuuuuuuuuuuucccccc]c	chr16:75481033-75481303(-)$1	270	82	110	25.0538
ddeeeeeyyyyyyyyyyyyyyyyeeeee	chr7:129472400-129472641(-)$1	241	185	213	23.5746
ddd[dddduuuuuuuuuuuudddd]ddd	chr22:29183760-29183983(+)$1	223	4	32	23.3489
b[ffffffvvvvvvvvvvvvvffffff2	chr19:19617823-19618080(+)$1	257	168	196	22.5841
eeeee[bbuuuuuuuuuuuubb]eeeee	chr14:55532352-55532599(+)$1	247	149	177	23.5953
c"""a[ccctttttttttttccc]a333	chr7:129473658-129473925(-)$1	267	81	109	24.4862
e!!fffffftttttttttttffffff22	chr2:70131857-70132121(+)$1	264	52	80	22.9822
========uuuuuuuuuuuu========	chr2:170496227-170496501(+)$1	274	212	240	25.7756
b!!fffffftttttttttttffffff22	chr2:98272887-98273155(-)$1	268	47	75	22.8488
hhh[eeeeettttttttttteeeee]hh	chr1:185070106-185070398(+)$1	292	187	215	23.4420
iiiiiiiitttttttttttiiiiiiiii	chr9:73002127-73002394(-)$1	267	4	32	23.5247
eeeeeee[atttttttttttaeeeee22	chr16:2821263-2821483(+)$1	220	35	63	24.0422
#ddddyyyyyyyyyyyyyyyydddd333	chr8:38830897-38831143(+)$1	246	19	47	23.3871
fffff!!bbtttttttttttbb]fffff	chr12:54633781-54634047(-)$1	266	72	100	22.2366
dd"""cccuuuuuuuuuuuuccc333dd	chr7:135613389-135613637(-)$1	248	188	216	24.3970
::eeeeeyyyyyyyyyyyyyyyyeeeee	chr1:185069741-185069980(+)$1	239	181	209	21.7787
========uuuuuuuuuuuu========	chr5:176724624-176724905(+)$1	281	83	111	25.7756
cc[fffffftttttttttttffffffcc	chr12:133299041-133299304(+)$1	263	215	243	22.8366
gggggyyyyyyyyyyyyyyyyggggggg	chr1:28299409-28299687(-)$1	278	67	95	24.4117
!bb"""ccctttttttttttccc]bb]c	chr17:37687940-37688203(+)$1	263	157	185	22.8716
ccceeeeettttttttttteeeee]ccc	chr14:77806433-77806684(-)$1	251	194	222	23.1313
!!ccc[ccctttttttttttccc]ccc]	chr11:74688089-74688367(+)$1	278	117	145	24.4185
ccceeeeewwwwwwwwwwwwwweeeee5	chr17:40465590-40465868(-)$1	278	38	66	21.9839
e[bb[cccuuuuuuuuuuuuccc]bbee	chr4:41956972-41957270(+)$1	298	180	208	23.7326
========uuuuuuuuuuuu========	chr21:15744900-15745144(-)$1	244	175	203	25.7756
ddd[eeeeettttttttttteeeeeddd	chr15:35270687-35270961(-)$1	274	181	209	22.8483
gggggxxxxxxxxxxxxxxxggggggg]	chr16:56465665-56466004(-)$1	339	271	299	19.6835
ggggg[awwwwwwwwwwwwwwagggggg	chr4:177251920-177252176(+)$1	256	197	225	23.6784
!eeeeeyyyyyyyyyyyyyyyyeeeee]	chr1:205686542-205686765(-)$1	223	166	194	24.3425
iiiiiiiyyyyyyyyyyyyyyyyiiiii	chr1:225977880-225978119(+)$1	239	83	111	24.6493
hh[ddddyyyyyyyyyyyyyyyydddd]	chr7:139257211-139257449(-)$1	238	62	90	23.2423
hhh[eeeeettttttttttteeeee]hh	chr7:129805382-129805641(-)$1	259	173	201	23.4420
[ccc[ccctttttttttttccc22ccc]	chr12:107366553-107366859(+)$1	306	158	186	23.2360
(ggggggguuuuuuuuuuuugggggggb	chr11:95566225-95566545(-)$1	320	103	131	24.1137
c!!ddddvvvvvvvvvvvvvdddd]ccc	chr2:152657774-152658080(-)$1	306	62	90	23.0474
b[ffffffuuuuuuuuuuuuffffff]b	chr17:42269089-42269371(-)$1	282	212	240	23.5347
iiiiiiiwwwwwwwwwwwwwwiiiiiii	chr16:11966468-11966746(-)$1	278	240	268	23.7416
!eeeeeyyyyyyyyyyyyyyyyeeeee]	chr12:63041498-63041774(-)$1	276	107	135	24.3425
g[bb"""bbtttttttttttbbbb]ggg	chr11:120358245-120358490(+)$1	245	180	208	22.1140

#otherMatches

#Seq PSSM
UGAUGUUGGGUCUGAACUCACCAACUUG	chr12:133298555-133298824(+)$1	269	5	33	24.1062
UAAAUUUGAAUGUUGUAACCAAGUUUAU	chr3:48786390-48786673(-)$1	283	25	53	23.5247
UUCUUCCCCCACCCCUUUCCAGGAGAAG	chr11:64895405-64895669(-)$1	264	107	135	20.0428
GGGGCCAGCUUUACCUCACCCACUGUGA	chr15:40758642-40758922(+)$1	280	93	121	22.8965
GGCAGAACCCUGCGUUUCUCUCUGUCCA	chr21:46270900-46271167(-)$1	267	12	40	22.2860
CCCCUUGUUCCUCCCCAUUAAAGGGGGU	chr17:40554859-40555110(-)$1	251	198	226	22.8300
CCUGAAGCAGCAAUCGAAUCCCUUUCUC	chr1:154129646-154129882(-)$1	236	116	144	22.8728
GUGAAGUAUAUUUUAUAUGAAUGCCCCA	chr3:53320843-53321110(-)$1	267	45	73	22.2136
UCUCUGUUUGUAACCUUGUCGACAAAGA	chr17:40463424-40463697(+)$1	273	58	86	23.6871
uguuguaaaaaauucaaauauacagaau	chr4:146049991-146050231(+)$1	240	60	88	23.7054
GCUCCAGGAAAAUCGGAAACCUGUGAGU	chr3:183529335-183529636(+)$1	301	253	281	22.6419
GUGGAAAACCCAGUGUCCAUCUUUCCAC	chr1:12072720-12072979(+)$1	259	4	32	23.6046
UUUUGUUCCCAAGUGUGACCCUAAACUU	chr14:75598573-75598829(-)$1	256	210	238	23.8522
GUUGUGGAAUUUCUUUCUUCUCCCCUUC	chr2:121050958-121051248(+)$1	290	85	113	24.8301
ACUUUUAUGAAAUCACUACAAUAGGUCU	chr17:27874774-27875004(+)$1	230	188	216	24.5814
ACAGUGGGCAACACUCACAUCCCACUGG	chr19:47112842-47113145(+)$1	303	193	221	25.1731
UAUUAUAGCCAUGUGAAUUAACUGUAGC	chr5:153371734-153371995(-)$1	261	58	86	21.5236
gugagaacaaaaaaaccccagaucucag	chr1:235273139-235273387(-)$1	248	185	213	25.1148
AAGUUAUCUCCCUCUCCCUGUGAUGCCU	chrX:24095666-24095889(+)$1	223	175	203	23.0537
AUAUUUGAUUUAAGCAGUUUUCAUGUGU	chr16:75481033-75481303(-)$1	270	82	110	25.0538
GCCUCUGACCAGAGCCCCAGCACCAGAG	chr7:129472400-129472641(-)$1	241	185	213	23.5746
UGUAAUGGUAUAAUGCCCUUCCAUCACA	chr22:29183760-29183983(+)$1	223	4	32	23.3489
AGGGAUUUGGGGAAAAGGAAGGAAUUUG	chr19:19617823-19618080(+)$1	257	168	196	22.5841
CUGUUUGUAAAGUGCUUAUGGCUAACAG	chr14:55532352-55532599(+)$1	247	149	177	23.5953
GUAUUGUGCUUAGAAAGGUUGCAGAUUU	chr7:129473658-129473925(-)$1	267	81	109	24.4862
AAUGAAAAAGCAUAACUAGAUUUUUCUA	chr2:70131857-70132121(+)$1	264	52	80	22.9822
AUUUUUGACUUAAUAUCCUUUUAAAAAU	chr2:170496227-170496501(+)$1	274	212	240	25.7756
AGCUGGCGUGUGGGAAUUGAGCGCCAUG	chr2:98272887-98273155(-)$1	268	47	75	22.8488
UUGCACUUUAGCCUUGAUGAAAAGUACA	chr1:185070106-185070398(+)$1	292	187	215	23.4420
ucuccuuuuauuuuuUUGCGGGGGAGGG	chr9:73002127-73002394(-)$1	267	4	32	23.5247
GAGGUUGUGAACCCCUCCCCCCAACUUU	chr16:2821263-2821483(+)$1	220	35	63	24.0422
AGACCCCAUGAAUAAAUAGCAGGUUCAG	chr8:38830897-38831143(+)$1	246	19	47	23.3871
AGUUGAGGAGGGCUAGAGAAUCACAAUU	chr12:54633781-54634047(-)$1	266	72	100	22.2366
GUUCUUAUGACCUGCAGAAAAUAUUUAC	chr7:135613389-135613637(-)$1	248	188	216	24.3970
CUGUCCUUAAAAACAAUUCUCAUAGGAU	chr1:185069741-185069980(+)$1	239	181	209	21.7787
GAGAAGUUUGAUUCUAAAGUAGCUUCUC	chr5:176724624-176724905(+)$1	281	83	111	25.7756
UCUAUUUCUCUGUCUACUUUGGAAAUGA	chr12:133299041-133299304(+)$1	263	215	243	22.8366
UGCUUCUCAAAUCCCAUUCUAAAGUAGG	chr1:28299409-28299687(-)$1	278	67	95	24.4117
UGAUUUGAAUAAAUGUUUCUUUCCUCUC	chr17:37687940-37688203(+)$1	263	157	185	22.8716
CCCCAUGAAAAAUUCUAAGUUGUGAGGG	chr14:77806433-77806684(-)$1	251	194	222	23.1313
UGUCCUGAAAUUUUAGUCUAUUCUGGGU	chr11:74688089-74688367(+)$1	278	117	145	24.4185
UCUUCAGUACAUAAUAAGCUUAACUGAU	chr17:40465590-40465868(-)$1	278	38	66	21.9839
GUCUAUCCUGAAAUAAUAAUGGAGAGUA	chr4:41956972-41957270(+)$1	298	180	208	23.7326
UUCCUCAUAUUUAGUUUUGAAUGAGGAA	chr21:15744900-15745144(-)$1	244	175	203	25.7756
AAUAUCUUUAAAGAGAACUAGAAGAAUU	chr15:35270687-35270961(-)$1	274	181	209	22.8483
UUUGGAAUAAUGUGAAUCAACCGAAAAC	chr16:56465665-56466004(-)$1	339	271	299	19.6835
CUGAAAGGAAAAUAACAAAAACUUCAGA	chr4:177251920-177252176(+)$1	256	197	225	23.6784
UCAUAUUUCCUUCUCUAAAUAUAUAUGU	chr1:205686542-205686765(-)$1	223	166	194	24.3425
AGUACGAUAUUUGAUAAUUAUAUUUGUA	chr1:225977880-225978119(+)$1	239	83	111	24.6493
UUAUUUUAAAAAAGAAAAAGGAAAAAAA	chr7:139257211-139257449(-)$1	238	62	90	23.2423
UGUAUUAAGUUUAUGuauauuuuaaaau	chr7:129805382-129805641(-)$1	259	173	201	23.4420
CAUGCCUGAAAAUUUGAAACAGACCAUU	chr12:107366553-107366859(+)$1	306	158	186	23.2360
AGUUGAAGcuccuuagccuccuucgacc	chr11:95566225-95566545(-)$1	320	103	131	24.1137
ACUUUCUCAAAUCCCUAUAAAGAAUUAC	chr2:152657774-152658080(-)$1	306	62	90	23.0474
UACUCUCAUUACCAUUUUCCUGGGGGCA	chr17:42269089-42269371(-)$1	282	212	240	23.5347
UAAUGUUUUUUAUCUGGAUGUAACAUUG	chr16:11966468-11966746(-)$1	278	240	268	23.7416
AUCUGUUUUUUAUUCCCCUUCCACAGAA	chr12:63041498-63041774(-)$1	276	107	135	24.3425
GUGACCUGCUGUGACACUGUGCUCUCUU	chr11:120358245-120358490(+)$1	245	180	208	22.1140

#DB
(.(.(((((...........))))).).	chr12:133298555-133298824(+)$1	1	5	33	24.1062
((((((((...........)))))))))	chr3:48786390-48786673(-)$1	1	25	53	23.5247
((((((...............)))))))	chr11:64895405-64895669(-)$1	1	107	135	20.0428
((((((((..............))).).	chr15:40758642-40758922(+)$1	1	93	121	22.8965
((((((..............))))))).	chr21:46270900-46271167(-)$1	1	12	40	22.2860
((((((..............))))))))	chr17:40554859-40555110(-)$1	1	198	226	22.8300
...((((..............))))...	chr1:154129646-154129882(-)$1	1	116	144	22.8728
(((..((((...........))))..))	chr3:53320843-53321110(-)$1	1	45	73	22.2136
(((.((((............)))).)))	chr17:40463424-40463697(+)$1	1	58	86	23.6871
(.(((((.............))))).))	chr4:146049991-146050231(+)$1	1	60	88	23.7054
((((((((...........)))).))).	chr3:183529335-183529636(+)$1	1	253	281	22.6419
(((((((..............)))))))	chr1:12072720-12072979(+)$1	1	4	32	23.6046
((..(((................)))..	chr14:75598573-75598829(-)$1	1	210	238	23.8522
(..(.(((............))).)..)	chr2:121050958-121051248(+)$1	1	85	113	24.8301
(..(((((............)))))..)	chr17:27874774-27875004(+)$1	1	188	216	24.5814
.(((((((............))))))).	chr19:47112842-47113145(+)$1	1	193	221	25.1731
..((((((.............)))))).	chr5:153371734-153371995(-)$1	1	58	86	21.5236
.(((((.(............).))))).	chr1:235273139-235273387(-)$1	1	185	213	25.1148
(((.((((.............)))).))	chrX:24095666-24095889(+)$1	1	175	203	23.0537
(((..(((............)))))).)	chr16:75481033-75481303(-)$1	1	82	110	25.0538
(((((((................)))))	chr7:129472400-129472641(-)$1	1	185	213	23.5746
(((.((((............)))).)))	chr22:29183760-29183983(+)$1	1	4	32	23.3489
(.((((((.............)))))).	chr19:19617823-19618080(+)$1	1	168	196	22.5841
(((((.((............)).)))))	chr14:55532352-55532599(+)$1	1	149	177	23.5953
(...(.(((...........))).)...	chr7:129473658-129473925(-)$1	1	81	109	24.4862
(..((((((...........))))))..	chr2:70131857-70132121(+)$1	1	52	80	22.9822
((((((((............))))))))	chr2:170496227-170496501(+)$1	1	212	240	25.7756
(..((((((...........))))))..	chr2:98272887-98273155(-)$1	1	47	75	22.8488
(((.(((((...........))))).))	chr1:185070106-185070398(+)$1	1	187	215	23.4420
((((((((...........)))))))))	chr9:73002127-73002394(-)$1	1	4	32	23.5247
(((((((.(...........))))))..	chr16:2821263-2821483(+)$1	1	35	63	24.0422
.((((................))))...	chr8:38830897-38831143(+)$1	1	19	47	23.3871
(((((..((...........)).)))))	chr12:54633781-54634047(-)$1	1	72	100	22.2366
((...(((............)))...))	chr7:135613389-135613637(-)$1	1	188	216	24.3970
..(((((................)))))	chr1:185069741-185069980(+)$1	1	181	209	21.7787
((((((((............))))))))	chr5:176724624-176724905(+)$1	1	83	111	25.7756
((.((((((...........))))))))	chr12:133299041-133299304(+)$1	1	215	243	22.8366
(((((................)))))))	chr1:28299409-28299687(-)$1	1	67	95	24.4117
.((...(((...........))).)).)	chr17:37687940-37688203(+)$1	1	157	185	22.8716
((((((((...........))))).)))	chr14:77806433-77806684(-)$1	1	194	222	23.1313
..(((.(((...........))).))).	chr11:74688089-74688367(+)$1	1	117	145	24.4185
((((((((..............))))).	chr17:40465590-40465868(-)$1	1	38	66	21.9839
(.((.(((............))).))))	chr4:41956972-41957270(+)$1	1	180	208	23.7326
((((((((............))))))))	chr21:15744900-15745144(-)$1	1	175	203	25.7756
(((.(((((...........))))))))	chr15:35270687-35270961(-)$1	1	181	209	22.8483
(((((...............))))))).	chr16:56465665-56466004(-)$1	1	271	299	19.6835
(((((.(..............)))))))	chr4:177251920-177252176(+)$1	1	197	225	23.6784
.(((((................))))).	chr1:205686542-205686765(-)$1	1	166	194	24.3425
(((((((................)))))	chr1:225977880-225978119(+)$1	1	83	111	24.6493
((.((((................)))).	chr7:139257211-139257449(-)$1	1	62	90	23.2423
(((.(((((...........))))).))	chr7:129805382-129805641(-)$1	1	173	201	23.4420
.(((.(((...........)))..))).	chr12:107366553-107366859(+)$1	1	158	186	23.2360
.(((((((............))))))))	chr11:95566225-95566545(-)$1	1	103	131	24.1137
(..((((.............)))).)))	chr2:152657774-152658080(-)$1	1	62	90	23.0474
(.((((((............)))))).)	chr17:42269089-42269371(-)$1	1	212	240	23.5347
(((((((..............)))))))	chr16:11966468-11966746(-)$1	1	240	268	23.7416
.(((((................))))).	chr12:63041498-63041774(-)$1	1	107	135	24.3425
(.((...((...........)))).)))	chr11:120358245-120358490(+)$1	1	180	208	22.1140

#PSSM
g : 0.13	c : 0.13	d : 0.10	e : 0.08	f : 0.06	i : 0.06	= : 0.06	h : 0.06	! : 0.06	b : 0.05	# : 0.03	[ : 0.03	" : 0.01	$ : 0.01	: : 0.01	( : 0.01	
g : 0.15	c : 0.13	[ : 0.10	d : 0.10	! : 0.10	e : 0.08	i : 0.06	h : 0.06	= : 0.05	" : 0.03	f : 0.03	$ : 0.01	: : 0.01	b : 0.01	
g : 0.15	c : 0.13	e : 0.13	! : 0.10	f : 0.08	i : 0.06	" : 0.05	h : 0.05	d : 0.05	= : 0.05	b : 0.05	[ : 0.03	a : 0.01	
e : 0.18	g : 0.15	[ : 0.12	f : 0.12	i : 0.06	c : 0.06	d : 0.06	! : 0.05	" : 0.05	= : 0.05	b : 0.03	a : 0.01	
e : 0.25	g : 0.15	d : 0.13	f : 0.12	i : 0.06	[ : 0.05	= : 0.05	" : 0.05	a : 0.03	! : 0.03	c : 0.03	
e : 0.24	d : 0.13	c : 0.12	g : 0.10	f : 0.10	i : 0.06	[ : 0.06	= : 0.05	y : 0.03	" : 0.03	! : 0.01	x : 0.01	
e : 0.18	c : 0.17	d : 0.13	f : 0.10	i : 0.06	y : 0.06	g : 0.05	= : 0.05	x : 0.03	w : 0.03	[ : 0.01	b : 0.01	! : 0.01	a : 0.01	" : 0.01	
c : 0.15	y : 0.15	e : 0.12	w : 0.10	f : 0.10	d : 0.08	b : 0.05	= : 0.05	i : 0.03	x : 0.03	v : 0.03	g : 0.03	a : 0.01	[ : 0.01	
u : 0.25	y : 0.15	w : 0.13	t : 0.08	v : 0.08	e : 0.06	c : 0.05	f : 0.05	x : 0.03	b : 0.03	d : 0.01	a : 0.01	
t : 0.32	u : 0.25	y : 0.15	w : 0.13	v : 0.08	x : 0.03	
t : 0.32	u : 0.25	y : 0.15	w : 0.13	v : 0.08	x : 0.03	
t : 0.32	u : 0.25	y : 0.15	w : 0.13	v : 0.08	x : 0.03	
t : 0.32	u : 0.25	y : 0.15	w : 0.13	v : 0.08	x : 0.03	
t : 0.32	u : 0.25	y : 0.15	w : 0.13	v : 0.08	x : 0.03	
t : 0.32	u : 0.25	y : 0.15	w : 0.13	v : 0.08	x : 0.03	
t : 0.32	u : 0.25	y : 0.15	w : 0.13	v : 0.08	x : 0.03	
t : 0.32	u : 0.25	y : 0.15	w : 0.13	v : 0.08	x : 0.03	
t : 0.32	u : 0.25	y : 0.15	w : 0.13	v : 0.08	x : 0.03	
t : 0.32	u : 0.25	y : 0.15	w : 0.13	v : 0.08	x : 0.03	
u : 0.25	t : 0.24	y : 0.15	w : 0.13	v : 0.08	i : 0.03	x : 0.03	d : 0.01	e : 0.01	c : 0.01	
y : 0.15	c : 0.13	e : 0.12	w : 0.10	g : 0.08	d : 0.08	f : 0.06	v : 0.05	b : 0.05	= : 0.05	i : 0.03	a : 0.03	x : 0.01	
e : 0.13	g : 0.13	d : 0.13	c : 0.13	y : 0.12	f : 0.10	i : 0.05	b : 0.05	= : 0.05	w : 0.03	] : 0.01	a : 0.01	
e : 0.20	g : 0.15	c : 0.13	d : 0.13	f : 0.10	y : 0.08	i : 0.05	= : 0.05	] : 0.03	2 : 0.01	b : 0.01	
e : 0.25	g : 0.15	d : 0.13	f : 0.12	] : 0.10	i : 0.06	c : 0.05	= : 0.05	3 : 0.01	2 : 0.01	b : 0.01	
e : 0.24	g : 0.15	f : 0.12	c : 0.10	] : 0.08	i : 0.06	d : 0.06	= : 0.05	a : 0.03	b : 0.03	2 : 0.01	3 : 0.01	
g : 0.17	e : 0.13	c : 0.12	f : 0.12	] : 0.10	i : 0.06	3 : 0.06	2 : 0.05	d : 0.05	= : 0.05	b : 0.03	h : 0.01	
g : 0.17	c : 0.13	e : 0.13	2 : 0.10	i : 0.06	f : 0.06	d : 0.06	3 : 0.05	h : 0.05	] : 0.05	= : 0.05	a : 0.03	
] : 0.17	c : 0.12	2 : 0.10	g : 0.08	e : 0.08	i : 0.06	d : 0.06	b : 0.05	3 : 0.05	h : 0.05	= : 0.05	f : 0.03	5 : 0.03	: : 0.01	

#score	1360.5546335945144
#seq	58
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_transcript_m1_run2.txt

#BEAR
ff[eeeeettttttttttteeeee22ffff	chr5:74657037-74657311(+)$1	274	51	81	18.3654
hhhhhhxxxxxxxxxxxxxxxhhhhhhhh:	chr3:9519599-9519840(+)$1	241	210	240	16.7414
ggggggguuuuuuuuuuuugggggggccc[	chr11:65195635-65195873(+)$1	238	119	149	22.4248
####cccxxxxxxxxxxxxxxxccc4444d	chr5:38937946-38938234(-)$1	288	94	124	18.4002
hhhh[bbvvvvvvvvvvvvvbb]hhhhhhh	chr10:121340794-121341043(-)$1	249	99	129	19.6546
"""ccc^^^^^^^^^^^^^^^^^^ccc444	chr19:39220609-39220885(+)$1	276	44	74	18.2497
hhhhhhhvvvvvvvvvvvvvhhhhhhhh55	chr8:101715364-101715617(-)$1	253	6	36	18.5651
gggggggxxxxxxxxxxxxxxxggggggg:	chr1:203276584-203276885(+)$1	301	271	301	18.7172
eeeeeccctttttttttttccc]eeeee::	chr17:27589256-27589525(-)$1	269	64	94	17.6198
"""ddddtttttttttttdddd]ggggggg	chr22:22114551-22114907(-)$1	356	156	186	19.0897
^^^^^^^^^^^^^^^^^^^ffffffiiiii	chr17:47676744-47677007(-)$1	263	144	174	17.6792
^^^^^^^^^^^^^^^^^^^ggggggg]a22	chr1:226170612-226170868(-)$1	256	177	207	17.9687
hhhhhhhttttttttttthhhhhhhh4444	chr17:56050935-56051185(-)$1	250	62	92	17.2202
ee[ddddyyyyyyyyyyyyyyyydddd]ee	chr19:46029981-46030282(+)$1	301	62	92	20.0023
gggggggyyyyyyyyyyyyyyyyggggggg	chr1:29474185-29474471(-)$1	286	37	67	21.7743
[dddd^^^^^^^^^^^^^^^^^^dddd]ff	chr8:23429727-23430007(+)$1	280	106	136	17.3143
hhhhhwwwwwwwwwwwwwwhhhhhhhh]cc	chr1:78435343-78435614(-)$1	271	65	95	20.0308
=======xxxxxxxxxxxxxxx========	chr15:77242025-77242307(+)$1	282	225	255	19.3398
ccc[ddddtttttttttttdddd]cccddd	chr16:56643189-56643481(+)$1	292	234	264	18.3313
hhhhhhhvvvvvvvvvvvvvhhhhhhhh55	chr8:101715417-101715639(-)$1	222	28	58	18.5651
ggggg[cccsssssssssscccggggggg2	chr10:74035222-74035599(+)$1	377	199	229	15.0404
gggggggxxxxxxxxxxxxxxxggggggg]	chr11:85989505-85989841(+)$1	336	63	93	19.4668
""eeeeeuuuuuuuuuuuueeeee4444hh	chrX:123234620-123234884(+)$1	264	162	192	21.0753
hh[ddddwwwwwwwwwwwwwwddddhhhhh	chr10:22032241-22032553(+)$1	312	159	189	19.9808
dddd^^^^^^^^^^^^^^^^^^^^^dddd>	chr16:4307125-4307413(-)$1	288	84	114	16.6147
cccyyyyyyyyyyyyyyyyccc333=====	chr17:34171869-34172143(+)$1	274	236	266	21.6567
cc[eeeeettttttttttteeeee]ccc]a	chr5:179047168-179047424(-)$1	256	106	136	19.6419
dddyyyyyyyyyyyyyyyydddd]ddddee	chr1:78435236-78435486(-)$1	250	172	202	19.5257
[ffffffuuuuuuuuuuuuffffff22eee	chr1:150237738-150238028(-)$1	290	195	225	20.5567
ffff!!bbtttttttttttbb22ffffff:	chr5:96365744-96365999(+)$1	255	129	159	17.0041
^^^^^^^^^^^^^^^^^^^ccc]bbbb]==	chr5:179046402-179046681(-)$1	279	45	75	17.3237
ggggggauuuuuuuuuuuua]ggggggg33	chr12:89984431-89984714(-)$1	283	203	233	23.4240
ggggggg^^^^^^^^^^^^^^^^^^^^^^^	chr17:38544691-38544930(-)$1	239	158	188	16.6777
eeeyyyyyyyyyyyyyyyyeeeee::bb[e	chr20:45838945-45839220(-)$1	275	26	56	17.9601
ddddddxxxxxxxxxxxxxxxdddd333dd	chr7:26238595-26238882(-)$1	287	221	251	17.4855
^^^^^^^^^^^^^^^^^^^ccc]ggggggg	chr1:53692502-53692756(-)$1	254	68	98	18.5831
gggggggxxxxxxxxxxxxxxxggggggg:	chr9:135973042-135973335(-)$1	293	115	145	18.7172
=======uuuuuuuuuuuu==========:	chr12:25361984-25362233(-)$1	249	102	132	21.9316
hhh^^^^^^^^^^^^^^^^^^hhhhhhhh2	chr4:174252814-174253092(-)$1	278	238	268	17.5946
[ddddwwwwwwwwwwwwwwdddd]dddd33	chr4:78088074-78088336(+)$1	262	59	89	20.3054
!!eeeeeuuuuuuuuuuuueeeee333ggg	chr1:203823020-203823281(+)$1	261	10	40	22.2086
hhhhhhhuuuuuuuuuuuuhhhhhhhhbb[	chr17:56078635-56078908(-)$1	273	170	200	19.4925
========ttttttttttt===========	chr15:34671260-34671628(-)$1	368	299	329	19.9612
hhhhhhhuuuuuuuuuuuuhhhhhhhh:::	chr17:56078570-56078822(-)$1	252	84	114	17.6424
f[ccc^^^^^^^^^^^^^^^^^^cccffff	chr1:20978635-20978894(-)$1	259	138	168	17.9673
cc[ddddwwwwwwwwwwwwwwddddccc22	chr3:179342046-179342300(+)$1	254	72	102	20.7412
eefffffftttttttttttffffff]eeee	chr6:43753926-43754176(+)$1	250	146	176	17.8127
gggggggvvvvvvvvvvvvvgggggggggg	chr8:101715439-101715686(-)$1	247	75	105	22.1746
c[ccc^^^^^^^^^^^^^^^^^^ccc]ccc	chr8:23429807-23430070(+)$1	263	156	186	18.6816
ff[cccvvvvvvvvvvvvvccc]ffffff2	chr2:68405914-68406198(-)$1	284	111	141	21.0904
[eeeeevvvvvvvvvvvvveeeee]ccc]b	chr7:932895-933213(+)$1	318	250	280	21.1588
^^^^^^^^^^^^^^^^^^^ccc]ggggggg	chr8:128753520-128753767(+)$1	247	216	246	18.5831
!ffffffvvvvvvvvvvvvvffffff22cc	chr11:65194922-65195144(+)$1	222	177	207	20.2451
+fffffftttttttttttffffff]=====	chr19:34883041-34883257(+)$1	216	30	60	17.9763
gggggggvvvvvvvvvvvvvgggggggggg	chr14:35870988-35871277(-)$1	289	115	145	22.1746
cc!!cccwwwwwwwwwwwwwwccc22ccc:	chr6:31698288-31698539(-)$1	251	70	100	21.0523
hhhhhhhttttttttttthhhhhhhh22bb	chr3:33910861-33911121(+)$1	260	185	215	16.3961
^^^^^^^^^^^^^^^^^^^ggggggg]ccc	chr11:47491731-47491997(-)$1	266	142	172	18.1605
eeeeee[atttttttttttaeeeee22eee	chr16:2821252-2821486(+)$1	234	47	77	19.1834
effffffuuuuuuuuuuuuffffff00000	chr6:17615241-17615496(-)$1	255	122	152	19.0807
f^^^^^^^^^^^^^^^^^^ffffff4444f	chr8:101734082-101734294(-)$1	212	139	169	17.1771
^^^^^^^^^^^^^^^^^^^ccc]bbbb]==	chr5:179046547-179046837(-)$1	290	201	231	17.3237
fffff[auuuuuuuuuuuua]ffffff:::	chr19:10406306-10406614(+)$1	308	75	105	18.8648
hhhhhhhttttttttttthhhhhhhh4444	chr17:56050985-56051202(-)$1	217	79	109	17.2202
^^^^^^^^^^^^^^^^^^^eeeeeddddii	chr7:5646097-5646351(+)$1	254	154	184	17.3032

#otherMatches

#Seq PSSM
CUCUAAGCCAACUUUAAUUGCUUAAAAGAC	chr5:74657037-74657311(+)$1	274	51	81	18.3654
CUUAACCAUAAUAAUCAUAAAGUUGAGAAC	chr3:9519599-9519840(+)$1	241	210	240	16.7414
GAGAGCCAGUAUUGGUUGAGGCUCUUCAGU	chr11:65195635-65195873(+)$1	238	119	149	22.4248
UGUGAUUUUCUUGUUUUUGUAUAAUGUGUA	chr5:38937946-38938234(-)$1	288	94	124	18.4002
UUUUGAUAUUUUAGCUAUAAGUGAAAAGUA	chr10:121340794-121341043(-)$1	249	99	129	19.6546
CCCCUGAACCGCACCCCAUCCCACCAGCCC	chr19:39220609-39220885(+)$1	276	44	74	18.2497
AAUUUGUUUUUUUAACAUUUACAGAUUGAU	chr8:101715364-101715617(-)$1	253	6	36	18.5651
AGCCAAGGAGAAGUGGGAGACGUUUGGCUA	chr1:203276584-203276885(+)$1	301	271	301	18.7172
ACAUAACUGAAGUGAAAAAAGUCUGUGUUU	chr17:27589256-27589525(-)$1	269	64	94	17.6198
UUUCAUCUUAAUUCUUUUGAUGUUGUAAAC	chr22:22114551-22114907(-)$1	356	156	186	19.0897
aaaacaaaaacagaacaaaagaagagagaa	chr17:47676744-47677007(-)$1	263	144	174	17.6792
uguuuuaauaauuuuuuuaaguuggauguu	chr1:226170612-226170868(-)$1	256	177	207	17.9687
uuuuaaaaaaaaaaaaaauuuaaaaaaaau	chr17:56050935-56051185(-)$1	250	62	92	17.2202
GAUGCUGUAACUUUUUGGAACCUCAGUUUU	chr19:46029981-46030282(+)$1	301	62	92	20.0023
CUGCAGUAACCCAUAGGAAAUAAACUGUAG	chr1:29474185-29474471(-)$1	286	37	67	21.7743
GAAGUUUUUGAAUUUGUGUGUGUGCUUGUG	chr8:23429727-23430007(+)$1	280	106	136	17.3143
CGGUAUUUUUCUGUUAUUUUAUUGAGAUAU	chr1:78435343-78435614(-)$1	271	65	95	20.0308
UUGUUUGCUUUUCUUUAACUUUCAGAUAAA	chr15:77242025-77242307(+)$1	282	225	255	19.3398
UCCUUUAUAUGCCUUAAAAAUAACGGACUG	chr16:56643189-56643481(+)$1	292	234	264	18.3313
AAUUUGUUUUUUUAACAUUUACAGAUUGAU	chr8:101715417-101715639(-)$1	222	28	58	18.5651
UUUUGUAUCUUGUUUUUCUGAUCGGAGCAU	chr10:74035222-74035599(+)$1	377	199	229	15.0404
AUACUUUUGCCUAAUCAAAAUUAGAGUGUG	chr11:85989505-85989841(+)$1	336	63	93	19.4668
UAUGAAUUCUCUUACAUUUAUUUACUGGUU	chrX:123234620-123234884(+)$1	264	162	192	21.0753
UGUGGUUUAUUUUACUUAUUUAACCCACUG	chr10:22032241-22032553(+)$1	312	159	189	19.9808
cuuuuuuuuuuuuuuuuACAAUUUUGAGGU	chr16:4307125-4307413(-)$1	288	84	114	16.6147
CCACAUUUUAACAAUUUUUUGGAACUUGAA	chr17:34171869-34172143(+)$1	274	236	266	21.6567
GCCUAAAGUAUUUGAAUGUUUUUAUGCUGA	chr5:179047168-179047424(-)$1	256	106	136	19.6419
AAUAUUAAAAAACAUAUAAAUUGCUUAGAA	chr1:78435236-78435486(-)$1	250	172	202	19.5257
UGAUUUUGACUAAUAAAAAAGAAUUUGUAA	chr1:150237738-150238028(-)$1	290	195	225	20.5567
AAUAGUCUUCUUUAAUCCUAGUGUGUUUUC	chr5:96365744-96365999(+)$1	255	129	159	17.0041
AAGUUUUUUUUAAUAUAUACUGUACCAUGG	chr5:179046402-179046681(-)$1	279	45	75	17.3237
GAUCAUCAGUAGUACCCAAGCAUGGUCCUG	chr12:89984431-89984714(-)$1	283	203	233	23.4240
UAGAAUGCCUCUUUUAAAACACACACUACA	chr17:38544691-38544930(-)$1	239	158	188	16.6777
UGCUUUUGGUGUAAAUAAUGUACAAUUUGU	chr20:45838945-45839220(-)$1	275	26	56	17.9601
CAAGUAACCAUUUCAAAAGACUGCUUUGUG	chr7:26238595-26238882(-)$1	287	221	251	17.4855
GGGUGGGAGUAGAAAAUUUUGUGUAUAUCA	chr1:53692502-53692756(-)$1	254	68	98	18.5831
AAGCAAAAAGAAAAAAAAAAUGUUUGUUUA	chr9:135973042-135973335(-)$1	293	115	145	18.7172
uuucuauaaaaagaaaaaaauGGAAAAAAA	chr12:25361984-25362233(-)$1	249	102	132	21.9316
uuauuuCUAUUGUCUUUGUCUUAAUAUGCU	chr4:174252814-174253092(-)$1	278	238	268	17.5946
AACAUGUAAAUCUUUUAAAAUGUACAUAAA	chr4:78088074-78088336(+)$1	262	59	89	20.3054
CCAUGGAUUUUCUACUUAUUUCGUUUUUGG	chr1:203823020-203823281(+)$1	261	10	40	22.2086
GUAAAAUGAUUUUUCCUAAGUUUUAUGCUU	chr17:56078635-56078908(-)$1	273	170	200	19.4925
GGCAUUAUUGACUGCUGAUGUGAUGCUACU	chr15:34671260-34671628(-)$1	368	299	329	19.9612
GUAAAAUGAUUUUUCCUAAGUUUUAUGCUU	chr17:56078570-56078822(-)$1	252	84	114	17.6424
UGUGGGAGAUGCAACACUGAGAGCCAAGGG	chr1:20978635-20978894(-)$1	259	138	168	17.9673
UAAUAAUGUUAAGCACCAGUAAUUAUAGUA	chr3:179342046-179342300(+)$1	254	72	102	20.7412
GAAAAGAUAUUAACAUCACGUCUUUGUCUC	chr6:43753926-43754176(+)$1	250	146	176	17.8127
AAUUUGUUUUUUUAACAUUUACAGAUUGAU	chr8:101715439-101715686(-)$1	247	75	105	22.1746
CAACAAAGUAAUAAAUCAGUGAAUGUGGCC	chr8:23429807-23430070(+)$1	263	156	186	18.6816
GUUGAAUGUUUAGUUUUUCUUCUGCAUGAU	chr2:68405914-68406198(-)$1	284	111	141	21.0904
GUUGCAGGUGAGUGUUGGGUGUAGGCGUGG	chr7:932895-933213(+)$1	318	250	280	21.1588
UUUUCAUCAAUUGCCCCUUCAGAGGGUGGU	chr8:128753520-128753767(+)$1	247	216	246	18.5831
UGCAGAAUCCAGGGUCCUCUUUCUGCUUGC	chr11:65194922-65195144(+)$1	222	177	207	20.2451
AUCUCAGUCUGUCAAUUUCUGAGGAGGUUG	chr19:34883041-34883257(+)$1	216	30	60	17.9763
UUUUUCUAAAAAAAGAAAAAAGAAGAAAAA	chr14:35870988-35871277(-)$1	289	115	145	22.1746
AUGAGGGAAAGAAAUGGGGGGCCUGGGUCA	chr6:31698288-31698539(-)$1	251	70	100	21.0523
CCAGAGAUUUUAGAUUCUUUUCUGGUUAGA	chr3:33910861-33911121(+)$1	260	185	215	16.3961
aaaacaaaaaaaaaaaagaaaaaaaUGCUA	chr11:47491731-47491997(-)$1	266	142	172	18.1605
AGGUUGUGAACCCCUCCCCCCAACUUUUCA	chr16:2821252-2821486(+)$1	234	47	77	19.1834
UGACUUUGGAUAAUAAGGAAAAGUUUAAUA	chr6:17615241-17615496(-)$1	255	122	152	19.0807
UUUUUUUUCUUCCUCUUUUAUAAAAUAACC	chr8:101734082-101734294(-)$1	212	139	169	17.1771
AAGUUUUUUUUAAUAUAUACUGUACCAUGG	chr5:179046547-179046837(-)$1	290	201	231	17.3237
UCCCGGUAGACUAGACGGAAGUGGGACAGA	chr19:10406306-10406614(+)$1	308	75	105	18.8648
uuuuaaaaaaaaaaaaaauuuaaaaaaaau	chr17:56050985-56051202(-)$1	217	79	109	17.2202
AAUAGCGAAAUAAAAUAACUCAGUCUGCAG	chr7:5646097-5646351(+)$1	254	154	184	17.3032

#DB
((.(((((...........)))))..))))	chr5:74657037-74657311(+)$1	1	51	81	18.3654
((((((...............)))))))).	chr3:9519599-9519840(+)$1	1	210	240	16.7414
(((((((............)))))))(((.	chr11:65195635-65195873(+)$1	1	119	149	22.4248
....(((...............)))....)	chr5:38937946-38938234(-)$1	1	94	124	18.4002
((((.((.............)).)))))))	chr10:121340794-121341043(-)$1	1	99	129	19.6546
...(((..................)))...	chr19:39220609-39220885(+)$1	1	44	74	18.2497
(((((((.............))))))))..	chr8:101715364-101715617(-)$1	1	6	36	18.5651
(((((((...............))))))).	chr1:203276584-203276885(+)$1	1	271	301	18.7172
((((((((...........))).)))))..	chr17:27589256-27589525(-)$1	1	64	94	17.6198
...((((...........)))).)))))))	chr22:22114551-22114907(-)$1	1	156	186	19.0897
...................)))))))))))	chr17:47676744-47677007(-)$1	1	144	174	17.6792
...................))))))).)..	chr1:226170612-226170868(-)$1	1	177	207	17.9687
(((((((...........))))))))....	chr17:56050935-56051185(-)$1	1	62	92	17.2202
((.((((................)))).))	chr19:46029981-46030282(+)$1	1	62	92	20.0023
(((((((................)))))))	chr1:29474185-29474471(-)$1	1	37	67	21.7743
.((((..................)))).))	chr8:23429727-23430007(+)$1	1	106	136	17.3143
(((((..............)))))))).))	chr1:78435343-78435614(-)$1	1	65	95	20.0308
(((((((...............))))))))	chr15:77242025-77242307(+)$1	1	225	255	19.3398
(((.((((...........)))).))))))	chr16:56643189-56643481(+)$1	1	234	264	18.3313
(((((((.............))))))))..	chr8:101715417-101715639(-)$1	1	28	58	18.5651
(((((.(((..........)))))))))).	chr10:74035222-74035599(+)$1	1	199	229	15.0404
(((((((...............))))))).	chr11:85989505-85989841(+)$1	1	63	93	19.4668
..(((((............)))))....))	chrX:123234620-123234884(+)$1	1	162	192	21.0753
((.((((..............)))))))))	chr10:22032241-22032553(+)$1	1	159	189	19.9808
((((.....................)))).	chr16:4307125-4307413(-)$1	1	84	114	16.6147
(((................)))...)))))	chr17:34171869-34172143(+)$1	1	236	266	21.6567
((.(((((...........))))).))).)	chr5:179047168-179047424(-)$1	1	106	136	19.6419
(((................)))).))))))	chr1:78435236-78435486(-)$1	1	172	202	19.5257
.((((((............))))))..)))	chr1:150237738-150238028(-)$1	1	195	225	20.5567
((((..((...........))..)))))).	chr5:96365744-96365999(+)$1	1	129	159	17.0041
...................))).)))).))	chr5:179046402-179046681(-)$1	1	45	75	17.3237
(((((((............).)))))))..	chr12:89984431-89984714(-)$1	1	203	233	23.4240
(((((((.......................	chr17:38544691-38544930(-)$1	1	158	188	16.6777
(((................)))))..((.(	chr20:45838945-45839220(-)$1	1	26	56	17.9601
((((((...............))))...))	chr7:26238595-26238882(-)$1	1	221	251	17.4855
...................))).)))))))	chr1:53692502-53692756(-)$1	1	68	98	18.5831
(((((((...............))))))).	chr9:135973042-135973335(-)$1	1	115	145	18.7172
(((((((............)))))))))).	chr12:25361984-25362233(-)$1	1	102	132	21.9316
(((..................)))))))).	chr4:174252814-174253092(-)$1	1	238	268	17.5946
.((((..............)))).))))..	chr4:78088074-78088336(+)$1	1	59	89	20.3054
..(((((............)))))...)))	chr1:203823020-203823281(+)$1	1	10	40	22.2086
(((((((............))))))))((.	chr17:56078635-56078908(-)$1	1	170	200	19.4925
((((((((...........)))))))))))	chr15:34671260-34671628(-)$1	1	299	329	19.9612
(((((((............))))))))...	chr17:56078570-56078822(-)$1	1	84	114	17.6424
(.(((..................)))))))	chr1:20978635-20978894(-)$1	1	138	168	17.9673
((.((((..............)))))))..	chr3:179342046-179342300(+)$1	1	72	102	20.7412
((((((((...........)))))).))))	chr6:43753926-43754176(+)$1	1	146	176	17.8127
(((((((.............))))))))))	chr8:101715439-101715686(-)$1	1	75	105	22.1746
(.(((..................))).)))	chr8:23429807-23430070(+)$1	1	156	186	18.6816
((.(((.............))).)))))).	chr2:68405914-68406198(-)$1	1	111	141	21.0904
.(((((.............))))).))).)	chr7:932895-933213(+)$1	1	250	280	21.1588
...................))).)))))))	chr8:128753520-128753767(+)$1	1	216	246	18.5831
.((((((.............))))))..))	chr11:65194922-65195144(+)$1	1	177	207	20.2451
.((((((...........)))))).)))))	chr19:34883041-34883257(+)$1	1	30	60	17.9763
(((((((.............))))))))))	chr14:35870988-35871277(-)$1	1	115	145	22.1746
((..(((..............)))..))).	chr6:31698288-31698539(-)$1	1	70	100	21.0523
(((((((...........))))))))..))	chr3:33910861-33911121(+)$1	1	185	215	16.3961
...................))))))).)))	chr11:47491731-47491997(-)$1	1	142	172	18.1605
((((((.(...........))))))..)))	chr16:2821252-2821486(+)$1	1	47	77	19.1834
(((((((............)))))).....	chr6:17615241-17615496(-)$1	1	122	152	19.0807
(..................))))))....)	chr8:101734082-101734294(-)$1	1	139	169	17.1771
...................))).)))).))	chr5:179046547-179046837(-)$1	1	201	231	17.3237
(((((.(............).))))))...	chr19:10406306-10406614(+)$1	1	75	105	18.8648
(((((((...........))))))))....	chr17:56050985-56051202(-)$1	1	79	109	17.2202
...................)))))))))((	chr7:5646097-5646351(+)$1	1	154	184	17.3032

#PSSM
h : 0.18	g : 0.15	^ : 0.12	f : 0.09	e : 0.09	c : 0.09	[ : 0.06	" : 0.04	= : 0.04	d : 0.04	! : 0.03	# : 0.01	+ : 0.01	
h : 0.18	g : 0.15	^ : 0.13	f : 0.12	e : 0.09	d : 0.07	c : 0.07	" : 0.04	= : 0.04	[ : 0.03	# : 0.01	! : 0.01	
h : 0.16	g : 0.15	^ : 0.13	f : 0.10	[ : 0.09	e : 0.09	d : 0.07	c : 0.06	= : 0.04	" : 0.03	# : 0.01	! : 0.01	
h : 0.15	g : 0.15	^ : 0.15	d : 0.12	e : 0.10	f : 0.10	c : 0.06	= : 0.04	y : 0.04	# : 0.01	[ : 0.01	! : 0.01	
^ : 0.16	g : 0.15	h : 0.13	d : 0.12	e : 0.10	c : 0.09	f : 0.09	= : 0.04	y : 0.04	[ : 0.01	! : 0.01	
^ : 0.21	g : 0.13	h : 0.12	e : 0.09	d : 0.09	c : 0.07	f : 0.07	= : 0.04	y : 0.04	w : 0.03	[ : 0.03	b : 0.01	! : 0.01	
^ : 0.23	g : 0.12	h : 0.10	d : 0.07	f : 0.07	e : 0.06	c : 0.06	= : 0.04	y : 0.04	x : 0.03	b : 0.03	w : 0.03	a : 0.03	v : 0.03	[ : 0.01	
^ : 0.24	u : 0.15	v : 0.12	x : 0.10	t : 0.07	y : 0.07	w : 0.07	e : 0.03	c : 0.03	d : 0.01	b : 0.01	= : 0.01	f : 0.01	a : 0.01	
^ : 0.24	t : 0.20	u : 0.15	v : 0.12	x : 0.10	y : 0.07	w : 0.07	c : 0.01	
^ : 0.24	t : 0.20	u : 0.15	v : 0.12	x : 0.10	y : 0.07	w : 0.07	s : 0.01	
^ : 0.24	t : 0.20	u : 0.15	v : 0.12	x : 0.10	y : 0.07	w : 0.07	s : 0.01	
^ : 0.24	t : 0.20	u : 0.15	v : 0.12	x : 0.10	y : 0.07	w : 0.07	s : 0.01	
^ : 0.24	t : 0.20	u : 0.15	v : 0.12	x : 0.10	y : 0.07	w : 0.07	s : 0.01	
^ : 0.24	t : 0.20	u : 0.15	v : 0.12	x : 0.10	y : 0.07	w : 0.07	s : 0.01	
^ : 0.24	t : 0.20	u : 0.15	v : 0.12	x : 0.10	y : 0.07	w : 0.07	s : 0.01	
^ : 0.24	t : 0.20	u : 0.15	v : 0.12	x : 0.10	y : 0.07	w : 0.07	s : 0.01	
^ : 0.24	t : 0.20	u : 0.15	v : 0.12	x : 0.10	y : 0.07	w : 0.07	s : 0.01	
^ : 0.24	t : 0.20	u : 0.15	v : 0.12	x : 0.10	y : 0.07	w : 0.07	s : 0.01	
^ : 0.24	u : 0.15	t : 0.12	v : 0.12	x : 0.10	y : 0.07	w : 0.07	h : 0.04	d : 0.01	s : 0.01	f : 0.01	
c : 0.12	e : 0.10	x : 0.10	^ : 0.10	v : 0.09	f : 0.09	h : 0.09	d : 0.06	g : 0.04	w : 0.04	a : 0.04	y : 0.03	= : 0.03	b : 0.01	
e : 0.12	h : 0.12	c : 0.12	x : 0.10	^ : 0.10	f : 0.10	g : 0.07	d : 0.06	w : 0.04	b : 0.03	y : 0.03	] : 0.03	= : 0.03	
h : 0.15	c : 0.13	e : 0.12	f : 0.12	d : 0.10	g : 0.09	^ : 0.09	x : 0.07	y : 0.03	= : 0.03	b : 0.01	2 : 0.01	
h : 0.15	g : 0.15	e : 0.12	] : 0.12	f : 0.12	^ : 0.09	d : 0.09	= : 0.04	c : 0.03	y : 0.03	3 : 0.01	2 : 0.01	
g : 0.21	h : 0.16	f : 0.15	e : 0.13	d : 0.07	c : 0.06	^ : 0.04	= : 0.04	] : 0.04	b : 0.03	3 : 0.01	
g : 0.21	h : 0.16	f : 0.13	d : 0.12	c : 0.07	= : 0.04	] : 0.04	2 : 0.03	e : 0.03	^ : 0.03	3 : 0.03	b : 0.03	4 : 0.01	: : 0.01	
g : 0.21	h : 0.18	c : 0.10	d : 0.09	= : 0.07	2 : 0.06	f : 0.06	4 : 0.04	b : 0.03	3 : 0.03	e : 0.01	i : 0.01	^ : 0.01	: : 0.01	] : 0.01	0 : 0.01	
g : 0.16	h : 0.13	c : 0.10	d : 0.09	f : 0.07	4 : 0.07	= : 0.07	2 : 0.06	] : 0.04	b : 0.04	e : 0.03	3 : 0.03	i : 0.01	^ : 0.01	0 : 0.01	
g : 0.18	c : 0.10	h : 0.09	4 : 0.09	] : 0.07	= : 0.07	d : 0.07	f : 0.06	e : 0.06	b : 0.03	: : 0.03	2 : 0.03	i : 0.01	a : 0.01	^ : 0.01	3 : 0.01	0 : 0.01	
g : 0.16	= : 0.10	c : 0.09	f : 0.07	h : 0.07	4 : 0.07	e : 0.07	: : 0.04	d : 0.04	5 : 0.03	i : 0.03	2 : 0.03	] : 0.03	3 : 0.03	b : 0.03	^ : 0.01	[ : 0.01	0 : 0.01	
: : 0.13	g : 0.10	e : 0.09	= : 0.09	2 : 0.07	f : 0.06	c : 0.06	d : 0.04	h : 0.04	4 : 0.04	[ : 0.03	5 : 0.03	i : 0.03	3 : 0.03	b : 0.03	] : 0.01	> : 0.01	a : 0.01	^ : 0.01	0 : 0.01	

#score	1236.2956897099075
#seq	65
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_UTR_m2_run2.txt

#BEAR
b[bb[ccciiiiiiiiimmmmiiiiiiiii4444ccc	chrX:53710800-53711108(-)$1	308	160	197	13.7217
ggffffff[adddd[bbmmmmbb]dddd333a]ffff	chr1:36787647-36787927(+)$1	280	180	217	14.5634
eeeee==========[ammmma]==========6666	chr16:28877056-28877291(+)$1	235	127	164	12.9036
!bb"""cccbb!!bbbbmmmmbb]bb22bb]ccc333	chr7:1579959-1580203(+)$1	244	152	189	13.3184
###dddd[ccc[cccbbmmmmbb]ccc]cccddddff	chr3:128209211-128209433(+)$1	222	92	129	14.1918
dd[gggggggffffffammmma]ffffff333ggggg	chr11:118781427-118781661(-)$1	234	157	194	13.4839
ffffffff[ccc[ddddmmmmddddccc333ffffff	chr16:89556787-89557033(-)$1	246	27	64	12.3665
$$$ffffff"""cccbbmmmmbb]cccffffff22ii	chr7:148580200-148580448(-)$1	248	74	111	14.4554
b!!iiiiiiiiibb[bbmmmmbb]bb22iiiiiiiii	chr1:202776311-202776604(-)$1	293	219	256	14.9836
eeee[ggggggg!!cccmmmmccc]ggggggg]eeee	chr19:1879451-1879742(-)$1	291	5	42	14.9923
ffffff!!ccc!!bboooooobb22ccc]ffffff]c	chr14:74226386-74226671(-)$1	285	223	260	11.7872
!bbgggggggeeeeebbmmmmbb22eeeee333gggg	chr2:61764148-61764394(-)$1	246	155	192	15.3799
c:::gggggggccccccmmmmccc]ccc]gggggggc	chr18:3450140-3450394(+)$1	254	175	212	12.1995
##ccc####ccc"""bbmmmmbb333ccc4444ccc3	chr19:1472446-1472694(-)$1	248	53	90	17.1285
:===========!!cccnnnnnccc]===========	chr18:3451874-3452133(+)$1	259	85	122	11.7489
eee"""dddd[ccc[bbmmmmbb]cccdddd]eeeee	chr19:1104367-1104633(+)$1	266	129	166	14.0343
ddddccc"""bb"""bbmmmmbb333bb22ccc]ddd	chr19:49964841-49965122(+)$1	281	170	207	14.7082
cc[cccccc[ccc[cccmmmmccc333cccccc6666	chr16:28875101-28875346(+)$1	245	157	194	13.1968
gggg[accc[bb[a[bbmmmmbba]bb]ccc]a]ggg	chr1:1208551-1208814(-)$1	263	89	126	15.6461
eee[a[dddd[ccc!!bblllbb22ccc]dddd]aee	chr7:143078835-143079107(+)$1	272	88	125	11.3471
gggggggeeeee"""bbnnnnnbb]eeeee4444ggg	chr1:36789531-36789831(+)$1	300	205	242	12.1623
cffffffffffff[cccmmmmccc]ffffffgggggg	chr22:50050344-50050592(-)$1	248	39	76	14.0606
cca[ffffffa[cccbbmmmmbb]ccc]a]ffffff]	chr17:7477031-7477345(+)$1	314	167	204	15.3463
======eeeee[cccooooooccceeeee22======	chr19:40790501-40790796(-)$1	295	151	188	11.4387
cggggggg[ccc!!cccmmmmccc]ccc22ggggggg	chr20:62566550-62566821(+)$1	271	211	248	15.5992
eeee[eeeee[bb[cccmmmmccc]bb]eeeee]eee	chr7:924227-924464(+)$1	237	74	111	13.1522
!bbgggggggeeeeebbmmmmbb22eeeee333gggg	chr2:61764083-61764348(-)$1	265	109	146	15.3799
=========accc!!bbmmmmbb22ccc]a]======	chr12:133337679-133337982(-)$1	303	45	82	17.7384
ffffbbggggggg!!bbmmmmbb4444ggggggg]bb	chr9:139249198-139249493(+)$1	295	33	70	15.4001
dddd!!a[gggggggbbmmmmbb]ggggggga]dddd	chr14:105259497-105259746(-)$1	249	136	173	14.8484
c[gggggggbb[bb[bbmmmmbb]bb333bb]ggggg	chr1:36789969-36790219(+)$1	250	108	145	14.5650
gggiiiiiiiii"""bbmmmmbb]iiiiiiiii::::	chr8:67976688-67976975(+)$1	287	133	170	13.0883
dd$$$$$ffffff[cccmmmmccc]ffffff4444dd	chr7:923924-924176(+)$1	252	16	53	13.3027
ffffff"""a[ccc[bbmmmmbb]ccc]a333fffff	chr20:62330650-62330905(-)$1	255	206	243	16.0900
[ffffff[bb[a!!cccmmmmccc22a]bbffffffd	chr1:228270760-228271025(+)$1	265	90	127	13.0109
eeeee[eeeee####bbmmmmbb4444eeeeeeeeee	chr19:1472134-1472390(-)$1	256	204	241	14.7715
b!!ccc"""ffffffbbmmmmbb]ffffff4444ccc	chr19:5140923-5141210(+)$1	287	42	79	15.0460
iiiiiiiii!!bb[cccmmmmccc]bb]iiiiiiiii	chr17:7477339-7477619(+)$1	280	170	207	14.7901
"""eeeee[ccc!!cccmmmmccc]ccc333eeeee3	chr3:49045520-49045787(+)$1	267	107	144	15.2639
gggg[ccc[ccc[ddddmmmmdddd]ccc]ccc]ggg	chr2:191513905-191514192(+)$1	287	239	276	12.9067
dddd!!bb[eeeee[bbmmmmbb]eeeee]bb22ddd	chr21:46494479-46494704(+)$1	225	20	57	12.7356
dd$$$$$ffffff[cccmmmmccc]ffffff4444dd	chr7:923820-924052(+)$1	232	120	157	13.3027
bbccc[ffffff"""bbmmmmbb22ffffffccc333	chr22:19705625-19705867(+)$1	242	101	138	15.7094
g[eeeee"""dddd[bbmmmmbbdddd]eeeee4444	chr22:50015919-50016150(-)$1	231	149	186	13.6133
:bb[dddd[ccc"""bbmmmmbb333ccc]dddd]bb	chr1:228270388-228270677(+)$1	289	205	242	14.1642
=========[ggggggglllggggggg==========	chr7:1577766-1578016(+)$1	250	45	82	12.2850
!!a!!ggggggg!!cccmmmmcccggggggg22a22b	chr19:16187719-16188000(+)$1	281	233	270	14.6209
dd!!bb!!eeeee[cccmmmmccc]eeeee22bb444	chr12:133295286-133295547(+)$1	261	211	248	12.8779
cc"""eeeeebb"""bbmmmmbb333bb]eeeee]cc	chr16:448097-448371(+)$1	274	169	206	15.5888
ddbb[eeeeeccc[cccmmmmccc]ccc]eeeee]bb	chr1:155532314-155532655(-)$1	341	249	286	13.5530
ffffff[ffffff!!bbmmmmbbffffffffffffii	chr16:2580595-2580934(+)$1	339	264	301	14.6845
fffff!!eeeeecccooooooccc]eeeee]ffffff	chr21:46934430-46934713(-)$1	283	149	186	10.7304

#otherMatches

#Seq PSSM
CGGUGGCUCGGUUACUGACUGCAGUAGCCGCGGAGGC	chrX:53710800-53711108(-)$1	308	160	197	13.7217
GUGGGGUAGCUCUGAGCUCAUGUGCAGGUCCGGUACC	chr1:36787647-36787927(+)$1	280	180	217	14.5634
GGAGAGGGAAGGGAGGUGUUGGGCUCCCUUCCCCAUU	chr16:28877056-28877291(+)$1	235	127	164	12.9036
AGUCCAAGCGCAGGCCCCUCGGGCGCAGGCAGCUCAC	chr7:1579959-1580203(+)$1	244	152	189	13.3184
UGGGGUUGCCUUCCUCGACAACGCAGGCAGGAGCCGG	chr3:128209211-128209433(+)$1	222	92	129	14.1918
AGCUCUUGCCGGCUGGCGCGCGCCCAGCCCCUGGCGG	chr11:118781427-118781661(-)$1	234	157	194	13.4839
CCGGCUCCCGCCGCAGCCGCCGCUGGGUCCUGGAGCC	chr16:89556787-89557033(-)$1	246	27	64	12.3665
CCCCAAAAAUCUGUGCCACAGGGUUACUUUUUGAAAG	chr7:148580200-148580448(-)$1	248	74	111	14.4554
GAGGCCUGGGCUGUGCUGGUGGGGAUGGGGUCCGGGC	chr1:202776311-202776604(-)$1	293	219	256	14.9836
GCUGAGGUGUGGCCAGGCGGUCCUCCCACACCCUGGC	chr19:1879451-1879742(-)$1	291	5	42	14.9923
GCCGGCGGCCGAGGCCUGCACGCGGCGGGGCCGGCGA	chr14:74226386-74226671(-)$1	285	223	260	11.7872
GGAUGGGGGAGGGAGGGGCUGCCGACUCCCUGUUCCU	chr2:61764148-61764394(-)$1	246	155	192	15.3799
CAAGGAGCGGGCGCCUGGGAUCAGAGCGUCCUGUUUA	chr18:3450140-3450394(+)$1	254	175	212	12.1995
CAGGGGAUGGAGAAGGCGAAAGUGAGCUCAGGACUCG	chr19:1472446-1472694(-)$1	248	53	90	17.1285
GGGCUCUGUGUUUCGAGGAUGGUUCUAGCGCAGAGCC	chr18:3451874-3452133(+)$1	259	85	122	11.7489
GUUGAGGGCCACGGCGGGGCGUCUCCGGGCCGAGCGG	chr19:1104367-1104633(+)$1	266	129	166	14.0343
CUCCCAGCCUGGAAUCCGGAAGGUGGCCUUCUGCGGA	chr19:49964841-49965122(+)$1	281	170	207	14.7082
AGAUGCAGGUGGGACCGGAACCGGAACCCCCCUCUUC	chr16:28875101-28875346(+)$1	245	157	194	13.1968
GGGGAGGGCUGCCGUCGAGCCCGCCGUCGCCUCGCCC	chr1:1208551-1208814(-)$1	263	89	126	15.6461
CAGUCGUUUCGGGAAUUUGGGGAUGUCUGGAAAGGUU	chr7:143078835-143079107(+)$1	272	88	125	11.3471
CCAGGGCCCAGGCUUGAAUGUGUCCCCUGGCCGAGCU	chr1:36789531-36789831(+)$1	300	205	242	12.1623
GACUCCUUAGGGACGAUUCUGAUUUUCCCUGGAGCUG	chr22:50050344-50050592(-)$1	248	39	76	14.0606
CGGGACUUCCAGCGCGCUGGUGCUGCGGUGGGAGGUG	chr17:7477031-7477345(+)$1	314	167	204	15.3463
CCCAACUGUGGCUGGGUUAUAUCACCACGGCGUUGGG	chr19:40790501-40790796(-)$1	295	151	188	11.4387
CCCCCACCAGCAUUGGCCUCUGCUCUGCAGGGUGGGG	chr20:62566550-62566821(+)$1	271	211	248	15.5992
GUUAACUGAGCAUCCAACCCUUUGCGUUCUCGGCUGG	chr7:924227-924464(+)$1	237	74	111	13.1522
GGAUGGGGGAGGGAGGGGCUGCCGACUCCCUGUUCCU	chr2:61764083-61764348(-)$1	265	109	146	15.3799
cggcgggggcccggcgaggcguuagcggagacucuug	chr12:133337679-133337982(-)$1	303	45	82	17.7384
UCAUUCACACAGCAGACACCGGUGAGGGCUGUGUAGG	chr9:139249198-139249493(+)$1	295	33	70	15.4001
UCCCAGGAUCCAUGGGUAGGAACACCAUGGACAGGGA	chr14:105259497-105259746(-)$1	249	136	173	14.8484
GACCUCCCCUCCCUUGCUGGAGCUAGAAUGAGGGGGA	chr1:36789969-36790219(+)$1	250	108	145	14.5650
AUUCGCUGCCCCGGAGCGGGGGCAGGGGCAGUGGCUC	chr8:67976688-67976975(+)$1	287	133	170	13.0883
CUCUGAGUCAGUCAUGUCCCUGCAGGACUGGAACUAG	chr7:923924-924176(+)$1	252	16	53	13.3027
UCCUGGGAGGAGCUGCUGGGAAGGGGCAUGAGUCAGG	chr20:62330650-62330905(-)$1	255	206	243	16.0900
GCCCGCGCGUGGACGGUUGGGAUUAGCGGCCGCGGGG	chr1:228270760-228271025(+)$1	265	90	127	13.0109
CAUGGAUGGGGACAGCAAGUGUGAGACCCCCGCUGUG	chr19:1472134-1472390(-)$1	256	204	241	14.7715
GGACACAGUGCCUGGUGUUGACAUUCAGGCUUGCGUG	chr19:5140923-5141210(+)$1	287	42	79	15.0460
GCCCGGCUGUCAGGAUUUCUGAGUGCUUCGGUCGGGC	chr17:7477339-7477619(+)$1	280	170	207	14.7901
AGGUGUGGAGGUCCCUCCAAGGAGAACCGGGUCGCAA	chr3:49045520-49045787(+)$1	267	107	144	15.2639
GGCUGAGCGGCCACGGGCGAACUUGGGGCGGCUGAGU	chr2:191513905-191514192(+)$1	287	239	276	12.9067
gcugaggcggccguggcggcggcggcggcggcggcgg	chr21:46494479-46494704(+)$1	225	20	57	12.7356
CUCUGAGUCAGUCAUGUCCCUGCAGGACUGGAACUAG	chr7:923820-924052(+)$1	232	120	157	13.3027
ccgcgUGCAGGACCCGGUCGUCCCCUCCUGCUGUCCU	chr22:19705625-19705867(+)$1	242	101	138	15.7094
CUACCAGCACGGUCACUUCUCAGGGCCUUUGGUCCCC	chr22:50015919-50016150(-)$1	231	149	186	13.6133
agggccgggccgggggcggacgcagacgggccgggcu	chr1:228270388-228270677(+)$1	289	205	242	14.1642
GAGGGCUCAUGCCGGGGAUGCUUUGGCUGGGUUUUUC	chr7:1577766-1578016(+)$1	250	45	82	12.2850
GACAGGGAUUUCGACGGGGGACCGGGGAUCUGGGGAG	chr19:16187719-16188000(+)$1	281	233	270	14.6209
UGCUGCUCGGGCUGCUCCCUCGGGGGGCCCUUGUCCC	chr12:133295286-133295547(+)$1	261	211	248	12.8779
CGACAGGCCUUGAAACUCCACAGCAGCACAGGCCCCG	chr16:448097-448371(+)$1	274	169	206	15.5888
UCGUACGCGUGCGGGCGGGCGUGCGCGCUACGCGGAC	chr1:155532314-155532655(-)$1	341	249	286	13.5530
GAGGUGUGAGGUGCAGGGAUACCCACCUCUGCCUUGA	chr16:2580595-2580934(+)$1	339	264	301	14.6845
GAGGCCAGGAGAGGCGUCCCAGCCUUCUCCCGCCUCC	chr21:46934430-46934713(-)$1	283	149	186	10.7304

#DB
(.((.((((((((((((....)))))))))....)))	chrX:53710800-53711108(-)$1	1	160	197	13.7217
((((((((.(((((.((....)).))))...).))))	chr1:36787647-36787927(+)$1	1	180	217	14.5634
(((((((((((((((.(....).))))))))))....	chr16:28877056-28877291(+)$1	1	127	164	12.9036
.((...(((((..((((....)).))..)).)))...	chr7:1579959-1580203(+)$1	1	152	189	13.3184
...((((.(((.(((((....)).))).)))))))))	chr3:128209211-128209433(+)$1	1	92	129	14.1918
((.((((((((((((((....).))))))...)))))	chr11:118781427-118781661(-)$1	1	157	194	13.4839
((((((((.(((.((((....)))))))...))))))	chr16:89556787-89557033(-)$1	1	27	64	12.3665
...((((((...(((((....)).)))))))))..))	chr7:148580200-148580448(-)$1	1	74	111	14.4554
(..(((((((((((.((....)).))..)))))))))	chr1:202776311-202776604(-)$1	1	219	256	14.9836
((((.(((((((..(((....))).))))))).))))	chr19:1879451-1879742(-)$1	1	5	42	14.9923
((((((..(((..((......))..))).)))))).)	chr14:74226386-74226671(-)$1	1	223	260	11.7872
.((((((((((((((((....))..)))))...))))	chr2:61764148-61764394(-)$1	1	155	192	15.3799
)...(((((((((((((....))).))).)))))))(	chr18:3450140-3450394(+)$1	1	175	212	12.1995
..(((....(((...((....))...)))....))).	chr19:1472446-1472694(-)$1	1	53	90	17.1285
.(((((((((((..(((.....))).)))))))))))	chr18:3451874-3452133(+)$1	1	85	122	11.7489
(((...((((.(((.((....)).))))))).)))))	chr19:1104367-1104633(+)$1	1	129	166	14.0343
(((((((...((...((....))...))..))).)))	chr19:49964841-49965122(+)$1	1	170	207	14.7082
((.((((((.(((.(((....)))...))))))....	chr16:28875101-28875346(+)$1	1	157	194	13.1968
((((.((((.((.(.((....))).)).))).).)))	chr1:1208551-1208814(-)$1	1	89	126	15.6461
(((.(.((((.(((..((...))..))).)))).)))	chr7:143078835-143079107(+)$1	1	88	125	11.3471
((((((((((((...((.....)).)))))....)))	chr1:36789531-36789831(+)$1	1	205	242	12.1623
)))))))((((((.(((....))).))))))((((((	chr22:50050344-50050592(-)$1	1	39	76	14.0606
(((.(((((((.(((((....)).))).).)))))).	chr17:7477031-7477345(+)$1	1	167	204	15.3463
(((((((((((.(((......))))))))..))))))	chr19:40790501-40790796(-)$1	1	151	188	11.4387
((((((((.(((..(((....))).)))..)))))))	chr20:62566550-62566821(+)$1	1	211	248	15.5992
((((.(((((.((.(((....))).)).))))).)))	chr7:924227-924464(+)$1	1	74	111	13.1522
.((((((((((((((((....))..)))))...))))	chr2:61764083-61764348(-)$1	1	109	146	15.3799
(((((((((((((..((....))..))).).))))))	chr12:133337679-133337982(-)$1	1	45	82	17.7384
(((((((((((((..((....))....))))))).))	chr9:139249198-139249493(+)$1	1	33	70	15.4001
((((..(.(((((((((....)).)))))))).))))	chr14:105259497-105259746(-)$1	1	136	173	14.8484
(.(((((((((.((.((....)).))...)).)))))	chr1:36789969-36790219(+)$1	1	108	145	14.5650
)))(((((((((...((....)).)))))))))....	chr8:67976688-67976975(+)$1	1	133	170	13.0883
((.....((((((.(((....))).))))))....))	chr7:923924-924176(+)$1	1	16	53	13.3027
((((((...(.(((.((....)).))).)...)))))	chr20:62330650-62330905(-)$1	1	206	243	16.0900
.((((((.((.(..(((....)))..).)))))))))	chr1:228270760-228271025(+)$1	1	90	127	13.0109
(((((.(((((....((....))....))))))))))	chr19:1472134-1472390(-)$1	1	204	241	14.7715
(..(((...((((((((....)).))))))....)))	chr19:5140923-5141210(+)$1	1	42	79	15.0460
(((((((((..((.(((....))).)).)))))))))	chr17:7477339-7477619(+)$1	1	170	207	14.7901
...(((((.(((..(((....))).)))...))))).	chr3:49045520-49045787(+)$1	1	107	144	15.2639
((((.(((.(((.((((....)))).))).))).)))	chr2:191513905-191514192(+)$1	1	239	276	12.9067
((((..((.(((((.((....)).))))).))..)))	chr21:46494479-46494704(+)$1	1	20	57	12.7356
((.....((((((.(((....))).))))))....))	chr7:923820-924052(+)$1	1	120	157	13.3027
(((((.((((((...((....))..)))))))))...	chr22:19705625-19705867(+)$1	1	101	138	15.7094
(.(((((...((((.((....)))))).)))))....	chr22:50015919-50016150(-)$1	1	149	186	13.6133
.((.((((.(((...((....))...))).)))).))	chr1:228270388-228270677(+)$1	1	205	242	14.1642
(((((((((.(((((((...)))))))))))))))))	chr7:1577766-1578016(+)$1	1	45	82	12.2850
..(..(((((((..(((....))))))))))..)..)	chr19:16187719-16188000(+)$1	1	233	270	14.6209
((..((..(((((.(((....))).)))))..))...	chr12:133295286-133295547(+)$1	1	211	248	12.8779
((...(((((((...((....))...)).))))).))	chr16:448097-448371(+)$1	1	169	206	15.5888
((((.((((((((.(((....))).))).))))).))	chr1:155532314-155532655(-)$1	1	249	286	13.5530
((((((.((((((..((....))))))))))))))((	chr16:2580595-2580934(+)$1	1	264	301	14.6845
(((((..((((((((......))).))))).))))))	chr21:46934430-46934713(-)$1	1	149	186	10.7304

#PSSM
d : 0.15	c : 0.13	g : 0.11	e : 0.11	f : 0.11	b : 0.07	! : 0.07	= : 0.05	# : 0.03	: : 0.03	$ : 0.01	[ : 0.01	i : 0.01	" : 0.01	
d : 0.15	f : 0.15	g : 0.11	e : 0.11	b : 0.09	= : 0.07	[ : 0.05	! : 0.05	c : 0.05	# : 0.03	$ : 0.01	: : 0.01	i : 0.01	" : 0.01	
f : 0.17	e : 0.13	b : 0.11	g : 0.11	= : 0.07	$ : 0.05	! : 0.05	d : 0.05	[ : 0.03	c : 0.03	a : 0.03	" : 0.03	# : 0.01	: : 0.01	i : 0.01	
f : 0.19	g : 0.15	e : 0.11	d : 0.07	c : 0.07	= : 0.07	" : 0.05	i : 0.05	[ : 0.05	b : 0.03	$ : 0.03	! : 0.03	: : 0.01	
f : 0.19	g : 0.13	[ : 0.11	c : 0.09	e : 0.07	= : 0.07	" : 0.05	i : 0.05	! : 0.05	d : 0.03	b : 0.03	$ : 0.03	a : 0.01	
f : 0.17	g : 0.17	c : 0.09	= : 0.09	e : 0.09	i : 0.05	[ : 0.05	! : 0.05	" : 0.03	d : 0.03	b : 0.03	$ : 0.03	# : 0.01	a : 0.01	
g : 0.19	f : 0.13	e : 0.13	c : 0.11	= : 0.07	d : 0.07	i : 0.05	! : 0.05	$ : 0.03	" : 0.03	# : 0.01	a : 0.01	b : 0.01	[ : 0.01	
f : 0.17	g : 0.17	e : 0.15	c : 0.09	= : 0.07	" : 0.07	[ : 0.05	i : 0.05	d : 0.05	! : 0.03	# : 0.01	b : 0.01	
g : 0.17	e : 0.15	[ : 0.13	f : 0.13	c : 0.09	i : 0.07	= : 0.07	" : 0.07	d : 0.03	# : 0.01	b : 0.01	
e : 0.17	c : 0.15	g : 0.15	f : 0.13	i : 0.05	a : 0.05	b : 0.05	" : 0.05	[ : 0.05	= : 0.03	d : 0.03	! : 0.01	
c : 0.21	e : 0.15	f : 0.13	g : 0.11	b : 0.09	[ : 0.09	i : 0.05	d : 0.03	= : 0.03	" : 0.01	a : 0.01	! : 0.01	
c : 0.24	f : 0.13	e : 0.11	g : 0.09	b : 0.09	[ : 0.07	i : 0.05	d : 0.03	= : 0.03	! : 0.03	" : 0.01	a : 0.01	# : 0.01	
c : 0.23	! : 0.15	" : 0.13	f : 0.11	b : 0.07	e : 0.07	[ : 0.05	g : 0.05	d : 0.03	i : 0.01	= : 0.01	# : 0.01	
c : 0.17	! : 0.17	[ : 0.15	" : 0.13	d : 0.07	b : 0.07	e : 0.05	f : 0.03	g : 0.03	i : 0.01	= : 0.01	a : 0.01	# : 0.01	
c : 0.38	[ : 0.15	" : 0.13	! : 0.07	b : 0.03	f : 0.03	d : 0.03	e : 0.03	g : 0.03	i : 0.01	= : 0.01	# : 0.01	
b : 0.51	c : 0.28	o : 0.05	d : 0.03	i : 0.01	[ : 0.01	f : 0.01	! : 0.01	g : 0.01	
b : 0.53	c : 0.28	o : 0.05	a : 0.03	d : 0.03	i : 0.01	g : 0.01	
m : 0.86	o : 0.05	n : 0.03	b : 0.01	l : 0.01	
m : 0.86	o : 0.05	n : 0.03	l : 0.03	
m : 0.86	o : 0.05	n : 0.03	l : 0.03	
m : 0.86	o : 0.05	n : 0.03	l : 0.01	g : 0.01	
b : 0.53	c : 0.30	a : 0.03	d : 0.03	n : 0.03	i : 0.01	g : 0.01	
b : 0.55	c : 0.32	] : 0.03	d : 0.03	i : 0.01	g : 0.01	
c : 0.32	] : 0.24	2 : 0.11	3 : 0.07	d : 0.05	f : 0.03	4 : 0.03	i : 0.01	= : 0.01	a : 0.01	b : 0.01	g : 0.01	
] : 0.26	2 : 0.13	c : 0.11	3 : 0.09	d : 0.07	b : 0.05	f : 0.05	g : 0.05	i : 0.03	e : 0.03	4 : 0.03	= : 0.01	
c : 0.24	f : 0.13	e : 0.13	b : 0.11	3 : 0.09	g : 0.07	i : 0.03	d : 0.03	] : 0.03	4 : 0.03	= : 0.01	2 : 0.01	
c : 0.30	f : 0.13	e : 0.13	b : 0.09	g : 0.07	i : 0.03	d : 0.03	= : 0.03	2 : 0.03	3 : 0.03	4 : 0.03	a : 0.01	
c : 0.23	] : 0.15	f : 0.15	e : 0.15	g : 0.07	= : 0.05	i : 0.03	d : 0.03	2 : 0.03	b : 0.03	3 : 0.01	
e : 0.19	f : 0.15	c : 0.11	] : 0.11	i : 0.07	3 : 0.07	g : 0.07	= : 0.05	b : 0.03	2 : 0.03	a : 0.03	d : 0.01	
e : 0.19	f : 0.15	3 : 0.09	g : 0.09	i : 0.07	] : 0.07	= : 0.05	b : 0.05	c : 0.05	2 : 0.05	d : 0.03	4 : 0.01	a : 0.01	
f : 0.17	3 : 0.13	g : 0.11	c : 0.09	e : 0.09	4 : 0.07	= : 0.05	] : 0.05	i : 0.05	d : 0.05	2 : 0.03	b : 0.03	
f : 0.13	4 : 0.11	e : 0.11	= : 0.09	c : 0.09	g : 0.09	3 : 0.07	d : 0.05	i : 0.05	] : 0.05	a : 0.03	2 : 0.03	b : 0.01	
f : 0.15	e : 0.13	4 : 0.11	g : 0.11	= : 0.09	c : 0.09	] : 0.05	d : 0.05	i : 0.05	3 : 0.03	2 : 0.03	a : 0.01	b : 0.01	
f : 0.15	g : 0.15	4 : 0.11	e : 0.11	] : 0.09	= : 0.07	c : 0.05	d : 0.05	6 : 0.03	2 : 0.03	i : 0.03	: : 0.01	a : 0.01	b : 0.01	
g : 0.19	f : 0.15	e : 0.09	d : 0.07	= : 0.07	] : 0.07	4 : 0.07	c : 0.05	6 : 0.03	3 : 0.03	2 : 0.03	i : 0.03	a : 0.01	: : 0.01	
g : 0.19	f : 0.13	e : 0.11	d : 0.09	c : 0.07	i : 0.07	= : 0.07	b : 0.05	6 : 0.03	3 : 0.03	4 : 0.03	] : 0.01	: : 0.01	2 : 0.01	
g : 0.17	d : 0.11	c : 0.09	f : 0.09	e : 0.09	3 : 0.07	i : 0.07	= : 0.07	b : 0.07	6 : 0.03	4 : 0.03	] : 0.01	: : 0.01	

#score	727.986788521052
#seq	52
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_transcript_m2_run2.txt

#BEAR
ffff!!ccc!!aooooooa22ccc22fff	chr9:117128811-117129093(-)$1	282	245	274	10.9871
b[ggggggg[ccclllccc333ggggggg	chr19:55557377-55557646(+)$1	269	22	51	10.6348
ffff[a[eeeeeooooooeeeee]affff	chr15:41583458-41583744(+)$1	286	109	138	10.2294
$$$$dddd[cccooooooccc]dddd333	chr11:5478499-5478769(-)$1	270	215	244	11.8680
h!!dddd!!cccooooooccc333dddd2	chr18:1307991-1308256(-)$1	265	50	79	12.1505
""dddd!!a[bboooooobba22dddd33	chrX:70628278-70628528(+)$1	250	152	181	10.7739
f!!a[gggggggooooooggggggg]a22	chr3:152095624-152095909(+)$1	285	248	277	13.6699
:============================	chr16:29679142-29679391(+)$1	249	56	85	11.3163
:============================	chr10:70194936-70195211(-)$1	275	6	35	11.3163
!bbddddccc[aooooooa]ccc]dddd]	chr19:8468334-8468593(+)$1	259	14	43	11.1695
b"""dddd[cccoooooocccddddbbdd	chr7:99952154-99952395(+)$1	241	107	136	11.0418
dd[ggggggg[bbnnnnnbbgggggggdd	chr1:150593254-150593491(-)$1	237	105	134	9.5973
d####gggggggoooooogggggggdddd	chr2:172016736-172017018(-)$1	282	107	136	13.2053
iiiiiiii[cccnnnnnccc]iiiiiiii	chrX:109417584-109417834(+)$1	250	140	169	12.1569
c[bbiiiiiiiiillliiiiiiiii333b	chr2:132035528-132035796(+)$1	268	46	75	11.2936
iiiiiii[ccc[ammmma]ccc]iiiiii	chr1:143402205-143402458(-)$1	253	102	131	10.9226
ff"""gggggggrrrrrrrrrgggggggf	chr6:32132479-32132773(+)$1	294	158	187	10.8287
ddd!!gggggggooooooggggggg4444	chr15:40344193-40344472(+)$1	279	51	80	13.3438
[==========ppppppp==========b	chr22:21936392-21936686(+)$1	294	193	222	11.6758
[==========rrrrrrrrr=========	chr12:56529959-56530291(+)$1	332	42	71	13.6315
a[ccc[ffffffooooooffffff22ccc	chr16:87430166-87430492(+)$1	326	217	246	10.8699
[ggggggg[cccoooooocccgggggggb	chr15:40985734-40986025(-)$1	291	177	206	14.0594
ggggggg"""bboooooobb]ggggggg2	chr11:9319190-9319471(-)$1	281	207	236	12.8120
e!!ccc[ccc[aooooooacccccc5555	chr17:75352853-75353135(+)$1	282	53	82	9.9646
============ppppppp==========	chr15:88239056-88239329(-)$1	273	164	193	11.9654
g[ccc####cccoooooocccccc]gggg	chr16:29680374-29680584(+)$1	210	99	128	13.1795
####ccc!!cccooooooccc]ccc4444	chr19:10555918-10556180(+)$1	262	162	191	13.6831
gggggg!!cccrrrrrrrrrccc]ggggg	chr19:10846546-10846811(+)$1	265	137	166	10.8867
!!iiiiiiiiiqqqqqqqqiiiiiiiiie	chr15:88201378-88201673(-)$1	295	255	284	10.4041
b[===========mmmm===========]	chr19:10437631-10437885(-)$1	254	1	30	12.7960
a!!a[ddddcccooooooccc]dddd]a2	chr11:66417512-66417788(+)$1	276	103	132	12.0762
ggggg!!ccc!!ccclllccc22cccggg	chr7:150766412-150766706(+)$1	294	41	70	9.2996
:::iiiiiiiiiooooooiiiiiiiii::	chr20:402519-402820(+)$1	301	189	218	10.4738
:===============!!==========!	chr2:198356766-198356983(-)$1	217	1	30	10.6199
!iiiiiiiii[annnnna]iiiiiiiii]	chr20:45853324-45853631(-)$1	307	13	42	12.8337
:ggggggg!!cccnnnnncccggggggg:	chr19:19019095-19019346(-)$1	251	38	67	9.7371
dddd$$$$$cccooooooccc4444dddd	chr22:19486659-19486922(+)$1	263	197	226	10.4298
ffffccc[ddddoooooodddd]ccc]ff	chr17:79807469-79807780(-)$1	311	178	207	10.2910
:::==========nnnnn==========:	chr5:32165698-32166009(-)$1	311	73	102	9.9824
GGGGGgggggggoooooogggggggccco	chr9:37206971-37207210(+)$1	239	62	91	10.5908
dd####ffffffooooooffffffdddde	chr19:47282182-47282462(-)$1	280	61	90	10.3253
cc[eeeee!!bboooooobb]eeeee]cc	chr7:102032121-102032372(+)$1	251	167	196	10.6558
==========[dddd[============[	chr17:80440761-80440995(+)$1	234	23	52	10.1440
!!ffffff[cccooooooccc]ffffff2	chr6:155174431-155174725(+)$1	294	176	205	11.9247
$$$iiiiiiiiinnnnniiiiiiiiiccc	chr1:143451657-143451899(-)$1	242	189	218	11.8584
eeee"""a[cccoooooocccaeeeee::	chr11:107727455-107727713(-)$1	258	134	163	10.0631
[iiiiiiiii[aooooooa]iiiiiiiii	chr5:34698194-34698494(+)$1	300	139	168	15.3525
============ppppppp==========	chrX:53426954-53427219(-)$1	265	24	53	11.9654
========ddddoooooodddd22=====	chr15:66878811-66879034(+)$1	223	158	187	12.8832
ffff"""eeeeeooooooeeeee]fffff	chr3:171481026-171481325(-)$1	299	232	261	10.2745
:==========ppppppp==========e	chr5:65327604-65327915(+)$1	311	79	108	10.9235
fccc[gggggggooooooggggggg22cc	chr1:143179049-143179335(+)$1	286	189	218	13.0252
[==========rrrrrrrrr=========	chr2:209622513-209622758(+)$1	245	65	94	13.6315
ddd!!gggggggooooooggggggg]ddd	chr1:6037170-6037458(-)$1	288	119	148	12.8122
$$$==========nnnnn==========6	chr4:80146066-80146321(+)$1	255	184	213	13.0435
:===========ppppppp==========	chr1:150592875-150593120(-)$1	245	69	98	11.2421

#otherMatches

#Seq PSSM
ucugccacuaucaccacagucaguuuuag	chr9:117128811-117129093(-)$1	282	245	274	10.9871
gaggucaggaguucaagaccagccuggcc	chr19:55557377-55557646(+)$1	269	22	51	10.6348
caaaagccauagucuacucuaugacuuug	chr15:41583458-41583744(+)$1	286	109	138	10.2294
auaaaaagaacaaaaucauguccuuugca	chr11:5478499-5478769(-)$1	270	215	244	11.8680
ggauuaugggaacuacaauucaagaugag	chr18:1307991-1308256(-)$1	265	50	79	12.1505
acaggugugagccacugcgcccggccUAA	chrX:70628278-70628528(+)$1	250	152	181	10.7739
cccugugcuuugagaagccaaggcaggaa	chr3:152095624-152095909(+)$1	285	248	277	13.6699
CCAugcgugugugcacauauguguguacg	chr16:29679142-29679391(+)$1	249	56	85	11.3163
auauUCUACUAUUAAUAUUUUUAUUUAGG	chr10:70194936-70195211(-)$1	275	6	35	11.3163
CGAGUCCCCGGGGAACAACGUGGUGGACA	chr19:8468334-8468593(+)$1	259	14	43	11.1695
cccaaagugcugagauuacagacuugagc	chr7:99952154-99952395(+)$1	241	107	136	11.0418
aggauucaccauguuguccaggugagucu	chr1:150593254-150593491(-)$1	237	105	134	9.5973
UUGGAGGGGCCGCCAUCUUGGUCCCAGCU	chr2:172016736-172017018(-)$1	282	107	136	13.2053
UCUGUAGAUCUGUUUCUUGGUUUUACAGG	chrX:109417584-109417834(+)$1	250	140	169	12.1569
GCGGGCUUCUUGGUUGCCAAGAGGCAGAC	chr2:132035528-132035796(+)$1	268	46	75	11.2936
GUGGGUGAGGUUGGUGACUGCUCCACCUG	chr1:143402205-143402458(-)$1	253	102	131	10.9226
GUUUGUGUGUACGGUGUGAAGGUAUAUAG	chr6:32132479-32132773(+)$1	294	158	187	10.8287
cacccuaugcaucuuuucauguauaucuu	chr15:40344193-40344472(+)$1	279	51	80	13.3438
UCCAGUUUUUUCCUUGCCAAGAAACUGGG	chr22:21936392-21936686(+)$1	294	193	222	11.6758
auugagucuugaaggaugaguaggauuua	chr12:56529959-56530291(+)$1	332	42	71	13.6315
CACUAGGUUAAUUUUACUGUUAACAAUAG	chr16:87430166-87430492(+)$1	326	217	246	10.8699
cugcagugagcuaugaugggccacugcac	chr15:40985734-40986025(-)$1	291	177	206	14.0594
uaaaaaacuuuauuuauuuauuuuuuuga	chr11:9319190-9319471(-)$1	281	207	236	12.8120
CAGCCUCAGGAGACACAACCCUAGGAAAA	chr17:75352853-75353135(+)$1	282	53	82	9.9646
agugguuguuuuggaaguaagaaugacug	chr15:88239056-88239329(-)$1	273	164	193	11.9654
GUGGAGCAGUUCAAUAUAGAGUCUUUUUU	chr16:29680374-29680584(+)$1	210	99	128	13.1795
CCGGUGCUCAAGUUCCAUCUUUGCAAUUC	chr19:10555918-10556180(+)$1	262	162	191	13.6831
gccuguaauccuaacacuuuggaggcagg	chr19:10846546-10846811(+)$1	265	137	166	10.8867
uauuuuguaugcuaaaaaucauacaggaa	chr15:88201378-88201673(-)$1	295	255	284	10.4041
UGUAAGUGGGGUAUUGGUGCCCCAUUUAA	chr19:10437631-10437885(-)$1	254	1	30	12.7960
GAAUGGUCAUACUAUUUUGUAUUGAUGAC	chr11:66417512-66417788(+)$1	276	103	132	12.0762
augaccuGGUAACUUUUGAAGGGACUGUU	chr7:150766412-150766706(+)$1	294	41	70	9.2996
GAUGGAGUCCCCAGUGAAGGGGGUUCCUA	chr20:402519-402820(+)$1	301	189	218	10.4738
agauugugcugcugcaccccagccugggc	chr2:198356766-198356983(-)$1	217	1	30	10.6199
aacagugccuucauguagugggugcugua	chr20:45853324-45853631(-)$1	307	13	42	12.8337
ugcccaggcuggucucaaacuccugggcu	chr19:19019095-19019346(-)$1	251	38	67	9.7371
GUGACCGUGGCCUUGUGUGGCGUCUUCAU	chr22:19486659-19486922(+)$1	263	197	226	10.4298
CCUGAGCCGAGGCCGCAUCCUCAGCUGCA	chr17:79807469-79807780(-)$1	311	178	207	10.2910
CAUUUAGAAGCAGCAUAACUGCUUCUAAU	chr5:32165698-32166009(-)$1	311	73	102	9.9824
gaucgcuugaacccaggaguuugaggcua	chr9:37206971-37207210(+)$1	239	62	91	10.5908
ccugcacggagaguuuuaucuccgggcug	chr19:47282182-47282462(-)$1	280	61	90	10.3253
uggcaccaccgcacuccagccuggugaca	chr7:102032121-102032372(+)$1	251	167	196	10.6558
cucagccucccgaguagcugggauuacag	chr17:80440761-80440995(+)$1	234	23	52	10.1440
accaaguagcugggaccacaggugcuugc	chr6:155174431-155174725(+)$1	294	176	205	11.9247
cuaauuuuuauauuuuuuguagagauagg	chr1:143451657-143451899(-)$1	242	189	218	11.8584
uGGACAAGUCACUUCUCUGUGCUCCGGUc	chr11:107727455-107727713(-)$1	258	134	163	10.0631
Ccuuuaguuuucucaccuguaaacugagg	chr5:34698194-34698494(+)$1	300	139	168	15.3525
gagcccggguuuugguguuaaaucugggu	chrX:53426954-53427219(-)$1	265	24	53	11.9654
GGUCUGUCGGUCAGCGUGGACUCAGGCAG	chr15:66878811-66879034(+)$1	223	158	187	12.8832
acuacaagugugagccaccaugccuggUC	chr3:171481026-171481325(-)$1	299	232	261	10.2745
AGAGGAAUAGGAuuuuugucuauuuuuua	chr5:65327604-65327915(+)$1	311	79	108	10.9235
aggucagcaucaagaagauggugcuuaac	chr1:143179049-143179335(+)$1	286	189	218	13.0252
AAAGAAGAGAAUCCUCCUGUUUCUUUUCU	chr2:209622513-209622758(+)$1	245	65	94	13.6315
CGGGUGGGGUUGGCAGGGUGGCCCCGUCG	chr1:6037170-6037458(-)$1	288	119	148	12.8122
uuuagcuaauauuauaucaauauuaguuu	chr4:80146066-80146321(+)$1	255	184	213	13.0435
gaagagcuugaguuaguaucuuaggcuuu	chr1:150592875-150593120(-)$1	245	69	98	11.2421

#DB
((((..(((..(......)..)))..)))	chr9:117128811-117129093(-)$1	1	245	274	10.9871
(.(((((((.(((...)))...)))))))	chr19:55557377-55557646(+)$1	1	22	51	10.6348
((((.(.(((((......))))).)))))	chr15:41583458-41583744(+)$1	1	109	138	10.2294
....((((.(((......))).))))...	chr11:5478499-5478769(-)$1	1	215	244	11.8680
(..((((..(((......)))...)))).	chr18:1307991-1308256(-)$1	1	50	79	12.1505
..((((..(.((......)))..))))..	chrX:70628278-70628528(+)$1	1	152	181	10.7739
(..(.(((((((......))))))).)..	chr3:152095624-152095909(+)$1	1	248	277	13.6699
.((((((((((((((((((((((((((((	chr16:29679142-29679391(+)$1	1	56	85	11.3163
.((((((((((((((((((((((((((((	chr10:70194936-70195211(-)$1	1	6	35	11.3163
.(((((((((.(......).))).)))).	chr19:8468334-8468593(+)$1	1	14	43	11.1695
(...((((.(((......)))))))))))	chr7:99952154-99952395(+)$1	1	107	136	11.0418
((.(((((((.((.....)))))))))))	chr1:150593254-150593491(-)$1	1	105	134	9.5973
(....(((((((......)))))))))))	chr2:172016736-172017018(-)$1	1	107	136	13.2053
((((((((.(((.....))).))))))))	chrX:109417584-109417834(+)$1	1	140	169	12.1569
(.(((((((((((...)))))))))...)	chr2:132035528-132035796(+)$1	1	46	75	11.2936
(((((((.(((.(....).))).))))))	chr1:143402205-143402458(-)$1	1	102	131	10.9226
((...(((((((.........))))))))	chr6:32132479-32132773(+)$1	1	158	187	10.8287
(((..(((((((......)))))))....	chr15:40344193-40344472(+)$1	1	51	80	13.3438
.((((((((((.......)))))))))))	chr22:21936392-21936686(+)$1	1	193	222	11.6758
.((((((((((.........)))))))))	chr12:56529959-56530291(+)$1	1	42	71	13.6315
(.(((.((((((......))))))..)))	chr16:87430166-87430492(+)$1	1	217	246	10.8699
.(((((((.(((......)))))))))))	chr15:40985734-40986025(-)$1	1	177	206	14.0594
(((((((...((......)).))))))).	chr11:9319190-9319471(-)$1	1	207	236	12.8120
(..(((.(((.(......)))))))....	chr17:75352853-75353135(+)$1	1	53	82	9.9646
((((((((((((.......))))))))))	chr15:88239056-88239329(-)$1	1	164	193	11.9654
(.(((....(((......)))))).))))	chr16:29680374-29680584(+)$1	1	99	128	13.1795
....(((..(((......))).)))....	chr19:10555918-10556180(+)$1	1	162	191	13.6831
((((((..(((.........))).)))))	chr19:10846546-10846811(+)$1	1	137	166	10.8867
..(((((((((........))))))))))	chr15:88201378-88201673(-)$1	1	255	284	10.4041
(.(((((((((((....))))))))))).	chr19:10437631-10437885(-)$1	1	1	30	12.7960
(..(.(((((((......))).)))).).	chr11:66417512-66417788(+)$1	1	103	132	12.0762
(((((..(((..(((...)))..))))))	chr7:150766412-150766706(+)$1	1	41	70	9.2996
...(((((((((......)))))))))..	chr20:402519-402820(+)$1	1	189	218	10.4738
.(((((((((((((((..((((((((((.	chr2:198356766-198356983(-)$1	1	1	30	10.6199
.(((((((((.(.....).))))))))).	chr20:45853324-45853631(-)$1	1	13	42	12.8337
.(((((((..(((.....)))))))))).	chr19:19019095-19019346(-)$1	1	38	67	9.7371
((((.....(((......)))....))))	chr22:19486659-19486922(+)$1	1	197	226	10.4298
(((((((.((((......)))).))).))	chr17:79807469-79807780(-)$1	1	178	207	10.2910
...((((((((((.....)))))))))).	chr5:32165698-32166009(-)$1	1	73	102	9.9824
((((((((((((......)))))))(((.	chr9:37206971-37207210(+)$1	1	62	91	10.5908
((....((((((......))))))))))(	chr19:47282182-47282462(-)$1	1	61	90	10.3253
((.(((((..((......)).))))).))	chr7:102032121-102032372(+)$1	1	167	196	10.6558
((((((((((.((((.((((((((((((.	chr17:80440761-80440995(+)$1	1	23	52	10.1440
..((((((.(((......))).)))))).	chr6:155174431-155174725(+)$1	1	176	205	11.9247
...(((((((((.....))))))))))))	chr1:143451657-143451899(-)$1	1	189	218	11.8584
((((...(.(((......)))))))))..	chr11:107727455-107727713(-)$1	1	134	163	10.0631
.(((((((((.(......).)))))))))	chr5:34698194-34698494(+)$1	1	139	168	15.3525
((((((((((((.......))))))))))	chrX:53426954-53427219(-)$1	1	24	53	11.9654
((((((((((((......))))..)))))	chr15:66878811-66879034(+)$1	1	158	187	12.8832
((((...(((((......))))).)))))	chr3:171481026-171481325(-)$1	1	232	261	10.2745
.((((((((((.......))))))))))(	chr5:65327604-65327915(+)$1	1	79	108	10.9235
((((.(((((((......)))))))..))	chr1:143179049-143179335(+)$1	1	189	218	13.0252
.((((((((((.........)))))))))	chr2:209622513-209622758(+)$1	1	65	94	13.6315
(((..(((((((......))))))).)))	chr1:6037170-6037458(-)$1	1	119	148	12.8122
...((((((((((.....)))))))))).	chr4:80146066-80146321(+)$1	1	184	213	13.0435
.(((((((((((.......))))))))))	chr1:150592875-150593120(-)$1	1	69	98	11.2421

#PSSM
: : 0.14	f : 0.12	d : 0.10	[ : 0.08	! : 0.07	g : 0.07	= : 0.07	b : 0.05	$ : 0.05	i : 0.03	c : 0.03	a : 0.03	e : 0.03	h : 0.01	" : 0.01	# : 0.01	G : 0.01	
= : 0.21	! : 0.10	f : 0.08	[ : 0.08	d : 0.08	g : 0.08	i : 0.07	$ : 0.05	" : 0.03	# : 0.03	: : 0.03	c : 0.03	b : 0.01	G : 0.01	e : 0.01	
= : 0.23	g : 0.10	f : 0.08	i : 0.08	! : 0.07	d : 0.07	$ : 0.05	# : 0.05	c : 0.05	b : 0.03	" : 0.03	[ : 0.03	: : 0.03	G : 0.01	e : 0.01	
= : 0.26	g : 0.12	i : 0.12	f : 0.08	d : 0.07	c : 0.07	# : 0.05	a : 0.03	" : 0.03	! : 0.03	e : 0.03	$ : 0.01	b : 0.01	G : 0.01	
= : 0.26	i : 0.14	g : 0.12	d : 0.08	c : 0.08	[ : 0.07	! : 0.05	" : 0.05	# : 0.03	$ : 0.01	G : 0.01	e : 0.01	f : 0.01	
= : 0.26	g : 0.23	i : 0.14	d : 0.10	c : 0.05	! : 0.03	# : 0.03	" : 0.03	a : 0.01	[ : 0.01	$ : 0.01	e : 0.01	f : 0.01	
= : 0.26	g : 0.21	i : 0.14	d : 0.08	c : 0.05	! : 0.05	f : 0.05	[ : 0.03	" : 0.03	# : 0.01	$ : 0.01	e : 0.01	
= : 0.26	g : 0.19	i : 0.12	c : 0.07	! : 0.07	e : 0.05	d : 0.05	f : 0.05	[ : 0.03	" : 0.01	# : 0.01	$ : 0.01	a : 0.01	
= : 0.24	g : 0.16	c : 0.10	[ : 0.10	i : 0.10	! : 0.07	d : 0.05	e : 0.03	f : 0.03	a : 0.01	" : 0.01	# : 0.01	$ : 0.01	
c : 0.28	= : 0.24	g : 0.14	i : 0.10	! : 0.05	[ : 0.03	e : 0.03	f : 0.03	d : 0.03	" : 0.01	
c : 0.26	= : 0.23	g : 0.12	[ : 0.10	i : 0.07	b : 0.05	! : 0.03	e : 0.03	f : 0.03	d : 0.03	
c : 0.23	= : 0.16	g : 0.12	a : 0.08	b : 0.07	i : 0.05	r : 0.05	d : 0.05	e : 0.03	p : 0.03	f : 0.03	[ : 0.01	q : 0.01	! : 0.01	
o : 0.53	= : 0.10	p : 0.08	r : 0.07	c : 0.05	n : 0.05	b : 0.01	i : 0.01	a : 0.01	q : 0.01	d : 0.01	
o : 0.53	n : 0.12	p : 0.08	r : 0.07	= : 0.05	l : 0.03	m : 0.03	q : 0.01	c : 0.01	d : 0.01	
o : 0.53	n : 0.12	p : 0.08	r : 0.07	= : 0.05	l : 0.03	m : 0.03	q : 0.01	c : 0.01	d : 0.01	
o : 0.53	n : 0.12	p : 0.08	r : 0.07	l : 0.05	= : 0.05	m : 0.03	q : 0.01	[ : 0.01	
o : 0.53	n : 0.12	p : 0.08	r : 0.07	= : 0.05	m : 0.03	c : 0.01	i : 0.01	q : 0.01	l : 0.01	! : 0.01	
o : 0.53	p : 0.08	= : 0.07	n : 0.07	r : 0.07	c : 0.03	i : 0.03	a : 0.03	q : 0.01	l : 0.01	! : 0.01	
c : 0.24	= : 0.16	g : 0.10	a : 0.07	b : 0.07	r : 0.07	i : 0.05	p : 0.05	e : 0.03	] : 0.03	f : 0.03	d : 0.03	q : 0.01	
c : 0.26	= : 0.21	g : 0.10	i : 0.08	b : 0.07	r : 0.07	e : 0.03	] : 0.03	f : 0.03	d : 0.03	2 : 0.01	3 : 0.01	
c : 0.28	= : 0.24	g : 0.12	i : 0.10	] : 0.05	e : 0.03	f : 0.03	d : 0.03	2 : 0.01	3 : 0.01	a : 0.01	r : 0.01	
= : 0.24	g : 0.19	i : 0.12	c : 0.10	] : 0.07	e : 0.05	d : 0.05	3 : 0.03	2 : 0.03	f : 0.03	4 : 0.01	a : 0.01	
= : 0.24	g : 0.21	i : 0.12	c : 0.10	e : 0.07	d : 0.05	2 : 0.05	f : 0.05	] : 0.03	3 : 0.01	4 : 0.01	
= : 0.24	g : 0.21	i : 0.14	c : 0.10	] : 0.07	d : 0.07	f : 0.05	e : 0.03	3 : 0.01	4 : 0.01	2 : 0.01	
= : 0.26	g : 0.23	i : 0.14	d : 0.12	c : 0.07	2 : 0.03	e : 0.03	f : 0.03	a : 0.01	] : 0.01	4 : 0.01	
= : 0.26	g : 0.14	d : 0.14	i : 0.12	2 : 0.05	f : 0.05	c : 0.05	] : 0.03	4 : 0.03	e : 0.03	b : 0.01	3 : 0.01	5 : 0.01	
= : 0.26	g : 0.16	d : 0.12	i : 0.10	f : 0.07	c : 0.05	] : 0.05	3 : 0.03	4 : 0.03	a : 0.01	b : 0.01	5 : 0.01	e : 0.01	2 : 0.01	
= : 0.26	g : 0.14	d : 0.14	f : 0.08	i : 0.08	c : 0.08	3 : 0.05	4 : 0.03	: : 0.03	2 : 0.01	5 : 0.01	a : 0.01	
= : 0.14	f : 0.08	2 : 0.08	d : 0.08	g : 0.07	c : 0.07	: : 0.07	] : 0.05	i : 0.05	b : 0.05	e : 0.05	3 : 0.03	4 : 0.03	5 : 0.01	! : 0.01	o : 0.01	[ : 0.01	6 : 0.01	

#score	648.8953010667175
#seq	56
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_UTR_m1_run2.txt

#BEAR
"""cccyyyyyyyyyyyyyyyyccc	chr14:73569965-73570202(+)$1	237	41	66	24.0218
:ccc^^^^^^^^^^^^^^^^^^^cc	chr9:97845826-97846113(+)$1	287	0	25	22.7860
:cccbb[awwwwwwwwwwwwwwa]b	chr9:97845609-97845852(+)$1	243	48	73	18.9767
f"""cccvvvvvvvvvvvvvccc33	chr5:139494648-139494873(+)$1	225	191	216	18.7918
!!ddddwwwwwwwwwwwwwwdddd2	chr21:46915824-46916098(+)$1	274	194	219	20.3788
=[a[bb^^^^^^^^^^^^^^^^^^^	chr12:76449751-76449978(-)$1	227	63	88	24.5740
f[ddddyyyyyyyyyyyyyyyyddd	chr12:113826847-113827091(+)$1	244	89	114	23.6655
:ffffffwwwwwwwwwwwwwwffff	chr17:38247606-38247829(+)$1	223	149	174	18.2910
"""cccxxxxxxxxxxxxxxxccc]	chr19:41083783-41084145(+)$1	362	171	196	21.6085
gggggg^^^^^^^^^^^^^^^^^^^	chr3:128532501-128532739(+)$1	238	185	210	24.9698
ffffff^^^^^^^^^^^^^^^^^^^	chr1:90492974-90493279(+)$1	305	22	47	24.5005
ffffffyyyyyyyyyyyyyyyyfff	chr6:42627236-42627535(+)$1	299	62	87	22.7830
ffffff^^^^^^^^^^^^^^^^^^^	chr1:90493079-90493349(+)$1	270	60	85	24.5005
eeddddaxxxxxxxxxxxxxxxa]d	chr4:1019740-1019985(+)$1	245	163	188	21.4675
d[bb^^^^^^^^^^^^^^^^^^^^^	chr3:9860734-9860977(+)$1	243	84	109	23.8618
:eeeeevvvvvvvvvvvvveeeee:	chr7:128498540-128498805(+)$1	265	114	139	16.6388
!!eeeeevvvvvvvvvvvvveeeee	chr7:106840502-106840758(+)$1	256	216	241	18.6476
f[dddd^^^^^^^^^^^^^^^^^^^	chr5:122165409-122165705(+)$1	296	120	145	25.1619
hhhhhh^^^^^^^^^^^^^^^^^^^	chr20:37547499-37547810(+)$1	311	147	172	23.6089
:eeeeeyyyyyyyyyyyyyyyyeee	chr21:46915754-46915969(+)$1	215	108	133	22.9220
::ddddyyyyyyyyyyyyyyyyddd	chr14:65232989-65233256(-)$1	267	216	241	22.0156
cc!!bbyyyyyyyyyyyyyyyybb2	chr19:41938663-41938958(-)$1	295	162	187	22.8030
F:dddd^^^^^^^^^^^^^^^^^^^	chr17:56405456-56405775(-)$1	319	269	294	23.9117
f[ddddyyyyyyyyyyyyyyyyddd	chr12:113826778-113827034(+)$1	256	158	183	23.6655
ffffff^^^^^^^^^^^^^^^^^^^	chr12:48438586-48438840(-)$1	254	175	200	24.5005
d!!cccyyyyyyyyyyyyyyyyccc	chr3:148890046-148890304(+)$1	258	163	188	23.8637
c!!ccc^^^^^^^^^^^^^^^^^^^	chr14:102965127-102965445(+)$1	318	60	85	25.2554
gggggg^^^^^^^^^^^^^^^^^^^	chr22:38170049-38170311(+)$1	262	56	81	24.9698
::ddddwwwwwwwwwwwwwwdddd:	chr21:46915486-46915692(+)$1	206	145	170	17.7307
""eeeeexxxxxxxxxxxxxxxeee	chr9:97845735-97846026(+)$1	291	215	240	21.3648
======zzzzzzzzzzzzzzzzz==	chr13:113539357-113539608(+)$1	251	95	120	20.1353
!!dddd^^^^^^^^^^^^^^^^^^^	chr14:102551017-102551221(-)$1	204	31	56	25.4694
[eeeee^^^^^^^^^^^^^^^^^^^	chr17:38246781-38247076(+)$1	295	145	170	25.0958
:eeeeewwwwwwwwwwwwwweeeee	chr7:148514800-148515060(-)$1	260	184	209	19.2976
$$dddd^^^^^^^^^^^^^^^^^^^	chr19:4037888-4038135(+)$1	247	174	199	24.9445
gggggg^^^^^^^^^^^^^^^^^^^	chr9:134353799-134354063(+)$1	264	164	189	24.9698
::ddddwwwwwwwwwwwwwwdddd:	chr21:46915453-46915686(+)$1	233	178	203	17.7307
ffffff^^^^^^^^^^^^^^^^^^^	chr3:9860905-9861165(+)$1	260	45	70	24.5005
DD:cccyyyyyyyyyyyyyyyyccc	chr9:97845457-97845713(+)$1	256	179	204	20.7128
caeeeeeuuuuuuuuuuuueeeee3	chr1:36031980-36032258(+)$1	278	8	33	18.5367
""ddddwwwwwwwwwwwwwwdddd2	chr3:9860578-9860831(+)$1	253	33	58	20.2688
!eeeee^^^^^^^^^^^^^^^^^^^	chr7:100075801-100076077(-)$1	276	44	69	25.1506
f[ddddyyyyyyyyyyyyyyyyddd	chr12:113826725-113826978(+)$1	253	211	236	23.6655
fff!!bbxxxxxxxxxxxxxxxbb2	chr22:38169768-38170046(+)$1	278	222	247	20.1531
!!eeeeeuuuuuuuuuuuueeeee2	chr14:100840132-100840417(-)$1	285	248	273	18.7498
!!dddd^^^^^^^^^^^^^^^^^^^	chr14:102551021-102551256(-)$1	235	66	91	25.4694
ffffff^^^^^^^^^^^^^^^^^^^	chr12:48438522-48438786(-)$1	264	121	146	24.5005
##dddd^^^^^^^^^^^^^^^^^^^	chr13:30779640-30779924(-)$1	284	102	127	25.2816
gggggg^^^^^^^^^^^^^^^^^^^	chr9:34635426-34635653(-)$1	227	111	136	24.9698
!!ddddyyyyyyyyyyyyyyyyddd	chr16:67209829-67210085(-)$1	256	203	228	23.9731
dddccczzzzzzzzzzzzzzzzzcc	chr10:50534848-50535124(+)$1	276	209	234	19.9030
:eeeee^^^^^^^^^^^^^^^^^^^	chr14:35522513-35522766(+)$1	253	3	28	24.3274
!!a[cccwwwwwwwwwwwwwwccc2	chr1:31345060-31345311(-)$1	251	115	140	20.6704
ffffff^^^^^^^^^^^^^^^^^^^	chr11:72432988-72433203(-)$1	215	70	95	24.5005
gggggg^^^^^^^^^^^^^^^^^^g	chr12:49976589-49976836(+)$1	247	64	89	24.4168
:eeeeexxxxxxxxxxxxxxxeeee	chr11:2152660-2152912(-)$1	252	59	84	20.4368
gggggg^^^^^^^^^^^^^^^^^^^	chr19:49685693-49685948(+)$1	255	101	126	24.9698
dd[ccc^^^^^^^^^^^^^^^^^^c	chr10:50534924-50535238(+)$1	314	138	163	24.1484
gggggggxxxxxxxxxxxxxxxggg	chr9:34635240-34635516(-)$1	276	159	184	20.7149
gggggg^^^^^^^^^^^^^^^^^^g	chr12:49976648-49976871(+)$1	223	5	30	24.4168
[eeeee^^^^^^^^^^^^^^^^^^e	chr1:154148611-154148821(-)$1	210	69	94	24.5472
::ddddwwwwwwwwwwwwwwddddJ	chr21:46915604-46915808(+)$1	204	27	52	17.0846
:cccbb^^^^^^^^^^^^^^^^^^b	chr3:128532365-128532649(+)$1	284	77	102	23.0851
[ffffffxxxxxxxxxxxxxxxfff	chr22:24313477-24313756(-)$1	279	152	177	20.3110
c[eeeeevvvvvvvvvvvvveeeee	chr13:113539812-113540095(+)$1	283	116	141	18.4314
===!!cccvvvvvvvvvvvvvccc2	chr21:46915546-46915797(+)$1	251	118	143	18.2186

#otherMatches

#Seq PSSM
ggaacgagaaagggaaagagaacgu	chr14:73569965-73570202(+)$1	237	41	66	24.0218
cgcggcacacacaccacacacagcg	chr9:97845826-97846113(+)$1	287	0	25	22.7860
cgcggcacacacagcacacacagcg	chr9:97845609-97845852(+)$1	243	48	73	18.9767
aaaaguuaaaaaaaaaaaaaaaCCU	chr5:139494648-139494873(+)$1	225	191	216	18.7918
uccaugcccuccaagcccuccaugc	chr21:46915824-46916098(+)$1	274	194	219	20.3788
UGAAGAUGAGAAAAAAGAUGAAGAA	chr12:76449751-76449978(-)$1	227	63	88	24.5740
CAGUCCCCUCGUCUCCCUUUCUGGG	chr12:113826847-113827091(+)$1	244	89	114	23.6655
GGGUAGGCCCUCUUGUACCUUCCUA	chr17:38247606-38247829(+)$1	223	149	174	18.2910
UUCUACCCCUUGACAUUCUCUGUGC	chr19:41083783-41084145(+)$1	362	171	196	21.6085
GUCUUUUUACCCCCCCUUUCCCCUC	chr3:128532501-128532739(+)$1	238	185	210	24.9698
CCUAUUgaagaagaggaggaugaag	chr1:90492974-90493279(+)$1	305	22	47	24.5005
acuacacacacacacacauacCUGU	chr6:42627236-42627535(+)$1	299	62	87	22.7830
aguagggguagugggagaaguagag	chr1:90493079-90493349(+)$1	270	60	85	24.5005
UGCUGCCUCAACACUCACACACGUG	chr4:1019740-1019985(+)$1	245	163	188	21.4675
ucacccacccacccuuccacucauc	chr3:9860734-9860977(+)$1	243	84	109	23.8618
AUGUGCCACACCCAGACACGCACAG	chr7:128498540-128498805(+)$1	265	114	139	16.6388
CUGUUGGAAGAGGAAAAGAACCAAU	chr7:106840502-106840758(+)$1	256	216	241	18.6476
AUGUCCUGACCCUCUUUGAAUUAAG	chr5:122165409-122165705(+)$1	296	120	145	25.1619
acacacacacacacacauauacaca	chr20:37547499-37547810(+)$1	311	147	172	23.6089
caugcacacauacauauacacaugc	chr21:46915754-46915969(+)$1	215	108	133	22.9220
CCCCUGCACCcacaccuacacacag	chr14:65232989-65233256(-)$1	267	216	241	22.0156
gcacgcacgcacacacacacacgca	chr19:41938663-41938958(-)$1	295	162	187	22.8030
UACCAGCAAACAUAGCUCACAUACC	chr17:56405456-56405775(-)$1	319	269	294	23.9117
CAGUCCCCUCGUCUCCCUUUCUGGG	chr12:113826778-113827034(+)$1	256	158	183	23.6655
cauacacacacacccacacacacaa	chr12:48438586-48438840(-)$1	254	175	200	24.5005
UAUGACCUCAAUCAAUUUAAUUGUC	chr3:148890046-148890304(+)$1	258	163	188	23.8637
ACAUGcacaccacaacacacaacac	chr14:102965127-102965445(+)$1	318	60	85	25.2554
UUUUUUCCAAAACACUUUAUACUUU	chr22:38170049-38170311(+)$1	262	56	81	24.9698
acgcacacacacauccacacGUGCU	chr21:46915486-46915692(+)$1	206	145	170	17.7307
ccugcggcacacacagcacaCACCG	chr9:97845735-97846026(+)$1	291	215	240	21.3648
acguguacacauaccacagacacgc	chr13:113539357-113539608(+)$1	251	95	120	20.1353
aggauggugacaagaagaagaagaa	chr14:102551017-102551221(-)$1	204	31	56	25.4694
CCCCAGCUCCUACUCACUGCACUAA	chr17:38246781-38247076(+)$1	295	145	170	25.0958
UUGGUUAGUUUCAGUAUAAAGACCA	chr7:148514800-148515060(-)$1	260	184	209	19.2976
aaugacaaaaaaagauacaaaaaag	chr19:4037888-4038135(+)$1	247	174	199	24.9445
CCUGCUGGAGGAAGAGAGAAGAAAG	chr9:134353799-134354063(+)$1	264	164	189	24.9698
acgcacacacacauccacacGUGCU	chr21:46915453-46915686(+)$1	233	178	203	17.7307
acagauccaccuacccaucuaucua	chr3:9860905-9861165(+)$1	260	45	70	24.5005
gcacgcaccacacagagcacacgcg	chr9:97845457-97845713(+)$1	256	179	204	20.7128
CCUGUCCUUAUCCCUGCUUGGACAC	chr1:36031980-36032258(+)$1	278	8	33	18.5367
CUGUGGUUACCUccacucucccacc	chr3:9860578-9860831(+)$1	253	33	58	20.2688
CACUGGUUUcacacacacacacaca	chr7:100075801-100076077(-)$1	276	44	69	25.1506
CAGUCCCCUCGUCUCCCUUUCUGGG	chr12:113826725-113826978(+)$1	253	211	236	23.6655
auacacacacacacacacacacUGC	chr22:38169768-38170046(+)$1	278	222	247	20.1531
cacacacaAGauuucaauagugugg	chr14:100840132-100840417(-)$1	285	248	273	18.7498
aggauggugacaagaagaagaagaa	chr14:102551021-102551256(-)$1	235	66	91	25.4694
cauacacacacacccacacacacaa	chr12:48438522-48438786(-)$1	264	121	146	24.5005
acugugcccagccCUAACUUUUAAU	chr13:30779640-30779924(-)$1	284	102	127	25.2816
AGGGACAUACACCAUGCAGAUCCUG	chr9:34635426-34635653(-)$1	227	111	136	24.9698
UCCUGUCUUUGCUCACACCCUCACA	chr16:67209829-67210085(-)$1	256	203	228	23.9731
GUAGGGAUCCCAAGACGACCUCACC	chr10:50534848-50535124(+)$1	276	209	234	19.9030
CUGGGAGUCAUAGGAAAAAAGAAGA	chr14:35522513-35522766(+)$1	253	3	28	24.3274
CACUUACACACCCCCAGACACGUAC	chr1:31345060-31345311(-)$1	251	115	140	20.6704
GUGAUUCACAAACACUUAAAGACAU	chr11:72432988-72433203(-)$1	215	70	95	24.5005
uauauacacaaagauacacacacau	chr12:49976589-49976836(+)$1	247	64	89	24.4168
acaugcacacacagcacacacgcau	chr11:2152660-2152912(-)$1	252	59	84	20.4368
UUUGAGCUAAUCUCUUCCCCUAUUC	chr19:49685693-49685948(+)$1	255	101	126	24.9698
GAUCCCAAGACGACCUCACCCAAAG	chr10:50534924-50535238(+)$1	314	138	163	24.1484
AGUUGUGUUCAGACACACACAUCAC	chr9:34635240-34635516(-)$1	276	159	184	20.7149
uauauacacaaagauacacacacau	chr12:49976648-49976871(+)$1	223	5	30	24.4168
CCUUGUCCAUUCUUUCCUUCAAAUG	chr1:154148611-154148821(-)$1	210	69	94	24.5472
acgcacacacacauccacacGUGCU	chr21:46915604-46915808(+)$1	204	27	52	17.0846
cacgcacacacacacacacaGAUCU	chr3:128532365-128532649(+)$1	284	77	102	23.0851
UCUUCAUCCUCAUAUGAAAUAAAUG	chr22:24313477-24313756(-)$1	279	152	177	20.3110
cacauguacgcaccacaaacacaug	chr13:113539812-113540095(+)$1	283	116	141	18.4314
uacacaugcccauacacuccacaua	chr21:46915546-46915797(+)$1	251	118	143	18.2186

#DB
...(((................)))	chr14:73569965-73570202(+)$1	1	41	66	24.0218
.(((...................))	chr9:97845826-97846113(+)$1	1	0	25	22.7860
.(((((.(..............).)	chr9:97845609-97845852(+)$1	1	48	73	18.9767
(...(((.............)))..	chr5:139494648-139494873(+)$1	1	191	216	18.7918
..((((..............)))).	chr21:46915824-46916098(+)$1	1	194	219	20.3788
(.(.((...................	chr12:76449751-76449978(-)$1	1	63	88	24.5740
(.((((................)))	chr12:113826847-113827091(+)$1	1	89	114	23.6655
.((((((..............))))	chr17:38247606-38247829(+)$1	1	149	174	18.2910
...(((...............))).	chr19:41083783-41084145(+)$1	1	171	196	21.6085
((((((...................	chr3:128532501-128532739(+)$1	1	185	210	24.9698
((((((...................	chr1:90492974-90493279(+)$1	1	22	47	24.5005
((((((................)))	chr6:42627236-42627535(+)$1	1	62	87	22.7830
((((((...................	chr1:90493079-90493349(+)$1	1	60	85	24.5005
(((((((...............).)	chr4:1019740-1019985(+)$1	1	163	188	21.4675
(.((.....................	chr3:9860734-9860977(+)$1	1	84	109	23.8618
.(((((.............))))).	chr7:128498540-128498805(+)$1	1	114	139	16.6388
..(((((.............)))))	chr7:106840502-106840758(+)$1	1	216	241	18.6476
(.((((...................	chr5:122165409-122165705(+)$1	1	120	145	25.1619
((((((...................	chr20:37547499-37547810(+)$1	1	147	172	23.6089
.(((((................)))	chr21:46915754-46915969(+)$1	1	108	133	22.9220
..((((................)))	chr14:65232989-65233256(-)$1	1	216	241	22.0156
((..((................)).	chr19:41938663-41938958(-)$1	1	162	187	22.8030
).((((...................	chr17:56405456-56405775(-)$1	1	269	294	23.9117
(.((((................)))	chr12:113826778-113827034(+)$1	1	158	183	23.6655
((((((...................	chr12:48438586-48438840(-)$1	1	175	200	24.5005
(..(((................)))	chr3:148890046-148890304(+)$1	1	163	188	23.8637
(..(((...................	chr14:102965127-102965445(+)$1	1	60	85	25.2554
((((((...................	chr22:38170049-38170311(+)$1	1	56	81	24.9698
..((((..............)))).	chr21:46915486-46915692(+)$1	1	145	170	17.7307
..(((((...............)))	chr9:97845735-97846026(+)$1	1	215	240	21.3648
((((((.................))	chr13:113539357-113539608(+)$1	1	95	120	20.1353
..((((...................	chr14:102551017-102551221(-)$1	1	31	56	25.4694
.(((((...................	chr17:38246781-38247076(+)$1	1	145	170	25.0958
.(((((..............)))))	chr7:148514800-148515060(-)$1	1	184	209	19.2976
..((((...................	chr19:4037888-4038135(+)$1	1	174	199	24.9445
((((((...................	chr9:134353799-134354063(+)$1	1	164	189	24.9698
..((((..............)))).	chr21:46915453-46915686(+)$1	1	178	203	17.7307
((((((...................	chr3:9860905-9861165(+)$1	1	45	70	24.5005
((.(((................)))	chr9:97845457-97845713(+)$1	1	179	204	20.7128
(((((((............))))).	chr1:36031980-36032258(+)$1	1	8	33	18.5367
..((((..............)))).	chr3:9860578-9860831(+)$1	1	33	58	20.2688
.(((((...................	chr7:100075801-100076077(-)$1	1	44	69	25.1506
(.((((................)))	chr12:113826725-113826978(+)$1	1	211	236	23.6655
(((..((...............)).	chr22:38169768-38170046(+)$1	1	222	247	20.1531
..(((((............))))).	chr14:100840132-100840417(-)$1	1	248	273	18.7498
..((((...................	chr14:102551021-102551256(-)$1	1	66	91	25.4694
((((((...................	chr12:48438522-48438786(-)$1	1	121	146	24.5005
..((((...................	chr13:30779640-30779924(-)$1	1	102	127	25.2816
((((((...................	chr9:34635426-34635653(-)$1	1	111	136	24.9698
..((((................)))	chr16:67209829-67210085(-)$1	1	203	228	23.9731
)))(((.................))	chr10:50534848-50535124(+)$1	1	209	234	19.9030
.(((((...................	chr14:35522513-35522766(+)$1	1	3	28	24.3274
..(.(((..............))).	chr1:31345060-31345311(-)$1	1	115	140	20.6704
((((((...................	chr11:72432988-72433203(-)$1	1	70	95	24.5005
((((((..................)	chr12:49976589-49976836(+)$1	1	64	89	24.4168
.(((((...............))))	chr11:2152660-2152912(-)$1	1	59	84	20.4368
((((((...................	chr19:49685693-49685948(+)$1	1	101	126	24.9698
((.(((..................)	chr10:50534924-50535238(+)$1	1	138	163	24.1484
(((((((...............)))	chr9:34635240-34635516(-)$1	1	159	184	20.7149
((((((..................)	chr12:49976648-49976871(+)$1	1	5	30	24.4168
.(((((..................)	chr1:154148611-154148821(-)$1	1	69	94	24.5472
..((((..............))))(	chr21:46915604-46915808(+)$1	1	27	52	17.0846
.(((((..................)	chr3:128532365-128532649(+)$1	1	77	102	23.0851
.((((((...............)))	chr22:24313477-24313756(-)$1	1	152	177	20.3110
(.(((((.............)))))	chr13:113539812-113540095(+)$1	1	116	141	18.4314
(((..(((.............))).	chr21:46915546-46915797(+)$1	1	118	143	18.2186

#PSSM
: : 0.19	f : 0.19	! : 0.12	g : 0.12	" : 0.06	d : 0.06	c : 0.06	= : 0.04	[ : 0.04	e : 0.01	h : 0.01	F : 0.01	$ : 0.01	D : 0.01	# : 0.01	
f : 0.15	! : 0.13	e : 0.13	g : 0.12	[ : 0.10	" : 0.07	: : 0.07	c : 0.06	= : 0.03	d : 0.03	h : 0.01	$ : 0.01	D : 0.01	a : 0.01	# : 0.01	
d : 0.27	e : 0.19	f : 0.15	g : 0.12	" : 0.04	c : 0.04	! : 0.04	a : 0.03	= : 0.03	b : 0.01	h : 0.01	: : 0.01	[ : 0.01	
d : 0.25	e : 0.19	c : 0.15	f : 0.13	g : 0.12	! : 0.04	[ : 0.03	" : 0.01	b : 0.01	h : 0.01	= : 0.01	
d : 0.25	e : 0.19	c : 0.13	f : 0.13	g : 0.12	b : 0.06	^ : 0.03	! : 0.03	h : 0.01	= : 0.01	
d : 0.25	e : 0.19	c : 0.15	f : 0.13	g : 0.12	b : 0.07	^ : 0.03	h : 0.01	= : 0.01	
^ : 0.45	y : 0.16	w : 0.09	e : 0.07	c : 0.04	f : 0.03	x : 0.03	z : 0.03	[ : 0.01	a : 0.01	v : 0.01	b : 0.01	g : 0.01	
^ : 0.45	y : 0.16	w : 0.12	x : 0.10	v : 0.06	z : 0.03	u : 0.03	a : 0.01	c : 0.01	
^ : 0.45	y : 0.16	w : 0.13	x : 0.10	v : 0.07	z : 0.03	u : 0.03	
^ : 0.45	y : 0.16	w : 0.13	x : 0.10	v : 0.07	z : 0.03	u : 0.03	
^ : 0.45	y : 0.16	w : 0.13	x : 0.10	v : 0.07	z : 0.03	u : 0.03	
^ : 0.45	y : 0.16	w : 0.13	x : 0.10	v : 0.07	z : 0.03	u : 0.03	
^ : 0.45	y : 0.16	w : 0.13	x : 0.10	v : 0.07	z : 0.03	u : 0.03	
^ : 0.45	y : 0.16	w : 0.13	x : 0.10	v : 0.07	z : 0.03	u : 0.03	
^ : 0.45	y : 0.16	w : 0.13	x : 0.10	v : 0.07	z : 0.03	u : 0.03	
^ : 0.45	y : 0.16	w : 0.13	x : 0.10	v : 0.07	z : 0.03	u : 0.03	
^ : 0.45	y : 0.16	w : 0.13	x : 0.10	v : 0.07	z : 0.03	u : 0.03	
^ : 0.45	y : 0.16	w : 0.13	x : 0.10	v : 0.07	z : 0.03	u : 0.03	
^ : 0.45	y : 0.16	w : 0.13	x : 0.10	v : 0.07	z : 0.03	u : 0.03	
^ : 0.45	y : 0.16	w : 0.13	x : 0.10	v : 0.06	e : 0.04	z : 0.03	
^ : 0.45	y : 0.16	x : 0.10	e : 0.09	d : 0.07	w : 0.04	z : 0.03	c : 0.01	v : 0.01	
^ : 0.45	y : 0.16	e : 0.10	d : 0.07	x : 0.07	c : 0.06	z : 0.03	w : 0.01	f : 0.01	
^ : 0.45	d : 0.15	e : 0.13	c : 0.10	f : 0.04	a : 0.03	b : 0.03	z : 0.03	g : 0.01	
^ : 0.43	d : 0.15	e : 0.13	c : 0.12	f : 0.04	] : 0.03	b : 0.03	3 : 0.01	= : 0.01	g : 0.01	
^ : 0.36	2 : 0.10	e : 0.10	c : 0.09	d : 0.09	f : 0.04	: : 0.04	g : 0.04	b : 0.03	3 : 0.03	] : 0.01	= : 0.01	J : 0.01	

#score	1475.9987766958293
#seq	66
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_transcript_m2_run2.txt

#BEAR
hhhhh[bbnnnnnbb]hhhhhhhh	chr13:113863808-113864055(+)$1	247	221	245	10.9908
gggggggooooooggggggg]eee	chr19:46523703-46523957(+)$1	254	93	117	9.3704
gggbb[bbnnnnnbb]bb]ggggg	chr6:32938460-32938754(+)$1	294	45	69	11.7230
hhh[a[bbnnnnnbb]a]hhhhhh	chr18:12012992-12013259(+)$1	267	208	232	11.5298
e[ccc!!aooooooa22ccc]eee	chr11:57408161-57408416(+)$1	255	66	90	9.1461
[bb"""bbnnnnnbb22bb]ffff	chr19:46142219-46142514(-)$1	295	37	61	11.1696
gggggggooooooggggggg]bb]	chr2:231902493-231902754(+)$1	261	158	182	9.0601
[ddddcccnnnnnccc4444dddd	chr2:27435069-27435327(+)$1	258	47	71	10.8470
ggggg[bbnnnnnbb]ggggggg2	chr1:205417041-205417265(-)$1	224	75	99	12.9510
[ccc[cccnnnnncccccc]ccc:	chr11:64658740-64658951(-)$1	211	146	170	11.5502
cc[ccc[bbnnnnnbb]ccc]ccc	chr2:97532853-97533107(-)$1	254	135	159	9.9374
dccc[cccnnnnnccc]cccffff	chr14:105934603-105934846(+)$1	243	53	77	12.1138
:gggggggnnnnnggggggg:ccc	chr9:97846549-97846768(+)$1	219	121	145	10.7036
ccc!!cccnnnnnccc22ccc:::	chr17:7476820-7477096(+)$1	276	207	231	9.5225
eeee[cccnnnnnccc]eeeeeff	chr13:92003760-92004006(+)$1	246	74	98	11.2720
gggggg[annnnna]gggggggee	chr11:57408472-57408777(+)$1	305	177	201	12.6115
"bb[a[bbnnnnnbb]a]bbccc]	chr3:38010696-38011007(+)$1	311	36	60	11.6667
ggg!!bboooooobb22ggggggg	chr7:1062525-1062749(-)$1	224	160	184	9.4160
ccc[ddddnnnnnddddccc4444	chr22:42297234-42297453(+)$1	219	154	178	10.8068
agggggggnnnnnggggggg]a22	chr3:184080669-184080945(+)$1	276	146	170	12.1403
gggggg[annnnna]ggggggg]g	chr17:19247344-19247614(-)$1	270	99	123	12.7241
ee[eeeeennnnneeeee]eeeee	chr11:64655562-64655835(-)$1	273	249	273	9.8423
hhhh!!bbnnnnnbb22hhhhhhh	chr1:41222750-41222961(+)$1	211	40	64	11.2808
c!!eeeeennnnneeeee22ccc]	chr6:32937880-32938116(+)$1	236	202	226	10.2576
ffffffbbnnnnnbb]ffffff]a	chr4:38869757-38870027(+)$1	270	31	55	11.1663
ccc[cccooooooccc]ccceeee	chr9:97847407-97847623(+)$1	216	29	53	9.3637
eeeee[bbnnnnnbbeeeee]fff	chr12:62996652-62996877(+)$1	225	92	116	11.1810
[ccccccooooooccc]cccdddd	chr3:52302193-52302412(-)$1	219	154	178	8.9957
========nnnnn===========	chr9:134313995-134314275(+)$1	280	236	260	12.8274
bb[addddnnnnndddd]a]bb]e	chr22:20067762-20068006(+)$1	244	186	210	9.5652
gggacccooooooccc]a]ggggg	chr14:105486524-105486795(-)$1	271	125	149	9.4230
a[a"""bbnnnnnbb333a]a]bb	chr6:159048756-159049056(+)$1	300	53	77	12.2108
%%dddd[annnnna]dddd333cc	chr11:64658751-64658966(-)$1	215	179	203	9.6492
ccc[cccooooooccc]cccdddd	chr1:3476846-3477103(-)$1	257	222	246	9.1052
========oooooo==========	chr17:57228548-57228778(-)$1	230	67	91	9.4721
+gggggggnnnnnggggggg22ff	chr5:159912482-159912755(+)$1	273	173	197	11.3346
cc[ddddannnnna]ddddccc]b	chr19:13945266-13945519(-)$1	253	134	158	10.7074
cccbb!!annnnna22bb]cccdd	chr13:92002945-92003161(+)$1	216	84	108	10.8347
$$ffffffnnnnnffffff4444b	chr3:49057737-49058003(-)$1	266	129	153	9.7369
###a!!bbnnnnnbb22a333ggg	chr1:973964-974213(+)$1	249	50	74	12.6323
ccc[cccooooooccc]ccc]bb]	chr7:99691587-99691845(-)$1	258	35	59	9.3012
ffff!!bbnnnnnbb22ffffff]	chr3:49055820-49056130(-)$1	310	206	230	11.7945
:gggggggnnnnnggggggg:ccc	chr9:97846568-97846791(+)$1	223	102	126	10.7036
egggggggnnnnnggggggg333e	chr9:116971289-116971590(+)$1	301	229	253	12.4038
c[ccc[bbnnnnnbbccc4444cc	chr22:24497739-24497974(+)$1	235	133	157	12.5026
[gggggggnnnnnggggggg]aee	chr17:79860502-79860766(-)$1	264	99	123	12.5528
2ddddcccnnnnnccceeeee[cc	chr3:52302381-52302644(-)$1	263	47	71	10.2860
!!ccc[bbnnnnnbbccc22ccc]	chr22:22007616-22007871(+)$1	255	82	106	12.4557
c[ccc[bbnnnnnbb]cccccc44	chr7:111928904-111929108(+)$1	204	58	82	12.7604
cccddddnnnnndddd]ccc]ddd	chr9:97847849-97848087(+)$1	238	202	226	8.8559
ddd[bb[annnnna]bb]dddd]a	chr4:1216797-1217035(-)$1	238	101	125	9.7119
ffff[cccnnnnnccc]ffffffg	chr9:97848522-97848768(+)$1	246	173	197	11.5162
eeeee[bbnnnnnbb]eeeee]dd	chr7:1067658-1067909(-)$1	251	179	203	11.2465
:gggggggnnnnngggggggeeee	chr1:173760923-173761127(+)$1	204	14	38	11.3448
bb"""cccnnnnnccc333bb]dd	chr17:80189119-80189351(+)$1	232	87	111	11.0798
:gggggggnnnnngggggggeeee	chr1:173760911-173761123(+)$1	212	26	50	11.3448

#otherMatches

#Seq PSSM
cgcccgccaagccggggggcgcgg	chr13:113863808-113864055(+)$1	247	221	245	10.9908
CCCUCGGGGUCCACUGGGGGACAG	chr19:46523703-46523957(+)$1	254	93	117	9.3704
CUGGGCUCUGGUUGAUUCACAGAG	chr6:32938460-32938754(+)$1	294	45	69	11.7230
CUCCUGGCUUUUCGUGGUGGGCUC	chr18:12012992-12013259(+)$1	267	208	232	11.5298
AAUUUAAAAGGAGAUGGAAACUUA	chr11:57408161-57408416(+)$1	255	66	90	9.1461
UGCUUGACGUUUGGUGUGCUGGGG	chr19:46142219-46142514(-)$1	295	37	61	11.1696
CCUGCGGGAGAUGCUGCGGGACGU	chr2:231902493-231902754(+)$1	261	158	182	9.0601
AGCCCCAGGGCGACUGGACCGGGC	chr2:27435069-27435327(+)$1	258	47	71	10.8470
CAGGGUGUGCUGAGCUUUCUGAGU	chr1:205417041-205417265(-)$1	224	75	99	12.9510
AGGUGCUGGCCAGCAGACCAGCCA	chr11:64658740-64658951(-)$1	211	146	170	11.5502
ACAGGCUCCACUCGGGUGCCAGUG	chr2:97532853-97533107(-)$1	254	135	159	9.9374
UGUCCACCGCUCUGGUAGGCACUU	chr14:105934603-105934846(+)$1	243	53	77	12.1138
AACGGGACUGAGCGUCUCGUAGCG	chr9:97846549-97846768(+)$1	219	121	145	10.7036
CCUUUGCUAGCUCGGCUUGGGCUC	chr17:7476820-7477096(+)$1	276	207	231	9.5225
UGGCUAUAUUUUUUGUUGUUAGAU	chr13:92003760-92004006(+)$1	246	74	98	11.2720
GAGGCAGGGCCGGCAUGCCUCUGC	chr11:57408472-57408777(+)$1	305	177	201	12.6115
UGGCCUGCCCACUGCUGACCCAUU	chr3:38010696-38011007(+)$1	311	36	60	11.6667
CGCCUGCCCCAGUGUCUGCGCCGG	chr7:1062525-1062749(-)$1	224	160	184	9.4160
acgcgguggcucacaccuguaauc	chr22:42297234-42297453(+)$1	219	154	178	10.8068
CUGUGCCCUCGGCGGGCACGCGGA	chr3:184080669-184080945(+)$1	276	146	170	12.1403
GGGGGUUCAGGUAGCACCCCCACC	chr17:19247344-19247614(-)$1	270	99	123	12.7241
GGCGGGGACAGCUUCCUCUUCUGC	chr11:64655562-64655835(-)$1	273	249	273	9.8423
UAAAUUUAGCUAAUAUUUUUACUC	chr1:41222750-41222961(+)$1	211	40	64	11.2808
UGAUCCCUGGCUGGGGGAAGGGGA	chr6:32937880-32938116(+)$1	236	202	226	10.2576
CUGGAUCUCCCAAAGUAUCCAGUC	chr4:38869757-38870027(+)$1	270	31	55	11.1663
GGCGUCCUUCCGCGGAAGCCCAGU	chr9:97847407-97847623(+)$1	216	29	53	9.3637
GUUUUCGCCUCCUGUAGAGCUGAA	chr12:62996652-62996877(+)$1	225	92	116	11.1810
GAUGGCGUCACCCUGCUCAUCUCU	chr3:52302193-52302412(-)$1	219	154	178	8.9957
CUGCUGCUCAGAAAGUGGUGGUGG	chr9:134313995-134314275(+)$1	280	236	260	12.8274
gcgccgcggccugcgcgagggcgc	chr22:20067762-20068006(+)$1	244	186	210	9.5652
GUGGCCUUCGUGUGGGACGCACGG	chr14:105486524-105486795(-)$1	271	125	149	9.4230
GGAGGUGAAAGGGUCUGGUGCACA	chr6:159048756-159049056(+)$1	300	53	77	12.2108
CAGCCAGGACUACCGUGGCGACGC	chr11:64658751-64658966(-)$1	215	179	203	9.6492
guuaacaacaaugugucaacgugg	chr1:3476846-3477103(-)$1	257	222	246	9.1052
AAAACAUUGAUAUAAAUGUUUUUU	chr17:57228548-57228778(-)$1	230	67	91	9.4721
UCAGCAAGUCUCUCUUGCUGCUGC	chr5:159912482-159912755(+)$1	273	173	197	11.3346
GAUCGUGCUGUGUGUCAUGUCUGU	chr19:13945266-13945519(-)$1	253	134	158	10.7074
UAGUGAAGUAGAUUAGCAUCUACU	chr13:92002945-92003161(+)$1	216	84	108	10.8347
GGACCCAGGACCUCUGGGUAGGGC	chr3:49057737-49058003(-)$1	266	129	153	9.7369
AGGUGACCAAAAGGGGAGAAAGGC	chr1:973964-974213(+)$1	249	50	74	12.6323
CUUUCCACUGCUCUGGUAAGUGCC	chr7:99691587-99691845(-)$1	258	35	59	9.3012
UGUGGAUCAAGGAGACGCGCACCC	chr3:49055820-49056130(-)$1	310	206	230	11.7945
AACGGGACUGAGCGUCUCGUAGCG	chr9:97846568-97846791(+)$1	223	102	126	10.7036
UGGAUGUAAGCCCUACAUCCAGGA	chr9:116971289-116971590(+)$1	301	229	253	12.4038
cucaaugcugugugcuugcucugu	chr22:24497739-24497974(+)$1	235	133	157	12.5026
GUGGGGGCGGGGGGCCCCCAGCGG	chr17:79860502-79860766(-)$1	264	99	123	12.5528
AACAUGUCUAUGUGAUCAUCCGAA	chr3:52302381-52302644(-)$1	263	47	71	10.2860
aagggagcuugcugccucacucca	chr22:22007616-22007871(+)$1	255	82	106	12.4557
gacacauccaaaugaagugcugca	chr7:111928904-111929108(+)$1	204	58	82	12.7604
GAAAGUUGCAAAAAUUCUUCUUAC	chr9:97847849-97848087(+)$1	238	202	226	8.8559
GGGGCCGGGGACUCGGGGCUCUGU	chr4:1216797-1217035(-)$1	238	101	125	9.7119
GUGCGUGUCUGAAAUGGGUACUCC	chr9:97848522-97848768(+)$1	246	173	197	11.5162
GAGCCGCGCUUCUCGGGGCUCCGC	chr7:1067658-1067909(-)$1	251	179	203	11.2465
aagagaacguaggguucuuugaag	chr1:173760923-173761127(+)$1	204	14	38	11.3448
GUUUUGGGUUCCCCCCUUCGCCCC	chr17:80189119-80189351(+)$1	232	87	111	11.0798
aagagaacguaggguucuuugaag	chr1:173760911-173761123(+)$1	212	26	50	11.3448

#DB
(((((.((.....)).))))))))	chr13:113863808-113864055(+)$1	1	221	245	10.9908
(((((((......))))))).)))	chr19:46523703-46523957(+)$1	1	93	117	9.3704
(((((.((.....)).)).)))))	chr6:32938460-32938754(+)$1	1	45	69	11.7230
(((.(.((.....)).).))))))	chr18:12012992-12013259(+)$1	1	208	232	11.5298
(.(((..(......)..))).)))	chr11:57408161-57408416(+)$1	1	66	90	9.1461
.((...((.....))..)).))))	chr19:46142219-46142514(-)$1	1	37	61	11.1696
(((((((......))))))).)).	chr2:231902493-231902754(+)$1	1	158	182	9.0601
.(((((((.....)))....))))	chr2:27435069-27435327(+)$1	1	47	71	10.8470
(((((.((.....)).))))))).	chr1:205417041-205417265(-)$1	1	75	99	12.9510
.(((.(((.....)))))).))).	chr11:64658740-64658951(-)$1	1	146	170	11.5502
((.(((.((.....)).))).)))	chr2:97532853-97533107(-)$1	1	135	159	9.9374
)(((.(((.....))).)))((((	chr14:105934603-105934846(+)$1	1	53	77	12.1138
.(((((((.....))))))).(((	chr9:97846549-97846768(+)$1	1	121	145	10.7036
(((..(((.....)))..)))...	chr17:7476820-7477096(+)$1	1	207	231	9.5225
((((.(((.....))).)))))))	chr13:92003760-92004006(+)$1	1	74	98	11.2720
((((((.(.....).)))))))((	chr11:57408472-57408777(+)$1	1	177	201	12.6115
.((.(.((.....)).).))))).	chr3:38010696-38011007(+)$1	1	36	60	11.6667
(((..((......))..)))))))	chr7:1062525-1062749(-)$1	1	160	184	9.4160
(((.((((.....)))))))....	chr22:42297234-42297453(+)$1	1	154	178	10.8068
((((((((.....))))))).)..	chr3:184080669-184080945(+)$1	1	146	170	12.1403
((((((.(.....).))))))).)	chr17:19247344-19247614(-)$1	1	99	123	12.7241
((.(((((.....))))).)))))	chr11:64655562-64655835(-)$1	1	249	273	9.8423
((((..((.....))..)))))))	chr1:41222750-41222961(+)$1	1	40	64	11.2808
(..(((((.....)))))..))).	chr6:32937880-32938116(+)$1	1	202	226	10.2576
((((((((.....)).)))))).)	chr4:38869757-38870027(+)$1	1	31	55	11.1663
(((.(((......))).)))((((	chr9:97847407-97847623(+)$1	1	29	53	9.3637
(((((.((.....))))))).)))	chr12:62996652-62996877(+)$1	1	92	116	11.1810
.((((((......))).)))))))	chr3:52302193-52302412(-)$1	1	154	178	8.9957
((((((((.....)))))))))))	chr9:134313995-134314275(+)$1	1	236	260	12.8274
((.(((((.....)))).).)).)	chr22:20067762-20068006(+)$1	1	186	210	9.5652
(((((((......))).).)))))	chr14:105486524-105486795(-)$1	1	125	149	9.4230
(.(...((.....))...).).))	chr6:159048756-159049056(+)$1	1	53	77	12.2108
..((((.(.....).))))...))	chr11:64658751-64658966(-)$1	1	179	203	9.6492
(((.(((......))).)))((((	chr1:3476846-3477103(-)$1	1	222	246	9.1052
((((((((......))))))))))	chr17:57228548-57228778(-)$1	1	67	91	9.4721
.(((((((.....)))))))..))	chr5:159912482-159912755(+)$1	1	173	197	11.3346
((.(((((.....).))))))).)	chr19:13945266-13945519(-)$1	1	134	158	10.7074
(((((..(.....)..)).)))))	chr13:92002945-92003161(+)$1	1	84	108	10.8347
..((((((.....))))))....)	chr3:49057737-49058003(-)$1	1	129	153	9.7369
...(..((.....))..)...)))	chr1:973964-974213(+)$1	1	50	74	12.6323
(((.(((......))).))).)).	chr7:99691587-99691845(-)$1	1	35	59	9.3012
((((..((.....))..)))))).	chr3:49055820-49056130(-)$1	1	206	230	11.7945
.(((((((.....))))))).(((	chr9:97846568-97846791(+)$1	1	102	126	10.7036
((((((((.....)))))))...)	chr9:116971289-116971590(+)$1	1	229	253	12.4038
(.(((.((.....)))))....))	chr22:24497739-24497974(+)$1	1	133	157	12.5026
.(((((((.....))))))).)((	chr17:79860502-79860766(-)$1	1	99	123	12.5528
.))))(((.....)))(((((.((	chr3:52302381-52302644(-)$1	1	47	71	10.2860
..(((.((.....)))))..))).	chr22:22007616-22007871(+)$1	1	82	106	12.4557
(.(((.((.....)).))))))..	chr7:111928904-111929108(+)$1	1	58	82	12.7604
(((((((.....)))).))).)))	chr9:97847849-97848087(+)$1	1	202	226	8.8559
(((.((.(.....).)).)))).)	chr4:1216797-1217035(-)$1	1	101	125	9.7119
((((.(((.....))).))))))(	chr9:97848522-97848768(+)$1	1	173	197	11.5162
(((((.((.....)).))))).))	chr7:1067658-1067909(-)$1	1	179	203	11.2465
.(((((((.....)))))))((((	chr1:173760923-173761127(+)$1	1	14	38	11.3448
((...(((.....)))...)).))	chr17:80189119-80189351(+)$1	1	87	111	11.0798
.(((((((.....)))))))((((	chr1:173760911-173761123(+)$1	1	26	50	11.3448

#PSSM
c : 0.21	g : 0.14	e : 0.10	[ : 0.08	: : 0.07	h : 0.05	f : 0.05	d : 0.03	a : 0.03	= : 0.03	b : 0.03	" : 0.01	% : 0.01	+ : 0.01	$ : 0.01	# : 0.01	2 : 0.01	! : 0.01	
g : 0.28	c : 0.21	[ : 0.07	b : 0.07	e : 0.07	h : 0.05	d : 0.05	f : 0.05	! : 0.03	= : 0.03	% : 0.01	$ : 0.01	# : 0.01	
g : 0.28	c : 0.24	d : 0.07	[ : 0.07	f : 0.07	h : 0.05	e : 0.05	b : 0.03	= : 0.03	! : 0.01	a : 0.01	# : 0.01	" : 0.01	
g : 0.23	c : 0.14	[ : 0.12	d : 0.08	e : 0.08	f : 0.07	" : 0.05	a : 0.05	h : 0.03	b : 0.03	! : 0.03	= : 0.03	
g : 0.23	c : 0.17	d : 0.12	! : 0.08	[ : 0.07	e : 0.07	b : 0.05	" : 0.05	a : 0.03	f : 0.03	= : 0.03	h : 0.01	
c : 0.24	g : 0.21	[ : 0.17	! : 0.08	d : 0.08	" : 0.03	b : 0.03	e : 0.03	f : 0.03	= : 0.03	
b : 0.30	c : 0.23	g : 0.17	[ : 0.08	d : 0.07	! : 0.03	e : 0.03	= : 0.03	f : 0.01	
b : 0.30	o : 0.14	c : 0.14	g : 0.14	a : 0.12	d : 0.03	e : 0.03	= : 0.03	f : 0.01	n : 0.01	
n : 0.80	o : 0.17	b : 0.01	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
n : 0.80	o : 0.17	d : 0.01	
b : 0.30	c : 0.23	g : 0.17	a : 0.10	d : 0.05	o : 0.03	e : 0.03	n : 0.01	= : 0.01	f : 0.01	
b : 0.32	c : 0.23	g : 0.17	] : 0.08	d : 0.05	e : 0.03	= : 0.03	a : 0.01	2 : 0.01	f : 0.01	
c : 0.26	g : 0.21	] : 0.14	2 : 0.12	d : 0.08	e : 0.05	b : 0.03	= : 0.03	3 : 0.01	f : 0.01	
g : 0.23	] : 0.17	2 : 0.12	e : 0.08	c : 0.07	d : 0.07	b : 0.05	a : 0.03	f : 0.03	= : 0.03	3 : 0.03	h : 0.01	4 : 0.01	
g : 0.24	c : 0.23	e : 0.10	] : 0.07	f : 0.07	b : 0.05	h : 0.03	= : 0.03	a : 0.03	3 : 0.03	d : 0.03	4 : 0.01	2 : 0.01	
g : 0.24	c : 0.21	] : 0.07	e : 0.07	f : 0.07	h : 0.05	d : 0.05	b : 0.03	4 : 0.03	2 : 0.03	= : 0.03	a : 0.03	3 : 0.03	
g : 0.28	c : 0.23	e : 0.08	] : 0.07	h : 0.05	4 : 0.05	f : 0.05	b : 0.03	2 : 0.03	= : 0.03	3 : 0.03	d : 0.01	
] : 0.16	c : 0.14	e : 0.12	g : 0.10	f : 0.08	d : 0.07	h : 0.05	4 : 0.05	3 : 0.05	: : 0.03	= : 0.03	b : 0.03	a : 0.01	2 : 0.01	
c : 0.17	e : 0.12	g : 0.12	f : 0.10	d : 0.08	h : 0.05	b : 0.05	4 : 0.05	] : 0.05	a : 0.03	= : 0.03	3 : 0.03	: : 0.01	2 : 0.01	[ : 0.01	
c : 0.17	e : 0.14	f : 0.12	d : 0.12	g : 0.08	] : 0.08	h : 0.05	b : 0.05	4 : 0.05	= : 0.03	: : 0.01	2 : 0.01	3 : 0.01	
e : 0.17	d : 0.12	g : 0.10	] : 0.10	c : 0.10	f : 0.08	h : 0.05	b : 0.05	2 : 0.03	: : 0.03	4 : 0.03	a : 0.03	= : 0.03	

#score	610.7021715139659
#seq	56
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_CDS_m1_run2.txt

#BEAR
g]cccddddyyyyyyyyyyyyyyyyddd	chr16:2807670-2807910(+)$1	240	60	88	22.2136
ccc[eeeee^^^^^^^^^^^^^^^^^^^	chr3:58296127-58296419(+)$1	292	62	90	20.3887
!ccc[abb^^^^^^^^^^^^^^^^^^^^	chr22:28386672-28386925(-)$1	253	61	89	20.3255
ff!!bb[bbwwwwwwwwwwwwwwbb]bb	chr16:52484311-52484580(-)$1	269	6	34	20.4090
^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr12:53567422-53567698(-)$1	276	79	107	20.1737
e####ddddtttttttttttdddd4444	chr2:20527012-20527248(-)$1	236	179	207	18.1202
iiiiiiiiiuuuuuuuuuuuuiiiiiii	chr22:29668073-29668354(+)$1	281	34	62	20.8297
f!!ffffffwwwwwwwwwwwwwwfffff	chr8:25176973-25177242(+)$1	269	177	205	21.6680
iii!!eeeeevvvvvvvvvvvvveeeee	chr5:95224556-95224806(-)$1	250	7	35	22.3449
!ccceeeeewwwwwwwwwwwwwweeeee	chr17:78279925-78280172(+)$1	247	174	202	22.9581
=========^^^^^^^^^^^^^^^^^^^	chr13:52997633-52997885(-)$1	252	186	214	20.5341
!!dddd[dddduuuuuuuuuuuudddd]	chr7:73932349-73932616(+)$1	267	93	121	20.4641
####cccyyyyyyyyyyyyyyyyccc44	chr1:207268524-207268787(+)$1	263	65	93	23.6059
eeee[ddddwwwwwwwwwwwwwwdddd]	chr17:74763345-74763627(+)$1	282	188	216	21.9037
!!bb!!eeeeettttttttttteeeee3	chr12:112471039-112471298(-)$1	259	115	143	19.0130
ddd[ffffffvvvvvvvvvvvvvfffff	chr2:198283525-198283784(-)$1	259	104	132	20.5336
[ccc^^^^^^^^^^^^^^^^^^ccc]ee	chr7:23238965-23239260(+)$1	295	165	193	19.7794
[bb[ffffffuuuuuuuuuuuuffffff	chr2:101554100-101554358(+)$1	258	91	119	20.3878
:ffffffyyyyyyyyyyyyyyyyfffff	chr17:65353536-65353804(-)$1	268	210	238	21.5228
g:gggggggwwwwwwwwwwwwwwggggg	chr3:38293698-38293956(+)$1	258	65	93	21.2617
d[a[eeeee^^^^^^^^^^^^^^^^^^^	chr17:38434326-38434575(+)$1	249	80	108	20.2608
^^^^^^^^^^^^^^^^^^^^^^^fffff	chr14:20920158-20920436(-)$1	278	100	128	19.6688
ccc::ddddyyyyyyyyyyyyyyyyddd	chr15:43350506-43350768(-)$1	262	92	120	20.6055
eeeee^^^^^^^^^^^^^^^^^^eeeee	chr8:125601822-125602083(-)$1	261	145	173	20.2687
""bb[cccyyyyyyyyyyyyyyyyccc]	chr7:131163271-131163546(+)$1	275	80	108	23.2405
[iiiiiiiiitttttttttttiiiiiii	chr1:29485852-29486144(-)$1	292	123	151	18.5448
!gggggggyyyyyyyyyyyyyyyygggg	chr17:48829445-48829720(+)$1	275	37	65	23.4711
eeeee[cccuuuuuuuuuuuuccc22ee	chr1:100345306-100345607(+)$1	301	177	205	20.8170
gggg!!ddddvvvvvvvvvvvvvddddg	chr2:112582467-112582716(-)$1	249	209	237	21.4666
cccffffffwwwwwwwwwwwwwwfffff	chr13:113835406-113835659(-)$1	253	158	186	21.5912
=========^^^^^^^^^^^^^^^^^^^	chr7:92887355-92887626(+)$1	271	57	85	20.5341
[a[gggggggtttttttttttggggggg	chr2:160176799-160177117(-)$1	318	52	80	18.6595
[bb[bb[bbvvvvvvvvvvvvvbb]bb]	chr1:235338567-235338826(-)$1	259	98	126	19.9552
eeeffffffwwwwwwwwwwwwwwfffff	chr2:24087640-24087911(-)$1	271	234	262	21.3663
ccc!!eeeeevvvvvvvvvvvvveeeee	chr14:35786333-35786618(+)$1	285	29	57	22.2919
gggggggyyyyyyyyyyyyyyyyggggg	chr10:86259492-86259798(+)$1	306	114	142	23.2006
ccc^^^^^^^^^^^^^^^^^^^^^^^cc	chr17:4846299-4846608(+)$1	309	1	29	20.4221
iiiiiiiii^^^^^^^^^^^^^^^^^^^	chr2:228217073-228217346(+)$1	273	166	194	20.1652
"ffffffyyyyyyyyyyyyyyyyfffff	chr1:146696512-146696783(-)$1	271	100	128	22.5971
eeee^^^^^^^^^^^^^^^^^^^eeeee	chr5:167922171-167922450(+)$1	279	123	151	20.2812
eeeee[ayyyyyyyyyyyyyyyya]eee	chr17:48548188-48548500(+)$1	312	139	167	23.2196
!ccc^^^^^^^^^^^^^^^^^^^^ccc>	chr11:2970310-2970620(-)$1	310	100	128	20.6229
[bb"""cccwwwwwwwwwwwwwwccc44	chr10:104123342-104123626(+)$1	284	86	114	22.4735
[a[eeeee^^^^^^^^^^^^^^^^^^ee	chr20:48561808-48562070(+)$1	262	145	173	20.8959
$bba[eeeeeuuuuuuuuuuuueeeee]	chr7:23015787-23016036(-)$1	249	164	192	21.3923
f!!ccc[bbtttttttttttbb]ccc44	chr2:234182453-234182761(+)$1	308	229	257	18.1826
e!!ffffffuuuuuuuuuuuuffffff]	chr4:100125256-100125514(-)$1	258	125	153	20.5101
fffffeeeeevvvvvvvvvvvvveeeee	chr3:100039508-100039755(+)$1	247	54	82	21.4430
^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr11:46439422-46439742(-)$1	320	115	143	19.8443
eeeeeeedddduuuuuuuuuuuudddd3	chr1:28887031-28887281(+)$1	250	121	149	20.4070
!!eeeee[bbtttttttttttbb]eeee	chr6:155579053-155579295(-)$1	242	125	153	18.9553
iiiiiiiiiwwwwwwwwwwwwwwiiiii	chr10:79799829-79800097(+)$1	268	62	90	22.2165
gggggg[cccvvvvvvvvvvvvvccc]g	chr5:134116717-134116970(+)$1	253	195	223	21.8171
eeeeeeeyyyyyyyyyyyyyyyyeeeee	chr16:69170494-69170767(+)$1	273	48	76	23.2930
###bbddddwwwwwwwwwwwwwwdddd]	chr18:29437774-29438066(-)$1	292	19	47	21.7547
#ccc^^^^^^^^^^^^^^^^^^^^^^^^	chr5:5466326-5466596(+)$1	270	91	119	20.7180
dd"""dddduuuuuuuuuuuudddd333	chr12:72007045-72007343(-)$1	298	228	256	20.7557
:dddd[cccvvvvvvvvvvvvvcccddd	chr2:239096744-239097006(-)$1	262	21	49	20.0692
hh::eeeeexxxxxxxxxxxxxxxeeee	chrX:107814935-107815177(+)$1	242	79	107	18.9856
ee[a[ddddwwwwwwwwwwwwwwdddd]	chr9:95025187-95025443(-)$1	256	29	57	22.1636
ee!!ddddyyyyyyyyyyyyyyyydddd	chr18:56018097-56018347(+)$1	250	40	68	22.8999
ccddddeeeeeuuuuuuuuuuuueeeee	chr2:32688114-32688406(+)$1	292	236	264	20.6752
ff!!eeeeexxxxxxxxxxxxxxxeeee	chr5:139866424-139866708(+)$1	284	58	86	21.2590
(ccc^^^^^^^^^^^^^^^^^^^^ccc9	chr1:114310900-114311168(-)$1	268	119	147	19.4921
ccc[dddd^^^^^^^^^^^^^^^^^^^d	chr2:172930877-172931132(+)$1	255	39	67	20.1902
ddddeeeeewwwwwwwwwwwwwweeeee	chr13:113887371-113887615(+)$1	244	92	120	22.0778
:hhhhhhhhwwwwwwwwwwwwwwhhhhh	chr11:85373344-85373620(-)$1	276	87	115	18.1585

#otherMatches

#Seq PSSM
AUGGCUCUGUCCUUUAUAUUUCCUUCAG	chr16:2807670-2807910(+)$1	240	60	88	22.2136
AGAAUGAAAUUUAAUAUGACUUUUUUUU	chr3:58296127-58296419(+)$1	292	62	90	20.3887
UGCUUGAGUCUAAACUCUCUUCUUUCUC	chr22:28386672-28386925(-)$1	253	61	89	20.3255
GUCAGACCUAUCAACAUUGCAACAGUUC	chr16:52484311-52484580(-)$1	269	6	34	20.4090
aaaaaacacuuaauuguacacuuuUCAC	chr12:53567422-53567698(-)$1	276	79	107	20.1737
UAAAUGUUUGCAAAUACUAAGAACUUAC	chr2:20527012-20527248(-)$1	236	179	207	18.1202
AAAGAAUUCUUCCUGCCACGUGAAUUCU	chr22:29668073-29668354(+)$1	281	34	62	20.8297
UAUUACCAAGUCAAGCAGCCCUGUUGGU	chr8:25176973-25177242(+)$1	269	177	205	21.6680
GAUAAAGCAGGUAGGUAUCAUCACUGUU	chr5:95224556-95224806(-)$1	250	7	35	22.3449
AGACGAGCCUCUCUUCCGGUCCUGGUUU	chr17:78279925-78280172(+)$1	247	174	202	22.9581
GAAAAUUUAAAUACUCUUUUAACCAAAU	chr13:52997633-52997885(-)$1	252	186	214	20.5341
CCCCUCUCCUGGACUCUCCCCUACAGGC	chr7:73932349-73932616(+)$1	267	93	121	20.4641
ucaagacucacaacuccuaacacgucau	chr1:207268524-207268787(+)$1	263	65	93	23.6059
GUAAUGGAAUUACuguucuuauuuucuc	chr17:74763345-74763627(+)$1	282	188	216	21.9037
CCACCUGUCUUUACCAGUUUCCAAGACU	chr12:112471039-112471298(-)$1	259	115	143	19.0130
UCUAGGCUUCUAUUCUGCUGCUUGAAGU	chr2:198283525-198283784(-)$1	259	104	132	20.5336
AGCAGUCAAGCAGCAACAUUUAUGUCGC	chr7:23238965-23239260(+)$1	295	165	193	19.7794
UUCAAAUGUUGCAUUUUCCACAGGCAUU	chr2:101554100-101554358(+)$1	258	91	119	20.3878
CAUUGAACAUUCUUCCAUUAACUUUCAA	chr17:65353536-65353804(-)$1	268	210	238	21.5228
AAAGUGGAUUUAUGUAACUUCUCAUUCA	chr3:38293698-38293956(+)$1	258	65	93	21.2617
GUGUGUGGUCUUUAUUUUGUUUUUUUUC	chr17:38434326-38434575(+)$1	249	80	108	20.2608
AUUAUAACUUCCAUUUCUAUCUCCCUAG	chr14:20920158-20920436(-)$1	278	100	128	19.6688
GCCUUGGUGAUUCUCCUCAUUCCCCCAC	chr15:43350506-43350768(-)$1	262	92	120	20.6055
GUCUGAUAAACCCACUUCAAGAACAGAU	chr8:125601822-125602083(-)$1	261	145	173	20.2687
uucuuuuuuuuuuuuuuuuuuuuuAAAC	chr7:131163271-131163546(+)$1	275	80	108	23.2405
UUAUUUAUUUGAACCUUCCAAAGGUGGA	chr1:29485852-29486144(-)$1	292	123	151	18.5448
UGGGCCAACACUUUCUCAUAAAAAUUGG	chr17:48829445-48829720(+)$1	275	37	65	23.4711
GUUGGAUGCUGCUAGGAAUUUGCAACCC	chr1:100345306-100345607(+)$1	301	177	205	20.8170
GCUUCCUCCAGACUAGCUAGAAGUGGAA	chr2:112582467-112582716(-)$1	249	209	237	21.4666
UAGUCAGAAGAACAAAAGGAUGAUUCUG	chr13:113835406-113835659(-)$1	253	158	186	21.5912
UGGAUAGUAUUCUUAUUAUAAUAAAAAA	chr7:92887355-92887626(+)$1	271	57	85	20.5341
UCAUGUAUUUUAUAUCAAUUUAAAUGCA	chr2:160176799-160177117(-)$1	318	52	80	18.6595
UCUUUCUCUUUCAGCAAAUAGUAGUGAU	chr1:235338567-235338826(-)$1	259	98	126	19.9552
UAAGCAAUGUCAUAGAUGUUUAUUAUUG	chr2:24087640-24087911(-)$1	271	234	262	21.3663
guauaugggaguuuauuauacuauccca	chr14:35786333-35786618(+)$1	285	29	57	22.2919
CCUACCCCAUCUCUCUCUGCACAGGGUG	chr10:86259492-86259798(+)$1	306	114	142	23.2006
GGCCUCCUCAUUACCCGAACCAUUCAGC	chr17:4846299-4846608(+)$1	309	1	29	20.4221
CGUGGUGGGUCUGCUGCCGCCACUUCUA	chr2:228217073-228217346(+)$1	273	166	194	20.1652
UUGUCUUUUGUCAUCCUUUCUUUAGGAC	chr1:146696512-146696783(-)$1	271	100	128	22.5971
GCCUUUCUCUUUUUGUCUACCCCAGGUU	chr5:167922171-167922450(+)$1	279	123	151	20.2812
GCUCACCUGAUCCCUCUGCACGUGCUGA	chr17:48548188-48548500(+)$1	312	139	167	23.2196
UCCUUUCAAUUUUUUUCCCCAUUUAGGU	chr11:2970310-2970620(-)$1	310	100	128	20.6229
UGUUACAGAUAUUUCCCCCCUCUUCUUC	chr10:104123342-104123626(+)$1	284	86	114	22.4735
UUGUUCCAAAUACCAGAAUUACAUCAUG	chr20:48561808-48562070(+)$1	262	145	173	20.8959
AUGCCCAGUGUUUCUCUUCAGUCACUGU	chr7:23015787-23016036(-)$1	249	164	192	21.3923
GCCAGGUGAAACUAUUAUCCUCUCUUAG	chr2:234182453-234182761(+)$1	308	229	257	18.1826
UCCUGUUACUUUAAGUACAAUGUAAUAC	chr4:100125256-100125514(-)$1	258	125	153	20.5101
GUUUUGAAUUAAAUUUACUUAAAAAUUC	chr3:100039508-100039755(+)$1	247	54	82	21.4430
UUUUUCCCUCUUUUCCUCUACCUAGAGA	chr11:46439422-46439742(-)$1	320	115	143	19.8443
CUGGCUACUGCUUUGUAGAAUUUGCAGA	chr1:28887031-28887281(+)$1	250	121	149	20.4070
UUAGAGUUGGCAGACAUAGACCCUACUC	chr6:155579053-155579295(-)$1	242	125	153	18.9553
GAAAAGGGACUAUUAAUGAAAUCUUUCU	chr10:79799829-79800097(+)$1	268	62	90	22.2165
GAGAAUGACCAGGAUGCCAUGGAGGUGA	chr5:134116717-134116970(+)$1	253	195	223	21.8171
AGUACCGGUACCUGAUGAAUUUGUGGUA	chr16:69170494-69170767(+)$1	273	48	76	23.2930
UAAACCUUUGGUAAAAAAAAAAAAAAGU	chr18:29437774-29438066(-)$1	292	19	47	21.7547
UUGCCUUUUUAAUUUUUUUUUCAAUCCA	chr5:5466326-5466596(+)$1	270	91	119	20.7180
GGUAAGAAAAACUUAACAUUCUUUUGGU	chr12:72007045-72007343(-)$1	298	228	256	20.7557
AUAGUUCCCUCUCAUUUGCUCUGGGACU	chr2:239096744-239097006(-)$1	262	21	49	20.0692
AUAAUCCCUUUUCUUUUUAAUAAUAGGG	chrX:107814935-107815177(+)$1	242	79	107	18.9856
AAUGAAUAAAUACAGUUUCUUUCUUAUG	chr9:95025187-95025443(-)$1	256	29	57	22.1636
CUAUAGUUUUUAAAUGUUGCCUUUGAUU	chr18:56018097-56018347(+)$1	250	40	68	22.8999
GUAGCUUUGCAGUCUCUCUCUCAUGCAA	chr2:32688114-32688406(+)$1	292	236	264	20.6752
UUAUGGGCCUUUGUCUUAUUCUUUGGUC	chr5:139866424-139866708(+)$1	284	58	86	21.2590
CUUGCUUACCCUUUGUUUAACAACCAAA	chr1:114310900-114311168(-)$1	268	119	147	19.4921
UCAUUAAGUAUUUAUUUUUAUUUUCCUU	chr2:172930877-172931132(+)$1	255	39	67	20.1902
UAGUCCUGUUUCUUACUGUCUAUACAGG	chr13:113887371-113887615(+)$1	244	92	120	22.0778
AUUUAGCAUCCUUGUUUUUCUUUGUGCU	chr11:85373344-85373620(-)$1	276	87	115	18.1585

#DB
).)))((((................)))	chr16:2807670-2807910(+)$1	1	60	88	22.2136
(((.(((((...................	chr3:58296127-58296419(+)$1	1	62	90	20.3887
.(((.(((....................	chr22:28386672-28386925(-)$1	1	61	89	20.3255
((..((.((..............)).))	chr16:52484311-52484580(-)$1	1	6	34	20.4090
.......................)))))	chr12:53567422-53567698(-)$1	1	79	107	20.1737
(....((((...........))))....	chr2:20527012-20527248(-)$1	1	179	207	18.1202
(((((((((............)))))))	chr22:29668073-29668354(+)$1	1	34	62	20.8297
(..((((((..............)))))	chr8:25176973-25177242(+)$1	1	177	205	21.6680
(((..(((((.............)))))	chr5:95224556-95224806(-)$1	1	7	35	22.3449
.((((((((..............)))))	chr17:78279925-78280172(+)$1	1	174	202	22.9581
(((((((((...................	chr13:52997633-52997885(-)$1	1	186	214	20.5341
..((((.((((............)))).	chr7:73932349-73932616(+)$1	1	93	121	20.4641
....(((................)))..	chr1:207268524-207268787(+)$1	1	65	93	23.6059
((((.((((..............)))).	chr17:74763345-74763627(+)$1	1	188	216	21.9037
..((..(((((...........))))).	chr12:112471039-112471298(-)$1	1	115	143	19.0130
(((.((((((.............)))))	chr2:198283525-198283784(-)$1	1	104	132	20.5336
.(((..................))).))	chr7:23238965-23239260(+)$1	1	165	193	19.7794
.((.((((((............))))))	chr2:101554100-101554358(+)$1	1	91	119	20.3878
.((((((................)))))	chr17:65353536-65353804(-)$1	1	210	238	21.5228
).(((((((..............)))))	chr3:38293698-38293956(+)$1	1	65	93	21.2617
(.(.(((((...................	chr17:38434326-38434575(+)$1	1	80	108	20.2608
.......................)))))	chr14:20920158-20920436(-)$1	1	100	128	19.6688
)))..((((................)))	chr15:43350506-43350768(-)$1	1	92	120	20.6055
(((((..................)))))	chr8:125601822-125602083(-)$1	1	145	173	20.2687
..((.(((................))).	chr7:131163271-131163546(+)$1	1	80	108	23.2405
.(((((((((...........)))))))	chr1:29485852-29486144(-)$1	1	123	151	18.5448
.(((((((................))))	chr17:48829445-48829720(+)$1	1	37	65	23.4711
(((((.(((............)))..))	chr1:100345306-100345607(+)$1	1	177	205	20.8170
((((..((((.............)))))	chr2:112582467-112582716(-)$1	1	209	237	21.4666
(((((((((..............)))))	chr13:113835406-113835659(-)$1	1	158	186	21.5912
(((((((((...................	chr7:92887355-92887626(+)$1	1	57	85	20.5341
.(.(((((((...........)))))))	chr2:160176799-160177117(-)$1	1	52	80	18.6595
.((.((.((.............)).)).	chr1:235338567-235338826(-)$1	1	98	126	19.9552
(((((((((..............)))))	chr2:24087640-24087911(-)$1	1	234	262	21.3663
(((..(((((.............)))))	chr14:35786333-35786618(+)$1	1	29	57	22.2919
(((((((................)))))	chr10:86259492-86259798(+)$1	1	114	142	23.2006
(((.......................))	chr17:4846299-4846608(+)$1	1	1	29	20.4221
(((((((((...................	chr2:228217073-228217346(+)$1	1	166	194	20.1652
.((((((................)))))	chr1:146696512-146696783(-)$1	1	100	128	22.5971
((((...................)))))	chr5:167922171-167922450(+)$1	1	123	151	20.2812
(((((.(................).)))	chr17:48548188-48548500(+)$1	1	139	167	23.2196
.(((....................))).	chr11:2970310-2970620(-)$1	1	100	128	20.6229
.((...(((..............)))..	chr10:104123342-104123626(+)$1	1	86	114	22.4735
.(.(((((..................))	chr20:48561808-48562070(+)$1	1	145	173	20.8959
.(((.(((((............))))).	chr7:23015787-23016036(-)$1	1	164	192	21.3923
(..(((.((...........)).)))..	chr2:234182453-234182761(+)$1	1	229	257	18.1826
(..((((((............)))))).	chr4:100125256-100125514(-)$1	1	125	153	20.5101
)))))(((((.............)))))	chr3:100039508-100039755(+)$1	1	54	82	21.4430
.......................)))))	chr11:46439422-46439742(-)$1	1	115	143	19.8443
(((((((((((............)))).	chr1:28887031-28887281(+)$1	1	121	149	20.4070
..(((((.((...........)).))))	chr6:155579053-155579295(-)$1	1	125	153	18.9553
(((((((((..............)))))	chr10:79799829-79800097(+)$1	1	62	90	22.2165
((((((.(((.............))).)	chr5:134116717-134116970(+)$1	1	195	223	21.8171
(((((((................)))))	chr16:69170494-69170767(+)$1	1	48	76	23.2930
...((((((..............)))).	chr18:29437774-29438066(-)$1	1	19	47	21.7547
.(((........................	chr5:5466326-5466596(+)$1	1	91	119	20.7180
((...((((............))))...	chr12:72007045-72007343(-)$1	1	228	256	20.7557
.((((.(((.............))))))	chr2:239096744-239097006(-)$1	1	21	49	20.0692
))..(((((...............))))	chrX:107814935-107815177(+)$1	1	79	107	18.9856
((.(.((((..............)))).	chr9:95025187-95025443(-)$1	1	29	57	22.1636
((..((((................))))	chr18:56018097-56018347(+)$1	1	40	68	22.8999
(((((((((((............)))))	chr2:32688114-32688406(+)$1	1	236	264	20.6752
((..(((((...............))))	chr5:139866424-139866708(+)$1	1	58	86	21.2590
.(((....................))).	chr1:114310900-114311168(-)$1	1	119	147	19.4921
(((.((((...................)	chr2:172930877-172931132(+)$1	1	39	67	20.1902
))))(((((..............)))))	chr13:113887371-113887615(+)$1	1	92	120	22.0778
.((((((((..............)))))	chr11:85373344-85373620(-)$1	1	87	115	18.1585

#PSSM
e : 0.17	c : 0.10	! : 0.10	[ : 0.10	g : 0.07	f : 0.07	i : 0.05	d : 0.05	^ : 0.04	# : 0.04	: : 0.04	= : 0.02	" : 0.02	$ : 0.01	h : 0.01	( : 0.01	
c : 0.19	e : 0.14	! : 0.08	f : 0.07	i : 0.07	d : 0.05	b : 0.05	g : 0.05	^ : 0.04	# : 0.04	= : 0.02	a : 0.02	h : 0.02	] : 0.01	: : 0.01	[ : 0.01	" : 0.01	
c : 0.19	e : 0.13	! : 0.08	b : 0.08	i : 0.07	d : 0.07	g : 0.07	^ : 0.04	# : 0.04	f : 0.04	[ : 0.04	= : 0.02	a : 0.01	" : 0.01	: : 0.01	h : 0.01	
e : 0.13	c : 0.11	f : 0.10	[ : 0.08	g : 0.08	! : 0.07	^ : 0.05	i : 0.05	d : 0.05	b : 0.04	# : 0.02	= : 0.02	: : 0.02	" : 0.02	a : 0.02	h : 0.01	
e : 0.19	^ : 0.13	f : 0.13	[ : 0.07	d : 0.07	g : 0.07	i : 0.05	! : 0.05	c : 0.04	b : 0.04	= : 0.02	" : 0.02	# : 0.01	: : 0.01	h : 0.01	
e : 0.20	d : 0.16	^ : 0.14	f : 0.11	g : 0.07	i : 0.05	c : 0.04	[ : 0.04	b : 0.02	= : 0.02	! : 0.02	a : 0.01	" : 0.01	h : 0.01	
e : 0.23	d : 0.14	^ : 0.14	f : 0.11	[ : 0.07	c : 0.07	i : 0.05	g : 0.05	= : 0.02	b : 0.01	a : 0.01	h : 0.01	
e : 0.19	d : 0.17	^ : 0.14	f : 0.08	y : 0.08	c : 0.07	b : 0.05	i : 0.05	g : 0.04	= : 0.02	[ : 0.01	h : 0.01	
^ : 0.19	e : 0.17	d : 0.14	y : 0.13	f : 0.08	b : 0.05	i : 0.05	c : 0.05	= : 0.02	g : 0.02	h : 0.01	
^ : 0.26	w : 0.19	y : 0.16	e : 0.08	u : 0.05	d : 0.04	t : 0.02	f : 0.02	v : 0.02	x : 0.02	i : 0.01	g : 0.01	b : 0.01	c : 0.01	
^ : 0.26	w : 0.19	y : 0.16	v : 0.11	u : 0.08	t : 0.07	d : 0.02	e : 0.02	x : 0.02	
^ : 0.26	w : 0.19	y : 0.16	u : 0.13	v : 0.11	t : 0.08	x : 0.02	
^ : 0.26	w : 0.19	y : 0.16	u : 0.13	v : 0.11	t : 0.08	x : 0.02	
^ : 0.26	w : 0.19	y : 0.16	u : 0.13	v : 0.11	t : 0.08	x : 0.02	
^ : 0.26	w : 0.19	y : 0.16	u : 0.13	v : 0.11	t : 0.08	x : 0.02	
^ : 0.26	w : 0.19	y : 0.16	u : 0.13	v : 0.11	t : 0.08	x : 0.02	
^ : 0.26	w : 0.19	y : 0.16	u : 0.13	v : 0.11	t : 0.08	x : 0.02	
^ : 0.26	w : 0.19	y : 0.16	u : 0.13	v : 0.11	t : 0.08	x : 0.02	
^ : 0.26	w : 0.19	y : 0.16	u : 0.13	v : 0.11	t : 0.08	x : 0.02	
^ : 0.26	w : 0.19	y : 0.16	u : 0.13	v : 0.11	t : 0.08	x : 0.02	
^ : 0.26	w : 0.19	y : 0.16	u : 0.13	v : 0.11	t : 0.05	x : 0.02	d : 0.01	b : 0.01	
^ : 0.26	w : 0.19	y : 0.16	v : 0.11	u : 0.07	d : 0.02	i : 0.02	b : 0.02	x : 0.02	t : 0.01	c : 0.01	g : 0.01	f : 0.01	
^ : 0.25	w : 0.19	y : 0.16	v : 0.08	u : 0.04	c : 0.04	d : 0.02	i : 0.02	e : 0.02	f : 0.02	b : 0.02	x : 0.02	g : 0.01	] : 0.01	
^ : 0.17	e : 0.17	f : 0.13	d : 0.11	c : 0.10	y : 0.07	g : 0.05	i : 0.04	b : 0.02	x : 0.02	a : 0.01	] : 0.01	h : 0.01	
e : 0.22	^ : 0.14	f : 0.13	c : 0.13	d : 0.11	g : 0.07	i : 0.04	y : 0.02	] : 0.02	b : 0.01	4 : 0.01	2 : 0.01	h : 0.01	
e : 0.23	d : 0.14	^ : 0.14	f : 0.13	c : 0.10	g : 0.07	i : 0.04	] : 0.02	4 : 0.01	2 : 0.01	b : 0.01	3 : 0.01	h : 0.01	
e : 0.28	d : 0.14	f : 0.13	^ : 0.11	g : 0.07	4 : 0.05	c : 0.05	i : 0.04	b : 0.02	] : 0.01	3 : 0.01	h : 0.01	
e : 0.25	f : 0.11	] : 0.11	^ : 0.10	g : 0.10	d : 0.07	4 : 0.05	i : 0.04	3 : 0.04	b : 0.01	c : 0.01	> : 0.01	9 : 0.01	h : 0.01	

#score	1402.3216681081806
#seq	67
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_UTR_m3_run1.txt

#BEAR
####ccc[annnnna]ccc333bba	chr6:86352557-86352819(-)$1	262	37	62	13.3184
cccccc[bbrrrrrrrrrbb]ccc]	chr17:75372093-75372353(+)$1	260	53	78	9.7946
bb[ddddbboooooobb]ddddbbE	chr7:1577319-1577596(+)$1	277	196	221	7.9816
gggggg[bbrrrrrrrrrbb]gggg	chr20:3906679-3906919(+)$1	240	67	92	9.5096
"""ccc[bbmmmmbbccc333dddd	chr14:54421081-54421331(-)$1	250	139	164	10.1439
=========nnnnn===========	chr20:57467353-57467621(+)$1	268	122	147	12.1323
$$$$$ddddnnnnndddd4444ccc	chr17:75316236-75316506(+)$1	270	14	39	12.0664
$$dddd[bbnnnnnbbdddd333ee	chr11:18034145-18034393(-)$1	248	203	228	12.6606
iiiiiddddnnnnndddd]iiiiii	chr12:8024784-8025096(-)$1	312	97	122	11.0225

#otherMatches

#Seq PSSM
aggggcugagggagugagugaagcg	chr6:86352557-86352819(-)$1	262	37	62	13.3184
CUAGCUAGCAGGGGAGAAGUCAGUA	chr17:75372093-75372353(+)$1	260	53	78	9.7946
GGAGGUGCUGACCAAGGACACCCCC	chr7:1577319-1577596(+)$1	277	196	221	7.9816
UGUGUUGGGAAGUGGUGACUGGAUA	chr20:3906679-3906919(+)$1	240	67	92	9.5096
AGGUCGAGCGCAGGCCGAAAGCUGU	chr14:54421081-54421331(-)$1	250	139	164	10.1439
UCGCCAAAGGGAGGCUUUGGCGGGG	chr20:57467353-57467621(+)$1	268	122	147	12.1323
CAACAGAUUGAAGAAAUUAGACCAG	chr17:75316236-75316506(+)$1	270	14	39	12.0664
UAGCGCCUGGAAGACAGCGCGGAGG	chr11:18034145-18034393(-)$1	248	203	228	12.6606
gaggccuuugugaggaagugucuuu	chr12:8024784-8025096(-)$1	312	97	122	11.0225

#DB
....(((.(.....).)))...))(	chr6:86352557-86352819(-)$1	1	37	62	13.3184
((((((.((.........)).))).	chr17:75372093-75372353(+)$1	1	53	78	9.7946
((.((((((......)).)))))))	chr7:1577319-1577596(+)$1	1	196	221	7.9816
((((((.((.........)).))))	chr20:3906679-3906919(+)$1	1	67	92	9.5096
...(((.((....)))))...))))	chr14:54421081-54421331(-)$1	1	139	164	10.1439
(((((((((.....)))))))))))	chr20:57467353-57467621(+)$1	1	122	147	12.1323
.....((((.....))))....)))	chr17:75316236-75316506(+)$1	1	14	39	12.0664
..((((.((.....))))))...))	chr11:18034145-18034393(-)$1	1	203	228	12.6606
(((((((((.....)))).))))))	chr12:8024784-8025096(-)$1	1	97	122	11.0225

#PSSM
$ : 0.22	# : 0.11	c : 0.11	b : 0.11	g : 0.11	" : 0.11	= : 0.11	i : 0.11	
$ : 0.22	# : 0.11	c : 0.11	b : 0.11	g : 0.11	" : 0.11	= : 0.11	i : 0.11	
# : 0.11	c : 0.11	[ : 0.11	g : 0.11	" : 0.11	= : 0.11	$ : 0.11	d : 0.11	i : 0.11	
c : 0.22	d : 0.22	# : 0.11	g : 0.11	= : 0.11	$ : 0.11	i : 0.11	
c : 0.33	d : 0.22	g : 0.11	= : 0.11	$ : 0.11	i : 0.11	
d : 0.44	c : 0.33	g : 0.11	= : 0.11	
[ : 0.44	d : 0.33	c : 0.11	= : 0.11	
b : 0.55	d : 0.22	[ : 0.11	= : 0.11	
b : 0.55	d : 0.22	a : 0.11	= : 0.11	
n : 0.55	r : 0.22	o : 0.11	m : 0.11	
n : 0.55	r : 0.22	o : 0.11	m : 0.11	
n : 0.55	r : 0.22	o : 0.11	m : 0.11	
n : 0.55	r : 0.22	o : 0.11	m : 0.11	
n : 0.55	r : 0.22	o : 0.11	b : 0.11	
r : 0.22	b : 0.22	d : 0.22	a : 0.11	o : 0.11	= : 0.11	
r : 0.22	b : 0.22	d : 0.22	] : 0.11	c : 0.11	= : 0.11	
d : 0.33	c : 0.22	r : 0.22	b : 0.11	= : 0.11	
d : 0.33	c : 0.22	r : 0.22	] : 0.11	= : 0.11	
b : 0.22	d : 0.22	c : 0.11	3 : 0.11	= : 0.11	4 : 0.11	] : 0.11	
3 : 0.22	b : 0.22	d : 0.22	= : 0.11	4 : 0.11	i : 0.11	
3 : 0.33	] : 0.22	d : 0.11	= : 0.11	4 : 0.11	i : 0.11	
3 : 0.22	d : 0.22	c : 0.11	g : 0.11	= : 0.11	4 : 0.11	i : 0.11	
b : 0.22	c : 0.22	g : 0.11	d : 0.11	= : 0.11	3 : 0.11	i : 0.11	
b : 0.22	c : 0.22	g : 0.11	d : 0.11	= : 0.11	e : 0.11	i : 0.11	
a : 0.11	] : 0.11	E : 0.11	g : 0.11	d : 0.11	= : 0.11	c : 0.11	e : 0.11	i : 0.11	

#score	98.63033854991114
#seq	9
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_UTR_m2_run2.txt

#BEAR
ddffffff!!cccooooooccc4444ffff	chr19:7978484-7978738(+)$1	254	98	128	9.7696
ddd!!eeeee[ccclllccc]eeeeedddd	chr7:100171574-100171826(-)$1	252	49	79	10.1914
e####ddddaddddmmmmdddd]a]dddd5	chr8:145650611-145650879(-)$1	268	159	189	9.7730
ccc!!eeeee[ccclllccc]eeeeeccc3	chr8:66630269-66630540(-)$1	271	149	179	10.6501
cc[dddd"""ddddmmmmdddd333ddddc	chrX:48830135-48830385(-)$1	250	198	228	12.0144
bb[ggggggg[ddddllldddd]ggggggg	chr19:54970697-54970936(+)$1	239	185	215	9.0723
cc[bb[bb"""cccmmmmccc333bb]bb]	chr19:1009920-1010227(-)$1	307	135	165	12.0620
cc[dddd"""ddddmmmmdddd333ddddc	chrX:48830076-48830335(-)$1	259	148	178	12.0144
eeeea[ccc!!cccmmmmccc22ccc333a	chr5:176923579-176923823(-)$1	244	94	124	12.7251
cgggggggbbddddmmmmdddd]bb333gg	chr10:70525593-70525890(+)$1	297	185	215	9.6416
fffa[eeeee[ccclllccc]eeeee]a]f	chr11:61643830-61644066(-)$1	236	75	105	9.9003
e"""dddd[bb!!ammmma22bbddddeee	chr15:89858467-89858720(+)$1	253	47	77	9.2100
F::dddd####cccmmmmccc22ddddbb!	chrX:153667093-153667305(+)$1	212	51	81	9.8931
$$$$eeeee[cccnnnnnccc]eeeee333	chr16:725958-726252(+)$1	294	92	122	9.5671
ccggggggg!!ddddllldddd]ggggggg	chr9:136208739-136209013(-)$1	274	220	250	9.7420
"""ccc[ccc[cccmmmmccc]ccc]ccc3	chr1:36180966-36181228(-)$1	262	85	115	12.3873
[eeeee[a!!cccnnnnnccc4444a]eee	chr3:128205802-128206058(-)$1	256	135	165	10.6247
gccc[eeeee[ccclllccc22eeeee]cc	chr12:110788055-110788317(+)$1	262	99	129	10.6164
"""dddd####cccmmmmcccddddeeeee	chr4:994549-994811(+)$1	262	9	39	12.7051
ee!!a[dddd[cccmmmmccc]dddda]ee	chr20:32263624-32263915(-)$1	291	255	285	12.0584
dd!!eeeee!!cccmmmmccc4444eeeee	chr17:38189720-38189973(-)$1	253	196	226	14.4118
!bb[eeeee[eeeeemmmmeeeee]eeeee	chr11:18034093-18034427(-)$1	334	36	66	8.4196
!!ffffff"""cccmmmmcccffffff]a]	chr12:133287579-133287900(+)$1	321	43	73	11.9409
ee[aeeeee[cccnnnnnccc22eeeee]a	chr1:36790221-36790481(+)$1	260	106	136	10.4362
ggggggg!!a[cccnnnnnccc]a]ggggg	chr16:89760411-89760712(+)$1	301	80	110	10.3492
e$$$$$ccc!!cccmmmmccc22ccc]eee	chr12:133295487-133295731(+)$1	244	124	154	12.0690
fffff[bb!!ddddmmmmdddd333bb]ff	chr5:78622077-78622328(+)$1	251	106	136	10.1058
dd!!eeeee!!cccmmmmccc4444eeeee	chr17:38189694-38189911(-)$1	217	134	164	14.4118
eeeeedddd!!cccooooooccc22ddddC	chr19:1879461-1879742(-)$1	281	62	92	8.5105
cc[eeeee####cccnnnnnccc22eeeee	chr1:203277651-203277928(+)$1	277	3	33	9.0056
ddd[ccc[ccc[bbmmmmbbccc22ccc22	chr16:28847498-28847748(+)$1	250	167	197	9.6893
ccc[eeeee!!cccmmmmccc]eeeeeccc	chr19:1882200-1882449(-)$1	249	140	170	13.4587
fffff!!bb!!cccmmmmccc]bb22ffff	chr19:1878701-1878984(-)$1	283	139	169	10.9439
!ffffff####cccmmmmccc333ffffff	chr19:972870-973132(+)$1	262	101	131	12.9464
cccdddd!!cccbbmmmmbb]ccc]dddd2	chr8:71314118-71314442(-)$1	324	135	165	10.5875
[bbeeeee[a!!bbmmmmbb22a]eeeee]	chr2:64068081-64068414(+)$1	333	128	158	11.3303
bbb[ffffff[cccmmmmcccffffffbb]	chr11:67810671-67810971(+)$1	300	126	156	10.1686
eeeee!!bb!!cccmmmmccc22bb333ee	chr18:8609577-8609960(+)$1	383	107	137	12.0480
==========[cccmmmmccc]========	chr10:75578180-75578512(-)$1	332	229	259	13.1400
"dddd[ddddddddmmmmdddd]dddd]dd	chr2:26618283-26618542(+)$1	259	206	236	9.7101
eee[dddd!!ddddmmmmdddd4444dddd	chr2:8869036-8869307(-)$1	271	72	102	11.2435
dddd[ffffffcccmmmmccc333ffffff	chr19:10464393-10464674(-)$1	281	169	199	11.6281
dddddddd!!cccnnnnnccc22dddd]dd	chr20:257241-257552(-)$1	311	1	31	9.6415
ggggggg!!cccbbmmmmbb333ccc4444	chr9:131583298-131583566(-)$1	268	178	208	11.5952
cc[hhhhhhhhcccmmmmccc333hhhhhh	chr17:17716149-17716424(-)$1	275	159	189	10.7314
ggg!!eeeee!!bbmmmmbb333eeeeegg	chr16:89758116-89758368(+)$1	252	141	171	12.0772
ddddgggggggcccmmmmcccgggggggll	chr5:137274596-137274855(-)$1	259	160	190	10.7612
"""dddd[ccc[bbmmmmbb]cccdddd]e	chr19:1104365-1104610(+)$1	245	134	164	10.1136
cc[dddd!!bbcccmmmmccc]bb22dddd	chr1:158580623-158580847(-)$1	224	25	55	11.2996
a[a[bb[gggggggmmmmggggggg]bb]a	chr16:1821023-1821340(-)$1	317	106	136	9.1907
ddd[ffffffddddmmmmdddd]ffffff]	chr1:52825790-52826170(-)$1	380	225	255	9.5915
:::eeeee"""cccmmmmccc333eeeee:	chr12:109124821-109125107(-)$1	286	82	112	10.9023
ffeeeee[bb!!bbmmmmbb22bb]eeeee	chr19:40738365-40738645(-)$1	280	101	131	10.1603
bb[eeeee####cccammmma]ccceeeee	chr17:77081839-77082122(+)$1	283	194	224	9.2293
ddd[bbeeeee!!ammmma22eeeee]bb2	chr8:145650724-145651011(-)$1	287	124	154	8.7390
cc[ggggggg[cccmmmmcccgggggggcc	chr19:10407290-10407528(+)$1	238	170	200	12.5509

#otherMatches

#Seq PSSM
GGGUGUGUUUCCUUUUUGUGGGUGUUGCAU	chr19:7978484-7978738(+)$1	254	98	128	9.7696
GGCCUGGGCCUGGGCACCCUUGGCCUGCCG	chr7:100171574-100171826(-)$1	252	49	79	10.1914
AUGAGCUGUGGAUGCGGCCAUCACAACAGA	chr8:145650611-145650879(-)$1	268	159	189	9.7730
UGGUAGGUAAGCUGUAACAGAUUGCUCCAG	chr8:66630269-66630540(-)$1	271	149	179	10.6501
UGUGUGUAAAGGCUAUGCAGCCAAAAUACC	chrX:48830135-48830385(-)$1	250	198	228	12.0144
GGAGACUCAUUCUGGAAUCUAGUGUGGGUC	chr19:54970697-54970936(+)$1	239	185	215	9.0723
GAGGGGUCUUGGUAGGUCUGCAGUGAACCG	chr19:1009920-1010227(-)$1	307	135	165	12.0620
UGUGUGUAAAGGCUAUGCAGCCAAAAUACC	chrX:48830076-48830335(-)$1	259	148	178	12.0144
GCUGCUCCUGUCUUUCCAAAGUGAGGUCCG	chr5:176923579-176923823(-)$1	244	94	124	12.7251
GUCUUUGAGUGUCCUAUUGGACUACAGAUU	chr10:70525593-70525890(+)$1	297	185	215	9.6416
AGCCUCCACUCAGGGUGCCUAAGUGGUGAG	chr11:61643830-61644066(-)$1	236	75	105	9.9003
GAACCUGAUGCAGCACAUGAAGCUCAGCAC	chr15:89858467-89858720(+)$1	253	47	77	9.2100
CUGAGUCGAUGGGCCGAGGCCGAGACUGGA	chrX:153667093-153667305(+)$1	212	51	81	9.8931
agggagggcgggCAGCUGGCUGGUCUUGGA	chr16:725958-726252(+)$1	294	92	122	9.5671
ACAGCUGUUGGUGGUUGGGCCAGGGCGGCU	chr9:136208739-136209013(-)$1	274	220	250	9.7420
AUUGCAGGUAGGCAUGAGUGUGUAUGUGCU	chr1:36180966-36181228(-)$1	262	85	115	12.3873
GCAGGGCCGUUGCCGUCUGCACCCAGACCC	chr3:128205802-128206058(-)$1	256	135	165	10.6247
CGUGCAUGUGCGUUUUUAGCAACACAUCUA	chr12:110788055-110788317(+)$1	262	99	129	10.6164
CUCUGAGUCCUUGGAUGUCCAUUCAGGGCU	chr4:994549-994811(+)$1	262	9	39	12.7051
GCAGGAGGGGUGGUGAAGGCCUCCCCCAGC	chr20:32263624-32263915(-)$1	291	255	285	12.0584
AGUUCAGGGCCAGGUGCUCCUUCUCUCCUG	chr17:38189720-38189973(-)$1	253	196	226	14.4118
GCCGGGCUCUGGGUUGAAGGAUCCUGGGCU	chr11:18034093-18034427(-)$1	334	36	66	8.4196
gccccggUGUCUGGGACCCCAACUGGGACA	chr12:133287579-133287900(+)$1	321	43	73	11.9409
ACUCCUGGGUGUCUUUGUGACUGUUUAGUG	chr1:36790221-36790481(+)$1	260	106	136	10.4362
CCACAGGCUCUCGGGGAGGCUGUGUCCUGU	chr16:89760411-89760712(+)$1	301	80	110	10.3492
gcaaucagccacuucuuuaaggagcucCAG	chr12:133295487-133295731(+)$1	244	124	154	12.0690
UGCAUGUUCUAUGGGUAGCUAUCAAAGGGU	chr5:78622077-78622328(+)$1	251	106	136	10.1058
AGUUCAGGGCCAGGUGCUCCUUCUCUCCUG	chr17:38189694-38189911(-)$1	217	134	164	14.4118
GGAACCCCUGGCCUGAGGAUGGGAAGGGGC	chr19:1879461-1879742(-)$1	281	62	92	8.5105
UCUGGAGGAAAACUGGCUAUCAGAACCUCC	chr1:203277651-203277928(+)$1	277	3	33	9.0056
CCACAGUCGCCGCCGCCAGGGGCUUGCUCC	chr16:28847498-28847748(+)$1	250	167	197	9.6893
GGCGCCUGUGCACGCUCACGUAGCGGGGCC	chr19:1882200-1882449(-)$1	249	140	170	13.4587
GAUGUGUCCUGUUCGUUUGAGUGGUGACAU	chr19:1878701-1878984(-)$1	283	139	169	10.9439
CUGGGGCAGAGGGUGCAUGCUGGGGUCCCA	chr19:972870-973132(+)$1	262	101	131	12.9464
GGAGACGCUGAGAGCCAGCUACUCUUGUCC	chr8:71314118-71314442(-)$1	324	135	165	10.5875
GCUGGGCUGCGACCGUUAGGGAGGGGCUCA	chr2:64068081-64068414(+)$1	333	128	158	11.3303
AGGAGGUUGGAGCAGCCCUGCCCAGCCCCG	chr11:67810671-67810971(+)$1	300	126	156	10.1686
gcggcggcgggcggcgggccgagcgggagc	chr18:8609577-8609960(+)$1	383	107	137	12.0480
GCAGCCUUUUGCUCCUGUGAGGAAAGGGUU	chr10:75578180-75578512(-)$1	332	229	259	13.1400
UACAAAGAGAGUAUGCCGAUGCAUUUCAUU	chr2:26618283-26618542(+)$1	259	206	236	9.7101
AGUGCUUAUUUGCAAAAUUGUAUAAUUAGG	chr2:8869036-8869307(-)$1	271	72	102	11.2435
CCAGCAGCUCCCUCAAGUGAGAAUGGGGUU	chr19:10464393-10464674(-)$1	281	169	199	11.6281
CCUGGGGGCCAGACCUCUUCUUCCUCCACA	chr20:257241-257552(-)$1	311	1	31	9.6415
CAGCAGGGAGAAGCGGGGGCAGAUUCAGGG	chr9:131583298-131583566(-)$1	268	178	208	11.5952
CAGGUACAGGCGGCUGGUGCCGUGGCUUGU	chr17:17716149-17716424(-)$1	275	159	189	10.7314
UCCUGGAGAAUAUGCCAACACCCUUCUCGG	chr16:89758116-89758368(+)$1	252	141	171	12.0772
GUUACAGAAUGGUGACUUCAUUUGUGCUAA	chr5:137274596-137274855(-)$1	259	160	190	10.7612
GAGGGCCACGGCGGGGCGUCUCCGGGCCGA	chr19:1104365-1104610(+)$1	245	134	164	10.1136
UGUAUGCAACUAGUCACUGCUGAGGGGUGU	chr1:158580623-158580847(-)$1	224	25	55	11.2996
AGCGGGGACCUGGGGACGCCUAGGUGCCGG	chr16:1821023-1821340(-)$1	317	106	136	9.1907
AGAUGGCUGGCUGGGUUUCUGGACCAGUUC	chr1:52825790-52826170(-)$1	380	225	255	9.5915
UUAGGGCCGGGGGCUGCUGUCGGGGGCUCG	chr12:109124821-109125107(-)$1	286	82	112	10.9023
GAGGGGUGCUGACCUAGUGGGAGGAGCCCC	chr19:40738365-40738645(-)$1	280	101	131	10.1603
UGCUGGCCCCUCUGCCCCAGGUGCAGGCCG	chr17:77081839-77082122(+)$1	283	194	224	9.2293
GGCAGAGGCGCAGCUCCUGGGGUGUCAUCC	chr8:145650724-145651011(-)$1	287	124	154	8.7390
GUCUCCGCUUCUGUUUCUGCAAGGUGGAAC	chr19:10407290-10407528(+)$1	238	170	200	12.5509

#DB
))((((((..(((......)))....))))	chr19:7978484-7978738(+)$1	1	98	128	9.7696
(((..(((((.(((...))).)))))))))	chr7:100171574-100171826(-)$1	1	49	79	10.1914
(....(((((((((....)))).).)))).	chr8:145650611-145650879(-)$1	1	159	189	9.7730
(((..(((((.(((...))).)))))))).	chr8:66630269-66630540(-)$1	1	149	179	10.6501
((.((((...((((....))))...)))))	chrX:48830135-48830385(-)$1	1	198	228	12.0144
((.(((((((.((((...)))).)))))))	chr19:54970697-54970936(+)$1	1	185	215	9.0723
((.((.((...(((....)))...)).)).	chr19:1009920-1010227(-)$1	1	135	165	12.0620
((.((((...((((....))))...)))))	chrX:48830076-48830335(-)$1	1	148	178	12.0144
(((((.(((..(((....)))..)))...)	chr5:176923579-176923823(-)$1	1	94	124	12.7251
)(((((((((((((....)))).))...))	chr10:70525593-70525890(+)$1	1	185	215	9.6416
((((.(((((.(((...))).))))).).)	chr11:61643830-61644066(-)$1	1	75	105	9.9003
(...((((.((..(....)..)))))))))	chr15:89858467-89858720(+)$1	1	47	77	9.2100
(..((((....(((....)))..))))((.	chrX:153667093-153667305(+)$1	1	51	81	9.8931
....(((((.(((.....))).)))))...	chr16:725958-726252(+)$1	1	92	122	9.5671
))(((((((..((((...)))).)))))))	chr9:136208739-136209013(-)$1	1	220	250	9.7420
...(((.(((.(((....))).))).))).	chr1:36180966-36181228(-)$1	1	85	115	12.3873
.(((((.(..(((.....)))....).)))	chr3:128205802-128206058(-)$1	1	135	165	10.6247
)(((.(((((.(((...)))..))))).))	chr12:110788055-110788317(+)$1	1	99	129	10.6164
...((((....(((....))))))))))))	chr4:994549-994811(+)$1	1	9	39	12.7051
((..(.((((.(((....))).))))).))	chr20:32263624-32263915(-)$1	1	255	285	12.0584
((..(((((..(((....)))....)))))	chr17:38189720-38189973(-)$1	1	196	226	14.4118
.((.(((((.(((((....))))).)))))	chr11:18034093-18034427(-)$1	1	36	66	8.4196
..((((((...(((....))))))))).).	chr12:133287579-133287900(+)$1	1	43	73	11.9409
((.((((((.(((.....)))..))))).)	chr1:36790221-36790481(+)$1	1	106	136	10.4362
(((((((..(.(((.....))).).)))))	chr16:89760411-89760712(+)$1	1	80	110	10.3492
(.....(((..(((....)))..))).)))	chr12:133295487-133295731(+)$1	1	124	154	12.0690
(((((.((..((((....))))...)).))	chr5:78622077-78622328(+)$1	1	106	136	10.1058
((..(((((..(((....)))....)))))	chr17:38189694-38189911(-)$1	1	134	164	14.4118
)))))((((..(((......)))..)))))	chr19:1879461-1879742(-)$1	1	62	92	8.5105
((.(((((....(((.....)))..)))))	chr1:203277651-203277928(+)$1	1	3	33	9.0056
(((.(((.(((.((....)))))..)))..	chr16:28847498-28847748(+)$1	1	167	197	9.6893
(((.(((((..(((....))).))))))))	chr19:1882200-1882449(-)$1	1	140	170	13.4587
(((((..((..(((....))).))..))))	chr19:1878701-1878984(-)$1	1	139	169	10.9439
.((((((....(((....)))...))))))	chr19:972870-973132(+)$1	1	101	131	12.9464
(((((((..(((((....)).))).)))).	chr8:71314118-71314442(-)$1	1	135	165	10.5875
.(((((((.(..((....))..).))))).	chr2:64068081-64068414(+)$1	1	128	158	11.3303
(((.((((((.(((....))))))))))).	chr11:67810671-67810971(+)$1	1	126	156	10.1686
(((((..((..(((....)))..))...))	chr18:8609577-8609960(+)$1	1	107	137	12.0480
((((((((((.(((....))).))))))))	chr10:75578180-75578512(-)$1	1	229	259	13.1400
.((((.((((((((....)))).)))).))	chr2:26618283-26618542(+)$1	1	206	236	9.7101
(((.((((..((((....))))....))))	chr2:8869036-8869307(-)$1	1	72	102	11.2435
((((.(((((((((....)))...))))))	chr19:10464393-10464674(-)$1	1	169	199	11.6281
((((((((..(((.....)))..)))).))	chr20:257241-257552(-)$1	1	1	31	9.6415
(((((((..(((((....))...)))....	chr9:131583298-131583566(-)$1	1	178	208	11.5952
((.(((((((((((....)))...))))))	chr17:17716149-17716424(-)$1	1	159	189	10.7314
(((..(((((..((....))...)))))))	chr16:89758116-89758368(+)$1	1	141	171	12.0772
)))))))))))(((....)))(((((((..	chr5:137274596-137274855(-)$1	1	160	190	10.7612
...((((.(((.((....)).))))))).)	chr19:1104365-1104610(+)$1	1	134	164	10.1136
((.((((..(((((....))).))..))))	chr1:158580623-158580847(-)$1	1	25	55	11.2996
(.(.((.(((((((....))))))).)).)	chr16:1821023-1821340(-)$1	1	106	136	9.1907
(((.((((((((((....)))).)))))).	chr1:52825790-52826170(-)$1	1	225	255	9.5915
...(((((...(((....)))...))))).	chr12:109124821-109125107(-)$1	1	82	112	10.9023
))(((((.((..((....))..)).)))))	chr19:40738365-40738645(-)$1	1	101	131	10.1603
((.(((((....((((....).))))))))	chr17:77081839-77082122(+)$1	1	194	224	9.2293
(((.(((((((..(....)..))))).)).	chr8:145650724-145651011(-)$1	1	124	154	8.7390
((.(((((((.(((....))))))))))))	chr19:10407290-10407528(+)$1	1	170	200	12.5509

#PSSM
c : 0.21	d : 0.17	e : 0.16	f : 0.07	" : 0.07	g : 0.07	b : 0.05	! : 0.05	[ : 0.03	F : 0.01	$ : 0.01	= : 0.01	a : 0.01	: : 0.01	
c : 0.21	d : 0.19	e : 0.12	b : 0.08	f : 0.08	g : 0.07	" : 0.07	: : 0.03	$ : 0.03	# : 0.01	! : 0.01	= : 0.01	[ : 0.01	
[ : 0.17	d : 0.14	f : 0.10	e : 0.10	g : 0.08	c : 0.07	" : 0.07	! : 0.05	b : 0.05	: : 0.03	$ : 0.03	# : 0.01	= : 0.01	a : 0.01	
d : 0.19	e : 0.16	[ : 0.14	! : 0.10	g : 0.10	f : 0.08	a : 0.03	$ : 0.03	c : 0.03	# : 0.01	b : 0.01	" : 0.01	= : 0.01	h : 0.01	
e : 0.24	d : 0.19	f : 0.12	g : 0.12	! : 0.05	b : 0.05	[ : 0.05	a : 0.03	c : 0.03	# : 0.01	$ : 0.01	= : 0.01	h : 0.01	
e : 0.30	d : 0.21	g : 0.12	f : 0.10	[ : 0.08	c : 0.03	! : 0.03	b : 0.03	$ : 0.01	= : 0.01	h : 0.01	
e : 0.30	d : 0.24	g : 0.12	f : 0.10	c : 0.05	[ : 0.05	b : 0.03	! : 0.03	= : 0.01	h : 0.01	
e : 0.28	d : 0.12	g : 0.10	f : 0.08	b : 0.07	! : 0.07	c : 0.05	# : 0.05	[ : 0.05	" : 0.03	a : 0.01	= : 0.01	h : 0.01	
e : 0.21	! : 0.16	" : 0.08	g : 0.08	c : 0.08	# : 0.08	d : 0.07	b : 0.07	f : 0.05	[ : 0.03	= : 0.01	h : 0.01	
! : 0.24	e : 0.10	" : 0.08	# : 0.08	c : 0.08	g : 0.07	b : 0.07	a : 0.05	[ : 0.05	f : 0.05	d : 0.03	= : 0.01	h : 0.01	
! : 0.21	[ : 0.19	c : 0.16	d : 0.14	# : 0.08	" : 0.05	b : 0.03	e : 0.03	g : 0.03	f : 0.01	h : 0.01	
c : 0.62	d : 0.17	! : 0.08	# : 0.03	[ : 0.03	e : 0.01	g : 0.01	
c : 0.62	d : 0.17	b : 0.12	! : 0.03	e : 0.01	g : 0.01	
c : 0.53	d : 0.17	b : 0.12	n : 0.07	a : 0.03	o : 0.01	e : 0.01	g : 0.01	
m : 0.71	n : 0.08	l : 0.07	o : 0.03	d : 0.03	c : 0.03	e : 0.01	
m : 0.73	l : 0.10	n : 0.10	o : 0.03	a : 0.01	
m : 0.75	l : 0.10	n : 0.10	o : 0.03	
m : 0.75	n : 0.10	c : 0.07	o : 0.03	l : 0.03	
c : 0.53	d : 0.17	b : 0.12	o : 0.03	a : 0.03	m : 0.03	n : 0.03	g : 0.01	
c : 0.57	d : 0.17	b : 0.12	2 : 0.03	e : 0.01	o : 0.01	n : 0.01	g : 0.01	m : 0.01	
c : 0.55	d : 0.17	] : 0.08	2 : 0.08	3 : 0.03	e : 0.01	g : 0.01	a : 0.01	
d : 0.19	2 : 0.16	] : 0.14	c : 0.12	3 : 0.12	e : 0.08	4 : 0.05	g : 0.05	f : 0.03	b : 0.01	
3 : 0.17	e : 0.14	] : 0.12	c : 0.12	2 : 0.10	4 : 0.08	b : 0.07	g : 0.05	d : 0.03	f : 0.03	a : 0.01	= : 0.01	
e : 0.17	3 : 0.14	c : 0.12	d : 0.10	4 : 0.08	g : 0.08	b : 0.08	f : 0.05	2 : 0.05	a : 0.03	] : 0.01	= : 0.01	
e : 0.19	d : 0.12	4 : 0.08	] : 0.08	g : 0.08	c : 0.08	f : 0.08	2 : 0.08	3 : 0.05	b : 0.05	= : 0.01	h : 0.01	
e : 0.32	d : 0.19	g : 0.08	f : 0.08	c : 0.07	4 : 0.03	b : 0.03	3 : 0.03	] : 0.03	2 : 0.03	a : 0.01	= : 0.01	h : 0.01	
e : 0.24	d : 0.23	f : 0.12	g : 0.08	] : 0.08	c : 0.05	3 : 0.05	b : 0.03	a : 0.01	= : 0.01	4 : 0.01	h : 0.01	
e : 0.24	d : 0.16	] : 0.10	f : 0.08	g : 0.08	b : 0.08	c : 0.07	3 : 0.07	a : 0.01	= : 0.01	4 : 0.01	h : 0.01	
e : 0.24	d : 0.17	f : 0.10	c : 0.08	g : 0.08	b : 0.07	] : 0.07	3 : 0.03	a : 0.01	2 : 0.01	= : 0.01	4 : 0.01	h : 0.01	l : 0.01	
e : 0.23	f : 0.10	d : 0.08	c : 0.08	g : 0.08	] : 0.08	3 : 0.05	a : 0.05	2 : 0.05	5 : 0.01	! : 0.01	C : 0.01	= : 0.01	4 : 0.01	h : 0.01	l : 0.01	: : 0.01	

#score	607.7593216171109
#seq	56
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_UTR_m2_run2.txt

#BEAR
ee[bb[cccooooooccc]bbeee	chr12:110783081-110783337(+)$1	256	205	229	7.4852
ddccc"""cccmmmmccc333ccc	chr12:111894883-111895141(-)$1	258	107	131	7.0754
dddd[bb[bbnnnnnbb]bb]ddd	chr3:122101865-122102179(-)$1	314	106	130	9.4575
ccc[ffffffnnnnnffffff333	chr3:50099071-50099311(+)$1	240	166	190	10.1645
:ccca[ddddnnnnndddd]a]cc	chr16:448994-449247(+)$1	253	117	141	10.9021
$$ccceeeeennnnneeeee]ccc	chr11:61068154-61068415(-)$1	261	125	149	10.9237
d[a"""ddddnnnnndddd]addd	chr2:139259556-139259831(+)$1	275	106	130	11.5532
f!!eeeee[annnnna]eeeee]f	chr3:17226451-17226748(-)$1	297	51	75	11.0650
eeeee####ccclllccc22eeee	chr3:52443427-52443730(-)$1	303	260	284	7.4338
ee"""a[cccooooooccca]eee	chr6:83666898-83667157(-)$1	259	3	27	8.6272
e####eeeeennnnneeeee4444	chr12:7031464-7031702(+)$1	238	189	213	11.1735
!eeeee!!ccclllccc22eeeee	chr17:80213150-80213432(-)$1	282	213	237	7.8066
HH:ccc[cccnnnnnccc]ccca[	chr2:242440746-242441014(-)$1	268	9	33	9.9190
cdddd[ddddnnnnndddddddd6	chr16:56970606-56970868(+)$1	262	15	39	10.4661
==ccceeeeennnnneeeee22cc	chr5:140048549-140048799(+)$1	250	141	165	11.1303
iiiiieeeeennnnneeeeeeeee	chr2:85571211-85571491(-)$1	280	127	151	11.3873
f"""ffffffnnnnnffffff444	chr1:31424939-31425186(-)$1	247	47	71	9.8957
e]eeeeecccnnnnncccgggggg	chr19:5667357-5667607(+)$1	250	165	189	11.6962
:iiiiiiiiinnnnniiiiiiiii	chr3:171329931-171330197(-)$1	266	140	164	10.5197
HHdddd[cccnnnnnccc333ddd	chr6:111628410-111628716(-)$1	306	261	285	11.2448
:::ddddcccnnnnnccc]dddd=	chr16:30764564-30764841(+)$1	277	188	212	9.3047
ffff!!ddddnnnnndddd22fff	chr10:122610912-122611206(+)$1	294	163	187	10.5963
ddddddddddnnnnndddd]dddd	chr11:46867623-46867873(-)$1	250	166	190	10.9410
[eeeee[cccnnnnnccc]eeeee	chr17:18150252-18150527(-)$1	275	26	50	12.7007
:ccc[eeeeennnnneeeee]ccc	chr9:90255638-90255896(+)$1	258	19	43	10.7376
eeee[eeeeennnnneeeee]eee	chr14:24584832-24585098(+)$1	266	25	49	11.7160
eee[a[ddddnnnnnddddaeeee	chr16:2166375-2166641(-)$1	266	187	211	11.7622
[bb!!bbcccnnnnnccc]bb22b	chr8:99057450-99057675(-)$1	225	59	83	10.2047
[ddddeeeeennnnneeeee22dd	chr17:29654724-29654977(+)$1	253	161	185	11.0162
==========nnnnn=========	chr14:35579592-35579864(-)$1	272	20	44	11.7416
fffffeeeeennnnneeeee]fff	chr17:76124606-76124849(-)$1	243	199	223	10.2400
d$$$$$ddddnnnnnddddddddg	chr12:120659277-120659559(-)$1	282	230	254	10.0604
eeccc"""bbnnnnnbb333ccc]	chr16:22337459-22337725(+)$1	266	105	129	11.0708
b[dddd[cccooooooccc]dddd	chr1:156263646-156263932(-)$1	286	61	85	7.8752
cc!!ffffffnnnnnffffff22c	chr5:110847886-110848213(-)$1	327	215	239	9.8938
ddddccc[bbnnnnnbb]ccc]dd	chr5:168006106-168006361(-)$1	255	185	209	10.2614
eeee!!ddddnnnnndddd]eeee	chr20:32957109-32957444(+)$1	335	140	164	12.0408
eee[bb[cccnnnnnccc22bbee	chr17:43171061-43171320(+)$1	259	144	168	11.1785
b[eeeeeccclllccc4444eeee	chr14:24710753-24711030(-)$1	277	115	139	7.5072
:dddd[a!!annnnna22a]dddd	chr9:117027283-117027527(+)$1	244	10	34	10.1193
eee####cccnnnnnccc333eee	chr17:3494272-3494520(-)$1	248	17	41	12.9576
:::ccc[cccnnnnnccc]ccccc	chr3:149093322-149093583(-)$1	261	173	197	9.7557
[ccc!!ddddnnnnndddd22ccc	chr20:48744360-48744622(-)$1	262	128	152	11.5652
%eeeee!!ccclllccc22eeeee	chr22:39134039-39134292(-)$1	253	17	41	7.2157
eee[ffffffnnnnnffffff]ee	chr3:184081238-184081494(+)$1	256	22	46	10.4255
gggggbbcccnnnnnccc]bb22g	chr22:24226107-24226351(+)$1	244	205	229	10.6153
!aeeeee[cccmmmmccc]eeeee	chr16:23505478-23505731(-)$1	253	153	177	7.0735
ddd!!eeeeennnnneeeee22dd	chr17:27074172-27074398(+)$1	226	157	181	11.2742
ddccc[ddddnnnnndddd]ccc2	chr13:20633563-20633844(+)$1	281	207	231	11.1659
eeee!!cccooooooccc]eeeee	chr5:135468523-135468826(+)$1	303	140	164	8.9218
:iiiiiiiiinnnnniiiiiiiii	chr19:8467331-8467612(+)$1	281	228	252	10.5197
[eeeee[cccnnnnnccc]eeeee	chr9:96060227-96060541(+)$1	314	197	221	12.7007
dddd!!bb[annnnna]bb333dd	chr14:104194141-104194395(+)$1	254	6	30	10.5662
:::ccc[cccnnnnnccccccggg	chr19:45404422-45404738(+)$1	316	109	133	9.5059
g[ccc[a[bbnnnnnbb]acccgg	chr22:19341385-19341639(-)$1	254	179	203	10.6317
bb[eeeeebbnnnnnbb]eeeeeb	chr3:47882535-47882826(+)$1	291	5	29	10.0685
:dddd!!cccnnnnncccdddd::	chr3:9495424-9495680(+)$1	256	156	180	9.2343
ggggggddddnnnnndddd]gggg	chr16:75600684-75600938(+)$1	254	48	72	11.2299

#otherMatches

#Seq PSSM
CUUCCCUUCCCAAAAGAAAGGAGA	chr12:110783081-110783337(+)$1	256	205	229	7.4852
CACCCAGUCCUGUUCAGGUAAGGG	chr12:111894883-111895141(-)$1	258	107	131	7.0754
AUAUGGCGGCGCCCAGUGGCGGUG	chr3:122101865-122102179(-)$1	314	106	130	9.4575
GUCCCUGGAGUGGGUUUUUAGAUU	chr3:50099071-50099311(+)$1	240	166	190	10.1645
AAGAUGCUGCAGGUAGUGGGACUC	chr16:448994-449247(+)$1	253	117	141	10.9021
AAACCUACAGGUGAGCUGUGUGGU	chr11:61068154-61068415(-)$1	261	125	149	10.9237
CUGACCGCUGCCGCCCAGCACGUC	chr2:139259556-139259831(+)$1	275	106	130	11.5532
GAAGAAUUAGAAGCCCAAAUUUCC	chr3:17226451-17226748(-)$1	297	51	75	11.0650
GUUGUAAAAUCUCACAGAAAGCAG	chr3:52443427-52443730(-)$1	303	260	284	7.4338
GGAAAGUGACAUCAGCGUCCACCC	chr6:83666898-83667157(-)$1	259	3	27	8.6272
UAACAGUCCAUUUCCUGGAUAACA	chr12:7031464-7031702(+)$1	238	189	213	11.1735
GCCAUUAAUUCACAGAGGAAAUGG	chr17:80213150-80213432(-)$1	282	213	237	7.8066
UCAUCGACCUGGAGGAGGCCGAGG	chr2:242440746-242441014(-)$1	268	9	33	9.9190
UGCUGGUUCUAAUCGGGGACAGUA	chr16:56970606-56970868(+)$1	262	15	39	10.4661
AGUGAAGGUACCAUCUACCUCUUC	chr5:140048549-140048799(+)$1	250	141	165	11.1303
CAGGUGGGGCUGCACGUCCCGGGU	chr2:85571211-85571491(-)$1	280	127	151	11.3873
CUGCCUACCAACUCAUGGUGGAUG	chr1:31424939-31425186(-)$1	247	47	71	9.8957
GCGCCUUCUCUCCUUGGGGGAGCA	chr19:5667357-5667607(+)$1	250	165	189	11.6962
AAAGUGUGUCUCUCUGAUGCAUUU	chr3:171329931-171330197(-)$1	266	140	164	10.5197
AUGAAGAGUCUAAAUGAUAAACUU	chr6:111628410-111628716(-)$1	306	261	285	11.2448
UCCAUGCCAACAACAUUGUGCAUC	chr16:30764564-30764841(+)$1	277	188	212	9.3047
GGGGAAGGACAAGAGGUUUCACCC	chr10:122610912-122611206(+)$1	294	163	187	10.5963
GGAGCCCCUGAAUCCUGGGCGGCU	chr11:46867623-46867873(-)$1	250	166	190	10.9410
GCCCAUGUCGCUGGCCGAgguggg	chr17:18150252-18150527(-)$1	275	26	50	12.7007
AACCUUAGUAUUUGCUGCUAUGGU	chr9:90255638-90255896(+)$1	258	19	43	10.7376
GGCUUGCCCCGAAGAGGGGCUGGC	chr14:24584832-24585098(+)$1	266	25	49	11.7160
GUCUCGCCAAAAAACUUGGGGGCC	chr16:2166375-2166641(-)$1	266	187	211	11.7622
UCCCGCUCCUAAGGCAGGAAGAUG	chr8:99057450-99057675(-)$1	225	59	83	10.2047
GAUUUGGGGUUUGUUGCUUUUAAA	chr17:29654724-29654977(+)$1	253	161	185	11.0162
UAUUUUCAGCUGCCUGCUGAAGAU	chr14:35579592-35579864(-)$1	272	20	44	11.7416
CUGCUUCUCCUAUGCGGGGACAGC	chr17:76124606-76124849(-)$1	243	199	223	10.2400
GUGUUUGGGUGCCUUGCCCCUGAG	chr12:120659277-120659559(-)$1	282	230	254	10.0604
UGCUGGCCGCCGGUUGCAAGCAGA	chr16:22337459-22337725(+)$1	266	105	129	11.0708
GACUGCCCCUCAAUGCAGGAGCAG	chr1:156263646-156263932(-)$1	286	61	85	7.8752
GUCUUCUGGACCUGCUCCAGACCA	chr5:110847886-110848213(-)$1	327	215	239	9.8938
AAGCCCGUCGCUCCUCGCCGGCGC	chr5:168006106-168006361(-)$1	255	185	209	10.2614
AAGUGACUCAAACUGUGAGAACUU	chr20:32957109-32957444(+)$1	335	140	164	12.0408
AGGAGCCACUUUCACAGUAAGCCC	chr17:43171061-43171320(+)$1	259	144	168	11.1785
CAGAGGCUCCUGUGGAUUUGGCCU	chr14:24710753-24711030(-)$1	277	115	139	7.5072
UGCUCCGUGCUUUGUGAUCUGAGC	chr9:117027283-117027527(+)$1	244	10	34	10.1193
CCUCACAGACAACGAGUUCAAAGG	chr17:3494272-3494520(-)$1	248	17	41	12.9576
UGUGGCUCACUUCCUGUGUGUCUG	chr3:149093322-149093583(-)$1	261	173	197	9.7557
GUGGAAUGGGCUUUCCCCACCCCA	chr20:48744360-48744622(-)$1	262	128	152	11.5652
UGCAGGGGUUUGACGAAGACCUGC	chr22:39134039-39134292(-)$1	253	17	41	7.2157
GCUCUCGUGGCCCCCUCGCGAUGG	chr3:184081238-184081494(+)$1	256	22	46	10.4255
GCCCUCAGAGACCACCUCAUGCCG	chr22:24226107-24226351(+)$1	244	205	229	10.6153
UAUAGAGAGCCGAGAGGCGCUUUG	chr16:23505478-23505731(-)$1	253	153	177	7.0735
UGGAGGCCGGAGCUGCUGGCAGCC	chr17:27074172-27074398(+)$1	226	157	181	11.2742
uugacccuugaacaacaagaguuu	chr13:20633563-20633844(+)$1	281	207	231	11.1659
CCCCGGCGCGCGCGGGCGAGGGGA	chr5:135468523-135468826(+)$1	303	140	164	8.9218
cggggcaggauggauuuuugcucu	chr19:8467331-8467612(+)$1	281	228	252	10.5197
GCAGGUGUGACACCCUCGGACCUG	chr9:96060227-96060541(+)$1	314	197	221	12.7007
GCGCAUGUGCUUUGUGGACCCCGU	chr14:104194141-104194395(+)$1	254	6	30	10.5662
AGCUGGACCUGCCCAAGGCCAACC	chr19:45404422-45404738(+)$1	316	109	133	9.5059
GUCAGUGCACGCACAGUCCCUGCC	chr22:19341385-19341639(-)$1	254	179	203	10.6317
CUAUCCCGCUCUUUAGGCCGGGAA	chr3:47882535-47882826(+)$1	291	5	29	10.0685
UGACCAAUGAUUGUUUCAGGUCUG	chr3:9495424-9495680(+)$1	256	156	180	9.2343
GUUUGUUUCUCCCACAGAACACAG	chr16:75600684-75600938(+)$1	254	48	72	11.2299

#DB
((.((.(((......))).)))))	chr12:110783081-110783337(+)$1	1	205	229	7.4852
(((((...(((....)))...)))	chr12:111894883-111895141(-)$1	1	107	131	7.0754
((((.((.((.....)).)).)))	chr3:122101865-122102179(-)$1	1	106	130	9.4575
(((.((((((.....))))))...	chr3:50099071-50099311(+)$1	1	166	190	10.1645
.((((.((((.....)))).).))	chr16:448994-449247(+)$1	1	117	141	10.9021
..((((((((.....))))).)))	chr11:61068154-61068415(-)$1	1	125	149	10.9237
(.(...((((.....)))).))))	chr2:139259556-139259831(+)$1	1	106	130	11.5532
(..(((((.(.....).))))).)	chr3:17226451-17226748(-)$1	1	51	75	11.0650
(((((....(((...)))..))))	chr3:52443427-52443730(-)$1	1	260	284	7.4338
((...(.(((......)))).)))	chr6:83666898-83667157(-)$1	1	3	27	8.6272
(....(((((.....)))))....	chr12:7031464-7031702(+)$1	1	189	213	11.1735
.(((((..(((...)))..)))))	chr17:80213150-80213432(-)$1	1	213	237	7.8066
((.(((.(((.....))).)))(.	chr2:242440746-242441014(-)$1	1	9	33	9.9190
(((((.((((.....)))))))).	chr16:56970606-56970868(+)$1	1	15	39	10.4661
((((((((((.....)))))..))	chr5:140048549-140048799(+)$1	1	141	165	11.1303
)))))(((((.....)))))((((	chr2:85571211-85571491(-)$1	1	127	151	11.3873
(...((((((.....))))))...	chr1:31424939-31425186(-)$1	1	47	71	9.8957
).)))))(((.....)))((((((	chr19:5667357-5667607(+)$1	1	165	189	11.6962
.(((((((((.....)))))))))	chr3:171329931-171330197(-)$1	1	140	164	10.5197
))((((.(((.....)))...)))	chr6:111628410-111628716(-)$1	1	261	285	11.2448
...(((((((.....))).))))(	chr16:30764564-30764841(+)$1	1	188	212	9.3047
((((..((((.....))))..)))	chr10:122610912-122611206(+)$1	1	163	187	10.5963
((((((((((.....)))).))))	chr11:46867623-46867873(-)$1	1	166	190	10.9410
.(((((.(((.....))).)))))	chr17:18150252-18150527(-)$1	1	26	50	12.7007
.(((.(((((.....))))).)))	chr9:90255638-90255896(+)$1	1	19	43	10.7376
((((.(((((.....))))).)))	chr14:24584832-24585098(+)$1	1	25	49	11.7160
(((.(.((((.....)))))))))	chr16:2166375-2166641(-)$1	1	187	211	11.7622
.((..(((((.....))).))..)	chr8:99057450-99057675(-)$1	1	59	83	10.2047
.(((((((((.....)))))..))	chr17:29654724-29654977(+)$1	1	161	185	11.0162
((((((((((.....)))))))))	chr14:35579592-35579864(-)$1	1	20	44	11.7416
((((((((((.....))))).)))	chr17:76124606-76124849(-)$1	1	199	223	10.2400
(.....((((.....))))))))(	chr12:120659277-120659559(-)$1	1	230	254	10.0604
(((((...((.....))...))).	chr16:22337459-22337725(+)$1	1	105	129	11.0708
(.((((.(((......))).))))	chr1:156263646-156263932(-)$1	1	61	85	7.8752
((..((((((.....))))))..)	chr5:110847886-110848213(-)$1	1	215	239	9.8938
(((((((.((.....)).))).))	chr5:168006106-168006361(-)$1	1	185	209	10.2614
((((..((((.....)))).))))	chr20:32957109-32957444(+)$1	1	140	164	12.0408
(((.((.(((.....)))..))))	chr17:43171061-43171320(+)$1	1	144	168	11.1785
(.((((((((...)))....))))	chr14:24710753-24711030(-)$1	1	115	139	7.5072
.((((.(..(.....)..).))))	chr9:117027283-117027527(+)$1	1	10	34	10.1193
(((....(((.....)))...)))	chr17:3494272-3494520(-)$1	1	17	41	12.9576
...(((.(((.....))).)))((	chr3:149093322-149093583(-)$1	1	173	197	9.7557
.(((..((((.....))))..)))	chr20:48744360-48744622(-)$1	1	128	152	11.5652
.(((((..(((...)))..)))))	chr22:39134039-39134292(-)$1	1	17	41	7.2157
(((.((((((.....)))))).))	chr3:184081238-184081494(+)$1	1	22	46	10.4255
((((((((((.....))).))..)	chr22:24226107-24226351(+)$1	1	205	229	10.6153
.((((((.(((....))).)))))	chr16:23505478-23505731(-)$1	1	153	177	7.0735
(((..(((((.....)))))..))	chr17:27074172-27074398(+)$1	1	157	181	11.2742
(((((.((((.....)))).))).	chr13:20633563-20633844(+)$1	1	207	231	11.1659
((((..(((......))).)))))	chr5:135468523-135468826(+)$1	1	140	164	8.9218
.(((((((((.....)))))))))	chr19:8467331-8467612(+)$1	1	228	252	10.5197
.(((((.(((.....))).)))))	chr9:96060227-96060541(+)$1	1	197	221	12.7007
((((..((.(.....).))...))	chr14:104194141-104194395(+)$1	1	6	30	10.5662
...(((.(((.....))))))(((	chr19:45404422-45404738(+)$1	1	109	133	9.5059
(.(((.(.((.....)).))))))	chr22:19341385-19341639(-)$1	1	179	203	10.6317
((.(((((((.....)).))))))	chr3:47882535-47882826(+)$1	1	5	29	10.0685
.((((..(((.....)))))))..	chr3:9495424-9495680(+)$1	1	156	180	9.2343
((((((((((.....)))).))))	chr16:75600684-75600938(+)$1	1	48	72	11.2299

#PSSM
e : 0.22	d : 0.15	: : 0.15	[ : 0.08	f : 0.06	c : 0.05	b : 0.05	g : 0.05	! : 0.03	H : 0.03	= : 0.03	$ : 0.01	i : 0.01	% : 0.01	
e : 0.25	d : 0.18	c : 0.08	[ : 0.06	i : 0.05	: : 0.05	$ : 0.03	H : 0.03	= : 0.03	f : 0.03	b : 0.03	g : 0.03	! : 0.01	# : 0.01	" : 0.01	] : 0.01	a : 0.01	
e : 0.25	d : 0.18	c : 0.17	: : 0.06	i : 0.05	[ : 0.03	! : 0.03	" : 0.03	f : 0.03	g : 0.03	a : 0.01	# : 0.01	b : 0.01	= : 0.01	$ : 0.01	
e : 0.22	c : 0.20	d : 0.18	[ : 0.06	" : 0.05	i : 0.05	! : 0.05	# : 0.03	f : 0.03	g : 0.03	b : 0.01	= : 0.01	$ : 0.01	
c : 0.17	e : 0.17	d : 0.13	! : 0.12	f : 0.08	[ : 0.05	i : 0.05	b : 0.03	a : 0.03	" : 0.03	# : 0.03	g : 0.03	= : 0.01	$ : 0.01	
e : 0.31	[ : 0.12	! : 0.10	b : 0.06	f : 0.06	c : 0.06	d : 0.06	" : 0.05	# : 0.03	i : 0.03	a : 0.01	= : 0.01	$ : 0.01	g : 0.01	
e : 0.24	d : 0.20	[ : 0.15	b : 0.06	f : 0.06	c : 0.05	! : 0.05	" : 0.03	# : 0.03	i : 0.03	a : 0.03	= : 0.01	
c : 0.31	d : 0.18	e : 0.18	[ : 0.06	f : 0.06	! : 0.05	" : 0.03	i : 0.03	# : 0.01	= : 0.01	b : 0.01	
c : 0.37	d : 0.18	e : 0.15	b : 0.08	f : 0.06	[ : 0.03	i : 0.03	# : 0.01	= : 0.01	! : 0.01	
c : 0.36	d : 0.18	e : 0.15	b : 0.08	f : 0.06	a : 0.05	o : 0.03	i : 0.03	= : 0.01	
n : 0.82	c : 0.08	o : 0.06	l : 0.01	
n : 0.82	o : 0.06	l : 0.05	m : 0.03	c : 0.01	
n : 0.82	o : 0.06	l : 0.06	m : 0.03	
n : 0.82	o : 0.06	l : 0.05	m : 0.03	c : 0.01	
n : 0.82	o : 0.06	c : 0.05	m : 0.03	l : 0.01	
c : 0.36	d : 0.18	e : 0.15	b : 0.08	f : 0.06	a : 0.05	o : 0.03	i : 0.03	= : 0.01	
c : 0.37	d : 0.18	e : 0.15	b : 0.08	f : 0.06	] : 0.03	i : 0.03	= : 0.01	4 : 0.01	2 : 0.01	
c : 0.34	d : 0.18	e : 0.17	] : 0.06	f : 0.06	2 : 0.05	i : 0.03	= : 0.01	3 : 0.01	4 : 0.01	b : 0.01	
d : 0.20	e : 0.18	] : 0.17	3 : 0.06	f : 0.06	2 : 0.06	c : 0.06	b : 0.03	i : 0.03	a : 0.03	g : 0.01	= : 0.01	4 : 0.01	
e : 0.29	] : 0.13	3 : 0.08	c : 0.08	b : 0.06	f : 0.06	2 : 0.06	d : 0.06	a : 0.03	i : 0.03	g : 0.01	= : 0.01	4 : 0.01	
e : 0.22	c : 0.12	d : 0.12	] : 0.10	2 : 0.08	b : 0.06	3 : 0.06	f : 0.06	a : 0.03	g : 0.03	i : 0.03	4 : 0.01	= : 0.01	
e : 0.29	d : 0.17	c : 0.15	2 : 0.10	] : 0.05	g : 0.05	3 : 0.03	4 : 0.03	i : 0.03	f : 0.03	= : 0.01	b : 0.01	
e : 0.31	d : 0.22	c : 0.15	g : 0.06	2 : 0.05	4 : 0.03	i : 0.03	f : 0.03	3 : 0.01	] : 0.01	a : 0.01	= : 0.01	: : 0.01	
e : 0.29	d : 0.17	c : 0.13	g : 0.10	f : 0.05	4 : 0.03	i : 0.03	= : 0.03	b : 0.03	3 : 0.01	[ : 0.01	6 : 0.01	] : 0.01	2 : 0.01	: : 0.01	

#score	596.3251569050312
#seq	58
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF832JDM_UTP3_transcript_m1_run2.txt

#BEAR
]bb]ccc22ggggggg4444bb333ccc22ccc22dddd	chr1:45242078-45242297(+)$1	219	176	215	16.4757
gg[ccc[a[cccacccmmmmccc]a333ccc]a]ccc]g	chr12:7076411-7076641(-)$1	230	93	132	17.6243
eeeecccdddd[ddddllldddd]dddd]ccc333eeee	chr17:78935426-78935654(+)$1	228	63	102	13.3660
ddda"""bb[ccc[bbmmmmbb]cccbb4444a]dddd3	chr17:42993801-42994008(-)$1	207	31	70	18.3352
####bb[dddd"""bbmmmmbb333dddd]bb22bb333	chr10:108729735-108729962(+)$1	227	63	102	17.5768
ee[ccc[dddd!!ddddllldddd]dddd333ccc]eee	chr11:62620286-62620498(-)$1	212	144	183	14.0557
gg[ccc[a[cccacccmmmmccc]a333ccc]a]ccc]g	chr12:7076444-7076659(-)$1	215	111	150	17.6243
ddda"""bb[ccc[bbmmmmbb]cccbb4444a]dddd3	chr17:42993791-42994001(-)$1	210	24	63	18.3352
]bb]ccc22ggggggg4444bb333ccc22ccc22ccc]	chr1:45242097-45242307(+)$1	210	157	196	16.5942
bb[==========[bbmmmmbb]==========]bb]aH	chr1:109642770-109643014(+)$1	244	76	115	16.4796
"""ccc[eeeee[bbnnnnnbb22eeeee]ccc333ddd	chr12:6054295-6054503(-)$1	208	26	65	15.0281

#otherMatches

#Seq PSSM
ACUGACUGUUGCCUCCUCCCGGCCCAGGUUCCUCUCCCU	chr1:45242078-45242297(+)$1	219	176	215	16.4757
CACGGUAGGGCUGGGCACAAGCCACCUGAGCGCAACCUU	chr12:7076411-7076641(-)$1	230	93	132	17.6243
UGCAGGCGCUUUGGGAACUUUCCUGGGCUGCCAACUGCG	chr17:78935426-78935654(+)$1	228	63	102	13.3660
UCCCAUCUCUCCAGGCUGAUGUGUGGGAACUCGAGGAAA	chr17:42993801-42994008(-)$1	207	31	70	18.3352
gaacgcguccguucucgucugaucucggaagcuaagcac	chr10:108729735-108729962(+)$1	227	63	102	17.5768
AGUAAUCAUCACUUGUUGAAAACAUUGGUUUUAUUUUUU	chr11:62620286-62620498(-)$1	212	144	183	14.0557
CACGGUAGGGCUGGGCACAAGCCACCUGAGCGCAACCUU	chr12:7076444-7076659(-)$1	215	111	150	17.6243
UCCCAUCUCUCCAGGCUGAUGUGUGGGAACUCGAGGAAA	chr17:42993791-42994001(-)$1	210	24	63	18.3352
ACUGACUGUUGCCUCCUCCCGGCCCAGGUUCCUCUCCCU	chr1:45242097-45242307(+)$1	210	157	196	16.5942
GUGUUGUGUGCGGAGCUGUGGCGUCGCGUGUGAGGCGCG	chr1:109642770-109643014(+)$1	244	76	115	16.4796
ggacggagcugagcCGCGAUGGAAUUAGCCCCGCGGCGG	chr12:6054295-6054503(-)$1	208	26	65	15.0281

#DB
.)).)))..)))))))....))...)))..)))..))))	chr1:45242078-45242297(+)$1	1	176	215	16.4757
((.(((.(.(((((((....))).)...))).).))).)	chr12:7076411-7076641(-)$1	1	93	132	17.6243
(((((((((((.((((...)))).)))).)))...))))	chr17:78935426-78935654(+)$1	1	63	102	13.3660
((((...((.(((.((....)).)))))....).)))).	chr17:42993801-42994008(-)$1	1	31	70	18.3352
....((.((((...((....))...)))).))..))...	chr10:108729735-108729962(+)$1	1	63	102	17.5768
((.(((.((((..((((...)))).))))...))).)))	chr11:62620286-62620498(-)$1	1	144	183	14.0557
((.(((.(.(((((((....))).)...))).).))).)	chr12:7076444-7076659(-)$1	1	111	150	17.6243
((((...((.(((.((....)).)))))....).)))).	chr17:42993791-42994001(-)$1	1	24	63	18.3352
.)).)))..)))))))....))...)))..)))..))).	chr1:45242097-45242307(+)$1	1	157	196	16.5942
((.((((((((((.((....)).)))))))))).)).)(	chr1:109642770-109643014(+)$1	1	76	115	16.4796
...(((.(((((.((.....))..))))).)))...)))	chr12:6054295-6054503(-)$1	1	26	65	15.0281

#PSSM
] : 0.18	g : 0.18	e : 0.18	d : 0.18	# : 0.09	b : 0.09	" : 0.09	
b : 0.27	g : 0.18	e : 0.18	d : 0.18	# : 0.09	" : 0.09	
[ : 0.36	b : 0.18	d : 0.18	e : 0.09	# : 0.09	" : 0.09	
c : 0.36	] : 0.18	a : 0.18	e : 0.09	# : 0.09	= : 0.09	
c : 0.63	" : 0.18	b : 0.09	= : 0.09	
c : 0.63	" : 0.18	b : 0.09	= : 0.09	
[ : 0.45	c : 0.27	" : 0.18	= : 0.09	
d : 0.27	2 : 0.18	a : 0.18	b : 0.18	= : 0.09	e : 0.09	
d : 0.27	2 : 0.18	[ : 0.18	b : 0.18	= : 0.09	e : 0.09	
d : 0.27	g : 0.18	c : 0.18	[ : 0.18	= : 0.09	e : 0.09	
c : 0.36	d : 0.27	g : 0.18	= : 0.09	e : 0.09	
c : 0.36	g : 0.18	[ : 0.09	" : 0.09	! : 0.09	= : 0.09	e : 0.09	
g : 0.18	a : 0.18	c : 0.18	d : 0.09	" : 0.09	! : 0.09	= : 0.09	[ : 0.09	
[ : 0.27	g : 0.18	c : 0.18	d : 0.18	" : 0.09	b : 0.09	
b : 0.45	g : 0.18	c : 0.18	d : 0.18	
b : 0.36	g : 0.18	c : 0.18	d : 0.18	n : 0.09	
m : 0.54	4 : 0.18	l : 0.09	d : 0.09	n : 0.09	
m : 0.54	4 : 0.18	l : 0.18	n : 0.09	
m : 0.54	4 : 0.18	l : 0.18	n : 0.09	
m : 0.54	4 : 0.18	d : 0.09	l : 0.09	n : 0.09	
b : 0.63	c : 0.18	d : 0.18	
b : 0.63	c : 0.18	d : 0.18	
3 : 0.27	] : 0.27	c : 0.18	d : 0.18	2 : 0.09	
3 : 0.27	] : 0.27	c : 0.18	d : 0.09	= : 0.09	2 : 0.09	
3 : 0.27	a : 0.18	c : 0.18	d : 0.09	] : 0.09	= : 0.09	e : 0.09	
c : 0.36	d : 0.27	3 : 0.18	= : 0.09	e : 0.09	
d : 0.27	c : 0.18	3 : 0.18	b : 0.18	= : 0.09	e : 0.09	
d : 0.27	c : 0.18	3 : 0.18	b : 0.18	= : 0.09	e : 0.09	
2 : 0.18	c : 0.18	4 : 0.18	d : 0.18	] : 0.09	= : 0.09	e : 0.09	
c : 0.27	2 : 0.18	4 : 0.18	] : 0.18	3 : 0.09	= : 0.09	
c : 0.54	4 : 0.18	b : 0.09	3 : 0.09	= : 0.09	
c : 0.36	] : 0.18	4 : 0.18	b : 0.09	3 : 0.09	= : 0.09	
c : 0.36	a : 0.36	3 : 0.09	2 : 0.09	= : 0.09	
] : 0.45	2 : 0.27	3 : 0.18	c : 0.09	
c : 0.27	2 : 0.18	3 : 0.18	d : 0.18	b : 0.18	
d : 0.27	c : 0.27	b : 0.18	e : 0.09	] : 0.09	3 : 0.09	
d : 0.36	c : 0.27	e : 0.18	3 : 0.09	] : 0.09	
d : 0.36	] : 0.18	e : 0.18	3 : 0.09	c : 0.09	a : 0.09	
3 : 0.27	d : 0.18	g : 0.18	e : 0.18	] : 0.09	H : 0.09	

#score	181.4955500862183
#seq	11
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_transcript_m2_run2.txt

#BEAR
"ffffffqqqqqqqqffff	chr11:86659046-86659310(-)$1	264	12	31	13.4780
fffddddqqqqqqqqdddd	chr8:22278619-22278862(+)$1	243	151	170	14.1255
ccc[cccqqqqqqqqccc]	chr12:6645849-6646056(+)$1	207	184	203	14.2587
[ffffffqqqqqqqqffff	chr2:21228518-21228760(-)$1	242	10	29	13.4263
ff[ddddqqqqqqqqdddd	chr1:236140131-236140408(-)$1	277	33	52	14.2486
#ffffffqqqqqqqqffff	chr19:3984177-3984414(-)$1	237	143	162	13.4621
gggddddqqqqqqqqdddd	chr2:21229011-21229256(-)$1	245	167	186	14.4318
gggg[bbqqqqqqqqbbgg	chr21:46270896-46271149(-)$1	253	224	243	12.8611
####cccqqqqqqqqccc4	chr5:179157588-179157845(+)$1	257	163	182	14.1348
ee!!cccqqqqqqqqccc3	chr11:126133523-126133812(-)$1	289	6	25	14.1203
!dddd[aqqqqqqqqaddd	chr17:8378621-8378905(-)$1	284	131	150	14.0677
c"""cccqqqqqqqqccc]	chr16:84103395-84103697(-)$1	302	140	159	14.1835
fff"""aqqqqqqqqa333	chr7:97911584-97911838(+)$1	254	139	158	12.9696
!!bbcccqqqqqqqqccc]	chr19:15354121-15354399(-)$1	278	242	261	13.9073
=[eeeeeqqqqqqqqeeee	chr9:100777763-100778039(+)$1	276	232	251	14.9434
dddddddqqqqqqqqdddd	chr21:27253294-27253560(-)$1	266	115	134	14.0500
gggggggqqqqqqqqgggg	chrX:47088028-47088325(+)$1	297	84	103	14.0589
""eeeeeqqqqqqqqeeee	chr2:216226150-216226354(-)$1	204	67	86	15.0211
ccc[cccqqqqqqqqcccc	chr11:63743804-63744087(+)$1	283	110	129	14.1404
ddddcccqqqqqqqqccc]	chr14:75601105-75601346(-)$1	241	33	52	14.0438
&bb[cccqqqqqqqqccc]	chr6:138752276-138752551(-)$1	275	143	162	13.4777
gggddddqqqqqqqqdddd	chr2:21229056-21229262(-)$1	206	173	192	14.4318
gggggggqqqqqqqqgggg	chr8:22277166-22277377(+)$1	211	74	93	14.0589
dddddddqqqqqqqqdddd	chr12:56669690-56669938(-)$1	248	11	30	14.0500
bb:ddddqqqqqqqqdddd	chr10:102122251-102122509(+)$1	258	206	225	13.0639
bb[ddddqqqqqqqqdddd	chr19:36640645-36640958(+)$1	313	70	89	14.2193
d[eeeeeqqqqqqqqeeee	chr16:68156389-68156717(+)$1	328	283	302	14.8197
ddddcccqqqqqqqqccc:	chr16:30735366-30735634(+)$1	268	169	188	12.9923
gggddddqqqqqqqqdddd	chr2:21228960-21229190(-)$1	230	101	120	14.4318
eeeecccqqqqqqqqccc:	chr5:149781549-149781802(-)$1	253	27	46	13.2250
!ccccccqqqqqqqqccc]	chr17:73773590-73773845(-)$1	255	66	85	14.3614
:ccccccqqqqqqqqccc2	chr12:57106482-57106743(-)$1	261	224	243	13.2652
ddeeeeeqqqqqqqqeeee	chr4:1019480-1019806(+)$1	326	238	257	14.6175
###ddddqqqqqqqqdddd	chr1:36806923-36807183(-)$1	260	203	222	14.4327
::eeeeeqqqqqqqqeeee	chr10:101910736-101911006(-)$1	270	127	146	13.3905
d[eeeeeqqqqqqqqeeee	chr1:202910389-202910630(-)$1	241	130	149	14.8197
eeee[bbqqqqqqqqbb]e	chr6:145172998-145173243(+)$1	245	90	109	12.7539
c!!ddddqqqqqqqqdddd	chr19:36641023-36641288(+)$1	265	2	21	14.5330
gggggggqqqqqqqqgggg	chr15:64447974-64448230(-)$1	256	48	67	14.0589
::eeeeeqqqqqqqqeeee	chr20:628522-628773(-)$1	251	140	159	13.3905
bbeeeeeqqqqqqqqeeee	chr2:173369384-173369655(+)$1	271	134	153	14.5982
b!!ddddqqqqqqqqdddd	chr9:80944300-80944559(+)$1	259	170	189	14.4359
dd[ddddqqqqqqqqdddd	chr17:26966243-26966537(-)$1	294	8	27	14.2386
iiiiiiiqqqqqqqqiiii	chr2:21231141-21231383(-)$1	242	43	62	13.8237
hhhhcccqqqqqqqqcccf	chr5:175936084-175936357(+)$1	273	94	113	13.3148
"ffffffqqqqqqqqffff	chr2:96851641-96851892(-)$1	251	64	83	13.4780
++eeeeeqqqqqqqqeeee	chr2:21224578-21224785(-)$1	207	129	148	13.9416
G:eeeeeqqqqqqqqeeee	chr11:75283341-75283608(+)$1	267	98	117	13.7030
::eeeeeqqqqqqqqeeee	chr2:188329706-188329997(-)$1	291	23	42	13.3905
bb[ddddqqqqqqqqdddd	chr5:71515750-71516010(-)$1	260	231	250	14.2193
ddeeeeeqqqqqqqqeeee	chr20:61536499-61536785(-)$1	286	76	95	14.6175
bb[ddddqqqqqqqqdddd	chr3:195776489-195776764(-)$1	275	42	61	14.2193
++eeeeeqqqqqqqqeeee	chr2:21224566-21224778(-)$1	212	122	141	13.9416
!!eeeeeqqqqqqqqeeee	chr22:29190977-29191230(-)$1	253	121	140	15.1121
!!eeeeeqqqqqqqqeeee	chr16:57417260-57417559(+)$1	299	196	215	15.1121
::eeeeeqqqqqqqqeeee	chr10:102123308-102123556(+)$1	248	0	19	13.3905
FFeeeeeqqqqqqqqeeee	chrX:20173431-20173694(-)$1	263	5	24	14.1883
ggggg[aqqqqqqqqaggg	chr1:169101722-169101966(+)$1	244	184	203	13.9436
!ffffffqqqqqqqqffff	chr19:3976081-3976309(-)$1	228	73	92	13.5082
fffddddqqqqqqqqdddd	chr2:216225980-216226184(-)$1	204	40	59	14.1255
::eeeeeqqqqqqqqeeee	chr20:30754141-30754367(+)$1	226	63	82	13.3905
gggggggqqqqqqqqgggg	chr19:7116315-7116583(-)$1	268	41	60	14.0589
!ffffffqqqqqqqqffff	chr12:9231756-9231966(-)$1	210	22	41	13.5082
gggggggqqqqqqqqgggg	chr8:22277200-22277434(+)$1	234	40	59	14.0589
ddd[cccqqqqqqqqccc2	chr3:186793483-186793720(+)$1	237	86	105	13.7728
#ffffffqqqqqqqqffff	chr17:15961122-15961432(-)$1	310	256	275	13.4621
d[eeeeeqqqqqqqqeeee	chr1:202910322-202910566(-)$1	244	66	85	14.8197
f:eeeeeqqqqqqqqeeee	chr2:21225511-21225736(-)$1	225	62	81	13.9372
ee!!cccqqqqqqqqccc3	chr19:50000746-50000952(+)$1	206	67	86	14.1203
=======qqqqqqqq====	chrX:131526069-131526333(-)$1	264	165	184	14.0527
:dddd[aqqqqqqqqa]dd	chr2:21230744-21230995(-)$1	251	80	99	13.0429

#otherMatches

#Seq PSSM
CUGGAAUUCCCAUCUGUUU	chr11:86659046-86659310(-)$1	264	12	31	13.4780
AAAACUGUCCGCUCUCAGU	chr8:22278619-22278862(+)$1	243	151	170	14.1255
ACCUUGUGUCCCUCAAUAU	chr12:6645849-6646056(+)$1	207	184	203	14.2587
UCCUUAGAAGGACACCUAA	chr2:21228518-21228760(-)$1	242	10	29	13.4263
UGAUGUGCCUUAAAUUAUA	chr1:236140131-236140408(-)$1	277	33	52	14.2486
CGUGGACCAUGGCAAGUCC	chr19:3984177-3984414(-)$1	237	143	162	13.4621
GCUGGAGAAGCCACACUCC	chr2:21229011-21229256(-)$1	245	167	186	14.4318
CAAUUGUAUUAAAUAGCAU	chr21:46270896-46271149(-)$1	253	224	243	12.8611
CUCUUAAAAAGACACUUAU	chr5:179157588-179157845(+)$1	257	163	182	14.1348
GCUCUUGCCCAAUACCAAA	chr11:126133523-126133812(-)$1	289	6	25	14.1203
CGUGGUCGUCACUCAGUCG	chr17:8378621-8378905(-)$1	284	131	150	14.0677
UCUCUGGGAUCAGUACCAC	chr16:84103395-84103697(-)$1	302	140	159	14.1835
UGCCAACUCUAUCGUGGUC	chr7:97911584-97911838(+)$1	254	139	158	12.9696
CCCCCCAAGUGCUGCUGGA	chr19:15354121-15354399(-)$1	278	242	261	13.9073
UGAGUCAACCGUCUGUGGC	chr9:100777763-100778039(+)$1	276	232	251	14.9434
GUACAGAUUGCUGCUUCUG	chr21:27253294-27253560(-)$1	266	115	134	14.0500
UCUGCUUUCCCCCACAGGC	chrX:47088028-47088325(+)$1	297	84	103	14.0589
CCGAGAGUAAAUCAUCUUU	chr2:216226150-216226354(-)$1	204	67	86	15.0211
GCAAUCAUGACCUCUUGAU	chr11:63743804-63744087(+)$1	283	110	129	14.1404
AUAAUGCCAAAGUCAGCAU	chr14:75601105-75601346(-)$1	241	33	52	14.0438
CUCUUGACCCCAAAUUCAU	chr6:138752276-138752551(-)$1	275	143	162	13.4777
GCUGGAGAAGCCACACUCC	chr2:21229056-21229262(-)$1	206	173	192	14.4318
GUCGGGCCCUGGGCUGCCC	chr8:22277166-22277377(+)$1	211	74	93	14.0589
CAAAGAUCUACCGAAAUCU	chr12:56669690-56669938(-)$1	248	11	30	14.0500
GCAGUGUCUCCACCUACAC	chr10:102122251-102122509(+)$1	258	206	225	13.0639
GGCUGCAGCUGACUAUGUA	chr19:36640645-36640958(+)$1	313	70	89	14.2193
CACCUGGUCACUCCCCCAG	chr16:68156389-68156717(+)$1	328	283	302	14.8197
UCUGGCUCCUUCUCCAGCU	chr16:30735366-30735634(+)$1	268	169	188	12.9923
GCUGGAGAAGCCACACUCC	chr2:21228960-21229190(-)$1	230	101	120	14.4318
UGCCAGCCCCACACAGCUA	chr5:149781549-149781802(-)$1	253	27	46	13.2250
ACCGAAGUUCUUUUUCUUG	chr17:73773590-73773845(-)$1	255	66	85	14.3614
GAGUGACUUUAUUUUGUCU	chr12:57106482-57106743(-)$1	261	224	243	13.2652
gccuggacacacacuucca	chr4:1019480-1019806(+)$1	326	238	257	14.6175
CCACAGUCCAAAUAAGCUG	chr1:36806923-36807183(-)$1	260	203	222	14.4327
AAGGCCCAAGUCCUAGGGC	chr10:101910736-101911006(-)$1	270	127	146	13.3905
GCAUGGUCAAACUUAGCCA	chr1:202910389-202910630(-)$1	241	130	149	14.8197
ACAGCAGACCUUUACCUAU	chr6:145172998-145173243(+)$1	245	90	109	12.7539
CCUGUGCCAAGCCUAGCAC	chr19:36641023-36641288(+)$1	265	2	21	14.5330
GCCCUGUAGUCCGCCACAG	chr15:64447974-64448230(-)$1	256	48	67	14.0589
UCUAGCUGCAAACAAAGCU	chr20:628522-628773(-)$1	251	140	159	13.3905
UGUGUGAAUACCUGCUCAC	chr2:173369384-173369655(+)$1	271	134	153	14.5982
GAGUGCCAGGCGAAGGGCA	chr9:80944300-80944559(+)$1	259	170	189	14.4359
UGAGUUUGUGAAAUAAAAC	chr17:26966243-26966537(-)$1	294	8	27	14.2386
AUUAGAAGUUCUCAAUUUU	chr2:21231141-21231383(-)$1	242	43	62	13.8237
AAACAGUUCUGCUUUACUG	chr5:175936084-175936357(+)$1	273	94	113	13.3148
UGAAUUUGUACAAAGAAAU	chr2:96851641-96851892(-)$1	251	64	83	13.4780
AGUCAUGAACCCCUACAUG	chr2:21224578-21224785(-)$1	207	129	148	13.9416
GCCAGGUACCUUCUCACCU	chr11:75283341-75283608(+)$1	267	98	117	13.7030
cagguauaaaccacaaugc	chr2:188329706-188329997(-)$1	291	23	42	13.3905
UGAGGAGAAAGCUAGCUCU	chr5:71515750-71516010(-)$1	260	231	250	14.2193
UAGGGGAUUUUUUUUUUUC	chr20:61536499-61536785(-)$1	286	76	95	14.6175
GAAUGUGUCACUACUCACA	chr3:195776489-195776764(-)$1	275	42	61	14.2193
AGUCAUGAACCCCUACAUG	chr2:21224566-21224778(-)$1	212	122	141	13.9416
UAGCAGAGAAGCCUGUCUG	chr22:29190977-29191230(-)$1	253	121	140	15.1121
GACAUGUCUUUUCUUGCAU	chr16:57417260-57417559(+)$1	299	196	215	15.1121
CACAGGUCAUCAGAUGCCU	chr10:102123308-102123556(+)$1	248	0	19	13.3905
GUGUGACUAUCCAUUGUCA	chrX:20173431-20173694(-)$1	263	5	24	14.1883
GAUCUUGUAUUCAGUCAGG	chr1:169101722-169101966(+)$1	244	184	203	13.9436
AUUUUAACAAACGCAUUAA	chr19:3976081-3976309(-)$1	228	73	92	13.5082
UUCAGCUCAACUCACAGCU	chr2:216225980-216226184(-)$1	204	40	59	14.1255
CCCUGCCCAACUUCAGGCA	chr20:30754141-30754367(+)$1	226	63	82	13.3905
UGAAGGAUUUUUUUUUUCU	chr19:7116315-7116583(-)$1	268	41	60	14.0589
UUAAUCUUCCUUUCCAGGU	chr12:9231756-9231966(-)$1	210	22	41	13.5082
GUCGGGCCCUGGGCUGCCC	chr8:22277200-22277434(+)$1	234	40	59	14.0589
CUUCCGGACCAUUCACUGC	chr3:186793483-186793720(+)$1	237	86	105	13.7728
CAUGGGGAAAGCAGAUUUC	chr17:15961122-15961432(-)$1	310	256	275	13.4621
GCAUGGUCAAACUUAGCCA	chr1:202910322-202910566(-)$1	244	66	85	14.8197
AACCUGGGAUAUACACUAG	chr2:21225511-21225736(-)$1	225	62	81	13.9372
UCACUGGUAAUGUGUCCAU	chr19:50000746-50000952(+)$1	206	67	86	14.1203
AUUUGUGAACAUAUAUAUA	chrX:131526069-131526333(-)$1	264	165	184	14.0527
AUGAAUCACAAAUUAGUUU	chr2:21230744-21230995(-)$1	251	80	99	13.0429

#DB
.((((((........))))	chr11:86659046-86659310(-)$1	1	12	31	13.4780
)))((((........))))	chr8:22278619-22278862(+)$1	1	151	170	14.1255
(((.(((........))).	chr12:6645849-6646056(+)$1	1	184	203	14.2587
.((((((........))))	chr2:21228518-21228760(-)$1	1	10	29	13.4263
((.((((........))))	chr1:236140131-236140408(-)$1	1	33	52	14.2486
.((((((........))))	chr19:3984177-3984414(-)$1	1	143	162	13.4621
)))((((........))))	chr2:21229011-21229256(-)$1	1	167	186	14.4318
((((.((........))))	chr21:46270896-46271149(-)$1	1	224	243	12.8611
....(((........))).	chr5:179157588-179157845(+)$1	1	163	182	14.1348
((..(((........))).	chr11:126133523-126133812(-)$1	1	6	25	14.1203
.((((.(........))))	chr17:8378621-8378905(-)$1	1	131	150	14.0677
(...(((........))).	chr16:84103395-84103697(-)$1	1	140	159	14.1835
(((...(........)...	chr7:97911584-97911838(+)$1	1	139	158	12.9696
..(((((........))).	chr19:15354121-15354399(-)$1	1	242	261	13.9073
(.(((((........))))	chr9:100777763-100778039(+)$1	1	232	251	14.9434
(((((((........))))	chr21:27253294-27253560(-)$1	1	115	134	14.0500
(((((((........))))	chrX:47088028-47088325(+)$1	1	84	103	14.0589
..(((((........))))	chr2:216226150-216226354(-)$1	1	67	86	15.0211
(((.(((........))))	chr11:63743804-63744087(+)$1	1	110	129	14.1404
(((((((........))).	chr14:75601105-75601346(-)$1	1	33	52	14.0438
.((.(((........))).	chr6:138752276-138752551(-)$1	1	143	162	13.4777
)))((((........))))	chr2:21229056-21229262(-)$1	1	173	192	14.4318
(((((((........))))	chr8:22277166-22277377(+)$1	1	74	93	14.0589
)))((((........))))	chr12:56669690-56669938(-)$1	1	11	30	14.0500
)).((((........))))	chr10:102122251-102122509(+)$1	1	206	225	13.0639
((.((((........))))	chr19:36640645-36640958(+)$1	1	70	89	14.2193
(.(((((........))))	chr16:68156389-68156717(+)$1	1	283	302	14.8197
))))(((........))).	chr16:30735366-30735634(+)$1	1	169	188	12.9923
)))((((........))))	chr2:21228960-21229190(-)$1	1	101	120	14.4318
))))(((........))).	chr5:149781549-149781802(-)$1	1	27	46	13.2250
.((((((........))).	chr17:73773590-73773845(-)$1	1	66	85	14.3614
.((((((........))).	chr12:57106482-57106743(-)$1	1	224	243	13.2652
))(((((........))))	chr4:1019480-1019806(+)$1	1	238	257	14.6175
...((((........))))	chr1:36806923-36807183(-)$1	1	203	222	14.4327
..(((((........))))	chr10:101910736-101911006(-)$1	1	127	146	13.3905
(.(((((........))))	chr1:202910389-202910630(-)$1	1	130	149	14.8197
((((.((........)).)	chr6:145172998-145173243(+)$1	1	90	109	12.7539
(..((((........))))	chr19:36641023-36641288(+)$1	1	2	21	14.5330
(((((((........))))	chr15:64447974-64448230(-)$1	1	48	67	14.0589
..(((((........))))	chr20:628522-628773(-)$1	1	140	159	13.3905
(((((((........))))	chr2:173369384-173369655(+)$1	1	134	153	14.5982
(..((((........))))	chr9:80944300-80944559(+)$1	1	170	189	14.4359
((.((((........))))	chr17:26966243-26966537(-)$1	1	8	27	14.2386
(((((((........))))	chr2:21231141-21231383(-)$1	1	43	62	13.8237
))))(((........)))(	chr5:175936084-175936357(+)$1	1	94	113	13.3148
.((((((........))))	chr2:96851641-96851892(-)$1	1	64	83	13.4780
..(((((........))))	chr2:21224578-21224785(-)$1	1	129	148	13.9416
(.(((((........))))	chr11:75283341-75283608(+)$1	1	98	117	13.7030
..(((((........))))	chr2:188329706-188329997(-)$1	1	23	42	13.3905
((.((((........))))	chr5:71515750-71516010(-)$1	1	231	250	14.2193
(((((((........))))	chr20:61536499-61536785(-)$1	1	76	95	14.6175
((.((((........))))	chr3:195776489-195776764(-)$1	1	42	61	14.2193
..(((((........))))	chr2:21224566-21224778(-)$1	1	122	141	13.9416
..(((((........))))	chr22:29190977-29191230(-)$1	1	121	140	15.1121
..(((((........))))	chr16:57417260-57417559(+)$1	1	196	215	15.1121
..(((((........))))	chr10:102123308-102123556(+)$1	1	0	19	13.3905
(((((((........))))	chrX:20173431-20173694(-)$1	1	5	24	14.1883
(((((.(........))))	chr1:169101722-169101966(+)$1	1	184	203	13.9436
.((((((........))))	chr19:3976081-3976309(-)$1	1	73	92	13.5082
)))((((........))))	chr2:216225980-216226184(-)$1	1	40	59	14.1255
..(((((........))))	chr20:30754141-30754367(+)$1	1	63	82	13.3905
(((((((........))))	chr19:7116315-7116583(-)$1	1	41	60	14.0589
.((((((........))))	chr12:9231756-9231966(-)$1	1	22	41	13.5082
(((((((........))))	chr8:22277200-22277434(+)$1	1	40	59	14.0589
(((.(((........))).	chr3:186793483-186793720(+)$1	1	86	105	13.7728
.((((((........))))	chr17:15961122-15961432(-)$1	1	256	275	13.4621
(.(((((........))))	chr1:202910322-202910566(-)$1	1	66	85	14.8197
).(((((........))))	chr2:21225511-21225736(-)$1	1	62	81	13.9372
((..(((........))).	chr19:50000746-50000952(+)$1	1	67	86	14.1203
(((((((........))))	chrX:131526069-131526333(-)$1	1	165	184	14.0527
.((((.(........).))	chr2:21230744-21230995(-)$1	1	80	99	13.0429

#PSSM
d : 0.15	g : 0.14	! : 0.09	: : 0.09	b : 0.08	f : 0.07	c : 0.05	# : 0.05	e : 0.05	" : 0.04	= : 0.02	+ : 0.02	[ : 0.01	& : 0.01	i : 0.01	h : 0.01	G : 0.01	F : 0.01	
f : 0.15	g : 0.14	d : 0.14	: : 0.09	b : 0.08	! : 0.07	c : 0.05	e : 0.05	[ : 0.05	# : 0.02	" : 0.02	+ : 0.02	i : 0.01	h : 0.01	F : 0.01	= : 0.01	
e : 0.30	f : 0.14	g : 0.14	d : 0.09	[ : 0.07	c : 0.05	! : 0.05	# : 0.02	b : 0.02	" : 0.01	: : 0.01	i : 0.01	h : 0.01	= : 0.01	
e : 0.30	d : 0.28	f : 0.09	g : 0.09	[ : 0.05	! : 0.02	" : 0.02	c : 0.02	# : 0.01	b : 0.01	i : 0.01	h : 0.01	= : 0.01	
e : 0.28	d : 0.25	c : 0.21	f : 0.09	g : 0.08	[ : 0.02	" : 0.01	i : 0.01	= : 0.01	
e : 0.28	d : 0.22	c : 0.21	f : 0.09	g : 0.07	[ : 0.04	b : 0.02	" : 0.01	i : 0.01	= : 0.01	
e : 0.28	d : 0.22	c : 0.21	f : 0.09	g : 0.07	a : 0.05	b : 0.02	i : 0.01	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.28	d : 0.22	c : 0.21	f : 0.09	g : 0.07	a : 0.05	b : 0.02	i : 0.01	= : 0.01	
e : 0.28	d : 0.23	c : 0.21	f : 0.09	g : 0.08	b : 0.02	3 : 0.01	i : 0.01	= : 0.01	] : 0.01	
e : 0.28	d : 0.25	c : 0.21	f : 0.09	g : 0.09	3 : 0.01	] : 0.01	i : 0.01	= : 0.01	
e : 0.29	d : 0.25	f : 0.11	g : 0.09	] : 0.08	3 : 0.04	: : 0.02	2 : 0.02	4 : 0.01	c : 0.01	i : 0.01	= : 0.01	

#score	991.8562553761636
#seq	71
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_CDS_m3_run1.txt

#BEAR
cc[ggggggg"""bbnnnnnbbggggggg22ccc	chr5:36241566-36241824(-)$1	258	204	238	13.7684
ddd[bb[bb[eeeeennnnneeeee]bbbbdddd	chr11:63580938-63581266(+)$1	328	211	245	12.8604
dd"""bbccc!!eeeeellleeeee]ccc]bbdd	chr11:61584019-61584276(-)$1	257	156	190	10.2193
dd[dddd!!ccc[bbnnnnnbb22ccc]dddd]d	chr11:64014040-64014328(-)$1	288	171	205	12.7026
cc"""ggggggg[bbnnnnnbbggggggg]cccb	chrX:105970000-105970290(+)$1	290	197	231	14.2716
ggg[a"""bb[ddddnnnnndddd]bb4444a]g	chr17:4851456-4851673(-)$1	217	149	183	14.3003
[bb[iiiiiiiii[annnnna]iiiiiiiii22b	chr15:81281902-81282174(-)$1	272	58	92	13.9908
f!!dddd!!ffffffnnnnnffffff22dddd]f	chr21:18885347-18885591(+)$1	244	113	147	12.4355
[bb!!dddd!!cccooooooccc22dddd]bb33	chr1:1342448-1342757(-)$1	309	150	184	10.7248
hh"""ccc"""ddddooooooddddccc4444hh	chr16:30899087-30899398(-)$1	311	219	253	11.9703
ddd[ccc$$$$$cccnnnnnccc22ccc]dddd]	chr16:30904431-30904712(-)$1	281	108	142	13.4760
ddd!!ccc"""eeeeellleeeee333cccdddd	chr20:3026617-3026851(+)$1	234	2	36	11.2636
fffff[bb[accc[annnnna]ccc]a]bb]fff	chr12:58145234-58145527(-)$1	293	232	266	13.4941
[ccc[a[bb[eeeeennnnneeeeebb]a]ccc=	chr4:22517197-22517505(-)$1	308	153	187	14.2597
[ccc[bb!!dddd[annnnna]dddd22bb]ccc	chr11:47587032-47587328(+)$1	296	259	293	13.8248
22ddddccc[eeeeennnnneeeee22ccccccl	chr7:30068182-30068488(+)$1	306	223	257	12.8314
cccceeeee!!ddddnnnnndddd4444eeeee]	chr6:43738787-43739027(+)$1	240	21	55	13.9723
bccc[dddd!!ddddnnnnndddd22dddd]ccc	chr7:56173955-56174190(-)$1	235	123	157	14.2098
$$eeeee"""eeeeennnnneeeee]eeeee333	chr11:47431540-47431818(+)$1	278	51	85	13.9646
dd"""ggggggg[cccooooooccc]ggggggg2	chr6:26104081-26104357(+)$1	276	75	109	10.6978
==========eeeeennnnneeeee333======	chr11:116707770-116707973(-)$1	203	45	79	15.9319
ffffa[bb!!eeeeennnnneeeee22bb]a333	chr16:57484850-57485125(+)$1	275	119	153	14.2868
##ggggggg!!ddddnnnnndddd]ggggggg>>	chr3:186288500-186288797(+)$1	297	228	262	14.2828
ee!!cccbbccccccooooooccc]ccc]bb]cc	chr10:119134496-119134809(-)$1	313	162	196	11.1680
eeeeeccc!!ddddoooooodddd22ccc333ee	chr4:2263578-2263921(-)$1	343	264	298	11.4589
eee]bbddddeeeeennnnneeeee]ddddccc!	chr3:184429397-184429644(-)$1	247	56	90	12.3141
[ccc[a[bb"""cccnnnnnccc4444bba]ccc	chr12:113796394-113796733(+)$1	339	155	189	14.6430
[ggggggg[aeeeeennnnneeeee]a]gggggg	chr9:139137317-139137568(-)$1	251	102	136	15.0412
dd!!ccc[gggggggoooooogggggggccc22d	chr4:37687807-37688082(-)$1	275	38	72	11.4291
a"""a!!dddd[cccnnnnnccc]dddd22a333	chr20:57617649-57617988(-)$1	339	8	42	14.0472
ffff[ccc[bb[cccoooooocccbbccc]ffff	chr20:61427739-61428047(+)$1	308	36	70	10.2039
ggggggccc[eeeeennnnneeeee22ccc]ggg	chr20:48807404-48807671(+)$1	267	150	184	14.9548
dd[ffffff!!ddddnnnnndddd22ffffff]d	chr17:76164647-76164897(+)$1	250	142	176	13.5831
dd!!a[bb[ccc[bbnnnnnbbccc]bb]a22dd	chr17:1587695-1587961(-)$1	266	150	184	13.4220
[bb[eeeeebb[cccnnnnncccbb]eeeeebbf	chr1:20987705-20987969(-)$1	264	127	161	12.0295
bb[gggggggeeeeennnnneeeee]ggggggg]	chr14:24899818-24900084(+)$1	266	199	233	14.5281
bb"""ccc[a[bbcccnnnnnccc]bba]ccc]b	chr16:28986030-28986259(+)$1	229	27	61	12.2922
fff[ccc[dddd[bbnnnnnbb333ddddccc]f	chrX:119602859-119603078(-)$1	219	21	55	13.3146
c"""ccc"""bb[bboooooobbbbccc333ccc	chr17:61678276-61678563(+)$1	287	37	71	10.9048
ee[a[eeeee[ddddnnnnndddd]eeeee]a]e	chr1:1309984-1310200(-)$1	216	86	120	13.7538
[bb[bb[ccc[bb[annnnna]bb]ccc]bbbb]	chr2:20646985-20647371(+)$1	386	147	181	12.2125
[ccccccdddd!!bbnnnnnbbdddd22ccc444	chr11:62559281-62559573(-)$1	292	173	207	13.3779
!!eeeee[cccddddnnnnndddd333ccc]eee	chr16:46918542-46918818(+)$1	276	154	188	14.3251
b[bb[eeeeeeeeeennnnneeeee]eeeeebb]	chr2:32582276-32582563(+)$1	287	115	149	12.5581
ffffff"""ccccccnnnnnccc]ccc333ffff	chr4:1857493-1857764(-)$1	271	231	265	13.9265
bb!!dddd[bbddddnnnnndddd]bb]dddd]b	chr21:34787098-34787380(+)$1	282	129	163	13.0135
c[a!!bb!!ffffffnnnnnffffff22bb22a]	chr6:43738436-43738696(+)$1	260	72	106	12.7212
ddd[ffffffccc[annnnna]ccc4444fffff	chr19:13049354-13049597(+)$1	243	193	227	13.5530
f"""ddddgggggggnnnnnggggggg]dddd55	chr9:33167003-33167278(-)$1	275	161	195	12.3317
cc"""cccgggggggnnnnnggggggg4444ccc	chr4:177241221-177241465(+)$1	244	18	52	15.3059
eee[cccdddd[bboooooobb4444dddd]ccc	chrX:150565613-150565886(+)$1	273	4	38	10.0690
ddd[ffffff!!cccnnnnnccc]ffffff]ddd	chr5:179247832-179248121(+)$1	289	28	62	13.1893

#otherMatches

#Seq PSSM
AGGAGGACCUGAAGCAGCUGGUGGGUCCUGGCUC	chr5:36241566-36241824(-)$1	258	204	238	13.7684
GGCCGCACCAUGGCCCUAAAGGCCGAGGGCGCCG	chr11:63580938-63581266(+)$1	328	211	245	12.8604
GAUCGACCGUAAGGUGUACAACAUCAGCGAGUUC	chr11:61584019-61584276(-)$1	257	156	190	10.2193
CCGGCGGCCGCCAUGGCGGACAGCGGCAccgcgg	chr11:64014040-64014328(-)$1	288	171	205	12.7026
AGAUUGCUGGCAUGGUGCUUCCUGCUGGCCCUGA	chrX:105970000-105970290(+)$1	290	197	231	14.2716
UCCGGUUUGGACCCUGAGGGAGGGACUUGGGUGG	chr17:4851456-4851673(-)$1	217	149	183	14.3003
GGGCGCGCAAGGCCGUGGUCCUGCUUUGUGCCUC	chr15:81281902-81282174(-)$1	272	58	92	13.9908
UGUGCUUCGUGCUCCUGUGCGGAGUAGUGGGUGA	chr21:18885347-18885591(+)$1	244	113	147	12.4355
UGCAGGCGCCAUGGUCUUCCUCACCGCGCAGCUC	chr1:1342448-1342757(-)$1	309	150	184	10.7248
GGCCUGCCUGUCCUGUUGCCCCAGGGGCCCCUUU	chr16:30899087-30899398(-)$1	311	219	253	11.9703
CGAUGGGUGACUGUGGGCGACACUUCCCUUCGUA	chr16:30904431-30904712(-)$1	281	108	142	13.4760
GGACAGCCCGAGGACUACAGGUCCCAAGGUUCCC	chr20:3026617-3026851(+)$1	234	2	36	11.2636
CCAAUGUUGUCCGGUGAGAAGGUGGUGGAGGGUU	chr12:58145234-58145527(-)$1	293	232	266	13.4941
UCUCGCUGUUAGCGCUGCUCGCGCUGCUGGGAgg	chr4:22517197-22517505(-)$1	308	153	187	14.2597
CGCAUCGACCCCACCGUGCUGCUGGGCGCGCUGC	chr11:47587032-47587328(+)$1	296	259	293	13.8248
AACUAUCUGAGCGGUGAGUGGCCGUgccgggccg	chr7:30068182-30068488(+)$1	306	223	257	12.8314
GGCGGCGGUGUGCGCAGACAGUGCUCCAGCCGCG	chr6:43738787-43739027(+)$1	240	21	55	13.9723
CCUCCGGCCAGGUGAGACCAUCGCAGGGUUUGAG	chr7:56173955-56174190(-)$1	235	123	157	14.2098
GCGGCCAAGGCUGUAGCUCAUAUAGGUGGCCUUU	chr11:47431540-47431818(+)$1	278	51	85	13.9646
UUCCACUGCGAUAGGAAUCAUGUCUGGUCGCGGC	chr6:26104081-26104357(+)$1	276	75	109	10.6978
GGCUCAGAUCUCAGCCCACAGCUGGCCUGAUCUG	chr11:116707770-116707973(-)$1	203	45	79	15.9319
CCCUGGUGCCGCGUGCCUUCCAUGCUUCAGCUGU	chr16:57484850-57485125(+)$1	275	119	153	14.2868
UACCUCAUCGGGGCGGUGAUUGCCGGGUGAGGAA	chr3:186288500-186288797(+)$1	297	228	262	14.2828
CCGAGCCGCCGGCGGACGAGGCCGCCCGCGCGGG	chr10:119134496-119134809(-)$1	313	162	196	11.1680
GCGCAGGGAUCGAGGUAGCGCUCGCACCCCAUUG	chr4:2263578-2263921(-)$1	343	264	298	11.4589
AGGGGGCUCCCGGUCCCGCAGGCCGAGGGGGAGA	chr3:184429397-184429644(-)$1	247	56	90	12.3141
UGGGCGCGCGAUGGGCAGGUCCCUCCAGCCUCCC	chr12:113796394-113796733(+)$1	339	155	189	14.6430
GCCGUGUGGGUGCUGGACAGCGGCAGCGUGCGCG	chr9:139137317-139137568(-)$1	251	102	136	15.0412
gcaauggcggggcggggUUCGCCGCUCCCUGGGG	chr4:37687807-37688082(-)$1	275	38	72	11.4291
CGCGCAAGGCUGGGGCAAAACCCGGGCCGGGAUA	chr20:57617649-57617988(-)$1	339	8	42	14.0472
GUACCCGGCGGAGCGCGCGCCCGCCCCCGAGUGC	chr20:61427739-61428047(+)$1	308	36	70	10.2039
CCGGGCACCCGCGUUCAUGCAACGCCUGGUGGCC	chr20:48807404-48807671(+)$1	267	150	184	14.9548
GUGCUUGGUGAGCCCGGGGAGGGCGGGCCGAGGG	chr17:76164647-76164897(+)$1	250	142	176	13.5831
GCCCCGCUACCGGACUACAUGUCGGAGGAGAAGC	chr17:1587695-1587961(-)$1	266	150	184	13.4220
UGGAGCCCAGCACCGCGGCCCGGGCUUGGGCCCU	chr1:20987705-20987969(-)$1	264	127	161	12.0295
CAGCCCCAUGUGGAGCGCAUCUUCAGCGUGGGGG	chr14:24899818-24900084(+)$1	266	199	233	14.5281
GGCUUGCCCGCGGGGACCCCUUCCACCCUGGCUC	chr16:28986030-28986259(+)$1	229	27	61	12.2922
cgucgccgccgucgccgccUGCUCUGCGGGGUCA	chrX:119602859-119603078(-)$1	219	21	55	13.3146
CCAAGCCUUUGGAUCUCAGGUGACCGGCACAGGC	chr17:61678276-61678563(+)$1	287	37	71	10.9048
CCCAGCUGUUGAGGGCCGUUCCUUGGGCAGGUAG	chr1:1309984-1310200(-)$1	216	86	120	13.7538
ACCUGCGCGCAGCCCGAGGUGAGCAGUGAGCGGC	chr2:20646985-20647371(+)$1	386	147	181	12.2125
CGGCCCCUGCAAGGCACGACGCUGCAACGGGAUG	chr11:62559281-62559573(-)$1	292	173	207	13.3779
CAGAGCAGCGCGGCCGCCGAGGCCUCGGCGGUGC	chr16:46918542-46918818(+)$1	276	154	188	14.3251
UGGCUGGUGCUGCGGGACGGCUGCAUGCACUGCG	chr2:32582276-32582563(+)$1	287	115	149	12.5581
CCCGCGGGUUCGGGCUGGUUGUCACGGCGAUGCG	chr4:1857493-1857764(-)$1	271	231	265	13.9265
CGAAGAUUCGCCUGUACAACGCAGAGCAGGUCCU	chr21:34787098-34787380(+)$1	282	129	163	13.0135
GACAGUGGAcgcggcggcgagccgcgggcagggg	chr6:43738436-43738696(+)$1	260	72	106	12.7212
CCUGCCGUCUACUUCAAGGAGCAGUUUCUGGACG	chr19:13049354-13049597(+)$1	243	193	227	13.5530
GUCCCUACAGCGGGCCUGCCGCCUGCUCGUGGCC	chr9:33167003-33167278(-)$1	275	161	195	12.3317
CUGUCGCGGGCGAACUCACUGUUCGCCUUCUCGC	chr4:177241221-177241465(+)$1	244	18	52	15.3059
CCGCCGCCCGGCGCGAACGGGCACUUCCGGCGCG	chrX:150565613-150565886(+)$1	273	4	38	10.0690
GCCUCCGCGUUCGCUACAAAAGCCGCGCGGCGGC	chr5:179247832-179248121(+)$1	289	28	62	13.1893

#DB
((.(((((((...((.....)))))))))..)))	chr5:36241566-36241824(-)$1	1	204	238	13.7684
(((.((.((.(((((.....))))).))))))))	chr11:63580938-63581266(+)$1	1	211	245	12.8604
((...(((((..(((((...))))).))).))))	chr11:61584019-61584276(-)$1	1	156	190	10.2193
((.((((..(((.((.....))..))).)))).)	chr11:64014040-64014328(-)$1	1	171	205	12.7026
((...(((((((.((.....))))))))).))))	chrX:105970000-105970290(+)$1	1	197	231	14.2716
(((.(...((.((((.....)))).))....).)	chr17:4851456-4851673(-)$1	1	149	183	14.3003
.((.(((((((((.(.....).)))))))))..)	chr15:81281902-81282174(-)$1	1	58	92	13.9908
(..((((..((((((.....))))))..)))).)	chr21:18885347-18885591(+)$1	1	113	147	12.4355
.((..((((..(((......)))..)))).))..	chr1:1342448-1342757(-)$1	1	150	184	10.7248
((...(((...((((......)))))))....))	chr16:30899087-30899398(-)$1	1	219	253	11.9703
(((.(((.....(((.....)))..))).)))).	chr16:30904431-30904712(-)$1	1	108	142	13.4760
(((..(((...(((((...)))))...)))))))	chr20:3026617-3026851(+)$1	1	2	36	11.2636
(((((.((.((((.(.....).))).).)).)))	chr12:58145234-58145527(-)$1	1	232	266	13.4941
.(((.(.((.(((((.....))))))).).))))	chr4:22517197-22517505(-)$1	1	153	187	14.2597
.(((.((..((((.(.....).))))..)).)))	chr11:47587032-47587328(+)$1	1	259	293	13.8248
..))))(((.(((((.....)))))..)))(((.	chr7:30068182-30068488(+)$1	1	223	257	12.8314
(((((((((..((((.....))))....))))).	chr6:43738787-43739027(+)$1	1	21	55	13.9723
)(((.((((..((((.....))))..)))).)))	chr7:56173955-56174190(-)$1	1	123	157	14.2098
..(((((...(((((.....))))).)))))...	chr11:47431540-47431818(+)$1	1	51	85	13.9646
((...(((((((.(((......))).))))))).	chr6:26104081-26104357(+)$1	1	75	109	10.6978
(((((((((((((((.....)))))...))))))	chr11:116707770-116707973(-)$1	1	45	79	15.9319
(((((.((..(((((.....)))))..)).)...	chr16:57484850-57485125(+)$1	1	119	153	14.2868
..(((((((..((((.....)))).)))))))..	chr3:186288500-186288797(+)$1	1	228	262	14.2828
((..(((((((((((......))).))).)).))	chr10:119134496-119134809(-)$1	1	162	196	11.1680
((((((((..((((......))))..)))...))	chr4:2263578-2263921(-)$1	1	264	298	11.4589
))).))(((((((((.....))))).))))(((.	chr3:184429397-184429644(-)$1	1	56	90	12.3141
.(((.(.((...(((.....)))....))).)))	chr12:113796394-113796733(+)$1	1	155	189	14.6430
.(((((((.((((((.....))))).).))))))	chr9:139137317-139137568(-)$1	1	102	136	15.0412
((..(((.(((((((......))))))))))..)	chr4:37687807-37688082(-)$1	1	38	72	11.4291
(...(..((((.(((.....))).))))..)...	chr20:57617649-57617988(-)$1	1	8	42	14.0472
((((.(((.((.(((......)))))))).))))	chr20:61427739-61428047(+)$1	1	36	70	10.2039
(((((((((.(((((.....)))))..))).)))	chr20:48807404-48807671(+)$1	1	150	184	14.9548
((.((((((..((((.....))))..)))))).)	chr17:76164647-76164897(+)$1	1	142	176	13.5831
((..(.((.(((.((.....))))).)).)..))	chr17:1587695-1587961(-)$1	1	150	184	13.4220
.((.(((((((.(((.....))))).))))))))	chr1:20987705-20987969(-)$1	1	127	161	12.0295
((.((((((((((((.....))))).))))))).	chr14:24899818-24900084(+)$1	1	199	233	14.5281
((...(((.(.(((((.....))).))).))).)	chr16:28986030-28986259(+)$1	1	27	61	12.2922
(((.(((.((((.((.....))...))))))).)	chrX:119602859-119603078(-)$1	1	21	55	13.3146
(...(((...((.((......)))))))...)))	chr17:61678276-61678563(+)$1	1	37	71	10.9048
((.(.(((((.((((.....)))).))))).).)	chr1:1309984-1310200(-)$1	1	86	120	13.7538
.((.((.(((.((.(.....).)).))).)))).	chr2:20646985-20647371(+)$1	1	147	181	12.2125
.((((((((((..((.....))))))..)))...	chr11:62559281-62559573(-)$1	1	173	207	13.3779
..(((((.(((((((.....))))...))).)))	chr16:46918542-46918818(+)$1	1	154	188	14.3251
(.((.((((((((((.....))))).))))))).	chr2:32582276-32582563(+)$1	1	115	149	12.5581
((((((...((((((.....))).)))...))))	chr4:1857493-1857764(-)$1	1	231	265	13.9265
((..((((.((((((.....)))).)).)))).)	chr21:34787098-34787380(+)$1	1	129	163	13.0135
(.(..((..((((((.....))))))..))..).	chr6:43738436-43738696(+)$1	1	72	106	12.7212
(((.(((((((((.(.....).)))....)))))	chr19:13049354-13049597(+)$1	1	193	227	13.5530
(...(((((((((((.....))))))).))))..	chr9:33167003-33167278(-)$1	1	161	195	12.3317
((...((((((((((.....)))))))....)))	chr4:177241221-177241465(+)$1	1	18	52	15.3059
(((.(((((((.((......))....)))).)))	chrX:150565613-150565886(+)$1	1	4	38	10.0690
(((.((((((..(((.....))).)))))).)))	chr5:179247832-179248121(+)$1	1	28	62	13.1893

#PSSM
d : 0.21	[ : 0.17	f : 0.13	c : 0.11	b : 0.09	e : 0.09	g : 0.03	h : 0.01	2 : 0.01	$ : 0.01	= : 0.01	# : 0.01	a : 0.01	! : 0.01	
d : 0.21	c : 0.17	b : 0.13	f : 0.09	e : 0.09	g : 0.05	" : 0.05	! : 0.03	[ : 0.03	h : 0.01	2 : 0.01	$ : 0.01	= : 0.01	# : 0.01	
" : 0.17	d : 0.11	c : 0.11	[ : 0.09	b : 0.09	! : 0.09	f : 0.09	e : 0.09	g : 0.07	= : 0.01	a : 0.01	
[ : 0.19	" : 0.17	! : 0.13	c : 0.11	g : 0.09	f : 0.09	d : 0.05	e : 0.05	= : 0.01	] : 0.01	a : 0.01	b : 0.01	
c : 0.13	[ : 0.13	" : 0.11	g : 0.09	d : 0.09	f : 0.09	e : 0.09	a : 0.07	b : 0.05	! : 0.05	i : 0.01	= : 0.01	
c : 0.24	g : 0.13	d : 0.13	b : 0.11	e : 0.11	f : 0.07	[ : 0.05	a : 0.03	" : 0.01	i : 0.01	= : 0.01	! : 0.01	
c : 0.28	d : 0.13	g : 0.11	b : 0.11	e : 0.11	[ : 0.07	f : 0.05	" : 0.03	i : 0.01	= : 0.01	! : 0.01	
c : 0.19	d : 0.15	b : 0.13	g : 0.11	! : 0.07	" : 0.07	e : 0.07	[ : 0.05	f : 0.05	i : 0.01	$ : 0.01	= : 0.01	
g : 0.15	d : 0.13	! : 0.11	[ : 0.11	b : 0.09	c : 0.09	" : 0.09	e : 0.07	f : 0.05	i : 0.01	$ : 0.01	= : 0.01	
g : 0.13	c : 0.13	! : 0.13	d : 0.11	" : 0.09	[ : 0.07	b : 0.07	f : 0.07	a : 0.05	e : 0.03	i : 0.01	$ : 0.01	= : 0.01	
e : 0.21	! : 0.13	c : 0.13	d : 0.11	g : 0.09	" : 0.07	[ : 0.07	b : 0.07	f : 0.03	i : 0.01	$ : 0.01	
e : 0.23	d : 0.23	c : 0.13	g : 0.09	[ : 0.07	! : 0.05	b : 0.05	" : 0.03	f : 0.03	i : 0.01	$ : 0.01	
e : 0.24	d : 0.21	c : 0.21	[ : 0.11	g : 0.05	b : 0.05	f : 0.03	" : 0.01	i : 0.01	! : 0.01	
e : 0.24	c : 0.21	d : 0.19	b : 0.15	[ : 0.09	g : 0.05	f : 0.03	
e : 0.24	c : 0.19	d : 0.17	b : 0.13	a : 0.09	o : 0.05	g : 0.05	f : 0.03	
n : 0.76	o : 0.15	e : 0.03	c : 0.03	
n : 0.78	o : 0.17	e : 0.01	l : 0.01	
n : 0.78	o : 0.17	l : 0.03	
n : 0.78	o : 0.17	l : 0.03	
n : 0.78	o : 0.17	l : 0.01	e : 0.01	
e : 0.24	d : 0.17	b : 0.13	c : 0.13	o : 0.11	a : 0.09	f : 0.03	g : 0.03	n : 0.01	
e : 0.24	d : 0.19	c : 0.19	b : 0.15	] : 0.09	g : 0.05	f : 0.03	o : 0.01	
c : 0.26	e : 0.24	d : 0.23	g : 0.09	f : 0.03	b : 0.03	2 : 0.01	i : 0.01	3 : 0.01	4 : 0.01	
e : 0.24	d : 0.23	c : 0.13	g : 0.09	2 : 0.05	] : 0.05	b : 0.05	f : 0.03	4 : 0.03	i : 0.01	3 : 0.01	
e : 0.23	] : 0.13	c : 0.11	g : 0.09	2 : 0.09	d : 0.07	f : 0.05	3 : 0.05	4 : 0.05	b : 0.05	i : 0.01	
] : 0.21	c : 0.13	g : 0.11	2 : 0.11	b : 0.09	d : 0.09	4 : 0.07	f : 0.05	3 : 0.05	i : 0.01	e : 0.01	
c : 0.19	g : 0.15	2 : 0.13	b : 0.11	d : 0.11	e : 0.07	3 : 0.05	4 : 0.05	a : 0.03	f : 0.03	i : 0.01	
c : 0.23	g : 0.11	] : 0.11	d : 0.11	b : 0.07	4 : 0.07	2 : 0.07	e : 0.07	3 : 0.03	f : 0.03	i : 0.01	a : 0.01	
c : 0.17	d : 0.17	g : 0.11	b : 0.11	] : 0.09	e : 0.09	4 : 0.07	f : 0.03	3 : 0.03	i : 0.01	a : 0.01	= : 0.01	2 : 0.01	
d : 0.15	c : 0.15	b : 0.11	] : 0.11	e : 0.09	g : 0.07	4 : 0.05	3 : 0.05	f : 0.05	2 : 0.03	a : 0.03	i : 0.01	= : 0.01	
] : 0.17	c : 0.15	d : 0.13	b : 0.07	e : 0.07	g : 0.07	f : 0.07	2 : 0.05	4 : 0.05	a : 0.03	3 : 0.03	i : 0.01	= : 0.01	
c : 0.24	d : 0.15	b : 0.09	f : 0.09	g : 0.09	2 : 0.07	3 : 0.07	a : 0.03	4 : 0.03	e : 0.03	= : 0.01	] : 0.01	
c : 0.23	] : 0.15	d : 0.11	3 : 0.07	f : 0.07	g : 0.07	e : 0.05	b : 0.05	2 : 0.03	h : 0.01	= : 0.01	> : 0.01	4 : 0.01	a : 0.01	5 : 0.01	
c : 0.15	d : 0.15	f : 0.13	] : 0.11	b : 0.07	3 : 0.07	g : 0.05	e : 0.05	= : 0.03	h : 0.01	l : 0.01	2 : 0.01	> : 0.01	! : 0.01	4 : 0.01	5 : 0.01	

#score	679.4139922306772
#seq	52
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_UTR_m2_run2.txt

#BEAR
ggggg[cccqqqqqqqqccc22ggg	chr5:118809554-118809807(+)$1	253	22	47	17.2183
ffffffcccqqqqqqqqccc]ffff	chr1:31479798-31480021(-)$1	223	187	212	15.8326
$ccc[ddddqqqqqqqqddddccc4	chr8:38091820-38092107(+)$1	287	77	102	15.8011
Fccc[ddddqqqqqqqqddddccc:	chr2:153529416-153529648(-)$1	232	205	230	14.7831
gg!!eeeeeqqqqqqqqeeeee22g	chr8:100654372-100654624(+)$1	252	203	228	15.3187
ehhhhhhhhqqqqqqqqhhhhhhhh	chr7:77240013-77240258(+)$1	245	135	160	14.5685
"hhhhhhhhqqqqqqqqhhhhhhhh	chr6:132207629-132207888(+)$1	259	21	46	14.6829
!!ddddcccqqqqqqqqccc]dddd	chr17:27001293-27001550(+)$1	257	158	183	15.6766
c[gggggggqqqqqqqqggggggg]	chr8:56675372-56675637(-)$1	265	234	259	16.2965
fffff[cccqqqqqqqqcccfffff	chr3:50004810-50005084(+)$1	274	94	119	15.8822
bb[ffffffqqqqqqqqffffff]b	chr14:31588844-31589127(-)$1	283	91	116	13.9106
ggggg!!bbqqqqqqqqbb22gggg	chr7:143548942-143549205(-)$1	263	51	76	15.5305
ffff!!cccqqqqqqqqccc22fff	chr7:86817467-86817718(+)$1	251	137	162	16.5921
iiiiiiiiiqqqqqqqqiiiiiiii	chr3:108330056-108330279(+)$1	223	117	142	16.4140
$$$$$ddddqqqqqqqqdddd333b	chrX:122802020-122802262(-)$1	242	147	172	14.9635
ccc"""cccqqqqqqqqcccccc]e	chr2:128886526-128886763(+)$1	237	192	217	16.6482
:ccc[ddddqqqqqqqqddddccc:	chr2:153529391-153529616(-)$1	225	173	198	14.2779
[bb[eeeeeqqqqqqqqeeeee]bb	chr2:61709507-61709774(-)$1	267	108	133	14.4174
eee"""cccqqqqqqqqccceeeee	chr5:139905664-139905912(+)$1	248	122	147	16.0707
cc[a!!cccqqqqqqqqccc22a]c	chr17:35687014-35687362(-)$1	348	191	216	17.1584
c!!bbddddqqqqqqqqdddd]bb2	chr18:19203628-19203879(+)$1	251	180	205	14.7419
eeeee[cccqqqqqqqqccc]eeee	chr7:42957054-42957347(-)$1	293	232	257	16.1023
fff!!ddddqqqqqqqqddddffff	chr12:112528459-112528744(-)$1	285	231	256	15.8021
eeee!!cccqqqqqqqqccc]eeee	chr14:73566274-73566570(+)$1	296	25	50	16.3975
ff"""ddddqqqqqqqqdddd333f	chr7:148543505-148543770(-)$1	265	233	258	16.2411
====!!cccqqqqqqqqccc22===	chr16:46731325-46731656(+)$1	331	248	273	17.3460
##ccc[cccqqqqqqqqccc]ccc3	chr18:51820050-51820438(+)$1	388	241	266	16.6826
:ccc[cccaqqqqqqqqa]ccc]cc	chr4:107156325-107156557(-)$1	232	53	78	15.5412
fff####bbqqqqqqqqbb4444ff	chr3:12660026-12660307(-)$1	281	165	190	14.6217
gggggg[bbqqqqqqqqbb]ggggg	chr9:74326941-74327203(-)$1	262	204	229	15.5777
ccc!!ddddqqqqqqqqdddd22cc	chr12:123006587-123006864(-)$1	277	131	156	16.4195
cdddd[cccqqqqqqqqccc]dddd	chr18:9208548-9208800(+)$1	252	217	242	15.6339
ffffffcccqqqqqqqqccc22fff	chr3:108326835-108327085(+)$1	250	19	44	15.8948
!hhhhhhhhqqqqqqqqhhhhhhhh	chr15:93435136-93435378(+)$1	242	19	44	14.7226
bhhhhhhhhqqqqqqqqhhhhhhhh	chr2:61719359-61719629(-)$1	270	166	191	14.6126
bb[dddd[aqqqqqqqqa]ddddbb	chr6:56380162-56380470(-)$1	308	248	273	14.5341
=========qqqqqqqq========	chr17:67252196-67252438(-)$1	242	132	157	16.2532
dddd[ddddqqqqqqqqdddddddd	chr15:34445025-34445302(-)$1	277	217	242	14.8181
ggggggg[aqqqqqqqqa]gggggg	chr1:46073387-46073645(+)$1	258	181	206	16.2281
b[a!!ddddqqqqqqqqdddd22a]	chr17:45656705-45656960(+)$1	255	104	129	16.2825
b[gggggggqqqqqqqqggggggg2	chr4:128851859-128852073(-)$1	214	151	176	16.0020
beeeeeabbqqqqqqqqbb]a]eee	chr11:77671898-77672145(-)$1	247	23	48	14.3950
ffffff[bbqqqqqqqqbb]fffff	chr3:180693884-180694166(+)$1	282	166	191	14.1149
ggggg[cccqqqqqqqqccc]gggg	chr5:79743814-79744077(+)$1	263	104	129	17.3023
[hhhhhhhhqqqqqqqqhhhhhhhh	chr12:62887641-62887923(+)$1	282	79	104	14.7242
eee[eeeeeqqqqqqqqeeeeeeee	chr3:167727595-167727858(-)$1	263	190	215	14.7040
ffff[ddddqqqqqqqqdddd22ff	chr14:53190588-53190862(+)$1	274	155	180	15.8169
ccc[eeeeeqqqqqqqqeeeee]cc	chr2:159481794-159482046(+)$1	252	58	83	15.4103
dddd!!cccqqqqqqqqccc333dd	chr7:26251223-26251477(+)$1	254	31	56	16.4399
Fhhhhhhhhqqqqqqqqhhhhhhhh	chrX:151127311-151127569(-)$1	258	217	242	14.3415
eeeee[cccqqqqqqqqccc333ee	chr2:54123897-54124108(-)$1	211	142	167	16.5634
hhhhhddddqqqqqqqqdddd]hhh	chr3:42683949-42684189(+)$1	240	135	160	15.1434
iiiii[cccqqqqqqqqccciiiii	chr9:115200609-115200839(+)$1	230	82	107	17.1964
cc[ffffffqqqqqqqqffffff33	chr8:19687902-19688169(+)$1	267	91	116	14.4189
b!!dddd[aqqqqqqqqadddd22b	chr12:56510457-56510680(+)$1	223	16	41	15.1968
BBgggggggqqqqqqqqggggggg:	chrX:119058965-119059349(-)$1	384	303	328	13.4666
[dddd!!bbqqqqqqqqbb22dddd	chr10:79584045-79584293(-)$1	248	134	159	13.8947
ff!!ccc[aqqqqqqqqaccc22ff	chr13:28009475-28009797(+)$1	322	209	234	16.2707
bb!!eeeeeqqqqqqqqeeeee333	chr3:57847574-57847850(+)$1	276	117	142	15.2926
b####ddddqqqqqqqqdddd4444	chr14:21460174-21460463(+)$1	289	108	133	15.5112

#otherMatches

#Seq PSSM
GUUGUUUGCUUGUUUUUGCAUUACA	chr5:118809554-118809807(+)$1	253	22	47	17.2183
UAGAUCUAGCAUCUGUACUGUGAUU	chr1:31479798-31480021(-)$1	223	187	212	15.8326
UCAAUCCUUGAAAGGAAAAGGUUGU	chr8:38091820-38092107(+)$1	287	77	102	15.8011
CCUAGCACAUUUAAAGUUGUGUAGA	chr2:153529416-153529648(-)$1	232	205	230	14.7831
GGAACUGGUGACUUACAGCUAGAGC	chr8:100654372-100654624(+)$1	252	203	228	15.3187
UACAAACAAAGGUAUAGUUGUUUGU	chr7:77240013-77240258(+)$1	245	135	160	14.5685
AAAGGAAGAUAGUUAUUUCUUUCUU	chr6:132207629-132207888(+)$1	259	21	46	14.6829
AAAACGCAGUGAGUAGUCUGUCGUU	chr17:27001293-27001550(+)$1	257	158	183	15.6766
AUUUUGCAAACUAUCUCUUGUGGGU	chr8:56675372-56675637(-)$1	265	234	259	16.2965
GGAGCCAAGAAGAAAGGUUUGCUCC	chr3:50004810-50005084(+)$1	274	94	119	15.8822
AGAACAUGGGAUGAUGAUUAUGUGC	chr14:31588844-31589127(-)$1	283	91	116	13.9106
GUAGGGAAGAAAAUAUCCUAGCUUA	chr7:143548942-143549205(-)$1	263	51	76	15.5305
AUCACCCAUGUUUGUAAGUGUUUGA	chr7:86817467-86817718(+)$1	251	137	162	16.5921
CAGGUAACGUCAUAAGUUGUUAUUU	chr3:108330056-108330279(+)$1	223	117	142	16.4140
GGAAGCUAAGCAAAUUGUUAGAAAG	chrX:122802020-122802262(-)$1	242	147	172	14.9635
ACUAUGCCGUAGACAUCCGGAGUCC	chr2:128886526-128886763(+)$1	237	192	217	16.6482
CCUAGCACAUUUAAAGUUGUGUAGA	chr2:153529391-153529616(-)$1	225	173	198	14.2779
AUGCAUGCAUCAAUUCUUGCAUAUA	chr2:61709507-61709774(-)$1	267	108	133	14.4174
UCUUUAGCCCAACAAAAGGCAGAUA	chr5:139905664-139905912(+)$1	248	122	147	16.0707
GAUACACUCUCUGAUUUGGGGAUCU	chr17:35687014-35687362(-)$1	348	191	216	17.1584
CAUUCGGUAUUUUAUUCUACCAGAC	chr18:19203628-19203879(+)$1	251	180	205	14.7419
AAAGUAUGUUUUGUUUUGCAGACUU	chr7:42957054-42957347(-)$1	293	232	257	16.1023
UCAUUGUUUUUAAACUUGAGCUGAA	chr12:112528459-112528744(-)$1	285	231	256	15.8021
AUAUCUAACCUUUAACUGUUUAUAU	chr14:73566274-73566570(+)$1	296	25	50	16.3975
UAAUUAUCAUCAUCUUUUGGUUUAU	chr7:148543505-148543770(-)$1	265	233	258	16.2411
UUUUGUUUAAACUUUUAUAAUAAGG	chr16:46731325-46731656(+)$1	331	248	273	17.3460
UGUCCAUUACAUGCCUCUAGAGGAG	chr18:51820050-51820438(+)$1	388	241	266	16.6826
CCAAAUCUGGAAAGAAGCAAGAGUU	chr4:107156325-107156557(-)$1	232	53	78	15.5412
UGCAUCUCUCCUACAAUAGUUCAGC	chr3:12660026-12660307(-)$1	281	165	190	14.6217
UGUAAGUAUGUUCUGUAGUUCUUAC	chr9:74326941-74327203(-)$1	262	204	229	15.5777
UUCAAGAUCACGAUCAAGGUCAAGA	chr12:123006587-123006864(-)$1	277	131	156	16.4195
UUCUUAUGCAGAUGACAGCAAGAGA	chr18:9208548-9208800(+)$1	252	217	242	15.6339
AAUUGUUAGAUUCUUUACUACUACA	chr3:108326835-108327085(+)$1	250	19	44	15.8948
UUUGGGUAUAAAUCAUGGUGCUUAA	chr15:93435136-93435378(+)$1	242	19	44	14.7226
CAUGGUAAAUCUCUUUCUUUACUAU	chr2:61719359-61719629(-)$1	270	166	191	14.6126
UGUAUUCCCCAUUAAAAGAGAAUCA	chr6:56380162-56380470(-)$1	308	248	273	14.5341
UGUGAGGAGGUAAUUUAUUCUUUAU	chr17:67252196-67252438(-)$1	242	132	157	16.2532
ACCAUGAUAGUCGAACAUAUUUGGU	chr15:34445025-34445302(-)$1	277	217	242	14.8181
UUCUUGAACAACUGGUAGGUCAAGA	chr1:46073387-46073645(+)$1	258	181	206	16.2281
GUUUCUAUAGAAGUAAAUAUACUAC	chr17:45656705-45656960(+)$1	255	104	129	16.2825
CUGUGUUAUAUAAUGGCAUAAUACU	chr4:128851859-128852073(-)$1	214	151	176	16.0020
CUCUUUGGAGAAAAGUGUCACAAAA	chr11:77671898-77672145(-)$1	247	23	48	14.3950
GAAGCAGCAGUCCUGAAUGGUGUUU	chr3:180693884-180694166(+)$1	282	166	191	14.1149
AAAUGAGAUAAUUCAGAGUCCUAUU	chr5:79743814-79744077(+)$1	263	104	129	17.3023
GUACAGCCUUUUUUAAUGGGUUGUG	chr12:62887641-62887923(+)$1	282	79	104	14.7242
AGUACUGCAAAAUGCCAUGCAGACU	chr3:167727595-167727858(-)$1	263	190	215	14.7040
UACUGAAGCAGGUAAGGGUUUAAAG	chr14:53190588-53190862(+)$1	274	155	180	15.8169
GGACUGUUCAUGACAUGGAGCAAUU	chr2:159481794-159482046(+)$1	252	58	83	15.4103
CUGUAUGAAAAAAUGUCUUCUAAAC	chr7:26251223-26251477(+)$1	254	31	56	16.4399
CUUUGCUUGCACAGUAUUAGGCAGG	chrX:151127311-151127569(-)$1	258	217	242	14.3415
GCUGACCAUUAACCCCUGUGAAAUC	chr2:54123897-54124108(-)$1	211	142	167	16.5634
ACAGGUGAGCUUGUGAUCUCACCCU	chr3:42683949-42684189(+)$1	240	135	160	15.1434
GUGUGUGUUUUCUCUACAGCCAUAC	chr9:115200609-115200839(+)$1	230	82	107	17.1964
CACUGAAGUGUUAGAAAGCUUUAAA	chr8:19687902-19688169(+)$1	267	91	116	14.4189
UCCGUGUACAAUCCAUAGACAUCUG	chr12:56510457-56510680(+)$1	223	16	41	15.1968
CUUCAAUAAAAAGCUGCUUAUUGAU	chrX:119058965-119059349(-)$1	384	303	328	13.4666
ACCCUGUCCCUCCUGAAGGUAAGGG	chr10:79584045-79584293(-)$1	248	134	159	13.8947
GUGUGGAAGACAAGAUGCUCUCGAC	chr13:28009475-28009797(+)$1	322	209	234	16.2707
CUGAAGAUGAAUGUACCCAUCUGAA	chr3:57847574-57847850(+)$1	276	117	142	15.2926
ACUUAUCUCAGACAGAGGAGAAACU	chr14:21460174-21460463(+)$1	289	108	133	15.5112

#DB
(((((.(((........)))..)))	chr5:118809554-118809807(+)$1	1	22	47	17.2183
(((((((((........))).))))	chr1:31479798-31480021(-)$1	1	187	212	15.8326
.(((.((((........))))))).	chr8:38091820-38092107(+)$1	1	77	102	15.8011
)(((.((((........))))))).	chr2:153529416-153529648(-)$1	1	205	230	14.7831
((..(((((........)))))..)	chr8:100654372-100654624(+)$1	1	203	228	15.3187
(((((((((........))))))))	chr7:77240013-77240258(+)$1	1	135	160	14.5685
.((((((((........))))))))	chr6:132207629-132207888(+)$1	1	21	46	14.6829
..(((((((........))).))))	chr17:27001293-27001550(+)$1	1	158	183	15.6766
(.(((((((........))))))).	chr8:56675372-56675637(-)$1	1	234	259	16.2965
(((((.(((........))))))))	chr3:50004810-50005084(+)$1	1	94	119	15.8822
((.((((((........)))))).)	chr14:31588844-31589127(-)$1	1	91	116	13.9106
(((((..((........))..))))	chr7:143548942-143549205(-)$1	1	51	76	15.5305
((((..(((........)))..)))	chr7:86817467-86817718(+)$1	1	137	162	16.5921
(((((((((........))))))))	chr3:108330056-108330279(+)$1	1	117	142	16.4140
.....((((........))))...)	chrX:122802020-122802262(-)$1	1	147	172	14.9635
(((...(((........)))))).)	chr2:128886526-128886763(+)$1	1	192	217	16.6482
.(((.((((........))))))).	chr2:153529391-153529616(-)$1	1	173	198	14.2779
.((.(((((........))))).))	chr2:61709507-61709774(-)$1	1	108	133	14.4174
(((...(((........))))))))	chr5:139905664-139905912(+)$1	1	122	147	16.0707
((.(..(((........)))..).)	chr17:35687014-35687362(-)$1	1	191	216	17.1584
(..((((((........)))).)).	chr18:19203628-19203879(+)$1	1	180	205	14.7419
(((((.(((........))).))))	chr7:42957054-42957347(-)$1	1	232	257	16.1023
(((..((((........))))))))	chr12:112528459-112528744(-)$1	1	231	256	15.8021
((((..(((........))).))))	chr14:73566274-73566570(+)$1	1	25	50	16.3975
((...((((........))))...)	chr7:148543505-148543770(-)$1	1	233	258	16.2411
((((..(((........)))..)))	chr16:46731325-46731656(+)$1	1	248	273	17.3460
..(((.(((........))).))).	chr18:51820050-51820438(+)$1	1	241	266	16.6826
.(((.((((........).))).))	chr4:107156325-107156557(-)$1	1	53	78	15.5412
(((....((........))....))	chr3:12660026-12660307(-)$1	1	165	190	14.6217
((((((.((........)).)))))	chr9:74326941-74327203(-)$1	1	204	229	15.5777
(((..((((........))))..))	chr12:123006587-123006864(-)$1	1	131	156	16.4195
(((((.(((........))).))))	chr18:9208548-9208800(+)$1	1	217	242	15.6339
(((((((((........)))..)))	chr3:108326835-108327085(+)$1	1	19	44	15.8948
.((((((((........))))))))	chr15:93435136-93435378(+)$1	1	19	44	14.7226
)((((((((........))))))))	chr2:61719359-61719629(-)$1	1	166	191	14.6126
((.((((.(........).))))))	chr6:56380162-56380470(-)$1	1	248	273	14.5341
(((((((((........))))))))	chr17:67252196-67252438(-)$1	1	132	157	16.2532
((((.((((........))))))))	chr15:34445025-34445302(-)$1	1	217	242	14.8181
(((((((.(........).))))))	chr1:46073387-46073645(+)$1	1	181	206	16.2281
(.(..((((........))))..).	chr17:45656705-45656960(+)$1	1	104	129	16.2825
(.(((((((........))))))).	chr4:128851859-128852073(-)$1	1	151	176	16.0020
(((((((((........)).).)))	chr11:77671898-77672145(-)$1	1	23	48	14.3950
((((((.((........)).)))))	chr3:180693884-180694166(+)$1	1	166	191	14.1149
(((((.(((........))).))))	chr5:79743814-79744077(+)$1	1	104	129	17.3023
.((((((((........))))))))	chr12:62887641-62887923(+)$1	1	79	104	14.7242
(((.(((((........))))))))	chr3:167727595-167727858(-)$1	1	190	215	14.7040
((((.((((........))))..))	chr14:53190588-53190862(+)$1	1	155	180	15.8169
(((.(((((........))))).))	chr2:159481794-159482046(+)$1	1	58	83	15.4103
((((..(((........)))...))	chr7:26251223-26251477(+)$1	1	31	56	16.4399
)((((((((........))))))))	chrX:151127311-151127569(-)$1	1	217	242	14.3415
(((((.(((........)))...))	chr2:54123897-54124108(-)$1	1	142	167	16.5634
(((((((((........)))).)))	chr3:42683949-42684189(+)$1	1	135	160	15.1434
(((((.(((........))))))))	chr9:115200609-115200839(+)$1	1	82	107	17.1964
((.((((((........))))))..	chr8:19687902-19688169(+)$1	1	91	116	14.4189
(..((((.(........)))))..)	chr12:56510457-56510680(+)$1	1	16	41	15.1968
))(((((((........))))))).	chrX:119058965-119059349(-)$1	1	303	328	13.4666
.((((..((........))..))))	chr10:79584045-79584293(-)$1	1	134	159	13.8947
((..(((.(........))))..))	chr13:28009475-28009797(+)$1	1	209	234	16.2707
((..(((((........)))))...	chr3:57847574-57847850(+)$1	1	117	142	15.2926
(....((((........))))....	chr14:21460174-21460463(+)$1	1	108	133	15.5112

#PSSM
f : 0.16	b : 0.15	c : 0.13	g : 0.09	e : 0.09	[ : 0.05	$ : 0.03	F : 0.03	! : 0.03	i : 0.03	: : 0.03	= : 0.03	d : 0.03	" : 0.01	# : 0.01	h : 0.01	B : 0.01	
f : 0.16	c : 0.15	h : 0.11	g : 0.09	e : 0.09	b : 0.06	d : 0.06	! : 0.05	[ : 0.05	i : 0.03	= : 0.03	# : 0.03	$ : 0.01	B : 0.01	
g : 0.13	f : 0.13	c : 0.13	h : 0.11	e : 0.09	! : 0.08	d : 0.08	[ : 0.06	i : 0.03	= : 0.03	$ : 0.01	b : 0.01	" : 0.01	a : 0.01	# : 0.01	
g : 0.13	f : 0.13	h : 0.11	d : 0.11	! : 0.09	c : 0.08	e : 0.06	" : 0.05	[ : 0.05	i : 0.03	= : 0.03	# : 0.03	$ : 0.01	a : 0.01	b : 0.01	
g : 0.13	e : 0.13	! : 0.13	h : 0.11	f : 0.09	[ : 0.09	d : 0.08	" : 0.05	i : 0.03	c : 0.03	# : 0.03	$ : 0.01	b : 0.01	= : 0.01	
d : 0.26	[ : 0.13	! : 0.11	e : 0.09	h : 0.09	f : 0.08	g : 0.08	" : 0.03	c : 0.03	i : 0.01	# : 0.01	= : 0.01	
c : 0.33	d : 0.24	h : 0.09	e : 0.08	g : 0.06	f : 0.03	! : 0.03	[ : 0.03	i : 0.01	# : 0.01	= : 0.01	a : 0.01	
c : 0.31	d : 0.21	h : 0.09	b : 0.09	e : 0.08	[ : 0.06	g : 0.05	f : 0.03	i : 0.01	= : 0.01	
c : 0.30	d : 0.21	h : 0.09	b : 0.09	e : 0.08	a : 0.08	g : 0.05	f : 0.03	i : 0.01	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.30	d : 0.21	h : 0.09	b : 0.09	e : 0.08	a : 0.08	g : 0.05	f : 0.03	i : 0.01	= : 0.01	
c : 0.31	d : 0.23	h : 0.09	b : 0.09	e : 0.08	g : 0.05	] : 0.05	f : 0.03	i : 0.01	= : 0.01	
c : 0.33	d : 0.24	h : 0.09	e : 0.08	g : 0.06	] : 0.05	f : 0.03	2 : 0.03	i : 0.01	4 : 0.01	= : 0.01	
d : 0.24	2 : 0.11	] : 0.11	e : 0.09	h : 0.09	g : 0.08	f : 0.06	c : 0.05	i : 0.03	3 : 0.03	4 : 0.01	= : 0.01	a : 0.01	
2 : 0.15	e : 0.13	g : 0.11	f : 0.09	c : 0.09	h : 0.09	d : 0.09	3 : 0.06	] : 0.05	i : 0.03	4 : 0.03	= : 0.01	
g : 0.13	f : 0.13	h : 0.11	2 : 0.09	c : 0.08	d : 0.08	3 : 0.08	e : 0.08	] : 0.05	i : 0.03	= : 0.03	4 : 0.03	a : 0.01	b : 0.01	
f : 0.15	g : 0.13	c : 0.11	h : 0.11	e : 0.09	d : 0.08	3 : 0.06	] : 0.05	b : 0.05	2 : 0.03	i : 0.03	= : 0.03	a : 0.01	4 : 0.01	
f : 0.16	h : 0.11	e : 0.11	g : 0.09	d : 0.08	b : 0.08	c : 0.06	: : 0.05	3 : 0.05	4 : 0.03	] : 0.03	i : 0.03	2 : 0.03	= : 0.03	

#score	932.7062152762408
#seq	60
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_CDS_m1_run2.txt

#BEAR
ffff[bbwwwwwwwwwwwwwwbbff	chr13:111545406-111545669(-)$1	263	152	177	20.5562
Hfffffftttttttttttffffffd	chrX:151123014-151123279(-)$1	265	131	156	21.5787
dgggggggtttttttttttgggggg	chr17:61895032-61895257(+)$1	225	48	73	21.7699
eeee[awwwwwwwwwwwwwwa]eee	chr11:57509565-57509820(+)$1	255	90	115	21.5585
[ffffffuuuuuuuuuuuuffffff	chr18:214588-214898(-)$1	310	84	109	23.2812
!ccc[ccctttttttttttccc]cc	chr19:59060610-59060862(+)$1	252	149	174	22.6782
dddd[ccctttttttttttccc]dd	chr11:294279-294550(+)$1	271	237	262	22.1240
ffffffvvvvvvvvvvvvvffffff	chr1:52254820-52255067(-)$1	247	55	80	22.4542
eeee[ccctttttttttttccceee	chr17:26904632-26904890(-)$1	258	164	189	22.8315
c!!ddddtttttttttttdddd22c	chr21:35275797-35276047(-)$1	250	135	160	21.7765
eeee[ccctttttttttttccc]ee	chr1:76260186-76260427(+)$1	241	163	188	23.0043
d!!ddddwwwwwwwwwwwwwwdddd	chr3:9876866-9877156(+)$1	290	8	33	20.4316
%%eeeeeuuuuuuuuuuuueeeee5	chr18:9126751-9127006(+)$1	255	156	181	21.4262
""eeeeeuuuuuuuuuuuueeeee]	chrM:10150-10366(+)$1	216	149	174	23.4023
iiiiiiiuuuuuuuuuuuuiiiiii	chr2:166801931-166802242(-)$1	311	235	260	22.7239
ccc[cccuuuuuuuuuuuuccc]cc	chr22:22890416-22890669(-)$1	253	160	185	23.2170
gggg[bbtttttttttttbb]gggg	chr16:31202319-31202532(+)$1	213	153	178	22.2654
:eeeeevvvvvvvvvvvvveeeee:	chr17:61895006-61895232(+)$1	226	37	62	20.8407
eeeeewwwwwwwwwwwwwweeeee]	chr17:29220503-29220778(+)$1	275	73	98	21.3066
ccceeeeettttttttttteeeee]	chr11:66372884-66373132(+)$1	248	73	98	22.2104
Dfffffftttttttttttffffffd	chr20:60963410-60963640(+)$1	230	21	46	21.1216
"""ddddtttttttttttdddd555	chr1:153617492-153617770(+)$1	278	173	198	19.7470
d:fffffftttttttttttffffff	chr2:74689755-74690006(-)$1	251	68	93	21.0275
ee[ddddtttttttttttdddd]ee	chr2:217069809-217070083(+)$1	274	78	103	22.3723
:ffffffuuuuuuuuuuuuffffff	chr18:9124771-9125016(+)$1	245	18	43	22.4070
ffffffyyyyyyyyyyyyyyyyfff	chrM:8372-8595(+)$1	223	15	40	21.2749
[ffffffyyyyyyyyyyyyyyyyff	chr19:1010677-1010916(-)$1	239	137	162	20.7866
ffffff[attttttttttta]ffff	chr1:11127952-11128241(-)$1	289	258	283	22.8171
ffffffyyyyyyyyyyyyyyyyfff	chrM:8350-8572(+)$1	222	37	62	21.2749
==[ddddtttttttttttdddd]==	chr7:54819923-54820214(-)$1	291	96	121	22.3027
###bbwwwwwwwwwwwwwwbb333c	chr1:226032902-226033157(-)$1	255	201	226	20.1368
::eeeeevvvvvvvvvvvvveeeee	chr17:1680579-1680894(+)$1	315	56	81	20.6023
eefffffftttttttttttffffff	chr17:40024016-40024251(-)$1	235	74	99	22.1854
ffffffyyyyyyyyyyyyyyyyfff	chrX:55035603-55035877(-)$1	274	49	74	21.2749
gggg[bbtttttttttttbb]gggg	chr16:31202187-31202519(+)$1	332	285	310	22.2654
hh[dddduuuuuuuuuuuudddd]h	chr17:34171868-34172124(+)$1	256	174	199	22.0229
fffffwwwwwwwwwwwwwwffffff	chrM:10240-10456(+)$1	216	76	101	21.0358
eeeddddtttttttttttdddd22e	chr16:31202619-31202840(+)$1	221	125	150	21.7477
ffffffxxxxxxxxxxxxxxxffff	chr6:31498582-31498804(-)$1	222	79	104	16.5211
eeeeettttttttttteeeee22bb	chr5:130494930-130495392(-)$1	462	36	61	16.8124
)))ddddtttttttttttdddd000	chr12:57106188-57106437(-)$1	249	66	91	19.6247
"""ddddtttttttttttdddd444	chr22:22890955-22891165(-)$1	210	78	103	22.0958
$eeeeevvvvvvvvvvvvveeeee2	chr2:58386390-58386652(-)$1	262	131	156	22.2657
===ddddvvvvvvvvvvvvvdddd7	chr15:40512663-40512916(+)$1	253	209	234	21.3858
""eeeeeuuuuuuuuuuuueeeee]	chrM:10166-10427(+)$1	261	133	158	23.4023
a[cccwwwwwwwwwwwwwwccc]a3	chr4:17838677-17838917(+)$1	240	15	40	21.1531
ee"""bbvvvvvvvvvvvvvbb]ee	chrM:10136-10340(+)$1	204	40	65	21.8006
eeeeebbuuuuuuuuuuuubb]eee	chr6:137519281-137519589(-)$1	308	238	263	22.9862
egggggggtttttttttttgggggg	chr6:30893802-30894046(+)$1	244	77	102	21.8820
eeee[bbuuuuuuuuuuuubb22ee	chr2:176042865-176043145(-)$1	280	98	123	22.8484
ccceeeeettttttttttteeeee]	chr11:66372932-66373163(+)$1	231	25	50	22.2104
:ddddbbtttttttttttbb]dddd	chr21:35275689-35275945(-)$1	256	154	179	20.4999
gggg:bbuuuuuuuuuuuubb:::d	chr1:249144369-249144718(-)$1	349	147	172	18.7991
eebb[avvvvvvvvvvvvva]bb]e	chr19:34890703-34890930(+)$1	227	33	58	21.4956
ff"""ccctttttttttttccc]ff	chr22:22892047-22892279(-)$1	232	82	107	22.4434
:ddddbbtttttttttttbb]dddd	chr21:35275745-35275997(-)$1	252	206	231	20.4999

#otherMatches

#Seq PSSM
UCAUCUGAACCAUUUCUAUAACAAU	chr13:111545406-111545669(-)$1	263	152	177	20.5562
AACCUCUCCAGUUCCCCAGGAGGUC	chrX:151123014-151123279(-)$1	265	131	156	21.5787
GCCAGUUUAAGUAAUCAGAAGGCUG	chr17:61895032-61895257(+)$1	225	48	73	21.7699
GGUGGUGGAAGAGUUGAAGAAGUAC	chr11:57509565-57509820(+)$1	255	90	115	21.5585
GACUCAGAAAUUAGGCAGAUUGAGU	chr18:214588-214898(-)$1	310	84	109	23.2812
ACCUGUGCUUAUGGCUCUUGCGGAG	chr19:59060610-59060862(+)$1	252	149	174	22.6782
AGGCUGCCCCUCACCCCCAGGCUGC	chr11:294279-294550(+)$1	271	237	262	22.1240
CUGCCAACCUCUCCUCUGCUGGCAG	chr1:52254820-52255067(-)$1	247	55	80	22.4542
UCUGAGCUAAGAAACUGAAAGCCAG	chr17:26904632-26904890(-)$1	258	164	189	22.8315
UGCGCAUUGGCGAGAAAUAUGUUGA	chr21:35275797-35276047(-)$1	250	135	160	21.7765
AAGUUGCAUAGUAUAGUUUUGCCAU	chr1:76260186-76260427(+)$1	241	163	188	23.0043
CAAGGCCAAAGGCAAAUUCAAGGCC	chr3:9876866-9877156(+)$1	290	8	33	20.4316
AUGCUUUAUUUAUAUAUAGGAAGUU	chr18:9126751-9127006(+)$1	255	156	181	21.4262
ACAACUAACCUGCCACUAAUAGUUA	chrM:10150-10366(+)$1	216	149	174	23.4023
AUAACAUUAAAAAAUGCUUAUGUUA	chr2:166801931-166802242(-)$1	311	235	260	22.7239
CCCUGUUUCAUGCCUAACUAGCUGG	chr22:22890416-22890669(-)$1	253	160	185	23.2170
AGAGGCCAUAGGAUAACAGGGUUUU	chr16:31202319-31202532(+)$1	213	153	178	22.2654
UCUCUUUCAGUCACAGUACAAGAGU	chr17:61895006-61895232(+)$1	226	37	62	20.8407
CAUUGGUAAUAUUAGAUGAUAGUGA	chr17:29220503-29220778(+)$1	275	73	98	21.3066
AGGUGUGGGAUGUGAUUGGCCGCAG	chr11:66372884-66373132(+)$1	248	73	98	22.2104
GGCUCACAUUUGGGCAGAGUGAGUG	chr20:60963410-60963640(+)$1	230	21	46	21.1216
AUAUGUCGAAAACAAAAGGACACCU	chr1:153617492-153617770(+)$1	278	173	198	19.7470
GAAAAUUCCCAUUUCCAUAGAGUUU	chr2:74689755-74690006(-)$1	251	68	93	21.0275
AAGUGUGUUGUUCUUGUUCACAGUU	chr2:217069809-217070083(+)$1	274	78	103	22.3723
auaaaaauucuuuuuuuuuuuuuua	chr18:9124771-9125016(+)$1	245	18	43	22.4070
GUAUGGCCCACCAUAAUUACCCCCA	chrM:8372-8595(+)$1	223	15	40	21.2749
UGCCCGAUGACAUGAACAACAACUC	chr19:1010677-1010916(-)$1	239	137	162	20.7866
UGGGGAGCGAGUGUCCAGGGGUCUU	chr1:11127952-11128241(-)$1	289	258	283	22.8171
GUAUGGCCCACCAUAAUUACCCCCA	chrM:8350-8572(+)$1	222	37	62	21.2749
UACAGUGGUGGCUGAAUACAUUUUG	chr7:54819923-54820214(-)$1	291	96	121	22.3027
UGUAGGAAUAGGAGAUGAGCUUUGG	chr1:226032902-226033157(-)$1	255	201	226	20.1368
CCGCUGGACUAUCACCUUAACCAGC	chr17:1680579-1680894(+)$1	315	56	81	20.6023
AUGUGUUUGCUUCAUUUUAGGACAC	chr17:40024016-40024251(-)$1	235	74	99	22.1854
GGAAGAUCUAGUCUAACCCAUUUUU	chrX:55035603-55035877(-)$1	274	49	74	21.2749
AGAGGCCAUAGGAUAACAGGGUUUU	chr16:31202187-31202519(+)$1	332	285	310	22.2654
GUGAGUAUUAGAAUGUGUUUAUUAA	chr17:34171868-34172124(+)$1	256	174	199	22.0229
AAUAGUUAUGUCAUCCCUCUUAUUA	chrM:10240-10456(+)$1	216	76	101	21.0358
GAGAGGCCGUAUUAAUUAGCCUGGC	chr16:31202619-31202840(+)$1	221	125	150	21.7477
GCUACCCUCUGUCUCCCUCCAGGUG	chr6:31498582-31498804(-)$1	222	79	104	16.5211
GGCAAGAAGUAAUAAAUUGCCUGUG	chr5:130494930-130495392(-)$1	462	36	61	16.8124
UAUAAGAACCGCUAAUUAUCUUUUC	chr12:57106188-57106437(-)$1	249	66	91	19.6247
UAACUGCUUUGUCUAUUUGCAGGCA	chr22:22890955-22891165(-)$1	210	78	103	22.0958
UGAGACUCUUGAUAUUUCUGUCUUC	chr2:58386390-58386652(-)$1	262	131	156	22.2657
UUUUGACACUACAUUCCAAAGUCAC	chr15:40512663-40512916(+)$1	253	209	234	21.3858
ACAACUAACCUGCCACUAAUAGUUA	chrM:10166-10427(+)$1	261	133	158	23.4023
CGUGUAAAAAUACUGUAGGACAGGC	chr4:17838677-17838917(+)$1	240	15	40	21.1531
GGCUUCGACCCUAUAUCCCCCGCCC	chrM:10136-10340(+)$1	204	40	65	21.8006
AUUUCCCCCAAAUAAUAAAGGUGAA	chr6:137519281-137519589(-)$1	308	238	263	22.9862
GUCCAGCUUUCUUCCCUCCAGCUGG	chr6:30893802-30894046(+)$1	244	77	102	21.8820
UGGUUGCUUUCUUGAUUUUGUUUGC	chr2:176042865-176043145(-)$1	280	98	123	22.8484
AGGUGUGGGAUGUGAUUGGCCGCAG	chr11:66372932-66373163(+)$1	231	25	50	22.2104
UUGGAGCAACAAUAAAAAGCUUCCA	chr21:35275689-35275945(-)$1	256	154	179	20.4999
CCGUAGCAAAAGUCACCCAGCCCUG	chr1:249144369-249144718(-)$1	349	147	172	18.7991
UCAGGGAUUUCAGUAGCAACGUUAG	chr19:34890703-34890930(+)$1	227	33	58	21.4956
UAUGUGGACUCUUUAUUUUUCCUUA	chr22:22892047-22892279(-)$1	232	82	107	22.4434
UUGGAGCAACAAUAAAAAGCUUCCA	chr21:35275745-35275997(-)$1	252	206	231	20.4999

#DB
((((.((..............))))	chr13:111545406-111545669(-)$1	1	152	177	20.5562
)((((((...........))))))(	chrX:151123014-151123279(-)$1	1	131	156	21.5787
((((((((...........))))))	chr17:61895032-61895257(+)$1	1	48	73	21.7699
((((.(..............).)))	chr11:57509565-57509820(+)$1	1	90	115	21.5585
.((((((............))))))	chr18:214588-214898(-)$1	1	84	109	23.2812
.(((.(((...........))).))	chr19:59060610-59060862(+)$1	1	149	174	22.6782
((((.(((...........))).))	chr11:294279-294550(+)$1	1	237	262	22.1240
((((((.............))))))	chr1:52254820-52255067(-)$1	1	55	80	22.4542
((((.(((...........))))))	chr17:26904632-26904890(-)$1	1	164	189	22.8315
(..((((...........))))..)	chr21:35275797-35276047(-)$1	1	135	160	21.7765
((((.(((...........))).))	chr1:76260186-76260427(+)$1	1	163	188	23.0043
(..((((..............))))	chr3:9876866-9877156(+)$1	1	8	33	20.4316
..(((((............))))).	chr18:9126751-9127006(+)$1	1	156	181	21.4262
..(((((............))))).	chrM:10150-10366(+)$1	1	149	174	23.4023
(((((((............))))))	chr2:166801931-166802242(-)$1	1	235	260	22.7239
(((.(((............))).))	chr22:22890416-22890669(-)$1	1	160	185	23.2170
((((.((...........)).))))	chr16:31202319-31202532(+)$1	1	153	178	22.2654
.(((((.............))))).	chr17:61895006-61895232(+)$1	1	37	62	20.8407
(((((..............))))).	chr17:29220503-29220778(+)$1	1	73	98	21.3066
((((((((...........))))).	chr11:66372884-66373132(+)$1	1	73	98	22.2104
(((((((...........))))))(	chr20:60963410-60963640(+)$1	1	21	46	21.1216
...((((...........))))...	chr1:153617492-153617770(+)$1	1	173	198	19.7470
).((((((...........))))))	chr2:74689755-74690006(-)$1	1	68	93	21.0275
((.((((...........)))).))	chr2:217069809-217070083(+)$1	1	78	103	22.3723
.((((((............))))))	chr18:9124771-9125016(+)$1	1	18	43	22.4070
((((((................)))	chrM:8372-8595(+)$1	1	15	40	21.2749
.((((((................))	chr19:1010677-1010916(-)$1	1	137	162	20.7866
((((((.(...........).))))	chr1:11127952-11128241(-)$1	1	258	283	22.8171
((((((................)))	chrM:8350-8572(+)$1	1	37	62	21.2749
((.((((...........)))).))	chr7:54819923-54820214(-)$1	1	96	121	22.3027
...((..............))...)	chr1:226032902-226033157(-)$1	1	201	226	20.1368
..(((((.............)))))	chr17:1680579-1680894(+)$1	1	56	81	20.6023
((((((((...........))))))	chr17:40024016-40024251(-)$1	1	74	99	22.1854
((((((................)))	chrX:55035603-55035877(-)$1	1	49	74	21.2749
((((.((...........)).))))	chr16:31202187-31202519(+)$1	1	285	310	22.2654
((.((((............)))).)	chr17:34171868-34172124(+)$1	1	174	199	22.0229
(((((..............))))))	chrM:10240-10456(+)$1	1	76	101	21.0358
(((((((...........))))..)	chr16:31202619-31202840(+)$1	1	125	150	21.7477
((((((...............))))	chr6:31498582-31498804(-)$1	1	79	104	16.5211
(((((...........)))))..))	chr5:130494930-130495392(-)$1	1	36	61	16.8124
...((((...........))))...	chr12:57106188-57106437(-)$1	1	66	91	19.6247
...((((...........))))...	chr22:22890955-22891165(-)$1	1	78	103	22.0958
.(((((.............))))).	chr2:58386390-58386652(-)$1	1	131	156	22.2657
(((((((.............)))).	chr15:40512663-40512916(+)$1	1	209	234	21.3858
..(((((............))))).	chrM:10166-10427(+)$1	1	133	158	23.4023
(.(((..............))).).	chr4:17838677-17838917(+)$1	1	15	40	21.1531
((...((.............)).))	chrM:10136-10340(+)$1	1	40	65	21.8006
(((((((............)).)))	chr6:137519281-137519589(-)$1	1	238	263	22.9862
)(((((((...........))))))	chr6:30893802-30894046(+)$1	1	77	102	21.8820
((((.((............))..))	chr2:176042865-176043145(-)$1	1	98	123	22.8484
((((((((...........))))).	chr11:66372932-66373163(+)$1	1	25	50	22.2104
.((((((...........)).))))	chr21:35275689-35275945(-)$1	1	154	179	20.4999
)))).((............))...(	chr1:249144369-249144718(-)$1	1	147	172	18.7991
((((.(.............).)).)	chr19:34890703-34890930(+)$1	1	33	58	21.4956
((...(((...........))).))	chr22:22892047-22892279(-)$1	1	82	107	22.4434
.((((((...........)).))))	chr21:35275745-35275997(-)$1	1	206	231	20.4999

#PSSM
e : 0.23	f : 0.16	: : 0.08	d : 0.07	c : 0.07	" : 0.07	g : 0.05	[ : 0.03	= : 0.03	H : 0.01	! : 0.01	% : 0.01	i : 0.01	D : 0.01	# : 0.01	h : 0.01	) : 0.01	$ : 0.01	a : 0.01	
f : 0.24	e : 0.24	g : 0.08	c : 0.07	" : 0.07	d : 0.05	! : 0.03	: : 0.03	= : 0.03	% : 0.01	i : 0.01	# : 0.01	h : 0.01	) : 0.01	[ : 0.01	
f : 0.26	e : 0.24	g : 0.08	c : 0.08	" : 0.07	d : 0.05	[ : 0.05	! : 0.03	i : 0.01	# : 0.01	) : 0.01	= : 0.01	b : 0.01	
f : 0.26	e : 0.26	d : 0.23	g : 0.08	c : 0.03	b : 0.03	" : 0.03	i : 0.01	[ : 0.01	
f : 0.24	d : 0.21	e : 0.19	[ : 0.17	g : 0.03	c : 0.03	" : 0.03	i : 0.01	b : 0.01	: : 0.01	
f : 0.23	d : 0.17	b : 0.16	e : 0.14	c : 0.10	w : 0.07	g : 0.03	a : 0.03	i : 0.01	t : 0.01	
d : 0.17	b : 0.16	f : 0.12	c : 0.10	e : 0.10	w : 0.08	v : 0.07	y : 0.05	g : 0.03	i : 0.01	[ : 0.01	x : 0.01	t : 0.01	
t : 0.24	u : 0.19	w : 0.12	v : 0.12	c : 0.08	y : 0.07	g : 0.03	e : 0.03	f : 0.03	a : 0.01	x : 0.01	
t : 0.46	u : 0.19	w : 0.12	v : 0.12	y : 0.07	x : 0.01	
t : 0.46	u : 0.19	w : 0.12	v : 0.12	y : 0.07	x : 0.01	
t : 0.46	u : 0.19	w : 0.12	v : 0.12	y : 0.07	x : 0.01	
t : 0.46	u : 0.19	w : 0.12	v : 0.12	y : 0.07	x : 0.01	
t : 0.46	u : 0.19	w : 0.12	v : 0.12	y : 0.07	x : 0.01	
t : 0.46	u : 0.19	w : 0.12	v : 0.12	y : 0.07	x : 0.01	
t : 0.46	u : 0.19	w : 0.12	v : 0.12	y : 0.07	x : 0.01	
t : 0.46	u : 0.19	w : 0.12	v : 0.12	y : 0.07	x : 0.01	
t : 0.44	u : 0.19	w : 0.12	v : 0.12	y : 0.07	x : 0.01	e : 0.01	
t : 0.44	u : 0.19	w : 0.12	v : 0.12	y : 0.07	x : 0.01	e : 0.01	
t : 0.21	u : 0.19	w : 0.12	v : 0.12	d : 0.12	b : 0.07	y : 0.07	f : 0.03	x : 0.01	e : 0.01	
e : 0.16	f : 0.14	d : 0.14	b : 0.14	c : 0.12	y : 0.07	w : 0.05	v : 0.05	g : 0.03	a : 0.03	i : 0.01	x : 0.01	
e : 0.17	d : 0.16	f : 0.14	c : 0.12	] : 0.10	b : 0.08	y : 0.07	w : 0.03	g : 0.03	a : 0.01	i : 0.01	x : 0.01	
d : 0.21	f : 0.17	e : 0.16	c : 0.12	g : 0.07	y : 0.07	b : 0.05	] : 0.03	2 : 0.03	i : 0.01	3 : 0.01	: : 0.01	
f : 0.23	e : 0.21	] : 0.16	d : 0.08	g : 0.07	2 : 0.07	b : 0.03	i : 0.01	5 : 0.01	y : 0.01	3 : 0.01	0 : 0.01	4 : 0.01	: : 0.01	
f : 0.28	e : 0.28	d : 0.08	g : 0.07	c : 0.03	2 : 0.03	] : 0.03	i : 0.01	5 : 0.01	= : 0.01	3 : 0.01	b : 0.01	0 : 0.01	4 : 0.01	a : 0.01	: : 0.01	
f : 0.24	e : 0.17	d : 0.12	] : 0.08	g : 0.07	c : 0.07	5 : 0.03	i : 0.01	: : 0.01	= : 0.01	h : 0.01	b : 0.01	0 : 0.01	4 : 0.01	2 : 0.01	7 : 0.01	3 : 0.01	

#score	1206.5688674701232
#seq	56
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_UTR_m1_run1.txt

#BEAR
hhhhhhh[bb!!ddddoooooodddd22bb22hhhhhhh	chr14:78227256-78227525(-)$1	269	22	61	9.8276
ddd####ddddccc[ddddllldddd22ccc]dddd444	chr5:73935956-73936171(-)$1	215	49	88	13.8706
!eeeee!!dddd!!cccoooooocccdddd]eeeeeccc	chr15:78591704-78591975(-)$1	271	165	204	11.3689
:iiiiiiiii[a!!ddddmmmmdddd22aiiiiiiiiie	chr8:38644623-38644919(+)$1	296	77	116	14.7281
ccc####eeeee!!ddddmmmmddddeeeeecccfffff	chr15:75198735-75199000(-)$1	265	139	178	13.1386
e[a[eeeee!!bbddddnnnnndddd333bb]eeeeea]	chr17:79650377-79650642(-)$1	265	13	52	12.8386
ee[ccc[ccc[eeeee[annnnna]eeeeeccc]ccc]e	chr12:125398932-125399190(-)$1	258	69	108	10.7270
eeeeebb[ccc[a!!cccnnnnnccc22a]cccbbbb!!	chr19:48983265-48983513(+)$1	248	174	213	10.4920
dddd!!ggggggg[ddddnnnnndddd]ggggggg333d	chr16:4736233-4736481(+)$1	248	80	119	12.7834
dddddd!!ccc"""ddddmmmmddddccc]dddd]dddd	chr9:140346801-140347073(-)$1	272	42	81	13.3486
eeeeeee[bb[ccc[cccmmmmccccccbbeeeeeffff	chr19:18468345-18468603(+)$1	258	92	131	10.3103
##bb[ggggggg!!abbnnnnnbb]a4444ggggggg]b	chr14:103800511-103800774(+)$1	263	95	134	10.7031
###dddd[bb####ddddmmmmddddbbdddd22dddd2	chr9:74979409-74979681(-)$1	272	46	85	11.5825
bb[ggggggg[a[cccooooooccca]ggggggg]bb]c	chr20:62331815-62332026(-)$1	211	130	169	11.3832
==========eeeee[bbmmmmbb]eeeee22=======	chr7:150020569-150020829(+)$1	260	15	54	10.2056
nddddcccdddd!!ddddmmmmdddd]dddd]ccceeee	chr2:233415370-233415680(+)$1	310	170	209	12.3108
:::eeeee[ccc"""ddddllldddd22ccceeeee:a[	chr17:74732713-74732977(-)$1	264	163	202	10.9206
ddd[eeeeebb####cccmmmmccc333bb]eeeee]dd	chr17:1945102-1945358(+)$1	256	51	90	12.5310
ee[eeeeebb[bbddddnnnnndddd]bb]bb4444eee	chr3:50137412-50137671(+)$1	259	64	103	10.6179
"eeeee[ccc[a!!ddddmmmmdddd22a]ccceeeeec	chr1:1019547-1019802(-)$1	255	90	129	15.2230
ggg[bb[ffffff[ddddmmmmdddd]ffffff]bb444	chr3:5229939-5230192(+)$1	253	111	150	11.8873
d"""ccc[bbeeeeeddddllldddd]eeeee22bb]cc	chr4:1229684-1229928(-)$1	244	27	66	12.4100
ffffff[cccccc[ddddlllddddccc]ccc]ffffff	chr17:37009762-37010014(-)$1	252	83	122	11.9646
bbmmmmbbeeeee!!ddddllldddd22eeeeegggggg	chr20:48759844-48760142(-)$1	298	139	178	10.4165
ccc!!dddd[bbbb[ddddllldddd]bb]bb]ddddcc	chr2:9770836-9771120(-)$1	284	230	269	11.1154
ddd!!eeeee"""eeeeemmmmeeeee22eeeee22ddd	chr1:46073462-46073734(+)$1	272	188	227	11.4064
eeee[iiiiiiiii[ddddllldddd]iiiiiiiii]ee	chr2:163200709-163200979(+)$1	270	186	225	13.9856
Heeeee[eeeee!!ddddmmmmdddd]eeeee666666e	chr11:61595999-61596241(+)$1	242	14	53	10.4997
ddd!!eeeee[a"""bboooooobb333a]eeeee22dd	chr10:12212541-12212787(-)$1	246	30	69	11.7275
"eeeee[dddd!!ccc[bblllbbcccdddd]eeeee22	chr8:48920954-48921219(+)$1	265	83	122	10.0373
[a[ccc[ccc[bb[ddddllldddd]bb]ccc]ccc]a]	chr6:74230519-74230780(-)$1	261	140	179	12.7261
###ccc[ccc[ffffffmmmmffffff333cccccc444	chr18:47018513-47018766(-)$1	253	52	91	9.6777
$$$$ddddoooooodddd4444dddd22iiiiiiiii22	chr2:198284954-198285207(-)$1	253	65	104	10.0015
ffffff[eeeee"""cccmmmmccceeeeeffffff:ee	chr16:2014635-2014885(-)$1	250	129	168	10.3210
ffffff[dddd"""ddddllldddd4444dddd]fffff	chr3:10362417-10362630(-)$1	213	141	180	12.6895
""ffffff[ccc[eeeeemmmmeeeeeccc]ffffff22	chr12:107168551-107168822(+)$1	271	65	104	10.5045
gg$$$$$eeeee"""cccnnnnnccc22eeeeegggggg	chr4:761194-761426(-)$1	232	103	142	11.6827
ccc!!hhhhhhhh"""ccclllccc22hhhhhhhh333c	chr9:97842981-97843250(+)$1	269	4	43	10.8009
f:ffffffa[ccc[ddddllldddd]ccc]a22ffffff	chr16:2317880-2318129(-)$1	249	101	140	10.2210
e[dddd!!bb!!ddddoooooodddd22bb22dddd]ee	chr16:28875088-28875354(+)$1	266	108	147	12.0419
=[a[hhhhhhhh[aeeeeellleeeee]a333hhhhhhh	chr17:8339279-8339548(+)$1	269	150	189	10.7176
###ccc"""ccc[ddddnnnnnddddccc22ccc]eeee	chr1:53373359-53373607(-)$1	248	41	80	12.5071
ddd####ddddccc[ddddllldddd22ccc]dddd444	chr5:73935971-73936197(-)$1	226	75	114	13.8706
ee[ccc[ccc[eeeee[annnnna]eeeeeccc]ccc]e	chr12:125398990-125399203(-)$1	213	82	121	10.7270
a[ccceeeee"""ddddnnnnndddd333eeeee4444c	chr14:21462984-21463230(+)$1	246	106	145	14.1554
hhh!!ccceeeee!!cccmmmmccc22eeeee]ccc22h	chr17:79082235-79082485(+)$1	250	63	102	11.3257
$$$$dddd[ccc[ddddnnnnndddd333ccc]dddd55	chr9:135930356-135930614(+)$1	258	189	228	11.5100
ddggggggg[bb####ccclllccc333bbggggggg:E	chr2:182757286-182757556(+)$1	270	147	186	10.5719
======"""dddd[ddddllldddddddd==========	chr22:36924937-36925194(-)$1	257	105	144	13.2952
:bbiiiiiiiii[eeeeemmmmeeeeeiiiiiiiii]bb	chr1:193028837-193029097(+)$1	260	3	42	10.4481
iiiiiii!!cccddddoooooodddd22ccc4444iiii	chr3:42678469-42678741(+)$1	272	146	185	13.4125
d"""bb!!ccc!!eeeeemmmmeeeee]ccc22bbdddd	chr20:34319691-34319936(-)$1	245	65	104	11.4895
ddd####ddddccc[ddddllldddd22ccc]dddd444	chr5:73935997-73936202(-)$1	205	80	119	13.8706
a"""ggggggg####cccmmmmcccggggggg333accc	chr9:140347996-140348250(-)$1	254	105	144	13.1204
ddd[ccc"""bb"""ccclllccc]bb333ccc]dddd:	chr17:17720834-17721085(-)$1	251	109	148	10.6111
d"""eeeee[a"""ddddmmmmdddd55555a]eeeee2	chr9:19380003-19380261(-)$1	258	144	183	10.8415
b[dddd!!dddd"""cccmmmmcccdddd]ddddbb]dd	chr3:10362382-10362617(-)$1	235	30	69	11.4097
ffffffeeeee!!eeeeemmmmeeeee]eeeee>>>>>>	chr17:72860095-72860339(-)$1	244	40	79	10.0127
=[a[hhhhhhhh[aeeeeellleeeee]a333hhhhhhh	chr17:8339412-8339669(+)$1	257	17	56	10.7176

#otherMatches

#Seq PSSM
UGCUGUCGCUCGCGCUGGAAGAAGCGGAAGAAGAUGGCG	chr14:78227256-78227525(-)$1	269	22	61	9.8276
CCCCACUGCCCCGGACCUGUUGCAGGCGCUGCGGGCUUC	chr5:73935956-73936171(-)$1	215	49	88	13.8706
UGCCUGUAAGCAGGUCCGUUCAGGGAUGCUCCAGGCCCU	chr15:78591704-78591975(-)$1	271	165	204	11.3689
CUGGGGCGCGGCUCCGGCGGCAGCUGAUGCGCGCCCCGC	chr8:38644623-38644919(+)$1	296	77	116	14.7281
UCCGGAGCUCCGCUGGGCCUCGGCCCCGGAGGGAAGGGG	chr15:75198735-75199000(-)$1	265	139	178	13.1386
CGCACAGGUGAGCUCCCGGGAUGGGAAAGGCGACCUGGG	chr17:79650377-79650642(-)$1	265	13	52	12.8386
GCUGCUGGGCUGGCCGGGGCUUUCGUGGCCGCCGGGCCG	chr12:125398932-125399190(-)$1	258	69	108	10.7270
CAAGGGCUCGUGGAUCCCGAGCAGGGUGCGAUGGCGGAU	chr19:48983265-48983513(+)$1	248	174	213	10.4920
CUCCCAGACGCGCUUCGGGGGCUCUGACGCGCGUCCUUG	chr16:4736233-4736481(+)$1	248	80	119	12.7834
AGCACGCAACCUUCGAGGACAUCCUUGGUAUGUGCCUCA	chr9:140346801-140347073(-)$1	272	42	81	13.3486
GGGGUGGGAGUGAGUGGGGAUUUCCCUCCUCCACCCACU	chr19:18468345-18468603(+)$1	258	92	131	10.3103
GUGAAGGGGCGGCCCCCUGCCCGGUGCUUCCCGCCCCCU	chr14:103800511-103800774(+)$1	263	95	134	10.7031
CUUUCGCAUUUGGGACCCUGCAGGGUGAGUGAUACGGGG	chr9:74979409-74979681(-)$1	272	46	85	11.5825
CGCUGUCUUCACAGCAAAGGGGUGCGCGAGGGCAUCGAG	chr20:62331815-62332026(-)$1	211	130	169	11.3832
GCGGAGUUGCGCCGGACUUCCCAGCUUGGCCAGUGGCUC	chr7:150020569-150020829(+)$1	260	15	54	10.2056
CUGCGGCACCGGCUUCCCUGCUGGGAUCCGGCUGCGGCC	chr2:233415370-233415680(+)$1	310	170	209	12.3108
AAGGUCCGCGGCGAAGCACGUGGUGCGGGCCCGGACGGG	chr17:74732713-74732977(-)$1	264	163	202	10.9206
CGCUCCCGGGCCUCAGGUAUCAGCCCCCGCUCUGGGUGC	chr17:1945102-1945358(+)$1	256	51	90	12.5310
GAAAACAGGUGAGAGCUUGCUUAGUUCCUGAUAUUAUUG	chr3:50137412-50137671(+)$1	259	64	103	10.6179
CCCCUGUGGGGUUUCCCAUCUCUGGGCCAGUCCCAGGGU	chr1:1019547-1019802(-)$1	255	90	129	15.2230
CUCCGCGCCGGGGUGCAGCCCUCUGUCCUCCGGGGCCCC	chr3:5229939-5230192(+)$1	253	111	150	11.8873
CUGGGGUGUUGGCUGUUCUGGAAGAAGUAGCUGAGAGGC	chr4:1229684-1229928(-)$1	244	27	66	12.4100
GGAUCCUCCACCAUCUGUCGUGCAGUGGCUGGCGGAUUC	chr17:37009762-37010014(-)$1	252	83	122	11.9646
CCCUAGGGGCCAGGGACCCACCGGGUAACUGGCGCGUGU	chr20:48759844-48760142(-)$1	298	139	178	10.4165
ggagcggccgcggcucgggcucccugcgcgcggggccuc	chr2:9770836-9771120(-)$1	284	230	269	11.1154
UGUAGAGGCUGGAUCAGAAGUCUCUGAAAAGCCUGGGCA	chr1:46073462-46073734(+)$1	272	188	227	11.4064
UGGUACUCGGCGGCGCCGGAUUCCGGGGCUGUUGGGGGC	chr2:163200709-163200979(+)$1	270	186	225	13.9856
UCCAGCACCCGGGGGGCCAGCGGGUCAUCGGGCACUACG	chr11:61595999-61596241(+)$1	242	14	53	10.4997
UCAUUUCUUUACCCAAGAAUGACCUGCUGCAGAGACUUG	chr10:12212541-12212787(-)$1	246	30	69	11.7275
CCCGGGCCGGGCUGCGUGAUUUUCCGCUCCGACCCGGCU	chr8:48920954-48921219(+)$1	265	83	122	10.0373
UGGCUGCAGUACGUGAUUCUUGAUCCCGAGCUUCGGGUU	chr6:74230519-74230780(-)$1	261	140	179	12.7261
AAAUCCUCGCUGGAGGCGGUGGCUUCUUAUGCGGGAGGA	chr18:47018513-47018766(-)$1	253	52	91	9.6777
UCCCACUUUUCUAUAAGUAUUCAGAAAUUUAUUUGUAUU	chr2:198284954-198285207(-)$1	253	65	104	10.0015
GCGGACAUCGGGUCGGGUCUAGGCUCCCGAGUCCGCGCU	chr16:2014635-2014885(-)$1	250	129	168	10.3210
UUCCUUCUUUUCGGUCAACAAUUGAAAACAAAACGAGGA	chr3:10362417-10362630(-)$1	213	141	180	12.6895
CCUGGCCCCGGGCGUGCGGUAUCGCACCCCCGGGCCGCC	chr12:107168551-107168822(+)$1	271	65	104	10.5045
UUGGCUUCUUGGAAAGCCUGAAUGGUGGCCAAGGACCAC	chr4:761194-761426(-)$1	232	103	142	11.6827
GGUGGUGUGAACUCAUUGUUAAGCACAAGUUCACGAAAG	chr9:97842981-97843250(+)$1	269	4	43	10.8009
CCGUGUUUCGGGGGCUGCCCGGCAGGCCCGGCAGGACGC	chr16:2317880-2318129(-)$1	249	101	140	10.2210
GGGGCGCAGGGAGCGGGAgccgccgccgccgccgccgcc	chr16:28875088-28875354(+)$1	266	108	147	12.0419
UUGGGGAGCCUUCCCGGCCCGGGGCCGUGUCUGAGGCUc	chr17:8339279-8339548(+)$1	269	150	189	10.7176
GACUCCGGGGCCUGAUGAAUGACAUCGGUGAGGAUCUGG	chr1:53373359-53373607(-)$1	248	41	80	12.5071
CCCCACUGCCCCGGACCUGUUGCAGGCGCUGCGGGCUUC	chr5:73935971-73936197(-)$1	226	75	114	13.8706
GCUGCUGGGCUGGCCGGGGCUUUCGUGGCCGCCGGGCCG	chr12:125398990-125399203(-)$1	213	82	121	10.7270
CUUGAAGCAGCUUCAUGGAUUUCAUGCCUUUGCUCCUCU	chr14:21462984-21463230(+)$1	246	106	145	14.1554
UCCAUGAGCAGGUAAGGGGACUUUCAGACCUGUCUUUGG	chr17:79082235-79082485(+)$1	250	63	102	11.3257
CAGAGCCAGAGCAGGCCAUGUGGGCUGCAGCUGUGGCAG	chr9:135930356-135930614(+)$1	258	189	228	11.5100
ACGGGACGCCGGAGCAGAGCCACUCGGGCCGCGUCCCUG	chr2:182757286-182757556(+)$1	270	147	186	10.5719
UCCGGAGCCGGUUCGGACUAGGUCCAGCCUUCGGGGGGC	chr22:36924937-36925194(-)$1	257	105	144	13.2952
UCCCAGCGCUGCGCAGGACUUCUCCUGGCGGCGCUGCGG	chr1:193028837-193029097(+)$1	260	3	42	10.4481
AGAAUGAAAUCCUCUUGUGAUAGAGAAAGGAGUUCUCGU	chr3:42678469-42678741(+)$1	272	146	185	13.4125
AAGUCCUUAGUAUGUAACUAUAGUUAUGAUUUUGGUUUG	chr20:34319691-34319936(-)$1	245	65	104	11.4895
CCCCACUGCCCCGGACCUGUUGCAGGCGCUGCGGGCUUC	chr5:73935997-73936202(-)$1	205	80	119	13.8706
GCCUCCCCUAGACCCCAGACCCCUGCUGGGGGUCCCCUG	chr9:140347996-140348250(-)$1	254	105	144	13.1204
CCCAGCCAUAUCCUCUGAGCCUCaugacagggccgggaa	chr17:17720834-17721085(-)$1	251	109	148	10.6111
UCAGUUCCAGCACUCCAGGAUCCUGGCUUUAGGUGGAGA	chr9:19380003-19380261(-)$1	258	144	183	10.8415
GUCCUUGCGGACCAUUCCGAGGGGAGUCCAGAGGUGAGG	chr3:10362382-10362617(-)$1	235	30	69	11.4097
GGUGUCCGCCUAGCAGUCACUAGACUGGAGGUGAGUCUC	chr17:72860095-72860339(-)$1	244	40	79	10.0127
UUGGGGAGCCUUCCCGGCCCGGGGCCGUGUCUGAGGCUc	chr17:8339412-8339669(+)$1	257	17	56	10.7176

#DB
(((((((.((..((((......))))..))..)))))))	chr14:78227256-78227525(-)$1	1	22	61	9.8276
(((....(((((((.((((...))))..))).))))...	chr5:73935956-73936171(-)$1	1	49	88	13.8706
.(((((..((((..(((......))))))).))))))))	chr15:78591704-78591975(-)$1	1	165	204	11.3689
.(((((((((.(..((((....))))..))))))))))(	chr8:38644623-38644919(+)$1	1	77	116	14.7281
(((....(((((..((((....))))))))))))(((((	chr15:75198735-75199000(-)$1	1	139	178	13.1386
(.(.(((((..((((((.....))))...)).)))))).	chr17:79650377-79650642(-)$1	1	13	52	12.8386
((.(((.(((.(((((.(.....).)))))))).))).)	chr12:125398932-125399190(-)$1	1	69	108	10.7270
)))))((.(((.(..(((.....)))..).)))))((..	chr19:48983265-48983513(+)$1	1	174	213	10.4920
((((..(((((((.((((.....)))).)))))))...)	chr16:4736233-4736481(+)$1	1	80	119	12.7834
((((((..(((...((((....))))))).)))).))))	chr9:140346801-140347073(-)$1	1	42	81	13.3486
))(((((.((.(((.(((....)))))))))))))((((	chr19:18468345-18468603(+)$1	1	92	131	10.3103
..((.(((((((..(((.....)).)....))))))).)	chr14:103800511-103800774(+)$1	1	95	134	10.7031
...((((.((....((((....))))))))))..)))).	chr9:74979409-74979681(-)$1	1	46	85	11.5825
((.(((((((.(.(((......)))).))))))).)).)	chr20:62331815-62332026(-)$1	1	130	169	11.3832
(((((((((((((((.((....)).)))))..)))))))	chr7:150020569-150020829(+)$1	1	15	54	10.2056
.))))(((((((..((((....)))).)))).)))((((	chr2:233415370-233415680(+)$1	1	170	209	12.3108
...(((((.(((...((((...))))..)))))))).(.	chr17:74732713-74732977(-)$1	1	163	202	10.9206
(((.(((((((....(((....)))...)).))))).))	chr17:1945102-1945358(+)$1	1	51	90	12.5310
((.(((((((.((((((.....)))).)).))....)))	chr3:50137412-50137671(+)$1	1	64	103	10.6179
.(((((.(((.(..((((....))))..).)))))))))	chr1:1019547-1019802(-)$1	1	90	129	15.2230
(((.((.((((((.((((....)))).)))))).))...	chr3:5229939-5230192(+)$1	1	111	150	11.8873
(...(((.(((((((((((...)))).)))))..)).))	chr4:1229684-1229928(-)$1	1	27	66	12.4100
((((((.((((((.((((...))))))).))).))))))	chr17:37009762-37010014(-)$1	1	83	122	11.9646
((....))(((((..((((...))))..)))))((((((	chr20:48759844-48760142(-)$1	1	139	178	10.4165
(((..((((.((((.((((...)))).)).)).))))))	chr2:9770836-9771120(-)$1	1	230	269	11.1154
(((..(((((...(((((....)))))..)))))..)))	chr1:46073462-46073734(+)$1	1	188	227	11.4064
((((.(((((((((.((((...)))).))))))))).))	chr2:163200709-163200979(+)$1	1	186	225	13.9856
((((((.(((((..((((....)))).)))))......)	chr11:61595999-61596241(+)$1	1	14	53	10.4997
(((..(((((.(...((......))...).)))))..))	chr10:12212541-12212787(-)$1	1	30	69	11.7275
.(((((.((((..(((.((...))))))))).)))))..	chr8:48920954-48921219(+)$1	1	83	122	10.0373
.(.(((.(((.((.((((...)))).)).))).))).).	chr6:74230519-74230780(-)$1	1	140	179	12.7261
...(((.(((.((((((....))))))...))))))...	chr18:47018513-47018766(-)$1	1	52	91	9.6777
....((((......))))....))))..)))))))))..	chr2:198284954-198285207(-)$1	1	65	104	10.0015
((((((.(((((...(((....)))))))))))))).((	chr16:2014635-2014885(-)$1	1	129	168	10.3210
((((((.((((...((((...))))....)))).)))))	chr3:10362417-10362630(-)$1	1	141	180	12.6895
..((((((.(((.(((((....)))))))).))))))..	chr12:107168551-107168822(+)$1	1	65	104	10.5045
((.....(((((...(((.....)))..)))))))))))	chr4:761194-761426(-)$1	1	103	142	11.6827
(((..((((((((...(((...)))..))))))))...)	chr9:97842981-97843250(+)$1	1	4	43	10.8009
).(((((((.(((.((((...)))).))).)..))))))	chr16:2317880-2318129(-)$1	1	101	140	10.2210
(.((((..((..((((......))))..))..)))).))	chr16:28875088-28875354(+)$1	1	108	147	12.0419
(.(.((((((((.((((((...))))).)...)))))))	chr17:8339279-8339548(+)$1	1	150	189	10.7176
...(((...(((.((((.....)))))))..))).))))	chr1:53373359-53373607(-)$1	1	41	80	12.5071
(((....(((((((.((((...))))..))).))))...	chr5:73935971-73936197(-)$1	1	75	114	13.8706
((.(((.(((.(((((.(.....).)))))))).))).)	chr12:125398990-125399203(-)$1	1	82	121	10.7270
(.((((((((...((((.....))))...)))))....)	chr14:21462984-21463230(+)$1	1	106	145	14.1554
(((..((((((((..(((....)))..))))).)))..)	chr17:79082235-79082485(+)$1	1	63	102	11.3257
....((((.(((.((((.....))))...))).))))..	chr9:135930356-135930614(+)$1	1	189	228	11.5100
))(((((((.((....(((...)))...))))))))).)	chr2:182757286-182757556(+)$1	1	147	186	10.5719
((((((...((((.((((...))))))))))))))))))	chr22:36924937-36925194(-)$1	1	105	144	13.2952
.(((((((((((.(((((....)))))))))))))).))	chr1:193028837-193029097(+)$1	1	3	42	10.4481
(((((((..(((((((......))))..)))....))))	chr3:42678469-42678741(+)$1	1	146	185	13.4125
(...((..(((..(((((....))))).)))..))))))	chr20:34319691-34319936(-)$1	1	65	104	11.4895
(((....(((((((.((((...))))..))).))))...	chr5:73935997-73936202(-)$1	1	80	119	13.8706
(...(((((((....(((....))))))))))...))))	chr9:140347996-140348250(-)$1	1	105	144	13.1204
(((.(((...((...(((...))).))...))).)))).	chr17:17720834-17721085(-)$1	1	109	148	10.6111
(...(((((.(...((((....)))).....).))))).	chr9:19380003-19380261(-)$1	1	144	183	10.8415
(.((((..((((...(((....))))))).)))))).))	chr3:10362382-10362617(-)$1	1	30	69	11.4097
(((((((((((..(((((....))))).)))))......	chr17:72860095-72860339(-)$1	1	40	79	10.0127
(.(.((((((((.((((((...))))).)...)))))))	chr17:8339412-8339669(+)$1	1	17	56	10.7176

#PSSM
d : 0.22	e : 0.13	f : 0.08	# : 0.06	= : 0.06	: : 0.05	c : 0.05	b : 0.05	" : 0.05	h : 0.03	g : 0.03	$ : 0.03	a : 0.03	! : 0.01	n : 0.01	H : 0.01	[ : 0.01	i : 0.01	
d : 0.18	e : 0.16	[ : 0.10	" : 0.08	# : 0.06	f : 0.06	c : 0.05	b : 0.05	h : 0.03	i : 0.03	= : 0.03	: : 0.03	g : 0.03	$ : 0.03	a : 0.01	
d : 0.20	e : 0.11	f : 0.10	[ : 0.08	c : 0.06	" : 0.06	a : 0.05	# : 0.05	$ : 0.05	h : 0.03	i : 0.03	b : 0.03	= : 0.03	g : 0.03	: : 0.01	m : 0.01	
e : 0.15	[ : 0.10	c : 0.10	d : 0.10	f : 0.10	! : 0.08	# : 0.06	" : 0.06	i : 0.05	$ : 0.05	g : 0.03	= : 0.03	h : 0.01	b : 0.01	m : 0.01	
e : 0.18	c : 0.13	d : 0.11	! : 0.10	f : 0.10	# : 0.06	h : 0.05	i : 0.05	g : 0.05	[ : 0.03	= : 0.03	b : 0.03	m : 0.01	$ : 0.01	
e : 0.22	c : 0.15	d : 0.11	f : 0.10	h : 0.06	# : 0.06	i : 0.06	g : 0.06	b : 0.05	= : 0.03	! : 0.01	m : 0.01	$ : 0.01	
[ : 0.18	e : 0.16	! : 0.08	g : 0.08	h : 0.06	# : 0.06	i : 0.06	d : 0.06	c : 0.06	b : 0.03	f : 0.03	" : 0.03	= : 0.01	$ : 0.01	
e : 0.22	d : 0.13	c : 0.13	! : 0.10	[ : 0.08	g : 0.08	i : 0.05	f : 0.05	h : 0.05	" : 0.05	= : 0.01	b : 0.01	
e : 0.22	d : 0.15	c : 0.15	b : 0.10	g : 0.08	i : 0.05	[ : 0.05	h : 0.05	" : 0.05	= : 0.01	f : 0.01	o : 0.01	a : 0.01	! : 0.01	
c : 0.23	e : 0.16	d : 0.15	b : 0.11	g : 0.06	[ : 0.06	i : 0.05	h : 0.05	! : 0.01	= : 0.01	f : 0.01	o : 0.01	" : 0.01	
[ : 0.16	c : 0.16	d : 0.15	e : 0.15	b : 0.06	! : 0.05	g : 0.05	h : 0.05	" : 0.03	i : 0.03	# : 0.01	f : 0.01	o : 0.01	a : 0.01	
c : 0.18	e : 0.16	b : 0.10	! : 0.08	" : 0.08	d : 0.06	a : 0.06	# : 0.05	h : 0.05	g : 0.03	f : 0.03	i : 0.03	[ : 0.01	o : 0.01	
" : 0.18	! : 0.16	[ : 0.11	c : 0.10	e : 0.10	d : 0.06	b : 0.06	# : 0.06	f : 0.03	a : 0.01	g : 0.01	i : 0.01	o : 0.01	h : 0.01	
! : 0.16	" : 0.16	e : 0.15	d : 0.13	c : 0.10	[ : 0.10	# : 0.06	a : 0.03	b : 0.01	i : 0.01	f : 0.01	o : 0.01	
d : 0.40	e : 0.18	" : 0.11	[ : 0.10	c : 0.05	! : 0.05	# : 0.05	a : 0.01	f : 0.01	
d : 0.54	c : 0.20	e : 0.15	b : 0.03	[ : 0.01	f : 0.01	" : 0.01	# : 0.01	
d : 0.49	c : 0.20	e : 0.11	o : 0.06	[ : 0.05	b : 0.05	f : 0.01	
d : 0.40	c : 0.18	e : 0.11	o : 0.10	n : 0.10	a : 0.03	b : 0.03	m : 0.01	
m : 0.37	n : 0.18	d : 0.13	o : 0.10	l : 0.10	c : 0.03	e : 0.03	b : 0.01	4 : 0.01	
m : 0.37	l : 0.32	n : 0.18	o : 0.10	4 : 0.01	
m : 0.37	l : 0.32	n : 0.18	o : 0.10	4 : 0.01	
m : 0.35	l : 0.22	n : 0.18	o : 0.10	d : 0.08	f : 0.01	4 : 0.01	c : 0.01	
d : 0.52	c : 0.16	e : 0.11	n : 0.08	b : 0.05	o : 0.03	f : 0.01	
d : 0.54	c : 0.22	e : 0.11	b : 0.06	a : 0.03	f : 0.01	
d : 0.54	c : 0.22	e : 0.11	] : 0.08	b : 0.01	f : 0.01	
d : 0.49	e : 0.18	c : 0.10	3 : 0.05	a : 0.03	] : 0.03	2 : 0.03	f : 0.01	4 : 0.01	g : 0.01	b : 0.01	
2 : 0.25	e : 0.20	] : 0.13	3 : 0.10	c : 0.10	d : 0.06	b : 0.05	4 : 0.03	f : 0.01	g : 0.01	5 : 0.01	
2 : 0.23	e : 0.13	3 : 0.13	c : 0.10	d : 0.08	] : 0.08	b : 0.06	4 : 0.03	g : 0.03	i : 0.03	f : 0.01	h : 0.01	5 : 0.01	
e : 0.18	c : 0.16	b : 0.11	d : 0.10	a : 0.10	3 : 0.08	g : 0.05	i : 0.05	4 : 0.03	] : 0.03	f : 0.01	2 : 0.01	h : 0.01	5 : 0.01	
e : 0.22	c : 0.16	] : 0.13	b : 0.10	d : 0.08	i : 0.06	3 : 0.06	g : 0.05	4 : 0.01	f : 0.01	h : 0.01	2 : 0.01	= : 0.01	5 : 0.01	
c : 0.25	e : 0.18	d : 0.10	g : 0.08	2 : 0.06	i : 0.06	] : 0.05	b : 0.05	f : 0.03	3 : 0.03	h : 0.01	a : 0.01	= : 0.01	5 : 0.01	
e : 0.22	c : 0.18	] : 0.10	2 : 0.08	g : 0.08	i : 0.06	d : 0.06	f : 0.05	b : 0.03	3 : 0.03	h : 0.01	= : 0.01	4 : 0.01	a : 0.01	
e : 0.20	c : 0.15	d : 0.11	] : 0.10	h : 0.06	i : 0.06	g : 0.06	2 : 0.06	f : 0.05	= : 0.03	4 : 0.03	6 : 0.01	3 : 0.01	
e : 0.18	d : 0.13	c : 0.10	g : 0.10	] : 0.08	h : 0.06	i : 0.06	f : 0.06	b : 0.03	2 : 0.03	= : 0.03	4 : 0.03	6 : 0.01	3 : 0.01	> : 0.01	
e : 0.15	d : 0.13	f : 0.10	c : 0.10	b : 0.08	g : 0.08	h : 0.06	i : 0.06	] : 0.05	4 : 0.05	= : 0.03	2 : 0.01	6 : 0.01	3 : 0.01	> : 0.01	
d : 0.16	e : 0.15	f : 0.11	i : 0.08	c : 0.08	b : 0.08	g : 0.06	h : 0.05	3 : 0.03	= : 0.03	4 : 0.03	2 : 0.03	6 : 0.01	a : 0.01	> : 0.01	
e : 0.11	d : 0.11	] : 0.11	4 : 0.10	f : 0.10	c : 0.06	g : 0.06	h : 0.05	i : 0.05	b : 0.03	3 : 0.03	= : 0.03	: : 0.03	2 : 0.03	6 : 0.01	> : 0.01	
d : 0.13	e : 0.13	4 : 0.10	f : 0.08	c : 0.06	] : 0.06	2 : 0.06	h : 0.05	a : 0.05	i : 0.03	3 : 0.03	= : 0.03	g : 0.03	! : 0.01	6 : 0.01	5 : 0.01	: : 0.01	b : 0.01	> : 0.01	
e : 0.16	c : 0.13	d : 0.11	4 : 0.08	f : 0.08	2 : 0.08	h : 0.06	] : 0.03	b : 0.03	= : 0.03	g : 0.03	! : 0.01	[ : 0.01	5 : 0.01	E : 0.01	i : 0.01	: : 0.01	> : 0.01	

#score	689.6453536220273
#seq	59
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456SOS_UTP18_UTR_m1_run1.txt

#BEAR
=========[ccclllccc333=========	chr11:75111337-75111658(+)$1	321	59	90	17.3473
eeee[dddd[ccclllccc]dddd]eeeee2	chr12:104341341-104341592(+)$1	251	106	137	15.1188
eeccc[ccc[bblllbb]ccc]ccc333eee	chr17:27047468-27047719(+)$1	251	31	62	13.2495
ddd[dddd!!ccclllccc22dddd]dddd:	chr11:122929515-122929721(-)$1	206	122	153	17.4968
####bbccc[bboooooobb]ccc]bb4444	chr22:22899783-22900056(-)$1	273	106	137	11.5614
c[ccc[bb!!ccclllccc22bb]ccc]ccc	chr11:122929940-122930185(-)$1	245	89	120	18.6085
ddd[dddd!!ccclllccc22dddd]dddd:	chr11:122929521-122929760(-)$1	239	161	192	17.4968
c[ccc[bb!!ccclllccc22bb]ccc]ccc	chr11:122929985-122930224(-)$1	239	128	159	18.6085

#otherMatches

#Seq PSSM
AGCAGUUUCUUGUUUUGCAUGUGGAACUGUU	chr11:75111337-75111658(+)$1	321	59	90	17.3473
UCUCACCAUUUGGAUCCUGUGUGGAGAGGGA	chr12:104341341-104341592(+)$1	251	106	137	15.1188
AGUGCUACUUUGUUUCAUAGUCGUAUCCCUG	chr17:27047468-27047719(+)$1	251	31	62	13.2495
GACCCUAGCACUGUCACAGACCUGGAGUCCA	chr11:122929515-122929721(-)$1	206	122	153	17.4968
ugauuccuccgcuuccccgcagggugaccuu	chr22:22899783-22900056(-)$1	273	106	137	11.5614
uuccaccaaaagcuuggcuaaugauggcaac	chr11:122929940-122930185(-)$1	245	89	120	18.6085
GACCCUAGCACUGUCACAGACCUGGAGUCCA	chr11:122929521-122929760(-)$1	239	161	192	17.4968
uuccaccaaaagcuuggcuaaugauggcaac	chr11:122929985-122930224(-)$1	239	128	159	18.6085

#DB
(((((((((.(((...)))...)))))))))	chr11:75111337-75111658(+)$1	1	59	90	17.3473
((((.((((.(((...))).)))).))))).	chr12:104341341-104341592(+)$1	1	106	137	15.1188
(((((.(((.((...)).))).)))...)))	chr17:27047468-27047719(+)$1	1	31	62	13.2495
(((.((((..(((...)))..)))).)))).	chr11:122929515-122929721(-)$1	1	122	153	17.4968
....(((((.((......)).))).))....	chr22:22899783-22900056(-)$1	1	106	137	11.5614
(.(((.((..(((...)))..)).))).)))	chr11:122929940-122930185(-)$1	1	89	120	18.6085
(((.((((..(((...)))..)))).)))).	chr11:122929521-122929760(-)$1	1	161	192	17.4968
(.(((.((..(((...)))..)).))).)))	chr11:122929985-122930224(-)$1	1	128	159	18.6085

#PSSM
e : 0.25	d : 0.25	c : 0.25	= : 0.12	# : 0.12	
e : 0.25	d : 0.25	[ : 0.25	= : 0.12	# : 0.12	
c : 0.37	d : 0.25	= : 0.12	e : 0.12	# : 0.12	
c : 0.37	[ : 0.25	= : 0.12	e : 0.12	# : 0.12	
c : 0.37	d : 0.25	= : 0.12	[ : 0.12	b : 0.12	
d : 0.37	[ : 0.37	= : 0.12	b : 0.12	
d : 0.37	c : 0.25	b : 0.25	= : 0.12	
d : 0.37	c : 0.25	b : 0.25	= : 0.12	
! : 0.50	c : 0.25	= : 0.12	d : 0.12	
[ : 0.50	! : 0.50	
c : 0.75	b : 0.25	
c : 0.75	b : 0.25	
c : 0.75	l : 0.12	o : 0.12	
l : 0.87	o : 0.12	
l : 0.87	o : 0.12	
l : 0.75	b : 0.12	o : 0.12	
c : 0.75	b : 0.12	o : 0.12	
c : 0.75	] : 0.12	o : 0.12	
c : 0.87	b : 0.12	
2 : 0.50	3 : 0.12	] : 0.12	c : 0.12	b : 0.12	
2 : 0.50	3 : 0.12	d : 0.12	c : 0.12	] : 0.12	
d : 0.37	b : 0.25	3 : 0.12	] : 0.12	c : 0.12	
d : 0.37	c : 0.25	b : 0.25	= : 0.12	
d : 0.37	c : 0.25	] : 0.25	= : 0.12	
c : 0.37	] : 0.25	d : 0.25	= : 0.12	
] : 0.25	c : 0.25	= : 0.12	e : 0.12	3 : 0.12	b : 0.12	
d : 0.25	c : 0.25	= : 0.12	e : 0.12	3 : 0.12	b : 0.12	
d : 0.25	] : 0.25	= : 0.12	e : 0.12	3 : 0.12	4 : 0.12	
e : 0.25	d : 0.25	c : 0.25	= : 0.12	4 : 0.12	
e : 0.25	d : 0.25	c : 0.25	= : 0.12	4 : 0.12	
: : 0.25	c : 0.25	= : 0.12	2 : 0.12	e : 0.12	4 : 0.12	

#score	129.48792718769997
#seq	8
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_UTR_m3_run1.txt

#BEAR
++++dddd[eeeeemmmmeeeee]ddddggggggg22	chr10:79793520-79793765(+)$1	245	109	146	15.7867
b####ffffff[bbmmmmbb]ffffffbb]ccc]bb2	chr3:23959240-23959465(+)$1	225	106	143	14.1019
"""a[ccc[eeeeemmmmeeeeeccc]a]eeeeeccc	chr6:34555094-34555366(-)$1	272	127	164	17.8513
gggggg[gggggggmmmmggggggg]gggggggffff	chr11:72414339-72414544(-)$1	205	136	173	15.8832
+eeeee"""eeeeellleeeeeeeeee333eeeee]c	chr4:39460410-39460632(-)$1	222	174	211	14.7485
gggggg[gggggggmmmmggggggg]ggggggg::ee	chr11:72414344-72414560(-)$1	216	152	189	14.4979

#otherMatches

#Seq PSSM
UCCUUGGCUGUCUGAAGAUAGAUCGCCAUCAUGGUGA	chr10:79793520-79793765(+)$1	245	109	146	15.7867
CAAGAUGGGUGCAUACAAGUACAUCCAGGAGCUAUGG	chr3:23959240-23959465(+)$1	225	106	143	14.1019
AAUGCAGGAGCAGCAGUGGCUGCCCUUCCCACCUGGA	chr6:34555094-34555366(-)$1	272	127	164	17.8513
UGGCUGACUGGGCAGCUGUGUCCAGGCAGCCAGCAGG	chr11:72414339-72414544(-)$1	205	136	173	15.8832
CUGGGAAAGGCUGCGGCGCGGCUCCCACUCUCGGAAC	chr4:39460410-39460632(-)$1	222	174	211	14.7485
UGGCUGACUGGGCAGCUGUGUCCAGGCAGCCAGCAGG	chr11:72414344-72414560(-)$1	216	152	189	14.4979

#DB
....((((.(((((....))))).)))))))))))..	chr10:79793520-79793765(+)$1	1	109	146	15.7867
(....((((((.((....)).)))))))).))).)).	chr3:23959240-23959465(+)$1	1	106	143	14.1019
...(.(((.(((((....)))))))).).))))))))	chr6:34555094-34555366(-)$1	1	127	164	17.8513
((((((.(((((((....))))))).)))))))((((	chr11:72414339-72414544(-)$1	1	136	173	15.8832
.(((((...(((((...))))))))))...))))).)	chr4:39460410-39460632(-)$1	1	174	211	14.7485
((((((.(((((((....))))))).)))))))..((	chr11:72414344-72414560(-)$1	1	152	189	14.4979

#PSSM
+ : 0.33	g : 0.33	b : 0.16	" : 0.16	
g : 0.33	+ : 0.16	# : 0.16	" : 0.16	e : 0.16	
g : 0.33	+ : 0.16	# : 0.16	" : 0.16	e : 0.16	
g : 0.33	+ : 0.16	# : 0.16	a : 0.16	e : 0.16	
g : 0.33	d : 0.16	# : 0.16	[ : 0.16	e : 0.16	
g : 0.33	d : 0.16	f : 0.16	c : 0.16	e : 0.16	
[ : 0.33	d : 0.16	f : 0.16	c : 0.16	" : 0.16	
g : 0.33	d : 0.16	f : 0.16	c : 0.16	" : 0.16	
[ : 0.33	g : 0.33	f : 0.16	" : 0.16	
e : 0.50	g : 0.33	f : 0.16	
e : 0.50	g : 0.33	f : 0.16	
e : 0.50	g : 0.33	[ : 0.16	
e : 0.50	g : 0.33	b : 0.16	
e : 0.50	g : 0.33	b : 0.16	
m : 0.83	l : 0.16	
m : 0.83	l : 0.16	
m : 0.83	l : 0.16	
m : 0.83	e : 0.16	
e : 0.50	g : 0.33	b : 0.16	
e : 0.50	g : 0.33	b : 0.16	
e : 0.50	g : 0.33	] : 0.16	
e : 0.50	g : 0.33	f : 0.16	
e : 0.50	g : 0.33	f : 0.16	
g : 0.33	] : 0.16	f : 0.16	c : 0.16	e : 0.16	
g : 0.33	d : 0.16	f : 0.16	c : 0.16	e : 0.16	
] : 0.33	d : 0.16	f : 0.16	c : 0.16	e : 0.16	
g : 0.33	d : 0.16	f : 0.16	] : 0.16	e : 0.16	
g : 0.33	d : 0.16	b : 0.16	a : 0.16	3 : 0.16	
g : 0.50	b : 0.16	] : 0.16	3 : 0.16	
g : 0.50	] : 0.16	e : 0.16	3 : 0.16	
g : 0.50	e : 0.33	c : 0.16	
g : 0.50	e : 0.33	c : 0.16	
g : 0.50	e : 0.33	c : 0.16	
e : 0.33	g : 0.16	] : 0.16	f : 0.16	: : 0.16	
g : 0.16	b : 0.16	c : 0.16	f : 0.16	e : 0.16	: : 0.16	
2 : 0.16	b : 0.16	c : 0.16	f : 0.16	] : 0.16	e : 0.16	
2 : 0.33	c : 0.33	f : 0.16	e : 0.16	

#score	92.86979304959996
#seq	6
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_UTR_m1_run1.txt

#BEAR
ccc!!cccbbuuuuuuuuuuuubb]ccc]	chr16:2871223-2871473(+)$1	250	157	186	23.9305
d####eeeeevvvvvvvvvvvvveeeee]	chr4:2254136-2254410(-)$1	274	86	115	23.8287
eeee[cccvvvvvvvvvvvvvccc]eeee	chr11:20529695-20529974(+)$1	279	86	115	24.0528
dddddddcccuuuuuuuuuuuuccc]ddd	chr19:3573135-3573385(+)$1	250	30	59	23.6690
eeeeeeeeeettttttttttteeeee]ee	chr18:197464-197732(+)$1	268	163	192	25.0953
diiiiiiiiitttttttttttiiiiiiii	chr22:40355904-40356165(+)$1	261	210	239	25.0435
eeee[cccvvvvvvvvvvvvvccc]eeee	chr1:28169537-28169817(+)$1	280	145	174	24.0528
gggggyyyyyyyyyyyyyyyygggggggh	chr2:239352837-239353121(+)$1	284	163	192	21.3784
ffffff[cccuuuuuuuuuuuuccc]fff	chr10:81915551-81915819(-)$1	268	158	187	23.8745
iiiiiiiiwwwwwwwwwwwwwwiiiiiii	chr8:124368604-124368872(-)$1	268	171	200	22.7533
eeee[eeeeeuuuuuuuuuuuueeeeeee	chr2:191785595-191785883(+)$1	288	146	175	24.8445
dddd!!cccuuuuuuuuuuuuccc333dd	chr17:41109106-41109376(-)$1	270	3	32	24.5396
gg"""eeeeevvvvvvvvvvvvveeeee5	chr8:92096121-92096385(+)$1	264	127	156	23.3495
"ffffff!!auuuuuuuuuuuua22ffff	chr9:138773492-138773804(-)$1	312	36	65	23.0438
gggggggwwwwwwwwwwwwwwggggggg4	chr9:95018946-95019192(-)$1	246	194	223	22.1525
eee!!eeeeettttttttttteeeee]ee	chr12:125262979-125263280(-)$1	301	10	39	25.6945
cc[bbdddduuuuuuuuuuuudddd]bb2	chr4:2513533-2513826(+)$1	293	81	110	22.4070
cc!!bb[ccctttttttttttccc]bb22	chr2:241511690-241511942(+)$1	252	220	249	24.5081
dddd[eeeeettttttttttteeeee22d	chr5:180665123-180665392(-)$1	269	85	114	25.0881
d"""ffffffyyyyyyyyyyyyyyyyfff	chr2:38541646-38541926(-)$1	280	89	118	20.8373
bb"""cccvvvvvvvvvvvvvccc333bb	chr8:141674937-141675242(-)$1	305	16	45	23.1298
::bb[eeeeeuuuuuuuuuuuueeeeebb	chr1:249151656-249151903(-)$1	247	141	170	21.8445
b[eeeeecccuuuuuuuuuuuuccc22ee	chr2:27356067-27356356(-)$1	289	162	191	24.0471
"""ffffffvvvvvvvvvvvvvffffff3	chr16:4524214-4524495(-)$1	281	3	32	23.0644
gggg[eeeeettttttttttteeeeeggg	chr11:64888409-64888666(-)$1	257	129	158	25.6014
c[dddd[ccctttttttttttccc]dddd	chr16:2312320-2312584(-)$1	264	129	158	24.5504
eeee[bbwwwwwwwwwwwwwwbb]eeeee	chr3:50617657-50617927(+)$1	270	81	110	20.9822
hhh:fffffftttttttttttffffff::	chr4:109542967-109543236(+)$1	269	213	242	21.0691
c!!ccc[ccctttttttttttccc]ccc3	chr16:4744787-4745098(+)$1	311	268	297	25.5311
::dddd[ccctttttttttttccc]dddd	chr3:195786993-195787226(-)$1	233	103	132	22.4813
dddd[bbccctttttttttttccc]bbdd	chr19:35500178-35500465(+)$1	287	94	123	24.1306
ee!!fffffftttttttttttffffff44	chr5:151178644-151178918(+)$1	274	233	262	24.6439
cccbb[ddddtttttttttttdddd]bb:	chr9:102729783-102730059(+)$1	276	42	71	22.1940
eeee[cccvvvvvvvvvvvvvccc]eeee	chr3:185637080-185637331(-)$1	251	215	244	24.0528
ccccceeeeettttttttttteeeee]cc	chr3:9870457-9870767(+)$1	310	117	146	25.1660
cc!!fffffftttttttttttffffff22	chr2:153549417-153549701(-)$1	284	251	280	24.4863
ddddcccyyyyyyyyyyyyyyyyccc]dd	chr19:36640582-36640825(+)$1	243	27	56	21.8753
ddd!!ddddayyyyyyyyyyyyyyyya]d	chr7:44838210-44838449(+)$1	239	77	106	21.2647
eddddyyyyyyyyyyyyyyyydddd333e	chr3:40351200-40351484(+)$1	284	121	150	20.8551
dd]bbeeeeettttttttttteeeee:::	chr4:48850275-48850595(+)$1	320	110	139	21.6369
==========vvvvvvvvvvvvv======	chr6:111793208-111793492(-)$1	284	237	266	24.0744
iiiiiiiiwwwwwwwwwwwwwwiiiiiii	chr12:57058139-57058424(-)$1	285	39	68	22.7533
gggggg[ccctttttttttttccc]gggg	chr5:38942338-38942618(-)$1	280	89	118	25.7072
==hhhhhhhhttttttttttthhhhhhhh	chr19:2233797-2234072(-)$1	275	103	132	22.0354
fff[fffffftttttttttttffffff]f	chr6:32942090-32942386(+)$1	296	85	114	24.0210
#ccc!!ddddtttttttttttdddd22cc	chr7:100286036-100286294(-)$1	258	121	150	23.7587
f[a!!eeeeeuuuuuuuuuuuueeeee]a	chr3:119153587-119153881(-)$1	294	149	178	25.0272
fff!!eeeeettttttttttteeeee333	chr1:1027388-1027634(-)$1	246	126	155	25.6858
cc!!fffffftttttttttttffffff]c	chr16:2120312-2120583(+)$1	271	98	127	24.6890
ggeeeeewwwwwwwwwwwwwweeeee333	chr2:61705979-61706253(-)$1	274	215	244	22.3294
dddgggggggtttttttttttggggggg3	chr19:54646522-54646762(+)$1	240	79	108	25.1350
dd"""eeeeettttttttttteeeee22d	chr4:99956409-99956689(+)$1	280	211	240	25.2519
fffgggggggtttttttttttggggggg:	chr21:45741463-45741718(+)$1	255	68	97	23.8807
eeeggggggguuuuuuuuuuuuggggggg	chr20:42088260-42088552(+)$1	292	131	160	24.6030
dddgggggggwwwwwwwwwwwwwwggggg	chr6:31655413-31655674(-)$1	261	195	224	21.8715
eeee[eeeeettttttttttteeeee]ee	chr22:21345815-21346030(+)$1	215	127	156	25.5061
iiiiiii[bbtttttttttttbbiiiiii	chr19:15480800-15481086(-)$1	286	46	75	24.3594

#otherMatches

#Seq PSSM
ACCCUUGGCCUGUAACAAGAAUGGACUGU	chr16:2871223-2871473(+)$1	250	157	186	23.9305
UCUGUGCAGGGCCCUGGAAACUGCCUGCU	chr4:2254136-2254410(-)$1	274	86	115	23.8287
UACAUUGUUUACUUUUCUGCUACACUGUA	chr11:20529695-20529974(+)$1	279	86	115	24.0528
GAUCCGGCCCCCCCAGCGCUCCGGGCCCG	chr19:3573135-3573385(+)$1	250	30	59	23.6690
UGUUGGAUACAAAUGAUGCGAGUAUUGCA	chr18:197464-197732(+)$1	268	163	192	25.0953
AGGUUGGCUUCUUCAUCAUCCGGGCCAGC	chr22:40355904-40356165(+)$1	261	210	239	25.0435
GAACCCUGGCUUAGAACCUGACAGAGUUC	chr1:28169537-28169817(+)$1	280	145	174	24.0528
CGUCAACCACCACCUGACUCCUGAUGUCC	chr2:239352837-239353121(+)$1	284	163	192	21.3784
CUUCAGGGGAUUACCGGAAGAUUCUGCUG	chr10:81915551-81915819(-)$1	268	158	187	23.8745
CAUCAAUUAUUUUUUUUGACGAAAUUGAU	chr8:124368604-124368872(-)$1	268	171	200	22.7533
UUUUGCAGCAAGGAGUAAAUAAUGCUGAA	chr2:191785595-191785883(+)$1	288	146	175	24.8445
cauugugauuuucaauaaaguaucuaaag	chr17:41109106-41109376(-)$1	270	3	32	24.5396
CUCACAUUUUACAAACACCAAUAGAGAUA	chr8:92096121-92096385(+)$1	264	127	156	23.3495
CUCUUCAGACGGAAAGGGCGAGGGAUGAA	chr9:138773492-138773804(-)$1	312	36	65	23.0438
CAGUCUCUCAUUGGCUUCUUUGAGACUGA	chr9:95018946-95019192(-)$1	246	194	223	22.1525
UCUUCUCACUUCUGACAGCCUGGUGGCGG	chr12:125262979-125263280(-)$1	301	10	39	25.6945
GCUUCGUUUAUCACUUAUAUCAAACUGAU	chr4:2513533-2513826(+)$1	293	81	110	22.4070
GUGCAACCGCUCCUUCUUCCCGUGCUUCG	chr2:241511690-241511942(+)$1	252	220	249	24.5081
UCUUGAGAUGGGCAGAAUUAACAUCUGGA	chr5:180665123-180665392(-)$1	269	85	114	25.0881
AGGCAUUAUUUUAACUAACUCUAUUUAAU	chr2:38541646-38541926(-)$1	280	89	118	20.8373
AAGCACUGAGAAAAAGAAAUACAGAAAUU	chr8:141674937-141675242(-)$1	305	16	45	23.1298
AUGGCUCUCCAGGGUAAGAGGAGGAGACU	chr1:249151656-249151903(-)$1	247	141	170	21.8445
CAGGGGCCUCGACAAAGGAAGGGAGCAGC	chr2:27356067-27356356(-)$1	289	162	191	24.0471
AGUGGACUCGGCCGCAGAAUCGGGGUCCC	chr16:4524214-4524495(-)$1	281	3	32	23.0644
CCUGCUGGUGCCUUCCUUUCCCACUACAG	chr11:64888409-64888666(-)$1	257	129	158	25.6014
GCGUGACCCUUCUUUCCCUCUAGGAUCAC	chr16:2312320-2312584(-)$1	264	129	158	24.5504
AGUGUGCUGUUCCCACUUCCUGUUCAUUC	chr3:50617657-50617927(+)$1	270	81	110	20.9822
GUAAGUAUUUCUGAAAAUUUUAAGUAUAU	chr4:109542967-109543236(+)$1	269	213	242	21.0691
GCCAGCUCCUCUUUGCCCUCAAGGUGCUC	chr16:4744787-4745098(+)$1	311	268	297	25.5311
UUCAGGUACCAGCAACUUCAAGGUUUCUG	chr3:195786993-195787226(-)$1	233	103	132	22.4813
GGGGCUGGCCGGUGAUCUAGGGGCUCAUC	chr19:35500178-35500465(+)$1	287	94	123	24.1306
AGGUCCUAAUAAAACUUGUACAUUAGGCA	chr5:151178644-151178918(+)$1	274	233	262	24.6439
UGGCAAGGCUGCAGUACCCAGGGCCCUGA	chr9:102729783-102730059(+)$1	276	42	71	22.1940
UGUUUGAAGCUCAUGAAAAUAUUCUAACG	chr3:185637080-185637331(-)$1	251	215	244	24.0528
CUGUCCUCCCUGAGUUUGGAUGGGAGAGA	chr3:9870457-9870767(+)$1	310	117	146	25.1660
CCUUUUUCUUUUUUCUGCAAUAGGAAAUU	chr2:153549417-153549701(-)$1	284	251	280	24.4863
GCUGCAGUCCCCUUCCUCCUAUUUUGCCA	chr19:36640582-36640825(+)$1	243	27	56	21.8753
AGAAAGGUUCAAAACCAGAUAUACUAGAA	chr7:44838210-44838449(+)$1	239	77	106	21.2647
AAGCGUUUUCUUAUUUAUUUCCGUUUUCU	chr3:40351200-40351484(+)$1	284	121	150	20.8551
UACUCAGAAAUACUUAACUCUUUUCUUUA	chr4:48850275-48850595(+)$1	320	110	139	21.6369
UGAGGAAGAUUUCUCUCAAAAUUGUUUUU	chr6:111793208-111793492(-)$1	284	237	266	24.0744
GGCAACUAUGUAUUUCGAUUUUUGGUUGC	chr12:57058139-57058424(-)$1	285	39	68	22.7533
AUCAUCUGUUUUUAUAAAAGUAAUUGAUG	chr5:38942338-38942618(-)$1	280	89	118	25.7072
GUGGGGCUGCAGGUGGCAGAGGCAGUCCU	chr19:2233797-2234072(-)$1	275	103	132	22.0354
UGUGCAGAUGCACUUUUUCCUCAUUUGGA	chr6:32942090-32942386(+)$1	296	85	114	24.0210
AGGACUCGAGCUUCCCAUCUCCUCGCCUC	chr7:100286036-100286294(-)$1	258	121	150	23.7587
UAGUUGGUCAGAAAAUACAAUAUGGCCUC	chr3:119153587-119153881(-)$1	294	149	178	25.0272
CCUCACCUGCUGUCUUCAUCUGCAGGACU	chr1:1027388-1027634(-)$1	246	126	155	25.6858
CGUUUUCACCUCCUGCGCCGUGGUGAGCU	chr16:2120312-2120583(+)$1	271	98	127	24.6890
GCUGAUGAAGAGAAACAUAAACGUCAAAU	chr2:61705979-61706253(-)$1	274	215	244	22.3294
AUGUCUCUGGGUUUUUACCAGCCAGGGAA	chr19:54646522-54646762(+)$1	240	79	108	25.1350
GCUAUGUUGAUUCUUCAUUUUUCAAUUUG	chr4:99956409-99956689(+)$1	280	211	240	25.2519
GCCGGCCUGCUGACCUCCUGUGCAGGUUG	chr21:45741463-45741718(+)$1	255	68	97	23.8807
UUCCCUUCAUGUGAUAAAGGUGGUGGAGG	chr20:42088260-42088552(+)$1	292	131	160	24.6030
UGUCUGUCUGUCCUCCGCUCCUACCAGGC	chr6:31655413-31655674(-)$1	261	195	224	21.8715
UGCUCCGGGGCUCCCCACCACCCCCGCAG	chr22:21345815-21346030(+)$1	215	127	156	25.5061
AGUCUGGACACACCAGCUCACUGCCGGAC	chr19:15480800-15481086(-)$1	286	46	75	24.3594

#DB
(((..(((((............)).))).	chr16:2871223-2871473(+)$1	1	157	186	23.9305
(....(((((.............))))).	chr4:2254136-2254410(-)$1	1	86	115	23.8287
((((.(((.............))).))))	chr11:20529695-20529974(+)$1	1	86	115	24.0528
((((((((((............))).)))	chr19:3573135-3573385(+)$1	1	30	59	23.6690
((((((((((...........))))).))	chr18:197464-197732(+)$1	1	163	192	25.0953
)(((((((((...........))))))))	chr22:40355904-40356165(+)$1	1	210	239	25.0435
((((.(((.............))).))))	chr1:28169537-28169817(+)$1	1	145	174	24.0528
(((((................))))))))	chr2:239352837-239353121(+)$1	1	163	192	21.3784
((((((.(((............))).)))	chr10:81915551-81915819(-)$1	1	158	187	23.8745
((((((((..............)))))))	chr8:124368604-124368872(-)$1	1	171	200	22.7533
((((.(((((............)))))))	chr2:191785595-191785883(+)$1	1	146	175	24.8445
((((..(((............)))...))	chr17:41109106-41109376(-)$1	1	3	32	24.5396
((...(((((.............))))).	chr8:92096121-92096385(+)$1	1	127	156	23.3495
.((((((..(............)..))))	chr9:138773492-138773804(-)$1	1	36	65	23.0438
(((((((..............))))))).	chr9:95018946-95019192(-)$1	1	194	223	22.1525
(((..(((((...........))))).))	chr12:125262979-125263280(-)$1	1	10	39	25.6945
((.((((((............)))).)).	chr4:2513533-2513826(+)$1	1	81	110	22.4070
((..((.(((...........))).))..	chr2:241511690-241511942(+)$1	1	220	249	24.5081
((((.(((((...........)))))..)	chr5:180665123-180665392(-)$1	1	85	114	25.0881
(...((((((................)))	chr2:38541646-38541926(-)$1	1	89	118	20.8373
((...(((.............)))...))	chr8:141674937-141675242(-)$1	1	16	45	23.1298
..((.(((((............)))))))	chr1:249151656-249151903(-)$1	1	141	170	21.8445
(.((((((((............)))..))	chr2:27356067-27356356(-)$1	1	162	191	24.0471
...((((((.............)))))).	chr16:4524214-4524495(-)$1	1	3	32	23.0644
((((.(((((...........))))))))	chr11:64888409-64888666(-)$1	1	129	158	25.6014
(.((((.(((...........))).))))	chr16:2312320-2312584(-)$1	1	129	158	24.5504
((((.((..............)).)))))	chr3:50617657-50617927(+)$1	1	81	110	20.9822
))).((((((...........))))))..	chr4:109542967-109543236(+)$1	1	213	242	21.0691
(..(((.(((...........))).))).	chr16:4744787-4745098(+)$1	1	268	297	25.5311
..((((.(((...........))).))))	chr3:195786993-195787226(-)$1	1	103	132	22.4813
((((.(((((...........))).))))	chr19:35500178-35500465(+)$1	1	94	123	24.1306
((..((((((...........))))))..	chr5:151178644-151178918(+)$1	1	233	262	24.6439
)))((.((((...........)))).)).	chr9:102729783-102730059(+)$1	1	42	71	22.1940
((((.(((.............))).))))	chr3:185637080-185637331(-)$1	1	215	244	24.0528
))((((((((...........))))).))	chr3:9870457-9870767(+)$1	1	117	146	25.1660
((..((((((...........))))))..	chr2:153549417-153549701(-)$1	1	251	280	24.4863
(((((((................))).))	chr19:36640582-36640825(+)$1	1	27	56	21.8753
(((..(((((................).)	chr7:44838210-44838449(+)$1	1	77	106	21.2647
(((((................))))...)	chr3:40351200-40351484(+)$1	1	121	150	20.8551
)).))(((((...........)))))...	chr4:48850275-48850595(+)$1	1	110	139	21.6369
((((((((((.............))))))	chr6:111793208-111793492(-)$1	1	237	266	24.0744
((((((((..............)))))))	chr12:57058139-57058424(-)$1	1	39	68	22.7533
((((((.(((...........))).))))	chr5:38942338-38942618(-)$1	1	89	118	25.7072
((((((((((...........))))))))	chr19:2233797-2234072(-)$1	1	103	132	22.0354
(((.((((((...........)))))).)	chr6:32942090-32942386(+)$1	1	85	114	24.0210
.(((..((((...........))))..))	chr7:100286036-100286294(-)$1	1	121	150	23.7587
(.(..(((((............))))).)	chr3:119153587-119153881(-)$1	1	149	178	25.0272
(((..(((((...........)))))...	chr1:1027388-1027634(-)$1	1	126	155	25.6858
((..((((((...........)))))).)	chr16:2120312-2120583(+)$1	1	98	127	24.6890
(((((((..............)))))...	chr2:61705979-61706253(-)$1	1	215	244	22.3294
((((((((((...........))))))).	chr19:54646522-54646762(+)$1	1	79	108	25.1350
((...(((((...........)))))..)	chr4:99956409-99956689(+)$1	1	211	240	25.2519
)))(((((((...........))))))).	chr21:45741463-45741718(+)$1	1	68	97	23.8807
((((((((((............)))))))	chr20:42088260-42088552(+)$1	1	131	160	24.6030
((((((((((..............)))))	chr6:31655413-31655674(-)$1	1	195	224	21.8715
((((.(((((...........))))).))	chr22:21345815-21346030(+)$1	1	127	156	25.5061
(((((((.((...........))))))))	chr19:15480800-15481086(-)$1	1	46	75	24.3594

#PSSM
d : 0.22	e : 0.19	c : 0.15	g : 0.10	f : 0.08	i : 0.05	" : 0.03	b : 0.03	: : 0.03	= : 0.03	h : 0.01	# : 0.01	
d : 0.19	e : 0.17	c : 0.14	g : 0.10	f : 0.08	i : 0.07	[ : 0.05	" : 0.03	: : 0.03	= : 0.03	# : 0.01	b : 0.01	h : 0.01	! : 0.01	
e : 0.19	d : 0.19	f : 0.08	" : 0.08	! : 0.08	c : 0.07	i : 0.07	g : 0.07	h : 0.03	# : 0.01	[ : 0.01	b : 0.01	] : 0.01	= : 0.01	a : 0.01	
! : 0.15	e : 0.15	d : 0.14	g : 0.14	i : 0.07	" : 0.07	b : 0.07	f : 0.05	c : 0.05	# : 0.01	: : 0.01	= : 0.01	h : 0.01	[ : 0.01	
[ : 0.17	f : 0.15	! : 0.12	g : 0.12	d : 0.07	i : 0.07	b : 0.07	e : 0.05	" : 0.05	c : 0.05	# : 0.01	= : 0.01	h : 0.01	
e : 0.28	f : 0.15	c : 0.12	g : 0.10	d : 0.08	i : 0.07	b : 0.05	y : 0.03	! : 0.03	[ : 0.01	= : 0.01	h : 0.01	
e : 0.28	f : 0.14	c : 0.12	[ : 0.10	d : 0.08	g : 0.08	i : 0.07	y : 0.03	b : 0.03	= : 0.01	h : 0.01	
c : 0.26	e : 0.24	f : 0.12	d : 0.07	g : 0.07	i : 0.05	y : 0.05	w : 0.05	! : 0.01	= : 0.01	h : 0.01	[ : 0.01	
e : 0.24	c : 0.17	f : 0.12	w : 0.08	v : 0.07	d : 0.07	g : 0.07	y : 0.05	b : 0.03	i : 0.01	! : 0.01	= : 0.01	h : 0.01	
e : 0.24	c : 0.15	f : 0.10	v : 0.08	w : 0.08	g : 0.07	y : 0.05	b : 0.03	u : 0.03	a : 0.03	d : 0.03	i : 0.01	= : 0.01	h : 0.01	
t : 0.47	u : 0.19	v : 0.14	w : 0.10	y : 0.08	
t : 0.47	u : 0.19	v : 0.14	w : 0.10	y : 0.08	
t : 0.47	u : 0.19	v : 0.14	w : 0.10	y : 0.08	
t : 0.47	u : 0.19	v : 0.14	w : 0.10	y : 0.08	
t : 0.47	u : 0.19	v : 0.14	w : 0.10	y : 0.08	
t : 0.47	u : 0.19	v : 0.14	w : 0.10	y : 0.08	
t : 0.47	u : 0.19	v : 0.14	w : 0.10	y : 0.08	
t : 0.47	u : 0.19	v : 0.14	w : 0.10	y : 0.08	
t : 0.47	u : 0.19	v : 0.14	w : 0.10	y : 0.08	
t : 0.47	u : 0.19	v : 0.14	w : 0.10	y : 0.08	
t : 0.47	u : 0.19	v : 0.14	w : 0.10	y : 0.08	
c : 0.19	e : 0.17	u : 0.15	f : 0.08	v : 0.07	g : 0.07	d : 0.07	w : 0.05	y : 0.05	b : 0.03	i : 0.01	h : 0.01	
c : 0.24	e : 0.22	f : 0.10	g : 0.08	d : 0.07	b : 0.05	v : 0.05	i : 0.05	y : 0.05	a : 0.01	h : 0.01	w : 0.01	
e : 0.26	c : 0.26	f : 0.10	g : 0.08	i : 0.07	d : 0.07	y : 0.03	b : 0.01	2 : 0.01	] : 0.01	= : 0.01	h : 0.01	w : 0.01	
e : 0.28	] : 0.17	g : 0.10	f : 0.10	c : 0.07	i : 0.07	d : 0.07	3 : 0.03	y : 0.03	2 : 0.01	= : 0.01	h : 0.01	
e : 0.33	g : 0.12	f : 0.12	] : 0.07	i : 0.07	c : 0.05	3 : 0.05	b : 0.03	y : 0.03	2 : 0.03	d : 0.03	= : 0.01	h : 0.01	
e : 0.15	f : 0.15	g : 0.14	] : 0.08	3 : 0.08	i : 0.07	b : 0.07	2 : 0.07	d : 0.05	c : 0.03	a : 0.01	: : 0.01	= : 0.01	h : 0.01	
e : 0.19	g : 0.14	d : 0.10	c : 0.07	i : 0.07	f : 0.07	b : 0.07	2 : 0.07	] : 0.07	3 : 0.05	: : 0.03	4 : 0.01	= : 0.01	h : 0.01	
e : 0.17	d : 0.15	3 : 0.08	i : 0.07	f : 0.07	g : 0.07	: : 0.07	2 : 0.05	c : 0.05	] : 0.03	h : 0.03	4 : 0.03	b : 0.03	5 : 0.01	= : 0.01	a : 0.01	

#score	1347.4426349868909
#seq	57
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_CDS_m3_run2.txt

#BEAR
dddpppppppdddd	chr6:26197341-26197588(-)$1	247	128	142	13.3265
dddpppppppdddd	chr6:26250269-26250527(-)$1	258	158	172	13.3265
cccpppppppccc]	chr1:228645004-228645246(-)$1	242	201	215	13.6203
cccpppppppccc:	chr6:26055917-26056127(-)$1	210	165	179	12.9958
cccpppppppccc3	chr6:27776204-27776455(+)$1	251	150	164	13.7316
cccpppppppccc3	chr6:27776257-27776474(+)$1	217	97	111	13.7316
dddpppppppdddd	chr6:27114803-27115051(+)$1	248	154	168	13.3265
cccpppppppcccb	chr6:27778156-27778366(+)$1	210	26	40	13.4532
cccpppppppccc:	chr6:26055927-26056132(-)$1	205	170	184	12.9958
eeerrrrrrrrree	chr6:26104348-26104600(+)$1	252	225	239	8.4150
cccpppppppccc:	chr6:26217459-26217694(+)$1	235	110	124	12.9958
cccpppppppccc:	chr6:26055932-26056152(-)$1	220	13	27	12.9958
ebbpppppppbb]e	chr6:26157152-26157367(+)$1	215	60	74	11.6936
cccpppppppccc3	chr6:26158665-26158934(+)$1	269	116	130	13.7316
dddpppppppdddd	chr6:27775881-27776120(+)$1	239	42	56	13.3265
[bbpppppppbbff	chr6:26204764-26205046(+)$1	282	177	191	11.4080
ccrrrrrrrrrccc	chr6:26198977-26199246(-)$1	269	164	178	9.3411
ddrrrrrrrrrddd	chr6:26124312-26124580(+)$1	268	247	261	9.2084
cccpppppppccca	chr6:27805558-27805834(-)$1	276	84	98	13.6274
dddpppppppdddd	chr6:27861507-27861762(+)$1	255	152	166	13.3265
dddpppppppdddd	chr6:26252152-26252401(+)$1	249	46	60	13.3265
cccpppppppcccf	chr11:118965970-118966233(-)$1	263	215	229	13.4216
ebbpppppppbb]e	chr6:26157167-26157441(+)$1	274	45	59	11.6936
cccpppppppcccB	chr6:27778098-27778306(+)$1	208	69	83	13.0085
cccpppppppccc3	chr6:27101085-27101301(+)$1	216	132	146	13.7316
eeepppppppeeee	chr6:27107014-27107257(+)$1	243	180	194	12.2301
dddpppppppdddd	chr6:27101136-27101368(+)$1	232	200	214	13.3265
eeepppppppeeee	chr6:26104270-26104518(+)$1	248	12	26	12.2301
dddpppppppdddd	chr6:26250327-26250600(-)$1	273	231	245	13.3265
eeepppppppeeee	chr6:26188889-26189109(-)$1	220	200	214	12.2301
dddpppppppdddd	chr6:26020995-26021279(+)$1	284	106	120	13.3265
cccpppppppcccB	chr6:27778110-27778356(+)$1	246	57	71	13.0085
dddpppppppdddd	chr6:26031785-26032007(-)$1	222	35	49	13.3265
cccpppppppccc3	chr6:27776274-27776518(+)$1	244	80	94	13.7316

#otherMatches

#Seq PSSM
ACUGCUCGCAAGUC	chr6:26197341-26197588(-)$1	247	128	142	13.3265
AACAAUUUCAGUUG	chr6:26250269-26250527(-)$1	258	158	172	13.3265
GCACUGAUCCUGCA	chr1:228645004-228645246(-)$1	242	201	215	13.6203
CUCAAUAAAAGAGC	chr6:26055917-26056127(-)$1	210	165	179	12.9958
GCCACCACAAGGCG	chr6:27776204-27776455(+)$1	251	150	164	13.7316
GCCACCACAAGGCG	chr6:27776257-27776474(+)$1	217	97	111	13.7316
CCGCUCUUCUCGGG	chr6:27114803-27115051(+)$1	248	154	168	13.3265
GCGCCAUCCACGCC	chr6:27778156-27778366(+)$1	210	26	40	13.4532
CUCAAUAAAAGAGC	chr6:26055927-26056132(-)$1	205	170	184	12.9958
UUUAAAGAGCUGAA	chr6:26104348-26104600(+)$1	252	225	239	8.4150
GCCACCAUAAGGCC	chr6:26217459-26217694(+)$1	235	110	124	12.9958
GCCCAAAGAAGGCC	chr6:26055932-26056152(-)$1	220	13	27	12.9958
GCUAAACCAAAGAC	chr6:26157152-26157367(+)$1	215	60	74	11.6936
UGCCAAGUAAGCAU	chr6:26158665-26158934(+)$1	269	116	130	13.7316
AAAUGUACGUUUUU	chr6:27775881-27776120(+)$1	239	42	56	13.3265
CGAGAUAACAUCCA	chr6:26204764-26205046(+)$1	282	177	191	11.4080
GUAAAACGAGAACU	chr6:26198977-26199246(-)$1	269	164	178	9.3411
CUGCUCCGUAAAGG	chr6:26124312-26124580(+)$1	268	247	261	9.2084
GCCACCACAAGGCC	chr6:27805558-27805834(-)$1	276	84	98	13.6274
AGCCACUCACGCUU	chr6:27861507-27861762(+)$1	255	152	166	13.3265
GGCCAAGCACGCCG	chr6:26252152-26252401(+)$1	249	46	60	13.3265
CCGUGUACACCGGC	chr11:118965970-118966233(-)$1	263	215	229	13.4216
GCUAAACCAAAGAC	chr6:26157167-26157441(+)$1	274	45	59	11.6936
AGGACACCAACCUG	chr6:27778098-27778306(+)$1	208	69	83	13.0085
GCCACCACAAGGCG	chr6:27101085-27101301(+)$1	216	132	146	13.7316
GCGCCUUGCUCGCC	chr6:27107014-27107257(+)$1	243	180	194	12.2301
CAUUUAUUCCAUGU	chr6:27101136-27101368(+)$1	232	200	214	13.3265
CCGUUUGGCUCGGC	chr6:26104270-26104518(+)$1	248	12	26	12.2301
AACAAUUUCAGUUG	chr6:26250327-26250600(-)$1	273	231	245	13.3265
UGCUAAAAGUGUAG	chr6:26188889-26189109(-)$1	220	200	214	12.2301
CGCCGCAUCCGCGG	chr6:26020995-26021279(+)$1	284	106	120	13.3265
AGGACACCAACCUG	chr6:27778110-27778356(+)$1	246	57	71	13.0085
AGGACACAAACCUU	chr6:26031785-26032007(-)$1	222	35	49	13.3265
GCCACCACAAGGCG	chr6:27776274-27776518(+)$1	244	80	94	13.7316

#DB
(((.......))))	chr6:26197341-26197588(-)$1	1	128	142	13.3265
(((.......))))	chr6:26250269-26250527(-)$1	1	158	172	13.3265
(((.......))).	chr1:228645004-228645246(-)$1	1	201	215	13.6203
(((.......))).	chr6:26055917-26056127(-)$1	1	165	179	12.9958
(((.......))).	chr6:27776204-27776455(+)$1	1	150	164	13.7316
(((.......))).	chr6:27776257-27776474(+)$1	1	97	111	13.7316
(((.......))))	chr6:27114803-27115051(+)$1	1	154	168	13.3265
(((.......))))	chr6:27778156-27778366(+)$1	1	26	40	13.4532
(((.......))).	chr6:26055927-26056132(-)$1	1	170	184	12.9958
(((.........))	chr6:26104348-26104600(+)$1	1	225	239	8.4150
(((.......))).	chr6:26217459-26217694(+)$1	1	110	124	12.9958
(((.......))).	chr6:26055932-26056152(-)$1	1	13	27	12.9958
(((.......)).)	chr6:26157152-26157367(+)$1	1	60	74	11.6936
(((.......))).	chr6:26158665-26158934(+)$1	1	116	130	13.7316
(((.......))))	chr6:27775881-27776120(+)$1	1	42	56	13.3265
.((.......))))	chr6:26204764-26205046(+)$1	1	177	191	11.4080
((.........)))	chr6:26198977-26199246(-)$1	1	164	178	9.3411
((.........)))	chr6:26124312-26124580(+)$1	1	247	261	9.2084
(((.......))))	chr6:27805558-27805834(-)$1	1	84	98	13.6274
(((.......))))	chr6:27861507-27861762(+)$1	1	152	166	13.3265
(((.......))))	chr6:26252152-26252401(+)$1	1	46	60	13.3265
(((.......))))	chr11:118965970-118966233(-)$1	1	215	229	13.4216
(((.......)).)	chr6:26157167-26157441(+)$1	1	45	59	11.6936
(((.......))))	chr6:27778098-27778306(+)$1	1	69	83	13.0085
(((.......))).	chr6:27101085-27101301(+)$1	1	132	146	13.7316
(((.......))))	chr6:27107014-27107257(+)$1	1	180	194	12.2301
(((.......))))	chr6:27101136-27101368(+)$1	1	200	214	13.3265
(((.......))))	chr6:26104270-26104518(+)$1	1	12	26	12.2301
(((.......))))	chr6:26250327-26250600(-)$1	1	231	245	13.3265
(((.......))))	chr6:26188889-26189109(-)$1	1	200	214	12.2301
(((.......))))	chr6:26020995-26021279(+)$1	1	106	120	13.3265
(((.......))))	chr6:27778110-27778356(+)$1	1	57	71	13.0085
(((.......))))	chr6:26031785-26032007(-)$1	1	35	49	13.3265
(((.......))).	chr6:27776274-27776518(+)$1	1	80	94	13.7316

#PSSM
c : 0.47	d : 0.32	e : 0.17	[ : 0.02	
c : 0.47	d : 0.32	e : 0.11	b : 0.08	
c : 0.44	d : 0.29	e : 0.11	b : 0.08	r : 0.05	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
c : 0.44	d : 0.29	r : 0.08	b : 0.08	e : 0.08	
c : 0.47	d : 0.32	b : 0.08	e : 0.08	r : 0.02	
c : 0.47	d : 0.32	e : 0.11	] : 0.05	f : 0.02	
d : 0.32	e : 0.17	3 : 0.14	: : 0.11	f : 0.05	B : 0.05	] : 0.02	b : 0.02	c : 0.02	a : 0.02	

#score	432.496830731491
#seq	34
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_CDS_m3_run2.txt

#BEAR
IIIIIIII}CCCYYDDDDBBZZZFFF	chr12:132198465-132198728(+)$1	263	234	260	15.1107
FFFFFFEEEEEZZZDDDD}AEEEEEd	chr16:546658-546950(+)$1	292	163	189	15.7132
DDD}FFFFFFZZZEEEEE}AZZZDDD	chr6:43495813-43496097(-)$1	284	257	283	19.6710
DD}DDDDYYEEEEE}EEEEEZZZDDD	chr5:179043852-179044097(-)$1	245	218	244	15.9310
}BB}EEEEE______CCC}BBYYDDD	chr9:117054285-117054525(+)$1	240	136	162	15.3029
EEEEFFFFFFCCCEEEEE}EEEEE::	chr3:42662766-42663028(+)$1	262	234	260	15.3735
EEEEFFFFFF}FFFFFFDDDD}DDDD	chr16:89836543-89836834(-)$1	291	154	180	14.8044
CCC}FFFFFF}BB}EEEEE}BB}CCC	chr9:123202121-123202413(-)$1	292	181	207	16.9583

#otherMatches

#Seq PSSM
AGAGGAGGCGCGAAUAGAGGCCCUGU	chr12:132198465-132198728(+)$1	263	234	260	15.1107
AGUCCGACAAAGCGGCUCUCCAGCAA	chr16:546658-546950(+)$1	292	163	189	15.7132
GGGAAAAGGAAGCGGGCAGGGAUUCU	chr6:43495813-43496097(-)$1	284	257	283	19.6710
AUGGGCUUGUGUAAAUAUCGUUAGUU	chr5:179043852-179044097(-)$1	245	218	244	15.9310
AAGCGAGGAACAGAGGGCAGAACGGG	chr9:117054285-117054525(+)$1	240	136	162	15.3029
UUUUUCAUGUGAGUAGGCAUAAUUCA	chr3:42662766-42663028(+)$1	262	234	260	15.3735
GCUGUCUCUGCAGGCAGGGUCCCUGG	chr16:89836543-89836834(-)$1	291	154	180	14.8044
CUGAUGACCUUGCCAGCUUGCCAUCA	chr9:123202121-123202413(-)$1	292	181	207	16.9583

#DB
)))))))).)))..))))))...)))	chr12:132198465-132198728(+)$1	1	234	260	15.1107
)))))))))))...)))).))))))(	chr16:546658-546950(+)$1	1	163	189	15.7132
))).))))))...))))).)...)))	chr6:43495813-43496097(-)$1	1	257	283	19.6710
)).))))..))))).)))))...)))	chr5:179043852-179044097(-)$1	1	218	244	15.9310
.)).)))))......))).))..)))	chr9:117054285-117054525(+)$1	1	136	162	15.3029
)))))))))))))))))).)))))..	chr3:42662766-42663028(+)$1	1	234	260	15.3735
)))))))))).)))))))))).))))	chr16:89836543-89836834(-)$1	1	154	180	14.8044
))).)))))).)).))))).)).)))	chr9:123202121-123202413(-)$1	1	181	207	16.9583

#PSSM
D : 0.25	E : 0.25	I : 0.12	F : 0.12	} : 0.12	C : 0.12	
D : 0.25	E : 0.25	I : 0.12	F : 0.12	B : 0.12	C : 0.12	
E : 0.25	I : 0.12	F : 0.12	D : 0.12	} : 0.12	B : 0.12	C : 0.12	
} : 0.37	E : 0.25	I : 0.12	F : 0.12	D : 0.12	
F : 0.62	I : 0.12	D : 0.12	E : 0.12	
F : 0.62	I : 0.12	D : 0.12	E : 0.12	
F : 0.50	E : 0.25	I : 0.12	D : 0.12	
F : 0.50	E : 0.25	I : 0.12	Y : 0.12	
F : 0.50	E : 0.25	} : 0.12	Y : 0.12	
F : 0.50	E : 0.25	C : 0.12	_ : 0.12	
C : 0.25	E : 0.25	} : 0.25	Z : 0.12	_ : 0.12	
C : 0.25	Z : 0.25	E : 0.12	_ : 0.12	F : 0.12	B : 0.12	
Z : 0.25	Y : 0.12	E : 0.12	_ : 0.12	C : 0.12	F : 0.12	B : 0.12	
E : 0.37	Y : 0.12	Z : 0.12	_ : 0.12	F : 0.12	} : 0.12	
E : 0.37	D : 0.25	} : 0.12	_ : 0.12	F : 0.12	
E : 0.50	D : 0.25	C : 0.12	F : 0.12	
E : 0.50	D : 0.25	C : 0.12	F : 0.12	
E : 0.50	D : 0.37	C : 0.12	
} : 0.50	E : 0.25	B : 0.12	D : 0.12	
B : 0.25	A : 0.25	E : 0.25	D : 0.12	} : 0.12	
Z : 0.37	E : 0.25	B : 0.25	D : 0.12	
Z : 0.37	E : 0.25	Y : 0.12	} : 0.12	B : 0.12	
Z : 0.37	E : 0.25	Y : 0.12	D : 0.12	} : 0.12	
D : 0.50	E : 0.25	F : 0.12	C : 0.12	
D : 0.50	F : 0.12	E : 0.12	: : 0.12	C : 0.12	
D : 0.50	F : 0.12	d : 0.12	: : 0.12	C : 0.12	

#score	128.86546821637495
#seq	8
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_UTR_m2_run1.txt

#BEAR
hhhhhhhh[bbmmmmbb]hhhhhhhh]	chr3:169700848-169701142(+)$1	294	13	40	11.0272
f!!hhhhhhhhmmmmhhhhhhhh22ff	chr12:122992666-122992913(-)$1	247	143	170	9.1337
[eeeee[ddddmmmmdddd]eeeee]c	chr2:187368820-187369039(+)$1	219	143	170	9.5066
:eeeee[ddddmmmmddddeeeeeccc	chr22:22890177-22890430(-)$1	253	154	181	9.0821
)a[hhhhhhhhmmmmhhhhhhhh]a33	chr17:34171000-34171235(+)$1	235	171	198	9.9886
IIeeeee!!bbmmmmbb22eeeeeccc	chr16:8997030-8997358(-)$1	328	161	188	10.4780
b!!eeeee[ccclllccc22eeeee22	chr11:3023120-3023367(-)$1	247	31	58	8.9308
b[iiiiiiiiimmmmiiiiiiiii333	chr17:62498186-62498441(-)$1	255	162	189	11.4075
gggggg"""bbmmmmbb4444gggggg	chr1:68150869-68151163(+)$1	294	209	236	11.2144
bba[gggggggmmmmggggggga]bb]	chr9:127998544-127998798(-)$1	254	219	246	9.8837
ddd"""eeeeemmmmeeeee333dddd	chr12:46357788-46358061(-)$1	273	83	110	8.0825
:ccc[ccc[bbmmmmbb]ccc333ccc	chr2:238672616-238672920(+)$1	304	70	97	11.8351
d"""dddd[bbmmmmbb]dddd4444d	chr5:33467644-33467905(+)$1	261	108	135	11.0424
hh"""bb!!bbmmmmbb22bb22hhhh	chr10:17279196-17279548(+)$1	352	36	63	9.7918
dddd[ccc[bbmmmmbb]ccc]ddddF	chr11:11964381-11964703(+)$1	322	36	63	10.9120
:ggggggg[bbmmmmbb]ggggggg::	chr3:167727895-167728134(-)$1	239	191	218	10.4012
++eeeee[cccmmmmccc22eeeeebb	chr15:44063202-44063416(+)$1	214	124	151	9.3857
dd[eeeee[bboooooobbeeeeeddd	chr3:180665551-180665818(+)$1	267	190	217	8.0013

#otherMatches

#Seq PSSM
AUAGUCAGUGAAAGUUUUUUGACUGUA	chr3:169700848-169701142(+)$1	294	13	40	11.0272
GAAGGGGUAAGUUCUCUUAUUCUGCUU	chr12:122992666-122992913(-)$1	247	143	170	9.1337
CAUAAAAACUGAAAGCAGUAUUUAUUG	chr2:187368820-187369039(+)$1	219	143	170	9.5066
AAUGUGAUCUUUGGGGAGAUACAUCUU	chr22:22890177-22890430(-)$1	253	154	181	9.0821
UUGUUUACUUUGGUGAGAGUAGGGGUU	chr17:34171000-34171235(+)$1	235	171	198	9.9886
GAAAUACACUGUGUUCAAAGUAUUGAA	chr16:8997030-8997358(-)$1	328	161	188	10.4780
GGAGCCCCAGGUGCUGCUCGGGGGCAG	chr11:3023120-3023367(-)$1	247	31	58	8.9308
GUAAAUAUUUCAAAUGAAGUAUUUUUC	chr17:62498186-62498441(-)$1	255	162	189	11.4075
GCCUGUGAGUGAGUGCAGAAAGCAGGC	chr1:68150869-68151163(+)$1	294	209	236	11.2144
UGGUGUAGGAAGUUUUUUCUACCAUAA	chr9:127998544-127998798(-)$1	254	219	246	9.8837
CUUAUAGGAAACCCUUUUCCAAAGAGA	chr12:46357788-46358061(-)$1	273	83	110	8.0825
AGGAAGAGAGCCAGGGCACUUCAAUCC	chr2:238672616-238672920(+)$1	304	70	97	11.8351
UAUCGAGCGGCUACAGCAGCUCAAAGA	chr5:33467644-33467905(+)$1	261	108	135	11.0424
UCAACGAAACUUCUCAGCAUCACGAUG	chr10:17279196-17279548(+)$1	352	36	63	9.7918
UUUGUGCAAUGCAGACAAUGCUCAGAU	chr11:11964381-11964703(+)$1	322	36	63	10.9120
UUUUUUAAAACUUUUGUAUUAGAAAUG	chr3:167727895-167728134(-)$1	239	191	218	10.4012
AUUAGCUAUCUACAAAGAGAAGCUACA	chr15:44063202-44063416(+)$1	214	124	151	9.3857
UUGCUUUGUGACUAGUUUCUAAGGAAG	chr3:180665551-180665818(+)$1	267	190	217	8.0013

#DB
((((((((.((....)).)))))))).	chr3:169700848-169701142(+)$1	1	13	40	11.0272
(..((((((((....))))))))..))	chr12:122992666-122992913(-)$1	1	143	170	9.1337
.(((((.((((....)))).))))).)	chr2:187368820-187369039(+)$1	1	143	170	9.5066
.(((((.((((....)))))))))(((	chr22:22890177-22890430(-)$1	1	154	181	9.0821
.(.((((((((....)))))))).)..	chr17:34171000-34171235(+)$1	1	171	198	9.9886
))(((((..((....))..)))))(((	chr16:8997030-8997358(-)$1	1	161	188	10.4780
(..(((((.(((...)))..)))))..	chr11:3023120-3023367(-)$1	1	31	58	8.9308
(.(((((((((....)))))))))...	chr17:62498186-62498441(-)$1	1	162	189	11.4075
((((((...((....))....))))))	chr1:68150869-68151163(+)$1	1	209	236	11.2144
(((.(((((((....)))))))).)).	chr9:127998544-127998798(-)$1	1	219	246	9.8837
(((...(((((....)))))...))))	chr12:46357788-46358061(-)$1	1	83	110	8.0825
.(((.(((.((....)).)))...)))	chr2:238672616-238672920(+)$1	1	70	97	11.8351
(...((((.((....)).))))....)	chr5:33467644-33467905(+)$1	1	108	135	11.0424
((...((..((....))..))..))))	chr10:17279196-17279548(+)$1	1	36	63	9.7918
((((.(((.((....)).))).))))(	chr11:11964381-11964703(+)$1	1	36	63	10.9120
.(((((((.((....)).)))))))..	chr3:167727895-167728134(-)$1	1	191	218	10.4012
..(((((.(((....)))..)))))))	chr15:44063202-44063416(+)$1	1	124	151	9.3857
((.(((((.((......))))))))))	chr3:180665551-180665818(+)$1	1	190	217	8.0013

#PSSM
d : 0.22	: : 0.16	b : 0.16	h : 0.11	f : 0.05	[ : 0.05	) : 0.05	I : 0.05	g : 0.05	+ : 0.05	
d : 0.16	h : 0.11	! : 0.11	e : 0.11	g : 0.11	a : 0.05	I : 0.05	[ : 0.05	b : 0.05	c : 0.05	" : 0.05	+ : 0.05	
e : 0.22	! : 0.11	[ : 0.11	g : 0.11	d : 0.11	" : 0.11	h : 0.05	i : 0.05	a : 0.05	c : 0.05	
e : 0.33	h : 0.16	" : 0.16	g : 0.11	i : 0.05	[ : 0.05	c : 0.05	d : 0.05	
e : 0.33	h : 0.16	g : 0.16	" : 0.11	[ : 0.11	i : 0.05	d : 0.05	
e : 0.33	h : 0.16	g : 0.16	c : 0.11	i : 0.05	" : 0.05	d : 0.05	b : 0.05	
e : 0.27	h : 0.16	[ : 0.11	g : 0.11	c : 0.11	i : 0.05	" : 0.05	d : 0.05	b : 0.05	
h : 0.16	d : 0.16	e : 0.16	! : 0.11	g : 0.11	c : 0.11	i : 0.05	" : 0.05	[ : 0.05	
[ : 0.38	h : 0.11	d : 0.11	! : 0.11	i : 0.05	" : 0.05	g : 0.05	e : 0.05	c : 0.05	
b : 0.50	h : 0.11	d : 0.11	c : 0.11	i : 0.05	g : 0.05	e : 0.05	
b : 0.50	h : 0.11	d : 0.11	c : 0.11	i : 0.05	g : 0.05	e : 0.05	
m : 0.88	c : 0.05	o : 0.05	
m : 0.88	l : 0.05	o : 0.05	
m : 0.88	l : 0.05	o : 0.05	
m : 0.88	l : 0.05	o : 0.05	
b : 0.44	h : 0.11	d : 0.11	c : 0.11	i : 0.05	g : 0.05	e : 0.05	o : 0.05	
b : 0.44	h : 0.11	d : 0.11	c : 0.11	i : 0.05	g : 0.05	e : 0.05	o : 0.05	
] : 0.27	h : 0.11	d : 0.11	2 : 0.11	c : 0.11	i : 0.05	4 : 0.05	g : 0.05	e : 0.05	b : 0.05	
2 : 0.22	h : 0.16	d : 0.16	g : 0.11	c : 0.11	i : 0.05	4 : 0.05	e : 0.05	b : 0.05	
e : 0.22	h : 0.16	2 : 0.11	g : 0.11	c : 0.11	] : 0.05	i : 0.05	4 : 0.05	d : 0.05	b : 0.05	
e : 0.33	h : 0.16	g : 0.11	c : 0.11	i : 0.05	4 : 0.05	3 : 0.05	d : 0.05	b : 0.05	
e : 0.33	h : 0.16	g : 0.16	3 : 0.11	i : 0.05	d : 0.05	2 : 0.05	] : 0.05	
e : 0.33	h : 0.16	g : 0.11	3 : 0.11	i : 0.05	a : 0.05	4 : 0.05	2 : 0.05	d : 0.05	
e : 0.33	h : 0.11	] : 0.11	g : 0.11	d : 0.11	2 : 0.05	i : 0.05	3 : 0.05	4 : 0.05	
e : 0.16	c : 0.16	d : 0.16	h : 0.11	g : 0.11	2 : 0.05	a : 0.05	3 : 0.05	b : 0.05	4 : 0.05	
c : 0.16	d : 0.16	h : 0.11	3 : 0.11	b : 0.11	f : 0.05	] : 0.05	2 : 0.05	g : 0.05	4 : 0.05	: : 0.05	
c : 0.22	d : 0.16	] : 0.11	3 : 0.11	f : 0.05	2 : 0.05	g : 0.05	h : 0.05	F : 0.05	: : 0.05	b : 0.05	

#score	180.1055027828667
#seq	18
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_CDS_m2_run1.txt

#BEAR
fffffeeeeennnnneeeee22ff	chr17:17206807-17207087(+)$1	280	199	223	9.8764
dd####ddddnnnnndddd4444d	chr3:52514258-52514537(+)$1	279	86	110	11.4274
=========[allla]========	chr3:47040270-47040595(+)$1	325	178	202	9.2074
=!!bb!!cccnnnnnccc22bb22	chr16:87426027-87426323(+)$1	296	226	250	12.0136
####ccc[bbnnnnnbb22ccc33	chr1:2160042-2160342(+)$1	300	153	177	11.3397
:dddd[cccooooooccc333ddd	chr19:1978314-1978537(+)$1	223	16	40	8.0179
b!!ccc[cccooooooccc]ccc2	chr1:27023211-27023444(+)$1	233	185	209	8.9104
===========lll==========	chr7:99755806-99756075(-)$1	269	146	170	9.0547
ffffffffffnnnnnffffff]ff	chr6:34857033-34857319(+)$1	286	194	218	10.0825
c!!a[bb[bbnnnnnbb]bb]a22	chr22:42229081-42229399(+)$1	318	186	210	11.1849
ffff"""cccnnnnnccc333fff	chr11:58346747-58347044(+)$1	297	13	37	13.0146
dddddd[cccnnnnnccc]dddd:	chr3:9516154-9516436(+)$1	282	14	38	10.1671
ggggg"""cccmmmmccc333ggg	chrX:20284628-20284891(-)$1	263	43	67	8.2376
dddd[ccc[annnnna]ccc]ddd	chr1:27022731-27023035(+)$1	304	47	71	11.5832
gccc[bb[bbnnnnnbb]bb]ccc	chr20:42086836-42087114(+)$1	278	135	159	11.2955
dddd[eeeeennnnneeeeedddd	chr5:179248455-179248810(+)$1	355	80	104	9.9805
fff[ffffffnnnnnffffff444	chr6:167426915-167427240(+)$1	325	268	292	10.4231
bb[bbeeeeennnnneeeee]bb]	chr11:64889014-64889274(-)$1	260	151	175	9.6117
ccccc[ddddnnnnnddddccc]c	chr1:207494929-207495405(+)$1	476	211	235	11.1118
]cccbb[cccnnnnnccc]bb:ff	chr8:145111054-145111317(-)$1	263	198	222	10.5258
ddda[ccc[annnnnaccc]a]dd	chr16:30078597-30078876(+)$1	279	210	234	12.0436
[ccc!!ddddnnnnndddd]cccg	chr3:186502108-186502318(+)$1	210	66	90	11.6032
:dddd!!cccnnnnnccc333ddd	chr9:37429559-37429840(+)$1	281	117	141	11.8719
gggggggcccnnnnnccc]ggggg	chr11:64010753-64011033(+)$1	280	158	182	12.4799
==========oooooo========	chrX:41193696-41193953(+)$1	257	220	244	9.3701
f[ccc!!cccnnnnnccc22ccc2	chr9:130160020-130160361(+)$1	341	231	255	12.7087
eeeeffffffnnnnnffffff]ee	chr6:31831359-31831674(-)$1	315	131	155	10.0530
eeeeccccccnnnnnccc]ccc]e	chr20:62373902-62374156(+)$1	254	54	78	11.8491
ggggffffffnnnnnffffff22g	chr7:121002815-121003069(-)$1	254	200	224	10.4347
===========mmmm=========	chr1:155658076-155658332(-)$1	256	140	164	7.8358
$$$$$eeeeennnnneeeee]eee	chr3:142443377-142443636(+)$1	259	95	119	9.5865
==ccceeeeennnnneeeee22cc	chr5:140048552-140048803(+)$1	251	138	162	10.6469
cc[cccddddnnnnndddd333cc	chr19:2270402-2270678(+)$1	276	28	52	11.8190
ff$$$$$cccnnnnnccc]fffff	chr19:39880696-39880991(-)$1	295	262	286	11.2783
c[ffffff[annnnna]ffffffc	chr17:72768084-72768404(-)$1	320	40	64	10.6372
==========nnnnn=========	chr7:104713967-104714240(+)$1	273	197	221	12.8980
!!ddddddddnnnnndddd22ddd	chr12:56740569-56740892(-)$1	323	32	56	10.5565
dddd[bb[bbnnnnnbb]bb]ddd	chr6:37138728-37139031(+)$1	303	245	269	10.6593
ee[bb"""bbnnnnnbb333bb]e	chr5:138629672-138630031(+)$1	359	107	131	11.5412
dddd[a[cccnnnnnccca]dddd	chr8:145113459-145113696(-)$1	237	190	214	12.0778
ggggg!!cccnnnnnccc22gggg	chr11:116968845-116969119(-)$1	274	200	224	12.9024
bbb!!bb[bbnnnnnbbbb22bb]	chr7:150777692-150777916(-)$1	224	101	125	10.2961
ggggggg!!ccclllccc333ggg	chr15:80215333-80215694(-)$1	361	108	132	8.7710
c"""bb[cccnnnnnccc]bb333	chr7:99755907-99756179(-)$1	272	172	196	12.1102
ggggggg[bbnnnnnbb]gggggg	chr19:15514387-15514677(-)$1	290	38	62	11.6952
bbb!!bb[bbnnnnnbbbb22bb]	chr7:150777716-150777953(-)$1	237	138	162	10.2961
dddd!!ddddnnnnndddd]dddd	chr3:52567608-52567895(-)$1	287	29	53	10.7858
hhhh[ccc[annnnna]ccc]hhh	chr17:30264286-30264565(+)$1	279	121	145	10.7950
ccc####bboooooobb4444ccc	chr12:132588888-132589160(+)$1	272	2	26	8.6414
fffff[a[bbnnnnnbb]afffff	chr17:80050578-80050848(-)$1	270	129	153	10.8744
!!a[bbddddnnnnndddd]bb]a	chrX:153678062-153678352(+)$1	290	210	234	10.5920
eeee"""cccooooooccc22eee	chr19:2270509-2270778(+)$1	269	18	42	8.7187

#otherMatches

#Seq PSSM
ACUUCGAGGGCGGAUUCCUCAGGA	chr17:17206807-17207087(+)$1	280	199	223	9.8764
CACACAGCCCUGCCUGGGCCCCCU	chr3:52514258-52514537(+)$1	279	86	110	11.4274
GCGGUGGGUGCGCUGGACCUGCUG	chr3:47040270-47040595(+)$1	325	178	202	9.2074
ggaccgagccgggagggccagggg	chr16:87426027-87426323(+)$1	296	226	250	12.0136
ggagcgCACCAUGGAGGCGGCGGC	chr1:2160042-2160342(+)$1	300	153	177	11.3397
UGGCUAUCAAAUUGGUGAGUCGGC	chr19:1978314-1978537(+)$1	223	16	40	8.0179
UCUUCCACCAACAACAUGGCGGAC	chr1:27023211-27023444(+)$1	233	185	209	8.9104
GCUUGGGCUCCAGAGGAGCCUGGG	chr7:99755806-99756075(-)$1	269	146	170	9.0547
CCGGCGGUGGAGAAGCUGCUGUCC	chr6:34857033-34857319(+)$1	286	194	218	10.0825
CCGGGCGAUGGACGACAGCGGCGA	chr22:42229081-42229399(+)$1	318	186	210	11.1849
GGGGAGACGGAAGAGCCGAGACCC	chr11:58346747-58347044(+)$1	297	13	37	13.0146
AGGGAGCAUCCCCAAGGUCCUCCG	chr3:9516154-9516436(+)$1	282	14	38	10.1671
ccgccgcugccgUGGGGCUCgggc	chrX:20284628-20284891(-)$1	263	43	67	8.2376
gcccgcccgggcggguggggaggg	chr1:27022731-27023035(+)$1	304	47	71	11.5832
CGGUUGUCCGGCCCUCGCACCGCC	chr20:42086836-42087114(+)$1	278	135	159	11.2955
ACCUUGCUGCGCCAGGUGGUGGGU	chr5:179248455-179248810(+)$1	355	80	104	9.9805
gggcuagguggcucacgccuguaa	chr6:167426915-167427240(+)$1	325	268	292	10.4231
CCUGUAGGCUCAUGUAGCCUCACU	chr11:64889014-64889274(-)$1	260	151	175	9.6117
GCGCUGCCCCUCCUCGGGGAGCUG	chr1:207494929-207495405(+)$1	476	211	235	11.1118
UGUACCUGCUGGCAGAGCUGGGCU	chr8:145111054-145111317(-)$1	263	198	222	10.5258
GAACACCGAGGAGAACCGGCGCUU	chr16:30078597-30078876(+)$1	279	210	234	12.0436
GAGGUGGCCUGGAAGGGGUGUCUG	chr3:186502108-186502318(+)$1	210	66	90	11.6032
GUCCCUACCCUUUGCGGGACUGGG	chr9:37429559-37429840(+)$1	281	117	141	11.8719
UCUUCCUGCAGGAUGUGUGAGGGG	chr11:64010753-64011033(+)$1	280	158	182	12.4799
GAGGCCCUUUUGGCUUGGAGGGCU	chrX:41193696-41193953(+)$1	257	220	244	9.3701
CAAGCUGAGCCUCUUGCUGUGCUC	chr9:130160020-130160361(+)$1	341	231	255	12.7087
GUCUCUGUUGCGGCUCAGUGGAAG	chr6:31831359-31831674(-)$1	315	131	155	10.0530
CGUGUCUACCAGGUGGGUGAGGCC	chr20:62373902-62374156(+)$1	254	54	78	11.8491
AUGAUGAUGCUAUUUGCGUUAGUU	chr7:121002815-121003069(-)$1	254	200	224	10.4347
UUGGGGGUGUCGCUAGGCGCCCUU	chr1:155658076-155658332(-)$1	256	140	164	7.8358
cucuuccucGCCGAACGAGGUGAU	chr3:142443377-142443636(+)$1	259	95	119	9.5865
AGUGAAGGUACCAUCUACCUCUUC	chr5:140048552-140048803(+)$1	251	138	162	10.6469
CGAGUCGGUCUGGAUGGCCCGGGA	chr19:2270402-2270678(+)$1	276	28	52	11.8190
CUACCCCUUCGACCAGAACAGGUG	chr19:39880696-39880991(-)$1	295	262	286	11.2783
GUCUUACGGUAAGAAAGUGUGAGC	chr17:72768084-72768404(-)$1	320	40	64	10.6372
UUGAGAGAAUAAACGGUUCUCUCA	chr7:104713967-104714240(+)$1	273	197	221	12.8980
gcuugguccaaagccuggauucca	chr12:56740569-56740892(-)$1	323	32	56	10.5565
GGCUCCUGGACUGGUUCGAGAGGC	chr6:37138728-37139031(+)$1	303	245	269	10.6593
GGGUGAAGAGGUGCGCUGACCGGC	chr5:138629672-138630031(+)$1	359	107	131	11.5412
GUGCGCAUCGUCCCUCGGGGGCAC	chr8:145113459-145113696(-)$1	237	190	214	12.0778
CAUCGGCAAGGGCAACUUCGCGGU	chr11:116968845-116969119(-)$1	274	200	224	12.9024
GAGACCGACUGAGGGAGCGACCUG	chr7:150777692-150777916(-)$1	224	101	125	10.2961
CGAGGAGCUGCGAGACGCCACCUU	chr15:80215333-80215694(-)$1	361	108	132	8.7710
ACUUGGGGGAGACUGUCCGUUUUC	chr7:99755907-99756179(-)$1	272	172	196	12.1102
GUCUUCUCUCUCUGUGACAGAAGA	chr19:15514387-15514677(-)$1	290	38	62	11.6952
GAGACCGACUGAGGGAGCGACCUG	chr7:150777716-150777953(-)$1	237	138	162	10.2961
GGCCGCCGUGAGGAGCACGAGGCC	chr3:52567608-52567895(-)$1	287	29	53	10.7858
GGGGUGGCAGUUACUCGGCCUCCU	chr17:30264286-30264565(+)$1	279	121	145	10.7950
ACAUUCAGGUCACGUCCCCCUUGU	chr12:132588888-132589160(+)$1	272	2	26	8.6414
GGGCUGCAGCACUGAGCCGAGCCC	chr17:80050578-80050848(-)$1	270	129	153	10.8744
AAGAGUGGUGAGUGCCGCCGACCC	chrX:153678062-153678352(+)$1	290	210	234	10.5920
GCGCACUCCGACAGCCCGGCAGCG	chr19:2270509-2270778(+)$1	269	18	42	8.7187

#DB
((((((((((.....)))))..))	chr17:17206807-17207087(+)$1	1	199	223	9.8764
((....((((.....))))....)	chr3:52514258-52514537(+)$1	1	86	110	11.4274
(((((((((.(...).))))))))	chr3:47040270-47040595(+)$1	1	178	202	9.2074
(..((..(((.....)))..))..	chr16:87426027-87426323(+)$1	1	226	250	12.0136
....(((.((.....))..)))..	chr1:2160042-2160342(+)$1	1	153	177	11.3397
.((((.(((......)))...)))	chr19:1978314-1978537(+)$1	1	16	40	8.0179
(..(((.(((......))).))).	chr1:27023211-27023444(+)$1	1	185	209	8.9104
(((((((((((...))))))))))	chr7:99755806-99756075(-)$1	1	146	170	9.0547
((((((((((.....)))))).))	chr6:34857033-34857319(+)$1	1	194	218	10.0825
(..(.((.((.....)).)).)..	chr22:42229081-42229399(+)$1	1	186	210	11.1849
((((...(((.....)))...)))	chr11:58346747-58347044(+)$1	1	13	37	13.0146
))((((.(((.....))).)))).	chr3:9516154-9516436(+)$1	1	14	38	10.1671
(((((...(((....)))...)))	chrX:20284628-20284891(-)$1	1	43	67	8.2376
((((.(((.(.....).))).)))	chr1:27022731-27023035(+)$1	1	47	71	11.5832
)(((.((.((.....)).)).)))	chr20:42086836-42087114(+)$1	1	135	159	11.2955
((((.(((((.....)))))))))	chr5:179248455-179248810(+)$1	1	80	104	9.9805
(((.((((((.....))))))...	chr6:167426915-167427240(+)$1	1	268	292	10.4231
((.(((((((.....))))).)).	chr11:64889014-64889274(-)$1	1	151	175	9.6117
(((((.((((.....))))))).)	chr1:207494929-207495405(+)$1	1	211	235	11.1118
.)))((.(((.....))).)).((	chr8:145111054-145111317(-)$1	1	198	222	10.5258
((((.(((.(.....)))).).))	chr16:30078597-30078876(+)$1	1	210	234	12.0436
.(((..((((.....)))).))))	chr3:186502108-186502318(+)$1	1	66	90	11.6032
.((((..(((.....)))...)))	chr9:37429559-37429840(+)$1	1	117	141	11.8719
((((((((((.....))).)))))	chr11:64010753-64011033(+)$1	1	158	182	12.4799
((((((((((......))))))))	chrX:41193696-41193953(+)$1	1	220	244	9.3701
(.(((..(((.....)))..))).	chr9:130160020-130160361(+)$1	1	231	255	12.7087
((((((((((.....)))))).))	chr6:31831359-31831674(-)$1	1	131	155	10.0530
((((((((((.....))).))).)	chr20:62373902-62374156(+)$1	1	54	78	11.8491
((((((((((.....))))))..)	chr7:121002815-121003069(-)$1	1	200	224	10.4347
(((((((((((....)))))))))	chr1:155658076-155658332(-)$1	1	140	164	7.8358
.....(((((.....))))).)))	chr3:142443377-142443636(+)$1	1	95	119	9.5865
((((((((((.....)))))..))	chr5:140048552-140048803(+)$1	1	138	162	10.6469
((.(((((((.....))))...))	chr19:2270402-2270678(+)$1	1	28	52	11.8190
((.....(((.....))).)))))	chr19:39880696-39880991(-)$1	1	262	286	11.2783
(.((((((.(.....).)))))))	chr17:72768084-72768404(-)$1	1	40	64	10.6372
((((((((((.....)))))))))	chr7:104713967-104714240(+)$1	1	197	221	12.8980
..((((((((.....))))..)))	chr12:56740569-56740892(-)$1	1	32	56	10.5565
((((.((.((.....)).)).)))	chr6:37138728-37139031(+)$1	1	245	269	10.6593
((.((...((.....))...)).)	chr5:138629672-138630031(+)$1	1	107	131	11.5412
((((.(.(((.....)))).))))	chr8:145113459-145113696(-)$1	1	190	214	12.0778
(((((..(((.....)))..))))	chr11:116968845-116969119(-)$1	1	200	224	12.9024
(((..((.((.....))))..)).	chr7:150777692-150777916(-)$1	1	101	125	10.2961
(((((((..(((...)))...)))	chr15:80215333-80215694(-)$1	1	108	132	8.7710
(...((.(((.....))).))...	chr7:99755907-99756179(-)$1	1	172	196	12.1102
(((((((.((.....)).))))))	chr19:15514387-15514677(-)$1	1	38	62	11.6952
(((..((.((.....))))..)).	chr7:150777716-150777953(-)$1	1	138	162	10.2961
((((..((((.....)))).))))	chr3:52567608-52567895(-)$1	1	29	53	10.7858
((((.(((.(.....).))).)))	chr17:30264286-30264565(+)$1	1	121	145	10.7950
(((....((......))....)))	chr12:132588888-132589160(+)$1	1	2	26	8.6414
(((((.(.((.....)).))))))	chr17:80050578-80050848(-)$1	1	129	153	10.8744
..(.((((((.....)))).)).)	chrX:153678062-153678352(+)$1	1	210	234	10.5920
((((...(((......)))..)))	chr19:2270509-2270778(+)$1	1	18	42	8.7187

#PSSM
d : 0.15	f : 0.13	= : 0.13	g : 0.13	c : 0.11	b : 0.07	e : 0.07	: : 0.03	! : 0.03	# : 0.01	] : 0.01	[ : 0.01	$ : 0.01	h : 0.01	
d : 0.19	f : 0.11	= : 0.11	g : 0.11	c : 0.11	! : 0.09	e : 0.07	b : 0.05	[ : 0.03	# : 0.01	$ : 0.01	" : 0.01	h : 0.01	
d : 0.19	c : 0.13	f : 0.11	g : 0.11	= : 0.09	! : 0.05	[ : 0.05	e : 0.05	# : 0.03	$ : 0.03	b : 0.03	" : 0.01	h : 0.01	a : 0.01	
d : 0.17	c : 0.15	g : 0.11	f : 0.09	= : 0.09	# : 0.05	b : 0.05	e : 0.05	a : 0.03	[ : 0.03	$ : 0.03	! : 0.03	" : 0.01	h : 0.01	
[ : 0.15	f : 0.13	c : 0.13	b : 0.11	= : 0.09	g : 0.09	d : 0.07	! : 0.07	# : 0.03	" : 0.03	$ : 0.03	
b : 0.15	c : 0.13	! : 0.11	e : 0.09	= : 0.09	f : 0.09	" : 0.07	[ : 0.05	g : 0.05	# : 0.03	d : 0.03	$ : 0.01	a : 0.01	
d : 0.13	c : 0.11	e : 0.09	= : 0.09	[ : 0.09	f : 0.09	b : 0.09	! : 0.07	" : 0.07	g : 0.05	$ : 0.01	# : 0.01	a : 0.01	
c : 0.34	[ : 0.15	d : 0.13	e : 0.09	= : 0.09	f : 0.09	" : 0.03	! : 0.01	b : 0.01	
c : 0.30	b : 0.19	d : 0.13	e : 0.09	= : 0.09	f : 0.07	[ : 0.07	! : 0.01	
c : 0.30	b : 0.17	d : 0.13	e : 0.09	= : 0.07	f : 0.07	a : 0.07	o : 0.03	[ : 0.01	
n : 0.80	o : 0.09	= : 0.03	c : 0.03	a : 0.01	
n : 0.80	o : 0.09	l : 0.03	m : 0.03	c : 0.01	
n : 0.80	o : 0.09	l : 0.05	m : 0.03	
n : 0.80	o : 0.09	l : 0.05	m : 0.03	
n : 0.80	o : 0.09	m : 0.03	a : 0.01	= : 0.01	l : 0.01	
c : 0.28	b : 0.19	d : 0.13	e : 0.09	f : 0.07	a : 0.07	o : 0.05	= : 0.05	] : 0.01	
c : 0.34	b : 0.19	d : 0.13	e : 0.09	= : 0.09	f : 0.07	] : 0.05	
c : 0.38	d : 0.13	e : 0.09	= : 0.09	f : 0.09	] : 0.09	b : 0.03	2 : 0.01	3 : 0.01	4 : 0.01	
d : 0.13	3 : 0.11	] : 0.11	e : 0.09	= : 0.09	c : 0.09	f : 0.09	b : 0.09	2 : 0.07	a : 0.03	g : 0.01	4 : 0.01	
2 : 0.13	3 : 0.13	f : 0.13	] : 0.11	e : 0.09	= : 0.09	c : 0.09	b : 0.09	4 : 0.03	g : 0.03	d : 0.01	
f : 0.13	] : 0.13	2 : 0.11	c : 0.11	3 : 0.11	= : 0.09	b : 0.09	d : 0.07	g : 0.05	4 : 0.03	a : 0.01	
d : 0.17	c : 0.15	b : 0.11	= : 0.09	g : 0.09	f : 0.07	2 : 0.05	] : 0.05	4 : 0.03	e : 0.03	3 : 0.03	a : 0.01	: : 0.01	h : 0.01	
d : 0.19	f : 0.13	c : 0.13	= : 0.09	g : 0.09	] : 0.07	2 : 0.05	b : 0.05	e : 0.05	4 : 0.03	3 : 0.03	h : 0.01	
d : 0.19	g : 0.13	f : 0.11	c : 0.11	= : 0.09	e : 0.09	2 : 0.07	] : 0.05	3 : 0.03	: : 0.01	4 : 0.01	h : 0.01	a : 0.01	

#score	555.4978872813003
#seq	52
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_transcript_m2_run2.txt

#BEAR
ddddeeeee"""cccmmmmccc333eeeee]d	chr3:197897411-197897668(+)$1	257	2	34	11.8695
ddd!!bb[bb[ddddmmmmdddd333bb]bb2	chr20:62509277-62509546(+)$1	269	10	42	12.3942
ggggggg[a!!ddddmmmmdddd22a]ggggg	chr4:1873666-1873984(+)$1	318	268	300	14.9036
ffffffiiiiiiiiimmmmiiiiiiiii333f	chr11:66408200-66408453(+)$1	253	196	228	11.1566
eeee[bb[a[a[ddddllldddd]a]abb]ee	chr7:127430073-127430319(+)$1	246	189	221	11.2535
bb[ccc####ddddnnnnndddd4444ccc]b	chr21:44264162-44264450(-)$1	288	111	143	11.2446
dddd[ccc!!eeeeemmmmeeeee]ccc22dd	chr2:148720798-148721034(-)$1	236	151	183	12.6503
fffff"""cccddddmmmmdddd22ccc333f	chr3:5175960-5176184(+)$1	224	125	157	13.8690
c!!ggggggg[eeeeellleeeeeggggggg5	chr1:66009506-66009763(+)$1	257	147	179	10.7422
!ccc[dddd[eeeeemmmmeeeeedddd]ccc	chr19:55897973-55898227(+)$1	254	186	218	12.1868
ggbbffffff"""ccclllccc333ffffff]	chr21:46283241-46283475(-)$1	234	117	149	9.5826
ffffff"""eeeeennnnneeeee333fffff	chr13:113870372-113870636(+)$1	264	231	263	11.1654
ccccccddddeeeeemmmmeeeee333dddd]	chr9:140634185-140634523(+)$1	338	262	294	12.3930
::iiiiiiiiiddddmmmmdddd22iiiiiii	chr19:30490433-30490692(+)$1	259	3	35	11.8148
eeeee[ccc[eeeeemmmmeeeee]ccc22ee	chr10:35688051-35688317(+)$1	266	11	43	12.9646
!!a[dddd"""ddddmmmmdddddddda]ccc	chr17:80224043-80224294(-)$1	251	154	186	12.9694
eeeeeccc!!eeeeemmmmeeeee22ccc22e	chr5:1621770-1622048(-)$1	278	45	77	13.2145
[a[ffffff[eeeeemmmmeeeee333fffff	chr16:89513813-89514078(-)$1	265	5	37	13.7784
eeee!!ccc[eeeeemmmmeeeee]ccc]eee	chr21:37692583-37692833(+)$1	250	110	142	13.1747
bbffffff[a[ddddmmmmdddd]a]ffffff	chr6:84615558-84615835(+)$1	277	217	249	13.1656
:eeeee!!a!!ddddllldddd22a22eeeee	chr8:145149985-145150240(+)$1	255	0	32	11.0950
ccc[eeeee!!ddddnnnnndddd]eeeee]c	chr5:866113-866443(-)$1	330	254	286	10.7683
ffff[ffffff[cccmmmmccc333ffffff]	chr1:230217736-230218015(+)$1	279	126	158	11.5101
==[bb[bbcccddddmmmmdddd]ccc]bb22	chr19:1409605-1409866(+)$1	261	121	153	11.4167
===========[cccmmmmccc==========	chr16:1360679-1360915(+)$1	236	190	222	12.4542
[bb[eeeee!!ddddmmmmdddd333eeeeeb	chr4:79698110-79698372(+)$1	262	103	135	13.9618
$$$$$dddd!!ddddmmmmdddd]dddd22ff	chr1:113934489-113934741(+)$1	252	7	39	11.6691
cc[gggggggddddnnnnndddd]ggggggg]	chr7:157207296-157207598(+)$1	302	245	277	10.9602
ff:eeeee!!addddmmmmdddd]a22eeeee	chr20:60762052-60762342(+)$1	290	125	157	12.4822
fffffdddd"""ddddllldddd4444dddd3	chr16:89492767-89492989(-)$1	222	120	152	11.8012
!eeeee####eeeeemmmmeeeeeeeeee22e	chr10:1051320-1051580(+)$1	260	114	146	12.8719
dd[ccc!!ccc[cccmmmmccc333ccc22cc	chr8:97696629-97696900(+)$1	271	53	85	12.2003
eee!!eeeee[ddddmmmmddddeeeee]eee	chr9:101867464-101867740(+)$1	276	19	51	12.6163
i[dddd!!bb[ddddmmmmdddd]bbdddd]i	chr9:140512683-140513121(-)$1	438	310	342	11.7354
hhffffff!!eeeeemmmmeeeee]ffffff:	chr1:185285436-185285717(-)$1	281	81	113	11.8887
cc[eeeee!!ddddnnnnndddd22eeeeecc	chr4:151922564-151922820(-)$1	256	170	202	11.1915
!ggggggg!!eeeeemmmmeeeeeggggggg2	chr22:20071200-20071421(+)$1	221	5	37	13.5096
c!!cccdddd[ddddmmmmdddd]dddd]ccc	chr7:149971899-149972165(-)$1	266	70	102	12.6002
eeeee[bb"""ddddmmmmdddd4444bb22e	chr5:1624387-1624682(-)$1	295	68	100	13.6845
b!!eeeee"""ddddmmmmdddd333eeeee3	chr21:38776266-38776510(+)$1	244	86	118	14.8645
gggggg[a!!eeeeemmmmeeeee4444a]gg	chr3:43733818-43734083(+)$1	265	138	170	14.1100
!ccc[bb[ccc[cccmmmmccc]cccbbcccd	chr22:50178594-50178842(-)$1	248	53	85	10.1907
ccc!!bb[ccceeeeellleeeee]ccc]bb2	chr17:76820969-76821229(-)$1	260	172	204	10.3564
!dddd$$$$$eeeeemmmmeeeeedddd]ggg	chr17:20927575-20927826(-)$1	251	17	49	11.5485
======="""eeeeemmmmeeeee>>>>>>>>	chr2:160125803-160126095(-)$1	292	204	236	12.3622
ffffff####eeeeemmmmeeeeeffffff]c	chrX:44767203-44767446(+)$1	243	192	224	13.0041
ddd[ggggggg[cccmmmmccc]ggggggg]d	chr17:80225266-80225501(-)$1	235	94	126	11.0768
!eeeee!!eeeeeooooooeeeee4444eeee	chr21:30672220-30672462(+)$1	242	190	222	10.8757
cc[ffffff!!ddddllldddd]ffffff]cc	chr17:47437959-47438216(-)$1	257	27	59	11.3392
fffff[a[a[eeeeellleeeeea]affffff	chr16:88996805-88997128(-)$1	323	132	164	11.4915
ffffff$$$$$ddddmmmmdddd333ffffff	chr1:70634948-70635188(-)$1	240	87	119	14.0672
eeeeedddd"""cccmmmmccc4444dddd]e	chr2:61661473-61661758(-)$1	285	167	199	11.8581
=========####ccclllccc333=======	chr9:95406551-95406853(-)$1	302	172	204	11.8521
[ffffff[eeeee[ammmma]eeeee333fff	chr14:104162513-104162781(+)$1	268	130	162	11.4664
ccggggggg!!ddddllldddd333ggggggg	chr7:5394722-5394972(-)$1	250	161	193	13.2389
cc[bb[dddd[ddddmmmmdddd333ddddbb	chr1:51233329-51233587(-)$1	258	194	226	12.6027
###ggggggg[ddddooooooddddggggggg	chr16:87475656-87476033(-)$1	377	140	172	10.5790

#otherMatches

#Seq PSSM
uggucucugcugcaguguccugaaacagagcg	chr3:197897411-197897668(+)$1	257	2	34	11.8695
GCCGAGGGCGAUGGUUUCUGCCGGGACGGCCG	chr20:62509277-62509546(+)$1	269	10	42	12.3942
GGGUGUGGGUACCCUGCUGGGGGGCUGCGCGC	chr4:1873666-1873984(+)$1	318	268	300	14.9036
ucaaaggaaaugcuuguuagagcauuuuggau	chr11:66408200-66408453(+)$1	253	196	228	11.1566
CAUCGAGUGGUGAGGCAGAGCUUGGGUUUGGG	chr7:127430073-127430319(+)$1	246	189	221	11.2535
gucucuuccccugccuccugcagucccaggua	chr21:44264162-44264450(-)$1	288	111	143	11.2446
ugggaaguaggagcaggguugcucgacuggcc	chr2:148720798-148721034(-)$1	236	151	183	12.6503
AUUCGUUUGCAGGCUGGGAAGCCUUUGCUGUC	chr3:5175960-5176184(+)$1	224	125	157	13.8690
aaauuuaaaguaguuuuuaaaauucuuuaaag	chr1:66009506-66009763(+)$1	257	147	179	10.7422
CGGCGGGCAUcccuggcgccaggguguugguc	chr19:55897973-55898227(+)$1	254	186	218	12.1868
UUGCCCUACAGUAGCUCCAGGCGUGUGUGGGU	chr21:46283241-46283475(-)$1	234	117	149	9.5826
GUGAGCAUUUUGUUUAAGUAGCAGUGAGUUCA	chr13:113870372-113870636(+)$1	264	231	263	11.1654
UGGCAGAGUUGUGGUGGUGACCACGCAGACUG	chr9:140634185-140634523(+)$1	338	262	294	12.3930
cugagaaaucugauaaucuuguugaagauuuc	chr19:30490433-30490692(+)$1	259	3	35	11.8148
CACAUUUUAUAAAGUUCCUGCUUUUUAACCAU	chr10:35688051-35688317(+)$1	266	11	43	12.9646
CUGUGGCUAUUGGGUAAAAACCUAGCCCUUCC	chr17:80224043-80224294(-)$1	251	154	186	12.9694
gaccuggagaggagcugauguucuaguuugag	chr5:1621770-1622048(-)$1	278	45	77	13.2145
GUGUUCUUAGGGCCAAAGGUGGCUGUGUAGGA	chr16:89513813-89514078(-)$1	265	5	37	13.7784
ggccgacgcggcggcgggggcugcggcggggc	chr21:37692583-37692833(+)$1	250	110	142	13.1747
caugguaggcaggggcaauccccaggcuauca	chr6:84615558-84615835(+)$1	277	217	249	13.1656
GCGCGGAGGAGGCCAAGAUGGCGGCAGCUGCG	chr8:145149985-145150240(+)$1	255	0	32	11.0950
AGGAGUGGGCUGGGAGCUCAUCCUUUCCACCU	chr5:866113-866443(-)$1	330	254	286	10.7683
GGUGCAGAGGCACCUGGUGAGGCAGGCUUUUC	chr1:230217736-230218015(+)$1	279	126	158	11.5101
UGGCAAGUCCCCUGCAGGUGCGGUGGGUGCCA	chr19:1409605-1409866(+)$1	261	121	153	11.4167
GGUGCAGGAGGGCCUUUAAAGGCUUCUUGUGC	chr16:1360679-1360915(+)$1	236	190	222	12.4542
AGCUCCGUUCUGCCAGCUGUGGCUCAGACGGG	chr4:79698110-79698372(+)$1	262	103	135	13.9618
GUCCAGGUGGUUCAGGUGUCUGAGUACCGAUG	chr1:113934489-113934741(+)$1	252	7	39	11.6691
CAUGUGUGAGCCACACUCAGUGGACUUGCACC	chr7:157207296-157207598(+)$1	302	245	277	10.9602
ggugguaccaccuguugauauagugaagugcc	chr20:60762052-60762342(+)$1	290	125	157	12.4822
UUGGUGUUUGUUGCUCAGGGAGCUUGUGAACU	chr16:89492767-89492989(-)$1	222	120	152	11.8012
cagggugccuguuacuccugugaugcccucug	chr10:1051320-1051580(+)$1	260	114	146	12.8719
augguggaugcagguguuagcuguggcaggua	chr8:97696629-97696900(+)$1	271	53	85	12.2003
GACCAUGGAGGCGGCGGUCGCUGCUCCGCGUC	chr9:101867464-101867740(+)$1	276	19	51	12.6163
AAGCAUGGGUGUUCUGCUAGGAGGAUGUGUCU	chr9:140512683-140513121(-)$1	438	310	342	11.7354
GUUUGGGAUUCUCUUCUGGAAGAGCUCUCGAG	chr1:185285436-185285717(-)$1	281	81	113	11.8887
agugggcugagggagacaauccccaggccccu	chr4:151922564-151922820(-)$1	256	170	202	11.1915
AUCAUGGAUUGACUCACCAGGGUCUCUAUGGG	chr22:20071200-20071421(+)$1	221	5	37	13.5096
UUUGAAUGCGUUUGGAUUUCCAGUUGCAGUUC	chr7:149971899-149972165(-)$1	266	70	102	12.6002
gacccggagacgagcugauguucuagauugag	chr5:1624387-1624682(-)$1	295	68	100	13.6845
GUGGUUCUUAGUCUUGAAGGAGGAAGGGAAUG	chr21:38776266-38776510(+)$1	244	86	118	14.8645
AAUCGUGAAAGGGUUUUAUGGCUUGGAGUGAU	chr3:43733818-43734083(+)$1	265	138	170	14.1100
AAGAGCACGUGUCCCCUCCGGGCCACUGUCUU	chr22:50178594-50178842(-)$1	248	53	85	10.1907
uaacugucaugucuucauugaggaucguugcu	chr17:76820969-76821229(-)$1	260	172	204	10.3564
ugaauauucaguugucccagcagcauuuguua	chr17:20927575-20927826(-)$1	251	17	49	11.5485
uggcuaacauggugaaaccucaucucuacuaa	chr2:160125803-160126095(-)$1	292	204	236	12.3622
GCUGCUUGAAAGGGCUUUUGUCUUGGUAGCUG	chrX:44767203-44767446(+)$1	243	192	224	13.0041
AAUGGUCACUGGCGGUGACCCGGUGGUGGCGA	chr17:80225266-80225501(-)$1	235	94	126	11.0768
UGGUGCAAGGGCUGGGCUGGGCUUGAAGGCAC	chr21:30672220-30672462(+)$1	242	190	222	10.8757
GUAGUGUUUGGGAUCUAUGAUCAAGGCAUAAU	chr17:47437959-47438216(-)$1	257	27	59	11.3392
gcccuugugucuggcuuugucagcucggggcc	chr16:88996805-88997128(-)$1	323	132	164	11.4915
gguuucuauugcaguugugacugacuggggcc	chr1:70634948-70635188(-)$1	240	87	119	14.0672
agcacaggcaugugguugcucaauuggcuugg	chr2:61661473-61661758(-)$1	285	167	199	11.8581
gggcagcugguuuucacugugauugcggcugu	chr9:95406551-95406853(-)$1	302	172	204	11.8521
GUGCCCGCGGGUGGCACGGGGCACUCUCAUGG	chr14:104162513-104162781(+)$1	268	130	162	11.4664
AGAGCACCUCAUGCCCAGGGCGGACAGGUGCU	chr7:5394722-5394972(-)$1	250	161	193	13.2389
uaugaagcuuaaucuggcaggauaugaagcuc	chr1:51233329-51233587(-)$1	258	194	226	12.6027
ucugugggguguggcuguggugccagcuccau	chr16:87475656-87476033(-)$1	377	140	172	10.5790

#DB
(((((((((...(((....)))...))))).)	chr3:197897411-197897668(+)$1	1	2	34	11.8695
(((..((.((.((((....))))...)).)).	chr20:62509277-62509546(+)$1	1	10	42	12.3942
(((((((.(..((((....))))..).)))))	chr4:1873666-1873984(+)$1	1	268	300	14.9036
(((((((((((((((....)))))))))...)	chr11:66408200-66408453(+)$1	1	196	228	11.1566
((((.((.(.(.((((...)))).).))).))	chr7:127430073-127430319(+)$1	1	189	221	11.2535
((.(((....((((.....))))....))).)	chr21:44264162-44264450(-)$1	1	111	143	11.2446
((((.(((..(((((....))))).)))..))	chr2:148720798-148721034(-)$1	1	151	183	12.6503
(((((...(((((((....))))..)))...)	chr3:5175960-5176184(+)$1	1	125	157	13.8690
(..(((((((.(((((...)))))))))))).	chr1:66009506-66009763(+)$1	1	147	179	10.7422
.(((.((((.(((((....))))))))).)))	chr19:55897973-55898227(+)$1	1	186	218	12.1868
))((((((((...(((...)))...)))))).	chr21:46283241-46283475(-)$1	1	117	149	9.5826
((((((...(((((.....)))))...)))))	chr13:113870372-113870636(+)$1	1	231	263	11.1654
(((((((((((((((....)))))...)))).	chr9:140634185-140634523(+)$1	1	262	294	12.3930
..(((((((((((((....))))..)))))))	chr19:30490433-30490692(+)$1	1	3	35	11.8148
(((((.(((.(((((....))))).)))..))	chr10:35688051-35688317(+)$1	1	11	43	12.9646
..(.((((...((((....))))))))).)))	chr17:80224043-80224294(-)$1	1	154	186	12.9694
((((((((..(((((....)))))..)))..)	chr5:1621770-1622048(-)$1	1	45	77	13.2145
.(.((((((.(((((....)))))...)))))	chr16:89513813-89514078(-)$1	1	5	37	13.7784
((((..(((.(((((....))))).))).)))	chr21:37692583-37692833(+)$1	1	110	142	13.1747
((((((((.(.((((....)))).).))))))	chr6:84615558-84615835(+)$1	1	217	249	13.1656
.(((((..(..((((...))))..)..)))))	chr8:145149985-145150240(+)$1	1	0	32	11.0950
(((.(((((..((((.....)))).))))).)	chr5:866113-866443(-)$1	1	254	286	10.7683
((((.((((((.(((....)))...)))))).	chr1:230217736-230218015(+)$1	1	126	158	11.5101
((.((.(((((((((....)))).))).))..	chr19:1409605-1409866(+)$1	1	121	153	11.4167
(((((((((((.(((....)))))))))))))	chr16:1360679-1360915(+)$1	1	190	222	12.4542
.((.(((((..((((....))))...))))))	chr4:79698110-79698372(+)$1	1	103	135	13.9618
.....((((..((((....)))).))))..))	chr1:113934489-113934741(+)$1	1	7	39	11.6691
((.(((((((((((.....)))).))))))).	chr7:157207296-157207598(+)$1	1	245	277	10.9602
)).(((((..(((((....)))).)..)))))	chr20:60762052-60762342(+)$1	1	125	157	12.4822
(((((((((...((((...))))....)))).	chr16:89492767-89492989(-)$1	1	120	152	11.8012
.(((((....(((((....))))))))))..)	chr10:1051320-1051580(+)$1	1	114	146	12.8719
((.(((..(((.(((....)))...)))..))	chr8:97696629-97696900(+)$1	1	53	85	12.2003
(((..(((((.((((....))))))))).)))	chr9:101867464-101867740(+)$1	1	19	51	12.6163
(.((((..((.((((....)))).)))))).)	chr9:140512683-140513121(-)$1	1	310	342	11.7354
))((((((..(((((....))))).)))))).	chr1:185285436-185285717(-)$1	1	81	113	11.8887
((.(((((..((((.....))))..)))))))	chr4:151922564-151922820(-)$1	1	170	202	11.1915
.(((((((..(((((....)))))))))))).	chr22:20071200-20071421(+)$1	1	5	37	13.5096
(..(((((((.((((....)))).)))).)))	chr7:149971899-149972165(-)$1	1	70	102	12.6002
(((((.((...((((....))))....))..)	chr5:1624387-1624682(-)$1	1	68	100	13.6845
(..(((((...((((....))))...))))).	chr21:38776266-38776510(+)$1	1	86	118	14.8645
((((((.(..(((((....)))))....).))	chr3:43733818-43734083(+)$1	1	138	170	14.1100
.(((.((.(((.(((....))).)))))))))	chr22:50178594-50178842(-)$1	1	53	85	10.1907
(((..((.((((((((...))))).))).)).	chr17:76820969-76821229(-)$1	1	172	204	10.3564
.((((.....(((((....))))))))).)))	chr17:20927575-20927826(-)$1	1	17	49	11.5485
(((((((...(((((....)))))........	chr2:160125803-160126095(-)$1	1	204	236	12.3622
((((((....(((((....))))))))))).)	chrX:44767203-44767446(+)$1	1	192	224	13.0041
(((.(((((((.(((....))).))))))).)	chr17:80225266-80225501(-)$1	1	94	126	11.0768
.(((((..(((((......)))))....))))	chr21:30672220-30672462(+)$1	1	190	222	10.8757
((.((((((..((((...)))).)))))).))	chr17:47437959-47438216(-)$1	1	27	59	11.3392
(((((.(.(.(((((...)))))).)))))))	chr16:88996805-88997128(-)$1	1	132	164	11.4915
((((((.....((((....))))...))))))	chr1:70634948-70635188(-)$1	1	87	119	14.0672
(((((((((...(((....)))....)))).)	chr2:61661473-61661758(-)$1	1	167	199	11.8581
(((((((((....(((...)))...)))))))	chr9:95406551-95406853(-)$1	1	172	204	11.8521
.((((((.(((((.(....).)))))...)))	chr14:104162513-104162781(+)$1	1	130	162	11.4664
))(((((((..((((...))))...)))))))	chr7:5394722-5394972(-)$1	1	161	193	13.2389
((.((.((((.((((....))))...))))))	chr1:51233329-51233587(-)$1	1	194	226	12.6027
...(((((((.((((......)))))))))))	chr16:87475656-87476033(-)$1	1	140	172	10.5790

#PSSM
c : 0.17	f : 0.15	e : 0.12	! : 0.12	d : 0.08	= : 0.07	g : 0.05	b : 0.05	[ : 0.05	: : 0.03	$ : 0.01	i : 0.01	h : 0.01	# : 0.01	
f : 0.17	e : 0.17	c : 0.17	d : 0.10	g : 0.07	! : 0.07	= : 0.07	b : 0.05	: : 0.01	a : 0.01	$ : 0.01	[ : 0.01	h : 0.01	# : 0.01	
f : 0.19	e : 0.17	[ : 0.14	d : 0.10	c : 0.08	g : 0.07	! : 0.05	= : 0.05	b : 0.03	i : 0.01	a : 0.01	$ : 0.01	: : 0.01	# : 0.01	
f : 0.22	e : 0.21	g : 0.12	c : 0.10	d : 0.07	[ : 0.07	! : 0.05	b : 0.05	= : 0.05	i : 0.01	$ : 0.01	
e : 0.22	f : 0.22	g : 0.14	[ : 0.08	! : 0.07	c : 0.07	d : 0.05	= : 0.05	b : 0.03	i : 0.01	$ : 0.01	
f : 0.19	e : 0.17	g : 0.14	c : 0.10	d : 0.10	[ : 0.08	b : 0.07	= : 0.05	" : 0.01	i : 0.01	! : 0.01	$ : 0.01	
d : 0.14	e : 0.12	g : 0.12	f : 0.12	b : 0.10	c : 0.07	! : 0.07	# : 0.05	= : 0.05	i : 0.03	" : 0.03	$ : 0.03	[ : 0.01	a : 0.01	
d : 0.14	e : 0.12	[ : 0.12	g : 0.10	f : 0.10	c : 0.07	! : 0.07	# : 0.05	" : 0.05	i : 0.03	b : 0.03	= : 0.03	$ : 0.03	a : 0.01	
! : 0.12	c : 0.12	d : 0.12	e : 0.10	g : 0.08	" : 0.08	a : 0.07	f : 0.07	# : 0.05	b : 0.03	i : 0.03	= : 0.03	$ : 0.03	[ : 0.01	
! : 0.24	" : 0.12	[ : 0.10	c : 0.08	# : 0.07	g : 0.07	e : 0.07	d : 0.05	b : 0.03	i : 0.03	f : 0.03	$ : 0.03	a : 0.01	= : 0.01	
e : 0.31	[ : 0.14	" : 0.12	! : 0.12	c : 0.08	d : 0.05	i : 0.03	a : 0.03	f : 0.01	= : 0.01	g : 0.01	$ : 0.01	# : 0.01	
d : 0.43	e : 0.35	[ : 0.10	" : 0.07	i : 0.01	# : 0.01	
d : 0.47	e : 0.35	c : 0.12	i : 0.01	" : 0.01	# : 0.01	
d : 0.47	e : 0.31	c : 0.15	i : 0.01	o : 0.01	[ : 0.01	
d : 0.42	e : 0.29	c : 0.15	n : 0.07	i : 0.01	o : 0.01	a : 0.01	
m : 0.70	n : 0.08	l : 0.07	d : 0.03	e : 0.03	c : 0.03	o : 0.03	
m : 0.70	l : 0.17	n : 0.08	o : 0.03	
m : 0.70	l : 0.17	n : 0.08	o : 0.03	
m : 0.70	l : 0.10	n : 0.08	d : 0.05	o : 0.03	e : 0.01	
d : 0.43	e : 0.33	c : 0.15	i : 0.01	n : 0.01	a : 0.01	o : 0.01	
d : 0.45	e : 0.33	c : 0.15	i : 0.01	] : 0.01	o : 0.01	
d : 0.47	e : 0.35	c : 0.15	i : 0.01	
d : 0.42	e : 0.35	3 : 0.10	] : 0.05	i : 0.01	2 : 0.01	= : 0.01	4 : 0.01	
e : 0.35	3 : 0.19	] : 0.14	2 : 0.08	4 : 0.07	d : 0.05	i : 0.01	= : 0.01	c : 0.01	g : 0.01	f : 0.01	a : 0.01	
3 : 0.24	] : 0.12	4 : 0.10	d : 0.10	2 : 0.08	a : 0.07	g : 0.07	e : 0.05	c : 0.03	f : 0.03	i : 0.01	= : 0.01	b : 0.01	> : 0.01	
3 : 0.14	c : 0.14	e : 0.10	4 : 0.10	g : 0.10	d : 0.08	f : 0.08	2 : 0.05	a : 0.03	i : 0.03	] : 0.03	= : 0.03	b : 0.01	> : 0.01	
c : 0.14	d : 0.14	f : 0.14	e : 0.12	g : 0.10	4 : 0.08	3 : 0.07	b : 0.03	i : 0.03	2 : 0.03	= : 0.03	] : 0.01	a : 0.01	> : 0.01	
f : 0.17	e : 0.15	d : 0.15	c : 0.14	g : 0.12	b : 0.07	i : 0.03	= : 0.03	4 : 0.03	a : 0.01	] : 0.01	> : 0.01	3 : 0.01	
f : 0.17	e : 0.15	] : 0.14	g : 0.12	d : 0.08	2 : 0.07	3 : 0.05	b : 0.05	c : 0.05	= : 0.03	i : 0.01	a : 0.01	> : 0.01	
e : 0.17	f : 0.17	g : 0.14	2 : 0.12	c : 0.08	d : 0.08	b : 0.05	] : 0.05	3 : 0.03	= : 0.03	i : 0.01	> : 0.01	
f : 0.17	e : 0.15	g : 0.14	] : 0.12	c : 0.12	2 : 0.07	b : 0.05	d : 0.05	3 : 0.03	= : 0.03	i : 0.01	> : 0.01	
e : 0.19	f : 0.15	c : 0.14	g : 0.08	d : 0.07	2 : 0.07	] : 0.07	b : 0.05	i : 0.03	= : 0.03	3 : 0.03	5 : 0.01	: : 0.01	> : 0.01	

#score	693.7971220126893
#seq	57
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_UTR_m3_run2.txt

#BEAR
gggg[fffffflllffffffgg	chr7:99162199-99162459(+)$1	260	176	198	7.0391
==========mmmm========	chr9:134133373-134133620(-)$1	247	179	201	10.5999
=========lll==========	chr17:57281187-57281416(+)$1	229	184	206	11.7564
hhhhhhcccnnnnnccc333hh	chr5:917850-918218(+)$1	368	19	41	9.0639
ff[bbddddnnnnndddd]bb3	chr1:155885159-155885383(-)$1	224	177	199	7.6192
hhhhhhh[annnnna]hhhhhh	chr1:241796464-241796727(-)$1	263	77	99	8.0499
##gggggggnnnnngggggggg	chr4:79835998-79836229(+)$1	231	132	154	10.6940
ggggggccclllccc]gggggg	chr22:19428900-19429140(-)$1	240	125	147	9.2093
iiii"""ddddllldddd]iii	chr1:192989370-192989667(-)$1	297	253	275	8.4946
=[ccc[ddddllldddd]ccc5	chr6:7283182-7283409(-)$1	227	181	203	7.2135
b!!gggggggmmmmggggggg2	chr1:241796403-241796645(-)$1	242	111	133	8.1178
=========nnnnn========	chr7:99919236-99919519(-)$1	283	144	166	12.6914
=====!!cccmmmmccc22===	chr1:241793093-241793333(-)$1	240	71	93	8.8985
eeeee!!bbnnnnnbb]eeeee	chrX:135956575-135956803(-)$1	228	26	48	7.4341
b[ggggggglllggggggg]bb	chr16:89017732-89018016(-)$1	284	97	119	8.6202
iiiiiiiiimmmmiiiiiiiii	chr8:23429670-23429910(+)$1	240	212	234	9.9689
d[ccceeeeellleeeee]ccc	chr5:40826123-40826381(-)$1	258	125	147	7.1095
cc####cccnnnnnccc4444c	chr5:86687606-86687879(-)$1	273	94	116	9.0406
iiiiiiiii4444cccffffff	chr15:83697324-83697635(-)$1	311	86	108	7.4797
=[gggggggnnnnnggggggg4	chr4:762434-762675(-)$1	241	165	187	11.2318
=========lll==========	chr7:26229492-26229759(-)$1	267	29	51	11.7564
eccc[ddddnnnnnddddccc:	chr1:155885120-155885359(-)$1	239	153	175	7.3646
=========nnnnn========	chr20:57486083-57486332(+)$1	249	220	242	12.6914
ffffff[bbnnnnnbbffffff	chr15:34671240-34671506(-)$1	266	128	150	7.3705
iiiiiiiiillliiiiiiiii:	chr1:241792482-241792755(-)$1	273	10	32	9.8555
========oooooo========	chr4:95585567-95585840(+)$1	273	111	133	11.0709
c[iiiiiiiiillliiiiiiii	chr5:110833265-110833565(-)$1	300	147	169	10.5521

#otherMatches

#Seq PSSM
UCUAAUAGCAUAGUAUGCUAUA	chr7:99162199-99162459(+)$1	260	176	198	7.0391
UCUGAAGUGGAGAUUCACUUUG	chr9:134133373-134133620(-)$1	247	179	201	10.5999
UAUAAUGUUUAUAAUAUUGUAA	chr17:57281187-57281416(+)$1	229	184	206	11.7564
UGCUGGACAUCCCUUGUAACCC	chr5:917850-918218(+)$1	368	19	41	9.0639
ggcacgguggcucacgccugua	chr1:155885159-155885383(-)$1	224	177	199	7.6192
UUAUGUGGAUCUUUUGCAUAUA	chr1:241796464-241796727(-)$1	263	77	99	8.0499
AUUAAAAAGAUCAGCUUUUUAU	chr4:79835998-79836229(+)$1	231	132	154	10.6940
UAAUAAGUAUUUUACAUUAUUA	chr22:19428900-19429140(-)$1	240	125	147	9.2093
UUUUAAAGUUUACAAAGCAAAG	chr1:192989370-192989667(-)$1	297	253	275	8.4946
CCAUCAUCCACAGUGGAAGAUU	chr6:7283182-7283409(-)$1	227	181	203	7.2135
CUUUGCAUGAUCCUUUAUGCAC	chr1:241796403-241796645(-)$1	242	111	133	8.1178
AUAUAUUAGACAUGUUAGUAUA	chr7:99919236-99919519(-)$1	283	144	166	12.6914
AAAGCAAGCAAAGAUGUAAGUU	chr1:241793093-241793333(-)$1	240	71	93	8.8985
AGCAGAUGAGCAAAUCCCUGUU	chrX:135956575-135956803(-)$1	228	26	48	7.4341
GAUUUUUUAAUUUAAAAAAGCA	chr16:89017732-89018016(-)$1	284	97	119	8.6202
ACGGCUGGGACUCUCCAGCUGU	chr8:23429670-23429910(+)$1	240	212	234	9.9689
UUUGAACUCCUGAGGAGUGUUA	chr5:40826123-40826381(-)$1	258	125	147	7.1095
AGAAAAUAAAUAAAUUAAAUGC	chr5:86687606-86687879(-)$1	273	94	116	9.0406
UUUAUUUUAAUUCUGGGUUUau	chr15:83697324-83697635(-)$1	311	86	108	7.4797
AAAUAGAAUAAAUAAUUUUAUA	chr4:762434-762675(-)$1	241	165	187	11.2318
UUUACACAUAAAAUGUGUGAAU	chr7:26229492-26229759(-)$1	267	29	51	11.7564
ggcacgguggcucacgccugua	chr1:155885120-155885359(-)$1	239	153	175	7.3646
UUUGACUUGGUCCUUAGGUCAA	chr20:57486083-57486332(+)$1	249	220	242	12.6914
UUGUUAACAGAAUGUGUAACGG	chr15:34671240-34671506(-)$1	266	128	150	7.3705
AAUUUGAAUGGUAUUCAAAUUU	chr1:241792482-241792755(-)$1	273	10	32	9.8555
AGGAUUUUAAACAGAGAAUUUU	chr4:95585567-95585840(+)$1	273	111	133	11.0709
GCUUCUAUAGcaaugcuguagg	chr5:110833265-110833565(-)$1	300	147	169	10.5521

#DB
((((.((((((...))))))))	chr7:99162199-99162459(+)$1	1	176	198	7.0391
((((((((((....))))))))	chr9:134133373-134133620(-)$1	1	179	201	10.5999
(((((((((...))))))))))	chr17:57281187-57281416(+)$1	1	184	206	11.7564
(((((((((.....)))...))	chr5:917850-918218(+)$1	1	19	41	9.0639
((.((((((.....)))).)).	chr1:155885159-155885383(-)$1	1	177	199	7.6192
(((((((.(.....).))))))	chr1:241796464-241796727(-)$1	1	77	99	8.0499
..(((((((.....))))))))	chr4:79835998-79836229(+)$1	1	132	154	10.6940
(((((((((...))).))))))	chr22:19428900-19429140(-)$1	1	125	147	9.2093
((((...((((...)))).)))	chr1:192989370-192989667(-)$1	1	253	275	8.4946
(.(((.((((...)))).))).	chr6:7283182-7283409(-)$1	1	181	203	7.2135
(..(((((((....))))))).	chr1:241796403-241796645(-)$1	1	111	133	8.1178
(((((((((.....))))))))	chr7:99919236-99919519(-)$1	1	144	166	12.6914
(((((..(((....)))..)))	chr1:241793093-241793333(-)$1	1	71	93	8.8985
(((((..((.....)).)))))	chrX:135956575-135956803(-)$1	1	26	48	7.4341
(.(((((((...))))))).))	chr16:89017732-89018016(-)$1	1	97	119	8.6202
(((((((((....)))))))))	chr8:23429670-23429910(+)$1	1	212	234	9.9689
(.((((((((...))))).)))	chr5:40826123-40826381(-)$1	1	125	147	7.1095
((....(((.....)))....)	chr5:86687606-86687879(-)$1	1	94	116	9.0406
)))))))))....)))((((((	chr15:83697324-83697635(-)$1	1	86	108	7.4797
(.(((((((.....))))))).	chr4:762434-762675(-)$1	1	165	187	11.2318
(((((((((...))))))))))	chr7:26229492-26229759(-)$1	1	29	51	11.7564
)(((.((((.....))))))).	chr1:155885120-155885359(-)$1	1	153	175	7.3646
(((((((((.....))))))))	chr20:57486083-57486332(+)$1	1	220	242	12.6914
((((((.((.....))))))))	chr15:34671240-34671506(-)$1	1	128	150	7.3705
(((((((((...))))))))).	chr1:241792482-241792755(-)$1	1	10	32	9.8555
((((((((......))))))))	chr4:95585567-95585840(+)$1	1	111	133	11.0709
(.(((((((((...))))))))	chr5:110833265-110833565(-)$1	1	147	169	10.5521

#PSSM
= : 0.33	i : 0.14	g : 0.07	h : 0.07	f : 0.07	b : 0.07	e : 0.07	c : 0.07	# : 0.03	d : 0.03	
= : 0.25	[ : 0.18	i : 0.14	g : 0.07	h : 0.07	f : 0.07	c : 0.07	# : 0.03	! : 0.03	e : 0.03	
= : 0.25	g : 0.18	i : 0.18	c : 0.11	h : 0.07	[ : 0.03	! : 0.03	e : 0.03	# : 0.03	f : 0.03	
= : 0.25	g : 0.22	i : 0.18	c : 0.11	h : 0.07	b : 0.03	e : 0.03	# : 0.03	f : 0.03	
= : 0.25	g : 0.18	i : 0.14	[ : 0.07	h : 0.07	c : 0.07	b : 0.03	" : 0.03	e : 0.03	# : 0.03	f : 0.03	
= : 0.22	g : 0.18	i : 0.14	f : 0.07	h : 0.07	d : 0.07	! : 0.07	" : 0.03	[ : 0.03	e : 0.03	# : 0.03	
= : 0.22	g : 0.14	i : 0.14	c : 0.11	d : 0.11	! : 0.07	f : 0.03	h : 0.03	" : 0.03	e : 0.03	[ : 0.03	
= : 0.22	c : 0.14	d : 0.14	g : 0.14	i : 0.14	b : 0.07	f : 0.03	[ : 0.03	e : 0.03	
= : 0.18	c : 0.14	d : 0.14	g : 0.14	i : 0.14	b : 0.07	f : 0.03	a : 0.03	e : 0.03	o : 0.03	
n : 0.40	l : 0.18	d : 0.07	f : 0.03	= : 0.03	g : 0.03	c : 0.03	m : 0.03	e : 0.03	4 : 0.03	o : 0.03	i : 0.03	
n : 0.40	l : 0.25	m : 0.14	f : 0.03	d : 0.03	4 : 0.03	o : 0.03	i : 0.03	
n : 0.40	l : 0.37	m : 0.14	4 : 0.03	o : 0.03	
n : 0.40	l : 0.18	m : 0.14	= : 0.07	c : 0.03	g : 0.03	4 : 0.03	i : 0.03	o : 0.03	
n : 0.40	l : 0.11	m : 0.11	= : 0.07	c : 0.07	i : 0.07	d : 0.03	g : 0.03	e : 0.03	o : 0.03	
= : 0.22	c : 0.18	d : 0.14	g : 0.14	i : 0.11	b : 0.07	f : 0.03	a : 0.03	e : 0.03	
= : 0.22	c : 0.14	d : 0.14	g : 0.14	i : 0.11	] : 0.07	b : 0.07	f : 0.03	e : 0.03	
= : 0.22	g : 0.18	d : 0.14	f : 0.11	c : 0.11	i : 0.11	h : 0.03	] : 0.03	e : 0.03	
= : 0.22	g : 0.18	f : 0.11	d : 0.11	i : 0.11	e : 0.07	3 : 0.03	h : 0.03	] : 0.03	2 : 0.03	4 : 0.03	
= : 0.22	g : 0.18	f : 0.11	] : 0.11	i : 0.11	c : 0.07	3 : 0.03	h : 0.03	2 : 0.03	e : 0.03	4 : 0.03	
= : 0.25	g : 0.14	i : 0.14	f : 0.11	c : 0.11	3 : 0.03	b : 0.03	h : 0.03	e : 0.03	] : 0.03	4 : 0.03	
= : 0.25	g : 0.18	i : 0.14	c : 0.11	h : 0.07	b : 0.07	f : 0.07	e : 0.03	4 : 0.03	
= : 0.25	g : 0.11	i : 0.11	h : 0.07	c : 0.07	f : 0.07	: : 0.07	3 : 0.03	5 : 0.03	2 : 0.03	e : 0.03	b : 0.03	4 : 0.03	

#score	250.99521271027774
#seq	27
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_transcript_m2_run1.txt

#BEAR
[ccc[ddddqqqqqqqqdddd]ccc	chr17:64213262-64213501(-)$1	239	211	236	15.4499
eeeee[cccqqqqqqqqccc22eee	chr17:56082530-56082743(-)$1	213	147	172	16.8833
g$$$$$cccqqqqqqqqcccggggg	chr13:76409540-76409809(+)$1	269	155	180	15.9147
iiiiiiiiiqqqqqqqqiiiiiiii	chr17:59974216-59974554(-)$1	338	206	231	16.6640
eeee[ddddqqqqqqqqdddd]eee	chr7:143593375-143593634(-)$1	259	225	250	15.5972
ggggeeeeeqqqqqqqqeeeee]gg	chrX:30712183-30712453(+)$1	270	169	194	15.5741
###ffffffqqqqqqqqffffffgg	chr12:69658868-69659123(+)$1	255	73	98	15.2765
iii####bbqqqqqqqqbb4444ii	chr3:78970797-78971019(-)$1	222	186	211	15.8840
::gggggggqqqqqqqqggggggg:	chr21:16369823-16370066(-)$1	243	36	61	13.5179
===ffffffqqqqqqqqffffff]=	chr8:99055058-99055369(-)$1	311	236	261	15.6336
iiiiiicccqqqqqqqqccc22iii	chr2:10045693-10046012(+)$1	319	54	79	17.2186
ccbb[ddddqqqqqqqqdddd]bb]	chr2:54097081-54097397(-)$1	316	174	199	14.4650
b"""a[cccqqqqqqqqccc]a444	chr10:51576043-51576326(+)$1	283	48	73	16.7046
ee"""ddddqqqqqqqqdddd22ee	chr3:142460169-142460520(+)$1	351	152	177	15.3950
ggggggg[aqqqqqqqqa]gggggg	chr21:40670111-40670449(-)$1	338	165	190	16.5246
=======[aqqqqqqqqa]======	chr19:7153208-7153541(-)$1	333	125	150	17.0470
eeeee[cccqqqqqqqqccceeeee	chr6:128642925-128643210(-)$1	285	114	139	16.6892
bbccc[cccqqqqqqqqcccccc]b	chr3:142759610-142759967(+)$1	357	145	170	15.7286
e!!bb[cccqqqqqqqqccc]bb22	chr11:9610739-9611002(+)$1	263	96	121	15.6471
b!!ffffffqqqqqqqqffffff22	chr11:65201405-65201618(+)$1	213	135	160	14.8957
fffff!!bbqqqqqqqqbbffffff	chr12:49330596-49330882(-)$1	286	18	43	15.1369
####eeeeeqqqqqqqqeeeee444	chr5:179046434-179046651(-)$1	217	55	80	15.1760
=========qqqqqqqq========	chr9:114147881-114148186(-)$1	305	258	283	17.2134
eeeee!!bbqqqqqqqqbb22eeee	chr10:121340804-121341037(-)$1	233	9	34	15.4539
iiiiiicccqqqqqqqqccceeeee	chr1:87502730-87503040(+)$1	310	227	252	16.9271
eeee[bb[aqqqqqqqqa]bb]eee	chr6:64409812-64410195(+)$1	383	268	293	14.9639
b[gggggggqqqqqqqqggggggg]	chr3:37086498-37086868(+)$1	370	339	364	16.3802
eee[bb[bbqqqqqqqqbb333bbe	chr6:4064423-4064668(+)$1	245	174	199	14.8922
ddffffffaqqqqqqqqa]ffffff	chr20:13753673-13754034(-)$1	361	96	121	15.0192
eeeee[cccqqqqqqqqccceeeee	chr7:11104281-11104541(+)$1	260	86	111	16.6892
gggggddddqqqqqqqqdddd22gg	chr3:33437685-33437992(-)$1	307	151	176	15.5508
gg[ccc[bbqqqqqqqqbb]ccc]g	chr11:115242343-115242644(-)$1	301	42	67	15.3725
eeeee!!bbqqqqqqqqbb22eeee	chr10:121340868-121341130(-)$1	262	102	127	15.4539
gggggddddqqqqqqqqdddd333g	chr3:12353948-12354272(+)$1	324	155	180	15.9637
[ccc!!cccqqqqqqqqccc22ccc	chr6:47976090-47976351(-)$1	261	194	219	16.8141
ffffeeeeeqqqqqqqqeeeee:ee	chr12:110449496-110449877(+)$1	381	230	255	14.0532
iiiiiiiiiqqqqqqqqiiiiiiii	chr3:27473966-27474223(-)$1	257	12	37	16.6640
ccc"""cccqqqqqqqqccc66666	chrX:128580637-128580876(-)$1	239	9	34	14.3829
ii[bbddddqqqqqqqqdddd>>>>	chr20:3898857-3899084(+)$1	227	7	32	14.1831
eeeee[cccqqqqqqqqccc22eee	chr17:56082435-56082652(-)$1	217	56	81	16.8833
iiiiiicccqqqqqqqqccc]iiii	chr6:37854740-37855045(+)$1	305	228	253	17.2879
::gggggggqqqqqqqqggggggg:	chr12:66221338-66221575(+)$1	237	34	59	13.5179
ffff[ddddqqqqqqqqdddd]fff	chr1:94920615-94920881(+)$1	266	66	91	15.2780
ccc[eeeeeqqqqqqqqeeeeeccc	chr9:14805171-14805443(-)$1	272	39	64	15.1486
ee[ffffffqqqqqqqqffffffee	chr8:17844473-17844722(+)$1	249	179	204	15.4079
ffffffabbqqqqqqqqbb]a]fff	chr2:46818321-46818564(-)$1	243	100	125	15.0071
d$$$$$cccqqqqqqqqccc333dd	chr2:86840834-86841142(-)$1	308	134	159	15.7023
::gggggggqqqqqqqqggggggg:	chr16:84109559-84109849(-)$1	290	230	255	13.5179
ffffff[bbqqqqqqqqbb22ffff	chr4:39711099-39711390(+)$1	291	16	41	14.8173
!eeeeecccqqqqqqqqccc]eeee	chr10:21908105-21908505(+)$1	400	263	288	16.6119
ggg[eeeeeqqqqqqqqeeeee333	chrX:128581626-128581871(-)$1	245	170	195	15.7339
ccc[eeeeeqqqqqqqqeeeeeccc	chr16:18832072-18832402(-)$1	330	131	156	15.1486
fffff[cccqqqqqqqqcccfffff	chr10:38652458-38652717(+)$1	259	61	86	16.3008
=========qqqqqqqq========	chr10:113926421-113926682(-)$1	261	114	139	17.2134
=====[cccqqqqqqqqccc]====	chr14:36134069-36134319(-)$1	250	187	212	17.7758
%%gggggggqqqqqqqqggggggg5	chrX:27410598-27410876(-)$1	278	148	173	14.3821
eeeee[cccqqqqqqqqccc22eee	chr17:56082453-56082687(-)$1	234	91	116	16.8833
b[gggggggqqqqqqqqggggggg2	chr5:74162265-74162520(-)$1	255	116	141	16.1736
hh"""ddddqqqqqqqqddddhhhh	chr10:96332211-96332553(+)$1	342	55	80	14.3250
dddd####aqqqqqqqqa4444ddd	chr20:60756640-60756869(+)$1	229	169	194	14.6804
!ffffff[aqqqqqqqqa]ffffff	chr10:54513307-54513592(-)$1	285	56	81	15.3680
eeeee[cccqqqqqqqqccc]eeee	chr1:11084772-11085094(+)$1	322	186	211	16.8891
eeee!!cccqqqqqqqqccc22eee	chr12:54679575-54679888(+)$1	313	202	227	16.9614
iiiiiiiiiqqqqqqqqiiiiiiii	chr10:77425580-77425855(+)$1	275	35	60	16.6640

#otherMatches

#Seq PSSM
GUGGUUGUUUCUUUUUUAAUAUCCA	chr17:64213262-64213501(-)$1	239	211	236	15.4499
UGAUAAAUUGUAUUUUAAGUGAUGU	chr17:56082530-56082743(-)$1	213	147	172	16.8833
UCCAAAGACCCCAUAAUGUUGUUUU	chr13:76409540-76409809(+)$1	269	155	180	15.9147
uguuuauguaaauacacacauaggc	chr17:59974216-59974554(-)$1	338	206	231	16.6640
ugaauuguuguaaauugaacauuuu	chr7:143593375-143593634(-)$1	259	225	250	15.5972
CUUUCCUGUGCCAUGAGACAGGAAA	chrX:30712183-30712453(+)$1	270	169	194	15.5741
CAAUAUCUAAGUUCAAAUAGAUAAU	chr12:69658868-69659123(+)$1	255	73	98	15.2765
UGUUUCUGUGUCAGUGAACUUUUAC	chr3:78970797-78971019(-)$1	222	186	211	15.8840
aaaauauauuuuuucauauauauUC	chr21:16369823-16370066(-)$1	243	36	61	13.5179
AGAGUAAUAUGUGAUUUUGUUACUU	chr8:99055058-99055369(-)$1	311	236	261	15.6336
UUUCUUGUUAGACUAGAAAUGUGAG	chr2:10045693-10046012(+)$1	319	54	79	17.2186
ACCAUUCCAAUUUGAAAUGGACUGU	chr2:54097081-54097397(-)$1	316	174	199	14.4650
AUAAGGGCAAAGUCCAAUGUGUGAA	chr10:51576043-51576326(+)$1	283	48	73	16.7046
UUAACAUGUUUGUCCUUACAUUAAG	chr3:142460169-142460520(+)$1	351	152	177	15.3950
GCAUUGUGGAAGAAAGGUGAUAAUG	chr21:40670111-40670449(-)$1	338	165	190	16.5246
guaugugguguguguguggugcgug	chr19:7153208-7153541(-)$1	333	125	150	17.0470
GGUAAUGAGAGAUUGCCCUCUUGCC	chr6:128642925-128643210(-)$1	285	114	139	16.6892
ACUGUACAUGCUAUUCUGUGACACG	chr3:142759610-142759967(+)$1	357	145	170	15.7286
CUUUGAACUUUGAAGCUAGUGCAUU	chr11:9610739-9611002(+)$1	263	96	121	15.6471
caugguaagauucagcccuugccca	chr11:65201405-65201618(+)$1	213	135	160	14.8957
CAGGUAUCUUGCUCUCUAGGCCugu	chr12:49330596-49330882(-)$1	286	18	43	15.1369
AAUAGUUAUACUUUAUAAUAAUGGA	chr5:179046434-179046651(-)$1	217	55	80	15.1760
guugugggaaacaagcauuuuauaa	chr9:114147881-114148186(-)$1	305	258	283	17.2134
UUUAUAAAUGGGGGAGAGUAGGUAA	chr10:121340804-121341037(-)$1	233	9	34	15.4539
AAACAGCCAUUGAAGUUUGGUGAGU	chr1:87502730-87503040(+)$1	310	227	252	16.9271
CACAAAGCUGUCAUUUAAUCUCUGU	chr6:64409812-64410195(+)$1	383	268	293	14.9639
gguuaucuguuucuucuuagguaag	chr3:37086498-37086868(+)$1	370	339	364	16.3802
CUUUACCUGUAUUUUAUCAUUUGUA	chr6:4064423-4064668(+)$1	245	174	199	14.8922
AUAAAUUGCAUAUUUCAGACAGUUU	chr20:13753673-13754034(-)$1	361	96	121	15.0192
GUAAUUAGUAAGUUUCAACUGUUAU	chr7:11104281-11104541(+)$1	260	86	111	16.6892
UUGUCAUAUUUGUACAUGUGUAAGG	chr3:33437685-33437992(-)$1	307	151	176	15.5508
uuuaaccuauuagucuuuauguuua	chr11:115242343-115242644(-)$1	301	42	67	15.3725
UUUAUAAAUGGGGGAGAGUAGGUAA	chr10:121340868-121341130(-)$1	262	102	127	15.4539
UGGACUAUGCAGUGUAACAUAUUUG	chr3:12353948-12354272(+)$1	324	155	180	15.9637
CUGUCAAAUGUUUUUAAGUUAUACA	chr6:47976090-47976351(-)$1	261	194	219	16.8141
UGUACUUGAAAUAUCUGUCAAGCAC	chr12:110449496-110449877(+)$1	381	230	255	14.0532
AUUUUAGCAUGUUCUUUUGUUGAAA	chr3:27473966-27474223(-)$1	257	12	37	16.6640
GGUUUUAGCUUUUCUAUGUUUUAUA	chrX:128580637-128580876(-)$1	239	9	34	14.3829
UUCAGUUGCUUUUUUUUGCGAGGUU	chr20:3898857-3899084(+)$1	227	7	32	14.1831
UGAUAAAUUGUAUUUUAAGUGAUGU	chr17:56082435-56082652(-)$1	217	56	81	16.8833
UUUGCUCUUGGAUUUGAAAGCAGUG	chr6:37854740-37855045(+)$1	305	228	253	17.2879
UCGUAUUUCUGUUGUUUGAAAUGCU	chr12:66221338-66221575(+)$1	237	34	59	13.5179
UCUGCUGUAUUGGAACUUAUAUCAG	chr1:94920615-94920881(+)$1	266	66	91	15.2780
GUGCAUACUGGUUAAAAAGUAUUAC	chr9:14805171-14805443(-)$1	272	39	64	15.1486
AACUUUGCAAUGUGAAAUGUAAAUU	chr8:17844473-17844722(+)$1	249	179	204	15.4079
uugcagcugucucucuccaugccug	chr2:46818321-46818564(-)$1	243	100	125	15.0071
UAAGCUUCAAACUUAUGUGAUAAGA	chr2:86840834-86841142(-)$1	308	134	159	15.7023
UAGUAGUCGAAUUAAACUGAUUACA	chr16:84109559-84109849(-)$1	290	230	255	13.5179
ugagagagcacauucacguaacuuu	chr4:39711099-39711390(+)$1	291	16	41	14.8173
AUAUGUUAUGGUGUUGAAUGAAUAU	chr10:21908105-21908505(+)$1	400	263	288	16.6119
auuauuuuauguaccacugagggaa	chrX:128581626-128581871(-)$1	245	170	195	15.7339
UCUACUUAUUUUUUUACAUAAGAGA	chr16:18832072-18832402(-)$1	330	131	156	15.1486
CUUUGGCCAUUUUAUCCUGGUAAAG	chr10:38652458-38652717(+)$1	259	61	86	16.3008
AGUUUGCAAUUGUAUUUUUGUGAAU	chr10:113926421-113926682(-)$1	261	114	139	17.2134
AUAAAUGGAAACUUAAAUCUUUUUG	chr14:36134069-36134319(-)$1	250	187	212	17.7758
cuagggauuagcauaggaaucuuuu	chrX:27410598-27410876(-)$1	278	148	173	14.3821
UGAUAAAUUGUAUUUUAAGUGAUGU	chr17:56082453-56082687(-)$1	234	91	116	16.8833
GGCGGGGGCCGCGUGACGCCCCCGG	chr5:74162265-74162520(-)$1	255	116	141	16.1736
guaaccgguuucuucuuauugacua	chr10:96332211-96332553(+)$1	342	55	80	14.3250
UCAUUAUUCUAUCUUCUGUCAUAUG	chr20:60756640-60756869(+)$1	229	169	194	14.6804
augaaauuugugaauuaauguuuca	chr10:54513307-54513592(-)$1	285	56	81	15.3680
ACCUAAUUAGAUUAUGAUAAAUAGG	chr1:11084772-11085094(+)$1	322	186	211	16.8891
GAUUCGUGACAAUGCCUUUAAAGAU	chr12:54679575-54679888(+)$1	313	202	227	16.9614
aauugugugcccuguauuaugcaau	chr10:77425580-77425855(+)$1	275	35	60	16.6640

#DB
.(((.((((........)))).)))	chr17:64213262-64213501(-)$1	1	211	236	15.4499
(((((.(((........)))..)))	chr17:56082530-56082743(-)$1	1	147	172	16.8833
(.....(((........))))))))	chr13:76409540-76409809(+)$1	1	155	180	15.9147
(((((((((........))))))))	chr17:59974216-59974554(-)$1	1	206	231	16.6640
((((.((((........)))).)))	chr7:143593375-143593634(-)$1	1	225	250	15.5972
(((((((((........))))).))	chrX:30712183-30712453(+)$1	1	169	194	15.5741
...((((((........))))))))	chr12:69658868-69659123(+)$1	1	73	98	15.2765
(((....((........))....))	chr3:78970797-78971019(-)$1	1	186	211	15.8840
..(((((((........))))))).	chr21:16369823-16370066(-)$1	1	36	61	13.5179
(((((((((........)))))).)	chr8:99055058-99055369(-)$1	1	236	261	15.6336
(((((((((........)))..)))	chr2:10045693-10046012(+)$1	1	54	79	17.2186
((((.((((........)))).)).	chr2:54097081-54097397(-)$1	1	174	199	14.4650
(...(.(((........))).)...	chr10:51576043-51576326(+)$1	1	48	73	16.7046
((...((((........))))..))	chr3:142460169-142460520(+)$1	1	152	177	15.3950
(((((((.(........).))))))	chr21:40670111-40670449(-)$1	1	165	190	16.5246
(((((((.(........).))))))	chr19:7153208-7153541(-)$1	1	125	150	17.0470
(((((.(((........))))))))	chr6:128642925-128643210(-)$1	1	114	139	16.6892
(((((.(((........)))))).)	chr3:142759610-142759967(+)$1	1	145	170	15.7286
(..((.(((........))).))..	chr11:9610739-9611002(+)$1	1	96	121	15.6471
(..((((((........))))))..	chr11:65201405-65201618(+)$1	1	135	160	14.8957
(((((..((........))))))))	chr12:49330596-49330882(-)$1	1	18	43	15.1369
....(((((........)))))...	chr5:179046434-179046651(-)$1	1	55	80	15.1760
(((((((((........))))))))	chr9:114147881-114148186(-)$1	1	258	283	17.2134
(((((..((........))..))))	chr10:121340804-121341037(-)$1	1	9	34	15.4539
))))))(((........)))(((((	chr1:87502730-87503040(+)$1	1	227	252	16.9271
((((.((.(........).)).)))	chr6:64409812-64410195(+)$1	1	268	293	14.9639
(.(((((((........))))))).	chr3:37086498-37086868(+)$1	1	339	364	16.3802
(((.((.((........))...)))	chr6:4064423-4064668(+)$1	1	174	199	14.8922
))(((((((........).))))))	chr20:13753673-13754034(-)$1	1	96	121	15.0192
(((((.(((........))))))))	chr7:11104281-11104541(+)$1	1	86	111	16.6892
(((((((((........))))..))	chr3:33437685-33437992(-)$1	1	151	176	15.5508
((.(((.((........)).))).)	chr11:115242343-115242644(-)$1	1	42	67	15.3725
(((((..((........))..))))	chr10:121340868-121341130(-)$1	1	102	127	15.4539
(((((((((........))))...)	chr3:12353948-12354272(+)$1	1	155	180	15.9637
.(((..(((........)))..)))	chr6:47976090-47976351(-)$1	1	194	219	16.8141
))))(((((........))))).((	chr12:110449496-110449877(+)$1	1	230	255	14.0532
(((((((((........))))))))	chr3:27473966-27474223(-)$1	1	12	37	16.6640
(((...(((........))).....	chrX:128580637-128580876(-)$1	1	9	34	14.3829
((.((((((........))))....	chr20:3898857-3899084(+)$1	1	7	32	14.1831
(((((.(((........)))..)))	chr17:56082435-56082652(-)$1	1	56	81	16.8833
(((((((((........))).))))	chr6:37854740-37855045(+)$1	1	228	253	17.2879
..(((((((........))))))).	chr12:66221338-66221575(+)$1	1	34	59	13.5179
((((.((((........)))).)))	chr1:94920615-94920881(+)$1	1	66	91	15.2780
(((.(((((........))))))))	chr9:14805171-14805443(-)$1	1	39	64	15.1486
((.((((((........))))))))	chr8:17844473-17844722(+)$1	1	179	204	15.4079
(((((((((........)).).)))	chr2:46818321-46818564(-)$1	1	100	125	15.0071
(.....(((........)))...))	chr2:86840834-86841142(-)$1	1	134	159	15.7023
..(((((((........))))))).	chr16:84109559-84109849(-)$1	1	230	255	13.5179
((((((.((........))..))))	chr4:39711099-39711390(+)$1	1	16	41	14.8173
.((((((((........))).))))	chr10:21908105-21908505(+)$1	1	263	288	16.6119
(((.(((((........)))))...	chrX:128581626-128581871(-)$1	1	170	195	15.7339
(((.(((((........))))))))	chr16:18832072-18832402(-)$1	1	131	156	15.1486
(((((.(((........))))))))	chr10:38652458-38652717(+)$1	1	61	86	16.3008
(((((((((........))))))))	chr10:113926421-113926682(-)$1	1	114	139	17.2134
(((((.(((........))).))))	chr14:36134069-36134319(-)$1	1	187	212	17.7758
..(((((((........))))))).	chrX:27410598-27410876(-)$1	1	148	173	14.3821
(((((.(((........)))..)))	chr17:56082453-56082687(-)$1	1	91	116	16.8833
(.(((((((........))))))).	chr5:74162265-74162520(-)$1	1	116	141	16.1736
((...((((........))))))))	chr10:96332211-96332553(+)$1	1	55	80	14.3250
((((....(........)....)))	chr20:60756640-60756869(+)$1	1	169	194	14.6804
.((((((.(........).))))))	chr10:54513307-54513592(-)$1	1	56	81	15.3680
(((((.(((........))).))))	chr1:11084772-11085094(+)$1	1	186	211	16.8891
((((..(((........)))..)))	chr12:54679575-54679888(+)$1	1	202	227	16.9614
(((((((((........))))))))	chr10:77425580-77425855(+)$1	1	35	60	16.6640

#PSSM
e : 0.23	i : 0.12	g : 0.10	f : 0.09	= : 0.07	b : 0.07	c : 0.06	: : 0.04	d : 0.04	[ : 0.03	# : 0.03	! : 0.03	% : 0.01	h : 0.01	
e : 0.23	i : 0.12	f : 0.10	c : 0.09	g : 0.09	= : 0.07	: : 0.04	$ : 0.03	# : 0.03	! : 0.03	[ : 0.03	d : 0.03	" : 0.01	b : 0.01	% : 0.01	h : 0.01	
e : 0.20	g : 0.17	f : 0.12	i : 0.10	c : 0.09	= : 0.07	" : 0.04	[ : 0.04	$ : 0.03	# : 0.03	! : 0.03	b : 0.01	d : 0.01	
e : 0.18	f : 0.18	g : 0.15	i : 0.09	c : 0.06	" : 0.06	= : 0.06	[ : 0.06	b : 0.04	$ : 0.03	# : 0.03	d : 0.01	
e : 0.23	f : 0.15	g : 0.14	i : 0.09	[ : 0.07	= : 0.06	" : 0.04	b : 0.04	$ : 0.03	# : 0.03	c : 0.03	! : 0.03	a : 0.01	
[ : 0.17	d : 0.14	f : 0.12	e : 0.10	g : 0.10	i : 0.09	! : 0.07	= : 0.04	$ : 0.03	# : 0.03	b : 0.03	c : 0.01	" : 0.01	
c : 0.31	d : 0.14	g : 0.10	e : 0.09	f : 0.09	i : 0.04	= : 0.04	! : 0.04	[ : 0.04	# : 0.03	b : 0.01	a : 0.01	
c : 0.31	d : 0.14	b : 0.12	e : 0.09	g : 0.09	f : 0.07	[ : 0.06	i : 0.04	= : 0.03	# : 0.01	
c : 0.31	d : 0.14	b : 0.12	e : 0.09	g : 0.09	a : 0.09	f : 0.06	i : 0.04	= : 0.03	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.31	d : 0.14	b : 0.12	e : 0.09	g : 0.09	a : 0.09	f : 0.06	i : 0.04	= : 0.03	
c : 0.31	d : 0.14	b : 0.12	e : 0.09	g : 0.09	] : 0.07	f : 0.06	i : 0.04	= : 0.03	4 : 0.01	
c : 0.31	d : 0.14	f : 0.10	g : 0.10	e : 0.09	i : 0.04	= : 0.04	2 : 0.04	4 : 0.03	] : 0.03	b : 0.01	3 : 0.01	
d : 0.14	2 : 0.14	e : 0.14	g : 0.12	f : 0.12	] : 0.09	i : 0.04	= : 0.04	4 : 0.03	c : 0.03	3 : 0.03	b : 0.01	6 : 0.01	a : 0.01	
e : 0.20	f : 0.14	2 : 0.12	g : 0.12	] : 0.09	i : 0.06	= : 0.06	3 : 0.04	4 : 0.03	c : 0.03	a : 0.01	b : 0.01	6 : 0.01	> : 0.01	h : 0.01	
e : 0.20	f : 0.17	g : 0.12	c : 0.09	i : 0.07	= : 0.06	4 : 0.04	b : 0.04	3 : 0.04	2 : 0.03	] : 0.01	: : 0.01	6 : 0.01	> : 0.01	h : 0.01	d : 0.01	
e : 0.25	g : 0.17	f : 0.10	i : 0.09	c : 0.06	= : 0.06	] : 0.04	b : 0.03	4 : 0.03	2 : 0.03	3 : 0.03	d : 0.03	6 : 0.01	> : 0.01	h : 0.01	
e : 0.26	g : 0.10	f : 0.10	i : 0.09	= : 0.07	c : 0.06	: : 0.04	2 : 0.04	] : 0.03	4 : 0.03	d : 0.03	b : 0.01	6 : 0.01	> : 0.01	3 : 0.01	5 : 0.01	h : 0.01	

#score	1006.6834047516155
#seq	64
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_CDS_m3_run1.txt

#BEAR
!!ccc"""bbqqqqqqqqbb]cccccc]	chr14:21463959-21464221(+)$1	262	112	140	15.3048
ccc$$$$$bbrrrrrrrrrbb4444ccc	chr14:39650750-39650993(+)$1	243	89	117	9.1110
ddd[eeeeerrrrrrrrreeeeeddddd	chr2:216946213-216946469(-)$1	256	7	35	9.8336
eee"""ddddqqqqqqqqdddd333eee	chr6:138753465-138753718(-)$1	253	183	211	15.4285
gggggggcccqqqqqqqqccc]gggggg	chr1:203767097-203767374(+)$1	277	7	35	16.2608
c[bb[ccc[aqqqqqqqqa]ccc]bbcc	chr12:133360601-133360911(-)$1	310	70	98	15.1903
"eeeee[cccqqqqqqqqccc]eeeeec	chr3:184098397-184098683(+)$1	286	121	149	15.8768
:iiiiiiiiiqqqqqqqqiiiiiiiiib	chr11:85375448-85375725(-)$1	277	88	116	14.4218
!ggggggg[aqqqqqqqqa]ggggggg2	chr16:16248442-16248744(-)$1	302	52	80	15.6827
dd!!bb[cccqqqqqqqqccc]bb22dd	chr17:73201687-73202001(+)$1	314	145	173	14.8071
eeeee[ddddqqqqqqqqdddd]eeeee	chr13:113980166-113980480(-)$1	314	99	127	14.8947
ffff!!ddddqqqqqqqqdddd22ffff	chr9:117037888-117038148(+)$1	260	108	136	14.3816
"""gggggggqqqqqqqqgggggggeee	chr4:71554558-71554866(+)$1	308	202	230	15.3084
d[ccc[ddddqqqqqqqqdddd]ccc]d	chr20:60909215-60909496(-)$1	281	98	126	15.4992
cc[cccddddqqqqqqqqdddd]ccc]c	chr14:24109001-24109216(+)$1	215	180	208	15.2798
===:ddddbbqqqqqqqqbb]ddddccc	chr3:66023594-66023888(-)$1	294	144	172	13.8329
gggggg[cccqqqqqqqqccc]gggggg	chr19:36297262-36297528(-)$1	266	193	221	16.4032
dd[dddd[bbqqqqqqqqbb]ddddddd	chr17:74289818-74290118(-)$1	300	208	236	14.4649
dddd"""cccqqqqqqqqccc333dddd	chr19:49514144-49514395(+)$1	251	124	152	16.3906
c[ffffffbbqqqqqqqqbb]ffffff2	chr22:46685232-46685551(+)$1	319	141	169	13.5431
[dddda!!bbqqqqqqqqbb22a]dddd	chr9:117050880-117051123(+)$1	243	173	201	14.6643
b[eeeee[arrrrrrrrraeeeee]bb]	chrX:48433498-48433774(+)$1	276	228	256	9.4147
eeeee[acccqqqqqqqqccc]a]eeee	chr20:3765553-3765860(-)$1	307	153	181	15.9939
[dddd[cccrrrrrrrrrccc]dddd]c	chr16:89350981-89351318(-)$1	337	63	91	10.8960
cc"""eeeeeqqqqqqqqeeeeecccbb	chr14:23450739-23450992(-)$1	253	35	63	14.4826
ddd!!eeeeeqqqqqqqqeeeee22ddd	chr20:52197889-52198177(-)$1	288	86	114	14.8765
ddd[dddd[aqqqqqqqqa22ddddddd	chr17:46052789-46053038(+)$1	249	42	70	14.7320
hhhhh!!cccqqqqqqqqccc]hhhhhh	chr18:55997915-55998230(+)$1	315	3	31	14.9289
edddd[ddddqqqqqqqqdddd]ddddB	chr9:15423006-15423291(+)$1	285	208	236	14.0417
eehhhhhhhhqqqqqqqqhhhhhhhh44	chr1:29508046-29508391(-)$1	345	165	193	13.1351
[ggggggg[aqqqqqqqqa]ggggggg]	chr1:46073535-46073847(+)$1	312	32	60	15.8942
gggggggcccqqqqqqqqccc:ddddmm	chr6:32939471-32939692(+)$1	221	184	212	13.8651
[eeeee!!bbrrrrrrrrrbbeeeee]c	chr2:71357672-71357977(+)$1	305	14	42	9.8175
ffff[ccc[aqqqqqqqqa]ccc22fff	chr6:33164137-33164457(-)$1	320	68	96	14.8997
===bb!!bbaqqqqqqqqa]bb22bb88	chr6:154831054-154831316(-)$1	262	67	95	13.1729
dddddddd[aqqqqqqqqadddd:ccc[	chr17:40269709-40269932(-)$1	223	113	141	14.0299
iiiii!!cccqqqqqqqqccciiiiiii	chr7:72861490-72861755(-)$1	265	228	256	16.6576
ddd[eeeeerrrrrrrrreeeee]dddd	chr17:66539758-66540039(+)$1	281	182	210	10.1211
c[hhhhhhhhqqqqqqqqhhhhhhhhcc	chr20:61452436-61452664(+)$1	228	39	67	13.4688
[bbcccddddrrrrrrrrrdddd]ccc]	chr20:31023294-31023545(+)$1	251	177	205	9.8564
==========qqqqqqqq==========	chr22:21799973-21800290(+)$1	317	85	113	16.0663
eeee!!ddddqqqqqqqqdddd22eeee	chr16:22019563-22019861(+)$1	298	62	90	15.0587
dddd[eeeeeqqqqqqqqeeeee]dddd	chr2:27593044-27593302(-)$1	258	138	166	14.8300
d!!bb[cccrrrrrrrrrcccbb22ddd	chr16:22337033-22337349(+)$1	316	109	137	10.1742
gggggggcccssssssssssccc]gggg	chr17:74287006-74287269(-)$1	263	199	227	9.6948
c!!eeeeebbqqqqqqqqbb]eeeee33	chr9:100818961-100819252(+)$1	291	87	115	14.8373
ccc[ffffffqqqqqqqqffffffccc]	chr16:75298138-75298376(-)$1	238	139	167	14.4922
d[a[bb[cccqqqqqqqqcccbbadddd	chr19:39437030-39437285(-)$1	255	174	202	15.2333
bbb[ffffffqqqqqqqqffffffbb]b	chr16:75298176-75298447(-)$1	271	210	238	12.7840
f"""dddd[aqqqqqqqqadddd22fff	chr5:78373202-78373526(+)$1	324	230	258	14.8690
eeee"""cccqqqqqqqqccceeeee:d	chr17:37618228-37618524(+)$1	296	98	126	15.0908
dd$$$$$cccqqqqqqqqcccdddd]bb	chr6:30632856-30633124(-)$1	268	157	185	14.4389
ncccffffffqqqqqqqqffffffeeee	chr1:53377136-53377420(-)$1	284	178	206	13.3787
ccc####cccqqqqqqqqccc22ccc::	chr14:23528460-23528707(-)$1	247	146	174	14.2330
ccc[ffffffqqqqqqqqffffff]ccc	chr10:135215570-135215839(+)$1	269	200	228	14.5088
"""ccc[cccqqqqqqqqccc4444ccc	chr9:116997809-116998032(+)$1	223	126	154	16.2425

#otherMatches

#Seq PSSM
UCACCUUUGGACCCUCGACCUGGUUUUG	chr14:21463959-21464221(+)$1	262	112	140	15.3048
GAUAGAAAGCACAGAAGGAGCGUGGAUC	chr14:39650750-39650993(+)$1	243	89	117	9.1110
GGCCUCCUGGGCUAAGGGCAGGAGCUAC	chr2:216946213-216946469(-)$1	256	7	35	9.8336
GGACCGGUCCAAUUACCAGGAUAAAUCC	chr6:138753465-138753718(-)$1	253	183	211	15.4285
ACCUCUGUGAGAAAAGCGUCAGCAGGGG	chr1:203767097-203767374(+)$1	277	7	35	16.2608
CGCUGCUGGAAAAGGAACUGCAGGAGGU	chr12:133360601-133360911(-)$1	310	70	98	15.1903
CGUGGCACCCGGACCUAGGGGAGCCAUU	chr3:184098397-184098683(+)$1	286	121	149	15.8768
GAGACGGAGGAUAUGGACUUUCUGUCUG	chr11:85375448-85375725(-)$1	277	88	116	14.4218
AUGGUGGGACCCGGCUCUGACCCACCGC	chr16:16248442-16248744(-)$1	302	52	80	15.6827
UCUAGGAGCCUGGGGUUCGGCGCUAUGG	chr17:73201687-73202001(+)$1	314	145	173	14.8071
CCUGAAGACCGACCAGGAGGUCCUCGGG	chr13:113980166-113980480(-)$1	314	99	127	14.8947
GCUGAUGGGUGAGGACGGGCCCCCCGGC	chr9:117037888-117038148(+)$1	260	108	136	14.3816
GUGGAUCCCAGUUUGUCGUGGGGUCAGA	chr4:71554558-71554866(+)$1	308	202	230	15.3084
GCCUGCGAGGGACCACUACCUCCCGGAC	chr20:60909215-60909496(-)$1	281	98	126	15.4992
CAAGACUCUGUUUCCCUCCAGAGGUUAU	chr14:24109001-24109216(+)$1	215	180	208	15.2798
CUUGCCCCGCUAUGACGUGCUGGGGGUC	chr3:66023594-66023888(-)$1	294	144	172	13.8329
AGAGGUAGGCCCGGGCCAGCUGGCCUCU	chr19:36297262-36297528(-)$1	266	193	221	16.4032
AGUAGGGAACAAAGCAAGGUCCCCUCUG	chr17:74289818-74290118(-)$1	300	208	236	14.4649
GAUCAAGUCAGAAGUCCGUGAGCAGAUC	chr19:49514144-49514395(+)$1	251	124	152	16.3906
UGAGGACGGGAACCCUGACCGCGUCCUG	chr22:46685232-46685551(+)$1	319	141	169	13.5431
ACCUGCUGGCAGGAUCGGGCAUGUCAGG	chr9:117050880-117051123(+)$1	243	173	201	14.6643
CAUUUCAAGGAGUAUUAACUGAAAAGUU	chrX:48433498-48433774(+)$1	276	228	256	9.4147
ACUGGGCCCAGGGAGUAGUGGAGGCCGG	chr20:3765553-3765860(-)$1	307	153	181	15.9939
AUCAGACUCCACAAGGACGAGACUGACA	chr16:89350981-89351318(-)$1	337	63	91	10.8960
CGGGAGCCCCUUGCCAGCGGGGCCGUGC	chr14:23450739-23450992(-)$1	253	35	63	14.4826
CGCCCCUCUGGAUGAAAAUGGAGCCGUG	chr20:52197889-52198177(-)$1	288	86	114	14.8765
GGAUGUUUUCUUCAAUCUGUUGGACUCC	chr17:46052789-46053038(+)$1	249	42	70	14.7320
UGGAUCCCUACUUCUUUCUAGUGUUUAC	chr18:55997915-55998230(+)$1	315	3	31	14.9289
UUGCAGCUUGGGGUCAAACAGGGUGCAG	chr9:15423006-15423291(+)$1	285	208	236	14.0417
CCGGGAGCGCGAUGUGGAGCGCUUCUUU	chr1:29508046-29508391(-)$1	345	165	193	13.1351
GUUCUUGAACAACUGGUAGGUCAAGAAG	chr1:46073535-46073847(+)$1	312	32	60	15.8942
UGGAGUCGGCGGACCACAGCUCAGCCAA	chr6:32939471-32939692(+)$1	221	184	212	13.8651
GAACUUUCGGCUCUGAAAUCCAAGUUGC	chr2:71357672-71357977(+)$1	305	14	42	9.8175
CUGCAGCGGUACAGGAGGAGCGUCAGCG	chr6:33164137-33164457(-)$1	320	68	96	14.8997
CAUGGAACCCGUGACCAAGUGGAGCCCC	chr6:154831054-154831316(-)$1	262	67	95	13.1729
GCUCCCAGAGAACCUGACCCUGGAGGAU	chr17:40269709-40269932(-)$1	223	113	141	14.0299
UGGCUUGGCAGUAGGUAGUGUGGCCGGC	chr7:72861490-72861755(-)$1	265	228	256	16.6576
GCGAGAAAGGAAAACGGGCUUUUAUGCU	chr17:66539758-66540039(+)$1	281	182	210	10.1211
GAUUGGGUUUGCAAAUAGAGGCCCAGCC	chr20:61452436-61452664(+)$1	228	39	67	13.4688
ACGGAGACUCUGAAGCACUGAGUCCUCA	chr20:31023294-31023545(+)$1	251	177	205	9.8564
GUGCCUCUUAUUCUGAGCUGGGGGGCAC	chr22:21799973-21800290(+)$1	317	85	113	16.0663
GAUAAACUGACCAUCAUCUCAGGAUGUC	chr16:22019563-22019861(+)$1	298	62	90	15.0587
GGCUGUUCGCGAGGGUGAGUGAAGAGCC	chr2:27593044-27593302(-)$1	258	138	166	14.8300
GAACCACGCGUUGCUGGAGCGGGAGCUG	chr16:22337033-22337349(+)$1	316	109	137	10.1742
GAAACCAUUGUCUCUGUUUUCAGUUGGU	chr17:74287006-74287269(-)$1	263	199	227	9.6948
gACCCAGACUGGUAGUGAGGCUUUGGAC	chr9:100818961-100819252(+)$1	291	87	115	14.8373
CAGUAGUGAUUAGGGAAUGUCACUCUGG	chr16:75298138-75298376(-)$1	238	139	167	14.4922
GUGAGUGAGGAGCGGCACCCUGCCCCAG	chr19:39437030-39437285(-)$1	255	174	202	15.2333
CAGUAGUGAUUAGGGAAUGUCACUCUGG	chr16:75298176-75298447(-)$1	271	210	238	12.7840
CAGGUUGGUGUCCACAUCCCCAAGAGUG	chr5:78373202-78373526(+)$1	324	230	258	14.8690
GCCCAAUUCAGAGAGACAUGGGGGCAAG	chr17:37618228-37618524(+)$1	296	98	126	15.0908
GCAGCGUCCCUGAAGUUUGGGGCCCGAG	chr6:30632856-30633124(-)$1	268	157	185	14.4389
UGCAGGUAGGUUCUCUCUCCUGCCCCCA	chr1:53377136-53377420(-)$1	284	178	206	13.3787
GCUGGAGCGAGAGAAACGUCGGGAGCAC	chr14:23528460-23528707(-)$1	247	146	174	14.2330
ggcuggggcugggaccggggcCCCUGCC	chr10:135215570-135215839(+)$1	269	200	228	14.5088
AUUGCAUGAGAUUUUCCCCUCCCCCUGC	chr9:116997809-116998032(+)$1	223	126	154	16.2425

#DB
..(((...((........)).)))))).	chr14:21463959-21464221(+)$1	1	112	140	15.3048
(((.....((.........))....)))	chr14:39650750-39650993(+)$1	1	89	117	9.1110
(((.(((((.........))))))))))	chr2:216946213-216946469(-)$1	1	7	35	9.8336
(((...((((........))))...)))	chr6:138753465-138753718(-)$1	1	183	211	15.4285
((((((((((........))).))))))	chr1:203767097-203767374(+)$1	1	7	35	16.2608
(.((.(((.(........).))).))))	chr12:133360601-133360911(-)$1	1	70	98	15.1903
.(((((.(((........))).))))))	chr3:184098397-184098683(+)$1	1	121	149	15.8768
.(((((((((........)))))))))(	chr11:85375448-85375725(-)$1	1	88	116	14.4218
.(((((((.(........).))))))).	chr16:16248442-16248744(-)$1	1	52	80	15.6827
((..((.(((........))).))..))	chr17:73201687-73202001(+)$1	1	145	173	14.8071
(((((.((((........)))).)))))	chr13:113980166-113980480(-)$1	1	99	127	14.8947
((((..((((........))))..))))	chr9:117037888-117038148(+)$1	1	108	136	14.3816
...(((((((........))))))))))	chr4:71554558-71554866(+)$1	1	202	230	15.3084
(.(((.((((........)))).))).)	chr20:60909215-60909496(-)$1	1	98	126	15.4992
((.(((((((........)))).))).)	chr14:24109001-24109216(+)$1	1	180	208	15.2798
))).((((((........)).))))(((	chr3:66023594-66023888(-)$1	1	144	172	13.8329
((((((.(((........))).))))))	chr19:36297262-36297528(-)$1	1	193	221	16.4032
((.((((.((........)).)))))))	chr17:74289818-74290118(-)$1	1	208	236	14.4649
((((...(((........)))...))))	chr19:49514144-49514395(+)$1	1	124	152	16.3906
(.((((((((........)).)))))).	chr22:46685232-46685551(+)$1	1	141	169	13.5431
.(((((..((........))..).))))	chr9:117050880-117051123(+)$1	1	173	201	14.6643
(.(((((.(.........)))))).)).	chrX:48433498-48433774(+)$1	1	228	256	9.4147
(((((.((((........))).).))))	chr20:3765553-3765860(-)$1	1	153	181	15.9939
.((((.(((.........))).)))).)	chr16:89350981-89351318(-)$1	1	63	91	10.8960
((...(((((........))))))))))	chr14:23450739-23450992(-)$1	1	35	63	14.4826
(((..(((((........)))))..)))	chr20:52197889-52198177(-)$1	1	86	114	14.8765
(((.((((.(........)..)))))))	chr17:46052789-46053038(+)$1	1	42	70	14.7320
(((((..(((........))).))))))	chr18:55997915-55998230(+)$1	1	3	31	14.9289
)((((.((((........)))).)))))	chr9:15423006-15423291(+)$1	1	208	236	14.0417
((((((((((........))))))))..	chr1:29508046-29508391(-)$1	1	165	193	13.1351
.(((((((.(........).))))))).	chr1:46073535-46073847(+)$1	1	32	60	15.8942
)))))))(((........))).((((..	chr6:32939471-32939692(+)$1	1	184	212	13.8651
.(((((..((.........))))))).)	chr2:71357672-71357977(+)$1	1	14	42	9.8175
((((.(((.(........).)))..)))	chr6:33164137-33164457(-)$1	1	68	96	14.8997
(((((..(((........).))..))..	chr6:154831054-154831316(-)$1	1	67	95	13.1729
))))((((.(........))))).(((.	chr17:40269709-40269932(-)$1	1	113	141	14.0299
(((((..(((........))))))))))	chr7:72861490-72861755(-)$1	1	228	256	16.6576
(((.(((((.........))))).))))	chr17:66539758-66540039(+)$1	1	182	210	10.1211
(.((((((((........))))))))))	chr20:61452436-61452664(+)$1	1	39	67	13.4688
.(((((((((.........)))).))).	chr20:31023294-31023545(+)$1	1	177	205	9.8564
((((((((((........))))))))))	chr22:21799973-21800290(+)$1	1	85	113	16.0663
((((..((((........))))..))))	chr16:22019563-22019861(+)$1	1	62	90	15.0587
((((.(((((........))))).))))	chr2:27593044-27593302(-)$1	1	138	166	14.8300
(..((.(((.........)))))..)))	chr16:22337033-22337349(+)$1	1	109	137	10.1742
((((((((((..........))).))))	chr17:74287006-74287269(-)$1	1	199	227	9.6948
(..(((((((........)).)))))..	chr9:100818961-100819252(+)$1	1	87	115	14.8373
(((.((((((........))))))))).	chr16:75298138-75298376(-)$1	1	139	167	14.4922
(.(.((.(((........))))))))))	chr19:39437030-39437285(-)$1	1	174	202	15.2333
(((.((((((........)))))))).)	chr16:75298176-75298447(-)$1	1	210	238	12.7840
(...((((.(........)))))..)))	chr5:78373202-78373526(+)$1	1	230	258	14.8690
((((...(((........)))))))).(	chr17:37618228-37618524(+)$1	1	98	126	15.0908
((.....(((........))))))).))	chr6:30632856-30633124(-)$1	1	157	185	14.4389
.)))((((((........))))))((((	chr1:53377136-53377420(-)$1	1	178	206	13.3787
(((....(((........)))..)))..	chr14:23528460-23528707(-)$1	1	146	174	14.2330
(((.((((((........)))))).)))	chr10:135215570-135215839(+)$1	1	200	228	14.5088
...(((.(((........)))....)))	chr9:116997809-116998032(+)$1	1	126	154	16.2425

#PSSM
d : 0.23	c : 0.17	e : 0.12	[ : 0.08	g : 0.07	" : 0.05	f : 0.05	= : 0.05	! : 0.03	b : 0.03	: : 0.01	h : 0.01	i : 0.01	n : 0.01	
d : 0.23	e : 0.14	c : 0.12	g : 0.10	[ : 0.10	! : 0.05	" : 0.05	= : 0.05	i : 0.03	f : 0.03	b : 0.03	h : 0.01	
d : 0.17	e : 0.14	c : 0.12	g : 0.10	" : 0.07	b : 0.05	! : 0.05	f : 0.05	= : 0.05	h : 0.05	i : 0.03	[ : 0.03	a : 0.01	$ : 0.01	
e : 0.14	[ : 0.12	g : 0.12	d : 0.12	c : 0.10	" : 0.05	b : 0.05	f : 0.05	h : 0.05	$ : 0.03	i : 0.03	! : 0.03	: : 0.01	= : 0.01	# : 0.01	
e : 0.14	d : 0.14	g : 0.12	c : 0.08	f : 0.08	" : 0.07	b : 0.07	[ : 0.05	! : 0.05	h : 0.05	$ : 0.03	i : 0.03	= : 0.01	# : 0.01	
e : 0.16	g : 0.12	[ : 0.10	c : 0.08	! : 0.08	d : 0.08	f : 0.08	" : 0.07	$ : 0.03	b : 0.03	h : 0.03	i : 0.01	a : 0.01	= : 0.01	# : 0.01	
d : 0.23	e : 0.12	g : 0.10	[ : 0.08	f : 0.08	! : 0.08	c : 0.07	" : 0.05	$ : 0.03	h : 0.03	i : 0.01	a : 0.01	= : 0.01	# : 0.01	
c : 0.33	d : 0.21	e : 0.10	f : 0.08	g : 0.05	[ : 0.03	! : 0.03	h : 0.03	" : 0.01	$ : 0.01	i : 0.01	b : 0.01	= : 0.01	
c : 0.30	b : 0.16	d : 0.14	[ : 0.12	e : 0.08	f : 0.07	h : 0.03	i : 0.01	g : 0.01	a : 0.01	= : 0.01	
c : 0.26	b : 0.14	d : 0.14	a : 0.14	r : 0.08	f : 0.07	e : 0.05	h : 0.03	i : 0.01	g : 0.01	= : 0.01	
q : 0.83	r : 0.14	s : 0.01	
q : 0.83	r : 0.14	s : 0.01	
q : 0.83	r : 0.14	s : 0.01	
q : 0.83	r : 0.14	s : 0.01	
q : 0.83	r : 0.14	s : 0.01	
q : 0.83	r : 0.14	s : 0.01	
q : 0.83	r : 0.14	s : 0.01	
q : 0.83	r : 0.14	s : 0.01	
c : 0.28	a : 0.16	d : 0.12	b : 0.10	e : 0.08	f : 0.07	r : 0.05	h : 0.03	i : 0.01	g : 0.01	= : 0.01	s : 0.01	
c : 0.28	d : 0.17	b : 0.14	e : 0.10	] : 0.08	f : 0.07	h : 0.03	i : 0.01	g : 0.01	2 : 0.01	= : 0.01	s : 0.01	
c : 0.33	d : 0.17	e : 0.10	] : 0.08	f : 0.07	b : 0.05	g : 0.05	2 : 0.03	h : 0.03	i : 0.01	= : 0.01	
d : 0.24	e : 0.16	] : 0.12	f : 0.08	c : 0.07	g : 0.05	b : 0.05	4 : 0.03	i : 0.03	2 : 0.03	h : 0.03	3 : 0.01	: : 0.01	= : 0.01	
e : 0.17	d : 0.16	g : 0.08	f : 0.08	c : 0.07	] : 0.07	2 : 0.07	b : 0.05	h : 0.05	4 : 0.03	3 : 0.03	i : 0.03	a : 0.03	= : 0.01	
d : 0.14	] : 0.12	2 : 0.12	e : 0.10	c : 0.08	g : 0.08	f : 0.08	h : 0.05	4 : 0.03	3 : 0.03	i : 0.03	b : 0.01	: : 0.01	= : 0.01	a : 0.01	
d : 0.23	c : 0.14	e : 0.14	g : 0.10	2 : 0.08	b : 0.05	h : 0.05	4 : 0.03	i : 0.03	f : 0.03	] : 0.03	3 : 0.01	= : 0.01	
d : 0.23	c : 0.21	e : 0.17	g : 0.08	b : 0.07	f : 0.07	h : 0.05	i : 0.03	2 : 0.01	= : 0.01	] : 0.01	
d : 0.21	c : 0.17	e : 0.12	g : 0.08	] : 0.08	f : 0.07	b : 0.05	i : 0.03	: : 0.03	h : 0.01	4 : 0.01	m : 0.01	8 : 0.01	= : 0.01	3 : 0.01	
d : 0.23	c : 0.17	e : 0.10	] : 0.08	b : 0.07	g : 0.05	f : 0.05	2 : 0.03	h : 0.01	B : 0.01	4 : 0.01	m : 0.01	8 : 0.01	[ : 0.01	i : 0.01	= : 0.01	3 : 0.01	: : 0.01	

#score	786.7999538094455
#seq	56
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_transcript_m1_run2.txt

#BEAR
!!===========[bbpppppppbb]===========fff	chr7:150935432-150935656(+)$1	224	113	153	18.5908
dggggggg[==========lll==========22gggggg	chr20:34636107-34636333(-)$1	226	123	163	18.3786
===========[ccc[a[ammmma]a]ccc==========	chr5:167987915-167988154(-)$1	239	194	234	24.0316
!!===========[bbpppppppbb]===========fff	chr7:150935456-150935682(+)$1	226	89	129	18.5908
=============[a[a[ammmmaa]a=============	chr4:38869503-38869772(+)$1	269	182	222	26.2169
===[ccc[===========oooooo===========ccc]	chr13:92003520-92003736(+)$1	216	64	104	21.9094
==========!!a[bbddddllldddd22bb]a22=====	chr1:151238392-151238639(+)$1	247	119	159	17.5512
==========####ddddnnnnndddd22==========:	chr10:70092346-70092596(+)$1	250	174	214	19.1756
fccc[iiiiiiiii!!cccnnnnnccciiiiiiiii]ccc	chrX:151127252-151127492(-)$1	240	78	118	18.3592
ccc:===========!!bbmmmmbb22===========::	chr16:15242543-15242808(-)$1	265	47	87	18.1770
""===========wwwwwwwwwwwwww===========]i	chr8:135817023-135817246(-)$1	223	74	114	22.1067
===[ccc[===========oooooo===========ccc]	chr13:92003488-92003694(+)$1	206	96	136	21.9094
===[ccc[===========oooooo===========ccc]	chr13:92003545-92003755(+)$1	210	39	79	21.9094
$$$===========!!bbnnnnnbb22===========]i	chrX:109298396-109298635(+)$1	239	191	231	21.5464
===========a[ccca!!dddd[a!!==========!!d	chr9:139560096-139560344(+)$1	248	127	167	18.6834
=============[arrrrrrrrra]=============4	chr17:27717512-27717774(+)$1	262	181	221	24.5897
[iiiiiiiii!!a[eeeeemmmmeeeeeaiiiiiiiiicc	chr9:139564479-139564693(+)$1	214	151	191	18.5579
=[============a!!bbmmmmbb22a]===========	chr9:111808475-111808730(-)$1	255	166	206	23.4670
===[ccc[===========oooooo===========ccc]	chr13:92003502-92003720(+)$1	218	82	122	21.9094
[bb==========[bbqqqqqqqqbb]==========]bb	chr3:20081761-20082033(+)$1	272	90	130	18.1581
=============[a[a[ammmmaa]a=============	chr4:38869573-38869836(+)$1	263	112	152	26.2169
i[==========xxxxxxxxxxxxxxx==========]ii	chr3:38010836-38011043(+)$1	207	77	117	21.4754
g!!iiiiiiiii[bb[cccmmmmccc333bb]iiiiiiii	chr22:22007444-22007673(+)$1	229	167	207	19.4583
=!!==========[aqqqqqqqqa]==========]====	chr8:141742651-141742925(-)$1	274	192	232	21.2016
===============!!bbmmmmbb]==============	chr15:70371621-70371871(-)$1	250	94	134	24.2988
=============[arrrrrrrrra]==============	chr13:50570464-50570691(-)$1	227	78	118	24.8769
==============vvvvvvvvvvvvv=============	chrX:133680319-133680645(-)$1	326	70	110	23.1459
==========[ccctttttttttttccc============	chr13:92003273-92003485(+)$1	212	61	101	18.6426
===========[ccc[cccnnnnncccccc==========	chr10:91352453-91352667(-)$1	214	103	143	22.1976
==[iiiiiiiii"""a!!ammmma22a22iiiiiiiii]=	chr17:56408588-56408792(-)$1	204	136	176	22.5188
==[iiiiiiiii"""a!!ammmma22a22iiiiiiiii]=	chr17:56408599-56408801(-)$1	202	145	185	22.5188
===========[ccc[a[annnnna]accc==========	chr20:3897946-3898201(+)$1	255	212	252	23.7253
============]ggggggg333bb]ccc22=========	chr17:28444030-28444238(+)$1	208	131	171	18.7841
===========[ccc[a[annnnna]accc==========	chr20:3898094-3898311(+)$1	217	64	104	23.7253
==========ccc####ccclllcccccc]==========	chr1:205417402-205417714(-)$1	312	120	160	22.1677
====$$$$$ccc"""ddddmmmmdddd]ccc=========	chr9:96938099-96938303(+)$1	204	162	202	17.0527
ddd============[===============[bb[bb[bb	chr16:14397693-14397931(+)$1	238	127	167	16.3251
===========[ccc[a[ammmma]a]ccc==========	chr5:167987817-167988023(-)$1	206	63	103	24.0316
=iiiiiiiiiccc[eeeeemmmmeeeee333ccc4444ii	chr17:57215044-57215265(-)$1	221	61	101	16.4578
=======[===========oooooo===========]===	chrX:117520217-117520465(+)$1	248	155	195	24.3869
=============^^^^^^^^^^^^^^^^^^=========	chr8:41517914-41518178(-)$1	264	164	204	20.9500
==[iiiiiiiii"""a!!ammmma22a22iiiiiiiii]=	chr17:56408592-56408799(-)$1	207	143	183	22.5188
eee[iiiiiiiii!!bboooooobb]iiiiiiiii]eeee	chr22:20020641-20020888(+)$1	247	42	82	18.4639
i[==========xxxxxxxxxxxxxxx==========]ii	chr3:38010843-38011065(+)$1	222	70	110	21.4754
===========[ccc[a[ammmma]a]ccc==========	chr5:167987807-167988017(-)$1	210	57	97	24.0316
========[ffffff[a[ammmma]a]ffffff]======	chr1:156390112-156390403(-)$1	291	206	246	18.9930

#otherMatches

#Seq PSSM
GAGGGGCUGGAGGUGAUGGAUGUUUUCCUCCGGUUCUCAG	chr7:150935432-150935656(+)$1	224	113	153	18.5908
CCGAUUUUAUAAUAUCUAGUCUCUAGAUAUUAAAGAGGUU	chr20:34636107-34636333(-)$1	226	123	163	18.3786
UACAGUGCUGCCUUGUUGCAUAUGGAUCAAGCAGCAUUGU	chr5:167987915-167988154(-)$1	239	194	234	24.0316
GAGGGGCUGGAGGUGAUGGAUGUUUUCCUCCGGUUCUCAG	chr7:150935456-150935682(+)$1	226	89	129	18.5908
gugugugaguguguguCGCUCCGGGUCCACGCUCAUGCAC	chr4:38869503-38869772(+)$1	269	182	222	26.2169
GAUCGGUUGCAAUGCUGUGUUUCUGUAUGGUAUUGCACUU	chr13:92003520-92003736(+)$1	216	64	104	21.9094
GCGGCAGGAGGAGGAGGCCCGGCGGGCAGCUGCAGCUUCU	chr1:151238392-151238639(+)$1	247	119	159	17.5512
CGCAGUCUCGGCAGGGCUACCUGGGCUGACGGGACUGCGA	chr10:70092346-70092596(+)$1	250	174	214	19.1756
UUUUGUUUCAUUUAUUGAGUCAGUCUCUGGAUGAGGGAAA	chrX:151127252-151127492(-)$1	240	78	118	18.3592
CACGCUCACUCCUGUACGCGAUUGCCGGCAGGGGUGGGGG	chr16:15242543-15242808(-)$1	265	47	87	18.1770
CCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAG	chr8:135817023-135817246(-)$1	223	74	114	22.1067
GAUCGGUUGCAAUGCUGUGUUUCUGUAUGGUAUUGCACUU	chr13:92003488-92003694(+)$1	206	96	136	21.9094
GAUCGGUUGCAAUGCUGUGUUUCUGUAUGGUAUUGCACUU	chr13:92003545-92003755(+)$1	210	39	79	21.9094
gagggugccauucacauagacuauaauugaauggcgccac	chrX:109298396-109298635(+)$1	239	191	231	21.5464
gcucgggcggcaguggcggcggcgcgugcgcgccccggAU	chr9:139560096-139560344(+)$1	248	127	167	18.6834
GGGCCUCGGCUGUGUGAGGACUAGAGGCGGCCGAGGCCCG	chr17:27717512-27717774(+)$1	262	181	221	24.5897
AUGCAGUGCUAGGAGGGGCGGCUGUCCCCAGCGCUGCGUC	chr9:139564479-139564693(+)$1	214	151	191	18.5579
UUACUAAGUUGCAUGUUGUCACGGCCUCAAUGCAAUUUAG	chr9:111808475-111808730(-)$1	255	166	206	23.4670
GAUCGGUUGCAAUGCUGUGUUUCUGUAUGGUAUUGCACUU	chr13:92003502-92003720(+)$1	218	82	122	21.9094
gggcgggagggcguggggggagggUCUCGCUCUCCCGACU	chr3:20081761-20082033(+)$1	272	90	130	18.1581
gugugugaguguguguCGCUCCGGGUCCACGCUCAUGCAC	chr4:38869573-38869836(+)$1	263	112	152	26.2169
CCAGGAUAGGCUGUGCAGGUCCCAAUGGGCCUAUUCUUGG	chr3:38010836-38011043(+)$1	207	77	117	21.4754
CCCUGUUGCACUACUAUAGGCCGCUGGGAAGCAGUGCAAU	chr22:22007444-22007673(+)$1	229	167	207	19.4583
ucacagucuaguaugucucauccccuacuagacugaagcu	chr8:141742651-141742925(-)$1	274	192	232	21.2016
GUUGGGAGAACUUUUACGGUGAACCAGGAGGUUCUCCCAA	chr15:70371621-70371871(-)$1	250	94	134	24.2988
UUUUUUUUUGUUCGUUGCAUUUUUAGGAACAAAAAAAAAA	chr13:50570464-50570691(-)$1	227	78	118	24.8769
GGGCGGGGGCUCGCGUCUCUGUUUCCGGCGGGUCCUCGCC	chrX:133680319-133680645(-)$1	326	70	110	23.1459
UAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUUAUGAG	chr13:92003273-92003485(+)$1	212	61	101	18.6426
UACAGUGUUGCCUUGUGGCAUGGAGUUCAAGCAGCAUUGU	chr10:91352453-91352667(-)$1	214	103	143	22.1976
AGAAAGCACUACUAACAGCACUGGAGGGUGUAGUGUUUCC	chr17:56408588-56408792(-)$1	204	136	176	22.5188
AGAAAGCACUACUAACAGCACUGGAGGGUGUAGUGUUUCC	chr17:56408599-56408801(-)$1	202	145	185	22.5188
UACAGUGCUGCCUUGUAGCAUUCAGGUCAAGCAGCAUUGU	chr20:3897946-3898201(+)$1	255	212	252	23.7253
GCCCCUCAGUCUUGCUUCCUAACCCGCGCUUGAGUUUCUC	chr17:28444030-28444238(+)$1	208	131	171	18.7841
UACAGUGCUGCCUUGUAGCAUUCAGGUCAAGCAGCAUUGU	chr20:3898094-3898311(+)$1	217	64	104	23.7253
GGGAGUGAGGGCUUCUCGGGUGCCCCAGCUUCUCGCUUCC	chr1:205417402-205417714(-)$1	312	120	160	22.1677
AGUUUUAGGGUCACACCCACCACUGGGAGAUAACUAUACA	chr9:96938099-96938303(+)$1	204	162	202	17.0527
GCUGUGGUCUCAGAAUCGGGGUUUUGAGGGCGAGAUGAGU	chr16:14397693-14397931(+)$1	238	127	167	16.3251
UACAGUGCUGCCUUGUUGCAUAUGGAUCAAGCAGCAUUGU	chr5:167987817-167988023(-)$1	206	63	103	24.0316
UCAAUAUUGUCUCUGCUGUGUAAAUAGUUCUGAGUAGUGC	chr17:57215044-57215265(-)$1	221	61	101	16.4578
uauauauguacguauguguauauaaauguauacguagaua	chrX:117520217-117520465(+)$1	248	155	195	24.3869
GAGCUGCCCCGAGGCCCUUCAUGCUGCCCAGCUCGGGGCA	chr8:41517914-41518178(-)$1	264	164	204	20.9500
AGAAAGCACUACUAACAGCACUGGAGGGUGUAGUGUUUCC	chr17:56408592-56408799(-)$1	207	143	183	22.5188
AAGGCAGUUCCUGAUGGUCCCCUCCCCAGGGGCUGGCUUU	chr22:20020641-20020888(+)$1	247	42	82	18.4639
CCAGGAUAGGCUGUGCAGGUCCCAAUGGGCCUAUUCUUGG	chr3:38010843-38011065(+)$1	222	70	110	21.4754
UACAGUGCUGCCUUGUUGCAUAUGGAUCAAGCAGCAUUGU	chr5:167987807-167988017(-)$1	210	57	97	24.0316
AUCUAGCUGUAUGAGUGGUGUGGAGUCUUCAUAAAGCUAG	chr1:156390112-156390403(-)$1	291	206	246	18.9930

#DB
..(((((((((((.((.......)).))))))))))))))	chr7:150935432-150935656(+)$1	1	113	153	18.5908
)(((((((.((((((((((...))))))))))..))))))	chr20:34636107-34636333(-)$1	1	123	163	18.3786
(((((((((((.(((.(.(....).).)))))))))))))	chr5:167987915-167988154(-)$1	1	194	234	24.0316
..(((((((((((.((.......)).))))))))))))))	chr7:150935456-150935682(+)$1	1	89	129	18.5908
(((((((((((((.(.(.(....)).))))))))))))))	chr4:38869503-38869772(+)$1	1	182	222	26.2169
(((.(((.(((((((((((......)))))))))))))).	chr13:92003520-92003736(+)$1	1	64	104	21.9094
((((((((((..(.((((((...))))..)).)..)))))	chr1:151238392-151238639(+)$1	1	119	159	17.5512
((((((((((....((((.....))))..)))))))))).	chr10:70092346-70092596(+)$1	1	174	214	19.1756
)(((.(((((((((..(((.....)))))))))))).)))	chrX:151127252-151127492(-)$1	1	78	118	18.3592
))).(((((((((((..((....))..)))))))))))..	chr16:15242543-15242808(-)$1	1	47	87	18.1770
..(((((((((((..............))))))))))).)	chr8:135817023-135817246(-)$1	1	74	114	22.1067
(((.(((.(((((((((((......)))))))))))))).	chr13:92003488-92003694(+)$1	1	96	136	21.9094
(((.(((.(((((((((((......)))))))))))))).	chr13:92003545-92003755(+)$1	1	39	79	21.9094
...(((((((((((..((.....))..))))))))))).)	chrX:109298396-109298635(+)$1	1	191	231	21.5464
((((((((((((.((((..((((.(..((((((((((..(	chr9:139560096-139560344(+)$1	1	127	167	18.6834
(((((((((((((.(.........).))))))))))))).	chr17:27717512-27717774(+)$1	1	181	221	24.5897
.(((((((((..(.(((((....)))))))))))))))))	chr9:139564479-139564693(+)$1	1	151	191	18.5579
(.(((((((((((((..((....))..).)))))))))))	chr9:111808475-111808730(-)$1	1	166	206	23.4670
(((.(((.(((((((((((......)))))))))))))).	chr13:92003502-92003720(+)$1	1	82	122	21.9094
.((((((((((((.((........)).)))))))))).))	chr3:20081761-20082033(+)$1	1	90	130	18.1581
(((((((((((((.(.(.(....)).))))))))))))))	chr4:38869573-38869836(+)$1	1	112	152	26.2169
(.((((((((((...............)))))))))).))	chr3:38010836-38011043(+)$1	1	77	117	21.4754
(..(((((((((.((.(((....)))...)).))))))))	chr22:22007444-22007673(+)$1	1	167	207	19.4583
(..((((((((((.(........).)))))))))).))))	chr8:141742651-141742925(-)$1	1	192	232	21.2016
(((((((((((((((..((....)).))))))))))))))	chr15:70371621-70371871(-)$1	1	94	134	24.2988
(((((((((((((.(.........).))))))))))))))	chr13:50570464-50570691(-)$1	1	78	118	24.8769
((((((((((((((.............)))))))))))))	chrX:133680319-133680645(-)$1	1	70	110	23.1459
((((((((((.(((...........)))))))))))))))	chr13:92003273-92003485(+)$1	1	61	101	18.6426
(((((((((((.(((.(((.....))))))))))))))))	chr10:91352453-91352667(-)$1	1	103	143	22.1976
((.(((((((((...(..(....)..)..))))))))).)	chr17:56408588-56408792(-)$1	1	136	176	22.5188
((.(((((((((...(..(....)..)..))))))))).)	chr17:56408599-56408801(-)$1	1	145	185	22.5188
(((((((((((.(((.(.(.....).))))))))))))))	chr20:3897946-3898201(+)$1	1	212	252	23.7253
)))))))))))).)))))))...)).)))..)))))))))	chr17:28444030-28444238(+)$1	1	131	171	18.7841
(((((((((((.(((.(.(.....).))))))))))))))	chr20:3898094-3898311(+)$1	1	64	104	23.7253
(((((((((((((....(((...)))))).))))))))))	chr1:205417402-205417714(-)$1	1	120	160	22.1677
((((.....(((...((((....)))).))))))))))))	chr9:96938099-96938303(+)$1	1	162	202	17.0527
)))((((((((((((.(((((((((((((((.((.((.((	chr16:14397693-14397931(+)$1	1	127	167	16.3251
(((((((((((.(((.(.(....).).)))))))))))))	chr5:167987817-167988023(-)$1	1	63	103	24.0316
(((((((((((((.(((((....)))))...)))....))	chr17:57215044-57215265(-)$1	1	61	101	16.4578
(((((((.(((((((((((......))))))))))).)))	chrX:117520217-117520465(+)$1	1	155	195	24.3869
(((((((((((((..................)))))))))	chr8:41517914-41518178(-)$1	1	164	204	20.9500
((.(((((((((...(..(....)..)..))))))))).)	chr17:56408592-56408799(-)$1	1	143	183	22.5188
(((.(((((((((..((......)).))))))))).))))	chr22:20020641-20020888(+)$1	1	42	82	18.4639
(.((((((((((...............)))))))))).))	chr3:38010843-38011065(+)$1	1	70	110	21.4754
(((((((((((.(((.(.(....).).)))))))))))))	chr5:167987807-167988017(-)$1	1	57	97	24.0316
((((((((.((((((.(.(....).).)))))).))))))	chr1:156390112-156390403(-)$1	1	206	246	18.9930

#PSSM
= : 0.69	! : 0.04	d : 0.04	[ : 0.04	i : 0.04	f : 0.02	c : 0.02	" : 0.02	$ : 0.02	g : 0.02	e : 0.02	
= : 0.63	! : 0.08	[ : 0.06	c : 0.04	i : 0.04	g : 0.02	" : 0.02	$ : 0.02	b : 0.02	d : 0.02	e : 0.02	
= : 0.69	[ : 0.06	c : 0.04	i : 0.04	! : 0.04	g : 0.02	$ : 0.02	b : 0.02	d : 0.02	e : 0.02	
= : 0.69	i : 0.13	[ : 0.10	g : 0.02	c : 0.02	: : 0.02	
= : 0.69	i : 0.15	c : 0.08	g : 0.02	[ : 0.02	$ : 0.02	
= : 0.69	i : 0.17	c : 0.08	g : 0.02	$ : 0.02	
= : 0.69	i : 0.17	c : 0.08	g : 0.02	$ : 0.02	
= : 0.67	i : 0.17	[ : 0.10	g : 0.02	$ : 0.02	
= : 0.76	i : 0.17	[ : 0.04	$ : 0.02	
= : 0.78	i : 0.17	c : 0.02	f : 0.02	
= : 0.69	i : 0.13	c : 0.06	! : 0.04	# : 0.02	[ : 0.02	f : 0.02	
= : 0.54	[ : 0.13	i : 0.13	c : 0.08	! : 0.04	# : 0.02	a : 0.02	f : 0.02	
= : 0.47	c : 0.19	" : 0.08	a : 0.04	i : 0.04	[ : 0.04	x : 0.04	# : 0.02	] : 0.02	f : 0.02	
= : 0.26	[ : 0.23	c : 0.17	" : 0.08	# : 0.04	x : 0.04	i : 0.02	w : 0.02	b : 0.02	g : 0.02	^ : 0.02	! : 0.02	f : 0.02	
= : 0.19	c : 0.15	a : 0.13	b : 0.10	" : 0.08	! : 0.06	e : 0.04	x : 0.04	d : 0.02	w : 0.02	v : 0.02	t : 0.02	g : 0.02	# : 0.02	^ : 0.02	f : 0.02	
[ : 0.23	= : 0.13	b : 0.10	! : 0.10	a : 0.06	d : 0.04	r : 0.04	e : 0.04	x : 0.04	w : 0.02	c : 0.02	q : 0.02	v : 0.02	t : 0.02	g : 0.02	# : 0.02	^ : 0.02	
a : 0.19	= : 0.15	! : 0.13	d : 0.06	c : 0.06	p : 0.04	b : 0.04	r : 0.04	e : 0.04	q : 0.04	x : 0.04	w : 0.02	v : 0.02	t : 0.02	g : 0.02	# : 0.02	^ : 0.02	
[ : 0.17	= : 0.15	c : 0.08	b : 0.08	! : 0.08	d : 0.06	p : 0.04	r : 0.04	e : 0.04	q : 0.04	x : 0.04	w : 0.02	v : 0.02	t : 0.02	g : 0.02	^ : 0.02	o : 0.02	
a : 0.23	= : 0.15	c : 0.08	b : 0.06	p : 0.04	d : 0.04	n : 0.04	r : 0.04	e : 0.04	q : 0.04	x : 0.04	w : 0.02	! : 0.02	v : 0.02	t : 0.02	g : 0.02	^ : 0.02	o : 0.02	
m : 0.34	o : 0.13	n : 0.13	p : 0.04	d : 0.04	r : 0.04	q : 0.04	x : 0.04	l : 0.02	w : 0.02	v : 0.02	t : 0.02	g : 0.02	c : 0.02	= : 0.02	^ : 0.02	
m : 0.34	o : 0.13	n : 0.13	l : 0.06	p : 0.04	r : 0.04	q : 0.04	x : 0.04	w : 0.02	d : 0.02	v : 0.02	t : 0.02	3 : 0.02	= : 0.02	^ : 0.02	
m : 0.34	o : 0.13	n : 0.13	l : 0.06	p : 0.04	r : 0.04	q : 0.04	x : 0.04	w : 0.02	d : 0.02	v : 0.02	t : 0.02	3 : 0.02	= : 0.02	^ : 0.02	
m : 0.34	o : 0.13	n : 0.13	p : 0.04	= : 0.04	l : 0.04	r : 0.04	q : 0.04	x : 0.04	w : 0.02	d : 0.02	v : 0.02	t : 0.02	3 : 0.02	^ : 0.02	
a : 0.21	b : 0.17	o : 0.10	n : 0.08	d : 0.06	= : 0.04	r : 0.04	e : 0.04	x : 0.04	c : 0.04	w : 0.02	[ : 0.02	q : 0.02	v : 0.02	t : 0.02	^ : 0.02	
b : 0.19	a : 0.15	] : 0.10	o : 0.10	c : 0.08	d : 0.06	2 : 0.06	= : 0.04	e : 0.04	x : 0.04	w : 0.02	v : 0.02	t : 0.02	^ : 0.02	
] : 0.23	= : 0.17	2 : 0.13	c : 0.10	a : 0.08	d : 0.06	e : 0.04	x : 0.04	w : 0.02	! : 0.02	b : 0.02	v : 0.02	^ : 0.02	
= : 0.28	a : 0.15	] : 0.10	c : 0.10	d : 0.06	2 : 0.06	e : 0.04	x : 0.04	w : 0.02	! : 0.02	3 : 0.02	v : 0.02	^ : 0.02	i : 0.02	
= : 0.49	c : 0.19	2 : 0.10	i : 0.04	e : 0.04	a : 0.02	3 : 0.02	] : 0.02	^ : 0.02	f : 0.02	
= : 0.52	c : 0.19	2 : 0.10	i : 0.04	3 : 0.04	a : 0.02	] : 0.02	^ : 0.02	f : 0.02	
= : 0.56	c : 0.15	i : 0.13	b : 0.04	2 : 0.02	] : 0.02	3 : 0.02	^ : 0.02	f : 0.02	
= : 0.71	i : 0.13	b : 0.04	2 : 0.02	c : 0.02	3 : 0.02	^ : 0.02	f : 0.02	
= : 0.76	i : 0.13	] : 0.04	[ : 0.02	c : 0.02	f : 0.02	
= : 0.73	i : 0.15	2 : 0.02	a : 0.02	b : 0.02	c : 0.02	f : 0.02	
= : 0.73	i : 0.15	2 : 0.04	b : 0.02	c : 0.02	] : 0.02	
= : 0.76	i : 0.15	g : 0.02	2 : 0.02	[ : 0.02	4 : 0.02	
= : 0.76	i : 0.13	] : 0.04	g : 0.02	b : 0.02	4 : 0.02	
= : 0.67	i : 0.10	c : 0.08	] : 0.04	g : 0.02	b : 0.02	4 : 0.02	e : 0.02	
= : 0.56	c : 0.10	i : 0.10	] : 0.06	f : 0.04	g : 0.02	! : 0.02	[ : 0.02	4 : 0.02	e : 0.02	
= : 0.49	c : 0.13	] : 0.10	i : 0.08	f : 0.04	b : 0.04	g : 0.02	: : 0.02	! : 0.02	e : 0.02	
= : 0.52	i : 0.13	] : 0.08	f : 0.04	: : 0.04	c : 0.04	b : 0.04	g : 0.02	d : 0.02	4 : 0.02	e : 0.02	

#score	973.4613977652431
#seq	46
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_CDS_m3_run2.txt

#BEAR
[eeeeettttttttttteeeee]	chr16:84214833-84215126(-)$1	293	169	192	23.4494
ffffffyyyyyyyyyyyyyyyyf	chr16:89882185-89882433(-)$1	248	77	100	19.8608
feeeeettttttttttteeeee5	chr7:4830009-4830331(+)$1	322	150	173	22.3683
:eeeeettttttttttteeeee:	chr16:70698876-70699099(-)$1	223	65	88	21.1872
ffffffvvvvvvvvvvvvvffff	chr11:73363917-73364170(+)$1	253	39	62	22.3327
======uuuuuuuuuuuu=====	chr17:7011056-7011268(-)$1	212	160	183	23.4996
ggggggwwwwwwwwwwwwwwggg	chr10:21823473-21823723(+)$1	250	46	69	21.2702
dd!!bbvvvvvvvvvvvvvbb22	chr20:25397632-25397924(+)$1	292	72	95	21.5828
=eeeeeuuuuuuuuuuuueeeee	chr10:102305592-102305898(+)$1	306	244	267	23.0093
iiiiiitttttttttttiiiiii	chr2:27656512-27656763(+)$1	251	192	215	23.2179
b[bbvvvvvvvvvvvvvbb]bb]	chr6:31759962-31760177(-)$1	215	170	193	19.8815
ggggggtttttttttttgggggg	chr12:133423537-133423821(-)$1	284	27	50	23.4321
fffffftttttttttttffffff	chr19:13008016-13008237(+)$1	221	130	153	22.7815
eeeeevvvvvvvvvvvvveeeee	chr1:10342446-10342690(+)$1	244	17	40	22.4917
ggggggtttttttttttgggggg	chr17:76799696-76799936(-)$1	240	143	166	23.4321
ggggggyyyyyyyyyyyyyyyyg	chr11:65375631-65375871(-)$1	240	32	55	20.3140
ggggggvvvvvvvvvvvvvgggg	chr11:62361632-62361853(-)$1	221	58	81	22.9940
!!ddddyyyyyyyyyyyyyyyyd	chrX:70755929-70756131(+)$1	202	11	34	19.8235
======uuuuuuuuuuuu=====	chr16:89871592-89871852(-)$1	260	41	64	23.4996
eeeeeuuuuuuuuuuuueeeee:	chr17:79827111-79827365(-)$1	254	138	161	21.2007
dddd[attttttttttta]dddd	chr5:175958873-175959106(-)$1	233	105	128	22.8227
dddwwwwwwwwwwwwwwdddd]c	chr4:99969781-99970032(+)$1	251	80	103	19.3275
gggggguuuuuuuuuuuuggggg	chr2:27884890-27885188(-)$1	298	43	66	23.3240
ggg[bbuuuuuuuuuuuubb]gg	chr1:46745016-46745306(-)$1	290	189	212	22.5731
""ddddtttttttttttdddd22	chr11:62543792-62544043(+)$1	251	222	245	22.5411
hhh[bbvvvvvvvvvvvvvbb]h	chr1:38040165-38040402(-)$1	237	152	175	21.3362
ggggggtttttttttttgggggg	chr14:75368798-75369011(+)$1	213	81	104	23.4321
e[ddddtttttttttttdddd22	chr8:48625131-48625430(+)$1	299	176	199	22.6888
[ddddvvvvvvvvvvvvvdddd]	chr6:158487375-158487588(+)$1	213	25	48	22.3615
Eeeeeeuuuuuuuuuuuueeeee	chrX:18918686-18918917(-)$1	231	11	34	21.9534
cc[ccctttttttttttcccccc	chr1:979443-979737(+)$1	294	250	273	23.1614
"eeeeettttttttttteeeeee	chr3:48716013-48716269(-)$1	256	213	236	23.0931
gggggguuuuuuuuuuuuggggg	chr11:68696592-68696844(+)$1	252	29	52	23.3240
iiiiiiuuuuuuuuuuuuiiiii	chr18:2921435-2921679(-)$1	244	25	48	23.1718
!!ddddvvvvvvvvvvvvvdddd	chr11:134064462-134064727(-)$1	265	222	245	22.2556
ee:ccctttttttttttcccccc	chr2:233697571-233697848(+)$1	277	135	158	22.0771
fffffuuuuuuuuuuuuffffff	chr1:33486859-33487103(-)$1	244	94	117	21.7818
fffffftttttttttttffffff	chr22:38168553-38168880(+)$1	327	300	323	22.7815
ccddddtttttttttttdddd]c	chr14:61482534-61482778(+)$1	244	66	89	22.7712
ffffffvvvvvvvvvvvvvffff	chr12:48387141-48387384(-)$1	243	77	100	22.3327
ccc[bbtttttttttttbb22cc	chr16:67995503-67995709(-)$1	206	172	195	21.9733
c[ddddtttttttttttdddd22	chr2:69555297-69555538(-)$1	241	158	181	22.7295
fffffuuuuuuuuuuuuffffff	chr17:729100-729369(-)$1	269	60	83	21.7818
[ddddvvvvvvvvvvvvvdddd]	chr6:31727111-31727386(+)$1	275	44	67	22.3615
eee!!attttttttttta22eee	chr19:18649024-18649288(-)$1	264	21	44	22.9096
ddd[bbuuuuuuuuuuuubb]dd	chr19:8321018-8321242(+)$1	224	82	105	21.8968
ffffffvvvvvvvvvvvvvffff	chr12:121779720-121779973(-)$1	253	226	249	22.3327
[cccvvvvvvvvvvvvvccca33	chr17:73487841-73488100(+)$1	259	67	90	21.8288
[eeeeettttttttttteeeee]	chr19:10905980-10906296(+)$1	316	182	205	23.4494
ddd[bbtttttttttttbb]ddd	chr1:100733618-100733886(+)$1	268	102	125	22.1246
ee[cccuuuuuuuuuuuuccc22	chr16:29997508-29997771(+)$1	263	22	45	22.8901
ddddddwwwwwwwwwwwwwwddd	chr7:74005052-74005279(+)$1	227	132	155	20.2820
fffffftttttttttttffffff	chr15:31222641-31222896(+)$1	255	84	107	22.7815
d!!ccctttttttttttccc22d	chr10:103559098-103559309(-)$1	211	156	179	22.7825

#otherMatches

#Seq PSSM
GGAGUGAAGAUGCUGGACACUCA	chr16:84214833-84215126(-)$1	293	169	192	23.4494
GCACAGAAAUUAAAGGAAUCAGC	chr16:89882185-89882433(-)$1	248	77	100	19.8608
CUGCUGGAGUUCCUGGGCAGCGU	chr7:4830009-4830331(+)$1	322	150	173	22.3683
AGUGGUCCCCCUGACCUGCCACA	chr16:70698876-70699099(-)$1	223	65	88	21.1872
UGGGGGCCCAAUUCACCCACCCC	chr11:73363917-73364170(+)$1	253	39	62	22.3327
ugugcgguguguguaguguguac	chr17:7011056-7011268(-)$1	212	160	183	23.4996
AAGCACUAAUCGGCUUGCAUGUG	chr10:21823473-21823723(+)$1	250	46	69	21.2702
UACAUAUUUUUUUUCUUUUUAAA	chr20:25397632-25397924(+)$1	292	72	95	21.5828
UGGGAGCUUUCUUUUCCAUUCCC	chr10:102305592-102305898(+)$1	306	244	267	23.0093
ACUGAUGUUAGAGAGGAAUUGGU	chr2:27656512-27656763(+)$1	251	192	215	23.2179
CGGGGAAAAGAAAGGUACUAGGA	chr6:31759962-31760177(-)$1	215	170	193	19.8815
GAAAUGUUUUCUCUCGUUAUUUC	chr12:133423537-133423821(-)$1	284	27	50	23.4321
CCAGCUGAUUCAGAAGAAGCUGG	chr19:13008016-13008237(+)$1	221	130	153	22.7815
UGGGGUCCCUCACUUCAUCCCCA	chr1:10342446-10342690(+)$1	244	17	40	22.4917
CCUCCCACAGCACAUCAGGGAGG	chr17:76799696-76799936(-)$1	240	143	166	23.4321
UGGCACAAAACCACACAAAUGAG	chr11:65375631-65375871(-)$1	240	32	55	20.3140
CGUCAGAAACUAAACCCAGCUGA	chr11:62361632-62361853(-)$1	221	58	81	22.9940
AUACCAUAUUUUUACAUUUUUUU	chrX:70755929-70756131(+)$1	202	11	34	19.8235
UGUGUCUCCAGCCAUCCCGACAU	chr16:89871592-89871852(-)$1	260	41	64	23.4996
CCGGAUAAAAAUCUCUUUCCGGG	chr17:79827111-79827365(-)$1	254	138	161	21.2007
GGCAGAACCCCAUCCCCUGUGCC	chr5:175958873-175959106(-)$1	233	105	128	22.8227
GAAUUUUCUUUUUUCCUUUCAGU	chr4:99969781-99970032(+)$1	251	80	103	19.3275
aaggaucucacauuaucagucuu	chr2:27884890-27885188(-)$1	298	43	66	23.3240
UUGACCUAAAAACUCACUGGAUA	chr1:46745016-46745306(-)$1	290	189	212	22.5731
UGUGGUGAGACAUUAAGACCAAA	chr11:62543792-62544043(+)$1	251	222	245	22.5411
UGAGAAUUUAGACUGAUACUUGU	chr1:38040165-38040402(-)$1	237	152	175	21.3362
UUACCUUUCCUCUCUGUAGGUAG	chr14:75368798-75369011(+)$1	213	81	104	23.4321
CCCAGGCUCCCCAAAACCCUGCU	chr8:48625131-48625430(+)$1	299	176	199	22.6888
GCCUCAUCUGUCUUUUUGGAGGA	chr6:158487375-158487588(+)$1	213	25	48	22.3615
GGCCCUGGAUUAAGAGAGAGGGC	chrX:18918686-18918917(-)$1	231	11	34	21.9534
ACACUGACACCACCCUCCAGGUG	chr1:979443-979737(+)$1	294	250	273	23.1614
AUGAUGGCUCUCAUUGACAUCAC	chr3:48716013-48716269(-)$1	256	213	236	23.0931
GGAGACUCCCGGCUCCCUGUUUC	chr11:68696592-68696844(+)$1	252	29	52	23.3240
UUUUCUUAGAGAAGUGAUAGAAA	chr18:2921435-2921679(-)$1	244	25	48	23.1718
AAAGGAAUAUUUUUUAAACUCUU	chr11:134064462-134064727(-)$1	265	222	245	22.2556
GCGGCAGAAGGAGUUAAUGCGCC	chr2:233697571-233697848(+)$1	277	135	158	22.0771
CAGCAUCCCAGACUCUCUGCUGA	chr1:33486859-33487103(-)$1	244	94	117	21.7818
aggccacuuccuucuucuggccu	chr22:38168553-38168880(+)$1	327	300	323	22.7815
CAUUGUAAUUUCUCUUAACAGCU	chr14:61482534-61482778(+)$1	244	66	89	22.7712
ACCUUGUGCAUCAUUUUUCCAGG	chr12:48387141-48387384(-)$1	243	77	100	22.3327
GGCGCCAAAGAGCAUGAGGAGGC	chr16:67995503-67995709(-)$1	206	172	195	21.9733
CACCUUGGGGAUCAAAGAGGGGA	chr2:69555297-69555538(-)$1	241	158	181	22.7295
UGGAACAAAUACCGAAUUUCCAA	chr17:729100-729369(-)$1	269	60	83	21.7818
AGGACCAAGAGAUGCAAAGUCCA	chr6:31727111-31727386(+)$1	275	44	67	22.3615
UGCCUGCUCCCACCCAACUAGCA	chr19:18649024-18649288(-)$1	264	21	44	22.9096
GACACCCAUUUCCCUGCAGGAGU	chr19:8321018-8321242(+)$1	224	82	105	21.8968
CCUGUGAUGUGUGUUGUGGCAUA	chr12:121779720-121779973(-)$1	253	226	249	22.3327
CAGCAAACACCCAUCUGGCUCCA	chr17:73487841-73488100(+)$1	259	67	90	21.8288
CGACCCCCCAGCUAAUUGGGUCA	chr19:10905980-10906296(+)$1	316	182	205	23.4494
UCUGGACUGGAAAUGAUUCGAGA	chr1:100733618-100733886(+)$1	268	102	125	22.1246
CUCUCACUUCCUUGAUACUGACC	chr16:29997508-29997771(+)$1	263	22	45	22.8901
GGUCCCUUAUAAACUAAUCCGGG	chr7:74005052-74005279(+)$1	227	132	155	20.2820
GUCCUGUGUUUUGUGUUCAGGAU	chr15:31222641-31222896(+)$1	255	84	107	22.7815
GCAGCACCCUCUUUAAAUGCCAC	chr10:103559098-103559309(-)$1	211	156	179	22.7825

#DB
.(((((...........))))).	chr16:84214833-84215126(-)$1	1	169	192	23.4494
((((((................)	chr16:89882185-89882433(-)$1	1	77	100	19.8608
((((((...........))))).	chr7:4830009-4830331(+)$1	1	150	173	22.3683
.(((((...........))))).	chr16:70698876-70699099(-)$1	1	65	88	21.1872
((((((.............))))	chr11:73363917-73364170(+)$1	1	39	62	22.3327
((((((............)))))	chr17:7011056-7011268(-)$1	1	160	183	23.4996
((((((..............)))	chr10:21823473-21823723(+)$1	1	46	69	21.2702
((..((.............))..	chr20:25397632-25397924(+)$1	1	72	95	21.5828
((((((............)))))	chr10:102305592-102305898(+)$1	1	244	267	23.0093
((((((...........))))))	chr2:27656512-27656763(+)$1	1	192	215	23.2179
(.((.............)).)).	chr6:31759962-31760177(-)$1	1	170	193	19.8815
((((((...........))))))	chr12:133423537-133423821(-)$1	1	27	50	23.4321
((((((...........))))))	chr19:13008016-13008237(+)$1	1	130	153	22.7815
(((((.............)))))	chr1:10342446-10342690(+)$1	1	17	40	22.4917
((((((...........))))))	chr17:76799696-76799936(-)$1	1	143	166	23.4321
((((((................)	chr11:65375631-65375871(-)$1	1	32	55	20.3140
((((((.............))))	chr11:62361632-62361853(-)$1	1	58	81	22.9940
..((((................)	chrX:70755929-70756131(+)$1	1	11	34	19.8235
((((((............)))))	chr16:89871592-89871852(-)$1	1	41	64	23.4996
(((((............))))).	chr17:79827111-79827365(-)$1	1	138	161	21.2007
((((.(...........).))))	chr5:175958873-175959106(-)$1	1	105	128	22.8227
(((..............)))).)	chr4:99969781-99970032(+)$1	1	80	103	19.3275
((((((............)))))	chr2:27884890-27885188(-)$1	1	43	66	23.3240
(((.((............)).))	chr1:46745016-46745306(-)$1	1	189	212	22.5731
..((((...........))))..	chr11:62543792-62544043(+)$1	1	222	245	22.5411
(((.((.............)).)	chr1:38040165-38040402(-)$1	1	152	175	21.3362
((((((...........))))))	chr14:75368798-75369011(+)$1	1	81	104	23.4321
(.((((...........))))..	chr8:48625131-48625430(+)$1	1	176	199	22.6888
.((((.............)))).	chr6:158487375-158487588(+)$1	1	25	48	22.3615
((((((............)))))	chrX:18918686-18918917(-)$1	1	11	34	21.9534
((.(((...........))))))	chr1:979443-979737(+)$1	1	250	273	23.1614
.(((((...........))))))	chr3:48716013-48716269(-)$1	1	213	236	23.0931
((((((............)))))	chr11:68696592-68696844(+)$1	1	29	52	23.3240
((((((............)))))	chr18:2921435-2921679(-)$1	1	25	48	23.1718
..((((.............))))	chr11:134064462-134064727(-)$1	1	222	245	22.2556
)).(((...........)))(((	chr2:233697571-233697848(+)$1	1	135	158	22.0771
(((((............))))))	chr1:33486859-33487103(-)$1	1	94	117	21.7818
((((((...........))))))	chr22:38168553-38168880(+)$1	1	300	323	22.7815
((((((...........)))).)	chr14:61482534-61482778(+)$1	1	66	89	22.7712
((((((.............))))	chr12:48387141-48387384(-)$1	1	77	100	22.3327
(((.((...........))..))	chr16:67995503-67995709(-)$1	1	172	195	21.9733
(.((((...........))))..	chr2:69555297-69555538(-)$1	1	158	181	22.7295
(((((............))))))	chr17:729100-729369(-)$1	1	60	83	21.7818
.((((.............)))).	chr6:31727111-31727386(+)$1	1	44	67	22.3615
(((..(...........)..)))	chr19:18649024-18649288(-)$1	1	21	44	22.9096
(((.((............)).))	chr19:8321018-8321242(+)$1	1	82	105	21.8968
((((((.............))))	chr12:121779720-121779973(-)$1	1	226	249	22.3327
.(((.............))))..	chr17:73487841-73488100(+)$1	1	67	90	21.8288
.(((((...........))))).	chr19:10905980-10906296(+)$1	1	182	205	23.4494
(((.((...........)).)))	chr1:100733618-100733886(+)$1	1	102	125	22.1246
((.(((............)))..	chr16:29997508-29997771(+)$1	1	22	45	22.8901
((((((..............)))	chr7:74005052-74005279(+)$1	1	132	155	20.2820
((((((...........))))))	chr15:31222641-31222896(+)$1	1	84	107	22.7815
(..(((...........)))..)	chr10:103559098-103559309(-)$1	1	156	179	22.7825

#PSSM
f : 0.18	g : 0.16	d : 0.12	e : 0.11	[ : 0.09	c : 0.07	= : 0.05	i : 0.03	! : 0.03	" : 0.03	: : 0.01	b : 0.01	h : 0.01	E : 0.01	
e : 0.22	f : 0.16	g : 0.16	d : 0.14	c : 0.07	[ : 0.05	! : 0.05	= : 0.03	i : 0.03	" : 0.01	h : 0.01	
d : 0.24	e : 0.18	f : 0.16	g : 0.16	= : 0.03	! : 0.03	i : 0.03	[ : 0.03	c : 0.03	b : 0.01	h : 0.01	: : 0.01	
d : 0.18	e : 0.16	f : 0.16	g : 0.14	[ : 0.09	c : 0.09	= : 0.03	! : 0.03	i : 0.03	b : 0.01	w : 0.01	
e : 0.16	f : 0.16	d : 0.16	g : 0.14	b : 0.11	c : 0.07	= : 0.03	i : 0.03	v : 0.03	[ : 0.01	w : 0.01	! : 0.01	
g : 0.14	e : 0.12	f : 0.12	d : 0.12	b : 0.11	v : 0.09	c : 0.07	u : 0.05	= : 0.03	i : 0.03	a : 0.03	w : 0.01	
t : 0.42	u : 0.24	v : 0.22	y : 0.05	w : 0.05	
t : 0.42	u : 0.24	v : 0.22	y : 0.05	w : 0.05	
t : 0.42	u : 0.24	v : 0.22	y : 0.05	w : 0.05	
t : 0.42	u : 0.24	v : 0.22	y : 0.05	w : 0.05	
t : 0.42	u : 0.24	v : 0.22	y : 0.05	w : 0.05	
t : 0.42	u : 0.24	v : 0.22	y : 0.05	w : 0.05	
t : 0.42	u : 0.24	v : 0.22	y : 0.05	w : 0.05	
t : 0.42	u : 0.24	v : 0.22	y : 0.05	w : 0.05	
t : 0.42	u : 0.24	v : 0.22	y : 0.05	w : 0.05	
t : 0.42	u : 0.24	v : 0.22	y : 0.05	w : 0.05	
t : 0.42	u : 0.24	v : 0.22	y : 0.05	w : 0.05	
v : 0.18	u : 0.18	e : 0.11	f : 0.09	d : 0.09	c : 0.07	y : 0.05	b : 0.05	g : 0.05	w : 0.03	a : 0.03	i : 0.01	
e : 0.16	v : 0.12	d : 0.12	b : 0.09	g : 0.09	f : 0.09	c : 0.09	y : 0.05	= : 0.03	w : 0.03	i : 0.03	] : 0.01	2 : 0.01	
e : 0.16	d : 0.16	f : 0.14	g : 0.11	c : 0.09	b : 0.07	y : 0.05	= : 0.03	w : 0.03	i : 0.03	] : 0.03	2 : 0.03	
d : 0.20	e : 0.18	f : 0.14	g : 0.12	y : 0.05	b : 0.05	c : 0.05	= : 0.03	i : 0.03	] : 0.03	2 : 0.03	a : 0.01	
e : 0.18	f : 0.14	g : 0.14	d : 0.12	2 : 0.11	y : 0.05	] : 0.05	c : 0.05	= : 0.03	i : 0.03	b : 0.01	3 : 0.01	
f : 0.16	g : 0.16	d : 0.12	] : 0.09	2 : 0.09	e : 0.09	c : 0.09	: : 0.03	= : 0.03	i : 0.03	5 : 0.01	h : 0.01	3 : 0.01	

#score	1202.8665937223627
#seq	54
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_transcript_m3_run1.txt

#BEAR
ffffuuuuuuuuuuuuffffff	chr22:47400708-47400996(+)$1	288	37	59	22.3902
dd[bbtttttttttttbb]ddd	chr11:9207299-9207570(-)$1	271	56	78	21.5974
ffffuuuuuuuuuuuuffffff	chr16:81505301-81505520(+)$1	219	174	196	22.3902
hhhhuuuuuuuuuuuuhhhhhh	chr5:65373690-65373949(+)$1	259	84	106	21.0501
[cccwwwwwwwwwwwwwwcccc	chr3:60399202-60399545(-)$1	343	61	83	21.7783
dddduuuuuuuuuuuudddd55	chr5:53262032-53262292(-)$1	260	74	96	22.0738
ddddwwwwwwwwwwwwwwdddd	chr21:46899048-46899263(+)$1	215	171	193	21.9975
dd[auuuuuuuuuuuua]dddd	chr22:17103377-17103633(+)$1	256	106	128	23.3660
eeeeettttttttttteeeeed	chr19:48166955-48167390(+)$1	435	240	262	22.5989
gggauuuuuuuuuuuua]gggg	chr7:66224728-66225008(+)$1	280	217	239	23.1315
!cccuuuuuuuuuuuuccc333	chr22:50024940-50025159(-)$1	219	48	70	23.4290
eeeeuuuuuuuuuuuueeeee8	chr1:230411841-230412097(+)$1	256	183	205	23.3725
gggggtttttttttttgggggg	chr11:5410078-5410358(-)$1	280	83	105	21.8456
ffffwwwwwwwwwwwwwwffff	chr17:40373726-40373948(-)$1	222	37	59	21.1166
eeeeettttttttttteeeee:	chr3:47899830-47900130(-)$1	300	57	79	21.9765
d[bbuuuuuuuuuuuubb22dd	chr7:102020701-102020954(+)$1	253	106	128	21.7365
gggguuuuuuuuuuuugggggg	chr13:53040098-53040348(+)$1	250	37	59	22.9284
dddduuuuuuuuuuuudddd::	chr22:20052434-20052651(+)$1	217	3	25	21.7773
eeewwwwwwwwwwwwwweeeee	chr17:78716390-78716658(+)$1	268	49	71	22.0050
g[ccctttttttttttcccggg	chr3:105496795-105497113(-)$1	318	234	256	22.3703
ddddvvvvvvvvvvvvvdddd]	chr3:43428044-43428321(-)$1	277	211	233	23.5814
dddduuuuuuuuuuuudddd33	chr22:47400796-47401094(+)$1	298	205	227	23.6173
ddddvvvvvvvvvvvvvdddd:	chr14:37577734-37578029(-)$1	295	261	283	22.7591
[a[auuuuuuuuuuuua]afff	chr9:136131927-136132155(-)$1	228	130	152	22.8626
[cccvvvvvvvvvvvvvccccc	chr9:74746476-74746764(+)$1	288	260	282	23.1729
yyyyyyyyyyyyyyyygggggg	chr6:161509900-161510179(+)$1	279	70	92	18.7937
eeeevvvvvvvvvvvvveeeee	chr21:46928476-46928730(-)$1	254	78	100	23.4787
eeeevvvvvvvvvvvvveeeee	chr22:50003562-50003784(-)$1	222	35	57	23.4787
eeeeettttttttttteeeee:	chr19:15943282-15943533(+)$1	251	161	183	21.9765
!bbvvvvvvvvvvvvvbb]ddd	chr2:168720360-168720611(-)$1	251	179	201	21.5434
eeeeettttttttttteeeee4	chrX:109268863-109269221(+)$1	358	52	74	22.7767
eeeeettttttttttteeeee]	chr7:26680064-26680342(+)$1	278	60	82	22.7988
eeeeuuuuuuuuuuuueeeee:	chr9:128093986-128094239(+)$1	253	200	222	22.8858
eeeeuuuuuuuuuuuueeeee2	chr2:228400439-228400726(+)$1	287	202	224	23.5090
dddduuuuuuuuuuuudddd00	chr21:45731107-45731378(+)$1	271	182	204	22.8292
[cccuuuuuuuuuuuuccc]dd	chr16:81703344-81703638(+)$1	294	174	196	23.1979
eeeeuuuuuuuuuuuueeeeeb	chr10:35671748-35672048(+)$1	300	112	134	23.4024
ddddtttttttttttdddd22=	chr22:50004526-50004766(-)$1	240	97	119	21.3076
c[bbuuuuuuuuuuuubb]ccc	chr7:102020645-102020901(+)$1	256	69	91	22.0986
ffffftttttttttttffffff	chr19:1419591-1419969(+)$1	378	34	56	21.4409
"cccuuuuuuuuuuuuccc333	chr3:38041197-38041482(+)$1	285	73	95	23.2724
!!ccctttttttttttccc22d	chr19:13114005-13114301(+)$1	296	259	281	21.9656
ddddvvvvvvvvvvvvvdddd3	chr2:178215957-178216223(-)$1	266	222	244	23.6183
ff[bbtttttttttttbb22ff	chr19:10432505-10432795(-)$1	290	93	115	20.7613
ddddwwwwwwwwwwwwwwdddd	chr9:138915768-138916126(-)$1	358	191	213	21.9975
ddddvvvvvvvvvvvvvdddd4	chr17:64440914-64441263(+)$1	349	59	81	23.5593
eeeeettttttttttteeeee2	chr1:51157816-51158097(-)$1	281	182	204	22.5997
gggguuuuuuuuuuuugggggg	chr1:31345031-31345325(-)$1	294	250	272	22.9284
eeeeuuuuuuuuuuuueeeee:	chr12:94184613-94184865(+)$1	252	227	249	22.8858
ddddvvvvvvvvvvvvvdddde	chr4:151592007-151592320(-)$1	313	268	290	23.3819
ffffuuuuuuuuuuuuffffff	chr9:96411906-96412242(+)$1	336	19	41	22.3902
dddduuuuuuuuuuuudddd]b	chr4:145961035-145961376(-)$1	341	159	181	23.2801
[cccvvvvvvvvvvvvvccc]b	chr18:75696941-75697148(-)$1	207	128	150	23.0419
ddddwwwwwwwwwwwwwwdddd	chr9:125995573-125995873(-)$1	300	179	201	21.9975
[cccwwwwwwwwwwwwwwccc]	chr5:134263566-134263776(-)$1	210	18	40	21.9022
ffffuuuuuuuuuuuuffffff	chr2:148729631-148729969(-)$1	338	67	89	22.3902
ffffvvvvvvvvvvvvvfffff	chr12:131521047-131521360(+)$1	313	86	108	22.4142
ddddvvvvvvvvvvvvvdddd]	chr22:48043962-48044182(+)$1	220	62	84	23.5814
ee[bbtttttttttttbbeeee	chr4:1019599-1019848(+)$1	249	191	213	21.8282
[ddddtttttttttttdddd]g	chr7:120882959-120883237(+)$1	278	199	221	22.5246
cddddtttttttttttdddd::	chr8:143394111-143394373(-)$1	262	104	126	20.7026

#otherMatches

#Seq PSSM
uacauacacacaccccuguaua	chr22:47400708-47400996(+)$1	288	37	59	22.3902
UUAUcacagacacagagacaau	chr11:9207299-9207570(-)$1	271	56	78	21.5974
ccuggacaagaugcagcaggac	chr16:81505301-81505520(+)$1	219	174	196	22.3902
uugagcauuaugagaaucaaag	chr5:65373690-65373949(+)$1	259	84	106	21.0501
AUGGACAACUACAUACUACCAG	chr3:60399202-60399545(-)$1	343	61	83	21.7783
cauuacaaaggauacggaugaa	chr5:53262032-53262292(-)$1	260	74	96	22.0738
ccacacauuacaccacacgugg	chr21:46899048-46899263(+)$1	215	171	193	21.9975
UGCGUCCUCUCUCUCUCUCAGa	chr22:17103377-17103633(+)$1	256	106	128	23.3660
uuugauuucacaaccuucaaag	chr19:48166955-48167390(+)$1	435	240	262	22.5989
uugcacaaaauaucuagacaag	chr7:66224728-66225008(+)$1	280	217	239	23.1315
AUGCCCCGAAACACUUGCACCC	chr22:50024940-50025159(-)$1	219	48	70	23.4290
CCCUUUCUCAAGGCAUGGGGUA	chr1:230411841-230412097(+)$1	256	183	205	23.3725
auauugauaaauaacaaauaua	chr11:5410078-5410358(-)$1	280	83	105	21.8456
augcuccucuaauuccauguau	chr17:40373726-40373948(-)$1	222	37	59	21.1166
CCCCUCACCUCUCCCAAGGGGA	chr3:47899830-47900130(-)$1	300	57	79	21.9765
UUACAUUCACUAAAACGUUCAC	chr7:102020701-102020954(+)$1	253	106	128	21.7365
auauacacacauacacauauau	chr13:53040098-53040348(+)$1	250	37	59	22.9284
GUGGAUACACCUGAGCCCACUC	chr22:20052434-20052651(+)$1	217	3	25	21.7773
uguccacacauauaaacacaug	chr17:78716390-78716658(+)$1	268	49	71	22.0050
GUACCUAUUGAUUUCUGGUCAU	chr3:105496795-105497113(-)$1	318	234	256	22.3703
CCGUUUUCUCAGACACCAUGGA	chr3:43428044-43428321(-)$1	277	211	233	23.5814
UGUAUUcacacacucuuacaca	chr22:47400796-47401094(+)$1	298	205	227	23.6173
CAGUACUAGCCUUUUAAACUGU	chr14:37577734-37578029(-)$1	295	261	283	22.7591
AGGGGGAGUGAGCAGACGCCAG	chr9:136131927-136132155(-)$1	228	130	152	22.8626
acuauaccccuuuauauuaguc	chr9:74746476-74746764(+)$1	288	260	282	23.1729
cccucaucuuauuucugucuua	chr6:161509900-161510179(+)$1	279	70	92	18.7937
cugaaugaaAGAAUGAAUCAGC	chr21:46928476-46928730(-)$1	254	78	100	23.4787
uguggguuggguuucaacauag	chr22:50003562-50003784(-)$1	222	35	57	23.4787
ccuuucauucucucaaaaaggc	chr19:15943282-15943533(+)$1	251	161	183	21.9765
AACAAAAGUAGGCACAGUAUUA	chr2:168720360-168720611(-)$1	251	179	201	21.5434
GCUGGUUUGCUGCCUUUCAGUU	chrX:109268863-109269221(+)$1	358	52	74	22.7767
UACAUCUACAAGUUCCAUGUAU	chr7:26680064-26680342(+)$1	278	60	82	22.7988
CUCUUAUCUUCUAUUUAGAGGC	chr9:128093986-128094239(+)$1	253	200	222	22.8858
cuuuauaauaauucugagagau	chr2:228400439-228400726(+)$1	287	202	224	23.5090
cauggagacagauacacaugga	chr21:45731107-45731378(+)$1	271	182	204	22.8292
CACCUGCUCAUCAGAUGGUCCU	chr16:81703344-81703638(+)$1	294	174	196	23.1979
GAGUCAACCAUACUACACUCUG	chr10:35671748-35672048(+)$1	300	112	134	23.4024
ccauaauauacacacauggaca	chr22:50004526-50004766(-)$1	240	97	119	21.3076
ucucaaaaaaaaaaaaGGAACA	chr7:102020645-102020901(+)$1	256	69	91	22.0986
GGAAUCCAAGGUUCAUAUUCCA	chr19:1419591-1419969(+)$1	378	34	56	21.4409
AGUACACAACCACAAAUAUGAA	chr3:38041197-38041482(+)$1	285	73	95	23.2724
ACACACUCAGUCAUAAUGUCAG	chr19:13114005-13114301(+)$1	296	259	281	21.9656
UUGUCUCACACACACACACAAC	chr2:178215957-178216223(-)$1	266	222	244	23.6183
cauacacCCAUGCUCCGUCCUG	chr19:10432505-10432795(-)$1	290	93	115	20.7613
GGCCCUCACUCACACUCUGGCC	chr9:138915768-138916126(-)$1	358	191	213	21.9975
UGCUUGUUUCUUUUCUUAGCAU	chr17:64440914-64441263(+)$1	349	59	81	23.5593
caguaaauacuucaagugcugg	chr1:51157816-51158097(-)$1	281	182	204	22.5997
CCAGCUUUCAGGCUUACUGGGG	chr1:31345031-31345325(-)$1	294	250	272	22.9284
ACUAUAUUauguaaauuaguac	chr12:94184613-94184865(+)$1	252	227	249	22.8858
uccuuuauauguauccuaggau	chr4:151592007-151592320(-)$1	313	268	290	23.3819
auggacacaccaacacucauga	chr9:96411906-96412242(+)$1	336	19	41	22.3902
AGUUUUCAUUACAUCUAACUGU	chr4:145961035-145961376(-)$1	341	159	181	23.2801
auguaaacacacaauacacaag	chr18:75696941-75697148(-)$1	207	128	150	23.0419
acuuguuaacacuucuuaaagu	chr9:125995573-125995873(-)$1	300	179	201	21.9975
CUAGACUACGUACAUAACCUAA	chr5:134263566-134263776(-)$1	210	18	40	21.9022
cccuuuguuauagguuagggaa	chr2:148729631-148729969(-)$1	338	67	89	22.3902
GUCUCACUcacugcaccgggcc	chr12:131521047-131521360(+)$1	313	86	108	22.4142
uccaaauACAUUUUCCCUGGAU	chr22:48043962-48044182(+)$1	220	62	84	23.5814
cuagucacacacacacgcagac	chr4:1019599-1019848(+)$1	249	191	213	21.8282
AAGUUUUUUCCUUUCUAACUCA	chr7:120882959-120883237(+)$1	278	199	221	22.5246
CAGGCUCAUCAUCACUGCCUUC	chr8:143394111-143394373(-)$1	262	104	126	20.7026

#DB
((((............))))))	chr22:47400708-47400996(+)$1	1	37	59	22.3902
((.((...........)).)))	chr11:9207299-9207570(-)$1	1	56	78	21.5974
((((............))))))	chr16:81505301-81505520(+)$1	1	174	196	22.3902
((((............))))))	chr5:65373690-65373949(+)$1	1	84	106	21.0501
.(((..............))))	chr3:60399202-60399545(-)$1	1	61	83	21.7783
((((............))))..	chr5:53262032-53262292(-)$1	1	74	96	22.0738
((((..............))))	chr21:46899048-46899263(+)$1	1	171	193	21.9975
((.(............).))))	chr22:17103377-17103633(+)$1	1	106	128	23.3660
(((((...........))))))	chr19:48166955-48167390(+)$1	1	240	262	22.5989
((((............).))))	chr7:66224728-66225008(+)$1	1	217	239	23.1315
.(((............)))...	chr22:50024940-50025159(-)$1	1	48	70	23.4290
((((............))))).	chr1:230411841-230412097(+)$1	1	183	205	23.3725
(((((...........))))))	chr11:5410078-5410358(-)$1	1	83	105	21.8456
((((..............))))	chr17:40373726-40373948(-)$1	1	37	59	21.1166
(((((...........))))).	chr3:47899830-47900130(-)$1	1	57	79	21.9765
(.((............))..))	chr7:102020701-102020954(+)$1	1	106	128	21.7365
((((............))))))	chr13:53040098-53040348(+)$1	1	37	59	22.9284
((((............))))..	chr22:20052434-20052651(+)$1	1	3	25	21.7773
(((..............)))))	chr17:78716390-78716658(+)$1	1	49	71	22.0050
(.(((...........))))))	chr3:105496795-105497113(-)$1	1	234	256	22.3703
((((.............)))).	chr3:43428044-43428321(-)$1	1	211	233	23.5814
((((............))))..	chr22:47400796-47401094(+)$1	1	205	227	23.6173
((((.............)))).	chr14:37577734-37578029(-)$1	1	261	283	22.7591
.(.(............).))))	chr9:136131927-136132155(-)$1	1	130	152	22.8626
.(((.............)))))	chr9:74746476-74746764(+)$1	1	260	282	23.1729
................))))))	chr6:161509900-161510179(+)$1	1	70	92	18.7937
((((.............)))))	chr21:46928476-46928730(-)$1	1	78	100	23.4787
((((.............)))))	chr22:50003562-50003784(-)$1	1	35	57	23.4787
(((((...........))))).	chr19:15943282-15943533(+)$1	1	161	183	21.9765
.((.............)).)))	chr2:168720360-168720611(-)$1	1	179	201	21.5434
(((((...........))))).	chrX:109268863-109269221(+)$1	1	52	74	22.7767
(((((...........))))).	chr7:26680064-26680342(+)$1	1	60	82	22.7988
((((............))))).	chr9:128093986-128094239(+)$1	1	200	222	22.8858
((((............))))).	chr2:228400439-228400726(+)$1	1	202	224	23.5090
((((............))))..	chr21:45731107-45731378(+)$1	1	182	204	22.8292
.(((............))).))	chr16:81703344-81703638(+)$1	1	174	196	23.1979
((((............)))))(	chr10:35671748-35672048(+)$1	1	112	134	23.4024
((((...........))))..)	chr22:50004526-50004766(-)$1	1	97	119	21.3076
(.((............)).)))	chr7:102020645-102020901(+)$1	1	69	91	22.0986
(((((...........))))))	chr19:1419591-1419969(+)$1	1	34	56	21.4409
.(((............)))...	chr3:38041197-38041482(+)$1	1	73	95	23.2724
..(((...........)))..)	chr19:13114005-13114301(+)$1	1	259	281	21.9656
((((.............)))).	chr2:178215957-178216223(-)$1	1	222	244	23.6183
((.((...........))..))	chr19:10432505-10432795(-)$1	1	93	115	20.7613
((((..............))))	chr9:138915768-138916126(-)$1	1	191	213	21.9975
((((.............)))).	chr17:64440914-64441263(+)$1	1	59	81	23.5593
(((((...........))))).	chr1:51157816-51158097(-)$1	1	182	204	22.5997
((((............))))))	chr1:31345031-31345325(-)$1	1	250	272	22.9284
((((............))))).	chr12:94184613-94184865(+)$1	1	227	249	22.8858
((((.............)))))	chr4:151592007-151592320(-)$1	1	268	290	23.3819
((((............))))))	chr9:96411906-96412242(+)$1	1	19	41	22.3902
((((............)))).)	chr4:145961035-145961376(-)$1	1	159	181	23.2801
.(((.............))).)	chr18:75696941-75697148(-)$1	1	128	150	23.0419
((((..............))))	chr9:125995573-125995873(-)$1	1	179	201	21.9975
.(((..............))).	chr5:134263566-134263776(-)$1	1	18	40	21.9022
((((............))))))	chr2:148729631-148729969(-)$1	1	67	89	22.3902
((((.............)))))	chr12:131521047-131521360(+)$1	1	86	108	22.4142
((((.............)))).	chr22:48043962-48044182(+)$1	1	62	84	23.5814
((.((...........))))))	chr4:1019599-1019848(+)$1	1	191	213	21.8282
.((((...........)))).)	chr7:120882959-120883237(+)$1	1	199	221	22.5246
)((((...........))))..	chr8:143394111-143394373(-)$1	1	104	126	20.7026

#PSSM
d : 0.29	e : 0.24	f : 0.13	[ : 0.11	g : 0.08	! : 0.04	c : 0.03	h : 0.01	y : 0.01	" : 0.01	
d : 0.31	e : 0.24	f : 0.13	c : 0.11	g : 0.06	[ : 0.04	h : 0.01	a : 0.01	y : 0.01	b : 0.01	! : 0.01	
d : 0.27	e : 0.22	c : 0.14	f : 0.11	[ : 0.08	g : 0.06	b : 0.04	h : 0.01	y : 0.01	
d : 0.27	e : 0.21	c : 0.14	f : 0.11	b : 0.08	a : 0.04	g : 0.04	h : 0.01	w : 0.01	y : 0.01	v : 0.01	
u : 0.40	v : 0.19	w : 0.11	e : 0.09	b : 0.04	c : 0.03	d : 0.03	g : 0.01	y : 0.01	t : 0.01	f : 0.01	
u : 0.40	t : 0.26	v : 0.19	w : 0.11	y : 0.01	
u : 0.40	t : 0.26	v : 0.19	w : 0.11	y : 0.01	
u : 0.40	t : 0.26	v : 0.19	w : 0.11	y : 0.01	
u : 0.40	t : 0.26	v : 0.19	w : 0.11	y : 0.01	
u : 0.40	t : 0.26	v : 0.19	w : 0.11	y : 0.01	
u : 0.40	t : 0.26	v : 0.19	w : 0.11	y : 0.01	
u : 0.40	t : 0.26	v : 0.19	w : 0.11	y : 0.01	
u : 0.40	t : 0.26	v : 0.19	w : 0.11	y : 0.01	
u : 0.40	t : 0.26	v : 0.19	w : 0.11	y : 0.01	
u : 0.40	t : 0.26	v : 0.19	w : 0.11	y : 0.01	
u : 0.40	t : 0.24	v : 0.19	w : 0.11	y : 0.01	d : 0.01	
e : 0.18	v : 0.18	d : 0.13	w : 0.11	b : 0.09	f : 0.08	c : 0.08	g : 0.06	a : 0.04	h : 0.01	
d : 0.22	e : 0.22	c : 0.11	f : 0.09	b : 0.09	w : 0.09	g : 0.06	] : 0.04	h : 0.01	
d : 0.29	e : 0.24	c : 0.14	f : 0.11	g : 0.08	] : 0.04	2 : 0.03	h : 0.01	a : 0.01	
d : 0.31	e : 0.24	f : 0.13	g : 0.09	c : 0.08	2 : 0.06	3 : 0.03	h : 0.01	] : 0.01	
e : 0.24	d : 0.22	f : 0.14	g : 0.09	c : 0.06	3 : 0.04	] : 0.04	: : 0.03	2 : 0.03	h : 0.01	5 : 0.01	0 : 0.01	
d : 0.16	f : 0.14	g : 0.11	: : 0.11	e : 0.08	3 : 0.06	] : 0.06	c : 0.04	b : 0.04	4 : 0.03	2 : 0.03	h : 0.01	5 : 0.01	8 : 0.01	0 : 0.01	= : 0.01	

#score	1369.4693183277002
#seq	61
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_transcript_m1_run2.txt

#BEAR
f"""cccxxxxxxxxxxxxxxxccc22f	chr22:20114547-20114776(+)$1	229	80	108	22.2538
ffffff^^^^^^^^^^^^^^^^^^^^^f	chr6:109687829-109688088(-)$1	259	9	37	23.1688
ggggggg^^^^^^^^^^^^^^^^^^^^^	chr1:90059339-90059607(+)$1	268	139	167	24.1893
dffffffxxxxxxxxxxxxxxxffffff	chr14:31171231-31171488(+)$1	257	177	205	20.3188
ggg^^^^^^^^^^^^^^^^^^ggggggg	chr3:45052798-45053049(+)$1	251	91	119	21.2449
fffffbbxxxxxxxxxxxxxxxbb4444	chr20:37057418-37057661(-)$1	243	182	210	21.7355
ff[bb^^^^^^^^^^^^^^^^^^^^^^^	chr6:134308404-134308690(+)$1	286	63	91	23.8187
dd[cccyyyyyyyyyyyyyyyyccc22d	chr1:219381208-219381472(+)$1	264	47	75	22.9686
c^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:73047196-73047443(-)$1	247	34	62	23.6901
ggggggg^^^^^^^^^^^^^^^^^^^^^	chr6:43147608-43147864(+)$1	256	59	87	24.1893
ff[cccxxxxxxxxxxxxxxxccc]fff	chr16:28848306-28848549(+)$1	243	118	146	21.4611
d!!ddddwwwwwwwwwwwwwwdddd555	chr16:88817796-88818084(-)$1	288	12	40	21.7355
=======^^^^^^^^^^^^^^^^^^^^^	chr19:29031131-29031397(-)$1	266	46	74	24.4461
gggggggvvvvvvvvvvvvvgggggggD	chr10:74767789-74768028(-)$1	239	202	230	19.3990
ggg!!dddduuuuuuuuuuuudddd22g	chr17:47117373-47117628(+)$1	255	63	91	19.9873
eeeee^^^^^^^^^^^^^^^^^^eeeee	chr8:6616992-6617240(+)$1	248	155	183	22.3392
hhhhcccwwwwwwwwwwwwwwccc22hh	chr11:65194411-65194635(+)$1	224	60	88	21.2511
#ccc^^^^^^^^^^^^^^^^^^ccc444	chr12:111179828-111180063(-)$1	235	80	108	23.0401
d[eeeeewwwwwwwwwwwwwweeeee]d	chr1:236713982-236714222(-)$1	240	4	32	22.4375
h!!ccc^^^^^^^^^^^^^^^^^^^^^^	chr5:145854471-145854737(+)$1	266	63	91	24.5845
b[ddddyyyyyyyyyyyyyyyydddd]b	chrX:123042364-123042647(+)$1	283	80	108	22.3340
)))ddddxxxxxxxxxxxxxxxdddd22	chr11:11928962-11929260(+)$1	298	146	174	20.2121
ff!!bbxxxxxxxxxxxxxxxbb]ffff	chr5:114950703-114951003(-)$1	300	60	88	20.3015
=======^^^^^^^^^^^^^^^^^^^^^	chr1:223962746-223963024(+)$1	278	105	133	24.4461
ggggggg^^^^^^^^^^^^^^^^^^^^^	chr1:32636786-32637041(+)$1	255	18	46	24.1893
eeeee^^^^^^^^^^^^^^^^^^^^^^^	chr1:15392553-15392798(+)$1	245	97	125	24.2674
eeedddd^^^^^^^^^^^^^^^^^^^^^	chr8:11696102-11696318(+)$1	216	105	133	23.8979
c!!bb^^^^^^^^^^^^^^^^^^^bb22	chr1:55578670-55578915(-)$1	245	126	154	22.2829
eeeeeyyyyyyyyyyyyyyyyeeeee44	chr11:130014400-130014639(+)$1	239	82	110	22.7877
b!!eeeeeuuuuuuuuuuuueeeeebb2	chr3:195791023-195791246(-)$1	223	108	136	19.7506
gggggggwwwwwwwwwwwwwwggggggg	chr1:207866375-207866658(+)$1	283	16	44	22.3942
gggggggwwwwwwwwwwwwwwggggggg	chr3:152182700-152182973(+)$1	273	148	176	22.3942
=======xxxxxxxxxxxxxxx======	chr11:65268295-65268507(+)$1	212	175	203	22.6207
f[eeeee^^^^^^^^^^^^^^^^^^^^^	chr1:29474180-29474410(-)$1	230	99	127	24.0614
gggggbb^^^^^^^^^^^^^^^^^^^^^	chr10:43902938-43903162(-)$1	224	49	77	23.8289
ii!!cccvvvvvvvvvvvvvccc22iii	chr1:145584791-145585041(+)$1	250	168	196	21.0345
========vvvvvvvvvvvvv=======	chr8:54959788-54960078(-)$1	290	224	252	21.1968
d[eeeeevvvvvvvvvvvvveeeeeddd	chr3:185364604-185364864(-)$1	260	212	240	20.2233
gggggggwwwwwwwwwwwwwwggggggg	chr9:95018761-95019011(-)$1	250	13	41	22.3942
gffffff^^^^^^^^^^^^^^^^^^^^^	chr19:52773240-52773502(+)$1	262	174	202	23.3693
ggggggguuuuuuuuuuuuggggggg44	chr6:32945309-32945540(+)$1	231	12	40	20.4753
eee[cccwwwwwwwwwwwwwwccceeee	chrX:70753945-70754197(+)$1	252	116	144	22.5872
gggggggwwwwwwwwwwwwwwggggggg	chr15:93445292-93445540(+)$1	248	51	79	22.3942
###ddddwwwwwwwwwwwwwwdddd444	chr1:1326492-1326714(-)$1	222	159	187	23.4562
e!!ddddwwwwwwwwwwwwwwdddd444	chr16:88849462-88849696(-)$1	234	200	228	23.8148
f^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:160397315-160397569(+)$1	254	13	41	23.6610
cc[dddduuuuuuuuuuuudddd]ccc2	chr16:85708679-85708932(+)$1	253	25	53	19.9700
bddddyyyyyyyyyyyyyyyydddd]bb	chr4:71840922-71841155(+)$1	233	111	139	21.2297
$$$dddduuuuuuuuuuuudddd]ccc]	chr6:68598281-68598499(-)$1	218	133	161	19.4848
e[a^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:176791708-176791955(-)$1	247	156	184	24.1973
e!!cccxxxxxxxxxxxxxxxccc22ee	chr18:9954462-9954697(+)$1	235	72	100	21.9240
eeee[cccvvvvvvvvvvvvvccc]eee	chr16:23435874-23436159(-)$1	285	240	268	20.6696
c!!ddddvvvvvvvvvvvvvddddcccc	chr1:192985309-192985551(-)$1	242	142	170	20.9279
ddddcccxxxxxxxxxxxxxxxccc]dd	chr21:39491817-39492100(-)$1	283	97	125	21.5606
ddddcccyyyyyyyyyyyyyyyyccc]d	chr13:114770115-114770373(-)$1	258	218	246	22.6884
c[eeeeevvvvvvvvvvvvveeeee]cc	chr20:60627593-60627884(-)$1	291	7	35	20.8237
b"""cccwwwwwwwwwwwwwwccc333b	chr4:103718357-103718593(-)$1	236	196	224	23.3858
gggggdddduuuuuuuuuuuudddd]gg	chr3:142743328-142743633(+)$1	305	98	126	19.9718
d[eeeeexxxxxxxxxxxxxxxeeeee]	chr17:18113095-18113341(+)$1	246	112	140	21.7343
eeeeccc^^^^^^^^^^^^^^^^^^^^^	chr7:138730383-138730664(-)$1	281	152	180	24.1201
=======vvvvvvvvvvvvv========	chr11:108344644-108344915(-)$1	271	70	98	21.3410
####ddddvvvvvvvvvvvvvdddd444	chr7:148700494-148700708(-)$1	214	8	36	21.3439
eeeee^^^^^^^^^^^^^^^^^^^^^^^	chr1:27860707-27860990(-)$1	283	169	197	24.2674
dddddddxxxxxxxxxxxxxxxdddd]d	chr2:178084826-178085063(+)$1	237	137	165	21.1972
ee[dddd^^^^^^^^^^^^^^^^^^^^^	chr10:28909052-28909269(+)$1	217	138	166	24.0895
&&ccc[awwwwwwwwwwwwwwa]ccc77	chr15:44816858-44817115(+)$1	257	105	133	21.4310
gggddddwwwwwwwwwwwwwwdddd]gg	chr6:8079814-8080064(-)$1	250	153	181	22.6015
iiiiiiiyyyyyyyyyyyyyyyyiiiii	chr17:74730936-74731168(-)$1	232	23	51	22.8560
=======^^^^^^^^^^^^^^^^^^^^^	chr12:46582327-46582576(-)$1	249	30	58	24.4461
eeeeeyyyyyyyyyyyyyyyyeeeee44	chr2:27806703-27806956(+)$1	253	124	152	22.7877
eeee^^^^^^^^^^^^^^^^^^^eeeee	chr13:28844919-28845180(+)$1	261	2	30	22.2280

#otherMatches

#Seq PSSM
UUUUACCCUGCCCCUCUUUUUCGGUUUG	chr22:20114547-20114776(+)$1	229	80	108	22.2538
UCUAACAACAAGCAUAAUAUAAAAUUAG	chr6:109687829-109688088(-)$1	259	9	37	23.1688
UUUUCUCUUAACACCAAUGAUGAACCCU	chr1:90059339-90059607(+)$1	268	139	167	24.1893
CUUUGGUCUUACUUUUUAAUUAAUCAAA	chr14:31171231-31171488(+)$1	257	177	205	20.3188
GUAUAUAUUUUUCUUCGCUGUUACGAAU	chr3:45052798-45053049(+)$1	251	91	119	21.2449
CUUGUGGGAAAGGAAUCAAGGACCAGAG	chr20:37057418-37057661(-)$1	243	182	210	21.7355
GAUUGUUUUAUUGUCGUCAUUGUUAUUU	chr6:134308404-134308690(+)$1	286	63	91	23.8187
ACUGCCCCCACCCUAACAUCAUGGUCUG	chr1:219381208-219381472(+)$1	264	47	75	22.9686
CUGUUUCUACUUUUUAUCUCACAUUUCU	chrX:73047196-73047443(-)$1	247	34	62	23.6901
Cuauaaauauauauuuuuaaaauauuua	chr6:43147608-43147864(+)$1	256	59	87	24.1893
UCCCAUUAACUUGAGUGACCUGUGUGAG	chr16:28848306-28848549(+)$1	243	118	146	21.4611
UAUAAUCGUCAAAAAACUUUAGAUUUAA	chr16:88817796-88818084(-)$1	288	12	40	21.7355
auauugagucuucuaaucaaugacuauu	chr19:29031131-29031397(-)$1	266	46	74	24.4461
UUACUUUGUGGGUUCUUUUAAAAGUAAC	chr10:74767789-74768028(-)$1	239	202	230	19.3990
GCUAAGGACACCAAAACGUAAGUCUCCA	chr17:47117373-47117628(+)$1	255	63	91	19.9873
GAAAGUAAAAAAAAAAAUAAAAUCUUUC	chr8:6616992-6617240(+)$1	248	155	183	22.3392
UAAAGAAUUUGCCUUGUUUUUUUCCUUU	chr11:65194411-65194635(+)$1	224	60	88	21.2511
UGCUUUUAUUUUUAUUUUUCGUGGUUCU	chr12:111179828-111180063(-)$1	235	80	108	23.0401
UCCAGAGCUAUUUCUAAGACUUUCUGUG	chr1:236713982-236714222(-)$1	240	4	32	22.4375
gccugUCUACuucuuuuuuucucuuauc	chr5:145854471-145854737(+)$1	266	63	91	24.5845
AUAGGACAAAAUGUUAAGUCUUUCCUCU	chrX:123042364-123042647(+)$1	283	80	108	22.3340
AAUUGGUUAUAUGUCACUGCUUGCCAUU	chr11:11928962-11929260(+)$1	298	146	174	20.2121
AGUUAGUUGCUCUCCUUUUUUCUUUUUU	chr5:114950703-114951003(-)$1	300	60	88	20.3015
UUCCUGUUCAUAGCAAUAUUAAAUCAGG	chr1:223962746-223963024(+)$1	278	105	133	24.4461
AAGGUAAUCAAUUUGCACCuuuuuuuau	chr1:32636786-32637041(+)$1	255	18	46	24.1893
guuuuuUUCCCCCUUUCUCCUCCCCUCC	chr1:15392553-15392798(+)$1	245	97	125	24.2674
CUACUACUUUAAUCCCUAAAAGAACGCU	chr8:11696102-11696318(+)$1	216	105	133	23.8979
caagcaaauggaaagcaaaaaaaagcag	chr1:55578670-55578915(-)$1	245	126	154	22.2829
CUUUCUUUUUAUUUUAAAUCUGAAGGUU	chr11:130014400-130014639(+)$1	239	82	110	22.7877
CAUACAGUUCUAGAUGUUAUACUGUGCU	chr3:195791023-195791246(-)$1	223	108	136	19.7506
gucuauguuuccugcugcuuuuauggau	chr1:207866375-207866658(+)$1	283	16	44	22.3942
CCUCAUGACUGACAAAAACUCCAUGGGG	chr3:152182700-152182973(+)$1	273	148	176	22.3942
GUUUGUGGGUUUUUUUUUUUUACACGAA	chr11:65268295-65268507(+)$1	212	175	203	22.6207
GUAUAGUGACCCCUGUUUCCAUUAAAUU	chr1:29474180-29474410(-)$1	230	99	127	24.0614
UUAGUCGUCCUUUUUUUUUUCCUUUUGU	chr10:43902938-43903162(-)$1	224	49	77	23.8289
GUGUAGGUAUCUUAUUAUCUCCUCAGCC	chr1:145584791-145585041(+)$1	250	168	196	21.0345
UAAGGUAUUUAAAAUCUAUUUAUGCUUU	chr8:54959788-54960078(-)$1	290	224	252	21.1968
GCAGGGGACAUUGUUUCACACUUCUCUC	chr3:185364604-185364864(-)$1	260	212	240	20.2233
CAGUCUCUCAUUGGCUUCUUUGAGACUG	chr9:95018761-95019011(-)$1	250	13	41	22.3942
CCCAGUGUUCUUCCGUCCCAAAUUCCUC	chr19:52773240-52773502(+)$1	262	174	202	23.3693
UUGUGGCAAUGGCACGAAAGCUACAGGU	chr6:32945309-32945540(+)$1	231	12	40	20.4753
GGGUCUGCCAUCCCCAUUCUUCAGCCCA	chrX:70753945-70754197(+)$1	252	116	144	22.5872
UGUAUUUUAUCCUCACAAUUUAGAUGUA	chr15:93445292-93445540(+)$1	248	51	79	22.3942
AGGUUGAGGGGAAAAGUAAAGUUAAAGU	chr1:1326492-1326714(-)$1	222	159	187	23.4562
CUUCUAUGAAACUUUUAAAGAAUAGUGA	chr16:88849462-88849696(-)$1	234	200	228	23.8148
AUCUUUGUCUUUUUUCauuauuauuauu	chr1:160397315-160397569(+)$1	254	13	41	23.6610
AACACAGUAGCACCUAAAUCUGUUUUCA	chr16:85708679-85708932(+)$1	253	25	53	19.9700
CAUGAUUUAUCUUUUAUAUGUUUAUAGA	chr4:71840922-71841155(+)$1	233	111	139	21.2297
cucaguggccagaaaacagcacuuccaa	chr6:68598281-68598499(-)$1	218	133	161	19.4848
gugucaucauuucuucauucugcauauu	chr2:176791708-176791955(-)$1	247	156	184	24.1973
AUGUUAUUUUAAUAAUCCCUUUAAAUUU	chr18:9954462-9954697(+)$1	235	72	100	21.9240
UUCCAUGAAAAAACAUUGCCAUCAAGGA	chr16:23435874-23436159(-)$1	285	240	268	20.6696
UUAGAGCAACAUCCUAAUUGGCUCAGUG	chr1:192985309-192985551(-)$1	242	142	170	20.9279
ucaagguuaaaucuaccaucuuaccauu	chr21:39491817-39492100(-)$1	283	97	125	21.5606
ugcaagcgcucacguccuccacagcucu	chr13:114770115-114770373(-)$1	258	218	246	22.6884
UGGUACUGUGGGGGUGGGGUGGUGUGAG	chr20:60627593-60627884(-)$1	291	7	35	20.8237
UUCCAGCUUUGGACAAUAACUGCUUUUA	chr4:103718357-103718593(-)$1	236	196	224	23.3858
UUUCUCUUUCAACACACUAUUAAAGCAG	chr3:142743328-142743633(+)$1	305	98	126	19.9718
GCAGCACUUCGCCCUGAUAUGUGUGCUC	chr17:18113095-18113341(+)$1	246	112	140	21.7343
GUUUGUCCAACUCUUuccaacagcccau	chr7:138730383-138730664(-)$1	281	152	180	24.1201
UCUCUUCCACUUCCAAUUAUGAAGAGAA	chr11:108344644-108344915(-)$1	271	70	98	21.3410
uuuaguccagauuuuuacagaggauaca	chr7:148700494-148700708(-)$1	214	8	36	21.3439
UUUGUAUUaaaaagaaaugaaaaaaagc	chr1:27860707-27860990(-)$1	283	169	197	24.2674
CCUUGGUCAAAUUUGAACUGCUGCCAUA	chr2:178084826-178085063(+)$1	237	137	165	21.1972
AUGGCACUUUUCUAUAACCUUUUCAUUC	chr10:28909052-28909269(+)$1	217	138	166	24.0895
AUGGCCGUUUUCCUGCUUUGUCUGCCUG	chr15:44816858-44817115(+)$1	257	105	133	21.4310
AAGUUGAGAUCCAGUUAUAAAUUAACCU	chr6:8079814-8080064(-)$1	250	153	181	22.6015
AAGGUUAUUUUGUAACAUUUGUCUAACU	chr17:74730936-74731168(-)$1	232	23	51	22.8560
UGUGAAAUUUUUUUUUCAAAUUUCAUAC	chr12:46582327-46582576(-)$1	249	30	58	24.4461
ggaacuucuugugacgaaaauguucugu	chr2:27806703-27806956(+)$1	253	124	152	22.7877
CUGCAUUGCGUACCAUUCAUACAGCAGG	chr13:28844919-28845180(+)$1	261	2	30	22.2280

#DB
(...(((...............)))..)	chr22:20114547-20114776(+)$1	1	80	108	22.2538
((((((.....................)	chr6:109687829-109688088(-)$1	1	9	37	23.1688
(((((((.....................	chr1:90059339-90059607(+)$1	1	139	167	24.1893
(((((((...............))))))	chr14:31171231-31171488(+)$1	1	177	205	20.3188
(((..................)))))))	chr3:45052798-45053049(+)$1	1	91	119	21.2449
(((((((...............))....	chr20:37057418-37057661(-)$1	1	182	210	21.7355
((.((.......................	chr6:134308404-134308690(+)$1	1	63	91	23.8187
((.(((................)))..)	chr1:219381208-219381472(+)$1	1	47	75	22.9686
(...........................	chrX:73047196-73047443(-)$1	1	34	62	23.6901
(((((((.....................	chr6:43147608-43147864(+)$1	1	59	87	24.1893
((.(((...............))).)))	chr16:28848306-28848549(+)$1	1	118	146	21.4611
(..((((..............))))...	chr16:88817796-88818084(-)$1	1	12	40	21.7355
(((((((.....................	chr19:29031131-29031397(-)$1	1	46	74	24.4461
(((((((.............))))))))	chr10:74767789-74768028(-)$1	1	202	230	19.3990
(((..((((............))))..)	chr17:47117373-47117628(+)$1	1	63	91	19.9873
(((((..................)))))	chr8:6616992-6617240(+)$1	1	155	183	22.3392
(((((((..............)))..))	chr11:65194411-65194635(+)$1	1	60	88	21.2511
.(((..................)))...	chr12:111179828-111180063(-)$1	1	80	108	23.0401
(.(((((..............))))).)	chr1:236713982-236714222(-)$1	1	4	32	22.4375
(..(((......................	chr5:145854471-145854737(+)$1	1	63	91	24.5845
(.((((................)))).)	chrX:123042364-123042647(+)$1	1	80	108	22.3340
...((((...............))))..	chr11:11928962-11929260(+)$1	1	146	174	20.2121
((..((...............)).))))	chr5:114950703-114951003(-)$1	1	60	88	20.3015
(((((((.....................	chr1:223962746-223963024(+)$1	1	105	133	24.4461
(((((((.....................	chr1:32636786-32637041(+)$1	1	18	46	24.1893
(((((.......................	chr1:15392553-15392798(+)$1	1	97	125	24.2674
(((((((.....................	chr8:11696102-11696318(+)$1	1	105	133	23.8979
(..((...................))..	chr1:55578670-55578915(-)$1	1	126	154	22.2829
(((((................)))))..	chr11:130014400-130014639(+)$1	1	82	110	22.7877
(..(((((............))))))).	chr3:195791023-195791246(-)$1	1	108	136	19.7506
(((((((..............)))))))	chr1:207866375-207866658(+)$1	1	16	44	22.3942
(((((((..............)))))))	chr3:152182700-152182973(+)$1	1	148	176	22.3942
(((((((...............))))))	chr11:65268295-65268507(+)$1	1	175	203	22.6207
(.(((((.....................	chr1:29474180-29474410(-)$1	1	99	127	24.0614
(((((((.....................	chr10:43902938-43903162(-)$1	1	49	77	23.8289
((..(((.............)))..)))	chr1:145584791-145585041(+)$1	1	168	196	21.0345
((((((((.............)))))))	chr8:54959788-54960078(-)$1	1	224	252	21.1968
(.(((((.............))))))))	chr3:185364604-185364864(-)$1	1	212	240	20.2233
(((((((..............)))))))	chr9:95018761-95019011(-)$1	1	13	41	22.3942
(((((((.....................	chr19:52773240-52773502(+)$1	1	174	202	23.3693
(((((((............)))))))..	chr6:32945309-32945540(+)$1	1	12	40	20.4753
(((.(((..............)))))))	chrX:70753945-70754197(+)$1	1	116	144	22.5872
(((((((..............)))))))	chr15:93445292-93445540(+)$1	1	51	79	22.3942
...((((..............))))...	chr1:1326492-1326714(-)$1	1	159	187	23.4562
(..((((..............))))...	chr16:88849462-88849696(-)$1	1	200	228	23.8148
(...........................	chr1:160397315-160397569(+)$1	1	13	41	23.6610
((.((((............)))).))).	chr16:85708679-85708932(+)$1	1	25	53	19.9700
(((((................)))).))	chr4:71840922-71841155(+)$1	1	111	139	21.2297
...((((............)))).))).	chr6:68598281-68598499(-)$1	1	133	161	19.4848
(.(.........................	chr2:176791708-176791955(-)$1	1	156	184	24.1973
(..(((...............)))..))	chr18:9954462-9954697(+)$1	1	72	100	21.9240
((((.(((.............))).)))	chr16:23435874-23436159(-)$1	1	240	268	20.6696
(..((((.............)))))))(	chr1:192985309-192985551(-)$1	1	142	170	20.9279
(((((((...............))).))	chr21:39491817-39492100(-)$1	1	97	125	21.5606
(((((((................))).)	chr13:114770115-114770373(-)$1	1	218	246	22.6884
(.(((((.............))))).))	chr20:60627593-60627884(-)$1	1	7	35	20.8237
(...(((..............)))...)	chr4:103718357-103718593(-)$1	1	196	224	23.3858
(((((((((............)))).))	chr3:142743328-142743633(+)$1	1	98	126	19.9718
(.(((((...............))))).	chr17:18113095-18113341(+)$1	1	112	140	21.7343
))))(((.....................	chr7:138730383-138730664(-)$1	1	152	180	24.1201
(((((((.............))))))))	chr11:108344644-108344915(-)$1	1	70	98	21.3410
....((((.............))))...	chr7:148700494-148700708(-)$1	1	8	36	21.3439
(((((.......................	chr1:27860707-27860990(-)$1	1	169	197	24.2674
(((((((...............)))).)	chr2:178084826-178085063(+)$1	1	137	165	21.1972
((.((((.....................	chr10:28909052-28909269(+)$1	1	138	166	24.0895
..(((.(..............).)))..	chr15:44816858-44817115(+)$1	1	105	133	21.4310
(((((((..............)))).))	chr6:8079814-8080064(-)$1	1	153	181	22.6015
(((((((................)))))	chr17:74730936-74731168(-)$1	1	23	51	22.8560
(((((((.....................	chr12:46582327-46582576(-)$1	1	30	58	24.4461
(((((................)))))..	chr2:27806703-27806956(+)$1	1	124	152	22.7877
((((...................)))))	chr13:28844919-28845180(+)$1	1	2	30	22.2280

#PSSM
g : 0.21	e : 0.19	d : 0.12	f : 0.11	= : 0.08	c : 0.07	b : 0.05	# : 0.04	h : 0.02	i : 0.02	) : 0.01	$ : 0.01	& : 0.01	
g : 0.19	e : 0.15	f : 0.09	! : 0.09	[ : 0.09	= : 0.08	d : 0.07	" : 0.02	^ : 0.02	c : 0.02	i : 0.02	# : 0.02	h : 0.01	) : 0.01	$ : 0.01	& : 0.01	
e : 0.21	g : 0.19	! : 0.12	= : 0.08	[ : 0.07	d : 0.07	f : 0.05	" : 0.02	^ : 0.02	c : 0.02	# : 0.02	h : 0.01	) : 0.01	$ : 0.01	a : 0.01	i : 0.01	
d : 0.21	e : 0.19	g : 0.15	c : 0.08	= : 0.08	f : 0.05	^ : 0.05	! : 0.04	" : 0.02	b : 0.02	h : 0.01	[ : 0.01	# : 0.01	i : 0.01	
d : 0.19	c : 0.18	g : 0.15	e : 0.15	^ : 0.08	= : 0.08	f : 0.05	b : 0.04	! : 0.01	[ : 0.01	i : 0.01	
d : 0.21	c : 0.18	^ : 0.15	g : 0.12	= : 0.08	e : 0.08	f : 0.04	b : 0.04	y : 0.04	[ : 0.01	i : 0.01	
d : 0.19	^ : 0.18	c : 0.12	g : 0.12	= : 0.08	e : 0.08	y : 0.07	x : 0.04	f : 0.02	b : 0.02	a : 0.01	i : 0.01	
^ : 0.35	w : 0.18	x : 0.15	y : 0.09	v : 0.08	d : 0.04	u : 0.04	e : 0.01	= : 0.01	c : 0.01	
^ : 0.35	w : 0.18	x : 0.15	v : 0.12	y : 0.09	u : 0.05	d : 0.02	
^ : 0.35	w : 0.18	x : 0.15	v : 0.12	y : 0.09	u : 0.08	
^ : 0.35	w : 0.18	x : 0.15	v : 0.12	y : 0.09	u : 0.08	
^ : 0.35	w : 0.18	x : 0.15	v : 0.12	y : 0.09	u : 0.08	
^ : 0.35	w : 0.18	x : 0.15	v : 0.12	y : 0.09	u : 0.08	
^ : 0.35	w : 0.18	x : 0.15	v : 0.12	y : 0.09	u : 0.08	
^ : 0.35	w : 0.18	x : 0.15	v : 0.12	y : 0.09	u : 0.08	
^ : 0.35	w : 0.18	x : 0.15	v : 0.12	y : 0.09	u : 0.08	
^ : 0.35	w : 0.18	x : 0.15	v : 0.12	y : 0.09	u : 0.08	
^ : 0.35	w : 0.18	x : 0.15	v : 0.12	y : 0.09	u : 0.08	
^ : 0.35	w : 0.18	x : 0.15	v : 0.12	y : 0.09	u : 0.08	
^ : 0.35	w : 0.18	x : 0.15	v : 0.12	y : 0.09	u : 0.04	d : 0.02	g : 0.01	
^ : 0.35	w : 0.18	x : 0.15	y : 0.09	e : 0.04	v : 0.04	d : 0.04	g : 0.02	u : 0.02	c : 0.01	= : 0.01	
^ : 0.33	d : 0.15	x : 0.11	g : 0.09	c : 0.09	e : 0.08	y : 0.05	= : 0.02	b : 0.01	a : 0.01	
^ : 0.32	d : 0.19	c : 0.15	g : 0.09	e : 0.09	= : 0.04	b : 0.02	y : 0.02	f : 0.01	] : 0.01	
^ : 0.29	c : 0.16	d : 0.16	e : 0.12	g : 0.09	] : 0.04	= : 0.04	f : 0.01	b : 0.01	2 : 0.01	i : 0.01	
^ : 0.28	d : 0.15	e : 0.14	c : 0.12	g : 0.09	2 : 0.04	= : 0.04	f : 0.02	] : 0.02	4 : 0.01	b : 0.01	3 : 0.01	i : 0.01	
^ : 0.28	e : 0.11	g : 0.09	2 : 0.07	4 : 0.07	c : 0.07	] : 0.07	d : 0.05	f : 0.04	= : 0.04	b : 0.02	i : 0.02	5 : 0.01	3 : 0.01	
^ : 0.28	g : 0.11	4 : 0.11	e : 0.08	2 : 0.07	] : 0.05	c : 0.05	f : 0.04	= : 0.04	b : 0.02	i : 0.02	d : 0.02	5 : 0.01	h : 0.01	3 : 0.01	7 : 0.01	
^ : 0.26	g : 0.11	4 : 0.11	d : 0.08	f : 0.07	e : 0.07	2 : 0.05	b : 0.04	= : 0.04	i : 0.02	] : 0.02	c : 0.02	5 : 0.01	D : 0.01	h : 0.01	7 : 0.01	

#score	1583.9161555625114
#seq	71
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_CDS_m2_run2.txt

#BEAR
==========oooooo==========b	chr7:24690096-24690432(+)$1	336	259	286	14.3941
bb!!ffffffooooooffffff22bbf	chr16:74971948-74972164(-)$1	216	68	95	11.4142
fffffeeeeeooooooeeeee22ffff	chr2:45780668-45780905(-)$1	237	173	200	11.4607
gggggeeeeeooooooeeeee]ggggg	chr17:79589094-79589401(-)$1	307	79	106	12.9345
ff"""eeeeeooooooeeeee]fffff	chr10:64953967-64954218(-)$1	251	216	243	12.3382
ee"""eeeeeooooooeeeee4444ee	chr9:107607657-107607881(-)$1	224	14	41	13.1046
ee####a!!aooooooa22a333eeee	chr19:10781665-10781934(+)$1	269	187	214	13.3313
$$ccc[ddddoooooodddd333ccc]	chr8:124790860-124791103(+)$1	243	80	107	13.0845
g[ccc!!cccooooooccc00000000	chr13:21199787-21200008(+)$1	221	135	162	10.9953
!!eeeee!!aooooooa22eeeee22c	chr1:39749992-39750197(+)$1	205	118	145	11.8970
###affffffooooooffffff]a444	chr2:187370431-187370665(+)$1	234	42	69	12.6446
ggggg[ddddoooooodddd22ggggg	chr9:27556677-27556895(-)$1	218	2	29	12.9646
ff####ddddoooooodddd4444fff	chr12:39725966-39726260(-)$1	294	256	283	13.0080
ggggg[acccrrrrrrrrrccc]a]gg	chr1:115321655-115322006(-)$1	351	268	295	9.3728
ffffffddddoooooodddd4444fff	chr4:83279711-83279930(-)$1	219	167	194	12.0954
gggggbbcccooooooccc333bb]gg	chr20:16712736-16713021(+)$1	285	88	115	13.3563
eeee[eeeeeooooooeeeee]eeeee	chr15:93496486-93496695(+)$1	209	82	109	11.8885
eeegggggggooooooggggggg333e	chr3:17425307-17425559(-)$1	252	108	135	13.3951
"""gggggggrrrrrrrrrgggggggf	chr2:70442433-70442688(-)$1	255	19	46	9.1323
==========oooooo==========]	chr2:170761671-170761890(+)$1	219	113	140	14.7049
ggggggg[cccnnnnnccc]ggggggg	chr12:77203474-77203743(+)$1	269	65	92	9.5873
dddd[bb!!aooooooa22bbdddd22	chr13:27663967-27664205(-)$1	238	156	183	10.9089
d[bb!!ddddoooooodddd]bb]ddd	chr9:95032081-95032327(-)$1	246	43	70	11.9897
============mmmm===========	chr16:14020479-14020725(+)$1	246	149	176	9.8215
dddd[bbcccooooooccc]bb]dddd	chr1:205689533-205689754(-)$1	221	37	64	12.2055
f[bb"""cccoooooocccbb]fffff	chr2:167167952-167168190(-)$1	238	126	153	12.5356
iiiiiiiiirrrrrrrrriiiiiiiii	chr6:129932599-129932839(-)$1	240	104	131	9.3178
:a[gggggggooooooggggggg]aee	chr8:48888245-48888486(+)$1	241	6	33	12.2393
"""gggggggooooooggggggg333c	chr1:75681425-75681642(-)$1	217	17	44	14.1412
dd[bb[bb[aooooooa]bbbb]dddd	chr6:64394558-64394809(+)$1	251	209	236	10.9901
ddd"""ddddoooooodddd333dddd	chr3:42679729-42679982(+)$1	253	194	221	13.1022
hhhh!!ddddoooooodddd]hhhhhh	chr15:89806557-89806791(+)$1	234	34	61	11.1504
ddd[a[ddddooooooddddadddddd	chr13:46619006-46619252(-)$1	246	50	77	11.9636
[dddd!!cccooooooccc22ddddcc	chr17:62500734-62500977(-)$1	243	175	202	12.8232
[cccgggggggnnnnnggggggg22cc	chr17:65909013-65909323(+)$1	310	129	156	8.8053
iiiiibb[cccnnnnnccc]bb333ii	chr18:7906404-7906681(+)$1	277	197	224	9.3958
==========oooooo===========	chr11:9459391-9459622(+)$1	231	188	215	14.7369
$$$$a!!cccooooooccc22a4444c	chr17:41338166-41338376(+)$1	210	61	88	13.4762
b!!a[eeeeeooooooeeeee]a22bb	chr2:27680984-27681190(-)$1	206	66	93	12.3940
ccc!!ccc[aooooooaccccccaggg	chr19:12841724-12841982(-)$1	258	172	199	13.4535
===:ffffffooooooffffff:gggg	chrX:54838492-54838731(+)$1	239	104	131	10.7087
bb!!ffffffooooooffffff22bb]	chr2:120885270-120885526(+)$1	256	39	66	11.5003
[ccc[eeeeeooooooeeeeeccc]bb	chr17:55478655-55478905(+)$1	250	162	189	12.3241
d[dddd!!bboooooobb333dddd33	chr14:71511848-71512086(+)$1	238	61	88	12.2566
d!!dddd[bboooooobbdddd]dddd	chr6:76388240-76388465(+)$1	225	162	189	11.5935
ii!!ffffffooooooffffff333ii	chr2:152326216-152326461(+)$1	245	200	227	13.3688
ddd]ccccccooooooccc:ggggggg	chr2:27876334-27876633(-)$1	299	67	94	11.9696
g[bb"""cccooooooccc333bb]gg	chr2:27657237-27657526(+)$1	289	101	128	13.7959
""dddd!!bboooooobb22dddd444	chr12:26752872-26753110(-)$1	238	76	103	11.5526
iiiii!!cccnnnnnccc22iiiiiii	chr10:99229295-99229523(-)$1	228	177	204	9.6943
ddddd"""bboooooobb333dddd]d	chr14:31077124-31077376(+)$1	252	55	82	11.9867
ddd[ccc[bboooooobb]cccdddd]	chr14:35078748-35079030(-)$1	282	171	198	11.7752
[bbccc[cccoooooocccccc]bb]d	chr1:35656909-35657156(-)$1	247	107	134	12.5775

#otherMatches

#Seq PSSM
AUUAAAAAUACUUUCAUGUUUUUAAUC	chr7:24690096-24690432(+)$1	336	259	286	14.3941
AGACAGCGAGCACAUUCUUGCUACCUC	chr16:74971948-74972164(-)$1	216	68	95	11.4142
UACUGAUUAUUGUUAUAUGAUACUAGU	chr2:45780668-45780905(-)$1	237	173	200	11.4607
CUUUGGGCCUUGUUUUAGGUUGCAAAG	chr17:79589094-79589401(-)$1	307	79	106	12.9345
CCAGAUUAAGGAAACACUUAAAGGAGU	chr10:64953967-64954218(-)$1	251	216	243	12.3382
UUUCUUUCUCAUUACAGAGAACACUAA	chr9:107607657-107607881(-)$1	224	14	41	13.1046
AGAGGACGACAGUAAAGAAGGGGCUGG	chr19:10781665-10781934(+)$1	269	187	214	13.3313
AAGCCAGUGGAAAUUGCCAUAGAGGCG	chr8:124790860-124791103(+)$1	243	80	107	13.0845
GAGCUAGCCAAUGAUCUGGAAAUAAAC	chr13:21199787-21200008(+)$1	221	135	162	10.9953
UUAUCCUUUGCUGAGACUUGGGGUUUG	chr1:39749992-39750197(+)$1	205	118	145	11.8970
GUCGUGAAGUGUUUGAAUUUCGUCCUG	chr2:187370431-187370665(+)$1	234	42	69	12.6446
gauggauuugcuaaaucagagACCAUU	chr9:27556677-27556895(-)$1	218	2	29	12.9646
UUAAAAAAGCGUAAUGGUUUAAUGAAA	chr12:39725966-39726260(-)$1	294	256	283	13.0080
AAUGAACCAAAUUGAAAUCUUGAGAUU	chr1:115321655-115322006(-)$1	351	268	295	9.3728
GUGAUUGUCCCAUUAUGGACUCAGAGU	chr4:83279711-83279930(-)$1	219	167	194	12.0954
AUAUGCCCUGUUUUCUCAGUUUGGUCA	chr20:16712736-16713021(+)$1	285	88	115	13.3563
UAUUUUUUCUUUCUGCAGAAAUAAUAG	chr15:93496486-93496695(+)$1	209	82	109	11.8885
UUCUUUUCUGUUAUGCCAGAGAAAACG	chr3:17425307-17425559(-)$1	252	108	135	13.3951
UAAAAGAAUUUGUAUUGGUGAUUCUUA	chr2:70442433-70442688(-)$1	255	19	46	9.1323
UUUGUAUCUUUCUUUCAAGGUAUGAAU	chr2:170761671-170761890(+)$1	219	113	140	14.7049
AUCCUUCAUUAAUUGAUGGAGAAGGAU	chr12:77203474-77203743(+)$1	269	65	92	9.5873
GUGUCGCAGCAAACAGGAAGCACACAA	chr13:27663967-27664205(-)$1	238	156	183	10.9089
UGUGUUUCUGCUUCCCCAGAUCAGACA	chr9:95032081-95032327(-)$1	246	43	70	11.9897
UGACAAAUAAUGAUGACAUUAUUUGUC	chr16:14020479-14020725(+)$1	246	149	176	9.8215
AGCAGCUUCUAAACAGAGAGAGAUGCU	chr1:205689533-205689754(-)$1	221	37	64	12.2055
CCGGCAUGGUGUCAGAGCCCCUGGAGG	chr2:167167952-167168190(-)$1	238	126	153	12.5356
GAGAGGUUUGGAAACAGAAGGCCUCUU	chr6:129932599-129932839(-)$1	240	104	131	9.3178
UCAUUGAUUUCUUUUUAAAUCAGGGAU	chr8:48888245-48888486(+)$1	241	6	33	12.2393
UUUUAAAUGUUGUAUUAUAUUUAUUUU	chr1:75681425-75681642(-)$1	217	17	44	14.1412
GUAUUGCUGAUAAAACUGAGAACACCC	chr6:64394558-64394809(+)$1	251	209	236	10.9901
GAAGAAGGUGAGGCCACAUCCGAUUCU	chr3:42679729-42679982(+)$1	253	194	221	13.1022
ACAAAGUUAUAUCUAAAUAAGUUGUAA	chr15:89806557-89806791(+)$1	234	34	61	11.1504
UAGACACAGUGCCGUAACUGGCUGAAG	chr13:46619006-46619252(-)$1	246	50	77	11.9636
GCACAGCAGUGAGUAAAUUCAUGUGGC	chr17:62500734-62500977(-)$1	243	175	202	12.8232
AGCAGCAAGAAGAGCAUUUUUGUUUUG	chr17:65909013-65909323(+)$1	310	129	156	8.8053
AAUAUUCGGGUACAUCAUUGGGGGCAU	chr18:7906404-7906681(+)$1	277	197	224	9.3958
GAAAAGAAAACAGuuuuuuuuuuuuuu	chr11:9459391-9459622(+)$1	231	188	215	14.7369
UCACGUCGCAUGUUUUUGUUUCAUAAU	chr17:41338166-41338376(+)$1	210	61	88	13.4762
GAUCUGAGGCUGCCUUGCCUCUGUGCC	chr2:27680984-27681190(-)$1	206	66	93	12.3940
GGUGACGAUGAUAAAACUCGGCCCCUG	chr19:12841724-12841982(-)$1	258	172	199	13.4535
GGAUUCAAUUGAAGGAAAUUGAUAAGA	chrX:54838492-54838731(+)$1	239	104	131	10.7087
GCAACGAUUGGUGAUGUAAUUGGGGCA	chr2:120885270-120885526(+)$1	256	39	66	11.5003
GAGCAGUUUGGCAAGGUAAGCGCUGGA	chr17:55478655-55478905(+)$1	250	162	189	12.3241
GUGCUGCCUCAAGUUAGAAAACAGCUA	chr14:71511848-71512086(+)$1	238	61	88	12.2566
AGAAAAGUGAGAGAAUUCCUUUAUAUU	chr6:76388240-76388465(+)$1	225	162	189	11.5935
AUGAUGUAGCAGUACAGUUACAGAAGU	chr2:152326216-152326461(+)$1	245	200	227	13.3688
UGGAGCCUCAAGAAAGUGAAGAAGGCA	chr2:27876334-27876633(-)$1	299	67	94	11.9696
UCAUUUUUAUCACAGAAUACAUGUCAU	chr2:27657237-27657526(+)$1	289	101	128	13.7959
AAAGAUGAAUGAAGUAAUGAAUCUAGC	chr12:26752872-26753110(-)$1	238	76	103	11.5526
ggaaauaauacauccuguccuuuuccc	chr10:99229295-99229523(-)$1	228	177	204	9.6943
AAAACCUUGUUUAACUGCCUUGUUUAU	chr14:31077124-31077376(+)$1	252	55	82	11.9867
CACUGUUCACACAAAGGUAAAUGUGAU	chr14:35078748-35079030(-)$1	282	171	198	11.7752
CUACCUGCUGAUAUCACGGAGGAUGAA	chr1:35656909-35657156(-)$1	247	107	134	12.5775

#DB
((((((((((......))))))))))(	chr7:24690096-24690432(+)$1	1	259	286	14.3941
((..((((((......))))))..)))	chr16:74971948-74972164(-)$1	1	68	95	11.4142
((((((((((......)))))..))))	chr2:45780668-45780905(-)$1	1	173	200	11.4607
((((((((((......))))).)))))	chr17:79589094-79589401(-)$1	1	79	106	12.9345
((...(((((......))))).)))))	chr10:64953967-64954218(-)$1	1	216	243	12.3382
((...(((((......)))))....))	chr9:107607657-107607881(-)$1	1	14	41	13.1046
((....(..(......)..)...))))	chr19:10781665-10781934(+)$1	1	187	214	13.3313
..(((.((((......))))...))).	chr8:124790860-124791103(+)$1	1	80	107	13.0845
(.(((..(((......)))........	chr13:21199787-21200008(+)$1	1	135	162	10.9953
..(((((..(......)..)))))..)	chr1:39749992-39750197(+)$1	1	118	145	11.8970
...(((((((......)))))).)...	chr2:187370431-187370665(+)$1	1	42	69	12.6446
(((((.((((......))))..)))))	chr9:27556677-27556895(-)$1	1	2	29	12.9646
((....((((......))))....)))	chr12:39725966-39726260(-)$1	1	256	283	13.0080
(((((.((((.........))).).))	chr1:115321655-115322006(-)$1	1	268	295	9.3728
((((((((((......))))....)))	chr4:83279711-83279930(-)$1	1	167	194	12.0954
((((((((((......)))...)).))	chr20:16712736-16713021(+)$1	1	88	115	13.3563
((((.(((((......))))).)))))	chr15:93496486-93496695(+)$1	1	82	109	11.8885
((((((((((......)))))))...)	chr3:17425307-17425559(-)$1	1	108	135	13.3951
...(((((((.........))))))))	chr2:70442433-70442688(-)$1	1	19	46	9.1323
((((((((((......)))))))))).	chr2:170761671-170761890(+)$1	1	113	140	14.7049
(((((((.(((.....))).)))))))	chr12:77203474-77203743(+)$1	1	65	92	9.5873
((((.((..(......)..))))))..	chr13:27663967-27664205(-)$1	1	156	183	10.9089
(.((..((((......)))).)).)))	chr9:95032081-95032327(-)$1	1	43	70	11.9897
((((((((((((....)))))))))))	chr16:14020479-14020725(+)$1	1	149	176	9.8215
((((.(((((......))).)).))))	chr1:205689533-205689754(-)$1	1	37	64	12.2055
(.((...(((......))))).)))))	chr2:167167952-167168190(-)$1	1	126	153	12.5356
(((((((((.........)))))))))	chr6:129932599-129932839(-)$1	1	104	131	9.3178
.(.(((((((......))))))).)((	chr8:48888245-48888486(+)$1	1	6	33	12.2393
...(((((((......)))))))...)	chr1:75681425-75681642(-)$1	1	17	44	14.1412
((.((.((.(......).)))).))))	chr6:64394558-64394809(+)$1	1	209	236	10.9901
(((...((((......))))...))))	chr3:42679729-42679982(+)$1	1	194	221	13.1022
((((..((((......)))).))))))	chr15:89806557-89806791(+)$1	1	34	61	11.1504
(((.(.((((......)))))))))))	chr13:46619006-46619252(-)$1	1	50	77	11.9636
.((((..(((......)))..))))))	chr17:62500734-62500977(-)$1	1	175	202	12.8232
.((((((((((.....)))))))..))	chr17:65909013-65909323(+)$1	1	129	156	8.8053
(((((((.(((.....))).))...))	chr18:7906404-7906681(+)$1	1	197	224	9.3958
((((((((((......)))))))))))	chr11:9459391-9459622(+)$1	1	188	215	14.7369
....(..(((......)))..)....)	chr17:41338166-41338376(+)$1	1	61	88	13.4762
(..(.(((((......))))).)..))	chr2:27680984-27681190(-)$1	1	66	93	12.3940
(((..(((.(......)))))))))))	chr19:12841724-12841982(-)$1	1	172	199	13.4535
))).((((((......)))))).((((	chrX:54838492-54838731(+)$1	1	104	131	10.7087
((..((((((......))))))..)).	chr2:120885270-120885526(+)$1	1	39	66	11.5003
.(((.(((((......)))))))).))	chr17:55478655-55478905(+)$1	1	162	189	12.3241
(.((((..((......))...))))..	chr14:71511848-71512086(+)$1	1	61	88	12.2566
(..((((.((......)))))).))))	chr6:76388240-76388465(+)$1	1	162	189	11.5935
((..((((((......))))))...))	chr2:152326216-152326461(+)$1	1	200	227	13.3688
))).)))(((......))).(((((((	chr2:27876334-27876633(-)$1	1	67	94	11.9696
(.((...(((......)))...)).))	chr2:27657237-27657526(+)$1	1	101	128	13.7959
..((((..((......))..))))...	chr12:26752872-26753110(-)$1	1	76	103	11.5526
(((((..(((.....)))..)))))))	chr10:99229295-99229523(-)$1	1	177	204	9.6943
(((((...((......))...)))).)	chr14:31077124-31077376(+)$1	1	55	82	11.9867
(((.(((.((......)).))))))).	chr14:35078748-35079030(-)$1	1	171	198	11.7752
.(((((.(((......)))))).)).)	chr1:35656909-35657156(-)$1	1	107	134	12.5775

#PSSM
d : 0.20	g : 0.13	= : 0.09	f : 0.09	e : 0.07	i : 0.07	[ : 0.07	b : 0.05	" : 0.05	$ : 0.03	! : 0.01	# : 0.01	: : 0.01	h : 0.01	c : 0.01	
d : 0.16	= : 0.09	g : 0.09	[ : 0.09	f : 0.07	e : 0.07	i : 0.07	b : 0.05	! : 0.05	" : 0.05	c : 0.05	$ : 0.03	# : 0.01	a : 0.01	h : 0.01	
d : 0.18	= : 0.09	! : 0.09	g : 0.09	c : 0.09	" : 0.07	b : 0.07	# : 0.05	e : 0.05	i : 0.05	f : 0.03	[ : 0.03	h : 0.01	$ : 0.01	
g : 0.16	d : 0.13	c : 0.09	= : 0.07	! : 0.07	b : 0.07	" : 0.05	i : 0.05	f : 0.03	# : 0.03	e : 0.03	a : 0.03	[ : 0.03	h : 0.01	$ : 0.01	: : 0.01	] : 0.01	
g : 0.18	f : 0.13	" : 0.09	c : 0.09	[ : 0.09	d : 0.09	= : 0.07	! : 0.05	i : 0.05	# : 0.03	a : 0.03	e : 0.01	b : 0.01	
e : 0.15	f : 0.11	! : 0.11	g : 0.11	[ : 0.09	= : 0.07	b : 0.07	" : 0.07	c : 0.07	d : 0.05	# : 0.03	i : 0.01	
d : 0.16	e : 0.15	! : 0.11	g : 0.11	f : 0.09	b : 0.09	= : 0.07	" : 0.05	c : 0.05	a : 0.03	i : 0.01	[ : 0.01	
c : 0.22	d : 0.15	e : 0.13	f : 0.09	! : 0.09	g : 0.09	= : 0.07	[ : 0.07	i : 0.01	b : 0.01	" : 0.01	
c : 0.24	d : 0.15	e : 0.13	f : 0.09	g : 0.09	b : 0.09	= : 0.07	! : 0.05	[ : 0.03	i : 0.01	
c : 0.24	d : 0.15	e : 0.13	f : 0.09	a : 0.09	g : 0.09	b : 0.09	= : 0.07	r : 0.01	
o : 0.84	r : 0.05	c : 0.03	= : 0.01	g : 0.01	n : 0.01	
o : 0.84	n : 0.07	r : 0.05	= : 0.01	
o : 0.84	n : 0.07	r : 0.05	m : 0.01	
o : 0.84	n : 0.07	r : 0.05	m : 0.01	
o : 0.84	n : 0.07	r : 0.05	m : 0.01	
o : 0.84	r : 0.05	n : 0.05	m : 0.01	c : 0.01	
c : 0.22	d : 0.15	e : 0.13	f : 0.09	a : 0.09	b : 0.09	= : 0.07	g : 0.07	r : 0.05	
c : 0.24	d : 0.15	e : 0.13	f : 0.09	b : 0.09	= : 0.07	g : 0.07	2 : 0.05	r : 0.05	] : 0.01	
c : 0.22	d : 0.16	e : 0.13	f : 0.09	2 : 0.09	= : 0.07	g : 0.07	r : 0.03	3 : 0.03	i : 0.01	b : 0.01	] : 0.01	
d : 0.16	e : 0.15	f : 0.09	g : 0.09	= : 0.07	c : 0.07	3 : 0.07	2 : 0.07	] : 0.05	b : 0.05	a : 0.01	0 : 0.01	i : 0.01	: : 0.01	
e : 0.15	3 : 0.13	g : 0.13	f : 0.09	b : 0.09	= : 0.07	c : 0.07	2 : 0.05	4 : 0.03	] : 0.03	i : 0.03	d : 0.03	0 : 0.01	a : 0.01	
g : 0.13	d : 0.13	f : 0.09	] : 0.09	3 : 0.09	c : 0.09	= : 0.07	b : 0.07	4 : 0.05	2 : 0.03	i : 0.03	0 : 0.01	e : 0.01	h : 0.01	a : 0.01	
g : 0.16	d : 0.13	] : 0.11	3 : 0.09	= : 0.07	4 : 0.07	2 : 0.05	b : 0.05	f : 0.03	e : 0.03	i : 0.03	c : 0.03	0 : 0.01	h : 0.01	a : 0.01	: : 0.01	
d : 0.20	g : 0.11	= : 0.07	2 : 0.07	4 : 0.07	3 : 0.07	f : 0.05	e : 0.05	a : 0.05	b : 0.05	c : 0.03	] : 0.03	i : 0.03	0 : 0.01	h : 0.01	
d : 0.20	g : 0.13	f : 0.09	= : 0.07	4 : 0.07	] : 0.07	3 : 0.07	b : 0.05	2 : 0.05	e : 0.03	i : 0.03	c : 0.01	0 : 0.01	a : 0.01	h : 0.01	
g : 0.18	d : 0.13	f : 0.09	= : 0.07	b : 0.07	e : 0.07	i : 0.07	c : 0.05	4 : 0.05	3 : 0.05	2 : 0.03	] : 0.03	0 : 0.01	h : 0.01	
g : 0.16	d : 0.15	f : 0.13	e : 0.09	c : 0.09	] : 0.07	i : 0.07	b : 0.05	4 : 0.03	= : 0.03	0 : 0.01	2 : 0.01	h : 0.01	3 : 0.01	

#score	637.661360773523
#seq	53
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_CDS_m3_run1.txt

#BEAR
IIIIIIIII}DDDD	chr6:43596675-43596990(-)$1	315	255	269	12.0384
IIIIIIIII:::::	chr20:3765580-3765910(-)$1	330	306	320	9.8925
IIIIIIIII}CCC}	chr9:126692066-126692363(-)$1	297	264	278	12.6352
IIIIIIIIIEEEEE	chr1:27320166-27320408(+)$1	242	99	113	12.0255
JJJJJJJJJYYDDD	chr19:2270384-2270662(+)$1	278	251	265	12.4870
IIIIIIIII~~~~C	chr19:55752325-55752617(-)$1	292	238	252	12.7783
JJJJJJJJJ}BB::	chr22:37415720-37416003(+)$1	283	204	218	11.9629
JJJJJJJJJ}DDDD	chr1:156351191-156351519(+)$1	328	240	254	12.1320
JJJJJJJJJEEEEE	chr10:103454217-103454465(-)$1	248	78	92	12.1192
:HHHHHHHHYYFFF	chr5:86564396-86564685(+)$1	289	270	284	8.3787
JJJJJJJJ{BB{BB	chr2:208576444-208576724(+)$1	280	48	62	11.2842
JJJJJJJJJJCCC|	chr12:2113426-2113699(-)$1	273	243	257	11.3438
}HHHHHHHHYYDDD	chr19:7679895-7680180(+)$1	285	96	110	9.9316
HHHHHHHH{BB{CC	chr4:39699790-39700053(+)$1	263	85	99	9.1376
IIIIIIII{EEEEE	chrX:20284609-20284890(-)$1	281	130	144	11.7618
IIIIIIIII?????	chr5:180651114-180651377(+)$1	263	240	254	10.7332
JJJJJJJJJ}FFFF	chr16:90086229-90086512(+)$1	283	265	279	11.5846
JJJJJJJJ{ACCCE	chr11:61197135-61197429(-)$1	294	2	16	11.9054
IIIIIIIII}BB}C	chr19:46285504-46285809(-)$1	305	261	275	12.6276
HHHHHHHH}A}CCC	chr1:22263566-22263829(-)$1	263	191	205	9.3507
IIIIIIIII}ABB}	chr7:100136949-100137244(+)$1	295	196	210	12.5388
}HHHHHHHH~~~~E	chr11:58346514-58346902(+)$1	388	338	352	10.2325
JJJJJJJJ{CCCBB	chr16:75270539-75270829(-)$1	290	16	30	11.8719
JJJJJJJJJJ}CCC	chr7:77166746-77167019(+)$1	273	228	242	12.2224
JJJJJJJJJYYCCC	chr14:23790667-23790915(+)$1	248	188	202	13.0545
JJJJJJJJJEEEEE	chr3:196730158-196730422(+)$1	264	223	237	12.1192
IIIIIIIII?????	chr19:10488720-10488995(-)$1	275	187	201	10.7332
IIIIIIIII}CCC:	chr1:234614167-234614444(-)$1	277	259	273	12.3272
IIIIIIIII}A}DD	chrX:130412620-130412913(-)$1	293	261	275	12.0910
JJJJJJJJJ}DDDD	chr14:24901511-24901776(+)$1	265	229	243	12.1320
IIIIIIIII}ACCC	chr20:33872188-33872480(-)$1	292	168	182	12.7325
IIIIIIIII:EEEE	chr16:69165125-69165391(-)$1	266	168	182	11.5562
JJJJJJJ}AYYA}C	chr14:103568751-103569030(+)$1	279	251	265	11.7035
IIIIIIIII~~~~B	chr5:176980956-176981271(-)$1	315	221	235	12.7313
IIIIIIIII}CCC:	chr11:2154323-2154530(-)$1	207	156	170	12.3272
fHHHHHHHHYYCCC	chr19:3543851-3544101(-)$1	250	120	134	8.6272
IIIIIIII{DDDD{	chr1:156347844-156348107(+)$1	263	100	114	10.2960
IIIIIIIII}CCC:	chr1:38273923-38274203(+)$1	280	264	278	12.3272
JJJJJJJJJJYYBB	chr5:154135274-154135535(+)$1	261	246	260	12.1495
JJJJJJJJAYYBB}	chr16:75018751-75019068(-)$1	317	266	280	12.2262
IIIIIIII{BB{CC	chr22:51153087-51153421(+)$1	334	86	100	11.2928
IIIIIII}AZZZA}	chr7:100136904-100137149(+)$1	245	200	214	11.0973
HHHHHHHH{EEEEE	chr17:48784864-48785161(-)$1	297	43	57	9.6066
IIIIIIIII:DDDD	chr11:2154311-2154523(-)$1	212	149	163	11.0705
IIIIFFFFFF}CCC	chr20:2819569-2819833(-)$1	264	249	263	9.3547
}HHHHHHHH}CCC|	chr1:53686057-53686353(-)$1	296	248	262	9.5451
IIIIIIIII?????	chr11:2154126-2154334(-)$1	208	177	191	10.7332
HHHHHHHH{CCCCC	chr14:24901278-24901568(+)$1	290	7	21	9.7253
IIIIIIIII}DDDD	chr12:72056740-72057016(-)$1	276	237	251	12.0384
I}HHHHHHHH}CCC	chr1:156347907-156348179(+)$1	272	199	213	9.6127
IIIIIIIII:::::	chr11:2154068-2154326(-)$1	258	38	52	9.8925
HHHHHHH}A}EEEE	chr7:128828952-128829223(+)$1	271	194	208	9.5582
YHHHHHHHHYYBB~	chr7:128864763-128865062(+)$1	299	221	235	9.7605
IIIIIIII{BBKKE	chr16:69419556-69419888(-)$1	332	3	17	10.4674

#otherMatches

#Seq PSSM
CCCCCCGUAUUUGC	chr6:43596675-43596990(-)$1	315	255	269	12.0384
CUCUGAUUCAGACA	chr20:3765580-3765910(-)$1	330	306	320	9.8925
CCGCGGGCCGCGCG	chr9:126692066-126692363(-)$1	297	264	278	12.6352
GGGGGGCGGGGGAU	chr1:27320166-27320408(+)$1	242	99	113	12.0255
GCGGGGUCUCGGUC	chr19:2270384-2270662(+)$1	278	251	265	12.4870
GCUGAGCUUGGGGC	chr19:55752325-55752617(-)$1	292	238	252	12.7783
GGCGUGGCGGCUUG	chr22:37415720-37416003(+)$1	283	204	218	11.9629
UGGUGGCUAUGGGA	chr1:156351191-156351519(+)$1	328	240	254	12.1320
CGGCCGGggaggag	chr10:103454217-103454465(-)$1	248	78	92	12.1192
UUUUCCCCCUCUGC	chr5:86564396-86564685(+)$1	289	270	284	8.3787
GGUGCAGCCCCAGC	chr2:208576444-208576724(+)$1	280	48	62	11.2842
AACGAGUGGGUGCG	chr12:2113426-2113699(-)$1	273	243	257	11.3438
GGCUGGGUGGAGGG	chr19:7679895-7680180(+)$1	285	96	110	9.9316
agagguggcggcgg	chr4:39699790-39700053(+)$1	263	85	99	9.1376
gggggggAAGAUGC	chrX:20284609-20284890(-)$1	281	130	144	11.7618
ACAUGGACUAUGUG	chr5:180651114-180651377(+)$1	263	240	254	10.7332
uccucauucacuuc	chr16:90086229-90086512(+)$1	283	265	279	11.5846
CGGGCCUAGUCCGG	chr11:61197135-61197429(-)$1	294	2	16	11.9054
GCUGGAGCCCCUGC	chr19:46285504-46285809(-)$1	305	261	275	12.6276
cggggcagaggggc	chr1:22263566-22263829(-)$1	263	191	205	9.3507
UAUCACCGUGGGCA	chr7:100136949-100137244(+)$1	295	196	210	12.5388
CCCUGAGGCGGUCG	chr11:58346514-58346902(+)$1	388	338	352	10.2325
GGAGAAGGGCCUGC	chr16:75270539-75270829(-)$1	290	16	30	11.8719
CCUCGCUGUCGCGU	chr7:77166746-77167019(+)$1	273	228	242	12.2224
CUGCUGCUGGAGCC	chr14:23790667-23790915(+)$1	248	188	202	13.0545
GCCCGCUCUGGGGU	chr3:196730158-196730422(+)$1	264	223	237	12.1192
cacccacccaucca	chr19:10488720-10488995(-)$1	275	187	201	10.7332
GGUCCGGCCGCGUA	chr1:234614167-234614444(-)$1	277	259	273	12.3272
AACCCUCUGGUGCA	chrX:130412620-130412913(-)$1	293	261	275	12.0910
CCCUGUGCCUUGCC	chr14:24901511-24901776(+)$1	265	229	243	12.1320
GCCUCCGCCGCCCC	chr20:33872188-33872480(-)$1	292	168	182	12.7325
UUCCACCCAUUGCU	chr16:69165125-69165391(-)$1	266	168	182	11.5562
GCCUUCCACAGCGC	chr14:103568751-103569030(+)$1	279	251	265	11.7035
CGCUCCUGCGACUA	chr5:176980956-176981271(-)$1	315	221	235	12.7313
GCCUGCCUGCCCUC	chr11:2154323-2154530(-)$1	207	156	170	12.3272
CGGGGACCGCUGGC	chr19:3543851-3544101(-)$1	250	120	134	8.6272
GAGGGAUGGAGUCG	chr1:156347844-156348107(+)$1	263	100	114	10.2960
CUCUCUCCCGGGCA	chr1:38273923-38274203(+)$1	280	264	278	12.3272
CGGGCAGCAGGAGC	chr5:154135274-154135535(+)$1	261	246	260	12.1495
ACGCGGCUGCUUCC	chr16:75018751-75019068(-)$1	317	266	280	12.2262
GGGGUCUGAGUUCU	chr22:51153087-51153421(+)$1	334	86	100	11.2928
CACUGCUUCGAGUG	chr7:100136904-100137149(+)$1	245	200	214	11.0973
CUCCCCAUggccgg	chr17:48784864-48785161(-)$1	297	43	57	9.6066
GCCUGCCUGCCCUC	chr11:2154311-2154523(-)$1	212	149	163	11.0705
UACUCCGAGUACCU	chr20:2819569-2819833(-)$1	264	249	263	9.3547
GGCACCCACGGCUG	chr1:53686057-53686353(-)$1	296	248	262	9.5451
GGACGUUUCCAUCA	chr11:2154126-2154334(-)$1	208	177	191	10.7332
GGAGUUGCCUGGGG	chr14:24901278-24901568(+)$1	290	7	21	9.7253
GGCGGUCGGCGCUG	chr12:72056740-72057016(-)$1	276	237	251	12.0384
CGCGGGUUCUGUAC	chr1:156347907-156348179(+)$1	272	199	213	9.6127
CUGAUUGCUCUACC	chr11:2154068-2154326(-)$1	258	38	52	9.8925
CGGCGGUGACUGGC	chr7:128828952-128829223(+)$1	271	194	208	9.5582
GCCCCUCCGAGGCG	chr7:128864763-128865062(+)$1	299	221	235	9.7605
CUGUUUCUAUCAUG	chr16:69419556-69419888(-)$1	332	3	17	10.4674

#DB
))))))))).))))	chr6:43596675-43596990(-)$1	1	255	269	12.0384
))))))))).....	chr20:3765580-3765910(-)$1	1	306	320	9.8925
))))))))).))).	chr9:126692066-126692363(-)$1	1	264	278	12.6352
((((((((((((((	chr1:27320166-27320408(+)$1	1	99	113	12.0255
)))))))))..)))	chr19:2270384-2270662(+)$1	1	251	265	12.4870
)))))))))....)	chr19:55752325-55752617(-)$1	1	238	252	12.7783
))))))))).))..	chr22:37415720-37416003(+)$1	1	204	218	11.9629
))))))))).))))	chr1:156351191-156351519(+)$1	1	240	254	12.1320
((((((((((((((	chr10:103454217-103454465(-)$1	1	78	92	12.1192
.))))))))..)))	chr5:86564396-86564685(+)$1	1	270	284	8.3787
((((((((.((.((	chr2:208576444-208576724(+)$1	1	48	62	11.2842
))))))))))))).	chr12:2113426-2113699(-)$1	1	243	257	11.3438
.))))))))..)))	chr19:7679895-7680180(+)$1	1	96	110	9.9316
((((((((.((.((	chr4:39699790-39700053(+)$1	1	85	99	9.1376
((((((((.(((((	chrX:20284609-20284890(-)$1	1	130	144	11.7618
))))))))).....	chr5:180651114-180651377(+)$1	1	240	254	10.7332
))))))))).))))	chr16:90086229-90086512(+)$1	1	265	279	11.5846
((((((((.(((((	chr11:61197135-61197429(-)$1	1	2	16	11.9054
))))))))).)).)	chr19:46285504-46285809(-)$1	1	261	275	12.6276
)))))))).).)))	chr1:22263566-22263829(-)$1	1	191	205	9.3507
))))))))).))).	chr7:100136949-100137244(+)$1	1	196	210	12.5388
.))))))))....)	chr11:58346514-58346902(+)$1	1	338	352	10.2325
((((((((.(((((	chr16:75270539-75270829(-)$1	1	16	30	11.8719
)))))))))).)))	chr7:77166746-77167019(+)$1	1	228	242	12.2224
)))))))))..)))	chr14:23790667-23790915(+)$1	1	188	202	13.0545
))))))))))))))	chr3:196730158-196730422(+)$1	1	223	237	12.1192
))))))))).....	chr19:10488720-10488995(-)$1	1	187	201	10.7332
))))))))).))).	chr1:234614167-234614444(-)$1	1	259	273	12.3272
))))))))).).))	chrX:130412620-130412913(-)$1	1	261	275	12.0910
))))))))).))))	chr14:24901511-24901776(+)$1	1	229	243	12.1320
))))))))).))))	chr20:33872188-33872480(-)$1	1	168	182	12.7325
))))))))).((((	chr16:69165125-69165391(-)$1	1	168	182	11.5562
))))))).)..).)	chr14:103568751-103569030(+)$1	1	251	265	11.7035
)))))))))....)	chr5:176980956-176981271(-)$1	1	221	235	12.7313
))))))))).))).	chr11:2154323-2154530(-)$1	1	156	170	12.3272
)))))))))..)))	chr19:3543851-3544101(-)$1	1	120	134	8.6272
((((((((.((((.	chr1:156347844-156348107(+)$1	1	100	114	10.2960
))))))))).))).	chr1:38273923-38274203(+)$1	1	264	278	12.3272
))))))))))..))	chr5:154135274-154135535(+)$1	1	246	260	12.1495
)))))))))..)).	chr16:75018751-75019068(-)$1	1	266	280	12.2262
((((((((.((.((	chr22:51153087-51153421(+)$1	1	86	100	11.2928
))))))).)...).	chr7:100136904-100137149(+)$1	1	200	214	11.0973
((((((((.(((((	chr17:48784864-48785161(-)$1	1	43	57	9.6066
))))))))).((((	chr11:2154311-2154523(-)$1	1	149	163	11.0705
)))))))))).)))	chr20:2819569-2819833(-)$1	1	249	263	9.3547
.)))))))).))).	chr1:53686057-53686353(-)$1	1	248	262	9.5451
))))))))).....	chr11:2154126-2154334(-)$1	1	177	191	10.7332
((((((((.(((((	chr14:24901278-24901568(+)$1	1	7	21	9.7253
))))))))).))))	chr12:72056740-72057016(-)$1	1	237	251	12.0384
).)))))))).)))	chr1:156347907-156348179(+)$1	1	199	213	9.6127
(((((((((.....	chr11:2154068-2154326(-)$1	1	38	52	9.8925
))))))).).))))	chr7:128828952-128829223(+)$1	1	194	208	9.5582
.))))))))..)).	chr7:128864763-128865062(+)$1	1	221	235	9.7605
((((((((.((..(	chr16:69419556-69419888(-)$1	1	3	17	10.4674

#PSSM
I : 0.49	J : 0.29	H : 0.09	} : 0.05	: : 0.01	f : 0.01	Y : 0.01	
I : 0.48	J : 0.29	H : 0.20	} : 0.01	
I : 0.48	J : 0.29	H : 0.22	
I : 0.48	J : 0.29	H : 0.22	
I : 0.46	J : 0.29	H : 0.22	F : 0.01	
I : 0.46	J : 0.29	H : 0.22	F : 0.01	
I : 0.46	J : 0.29	H : 0.22	F : 0.01	
I : 0.44	J : 0.27	H : 0.20	} : 0.05	F : 0.01	
I : 0.37	J : 0.20	{ : 0.18	H : 0.12	A : 0.07	} : 0.01	F : 0.01	
} : 0.29	Y : 0.14	E : 0.09	: : 0.07	B : 0.07	~ : 0.05	J : 0.05	? : 0.05	A : 0.03	C : 0.03	D : 0.01	Z : 0.01	F : 0.01	H : 0.01	
C : 0.16	Y : 0.16	E : 0.12	D : 0.11	B : 0.11	} : 0.07	~ : 0.05	? : 0.05	A : 0.05	: : 0.03	F : 0.01	Z : 0.01	
C : 0.29	D : 0.14	E : 0.12	B : 0.09	~ : 0.05	{ : 0.05	? : 0.05	: : 0.03	F : 0.03	} : 0.01	A : 0.01	Y : 0.01	Z : 0.01	K : 0.01	
C : 0.31	D : 0.16	E : 0.12	B : 0.11	: : 0.05	~ : 0.05	? : 0.05	F : 0.03	} : 0.03	A : 0.01	K : 0.01	
C : 0.24	E : 0.18	D : 0.14	: : 0.11	} : 0.07	B : 0.07	? : 0.05	F : 0.03	| : 0.03	{ : 0.01	~ : 0.01	

#score	605.867794319937
#seq	54
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_UTR_m1_run2.txt

#BEAR
fffff^^^^^^^^^^^^^^^^^^^ffffff:	chr15:91426377-91426643(+)$1	266	119	150	32.3250
""dddd^^^^^^^^^^^^^^^^^^dddd333	chr2:242208498-242208771(-)$1	273	36	67	32.3276
ffff^^^^^^^^^^^^^^^^^^ffffff444	chr11:709663-709902(+)$1	239	72	103	32.6434
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:33421226-33421513(+)$1	287	122	153	40.3255
ffffff^^^^^^^^^^^^^^^^^^ffffffb	chr14:21561442-21561745(-)$1	303	131	162	31.1196
eeee^^^^^^^^^^^^^^^^^^^^eeeee::	chr11:61183650-61183890(-)$1	240	80	111	33.1269
ffff^^^^^^^^^^^^^^^^^^^^ffffff]	chr20:3848710-3849015(+)$1	305	11	42	34.5210
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:14203528-14203832(-)$1	304	81	112	40.0191
ffff^^^^^^^^^^^^^^^^^^^^^^^^^^f	chr5:172342636-172343006(+)$1	370	203	234	38.8433
dddd^^^^^^^^^^^^^^^^^^^^^^^^^dd	chr19:53120143-53120420(-)$1	277	92	123	38.1607
!!bb^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:66011655-66011992(+)$1	337	43	74	39.6126
dddd^^^^^^^^^^^^^^^^^^^^^^^dddd	chr7:143087765-143088034(+)$1	269	105	136	36.5670
hdddd^^^^^^^^^^^^^^^^^^^^dddd::	chr19:50816828-50817074(-)$1	246	214	245	32.0827
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^e	chr2:232672298-232672597(+)$1	299	214	245	39.7623
gggg^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:7024692-7024967(+)$1	275	148	179	39.4761
eeee^^^^^^^^^^^^^^^^^^^^^^eeeee	chr10:102744119-102744370(+)$1	251	100	131	36.0244
ffff^^^^^^^^^^^^^^^^^^^^ffffff2	chr7:137563948-137564221(-)$1	273	147	178	34.4783
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:203797-204077(-)$1	280	99	130	40.3255
[ccc^^^^^^^^^^^^^^^^^^^^cccccc2	chr17:47132638-47132878(+)$1	240	108	139	35.5034
eeeee^^^^^^^^^^^^^^^^^^^eeeee22	chr17:7311248-7311526(+)$1	278	54	85	32.9868
ffff^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:41567464-41567766(+)$1	302	97	128	39.4867
ffff^^^^^^^^^^^^^^^^^^^ffffff22	chr10:121355935-121356188(-)$1	253	95	126	33.0722
[bb^^^^^^^^^^^^^^^^^^^^^^^^^bb]	chr19:50183285-50183567(+)$1	282	139	170	37.6086
:ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:7154835-7155107(-)$1	272	89	120	38.9316
""bb^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr8:144357801-144358089(+)$1	288	177	208	39.5093
dddd^^^^^^^^^^^^^^^^^^^^^^^^^dd	chr17:72833098-72833361(+)$1	263	140	171	38.1607
[ccc^^^^^^^^^^^^^^^^^^^^^ccc]ff	chr22:50683582-50683944(-)$1	362	114	145	36.0971
[ccc^^^^^^^^^^^^^^^^^^ccc]fffff	chr6:30611139-30611393(+)$1	254	49	80	32.1612
eeee^^^^^^^^^^^^^^^^^^^^^^^^eee	chr19:45322973-45323223(+)$1	250	43	74	37.5061
eeee^^^^^^^^^^^^^^^^^^^^^^eeeee	chr1:27480961-27481274(-)$1	313	85	116	36.0244
!!bb^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:102743906-102744182(+)$1	276	58	89	39.6126
a[bb^^^^^^^^^^^^^^^^^^^^^^^^^^b	chr17:7093505-7093955(-)$1	450	245	276	38.7322
dddd^^^^^^^^^^^^^^^^^^^dddd4444	chr11:204167-204431(-)$1	264	112	143	34.4223
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:450343-450605(+)$1	262	37	68	40.3255
^^^^^^^^^^^^^^^^^^^^^^^^=======	chr4:185309205-185309549(-)$1	344	211	242	35.6464
ffffff^^^^^^^^^^^^^^^^^^ffffff]	chr17:36883020-36883265(+)$1	245	43	74	31.3864
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:57824515-57824837(-)$1	322	106	137	40.3255
fff^^^^^^^^^^^^^^^^^^^^^ffffff5	chr20:3019071-3019338(+)$1	267	143	174	34.4901
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr6:45345466-45345762(-)$1	296	53	84	38.8959
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:32138452-32138754(-)$1	302	243	274	39.5067
ffff^^^^^^^^^^^^^^^^^^^ffffff22	chr10:121355868-121356135(-)$1	267	42	73	33.0722
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:58005267-58005577(+)$1	310	86	117	39.5067
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:29999295-29999553(+)$1	258	72	103	40.3255
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr9:139942752-139943002(-)$1	250	80	111	40.3255
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^e	chr10:102743828-102744104(+)$1	276	153	184	39.7623
eeee^^^^^^^^^^^^^^^^^^eeeee7777	chr14:35098775-35099075(-)$1	300	96	127	31.7946
ffff^^^^^^^^^^^^^^^^^^ffffff]dd	chr7:5342521-5342834(+)$1	313	105	136	31.2939
dddccc^^^^^^^^^^^^^^^^^^ccc]ddd	chr1:236140713-236140969(-)$1	256	125	156	31.8583
d^^^^^^^^^^^^^^^^^^^^^^^dddd===	chr1:227179470-227179735(-)$1	265	102	133	34.9281
[ccc^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr19:45323602-45323849(+)$1	247	159	190	38.2794
^^^^^^^^^^^^^^^^^^^^^^^^bbbb333	chr6:43472749-43473011(+)$1	262	116	147	35.9287
dddd^^^^^^^^^^^^^^^^^^^^^^dddd:	chr9:139942818-139943174(-)$1	356	120	151	35.2984
^^^^^^^^^^^^^^^^^^^^^^^^bbbb]bb	chr9:136528770-136529110(-)$1	340	220	251	34.7378
dddd^^^^^^^^^^^^^^^^^^^^dddd22e	chr5:40830073-40830336(-)$1	263	130	161	34.1478
gggg^^^^^^^^^^^^^^^^^^^^^gggggg	chr11:57585396-57585695(+)$1	299	58	89	35.1328
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr19:50816988-50817258(-)$1	270	47	78	39.4821
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:23540664-23540937(-)$1	273	86	117	39.5067
"ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2153787-2153992(-)$1	205	9	40	40.0105
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:57917636-57917855(+)$1	219	111	142	39.5067
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:219081941-219082237(+)$1	296	127	158	40.3255
"ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:47452180-47452464(+)$1	284	73	104	40.0105
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:200322714-200323029(-)$1	315	184	215	40.3255
!!ccc^^^^^^^^^^^^^^^^^^ccc22eee	chr12:49332430-49332708(-)$1	278	160	191	32.3125
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:94844258-94844492(-)$1	234	90	121	40.0191
gg^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr20:61521312-61521582(-)$1	270	173	204	34.6661
$ccc^^^^^^^^^^^^^^^^^^^^ccc4444	chr16:8948336-8948608(+)$1	272	156	187	36.7885
[ccc^^^^^^^^^^^^^^^^^^^^^ccc]cc	chr7:767181-767460(+)$1	279	16	47	36.3435

#otherMatches

#Seq PSSM
AGGGGUGCCCCCUCCUCUCCCAUCCCCCUGC	chr15:91426377-91426643(+)$1	266	119	150	32.3250
ACUGUCAUUGCUUUUCCCAUUUUAGACACAU	chr2:242208498-242208771(-)$1	273	36	67	32.3276
GAGGCCUCUGGACCCUAAUCAACCUUCCGAA	chr11:709663-709902(+)$1	239	72	103	32.6434
CCUUAUCUAUCCCCCCUCACUGUCCCCUUUU	chr6:33421226-33421513(+)$1	287	122	153	40.3255
CACCUCCCCCCACCCCAUCUUCCCGAGGUGA	chr14:21561442-21561745(-)$1	303	131	162	31.1196
CCCACCACCUCUCUCCUCAAGCUUUGGGGUC	chr11:61183650-61183890(-)$1	240	80	111	33.1269
UCAGCAACCUAAUGAUCUCUAUCUCUGAACA	chr20:3848710-3849015(+)$1	305	11	42	34.5210
ACAGAAACACCAGcugcucccccucaucccc	chr19:14203528-14203832(-)$1	304	81	112	40.0191
UCAGAACGCCCUUCCUCCAGACCCUGACACC	chr5:172342636-172343006(+)$1	370	203	234	38.8433
gguaucuuucccaauguucucccuccccuug	chr19:53120143-53120420(-)$1	277	92	123	38.1607
UCUGUUUCAUCUCCCAUUCAUCUCCCUCCUC	chr11:66011655-66011992(+)$1	337	43	74	39.6126
CUAGCCCCUCCCAUUUCCAACCCCUCCCUAG	chr7:143087765-143088034(+)$1	269	105	136	36.5670
CAGACCCUCCCCAAGCACCCUCUUUGUCUUA	chr19:50816828-50817074(-)$1	246	214	245	32.0827
UUACUCCCCCUCACCCACUCCCUCCUUCCCC	chr2:232672298-232672597(+)$1	299	214	245	39.7623
GCAGCCAGCGCCUCCCUACCCACCCCCCACC	chr12:7024692-7024967(+)$1	275	148	179	39.4761
UGCCCAAACCCUUUCUCUUUCUCCCAGGCAG	chr10:102744119-102744370(+)$1	251	100	131	36.0244
UUGUCCUCCUCGUCCCCUACCUCAACAAAGC	chr7:137563948-137564221(-)$1	273	147	178	34.4783
CACCCUUCCCCUCCCCUCCUCCUUCCUUCCA	chr11:203797-204077(-)$1	280	99	130	40.3255
UGCUUCUCUCCCUUCUCCCCUCCCAGCCAGC	chr17:47132638-47132878(+)$1	240	108	139	35.5034
CCUGCCCCUCUCGCUCCACCCCCCGCAGGUC	chr17:7311248-7311526(+)$1	278	54	85	32.9868
GCAGuccucucacccucccucagcuccccuu	chr6:41567464-41567766(+)$1	302	97	128	39.4867
UGCCUUUUCCUCUGUCCCCAGCCGGUGCCCA	chr10:121355935-121356188(-)$1	253	95	126	33.0722
CCAUUUUCCUUCCCCUCCCCUCCCCAGCUGU	chr19:50183285-50183567(+)$1	282	139	170	37.6086
ugcuuucccccccuccccuucccuuuucccu	chr17:7154835-7155107(-)$1	272	89	120	38.9316
CAGCUCUGCUCUCACUCCCCGUCCCCGUCCC	chr8:144357801-144358089(+)$1	288	177	208	39.5093
CUGCGUCCUUGUCUAAGAAACCUCCACUAGC	chr17:72833098-72833361(+)$1	263	140	171	38.1607
ACGGAAccccgcccacucccaauccccgcgc	chr22:50683582-50683944(-)$1	362	114	145	36.0971
UGGGCAUUUCCUUUAUUUcucucccuuucuc	chr6:30611139-30611393(+)$1	254	49	80	32.1612
GCUUaaccccauccccacccucaaccccaag	chr19:45322973-45323223(+)$1	250	43	74	37.5061
AAGGUCCCAGCCUUCCUUCUUCCUUUCCUUU	chr1:27480961-27481274(-)$1	313	85	116	36.0244
CCACCCUCCCUUCAUUACCCCCACUCCAUAC	chr10:102743906-102744182(+)$1	276	58	89	39.6126
CCUCCCCCAUCCUCUCCCACACACAUUCCAG	chr17:7093505-7093955(-)$1	450	245	276	38.7322
GCCCUCCCUACCCACCUCUCCCUGGGCCUUC	chr11:204167-204431(-)$1	264	112	143	34.4223
ACCAACUACCUCCGUCAGCAAGAACCCAAGC	chr16:450343-450605(+)$1	262	37	68	40.3255
CCUCAAAGCUUCCAUUCCACAUCCGGAGGAG	chr4:185309205-185309549(-)$1	344	211	242	35.6464
CUCCUGCACCCCACCCCCACCAACCAGGGGA	chr17:36883020-36883265(+)$1	245	43	74	31.3864
uuccccccuuuucuuccccucuccccccucc	chr12:57824515-57824837(-)$1	322	106	137	40.3255
CCCCAUCCCCACCACUGAUAUCAUGGGGAGU	chr20:3019071-3019338(+)$1	267	143	174	34.4901
GGGCUCACGCCAUCUUGUACCCCCCCCAUCG	chr6:45345466-45345762(-)$1	296	53	84	38.8959
GGGGCCCCCCUCCCUGCCUAGUCUCCUCCUU	chr6:32138452-32138754(-)$1	302	243	274	39.5067
UGCCUUUUCCUCUGUCCCCAGCCGGUGCCCA	chr10:121355868-121356135(-)$1	267	42	73	33.0722
CCAGCCUCCCCUACCAUCCCUCCCCCUUCCA	chr12:58005267-58005577(+)$1	310	86	117	39.5067
UUUCUCCAGUCCCUAGUCCUCUCUUUUCACC	chr16:29999295-29999553(+)$1	258	72	103	40.3255
ccaccccACCACUGUCUUCUCCAUCCUUCCA	chr9:139942752-139943002(-)$1	250	80	111	40.3255
CCCCCACUCCAUACCCUUCUCCCAACUUUUU	chr10:102743828-102744104(+)$1	276	153	184	39.7623
CUGCACCGCGCCCCACCCUCCCGCAGCCCUU	chr14:35098775-35099075(-)$1	300	96	127	31.7946
GAGGGCCCCUCCCCUGUCCCCACCUCAGUGC	chr7:5342521-5342834(+)$1	313	105	136	31.2939
GUGAACAGAACCUCCCAAAUUUGAGUUGCAC	chr1:236140713-236140969(-)$1	256	125	156	31.8583
UUCUCCUCUCUCCCUUCUCUUCUCAGGCAGG	chr1:227179470-227179735(-)$1	265	102	133	34.9281
ucugcauccccaugcccaacccuaaccccag	chr19:45323602-45323849(+)$1	247	159	190	38.2794
ACCCAACCCCGUCUCCACCACACCCACUGUA	chr6:43472749-43473011(+)$1	262	116	147	35.9287
guacucccaccccucccacaaccccuguacc	chr9:139942818-139943174(-)$1	356	120	151	35.2984
CCUAGUCCUGCGAAAACCCCCAAACCAGAUA	chr9:136528770-136529110(-)$1	340	220	251	34.7378
ACUUCCCUCCCAUCUUAGUUCACAAAGUCAG	chr5:40830073-40830336(-)$1	263	130	161	34.1478
GCACAACCCACCACCCCCUUUACUCGUGCAU	chr11:57585396-57585695(+)$1	299	58	89	35.1328
CGCCACAUCUCCCAAUCCCCACACACUCCUG	chr19:50816988-50817258(-)$1	270	47	78	39.4821
CAGCUCCCUCCCUCUUUUCUUUCCCCUCCCC	chr14:23540664-23540937(-)$1	273	86	117	39.5067
UUAAACACCCUUCACAUACCCUCCCCCCAAA	chr11:2153787-2153992(-)$1	205	9	40	40.0105
GCCCAACCCUUCCUCUCCCAUCCUCAAAAAA	chr17:57917636-57917855(+)$1	219	111	142	39.5067
CUCCCCUAACCUCCUACCCCACCCAGCCCCA	chr2:219081941-219082237(+)$1	296	127	158	40.3255
CAGGACUCCUACCCCCACAAUCCCCCUACCC	chr3:47452180-47452464(+)$1	284	73	104	40.0105
CCAGAGACUUCCCCUACCCCCACCCCAAAUU	chr2:200322714-200323029(-)$1	315	184	215	40.3255
CAAUCCCUAAUUGCUGUCCUGAUGAUGAGUC	chr12:49332430-49332708(-)$1	278	160	191	32.3125
UCUUCAUGUCCCCCUGCUCAUCCCCCACUCC	chr14:94844258-94844492(-)$1	234	90	121	40.0191
GUUCCCACCCACACCCCUCAUGCCGCACCCU	chr20:61521312-61521582(-)$1	270	173	204	34.6661
CCUAGAACCAACCAAGCCAAGAAUUAGAAAA	chr16:8948336-8948608(+)$1	272	156	187	36.7885
CUGCUCCCUUGUCCUCUACCCCCAUGUACCU	chr7:767181-767460(+)$1	279	16	47	36.3435

#DB
(((((...................)))))).	chr15:91426377-91426643(+)$1	1	119	150	32.3250
..((((..................))))...	chr2:242208498-242208771(-)$1	1	36	67	32.3276
((((..................))))))...	chr11:709663-709902(+)$1	1	72	103	32.6434
...............................	chr6:33421226-33421513(+)$1	1	122	153	40.3255
((((((..................))))))(	chr14:21561442-21561745(-)$1	1	131	162	31.1196
((((....................)))))..	chr11:61183650-61183890(-)$1	1	80	111	33.1269
((((....................)))))).	chr20:3848710-3849015(+)$1	1	11	42	34.5210
.(((...........................	chr19:14203528-14203832(-)$1	1	81	112	40.0191
((((..........................)	chr5:172342636-172343006(+)$1	1	203	234	38.8433
((((.........................))	chr19:53120143-53120420(-)$1	1	92	123	38.1607
..((...........................	chr11:66011655-66011992(+)$1	1	43	74	39.6126
((((.......................))))	chr7:143087765-143088034(+)$1	1	105	136	36.5670
)((((....................))))..	chr19:50816828-50817074(-)$1	1	214	245	32.0827
..............................)	chr2:232672298-232672597(+)$1	1	214	245	39.7623
((((...........................	chr12:7024692-7024967(+)$1	1	148	179	39.4761
((((......................)))))	chr10:102744119-102744370(+)$1	1	100	131	36.0244
((((....................)))))).	chr7:137563948-137564221(-)$1	1	147	178	34.4783
...............................	chr11:203797-204077(-)$1	1	99	130	40.3255
.(((....................)))))).	chr17:47132638-47132878(+)$1	1	108	139	35.5034
(((((...................)))))..	chr17:7311248-7311526(+)$1	1	54	85	32.9868
((((...........................	chr6:41567464-41567766(+)$1	1	97	128	39.4867
((((...................))))))..	chr10:121355935-121356188(-)$1	1	95	126	33.0722
.((.........................)).	chr19:50183285-50183567(+)$1	1	139	170	37.6086
.(((...........................	chr17:7154835-7155107(-)$1	1	89	120	38.9316
..((...........................	chr8:144357801-144358089(+)$1	1	177	208	39.5093
((((.........................))	chr17:72833098-72833361(+)$1	1	140	171	38.1607
.(((.....................))).))	chr22:50683582-50683944(-)$1	1	114	145	36.0971
.(((..................))).)))))	chr6:30611139-30611393(+)$1	1	49	80	32.1612
((((........................)))	chr19:45322973-45323223(+)$1	1	43	74	37.5061
((((......................)))))	chr1:27480961-27481274(-)$1	1	85	116	36.0244
..((...........................	chr10:102743906-102744182(+)$1	1	58	89	39.6126
(.((..........................)	chr17:7093505-7093955(-)$1	1	245	276	38.7322
((((...................))))....	chr11:204167-204431(-)$1	1	112	143	34.4223
...............................	chr16:450343-450605(+)$1	1	37	68	40.3255
........................)))))))	chr4:185309205-185309549(-)$1	1	211	242	35.6464
((((((..................)))))).	chr17:36883020-36883265(+)$1	1	43	74	31.3864
...............................	chr12:57824515-57824837(-)$1	1	106	137	40.3255
(((.....................)))))).	chr20:3019071-3019338(+)$1	1	143	174	34.4901
((((..........................)	chr6:45345466-45345762(-)$1	1	53	84	38.8959
((((...........................	chr6:32138452-32138754(-)$1	1	243	274	39.5067
((((...................))))))..	chr10:121355868-121356135(-)$1	1	42	73	33.0722
((((...........................	chr12:58005267-58005577(+)$1	1	86	117	39.5067
...............................	chr16:29999295-29999553(+)$1	1	72	103	40.3255
...............................	chr9:139942752-139943002(-)$1	1	80	111	40.3255
..............................)	chr10:102743828-102744104(+)$1	1	153	184	39.7623
((((..................)))))....	chr14:35098775-35099075(-)$1	1	96	127	31.7946
((((..................)))))).))	chr7:5342521-5342834(+)$1	1	105	136	31.2939
((((((..................))).)))	chr1:236140713-236140969(-)$1	1	125	156	31.8583
(.......................)))))))	chr1:227179470-227179735(-)$1	1	102	133	34.9281
.(((........................)))	chr19:45323602-45323849(+)$1	1	159	190	38.2794
........................))))...	chr6:43472749-43473011(+)$1	1	116	147	35.9287
((((......................)))).	chr9:139942818-139943174(-)$1	1	120	151	35.2984
........................)))).))	chr9:136528770-136529110(-)$1	1	220	251	34.7378
((((....................))))..)	chr5:40830073-40830336(-)$1	1	130	161	34.1478
((((.....................))))))	chr11:57585396-57585695(+)$1	1	58	89	35.1328
(((...........................)	chr19:50816988-50817258(-)$1	1	47	78	39.4821
((((...........................	chr14:23540664-23540937(-)$1	1	86	117	39.5067
.(((...........................	chr11:2153787-2153992(-)$1	1	9	40	40.0105
((((...........................	chr17:57917636-57917855(+)$1	1	111	142	39.5067
...............................	chr2:219081941-219082237(+)$1	1	127	158	40.3255
.(((...........................	chr3:47452180-47452464(+)$1	1	73	104	40.0105
...............................	chr2:200322714-200323029(-)$1	1	184	215	40.3255
..(((..................)))..)))	chr12:49332430-49332708(-)$1	1	160	191	32.3125
.(((...........................	chr14:94844258-94844492(-)$1	1	90	121	40.0191
((......................)))))))	chr20:61521312-61521582(-)$1	1	173	204	34.6661
.(((....................)))....	chr16:8948336-8948608(+)$1	1	156	187	36.7885
.(((.....................))).))	chr7:767181-767460(+)$1	1	16	47	36.3435

#PSSM
^ : 0.19	d : 0.19	f : 0.17	[ : 0.11	e : 0.08	" : 0.05	! : 0.04	g : 0.04	h : 0.01	: : 0.01	a : 0.01	c : 0.01	$ : 0.01	
^ : 0.20	d : 0.19	f : 0.17	c : 0.17	e : 0.08	! : 0.04	g : 0.04	" : 0.02	b : 0.01	[ : 0.01	
^ : 0.22	d : 0.20	c : 0.19	f : 0.17	e : 0.08	b : 0.07	g : 0.02	
^ : 0.26	d : 0.19	c : 0.19	f : 0.16	e : 0.08	b : 0.05	g : 0.02	
^ : 0.88	f : 0.04	d : 0.02	c : 0.02	e : 0.01	
^ : 0.94	f : 0.02	d : 0.01	c : 0.01	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.94	f : 0.02	c : 0.01	e : 0.01	
^ : 0.88	f : 0.05	c : 0.02	d : 0.01	e : 0.01	
^ : 0.61	f : 0.14	c : 0.07	d : 0.05	e : 0.04	b : 0.02	= : 0.01	g : 0.01	
^ : 0.55	f : 0.14	c : 0.08	d : 0.07	e : 0.04	b : 0.02	g : 0.02	] : 0.01	= : 0.01	
^ : 0.50	f : 0.16	d : 0.08	e : 0.07	c : 0.07	b : 0.02	g : 0.02	= : 0.01	2 : 0.01	
^ : 0.49	f : 0.16	d : 0.08	e : 0.05	c : 0.04	4 : 0.02	b : 0.02	g : 0.02	= : 0.01	7 : 0.01	] : 0.01	2 : 0.01	
^ : 0.44	f : 0.13	e : 0.08	d : 0.05	] : 0.05	4 : 0.04	3 : 0.02	c : 0.02	= : 0.02	g : 0.02	b : 0.01	7 : 0.01	2 : 0.01	
^ : 0.41	f : 0.11	d : 0.08	e : 0.05	2 : 0.05	4 : 0.04	c : 0.04	3 : 0.02	: : 0.02	b : 0.02	= : 0.02	g : 0.02	7 : 0.01	
^ : 0.32	e : 0.10	d : 0.08	2 : 0.07	: : 0.05	4 : 0.04	b : 0.04	] : 0.04	f : 0.04	c : 0.04	3 : 0.02	= : 0.02	g : 0.02	5 : 0.01	7 : 0.01	

#score	2457.8248963475585
#seq	67
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_UTR_m2_run2.txt

#BEAR
ggggg[ccc[allla]ccc]gggggg	chr12:123997759-123998014(-)$1	255	183	209	10.3720
c!!gggggggooooooggggggg22c	chr16:24836696-24836982(+)$1	286	109	135	13.2572
e[eeeeecccooooooccc]eeeee]	chr6:64293190-64293460(+)$1	270	160	186	13.4283
!ggggggg[aooooooa]ggggggg]	chr1:52497563-52497879(-)$1	316	210	236	13.3700
fffff"""bboooooobb4444ffff	chr5:95222833-95223116(-)$1	283	86	112	12.4241
=====!!cccooooooccc22=====	chr20:34238083-34238333(-)$1	250	184	210	15.3426
fffff[ddddoooooodddd]fffff	chr13:76432715-76432999(+)$1	284	66	92	12.3976
eeee[ddddoooooodddd]eeeeed	chrX:150156300-150156560(+)$1	260	143	169	11.1045
===========mmmm===========	chr10:133781687-133781959(-)$1	272	159	185	9.5691
fffff[ddddoooooodddd]fffff	chr2:55462649-55462903(+)$1	254	4	30	12.3976
ee!!a!!cccooooooccc22a22ee	chr15:25223630-25223931(+)$1	301	155	181	14.6207
iiiiiiicccooooooccc>>>>>>>	chr19:42375392-42375661(+)$1	269	98	124	13.1624
[eeeeeddddoooooodddd]eeeee	chr2:11320727-11320995(-)$1	268	122	148	12.0940
:eeeee[cccooooooccc]eeeee:	chr12:56989529-56989804(-)$1	275	146	172	11.8658
Ca[gggggggooooooggggggg]a:	chr9:19376080-19376343(-)$1	263	40	66	11.4754
gggggg[cccooooooccc22ggggg	chr4:159045555-159045837(-)$1	282	75	101	14.5080
cc[bb[ddddoooooodddd]bb444	chr12:93801962-93802237(-)$1	275	24	50	12.3741
eeeebbddddoooooodddd]bb444	chr16:8943082-8943302(+)$1	220	52	78	11.8135
=======cccooooooccc22=====	chr6:26599277-26599533(+)$1	256	73	99	15.1063
ddd[eeeeeaooooooa]eeeee]dd	chr17:45761946-45762212(+)$1	266	82	108	11.7212
[dddd!!cccooooooccc4444ddd	chr6:3272984-3273287(+)$1	303	120	146	13.5458
eee####cccooooooccc666666e	chr2:178087998-178088237(+)$1	239	169	195	11.8880
ddd[ccccccooooooccc]ccc]dd	chr10:70101934-70102219(+)$1	285	97	123	13.6807
"""ccc!!bboooooobb22ccc333	chr5:112213993-112214272(-)$1	279	144	170	13.1083
""ccc!!cccooooooccc22ccc55	chr14:39651602-39651842(+)$1	240	126	152	13.1748
=====[a[cccnnnnnccc]a]====	chr22:38693555-38693851(-)$1	296	15	41	10.4515
ebb!!ddddoooooodddd22bb22e	chr20:48521124-48521456(-)$1	332	171	197	10.8202
ii!!ccc[a[ccclllccc]acccii	chr4:1950161-1950461(+)$1	300	9	35	9.2389
ff[a!!ddddooooooddddafffff	chr3:172118384-172118644(+)$1	260	29	55	12.8791
$$$$bb[cccooooooccc]bb333c	chr13:79888520-79888798(-)$1	278	211	237	13.3092
eeeeffffffooooooffffff22ee	chr18:12985639-12985900(+)$1	261	35	61	11.1419
:iiiiiiiiiooooooiiiiiiiii:	chr12:123778907-123779165(-)$1	258	37	63	11.7861
cc!!ccc[aooooooaccc]cccddd	chr3:137964426-137964768(+)$1	342	246	272	12.8329
ee####ddddooooooddddeeeee]	chr10:133769218-133769496(+)$1	278	177	203	12.6581
e[ccc"""bboooooobb333cccee	chr2:3483239-3483534(+)$1	295	137	163	13.0464
fff[ccc[aooooooaccc]ffffff	chr14:39819811-39820078(+)$1	267	176	202	12.6686
%ccc[a[cccooooooccc]accc55	chr20:31052641-31052903(-)$1	262	217	243	12.5458
fff!!ccc[aooooooa]ccc22fff	chr17:71244923-71245179(+)$1	256	169	195	12.8998
ccc"""ddddoooooodddd333ccc	chr10:38117590-38117864(-)$1	274	134	160	13.5159
bb[gggggggooooooggggggg]bb	chr4:140626678-140627011(+)$1	333	169	195	12.5703
============lll===========	chr12:111157532-111157805(-)$1	273	221	247	10.4187
==========oooooo==========	chr8:22280091-22280394(+)$1	303	57	83	14.4065
ffffff[cccooooooccc]ffffff	chr3:137965465-137965729(+)$1	264	115	141	13.5527
ffff[eeeeeooooooeeeee]ffff	chr3:42689923-42690211(+)$1	288	207	233	11.8703
gg[ccc!!bboooooobb22ccc]gg	chr12:133636088-133636388(+)$1	300	63	89	12.8298
###ccc[cccooooooccc]ccceee	chr16:84497366-84497677(-)$1	311	19	45	14.2537
bb[eeeee[aooooooaeeeee333b	chr20:31026112-31026380(+)$1	268	29	55	12.3709
ccc!!eeeeeooooooeeeee22ccc	chr19:17974029-17974382(+)$1	353	25	51	12.0994
eee####cccnnnnnccc4444eeee	chr14:89696876-89697186(-)$1	310	184	210	9.5087
i####eeeeeooooooeeeee333ii	chr10:120440866-120441130(-)$1	264	152	178	13.0277
:bb!!eeeeeooooooeeeee333bb	chr2:131907320-131907627(+)$1	307	275	301	11.2069
$$$ccc[cccooooooccc]ccc22c	chr6:43304381-43304690(-)$1	309	96	122	13.7777
dddd"""cccooooooccc333dddd	chr22:36622697-36622959(-)$1	262	174	200	13.6584
:ggggggg[aooooooa]ggggggg:	chr6:2785886-2786215(+)$1	329	262	288	11.5410
ffff[bb[aooooooa]bb]ffffff	chr5:112214109-112214436(-)$1	327	195	221	10.9286

#otherMatches

#Seq PSSM
GAGUUUGUGGCUUUGGCACUGACUUC	chr12:123997759-123998014(-)$1	255	183	209	10.3720
UAUUUGUAGGCUCUUUUUUAUAAUGA	chr16:24836696-24836982(+)$1	286	109	135	13.2572
GAAAGUAAGGGAAAAACUUGUAUUUG	chr6:64293190-64293460(+)$1	270	160	186	13.4283
GAGAGUAGAUGUUUUGAGCUACUCUA	chr1:52497563-52497879(-)$1	316	210	236	13.3700
GAGAGCAUGUAGAUUAACUUUUCUCU	chr5:95222833-95223116(-)$1	283	86	112	12.4241
UAGAAAUUGGAGAGAACUAUGUUUUA	chr20:34238083-34238333(-)$1	250	184	210	15.3426
GCAUUUGUAAAUAAACUUGCUGAUGC	chr13:76432715-76432999(+)$1	284	66	92	12.3976
ACACAUCUCUUAUUUGAGAAGUGUCU	chrX:150156300-150156560(+)$1	260	143	169	11.1045
GUGAAAAUUUGGUAGUAAAUUUUCAU	chr10:133781687-133781959(-)$1	272	159	185	9.5691
AGACAUUAUUGUGGCAAAUGUUGUCU	chr2:55462649-55462903(+)$1	254	4	30	12.3976
GUGGAUGAGGGUGAUGCCUAUUAAGC	chr15:25223630-25223931(+)$1	301	155	181	14.6207
UCUGGGucucuuuuuugagucucuug	chr19:42375392-42375661(+)$1	269	98	124	13.1624
UUCUUGAGGCCCUGAAGCUUCCAAGA	chr2:11320727-11320995(-)$1	268	122	148	12.0940
GUUGGGAUAGGUAUGACUGGCUUAAG	chr12:56989529-56989804(-)$1	275	146	172	11.8658
CAGUCAGAAAUAAGAUUUUUUGAGUA	chr9:19376080-19376343(-)$1	263	40	66	11.4754
AAUAAAAUACCUAGAAGUAGAUUUAU	chr4:159045555-159045837(-)$1	282	75	101	14.5080
UGUGGUGUAUUUUAUUGUGCUCCUAU	chr12:93801962-93802237(-)$1	275	24	50	12.3741
AAUGACCUUCCAAAGUGAAGAGUAGC	chr16:8943082-8943302(+)$1	220	52	78	11.8135
auaaaaauauuuuuauGUGCCUUUUU	chr6:26599277-26599533(+)$1	256	73	99	15.1063
UGAAAAAACCUUCCGUGUGUUUUGUC	chr17:45761946-45762212(+)$1	266	82	108	11.7212
AGAGUUUGUCUCCUCCGACCCGCGCU	chr6:3272984-3273287(+)$1	303	120	146	13.5458
ACUGAUUUUGUUAAACCAAUUUGUAA	chr2:178087998-178088237(+)$1	239	169	195	11.8880
CUGAUGUUGAUACUUUUUAUAUACUA	chr10:70101934-70102219(+)$1	285	97	123	13.6807
UUACAUUUAGGAUAAUCUUUAUGGUU	chr5:112213993-112214272(-)$1	279	144	170	13.1083
AACUAAACAGUAUGAUCUGGUUGGCA	chr14:39651602-39651842(+)$1	240	126	152	13.1748
GGGAGGAUGGGAUGACCCCCUGUUCC	chr22:38693555-38693851(-)$1	296	15	41	10.4515
GGCCUCGCGCCCAUUCGUGUUGUAUC	chr20:48521124-48521456(-)$1	332	171	197	10.8202
GGCUUGCUGUGGGACGCCCUCGUACU	chr4:1950161-1950461(+)$1	300	9	35	9.2389
UAUGUAAUACCUAACUGUAUCUGUAG	chr3:172118384-172118644(+)$1	260	29	55	12.8791
UUCUUCUGAAUAUACUUUCUGAUGUU	chr13:79888520-79888798(-)$1	278	211	237	13.3092
uuauaauuuuaauuugaagauugaau	chr18:12985639-12985900(+)$1	261	35	61	11.1419
GCUGCAAGAUGCCAAAAUCUUGUAGA	chr12:123778907-123779165(-)$1	258	37	63	11.7861
AGUAAGCUCUGACUUGGCUCCUUCCA	chr3:137964426-137964768(+)$1	342	246	272	12.8329
CACCCCGUGGACAAUGUCAUUGCCGU	chr10:133769218-133769496(+)$1	278	177	203	12.6581
CCAGCCCAGGACUUCCCCGCAGUUGG	chr2:3483239-3483534(+)$1	295	137	163	13.0464
UGACAAAUGUGCUCUCUUUCUUGUAA	chr14:39819811-39820078(+)$1	267	176	202	12.6686
aagaaggugaaauaucucagcucuga	chr20:31052641-31052903(-)$1	262	217	243	12.5458
uaaaaaGUACUCCCCUGAGCUGAUUA	chr17:71244923-71245179(+)$1	256	169	195	12.8998
gcucuguauucuuccaaauaaauagc	chr10:38117590-38117864(-)$1	274	134	160	13.5159
GCGAAGAGAAUAUUCUUUCUCUUGGC	chr4:140626678-140627011(+)$1	333	169	195	12.5703
AUAGUCUGUUUUCCAAAGAUGGAUUA	chr12:111157532-111157805(-)$1	273	221	247	10.4187
UUUAUUUGUAAGAUUCUAUAAAUAAA	chr8:22280091-22280394(+)$1	303	57	83	14.4065
CAUGUUCUAGAAAUACCUGCAACAUG	chr3:137965465-137965729(+)$1	264	115	141	13.5527
UACAUAUUAGCAAUGUCUAAUUUGUA	chr3:42689923-42690211(+)$1	288	207	233	11.8703
AAAAAUACGUGAAUAAAUUGGUUAUU	chr12:133636088-133636388(+)$1	300	63	89	12.8298
AGUGGCCUGCCUCACUGCAAGCUGUG	chr16:84497366-84497677(-)$1	311	19	45	14.2537
UACAGAGAACAUGAACGUCUCUUCCU	chr20:31026112-31026380(+)$1	268	29	55	12.3709
CCCAACACCUUCUUCUAGGUGCAGGG	chr19:17974029-17974382(+)$1	353	25	51	12.0994
uguggaacucugcgugagauagacaa	chr14:89696876-89697186(-)$1	310	184	210	9.5087
UAAGACUGGGUAUUCUCUUAGAAGAG	chr10:120440866-120441130(-)$1	264	152	178	13.0277
uccaaguuccacuggagggaccgagg	chr2:131907320-131907627(+)$1	307	275	301	11.2069
ACUGGCUCACCACAUAGUGUGCUUUG	chr6:43304381-43304690(-)$1	309	96	122	13.7777
CUGAAAAUGGAGAAAACCAGAGUUAG	chr22:36622697-36622959(-)$1	262	174	200	13.6584
AAAGGAAUACAUAAAGGAAUUCUUUA	chr6:2785886-2786215(+)$1	329	262	288	11.5410
GUAGGAAAAGAUGUAUGUUGCUAUCC	chr5:112214109-112214436(-)$1	327	195	221	10.9286

#DB
(((((.(((.(...).))).))))))	chr12:123997759-123998014(-)$1	1	183	209	10.3720
(..(((((((......)))))))..)	chr16:24836696-24836982(+)$1	1	109	135	13.2572
(.((((((((......))).))))).	chr6:64293190-64293460(+)$1	1	160	186	13.4283
.(((((((.(......).))))))).	chr1:52497563-52497879(-)$1	1	210	236	13.3700
(((((...((......))....))))	chr5:95222833-95223116(-)$1	1	86	112	12.4241
(((((..(((......)))..)))))	chr20:34238083-34238333(-)$1	1	184	210	15.3426
(((((.((((......)))).)))))	chr13:76432715-76432999(+)$1	1	66	92	12.3976
((((.((((......)))).))))))	chrX:150156300-150156560(+)$1	1	143	169	11.1045
(((((((((((....)))))))))))	chr10:133781687-133781959(-)$1	1	159	185	9.5691
(((((.((((......)))).)))))	chr2:55462649-55462903(+)$1	1	4	30	12.3976
((..(..(((......)))..)..))	chr15:25223630-25223931(+)$1	1	155	181	14.6207
((((((((((......))).......	chr19:42375392-42375661(+)$1	1	98	124	13.1624
.(((((((((......)))).)))))	chr2:11320727-11320995(-)$1	1	122	148	12.0940
.(((((.(((......))).))))).	chr12:56989529-56989804(-)$1	1	146	172	11.8658
((.(((((((......))))))).).	chr9:19376080-19376343(-)$1	1	40	66	11.4754
((((((.(((......)))..)))))	chr4:159045555-159045837(-)$1	1	75	101	14.5080
((.((.((((......)))).))...	chr12:93801962-93802237(-)$1	1	24	50	12.3741
((((((((((......)))).))...	chr16:8943082-8943302(+)$1	1	52	78	11.8135
((((((((((......)))..)))))	chr6:26599277-26599533(+)$1	1	73	99	15.1063
(((.((((((......).))))).))	chr17:45761946-45762212(+)$1	1	82	108	11.7212
.((((..(((......)))....)))	chr6:3272984-3273287(+)$1	1	120	146	13.5458
(((....(((......)))......)	chr2:178087998-178088237(+)$1	1	169	195	11.8880
(((.((((((......))).))).))	chr10:70101934-70102219(+)$1	1	97	123	13.6807
...(((..((......))..)))...	chr5:112213993-112214272(-)$1	1	144	170	13.1083
..(((..(((......)))..)))..	chr14:39651602-39651842(+)$1	1	126	152	13.1748
(((((.(.(((.....))).).))))	chr22:38693555-38693851(-)$1	1	15	41	10.4515
(((..((((......))))..))..)	chr20:48521124-48521456(-)$1	1	171	197	10.8202
((..(((.(.(((...))).))))))	chr4:1950161-1950461(+)$1	1	9	35	9.2389
((.(..((((......))))))))))	chr3:172118384-172118644(+)$1	1	29	55	12.8791
....((.(((......))).))...)	chr13:79888520-79888798(-)$1	1	211	237	13.3092
((((((((((......))))))..))	chr18:12985639-12985900(+)$1	1	35	61	11.1419
.(((((((((......))))))))).	chr12:123778907-123779165(-)$1	1	37	63	11.7861
((..(((.(......)))).))))))	chr3:137964426-137964768(+)$1	1	246	272	12.8329
((....((((......))))))))).	chr10:133769218-133769496(+)$1	1	177	203	12.6581
(.(((...((......))...)))))	chr2:3483239-3483534(+)$1	1	137	163	13.0464
(((.(((.(......)))).))))))	chr14:39819811-39820078(+)$1	1	176	202	12.6686
.(((.(.(((......))).))))..	chr20:31052641-31052903(-)$1	1	217	243	12.5458
(((..(((.(......).)))..)))	chr17:71244923-71245179(+)$1	1	169	195	12.8998
(((...((((......))))...)))	chr10:38117590-38117864(-)$1	1	134	160	13.5159
((.(((((((......))))))).))	chr4:140626678-140627011(+)$1	1	169	195	12.5703
((((((((((((...)))))))))))	chr12:111157532-111157805(-)$1	1	221	247	10.4187
((((((((((......))))))))))	chr8:22280091-22280394(+)$1	1	57	83	14.4065
((((((.(((......))).))))))	chr3:137965465-137965729(+)$1	1	115	141	13.5527
((((.(((((......))))).))))	chr3:42689923-42690211(+)$1	1	207	233	11.8703
((.(((..((......))..))).))	chr12:133636088-133636388(+)$1	1	63	89	12.8298
...(((.(((......))).))))))	chr16:84497366-84497677(-)$1	1	19	45	14.2537
((.(((((.(......))))))...)	chr20:31026112-31026380(+)$1	1	29	55	12.3709
(((..(((((......)))))..)))	chr19:17974029-17974382(+)$1	1	25	51	12.0994
(((....(((.....)))....))))	chr14:89696876-89697186(-)$1	1	184	210	9.5087
(....(((((......)))))...))	chr10:120440866-120441130(-)$1	1	152	178	13.0277
.((..(((((......)))))...))	chr2:131907320-131907627(+)$1	1	275	301	11.2069
...(((.(((......))).)))..)	chr6:43304381-43304690(-)$1	1	96	122	13.7777
((((...(((......)))...))))	chr22:36622697-36622959(-)$1	1	174	200	13.6584
.(((((((.(......).))))))).	chr6:2785886-2786215(+)$1	1	262	288	11.5410
((((.((.(......).)).))))))	chr5:112214109-112214436(-)$1	1	195	221	10.9286

#PSSM
e : 0.18	f : 0.16	= : 0.10	c : 0.09	: : 0.07	g : 0.05	i : 0.05	d : 0.05	[ : 0.03	" : 0.03	$ : 0.03	b : 0.03	! : 0.01	C : 0.01	% : 0.01	# : 0.01	
f : 0.16	e : 0.16	= : 0.10	g : 0.09	c : 0.09	d : 0.07	b : 0.07	i : 0.05	[ : 0.03	" : 0.03	$ : 0.03	# : 0.03	! : 0.01	a : 0.01	
e : 0.14	f : 0.14	= : 0.10	[ : 0.10	c : 0.09	g : 0.07	! : 0.07	d : 0.07	# : 0.05	i : 0.03	b : 0.03	$ : 0.03	" : 0.01	
g : 0.12	e : 0.12	! : 0.12	c : 0.12	f : 0.10	= : 0.10	# : 0.07	[ : 0.05	i : 0.03	d : 0.03	b : 0.01	a : 0.01	$ : 0.01	" : 0.01	
c : 0.18	g : 0.12	= : 0.10	e : 0.09	f : 0.09	! : 0.09	[ : 0.07	# : 0.07	b : 0.05	i : 0.03	" : 0.03	a : 0.01	d : 0.01	
e : 0.16	c : 0.16	g : 0.10	[ : 0.09	! : 0.09	" : 0.07	= : 0.07	b : 0.05	# : 0.05	d : 0.03	i : 0.03	f : 0.03	a : 0.01	
d : 0.18	e : 0.12	[ : 0.12	c : 0.10	! : 0.10	g : 0.09	= : 0.07	" : 0.05	i : 0.03	# : 0.03	a : 0.01	f : 0.01	b : 0.01	
c : 0.36	d : 0.18	e : 0.10	g : 0.09	[ : 0.09	= : 0.05	" : 0.03	! : 0.03	f : 0.01	i : 0.01	
c : 0.36	d : 0.18	e : 0.09	[ : 0.07	b : 0.07	a : 0.07	g : 0.05	= : 0.05	f : 0.01	i : 0.01	
c : 0.34	d : 0.14	a : 0.09	o : 0.09	b : 0.07	e : 0.07	g : 0.05	= : 0.05	[ : 0.03	f : 0.01	i : 0.01	
o : 0.89	= : 0.03	c : 0.03	a : 0.01	n : 0.01	
o : 0.89	n : 0.03	l : 0.01	m : 0.01	c : 0.01	= : 0.01	
o : 0.89	l : 0.03	n : 0.03	m : 0.01	c : 0.01	
o : 0.89	l : 0.05	n : 0.03	m : 0.01	
o : 0.89	n : 0.03	l : 0.03	a : 0.01	m : 0.01	
o : 0.80	a : 0.05	d : 0.03	= : 0.03	] : 0.01	n : 0.01	l : 0.01	c : 0.01	
c : 0.41	d : 0.18	a : 0.09	b : 0.07	e : 0.07	g : 0.05	= : 0.05	f : 0.01	i : 0.01	] : 0.01	
c : 0.41	d : 0.18	b : 0.09	e : 0.09	] : 0.07	g : 0.05	= : 0.05	f : 0.01	i : 0.01	
c : 0.41	d : 0.18	e : 0.10	g : 0.09	= : 0.05	4 : 0.03	2 : 0.03	f : 0.01	i : 0.01	3 : 0.01	b : 0.01	
] : 0.27	2 : 0.14	d : 0.14	e : 0.10	g : 0.09	4 : 0.05	= : 0.05	3 : 0.03	> : 0.01	6 : 0.01	f : 0.01	i : 0.01	c : 0.01	
e : 0.18	c : 0.12	g : 0.10	2 : 0.10	] : 0.09	a : 0.07	f : 0.07	4 : 0.05	= : 0.05	3 : 0.05	> : 0.01	6 : 0.01	b : 0.01	i : 0.01	
c : 0.18	g : 0.12	e : 0.12	f : 0.12	= : 0.09	b : 0.07	3 : 0.07	4 : 0.05	] : 0.03	2 : 0.03	a : 0.01	> : 0.01	6 : 0.01	i : 0.01	
c : 0.18	f : 0.14	g : 0.12	e : 0.12	= : 0.10	3 : 0.09	2 : 0.07	b : 0.05	> : 0.01	4 : 0.01	6 : 0.01	i : 0.01	d : 0.01	
f : 0.16	e : 0.12	= : 0.10	c : 0.10	2 : 0.09	] : 0.09	3 : 0.09	g : 0.07	d : 0.05	4 : 0.03	> : 0.01	6 : 0.01	i : 0.01	
e : 0.18	f : 0.16	= : 0.10	g : 0.09	d : 0.09	2 : 0.05	3 : 0.05	i : 0.05	4 : 0.03	5 : 0.03	c : 0.03	b : 0.03	> : 0.01	a : 0.01	6 : 0.01	
f : 0.16	e : 0.14	= : 0.10	d : 0.10	c : 0.09	: : 0.07	g : 0.05	] : 0.05	b : 0.05	4 : 0.03	5 : 0.03	i : 0.03	> : 0.01	3 : 0.01	

#score	685.6208458323871
#seq	55
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_transcript_m3_run2.txt

#BEAR
:::DDDDYYFFFFFFBBB	chr17:80049218-80049476(-)$1	258	104	122	9.3052
}EEEEE}HHHHHHHH}DD	chr20:17943380-17943592(-)$1	212	163	181	8.5374
FFFFFFZZZGGGGGGG}B	chr11:5289614-5289894(-)$1	280	231	249	9.0299
:::CCC}A}FFFFFF}GG	chr1:109643002-109643220(+)$1	218	124	142	8.8663
DEEEEEZZZFFFFFFCCC	chr17:39845042-39845364(+)$1	322	297	315	12.0750
EEYYBBZZZEEEEE}GGG	chr1:156721254-156721539(-)$1	285	117	135	9.5487
A}DDDD}A}FFFFFF}EE	chr16:88870214-88870492(+)$1	278	250	268	11.2572
:EEEEEZZZBB}BBYYBB	chr6:53213554-53213819(-)$1	265	201	219	9.5692
DEEEEEYYJJJJJJJJJJ	chr20:37058211-37058547(-)$1	336	307	325	8.7222
DDDD~~~~EEEEEEEEEE	chr19:49468554-49468819(+)$1	265	152	170	9.3743
D}ACCCZZZGGGGGGG}B	chr2:97543590-97543873(-)$1	283	151	169	9.0946
:EEEEEYYGGGGGGG}BB	chr16:30081117-30081420(+)$1	303	229	247	9.0707
EEEEEBBYYIIIIIIIII	chr20:62152052-62152310(+)$1	258	201	219	10.1683
FFFFFF}BBYYFFFFFF:	chr19:3983012-3983303(-)$1	291	272	290	8.8640
BYYCCCBB}FFFFFFYYC	chr19:47290842-47291155(-)$1	313	108	126	10.9950
CYYCCC~~~~EEEEEDDD	chr19:24187198-24187410(-)$1	212	159	177	8.9205
DD}A?????FFFFFF}BB	chr11:811580-811894(+)$1	314	216	234	8.9287
:EEEEE}CCC}DDDD}CC	chr8:101733713-101733973(-)$1	260	143	161	7.8421
YYDDDD~~~~EEEEEDDD	chr7:75932086-75932314(+)$1	228	205	223	9.3446
EEEEE}BB}IIIIIIIII	chr16:30080829-30081092(+)$1	263	233	251	10.2884
:::DDDDYYFFFFFFBBH	chr8:146015122-146015411(-)$1	289	252	270	8.9769
BBYYBBZZZFFFFFF}DD	chr16:58231517-58231871(-)$1	354	278	296	11.5626
GYYBBZZZBB}FFFFFFF	chr2:70314566-70314898(+)$1	332	175	193	9.7627
YEEEEEAEEEEE~~~~CC	chr12:6875608-6875935(+)$1	327	249	267	7.9935
BBEEEEE}IIIIIIIIIZ	chr16:30078495-30078788(+)$1	293	226	244	8.8091
EEEEEEBB}FFFFFFDDD	chr1:26798903-26799202(+)$1	299	240	258	11.5377
DDDD}EEEEEEEEEEBB:	chr7:6523601-6523898(-)$1	297	172	190	7.8700
DDDDDDBB}HHHHHHHHY	chr5:70883206-70883427(+)$1	221	184	202	8.9019
CC}EEEEE}FFFFFF::E	chr1:32403543-32403846(-)$1	303	154	172	9.7163
EEEEEAYYAYYCCC}CCC	chr7:5568726-5568985(-)$1	259	240	258	8.5770
:DDDD}BB}GGGGGGG}A	chr6:37137955-37138229(+)$1	274	220	238	8.8211
}FFFFFF}FFFFFFEEEE	chr12:6619296-6619603(+)$1	307	219	237	8.8521
EEEEEYYBBYYEEEEE}E	chr2:55276993-55277273(-)$1	280	254	272	10.0897
BB}DDDDYYGGGGGGG}F	chr1:156721115-156721397(-)$1	282	128	146	8.4398
}DDDD~~~~FFFFFF~~~	chr19:3984113-3984437(-)$1	324	296	314	10.9849
FFFFFF}A}FFFFFFYYB	chr8:101733773-101734042(-)$1	269	249	267	10.5423
:::CCC}A}FFFFFF}GG	chr1:109643020-109643250(+)$1	230	106	124	8.8663
D}DDDDZZZBB}BB}DDD	chr19:49611208-49611487(+)$1	279	227	245	8.6966
EEEEE}BB}EEEEE}BBC	chrX:152953540-152953801(+)$1	261	218	236	10.6215
:::CCC}A}FFFFFF}GG	chr1:109642970-109643202(+)$1	232	156	174	8.8663
EEEEYYBB}JJJJJJJJJ	chr16:88870116-88870414(+)$1	298	277	295	9.4742
DDDD~~~~HHHHHHHH::	chr1:8925282-8925572(-)$1	290	156	174	7.9391
::DDDDZZZBB}EEEEEB	chr6:34212609-34212864(+)$1	255	125	143	8.8666
EEEEYYA}BB}EEEEE}A	chr2:55276878-55277193(-)$1	315	153	171	10.1166
BBFFFFFFFFFFFF}BB}	chr16:204265-204551(+)$1	286	262	280	8.4562
EEEEDDDD}FFFFFF}CC	chr2:97541639-97542011(-)$1	372	290	308	10.8658
??EEEEEYYFFFFFFAYY	chr22:21272027-21272359(+)$1	332	297	315	10.4505
FCCCYYBB}HHHHHHHHY	chrX:152953601-152953886(+)$1	285	240	258	8.7422
DDDEEEEE}FFFFFF}DD	chr11:2398561-2398877(+)$1	316	296	314	10.8444
EEE}BBBBYYEEEEECCC	chr2:234197329-234197609(+)$1	280	222	240	9.3149
EEEEE}BB}FFFFFFYYA	chr6:37787506-37787819(+)$1	313	273	291	11.9801
EEEEYYA}BBYYFFFFFF	chr11:5290714-5290989(-)$1	275	235	253	10.1400
DYYDDDD}BBFFFFFF::	chr16:30079896-30080121(+)$1	225	206	224	9.2837
A}DDDD}A}IIIIIIIII	chr11:61734777-61735183(-)$1	406	227	245	9.4830
::BBYYBB}FFFFFF::d	chr1:35658199-35658561(-)$1	362	232	250	8.3447
CCC}BBZZZFFFFFF:dd	chr22:50037985-50038300(-)$1	315	282	300	8.4603
CC}DDDD}FFFFFF}CCC	chr9:100745555-100745887(+)$1	332	158	176	9.2657
}FFFFFFYYFFFFFF}BB	chr19:1241671-1242017(+)$1	346	146	164	10.3750
YYDDDDZZZDDDD}HHHH	chr11:5274382-5274724(-)$1	342	187	205	8.6999

#otherMatches

#Seq PSSM
CAACACGCAGCCGCCCCC	chr17:80049218-80049476(-)$1	258	104	122	9.3052
UAAGAAUGGUUGGUGUCA	chr20:17943380-17943592(-)$1	212	163	181	8.5374
GACACCCUCCUUCUGCAC	chr11:5289614-5289894(-)$1	280	231	249	9.0299
UCCCGGAGCUGGCCCUGC	chr1:109643002-109643220(+)$1	218	124	142	8.8663
CGCGGGCCCGGGUGGGGC	chr17:39845042-39845364(+)$1	322	297	315	12.0750
UUGCCCCGAUccgcgccc	chr1:156721254-156721539(-)$1	285	117	135	9.5487
GAGGUGAGGGGCGUGGGG	chr16:88870214-88870492(+)$1	278	250	268	11.2572
AAAGGUAAAGCCGUCAGC	chr6:53213554-53213819(-)$1	265	201	219	9.5692
CCCUGGCCCAGGGCAGUU	chr20:37058211-37058547(-)$1	336	307	325	8.7222
CUGCUUCUGGGACCUGCC	chr19:49468554-49468819(+)$1	265	152	170	9.3743
GAGAGCCCCCAGGCCAUG	chr2:97543590-97543873(-)$1	283	151	169	9.0946
CCUGGUAAGGAUAGGCAG	chr16:30081117-30081420(+)$1	303	229	247	9.0707
GGCGCCGCGCGCGGGUGG	chr20:62152052-62152310(+)$1	258	201	219	10.1683
CCCCCGUGUCCCCAGGCG	chr19:3983012-3983303(-)$1	291	272	290	8.8640
UGGUGGCCGUGGUGGCCG	chr19:47290842-47291155(-)$1	313	108	126	10.9950
GAAUUAAUGUGAGUUGCA	chr19:24187198-24187410(-)$1	212	159	177	8.9205
GGGCACUUCUAGACACUC	chr11:811580-811894(+)$1	314	216	234	8.9287
UGCGGGCAGCCGUGCCGA	chr8:101733713-101733973(-)$1	260	143	161	7.8421
UCCGGCACACUGCGGACC	chr7:75932086-75932314(+)$1	228	205	223	9.3446
GACGGAUUUCCAUGGCAA	chr16:30080829-30081092(+)$1	263	233	251	10.2884
AUGCCACCUGGCUGUGCC	chr8:146015122-146015411(-)$1	289	252	270	8.9769
GAACAGUCUGAGGAGCCG	chr16:58231517-58231871(-)$1	354	278	296	11.5626
UCCCGCUCGCUCCCGCGG	chr2:70314566-70314898(+)$1	332	175	193	9.7627
ccggccccggcACCAUGU	chr12:6875608-6875935(+)$1	327	249	267	7.9935
GGGUUGGGAGUGGCAGGC	chr16:30078495-30078788(+)$1	293	226	244	8.8091
CCGGgccaccacugccgc	chr1:26798903-26799202(+)$1	299	240	258	11.5377
gccgccgcgcugcgccga	chr7:6523601-6523898(-)$1	297	172	190	7.8700
GCGCCCCGGUGGCCUGGC	chr5:70883206-70883427(+)$1	221	184	202	8.9019
ccaccgcuaccgccgccg	chr1:32403543-32403846(-)$1	303	154	172	9.7163
GCCUCCCGGAGCUGCGCC	chr7:5568726-5568985(-)$1	259	240	258	8.5770
AGUUGUCCUCCGACUCGC	chr6:37137955-37138229(+)$1	274	220	238	8.8211
CAACAAGAACUUUUUCCU	chr12:6619296-6619603(+)$1	307	219	237	8.8521
CCGGCCCGGCCUCCCCCU	chr2:55276993-55277273(-)$1	280	254	272	10.0897
UCGCGCUUcccggcccgg	chr1:156721115-156721397(-)$1	282	128	146	8.4398
AAGUCAACGUGAGCUCCC	chr19:3984113-3984437(-)$1	324	296	314	10.9849
AGCUACCCCAUGGCCUCG	chr8:101733773-101734042(-)$1	269	249	267	10.5423
UCCCGGAGCUGGCCCUGC	chr1:109643020-109643250(+)$1	230	106	124	8.8663
ugaccgggagcgacggcg	chr19:49611208-49611487(+)$1	279	227	245	8.6966
cccgccgccgccCGCGCG	chrX:152953540-152953801(+)$1	261	218	236	10.6215
UCCCGGAGCUGGCCCUGC	chr1:109642970-109643202(+)$1	232	156	174	8.8663
gcccgcccgccgcccccg	chr16:88870116-88870414(+)$1	298	277	295	9.4742
GAUGACCCCAGCAGGUAC	chr1:8925282-8925572(-)$1	290	156	174	7.9391
ccgcccccaccccuuccc	chr6:34212609-34212864(+)$1	255	125	143	8.8666
CUCCCUGAGGACGACGAG	chr2:55276878-55277193(-)$1	315	153	171	10.1166
CCGUGGGCGGCGGGCGCU	chr16:204265-204551(+)$1	286	262	280	8.4562
CUCUGGUUUCCCUGGGCC	chr2:97541639-97542011(-)$1	372	290	308	10.8658
AUGUUCCUCGUCCGCGAU	chr22:21272027-21272359(+)$1	332	297	315	10.4505
UGACUGCGccgcccgcgc	chrX:152953601-152953886(+)$1	285	240	258	8.7422
CCGGGGGCCGGGGCGGGA	chr11:2398561-2398877(+)$1	316	296	314	10.8444
CUGUGGCUAUGAUCUGCC	chr2:234197329-234197609(+)$1	280	222	240	9.3149
GCGGCUUCUGGGGGUAAG	chr6:37787506-37787819(+)$1	313	273	291	11.9801
UCAAGCCCGCCUUUGCUA	chr11:5290714-5290989(-)$1	275	235	253	10.1400
UCCCCACCGUGCUCUGAC	chr16:30079896-30080121(+)$1	225	206	224	9.2837
ccgccgcuccagcgccgc	chr11:61734777-61735183(-)$1	406	227	245	9.4830
AAGCCCGUCGUUGCUCAG	chr1:35658199-35658561(-)$1	362	232	250	8.3447
GGACUGCCCAUGAUGAGG	chr22:50037985-50038300(-)$1	315	282	300	8.4603
CGCGCCGCCGGCCUCCGC	chr9:100745555-100745887(+)$1	332	158	176	9.2657
cagcuacccgcuuccugc	chr19:1241671-1242017(+)$1	346	146	164	10.3750
GGCCAGUGCCCUGUCCUC	chr11:5274382-5274724(-)$1	342	187	205	8.6999

#DB
...))))..)))))))))	chr17:80049218-80049476(-)$1	1	104	122	9.3052
.))))).)))))))).))	chr20:17943380-17943592(-)$1	1	163	181	8.5374
))))))...))))))).)	chr11:5289614-5289894(-)$1	1	231	249	9.0299
...))).).)))))).))	chr1:109643002-109643220(+)$1	1	124	142	8.8663
))))))...)))))))))	chr17:39845042-39845364(+)$1	1	297	315	12.0750
))..))...))))).)))	chr1:156721254-156721539(-)$1	1	117	135	9.5487
).)))).).)))))).))	chr16:88870214-88870492(+)$1	1	250	268	11.2572
.)))))...)).))..))	chr6:53213554-53213819(-)$1	1	201	219	9.5692
))))))..))))))))))	chr20:37058211-37058547(-)$1	1	307	325	8.7222
))))....)))))(((((	chr19:49468554-49468819(+)$1	1	152	170	9.3743
).))))...))))))).)	chr2:97543590-97543873(-)$1	1	151	169	9.0946
.)))))..))))))).))	chr16:30081117-30081420(+)$1	1	229	247	9.0707
)))))))..)))))))))	chr20:62152052-62152310(+)$1	1	201	219	10.1683
)))))).))..)))))).	chr19:3983012-3983303(-)$1	1	272	290	8.8640
)..))))).))))))..)	chr19:47290842-47291155(-)$1	1	108	126	10.9950
)..)))....))))))))	chr19:24187198-24187410(-)$1	1	159	177	8.9205
)).).....)))))).))	chr11:811580-811894(+)$1	1	216	234	8.9287
.))))).))).)))).))	chr8:101733713-101733973(-)$1	1	143	161	7.8421
..))))....))))))))	chr7:75932086-75932314(+)$1	1	205	223	9.3446
))))).)).)))))))))	chr16:30080829-30081092(+)$1	1	233	251	10.2884
...))))..)))))))))	chr8:146015122-146015411(-)$1	1	252	270	8.9769
))..))...)))))).))	chr16:58231517-58231871(-)$1	1	278	296	11.5626
)..))...)).)))))))	chr2:70314566-70314898(+)$1	1	175	193	9.7627
.)))))))))))....))	chr12:6875608-6875935(+)$1	1	249	267	7.9935
))))))).))))))))).	chr16:30078495-30078788(+)$1	1	226	244	8.8091
)))))))).)))))))))	chr1:26798903-26799202(+)$1	1	240	258	11.5377
)))).)))))))))))).	chr7:6523601-6523898(-)$1	1	172	190	7.8700
)))))))).)))))))).	chr5:70883206-70883427(+)$1	1	184	202	8.9019
)).))))).))))))..(	chr1:32403543-32403846(-)$1	1	154	172	9.7163
))))))..)..))).)))	chr7:5568726-5568985(-)$1	1	240	258	8.5770
.)))).)).))))))).)	chr6:37137955-37138229(+)$1	1	220	238	8.8211
.)))))).))))))))))	chr12:6619296-6619603(+)$1	1	219	237	8.8521
)))))..))..))))).)	chr2:55276993-55277273(-)$1	1	254	272	10.0897
)).))))..))))))).)	chr1:156721115-156721397(-)$1	1	128	146	8.4398
.))))....))))))...	chr19:3984113-3984437(-)$1	1	296	314	10.9849
)))))).).))))))..)	chr8:101733773-101734042(-)$1	1	249	267	10.5423
...))).).)))))).))	chr1:109643020-109643250(+)$1	1	106	124	8.8663
).))))...)).)).)))	chr19:49611208-49611487(+)$1	1	227	245	8.6966
))))).)).))))).)))	chrX:152953540-152953801(+)$1	1	218	236	10.6215
...))).).)))))).))	chr1:109642970-109643202(+)$1	1	156	174	8.8663
))))..)).)))))))))	chr16:88870116-88870414(+)$1	1	277	295	9.4742
))))....))))))))..	chr1:8925282-8925572(-)$1	1	156	174	7.9391
..))))...)).))))))	chr6:34212609-34212864(+)$1	1	125	143	8.8666
))))..).)).))))).)	chr2:55276878-55277193(-)$1	1	153	171	10.1166
)))))))))))))).)).	chr16:204265-204551(+)$1	1	262	280	8.4562
)))))))).)))))).))	chr2:97541639-97542011(-)$1	1	290	308	10.8658
..)))))..)))))))..	chr22:21272027-21272359(+)$1	1	297	315	10.4505
))))..)).)))))))).	chrX:152953601-152953886(+)$1	1	240	258	8.7422
)))))))).)))))).))	chr11:2398561-2398877(+)$1	1	296	314	10.8444
))).))))..))))))))	chr2:234197329-234197609(+)$1	1	222	240	9.3149
))))).)).))))))..)	chr6:37787506-37787819(+)$1	1	273	291	11.9801
))))..).))..))))))	chr11:5290714-5290989(-)$1	1	235	253	10.1400
)..)))).))))))))..	chr16:30079896-30080121(+)$1	1	206	224	9.2837
).)))).).)))))))))	chr11:61734777-61735183(-)$1	1	227	245	9.4830
..))..)).))))))..(	chr1:35658199-35658561(-)$1	1	232	250	8.3447
))).))...)))))).((	chr22:50037985-50038300(-)$1	1	282	300	8.4603
)).)))).)))))).)))	chr9:100745555-100745887(+)$1	1	158	176	9.2657
.))))))..)))))).))	chr19:1241671-1242017(+)$1	1	146	164	10.3750
..))))...)))).))))	chr11:5274382-5274724(-)$1	1	187	205	8.6999

#PSSM
E : 0.22	: : 0.18	D : 0.18	B : 0.08	} : 0.06	F : 0.06	C : 0.06	Y : 0.05	A : 0.03	G : 0.01	? : 0.01	
E : 0.33	D : 0.13	: : 0.11	Y : 0.10	F : 0.08	} : 0.06	B : 0.06	C : 0.06	? : 0.01	
E : 0.35	D : 0.22	F : 0.10	Y : 0.10	: : 0.08	} : 0.06	C : 0.03	A : 0.01	B : 0.01	
E : 0.37	D : 0.28	C : 0.11	F : 0.10	Y : 0.03	B : 0.03	} : 0.03	A : 0.01	
E : 0.30	D : 0.25	F : 0.10	C : 0.10	B : 0.08	Y : 0.08	~ : 0.03	? : 0.01	} : 0.01	
D : 0.22	E : 0.22	F : 0.10	C : 0.10	Y : 0.10	B : 0.08	} : 0.06	~ : 0.05	? : 0.01	Z : 0.01	A : 0.01	
B : 0.20	Z : 0.18	} : 0.15	D : 0.10	~ : 0.08	E : 0.08	Y : 0.06	A : 0.05	F : 0.05	? : 0.01	
B : 0.22	Z : 0.18	Y : 0.15	A : 0.10	} : 0.10	~ : 0.08	E : 0.06	H : 0.01	? : 0.01	C : 0.01	F : 0.01	D : 0.01	
} : 0.32	Z : 0.16	Y : 0.11	B : 0.10	E : 0.05	~ : 0.05	F : 0.05	H : 0.03	J : 0.01	G : 0.01	? : 0.01	C : 0.01	I : 0.01	A : 0.01	
F : 0.40	B : 0.11	G : 0.08	E : 0.08	H : 0.06	I : 0.06	Y : 0.06	J : 0.03	~ : 0.03	C : 0.01	D : 0.01	
F : 0.42	E : 0.13	G : 0.08	H : 0.06	I : 0.06	Y : 0.06	B : 0.05	} : 0.05	J : 0.03	D : 0.01	
F : 0.45	E : 0.16	G : 0.08	H : 0.06	I : 0.06	} : 0.05	J : 0.03	D : 0.03	C : 0.01	Y : 0.01	
F : 0.47	E : 0.16	G : 0.08	H : 0.06	I : 0.06	B : 0.03	J : 0.03	D : 0.03	~ : 0.01	C : 0.01	
F : 0.47	E : 0.16	G : 0.08	H : 0.06	I : 0.06	B : 0.03	J : 0.03	D : 0.01	~ : 0.01	C : 0.01	} : 0.01	
F : 0.42	E : 0.15	} : 0.10	H : 0.08	G : 0.08	I : 0.06	J : 0.03	Y : 0.01	D : 0.01	~ : 0.01	
} : 0.20	B : 0.08	G : 0.08	E : 0.08	C : 0.06	Y : 0.06	I : 0.06	F : 0.06	D : 0.06	H : 0.06	: : 0.05	J : 0.03	~ : 0.03	A : 0.01	
B : 0.15	D : 0.11	C : 0.11	} : 0.10	G : 0.06	E : 0.06	I : 0.06	Y : 0.06	: : 0.06	F : 0.05	H : 0.05	J : 0.03	~ : 0.01	d : 0.01	
B : 0.15	C : 0.15	D : 0.11	E : 0.08	G : 0.06	: : 0.06	I : 0.05	F : 0.05	Y : 0.05	A : 0.05	J : 0.03	H : 0.03	d : 0.03	Z : 0.01	~ : 0.01	} : 0.01	

#score	559.3966565468322
#seq	59
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_UTR_m2_run2.txt

#BEAR
!!ffffffbboooooobb]ffffff]e	chr7:151860656-151860916(-)$1	260	33	60	12.1848
b[a!!bbcccooooooccc]bb22abb	chr6:56424992-56425203(-)$1	211	57	84	12.5253
iiiiii[cccooooooccciiiiiiii	chr8:124340641-124340920(-)$1	279	56	83	14.7480
:eeeee[cccooooooccc]eeeee:F	chr8:17507254-17507569(-)$1	315	243	270	13.1337
###gggggggoooooogggggggccce	chr17:62498471-62498724(-)$1	253	49	76	12.9644
[ffffff[bboooooobb]ffffffee	chr2:96950818-96951029(-)$1	211	152	179	12.0458
ggggggg[ccclllccc333ggggggg	chr5:70818099-70818417(+)$1	318	68	95	10.0278
!!eeeee"""ccclllccc]eeeee]c	chr2:61575317-61575556(-)$1	239	60	87	9.7660
d[ccc!!cccooooooccc22cccddd	chr11:34167614-34167941(+)$1	327	273	300	14.8133
ccc[bbddddoooooodddd]bb4444	chr2:153528890-153529239(-)$1	349	233	260	11.0309
ddd####cccooooooccc]ddddddd	chrX:41204361-41204653(+)$1	292	131	158	14.3676
eeee"""cccooooooccc333eeeee	chr9:116997801-116998032(+)$1	231	53	80	16.5162
[a[eeeee[aooooooa]eeeee]a]f	chr6:56373330-56373628(-)$1	298	166	193	12.3684
eeeee[ddddooooooddddeeeeegg	chr2:48030618-48030876(+)$1	258	226	253	12.6423
eee####cccooooooccc4444eeee	chr6:11190845-11191143(-)$1	298	47	74	15.7752
eeee"""cccooooooccc333eeeee	chr6:56394150-56394369(-)$1	219	123	150	16.5162
eeeeea[cccooooooccc]a]eeeee	chrX:48661228-48661495(+)$1	267	238	265	15.7647
==========oooooo==========3	chr16:8994898-8995173(-)$1	275	25	52	14.3296
eeeee"""cccmmmmccc333eeeee]	chr14:73572803-73573088(+)$1	285	18	45	11.2359
=========aooooooa]=========	chr9:117073284-117073495(+)$1	211	183	210	14.0866
:gggggggbboooooobb]gggggggF	chr2:232577052-232577260(+)$1	208	88	115	11.6851
eeeee!!cccooooooccc333eeeee	chr7:99634923-99635247(+)$1	324	130	157	16.4564
###a[ddddoooooodddd]a22dddd	chr2:96950127-96950416(-)$1	289	246	273	11.1150
ffffff[cccooooooccc]ffffff:	chr3:184040525-184040752(+)$1	227	17	44	12.9661
"dddd!!cccooooooccc22dddd22	chr9:96002088-96002358(+)$1	270	7	34	14.7002
eeeee!!cccooooooccc22eeeeec	chr2:61723950-61724214(-)$1	264	99	126	15.8966
cc[ccc!!bboooooobb22ccc333c	chr3:184017973-184018333(+)$1	360	249	276	13.4258
eeeeee[cccooooooccc]eeeee33	chr3:123366035-123366374(-)$1	339	281	308	15.7932
eee####cccnnnnnccc333eeeee7	chr12:26638937-26639147(-)$1	210	137	164	11.8841
ccc[bb[cccooooooccc]bbcccbb	chr17:27419831-27420106(-)$1	275	116	143	13.2426
ddd####cccnnnnnccc333dddd22	chr6:56341006-56341235(-)$1	229	145	172	11.1325
[bb[ddddbboooooobb22dddd]bb	chr6:56334889-56335177(-)$1	288	42	69	11.6148
ffffff!!bboooooobb22ffffff4	chr1:27106121-27106341(+)$1	220	145	172	12.7608
###affffffooooooffffff]a333	chr1:21226191-21226484(-)$1	293	186	213	11.9971
####eeeeeooooooeeeeebb]ccc]	chr6:101095052-101095298(-)$1	246	49	76	10.0646
d[a!!ddddoooooodddd22a]dddd	chr14:21853566-21853814(-)$1	248	16	43	11.4548
i[ccc"""bboooooobb333ccciii	chr16:11931790-11932071(-)$1	281	185	212	14.6178
[ggggggg[aooooooa]gggggggbb	chr14:102550986-102551319(-)$1	333	285	312	12.6588
[eeeeeddddoooooodddd]eeeee]	chr6:56323708-56324061(-)$1	353	10	37	12.9605
###ccc[ccclllcccccc333eeeee	chr6:56394674-56395026(-)$1	352	37	64	11.3830
eeeeea[cccooooooccc]a]eeeee	chr17:57737793-57738036(+)$1	243	103	130	15.7647
$$dddd!!bboooooobb22dddd444	chr1:93621755-93622064(-)$1	309	47	74	12.9740
ggg!!a[cccooooooccc]a22gggg	chr3:47155308-47155549(-)$1	241	164	191	15.0720
ggggggg[bboooooobb]ggggggg3	chr16:58559798-58560039(-)$1	241	182	209	13.3295
!!dddd[cccooooooccc]dddd]dd	chr19:14199876-14200260(-)$1	384	12	39	14.3558
eeee####cccnnnnnccc4444eeee	chr1:39775212-39775468(+)$1	256	62	89	11.3626
==========oooooo==========d	chr6:56338604-56338874(-)$1	270	238	265	14.0318
eeeeeeecccooooooccc333eeeee	chr21:40568498-40568772(-)$1	274	166	193	15.6914
ddd####cccnnnnnccc333dddd22	chr6:56340928-56341157(-)$1	229	67	94	11.1325
##eeeeecccooooooccc]eeeee33	chr14:56094532-56094784(+)$1	252	72	99	15.4936

#otherMatches

#Seq PSSM
AAUUGAUUGAAGAUUAUCGGAUCAAAC	chr7:151860656-151860916(-)$1	260	33	60	12.1848
GAGAACCCAGAUACUCCUGAGGCCCCC	chr6:56424992-56425203(-)$1	211	57	84	12.5253
AAUGGUUGAAUGUUCUUUCAUCAUUUU	chr8:124340641-124340920(-)$1	279	56	83	14.7480
CUUACAAAUGGGGUAAUAUGUGUGAAA	chr8:17507254-17507569(-)$1	315	243	270	13.1337
AUUAUUAGACUUAUUCGUCUAAUGGAA	chr17:62498471-62498724(-)$1	253	49	76	12.9644
AUUUCAUCUGUGAUUCCGUAUGAAGGC	chr2:96950818-96951029(-)$1	211	152	179	12.0458
UUCCAAAAGGCUAAGCCAAAUUUGGGA	chr5:70818099-70818417(+)$1	318	68	95	10.0278
AAGCCAGUCAGCUGGGAGCCCUGGCAG	chr2:61575317-61575556(-)$1	239	60	87	9.7660
AGCUCAACCUGGCUAAAGGCAGAGUCA	chr11:34167614-34167941(+)$1	327	273	300	14.8133
AUCAUGAGAAAAUGACUUCUACAACCA	chr2:153528890-153529239(-)$1	349	233	260	11.0309
UAGAAUAGUCGAACAAGAUACUAUGCC	chrX:41204361-41204653(+)$1	292	131	158	14.3676
CCUUCUUUGCUGGUGUGUACUUAGGGU	chr9:116997801-116998032(+)$1	231	53	80	16.5162
GGAGCUAGCAGAAAAGUUCUGGUGUGA	chr6:56373330-56373628(-)$1	298	166	193	12.3684
UGUUAUCAGAAAGUCAUUUGUGACAUU	chr2:48030618-48030876(+)$1	258	226	253	12.6423
GCAAACCCCCAGGAAAGGGAUGGUGUU	chr6:11190845-11191143(-)$1	298	47	74	15.7752
GGuauuuugauuuauuuuauuuuaucu	chr6:56394150-56394369(-)$1	219	123	150	16.5162
CCCUGGACAGUUCCCUCUGACUCAGGG	chrX:48661228-48661495(+)$1	267	238	265	15.7647
uuuAAGCAUUGUGCUGAGUGUUUGGAU	chr16:8994898-8995173(-)$1	275	25	52	14.3296
UUGGUAUCCCUUAAUAGGUUAAUCAAU	chr14:73572803-73573088(+)$1	285	18	45	11.2359
UUUUUCACCCGGGAAAGAGGUGAGAGG	chr9:117073284-117073495(+)$1	211	183	210	14.0866
GAUUCUCUCCAGGUGAGGAAGAGGAUG	chr2:232577052-232577260(+)$1	208	88	115	11.6851
GCAUAAAAGUGAAACUGCUAAAUAUGU	chr7:99634923-99635247(+)$1	324	130	157	16.4564
AAGCAGCGCAAGAACGUGCAGAACAUC	chr2:96950127-96950416(-)$1	289	246	273	11.1150
UGGCUUGAGUUUUCUUAUUAGGGCCAG	chr3:184040525-184040752(+)$1	227	17	44	12.9661
GGUGGAGCUCGCGGAGGAGGACCACGG	chr9:96002088-96002358(+)$1	270	7	34	14.7002
GUCUCUCUGAAGUGCCUCACUGAGAUU	chr2:61723950-61724214(-)$1	264	99	126	15.8966
GGAGAAUAAGGUAAAACUGUUUCAAAC	chr3:184017973-184018333(+)$1	360	249	276	13.4258
AACAUCGUCAUGGUCCUGGAGAUGUGA	chr3:123366035-123366374(-)$1	339	281	308	15.7932
UGAGAAUACAACCUAUGUUUAUCAGUA	chr12:26638937-26639147(-)$1	210	137	164	11.8841
GCGGCUGCGGAAGGACCUGAAGCGCAC	chr17:27419831-27420106(-)$1	275	116	143	13.2426
CUGGCUGGGCUUAUUGCCAAACAGGAA	chr6:56341006-56341235(-)$1	229	145	172	11.1325
AUGUCUUGAGAAAGAACUAACAAGUCA	chr6:56334889-56335177(-)$1	288	42	69	11.6148
CACAGUAAGGAUGAGACCCCACUGUGU	chr1:27106121-27106341(+)$1	220	145	172	12.7608
GAGCCAGUACGUAAUGGUGCUGAGAGU	chr1:21226191-21226484(-)$1	293	186	213	11.9971
AAUCUUAGUAAAGUCAUUGACAAGAGG	chr6:101095052-101095298(-)$1	246	49	76	10.0646
GACUCCAGUGAAGAUGCUGAUGACUGA	chr14:21853566-21853814(-)$1	248	16	43	11.4548
ccagcaucugagaccccaaaagcugca	chr16:11931790-11932071(-)$1	281	185	212	14.6178
AUCACUUGGCAGUGAAGGUGAGUGACU	chr14:102550986-102551319(-)$1	333	285	312	12.6588
CCCAGCCGACCAGGAAGUCGAGCUGGA	chr6:56323708-56324061(-)$1	353	10	37	12.9605
UUUUGUUGAAUAUUUCACACAUUCUUC	chr6:56394674-56395026(-)$1	352	37	64	11.3830
UUGCCCAGGGAAAUUACUCGGAGGCAG	chr17:57737793-57738036(+)$1	243	103	130	15.7647
ACAUGUUCUGCUUUGACAAUACAUUCA	chr1:93621755-93622064(-)$1	309	47	74	12.9740
GCUGCCAAAGACCUUCCUUCGUAAGUU	chr3:47155308-47155549(-)$1	241	164	191	15.0720
CCAUAUAAAGCACUUUCUAUGUAUGGU	chr16:58559798-58560039(-)$1	241	182	209	13.3295
CCGCCCGGACGCCACAGUCAGGGUCUG	chr19:14199876-14200260(-)$1	384	12	39	14.3558
UUGGCAUCAGCUGCAUGUUAACACCAA	chr1:39775212-39775468(+)$1	256	62	89	11.3626
AAUAAGGGAGCUAAUUUUCUUUUAUUU	chr6:56338604-56338874(-)$1	270	238	265	14.0318
GAUCGCAUCCUGAAUUGGAAAAUGUGA	chr21:40568498-40568772(-)$1	274	166	193	15.6914
CUGGCUGGGCUUAUUGCCAAACAGGAA	chr6:56340928-56341157(-)$1	229	67	94	11.1325
UUCUGCAUUGCUUUCUCAAUUGCAGUC	chr14:56094532-56094784(+)$1	252	72	99	15.4936

#DB
..((((((((......)).)))))).)	chr7:151860656-151860916(-)$1	1	33	60	12.1848
(.(..(((((......))).))..)))	chr6:56424992-56425203(-)$1	1	57	84	12.5253
((((((.(((......)))))))))))	chr8:124340641-124340920(-)$1	1	56	83	14.7480
.(((((.(((......))).))))).)	chr8:17507254-17507569(-)$1	1	243	270	13.1337
...(((((((......)))))))))))	chr17:62498471-62498724(-)$1	1	49	76	12.9644
.((((((.((......)).))))))))	chr2:96950818-96951029(-)$1	1	152	179	12.0458
(((((((.(((...)))...)))))))	chr5:70818099-70818417(+)$1	1	68	95	10.0278
..(((((...(((...))).))))).)	chr2:61575317-61575556(-)$1	1	60	87	9.7660
(.(((..(((......)))..))))))	chr11:34167614-34167941(+)$1	1	273	300	14.8133
(((.((((((......)))).))....	chr2:153528890-153529239(-)$1	1	233	260	11.0309
(((....(((......))).))))(((	chrX:41204361-41204653(+)$1	1	131	158	14.3676
((((...(((......)))...)))))	chr9:116997801-116998032(+)$1	1	53	80	16.5162
.(.(((((.(......).))))).).)	chr6:56373330-56373628(-)$1	1	166	193	12.3684
(((((.((((......)))))))))))	chr2:48030618-48030876(+)$1	1	226	253	12.6423
(((....(((......)))....))))	chr6:11190845-11191143(-)$1	1	47	74	15.7752
((((...(((......)))...)))))	chr6:56394150-56394369(-)$1	1	123	150	16.5162
((((((.(((......))).).)))))	chrX:48661228-48661495(+)$1	1	238	265	15.7647
((((((((((......)))))))))).	chr16:8994898-8995173(-)$1	1	25	52	14.3296
(((((...(((....)))...))))).	chr14:73572803-73573088(+)$1	1	18	45	11.2359
((((((((((......).)))))))))	chr9:117073284-117073495(+)$1	1	183	210	14.0866
.(((((((((......)).))))))))	chr2:232577052-232577260(+)$1	1	88	115	11.6851
(((((..(((......)))...)))))	chr7:99634923-99635247(+)$1	1	130	157	16.4564
...(.((((......)))).)..))))	chr2:96950127-96950416(-)$1	1	246	273	11.1150
((((((.(((......))).)))))).	chr3:184040525-184040752(+)$1	1	17	44	12.9661
.((((..(((......)))..))))..	chr9:96002088-96002358(+)$1	1	7	34	14.7002
(((((..(((......)))..)))))(	chr2:61723950-61724214(-)$1	1	99	126	15.8966
((.(((..((......))..)))...)	chr3:184017973-184018333(+)$1	1	249	276	13.4258
((((((.(((......))).)))))..	chr3:123366035-123366374(-)$1	1	281	308	15.7932
(((....(((.....)))...))))).	chr12:26638937-26639147(-)$1	1	137	164	11.8841
(((.((.(((......))).)))))))	chr17:27419831-27420106(-)$1	1	116	143	13.2426
(((....(((.....)))...))))..	chr6:56341006-56341235(-)$1	1	145	172	11.1325
.((.((((((......))..)))).))	chr6:56334889-56335177(-)$1	1	42	69	11.6148
((((((..((......))..)))))).	chr1:27106121-27106341(+)$1	1	145	172	12.7608
...(((((((......)))))).)...	chr1:21226191-21226484(-)$1	1	186	213	11.9971
....(((((......))))))).))).	chr6:101095052-101095298(-)$1	1	49	76	10.0646
(.(..((((......))))..).))))	chr14:21853566-21853814(-)$1	1	16	43	11.4548
(.(((...((......))...))))))	chr16:11931790-11932071(-)$1	1	185	212	14.6178
.(((((((.(......).)))))))))	chr14:102550986-102551319(-)$1	1	285	312	12.6588
.(((((((((......)))).))))).	chr6:56323708-56324061(-)$1	1	10	37	12.9605
...(((.(((...))))))...)))))	chr6:56394674-56395026(-)$1	1	37	64	11.3830
((((((.(((......))).).)))))	chr17:57737793-57738036(+)$1	1	103	130	15.7647
..((((..((......))..))))...	chr1:93621755-93622064(-)$1	1	47	74	12.9740
(((..(.(((......))).)..))))	chr3:47155308-47155549(-)$1	1	164	191	15.0720
(((((((.((......)).))))))).	chr16:58559798-58560039(-)$1	1	182	209	13.3295
..((((.(((......))).)))).))	chr19:14199876-14200260(-)$1	1	12	39	14.3558
((((....(((.....)))....))))	chr1:39775212-39775468(+)$1	1	62	89	11.3626
((((((((((......)))))))))))	chr6:56338604-56338874(-)$1	1	238	265	14.0318
((((((((((......)))...)))))	chr21:40568498-40568772(-)$1	1	166	193	15.6914
(((....(((.....)))...))))..	chr6:56340928-56341157(-)$1	1	67	94	11.1325
..((((((((......))).)))))..	chr14:56094532-56094784(+)$1	1	72	99	15.4936

#PSSM
e : 0.25	# : 0.12	[ : 0.10	d : 0.10	! : 0.06	g : 0.06	c : 0.06	= : 0.06	i : 0.04	: : 0.04	f : 0.04	b : 0.02	" : 0.02	$ : 0.02	
e : 0.30	# : 0.12	g : 0.10	[ : 0.08	d : 0.08	! : 0.06	f : 0.06	c : 0.06	= : 0.06	i : 0.02	a : 0.02	b : 0.02	$ : 0.02	
e : 0.34	d : 0.12	# : 0.10	g : 0.10	f : 0.08	c : 0.08	= : 0.06	a : 0.04	[ : 0.04	i : 0.02	b : 0.02	
e : 0.32	# : 0.12	g : 0.10	f : 0.08	c : 0.08	! : 0.06	[ : 0.06	= : 0.06	d : 0.06	a : 0.04	i : 0.02	
e : 0.27	# : 0.12	f : 0.10	g : 0.10	c : 0.08	d : 0.08	! : 0.06	= : 0.06	b : 0.04	" : 0.04	i : 0.02	[ : 0.02	
e : 0.16	# : 0.12	f : 0.10	g : 0.10	d : 0.10	! : 0.08	" : 0.08	b : 0.06	a : 0.06	= : 0.06	c : 0.04	i : 0.02	[ : 0.02	
[ : 0.19	! : 0.14	d : 0.12	# : 0.12	g : 0.10	e : 0.10	" : 0.08	f : 0.06	= : 0.06	b : 0.02	
c : 0.48	d : 0.12	g : 0.06	[ : 0.06	" : 0.06	= : 0.06	! : 0.06	f : 0.04	e : 0.04	# : 0.02	
c : 0.54	b : 0.18	d : 0.10	= : 0.06	[ : 0.04	g : 0.02	" : 0.02	f : 0.02	e : 0.02	
c : 0.54	b : 0.18	d : 0.06	a : 0.06	o : 0.06	= : 0.04	g : 0.02	" : 0.02	f : 0.02	
o : 0.84	c : 0.08	n : 0.06	l : 0.02	
o : 0.84	n : 0.08	l : 0.04	c : 0.02	m : 0.02	
o : 0.84	n : 0.08	l : 0.04	c : 0.02	m : 0.02	
o : 0.84	n : 0.08	l : 0.04	m : 0.02	c : 0.02	
o : 0.84	n : 0.08	c : 0.04	l : 0.02	m : 0.02	
o : 0.78	c : 0.12	d : 0.04	l : 0.02	e : 0.02	n : 0.02	
c : 0.56	b : 0.18	d : 0.10	a : 0.06	= : 0.04	g : 0.02	f : 0.02	e : 0.02	
c : 0.54	b : 0.18	d : 0.10	] : 0.06	= : 0.04	g : 0.02	3 : 0.02	f : 0.02	e : 0.02	
c : 0.46	3 : 0.12	d : 0.10	] : 0.08	2 : 0.08	= : 0.06	g : 0.04	e : 0.04	f : 0.02	
] : 0.25	3 : 0.21	2 : 0.16	g : 0.08	f : 0.06	d : 0.06	= : 0.06	e : 0.04	4 : 0.04	i : 0.02	
3 : 0.19	e : 0.12	f : 0.10	g : 0.10	2 : 0.08	d : 0.08	a : 0.08	b : 0.06	= : 0.06	] : 0.04	4 : 0.04	i : 0.02	c : 0.02	
e : 0.19	d : 0.14	f : 0.10	g : 0.10	3 : 0.10	b : 0.08	c : 0.06	= : 0.06	4 : 0.04	] : 0.04	2 : 0.04	i : 0.02	a : 0.02	
e : 0.34	d : 0.14	g : 0.10	f : 0.08	c : 0.08	2 : 0.06	= : 0.06	] : 0.06	4 : 0.04	i : 0.02	b : 0.02	
e : 0.36	d : 0.18	c : 0.10	g : 0.10	f : 0.08	= : 0.06	2 : 0.02	i : 0.02	4 : 0.02	] : 0.02	3 : 0.02	a : 0.02	
e : 0.36	d : 0.14	g : 0.10	f : 0.08	c : 0.06	= : 0.06	a : 0.04	i : 0.04	4 : 0.04	3 : 0.04	] : 0.04	
e : 0.27	g : 0.10	d : 0.10	b : 0.08	3 : 0.08	] : 0.06	= : 0.06	2 : 0.06	i : 0.04	c : 0.04	4 : 0.04	f : 0.04	: : 0.02	
e : 0.23	d : 0.12	3 : 0.10	b : 0.08	g : 0.06	c : 0.06	4 : 0.06	] : 0.06	2 : 0.06	i : 0.04	F : 0.04	f : 0.02	= : 0.02	: : 0.02	7 : 0.02	

#score	663.862839961666
#seq	50
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_transcript_m1_run2.txt

#BEAR
g!!eeeee[dddduuuuuuuuuuuudddd]eee	chr14:39501055-39501276(-)$1	221	148	181	23.7433
============^^^^^^^^^^^^^^^^^^^^^	chr6:32948784-32949016(+)$1	232	139	172	18.8195
:::ffffff[cccuuuuuuuuuuuuccc]ffff	chrX:108885660-108885932(-)$1	272	36	69	22.1021
cc[bb[eeeeeyyyyyyyyyyyyyyyyeeeee]	chr2:198284951-198285222(-)$1	271	208	241	23.7633
cc[ffffff[bbtttttttttttbb]ffffff]	chr6:119500504-119500743(-)$1	239	33	66	21.4482
eeeee[eeeeeyyyyyyyyyyyyyyyyeeeee2	chr6:24291049-24291291(-)$1	242	52	85	23.0043
dddiiiiiiiiivvvvvvvvvvvvviiiiiiii	chr8:121644513-121644771(-)$1	258	166	199	24.1245
"""dddd[ddddxxxxxxxxxxxxxxxdddddd	chr7:26230895-26231115(-)$1	220	121	154	19.8241
"""==========ttttttttttt=========	chr2:201814060-201814354(-)$1	294	32	65	23.2905
dd[ffffffyyyyyyyyyyyyyyyyffffff]d	chr20:43033958-43034171(+)$1	213	150	183	23.1761
ggggggg[ddddvvvvvvvvvvvvvdddd]ggg	chr1:25568843-25569124(-)$1	281	168	201	24.1848
cc[dddd!!ddddtttttttttttdddd22ddd	chr7:6501613-6501861(-)$1	248	204	237	20.8410
:eeeee"""dddduuuuuuuuuuuudddd22ee	chr10:88810191-88810440(-)$1	249	176	209	21.8360
gggggg[eeeeewwwwwwwwwwwwwweeeeegg	chr10:70742694-70742981(+)$1	287	174	207	23.9520
==========^^^^^^^^^^^^^^^^^^^^===	chr11:78239699-78239970(-)$1	271	76	109	19.6750
cc!!eeeee[bbxxxxxxxxxxxxxxxbb]eee	chr2:232577757-232578024(+)$1	267	107	140	20.4656
iiiiiiggggggguuuuuuuuuuuuggggggg4	chr15:45010036-45010285(+)$1	249	197	230	24.5873
i!!dddd[ccc^^^^^^^^^^^^^^^^^^ccc]	chr20:10619533-10619749(-)$1	216	59	92	18.8670
[ccc[ffffffwwwwwwwwwwwwwwffffff]c	chr8:17427683-17427947(+)$1	264	163	196	24.2489
cc"""ccc[ddddtttttttttttdddd333cc	chr1:70689726-70689970(+)$1	244	73	106	22.5425
fffffddddeeeeettttttttttteeeee333	chr2:242276811-242277092(+)$1	281	149	182	20.6909
ffffffffffffxxxxxxxxxxxxxxxffffff	chr20:47710746-47711014(+)$1	268	171	204	20.1578
ggggg:ffffffwwwwwwwwwwwwwwffffff:	chr16:2652996-2653250(+)$1	254	52	85	21.7845
eccc[ccc!!ccctttttttttttccc333ccc	chr8:57875227-57875472(-)$1	245	166	199	22.7575
[ffffff"""ddddtttttttttttdddd4444	chr2:272231-272477(+)$1	246	19	52	21.3152
[bb!!gggggggvvvvvvvvvvvvvggggggg2	chr21:34932015-34932264(+)$1	249	13	46	24.4886
eeedddd!!cccvvvvvvvvvvvvvccc22ddd	chr13:111555631-111555885(-)$1	254	148	181	22.9342
####hhhhhhhhvvvvvvvvvvvvvhhhhhhhh	chr1:70694149-70694405(+)$1	256	158	191	21.1887
cc[bb[gggggggtttttttttttggggggg]b	chrX:128626620-128626966(-)$1	346	76	109	21.8333
==========^^^^^^^^^^^^^^^^^^^^===	chr6:64290908-64291137(+)$1	229	139	172	19.6750
[a[ddddddddxxxxxxxxxxxxxxxdddd333	chr7:26238614-26238860(-)$1	246	194	227	20.7865
gg"""eeeeeyyyyyyyyyyyyyyyyeeeee33	chr14:31642560-31642816(-)$1	256	7	40	24.3505
bb[ddddccc[attttttttttta]ccc]dddd	chr12:54674533-54674755(+)$1	222	43	76	20.9960
d"""gggggggwwwwwwwwwwwwwwggggggg3	chr6:42630247-42630498(+)$1	251	18	51	25.2662
dd####ffffffvvvvvvvvvvvvvffffff55	chr11:65199594-65199848(+)$1	254	71	104	22.4689
:::::gggggggwwwwwwwwwwwwwwggggggg	chr2:21224416-21224639(-)$1	223	39	72	20.0347
bb[ffffff[cccxxxxxxxxxxxxxxxccc]f	chr16:28848291-28848567(+)$1	276	126	159	20.4343
"""ffffff^^^^^^^^^^^^^^^^^^^^ffff	chr12:6437907-6438200(-)$1	293	226	259	19.0008
####dddd!!a[bbtttttttttttbb22a22d	chr20:30738600-30738876(+)$1	276	179	212	20.5097
eeee####adddduuuuuuuuuuuudddd]a44	chr1:67886774-67887018(-)$1	244	70	103	23.2027
[a[ccc$$$$$bbuuuuuuuuuuuubb333ccc	chr1:43392309-43392513(-)$1	204	145	178	23.0564
"ccc[ffffffwwwwwwwwwwwwwwffffff]c	chr2:223789229-223789484(+)$1	255	130	163	24.2287
[ffffff[ddddvvvvvvvvvvvvvdddd]fff	chr18:3277856-3278131(+)$1	275	71	104	23.7672
fff"""ccc[awwwwwwwwwwwwwwa]ccc444	chr1:55530033-55530252(+)$1	219	106	139	24.6632
bb[ccc[ffffffuuuuuuuuuuuuffffff]c	chr19:18499785-18500052(+)$1	267	149	182	23.7745
============uuuuuuuuuuuu=========	chr1:109642857-109643060(+)$1	203	65	98	24.9785
fff"""ccc[awwwwwwwwwwwwwwa]ccc444	chr1:55530052-55530274(+)$1	222	87	120	24.6632
ddd[ffffffxxxxxxxxxxxxxxxffffffdd	chr11:65198251-65198470(+)$1	219	138	171	19.8728
cc[ffffff^^^^^^^^^^^^^^^^^^^^^^ff	chr17:7079007-7079263(-)$1	256	161	194	18.6432
ii[bb!!eeeeettttttttttteeeee22bb]	chr2:20449841-20450134(-)$1	293	98	131	20.2817
ddd[gggggggwwwwwwwwwwwwwwggggggg]	chr20:34326889-34327121(-)$1	232	34	67	24.4245
((iiiiiiiiiwwwwwwwwwwwwwwiiiiiiii	chr7:101468944-101469217(+)$1	273	221	254	23.5627
fffffa[bb[bbyyyyyyyyyyyyyyyybb]bb	chr14:76117400-76117669(-)$1	269	129	162	21.3840
bb####ccc[cccuuuuuuuuuuuuccc]ccc2	chr16:87866108-87866342(-)$1	234	188	221	24.7423
CCffffff[cccvvvvvvvvvvvvvccc]ffff	chr11:65194799-65195023(+)$1	224	182	215	22.5923
b::iiiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr11:65271976-65272203(+)$1	227	65	98	22.2289
bb"""eeeeexxxxxxxxxxxxxxxeeeee333	chr20:4680561-4680854(+)$1	293	122	155	21.1889
####eeeee[ddddtttttttttttdddd]eee	chr3:142742782-142743070(+)$1	288	103	136	21.5212
eeeeee[ddddyyyyyyyyyyyyyyyydddd]e	chr3:57557459-57557710(-)$1	251	94	127	22.7297
cc"""gggggggtttttttttttggggggg]cc	chrX:132669862-132670077(-)$1	215	171	204	21.8600
cc[ffffff[bbvvvvvvvvvvvvvbbffffff	chr2:21252588-21252838(-)$1	250	42	75	24.1297
ffffff[ddddwwwwwwwwwwwwwwdddd]fff	chr2:236420512-236420796(+)$1	284	38	71	23.4715
hhhhhhhcccbbvvvvvvvvvvvvvbb]ccc]h	chr14:31569253-31569504(-)$1	251	144	177	21.8874
:::::gggggggwwwwwwwwwwwwwwggggggg	chr2:21224441-21224649(-)$1	208	49	82	20.0347

#otherMatches

#Seq PSSM
ACUGUUUUUCUGGCUAUUUUGAAAUCUAGUAAA	chr14:39501055-39501276(-)$1	221	148	181	23.7433
AGAAGGGGGAGCUCUUUUUUUACGUUGAUUUUU	chr6:32948784-32949016(+)$1	232	139	172	18.8195
AAAUGCAAAAAAUCUUAAUACUGUUAUUCUUUG	chrX:108885660-108885932(-)$1	272	36	69	22.1021
UGUGGUUGAAGUCACAGAUGCCAUAUUCUUCAU	chr2:198284951-198285222(-)$1	271	208	241	23.7633
UUUUUGUUAAACUGAAUAGAAUUGUAUAGCGAU	chr6:119500504-119500743(-)$1	239	33	66	21.4482
GCUGUUGGCAGAGAUAAGUUUAAGAAACUGCCU	chr6:24291049-24291291(-)$1	242	52	85	23.0043
UCCCAUAGGCUGAUUCUCUCAUUCACAGUCUGU	chr8:121644513-121644771(-)$1	258	166	199	24.1245
UAAACUAAUACUCUUAAAUGGUCUUUCAGUAUA	chr7:26230895-26231115(-)$1	220	121	154	19.8241
UAUUCUUUUCAGAAUAGAAAACACUCUGAAAAG	chr2:201814060-201814354(-)$1	294	32	65	23.2905
gccucuacGGCCCCCCUCACAUUUGUGUAGAUG	chr20:43033958-43034171(+)$1	213	150	183	23.1761
AAGAUGUAAAUACUUAACACUCAAAUAUUAACA	chr1:25568843-25569124(-)$1	281	168	201	24.1848
GAAUAAAUUGUCUUUUUAUGAAUUAGGCUUUUU	chr7:6501613-6501861(-)$1	248	204	237	20.8410
UAAAAGUCUACGUUUUCCAAAACUUACGUUUCU	chr10:88810191-88810440(-)$1	249	176	209	21.8360
UACUUUGUGAGUUCACCUGUCUUUAUACUCAAA	chr10:70742694-70742981(+)$1	287	174	207	23.9520
UGUCAGGGUAUGAAAUUUUCCUUUCUCUUUUGC	chr11:78239699-78239970(-)$1	271	76	109	19.6750
UUAGGGUCAGCCAUUUUUAAUGAUCUCGGAUGA	chr2:232577757-232578024(+)$1	267	107	140	20.4656
UUGUCAUAUAAGAUUCAUAUUUACUUCUUAUAC	chr15:45010036-45010285(+)$1	249	197	230	24.5873
AUCACAAAUGACuuuauuauuuauuuuuuuuaa	chr20:10619533-10619749(-)$1	216	59	92	18.8670
AUUCUAUGUCUGUAAAAACCAACAAAGGCAUUG	chr8:17427683-17427947(+)$1	264	163	196	24.2489
ugcacagguaauaugccaugauuuuauuuuucc	chr1:70689726-70689970(+)$1	244	73	106	22.5425
UUUACUACAUGGGUUUGUAAGUUUUACCCAAAC	chr2:242276811-242277092(+)$1	281	149	182	20.6909
UCUUGGUCUGAUCUCAGCUUCUCCACAAUCAGA	chr20:47710746-47711014(+)$1	268	171	204	20.1578
GUCAGUGAUUUAAUCAUAUAAUUUAAUGAAUCU	chr16:2652996-2653250(+)$1	254	52	85	21.7845
UGGUUGCUUUUACUAUUAAUAAAUGUAUCUAGC	chr8:57875227-57875472(-)$1	245	166	199	22.7575
AGCUGUGAGCUGCCUAAGAAAUCAUGGCAUUCA	chr2:272231-272477(+)$1	246	19	52	21.3152
GUGAAGAAAACAAAGAUGAUGAUAAUGUUUUCA	chr21:34932015-34932264(+)$1	249	13	46	24.4886
UUCUGGCUUAUAUGUUGGUCAUUAUUAUUUGCC	chr13:111555631-111555885(-)$1	254	148	181	22.9342
AGCAUUAGUAGCAUGUUAAAUCUAAGCUAUUAA	chr1:70694149-70694405(+)$1	256	158	191	21.1887
uauuaucauuuuuuuuaaaucuucaaaaauguu	chrX:128626620-128626966(-)$1	346	76	109	21.8333
UUUUUUUUUUCCUUCCCAACCUCUCUUGCAAAA	chr6:64290908-64291137(+)$1	229	139	172	19.6750
CGUGACAAGUAACCAUUUCAAAAGACUGCUUUG	chr7:26238614-26238860(-)$1	246	194	227	20.7865
UUCCAAAUUGAGUAAUCAGGUGUCAACAAUUGU	chr14:31642560-31642816(-)$1	256	7	40	24.3505
CUUCACCCUGCCGUCAUGUCUAAGUCAGAGGUG	chr12:54674533-54674755(+)$1	222	43	76	20.9960
CAGUCUGUGGAUGAAGAAAAGGGUUUUUACAGU	chr6:42630247-42630498(+)$1	251	18	51	25.2662
uggaucgaaugguuuuuauaauuuucuauuuuA	chr11:65199594-65199848(+)$1	254	71	104	22.4689
UUUUUAAAAGAAAUCUUCAUUUAUUCUUCUUUU	chr2:21224416-21224639(-)$1	223	39	72	20.0347
CUUUCUUUCCCAUUAACUUGAGUGACCUGUGUG	chr16:28848291-28848567(+)$1	276	126	159	20.4343
GUGGACUUUUGUACAUACACUAAAAUUCUGAAG	chr12:6437907-6438200(-)$1	293	226	259	19.0008
AGAAGCUGAGCAGCAGCAAGACAUAGCAGGAGC	chr20:30738600-30738876(+)$1	276	179	212	20.5097
uggguaagcaggacuuuuuuuauauucuuagau	chr1:67886774-67887018(-)$1	244	70	103	23.2027
UCGAGACACUUGCCUUCUUCACCCAGCUAAUCU	chr1:43392309-43392513(-)$1	204	145	178	23.0564
AUCAUUUAGUUCACAUUAAUAGCCCAAUUAAUU	chr2:223789229-223789484(+)$1	255	130	163	24.2287
AUGACUGAAAGAACUUUAGCUAAAAUCUUCCAG	chr18:3277856-3278131(+)$1	275	71	104	23.7672
cacccggcugggcuccucAUUUUUACGGGUAAC	chr1:55530033-55530252(+)$1	219	106	139	24.6632
CUGUGUAUUUAUUUAAAACUCUGGUGAUAAAAA	chr19:18499785-18500052(+)$1	267	149	182	23.7745
UGUGCGCGCUUGGAGCGUGUUAGGCGAGUGCGU	chr1:109642857-109643060(+)$1	203	65	98	24.9785
cacccggcugggcuccucAUUUUUACGGGUAAC	chr1:55530052-55530274(+)$1	222	87	120	24.6632
cuaucugaaucauuuuuaaguauacauucagua	chr11:65198251-65198470(+)$1	219	138	171	19.8728
agagccugugugaaaaugagaaggaguguggau	chr17:7079007-7079263(-)$1	256	161	194	18.6432
CAGAAGUAUGAACCAGCUUUCUUUUUAUUAUUG	chr2:20449841-20450134(-)$1	293	98	131	20.2817
UUUUUUUAUAGCCUUCCAUGUUAAACUAUAAGU	chr20:34326889-34327121(-)$1	232	34	67	24.4245
UUACUUGUUUCAAAACUGCCCAUUCGAAACAGG	chr7:101468944-101469217(+)$1	273	221	254	23.5627
GUGGGAACAUGUGAACUAUGAAACUUAAACCUG	chr14:76117400-76117669(-)$1	269	129	162	21.3840
GGAACCUCAUUGCUACCACAGACUUGCACUGAA	chr16:87866108-87866342(-)$1	234	188	221	24.7423
CCCUCCACGUGUACACUACUGACAAACGGGUGG	chr11:65194799-65195023(+)$1	224	182	215	22.5923
GUACAUUUUGCUGGUGUAUUUUUAGGUAAAAUG	chr11:65271976-65272203(+)$1	227	65	98	22.2289
GGUAUCCACCUGCAGCCCUUUUAGUGGUGGUGU	chr20:4680561-4680854(+)$1	293	122	155	21.1889
GAUCUAAAUAUAGACAAUAUCCCCUUCUGAAUU	chr3:142742782-142743070(+)$1	288	103	136	21.5212
UUAAAGUUAUCCCCUUGCUACUUUACUGAUACC	chr3:57557459-57557710(-)$1	251	94	127	22.7297
GUUGUGCCAAAUUAUUCUCCUAUGUUUGGCUGC	chrX:132669862-132670077(-)$1	215	171	204	21.8600
GAAGAUUACACCUAUUUGAUUCUGCGGGUAAUC	chr2:21252588-21252838(-)$1	250	42	75	24.1297
uauguggaugugugugaaugugugaauguguau	chr2:236420512-236420796(+)$1	284	38	71	23.4715
GUAUGCUCAACAAUAAUCAUUAAAAUGUUUGCA	chr14:31569253-31569504(-)$1	251	144	177	21.8874
UUUUUAAAAGAAAUCUUCAUUUAUUCUUCUUUU	chr2:21224441-21224649(-)$1	208	49	82	20.0347

#DB
(..(((((.((((............)))).)))	chr14:39501055-39501276(-)$1	1	148	181	23.7433
((((((((((((.....................	chr6:32948784-32949016(+)$1	1	139	172	18.8195
...((((((.(((............))).))))	chrX:108885660-108885932(-)$1	1	36	69	22.1021
((.((.(((((................))))).	chr2:198284951-198285222(-)$1	1	208	241	23.7633
((.((((((.((...........)).)))))).	chr6:119500504-119500743(-)$1	1	33	66	21.4482
(((((.(((((................))))).	chr6:24291049-24291291(-)$1	1	52	85	23.0043
((((((((((((.............))))))))	chr8:121644513-121644771(-)$1	1	166	199	24.1245
...((((.((((...............))))))	chr7:26230895-26231115(-)$1	1	121	154	19.8241
...((((((((((...........)))))))))	chr2:201814060-201814354(-)$1	1	32	65	23.2905
((.((((((................)))))).)	chr20:43033958-43034171(+)$1	1	150	183	23.1761
(((((((.((((.............)))).)))	chr1:25568843-25569124(-)$1	1	168	201	24.1848
((.((((..((((...........))))..)))	chr7:6501613-6501861(-)$1	1	204	237	20.8410
.(((((...((((............))))..))	chr10:88810191-88810440(-)$1	1	176	209	21.8360
((((((.(((((..............)))))))	chr10:70742694-70742981(+)$1	1	174	207	23.9520
((((((((((....................)))	chr11:78239699-78239970(-)$1	1	76	109	19.6750
((..(((((.((...............)).)))	chr2:232577757-232578024(+)$1	1	107	140	20.4656
(((((((((((((............))))))).	chr15:45010036-45010285(+)$1	1	197	230	24.5873
(..((((.(((..................))).	chr20:10619533-10619749(-)$1	1	59	92	18.8670
.(((.((((((..............)))))).)	chr8:17427683-17427947(+)$1	1	163	196	24.2489
((...(((.((((...........))))...))	chr1:70689726-70689970(+)$1	1	73	106	22.5425
)))))(((((((((...........)))))...	chr2:242276811-242277092(+)$1	1	149	182	20.6909
((((((((((((...............))))))	chr20:47710746-47711014(+)$1	1	171	204	20.1578
))))).((((((..............)))))).	chr16:2652996-2653250(+)$1	1	52	85	21.7845
)(((.(((..(((...........)))...)))	chr8:57875227-57875472(-)$1	1	166	199	22.7575
.((((((...((((...........))))....	chr2:272231-272477(+)$1	1	19	52	21.3152
.((..(((((((.............))))))).	chr21:34932015-34932264(+)$1	1	13	46	24.4886
)))((((..(((.............)))..)))	chr13:111555631-111555885(-)$1	1	148	181	22.9342
....((((((((.............))))))))	chr1:70694149-70694405(+)$1	1	158	191	21.1887
((.((.(((((((...........))))))).)	chrX:128626620-128626966(-)$1	1	76	109	21.8333
((((((((((....................)))	chr6:64290908-64291137(+)$1	1	139	172	19.6750
.(.((((((((...............))))...	chr7:26238614-26238860(-)$1	1	194	227	20.7865
((...(((((................)))))..	chr14:31642560-31642816(-)$1	1	7	40	24.3505
((.(((((((.(...........).))).))))	chr12:54674533-54674755(+)$1	1	43	76	20.9960
(...(((((((..............))))))).	chr6:42630247-42630498(+)$1	1	18	51	25.2662
((....((((((.............))))))..	chr11:65199594-65199848(+)$1	1	71	104	22.4689
.....(((((((..............)))))))	chr2:21224416-21224639(-)$1	1	39	72	20.0347
((.((((((.(((...............))).)	chr16:28848291-28848567(+)$1	1	126	159	20.4343
...((((((....................))))	chr12:6437907-6438200(-)$1	1	226	259	19.0008
....((((..(.((...........))..)..)	chr20:30738600-30738876(+)$1	1	179	212	20.5097
((((....(((((............)))).)..	chr1:67886774-67887018(-)$1	1	70	103	23.2027
.(.(((.....((............))...)))	chr1:43392309-43392513(-)$1	1	145	178	23.0564
.(((.((((((..............)))))).)	chr2:223789229-223789484(+)$1	1	130	163	24.2287
.((((((.((((.............)))).)))	chr18:3277856-3278131(+)$1	1	71	104	23.7672
(((...(((.(..............).)))...	chr1:55530033-55530252(+)$1	1	106	139	24.6632
((.(((.((((((............)))))).)	chr19:18499785-18500052(+)$1	1	149	182	23.7745
((((((((((((............)))))))))	chr1:109642857-109643060(+)$1	1	65	98	24.9785
(((...(((.(..............).)))...	chr1:55530052-55530274(+)$1	1	87	120	24.6632
(((.((((((...............))))))))	chr11:65198251-65198470(+)$1	1	138	171	19.8728
((.((((((......................))	chr17:7079007-7079263(-)$1	1	161	194	18.6432
((.((..(((((...........)))))..)).	chr2:20449841-20450134(-)$1	1	98	131	20.2817
(((.(((((((..............))))))).	chr20:34326889-34327121(-)$1	1	34	67	24.4245
..(((((((((..............))))))))	chr7:101468944-101469217(+)$1	1	221	254	23.5627
((((((.((.((................)).))	chr14:76117400-76117669(-)$1	1	129	162	21.3840
((....(((.(((............))).))).	chr16:87866108-87866342(-)$1	1	188	221	24.7423
))((((((.(((.............))).))))	chr11:65194799-65195023(+)$1	1	182	215	22.5923
)..(((((((((............)))))))))	chr11:65271976-65272203(+)$1	1	65	98	22.2289
((...(((((...............)))))...	chr20:4680561-4680854(+)$1	1	122	155	21.1889
....(((((.((((...........)))).)))	chr3:142742782-142743070(+)$1	1	103	136	21.5212
)(((((.((((................)))).)	chr3:57557459-57557710(-)$1	1	94	127	22.7297
((...(((((((...........))))))).))	chrX:132669862-132670077(-)$1	1	171	204	21.8600
((.((((((.((.............))))))))	chr2:21252588-21252838(-)$1	1	42	75	24.1297
((((((.((((..............)))).)))	chr2:236420512-236420796(+)$1	1	38	71	23.4715
((((((((((((.............)).))).)	chr14:31569253-31569504(-)$1	1	144	177	21.8874
.....(((((((..............)))))))	chr2:21224441-21224649(-)$1	1	49	82	20.0347

#PSSM
c : 0.14	d : 0.09	[ : 0.09	f : 0.09	b : 0.09	g : 0.07	e : 0.07	= : 0.06	: : 0.06	" : 0.06	i : 0.04	# : 0.04	( : 0.01	C : 0.01	h : 0.01	
c : 0.18	f : 0.12	b : 0.09	e : 0.07	d : 0.07	= : 0.06	: : 0.06	" : 0.06	g : 0.06	# : 0.04	! : 0.03	i : 0.03	a : 0.03	( : 0.01	C : 0.01	h : 0.01	
[ : 0.20	f : 0.14	" : 0.12	e : 0.07	# : 0.07	= : 0.06	: : 0.06	! : 0.04	d : 0.04	g : 0.04	c : 0.04	i : 0.03	b : 0.01	h : 0.01	
f : 0.21	" : 0.10	d : 0.09	e : 0.07	= : 0.07	c : 0.07	# : 0.07	i : 0.06	b : 0.04	g : 0.04	! : 0.03	: : 0.03	[ : 0.03	h : 0.01	
f : 0.23	d : 0.10	e : 0.09	" : 0.09	= : 0.07	g : 0.07	i : 0.06	b : 0.04	[ : 0.04	# : 0.04	h : 0.03	: : 0.03	c : 0.03	! : 0.01	
f : 0.23	d : 0.12	g : 0.12	e : 0.10	= : 0.07	i : 0.06	c : 0.06	[ : 0.04	# : 0.04	h : 0.03	" : 0.03	: : 0.01	! : 0.01	a : 0.01	
f : 0.25	g : 0.14	d : 0.12	e : 0.10	= : 0.07	[ : 0.07	c : 0.07	i : 0.04	h : 0.03	" : 0.01	# : 0.01	$ : 0.01	! : 0.01	
f : 0.23	e : 0.14	g : 0.12	c : 0.10	= : 0.07	d : 0.07	[ : 0.06	i : 0.04	! : 0.03	" : 0.03	h : 0.01	# : 0.01	$ : 0.01	b : 0.01	
f : 0.21	e : 0.12	g : 0.12	d : 0.10	c : 0.09	= : 0.07	! : 0.06	[ : 0.04	i : 0.04	" : 0.03	h : 0.01	a : 0.01	$ : 0.01	b : 0.01	
d : 0.17	[ : 0.15	g : 0.12	e : 0.10	f : 0.10	= : 0.07	c : 0.07	i : 0.04	! : 0.03	^ : 0.03	y : 0.01	" : 0.01	h : 0.01	$ : 0.01	
d : 0.20	g : 0.12	c : 0.10	f : 0.09	e : 0.07	b : 0.07	^ : 0.06	= : 0.04	i : 0.04	a : 0.04	y : 0.03	x : 0.03	h : 0.01	[ : 0.01	$ : 0.01	
d : 0.15	w : 0.12	c : 0.09	b : 0.09	g : 0.09	y : 0.07	^ : 0.07	f : 0.06	= : 0.04	e : 0.04	x : 0.04	i : 0.03	h : 0.01	a : 0.01	[ : 0.01	
w : 0.18	v : 0.15	d : 0.10	^ : 0.09	y : 0.09	x : 0.09	c : 0.06	t : 0.06	g : 0.03	b : 0.03	u : 0.03	= : 0.01	e : 0.01	f : 0.01	
w : 0.18	u : 0.15	v : 0.15	t : 0.14	x : 0.10	^ : 0.09	y : 0.09	d : 0.03	e : 0.01	b : 0.01	
t : 0.20	w : 0.18	u : 0.15	v : 0.15	x : 0.10	^ : 0.09	y : 0.09	
t : 0.20	w : 0.18	u : 0.15	v : 0.15	x : 0.10	^ : 0.09	y : 0.09	
t : 0.20	w : 0.18	u : 0.15	v : 0.15	x : 0.10	^ : 0.09	y : 0.09	
t : 0.20	w : 0.18	u : 0.15	v : 0.15	x : 0.10	^ : 0.09	y : 0.09	
t : 0.20	w : 0.18	u : 0.15	v : 0.15	x : 0.10	^ : 0.09	y : 0.09	
t : 0.20	w : 0.18	u : 0.15	v : 0.15	x : 0.10	^ : 0.09	y : 0.09	
t : 0.20	w : 0.18	u : 0.15	v : 0.15	x : 0.10	^ : 0.09	y : 0.09	
t : 0.20	w : 0.18	u : 0.15	v : 0.15	x : 0.10	^ : 0.09	y : 0.09	
t : 0.20	w : 0.18	u : 0.15	v : 0.15	x : 0.10	^ : 0.09	y : 0.09	
w : 0.18	u : 0.15	v : 0.15	t : 0.14	x : 0.10	^ : 0.09	y : 0.09	b : 0.01	a : 0.01	e : 0.01	g : 0.01	
w : 0.18	v : 0.15	u : 0.12	x : 0.10	^ : 0.09	y : 0.09	t : 0.06	= : 0.03	d : 0.03	g : 0.03	b : 0.01	c : 0.01	] : 0.01	e : 0.01	i : 0.01	
d : 0.15	^ : 0.09	c : 0.09	f : 0.09	g : 0.09	y : 0.07	x : 0.07	w : 0.06	b : 0.06	i : 0.04	e : 0.04	= : 0.03	a : 0.03	] : 0.01	h : 0.01	
d : 0.17	f : 0.12	g : 0.12	^ : 0.09	c : 0.09	e : 0.07	y : 0.06	x : 0.06	b : 0.06	i : 0.04	= : 0.03	] : 0.03	h : 0.01	
d : 0.20	f : 0.15	g : 0.12	c : 0.10	e : 0.10	^ : 0.09	i : 0.04	= : 0.03	3 : 0.03	b : 0.01	h : 0.01	x : 0.01	2 : 0.01	y : 0.01	] : 0.01	
d : 0.17	f : 0.15	g : 0.12	^ : 0.09	e : 0.09	] : 0.06	2 : 0.06	c : 0.06	i : 0.04	3 : 0.04	= : 0.03	b : 0.03	h : 0.01	
f : 0.20	g : 0.12	] : 0.10	e : 0.09	c : 0.09	^ : 0.06	d : 0.06	2 : 0.06	i : 0.04	3 : 0.04	= : 0.03	4 : 0.01	h : 0.01	a : 0.01	b : 0.01	
f : 0.23	g : 0.12	e : 0.10	c : 0.09	d : 0.07	= : 0.06	3 : 0.06	i : 0.04	4 : 0.04	^ : 0.03	2 : 0.03	] : 0.03	h : 0.01	a : 0.01	b : 0.01	
f : 0.15	] : 0.12	g : 0.12	e : 0.09	c : 0.09	d : 0.07	= : 0.06	3 : 0.06	4 : 0.06	i : 0.04	b : 0.03	^ : 0.01	h : 0.01	5 : 0.01	2 : 0.01	
f : 0.14	d : 0.10	c : 0.10	e : 0.07	] : 0.07	4 : 0.07	3 : 0.07	= : 0.06	g : 0.06	2 : 0.04	i : 0.04	h : 0.03	b : 0.03	^ : 0.01	: : 0.01	5 : 0.01	

#score	1422.0620662214951
#seq	64
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF854NXI_HNRNPU_UTR_m3_run2.txt

#BEAR
gggggg[ccc####cccnnnnnccc55555cccgggg	chr11:65311582-65311845(-)$1	263	137	174	13.4798
bb!!dddd$$$$$ffffffmmmmffffff333dddd2	chr6:86352546-86352826(-)$1	280	133	170	14.4053
hh[bb===========lll===========22bbhhh	chr3:49045342-49045634(+)$1	292	58	95	14.3615
cc!!ffffff[gggggggnnnnnggggggg22fffff	chr16:30014035-30014305(+)$1	270	25	62	15.7226
####dddd[ccc[ddddnnnnndddd]ccc22dddd3	chr12:30907477-30907733(-)$1	256	87	124	17.4632

#otherMatches

#Seq PSSM
CCAGGGUGGAGCAGAUCUGAGUGAUGAAAAUCCCCUU	chr11:65311582-65311845(-)$1	263	137	174	13.4798
CGCACCGGGAGCGCGCUCGGAGGCGAGUGGAACUGGA	chr6:86352546-86352826(-)$1	280	133	170	14.4053
CGGCCCCUCAGGGGGUGUGGCCUCUUGGGGAAGGCGG	chr3:49045342-49045634(+)$1	292	58	95	14.3615
GCAGCUAGAUAGCGGCCCGUGAGGGGCUGCGCAUUUG	chr16:30014035-30014305(+)$1	270	25	62	15.7226
AGGGAGGCGGCUGACCCGGCGAGGGUGGGCAGGUCUG	chr12:30907477-30907733(-)$1	256	87	124	17.4632

#DB
((((((.(((....(((.....))).....)))))))	chr11:65311582-65311845(-)$1	1	137	174	13.4798
((..((((.....((((((....))))))...)))).	chr6:86352546-86352826(-)$1	1	133	170	14.4053
((.(((((((((((((...)))))))))))..)))))	chr3:49045342-49045634(+)$1	1	58	95	14.3615
((..((((((.(((((((.....)))))))..)))))	chr16:30014035-30014305(+)$1	1	25	62	15.7226
....((((.(((.((((.....)))).)))..)))).	chr12:30907477-30907733(-)$1	1	87	124	17.4632

#PSSM
g : 0.20	b : 0.20	h : 0.20	c : 0.20	# : 0.20	
g : 0.20	b : 0.20	h : 0.20	c : 0.20	# : 0.20	
! : 0.40	g : 0.20	[ : 0.20	# : 0.20	
! : 0.40	g : 0.20	b : 0.20	# : 0.20	
d : 0.40	g : 0.20	b : 0.20	f : 0.20	
d : 0.40	g : 0.20	= : 0.20	f : 0.20	
d : 0.40	[ : 0.20	= : 0.20	f : 0.20	
d : 0.40	c : 0.20	= : 0.20	f : 0.20	
c : 0.20	$ : 0.20	= : 0.20	f : 0.20	[ : 0.20	
c : 0.40	$ : 0.20	= : 0.20	f : 0.20	
# : 0.20	$ : 0.20	= : 0.20	[ : 0.20	c : 0.20	
# : 0.20	$ : 0.20	= : 0.20	g : 0.20	c : 0.20	
# : 0.20	$ : 0.20	= : 0.20	g : 0.20	[ : 0.20	
# : 0.20	f : 0.20	= : 0.20	g : 0.20	d : 0.20	
c : 0.20	f : 0.20	= : 0.20	g : 0.20	d : 0.20	
c : 0.20	f : 0.20	= : 0.20	g : 0.20	d : 0.20	
c : 0.20	f : 0.20	l : 0.20	g : 0.20	d : 0.20	
n : 0.40	f : 0.20	l : 0.20	g : 0.20	
n : 0.60	f : 0.20	l : 0.20	
n : 0.60	m : 0.20	= : 0.20	
n : 0.60	m : 0.20	= : 0.20	
n : 0.60	m : 0.20	= : 0.20	
c : 0.20	m : 0.20	= : 0.20	n : 0.20	d : 0.20	
c : 0.20	f : 0.20	= : 0.20	g : 0.20	d : 0.20	
c : 0.20	f : 0.20	= : 0.20	g : 0.20	d : 0.20	
5 : 0.20	f : 0.20	= : 0.20	g : 0.20	d : 0.20	
5 : 0.20	f : 0.20	= : 0.20	g : 0.20	] : 0.20	
5 : 0.20	f : 0.20	= : 0.20	g : 0.20	c : 0.20	
5 : 0.20	f : 0.20	= : 0.20	g : 0.20	c : 0.20	
5 : 0.20	3 : 0.20	= : 0.20	g : 0.20	c : 0.20	
2 : 0.60	c : 0.20	3 : 0.20	
2 : 0.60	c : 0.20	3 : 0.20	
d : 0.40	c : 0.20	b : 0.20	f : 0.20	
d : 0.40	g : 0.20	b : 0.20	f : 0.20	
d : 0.40	g : 0.20	h : 0.20	f : 0.20	
d : 0.40	g : 0.20	h : 0.20	f : 0.20	
g : 0.20	2 : 0.20	h : 0.20	f : 0.20	3 : 0.20	

#score	75.43261194858003
#seq	5
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_transcript_m2_run2.txt

#BEAR
!!dddd!!bb[cccqqqqqqqqccc]bb22dddd2	chr11:5290772-5291006(-)$1	234	77	112	16.0143
[dddd[ccc[cccbbqqqqqqqqbb]ccc]ccc]d	chr10:75578192-75578491(-)$1	299	134	169	14.1887
bbeeeee[ccc[bbrrrrrrrrrbb]ccc22eeee	chr19:16187666-16187904(+)$1	238	139	174	11.8438
ffffff[eeeee[aqqqqqqqqa]eeeeeffffff	chr2:20550265-20550589(-)$1	324	103	138	15.4788
[eeeee!!ccc[bbqqqqqqqqbb]ccc]eeeee]	chr1:161087641-161087866(-)$1	225	41	76	16.1448
ccc!!ccc"""cccrrrrrrrrrccc333ccc]cc	chr22:50033961-50034203(-)$1	242	111	146	13.5565
fffff[bb!!ddddqqqqqqqqdddd22bb]ffff	chr2:61765055-61765305(-)$1	250	174	209	14.1626
ddd[gggggggcccrrrrrrrrrccc]gggggggd	chr5:176759563-176759833(-)$1	270	232	267	12.8866
"""ffffff####aqqqqqqqqa4444ffffff55	chr6:34359702-34359968(-)$1	266	57	92	14.2710
iiiii!!ffffffssssssssssffffff22iiii	chr22:49920713-49920923(-)$1	210	57	92	13.5582
ddddffffff[cccqqqqqqqqccc22ffffffGG	chr11:64124699-64124950(+)$1	251	162	197	14.6943
$eeeee!!ffffffqqqqqqqqffffff22eeeee	chr4:2418723-2419041(-)$1	318	249	284	16.2647
)ccc[bb[bb[cccqqqqqqqqccc]bb]bbccc9	chr8:142432539-142432801(+)$1	262	165	200	14.3949
[bb!!a[a!!eeeeerrrrrrrrreeeee22a]a2	chr22:49970779-49971029(-)$1	250	84	119	11.4874
h[ccc"""eeeeerrrrrrrrreeeee4444ccch	chr2:10184342-10184633(+)$1	291	91	126	12.8524
a[===========ttttttttttt===========	chr17:27444213-27444486(-)$1	273	232	267	11.8371
dddd[a[gggggggwwwwwwwwwwwwwwggggggg	chr22:50024759-50025027(-)$1	268	223	258	13.6852
"""bb$$$$$ddddqqqqqqqqdddd4444bb333	chr16:88543547-88543831(+)$1	284	183	218	14.8145
dddd[ccc!!ddddqqqqqqqqdddd666666ccc	chr6:170686278-170686501(+)$1	223	96	131	13.1360
gggggeeeee[cccqqqqqqqqccc]eeeeeFFFF	chr19:55625180-55625504(-)$1	324	176	211	14.8887
i[eeeeeeeeee[aqqqqqqqqa]eeeee333eee	chr19:1408547-1408775(+)$1	228	106	141	16.6353
[ccc$$$$$eeeeeqqqqqqqqeeeee4444cccd	chr5:139646483-139646722(-)$1	239	57	92	16.1061
c!!eeeee####bbqqqqqqqqbb333eeeee22c	chr21:45348860-45349138(+)$1	278	61	96	15.2910
fddddiiiiiiiiiqqqqqqqqiiiiiiiii22dd	chr19:13261647-13261943(+)$1	296	160	195	14.7618
ddd[cccbb!!bbqqqqqqqqbb4444bb22cccd	chr2:208394825-208395091(+)$1	266	190	225	13.6027
eee!!eeeee[cccqqqqqqqqccc]eeeee22ee	chr14:102249657-102249973(+)$1	316	182	217	16.3710
gggg"""bb!!cccqqqqqqqqccc22bb22gggg	chr2:219267346-219267593(+)$1	247	137	172	17.6592
eeee"""a[bb[bbqqqqqqqqbb]bb]a333eee	chr22:50355384-50355618(+)$1	234	140	175	16.4583
eeee"""ddddcccqqqqqqqqccc333dddd333	chr10:105154298-105154596(-)$1	298	159	194	16.9139
eeee####eeeeerrrrrrrrreeeee4444eeee	chr5:65364513-65364831(+)$1	318	75	110	13.2301
ffffff!!ffffffqqqqqqqqffffffffffff:	chr17:57230643-57230900(-)$1	257	168	203	14.6752
ffff[a[cccddddqqqqqqqqdddd]ccc]a]ff	chr16:89005867-89006100(-)$1	233	21	56	15.6258
"""ffffff!!cccqqqqqqqqccc22ffffff33	chr10:43903828-43904104(-)$1	276	12	47	16.4967
ggggggg[dddd[aqqqqqqqqa]dddd]gggggg	chr19:10406667-10406906(+)$1	239	96	131	15.9713
dd!!ccc[bb[cccqqqqqqqqccc]bb]ccc]dd	chr2:61764479-61764739(-)$1	260	85	120	16.2139
======"""cccssssssssssccc]=========	chr22:24497765-24498040(+)$1	275	157	192	14.3074
gggg!!gggggggssssssssssggggggg]gggg	chr19:40790703-40790943(-)$1	240	83	118	13.3617
:ccc[eeeee[cccqqqqqqqqccc]eeeee]ccc	chr16:15234717-15235030(-)$1	313	187	222	15.6000
eee[gggggggcccqqqqqqqqccc22ggggggge	chr7:148580778-148581091(-)$1	313	140	175	16.9114
bb[eeeeeffffffrrrrrrrrrffffff]eeeee	chr9:96938136-96938343(+)$1	207	18	53	11.4126
ffffff!!bb[cccqqqqqqqqcccbb333fffff	chr19:10406334-10406636(+)$1	302	194	229	16.7535
[ccc[a[bb[bbbbqqqqqqqqbb]bb]bb]a]cc	chr16:2205921-2206171(+)$1	250	84	119	14.7187
[eeeee!!ffffffqqqqqqqqffffffeeeee]b	chr13:92003811-92004024(+)$1	213	106	141	15.9179
ee"""bb!!eeeeeqqqqqqqqeeeeebb22eeee	chr5:167987911-167988163(-)$1	252	130	165	15.6054
""ffffffffffffqqqqqqqqffffff]ffffff	chr15:93426373-93426633(+)$1	260	211	246	15.1054
ee[ccc[ccc[cccqqqqqqqqcccccc22ccc]e	chr1:27929158-27929416(-)$1	258	45	80	17.2849
:eeeee"""eeeeeqqqqqqqqeeeee333eeeee	chr18:51884588-51884856(+)$1	268	228	263	15.9378
dd$$$$$dddd!!aqqqqqqqqa22dddd333ddd	chr16:89042842-89043143(-)$1	301	61	96	14.6184
===="""eeeeesssssssssseeeee]=======	chr6:31774517-31774803(-)$1	286	21	56	13.3505
eeeee!!a"""ddddqqqqqqqqdddd]a22eeee	chr14:102247819-102248078(+)$1	259	108	143	15.0258
b[bb"""ffffffssssssssssffffff22bb]b	chr6:5000868-5001163(-)$1	295	71	106	11.9682
d!!ccc!!ddddbbqqqqqqqqbb22ddddccc]d	chr1:227161667-227161913(+)$1	246	25	60	14.9811
iiiii!!ffffffssssssssssffffff22iiii	chr22:49920706-49920913(-)$1	207	47	82	13.5582
iiiii!!ddddwwwwwwwwwwwwwwdddd22iiii	chr7:1065449-1065695(-)$1	246	69	104	13.9300

#otherMatches

#Seq PSSM
UCUGAUAUGGUGUCAUUUCAUAGACUCCUCGUUGU	chr11:5290772-5291006(-)$1	234	77	112	16.0143
UCCCAACUGUGCUGCUUGGCUGUGCUGGCCCGGCU	chr10:75578192-75578491(-)$1	299	134	169	14.1887
GUGGAGCGGCGGGAGGGGGCGUAUCGUGCAGGCUC	chr19:16187666-16187904(+)$1	238	139	174	11.8438
gGUGGUAGGUGGAGAAAGAAGACAUUGCCGCCACC	chr2:20550265-20550589(-)$1	324	103	138	15.4788
GCGGCGAAGAUGGCGGAGAACAGCGGUCGCGCCGG	chr1:161087641-161087866(-)$1	225	41	76	16.1448
GGCAGCCCAGUGGUGACACGCAGGCCUGAGGGAGC	chr22:50033961-50034203(-)$1	242	111	146	13.5565
GGGAGUCGGACUGCAACUGGCAGCAGAGCGUCUCC	chr2:61765055-61765305(-)$1	250	174	209	14.1626
GGGUGGGGCUUGGAUAUGUAGACUCCUGGGCCUCC	chr5:176759563-176759833(-)$1	270	232	267	12.8866
GAAUUUCCUGAGGCGAAAAAAGGGGGAAGGAGAAA	chr6:34359702-34359968(-)$1	266	57	92	14.2710
GCAUAUUUGUACGUCUGCAUGUUUGUGCAUCUGUG	chr22:49920713-49920923(-)$1	210	57	92	13.5582
GGCUGGCAGGAGUUGGCAAGAGAACCCCCUGCCCU	chr11:64124699-64124950(+)$1	251	162	197	14.6943
CGCCUCCACCGUGGGUGAGCUGUCACGGCAGAGGU	chr4:2418723-2419041(-)$1	318	249	284	16.2647
ACUCCACGCUGUGUGGAUAGAGGCAGGGGGUGAGG	chr8:142432539-142432801(+)$1	262	165	200	14.3949
gucugugcaggcuccguggguguaggggugaggag	chr22:49970779-49971029(-)$1	250	84	119	11.4874
GAGGCGGGAACGCGGCACGCGAGCGUUGGGGGCCC	chr2:10184342-10184633(+)$1	291	91	126	12.8524
CUCCAUCCUUCAAGAUGACUUACGUUGGAGGAUGG	chr17:27444213-27444486(-)$1	273	232	267	11.8371
CUUCAGAGAAACAGAGAAGAGCAUAGCACUGUUUC	chr22:50024759-50025027(-)$1	268	223	258	13.6852
CUUUCAGACUCUUGAAGAGAAGCAAGCACAGAUUU	chr16:88543547-88543831(+)$1	284	183	218	14.8145
GCGUCCCUAAUCCCAGAUGCCCGGGAGAACACAGG	chr6:170686278-170686501(+)$1	223	96	131	13.1360
cuccuggguugaauggggagggguugggccuggac	chr19:55625180-55625504(-)$1	324	176	211	14.8887
GAGCUGCGGAAGGGAGAGUCAGCGCUUCCGAGGCG	chr19:1408547-1408775(+)$1	228	106	141	16.6353
ACUGUAACCCGCACCGCAGCAAGUGUGAUUCCAGU	chr5:139646483-139646722(-)$1	239	57	92	16.1061
UUUUGAAAACUCCGUGCGUUCUCGUUAUUUCACUG	chr21:45348860-45349138(+)$1	278	61	96	15.2910
UCCAGGGGGGCCCUCUGUGUGUGGGGUCUCCGUCU	chr19:13261647-13261943(+)$1	296	160	195	14.7618
CUCGCAGCGAACAAAGAAUAAUggcggcggacugg	chr2:208394825-208395091(+)$1	266	190	225	13.6027
UCCUCUCUCUGGUCUUGGCCCUGACGAGAGAAUGG	chr14:102249657-102249973(+)$1	316	182	217	16.3710
UCCUGCACUAGGCUGAGGUUGAGGCAGGGGAAGGG	chr2:219267346-219267593(+)$1	247	137	172	17.6592
CGGCACAUGGAGGGGCUGAUGACUGUUGGGCGGCC	chr22:50355384-50355618(+)$1	234	140	175	16.4583
CUUUUAUCGCUUCUGUUGGCUAAGAUCAAGUGUAU	chr10:105154298-105154596(-)$1	298	159	194	16.9139
UGCAUGAUACUUCUCUGGUUUUGGGGUUACUUGUA	chr5:65364513-65364831(+)$1	318	75	110	13.2301
GUAAUAAUGAACUUUUAGUUUUAAGUUUUAUUAUC	chr17:57230643-57230900(-)$1	257	168	203	14.6752
CUGGGCGUUGGGAGUCAGAUACUUCCACAGGGGCC	chr16:89005867-89006100(-)$1	233	21	56	15.6258
GGGGGGUGGGAUUUGAGAUUAGGGAGACUAUCCGA	chr10:43903828-43904104(-)$1	276	12	47	16.4967
GACUUGUCGCCAGGGGGCUAAGUGUGGUCACGGGU	chr19:10406667-10406906(+)$1	239	96	131	15.9713
gcggccgggcgggcgggaggaggccggcguggggc	chr2:61764479-61764739(-)$1	260	85	120	16.2139
gguaguagcaugucuccaucuucauaacugcccug	chr22:24497765-24498040(+)$1	275	157	192	14.3074
CUGCAAGUUUGCGGGACGGGGAGCGCAGGCCGCAG	chr19:40790703-40790943(-)$1	240	83	118	13.3617
GGUCAUUGCUGGGAAGAGCAAGUCUAGGCAGAGGC	chr16:15234717-15235030(-)$1	313	187	222	15.6000
ggggcgccggggccggggucggggcgUUCCGGUGC	chr7:148580778-148581091(-)$1	313	140	175	16.9114
GAUUACCGAGGAGGAAAAAAAGCCUUCCUGUGGUG	chr9:96938136-96938343(+)$1	207	18	53	11.4126
GCAGGAAAGGACUUUAAAACUUGGGCUGGAUUCUG	chr19:10406334-10406636(+)$1	302	194	229	16.7535
ucggggucggggucagggucggggUCCGCGUCGCU	chr16:2205921-2206171(+)$1	250	84	119	14.7187
GUAAAGUUAGAGUAUAUCUUUUUGCUUUCUUUGGA	chr13:92003811-92004024(+)$1	213	106	141	15.9179
uauaccaccagugcUUAAUGUUGCAUUUGAUUAGU	chr5:167987911-167988163(-)$1	252	130	165	15.6054
GGUGCCCUGGGCCCGAGUCGUAGGGUCCUGGGGUA	chr15:93426373-93426633(+)$1	260	211	246	15.1054
UCGGGGAGUUGAGGGGCGGGGACCUAAUGACCCGG	chr1:27929158-27929416(-)$1	258	45	80	17.2849
UGGUUUCGGAGUGAAAAGCAUCUCACUGAAGAACU	chr18:51884588-51884856(+)$1	268	228	263	15.9378
CCAGGAAGGGCGGCCCAGGUAAGAGGCUCGAGGGG	chr16:89042842-89043143(-)$1	301	61	96	14.6184
UCGGAAUGAAGGAAACCCCGCCCCUUUCCCGGCUU	chr6:31774517-31774803(-)$1	286	21	56	13.3505
CGGCCUUCCAAGGAGACCCUUAGCUCCCGCCGGCC	chr14:102247819-102248078(+)$1	259	108	143	15.0258
gucuucugcaugcuuggucuucugcaugcuugguc	chr6:5000868-5001163(-)$1	295	71	106	11.9682
UGCCCUUAAGCACUUUUCACCCAGCCUGCUAGGAA	chr1:227161667-227161913(+)$1	246	25	60	14.9811
GCAUAUUUGUACGUCUGCAUGUUUGUGCAUCUGUG	chr22:49920706-49920913(-)$1	207	47	82	13.5582
GUUCACUCUUCCCUCCACUGCAGCUGAAGCUUGAG	chr7:1065449-1065695(-)$1	246	69	104	13.9300

#DB
..((((..((.(((........))).))..)))).	chr11:5290772-5291006(-)$1	1	77	112	16.0143
.((((.(((.(((((........)).))).))).)	chr10:75578192-75578491(-)$1	1	134	169	14.1887
))(((((.(((.((.........)).)))..))))	chr19:16187666-16187904(+)$1	1	139	174	11.8438
((((((.(((((.(........).)))))))))))	chr2:20550265-20550589(-)$1	1	103	138	15.4788
.(((((..(((.((........)).))).))))).	chr1:161087641-161087866(-)$1	1	41	76	16.1448
(((..(((...(((.........)))...))).))	chr22:50033961-50034203(-)$1	1	111	146	13.5565
(((((.((..((((........))))..)).))))	chr2:61765055-61765305(-)$1	1	174	209	14.1626
(((.((((((((((.........))).))))))))	chr5:176759563-176759833(-)$1	1	232	267	12.8866
...((((((....(........)....))))))..	chr6:34359702-34359968(-)$1	1	57	92	14.2710
(((((..((((((..........))))))..))))	chr22:49920713-49920923(-)$1	1	57	92	13.5582
))))((((((.(((........)))..))))))))	chr11:64124699-64124950(+)$1	1	162	197	14.6943
.(((((..((((((........))))))..)))))	chr4:2418723-2419041(-)$1	1	249	284	16.2647
.(((.((.((.(((........))).)).))))).	chr8:142432539-142432801(+)$1	1	165	200	14.3949
.((..(.(..(((((.........)))))..).).	chr22:49970779-49971029(-)$1	1	84	119	11.4874
(.(((...(((((.........)))))....))))	chr2:10184342-10184633(+)$1	1	91	126	12.8524
(.(((((((((((...........)))))))))))	chr17:27444213-27444486(-)$1	1	232	267	11.8371
((((.(.(((((((..............)))))))	chr22:50024759-50025027(-)$1	1	223	258	13.6852
...((.....((((........))))....))...	chr16:88543547-88543831(+)$1	1	183	218	14.8145
((((.(((..((((........))))......)))	chr6:170686278-170686501(+)$1	1	96	131	13.1360
)))))(((((.(((........))).)))))))))	chr19:55625180-55625504(-)$1	1	176	211	14.8887
(.((((((((((.(........).)))))...)))	chr19:1408547-1408775(+)$1	1	106	141	16.6353
.(((.....(((((........)))))....))))	chr5:139646483-139646722(-)$1	1	57	92	16.1061
(..(((((....((........))...)))))..)	chr21:45348860-45349138(+)$1	1	61	96	15.2910
((((((((((((((........)))))))))..))	chr19:13261647-13261943(+)$1	1	160	195	14.7618
(((.(((((..((........))....))..))))	chr2:208394825-208395091(+)$1	1	190	225	13.6027
(((..(((((.(((........))).)))))..))	chr14:102249657-102249973(+)$1	1	182	217	16.3710
((((...((..(((........)))..))..))))	chr2:219267346-219267593(+)$1	1	137	172	17.6592
((((...(.((.((........)).)).)...)))	chr22:50355384-50355618(+)$1	1	140	175	16.4583
((((...(((((((........)))...))))...	chr10:105154298-105154596(-)$1	1	159	194	16.9139
((((....(((((.........)))))....))))	chr5:65364513-65364831(+)$1	1	75	110	13.2301
((((((..((((((........)))))))))))).	chr17:57230643-57230900(-)$1	1	168	203	14.6752
((((.(.(((((((........)))).))).).))	chr16:89005867-89006100(-)$1	1	21	56	15.6258
...((((((..(((........)))..))))))..	chr10:43903828-43904104(-)$1	1	12	47	16.4967
(((((((.((((.(........).)))).))))))	chr19:10406667-10406906(+)$1	1	96	131	15.9713
((..(((.((.(((........))).)).))).))	chr2:61764479-61764739(-)$1	1	85	120	16.2139
((((((...(((..........))).)))))))))	chr22:24497765-24498040(+)$1	1	157	192	14.3074
((((..(((((((..........))))))).))))	chr19:40790703-40790943(-)$1	1	83	118	13.3617
.(((.(((((.(((........))).))))).)))	chr16:15234717-15235030(-)$1	1	187	222	15.6000
(((.((((((((((........)))..))))))))	chr7:148580778-148581091(-)$1	1	140	175	16.9114
((.(((((((((((.........)))))).)))))	chr9:96938136-96938343(+)$1	1	18	53	11.4126
((((((..((.(((........)))))...)))))	chr19:10406334-10406636(+)$1	1	194	229	16.7535
.(((.(.((.((((........)).)).)).).))	chr16:2205921-2206171(+)$1	1	84	119	14.7187
.(((((..((((((........))))))))))).)	chr13:92003811-92004024(+)$1	1	106	141	15.9179
((...((..(((((........)))))))..))))	chr5:167987911-167988163(-)$1	1	130	165	15.6054
..((((((((((((........)))))).))))))	chr15:93426373-93426633(+)$1	1	211	246	15.1054
((.(((.(((.(((........))))))..))).)	chr1:27929158-27929416(-)$1	1	45	80	17.2849
.(((((...(((((........)))))...)))))	chr18:51884588-51884856(+)$1	1	228	263	15.9378
((.....((((..(........)..))))...)))	chr16:89042842-89043143(-)$1	1	61	96	14.6184
((((...(((((..........))))).)))))))	chr6:31774517-31774803(-)$1	1	21	56	13.3505
(((((..(...((((........)))).)..))))	chr14:102247819-102248078(+)$1	1	108	143	15.0258
(.((...((((((..........))))))..)).)	chr6:5000868-5001163(-)$1	1	71	106	11.9682
(..(((..((((((........))..))))))).)	chr1:227161667-227161913(+)$1	1	25	60	14.9811
(((((..((((((..........))))))..))))	chr22:49920706-49920913(-)$1	1	47	82	13.5582
(((((..((((..............))))..))))	chr7:1065449-1065695(-)$1	1	69	104	13.9300

#PSSM
d : 0.14	e : 0.14	[ : 0.11	f : 0.11	" : 0.07	i : 0.07	g : 0.07	b : 0.05	c : 0.03	= : 0.03	: : 0.03	! : 0.01	$ : 0.01	) : 0.01	h : 0.01	a : 0.01	
e : 0.22	d : 0.16	f : 0.09	c : 0.09	" : 0.07	[ : 0.07	g : 0.07	! : 0.05	b : 0.05	i : 0.05	= : 0.03	
e : 0.22	d : 0.14	f : 0.11	c : 0.11	" : 0.07	g : 0.07	i : 0.05	= : 0.05	! : 0.05	b : 0.03	[ : 0.03	$ : 0.01	
e : 0.22	f : 0.14	c : 0.12	d : 0.11	! : 0.07	g : 0.07	[ : 0.05	i : 0.05	= : 0.05	b : 0.03	" : 0.01	$ : 0.01	
e : 0.16	f : 0.14	[ : 0.11	" : 0.11	c : 0.09	! : 0.07	g : 0.07	d : 0.05	i : 0.05	= : 0.03	$ : 0.03	b : 0.01	# : 0.01	
e : 0.20	f : 0.12	c : 0.11	" : 0.11	! : 0.09	a : 0.07	g : 0.05	$ : 0.05	[ : 0.03	b : 0.03	= : 0.03	d : 0.01	i : 0.01	# : 0.01	
! : 0.20	" : 0.14	e : 0.12	[ : 0.11	c : 0.09	g : 0.07	f : 0.07	b : 0.05	$ : 0.05	= : 0.01	i : 0.01	# : 0.01	
! : 0.14	e : 0.14	f : 0.12	c : 0.09	[ : 0.07	b : 0.07	g : 0.07	a : 0.05	" : 0.05	d : 0.05	$ : 0.03	= : 0.01	i : 0.01	# : 0.01	
f : 0.20	e : 0.14	b : 0.12	c : 0.09	d : 0.09	" : 0.07	! : 0.07	g : 0.07	$ : 0.03	= : 0.01	# : 0.01	i : 0.01	[ : 0.01	
e : 0.20	f : 0.16	! : 0.11	b : 0.09	c : 0.09	d : 0.09	g : 0.07	[ : 0.03	" : 0.03	# : 0.03	= : 0.01	$ : 0.01	i : 0.01	
[ : 0.16	e : 0.16	d : 0.16	f : 0.14	c : 0.07	g : 0.07	! : 0.05	" : 0.03	# : 0.03	b : 0.03	= : 0.01	i : 0.01	
c : 0.31	e : 0.16	f : 0.14	d : 0.12	[ : 0.05	# : 0.03	g : 0.03	b : 0.03	= : 0.01	i : 0.01	! : 0.01	w : 0.01	
c : 0.29	f : 0.14	b : 0.12	e : 0.11	d : 0.09	[ : 0.05	g : 0.03	s : 0.03	# : 0.01	= : 0.01	i : 0.01	! : 0.01	w : 0.01	
c : 0.27	b : 0.12	s : 0.11	a : 0.09	d : 0.09	f : 0.09	e : 0.07	r : 0.03	t : 0.01	g : 0.01	i : 0.01	q : 0.01	w : 0.01	
q : 0.66	r : 0.11	s : 0.11	w : 0.03	b : 0.01	e : 0.01	t : 0.01	d : 0.01	
q : 0.70	r : 0.12	s : 0.11	w : 0.03	t : 0.01	
q : 0.70	r : 0.12	s : 0.11	w : 0.03	t : 0.01	
q : 0.70	r : 0.12	s : 0.11	w : 0.03	t : 0.01	
q : 0.70	r : 0.12	s : 0.11	w : 0.03	t : 0.01	
q : 0.70	r : 0.12	s : 0.11	w : 0.03	t : 0.01	
q : 0.70	r : 0.12	s : 0.11	w : 0.03	t : 0.01	
q : 0.68	r : 0.12	s : 0.11	w : 0.03	t : 0.01	b : 0.01	
c : 0.25	b : 0.11	e : 0.11	r : 0.09	a : 0.09	d : 0.07	s : 0.07	f : 0.07	q : 0.03	w : 0.03	t : 0.01	i : 0.01	
c : 0.29	f : 0.14	b : 0.12	e : 0.11	d : 0.09	] : 0.05	4 : 0.03	w : 0.03	r : 0.01	t : 0.01	i : 0.01	g : 0.01	2 : 0.01	
c : 0.29	e : 0.16	f : 0.14	d : 0.11	] : 0.05	b : 0.03	4 : 0.03	w : 0.03	2 : 0.03	= : 0.01	3 : 0.01	i : 0.01	g : 0.01	
] : 0.16	e : 0.16	d : 0.14	f : 0.14	2 : 0.09	c : 0.07	b : 0.05	4 : 0.03	3 : 0.03	= : 0.01	w : 0.01	i : 0.01	g : 0.01	
e : 0.22	f : 0.14	b : 0.11	2 : 0.09	d : 0.09	c : 0.07	3 : 0.05	4 : 0.05	] : 0.03	= : 0.03	w : 0.01	6 : 0.01	i : 0.01	g : 0.01	
f : 0.20	e : 0.12	b : 0.11	c : 0.09	3 : 0.07	4 : 0.07	] : 0.07	d : 0.07	g : 0.05	= : 0.03	2 : 0.01	w : 0.01	6 : 0.01	i : 0.01	
e : 0.14	f : 0.14	] : 0.09	b : 0.09	g : 0.07	4 : 0.07	d : 0.07	2 : 0.05	c : 0.05	3 : 0.05	= : 0.05	a : 0.03	6 : 0.01	i : 0.01	
2 : 0.24	f : 0.11	e : 0.11	g : 0.09	3 : 0.09	4 : 0.07	c : 0.05	b : 0.05	= : 0.05	] : 0.03	d : 0.03	6 : 0.01	i : 0.01	
2 : 0.18	e : 0.16	f : 0.12	c : 0.09	] : 0.07	g : 0.07	4 : 0.05	= : 0.05	3 : 0.05	d : 0.03	b : 0.03	6 : 0.01	i : 0.01	
e : 0.18	c : 0.16	f : 0.14	g : 0.11	i : 0.05	a : 0.05	= : 0.05	3 : 0.05	d : 0.03	b : 0.03	2 : 0.03	6 : 0.01	F : 0.01	] : 0.01	
e : 0.20	c : 0.16	f : 0.14	g : 0.11	] : 0.09	i : 0.05	= : 0.05	2 : 0.05	d : 0.03	3 : 0.03	F : 0.01	b : 0.01	
e : 0.20	c : 0.14	f : 0.11	g : 0.11	] : 0.09	d : 0.07	i : 0.05	= : 0.05	3 : 0.05	5 : 0.01	G : 0.01	a : 0.01	F : 0.01	2 : 0.01	
e : 0.22	d : 0.14	f : 0.09	c : 0.09	g : 0.07	i : 0.05	= : 0.05	3 : 0.05	2 : 0.03	b : 0.03	] : 0.01	5 : 0.01	G : 0.01	9 : 0.01	h : 0.01	F : 0.01	: : 0.01	

#score	796.5244482798686
#seq	54
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_transcript_m2_run2.txt

#BEAR
dddd[iiiiiiiiirrrrrrrrriiiiiiiii]ddddc	chr15:99329097-99329349(+)$1	252	82	120	10.7740
ddd[ccc!!ccc[ddddllldddd22ccc]ccc]dddd	chr20:19746711-19747007(+)$1	296	190	228	12.1405
ccc[a[cccccc[eeeeennnnneeeee]ccc]ccc]a	chr19:2342790-2343052(+)$1	262	83	121	11.5573
cc[ccc[bb[bb[eeeeellleeeee]bb]bb]ccc]c	chr1:153918131-153918375(-)$1	244	80	118	10.3866
ddd[ffffff[eeeeeooooooeeeee333ffffff22	chr5:133335971-133336266(-)$1	295	229	267	12.4168
!bb[eeeee####cccooooooccc]eeeeebb22ddd	chr19:35534803-35535054(+)$1	251	187	225	12.2282
ddd[ccc$$$$$ddddoooooodddd333ccc]dddd:	chr15:79152859-79153063(+)$1	204	71	109	12.7269
"bb[dddd[eeeeecccnnnnnccc22eeeee]ddddb	chr17:7080664-7080911(-)$1	247	40	78	10.9210
fffff[ccc!!a[eeeeemmmmeeeee333a22ccc]f	chr2:102793811-102794065(+)$1	254	155	193	11.2180
dddd"""a[cccccclllccc]ccc]a]dddd]ccc33	chr16:88919941-88920215(-)$1	274	21	59	11.1917
==$$$$$dddd[ddddoooooodddd]dddd22=====	chr16:87220482-87220787(-)$1	305	241	279	11.9750
ddd####cccbb[cccmmmmcccbb]cccdddddddd]	chr2:27312532-27312815(+)$1	283	128	166	10.6253
]bb]eeeeegggggggoooooogggggggeeeee[ccc	chr2:236452098-236452365(+)$1	267	188	226	11.3840
fff[dddd[ccc[a[cccmmmmccc]a]ccc22dddd]	chr21:46899356-46899671(+)$1	315	218	256	11.8516
ccc"""bb"""ccc[aooooooa]ccc22bb22ccc33	chr20:61442962-61443227(+)$1	265	23	61	13.6112
dddggggggg!!ddddoooooodddd333ggggggg]d	chr6:1892393-1892670(-)$1	277	236	274	14.0334
bbccc[ffffff[addddllldddd]a]ffffffcccF	chrX:153672912-153673163(+)$1	251	168	206	11.0282
b[ccc!!ccc[ffffffmmmmffffff]ccc22ccc]b	chr16:84115808-84116082(-)$1	274	192	230	10.7007
ddffffff[ffffffcccmmmmccc]ffffff]fffff	chr17:80847030-80847316(+)$1	286	118	156	10.5980
eeeeggggggg!!ddddmmmmdddd]ggggggg>>>>>	chr15:75953268-75953549(+)$1	281	174	212	10.6672
fffff"""ccc!!cccannnnna]ccc22ccc]fffff	chr19:39440940-39441183(-)$1	243	149	187	11.8255
dddd!!bb"""ddddoooooodddd]bbdddd]a]bb]	chr19:2806420-2806712(+)$1	292	231	269	11.8715
eeeeee[dddd!!cccooooooccc22dddd]eeeee:	chr14:54421348-54421617(-)$1	269	150	188	12.5704
ffccc[bb[ccc[cccooooooccc]ccc]bb]ccc22	chr7:99924673-99924937(-)$1	264	104	142	15.4443
!!dddd!!eeeeeddddmmmmdddd]eeeee]dddd22	chr20:3451908-3452141(+)$1	233	144	182	10.6101
[ccc"""bb!!eeeeeooooooeeeee22bb22ccc]b	chr17:75085293-75085505(+)$1	212	40	78	12.8728
!dddd!!ffffffcccmmmmccc333ffffff22dddd	chr17:80865695-80865981(+)$1	286	6	44	11.1180
d[ccc!!ffffff[cccmmmmccc]ffffff22ccc22	chr10:121356083-121356294(-)$1	211	47	85	11.6917
ggggggg[eeeee[ddddllldddd22eeeee]ggggg	chr11:2152297-2152513(-)$1	216	4	42	11.2531
ccc22affffff[ccc[aooooooa]ccc333ffffff	chr20:43032449-43032724(+)$1	275	146	184	11.3038
fffff[eeeee!!cccooooooccc22eeeee]fffff	chr11:67800898-67801168(+)$1	270	112	150	13.7125
[dddd[bb[ccc[cccmmmmccc22ccc]bb]dddd]f	chr14:71905439-71905722(+)$1	283	119	157	10.5634
gggggggccc[ffffffnnnnnffffff]ccc22gggg	chr14:38063801-38064090(-)$1	289	79	117	10.5905
h[ccc[eeeeeffffffooooooffffff]eeeeeccc	chr7:157660332-157660583(-)$1	251	86	124	11.4965
[ccc[ccc!!cccddddoooooodddd]ccc22ccc]c	chr11:3708018-3708309(-)$1	291	105	143	13.9768
4eeeee:dddd!!cccooooooccc22dddd:======	chr14:23447264-23447542(-)$1	278	62	100	11.6607
eeeee[ffffff[ddddllldddd22ffffff]eeeee	chr9:130318574-130318844(-)$1	270	125	163	11.3811
Eiiiiiiiiibb[cccooooooccc]bb]iiiiiiiii	chr7:55617792-55618017(-)$1	225	185	223	13.1297
22eeeee:ccc!!cccooooooccccccbb[ccc[eee	chr17:7379018-7379271(-)$1	253	148	186	11.3020
[dddd[cccccc[cccooooooccc]ccc]ccc]dddd	chr1:91437466-91437727(-)$1	261	84	122	15.6579
fdddd[ccc[dddd[ccclllcccdddd]ccc]dddd:	chrX:20204631-20204879(-)$1	248	25	63	11.1804
:ggggggg[bba[ddddoooooodddd]a]bb]ggggg	chr20:60703588-60703850(+)$1	262	172	210	11.9144
d[a[a[dddd[ccc[bboooooobb]ccc]dddda]ad	chr14:95079001-95079240(+)$1	239	78	116	11.7217
!dddd[a"""ffffffccclllccc]ffffff22a]dd	chr17:70117925-70118173(+)$1	248	128	166	11.4235
gggg[ccceeeeeeeeeellleeeee]eeeee]ccc44	chr19:40790849-40791110(-)$1	261	135	173	10.9881
[eeeee"""gggggggooooooggggggg]eeeee]bb	chr17:72440251-72440486(+)$1	235	82	120	12.8994
cc[ffffff[eeeeeooooooeeeeeffffff]ccc==	chr20:62687769-62688036(+)$1	267	114	152	12.0686
ccc!!ccc[bb!!cccooooooccc22bb]cccccc]a	chr3:142242798-142243087(-)$1	289	114	152	14.6684
[dddd[dddd"""cccnnnnnccc]dddd]ddddbb]c	chr9:96050326-96050584(+)$1	258	214	252	10.6041
eeee!!ggggggg!!bbnnnnnbb]ggggggg]eeeee	chr8:59355468-59355764(+)$1	296	68	106	10.8316
"""dddd[gggggggbbnnnnnbb]ggggggg]dddd2	chr16:87462119-87462366(-)$1	247	81	119	10.2041
[eeeee[ccc[ddddoooooodddd]ccc]eeeee]bb	chr9:139726336-139726561(+)$1	225	4	42	12.4760
ggg[ccc!!dddd[ddddllldddd]dddd22ccc444	chr11:456670-456951(+)$1	281	115	153	10.8482
dddd[ccc!!bb!!cccmmmmccc22bb22ccc]dddd	chr2:26601972-26602229(+)$1	257	11	49	10.8517
!eeeeeffffff[cccooooooccc]ffffff]eeeee	chr8:144679096-144679379(-)$1	283	87	125	14.5426
dddd$$$$$ccc[cccooooooccc]ccc4444dddd6	chr4:124062463-124062715(+)$1	252	176	214	14.3690

#otherMatches

#Seq PSSM
GUUGCGGCUGUCUAAUCCAAUUAUGGAUGGUCCCAGCG	chr15:99329097-99329349(+)$1	252	82	120	10.7740
UAAUGUCUUUCCCUAAACAGUUUACAGGAUGACCUUAG	chr20:19746711-19747007(+)$1	296	190	228	12.1405
UCCACCGUCCUGGCCCCACCAUCUGGGGACAGCGACCG	chr19:2342790-2343052(+)$1	262	83	121	11.5573
GGAGGCCCCGGUGCGCAGGUCCUGCGGAUGGGUGCCAC	chr1:153918131-153918375(-)$1	244	80	118	10.3866
GCUGCCAGGGUGUUUCAAAAUAGAAGCUACCCCUGGAA	chr5:133335971-133336266(-)$1	295	229	267	12.4168
aacugggggugauggcaauggcgccuuccucgugaaca	chr19:35534803-35535054(+)$1	251	187	225	12.2282
gggacucuuaaucccagggucguggguucgagccccac	chr15:79152859-79153063(+)$1	204	71	109	12.7269
CGGUGGGAUGGGGCGGCUCAGCGCUUAGCCCCCUUCCC	chr17:7080664-7080911(-)$1	247	40	78	10.9210
GGAGACAUAUUCUUGGAGAACUUUCCAUCUGCUUGUAU	chr2:102793811-102794065(+)$1	254	155	193	11.2180
GGCCUUUCACUGACCCACGGUCCAGCGCGGCCUGGCUU	chr16:88919941-88920215(-)$1	274	21	59	11.1917
CCAGAUGUGCAAGGUUGAGGAAAGCUCUGUGAGGGUCG	chr16:87220482-87220787(-)$1	305	241	279	11.9750
AGGCAGUUGGGGACUCUUGGGAGCCGCCACCUGGAGCU	chr2:27312532-27312815(+)$1	283	128	166	10.6253
GUGAGGGCAGGUGGGGGGUUGACCUCACUCUCCAAGGA	chr2:236452098-236452365(+)$1	267	188	226	11.3840
GAACCUGCUGUGACCUCCCGAGGGAUGCUGCCCGCAGC	chr21:46899356-46899671(+)$1	315	218	256	11.8516
ACCCCCACCCCGGCGCAGAACAGGGCCACGUCAGGUUU	chr20:61442962-61443227(+)$1	265	23	61	13.6112
UAUAUAUUUCAGUCUCCCCCGAGAGAAAAGAAAUGUCA	chr6:1892393-1892670(-)$1	277	236	274	14.0334
AGGCCUCUGCCCUGGUCCUAUGGACACCGGGCAGGGCG	chrX:153672912-153673163(+)$1	251	168	206	11.0282
CCCAGCCAGGCGGUGUCCCAUGGCAUCUUCUUCCUGUG	chr16:84115808-84116082(-)$1	274	192	230	10.7007
AGGGCGGCACGUGGUGCCAGUUGGUGACCAUGAGCUGC	chr17:80847030-80847316(+)$1	286	118	156	10.5980
UCUGGGCCAGGCUGCCUCUGAAGGCCCCUGGCUGAACC	chr15:75953268-75953549(+)$1	281	174	212	10.6672
GUAGGGAGGGGGUGGCCUGGCUGCGCUGACCCGCCUAC	chr19:39440940-39441183(-)$1	243	149	187	11.8255
CGGACAGCCCCUGGUCCCCAUACCACGUUCCGUGUGAG	chr19:2806420-2806712(+)$1	292	231	269	11.8715
CGGCCCUGCUGAACGCUGAGUUGCGCCUAGUCGGGUUU	chr14:54421348-54421617(-)$1	269	150	188	12.5704
uuggauccuggcuccugccuuggggugucugguucuua	chr7:99924673-99924937(-)$1	264	104	142	15.4443
AAUGUGACCGGCCCUGUGUCAACGGCGGUCGCUGCAAC	chr20:3451908-3452141(+)$1	233	144	182	10.6101
GACCUCAGCAGGGCAUCCAGGUAUGUCAAGCAUGGUGA	chr17:75085293-75085505(+)$1	212	40	78	12.8728
GUGUGCAGCCUCUGGGUGUACCCUCAGGAGGCAUCACA	chr17:80865695-80865981(+)$1	286	6	44	11.1180
GUGACCUGGCGGGUCGCGCCUGCGCUCUGCCCUGUUUC	chr10:121356083-121356294(-)$1	211	47	85	11.6917
CUGUCUGUGCCCUGCCUCUCAGAGGAGGGGGCUCAGAU	chr11:2152297-2152513(-)$1	216	4	42	11.2531
GAGGAGAGGCCGAGGGAGAAAGGGCACCCACGUGGCUU	chr20:43032449-43032724(+)$1	275	146	184	11.3038
GGUGUGACCCCUGGGCCUCUGAGCCAUGGGGUGACACC	chr11:67800898-67801168(+)$1	270	112	150	13.7125
AGCUUACUUGCCUCCCUCUUGGGCUGGUUGGAAAGCCG	chr14:71905439-71905722(+)$1	283	119	157	10.5634
GGCGGGCCGGGGGCGCCUUCUCGGUGCCACCGCUGCCC	chr14:38063801-38064090(-)$1	289	79	117	10.5905
GAAGGAGUCUCCCUGGACUGGAUUCUGGGAGGGACCCU	chr7:157660332-157660583(-)$1	251	86	124	11.4965
uuggagucucacccugucagagugcagugguaugaucu	chr11:3708018-3708309(-)$1	291	105	143	13.9768
AGGAGGAGAGCUUGUGCCUCUUCAUUUGCUCACAGAGC	chr14:23447264-23447542(-)$1	278	62	100	11.6607
CAUCCUGGGAGCAUGGGGAUCCCAAAGCUCUCUGGAUG	chr9:130318574-130318844(-)$1	270	125	163	11.3811
AGGAAAUGCUGUUCCUUUUCCCAGGCGCUGGCAUUUCC	chr7:55617792-55618017(-)$1	225	185	223	13.1297
gcgaccucgaguaagguauaucccucucugagccucgg	chr17:7379018-7379271(-)$1	253	148	186	11.3020
ugcagugguguaaugacuugguucacugcaaccucugc	chr1:91437466-91437727(-)$1	261	84	122	15.6579
ccucuaaucccagcacuuugagaggcugaggugggaga	chrX:20204631-20204879(-)$1	248	25	63	11.1804
AGAAAGUGGCCCGGGUGCAUUCCCGCCAGAGGACACUU	chr20:60703588-60703850(+)$1	262	172	210	11.9144
GACCCUCAGGGAAGAGGUGCUGUCCCCUUGCCUGGAGC	chr14:95079001-95079240(+)$1	239	78	116	11.7217
CGCCCGGGAGUUGCCGUUCCGGGAGCCGGCGGGAUGGG	chr17:70117925-70118173(+)$1	248	128	166	11.4235
CUCGAGCCCCUCCUUCAGGAGCUGAGUGGGGGUGGCCG	chr19:40790849-40791110(-)$1	261	135	173	10.9881
UGCUGGGUGAGCUCUCCCUGGUGGGAGCUGCCAGCUUU	chr17:72440251-72440486(+)$1	235	82	120	12.8994
GGGUGGGGGCUCCUGGGGCUGCAGGAUCCCCAGCCCCC	chr20:62687769-62688036(+)$1	267	114	152	12.0686
GCUUUUGAAAGGUUGCCAAGAUGCAAACUCUCAAGCUC	chr3:142242798-142243087(-)$1	289	114	152	14.6684
GCUUCUGACCAUACCAAAGACUGGGGGUCUGAAGGCUU	chr9:96050326-96050584(+)$1	258	214	252	10.6041
UUUAUCUCAGCUCCUCAACAGCUGUGAGCUGACUGAAG	chr8:59355468-59355764(+)$1	296	68	106	10.8316
CAGGGGUGAUGCUCCCUGCCAUGGUGGGGCAUGGCUCA	chr16:87462119-87462366(-)$1	247	81	119	10.2041
GACCCUGCCCGGUGCUCCGGUGUGCGGGGGAGGGUGCU	chr9:139726336-139726561(+)$1	225	4	42	12.4760
AGUACUGAAGGGCCCCACGGUGUGGAGCUCAGCAGGAA	chr11:456670-456951(+)$1	281	115	153	10.8482
uagccgggugugguggcguaugccuguaaucccagcua	chr2:26601972-26602229(+)$1	257	11	49	10.8517
ACGGGGGCGCCGGGAGCACUGUCUCACGGCGCAUCCCG	chr8:144679096-144679379(-)$1	283	87	125	14.5426
aacaaaaaaACAGUGUuacucuauaguguacuguguug	chr4:124062463-124062715(+)$1	252	176	214	14.3690

#DB
((((.(((((((((.........))))))))).)))))	chr15:99329097-99329349(+)$1	1	82	120	10.7740
(((.(((..(((.((((...))))..))).))).))))	chr20:19746711-19747007(+)$1	1	190	228	12.1405
(((.(.((((((.(((((.....))))).))).))).)	chr19:2342790-2343052(+)$1	1	83	121	11.5573
((.(((.((.((.(((((...))))).)).)).))).)	chr1:153918131-153918375(-)$1	1	80	118	10.3866
(((.((((((.(((((......)))))...))))))..	chr5:133335971-133336266(-)$1	1	229	267	12.4168
.((.(((((....(((......))).)))))))..)))	chr19:35534803-35535054(+)$1	1	187	225	12.2282
(((.(((.....((((......))))...))).)))).	chr15:79152859-79153063(+)$1	1	71	109	12.7269
.((.((((.((((((((.....)))..))))).)))))	chr17:7080664-7080911(-)$1	1	40	78	10.9210
(((((.(((..(.(((((....)))))...)..))).)	chr2:102793811-102794065(+)$1	1	155	193	11.2180
((((...(.((((((...))).))).).)))).)))..	chr16:88919941-88920215(-)$1	1	21	59	11.1917
((.....((((.((((......)))).))))..)))))	chr16:87220482-87220787(-)$1	1	241	279	11.9750
(((....(((((.(((....))))).))))))))))).	chr2:27312532-27312815(+)$1	1	128	166	10.6253
.)).)))))(((((((......)))))))(((((.(((	chr2:236452098-236452365(+)$1	1	188	226	11.3840
(((.((((.(((.(.(((....))).).)))..)))).	chr21:46899356-46899671(+)$1	1	218	256	11.8516
(((...((...(((.(......).)))..))..)))..	chr20:61442962-61443227(+)$1	1	23	61	13.6112
((((((((((..((((......))))...))))))).)	chr6:1892393-1892670(-)$1	1	236	274	14.0334
))(((.((((((.(((((...)))).).))))))))))	chrX:153672912-153673163(+)$1	1	168	206	11.0282
(.(((..(((.((((((....)))))).)))..))).)	chr16:84115808-84116082(-)$1	1	192	230	10.7007
((((((((.(((((((((....))).)))))).)))))	chr17:80847030-80847316(+)$1	1	118	156	10.5980
(((((((((((..((((....)))).))))))).....	chr15:75953268-75953549(+)$1	1	174	212	10.6672
(((((...(((..((((.....).)))..))).)))))	chr19:39440940-39441183(-)$1	1	149	187	11.8255
((((..((...((((......)))).)))))).).)).	chr19:2806420-2806712(+)$1	1	231	269	11.8715
)(((((.((((..(((......)))..)))).))))).	chr14:54421348-54421617(-)$1	1	150	188	12.5704
(((((.((.(((.(((......))).))).)).)))..	chr7:99924673-99924937(-)$1	1	104	142	15.4443
..((((..(((((((((....)))).))))).))))..	chr20:3451908-3452141(+)$1	1	144	182	10.6101
.(((...((..(((((......)))))..))..))).)	chr17:75085293-75085505(+)$1	1	40	78	12.8728
.((((..(((((((((....)))...))))))..))))	chr17:80865695-80865981(+)$1	1	6	44	11.1180
(.(((..((((((.(((....))).))))))..)))..	chr10:121356083-121356294(-)$1	1	47	85	11.6917
(((((((.(((((.((((...))))..))))).)))))	chr11:2152297-2152513(-)$1	1	4	42	11.2531
)))..)((((((.(((.(......).)))...))))))	chr20:43032449-43032724(+)$1	1	146	184	11.3038
(((((.(((((..(((......)))..))))).)))))	chr11:67800898-67801168(+)$1	1	112	150	13.7125
.((((.((.(((.(((....)))..))).)).)))).)	chr14:71905439-71905722(+)$1	1	119	157	10.5634
((((((((((.((((((.....)))))).)))..))))	chr14:38063801-38064090(-)$1	1	79	117	10.5905
(.(((.(((((((((((......)))))).))))))))	chr7:157660332-157660583(-)$1	1	86	124	11.4965
.(((.(((..(((((((......)))).)))..))).)	chr11:3708018-3708309(-)$1	1	105	143	13.9768
.))))).((((..(((......)))..)))).((((((	chr14:23447264-23447542(-)$1	1	62	100	11.6607
(((((.((((((.((((...))))..)))))).)))))	chr9:130318574-130318844(-)$1	1	125	163	11.3811
)(((((((((((.(((......))).)).)))))))))	chr7:55617792-55618017(-)$1	1	185	223	13.1297
..))))).(((..(((......))))))((.(((.(((	chr17:7379018-7379271(-)$1	1	148	186	11.3020
.((((.((((((.(((......))).))).))).))))	chr1:91437466-91437727(-)$1	1	84	122	15.6579
)((((.(((.((((.(((...))))))).))).)))).	chrX:20204631-20204879(-)$1	1	25	63	11.1804
.(((((((.(((.((((......)))).).)).)))))	chr20:60703588-60703850(+)$1	1	172	210	11.9144
(.(.(.((((.(((.((......)).))).))))).))	chr14:95079001-95079240(+)$1	1	78	116	11.7217
.((((.(...(((((((((...))).))))))..).))	chr17:70117925-70118173(+)$1	1	128	166	11.4235
((((.(((((((((((((...))))).))))).)))..	chr19:40790849-40791110(-)$1	1	135	173	10.9881
.(((((...(((((((......))))))).))))).))	chr17:72440251-72440486(+)$1	1	82	120	12.8994
((.((((((.(((((......))))))))))).)))))	chr20:62687769-62688036(+)$1	1	114	152	12.0686
(((..(((.((..(((......)))..)).)))))).)	chr3:142242798-142243087(-)$1	1	114	152	14.6684
.((((.((((...(((.....))).)))).)))))).)	chr9:96050326-96050584(+)$1	1	214	252	10.6041
((((..(((((((..((.....)).))))))).)))))	chr8:59355468-59355764(+)$1	1	68	106	10.8316
...((((.(((((((((.....)).))))))).)))).	chr16:87462119-87462366(-)$1	1	81	119	10.2041
.(((((.(((.((((......)))).))).))))).))	chr9:139726336-139726561(+)$1	1	4	42	12.4760
(((.(((..((((.((((...)))).))))..)))...	chr11:456670-456951(+)$1	1	115	153	10.8482
((((.(((..((..(((....)))..))..))).))))	chr2:26601972-26602229(+)$1	1	11	49	10.8517
.(((((((((((.(((......))).)))))).)))))	chr8:144679096-144679379(-)$1	1	87	125	14.5426
((((.....(((.(((......))).)))....)))).	chr4:124062463-124062715(+)$1	1	176	214	14.3690

#PSSM
d : 0.23	[ : 0.12	c : 0.10	f : 0.10	! : 0.08	e : 0.07	g : 0.07	" : 0.03	b : 0.03	= : 0.01	] : 0.01	h : 0.01	4 : 0.01	E : 0.01	2 : 0.01	: : 0.01	
d : 0.30	c : 0.14	e : 0.14	f : 0.08	g : 0.08	b : 0.07	[ : 0.07	= : 0.01	! : 0.01	i : 0.01	2 : 0.01	" : 0.01	
d : 0.30	c : 0.19	e : 0.16	f : 0.08	g : 0.08	b : 0.05	[ : 0.03	$ : 0.01	i : 0.01	a : 0.01	" : 0.01	
d : 0.23	[ : 0.16	e : 0.16	c : 0.14	f : 0.08	g : 0.08	$ : 0.01	# : 0.01	] : 0.01	" : 0.01	2 : 0.01	i : 0.01	! : 0.01	
d : 0.17	c : 0.16	e : 0.16	f : 0.10	g : 0.08	[ : 0.07	" : 0.05	! : 0.05	a : 0.03	$ : 0.03	# : 0.01	2 : 0.01	i : 0.01	
[ : 0.23	c : 0.14	e : 0.14	g : 0.08	! : 0.08	d : 0.07	" : 0.07	f : 0.05	i : 0.03	$ : 0.03	# : 0.01	a : 0.01	
c : 0.19	f : 0.12	g : 0.10	e : 0.08	d : 0.08	" : 0.07	b : 0.07	! : 0.07	[ : 0.05	i : 0.03	$ : 0.03	# : 0.01	: : 0.01	a : 0.01	
c : 0.21	f : 0.16	d : 0.12	b : 0.10	e : 0.07	g : 0.07	! : 0.05	" : 0.05	i : 0.03	$ : 0.03	[ : 0.03	a : 0.01	: : 0.01	
c : 0.17	f : 0.14	[ : 0.14	e : 0.12	d : 0.08	! : 0.07	" : 0.07	g : 0.07	i : 0.03	b : 0.03	$ : 0.03	
c : 0.24	f : 0.14	e : 0.10	d : 0.10	g : 0.10	! : 0.07	[ : 0.05	" : 0.05	i : 0.03	b : 0.03	# : 0.01	$ : 0.01	
c : 0.19	f : 0.14	e : 0.12	b : 0.10	[ : 0.08	d : 0.08	g : 0.08	! : 0.05	" : 0.05	i : 0.01	# : 0.01	$ : 0.01	
c : 0.19	f : 0.19	! : 0.14	e : 0.12	b : 0.07	g : 0.07	d : 0.07	a : 0.03	i : 0.01	# : 0.01	$ : 0.01	[ : 0.01	" : 0.01	
[ : 0.28	! : 0.14	e : 0.12	d : 0.12	f : 0.12	c : 0.07	g : 0.07	i : 0.01	# : 0.01	" : 0.01	
c : 0.35	d : 0.21	e : 0.14	f : 0.08	g : 0.05	[ : 0.05	a : 0.03	! : 0.03	i : 0.01	
c : 0.37	d : 0.24	e : 0.12	f : 0.08	[ : 0.07	g : 0.05	r : 0.01	! : 0.01	
c : 0.41	d : 0.21	e : 0.10	f : 0.07	o : 0.05	b : 0.05	g : 0.03	r : 0.01	l : 0.01	a : 0.01	
o : 0.39	d : 0.16	c : 0.12	e : 0.07	m : 0.05	f : 0.05	b : 0.05	r : 0.01	l : 0.01	a : 0.01	[ : 0.01	n : 0.01	
o : 0.46	m : 0.14	n : 0.10	e : 0.07	c : 0.07	l : 0.05	d : 0.05	r : 0.01	a : 0.01	
o : 0.48	m : 0.19	l : 0.14	n : 0.12	c : 0.03	r : 0.01	
o : 0.48	m : 0.19	l : 0.16	n : 0.12	r : 0.01	c : 0.01	
o : 0.48	m : 0.14	n : 0.12	l : 0.12	c : 0.07	d : 0.03	r : 0.01	
o : 0.42	d : 0.16	c : 0.12	n : 0.10	e : 0.05	m : 0.05	r : 0.01	] : 0.01	f : 0.01	l : 0.01	
c : 0.41	d : 0.21	e : 0.10	o : 0.08	g : 0.03	a : 0.03	f : 0.03	b : 0.03	r : 0.01	n : 0.01	
c : 0.35	d : 0.24	e : 0.12	b : 0.07	f : 0.05	g : 0.03	] : 0.03	i : 0.01	3 : 0.01	o : 0.01	2 : 0.01	
c : 0.32	d : 0.23	e : 0.12	2 : 0.07	] : 0.07	f : 0.05	b : 0.03	g : 0.03	i : 0.01	3 : 0.01	a : 0.01	
] : 0.33	2 : 0.16	e : 0.12	d : 0.12	g : 0.07	c : 0.07	f : 0.07	i : 0.01	3 : 0.01	
c : 0.21	f : 0.17	e : 0.10	2 : 0.10	g : 0.08	d : 0.08	] : 0.05	a : 0.05	b : 0.05	3 : 0.03	i : 0.01	
c : 0.17	f : 0.16	e : 0.12	] : 0.10	d : 0.10	b : 0.08	g : 0.08	3 : 0.07	2 : 0.05	i : 0.01	
c : 0.19	f : 0.16	d : 0.12	e : 0.10	] : 0.08	g : 0.08	3 : 0.07	2 : 0.07	b : 0.05	i : 0.01	a : 0.01	
] : 0.19	c : 0.14	f : 0.14	e : 0.12	d : 0.12	b : 0.07	g : 0.07	3 : 0.05	i : 0.03	2 : 0.01	4 : 0.01	
c : 0.21	e : 0.17	f : 0.16	d : 0.14	b : 0.10	g : 0.07	i : 0.03	a : 0.01	3 : 0.01	[ : 0.01	2 : 0.01	4 : 0.01	
c : 0.17	2 : 0.16	f : 0.14	e : 0.14	d : 0.08	b : 0.07	g : 0.07	] : 0.05	i : 0.03	3 : 0.01	: : 0.01	4 : 0.01	
] : 0.35	2 : 0.19	c : 0.10	d : 0.08	e : 0.08	f : 0.05	g : 0.03	b : 0.01	= : 0.01	i : 0.01	4 : 0.01	
c : 0.26	d : 0.21	e : 0.14	f : 0.10	2 : 0.07	] : 0.05	g : 0.05	= : 0.03	> : 0.01	a : 0.01	i : 0.01	
c : 0.26	d : 0.24	e : 0.12	f : 0.08	g : 0.07	= : 0.03	[ : 0.03	a : 0.03	2 : 0.01	> : 0.01	] : 0.01	i : 0.01	b : 0.01	
c : 0.28	d : 0.26	f : 0.08	e : 0.08	g : 0.07	] : 0.07	= : 0.03	b : 0.03	> : 0.01	i : 0.01	4 : 0.01	
d : 0.24	] : 0.17	e : 0.08	2 : 0.07	f : 0.07	= : 0.05	c : 0.05	b : 0.05	g : 0.05	3 : 0.03	4 : 0.03	> : 0.01	i : 0.01	a : 0.01	
d : 0.14	c : 0.10	f : 0.10	2 : 0.08	b : 0.08	e : 0.07	: : 0.05	= : 0.05	] : 0.05	g : 0.05	a : 0.03	3 : 0.03	4 : 0.03	F : 0.01	> : 0.01	i : 0.01	6 : 0.01	

#score	667.6628093390516
#seq	56
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF215XPR_WDR3_transcript_m1_run1.txt

#BEAR
iiiiiiccc"""gggggggcccooooooccc]gggggggc	chr20:26189238-26189481(-)$1	243	72	112	17.2515
[hhhhhhhh!!ffffff[eeeeellleeeee]ffffff]h	chr17:19015769-19016004(-)$1	235	65	105	33.7999
[hhhhhhhh!!ffffff[eeeeellleeeee]ffffff]h	chr17:19091288-19091524(+)$1	236	50	90	33.7999
[hhhhhhhh!!ffffff[eeeeellleeeee]ffffff]h	chr17:19093390-19093598(-)$1	208	50	90	33.7999
[hhhhhhhh!!ffffff[eeeeellleeeee]ffffff]h	chr17:19015840-19016048(-)$1	208	109	149	33.7999
[hhhhhhhh!!ffffff[eeeeellleeeee]ffffff]h	chr17:19091334-19091541(+)$1	207	4	44	33.7999
iiiiiiibb[gggggggeeeeemmmmeeeee22ggggggg	chr20:26189853-26190144(-)$1	291	242	282	20.5515
[hhhhhhhh!!ffffff[eeeeellleeeee]ffffff]h	chr17:19093316-19093590(-)$1	274	42	82	33.7999
=========!!ccc"""eeeeemmmmeeeee4444ccc]=	chr7:98479277-98479528(+)$1	251	85	125	19.5214
[hhhhhhhh!!ffffff[eeeeellleeeee]ffffff]h	chr17:19091324-19091534(+)$1	210	14	54	33.7999
[hhhhhhhh!!ffffff[eeeeellleeeee]ffffff]h	chr17:19015804-19016040(-)$1	236	101	141	33.7999

#otherMatches

#Seq PSSM
ACCCUCCUCAGCUUCCCCCUCGACGGGGUGACGGGGGGAG	chr20:26189238-26189481(-)$1	243	72	112	17.2515
uuucagggaucauuucuauaguguguuacuagagaaguuu	chr17:19015769-19016004(-)$1	235	65	105	33.7999
uuucagggaucauuucuauaguguguuacuagagaaguuu	chr17:19091288-19091524(+)$1	236	50	90	33.7999
uuucagggaucauuucuauaguguguuacuagagaaguuu	chr17:19093390-19093598(-)$1	208	50	90	33.7999
uuucagggaucauuucuauaguguguuacuagagaaguuu	chr17:19015840-19016048(-)$1	208	109	149	33.7999
uuucagggaucauuucuauaguguguuacuagagaaguuu	chr17:19091334-19091541(+)$1	207	4	44	33.7999
CGGGUGCGCACGGGCCCUGUGAGCGAUCGCGGUGGGCUUG	chr20:26189853-26190144(-)$1	291	242	282	20.5515
uuucagggaucauuucuauaguguguuacuagagaaguuu	chr17:19093316-19093590(-)$1	274	42	82	33.7999
CguguguguguuuguguguguguguauaugCUUGUCAGUG	chr7:98479277-98479528(+)$1	251	85	125	19.5214
uuucagggaucauuucuauaguguguuacuagagaaguuu	chr17:19091324-19091534(+)$1	210	14	54	33.7999
uuucagggaucauuucuauaguguguuacuagagaaguuu	chr17:19015804-19016040(-)$1	236	101	141	33.7999

#DB
(((((((((...((((((((((......))).))))))))	chr20:26189238-26189481(-)$1	1	72	112	17.2515
.((((((((..((((((.(((((...))))).)))))).)	chr17:19015769-19016004(-)$1	1	65	105	33.7999
.((((((((..((((((.(((((...))))).)))))).)	chr17:19091288-19091524(+)$1	1	50	90	33.7999
.((((((((..((((((.(((((...))))).)))))).)	chr17:19093390-19093598(-)$1	1	50	90	33.7999
.((((((((..((((((.(((((...))))).)))))).)	chr17:19015840-19016048(-)$1	1	109	149	33.7999
.((((((((..((((((.(((((...))))).)))))).)	chr17:19091334-19091541(+)$1	1	4	44	33.7999
)))))))((.((((((((((((....)))))..)))))))	chr20:26189853-26190144(-)$1	1	242	282	20.5515
.((((((((..((((((.(((((...))))).)))))).)	chr17:19093316-19093590(-)$1	1	42	82	33.7999
(((((((((..(((...(((((....)))))....))).)	chr7:98479277-98479528(+)$1	1	85	125	19.5214
.((((((((..((((((.(((((...))))).)))))).)	chr17:19091324-19091534(+)$1	1	14	54	33.7999
.((((((((..((((((.(((((...))))).)))))).)	chr17:19015804-19016040(-)$1	1	101	141	33.7999

#PSSM
[ : 0.72	i : 0.18	= : 0.09	
h : 0.72	i : 0.18	= : 0.09	
h : 0.72	i : 0.18	= : 0.09	
h : 0.72	i : 0.18	= : 0.09	
h : 0.72	i : 0.18	= : 0.09	
h : 0.72	i : 0.18	= : 0.09	
h : 0.72	c : 0.09	i : 0.09	= : 0.09	
h : 0.72	c : 0.09	b : 0.09	= : 0.09	
h : 0.72	c : 0.09	b : 0.09	= : 0.09	
! : 0.81	" : 0.09	[ : 0.09	
! : 0.81	" : 0.09	g : 0.09	
f : 0.72	" : 0.09	g : 0.09	c : 0.09	
f : 0.72	g : 0.18	c : 0.09	
f : 0.72	g : 0.18	c : 0.09	
f : 0.72	g : 0.18	" : 0.09	
f : 0.72	g : 0.18	" : 0.09	
f : 0.72	g : 0.18	" : 0.09	
[ : 0.72	e : 0.18	g : 0.09	
e : 0.90	g : 0.09	
e : 0.90	c : 0.09	
e : 0.90	c : 0.09	
e : 0.90	c : 0.09	
e : 0.72	m : 0.18	o : 0.09	
l : 0.72	m : 0.18	o : 0.09	
l : 0.72	m : 0.18	o : 0.09	
l : 0.72	m : 0.18	o : 0.09	
e : 0.90	o : 0.09	
e : 0.90	o : 0.09	
e : 0.90	c : 0.09	
e : 0.90	c : 0.09	
e : 0.90	c : 0.09	
] : 0.81	2 : 0.09	4 : 0.09	
f : 0.72	g : 0.09	2 : 0.09	4 : 0.09	
f : 0.72	g : 0.18	4 : 0.09	
f : 0.72	g : 0.18	4 : 0.09	
f : 0.72	g : 0.18	c : 0.09	
f : 0.72	g : 0.18	c : 0.09	
f : 0.72	g : 0.18	c : 0.09	
] : 0.81	g : 0.18	
h : 0.72	c : 0.09	g : 0.09	= : 0.09	

#score	327.72420635230947
#seq	11
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_CDS_m3_run1.txt

#BEAR
c[cccooooooccccc	chr20:48741589-48741815(-)$1	226	149	165	11.6889
##cccooooooccc22	chr7:66409952-66410234(+)$1	282	145	161	11.9789
:ddddooooooddddb	chr6:34212788-34213017(+)$1	229	123	139	9.5408
::cccoooooocccdd	chr1:150788648-150788936(-)$1	288	185	201	9.8160
##cccooooooccc33	chr19:39964792-39965096(+)$1	304	253	269	12.3865
iiiiiooooooiiiii	chr19:3985277-3985489(-)$1	212	72	88	10.4127
##cccooooooccc22	chr16:3072778-3073075(-)$1	297	175	191	11.9789
b[cccooooooccc]b	chr22:41924382-41924631(+)$1	249	204	220	11.4764
%ddddoooooodddd2	chr5:139002852-139003081(+)$1	229	80	96	10.2914
""cccooooooccc]f	chr16:58231493-58231791(-)$1	298	151	167	11.9453
%%cccooooooccc55	chr2:136432837-136433152(+)$1	315	52	68	9.7967
eeeeeooooooeeeee	chr15:57543449-57543717(+)$1	268	122	138	9.7070
%%cccooooooccc55	chr2:136432801-136433033(+)$1	232	88	104	9.7967
::cccoooooocccee	chr7:77256434-77256701(+)$1	267	124	140	9.8176
eeeeeooooooeeeee	chrX:153628107-153628352(+)$1	245	108	124	9.7070
e[cccoooooocccee	chr20:33122353-33122670(+)$1	317	270	286	11.5558
eeeeeooooooeeeee	chr12:7044955-7045222(+)$1	267	128	144	9.7070
b[cccooooooccc]b	chr6:109697182-109697415(-)$1	233	27	43	11.4764
c[cccooooooccc]c	chr1:16262600-16262862(+)$1	262	129	145	11.9046
''cccooooooccc77	chr18:34376621-34376902(-)$1	281	241	257	10.0649
gggggooooooggggg	chr3:150176214-150176458(+)$1	244	215	231	10.3929
dd!!aooooooa22dd	chr1:31447396-31447641(-)$1	245	48	64	9.8582
bbcccooooooccc:F	chr17:34147066-34147313(+)$1	247	188	204	9.7612
ee[bboooooobb333	chr3:13360629-13360868(-)$1	239	165	181	10.3084
gggggooooooggggg	chr13:115090290-115090619(+)$1	329	224	240	10.3929
ii[bboooooobbiii	chr3:183960556-183960813(-)$1	257	180	196	9.8447
[ddddoooooodddd2	chr22:42263031-42263271(+)$1	240	217	233	10.6992
a[cccooooooccc]a	chr4:110384598-110384892(+)$1	294	106	122	11.9661
[ddddooooooddddc	chr9:130941398-130941656(-)$1	258	114	130	10.6146
:ddddooooooddddf	chrX:152958816-152959020(+)$1	204	103	119	9.6860
:ddddooooooddddd	chr12:56669689-56669941(-)$1	252	2	18	9.6943
ddd[aooooooa]ddd	chr6:33271974-33272238(-)$1	264	190	206	10.2269
!!cccooooooccc]b	chr15:75500265-75500566(+)$1	301	38	54	11.8769
$ddddooooooddddg	chr11:34111630-34111887(+)$1	257	42	58	10.5688
gg[bboooooobb333	chr14:99931951-99932227(-)$1	276	20	36	10.4194
ddcccooooooccc::	chr10:28905078-28905346(+)$1	268	146	162	9.8483
g[cccooooooccc]g	chr1:26606499-26606791(+)$1	292	231	247	11.9059
f[cccooooooccc22	chr5:175957804-175958083(-)$1	279	233	249	11.6882
d[cccooooooccc]d	chr12:53862474-53862704(+)$1	230	141	157	11.7311
eeeeeooooooeeeee	chr4:152022187-152022414(+)$1	227	165	181	9.7070
eeeeeooooooeeeee	chr13:25886930-25887172(+)$1	242	72	88	9.7070
"""bboooooobb444	chr1:42656944-42657201(-)$1	257	106	122	10.5351
[ddddoooooodddd]	chr19:41811479-41811758(+)$1	279	118	134	10.7139
c!!bboooooobb333	chr1:27101359-27101623(+)$1	264	120	136	10.7201
!ddddoooooodddd2	chrX:55039839-55040106(-)$1	267	126	142	10.7804
gggggooooooggggg	chr11:17096948-17097191(-)$1	243	17	33	10.3929
eeeeeooooooeeeee	chr7:99056669-99056879(-)$1	210	3	19	9.7070
gggggooooooggggg	chr16:30676086-30676341(+)$1	255	25	41	10.3929
ddd[aooooooa22dd	chr4:73956407-73956650(-)$1	243	125	141	9.8114
dd[bboooooobbddd	chr10:81926894-81927170(-)$1	276	171	187	9.7111
d:cccooooooccccc	chr15:67813632-67813902(+)$1	270	123	139	10.4988
!!cccooooooccc22	chr16:2303755-2304011(-)$1	256	132	148	12.0698
c[cccooooooccccc	chr17:57721544-57721806(+)$1	262	27	43	11.6889
c"""aooooooa22cc	chr11:68456283-68456495(+)$1	212	156	172	10.0170
%ddddoooooodddde	chr8:124219585-124219826(+)$1	241	96	112	10.1630
dddddoooooodddd]	chr1:228285528-228285761(+)$1	233	115	131	10.5119
ddcccooooooccc22	chr17:7483264-7483539(+)$1	275	73	89	11.5261
cccccooooooccc88	chr4:83765437-83765657(-)$1	220	128	144	10.9658
gggggooooooggggg	chr2:113404440-113404692(+)$1	252	178	194	10.3929
c[cccooooooccccc	chr20:48741544-48741779(-)$1	235	113	129	11.6889
fff[aooooooaffff	chr16:28845617-28845836(+)$1	219	154	170	9.5198
$$cccooooooccc55	chr1:28343564-28343803(-)$1	239	203	219	10.5302

#otherMatches

#Seq PSSM
GACCUCAUCCAGGGCC	chr20:48741589-48741815(-)$1	226	149	165	11.6889
CAGUCCCCCCAGGCCC	chr7:66409952-66410234(+)$1	282	145	161	11.9789
CGCAUACACACAUGCC	chr6:34212788-34213017(+)$1	229	123	139	9.5408
CAGGCUUUUCUGCCCA	chr1:150788648-150788936(-)$1	288	185	201	9.8160
AUGGUCUGCCUGCCUG	chr19:39964792-39965096(+)$1	304	253	269	12.3865
UUCGGUUCUACCUGGG	chr19:3985277-3985489(-)$1	212	72	88	10.4127
CCCUGCAACCCCAGCU	chr16:3072778-3073075(-)$1	297	175	191	11.9789
CCUCAACAGAAUGAAG	chr22:41924382-41924631(+)$1	249	204	220	11.4764
UAUGAUUUUUUUCAUU	chr5:139002852-139003081(+)$1	229	80	96	10.2914
augcccggcccggccg	chr16:58231493-58231791(-)$1	298	151	167	11.9453
GUACCAUUACAGGUUA	chr2:136432837-136433152(+)$1	315	52	68	9.7967
GAGGGCAAGCACCUUC	chr15:57543449-57543717(+)$1	268	122	138	9.7070
GUACCAUUACAGGUUA	chr2:136432801-136433033(+)$1	232	88	104	9.7967
AAGGCCAGACCGCUUG	chr7:77256434-77256701(+)$1	267	124	140	9.8176
GGGUGCGGCUCCACCC	chrX:153628107-153628352(+)$1	245	108	124	9.7070
GUAGGAACAGACCUCA	chr20:33122353-33122670(+)$1	317	270	286	11.5558
GCUCUAUCCUGGGGGC	chr12:7044955-7045222(+)$1	267	128	144	9.7070
aaCUAGCGUUAUAGAU	chr6:109697182-109697415(-)$1	233	27	43	11.4764
GCCUGCCUUCCCGGAC	chr1:16262600-16262862(+)$1	262	129	145	11.9046
AGUUGAAUGACCAAAA	chr18:34376621-34376902(-)$1	281	241	257	10.0649
CUUAAGCCUCAUUAAG	chr3:150176214-150176458(+)$1	244	215	231	10.3929
GCCAGUCUUUUCCAGC	chr1:31447396-31447641(-)$1	245	48	64	9.8582
UGGACUAGUUUGUUAA	chr17:34147066-34147313(+)$1	247	188	204	9.7612
UCUGUUCCCCUGCCCC	chr3:13360629-13360868(-)$1	239	165	181	10.3084
ACAGCUCCCACGUUGU	chr13:115090290-115090619(+)$1	329	224	240	10.3929
CAUGCCUGCACGCUGG	chr3:183960556-183960813(-)$1	257	180	196	9.8447
CUUUGAUAUACCAGAA	chr22:42263031-42263271(+)$1	240	217	233	10.6992
CGUGGUCAUCUCCAGG	chr4:110384598-110384892(+)$1	294	106	122	11.9661
UCCUGCAGGUCCAGGC	chr9:130941398-130941656(-)$1	258	114	130	10.6146
CGCCAUCAUCCUGGCU	chrX:152958816-152959020(+)$1	204	103	119	9.6860
CUUGUGUUGCAGCAAA	chr12:56669689-56669941(-)$1	252	2	18	9.6943
CUGAGCCAGCACCCAG	chr6:33271974-33272238(-)$1	264	190	206	10.2269
CCAAGGACCAACUUCC	chr15:75500265-75500566(+)$1	301	38	54	11.8769
AACAGUCAAUUUUGUA	chr11:34111630-34111887(+)$1	257	42	58	10.5688
CUUGAUUUUGUUCUUU	chr14:99931951-99932227(-)$1	276	20	36	10.4194
AGCACACUUCAGUGAA	chr10:28905078-28905346(+)$1	268	146	162	9.8483
CAGGGCUGUAUCCCGG	chr1:26606499-26606791(+)$1	292	231	247	11.9059
UGGUGAGUCGGCAUGG	chr5:175957804-175958083(-)$1	279	233	249	11.6882
UGUAAGUGUAGUUAGG	chr12:53862474-53862704(+)$1	230	141	157	11.7311
UGUUUGACCAAGGAUA	chr4:152022187-152022414(+)$1	227	165	181	9.7070
auuuauuuauuuaAAU	chr13:25886930-25887172(+)$1	242	72	88	9.7070
CCAGUCCCCUCACCCC	chr1:42656944-42657201(-)$1	257	106	122	10.5351
ACCCUACAACCAGGGA	chr19:41811479-41811758(+)$1	279	118	134	10.7139
CCUGCUCCCCUGCCCC	chr1:27101359-27101623(+)$1	264	120	136	10.7201
AGAGCUCCUGCGCUUG	chrX:55039839-55040106(-)$1	267	126	142	10.7804
UCAGGUGUAAUCCUGA	chr11:17096948-17097191(-)$1	243	17	33	10.3929
GUACUACAACAAGUAC	chr7:99056669-99056879(-)$1	210	3	19	9.7070
GGGCUCGGCCCGGCCC	chr16:30676086-30676341(+)$1	255	25	41	10.3929
GUUUCAUCUCAGUCAA	chr4:73956407-73956650(-)$1	243	125	141	9.8114
AGGCCAUGAAAGGCUU	chr10:81926894-81927170(-)$1	276	171	187	9.7111
CCGUCCGCAACGACCA	chr15:67813632-67813902(+)$1	270	123	139	10.4988
GAAAGCAAACCCUUGA	chr16:2303755-2304011(-)$1	256	132	148	12.0698
AGCAUAUAugaauguc	chr17:57721544-57721806(+)$1	262	27	43	11.6889
GAAACGUAAAAGGCCC	chr11:68456283-68456495(+)$1	212	156	172	10.0170
AGGGCCCUGUAGCCCC	chr8:124219585-124219826(+)$1	241	96	112	10.1630
GCGCCACCAGCGGCGA	chr1:228285528-228285761(+)$1	233	115	131	10.5119
GAAACGUCACAGUUCA	chr17:7483264-7483539(+)$1	275	73	89	11.5261
GUGACCCCAAAGUCCU	chr4:83765437-83765657(-)$1	220	128	144	10.9658
GUGGGCUCUGUCUUAC	chr2:113404440-113404692(+)$1	252	178	194	10.3929
GACCUCAUCCAGGGCC	chr20:48741544-48741779(-)$1	235	113	129	11.6889
CCAAGGGCCUACUGGC	chr16:28845617-28845836(+)$1	219	154	170	9.5198
AUGGUCAAUUUGCCUA	chr1:28343564-28343803(-)$1	239	203	219	10.5302

#DB
(.(((......)))))	chr20:48741589-48741815(-)$1	1	149	165	11.6889
..(((......)))..	chr7:66409952-66410234(+)$1	1	145	161	11.9789
.((((......))))(	chr6:34212788-34213017(+)$1	1	123	139	9.5408
..(((......)))((	chr1:150788648-150788936(-)$1	1	185	201	9.8160
..(((......)))..	chr19:39964792-39965096(+)$1	1	253	269	12.3865
(((((......)))))	chr19:3985277-3985489(-)$1	1	72	88	10.4127
..(((......)))..	chr16:3072778-3073075(-)$1	1	175	191	11.9789
(.(((......))).)	chr22:41924382-41924631(+)$1	1	204	220	11.4764
.((((......)))).	chr5:139002852-139003081(+)$1	1	80	96	10.2914
..(((......))).)	chr16:58231493-58231791(-)$1	1	151	167	11.9453
..(((......)))..	chr2:136432837-136433152(+)$1	1	52	68	9.7967
(((((......)))))	chr15:57543449-57543717(+)$1	1	122	138	9.7070
..(((......)))..	chr2:136432801-136433033(+)$1	1	88	104	9.7967
..(((......)))((	chr7:77256434-77256701(+)$1	1	124	140	9.8176
(((((......)))))	chrX:153628107-153628352(+)$1	1	108	124	9.7070
(.(((......)))))	chr20:33122353-33122670(+)$1	1	270	286	11.5558
(((((......)))))	chr12:7044955-7045222(+)$1	1	128	144	9.7070
(.(((......))).)	chr6:109697182-109697415(-)$1	1	27	43	11.4764
(.(((......))).)	chr1:16262600-16262862(+)$1	1	129	145	11.9046
..(((......)))..	chr18:34376621-34376902(-)$1	1	241	257	10.0649
(((((......)))))	chr3:150176214-150176458(+)$1	1	215	231	10.3929
((..(......)..))	chr1:31447396-31447641(-)$1	1	48	64	9.8582
))(((......))).)	chr17:34147066-34147313(+)$1	1	188	204	9.7612
((.((......))...	chr3:13360629-13360868(-)$1	1	165	181	10.3084
(((((......)))))	chr13:115090290-115090619(+)$1	1	224	240	10.3929
((.((......)))))	chr3:183960556-183960813(-)$1	1	180	196	9.8447
.((((......)))).	chr22:42263031-42263271(+)$1	1	217	233	10.6992
(.(((......))).)	chr4:110384598-110384892(+)$1	1	106	122	11.9661
.((((......)))))	chr9:130941398-130941656(-)$1	1	114	130	10.6146
.((((......))))(	chrX:152958816-152959020(+)$1	1	103	119	9.6860
.((((......))))(	chr12:56669689-56669941(-)$1	1	2	18	9.6943
(((.(......).)))	chr6:33271974-33272238(-)$1	1	190	206	10.2269
..(((......))).)	chr15:75500265-75500566(+)$1	1	38	54	11.8769
.((((......)))))	chr11:34111630-34111887(+)$1	1	42	58	10.5688
((.((......))...	chr14:99931951-99932227(-)$1	1	20	36	10.4194
))(((......)))..	chr10:28905078-28905346(+)$1	1	146	162	9.8483
(.(((......))).)	chr1:26606499-26606791(+)$1	1	231	247	11.9059
(.(((......)))..	chr5:175957804-175958083(-)$1	1	233	249	11.6882
(.(((......))).)	chr12:53862474-53862704(+)$1	1	141	157	11.7311
(((((......)))))	chr4:152022187-152022414(+)$1	1	165	181	9.7070
(((((......)))))	chr13:25886930-25887172(+)$1	1	72	88	9.7070
...((......))...	chr1:42656944-42657201(-)$1	1	106	122	10.5351
.((((......)))).	chr19:41811479-41811758(+)$1	1	118	134	10.7139
(..((......))...	chr1:27101359-27101623(+)$1	1	120	136	10.7201
.((((......)))).	chrX:55039839-55040106(-)$1	1	126	142	10.7804
(((((......)))))	chr11:17096948-17097191(-)$1	1	17	33	10.3929
(((((......)))))	chr7:99056669-99056879(-)$1	1	3	19	9.7070
(((((......)))))	chr16:30676086-30676341(+)$1	1	25	41	10.3929
(((.(......)..))	chr4:73956407-73956650(-)$1	1	125	141	9.8114
((.((......)))))	chr10:81926894-81927170(-)$1	1	171	187	9.7111
).(((......)))((	chr15:67813632-67813902(+)$1	1	123	139	10.4988
..(((......)))..	chr16:2303755-2304011(-)$1	1	132	148	12.0698
(.(((......)))))	chr17:57721544-57721806(+)$1	1	27	43	11.6889
(...(......)..))	chr11:68456283-68456495(+)$1	1	156	172	10.0170
.((((......)))))	chr8:124219585-124219826(+)$1	1	96	112	10.1630
(((((......)))).	chr1:228285528-228285761(+)$1	1	115	131	10.5119
(((((......)))..	chr17:7483264-7483539(+)$1	1	73	89	11.5261
(((((......)))..	chr4:83765437-83765657(-)$1	1	128	144	10.9658
(((((......)))))	chr2:113404440-113404692(+)$1	1	178	194	10.3929
(.(((......)))))	chr20:48741544-48741779(-)$1	1	113	129	11.6889
(((.(......)))))	chr16:28845617-28845836(+)$1	1	154	170	9.5198
..(((......)))..	chr1:28343564-28343803(-)$1	1	203	219	10.5302

#PSSM
d : 0.14	e : 0.12	c : 0.11	g : 0.11	: : 0.08	% : 0.06	# : 0.04	b : 0.04	[ : 0.04	! : 0.04	i : 0.03	" : 0.03	$ : 0.03	f : 0.03	' : 0.01	a : 0.01	
d : 0.27	[ : 0.17	e : 0.11	g : 0.09	# : 0.04	: : 0.04	" : 0.04	! : 0.04	i : 0.03	% : 0.03	' : 0.01	b : 0.01	c : 0.01	f : 0.01	$ : 0.01	
c : 0.45	d : 0.20	e : 0.09	g : 0.08	[ : 0.06	! : 0.03	" : 0.03	i : 0.01	f : 0.01	
c : 0.45	d : 0.17	e : 0.09	b : 0.09	g : 0.08	[ : 0.04	i : 0.01	! : 0.01	" : 0.01	
c : 0.45	d : 0.17	e : 0.09	b : 0.09	g : 0.08	a : 0.08	i : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.45	d : 0.17	e : 0.09	b : 0.09	g : 0.08	a : 0.08	i : 0.01	
c : 0.45	d : 0.17	e : 0.09	b : 0.09	g : 0.08	2 : 0.04	i : 0.01	] : 0.01	f : 0.01	
c : 0.45	d : 0.20	e : 0.09	g : 0.08	2 : 0.04	3 : 0.04	i : 0.03	4 : 0.01	f : 0.01	
d : 0.25	] : 0.12	e : 0.12	c : 0.08	2 : 0.08	g : 0.08	3 : 0.06	5 : 0.04	i : 0.03	: : 0.03	7 : 0.01	4 : 0.01	8 : 0.01	f : 0.01	
e : 0.14	2 : 0.12	c : 0.11	d : 0.11	g : 0.11	b : 0.06	3 : 0.06	f : 0.04	5 : 0.04	i : 0.03	] : 0.03	7 : 0.01	F : 0.01	a : 0.01	: : 0.01	4 : 0.01	8 : 0.01	

#score	658.2878563855271
#seq	62
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_transcript_m1_run1.txt

#BEAR
bb[bb[===========[aooooooa]===========]b	chr9:139815769-139816059(+)$1	290	97	137	16.1693
bb[ccc[ggggggg"""cccnnnnncccggggggg]ccc]	chr7:157582159-157582443(-)$1	284	214	254	12.7865
[eeeee[ccc!!a!!eeeeeooooooeeeee]a22ccc22	chr8:144677665-144677923(-)$1	258	131	171	12.6348
==hhhhhhhh[ccc"""aooooooa333ccc]hhhhhhhh	chr19:35491560-35491835(+)$1	275	197	237	15.5897
b"""ggggggg[bb[cccooooooccc]bbggggggg333	chr20:61908336-61908621(+)$1	285	118	158	17.5575
f####hhhhhhhh!!cccooooooccc22hhhhhhhhfff	chr14:103575065-103575342(+)$1	277	177	217	15.6543
"""eeeee!!hhhhhhhhoooooohhhhhhhheeeee333	chr3:128839770-128840007(-)$1	237	174	214	13.2919
%%%ccc[eeeee[a[cccooooooccc]a]eeeee]ccc7	chr21:46858193-46858499(+)$1	306	203	243	14.5964
i[ccc####bb[a!!cccooooooccc22a]bbccciiii	chr8:142412074-142412332(+)$1	258	154	194	17.3450
e"""iiiiiiiii"""bboooooobbiiiiiiiii]eeee	chr17:4850616-4850844(-)$1	228	122	162	18.1967
[bb[===========[bboooooobb]===========]b	chr16:30969219-30969479(+)$1	260	159	199	18.0718
ccc[ccc[ggggggg[bboooooobb]ggggggg]ccccc	chr6:76311805-76312093(+)$1	288	23	63	17.2125
cc[ccc!!bb[bb[a!!bbnnnnnbb22a]bb]bb22ccc	chr3:127872217-127872487(+)$1	270	61	101	12.7493
eeeee"""dddd"""cccooooooccc666666ddddeee	chr11:820091-820342(+)$1	251	105	145	12.9009
:dddd"""dddd####bboooooobb4444dddd22dddd	chr22:47523631-47523873(+)$1	242	168	208	14.8063
eeee####ccc[ddddoooooodddd22ccc333eeeee4	chr6:160148327-160148573(+)$1	246	18	58	13.0016
####bb!!eeeee[cccooooooccc22eeeee22bb444	chr6:17393798-17394067(+)$1	269	52	92	14.8179
gg[ccc[ggggggg!!bboooooobb22gggggggccc22	chr16:89266625-89266912(-)$1	287	182	222	19.1986
dddd!!eeeee[bb!!bboooooobb22bb]eeeee4444	chr20:62526654-62526955(+)$1	301	59	99	16.4796
!dddd[a[a####a!!bbmmmmbb]a4444a]a]dddd]c	chr19:6709464-6709724(-)$1	260	48	88	11.8501
b[ggggggg[eeeee[bboooooobb333eeeeegggggg	chr7:27153331-27153581(-)$1	250	134	174	17.1532
ggggg!!a[ccc[ccc[bbnnnnnbb]ccc]ccca22ggg	chrX:20284126-20284387(-)$1	261	164	204	13.4113
ffff[ffffff####cccooooooccc22fffffffffff	chr1:12644503-12644780(-)$1	277	56	96	15.1729
d===========[bbcccnnnnnccc]bb]==========	chr9:134269730-134270027(+)$1	297	170	210	13.5069
fffeeeee[ccc"""cccooooooccc22ccc]eeeee22	chr20:42087098-42087352(+)$1	254	141	181	16.9202
ddd!!bb####ddddcccooooooccc22dddd22bb22d	chr2:219265614-219265899(+)$1	285	38	78	14.0023
%%%%a[eeeee[bb[cccooooooccc333bb]eeeee]a	chr2:236445997-236446267(+)$1	270	19	59	14.4592
[a!!bb[ccc[ccc!!bb[allla]bb22ccc]cccbb22	chr5:137688326-137688629(+)$1	303	116	156	14.5947
eeee"""ccc!!ffffffooooooffffff]ccc]eeeee	chr2:120189452-120189736(+)$1	284	191	231	14.6016
gggggg[bb[bb[a[ccclllccc]a22bb]bb]gggggg	chr8:26241029-26241362(+)$1	333	188	228	12.1935
BB:ggggggg$$$$$cccooooooccc333gggggggbbc	chr7:148580939-148581201(-)$1	262	40	80	14.3316
gg[ccc[ggggggg!!bboooooobb22gggggggccc22	chr16:89266543-89266786(-)$1	243	56	96	19.1986
####ffffffccc"""ccclllccc4444ccc]ffffff4	chr3:110790744-110791021(+)$1	277	37	77	13.1132
eeeeeeeeeeccc####bbnnnnnbb333ccc]eeeee]e	chr17:43129340-43129669(+)$1	329	218	258	13.9745
[bb!!bb[ccc[ffffffooooooffffff]cccbb4444	chr19:39339986-39340278(-)$1	292	73	113	13.7304
!a[ccc!!eeeee!!cccooooooccc22eeeee22ccc]	chr11:63953683-63953940(+)$1	257	160	200	17.4476
[dddd[ccc$$$$$ddddoooooodddd333ccc]ddddd	chr16:50631825-50632071(+)$1	246	85	125	13.1066
==========[ccc[ddddllldddd]ccc]=========	chr1:227131727-227132079(+)$1	352	262	302	13.0675
ii[bb!!bb[cccffffffooooooffffff]ccc]bb22	chr7:97914483-97914763(+)$1	280	182	222	12.7374
cc[ffffff[ccc[a"""bbmmmmbb333a]ccc]fffff	chr18:74116114-74116371(-)$1	257	194	234	12.4584
eeeggggggg!!bbbbbboooooobb]bb]bb333ggggg	chr1:1239550-1239793(-)$1	243	155	195	15.4156
gggggg[bbbb[ccc[aooooooa]ccc]bb]bbgggggg	chr21:45284974-45285230(+)$1	256	96	136	13.8113
gggggghhhhhhhh!!bboooooobb22hhhhhhhh:a!!	chr14:60716524-60716785(+)$1	261	182	222	14.3561
eeeee[bb[eeeee!!bboooooobb22eeeee]bb]eee	chr8:620707-621076(-)$1	369	22	62	15.3926
::dddd[iiiiiiiii"""bblllbb333iiiiiiiii33	chr17:76969817-76970072(-)$1	255	206	246	13.0182
eeedddd####gggggggoooooogggggggdddd]eeee	chr22:37415720-37416003(+)$1	283	75	115	13.8355
cccccc[a[a!!ffffffooooooffffff333a]a]ccc	chr8:81070316-81070603(-)$1	287	214	254	14.9783
gggggg[ccc!!dddd"""bblllbb22dddd333ccc33	chr21:47564846-47565097(-)$1	251	132	172	13.2056
ggg"""ccc[ccc!!cccnnnnnccc22cccccc333ggg	chr20:31960776-31961053(-)$1	277	211	251	14.9920

#otherMatches

#Seq PSSM
GGUCGGGGUAGGGGGGUUGGGCCGGCUGCCCUCCUGCCGU	chr9:139815769-139816059(+)$1	290	97	137	16.1693
CUUUUGAAGAGAAGCCCAGGCCGCCCCUUUUCUCUCCGGC	chr7:157582159-157582443(-)$1	284	214	254	12.7865
AGAUAUGCAGGACAGGCUGGCGUUUCCCAGUGGGGCUGGA	chr8:144677665-144677923(-)$1	258	131	171	12.6348
CCGGCCUGGGAUGGAGACAGGAUCGGGACCAGCCCAGGCC	chr19:35491560-35491835(+)$1	275	197	237	15.5897
GGGUGCUCCAGGCGGGCCGUGGGGGGUGCGCUGGAGUCGA	chr20:61908336-61908621(+)$1	285	118	158	17.5575
AGCUCGAAUCUCUCCAAGUCCAUUCUUUUGGAGAUUCUGG	chr14:103575065-103575342(+)$1	277	177	217	15.6543
CCAUUGGAAGGCAGGGGGUUAGACUCCCCUGUUCCAGGUA	chr3:128839770-128840007(-)$1	237	174	214	13.2919
ACUGUGCACCCAUCCUUGUUUUCUCGAUGUUGGGUUUACU	chr21:46858193-46858499(+)$1	306	203	243	14.5964
CUAGAAACAUUGGAGGCCGCCCUGGGUGACGGGUCUGAGG	chr8:142412074-142412332(+)$1	258	154	194	17.3450
GUACCUAGACCCGAGAGCUGGCCUGCCGGGUCUGGCCCCU	chr17:4850616-4850844(-)$1	228	122	162	18.1967
gccgccgccucgcgccgcugAGGUGCCGCGCGAGGUGGGG	chr16:30969219-30969479(+)$1	260	159	199	18.0718
GGACGAAGGGAGGCGUGUUUGUGUGCUCGCUUUCAUUCUC	chr6:76311805-76312093(+)$1	288	23	63	17.2125
GGGCCGGACCGCGGCGACUACCGAGGGAGGUGAGGGGCGG	chr3:127872217-127872487(+)$1	270	61	101	12.7493
GCGGGACCGUGAGAAUCCGAGGAGGGACCUAAGUCACCCC	chr11:820091-820342(+)$1	251	105	145	12.9009
UGAGGUGAGGGUUUCCGGCCUCUCCCACCCACCCAUCCUC	chr22:47523631-47523873(+)$1	242	168	208	14.8063
GCCUGAAAGGCGACUCUCCUGUGAGUGGGCCAGAAGGCGA	chr6:160148327-160148573(+)$1	246	18	58	13.0016
GACACCGGCUCCUAUUCAGCUGGGAGGAGGGAGAGGGGAG	chr6:17393798-17394067(+)$1	269	52	92	14.8179
CCAGCCGCUGCCCGAGUCCCUCUUGAAAUGGGCAGGGCAG	chr16:89266625-89266912(-)$1	287	182	222	19.1986
cgucaggcccgggcaggcgggcgggcgggcgcgggugggg	chr20:62526654-62526955(+)$1	301	59	99	16.4796
AGGCUGCUGAGAAGAGGCGGAGGCACGGAGCUGGGGCUGG	chr19:6709464-6709724(-)$1	260	48	88	11.8501
GAGCCGUGCUGGAGCAGCGAGGCGGCCACGCUCUGCGCGG	chr7:27153331-27153581(-)$1	250	134	174	17.1532
GCGGGGAGACCGGCGCGCGGGGCACGGGCGGCGGCGACCU	chrX:20284126-20284387(-)$1	261	164	204	13.4113
GGGCGCCCAGGUAGACUUGAGUGGAAGGUUCUGGGGCCCU	chr1:12644503-12644780(-)$1	277	56	96	15.1729
CCGCGCGGCCUCAGGCUCGGGCGGGGUCCAGGGGCCGCGC	chr9:134269730-134270027(+)$1	297	170	210	13.5069
GGCCGGGGGUCGUUUGACUUGGGUGUCCCCGAGCCCCGCU	chr20:42087098-42087352(+)$1	254	141	181	16.9202
CGGAACUGAGGGCAAGGUGGAAAGGCUAGUUGCAGGGGGC	chr2:219265614-219265899(+)$1	285	38	78	14.0023
agagggcuggcgucagcucagggaagcagggaggccagGC	chr2:236445997-236446267(+)$1	270	19	59	14.4592
gggaggcggcgggcgggagcgcgggucaggccggccccgg	chr5:137688326-137688629(+)$1	303	116	156	14.5947
UUGCAAACCUGGGUCCGGAGGAGGCUGGGCGGGGAGCAAC	chr2:120189452-120189736(+)$1	284	191	231	14.6016
GGGCUCGCGGGCGGGCAGCGUCUGGCGGGCGCGGGAGCCC	chr8:26241029-26241362(+)$1	333	188	228	12.1935
CCGGUCCCGGGUAUCGCCGAGCGGGGCUCACCGGGGCGCC	chr7:148580939-148581201(-)$1	262	40	80	14.3316
CCAGCCGCUGCCCGAGUCCCUCUUGAAAUGGGCAGGGCAG	chr16:89266543-89266786(-)$1	243	56	96	19.1986
ACAGCCUCCGCCCAGAGCCUGAGGCGCCGGggccggggga	chr3:110790744-110791021(+)$1	277	37	77	13.1132
UUUUCCUUUCCCCGGAGCCGGGAAGGAGAGGGAGAGAGAG	chr17:43129340-43129669(+)$1	329	218	258	13.9745
GGCGGCCGUUGGGCAAACGGCGGGGUUUGCGCGAGGACAG	chr19:39339986-39340278(-)$1	292	73	113	13.7304
gagcucggcgcuggggccggacggggcggcggcggggagg	chr11:63953683-63953940(+)$1	257	160	200	17.4476
GCUCCGGGUGAAGGGGACAGGAUGGUCCAGGGCUGGGAGG	chr16:50631825-50632071(+)$1	246	85	125	13.1066
CUCCAUCCUUGGGAGAUGGUAGCCAUGUCCAGAGGGUGGA	chr1:227131727-227132079(+)$1	352	262	302	13.0675
AGACGAUGGAGGUGGAGGGGCUGCUCCCUCCUACCACCUG	chr7:97914483-97914763(+)$1	280	182	222	12.7374
UCAUGGAAGAGGGCGAUACCAUGUGGGACCACCUGCUUCC	chr18:74116114-74116371(-)$1	257	194	234	12.4584
UGUUUCCUGAAAGCCCCUUCCCAUGGUGGAGCCCCUCAGG	chr1:1239550-1239793(-)$1	243	155	195	15.4156
ggcgggaugggggccgggggcggcgggcgccgcacucgcu	chr21:45284974-45285230(+)$1	256	96	136	13.8113
ACGGCCGCAGGCCGGCCUGGCCGGAGAGCGGCCUGCAGAA	chr14:60716524-60716785(+)$1	261	182	222	14.3561
GGACCGGUGGGCUCAGGUGUUGGAGCAGGGGCCGGCAGGU	chr8:620707-621076(-)$1	369	22	62	15.3926
GAUUUCAUUUUGAGUUAGGCUUUGAGAGGGGCUCAAAGAA	chr17:76969817-76970072(-)$1	255	206	246	13.0182
CUCCCUUUGGUCCGCUGCAGGUUGGUGGCGGGAGGAGGGG	chr22:37415720-37416003(+)$1	283	75	115	13.8355
AGUCAUGGGUGUUUUAAAGGGAAAUUUGGAUUAAGUGAUG	chr8:81070316-81070603(-)$1	287	214	254	14.9783
GCCUGCAAGAAUCUCAGGAACACAGUGAUGAGUGCUCUCA	chr21:47564846-47565097(-)$1	251	132	172	13.2056
aagaggcugagguggaaggaucacuugagcccaggaauuu	chr20:31960776-31961053(-)$1	277	211	251	14.9920

#DB
((.((.(((((((((((.(......).))))))))))).)	chr9:139815769-139816059(+)$1	1	97	137	16.1693
((.(((.(((((((...(((.....)))))))))).))).	chr7:157582159-157582443(-)$1	1	214	254	12.7865
.(((((.(((..(..(((((......))))).)..)))..	chr8:144677665-144677923(-)$1	1	131	171	12.6348
((((((((((.(((...(......)...))).))))))))	chr19:35491560-35491835(+)$1	1	197	237	15.5897
(...(((((((.((.(((......))).)))))))))...	chr20:61908336-61908621(+)$1	1	118	158	17.5575
(....((((((((..(((......)))..)))))))))))	chr14:103575065-103575342(+)$1	1	177	217	15.6543
...(((((..((((((((......)))))))))))))...	chr3:128839770-128840007(-)$1	1	174	214	13.2919
...(((.(((((.(.(((......))).).))))).))).	chr21:46858193-46858499(+)$1	1	203	243	14.5964
(.(((....((.(..(((......)))..).)))))))))	chr8:142412074-142412332(+)$1	1	154	194	17.3450
(...(((((((((...((......))))))))))).))))	chr17:4850616-4850844(-)$1	1	122	162	18.1967
.((.(((((((((((.((......)).))))))))))).)	chr16:30969219-30969479(+)$1	1	159	199	18.0718
(((.(((.(((((((.((......)).))))))).)))))	chr6:76311805-76312093(+)$1	1	23	63	17.2125
((.(((..((.((.(..((.....))..).)).))..)))	chr3:127872217-127872487(+)$1	1	61	101	12.7493
(((((...((((...(((......)))......)))))))	chr11:820091-820342(+)$1	1	105	145	12.9009
.((((...((((....((......))....))))..))))	chr22:47523631-47523873(+)$1	1	168	208	14.8063
((((....(((.((((......))))..)))...))))).	chr6:160148327-160148573(+)$1	1	18	58	13.0016
....((..(((((.(((......)))..)))))..))...	chr6:17393798-17394067(+)$1	1	52	92	14.8179
((.(((.(((((((..((......))..))))))))))..	chr16:89266625-89266912(-)$1	1	182	222	19.1986
((((..(((((.((..((......))..)).)))))....	chr20:62526654-62526955(+)$1	1	59	99	16.4796
.((((.(.(....(..((....)).)....).).)))).)	chr19:6709464-6709724(-)$1	1	48	88	11.8501
(.(((((((.(((((.((......))...)))))))))))	chr7:27153331-27153581(-)$1	1	134	174	17.1532
(((((..(.(((.(((.((.....)).))).))))..)))	chrX:20284126-20284387(-)$1	1	164	204	13.4113
((((.((((((....(((......)))..)))))))))))	chr1:12644503-12644780(-)$1	1	56	96	15.1729
)(((((((((((.(((((.....))).)).))))))))))	chr9:134269730-134270027(+)$1	1	170	210	13.5069
((((((((.(((...(((......)))..))).)))))..	chr20:42087098-42087352(+)$1	1	141	181	16.9202
(((..((....(((((((......)))..))))..))..)	chr2:219265614-219265899(+)$1	1	38	78	14.0023
....(.(((((.((.(((......)))...)).))))).)	chr2:236445997-236446267(+)$1	1	19	59	14.4592
.(..((.(((.(((..((.(...).))..))).)))))..	chr5:137688326-137688629(+)$1	1	116	156	14.5947
((((...(((..((((((......)))))).))).)))))	chr2:120189452-120189736(+)$1	1	191	231	14.6016
((((((.((.((.(.(((...))).)..)).)).))))))	chr8:26241029-26241362(+)$1	1	188	228	12.1935
((.(((((((.....(((......)))...)))))))(((	chr7:148580939-148581201(-)$1	1	40	80	14.3316
((.(((.(((((((..((......))..))))))))))..	chr16:89266543-89266786(-)$1	1	56	96	19.1986
....(((((((((...(((...)))....))).)))))).	chr3:110790744-110791021(+)$1	1	37	77	13.1132
(((((((((((((....((.....))...))).))))).)	chr17:43129340-43129669(+)$1	1	218	258	13.9745
.((..((.(((.((((((......)))))).)))))....	chr19:39339986-39340278(-)$1	1	73	113	13.7304
.(.(((..(((((..(((......)))..)))))..))).	chr11:63953683-63953940(+)$1	1	160	200	17.4476
.((((.(((.....((((......))))...))).)))))	chr16:50631825-50632071(+)$1	1	85	125	13.1066
((((((((((.(((.((((...)))).))).)))))))))	chr1:227131727-227132079(+)$1	1	262	302	13.0675
((.((..((.(((((((((......)))))).))).))..	chr7:97914483-97914763(+)$1	1	182	222	12.7374
((.((((((.(((.(...((....))...).))).)))))	chr18:74116114-74116371(-)$1	1	194	234	12.4584
((((((((((..((((((......)).)).))...)))))	chr1:1239550-1239793(-)$1	1	155	195	15.4156
((((((.((((.(((.(......).))).)).))))))))	chr21:45284974-45285230(+)$1	1	96	136	13.8113
))))))((((((((..((......))..)))))))).(..	chr14:60716524-60716785(+)$1	1	182	222	14.3561
(((((.((.(((((..((......))..))))).)).)))	chr8:620707-621076(-)$1	1	22	62	15.3926
..((((.(((((((((...((...))...)))))))))..	chr17:76969817-76970072(-)$1	1	206	246	13.0182
(((((((....(((((((......))))))))))).))))	chr22:37415720-37416003(+)$1	1	75	115	13.8355
)))(((.(.(..((((((......))))))...).).)))	chr8:81070316-81070603(-)$1	1	214	254	14.9783
((((((.(((..((((...((...))..))))...)))..	chr21:47564846-47565097(-)$1	1	132	172	13.2056
(((...(((.(((..(((.....)))..))))))...)))	chr20:31960776-31961053(-)$1	1	211	251	14.9920

#PSSM
e : 0.16	g : 0.16	[ : 0.10	b : 0.08	c : 0.08	f : 0.06	d : 0.06	= : 0.04	% : 0.04	i : 0.04	: : 0.04	# : 0.04	! : 0.04	" : 0.02	B : 0.02	
e : 0.16	g : 0.16	d : 0.10	b : 0.08	c : 0.08	= : 0.06	" : 0.06	# : 0.06	% : 0.04	[ : 0.04	f : 0.04	a : 0.04	B : 0.02	i : 0.02	: : 0.02	
[ : 0.16	e : 0.16	g : 0.14	d : 0.12	" : 0.06	# : 0.06	c : 0.06	% : 0.04	b : 0.04	f : 0.04	= : 0.04	h : 0.02	! : 0.02	: : 0.02	
c : 0.16	e : 0.16	g : 0.16	d : 0.12	" : 0.06	# : 0.06	! : 0.06	b : 0.04	[ : 0.04	f : 0.04	= : 0.04	h : 0.02	% : 0.02	
c : 0.18	g : 0.18	e : 0.12	d : 0.10	b : 0.08	= : 0.06	! : 0.06	# : 0.04	" : 0.04	f : 0.04	h : 0.02	i : 0.02	[ : 0.02	a : 0.02	
c : 0.16	g : 0.16	[ : 0.10	e : 0.08	" : 0.08	b : 0.08	= : 0.06	! : 0.06	f : 0.06	h : 0.04	# : 0.04	d : 0.04	i : 0.02	
[ : 0.22	e : 0.10	! : 0.10	= : 0.08	g : 0.08	h : 0.06	c : 0.06	" : 0.06	f : 0.06	b : 0.06	# : 0.04	i : 0.02	a : 0.02	d : 0.02	
g : 0.14	c : 0.12	e : 0.12	= : 0.08	# : 0.08	b : 0.08	h : 0.06	[ : 0.06	! : 0.06	f : 0.06	i : 0.04	" : 0.04	a : 0.04	
g : 0.16	c : 0.16	e : 0.12	= : 0.08	b : 0.08	[ : 0.08	h : 0.06	# : 0.06	f : 0.06	i : 0.04	d : 0.04	! : 0.02	a : 0.02	
c : 0.16	g : 0.14	e : 0.14	[ : 0.10	= : 0.08	h : 0.06	b : 0.06	# : 0.06	i : 0.04	d : 0.04	f : 0.04	! : 0.02	$ : 0.02	a : 0.02	
c : 0.18	e : 0.14	g : 0.10	! : 0.10	[ : 0.08	= : 0.06	h : 0.06	b : 0.06	# : 0.06	i : 0.04	d : 0.04	$ : 0.04	f : 0.02	
c : 0.20	[ : 0.14	g : 0.10	! : 0.10	e : 0.10	= : 0.06	h : 0.06	d : 0.06	i : 0.04	b : 0.04	# : 0.04	$ : 0.04	
c : 0.18	g : 0.10	b : 0.10	[ : 0.08	e : 0.08	h : 0.06	# : 0.06	d : 0.06	f : 0.06	= : 0.04	a : 0.04	i : 0.04	" : 0.04	$ : 0.04	
g : 0.10	! : 0.10	c : 0.10	b : 0.10	" : 0.08	f : 0.08	a : 0.06	[ : 0.06	# : 0.06	d : 0.06	= : 0.04	h : 0.04	e : 0.04	$ : 0.04	i : 0.02	
! : 0.24	" : 0.12	[ : 0.10	d : 0.08	f : 0.08	# : 0.06	c : 0.06	= : 0.04	g : 0.04	a : 0.04	b : 0.04	h : 0.02	e : 0.02	$ : 0.02	i : 0.02	
c : 0.32	! : 0.16	" : 0.10	[ : 0.08	d : 0.08	f : 0.08	# : 0.04	= : 0.02	e : 0.02	h : 0.02	b : 0.02	i : 0.02	g : 0.02	
c : 0.32	b : 0.26	" : 0.10	f : 0.08	d : 0.04	= : 0.02	e : 0.02	h : 0.02	! : 0.02	o : 0.02	[ : 0.02	# : 0.02	a : 0.02	g : 0.02	
c : 0.32	b : 0.32	f : 0.08	o : 0.06	" : 0.06	d : 0.04	[ : 0.02	e : 0.02	a : 0.02	h : 0.02	g : 0.02	
o : 0.65	b : 0.08	c : 0.04	n : 0.04	" : 0.04	a : 0.02	e : 0.02	m : 0.02	[ : 0.02	l : 0.02	d : 0.02	f : 0.02	
o : 0.69	n : 0.10	l : 0.06	b : 0.06	c : 0.02	e : 0.02	m : 0.02	a : 0.02	
o : 0.71	n : 0.12	l : 0.08	m : 0.04	b : 0.04	
o : 0.71	n : 0.12	l : 0.10	m : 0.04	c : 0.02	
o : 0.69	n : 0.12	l : 0.06	d : 0.04	c : 0.04	b : 0.02	m : 0.02	
o : 0.65	c : 0.10	n : 0.08	d : 0.04	a : 0.04	l : 0.04	b : 0.02	m : 0.02	
b : 0.34	c : 0.30	] : 0.08	o : 0.06	d : 0.06	f : 0.06	n : 0.02	a : 0.02	h : 0.02	g : 0.02	
b : 0.36	c : 0.32	f : 0.08	a : 0.06	d : 0.06	o : 0.02	3 : 0.02	h : 0.02	4 : 0.02	g : 0.02	
c : 0.26	2 : 0.22	] : 0.14	3 : 0.10	f : 0.08	4 : 0.06	e : 0.02	h : 0.02	i : 0.02	b : 0.02	d : 0.02	g : 0.02	
2 : 0.36	3 : 0.14	c : 0.08	f : 0.08	4 : 0.06	= : 0.04	] : 0.04	g : 0.04	b : 0.04	e : 0.02	h : 0.02	i : 0.02	6 : 0.02	d : 0.02	
2 : 0.14	3 : 0.14	g : 0.10	c : 0.10	b : 0.10	f : 0.08	e : 0.06	4 : 0.06	= : 0.04	h : 0.04	a : 0.04	i : 0.02	6 : 0.02	] : 0.02	d : 0.02	
c : 0.18	g : 0.10	e : 0.10	f : 0.10	b : 0.08	] : 0.08	h : 0.06	3 : 0.06	= : 0.04	a : 0.04	i : 0.04	4 : 0.04	d : 0.04	6 : 0.02	
] : 0.16	g : 0.14	c : 0.14	e : 0.12	b : 0.08	= : 0.06	h : 0.06	d : 0.06	i : 0.04	f : 0.04	3 : 0.04	6 : 0.02	a : 0.02	
c : 0.20	g : 0.12	e : 0.12	] : 0.10	b : 0.10	= : 0.08	d : 0.08	h : 0.06	i : 0.04	3 : 0.04	6 : 0.02	f : 0.02	
e : 0.14	c : 0.14	g : 0.12	] : 0.12	= : 0.08	3 : 0.08	h : 0.06	b : 0.06	d : 0.06	a : 0.04	i : 0.04	6 : 0.02	f : 0.02	
c : 0.18	e : 0.16	g : 0.12	= : 0.08	2 : 0.06	h : 0.06	d : 0.06	3 : 0.06	] : 0.06	i : 0.04	b : 0.04	f : 0.04	a : 0.02	
g : 0.16	e : 0.14	2 : 0.10	] : 0.10	= : 0.08	h : 0.06	c : 0.06	b : 0.06	d : 0.06	3 : 0.06	i : 0.04	f : 0.04	a : 0.02	
c : 0.14	e : 0.14	g : 0.12	] : 0.10	= : 0.08	2 : 0.08	b : 0.08	h : 0.06	d : 0.06	f : 0.06	i : 0.02	a : 0.02	3 : 0.02	
c : 0.16	e : 0.16	g : 0.12	= : 0.08	d : 0.08	b : 0.08	f : 0.06	h : 0.04	i : 0.04	2 : 0.04	4 : 0.04	] : 0.04	: : 0.02	3 : 0.02	
c : 0.20	e : 0.18	g : 0.12	= : 0.08	f : 0.08	d : 0.06	4 : 0.06	b : 0.06	3 : 0.04	i : 0.04	h : 0.02	2 : 0.02	a : 0.02	
2 : 0.14	c : 0.12	e : 0.12	g : 0.12	] : 0.10	3 : 0.08	f : 0.08	4 : 0.06	d : 0.04	= : 0.04	h : 0.02	i : 0.02	b : 0.02	! : 0.02	
2 : 0.12	e : 0.12	g : 0.12	c : 0.10	4 : 0.10	3 : 0.08	f : 0.06	d : 0.06	b : 0.04	] : 0.04	= : 0.04	h : 0.02	7 : 0.02	i : 0.02	a : 0.02	! : 0.02	

#score	723.0998822474204
#seq	49
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_transcript_m1_run1.txt

#BEAR
eeee!!ccc"""cccooooooccc333ccc22eee	chr1:32797703-32797941(+)$1	238	124	159	17.1295
cc[a[eeeee"""bboooooobb333eeeee22a]	chr18:1365646-1365891(-)$1	245	16	51	14.9233
[bb!!ccc[bbddddoooooodddd]bb]ccc333	chr11:85779947-85780220(-)$1	273	212	247	13.3564
dddd"""ffffff[aooooooaffffff333dddd	chr1:90460828-90461039(+)$1	211	153	188	12.0252
bb[ggggggg!!cccooooooccc]ggggggg]bb	chr3:121409567-121409813(-)$1	246	134	169	16.2368
Iccc[ccc[a!!cccooooooccc22accc]ccc:	chr19:4816562-4816799(-)$1	237	182	217	15.1165
ff==========cccooooooccc22=========	chr10:119133699-119133925(-)$1	226	164	199	18.7395
[ccc[a[ccc!!ddddmmmmdddd333cccaccc]	chr8:52773499-52773759(-)$1	260	79	114	13.0458
fffff[cccccc[cccnnnnnccc]ccc4444ccc	chr19:10370385-10370673(+)$1	288	172	207	12.4470
ccc!!==========oooooo==========22cc	chr8:23429360-23429622(+)$1	262	3	38	17.1443
ggggggg!!gggggggnnnnnggggggg22ggggg	chr19:46915274-46915538(-)$1	264	213	248	11.6315
bb[==========[bbnnnnnbb]==========]	chr11:9595783-9596093(+)$1	310	119	154	14.0200
=================mmmm==============	chr11:490596-490854(+)$1	258	192	227	14.9037
eeedddd[ddddcccooooooccc]dddd]dddd4	chr2:64861561-64861822(-)$1	261	62	97	12.5037
eeee"""eeeee[bboooooobb333eeeee4444	chr6:30584508-30584717(-)$1	209	134	169	14.0965
b####dddd"""cccooooooccc]dddd4444bb	chr17:26946809-26947047(-)$1	238	24	59	14.9383
===========ddddooooooddddcccmmmmccc	chr1:16200637-16200887(+)$1	250	147	182	13.4315
dddeeeee####cccooooooccceeeee22dddd	chr8:125486655-125486892(-)$1	237	114	149	13.5790
ggggggg$$$$$cccooooooccc4444ggggggg	chr3:183702451-183702773(-)$1	322	54	89	16.3598
[ggggggg####ddddmmmmdddd333ggggggg]	chr3:186760430-186760701(+)$1	271	210	245	13.6288
ddddggggggg[cccooooooccc22gggggggff	chr16:727688-727951(+)$1	263	215	250	15.8496
ffffff[ccc"""ddddllldddd22ccc]fffff	chrX:39932377-39932647(-)$1	270	147	182	11.9443
iiiiiiii"""ddddnnnnndddd22iiiiiiiii	chr1:236958794-236959011(+)$1	217	166	201	13.9430
:==========!!eeeeellleeeee=========	chr10:98346462-98346670(-)$1	208	81	116	12.1558
cbb!!dddd"""cccooooooccc22dddd22bb:	chr9:139360356-139360605(-)$1	249	91	126	14.1429
:eeeee==========lll==========4444ee	chr1:161697297-161697553(+)$1	256	147	182	12.7962
ff[bb"""ccc[cccnnnnnccc4444ccc333bb	chr21:34924960-34925199(+)$1	239	13	48	13.0373
eeeeebbggggggg!!aooooooa22ggggggg]b	chr19:49140235-49140543(-)$1	308	113	148	12.4187
=========[eeeeeooooooeeeee]========	chr5:148730685-148730933(+)$1	248	38	73	15.4416
$ccc[ccc$$$$$bboooooobb333ccc]ccc44	chr2:37438917-37439172(-)$1	255	100	135	15.5119
ccc$$$$$gggggggooooooggggggg4444ccc	chr5:39377022-39377326(-)$1	304	76	111	13.7875
[ccc!!ccc[a"""cccmmmmccc]acccccc]cc	chr1:150551306-150551510(-)$1	204	80	115	12.9444
cccc[ggggggg"""bbmmmmbb333gggggggcc	chr7:116593433-116593708(-)$1	275	219	254	12.0992
:ggggggg[dddd[aooooooa]dddd]ggggggg	chr19:9273409-9273672(+)$1	263	142	177	12.7702
eeeee[ccc"""cccooooooccc]ccc]eeeeed	chr2:71653658-71653985(+)$1	327	57	92	15.4656
]ccc=============nnnnn=============	chr14:65543144-65543382(-)$1	238	109	144	13.8944
ffffffcccccc[bboooooobbccc]ccc>>>>>	chr1:19934481-19934733(+)$1	252	167	202	12.4926
fff[eeeee"""cccooooooccceeeee]fffff	chr2:12857275-12857520(+)$1	245	150	185	14.4565
!ggggggg[bb[addddllldddd22a]bb]gggg	chr11:16760134-16760400(+)$1	266	162	197	11.6968
$===============mmmm===============	chr7:138765307-138765538(-)$1	231	62	97	14.7774
eeeeeffffffddddoooooodddd]ffffff333	chr16:2281594-2281844(+)$1	250	45	80	12.1257
[a[==========[aqqqqqqqqa]==========	chr1:180471073-180471393(-)$1	320	235	270	12.4270
[ccc"""bb"""ccclllccc]bb333ccc]dddd	chr17:17720856-17721118(-)$1	262	145	180	12.6511
ff[ccc[bb"""ddddllldddd333bbccc]fff	chr20:62904653-62904868(+)$1	215	53	88	11.9595
:==========cccbboooooobb22ccc]=====	chr22:40802069-40802321(+)$1	252	83	118	15.4622
[bb[dddd####cccooooooccc4444ddddbb]	chrX:73071853-73072071(-)$1	218	22	57	14.8502
gggga"""ccc[cccmmmmcccccc333a]ggggg	chr19:18684024-18684232(+)$1	208	111	146	12.7069
==========!!cccmmmmccc4444=========	chr7:150068803-150069051(+)$1	248	132	167	15.1717
bb[iiiiiiiii[bboooooobbiiiiiiiii]bb	chr2:70057257-70057492(+)$1	235	190	225	15.2649

#otherMatches

#Seq PSSM
CCAGAGGAGAAGAAAGGUGGGUUUGGGUUCAGCUG	chr1:32797703-32797941(+)$1	238	124	159	17.1295
gaagaggcaggaaaaaccgucuugaauugcugaca	chr18:1365646-1365891(-)$1	245	16	51	14.9233
GGUGACACGAGCCGGUUCUCUCUGGACUGGUGGCA	chr11:85779947-85780220(-)$1	273	212	247	13.3564
GGCCUCUUUGGGGACCCACGCGCCCCGAUUCGGCC	chr1:90460828-90461039(+)$1	211	153	188	12.0252
CAGUCUGCAGAAUGAGAGAGAUCACCUGUGGAAUG	chr3:121409567-121409813(-)$1	246	134	169	16.2368
UGGGAGCCACAUGUCAUUUGGGACUGGGGCGCCCU	chr19:4816562-4816799(-)$1	237	182	217	15.1165
CUUCUGGGGCCUUCCCACCCUGGACAGGGCCCCAG	chr10:119133699-119133925(-)$1	226	164	199	18.7395
AUGAUGACUUAAUUGAUAAUUUAAAAGAAGCUCAG	chr8:52773499-52773759(-)$1	260	79	114	13.0458
CUUCGAGGAAGGUGUCACCUGGACCCCUUCAUUCC	chr19:10370385-10370673(+)$1	288	172	207	12.4470
ACUAAAGGAAGGGAUCAUAGAAUCUUUUCUUAAAG	chr8:23429360-23429622(+)$1	262	3	38	17.1443
GCUUGGGAAACGCGGGAGAUGUUUGUGUGCCCCAG	chr19:46915274-46915538(-)$1	264	213	248	11.6315
GCGCUGCGGCGGCCCAGGAGAUGCGUCGCCGCGGG	chr11:9595783-9596093(+)$1	310	119	154	14.0200
cguguguguacgcguguguacgcgcguguguacAC	chr11:490596-490854(+)$1	258	192	227	14.9037
GUGUUGCUAAGAGCUGAAAAUGGCAUCUUCGUGAU	chr2:64861561-64861822(-)$1	261	62	97	12.5037
UGAAAUCUGUGGCCGAAGGACCGUCACUACAUAAC	chr6:30584508-30584717(-)$1	209	134	169	14.0965
AGAAGAAGCAACGGGUCAGGUUCCAGCUUGAGAUC	chr17:26946809-26947047(-)$1	238	24	59	14.9383
AGGUGGAUUACCCCCAUAAGAGGGGCCAAAAUUGG	chr1:16200637-16200887(+)$1	250	147	182	13.4315
ACCCUCGCAGAUUCGGCUUAGCGAGCGAGUCGGUG	chr8:125486655-125486892(-)$1	237	114	149	13.5790
GGAAGGAGCCCAAGGCAACCACCUGCUGUCCUUUC	chr3:183702451-183702773(-)$1	322	54	89	16.3598
UCUGGGGAAAUUGGCCAUGGGGUCUGAUUCCCAGU	chr3:186760430-186760701(+)$1	271	210	245	13.6288
CCAUCCUGCGGAGCUACGAGGAGCGCCUGCGGGAC	chr16:727688-727951(+)$1	263	215	250	15.8496
CUGGGCUGCCCUAUGGGCUUCCCACCGGCCGUCCA	chrX:39932377-39932647(-)$1	270	147	182	11.9443
UCUUCUCUGCCGCGCCCUCUGCGCAAGGAGGAGAC	chr1:236958794-236959011(+)$1	217	166	201	13.9430
AGGCCGCUGCCUGGCGCUCUUGGCGUGGCGGCGGC	chr10:98346462-98346670(-)$1	208	81	116	12.1558
CGAUUUUGCCUACGGCACCUACCGCAGCAAUUUCA	chr9:139360356-139360605(-)$1	249	91	126	14.1429
AGAGCUGAGGGGGCGGCUACCGUCCCCUCUGCAGG	chr1:161697297-161697553(+)$1	256	147	182	12.7962
UGCCACCUUUGCCUCCUGAAGAGCCCCCAACAAUG	chr21:34924960-34925199(+)$1	239	13	48	13.0373
AGGACCUCAAAUCCCCGUCGCUCCUAGGAUUUGCA	chr19:49140235-49140543(-)$1	308	113	148	12.4187
CUGGUGUUGGGGUGCAGCCUGGCACCGUGGCAUUA	chr5:148730685-148730933(+)$1	248	38	73	15.4416
GUAUGGAUGAUGAAGAAUUUGCUGAAGUUGAUGAA	chr2:37438917-37439172(-)$1	255	100	135	15.5119
GGUACAAGUCCAGCUGUUUCAGGUUGGAACCAGCC	chr5:39377022-39377326(-)$1	304	76	111	13.7875
GCCAAGGACACAAAGCCAAUGGGCAGGUCUGGGGC	chr1:150551306-150551510(-)$1	204	80	115	12.9444
cccggagcccgcccgccgccggggacgcgggcucg	chr7:116593433-116593708(-)$1	275	219	254	12.0992
AGAGCAUGAUGCCUCCAUCAAGUGGUAAUAUGUUU	chr19:9273409-9273672(+)$1	263	142	177	12.7702
CCUUUCUCUGAACUUAACUUAAAGAAGAAAAAGGG	chr2:71653658-71653985(+)$1	327	57	92	15.4656
AUGGGGGCUCGGACUCCAGCUCGGAGUCUGAGCCU	chr14:65543144-65543382(-)$1	238	109	144	13.8944
CAUCAACCUCGGACCUCAGGUGGCUGAAGGGGAGA	chr1:19934481-19934733(+)$1	252	167	202	12.4926
UUGGAAGGGCCAGGGACGCAGCUCCCCUUGCAGCG	chr2:12857275-12857520(+)$1	245	150	185	14.4565
CGGCAUUUUUCGUCGGGAUCCCCGCAAGGAUGAGU	chr11:16760134-16760400(+)$1	266	162	197	11.6968
GUUUUGGGGUUUGGGGGCUACUUUGAGUCCCAGAA	chr7:138765307-138765538(-)$1	231	62	97	14.7774
CGGGUGUCUGGAGAGCGUUCACUCUCCCAGGCCAA	chr16:2281594-2281844(+)$1	250	45	80	12.1257
GGAUGGGGGAGAAAGACACGGAGCCUUCUUCCUCA	chr1:180471073-180471393(-)$1	320	235	270	12.4270
AGCCAUAUCCUCUGAGCCUCaugacagggccggga	chr17:17720856-17721118(-)$1	262	145	180	12.6511
GAGAGUUCGCCGCCGUCGAAUGGAAACGAUUGUCU	chr20:62904653-62904868(+)$1	215	53	88	11.9595
CGCAUCUGGGACCUGUUUUUCUACGAGGGCUCCCG	chr22:40802069-40802321(+)$1	252	83	118	15.4622
CCCUCUGAACCCCCAACACUCUGGCCCAUCGGGGU	chrX:73071853-73072071(-)$1	218	22	57	14.8502
CUGGCAAAACCAUCACCCUUGAGGUCGAGCCCAGU	chr19:18684024-18684232(+)$1	208	111	146	12.7069
GGCCCUGGAGGAGGCCGCAGCCAAGGCUCUggggc	chr7:150068803-150069051(+)$1	248	132	167	15.1717
UGGGGAGCGCCUUGGGAGACGCCAGGUGUUCCGCA	chr2:70057257-70057492(+)$1	235	190	225	15.2649

#DB
((((..(((...(((......)))...)))..)))	chr1:32797703-32797941(+)$1	1	124	159	17.1295
((.(.(((((...((......))...)))))..).	chr18:1365646-1365891(-)$1	1	16	51	14.9233
.((..(((.((((((......)))).)).)))...	chr11:85779947-85780220(-)$1	1	212	247	13.3564
((((...((((((.(......)))))))...))))	chr1:90460828-90461039(+)$1	1	153	188	12.0252
((.(((((((..(((......))).))))))).))	chr3:121409567-121409813(-)$1	1	134	169	16.2368
)(((.(((.(..(((......)))..)))).))).	chr19:4816562-4816799(-)$1	1	182	217	15.1165
))(((((((((((((......)))..)))))))))	chr10:119133699-119133925(-)$1	1	164	199	18.7395
.(((.(.(((..((((....))))...))))))).	chr8:52773499-52773759(-)$1	1	79	114	13.0458
(((((.((((((.(((.....))).)))....)))	chr19:10370385-10370673(+)$1	1	172	207	12.4470
(((..((((((((((......))))))))))..))	chr8:23429360-23429622(+)$1	1	3	38	17.1443
(((((((..(((((((.....)))))))..)))))	chr19:46915274-46915538(-)$1	1	213	248	11.6315
((.((((((((((.((.....)).)))))))))).	chr11:9595783-9596093(+)$1	1	119	154	14.0200
(((((((((((((((((....))))))))))))))	chr11:490596-490854(+)$1	1	192	227	14.9037
(((((((.(((((((......))).)))).)))).	chr2:64861561-64861822(-)$1	1	62	97	12.5037
((((...(((((.((......))...)))))....	chr6:30584508-30584717(-)$1	1	134	169	14.0965
(....((((...(((......))).))))....))	chr17:26946809-26947047(-)$1	1	24	59	14.9383
)))))))))))((((......))))(((....)))	chr1:16200637-16200887(+)$1	1	147	182	13.4315
((((((((....(((......))))))))..))))	chr8:125486655-125486892(-)$1	1	114	149	13.5790
(((((((.....(((......)))....)))))))	chr3:183702451-183702773(-)$1	1	54	89	16.3598
.(((((((....((((....))))...))))))).	chr3:186760430-186760701(+)$1	1	210	245	13.6288
))))(((((((.(((......)))..)))))))((	chr16:727688-727951(+)$1	1	215	250	15.8496
((((((.(((...((((...))))..))).)))))	chrX:39932377-39932647(-)$1	1	147	182	11.9443
((((((((...((((.....))))..)))))))))	chr1:236958794-236959011(+)$1	1	166	201	13.9430
.((((((((((..(((((...))))))))))))))	chr10:98346462-98346670(-)$1	1	81	116	12.1558
)((..((((...(((......)))..))))..)).	chr9:139360356-139360605(-)$1	1	91	126	14.1429
.(((((((((((((((...))))))))))....))	chr1:161697297-161697553(+)$1	1	147	182	12.7962
((.((...(((.(((.....)))....)))...))	chr21:34924960-34925199(+)$1	1	13	48	13.0373
((((((((((((((..(......)..))))))).)	chr19:49140235-49140543(-)$1	1	113	148	12.4187
(((((((((.(((((......))))).))))))))	chr5:148730685-148730933(+)$1	1	38	73	15.4416
.(((.(((.....((......))...))).)))..	chr2:37438917-37439172(-)$1	1	100	135	15.5119
(((.....(((((((......)))))))....)))	chr5:39377022-39377326(-)$1	1	76	111	13.7875
.(((..(((.(...(((....))).))))))).))	chr1:150551306-150551510(-)$1	1	80	115	12.9444
((((.(((((((...((....))...)))))))))	chr7:116593433-116593708(-)$1	1	219	254	12.0992
.(((((((.((((.(......).)))).)))))))	chr19:9273409-9273672(+)$1	1	142	177	12.7702
(((((.(((...(((......))).))).)))))(	chr2:71653658-71653985(+)$1	1	57	92	15.4656
.)))(((((((((((((.....)))))))))))))	chr14:65543144-65543382(-)$1	1	109	144	13.8944
((((((((((((.((......))))).))).....	chr1:19934481-19934733(+)$1	1	167	202	12.4926
(((.(((((...(((......)))))))).)))))	chr2:12857275-12857520(+)$1	1	150	185	14.4565
.(((((((.((.(((((...))))..).)).))))	chr11:16760134-16760400(+)$1	1	162	197	11.6968
.(((((((((((((((....)))))))))))))))	chr7:138765307-138765538(-)$1	1	62	97	14.7774
(((((((((((((((......)))).))))))...	chr16:2281594-2281844(+)$1	1	45	80	12.1257
.(.((((((((((.(........).))))))))))	chr1:180471073-180471393(-)$1	1	235	270	12.4270
.(((...((...(((...))).))...))).))))	chr17:17720856-17721118(-)$1	1	145	180	12.6511
((.(((.((...((((...))))...))))).)))	chr20:62904653-62904868(+)$1	1	53	88	11.9595
.(((((((((((((((......))..))).)))))	chr22:40802069-40802321(+)$1	1	83	118	15.4622
.((.((((....(((......)))....)))))).	chrX:73071853-73072071(-)$1	1	22	57	14.8502
(((((...(((.(((....))))))...).)))))	chr19:18684024-18684232(+)$1	1	111	146	12.7069
((((((((((..(((....)))....)))))))))	chr7:150068803-150069051(+)$1	1	132	167	15.1717
((.(((((((((.((......))))))))))).))	chr2:70057257-70057492(+)$1	1	190	225	15.2649

#PSSM
[ : 0.14	f : 0.14	e : 0.12	c : 0.10	b : 0.08	= : 0.08	: : 0.08	d : 0.06	g : 0.06	$ : 0.04	I : 0.02	i : 0.02	] : 0.02	! : 0.02	
c : 0.20	e : 0.14	f : 0.14	= : 0.14	b : 0.12	g : 0.12	d : 0.06	# : 0.02	i : 0.02	a : 0.02	
c : 0.18	= : 0.16	e : 0.14	[ : 0.14	g : 0.12	f : 0.08	b : 0.06	d : 0.06	# : 0.02	i : 0.02	
= : 0.20	c : 0.16	e : 0.14	g : 0.14	! : 0.06	d : 0.06	f : 0.06	i : 0.04	[ : 0.04	a : 0.02	# : 0.02	b : 0.02	$ : 0.02	
= : 0.22	g : 0.14	e : 0.12	! : 0.10	[ : 0.10	" : 0.06	f : 0.06	d : 0.04	i : 0.04	# : 0.02	b : 0.02	$ : 0.02	c : 0.02	a : 0.02	
= : 0.24	g : 0.16	" : 0.10	e : 0.08	c : 0.08	d : 0.08	f : 0.06	! : 0.04	[ : 0.04	i : 0.04	a : 0.02	b : 0.02	$ : 0.02	
= : 0.26	c : 0.16	g : 0.16	" : 0.10	d : 0.08	e : 0.06	[ : 0.06	i : 0.04	b : 0.02	$ : 0.02	f : 0.02	
= : 0.26	c : 0.20	g : 0.14	e : 0.08	d : 0.06	f : 0.04	$ : 0.04	i : 0.04	" : 0.04	b : 0.04	! : 0.02	[ : 0.02	
= : 0.26	c : 0.18	g : 0.10	[ : 0.08	e : 0.06	d : 0.06	# : 0.06	f : 0.04	$ : 0.04	b : 0.04	! : 0.02	" : 0.02	i : 0.02	
= : 0.24	" : 0.16	g : 0.12	c : 0.12	# : 0.06	e : 0.04	b : 0.04	f : 0.04	d : 0.04	$ : 0.04	[ : 0.04	a : 0.02	i : 0.02	
= : 0.22	" : 0.20	g : 0.10	! : 0.08	c : 0.08	# : 0.06	b : 0.04	f : 0.04	d : 0.04	e : 0.04	$ : 0.04	a : 0.02	i : 0.02	
" : 0.20	= : 0.16	d : 0.12	! : 0.10	g : 0.08	[ : 0.08	c : 0.06	# : 0.06	e : 0.04	$ : 0.04	f : 0.02	i : 0.02	
c : 0.36	d : 0.16	= : 0.14	" : 0.08	[ : 0.08	g : 0.06	f : 0.02	! : 0.02	e : 0.02	$ : 0.02	a : 0.02	
c : 0.38	d : 0.18	b : 0.10	= : 0.10	[ : 0.08	g : 0.06	e : 0.04	" : 0.04	
c : 0.38	d : 0.18	b : 0.14	= : 0.10	a : 0.06	g : 0.04	e : 0.04	! : 0.02	" : 0.02	
o : 0.53	d : 0.10	= : 0.08	b : 0.06	c : 0.04	n : 0.04	m : 0.04	g : 0.02	e : 0.02	! : 0.02	q : 0.02	l : 0.02	
o : 0.55	m : 0.10	n : 0.10	l : 0.06	= : 0.04	d : 0.04	e : 0.02	a : 0.02	c : 0.02	b : 0.02	q : 0.02	
o : 0.57	m : 0.16	n : 0.12	l : 0.10	e : 0.02	q : 0.02	
o : 0.57	m : 0.16	n : 0.12	l : 0.10	q : 0.02	c : 0.02	
o : 0.57	m : 0.12	n : 0.12	l : 0.06	c : 0.06	= : 0.02	q : 0.02	d : 0.02	
o : 0.57	d : 0.12	n : 0.08	c : 0.08	m : 0.06	= : 0.04	l : 0.02	q : 0.02	
c : 0.36	d : 0.18	b : 0.14	= : 0.08	a : 0.04	g : 0.04	e : 0.04	o : 0.04	n : 0.02	q : 0.02	] : 0.02	
c : 0.34	b : 0.18	d : 0.18	= : 0.10	g : 0.04	e : 0.04	f : 0.02	o : 0.02	] : 0.02	q : 0.02	4 : 0.02	
c : 0.34	d : 0.18	3 : 0.10	= : 0.10	g : 0.04	e : 0.04	4 : 0.04	a : 0.04	b : 0.04	f : 0.02	] : 0.02	i : 0.02	
3 : 0.18	2 : 0.18	] : 0.14	= : 0.12	d : 0.08	e : 0.08	4 : 0.08	g : 0.04	c : 0.04	f : 0.02	i : 0.02	
3 : 0.20	2 : 0.18	= : 0.14	c : 0.08	e : 0.08	4 : 0.08	g : 0.06	d : 0.06	] : 0.04	f : 0.02	a : 0.02	i : 0.02	
= : 0.20	c : 0.14	g : 0.12	3 : 0.10	e : 0.08	d : 0.08	4 : 0.06	b : 0.04	f : 0.04	a : 0.04	i : 0.04	] : 0.04	
c : 0.26	= : 0.22	g : 0.14	e : 0.08	d : 0.06	b : 0.04	f : 0.04	4 : 0.04	i : 0.04	] : 0.04	3 : 0.02	
c : 0.22	= : 0.22	g : 0.14	e : 0.08	d : 0.08	] : 0.04	4 : 0.04	i : 0.04	3 : 0.02	2 : 0.02	m : 0.02	b : 0.02	f : 0.02	a : 0.02	
= : 0.20	c : 0.18	g : 0.14	] : 0.12	4 : 0.08	e : 0.06	2 : 0.04	i : 0.04	d : 0.04	3 : 0.02	m : 0.02	b : 0.02	f : 0.02	
= : 0.22	g : 0.18	c : 0.08	4 : 0.08	2 : 0.06	e : 0.06	] : 0.06	f : 0.06	3 : 0.04	d : 0.04	i : 0.04	a : 0.02	m : 0.02	> : 0.02	
g : 0.20	= : 0.20	c : 0.10	d : 0.10	4 : 0.10	2 : 0.08	f : 0.06	i : 0.04	m : 0.02	3 : 0.02	e : 0.02	> : 0.02	] : 0.02	
= : 0.20	g : 0.18	c : 0.12	d : 0.08	3 : 0.06	] : 0.06	4 : 0.06	f : 0.06	e : 0.04	2 : 0.04	b : 0.04	i : 0.02	> : 0.02	
= : 0.20	c : 0.16	b : 0.12	g : 0.12	d : 0.08	f : 0.08	e : 0.06	3 : 0.04	4 : 0.04	a : 0.02	i : 0.02	] : 0.02	> : 0.02	
= : 0.18	c : 0.12	] : 0.10	b : 0.10	g : 0.10	d : 0.08	f : 0.08	4 : 0.06	e : 0.04	3 : 0.04	: : 0.04	i : 0.02	> : 0.02	

#score	683.5049149180411
#seq	49
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_CDS_m1_run1.txt

#BEAR
ddddccctttttttttttccc]d	chr1:11140785-11141060(-)$1	275	197	220	19.5485
eddddvvvvvvvvvvvvvdddd]	chrX:53588643-53588918(-)$1	275	25	48	22.6457
eeeee^^^^^^^^^^^^^^^^^^	chr11:129992098-129992328(+)$1	230	191	214	16.9064
f[a^^^^^^^^^^^^^^^^^^a]	chr8:37732083-37732375(-)$1	292	124	147	16.3975
:ddddwwwwwwwwwwwwwwdddd	chr2:99980739-99980978(+)$1	239	68	91	20.7511
:ddddyyyyyyyyyyyyyyyydd	chr1:29319858-29320108(+)$1	250	88	111	19.5410
=====vvvvvvvvvvvvv=====	chr20:57561048-57561323(+)$1	275	50	73	22.3219
^^^^^^^^^^^^^^^^^^^^^a2	chr3:196214183-196214493(-)$1	310	144	167	16.0113
gg!!ccctttttttttttccc22	chr9:100774632-100774854(+)$1	222	67	90	20.0194
eeeee^^^^^^^^^^^^^^^^^^	chr7:72891859-72892137(-)$1	278	55	78	16.9064
!ddddvvvvvvvvvvvvvdddd2	chr18:13731752-13732032(+)$1	280	17	40	22.7368
ggcccvvvvvvvvvvvvvccc22	chr2:54858424-54858731(+)$1	307	20	43	22.5982
eeeeewwwwwwwwwwwwwweeee	chr1:39750868-39751108(+)$1	240	63	86	21.8198
::cccwwwwwwwwwwwwwwccc:	chr12:6711510-6711744(-)$1	234	128	151	19.1375
fffffxxxxxxxxxxxxxxxfff	chrX:153178677-153178968(-)$1	291	255	278	16.7884
^^^^^^^^^^^^^^^^^^^ccc2	chr13:98668882-98669152(+)$1	270	204	227	15.8538
e!!ddddtttttttttttdddd]	chr19:2244458-2244695(+)$1	237	63	86	19.7210
eeeee^^^^^^^^^^^^^^^^^^	chr17:42286744-42287011(-)$1	267	215	238	16.9064
"""ddddtttttttttttdddd3	chr1:70716368-70716692(+)$1	324	139	162	19.5636
gggggvvvvvvvvvvvvvggggg	chr16:722388-722602(+)$1	214	93	116	22.0091
fffffwwwwwwwwwwwwwwffff	chr2:232326578-232326829(-)$1	251	210	233	20.4508
!ddddvvvvvvvvvvvvvdddd]	chr7:155504008-155504250(+)$1	242	165	188	22.7396
:eeeeettttttttttteeeeeb	chr15:91524903-91525201(-)$1	298	7	30	18.7393
ddddwwwwwwwwwwwwwwdddd7	chrX:53439048-53439296(-)$1	248	211	234	20.7911
fffffyyyyyyyyyyyyyyyyff	chr2:102472404-102472688(+)$1	284	109	132	19.5762
=======ttttttttttt=====	chr5:138700152-138700374(+)$1	222	20	43	19.3778
eeeeewwwwwwwwwwwwwweeee	chr3:37370353-37370591(+)$1	238	155	178	21.8198
eeeeevvvvvvvvvvvvveeeee	chr15:93540191-93540421(+)$1	230	0	23	22.5222
eeeeewwwwwwwwwwwwwweeee	chr15:63352973-63353240(+)$1	267	8	31	21.8198
:dddduuuuuuuuuuuudddd::	chr5:71491886-71492179(+)$1	293	60	83	18.7012
:eeeeettttttttttteeeeeb	chr5:157232832-157233073(-)$1	241	100	123	18.7393
hhhhhvvvvvvvvvvvvvhhhhh	chr9:100777582-100777870(+)$1	288	197	220	19.9174
hhhhhvvvvvvvvvvvvvhhhhh	chr16:89350278-89350557(-)$1	279	202	225	19.9174
eeeee^^^^^^^^^^^^^^^^^^	chr14:102549277-102549534(-)$1	257	59	82	16.9064
::cccvvvvvvvvvvvvvccc::	chr7:104782541-104782868(-)$1	327	226	249	19.0944
!!cccvvvvvvvvvvvvvccc44	chr17:77808449-77808700(-)$1	251	202	225	22.9457
:dddduuuuuuuuuuuudddd::	chr6:31926050-31926295(-)$1	245	94	117	18.7012
dddddduuuuuuuuuuuudddd2	chr17:7849081-7849342(+)$1	261	203	226	21.4998
:eeeeettttttttttteeeee:	chr17:27003165-27003429(+)$1	264	128	151	18.3139
b[bbyyyyyyyyyyyyyyyybb]	chr2:70129341-70129663(+)$1	322	264	287	19.0986
$ddddvvvvvvvvvvvvvdddd8	chr3:9489509-9489768(+)$1	259	162	185	22.0997
eeeeeuuuuuuuuuuuueeeee2	chr20:61912565-61912782(+)$1	217	161	184	21.4693
e!!cccuuuuuuuuuuuuccc22	chr7:127013394-127013711(-)$1	317	99	122	21.9514
==[bbvvvvvvvvvvvvvbb]==	chr1:186321043-186321316(-)$1	273	239	262	21.4136
e!!cccuuuuuuuuuuuuccc22	chr1:24989050-24989305(+)$1	255	64	87	21.9514
!eeeeeuuuuuuuuuuuueeeee	chr1:94341100-94341363(-)$1	263	171	194	21.6250
gggggyyyyyyyyyyyyyyyygg	chr9:15485905-15486167(-)$1	262	12	35	20.2969
fff[bbuuuuuuuuuuuubb333	chr12:124862692-124862950(-)$1	258	12	35	20.8319
[ddddtttttttttttddddeee	chr14:23549129-23549418(-)$1	289	55	78	18.6904
dd!!bbvvvvvvvvvvvvvbb22	chr2:232325142-232325365(-)$1	223	125	148	20.8595
eeeeeuuuuuuuuuuuueeeee4	chr20:61542027-61542269(-)$1	242	89	112	21.4967
!!dddduuuuuuuuuuuudddd6	chr14:56078636-56078964(+)$1	328	80	103	21.4452
fffffyyyyyyyyyyyyyyyyff	chr4:140257901-140258158(+)$1	257	44	67	19.5762
fffffwwwwwwwwwwwwwwffff	chr1:1650717-1650995(-)$1	278	48	71	20.4508
dd!!avvvvvvvvvvvvva22dd	chr1:70716276-70716568(+)$1	292	183	206	21.7651
:eeeeeuuuuuuuuuuuueeeee	chr6:159188367-159188614(-)$1	247	58	81	20.7777
ggggg^^^^^^^^^^^^^^^^^^	chrM:11351-11560(+)$1	209	128	151	16.5912
iiiiivvvvvvvvvvvvviiiii	chr11:47446637-47446893(-)$1	256	200	223	22.0185
hhh[bbuuuuuuuuuuuubb333	chr1:27269384-27269622(+)$1	238	192	215	20.5734

#otherMatches

#Seq PSSM
CCUGGAGGGAUAAAACAGCUCGC	chr1:11140785-11141060(-)$1	275	197	220	19.5485
CCCUUAAGGAGGAUGAUGAAGGU	chrX:53588643-53588918(-)$1	275	25	48	22.6457
ggaggaCCGAGAUUACUACUAUG	chr11:129992098-129992328(+)$1	230	191	214	16.9064
GGGGGUUAAGCCGGGGGAGGACG	chr8:37732083-37732375(-)$1	292	124	147	16.3975
AGGGAAACUUUUAACUAAAUCCC	chr2:99980739-99980978(+)$1	239	68	91	20.7511
AAAGCAGAAACAGAAUUAAAAGC	chr1:29319858-29320108(+)$1	250	88	111	19.5410
UAUUUGUAUUAAUGAAAAAAAUA	chr20:57561048-57561323(+)$1	275	50	73	22.3219
AGGCAGAAAAAAGGCGAAGAGCG	chr3:196214183-196214493(-)$1	310	144	167	16.0113
UAGGAAGAAGAAUUUGGACUUGA	chr9:100774632-100774854(+)$1	222	67	90	20.0194
UGCUUGAGAGAUUAGAAAAACAG	chr7:72891859-72892137(-)$1	278	55	78	16.9064
AUCCUGAAAUUGUCCCAGAGGAA	chr18:13731752-13732032(+)$1	280	17	40	22.7368
GGAGGACAUGCCAAACACCCUGA	chr2:54858424-54858731(+)$1	307	20	43	22.5982
GAACCUUGCACAUGACUAUGGUU	chr1:39750868-39751108(+)$1	240	63	86	21.8198
AAGCUCAAGAAGAAGAAAAAGCC	chr12:6711510-6711744(-)$1	234	128	151	19.1375
UGCAGGCCAAGCACGAGAAGCUG	chrX:153178677-153178968(-)$1	291	255	278	16.7884
AUUAAUUGUCAACCUCAUUGUAA	chr13:98668882-98669152(+)$1	270	204	227	15.8538
GCCCCUGUUCUUCCCCUCCAGGA	chr19:2244458-2244695(+)$1	237	63	86	19.7210
GCCAGAAGGAGCACUACAAAAAG	chr17:42286744-42287011(-)$1	267	215	238	16.9064
CCAACUGUAUACCUGCAUCAGUG	chr1:70716368-70716692(+)$1	324	139	162	19.5636
CCCUCAGCACCAGGACACGAGGG	chr16:722388-722602(+)$1	214	93	116	22.0091
CUGUCACUCCAGGCAAAAAGGCA	chr2:232326578-232326829(-)$1	251	210	233	20.4508
AAAGCAUagauggccccagcuuc	chr7:155504008-155504250(+)$1	242	165	188	22.7396
CAUCUUGCAACUAGAAAAAGAUU	chr15:91524903-91525201(-)$1	298	7	30	18.7393
CACUACAAGAAGCGUAAAGGUGA	chrX:53439048-53439296(-)$1	248	211	234	20.7911
cgucuagaggaguuggagagaag	chr2:102472404-102472688(+)$1	284	109	132	19.5762
GGUUUAGUUCAAGAUAUUUUAAG	chr5:138700152-138700374(+)$1	222	20	43	19.3778
UCAGUUACUUAAAAAAAUUGCUG	chr3:37370353-37370591(+)$1	238	155	178	21.8198
GGACCAGGGAAAAGGAGAGGUCC	chr15:93540191-93540421(+)$1	230	0	23	22.5222
AUGGGAUCUGAUCUCUACCCCCA	chr15:63352973-63353240(+)$1	267	8	31	21.8198
ACAUUGAAAAAUUUGAAGAUGAA	chr5:71491886-71492179(+)$1	293	60	83	18.7012
UUCCAAAACCAUUGAUCUUGGAG	chr5:157232832-157233073(-)$1	241	100	123	18.7393
UGUUUAAAAAAAAAAAAAAGGUA	chr9:100777582-100777870(+)$1	288	197	220	19.9174
CAGGGACAUGAAGAGCGACUCUG	chr16:89350278-89350557(-)$1	279	202	225	19.9174
cuuccagaggaugaagaagagaa	chr14:102549277-102549534(-)$1	257	59	82	16.9064
ACGACAUAAAAUUCCCGAGUCAC	chr7:104782541-104782868(-)$1	327	226	249	19.0944
GGCGCAGAGGAGAAGAAGGUGGA	chr17:77808449-77808700(-)$1	251	202	225	22.9457
UGAGCGAGGAAGAGGAGGCUCUG	chr6:31926050-31926295(-)$1	245	94	117	18.7012
AGACCUCACUUCAUCCACAGGUA	chr17:7849081-7849342(+)$1	261	203	226	21.4998
AGGGUGAAAUCCGAGUGCGCCCC	chr17:27003165-27003429(+)$1	264	128	151	18.3139
cugcuguuucuguuuccucugcu	chr2:70129341-70129663(+)$1	322	264	287	19.0986
AUACCCCAAAACCAAAAAGGUAA	chr3:9489509-9489768(+)$1	259	162	185	22.0997
GUCCCCACCAGGCCCUCGGGACA	chr20:61912565-61912782(+)$1	217	161	184	21.4693
CUAACUCUCCUAGUAAAAAGUAU	chr7:127013394-127013711(-)$1	317	99	122	21.9514
AUGUAUAAAAGUUAAAUUUAGAU	chr1:186321043-186321316(-)$1	273	239	262	21.4136
ACCUAAUGUAAUAUUUUUUUAAU	chr1:24989050-24989305(+)$1	255	64	87	21.9514
AUUGUGCUGUUAGGUUUUCACAG	chr1:94341100-94341363(-)$1	263	171	194	21.6250
UAAACGUGCUUGUAACUUUUAGU	chr9:15485905-15486167(-)$1	262	12	35	20.2969
UGCCCCAGGAGAAGGAGAGGAAC	chr12:124862692-124862950(-)$1	258	12	35	20.8319
UAUCUCCUCCUAAUACAGAUGCU	chr14:23549129-23549418(-)$1	289	55	78	18.6904
GAAAUGGCCAAACAGAAAGCAGC	chr2:232325142-232325365(-)$1	223	125	148	20.8595
AGGGUUACGACCCCAACGCCCUG	chr20:61542027-61542269(-)$1	242	89	112	21.4967
CCACCUUCUUCCCUAUUUAGGUU	chr14:56078636-56078964(+)$1	328	80	103	21.4452
auuuuuaauauuuauuuuuuuaa	chr4:140257901-140258158(+)$1	257	44	67	19.5762
UGCUUUUCCGCACUUUCUCAAGC	chr1:1650717-1650995(-)$1	278	48	71	20.4508
AUGAAGAAGACAUGGAUAUGAGU	chr1:70716276-70716568(+)$1	292	183	206	21.7651
UGCUUUCCAAAGGCCAAAGAAGC	chr6:159188367-159188614(-)$1	247	58	81	20.7777
CUAUGGUAUAAUACGCCUCACAC	chrM:11351-11560(+)$1	209	128	151	16.5912
CCUUGUCUCCAACGUCAUCGAGG	chr11:47446637-47446893(-)$1	256	200	223	22.0185
CUAGCCUGGGGUGUUGAUGGAAG	chr1:27269384-27269622(+)$1	238	192	215	20.5734

#DB
(((((((...........))).)	chr1:11140785-11141060(-)$1	1	197	220	19.5485
(((((.............)))).	chrX:53588643-53588918(-)$1	1	25	48	22.6457
(((((..................	chr11:129992098-129992328(+)$1	1	191	214	16.9064
(.(..................).	chr8:37732083-37732375(-)$1	1	124	147	16.3975
.((((..............))))	chr2:99980739-99980978(+)$1	1	68	91	20.7511
.((((................))	chr1:29319858-29320108(+)$1	1	88	111	19.5410
(((((.............)))))	chr20:57561048-57561323(+)$1	1	50	73	22.3219
.....................).	chr3:196214183-196214493(-)$1	1	144	167	16.0113
((..(((...........)))..	chr9:100774632-100774854(+)$1	1	67	90	20.0194
(((((..................	chr7:72891859-72892137(-)$1	1	55	78	16.9064
.((((.............)))).	chr18:13731752-13732032(+)$1	1	17	40	22.7368
(((((.............)))..	chr2:54858424-54858731(+)$1	1	20	43	22.5982
(((((..............))))	chr1:39750868-39751108(+)$1	1	63	86	21.8198
..(((..............))).	chr12:6711510-6711744(-)$1	1	128	151	19.1375
(((((...............)))	chrX:153178677-153178968(-)$1	1	255	278	16.7884
...................))).	chr13:98668882-98669152(+)$1	1	204	227	15.8538
(..((((...........)))).	chr19:2244458-2244695(+)$1	1	63	86	19.7210
(((((..................	chr17:42286744-42287011(-)$1	1	215	238	16.9064
...((((...........)))).	chr1:70716368-70716692(+)$1	1	139	162	19.5636
(((((.............)))))	chr16:722388-722602(+)$1	1	93	116	22.0091
(((((..............))))	chr2:232326578-232326829(-)$1	1	210	233	20.4508
.((((.............)))).	chr7:155504008-155504250(+)$1	1	165	188	22.7396
.(((((...........)))))(	chr15:91524903-91525201(-)$1	1	7	30	18.7393
((((..............)))).	chrX:53439048-53439296(-)$1	1	211	234	20.7911
(((((................))	chr2:102472404-102472688(+)$1	1	109	132	19.5762
(((((((...........)))))	chr5:138700152-138700374(+)$1	1	20	43	19.3778
(((((..............))))	chr3:37370353-37370591(+)$1	1	155	178	21.8198
(((((.............)))))	chr15:93540191-93540421(+)$1	1	0	23	22.5222
(((((..............))))	chr15:63352973-63353240(+)$1	1	8	31	21.8198
.((((............))))..	chr5:71491886-71492179(+)$1	1	60	83	18.7012
.(((((...........)))))(	chr5:157232832-157233073(-)$1	1	100	123	18.7393
(((((.............)))))	chr9:100777582-100777870(+)$1	1	197	220	19.9174
(((((.............)))))	chr16:89350278-89350557(-)$1	1	202	225	19.9174
(((((..................	chr14:102549277-102549534(-)$1	1	59	82	16.9064
..(((.............)))..	chr7:104782541-104782868(-)$1	1	226	249	19.0944
..(((.............)))..	chr17:77808449-77808700(-)$1	1	202	225	22.9457
.((((............))))..	chr6:31926050-31926295(-)$1	1	94	117	18.7012
((((((............)))).	chr17:7849081-7849342(+)$1	1	203	226	21.4998
.(((((...........))))).	chr17:27003165-27003429(+)$1	1	128	151	18.3139
(.((................)).	chr2:70129341-70129663(+)$1	1	264	287	19.0986
.((((.............)))).	chr3:9489509-9489768(+)$1	1	162	185	22.0997
(((((............))))).	chr20:61912565-61912782(+)$1	1	161	184	21.4693
(..(((............)))..	chr7:127013394-127013711(-)$1	1	99	122	21.9514
((.((.............)).))	chr1:186321043-186321316(-)$1	1	239	262	21.4136
(..(((............)))..	chr1:24989050-24989305(+)$1	1	64	87	21.9514
.(((((............)))))	chr1:94341100-94341363(-)$1	1	171	194	21.6250
(((((................))	chr9:15485905-15486167(-)$1	1	12	35	20.2969
(((.((............))...	chr12:124862692-124862950(-)$1	1	12	35	20.8319
.((((...........)))))))	chr14:23549129-23549418(-)$1	1	55	78	18.6904
((..((.............))..	chr2:232325142-232325365(-)$1	1	125	148	20.8595
(((((............))))).	chr20:61542027-61542269(-)$1	1	89	112	21.4967
..((((............)))).	chr14:56078636-56078964(+)$1	1	80	103	21.4452
(((((................))	chr4:140257901-140258158(+)$1	1	44	67	19.5762
(((((..............))))	chr1:1650717-1650995(-)$1	1	48	71	20.4508
((..(.............)..))	chr1:70716276-70716568(+)$1	1	183	206	21.7651
.(((((............)))))	chr6:159188367-159188614(-)$1	1	58	81	20.7777
(((((..................	chrM:11351-11560(+)$1	1	128	151	16.5912
(((((.............)))))	chr11:47446637-47446893(-)$1	1	200	223	22.0185
(((.((............))...	chr1:27269384-27269622(+)$1	1	192	215	20.5734

#PSSM
e : 0.23	: : 0.16	f : 0.11	d : 0.08	g : 0.08	! : 0.08	= : 0.05	h : 0.05	^ : 0.03	" : 0.01	b : 0.01	$ : 0.01	[ : 0.01	i : 0.01	
e : 0.25	d : 0.23	f : 0.10	g : 0.08	! : 0.08	= : 0.05	h : 0.05	[ : 0.03	^ : 0.03	: : 0.03	" : 0.01	i : 0.01	
e : 0.25	d : 0.22	! : 0.10	f : 0.10	c : 0.06	g : 0.05	h : 0.05	= : 0.03	^ : 0.03	a : 0.01	" : 0.01	b : 0.01	[ : 0.01	i : 0.01	
d : 0.25	e : 0.25	c : 0.10	f : 0.08	^ : 0.05	! : 0.05	g : 0.05	= : 0.03	h : 0.03	b : 0.03	[ : 0.03	i : 0.01	
e : 0.25	d : 0.22	c : 0.13	f : 0.08	b : 0.06	^ : 0.05	g : 0.05	= : 0.03	h : 0.03	w : 0.01	y : 0.01	a : 0.01	i : 0.01	
v : 0.25	^ : 0.13	w : 0.13	y : 0.08	e : 0.08	c : 0.06	d : 0.06	u : 0.06	b : 0.05	x : 0.01	= : 0.01	t : 0.01	
v : 0.27	u : 0.20	^ : 0.13	w : 0.13	y : 0.08	t : 0.06	c : 0.03	d : 0.03	x : 0.01	= : 0.01	
v : 0.27	u : 0.20	t : 0.15	^ : 0.13	w : 0.13	y : 0.08	x : 0.01	
v : 0.27	u : 0.20	t : 0.15	^ : 0.13	w : 0.13	y : 0.08	x : 0.01	
v : 0.27	u : 0.20	t : 0.15	^ : 0.13	w : 0.13	y : 0.08	x : 0.01	
v : 0.27	u : 0.20	t : 0.15	^ : 0.13	w : 0.13	y : 0.08	x : 0.01	
v : 0.27	u : 0.20	t : 0.15	^ : 0.13	w : 0.13	y : 0.08	x : 0.01	
v : 0.27	u : 0.20	t : 0.15	^ : 0.13	w : 0.13	y : 0.08	x : 0.01	
v : 0.27	u : 0.20	t : 0.15	^ : 0.13	w : 0.13	y : 0.08	x : 0.01	
v : 0.27	u : 0.20	t : 0.15	^ : 0.13	w : 0.13	y : 0.08	x : 0.01	
v : 0.27	u : 0.20	t : 0.15	^ : 0.13	w : 0.13	y : 0.08	x : 0.01	
v : 0.27	u : 0.20	t : 0.13	^ : 0.13	w : 0.13	y : 0.08	x : 0.01	d : 0.01	
v : 0.27	^ : 0.13	w : 0.13	u : 0.13	t : 0.08	y : 0.08	e : 0.08	d : 0.05	x : 0.01	
d : 0.20	^ : 0.13	e : 0.13	c : 0.11	w : 0.11	y : 0.08	b : 0.05	= : 0.03	h : 0.03	x : 0.01	g : 0.01	v : 0.01	a : 0.01	i : 0.01	
d : 0.22	e : 0.18	c : 0.15	^ : 0.11	y : 0.08	b : 0.06	= : 0.03	f : 0.03	h : 0.03	x : 0.01	g : 0.01	2 : 0.01	i : 0.01	
d : 0.20	e : 0.20	c : 0.15	^ : 0.11	y : 0.06	f : 0.05	= : 0.03	h : 0.03	b : 0.03	3 : 0.03	g : 0.01	] : 0.01	2 : 0.01	i : 0.01	
d : 0.20	e : 0.20	^ : 0.08	2 : 0.08	f : 0.08	= : 0.05	: : 0.05	a : 0.03	c : 0.03	g : 0.03	h : 0.03	3 : 0.03	] : 0.01	4 : 0.01	b : 0.01	i : 0.01	
2 : 0.16	e : 0.11	] : 0.08	^ : 0.08	: : 0.08	f : 0.08	d : 0.06	= : 0.05	3 : 0.05	g : 0.03	b : 0.03	h : 0.03	4 : 0.03	7 : 0.01	8 : 0.01	6 : 0.01	i : 0.01	

#score	1185.742767283512
#seq	59
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_transcript_m1_run1.txt

#BEAR
gggggg^^^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr2:178215029-178215267(-)$1	238	79	116	42.5711
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee5	chrX:47515999-47516262(-)$1	263	118	155	46.3129
(((dddd^^^^^^^^^^^^^^^^^^^^^^^^dddd99	chr7:138765844-138766084(-)$1	240	143	180	41.3596
eee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:9744-9973(+)$1	229	93	130	44.7877
ggggggg^^^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr22:50004057-50004277(-)$1	220	142	179	42.6539
:::eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^ee	chr21:46899064-46899272(+)$1	208	168	205	41.5915
!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc2	chr5:19086154-19086475(-)$1	321	244	281	46.6636
%%ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:65869730-65869961(+)$1	231	41	78	48.4824
[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^bbccc:	chr1:12644931-12645222(-)$1	291	194	231	43.8840
:eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eeeee:	chr3:15846222-15846471(-)$1	249	31	68	41.9121
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:143511823-143512061(+)$1	238	60	97	50.7655
c[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chr2:97437921-97438191(+)$1	270	20	57	44.0932
ffff^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chr7:112103847-112104129(+)$1	282	117	154	43.2126
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee:	chr10:35714985-35715303(+)$1	318	187	224	45.8837
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:11170-11374(+)$1	204	109	146	50.7655
ggggggg^^^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr22:50004081-50004304(-)$1	223	169	206	42.6539
d^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]f	chr5:10722084-10722403(-)$1	319	166	203	45.2588
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:119452910-119453145(-)$1	235	40	77	50.7655
gggggg^^^^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr9:115002449-115002738(-)$1	289	124	161	43.7042
c[eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr11:68156951-68157235(+)$1	284	167	204	44.2772
##dddd^^^^^^^^^^^^^^^^^^^^^^^^^^dddd4	chr1:29261693-29261944(+)$1	251	73	110	45.0281
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:169000496-169000790(+)$1	294	42	79	50.7655
!!dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr13:97981956-97982209(+)$1	253	147	184	48.1507
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:170167681-170167980(+)$1	299	160	197	50.7655
!!dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:29924825-29925148(+)$1	323	93	130	48.1507
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:11245-11453(+)$1	208	34	71	50.7655
::ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^cc	chr13:114561132-114561368(-)$1	236	193	230	45.8154
$$eeeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee>	chr9:135252008-135252307(-)$1	299	21	58	43.0791
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:163968441-163968705(+)$1	264	180	217	50.7655
ddd[ccc^^^^^^^^^^^^^^^^^^^^^^^^^cccdd	chr6:147658273-147658539(+)$1	266	50	87	42.9656
"""dddd^^^^^^^^^^^^^^^^^^^^^^^^dddd22	chr4:763608-763895(-)$1	287	78	115	42.4694
[ffffff^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr7:105898325-105898566(-)$1	241	14	51	42.1752
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:70059520-70059787(+)$1	267	51	88	50.7655
=====^^^^^^^^^^^^^^^^^^^^^^^^^^======	chr4:18011943-18012178(-)$1	235	137	174	44.2748
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr5:150487387-150487660(-)$1	273	110	147	50.7655
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeeee	chr15:84230621-84230905(+)$1	284	186	223	46.3889
ee!!ccc^^^^^^^^^^^^^^^^^^^^^^^^ccc333	chr16:72630725-72631053(-)$1	328	190	227	43.2452
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:63882091-63882386(-)$1	295	171	208	50.7655
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:100840067-100840364(-)$1	297	161	198	47.3466
cceeeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee:	chr7:11154242-11154585(+)$1	343	30	67	41.7119
eee[a^^^^^^^^^^^^^^^^^^^^^^^^^^aeeeee	chr7:44614161-44614497(-)$1	336	148	185	44.3567
f^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chr16:81737114-81737399(+)$1	285	92	129	45.0394
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:93244009-93244235(+)$1	226	76	113	50.7655
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr22:49857562-49857835(-)$1	273	134	171	45.3519
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:93784692-93784920(-)$1	228	62	99	50.7655
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:105064028-105064318(+)$1	290	214	251	50.7655
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr5:104533405-104533734(-)$1	329	265	302	44.8217
e[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr5:139582787-139583072(+)$1	285	78	115	45.4074
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:138011190-138011504(-)$1	314	76	113	50.7655
=======^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:124239081-124239419(+)$1	338	234	271	46.9651
!!ccc^^^^^^^^^^^^^^^^^^^^^^^ccc]dddd6	chr5:53238928-53239217(-)$1	289	130	167	40.1190
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]ee	chr1:27915061-27915309(-)$1	248	6	43	44.7223
$$$dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr5:145203860-145204123(-)$1	263	50	87	47.0398
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:11557380-11557691(-)$1	311	151	188	50.7655
ddd[ccc^^^^^^^^^^^^^^^^^^^^^^^^^cccdd	chr6:147658256-147658469(+)$1	213	67	104	42.9656
c[eeeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chr6:150102810-150103162(+)$1	352	146	183	42.5643
$$ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:49676225-49676473(+)$1	248	175	212	44.9609
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:15427234-15427488(-)$1	254	64	101	50.7655
""bb[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^b	chr8:8870142-8870438(+)$1	296	227	264	45.8765
""eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:3863932-3864313(-)$1	381	33	70	47.3818
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:27816026-27816274(+)$1	248	53	90	50.7655
iiiiiii^^^^^^^^^^^^^^^^^^^^^^^^^^^^ii	chr9:72354972-72355282(-)$1	310	132	169	44.7856
$$dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr2:145217595-145217898(-)$1	303	118	155	45.9458
iiiiiii^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:129336832-129337158(-)$1	326	203	240	46.2016
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr9:100270195-100270504(+)$1	309	259	296	45.9871
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:169451849-169452127(-)$1	278	12	49	50.7655
ggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:52346902-52347132(+)$1	230	19	56	48.1263
=======^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:125319139-125319433(+)$1	294	65	102	46.9651

#otherMatches

#Seq PSSM
CAGCUGAUCUUGUUAUACACACACACCACCCCAGCUG	chr2:178215029-178215267(-)$1	238	79	116	42.5711
ccugccacacucaccuucacaugcuucuuucaacacc	chrX:47515999-47516262(-)$1	263	118	155	46.3129
cacauguacccccggcacacaaacacaccccacauaa	chr7:138765844-138766084(-)$1	240	143	180	41.3596
GGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCCAAC	chrM:9744-9973(+)$1	229	93	130	44.7877
ugccuguacagacacacccacaauauacacacauagg	chr22:50004057-50004277(-)$1	220	142	179	42.6539
cacacguggauacacuugcauacacacacuacacaca	chr21:46899064-46899272(+)$1	208	168	205	41.5915
aagcaaccagccaagaagccaaaccaaaaccucugua	chr5:19086154-19086475(-)$1	321	244	281	46.6636
AAACcacacacacacaaacacacauacacacacacac	chr15:65869730-65869961(+)$1	231	41	78	48.4824
augcacacagacacacacccacagacacauacacuca	chr1:12644931-12645222(-)$1	291	194	231	43.8840
CUGCCUGUCUAUAAAAACCUUCCUUCCUUUGAGGCAC	chr3:15846222-15846471(-)$1	249	31	68	41.9121
UUUCUACAUUAUCAUCAUUUAUAUUUAUACUAGCACA	chr6:143511823-143512061(+)$1	238	60	97	50.7655
UAUGCUcacacacacacucauacccccacaaaggcac	chr2:97437921-97438191(+)$1	270	20	57	44.0932
CUCCAACUUAAUAAAUUACACAGGAUAACCAGGAGAA	chr7:112103847-112104129(+)$1	282	117	154	43.2126
acacacacaaacacacaaacacacacacacUGGCAUU	chr10:35714985-35715303(+)$1	318	187	224	45.8837
CUAAACAUUCUACUACUCACUCUCACUGCCCAAGAAC	chrM:11170-11374(+)$1	204	109	146	50.7655
ugccuguacagacacacccacaauauacacacauagg	chr22:50004081-50004304(-)$1	223	169	206	42.6539
acucauuauuaaccaccacaaguccaucccuugucaa	chr5:10722084-10722403(-)$1	319	166	203	45.2588
uucaaguccaauuacuccuuucaacuuugcauuauau	chr7:119452910-119453145(-)$1	235	40	77	50.7655
UAUAUCAAAACUCAUCACAUuguacauagauagauau	chr9:115002449-115002738(-)$1	289	124	161	43.7042
UACUGGCAUCUACCGACACUGAUAUUUACCAACGCCA	chr11:68156951-68157235(+)$1	284	167	204	44.2772
acgcuguuucuacacaaaaauacaaaaaaaguuagcc	chr1:29261693-29261944(+)$1	251	73	110	45.0281
UAUACACACAAUCACCCACACUAACUCCCCCGACACA	chr6:169000496-169000790(+)$1	294	42	79	50.7655
UUGACCACCACACACUCccuugccaaguuccuacuca	chr13:97981956-97982209(+)$1	253	147	184	48.1507
gcacauacacuacacacacacacacacacacacacag	chr6:170167681-170167980(+)$1	299	160	197	50.7655
AAUGGAAAGUACCUCcacacguccacagauacaccca	chr7:29924825-29925148(+)$1	323	93	130	48.1507
CUAAACAUUCUACUACUCACUCUCACUGCCCAAGAAC	chrM:11245-11453(+)$1	208	34	71	50.7655
CACCCUCUCACACACUUUUCUCUUUCUACAACUUUGG	chr13:114561132-114561368(-)$1	236	193	230	45.8154
uaagagagacccucccacacacacacaccuaucucua	chr9:135252008-135252307(-)$1	299	21	58	43.0791
uaaaaucacauucuuccuugcccuccccguaucacaa	chr6:163968441-163968705(+)$1	264	180	217	50.7655
cauagacacacacacacacacacacacaAGAAGUCAU	chr6:147658273-147658539(+)$1	266	50	87	42.9656
CAAGCUUCACUAUCAUAAAAUCAAAACAUUUAAGCAA	chr4:763608-763895(-)$1	287	78	115	42.4694
AUGUGGAAAGGAAAAAAGAAAUAGAAGAAAAGUCUGC	chr7:105898325-105898566(-)$1	241	14	51	42.1752
aguaauuuagccacuaccacauacauacauacauaua	chr2:70059520-70059787(+)$1	267	51	88	50.7655
uauauacacacacacacacagacacacacacauauau	chr4:18011943-18012178(-)$1	235	137	174	44.2748
uacacccccacaagacacuacaccuacacacacacca	chr5:150487387-150487660(-)$1	273	110	147	50.7655
cacacacacacacacacacacacacacUAUAGUGUCC	chr15:84230621-84230905(+)$1	284	186	223	46.3889
CCCUUGAUACUUACAAUGUAAAACUUUAUUUUCAUCU	chr16:72630725-72631053(-)$1	328	190	227	43.2452
uccauccauccauccauucauccauccauccaucuau	chr11:63882091-63882386(-)$1	295	171	208	50.7655
uacacacacacacacacacacacacacacacacacac	chr14:100840067-100840364(-)$1	297	161	198	47.3466
UCAACUCUUCAUAAACCUAAGUAGUCAUUUUGAGUUU	chr7:11154242-11154585(+)$1	343	30	67	41.7119
cguacguacauacauacauacacgcuaacuggacgug	chr7:44614161-44614497(-)$1	336	148	185	44.3567
cacacacacacagacacacacacacacaGACGCCUGU	chr16:81737114-81737399(+)$1	285	92	129	45.0394
UUUcacacacauucacacacacacgcacucuuucaca	chr7:93244009-93244235(+)$1	226	76	113	50.7655
agugcacacacacacacacacacagacacacacgcac	chr22:49857562-49857835(-)$1	273	134	171	45.3519
cacacacacacacacacacacacacacacacacacac	chr1:93784692-93784920(-)$1	228	62	99	50.7655
UCAGACCcacacacacacacacucacacucauacaca	chr12:105064028-105064318(+)$1	290	214	251	50.7655
CUAUUGACCUUUAUCUUUUUCUUAACAAAAUCUUCAG	chr5:104533405-104533734(-)$1	329	265	302	44.8217
ucuguauaccuuucaucccgauuuccccaaaccuuac	chr5:139582787-139583072(+)$1	285	78	115	45.4074
acacacacacacacacacacacacacacacaGAGUUU	chrX:138011190-138011504(-)$1	314	76	113	50.7655
AGAGCCUGCCCAAUUUAAAAaaaaaaucacugagaca	chr12:124239081-124239419(+)$1	338	234	271	46.9651
uuacauuuucuuucuggcaucaucacuuuguucuucu	chr5:53238928-53239217(-)$1	289	130	167	40.1190
UACACAGCCCCCCUACAAACACACACGUACAUGUUUG	chr1:27915061-27915309(-)$1	248	6	43	44.7223
aaaugaugaaccccuuucccugaaaaaUCCAUUAAUA	chr5:145203860-145204123(-)$1	263	50	87	47.0398
CCGUACACACACAUCCAUACACAUCCAUAUUCACACA	chr16:11557380-11557691(-)$1	311	151	188	50.7655
cauagacacacacacacacacacacacaAGAAGUCAU	chr6:147658256-147658469(+)$1	213	67	104	42.9656
uaugcaaucagucuucagaacacuuuucaucuugcaa	chr6:150102810-150103162(+)$1	352	146	183	42.5643
CCUGAGAAUGccaucugcucauucuucuauccaucca	chr19:49676225-49676473(+)$1	248	175	212	44.9609
Aacacacacacacacacacacacacacacacacacac	chr17:15427234-15427488(-)$1	254	64	101	50.7655
uuauauguuuaucucuuuccuuuucuuccauucucuc	chr8:8870142-8870438(+)$1	296	227	264	45.8765
cugucucaaacacacacacacacacacacacacacac	chr16:3863932-3864313(-)$1	381	33	70	47.3818
cucucucucAAacacacacacacacacacacacacac	chr6:27816026-27816274(+)$1	248	53	90	50.7655
GuauauaccuacauacauacauacacacacacaCCUA	chr9:72354972-72355282(-)$1	310	132	169	44.7856
AUGGUUUAAUCACUCUUCCCCAGUCCACAUCUCUAAC	chr2:145217595-145217898(-)$1	303	118	155	45.9458
UUACAUUUCUAUACAUCUAAUACAUAAUACCUUCUUA	chrX:129336832-129337158(-)$1	326	203	240	46.2016
uaacuuuuaacauuucuuucuuucuuuuuuuuuugag	chr9:100270195-100270504(+)$1	309	259	296	45.9871
UUUACCUCCUUGACAGCCUUAUAUCCUACUACAAACC	chr1:169451849-169452127(-)$1	278	12	49	50.7655
ucuauacacacacacacacacacacauauacacauac	chr15:52346902-52347132(+)$1	230	19	56	48.1263
UCAGAGCAAACUUUUAAUAUUUCUUCCAGACCAUUCA	chr6:125319139-125319433(+)$1	294	65	102	46.9651

#DB
((((((.........................))))))	chr2:178215029-178215267(-)$1	1	79	116	42.5711
...............................))))).	chrX:47515999-47516262(-)$1	1	118	155	46.3129
...((((........................))))..	chr7:138765844-138766084(-)$1	1	143	180	41.3596
(((............................))))).	chrM:9744-9973(+)$1	1	93	130	44.7877
(((((((.........................)))))	chr22:50004057-50004277(-)$1	1	142	179	42.6539
...(((((...........................))	chr21:46899064-46899272(+)$1	1	168	205	41.5915
..(((............................))).	chr5:19086154-19086475(-)$1	1	244	281	46.6636
..(((................................	chr15:65869730-65869961(+)$1	1	41	78	48.4824
.((............................))))).	chr1:12644931-12645222(-)$1	1	194	231	43.8840
.(((((.........................))))).	chr3:15846222-15846471(-)$1	1	31	68	41.9121
.....................................	chr6:143511823-143512061(+)$1	1	60	97	50.7655
(.((((..........................)))).	chr2:97437921-97438191(+)$1	1	20	57	44.0932
((((...........................))))))	chr7:112103847-112104129(+)$1	1	117	154	43.2126
...............................))))).	chr10:35714985-35715303(+)$1	1	187	224	45.8837
.....................................	chrM:11170-11374(+)$1	1	109	146	50.7655
(((((((.........................)))))	chr22:50004081-50004304(-)$1	1	169	206	42.6539
(..............................)))).)	chr5:10722084-10722403(-)$1	1	166	203	45.2588
.....................................	chr7:119452910-119453145(-)$1	1	40	77	50.7655
((((((..........................)))))	chr9:115002449-115002738(-)$1	1	124	161	43.7042
(.(((((..........................))))	chr11:68156951-68157235(+)$1	1	167	204	44.2772
..((((..........................)))).	chr1:29261693-29261944(+)$1	1	73	110	45.0281
.....................................	chr6:169000496-169000790(+)$1	1	42	79	50.7655
..((((...............................	chr13:97981956-97982209(+)$1	1	147	184	48.1507
.....................................	chr6:170167681-170167980(+)$1	1	160	197	50.7655
..((((...............................	chr7:29924825-29925148(+)$1	1	93	130	48.1507
.....................................	chrM:11245-11453(+)$1	1	34	71	50.7655
..(((..............................))	chr13:114561132-114561368(-)$1	1	193	230	45.8154
..(((((........................))))).	chr9:135252008-135252307(-)$1	1	21	58	43.0791
.....................................	chr6:163968441-163968705(+)$1	1	180	217	50.7655
(((.(((.........................)))))	chr6:147658273-147658539(+)$1	1	50	87	42.9656
...((((........................))))..	chr4:763608-763895(-)$1	1	78	115	42.4694
.((((((.........................)))))	chr7:105898325-105898566(-)$1	1	14	51	42.1752
.....................................	chr2:70059520-70059787(+)$1	1	51	88	50.7655
(((((..........................))))))	chr4:18011943-18012178(-)$1	1	137	174	44.2748
.....................................	chr5:150487387-150487660(-)$1	1	110	147	50.7655
...............................)))))(	chr15:84230621-84230905(+)$1	1	186	223	46.3889
((..(((........................)))...	chr16:72630725-72631053(-)$1	1	190	227	43.2452
.....................................	chr11:63882091-63882386(-)$1	1	171	208	50.7655
..(((((..............................	chr14:100840067-100840364(-)$1	1	161	198	47.3466
))(((((........................))))).	chr7:11154242-11154585(+)$1	1	30	67	41.7119
(((.(..........................))))))	chr7:44614161-44614497(-)$1	1	148	185	44.3567
(..............................))))))	chr16:81737114-81737399(+)$1	1	92	129	45.0394
.....................................	chr7:93244009-93244235(+)$1	1	76	113	50.7655
.((((............................))))	chr22:49857562-49857835(-)$1	1	134	171	45.3519
.....................................	chr1:93784692-93784920(-)$1	1	62	99	50.7655
.....................................	chr12:105064028-105064318(+)$1	1	214	251	50.7655
..(((((..........................))))	chr5:104533405-104533734(-)$1	1	265	302	44.8217
(.((((............................)))	chr5:139582787-139583072(+)$1	1	78	115	45.4074
.....................................	chrX:138011190-138011504(-)$1	1	76	113	50.7655
(((((((..............................	chr12:124239081-124239419(+)$1	1	234	271	46.9651
..(((.......................))).)))).	chr5:53238928-53239217(-)$1	1	130	167	40.1190
.(((...........................))).))	chr1:27915061-27915309(-)$1	1	6	43	44.7223
...((((..............................	chr5:145203860-145204123(-)$1	1	50	87	47.0398
.....................................	chr16:11557380-11557691(-)$1	1	151	188	50.7655
(((.(((.........................)))))	chr6:147658256-147658469(+)$1	1	67	104	42.9656
(.(((((........................))))).	chr6:150102810-150103162(+)$1	1	146	183	42.5643
..((((((.............................	chr19:49676225-49676473(+)$1	1	175	212	44.9609
.....................................	chr17:15427234-15427488(-)$1	1	64	101	50.7655
..((.((.............................)	chr8:8870142-8870438(+)$1	1	227	264	45.8765
..(((((..............................	chr16:3863932-3864313(-)$1	1	33	70	47.3818
.....................................	chr6:27816026-27816274(+)$1	1	53	90	50.7655
(((((((............................))	chr9:72354972-72355282(-)$1	1	132	169	44.7856
..((((............................)))	chr2:145217595-145217898(-)$1	1	118	155	45.9458
(((((((..............................	chrX:129336832-129337158(-)$1	1	203	240	46.2016
...............................))))))	chr9:100270195-100270504(+)$1	1	259	296	45.9871
.....................................	chr1:169451849-169452127(-)$1	1	12	49	50.7655
(((((................................	chr15:52346902-52347132(+)$1	1	19	56	48.1263
(((((((..............................	chr6:125319139-125319433(+)$1	1	65	102	46.9651

#PSSM
^ : 0.32	! : 0.08	g : 0.07	e : 0.05	[ : 0.05	c : 0.05	$ : 0.05	: : 0.04	d : 0.04	" : 0.04	= : 0.04	f : 0.02	i : 0.02	( : 0.01	% : 0.01	# : 0.01	
^ : 0.35	! : 0.08	g : 0.07	e : 0.05	[ : 0.05	$ : 0.05	d : 0.04	" : 0.04	= : 0.04	: : 0.02	f : 0.02	c : 0.02	i : 0.02	( : 0.01	% : 0.01	b : 0.01	# : 0.01	
^ : 0.35	e : 0.14	d : 0.13	g : 0.07	c : 0.07	f : 0.04	= : 0.04	b : 0.02	i : 0.02	( : 0.01	: : 0.01	" : 0.01	! : 0.01	$ : 0.01	
^ : 0.38	d : 0.14	e : 0.13	g : 0.07	c : 0.07	f : 0.04	[ : 0.04	= : 0.04	i : 0.02	! : 0.01	b : 0.01	
^ : 0.41	d : 0.14	e : 0.13	c : 0.10	g : 0.07	= : 0.04	f : 0.02	i : 0.02	a : 0.01	[ : 0.01	
^ : 0.52	d : 0.13	e : 0.13	g : 0.05	c : 0.04	f : 0.02	= : 0.02	i : 0.02	b : 0.01	
^ : 0.66	e : 0.11	d : 0.04	c : 0.04	g : 0.02	f : 0.02	= : 0.02	i : 0.02	b : 0.01	
^ : 0.97	e : 0.01	f : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.98	c : 0.01	
^ : 0.98	c : 0.01	
^ : 0.98	c : 0.01	
^ : 0.69	e : 0.11	d : 0.04	g : 0.02	f : 0.02	c : 0.02	b : 0.01	= : 0.01	a : 0.01	] : 0.01	
^ : 0.57	e : 0.13	d : 0.08	g : 0.07	c : 0.05	f : 0.04	b : 0.01	= : 0.01	
^ : 0.51	e : 0.16	d : 0.10	c : 0.08	g : 0.07	f : 0.04	= : 0.01	
^ : 0.48	e : 0.16	d : 0.13	g : 0.07	c : 0.05	f : 0.04	= : 0.01	3 : 0.01	] : 0.01	
^ : 0.44	e : 0.19	d : 0.11	g : 0.07	c : 0.04	f : 0.04	9 : 0.01	] : 0.01	2 : 0.01	= : 0.01	3 : 0.01	i : 0.01	
^ : 0.42	e : 0.08	g : 0.07	d : 0.07	: : 0.05	f : 0.05	] : 0.04	2 : 0.02	5 : 0.01	9 : 0.01	4 : 0.01	c : 0.01	> : 0.01	= : 0.01	3 : 0.01	6 : 0.01	b : 0.01	i : 0.01	

#score	3149.4700003823928
#seq	68
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_transcript_m1_run2.txt

#BEAR
!!dddd!!gggggggacccooooooccc]a]ggggggg]d	chr7:6071044-6071332(-)$1	288	65	105	14.2804
fff:eeeee"""gggggggnnnnnggggggg333eeeee:	chr19:57346351-57346663(-)$1	312	218	258	14.9469
)ccc####ggggggg[a[annnnna]a]ggggggg22ccc	chr1:212933755-212934127(-)$1	372	36	76	16.3638
[a[iiiiiiiiibb[ddddnnnnndddd]bb22iiiiiii	chr13:113869985-113870243(+)$1	258	208	248	17.0652
:============[a!!bbnnnnnbb]a]===========	chr19:57349530-57349779(-)$1	249	44	84	18.4955
b[ffffff[cccgggggggnnnnnggggggg333ccc22f	chr16:89381063-89381344(-)$1	281	196	236	15.9282
!!eeeee####dddd[cccnnnnncccddddeeeee]eee	chr15:25312067-25312318(+)$1	251	50	90	14.9608
c[ccc[ccc"""ccc[cccnnnnncccccc4444ccc]cc	chr19:34882998-34883237(+)$1	239	118	158	17.6140
e[iiiiiiiii%%%%%%bbnnnnnbb22iiiiiiiii]ee	chr19:34874022-34874271(+)$1	249	97	137	14.2348
ff"""bb####ccc!!cccnnnnnccc]cccbb333ffff	chr13:113866133-113866403(+)$1	270	76	116	16.2261
d"""eeeee"""gggggggnnnnnggggggg333eeeee4	chr19:57346321-57346551(-)$1	230	106	146	17.2577
!!a[eeeee"""bb!!cccnnnnnccc22bbeeeeea22c	chr11:65194413-65194692(+)$1	279	177	217	16.7775
f####ggggggg####cccmmmmccc4444ggggggg22f	chr19:34885257-34885520(+)$1	263	82	122	13.9109
!!ggggggg[a[affffffmmmmffffff]a]aggggggg	chr4:1236533-1236785(-)$1	252	14	54	11.6847
[bb[ccc####ccc[a[ddddllldddda]cccccc]bb]	chr7:104752939-104753209(-)$1	270	79	119	12.1312
========iiiiiiiii[annnnna]iiiiiiiii]====	chr15:25309306-25309580(+)$1	274	62	102	19.1985
ddccc[=============nnnnn=============22c	chr5:73935902-73936220(-)$1	318	150	190	18.9162
fffeeeee[eeeee[a[cccmmmmccc]a]eeeee333ee	chr5:282135-282411(+)$1	276	7	47	11.4729
hhhhhiiiiiiiii[ddddnnnnnddddiiiiiiiii::h	chr16:89520403-89520676(-)$1	273	57	97	14.6682
[ccc[bb[eeeee[bb[bbnnnnnbb333bb]eeeee]bb	chr8:453760-454015(-)$1	255	126	166	14.5557
b[ffffffggggggg[cccnnnnnccc]ggggggg]ffff	chr15:25313599-25313908(+)$1	309	77	117	16.5871
===####ggggggg!!eeeeellleeeee333ggggggg2	chr19:34883337-34883591(+)$1	254	141	181	13.6567
:a[iiiiiiiii[a[ddddnnnnndddda]iiiiiiiii]	chr12:11005667-11005964(-)$1	297	199	239	17.2821
!!hhhhhhhh$$$$$ddddnnnnndddd333hhhhhhhh3	chr7:155506576-155506848(+)$1	272	93	133	14.2104
ffffccc!!ddddffffffnnnnnffffff]dddd4444c	chr14:39835793-39836048(+)$1	255	61	101	12.5007
$$$bb[bb[a!!iiiiiiiiillliiiiiiiii]a]bb]b	chr18:55797436-55797717(+)$1	281	114	154	12.7564
[bb[===========####bblllbb4444==========	chr13:113870234-113870484(+)$1	250	198	238	15.1538
[=============!!cccnnnnnccc333==========	chr14:39736596-39736844(+)$1	248	202	242	21.4085
cccccffffffccc"""bbnnnnnbb4444ccc333ffff	chr20:57001418-57001757(+)$1	339	239	279	15.2551
:hhhhhhhh[iiiiiiiiinnnnniiiiiiiii]hhhhhh	chr13:113870066-113870358(+)$1	292	245	285	14.6224
==========[bb[a!!ammmma22a]bb]==========	chr2:148720747-148720997(-)$1	250	33	73	12.7549
c]bba[eeeeedddd[cccnnnnnccc]dddd22eeeee]	chr11:65194774-65194998(+)$1	224	28	68	13.9770
!!==========!!ddddoooooodddd22==========	chr3:187454542-187454771(-)$1	229	137	177	16.0626
fffdddd[ccc####cccooooooccc4444ccc]dddd:	chr12:132478857-132479167(+)$1	310	102	142	11.8734
""dddd[eeeee"""ddddnnnnnddddeeeeeddddddd	chr7:155507002-155507276(+)$1	274	179	219	13.3232
ee[bb[eeeee####ddddnnnnndddd4444eeeee]bb	chr9:139997585-139997821(+)$1	236	142	182	15.1574
""ccc[ccc"""bb!!ddddllldddd22bb]ccc]ccc]	chr6:159046985-159047259(+)$1	274	61	101	12.9882
cc[iiiiiiiii####eeeeellleeeeeiiiiiiiii]c	chr19:57351239-57351485(-)$1	246	177	217	14.3685
2ccceeeee"""gggggggnnnnnggggggg22eeeeeDD	chr3:171843914-171844184(+)$1	270	166	206	13.5513
gg####a!!ggggggg!!annnnna22ggggggg22aggg	chr6:45273552-45273801(-)$1	249	83	123	16.3096
[=============!!cccnnnnnccc333==========	chr14:39736644-39736916(+)$1	272	154	194	21.4085
[ccc!!aiiiiiiiii[bbmmmmbbiiiiiiiii]a4444	chr21:46281371-46281684(-)$1	313	183	223	13.3991
[ccc!!eeeee!!ccc[bbnnnnnbbccc22eeeee22cc	chr7:158289858-158290248(-)$1	390	215	255	15.4348
#iiiiiiiii[ccc[cccooooooccc]ccc22iiiiiii	chr5:1804050-1804342(+)$1	292	178	218	16.0058
dd:::ggggggggggggggnnnnnggggggg22ggggggg	chr19:16983634-16983871(+)$1	237	69	109	13.5959
!eeeee####ccc####cccmmmmccc333ccc]eeeee2	chr19:34873626-34873890(+)$1	264	66	106	13.0727
===!!a[ccc!!gggggggnnnnnggggggg333ccc]a3	chr21:47564148-47564434(-)$1	286	147	187	17.9691
"ffffff[a[a[gggggggnnnnnggggggg]a]a]ffff	chr13:113869393-113869715(+)$1	322	35	75	16.2653
=======[eeeee[bbcccnnnnnccc]bb22eeeee22=	chr6:168333345-168333597(+)$1	252	104	144	15.9686

#otherMatches

#Seq PSSM
CAGCCUGACUUUUUUCCAGAAGUGACUGAGCAGAAAAGAG	chr7:6071044-6071332(-)$1	288	65	105	14.2804
UUUGAGAGGUGUUGAGGAGGGAGACUCCUCACUUUCUCUG	chr19:57346351-57346663(-)$1	312	218	258	14.9469
ugacagcaaugggaugggcaggcaggugguuucaugaguc	chr1:212933755-212934127(-)$1	372	36	76	16.3638
GGAGGUCGCGUGUGUGACUAUGGAGGUCUCGUCCAUGUGG	chr13:113869985-113870243(+)$1	258	208	248	17.0652
ACAGGGUGGCGCCCGAGGUUGAUUGCGCAGGCGCCAUCUU	chr19:57349530-57349779(-)$1	249	44	84	18.4955
UGUUCUCUGUGCCUGGUCUGAUGAAGAUCAGUAAGCAGUG	chr16:89381063-89381344(-)$1	281	196	236	15.9282
CUAGGUCAAAAUUCGCAUCCUACUGAUUGAAGGCCUUGGG	chr15:25312067-25312318(+)$1	251	50	90	14.9608
UGAGGAUCUGAGUCUGUCAAUAUCUGAAGAGGUAGGAAUC	chr19:34882998-34883237(+)$1	239	118	158	17.6140
CAGUUUUGGCUGGAGAGGCCUGAAGCAGAGCCAGAGCAGG	chr19:34874022-34874271(+)$1	249	97	137	14.2348
agcuccgguuccacuccgccaccagcgugugcgucucucc	chr13:113866133-113866403(+)$1	270	76	116	16.2261
UUUGAGAGGUGUUGAGGAGGGAGACUCCUCACUUUCUCUG	chr19:57346321-57346551(-)$1	230	106	146	17.2577
AUCUGGAGGAUACAUCUUGGCUUGCAAACUGCCUCUGUCU	chr11:65194413-65194692(+)$1	279	177	217	16.7775
UGUUAGUAUCUGGGGAGGAAGGAUCUGGUACAGGUAUGAG	chr19:34885257-34885520(+)$1	263	82	122	13.9109
AGUAUCGGUUGGCGUUGAUGAGUAUCGGCUGGCAUUGAUG	chr4:1236533-1236785(-)$1	252	14	54	11.6847
GUUGUACAAGGUGCGGUCCUGGAGCAGGUGGUGGUGGAGG	chr7:104752939-104753209(-)$1	270	79	119	12.1312
CCUAUUGAUUGAAGGCUGGGGUCUUGAGUCUUUGGUUUAG	chr15:25309306-25309580(+)$1	274	62	102	19.1985
GCUGCAGGGGUGUGUUCGCGAGGGGUGAGCGUGCUCCGAG	chr5:73935902-73936220(-)$1	318	150	190	18.9162
cuggagauacagauaggagcugauguuguaguuugagGGU	chr5:282135-282411(+)$1	276	7	47	11.4729
GCAGUGACUGAGAGCAGCUCUUCAGGCUCUCUUGGUUGUG	chr16:89520403-89520676(-)$1	273	57	97	14.6682
UUGUGUGGCUCUGGAUUCCGUGUUGGUGUGUGCAGAGGUG	chr8:453760-454015(-)$1	255	126	166	14.5557
AUGGAUUUCUCUGGUGGAUGACAGGUCAGCCAGGGCGGGU	chr15:25313599-25313908(+)$1	309	77	117	16.5871
UCUGUCAGUAUCUGAGGAGGUAGGAUCUCAUACAGGUAUG	chr19:34883337-34883591(+)$1	254	141	181	13.6567
augccggggucuugauuaguuuaucuggcuaggcucuggg	chr12:11005667-11005964(-)$1	297	199	239	17.2821
aguuuccucgguggguagcagggagcuagaguggggaggu	chr7:155506576-155506848(+)$1	272	93	133	14.2104
guccucagucuguccugugguaugcaugggugcaguuugu	chr14:39835793-39836048(+)$1	255	61	101	12.5007
GGAACUGUGGUGUCGGGCUCUGUUGGGGUUUGGUUGACUG	chr18:55797436-55797717(+)$1	281	114	154	12.7564
GACUAUGGAGGUCUCAUCUGUGUGGCUGUGGAGGUCUUUG	chr13:113870234-113870484(+)$1	250	198	238	15.1538
CGGCUUUGGGGUCUAAGCCGCCGUGGUCAGAGGUCCCGAA	chr14:39736596-39736844(+)$1	248	202	242	21.4085
CCAAGAAGGGCCAGAUUGUGAAAAGCUGAACUGAUUGCCU	chr20:57001418-57001757(+)$1	339	239	279	15.2551
CCCAUGGUCCCAUGUGGCUGUGGAGGUCGUGUGUGACUAU	chr13:113870066-113870358(+)$1	292	245	285	14.6224
uucucaggccugugacacugcugcuuggcuggccugggaa	chr2:148720747-148720997(-)$1	250	33	73	12.7549
CACCUGGGCCUGUUUGCCUGAGAAGGGGAGAUAAGGGCUG	chr11:65194774-65194998(+)$1	224	28	68	13.9770
AACCAAAUGCUGGUGGUGCUUCCACACCUGCGGCAUUUGG	chr3:187454542-187454771(-)$1	229	137	177	16.0626
GUUCAGGGCUGGAGGGCUGAAGAGAGCGGAGUGGGCUUGG	chr12:132478857-132479167(+)$1	310	102	142	11.8734
GUGUUUAUUCAGACUGGAGCUGAACUCCCUGAGAAAUGAG	chr7:155507002-155507276(+)$1	274	179	219	13.3232
CAGGCGUGCAGGUCGGUGGUACAUUCAUGCUGUUGCAGGC	chr9:139997585-139997821(+)$1	236	142	182	15.1574
UGCCACCUGCUAUGUGUGCAGCGUGCAGUCACCAGCUGGA	chr6:159046985-159047259(+)$1	274	61	101	12.9882
AUAAGGGCGGCUGAGGCUUGCUGCGCAGGAGCUGCCUUGG	chr19:57351239-57351485(-)$1	246	177	217	14.3685
UGUCACAUUUUUCCUUUGCUCUCUGUAGAGGCUAGUGUCA	chr3:171843914-171844184(+)$1	270	166	206	13.5513
GAAUUAGAGAGGCUCCUAGGUAGACGUGGGGCCUAGCUCU	chr6:45273552-45273801(-)$1	249	83	123	16.3096
CGGCUUUGGGGUCUAAGCCGCCGUGGUCAGAGGUCCCGAA	chr14:39736644-39736916(+)$1	272	154	194	21.4085
AGGUGGGGUUGGCAGCACUCAGGAGGCUGCCAACACAGAG	chr21:46281371-46281684(-)$1	313	183	223	13.3991
GAGCAACACCCACCCCUACGUGCAGUGGGCAGGGUGGGGC	chr7:158289858-158290248(-)$1	390	215	255	15.4348
UCCUUGCUUUGUGGGUGUUAUGGCACGGUCGUGGGGGCAA	chr5:1804050-1804342(+)$1	292	178	218	16.0058
CGAUUCCGUCCACCUGUCUCCUGAGGACAGGCAUGGGCGG	chr19:16983634-16983871(+)$1	237	69	109	13.5959
AGGCCUAGGAAUGAUAGCUGGACACAGGAACAUGGGGCCA	chr19:34873626-34873890(+)$1	264	66	106	13.0727
aggggagagagguguaggggccagcccuacagggucugug	chr21:47564148-47564434(-)$1	286	147	187	17.9691
UGUGACCAUGGAAGUCGCGUUCCGUGUGGCUGUGGAGGUC	chr13:113869393-113869715(+)$1	322	35	75	16.2653
UUCAGGGGGCAGUUGCCGGUGUUCUCGUGCUCACUGUGGU	chr6:168333345-168333597(+)$1	252	104	144	15.9686

#DB
..((((..(((((((((((......))).).))))))).)	chr7:6071044-6071332(-)$1	1	65	105	14.2804
))).(((((...(((((((.....)))))))...))))).	chr19:57346351-57346663(-)$1	1	218	258	14.9469
.(((....(((((((.(.(.....).).)))))))..)))	chr1:212933755-212934127(-)$1	1	36	76	16.3638
.(.(((((((((((.((((.....)))).))..)))))))	chr13:113869985-113870243(+)$1	1	208	248	17.0652
.((((((((((((.(..((.....)).).)))))))))))	chr19:57349530-57349779(-)$1	1	44	84	18.4955
(.((((((.((((((((((.....)))))))...)))..)	chr16:89381063-89381344(-)$1	1	196	236	15.9282
..(((((....((((.(((.....)))))))))))).)))	chr15:25312067-25312318(+)$1	1	50	90	14.9608
(.(((.(((...(((.(((.....))))))....))).))	chr19:34882998-34883237(+)$1	1	118	158	17.6140
(.(((((((((......((.....))..))))))))).))	chr19:34874022-34874271(+)$1	1	97	137	14.2348
((...((....(((..(((.....))).)))))...))))	chr13:113866133-113866403(+)$1	1	76	116	16.2261
(...(((((...(((((((.....)))))))...))))).	chr19:57346321-57346551(-)$1	1	106	146	17.2577
..(.(((((...((..(((.....)))..))))))))..)	chr11:65194413-65194692(+)$1	1	177	217	16.7775
(....(((((((....(((....)))....)))))))..)	chr19:34885257-34885520(+)$1	1	82	122	13.9109
..(((((((.(.(((((((....)))))).).))))))))	chr4:1236533-1236785(-)$1	1	14	54	11.6847
.((.(((....(((.(.((((...))))).)))))).)).	chr7:104752939-104753209(-)$1	1	79	119	12.1312
(((((((((((((((((.(.....).))))))))).))))	chr15:25309306-25309580(+)$1	1	62	102	19.1985
))(((.(((((((((((((.....)))))))))))))..)	chr5:73935902-73936220(-)$1	1	150	190	18.9162
((((((((.(((((.(.(((....))).).)))))...))	chr5:282135-282411(+)$1	1	7	47	11.4729
)))))(((((((((.((((.....)))))))))))))..(	chr16:89520403-89520676(-)$1	1	57	97	14.6682
.(((.((.(((((.((.((.....))...)).))))).))	chr8:453760-454015(-)$1	1	126	166	14.5557
(.(((((((((((((.(((.....))).))))))).))))	chr15:25313599-25313908(+)$1	1	77	117	16.5871
(((....(((((((..(((((...)))))...))))))).	chr19:34883337-34883591(+)$1	1	141	181	13.6567
.(.(((((((((.(.((((.....))))).))))))))).	chr12:11005667-11005964(-)$1	1	199	239	17.2821
..((((((((.....((((.....))))...)))))))).	chr7:155506576-155506848(+)$1	1	93	133	14.2104
(((((((..((((((((((.....)))))).))))....)	chr14:39835793-39836048(+)$1	1	61	101	12.5007
...((.((.(..(((((((((...))))))))).).)).)	chr18:55797436-55797717(+)$1	1	114	154	12.7564
.((.(((((((((((....((...))....))))))))))	chr13:113870234-113870484(+)$1	1	198	238	15.1538
.(((((((((((((..(((.....)))...))))))))))	chr14:39736596-39736844(+)$1	1	202	242	21.4085
((((((((((((((...((.....))....)))...))))	chr20:57001418-57001757(+)$1	1	239	279	15.2551
.((((((((.(((((((((.....))))))))).))))))	chr13:113870066-113870358(+)$1	1	245	285	14.6224
((((((((((.((.(..(....)..).)).))))))))))	chr2:148720747-148720997(-)$1	1	33	73	12.7549
).))(.(((((((((.(((.....))).))))..))))).	chr11:65194774-65194998(+)$1	1	28	68	13.9770
..((((((((((..((((......))))..))))))))))	chr3:187454542-187454771(-)$1	1	137	177	16.0626
)))((((.(((....(((......)))....))).)))).	chr12:132478857-132479167(+)$1	1	102	142	11.8734
..((((.(((((...((((.....))))))))))))))))	chr7:155507002-155507276(+)$1	1	179	219	13.3232
((.((.(((((....((((.....))))....))))).))	chr9:139997585-139997821(+)$1	1	142	182	15.1574
..(((.(((...((..((((...))))..)).))).))).	chr6:159046985-159047259(+)$1	1	61	101	12.9882
((.(((((((((....(((((...)))))))))))))).)	chr19:57351239-57351485(-)$1	1	177	217	14.3685
.)))(((((...(((((((.....)))))))..)))))))	chr3:171843914-171844184(+)$1	1	166	206	13.5513
((....(..(((((((..(.....)..)))))))..))))	chr6:45273552-45273801(-)$1	1	83	123	16.3096
.(((((((((((((..(((.....)))...))))))))))	chr14:39736644-39736916(+)$1	1	154	194	21.4085
.(((..((((((((((.((....))))))))))).)....	chr21:46281371-46281684(-)$1	1	183	223	13.3991
.(((..(((((..(((.((.....)))))..)))))..))	chr7:158289858-158290248(-)$1	1	215	255	15.4348
.(((((((((.(((.(((......))).)))..)))))))	chr5:1804050-1804342(+)$1	1	178	218	16.0058
))...((((((((((((((.....)))))))..)))))))	chr19:16983634-16983871(+)$1	1	69	109	13.5959
.(((((....(((....(((....)))...))).))))).	chr19:34873626-34873890(+)$1	1	66	106	13.0727
(((..(.(((..(((((((.....)))))))...))).).	chr21:47564148-47564434(-)$1	1	147	187	17.9691
.((((((.(.(.(((((((.....))))))).).).))))	chr13:113869393-113869715(+)$1	1	35	75	16.2653
(((((((.(((((.(((((.....))).))..)))))..)	chr6:168333345-168333597(+)$1	1	104	144	15.9686

#PSSM
[ : 0.16	! : 0.14	f : 0.12	= : 0.10	c : 0.08	: : 0.06	d : 0.06	" : 0.06	b : 0.04	e : 0.04	) : 0.02	h : 0.02	$ : 0.02	2 : 0.02	g : 0.02	# : 0.02	
= : 0.16	c : 0.14	! : 0.12	f : 0.12	[ : 0.08	" : 0.06	a : 0.04	b : 0.04	d : 0.04	h : 0.04	e : 0.04	# : 0.02	$ : 0.02	] : 0.02	g : 0.02	i : 0.02	
c : 0.18	= : 0.18	f : 0.14	[ : 0.08	b : 0.06	h : 0.06	d : 0.04	e : 0.04	i : 0.04	" : 0.04	# : 0.04	a : 0.02	g : 0.02	$ : 0.02	: : 0.02	
c : 0.18	= : 0.14	i : 0.10	f : 0.08	d : 0.06	e : 0.06	[ : 0.06	# : 0.06	h : 0.06	b : 0.06	: : 0.04	" : 0.04	g : 0.02	! : 0.02	
= : 0.16	e : 0.14	c : 0.12	i : 0.10	# : 0.08	d : 0.06	f : 0.06	h : 0.06	! : 0.06	b : 0.04	" : 0.02	g : 0.02	[ : 0.02	a : 0.02	: : 0.02	
= : 0.16	e : 0.14	i : 0.12	[ : 0.12	f : 0.08	d : 0.06	# : 0.06	g : 0.06	b : 0.04	c : 0.04	h : 0.04	! : 0.04	a : 0.02	
e : 0.18	= : 0.18	i : 0.12	f : 0.08	c : 0.08	# : 0.06	b : 0.06	g : 0.06	h : 0.04	[ : 0.04	a : 0.04	! : 0.02	d : 0.02	
e : 0.18	= : 0.16	i : 0.14	# : 0.10	g : 0.08	[ : 0.08	! : 0.06	f : 0.06	c : 0.06	h : 0.04	b : 0.02	
e : 0.20	i : 0.16	g : 0.14	= : 0.14	# : 0.08	c : 0.08	[ : 0.06	h : 0.04	! : 0.04	f : 0.02	a : 0.02	
i : 0.16	g : 0.14	= : 0.14	e : 0.14	" : 0.12	# : 0.08	c : 0.06	[ : 0.06	h : 0.02	d : 0.02	a : 0.02	f : 0.02	
i : 0.16	g : 0.14	e : 0.14	" : 0.12	= : 0.12	c : 0.06	# : 0.06	a : 0.04	! : 0.04	[ : 0.04	$ : 0.02	d : 0.02	f : 0.02	
g : 0.14	i : 0.14	" : 0.12	= : 0.12	c : 0.12	e : 0.08	d : 0.06	! : 0.06	[ : 0.04	# : 0.04	% : 0.02	$ : 0.02	b : 0.02	
g : 0.24	c : 0.12	= : 0.10	i : 0.10	b : 0.08	# : 0.08	d : 0.06	e : 0.06	! : 0.04	% : 0.02	a : 0.02	[ : 0.02	$ : 0.02	" : 0.02	
g : 0.24	c : 0.12	# : 0.10	i : 0.10	[ : 0.08	= : 0.08	b : 0.06	d : 0.04	f : 0.04	% : 0.02	e : 0.02	a : 0.02	$ : 0.02	! : 0.02	" : 0.02	
g : 0.22	[ : 0.12	! : 0.12	# : 0.10	i : 0.08	d : 0.06	a : 0.04	c : 0.04	f : 0.04	= : 0.04	b : 0.04	" : 0.04	% : 0.02	$ : 0.02	
g : 0.16	! : 0.16	d : 0.14	[ : 0.10	# : 0.08	i : 0.08	a : 0.06	c : 0.06	f : 0.04	b : 0.04	% : 0.02	= : 0.02	" : 0.02	
c : 0.26	d : 0.16	g : 0.14	[ : 0.10	! : 0.06	i : 0.06	f : 0.04	e : 0.04	# : 0.04	a : 0.02	% : 0.02	= : 0.02	" : 0.02	
c : 0.30	d : 0.18	g : 0.14	b : 0.12	[ : 0.04	f : 0.04	e : 0.04	i : 0.04	= : 0.02	# : 0.02	a : 0.02	! : 0.02	
c : 0.26	d : 0.16	g : 0.14	b : 0.12	a : 0.06	o : 0.06	f : 0.04	e : 0.04	i : 0.04	= : 0.02	# : 0.02	m : 0.02	
n : 0.67	o : 0.08	m : 0.08	d : 0.04	c : 0.04	e : 0.04	i : 0.02	b : 0.02	
n : 0.67	m : 0.12	o : 0.08	e : 0.04	d : 0.02	i : 0.02	b : 0.02	l : 0.02	
n : 0.67	m : 0.12	l : 0.12	o : 0.08	
n : 0.67	l : 0.12	m : 0.10	o : 0.08	a : 0.02	
n : 0.67	l : 0.10	o : 0.08	m : 0.04	c : 0.02	f : 0.02	2 : 0.02	d : 0.02	b : 0.02	
c : 0.28	d : 0.18	g : 0.14	b : 0.14	a : 0.06	f : 0.04	e : 0.04	i : 0.04	o : 0.02	= : 0.02	2 : 0.02	
c : 0.30	d : 0.18	g : 0.14	b : 0.12	i : 0.06	] : 0.04	f : 0.04	e : 0.04	= : 0.02	a : 0.02	2 : 0.02	
c : 0.30	d : 0.18	g : 0.14	i : 0.08	4 : 0.06	] : 0.04	2 : 0.04	f : 0.04	e : 0.04	a : 0.02	= : 0.02	3 : 0.02	
d : 0.18	g : 0.16	] : 0.14	4 : 0.08	i : 0.08	3 : 0.08	c : 0.06	2 : 0.06	f : 0.04	e : 0.04	a : 0.02	= : 0.02	b : 0.02	
g : 0.20	i : 0.12	4 : 0.10	3 : 0.10	c : 0.08	] : 0.06	2 : 0.06	a : 0.06	e : 0.06	d : 0.04	f : 0.04	b : 0.04	= : 0.02	
g : 0.20	i : 0.14	b : 0.10	4 : 0.10	] : 0.10	3 : 0.10	c : 0.06	= : 0.04	d : 0.04	2 : 0.04	a : 0.02	f : 0.02	e : 0.02	
g : 0.22	i : 0.16	= : 0.14	c : 0.10	b : 0.08	4 : 0.06	] : 0.04	d : 0.04	e : 0.04	3 : 0.04	2 : 0.04	a : 0.02	
i : 0.16	= : 0.14	g : 0.10	3 : 0.10	2 : 0.10	e : 0.10	] : 0.08	c : 0.08	4 : 0.04	d : 0.04	b : 0.02	h : 0.02	
e : 0.16	i : 0.16	= : 0.14	g : 0.12	2 : 0.10	c : 0.10	3 : 0.08	a : 0.04	4 : 0.02	b : 0.02	h : 0.02	d : 0.02	
g : 0.16	i : 0.16	e : 0.16	= : 0.14	3 : 0.12	] : 0.08	c : 0.06	d : 0.04	4 : 0.02	h : 0.02	2 : 0.02	
e : 0.24	g : 0.14	i : 0.14	= : 0.14	c : 0.10	3 : 0.04	h : 0.04	d : 0.04	a : 0.04	] : 0.04	2 : 0.02	
e : 0.22	= : 0.14	i : 0.12	g : 0.10	] : 0.10	c : 0.08	3 : 0.06	2 : 0.04	h : 0.04	d : 0.04	4 : 0.02	a : 0.02	
e : 0.16	= : 0.16	i : 0.12	g : 0.10	c : 0.08	f : 0.08	2 : 0.04	] : 0.04	a : 0.04	h : 0.04	4 : 0.04	d : 0.04	3 : 0.02	b : 0.02	
= : 0.14	e : 0.12	2 : 0.12	g : 0.10	] : 0.10	i : 0.08	f : 0.08	c : 0.04	b : 0.04	h : 0.04	4 : 0.04	d : 0.04	3 : 0.02	: : 0.02	
e : 0.14	= : 0.14	2 : 0.10	c : 0.08	f : 0.08	g : 0.08	] : 0.06	i : 0.06	b : 0.06	h : 0.04	4 : 0.04	d : 0.04	: : 0.02	D : 0.02	a : 0.02	
= : 0.16	c : 0.14	f : 0.12	] : 0.08	e : 0.06	g : 0.06	b : 0.06	d : 0.04	: : 0.04	i : 0.04	4 : 0.04	h : 0.04	2 : 0.04	3 : 0.04	D : 0.02	

#score	747.6109334344761
#seq	49
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_CDS_m3_run1.txt

#BEAR
ee[ddddnnnnndddde	chr17:37899048-37899310(+)$1	262	226	243	8.9512
ffff[bbnnnnnbbfff	chr6:167365916-167366141(-)$1	225	164	181	9.1817
fff!!bbnnnnnbb22f	chr2:101437409-101437658(+)$1	249	57	74	8.7551
=======nnnnn=====	chr3:42661364-42661641(+)$1	277	14	31	9.0188
cc[ddddnnnnndddd]	chr22:45723787-45724047(+)$1	260	135	152	8.6291
eeeeebbnnnnnbb]ee	chr20:401383-401625(+)$1	242	145	162	10.0808
:ffffffnnnnnfffff	chr6:41748002-41748313(+)$1	311	167	184	7.7440
eeee[ccclllccceee	chr15:80215296-80215599(-)$1	303	35	52	6.2793
[eeeeeooooooeeeee	chr12:111168338-111168635(-)$1	297	134	151	8.1752
[eeeeeooooooeeeee	chr13:113863706-113864078(+)$1	372	347	364	8.1752
ccc[cccnnnnnccc]c	chr17:28444214-28444485(+)$1	271	179	196	8.7085
!!bb!!annnnna22bb	chr5:139493782-139494104(+)$1	322	178	195	7.4534
eee[cccnnnnncccee	chr7:100172738-100172979(-)$1	241	68	85	9.6705
:eeeeeooooooeeeee	chr22:42298876-42299110(+)$1	234	126	143	7.3501
eeee[bbnnnnnbbeee	chr12:62996647-62996983(+)$1	336	98	115	10.3652
c####bbnnnnnbbccc	chr13:111315268-111315519(-)$1	251	99	116	8.6401
:ffffffnnnnnfffff	chr14:24901494-24901759(+)$1	265	36	53	7.7440
fff[a[annnnna]a]f	chr2:220043013-220043409(+)$1	396	32	49	8.8248
!!eeeeennnnneeeee	chr3:49050612-49050868(+)$1	256	169	186	9.9461
:a[a[bbnnnnnbb]a]	chr13:113760895-113761294(+)$1	399	22	39	8.5649
eee[cccnnnnncccee	chr7:100172779-100173061(-)$1	282	150	167	9.6705
!eeeeeooooooeeeee	chr6:111136129-111136401(-)$1	272	236	253	8.1946
!ffffffnnnnnfffff	chr3:48664362-48664659(-)$1	297	28	45	8.5886
fffff[annnnna]fff	chr6:5000732-5000990(-)$1	258	28	45	8.7384
:eeeeeooooooeeeee	chr6:91254232-91254531(-)$1	299	51	68	7.3501
[a[ddddnnnnndddd]	chr14:103574564-103574856(+)$1	292	71	88	8.7193
cccddddnnnnndddd]	chr18:55990355-55990566(+)$1	211	9	26	8.4718
eeee[bbnnnnnbbeee	chr22:20074077-20074344(+)$1	267	140	157	10.3652
eeee[aooooooaeeee	chr2:219267724-219267949(+)$1	225	205	222	8.2602
e!!ddddnnnnndddd2	chr12:58217991-58218476(-)$1	485	340	357	8.2823
dddd[bbnnnnnbbddd	chr9:139904664-139905000(-)$1	336	234	251	8.8363
cc"""bbnnnnnbbccc	chr19:46522367-46522729(+)$1	362	149	166	8.8494
ccc[cccooooooccc]	chr16:28878114-28878410(+)$1	296	92	109	6.4320
:eeeeeooooooeeeee	chr1:155033707-155034063(+)$1	356	79	96	7.3501
ffff[bbnnnnnbb]ff	chr12:62996868-62997164(+)$1	296	269	286	9.2532
dddd[bbnnnnnbb]dd	chr5:1065479-1065751(-)$1	272	253	270	8.8869
[eeeeeooooooeeeee	chr6:128327053-128327395(-)$1	342	69	86	8.1752
!eeeeeooooooeeeee	chr7:150066650-150066963(+)$1	313	71	88	8.1946
ggeeeeennnnneeeee	chr2:219266989-219267248(+)$1	259	27	44	9.7719
:eeeeeooooooeeeee	chr7:150935307-150935575(+)$1	268	9	26	7.3501

#otherMatches

#Seq PSSM
GGCUGGUGGAGUGCCAC	chr17:37899048-37899310(+)$1	262	226	243	8.9512
AGGUGAGUGUUUCUGCC	chr6:167365916-167366141(-)$1	225	164	181	9.1817
ACUCCGGAGCUCCCCAG	chr2:101437409-101437658(+)$1	249	57	74	8.7551
uaauuGACAAGAUUAAU	chr3:42661364-42661641(+)$1	277	14	31	9.0188
GGACUUGAAGGACAAGA	chr22:45723787-45724047(+)$1	260	135	152	8.6291
GCAGGAGGGGAACUACC	chr20:401383-401625(+)$1	242	145	162	10.0808
AUUCAGCGAAUGGUUGA	chr6:41748002-41748313(+)$1	311	167	184	7.7440
UUCUUGCUGGCGGCGGG	chr15:80215296-80215599(-)$1	303	35	52	6.2793
AAAGCAACUACCUGUUU	chr12:111168338-111168635(-)$1	297	134	151	8.1752
gcggcUCCAAGAAGCUG	chr13:113863706-113864078(+)$1	372	347	364	8.1752
CAAAUACUGUACGUACU	chr17:28444214-28444485(+)$1	271	179	196	8.7085
GGUGGACAUCCAGAACA	chr5:139493782-139494104(+)$1	322	178	195	7.4534
CCUCGGAUCUCCUCCAG	chr7:100172738-100172979(-)$1	241	68	85	9.6705
ACUGUCGCUACGGACAG	chr22:42298876-42299110(+)$1	234	126	143	7.3501
UUUUCGCCUCCUGUAGA	chr12:62996647-62996983(+)$1	336	98	115	10.3652
GUUUUGCUGUUUGCCCU	chr13:111315268-111315519(-)$1	251	99	116	8.6401
CGAGGGUGCCCAGCCCU	chr14:24901494-24901759(+)$1	265	36	53	7.7440
Cgggcucgggcggcggc	chr2:220043013-220043409(+)$1	396	32	49	8.8248
AAGGCAGAAGUCCUGUC	chr3:49050612-49050868(+)$1	256	169	186	9.9461
gggugcagaggaugggg	chr13:113760895-113761294(+)$1	399	22	39	8.5649
CCUCGGAUCUCCUCCAG	chr7:100172779-100173061(-)$1	282	150	167	9.6705
GCCCGCGACCUGGCGGG	chr6:111136129-111136401(-)$1	272	236	253	8.1946
CUAUGUGACUCCCGCAU	chr3:48664362-48664659(-)$1	297	28	45	8.5886
UGACCCGGAAGACUGGU	chr6:5000732-5000990(-)$1	258	28	45	8.7384
GCAUGCCAUUCUGCAUG	chr6:91254232-91254531(-)$1	299	51	68	7.3501
CGGGAGGGCUGACCUCG	chr14:103574564-103574856(+)$1	292	71	88	8.7193
GCCCUGCGUGCUGUGGU	chr18:55990355-55990566(+)$1	211	9	26	8.4718
GCCCCUCCUCUAGAGGG	chr22:20074077-20074344(+)$1	267	140	157	10.3652
AGGAUGACCCACCUCCU	chr2:219267724-219267949(+)$1	225	205	222	8.2602
GAUGCCUCCAACAGGCU	chr12:58217991-58218476(-)$1	485	340	357	8.2823
GUGCGUCCUGGCGAGUG	chr9:139904664-139905000(-)$1	336	234	251	8.8363
CCAAUUCUGGAUGAGGU	chr19:46522367-46522729(+)$1	362	149	166	8.8494
CCCAGCCGGAGUGGGCC	chr16:28878114-28878410(+)$1	296	92	109	6.4320
UGGGCCCCUGCUGGCCC	chr1:155033707-155034063(+)$1	356	79	96	7.3501
GAGGCGACGCGCUCCCC	chr12:62996868-62997164(+)$1	296	269	286	9.2532
GUCGGCCGGCCUGGGCG	chr5:1065479-1065751(-)$1	272	253	270	8.8869
CAUGAauuuuauuuuau	chr6:128327053-128327395(-)$1	342	69	86	8.1752
UCAGAGCCUCACUUCUG	chr7:150066650-150066963(+)$1	313	71	88	8.1946
GACCCCAUGCCCUGGGG	chr2:219266989-219267248(+)$1	259	27	44	9.7719
CCAGGAGUUCAAUCCUG	chr7:150935307-150935575(+)$1	268	9	26	7.3501

#DB
((.((((.....)))))	chr17:37899048-37899310(+)$1	1	226	243	8.9512
((((.((.....)))))	chr6:167365916-167366141(-)$1	1	164	181	9.1817
(((..((.....))..)	chr2:101437409-101437658(+)$1	1	57	74	8.7551
(((((((.....)))))	chr3:42661364-42661641(+)$1	1	14	31	9.0188
((.((((.....)))).	chr22:45723787-45724047(+)$1	1	135	152	8.6291
(((((((.....)).))	chr20:401383-401625(+)$1	1	145	162	10.0808
.((((((.....)))))	chr6:41748002-41748313(+)$1	1	167	184	7.7440
((((.(((...))))))	chr15:80215296-80215599(-)$1	1	35	52	6.2793
.(((((......)))))	chr12:111168338-111168635(-)$1	1	134	151	8.1752
.(((((......)))))	chr13:113863706-113864078(+)$1	1	347	364	8.1752
(((.(((.....))).)	chr17:28444214-28444485(+)$1	1	179	196	8.7085
..((..(.....)..))	chr5:139493782-139494104(+)$1	1	178	195	7.4534
(((.(((.....)))))	chr7:100172738-100172979(-)$1	1	68	85	9.6705
.(((((......)))))	chr22:42298876-42299110(+)$1	1	126	143	7.3501
((((.((.....)))))	chr12:62996647-62996983(+)$1	1	98	115	10.3652
(....((.....)))))	chr13:111315268-111315519(-)$1	1	99	116	8.6401
.((((((.....)))))	chr14:24901494-24901759(+)$1	1	36	53	7.7440
(((.(.(.....).).)	chr2:220043013-220043409(+)$1	1	32	49	8.8248
..(((((.....)))))	chr3:49050612-49050868(+)$1	1	169	186	9.9461
.(.(.((.....)).).	chr13:113760895-113761294(+)$1	1	22	39	8.5649
(((.(((.....)))))	chr7:100172779-100173061(-)$1	1	150	167	9.6705
.(((((......)))))	chr6:111136129-111136401(-)$1	1	236	253	8.1946
.((((((.....)))))	chr3:48664362-48664659(-)$1	1	28	45	8.5886
(((((.(.....).)))	chr6:5000732-5000990(-)$1	1	28	45	8.7384
.(((((......)))))	chr6:91254232-91254531(-)$1	1	51	68	7.3501
.(.((((.....)))).	chr14:103574564-103574856(+)$1	1	71	88	8.7193
(((((((.....)))).	chr18:55990355-55990566(+)$1	1	9	26	8.4718
((((.((.....)))))	chr22:20074077-20074344(+)$1	1	140	157	10.3652
((((.(......)))))	chr2:219267724-219267949(+)$1	1	205	222	8.2602
(..((((.....)))).	chr12:58217991-58218476(-)$1	1	340	357	8.2823
((((.((.....)))))	chr9:139904664-139905000(-)$1	1	234	251	8.8363
((...((.....)))))	chr19:46522367-46522729(+)$1	1	149	166	8.8494
(((.(((......))).	chr16:28878114-28878410(+)$1	1	92	109	6.4320
.(((((......)))))	chr1:155033707-155034063(+)$1	1	79	96	7.3501
((((.((.....)).))	chr12:62996868-62997164(+)$1	1	269	286	9.2532
((((.((.....)).))	chr5:1065479-1065751(-)$1	1	253	270	8.8869
.(((((......)))))	chr6:128327053-128327395(-)$1	1	69	86	8.1752
.(((((......)))))	chr7:150066650-150066963(+)$1	1	71	88	8.1946
(((((((.....)))))	chr2:219266989-219267248(+)$1	1	27	44	9.7719
.(((((......)))))	chr7:150935307-150935575(+)$1	1	9	26	7.3501

#PSSM
e : 0.22	: : 0.17	c : 0.15	f : 0.12	! : 0.12	[ : 0.10	d : 0.05	= : 0.02	g : 0.02	
e : 0.42	f : 0.19	c : 0.12	! : 0.07	a : 0.05	d : 0.05	= : 0.02	# : 0.02	g : 0.02	
e : 0.45	f : 0.19	[ : 0.10	c : 0.07	d : 0.05	= : 0.02	b : 0.02	# : 0.02	! : 0.02	" : 0.02	
e : 0.40	d : 0.17	f : 0.15	[ : 0.12	! : 0.02	= : 0.02	b : 0.02	# : 0.02	a : 0.02	" : 0.02	
e : 0.30	[ : 0.22	d : 0.12	f : 0.10	c : 0.10	! : 0.05	= : 0.02	# : 0.02	a : 0.02	" : 0.02	
b : 0.27	e : 0.27	d : 0.12	c : 0.12	f : 0.07	[ : 0.05	= : 0.02	! : 0.02	a : 0.02	
b : 0.27	o : 0.24	d : 0.12	c : 0.12	f : 0.07	a : 0.07	e : 0.05	= : 0.02	
n : 0.70	o : 0.27	c : 0.02	
n : 0.70	o : 0.27	l : 0.02	
n : 0.70	o : 0.27	l : 0.02	
n : 0.70	o : 0.27	l : 0.02	
n : 0.70	o : 0.27	c : 0.02	
b : 0.27	e : 0.27	d : 0.12	c : 0.10	a : 0.10	f : 0.07	= : 0.02	o : 0.02	
e : 0.30	b : 0.27	d : 0.12	c : 0.12	f : 0.07	] : 0.05	= : 0.02	2 : 0.02	
e : 0.37	d : 0.15	c : 0.15	f : 0.12	] : 0.10	2 : 0.05	= : 0.02	a : 0.02	
e : 0.45	d : 0.17	f : 0.15	c : 0.07	] : 0.05	2 : 0.02	= : 0.02	b : 0.02	a : 0.02	
e : 0.47	f : 0.19	] : 0.12	c : 0.07	d : 0.05	= : 0.02	b : 0.02	2 : 0.02	

#score	342.0004552877577
#seq	40
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_transcript_m2_run2.txt

#BEAR
b=========="""cccrrrrrrrrrccc==========:	chr9:137237121-137237393(+)$1	272	205	245	15.4948
[eeeee[dddd[bb[cccooooooccc22bb]dddd]eee	chrM:14201-14443(-)$1	242	69	109	12.0004
iiiiiii!!a[a[cccooooooccc]a]a22iiiiiiiii	chr17:59474132-59474406(-)$1	274	73	113	16.3366
=============a[ddddmmmmdddd]a4444=======	chr17:70550220-70550459(-)$1	239	26	66	16.3565
[ccc[ffffff"""cccnnnnncccffffffccc]dddd]	chr22:20111014-20111282(+)$1	268	160	200	11.9761
[ccc[eeeee"""a[cccmmmmccc]a333eeeee]ccc]	chr16:23607232-23607525(-)$1	293	163	203	14.2059
============[a[a[cccmmmmccc]a22a]=======	chr2:241468160-241468407(-)$1	247	156	196	16.5188
========^^^^^^^^^^^^^^^^^^^^^^^=========	chr20:62685272-62685536(+)$1	264	52	92	12.9405
Hffffff"""bb[ccc[aooooooa]ccc]bb333fffff	chr7:1925492-1925773(-)$1	281	105	145	13.0306
:===========[ddddoooooodddd]===========:	chr11:68118222-68118508(+)$1	286	204	244	14.9502
bb[ccc[ccc[ccc"""cccmmmmccc333cccccc]ccc	chr13:76430828-76431115(+)$1	287	160	200	13.1699
========================================	chr7:158124814-158125100(-)$1	286	107	147	14.8798
$$$eeeee!!bb!!a[cccnnnnnccc]a22bb333eeee	chr18:77673170-77673426(-)$1	256	121	161	12.2959
===========[bb[bbnnnnnbb]bb]===========]	chr11:2152041-2152252(-)$1	211	148	188	14.7013
[bb[cccccc"""ccc"""bbmmmmbb4444ccc]ccc]c	chr22:39709904-39710160(-)$1	256	124	164	12.0255
ggggggg!!bb[cccddddmmmmdddd]ccc]bb333ggg	chr12:123998009-123998354(-)$1	345	279	319	12.4604
d[ccc!!dddd"""ddddmmmmdddd4444dddd]ccc]d	chr3:126255615-126255874(+)$1	259	201	241	12.8957
iiiiii[cccxxxxxxxxxxxxxxxccciiiiiiiii]bb	chr21:46852506-46852780(+)$1	274	9	49	12.8589
eebb"""ddddccc[accclllccc]accc]dddd4444b	chr7:2414097-2414367(+)$1	270	154	194	11.6889
dddd"""iiiiiiiiibbnnnnnbb]iiiiiiiii333dd	chr11:2152259-2152474(-)$1	215	3	43	12.5698
ddd[gggggggggggggglllggggggg4444gggggggd	chr21:46870533-46870784(+)$1	251	206	246	11.5168
eee[a[dddd"""a[ddddmmmmdddda22ddddaeeeee	chr11:2152330-2152534(-)$1	204	156	196	12.7607
ff"""eeeee####bbxxxxxxxxxxxxxxxbb22eeeee	chr2:134878269-134878542(+)$1	273	79	119	10.5747
iiiii[a[ccc[dddd[bbmmmmbb]ddddccc]a]iiii	chr8:48805692-48805933(-)$1	241	181	221	12.1546
eeeee"""cccgggggggnnnnnggggggg]ccc333eee	chr8:125700152-125700424(-)$1	272	55	95	12.2596
eee[a[dddd"""a[ddddmmmmdddda22ddddaeeeee	chr11:2152326-2152530(-)$1	204	152	192	12.7607
======[bb[ccc!!cccmmmmccc]ccc]bb========	chr7:158126035-158126295(-)$1	260	210	250	15.2209
eeee[ggggggg[a!!bbnnnnnbb333a]gggggggeee	chr9:117063684-117063927(+)$1	243	76	116	13.3926
%%iiiiiiiii####bbrrrrrrrrrbb22iiiiiiiii6	chr21:44075457-44075717(+)$1	260	13	53	12.9741
=========xxxxxxxxxxxxxxx================	chr3:49052723-49052983(+)$1	260	40	80	14.6329
==========[a[eeeeeooooooeeeee]a=========	chr7:158125820-158126054(-)$1	234	188	228	16.5318
bb!!a[dddd$$$$$ddddllldddd4444dddd]a4444	chr14:21679686-21679912(-)$1	226	33	73	12.8104
==========="""ddddoooooodddd==========]=	chr21:47560293-47560534(-)$1	241	26	66	18.2854
!bbffffff[a"""ddddoooooodddd333a]ffffff4	chr19:13250231-13250502(+)$1	271	96	136	14.4654
cc[ccc!!bb[ccc[bbnnnnnbbcccbb22ccc4444cc	chr6:86324699-86324961(-)$1	262	177	217	12.1923
ffff:a[===========oooooo===========]a::e	chr1:46035407-46035687(+)$1	280	136	176	12.1427
=[a[cccccc[bbccc[bbmmmmbb]ccc]bb]ccc4444	chr22:46752270-46752539(+)$1	269	109	149	12.2800
gggggg!!bb[a[ccc[cccooooooccc]ccca]bb666	chr4:83347667-83347884(-)$1	217	22	62	12.0260
gg[ffffffccc####cccnnnnnccc333ccc333ffff	chr17:80187857-80188097(+)$1	240	20	60	14.6132
[ffffffbb[ccccccooooooccc]ccc333bb]fffff	chr6:2377997-2378244(+)$1	247	169	209	12.4236
======[ccc"""a[a[aooooooa]a]a22ccc]=====	chr3:48586903-48587156(-)$1	253	53	93	19.4299
iiiiiii[ccc"""bb[bbmmmmbb]bb333ccc22iiii	chr12:121416414-121416660(+)$1	246	94	134	14.9774
ee!!eeeeeccc$$$$$ddddllldddd333ccc]eeeee	chr7:44838989-44839241(+)$1	252	198	238	11.7081
a[ffffff[bb"""ddddoooooodddd22bbffffff]a	chr7:158116410-158116676(-)$1	266	177	217	13.3731
ccc[ggggggg"""cccnnnnncccggggggg]ccc]bb:	chr7:157582185-157582450(-)$1	265	224	264	12.4417
:===========bb[a[allla]a]bb22===========	chr20:60935898-60936207(-)$1	309	55	95	14.7426
=========="""eeeeeooooooeeeee22=========	chr7:158133834-158134129(-)$1	295	66	106	17.3235
dddd[ggggggg!!ddddnnnnnddddggggggg]dddd2	chr16:2578644-2578912(+)$1	268	212	252	11.8514
e[a[bb[ccc$$$$$eeeeeooooooeeeeeccc]bb]a]	chr14:105907221-105907534(+)$1	313	234	274	11.3261
ggggggg[dddd[a[cccmmmmcccadddd]ggggggg]d	chr2:3628047-3628315(+)$1	268	149	189	12.5530
fffff!!ccc[ccc[a[ammmma]a]ccc]ccc4444fff	chr16:4721013-4721277(+)$1	264	102	142	13.6426

#otherMatches

#Seq PSSM
CUGGCCUUGGUGGCCUCCAUCAAGUAGAGACCAAGGCCAC	chr9:137237121-137237393(+)$1	272	205	245	15.4948
GGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGG	chrM:14201-14443(-)$1	242	69	109	12.0004
GACCUUCCCCGGGUUGAGCCUCCAGGUGGCAGGGGGUCCC	chr17:59474132-59474406(-)$1	274	73	113	16.3366
ugcaugugugcccagguguuugagcauguagaugggugca	chr17:70550220-70550459(-)$1	239	26	66	16.3565
UGGGCGCCUCUGAAGCUACAUAAGUAGAGGCCCUUGGGCA	chr22:20111014-20111282(+)$1	268	160	200	11.9761
CGCCAGCUGCAGGCAGGGGUGACCCGGGGGGCAGCCGGCU	chr16:23607232-23607525(-)$1	293	163	203	14.2059
UCCUGGGGCCCUGGACGUCUGUGCAGGGGAAUGAGGGUCU	chr2:241468160-241468407(-)$1	247	156	196	16.5188
CUUCCCAGUGAUGUUUGUGUGUGUGUGUGUGUUGGGGGGG	chr20:62685272-62685536(+)$1	264	52	92	12.9405
CCCAGGUGGGGCGGUCGUGGGGUGGAGGCAGUAGGACCUG	chr7:1925492-1925773(-)$1	281	105	145	13.0306
ugugcaugcaugcgugugaguggauauuuguguguguaug	chr11:68118222-68118508(+)$1	286	204	244	14.9502
GAUGGUGUCUUGUGUUAUCUGCCCAGAGUCCGCAGAGACC	chr13:76430828-76431115(+)$1	287	160	200	13.1699
UGACGUCUGCAGAUGUCACCUCUUAUCGUGAGAGUGUGGG	chr7:158124814-158125100(-)$1	286	107	147	14.8798
UUGGUGUUGACAGAUGGGGAGGAGCCUGAAAUGCGGAAUA	chr18:77673170-77673426(-)$1	256	121	161	12.2959
CUCCUGGGGACCCCCCAAGAAAUGUGGAGUCCUCGGGGGC	chr11:2152041-2152252(-)$1	211	148	188	14.7013
UGCUAGCAGGAUCGUUAACUGAAGCCAACACAACACCUAG	chr22:39709904-39710160(-)$1	256	124	164	12.0255
UAGGAGUCAGGCGCCAGGCUUCUGCCUCGGUCUCAUAGCU	chr12:123998009-123998354(-)$1	345	279	319	12.4604
caugcaggcuguggucaggaugcugagauccagcagcaag	chr3:126255615-126255874(+)$1	259	201	241	12.8957
CUCCAGUCAGAGCAUCUGGACCAUACUGCUGGGGUCAGAG	chr21:46852506-46852780(+)$1	274	9	49	12.8589
GCGCUCUGAGCCUGUCCGCCCUGUGAGUAGCGCUCUGCUG	chr7:2414097-2414367(+)$1	270	154	194	11.6889
GGUGCGGCCUGAGUGUGCGGCCGGCGGCAUUUGGGAUACA	chr11:2152259-2152474(-)$1	215	3	43	12.5698
CACAGCCAGCUGCUUCAACGUUUGGAGCCCGUGGCUGGCG	chr21:46870533-46870784(+)$1	251	206	246	11.5168
CAGAGAUGCCCUUGUGAGGCUGGCCUCCUUGGCGCCUGUC	chr11:2152330-2152534(-)$1	204	156	196	12.7607
GCCAGUGGGGAGGAAGGAAGAAGGAGGGAGGCUGGCCCCG	chr2:134878269-134878542(+)$1	273	79	119	10.5747
GUGCUACAACACGUUCAUUGGCGAGAGAACUGUAGGAGCG	chr8:48805692-48805933(-)$1	241	181	221	12.1546
UGUUUACAAUUGAAAUGGAACUCUUAUUUCUAGUAAAAGA	chr8:125700152-125700424(-)$1	272	55	95	12.2596
CAGAGAUGCCCUUGUGAGGCUGGCCUCCUUGGCGCCUGUC	chr11:2152326-2152530(-)$1	204	152	192	12.7607
UGUCACCUCUUAUGGUGCGAGUGUGGGUGUGAGUGACGUC	chr7:158126035-158126295(-)$1	260	210	250	15.2209
AGGGCUGUGGGGCGGGGCGUGGGGCGGGCACCCUGCAUUC	chr9:117063684-117063927(+)$1	243	76	116	13.3926
GCAGCUCUCUUGGAAGCAGGUGAAAAGUGGAGGAGAGCUU	chr21:44075457-44075717(+)$1	260	13	53	12.9741
ACAGACAGCAUGGAGCAGGGAUGGGCUGUCUGUGCCCAUG	chr3:49052723-49052983(+)$1	260	40	80	14.6329
ACGUCUGCAGGUGUCACCUCUUAUGGUGAGACUGUGGGUG	chr7:158125820-158126054(-)$1	234	188	228	16.5318
GCAAUGUAAUAUGAAACUUGGGGAGUGUGAAUUGGGAAGG	chr14:21679686-21679912(-)$1	226	33	73	12.8104
ACACUCCCUGUGAGCCACGUGAAGGUGGACGGGGAGUGCU	chr21:47560293-47560534(-)$1	241	26	66	18.2854
guguggaguguguguguguguUUCCAUGGUAGGACUCCAG	chr19:13250231-13250502(+)$1	271	96	136	14.4654
CCGGUUAUUCACAGAGAGGAGGUCCUGGAUCAGCAAGAGG	chr6:86324699-86324961(-)$1	262	177	217	12.1923
UAUCUGUCUCUCUUUCCAGGUGGAUGGGAAGAGAGUCCCA	chr1:46035407-46035687(+)$1	280	136	176	12.1427
AACCUGGGGUGAGGGAAGCGGAAGCAUCCUCUGGCUGCCA	chr22:46752270-46752539(+)$1	269	109	149	12.2800
AGACAAGAACGCAUCAUUUUAUGUUAGAAUUGGGGGUCAG	chr4:83347667-83347884(-)$1	217	22	62	12.0260
CUGCUGGGCGGGAAAUGGCAGUUGGCCCACCCCAAGGCCC	chr17:80187857-80188097(+)$1	240	20	60	14.6132
CCCCAUGAGCUGAGUACUGUCCUGCUUCACACCUGCAUGG	chr6:2377997-2378244(+)$1	247	169	209	12.4236
GGAUCUCUCAGGAUGUGGUGGGGGUGGGAGGUGAUGGGUU	chr3:48586903-48587156(-)$1	253	53	93	19.4299
ACGCGGUGGGGGAGGCGGCUAGCGUGGUGGACCCGGGCCG	chr12:121416414-121416660(+)$1	246	94	134	14.9774
UCUAUUUAACCCUUCUAUUCAGUUUGAACUUGGGUUUAAA	chr7:44838989-44839241(+)$1	252	198	238	11.7081
UGCAGCCCCACAGACUAUAUGAGAAUAGAAGUGGGCUGGA	chr7:158116410-158116676(-)$1	266	177	217	13.3731
UUGAAGAGAAGCCCAGGCCGCCCCUUUUCUCUCCGGCAGA	chr7:157582185-157582450(-)$1	265	224	264	12.4417
CGGGGCGGGAAGCUGGGCACUGGCGAGUUCUUCCCGCCUC	chr20:60935898-60936207(-)$1	309	55	95	14.7426
ACGUCUGCAUGUGUUACCUCUUAUGGUGAGAGUGUGGGUG	chr7:158133834-158134129(-)$1	295	66	106	17.3235
CAGGGUGACAGGCAGACCAGCAGGGUCCUUGUUAGCCUGC	chr16:2578644-2578912(+)$1	268	212	252	11.8514
CAGGUGGUCCCACAGAGCCCUUCCCUGGGCUGGAGCAGUG	chr14:105907221-105907534(+)$1	313	234	274	11.3261
CCGGUGCAGUGGUGUACAGUUCUGUCCCACAGCAUUGGAG	chr2:3628047-3628315(+)$1	268	149	189	12.5530
GAGGCGGUCAGGGGGUGGUGGUUGGGCCUGUGGGUUGGCU	chr16:4721013-4721277(+)$1	264	102	142	13.6426

#DB
)((((((((((...(((.........))))))))))))).	chr9:137237121-137237393(+)$1	1	205	245	15.4948
.(((((.((((.((.(((......)))..)).)))).)))	chrM:14201-14443(-)$1	1	69	109	12.0004
(((((((..(.(.(((......))).).)..)))))))))	chr17:59474132-59474406(-)$1	1	73	113	16.3366
((((((((((((((.((((....)))).)....)))))))	chr17:70550220-70550459(-)$1	1	26	66	16.3565
.(((.((((((...(((.....)))))))))))).)))).	chr22:20111014-20111282(+)$1	1	160	200	11.9761
.(((.(((((...(.(((....))).)...))))).))).	chr16:23607232-23607525(-)$1	1	163	203	14.2059
((((((((((((.(.(.(((....))).)..).)))))))	chr2:241468160-241468407(-)$1	1	156	196	16.5188
((((((((.......................)))))))))	chr20:62685272-62685536(+)$1	1	52	92	12.9405
)((((((...((.(((.(......).))).))...)))))	chr7:1925492-1925773(-)$1	1	105	145	13.0306
.(((((((((((.((((......)))).))))))))))).	chr11:68118222-68118508(+)$1	1	204	244	14.9502
((.(((.(((.(((...(((....)))...)))))).)))	chr13:76430828-76431115(+)$1	1	160	200	13.1699
)))))))))))))))))))(((((((((((((((((((((	chr7:158124814-158125100(-)$1	1	107	147	14.8798
...(((((..((..(.(((.....))).)..))...))))	chr18:77673170-77673426(-)$1	1	121	161	12.2959
(((((((((((.((.((.....)).)).))))))))))).	chr11:2152041-2152252(-)$1	1	148	188	14.7013
.((.((((((...(((...((....))....))).))).)	chr22:39709904-39710160(-)$1	1	124	164	12.0255
(((((((..((.(((((((....)))).))).))...)))	chr12:123998009-123998354(-)$1	1	279	319	12.4604
(.(((..((((...((((....))))....)))).))).)	chr3:126255615-126255874(+)$1	1	201	241	12.8957
((((((.(((...............)))))))))))).))	chr21:46852506-46852780(+)$1	1	9	49	12.8589
((((...(((((((.((((...))).)))).))))....)	chr7:2414097-2414367(+)$1	1	154	194	11.6889
((((...(((((((((((.....)).)))))))))...))	chr11:2152259-2152474(-)$1	1	3	43	12.5698
(((.((((((((((((((...)))))))....))))))))	chr21:46870533-46870784(+)$1	1	206	246	11.5168
(((.(.((((...(.((((....)))))..))))))))))	chr11:2152330-2152534(-)$1	1	156	196	12.7607
((...(((((....((...............))..)))))	chr2:134878269-134878542(+)$1	1	79	119	10.5747
(((((.(.(((.((((.((....)).))))))).).))))	chr8:48805692-48805933(-)$1	1	181	221	12.1546
(((((...((((((((((.....))))))).)))...)))	chr8:125700152-125700424(-)$1	1	55	95	12.2596
(((.(.((((...(.((((....)))))..))))))))))	chr11:2152326-2152530(-)$1	1	152	192	12.7607
((((((.((.(((..(((....))).))).))))))))))	chr7:158126035-158126295(-)$1	1	210	250	15.2209
((((.(((((((.(..((.....))...).))))))))))	chr9:117063684-117063927(+)$1	1	76	116	13.3926
..(((((((((....((.........))..))))))))).	chr21:44075457-44075717(+)$1	1	13	53	12.9741
(((((((((...............))))))))))))))))	chr3:49052723-49052983(+)$1	1	40	80	14.6329
((((((((((.(.(((((......))))).))))))))))	chr7:158125820-158126054(-)$1	1	188	228	16.5318
((..(.((((.....((((...))))....)))).)....	chr14:21679686-21679912(-)$1	1	33	73	12.8104
(((((((((((...((((......)))))))))))))).)	chr21:47560293-47560534(-)$1	1	26	66	18.2854
.((((((((.(...((((......))))...).)))))).	chr19:13250231-13250502(+)$1	1	96	136	14.4654
((.(((..((.(((.((.....)))))))..)))....))	chr6:86324699-86324961(-)$1	1	177	217	12.1923
)))).(.(((((((((((......))))))))))).)..(	chr1:46035407-46035687(+)$1	1	136	176	12.1427
(.(.((((((.(((((.((....)).))).)).)))....	chr22:46752270-46752539(+)$1	1	109	149	12.2800
((((((..((.(.(((.(((......))).)))).))...	chr4:83347667-83347884(-)$1	1	22	62	12.0260
((.(((((((((....(((.....)))...)))...))))	chr17:80187857-80188097(+)$1	1	20	60	14.6132
.((((((((.((((((......))).)))...)).)))))	chr6:2377997-2378244(+)$1	1	169	209	12.4236
((((((.(((...(.(.(......).).)..))).)))))	chr3:48586903-48587156(-)$1	1	53	93	19.4299
(((((((.(((...((.((....)).))...)))..))))	chr12:121416414-121416660(+)$1	1	94	134	14.9774
((..((((((((.....((((...))))...))).)))))	chr7:44838989-44839241(+)$1	1	198	238	11.7081
(.((((((.((...((((......))))..)))))))).)	chr7:158116410-158116676(-)$1	1	177	217	13.3731
(((.(((((((...(((.....)))))))))).))).)).	chr7:157582185-157582450(-)$1	1	224	264	12.4417
.(((((((((((((.(.(...).).))..)))))))))))	chr20:60935898-60936207(-)$1	1	55	95	14.7426
((((((((((...(((((......)))))..)))))))))	chr7:158133834-158134129(-)$1	1	66	106	17.3235
((((.(((((((..((((.....))))))))))).)))).	chr16:2578644-2578912(+)$1	1	212	252	11.8514
(.(.((.(((.....(((((......)))))))).)).).	chr14:105907221-105907534(+)$1	1	234	274	11.3261
(((((((.((((.(.(((....)))))))).))))))).)	chr2:3628047-3628315(+)$1	1	149	189	12.5530
(((((..(((.(((.(.(....).).))).)))....)))	chr16:4721013-4721277(+)$1	1	102	142	13.6426

#PSSM
= : 0.23	e : 0.13	[ : 0.09	i : 0.07	g : 0.07	d : 0.07	b : 0.05	f : 0.05	: : 0.03	c : 0.03	H : 0.01	$ : 0.01	% : 0.01	! : 0.01	a : 0.01	
= : 0.27	e : 0.13	f : 0.09	i : 0.07	c : 0.07	b : 0.07	g : 0.07	[ : 0.07	d : 0.05	$ : 0.01	% : 0.01	
= : 0.27	e : 0.09	i : 0.09	f : 0.09	c : 0.07	[ : 0.05	b : 0.05	g : 0.05	d : 0.05	! : 0.03	a : 0.03	$ : 0.01	" : 0.01	
= : 0.27	f : 0.13	[ : 0.13	i : 0.09	c : 0.09	e : 0.07	g : 0.05	d : 0.03	! : 0.03	b : 0.01	" : 0.01	
= : 0.27	f : 0.11	i : 0.09	c : 0.09	g : 0.09	e : 0.07	[ : 0.07	" : 0.05	a : 0.05	: : 0.01	b : 0.01	
= : 0.27	g : 0.13	f : 0.11	e : 0.09	i : 0.07	c : 0.07	[ : 0.07	" : 0.05	! : 0.03	a : 0.01	b : 0.01	
= : 0.23	[ : 0.13	f : 0.11	g : 0.11	e : 0.07	! : 0.07	i : 0.05	" : 0.05	d : 0.05	c : 0.03	a : 0.01	
= : 0.25	c : 0.13	d : 0.11	! : 0.07	f : 0.07	e : 0.07	g : 0.07	[ : 0.05	" : 0.03	i : 0.03	b : 0.03	
= : 0.23	c : 0.19	d : 0.13	g : 0.07	b : 0.07	! : 0.05	f : 0.05	e : 0.05	i : 0.03	^ : 0.01	" : 0.01	[ : 0.01	
c : 0.23	= : 0.21	d : 0.13	b : 0.07	g : 0.07	[ : 0.05	e : 0.03	i : 0.03	a : 0.01	f : 0.01	^ : 0.01	" : 0.01	! : 0.01	x : 0.01	
= : 0.17	[ : 0.13	c : 0.13	" : 0.11	d : 0.07	b : 0.07	g : 0.07	x : 0.03	i : 0.03	$ : 0.03	f : 0.01	^ : 0.01	# : 0.01	a : 0.01	
" : 0.27	c : 0.15	= : 0.11	[ : 0.07	g : 0.07	a : 0.05	b : 0.05	x : 0.03	# : 0.03	$ : 0.03	^ : 0.01	i : 0.01	d : 0.01	
" : 0.27	[ : 0.15	c : 0.13	b : 0.07	= : 0.05	# : 0.05	$ : 0.05	! : 0.03	x : 0.03	g : 0.03	^ : 0.01	i : 0.01	d : 0.01	
c : 0.21	" : 0.15	a : 0.15	b : 0.05	! : 0.05	# : 0.05	$ : 0.05	d : 0.03	= : 0.03	x : 0.03	g : 0.03	e : 0.03	^ : 0.01	i : 0.01	
[ : 0.25	c : 0.19	d : 0.13	$ : 0.05	= : 0.03	x : 0.03	g : 0.03	b : 0.03	! : 0.03	# : 0.03	e : 0.03	^ : 0.01	" : 0.01	a : 0.01	i : 0.01	
c : 0.25	d : 0.23	a : 0.09	b : 0.09	e : 0.05	= : 0.03	x : 0.03	g : 0.03	^ : 0.01	" : 0.01	[ : 0.01	i : 0.01	! : 0.01	# : 0.01	$ : 0.01	
d : 0.21	c : 0.19	[ : 0.17	b : 0.09	x : 0.05	e : 0.05	o : 0.03	" : 0.03	= : 0.03	g : 0.03	^ : 0.01	$ : 0.01	
d : 0.21	c : 0.19	b : 0.09	n : 0.07	a : 0.07	o : 0.05	x : 0.05	e : 0.05	r : 0.03	= : 0.03	g : 0.03	^ : 0.01	" : 0.01	
o : 0.23	n : 0.15	d : 0.11	c : 0.11	m : 0.09	x : 0.05	b : 0.05	r : 0.03	l : 0.03	^ : 0.01	= : 0.01	" : 0.01	e : 0.01	
o : 0.23	m : 0.23	n : 0.19	l : 0.07	c : 0.05	x : 0.05	r : 0.03	^ : 0.01	= : 0.01	b : 0.01	d : 0.01	e : 0.01	
o : 0.27	m : 0.27	n : 0.19	l : 0.07	x : 0.05	r : 0.03	^ : 0.01	= : 0.01	b : 0.01	d : 0.01	
m : 0.29	o : 0.27	n : 0.19	x : 0.05	l : 0.05	r : 0.03	^ : 0.01	= : 0.01	g : 0.01	a : 0.01	
o : 0.23	m : 0.19	c : 0.15	n : 0.11	x : 0.05	r : 0.03	b : 0.03	d : 0.03	^ : 0.01	= : 0.01	g : 0.01	l : 0.01	] : 0.01	a : 0.01	
o : 0.21	c : 0.15	d : 0.15	b : 0.13	m : 0.05	x : 0.05	r : 0.03	n : 0.03	g : 0.03	^ : 0.01	= : 0.01	l : 0.01	a : 0.01	] : 0.01	
c : 0.27	d : 0.23	b : 0.09	a : 0.05	= : 0.05	r : 0.03	] : 0.03	x : 0.03	g : 0.03	e : 0.03	o : 0.03	^ : 0.01	m : 0.01	
] : 0.23	d : 0.23	c : 0.13	= : 0.05	b : 0.05	g : 0.05	r : 0.03	e : 0.03	o : 0.03	f : 0.01	^ : 0.01	x : 0.01	3 : 0.01	a : 0.01	
c : 0.27	d : 0.23	b : 0.09	a : 0.07	= : 0.05	g : 0.05	e : 0.05	4 : 0.03	f : 0.01	^ : 0.01	i : 0.01	x : 0.01	3 : 0.01	
c : 0.17	] : 0.15	d : 0.11	3 : 0.07	g : 0.07	= : 0.05	4 : 0.05	b : 0.05	e : 0.05	2 : 0.03	a : 0.03	f : 0.01	^ : 0.01	i : 0.01	x : 0.01	
c : 0.17	2 : 0.11	a : 0.11	3 : 0.11	= : 0.11	4 : 0.07	g : 0.05	e : 0.05	i : 0.03	d : 0.03	f : 0.01	^ : 0.01	x : 0.01	b : 0.01	
2 : 0.19	= : 0.15	3 : 0.13	] : 0.13	4 : 0.09	g : 0.05	c : 0.03	i : 0.03	d : 0.03	b : 0.01	f : 0.01	^ : 0.01	x : 0.01	e : 0.01	
= : 0.15	2 : 0.11	c : 0.11	b : 0.09	d : 0.07	3 : 0.07	4 : 0.05	i : 0.05	] : 0.05	g : 0.05	e : 0.03	f : 0.01	^ : 0.01	x : 0.01	a : 0.01	
c : 0.25	= : 0.21	b : 0.11	d : 0.09	i : 0.07	g : 0.07	] : 0.03	4 : 0.03	a : 0.03	e : 0.01	3 : 0.01	
c : 0.25	= : 0.23	d : 0.11	i : 0.07	] : 0.07	b : 0.07	g : 0.07	4 : 0.01	e : 0.01	3 : 0.01	f : 0.01	
= : 0.27	c : 0.21	d : 0.11	i : 0.07	g : 0.07	3 : 0.05	b : 0.03	f : 0.03	e : 0.01	2 : 0.01	] : 0.01	a : 0.01	4 : 0.01	
= : 0.27	] : 0.19	3 : 0.09	i : 0.07	c : 0.05	g : 0.05	a : 0.05	d : 0.03	2 : 0.03	f : 0.03	4 : 0.03	e : 0.01	
= : 0.27	c : 0.09	3 : 0.09	f : 0.07	e : 0.07	d : 0.05	i : 0.05	] : 0.05	4 : 0.05	g : 0.05	b : 0.03	a : 0.01	2 : 0.01	
= : 0.27	i : 0.09	f : 0.09	e : 0.09	4 : 0.09	] : 0.05	c : 0.05	3 : 0.05	g : 0.05	d : 0.03	b : 0.03	a : 0.01	
= : 0.27	e : 0.15	f : 0.11	i : 0.07	c : 0.07	4 : 0.07	g : 0.05	d : 0.03	] : 0.03	3 : 0.01	: : 0.01	6 : 0.01	b : 0.01	
= : 0.25	e : 0.15	f : 0.09	] : 0.09	i : 0.07	d : 0.05	c : 0.05	4 : 0.05	g : 0.03	b : 0.03	: : 0.01	6 : 0.01	a : 0.01	
= : 0.21	e : 0.17	] : 0.07	f : 0.07	d : 0.07	: : 0.05	i : 0.05	c : 0.05	4 : 0.05	b : 0.03	6 : 0.03	g : 0.01	a : 0.01	2 : 0.01	

#score	692.7468150528396
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_CDS_m2_run1.txt

#BEAR
ggggccctttttttttttcccdddd	chr5:151183345-151183603(+)$1	258	129	154	24.1545
c[eeeeettttttttttteeeee33	chr15:44843545-44843824(+)$1	279	237	262	23.6273
:ffffffuuuuuuuuuuuuffffff	chr20:17934561-17934815(-)$1	254	22	47	21.9536
[a[ddddvvvvvvvvvvvvvdddd]	chr16:50655448-50655720(+)$1	272	154	179	23.3564
eee[ccctttttttttttccceeee	chr10:7840853-7841161(+)$1	308	55	80	24.0998
###ddddwwwwwwwwwwwwwwdddd	chr19:5600026-5600360(-)$1	334	94	119	21.0373
!!eeeeettttttttttteeeee22	chr2:27607787-27608056(-)$1	269	155	180	23.4298
ddd!!bbvvvvvvvvvvvvvbb22d	chr2:232325130-232325372(-)$1	242	131	156	21.9328
iiiii[avvvvvvvvvvvvvaiiii	chr2:172582023-172582307(+)$1	284	212	237	24.0836
ccc[ccctttttttttttccc]ccc	chr11:35684881-35685240(+)$1	359	74	99	24.3678
gggggggwwwwwwwwwwwwwwgggg	chr14:73566274-73566563(+)$1	289	76	101	22.4092
c[eeeeewwwwwwwwwwwwwweeee	chr2:110303627-110303911(-)$1	284	125	150	21.6882
cc[ddddvvvvvvvvvvvvvdddd3	chr19:8531015-8531242(+)$1	227	173	198	23.1651
ffffffvvvvvvvvvvvvvffffff	chr6:129962858-129963151(-)$1	293	117	142	22.5191
&fffffftttttttttttffffff7	chr6:4032681-4033029(+)$1	348	85	110	22.0483
::eeeeettttttttttteeeeedd	chr14:23528446-23528709(-)$1	263	26	51	21.2121
ggdddduuuuuuuuuuuudddd]gg	chr1:46072982-46073280(+)$1	298	260	285	22.1846
))))cccvvvvvvvvvvvvvccc88	chr14:102551125-102551383(-)$1	258	56	81	21.2583
gggggggtttttttttttggggggg	chr6:4032038-4032321(+)$1	283	204	229	24.2351
&&eeeeettttttttttteeeeecc	chr14:39648288-39648550(+)$1	262	24	49	22.2442
+++cccuuuuuuuuuuuuccc>>>>	chr9:139734670-139734893(+)$1	223	112	137	20.0699
gggggggyyyyyyyyyyyyyyyygg	chr6:168352699-168352968(+)$1	269	39	64	20.5092
gggggggtttttttttttggggggg	chr17:76183350-76183616(+)$1	266	155	180	24.2351
e[eeeeeuuuuuuuuuuuueeeee]	chr17:73664511-73664806(+)$1	295	232	257	23.3140
"a[dddduuuuuuuuuuuudddda4	chr8:623433-623751(-)$1	318	272	297	22.8509
!!eeeeettttttttttteeeeeee	chr4:113568222-113568559(+)$1	337	278	303	23.5442
ff!!ccctttttttttttcccffff	chr2:190339838-190340189(+)$1	351	151	176	24.0503
[ffffffvvvvvvvvvvvvvfffff	chr1:205689657-205689881(-)$1	224	52	77	23.3171
hhhhhhhttttttttttthhhhhhh	chr14:21679866-21680096(-)$1	230	122	147	21.8959
gggggggtttttttttttggggggg	chr16:87799276-87799610(-)$1	334	195	220	24.2351
ccc[bbvvvvvvvvvvvvvbb]ccc	chr20:47740903-47741179(-)$1	276	185	210	22.3713
eeeeccctttttttttttccc]eee	chr2:242194884-242195096(-)$1	212	185	210	24.0431
[fffffftttttttttttffffff]	chrX:70517581-70517859(+)$1	278	122	147	23.3818
ddddccctttttttttttccc]ddd	chr3:142735581-142735803(+)$1	222	124	149	23.5958
dddddddtttttttttttdddd]dd	chr15:44063286-44063547(+)$1	261	185	210	22.3741
hhhhhhhvvvvvvvvvvvvvhhhhh	chr12:95879553-95879793(+)$1	240	52	77	22.3209
ddddcccwwwwwwwwwwwwwwccc]	chr19:15366774-15367122(-)$1	348	319	344	21.7416
hhhhhhhttttttttttthhhhhhh	chr20:34317289-34317550(-)$1	261	171	196	21.8959
iiiiiiitttttttttttiiiiiii	chr2:201726338-201726590(-)$1	252	32	57	23.9985
dddd[bbtttttttttttbb]dddd	chr6:7581094-7581367(+)$1	273	89	114	21.9441
eeeeccctttttttttttccc333e	chr19:6381269-6381568(-)$1	299	213	238	23.9837
dd[ddddvvvvvvvvvvvvvdddd2	chr6:7579630-7579996(+)$1	366	70	95	22.7358
[bb[ccctttttttttttccc]bb]	chr3:52724589-52724820(+)$1	231	181	206	23.5627
$eeeeeuuuuuuuuuuuueeeee33	chr12:58112685-58113014(+)$1	329	188	213	22.4106
gggggggtttttttttttggggggg	chr17:76799538-76799937(-)$1	399	143	168	24.2351
gggggggtttttttttttggggggg	chr11:102239111-102239387(+)$1	276	159	184	24.2351
hhhhhhhuuuuuuuuuuuuhhhhhh	chr14:35264769-35265075(-)$1	306	20	45	21.9347
[dddd[attttttttttta]ddddb	chr2:232577058-232577275(+)$1	217	151	176	23.0598
b!!cccwwwwwwwwwwwwwwccc22	chr9:131456203-131456422(+)$1	219	109	134	21.6689
gggggggtttttttttttggggggg	chr17:7139376-7139690(-)$1	314	126	151	24.2351
ggg[cccuuuuuuuuuuuuccc]gg	chr7:127975764-127976084(-)$1	320	178	203	24.3785
eeeee[avvvvvvvvvvvvva]eee	chr14:23549498-23549762(-)$1	264	115	140	23.5017
gggggggtttttttttttggggggg	chr6:26056034-26056338(-)$1	304	170	195	24.2351
!ffffffuuuuuuuuuuuuffffff	chr17:38555191-38555443(-)$1	252	139	164	23.0808
[ffffffwwwwwwwwwwwwwwffff	chrX:132833822-132834060(-)$1	238	42	67	21.5553
''a[ccctttttttttttccc]a66	chr8:103300282-103300596(-)$1	314	157	182	22.3750
ccc[ccctttttttttttccc]ccc	chr1:24979319-24979615(+)$1	296	101	126	24.3678
ggg[cccwwwwwwwwwwwwwwccc]	chr2:242195513-242195763(-)$1	250	188	213	22.5212
iiiiiiuuuuuuuuuuuuiiiiiii	chr16:11990471-11990743(-)$1	272	91	116	23.0358
ddd!!bbvvvvvvvvvvvvvbb22d	chr2:232325088-232325297(-)$1	209	56	81	21.9328
=======ttttttttttt=======	chr8:124381985-124382263(-)$1	278	231	256	24.2049
ffffffyyyyyyyyyyyyyyyyfff	chr2:29169490-29169778(+)$1	288	168	193	19.8178
!!eeeeevvvvvvvvvvvvveeeee	chr20:39709724-39709986(+)$1	262	81	106	23.6613
[ffffffwwwwwwwwwwwwwwffff	chr2:232326575-232326825(-)$1	250	204	229	21.5553
ii!!cccvvvvvvvvvvvvvccc]i	chr16:11931694-11931962(-)$1	268	233	258	24.3004

#otherMatches

#Seq PSSM
GAAUGUCGAAGAGAAGAAGACUCGA	chr5:151183345-151183603(+)$1	258	129	154	24.1545
UGCAAAUAUUACCUAGGAAUUUGAA	chr15:44843545-44843824(+)$1	279	237	262	23.6273
AAGAGGCUCAUGAGUUCCUGCCUCU	chr20:17934561-17934815(-)$1	254	22	47	21.9536
AGCAGCUGAAGUUUGAAGUAAGUUU	chr16:50655448-50655720(+)$1	272	154	179	23.3564
GUGUAUUGCAUAUAAAAAAAUUACU	chr10:7840853-7841161(+)$1	308	55	80	24.0998
UAAUUAAGAAGGAAGAGAAGAUUGA	chr19:5600026-5600360(-)$1	334	94	119	21.0373
AGCUGCUGACACGCUACGGGCAGAA	chr2:27607787-27608056(-)$1	269	155	180	23.4298
GGAAAUGGCCAAACAGAAAGCAGCU	chr2:232325130-232325372(-)$1	242	131	156	21.9328
AUUAAACUUUAAAACAUUUUGUUGA	chr2:172582023-172582307(+)$1	284	212	237	24.0836
ugagucggaggaagagagcgaguca	chr11:35684881-35685240(+)$1	359	74	99	24.3678
CCUCCUGUGCCCGUUUUCUUUUAGG	chr14:73566274-73566563(+)$1	289	76	101	22.4092
GACUUCACCAAGAAGAGAGAAUGAA	chr2:110303627-110303911(-)$1	284	125	150	21.6882
ACAUUCUUGAAGAUAAAGAUGGAAA	chr19:8531015-8531242(+)$1	227	173	198	23.1651
ACUAGAAAACAUCAAGAAAUCUAGU	chr6:129962858-129963151(-)$1	293	117	142	22.5191
AUAGGUCACCCAGCAGAAGACCUGG	chr6:4032681-4033029(+)$1	348	85	110	22.0483
AUCGUUCAGAAAGAGGCAGAGCGGG	chr14:23528446-23528709(-)$1	263	26	51	21.2121
AGGACCGAAUGAAGCUGAGGUCACU	chr1:46072982-46073280(+)$1	298	260	285	22.1846
GGAACGUGAUAAAGAAGUAAGCGAU	chr14:102551125-102551383(-)$1	258	56	81	21.2583
UUCAAGUACAAAGGGGAAACUUGAA	chr6:4032038-4032321(+)$1	283	204	229	24.2351
AUUGAACAAAAACUUGAAGUUCAGG	chr14:39648288-39648550(+)$1	262	24	49	22.2442
aaagcugccaagaagaagagcaaac	chr9:139734670-139734893(+)$1	223	112	137	20.0699
CUGGAGUGGCAGUUCCAGAAGAGAC	chr6:168352699-168352968(+)$1	269	39	64	20.5092
UCUGCAGAGGUAGGUGGAUUGCAGG	chr17:76183350-76183616(+)$1	266	155	180	24.2351
AAUUUCAUUUGUCAGAUUUUGGAAC	chr17:73664511-73664806(+)$1	295	232	257	23.3140
AGACACCAGGGAGGAGGACGGUGCG	chr8:623433-623751(-)$1	318	272	297	22.8509
UCCACUGAACCCCAAAAGCAGUGCU	chr4:113568222-113568559(+)$1	337	278	303	23.5442
AGAUUCAGAUGAAGAAAAUGAUUUU	chr2:190339838-190340189(+)$1	351	151	176	24.0503
AAUAUAAAAUUCUUUAAUCAUUAUA	chr1:205689657-205689881(-)$1	224	52	77	23.3171
AAGCAGGUAAAUGGGUUUUCUGCUU	chr14:21679866-21680096(-)$1	230	122	147	21.8959
CGCUCGCGGAAGGAGGAGGUGAGCG	chr16:87799276-87799610(-)$1	334	195	220	24.2351
AGGAGCUGAAGAAGUUACCGCCCCU	chr20:47740903-47741179(-)$1	276	185	210	22.3713
GAGAUCCUUGAGAGAACUGGAGUUU	chr2:242194884-242195096(-)$1	212	185	210	24.0431
GCGCCGUGAAGAAGAGAUGCGGCGG	chrX:70517581-70517859(+)$1	278	122	147	23.3818
AAGAGGUAAAAUCUAUAAGCCAUCU	chr3:142735581-142735803(+)$1	222	124	149	23.5958
CAUUGGGGAGGACUAGGACCCAUAU	chr15:44063286-44063547(+)$1	261	185	210	22.3741
UAAUUUUAUUUUUAACUACAGAAGU	chr12:95879553-95879793(+)$1	240	52	77	22.3209
CUGCCCCUCCCUGUCCUCAUUGGGU	chr19:15366774-15367122(-)$1	348	319	344	21.7416
UUAAACAUACUUCUGAAUUGUUUAA	chr20:34317289-34317550(-)$1	261	171	196	21.8959
CCUGAUUGGGAUGACAAGGAUUGGG	chr2:201726338-201726590(-)$1	252	32	57	23.9985
CUCCUGCAAGAGGAAGAAGCUGGAG	chr6:7581094-7581367(+)$1	273	89	114	21.9441
GCCCCCAUAUUGGAGGCUUGGGUCG	chr19:6381269-6381568(-)$1	299	213	238	23.9837
CUAAGCAAAAUCUAGACAAGUGCUA	chr6:7579630-7579996(+)$1	366	70	95	22.7358
AUAUGAUGAGUGUACAAAAUCUUGA	chr3:52724589-52724820(+)$1	231	181	206	23.5627
ACUGGAGGAAAAACAGAGUCCAGAG	chr12:58112685-58113014(+)$1	329	188	213	22.4106
GCCUCCCACAGCACAUCAGGGAGGC	chr17:76799538-76799937(-)$1	399	143	168	24.2351
UGGCAUCAGGUAUUUGGGGAUGUUA	chr11:102239111-102239387(+)$1	276	159	184	24.2351
cauuucuaacaaguucucaggagau	chr14:35264769-35265075(-)$1	306	20	45	21.9347
CAGCUGAAGAUGAUGAGGUGGGUUC	chr2:232577058-232577275(+)$1	217	151	176	23.0598
gaaggagagguaaaagaaAAUUUGG	chr9:131456203-131456422(+)$1	219	109	134	21.6689
CGGGGGGAUAGACUCCCACCUCCUG	chr17:7139376-7139690(-)$1	314	126	151	24.2351
GAAGAGGUAAGCAGCUCAUCCUGUU	chr7:127975764-127976084(-)$1	320	178	203	24.3785
GGAGAAGGAAAUGAAAACAACAUCU	chr14:23549498-23549762(-)$1	264	115	140	23.5017
GGCCACUGUAACCAAGAAAGUGGCU	chr6:26056034-26056338(-)$1	304	170	195	24.2351
AGCCCAGCAAAAGGUAAUCUUGGGU	chr17:38555191-38555443(-)$1	252	139	164	23.0808
UAGAUCUGCUUAUUAUCCUGAAGAU	chrX:132833822-132834060(-)$1	238	42	67	21.5553
AACACGGGGAAGAAAAUGCUGAGGC	chr8:103300282-103300596(-)$1	314	157	182	22.3750
GGCGGCCAAGCCCAAGAAGGCGGCC	chr1:24979319-24979615(+)$1	296	101	126	24.3678
UCCCCAUGGGCAGGAAUAGAAAUGA	chr2:242195513-242195763(-)$1	250	188	213	22.5212
CUUUCUUCAGUAGAAAAUGGAGAGA	chr16:11990471-11990743(-)$1	272	91	116	23.0358
GGAAAUGGCCAAACAGAAAGCAGCU	chr2:232325088-232325297(-)$1	209	56	81	21.9328
GAUGUAAUUAUAUUAGCUUUAUAUU	chr8:124381985-124382263(-)$1	278	231	256	24.2049
AGCCGGUCAAACUAUAUAAACUCUG	chr2:29169490-29169778(+)$1	288	168	193	19.8178
GCUGAUUAUAAACCUAAGAAAAUUA	chr20:39709724-39709986(+)$1	262	81	106	23.6613
AGCUGUCACUCCAGGCAAAAAGGCA	chr2:232326575-232326825(-)$1	250	204	229	21.5553
UCACCACUCCUAGUAAAUCUGUGAG	chr16:11931694-11931962(-)$1	268	233	258	24.3004

#DB
))))(((...........)))((((	chr5:151183345-151183603(+)$1	1	129	154	24.1545
(.(((((...........)))))..	chr15:44843545-44843824(+)$1	1	237	262	23.6273
.((((((............))))))	chr20:17934561-17934815(-)$1	1	22	47	21.9536
.(.((((.............)))).	chr16:50655448-50655720(+)$1	1	154	179	23.3564
(((.(((...........)))))))	chr10:7840853-7841161(+)$1	1	55	80	24.0998
...((((..............))))	chr19:5600026-5600360(-)$1	1	94	119	21.0373
..(((((...........)))))..	chr2:27607787-27608056(-)$1	1	155	180	23.4298
(((..((.............))..)	chr2:232325130-232325372(-)$1	1	131	156	21.9328
(((((.(.............)))))	chr2:172582023-172582307(+)$1	1	212	237	24.0836
(((.(((...........))).)))	chr11:35684881-35685240(+)$1	1	74	99	24.3678
(((((((..............))))	chr14:73566274-73566563(+)$1	1	76	101	22.4092
(.(((((..............))))	chr2:110303627-110303911(-)$1	1	125	150	21.6882
((.((((.............)))).	chr19:8531015-8531242(+)$1	1	173	198	23.1651
((((((.............))))))	chr6:129962858-129963151(-)$1	1	117	142	22.5191
.((((((...........)))))).	chr6:4032681-4033029(+)$1	1	85	110	22.0483
..(((((...........)))))((	chr14:23528446-23528709(-)$1	1	26	51	21.2121
((((((............)))).))	chr1:46072982-46073280(+)$1	1	260	285	22.1846
....(((.............)))..	chr14:102551125-102551383(-)$1	1	56	81	21.2583
(((((((...........)))))))	chr6:4032038-4032321(+)$1	1	204	229	24.2351
..(((((...........)))))))	chr14:39648288-39648550(+)$1	1	24	49	22.2442
...(((............)))....	chr9:139734670-139734893(+)$1	1	112	137	20.0699
(((((((................))	chr6:168352699-168352968(+)$1	1	39	64	20.5092
(((((((...........)))))))	chr17:76183350-76183616(+)$1	1	155	180	24.2351
(.(((((............))))).	chr17:73664511-73664806(+)$1	1	232	257	23.3140
.(.((((............))))).	chr8:623433-623751(-)$1	1	272	297	22.8509
..(((((...........)))))))	chr4:113568222-113568559(+)$1	1	278	303	23.5442
((..(((...........)))))))	chr2:190339838-190340189(+)$1	1	151	176	24.0503
.((((((.............)))))	chr1:205689657-205689881(-)$1	1	52	77	23.3171
(((((((...........)))))))	chr14:21679866-21680096(-)$1	1	122	147	21.8959
(((((((...........)))))))	chr16:87799276-87799610(-)$1	1	195	220	24.2351
(((.((.............)).)))	chr20:47740903-47741179(-)$1	1	185	210	22.3713
(((((((...........))).)))	chr2:242194884-242195096(-)$1	1	185	210	24.0431
.((((((...........)))))).	chrX:70517581-70517859(+)$1	1	122	147	23.3818
(((((((...........))).)))	chr3:142735581-142735803(+)$1	1	124	149	23.5958
(((((((...........)))).))	chr15:44063286-44063547(+)$1	1	185	210	22.3741
(((((((.............)))))	chr12:95879553-95879793(+)$1	1	52	77	22.3209
(((((((..............))).	chr19:15366774-15367122(-)$1	1	319	344	21.7416
(((((((...........)))))))	chr20:34317289-34317550(-)$1	1	171	196	21.8959
(((((((...........)))))))	chr2:201726338-201726590(-)$1	1	32	57	23.9985
((((.((...........)).))))	chr6:7581094-7581367(+)$1	1	89	114	21.9441
(((((((...........)))...)	chr19:6381269-6381568(-)$1	1	213	238	23.9837
((.((((.............)))).	chr6:7579630-7579996(+)$1	1	70	95	22.7358
.((.(((...........))).)).	chr3:52724589-52724820(+)$1	1	181	206	23.5627
.(((((............)))))..	chr12:58112685-58113014(+)$1	1	188	213	22.4106
(((((((...........)))))))	chr17:76799538-76799937(-)$1	1	143	168	24.2351
(((((((...........)))))))	chr11:102239111-102239387(+)$1	1	159	184	24.2351
(((((((............))))))	chr14:35264769-35265075(-)$1	1	20	45	21.9347
.((((.(...........).)))))	chr2:232577058-232577275(+)$1	1	151	176	23.0598
(..(((..............)))..	chr9:131456203-131456422(+)$1	1	109	134	21.6689
(((((((...........)))))))	chr17:7139376-7139690(-)$1	1	126	151	24.2351
(((.(((............))).))	chr7:127975764-127976084(-)$1	1	178	203	24.3785
(((((.(.............).)))	chr14:23549498-23549762(-)$1	1	115	140	23.5017
(((((((...........)))))))	chr6:26056034-26056338(-)$1	1	170	195	24.2351
.((((((............))))))	chr17:38555191-38555443(-)$1	1	139	164	23.0808
.((((((..............))))	chrX:132833822-132834060(-)$1	1	42	67	21.5553
..(.(((...........))).)..	chr8:103300282-103300596(-)$1	1	157	182	22.3750
(((.(((...........))).)))	chr1:24979319-24979615(+)$1	1	101	126	24.3678
(((.(((..............))).	chr2:242195513-242195763(-)$1	1	188	213	22.5212
((((((............)))))))	chr16:11990471-11990743(-)$1	1	91	116	23.0358
(((..((.............))..)	chr2:232325088-232325297(-)$1	1	56	81	21.9328
(((((((...........)))))))	chr8:124381985-124382263(-)$1	1	231	256	24.2049
((((((................)))	chr2:29169490-29169778(+)$1	1	168	193	19.8178
..(((((.............)))))	chr20:39709724-39709986(+)$1	1	81	106	23.6613
.((((((..............))))	chr2:232326575-232326825(-)$1	1	204	229	21.5553
((..(((.............))).)	chr16:11931694-11931962(-)$1	1	233	258	24.3004

#PSSM
g : 0.20	[ : 0.10	d : 0.10	c : 0.09	e : 0.07	! : 0.06	i : 0.06	h : 0.06	f : 0.04	: : 0.03	& : 0.03	# : 0.01	) : 0.01	+ : 0.01	" : 0.01	$ : 0.01	b : 0.01	' : 0.01	= : 0.01	
g : 0.20	f : 0.15	d : 0.12	e : 0.07	! : 0.06	i : 0.06	c : 0.06	h : 0.06	[ : 0.04	a : 0.03	# : 0.01	: : 0.01	) : 0.01	& : 0.01	+ : 0.01	b : 0.01	' : 0.01	= : 0.01	
e : 0.20	g : 0.18	f : 0.13	d : 0.12	[ : 0.06	h : 0.06	i : 0.04	c : 0.04	! : 0.04	# : 0.01	) : 0.01	+ : 0.01	b : 0.01	a : 0.01	= : 0.01	
e : 0.18	d : 0.16	g : 0.15	f : 0.13	[ : 0.12	! : 0.06	h : 0.06	i : 0.04	c : 0.03	) : 0.01	= : 0.01	
c : 0.26	e : 0.15	f : 0.13	g : 0.13	d : 0.12	h : 0.06	i : 0.04	! : 0.03	b : 0.01	[ : 0.01	= : 0.01	
c : 0.26	e : 0.13	f : 0.13	g : 0.13	d : 0.10	b : 0.06	h : 0.06	[ : 0.04	i : 0.03	= : 0.01	
c : 0.23	g : 0.13	e : 0.12	f : 0.10	d : 0.09	u : 0.06	h : 0.06	b : 0.04	a : 0.04	v : 0.03	i : 0.01	w : 0.01	= : 0.01	y : 0.01	
t : 0.47	v : 0.21	u : 0.15	w : 0.12	y : 0.03	
t : 0.47	v : 0.21	u : 0.15	w : 0.12	y : 0.03	
t : 0.47	v : 0.21	u : 0.15	w : 0.12	y : 0.03	
t : 0.47	v : 0.21	u : 0.15	w : 0.12	y : 0.03	
t : 0.47	v : 0.21	u : 0.15	w : 0.12	y : 0.03	
t : 0.47	v : 0.21	u : 0.15	w : 0.12	y : 0.03	
t : 0.47	v : 0.21	u : 0.15	w : 0.12	y : 0.03	
t : 0.47	v : 0.21	u : 0.15	w : 0.12	y : 0.03	
t : 0.47	v : 0.21	u : 0.15	w : 0.12	y : 0.03	
t : 0.47	v : 0.21	u : 0.15	w : 0.12	y : 0.03	
t : 0.47	v : 0.21	u : 0.15	w : 0.12	y : 0.03	
v : 0.21	c : 0.16	w : 0.12	g : 0.10	e : 0.09	u : 0.09	f : 0.03	d : 0.03	y : 0.03	h : 0.03	i : 0.03	b : 0.01	a : 0.01	= : 0.01	
c : 0.18	v : 0.18	w : 0.12	e : 0.10	g : 0.10	f : 0.07	d : 0.04	h : 0.04	y : 0.03	b : 0.03	i : 0.03	] : 0.01	= : 0.01	
c : 0.23	e : 0.12	d : 0.10	w : 0.10	g : 0.10	f : 0.09	h : 0.06	b : 0.04	a : 0.03	y : 0.03	i : 0.03	] : 0.01	= : 0.01	
d : 0.15	e : 0.15	f : 0.13	] : 0.12	g : 0.12	c : 0.09	h : 0.06	i : 0.04	b : 0.03	y : 0.03	> : 0.01	3 : 0.01	= : 0.01	
e : 0.18	f : 0.15	d : 0.13	c : 0.12	g : 0.12	h : 0.06	i : 0.04	] : 0.04	2 : 0.03	> : 0.01	y : 0.01	3 : 0.01	b : 0.01	a : 0.01	= : 0.01	
g : 0.16	d : 0.15	f : 0.15	e : 0.10	c : 0.09	2 : 0.06	h : 0.06	3 : 0.04	i : 0.04	8 : 0.01	> : 0.01	a : 0.01	b : 0.01	6 : 0.01	= : 0.01	] : 0.01	
g : 0.16	d : 0.12	f : 0.12	e : 0.10	] : 0.09	i : 0.06	c : 0.06	h : 0.06	3 : 0.04	2 : 0.04	7 : 0.01	8 : 0.01	> : 0.01	4 : 0.01	b : 0.01	6 : 0.01	= : 0.01	

#score	1487.2839249263343
#seq	65
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_CDS_m1_run2.txt

#BEAR
#eeeee####cccqqqqqqqqccc22eeeeed	chr1:40530045-40530270(+)$1	225	56	88	16.5358
eeee"""bb[cccqqqqqqqqccc]bb66666	chr17:1554868-1555099(-)$1	231	2	34	13.8234
eeee[a[eeeeerrrrrrrrreeeee333a]e	chr17:27011579-27011827(+)$1	248	20	52	10.9012
ee[dddd[bb[bbqqqqqqqqbb]bbddddee	chr9:71862966-71863231(+)$1	265	15	47	15.4199
ddd"""a[eeeeeqqqqqqqqeeeeeadddde	chr7:2406074-2406301(+)$1	227	159	191	15.0317
eeeeeddddddddqqqqqqqqdddd:dddd[c	chr10:103912047-103912319(+)$1	272	101	133	14.3619
==========wwwwwwwwwwwwww========	chr15:28366391-28366636(-)$1	245	21	53	12.8133
iiggggggg[cccqqqqqqqqcccggggggg8	chr12:132528621-132528857(+)$1	236	38	70	16.7026
!!ccc!!abb[bbqqqqqqqqbbbb]a22ccc	chr17:1582903-1583165(-)$1	262	66	98	16.1041
:ffffff[bb[bbqqqqqqqqbb]bb]fffff	chrX:53576182-53576418(-)$1	236	5	37	14.0700
eeeee[a[ddddrrrrrrrrrdddd]a]eeee	chr21:34925940-34926197(+)$1	257	43	75	11.8183
eeeeiiiiiiiiiqqqqqqqqiiiiiiiii::	chrX:153588098-153588322(-)$1	224	108	140	15.1541
==========[bbrrrrrrrrrbb========	chr11:4127214-4127475(+)$1	261	49	81	12.6695
bb"""ccc[a[bbqqqqqqqqbba]ccc]bb=	chr5:138260141-138260433(+)$1	292	129	161	15.6523
========"""bbqqqqqqqqbb4444=====	chr1:19447753-19447995(-)$1	242	126	158	17.4467
fffff[bb!!cccqqqqqqqqcccbb]fffff	chr8:48830776-48831022(-)$1	246	169	201	15.4095
fffbb[gggggggqqqqqqqqggggggg]bb]	chrX:53246271-53246501(-)$1	230	186	218	15.1304
ciiiiiiiii[bbqqqqqqqqbbiiiiiiiii	chr17:40048456-40048687(-)$1	231	76	108	17.4422
hhh:iiiiiiiiiqqqqqqqqiiiiiiiii::	chr11:65827152-65827430(+)$1	278	67	99	13.6818
bb!!bb"""ddddqqqqqqqqddddbb333bb	chr14:102460472-102460715(+)$1	243	122	154	15.2695
dd[ccc[bb!!bbqqqqqqqqbb22bbccc]d	chr17:73824852-73825109(-)$1	257	19	51	15.4618
ffffff####cccqqqqqqqqccc333fffff	chr2:48031948-48032211(+)$1	263	164	196	16.3432
!!bb[ddddddddqqqqqqqqdddd333dddd	chr8:48879914-48880139(+)$1	225	82	114	15.5464
eeee"""ffffffqqqqqqqqffffff]eeee	chr11:65348610-65348866(+)$1	256	212	244	15.3128
hccc[eeeeecccqqqqqqqqccc22eeeee]	chr10:75860713-75860955(+)$1	242	174	206	16.0493
d"""eeeeeddddqqqqqqqqdddd]eeeee3	chr9:139360418-139360661(-)$1	243	50	82	15.9470
eee[ddddbb[bbqqqqqqqqbb]bb]dddde	chr19:59056222-59056471(+)$1	249	189	221	15.4270
hhhhh[dddd[bbqqqqqqqqbbddddhhhhh	chr17:42942273-42942535(-)$1	262	52	84	14.4708
cc!!bb[ffffffqqqqqqqqffffffbb]cc	chr14:102452831-102453061(+)$1	230	76	108	14.0503
:eeeee"""ddddqqqqqqqqdddd]eeeee:	chr19:15375148-15375416(-)$1	268	88	120	14.9201
cc"""hhhhhhhhqqqqqqqqhhhhhhhh333	chr9:139717882-139718192(+)$1	310	13	45	13.9658
dddccc!!bb[bbqqqqqqqqbb]bb22ccc3	chr12:116714764-116715052(-)$1	288	99	131	16.1320
dddcccccc[cccqqqqqqqqccc]ccc333c	chr12:56532153-56532382(+)$1	229	170	202	16.5414
:::ccc"""ddddqqqqqqqqdddd333cccD	chr11:61080946-61081193(-)$1	247	5	37	13.0434
h[ccc!!a[ddddrrrrrrrrrdddda]ccc]	chr8:48873654-48873873(+)$1	219	158	190	11.9055
c"""dddd!!cccqqqqqqqqccc333dddd3	chr14:64908993-64909224(+)$1	231	75	107	16.7003
2ccc]ddddddddqqqqqqqqdddd:ffffff	chr7:138264167-138264378(+)$1	211	51	83	13.6375
hhhhhhhh[ddddqqqqqqqqddddhhhhhhh	chr7:158449172-158449427(-)$1	255	23	55	14.1794
[cccdddd[acccqqqqqqqqccc]a]dddd]	chr2:96950215-96950420(-)$1	205	83	115	16.4810
hhhhhhgggggggqqqqqqqqggggggg333h	chr8:48719597-48719814(-)$1	217	97	129	15.2424
fffff!!ccc[bbqqqqqqqqbb]ccc4444f	chr10:71129234-71129472(+)$1	238	1	33	16.1409
f[ccc[a!!ddddqqqqqqqqdddd22a22cc	chr19:42407758-42408017(+)$1	259	141	173	16.2196
eeeee[ccc[cccqqqqqqqqcccccceeeee	chr21:33719312-33719614(-)$1	302	206	238	16.7152
[dddd[eeeeebbqqqqqqqqbb]eeeeeddd	chr12:56993670-56993953(-)$1	283	126	158	15.4023
[ffffff"""cccqqqqqqqqccc]ffffff]	chr5:71493026-71493286(+)$1	260	209	241	16.0834
b[eeeee!!cccrrrrrrrrrccc]eeeee]b	chrX:153220270-153220506(-)$1	236	31	63	11.3463
===========bbrrrrrrrrrbb]=======	chr7:98592232-98592462(+)$1	230	116	148	12.5629
dddddd"""ddddqqqqqqqqdddd]dddd::	chr15:91020863-91021113(+)$1	250	195	227	14.2652
ee!!eeeeeddddqqqqqqqqdddd22eeeee	chr17:42940030-42940320(-)$1	290	224	256	15.9879
d!!hhhhhhhh[aqqqqqqqqa]hhhhhhhh3	chr2:15448302-15448536(-)$1	234	36	68	13.9752
ddd[iiiiiiiiiqqqqqqqqiiiiiiiiidd	chr11:65831071-65831301(+)$1	230	147	179	16.6543
!a[ddddffffffqqqqqqqqffffff]dddd	chr19:19115044-19115322(-)$1	278	112	144	14.4461
iiiiiiiiiwwwwwwwwwwwwwwiiiiiiiii	chr20:62626301-62626523(+)$1	222	57	89	12.4969
eeee[a"""ddddrrrrrrrrrdddd]a]eee	chr9:134353043-134353327(+)$1	284	187	219	11.9610
[ffffff[bb[bbqqqqqqqqbb]bbffffff	chrX:153219083-153219319(-)$1	236	102	134	14.9062
eeeee!!ffffffqqqqqqqqffffff]eeee	chr4:2906481-2906743(+)$1	262	93	125	15.3988
ddgggggggwwwwwwwwwwwwwwgggggggii	chr1:65334984-65335224(-)$1	240	124	156	11.8226
dddd####eeeeeqqqqqqqqeeeee22dddd	chr12:6701458-6701668(-)$1	210	134	166	14.8223
dd!!eeeeeddddqqqqqqqqdddd]eeeee2	chr11:71724639-71724915(-)$1	276	20	52	15.9132

#otherMatches

#Seq PSSM
UAGUUGGAGAGGUCCUGAGUCACUGACAGCUU	chr1:40530045-40530270(+)$1	225	56	88	16.5358
CCCCUUUGUCUCCAGAUUGCAGGAUACCUAUA	chr17:1554868-1555099(-)$1	231	2	34	13.8234
UCAGGCCUGUAGUCGAAAGCUCUACAAUUGGU	chr17:27011579-27011827(+)$1	248	20	52	10.9012
GGCGCGGACUAUCUGAGUUGCGACAGCCGCCU	chr9:71862966-71863231(+)$1	265	15	47	15.4199
GCCUCAGUGAUGGCAAACGCCCCGUCCGGUCC	chr7:2406074-2406301(+)$1	227	159	191	15.0317
GACGCGUAUUGCCUGGAGGAUGGCGGACGCCG	chr10:103912047-103912319(+)$1	272	101	133	14.3619
CAUAUCAGAUUCUAAAUUUUGUCUGUUUGAUG	chr15:28366391-28366636(-)$1	245	21	53	12.8133
ACUCGGGGGCUGCUCUGAGCUGCACUCCUGAU	chr12:132528621-132528857(+)$1	236	38	70	16.7026
UUUCAGAGCCAGGAACCAUUGCCGGAUGAUGA	chr17:1582903-1583165(-)$1	262	66	98	16.1041
UGGACCACGAAGCCCUUUCUUGUCUCUUGGUC	chrX:53576182-53576418(-)$1	236	5	37	14.0700
GUUAUGAAAGGAAUUAAUCUAUCCUCUGGUGA	chr21:34925940-34926197(+)$1	257	43	75	11.8183
GGAGGGCCGCACGUCAAGGCCCGUGUGGCCAA	chrX:153588098-153588322(-)$1	224	108	140	15.1541
UUAUUUUUGUAGGCUCAGAUCACCAUGAAAGU	chr11:4127214-4127475(+)$1	261	49	81	12.6695
GCACAGCUGGUGCAAUUCGAGGCCGGGCAGCC	chr5:138260141-138260433(+)$1	292	129	161	15.6523
CUGCUGCAACUGCUCUCCUGUGCUCUGUGCGG	chr1:19447753-19447995(-)$1	242	126	158	17.4467
CAAAGAACCUUUCAUCAGUAAGAAGUCCUUUG	chr8:48830776-48831022(-)$1	246	169	201	15.4095
CCCCUUCUUCGAACUUAGAGCUUUGAGGUGGA	chrX:53246271-53246501(-)$1	230	186	218	15.1304
CGGAGGUAGAUGUGCUCAUCAACUUUGCCUCU	chr17:40048456-40048687(-)$1	231	76	108	17.4422
UCUCGAGAACACGCAUUACUAUGUGUUUUCCA	chr11:65827152-65827430(+)$1	278	67	99	13.6818
UGUUGCCCUGGAAGAGUCGUAUUCUGCUGUCA	chr14:102460472-102460715(+)$1	243	122	154	15.2695
CAGCAGAGCCCUGACUCUCCCCGCAGCCUGGU	chr17:73824852-73825109(-)$1	257	19	51	15.4618
CACCAAUUGAUAGAGUGUUUACUAGACUUGGU	chr2:48031948-48032211(+)$1	263	164	196	16.3432
AAUGAUCUCGUUGACAAGGUCCAGCCUGGGGA	chr8:48879914-48880139(+)$1	225	82	114	15.5464
CGGAAACCUCACCAGAGAUGAGGUGAGCUUUG	chr11:65348610-65348866(+)$1	256	212	244	15.3128
AGUAAAGAAAGUUAAUUACAGAACAGUUUCUA	chr10:75860713-75860955(+)$1	242	174	206	16.0493
GCCCGUUUGCUUUGUUUUCUAAGAGUCAGAUU	chr9:139360418-139360661(-)$1	243	50	82	15.9470
ccccgccgccgccAACAGCUCGGGGGACGGCG	chr19:59056222-59056471(+)$1	249	189	221	15.4270
CCAUGCUCAGGCUCUCACUACAGCUGACAUGG	chr17:42942273-42942535(-)$1	262	52	84	14.4708
CGAGAGCGUUCGUACCUAUGAACGGACCUGCG	chr14:102452831-102453061(+)$1	230	76	108	14.0503
AAGAAGCACGCCGCCUACGCCUGGCCCUUCUA	chr19:15375148-15375416(-)$1	268	88	120	14.9201
UCUCCUUGUAGUUGCUCUUAAAGCUGCAGCUU	chr9:139717882-139718192(+)$1	310	13	45	13.9658
CGGGCUCGCGGAGGAUCAUGACUGCGGCAGCG	chr12:116714764-116715052(-)$1	288	99	131	16.1320
UCUUCCACCUUCCUCCGGUUUGGAUGGUCCUG	chr12:56532153-56532382(+)$1	229	170	202	16.5414
CUCUCUGUAGGUCUGUUGAGCGACCGUAAGAA	chr11:61080946-61081193(-)$1	247	5	37	13.0434
CCGCCCCGUCUGCCCUCUCGCCGCAGCUGGCA	chr8:48873654-48873873(+)$1	219	158	190	11.9055
GGUGCUUGUUGCCACUGUCAGGGCUCUCAAGA	chr14:64908993-64909224(+)$1	231	75	107	16.7003
AAGUGCCCCAAAGUAUUCCAUCUUUCUUGUCA	chr7:138264167-138264378(+)$1	211	51	83	13.6375
UUUUCAGCUGUGGUGUGAUUUCCACGCUGAGA	chr7:158449172-158449427(-)$1	255	23	55	14.1794
CCUCUGCCCGCCAGGUAUACAUGGACUGGUAC	chr2:96950215-96950420(-)$1	205	83	115	16.4810
UAGACAGUGCCCGGAAGCAGGUGGGUACUCGU	chr8:48719597-48719814(-)$1	217	97	129	15.2424
ACAUUGAUCUGGUGGAAGGAGACGAGGGGAGG	chr10:71129234-71129472(+)$1	238	1	33	16.1409
UCGGCAGAGCAGCGACCCUAUGCUGAGCGAGU	chr19:42407758-42408017(+)$1	259	141	173	16.2196
GCACCCACUUGCUGUGGUUCGAGCAGUGGUGC	chr21:33719312-33719614(-)$1	302	206	238	16.7152
GCCGGAGCGCAGCCCAGGUGUGCUUGUGCCUG	chr12:56993670-56993953(-)$1	283	126	158	15.4023
GUCAUUGAAAAACCACCAGCAGUUCCAGUGAG	chr5:71493026-71493286(+)$1	260	209	241	16.0834
GAGCGUCGGCGCCAACCACCAGCGAGAUGCCC	chrX:153220270-153220506(-)$1	236	31	63	11.3463
UGGAGAAUGUGUCCAACGUCUCGACCAUGUUC	chr7:98592232-98592462(+)$1	230	116	148	12.5629
UGACCCUGUGGAUAUUUACAAAUCUUGGGUUA	chr15:91020863-91021113(+)$1	250	195	227	14.2652
GGAUCUCUGUGGCCAGGUACUGCCAACCAGAG	chr17:42940030-42940320(-)$1	290	224	256	15.9879
AAUUCUAACAUGUUCCCUCCUAGGUGUUAGAU	chr2:15448302-15448536(-)$1	234	36	68	13.9752
GCUGAGAGGGGAGGACCUUCACUUCCCUUUGG	chr11:65831071-65831301(+)$1	230	147	179	16.6543
augaggaugggggagaggaggCCCCCGCUCCU	chr19:19115044-19115322(-)$1	278	112	144	14.4461
GAGAAGCUGACCCCUGUUCCUGACAGUUUCUU	chr20:62626301-62626523(+)$1	222	57	89	12.4969
CUUCCCGAAGCCUCCAGUAAAAAGGCAGAGAA	chr9:134353043-134353327(+)$1	284	187	219	11.9610
CCCACCUGCUGCCAGCGAUCAGGGAGAGGUGG	chrX:153219083-153219319(-)$1	236	102	134	14.9062
GUCACAGGUUACUCCUUUGCUAGUGACGGUGA	chr4:2906481-2906743(+)$1	262	93	125	15.3988
GAUGGACAUGAUAUUGAGAACGAGUGUCUAGG	chr1:65334984-65335224(-)$1	240	124	156	11.8226
ACUCCAUUUAGACAUCUGCCAGUCUGCAGAGU	chr12:6701458-6701668(-)$1	210	134	166	14.8223
AGAGGCUGAGAGGAAAAAUAGCCUCAUCAGCA	chr11:71724639-71724915(-)$1	276	20	52	15.9132

#DB
.(((((....(((........)))..))))))	chr1:40530045-40530270(+)$1	1	56	88	16.5358
((((...((.(((........))).)).....	chr17:1554868-1555099(-)$1	1	2	34	13.8234
((((.(.(((((.........)))))...).)	chr17:27011579-27011827(+)$1	1	20	52	10.9012
((.((((.((.((........)).))))))))	chr9:71862966-71863231(+)$1	1	15	47	15.4199
(((...(.(((((........)))))))))))	chr7:2406074-2406301(+)$1	1	159	191	15.0317
)))))))))((((........)))).((((.(	chr10:103912047-103912319(+)$1	1	101	133	14.3619
((((((((((..............))))))))	chr15:28366391-28366636(-)$1	1	21	53	12.8133
(((((((((.(((........)))))))))).	chr12:132528621-132528857(+)$1	1	38	70	16.7026
..(((..(((.((........)))).)..)))	chr17:1582903-1583165(-)$1	1	66	98	16.1041
.((((((.((.((........)).)).)))))	chrX:53576182-53576418(-)$1	1	5	37	14.0700
(((((.(.((((.........)))).).))))	chr21:34925940-34926197(+)$1	1	43	75	11.8183
))))(((((((((........)))))))))..	chrX:153588098-153588322(-)$1	1	108	140	15.1541
((((((((((.((.........))))))))))	chr11:4127214-4127475(+)$1	1	49	81	12.6695
((...(((.(.((........))).))).)))	chr5:138260141-138260433(+)$1	1	129	161	15.6523
((((((((...((........))....)))))	chr1:19447753-19447995(-)$1	1	126	158	17.4467
(((((.((..(((........))))).)))))	chr8:48830776-48831022(-)$1	1	169	201	15.4095
(((((.(((((((........))))))).)).	chrX:53246271-53246501(-)$1	1	186	218	15.1304
)(((((((((.((........)))))))))))	chr17:40048456-40048687(-)$1	1	76	108	17.4422
))).(((((((((........)))))))))..	chr11:65827152-65827430(+)$1	1	67	99	13.6818
((..((...((((........))))))...))	chr14:102460472-102460715(+)$1	1	122	154	15.2695
((.(((.((..((........))..))))).)	chr17:73824852-73825109(-)$1	1	19	51	15.4618
((((((....(((........)))...)))))	chr2:48031948-48032211(+)$1	1	164	196	16.3432
..((.((((((((........))))...))))	chr8:48879914-48880139(+)$1	1	82	114	15.5464
((((...((((((........)))))).))))	chr11:65348610-65348866(+)$1	1	212	244	15.3128
((((.((((((((........)))..))))).	chr10:75860713-75860955(+)$1	1	174	206	16.0493
(...(((((((((........)))).))))).	chr9:139360418-139360661(-)$1	1	50	82	15.9470
(((.((((((.((........)).)).)))))	chr19:59056222-59056471(+)$1	1	189	221	15.4270
(((((.((((.((........)))))))))))	chr17:42942273-42942535(-)$1	1	52	84	14.4708
((..((.((((((........)))))))).))	chr14:102452831-102453061(+)$1	1	76	108	14.0503
.(((((...((((........)))).))))).	chr19:15375148-15375416(-)$1	1	88	120	14.9201
((...((((((((........))))))))...	chr9:139717882-139718192(+)$1	1	13	45	13.9658
((((((..((.((........)).))..))).	chr12:116714764-116715052(-)$1	1	99	131	16.1320
(((((((((.(((........))).)))...)	chr12:56532153-56532382(+)$1	1	170	202	16.5414
...(((...((((........))))...)))(	chr11:61080946-61081193(-)$1	1	5	37	13.0434
(.(((..(.((((.........))))).))).	chr8:48873654-48873873(+)$1	1	158	190	11.9055
(...((((..(((........)))...)))).	chr14:64908993-64909224(+)$1	1	75	107	16.7003
.))).))))((((........)))).((((((	chr7:138264167-138264378(+)$1	1	51	83	13.6375
((((((((.((((........)))))))))))	chr7:158449172-158449427(-)$1	1	23	55	14.1794
.(((((((.((((........))).).)))).	chr2:96950215-96950420(-)$1	1	83	115	16.4810
(((((((((((((........)))))))...)	chr8:48719597-48719814(-)$1	1	97	129	15.2424
(((((..(((.((........)).)))....)	chr10:71129234-71129472(+)$1	1	1	33	16.1409
(.(((.(..((((........))))..)..))	chr19:42407758-42408017(+)$1	1	141	173	16.2196
(((((.(((.(((........)))))))))))	chr21:33719312-33719614(-)$1	1	206	238	16.7152
.((((.(((((((........)).))))))))	chr12:56993670-56993953(-)$1	1	126	158	15.4023
.((((((...(((........))).)))))).	chr5:71493026-71493286(+)$1	1	209	241	16.0834
(.(((((..(((.........))).))))).)	chrX:153220270-153220506(-)$1	1	31	63	11.3463
(((((((((((((.........)).)))))))	chr7:98592232-98592462(+)$1	1	116	148	12.5629
))((((...((((........)))).))))..	chr15:91020863-91021113(+)$1	1	195	227	14.2652
((..(((((((((........))))..)))))	chr17:42940030-42940320(-)$1	1	224	256	15.9879
(..((((((((.(........).)))))))).	chr2:15448302-15448536(-)$1	1	36	68	13.9752
(((.(((((((((........)))))))))))	chr11:65831071-65831301(+)$1	1	147	179	16.6543
.(.((((((((((........)))))).))))	chr19:19115044-19115322(-)$1	1	112	144	14.4461
(((((((((..............)))))))))	chr20:62626301-62626523(+)$1	1	57	89	12.4969
((((.(...((((.........)))).).)))	chr9:134353043-134353327(+)$1	1	187	219	11.9610
.((((((.((.((........)).))))))))	chrX:153219083-153219319(-)$1	1	102	134	14.9062
(((((..((((((........)))))).))))	chr4:2906481-2906743(+)$1	1	93	125	15.3988
))(((((((..............)))))))((	chr1:65334984-65335224(-)$1	1	124	156	11.8226
((((....(((((........)))))..))))	chr12:6701458-6701668(-)$1	1	134	166	14.8223
((..(((((((((........)))).))))).	chr11:71724639-71724915(-)$1	1	20	52	15.9132

#PSSM
e : 0.20	d : 0.18	h : 0.10	f : 0.08	= : 0.06	c : 0.06	[ : 0.06	! : 0.05	: : 0.05	b : 0.05	i : 0.03	# : 0.01	2 : 0.01	
e : 0.23	d : 0.16	f : 0.11	c : 0.08	= : 0.06	h : 0.06	i : 0.05	! : 0.05	[ : 0.05	b : 0.03	" : 0.03	: : 0.01	a : 0.01	
e : 0.22	d : 0.11	f : 0.11	c : 0.10	! : 0.08	= : 0.06	" : 0.06	h : 0.06	[ : 0.05	g : 0.03	i : 0.03	b : 0.01	: : 0.01	
e : 0.20	c : 0.16	f : 0.10	d : 0.08	" : 0.08	= : 0.06	! : 0.06	h : 0.06	g : 0.03	b : 0.03	i : 0.03	[ : 0.03	: : 0.01	
e : 0.16	d : 0.11	c : 0.11	f : 0.10	" : 0.08	i : 0.08	[ : 0.06	= : 0.06	h : 0.06	b : 0.05	g : 0.03	] : 0.01	# : 0.01	
d : 0.15	e : 0.11	[ : 0.11	i : 0.08	c : 0.08	= : 0.06	! : 0.06	f : 0.06	h : 0.06	" : 0.05	a : 0.03	g : 0.03	b : 0.03	# : 0.01	
d : 0.15	" : 0.11	e : 0.10	! : 0.08	i : 0.08	= : 0.06	g : 0.06	# : 0.05	[ : 0.05	a : 0.05	f : 0.05	c : 0.05	h : 0.05	b : 0.01	
d : 0.11	e : 0.10	" : 0.10	[ : 0.08	i : 0.08	= : 0.06	g : 0.06	c : 0.06	f : 0.06	# : 0.05	b : 0.05	h : 0.05	! : 0.05	a : 0.03	
b : 0.13	e : 0.13	" : 0.11	d : 0.08	i : 0.08	g : 0.06	[ : 0.06	! : 0.06	f : 0.06	= : 0.05	c : 0.05	# : 0.03	h : 0.03	
d : 0.27	b : 0.10	e : 0.08	[ : 0.06	i : 0.06	f : 0.06	= : 0.05	! : 0.05	# : 0.03	a : 0.03	" : 0.03	g : 0.03	h : 0.03	c : 0.03	w : 0.03	
d : 0.25	c : 0.20	[ : 0.18	e : 0.06	f : 0.06	w : 0.05	i : 0.05	g : 0.03	h : 0.03	" : 0.01	! : 0.01	= : 0.01	
b : 0.25	d : 0.25	c : 0.20	f : 0.06	e : 0.05	w : 0.05	i : 0.05	g : 0.03	h : 0.01	[ : 0.01	
b : 0.25	d : 0.23	c : 0.18	f : 0.06	r : 0.05	w : 0.05	i : 0.05	e : 0.03	g : 0.03	h : 0.01	a : 0.01	
q : 0.83	r : 0.11	w : 0.05	
q : 0.83	r : 0.11	w : 0.05	
q : 0.83	r : 0.11	w : 0.05	
q : 0.83	r : 0.11	w : 0.05	
q : 0.83	r : 0.11	w : 0.05	
q : 0.83	r : 0.11	w : 0.05	
q : 0.83	r : 0.11	w : 0.05	
q : 0.83	r : 0.11	w : 0.05	
b : 0.22	d : 0.22	c : 0.20	r : 0.06	f : 0.06	e : 0.05	w : 0.05	i : 0.05	g : 0.03	h : 0.01	a : 0.01	
b : 0.25	d : 0.25	c : 0.20	f : 0.06	e : 0.05	w : 0.05	i : 0.05	g : 0.03	h : 0.01	] : 0.01	
d : 0.27	c : 0.20	] : 0.11	i : 0.08	f : 0.06	e : 0.05	b : 0.05	g : 0.05	h : 0.03	w : 0.01	a : 0.01	4 : 0.01	2 : 0.01	
d : 0.27	] : 0.11	b : 0.11	i : 0.08	e : 0.06	g : 0.06	f : 0.06	2 : 0.05	= : 0.03	3 : 0.03	h : 0.03	c : 0.03	4 : 0.01	
b : 0.15	] : 0.10	e : 0.08	i : 0.08	f : 0.08	2 : 0.06	g : 0.06	c : 0.06	3 : 0.06	= : 0.05	d : 0.05	h : 0.05	: : 0.03	4 : 0.01	a : 0.01	
e : 0.11	f : 0.11	3 : 0.08	] : 0.08	i : 0.08	d : 0.06	a : 0.06	g : 0.06	c : 0.06	2 : 0.06	b : 0.05	= : 0.05	h : 0.05	4 : 0.01	
e : 0.15	d : 0.11	f : 0.10	] : 0.08	i : 0.08	3 : 0.06	= : 0.06	g : 0.06	h : 0.06	2 : 0.05	c : 0.05	a : 0.03	6 : 0.01	b : 0.01	4 : 0.01	
e : 0.20	d : 0.16	f : 0.10	i : 0.08	3 : 0.06	= : 0.06	c : 0.06	h : 0.06	] : 0.05	g : 0.03	2 : 0.03	6 : 0.01	b : 0.01	4 : 0.01	
e : 0.20	d : 0.18	f : 0.10	c : 0.08	i : 0.08	= : 0.06	3 : 0.06	h : 0.05	g : 0.03	b : 0.03	6 : 0.01	a : 0.01	] : 0.01	4 : 0.01	2 : 0.01	
e : 0.20	d : 0.15	c : 0.10	f : 0.10	= : 0.06	] : 0.05	: : 0.05	b : 0.05	i : 0.05	h : 0.05	3 : 0.05	6 : 0.01	[ : 0.01	g : 0.01	4 : 0.01	
e : 0.16	d : 0.11	f : 0.10	c : 0.08	= : 0.08	] : 0.08	3 : 0.08	: : 0.06	i : 0.05	h : 0.05	b : 0.03	6 : 0.01	8 : 0.01	D : 0.01	2 : 0.01	

#score	873.9191574494622
#seq	59
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_transcript_m1_run2.txt

#BEAR
gggggguuuuuuuuuuuugggggg	chr16:81744426-81744670(+)$1	244	117	141	22.9529
EEddddvvvvvvvvvvvvvdddd:	chr7:128637422-128637666(-)$1	244	138	162	21.6378
::ddddvvvvvvvvvvvvvdddd:	chr12:7045315-7045572(+)$1	257	225	249	21.6815
fffeeeeettttttttttteeeee	chr6:41566839-41567157(+)$1	318	78	102	21.2783
:eeeeevvvvvvvvvvvvveeeee	chr17:7403980-7404235(+)$1	255	32	56	24.0229
ggggggtttttttttttggggggg	chr12:116429456-116429749(-)$1	293	72	96	21.4004
eee!!bbtttttttttttbb]eee	chr3:40351354-40351564(+)$1	210	123	147	21.3577
ee[cccvvvvvvvvvvvvvccc]e	chr15:75500265-75500566(+)$1	301	268	292	24.9727
fffffftttttttttttffffff]	chr5:139908001-139908304(+)$1	303	161	185	20.7788
:eeeeevvvvvvvvvvvvveeeee	chr19:14230773-14231063(-)$1	290	25	49	24.0229
c[ddddtttttttttttdddd]cc	chr2:228416672-228416934(+)$1	262	155	179	21.0766
ggggggtttttttttttggggggg	chrX:47085152-47085365(+)$1	213	95	119	21.4004
!eeeeewwwwwwwwwwwwwweeee	chr1:155141899-155142120(-)$1	221	102	126	23.0847
ddddcccuuuuuuuuuuuuccc]d	chrX:153664337-153664593(+)$1	256	153	177	22.9723
!!acccvvvvvvvvvvvvvccc]a	chr3:184025301-184025531(+)$1	230	159	183	25.0123
dd[cccvvvvvvvvvvvvvccc]d	chr1:228286330-228286560(+)$1	230	90	114	24.6401
c[eeeeeuuuuuuuuuuuueeeee	chr19:55899568-55899843(+)$1	275	241	265	23.0725
ggggggtttttttttttggggggg	chr3:33907815-33908067(+)$1	252	70	94	21.4004
c!!dddduuuuuuuuuuuudddd2	chr10:28897017-28897380(+)$1	363	205	229	22.5114
iiiiiivvvvvvvvvvvvviiiii	chr11:102269165-102269434(-)$1	269	92	116	24.4737
gggg[ccctttttttttttccc]g	chr4:83748610-83748860(-)$1	250	50	74	22.2485
fa[cccwwwwwwwwwwwwwwccc]	chr1:115260589-115260860(-)$1	271	60	84	22.9126
!!fffffftttttttttttfffff	chr9:115336916-115337295(+)$1	379	303	327	21.0824
iiiiiiiitttttttttttiiiii	chr11:62392497-62392748(-)$1	251	93	117	21.1442
!!a[cccuuuuuuuuuuuuccc]a	chr12:120649704-120649997(-)$1	293	66	90	23.5135
ggggggvvvvvvvvvvvvvggggg	chr7:138252149-138252428(+)$1	279	199	223	24.7252
$fffffftttttttttttffffff	chr12:101787773-101788037(-)$1	264	210	234	21.2061
###cccvvvvvvvvvvvvvccc55	chr16:67576722-67576981(+)$1	259	122	146	23.0088
eeeeewwwwwwwwwwwwwweeeee	chr12:120125125-120125409(-)$1	284	165	189	22.7379
d!!cccvvvvvvvvvvvvvccc22	chr6:30672915-30673205(-)$1	290	142	166	24.5252
bb[cccvvvvvvvvvvvvvccc]b	chr19:41812454-41812746(+)$1	292	48	72	24.2873
gggggguuuuuuuuuuuugggggg	chr19:15354183-15354398(-)$1	215	86	110	22.9529
::eeeeeuuuuuuuuuuuueeeee	chr11:126133430-126133682(-)$1	252	113	137	21.3756
:eeeeevvvvvvvvvvvvveeeee	chr1:202910429-202910656(-)$1	227	93	117	24.0229
fffffwwwwwwwwwwwwwwfffff	chr19:39875742-39876035(+)$1	293	32	56	21.9394
gggggccctttttttttttccc]g	chr5:133533267-133533519(-)$1	252	145	169	22.2968
cc[accctttttttttttccc]a]	chr1:8418154-8418397(-)$1	243	123	147	22.5115
[eeeeeyyyyyyyyyyyyyyyyee	chr19:49843574-49843916(+)$1	342	303	327	19.8473
!fffffftttttttttttffffff	chr20:35860681-35860894(+)$1	213	52	76	21.4708
[eeeeevvvvvvvvvvvvveeeee	chr15:90809126-90809407(+)$1	281	212	236	24.8063
eeddddvvvvvvvvvvvvvdddde	chr21:38574498-38574776(+)$1	278	147	171	24.1315
cc!!cccuuuuuuuuuuuuccc22	chr22:42263106-42263358(+)$1	252	87	111	23.0794
cccyyyyyyyyyyyyyyyycccee	chr1:150238379-150238649(-)$1	270	29	53	19.6505
gggggguuuuuuuuuuuugggggg	chr1:40538095-40538347(+)$1	252	90	114	22.9529
[cccbbvvvvvvvvvvvvvbb]cc	chr5:32229074-32229308(-)$1	234	66	90	23.7013
:eeeeevvvvvvvvvvvvveeeee	chr1:202910407-202910627(-)$1	220	64	88	24.0229
==eeeeeuuuuuuuuuuuueeeee	chr8:11695970-11696210(+)$1	240	90	114	23.0106
ggggggvvvvvvvvvvvvvggggg	chr9:114994369-114994617(-)$1	248	178	202	24.7252
eeddddyyyyyyyyyyyyyyyydd	chr3:40351239-40351495(+)$1	256	81	105	19.1548
ddd[bbvvvvvvvvvvvvvbbddd	chr19:808658-808862(+)$1	204	87	111	23.2176
eeddddvvvvvvvvvvvvvdddd]	chrX:153671361-153671612(+)$1	251	172	196	24.1423
[eeeeevvvvvvvvvvvvveeeee	chr3:49396700-49396954(-)$1	254	89	113	24.8063
:bbcccuuuuuuuuuuuuccc]bb	chr10:81070579-81070879(+)$1	300	81	105	21.3109
ccccccuuuuuuuuuuuuccc]cc	chr2:85280618-85280907(+)$1	289	13	37	23.1523
ddddddvvvvvvvvvvvvvdddd2	chr8:109247213-109247417(-)$1	204	130	154	23.8023
ccc!!bbtttttttttttbb22cc	chr20:33128550-33128819(+)$1	269	237	261	20.6794
eeee[ccctttttttttttccc]e	chr4:83748569-83748810(-)$1	241	102	126	22.1587
###cccwwwwwwwwwwwwwwccc2	chr7:107399066-107399369(+)$1	303	64	88	22.7094
ddd:cccuuuuuuuuuuuuccc::	chr11:118770726-118771008(-)$1	282	144	168	20.1504
ffffffvvvvvvvvvvvvvfffff	chr1:47746218-47746492(-)$1	274	87	111	23.7516
ffffffuuuuuuuuuuuuffffff	chr5:72208307-72208571(+)$1	264	35	59	22.0638
::dddduuuuuuuuuuuuddddcc	chr12:124839883-124840218(-)$1	335	115	139	20.7888
ggg[bbvvvvvvvvvvvvvbb]gg	chr7:72416681-72416936(+)$1	255	69	93	23.8749
::ddddwwwwwwwwwwwwwwdddd	chr19:49468588-49468808(+)$1	220	189	213	20.7296
[cccbbvvvvvvvvvvvvvbb]cc	chr5:32229108-32229385(-)$1	277	143	167	23.7013
:eeeeeuuuuuuuuuuuueeeee:	chr2:27263855-27264124(+)$1	269	243	267	21.3613
b[ddddvvvvvvvvvvvvvdddd2	chr6:34212962-34213165(+)$1	203	164	188	23.9506
Ceeeeevvvvvvvvvvvvveeeee	chr2:74275281-74275560(+)$1	279	7	31	23.8529
===[bbwwwwwwwwwwwwwwbb]=	chr16:24226300-24226537(+)$1	237	23	47	21.9802

#otherMatches

#Seq PSSM
CAUGCAUGCCCGCCUCUCUGCAUG	chr16:81744426-81744670(+)$1	244	117	141	22.9529
AUGAAGUUAUUCAUGGCAUCUUCA	chr7:128637422-128637666(-)$1	244	138	162	21.6378
AUGAGGUUUCCUUAUUCAUCCUCU	chr12:7045315-7045572(+)$1	257	225	249	21.6815
UCCUCAGACCCUCCCCACAUCUGA	chr6:41566839-41567157(+)$1	318	78	102	21.2783
AGCCGGCCAUCCUAAAGCCCCGGC	chr17:7403980-7404235(+)$1	255	32	56	24.0229
GCCCCAGCCAGCAAUAGUGGGGCA	chr12:116429456-116429749(-)$1	293	72	96	21.4004
CCGCCGCCUCCCUCCCUUGCCCGG	chr3:40351354-40351564(+)$1	210	123	147	21.3577
UGUGGCCUccccugccccugcucc	chr15:75500265-75500566(+)$1	301	268	292	24.9727
GGAGGAACCUUCUCACCUUCUCCU	chr5:139908001-139908304(+)$1	303	161	185	20.7788
CUUGUGUUCUUUUCGUCUUCAUAA	chr19:14230773-14231063(-)$1	290	25	49	24.0229
CCAAUGGUAAGAUCUAACAUUUGG	chr2:228416672-228416934(+)$1	262	155	179	21.0766
CUUGUCUUUGAGUACCUGGUAAGG	chrX:47085152-47085365(+)$1	213	95	119	21.4004
UGGUCUGUACUACAUCAACAAGAU	chr1:155141899-155142120(-)$1	221	102	126	23.0847
AAGGGACAUGAAUUCUAGGGUCUC	chrX:153664337-153664593(+)$1	256	153	177	22.9723
GACCCAAACAACCUCUUCAUGGUG	chr3:184025301-184025531(+)$1	230	159	183	25.0123
GCCGCCCUACCCACCUUCAGGCAG	chr1:228286330-228286560(+)$1	230	90	114	24.6401
GCCAUGUCAUCAAAACUCUGCAUG	chr19:55899568-55899843(+)$1	275	241	265	23.0725
UAUGGCCAGUAUAAUAUGCCAUAU	chr3:33907815-33908067(+)$1	252	70	94	21.4004
UCCCUGUUUCUCCUGUUCCACAGU	chr10:28897017-28897380(+)$1	363	205	229	22.5114
UAUCUUUUUUUUUUUGGCUGGGGU	chr11:102269165-102269434(-)$1	269	92	116	24.4737
GUCUUUUAUUUCCAUCUUUUAACA	chr4:83748610-83748860(-)$1	250	50	74	22.2485
UCAUUGACUAACCACAUCCACAAA	chr1:115260589-115260860(-)$1	271	60	84	22.9126
UAUCUCUGGCUUCACCAAACAGAG	chr9:115336916-115337295(+)$1	379	303	327	21.0824
AGGGGCAGUUCUACCUCCUCUGUC	chr11:62392497-62392748(-)$1	251	93	117	21.1442
CUCUGGGCCCCCUCCUCCCUCCUG	chr12:120649704-120649997(-)$1	293	66	90	23.5135
AAGCCAAACCCCCUACAGAUGGCU	chr7:138252149-138252428(+)$1	279	199	223	24.7252
AAAUGUUCCAGUACAACCAAUAUU	chr12:101787773-101788037(-)$1	264	210	234	21.2061
CUAUGGCCCCCAGAACUCCCCACC	chr16:67576722-67576981(+)$1	259	122	146	23.0088
CAGCGUCAUCUCCCCAGCCUGCUG	chr12:120125125-120125409(-)$1	284	165	189	22.7379
ACCUGUCACCCCCAAGCCCACAUC	chr6:30672915-30673205(-)$1	290	142	166	24.5252
GCCGGCUUCCUCCACCAGCGCCUG	chr19:41812454-41812746(+)$1	292	48	72	24.2873
UUGUGUUCUUCCAGCUUUGCACAA	chr19:15354183-15354398(-)$1	215	86	110	22.9529
UCAGGCACCCCCUUCACUCUGCCU	chr11:126133430-126133682(-)$1	252	113	137	21.3756
AGCCCACUUUCACACCCACUGGGC	chr1:202910429-202910656(-)$1	227	93	117	24.0229
UUGCACACUCAUCAACCUAUGCAA	chr19:39875742-39876035(+)$1	293	32	56	21.9394
AAAUAGUUAACAUUCAAAAAACUU	chr5:133533267-133533519(-)$1	252	145	169	22.2968
caggacccccuccaccaAGGUGCG	chr1:8418154-8418397(-)$1	243	123	147	22.5115
GUCAGAACACAAACAAACAAACUU	chr19:49843574-49843916(+)$1	342	303	327	19.8473
CGUGGUGUCCAAUACAUUCACUGC	chr20:35860681-35860894(+)$1	213	52	76	21.4708
CAGUUAUUGUUCUAGGUGUUAGCU	chr15:90809126-90809407(+)$1	281	212	236	24.8063
UUGGAGCCUGCUCUUUGAACUCCG	chr21:38574498-38574776(+)$1	278	147	171	24.1315
GUAAUGAUCACGCCAACAUUCAGC	chr22:42263106-42263358(+)$1	252	87	111	23.0794
AGACUCACCUCCCUUCCCCUCUGC	chr1:150238379-150238649(-)$1	270	29	53	19.6505
CCAAAAUAUGCAACUUUUUUUUGG	chr1:40538095-40538347(+)$1	252	90	114	22.9529
CAGCCACCACCCUCUUUUCUGUGC	chr5:32229074-32229308(-)$1	234	66	90	23.7013
AGCCCACUUUCACACCCACUGGGC	chr1:202910407-202910627(-)$1	220	64	88	24.0229
GUACCUGACCACUCUCUCCCAGGU	chr8:11695970-11696210(+)$1	240	90	114	23.0106
UCCUGGGGCUAGUGGUAUACCAGG	chr9:114994369-114994617(-)$1	248	178	202	24.7252
GAAGCGUUUUCUUAUUUAUUUCCG	chr3:40351239-40351495(+)$1	256	81	105	19.1548
CACCUCUCCAACAUCCCGUGAGUG	chr19:808658-808862(+)$1	204	87	111	23.2176
CAGCCUGGGGGAGUGGGGAAGGCU	chrX:153671361-153671612(+)$1	251	172	196	24.1423
CCCAUGUAUCUCAGUACCCCAUGG	chr3:49396700-49396954(-)$1	254	89	113	24.8063
cgcucucuccuccucCACAGAUGC	chr10:81070579-81070879(+)$1	300	81	105	21.3109
UGUCACUCUUGUUACAUUGUGUAC	chr2:85280618-85280907(+)$1	289	13	37	23.1523
CCAGUACGAAUGUGGGAAUUACUC	chr8:109247213-109247417(-)$1	204	130	154	23.8023
AGGUUGAAAAGGCCUCACUCUUCC	chr20:33128550-33128819(+)$1	269	237	261	20.6794
GCUGCAGCAACAGCCUUCAGCUCC	chr4:83748569-83748810(-)$1	241	102	126	22.1587
AUCGCACCCUCAUCAUAUUAUGCC	chr7:107399066-107399369(+)$1	303	64	88	22.7094
UCCCGCCAACCCUCCCAGCGGCCU	chr11:118770726-118771008(-)$1	282	144	168	20.1504
UUUUUCACCCCAUAAUUCAGGAAG	chr1:47746218-47746492(-)$1	274	87	111	23.7516
UACAUUCUUUGUUUUUUAAGUGUA	chr5:72208307-72208571(+)$1	264	35	59	22.0638
CUGGGCCUCCAUGACACUGCCCGG	chr12:124839883-124840218(-)$1	335	115	139	20.7888
GGCAGCACACCCGCAAAAAGUAGC	chr7:72416681-72416936(+)$1	255	69	93	23.8749
UUCGUCAGAAUUAUUCCACCGACG	chr19:49468588-49468808(+)$1	220	189	213	20.7296
CAGCCACCACCCUCUUUUCUGUGC	chr5:32229108-32229385(-)$1	277	143	167	23.7013
CCUGCUUCUCCAGACUUUAGCAGC	chr2:27263855-27264124(+)$1	269	243	267	21.3613
CUGGCACGCCCUACUCCACUGCCC	chr6:34212962-34213165(+)$1	203	164	188	23.9506
UUUGCUACCCGUUCCCCCAAGCAA	chr2:74275281-74275560(+)$1	279	7	31	23.8529
CAGAUGGCCUAUGGAAAAUGCAGC	chr16:24226300-24226537(+)$1	237	23	47	21.9802

#DB
((((((............))))))	chr16:81744426-81744670(+)$1	1	117	141	22.9529
))((((.............)))).	chr7:128637422-128637666(-)$1	1	138	162	21.6378
..((((.............)))).	chr12:7045315-7045572(+)$1	1	225	249	21.6815
)))(((((...........)))))	chr6:41566839-41567157(+)$1	1	78	102	21.2783
.(((((.............)))))	chr17:7403980-7404235(+)$1	1	32	56	24.0229
((((((...........)))))))	chr12:116429456-116429749(-)$1	1	72	96	21.4004
(((..((...........)).)))	chr3:40351354-40351564(+)$1	1	123	147	21.3577
((.(((.............))).)	chr15:75500265-75500566(+)$1	1	268	292	24.9727
((((((...........)))))).	chr5:139908001-139908304(+)$1	1	161	185	20.7788
.(((((.............)))))	chr19:14230773-14231063(-)$1	1	25	49	24.0229
(.((((...........)))).))	chr2:228416672-228416934(+)$1	1	155	179	21.0766
((((((...........)))))))	chrX:47085152-47085365(+)$1	1	95	119	21.4004
.(((((..............))))	chr1:155141899-155142120(-)$1	1	102	126	23.0847
(((((((............))).)	chrX:153664337-153664593(+)$1	1	153	177	22.9723
..((((.............))).)	chr3:184025301-184025531(+)$1	1	159	183	25.0123
((.(((.............))).)	chr1:228286330-228286560(+)$1	1	90	114	24.6401
(.(((((............)))))	chr19:55899568-55899843(+)$1	1	241	265	23.0725
((((((...........)))))))	chr3:33907815-33908067(+)$1	1	70	94	21.4004
(..((((............)))).	chr10:28897017-28897380(+)$1	1	205	229	22.5114
((((((.............)))))	chr11:102269165-102269434(-)$1	1	92	116	24.4737
((((.(((...........))).)	chr4:83748610-83748860(-)$1	1	50	74	22.2485
((.(((..............))).	chr1:115260589-115260860(-)$1	1	60	84	22.9126
..((((((...........)))))	chr9:115336916-115337295(+)$1	1	303	327	21.0824
((((((((...........)))))	chr11:62392497-62392748(-)$1	1	93	117	21.1442
..(.(((............))).)	chr12:120649704-120649997(-)$1	1	66	90	23.5135
((((((.............)))))	chr7:138252149-138252428(+)$1	1	199	223	24.7252
.((((((...........))))))	chr12:101787773-101788037(-)$1	1	210	234	21.2061
...(((.............)))..	chr16:67576722-67576981(+)$1	1	122	146	23.0088
(((((..............)))))	chr12:120125125-120125409(-)$1	1	165	189	22.7379
(..(((.............)))..	chr6:30672915-30673205(-)$1	1	142	166	24.5252
((.(((.............))).)	chr19:41812454-41812746(+)$1	1	48	72	24.2873
((((((............))))))	chr19:15354183-15354398(-)$1	1	86	110	22.9529
..(((((............)))))	chr11:126133430-126133682(-)$1	1	113	137	21.3756
.(((((.............)))))	chr1:202910429-202910656(-)$1	1	93	117	24.0229
(((((..............)))))	chr19:39875742-39876035(+)$1	1	32	56	21.9394
((((((((...........))).)	chr5:133533267-133533519(-)$1	1	145	169	22.2968
((.((((...........))).).	chr1:8418154-8418397(-)$1	1	123	147	22.5115
.(((((................))	chr19:49843574-49843916(+)$1	1	303	327	19.8473
.((((((...........))))))	chr20:35860681-35860894(+)$1	1	52	76	21.4708
.(((((.............)))))	chr15:90809126-90809407(+)$1	1	212	236	24.8063
))((((.............))))(	chr21:38574498-38574776(+)$1	1	147	171	24.1315
((..(((............)))..	chr22:42263106-42263358(+)$1	1	87	111	23.0794
(((................)))))	chr1:150238379-150238649(-)$1	1	29	53	19.6505
((((((............))))))	chr1:40538095-40538347(+)$1	1	90	114	22.9529
.(((((.............)).))	chr5:32229074-32229308(-)$1	1	66	90	23.7013
.(((((.............)))))	chr1:202910407-202910627(-)$1	1	64	88	24.0229
))(((((............)))))	chr8:11695970-11696210(+)$1	1	90	114	23.0106
((((((.............)))))	chr9:114994369-114994617(-)$1	1	178	202	24.7252
((((((................))	chr3:40351239-40351495(+)$1	1	81	105	19.1548
(((.((.............)))))	chr19:808658-808862(+)$1	1	87	111	23.2176
((((((.............)))).	chrX:153671361-153671612(+)$1	1	172	196	24.1423
.(((((.............)))))	chr3:49396700-49396954(-)$1	1	89	113	24.8063
.(((((............))).))	chr10:81070579-81070879(+)$1	1	81	105	21.3109
((((((............))).))	chr2:85280618-85280907(+)$1	1	13	37	23.1523
((((((.............)))).	chr8:109247213-109247417(-)$1	1	130	154	23.8023
(((..((...........))..))	chr20:33128550-33128819(+)$1	1	237	261	20.6794
((((.(((...........))).)	chr4:83748569-83748810(-)$1	1	102	126	22.1587
...(((..............))).	chr7:107399066-107399369(+)$1	1	64	88	22.7094
))).(((............)))..	chr11:118770726-118771008(-)$1	1	144	168	20.1504
((((((.............)))))	chr1:47746218-47746492(-)$1	1	87	111	23.7516
((((((............))))))	chr5:72208307-72208571(+)$1	1	35	59	22.0638
..((((............))))((	chr12:124839883-124840218(-)$1	1	115	139	20.7888
(((.((.............)).))	chr7:72416681-72416936(+)$1	1	69	93	23.8749
..((((..............))))	chr19:49468588-49468808(+)$1	1	189	213	20.7296
.(((((.............)).))	chr5:32229108-32229385(-)$1	1	143	167	23.7013
.(((((............))))).	chr2:27263855-27264124(+)$1	1	243	267	21.3613
(.((((.............)))).	chr6:34212962-34213165(+)$1	1	164	188	23.9506
((((((.............)))))	chr2:74275281-74275560(+)$1	1	7	31	23.8529
(((.((..............)).)	chr16:24226300-24226537(+)$1	1	23	47	21.9802

#PSSM
g : 0.15	: : 0.14	c : 0.11	e : 0.10	f : 0.08	d : 0.08	! : 0.07	[ : 0.07	i : 0.02	# : 0.02	b : 0.02	= : 0.02	E : 0.01	$ : 0.01	C : 0.01	
e : 0.24	g : 0.15	f : 0.10	c : 0.10	d : 0.07	! : 0.07	: : 0.05	[ : 0.04	i : 0.02	# : 0.02	b : 0.02	= : 0.02	E : 0.01	a : 0.01	
e : 0.23	d : 0.18	g : 0.15	f : 0.11	[ : 0.07	c : 0.07	! : 0.04	a : 0.02	i : 0.02	# : 0.02	b : 0.01	= : 0.01	
e : 0.23	d : 0.17	c : 0.17	g : 0.14	f : 0.10	[ : 0.05	! : 0.04	i : 0.02	a : 0.01	y : 0.01	: : 0.01	
e : 0.21	c : 0.21	d : 0.15	g : 0.13	f : 0.10	b : 0.07	! : 0.02	i : 0.02	[ : 0.02	y : 0.01	
c : 0.26	e : 0.20	d : 0.15	g : 0.11	b : 0.10	f : 0.08	i : 0.02	w : 0.02	y : 0.01	
v : 0.39	u : 0.11	c : 0.11	w : 0.10	t : 0.07	e : 0.05	f : 0.04	y : 0.04	b : 0.02	d : 0.01	i : 0.01	
v : 0.39	u : 0.23	t : 0.14	w : 0.10	c : 0.04	y : 0.04	e : 0.01	f : 0.01	i : 0.01	
v : 0.39	u : 0.23	t : 0.23	w : 0.10	y : 0.04	
v : 0.39	u : 0.23	t : 0.23	w : 0.10	y : 0.04	
v : 0.39	u : 0.23	t : 0.23	w : 0.10	y : 0.04	
v : 0.39	u : 0.23	t : 0.23	w : 0.10	y : 0.04	
v : 0.39	u : 0.23	t : 0.23	w : 0.10	y : 0.04	
v : 0.39	u : 0.23	t : 0.23	w : 0.10	y : 0.04	
v : 0.39	u : 0.23	t : 0.23	w : 0.10	y : 0.04	
v : 0.39	u : 0.23	t : 0.23	w : 0.10	y : 0.04	
v : 0.39	u : 0.23	t : 0.23	w : 0.10	y : 0.04	
v : 0.39	u : 0.23	t : 0.15	w : 0.10	g : 0.04	y : 0.04	f : 0.01	d : 0.01	
v : 0.39	u : 0.11	w : 0.10	g : 0.08	t : 0.08	f : 0.05	c : 0.04	y : 0.04	b : 0.02	d : 0.02	e : 0.01	
c : 0.24	e : 0.18	d : 0.13	g : 0.11	f : 0.10	b : 0.08	w : 0.07	i : 0.02	y : 0.02	
c : 0.27	e : 0.20	d : 0.14	g : 0.11	f : 0.10	b : 0.07	i : 0.02	y : 0.02	] : 0.01	2 : 0.01	
c : 0.23	e : 0.21	d : 0.14	g : 0.11	f : 0.10	] : 0.10	i : 0.02	y : 0.02	2 : 0.01	b : 0.01	
e : 0.24	d : 0.14	] : 0.14	g : 0.13	c : 0.11	f : 0.10	i : 0.02	2 : 0.02	5 : 0.01	a : 0.01	b : 0.01	: : 0.01	
e : 0.27	g : 0.15	c : 0.08	2 : 0.08	f : 0.08	d : 0.07	: : 0.05	] : 0.05	a : 0.02	i : 0.02	b : 0.02	5 : 0.01	= : 0.01	

#score	1562.9826714544595
#seq	69
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_CDS_m3_run2.txt

#BEAR
gggggssssssssssggg	chr11:294166-294395(+)$1	229	182	200	14.5890
eeeeesssssssssseee	chr11:62300130-62300439(-)$1	309	154	172	14.6044
b[bbuuuuuuuuuuuubb	chr4:1317276-1317577(+)$1	301	177	195	17.5072
eeeeuuuuuuuuuuuuee	chr21:35445786-35446180(+)$1	394	122	140	18.0465
ee[awwwwwwwwwwwwww	chr11:57509549-57509823(+)$1	274	108	126	16.9754
!!bbuuuuuuuuuuuubb	chr21:45562968-45563225(+)$1	257	185	203	17.8927
eeeettttttttttteee	chr6:86322450-86322733(-)$1	283	186	204	17.4951
gggguuuuuuuuuuuugg	chr4:78740022-78740331(-)$1	309	264	282	18.2043
===wwwwwwwwwwwwww=	chr11:62300888-62301187(-)$1	299	96	114	17.4507
iixxxxxxxxxxxxxxxi	chr11:62297251-62297525(-)$1	274	93	111	12.9586
eexxxxxxxxxxxxxxxe	chr6:31730659-31730979(+)$1	320	241	259	12.8114
ddduuuuuuuuuuuuddd	chr8:30669820-30670092(-)$1	272	248	266	17.3894
fffattttttttttta]f	chr1:46775726-46775967(+)$1	241	193	211	17.6214
ccbbuuuuuuuuuuuubb	chr16:2871146-2871481(+)$1	335	240	258	17.6498
eeeeesssssssssseee	chr11:62300750-62301065(-)$1	315	290	308	14.6044
iiiiissssssssssiii	chr2:178082332-178082600(+)$1	268	54	72	14.4099
[ddddssssssssssddd	chr19:2270369-2270619(+)$1	250	37	55	14.3400
cccuuuuuuuuuuuuccc	chr9:140260656-140261004(-)$1	348	300	318	17.9409
fffwwwwwwwwwwwwwwf	chr16:31501949-31502342(-)$1	393	106	124	16.9330
[ddddssssssssssddd	chr7:127669214-127669508(+)$1	294	127	145	14.3400
eeevvvvvvvvvvvvvee	chr12:111180378-111180616(-)$1	238	32	50	16.4197
hhhhhsssssssssshhh	chr11:62284591-62284841(-)$1	250	108	126	13.6213
ddddtttttttttttddd	chr11:62288579-62288826(-)$1	247	115	133	17.0981
c[bbssssssssssbb]c	chr16:31201503-31201720(+)$1	217	123	141	14.0269
dddvvvvvvvvvvvvvdd	chr22:19711795-19712083(+)$1	288	192	210	16.0949
hhhhhsssssssssshhh	chr19:10406896-10407146(+)$1	250	57	75	13.6213
gggggssssssssssggg	chr11:62285348-62285634(-)$1	286	31	49	14.5890
eexxxxxxxxxxxxxxxe	chr11:62285994-62286241(-)$1	247	179	197	12.8114
iibbvvvvvvvvvvvvvb	chr22:19838613-19838881(-)$1	268	66	84	16.1249
[ccctttttttttttccc	chr17:80789514-80789840(+)$1	326	68	86	17.9253
dddwwwwwwwwwwwwwwd	chr3:49050189-49050477(+)$1	288	173	191	17.0469
d!!cccrrrrrrrrrccc	chr19:10221604-10221954(+)$1	350	125	143	9.5377
##bbtttttttttttbbd	chr18:12329430-12329840(-)$1	410	235	253	17.0505
hhhhhsssssssssshhh	chr19:10406946-10407212(+)$1	266	7	25	13.6213
gg[attttttttttta]g	chr8:145693794-145694067(+)$1	273	125	143	18.1467
hhhhhsssssssssshhh	chr19:2270478-2270739(+)$1	261	78	96	13.6213
eeeettttttttttteee	chr15:80214902-80215226(-)$1	324	259	277	17.4951
fffffssssssssssfff	chr12:132414114-132414442(+)$1	328	161	179	13.8856
!!ddddrrrrrrrrrddd	chr10:103546031-103546355(-)$1	324	235	253	8.8142
!!bbtttttttttttbb3	chr2:178081530-178081768(+)$1	238	163	181	17.3765
i[bbssssssssssbb]i	chr22:50018148-50018377(-)$1	229	31	49	14.1133
eecccssssssssssccc	chr8:145106177-145106461(-)$1	284	235	253	15.1134
ddcccssssssssssccc	chr22:45723821-45724044(+)$1	223	153	171	14.9129
gggvvvvvvvvvvvvvgg	chr11:62285819-62286078(-)$1	259	141	159	16.5821
ggggggrrrrrrrrrggg	chr4:76649854-76650118(+)$1	264	11	29	8.7163
ffffuuuuuuuuuuuuff	chr16:725962-726262(+)$1	300	133	151	17.5047
c[bbssssssssssbb]c	chr16:31201529-31201783(+)$1	254	97	115	14.0269

#otherMatches

#Seq PSSM
GGGAACAAGCUCAACUUC	chr11:294166-294395(+)$1	229	182	200	14.5890
CACUUAAAGGCUCCAGAG	chr11:62300130-62300439(-)$1	309	154	172	14.6044
CGGCACACACCUCACAGU	chr4:1317276-1317577(+)$1	301	177	195	17.5072
CAGUUUCUAGGUCCCCAC	chr21:35445786-35446180(+)$1	394	122	140	18.0465
UGGUGGAAGAGUUGAAGA	chr11:57509549-57509823(+)$1	274	108	126	16.9754
GAGCAGGAGGAAGGUGGC	chr21:45562968-45563225(+)$1	257	185	203	17.8927
AAGGAAAUCAAGCAACCU	chr6:86322450-86322733(-)$1	283	186	204	17.4951
CAGCGGGGCUGGGAGAGC	chr4:78740022-78740331(-)$1	309	264	282	18.2043
CUUGGGUGGCAGAGGAGG	chr11:62300888-62301187(-)$1	299	96	114	17.4507
ACAUCAAAGGCCCCAAAG	chr11:62297251-62297525(-)$1	274	93	111	12.9586
GGGACAAGCCGCCAAGAC	chr6:31730659-31730979(+)$1	320	241	259	12.8114
UGCGAGAAGGUGAGGGCG	chr8:30669820-30670092(-)$1	272	248	266	17.3894
UCUCGAUCACAUACAGAA	chr1:46775726-46775967(+)$1	241	193	211	17.6214
GGCCUGUAACAAGAAUGG	chr16:2871146-2871481(+)$1	335	240	258	17.6498
GGCCCCCAAAUCACUGGG	chr11:62300750-62301065(-)$1	315	290	308	14.6044
AUACACUUAAGUUUUUGU	chr2:178082332-178082600(+)$1	268	54	72	14.4099
UGGGCCCCGUUUUUCGCC	chr19:2270369-2270619(+)$1	250	37	55	14.3400
ACGAAAAUAAUUCUCCGU	chr9:140260656-140261004(-)$1	348	300	318	17.9409
UGGAAGACCGAGAAGCAC	chr16:31501949-31502342(-)$1	393	106	124	16.9330
UAGUUGGAGGUGUUAAGC	chr7:127669214-127669508(+)$1	294	127	145	14.3400
GGAAAGGAGGUGUGAGUc	chr12:111180378-111180616(-)$1	238	32	50	16.4197
UUUCCAAACCUAAAGGGA	chr11:62284591-62284841(-)$1	250	108	126	13.6213
ACUUGAAGGGUCCCAAAG	chr11:62288579-62288826(-)$1	247	115	133	17.0981
uggcaguggugguggugg	chr16:31201503-31201720(+)$1	217	123	141	14.0269
GGAGAGAACCGGUGCGUC	chr22:19711795-19712083(+)$1	288	192	210	16.0949
GGGGCGGUGGGAGAAGCC	chr19:10406896-10407146(+)$1	250	57	75	13.6213
UUUCUGGCGAACUGAAGG	chr11:62285348-62285634(-)$1	286	31	49	14.5890
CCGAUGUUUCUCUAAAGG	chr11:62285994-62286241(-)$1	247	179	197	12.8114
CCCCAGAAAACAGAGGAG	chr22:19838613-19838881(-)$1	268	66	84	16.1249
GCUCUGUGUAAAAGUGAG	chr17:80789514-80789840(+)$1	326	68	86	17.9253
GAGAUCUCAGCCGCACCC	chr3:49050189-49050477(+)$1	288	173	191	17.0469
CAAGACCAAGGACAAGUC	chr19:10221604-10221954(+)$1	350	125	143	9.5377
AAGGAGAAAGAGGAGCCC	chr18:12329430-12329840(-)$1	410	235	253	17.0505
GGGGCGGUGGGAGAAGCC	chr19:10406946-10407212(+)$1	266	7	25	13.6213
UGGGGGUGCAGGAGGUGC	chr8:145693794-145694067(+)$1	273	125	143	18.1467
GGAAGACCCCCGCCGCUU	chr19:2270478-2270739(+)$1	261	78	96	13.6213
AGGUAGUGGGGUAAAGCU	chr15:80214902-80215226(-)$1	324	259	277	17.4951
CCAGCUUCGCGCGCUGUU	chr12:132414114-132414442(+)$1	328	161	179	13.8856
AAUGGUAACAAAUCAGCC	chr10:103546031-103546355(-)$1	324	235	253	8.8142
UUGAUAUUUUAACUUUCU	chr2:178081530-178081768(+)$1	238	163	181	17.3765
UGUGCUGCGUCUUCCAGG	chr22:50018148-50018377(-)$1	229	31	49	14.1133
GGAUCCCGCAAUAAAGAU	chr8:145106177-145106461(-)$1	284	235	253	15.1134
CCGGCGGCAGAACAAGCC	chr22:45723821-45724044(+)$1	223	153	171	14.9129
UCUGUUCCCAGCAUGAAG	chr11:62285819-62286078(-)$1	259	141	159	16.5821
CCGCCGAGUUGGAGGCGG	chr4:76649854-76650118(+)$1	264	11	29	8.7163
UCCAGGAUGGGUAGGGUG	chr16:725962-726262(+)$1	300	133	151	17.5047
uggcaguggugguggugg	chr16:31201529-31201783(+)$1	254	97	115	14.0269

#DB
(((((..........)))	chr11:294166-294395(+)$1	1	182	200	14.5890
(((((..........)))	chr11:62300130-62300439(-)$1	1	154	172	14.6044
(.((............))	chr4:1317276-1317577(+)$1	1	177	195	17.5072
((((............))	chr21:35445786-35446180(+)$1	1	122	140	18.0465
((.(..............	chr11:57509549-57509823(+)$1	1	108	126	16.9754
..((............))	chr21:45562968-45563225(+)$1	1	185	203	17.8927
((((...........)))	chr6:86322450-86322733(-)$1	1	186	204	17.4951
((((............))	chr4:78740022-78740331(-)$1	1	264	282	18.2043
(((..............)	chr11:62300888-62301187(-)$1	1	96	114	17.4507
((...............)	chr11:62297251-62297525(-)$1	1	93	111	12.9586
((...............)	chr6:31730659-31730979(+)$1	1	241	259	12.8114
(((............)))	chr8:30669820-30670092(-)$1	1	248	266	17.3894
((((...........).)	chr1:46775726-46775967(+)$1	1	193	211	17.6214
((((............))	chr16:2871146-2871481(+)$1	1	240	258	17.6498
(((((..........)))	chr11:62300750-62301065(-)$1	1	290	308	14.6044
(((((..........)))	chr2:178082332-178082600(+)$1	1	54	72	14.4099
.((((..........)))	chr19:2270369-2270619(+)$1	1	37	55	14.3400
(((............)))	chr9:140260656-140261004(-)$1	1	300	318	17.9409
(((..............)	chr16:31501949-31502342(-)$1	1	106	124	16.9330
.((((..........)))	chr7:127669214-127669508(+)$1	1	127	145	14.3400
(((.............))	chr12:111180378-111180616(-)$1	1	32	50	16.4197
(((((..........)))	chr11:62284591-62284841(-)$1	1	108	126	13.6213
((((...........)))	chr11:62288579-62288826(-)$1	1	115	133	17.0981
(.((..........)).)	chr16:31201503-31201720(+)$1	1	123	141	14.0269
(((.............))	chr22:19711795-19712083(+)$1	1	192	210	16.0949
(((((..........)))	chr19:10406896-10407146(+)$1	1	57	75	13.6213
(((((..........)))	chr11:62285348-62285634(-)$1	1	31	49	14.5890
((...............)	chr11:62285994-62286241(-)$1	1	179	197	12.8114
((((.............)	chr22:19838613-19838881(-)$1	1	66	84	16.1249
.(((...........)))	chr17:80789514-80789840(+)$1	1	68	86	17.9253
(((..............)	chr3:49050189-49050477(+)$1	1	173	191	17.0469
(..(((.........)))	chr19:10221604-10221954(+)$1	1	125	143	9.5377
..((...........)))	chr18:12329430-12329840(-)$1	1	235	253	17.0505
(((((..........)))	chr19:10406946-10407212(+)$1	1	7	25	13.6213
((.(...........).)	chr8:145693794-145694067(+)$1	1	125	143	18.1467
(((((..........)))	chr19:2270478-2270739(+)$1	1	78	96	13.6213
((((...........)))	chr15:80214902-80215226(-)$1	1	259	277	17.4951
(((((..........)))	chr12:132414114-132414442(+)$1	1	161	179	13.8856
..((((.........)))	chr10:103546031-103546355(-)$1	1	235	253	8.8142
..((...........)).	chr2:178081530-178081768(+)$1	1	163	181	17.3765
(.((..........)).)	chr22:50018148-50018377(-)$1	1	31	49	14.1133
(((((..........)))	chr8:145106177-145106461(-)$1	1	235	253	15.1134
))(((..........)))	chr22:45723821-45724044(+)$1	1	153	171	14.9129
(((.............))	chr11:62285819-62286078(-)$1	1	141	159	16.5821
((((((.........)))	chr4:76649854-76650118(+)$1	1	11	29	8.7163
((((............))	chr16:725962-726262(+)$1	1	133	151	17.5047
(.((..........)).)	chr16:31201529-31201783(+)$1	1	97	115	14.0269

#PSSM
e : 0.21	g : 0.12	d : 0.12	i : 0.08	f : 0.08	c : 0.08	h : 0.08	! : 0.06	[ : 0.06	b : 0.02	= : 0.02	# : 0.02	
e : 0.21	d : 0.14	g : 0.12	[ : 0.08	! : 0.08	f : 0.08	h : 0.08	i : 0.06	c : 0.06	= : 0.02	# : 0.02	
b : 0.19	d : 0.14	e : 0.12	g : 0.10	f : 0.08	c : 0.08	h : 0.08	x : 0.06	[ : 0.04	= : 0.02	i : 0.02	! : 0.02	
b : 0.19	e : 0.10	g : 0.08	d : 0.08	h : 0.08	c : 0.08	a : 0.06	w : 0.06	x : 0.06	v : 0.06	u : 0.04	f : 0.04	i : 0.02	
u : 0.17	t : 0.17	w : 0.08	v : 0.08	h : 0.08	g : 0.06	x : 0.06	d : 0.06	s : 0.06	c : 0.06	e : 0.04	i : 0.02	f : 0.02	
s : 0.36	u : 0.17	t : 0.17	w : 0.08	v : 0.08	x : 0.06	c : 0.02	d : 0.02	g : 0.02	
s : 0.36	u : 0.17	t : 0.17	w : 0.08	v : 0.08	x : 0.06	r : 0.06	
s : 0.36	u : 0.17	t : 0.17	w : 0.08	v : 0.08	x : 0.06	r : 0.06	
s : 0.36	u : 0.17	t : 0.17	w : 0.08	v : 0.08	x : 0.06	r : 0.06	
s : 0.36	u : 0.17	t : 0.17	w : 0.08	v : 0.08	x : 0.06	r : 0.06	
s : 0.36	u : 0.17	t : 0.17	w : 0.08	v : 0.08	x : 0.06	r : 0.06	
s : 0.36	u : 0.17	t : 0.17	w : 0.08	v : 0.08	x : 0.06	r : 0.06	
s : 0.36	u : 0.17	t : 0.17	w : 0.08	v : 0.08	x : 0.06	r : 0.06	
s : 0.36	u : 0.17	t : 0.17	w : 0.08	v : 0.08	x : 0.06	r : 0.06	
s : 0.29	u : 0.17	t : 0.17	w : 0.08	v : 0.08	x : 0.06	b : 0.06	r : 0.06	
u : 0.12	d : 0.10	c : 0.10	b : 0.10	e : 0.08	w : 0.08	v : 0.08	h : 0.08	g : 0.06	x : 0.06	a : 0.04	i : 0.02	f : 0.02	
e : 0.12	d : 0.12	g : 0.10	b : 0.10	] : 0.10	c : 0.10	w : 0.08	h : 0.08	x : 0.06	f : 0.04	i : 0.02	v : 0.02	
e : 0.17	d : 0.17	c : 0.14	g : 0.12	b : 0.08	f : 0.08	h : 0.08	i : 0.06	w : 0.02	= : 0.02	3 : 0.02	

#score	723.6644687989701
#seq	47
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_UTR_m3_run2.txt

#BEAR
=========qqqqqqqq==========	chr16:89981287-89981553(+)$1	266	48	75	18.0669
iiiiiiiiiqqqqqqqqiiiiiiiii]	chr4:78740437-78740689(-)$1	252	221	248	17.4555
ff"""ddddqqqqqqqqddddffffff	chr17:17723755-17723994(-)$1	239	206	233	15.5201
b[bb[ddddqqqqqqqqdddd]bb22b	chr7:1889361-1889609(-)$1	248	134	161	15.0936
ccc[eeeeeqqqqqqqqeeeeeccc:f	chr10:73062066-73062317(+)$1	251	49	76	14.8036
[ccc[ddddqqqqqqqqdddd]ccc]f	chr17:60022445-60022706(-)$1	261	150	177	16.4464
gggggg!!aqqqqqqqqa]ggggggg4	chr1:21100651-21100914(-)$1	263	106	133	16.8834
[ccc!!cccqqqqqqqqcccccciiii	chr16:89980030-89980326(+)$1	296	209	236	17.2309
gggggggbbqqqqqqqqbb]ggggggg	chr2:199011800-199012099(+)$1	299	54	81	15.8775
iiiiiiiiiqqqqqqqqiiiiiiiii4	chr19:40738398-40738703(-)$1	305	117	144	17.4659
ff####cccqqqqqqqqccc333ffff	chr6:34555385-34555649(-)$1	264	13	40	16.3352
+bb[eeeeeqqqqqqqqeeeeebb>>>	chr6:160526811-160527135(+)$1	324	271	298	14.1175
iiiiiiiiirrrrrrrrriiiiiiiii	chr17:75211077-75211337(+)$1	260	176	203	11.9192
[bb[eeeeeqqqqqqqqeeeee]bb>>	chr12:56991254-56991488(-)$1	234	150	177	15.2388
ccgggggggqqqqqqqqgggggggccc	chr6:143382351-143382621(+)$1	270	204	231	16.5656
[ccc!!cccqqqqqqqqcccccciiii	chr16:89980226-89980522(+)$1	296	13	40	17.2309
!a"""ddddqqqqqqqqdddd333a22	chr12:56991187-56991454(-)$1	267	186	213	16.6819
hhhhhhcccqqqqqqqqccc]hhhhhh	chr1:40888459-40888735(+)$1	276	179	206	14.7175
cccdddd[aqqqqqqqqa]dddd]ccc	chr21:44269329-44269543(-)$1	214	87	114	15.2498
ddd!!ddddqqqqqqqqdddd]ddddd	chr1:228332197-228332528(+)$1	331	237	264	15.2603
::gggggggqqqqqqqqggggggg:dd	chr1:42643311-42643563(-)$1	252	170	197	13.4228
ggg!!ddddqqqqqqqqdddd]ggggg	chr1:113247485-113247742(-)$1	257	148	175	16.9324
eeee!!cccqqqqqqqqccc]eeeee]	chr3:15483590-15483859(+)$1	269	140	167	16.0592
""gggggggrrrrrrrrrggggggg33	chr8:12580133-12580408(-)$1	275	75	102	11.8280
b"""ccc[aqqqqqqqqaccc]bb]cc	chr2:37072882-37073160(-)$1	278	165	192	16.1423
dddd!!cccqqqqqqqqccc]dddd]b	chr10:73059639-73059899(+)$1	260	205	232	15.5347
##gggggggqqqqqqqqggggggg444	chr1:206906539-206906840(+)$1	301	94	121	16.9456
ggggggcccqqqqqqqqccc333gggg	chr22:20109980-20110244(+)$1	264	84	111	17.2726
eeeeeeeeeqqqqqqqqeeeee333ee	chr7:4804073-4804343(+)$1	270	14	41	15.3872
b[ddddcccqqqqqqqqccc]ddddbb	chr17:7107556-7107842(-)$1	286	197	224	14.8107
a!!a!!cccrrrrrrrrrccc22a22a	chr19:34287644-34287903(+)$1	259	108	135	11.1420
=========qqqqqqqq==========	chr16:89980656-89980957(+)$1	301	11	38	18.0669
[bb[eeeeeqqqqqqqqeeeee]bbbb	chr12:56991288-56991535(-)$1	247	197	224	15.0546
ggggggg[aqqqqqqqqa]ggggggg2	chr10:94451854-94452078(+)$1	224	97	124	16.7522
=========qqqqqqqq==========	chr16:89980757-89981047(+)$1	290	187	214	18.0669
ee[ffffffqqqqqqqqffffff]eee	chr5:1222797-1223085(+)$1	288	155	182	14.1564
[eeeee[bbqqqqqqqqbb]eeeee]a	chr15:74702096-74702368(-)$1	272	182	209	14.7095
eeeee[cccrrrrrrrrrccc]eeeee	chr21:45323749-45323973(+)$1	224	132	159	10.1373
[dddd!!bbqqqqqqqqbb]dddd]dd	chr11:791023-791318(-)$1	295	152	179	14.1055
=========qqqqqqqq==========	chr16:29679179-29679448(+)$1	269	75	102	18.0669
!!bbeeeeeqqqqqqqqeeeee]bb44	chr17:36884492-36884796(+)$1	304	73	100	15.5858
g"""eeeeeqqqqqqqqeeeee22ggg	chr5:180004012-180004359(+)$1	347	200	227	16.0713
h!!bb[cccqqqqqqqqccc]bb333h	chr17:26880520-26880775(-)$1	255	177	204	15.7519
gg"""ddddqqqqqqqqdddd333ggg	chr1:156435168-156435438(-)$1	270	237	264	16.8922
""gggggggrrrrrrrrrggggggg33	chr15:68499923-68500174(-)$1	251	41	68	11.8280
&&bb[ddddqqqqqqqqdddd]bbfff	chr3:51701938-51702199(+)$1	261	58	85	14.1537
fffff[cccqqqqqqqqcccffffff]	chr20:32263997-32264284(-)$1	287	255	282	15.4123
=========qqqqqqqq==========	chr1:158580697-158581035(-)$1	338	291	318	18.0669
ddd!!ddddqqqqqqqqdddd22dddd	chr2:135208180-135208460(+)$1	280	124	151	15.0990

#otherMatches

#Seq PSSM
ggugcacauuugugugugugugugccu	chr16:89981287-89981553(+)$1	266	48	75	18.0669
AAGAGAAUGAGGUAGAGUGUUCUUUUG	chr4:78740437-78740689(-)$1	252	221	248	17.4555
UUUGACCCACCCUAUGCUGGGAGUGGG	chr17:17723755-17723994(-)$1	239	206	233	15.5201
GUGUCGGGCACCGCGCCGUCCUGCUUC	chr7:1889361-1889609(-)$1	248	134	161	15.0936
GAGCGAGCGUGUGUGUGUGCUCCUCUG	chr10:73062066-73062317(+)$1	251	49	76	14.8036
UUCUCAGUGAAUUCUGGUAUUCAGACU	chr17:60022445-60022706(-)$1	261	150	177	16.4464
gcuagguugggcuugaacuccuggccu	chr1:21100651-21100914(-)$1	263	106	133	16.8834
GCAGCUGGACAGGCCACUCCCUGGGCC	chr16:89980030-89980326(+)$1	296	209	236	17.2309
UUAAAGCCUUUAGUAUCAGUGUUUUAA	chr2:199011800-199012099(+)$1	299	54	81	15.8775
GCUUGGGCCCCAUCCCUGGCCCGAGCA	chr19:40738398-40738703(-)$1	305	117	144	17.4659
GAGGGGUUCAGACUUGGGAAGAAUCUG	chr6:34555385-34555649(-)$1	264	13	40	16.3352
AAGUGUUGAUCAACCAUUCGACCUAUA	chr6:160526811-160527135(+)$1	324	271	298	14.1175
AAGCAAAUCAGAAUAUGGGAUUUGUUU	chr17:75211077-75211337(+)$1	260	176	203	11.9192
UGACCCUGUAUUGUUUGAUAGGAUCCA	chr12:56991254-56991488(-)$1	234	150	177	15.2388
CCUGAAUGGCCUGAGACCCAUUCGCCC	chr6:143382351-143382621(+)$1	270	204	231	16.5656
GCAGCUGGACAGGCCACUCCCUGGGCC	chr16:89980226-89980522(+)$1	296	13	40	17.2309
UGUUUAAAACCAUCACUUUUUUGUCUU	chr12:56991187-56991454(-)$1	267	186	213	16.6819
UUUGUUUAGUUUUAGGUUUACAACAGA	chr1:40888459-40888735(+)$1	276	179	206	14.7175
CCUUGGCACACACUGCAGAGCCACAGG	chr21:44269329-44269543(-)$1	214	87	114	15.2498
GCUGCACCUCAGCAAACAGGUAGGCCC	chr1:228332197-228332528(+)$1	331	237	264	15.2603
AAGCCAGCCAUGGUAAGGGCUGGUGAG	chr1:42643311-42643563(-)$1	252	170	197	13.4228
CUGAGUCACAGGGAGGGGUGGGCAGGG	chr1:113247485-113247742(-)$1	257	148	175	16.9324
uguguguguguguaugAAUGGUAUAUU	chr3:15483590-15483859(+)$1	269	140	167	16.0592
GAACUCUUUAUGUCUGUGAGAGAgugu	chr8:12580133-12580408(-)$1	275	75	102	11.8280
AUCAAUGUCUUUUUAAUGUAUCUGCUC	chr2:37072882-37073160(-)$1	278	165	192	16.1423
AGAGAGACUGAACAGAGAGUACUUUGC	chr10:73059639-73059899(+)$1	260	205	232	15.5347
ugugugugugugugugugcacacgugu	chr1:206906539-206906840(+)$1	301	94	121	16.9456
GUGUUUGUUGAAUUUAAAACCAGAAAU	chr22:20109980-20110244(+)$1	264	84	111	17.2726
UGGAGGGUGAGAGAUUGCGCCCCGUUC	chr7:4804073-4804343(+)$1	270	14	41	15.3872
AUGGGACCCUCCGUUAUGGGCUCCCUC	chr17:7107556-7107842(-)$1	286	197	224	14.8107
gggCGAGAGAGAAAGUAACUCCAGGAC	chr19:34287644-34287903(+)$1	259	108	135	11.1420
ugugugccugugugugugggugcacau	chr16:89980656-89980957(+)$1	301	11	38	18.0669
UGACCCUGUAUUGUUUGAUAGGAUCCA	chr12:56991288-56991535(-)$1	247	197	224	15.0546
uauguuugugugucggugggaacgugu	chr10:94451854-94452078(+)$1	224	97	124	16.7522
ggugcacauuugugugugugugcgccu	chr16:89980757-89981047(+)$1	290	187	214	18.0669
GGGACGUGCUGUGCCCUGCACGUGCCC	chr5:1222797-1223085(+)$1	288	155	182	14.1564
GGGUUCUUGGAGAGUGGCAUGAGCUGG	chr15:74702096-74702368(-)$1	272	182	209	14.7095
CUGCUGACCUUGUGCCUUGGUAAGUGG	chr21:45323749-45323973(+)$1	224	132	159	10.1373
UGGGGCUGCUGGGGACUGCCCCCCUUC	chr11:791023-791318(-)$1	295	152	179	14.1055
gcgugcaugugccuguguguguaugug	chr16:29679179-29679448(+)$1	269	75	102	18.0669
UAACCUCAGUCCCUUUUUUGAGAGUGA	chr17:36884492-36884796(+)$1	304	73	100	15.5858
ACAACCAGGAAAACUUACUUGGGAUUA	chr5:180004012-180004359(+)$1	347	200	227	16.0713
uuugcacuuauugucuggagagcuuug	chr17:26880520-26880775(-)$1	255	177	204	15.7519
GAUUGGCAGUUAGCCCUCUGUGCUUCU	chr1:156435168-156435438(-)$1	270	237	264	16.8922
CAUCUUCUGGUAGCCGUGCAGGAGAGG	chr15:68499923-68500174(-)$1	251	41	68	11.8280
CACUACUGGGAUGAUAUUCAGAAGAGA	chr3:51701938-51702199(+)$1	261	58	85	14.1537
AGAGCACUUCUGUCUUAAAGGUUUUUU	chr20:32263997-32264284(-)$1	287	255	282	15.4123
GCUUUAUUCCGAUUAUAGAAUAAAGUA	chr1:158580697-158581035(-)$1	338	291	318	18.0669
CUUGGGCCUAGGAAGAAGGGCAGAAGU	chr2:135208180-135208460(+)$1	280	124	151	15.0990

#DB
(((((((((........))))))))))	chr16:89981287-89981553(+)$1	1	48	75	18.0669
(((((((((........))))))))).	chr4:78740437-78740689(-)$1	1	221	248	17.4555
((...((((........))))))))))	chr17:17723755-17723994(-)$1	1	206	233	15.5201
(.((.((((........)))).))..)	chr7:1889361-1889609(-)$1	1	134	161	15.0936
(((.(((((........)))))))).(	chr10:73062066-73062317(+)$1	1	49	76	14.8036
.(((.((((........)))).))).)	chr17:60022445-60022706(-)$1	1	150	177	16.4464
((((((..(........).))))))).	chr1:21100651-21100914(-)$1	1	106	133	16.8834
.(((..(((........))))))))))	chr16:89980030-89980326(+)$1	1	209	236	17.2309
(((((((((........)).)))))))	chr2:199011800-199012099(+)$1	1	54	81	15.8775
(((((((((........))))))))).	chr19:40738398-40738703(-)$1	1	117	144	17.4659
((....(((........)))...))))	chr6:34555385-34555649(-)$1	1	13	40	16.3352
.((.(((((........)))))))...	chr6:160526811-160527135(+)$1	1	271	298	14.1175
(((((((((.........)))))))))	chr17:75211077-75211337(+)$1	1	176	203	11.9192
.((.(((((........))))).))..	chr12:56991254-56991488(-)$1	1	150	177	15.2388
))(((((((........)))))))(((	chr6:143382351-143382621(+)$1	1	204	231	16.5656
.(((..(((........))))))))))	chr16:89980226-89980522(+)$1	1	13	40	17.2309
.(...((((........))))...)..	chr12:56991187-56991454(-)$1	1	186	213	16.6819
(((((((((........))).))))))	chr1:40888459-40888735(+)$1	1	179	206	14.7175
(((((((.(........).)))).)))	chr21:44269329-44269543(-)$1	1	87	114	15.2498
(((..((((........)))).)))))	chr1:228332197-228332528(+)$1	1	237	264	15.2603
..(((((((........))))))).((	chr1:42643311-42643563(-)$1	1	170	197	13.4228
(((..((((........)))).)))))	chr1:113247485-113247742(-)$1	1	148	175	16.9324
((((..(((........))).))))).	chr3:15483590-15483859(+)$1	1	140	167	16.0592
..(((((((.........)))))))..	chr8:12580133-12580408(-)$1	1	75	102	11.8280
(...(((.(........)))).)).))	chr2:37072882-37073160(-)$1	1	165	192	16.1423
((((..(((........))).)))).)	chr10:73059639-73059899(+)$1	1	205	232	15.5347
..(((((((........)))))))...	chr1:206906539-206906840(+)$1	1	94	121	16.9456
(((((((((........)))...))))	chr22:20109980-20110244(+)$1	1	84	111	17.2726
(((((((((........)))))...))	chr7:4804073-4804343(+)$1	1	14	41	15.3872
(.(((((((........))).))))))	chr17:7107556-7107842(-)$1	1	197	224	14.8107
(..(..(((.........)))..)..)	chr19:34287644-34287903(+)$1	1	108	135	11.1420
(((((((((........))))))))))	chr16:89980656-89980957(+)$1	1	11	38	18.0669
.((.(((((........))))).))))	chr12:56991288-56991535(-)$1	1	197	224	15.0546
(((((((.(........).))))))).	chr10:94451854-94452078(+)$1	1	97	124	16.7522
(((((((((........))))))))))	chr16:89980757-89981047(+)$1	1	187	214	18.0669
((.((((((........)))))).)))	chr5:1222797-1223085(+)$1	1	155	182	14.1564
.(((((.((........)).))))).)	chr15:74702096-74702368(-)$1	1	182	209	14.7095
(((((.(((.........))).)))))	chr21:45323749-45323973(+)$1	1	132	159	10.1373
.((((..((........)).)))).))	chr11:791023-791318(-)$1	1	152	179	14.1055
(((((((((........))))))))))	chr16:29679179-29679448(+)$1	1	75	102	18.0669
..(((((((........))))).))..	chr17:36884492-36884796(+)$1	1	73	100	15.5858
(...(((((........)))))..)))	chr5:180004012-180004359(+)$1	1	200	227	16.0713
(..((.(((........))).))...)	chr17:26880520-26880775(-)$1	1	177	204	15.7519
((...((((........))))...)))	chr1:156435168-156435438(-)$1	1	237	264	16.8922
..(((((((.........)))))))..	chr15:68499923-68500174(-)$1	1	41	68	11.8280
..((.((((........)))).)))))	chr3:51701938-51702199(+)$1	1	58	85	14.1537
(((((.(((........))))))))).	chr20:32263997-32264284(-)$1	1	255	282	15.4123
(((((((((........))))))))))	chr1:158580697-158581035(-)$1	1	291	318	18.0669
(((..((((........))))..))))	chr2:135208180-135208460(+)$1	1	124	151	15.0990

#PSSM
[ : 0.14	g : 0.14	= : 0.10	e : 0.08	i : 0.06	f : 0.06	b : 0.06	c : 0.06	d : 0.06	! : 0.04	h : 0.04	" : 0.04	+ : 0.02	: : 0.02	# : 0.02	a : 0.02	& : 0.02	
c : 0.12	g : 0.12	= : 0.10	e : 0.10	d : 0.08	" : 0.08	i : 0.06	f : 0.06	b : 0.06	! : 0.06	[ : 0.04	a : 0.02	h : 0.02	: : 0.02	# : 0.02	& : 0.02	
g : 0.20	b : 0.12	= : 0.10	" : 0.10	c : 0.10	d : 0.10	e : 0.08	i : 0.06	! : 0.04	# : 0.02	h : 0.02	[ : 0.02	f : 0.02	
g : 0.18	= : 0.10	" : 0.10	b : 0.08	[ : 0.08	d : 0.08	e : 0.08	i : 0.06	c : 0.06	! : 0.06	f : 0.04	# : 0.02	h : 0.02	a : 0.02	
e : 0.18	g : 0.18	! : 0.16	= : 0.10	i : 0.06	" : 0.06	[ : 0.06	d : 0.06	f : 0.04	# : 0.02	h : 0.02	c : 0.02	b : 0.02	
d : 0.22	g : 0.18	e : 0.16	! : 0.12	= : 0.10	i : 0.06	[ : 0.06	# : 0.02	h : 0.02	c : 0.02	f : 0.02	
c : 0.26	d : 0.20	e : 0.14	g : 0.14	= : 0.10	i : 0.06	! : 0.04	f : 0.02	[ : 0.02	
c : 0.24	d : 0.18	e : 0.14	= : 0.10	g : 0.10	i : 0.06	b : 0.06	[ : 0.06	! : 0.02	f : 0.02	
c : 0.24	d : 0.18	e : 0.14	= : 0.10	g : 0.10	a : 0.08	i : 0.06	b : 0.06	f : 0.02	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
c : 0.20	d : 0.18	e : 0.14	= : 0.10	r : 0.10	a : 0.08	b : 0.06	g : 0.06	i : 0.04	f : 0.02	
c : 0.26	d : 0.18	e : 0.14	= : 0.10	g : 0.10	i : 0.06	] : 0.06	b : 0.06	f : 0.02	
c : 0.26	d : 0.20	e : 0.14	g : 0.14	= : 0.10	i : 0.06	] : 0.06	f : 0.02	
d : 0.22	e : 0.16	g : 0.16	= : 0.10	c : 0.10	] : 0.10	i : 0.06	3 : 0.04	f : 0.04	
e : 0.18	g : 0.16	] : 0.14	= : 0.10	3 : 0.08	d : 0.08	i : 0.06	f : 0.06	c : 0.04	2 : 0.04	h : 0.02	b : 0.02	
g : 0.18	= : 0.10	b : 0.10	3 : 0.10	d : 0.10	c : 0.08	i : 0.06	f : 0.06	] : 0.06	e : 0.06	2 : 0.06	h : 0.02	
g : 0.20	b : 0.14	= : 0.10	i : 0.10	d : 0.10	3 : 0.08	f : 0.06	e : 0.06	c : 0.04	] : 0.04	h : 0.02	a : 0.02	2 : 0.02	
g : 0.18	= : 0.10	i : 0.10	f : 0.08	c : 0.08	d : 0.08	e : 0.08	b : 0.06	2 : 0.04	] : 0.04	3 : 0.04	> : 0.02	a : 0.02	h : 0.02	: : 0.02	4 : 0.02	
g : 0.14	= : 0.10	i : 0.10	f : 0.08	d : 0.08	e : 0.08	2 : 0.06	] : 0.06	c : 0.06	3 : 0.06	> : 0.04	4 : 0.04	b : 0.04	: : 0.02	h : 0.02	
= : 0.10	f : 0.10	g : 0.10	b : 0.08	4 : 0.08	d : 0.08	] : 0.06	i : 0.06	c : 0.06	e : 0.06	> : 0.04	2 : 0.04	h : 0.04	3 : 0.04	a : 0.04	

#score	761.6178503735779
#seq	49
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_CDS_m2_run2.txt

#BEAR
eeeeeeuuuuuuuuuuuueeeee22	chr11:62484385-62484671(-)$1	286	62	87	22.2670
cc[cccvvvvvvvvvvvvvcccccc	chr3:14214344-14214595(-)$1	251	134	159	24.3479
eeee[bbtttttttttttbb]eeee	chr14:75295822-75296136(+)$1	314	30	55	21.6749
"""bbwwwwwwwwwwwwwwbb333e	chr11:763243-763508(+)$1	265	72	97	21.5566
:ddddwwwwwwwwwwwwwwdddd::	chr5:159854621-159854877(+)$1	256	46	71	19.6810
hhhhhhvvvvvvvvvvvvvhhhhhh	chr18:9516975-9517241(+)$1	266	171	196	21.7633
Iffffffuuuuuuuuuuuuffffff	chr7:72397292-72397586(+)$1	294	161	186	21.1037
bbb!!bbwwwwwwwwwwwwwwbb22	chr11:108810872-108811139(+)$1	267	95	120	19.8312
eeccc[attttttttttta]ccc]e	chr10:73581555-73581821(-)$1	266	86	111	23.5576
ccc[ccctttttttttttccc]ccc	chr5:132203145-132203452(+)$1	307	107	132	23.5142
ffffffwwwwwwwwwwwwwwfffff	chrX:16836699-16837086(+)$1	387	225	250	21.4340
f"""cccvvvvvvvvvvvvvccc]f	chr17:27416878-27417193(-)$1	315	72	97	23.6484
[ayyyyyyyyyyyyyyyya]ccc]c	chrX:70617003-70617244(+)$1	241	155	180	19.2772
ddd[a[bbtttttttttttbb]a]d	chr9:33276353-33276652(+)$1	299	121	146	20.9755
(eeeeevvvvvvvvvvvvveeeee6	chr19:13051258-13051545(+)$1	287	111	136	22.5026
ffffffvvvvvvvvvvvvvffffff	chr19:10270607-10270840(-)$1	233	43	68	22.9405
gg!!ccctttttttttttccc22gg	chr9:100774608-100774850(+)$1	242	91	116	23.1671
[eeeeevvvvvvvvvvvvveeeeed	chr12:53421550-53421804(+)$1	254	153	178	23.4526
!ddddbbvvvvvvvvvvvvvbb]dd	chr6:125569366-125569630(+)$1	264	43	68	22.0885
fffffffuuuuuuuuuuuuffffff	chr11:63965278-63965546(+)$1	268	128	153	22.0881
c[a[ccctttttttttttccc]a]c	chr14:102550989-102551204(-)$1	215	68	93	23.9292
hhhhhhhuuuuuuuuuuuuhhhhhh	chr5:32403131-32403483(-)$1	352	313	338	20.6964
bb[bbvvvvvvvvvvvvvbb]bb]d	chr17:27008800-27009068(+)$1	268	159	184	21.4074
c!!cccuuuuuuuuuuuuccc4444	chr17:46928868-46929091(+)$1	223	50	75	23.5326
ccccccwwwwwwwwwwwwwwccc]c	chr19:8531024-8531362(+)$1	338	39	64	22.9226
eeeeevvvvvvvvvvvvveeeee:g	chr20:57015962-57016242(+)$1	280	43	68	21.6856
cc[dddduuuuuuuuuuuudddd]c	chr17:43163773-43164009(+)$1	236	27	52	23.3210
####cccuuuuuuuuuuuuccc777	chr19:10260507-10260743(-)$1	236	36	61	21.9009
gggggggtttttttttttggggggg	chr1:8927951-8928188(-)$1	237	189	214	22.4758
:eeeeevvvvvvvvvvvvveeeee:	chr1:45243679-45243896(+)$1	217	7	32	21.8535
gggggggtttttttttttggggggg	chr1:45218807-45219026(+)$1	219	60	85	22.4758
:ddddyyyyyyyyyyyyyyyydddd	chr17:74392172-74392601(-)$1	429	163	188	18.7922
b[eeeeettttttttttteeeeebb	chr7:99013660-99013932(+)$1	272	217	242	21.7379
!!ddddvvvvvvvvvvvvvdddd22	chr19:8532320-8532564(+)$1	244	127	152	23.7400
b[ddddvvvvvvvvvvvvvdddd]b	chr1:45223631-45223840(+)$1	209	140	165	23.7855
c[dddduuuuuuuuuuuuddddccc	chr1:43632773-43633006(-)$1	233	183	208	22.9066
:ffffffuuuuuuuuuuuuffffff	chr17:72205842-72206055(+)$1	213	6	31	21.4888
ddd[ccctttttttttttcccdddd	chr19:55918182-55918427(-)$1	245	24	49	22.9651
:cccccctttttttttttccc333c	chr11:63965225-63965449(+)$1	224	47	72	22.9213
((dddduuuuuuuuuuuuddddhhh	chr20:47688727-47689015(+)$1	288	238	263	21.0910
ebb[ccctttttttttttcccbb]e	chr1:32504052-32504269(+)$1	217	29	54	22.6547
cc[ddddtttttttttttdddd]cc	chr4:48835314-48835593(+)$1	279	66	91	22.6786
ddd!!bbvvvvvvvvvvvvvbb22d	chr2:232325130-232325345(-)$1	215	104	129	21.9660
:ddddvvvvvvvvvvvvvdddd:cc	chr1:229462496-229462849(-)$1	353	151	176	21.0999
e"""ccctttttttttttccc]eee	chr22:22892164-22892441(-)$1	277	245	270	23.1517
eeeewwwwwwwwwwwwwweeeee]d	chr2:233422493-233422734(+)$1	241	135	160	21.0982
ffffffvvvvvvvvvvvvvffffff	chr8:103299599-103299885(-)$1	286	52	77	22.9405
"""dddduuuuuuuuuuuudddd]f	chr1:38168823-38169045(+)$1	222	151	176	23.1375
gggggggtttttttttttggggggg	chr19:46190699-46190950(-)$1	251	203	228	22.4758
ffddddvvvvvvvvvvvvvdddddd	chr1:109770920-109771153(+)$1	233	174	199	23.3585

#otherMatches

#Seq PSSM
GGAGCUGGAGAAGGAGGAAGCUCAG	chr11:62484385-62484671(-)$1	286	62	87	22.2670
GGUCCAGCAAAAAAGAAAGUGGCCA	chr3:14214344-14214595(-)$1	251	134	159	24.3479
UGUGUGUGUCGUGUGCAAACUCACA	chr14:75295822-75296136(+)$1	314	30	55	21.6749
cccgcccucaccuguccccgccccG	chr11:763243-763508(+)$1	265	72	97	21.5566
acagcccacacuaagaacugcugCC	chr5:159854621-159854877(+)$1	256	46	71	19.6810
UCCAAAUCUCAAACCCAUUUUUGGA	chr18:9516975-9517241(+)$1	266	171	196	21.7633
GGAGGAAGAAGACCAAAUAUUCCUU	chr7:72397292-72397586(+)$1	294	161	186	21.1037
ACCAGUGAUACCAAGAAGAAGCAGG	chr11:108810872-108811139(+)$1	267	95	120	19.8312
GUUCUGUGAUGAGGUGAAAGAGAUG	chr10:73581555-73581821(-)$1	266	86	111	23.5576
UGCCUAUGAAAAUGACAAAUGAGCA	chr5:132203145-132203452(+)$1	307	107	132	23.5142
GGGGGAGAAGCUCGAACAGAUCCCC	chrX:16836699-16837086(+)$1	387	225	250	21.4340
UCUAGCUACAAGCCCUCCAGAGCCA	chr17:27416878-27417193(-)$1	315	72	97	23.6484
ACUAGCCUUAACUCUUCUGCCACUG	chrX:70617003-70617244(+)$1	241	155	180	19.2772
GAUAUGAUGGAAGAUGCAAAUGAAA	chr9:33276353-33276652(+)$1	299	121	146	20.9755
GAGCAUAUCCCUGACCCUGAUGCUA	chr19:13051258-13051545(+)$1	287	111	136	22.5026
UUUGAUAUUUUCUGAAACAAUUAAA	chr19:10270607-10270840(-)$1	233	43	68	22.9405
UAGGAAGAAGAAUUUGGACUUGAUG	chr9:100774608-100774850(+)$1	242	91	116	23.1671
GUAAUUGUAAAACAUGUCGAAUUGC	chr12:53421550-53421804(+)$1	254	153	178	23.4526
GUUCUGUUUUAUUUCUAGCUACAAG	chr6:125569366-125569630(+)$1	264	43	68	22.0885
AGAGCACCGAACCCCAGAUGUGCUC	chr11:63965278-63965546(+)$1	268	128	153	22.0881
AAGAGCUCAACAAAACAAAGCCCAU	chr14:102550989-102551204(-)$1	215	68	93	23.9292
guguuguuucuucuccauugcagca	chr5:32403131-32403483(-)$1	352	313	338	20.6964
GCCGAGACAUGUACACCAUCUGCCA	chr17:27008800-27009068(+)$1	268	159	184	21.4074
AGACUGAAAGAACAAAACCAGAAGA	chr17:46928868-46929091(+)$1	223	50	75	23.5326
UUGUGUUUCUUAAGAUGUUUACAUU	chr19:8531024-8531362(+)$1	338	39	64	22.9226
AGACAGAAACACCAAUAGUGUCUAA	chr20:57015962-57016242(+)$1	280	43	68	21.6856
CUCUUGAACUCAUAAUUAAUCAAAA	chr17:43163773-43164009(+)$1	236	27	52	23.3210
GCAAGUCAAGGCCAGCAAAGACCCU	chr19:10260507-10260743(-)$1	236	36	61	21.9009
CCUGAAGAUUUUAAAACCUUUCAGG	chr1:8927951-8928188(-)$1	237	189	214	22.4758
GAGAUUUUAAACAAAAAACGAUCUA	chr1:45243679-45243896(+)$1	217	7	32	21.8535
GAUGGAAGAGCAAGUCCAUUCCAUC	chr1:45218807-45219026(+)$1	219	60	85	22.4758
ACAGGAAAACCUCAAGAAGACCCUG	chr17:74392172-74392601(-)$1	429	163	188	18.7922
GCAGAGGUAAUUAGUCAGUCUCUCU	chr7:99013660-99013932(+)$1	272	217	242	21.7379
AGACCAAUGCACGUCAAGAUGGUAA	chr19:8532320-8532564(+)$1	244	127	152	23.7400
UGGAAGUCUAUGUGACAUUCUUCGA	chr1:45223631-45223840(+)$1	209	140	165	23.7855
CAUCUCUAAUAGGGGAACGAGGGUA	chr1:43632773-43633006(-)$1	233	183	208	22.9066
GUGUGCUCUCUUUAGCUUAAGUACA	chr17:72205842-72206055(+)$1	213	6	31	21.4888
CUCAGCAUCUUUAGGCCCUGCGGGA	chr19:55918182-55918427(-)$1	245	24	49	22.9651
AGCUGACUUUAUCUCUCUGUCCUAA	chr11:63965225-63965449(+)$1	224	47	72	22.9213
GGGUCAAGAGGUUAAAUAUGAUUUG	chr20:47688727-47689015(+)$1	288	238	263	21.0910
GGAUGUAAUUACCUUUCCUACUCUC	chr1:32504052-32504269(+)$1	217	29	54	22.6547
GAUAAUUUAAUGUUUUCUGAUUUUC	chr4:48835314-48835593(+)$1	279	66	91	22.6786
GGAAAUGGCCAAACAGAAAGCAGCU	chr2:232325130-232325345(-)$1	215	104	129	21.9660
GACUGACAAAUCACCCACCAGUACU	chr1:229462496-229462849(-)$1	353	151	176	21.0999
AUGUGGACUCUUUAUUUUUCCUUAG	chr22:22892164-22892441(-)$1	277	245	270	23.1517
GUACAACUACACUUUUUGGUACUCC	chr2:233422493-233422734(+)$1	241	135	160	21.0982
AGUGAGUUUGUGCUUUUUUCUUAUU	chr8:103299599-103299885(-)$1	286	52	77	22.9405
CAUGGUCAAACCAACUCCAGGCCUG	chr1:38168823-38169045(+)$1	222	151	176	23.1375
GAGAAUAAUAAAGCUCUGUGUUUUU	chr19:46190699-46190950(-)$1	251	203	228	22.4758
UUGUCUUAAUUUUAUUCCUAGACAG	chr1:109770920-109771153(+)$1	233	174	199	23.3585

#DB
((((((............)))))..	chr11:62484385-62484671(-)$1	1	62	87	22.2670
((.(((.............))))))	chr3:14214344-14214595(-)$1	1	134	159	24.3479
((((.((...........)).))))	chr14:75295822-75296136(+)$1	1	30	55	21.6749
...((..............))...)	chr11:763243-763508(+)$1	1	72	97	21.5566
.((((..............))))..	chr5:159854621-159854877(+)$1	1	46	71	19.6810
((((((.............))))))	chr18:9516975-9517241(+)$1	1	171	196	21.7633
)((((((............))))))	chr7:72397292-72397586(+)$1	1	161	186	21.1037
(((..((..............))..	chr11:108810872-108811139(+)$1	1	95	120	19.8312
(((((.(...........).))).)	chr10:73581555-73581821(-)$1	1	86	111	23.5576
(((.(((...........))).)))	chr5:132203145-132203452(+)$1	1	107	132	23.5142
((((((..............)))))	chrX:16836699-16837086(+)$1	1	225	250	21.4340
(...(((.............))).)	chr17:27416878-27417193(-)$1	1	72	97	23.6484
.(................).))).)	chrX:70617003-70617244(+)$1	1	155	180	19.2772
(((.(.((...........)).).)	chr9:33276353-33276652(+)$1	1	121	146	20.9755
.(((((.............))))).	chr19:13051258-13051545(+)$1	1	111	136	22.5026
((((((.............))))))	chr19:10270607-10270840(-)$1	1	43	68	22.9405
((..(((...........)))..))	chr9:100774608-100774850(+)$1	1	91	116	23.1671
.(((((.............))))))	chr12:53421550-53421804(+)$1	1	153	178	23.4526
.((((((.............)).))	chr6:125569366-125569630(+)$1	1	43	68	22.0885
(((((((............))))))	chr11:63965278-63965546(+)$1	1	128	153	22.0881
(.(.(((...........))).).)	chr14:102550989-102551204(-)$1	1	68	93	23.9292
(((((((............))))))	chr5:32403131-32403483(-)$1	1	313	338	20.6964
((.((.............)).)).)	chr17:27008800-27009068(+)$1	1	159	184	21.4074
(..(((............)))....	chr17:46928868-46929091(+)$1	1	50	75	23.5326
((((((..............))).)	chr19:8531024-8531362(+)$1	1	39	64	22.9226
(((((.............))))).(	chr20:57015962-57016242(+)$1	1	43	68	21.6856
((.((((............)))).)	chr17:43163773-43164009(+)$1	1	27	52	23.3210
....(((............)))...	chr19:10260507-10260743(-)$1	1	36	61	21.9009
(((((((...........)))))))	chr1:8927951-8928188(-)$1	1	189	214	22.4758
.(((((.............))))).	chr1:45243679-45243896(+)$1	1	7	32	21.8535
(((((((...........)))))))	chr1:45218807-45219026(+)$1	1	60	85	22.4758
.((((................))))	chr17:74392172-74392601(-)$1	1	163	188	18.7922
(.(((((...........)))))))	chr7:99013660-99013932(+)$1	1	217	242	21.7379
..((((.............))))..	chr19:8532320-8532564(+)$1	1	127	152	23.7400
(.((((.............)))).)	chr1:45223631-45223840(+)$1	1	140	165	23.7855
(.((((............)))))))	chr1:43632773-43633006(-)$1	1	183	208	22.9066
.((((((............))))))	chr17:72205842-72206055(+)$1	1	6	31	21.4888
(((.(((...........)))))))	chr19:55918182-55918427(-)$1	1	24	49	22.9651
.((((((...........)))...)	chr11:63965225-63965449(+)$1	1	47	72	22.9213
..((((............)))))))	chr20:47688727-47689015(+)$1	1	238	263	21.0910
(((.(((...........))))).)	chr1:32504052-32504269(+)$1	1	29	54	22.6547
((.((((...........)))).))	chr4:48835314-48835593(+)$1	1	66	91	22.6786
(((..((.............))..)	chr2:232325130-232325345(-)$1	1	104	129	21.9660
.((((.............)))).((	chr1:229462496-229462849(-)$1	1	151	176	21.0999
(...(((...........))).)))	chr22:22892164-22892441(-)$1	1	245	270	23.1517
((((..............))))).)	chr2:233422493-233422734(+)$1	1	135	160	21.0982
((((((.............))))))	chr8:103299599-103299885(-)$1	1	52	77	22.9405
...((((............)))).)	chr1:38168823-38169045(+)$1	1	151	176	23.1375
(((((((...........)))))))	chr19:46190699-46190950(-)$1	1	203	228	22.4758
))((((.............))))((	chr1:109770920-109771153(+)$1	1	174	199	23.3585

#PSSM
c : 0.16	e : 0.14	: : 0.12	f : 0.12	b : 0.08	g : 0.08	d : 0.06	" : 0.04	h : 0.04	[ : 0.04	( : 0.04	! : 0.04	I : 0.02	# : 0.02	
e : 0.16	d : 0.14	f : 0.14	c : 0.12	" : 0.08	g : 0.08	[ : 0.08	b : 0.06	h : 0.04	! : 0.04	a : 0.02	# : 0.02	( : 0.02	
d : 0.23	e : 0.16	f : 0.12	[ : 0.08	" : 0.08	c : 0.08	g : 0.06	h : 0.04	b : 0.04	! : 0.04	y : 0.02	a : 0.02	# : 0.02	
d : 0.23	e : 0.16	f : 0.12	c : 0.10	[ : 0.10	! : 0.06	g : 0.06	b : 0.04	h : 0.04	" : 0.04	y : 0.02	# : 0.02	
c : 0.25	d : 0.23	e : 0.12	f : 0.12	g : 0.06	b : 0.04	h : 0.04	! : 0.04	[ : 0.02	y : 0.02	a : 0.02	w : 0.02	
c : 0.23	d : 0.16	f : 0.12	e : 0.10	b : 0.08	w : 0.06	v : 0.06	g : 0.06	h : 0.04	[ : 0.04	y : 0.04	
v : 0.25	c : 0.18	b : 0.10	w : 0.10	u : 0.08	f : 0.06	d : 0.06	g : 0.06	y : 0.04	a : 0.02	h : 0.02	e : 0.02	
v : 0.32	t : 0.27	u : 0.21	w : 0.12	y : 0.04	b : 0.02	
v : 0.32	t : 0.30	u : 0.21	w : 0.12	y : 0.04	
v : 0.32	t : 0.30	u : 0.21	w : 0.12	y : 0.04	
v : 0.32	t : 0.30	u : 0.21	w : 0.12	y : 0.04	
v : 0.32	t : 0.30	u : 0.21	w : 0.12	y : 0.04	
v : 0.32	t : 0.30	u : 0.21	w : 0.12	y : 0.04	
v : 0.32	t : 0.30	u : 0.21	w : 0.12	y : 0.04	
v : 0.32	t : 0.30	u : 0.21	w : 0.12	y : 0.04	
v : 0.32	t : 0.30	u : 0.21	w : 0.12	y : 0.04	
v : 0.32	t : 0.30	u : 0.21	w : 0.12	y : 0.04	
v : 0.32	t : 0.30	u : 0.21	w : 0.12	y : 0.04	
v : 0.25	c : 0.16	u : 0.14	w : 0.10	e : 0.08	d : 0.08	g : 0.06	b : 0.04	a : 0.04	t : 0.02	y : 0.02	
c : 0.19	d : 0.19	e : 0.14	f : 0.10	b : 0.08	w : 0.06	v : 0.06	g : 0.06	h : 0.04	] : 0.04	y : 0.02	
c : 0.27	d : 0.19	e : 0.14	f : 0.12	b : 0.08	g : 0.06	] : 0.04	h : 0.04	w : 0.02	y : 0.02	
d : 0.23	e : 0.16	c : 0.12	f : 0.12	b : 0.10	] : 0.08	g : 0.06	3 : 0.04	h : 0.04	2 : 0.02	4 : 0.02	
e : 0.18	d : 0.16	c : 0.14	f : 0.12	h : 0.06	b : 0.06	g : 0.06	3 : 0.04	a : 0.04	2 : 0.04	] : 0.04	4 : 0.02	7 : 0.02	: : 0.02	
] : 0.23	f : 0.12	c : 0.10	e : 0.10	2 : 0.08	g : 0.08	d : 0.08	h : 0.06	3 : 0.04	: : 0.04	4 : 0.02	7 : 0.02	b : 0.02	
c : 0.19	d : 0.18	f : 0.16	e : 0.10	g : 0.10	2 : 0.06	h : 0.06	: : 0.04	b : 0.04	6 : 0.02	4 : 0.02	7 : 0.02	

#score	1111.065026749512
#seq	50
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_transcript_m2_run2.txt

#BEAR
dd!!gggggggooooooggggggg]ddd	chr6:153135191-153135453(-)$1	262	153	181	13.2040
ffccc"""cccooooooccc333ccc33	chr7:140531547-140531867(-)$1	320	82	110	17.1084
ddd!!bb[cccooooooccc]bb22ddd	chr6:166790731-166791033(-)$1	302	60	88	13.4493
""ccc[a[cccooooooccc]a22ccc5	chr21:39436235-39436478(-)$1	243	62	90	15.2574
ee[dddd[cccooooooccc]dddd22e	chr9:133651422-133651712(+)$1	290	165	193	13.7237
&&ffffffcccooooooccc22ffffff	chr12:32135093-32135387(+)$1	294	33	61	13.1784
eeee####cccooooooccc4444eeee	chr5:53634578-53634809(+)$1	231	111	139	15.2179
###dddd[aooooooadddd4444gggg	chr3:6616185-6616442(+)$1	257	208	236	11.4975
ccc[gggggggooooooggggggg]ccc	chr8:91384489-91384784(+)$1	295	115	143	13.8789
d:ffffffcccooooooccc]ffffff:	chr15:27390099-27390366(+)$1	267	130	158	11.8128
iiiiiii[cccooooooccc]iiiiiii	chr7:43670434-43670727(-)$1	293	260	288	15.9181
bb[ccc"""bboooooobb22cccbb33	chr4:104067020-104067291(-)$1	271	88	116	13.5324
!ccc[ffffffooooooffffff]ccc4	chr12:132612234-132612499(+)$1	265	16	44	12.4772
=========!!ccclllccc333=====	chr1:41633037-41633276(-)$1	239	166	194	11.1272
ccc[ccc!!cccnnnnnccc333ccccc	chr10:74272809-74273077(-)$1	268	193	221	12.2614
""ccca!!cccooooooccc22a]ccc2	chr6:97692418-97692731(-)$1	313	161	189	16.6618
bb[ccc####cccmmmmccc22ccc333	chr11:14622576-14622839(-)$1	263	159	187	10.5676
:==========oooooo==========:	chr3:37366018-37366240(+)$1	222	170	198	12.8502
cc####eeeeeooooooeeeee333ccc	chr11:65267976-65268181(+)$1	205	27	55	12.8152
"bb[ccc[cccooooooccc22ccc333	chr7:119346495-119346707(-)$1	212	140	168	16.5528
cc!!ccc[aooooooa]ccc22ccca]=	chr2:109381586-109381827(+)$1	241	172	200	13.6874
:::ccc!!cccooooooccc22ccca!!	chr8:68099433-68099753(+)$1	320	166	194	13.4304
]bbccc[ddddoooooodddd]ccc:ff	chr7:87511958-87512225(+)$1	267	206	234	11.7748
%%eeeee[cccooooooccc]eeeeebb	chr8:90729911-90730264(-)$1	353	188	216	12.7410
hhhccc[ddddoooooodddd22ccc]h	chr1:167749837-167750160(+)$1	323	259	287	13.2482
cceeeeeddddoooooodddd22eeeee	chr21:47651642-47651959(+)$1	317	129	157	12.1064
dd!!bb!!cccooooooccc22bbdddd	chr3:37367159-37367385(+)$1	226	131	159	14.7662
##ggggggg[aooooooa]ggggggg33	chr4:759929-760202(-)$1	273	39	67	14.0210
ccc$$$$$cccooooooccc333ccc]g	chrX:130950192-130950476(-)$1	284	101	129	16.2859
dddd####cccnnnnnccc4444ddddG	chr10:49561291-49561562(+)$1	271	116	144	9.7052
!bb!!ccc[bboooooobb]cccbb22b	chr7:119526818-119527069(-)$1	251	144	172	11.7137
ggg"""eeeeeooooooeeeeegggggg	chr11:62284967-62285219(-)$1	252	45	73	12.4115
!a[gggggggaooooooa]ggggggga2	chr19:41770836-41771103(+)$1	267	47	75	13.7107
eeeea####bboooooobb4444a]eee	chr6:10940542-10940784(+)$1	242	98	126	13.3707
ccc$$$$$cccooooooccc55555ccc	chr15:57286826-57287080(+)$1	254	203	231	11.5775
ee[bb[addddoooooodddd]a]bb]e	chr5:65301113-65301369(+)$1	256	22	50	12.0979
dddd[dddd[aooooooadddd]dddda	chr1:50993750-50994013(-)$1	263	218	246	11.7067
====cccddddoooooodddd]ccc]==	chr22:48229484-48229827(+)$1	343	228	256	13.6121
hhhhhhh[cccooooooccc]hhhhhhh	chr1:16797641-16797917(-)$1	276	64	92	13.1606
hhhhhhhhcccooooooccc22hhhhhh	chr7:120849263-120849526(+)$1	263	221	249	13.2942
!cccgggggggooooooggggggg]ccc	chr8:41887709-41888040(-)$1	331	230	258	13.9023
:dddd"""cccooooooccc]ddddccc	chr7:22686804-22687091(-)$1	287	190	218	13.9960
b[ccc"""cccooooooccc333ccc]b	chr1:16799861-16800113(-)$1	252	182	210	16.9832
c[eeeee[cccooooooccc]eeeee]c	chr21:15413937-15414198(+)$1	261	73	101	14.4707
&ffffff[cccooooooccc22ffffff	chr1:41632704-41632947(-)$1	243	40	68	14.1070
a"""ccc!!bboooooobb22ccc333a	chr13:98015324-98015614(+)$1	290	97	125	14.2292
gggggg[cccooooooccc333gggggg	chr15:56414694-56415023(-)$1	329	1	29	14.2257

#otherMatches

#Seq PSSM
UGCAAGGGAAUGUGAAGAUUUUCUCCAU	chr6:153135191-153135453(-)$1	262	153	181	13.2040
GAGCUAGAUUCUUACAUGAAGGGAGCCA	chr7:140531547-140531867(-)$1	320	82	110	17.1084
UAACAUUACCAUAAUUUUGGAAAAAUUA	chr6:166790731-166791033(-)$1	302	60	88	13.4493
aaaagagggucacugaagauguaacuua	chr21:39436235-39436478(-)$1	243	62	90	15.2574
AGCUGGCCUUGGGAUAACAGAGCUAAAC	chr9:133651422-133651712(+)$1	290	165	193	13.7237
AAAUUAAAAUCAAUAAAGAUCUUUUGAU	chr12:32135093-32135387(+)$1	294	33	61	13.1784
UUUUGAAGGCUGGGCAAAGUAAAAAAAG	chr5:53634578-53634809(+)$1	231	111	139	15.2179
uggucuuacguaaaagaggaaggaaagg	chr3:6616185-6616442(+)$1	257	208	236	11.4975
cagaggaaguggcacaacauuuuuccug	chr8:91384489-91384784(+)$1	295	115	143	13.8789
ucuguuuccaaccaacauugugagacaa	chr15:27390099-27390366(+)$1	267	130	158	11.8128
uacauuucacucuaacugguaaaaugua	chr7:43670434-43670727(-)$1	293	260	288	15.9181
CUACCAAAAUCGUGAGUGAGAUGGAGCA	chr4:104067020-104067291(-)$1	271	88	116	13.5324
accuagaacuuugagguaaguuugggga	chr12:132612234-132612499(+)$1	265	16	44	12.4772
ccuuuucaaacucuuccagaaaguugaa	chr1:41633037-41633276(-)$1	239	166	194	11.1272
cugagguggaaggauugcuuaaagccca	chr10:74272809-74273077(-)$1	268	193	221	12.2614
aggagcaaggaauccaguccaggucuca	chr6:97692418-97692731(-)$1	313	161	189	16.6618
UCCUGAAAUAGCCAACUGGCAGUCACCU	chr11:14622576-14622839(-)$1	263	159	187	10.5676
AUUCAUAUUUUGAAUGAGGAAUAUGAAA	chr3:37366018-37366240(+)$1	222	170	198	12.8502
CCAGGAGCCAGUGCGAUUUGGUGAAGGA	chr11:65267976-65268181(+)$1	205	27	55	12.8152
aggaaguaccuaaguugaggccgcucua	chr7:119346495-119346707(-)$1	212	140	168	16.5528
UUCAGAGACAAGCAAGGCUCCAAAGAGC	chr2:109381586-109381827(+)$1	241	172	200	13.6874
caaauagaccaguugaauggaauaugga	chr8:68099433-68099753(+)$1	320	166	194	13.4304
agugguaguguaacacgauauagccacc	chr7:87511958-87512225(+)$1	267	206	234	11.7748
auucuguauucuauguugaaaacagacu	chr8:90729911-90730264(-)$1	353	188	216	12.7410
aagaugcuaauuuuuauguuauauauau	chr1:167749837-167750160(+)$1	323	259	287	13.2482
cugaguuagcuagagaaaguugagacuu	chr21:47651642-47651959(+)$1	317	129	157	12.1064
AAAUUAAGAGCAUGAAGGCUGAUAUUGA	chr3:37367159-37367385(+)$1	226	131	159	14.7662
GAAGGUGACUCAGAACCGUGUUGCCUGG	chr4:759929-760202(-)$1	273	39	67	14.0210
UGGUAAAGCAUCCCUUAAUGAUCCCAGA	chrX:130950192-130950476(-)$1	284	101	129	16.2859
guguaguauuggcagacagauagacaca	chr10:49561291-49561562(+)$1	271	116	144	9.7052
acuaauaGAgcaaauagguacugagagu	chr7:119526818-119527069(-)$1	251	144	172	11.7137
UUUCAGGGGGUGUCAGUGCCCCAGACAU	chr11:62284967-62285219(-)$1	252	45	73	12.4115
ACACUCAGUGCAGGGGGGACACUGGGGG	chr19:41770836-41771103(+)$1	267	47	75	13.7107
ccaggauauggaaucagccuaagcacug	chr6:10940542-10940784(+)$1	242	98	126	13.3707
aagggaaauuuauaucagaagaaaacuu	chr15:57286826-57287080(+)$1	254	203	231	11.5775
gaguugccaucaguugagauguggaaau	chr5:65301113-65301369(+)$1	256	22	50	12.0979
ggcugagguaggaggaucacuugagccc	chr1:50993750-50994013(-)$1	263	218	246	11.7067
gaggGCUUGUUCCAGACAACAUGGUGcc	chr22:48229484-48229827(+)$1	343	228	256	13.6121
auucuugaaaugaauaaauuauaagagu	chr1:16797641-16797917(-)$1	276	64	92	13.1606
UUUUAUAGUCAGCUUUAUGAAACUAUAA	chr7:120849263-120849526(+)$1	263	221	249	13.2942
agagacagauccccagugaucuguguuc	chr8:41887709-41888040(-)$1	331	230	258	13.9023
acccaaaaggcagaacggccaugggccc	chr7:22686804-22687091(-)$1	287	190	218	13.9960
caucuaugucuggaaggggaagaggaag	chr1:16799861-16800113(-)$1	252	182	210	16.9832
agauggggaauagauuaauuguccauau	chr21:15413937-15414198(+)$1	261	73	101	14.4707
aauacuaagaaaccauauuccguaguau	chr1:41632704-41632947(-)$1	243	40	68	14.1070
gacauccaagcagagaggugaggagggc	chr13:98015324-98015614(+)$1	290	97	125	14.2292
ccugugggccuguggugguggacacggg	chr15:56414694-56415023(-)$1	329	1	29	14.2257

#DB
((..(((((((......))))))).)))	chr6:153135191-153135453(-)$1	1	153	181	13.2040
(((((...(((......)))...)))..	chr7:140531547-140531867(-)$1	1	82	110	17.1084
(((..((.(((......))).))..)))	chr6:166790731-166791033(-)$1	1	60	88	13.4493
..(((.(.(((......))).)..))).	chr21:39436235-39436478(-)$1	1	62	90	15.2574
((.((((.(((......))).))))..)	chr9:133651422-133651712(+)$1	1	165	193	13.7237
..(((((((((......)))..))))))	chr12:32135093-32135387(+)$1	1	33	61	13.1784
((((....(((......)))....))))	chr5:53634578-53634809(+)$1	1	111	139	15.2179
...((((.(......)))))....))))	chr3:6616185-6616442(+)$1	1	208	236	11.4975
(((.(((((((......))))))).)))	chr8:91384489-91384784(+)$1	1	115	143	13.8789
).(((((((((......))).)))))).	chr15:27390099-27390366(+)$1	1	130	158	11.8128
(((((((.(((......))).)))))))	chr7:43670434-43670727(-)$1	1	260	288	15.9181
((.(((...((......))..)))))..	chr4:104067020-104067291(-)$1	1	88	116	13.5324
.(((.((((((......)))))).))).	chr12:132612234-132612499(+)$1	1	16	44	12.4772
(((((((((..(((...)))...)))))	chr1:41633037-41633276(-)$1	1	166	194	11.1272
(((.(((..(((.....)))...)))))	chr10:74272809-74273077(-)$1	1	193	221	12.2614
..((((..(((......)))..).))).	chr6:97692418-97692731(-)$1	1	161	189	16.6618
((.(((....(((....)))..)))...	chr11:14622576-14622839(-)$1	1	159	187	10.5676
.((((((((((......)))))))))).	chr3:37366018-37366240(+)$1	1	170	198	12.8502
((....(((((......)))))...)))	chr11:65267976-65268181(+)$1	1	27	55	12.8152
.((.(((.(((......)))..)))...	chr7:119346495-119346707(-)$1	1	140	168	16.5528
((..(((.(......).)))..)))).)	chr2:109381586-109381827(+)$1	1	172	200	13.6874
...(((..(((......)))..)))(..	chr8:68099433-68099753(+)$1	1	166	194	13.4304
.))(((.((((......)))).))).((	chr7:87511958-87512225(+)$1	1	206	234	11.7748
..(((((.(((......))).)))))))	chr8:90729911-90730264(-)$1	1	188	216	12.7410
((((((.((((......))))..))).)	chr1:167749837-167750160(+)$1	1	259	287	13.2482
))(((((((((......))))..)))))	chr21:47651642-47651959(+)$1	1	129	157	12.1064
((..((..(((......)))..))))))	chr3:37367159-37367385(+)$1	1	131	159	14.7662
..(((((((.(......).)))))))..	chr4:759929-760202(-)$1	1	39	67	14.0210
(((.....(((......)))...))).)	chrX:130950192-130950476(-)$1	1	101	129	16.2859
((((....(((.....)))....)))))	chr10:49561291-49561562(+)$1	1	116	144	9.7052
.((..(((.((......)).)))))..)	chr7:119526818-119527069(-)$1	1	144	172	11.7137
(((...(((((......)))))))))))	chr11:62284967-62285219(-)$1	1	45	73	12.4115
.(.((((((((......).)))))))).	chr19:41770836-41771103(+)$1	1	47	75	13.7107
(((((....((......))....).)))	chr6:10940542-10940784(+)$1	1	98	126	13.3707
(((.....(((......))).....)))	chr15:57286826-57287080(+)$1	1	203	231	11.5775
((.((.(((((......)))).).)).)	chr5:65301113-65301369(+)$1	1	22	50	12.0979
((((.((((.(......))))).)))))	chr1:50993750-50994013(-)$1	1	218	246	11.7067
(((((((((((......)))).))).))	chr22:48229484-48229827(+)$1	1	228	256	13.6121
(((((((.(((......))).)))))))	chr1:16797641-16797917(-)$1	1	64	92	13.1606
(((((((((((......)))..))))))	chr7:120849263-120849526(+)$1	1	221	249	13.2942
.((((((((((......))))))).)))	chr8:41887709-41888040(-)$1	1	230	258	13.9023
.((((...(((......))).))))(((	chr7:22686804-22687091(-)$1	1	190	218	13.9960
(.(((...(((......)))...))).)	chr1:16799861-16800113(-)$1	1	182	210	16.9832
(.(((((.(((......))).))))).)	chr21:15413937-15414198(+)$1	1	73	101	14.4707
.((((((.(((......)))..))))))	chr1:41632704-41632947(-)$1	1	40	68	14.1070
(...(((..((......))..)))...)	chr13:98015324-98015614(+)$1	1	97	125	14.2292
((((((.(((......)))...))))))	chr15:56414694-56415023(-)$1	1	1	29	14.2257

#PSSM
c : 0.17	d : 0.12	e : 0.08	! : 0.08	" : 0.06	b : 0.06	: : 0.06	h : 0.06	& : 0.04	# : 0.04	= : 0.04	g : 0.04	f : 0.02	i : 0.02	] : 0.02	% : 0.02	a : 0.02	
c : 0.19	d : 0.12	b : 0.10	e : 0.08	" : 0.06	= : 0.06	h : 0.06	f : 0.04	# : 0.04	: : 0.04	g : 0.04	[ : 0.04	& : 0.02	i : 0.02	% : 0.02	a : 0.02	
c : 0.21	[ : 0.10	e : 0.10	d : 0.08	! : 0.06	f : 0.06	= : 0.06	b : 0.06	h : 0.06	g : 0.06	# : 0.04	i : 0.02	: : 0.02	" : 0.02	
c : 0.23	! : 0.10	d : 0.10	e : 0.10	f : 0.06	[ : 0.06	= : 0.06	g : 0.06	$ : 0.04	" : 0.04	h : 0.04	i : 0.02	# : 0.02	b : 0.02	
c : 0.29	g : 0.12	d : 0.06	f : 0.06	# : 0.06	e : 0.06	! : 0.04	[ : 0.04	= : 0.04	b : 0.04	$ : 0.04	h : 0.04	i : 0.02	" : 0.02	a : 0.02	
c : 0.23	g : 0.12	" : 0.08	f : 0.08	# : 0.08	d : 0.06	e : 0.06	b : 0.04	[ : 0.04	= : 0.04	$ : 0.04	h : 0.04	i : 0.02	a : 0.02	
c : 0.12	g : 0.10	e : 0.10	" : 0.08	f : 0.08	# : 0.08	d : 0.06	! : 0.06	[ : 0.06	a : 0.04	= : 0.04	$ : 0.04	h : 0.04	b : 0.02	i : 0.02	
[ : 0.23	d : 0.12	g : 0.10	! : 0.10	" : 0.08	# : 0.08	f : 0.06	= : 0.04	e : 0.04	$ : 0.04	c : 0.04	h : 0.02	
c : 0.48	d : 0.12	g : 0.10	a : 0.04	= : 0.04	! : 0.04	# : 0.04	e : 0.04	" : 0.02	f : 0.02	[ : 0.02	
c : 0.51	d : 0.10	g : 0.08	b : 0.08	o : 0.04	e : 0.04	[ : 0.04	f : 0.02	! : 0.02	# : 0.02	= : 0.02	
c : 0.51	d : 0.10	b : 0.08	g : 0.06	o : 0.06	a : 0.06	e : 0.04	f : 0.02	! : 0.02	= : 0.02	
o : 0.91	c : 0.06	n : 0.02	
o : 0.91	c : 0.04	n : 0.04	
o : 0.91	n : 0.04	c : 0.02	m : 0.02	
o : 0.91	n : 0.04	l : 0.02	m : 0.02	
o : 0.87	a : 0.04	n : 0.04	l : 0.02	m : 0.02	
o : 0.85	c : 0.04	d : 0.02	l : 0.02	n : 0.02	m : 0.02	] : 0.02	
c : 0.57	d : 0.12	b : 0.08	g : 0.06	a : 0.06	e : 0.04	f : 0.02	= : 0.02	
c : 0.57	d : 0.14	b : 0.08	g : 0.06	e : 0.04	] : 0.04	f : 0.02	= : 0.02	
c : 0.53	d : 0.14	g : 0.10	2 : 0.04	e : 0.04	4 : 0.04	f : 0.02	= : 0.02	] : 0.02	3 : 0.02	
2 : 0.23	] : 0.19	3 : 0.12	d : 0.12	g : 0.10	4 : 0.08	e : 0.04	f : 0.02	= : 0.02	c : 0.02	5 : 0.02	
2 : 0.23	3 : 0.12	g : 0.10	4 : 0.08	e : 0.08	d : 0.06	c : 0.06	] : 0.06	f : 0.04	b : 0.02	a : 0.02	i : 0.02	= : 0.02	5 : 0.02	h : 0.02	
c : 0.19	g : 0.14	3 : 0.12	f : 0.08	4 : 0.08	2 : 0.06	b : 0.04	d : 0.04	a : 0.04	e : 0.04	h : 0.04	i : 0.02	= : 0.02	5 : 0.02	] : 0.02	
c : 0.27	g : 0.14	d : 0.08	f : 0.06	] : 0.06	e : 0.06	2 : 0.04	4 : 0.04	= : 0.04	b : 0.04	h : 0.04	i : 0.02	3 : 0.02	a : 0.02	5 : 0.02	
c : 0.29	d : 0.10	g : 0.10	] : 0.08	e : 0.08	f : 0.06	b : 0.06	= : 0.04	3 : 0.04	h : 0.04	2 : 0.02	i : 0.02	5 : 0.02	
c : 0.27	d : 0.10	e : 0.10	g : 0.10	f : 0.06	3 : 0.06	2 : 0.04	b : 0.04	= : 0.04	a : 0.04	h : 0.04	i : 0.02	: : 0.02	] : 0.02	
c : 0.19	3 : 0.12	] : 0.12	d : 0.10	f : 0.08	e : 0.06	g : 0.06	= : 0.06	2 : 0.04	h : 0.04	i : 0.02	! : 0.02	b : 0.02	a : 0.02	
c : 0.14	3 : 0.10	e : 0.10	g : 0.08	d : 0.06	f : 0.06	= : 0.06	b : 0.06	h : 0.06	: : 0.04	2 : 0.04	a : 0.04	5 : 0.02	i : 0.02	4 : 0.02	! : 0.02	G : 0.02	

#score	633.4306259901215
#seq	47
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_transcript_m3_run1.txt

#BEAR
eeeeeqqqqqqqqeeeee	chr3:160134046-160134300(+)$1	254	174	192	14.0302
dddddqqqqqqqqdddd]	chr8:59542509-59542786(-)$1	277	255	273	16.1526
fddddqqqqqqqqdddd0	chr2:55253888-55254152(-)$1	264	160	178	15.5054
[ddddqqqqqqqqdddd]	chr11:65267972-65268176(+)$1	204	134	152	16.6869
:ddddqqqqqqqqdddd:	chr7:119435329-119435568(-)$1	239	207	225	14.5249
[ddddqqqqqqqqdddd]	chrX:152956449-152956715(+)$1	266	92	110	16.6869
[ddddqqqqqqqqdddd]	chr11:65268029-65268233(+)$1	204	77	95	16.6869
[ddddqqqqqqqqdddd]	chr11:65267960-65268172(+)$1	212	146	164	16.6869
[ddddqqqqqqqqdddd]	chr11:65267922-65268128(+)$1	206	184	202	16.6869
ffcccqqqqqqqqccc22	chr3:6629418-6629689(+)$1	271	195	213	13.4155
bddddqqqqqqqqdddd]	chr14:102267445-102267759(+)$1	314	7	25	16.0709
:ddddqqqqqqqqdddd:	chr7:120884436-120884699(+)$1	263	3	21	14.5249
:ddddqqqqqqqqdddd:	chr5:29002343-29002589(+)$1	246	140	158	14.5249
ddd[aqqqqqqqqadddd	chr5:53629435-53629692(+)$1	257	132	150	14.5138
!!cccqqqqqqqqccc22	chr18:75699529-75699811(-)$1	282	191	209	13.9767
:ddddqqqqqqqqdddd:	chr11:65267588-65267796(+)$1	208	175	193	14.5249
[ddddqqqqqqqqdddd]	chr11:65268069-65268272(+)$1	203	37	55	16.6869
=====qqqqqqqq=====	chr11:65269341-65269545(+)$1	204	169	187	13.5888
gggggqqqqqqqqggggg	chr16:20696128-20696405(+)$1	277	253	271	13.3471
:ddddqqqqqqqqdddd:	chr11:65267612-65267819(+)$1	207	151	169	14.5249
eeeeeqqqqqqqqeeeee	chr16:20687642-20687893(+)$1	251	53	71	14.0302
:ddddqqqqqqqqdddd:	chr11:65266526-65266731(+)$1	205	0	18	14.5249
[ddddqqqqqqqqdddd]	chr11:65268023-65268225(+)$1	202	83	101	16.6869
gggggqqqqqqqqggggg	chr7:76221967-76222209(+)$1	242	8	26	13.3471
eddddqqqqqqqqdddd:	chr11:62284728-62285015(-)$1	287	85	103	15.2708
[ddddqqqqqqqqdddd]	chr11:65267953-65268160(+)$1	207	153	171	16.6869
eeeeeqqqqqqqqeeeee	chr7:119433994-119434271(-)$1	277	9	27	14.0302
""cccqqqqqqqqccc33	chr8:91265500-91265804(+)$1	304	210	228	14.0617
eeeeeqqqqqqqqeeeee	chr7:119546639-119546898(-)$1	259	152	170	14.0302
eecccqqqqqqqqccc]e	chr5:126237475-126237764(-)$1	289	196	214	13.7581
ee[bbqqqqqqqqbbeee	chr11:62286369-62286605(-)$1	236	203	221	12.4263
$ddddqqqqqqqqdddd>	chr18:9256905-9257166(+)$1	261	105	123	15.7538
[ddddqqqqqqqqdddd]	chr11:65267976-65268183(+)$1	207	130	148	16.6869
[ddddqqqqqqqqdddd]	chr11:65267928-65268136(+)$1	208	178	196	16.6869
gggggqqqqqqqqggggg	chr6:147617271-147617572(+)$1	301	269	287	13.3471
cccccqqqqqqqqccc]c	chr11:2677206-2677508(-)$1	302	2	20	13.5660
[ddddqqqqqqqqdddd]	chr7:120897349-120897597(+)$1	248	209	227	16.6869
[ddddqqqqqqqqdddd]	chr11:65267991-65268195(+)$1	204	115	133	16.6869
:ddddqqqqqqqqddddf	chr19:21630265-21630583(-)$1	318	117	135	14.9876
eeeeeqqqqqqqqeeeee	chr8:91269569-91269829(+)$1	260	51	69	14.0302
"ddddqqqqqqqqdddd5	chr11:62294486-62294761(-)$1	275	53	71	15.5941
[ddddqqqqqqqqdddd]	chr11:65267983-65268191(+)$1	208	123	141	16.6869
!!cccqqqqqqqqccc22	chr17:80420519-80420745(+)$1	226	114	132	13.9767
:ddddqqqqqqqqdddd:	chr5:53635617-53635872(+)$1	255	88	106	14.5249
=====qqqqqqqq=====	chr11:65269426-65269632(+)$1	206	84	102	13.5888
eeeeeqqqqqqqqeeeee	chr7:120887413-120887668(+)$1	255	91	109	14.0302
[ddddqqqqqqqqdddd]	chr11:65268050-65268254(+)$1	204	56	74	16.6869
gggggqqqqqqqqggggg	chr1:41634973-41635254(-)$1	281	136	154	13.3471
[ddddqqqqqqqqdddd]	chr11:65268057-65268265(+)$1	208	49	67	16.6869
eeeeeqqqqqqqqeeeee	chr9:100700249-100700509(-)$1	260	168	186	14.0302
[ddddqqqqqqqqdddd]	chr11:65268026-65268229(+)$1	203	80	98	16.6869
eeeeeqqqqqqqqeeeee	chr17:68026648-68026933(-)$1	285	189	207	14.0302
[ddddqqqqqqqqdddd]	chr11:65267995-65268201(+)$1	206	111	129	16.6869
cddddqqqqqqqqdddd]	chr4:32011664-32011931(+)$1	267	102	120	16.2786
[ddddqqqqqqqqdddd3	chr1:203766812-203767065(+)$1	253	139	157	16.5135
ggggaqqqqqqqqa]ggg	chr11:65268599-65268824(+)$1	225	73	91	13.2953
##cccqqqqqqqqcccdd	chr4:770468-770771(-)$1	303	135	153	13.8795
eeeeeqqqqqqqqeeeee	chr5:145868574-145868867(+)$1	293	54	72	14.0302
ff!!aqqqqqqqqa333f	chr7:119425932-119426183(-)$1	251	146	164	12.6686
ggggaqqqqqqqqa]ggg	chr11:65268624-65268837(+)$1	213	48	66	13.2953

#otherMatches

#Seq PSSM
AUCAGUGUUUAUUUUGGU	chr3:160134046-160134300(+)$1	254	174	192	14.0302
ucucuucugucucagagu	chr8:59542509-59542786(-)$1	277	255	273	16.1526
AACUUGGAAAGUAAAGUG	chr2:55253888-55254152(-)$1	264	160	178	15.5054
AAUUUGGUGAUGAAGGUA	chr11:65267972-65268176(+)$1	204	134	152	16.6869
cccgcaguuuuagguggc	chr7:119435329-119435568(-)$1	239	207	225	14.5249
GGGUCUAGGGGGCGGCUG	chrX:152956449-152956715(+)$1	266	92	110	16.6869
AAUUUGGUGAUGAAGGUA	chr11:65268029-65268233(+)$1	204	77	95	16.6869
AAUUUGGUGAUGAAGGUA	chr11:65267960-65268172(+)$1	212	146	164	16.6869
AAUUUGGUGAUGAAGGUA	chr11:65267922-65268128(+)$1	206	184	202	16.6869
acuguaaaccucagcauu	chr3:6629418-6629689(+)$1	271	195	213	13.4155
cagaaggaauaaguucua	chr14:102267445-102267759(+)$1	314	7	25	16.0709
AGUACUAAAAAUCGUAUA	chr7:120884436-120884699(+)$1	263	3	21	14.5249
CAGAUGUCAGAAAAUCUA	chr5:29002343-29002589(+)$1	246	140	158	14.5249
UGGUGAAAUCAAACCCAG	chr5:53629435-53629692(+)$1	257	132	150	14.5138
AAACUAAGUGUUGGGUGG	chr18:75699529-75699811(-)$1	282	191	209	13.9767
AAUUCAAGAUCAAGAGUA	chr11:65267588-65267796(+)$1	208	175	193	14.5249
AAUUUGGUGAUGAAGGUA	chr11:65268069-65268272(+)$1	203	37	55	16.6869
AGUUUGAAUUGGGAAGCU	chr11:65269341-65269545(+)$1	204	169	187	13.5888
CCCAGCACAGAAACUGGG	chr16:20696128-20696405(+)$1	277	253	271	13.3471
AAUUCAAGAUCAAGAGUA	chr11:65267612-65267819(+)$1	207	151	169	14.5249
ggugcagauaaaagcacc	chr16:20687642-20687893(+)$1	251	53	71	14.0302
CAGCCAGCGCAGGGGCUU	chr11:65266526-65266731(+)$1	205	0	18	14.5249
AAUUUGGUGAUGAAGGUA	chr11:65268023-65268225(+)$1	202	83	101	16.6869
aauaaaaucacaauuauu	chr7:76221967-76222209(+)$1	242	8	26	13.3471
UGGAAAAGUAACAUUCCC	chr11:62284728-62285015(-)$1	287	85	103	15.2708
AAUUUGGUGAUGAAGGUA	chr11:65267953-65268160(+)$1	207	153	171	16.6869
cuagaauaggauaucugg	chr7:119433994-119434271(-)$1	277	9	27	14.0302
aaaacaauuagggguuga	chr8:91265500-91265804(+)$1	304	210	228	14.0617
guaguucaguuguacugc	chr7:119546639-119546898(-)$1	259	152	170	14.0302
CACUGAAUAACUACAGCU	chr5:126237475-126237764(-)$1	289	196	214	13.7581
AAAGUGCAGGCAAACUUG	chr11:62286369-62286605(-)$1	236	203	221	12.4263
UUUUGUCAAUUGCCAAAU	chr18:9256905-9257166(+)$1	261	105	123	15.7538
AAUUUGGUGAUGAAGGUA	chr11:65267976-65268183(+)$1	207	130	148	16.6869
AAUUUGGUGAUGAAGGUA	chr11:65267928-65268136(+)$1	208	178	196	16.6869
gagacuacaucaugucuc	chr6:147617271-147617572(+)$1	301	269	287	13.3471
gggcugagauucaaguac	chr11:2677206-2677508(-)$1	302	2	20	13.5660
AAAGAUAUUUUUUUUUUA	chr7:120897349-120897597(+)$1	248	209	227	16.6869
AAUUUGGUGAUGAAGGUA	chr11:65267991-65268195(+)$1	204	115	133	16.6869
aaccaaaacagcauggua	chr19:21630265-21630583(-)$1	318	117	135	14.9876
ucaauggugaaagauuga	chr8:91269569-91269829(+)$1	260	51	69	14.0302
ACUUGAAGAGCCCCAAGG	chr11:62294486-62294761(-)$1	275	53	71	15.5941
AAUUUGGUGAUGAAGGUA	chr11:65267983-65268191(+)$1	208	123	141	16.6869
GGUGAGGAGGGAAUCAGA	chr17:80420519-80420745(+)$1	226	114	132	13.9767
CAUGCUGAUUUUUGUAUU	chr5:53635617-53635872(+)$1	255	88	106	14.5249
AGUUUGAAUUGGGAAGCU	chr11:65269426-65269632(+)$1	206	84	102	13.5888
caaguaaaccaacauuug	chr7:120887413-120887668(+)$1	255	91	109	14.0302
AAUUUGGUGAUGAAGGUA	chr11:65268050-65268254(+)$1	204	56	74	16.6869
agagguuauaccuccucu	chr1:41634973-41635254(-)$1	281	136	154	13.3471
AAUUUGGUGAUGAAGGUA	chr11:65268057-65268265(+)$1	208	49	67	16.6869
AGGUAAUGAAAAAUACCU	chr9:100700249-100700509(-)$1	260	168	186	14.0302
AAUUUGGUGAUGAAGGUA	chr11:65268026-65268229(+)$1	203	80	98	16.6869
AUUCAACUUCUUGUGAAU	chr17:68026648-68026933(-)$1	285	189	207	14.0302
AAUUUGGUGAUGAAGGUA	chr11:65267995-65268201(+)$1	206	111	129	16.6869
ucaguuagauucugcuga	chr4:32011664-32011931(+)$1	267	102	120	16.2786
UGUUAGCUUCCAAUGACC	chr1:203766812-203767065(+)$1	253	139	157	16.5135
GAGGCGGGGGGGAGUUUU	chr11:65268599-65268824(+)$1	225	73	91	13.2953
uuuggggguggagccauu	chr4:770468-770771(-)$1	303	135	153	13.8795
gauaggaagagauuuguu	chr5:145868574-145868867(+)$1	293	54	72	14.0302
UUGAGAAACUGCCCGAAA	chr7:119425932-119426183(-)$1	251	146	164	12.6686
GAGGCGGGGGGGAGUUUU	chr11:65268624-65268837(+)$1	213	48	66	13.2953

#DB
(((((........)))))	chr3:160134046-160134300(+)$1	1	174	192	14.0302
(((((........)))).	chr8:59542509-59542786(-)$1	1	255	273	16.1526
(((((........)))).	chr2:55253888-55254152(-)$1	1	160	178	15.5054
.((((........)))).	chr11:65267972-65268176(+)$1	1	134	152	16.6869
.((((........)))).	chr7:119435329-119435568(-)$1	1	207	225	14.5249
.((((........)))).	chrX:152956449-152956715(+)$1	1	92	110	16.6869
.((((........)))).	chr11:65268029-65268233(+)$1	1	77	95	16.6869
.((((........)))).	chr11:65267960-65268172(+)$1	1	146	164	16.6869
.((((........)))).	chr11:65267922-65268128(+)$1	1	184	202	16.6869
(((((........)))..	chr3:6629418-6629689(+)$1	1	195	213	13.4155
(((((........)))).	chr14:102267445-102267759(+)$1	1	7	25	16.0709
.((((........)))).	chr7:120884436-120884699(+)$1	1	3	21	14.5249
.((((........)))).	chr5:29002343-29002589(+)$1	1	140	158	14.5249
(((.(........)))))	chr5:53629435-53629692(+)$1	1	132	150	14.5138
..(((........)))..	chr18:75699529-75699811(-)$1	1	191	209	13.9767
.((((........)))).	chr11:65267588-65267796(+)$1	1	175	193	14.5249
.((((........)))).	chr11:65268069-65268272(+)$1	1	37	55	16.6869
(((((........)))))	chr11:65269341-65269545(+)$1	1	169	187	13.5888
(((((........)))))	chr16:20696128-20696405(+)$1	1	253	271	13.3471
.((((........)))).	chr11:65267612-65267819(+)$1	1	151	169	14.5249
(((((........)))))	chr16:20687642-20687893(+)$1	1	53	71	14.0302
.((((........)))).	chr11:65266526-65266731(+)$1	1	0	18	14.5249
.((((........)))).	chr11:65268023-65268225(+)$1	1	83	101	16.6869
(((((........)))))	chr7:76221967-76222209(+)$1	1	8	26	13.3471
)((((........)))).	chr11:62284728-62285015(-)$1	1	85	103	15.2708
.((((........)))).	chr11:65267953-65268160(+)$1	1	153	171	16.6869
(((((........)))))	chr7:119433994-119434271(-)$1	1	9	27	14.0302
..(((........)))..	chr8:91265500-91265804(+)$1	1	210	228	14.0617
(((((........)))))	chr7:119546639-119546898(-)$1	1	152	170	14.0302
(((((........))).)	chr5:126237475-126237764(-)$1	1	196	214	13.7581
((.((........)))))	chr11:62286369-62286605(-)$1	1	203	221	12.4263
.((((........)))).	chr18:9256905-9257166(+)$1	1	105	123	15.7538
.((((........)))).	chr11:65267976-65268183(+)$1	1	130	148	16.6869
.((((........)))).	chr11:65267928-65268136(+)$1	1	178	196	16.6869
(((((........)))))	chr6:147617271-147617572(+)$1	1	269	287	13.3471
(((((........))).)	chr11:2677206-2677508(-)$1	1	2	20	13.5660
.((((........)))).	chr7:120897349-120897597(+)$1	1	209	227	16.6869
.((((........)))).	chr11:65267991-65268195(+)$1	1	115	133	16.6869
.((((........))))(	chr19:21630265-21630583(-)$1	1	117	135	14.9876
(((((........)))))	chr8:91269569-91269829(+)$1	1	51	69	14.0302
.((((........)))).	chr11:62294486-62294761(-)$1	1	53	71	15.5941
.((((........)))).	chr11:65267983-65268191(+)$1	1	123	141	16.6869
..(((........)))..	chr17:80420519-80420745(+)$1	1	114	132	13.9767
.((((........)))).	chr5:53635617-53635872(+)$1	1	88	106	14.5249
(((((........)))))	chr11:65269426-65269632(+)$1	1	84	102	13.5888
(((((........)))))	chr7:120887413-120887668(+)$1	1	91	109	14.0302
.((((........)))).	chr11:65268050-65268254(+)$1	1	56	74	16.6869
(((((........)))))	chr1:41634973-41635254(-)$1	1	136	154	13.3471
.((((........)))).	chr11:65268057-65268265(+)$1	1	49	67	16.6869
(((((........)))))	chr9:100700249-100700509(-)$1	1	168	186	14.0302
.((((........)))).	chr11:65268026-65268229(+)$1	1	80	98	16.6869
(((((........)))))	chr17:68026648-68026933(-)$1	1	189	207	14.0302
.((((........)))).	chr11:65267995-65268201(+)$1	1	111	129	16.6869
(((((........)))).	chr4:32011664-32011931(+)$1	1	102	120	16.2786
.((((........)))).	chr1:203766812-203767065(+)$1	1	139	157	16.5135
(((((........).)))	chr11:65268599-65268824(+)$1	1	73	91	13.2953
..(((........)))))	chr4:770468-770771(-)$1	1	135	153	13.8795
(((((........)))))	chr5:145868574-145868867(+)$1	1	54	72	14.0302
((..(........)...)	chr7:119425932-119426183(-)$1	1	146	164	12.6686
(((((........).)))	chr11:65268624-65268837(+)$1	1	48	66	13.2953

#PSSM
[ : 0.30	e : 0.19	: : 0.13	g : 0.09	f : 0.05	d : 0.03	! : 0.03	= : 0.03	" : 0.03	c : 0.03	b : 0.01	$ : 0.01	# : 0.01	
d : 0.56	e : 0.18	g : 0.09	f : 0.03	! : 0.03	= : 0.03	" : 0.01	c : 0.01	# : 0.01	
d : 0.56	e : 0.15	c : 0.11	g : 0.09	= : 0.03	[ : 0.01	! : 0.01	
d : 0.55	e : 0.15	c : 0.11	g : 0.09	= : 0.03	[ : 0.01	b : 0.01	! : 0.01	
d : 0.55	e : 0.15	c : 0.11	a : 0.06	g : 0.06	= : 0.03	b : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.55	e : 0.15	c : 0.11	a : 0.06	g : 0.06	= : 0.03	b : 0.01	
d : 0.56	e : 0.15	c : 0.11	g : 0.06	= : 0.03	] : 0.03	b : 0.01	3 : 0.01	
d : 0.56	e : 0.16	c : 0.11	g : 0.09	= : 0.03	3 : 0.01	
d : 0.58	e : 0.16	g : 0.09	2 : 0.05	= : 0.03	3 : 0.03	] : 0.03	
] : 0.33	e : 0.18	: : 0.13	g : 0.09	2 : 0.05	d : 0.03	= : 0.03	3 : 0.03	f : 0.03	0 : 0.01	> : 0.01	c : 0.01	5 : 0.01	

#score	897.1532105820663
#seq	60
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_transcript_m1_run2.txt

#BEAR
"""ffffffvvvvvvvvvvvvvffffff444	chr2:216231238-216231459(-)$1	221	156	187	24.0605
==========ttttttttttt==========	chr3:37402707-37403073(+)$1	366	311	342	25.3509
iiiii!!ccctttttttttttccciiiiiii	chr1:167998368-167998651(+)$1	283	72	103	25.2653
$$$$fffffftttttttttttffffff]iii	chr7:7274384-7274642(+)$1	258	26	57	23.1363
ggggg:dddduuuuuuuuuuuudddd::eee	chr5:139866938-139867199(+)$1	261	103	134	20.3805
=========vvvvvvvvvvvvv=========	chr10:93579378-93579637(+)$1	259	30	61	25.4693
ggggggg!!avvvvvvvvvvvvva22ggggg	chr3:142759610-142759967(+)$1	357	36	67	23.9882
[iiiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr9:2828487-2828748(-)$1	261	81	112	25.3718
eeee[bbvvvvvvvvvvvvvbb]eeeee333	chr17:2586107-2586381(+)$1	274	165	196	20.8351
"""eeeeexxxxxxxxxxxxxxxeeeee22c	chr16:75049078-75049309(+)$1	231	53	84	19.0674
ee[gggggggtttttttttttggggggg]ee	chr17:25634665-25634888(+)$1	223	6	37	24.3060
gg!!eeeeexxxxxxxxxxxxxxxeeeeegg	chr2:65469484-65469774(+)$1	290	249	280	18.9566
Fdddd!!ccctttttttttttccc22dddd:	chr1:94922574-94922892(+)$1	318	96	127	21.6772
ee[gggggggtttttttttttggggggg]ee	chr17:65871205-65871508(+)$1	303	94	125	24.3060
[ddddcccvvvvvvvvvvvvvccc]dddd]b	chr11:65202454-65202702(+)$1	248	10	41	23.0857
gggggggyyyyyyyyyyyyyyyyggggggg:	chr3:113461294-113461559(-)$1	265	8	39	23.1086
GGGgggggggtttttttttttgggggggccc	chr6:88227987-88228277(-)$1	290	32	63	22.5549
ggggggddddwwwwwwwwwwwwwwdddd]gg	chr6:8079833-8080116(-)$1	283	202	233	22.4133
bbeeeee[bbtttttttttttbb]eeeee::	chr17:7016435-7016724(-)$1	289	213	244	20.7927
ddd:eeeeevvvvvvvvvvvvveeeeeFFFF	chr11:65202381-65202602(+)$1	221	82	113	20.3904
iii[cccyyyyyyyyyyyyyyyyccc]iiii	chr8:82591171-82591431(-)$1	260	171	202	24.0892
$$$$fffffftttttttttttffffffdddd	chr6:127633735-127634047(-)$1	312	227	258	22.5143
eee[eeeeeuuuuuuuuuuuueeeeeeeeee	chr4:73979246-73979508(-)$1	262	182	213	23.8001
:::ffffffuuuuuuuuuuuuffffffffff	chr20:25398826-25399102(+)$1	276	193	224	20.4481
ffffffdddduuuuuuuuuuuudddd]ffff	chrX:73439767-73440074(-)$1	307	213	244	22.7540
[hhhhhhhhvvvvvvvvvvvvvhhhhhhhh]	chr10:76042237-76042512(+)$1	275	57	88	21.6349
fffff[cccyyyyyyyyyyyyyyyyccc22f	chr2:61579241-61579494(-)$1	253	139	170	22.2279
####ccc[aattttttttttta]a]ccc444	chr11:65195692-65195904(+)$1	212	169	200	25.3742
####cccwwwwwwwwwwwwwwccc333eeee	chr2:118860359-118860613(+)$1	254	46	77	23.1493
dddd[eeeeettttttttttteeeee]dddd	chr12:98929198-98929459(+)$1	261	136	167	22.6007
ddd[ddddvvvvvvvvvvvvvdddddddd]b	chr2:58453507-58453821(-)$1	314	203	234	22.1422
=======[cccssssssssssccc]======	chr20:34246544-34246802(-)$1	258	107	138	18.1612
=======[bbtttttttttttbb]=======	chr2:175986928-175987200(-)$1	272	212	243	24.7936
ee!!fffffftttttttttttffffff22ee	chr3:150285200-150285477(+)$1	277	3	34	23.0858
iiiiiiiiwwwwwwwwwwwwwwiiiiiiiii	chr2:54186849-54187153(-)$1	304	238	269	24.6199
ccc[ddddyyyyyyyyyyyyyyyydddd]cc	chr10:5016732-5016992(+)$1	260	158	189	22.9807
e"""eeeeeuuuuuuuuuuuueeeee]eeee	chr2:160190179-160190432(-)$1	253	104	135	24.3138
hhh[ddddyyyyyyyyyyyyyyyydddd]hh	chr3:140682097-140682348(+)$1	251	95	126	22.1773
ggffffffwwwwwwwwwwwwwwffffff22g	chr10:52631706-52631966(-)$1	260	5	36	22.9997
==========ttttttttttt==========	chr10:120810498-120810749(-)$1	251	149	180	25.3509
[bb[ddddvvvvvvvvvvvvvdddd]bb]dd	chr2:61594555-61594822(-)$1	267	184	215	22.2556
[hhhhhhhhuuuuuuuuuuuuhhhhhhhh]d	chr14:39556459-39556733(-)$1	274	240	271	21.7728
'''ccc[cccuuuuuuuuuuuucccccc888	chr6:145103381-145103666(+)$1	285	160	191	21.6275
hhh!!cccvvvvvvvvvvvvvccchhhhhhh	chr6:157300036-157300337(+)$1	301	233	264	22.5325
:ccc"""ccctttttttttttccc22ccc::	chr12:107364958-107365210(+)$1	252	181	212	20.7994
d####ccctttttttttttccc4444dddd2	chr7:11124642-11124925(+)$1	283	172	203	20.3367
!!ccc[cccvvvvvvvvvvvvvcccccc]cc	chr15:25207505-25207765(+)$1	260	183	214	24.8628
="""eeeeewwwwwwwwwwwwwweeeee333	chr13:98930432-98930702(+)$1	270	52	83	24.1701
!!ccc[ddddtttttttttttdddd333ccc	chr6:4060891-4061171(+)$1	280	201	232	23.4830
dddgggggggtttttttttttggggggg]dd	chr2:36785868-36786110(-)$1	242	88	119	23.7505
dffffff[bbuuuuuuuuuuuubb]ffffff	chr10:111895032-111895369(+)$1	337	140	171	22.9291
[ffffff[bbuuuuuuuuuuuubbffffff]	chr2:230782625-230782949(-)$1	324	38	69	23.3177
========yyyyyyyyyyyyyyyy=======	chr14:31380755-31381019(-)$1	264	56	87	24.7215
!!ffffffwwwwwwwwwwwwwwffffff]cc	chr2:160620864-160621142(+)$1	278	8	39	23.5738
cc[eeeeexxxxxxxxxxxxxxxeeeee333	chr2:86351790-86352028(+)$1	238	192	223	19.2111

#otherMatches

#Seq PSSM
CCCUUAUGUAUAGUAGUUAAAGGCAUAAAAC	chr2:216231238-216231459(-)$1	221	156	187	24.0605
AAGAGUAAUUGAAAGUUUGAAAAUUGCUCUU	chr3:37402707-37403073(+)$1	366	311	342	25.3509
aaaaauaacugacauuuauugaguuuuuugu	chr1:167998368-167998651(+)$1	283	72	103	25.2653
ACUAUUCAGAUUUGAUUUGUUUCUGAAAAUG	chr7:7274384-7274642(+)$1	258	26	57	23.1363
UAAUGAGUGAGAAGUUUAAGAAUUACAUUCA	chr5:139866938-139867199(+)$1	261	103	134	20.3805
GAGUGCUGAUGUUUUAAGUGUUUCAGUAUUU	chr10:93579378-93579637(+)$1	259	30	61	25.4693
CAUUUAAAAAGUCUUAAGUAAUAUGGUUAAA	chr3:142759610-142759967(+)$1	357	36	67	23.9882
AGUUGUUUUUGUUUUGUUCUUAAGAAAUGAC	chr9:2828487-2828748(-)$1	261	81	112	25.3718
UAGUCCUGGGUUUUUGAAAAAGUGCUAAAAC	chr17:2586107-2586381(+)$1	274	165	196	20.8351
uauguuuucuucuaaaaguuuuaaaaauuug	chr16:75049078-75049309(+)$1	231	53	84	19.0674
UUAGUUCUUUACAAAUCAUAAGAAGAACAAA	chr17:25634665-25634888(+)$1	223	6	37	24.3060
UACUGAUGAGCAGAUUUCACAACGUUAUCUG	chr2:65469484-65469774(+)$1	290	249	280	18.9566
uuugaguuccuuauauauuuuggauauuaac	chr1:94922574-94922892(+)$1	318	96	127	21.6772
UAAUGAGUUUUAUGUAUUAGUGAAUUUGCUA	chr17:65871205-65871508(+)$1	303	94	125	24.3060
ucaagguauaauuuuuuaaauugcUUUUGUC	chr11:65202454-65202702(+)$1	248	10	41	23.0857
AUUUUACCAAAUAAAAUUAAAAUGUAAGAUU	chr3:113461294-113461559(-)$1	265	8	39	23.1086
UCUUCUAUUCACAUCUGACUAGAGUAGACCU	chr6:88227987-88228277(-)$1	290	32	63	22.5549
AACAAGUUGAGAUCCAGUUAUAAAUUAACCU	chr6:8079833-8080116(-)$1	283	202	233	22.4133
AUCCUUCUGUAAUAAAUCUUGACUGAAGGAC	chr17:7016435-7016724(-)$1	289	213	244	20.7927
gucaagguauaauuuuuuaaauugcUUUUGU	chr11:65202381-65202602(+)$1	221	82	113	20.3904
CUUCGUUUAUGCUUCUUUAUUCUAAUAAAGU	chr8:82591171-82591431(-)$1	260	171	202	24.0892
uuucuuguuuuggccuauuauaaauaaagcu	chr6:127633735-127634047(-)$1	312	227	258	22.5143
CUUUGUAACUAACAAAAUUUUGUUAUAGGAA	chr4:73979246-73979508(-)$1	262	182	213	23.8001
AAUUCUAUUAUUACUUAACAAAAUAGAGUCC	chr20:25398826-25399102(+)$1	276	193	224	20.4481
UGGGAACAGCUGUAUAUGAAAUGUUGAUUCU	chrX:73439767-73440074(-)$1	307	213	244	22.7540
AAGAUUUAGUUUUAUUUCUUUGUUGGAUUUA	chr10:76042237-76042512(+)$1	275	57	88	21.6349
aaauugagaauuccuaauccaaaacucuaaa	chr2:61579241-61579494(-)$1	253	139	170	22.2279
UGCAUCUGACUGACUAUGACUGCUGAGAGAU	chr11:65195692-65195904(+)$1	212	169	200	25.3742
UUGAUACUUUUUUCAGGUCUCGUAGGUAUCA	chr2:118860359-118860613(+)$1	254	46	77	23.1493
AGUGCUAUGUGAUUUUUAAAAAUGUAUUACU	chr12:98929198-98929459(+)$1	261	136	167	22.6007
AGGUGGUGAAGAAAUAAAAUGUACUCCUGGC	chr2:58453507-58453821(-)$1	314	203	234	22.1422
ggagucuugcucaguugcccaggcuagacuc	chr20:34246544-34246802(-)$1	258	107	138	18.1612
CUUUGGCAUGCAAAACUUAUCCAAGUUAGAG	chr2:175986928-175987200(-)$1	272	212	243	24.7936
ucuucuCUUAAAACCAAUUACUGAGAGUUGG	chr3:150285200-150285477(+)$1	277	3	34	23.0858
GGGGAGGUGAGUUUAUGAAAAAACCUUUCCU	chr2:54186849-54187153(-)$1	304	238	269	24.6199
gauuuuuuuaccuguaacauauaugaaaugu	chr10:5016732-5016992(+)$1	260	158	189	22.9807
GUUUUGAUAAGAUUCUACAACUGUCAUUGGU	chr2:160190179-160190432(-)$1	253	104	135	24.3138
CGUUUAUCGAUAUAAACCAAAUUAGGUAUAU	chr3:140682097-140682348(+)$1	251	95	126	22.1773
aaaaaauguuaucuugguuuuuuguuuuaau	chr10:52631706-52631966(-)$1	260	5	36	22.9997
GUCAUUCAAAUAAUAGAAAUUUUUGGAUGAU	chr10:120810498-120810749(-)$1	251	149	180	25.3509
GUCUAACAUUGUGUGCUUGuuuguuugagau	chr2:61594555-61594822(-)$1	267	184	215	22.2556
AUUUAUUUUGACUGUUAAUUAGAAAUAAAGU	chr14:39556459-39556733(-)$1	274	240	271	21.7728
UAUAGCUAAGUCCUACUUUCUUCUUGUUUCA	chr6:145103381-145103666(+)$1	285	160	191	21.6275
UAUUACUGUUUCUAUACUUACCAGGUGACAG	chr6:157300036-157300337(+)$1	301	233	264	22.5325
ACAGGAAAGAAGAAAGACAAAUCUGACUGAA	chr12:107364958-107365210(+)$1	252	181	212	20.7994
UUUUGCUUGACAUGUUUUAAAGAUUUACUGA	chr7:11124642-11124925(+)$1	283	172	203	20.3367
CUGAAGUGAUUAAUUUACAUAUUCAUUCUUG	chr15:25207505-25207765(+)$1	260	183	214	24.8628
gagaacauguuguauguguguguugugugug	chr13:98930432-98930702(+)$1	270	52	83	24.1701
AAUGUAUAUGGUUGCAGUUCACAUAAAGACA	chr6:4060891-4061171(+)$1	280	201	232	23.4830
UGCUAUUUUUAAAAUGUGUUGAAAAAUAUGC	chr2:36785868-36786110(-)$1	242	88	119	23.7505
UUGCUAAUGCCUCUAUUUACUUGCUUUGGCA	chr10:111895032-111895369(+)$1	337	140	171	22.9291
GUGAAGAACAACUUACAACUCAUGUCUUCAG	chr2:230782625-230782949(-)$1	324	38	69	23.3177
UAUUUAAUUAACAUCAUCAUUAUUGUUAAAU	chr14:31380755-31381019(-)$1	264	56	87	24.7215
AGACAAUAUCAUUGGAUAAAAUUAUUGUAUC	chr2:160620864-160621142(+)$1	278	8	39	23.5738
acccuguaagaauugagauaauguauagaaa	chr2:86351790-86352028(+)$1	238	192	223	19.2111

#DB
...((((((.............))))))...	chr2:216231238-216231459(-)$1	1	156	187	24.0605
((((((((((...........))))))))))	chr3:37402707-37403073(+)$1	1	311	342	25.3509
(((((..(((...........))))))))))	chr1:167998368-167998651(+)$1	1	72	103	25.2653
....((((((...........)))))).)))	chr7:7274384-7274642(+)$1	1	26	57	23.1363
))))).((((............))))..(((	chr5:139866938-139867199(+)$1	1	103	134	20.3805
(((((((((.............)))))))))	chr10:93579378-93579637(+)$1	1	30	61	25.4693
(((((((..(.............)..)))))	chr3:142759610-142759967(+)$1	1	36	67	23.9882
.(((((((((............)))))))))	chr9:2828487-2828748(-)$1	1	81	112	25.3718
((((.((.............)).)))))...	chr17:2586107-2586381(+)$1	1	165	196	20.8351
...(((((...............)))))..)	chr16:75049078-75049309(+)$1	1	53	84	19.0674
((.(((((((...........))))))).))	chr17:25634665-25634888(+)$1	1	6	37	24.3060
((..(((((...............)))))))	chr2:65469484-65469774(+)$1	1	249	280	18.9566
(((((..(((...........)))..)))).	chr1:94922574-94922892(+)$1	1	96	127	21.6772
((.(((((((...........))))))).))	chr17:65871205-65871508(+)$1	1	94	125	24.3060
.(((((((.............))).)))).)	chr11:65202454-65202702(+)$1	1	10	41	23.0857
(((((((................))))))).	chr3:113461294-113461559(-)$1	1	8	39	23.1086
((((((((((...........)))))))(((	chr6:88227987-88228277(-)$1	1	32	63	22.5549
((((((((((..............)))).))	chr6:8079833-8080116(-)$1	1	202	233	22.4133
))(((((.((...........)).)))))..	chr17:7016435-7016724(-)$1	1	213	244	20.7927
))).(((((.............)))))))))	chr11:65202381-65202602(+)$1	1	82	113	20.3904
(((.(((................))).))))	chr8:82591171-82591431(-)$1	1	171	202	24.0892
....((((((...........))))))))))	chr6:127633735-127634047(-)$1	1	227	258	22.5143
(((.(((((............))))))))))	chr4:73979246-73979508(-)$1	1	182	213	23.8001
...((((((............))))))((((	chr20:25398826-25399102(+)$1	1	193	224	20.4481
((((((((((............)))).))))	chrX:73439767-73440074(-)$1	1	213	244	22.7540
.((((((((.............)))))))).	chr10:76042237-76042512(+)$1	1	57	88	21.6349
(((((.(((................)))..)	chr2:61579241-61579494(-)$1	1	139	170	22.2279
....(((.((...........).).)))...	chr11:65195692-65195904(+)$1	1	169	200	25.3742
....(((..............)))...))))	chr2:118860359-118860613(+)$1	1	46	77	23.1493
((((.(((((...........))))).))))	chr12:98929198-98929459(+)$1	1	136	167	22.6007
(((.((((.............)))))))).)	chr2:58453507-58453821(-)$1	1	203	234	22.1422
(((((((.(((..........))).))))))	chr20:34246544-34246802(-)$1	1	107	138	18.1612
(((((((.((...........)).)))))))	chr2:175986928-175987200(-)$1	1	212	243	24.7936
((..((((((...........))))))..))	chr3:150285200-150285477(+)$1	1	3	34	23.0858
((((((((..............)))))))))	chr2:54186849-54187153(-)$1	1	238	269	24.6199
(((.((((................)))).))	chr10:5016732-5016992(+)$1	1	158	189	22.9807
(...(((((............))))).))))	chr2:160190179-160190432(-)$1	1	104	135	24.3138
(((.((((................)))).))	chr3:140682097-140682348(+)$1	1	95	126	22.1773
((((((((..............))))))..)	chr10:52631706-52631966(-)$1	1	5	36	22.9997
((((((((((...........))))))))))	chr10:120810498-120810749(-)$1	1	149	180	25.3509
.((.((((.............)))).)).))	chr2:61594555-61594822(-)$1	1	184	215	22.2556
.((((((((............)))))))).)	chr14:39556459-39556733(-)$1	1	240	271	21.7728
...(((.(((............))))))...	chr6:145103381-145103666(+)$1	1	160	191	21.6275
(((..(((.............))))))))))	chr6:157300036-157300337(+)$1	1	233	264	22.5325
.(((...(((...........)))..)))..	chr12:107364958-107365210(+)$1	1	181	212	20.7994
(....(((...........)))....)))).	chr7:11124642-11124925(+)$1	1	172	203	20.3367
..(((.(((.............)))))).))	chr15:25207505-25207765(+)$1	1	183	214	24.8628
(...(((((..............)))))...	chr13:98930432-98930702(+)$1	1	52	83	24.1701
..(((.((((...........))))...)))	chr6:4060891-4061171(+)$1	1	201	232	23.4830
((((((((((...........))))))).))	chr2:36785868-36786110(-)$1	1	88	119	23.7505
(((((((.((............)).))))))	chr10:111895032-111895369(+)$1	1	140	171	22.9291
.((((((.((............)))))))).	chr2:230782625-230782949(-)$1	1	38	69	23.3177
((((((((................)))))))	chr14:31380755-31381019(-)$1	1	56	87	24.7215
..((((((..............)))))).))	chr2:160620864-160621142(+)$1	1	8	39	23.5738
((.(((((...............)))))...	chr2:86351790-86352028(+)$1	1	192	223	19.2111

#PSSM
= : 0.12	g : 0.10	[ : 0.10	e : 0.10	d : 0.10	i : 0.05	! : 0.05	" : 0.03	$ : 0.03	: : 0.03	f : 0.03	# : 0.03	c : 0.03	h : 0.03	F : 0.01	G : 0.01	b : 0.01	' : 0.01	
= : 0.10	g : 0.10	d : 0.10	e : 0.09	" : 0.07	i : 0.07	f : 0.07	h : 0.07	# : 0.05	c : 0.05	! : 0.05	$ : 0.03	b : 0.03	G : 0.01	: : 0.01	' : 0.01	
= : 0.10	d : 0.10	f : 0.10	" : 0.07	i : 0.07	g : 0.07	h : 0.07	c : 0.07	e : 0.05	[ : 0.05	# : 0.05	$ : 0.03	! : 0.03	G : 0.01	: : 0.01	b : 0.01	' : 0.01	
f : 0.14	g : 0.14	= : 0.10	[ : 0.10	e : 0.07	c : 0.07	i : 0.05	! : 0.05	d : 0.05	# : 0.05	$ : 0.03	h : 0.03	" : 0.03	: : 0.01	
f : 0.20	g : 0.14	e : 0.14	= : 0.10	d : 0.10	c : 0.10	i : 0.05	[ : 0.03	h : 0.03	! : 0.01	" : 0.01	# : 0.01	
f : 0.18	e : 0.16	g : 0.12	c : 0.12	= : 0.10	d : 0.07	[ : 0.05	! : 0.03	i : 0.03	h : 0.03	: : 0.01	b : 0.01	" : 0.01	
f : 0.16	e : 0.16	d : 0.14	c : 0.14	= : 0.10	g : 0.10	! : 0.03	i : 0.03	h : 0.03	b : 0.01	[ : 0.01	" : 0.01	
c : 0.16	d : 0.14	e : 0.14	f : 0.12	[ : 0.10	= : 0.07	g : 0.07	i : 0.03	y : 0.03	h : 0.03	! : 0.01	v : 0.01	w : 0.01	
c : 0.12	e : 0.10	f : 0.09	v : 0.09	y : 0.09	d : 0.07	g : 0.07	b : 0.07	w : 0.07	= : 0.05	x : 0.03	h : 0.03	! : 0.01	i : 0.01	a : 0.01	t : 0.01	
v : 0.18	y : 0.10	c : 0.09	w : 0.09	d : 0.07	g : 0.07	b : 0.07	u : 0.07	f : 0.05	x : 0.05	= : 0.03	a : 0.03	i : 0.01	e : 0.01	t : 0.01	
t : 0.32	v : 0.20	u : 0.18	y : 0.10	w : 0.10	x : 0.05	c : 0.01	
t : 0.32	v : 0.20	u : 0.18	y : 0.10	w : 0.10	x : 0.05	s : 0.01	
t : 0.32	v : 0.20	u : 0.18	y : 0.10	w : 0.10	x : 0.05	s : 0.01	
t : 0.32	v : 0.20	u : 0.18	y : 0.10	w : 0.10	x : 0.05	s : 0.01	
t : 0.32	v : 0.20	u : 0.18	y : 0.10	w : 0.10	x : 0.05	s : 0.01	
t : 0.32	v : 0.20	u : 0.18	y : 0.10	w : 0.10	x : 0.05	s : 0.01	
t : 0.32	v : 0.20	u : 0.18	y : 0.10	w : 0.10	x : 0.05	s : 0.01	
t : 0.32	v : 0.20	u : 0.18	y : 0.10	w : 0.10	x : 0.05	s : 0.01	
t : 0.32	v : 0.20	u : 0.18	y : 0.10	w : 0.10	x : 0.05	s : 0.01	
t : 0.30	v : 0.20	u : 0.18	y : 0.10	w : 0.10	x : 0.05	s : 0.01	c : 0.01	
t : 0.30	v : 0.18	u : 0.18	y : 0.10	w : 0.10	x : 0.05	b : 0.01	s : 0.01	c : 0.01	
c : 0.14	v : 0.10	u : 0.10	y : 0.10	w : 0.09	f : 0.07	g : 0.07	b : 0.05	x : 0.05	e : 0.05	d : 0.05	= : 0.03	a : 0.01	h : 0.01	
c : 0.16	f : 0.12	y : 0.10	d : 0.09	g : 0.07	b : 0.07	e : 0.07	= : 0.05	x : 0.05	i : 0.03	] : 0.03	w : 0.03	h : 0.03	v : 0.01	4 : 0.01	
c : 0.18	e : 0.14	f : 0.12	d : 0.09	g : 0.09	y : 0.07	= : 0.05	a : 0.03	i : 0.03	] : 0.03	h : 0.03	b : 0.03	x : 0.01	w : 0.01	4 : 0.01	
e : 0.18	f : 0.14	d : 0.14	= : 0.09	g : 0.09	] : 0.07	i : 0.05	2 : 0.05	c : 0.05	h : 0.05	y : 0.01	3 : 0.01	4 : 0.01	
e : 0.18	f : 0.16	d : 0.12	= : 0.10	g : 0.09	c : 0.09	i : 0.05	2 : 0.05	h : 0.05	3 : 0.03	] : 0.01	4 : 0.01	
f : 0.16	e : 0.14	d : 0.12	= : 0.10	g : 0.10	c : 0.09	] : 0.07	i : 0.05	h : 0.05	3 : 0.03	: : 0.01	b : 0.01	
e : 0.16	d : 0.16	f : 0.12	= : 0.10	g : 0.10	c : 0.09	i : 0.07	h : 0.05	] : 0.01	: : 0.01	F : 0.01	2 : 0.01	b : 0.01	3 : 0.01	
] : 0.16	= : 0.10	e : 0.10	d : 0.10	i : 0.09	2 : 0.07	f : 0.07	3 : 0.05	c : 0.05	h : 0.05	4 : 0.03	g : 0.03	F : 0.01	8 : 0.01	
e : 0.12	= : 0.10	d : 0.10	i : 0.09	c : 0.09	g : 0.07	f : 0.07	3 : 0.05	2 : 0.05	] : 0.05	h : 0.05	4 : 0.03	: : 0.03	F : 0.01	8 : 0.01	
e : 0.12	= : 0.10	c : 0.10	i : 0.09	d : 0.09	g : 0.07	: : 0.07	f : 0.07	3 : 0.05	4 : 0.03	b : 0.03	] : 0.03	h : 0.03	F : 0.01	8 : 0.01	2 : 0.01	

#score	1253.0811161810893
#seq	55
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_UTR_m3_run1.txt

#BEAR
fff[cccqqqqqqqqcccffff	chr3:141712236-141712536(-)$1	300	45	67	15.0473
gggggggqqqqqqqqggggggg	chr2:209118467-209118807(-)$1	340	2	24	16.0853
gggggggrrrrrrrrrgggggg	chr17:31065268-31065547(-)$1	279	194	216	9.9294
gggggggqqqqqqqqggggggg	chr7:140051096-140051397(-)$1	301	264	286	16.0853
eeeecccqqqqqqqqccc]eee	chr6:91260111-91260385(-)$1	274	150	172	14.8613
hhhhhhhqqqqqqqqhhhhhhh	chr17:37590458-37590706(-)$1	248	221	243	13.5123
!ffffffqqqqqqqqffffff6	chr2:38804471-38804722(-)$1	251	63	85	14.0160
c!!bb[aqqqqqqqqabb22cc	chr18:13057609-13057862(+)$1	253	169	191	14.1954
iiiiiiiqqqqqqqqiiiiiii	chr1:211447431-211447703(+)$1	272	115	137	15.6757
[ccc[bbqqqqqqqqbb]ccc]	chr1:32403281-32403532(-)$1	251	140	162	14.7322
gggggggrrrrrrrrrgggggg	chr17:19861756-19862028(-)$1	272	126	148	9.9294
iiiiibbqqqqqqqqbb22iii	chr12:46760775-46761080(-)$1	305	5	27	14.9979
ddd!!bbqqqqqqqqbb]dddd	chr3:50099262-50099539(+)$1	277	161	183	13.8823
:ffffffqqqqqqqqffffffb	chr12:57905785-57906091(+)$1	306	232	254	13.0440
eeee[bbqqqqqqqqbbeeeee	chr2:48025632-48025884(+)$1	252	186	208	14.1355
c!!ddddqqqqqqqqdddd22c	chr6:43594517-43594826(-)$1	309	152	174	13.5894
a"""cccqqqqqqqqccc333a	chr1:52212267-52212569(+)$1	302	56	78	15.5546
ggeeeeeqqqqqqqqeeeeeee	chr2:70516320-70516639(-)$1	319	234	256	14.1235
ccc[cccqqqqqqqqccc22cc	chr7:107531622-107531875(+)$1	253	215	237	15.2883
a"""cccqqqqqqqqccc333a	chr6:43594027-43594270(-)$1	243	10	32	15.5546
gggggggqqqqqqqqggggggg	chr17:62499847-62500121(-)$1	274	238	260	16.0853
eeeee[aqqqqqqqqa]eeeee	chr3:183860462-183860780(+)$1	318	294	316	14.2975
ee[ddddqqqqqqqqdddd]ee	chr2:234754257-234754577(-)$1	320	174	196	13.5456
gggggggqqqqqqqqggggggg	chr2:70143098-70143393(+)$1	295	160	182	16.0853
d####bbqqqqqqqqbb333dd	chr9:138773525-138773793(-)$1	268	119	141	14.4821
[ccc!!aqqqqqqqqa22ccc]	chr12:56680125-56680396(-)$1	271	235	257	14.5834
d"""cccqqqqqqqqcccdddd	chr2:70451615-70451915(-)$1	300	160	182	14.5955
dd!!a[aqqqqqqqqa]a22dd	chr18:33720983-33721226(+)$1	243	218	240	14.5969
gggggggqqqqqqqqggggggg	chr5:10255943-10256196(+)$1	253	8	30	16.0853
ffff[bbqqqqqqqqbb]ffff	chr8:124796572-124796848(+)$1	276	72	94	14.3738
iiiiiiiqqqqqqqqiiiiiii	chr7:30639550-30639797(+)$1	247	223	245	15.6757
ggg[cccqqqqqqqqccc]ggg	chr6:136600886-136601137(-)$1	251	69	91	16.1210
$$$$cccqqqqqqqqccc4444	chr15:58925419-58925687(-)$1	268	179	201	14.0757
gggggggqqqqqqqqggggggg	chr5:175782605-175782861(-)$1	256	138	160	16.0853
gggggggqqqqqqqqggggggg	chr14:73577420-73577739(+)$1	319	37	59	16.0853
gg[ddddqqqqqqqqdddd]gg	chr21:45212463-45212756(+)$1	293	125	147	14.2508
#ffffffqqqqqqqqffffffh	chr2:182763491-182763746(+)$1	255	58	80	14.2279
dd!!cccqqqqqqqqccc22dd	chr5:137904481-137904720(-)$1	239	132	154	14.9674
gggggggqqqqqqqqggggggg	chr3:167437922-167438187(-)$1	265	149	171	16.0853
ggggg[aqqqqqqqqagggggg	chr15:79170494-79170755(+)$1	261	100	122	16.1257
gggggggqqqqqqqqggggggg	chr7:151900024-151900266(-)$1	242	84	106	16.0853
fffffffqqqqqqqqffffff]	chr5:10254108-10254415(+)$1	307	140	162	14.3008
!ffffffqqqqqqqqffffff6	chr2:38804550-38804807(-)$1	257	148	170	14.0160
a[eeeeeqqqqqqqqeeeeeaa	chr17:73142616-73142893(-)$1	277	222	244	13.9587
ddddcccqqqqqqqqccc]ddd	chr3:195780303-195780546(-)$1	243	55	77	14.2442
gggggggrrrrrrrrrgggggg	chr2:54112769-54113014(-)$1	245	18	40	9.9294
cceeeeeqqqqqqqqeeeee>>	chr3:197023927-197024226(-)$1	299	172	194	13.5037
ddeeeeeqqqqqqqqeeeee33	chr5:137909404-137909638(-)$1	234	197	219	13.7895
hhhhh[aqqqqqqqqahhhhhh	chr14:70235887-70236146(+)$1	259	25	47	13.9863
fff!!bbqqqqqqqqbb22fff	chr2:70456073-70456344(-)$1	271	214	236	14.4482
[bb!!bbqqqqqqqqbb4444b	chr1:160969030-160969348(-)$1	318	260	282	13.8910
gggggggqqqqqqqqggggggg	chr7:150066642-150066894(+)$1	252	125	147	16.0853
[bb[cccqqqqqqqqcccbb]d	chr18:33749904-33750169(+)$1	265	180	202	14.1426
gggg[bbqqqqqqqqbb]gggg	chr17:43182840-43183113(+)$1	273	24	46	15.5795

#otherMatches

#Seq PSSM
UAUUAAUGAAAUUAAAUUGUAU	chr3:141712236-141712536(-)$1	300	45	67	15.0473
GAGUACACUCAGCACUGUACUU	chr2:209118467-209118807(-)$1	340	2	24	16.0853
CAGAGGUGACCAAGCGACCUCU	chr17:31065268-31065547(-)$1	279	194	216	9.9294
UGUUGCCCAAGUCAAGGCGAUA	chr7:140051096-140051397(-)$1	301	264	286	16.0853
CCUUGUCAGUAUUCAGAUGAAG	chr6:91260111-91260385(-)$1	274	150	172	14.8613
UUUUUGCUUUUGUUUGUAAAAA	chr17:37590458-37590706(-)$1	248	221	243	13.5123
GCCAGAGACAAGCCAUUUUGGG	chr2:38804471-38804722(-)$1	251	63	85	14.0160
UUAGGUGCUUGAUUUCCCCCAU	chr18:13057609-13057862(+)$1	253	169	191	14.1954
UGCAGUGGAUGAAUACAUUGCA	chr1:211447431-211447703(+)$1	272	115	137	15.6757
GAGCGUgggggagagugaguug	chr1:32403281-32403532(-)$1	251	140	162	14.7322
UUUGCUUCUAUCUUUUAGGCAG	chr17:19861756-19862028(-)$1	272	126	148	9.9294
CCUUUUGAAGACUGCCAAUGAA	chr12:46760775-46761080(-)$1	305	5	27	14.9979
AUUACCUGAGGAAGAAGAGAUC	chr3:50099262-50099539(+)$1	277	161	183	13.8823
GGUGGACCUGUAUCAGUUCAUG	chr12:57905785-57906091(+)$1	306	232	254	13.0440
CCUAAGACACAAGGAUCUAGGC	chr2:48025632-48025884(+)$1	252	186	208	14.1355
AAACAUUGAAUAUAAAGUGAGU	chr6:43594517-43594826(-)$1	309	152	174	13.5894
AAUGUACAUCGUAUAGUAAAGU	chr1:52212267-52212569(+)$1	302	56	78	15.5546
AACUUUAUAAAAAUUUAAAGCA	chr2:70516320-70516639(-)$1	319	234	256	14.1235
GCCUGGGCCGCACCACCCCUGG	chr7:107531622-107531875(+)$1	253	215	237	15.2883
UGAGUUUAAGUGGAAAGAGAAA	chr6:43594027-43594270(-)$1	243	10	32	15.5546
UGUGUAGAUUUUAGACUACAUA	chr17:62499847-62500121(-)$1	274	238	260	16.0853
GGUUUGGUAUCGAGUCAAGACU	chr3:183860462-183860780(+)$1	318	294	316	14.2975
AUACUGCUACAAGGUGCAGAGU	chr2:234754257-234754577(-)$1	320	174	196	13.5456
AACAUGGUUAUGCCUCCAUGUU	chr2:70143098-70143393(+)$1	295	160	182	16.0853
UUUGAGGGAUUAUAGCUGCUGC	chr9:138773525-138773793(-)$1	268	119	141	14.4821
CUAAUUCUUUUAAAUGuuuuaa	chr12:56680125-56680396(-)$1	271	235	257	14.5834
CCGAGUGGUAAAAGACAUGGCA	chr2:70451615-70451915(-)$1	300	160	182	14.5955
UGCUUAGUUAUAUCUCAAUACA	chr18:33720983-33721226(+)$1	243	218	240	14.5969
GCAGCUUAAUUCUAGAAGCUGC	chr5:10255943-10256196(+)$1	253	8	30	16.0853
UAAAUUAUACUUUCUUGUUUUA	chr8:124796572-124796848(+)$1	276	72	94	14.3738
AGCAGAGGAUGGAUGUUUUGCU	chr7:30639550-30639797(+)$1	247	223	245	15.6757
AUUUUAAAUAUCAUAUUGUAAU	chr6:136600886-136601137(-)$1	251	69	91	16.1210
AAGAAGUCCUUAAACACUGGAA	chr15:58925419-58925687(-)$1	268	179	201	14.0757
AUGUCCCUGCCCAUCGGGAUAU	chr5:175782605-175782861(-)$1	256	138	160	16.0853
UUUUACAAGAGGUAAUGUAAAA	chr14:73577420-73577739(+)$1	319	37	59	16.0853
GCUUUUCAGACCACGGAGGCGC	chr21:45212463-45212756(+)$1	293	125	147	14.2508
AUAGUAGUUAUAGUCCUACUAA	chr2:182763491-182763746(+)$1	255	58	80	14.2279
GAAAGUUCUAAGAACAAUGAUU	chr5:137904481-137904720(-)$1	239	132	154	14.9674
UUCUUUUAUCACCAAAAAAGAG	chr3:167437922-167438187(-)$1	265	149	171	16.0853
AGCAAAGGUAUGAAACUUGUUU	chr15:79170494-79170755(+)$1	261	100	122	16.1257
GUCACAUAUUUAUAAAUGUGAC	chr7:151900024-151900266(-)$1	242	84	106	16.0853
UUCAUUAGUCUCAUAUAAUGGC	chr5:10254108-10254415(+)$1	307	140	162	14.3008
GCCAGAGACAAGCCAUUUUGGG	chr2:38804550-38804807(-)$1	257	148	170	14.0160
GACUGGGGAGUGAAACCUGGCC	chr17:73142616-73142893(-)$1	277	222	244	13.9587
AAGGCAUACAAAAGAAUGUCCU	chr3:195780303-195780546(-)$1	243	55	77	14.2442
GACAAUAACAUUACAAUAUUGU	chr2:54112769-54113014(-)$1	245	18	40	9.9294
GAGAGUUUAUUCCGUAACUCUG	chr3:197023927-197024226(-)$1	299	172	194	13.5037
UUGAUAACUAGUACCUUAUCCA	chr5:137909404-137909638(-)$1	234	197	219	13.7895
UAAGAACAGAAAAUCGUCUUAU	chr14:70235887-70236146(+)$1	259	25	47	13.9863
GAAGUUUUUUUGUUUGAUAUUU	chr2:70456073-70456344(-)$1	271	214	236	14.4482
AGCAACCAGUUUGGAGGGAAGG	chr1:160969030-160969348(-)$1	318	260	282	13.8910
GGCCUCUCUGCAGUCAGAGGUC	chr7:150066642-150066894(+)$1	252	125	147	16.0853
CUGCUCCUCAGUCCUGGACGUG	chr18:33749904-33750169(+)$1	265	180	202	14.1426
UGCUCCCACAGCACAGGCGGUG	chr17:43182840-43183113(+)$1	273	24	46	15.5795

#DB
(((.(((........)))))))	chr3:141712236-141712536(-)$1	1	45	67	15.0473
(((((((........)))))))	chr2:209118467-209118807(-)$1	1	2	24	16.0853
(((((((.........))))))	chr17:31065268-31065547(-)$1	1	194	216	9.9294
(((((((........)))))))	chr7:140051096-140051397(-)$1	1	264	286	16.0853
(((((((........))).)))	chr6:91260111-91260385(-)$1	1	150	172	14.8613
(((((((........)))))))	chr17:37590458-37590706(-)$1	1	221	243	13.5123
.((((((........)))))).	chr2:38804471-38804722(-)$1	1	63	85	14.0160
(..((.(........)))..))	chr18:13057609-13057862(+)$1	1	169	191	14.1954
(((((((........)))))))	chr1:211447431-211447703(+)$1	1	115	137	15.6757
.(((.((........)).))).	chr1:32403281-32403532(-)$1	1	140	162	14.7322
(((((((.........))))))	chr17:19861756-19862028(-)$1	1	126	148	9.9294
(((((((........))..)))	chr12:46760775-46761080(-)$1	1	5	27	14.9979
(((..((........)).))))	chr3:50099262-50099539(+)$1	1	161	183	13.8823
.((((((........))))))(	chr12:57905785-57906091(+)$1	1	232	254	13.0440
((((.((........)))))))	chr2:48025632-48025884(+)$1	1	186	208	14.1355
(..((((........))))..)	chr6:43594517-43594826(-)$1	1	152	174	13.5894
(...(((........)))...)	chr1:52212267-52212569(+)$1	1	56	78	15.5546
))(((((........)))))((	chr2:70516320-70516639(-)$1	1	234	256	14.1235
(((.(((........)))..))	chr7:107531622-107531875(+)$1	1	215	237	15.2883
(...(((........)))...)	chr6:43594027-43594270(-)$1	1	10	32	15.5546
(((((((........)))))))	chr17:62499847-62500121(-)$1	1	238	260	16.0853
(((((.(........).)))))	chr3:183860462-183860780(+)$1	1	294	316	14.2975
((.((((........)))).))	chr2:234754257-234754577(-)$1	1	174	196	13.5456
(((((((........)))))))	chr2:70143098-70143393(+)$1	1	160	182	16.0853
(....((........))...))	chr9:138773525-138773793(-)$1	1	119	141	14.4821
.(((..(........)..))).	chr12:56680125-56680396(-)$1	1	235	257	14.5834
(...(((........)))))))	chr2:70451615-70451915(-)$1	1	160	182	14.5955
((..(.(........).)..))	chr18:33720983-33721226(+)$1	1	218	240	14.5969
(((((((........)))))))	chr5:10255943-10256196(+)$1	1	8	30	16.0853
((((.((........)).))))	chr8:124796572-124796848(+)$1	1	72	94	14.3738
(((((((........)))))))	chr7:30639550-30639797(+)$1	1	223	245	15.6757
(((.(((........))).)))	chr6:136600886-136601137(-)$1	1	69	91	16.1210
....(((........)))....	chr15:58925419-58925687(-)$1	1	179	201	14.0757
(((((((........)))))))	chr5:175782605-175782861(-)$1	1	138	160	16.0853
(((((((........)))))))	chr14:73577420-73577739(+)$1	1	37	59	16.0853
((.((((........)))).))	chr21:45212463-45212756(+)$1	1	125	147	14.2508
.((((((........)))))))	chr2:182763491-182763746(+)$1	1	58	80	14.2279
((..(((........)))..))	chr5:137904481-137904720(-)$1	1	132	154	14.9674
(((((((........)))))))	chr3:167437922-167438187(-)$1	1	149	171	16.0853
(((((.(........)))))))	chr15:79170494-79170755(+)$1	1	100	122	16.1257
(((((((........)))))))	chr7:151900024-151900266(-)$1	1	84	106	16.0853
(((((((........)))))).	chr5:10254108-10254415(+)$1	1	140	162	14.3008
.((((((........)))))).	chr2:38804550-38804807(-)$1	1	148	170	14.0160
(.(((((........)))))))	chr17:73142616-73142893(-)$1	1	222	244	13.9587
(((((((........))).)))	chr3:195780303-195780546(-)$1	1	55	77	14.2442
(((((((.........))))))	chr2:54112769-54113014(-)$1	1	18	40	9.9294
(((((((........)))))..	chr3:197023927-197024226(-)$1	1	172	194	13.5037
(((((((........)))))..	chr5:137909404-137909638(-)$1	1	197	219	13.7895
(((((.(........)))))))	chr14:70235887-70236146(+)$1	1	25	47	13.9863
(((..((........))..)))	chr2:70456073-70456344(-)$1	1	214	236	14.4482
.((..((........))....)	chr1:160969030-160969348(-)$1	1	260	282	13.8910
(((((((........)))))))	chr7:150066642-150066894(+)$1	1	125	147	16.0853
.((.(((........))))).)	chr18:33749904-33750169(+)$1	1	180	202	14.1426
((((.((........)).))))	chr17:43182840-43183113(+)$1	1	24	46	15.5795

#PSSM
g : 0.33	d : 0.12	f : 0.07	e : 0.07	c : 0.07	[ : 0.07	i : 0.05	a : 0.05	h : 0.03	! : 0.03	: : 0.01	$ : 0.01	# : 0.01	
g : 0.33	f : 0.14	d : 0.09	e : 0.07	c : 0.07	i : 0.05	" : 0.05	h : 0.03	! : 0.03	b : 0.03	# : 0.01	$ : 0.01	[ : 0.01	
g : 0.29	f : 0.14	e : 0.12	! : 0.07	i : 0.05	c : 0.05	" : 0.05	h : 0.03	d : 0.03	[ : 0.03	b : 0.03	# : 0.01	$ : 0.01	
g : 0.27	e : 0.12	f : 0.11	! : 0.09	[ : 0.07	d : 0.07	i : 0.05	" : 0.05	h : 0.03	c : 0.03	b : 0.01	# : 0.01	$ : 0.01	
g : 0.25	c : 0.20	f : 0.09	e : 0.09	[ : 0.07	! : 0.07	i : 0.05	d : 0.05	h : 0.03	b : 0.01	# : 0.01	a : 0.01	
g : 0.24	c : 0.20	b : 0.16	f : 0.09	[ : 0.09	e : 0.07	d : 0.05	i : 0.03	h : 0.01	! : 0.01	
g : 0.24	c : 0.20	b : 0.16	a : 0.11	f : 0.09	e : 0.07	d : 0.05	i : 0.03	h : 0.01	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
c : 0.20	g : 0.18	b : 0.16	a : 0.11	f : 0.09	e : 0.07	r : 0.05	d : 0.05	i : 0.03	h : 0.01	
g : 0.25	c : 0.20	b : 0.18	f : 0.09	e : 0.07	d : 0.05	h : 0.03	i : 0.03	] : 0.03	2 : 0.01	
g : 0.25	c : 0.20	e : 0.11	f : 0.09	] : 0.07	2 : 0.05	d : 0.05	h : 0.03	i : 0.03	b : 0.01	3 : 0.01	a : 0.01	4 : 0.01	
g : 0.27	f : 0.12	2 : 0.11	e : 0.11	d : 0.09	] : 0.05	3 : 0.05	h : 0.03	i : 0.03	c : 0.03	4 : 0.03	b : 0.01	
g : 0.29	f : 0.14	e : 0.12	2 : 0.09	i : 0.05	d : 0.05	3 : 0.05	h : 0.03	c : 0.03	] : 0.03	4 : 0.03	b : 0.01	
g : 0.31	f : 0.14	d : 0.11	e : 0.09	c : 0.07	i : 0.05	3 : 0.05	h : 0.03	4 : 0.03	2 : 0.01	a : 0.01	> : 0.01	] : 0.01	
g : 0.31	d : 0.12	e : 0.09	f : 0.05	h : 0.05	c : 0.05	i : 0.05	] : 0.05	a : 0.05	6 : 0.03	b : 0.03	4 : 0.01	> : 0.01	3 : 0.01	

#score	784.6339587303086
#seq	54
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_transcript_m1_run1.txt

#BEAR
gggg!!ggggggg[bbmmmmbbggggggg22gggg	chr2:3244328-3244582(-)$1	254	164	199	12.7926
##eeeeebba!!cccooooooccc22a]bb]eeee	chr2:232577052-232577316(+)$1	264	181	216	11.5783
::iiiiiiiii!!cccmmmmccc22iiiiiiiii:	chr16:85673088-85673343(+)$1	255	219	254	13.2296
!dddd[bb"""eeeeemmmmeeeee333bb]dddd	chr7:1064799-1065034(-)$1	235	150	185	10.8725
dd!!bb"""bb[acccnnnnnccc]a]bb333bb2	chr3:37370353-37370591(+)$1	238	94	129	10.2707
ddggggggg[ccc[bblllbbccc22ggggggg]d	chr7:933367-933623(+)$1	256	152	187	11.6240
::==========[cccmmmmccc]==========e	chrM:14374-14602(-)$1	228	100	135	14.7731
!!eeeee[a"""ddddmmmmdddd22a]eeeee22	chr7:1059351-1059615(-)$1	264	171	206	13.1742
iiiiiiiii"""dddd####============[ee	chr12:133372334-133372566(-)$1	232	22	57	11.6773
ff####bb[ddddcccmmmmccc]dddd]bb333f	chr19:37500403-37500660(+)$1	257	168	203	11.0771
====[a[cccbb!!bbmmmmbb4444bb]ccc]a=	chr11:71718573-71718834(-)$1	261	170	205	12.7455
!!==============mmmm==============4	chr13:115007603-115007871(+)$1	268	142	177	17.0480
fffff[eeeee[ddddmmmmdddd333eeeeefff	chr3:15064606-15064870(+)$1	264	16	51	11.0188
[ccc!!ccc[ccc[bbmmmmbbcccccc22cccdd	chr12:133129975-133130253(+)$1	278	231	266	12.0111
Deeeeeggggggg!!ammmma22ggggggg333ee	chr16:89970646-89970937(+)$1	291	253	288	11.3986
c[dddd####ffffffmmmmffffff333dddd22	chr17:38560616-38560843(-)$1	227	79	114	10.6845
eeeee"""gggggggooooooggggggg333eeee	chr22:19966546-19966791(-)$1	245	146	181	11.4601
iiiiiiii####cccooooooccc333iiiiiiii	chr19:10406546-10406834(+)$1	288	18	53	15.2293
cc!!bb[ccc!!ddddmmmmddddcccbb]ccc::	chr9:131023637-131023898(-)$1	261	161	196	10.5899
dd"""eeeee"""cccmmmmccc4444eeeee>>>	chr15:51772721-51772991(-)$1	270	103	138	12.9509
[ccc[==========nnnnn==========]ccc]	chr2:242192707-242192968(-)$1	261	38	73	13.7030
===========[ddddmmmmdddd]==========	chr6:52137003-52137248(-)$1	245	155	190	16.1795
ee"""a[bb[bbddddmmmmdddd22bb]bb]a]e	chr12:132445031-132445279(+)$1	248	151	186	11.4431
ccc[eeeee####cccmmmmccc4444eeeee]cc	chr14:56106999-56107254(+)$1	255	195	230	13.5915
"a!!eeeee[ddddccclllccc22ddddeeeee2	chr11:35684483-35684749(+)$1	266	184	219	10.3636
f[dddd[bb"""cccnnnnnccc333bb]dddd33	chr19:10262377-10262623(-)$1	246	106	141	11.5756
==========!!arrrrrrrrra22==========	chrX:153055168-153055427(-)$1	259	153	188	12.7768
bb==========!!bbmmmmbb==========22b	chr7:1056501-1056739(-)$1	238	186	221	14.9477
###ccc[ccc!!eeeeellleeeeeccc]cccggg	chr7:5569349-5569639(-)$1	290	147	182	10.8391
iiiiiiiii[ffffffmmmmffffff]iiiiiiii	chr2:3243849-3244117(-)$1	268	73	108	13.0004
==========ffffffmmmmffffff]========	chr19:2200130-2200382(+)$1	252	188	223	13.7831
cc!!eeeee####cccmmmmccc333eeeee22cc	chr6:31926050-31926295(-)$1	245	182	217	13.7828
ggggggg[a!!bb[bbmmmmbb]bb]a]ggggggg	chr19:50156299-50156566(+)$1	267	137	172	12.3400
ee===========[bbmmmmbb]===========5	chr16:85663332-85663582(+)$1	250	18	53	14.9027
ggg[a[bb####bb[ammmma]bb]bb]agggggg	chr16:2281949-2282206(+)$1	257	119	154	12.3750
ddd[dddd[ccc[cccmmmmccc22ccc]dddd22	chr22:20110920-20111193(+)$1	273	117	152	11.9895
####===========nnnnn===========hhhh	chr5:96108245-96108538(+)$1	293	167	202	13.5578
bb[bb[ccc[ccccccmmmmccc]ccccccbbbbc	chr10:32319949-32320231(-)$1	282	135	170	11.1718
$$$$ggggggg[ddddmmmmdddd]ggggggg333	chr16:89967386-89967705(+)$1	319	141	176	13.7360
ggggggg[ccc[ddddmmmmddddcccggggggg:	chr15:44580979-44581234(+)$1	255	189	224	12.4427
ffffff[ccc"""cccmmmmccc]cccffffff::	chr5:79946945-79947194(-)$1	249	104	139	10.7456
a[dddd!!ccc[ddddmmmmdddd]ccc22dddd]	chr16:89028383-89028635(-)$1	252	103	138	12.0009
iiiiiiiiccc[aooooooa]ccciiiiiiiii##	chr10:75551890-75552201(+)$1	311	67	102	12.0171
================mmmm===============	chr2:3243924-3244159(-)$1	235	169	204	16.8492
eeee"""ccc"""ddddllldddd]ccc22eeeee	chr21:47841786-47842015(+)$1	229	31	66	11.1359
dddiiiiiiiii!!bboooooobb]iiiiiiiii]	chr2:61408354-61408562(+)$1	208	89	124	12.9291
$$$$ggggggg[cccooooooccc]ggggggg333	chr3:126710337-126710597(+)$1	260	118	153	13.3632
gggggg[a$$$$$cccmmmmccc22aggggggg:c	chr16:88564528-88564770(+)$1	242	47	82	13.0992
"dddd!!bb"""ddddoooooodddd22bb22ddd	chr16:85660264-85660501(+)$1	237	187	222	9.8514
a[dddd==========mmmm==========333dd	chr2:3243666-3243963(-)$1	297	122	157	15.0888
!a[a[============lll============22a	chr7:5569873-5570167(-)$1	294	224	259	15.2147
$$$$===========nnnnn===========22gg	chr5:65474543-65474846(+)$1	303	256	291	13.3909
!eeeee[a!!ccc!!ammmma22ccc22aeeeee]	chr8:145533896-145534162(+)$1	266	186	221	11.9430

#otherMatches

#Seq PSSM
UUCUUUAGGAGGGAUCUGCUGGCUUUUCUUUAGGA	chr2:3244328-3244582(-)$1	254	164	199	12.7926
CUGGCUUGAGAAGAAGGGGGGUUUGGCAUCUGGGU	chr2:232577052-232577316(+)$1	264	181	216	11.5783
CGGGCCUGCCCAGUGUCUCUGCAGAGGGCAGGCCG	chr16:85673088-85673343(+)$1	255	219	254	13.2296
CGCCACUCCAGUGAUGAAGCCGUUAGCAGACUGGC	chr7:1064799-1065034(-)$1	235	150	185	10.8725
UAUUAGAUAAGGCCCAGGAGGUGGAGGCUGAACUU	chr3:37370353-37370591(+)$1	238	94	129	10.2707
UGCCUGUGCCUUGCAGUACCUCGACCGCAUAGGAC	chr7:933367-933623(+)$1	256	152	187	11.6240
UUUAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUAU	chrM:14374-14602(-)$1	228	100	135	14.7731
CAGCCCCCCACACUCCAUCAGGAGAAGAGGGGUCA	chr7:1059351-1059615(-)$1	264	171	206	13.1742
GCAAGGAGGAGCUUGACAGAGGAGCAAGACGCUUG	chr12:133372334-133372566(-)$1	232	22	57	11.6773
gcucauguuucagugaauuuucagcugacaccaug	chr19:37500403-37500660(+)$1	257	168	203	11.0771
GGAGUGGACUGAAAGGAAGGCCCAGGUCAAGUGCU	chr11:71718573-71718834(-)$1	261	170	205	12.7455
GCACAAGAAGGUUUGGAAACUCAGGCUUUUUUGUU	chr13:115007603-115007871(+)$1	268	142	177	17.0480
AGUAAUGGAUUUGGGGUUUUCCCUUGUGGUUUUUA	chr3:15064606-15064870(+)$1	264	16	51	11.0188
AUGACCACCACGGAGCAAGCGCCCGGGUCCUCAGA	chr12:133129975-133130253(+)$1	278	231	266	12.0111
ccggcuugugccugggaggucaaagguacagugag	chr16:89970646-89970937(+)$1	291	253	288	11.3986
UAAUACUAUUUGGUCCUUCAGGAUUACUUGUAUGG	chr17:38560616-38560843(-)$1	227	79	114	10.6845
GGUGCAUAUGGUCAGCACAGAUUGGCCAAUCGCAC	chr22:19966546-19966791(-)$1	245	146	181	11.4601
GUGGUGGAAACUUGACCCAAUUCACAAUCCACUGU	chr19:10406546-10406834(+)$1	288	18	53	15.2293
AGCAGGUGAGACCUGACCCUUCAGCUCCCCCUCAa	chr9:131023637-131023898(-)$1	261	161	196	10.5899
GAGCAUGCAGAAAGACGAAAGUCGUGGUUGCAGAA	chr15:51772721-51772991(-)$1	270	103	138	12.9509
UUGGUUUUGGUGUGGUAGGUUCACAUCGAGUUCAC	chr2:242192707-242192968(-)$1	261	38	73	13.7030
UGCCUGGGGGAGCCUAGGCUUGGGGUCCCUUAGGU	chr6:52137003-52137248(-)$1	245	155	190	16.1795
CCCCAGAACGUCCAGCAUCAGCUGCAGAGGUCCAG	chr12:132445031-132445279(+)$1	248	151	186	11.4431
AAUUUCAAUUUGCGUAUUCUUAUUUUCAUUGAUAU	chr14:56106999-56107254(+)$1	255	195	230	13.5915
UGGAGUGGGCGCGGCCUUCGAGGAACUGCCUCACG	chr11:35684483-35684749(+)$1	266	184	219	10.3636
CAGCAGCCUGAGUGUGGGAAAUGUAAAGCCUGCAA	chr19:10262377-10262623(-)$1	246	106	141	11.5756
CAUGUGUACCAGUGGACUUUGAAGAGGUGCACGUG	chrX:153055168-153055427(-)$1	259	153	188	12.7768
gugcgcuggcgugugcugcugugcgcuggugugug	chr7:1056501-1056739(-)$1	238	186	221	14.9477
CCUGGCUUCCUGCCGCGCGCCGCGGGGACGCCUCC	chr7:5569349-5569639(-)$1	290	147	182	10.8391
UUCCUGAGGAAGAGUCUGCUGGCUUUGCUUUAGGA	chr2:3243849-3244117(-)$1	268	73	108	13.0004
ACUAUGAGGGCUGCUCGAGGGAGCGGCCCCUCGUG	chr19:2200130-2200382(+)$1	252	188	223	13.7831
ACAGACUCUGCACUCUGAGAAGAUAUGGGGUGAGU	chr6:31926050-31926295(-)$1	245	182	217	13.7828
GGUGGCAGCGGGGGCAGUGGUGGCCAGGUGUCGCU	chr19:50156299-50156566(+)$1	267	137	172	12.3400
UUUGGAGACUCUGGGUGAAGAUGCAGAGUCUCUGU	chr16:85663332-85663582(+)$1	250	18	53	14.9027
GGGUGUGGCUCAGAGCAGCAGGUCCCCUCCCCUGG	chr16:2281949-2282206(+)$1	257	119	154	12.3750
GGUGUUCGGGCAGUGUAAGAGCAGAUGUGUGAGGU	chr22:20110920-20111193(+)$1	273	117	152	11.9895
AACAAUUGUUCUGGGUGAUUUCUAGAAUGGUUUUU	chr5:96108245-96108538(+)$1	293	167	202	13.5578
GAAGAACUUGCUGUCAAUUAUGAUCAGAAGUCUCA	chr10:32319949-32320231(-)$1	282	135	170	11.1718
AAGGUCUCGGCAGCGCCGAGGUGUGGCCGAGAGGG	chr16:89967386-89967705(+)$1	319	141	176	13.7360
GGGCUUCUGCCUGCAGGUGUCUGCGGCGAGGCCCC	chr15:44580979-44581234(+)$1	255	189	224	12.4427
GUGCGUAGUUGAACAGGGCCCUGAAGCGCGUACAC	chr5:79946945-79947194(-)$1	249	104	139	10.7456
GUUACUAUGCAGUGGGAAUGUCCAGUGCUGAGUGU	chr16:89028383-89028635(-)$1	252	103	138	12.0009
AGGGGGUCCCCUCAUCACAGCGGGGUCCCCGCCGC	chr10:75551890-75552201(+)$1	311	67	102	12.0171
UUCUUUAGGAAGAGUCUGCUGGCUUUUCUUGAGGA	chr2:3243924-3244159(-)$1	235	169	204	16.8492
CAGUGCGUCCCCUGGGGAACCCCCUGGAGAGCUGU	chr21:47841786-47842015(+)$1	229	31	66	11.1359
GCUCAUUUUAGGCAUCGUUAAAGAAUCUGGAGUGA	chr2:61408354-61408562(+)$1	208	89	124	12.9291
CAAAGGCUUGCGGCCGUCCCAGGUGGCAGGCCCAG	chr3:126710337-126710597(+)$1	260	118	153	13.3632
UGGGGAACACGGACCCACCUGGGGGGUCCCCAGAG	chr16:88564528-88564770(+)$1	242	47	82	13.0992
UGGGACACCAUAUUUAAUGGAGUAGAGAGGCCUCC	chr16:85660264-85660501(+)$1	237	187	222	9.8514
UGCUUUAGGAAGGGUCUACUGGCUUUUCCUUAGGA	chr2:3243666-3243963(-)$1	297	122	157	15.0888
AGGCGCGCUCCGGGGGUGCCGCUCUCGGGGCGGGG	chr7:5569873-5570167(-)$1	294	224	259	15.2147
UAGGAUCUAACAGCUUUUCCAGUUGUUAGAUGACU	chr5:65474543-65474846(+)$1	303	256	291	13.3909
ACUGAGGCAAGCCCACCUCGGAAGGCCAGCUCAGG	chr8:145533896-145534162(+)$1	266	186	221	11.9430

#DB
((((..(((((((.((....)))))))))..))))	chr2:3244328-3244582(-)$1	1	164	199	12.7926
..((((((((..(((......)))..).)).))))	chr2:232577052-232577316(+)$1	1	181	216	11.5783
..(((((((((..(((....)))..))))))))).	chr16:85673088-85673343(+)$1	1	219	254	13.2296
.((((.((...(((((....)))))...)).))))	chr7:1064799-1065034(-)$1	1	150	185	10.8725
((..((...((.((((.....))).).))...)).	chr3:37370353-37370591(+)$1	1	94	129	10.2707
(((((((((.(((.((...)))))..))))))).)	chr7:933367-933623(+)$1	1	152	187	11.6240
..((((((((((.(((....))).))))))))))(	chrM:14374-14602(-)$1	1	100	135	14.7731
..(((((.(...((((....))))..).)))))..	chr7:1059351-1059615(-)$1	1	171	206	13.1742
(((((((((...((((....((((((((((((.((	chr12:133372334-133372566(-)$1	1	22	57	11.6773
((....((.(((((((....))).)))).))...)	chr19:37500403-37500660(+)$1	1	168	203	11.0771
((((.(.(((((..((....))....)).))).))	chr11:71718573-71718834(-)$1	1	170	205	12.7455
..((((((((((((((....)))))))))))))).	chr13:115007603-115007871(+)$1	1	142	177	17.0480
(((((.(((((.((((....))))...))))))))	chr3:15064606-15064870(+)$1	1	16	51	11.0188
.(((..(((.(((.((....))))))))..)))))	chr12:133129975-133130253(+)$1	1	231	266	12.0111
)((((((((((((..(....)..)))))))...))	chr16:89970646-89970937(+)$1	1	253	288	11.3986
(.((((....((((((....))))))...))))..	chr17:38560616-38560843(-)$1	1	79	114	10.6845
(((((...(((((((......)))))))...))))	chr22:19966546-19966791(-)$1	1	146	181	11.4601
((((((((....(((......)))...))))))))	chr19:10406546-10406834(+)$1	1	18	53	15.2293
((..((.(((..((((....))))))))).)))..	chr9:131023637-131023898(-)$1	1	161	196	10.5899
((...(((((...(((....)))....)))))...	chr15:51772721-51772991(-)$1	1	103	138	12.9509
.(((.((((((((((.....)))))))))).))).	chr2:242192707-242192968(-)$1	1	38	73	13.7030
(((((((((((.((((....)))).))))))))))	chr6:52137003-52137248(-)$1	1	155	190	16.1795
((...(.((.((((((....))))..)).)).).)	chr12:132445031-132445279(+)$1	1	151	186	11.4431
(((.(((((....(((....)))....))))).))	chr14:56106999-56107254(+)$1	1	195	230	13.5915
.(..(((((.(((((((...)))..))))))))).	chr11:35684483-35684749(+)$1	1	184	219	10.3636
(.((((.((...(((.....)))...)).))))..	chr19:10262377-10262623(-)$1	1	106	141	11.5756
((((((((((..(.........)..))))))))))	chrX:153055168-153055427(-)$1	1	153	188	12.7768
((((((((((((..((....))))))))))))..)	chr7:1056501-1056739(-)$1	1	186	221	14.9477
...(((.(((..(((((...)))))))).))))))	chr7:5569349-5569639(-)$1	1	147	182	10.8391
(((((((((.((((((....)))))).))))))))	chr2:3243849-3244117(-)$1	1	73	108	13.0004
((((((((((((((((....)))))).))))))))	chr19:2200130-2200382(+)$1	1	188	223	13.7831
((..(((((....(((....)))...)))))..))	chr6:31926050-31926295(-)$1	1	182	217	13.7828
(((((((.(..((.((....)).)).).)))))))	chr19:50156299-50156566(+)$1	1	137	172	12.3400
(((((((((((((.((....)).))))))))))).	chr16:85663332-85663582(+)$1	1	18	53	14.9027
(((.(.((....((.(....).)).)).)))))))	chr16:2281949-2282206(+)$1	1	119	154	12.3750
(((.((((.(((.(((....)))..))).))))..	chr22:20110920-20111193(+)$1	1	117	152	11.9895
....(((((((((((.....)))))))))))))))	chr5:96108245-96108538(+)$1	1	167	202	13.5578
((.((.(((.((((((....))).)))))))))))	chr10:32319949-32320231(-)$1	1	135	170	11.1718
....(((((((.((((....)))).)))))))...	chr16:89967386-89967705(+)$1	1	141	176	13.7360
(((((((.(((.((((....)))))))))))))).	chr15:44580979-44581234(+)$1	1	189	224	12.4427
((((((.(((...(((....))).)))))))))..	chr5:79946945-79947194(-)$1	1	104	139	10.7456
(.((((..(((.((((....)))).)))..)))).	chr16:89028383-89028635(-)$1	1	103	138	12.0009
))))))))(((.(......).)))(((((((((..	chr10:75551890-75552201(+)$1	1	67	102	12.0171
((((((((((((((((....)))))))))))))))	chr2:3243924-3244159(-)$1	1	169	204	16.8492
((((...(((...((((...)))).)))..)))))	chr21:47841786-47842015(+)$1	1	31	66	11.1359
((((((((((((..((......)).))))))))).	chr2:61408354-61408562(+)$1	1	89	124	12.9291
....(((((((.(((......))).)))))))...	chr3:126710337-126710597(+)$1	1	118	153	13.3632
((((((.(.....(((....)))..)))))))).(	chr16:88564528-88564770(+)$1	1	47	82	13.0992
.((((..((...((((......))))..))..)))	chr16:85660264-85660501(+)$1	1	187	222	9.8514
(.((((((((((((((....))))))))))...))	chr2:3243666-3243963(-)$1	1	122	157	15.0888
.(.(.((((((((((((...))))))))))))..)	chr7:5569873-5570167(-)$1	1	224	259	15.2147
....(((((((((((.....)))))))))))..))	chr5:65474543-65474846(+)$1	1	256	291	13.3909
.(((((.(..(((..(....)..)))..)))))).	chr8:145533896-145534162(+)$1	1	186	221	11.9430

#PSSM
g : 0.09	! : 0.09	d : 0.09	= : 0.09	i : 0.07	f : 0.07	c : 0.07	e : 0.07	# : 0.05	$ : 0.05	: : 0.03	[ : 0.03	" : 0.03	b : 0.03	a : 0.03	D : 0.01	
d : 0.13	e : 0.11	g : 0.09	= : 0.09	c : 0.09	i : 0.07	[ : 0.07	# : 0.05	f : 0.05	$ : 0.05	: : 0.03	! : 0.03	a : 0.03	b : 0.03	
= : 0.16	d : 0.15	g : 0.11	e : 0.11	i : 0.09	! : 0.07	# : 0.05	c : 0.05	$ : 0.05	f : 0.03	" : 0.03	[ : 0.03	
= : 0.16	e : 0.11	i : 0.11	d : 0.11	g : 0.09	! : 0.07	c : 0.05	[ : 0.05	$ : 0.05	# : 0.03	f : 0.03	" : 0.03	b : 0.01	a : 0.01	
= : 0.18	e : 0.15	d : 0.13	i : 0.11	g : 0.11	b : 0.05	[ : 0.05	" : 0.05	! : 0.03	f : 0.03	# : 0.01	c : 0.01	a : 0.01	
= : 0.22	e : 0.15	i : 0.11	g : 0.11	d : 0.09	[ : 0.07	! : 0.05	b : 0.03	a : 0.03	" : 0.03	# : 0.01	c : 0.01	f : 0.01	
= : 0.24	[ : 0.15	g : 0.13	e : 0.13	i : 0.11	b : 0.05	" : 0.05	c : 0.03	! : 0.03	# : 0.01	d : 0.01	
= : 0.24	b : 0.13	c : 0.13	i : 0.11	g : 0.09	e : 0.09	[ : 0.05	" : 0.03	a : 0.03	# : 0.01	d : 0.01	! : 0.01	
= : 0.24	c : 0.18	g : 0.11	e : 0.09	b : 0.07	i : 0.07	# : 0.05	" : 0.03	a : 0.03	[ : 0.03	$ : 0.01	! : 0.01	
= : 0.24	c : 0.16	[ : 0.11	g : 0.09	" : 0.09	# : 0.09	i : 0.03	e : 0.03	! : 0.03	a : 0.01	b : 0.01	d : 0.01	$ : 0.01	
= : 0.20	" : 0.15	c : 0.15	g : 0.09	! : 0.09	# : 0.07	b : 0.05	f : 0.05	i : 0.03	d : 0.03	e : 0.01	$ : 0.01	
= : 0.18	[ : 0.15	" : 0.13	! : 0.09	c : 0.09	# : 0.07	g : 0.05	b : 0.05	f : 0.05	d : 0.03	e : 0.01	i : 0.01	$ : 0.01	
d : 0.22	c : 0.15	= : 0.15	! : 0.07	g : 0.05	a : 0.05	f : 0.05	" : 0.05	e : 0.03	[ : 0.03	# : 0.03	b : 0.03	$ : 0.01	
c : 0.28	d : 0.22	= : 0.13	[ : 0.09	! : 0.09	f : 0.05	e : 0.03	g : 0.01	r : 0.01	b : 0.01	o : 0.01	
c : 0.30	d : 0.20	b : 0.15	= : 0.13	f : 0.05	e : 0.03	! : 0.03	g : 0.01	r : 0.01	[ : 0.01	o : 0.01	
c : 0.22	d : 0.20	b : 0.15	o : 0.09	= : 0.07	n : 0.07	a : 0.05	f : 0.05	e : 0.03	r : 0.01	
m : 0.64	o : 0.13	n : 0.09	l : 0.01	# : 0.01	c : 0.01	r : 0.01	e : 0.01	d : 0.01	= : 0.01	
m : 0.64	o : 0.13	n : 0.09	l : 0.09	# : 0.01	r : 0.01	
m : 0.64	o : 0.13	n : 0.09	l : 0.09	# : 0.01	r : 0.01	
m : 0.64	o : 0.11	n : 0.09	l : 0.07	b : 0.01	# : 0.01	r : 0.01	a : 0.01	
c : 0.22	d : 0.16	= : 0.15	b : 0.13	o : 0.11	a : 0.05	f : 0.05	e : 0.03	n : 0.01	r : 0.01	] : 0.01	
c : 0.33	d : 0.16	= : 0.15	b : 0.11	f : 0.05	e : 0.03	2 : 0.03	o : 0.03	g : 0.01	r : 0.01	] : 0.01	
c : 0.35	d : 0.18	= : 0.16	f : 0.05	g : 0.03	e : 0.03	2 : 0.03	] : 0.03	b : 0.03	4 : 0.01	a : 0.01	
d : 0.18	= : 0.18	c : 0.15	2 : 0.09	] : 0.07	g : 0.05	4 : 0.05	f : 0.05	b : 0.05	e : 0.03	3 : 0.03	
= : 0.20	2 : 0.16	] : 0.15	c : 0.11	3 : 0.07	g : 0.05	4 : 0.05	f : 0.05	e : 0.03	d : 0.03	b : 0.01	i : 0.01	
= : 0.24	c : 0.18	g : 0.09	3 : 0.09	2 : 0.07	i : 0.05	d : 0.05	4 : 0.05	f : 0.05	a : 0.03	] : 0.01	b : 0.01	
= : 0.24	c : 0.16	g : 0.13	3 : 0.07	b : 0.07	a : 0.05	i : 0.05	] : 0.05	d : 0.03	4 : 0.03	2 : 0.03	e : 0.01	
= : 0.26	g : 0.15	c : 0.11	i : 0.09	b : 0.09	] : 0.07	e : 0.07	3 : 0.03	d : 0.03	2 : 0.03	f : 0.01	
= : 0.26	g : 0.15	] : 0.11	b : 0.09	i : 0.09	e : 0.09	2 : 0.05	3 : 0.03	a : 0.03	d : 0.01	c : 0.01	f : 0.01	
= : 0.26	g : 0.15	e : 0.13	b : 0.09	i : 0.09	2 : 0.07	c : 0.05	d : 0.05	3 : 0.03	] : 0.01	f : 0.01	
= : 0.22	e : 0.15	g : 0.13	i : 0.09	3 : 0.07	c : 0.07	d : 0.07	] : 0.05	b : 0.05	2 : 0.03	f : 0.01	
= : 0.18	e : 0.16	g : 0.15	i : 0.09	d : 0.09	c : 0.09	3 : 0.07	2 : 0.05	] : 0.01	h : 0.01	b : 0.01	f : 0.01	
g : 0.13	= : 0.13	e : 0.11	d : 0.11	i : 0.09	3 : 0.09	2 : 0.07	c : 0.05	b : 0.03	] : 0.03	f : 0.03	[ : 0.01	> : 0.01	a : 0.01	h : 0.01	
e : 0.13	= : 0.13	g : 0.11	d : 0.09	2 : 0.09	i : 0.07	3 : 0.07	: : 0.05	c : 0.05	b : 0.03	] : 0.03	a : 0.01	f : 0.01	> : 0.01	h : 0.01	# : 0.01	
e : 0.13	g : 0.09	d : 0.09	2 : 0.09	= : 0.09	: : 0.07	] : 0.07	c : 0.07	3 : 0.05	f : 0.03	i : 0.03	4 : 0.01	> : 0.01	b : 0.01	5 : 0.01	h : 0.01	# : 0.01	a : 0.01	

#score	672.3393685507615
#seq	53
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_CDS_m3_run2.txt

#BEAR
ggggg[ddddoooooodddd]gg	chr12:19592648-19592928(+)$1	280	56	79	11.4784
e!!a[eeeeeooooooeeeee]a	chrX:20284607-20284883(-)$1	276	189	212	10.8991
ciiiiiiiiiooooooiiiiiii	chr16:4393107-4393367(-)$1	260	120	143	13.0764
dddd"""cccooooooccc4444	chr12:123950625-123950959(+)$1	334	151	174	11.3902
eeee"""cccooooooccc]eee	chr17:27076844-27077127(+)$1	283	174	197	11.6395
ee:gggggggooooooggggggg	chr18:9134103-9134358(+)$1	255	170	193	11.7668
ccc[ccc[bboooooobbccccc	chr14:23567026-23567374(+)$1	348	82	105	11.2630
$$hhhhhhhhoooooohhhhhhh	chr1:113244005-113244264(-)$1	259	189	212	10.9663
dddd[bbcccooooooccc]bb]	chr6:26056274-26056515(-)$1	241	102	125	10.8953
::hhhhhhhhoooooohhhhhhh	chr11:75115057-75115304(+)$1	247	204	227	9.7974
b!!gggggggnnnnnggggggg4	chr1:24021054-24021277(+)$1	223	54	77	8.8733
B::gggggggooooooggggggg	chr7:73111835-73112106(+)$1	271	191	214	10.5705
b!!gggggggnnnnnggggggg4	chr1:24021077-24021297(+)$1	220	31	54	8.8733
[bb####cccooooooccc>>>>	chr2:85806059-85806352(+)$1	293	71	94	10.9762
!!ggggggg[ammmmaggggggg	chr19:46116698-46116970(-)$1	272	164	187	8.6788
diiiiiiiiiooooooiiiiiii	chr3:46963311-46963678(-)$1	367	271	294	12.9649
eee"""ddddoooooodddd]ee	chr7:73111906-73112125(+)$1	219	101	124	10.5460
[iiiiiiiiillliiiiiiiii]	chr1:44443564-44443901(+)$1	337	125	148	8.7320
c"""ffffffooooooffffff4	chr12:56553661-56553951(+)$1	290	221	244	10.5217
fffffff[bboooooobb]ffff	chrX:11316791-11317090(-)$1	299	33	56	9.9374
eee"""ddddoooooodddd22e	chr2:97541857-97542138(-)$1	281	204	227	10.4238
:::gggggggooooooggggggg	chr17:34171749-34172036(+)$1	287	139	162	10.5317
[iiiiiiiiiannnnna]iiiii	chr8:124194962-124195209(+)$1	247	7	30	9.2377
FFFFgggggggoooooogggggg	chr7:93628456-93628707(-)$1	251	227	250	9.4630
eee[ffffffooooooffffff2	chr13:48668992-48669264(-)$1	272	208	231	10.2450
fffff"""bboooooobb22fff	chr1:23695686-23695924(+)$1	238	156	179	9.8623
bb[ccc!!bboooooobb22ccc	chr10:73578282-73578523(-)$1	241	146	169	10.7207
ceeeee[cccooooooccc333e	chr19:581244-581506(+)$1	262	105	128	11.8083
:ccc[eeeeeooooooeeeee33	chr3:49052873-49053146(+)$1	273	204	227	10.3293
!!gggggggaooooooa]ggggg	chr16:30081229-30081444(+)$1	215	38	61	12.8854
$$$gggggggnnnnngggggggi	chr1:2125201-2125450(-)$1	249	44	67	8.3598
gggggg[cccoooooocccgggg	chr15:44085114-44085381(+)$1	267	121	144	13.0549
d[bb!!ddddoooooodddd22b	chr17:47021946-47022277(-)$1	331	210	233	10.2253
dbb!!eeeeeooooooeeeee22	chr12:57031908-57032243(-)$1	335	176	199	10.4718
"gggggggcccnnnnnccc]ggg	chr11:64010828-64011070(+)$1	242	82	105	9.0121
ggggggg[bboooooobbggggg	chr2:54197729-54198042(-)$1	313	227	250	12.1672
2bbgggggggooooooggggggg	chr1:52256141-52256420(-)$1	279	134	157	12.0681
b[bb!!ddddoooooodddd22b	chr19:42364762-42365014(+)$1	252	4	27	10.2107
ccc[a!!cccnnnnnccc]a]cc	chr19:932388-932653(+)$1	265	211	234	8.4884
hhhhhhhh[aooooooahhhhhh	chr6:41903504-41903757(-)$1	253	172	195	10.7419
###gggggggooooooggggggg	chr19:42752565-42752802(-)$1	237	108	131	12.9299
dd!!bb[cccooooooccc]bb2	chr1:110950155-110950401(-)$1	246	76	99	11.6133
===========lll=========	chr1:44441881-44442140(+)$1	259	109	132	9.0098
a[bbbbddddoooooodddd]bb	chr1:156104547-156104807(+)$1	260	193	216	9.6441
E:hhhhhhhhoooooohhhhhhh	chr11:67817938-67818180(+)$1	242	9	32	9.7240
fff####cccooooooccc4444	chr19:6739617-6739884(+)$1	267	159	182	11.4922
eeeeffffffooooooffffff2	chr19:11242017-11242252(+)$1	235	159	182	9.9449
dd!!bb[cccooooooccc]bb2	chr1:110950106-110950355(-)$1	249	30	53	11.6133
"dddd[ccc[aooooooa]ccc]	chr7:22852596-22852884(-)$1	288	129	152	10.2749
:iiiiiiiiinnnnniiiiiiii	chr2:86669117-86669426(+)$1	309	17	40	8.5644
GG:gggggggooooooggggggg	chr16:18812664-18812950(-)$1	286	23	46	11.1178
!hhhhhhhh[aooooooahhhhh	chr19:1103987-1104239(+)$1	252	178	201	10.1379
ccc[bb[cccoooooocccbb]c	chr16:11349093-11349350(-)$1	257	17	40	11.5018
#a[dddd[bboooooobb22ddd	chr1:197115423-197115672(-)$1	249	100	123	9.6854
dd"""eeeeeooooooeeeee22	chr17:34173984-34174286(+)$1	302	253	276	10.4907
::hhhhhhhhoooooohhhhhhh	chr14:68117819-68118154(-)$1	335	54	77	9.7974
ffffbb[cccooooooccc]bb>	chr1:44441378-44441621(+)$1	243	37	60	10.8498
ccc"""ddddoooooodddd333	chr20:30156917-30157233(+)$1	316	4	27	11.3396
::hhhhhhhhoooooohhhhhhh	chr11:8707214-8707481(+)$1	267	72	95	9.7974
gggggg[cccooooooccc]ggg	chr1:186282928-186283251(-)$1	323	19	42	13.1120
:gggggggbboooooobb333gg	chr2:217363900-217364137(+)$1	237	199	222	11.4051
====ddddbboooooobb]dddd	chr11:67379801-67380062(+)$1	261	44	67	9.9635

#otherMatches

#Seq PSSM
CCCGGGUUCGGCGGCGCGGGGCC	chr12:19592648-19592928(+)$1	280	56	79	11.4784
CGACAGCGCUGAGGUGAGUGCAG	chrX:20284607-20284883(-)$1	276	189	212	10.8991
GGCAGGGCCUUUGCACGGGCCUU	chr16:4393107-4393367(-)$1	260	120	143	13.0764
CUUCAGAGAUGACAGGAUCAAGG	chr12:123950625-123950959(+)$1	334	151	174	11.3902
UGGUUAUUUAUUUCCUUAGUGCC	chr17:27076844-27077127(+)$1	283	174	197	11.6395
UUAAUUUAUAUUGAACUGUAAAU	chr18:9134103-9134358(+)$1	255	170	193	11.7668
GUGUGUCUGGGGCAGACCGACCA	chr14:23567026-23567374(+)$1	348	82	105	11.2630
AUGCUGAAGGCUCCCAUUUUCAG	chr1:113244005-113244264(-)$1	259	189	212	10.9663
CUUGGUCUCAAGAGCCUGGUGAG	chr6:26056274-26056515(-)$1	241	102	125	10.8953
GAGAGUGCUUGGCAAAGGGCAUU	chr11:75115057-75115304(+)$1	247	204	227	9.7974
GAAGAUGACAAGGAAUGUUAUUG	chr1:24021054-24021277(+)$1	223	54	77	8.8733
GAGUGCCAGCCUGGGAGCUGGCA	chr7:73111835-73112106(+)$1	271	191	214	10.5705
GAAGAUGACAAGGAAUGUUAUUG	chr1:24021077-24021297(+)$1	220	31	54	8.8733
GGAGGAAGCCAGUGAAGGUGGAG	chr2:85806059-85806352(+)$1	293	71	94	10.9762
AGCCUCGAGUGAGUCCCUUGGGG	chr19:46116698-46116970(-)$1	272	164	187	8.6788
AUGGAUGAGGUCAGCUCCUUGUC	chr3:46963311-46963678(-)$1	367	271	294	12.9649
CACAGGCGCCAGGGCAGGUGAGU	chr7:73111906-73112125(+)$1	219	101	124	10.5460
UGGGUGGGGCCGUGCCUCACUUU	chr1:44443564-44443901(+)$1	337	125	148	8.7320
AAAUGGCACCGUCAUGGGUGCUG	chr12:56553661-56553951(+)$1	290	221	244	10.5217
AGCUUCCAGAGUCAGAUCAGGAA	chrX:11316791-11317090(-)$1	299	33	56	9.9374
CAUCAAGGCCAGAGGAGGCCACA	chr2:97541857-97542138(-)$1	281	204	227	10.4238
GGGGCUAUGGAGGAGACCGUGGU	chr17:34171749-34172036(+)$1	287	139	162	10.5317
GUCCUGGGAGCAGGCGGCCUCCC	chr8:124194962-124195209(+)$1	247	7	30	9.2377
UAAGUAUAUAACAAAUAUUAUAU	chr7:93628456-93628707(-)$1	251	227	250	9.4630
UGGGCCGGGGGACUGACCCCGGA	chr13:48668992-48669264(-)$1	272	208	231	10.2450
GGACGAACAGACUUACCUCCUGU	chr1:23695686-23695924(+)$1	238	156	179	9.8623
CAAUGUGAGUAGCUCAGCAGACA	chr10:73578282-73578523(-)$1	241	146	169	10.7207
GAGUUCCUCGCAGGGCCGGUCAG	chr19:581244-581506(+)$1	262	105	128	11.8083
ACGCACAGCUCUCAGAAGCUGCA	chr3:49052873-49053146(+)$1	273	204	227	10.3293
UGCAGGCCUCUGCCCUGAAGGCC	chr16:30081229-30081444(+)$1	215	38	61	12.8854
AGGGGUUUCCAGGGCGGGAGCCA	chr1:2125201-2125450(-)$1	249	44	67	8.3598
GAAAGCGCCGAGAUGACGGGCUU	chr15:44085114-44085381(+)$1	267	121	144	13.0549
CAUCGCCAAGAAGAAACUUGCAG	chr17:47021946-47022277(-)$1	331	210	233	10.2253
AACCCAAAAAGCUUCAUUUUUCU	chr12:57031908-57032243(-)$1	335	176	199	10.4718
GUCUUCCUGCAGGAUGUGUGAGG	chr11:64010828-64011070(+)$1	242	82	105	9.0121
AGCUGCUGCCCUACGCGGAGCGG	chr2:54197729-54198042(-)$1	313	227	250	12.1672
UACCCACCUUGGGGAGGAGGUGG	chr1:52256141-52256420(-)$1	279	134	157	12.0681
AAGGAUUGGGGUGGGGUCCGUGC	chr19:42364762-42365014(+)$1	252	4	27	10.2107
GCGGCGAUGGCGUUCCCAGGGUG	chr19:932388-932653(+)$1	265	211	234	8.4884
UGAAGGGGCGUCUGUUCCCCCUU	chr6:41903504-41903757(-)$1	253	172	195	10.7419
CCCCUCACCCCAAGGCGGGUGAG	chr19:42752565-42752802(-)$1	237	108	131	12.9299
GCUCGCGUCAAGUGACUGAGGCC	chr1:110950155-110950401(-)$1	246	76	99	11.6133
GCUCCUCCAUCAUUGGUGGAGGA	chr1:44441881-44442140(+)$1	259	109	132	9.0098
AGCUGGAGAAGACUUAUUCUGCC	chr1:156104547-156104807(+)$1	260	193	216	9.6441
UUGCAGAGCUGUCCGAGGUUCUG	chr11:67817938-67818180(+)$1	242	9	32	9.7240
AUUGGGGCACUGAGCUGUGGGUA	chr19:6739617-6739884(+)$1	267	159	182	11.4922
UUCUUCCUUUCCUCGUGAAGGAU	chr19:11242017-11242252(+)$1	235	159	182	9.9449
GCUCGCGUCAAGUGACUGAGGCC	chr1:110950106-110950355(-)$1	249	30	53	11.6133
CAGCGGACAGCAUGGAAGAUGUG	chr7:22852596-22852884(-)$1	288	129	152	10.2749
UUGCAGGGAGGAGCUCUUCCUGC	chr2:86669117-86669426(+)$1	309	17	40	8.5644
GGGGGCCGUCGGGAAGGGCGGCC	chr16:18812664-18812950(-)$1	286	23	46	11.1178
UGGGGCGGGCGCGCGAUCCCUGC	chr19:1103987-1104239(+)$1	252	178	201	10.1379
GGUAGCACACAACCAGGUGGCAG	chr16:11349093-11349350(-)$1	257	17	40	11.5018
cugccauggcgaaccggcgagug	chr1:197115423-197115672(-)$1	249	100	123	9.6854
ACUUUUGUACAUACUAGUGCAUU	chr17:34173984-34174286(+)$1	302	253	276	10.4907
CUUCUAUAGGGAAGGGUUUGUGG	chr14:68117819-68118154(-)$1	335	54	77	9.7974
AGAACUUCUCUCUACCGAGCAGC	chr1:44441378-44441621(+)$1	243	37	60	10.8498
GUUAUGAGGAGUCAAAUCCUAAG	chr20:30156917-30157233(+)$1	316	4	27	11.3396
AUUCUUCAGCAGAAGAGCUGAGG	chr11:8707214-8707481(+)$1	267	72	95	9.7974
AACUAGGGUAAGUGAAUACACUA	chr1:186282928-186283251(-)$1	323	19	42	13.1120
CACUUGCUCUUUCUGUGGCAAAG	chr2:217363900-217364137(+)$1	237	199	222	11.4051
CUGAUCCGCCACUUUCGGCCGGA	chr11:67379801-67380062(+)$1	261	44	67	9.9635

#DB
(((((.((((......)))).))	chr12:19592648-19592928(+)$1	1	56	79	11.4784
(..(.(((((......))))).)	chrX:20284607-20284883(-)$1	1	189	212	10.8991
)(((((((((......)))))))	chr16:4393107-4393367(-)$1	1	120	143	13.0764
((((...(((......)))....	chr12:123950625-123950959(+)$1	1	151	174	11.3902
((((...(((......))).)))	chr17:27076844-27077127(+)$1	1	174	197	11.6395
)).(((((((......)))))))	chr18:9134103-9134358(+)$1	1	170	193	11.7668
(((.(((.((......)))))))	chr14:23567026-23567374(+)$1	1	82	105	11.2630
..((((((((......)))))))	chr1:113244005-113244264(-)$1	1	189	212	10.9663
((((.(((((......))).)).	chr6:26056274-26056515(-)$1	1	102	125	10.8953
..((((((((......)))))))	chr11:75115057-75115304(+)$1	1	204	227	9.7974
(..(((((((.....))))))).	chr1:24021054-24021277(+)$1	1	54	77	8.8733
)..(((((((......)))))))	chr7:73111835-73112106(+)$1	1	191	214	10.5705
(..(((((((.....))))))).	chr1:24021077-24021297(+)$1	1	31	54	8.8733
.((....(((......)))....	chr2:85806059-85806352(+)$1	1	71	94	10.9762
..(((((((.(....))))))))	chr19:46116698-46116970(-)$1	1	164	187	8.6788
((((((((((......)))))))	chr3:46963311-46963678(-)$1	1	271	294	12.9649
(((...((((......)))).))	chr7:73111906-73112125(+)$1	1	101	124	10.5460
.(((((((((...))))))))).	chr1:44443564-44443901(+)$1	1	125	148	8.7320
(...((((((......)))))).	chr12:56553661-56553951(+)$1	1	221	244	10.5217
)((((((.((......)).))))	chrX:11316791-11317090(-)$1	1	33	56	9.9374
(((...((((......))))..)	chr2:97541857-97542138(-)$1	1	204	227	10.4238
...(((((((......)))))))	chr17:34171749-34172036(+)$1	1	139	162	10.5317
.((((((((((.....).)))))	chr8:124194962-124195209(+)$1	1	7	30	9.2377
))))(((((((......))))))	chr7:93628456-93628707(-)$1	1	227	250	9.4630
(((.((((((......)))))).	chr13:48668992-48669264(-)$1	1	208	231	10.2450
(((((...((......))..)))	chr1:23695686-23695924(+)$1	1	156	179	9.8623
((.(((..((......))..)))	chr10:73578282-73578523(-)$1	1	146	169	10.7207
((((((.(((......)))...)	chr19:581244-581506(+)$1	1	105	128	11.8083
.(((.(((((......)))))..	chr3:49052873-49053146(+)$1	1	204	227	10.3293
..((((((((......).)))))	chr16:30081229-30081444(+)$1	1	38	61	12.8854
...(((((((.....))))))))	chr1:2125201-2125450(-)$1	1	44	67	8.3598
((((((.(((......)))))))	chr15:44085114-44085381(+)$1	1	121	144	13.0549
(.((..((((......))))..)	chr17:47021946-47022277(-)$1	1	210	233	10.2253
(((..(((((......)))))..	chr12:57031908-57032243(-)$1	1	176	199	10.4718
.((((((((((.....))).)))	chr11:64010828-64011070(+)$1	1	82	105	9.0121
(((((((.((......)))))))	chr2:54197729-54198042(-)$1	1	227	250	12.1672
.))(((((((......)))))))	chr1:52256141-52256420(-)$1	1	134	157	12.0681
(.((..((((......))))..)	chr19:42364762-42365014(+)$1	1	4	27	10.2107
(((.(..(((.....))).).))	chr19:932388-932653(+)$1	1	211	234	8.4884
((((((((.(......)))))))	chr6:41903504-41903757(-)$1	1	172	195	10.7419
...(((((((......)))))))	chr19:42752565-42752802(-)$1	1	108	131	12.9299
((..((.(((......))).)).	chr1:110950155-110950401(-)$1	1	76	99	11.6133
(((((((((((...)))))))))	chr1:44441881-44442140(+)$1	1	109	132	9.0098
(.((((((((......)))).))	chr1:156104547-156104807(+)$1	1	193	216	9.6441
(.((((((((......)))))))	chr11:67817938-67818180(+)$1	1	9	32	9.7240
(((....(((......)))....	chr19:6739617-6739884(+)$1	1	159	182	11.4922
((((((((((......)))))).	chr19:11242017-11242252(+)$1	1	159	182	9.9449
((..((.(((......))).)).	chr1:110950106-110950355(-)$1	1	30	53	11.6133
.((((.(((.(......).))).	chr7:22852596-22852884(-)$1	1	129	152	10.2749
.(((((((((.....))))))))	chr2:86669117-86669426(+)$1	1	17	40	8.5644
((.(((((((......)))))))	chr16:18812664-18812950(-)$1	1	23	46	11.1178
.((((((((.(......))))))	chr19:1103987-1104239(+)$1	1	178	201	10.1379
(((.((.(((......))))).)	chr16:11349093-11349350(-)$1	1	17	40	11.5018
.(.((((.((......))..)))	chr1:197115423-197115672(-)$1	1	100	123	9.6854
((...(((((......)))))..	chr17:34173984-34174286(+)$1	1	253	276	10.4907
..((((((((......)))))))	chr14:68117819-68118154(-)$1	1	54	77	9.7974
((((((.(((......))).)).	chr1:44441378-44441621(+)$1	1	37	60	10.8498
(((...((((......))))...	chr20:30156917-30157233(+)$1	1	4	27	11.3396
..((((((((......)))))))	chr11:8707214-8707481(+)$1	1	72	95	9.7974
((((((.(((......))).)))	chr1:186282928-186283251(-)$1	1	19	42	13.1120
.(((((((((......))...))	chr2:217363900-217364137(+)$1	1	199	222	11.4051
))))((((((......)).))))	chr11:67379801-67380062(+)$1	1	44	67	9.9635

#PSSM
d : 0.12	e : 0.11	c : 0.11	: : 0.11	g : 0.06	b : 0.06	f : 0.06	[ : 0.04	! : 0.04	$ : 0.03	" : 0.03	# : 0.03	= : 0.03	B : 0.01	F : 0.01	2 : 0.01	h : 0.01	a : 0.01	E : 0.01	G : 0.01	
e : 0.11	g : 0.09	d : 0.09	: : 0.09	! : 0.08	i : 0.08	c : 0.08	b : 0.06	f : 0.06	[ : 0.04	$ : 0.03	h : 0.03	= : 0.03	" : 0.01	F : 0.01	# : 0.01	G : 0.01	a : 0.01	
g : 0.12	h : 0.11	e : 0.09	b : 0.09	! : 0.08	i : 0.08	c : 0.08	: : 0.06	f : 0.06	d : 0.04	" : 0.03	[ : 0.03	= : 0.03	F : 0.01	$ : 0.01	# : 0.01	
g : 0.27	h : 0.11	i : 0.08	" : 0.08	d : 0.06	[ : 0.06	e : 0.04	f : 0.04	b : 0.04	! : 0.04	# : 0.03	c : 0.03	= : 0.03	a : 0.01	F : 0.01	
g : 0.29	h : 0.11	" : 0.09	i : 0.08	f : 0.08	b : 0.08	[ : 0.04	! : 0.04	d : 0.04	c : 0.03	# : 0.03	e : 0.01	a : 0.01	= : 0.01	
g : 0.27	h : 0.11	" : 0.09	b : 0.09	e : 0.08	i : 0.08	f : 0.06	! : 0.04	[ : 0.03	c : 0.03	# : 0.03	d : 0.03	= : 0.01	
g : 0.24	d : 0.14	h : 0.11	[ : 0.11	i : 0.08	e : 0.06	f : 0.06	" : 0.04	c : 0.03	# : 0.03	! : 0.03	b : 0.01	= : 0.01	
c : 0.22	g : 0.22	d : 0.12	h : 0.11	i : 0.08	e : 0.06	[ : 0.06	f : 0.04	" : 0.01	! : 0.01	= : 0.01	
c : 0.24	g : 0.19	b : 0.12	d : 0.11	h : 0.09	i : 0.08	e : 0.06	f : 0.04	[ : 0.01	= : 0.01	
c : 0.22	g : 0.16	b : 0.12	d : 0.11	i : 0.08	h : 0.08	e : 0.06	[ : 0.04	f : 0.04	a : 0.03	= : 0.01	
o : 0.79	n : 0.08	a : 0.06	l : 0.01	g : 0.01	c : 0.01	= : 0.01	
o : 0.83	n : 0.11	l : 0.03	m : 0.01	
o : 0.83	n : 0.11	l : 0.03	m : 0.01	
o : 0.83	n : 0.11	m : 0.01	i : 0.01	l : 0.01	
o : 0.83	n : 0.11	m : 0.01	i : 0.01	= : 0.01	
o : 0.83	g : 0.04	i : 0.03	n : 0.03	a : 0.01	c : 0.01	= : 0.01	
c : 0.22	g : 0.16	b : 0.12	d : 0.11	h : 0.08	e : 0.06	i : 0.06	f : 0.04	a : 0.04	o : 0.04	= : 0.01	
c : 0.22	g : 0.17	b : 0.12	d : 0.11	h : 0.09	e : 0.06	i : 0.06	f : 0.04	] : 0.03	a : 0.03	= : 0.01	
c : 0.22	g : 0.20	d : 0.11	h : 0.11	i : 0.08	e : 0.06	] : 0.06	f : 0.04	2 : 0.04	= : 0.01	3 : 0.01	
g : 0.22	d : 0.12	] : 0.11	h : 0.11	i : 0.08	e : 0.06	f : 0.06	2 : 0.04	4 : 0.03	c : 0.03	3 : 0.03	> : 0.01	a : 0.01	= : 0.01	b : 0.01	
g : 0.25	h : 0.11	e : 0.08	i : 0.08	b : 0.08	f : 0.08	] : 0.06	c : 0.04	2 : 0.04	3 : 0.04	4 : 0.03	d : 0.03	> : 0.01	= : 0.01	
g : 0.29	h : 0.11	i : 0.08	b : 0.08	f : 0.08	2 : 0.08	c : 0.06	3 : 0.04	] : 0.03	4 : 0.03	e : 0.03	d : 0.03	> : 0.01	= : 0.01	
g : 0.24	h : 0.11	2 : 0.09	i : 0.08	4 : 0.08	e : 0.06	c : 0.06	] : 0.04	b : 0.04	> : 0.03	f : 0.03	3 : 0.03	d : 0.03	a : 0.01	= : 0.01	

#score	658.166271261434
#seq	62
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_CDS_m1_run2.txt

#BEAR
gggg$$$$$dddd[a[cccooooooccc]a]ddddggggg	chr8:25315615-25315945(-)$1	330	13	53	12.7606
"bb[a!!a[dddd[bb[cccoooooocccbbdddd]a22a	chr5:137688342-137688617(+)$1	275	104	144	12.8828
:gggggggccc[ccc[cccccclllccc22ccc]cccccc	chr2:54197719-54198016(-)$1	297	124	164	12.7667
####dddd!!bb!!ffffffooooooffffffbb22dddd	chr19:10488974-10489214(-)$1	240	51	91	11.4228
ffff####ccc!!ccc[bb[ammmma]bb]ccc4444ccc	chr4:123747839-123748096(+)$1	257	28	68	13.4616
bb[hhhhhhhh!!ccc[ddddooooooddddccc4444hh	chr6:33179039-33179289(+)$1	250	29	69	13.0354
e[ccc[a[eeeee[ccc[cccnnnnnccc]ccc22eeeee	chr3:122785850-122786164(+)$1	314	180	220	15.3985
333ccceeeee!!a[eeeeeooooooeeeee]a22eeeee	chrX:20284615-20284875(-)$1	260	171	211	12.3523
iiiiiii[a[a"""ccc[cccmmmmccc]ccc333a]aii	chr19:47987245-47987559(-)$1	314	88	128	14.8530
d[bb$$$$$ccc!!dddda[ammmma]a]dddd22ccc33	chr9:139325463-139325765(-)$1	302	118	158	11.4349
e:bb[a[dddd[ccc!!ddddnnnnnddddcccdddd]a]	chr7:148823200-148823467(-)$1	267	158	198	12.5091
ffffff[ccc[eeeee[ddddnnnnnddddeeeee22ccc	chr19:3976135-3976373(-)$1	238	176	216	11.9157
dddd[ccc[bb[dddd!!cccooooooccc]ddddbb]cc	chr5:180651359-180651628(+)$1	269	104	144	12.8741
cc"""ccc[a[dddd!!ddddoooooodddddddd]accc	chr9:80645344-80645581(-)$1	237	132	172	13.4675
ccc####ggggggg[fffffflllffffff]gggggggcc	chr15:41099804-41100109(+)$1	305	164	204	11.6255
h"""ccc!!gggggggbb[bbnnnnnbb22bb]ggggggg	chr17:46131908-46132227(+)$1	319	210	250	12.5837
eeee"""ccc[a[ccc[cccoooooocccccc]a]ccc]e	chr1:1179752-1180032(-)$1	280	96	136	15.8808
dd$$$$$dddd[a"""a[cccooooooccc]a333adddd	chr6:31626692-31626983(-)$1	291	220	260	15.4346
gggg$$$$$ccc!!ccc!!bbnnnnnbb22ccc22ccc55	chr17:34171524-34171888(+)$1	364	214	254	12.7624
b[ccc!!dddd!!gggggggooooooggggggg333dddd	chr17:37618165-37618454(+)$1	289	181	221	15.2106
==========iiiiiiiiiddddllldddd]iiiiiiiii	chr19:42401289-42401573(+)$1	284	108	148	13.5323
bb[ccc[eeeee!!ccc[cccmmmmcccccc]eeeee]cc	chr10:49659520-49659796(-)$1	276	231	271	12.2611
eeeee!!eeeee[a"""bb[annnnna]bb333a]eeeee	chr8:145693804-145694073(+)$1	269	12	52	13.3720
eccc[eeeee####gggggggnnnnngggggggeeeee]c	chr11:126146105-126146396(+)$1	291	146	186	13.4396
eee$$$$$==========[bbnnnnnbb]==========2	chr2:242706966-242707229(+)$1	263	45	85	14.2795
bb[ccc[dddd[a[a[bb[cccmmmmccc]bba]adddd3	chr19:44284872-44285145(-)$1	273	78	118	11.8317
ggg[ggggggg[a[bb[cccooooooccc]bb]a22gggg	chr19:18547556-18547860(-)$1	304	125	165	15.3293
fffff"""eeeee####ddddoooooodddd4444eeeee	chr20:35236167-35236440(+)$1	273	33	73	13.9145
eeeeccc[abb!!gggggggooooooggggggg333bb]a	chr19:47778066-47778333(+)$1	267	133	173	14.1474
f::ccc[==========[cccnnnnnccc]==========	chr1:153604193-153604522(-)$1	329	52	92	14.7205
3ccc]ddddiiiiiiiiicccnnnnnccc22iiiiiiiii	chr12:19592502-19592787(+)$1	285	196	236	14.2092
d[ggggggg!!hhhhhhhh[aooooooa]hhhhhhhhggg	chr19:3201329-3201629(+)$1	300	139	179	12.0609
iiiiiiiii[bb[bb!!ddddnnnnndddd]bb]bb22ii	chr4:110745070-110745290(+)$1	220	7	47	13.2192
gggg:eeeee!!ccc"""cccnnnnnccc333ccc]eeee	chr19:3573197-3573604(-)$1	407	297	337	14.1672
ccc!!a!!cccbb[ccc[a[bbmmmmbb]a]ccc]bb]cc	chr1:202129627-202129908(-)$1	281	48	88	11.7334
c####cccbb[a[gggggggooooooggggggg22a]bb]	chr7:104753046-104753347(-)$1	301	33	73	14.0702
f[ccc[a[ccc[bb"""ddddnnnnndddd]bbccc]a]c	chr19:55628755-55629012(-)$1	257	86	126	14.0313
[==========[a[bb!!ddddllldddd22bb]a]====	chr1:226032892-226033174(-)$1	282	57	97	13.7747
iiii!!cccccc!!ccc[cccnnnnnccc]cccccc]ccc	chr9:80646049-80646344(-)$1	295	36	76	16.3835
=======dddd[bb[ccc[bbnnnnnbb]ccc22bb]ddd	chr7:98543445-98543772(+)$1	327	204	244	12.9257
bb[hhhhhhhh!!ccc[ddddooooooddddccc4444hh	chr6:33178891-33179177(+)$1	286	177	217	13.0354
fffeeeee!!bb!!ccc[cccnnnnnccc]ccc]bb]eee	chr1:11082274-11082617(+)$1	343	164	204	14.3094
fff!!ggggggg!!gggggggnnnnnggggggg22ggggg	chr19:46915251-46915538(-)$1	287	208	248	15.5195
eeeeeeeeee####ccc[cccoooooocccccc333eeee	chr11:6632970-6633335(-)$1	365	202	242	15.0480
iiiiiii[dddd[dddd[cccnnnnncccdddddddd]ii	chr11:85779666-85779924(-)$1	258	18	58	13.6014
fff!!ccc[ddddbb[eeeeennnnneeeeebb22dddd]	chr16:69419254-69419551(-)$1	297	109	149	12.4568
"""ccc[bb[bb!!a!!bb[ccclllccc]bb22a333bb	chr22:37622718-37623051(-)$1	333	110	150	12.0607
effffff"""ccc[ccc[ccclllccc]ccc]ccc4444f	chr16:8734785-8735160(+)$1	375	299	339	12.3869
fff!!ccc!!bb[ccc[cccmmmmcccccc]bb22cccff	chr6:32157536-32157751(-)$1	215	113	153	12.1989
ff####a!!ffffff####cccooooooccc4444fffff	chr19:6739609-6739897(+)$1	288	155	195	13.2059
ffffffbb[ggggggg[ccc[allla]ccc]ggggggg]b	chr12:123997754-123998009(-)$1	255	167	207	12.8471
ddd"""ccc[ccc[bb"""cccmmmmccc22bb]cccccc	chr3:45730807-45731097(+)$1	290	65	105	12.4854
ffffff[dddd[ddddccc[aooooooa22ccc]dddd]d	chr22:50016640-50016925(-)$1	285	121	161	13.0843
"ggggggg[ggggggg"""ddddllldddd333ggggggg	chr12:132401768-132402058(+)$1	290	13	53	12.9002
eee####ccc[eeeee"""bboooooobb22eeeee]ccc	chr6:29600363-29600664(-)$1	301	157	197	12.8710
ffff"""dddd!!a"""eeeeellleeeee22a22dddd3	chr16:88922674-88922975(-)$1	301	78	118	12.6008
eee!!dddd!!gggggggddddoooooodddd22gggggg	chr19:3539128-3539389(-)$1	261	174	214	12.6706
ggg[dddd[dddda[ffffffnnnnnffffff]a]dddd]	chr4:129208546-129208811(-)$1	265	52	92	11.7366
c[==========="""eeeeeooooooeeeee22======	chr7:100285109-100285394(-)$1	285	162	202	14.9002
ddd::::============[annnnna]============	chr19:56599439-56599736(-)$1	297	30	70	11.3819
bbiiiiiiiii[bb"""cccooooooccc333bb]iiiii	chr11:60658147-60658361(-)$1	214	40	80	15.2330

#otherMatches

#Seq PSSM
UGGGUGUGGGACAGAGUGCGUGCGUGUGGUGUGUCCCCAA	chr8:25315615-25315945(-)$1	330	13	53	12.7606
ggcggcgggcgggagcgcgggucaggccggccccggcgau	chr5:137688342-137688617(+)$1	275	104	144	12.8828
AGAgcccccggagccgggcgggcgucccgagccgggcccg	chr2:54197719-54198016(-)$1	297	124	164	12.7667
GAAGAGCUAACAGGGGUCUCUGGGCUGAGACUUGGGAGCU	chr19:10488974-10489214(-)$1	240	51	91	11.4228
CCAGAAAACCCGAGCGAGUAGGGGGCGGCGCGCAGGAGGG	chr4:123747839-123748096(+)$1	257	28	68	13.4616
GCCCUGCUCCCAAGCGACCCCGUGGAGGGGGCGCAGGGGG	chr6:33179039-33179289(+)$1	250	29	69	13.0354
CGUGGCUGCUGCUGGCAAUCUGGGUGAGACUGUGGGGCAG	chr3:122785850-122786164(+)$1	314	180	220	15.3985
AGAGCCCGUCCGACAGCGCUGAGGUGAGUGCAGCAGGGCG	chrX:20284615-20284875(-)$1	260	171	211	12.3523
UUGGGUAGUGCGGGUUGGGGCGGGGGCUGCGGAGAGGGUG	chr19:47987245-47987559(-)$1	314	88	128	14.8530
ugaggagaggugagggccuggggugcggcggCUGGCACAA	chr9:139325463-139325765(-)$1	302	118	158	11.4349
CGCCAUGGCCGAGCCGGCUUCGGUAAGAAGGGCCGGUGGA	chr7:148823200-148823467(-)$1	267	158	198	12.5091
GCCCGCAGUGGCUUUUGCCCCAGAAAGGGGAAAGGAACAC	chr19:3976135-3976373(-)$1	238	176	216	11.9157
agugcuggaggagguugaggaagaggaUCUAGACCCCGUC	chr5:180651359-180651628(+)$1	269	104	144	12.8741
GAUUCCCGGAGCACUCAUGGUGAGGAAGCCAAGUGGUUGG	chr9:80645344-80645581(-)$1	237	132	172	13.4675
GGCGUGAUCUCAGCUCUGCAGACCCUGCGGUGCUGGGAGC	chr15:41099804-41100109(+)$1	305	164	204	11.6255
CUGCGGUGAGCUCAGGGUGGGGGCAGCUGGGCGCCUGAGU	chr17:46131908-46132227(+)$1	319	210	250	12.5837
GGGUCCCAGCUCUCUGCAGGGUGCAGCCUCAGUGCGCUAG	chr1:1179752-1180032(-)$1	280	96	136	15.8808
AUAGGGACCUCAGGGAUGGGGAAGAAACCCGAGUACGAGG	chr6:31626692-31626983(-)$1	291	220	260	15.4346
auggaggagaucgagguggcuauggaggagaccgaggugg	chr17:34171524-34171888(+)$1	364	214	254	12.7624
GGGGCAAGAAGGACGGGAGUGGAGGAGCUUCUGGAACUUU	chr17:37618165-37618454(+)$1	289	181	221	15.2106
GGGUGCGGGGAGGUGGGUCAGGUUCCAUCUGGGCCCACCU	chr19:42401289-42401573(+)$1	284	108	148	13.5323
ggugacguggggcagccgagagaguucuggcaucucaggu	chr10:49659520-49659796(-)$1	276	231	271	12.2611
CUCAGGGGUGAGGCGGGCUGGGGUUUUGGGAGGGGCUUAU	chr8:145693804-145694073(+)$1	269	12	52	13.3720
CUGUUUCUGCAGUUCGUAACCGCACUGGUUGUGGCAGGUA	chr11:126146105-126146396(+)$1	291	146	186	13.4396
GCCGGGGGUCUCGGGGUUGCUGGGGAGGGGAUCUUGGGAG	chr2:242706966-242707229(+)$1	263	45	85	14.2795
CGAGGUGGGGGACCCUGGGCAGGAAGCUGGCUGAGCCCCA	chr19:44284872-44285145(-)$1	273	78	118	11.8317
UGGAGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGU	chr19:18547556-18547860(-)$1	304	125	165	15.3293
AGGGUUCUUGGGAAUAGCAGGGUAAGUCUUGGGUAUCUUA	chr20:35236167-35236440(+)$1	273	33	73	13.9145
CGGCGGCGCCGAGAGCCCCGGAGGCGCGGGGCUGAGCGAG	chr19:47778066-47778333(+)$1	267	133	173	14.1474
UGGACCGCUACUCUUGCGCCCUUGGUGggggugggggugg	chr1:153604193-153604522(-)$1	329	52	92	14.7205
CGGCAGCCCGGGUUCGGCGGCGCGGGGCCGGGCUGAGCCC	chr12:19592502-19592787(+)$1	285	196	236	14.2092
GUGCGGGAGCCGGGCGGGGGUGACUGUGGCCUUGCCUCUC	chr19:3201329-3201629(+)$1	300	139	179	12.0609
UUAUUUAAAUACUUUGCGUUAUUAUUUAAUAAAUGUUUUU	chr4:110745070-110745290(+)$1	220	7	47	13.2192
GGCCGCUCCGGGCCGGACCUGGAACACGGACGCGGGCGGA	chr19:3573197-3573604(-)$1	407	297	337	14.1672
GCAGCCGACCCCUGGUGGCAGCGGCAGCAGGCACAGGAGG	chr1:202129627-202129908(-)$1	281	48	88	11.7334
UGUAGACCUUGGAGUCCUGUGGAUGGAUGGGGUGGUGGAU	chr7:104753046-104753347(-)$1	301	33	73	14.0702
CGGGCGGGCGGUGCGAUGUCCGGAGAGGAUGGCCcggcgg	chr19:55628755-55629012(-)$1	257	86	126	14.0313
GUAUCUUCCCCAAGAAAAGCCUGGAGGGCACUUGUGGGGG	chr1:226032892-226033174(-)$1	282	57	97	13.7747
gcccccgcggcgguucccggagcucgucccggacgcgcgc	chr9:80646049-80646344(-)$1	295	36	76	16.3835
GUUCUGUACUGGACAGAGUGCGUUGUGCCCUUGAGUGCAG	chr7:98543445-98543772(+)$1	327	204	244	12.9257
GCCCUGCUCCCAAGCGACCCCGUGGAGGGGGCGCAGGGGG	chr6:33178891-33179177(+)$1	286	177	217	13.0354
GCCGCCCAGGCAGCACUACAGAGCAGUUGGGGUAUGAUGG	chr1:11082274-11082617(+)$1	343	164	204	14.3094
GGAUCGCUUGGGAAACGCGGGAGAUGUUUGUGUGCCCCAG	chr19:46915251-46915538(-)$1	287	208	248	15.5195
GGGUGAGGGCAGAGGGUAUAGACAGACCUAGCUGGGGCCC	chr11:6632970-6633335(-)$1	365	202	242	15.0480
GUGGGGGGUGGGGACCCUCCGGCUCUUGGGGGUCCCAGUC	chr11:85779666-85779924(-)$1	258	18	58	13.6014
GGACCGGGAGUCGGGACUGGGGGUCGCCCAGCCAACGAUG	chr16:69419254-69419551(-)$1	297	109	149	12.4568
GUAUGGCGUGGAAGGGGUUGUAUGGCAUAGGAGACAUGUU	chr22:37622718-37623051(-)$1	333	110	150	12.0607
CCUUUGUAAUACCUCAGUGCCCCUGGCUCUGUGGUUUUGA	chr16:8734785-8735160(+)$1	375	299	339	12.3869
GGAUUGGUGAGUGGGGAGCCUGGGGGCCCUGGCGAGCCUC	chr6:32157536-32157751(-)$1	215	113	153	12.1989
gGAGCAGCAUGGAUUGGGGCACUGAGCUGUGGGUAAGUCC	chr19:6739609-6739897(+)$1	288	155	195	13.2059
GGGGUCGGGAGGAGUUUGUGGCUUUGGCACUGACUUCUGU	chr12:123997754-123998009(-)$1	255	167	207	12.8471
GCCAGGGUGACCGGUAGAGUUGUAGCCGAGGUggcggcgc	chr3:45730807-45731097(+)$1	290	65	105	12.4854
guuucugucucucccacugucucCCUUGCUCAGCUGGGUG	chr22:50016640-50016925(-)$1	285	121	161	13.0843
gucggguucggcucggaggcugugggacgggggucgggUU	chr12:132401768-132402058(+)$1	290	13	53	12.9002
GCGGGGAUGGAAUCGGGGAGCGCUGAGGCGGCCGAUGCCG	chr6:29600363-29600664(-)$1	301	157	197	12.8710
CACUGUGCUGCAUGACCGGGACAGCGUCCUCCCUGGCAGG	chr16:88922674-88922975(-)$1	301	78	118	12.6008
GGAUACAGGGCCGUGCAGCCUCUUGCCUGAGGGUUUGCAU	chr19:3539128-3539389(-)$1	261	174	214	12.6706
CUGGUGCUGCUGGGGGCCUACCGGCUGUGGGUGCGCUggg	chr4:129208546-129208811(-)$1	265	52	92	11.7366
UCUCCCUGUCAGUGAACAGCGUGGCUGUGCUGAGGCUGAU	chr7:100285109-100285394(-)$1	285	162	202	14.9002
CCGUACGUGUGUCUGGAGUGCGGGAAGGGCUUCGGGCACG	chr19:56599439-56599736(-)$1	297	30	70	11.3819
UUGCAGUUCCUGUGAGACAGGAGAGGCUGAGCCAAGGGAA	chr11:60658147-60658361(-)$1	214	40	80	15.2330

#DB
((((.....((((.(.(((......))).).)))))))))	chr8:25315615-25315945(-)$1	1	13	53	12.7606
.((.(..(.((((.((.(((......))))))))).)..)	chr5:137688342-137688617(+)$1	1	104	144	12.8828
.((((((((((.(((.((((((...)))..))).))))))	chr2:54197719-54198016(-)$1	1	124	164	12.7667
....((((..((..((((((......))))))))..))))	chr19:10488974-10489214(-)$1	1	51	91	11.4228
((((....(((..(((.((.(....).)).)))....)))	chr4:123747839-123748096(+)$1	1	28	68	13.4616
((.((((((((..(((.((((......)))))))....))	chr6:33179039-33179289(+)$1	1	29	69	13.0354
(.(((.(.(((((.(((.(((.....))).)))..)))))	chr3:122785850-122786164(+)$1	1	180	220	15.3985
...)))(((((..(.(((((......))))).)..)))))	chrX:20284615-20284875(-)$1	1	171	211	12.3523
(((((((.(.(...(((.(((....))).)))...).)))	chr19:47987245-47987559(-)$1	1	88	128	14.8530
(.((.....(((..(((((.(....).).))))..)))..	chr9:139325463-139325765(-)$1	1	118	158	11.4349
).((.(.((((.(((..((((.....))))))))))).).	chr7:148823200-148823467(-)$1	1	158	198	12.5091
((((((.(((.(((((.((((.....)))))))))..)))	chr19:3976135-3976373(-)$1	1	176	216	11.9157
((((.(((.((.((((..(((......))).)))))).))	chr5:180651359-180651628(+)$1	1	104	144	12.8741
((...(((.(.((((..((((......)))))))).))))	chr9:80645344-80645581(-)$1	1	132	172	13.4675
(((....(((((((.((((((...)))))).)))))))))	chr15:41099804-41100109(+)$1	1	164	204	11.6255
(...(((..(((((((((.((.....))..)).)))))))	chr17:46131908-46132227(+)$1	1	210	250	12.5837
((((...(((.(.(((.(((......)))))).).))).)	chr1:1179752-1180032(-)$1	1	96	136	15.8808
((.....((((.(...(.(((......))).)...)))))	chr6:31626692-31626983(-)$1	1	220	260	15.4346
((((.....(((..(((..((.....))..)))..)))..	chr17:34171524-34171888(+)$1	1	214	254	12.7624
(.(((..((((..(((((((......)))))))...))))	chr17:37618165-37618454(+)$1	1	181	221	15.2106
(((((((((((((((((((((((...)))).)))))))))	chr19:42401289-42401573(+)$1	1	108	148	13.5323
((.(((.(((((..(((.(((....)))))).))))).))	chr10:49659520-49659796(-)$1	1	231	271	12.2611
(((((..(((((.(...((.(.....).))...).)))))	chr8:145693804-145694073(+)$1	1	12	52	13.3720
((((.(((((....(((((((.....)))))))))))).)	chr11:126146105-126146396(+)$1	1	146	186	13.4396
(((.....((((((((((.((.....)).)))))))))).	chr2:242706966-242707229(+)$1	1	45	85	14.2795
((.(((.((((.(.(.((.(((....))).))).))))).	chr19:44284872-44285145(-)$1	1	78	118	11.8317
(((.(((((((.(.((.(((......))).)).)..))))	chr19:18547556-18547860(-)$1	1	125	165	15.3293
(((((...(((((....((((......))))....)))))	chr20:35236167-35236440(+)$1	1	33	73	13.9145
))))(((.(((..(((((((......)))))))...)).)	chr19:47778066-47778333(+)$1	1	133	173	14.1474
)..(((.((((((((((.(((.....))).))))))))))	chr1:153604193-153604522(-)$1	1	52	92	14.7205
.))).))))((((((((((((.....)))..)))))))))	chr12:19592502-19592787(+)$1	1	196	236	14.2092
(.(((((((..((((((((.(......).)))))))))))	chr19:3201329-3201629(+)$1	1	139	179	12.0609
(((((((((.((.((..((((.....)))).)).))..))	chr4:110745070-110745290(+)$1	1	7	47	13.2192
)))).(((((..(((...(((.....)))...))).))))	chr19:3573197-3573604(-)$1	1	297	337	14.1672
(((..(..(((((.(((.(.((....)).).))).)).))	chr1:202129627-202129908(-)$1	1	48	88	11.7334
(....(((((.(.(((((((......)))))))..).)).	chr7:104753046-104753347(-)$1	1	33	73	14.0702
(.(((.(.(((.((...((((.....)))).))))).).)	chr19:55628755-55629012(-)$1	1	86	126	14.0313
.((((((((((.(.((..((((...))))..)).).))))	chr1:226032892-226033174(-)$1	1	57	97	13.7747
((((..((((((..(((.(((.....))).)))))).)))	chr9:80646049-80646344(-)$1	1	36	76	16.3835
)))))))((((.((.(((.((.....)).)))..)).)))	chr7:98543445-98543772(+)$1	1	204	244	12.9257
((.((((((((..(((.((((......)))))))....))	chr6:33178891-33179177(+)$1	1	177	217	13.0354
)))(((((..((..(((.(((.....))).))).)).)))	chr1:11082274-11082617(+)$1	1	164	204	14.3094
(((..(((((((..(((((((.....)))))))..)))))	chr19:46915251-46915538(-)$1	1	208	248	15.5195
((((((((((....(((.(((......))))))...))))	chr11:6632970-6633335(-)$1	1	202	242	15.0480
(((((((.((((.((((.(((.....))))))))))).))	chr11:85779666-85779924(-)$1	1	18	58	13.6014
(((..(((.((((((.(((((.....)))))))..)))).	chr16:69419254-69419551(-)$1	1	109	149	12.4568
...(((.((.((..(..((.(((...))).))..)...))	chr22:37622718-37623051(-)$1	1	110	150	12.0607
)((((((...(((.(((.(((...))).))).)))....)	chr16:8734785-8735160(+)$1	1	299	339	12.3869
(((..(((..((.(((.(((....)))))).))..)))))	chr6:32157536-32157751(-)$1	1	113	153	12.1989
((....(..((((((....(((......)))....)))))	chr19:6739609-6739897(+)$1	1	155	195	13.2059
((((((((.(((((((.(((.(...).))).))))))).)	chr12:123997754-123998009(-)$1	1	167	207	12.8471
(((...(((.(((.((...(((....)))..)).))))))	chr3:45730807-45731097(+)$1	1	65	105	12.4854
((((((.((((.(((((((.(......)..))).)))).)	chr22:50016640-50016925(-)$1	1	121	161	13.0843
.(((((((.(((((((...((((...))))...)))))))	chr12:132401768-132402058(+)$1	1	13	53	12.9002
(((....(((.(((((...((......))..))))).)))	chr6:29600363-29600664(-)$1	1	157	197	12.8710
((((...((((..(...(((((...)))))..)..)))).	chr16:88922674-88922975(-)$1	1	78	118	12.6008
(((..((((..(((((((((((......))))..))))))	chr19:3539128-3539389(-)$1	1	174	214	12.6706
(((.((((.(((((.((((((.....)))))).).)))).	chr4:129208546-129208811(-)$1	1	52	92	11.7366
(.(((((((((((...(((((......)))))..))))))	chr7:100285109-100285394(-)$1	1	162	202	14.9002
)))....((((((((((((.(.....).))))))))))))	chr19:56599439-56599736(-)$1	1	30	70	11.3819
(((((((((((.((...(((......)))...)).)))))	chr11:60658147-60658361(-)$1	1	40	80	15.2330

#PSSM
f : 0.21	e : 0.18	b : 0.09	d : 0.09	g : 0.08	c : 0.08	i : 0.06	" : 0.04	3 : 0.03	= : 0.03	: : 0.01	# : 0.01	h : 0.01	[ : 0.01	
f : 0.19	g : 0.11	e : 0.11	b : 0.09	[ : 0.09	c : 0.08	i : 0.06	d : 0.06	= : 0.04	# : 0.03	: : 0.03	" : 0.03	3 : 0.01	
f : 0.18	g : 0.13	c : 0.11	e : 0.11	i : 0.08	[ : 0.06	= : 0.06	b : 0.04	# : 0.04	d : 0.04	" : 0.04	3 : 0.01	$ : 0.01	: : 0.01	
c : 0.16	f : 0.11	g : 0.09	# : 0.08	i : 0.08	e : 0.08	! : 0.08	= : 0.06	[ : 0.04	" : 0.04	h : 0.03	b : 0.03	$ : 0.03	d : 0.01	: : 0.01	
c : 0.16	! : 0.09	$ : 0.08	# : 0.08	f : 0.08	g : 0.06	i : 0.06	" : 0.06	= : 0.06	[ : 0.04	e : 0.04	d : 0.03	h : 0.03	: : 0.03	a : 0.01	] : 0.01	
c : 0.19	$ : 0.08	g : 0.08	! : 0.06	d : 0.06	# : 0.06	i : 0.06	f : 0.06	" : 0.06	= : 0.06	e : 0.06	h : 0.03	[ : 0.03	a : 0.03	: : 0.01	
c : 0.14	[ : 0.11	$ : 0.08	g : 0.08	e : 0.08	! : 0.06	d : 0.06	i : 0.06	= : 0.06	# : 0.04	a : 0.04	" : 0.04	h : 0.03	f : 0.01	b : 0.01	: : 0.01	
d : 0.18	c : 0.16	e : 0.11	g : 0.09	[ : 0.08	= : 0.08	$ : 0.06	! : 0.04	h : 0.03	" : 0.03	i : 0.03	b : 0.03	a : 0.01	# : 0.01	
d : 0.16	c : 0.14	e : 0.13	[ : 0.11	= : 0.09	! : 0.08	g : 0.06	$ : 0.04	h : 0.03	a : 0.03	i : 0.03	b : 0.03	" : 0.01	
d : 0.19	c : 0.16	e : 0.13	g : 0.09	= : 0.09	! : 0.08	[ : 0.06	b : 0.04	h : 0.03	i : 0.03	a : 0.01	" : 0.01	f : 0.01	
d : 0.19	c : 0.14	b : 0.11	g : 0.09	e : 0.08	[ : 0.08	= : 0.08	i : 0.04	! : 0.04	h : 0.03	# : 0.03	a : 0.01	f : 0.01	
[ : 0.18	! : 0.13	d : 0.09	b : 0.09	e : 0.09	g : 0.09	c : 0.08	= : 0.06	a : 0.03	i : 0.03	# : 0.03	" : 0.01	h : 0.01	f : 0.01	
! : 0.24	d : 0.11	[ : 0.09	c : 0.08	g : 0.08	e : 0.06	a : 0.06	= : 0.06	b : 0.06	i : 0.03	# : 0.03	" : 0.01	h : 0.01	f : 0.01	
[ : 0.14	c : 0.13	! : 0.13	g : 0.13	b : 0.08	a : 0.06	d : 0.06	" : 0.04	# : 0.04	= : 0.04	e : 0.03	i : 0.03	h : 0.01	f : 0.01	
c : 0.27	g : 0.14	b : 0.09	" : 0.09	d : 0.08	[ : 0.06	a : 0.04	= : 0.04	f : 0.03	e : 0.03	i : 0.03	# : 0.01	h : 0.01	
c : 0.24	g : 0.14	" : 0.11	[ : 0.06	b : 0.06	d : 0.06	! : 0.06	f : 0.04	e : 0.04	= : 0.04	i : 0.03	# : 0.03	h : 0.01	
c : 0.21	[ : 0.14	" : 0.13	! : 0.09	g : 0.09	f : 0.04	e : 0.04	= : 0.04	d : 0.03	b : 0.03	i : 0.03	# : 0.03	a : 0.01	h : 0.01	
[ : 0.18	c : 0.16	d : 0.14	g : 0.09	b : 0.08	e : 0.06	" : 0.06	f : 0.04	! : 0.04	i : 0.03	= : 0.03	h : 0.01	# : 0.01	
c : 0.36	d : 0.16	g : 0.08	e : 0.06	[ : 0.06	f : 0.04	b : 0.04	" : 0.04	a : 0.03	! : 0.01	i : 0.01	h : 0.01	# : 0.01	= : 0.01	
c : 0.37	d : 0.19	[ : 0.13	b : 0.08	g : 0.08	e : 0.06	f : 0.04	o : 0.01	
c : 0.29	d : 0.19	o : 0.16	a : 0.09	b : 0.09	e : 0.04	f : 0.03	g : 0.03	m : 0.01	[ : 0.01	
o : 0.34	n : 0.34	c : 0.08	m : 0.08	d : 0.06	l : 0.03	b : 0.01	a : 0.01	e : 0.01	
o : 0.37	n : 0.34	m : 0.13	l : 0.09	d : 0.03	c : 0.01	
o : 0.37	n : 0.34	l : 0.14	m : 0.13	
o : 0.37	n : 0.34	l : 0.11	m : 0.11	c : 0.03	f : 0.01	
o : 0.36	n : 0.34	c : 0.09	a : 0.04	l : 0.04	m : 0.04	f : 0.01	d : 0.01	e : 0.01	
c : 0.32	o : 0.21	d : 0.11	b : 0.08	g : 0.08	f : 0.04	] : 0.04	e : 0.04	a : 0.03	
c : 0.37	d : 0.18	b : 0.11	g : 0.08	e : 0.06	f : 0.04	a : 0.04	] : 0.04	o : 0.03	
c : 0.36	d : 0.19	] : 0.11	g : 0.08	2 : 0.06	e : 0.06	f : 0.04	b : 0.04	= : 0.01	
d : 0.21	c : 0.18	2 : 0.13	] : 0.13	g : 0.08	e : 0.06	f : 0.04	a : 0.03	b : 0.03	= : 0.03	3 : 0.03	h : 0.01	
c : 0.24	] : 0.16	d : 0.11	b : 0.08	g : 0.08	2 : 0.08	e : 0.06	3 : 0.06	= : 0.04	f : 0.03	h : 0.01	
c : 0.24	b : 0.16	d : 0.11	g : 0.11	3 : 0.06	] : 0.04	e : 0.04	= : 0.04	f : 0.03	i : 0.03	4 : 0.03	a : 0.01	h : 0.01	2 : 0.01	
c : 0.22	b : 0.13	g : 0.11	d : 0.09	3 : 0.06	] : 0.06	2 : 0.06	a : 0.04	e : 0.04	= : 0.04	i : 0.03	4 : 0.03	h : 0.01	
2 : 0.21	] : 0.11	c : 0.11	d : 0.09	3 : 0.08	e : 0.06	g : 0.06	a : 0.06	4 : 0.04	= : 0.04	b : 0.03	i : 0.03	h : 0.01	
2 : 0.18	d : 0.11	c : 0.09	4 : 0.08	3 : 0.08	g : 0.08	] : 0.08	e : 0.06	= : 0.06	a : 0.04	b : 0.04	i : 0.03	h : 0.01	
c : 0.13	g : 0.11	e : 0.11	d : 0.11	b : 0.08	] : 0.06	4 : 0.06	3 : 0.06	= : 0.06	2 : 0.04	a : 0.04	i : 0.04	h : 0.01	f : 0.01	
d : 0.16	g : 0.13	e : 0.13	] : 0.11	c : 0.09	= : 0.08	4 : 0.06	b : 0.04	i : 0.04	a : 0.03	2 : 0.03	h : 0.01	3 : 0.01	f : 0.01	
c : 0.18	g : 0.14	d : 0.14	e : 0.13	] : 0.08	= : 0.08	4 : 0.04	i : 0.04	2 : 0.03	a : 0.03	b : 0.03	3 : 0.01	f : 0.01	
c : 0.18	d : 0.13	g : 0.11	e : 0.11	i : 0.09	] : 0.09	= : 0.08	h : 0.03	b : 0.03	f : 0.03	2 : 0.01	3 : 0.01	a : 0.01	5 : 0.01	4 : 0.01	
c : 0.21	e : 0.13	g : 0.11	i : 0.09	d : 0.08	] : 0.06	= : 0.06	3 : 0.04	f : 0.04	a : 0.03	h : 0.03	b : 0.03	5 : 0.01	2 : 0.01	

#score	814.5725952270823
#seq	61
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_transcript_m3_run2.txt

#BEAR
ddd[ddddqqqqqqqqdddddddd	chr6:90503525-90503771(-)$1	246	74	98	15.0596
bb[ccc[aqqqqqqqqa]ccc22b	chr16:19721691-19722009(-)$1	318	262	286	15.0383
!!dddd[aqqqqqqqqadddd22g	chr2:232327812-232328039(-)$1	227	162	186	15.5787
dd[ccc[aqqqqqqqqa]cccddd	chr8:42924653-42924906(+)$1	253	186	210	15.2178
c[ffffffqqqqqqqqffffff]c	chr16:23098941-23099189(-)$1	248	101	125	14.8515
iiiiiiiiqqqqqqqqiiiiiiii	chr11:108012275-108012527(+)$1	252	19	43	15.9566
eeee[cccqqqqqqqqccc]eeee	chrX:76940333-76940576(-)$1	243	98	122	16.0249
ccc!!cccqqqqqqqqccc22ccc	chr5:179044891-179045096(-)$1	205	10	34	16.2685
dd[eeeeeqqqqqqqqeeeeeddd	chr3:120365719-120365930(-)$1	211	75	99	14.7659
iiiiiiiiqqqqqqqqiiiiiiii	chr2:95775564-95775815(-)$1	251	56	80	15.9566
dd!!ddddqqqqqqqqdddd4444	chr6:142732397-142732635(+)$1	238	86	110	16.1791
b[ffffffqqqqqqqqffffff]b	chr22:28693699-28693940(-)$1	241	15	39	14.4388
f"""ddddqqqqqqqqdddd333f	chr2:152330379-152330603(+)$1	224	41	65	16.5281
:gggggggqqqqqqqqgggggggC	chr17:29685898-29686126(+)$1	228	22	46	13.7686
d####cccqqqqqqqqccc4444d	chr14:50249189-50249406(+)$1	217	168	192	16.4029
eeee[cccqqqqqqqqccc333ee	chr5:102465259-102465514(+)$1	255	188	212	16.5075
b!!eeeeeqqqqqqqqeeeee333	chrX:70783202-70783446(+)$1	244	152	176	15.8684
$$ffffffqqqqqqqqffffffgg	chr17:31105394-31105691(-)$1	297	265	289	14.3890
bcccddddqqqqqqqqdddd]ccc	chr9:6460509-6460788(+)$1	279	60	84	15.7086
[gggggggqqqqqqqqggggggge	chr1:52937643-52937875(-)$1	232	165	189	15.8761
ccc!!cccqqqqqqqqccc22ccc	chr7:131073580-131073819(+)$1	239	212	236	16.2685
####ddddqqqqqqqqdddd333c	chr18:18548637-18548909(-)$1	272	211	235	16.7148
!eeeeebbqqqqqqqqbb]eeeee	chr12:64827215-64827483(+)$1	268	165	189	14.8527
ggffffffqqqqqqqqffffff33	chr12:105520017-105520241(+)$1	224	20	44	14.8923
h[ccc[bbqqqqqqqqbb]ccc]h	chr11:118454516-118454774(+)$1	258	124	148	14.7436
#ccc[cccqqqqqqqqccc]cccf	chr2:203991496-203991748(+)$1	252	191	215	16.2533
!cccddddqqqqqqqqdddd]ccc	chr5:86685217-86685425(+)$1	208	154	178	16.0211
c[ddddbbqqqqqqqqbb]dddd]	chr1:171510444-171510682(+)$1	238	127	151	14.5014
[eeeeebbqqqqqqqqbb]eeeee	chrX:53244937-53245247(-)$1	310	144	168	14.8225
iiiiiiiiqqqqqqqqiiiiiiii	chr1:225152092-225152418(+)$1	326	99	123	15.9566
bb!!ddddqqqqqqqqdddd]bb]	chr19:38230623-38231016(-)$1	393	213	237	15.3797
[gggggggqqqqqqqqggggggg2	chr5:79746224-79746481(+)$1	257	38	62	15.7207
eee!!cccqqqqqqqqccc333ee	chr18:252438-252712(-)$1	274	10	34	16.7356
==!!ddddqqqqqqqqdddd6666	chr6:44390370-44390646(+)$1	276	54	78	14.6150
hhh[ddddqqqqqqqqdddd]hhh	chr17:38569014-38569265(-)$1	251	136	160	15.0526
a[ffffffqqqqqqqqffffff]a	chr10:96322350-96322589(+)$1	239	143	167	14.8259
#gggggggqqqqqqqqggggggg3	chr2:99995384-99995682(+)$1	298	154	178	15.9222
#ccc[cccqqqqqqqqcccccc>>	chr2:69590678-69590904(-)$1	226	171	195	15.8684
iiiiiiiiqqqqqqqqiiiiiiii	chr1:178745734-178746009(+)$1	275	29	53	15.9566
[bb!!cccqqqqqqqqccc22bb]	chr11:122928940-122929209(-)$1	269	22	46	15.4094
ffffddddqqqqqqqqddddccco	chr6:56999528-56999770(+)$1	242	179	203	15.0105
:eeeee[aqqqqqqqqa22eeeee	chr11:95512942-95513195(-)$1	253	117	141	14.0283
gggg[cccqqqqqqqqcccggggg	chr12:110777078-110777310(+)$1	232	183	207	16.4092
b[dddd[aqqqqqqqqa22dddd]	chr2:190560796-190561110(+)$1	314	223	247	14.5982
####ddddqqqqqqqqddddffff	chr15:99467044-99467313(+)$1	269	162	186	15.8244
ggccc[bbqqqqqqqqbb]ccc]g	chr20:34451012-34451284(+)$1	272	175	199	14.9799
==ccc[bbqqqqqqqqbb]ccc:f	chr15:58971340-58971582(-)$1	242	170	194	14.0335
ff"""cccqqqqqqqqccc333ff	chr10:112349550-112349813(+)$1	263	153	177	16.4240
eee[ddddqqqqqqqqdddd]eee	chr5:14290897-14291172(+)$1	275	121	145	15.8430
##ffffffqqqqqqqqffffffcc	chr11:113607237-113607621(-)$1	384	201	225	14.7923
f!!eeeeeqqqqqqqqeeeee]ff	chr19:4366822-4367040(-)$1	218	160	184	15.3608
dddeeeeeqqqqqqqqeeeee]dd	chr3:121547354-121547578(-)$1	224	144	168	14.7182
!bb!!cccqqqqqqqqccc22bbc	chr14:23425857-23426137(-)$1	280	115	139	15.4202
eeee[cccqqqqqqqqccc]eeee	chr2:55590984-55591227(-)$1	243	163	187	16.0249
ee"""cccqqqqqqqqccc]eeee	chr11:17980914-17981201(-)$1	287	96	120	16.2352
e"""ddddqqqqqqqqdddd4444	chr7:72884652-72884911(-)$1	259	188	212	16.3915
eeeeeeeeqqqqqqqqeeeee]ee	chr18:43534698-43534992(-)$1	294	164	188	15.1359
eeeeecccqqqqqqqqccc]eeee	chr17:49083386-49083653(-)$1	267	62	86	15.9045
!bb[ddddqqqqqqqqdddd]bb2	chr3:25660046-25660257(-)$1	211	107	131	15.0455
b!!eeeeeqqqqqqqqeeeee22b	chr6:161470462-161470714(+)$1	252	44	68	15.0322
gggg[cccqqqqqqqqccc]gggg	chr17:27802587-27802894(+)$1	307	242	266	16.4783
eeeee!!aqqqqqqqqa22eeeee	chr1:70716189-70716417(+)$1	228	6	30	14.8395
========qqqqqqqq========	chr10:6150547-6150790(+)$1	243	91	115	16.4067
d"""ddddqqqqqqqqdddd333d	chr5:145557007-145557257(-)$1	250	157	181	16.5196
ccc[cccaqqqqqqqqa]ccc]cc	chr4:107156367-107156625(-)$1	258	122	146	16.0430

#otherMatches

#Seq PSSM
UGACGAGACUCUCCUUUCUCUCAG	chr6:90503525-90503771(-)$1	246	74	98	15.0596
GCAGGAGAACCAAGUAUGUCCAGG	chr16:19721691-19722009(-)$1	318	262	286	15.0383
AAAACUACAAAAUGGAGAGUUAAG	chr2:232327812-232328039(-)$1	227	162	186	15.5787
ugcaguggcaugaccucggcucac	chr8:42924653-42924906(+)$1	253	186	210	15.2178
UGGAGAAGAUGAAGUAUUUCUUGA	chr16:23098941-23099189(-)$1	248	101	125	14.8515
GUUUUGAGCGAUUUUACUUAAAAU	chr11:108012275-108012527(+)$1	252	19	43	15.9566
GAGUGAUGAUAUUAGCCGUGACUC	chrX:76940333-76940576(-)$1	243	98	122	16.0249
UGAUUGAUUGUACUUUGUCUUUCA	chr5:179044891-179045096(-)$1	205	10	34	16.2685
AUGCUUGUACAGCCCAAUGAGAUC	chr3:120365719-120365930(-)$1	211	75	99	14.7659
CUUUAGCAGAGACUGGUGCUGGAG	chr2:95775564-95775815(-)$1	251	56	80	15.9566
GAGAUUCAGAUGCAAGUGAGACAG	chr6:142732397-142732635(+)$1	238	86	110	16.1791
UAUUUCUAGAGCGUAUUAGAAAAG	chr22:28693699-28693940(-)$1	241	15	39	14.4388
GUUUCAAUUUGUUGUUGUUGUUGU	chr2:152330379-152330603(+)$1	224	41	65	16.5281
AUUUAAUUUCUGUUACAAUUAAAA	chr17:29685898-29686126(+)$1	228	22	46	13.7686
UCCUAAGACUUAGCACUCUCGAAA	chr14:50249189-50249406(+)$1	217	168	192	16.4029
CAGUAUAGGCUUUUUACUAAUCAC	chr5:102465259-102465514(+)$1	255	188	212	16.5075
AAGAUAAUAAUACACCAUUAUAUG	chrX:70783202-70783446(+)$1	244	152	176	15.8684
CUCUAGGGGUUGAGCAUUUUGGGG	chr17:31105394-31105691(-)$1	297	265	289	14.3890
CAGAUACCCAGAAAGCGGUACUCU	chr9:6460509-6460788(+)$1	279	60	84	15.7086
AUUUUAGGAAAAUUGAUUUAAAAC	chr1:52937643-52937875(-)$1	232	165	189	15.8761
gcccauagaccaaauccugcaggc	chr7:131073580-131073819(+)$1	239	212	236	16.2685
UUUUGAGUUAAUCAUUGCUCUUUA	chr18:18548637-18548909(-)$1	272	211	235	16.7148
AAGGUGGGAACACAUGCCAUAUCU	chr12:64827215-64827483(+)$1	268	165	189	14.8527
AGACAAGUAUGUUGGAAUUUGUGG	chr12:105520017-105520241(+)$1	224	20	44	14.8923
UCUGCAGUAUCUGGAGGCAGCACA	chr11:118454516-118454774(+)$1	258	124	148	14.7436
UUUCUGUCUGCUACUUGAUUGGAA	chr2:203991496-203991748(+)$1	252	191	215	16.2533
AUGAUGUUUCAAAGAUAACACUUA	chr5:86685217-86685425(+)$1	208	154	178	16.0211
CCUUAUGUAAGGGAUGACGAUAAA	chr1:171510444-171510682(+)$1	238	127	151	14.5014
GGAUGUGAAGGUGGAGUCAACAUC	chrX:53244937-53245247(-)$1	310	144	168	14.8225
GAUGAUGUGAUAAGAAAUAUUAUU	chr1:225152092-225152418(+)$1	326	99	123	15.9566
GAAGAACUUUAGAAGUGGUUAUCA	chr19:38230623-38231016(-)$1	393	213	237	15.3797
AUAUUGGUACUUUUCAACCAAUGG	chr5:79746224-79746481(+)$1	257	38	62	15.7207
GGAAUGUGUAACUGACCACUUAUU	chr18:252438-252712(-)$1	274	10	34	16.7356
GAACAACUCCCAAACCAGUUAUUA	chr6:44390370-44390646(+)$1	276	54	78	14.6150
CUAAGUUUAAAAUGCAAAGCCUGG	chr17:38569014-38569265(-)$1	251	136	160	15.0526
CUUAUUCUAGUUUUGAAGAAUAUG	chr10:96322350-96322589(+)$1	239	143	167	14.8259
AUCUGCGUACUUGGGCAUGUGGAC	chr2:99995384-99995682(+)$1	298	154	178	15.9222
CACAUGGAGAACCCAGUCCUGUCA	chr2:69590678-69590904(-)$1	226	171	195	15.8684
GUUUUCUUGAACUUCGAGGAAGAC	chr1:178745734-178746009(+)$1	275	29	53	15.9566
UUGAGCAAGGAAGACAUUGAACGU	chr11:122928940-122929209(-)$1	269	22	46	15.4094
AUAGCCAUGGAGUUAAGUGGAGGU	chr6:56999528-56999770(+)$1	242	179	203	15.0105
AAGUCCAGAAGAAGAGCAGGGACU	chr11:95512942-95513195(-)$1	253	117	141	14.0283
GAACCAAUAAAACAAAAUUGUUUA	chr12:110777078-110777310(+)$1	232	183	207	16.4092
AGAGUUUCUAUUAUAUGUCAACUG	chr2:190560796-190561110(+)$1	314	223	247	14.5982
UAAUGUAUGAAAUAAAAUACGGAU	chr15:99467044-99467313(+)$1	269	162	186	15.8244
CCGAAAAUGACAGAGAGUAUUCUG	chr20:34451012-34451284(+)$1	272	175	199	14.9799
GUGGCACAUUUUAUGUUGAGCCAG	chr15:58971340-58971582(-)$1	242	170	194	14.0335
AGAUCUUGAAAAGAAGCAACAACU	chr10:112349550-112349813(+)$1	263	153	177	16.4240
GCUGCCUCAGGAUUUAGAGGGGGC	chr5:14290897-14291172(+)$1	275	121	145	15.8430
CAGUCUAUGUGCCAAAAUGGAUGC	chr11:113607237-113607621(-)$1	384	201	225	14.7923
GGGGCCUGACCUCUGCCGGGCAUA	chr19:4366822-4367040(-)$1	218	160	184	15.3608
UCAAACAAGAUAUAUAUUGUUAUG	chr3:121547354-121547578(-)$1	224	144	168	14.7182
GGCCGCCCAGACAGAAGGGAAGUA	chr14:23425857-23426137(-)$1	280	115	139	15.4202
UACGUGCUAUUUAUGAAGCUUGUG	chr2:55590984-55591227(-)$1	243	163	187	16.0249
AACUAGAAAAGCAAGAUUCAUUUC	chr11:17980914-17981201(-)$1	287	96	120	16.2352
AACUAGUCAUGCGCAGGACUCCUA	chr7:72884652-72884911(-)$1	259	188	212	16.3915
AGACAAACAAGGCCUGGUUUGUUC	chr18:43534698-43534992(-)$1	294	164	188	15.1359
UUGAACAUAGUGAAGAAUGAUUUG	chr17:49083386-49083653(-)$1	267	62	86	15.9045
CUAUAGGUAAGAUACAACCUUUAA	chr3:25660046-25660257(-)$1	211	107	131	15.0455
AGACUUAAAUCAGAAAUUAAGGAU	chr6:161470462-161470714(+)$1	252	44	68	15.0322
UUGGUUUAUAAUGAAUUAAUUCAG	chr17:27802587-27802894(+)$1	307	242	266	16.4783
CAAAUUGAUUUAUUUUUAUAUUUG	chr1:70716189-70716417(+)$1	228	6	30	14.8395
GGUUUUGCAGGUAUGGGCGGAGCU	chr10:6150547-6150790(+)$1	243	91	115	16.4067
AGUUUGUGAAGUUCUGCACAUUGU	chr5:145557007-145557257(-)$1	250	157	181	16.5196
CAAAUCUGGAAAGAAGCAAGAGUU	chr4:107156367-107156625(-)$1	258	122	146	16.0430

#DB
(((.((((........))))))))	chr6:90503525-90503771(-)$1	1	74	98	15.0596
((.(((.(........).)))..)	chr16:19721691-19722009(-)$1	1	262	286	15.0383
..((((.(........)))))..)	chr2:232327812-232328039(-)$1	1	162	186	15.5787
((.(((.(........).))))))	chr8:42924653-42924906(+)$1	1	186	210	15.2178
(.((((((........)))))).)	chr16:23098941-23099189(-)$1	1	101	125	14.8515
((((((((........))))))))	chr11:108012275-108012527(+)$1	1	19	43	15.9566
((((.(((........))).))))	chrX:76940333-76940576(-)$1	1	98	122	16.0249
(((..(((........)))..)))	chr5:179044891-179045096(-)$1	1	10	34	16.2685
((.(((((........))))))))	chr3:120365719-120365930(-)$1	1	75	99	14.7659
((((((((........))))))))	chr2:95775564-95775815(-)$1	1	56	80	15.9566
((..((((........))))....	chr6:142732397-142732635(+)$1	1	86	110	16.1791
(.((((((........)))))).)	chr22:28693699-28693940(-)$1	1	15	39	14.4388
(...((((........))))...)	chr2:152330379-152330603(+)$1	1	41	65	16.5281
.(((((((........)))))))(	chr17:29685898-29686126(+)$1	1	22	46	13.7686
(....(((........)))....)	chr14:50249189-50249406(+)$1	1	168	192	16.4029
((((.(((........)))...))	chr5:102465259-102465514(+)$1	1	188	212	16.5075
(..(((((........)))))...	chrX:70783202-70783446(+)$1	1	152	176	15.8684
..((((((........))))))))	chr17:31105394-31105691(-)$1	1	265	289	14.3890
((((((((........)))).)))	chr9:6460509-6460788(+)$1	1	60	84	15.7086
.(((((((........))))))))	chr1:52937643-52937875(-)$1	1	165	189	15.8761
(((..(((........)))..)))	chr7:131073580-131073819(+)$1	1	212	236	16.2685
....((((........))))...)	chr18:18548637-18548909(-)$1	1	211	235	16.7148
.(((((((........)).)))))	chr12:64827215-64827483(+)$1	1	165	189	14.8527
((((((((........))))))..	chr12:105520017-105520241(+)$1	1	20	44	14.8923
(.(((.((........)).))).)	chr11:118454516-118454774(+)$1	1	124	148	14.7436
.(((.(((........))).))))	chr2:203991496-203991748(+)$1	1	191	215	16.2533
.(((((((........)))).)))	chr5:86685217-86685425(+)$1	1	154	178	16.0211
(.((((((........)).)))).	chr1:171510444-171510682(+)$1	1	127	151	14.5014
.(((((((........)).)))))	chrX:53244937-53245247(-)$1	1	144	168	14.8225
((((((((........))))))))	chr1:225152092-225152418(+)$1	1	99	123	15.9566
((..((((........)))).)).	chr19:38230623-38231016(-)$1	1	213	237	15.3797
.(((((((........))))))).	chr5:79746224-79746481(+)$1	1	38	62	15.7207
(((..(((........)))...))	chr18:252438-252712(-)$1	1	10	34	16.7356
((..((((........))))....	chr6:44390370-44390646(+)$1	1	54	78	14.6150
(((.((((........)))).)))	chr17:38569014-38569265(-)$1	1	136	160	15.0526
(.((((((........)))))).)	chr10:96322350-96322589(+)$1	1	143	167	14.8259
.(((((((........))))))).	chr2:99995384-99995682(+)$1	1	154	178	15.9222
.(((.(((........))))))..	chr2:69590678-69590904(-)$1	1	171	195	15.8684
((((((((........))))))))	chr1:178745734-178746009(+)$1	1	29	53	15.9566
.((..(((........)))..)).	chr11:122928940-122929209(-)$1	1	22	46	15.4094
))))((((........))))(((.	chr6:56999528-56999770(+)$1	1	179	203	15.0105
.(((((.(........)..)))))	chr11:95512942-95513195(-)$1	1	117	141	14.0283
((((.(((........))))))))	chr12:110777078-110777310(+)$1	1	183	207	16.4092
(.((((.(........)..)))).	chr2:190560796-190561110(+)$1	1	223	247	14.5982
....((((........))))))))	chr15:99467044-99467313(+)$1	1	162	186	15.8244
(((((.((........)).))).)	chr20:34451012-34451284(+)$1	1	175	199	14.9799
))(((.((........)).))).(	chr15:58971340-58971582(-)$1	1	170	194	14.0335
((...(((........)))...))	chr10:112349550-112349813(+)$1	1	153	177	16.4240
(((.((((........)))).)))	chr5:14290897-14291172(+)$1	1	121	145	15.8430
..((((((........))))))))	chr11:113607237-113607621(-)$1	1	201	225	14.7923
(..(((((........))))).))	chr19:4366822-4367040(-)$1	1	160	184	15.3608
((((((((........))))).))	chr3:121547354-121547578(-)$1	1	144	168	14.7182
.((..(((........)))..)))	chr14:23425857-23426137(-)$1	1	115	139	15.4202
((((.(((........))).))))	chr2:55590984-55591227(-)$1	1	163	187	16.0249
((...(((........))).))))	chr11:17980914-17981201(-)$1	1	96	120	16.2352
(...((((........))))....	chr7:72884652-72884911(-)$1	1	188	212	16.3915
((((((((........))))).))	chr18:43534698-43534992(-)$1	1	164	188	15.1359
((((((((........))).))))	chr17:49083386-49083653(-)$1	1	62	86	15.9045
.((.((((........)))).)).	chr3:25660046-25660257(-)$1	1	107	131	15.0455
(..(((((........)))))..)	chr6:161470462-161470714(+)$1	1	44	68	15.0322
((((.(((........))).))))	chr17:27802587-27802894(+)$1	1	242	266	16.4783
(((((..(........)..)))))	chr1:70716189-70716417(+)$1	1	6	30	14.8395
((((((((........))))))))	chr10:6150547-6150790(+)$1	1	91	115	16.4067
(...((((........))))...)	chr5:145557007-145557257(-)$1	1	157	181	16.5196
(((.((((........).))).))	chr4:107156367-107156625(-)$1	1	122	146	16.0430

#PSSM
e : 0.15	d : 0.10	b : 0.10	# : 0.09	! : 0.07	c : 0.07	i : 0.06	f : 0.06	[ : 0.06	g : 0.06	= : 0.04	: : 0.03	h : 0.03	$ : 0.01	a : 0.01	
e : 0.18	g : 0.12	c : 0.10	[ : 0.09	d : 0.07	b : 0.07	! : 0.06	i : 0.06	# : 0.06	" : 0.04	= : 0.04	f : 0.03	$ : 0.01	h : 0.01	
e : 0.16	c : 0.15	f : 0.10	! : 0.09	g : 0.09	d : 0.07	" : 0.07	i : 0.06	[ : 0.04	# : 0.04	b : 0.04	h : 0.01	= : 0.01	
e : 0.21	c : 0.13	! : 0.12	f : 0.10	g : 0.09	[ : 0.07	" : 0.07	i : 0.06	d : 0.04	# : 0.04	= : 0.01	
d : 0.27	e : 0.16	[ : 0.10	c : 0.09	f : 0.09	! : 0.07	i : 0.06	g : 0.06	" : 0.03	# : 0.01	= : 0.01	
c : 0.29	d : 0.27	e : 0.13	f : 0.09	i : 0.06	g : 0.06	[ : 0.04	! : 0.01	= : 0.01	
c : 0.26	d : 0.23	f : 0.09	e : 0.09	b : 0.09	[ : 0.07	i : 0.06	g : 0.06	! : 0.01	= : 0.01	
c : 0.24	d : 0.23	a : 0.10	f : 0.09	e : 0.09	b : 0.09	i : 0.06	g : 0.06	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.24	d : 0.23	a : 0.10	f : 0.09	e : 0.09	b : 0.09	i : 0.06	g : 0.06	= : 0.01	
d : 0.24	c : 0.24	f : 0.09	e : 0.09	b : 0.09	i : 0.06	g : 0.06	] : 0.04	2 : 0.04	= : 0.01	
c : 0.29	d : 0.24	f : 0.09	e : 0.09	] : 0.09	i : 0.06	g : 0.06	2 : 0.04	= : 0.01	
d : 0.27	e : 0.15	c : 0.10	f : 0.09	] : 0.09	g : 0.07	i : 0.06	2 : 0.06	3 : 0.04	4 : 0.01	= : 0.01	
e : 0.21	c : 0.13	f : 0.10	3 : 0.09	g : 0.09	] : 0.09	d : 0.06	i : 0.06	2 : 0.06	4 : 0.04	6 : 0.01	= : 0.01	
c : 0.15	e : 0.13	f : 0.10	3 : 0.10	g : 0.09	d : 0.07	i : 0.06	b : 0.06	] : 0.06	2 : 0.04	4 : 0.04	6 : 0.01	h : 0.01	= : 0.01	
e : 0.18	c : 0.12	g : 0.10	d : 0.09	] : 0.07	3 : 0.07	i : 0.06	b : 0.06	2 : 0.04	4 : 0.04	f : 0.04	6 : 0.01	h : 0.01	> : 0.01	: : 0.01	= : 0.01	
e : 0.20	c : 0.13	d : 0.09	f : 0.09	g : 0.07	i : 0.06	] : 0.06	b : 0.04	3 : 0.04	4 : 0.03	h : 0.03	2 : 0.03	C : 0.01	6 : 0.01	a : 0.01	> : 0.01	o : 0.01	= : 0.01	

#score	1008.4010838833144
#seq	65
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105PMR_SBDS_transcript_m3_run2.txt

#BEAR
HHHH}A}CCCZZZEEEEEZZZFFFFFFCC	chr7:5340286-5340491(+)$1	205	171	200	21.6826
]a:DDDDYYA}EEEEE?????IIIIIIII	chr15:45492529-45492747(-)$1	218	151	180	21.0140
:::DDDD}BB~~~~DDDDZZZGGGGGGGe	chr5:175055151-175055390(+)$1	239	129	158	22.1287

#otherMatches

#Seq PSSM
AUUCACUCAUUUAUUCGuucguucauccc	chr7:5340286-5340491(+)$1	205	171	200	21.6826
GCACGGCAAGGGGAGUUUGUUUUAUUGUA	chr15:45492529-45492747(-)$1	218	151	180	21.0140
uuccucccucaacccuccacauguguccc	chr5:175055151-175055390(+)$1	239	129	158	22.1287

#DB
)))).).)))...)))))...))))))))	chr7:5340286-5340491(+)$1	1	171	200	21.6826
.).))))..).))))).....))))))))	chr15:45492529-45492747(-)$1	1	151	180	21.0140
...)))).))....))))...)))))))(	chr5:175055151-175055390(+)$1	1	129	158	22.1287

#PSSM
H : 0.33	] : 0.33	: : 0.33	
H : 0.33	a : 0.33	: : 0.33	
: : 0.66	H : 0.33	
D : 0.66	H : 0.33	
D : 0.66	} : 0.33	
D : 0.66	A : 0.33	
D : 0.66	} : 0.33	
C : 0.33	Y : 0.33	} : 0.33	
C : 0.33	Y : 0.33	B : 0.33	
C : 0.33	A : 0.33	B : 0.33	
Z : 0.33	} : 0.33	~ : 0.33	
Z : 0.33	E : 0.33	~ : 0.33	
Z : 0.33	E : 0.33	~ : 0.33	
E : 0.66	~ : 0.33	
E : 0.66	D : 0.33	
E : 0.66	D : 0.33	
E : 0.33	? : 0.33	D : 0.33	
E : 0.33	? : 0.33	D : 0.33	
Z : 0.66	? : 0.33	
Z : 0.66	? : 0.33	
Z : 0.66	? : 0.33	
F : 0.33	I : 0.33	G : 0.33	
F : 0.33	I : 0.33	G : 0.33	
F : 0.33	I : 0.33	G : 0.33	
F : 0.33	I : 0.33	G : 0.33	
F : 0.33	I : 0.33	G : 0.33	
F : 0.33	I : 0.33	G : 0.33	
C : 0.33	I : 0.33	G : 0.33	
C : 0.33	I : 0.33	e : 0.33	

#score	64.82543003890001
#seq	3
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_CDS_m2_run2.txt

#BEAR
eee"""eeeee[bbtttttttttttbb]eeeee333e	chr15:51017317-51017548(-)$1	231	92	129	19.6909
=========[bb!!assssssssssa22bb]======	chr2:170857712-170857982(+)$1	270	61	98	17.1541
:eeeee$$$$$eeeeettttttttttteeeee333ee	chr4:152048668-152048907(-)$1	239	0	37	20.5299
c:dddd[ccceeeeevvvvvvvvvvvvveeeee]ccc	chr3:49159559-49159824(-)$1	265	140	177	21.6451
fffffbb[gggggggvvvvvvvvvvvvvggggggg]b	chr17:47004269-47004520(+)$1	251	84	121	21.9593
ggggggbb[eeeeexxxxxxxxxxxxxxxeeeee22b	chr4:155508702-155508909(-)$1	207	95	132	21.4941
ee[dddd"""ccc[ccctttttttttttccc]ccc22	chr19:6684690-6684937(-)$1	247	137	174	21.2452
"""dddd"""ddddwwwwwwwwwwwwwwdddddddd3	chr6:33243496-33243710(+)$1	214	99	136	25.1193
======="""ddddssssssssssdddd=========	chr3:31641811-31642042(+)$1	231	177	214	17.2981
HHeeeee"""ddddtttttttttttdddd]eeeee::	chr7:99695144-99695443(-)$1	299	100	137	18.0700
hhhhhhhh!!cccxxxxxxxxxxxxxxxccchhhhhh	chr1:92185349-92185567(-)$1	218	78	115	20.7183
%dddd$$$$$eeeeevvvvvvvvvvvvveeeeedddd	chr15:55970024-55970269(-)$1	245	162	199	21.7087
ddd===========uuuuuuuuuuuu===========	chr2:219098974-219099219(+)$1	245	180	217	23.8121
ff"""bb####dddduuuuuuuuuuuudddd22bbff	chr8:62465487-62465777(-)$1	290	18	55	22.8602
ggggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:27401734-27401982(-)$1	248	48	85	19.8315
ccffffff!!cccddddtttttttttttdddd333cc	chr14:39784807-39785023(+)$1	216	103	140	20.9300
iiiii[hhhhhhhhvvvvvvvvvvvvvhhhhhhhhii	chr15:76576058-76576266(-)$1	208	81	118	19.6206
%ffffff[ayyyyyyyyyyyyyyyyaffffff4444e	chr3:133473269-133473514(+)$1	245	70	107	19.6514
dddffffff[eeeeeuuuuuuuuuuuueeeee]ffff	chr9:108097823-108098081(+)$1	258	200	237	22.2448
cc:hhhhhhhh[cccvvvvvvvvvvvvvccc22hhhh	chr11:71152372-71152586(-)$1	214	127	164	19.8938
eeeedddda[ccc^^^^^^^^^^^^^^^^^^^^ccc]	chr6:160494765-160495011(+)$1	246	104	141	19.9034
ffffff"""eeeeevvvvvvvvvvvvveeeee4444f	chr1:87558195-87558453(+)$1	258	94	131	23.7860
!ggggggg!!cccyyyyyyyyyyyyyyyyccc22ggg	chr2:21249561-21249777(-)$1	216	143	180	25.9854
ggggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^ggg	chr20:54941025-54941269(+)$1	244	30	67	20.2651
""bb%%%%%%ddddwwwwwwwwwwwwwwdddd]bb33	chr12:9256855-9257083(-)$1	228	142	179	21.3638
:gggggggbbddddtttttttttttdddd]bb]gggg	chr17:49062182-49062453(-)$1	271	230	267	18.8232
ffffff[dddd!!bbvvvvvvvvvvvvvbb22ddddf	chr16:11976770-11977013(-)$1	243	165	202	20.6781
!!bbdddd!!a[cccvvvvvvvvvvvvvccc]a22dd	chr4:74280659-74280864(+)$1	205	145	182	23.4629
iiiiiii^^^^^^^^^^^^^^^^^^^^^^iiiiiiii	chr19:51848336-51848579(-)$1	243	125	162	20.9228
eeeee[dddd[cccwwwwwwwwwwwwwwccc]dddde	chr1:118067665-118067935(+)$1	270	195	232	23.8507
ee::dddd!!bb[bbvvvvvvvvvvvvvbbbb22ddd	chr3:195789627-195789905(-)$1	278	167	204	19.5488
hhhhhhhh####cccuuuuuuuuuuuuccc4444hhh	chr16:56468563-56468822(-)$1	259	68	105	23.3468
!ffffff!!ddddxxxxxxxxxxxxxxxdddd4444f	chr3:184023549-184023817(+)$1	268	198	235	22.7295
[bb[ccc"""ddddyyyyyyyyyyyyyyyyddddccc	chr2:118860719-118860984(+)$1	265	90	127	24.6993
eeeee[gggggggxxxxxxxxxxxxxxxgggggggee	chr11:102221115-102221378(+)$1	263	191	228	21.7915
]ccceeeee[dddduuuuuuuuuuuudddd]eeeee:	chr2:216229596-216229804(-)$1	208	100	137	21.6143
ddd:::gggggggxxxxxxxxxxxxxxxggggggg==	chr10:73590782-73590997(-)$1	215	90	127	18.5850
+==========bbxxxxxxxxxxxxxxxbb]======	chr8:141856604-141856865(-)$1	261	59	96	21.9070
ccc[dddd[bbxxxxxxxxxxxxxxxbb]ddddccc:	chr15:76577880-76578102(-)$1	222	55	92	18.1962
fffff[bb!!ccc^^^^^^^^^^^^^^^^^^^^^^^^	chr14:56094526-56094790(+)$1	264	14	51	19.6631
a]hhhhhhhhdddduuuuuuuuuuuuddddccc[eee	chr9:131339362-131339582(+)$1	220	83	120	21.0778
ggggggg####bb[bbuuuuuuuuuuuubb]bbgggg	chr4:79393313-79393560(+)$1	247	197	234	23.0551
b:eeeee[ccc!!ddddtttttttttttdddd333cc	chr4:155529517-155529757(-)$1	240	80	117	19.3683
ffeeeee^^^^^^^^^^^^^^^^^^^^^eeeee333f	chr12:9317728-9317985(-)$1	257	111	148	20.5874
bb===========xxxxxxxxxxxxxxx=========	chr16:30747565-30747780(+)$1	215	82	119	22.7861
[bbdddd"""cccwwwwwwwwwwwwwwccc]dddd22	chr5:77717606-77717855(+)$1	249	22	59	24.4381
!!ccc[bbffffffxxxxxxxxxxxxxxxffffff]b	chr16:72094204-72094490(+)$1	286	221	258	19.8687
ccc[ccc"""ccczzzzzzzzzzzzzzzzzccc]ccc	chr9:35721602-35721873(-)$1	271	33	70	19.1758
dddd!!dddd[cccuuuuuuuuuuuucccdddd22dd	chr12:9258758-9258966(-)$1	208	128	165	22.3993
ffeeeee^^^^^^^^^^^^^^^^^^^^^eeeee333f	chr12:9243853-9244057(-)$1	204	121	158	20.5874
####a[ffffffyyyyyyyyyyyyyyyyffffff]a]	chr1:92182084-92182364(-)$1	280	173	210	22.4933
ggggggg####ddddtttttttttttdddd333gggg	chr9:95076914-95077190(-)$1	276	86	123	22.9546
ggg]cccgggggggwwwwwwwwwwwwwwggggggg::	chr2:21233055-21233259(-)$1	204	126	163	22.6281
ggggggg"""ddddwwwwwwwwwwwwwwdddd4444g	chr7:156974710-156974996(+)$1	286	79	116	27.0207
hhhhhhhgggggggvvvvvvvvvvvvvggggggg22h	chr3:195791171-195791393(-)$1	222	104	141	21.6485
eeeee22eeeeebbwwwwwwwwwwwwwwbb:iiiiii	chr22:36680429-36680658(-)$1	229	124	161	21.7899
!cccccc"""ddddssssssssssdddd4444ccc]c	chr12:9243877-9244100(-)$1	223	159	196	16.5806
ddd[dddd!!cccyyyyyyyyyyyyyyyyccc22ddd	chr16:449582-449834(+)$1	252	14	51	24.5281
ddbba####eeeeexxxxxxxxxxxxxxxeeeee444	chr11:62285897-62286159(-)$1	262	85	122	21.6479
cc[dddd####ddddvvvvvvvvvvvvvdddd4444d	chrX:135957316-135957532(-)$1	216	35	72	24.4760
eeeee$$$$$ffffffuuuuuuuuuuuuffffff22e	chr1:9815160-9815428(-)$1	268	99	136	21.3912

#otherMatches

#Seq PSSM
CUGUUUCAAUAUUGGGUUUUGGAGACAUUAUUGUACC	chr15:51017317-51017548(-)$1	231	92	129	19.6909
CUUUAAAAUUAAUUGUAUUUGUCUUCUUUUUAUUUUG	chr2:170857712-170857982(+)$1	270	61	98	17.1541
ACUGUGUUUCUAUAUAUUUAAAUUUUUUAUGUCUUCA	chr4:152048668-152048907(-)$1	239	0	37	20.5299
AGCCUGGCAGAUGUGGAUGCGAUCCUGGCACGUACUG	chr3:49159559-49159824(-)$1	265	140	177	21.6451
UUGACUACCAGUCCCUCUUGAUGCGCCUGGGACUGAU	chr17:47004269-47004520(+)$1	251	84	121	21.9593
UUCAGACCGUGAUAAUACCUACAACCGAGUGUCAGAG	chr4:155508702-155508909(-)$1	207	95	132	21.4941
CAAGGCACCUUGUCGGUAAGGAACAGAAACCCACACC	chr19:6684690-6684937(-)$1	247	137	174	21.2452
AUGUGGUGUUGAGGAAAGCAGACAUUGACCUCACCAA	chr6:33243496-33243710(+)$1	214	99	136	25.1193
AUGUUUUGUAUUCAUUCAUUUUAUUGAAGAGAUAUUU	chr3:31641811-31642042(+)$1	231	177	214	17.2981
AGCUUCAAUCGCCCCAGAAAUAUACGGGCAUGAAGAU	chr7:99695144-99695443(-)$1	299	100	137	18.0700
UGAGAAGAUGAUCGUGGCUGUAGAAAAAGAUUCUUUU	chr1:92185349-92185567(-)$1	218	78	115	20.7183
UAAUGUACAUGCUGAAACCAUGUCAAGCUCAGCCAUU	chr15:55970024-55970269(-)$1	245	162	199	21.7087
GGGAAGAGAGGUGUCCUUUUUAUAUUAUGCUUUUUUU	chr2:219098974-219099219(+)$1	245	180	217	23.8121
CAUAAGAAAAGCUAUGUAAAUCAAUUAAUGGAAUCUG	chr8:62465487-62465777(-)$1	290	18	55	22.8602
uaugaaaaaaaauuuaaaaauuaCCUUGUCUUUCUCA	chr11:27401734-27401982(-)$1	248	48	85	19.8315
CAUGAUAAUUGGGUAAGUUUAAAAUUUCCUUAAGUCU	chr14:39784807-39785023(+)$1	216	103	140	20.9300
UUUCAUCUUUUUAAAUGAGGUCGAGGCUUGAAGAGUG	chr15:76576058-76576266(-)$1	208	81	118	19.6206
UCCACAGACUUUCUAUUAUGCUGUUGCUGUGGUGAAG	chr3:133473269-133473514(+)$1	245	70	107	19.6514
CUCUUUGUUAAAUAUAAAUUUGCCCUAGUGUUAAAUA	chr9:108097823-108098081(+)$1	258	200	237	22.2448
GCCUGCAAGCCUGGCUCCUCACGCACCUGCUCUGGUU	chr11:71152372-71152586(-)$1	214	127	164	19.8938
GAUGAGAGUGAGGAUGAUGCCUCCGAUACCAACCCUG	chr6:160494765-160495011(+)$1	246	104	141	19.9034
UUUCUGAGAUUUGGAGAUGAUUAUAGACCAGGGUUAC	chr1:87558195-87558453(+)$1	258	94	131	23.7860
AAGGAAAGCUUUGGGUCUCAAUGCAAAAACAAUUCUU	chr2:21249561-21249777(-)$1	216	143	180	25.9854
UUAUAGCCAAAUCAAUUUCUUCAUUUAAUCCCUUGCU	chr20:54941025-54941269(+)$1	244	30	67	20.2651
GAGGAAAUGAAGCAAACUAUUACUCCAAUGCUACCAC	chr12:9256855-9257083(-)$1	228	142	179	21.3638
GUAGAUUGGUUUAUGUUUUAAAGAAAUGAUACUCAGU	chr17:49062182-49062453(-)$1	271	230	267	18.8232
CUAUCUAUUUAUUGAuuuuuuuucuuuuucuuuaaga	chr16:11976770-11977013(-)$1	243	165	202	20.6781
UGAGACUUGCCAAGACAUAUGAAACCACUCUAGAGAA	chr4:74280659-74280864(+)$1	205	145	182	23.4629
GAGAUGGCAAUAAAACUGACUCUCAACAUCUAUCUCU	chr19:51848336-51848579(-)$1	243	125	162	20.9228
GUCUUCUUCACCACUCCUUACCUUCUAUGUGAUGGAA	chr1:118067665-118067935(+)$1	270	195	232	23.8507
CUGAAUGGCUAGAGGUAUUCUUUAUCAUCCCUUCCCA	chr3:195789627-195789905(-)$1	278	167	204	19.5488
UUUGUAAUUUCAGUAUCCAUAUAUUCCUGCACAUAUU	chr16:56468563-56468822(-)$1	259	68	105	23.3468
GCUGACAGUAACUGGAUACAACAGGGAGGGUUUAUGU	chr3:184023549-184023817(+)$1	268	198	235	22.7295
UCUAGGAGAACCACAUAAAUUUAAAAGAGAGUGGUCC	chr2:118860719-118860984(+)$1	265	90	127	24.6993
GGAGGCAUUUUCCCAACUGUCCAUUUUUGGAAAAUUC	chr11:102221115-102221378(+)$1	263	191	228	21.7915
GGCAACGUGUUAUGAUGAUGGGAAGACAUACCACGUA	chr2:216229596-216229804(-)$1	208	100	137	21.6143
CCUGGACAUCAUUAAAGGAGAAAUGGUAAGUGAUGGG	chr10:73590782-73590997(-)$1	215	90	127	18.5850
UGUUGUUUUUCCCAUUCCUUUUGUUGUAGGUGAAGAG	chr8:141856604-141856865(-)$1	261	59	96	21.9070
UGGCUUGACCAGAAAUUAACAAAAAGUGAUCGACCAG	chr15:76577880-76578102(-)$1	222	55	92	18.1962
caugguguauaugugccacauuucauuuUCAUAAUUU	chr14:56094526-56094790(+)$1	264	14	51	19.6631
AGCAGUUAAUGGCCUCUGAUGAUUUUGGCCGAGACCU	chr9:131339362-131339582(+)$1	220	83	120	21.0778
UGGGAGAAAUCUAUGCUAAUGUCACACUGCCUAUCUC	chr4:79393313-79393560(+)$1	247	197	234	23.0551
ACAGUCUGCCAUCCCAUAUGCAUUAAGAGUGGAACUG	chr4:155529517-155529757(-)$1	240	80	117	19.3683
GACUUGGUAUCUCUUCCACUGCCUCUCUCCGAGCCUU	chr12:9317728-9317985(-)$1	257	111	148	20.5874
GCCGGCCUGGGGCUGAGGAUGAGGAGAUGUCCCGGGC	chr16:30747565-30747780(+)$1	215	82	119	22.7861
UGCAGUAACACUGUUUCUAAAUAUCUUCGGAUGCUUG	chr5:77717606-77717855(+)$1	249	22	59	24.4381
AAAUGCCAAUUUUAAAUUUACUGACCAUCUGAAGUAU	chr16:72094204-72094490(+)$1	286	221	258	19.8687
CCUCUGACCUGUAACACCAACACCAACCUCUGCCUCA	chr9:35721602-35721873(-)$1	271	33	70	19.1758
UGGGCAGGUGGAGUAUUUUCCAGUUCACUCAUCAACC	chr12:9258758-9258966(-)$1	208	128	165	22.3993
GACUUGGUAUCUCUUCCACUGCCUCUCUCCGAGCCUU	chr12:9243853-9244057(-)$1	204	121	158	20.5874
UAAUGGAUUUCCGGGAGAUAUGGAUGAAGGAGAUGCU	chr1:92182084-92182364(-)$1	280	173	210	22.4933
UUCCAUGAAACAUGAGGAUCCCAGUAUCAUAUCCAUG	chr9:95076914-95077190(-)$1	276	86	123	22.9546
GAUGAAAUCAUUGAAAAAUUAAAAAGUCUUGAUGAGC	chr2:21233055-21233259(-)$1	204	126	163	22.6281
UUUCUUUUUCAGGCAACAAGUUUUUACAGCCUUCACA	chr7:156974710-156974996(+)$1	286	79	116	27.0207
UGUAGUUGGGGCCCAGAGAGAUGCAUGGGGCCCUGGA	chr3:195791171-195791393(-)$1	222	104	141	21.6485
AGGUGCGUCGGACCGAGAAGAAGCUGAAGGAUGUGCU	chr22:36680429-36680658(-)$1	229	124	161	21.7899
UGCUGGACUUGGUAUCUCUUCCACUGCCUCUCUCCGA	chr12:9243877-9244100(-)$1	223	159	196	16.5806
CUUCUCCCCAACCAUUAUCUCUCGCUGCAGGUCUGGG	chr16:449582-449834(+)$1	252	14	51	24.5281
AGCUCGAAGGGCCCGAUGUUUCUCUAAAGGGGCCAGG	chr11:62285897-62286159(-)$1	262	85	122	21.6479
UGCACCACCACCACGAGAUUAUACUUACCGUGAUUAU	chrX:135957316-135957532(-)$1	216	35	72	24.4760
CCCUUUGAUGCAGUGGUAGUGGAUAAAUCCACUGGUG	chr1:9815160-9815428(-)$1	268	99	136	21.3912

#DB
(((...(((((.((...........)).)))))...)	chr15:51017317-51017548(-)$1	1	92	129	19.6909
(((((((((.((..(..........)..)).))))))	chr2:170857712-170857982(+)$1	1	61	98	17.1541
.(((((.....(((((...........)))))...))	chr4:152048668-152048907(-)$1	1	0	37	20.5299
).((((.((((((((.............))))).)))	chr3:49159559-49159824(-)$1	1	140	177	21.6451
(((((((.(((((((.............))))))).)	chr17:47004269-47004520(+)$1	1	84	121	21.9593
((((((((.(((((...............)))))..)	chr4:155508702-155508909(-)$1	1	95	132	21.4941
((.((((...(((.(((...........))).)))..	chr19:6684690-6684937(-)$1	1	137	174	21.2452
...((((...((((..............)))))))).	chr6:33243496-33243710(+)$1	1	99	136	25.1193
(((((((...((((..........)))))))))))))	chr3:31641811-31642042(+)$1	1	177	214	17.2981
(((((((...((((...........)))).)))))..	chr7:99695144-99695443(-)$1	1	100	137	18.0700
((((((((..(((...............)))))))))	chr1:92185349-92185567(-)$1	1	78	115	20.7183
.((((.....(((((.............)))))))))	chr15:55970024-55970269(-)$1	1	162	199	21.7087
((((((((((((((............)))))))))))	chr2:219098974-219099219(+)$1	1	180	217	23.8121
((...((....((((............))))..))))	chr8:62465487-62465777(-)$1	1	18	55	22.8602
(((((((..............................	chr11:27401734-27401982(-)$1	1	48	85	19.8315
((((((((..(((((((...........))))...))	chr14:39784807-39785023(+)$1	1	103	140	20.9300
(((((.((((((((.............))))))))))	chr15:76576058-76576266(-)$1	1	81	118	19.6206
.((((((.(................)))))))....)	chr3:133473269-133473514(+)$1	1	70	107	19.6514
)))((((((.(((((............))))).))))	chr9:108097823-108098081(+)$1	1	200	237	22.2448
)).((((((((.(((.............)))..))))	chr11:71152372-71152586(-)$1	1	127	164	19.8938
(((((((((.(((....................))).	chr6:160494765-160495011(+)$1	1	104	141	19.9034
((((((...(((((.............)))))....)	chr1:87558195-87558453(+)$1	1	94	131	23.7860
.(((((((..(((................)))..)))	chr2:21249561-21249777(-)$1	1	143	180	25.9854
(((((((...........................)))	chr20:54941025-54941269(+)$1	1	30	67	20.2651
..((......((((..............)))).))..	chr12:9256855-9257083(-)$1	1	142	179	21.3638
.(((((((((((((...........)))).)).))))	chr17:49062182-49062453(-)$1	1	230	267	18.8232
((((((.((((..((.............))..)))))	chr16:11976770-11977013(-)$1	1	165	202	20.6781
..((((((..(.(((.............))).)..))	chr4:74280659-74280864(+)$1	1	145	182	23.4629
(((((((......................))))))))	chr19:51848336-51848579(-)$1	1	125	162	20.9228
(((((.((((.(((..............))).)))))	chr1:118067665-118067935(+)$1	1	195	232	23.8507
))..((((..((.((.............))))..)))	chr3:195789627-195789905(-)$1	1	167	204	19.5488
((((((((....(((............)))....)))	chr16:56468563-56468822(-)$1	1	68	105	23.3468
.((((((..((((...............))))....)	chr3:184023549-184023817(+)$1	1	198	235	22.7295
.((.(((...((((................)))))))	chr2:118860719-118860984(+)$1	1	90	127	24.6993
(((((.(((((((...............)))))))))	chr11:102221115-102221378(+)$1	1	191	228	21.7915
.)))(((((.((((............)))).))))).	chr2:216229596-216229804(-)$1	1	100	137	21.6143
)))...(((((((...............)))))))((	chr10:73590782-73590997(-)$1	1	90	127	18.5850
.((((((((((((...............)).))))))	chr8:141856604-141856865(-)$1	1	59	96	21.9070
(((.((((.((...............)).))))))).	chr15:76577880-76578102(-)$1	1	55	92	18.1962
(((((.((..(((........................	chr14:56094526-56094790(+)$1	1	14	51	19.6631
).))))))))((((............))))(((.(((	chr9:131339362-131339582(+)$1	1	83	120	21.0778
(((((((....((.((............)).))))))	chr4:79393313-79393560(+)$1	1	197	234	23.0551
).(((((.(((..((((...........))))...))	chr4:155529517-155529757(-)$1	1	80	117	19.3683
(((((((.....................)))))...)	chr12:9317728-9317985(-)$1	1	111	148	20.5874
(((((((((((((...............)))))))))	chr16:30747565-30747780(+)$1	1	82	119	22.7861
.((((((...(((..............))).))))..	chr5:77717606-77717855(+)$1	1	22	59	24.4381
..(((.((((((((...............)))))).)	chr16:72094204-72094490(+)$1	1	221	258	19.8687
(((.(((...(((.................))).)))	chr9:35721602-35721873(-)$1	1	33	70	19.1758
((((..((((.(((............)))))))..))	chr12:9258758-9258966(-)$1	1	128	165	22.3993
(((((((.....................)))))...)	chr12:9243853-9244057(-)$1	1	121	158	20.5874
....(.((((((................)))))).).	chr1:92182084-92182364(-)$1	1	173	210	22.4933
(((((((....((((...........))))...))))	chr9:95076914-95077190(-)$1	1	86	123	22.9546
))).)))(((((((..............)))))))..	chr2:21233055-21233259(-)$1	1	126	163	22.6281
(((((((...((((..............))))....)	chr7:156974710-156974996(+)$1	1	79	116	27.0207
((((((((((((((.............)))))))..)	chr3:195791171-195791393(-)$1	1	104	141	21.6485
)))))..)))))((..............)).((((((	chr22:36680429-36680658(-)$1	1	124	161	21.7899
.((((((...((((..........))))....))).)	chr12:9243877-9244100(-)$1	1	159	196	16.5806
(((.((((..(((................)))..)))	chr16:449582-449834(+)$1	1	14	51	24.5281
(((((....(((((...............)))))...	chr11:62285897-62286159(-)$1	1	85	122	21.6479
((.((((....((((.............))))....)	chrX:135957316-135957532(-)$1	1	35	72	24.4760
(((((.....((((((............))))))..)	chr1:9815160-9815428(-)$1	1	99	136	21.3912

#PSSM
e : 0.13	f : 0.11	g : 0.11	c : 0.09	d : 0.09	! : 0.08	h : 0.04	= : 0.03	: : 0.03	" : 0.03	% : 0.03	i : 0.03	[ : 0.03	b : 0.03	H : 0.01	] : 0.01	+ : 0.01	a : 0.01	# : 0.01	
e : 0.14	f : 0.14	g : 0.14	d : 0.11	c : 0.11	= : 0.04	h : 0.04	b : 0.04	: : 0.03	" : 0.03	i : 0.03	! : 0.03	H : 0.01	] : 0.01	# : 0.01	
e : 0.18	g : 0.14	d : 0.11	f : 0.11	b : 0.08	c : 0.08	= : 0.06	h : 0.06	[ : 0.03	" : 0.03	i : 0.03	: : 0.03	# : 0.01	
e : 0.16	f : 0.13	g : 0.13	d : 0.11	= : 0.08	h : 0.08	[ : 0.06	b : 0.04	c : 0.04	" : 0.03	i : 0.03	: : 0.03	# : 0.01	] : 0.01	
d : 0.18	e : 0.16	f : 0.13	g : 0.13	= : 0.08	h : 0.08	c : 0.08	" : 0.03	i : 0.03	a : 0.03	% : 0.01	: : 0.01	! : 0.01	
d : 0.16	g : 0.13	e : 0.09	f : 0.09	[ : 0.09	= : 0.08	h : 0.08	c : 0.06	b : 0.03	$ : 0.03	" : 0.01	% : 0.01	i : 0.01	: : 0.01	! : 0.01	2 : 0.01	# : 0.01	
d : 0.18	g : 0.14	e : 0.09	h : 0.09	= : 0.08	b : 0.08	f : 0.08	c : 0.06	$ : 0.04	[ : 0.03	" : 0.01	% : 0.01	i : 0.01	2 : 0.01	# : 0.01	
" : 0.16	d : 0.13	g : 0.09	h : 0.08	# : 0.08	^ : 0.08	= : 0.06	e : 0.04	$ : 0.04	[ : 0.04	b : 0.04	f : 0.04	c : 0.01	% : 0.01	! : 0.01	
" : 0.16	! : 0.13	# : 0.09	g : 0.08	^ : 0.08	= : 0.06	e : 0.04	$ : 0.04	h : 0.04	f : 0.04	d : 0.04	c : 0.03	[ : 0.03	a : 0.03	% : 0.01	b : 0.01	
" : 0.14	! : 0.11	e : 0.08	g : 0.08	# : 0.08	^ : 0.08	[ : 0.06	d : 0.06	$ : 0.04	= : 0.04	h : 0.04	c : 0.03	b : 0.03	f : 0.03	y : 0.01	% : 0.01	
d : 0.19	c : 0.16	e : 0.13	g : 0.08	# : 0.08	^ : 0.08	b : 0.04	= : 0.04	f : 0.04	h : 0.03	[ : 0.03	$ : 0.01	y : 0.01	a : 0.01	
d : 0.22	c : 0.18	e : 0.13	g : 0.08	^ : 0.08	b : 0.06	[ : 0.04	f : 0.04	= : 0.03	! : 0.03	h : 0.01	y : 0.01	# : 0.01	x : 0.01	
c : 0.22	d : 0.22	e : 0.11	g : 0.08	^ : 0.08	b : 0.06	! : 0.04	= : 0.03	y : 0.03	f : 0.03	h : 0.01	[ : 0.01	x : 0.01	
d : 0.24	e : 0.11	x : 0.11	^ : 0.11	c : 0.08	b : 0.06	y : 0.06	g : 0.04	[ : 0.03	f : 0.03	! : 0.01	= : 0.01	h : 0.01	w : 0.01	z : 0.01	
x : 0.16	w : 0.11	^ : 0.11	d : 0.08	y : 0.08	e : 0.06	c : 0.06	u : 0.06	t : 0.04	v : 0.04	b : 0.04	s : 0.03	a : 0.01	g : 0.01	z : 0.01	f : 0.01	
v : 0.18	x : 0.16	w : 0.11	u : 0.11	^ : 0.11	y : 0.08	t : 0.06	s : 0.04	d : 0.03	e : 0.01	c : 0.01	b : 0.01	z : 0.01	f : 0.01	
v : 0.18	x : 0.16	u : 0.14	w : 0.11	^ : 0.11	t : 0.08	y : 0.08	s : 0.04	d : 0.03	c : 0.01	z : 0.01	
v : 0.18	x : 0.16	u : 0.14	t : 0.13	w : 0.11	^ : 0.11	y : 0.08	s : 0.04	z : 0.01	
v : 0.18	x : 0.16	u : 0.14	t : 0.13	w : 0.11	^ : 0.11	y : 0.08	s : 0.04	z : 0.01	
v : 0.18	x : 0.16	u : 0.14	t : 0.13	w : 0.11	^ : 0.11	y : 0.08	s : 0.04	z : 0.01	
v : 0.18	x : 0.16	u : 0.14	t : 0.13	w : 0.11	^ : 0.11	y : 0.08	s : 0.04	z : 0.01	
v : 0.18	x : 0.16	u : 0.14	t : 0.13	w : 0.11	^ : 0.11	y : 0.08	s : 0.04	z : 0.01	
v : 0.18	x : 0.16	u : 0.14	t : 0.13	w : 0.11	^ : 0.11	y : 0.08	s : 0.04	z : 0.01	
v : 0.18	x : 0.16	u : 0.14	t : 0.13	w : 0.11	^ : 0.11	y : 0.08	s : 0.04	z : 0.01	
v : 0.18	x : 0.16	u : 0.14	t : 0.13	w : 0.11	^ : 0.11	y : 0.08	d : 0.03	s : 0.01	z : 0.01	
v : 0.18	x : 0.16	u : 0.14	w : 0.11	^ : 0.11	t : 0.08	d : 0.06	y : 0.06	a : 0.03	b : 0.01	z : 0.01	
v : 0.18	x : 0.14	w : 0.11	d : 0.11	^ : 0.11	u : 0.08	t : 0.06	y : 0.06	b : 0.03	2 : 0.01	= : 0.01	f : 0.01	z : 0.01	c : 0.01	
x : 0.14	v : 0.13	d : 0.13	^ : 0.11	w : 0.09	y : 0.06	e : 0.04	t : 0.04	c : 0.04	u : 0.03	] : 0.01	2 : 0.01	= : 0.01	h : 0.01	f : 0.01	b : 0.01	z : 0.01	g : 0.01	
d : 0.21	e : 0.13	c : 0.13	b : 0.09	g : 0.08	^ : 0.08	x : 0.04	= : 0.04	f : 0.04	y : 0.04	h : 0.01	] : 0.01	z : 0.01	4 : 0.01	
d : 0.21	e : 0.16	c : 0.14	b : 0.09	g : 0.08	^ : 0.06	f : 0.06	= : 0.04	] : 0.03	h : 0.01	i : 0.01	y : 0.01	z : 0.01	4 : 0.01	
e : 0.18	d : 0.18	c : 0.14	] : 0.08	g : 0.08	^ : 0.06	f : 0.06	= : 0.04	b : 0.03	4 : 0.03	h : 0.01	2 : 0.01	i : 0.01	3 : 0.01	: : 0.01	
e : 0.19	d : 0.18	= : 0.08	g : 0.08	^ : 0.06	f : 0.06	c : 0.06	] : 0.04	2 : 0.04	b : 0.04	h : 0.03	i : 0.03	4 : 0.03	3 : 0.01	
e : 0.14	d : 0.11	4 : 0.09	= : 0.08	g : 0.08	2 : 0.08	3 : 0.06	c : 0.06	^ : 0.06	] : 0.04	f : 0.04	h : 0.03	i : 0.03	a : 0.01	b : 0.01	
g : 0.13	3 : 0.09	d : 0.09	4 : 0.09	= : 0.08	2 : 0.08	e : 0.06	c : 0.06	f : 0.06	h : 0.04	^ : 0.04	] : 0.03	b : 0.03	i : 0.03	[ : 0.01	
g : 0.14	c : 0.11	d : 0.11	3 : 0.09	4 : 0.09	= : 0.08	2 : 0.08	h : 0.06	e : 0.04	b : 0.03	^ : 0.03	f : 0.03	i : 0.03	] : 0.01	
d : 0.13	c : 0.11	= : 0.09	4 : 0.09	2 : 0.08	g : 0.08	3 : 0.06	e : 0.06	] : 0.04	h : 0.04	i : 0.04	: : 0.03	f : 0.03	^ : 0.03	a : 0.01	
e : 0.11	f : 0.11	= : 0.09	c : 0.09	d : 0.09	g : 0.09	: : 0.06	h : 0.06	b : 0.04	i : 0.04	2 : 0.03	3 : 0.03	^ : 0.03	] : 0.03	4 : 0.01	

#score	1307.1060757598384
#seq	61
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_CDS_m3_run1.txt

#BEAR
fffff]ccc:==========nnnnn==========GGG	chrM:14176-14401(-)$1	225	166	204	18.0943
hhhhhhh[ccc[a[bb[bboooooobb]bb]a]ccchh	chrM:14201-14410(-)$1	209	152	190	20.1684
iiii::==========[cccmmmmccc]==========	chrM:14366-14583(-)$1	217	77	115	15.7631
fffff]ccc:==========nnnnn==========fff	chrM:14160-14376(-)$1	216	141	179	19.2510
hhhhhhh[ccc[a[bb[bboooooobb]bb]a]ccchh	chrM:14210-14418(-)$1	208	160	198	20.1684
ffffff[ffffff[bb!!cccmmmmccc4444bb22ff	chrM:14247-14494(-)$1	247	14	52	15.0227

#otherMatches

#Seq PSSM
AUUAUGGGCGUUGAUUAGUAGUGGUUACUGGUUGAACA	chrM:14176-14401(-)$1	225	166	204	18.0943
UAUUGGUGCGGGGGCUUUGUAUGAUUAUGGGCGUUGAU	chrM:14201-14410(-)$1	209	152	190	20.1684
UUAAUUUAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUA	chrM:14366-14583(-)$1	217	77	115	15.7631
AUUAUGGGCGUUGAUUAGUAGUGGUUACUGGUUGAACA	chrM:14160-14376(-)$1	216	141	179	19.2510
UAUUGGUGCGGGGGCUUUGUAUGAUUAUGGGCGUUGAU	chrM:14210-14418(-)$1	208	160	198	20.1684
UGUCUUUGGAUAUACUACAGCGAUGGCUAUUGAGGAGU	chrM:14247-14494(-)$1	247	14	52	15.0227

#DB
))))).))).((((((((((.....)))))))))))))	chrM:14176-14401(-)$1	1	166	204	18.0943
(((((((.(((.(.((.((......)).)).).)))))	chrM:14201-14410(-)$1	1	152	190	20.1684
))))..((((((((((.(((....))).))))))))))	chrM:14366-14583(-)$1	1	77	115	15.7631
))))).))).((((((((((.....))))))))))(((	chrM:14160-14376(-)$1	1	141	179	19.2510
(((((((.(((.(.((.((......)).)).).)))))	chrM:14210-14418(-)$1	1	160	198	20.1684
((((((.((((((.((..(((....)))....))..))	chrM:14247-14494(-)$1	1	14	52	15.0227

#PSSM
f : 0.50	h : 0.33	i : 0.16	
f : 0.50	h : 0.33	i : 0.16	
f : 0.50	h : 0.33	i : 0.16	
f : 0.50	h : 0.33	i : 0.16	
f : 0.50	h : 0.33	: : 0.16	
] : 0.33	h : 0.33	: : 0.16	f : 0.16	
c : 0.33	h : 0.33	= : 0.16	[ : 0.16	
c : 0.33	[ : 0.33	= : 0.16	f : 0.16	
c : 0.66	= : 0.16	f : 0.16	
: : 0.33	c : 0.33	= : 0.16	f : 0.16	
= : 0.50	c : 0.33	f : 0.16	
= : 0.50	[ : 0.33	f : 0.16	
= : 0.50	a : 0.33	f : 0.16	
= : 0.50	[ : 0.50	
= : 0.50	b : 0.50	
= : 0.50	b : 0.50	
[ : 0.50	= : 0.33	! : 0.16	
= : 0.33	b : 0.33	c : 0.16	! : 0.16	
= : 0.33	b : 0.33	c : 0.33	
= : 0.33	o : 0.33	c : 0.33	
n : 0.33	o : 0.33	m : 0.16	c : 0.16	
n : 0.33	o : 0.33	m : 0.33	
n : 0.33	o : 0.33	m : 0.33	
n : 0.33	o : 0.33	m : 0.33	
n : 0.33	o : 0.33	c : 0.16	m : 0.16	
= : 0.33	b : 0.33	c : 0.33	
= : 0.33	b : 0.33	c : 0.33	
] : 0.50	= : 0.33	c : 0.16	
= : 0.50	b : 0.33	4 : 0.16	
= : 0.50	b : 0.33	4 : 0.16	
= : 0.50	] : 0.33	4 : 0.16	
= : 0.50	a : 0.33	4 : 0.16	
= : 0.50	] : 0.33	b : 0.16	
= : 0.50	c : 0.33	b : 0.16	
= : 0.50	c : 0.33	2 : 0.16	
c : 0.33	G : 0.16	= : 0.16	f : 0.16	2 : 0.16	
h : 0.33	f : 0.33	G : 0.16	= : 0.16	
h : 0.33	f : 0.33	G : 0.16	= : 0.16	

#score	108.46829497463335
#seq	6
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_transcript_m2_run2.txt

#BEAR
ggggggg^^^^^^^^^^^^^^^^^	chr2:216277450-216277690(-)$1	240	179	203	16.8437
cc:bb[bbuuuuuuuuuuuubb]b	chr20:34229913-34230170(-)$1	257	131	155	19.6179
ff[ddddyyyyyyyyyyyyyyyyd	chr3:176892365-176892678(-)$1	313	58	82	19.7199
ddd[cccvvvvvvvvvvvvvccc]	chr11:102053893-102054154(+)$1	261	72	96	23.6238
hhcccbbvvvvvvvvvvvvvbb]c	chr2:134899302-134899550(+)$1	248	67	91	22.1677
##cccbbuuuuuuuuuuuubb]cc	chr20:34224061-34224312(-)$1	251	23	47	21.3221
[bb[ccc^^^^^^^^^^^^^^^^^	chr17:44228681-44228953(-)$1	272	58	82	16.7755
"""dddduuuuuuuuuuuudddd]	chr6:2272913-2273184(+)$1	271	182	206	21.6704
[ffffffxxxxxxxxxxxxxxxff	chr7:138205879-138206149(+)$1	270	48	72	17.8079
fff[axxxxxxxxxxxxxxxa]ff	chr14:39737919-39738180(+)$1	261	34	58	17.4233
:ffffffuuuuuuuuuuuufffff	chr17:77966395-77966674(-)$1	279	179	203	20.3246
hh!!cccvvvvvvvvvvvvvccc4	chr8:13105990-13106212(-)$1	222	162	186	23.7388
cc!!cccvvvvvvvvvvvvvccc2	chr17:55513839-55514172(+)$1	333	265	289	23.9427
"""dddd^^^^^^^^^^^^^^^^^	chr17:80519179-80519565(+)$1	386	96	120	16.6645
ddbb[cccuuuuuuuuuuuuccc]	chr6:155583430-155583744(-)$1	314	214	238	21.9705
c!!ccc[bbtttttttttttbb]c	chr12:123464008-123464284(+)$1	276	120	144	19.9044
[ffffffvvvvvvvvvvvvvffff	chr13:98892605-98892890(+)$1	285	253	277	22.8042
iiiiiiiiitttttttttttiiii	chr17:57697610-57697877(+)$1	267	220	244	19.7520
:eeeeewwwwwwwwwwwwwweeee	chr11:43708885-43709155(+)$1	270	50	74	20.9629
f!!fffffftttttttttttffff	chr20:42837294-42837615(-)$1	321	54	78	19.5254
gggggggvvvvvvvvvvvvvgggg	chr1:893811-894102(-)$1	291	241	265	23.4068
dcccyyyyyyyyyyyyyyyyccc]	chr7:104939234-104939561(-)$1	327	65	89	19.8562
eeeee[avvvvvvvvvvvvva]ee	chr8:128223959-128224216(-)$1	257	43	67	22.9598
bb[ddddvvvvvvvvvvvvvdddd	chr20:8428341-8428599(+)$1	258	39	63	22.5489
::eeeeeuuuuuuuuuuuueeeee	chr10:77610451-77610783(+)$1	332	191	215	19.7276
:ffffffwwwwwwwwwwwwwwfff	chr4:107120334-107120610(-)$1	276	110	134	21.3189
gggggggvvvvvvvvvvvvvgggg	chrX:20246463-20246746(-)$1	283	185	209	23.4068
!!eeeeewwwwwwwwwwwwwweee	chr10:77416885-77417180(+)$1	295	216	240	22.5643
f!!ddddwwwwwwwwwwwwwwddd	chr8:97570377-97570674(+)$1	297	89	113	22.2648
::::cccwwwwwwwwwwwwwwccc	chr9:139698080-139698389(+)$1	309	266	290	19.4447
b!!dddduuuuuuuuuuuudddd]	chr4:152172120-152172397(-)$1	277	201	225	21.6029
ccc[ddddtttttttttttdddd]	chrX:77374133-77374432(+)$1	299	118	142	19.9641
=======wwwwwwwwwwwwww===	chrX:20205772-20206026(-)$1	254	190	214	22.8180
"ggggggguuuuuuuuuuuugggg	chr2:63141649-63141982(+)$1	333	275	299	22.1180
bb[bb[ccctttttttttttccc]	chr9:116824096-116824345(-)$1	249	47	71	20.1265
hhhhhhhhuuuuuuuuuuuuhhhh	chr17:80419989-80420273(+)$1	284	109	133	19.7301
""eeeeevvvvvvvvvvvvveeee	chr15:67384897-67385158(+)$1	261	18	42	23.0820
iiiiiii^^^^^^^^^^^^^^^^^	chr9:104167642-104167905(+)$1	263	95	119	16.8404
gggggddddtttttttttttdddd	chr16:89497816-89498092(-)$1	276	130	154	19.5830
"ffffffvvvvvvvvvvvvvffff	chr5:95270617-95270921(-)$1	304	199	223	22.7708
eee[cccvvvvvvvvvvvvvccce	chr16:52573530-52573852(-)$1	322	20	44	23.6508
gcccccc^^^^^^^^^^^^^^^^^	chr11:16760354-16760625(+)$1	271	18	42	17.0083
[ccccccvvvvvvvvvvvvvccc]	chr16:31198432-31198683(+)$1	251	17	41	24.1868
[ffffffwwwwwwwwwwwwwwfff	chr6:11222352-11222626(-)$1	274	114	138	22.1982
gggggg[attttttttttta]ggg	chr1:155103208-155103509(+)$1	301	257	281	21.1911
d!!ddddvvvvvvvvvvvvvdddd	chr1:146684072-146684353(-)$1	281	24	48	22.8725
::::cccwwwwwwwwwwwwwwccc	chr9:139698266-139698550(+)$1	284	80	104	19.4447
hhhhhhhwwwwwwwwwwwwwwhhh	chr4:184086212-184086476(+)$1	264	70	94	20.9656
g[a[cccvvvvvvvvvvvvvccc]	chr22:47310858-47311141(+)$1	283	41	65	24.2594
::eeeeevvvvvvvvvvvvveeee	chr6:2245022-2245266(-)$1	244	56	80	21.2814
eee[ccc^^^^^^^^^^^^^^^^^	chrX:131545511-131545817(-)$1	306	49	73	16.7753
e[cccyyyyyyyyyyyyyyyyccc	chr4:140630515-140630829(+)$1	314	191	215	20.3826
ccc[cccvvvvvvvvvvvvvccc]	chr6:142757379-142757640(+)$1	261	136	160	24.1824
IIeeeeevvvvvvvvvvvvveeee	chr8:144678717-144679001(-)$1	284	80	104	20.7236
cc[a[cccuuuuuuuuuuuuccc]	chr12:121340922-121341218(-)$1	296	112	136	22.9495
ffff[cccuuuuuuuuuuuucccf	chr19:35538915-35539175(+)$1	260	149	173	22.2929
Jddddyyyyyyyyyyyyyyyyddd	chr10:70095831-70096102(+)$1	271	115	139	18.1924
""eeeeeuuuuuuuuuuuueeeee	chr7:47406679-47406973(-)$1	294	24	48	21.5282

#otherMatches

#Seq PSSM
UGAAGUaaaaaaaaaaaaaaaaaa	chr2:216277450-216277690(-)$1	240	179	203	16.8437
GGGUGGCCAUAGAAAAUGAAGGGC	chr20:34229913-34230170(-)$1	257	131	155	19.6179
caaCCUUGGAUGUGUAGUGUGUGA	chr3:176892365-176892678(-)$1	313	58	82	19.7199
uauuugugauaaugggaacggcau	chr11:102053893-102054154(+)$1	261	72	96	23.6238
AGAGCCUAGAGGACAGAGCAGGAG	chr2:134899302-134899550(+)$1	248	67	91	22.1677
AUGAGCAUUCUUUUUUAUUUGUCU	chr20:34224061-34224312(-)$1	251	23	47	21.3221
aagugcuauaaagagauauaaaaa	chr17:44228681-44228953(-)$1	272	58	82	16.7755
ggaucaggagagaugggaacugag	chr6:2272913-2273184(+)$1	271	182	206	21.6704
ccucuuaguagaagaaaaauaaua	chr7:138205879-138206149(+)$1	270	48	72	17.8079
GUAGUAAGGAUAGGAAAGAGGGUA	chr14:39737919-39738180(+)$1	261	34	58	17.4233
GCCCUGCGAUAUAUAUCAGGCAGG	chr17:77966395-77966674(-)$1	279	179	203	20.3246
GGGAAGUAUAUGAACAAAAGGCUA	chr8:13105990-13106212(-)$1	222	162	186	23.7388
GCGGUUAAUCAuuaauaucauaaa	chr17:55513839-55514172(+)$1	333	265	289	23.9427
gagccaggagugaggguagaggga	chr17:80519179-80519565(+)$1	386	96	120	16.6645
GGCCAGACACAUGCCUGACAGUUG	chr6:155583430-155583744(-)$1	314	214	238	21.9705
caaggaaguggcuucagaggacgu	chr12:123464008-123464284(+)$1	276	120	144	19.9044
GAGAUGAAAAGGAAAAGAAAUCAU	chr13:98892605-98892890(+)$1	285	253	277	22.8042
UUUUAUUCAUUUCAUUCAUUUGGG	chr17:57697610-57697877(+)$1	267	220	244	19.7520
aacaguaacaaaaugaauaaacug	chr11:43708885-43709155(+)$1	270	50	74	20.9629
AGUGUAUACUUAAAUGUGAUGUGU	chr20:42837294-42837615(-)$1	321	54	78	19.5254
ggucaggaauucgagaccagccug	chr1:893811-894102(-)$1	291	241	265	23.4068
GGCAGAUCUUAACGUUUCAGUGCA	chr7:104939234-104939561(-)$1	327	65	89	19.8562
GGAACGUUCAGAAAGAUAAUAGGU	chr8:128223959-128224216(-)$1	257	43	67	22.9598
uugagccauuagucaacaaaggcu	chr20:8428341-8428599(+)$1	258	39	63	22.5489
aguaugcagagguuugaaggcaug	chr10:77610451-77610783(+)$1	332	191	215	19.7276
acaaaacuaggugaguaugguguu	chr4:107120334-107120610(-)$1	276	110	134	21.3189
uggucccauuccaaccacuaggga	chrX:20246463-20246746(-)$1	283	185	209	23.4068
gauccucauaaggcaaucagagag	chr10:77416885-77417180(+)$1	295	216	240	22.5643
GAAAGGAGAGGGGGUUGGGGAUUC	chr8:97570377-97570674(+)$1	297	89	113	22.2648
AGGAGGUGGAGGAAAGAUGUGACC	chr9:139698080-139698389(+)$1	309	266	290	19.4447
agauuaugaugaaaaggcagugaa	chr4:152172120-152172397(-)$1	277	201	225	21.6029
ggaaaguugguguggagagagcua	chrX:77374133-77374432(+)$1	299	118	142	19.9641
GUAAUAAAUAACCAAGAAACAUUA	chrX:20205772-20206026(-)$1	254	190	214	22.8180
AAAUCUAAAUAAAAAUAAACUUAG	chr2:63141649-63141982(+)$1	333	275	299	22.1180
gguaaaguuuuauggaggguggca	chr9:116824096-116824345(-)$1	249	47	71	20.1265
ACCCUGAAGAGUGGUCAGAAUUCA	chr17:80419989-80420273(+)$1	284	109	133	19.7301
gagcuugacaaucaUGAUUAUAGG	chr15:67384897-67385158(+)$1	261	18	42	23.0820
GCCUUUCAAGAGAUAAUUAAAGGU	chr9:104167642-104167905(+)$1	263	95	119	16.8404
GGUUUGUAGGUUCAGUGCUACUGC	chr16:89497816-89498092(-)$1	276	130	154	19.5830
CAGGUUCUUAUUAUGACAUUGAAC	chr5:95270617-95270921(-)$1	304	199	223	22.7708
UGGAUGCAAAAGAAAAGAAAGCAC	chr16:52573530-52573852(-)$1	322	20	44	23.6508
CUCCCCAGACGACGAUGUAAAUAA	chr11:16760354-16760625(+)$1	271	18	42	17.0083
UCAUCAUGAGAAACUGGAGAGUGC	chr16:31198432-31198683(+)$1	251	17	41	24.1868
AGGGUUGCAUCCUAUUUACAUCAA	chr6:11222352-11222626(-)$1	274	114	138	22.1982
AUUUAUGGGUAGAAGAGAAUGAUA	chr1:155103208-155103509(+)$1	301	257	281	21.1911
UGAGUUAAGCAAAGUACAUAUGAC	chr1:146684072-146684353(-)$1	281	24	48	22.8725
AGGAGGUGGAGGAAAGAUGUGACC	chr9:139698266-139698550(+)$1	284	80	104	19.4447
CAAAUCAUGGUUGGGCAAAGUUGG	chr4:184086212-184086476(+)$1	264	70	94	20.9656
ggcauucagagagggcagcagaag	chr22:47310858-47311141(+)$1	283	41	65	24.2594
GUGCCGGAAAGGGAAAAGAACCGG	chr6:2245022-2245266(-)$1	244	56	80	21.2814
uacacagcgauaagagcuacgaua	chrX:131545511-131545817(-)$1	306	49	73	16.7753
gguucugcgaaauauauaugugaa	chr4:140630515-140630829(+)$1	314	191	215	20.3826
ccgagacgucuaguaaagugguca	chr6:142757379-142757640(+)$1	261	136	160	24.1824
AGGCUUUAAGUGGAAGGAAGAAGG	chr8:144678717-144679001(-)$1	284	80	104	20.7236
CCGGGAGUGAGGGGAGGAAAACUG	chr12:121340922-121341218(-)$1	296	112	136	22.9495
uCUGAUGAUUUauaaagcauuuau	chr19:35538915-35539175(+)$1	260	149	173	22.2929
GUGAGGGAAAGGUUUGAAAUACUC	chr10:70095831-70096102(+)$1	271	115	139	18.1924
GGGACCAGAGAGCUGGAGGUGGUC	chr7:47406679-47406973(-)$1	294	24	48	21.5282

#DB
(((((((.................	chr2:216277450-216277690(-)$1	1	179	203	16.8437
)).((.((............)).)	chr20:34229913-34230170(-)$1	1	131	155	19.6179
((.((((................)	chr3:176892365-176892678(-)$1	1	58	82	19.7199
(((.(((.............))).	chr11:102053893-102054154(+)$1	1	72	96	23.6238
(((((((.............)).)	chr2:134899302-134899550(+)$1	1	67	91	22.1677
..(((((............)).))	chr20:34224061-34224312(-)$1	1	23	47	21.3221
.((.(((.................	chr17:44228681-44228953(-)$1	1	58	82	16.7755
...((((............)))).	chr6:2272913-2273184(+)$1	1	182	206	21.6704
.((((((...............))	chr7:138205879-138206149(+)$1	1	48	72	17.8079
(((.(...............).))	chr14:39737919-39738180(+)$1	1	34	58	17.4233
.((((((............)))))	chr17:77966395-77966674(-)$1	1	179	203	20.3246
((..(((.............))).	chr8:13105990-13106212(-)$1	1	162	186	23.7388
((..(((.............))).	chr17:55513839-55514172(+)$1	1	265	289	23.9427
...((((.................	chr17:80519179-80519565(+)$1	1	96	120	16.6645
((((.(((............))).	chr6:155583430-155583744(-)$1	1	214	238	21.9705
(..(((.((...........)).)	chr12:123464008-123464284(+)$1	1	120	144	19.9044
.((((((.............))))	chr13:98892605-98892890(+)$1	1	253	277	22.8042
(((((((((...........))))	chr17:57697610-57697877(+)$1	1	220	244	19.7520
.(((((..............))))	chr11:43708885-43709155(+)$1	1	50	74	20.9629
(..((((((...........))))	chr20:42837294-42837615(-)$1	1	54	78	19.5254
(((((((.............))))	chr1:893811-894102(-)$1	1	241	265	23.4068
((((................))).	chr7:104939234-104939561(-)$1	1	65	89	19.8562
(((((.(.............).))	chr8:128223959-128224216(-)$1	1	43	67	22.9598
((.((((.............))))	chr20:8428341-8428599(+)$1	1	39	63	22.5489
..(((((............)))))	chr10:77610451-77610783(+)$1	1	191	215	19.7276
.((((((..............)))	chr4:107120334-107120610(-)$1	1	110	134	21.3189
(((((((.............))))	chrX:20246463-20246746(-)$1	1	185	209	23.4068
..(((((..............)))	chr10:77416885-77417180(+)$1	1	216	240	22.5643
(..((((..............)))	chr8:97570377-97570674(+)$1	1	89	113	22.2648
....(((..............)))	chr9:139698080-139698389(+)$1	1	266	290	19.4447
(..((((............)))).	chr4:152172120-152172397(-)$1	1	201	225	21.6029
(((.((((...........)))).	chrX:77374133-77374432(+)$1	1	118	142	19.9641
(((((((..............)))	chrX:20205772-20206026(-)$1	1	190	214	22.8180
.(((((((............))))	chr2:63141649-63141982(+)$1	1	275	299	22.1180
((.((.(((...........))).	chr9:116824096-116824345(-)$1	1	47	71	20.1265
((((((((............))))	chr17:80419989-80420273(+)$1	1	109	133	19.7301
..(((((.............))))	chr15:67384897-67385158(+)$1	1	18	42	23.0820
(((((((.................	chr9:104167642-104167905(+)$1	1	95	119	16.8404
(((((((((...........))))	chr16:89497816-89498092(-)$1	1	130	154	19.5830
.((((((.............))))	chr5:95270617-95270921(-)$1	1	199	223	22.7708
(((.(((.............))))	chr16:52573530-52573852(-)$1	1	20	44	23.6508
(((((((.................	chr11:16760354-16760625(+)$1	1	18	42	17.0083
.((((((.............))).	chr16:31198432-31198683(+)$1	1	17	41	24.1868
.((((((..............)))	chr6:11222352-11222626(-)$1	1	114	138	22.1982
((((((.(...........).)))	chr1:155103208-155103509(+)$1	1	257	281	21.1911
(..((((.............))))	chr1:146684072-146684353(-)$1	1	24	48	22.8725
....(((..............)))	chr9:139698266-139698550(+)$1	1	80	104	19.4447
(((((((..............)))	chr4:184086212-184086476(+)$1	1	70	94	20.9656
(.(.(((.............))).	chr22:47310858-47311141(+)$1	1	41	65	24.2594
..(((((.............))))	chr6:2245022-2245266(-)$1	1	56	80	21.2814
(((.(((.................	chrX:131545511-131545817(-)$1	1	49	73	16.7753
(.(((................)))	chr4:140630515-140630829(+)$1	1	191	215	20.3826
(((.(((.............))).	chr6:142757379-142757640(+)$1	1	136	160	24.1824
))(((((.............))))	chr8:144678717-144679001(-)$1	1	80	104	20.7236
((.(.(((............))).	chr12:121340922-121341218(-)$1	1	112	136	22.9495
((((.(((............))))	chr19:35538915-35539175(+)$1	1	149	173	22.2929
(((((................)))	chr10:70095831-70096102(+)$1	1	115	139	18.1924
..(((((............)))))	chr7:47406679-47406973(-)$1	1	24	48	21.5282

#PSSM
g : 0.12	: : 0.12	c : 0.10	" : 0.10	f : 0.08	[ : 0.08	d : 0.06	h : 0.06	e : 0.06	b : 0.05	i : 0.03	# : 0.01	! : 0.01	= : 0.01	I : 0.01	J : 0.01	
f : 0.15	c : 0.13	g : 0.10	! : 0.10	h : 0.06	" : 0.06	e : 0.06	: : 0.06	d : 0.05	b : 0.05	i : 0.03	[ : 0.03	# : 0.01	= : 0.01	I : 0.01	
e : 0.17	c : 0.13	f : 0.13	! : 0.12	g : 0.10	[ : 0.06	: : 0.05	d : 0.03	b : 0.03	" : 0.03	i : 0.03	h : 0.03	= : 0.01	a : 0.01	
d : 0.13	[ : 0.13	f : 0.13	e : 0.13	c : 0.12	g : 0.10	b : 0.05	! : 0.03	i : 0.03	: : 0.03	h : 0.03	= : 0.01	a : 0.01	
c : 0.27	d : 0.15	e : 0.13	f : 0.12	g : 0.10	[ : 0.05	b : 0.03	i : 0.03	h : 0.03	a : 0.01	y : 0.01	= : 0.01	
c : 0.27	d : 0.15	f : 0.12	e : 0.12	g : 0.08	[ : 0.05	y : 0.05	b : 0.03	i : 0.03	h : 0.03	x : 0.01	= : 0.01	
c : 0.27	d : 0.15	f : 0.12	e : 0.10	g : 0.06	b : 0.05	y : 0.05	[ : 0.03	i : 0.03	h : 0.03	x : 0.01	w : 0.01	a : 0.01	= : 0.01	
v : 0.31	w : 0.15	^ : 0.10	u : 0.10	y : 0.06	c : 0.06	b : 0.03	x : 0.03	d : 0.03	i : 0.01	f : 0.01	g : 0.01	h : 0.01	a : 0.01	
v : 0.31	u : 0.20	w : 0.15	^ : 0.10	y : 0.06	x : 0.03	t : 0.03	b : 0.01	i : 0.01	f : 0.01	c : 0.01	d : 0.01	
v : 0.31	u : 0.20	w : 0.15	t : 0.12	^ : 0.10	y : 0.06	x : 0.03	
v : 0.31	u : 0.20	w : 0.15	t : 0.12	^ : 0.10	y : 0.06	x : 0.03	
v : 0.31	u : 0.20	w : 0.15	t : 0.12	^ : 0.10	y : 0.06	x : 0.03	
v : 0.31	u : 0.20	w : 0.15	t : 0.12	^ : 0.10	y : 0.06	x : 0.03	
v : 0.31	u : 0.20	w : 0.15	t : 0.12	^ : 0.10	y : 0.06	x : 0.03	
v : 0.31	u : 0.20	w : 0.15	t : 0.12	^ : 0.10	y : 0.06	x : 0.03	
v : 0.31	u : 0.20	w : 0.15	t : 0.12	^ : 0.10	y : 0.06	x : 0.03	
v : 0.31	u : 0.20	w : 0.15	t : 0.12	^ : 0.10	y : 0.06	x : 0.03	
v : 0.31	u : 0.20	w : 0.15	t : 0.12	^ : 0.10	y : 0.06	x : 0.03	
v : 0.31	u : 0.20	w : 0.15	t : 0.12	^ : 0.10	y : 0.06	x : 0.03	
v : 0.31	w : 0.15	^ : 0.10	u : 0.10	t : 0.08	y : 0.06	d : 0.05	x : 0.03	e : 0.03	b : 0.01	f : 0.01	a : 0.01	
c : 0.20	w : 0.13	^ : 0.10	d : 0.10	e : 0.10	b : 0.06	f : 0.06	y : 0.05	g : 0.05	a : 0.03	x : 0.01	i : 0.01	h : 0.01	] : 0.01	
c : 0.25	d : 0.13	e : 0.12	^ : 0.10	f : 0.10	g : 0.06	b : 0.05	] : 0.05	h : 0.03	y : 0.01	x : 0.01	i : 0.01	= : 0.01	
c : 0.27	d : 0.13	f : 0.13	e : 0.13	^ : 0.10	g : 0.06	] : 0.05	h : 0.03	y : 0.01	i : 0.01	= : 0.01	
] : 0.18	f : 0.15	e : 0.15	^ : 0.10	d : 0.10	c : 0.10	g : 0.06	h : 0.03	b : 0.01	4 : 0.01	2 : 0.01	i : 0.01	= : 0.01	

#score	1216.7855543290498
#seq	58
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_transcript_m2_run2.txt

#BEAR
fff[==========oooooo==========fff	chr14:105628713-105628975(-)$1	262	127	160	14.4470
###eeeee!!ccc[bbmmmmbb]ccc]eeeeec	chr2:234197395-234197627(+)$1	232	67	100	10.3211
ddd!!eeeee[cccnnnnnccceeeeedddd]b	chr8:56986294-56986515(-)$1	221	52	85	10.7227
ccc[bb!!a!!cccnnnnnccc22a22bb]ccc	chr16:1413724-1413989(-)$1	265	175	208	10.8960
:ggggggg[eeeeeooooooeeeeegggggggB	chr12:6619393-6619597(+)$1	204	78	111	10.9175
dddeeeee[ccccccmmmmccc]ccc]eeeee]	chr1:109642875-109643096(+)$1	221	179	212	10.6799
cc[ccc[a[arrrrrrrrra]a]ccc]ccc]ee	chr12:76462397-76462650(-)$1	253	117	150	10.0304
ccc[a!!bb[a[aooooooa]a]bb22a]cccc	chr13:26828211-26828521(+)$1	310	150	183	13.1126
[dddd!!ccc!!bb[allla]bb]cccdddd]d	chr7:5569687-5569984(-)$1	297	104	137	10.7240
ff[eeeee[a!!bboooooobb]aeeeeeffff	chr22:19811048-19811338(-)$1	290	221	254	15.7268
d[a[dddd!!cccooooooccc333dddd]a]d	chr7:932848-933085(+)$1	237	57	90	14.7434
!!eeeee####cccnnnnnccc4444eeeee22	chr2:29150775-29151016(+)$1	241	189	222	12.4397
cceeeee!!eeeeeooooooeeeee22eeeee]	chr20:17943419-17943675(-)$1	256	84	117	12.8119
d"""dddd"""cccooooooccc333dddd22d	chr6:31508840-31509044(-)$1	204	58	91	15.5440
fff[dddd[cccoooooocccddddffffffff	chr3:39449865-39450069(+)$1	204	96	129	11.0158
$$$$a[a[a[a[bboooooobb]a]a]a]a666	chr16:23478554-23478842(-)$1	288	115	148	13.4569
[ffffff[ffffffooooooffffff]ffffff	chr3:129113534-129113827(-)$1	293	198	231	11.7475
hhhhhhh[ccc[bboooooobbccc]hhhhhhh	chr6:520831-521118(-)$1	287	33	66	11.9683
!bb[a[cccbb[bboooooobb]bb]ccc]a]b	chr8:96146460-96146745(+)$1	285	60	93	13.6532
aa[ccc[a####bboooooobb333a]ccc]a]	chr16:88586267-88586532(+)$1	265	47	80	16.1279
dddddddd[eeeeeooooooeeeeedddd333d	chr17:19091281-19091511(+)$1	230	123	156	12.0089
ggggg[bb!!ccc[aooooooa]ccc22bb22g	chr7:1492362-1492636(-)$1	274	146	179	12.6919
gggggg[gggggggooooooggggggg]ggggg	chr11:638026-638306(+)$1	280	171	204	13.5818
fff[dddd[cccoooooocccddddffffffff	chr3:39449857-39450065(+)$1	208	104	137	11.0158
ccccc"""ffffffooooooffffffccc]ccc	chr6:161574463-161574706(-)$1	243	177	210	12.2104
gggggg[a[ddddooooooddddaggggggg]b	chr19:2336609-2336963(+)$1	354	60	93	12.2176
ggg####dddd[bboooooobbdddd22ggggg	chr1:173835966-173836178(-)$1	212	5	38	13.4067
iii[dddd####bboooooobb4444dddd]ii	chr19:5052293-5052579(+)$1	286	163	196	15.8270
ccc[eeeee"""cccmmmmccc333eeeee]cc	chr11:65210930-65211187(+)$1	257	11	44	11.9894
fffff!!gggggggooooooggggggg]fffff	chr19:55544678-55544935(+)$1	257	147	180	12.9575
eee[eeeee!!a[annnnna]a22eeeee]eee	chr18:47340655-47340908(+)$1	253	111	144	11.4165
fffff[dddd[cccoooooocccddddffffff	chr3:39449806-39450020(+)$1	214	153	186	12.9869
ccc[dddd[cccbboooooobb]ccc]dddd]c	chr17:76123830-76124070(-)$1	240	179	212	15.5163
bb"""ccc!!ddddoooooodddd333ccc444	chr19:1415423-1415698(+)$1	275	9	42	13.4309
ee[bb[bb"""ccclllcccbb]bb]eeeee]d	chr14:105243730-105243987(-)$1	257	107	140	10.5087
gggggccc!!a[bboooooobb]a]ccc22ggg	chr5:109035336-109035590(-)$1	254	66	99	15.0895
bbeeeee[ccc[bboooooobbccceeeee:HH	chr13:92000161-92000452(+)$1	291	12	45	12.0202
[ccc####ccc[bboooooobb]ccc22ccc]b	chr1:173833405-173833620(-)$1	215	56	89	14.6350
deeeee$$$$$cccooooooccc4444eeeee]	chr1:173835343-173835602(-)$1	259	120	153	14.4636
ff[eeeee####ccclllccc333eeeee333f	chr3:160232787-160232994(-)$1	207	48	81	12.4314
bb!!eeeee!!cccooooooccc22eeeee22b	chr19:944209-944535(+)$1	326	233	266	15.0655
ggggdddd[a[ccclllccc]a]dddd]ggggg	chr10:80980726-80980988(+)$1	262	110	143	10.7813
d[dddd[ccc[cccnnnnnccc]ccc]dddd]d	chr19:34882621-34882874(+)$1	253	77	110	11.3653
$$$eeeee"""cccooooooccc333eeeeeee	chr16:71792201-71792486(-)$1	285	127	160	15.4942
&&iiiiiiiii[bboooooobb22iiiiiiiii	chr16:12354775-12355030(+)$1	255	199	232	13.3978
bb[ffffff!!cccooooooccc22ffffff]b	chr19:942522-942769(+)$1	247	17	50	13.7107
gggeeeee"""cccooooooccc22eeeee888	chr19:2270511-2270780(+)$1	269	12	45	14.4608
b!!ccc"""bb[bboooooobbbb4444ccc]b	chr19:49605362-49605605(+)$1	243	173	206	14.0630
fff!!dddd!!cccooooooccc4444ddddff	chr2:101889367-101889613(-)$1	246	50	83	14.9782
ee!!eeeee[a[bboooooobb]aeeeee22ee	chr1:173833910-173834139(-)$1	229	37	70	15.1852
ddd####eeeee[aooooooaeeeee333dddd	chr11:62620392-62620608(-)$1	216	25	58	12.1183
dd!!eeeee!!cccmmmmccc]eeeeedddd]a	chr16:2015156-2015400(+)$1	244	154	187	10.3691
:ddddffffff[bboooooobb]ffffff]ddd	chr1:153913446-153913777(-)$1	331	292	325	11.6975

#otherMatches

#Seq PSSM
CUUUGGGGUGCCCUGGACCUGGGGUACCCUGGG	chr14:105628713-105628975(-)$1	262	127	160	14.4470
UCUGUGUUCCUCCGUGAGCUCAGGGAAGACACU	chr2:234197395-234197627(+)$1	232	67	100	10.3211
AGCUGGCGAUGAGGAGGUACCUAUUGUGUUGAG	chr8:56986294-56986515(-)$1	221	52	85	10.7227
CAGGUGAGCAGUGGGAAGACCAAAGAAUGGCUG	chr16:1413724-1413989(-)$1	265	175	208	10.8960
UGGUGGGCGAUACAGAGUUAUGUGUGUUCACUG	chr12:6619393-6619597(+)$1	204	78	111	10.9175
CUCCUGCGAAGCCCCCUCGGGGCGCUGUGCAGC	chr1:109642875-109643096(+)$1	221	179	212	10.6799
guguguguguguguguguAAGGGGCGGGUAGGU	chr12:76462397-76462650(-)$1	253	117	150	10.0304
GGCGUGAGUGCGCGUGUGAGAGGACGAGAGCCC	chr13:26828211-26828521(+)$1	310	150	183	13.1126
GGCUCUUGCCAAUGGGGAUCGCAGGGUGGGCGC	chr7:5569687-5569984(-)$1	297	104	137	10.7240
CAUCCUGGACUCGGUGCUUUCCUGCUAGGUGGA	chr22:19811048-19811338(-)$1	290	221	254	15.7268
gguggugugugcaggugaguguugggcgcgggc	chr7:932848-933085(+)$1	237	57	90	14.7434
UAGUCAUUAUAACUGCCUAAGUGUUUAUGAUCU	chr2:29150775-29151016(+)$1	241	189	222	12.4397
UUGUGAAAUGAUGAUUCAGUUUAUCCAUUCGCU	chr20:17943419-17943675(-)$1	256	84	117	12.8119
GGAGGCUGAGAGCUAUGGGAGGUGGACGGCGGC	chr6:31508840-31509044(-)$1	204	58	91	15.5440
AGGAUUUUCGCUAACACCAGUAGAGCUUGCCUC	chr3:39449865-39450069(+)$1	204	96	129	11.0158
uguguguguguguguguguUCGGGGAGAGGGUG	chr16:23478554-23478842(-)$1	288	115	148	13.4569
GGGGCUAGCUCUGUGUGUGUGCAGGGGUAGUCU	chr3:129113534-129113827(-)$1	293	198	231	11.7475
CGCUCGGUGGGUGGUGGUUUUCCUCUCCGAGUG	chr6:520831-521118(-)$1	287	33	66	11.9683
aggacgccgccgccgccgcggggggacgggggc	chr8:96146460-96146745(+)$1	285	60	93	13.6532
acggcuggguagauggauagauggaugagugga	chr16:88586267-88586532(+)$1	265	47	80	16.1279
cacgaggaagagagguagcguuuucuccugagc	chr17:19091281-19091511(+)$1	230	123	156	12.0089
GGGUGGUGCAGCCCAGUUGAAUAGGCCUCAAAC	chr7:1492362-1492636(-)$1	274	146	179	12.6919
ACCAGGUCUGGCCCUCGAGUGGGUCGGCCUUGG	chr11:638026-638306(+)$1	280	171	204	13.5818
AGGAUUUUCGCUAACACCAGUAGAGCUUGCCUC	chr3:39449857-39450065(+)$1	208	104	137	11.0158
CCUGAUUCACUGUGAGGGCACACGGUUCACGGA	chr6:161574463-161574706(-)$1	243	177	210	12.2104
caugugucugcuugagugugagugugcaugugu	chr19:2336609-2336963(+)$1	354	60	93	12.2176
CUGGGUGCAGAUGCAGUGUGGCUCUGGAUAGCA	chr1:173835966-173836178(-)$1	212	5	38	13.4067
UGGAAGGCAGAGCCUGGGGUGGAUGAGUCUGUC	chr19:5052293-5052579(+)$1	286	163	196	15.8270
GUGUUUAUUUUACACUGUUGUGAUUGGUAGUUA	chr11:65210930-65211187(+)$1	257	11	44	11.9894
GGCUCGUUCGUGUUGUGUUAGACACGGUGGGCU	chr19:55544678-55544935(+)$1	257	147	180	12.9575
UCUGGGAACCAGGUGAUGGAGUAUGUUCUGAGA	chr18:47340655-47340908(+)$1	253	111	144	11.4165
GCAGGAUUUUCGCUAACACCAGUAGAGCUUGCC	chr3:39449806-39450020(+)$1	214	153	186	12.9869
GGCACCCCUGCAAGGAGCUGCUCUGUCGGGGCG	chr17:76123830-76124070(-)$1	240	179	212	15.5163
CCAAAGGAUUGUGUAAAUGAGCAUUUUUCCGGU	chr19:1415423-1415698(+)$1	275	9	42	13.4309
GCCCCAGGUGUGGCUGUGCCCCAGGUGUGCGUG	chr14:105243730-105243987(-)$1	257	107	140	10.5087
cgaucuggcugcgaaaucugucaccccauugau	chr5:109035336-109035590(-)$1	254	66	99	15.0895
GCGGCCGGCCAGCCGAAGAUGGUGGCGGCUACU	chr13:92000161-92000452(+)$1	291	12	45	12.0202
CUGCCAAAUGAAAUAUAAUGAUAUCACUGUAAA	chr1:173833405-173833620(-)$1	215	56	89	14.6350
GCAGAUUUAAUCAUGAAGAGAUGUACUAUCUGU	chr1:173835343-173835602(-)$1	259	120	153	14.4636
UUAUAAGUUUAGUGUUUUAUAGGUACUUAAUAG	chr3:160232787-160232994(-)$1	207	48	81	12.4314
GCCACGGCCUCAGCCCCGUUGCUUCGGUCGAUG	chr19:944209-944535(+)$1	326	233	266	15.0655
UGCAUGCCUGUGUGUGUCGCCCUGGCGCUGCAU	chr10:80980726-80980988(+)$1	262	110	143	10.7813
GGUGGGAUCUGGUAUUAAUUAUGAGAAUCUGGU	chr19:34882621-34882874(+)$1	253	77	110	11.3653
CCAUCGGCUAAGUGUCUUGUCACAAUGCUGACA	chr16:71792201-71792486(-)$1	285	127	160	15.4942
CCGGCUGGAGUGAGUGGUUCCUGAGCUCCAGUC	chr16:12354775-12355030(+)$1	255	199	232	13.3978
UAAUCUGGCCAUUGAAGGCCCAAGCGCCGGGAU	chr19:942522-942769(+)$1	247	17	50	13.7107
GGUGGCGCACUCCGACAGCCCGGCAGCGCCCUG	chr19:2270511-2270780(+)$1	269	12	45	14.4608
GUCGCCCCCGUAGCCUCCCCGCACCCAUGGCCC	chr19:49605362-49605605(+)$1	243	173	206	14.0630
UUUUAGGGAUCCUGAACACACAGCCUUUCCCAG	chr2:101889367-101889613(-)$1	246	50	83	14.9782
uuacaggcgugagccaccaugccccgccUCAAG	chr1:173833910-173834139(-)$1	229	37	70	15.1852
ACUAGGUGUCUGUGUUCACUCCAGGCUGAAGUU	chr11:62620392-62620608(-)$1	216	25	58	12.1183
CGCUGCCGCCUCCCCCCCGGGUGCGGUCGCUCG	chr16:2015156-2015400(+)$1	244	154	187	10.3691
UGAGCUGGCUAUCACACUGCUGCUGGCUGUGCU	chr1:153913446-153913777(-)$1	331	292	325	11.6975

#DB
(((.((((((((((......)))))))))))))	chr14:105628713-105628975(-)$1	1	127	160	14.4470
...(((((..(((.((....)).))).))))))	chr2:234197395-234197627(+)$1	1	67	100	10.3211
(((..(((((.(((.....)))))))))))).)	chr8:56986294-56986515(-)$1	1	52	85	10.7227
(((.((..(..(((.....)))..)..)).)))	chr16:1413724-1413989(-)$1	1	175	208	10.8960
.(((((((.(((((......)))))))))))))	chr12:6619393-6619597(+)$1	1	78	111	10.9175
((((((((.((((((....))).))).))))).	chr1:109642875-109643096(+)$1	1	179	212	10.6799
((.(((.(.(.........).).))).))).))	chr12:76462397-76462650(-)$1	1	117	150	10.0304
(((.(..((.(.(......).).))..).))))	chr13:26828211-26828521(+)$1	1	150	183	13.1126
.((((..(((..((.(...).)).))))))).)	chr7:5569687-5569984(-)$1	1	104	137	10.7240
((.(((((.(..((......)).))))))))))	chr22:19811048-19811338(-)$1	1	221	254	15.7268
(.(.((((..(((......)))...)))).).)	chr7:932848-933085(+)$1	1	57	90	14.7434
..(((((....(((.....)))....)))))..	chr2:29150775-29151016(+)$1	1	189	222	12.4397
(((((((..(((((......)))))..))))).	chr20:17943419-17943675(-)$1	1	84	117	12.8119
(...((((...(((......)))...))))..)	chr6:31508840-31509044(-)$1	1	58	91	15.5440
(((.((((.(((......)))))))))))))((	chr3:39449865-39450069(+)$1	1	96	129	11.0158
....(.(.(.(.((......)).).).).)...	chr16:23478554-23478842(-)$1	1	115	148	13.4569
.((((((.((((((......)))))).))))))	chr3:129113534-129113827(-)$1	1	198	231	11.7475
(((((((.(((.((......))))).)))))))	chr6:520831-521118(-)$1	1	33	66	11.9683
.((.(.(((((.((......)).)).))).).)	chr8:96146460-96146745(+)$1	1	60	93	13.6532
((.(((.(....((......))...).))).).	chr16:88586267-88586532(+)$1	1	47	80	16.1279
((((((((.(((((......)))))))))...)	chr17:19091281-19091511(+)$1	1	123	156	12.0089
(((((.((..(((.(......).)))..))..)	chr7:1492362-1492636(-)$1	1	146	179	12.6919
((((((.(((((((......))))))).)))))	chr11:638026-638306(+)$1	1	171	204	13.5818
(((.((((.(((......)))))))))))))((	chr3:39449857-39450065(+)$1	1	104	137	11.0158
(((((...((((((......))))))))).)))	chr6:161574463-161574706(-)$1	1	177	210	12.2104
((((((.(.((((......)))))))))))).)	chr19:2336609-2336963(+)$1	1	60	93	12.2176
(((....((((.((......))))))..)))))	chr1:173835966-173836178(-)$1	1	5	38	13.4067
(((.((((....((......))....)))).))	chr19:5052293-5052579(+)$1	1	163	196	15.8270
(((.(((((...(((....)))...))))).))	chr11:65210930-65211187(+)$1	1	11	44	11.9894
(((((..(((((((......))))))).)))))	chr19:55544678-55544935(+)$1	1	147	180	12.9575
(((.(((((..(.(.....).)..))))).)))	chr18:47340655-47340908(+)$1	1	111	144	11.4165
(((((.((((.(((......)))))))))))))	chr3:39449806-39450020(+)$1	1	153	186	12.9869
(((.((((.(((((......)).))).)))).)	chr17:76123830-76124070(-)$1	1	179	212	15.5163
((...(((..((((......))))...)))...	chr19:1415423-1415698(+)$1	1	9	42	13.4309
((.((.((...(((...))))).)).))))).)	chr14:105243730-105243987(-)$1	1	107	140	10.5087
((((((((..(.((......)).).)))..)))	chr5:109035336-109035590(-)$1	1	66	99	15.0895
))(((((.(((.((......)))))))))).((	chr13:92000161-92000452(+)$1	1	12	45	12.0202
.(((....(((.((......)).)))..))).)	chr1:173833405-173833620(-)$1	1	56	89	14.6350
((((((.....(((......)))....))))).	chr1:173835343-173835602(-)$1	1	120	153	14.4636
((.(((((....(((...)))...)))))...)	chr3:160232787-160232994(-)$1	1	48	81	12.4314
((..(((((..(((......)))..)))))..)	chr19:944209-944535(+)$1	1	233	266	15.0655
((((((((.(.(((...))).).)))).)))))	chr10:80980726-80980988(+)$1	1	110	143	10.7813
(.((((.(((.(((.....))).))).)))).)	chr19:34882621-34882874(+)$1	1	77	110	11.3653
...(((((...(((......)))...)))))))	chr16:71792201-71792486(-)$1	1	127	160	15.4942
..(((((((((.((......))..)))))))))	chr16:12354775-12355030(+)$1	1	199	232	13.3978
((.((((((..(((......)))..)))))).)	chr19:942522-942769(+)$1	1	17	50	13.7107
((((((((...(((......)))..)))))...	chr19:2270511-2270780(+)$1	1	12	45	14.4608
(..(((...((.((......))))....))).)	chr19:49605362-49605605(+)$1	1	173	206	14.0630
(((..((((..(((......)))....))))))	chr2:101889367-101889613(-)$1	1	50	83	14.9782
((..(((((.(.((......)).))))))..))	chr1:173833910-173834139(-)$1	1	37	70	15.1852
(((....(((((.(......))))))...))))	chr11:62620392-62620608(-)$1	1	25	58	12.1183
((..(((((..(((....))).))))))))).)	chr16:2015156-2015400(+)$1	1	154	187	10.3691
.((((((((((.((......)).)))))).)))	chr1:153913446-153913777(-)$1	1	292	325	11.6975

#PSSM
d : 0.16	f : 0.15	c : 0.13	g : 0.13	b : 0.09	[ : 0.05	e : 0.05	: : 0.03	! : 0.03	$ : 0.03	# : 0.01	h : 0.01	a : 0.01	i : 0.01	& : 0.01	
f : 0.16	c : 0.15	g : 0.15	d : 0.13	b : 0.09	e : 0.07	[ : 0.03	! : 0.03	$ : 0.03	# : 0.01	" : 0.01	h : 0.01	a : 0.01	i : 0.01	& : 0.01	
g : 0.15	f : 0.13	d : 0.13	c : 0.11	[ : 0.11	e : 0.09	! : 0.07	" : 0.03	$ : 0.03	i : 0.03	# : 0.01	a : 0.01	h : 0.01	b : 0.01	
[ : 0.20	e : 0.18	g : 0.11	! : 0.09	c : 0.09	d : 0.07	f : 0.07	" : 0.03	# : 0.03	$ : 0.01	h : 0.01	b : 0.01	i : 0.01	
e : 0.28	d : 0.20	g : 0.09	c : 0.07	f : 0.07	a : 0.05	# : 0.05	! : 0.03	b : 0.03	= : 0.01	h : 0.01	" : 0.01	i : 0.01	
e : 0.30	d : 0.18	c : 0.09	[ : 0.09	g : 0.05	! : 0.05	f : 0.05	# : 0.05	= : 0.01	b : 0.01	h : 0.01	" : 0.01	i : 0.01	
e : 0.28	d : 0.18	[ : 0.09	! : 0.07	f : 0.05	c : 0.05	# : 0.05	b : 0.03	" : 0.03	= : 0.01	g : 0.01	a : 0.01	h : 0.01	$ : 0.01	i : 0.01	
e : 0.24	d : 0.20	c : 0.09	[ : 0.07	g : 0.05	a : 0.05	b : 0.05	! : 0.03	# : 0.03	" : 0.03	f : 0.03	= : 0.01	$ : 0.01	i : 0.01	
[ : 0.18	e : 0.13	! : 0.11	c : 0.11	" : 0.09	# : 0.07	f : 0.07	d : 0.05	a : 0.03	g : 0.03	= : 0.01	b : 0.01	$ : 0.01	i : 0.01	
! : 0.20	c : 0.16	e : 0.09	" : 0.09	# : 0.07	a : 0.05	[ : 0.05	f : 0.05	d : 0.05	b : 0.03	g : 0.03	= : 0.01	$ : 0.01	i : 0.01	
c : 0.18	! : 0.15	" : 0.09	[ : 0.07	e : 0.07	a : 0.07	# : 0.07	f : 0.05	d : 0.05	b : 0.03	g : 0.03	= : 0.01	r : 0.01	$ : 0.01	i : 0.01	
c : 0.41	[ : 0.22	e : 0.07	# : 0.05	! : 0.03	f : 0.03	g : 0.03	d : 0.03	= : 0.01	r : 0.01	" : 0.01	a : 0.01	
c : 0.39	b : 0.30	e : 0.05	o : 0.03	f : 0.03	g : 0.03	d : 0.03	[ : 0.03	= : 0.01	r : 0.01	a : 0.01	
c : 0.33	b : 0.30	o : 0.09	e : 0.05	[ : 0.03	f : 0.03	g : 0.03	a : 0.03	= : 0.01	r : 0.01	d : 0.01	
o : 0.71	n : 0.09	c : 0.05	l : 0.03	b : 0.01	r : 0.01	[ : 0.01	a : 0.01	m : 0.01	
o : 0.73	n : 0.09	m : 0.05	l : 0.05	b : 0.01	r : 0.01	a : 0.01	
o : 0.73	n : 0.09	m : 0.07	l : 0.07	r : 0.01	
o : 0.73	n : 0.09	m : 0.07	l : 0.03	c : 0.03	r : 0.01	
o : 0.69	c : 0.11	n : 0.09	m : 0.05	r : 0.01	l : 0.01	
o : 0.64	c : 0.24	a : 0.07	m : 0.01	d : 0.01	
c : 0.35	b : 0.32	] : 0.09	e : 0.05	f : 0.03	g : 0.03	d : 0.03	= : 0.01	o : 0.01	a : 0.01	
b : 0.33	c : 0.28	a : 0.09	e : 0.07	d : 0.07	f : 0.03	g : 0.03	= : 0.01	3 : 0.01	] : 0.01	
] : 0.30	c : 0.18	e : 0.11	d : 0.09	3 : 0.07	2 : 0.05	b : 0.03	4 : 0.03	f : 0.03	g : 0.03	= : 0.01	
c : 0.16	e : 0.11	2 : 0.11	3 : 0.11	d : 0.11	a : 0.09	b : 0.07	4 : 0.07	f : 0.05	g : 0.03	= : 0.01	] : 0.01	
c : 0.18	e : 0.18	3 : 0.11	4 : 0.09	d : 0.09	b : 0.05	f : 0.05	g : 0.05	2 : 0.05	] : 0.03	= : 0.01	a : 0.01	i : 0.01	
e : 0.20	c : 0.16	f : 0.11	d : 0.09	4 : 0.09	g : 0.07	2 : 0.05	3 : 0.05	] : 0.05	a : 0.03	= : 0.01	i : 0.01	
e : 0.24	] : 0.15	2 : 0.11	d : 0.11	g : 0.07	c : 0.07	f : 0.07	4 : 0.05	3 : 0.03	= : 0.01	h : 0.01	i : 0.01	
e : 0.28	d : 0.18	c : 0.11	f : 0.11	2 : 0.05	] : 0.05	g : 0.03	a : 0.03	= : 0.01	b : 0.01	h : 0.01	i : 0.01	4 : 0.01	3 : 0.01	
e : 0.28	d : 0.18	c : 0.13	f : 0.13	g : 0.09	b : 0.03	] : 0.03	= : 0.01	h : 0.01	2 : 0.01	i : 0.01	3 : 0.01	
e : 0.20	d : 0.16	f : 0.13	] : 0.11	c : 0.11	g : 0.09	3 : 0.03	2 : 0.03	= : 0.01	a : 0.01	h : 0.01	b : 0.01	i : 0.01	
f : 0.15	e : 0.15	d : 0.15	g : 0.11	c : 0.09	] : 0.07	2 : 0.07	a : 0.03	3 : 0.03	6 : 0.01	h : 0.01	4 : 0.01	: : 0.01	i : 0.01	8 : 0.01	
] : 0.22	f : 0.15	e : 0.15	g : 0.09	c : 0.07	2 : 0.07	3 : 0.03	i : 0.03	d : 0.03	6 : 0.01	h : 0.01	a : 0.01	4 : 0.01	H : 0.01	8 : 0.01	
f : 0.16	d : 0.15	b : 0.13	c : 0.11	g : 0.09	] : 0.07	e : 0.07	i : 0.03	B : 0.01	2 : 0.01	6 : 0.01	h : 0.01	4 : 0.01	H : 0.01	8 : 0.01	a : 0.01	

#score	684.1821020833544
#seq	53
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_UTR_m3_run1.txt

#BEAR
dd[ggggggg[annnnna]ggggggg]ddd	chr17:25904417-25904709(+)$1	292	236	266	9.2043
[============mmmm============]	chr8:22885749-22886067(-)$1	318	134	164	13.5926
ee[cccgggggggmmmmggggggg]ccc]e	chr12:48180355-48180585(-)$1	230	77	107	12.7410
ee!!dddd[cccooooooccc]dddd]eee	chr2:183902916-183903169(-)$1	253	30	60	8.6358
ddd[ccc[eeeeemmmmeeeee]ccc4444	chr6:29600545-29600807(-)$1	262	125	155	10.5205
dddd[eeeee[bbmmmmbb]eeeeedddde	chr16:67200016-67200328(+)$1	312	94	124	9.4658
cc[ffffff[cccmmmmccc22ffffff33	chr1:1685967-1686238(-)$1	271	75	105	12.4798
##ccc!!ffffffmmmmffffff22ccc44	chr12:53564106-53564329(-)$1	223	175	205	11.7437
((ffffff!!cccmmmmccc22ffffff44	chr17:26911254-26911505(-)$1	251	137	167	10.7861
##dddd[ffffffmmmmffffff333dddd	chr17:40642416-40642674(+)$1	258	85	115	10.6600
dddd!!ggggggglllggggggg]dddd]b	chr9:131825421-131825659(+)$1	238	140	170	9.3088
cc!!iiiiiiiiimmmmiiiiiiiii]ccc	chr7:131071776-131072054(+)$1	278	152	182	13.2398
ee[ffffff[cccooooooccc]ffffffe	chr16:23848616-23848828(+)$1	212	95	125	9.1886
dd!!gggggggooooooggggggg333ddd	chr19:18547930-18548238(-)$1	308	149	179	10.5085
:ccc"""ffffffmmmmffffff333cccc	chr8:141828275-141828553(-)$1	278	97	127	10.8794
cccbb!!ffffffmmmmffffff22bb]cc	chr16:28845390-28845629(+)$1	239	188	218	10.1630
e"""iiiiiiiiimmmmiiiiiiiiieeee	chr6:31726511-31726732(+)$1	221	167	197	12.6975
eee[iiiiiiiiimmmmiiiiiiiii]eee	chr1:110168840-110169083(+)$1	243	152	182	12.4807
]ccciiiiiiiiimmmmiiiiiiiiiFFFF	chr17:48796951-48797176(+)$1	225	38	68	10.5847
##eeeee"""cccmmmmccc333eeeee55	chr2:171911546-171911783(-)$1	237	117	147	10.6184
eeeee"""eeeeemmmmeeeee333eeeee	chr3:9724761-9724967(+)$1	206	127	157	9.8146
ggggggg!!ddddllldddd]ggggggg]b	chr15:49574077-49574383(+)$1	306	125	155	8.8288
iiiiiiii!!cccmmmmccc22iiiiiiii	chr11:62303840-62304137(-)$1	297	148	178	13.3390
dd####ccc[cccnnnnnccc22ccc333d	chr12:54799553-54799786(-)$1	233	126	156	9.3669
##ccc!!ccccccmmmmccc]ccc22cccc	chr16:89812891-89813101(-)$1	210	95	125	12.5124
d####ccceeeeemmmmeeeee]ccc22dd	chr10:79569232-79569477(-)$1	245	106	136	9.9758
"""ccc[ccccccmmmmccc22cccccc44	chr19:40771027-40771271(-)$1	244	178	208	13.1019
"""eeeeea[cccmmmmccc]a]eeeee22	chr12:62892659-62892930(+)$1	271	193	223	11.6642
ffffff[ccc[bbmmmmbb]cccffffff]	chr3:47458554-47458786(-)$1	232	67	97	10.4765
ff!!dddd!!cccmmmmccc333dddd]ff	chr1:150297384-150297646(+)$1	262	150	180	11.5165
cc[gggggggcccmmmmccc22ggggggg2	chr2:176001078-176001303(-)$1	225	78	108	13.2908
ffffff[bb[cccmmmmcccbbffffffa]	chr17:76116631-76116850(-)$1	219	136	166	10.4437
"dddd[ccc!!bbmmmmbb]ccc]dddd22	chr6:13658916-13659169(-)$1	253	123	153	10.4308
{Accc[gggggggmmmmggggggg]cccbb	chr15:69728415-69728700(+)$1	285	54	84	10.4631
eeee[ffffffbbmmmmbb]ffffffeeee	chr18:33647116-33647415(-)$1	299	156	186	10.2315
ccc!!eeeee[bbmmmmbb]eeeee333cc	chr7:131083952-131084295(+)$1	343	46	76	10.9548
bb####ddddcccmmmmccc]dddd4444b	chr9:95009612-95009891(-)$1	279	121	151	10.5762
gggggg[bb[cccmmmmcccbbgggggggd	chr8:22885136-22885364(-)$1	228	23	53	11.7950
::ggggggg[cccmmmmccc22gggggggC	chr6:131931191-131931436(-)$1	245	45	75	10.6186
iiiii!!fffffflllffffff]iiiiiii	chr12:69082641-69082910(+)$1	269	209	239	9.7672
iiiiiigggggggmmmmggggggg333iii	chr1:22082947-22083178(-)$1	231	151	181	13.0969
ggggg]ggggggg4444iiiiiiiii]a44	chr19:18547532-18547852(-)$1	320	155	185	9.7618
hh[a[dddd[cccmmmmccc]dddda]hhh	chrX:153578302-153578506(-)$1	204	22	52	10.4016
"ccc[ccc!!cccmmmmccc333ccc]ccc	chr5:176959494-176959706(-)$1	212	87	117	13.3987
fffggggggg!!ammmma22ggggggg666	chr15:42129407-42129673(+)$1	266	69	99	10.3823
ee[ccc!!cccooooooccc22ccc]eeee	chr10:79767376-79767639(-)$1	263	6	36	9.7979
cc[a[cccffffffmmmmffffff]ccc]a	chr19:12811311-12811537(-)$1	226	24	54	9.8280
cc[bb!!ccc[bbmmmmbb]ccc22bb]cc	chr19:46329380-46329625(-)$1	245	12	42	10.6563
==========[bbmmmmbb]==========	chr9:123292273-123292519(-)$1	246	176	206	13.0665
::ggggggg!!bbmmmmbb4444ggggggg	chr5:176980289-176980548(-)$1	259	52	82	10.3022
==ccc[gggggggmmmmggggggg]ccc::	chr1:39781084-39781371(+)$1	287	234	264	11.1283

#otherMatches

#Seq PSSM
UGACAGGCCUGGGUACGUGGGGCCUGCCAC	chr17:25904417-25904709(+)$1	292	236	266	9.2043
UUGCAGCCGUAGUCUUGAUUGUGGCUGUGU	chr8:22885749-22886067(-)$1	318	134	164	13.5926
GCCACUUCUUGUGACCUCACAGGAUAGUCG	chr12:48180355-48180585(-)$1	230	77	107	12.7410
AGUGGAGCAGCCGGGGAAGGCGGCUCGUUg	chr2:183902916-183903169(-)$1	253	30	60	8.6358
CGGGCCUGGGGCCUUGAGGCCCGGGGAGAG	chr6:29600545-29600807(-)$1	262	125	155	10.5205
GGGAUGGCCAGUCAGCGGGGUGGUCUCCUG	chr16:67200016-67200328(+)$1	312	94	124	9.4658
GCCCUCUGACUCCUGCUGGACCUCAGGGAA	chr1:1685967-1686238(-)$1	271	75	105	12.4798
UCCUGCCGCCAGAAAGCUCUGGCAUCAGAC	chr12:53564106-53564329(-)$1	223	175	205	11.7437
UGAGGAGCAGGCUGCUCAGUGAGUUCCUAA	chr17:26911254-26911505(-)$1	251	137	167	10.7861
CAGGAACACAGUGGUUCCACUGUACCUUCC	chr17:40642416-40642674(+)$1	258	85	115	10.6600
GGCCAAGCUGCACUGUGUGCGGCAGGCCUU	chr9:131825421-131825659(+)$1	238	140	170	9.3088
UGGAAAAUAUGAGAAAACUCAUGUUUGCAA	chr7:131071776-131072054(+)$1	278	152	182	13.2398
GGAUUCCAGUGCCAAGGUAGGCUCUGGGGC	chr16:23848616-23848828(+)$1	212	95	125	9.1886
CCGGAGGUCUCAGGGGAGGGGCCUGGGGGC	chr19:18547930-18548238(-)$1	308	149	179	10.5085
AAGUCAAGCUGGAUUAUUUCAGUGGAACUG	chr8:141828275-141828553(-)$1	278	97	127	10.8794
GGUUGCGCUGGUUGAGGGACCAGGUCAGGC	chr16:28845390-28845629(+)$1	239	188	218	10.1630
UUCAGAUGUCUUUUGGGGGAGAUAUUAGGC	chr6:31726511-31726732(+)$1	221	167	197	12.6975
GAUGUGCUGGAACGGGAGUUUCAGCGGGUC	chr1:110168840-110169083(+)$1	243	152	182	12.4807
GGAUUUCGGCCUGAGAGCGGGCCGAGGAGA	chr17:48796951-48797176(+)$1	225	38	68	10.5847
CUUCUCCUACUGCAUUAGCAUUUGGGGACC	chr2:171911546-171911783(-)$1	237	117	147	10.6184
AACUACCUGAAGCUGCUGCUUUCCUUAGUU	chr3:9724761-9724967(+)$1	206	127	157	9.8146
GUGCCAAGAGUGAGCGUUACAUUGGCACUG	chr15:49574077-49574383(+)$1	306	125	155	8.8288
GGGGCGGGCUCCUGGCAAGGCAUUCGCUCC	chr11:62303840-62304137(-)$1	297	148	178	13.3390
GGAACAGGUAAGGAUACCCCUCAACCCCAC	chr12:54799553-54799786(-)$1	233	126	156	9.3669
UUGACCUCUGCUCUGGUGGGUCAGCUGUCU	chr16:89812891-89813101(-)$1	210	95	125	12.5124
CGAGGUGGAGGAUGACAGUCCUGCCAAGGG	chr10:79569232-79569477(-)$1	245	106	136	9.9758
CCACGCUGGCUCCUCCUGGAAAGCUGUGCC	chr19:40771027-40771271(-)$1	244	178	208	13.1019
UUUGUGGGUGGUUCUUGGAUGAUUUCAUUU	chr12:62892659-62892930(+)$1	271	193	223	11.6642
CUCACAGCCUCUGGACUCGUAGGUGUGGGA	chr3:47458554-47458786(-)$1	232	67	97	10.4765
GAAGGCAGCCGGUAUGUACCUUUCUGCAUC	chr1:150297384-150297646(+)$1	262	150	180	11.5165
UUGUUUUUCAGUAUUCUUGCCAUGAGAAAA	chr2:176001078-176001303(-)$1	225	78	108	13.2908
ACUGGGUGGUGAGUGUUCUCCCCUUAGUGG	chr17:76116631-76116850(-)$1	219	136	166	10.4437
UUCUGCUCAAGGUGUGAACAUGAAUAGACU	chr6:13658916-13659169(-)$1	253	123	153	10.4308
GUUUUAGCAAGUCAUGAGAUUUGCGGAAGU	chr15:69728415-69728700(+)$1	285	54	84	10.4631
UCGCGUCCCAUCGUCACCGUGUGGGAGCGG	chr18:33647116-33647415(-)$1	299	156	186	10.2315
GUACCGUGAACAGGAAGCUAUUCGCCUUUG	chr7:131083952-131084295(+)$1	343	46	76	10.9548
GCAGAACCAGAUCACAUGGUCCUGGGGAAG	chr9:95009612-95009891(-)$1	279	121	151	10.5762
CGCCCCACUGUCCUCUGGGAGGGGGGUGCU	chr8:22885136-22885364(-)$1	228	23	53	11.7950
UACAGCACAAGCAGCGCUGCCCUGUGCUGG	chr6:131931191-131931436(-)$1	245	45	75	10.6186
AGCAUCAUUAUAAAAAUUGUAACAUGUUUG	chr12:69082641-69082910(+)$1	269	209	239	9.7672
GGGGUGGGGGAGAGCUCUCUUCCUGAACAu	chr1:22082947-22083178(-)$1	231	151	181	13.0969
GUCCCCCCAGGCUGGGACAUCUCGUCGCUG	chr19:18547532-18547852(-)$1	320	155	185	9.7618
CAAGAUCCGAGUUGGGGAGCCUGGGCAUGG	chrX:153578302-153578506(-)$1	204	22	52	10.4016
AGUUUGCACACAGUGGCCUGGCUUGCCAGC	chr5:176959494-176959706(-)$1	212	87	117	13.3987
GCUUGAGAUCAGCUUUGGAGGAUCUUGGAA	chr15:42129407-42129673(+)$1	266	69	99	10.3823
UUCUUCCAGAUGUUACAAUCCAGAACAGUG	chr10:79767376-79767639(-)$1	263	6	36	9.7979
CUGCUGUUUUGCCGGAAUUGGCGGUGACUG	chr19:12811311-12811537(-)$1	226	24	54	9.8280
CUGUUCAUCAAACGCAUGUAUGAGAAGGAG	chr19:46329380-46329625(-)$1	245	12	42	10.6563
GAUGGCAUGUCCUGAUGAGAAUGUGUCAUC	chr9:123292273-123292519(-)$1	246	176	206	13.0665
UACCCUGCCAAAGUUCACUGAGAGGCGGGG	chr5:176980289-176980548(-)$1	259	52	82	10.3022
GAAGAUGGACCAUGUCUAUGGUCUCUCUAC	chr1:39781084-39781371(+)$1	287	234	264	11.1283

#DB
((.(((((((.(.....).))))))).)))	chr17:25904417-25904709(+)$1	1	236	266	9.2043
.((((((((((((....)))))))))))).	chr8:22885749-22886067(-)$1	1	134	164	13.5926
((.((((((((((....))))))).))).)	chr12:48180355-48180585(-)$1	1	77	107	12.7410
((..((((.(((......))).)))).)))	chr2:183902916-183903169(-)$1	1	30	60	8.6358
(((.(((.(((((....))))).)))....	chr6:29600545-29600807(-)$1	1	125	155	10.5205
((((.(((((.((....)).))))))))))	chr16:67200016-67200328(+)$1	1	94	124	9.4658
((.((((((.(((....)))..))))))..	chr1:1685967-1686238(-)$1	1	75	105	12.4798
..(((..((((((....))))))..)))..	chr12:53564106-53564329(-)$1	1	175	205	11.7437
..((((((..(((....)))..))))))..	chr17:26911254-26911505(-)$1	1	137	167	10.7861
..((((.((((((....))))))...))))	chr17:40642416-40642674(+)$1	1	85	115	10.6600
((((..(((((((...))))))).)))).)	chr9:131825421-131825659(+)$1	1	140	170	9.3088
((..(((((((((....))))))))).)))	chr7:131071776-131072054(+)$1	1	152	182	13.2398
((.((((((.(((......))).)))))))	chr16:23848616-23848828(+)$1	1	95	125	9.1886
((..(((((((......)))))))...)))	chr19:18547930-18548238(-)$1	1	149	179	10.5085
.(((...((((((....))))))...)))(	chr8:141828275-141828553(-)$1	1	97	127	10.8794
(((((..((((((....))))))..)).))	chr16:28845390-28845629(+)$1	1	188	218	10.1630
(...(((((((((....)))))))))))))	chr6:31726511-31726732(+)$1	1	167	197	12.6975
(((.(((((((((....))))))))).)))	chr1:110168840-110169083(+)$1	1	152	182	12.4807
.)))(((((((((....)))))))))((((	chr17:48796951-48797176(+)$1	1	38	68	10.5847
..(((((...(((....)))...)))))..	chr2:171911546-171911783(-)$1	1	117	147	10.6184
(((((...(((((....)))))...)))))	chr3:9724761-9724967(+)$1	1	127	157	9.8146
(((((((..((((...)))).))))))).)	chr15:49574077-49574383(+)$1	1	125	155	8.8288
((((((((..(((....)))..))))))))	chr11:62303840-62304137(-)$1	1	148	178	13.3390
((....(((.(((.....)))..)))...)	chr12:54799553-54799786(-)$1	1	126	156	9.3669
..(((..((((((....))).)))..))))	chr16:89812891-89813101(-)$1	1	95	125	12.5124
(....((((((((....))))).)))..))	chr10:79569232-79569477(-)$1	1	106	136	9.9758
...(((.((((((....)))..))))))..	chr19:40771027-40771271(-)$1	1	178	208	13.1019
...((((((.(((....))).).)))))..	chr12:62892659-62892930(+)$1	1	193	223	11.6642
((((((.(((.((....)).))))))))).	chr3:47458554-47458786(-)$1	1	67	97	10.4765
((..((((..(((....)))...)))).))	chr1:150297384-150297646(+)$1	1	150	180	11.5165
((.((((((((((....)))..))))))).	chr2:176001078-176001303(-)$1	1	78	108	13.2908
((((((.((.(((....)))))))))))).	chr17:76116631-76116850(-)$1	1	136	166	10.4437
.((((.(((..((....)).))).))))..	chr6:13658916-13659169(-)$1	1	123	153	10.4308
.((((.(((((((....))))))).)))((	chr15:69728415-69728700(+)$1	1	54	84	10.4631
((((.((((((((....)).))))))))))	chr18:33647116-33647415(-)$1	1	156	186	10.2315
(((..(((((.((....)).)))))...))	chr7:131083952-131084295(+)$1	1	46	76	10.9548
((....(((((((....))).))))....)	chr9:95009612-95009891(-)$1	1	121	151	10.5762
((((((.((.(((....))))))))))))(	chr8:22885136-22885364(-)$1	1	23	53	11.7950
..(((((((.(((....)))..)))))))(	chr6:131931191-131931436(-)$1	1	45	75	10.6186
(((((..((((((...)))))).)))))))	chr12:69082641-69082910(+)$1	1	209	239	9.7672
(((((((((((((....)))))))...)))	chr1:22082947-22083178(-)$1	1	151	181	13.0969
))))).)))))))....))))))))).)..	chr19:18547532-18547852(-)$1	1	155	185	9.7618
((.(.((((.(((....))).))))).)))	chrX:153578302-153578506(-)$1	1	22	52	10.4016
.(((.(((..(((....)))...))).)))	chr5:176959494-176959706(-)$1	1	87	117	13.3987
((((((((((..(....)..)))))))...	chr15:42129407-42129673(+)$1	1	69	99	10.3823
((.(((..(((......)))..))).))))	chr10:79767376-79767639(-)$1	1	6	36	9.7979
((.(.(((((((((....)))))).))).)	chr19:12811311-12811537(-)$1	1	24	54	9.8280
((.((..(((.((....)).)))..)).))	chr19:46329380-46329625(-)$1	1	12	42	10.6563
((((((((((.((....)).))))))))))	chr9:123292273-123292519(-)$1	1	176	206	13.0665
..(((((((..((....))....)))))))	chr5:176980289-176980548(-)$1	1	52	82	10.3022
))(((.(((((((....))))))).)))..	chr1:39781084-39781371(+)$1	1	234	264	11.1283

#PSSM
e : 0.15	d : 0.13	c : 0.13	# : 0.07	" : 0.07	f : 0.07	: : 0.05	g : 0.05	i : 0.05	= : 0.03	[ : 0.01	( : 0.01	] : 0.01	{ : 0.01	b : 0.01	h : 0.01	
c : 0.19	d : 0.13	e : 0.13	# : 0.09	f : 0.07	= : 0.05	" : 0.05	g : 0.05	i : 0.05	: : 0.03	( : 0.01	A : 0.01	b : 0.01	h : 0.01	
[ : 0.17	c : 0.17	d : 0.09	g : 0.09	! : 0.07	f : 0.07	e : 0.07	" : 0.05	i : 0.05	# : 0.05	= : 0.03	
c : 0.19	g : 0.15	! : 0.09	f : 0.09	d : 0.07	e : 0.07	i : 0.05	# : 0.05	= : 0.03	[ : 0.03	b : 0.03	a : 0.03	" : 0.01	
g : 0.17	c : 0.15	i : 0.13	[ : 0.09	f : 0.09	d : 0.07	e : 0.05	# : 0.05	= : 0.03	! : 0.03	b : 0.03	" : 0.01	
g : 0.15	c : 0.13	f : 0.11	! : 0.11	i : 0.11	d : 0.07	e : 0.07	[ : 0.05	= : 0.03	" : 0.03	# : 0.03	] : 0.01	
g : 0.25	c : 0.11	! : 0.11	[ : 0.09	i : 0.09	d : 0.07	e : 0.07	f : 0.07	= : 0.03	" : 0.03	
g : 0.23	f : 0.17	c : 0.17	i : 0.09	d : 0.07	e : 0.05	= : 0.03	" : 0.03	! : 0.03	b : 0.03	[ : 0.01	
g : 0.23	f : 0.17	c : 0.13	e : 0.09	! : 0.09	i : 0.07	= : 0.03	b : 0.03	d : 0.03	[ : 0.01	" : 0.01	a : 0.01	
g : 0.19	[ : 0.15	f : 0.13	c : 0.11	! : 0.11	e : 0.09	i : 0.07	= : 0.03	d : 0.03	" : 0.01	
c : 0.37	g : 0.13	f : 0.13	[ : 0.11	i : 0.07	e : 0.05	! : 0.05	= : 0.01	d : 0.01	
c : 0.35	b : 0.15	g : 0.11	f : 0.11	i : 0.07	e : 0.05	o : 0.03	a : 0.01	= : 0.01	d : 0.01	! : 0.01	
c : 0.33	b : 0.15	g : 0.11	f : 0.11	i : 0.07	o : 0.05	e : 0.05	n : 0.01	= : 0.01	d : 0.01	a : 0.01	
m : 0.78	o : 0.07	l : 0.05	n : 0.03	4 : 0.01	f : 0.01	
m : 0.80	o : 0.07	l : 0.05	n : 0.03	4 : 0.01	
m : 0.80	o : 0.07	l : 0.05	n : 0.03	4 : 0.01	
m : 0.80	o : 0.07	n : 0.03	g : 0.01	d : 0.01	f : 0.01	4 : 0.01	
c : 0.31	b : 0.15	g : 0.11	f : 0.09	i : 0.09	e : 0.05	a : 0.03	o : 0.03	= : 0.01	d : 0.01	n : 0.01	m : 0.01	
c : 0.35	b : 0.15	g : 0.11	f : 0.11	i : 0.09	e : 0.05	] : 0.01	= : 0.01	o : 0.01	d : 0.01	2 : 0.01	
c : 0.37	g : 0.13	] : 0.13	f : 0.11	i : 0.09	e : 0.05	= : 0.01	d : 0.01	2 : 0.01	4 : 0.01	
g : 0.15	2 : 0.13	f : 0.13	c : 0.11	e : 0.09	i : 0.09	] : 0.09	3 : 0.05	= : 0.03	b : 0.03	4 : 0.01	
g : 0.17	2 : 0.15	f : 0.13	e : 0.09	i : 0.09	c : 0.09	3 : 0.05	= : 0.03	b : 0.03	d : 0.03	] : 0.01	a : 0.01	4 : 0.01	
g : 0.23	f : 0.17	i : 0.11	c : 0.11	] : 0.09	3 : 0.07	d : 0.05	= : 0.03	e : 0.03	2 : 0.01	4 : 0.01	
g : 0.23	c : 0.13	f : 0.13	i : 0.13	d : 0.07	e : 0.07	2 : 0.05	3 : 0.05	= : 0.03	] : 0.03	
g : 0.13	i : 0.13	d : 0.11	c : 0.11	f : 0.11	3 : 0.09	] : 0.07	e : 0.07	2 : 0.07	= : 0.03	
c : 0.19	g : 0.13	i : 0.13	f : 0.11	d : 0.09	3 : 0.09	e : 0.05	= : 0.03	b : 0.03	2 : 0.01	4 : 0.01	a : 0.01	] : 0.01	
c : 0.15	] : 0.13	e : 0.11	g : 0.11	d : 0.09	f : 0.09	3 : 0.07	= : 0.03	4 : 0.03	b : 0.03	i : 0.03	F : 0.01	2 : 0.01	
c : 0.19	e : 0.15	d : 0.11	f : 0.09	g : 0.09	] : 0.05	i : 0.05	= : 0.03	4 : 0.03	3 : 0.03	F : 0.01	2 : 0.01	a : 0.01	h : 0.01	6 : 0.01	
c : 0.13	e : 0.11	4 : 0.11	d : 0.09	] : 0.07	g : 0.07	f : 0.05	i : 0.05	= : 0.03	3 : 0.03	2 : 0.03	F : 0.01	5 : 0.01	a : 0.01	b : 0.01	h : 0.01	6 : 0.01	: : 0.01	
e : 0.17	c : 0.13	d : 0.11	4 : 0.09	b : 0.07	] : 0.05	i : 0.05	2 : 0.05	3 : 0.01	F : 0.01	5 : 0.01	f : 0.01	C : 0.01	h : 0.01	6 : 0.01	a : 0.01	= : 0.01	g : 0.01	: : 0.01	

#score	560.4907254639513
#seq	51
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_transcript_m2_run2.txt

#BEAR
dd[ccc[ccclllccc]ccc22d	chr2:132038631-132038895(+)$1	264	207	230	8.0189
eeee[bboooooobb]eeeee44	chr1:32832198-32832472(-)$1	274	81	104	8.8315
ga[ddddnnnnndddd]a]gggg	chr17:41464612-41464880(-)$1	268	37	60	7.2430
iiiiiiiooooooiiiiiiiiiE	chr3:9476298-9476552(+)$1	254	63	86	9.3467
dd!!cccooooooccc22dddd2	chr17:78311132-78311455(+)$1	323	195	218	10.7590
ccc[ddddmmmmdddd]ccc]bb	chr5:154136430-154136705(+)$1	275	101	124	8.0755
!gggggggmmmmgggggggeeee	chr12:56554868-56555123(+)$1	255	80	103	6.8164
ccc[cccooooooccc]cccccc	chr11:568100-568380(-)$1	280	128	151	11.6318
#ffffffooooooffffffffff	chr19:13049631-13049868(+)$1	237	207	230	8.5232
gggggggooooooggggggg::d	chr1:220383868-220384128(-)$1	260	3	26	8.1341
[ddddbboooooobb]dddd]bb	chr7:139056195-139056448(+)$1	253	191	214	8.8492
[ffffffooooooffffff22ee	chr4:71847769-71848022(+)$1	253	207	230	8.7604
b[ccc[cccmmmmccc]ccc]bb	chr5:43483682-43484015(-)$1	333	310	333	8.1516
fccccccooooooccc]ccc]ff	chr1:245026385-245026641(-)$1	256	28	51	11.6033
ee!!ddddmmmmdddd22eeeee	chr6:43745756-43745983(+)$1	227	22	45	7.7056
a[eeeeeooooooeeeee]a]cc	chr3:100428670-100428988(+)$1	318	179	202	9.0829
dccc[ddddllldddd]ccc]dd	chr17:74732714-74732970(-)$1	256	128	151	8.1458
b!!ccc[ccclllccc]ccc]bb	chr2:131968769-131969054(+)$1	285	140	163	8.2234
bbddddoooooodddd22bb]dd	chr16:28837469-28837709(+)$1	240	171	194	8.5005
ee[ddddoooooodddd22eeee	chr4:26859307-26859598(+)$1	291	148	171	9.9812
]bb:cccooooooccc:ffffff	chr17:62501566-62501822(-)$1	256	142	165	7.7616
ddddcccooooooccc]dddd::	chr2:38977641-38977917(-)$1	276	194	217	8.8182
ddd[a[cccmmmmccc]a22ddd	chr4:24538635-24538893(-)$1	258	6	29	7.2095
hhhhcccooooooccc4444hhh	chr19:2270116-2270376(+)$1	260	161	184	10.0522
fffffbboooooobb22ffffff	chrX:153627669-153627897(+)$1	228	81	104	8.8088
eeeeecccmmmmccc4444eeee	chr15:91454233-91454476(+)$1	243	208	231	7.6481
[bbddddoooooodddd22bb]d	chr17:62501999-62502240(-)$1	241	109	132	8.8796
fffffbboooooobb22ffffff	chrX:153627697-153627915(+)$1	218	53	76	8.8088
!!a!!bboooooobba22ddddd	chr1:245026262-245026521(-)$1	259	119	142	9.9920
###ddddoooooodddd4444bb	chrX:70761529-70761810(+)$1	281	111	134	9.8553
ddd[ccc[aooooooa]ccc]dd	chr16:88725044-88725303(-)$1	259	177	200	9.3143
dd[a[bboooooobb]a]ddddd	chr16:2818320-2818551(+)$1	231	4	27	9.2348
e"""cccooooooccc333eeee	chr11:62622112-62622344(-)$1	232	181	204	11.8396
ccc[ddddmmmmdddd]ccc22b	chr15:56145558-56145788(-)$1	230	106	129	7.7959
ffffffcccmmmmccc]ffffff	chr19:18682642-18682916(+)$1	274	231	254	6.9484
ee[ccc[ccclllcccccceeee	chr9:86594450-86594731(-)$1	281	56	79	7.6263
!!ccc[cccmmmmccc]ccc22a	chr17:26940991-26941300(-)$1	309	29	52	8.3186
hhhhh[aooooooa]hhhhhhhh	chr4:100870965-100871245(-)$1	280	182	205	7.6949
eeeddddoooooodddd22eeee	chr7:5569356-5569623(-)$1	267	173	196	9.7502
eeeeddddmmmmdddd4444eee	chr1:226258943-226259183(+)$1	240	208	231	7.3300
=======oooooo==========	chrX:41193692-41193942(+)$1	250	227	250	10.6603
[ccc!!ccclllccc22ccc]bb	chr20:42087426-42087677(+)$1	251	146	169	8.1328
eee[cccooooooccc]eeeee:	chr1:35647628-35647884(-)$1	256	149	172	10.3643
!cccddddmmmmdddd]ccc22b	chr17:46052349-46052635(+)$1	286	182	205	7.7770
ggggcccooooooccc]gggggg	chr5:39073971-39074265(-)$1	294	261	284	11.3698
d"""ddddmmmmdddd]dddddd	chr11:62609091-62609322(-)$1	231	160	183	7.3449
b####cccmmmmccc333bbeee	chr20:5591209-5591540(-)$1	331	191	214	7.5093
=======oooooo==========	chr7:5569695-5569970(-)$1	275	131	154	10.6603
d[cccddddllldddd]ccc]dd	chr3:47894658-47894935(-)$1	277	129	152	8.3314
[bb[bboooooobbbb]eeeee2	chr19:10406926-10407190(+)$1	264	236	259	7.7367
c"""cccooooooccc22ccc]e	chr20:42087100-42087354(+)$1	254	150	173	11.4449
[ffffffooooooffffff]bb3	chr7:6066100-6066390(-)$1	290	12	35	8.3375

#otherMatches

#Seq PSSM
ucucaugggcugggcugguguug	chr2:132038631-132038895(+)$1	264	207	230	8.0189
CUCUCAGUGGGACCUCAGAGUAU	chr1:32832198-32832472(-)$1	274	81	104	8.8315
ACCGCGUCUUGAAUGUAGAUGAG	chr17:41464612-41464880(-)$1	268	37	60	7.2430
UGAAUUUGAUAUGAAAUUUAAUG	chr3:9476298-9476552(+)$1	254	63	86	9.3467
AGAAGGGCAAGAUCCUCGCUCCA	chr17:78311132-78311455(+)$1	323	195	218	10.7590
GCCGGCCUGGGCGGGCGGGUGAC	chr5:154136430-154136705(+)$1	275	101	124	8.0755
GCUGCUUAGGUUUGGGUGGGGGA	chr12:56554868-56555123(+)$1	255	80	103	6.8164
CUCGGACGCCCAAGUUGGAGGGG	chr11:568100-568380(-)$1	280	128	151	11.6318
UCGGGGAUCUCCUUUCCUGUCCC	chr19:13049631-13049868(+)$1	237	207	230	8.5232
CAGCUGGAAAACACUAGUUGACU	chr1:220383868-220384128(-)$1	260	3	26	8.1341
UUACUAAUAAAAUUUAAGUGUUA	chr7:139056195-139056448(+)$1	253	191	214	8.8492
UGAUAAGGGUAAAUUUAUCUUAG	chr4:71847769-71848022(+)$1	253	207	230	8.7604
CUGGGGUCUGCGAGGAGCCCUGG	chr5:43483682-43484015(-)$1	333	310	333	8.1516
cggcgggagggagcccggucggc	chr1:245026385-245026641(-)$1	256	28	51	11.6033
GUUACCUGGUAAUGGGGCACAUC	chr6:43745756-43745983(+)$1	227	22	45	7.7056
GGGCUCCGGGAGGGGAGUGCGCC	chr3:100428670-100428988(+)$1	318	179	202	9.0829
gcgcgcgggaggcccgggcgACC	chr17:74732714-74732970(-)$1	256	128	151	8.1458
CAGUCCGACCUGGGGUGGGGAGG	chr2:131968769-131969054(+)$1	285	140	163	8.2234
CAUGGUGUUUAAGCCAAGUGAUG	chr16:28837469-28837709(+)$1	240	171	194	8.5005
UUGCCUCUGGGAUGGGGAGGAGC	chr4:26859307-26859598(+)$1	291	148	171	9.9812
AGGAGCUCAAAAUGGCAGCGUCG	chr17:62501566-62501822(-)$1	256	142	165	7.7616
GGCCCGGCCCCUACCGAGGCCCU	chr2:38977641-38977917(-)$1	276	194	217	8.8182
AACUGACCUAGCUAGGCCUUGUU	chr4:24538635-24538893(-)$1	258	6	29	7.2095
GCUGGUGAAUCUGCACUUUUCGG	chr19:2270116-2270376(+)$1	260	161	184	10.0522
GAGCCCCUGCACUGGUUGGCUCU	chrX:153627669-153627897(+)$1	228	81	104	8.8088
GGUGAUCCAGCUGGAUUCCUCGC	chr15:91454233-91454476(+)$1	243	208	231	7.6481
GGCGGCCGGCGGGGGCUUUGCGG	chr17:62501999-62502240(-)$1	241	109	132	8.8796
GAGCCCCUGCACUGGUUGGCUCU	chrX:153627697-153627915(+)$1	218	53	76	8.8088
AAGAUCAGUACAAUgcggccgcg	chr1:245026262-245026521(-)$1	259	119	142	9.9920
UGUACGUGUCUAGAUGUUGUGGC	chrX:70761529-70761810(+)$1	281	111	134	9.8553
GGCAAGCGCGAUGAAGAGCUGGU	chr16:88725044-88725303(-)$1	259	177	200	9.3143
GGGGAGGGAGAAACCAUGUCACA	chr16:2818320-2818551(+)$1	231	4	27	9.2348
GAUGAUUUGAAUUGAUAAGCUGA	chr11:62622112-62622344(-)$1	232	181	204	11.8396
ucucggccuuuuggcuaagauca	chr15:56145558-56145788(-)$1	230	106	129	7.7959
CCAGGAGGCGAGCGCCGUUUUGG	chr19:18682642-18682916(+)$1	274	231	254	6.9484
CCUCGAUGGCUUUGUCUCGGGCA	chr9:86594450-86594731(-)$1	281	56	79	7.6263
AGGCGGGGCUCGUGUCACGCAGC	chr17:26940991-26941300(-)$1	309	29	52	8.3186
ggcgaacgggcggggucgccccu	chr4:100870965-100871245(-)$1	280	182	205	7.6949
GUUUGCCUUUUAUGGUAAUAACG	chr7:5569356-5569623(-)$1	267	173	196	9.7502
CACGCCGCAUACGUGGAGAACGU	chr1:226258943-226259183(+)$1	240	208	231	7.3300
GCCCUUUUGGCUUGGAGGGCUUC	chrX:41193692-41193942(+)$1	250	227	250	10.6603
AUGGAACUUGAUGGGGGCCAAAG	chr20:42087426-42087677(+)$1	251	146	169	8.1328
AAUUAAUGUUUCAGUUUAUUUUU	chr1:35647628-35647884(-)$1	256	149	172	10.3643
CUCUAGCCUCCUGGUUCGGAAUG	chr17:46052349-46052635(+)$1	286	182	205	7.7770
CGAGCCCUUCUCCGGGCCUCGGG	chr5:39073971-39074265(-)$1	294	261	284	11.3698
aauaggagcuugcuccguccacu	chr11:62609091-62609322(-)$1	231	160	183	7.3449
CACUGCCCGCAGGGGAACGGCGG	chr20:5591209-5591540(-)$1	331	191	214	7.5093
CCCCGCCAGGCCCGGUGGGGGCU	chr7:5569695-5569970(-)$1	275	131	154	10.6603
GGUCCCCCUGCUGGGGAGGAGCC	chr3:47894658-47894935(-)$1	277	129	152	8.3314
GUGUCUGAACGGAgcgggcggcg	chr19:10406926-10407190(+)$1	264	236	259	7.7367
GUUUGACUUGGGUGUCCCCGAGC	chr20:42087100-42087354(+)$1	254	150	173	11.4449
UUUUCCAAAAUUCUGGAAAUGUA	chr7:6066100-6066390(-)$1	290	12	35	8.3375

#DB
((.(((.(((...))).)))..)	chr2:132038631-132038895(+)$1	1	207	230	8.0189
((((.((......)).)))))..	chr1:32832198-32832472(-)$1	1	81	104	8.8315
((.((((.....)))).).))))	chr17:41464612-41464880(-)$1	1	37	60	7.2430
(((((((......)))))))))(	chr3:9476298-9476552(+)$1	1	63	86	9.3467
((..(((......)))..)))).	chr17:78311132-78311455(+)$1	1	195	218	10.7590
(((.((((....)))).))).))	chr5:154136430-154136705(+)$1	1	101	124	8.0755
.(((((((....)))))))))))	chr12:56554868-56555123(+)$1	1	80	103	6.8164
(((.(((......))).)))(((	chr11:568100-568380(-)$1	1	128	151	11.6318
.((((((......))))))))))	chr19:13049631-13049868(+)$1	1	207	230	8.5232
(((((((......)))))))..(	chr1:220383868-220384128(-)$1	1	3	26	8.1341
.((((((......)).)))).))	chr7:139056195-139056448(+)$1	1	191	214	8.8492
.((((((......))))))..))	chr4:71847769-71848022(+)$1	1	207	230	8.7604
(.(((.(((....))).))).))	chr5:43483682-43484015(-)$1	1	310	333	8.1516
(((((((......))).))).))	chr1:245026385-245026641(-)$1	1	28	51	11.6033
((..((((....))))..)))))	chr6:43745756-43745983(+)$1	1	22	45	7.7056
(.(((((......))))).).))	chr3:100428670-100428988(+)$1	1	179	202	9.0829
((((.((((...)))).))).))	chr17:74732714-74732970(-)$1	1	128	151	8.1458
(..(((.(((...))).))).))	chr2:131968769-131969054(+)$1	1	140	163	8.2234
((((((......))))..)).))	chr16:28837469-28837709(+)$1	1	171	194	8.5005
((.((((......))))..))))	chr4:26859307-26859598(+)$1	1	148	171	9.9812
.)).(((......))).((((((	chr17:62501566-62501822(-)$1	1	142	165	7.7616
(((((((......))).))))..	chr2:38977641-38977917(-)$1	1	194	217	8.8182
(((.(.(((....))).)..)))	chr4:24538635-24538893(-)$1	1	6	29	7.2095
(((((((......)))....)))	chr19:2270116-2270376(+)$1	1	161	184	10.0522
(((((((......))..))))))	chrX:153627669-153627897(+)$1	1	81	104	8.8088
((((((((....)))....))))	chr15:91454233-91454476(+)$1	1	208	231	7.6481
.((((((......))))..)).)	chr17:62501999-62502240(-)$1	1	109	132	8.8796
(((((((......))..))))))	chrX:153627697-153627915(+)$1	1	53	76	8.8088
..(..((......)))..))))(	chr1:245026262-245026521(-)$1	1	119	142	9.9920
...((((......))))....))	chrX:70761529-70761810(+)$1	1	111	134	9.8553
(((.(((.(......).))).))	chr16:88725044-88725303(-)$1	1	177	200	9.3143
((.(.((......)).).))))(	chr16:2818320-2818551(+)$1	1	4	27	9.2348
(...(((......)))...))))	chr11:62622112-62622344(-)$1	1	181	204	11.8396
(((.((((....)))).)))..)	chr15:56145558-56145788(-)$1	1	106	129	7.7959
(((((((((....))).))))))	chr19:18682642-18682916(+)$1	1	231	254	6.9484
((.(((.(((...))))))))))	chr9:86594450-86594731(-)$1	1	56	79	7.6263
..(((.(((....))).)))..)	chr17:26940991-26941300(-)$1	1	29	52	8.3186
(((((.(......).))))))))	chr4:100870965-100871245(-)$1	1	182	205	7.6949
(((((((......))))..))))	chr7:5569356-5569623(-)$1	1	173	196	9.7502
((((((((....))))....)))	chr1:226258943-226259183(+)$1	1	208	231	7.3300
(((((((......))))))))))	chrX:41193692-41193942(+)$1	1	227	250	10.6603
.(((..(((...)))..))).))	chr20:42087426-42087677(+)$1	1	146	169	8.1328
(((.(((......))).))))).	chr1:35647628-35647884(-)$1	1	149	172	10.3643
.(((((((....)))).)))..)	chr17:46052349-46052635(+)$1	1	182	205	7.7770
(((((((......))).))))))	chr5:39073971-39074265(-)$1	1	261	284	11.3698
(...((((....)))).))))))	chr11:62609091-62609322(-)$1	1	160	183	7.3449
(....(((....)))...)))))	chr20:5591209-5591540(-)$1	1	191	214	7.5093
(((((((......))))))))))	chr7:5569695-5569970(-)$1	1	131	154	10.6603
(.(((((((...)))).))).))	chr3:47894658-47894935(-)$1	1	129	152	8.3314
.((.((......)))).))))).	chr19:10406926-10407190(+)$1	1	236	259	7.7367
(...(((......)))..))).)	chr20:42087100-42087354(+)$1	1	150	173	11.4449
.((((((......)))))).)).	chr7:6066100-6066390(-)$1	1	12	35	8.3375

#PSSM
d : 0.17	e : 0.17	[ : 0.11	c : 0.07	! : 0.07	b : 0.07	f : 0.07	g : 0.05	# : 0.03	h : 0.03	= : 0.03	i : 0.01	a : 0.01	] : 0.01	
e : 0.15	d : 0.13	c : 0.13	f : 0.11	b : 0.07	g : 0.05	[ : 0.05	! : 0.05	" : 0.05	h : 0.03	# : 0.03	= : 0.03	a : 0.01	i : 0.01	
c : 0.19	e : 0.11	f : 0.11	[ : 0.09	d : 0.09	! : 0.05	g : 0.05	b : 0.05	" : 0.05	h : 0.03	# : 0.03	= : 0.03	i : 0.01	a : 0.01	
c : 0.19	d : 0.15	[ : 0.13	f : 0.11	e : 0.07	! : 0.05	g : 0.05	" : 0.05	h : 0.03	= : 0.03	i : 0.01	: : 0.01	a : 0.01	# : 0.01	
c : 0.32	d : 0.24	f : 0.11	[ : 0.05	g : 0.03	e : 0.03	! : 0.03	= : 0.03	i : 0.01	a : 0.01	h : 0.01	# : 0.01	b : 0.01	
c : 0.30	d : 0.26	b : 0.13	f : 0.07	[ : 0.07	g : 0.03	= : 0.03	i : 0.01	e : 0.01	! : 0.01	
c : 0.34	d : 0.24	b : 0.11	[ : 0.05	f : 0.05	g : 0.03	o : 0.03	= : 0.03	i : 0.01	e : 0.01	a : 0.01	
o : 0.59	c : 0.19	d : 0.15	n : 0.01	g : 0.01	[ : 0.01	
o : 0.59	m : 0.17	c : 0.15	d : 0.03	n : 0.01	a : 0.01	
o : 0.61	m : 0.24	c : 0.05	l : 0.05	n : 0.01	
o : 0.61	m : 0.24	l : 0.11	n : 0.01	
o : 0.61	m : 0.24	l : 0.11	n : 0.01	
o : 0.57	d : 0.19	m : 0.07	l : 0.05	c : 0.05	g : 0.01	b : 0.01	
c : 0.38	d : 0.26	b : 0.13	f : 0.05	g : 0.03	= : 0.03	i : 0.01	e : 0.01	o : 0.01	a : 0.01	
c : 0.38	d : 0.26	b : 0.13	f : 0.05	g : 0.03	= : 0.03	i : 0.01	e : 0.01	o : 0.01	] : 0.01	
c : 0.32	d : 0.26	] : 0.05	f : 0.05	2 : 0.05	g : 0.03	a : 0.03	= : 0.03	i : 0.01	e : 0.01	4 : 0.01	h : 0.01	3 : 0.01	b : 0.01	
] : 0.38	2 : 0.15	d : 0.09	f : 0.05	4 : 0.05	e : 0.03	g : 0.03	3 : 0.03	= : 0.03	i : 0.01	: : 0.01	a : 0.01	c : 0.01	h : 0.01	
c : 0.26	2 : 0.15	f : 0.13	e : 0.07	4 : 0.07	g : 0.05	d : 0.05	a : 0.03	3 : 0.03	= : 0.03	i : 0.01	] : 0.01	h : 0.01	
c : 0.28	f : 0.13	d : 0.11	e : 0.07	2 : 0.07	4 : 0.07	g : 0.05	] : 0.03	b : 0.03	= : 0.03	i : 0.01	3 : 0.01	h : 0.01	
c : 0.26	e : 0.19	d : 0.11	f : 0.09	g : 0.05	b : 0.05	4 : 0.05	2 : 0.03	= : 0.03	i : 0.01	a : 0.01	h : 0.01	] : 0.01	
e : 0.23	] : 0.21	d : 0.11	2 : 0.09	f : 0.09	g : 0.03	c : 0.03	h : 0.03	b : 0.03	= : 0.03	i : 0.01	: : 0.01	4 : 0.01	
e : 0.23	d : 0.17	b : 0.13	f : 0.11	2 : 0.07	g : 0.03	c : 0.03	: : 0.03	h : 0.03	] : 0.03	= : 0.03	4 : 0.01	i : 0.01	
d : 0.21	e : 0.21	b : 0.15	f : 0.11	g : 0.03	2 : 0.03	c : 0.03	: : 0.03	h : 0.03	= : 0.03	4 : 0.01	E : 0.01	a : 0.01	3 : 0.01	

#score	459.74273946367134
#seq	52
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_transcript_m1_run1.txt

#BEAR
gggg"""ddddlllddddggggggg	chr11:106689578-106689788(-)$1	210	168	193	8.4373
eeeccca[ccclllccc]a]ccc33	chr20:62597553-62597756(-)$1	203	137	162	9.8294
eeee!!cccnnnnnccc4444eeee	chr1:569796-570078(-)$1	282	2	27	8.2563
ffffff[cccmmmmcccffffff33	chr7:103029314-103029525(-)$1	211	124	149	10.3052
$ccc[cccooooooccc]ccc22ee	chr2:97535492-97535811(-)$1	319	94	119	8.5993
"""ccc!!bbmmmmbb22ccc333a	chr1:227087882-227088095(+)$1	213	109	134	9.9843
"""gggggggoooooogggggggbb	chr11:17097033-17097271(-)$1	238	92	117	8.7002
cc####ddddmmmmdddd333cccd	chr19:33667905-33668141(+)$1	236	161	186	9.5113
#ffffff[bbmmmmbb]ffffffbb	chr3:23959240-23959465(+)$1	225	110	135	7.7804
!iiiiiiiiimmmmiiiiiiiii]c	chr6:34555094-34555366(-)$1	272	231	256	10.8797
&&a[ccc[ccclllccc22ccc]a9	chr10:128256276-128256488(-)$1	212	140	165	8.2626
gg[gggggggmmmmggggggg]ggg	chr11:72414344-72414560(-)$1	216	156	181	10.6214
d[a[ffffffmmmmffffff]a]dd	chr5:140090781-140090996(+)$1	215	74	99	8.3521
ffffff[cccmmmmcccffffff33	chr7:103029305-103029514(-)$1	209	113	138	10.3052
eeeccca[ccclllccc]a]ccc33	chr20:62597556-62597772(-)$1	216	153	178	9.8294
==========mmmm===========	chr13:41634801-41635036(-)$1	235	198	223	11.5485
""dddd[cccmmmmccc]dddd333	chr15:66069976-66070236(-)$1	260	89	114	10.6289
ffffffddddmmmmdddd]ffffff	chr17:73029931-73030188(+)$1	257	200	225	8.3307
[ffffffcccmmmmccc]ffffff2	chr22:17091062-17091320(+)$1	258	206	231	10.0154
eee[bb[cccmmmmccc]bb]eeee	chr11:75115614-75115831(+)$1	217	110	135	9.5637
eeee[eeeeemmmmeeeee333eee	chr17:8125488-8125719(-)$1	231	64	89	8.3287
gggggg!!bbnnnnnbb22gggggg	chr15:45492508-45492745(-)$1	237	78	103	7.7140
"bb"""a[bbmmmmbba333bb]dd	chr17:76758487-76758709(-)$1	222	128	153	8.9470
iiiiiiicccooooooccc]iiiii	chr12:133451183-133451460(-)$1	277	39	64	9.3049
fccc!!ddddmmmmdddd22ccc]f	chr17:33430286-33430572(-)$1	286	7	32	9.2164
===========lll===========	chr11:62293169-62293424(-)$1	255	165	190	10.5801
ff!!a[ddddmmmmdddda22ffff	chr20:36027093-36027357(+)$1	264	115	140	8.7550
ggggggddddmmmmdddd22ggggg	chr15:74222553-74222757(+)$1	204	13	38	9.6145
c!!ccc[cccmmmmccc]ccc>>>>	chr1:94313076-94313318(+)$1	242	116	141	10.6253
""ddddcccnnnnnccc333dddd3	chr13:92003090-92003317(+)$1	227	190	215	8.4113
fff[ccc[bbmmmmbb]cccfffff	chrX:16185913-16186162(-)$1	249	7	32	8.5891
dd"""a[cccmmmmccca]dddddd	chr18:2716889-2717121(+)$1	232	58	83	10.0758
eeeee!!cccmmmmccc22eeeeeE	chr1:227087874-227088080(+)$1	206	3	28	9.2426
ggggg!!cccmmmmcccggggggge	chr17:26919409-26919658(-)$1	249	42	67	11.3721
dddd[eeeeemmmmeeeee]dddd]	chr13:92000503-92000748(+)$1	245	63	88	7.5415
d[dddd[ccclllcccdddddddd]	chrX:71284303-71284524(+)$1	221	27	52	7.5686
bb[gggggggmmmmggggggg22bb	chr11:9481795-9482048(-)$1	253	180	205	9.1618
==========mmmm===========	chr13:41634760-41634980(-)$1	220	142	167	11.5485
ccgggggggooooooggggggg22c	chr21:42006116-42006339(-)$1	223	57	82	8.6200
!dddd[ddddmmmmdddd]dddd22	chr7:149286068-149286300(-)$1	232	30	55	8.2453
cc[ccc[ccclllcccccc]ccc44	chr20:36026940-36027238(+)$1	298	204	229	9.7755
"""gggggggmmmmggggggg333f	chr1:45187465-45187674(-)$1	209	165	190	11.0854
ccgggggggoooooogggggggddd	chr1:4771981-4772204(+)$1	223	108	133	8.4001
==========mmmm===========	chr13:41634780-41635001(-)$1	221	163	188	11.5485
dd[ccc[cccmmmmccc22ccc]dd	chr22:20110946-20111199(+)$1	253	97	122	10.9150
!!==========lll==========	chr17:8125449-8125688(-)$1	239	175	200	9.7342
$$dddd[cccmmmmcccdddd]fff	chr6:76735915-76736142(-)$1	227	180	205	9.3397
[eeeee[cccmmmmccc22eeeee2	chr10:79793520-79793765(+)$1	245	17	42	10.2978
&&a[ccc[ccclllccc22ccc]a9	chr10:128256268-128256476(-)$1	208	128	153	8.2626
gg[gggggggmmmmggggggg]ggg	chr11:72414339-72414544(-)$1	205	140	165	10.6214
gggggggcccmmmmccc333ggggg	chr19:14280678-14280944(-)$1	266	22	47	11.9164
"""gggggggmmmmggggggg333f	chr1:45187452-45187665(-)$1	213	156	181	11.0854
ee####cccnnnnnccc4444eeee	chr10:64573513-64573723(-)$1	210	29	54	8.3686
ee####cccnnnnnccc4444eeee	chr10:64573524-64573735(-)$1	211	41	66	8.3686

#otherMatches

#Seq PSSM
gagaucuaaggccgccuuucucugg	chr11:106689578-106689788(-)$1	210	168	193	8.4373
CAAGCCGGUGACAGUCAGCAGGCCC	chr20:62597553-62597756(-)$1	203	137	162	9.8294
AGCUAGGCUGGAGUGGUAAAAGGCU	chr1:569796-570078(-)$1	282	2	27	8.2563
GACUUUAGGUGUAGACCAAAGUUUA	chr7:103029314-103029525(-)$1	211	124	149	10.3052
ggcuggcgggcgagcgcgggcaggc	chr2:97535492-97535811(-)$1	319	94	119	8.5993
AUUGGCUCUCUACAGAAUGCCUGCG	chr1:227087882-227088095(+)$1	213	109	134	9.9843
CCUUUUCAGGUGUAAUCCUGAGAGA	chr11:17097033-17097271(-)$1	238	92	117	8.7002
GCUCCUGCACUUUUGUGCUCUGUAC	chr19:33667905-33668141(+)$1	236	161	186	9.5113
AUGGGUGCAUACAAGUACAUCCAGG	chr3:23959240-23959465(+)$1	225	110	135	7.7804
AGAUGAGGAGGUUUUUCCUUAUUGU	chr6:34555094-34555366(-)$1	272	231	256	10.8797
UUCUCCACCUGCUCCAGUCUGGCGU	chr10:128256276-128256488(-)$1	212	140	165	8.2626
UGACUGGGCAGCUGUGUCCAGGCAG	chr11:72414344-72414560(-)$1	216	156	181	10.6214
CUCCGGGCUGGCUUUAGCUCAGCGG	chr5:140090781-140090996(+)$1	215	74	99	8.3521
GACUUUAGGUGUAGACCAAAGUUUA	chr7:103029305-103029514(-)$1	209	113	138	10.3052
CAAGCCGGUGACAGUCAGCAGGCCC	chr20:62597556-62597772(-)$1	216	153	178	9.8294
GUUUGGAGGGCUGACUUUUUAAAUC	chr13:41634801-41635036(-)$1	235	198	223	11.5485
cccacuuuggccucccacaguguug	chr15:66069976-66070236(-)$1	260	89	114	10.6289
GCUGGAAUCGACCUUGGUCUCUAGU	chr17:73029931-73030188(+)$1	257	200	225	8.3307
CUGAUCAACUUUAUGGUGUGAUUAA	chr22:17091062-17091320(+)$1	258	206	231	10.0154
GCAUCAAGGUGAAGAUCAUGCUGCC	chr11:75115614-75115831(+)$1	217	110	135	9.5637
GAUUCGGAGAAAGGUCUCUACAGGU	chr17:8125488-8125719(-)$1	231	64	89	8.3287
ugguuaguacucugcguuguggccg	chr15:45492508-45492745(-)$1	237	78	103	7.7140
ACCUUAGUGCCUUUGCCCAUGGAAU	chr17:76758487-76758709(-)$1	222	128	153	8.9470
UCCUGGGCAGUCCCGCCUGUUCCAG	chr12:133451183-133451460(-)$1	277	39	64	9.3049
AGGUGACUGGUUCUUCAGGAACUGU	chr17:33430286-33430572(-)$1	286	7	32	9.2164
ACAUUGAUGUCCCAGAUGUUAAUGU	chr11:62293169-62293424(-)$1	255	165	190	10.5801
UGCUGUCCCUGGGAAGGGCCUCACU	chr20:36027093-36027357(+)$1	264	115	140	8.7550
GGCCCUCCCUGUCAGGGGCUAGGGC	chr15:74222553-74222757(+)$1	204	13	38	9.6145
guucgagucccggcggagucgUAAC	chr1:94313076-94313318(+)$1	242	116	141	10.6253
UGUAGAAUCUGCCUGGUCUAUCUGA	chr13:92003090-92003317(+)$1	227	190	215	8.4113
GUCUCCUCAUCAGCAUCAGGGACCU	chrX:16185913-16186162(-)$1	249	7	32	8.5891
caauucucauacccauggcuggggc	chr18:2716889-2717121(+)$1	232	58	83	10.0758
gggauuaagguagACCUCCAUCCUG	chr1:227087874-227088080(+)$1	206	3	28	9.2426
UGCUCCAAGGAAAGCCUGAGCAGUA	chr17:26919409-26919658(-)$1	249	42	67	11.3721
CCCGUGCCUUCUccggggcccgggg	chr13:92000503-92000748(+)$1	245	63	88	7.5415
auccacaccugacagggugguugug	chrX:71284303-71284524(+)$1	221	27	52	7.5686
GGUGGGAGGGUGAGCCUUCCUCUCC	chr11:9481795-9482048(-)$1	253	180	205	9.1618
GUUUGGAGGGCUGACUUUUUAAAUC	chr13:41634760-41634980(-)$1	220	142	167	11.5485
UCCCUCUGUGUGCAGACAGAGGCUG	chr21:42006116-42006339(-)$1	223	57	82	8.6200
GGUUUAUAGUAGUUAUUAGAGAUAG	chr7:149286068-149286300(-)$1	232	30	55	8.2453
GGGUGAAUGCACAGCGUCAGCCAUU	chr20:36026940-36027238(+)$1	298	204	229	9.7755
aacaacuaugaguuuaugguuaaau	chr1:45187465-45187674(-)$1	209	165	190	11.0854
ccgcggucgccgccccggccgcccc	chr1:4771981-4772204(+)$1	223	108	133	8.4001
GUUUGGAGGGCUGACUUUUUAAAUC	chr13:41634780-41635001(-)$1	221	163	188	11.5485
CGGGCAGUGUAAGAGCAGAUGUGUG	chr22:20110946-20111199(+)$1	253	97	122	10.9150
AAUCCGUCCUGGUCCCUGGGAUGGA	chr17:8125449-8125688(-)$1	239	175	200	9.7342
acagccaugacaauuuaggcuugca	chr6:76735915-76736142(-)$1	227	180	205	9.3397
UCGUGGCGCGCCCACGCCCCCACGC	chr10:79793520-79793765(+)$1	245	17	42	10.2978
UUCUCCACCUGCUCCAGUCUGGCGU	chr10:128256268-128256476(-)$1	208	128	153	8.2626
UGACUGGGCAGCUGUGUCCAGGCAG	chr11:72414339-72414544(-)$1	205	140	165	10.6214
CUCUGAGGCCUGGUGGCAGAUUCAG	chr19:14280678-14280944(-)$1	266	22	47	11.9164
aacaacuaugaguuuaugguuaaau	chr1:45187452-45187665(-)$1	213	156	181	11.0854
AGAGAGACCUACAUGGUACAGCUGG	chr10:64573513-64573723(-)$1	210	29	54	8.3686
AGAGAGACCUACAUGGUACAGCUGG	chr10:64573524-64573735(-)$1	211	41	66	8.3686

#DB
((((...((((...)))))))))))	chr11:106689578-106689788(-)$1	1	168	193	8.4373
(((((((.(((...))).).)))..	chr20:62597553-62597756(-)$1	1	137	162	9.8294
((((..(((.....)))....))))	chr1:569796-570078(-)$1	1	2	27	8.2563
((((((.(((....)))))))))..	chr7:103029314-103029525(-)$1	1	124	149	10.3052
.(((.(((......))).)))..))	chr2:97535492-97535811(-)$1	1	94	119	8.5993
...(((..((....))..)))...)	chr1:227087882-227088095(+)$1	1	109	134	9.9843
...(((((((......)))))))))	chr11:17097033-17097271(-)$1	1	92	117	8.7002
((....((((....))))...)))(	chr19:33667905-33668141(+)$1	1	161	186	9.5113
.((((((.((....)).))))))))	chr3:23959240-23959465(+)$1	1	110	135	7.7804
.(((((((((....))))))))).)	chr6:34555094-34555366(-)$1	1	231	256	10.8797
..(.(((.(((...)))..))).).	chr10:128256276-128256488(-)$1	1	140	165	8.2626
((.(((((((....))))))).)))	chr11:72414344-72414560(-)$1	1	156	181	10.6214
(.(.((((((....)))))).).))	chr5:140090781-140090996(+)$1	1	74	99	8.3521
((((((.(((....)))))))))..	chr7:103029305-103029514(-)$1	1	113	138	10.3052
(((((((.(((...))).).)))..	chr20:62597556-62597772(-)$1	1	153	178	9.8294
((((((((((....)))))))))))	chr13:41634801-41635036(-)$1	1	198	223	11.5485
..((((.(((....))).))))...	chr15:66069976-66070236(-)$1	1	89	114	10.6289
((((((((((....)))).))))))	chr17:73029931-73030188(+)$1	1	200	225	8.3307
.(((((((((....))).)))))).	chr22:17091062-17091320(+)$1	1	206	231	10.0154
(((.((.(((....))).)).))))	chr11:75115614-75115831(+)$1	1	110	135	9.5637
((((.(((((....)))))...)))	chr17:8125488-8125719(-)$1	1	64	89	8.3287
((((((..((.....))..))))))	chr15:45492508-45492745(-)$1	1	78	103	7.7140
.((...(.((....)))...)).))	chr17:76758487-76758709(-)$1	1	128	153	8.9470
((((((((((......))).)))))	chr12:133451183-133451460(-)$1	1	39	64	9.3049
((((..((((....))))..))).)	chr17:33430286-33430572(-)$1	1	7	32	9.2164
(((((((((((...)))))))))))	chr11:62293169-62293424(-)$1	1	165	190	10.5801
((..(.((((....)))))..))))	chr20:36027093-36027357(+)$1	1	115	140	8.7550
((((((((((....))))..)))))	chr15:74222553-74222757(+)$1	1	13	38	9.6145
(..(((.(((....))).)))....	chr1:94313076-94313318(+)$1	1	116	141	10.6253
..(((((((.....)))...)))).	chr13:92003090-92003317(+)$1	1	190	215	8.4113
(((.(((.((....)).))))))))	chrX:16185913-16186162(-)$1	1	7	32	8.5891
((...(.(((....)))).))))))	chr18:2716889-2717121(+)$1	1	58	83	10.0758
(((((..(((....)))..)))))(	chr1:227087874-227088080(+)$1	1	3	28	9.2426
(((((..(((....)))))))))))	chr17:26919409-26919658(-)$1	1	42	67	11.3721
((((.(((((....))))).)))).	chr13:92000503-92000748(+)$1	1	63	88	7.5415
(.((((.(((...))))))))))).	chrX:71284303-71284524(+)$1	1	27	52	7.5686
((.(((((((....)))))))..))	chr11:9481795-9482048(-)$1	1	180	205	9.1618
((((((((((....)))))))))))	chr13:41634760-41634980(-)$1	1	142	167	11.5485
(((((((((......)))))))..)	chr21:42006116-42006339(-)$1	1	57	82	8.6200
.((((.((((....)))).))))..	chr7:149286068-149286300(-)$1	1	30	55	8.2453
((.(((.(((...)))))).)))..	chr20:36026940-36027238(+)$1	1	204	229	9.7755
...(((((((....)))))))...)	chr1:45187465-45187674(-)$1	1	165	190	11.0854
))(((((((......)))))))(((	chr1:4771981-4772204(+)$1	1	108	133	8.4001
((((((((((....)))))))))))	chr13:41634780-41635001(-)$1	1	163	188	11.5485
((.(((.(((....)))..))).))	chr22:20110946-20111199(+)$1	1	97	122	10.9150
..((((((((((...))))))))))	chr17:8125449-8125688(-)$1	1	175	200	9.7342
..((((.(((....))))))).)))	chr6:76735915-76736142(-)$1	1	180	205	9.3397
.(((((.(((....)))..))))).	chr10:79793520-79793765(+)$1	1	17	42	10.2978
..(.(((.(((...)))..))).).	chr10:128256268-128256476(-)$1	1	128	153	8.2626
((.(((((((....))))))).)))	chr11:72414339-72414544(-)$1	1	140	165	10.6214
((((((((((....)))...)))))	chr19:14280678-14280944(-)$1	1	22	47	11.9164
...(((((((....)))))))...)	chr1:45187452-45187665(-)$1	1	156	181	11.0854
((....(((.....)))....))))	chr10:64573513-64573723(-)$1	1	29	54	8.3686
((....(((.....)))....))))	chr10:64573524-64573735(-)$1	1	41	66	8.3686

#PSSM
e : 0.14	g : 0.12	" : 0.12	f : 0.11	c : 0.09	d : 0.09	= : 0.07	! : 0.05	$ : 0.03	& : 0.03	[ : 0.03	# : 0.01	i : 0.01	b : 0.01	
e : 0.16	g : 0.12	f : 0.12	c : 0.11	" : 0.11	= : 0.07	d : 0.07	i : 0.03	& : 0.03	[ : 0.03	b : 0.03	! : 0.03	$ : 0.01	
g : 0.12	e : 0.12	f : 0.11	d : 0.11	" : 0.09	[ : 0.09	= : 0.09	# : 0.05	a : 0.05	c : 0.03	i : 0.03	! : 0.03	b : 0.01	
g : 0.24	c : 0.14	d : 0.11	f : 0.09	[ : 0.09	= : 0.09	e : 0.07	# : 0.05	i : 0.03	" : 0.03	! : 0.01	
g : 0.22	c : 0.16	f : 0.11	= : 0.09	d : 0.09	" : 0.05	[ : 0.05	# : 0.05	! : 0.03	i : 0.03	e : 0.03	b : 0.01	a : 0.01	
g : 0.20	c : 0.18	f : 0.11	= : 0.09	! : 0.07	d : 0.07	# : 0.05	e : 0.05	" : 0.03	i : 0.03	[ : 0.03	b : 0.01	a : 0.01	
[ : 0.20	g : 0.16	c : 0.14	d : 0.11	= : 0.09	! : 0.07	a : 0.05	f : 0.05	i : 0.03	e : 0.03	" : 0.01	
c : 0.38	g : 0.14	d : 0.12	[ : 0.12	= : 0.09	! : 0.03	e : 0.03	i : 0.01	f : 0.01	
c : 0.44	g : 0.14	d : 0.12	b : 0.09	= : 0.09	e : 0.03	o : 0.01	i : 0.01	f : 0.01	
c : 0.37	d : 0.12	g : 0.11	b : 0.09	= : 0.09	n : 0.07	o : 0.05	e : 0.03	i : 0.01	f : 0.01	
m : 0.64	n : 0.09	o : 0.09	c : 0.07	= : 0.03	l : 0.03	d : 0.01	
m : 0.64	l : 0.14	n : 0.09	o : 0.09	= : 0.01	
m : 0.64	l : 0.16	n : 0.09	o : 0.09	
m : 0.64	l : 0.12	n : 0.09	o : 0.09	c : 0.03	
c : 0.44	d : 0.12	g : 0.09	b : 0.07	o : 0.07	= : 0.07	e : 0.03	i : 0.01	f : 0.01	n : 0.01	l : 0.01	
c : 0.44	d : 0.12	g : 0.12	b : 0.09	= : 0.09	o : 0.03	e : 0.03	i : 0.01	f : 0.01	
c : 0.44	d : 0.14	g : 0.14	= : 0.09	] : 0.03	e : 0.03	2 : 0.01	i : 0.01	f : 0.01	b : 0.01	a : 0.01	
d : 0.16	g : 0.16	] : 0.12	2 : 0.12	= : 0.09	f : 0.07	4 : 0.05	3 : 0.05	c : 0.05	e : 0.03	i : 0.01	a : 0.01	
g : 0.18	2 : 0.14	c : 0.11	f : 0.09	= : 0.09	3 : 0.07	a : 0.05	4 : 0.05	d : 0.05	] : 0.05	e : 0.03	i : 0.01	b : 0.01	
g : 0.20	c : 0.12	f : 0.11	] : 0.09	3 : 0.09	= : 0.09	d : 0.09	4 : 0.05	2 : 0.05	e : 0.03	i : 0.01	b : 0.01	
g : 0.24	c : 0.18	d : 0.12	f : 0.11	= : 0.09	4 : 0.05	3 : 0.03	i : 0.03	] : 0.03	e : 0.03	b : 0.01	2 : 0.01	
g : 0.14	c : 0.14	f : 0.12	e : 0.11	d : 0.11	= : 0.09	3 : 0.07	] : 0.05	2 : 0.03	i : 0.03	a : 0.01	b : 0.01	> : 0.01	
g : 0.14	f : 0.14	e : 0.12	d : 0.11	c : 0.09	] : 0.09	= : 0.09	3 : 0.07	2 : 0.05	i : 0.03	> : 0.01	
3 : 0.14	e : 0.14	d : 0.14	g : 0.12	= : 0.09	f : 0.09	b : 0.05	] : 0.03	a : 0.03	2 : 0.03	c : 0.01	i : 0.01	> : 0.01	4 : 0.01	
e : 0.12	f : 0.12	g : 0.11	3 : 0.11	d : 0.11	= : 0.09	b : 0.05	2 : 0.05	c : 0.03	9 : 0.03	] : 0.03	a : 0.01	i : 0.01	> : 0.01	E : 0.01	4 : 0.01	

#score	512.9257924937295
#seq	54
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_UTR_m3_run2.txt

#BEAR
!!ddddqqqqqqqqdddd	chr1:24975313-24975568(+)$1	255	165	183	14.9473
dddcccqqqqqqqqccc:	chr3:160219143-160219419(-)$1	276	155	173	12.8803
!!ddddqqqqqqqqdddd	chrX:102933330-102933624(-)$1	294	80	98	14.9473
:eeeeeqqqqqqqqeeee	chr4:73967994-73968347(-)$1	353	300	318	13.1495
dd!!bbqqqqqqqqbb22	chr7:104681282-104681591(+)$1	309	65	83	12.3683
"""cccqqqqqqqqccc2	chr17:66033368-66033627(+)$1	259	55	73	14.2012
bbb[bbqqqqqqqqbb22	chr17:27074967-27075236(+)$1	269	23	41	11.8308
####bbqqqqqqqqbbcc	chr3:9487288-9487525(+)$1	237	23	41	12.8832
c[ddddqqqqqqqqdddd	chr12:76444282-76444534(-)$1	252	85	103	14.7631
eeeeeeqqqqqqqqeeee	chr5:33445329-33445616(+)$1	287	32	50	13.8139
deeeeeqqqqqqqqeeee	chr11:110108154-110108476(-)$1	322	35	53	13.7877
hhhhhhqqqqqqqqhhhh	chr1:90493022-90493378(+)$1	356	267	285	12.1936
iiiiiiqqqqqqqqiiii	chr12:76453476-76453689(-)$1	213	18	36	13.6069
ffffffqqqqqqqqffff	chr5:179151635-179151885(+)$1	250	211	229	12.4101
c[ddddqqqqqqqqdddd	chr7:111928853-111929108(+)$1	255	219	237	14.7631
!eeeeeqqqqqqqqeeee	chr12:76442879-76443126(-)$1	247	186	204	14.0667
gggg[aqqqqqqqqa]gg	chr1:155883866-155884154(-)$1	288	20	38	13.6631
ccccccqqqqqqqqccc]	chr15:66791638-66791889(-)$1	251	119	137	14.0025
ggggggqqqqqqqqgggg	chr1:42643257-42643520(-)$1	263	130	148	13.6298
ddd[bbqqqqqqqqbbdd	chr3:99536635-99536995(+)$1	360	232	250	12.9470
b[ddddqqqqqqqqdddd	chr7:92243879-92244160(-)$1	281	25	43	14.6084
""ddddqqqqqqqqdddd	chr1:150198838-150199203(-)$1	365	245	263	14.8350
FFddddqqqqqqqqdddd	chr19:8530106-8530369(+)$1	263	9	27	13.7156
ggggggqqqqqqqqgggg	chr3:101292952-101293229(+)$1	277	77	95	13.6298
b[ddddqqqqqqqqdddd	chr9:116170935-116171288(-)$1	353	314	332	14.6084
!!ddddqqqqqqqqdddd	chr11:47493615-47493929(-)$1	314	21	39	14.9473
::ddddqqqqqqqqdddd	chr12:69656090-69656459(+)$1	369	213	231	12.9250
da[cccqqqqqqqqccc]	chr11:68660255-68660506(-)$1	251	70	88	14.0243
eeeeeeqqqqqqqqeeee	chr3:196214164-196214498(-)$1	334	21	39	13.8139
e[bb[aqqqqqqqqabbe	chr13:26828205-26828463(+)$1	258	215	233	12.7590
ffffffqqqqqqqqffff	chr1:150208213-150208525(-)$1	312	200	218	12.4101
e[ddddqqqqqqqqdddd	chr9:131456819-131457056(+)$1	237	164	182	14.6597
gggg[aqqqqqqqqa]gg	chr2:232577052-232577257(+)$1	205	53	71	13.6631
"""cccqqqqqqqqccc4	chr2:48025688-48025961(+)$1	273	116	134	14.2333
eeecccqqqqqqqqccc2	chr1:205719028-205719264(-)$1	236	179	197	13.9052
c[ddddqqqqqqqqdddd	chr5:95087842-95088112(+)$1	270	101	119	14.7631
eeecccqqqqqqqqccc2	chr1:205718994-205719228(-)$1	234	143	161	13.9052
C:ddddqqqqqqqqdddd	chr17:48823045-48823374(+)$1	329	247	265	12.7726
!!ddddqqqqqqqqdddd	chr12:125398091-125398421(-)$1	330	296	314	14.9473
f!!a[aqqqqqqqqa]a2	chr12:76442926-76443131(-)$1	205	30	48	13.6283
ffffffqqqqqqqqffff	chr17:61869671-61869993(+)$1	322	46	64	12.4101
c:ddddqqqqqqqqdddd	chr11:16760170-16760489(+)$1	319	248	266	13.6927
ccc!!aqqqqqqqqa22c	chr17:48823800-48824131(+)$1	331	224	242	12.9989
[eeeeeqqqqqqqqeeee	chr1:246349907-246350290(-)$1	383	325	343	13.9986
!!ddddqqqqqqqqdddd	chr17:48820972-48821274(+)$1	302	251	269	14.9473
dd[cccqqqqqqqqccc]	chr3:170584050-170584361(-)$1	311	155	173	13.8650
:eeeeeqqqqqqqqeeee	chr12:56991287-56991570(-)$1	283	235	253	13.1495
ggg[bbqqqqqqqqbbgg	chr3:156874634-156874964(-)$1	330	21	39	12.9146
ggggggqqqqqqqqgggg	chr7:139060731-139060974(+)$1	243	199	217	13.6298
c!!cccqqqqqqqqccc2	chr7:156626368-156626590(-)$1	222	124	142	14.2865
iiiiiiqqqqqqqqiiii	chr17:73775647-73775932(-)$1	285	195	213	13.6069
feeeeeqqqqqqqqeeee	chrX:102941466-102941720(-)$1	254	136	154	13.7792
bb[cccqqqqqqqqccc]	chr14:56103064-56103359(+)$1	295	100	118	13.7378
!!ddddqqqqqqqqdddd	chr19:14199895-14200272(-)$1	377	179	197	14.9473
:eeeeeqqqqqqqqeeee	chr11:32610123-32610390(+)$1	267	205	223	13.1495
""ddddqqqqqqqqdddd	chr12:56991212-56991487(-)$1	275	222	240	14.8350
eeee[aqqqqqqqqaeee	chr3:156867968-156868278(-)$1	310	245	263	13.8304
bb[cccqqqqqqqqccc]	chr17:26880534-26880805(-)$1	271	210	228	13.7378
::ddddqqqqqqqqdddd	chr4:76580851-76581155(-)$1	304	77	95	12.9250
""ddddqqqqqqqqdddd	chr11:62481406-62481670(-)$1	264	234	252	14.8350
[eeeeeqqqqqqqqeeee	chr1:16891201-16891515(-)$1	314	225	243	13.9986

#otherMatches

#Seq PSSM
GCUUUCCUAGAACUGAAG	chr1:24975313-24975568(+)$1	255	165	183	14.9473
CAGGGGGCUGAUAACCUA	chr3:160219143-160219419(-)$1	276	155	173	12.8803
CUGCCUUUCUUUCUAGGU	chrX:102933330-102933624(-)$1	294	80	98	14.9473
AAAUUAUAUUUACUUGAU	chr4:73967994-73968347(-)$1	353	300	318	13.1495
GAUACCAAUGCAUAGGAC	chr7:104681282-104681591(+)$1	309	65	83	12.3683
GCAACAAAAACUGGUGUG	chr17:66033368-66033627(+)$1	259	55	73	14.2012
ACCACCUCUCCCUUGGCA	chr17:27074967-27075236(+)$1	269	23	41	11.8308
UACAGCUGAAUAUUGCCU	chr3:9487288-9487525(+)$1	237	23	41	12.8832
UUUCCUUUAAAAAUAGGA	chr12:76444282-76444534(-)$1	252	85	103	14.7631
UUCCUGGGGCAUCACAGG	chr5:33445329-33445616(+)$1	287	32	50	13.8139
CUUCUUUUGAUAAUGAGA	chr11:110108154-110108476(-)$1	322	35	53	13.7877
UACAUUUCGGUUCUAAUG	chr1:90493022-90493378(+)$1	356	267	285	12.1936
UAAAUCAUUUUAGCGAUU	chr12:76453476-76453689(-)$1	213	18	36	13.6069
ACAGUCAAGUUAAGGAUU	chr5:179151635-179151885(+)$1	250	211	229	12.4101
UGUACCUGAUAAAUGGUA	chr7:111928853-111929108(+)$1	255	219	237	14.7631
AGCUAAAGUAAGAGUUGG	chr12:76442879-76443126(-)$1	247	186	204	14.0667
GGGUUGUUUUUUCUCUAU	chr1:155883866-155884154(-)$1	288	20	38	13.6631
CAGAGGAGAAGAAGCCUG	chr15:66791638-66791889(-)$1	251	119	137	14.0025
CCAGCCAUGGUAAGGGCU	chr1:42643257-42643520(-)$1	263	130	148	13.6298
UGGAGCAGGCAGCAGCCC	chr3:99536635-99536995(+)$1	360	232	250	12.9470
UGUGGAGUGGGUAAUCCA	chr7:92243879-92244160(-)$1	281	25	43	14.6084
AAUGAAAGAAGAAAUUCA	chr1:150198838-150199203(-)$1	365	245	263	14.8350
GUUUCUAAGUCUUGAGAA	chr19:8530106-8530369(+)$1	263	9	27	13.7156
GUGGCUGCAGGGGAGGCC	chr3:101292952-101293229(+)$1	277	77	95	13.6298
GAUCAGAAUAAAAACUGA	chr9:116170935-116171288(-)$1	353	314	332	14.6084
UUUUGUAAGUUACGACAA	chr11:47493615-47493929(-)$1	314	21	39	14.9473
gagcgugaccgagagcgC	chr12:69656090-69656459(+)$1	369	213	231	12.9250
ACAGUCAUUGAAAAGACA	chr11:68660255-68660506(-)$1	251	70	88	14.0243
GGAUUGCUCUUUAUUAAU	chr3:196214164-196214498(-)$1	334	21	39	13.8139
CAGCAGGAGCAGAACGCG	chr13:26828205-26828463(+)$1	258	215	233	12.7590
GAGUCCCAACUCUUGGAC	chr1:150208213-150208525(-)$1	312	200	218	12.4101
UUCUCCAGUCCCUGGGAG	chr9:131456819-131457056(+)$1	237	164	182	14.6597
CACAGUAGGAGGGAAGUG	chr2:232577052-232577257(+)$1	205	53	71	13.6631
AAGAGGAAGUACAGCCUA	chr2:48025688-48025961(+)$1	273	116	134	14.2333
GGUCAGUGCGGAGUCUGA	chr1:205719028-205719264(-)$1	236	179	197	13.9052
UGGAGUAUUUUAUGAUUC	chr5:95087842-95088112(+)$1	270	101	119	14.7631
GGUCAGUGCGGAGUCUGA	chr1:205718994-205719228(-)$1	234	143	161	13.9052
AACAUCAGACAGAAGAUG	chr17:48823045-48823374(+)$1	329	247	265	12.7726
UCCACCCUGCACCUGGUG	chr12:125398091-125398421(-)$1	330	296	314	14.9473
UUUCCCUACAUUAUGAGC	chr12:76442926-76443131(-)$1	205	30	48	13.6283
UUUACUGACCCCAAAGUA	chr17:61869671-61869993(+)$1	322	46	64	12.4101
UGAGGCCUACUAAAGCCU	chr11:16760170-16760489(+)$1	319	248	266	13.6927
GUCGGGACAGAGAACAAG	chr17:48823800-48824131(+)$1	331	224	242	12.9989
UGUCUCUUAGUUUUGGGG	chr1:246349907-246350290(-)$1	383	325	343	13.9986
AACUCAUUUUUAUUUGAG	chr17:48820972-48821274(+)$1	302	251	269	14.9473
UUAGUCAAGAUGAAGAUG	chr3:170584050-170584361(-)$1	311	155	173	13.8650
CCCUGUAUUGUUUGAUAG	chr12:56991287-56991570(-)$1	283	235	253	13.1495
GUUUACUCAAGCACGUAA	chr3:156874634-156874964(-)$1	330	21	39	12.9146
UUACUGAUAUGCUGCAGU	chr7:139060731-139060974(+)$1	243	199	217	13.6298
GCCAUCGUCAACAGGAUU	chr7:156626368-156626590(-)$1	222	124	142	14.2865
GUAGGCGUUCGUAGGUUU	chr17:73775647-73775932(-)$1	285	195	213	13.6069
UGGGAAGAUCUGGAUUCU	chrX:102941466-102941720(-)$1	254	136	154	13.7792
AGGUUCAACUACAAGAAG	chr14:56103064-56103359(+)$1	295	100	118	13.7378
GAGGGCUCUGAAGUGCCC	chr19:14199895-14200272(-)$1	377	179	197	14.9473
UUACUAACUUUuaauggu	chr11:32610123-32610390(+)$1	267	205	223	13.1495
UUAAAACCAUCACUUUUU	chr12:56991212-56991487(-)$1	275	222	240	14.8350
UCACACAAAUUUUCGGUG	chr3:156867968-156868278(-)$1	310	245	263	13.8304
gcacuuauugucuggaga	chr17:26880534-26880805(-)$1	271	210	228	13.7378
AUGUGCUGUAUUAUGUAU	chr4:76580851-76581155(-)$1	304	77	95	12.9250
AUAGUUUCAUUUGUGACU	chr11:62481406-62481670(-)$1	264	234	252	14.8350
CAAUUGUGGAUGCUUAAU	chr1:16891201-16891515(-)$1	314	225	243	13.9986

#DB
..((((........))))	chr1:24975313-24975568(+)$1	1	165	183	14.9473
)))(((........))).	chr3:160219143-160219419(-)$1	1	155	173	12.8803
..((((........))))	chrX:102933330-102933624(-)$1	1	80	98	14.9473
.(((((........))))	chr4:73967994-73968347(-)$1	1	300	318	13.1495
((..((........))..	chr7:104681282-104681591(+)$1	1	65	83	12.3683
...(((........))).	chr17:66033368-66033627(+)$1	1	55	73	14.2012
(((.((........))..	chr17:27074967-27075236(+)$1	1	23	41	11.8308
....((........))))	chr3:9487288-9487525(+)$1	1	23	41	12.8832
(.((((........))))	chr12:76444282-76444534(-)$1	1	85	103	14.7631
((((((........))))	chr5:33445329-33445616(+)$1	1	32	50	13.8139
)(((((........))))	chr11:110108154-110108476(-)$1	1	35	53	13.7877
((((((........))))	chr1:90493022-90493378(+)$1	1	267	285	12.1936
((((((........))))	chr12:76453476-76453689(-)$1	1	18	36	13.6069
((((((........))))	chr5:179151635-179151885(+)$1	1	211	229	12.4101
(.((((........))))	chr7:111928853-111929108(+)$1	1	219	237	14.7631
.(((((........))))	chr12:76442879-76443126(-)$1	1	186	204	14.0667
((((.(........).))	chr1:155883866-155884154(-)$1	1	20	38	13.6631
((((((........))).	chr15:66791638-66791889(-)$1	1	119	137	14.0025
((((((........))))	chr1:42643257-42643520(-)$1	1	130	148	13.6298
(((.((........))))	chr3:99536635-99536995(+)$1	1	232	250	12.9470
(.((((........))))	chr7:92243879-92244160(-)$1	1	25	43	14.6084
..((((........))))	chr1:150198838-150199203(-)$1	1	245	263	14.8350
((((((........))))	chr19:8530106-8530369(+)$1	1	9	27	13.7156
((((((........))))	chr3:101292952-101293229(+)$1	1	77	95	13.6298
(.((((........))))	chr9:116170935-116171288(-)$1	1	314	332	14.6084
..((((........))))	chr11:47493615-47493929(-)$1	1	21	39	14.9473
..((((........))))	chr12:69656090-69656459(+)$1	1	213	231	12.9250
((.(((........))).	chr11:68660255-68660506(-)$1	1	70	88	14.0243
((((((........))))	chr3:196214164-196214498(-)$1	1	21	39	13.8139
(.((.(........))))	chr13:26828205-26828463(+)$1	1	215	233	12.7590
((((((........))))	chr1:150208213-150208525(-)$1	1	200	218	12.4101
(.((((........))))	chr9:131456819-131457056(+)$1	1	164	182	14.6597
((((.(........).))	chr2:232577052-232577257(+)$1	1	53	71	13.6631
...(((........))).	chr2:48025688-48025961(+)$1	1	116	134	14.2333
((((((........))).	chr1:205719028-205719264(-)$1	1	179	197	13.9052
(.((((........))))	chr5:95087842-95088112(+)$1	1	101	119	14.7631
((((((........))).	chr1:205718994-205719228(-)$1	1	143	161	13.9052
).((((........))))	chr17:48823045-48823374(+)$1	1	247	265	12.7726
..((((........))))	chr12:125398091-125398421(-)$1	1	296	314	14.9473
(..(.(........).).	chr12:76442926-76443131(-)$1	1	30	48	13.6283
((((((........))))	chr17:61869671-61869993(+)$1	1	46	64	12.4101
).((((........))))	chr11:16760170-16760489(+)$1	1	248	266	13.6927
(((..(........)..)	chr17:48823800-48824131(+)$1	1	224	242	12.9989
.(((((........))))	chr1:246349907-246350290(-)$1	1	325	343	13.9986
..((((........))))	chr17:48820972-48821274(+)$1	1	251	269	14.9473
((.(((........))).	chr3:170584050-170584361(-)$1	1	155	173	13.8650
.(((((........))))	chr12:56991287-56991570(-)$1	1	235	253	13.1495
(((.((........))))	chr3:156874634-156874964(-)$1	1	21	39	12.9146
((((((........))))	chr7:139060731-139060974(+)$1	1	199	217	13.6298
(..(((........))).	chr7:156626368-156626590(-)$1	1	124	142	14.2865
((((((........))))	chr17:73775647-73775932(-)$1	1	195	213	13.6069
)(((((........))))	chrX:102941466-102941720(-)$1	1	136	154	13.7792
((.(((........))).	chr14:56103064-56103359(+)$1	1	100	118	13.7378
..((((........))))	chr19:14199895-14200272(-)$1	1	179	197	14.9473
.(((((........))))	chr11:32610123-32610390(+)$1	1	205	223	13.1495
..((((........))))	chr12:56991212-56991487(-)$1	1	222	240	14.8350
((((.(........))))	chr3:156867968-156868278(-)$1	1	245	263	13.8304
((.(((........))).	chr17:26880534-26880805(-)$1	1	210	228	13.7378
..((((........))))	chr4:76580851-76581155(-)$1	1	77	95	12.9250
..((((........))))	chr11:62481406-62481670(-)$1	1	234	252	14.8350
.(((((........))))	chr1:16891201-16891515(-)$1	1	225	243	13.9986

#PSSM
! : 0.11	c : 0.11	e : 0.11	d : 0.09	g : 0.09	: : 0.08	" : 0.08	b : 0.08	f : 0.08	i : 0.03	[ : 0.03	# : 0.01	h : 0.01	F : 0.01	C : 0.01	
e : 0.21	! : 0.13	[ : 0.11	g : 0.09	" : 0.08	d : 0.06	: : 0.06	b : 0.04	f : 0.04	i : 0.03	c : 0.03	# : 0.01	h : 0.01	F : 0.01	a : 0.01	
d : 0.36	e : 0.21	g : 0.09	[ : 0.06	! : 0.04	f : 0.04	" : 0.03	b : 0.03	i : 0.03	c : 0.03	# : 0.01	h : 0.01	
d : 0.32	c : 0.18	e : 0.18	g : 0.08	[ : 0.04	f : 0.04	! : 0.03	i : 0.03	# : 0.01	h : 0.01	b : 0.01	a : 0.01	
d : 0.32	c : 0.18	e : 0.16	b : 0.08	[ : 0.08	f : 0.04	g : 0.04	i : 0.03	h : 0.01	! : 0.01	
d : 0.32	c : 0.18	e : 0.16	a : 0.09	b : 0.08	f : 0.04	g : 0.04	i : 0.03	h : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.32	c : 0.18	e : 0.16	a : 0.09	b : 0.08	f : 0.04	g : 0.04	i : 0.03	h : 0.01	
d : 0.32	c : 0.18	e : 0.18	b : 0.09	f : 0.04	] : 0.04	g : 0.04	i : 0.03	h : 0.01	2 : 0.01	
d : 0.34	c : 0.19	e : 0.18	g : 0.09	2 : 0.04	f : 0.04	i : 0.03	h : 0.01	b : 0.01	a : 0.01	
d : 0.34	e : 0.19	2 : 0.11	g : 0.09	] : 0.08	f : 0.04	c : 0.03	i : 0.03	: : 0.01	h : 0.01	4 : 0.01	

#score	838.8887871726133
#seq	61
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_transcript_m2_run2.txt

#BEAR
beeeeeooooooeeeee	chr18:43669431-43669704(-)$1	273	135	152	12.7382
:eeeeeooooooeeeee	chrM:12069-12280(+)$1	211	171	188	12.2541
d[ddddoooooodddd3	chr2:20192610-20192904(-)$1	294	41	58	12.6043
##eeeeennnnneeeee	chr1:173835915-173836165(-)$1	250	114	131	7.9881
ggggggooooooggggg	chr21:44268652-44268900(-)$1	248	5	22	9.8037
(eeeeeooooooeeeee	chr10:5005580-5005821(+)$1	241	193	210	12.3350
""ddddoooooodddd2	chr16:50583734-50583987(+)$1	253	117	134	12.7162
d[ddddoooooodddd]	chr13:113767732-113768003(+)$1	271	43	60	12.5788
d[ddddoooooodddd]	chr17:94349-94627(-)$1	278	168	185	12.5788
!!eeeeennnnneeeee	chr4:83816906-83817165(-)$1	259	218	235	8.0768
b[ddddoooooodddd]	chr3:33038273-33038540(-)$1	267	23	40	12.6849
ddddddoooooodddd2	chr12:123997900-123998178(-)$1	278	21	38	12.1039
:eeeeeooooooeeeee	chrM:12181-12413(+)$1	232	59	76	12.2541
$$ddddoooooodddd2	chr17:164477-164717(-)$1	240	191	208	12.3525
eeecccooooooccc22	chrX:153063683-153063964(+)$1	281	206	223	10.1780
ggddddoooooodddd8	chrM:1452-1654(+)$1	202	158	175	11.8727
ff[cccoooooocccff	chr12:123994542-123994824(-)$1	282	144	161	9.5012
bbddddoooooodddd2	chrX:68892277-68892482(+)$1	205	73	90	12.0052
:eeeeeooooooeeeee	chrM:12080-12308(+)$1	228	160	177	12.2541
:eeeeeooooooeeeee	chr16:74506148-74506403(-)$1	255	1	18	12.2541
[eeeeeooooooeeeee	chrX:132669918-132670156(-)$1	238	50	67	12.8515
ceeeeeooooooeeeee	chr17:18965284-18965549(+)$1	265	67	84	12.7549
Ceeeeeooooooeeeee	chr11:66384651-66384890(+)$1	239	193	210	12.0867
"eeeeeooooooeeeee	chr7:158055950-158056222(-)$1	272	33	50	12.9761
ggddddoooooodddd8	chrM:1454-1664(+)$1	210	156	173	11.8727
b[ddddoooooodddd]	chr11:76594342-76594556(+)$1	214	87	104	12.6849
d[ddddoooooodddd]	chr3:52722819-52723070(+)$1	251	43	60	12.5788
Deeeeeooooooeeeee	chr19:23507461-23507708(-)$1	247	211	228	12.1010
beeeeeooooooeeeee	chr8:77557719-77557950(-)$1	231	57	74	12.7382
!!ddddoooooodddd]	chr8:9629682-9629968(+)$1	286	170	187	12.8975
:eeeeeooooooeeeee	chr12:123994624-123994920(-)$1	296	240	257	12.2541
::ddddooooooddddg	chrX:132669837-132670063(-)$1	226	120	137	10.7309
"eeeeeooooooeeeee	chr1:12644496-12644773(-)$1	277	81	98	12.9761
b[ddddoooooodddd]	chr11:76594356-76594564(+)$1	208	73	90	12.6849
ceeeeeooooooeeeee	chr19:23507649-23507906(-)$1	257	202	219	12.7549
[eeeeeooooooeeeee	chr6:158993834-158994103(+)$1	269	25	42	12.8515
cc[cccooooooccc]c	chr16:81499130-81499397(+)$1	267	81	98	9.7718
##ddddoooooodddd5	chr17:57721630-57721899(+)$1	269	25	42	12.0246
hhddddoooooodddd:	chr16:81547155-81547394(+)$1	239	128	145	10.8623
$$ddddoooooodddd2	chr17:164426-164677(-)$1	251	151	168	12.3525
deeeeeooooooeeeee	chr19:23507344-23507627(-)$1	283	130	147	12.6321
""ddddoooooodddd3	chr16:81490343-81490564(+)$1	221	32	49	12.8586
$$$cccooooooccc44	chr1:173835358-173835577(-)$1	219	103	120	9.8200
ffddddoooooodddd:	chr3:53870328-53870585(-)$1	257	53	70	11.0984
[eeeeeooooooeeeee	chr12:123998110-123998381(-)$1	271	224	241	12.8515
:eeeeeooooooeeeee	chr19:23507110-23507355(-)$1	245	113	130	12.2541
[eeeeeooooooeeeee	chr21:45945120-45945506(+)$1	386	170	187	12.8515

#otherMatches

#Seq PSSM
GGUCAGCGUGAACUGAU	chr18:43669431-43669704(-)$1	273	135	152	12.7382
CCAUGUCUAACAACAUG	chrM:12069-12280(+)$1	211	171	188	12.2541
AAUUUCUCACCUGAAAA	chr2:20192610-20192904(-)$1	294	41	58	12.6043
GACAGAAGGGAUUUCUG	chr1:173835915-173836165(-)$1	250	114	131	7.9881
UGUGCUGUGUGAGgugc	chr21:44268652-44268900(-)$1	248	5	22	9.8037
GCUGACCAGGUUGUCAG	chr10:5005580-5005821(+)$1	241	193	210	12.3350
AAGGCAGAGCUGUGCUG	chr16:50583734-50583987(+)$1	253	117	134	12.7162
guaccucgucccagguc	chr13:113767732-113768003(+)$1	271	43	60	12.5788
UGCUGGAAAGUCCCAGG	chr17:94349-94627(-)$1	278	168	185	12.5788
UUGAAUGUUUUUCGUUU	chr4:83816906-83817165(-)$1	259	218	235	8.0768
UGAGGGAUUCUACCCUG	chr3:33038273-33038540(-)$1	267	23	40	12.6849
ACUUCACAUCGAUGAAG	chr12:123997900-123998178(-)$1	278	21	38	12.1039
CCAUGUCUAACAACAUG	chrM:12181-12413(+)$1	232	59	76	12.2541
GACUACAGGUCAGUGGA	chr17:164477-164717(-)$1	240	191	208	12.3525
GGCGGCACCCCAGCCCU	chrX:153063683-153063964(+)$1	281	206	223	10.1780
UAGCUUAACACAAAGCA	chrM:1452-1654(+)$1	202	158	175	11.8727
CCCGGCUUGGUUGCCGG	chr12:123994542-123994824(-)$1	282	144	161	9.5012
cugaucucgucugaucu	chrX:68892277-68892482(+)$1	205	73	90	12.0052
CCAUGUCUAACAACAUG	chrM:12080-12308(+)$1	228	160	177	12.2541
CAUCAGAUAUUACUGAU	chr16:74506148-74506403(-)$1	255	1	18	12.2541
CUUCCUCGAUAAAGGGA	chrX:132669918-132670156(-)$1	238	50	67	12.8515
cguugcuuggcugcaac	chr17:18965284-18965549(+)$1	265	67	84	12.7549
ACCCAGCGGAAAUUGGG	chr11:66384651-66384890(+)$1	239	193	210	12.0867
UGGGGUGAGGAAGCCCC	chr7:158055950-158056222(-)$1	272	33	50	12.9761
UAGCUUAACACAAAGCA	chrM:1454-1664(+)$1	210	156	173	11.8727
gucAGUUUCAUCACUGU	chr11:76594342-76594556(+)$1	214	87	104	12.6849
GAUCAGAGACUGCUGAG	chr3:52722819-52723070(+)$1	251	43	60	12.5788
ugaggugagaggaucuc	chr19:23507461-23507708(-)$1	247	211	228	12.1010
ccuaugcauuuauauag	chr8:77557719-77557950(-)$1	231	57	74	12.7382
cagauaggcuuauauua	chr8:9629682-9629968(+)$1	286	170	187	12.8975
CCCGGCUUGGUUGCCGG	chr12:123994624-123994920(-)$1	296	240	257	12.2541
GAUUGUCCUUUUGCAAA	chrX:132669837-132670063(-)$1	226	120	137	10.7309
GGGGCCCUAAAUGGCUU	chr1:12644496-12644773(-)$1	277	81	98	12.9761
gucAGUUUCAUCACUGU	chr11:76594356-76594564(+)$1	208	73	90	12.6849
cgcucuaugaaaagggc	chr19:23507649-23507906(-)$1	257	202	219	12.7549
GAAGUUGUGGAGGACUU	chr6:158993834-158994103(+)$1	269	25	42	12.8515
CGAUUGAAUGAACGAAU	chr16:81499130-81499397(+)$1	267	81	98	9.7718
acccagcaaacAUUGGC	chr17:57721630-57721899(+)$1	269	25	42	12.0246
GAUGGGUCAAUUCCCAG	chr16:81547155-81547394(+)$1	239	128	145	10.8623
GACUACAGGUCAGUGGA	chr17:164426-164677(-)$1	251	151	168	12.3525
ugaggugagaggaucuc	chr19:23507344-23507627(-)$1	283	130	147	12.6321
AAGGCCCACAGUGGCCA	chr16:81490343-81490564(+)$1	221	32	49	12.8586
AAUCAUGAAGAGAUGUA	chr1:173835358-173835577(-)$1	219	103	120	9.8200
AUGccugagggaaggug	chr3:53870328-53870585(-)$1	257	53	70	11.0984
ACUUCACAUCGAUGAAG	chr12:123998110-123998381(-)$1	271	224	241	12.8515
AGCGCUGAAGAGGGUGC	chr19:23507110-23507355(-)$1	245	113	130	12.2541
UAUUCUGUGCUGGGAGU	chr21:45945120-45945506(+)$1	386	170	187	12.8515

#DB
)(((((......)))))	chr18:43669431-43669704(-)$1	1	135	152	12.7382
.(((((......)))))	chrM:12069-12280(+)$1	1	171	188	12.2541
(.((((......)))).	chr2:20192610-20192904(-)$1	1	41	58	12.6043
..(((((.....)))))	chr1:173835915-173836165(-)$1	1	114	131	7.9881
((((((......)))))	chr21:44268652-44268900(-)$1	1	5	22	9.8037
.(((((......)))))	chr10:5005580-5005821(+)$1	1	193	210	12.3350
..((((......)))).	chr16:50583734-50583987(+)$1	1	117	134	12.7162
(.((((......)))).	chr13:113767732-113768003(+)$1	1	43	60	12.5788
(.((((......)))).	chr17:94349-94627(-)$1	1	168	185	12.5788
..(((((.....)))))	chr4:83816906-83817165(-)$1	1	218	235	8.0768
(.((((......)))).	chr3:33038273-33038540(-)$1	1	23	40	12.6849
((((((......)))).	chr12:123997900-123998178(-)$1	1	21	38	12.1039
.(((((......)))))	chrM:12181-12413(+)$1	1	59	76	12.2541
..((((......)))).	chr17:164477-164717(-)$1	1	191	208	12.3525
((((((......)))..	chrX:153063683-153063964(+)$1	1	206	223	10.1780
((((((......)))).	chrM:1452-1654(+)$1	1	158	175	11.8727
((.(((......)))))	chr12:123994542-123994824(-)$1	1	144	161	9.5012
((((((......)))).	chrX:68892277-68892482(+)$1	1	73	90	12.0052
.(((((......)))))	chrM:12080-12308(+)$1	1	160	177	12.2541
.(((((......)))))	chr16:74506148-74506403(-)$1	1	1	18	12.2541
.(((((......)))))	chrX:132669918-132670156(-)$1	1	50	67	12.8515
((((((......)))))	chr17:18965284-18965549(+)$1	1	67	84	12.7549
)(((((......)))))	chr11:66384651-66384890(+)$1	1	193	210	12.0867
.(((((......)))))	chr7:158055950-158056222(-)$1	1	33	50	12.9761
((((((......)))).	chrM:1454-1664(+)$1	1	156	173	11.8727
(.((((......)))).	chr11:76594342-76594556(+)$1	1	87	104	12.6849
(.((((......)))).	chr3:52722819-52723070(+)$1	1	43	60	12.5788
)(((((......)))))	chr19:23507461-23507708(-)$1	1	211	228	12.1010
((((((......)))))	chr8:77557719-77557950(-)$1	1	57	74	12.7382
..((((......)))).	chr8:9629682-9629968(+)$1	1	170	187	12.8975
.(((((......)))))	chr12:123994624-123994920(-)$1	1	240	257	12.2541
..((((......))))(	chrX:132669837-132670063(-)$1	1	120	137	10.7309
.(((((......)))))	chr1:12644496-12644773(-)$1	1	81	98	12.9761
(.((((......)))).	chr11:76594356-76594564(+)$1	1	73	90	12.6849
)(((((......)))))	chr19:23507649-23507906(-)$1	1	202	219	12.7549
.(((((......)))))	chr6:158993834-158994103(+)$1	1	25	42	12.8515
((.(((......))).)	chr16:81499130-81499397(+)$1	1	81	98	9.7718
..((((......)))).	chr17:57721630-57721899(+)$1	1	25	42	12.0246
))((((......)))).	chr16:81547155-81547394(+)$1	1	128	145	10.8623
..((((......)))).	chr17:164426-164677(-)$1	1	151	168	12.3525
)(((((......)))))	chr19:23507344-23507627(-)$1	1	130	147	12.6321
..((((......)))).	chr16:81490343-81490564(+)$1	1	32	49	12.8586
...(((......)))..	chr1:173835358-173835577(-)$1	1	103	120	9.8200
))((((......)))).	chr3:53870328-53870585(-)$1	1	53	70	11.0984
.(((((......)))))	chr12:123998110-123998381(-)$1	1	224	241	12.8515
.(((((......)))))	chr19:23507110-23507355(-)$1	1	113	130	12.2541
.(((((......)))))	chr21:45945120-45945506(+)$1	1	170	187	12.8515

#PSSM
: : 0.14	b : 0.12	d : 0.12	" : 0.08	[ : 0.08	g : 0.06	$ : 0.06	c : 0.06	# : 0.04	! : 0.04	f : 0.04	( : 0.02	e : 0.02	C : 0.02	D : 0.02	h : 0.02	
e : 0.44	[ : 0.14	g : 0.06	$ : 0.06	# : 0.04	" : 0.04	! : 0.04	f : 0.04	d : 0.02	b : 0.02	: : 0.02	c : 0.02	h : 0.02	
e : 0.48	d : 0.42	[ : 0.04	g : 0.02	$ : 0.02	
e : 0.46	d : 0.42	c : 0.08	g : 0.02	
e : 0.46	d : 0.42	c : 0.08	g : 0.02	
e : 0.46	d : 0.42	c : 0.08	g : 0.02	
o : 0.95	e : 0.04	
o : 0.95	n : 0.04	
o : 0.95	n : 0.04	
o : 0.95	n : 0.04	
o : 0.95	n : 0.04	
o : 0.95	n : 0.04	
e : 0.46	d : 0.42	c : 0.08	g : 0.02	
e : 0.46	d : 0.42	c : 0.08	g : 0.02	
e : 0.46	d : 0.42	c : 0.08	g : 0.02	
e : 0.46	d : 0.42	g : 0.02	2 : 0.02	f : 0.02	] : 0.02	4 : 0.02	
e : 0.46	] : 0.14	2 : 0.12	3 : 0.04	g : 0.04	8 : 0.04	: : 0.04	f : 0.02	c : 0.02	5 : 0.02	4 : 0.02	

#score	560.3088781658727
#seq	47
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_transcript_m1_run2.txt

#BEAR
===========[cccnnnnnccc]===========2	chr10:103867998-103868266(-)$1	268	170	206	20.7760
============================22ccc]cc	chr6:16266620-16266833(+)$1	213	89	125	15.0901
a[ggggggg[a!!ccclllccc22a]ggggggg]a:	chr22:50013587-50013813(-)$1	226	122	158	13.7044
dd"""eeeee!!cccnnnnnccc22eeeee4444dd	chr6:26123453-26123701(-)$1	248	207	243	13.9421
[bb"""ggggggg[annnnna]gggggggbb]bb]g	chr3:128211736-128211977(+)$1	241	94	130	14.2926
============[bbnnnnnbb]============]	chr12:6619566-6619781(+)$1	215	2	38	20.6204
ggggccc!!a[ddddnnnnndddd]a333ccc]ggg	chr7:914016-914315(+)$1	299	53	89	14.4455
==========!!cccnnnnnccc]==========:J	chr22:45737281-45737635(+)$1	354	96	132	18.6357
ccciiiiiiiii[bbnnnnnbb]iiiiiiiii::::	chr22:50032197-50032445(-)$1	248	181	217	13.6460
iiiiiiiiiccc[bbmmmmbb]ccc22iiiiiiiii	chr19:932958-933220(+)$1	262	151	187	14.5205
ceeeee!!a"""cccnnnnnccc]a22eeeee333c	chr16:47671050-47671394(+)$1	344	110	146	14.9197
d"""ccc[bb!!cccnnnnnccc]bb]ccc333ddd	chr19:18861644-18862015(+)$1	371	143	179	14.9834
===============oooooo===============	chr11:62360886-62361137(-)$1	251	172	208	20.5194
e[ccc[ccc[bb[bbnnnnnbb]bb]ccc]ccc]ee	chr19:41889442-41889750(+)$1	308	209	245	13.4423
dd!!===========oooooo===========22dd	chr3:48221769-48221984(-)$1	215	103	139	18.5712
##ggggggg####cccmmmmcccggggggg22ccc2	chr15:27446563-27446842(+)$1	279	198	234	13.3813
""a"""bb"""ddddnnnnndddd333bb]a]dddd	chr19:2232080-2232359(+)$1	279	123	159	14.6977
eeee!!iiiiiiiiinnnnniiiiiiiii]eeeee4	chr19:5043427-5043832(+)$1	405	203	239	15.9620
========"""fffffflllffffff]=========	chr17:73823401-73823770(-)$1	369	74	110	15.6793
iiiiiii[bb[a[bblllbb]a]bb]iiiiiiiii4	chr19:799046-799312(+)$1	266	215	251	14.3196
============cccmmmmccc]============d	chr10:103342184-103342480(-)$1	296	216	252	18.4475
eeee[ggggggg[bbnnnnnbb]ggggggg]eeeee	chr9:139559599-139559909(+)$1	310	244	280	14.1857
===="""eeeee[cccmmmmccceeeee========	chr16:18794305-18794533(-)$1	228	10	46	13.9655
ee===========!!bblllbb22===========:	chr3:50367443-50367737(-)$1	294	46	82	16.0827
====####ccc[bboooooobb]ccc==========	chr19:1651895-1652126(-)$1	231	19	55	16.8229
========="""cccooooooccc4444========	chr7:100171562-100171820(-)$1	258	60	96	19.8564
[a[============lll============22a]a2	chr7:5569656-5569991(-)$1	335	50	86	17.6228
eccc[gggggggcccnnnnnccc22gggggggccc:	chr19:940537-940778(+)$1	241	69	105	14.5891
ii[bb[==========mmmm==========bb22ii	chr6:13680224-13680432(-)$1	208	57	93	16.1420
d!!a[ccc"""ddddnnnnndddd333ccc]a]ddd	chr17:46628023-46628315(+)$1	292	36	72	14.9118
ee####bb####cccooooooccc333bb333eeee	chr22:50039134-50039372(-)$1	238	85	121	15.1467
==========!!aqqqqqqqqa22===========f	chr22:50023706-50023964(-)$1	258	153	189	14.8346
==========####bbmmmmbb4444==========	chr15:91463396-91463693(+)$1	297	96	132	17.4782
ggggg==========oooooo==========333gg	chr10:101996707-101996935(-)$1	228	48	84	19.2445
===============oooooo===============	chr7:123180736-123180989(-)$1	253	23	59	20.5194
c"""===========nnnnn===========333cc	chr16:88992669-88992931(-)$1	262	145	181	20.4367
===========[bboooooobb]============:	chr18:12328905-12329184(-)$1	279	49	85	18.7048
ddd[ggggggg!!aaooooooa]a22gggggggddd	chr17:62501969-62502234(-)$1	265	109	145	14.4177
:==========[cccmmmmccc]==========:FF	chrM:14366-14575(-)$1	209	74	110	14.9598
iiiiiiiii"""ddddooooooddddiiiiiiiii:	chr22:49982415-49982672(-)$1	257	53	89	15.1590
iiiiiiiii[eeeeennnnneeeee333iiiiiiii	chr20:61560157-61560423(-)$1	266	191	227	16.5673
gg[a[a!!a!!cccooooooccc22a22a]a]gggg	chr12:56632208-56632445(-)$1	237	85	121	15.1668
ff"""ccc"""cccannnnna]ccc]ccc]ffffff	chr19:2426206-2426436(-)$1	230	129	165	14.8707
===========ddddnnnnndddd22==========	chr16:67862274-67862503(-)$1	229	30	66	18.8940
fff[a[aa"""ddddoooooodddd333a]a]a]ff	chr16:85669107-85669328(+)$1	221	180	216	14.1770
$$$$bb[bb"""cccnnnnnccc4444bb]bb333c	chr19:893458-893690(+)$1	232	74	110	14.7705
========!!ccc[annnnna]ccc22=========	chr1:1155398-1155670(-)$1	272	72	108	19.1649
ii[bb[==========mmmm==========bb22ii	chr6:13680196-13680424(-)$1	228	49	85	16.1420
[ccc===========nnnnn===========22ccc	chr13:92000761-92001019(+)$1	258	79	115	19.0809
============cccmmmmccc]=============	chrX:39955950-39956176(-)$1	226	134	170	18.6358
==========[ddddoooooodddd==========:	chr11:67817869-67818147(+)$1	278	29	65	17.5590

#otherMatches

#Seq PSSM
CCUCCGCCACUCUCAGGAUGUGAUGGUGGUGGGGGA	chr10:103867998-103868266(-)$1	268	170	206	20.7760
aagguggcacguccgacgugccaccuuuaagagcug	chr6:16266620-16266833(+)$1	213	89	125	15.0901
guccgaggaggcuggcgaugccuucguccuugguca	chr22:50013587-50013813(-)$1	226	122	158	13.7044
ggccauuuugcuaacucggcguucccggaagaaacc	chr6:26123453-26123701(-)$1	248	207	243	13.9421
GGGACCUGGGCGCGGGGUGGCGGCGCUCACCAGCAG	chr3:128211736-128211977(+)$1	241	94	130	14.2926
UUCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAGU	chr12:6619566-6619781(+)$1	215	2	38	20.6204
UUUACCUUAAGAAUUAUUUAAGUUGUGUUGGGUUAA	chr7:914016-914315(+)$1	299	53	89	14.4455
AAAUUCUCUUCCAUGGCCCACAUUAAGGGAGUUUGC	chr22:45737281-45737635(+)$1	354	96	132	18.6357
CCUUGGGGCUCGUCACAGGCUGCUGAGCCUCAGUUU	chr22:50032197-50032445(-)$1	248	181	217	13.6460
GAGGCCGGGGCCUUGGUGACGUGGUGACUUGGCCUC	chr19:932958-933220(+)$1	262	151	187	14.5205
cuccaguugucuguguaccucacucuucuggacaug	chr16:47671050-47671394(+)$1	344	110	146	14.9197
GGAACACUGUAACCUGGGAAAGGAGCUGUGACAUGG	chr19:18861644-18862015(+)$1	371	143	179	14.9834
GGGGAGGGGGGCGUGCACUGCCAUGUCuuuuuuuuu	chr11:62360886-62361137(-)$1	251	172	208	20.5194
GGGGGCAGGGGCCGCCUCCCGCCGUGCCUUCCUGCU	chr19:41889442-41889750(+)$1	308	209	245	13.4423
uuaagggcuuucuggcaaaaaccggaaagccugcga	chr3:48221769-48221984(-)$1	215	103	139	18.5712
UAUUACACAGCAUCCCUAUAGGGUGUGUAGGAGCUG	chr15:27446563-27446842(+)$1	279	198	234	13.3813
UUGAUAGGAACCCUAAAAACUAGGAUACCCCCUCCU	chr19:2232080-2232359(+)$1	279	123	159	14.6977
AUCAGAGUGGGGUGUCCACCAUAUCCUGCGUGGUGU	chr19:5043427-5043832(+)$1	405	203	239	15.9620
UGGCCUUCCUGUUCCAGCCACUGGGGUGGGGGCCAG	chr17:73823401-73823770(-)$1	369	74	110	15.6793
UUUCUCUAGCGGGGCCUCGUGCAGCCAGAGGGAGCC	chr19:799046-799312(+)$1	266	215	251	14.3196
AUUCAAUUCUAGACUGAUUGGUGUUAGGAUUGGGUU	chr10:103342184-103342480(-)$1	296	216	252	18.4475
GGGCGUCCCGGGGUGGUUUUCAGCCUGGGGGGCUUG	chr9:139559599-139559909(+)$1	310	244	280	14.1857
AGCGCCCUUAACCACUGAUGAGUGUUGAUGUUUUUC	chr16:18794305-18794533(-)$1	228	10	46	13.9655
GACCCUGCAAACAGAACAGGGUCAUGUUUGCAGGGG	chr3:50367443-50367737(-)$1	294	46	82	16.0827
GUGGAGGAGCCCGGAGCUCGCCAGGCCCGCGUCGCC	chr19:1651895-1652126(-)$1	231	19	55	16.8229
CCUUGGCCUGCCGGCCUGGCUGCCUCUGGGGUCGAG	chr7:100171562-100171820(-)$1	258	60	96	19.8564
GCGCGCUCCGGGGGUGCCGCUCUCGGGGCGGGGGCA	chr7:5569656-5569991(-)$1	335	50	86	17.6228
CGGGUGCUCUAGGCAGAUGGUGCAGCUGGGGCCUUU	chr19:940537-940778(+)$1	241	69	105	14.5891
UGaagaguuuuuugguaaaaacuggaaaaccugcca	chr6:13680224-13680432(-)$1	208	57	93	16.1420
GGGGGCUGGUAGUUGGAGGGCAGCGCGUAGGCAUUC	chr17:46628023-46628315(+)$1	292	36	72	14.9118
UUUGCAAGCACUAUGUCACUUCAUCCUCUACUAGCC	chr22:50039134-50039372(-)$1	238	85	121	15.1467
GGUCUCCUCUGGGGACUGAAGCAGGGAGGAGGCCUG	chr22:50023706-50023964(-)$1	258	153	189	14.8346
UGACUCUGGGAGGACAGGGGUGGGGACCCAGAGUUA	chr15:91463396-91463693(+)$1	297	96	132	17.4782
CCUUACAGACAGGCUGACACAGGCUUGUCUGGCCUG	chr10:101996707-101996935(-)$1	228	48	84	19.2445
ugugugugugugugugugugugCACGCGCAUGCGCA	chr7:123180736-123180989(-)$1	253	23	59	20.5194
CGCCAGGUCCCUCGGAGCGCUUGGGGGGCCUUCAGU	chr16:88992669-88992931(-)$1	262	145	181	20.4367
UAAAUUGGAGUCUUGAUAAGAACAUUUUAAUUUGAC	chr18:12328905-12329184(-)$1	279	49	85	18.7048
CGGCGGGGGCUUUGCGGCUUGGACUUGGCCUUUCCG	chr17:62501969-62502234(-)$1	265	109	145	14.4177
UUAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUAUAC	chrM:14366-14575(-)$1	209	74	110	14.9598
CGCACACGGGAACCGGGUCUUGUCGGCUGUGUGUGU	chr22:49982415-49982672(-)$1	257	53	89	15.1590
CAUUACAAAAGUGUACUGUUUACACCUAUUUGUGAU	chr20:61560157-61560423(-)$1	266	191	227	16.5673
GUGGGUGGGAGGGGAGGGUGCCUGGCAGAGCAGCCC	chr12:56632208-56632445(-)$1	237	85	121	15.1668
CCAGGCAGGUGGUCCUCGCUGUGACACUGAGGUGCU	chr19:2426206-2426436(-)$1	230	129	165	14.8707
AAUAUUUCCAGCAUCUUUGUGAUGAUCUGGAGGUAU	chr16:67862274-67862503(-)$1	229	30	66	18.8940
GGUGAGGGAUUUCCGAGGCCACGGGCGGCACGUGAC	chr16:85669107-85669328(+)$1	221	180	216	14.1770
auuagcauggccccugcgcaaggaugacacgcaaau	chr19:893458-893690(+)$1	232	74	110	14.7705
CUUCCCUAACAGCAGAGGCCCGGCUCGUGGGGAGGG	chr1:1155398-1155670(-)$1	272	72	108	19.1649
UGaagaguuuuuugguaaaaacuggaaaaccugcca	chr6:13680196-13680424(-)$1	228	49	85	16.1420
CGCUCCGCGUGGGCUUUGUUAGCCCGCGUGGGCAGC	chr13:92000761-92001019(+)$1	258	79	115	19.0809
AGGGGAGGGCAGCGGGUUGCCGUCUGCUUUCUUUUU	chrX:39955950-39956176(-)$1	226	134	170	18.6358
GGGGGCUGGCAGGCACCCACUUGCCGUUGGCCCCCA	chr11:67817869-67818147(+)$1	278	29	65	17.5590

#DB
(((((((((((.(((.....))).))))))))))).	chr10:103867998-103868266(-)$1	1	170	206	20.7760
))))))))))))))))))))))))))))..))).))	chr6:16266620-16266833(+)$1	1	89	125	15.0901
(.(((((((.(..(((...)))..).))))))).).	chr22:50013587-50013813(-)$1	1	122	158	13.7044
((...(((((..(((.....)))..)))))....))	chr6:26123453-26123701(-)$1	1	207	243	13.9421
.((...(((((((.(.....).))))))))).)).)	chr3:128211736-128211977(+)$1	1	94	130	14.2926
((((((((((((.((.....)).)))))))))))).	chr12:6619566-6619781(+)$1	1	2	38	20.6204
(((((((..(.((((.....)))).)...))).)))	chr7:914016-914315(+)$1	1	53	89	14.4455
((((((((((..(((.....))).)))))))))).)	chr22:45737281-45737635(+)$1	1	96	132	18.6357
)))(((((((((.((.....)).)))))))))....	chr22:50032197-50032445(-)$1	1	181	217	13.6460
((((((((((((.((....)).)))..)))))))))	chr19:932958-933220(+)$1	1	151	187	14.5205
((((((..(...(((.....))).)..)))))...)	chr16:47671050-47671394(+)$1	1	110	146	14.9197
(...(((.((..(((.....))).)).)))...)))	chr19:18861644-18862015(+)$1	1	143	179	14.9834
(((((((((((((((......)))))))))))))))	chr11:62360886-62361137(-)$1	1	172	208	20.5194
(.(((.(((.((.((.....)).)).))).))).))	chr19:41889442-41889750(+)$1	1	209	245	13.4423
((..(((((((((((......)))))))))))..))	chr3:48221769-48221984(-)$1	1	103	139	18.5712
..(((((((....(((....))))))))))..))).	chr15:27446563-27446842(+)$1	1	198	234	13.3813
..(...((...((((.....))))...)).).))))	chr19:2232080-2232359(+)$1	1	123	159	14.6977
((((..(((((((((.....))))))))).))))).	chr19:5043427-5043832(+)$1	1	203	239	15.9620
((((((((...((((((...)))))).)))))))))	chr17:73823401-73823770(-)$1	1	74	110	15.6793
(((((((.((.(.((...)).).)).))))))))).	chr19:799046-799312(+)$1	1	215	251	14.3196
(((((((((((((((....))).)))))))))))))	chr10:103342184-103342480(-)$1	1	216	252	18.4475
((((.(((((((.((.....)).))))))).)))))	chr9:139559599-139559909(+)$1	1	244	280	14.1857
((((...(((((.(((....))))))))))))))))	chr16:18794305-18794533(-)$1	1	10	46	13.9655
))(((((((((((..((...))..))))))))))).	chr3:50367443-50367737(-)$1	1	46	82	16.0827
((((....(((.((......)).)))))))))))))	chr19:1651895-1652126(-)$1	1	19	55	16.8229
(((((((((...(((......)))....))))))))	chr7:100171562-100171820(-)$1	1	60	96	19.8564
.(.((((((((((((...))))))))))))..).).	chr7:5569656-5569991(-)$1	1	50	86	17.6228
)(((.((((((((((.....)))..)))))))))).	chr19:940537-940778(+)$1	1	69	105	14.5891
((.((.((((((((((....))))))))))))..))	chr6:13680224-13680432(-)$1	1	57	93	16.1420
(..(.(((...((((.....))))...))).).)))	chr17:46628023-46628315(+)$1	1	36	72	14.9118
((....((....(((......)))...))...))))	chr22:50039134-50039372(-)$1	1	85	121	15.1467
((((((((((..(........)..))))))))))))	chr22:50023706-50023964(-)$1	1	153	189	14.8346
((((((((((....((....))....))))))))))	chr15:91463396-91463693(+)$1	1	96	132	17.4782
(((((((((((((((......))))))))))...))	chr10:101996707-101996935(-)$1	1	48	84	19.2445
(((((((((((((((......)))))))))))))))	chr7:123180736-123180989(-)$1	1	23	59	20.5194
(...(((((((((((.....)))))))))))...))	chr16:88992669-88992931(-)$1	1	145	181	20.4367
(((((((((((.((......)).)))))))))))).	chr18:12328905-12329184(-)$1	1	49	85	18.7048
(((.(((((((..((......).)..))))))))))	chr17:62501969-62502234(-)$1	1	109	145	14.4177
.((((((((((.(((....))).)))))))))).))	chrM:14366-14575(-)$1	1	74	110	14.9598
(((((((((...((((......))))))))))))).	chr22:49982415-49982672(-)$1	1	53	89	15.1590
(((((((((.(((((.....)))))...))))))))	chr20:61560157-61560423(-)$1	1	191	227	16.5673
((.(.(..(..(((......)))..)..).).))))	chr12:56632208-56632445(-)$1	1	85	121	15.1668
((...(((...((((.....).))).))).))))))	chr19:2426206-2426436(-)$1	1	129	165	14.8707
(((((((((((((((.....))))..))))))))))	chr16:67862274-67862503(-)$1	1	30	66	18.8940
(((.(.((...((((......))))...).).).))	chr16:85669107-85669328(+)$1	1	180	216	14.1770
....((.((...(((.....)))....)).))...)	chr19:893458-893690(+)$1	1	74	110	14.7705
((((((((..(((.(.....).)))..)))))))))	chr1:1155398-1155670(-)$1	1	72	108	19.1649
((.((.((((((((((....))))))))))))..))	chr6:13680196-13680424(-)$1	1	49	85	16.1420
.((((((((((((((.....)))))))))))..)))	chr13:92000761-92001019(+)$1	1	79	115	19.0809
(((((((((((((((....))).)))))))))))))	chrX:39955950-39956176(-)$1	1	134	170	18.6358
((((((((((.((((......)))))))))))))).	chr11:67817869-67818147(+)$1	1	29	65	17.5590

#PSSM
= : 0.35	i : 0.11	e : 0.11	d : 0.09	[ : 0.05	g : 0.05	c : 0.05	f : 0.03	a : 0.01	# : 0.01	" : 0.01	: : 0.01	$ : 0.01	
= : 0.37	i : 0.11	e : 0.09	d : 0.05	g : 0.05	c : 0.05	" : 0.05	[ : 0.03	f : 0.03	b : 0.01	# : 0.01	a : 0.01	! : 0.01	$ : 0.01	
= : 0.39	g : 0.07	" : 0.07	c : 0.07	i : 0.07	[ : 0.07	e : 0.05	! : 0.03	b : 0.01	a : 0.01	# : 0.01	d : 0.01	f : 0.01	$ : 0.01	
= : 0.41	" : 0.11	i : 0.09	g : 0.07	e : 0.05	c : 0.05	b : 0.03	a : 0.03	[ : 0.03	! : 0.01	# : 0.01	$ : 0.01	
= : 0.43	" : 0.09	i : 0.09	g : 0.07	[ : 0.07	c : 0.05	b : 0.05	# : 0.03	e : 0.01	! : 0.01	a : 0.01	
= : 0.45	g : 0.09	i : 0.09	c : 0.07	[ : 0.07	" : 0.05	e : 0.03	# : 0.03	! : 0.01	a : 0.01	b : 0.01	
= : 0.49	g : 0.11	i : 0.11	c : 0.09	! : 0.03	b : 0.03	e : 0.01	" : 0.01	# : 0.01	a : 0.01	[ : 0.01	
= : 0.49	g : 0.11	i : 0.09	! : 0.05	c : 0.05	b : 0.05	e : 0.03	[ : 0.03	# : 0.01	a : 0.01	
= : 0.45	g : 0.11	i : 0.09	" : 0.09	b : 0.05	e : 0.03	! : 0.03	a : 0.03	c : 0.03	# : 0.01	
= : 0.43	" : 0.17	g : 0.07	[ : 0.05	e : 0.03	i : 0.03	c : 0.03	b : 0.03	# : 0.03	! : 0.03	a : 0.01	
= : 0.35	" : 0.17	! : 0.09	g : 0.07	[ : 0.05	c : 0.05	# : 0.05	i : 0.03	e : 0.03	a : 0.01	b : 0.01	
= : 0.27	! : 0.11	d : 0.11	[ : 0.07	c : 0.07	" : 0.07	g : 0.05	# : 0.05	i : 0.03	e : 0.03	b : 0.01	f : 0.01	a : 0.01	
c : 0.29	= : 0.21	[ : 0.13	d : 0.13	! : 0.03	# : 0.03	b : 0.03	g : 0.01	i : 0.01	f : 0.01	a : 0.01	e : 0.01	
c : 0.33	= : 0.19	b : 0.15	d : 0.13	[ : 0.03	i : 0.01	f : 0.01	! : 0.01	q : 0.01	# : 0.01	a : 0.01	e : 0.01	
c : 0.29	= : 0.19	b : 0.13	d : 0.13	a : 0.07	o : 0.05	i : 0.01	f : 0.01	! : 0.01	q : 0.01	e : 0.01	
n : 0.43	o : 0.23	m : 0.07	= : 0.05	c : 0.05	l : 0.03	b : 0.03	f : 0.01	q : 0.01	d : 0.01	
n : 0.43	o : 0.25	m : 0.17	l : 0.05	= : 0.01	f : 0.01	b : 0.01	q : 0.01	
n : 0.43	o : 0.25	m : 0.17	l : 0.09	= : 0.01	q : 0.01	
n : 0.43	o : 0.25	m : 0.17	l : 0.05	= : 0.03	b : 0.01	q : 0.01	
n : 0.43	o : 0.25	m : 0.09	c : 0.07	= : 0.03	b : 0.03	l : 0.03	q : 0.01	
c : 0.27	o : 0.19	b : 0.17	= : 0.11	d : 0.07	a : 0.05	i : 0.01	f : 0.01	] : 0.01	q : 0.01	e : 0.01	
c : 0.31	= : 0.19	b : 0.15	d : 0.11	] : 0.07	a : 0.05	i : 0.01	f : 0.01	o : 0.01	e : 0.01	
c : 0.29	] : 0.21	= : 0.19	d : 0.13	2 : 0.05	g : 0.01	i : 0.01	f : 0.01	4 : 0.01	e : 0.01	
= : 0.29	d : 0.13	2 : 0.11	c : 0.11	] : 0.07	g : 0.05	i : 0.03	b : 0.03	e : 0.03	4 : 0.03	f : 0.01	a : 0.01	
= : 0.37	2 : 0.09	c : 0.07	g : 0.05	b : 0.05	3 : 0.05	4 : 0.05	d : 0.05	a : 0.03	i : 0.03	e : 0.03	] : 0.01	f : 0.01	
= : 0.39	2 : 0.09	3 : 0.09	] : 0.07	g : 0.07	4 : 0.05	e : 0.03	a : 0.03	i : 0.03	b : 0.01	f : 0.01	c : 0.01	d : 0.01	
= : 0.45	g : 0.11	3 : 0.11	i : 0.07	2 : 0.07	e : 0.03	] : 0.03	c : 0.03	4 : 0.03	
= : 0.49	g : 0.11	i : 0.09	c : 0.07	e : 0.05	3 : 0.05	b : 0.05	4 : 0.01	2 : 0.01	
= : 0.50	g : 0.11	i : 0.11	c : 0.07	b : 0.05	e : 0.03	a : 0.03	2 : 0.01	3 : 0.01	
= : 0.50	] : 0.13	g : 0.09	i : 0.09	c : 0.05	e : 0.03	2 : 0.01	b : 0.01	3 : 0.01	
= : 0.45	i : 0.09	b : 0.07	c : 0.05	g : 0.05	a : 0.05	e : 0.03	3 : 0.03	2 : 0.03	] : 0.03	4 : 0.01	f : 0.01	
= : 0.39	i : 0.09	] : 0.07	3 : 0.07	c : 0.05	g : 0.05	e : 0.05	2 : 0.05	b : 0.05	4 : 0.01	a : 0.01	f : 0.01	
= : 0.37	3 : 0.09	c : 0.07	i : 0.07	2 : 0.07	g : 0.05	e : 0.05	] : 0.03	a : 0.03	4 : 0.01	b : 0.01	: : 0.01	d : 0.01	f : 0.01	
= : 0.35	] : 0.09	i : 0.07	3 : 0.07	d : 0.07	2 : 0.05	c : 0.05	e : 0.05	g : 0.03	: : 0.03	4 : 0.01	b : 0.01	f : 0.01	
= : 0.33	d : 0.11	i : 0.11	c : 0.09	e : 0.07	g : 0.05	a : 0.03	: : 0.03	3 : 0.03	f : 0.03	] : 0.01	F : 0.01	
= : 0.19	: : 0.13	d : 0.13	c : 0.09	g : 0.07	i : 0.07	2 : 0.05	e : 0.05	f : 0.05	4 : 0.03	] : 0.01	J : 0.01	F : 0.01	

#score	834.708513152743
#seq	51
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_CDS_m1_run2.txt

#BEAR
:dddd!!ccc[cccnnnnncccccc]ddddccc!!	chr20:30802969-30803347(+)$1	378	44	79	13.6756
=======[bb[cccnnnnncccbb22=========	chr3:41277121-41277405(+)$1	284	81	116	15.8045
"""ccc"""cccaooooooa]ccc22ccc]ggggg	chr20:30729483-30729724(+)$1	241	14	49	12.8640
dddd!!dddd[cccnnnnnccc22dddd4444ddd	chr15:90349205-90349456(-)$1	251	137	172	14.5840
d[ggggggg"""bbnnnnnbb333ggggggg]ddd	chr8:144940396-144940689(-)$1	293	142	177	15.7111
$$$$$iiiiiiiiinnnnniiiiiiiii]dddd]d	chr6:31895717-31895990(+)$1	273	219	254	13.8744
:bb!!bb[ccccccnnnnnccc]ccc]bb22bb::	chr16:83841534-83841796(+)$1	262	127	162	11.8565
cc!!ggggggg[bbnnnnnbb]ggggggg22ccc:	chr5:135391278-135391532(+)$1	254	199	234	14.3127
d[eeeee####cccnnnnnccc4444eeeee]ddd	chr2:21246450-21246664(-)$1	214	71	106	15.7041
========="""bbnnnnnbb]===========:c	chr14:95053999-95054238(+)$1	239	13	48	15.4306
ee"""eeeee[cccnnnnnccc22eeeee22eeee	chr9:35713147-35713389(-)$1	242	193	228	15.1158
ccc[bb!!aeeeeennnnneeeee22a22bb]ccc	chr19:45412092-45412314(+)$1	222	187	222	12.1724
b"""dddd!!ddddnnnnndddddddd333bb]cc	chr4:88303313-88303615(-)$1	302	144	179	13.0604
gggggg[ccc!!cccmmmmccc]cccggggggg]d	chr2:10927368-10927629(-)$1	261	171	206	11.0136
ffffff!!ccc[bbnnnnnbb]ccc22ffffffdd	chr1:8924040-8924250(-)$1	210	58	93	13.5153
gggggdddd!!cccnnnnnccc22dddd:cccfff	chr9:116835142-116835359(-)$1	217	58	93	13.7333
ffff[ccc!!ddddnnnnndddd333ccc]fffff	chr8:144663340-144663601(-)$1	261	59	94	14.9415
[ffffff"""ddddnnnnndddd333ffffff]dd	chr11:67168143-67168415(-)$1	272	129	164	14.3004
iiiiiiii[cccbbnnnnnbb]ccc]iiiiiiiii	chr2:27435155-27435411(+)$1	256	216	251	15.1114
:::iiiiiiiiibbnnnnnbb4444iiiiiiiii=	chr3:58080563-58080772(+)$1	209	15	50	12.8394
:ccc[ccc!!ddddnnnnndddd22ccc333cccc	chr7:91761017-91761269(-)$1	252	47	82	14.7413
d"""ffffffcccooooooccc]ffffff333ddd	chr16:31202042-31202263(+)$1	221	167	202	11.7404
cc"""ccc"""cccnnnnnccc4444ccc333ccc	chr21:46935805-46936105(-)$1	300	49	84	18.1906
ffff[==========mmmm==========333fff	chr12:58087858-58088207(+)$1	349	80	115	11.4123
ccc[ccc!!a[cccnnnnnccc]a22cccccc]ff	chr7:5567880-5568136(-)$1	256	204	239	16.2271
ccc!!bb"""ddddnnnnndddd]bb]cccdddd:	chr11:115110963-115111218(-)$1	255	56	91	12.4573
[eeeee[ccc[ccclllccc]ccceeeee333a]e	chr17:8169970-8170266(+)$1	296	103	138	11.2498
ggg!!a[bb!!cccmmmmccc4444bb]a22gggg	chr14:24613089-24613339(-)$1	250	117	152	11.3634
ff"""bb####cccnnnnncccbb]ffffffbbii	chr6:31997366-31997645(+)$1	279	193	228	14.2514
!!ffffff"""bboooooobb333ffffff22ddd	chr4:74302798-74303012(+)$1	214	9	44	11.4823
ee]cccdddd[cccnnnnnccc]dddd:eeeeead	chr20:2443259-2443486(-)$1	227	154	189	12.5279
cc[bb$$$$$ddddnnnnndddd333bbccc333c	chr1:236175121-236175338(-)$1	217	68	103	13.7271
:eeeee[ccc[cccnnnnnccc333ccceeeee::	chr2:85554685-85554909(-)$1	224	146	181	14.0139
ee[a"""bbeeeeennnnneeeee]bb]a]eeeee	chr11:71146630-71146905(-)$1	275	49	84	12.4266
eee!!eeeee[cccnnnnnccc]eeeeeeeeeeFF	chr22:24237155-24237437(+)$1	282	25	60	13.5401
c!!ggggggg[cccnnnnncccggggggg22ccc>	chr9:128001600-128001808(-)$1	208	131	166	16.1810
gggg[a[bbeeeeennnnneeeee]bb]a333ggg	chr9:131451704-131451970(+)$1	266	54	89	13.4182
i[ccceeeee[cccooooooccc333eeeee]ccc	chr19:581290-581562(+)$1	272	55	90	12.5346
e[bb[iiiiiiiiinnnnniiiiiiiii]bbeeee	chr1:161193041-161193301(-)$1	260	27	62	14.0895
#dddd!!gggggggnnnnngggggggdddddddd2	chr20:23618303-23618559(-)$1	256	109	144	12.5079
$$$bb[gggggggooooooggggggg]bb4444cc	chr4:155506931-155507169(-)$1	238	14	49	10.4510
eee####ccc[cccooooooccc]ccc4444eeee	chr1:12018534-12018777(+)$1	243	90	125	12.8822
eeee"""ccc[cccooooooccc22ccceeeee::	chr5:135364732-135364976(+)$1	244	125	160	11.0419
b[ffffff!!a[bbnnnnnbb]a22ffffffbb]g	chr3:126260629-126260875(+)$1	246	63	98	13.5904
e"""bb[cccddddnnnnndddd333ccc]bb22e	chr20:17607902-17608127(-)$1	225	105	140	14.2324
d[eeeee[ccccccnnnnnccc333ccc22eeeee	chr1:169076015-169076253(+)$1	238	129	164	16.0508
ffffff==========lll==========333fff	chr12:9242476-9242702(-)$1	226	130	165	12.0906
dd[ccc[bb"""bbnnnnnbb22bb]cccdddd33	chr3:148927866-148928128(-)$1	262	85	120	13.3977
"""ccc$$$$$bb[annnnna]bbccc4444ffff	chr17:79226837-79227122(-)$1	285	192	227	12.1386
[a[bb!!ccc!!bbnnnnnbb22ccc]bbafffff	chr3:98311788-98312062(-)$1	274	117	152	13.9550
ggggggg!!ccc[annnnna]ccc333ggggggg:	chr2:216292825-216293044(-)$1	219	120	155	14.9614
ccbb[ddddccc[annnnna]ccc]ddddbb]ccc	chr17:80044322-80044531(-)$1	209	160	195	12.9996
a!!dddd!!cccooooooccc4444dddd22a]bb	chr15:45007520-45007770(+)$1	250	191	226	10.5959
:eeeeea[ccccccnnnnnccc333ccc]a]eeee	chr12:104324163-104324397(+)$1	234	116	151	15.4455
!ffffffbb!!cccnnnnnccc22bb]ffffff22	chr1:116940409-116940627(+)$1	218	163	198	13.9249
cc[hhhhhhhh[bbnnnnnbb]hhhhhhhh]ccc]	chr17:37071195-37071444(+)$1	249	50	85	11.6470

#otherMatches

#Seq PSSM
UGUCUAAAGUAGCCACGGGGGCACUGAGACGGGAC	chr20:30802969-30803347(+)$1	378	44	79	13.6756
UUCUUUUGGCAGGAGGGGGUCCGCAUGGAAGAAAU	chr3:41277121-41277405(+)$1	284	81	116	15.8045
AGGCUCACACAGGGGAGGACACUGACGGGAGAGGC	chr20:30729483-30729724(+)$1	241	14	49	12.8640
CUCAAGGGCUCCCUGGUGAAGGACAGCCAGUAUGA	chr15:90349205-90349456(-)$1	251	137	172	14.5840
UGGGCGGCGAGAUCCAGGAGAAGCUGCUGUCGGCC	chr8:144940396-144940689(-)$1	293	142	177	15.7111
CAAACGUGAGGCUCCCUGUGGGCUUUGCUCAGGGU	chr6:31895717-31895990(+)$1	273	219	254	13.8744
CCAAGCUGGGCAUCGGGGAGAUGGCCGAGACUGAC	chr16:83841534-83841796(+)$1	262	127	162	11.8565
AUGUCCUGAAGGGAGACAAUCGCUUUAGGUAAUUA	chr5:135391278-135391532(+)$1	254	199	234	14.3127
UUAUUUGCUCUCCCUUGUUGGGUCUACAGAUUGGA	chr2:21246450-21246664(-)$1	214	71	106	15.7041
AGGAGCUGCACAGAGGCUUUCAGCAGCUCCUUCAG	chr14:95053999-95054238(+)$1	239	13	48	15.4306
GCAGGUAUGUGGGCAGAGAGCCAGGCAUGGGGCAU	chr9:35713147-35713389(-)$1	242	193	228	15.1158
ACCCGCGACCGCCUGGACGAGGUGAAGGAGCAGGU	chr19:45412092-45412314(+)$1	222	187	222	12.1724
CCAAGGUUCAUACCUUUGUGGUAGACUGCAGCAAC	chr4:88303313-88303615(-)$1	302	144	179	13.0604
UUGCUCUGCUAAAAGGCUCCUUCAGUGAGCAAGGC	chr2:10927368-10927629(-)$1	261	171	206	11.0136
GGGAGGAUCACACUGAUGAAGCGUGUCCCUCCUUU	chr1:8924040-8924250(-)$1	210	58	93	13.5153
GCGCCGCAGCUGAGGGAAACUCUCCUGCAGGACUU	chr9:116835142-116835359(-)$1	217	58	93	13.7333
GGAGCAGGCUGGGCACUGAGCCCUCCCCUCCUCCU	chr8:144663340-144663601(-)$1	261	59	94	14.9415
AAGCAGUCCUUGGAGACCAUCUGCCUGCUGCUGGC	chr11:67168143-67168415(-)$1	272	129	164	14.3004
UCGCUGGCCAGCCGUGCGUCGCGCUCGCCAGCGGC	chr2:27435155-27435411(+)$1	256	216	251	15.1114
AAACAUGGUGAAGCAGCCAGCCAAGUUCACUGUGG	chr3:58080563-58080772(+)$1	209	15	50	12.8394
AACACGAAUUGAAUUUACUAUUUUUUUCUCUUGUA	chr7:91761017-91761269(-)$1	252	47	82	14.7413
UUAAUUUUUCAGCGGGGAGGCUCGGGGAACAUAGG	chr16:31202042-31202263(+)$1	221	167	202	11.7404
AGUUCCAGUUAUACUCCGUGUACUUCCUGAUCCUG	chr21:46935805-46936105(-)$1	300	49	84	18.1906
CGAAAGAUGGCGGCGGAAACGCUGCUGUCCAGUUU	chr12:58087858-58088207(+)$1	349	80	115	11.4123
UCUUCCAGCCUUCCUUCCUGGGUGAGUGGAGACUG	chr7:5567880-5568136(-)$1	256	204	239	16.2271
CCUUUUCUUCCCUUUUUUUAAGGUGAUGGGCAGAA	chr11:115110963-115111218(-)$1	255	56	91	12.4573
UGUCUGUGCUGUUCGCUGAGGAGCCAGGCCUCGUG	chr17:8169970-8170266(+)$1	296	103	138	11.2498
GGGGAUGCUGUGGCCAAGGCCUCCAAGGAGACUCA	chr14:24613089-24613339(-)$1	250	117	152	11.3634
AUUCCGCAGUACCCAAGUAGGGGCCGUCCCCGGGC	chr6:31997366-31997645(+)$1	279	193	228	14.2514
UAUGUAACAAUGAUUACUUUCUUGGUUGCAGUUGA	chr4:74302798-74303012(+)$1	214	9	44	11.4823
CAAUGGGCAUGCCCCCUCCGGGAAUGCGGCCUCCU	chr20:2443259-2443486(-)$1	227	154	189	12.5279
CCAGUGCAAACCUGGUUAUCAGGGAGACGGCUUCC	chr1:236175121-236175338(-)$1	217	68	103	13.7271
CUGGAGUACGGCCUUCUGCAGGAAACGUCUCCACC	chr2:85554685-85554909(-)$1	224	146	181	14.0139
GCUGUCCACCCCGCACGCCGUGGGCGUCCUGCUGC	chr11:71146630-71146905(-)$1	275	49	84	12.4266
gcccgggACUGAGCCACCCGCUGAGUCCGGCCUCC	chr22:24237155-24237437(+)$1	282	25	60	13.5401
CGGCAUAUUUGCCAAAUAGUGGAAAUGUGAAGUAC	chr9:128001600-128001808(-)$1	208	131	166	16.1810
GCGGGCGCCCGCGCGUGUGGCGUGAGGGGAAGCCG	chr9:131451704-131451970(+)$1	266	54	89	13.4182
UCGUGAGUUCCUCGCAGGGCCGGUCAGAGCUACAC	chr19:581290-581562(+)$1	272	55	90	12.5346
GAGGAGCUGAAGCCCAUUUGGCUUCAGUGUCCCCC	chr1:161193041-161193301(-)$1	260	27	62	14.0895
UGGCCCUGGCCGUGAGCCCCGCGGCCGGCUCCAGU	chr20:23618303-23618559(-)$1	256	109	144	12.5079
AAAGAAGUUACCAAAGAAGUGGUGACCUCCGAAGA	chr4:155506931-155507169(-)$1	238	14	49	10.4510
CGUUUGUGUCCCUGUUCUUCCAGCGGCUCCUGCGG	chr1:12018534-12018777(+)$1	243	90	125	12.8822
GCUCCGGGGCCGCCAGCACGGGUAAGCCGAGCCGC	chr5:135364732-135364976(+)$1	244	125	160	11.0419
CUGGUGGACGACGCGCAUGGCCUGCUCUACUGCUA	chr3:126260629-126260875(+)$1	246	63	98	13.5904
CCAGGCGGAGGCUGACCAGCAGCAGACUCGGUAAG	chr20:17607902-17608127(-)$1	225	105	140	14.2324
CAGGACCGGUGGCAGUUGGUGUAAGUACGGGGUCC	chr1:169076015-169076253(+)$1	238	129	164	16.0508
CUGUGUGGGACUGAGGUGCCUUCAGUUCCUGAACA	chr12:9242476-9242702(-)$1	226	130	165	12.0906
AUUGUGUGACUAGGAUUUACCAUUCCCACAUUGAU	chr3:148927866-148928128(-)$1	262	85	120	13.3977
GGACGGGAAGAUGGCAAGGAGGCACCGGAGGAGGC	chr17:79226837-79227122(-)$1	285	192	227	12.1386
UGACCGACCUGGGCGAGCUGCGAAGGAGGCCGGGC	chr3:98311788-98312062(-)$1	274	117	152	13.9550
UCUGUGCAGACCACAUCGAGCGGUGAGGCACAGGA	chr2:216292825-216293044(-)$1	219	120	155	14.9614
UGGAUGGGGCCCAGAUCCCCCGGGACCCCUCACAG	chr17:80044322-80044531(-)$1	209	160	195	12.9996
CGACAUUGAAGUUGACUUACUGAAGAAUGGAGAGA	chr15:45007520-45007770(+)$1	250	191	226	10.5959
ACCGGCCGCACGCCAUGAGGGCCCUGUGGGUGCUG	chr12:104324163-104324397(+)$1	234	116	151	15.4455
UGACAUUUUGAAGUACCACACUGAGAUAGUGUUUG	chr1:116940409-116940627(+)$1	218	163	198	13.9249
GCUGGGUUUGGCAGGACAGUUUCCAAGCCCUGUCU	chr17:37071195-37071444(+)$1	249	50	85	11.6470

#DB
.((((..(((.(((.....)))))).))))(((..	chr20:30802969-30803347(+)$1	1	44	79	13.6756
(((((((.((.(((.....)))))..)))))))))	chr3:41277121-41277405(+)$1	1	81	116	15.8045
...(((...((((......).)))..))).)))))	chr20:30729483-30729724(+)$1	1	14	49	12.8640
((((..((((.(((.....)))..))))....)))	chr15:90349205-90349456(-)$1	1	137	172	14.5840
(.(((((((...((.....))...))))))).)))	chr8:144940396-144940689(-)$1	1	142	177	15.7111
.....(((((((((.....))))))))).)))).)	chr6:31895717-31895990(+)$1	1	219	254	13.8744
.((..((.((((((.....))).))).))..))..	chr16:83841534-83841796(+)$1	1	127	162	11.8565
((..(((((((.((.....)).)))))))..))).	chr5:135391278-135391532(+)$1	1	199	234	14.3127
(.(((((....(((.....)))....))))).)))	chr2:21246450-21246664(-)$1	1	71	106	15.7041
(((((((((...((.....)).))))))))))).(	chr14:95053999-95054238(+)$1	1	13	48	15.4306
((...(((((.(((.....)))..)))))..))))	chr9:35713147-35713389(-)$1	1	193	228	15.1158
(((.((..((((((.....)))))..)..)).)))	chr19:45412092-45412314(+)$1	1	187	222	12.1724
(...((((..((((.....))))))))...)).))	chr4:88303313-88303615(-)$1	1	144	179	13.0604
((((((.(((..(((....))).)))))))))).)	chr2:10927368-10927629(-)$1	1	171	206	11.0136
((((((..(((.((.....)).)))..))))))))	chr1:8924040-8924250(-)$1	1	58	93	13.5153
)))))((((..(((.....)))..)))).((((((	chr9:116835142-116835359(-)$1	1	58	93	13.7333
((((.(((..((((.....))))...))).)))))	chr8:144663340-144663601(-)$1	1	59	94	14.9415
.((((((...((((.....))))...)))))).))	chr11:67168143-67168415(-)$1	1	129	164	14.3004
((((((((.(((((.....)).))).)))))))))	chr2:27435155-27435411(+)$1	1	216	251	15.1114
...(((((((((((.....))....)))))))))(	chr3:58080563-58080772(+)$1	1	15	50	12.8394
.(((.(((..((((.....))))..)))...)))(	chr7:91761017-91761269(-)$1	1	47	82	14.7413
(...(((((((((......))).))))))...)))	chr16:31202042-31202263(+)$1	1	167	202	11.7404
((...(((...(((.....)))....)))...)))	chr21:46935805-46936105(-)$1	1	49	84	18.1906
((((.((((((((((....))))))))))...)))	chr12:58087858-58088207(+)$1	1	80	115	11.4123
(((.(((..(.(((.....))).)..)))))).))	chr7:5567880-5568136(-)$1	1	204	239	16.2271
(((..((...((((.....)))).)).))))))).	chr11:115110963-115111218(-)$1	1	56	91	12.4573
.(((((.(((.(((...))).))))))))...).)	chr17:8169970-8170266(+)$1	1	103	138	11.2498
(((..(.((..(((....)))....)).)..))))	chr14:24613089-24613339(-)$1	1	117	152	11.3634
((...((....(((.....))))).))))))))))	chr6:31997366-31997645(+)$1	1	193	228	14.2514
..((((((...((......))...))))))..)))	chr4:74302798-74303012(+)$1	1	9	44	11.4823
)).)))((((.(((.....))).)))).(((((((	chr20:2443259-2443486(-)$1	1	154	189	12.5279
((.((.....((((.....))))...)))))...)	chr1:236175121-236175338(-)$1	1	68	103	13.7271
.(((((.(((.(((.....)))...))))))))..	chr2:85554685-85554909(-)$1	1	146	181	14.0139
((.(...(((((((.....))))).)).).)))))	chr11:71146630-71146905(-)$1	1	49	84	12.4266
(((..(((((.(((.....))).))))))))))))	chr22:24237155-24237437(+)$1	1	25	60	13.5401
(..(((((((.(((.....))))))))))..))).	chr9:128001600-128001808(-)$1	1	131	166	16.1810
((((.(.(((((((.....))))).)).)...)))	chr9:131451704-131451970(+)$1	1	54	89	13.4182
(.((((((((.(((......)))...))))).)))	chr19:581290-581562(+)$1	1	55	90	12.5346
(.((.(((((((((.....))))))))).))))))	chr1:161193041-161193301(-)$1	1	27	62	14.0895
.((((..(((((((.....))))))))))))))).	chr20:23618303-23618559(-)$1	1	109	144	12.5079
...((.(((((((......))))))).))....))	chr4:155506931-155507169(-)$1	1	14	49	10.4510
(((....(((.(((......))).)))....))))	chr1:12018534-12018777(+)$1	1	90	125	12.8822
((((...(((.(((......)))..))))))))..	chr5:135364732-135364976(+)$1	1	125	160	11.0419
(.((((((..(.((.....)).)..)))))))).)	chr3:126260629-126260875(+)$1	1	63	98	13.5904
(...((.(((((((.....))))...))).))..)	chr20:17607902-17608127(-)$1	1	105	140	14.2324
(.(((((.((((((.....)))...)))..)))))	chr1:169076015-169076253(+)$1	1	129	164	16.0508
((((((((((((((((...))))))))))...)))	chr12:9242476-9242702(-)$1	1	130	165	12.0906
((.(((.((...((.....))..)).)))))))..	chr3:148927866-148928128(-)$1	1	85	120	13.3977
...(((.....((.(.....).)))))....))))	chr17:79226837-79227122(-)$1	1	192	227	12.1386
.(.((..(((..((.....))..))).))))))))	chr3:98311788-98312062(-)$1	1	117	152	13.9550
(((((((..(((.(.....).)))...))))))).	chr2:216292825-216293044(-)$1	1	120	155	14.9614
((((.(((((((.(.....).))).)))))).)))	chr17:80044322-80044531(-)$1	1	160	195	12.9996
(..((((..(((......)))....))))..).))	chr15:45007520-45007770(+)$1	1	191	226	10.5959
.((((((.((((((.....)))...))).).))))	chr12:104324163-104324397(+)$1	1	116	151	15.4455
.((((((((..(((.....)))..)).))))))..	chr1:116940409-116940627(+)$1	1	163	198	13.9249
((.((((((((.((.....)).)))))))).))).	chr17:37071195-37071444(+)$1	1	50	85	11.6470

#PSSM
c : 0.16	e : 0.14	: : 0.10	d : 0.10	g : 0.08	f : 0.08	[ : 0.05	= : 0.03	" : 0.03	$ : 0.03	b : 0.03	i : 0.03	! : 0.03	# : 0.01	a : 0.01	
c : 0.16	e : 0.16	f : 0.12	[ : 0.10	" : 0.08	g : 0.08	d : 0.07	! : 0.05	= : 0.03	$ : 0.03	b : 0.01	i : 0.01	: : 0.01	a : 0.01	
" : 0.14	e : 0.14	f : 0.14	g : 0.10	c : 0.08	[ : 0.08	d : 0.05	b : 0.05	! : 0.05	= : 0.03	$ : 0.03	i : 0.01	: : 0.01	] : 0.01	
f : 0.14	c : 0.10	g : 0.10	e : 0.10	" : 0.10	! : 0.08	b : 0.08	d : 0.07	= : 0.03	[ : 0.03	i : 0.03	$ : 0.01	a : 0.01	# : 0.01	h : 0.01	
f : 0.12	c : 0.10	g : 0.10	[ : 0.10	! : 0.08	e : 0.08	" : 0.08	b : 0.08	d : 0.07	= : 0.03	i : 0.03	$ : 0.01	# : 0.01	h : 0.01	
c : 0.14	e : 0.14	f : 0.12	g : 0.08	b : 0.08	! : 0.07	i : 0.07	d : 0.07	= : 0.05	a : 0.03	" : 0.03	$ : 0.01	[ : 0.01	# : 0.01	h : 0.01	
[ : 0.12	d : 0.10	! : 0.08	g : 0.08	e : 0.08	f : 0.08	= : 0.07	i : 0.07	c : 0.07	" : 0.05	b : 0.05	$ : 0.03	# : 0.01	a : 0.01	h : 0.01	
c : 0.19	d : 0.08	g : 0.08	! : 0.08	b : 0.08	[ : 0.07	i : 0.07	" : 0.05	= : 0.05	e : 0.05	f : 0.05	# : 0.03	$ : 0.03	h : 0.01	
c : 0.21	! : 0.12	b : 0.10	" : 0.08	g : 0.08	d : 0.07	i : 0.05	= : 0.05	e : 0.05	# : 0.03	$ : 0.03	a : 0.01	[ : 0.01	f : 0.01	h : 0.01	
c : 0.30	" : 0.12	! : 0.12	e : 0.10	g : 0.07	i : 0.05	d : 0.03	# : 0.03	= : 0.03	$ : 0.03	b : 0.01	f : 0.01	a : 0.01	h : 0.01	
[ : 0.23	c : 0.17	d : 0.12	" : 0.08	! : 0.08	i : 0.05	g : 0.05	e : 0.05	# : 0.03	= : 0.03	a : 0.01	$ : 0.01	h : 0.01	
c : 0.49	d : 0.12	[ : 0.07	" : 0.05	i : 0.05	e : 0.05	! : 0.03	= : 0.03	b : 0.03	g : 0.03	
c : 0.42	b : 0.21	d : 0.12	e : 0.05	i : 0.03	= : 0.03	g : 0.03	[ : 0.03	a : 0.01	o : 0.01	
c : 0.41	b : 0.17	d : 0.12	o : 0.08	e : 0.05	i : 0.03	= : 0.03	a : 0.03	g : 0.01	[ : 0.01	
n : 0.75	o : 0.14	= : 0.03	c : 0.01	l : 0.01	m : 0.01	a : 0.01	
n : 0.76	o : 0.14	m : 0.05	l : 0.01	= : 0.01	
n : 0.76	o : 0.14	m : 0.05	l : 0.03	
n : 0.76	o : 0.14	m : 0.05	c : 0.01	l : 0.01	
n : 0.76	o : 0.12	c : 0.05	m : 0.03	l : 0.01	
c : 0.39	b : 0.19	d : 0.12	a : 0.05	e : 0.05	o : 0.05	i : 0.03	= : 0.03	g : 0.03	n : 0.01	
c : 0.42	b : 0.19	d : 0.12	] : 0.07	e : 0.05	i : 0.03	= : 0.03	g : 0.03	a : 0.01	
c : 0.46	] : 0.12	d : 0.12	e : 0.05	4 : 0.05	3 : 0.03	i : 0.03	= : 0.03	g : 0.03	2 : 0.03	
c : 0.17	d : 0.12	2 : 0.10	] : 0.10	3 : 0.08	4 : 0.08	g : 0.07	b : 0.05	= : 0.05	e : 0.05	i : 0.03	a : 0.01	h : 0.01	
c : 0.17	3 : 0.17	2 : 0.12	4 : 0.08	b : 0.07	g : 0.07	e : 0.07	= : 0.05	i : 0.03	d : 0.03	] : 0.03	f : 0.01	a : 0.01	h : 0.01	
3 : 0.16	c : 0.14	2 : 0.12	g : 0.08	4 : 0.08	d : 0.07	] : 0.07	= : 0.05	e : 0.05	b : 0.05	i : 0.03	f : 0.03	h : 0.01	
c : 0.17	d : 0.10	3 : 0.10	2 : 0.08	g : 0.08	b : 0.08	f : 0.07	] : 0.05	i : 0.05	= : 0.05	e : 0.05	4 : 0.03	h : 0.01	
c : 0.23	d : 0.14	] : 0.08	e : 0.08	f : 0.08	= : 0.07	g : 0.07	i : 0.07	b : 0.07	a : 0.01	2 : 0.01	3 : 0.01	h : 0.01	
c : 0.21	f : 0.12	d : 0.10	g : 0.08	e : 0.08	= : 0.07	i : 0.07	b : 0.07	] : 0.05	4 : 0.03	2 : 0.01	3 : 0.01	: : 0.01	h : 0.01	
c : 0.14	e : 0.14	f : 0.12	g : 0.08	d : 0.07	= : 0.07	4 : 0.05	] : 0.05	b : 0.05	a : 0.05	2 : 0.03	3 : 0.03	i : 0.03	: : 0.01	h : 0.01	
3 : 0.14	2 : 0.12	e : 0.10	f : 0.10	d : 0.07	] : 0.07	4 : 0.07	c : 0.07	g : 0.05	b : 0.05	= : 0.03	i : 0.03	a : 0.03	h : 0.01	
e : 0.14	2 : 0.12	f : 0.12	3 : 0.12	b : 0.08	c : 0.07	g : 0.07	4 : 0.07	d : 0.07	= : 0.03	i : 0.03	] : 0.03	
e : 0.17	c : 0.12	3 : 0.12	f : 0.10	] : 0.08	b : 0.08	g : 0.07	d : 0.07	= : 0.03	4 : 0.03	i : 0.03	2 : 0.01	a : 0.01	
e : 0.17	c : 0.16	d : 0.16	f : 0.14	g : 0.08	] : 0.07	b : 0.05	= : 0.03	i : 0.03	a : 0.01	3 : 0.01	4 : 0.01	2 : 0.01	
c : 0.17	d : 0.16	f : 0.12	e : 0.10	g : 0.07	] : 0.07	: : 0.07	i : 0.05	3 : 0.03	2 : 0.03	! : 0.01	= : 0.01	a : 0.01	F : 0.01	b : 0.01	
d : 0.17	c : 0.16	e : 0.14	f : 0.12	: : 0.10	g : 0.07	= : 0.03	i : 0.03	2 : 0.03	! : 0.01	F : 0.01	> : 0.01	3 : 0.01	b : 0.01	] : 0.01	

#score	757.1108838846897
#seq	56
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_UTR_m3_run1.txt

#BEAR
dd[dddd[ddddbbpppppppbb]dddd]dddd333dddd	chr19:56146709-56146975(+)$1	266	213	253	24.4967
DDDD==========ppppppp==========::cccoooo	chr18:55712826-55713091(+)$1	265	49	89	19.6499
ddd!!ddddbbcccpppppppccc]bb]dddd333dddd]	chr2:173472384-173472693(+)$1	309	142	182	25.0907
!!bb[eeeee[cccpppppppccc]eeeeebb22bbhhhh	chr12:123464008-123464284(+)$1	276	12	52	22.8928
dd[abb[eeeeebbpppppppbb]eeeee]bb]a]dddd]	chr14:24776731-24777073(+)$1	342	242	282	25.7063

#otherMatches

#Seq PSSM
agccucgcuggaccguugagaggauucaucgagacccugg	chr19:56146709-56146975(+)$1	266	213	253	24.4967
GGACGCUUGUCGCGGGCGCGGCGUGACAGGCAGGCUGGAU	chr18:55712826-55713091(+)$1	265	49	89	19.6499
AGGAGCAGAGUAGUGUUGAUAACUGGCAUCUGGAACCUAC	chr2:173472384-173472693(+)$1	309	142	182	25.0907
UUCUAUGGGCAAAGAUGCUGCCUUAGUUCAGGUUUGUCAG	chr12:123464008-123464284(+)$1	276	12	52	22.8928
CUGCCUAUAUCCCCUAAAGGUGGAGGGUAGAGCGGAGGGU	chr14:24776731-24777073(+)$1	342	242	282	25.7063

#DB
((.((((.((((((.......)).)))).))))...))))	chr19:56146709-56146975(+)$1	1	213	253	24.4967
((((((((((((((.......))))))))))..(((....	chr18:55712826-55713091(+)$1	1	49	89	19.6499
(((..(((((((((.......))).)).))))...)))).	chr2:173472384-173472693(+)$1	1	142	182	25.0907
..((.(((((.(((.......))).)))))))..))))))	chr12:123464008-123464284(+)$1	1	12	52	22.8928
((.(((.(((((((.......)).))))).)).).)))).	chr14:24776731-24777073(+)$1	1	242	282	25.7063

#PSSM
d : 0.60	D : 0.20	! : 0.20	
d : 0.60	D : 0.20	! : 0.20	
[ : 0.40	D : 0.20	d : 0.20	b : 0.20	
d : 0.20	D : 0.20	! : 0.20	b : 0.20	a : 0.20	
d : 0.20	= : 0.20	! : 0.20	[ : 0.20	b : 0.20	
d : 0.40	= : 0.20	e : 0.20	b : 0.20	
d : 0.40	= : 0.20	e : 0.20	[ : 0.20	
e : 0.40	[ : 0.20	= : 0.20	d : 0.20	
d : 0.40	e : 0.40	= : 0.20	
e : 0.40	d : 0.20	= : 0.20	b : 0.20	
d : 0.20	= : 0.20	b : 0.20	[ : 0.20	e : 0.20	
c : 0.40	d : 0.20	= : 0.20	e : 0.20	
b : 0.40	c : 0.40	= : 0.20	
b : 0.40	c : 0.40	= : 0.20	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
b : 0.40	c : 0.40	= : 0.20	
b : 0.40	c : 0.40	= : 0.20	
] : 0.40	c : 0.40	= : 0.20	
] : 0.40	d : 0.20	= : 0.20	e : 0.20	
e : 0.40	d : 0.20	= : 0.20	b : 0.20	
e : 0.40	d : 0.20	= : 0.20	b : 0.20	
e : 0.40	d : 0.20	= : 0.20	] : 0.20	
e : 0.40	] : 0.20	= : 0.20	d : 0.20	
d : 0.40	= : 0.20	e : 0.20	] : 0.20	
d : 0.40	b : 0.40	= : 0.20	
d : 0.40	b : 0.40	: : 0.20	
d : 0.20	: : 0.20	3 : 0.20	2 : 0.20	] : 0.20	
3 : 0.40	c : 0.20	2 : 0.20	a : 0.20	
3 : 0.40	c : 0.20	b : 0.20	] : 0.20	
d : 0.40	3 : 0.20	c : 0.20	b : 0.20	
d : 0.60	o : 0.20	h : 0.20	
d : 0.60	o : 0.20	h : 0.20	
d : 0.60	o : 0.20	h : 0.20	
] : 0.40	d : 0.20	o : 0.20	h : 0.20	

#score	117.83666972452005
#seq	5
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_UTR_m3_run2.txt

#BEAR
eeeee"""cccpppppppccceeeee:	chr17:62501262-62501526(-)$1	264	21	48	13.8777
ffffff!!cccpppppppccc22ffff	chr2:242255583-242255903(+)$1	320	256	283	14.8245
eeeee[bb[bbpppppppbb]bb]eee	chr3:186649028-186649251(+)$1	223	14	41	14.1821
&dddd[a[cccpppppppccc22a]dd	chr11:66394210-66394463(+)$1	253	24	51	14.0267
[ccc!!ddddrrrrrrrrrddddcccc	chr19:58361140-58361411(+)$1	271	39	66	11.8815
ca[hhhhhhhhppppppphhhhhhhh]	chr7:32930590-32930851(-)$1	261	117	144	12.9816
eeeee[eeeeepppppppeeeee]eee	chr19:40790508-40790813(-)$1	305	18	45	13.9050
ffff!!a[cccpppppppccc]a]fff	chr22:50018166-50018423(-)$1	257	192	219	15.4238
ddd!!ffffffpppppppffffff22d	chr1:228270778-228271044(+)$1	266	200	227	13.3202
c!!gggggggrrrrrrrrrggggggg2	chr7:924031-924276(+)$1	245	48	75	13.1472
ddd[cccddddpppppppdddd333cc	chr15:66084336-66084601(-)$1	265	117	144	14.6099
ff####eeeeepppppppeeeee4444	chr22:19842116-19842353(-)$1	237	104	131	14.2464
===========ppppppp=========	chr5:133512226-133512505(-)$1	279	59	86	17.9854
ffffff"""bbpppppppbb4444fff	chr2:172379616-172379871(+)$1	255	97	124	14.9305
gggggggbb[apppppppa]bb]gggg	chr6:15249039-15249270(+)$1	231	200	227	15.2281
d!!gggggggrrrrrrrrrggggggg2	chr17:79878775-79879045(-)$1	270	147	174	12.9829
=======ddddpppppppdddd]====	chr20:1165021-1165251(-)$1	230	186	213	16.5427
==========qqqqqqqq=========	chr6:35656402-35656670(-)$1	268	203	230	10.6847
ggdddd[a[bbrrrrrrrrrbb]a22d	chr1:2326718-2326994(+)$1	276	52	79	11.2224
eeiiiiiiiiipppppppiiiiiiiii	chr12:125398378-125398596(-)$1	218	132	159	16.7754
"""eeeee[bbpppppppbb]eeeee]	chr2:191513914-191514192(+)$1	278	27	54	15.1502
===========ppppppp=========	chr3:138489031-138489286(-)$1	255	56	83	17.9854
ccdddd[ddddpppppppdddd]dddd	chr11:62476937-62477241(-)$1	304	210	237	14.0442
[ffffff[cccpppppppcccffffff	chr4:1321255-1321527(+)$1	272	163	190	14.8577
Eggggggg[bbpppppppbb]gggggg	chr8:130951837-130952108(-)$1	271	71	98	15.3179
%%iiiiiiiiipppppppiiiiiiiii	chr22:45133106-45133397(+)$1	291	159	186	15.7170
[eeeeecccbbpppppppbb]ccc]ee	chr1:36787719-36787984(+)$1	265	168	195	14.9837
===========qqqqqqqq========	chr3:125075933-125076215(-)$1	282	42	69	10.6953
fffff"""cccpppppppccc22ffff	chr6:12012836-12013118(+)$1	282	250	277	14.8664
===========ppppppp=========	chr17:7477338-7477654(+)$1	316	7	34	17.9854
===========qqqqqqqq========	chr2:242254885-242255188(-)$1	303	89	116	10.6953
c####ffffffpppppppffffff444	chr5:139030487-139030690(+)$1	203	156	183	14.1179
fiiiiiiiiiapppppppa]iiiiiii	chr18:72920187-72920442(-)$1	255	41	68	17.0489
e"""dddd[bbpppppppbbdddd]ee	chr16:28875848-28876090(+)$1	242	181	208	14.8309
===========ppppppp=========	chr17:7477256-7477504(+)$1	248	89	116	17.9854
ffff[dddd[apppppppa22ddddff	chr17:46703606-46703847(-)$1	241	200	227	13.9181
!!iiiiiiiiipppppppiiiiiiiii	chr1:19810837-19811121(-)$1	284	61	88	17.2215
e[ddddbb[bbpppppppbb]bb]ddd	chr17:73149747-73149996(-)$1	249	15	42	13.8195
"""ffffff[apppppppaffffff22	chr12:31478402-31478627(-)$1	225	182	209	14.3582
gggggg!!cccqqqqqqqqccc]gggg	chr19:1883026-1883259(-)$1	233	179	206	9.2450
f[bb[ccc!!apppppppa]ccc]bbf	chr7:77167224-77167489(+)$1	265	192	219	14.5637
[iiiiiiiiiqqqqqqqqiiiiiiiii	chr6:7140905-7141169(+)$1	264	174	201	9.9828
ggggggg[bbrrrrrrrrrbb]ggggg	chr1:245026123-245026371(-)$1	248	180	207	12.6376
hhh[ccc!!arrrrrrrrra22ccchh	chr4:56411816-56412073(-)$1	257	177	204	11.3224
hhgggggggbbpppppppbb]gggggg	chr21:44269381-44269632(-)$1	251	59	86	15.7450
ffffff[ddddpppppppdddd]ffff	chr3:183353947-183354198(+)$1	251	116	143	14.5008
[bb"""eeeeepppppppeeeee4444	chr19:18547930-18548204(-)$1	274	178	205	14.1164
cc!!dddd[bbpppppppbb]dddd]c	chr20:49547634-49547874(-)$1	240	2	29	15.0248
g[dddd[ddddpppppppdddd]dddd	chr17:79879777-79880032(-)$1	255	90	117	14.2908
===========ppppppp=========	chr19:56152428-56152687(+)$1	259	148	175	17.9854
:ffffff!!bbpppppppbbffffff:	chr17:73629943-73630216(-)$1	273	59	86	12.6504
!iiiiiiiiiqqqqqqqqiiiiiiiii	chr12:31478265-31478500(-)$1	235	118	145	9.9464
bb!!dddd[bbpppppppbb]dddd]b	chr20:49547817-49548056(-)$1	239	184	211	14.3722
!dddd!!ddddpppppppdddd]dddd	chr2:38977858-38978140(-)$1	282	180	207	14.2794
bb[a"""ddddpppppppdddd4444a	chr7:148580209-148580446(-)$1	237	27	54	14.5802
b"""cccddddpppppppdddd]ccc]	chr1:1822153-1822370(-)$1	217	1	28	14.9997

#otherMatches

#Seq PSSM
CGUUGAUCCGGAGCUCUACCGCGGCGU	chr17:62501262-62501526(-)$1	264	21	48	13.8777
UGGAGGACUGGCCAGCCCCCAAACCUC	chr2:242255583-242255903(+)$1	320	256	283	14.8245
GUGCGCCCUGCCCGGAGAGCUGGACGC	chr3:186649028-186649251(+)$1	223	14	41	14.1821
CUGGUUGUGGUUUUUCAUGCCCUCUAC	chr11:66394210-66394463(+)$1	253	24	51	14.0267
AUUUCCACGUGUGCACGUAACGUAAGG	chr19:58361140-58361411(+)$1	271	39	66	11.8815
GCCGAAGGAGGACACCCCCUUCCUUCU	chr7:32930590-32930851(-)$1	261	117	144	12.9816
GCGCGGCGGGCAGAUCGAGCCUGGCGU	chr19:40790508-40790813(-)$1	305	18	45	13.9050
GAGCCUGUGGCUGCUGUUGCUUCUGCU	chr22:50018166-50018423(-)$1	257	192	219	15.4238
GCUCGGGCGGCCUGAGACGCCGUCAAG	chr1:228270778-228271044(+)$1	266	200	227	13.3202
GGAGGCCUGCCAACGGCCUGCAGGCUG	chr7:924031-924276(+)$1	245	48	75	13.1472
AGCGCCGGGCUGGGGAUGAGCUAAGCG	chr15:66084336-66084601(-)$1	265	117	144	14.6099
CGCAGAGGGGCACUCGGAGCCCCAGCC	chr22:19842116-19842353(-)$1	237	104	131	14.2464
ACUGGGCCUGGCCUUCUUUCGGGCCCG	chr5:133512226-133512505(-)$1	279	59	86	17.9854
CAGCCUUUUGCUGAACUUGCUUCCAGG	chr2:172379616-172379871(+)$1	255	97	124	14.9305
CCCUGUUCUGAUGCCACUUGGGAAGCG	chr6:15249039-15249270(+)$1	231	200	227	15.2281
GCUAUGGCCAAGCGUUCCCUGGCCGUC	chr17:79878775-79879045(-)$1	270	147	174	12.9829
GGGAGCAGCUAUGUCAGUUGGUGUGUU	chr20:1165021-1165251(-)$1	230	186	213	16.5427
ACGCGGCUUCGCAGCCCAGGAGCCGCG	chr6:35656402-35656670(-)$1	268	203	230	10.6847
CCUGCCAGACCAGAGACCCAGGACAGG	chr1:2326718-2326994(+)$1	276	52	79	11.2224
CUAUGCGCUCGGGGUUGGCGAGUGUGU	chr12:125398378-125398596(-)$1	218	132	159	16.7754
ACCUUCCCUUCCCCCCUCGAUGGGAGC	chr2:191513914-191514192(+)$1	278	27	54	15.1502
UGAAUUUGUUCACCUAUAGAACAAAUU	chr3:138489031-138489286(-)$1	255	56	83	17.9854
UCGGCUCCAGUCGCGGUAACUGAAGCC	chr11:62476937-62477241(-)$1	304	210	237	14.0442
GCCUGGAGUUCAGCCUCAGAAUCCAGG	chr4:1321255-1321527(+)$1	272	163	190	14.8577
GGAGCUGCCGCCUGGCUUGUCGCGGCU	chr8:130951837-130952108(-)$1	271	71	98	15.3179
UUGUAUUUCUGUCUUGGUUGGAAAUAC	chr22:45133106-45133397(+)$1	291	159	186	15.7170
GGGGCCCAUCAGUAAUAGUGCAUGCGG	chr1:36787719-36787984(+)$1	265	168	195	14.9837
gcgugcgugcgugugucugugcgCGUG	chr3:125075933-125076215(-)$1	282	42	69	10.6953
GGGUGAAAGAGACCAGGCCUCGGCAUC	chr6:12012836-12013118(+)$1	282	250	277	14.8664
GGGUCACCCCCUUAUGUCGGGGGUGGC	chr17:7477338-7477654(+)$1	316	7	34	17.9854
GGGGGGGAGGUCAAGCGUAGCCUCUUC	chr2:242254885-242255188(-)$1	303	89	116	10.6953
AACUUGGGUAGAACCCCCCUACCCCUC	chr5:139030487-139030690(+)$1	203	156	183	14.1179
AGCCUGGACGCAAACUGCGACGUUUAG	chr18:72920187-72920442(-)$1	255	41	68	17.0489
ccaaggguuguaaauuccacacccagc	chr16:28875848-28876090(+)$1	242	181	208	14.8309
GGGUCACCCCCUUAUGUCGGGGGUGGC	chr17:7477256-7477504(+)$1	248	89	116	17.9854
CGGAUAAUGUCUGAGAAUGUCCAUUUC	chr17:46703606-46703847(-)$1	241	200	227	13.9181
CCGCUUCUAGGGAGGCCGCCUAGGAGC	chr1:19810837-19811121(-)$1	284	61	88	17.2215
CAUGCGGUUGGUCUCGCUCUCGCGCGC	chr17:73149747-73149996(-)$1	249	15	42	13.8195
CUAGGGUGGACAAUAAACGCCAUUCGC	chr12:31478402-31478627(-)$1	225	182	209	14.3582
CCCAUGAGUCCGGCUCACAGGAACGUG	chr19:1883026-1883259(-)$1	233	179	206	9.2450
UAUUGAGGUUGGCACUAACUCCUGGGA	chr7:77167224-77167489(+)$1	265	192	219	14.5637
GCGCGCUGGCCCCCGAGCGCCAGCGUG	chr6:7140905-7141169(+)$1	264	174	201	9.9828
GAAUUCGUAGUUGAUUGUUCUUUGAAU	chr1:245026123-245026371(-)$1	248	180	207	12.6376
GUUUAUAUUCUUUGAAAGUGUUUGUAG	chr4:56411816-56412073(-)$1	257	177	204	11.3224
CUCUGUCUGGCAUCGGUGGCACAGAUG	chr21:44269381-44269632(-)$1	251	59	86	15.7450
CCGUCGGUUCUGUCCGGGAGGAAUGAC	chr3:183353947-183354198(+)$1	251	116	143	14.5008
GAAAAAUGCCCGAAAGUGGGGCGGGGC	chr19:18547930-18548204(-)$1	274	178	205	14.1164
cguugccgccgccgccuccgccggccc	chr20:49547634-49547874(-)$1	240	2	29	15.0248
CGCAGUGGUGCUGGGGGCGUGCAGCUG	chr17:79879777-79880032(-)$1	255	90	117	14.2908
CCUGGCCCUGGGACGACGCCGGGGCCA	chr19:56152428-56152687(+)$1	259	148	175	17.9854
CAGCCAGCUGCUGUCUCUGCCUGGCUU	chr17:73629943-73630216(-)$1	273	59	86	12.6504
GCCGAGGGUCUUUAAAUCGGCCUUUGG	chr12:31478265-31478500(-)$1	235	118	145	9.9464
cguugccgccgccgccuccgccggccc	chr20:49547817-49548056(-)$1	239	184	211	14.3722
AUCGUGGUUGUGUUUGAGAUAGAACGA	chr2:38977858-38978140(-)$1	282	180	207	14.2794
GUCCUGUUGAAUUCCCACUUCAUUGUG	chr7:148580209-148580446(-)$1	237	27	54	14.5802
CACCUGCCCGCAGCGCCCGCGGAGCGC	chr1:1822153-1822370(-)$1	217	1	28	14.9997

#DB
(((((...(((.......)))))))).	chr17:62501262-62501526(-)$1	1	21	48	13.8777
((((((..(((.......)))..))))	chr2:242255583-242255903(+)$1	1	256	283	14.8245
(((((.((.((.......)).)).)))	chr3:186649028-186649251(+)$1	1	14	41	14.1821
.((((.(.(((.......)))..).))	chr11:66394210-66394463(+)$1	1	24	51	14.0267
.(((..((((.........))))))))	chr19:58361140-58361411(+)$1	1	39	66	11.8815
((.((((((((.......)))))))).	chr7:32930590-32930851(-)$1	1	117	144	12.9816
(((((.(((((.......))))).)))	chr19:40790508-40790813(-)$1	1	18	45	13.9050
((((..(.(((.......))).).)))	chr22:50018166-50018423(-)$1	1	192	219	15.4238
(((..((((((.......))))))..)	chr1:228270778-228271044(+)$1	1	200	227	13.3202
(..(((((((.........))))))).	chr7:924031-924276(+)$1	1	48	75	13.1472
(((.(((((((.......))))...))	chr15:66084336-66084601(-)$1	1	117	144	14.6099
((....(((((.......)))))....	chr22:19842116-19842353(-)$1	1	104	131	14.2464
(((((((((((.......)))))))))	chr5:133512226-133512505(-)$1	1	59	86	17.9854
((((((...((.......))....)))	chr2:172379616-172379871(+)$1	1	97	124	14.9305
(((((((((.(.......).)).))))	chr6:15249039-15249270(+)$1	1	200	227	15.2281
(..(((((((.........))))))).	chr17:79878775-79879045(-)$1	1	147	174	12.9829
(((((((((((.......)))).))))	chr20:1165021-1165251(-)$1	1	186	213	16.5427
((((((((((........)))))))))	chr6:35656402-35656670(-)$1	1	203	230	10.6847
((((((.(.((.........)).)..)	chr1:2326718-2326994(+)$1	1	52	79	11.2224
(((((((((((.......)))))))))	chr12:125398378-125398596(-)$1	1	132	159	16.7754
...(((((.((.......)).))))).	chr2:191513914-191514192(+)$1	1	27	54	15.1502
(((((((((((.......)))))))))	chr3:138489031-138489286(-)$1	1	56	83	17.9854
))((((.((((.......)))).))))	chr11:62476937-62477241(-)$1	1	210	237	14.0442
.((((((.(((.......)))))))))	chr4:1321255-1321527(+)$1	1	163	190	14.8577
((((((((.((.......)).))))))	chr8:130951837-130952108(-)$1	1	71	98	15.3179
..(((((((((.......)))))))))	chr22:45133106-45133397(+)$1	1	159	186	15.7170
.((((((((((.......)).))).))	chr1:36787719-36787984(+)$1	1	168	195	14.9837
(((((((((((........))))))))	chr3:125075933-125076215(-)$1	1	42	69	10.6953
(((((...(((.......)))..))))	chr6:12012836-12013118(+)$1	1	250	277	14.8664
(((((((((((.......)))))))))	chr17:7477338-7477654(+)$1	1	7	34	17.9854
(((((((((((........))))))))	chr2:242254885-242255188(-)$1	1	89	116	10.6953
(....((((((.......))))))...	chr5:139030487-139030690(+)$1	1	156	183	14.1179
(((((((((((.......).)))))))	chr18:72920187-72920442(-)$1	1	41	68	17.0489
(...((((.((.......)))))).))	chr16:28875848-28876090(+)$1	1	181	208	14.8309
(((((((((((.......)))))))))	chr17:7477256-7477504(+)$1	1	89	116	17.9854
((((.((((.(.......)..))))))	chr17:46703606-46703847(-)$1	1	200	227	13.9181
..(((((((((.......)))))))))	chr1:19810837-19811121(-)$1	1	61	88	17.2215
(.((((((.((.......)).)).)))	chr17:73149747-73149996(-)$1	1	15	42	13.8195
...((((((.(.......)))))))..	chr12:31478402-31478627(-)$1	1	182	209	14.3582
((((((..(((........))).))))	chr19:1883026-1883259(-)$1	1	179	206	9.2450
(.((.(((..(.......).))).)))	chr7:77167224-77167489(+)$1	1	192	219	14.5637
.(((((((((........)))))))))	chr6:7140905-7141169(+)$1	1	174	201	9.9828
(((((((.((.........)).)))))	chr1:245026123-245026371(-)$1	1	180	207	12.6376
(((.(((..(.........)..)))))	chr4:56411816-56412073(-)$1	1	177	204	11.3224
))(((((((((.......)).))))))	chr21:44269381-44269632(-)$1	1	59	86	15.7450
((((((.((((.......)))).))))	chr3:183353947-183354198(+)$1	1	116	143	14.5008
.((...(((((.......)))))....	chr19:18547930-18548204(-)$1	1	178	205	14.1164
((..((((.((.......)).)))).)	chr20:49547634-49547874(-)$1	1	2	29	15.0248
(.((((.((((.......)))).))))	chr17:79879777-79880032(-)$1	1	90	117	14.2908
(((((((((((.......)))))))))	chr19:56152428-56152687(+)$1	1	148	175	17.9854
.((((((..((.......)))))))).	chr17:73629943-73630216(-)$1	1	59	86	12.6504
.(((((((((........)))))))))	chr12:31478265-31478500(-)$1	1	118	145	9.9464
((..((((.((.......)).)))).)	chr20:49547817-49548056(-)$1	1	184	211	14.3722
.((((..((((.......)))).))))	chr2:38977858-38978140(-)$1	1	180	207	14.2794
((.(...((((.......))))....)	chr7:148580209-148580446(-)$1	1	27	54	14.5802
(...(((((((.......)))).))).	chr1:1822153-1822370(-)$1	1	1	28	14.9997

#PSSM
f : 0.16	= : 0.16	e : 0.10	[ : 0.08	c : 0.08	g : 0.08	d : 0.05	! : 0.05	b : 0.05	" : 0.03	h : 0.03	& : 0.01	E : 0.01	% : 0.01	: : 0.01	
f : 0.16	= : 0.16	e : 0.08	g : 0.08	d : 0.07	" : 0.07	c : 0.05	! : 0.05	i : 0.05	[ : 0.05	b : 0.05	h : 0.03	a : 0.01	% : 0.01	# : 0.01	
= : 0.16	f : 0.14	d : 0.14	i : 0.10	g : 0.08	e : 0.07	! : 0.07	" : 0.07	[ : 0.03	# : 0.03	b : 0.03	c : 0.01	h : 0.01	
f : 0.16	= : 0.16	g : 0.12	d : 0.10	i : 0.10	e : 0.08	! : 0.05	" : 0.05	[ : 0.03	# : 0.03	c : 0.01	h : 0.01	b : 0.01	a : 0.01	
d : 0.16	= : 0.16	f : 0.12	g : 0.12	i : 0.10	e : 0.08	! : 0.05	c : 0.05	# : 0.03	[ : 0.03	" : 0.03	h : 0.01	
= : 0.16	f : 0.14	d : 0.14	g : 0.12	i : 0.10	" : 0.07	c : 0.07	[ : 0.05	! : 0.05	e : 0.03	h : 0.01	# : 0.01	
= : 0.16	g : 0.10	i : 0.10	d : 0.08	f : 0.08	c : 0.08	" : 0.07	e : 0.07	[ : 0.07	! : 0.05	b : 0.03	a : 0.03	h : 0.01	
d : 0.23	= : 0.14	i : 0.10	! : 0.07	[ : 0.07	e : 0.07	g : 0.07	" : 0.05	b : 0.05	f : 0.05	c : 0.03	h : 0.01	a : 0.01	
d : 0.17	c : 0.14	[ : 0.14	= : 0.14	i : 0.10	e : 0.05	f : 0.05	g : 0.05	! : 0.05	b : 0.03	h : 0.01	" : 0.01	
b : 0.23	d : 0.16	= : 0.14	c : 0.12	i : 0.10	e : 0.05	[ : 0.05	f : 0.03	g : 0.03	h : 0.01	! : 0.01	a : 0.01	
b : 0.21	d : 0.14	c : 0.12	= : 0.12	r : 0.08	a : 0.08	e : 0.05	q : 0.05	i : 0.05	f : 0.03	h : 0.01	
p : 0.78	r : 0.10	q : 0.10	
p : 0.78	r : 0.10	q : 0.10	
p : 0.78	r : 0.10	q : 0.10	
p : 0.78	r : 0.10	q : 0.10	
p : 0.78	r : 0.10	q : 0.10	
p : 0.78	r : 0.10	q : 0.10	
p : 0.78	r : 0.10	q : 0.10	
b : 0.19	d : 0.14	c : 0.10	r : 0.10	= : 0.10	a : 0.08	i : 0.08	e : 0.05	q : 0.05	f : 0.03	h : 0.01	
b : 0.21	d : 0.16	= : 0.14	c : 0.12	i : 0.08	e : 0.05	f : 0.05	] : 0.05	g : 0.03	h : 0.01	r : 0.01	2 : 0.01	a : 0.01	
d : 0.17	c : 0.14	] : 0.14	= : 0.14	i : 0.10	f : 0.07	e : 0.05	b : 0.05	g : 0.03	2 : 0.03	h : 0.01	4 : 0.01	
d : 0.23	= : 0.14	i : 0.10	e : 0.08	f : 0.08	2 : 0.07	b : 0.07	g : 0.07	c : 0.05	] : 0.03	h : 0.01	4 : 0.01	
] : 0.16	= : 0.14	i : 0.10	e : 0.08	d : 0.08	f : 0.08	g : 0.08	2 : 0.05	c : 0.05	b : 0.03	4 : 0.03	h : 0.01	a : 0.01	3 : 0.01	
= : 0.16	f : 0.14	g : 0.12	d : 0.12	i : 0.10	] : 0.08	c : 0.07	4 : 0.07	e : 0.03	a : 0.03	h : 0.01	3 : 0.01	
= : 0.16	f : 0.14	g : 0.12	d : 0.12	i : 0.10	e : 0.07	4 : 0.07	] : 0.05	c : 0.05	2 : 0.03	h : 0.01	3 : 0.01	b : 0.01	
= : 0.16	f : 0.14	g : 0.12	e : 0.10	i : 0.10	d : 0.08	4 : 0.07	c : 0.05	2 : 0.05	h : 0.03	] : 0.03	b : 0.01	
= : 0.16	f : 0.14	d : 0.12	i : 0.10	g : 0.08	e : 0.07	c : 0.05	] : 0.05	2 : 0.05	4 : 0.05	: : 0.03	h : 0.01	b : 0.01	a : 0.01	

#score	798.6234594391183
#seq	56
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_UTR_m2_run1.txt

#BEAR
eeeeesssssssssseee	chr19:5140266-5140589(+)$1	323	118	136	8.1874
"""bbqqqqqqqqbb22a	chr6:31508844-31509054(-)$1	210	45	63	11.3917
d!!bbqqqqqqqqbb22d	chr17:48827967-48828254(+)$1	287	45	63	11.5332
dddddqqqqqqqqdddd:	chr11:75111357-75111577(+)$1	220	87	105	12.1301
fffffqqqqqqqqfffff	chr15:93426437-93426697(+)$1	260	156	174	12.4934
dddddqqqqqqqqdddd]	chr3:133465151-133465428(+)$1	277	170	188	13.1034
%ddddqqqqqqqqdddd4	chr5:180670207-180670479(-)$1	272	218	236	12.5226
=====qqqqqqqq=====	chr16:89981290-89981535(+)$1	245	49	67	13.2440
:ddddqqqqqqqqdddd:	chr6:31804756-31804974(+)$1	218	195	213	11.2359
:ddddqqqqqqqqdddd:	chr6:33171653-33171900(+)$1	247	185	203	11.2359
fffbbqqqqqqqqbb]ff	chr22:19929020-19929366(-)$1	346	275	293	11.8300
!!cccqqqqqqqqccccc	chr16:89980231-89980509(+)$1	278	12	30	13.2700
eeeeeqqqqqqqqeeeee	chr18:47017963-47018172(-)$1	209	38	56	14.3945
e[assssssssssaeeee	chr17:27047518-27047734(+)$1	216	133	151	8.1241
[bb[aqqqqqqqqabbdd	chr13:26828211-26828521(+)$1	310	210	228	11.8995
iiiiiqqqqqqqqiiiii	chr1:249151745-249152050(-)$1	305	15	33	12.8989
eeeeeqqqqqqqqeeeee	chr9:123638030-123638293(-)$1	263	4	22	14.3945
eeeeesssssssssseee	chr11:5275503-5275744(-)$1	241	37	55	8.1874
fffffqqqqqqqqfffff	chr3:133467155-133467387(+)$1	232	127	145	12.4934
eeeeeqqqqqqqqeeeee	chr12:125398972-125399243(-)$1	271	196	214	14.3945
[ddddqqqqqqqqdddd4	chr6:31804774-31804985(+)$1	211	177	195	13.2764
[ddddqqqqqqqqdddde	chr16:30107137-30107408(-)$1	271	125	143	13.4819
eeeeeqqqqqqqqeeeee	chr15:93426553-93426923(+)$1	370	285	303	14.3945
eee[aqqqqqqqqaeeee	chr19:49606565-49606838(+)$1	273	178	196	14.1360
b[cccqqqqqqqqccc]b	chr19:59055857-59056094(+)$1	237	177	195	12.8255
eeeeeqqqqqqqqeeeee	chr11:93466532-93466785(-)$1	253	41	59	14.3945
[ddddqqqqqqqqddddd	chr16:1419954-1420253(-)$1	299	107	125	13.2288
=[cccqqqqqqqqccc==	chr8:33370962-33371194(+)$1	232	53	71	13.5176
H:cccqqqqqqqqcccgg	chr7:5569351-5569625(-)$1	274	109	127	11.5041
f[cccqqqqqqqqccc]f	chr17:42401880-42402159(-)$1	279	74	92	13.3346
eeeeeqqqqqqqqeeeee	chr12:56991291-56991554(-)$1	263	220	238	14.3945
eeeeeqqqqqqqqeeeee	chr17:27050620-27050857(+)$1	237	185	203	14.3945
iiiiiqqqqqqqqiiiii	chr1:249151853-249152142(-)$1	289	107	125	12.8989
fffffqqqqqqqqfffff	chr2:85770357-85770648(+)$1	291	19	37	12.4934
!ddddqqqqqqqqdddd2	chr17:26903718-26903986(-)$1	268	68	86	13.0263
eeeeeqqqqqqqqeeeee	chr12:56991227-56991487(-)$1	260	153	171	14.3945
eeeeeqqqqqqqqeeeee	chr18:47017972-47018186(-)$1	214	52	70	14.3945
eeeeeqqqqqqqqeeeee	chr1:155658321-155658569(-)$1	248	36	54	14.3945
eeeeeqqqqqqqqeeeee	chr18:47017932-47018163(-)$1	231	29	47	14.3945
e[assssssssssaeeee	chr17:27047496-27047718(+)$1	222	155	173	8.1241
eeeeeqqqqqqqqeeeee	chr19:41271110-41271360(+)$1	250	130	148	14.3945
d[cccqqqqqqqqccc]d	chr19:54971678-54971949(+)$1	271	35	53	13.2491
eeeeeqqqqqqqqeeeee	chr18:47017986-47018197(-)$1	211	63	81	14.3945
eee[aqqqqqqqqaeeee	chr19:49606638-49606885(+)$1	247	105	123	14.1360
fffffqqqqqqqqfffff	chr3:12881714-12881964(-)$1	250	109	127	12.4934
=[cccqqqqqqqqccc==	chr8:33370956-33371162(+)$1	206	59	77	13.5176
eeeeeqqqqqqqqeeeee	chr11:116707960-116708207(-)$1	247	148	166	14.3945
=[cccqqqqqqqqccc==	chr8:33370931-33371148(+)$1	217	84	102	13.5176
fffffqqqqqqqqfffff	chr15:93426497-93426753(+)$1	256	96	114	12.4934
e[assssssssssaeeee	chr17:27047482-27047696(+)$1	214	169	187	8.1241
gggggqqqqqqqqggggg	chr1:42643255-42643525(-)$1	270	136	154	12.9649
e[cccqqqqqqqqccc]e	chr16:1413724-1413989(-)$1	265	75	93	13.7578
#ddddqqqqqqqqdddd4	chr5:179050127-179050360(-)$1	233	140	158	13.1333

#otherMatches

#Seq PSSM
GCUGGAAAAUGACACUCA	chr19:5140266-5140589(+)$1	323	118	136	8.1874
GGAAGGGAGGAUACUGAG	chr6:31508844-31509054(-)$1	210	45	63	11.3917
GUCCAAUUAAAACUGAUC	chr17:48827967-48828254(+)$1	287	45	63	11.5332
GAGAUGAUGACGAGUCUG	chr11:75111357-75111577(+)$1	220	87	105	12.1301
GGCCCGAGUCGUAGGGUC	chr15:93426437-93426697(+)$1	260	156	174	12.4934
UCCUGGGUGAGUGCGGGC	chr3:133465151-133465428(+)$1	277	170	188	13.1034
UGGCUCAAGUGUCGGCCU	chr5:180670207-180670479(-)$1	272	218	236	12.5226
cacauuugugugugugug	chr16:89981290-89981535(+)$1	245	49	67	13.2440
GGGCCAAUGGGAGGGCCA	chr6:31804756-31804974(+)$1	218	195	213	11.2359
GGGCCAUGAAGAAGGCUG	chr6:33171653-33171900(+)$1	247	185	203	11.2359
UUGGUCUAGUCUUGCUCA	chr22:19929020-19929366(-)$1	346	275	293	11.8300
CUGGACAGGCCACUCCCU	chr16:89980231-89980509(+)$1	278	12	30	13.2700
AAGGGAAAGCAAGCCCUU	chr18:47017963-47018172(-)$1	209	38	56	14.3945
CACUGCAGUUCUUGGGGC	chr17:27047518-27047734(+)$1	216	133	151	8.1241
AGCAGGAGCAGAACGCGC	chr13:26828211-26828521(+)$1	310	210	228	11.8995
UCUGUGCAGGUAGGUAGG	chr1:249151745-249152050(-)$1	305	15	33	12.8989
UGUGAACAGAUAGUCACA	chr9:123638030-123638293(-)$1	263	4	22	14.3945
GACAGCUUUGGCAACCUG	chr11:5275503-5275744(-)$1	241	37	55	8.1874
CUGUGAGAUGGUGUGCAG	chr3:133467155-133467387(+)$1	232	127	145	12.4934
GGGCUGUAGUCUGGGUCC	chr12:125398972-125399243(-)$1	271	196	214	14.3945
GGGCCAAUGGGAGGGCCA	chr6:31804774-31804985(+)$1	211	177	195	13.2764
GCAGGUAAGAGCCCCUGA	chr16:30107137-30107408(-)$1	271	125	143	13.4819
ACCUCUUUCCGGUGAGGU	chr15:93426553-93426923(+)$1	370	285	303	14.3945
CCGUGUCCCCCCCCCGGG	chr19:49606565-49606838(+)$1	273	178	196	14.1360
cggcCCAGCAGUUGGCGG	chr19:59055857-59056094(+)$1	237	177	195	12.8255
GGGCUUUUCCUGUAGCCU	chr11:93466532-93466785(-)$1	253	41	59	14.3945
UCCUACAGCCCCCUAGGU	chr16:1419954-1420253(-)$1	299	107	125	13.2288
gaugauuggguguucaua	chr8:33370962-33371194(+)$1	232	53	71	13.5176
CGCCCGGUUGGGAGGGGG	chr7:5569351-5569625(-)$1	274	109	127	11.5041
GAGCCAGGUAGGCGGCAC	chr17:42401880-42402159(-)$1	279	74	92	13.3346
CCUGUAUUGUUUGAUAGG	chr12:56991291-56991554(-)$1	263	220	238	14.3945
AUUUUGCUUUCUAAAAAU	chr17:27050620-27050857(+)$1	237	185	203	14.3945
UCUGUGCAGGUAGGUAGG	chr1:249151853-249152142(-)$1	289	107	125	12.8989
AUGUUCCAGAUUUGAUAU	chr2:85770357-85770648(+)$1	291	19	37	12.4934
GCCUCAUUUACCAGAGGG	chr17:26903718-26903986(-)$1	268	68	86	13.0263
CCUGUAUUGUUUGAUAGG	chr12:56991227-56991487(-)$1	260	153	171	14.3945
AAGGGAAAGCAAGCCCUU	chr18:47017972-47018186(-)$1	214	52	70	14.3945
GCGGCGGUUGGUGGCCGU	chr1:155658321-155658569(-)$1	248	36	54	14.3945
AAGGGAAAGCAAGCCCUU	chr18:47017932-47018163(-)$1	231	29	47	14.3945
CACUGCAGUUCUUGGGGC	chr17:27047496-27047718(+)$1	222	155	173	8.1241
CUGGCGCUGUUAGGCCGG	chr19:41271110-41271360(+)$1	250	130	148	14.3945
CCCGCACAGGUAAGUGAG	chr19:54971678-54971949(+)$1	271	35	53	13.2491
AAGGGAAAGCAAGCCCUU	chr18:47017986-47018197(-)$1	211	63	81	14.3945
CCGUGUCCCCCCCCCGGG	chr19:49606638-49606885(+)$1	247	105	123	14.1360
CAGCUUGCUCCGUAGCUG	chr3:12881714-12881964(-)$1	250	109	127	12.4934
gaugauuggguguucaua	chr8:33370956-33371162(+)$1	206	59	77	13.5176
UAGGUGUCCCCUAACCUA	chr11:116707960-116708207(-)$1	247	148	166	14.3945
gaugauuggguguucaua	chr8:33370931-33371148(+)$1	217	84	102	13.5176
GGCCCGAGUCGUAGGGUC	chr15:93426497-93426753(+)$1	256	96	114	12.4934
CACUGCAGUUCUUGGGGC	chr17:27047482-27047696(+)$1	214	169	187	8.1241
CAGCCAUGGUAAGGGCUG	chr1:42643255-42643525(-)$1	270	136	154	12.9649
CAGCUUCCGGGGUGGUAG	chr16:1413724-1413989(-)$1	265	75	93	13.7578
GAGGCGAAGGACAGCUUA	chr5:179050127-179050360(-)$1	233	140	158	13.1333

#DB
(((((..........)))	chr19:5140266-5140589(+)$1	1	118	136	8.1874
...((........))..)	chr6:31508844-31509054(-)$1	1	45	63	11.3917
(..((........))..)	chr17:48827967-48828254(+)$1	1	45	63	11.5332
)((((........)))).	chr11:75111357-75111577(+)$1	1	87	105	12.1301
(((((........)))))	chr15:93426437-93426697(+)$1	1	156	174	12.4934
(((((........)))).	chr3:133465151-133465428(+)$1	1	170	188	13.1034
.((((........)))).	chr5:180670207-180670479(-)$1	1	218	236	12.5226
(((((........)))))	chr16:89981290-89981535(+)$1	1	49	67	13.2440
.((((........)))).	chr6:31804756-31804974(+)$1	1	195	213	11.2359
.((((........)))).	chr6:33171653-33171900(+)$1	1	185	203	11.2359
(((((........)).))	chr22:19929020-19929366(-)$1	1	275	293	11.8300
..(((........)))))	chr16:89980231-89980509(+)$1	1	12	30	13.2700
(((((........)))))	chr18:47017963-47018172(-)$1	1	38	56	14.3945
(.(..........)))))	chr17:27047518-27047734(+)$1	1	133	151	8.1241
.((.(........)))))	chr13:26828211-26828521(+)$1	1	210	228	11.8995
(((((........)))))	chr1:249151745-249152050(-)$1	1	15	33	12.8989
(((((........)))))	chr9:123638030-123638293(-)$1	1	4	22	14.3945
(((((..........)))	chr11:5275503-5275744(-)$1	1	37	55	8.1874
(((((........)))))	chr3:133467155-133467387(+)$1	1	127	145	12.4934
(((((........)))))	chr12:125398972-125399243(-)$1	1	196	214	14.3945
.((((........)))).	chr6:31804774-31804985(+)$1	1	177	195	13.2764
.((((........)))))	chr16:30107137-30107408(-)$1	1	125	143	13.4819
(((((........)))))	chr15:93426553-93426923(+)$1	1	285	303	14.3945
(((.(........)))))	chr19:49606565-49606838(+)$1	1	178	196	14.1360
(.(((........))).)	chr19:59055857-59056094(+)$1	1	177	195	12.8255
(((((........)))))	chr11:93466532-93466785(-)$1	1	41	59	14.3945
.((((........)))))	chr16:1419954-1420253(-)$1	1	107	125	13.2288
(.(((........)))))	chr8:33370962-33371194(+)$1	1	53	71	13.5176
(.(((........)))((	chr7:5569351-5569625(-)$1	1	109	127	11.5041
(.(((........))).)	chr17:42401880-42402159(-)$1	1	74	92	13.3346
(((((........)))))	chr12:56991291-56991554(-)$1	1	220	238	14.3945
(((((........)))))	chr17:27050620-27050857(+)$1	1	185	203	14.3945
(((((........)))))	chr1:249151853-249152142(-)$1	1	107	125	12.8989
(((((........)))))	chr2:85770357-85770648(+)$1	1	19	37	12.4934
.((((........)))).	chr17:26903718-26903986(-)$1	1	68	86	13.0263
(((((........)))))	chr12:56991227-56991487(-)$1	1	153	171	14.3945
(((((........)))))	chr18:47017972-47018186(-)$1	1	52	70	14.3945
(((((........)))))	chr1:155658321-155658569(-)$1	1	36	54	14.3945
(((((........)))))	chr18:47017932-47018163(-)$1	1	29	47	14.3945
(.(..........)))))	chr17:27047496-27047718(+)$1	1	155	173	8.1241
(((((........)))))	chr19:41271110-41271360(+)$1	1	130	148	14.3945
(.(((........))).)	chr19:54971678-54971949(+)$1	1	35	53	13.2491
(((((........)))))	chr18:47017986-47018197(-)$1	1	63	81	14.3945
(((.(........)))))	chr19:49606638-49606885(+)$1	1	105	123	14.1360
(((((........)))))	chr3:12881714-12881964(-)$1	1	109	127	12.4934
(.(((........)))))	chr8:33370956-33371162(+)$1	1	59	77	13.5176
(((((........)))))	chr11:116707960-116708207(-)$1	1	148	166	14.3945
(.(((........)))))	chr8:33370931-33371148(+)$1	1	84	102	13.5176
(((((........)))))	chr15:93426497-93426753(+)$1	1	96	114	12.4934
(.(..........)))))	chr17:27047482-27047696(+)$1	1	169	187	8.1241
(((((........)))))	chr1:42643255-42643525(-)$1	1	136	154	12.9649
(.(((........))).)	chr16:1413724-1413989(-)$1	1	75	93	13.7578
.((((........)))).	chr5:179050127-179050360(-)$1	1	140	158	13.1333

#PSSM
e : 0.41	f : 0.13	d : 0.07	= : 0.07	[ : 0.07	: : 0.03	! : 0.03	i : 0.03	" : 0.01	% : 0.01	b : 0.01	H : 0.01	g : 0.01	# : 0.01	
e : 0.33	d : 0.18	[ : 0.18	f : 0.11	! : 0.03	i : 0.03	" : 0.01	= : 0.01	b : 0.01	: : 0.01	g : 0.01	
e : 0.33	d : 0.18	c : 0.16	f : 0.11	a : 0.05	i : 0.03	" : 0.01	! : 0.01	= : 0.01	b : 0.01	g : 0.01	
e : 0.30	d : 0.18	c : 0.16	f : 0.09	b : 0.05	s : 0.05	[ : 0.05	i : 0.03	= : 0.01	g : 0.01	
e : 0.30	d : 0.18	c : 0.16	f : 0.09	b : 0.05	s : 0.05	a : 0.05	i : 0.03	= : 0.01	g : 0.01	
q : 0.90	s : 0.09	
q : 0.90	s : 0.09	
q : 0.90	s : 0.09	
q : 0.90	s : 0.09	
q : 0.90	s : 0.09	
q : 0.90	s : 0.09	
q : 0.90	s : 0.09	
q : 0.90	s : 0.09	
e : 0.26	d : 0.18	c : 0.16	a : 0.11	f : 0.09	b : 0.05	s : 0.03	i : 0.03	= : 0.01	g : 0.01	
e : 0.35	d : 0.18	c : 0.16	f : 0.09	b : 0.07	s : 0.03	i : 0.03	= : 0.01	g : 0.01	
e : 0.39	d : 0.18	c : 0.16	f : 0.09	2 : 0.03	i : 0.03	= : 0.01	] : 0.01	b : 0.01	g : 0.01	
e : 0.39	d : 0.20	f : 0.11	= : 0.07	] : 0.07	2 : 0.03	i : 0.03	g : 0.03	c : 0.01	
e : 0.43	f : 0.13	d : 0.07	= : 0.07	: : 0.05	4 : 0.05	i : 0.03	g : 0.03	a : 0.01	] : 0.01	c : 0.01	b : 0.01	2 : 0.01	

#score	676.5419912835865
#seq	53
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_UTR_m3_run2.txt

#BEAR
fffffftttttttttttfffff	chr17:47375269-47375556(-)$1	287	141	163	23.0248
ggggggtttttttttttggggg	chrX:20168228-20168499(-)$1	271	76	98	23.1815
ccddddtttttttttttdddd]	chr4:155525739-155526003(-)$1	264	164	186	22.3973
[eeeeeuuuuuuuuuuuueeee	chr3:149087155-149087377(-)$1	222	26	48	23.4129
ccddddtttttttttttddddD	chr5:42800114-42800369(-)$1	255	156	178	20.9967
##dddduuuuuuuuuuuudddd	chr16:18803251-18803520(-)$1	269	86	108	22.2629
eeeeewwwwwwwwwwwwwweee	chr1:43392313-43392552(-)$1	239	86	108	21.3891
iiiiiitttttttttttiiiii	chr15:44063592-44063838(+)$1	246	9	31	22.8766
hhhhhvvvvvvvvvvvvvhhhh	chr6:109688571-109688846(-)$1	275	128	150	22.2642
======uuuuuuuuuuuu====	chr10:5499474-5499764(+)$1	290	199	221	23.1262
[eeeeettttttttttteeeee	chr2:118867336-118867606(+)$1	270	117	139	23.2592
hhhhhwwwwwwwwwwwwwwhhh	chr3:52741857-52742090(+)$1	233	39	61	20.5015
gggggwwwwwwwwwwwwwwggg	chr2:21224449-21224656(-)$1	207	63	85	21.7545
!!dddduuuuuuuuuuuudddd	chr19:46029977-46030238(+)$1	261	203	225	22.6175
hhhhhhttttttttttthhhhh	chr8:22879301-22879559(-)$1	258	196	218	21.3645
eeeeeettttttttttteeeee	chr17:76793887-76794233(-)$1	346	246	268	22.9554
fffffftttttttttttfffff	chr1:92147085-92147331(-)$1	246	169	191	23.0248
hhhhhvvvvvvvvvvvvvhhhh	chr6:109688678-109688917(-)$1	239	199	221	22.2642
fffffftttttttttttfffff	chr7:44618426-44618672(-)$1	246	2	24	23.0248
fffffftttttttttttfffff	chr6:32948859-32949143(+)$1	284	145	167	23.0248
eeeccctttttttttttccc33	chr20:56141350-56141590(+)$1	240	122	144	22.6642
fffffvvvvvvvvvvvvvffff	chr2:175938061-175938338(-)$1	277	224	246	23.4027
[eeeeettttttttttteeeee	chr5:179157203-179157427(+)$1	224	58	80	23.2592
[eeeeeuuuuuuuuuuuueeee	chr3:149087179-149087394(-)$1	215	43	65	23.4129
ffffffuuuuuuuuuuuuffff	chr19:39327056-39327289(-)$1	233	113	135	23.1988
ffffffuuuuuuuuuuuuffff	chr7:94296431-94296697(+)$1	266	127	149	23.1988
#dddduuuuuuuuuuuudddd3	chr18:56997365-56997628(-)$1	263	107	129	21.7630
hhhhhhttttttttttthhhhh	chr9:100434997-100435256(+)$1	259	199	221	21.3645
iiiiiiuuuuuuuuuuuuiiii	chr18:71920462-71920753(-)$1	291	224	246	23.2687
ffffffuuuuuuuuuuuuffff	chr2:209101414-209101681(-)$1	267	49	71	23.1988
hhhhhvvvvvvvvvvvvvhhhh	chr2:188331325-188331595(-)$1	270	108	130	22.2642
!eeeeettttttttttteeeee	chr2:20449841-20450134(-)$1	293	104	126	23.1714
fffffvvvvvvvvvvvvvffff	chr10:102123823-102124036(+)$1	213	54	76	23.4027
fffffvvvvvvvvvvvvvffff	chr10:102123846-102124058(+)$1	212	31	53	23.4027
fffffftttttttttttfffff	chr3:128338897-128339150(-)$1	253	187	209	23.0248
fffffftttttttttttfffff	chr3:129033763-129034013(-)$1	250	70	92	23.0248
iiiiiwwwwwwwwwwwwwwiii	chr4:155506379-155506633(-)$1	254	141	163	21.5907
ddddvvvvvvvvvvvvvddddF	chr14:50361239-50361528(+)$1	289	149	171	20.8320
[eeeeettttttttttteeeee	chr5:74657043-74657293(+)$1	250	47	69	23.2592
bb[cccuuuuuuuuuuuuccc2	chr17:61671172-61671441(+)$1	269	229	251	22.1608
ffddddtttttttttttdddd]	chr10:54076720-54076969(+)$1	249	197	219	22.5159
[ddddvvvvvvvvvvvvvdddd	chr19:48886109-48886355(-)$1	246	130	152	22.8738
"dddduuuuuuuuuuuudddd3	chr19:16212247-16212543(+)$1	296	66	88	21.7991
ggggggtttttttttttggggg	chr10:98280840-98281093(-)$1	253	118	140	23.1815
fff[bbtttttttttttbb]ff	chr6:119500504-119500743(-)$1	239	39	61	21.9331
hhhhhvvvvvvvvvvvvvhhhh	chr13:76432148-76432419(+)$1	271	18	40	22.2642
[ddddvvvvvvvvvvvvvdddd	chr1:25568843-25569124(-)$1	281	175	197	22.8738
"""cccuuuuuuuuuuuucccd	chrX:152916627-152916832(+)$1	205	69	91	22.4987
ffffffuuuuuuuuuuuuffff	chr2:54895733-54895957(+)$1	224	199	221	23.1988
gggggwwwwwwwwwwwwwwggg	chr12:57504818-57505161(-)$1	343	69	91	21.7545
eeeeeettttttttttteeeee	chr1:230838532-230838752(-)$1	220	22	44	22.9554
=cccbbuuuuuuuuuuuubb]c	chr8:91636425-91636675(-)$1	250	91	113	21.8484
eeeeevvvvvvvvvvvvveeee	chr17:3511540-3511807(-)$1	267	91	113	23.3264
!!dddduuuuuuuuuuuudddd	chr11:70265873-70266133(+)$1	260	212	234	22.6175
iiiiiiuuuuuuuuuuuuiiii	chr12:106632168-106632405(-)$1	237	5	27	23.2687
c[ddddtttttttttttdddd]	chr16:56643224-56643471(+)$1	247	201	223	22.4644
gggggwwwwwwwwwwwwwwggg	chr2:21224462-21224673(-)$1	211	80	102	21.7545
:eeeeettttttttttteeeee	chr18:46388950-46389225(+)$1	275	251	273	21.9269
ffffffuuuuuuuuuuuuffff	chr9:127998641-127998877(-)$1	236	54	76	23.1988
fffffftttttttttttfffff	chr2:11319827-11320075(-)$1	248	65	87	23.0248
fffffvvvvvvvvvvvvvffff	chr4:74321319-74321546(+)$1	227	153	175	23.4027
fffffvvvvvvvvvvvvvffff	chr11:130014396-130014634(+)$1	238	1	23	23.4027
gggggguuuuuuuuuuuugggg	chr19:1257826-1258081(+)$1	255	88	110	23.4495
[ddddvvvvvvvvvvvvvdddd	chr7:94298447-94298674(+)$1	227	176	198	22.8738
:eeeeeuuuuuuuuuuuueeee	chr12:120899629-120899876(-)$1	247	216	238	22.0806
hhhhhhttttttttttthhhhh	chr17:25635628-25635859(+)$1	231	180	202	21.3645

#otherMatches

#Seq PSSM
UUUCCUUUGUACUAAUCGGGAA	chr17:47375269-47375556(-)$1	287	141	163	23.0248
GAAAAAAAUCACAAAUAUUUUU	chrX:20168228-20168499(-)$1	271	76	98	23.1815
UGUAUUUCCAAAUUACUGAUAU	chr4:155525739-155526003(-)$1	264	164	186	22.3973
UUUGGAUAAAAAUAACAUUCCA	chr3:149087155-149087377(-)$1	222	26	48	23.4129
AUACUCUUCUAAAACUUGAGUG	chr5:42800114-42800369(-)$1	255	156	178	20.9967
UAAUCAUUCUUAACUUCUUGGU	chr16:18803251-18803520(-)$1	269	86	108	22.2629
CUGAUUUUGUUAUUUUUAUAUC	chr1:43392313-43392552(-)$1	239	86	108	21.3891
GGACCAGUUUAUGUUUGUGGUU	chr15:44063592-44063838(+)$1	246	9	31	22.8766
GAGGUUUACUUCUCCCUUGCCU	chr6:109688571-109688846(-)$1	275	128	150	22.2642
uauguguguguguguguguaua	chr10:5499474-5499764(+)$1	290	199	221	23.1262
GUUAUUCAUUUAGAACAAAUAA	chr2:118867336-118867606(+)$1	270	117	139	23.2592
AGAGCUAAAACCACCUAAUGCU	chr3:52741857-52742090(+)$1	233	39	61	20.5015
AAGAAAUCUUCAUUUAUUCUUC	chr2:21224449-21224656(-)$1	207	63	85	21.7545
CCUUCACCUUUAGCUUCUUGAA	chr19:46029977-46030238(+)$1	261	203	225	22.6175
GGGGGAAGAAGAAGAAGUCCCC	chr8:22879301-22879559(-)$1	258	196	218	21.3645
CAGGACUACCGUGGUUUGUUCU	chr17:76793887-76794233(-)$1	346	246	268	22.9554
UCUUUUCCAUCGUGUUAAAAAG	chr1:92147085-92147331(-)$1	246	169	191	23.0248
GAGGUUUACUUCUCCCUUGCCU	chr6:109688678-109688917(-)$1	239	199	221	22.2642
GUUCACUUAAUGGCUUUGUGAA	chr7:44618426-44618672(-)$1	246	2	24	23.0248
UGGGGGUUUCAGUCAUCUCCCC	chr6:32948859-32949143(+)$1	284	145	167	23.0248
UUCUUGGAAAAAAAUUACAAAA	chr20:56141350-56141590(+)$1	240	122	144	22.6642
AUGAUUGCAGUUUAAAAUGUCA	chr2:175938061-175938338(-)$1	277	224	246	23.4027
UGAAGGCUGUAUCUAUUUUUUU	chr5:179157203-179157427(+)$1	224	58	80	23.2592
UUUGGAUAAAAAUAACAUUCCA	chr3:149087179-149087394(-)$1	215	43	65	23.4129
GGGAGAGGGGAACUGUUAUCUC	chr19:39327056-39327289(-)$1	233	113	135	23.1988
GCAGGAUUUGUGUCAUUUUCCU	chr7:94296431-94296697(+)$1	266	127	149	23.1988
UAAGGAAUUUAUUUCUCCCUUU	chr18:56997365-56997628(-)$1	263	107	129	21.7630
ucaggagauugagaccauccug	chr9:100434997-100435256(+)$1	259	199	221	21.3645
GCACCGUGUUUGCCUGUUUGGU	chr18:71920462-71920753(-)$1	291	224	246	23.2687
UUGCCACCUUUGUGAACAUGGC	chr2:209101414-209101681(-)$1	267	49	71	23.1988
AUUGCUUAUUCUAGGUCUGUAA	chr2:188331325-188331595(-)$1	270	108	130	22.2642
UAUGAACCAGCUUUCUUUUUAU	chr2:20449841-20450134(-)$1	293	104	126	23.1714
UUUUUUUUUUUUUGGGUUAAAA	chr10:102123823-102124036(+)$1	213	54	76	23.4027
UUUUUUUUUUUUUGGGUUAAAA	chr10:102123846-102124058(+)$1	212	31	53	23.4027
CUGAAGUCUAAGAUAUUUUUCA	chr3:128338897-128339150(-)$1	253	187	209	23.0248
CAACGAUGUAGCGUUUUUCGUU	chr3:129033763-129034013(-)$1	250	70	92	23.0248
guauucccaaaugccuaacagu	chr4:155506379-155506633(-)$1	254	141	163	21.5907
CAGUUUCCUUAUCACUUGCUGU	chr14:50361239-50361528(+)$1	289	149	171	20.8320
CUAAGCCAACUUUAAUUGCUUA	chr5:74657043-74657293(+)$1	250	47	69	23.2592
GCUUGUAAUAAAAUUUUAACAC	chr17:61671172-61671441(+)$1	269	229	251	22.1608
UGAAGUAAAUCAUUUCAGCUUA	chr10:54076720-54076969(+)$1	249	197	219	22.5159
CAGGGUCCAAGAUCUUUUCCCU	chr19:48886109-48886355(-)$1	246	130	152	22.8738
UUGAGCACCAGUUAAAUCUCAU	chr19:16212247-16212543(+)$1	296	66	88	21.7991
GUGGGCUUUUACAUCUUGCCUA	chr10:98280840-98281093(-)$1	253	118	140	23.1815
UUAAACUGAAUAGAAUUGUAUA	chr6:119500504-119500743(-)$1	239	39	61	21.9331
UUUUUGCUUUUUUUUUAAAAAA	chr13:76432148-76432419(+)$1	271	18	40	22.2642
AAAUACUUAACACUCAAAUAUU	chr1:25568843-25569124(-)$1	281	175	197	22.8738
CUAUGCUUGUUUGUUUUUGUAA	chrX:152916627-152916832(+)$1	205	69	91	22.4987
UUUAAUGAAAUUAUAUAGAUUA	chr2:54895733-54895957(+)$1	224	199	221	23.1988
guguguguguguguguguguau	chr12:57504818-57505161(-)$1	343	69	91	21.7545
CCGUUUCUCCUUGGUCUAAGUG	chr1:230838532-230838752(-)$1	220	22	44	22.9554
UAUCUCUUUUUUUGCUAUGAUG	chr8:91636425-91636675(-)$1	250	91	113	21.8484
gucuuuuuuuacuucauuaggg	chr17:3511540-3511807(-)$1	267	91	113	23.3264
AAUGCCCAACUUGAAAACGGCA	chr11:70265873-70266133(+)$1	260	212	234	22.6175
GGAAAAUUAAUUUUACUUUUUU	chr12:106632168-106632405(-)$1	237	5	27	23.2687
CUUUAUAUGCCUUAAAAAUAAC	chr16:56643224-56643471(+)$1	247	201	223	22.4644
AAGAAAUCUUCAUUUAUUCUUC	chr2:21224462-21224673(-)$1	211	80	102	21.7545
AGUCUGUUUUCUGGCAUCAGAC	chr18:46388950-46389225(+)$1	275	251	273	21.9269
CUUUUGUUAGGAAAAAAUUGAA	chr9:127998641-127998877(-)$1	236	54	76	23.1988
GAAAAAAAUUGCACCCCUUUUU	chr2:11319827-11320075(-)$1	248	65	87	23.0248
AAAUAAAAUAUCUCCAAAUGUU	chr4:74321319-74321546(+)$1	227	153	175	23.4027
AAAGCUUUGAACAAUUGUGUUU	chr11:130014396-130014634(+)$1	238	1	23	23.4027
UUCCUUCAUUUCUUUAACAAGG	chr19:1257826-1258081(+)$1	255	88	110	23.4495
AUUUCAAAUAAACUCGGAGGGA	chr7:94298447-94298674(+)$1	227	176	198	22.8738
AGCAGUGAAACAUUUUAAACUG	chr12:120899629-120899876(-)$1	247	216	238	22.0806
UUUUAGUUAAUUAGUUUUUGGA	chr17:25635628-25635859(+)$1	231	180	202	21.3645

#DB
((((((...........)))))	chr17:47375269-47375556(-)$1	1	141	163	23.0248
((((((...........)))))	chrX:20168228-20168499(-)$1	1	76	98	23.1815
((((((...........)))).	chr4:155525739-155526003(-)$1	1	164	186	22.3973
.(((((............))))	chr3:149087155-149087377(-)$1	1	26	48	23.4129
))((((...........)))))	chr5:42800114-42800369(-)$1	1	156	178	20.9967
..((((............))))	chr16:18803251-18803520(-)$1	1	86	108	22.2629
(((((..............)))	chr1:43392313-43392552(-)$1	1	86	108	21.3891
((((((...........)))))	chr15:44063592-44063838(+)$1	1	9	31	22.8766
(((((.............))))	chr6:109688571-109688846(-)$1	1	128	150	22.2642
((((((............))))	chr10:5499474-5499764(+)$1	1	199	221	23.1262
.(((((...........)))))	chr2:118867336-118867606(+)$1	1	117	139	23.2592
(((((..............)))	chr3:52741857-52742090(+)$1	1	39	61	20.5015
(((((..............)))	chr2:21224449-21224656(-)$1	1	63	85	21.7545
..((((............))))	chr19:46029977-46030238(+)$1	1	203	225	22.6175
((((((...........)))))	chr8:22879301-22879559(-)$1	1	196	218	21.3645
)(((((...........)))))	chr17:76793887-76794233(-)$1	1	246	268	22.9554
((((((...........)))))	chr1:92147085-92147331(-)$1	1	169	191	23.0248
(((((.............))))	chr6:109688678-109688917(-)$1	1	199	221	22.2642
((((((...........)))))	chr7:44618426-44618672(-)$1	1	2	24	23.0248
((((((...........)))))	chr6:32948859-32949143(+)$1	1	145	167	23.0248
((((((...........)))..	chr20:56141350-56141590(+)$1	1	122	144	22.6642
(((((.............))))	chr2:175938061-175938338(-)$1	1	224	246	23.4027
.(((((...........)))))	chr5:179157203-179157427(+)$1	1	58	80	23.2592
.(((((............))))	chr3:149087179-149087394(-)$1	1	43	65	23.4129
((((((............))))	chr19:39327056-39327289(-)$1	1	113	135	23.1988
((((((............))))	chr7:94296431-94296697(+)$1	1	127	149	23.1988
.((((............)))).	chr18:56997365-56997628(-)$1	1	107	129	21.7630
((((((...........)))))	chr9:100434997-100435256(+)$1	1	199	221	21.3645
((((((............))))	chr18:71920462-71920753(-)$1	1	224	246	23.2687
((((((............))))	chr2:209101414-209101681(-)$1	1	49	71	23.1988
(((((.............))))	chr2:188331325-188331595(-)$1	1	108	130	22.2642
.(((((...........)))))	chr2:20449841-20450134(-)$1	1	104	126	23.1714
(((((.............))))	chr10:102123823-102124036(+)$1	1	54	76	23.4027
(((((.............))))	chr10:102123846-102124058(+)$1	1	31	53	23.4027
((((((...........)))))	chr3:128338897-128339150(-)$1	1	187	209	23.0248
((((((...........)))))	chr3:129033763-129034013(-)$1	1	70	92	23.0248
(((((..............)))	chr4:155506379-155506633(-)$1	1	141	163	21.5907
((((.............))))(	chr14:50361239-50361528(+)$1	1	149	171	20.8320
.(((((...........)))))	chr5:74657043-74657293(+)$1	1	47	69	23.2592
((.(((............))).	chr17:61671172-61671441(+)$1	1	229	251	22.1608
((((((...........)))).	chr10:54076720-54076969(+)$1	1	197	219	22.5159
.((((.............))))	chr19:48886109-48886355(-)$1	1	130	152	22.8738
.((((............)))).	chr19:16212247-16212543(+)$1	1	66	88	21.7991
((((((...........)))))	chr10:98280840-98281093(-)$1	1	118	140	23.1815
(((.((...........)).))	chr6:119500504-119500743(-)$1	1	39	61	21.9331
(((((.............))))	chr13:76432148-76432419(+)$1	1	18	40	22.2642
.((((.............))))	chr1:25568843-25569124(-)$1	1	175	197	22.8738
...(((............))))	chrX:152916627-152916832(+)$1	1	69	91	22.4987
((((((............))))	chr2:54895733-54895957(+)$1	1	199	221	23.1988
(((((..............)))	chr12:57504818-57505161(-)$1	1	69	91	21.7545
((((((...........)))))	chr1:230838532-230838752(-)$1	1	22	44	22.9554
((((((............)).)	chr8:91636425-91636675(-)$1	1	91	113	21.8484
(((((.............))))	chr17:3511540-3511807(-)$1	1	91	113	23.3264
..((((............))))	chr11:70265873-70266133(+)$1	1	212	234	22.6175
((((((............))))	chr12:106632168-106632405(-)$1	1	5	27	23.2687
(.((((...........)))).	chr16:56643224-56643471(+)$1	1	201	223	22.4644
(((((..............)))	chr2:21224462-21224673(-)$1	1	80	102	21.7545
.(((((...........)))))	chr18:46388950-46389225(+)$1	1	251	273	21.9269
((((((............))))	chr9:127998641-127998877(-)$1	1	54	76	23.1988
((((((...........)))))	chr2:11319827-11320075(-)$1	1	65	87	23.0248
(((((.............))))	chr4:74321319-74321546(+)$1	1	153	175	23.4027
(((((.............))))	chr11:130014396-130014634(+)$1	1	1	23	23.4027
((((((............))))	chr19:1257826-1258081(+)$1	1	88	110	23.4495
.((((.............))))	chr7:94298447-94298674(+)$1	1	176	198	22.8738
.(((((............))))	chr12:120899629-120899876(-)$1	1	216	238	22.0806
((((((...........)))))	chr17:25635628-25635859(+)$1	1	180	202	21.3645

#PSSM
f : 0.28	[ : 0.12	h : 0.12	g : 0.09	e : 0.07	i : 0.06	c : 0.04	! : 0.04	# : 0.03	= : 0.03	" : 0.03	: : 0.03	d : 0.01	b : 0.01	
f : 0.28	e : 0.19	h : 0.12	g : 0.09	d : 0.09	i : 0.06	c : 0.04	! : 0.03	# : 0.01	= : 0.01	b : 0.01	" : 0.01	[ : 0.01	
f : 0.27	d : 0.19	e : 0.19	h : 0.12	g : 0.09	i : 0.06	= : 0.01	[ : 0.01	" : 0.01	c : 0.01	
f : 0.25	d : 0.19	e : 0.18	h : 0.12	g : 0.09	i : 0.06	c : 0.06	= : 0.01	[ : 0.01	
f : 0.25	d : 0.18	e : 0.18	h : 0.12	g : 0.09	i : 0.06	c : 0.04	b : 0.03	= : 0.01	v : 0.01	
v : 0.21	f : 0.18	e : 0.15	d : 0.10	w : 0.09	g : 0.04	i : 0.04	h : 0.04	c : 0.04	u : 0.03	b : 0.03	= : 0.01	
t : 0.39	u : 0.30	v : 0.21	w : 0.09	
t : 0.39	u : 0.30	v : 0.21	w : 0.09	
t : 0.39	u : 0.30	v : 0.21	w : 0.09	
t : 0.39	u : 0.30	v : 0.21	w : 0.09	
t : 0.39	u : 0.30	v : 0.21	w : 0.09	
t : 0.39	u : 0.30	v : 0.21	w : 0.09	
t : 0.39	u : 0.30	v : 0.21	w : 0.09	
t : 0.39	u : 0.30	v : 0.21	w : 0.09	
t : 0.39	u : 0.30	v : 0.21	w : 0.09	
t : 0.39	u : 0.30	v : 0.21	w : 0.09	
t : 0.39	u : 0.30	v : 0.21	w : 0.09	
u : 0.27	v : 0.19	f : 0.10	d : 0.10	e : 0.10	w : 0.09	h : 0.04	g : 0.03	i : 0.01	c : 0.01	b : 0.01	
f : 0.25	d : 0.19	e : 0.16	h : 0.10	w : 0.09	g : 0.04	i : 0.04	c : 0.04	b : 0.03	= : 0.01	
f : 0.25	d : 0.19	e : 0.18	h : 0.12	g : 0.09	i : 0.06	c : 0.04	= : 0.01	] : 0.01	b : 0.01	
f : 0.27	d : 0.19	e : 0.18	h : 0.12	g : 0.09	i : 0.06	c : 0.03	= : 0.01	3 : 0.01	] : 0.01	
f : 0.27	e : 0.18	h : 0.12	d : 0.10	g : 0.09	i : 0.06	] : 0.04	3 : 0.04	D : 0.01	= : 0.01	F : 0.01	2 : 0.01	c : 0.01	

#score	1491.4445138346518
#seq	66
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_CDS_m2_run1.txt

#BEAR
dffffffuuuuuuuuuuuuffffff]	chr5:179143157-179143389(+)$1	232	84	110	22.7973
gggggggtttttttttttgggggggd	chr20:43129622-43129883(-)$1	261	212	238	22.0866
eee[ccctttttttttttccc]eeee	chr2:158622408-158622722(-)$1	314	111	137	22.3522
ddccc[attttttttttta]ccc]dd	chr7:148701025-148701307(-)$1	282	253	279	22.1292
f!!ddddtttttttttttddddffff	chr1:203677057-203677318(+)$1	261	156	182	22.0311
""cccvvvvvvvvvvvvvccc333ff	chr1:31212599-31212868(-)$1	269	70	96	21.7174
b[dddduuuuuuuuuuuudddd]bb:	chr5:131531004-131531270(-)$1	266	1	27	21.0925
ee[cccvvvvvvvvvvvvvccc]eee	chr1:173454413-173454633(+)$1	220	83	109	22.3800
!!ddddattttttttttta]ddddbb	chr12:50146706-50146958(+)$1	252	92	118	21.9920
::eeeeeuuuuuuuuuuuueeeee::	chr19:45422329-45422532(+)$1	203	30	56	19.1630
eeeeyyyyyyyyyyyyyyyyeeeeee	chrX:55047447-55047689(-)$1	242	78	104	22.3725
[ffffffuuuuuuuuuuuuffffff]	chr9:5824990-5825221(-)$1	231	93	119	23.0927
[eeeeeuuuuuuuuuuuueeeee333	chr2:85779993-85780284(-)$1	291	139	165	23.0228
gggggggtttttttttttggggggg]	chr2:158167654-158167913(+)$1	259	225	251	22.3757
eeee[bbvvvvvvvvvvvvvbbeeee	chr8:126017764-126018036(+)$1	272	90	116	21.2640
!ffffffuuuuuuuuuuuuffffff2	chr11:62393706-62393911(-)$1	205	20	46	22.8927
'''ddddtttttttttttddddffff	chr1:196658554-196658844(+)$1	290	184	210	20.1170
eeeeyyyyyyyyyyyyyyyyeeeee:	chr3:128356632-128356882(-)$1	250	79	105	21.6288
gggg[bbtttttttttttbbgggggg	chr15:44045971-44046200(+)$1	229	199	225	22.4655
ffffyyyyyyyyyyyyyyyyffffff	chr11:77817815-77818079(-)$1	264	204	230	22.5061
ffffffwwwwwwwwwwwwwwffffff	chr12:74932022-74932274(+)$1	252	187	213	22.0287
eeeeexxxxxxxxxxxxxxxeeeee3	chr12:58114465-58114701(+)$1	236	79	105	18.7145
###cccuuuuuuuuuuuuccchhhhh	chr19:13051566-13051778(+)$1	212	90	116	22.2266
d####bbtttttttttttbb22dddd	chr5:10394784-10394995(+)$1	211	51	77	20.1658
fffffxxxxxxxxxxxxxxxffffff	chr9:102780461-102780696(-)$1	235	16	42	18.6216
cc[ddddtttttttttttddddccc]	chr2:172821843-172822139(+)$1	296	261	287	21.9915
gggggxxxxxxxxxxxxxxxgggggg	chrX:118370512-118370755(+)$1	243	161	187	19.2554
="""cccuuuuuuuuuuuuccc8888	chr12:50152365-50152576(+)$1	211	29	55	21.6888
$eeeeeuuuuuuuuuuuueeeee444	chr1:54507363-54507579(-)$1	216	113	139	22.4582
!ddddwwwwwwwwwwwwwwddddbb]	chr5:179149912-179150120(+)$1	208	125	151	21.5505
"ffffffuuuuuuuuuuuuffffffd	chr12:104335367-104335577(+)$1	210	91	117	22.7336
eeeewwwwwwwwwwwwwweeeee:bb	chr2:65325057-65325289(-)$1	232	13	39	19.6664
FFFddddtttttttttttddddgggg	chr10:76980400-76980636(+)$1	236	11	37	20.8949
e!!ddddtttttttttttdddd22ee	chr8:126015480-126015771(+)$1	291	7	33	21.5060
hhhhhhwwwwwwwwwwwwwwhhhhhh	chr13:113964993-113965284(+)$1	291	8	34	20.1546
ffffffwwwwwwwwwwwwwwffffff	chr8:98831355-98831566(+)$1	211	127	153	22.0287
[bb[cccvvvvvvvvvvvvvcccbb4	chrX:47001991-47002244(-)$1	253	64	90	21.4296
"fffffftttttttttttffffff33	chr1:179316647-179316934(+)$1	287	221	247	21.9356
fccc[bbuuuuuuuuuuuubb]ccc:	chr11:57182305-57182573(-)$1	268	96	122	21.8151
gggggxxxxxxxxxxxxxxxgggggg	chrX:119581596-119581869(-)$1	273	20	46	19.2554
!cccyyyyyyyyyyyyyyyyccc22c	chr1:19549817-19550085(-)$1	268	22	48	22.4013
ccc!!bbvvvvvvvvvvvvvbb]ccc	chr12:25031363-25031618(-)$1	255	12	38	21.3607
iiiiiiitttttttttttiiiiiiii	chr17:26890731-26891016(-)$1	285	46	72	21.8285
!!eeeeettttttttttteeeeeccc	chr2:63833894-63834228(+)$1	334	191	217	22.3013
ffff[bbtttttttttttbbffffff	chr19:45375046-45375325(+)$1	279	30	56	21.9203
ggggggguuuuuuuuuuuuggggggg	chr11:62652008-62652244(+)$1	236	43	69	23.3728
hhhhhhhuuuuuuuuuuuuhhhhhhh	chr2:55200899-55201103(-)$1	204	73	99	20.4003
:ddddwwwwwwwwwwwwwwdddd:ee	chr1:167515277-167515523(-)$1	246	162	188	19.5429
ffffyyyyyyyyyyyyyyyyffffff	chr10:7840904-7841149(+)$1	245	143	169	22.5061
ggggggvvvvvvvvvvvvvggggggg	chr19:10394291-10394538(+)$1	247	62	88	22.6142
ii[cccuuuuuuuuuuuuccciiiii	chr10:102116201-102116413(+)$1	212	177	203	23.2976
iiii[bbwwwwwwwwwwwwwwbb22i	chr8:11687685-11688000(+)$1	315	135	161	20.5708
c[a[cccuuuuuuuuuuuuccca]cc	chr6:109690109-109690321(-)$1	212	33	59	23.4673
!!dddduuuuuuuuuuuudddd4444	chr1:198687163-198687487(+)$1	324	271	297	22.5614
dddd[bbyyyyyyyyyyyyyyyybb2	chr6:122773065-122773301(-)$1	236	138	164	19.8071
gggggxxxxxxxxxxxxxxxgggggg	chr11:43859764-43860037(+)$1	273	60	86	19.2554
d!!dddduuuuuuuuuuuudddd>>>	chr3:53919750-53920005(-)$1	255	74	100	22.3417
eeeeewwwwwwwwwwwwwweeeee:E	chr14:68151805-68152022(-)$1	217	43	69	20.1121

#otherMatches

#Seq PSSM
UUGGGAUGAAAGACCAAAAAUCCCAG	chr5:179143157-179143389(+)$1	232	84	110	22.7973
UGGAUGGCCUAUAAAAUCUCAUCCAU	chr20:43129622-43129883(-)$1	261	212	238	22.0866
GCUUACUACUCUGGAUACAGUUAGCU	chr2:158622408-158622722(-)$1	314	111	137	22.3522
CCCCAGCGACCGCUAUAAGGUGGAGG	chr7:148701025-148701307(-)$1	282	253	279	22.1292
UUAUACCUCCAAGAUUCUGGUAAGCA	chr1:203677057-203677318(+)$1	261	156	182	22.0311
GGCCUACCUUUCAGAACCGGGAGAAG	chr1:31212599-31212868(-)$1	269	70	96	21.7174
AGGAGGGCAAUCUAUAUACCUUGUCA	chr5:131531004-131531270(-)$1	266	1	27	21.0925
CAGGAUAUCAAUGCUUACAAUUGUGA	chr1:173454413-173454633(+)$1	220	83	109	22.3800
UUUGCCCUUUGUAUGUUUGUGGCGGC	chr12:50146706-50146958(+)$1	252	92	118	21.9920
AGCAGGCAGAAUUUGGACAGCCUGGG	chr19:45422329-45422532(+)$1	203	30	56	19.1630
GGGCUGAUGCAUAUCCCUUUGCCCAA	chrX:55047447-55047689(-)$1	242	78	104	22.3725
AUUUCUCUUUAAUGGUGCUGAGGAAA	chr9:5824990-5825221(-)$1	231	93	119	23.0927
AUGGUGCACUCCCGCUCCCACCAGCA	chr2:85779993-85780284(-)$1	291	139	165	23.0228
UAUAGUAAACCCAUUAAAUACUGUGA	chr2:158167654-158167913(+)$1	259	225	251	22.3757
UCUGUCAGAAAACAAUCAAGUGCAGA	chr8:126017764-126018036(+)$1	272	90	116	21.2640
AUGAUGGGCACACGUUCAACUAUCAG	chr11:62393706-62393911(-)$1	205	20	46	22.8927
GCCUCAGUAAGUAAACCUCUGAACUG	chr1:196658554-196658844(+)$1	290	184	210	20.1170
GGGAACCAUUAUUUCUACUCUCCCUA	chr3:128356632-128356882(-)$1	250	79	105	21.6288
UUACAUGGAAAAAAAUAACAGUAAUA	chr15:44045971-44046200(+)$1	229	199	225	22.4655
CUUCUAGCAAUUCUCCCAAUGAGGUA	chr11:77817815-77818079(-)$1	264	204	230	22.5061
GGCCAGGACAAUAACAUAGACUGGUC	chr12:74932022-74932274(+)$1	252	187	213	22.0287
CACCUCUACCCUCUCCCACCAGGUGC	chr12:58114465-58114701(+)$1	236	79	105	18.7145
UAUGCCUAUGAUAACUUUGGCGUGCU	chr19:13051566-13051778(+)$1	212	90	116	22.2266
UUAAUGCUUAUCGUUUUUGUUUAUUU	chr5:10394784-10394995(+)$1	211	51	77	20.1658
UGGAUAAGUAUAUAUUUCAAGUCUGU	chr9:102780461-102780696(-)$1	235	16	42	18.6216
UGUCAGUGAUUUAUUCUAACUGCAGU	chr2:172821843-172822139(+)$1	296	261	287	21.9915
GGCUUGGAGACAAAAGAAGGGGGCCC	chrX:118370512-118370755(+)$1	243	161	187	19.2554
GAAUGGCUUUAAUGGGAUUGCUUUAC	chr12:50152365-50152576(+)$1	211	29	55	21.6888
AUCCAGUACGCACCACAUUUGGAGCA	chr1:54507363-54507579(-)$1	216	113	139	22.4582
GUGCAUUUGUGUCUGUUAUUGUAAGG	chr5:179149912-179150120(+)$1	208	125	151	21.5505
AAUACCUCAAUUUUGUCAAGGGUGUG	chr12:104335367-104335577(+)$1	210	91	117	22.7336
GUUUUUUUUUUUCCACUUAGACUUGC	chr2:65325057-65325289(-)$1	232	13	39	19.6664
ACUGCAGUUUAUUUAAGUCUGUUUUG	chr10:76980400-76980636(+)$1	236	11	37	20.8949
AGAAUGACCCAGAAGUUAUCAUCGUG	chr8:126015480-126015771(+)$1	291	7	33	21.5060
AUUUUUUUUUUUUUUAAUCUAGAAAU	chr13:113964993-113965284(+)$1	291	8	34	20.1546
UACUUAUAGUCUAAAAAUAUUAAGUG	chr8:98831355-98831566(+)$1	211	127	153	22.0287
CAGCAGGAAGCCCUCAUUGACCUCUA	chrX:47001991-47002244(-)$1	253	64	90	21.4296
UUAUUAACUUCUUCAUUAUUAGUAUU	chr1:179316647-179316934(+)$1	287	221	247	21.9356
UGUGGCACUACCUCUUCAUUGGCACU	chr11:57182305-57182573(-)$1	268	96	122	21.8151
AGUGGCACCCACCAUACACACCACUG	chrX:119581596-119581869(-)$1	273	20	46	19.2554
AGCCUGAACCCCAACCUGCUGGCCGU	chr1:19549817-19550085(-)$1	268	22	48	22.4013
UAUUAUGUUUUUCAUUCUUUCAGGUA	chr12:25031363-25031618(-)$1	255	12	38	21.3607
CAUGAUGCUUGCCCUUUUCAUUGUGC	chr17:26890731-26891016(-)$1	285	46	72	21.8285
AAAGAAAGUGCUUUUGAAUUUCUUUC	chr2:63833894-63834228(+)$1	334	191	217	22.3013
GGAGUGACGCACCCCCUCUCCUCCUC	chr19:45375046-45375325(+)$1	279	30	56	21.9203
GCUAGAGCCUCAUAAUAUUCUCUGGU	chr11:62652008-62652244(+)$1	236	43	69	23.3728
UGAAAAGUUGUAUAUUUCCCUUUUCA	chr2:55200899-55201103(-)$1	204	73	99	20.4003
AGAAUAUUAUAAUGUCACAGUUCAGU	chr1:167515277-167515523(-)$1	246	162	188	19.5429
CAUUCCUCCAUUGCUAAACAGAUGAA	chr10:7840904-7841149(+)$1	245	143	169	22.5061
AGAGAUCACCAUGGAGCCAAUUUCUC	chr19:10394291-10394538(+)$1	247	62	88	22.6142
GUUCGUUGCCACUUUCUUGCGAUAUG	chr10:102116201-102116413(+)$1	212	177	203	23.2976
GUGCCUGAAUGAACUUAUAACCAAUG	chr8:11687685-11688000(+)$1	315	135	161	20.5708
UGCAUCUUUAAAUUACAAUAGAGGAC	chr6:109690109-109690321(-)$1	212	33	59	23.4673
AAAGUAUGCUCUCUACAUUACUAUAG	chr1:198687163-198687487(+)$1	324	271	297	22.5614
UAGUUGCUAUCGUCCUGUUCUUUGUC	chr6:122773065-122773301(-)$1	236	138	164	19.8071
CUGUGGCUUCACUCCUUUUACACGGU	chr11:43859764-43860037(+)$1	273	60	86	19.2554
GAAACCCUCCCCGAAGAAUGGGUAGA	chr3:53919750-53920005(-)$1	255	74	100	22.3417
GGGCUAUUCUGCAAAAUCAAGUCCUG	chr14:68151805-68152022(-)$1	217	43	69	20.1121

#DB
(((((((............)))))).	chr5:179143157-179143389(+)$1	1	84	110	22.7973
(((((((...........))))))))	chr20:43129622-43129883(-)$1	1	212	238	22.0866
(((.(((...........))).))))	chr2:158622408-158622722(-)$1	1	111	137	22.3522
(((((.(...........).))).))	chr7:148701025-148701307(-)$1	1	253	279	22.1292
(..((((...........))))))))	chr1:203677057-203677318(+)$1	1	156	182	22.0311
..(((.............)))...))	chr1:31212599-31212868(-)$1	1	70	96	21.7174
(.((((............)))).)).	chr5:131531004-131531270(-)$1	1	1	27	21.0925
((.(((.............))).)))	chr1:173454413-173454633(+)$1	1	83	109	22.3800
..(((((...........).))))))	chr12:50146706-50146958(+)$1	1	92	118	21.9920
..(((((............)))))..	chr19:45422329-45422532(+)$1	1	30	56	19.1630
((((................)))))(	chrX:55047447-55047689(-)$1	1	78	104	22.3725
.((((((............)))))).	chr9:5824990-5825221(-)$1	1	93	119	23.0927
.(((((............)))))...	chr2:85779993-85780284(-)$1	1	139	165	23.0228
(((((((...........))))))).	chr2:158167654-158167913(+)$1	1	225	251	22.3757
((((.((.............))))))	chr8:126017764-126018036(+)$1	1	90	116	21.2640
.((((((............)))))).	chr11:62393706-62393911(-)$1	1	20	46	22.8927
...((((...........))))))))	chr1:196658554-196658844(+)$1	1	184	210	20.1170
((((................))))).	chr3:128356632-128356882(-)$1	1	79	105	21.6288
((((.((...........))))))))	chr15:44045971-44046200(+)$1	1	199	225	22.4655
((((................))))))	chr11:77817815-77818079(-)$1	1	204	230	22.5061
((((((..............))))))	chr12:74932022-74932274(+)$1	1	187	213	22.0287
(((((...............))))).	chr12:58114465-58114701(+)$1	1	79	105	18.7145
...(((............))))))))	chr19:13051566-13051778(+)$1	1	90	116	22.2266
(....((...........))..))))	chr5:10394784-10394995(+)$1	1	51	77	20.1658
(((((...............))))))	chr9:102780461-102780696(-)$1	1	16	42	18.6216
((.((((...........))))))).	chr2:172821843-172822139(+)$1	1	261	287	21.9915
(((((...............))))))	chrX:118370512-118370755(+)$1	1	161	187	19.2554
(...(((............)))....	chr12:50152365-50152576(+)$1	1	29	55	21.6888
.(((((............)))))...	chr1:54507363-54507579(-)$1	1	113	139	22.4582
.((((..............)))))).	chr5:179149912-179150120(+)$1	1	125	151	21.5505
.((((((............)))))))	chr12:104335367-104335577(+)$1	1	91	117	22.7336
((((..............))))).((	chr2:65325057-65325289(-)$1	1	13	39	19.6664
(((((((...........))))((((	chr10:76980400-76980636(+)$1	1	11	37	20.8949
(..((((...........))))..))	chr8:126015480-126015771(+)$1	1	7	33	21.5060
((((((..............))))))	chr13:113964993-113965284(+)$1	1	8	34	20.1546
((((((..............))))))	chr8:98831355-98831566(+)$1	1	127	153	22.0287
.((.(((.............))))).	chrX:47001991-47002244(-)$1	1	64	90	21.4296
.((((((...........))))))..	chr1:179316647-179316934(+)$1	1	221	247	21.9356
)(((.((............)).))).	chr11:57182305-57182573(-)$1	1	96	122	21.8151
(((((...............))))))	chrX:119581596-119581869(-)$1	1	20	46	19.2554
.(((................)))..)	chr1:19549817-19550085(-)$1	1	22	48	22.4013
(((..((.............)).)))	chr12:25031363-25031618(-)$1	1	12	38	21.3607
(((((((...........))))))))	chr17:26890731-26891016(-)$1	1	46	72	21.8285
..(((((...........))))))))	chr2:63833894-63834228(+)$1	1	191	217	22.3013
((((.((...........))))))))	chr19:45375046-45375325(+)$1	1	30	56	21.9203
(((((((............)))))))	chr11:62652008-62652244(+)$1	1	43	69	23.3728
(((((((............)))))))	chr2:55200899-55201103(-)$1	1	73	99	20.4003
.((((..............)))).((	chr1:167515277-167515523(-)$1	1	162	188	19.5429
((((................))))))	chr10:7840904-7841149(+)$1	1	143	169	22.5061
((((((.............)))))))	chr19:10394291-10394538(+)$1	1	62	88	22.6142
((.(((............))))))))	chr10:102116201-102116413(+)$1	1	177	203	23.2976
((((.((..............))..)	chr8:11687685-11688000(+)$1	1	135	161	20.5708
(.(.(((............)))).))	chr6:109690109-109690321(-)$1	1	33	59	23.4673
..((((............))))....	chr1:198687163-198687487(+)$1	1	271	297	22.5614
((((.((................)).	chr6:122773065-122773301(-)$1	1	138	164	19.8071
(((((...............))))))	chr11:43859764-43860037(+)$1	1	60	86	19.2554
(..((((............))))...	chr3:53919750-53920005(-)$1	1	74	100	22.3417
(((((..............))))).(	chr14:68151805-68152022(-)$1	1	43	69	20.1121

#PSSM
e : 0.15	g : 0.13	f : 0.13	! : 0.10	d : 0.08	" : 0.05	[ : 0.05	c : 0.05	i : 0.05	: : 0.03	h : 0.03	b : 0.01	' : 0.01	# : 0.01	= : 0.01	$ : 0.01	F : 0.01	
f : 0.18	e : 0.17	g : 0.13	! : 0.10	d : 0.06	c : 0.06	i : 0.05	" : 0.03	[ : 0.03	# : 0.03	h : 0.03	: : 0.01	' : 0.01	F : 0.01	b : 0.01	
f : 0.18	e : 0.18	g : 0.13	d : 0.10	c : 0.08	! : 0.05	[ : 0.05	# : 0.03	h : 0.03	i : 0.03	' : 0.01	" : 0.01	F : 0.01	b : 0.01	a : 0.01	
d : 0.20	f : 0.18	e : 0.17	g : 0.13	c : 0.12	[ : 0.05	h : 0.03	i : 0.03	# : 0.01	" : 0.01	! : 0.01	
d : 0.18	c : 0.15	f : 0.13	g : 0.12	e : 0.10	[ : 0.10	y : 0.08	h : 0.03	# : 0.01	w : 0.01	! : 0.01	i : 0.01	
d : 0.15	b : 0.13	f : 0.12	c : 0.12	y : 0.08	x : 0.08	g : 0.06	e : 0.06	w : 0.06	h : 0.03	[ : 0.01	v : 0.01	i : 0.01	
b : 0.13	w : 0.12	d : 0.10	u : 0.10	f : 0.08	y : 0.08	x : 0.08	c : 0.06	g : 0.05	v : 0.05	a : 0.03	e : 0.03	i : 0.01	h : 0.01	
u : 0.29	t : 0.27	w : 0.13	v : 0.10	y : 0.10	x : 0.08	
u : 0.29	t : 0.27	w : 0.13	v : 0.10	y : 0.10	x : 0.08	
u : 0.29	t : 0.27	w : 0.13	v : 0.10	y : 0.10	x : 0.08	
u : 0.29	t : 0.27	w : 0.13	v : 0.10	y : 0.10	x : 0.08	
u : 0.29	t : 0.27	w : 0.13	v : 0.10	y : 0.10	x : 0.08	
u : 0.29	t : 0.27	w : 0.13	v : 0.10	y : 0.10	x : 0.08	
u : 0.29	t : 0.27	w : 0.13	v : 0.10	y : 0.10	x : 0.08	
u : 0.29	t : 0.27	w : 0.13	v : 0.10	y : 0.10	x : 0.08	
u : 0.29	t : 0.27	w : 0.13	v : 0.10	y : 0.10	x : 0.08	
u : 0.29	t : 0.27	w : 0.13	v : 0.10	y : 0.10	x : 0.08	
u : 0.29	t : 0.27	w : 0.13	v : 0.10	y : 0.10	x : 0.08	
u : 0.18	d : 0.12	w : 0.12	y : 0.10	v : 0.08	x : 0.08	c : 0.06	e : 0.06	b : 0.05	g : 0.03	a : 0.03	f : 0.01	i : 0.01	
d : 0.17	c : 0.12	e : 0.10	y : 0.10	f : 0.08	x : 0.08	g : 0.06	b : 0.06	w : 0.06	v : 0.05	] : 0.03	i : 0.01	h : 0.01	
f : 0.18	d : 0.18	c : 0.17	e : 0.15	g : 0.13	b : 0.05	h : 0.03	2 : 0.01	i : 0.01	w : 0.01	y : 0.01	
f : 0.18	d : 0.18	e : 0.15	g : 0.13	c : 0.10	b : 0.05	h : 0.05	] : 0.03	i : 0.03	3 : 0.01	2 : 0.01	y : 0.01	
f : 0.22	e : 0.18	g : 0.15	c : 0.08	d : 0.08	] : 0.05	h : 0.05	i : 0.03	3 : 0.01	8 : 0.01	2 : 0.01	b : 0.01	a : 0.01	4 : 0.01	y : 0.01	
f : 0.22	g : 0.15	e : 0.13	b : 0.06	c : 0.06	h : 0.05	2 : 0.05	] : 0.03	3 : 0.03	d : 0.03	4 : 0.03	: : 0.03	i : 0.03	8 : 0.01	> : 0.01	
f : 0.22	g : 0.15	e : 0.13	b : 0.10	c : 0.08	h : 0.05	d : 0.03	: : 0.03	3 : 0.03	4 : 0.03	2 : 0.03	i : 0.03	8 : 0.01	> : 0.01	
f : 0.15	g : 0.12	e : 0.10	] : 0.08	d : 0.06	: : 0.06	c : 0.06	3 : 0.05	h : 0.05	4 : 0.05	i : 0.05	b : 0.03	2 : 0.03	8 : 0.01	> : 0.01	E : 0.01	

#score	1249.2653618261863
#seq	58
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_UTR_m3_run2.txt

#BEAR
eeeeerrrrrrrrreee	chr6:31797759-31798002(+)$1	243	104	121	7.0821
gggbboooooobb]ggg	chr4:77968273-77968497(-)$1	224	113	130	8.8710
eeeeeooooooeeeeeC	chr17:34945844-34946209(+)$1	365	255	272	10.6484
bddddoooooodddd22	chr7:30407083-30407363(+)$1	280	58	75	8.8708
eeeeerrrrrrrrreee	chr15:32930173-32930453(+)$1	280	119	136	7.0821
eeeeeooooooeeeee8	chr3:57557439-57557743(-)$1	304	12	29	11.2356
eeeeeooooooeeeee:	chr18:20877298-20877580(-)$1	282	174	191	10.8624
eeeeerrrrrrrrreee	chr17:55757046-55757305(+)$1	259	174	191	7.0821
eeeeennnnneeeeedd	chr20:61576790-61577044(+)$1	254	217	234	7.0866
[eeeeennnnneeeee]	chr16:66766100-66766323(-)$1	223	172	189	7.6393
fffffooooooffffff	chr6:28123604-28123837(+)$1	233	189	206	9.6353
fffffooooooffffff	chr1:182352017-182352285(-)$1	268	27	44	9.6353
eeeeennnnneeeeeee	chrX:122735870-122736124(-)$1	254	164	181	7.5392
eddddoooooodddd]e	chr1:160968260-160968518(-)$1	258	216	233	9.7225
eeeee[allla]eeeee	chr17:39847727-39847987(+)$1	260	236	253	7.6787
fffffooooooffffff	chr19:16187714-16188010(+)$1	296	20	37	9.6353
eeeeerrrrrrrrreee	chr3:183354260-183354498(+)$1	238	146	163	7.0821
$ddddoooooodddd]h	chr14:69926762-69927021(+)$1	259	162	179	8.9558
ee[bboooooobbeeee	chr9:115928078-115928331(-)$1	253	159	176	9.8194
eeeeeooooooeeeee:	chr1:32373806-32374072(-)$1	266	19	36	10.8624
""cccoooooocccggg	chr1:110135548-110135790(+)$1	242	60	77	9.2224
fffffooooooffffff	chr17:74730989-74731208(-)$1	219	108	125	9.6353
eeeeeooooooeeeeeC	chr10:71910148-71910416(-)$1	268	174	191	10.6484
[ddddoooooodddd22	chr4:109588696-109588951(+)$1	255	131	148	9.3272
eeeeeooooooeeeee]	chr9:5786028-5786317(-)$1	289	253	270	11.6699
eeeeeooooooeeeee4	chr1:25687048-25687322(+)$1	274	248	265	11.5742
fffffooooooffffff	chr2:176042834-176043079(-)$1	245	101	118	9.6353
=====oooooo======	chr2:87002379-87002683(+)$1	304	162	179	9.7799
eeeeeennnnneeeee2	chr19:48885857-48886070(-)$1	213	176	193	7.5627
[ddddoooooodddd]b	chr11:14541741-14541975(-)$1	234	120	137	9.4774
fffffooooooffffff	chr8:48890241-48890469(+)$1	228	100	117	9.6353
cddddoooooodddd22	chr13:99105019-99105265(-)$1	246	35	52	9.1289
fddddoooooodddd]f	chr3:52723120-52723414(+)$1	294	165	182	9.5434
[eeeeennnnneeeee2	chr12:67707576-67707816(+)$1	240	153	170	7.4834
ee[bboooooobb]eee	chr12:62729189-62729460(+)$1	271	235	252	9.6464
iiiiiooooooiiiiii	chr1:203839012-203839240(+)$1	228	115	132	9.4390
eeeeeooooooeeeee:	chr11:64532647-64532881(-)$1	234	66	83	10.8624
eeeeeooooooeeeee:	chr17:25635617-25635838(+)$1	221	125	142	10.8624
fffbboooooobb]fff	chr5:140085625-140085943(+)$1	318	256	273	8.7791
&ddddoooooodddd==	chr16:56643229-56643483(+)$1	254	76	93	8.7802
gggggoooooogggggg	chr1:224577125-224577337(-)$1	212	119	136	9.6952
ff[bboooooobb]fff	chr1:32662235-32662496(+)$1	261	22	39	8.7898
d[cccooooooccc]dd	chr6:26027024-26027256(-)$1	232	194	211	8.9538
ee[bboooooobb]eee	chr1:156278660-156278911(-)$1	251	65	82	9.6464
gggggoooooogggggg	chr1:52552496-52552739(+)$1	243	62	79	9.6952
##cccooooooccceee	chr2:44115561-44115815(-)$1	254	56	73	9.5751
eeeeeooooooeeeee:	chr5:74669523-74669767(-)$1	244	227	244	10.8624
fffffooooooffffff	chr6:33269188-33269425(-)$1	237	45	62	9.6353
eeeeeooooooeeeee4	chr7:44869435-44869688(-)$1	253	219	236	11.5742
fff[aooooooa]ffff	chr4:122737813-122738092(-)$1	279	196	213	9.3521
eeeeennnnneeeeedd	chr11:102268532-102268804(-)$1	272	225	242	7.0866
[ddddoooooodddd]b	chr6:43304463-43304736(-)$1	273	255	272	9.4774
iiiiiooooooiiiiii	chr1:7839736-7840030(+)$1	294	104	121	9.4390
g[cccooooooccc]gg	chr1:22005427-22005703(-)$1	276	83	100	9.4214
eeeeeooooooeeeee:	chr12:54632020-54632266(-)$1	246	179	196	10.8624
fffffooooooffffff	chr10:70931630-70931896(+)$1	266	106	123	9.6353
eeeeeooooooeeeee:	chr22:38879486-38879728(-)$1	242	1	18	10.8624
eeeeerrrrrrrrreee	chr1:115259741-115259955(-)$1	214	152	169	7.0821
eeeeeooooooeeeee:	chr14:53106694-53106938(-)$1	244	179	196	10.8624
gggggoooooogggggg	chr1:226170750-226170981(-)$1	231	112	129	9.6952
[eeeeennnnneeeee2	chr7:44618878-44619141(-)$1	263	202	219	7.4834

#otherMatches

#Seq PSSM
AAGGGUGUUUCGUUCCC	chr6:31797759-31798002(+)$1	243	104	121	7.0821
AGUCUGAAAAAGGUAUU	chr4:77968273-77968497(-)$1	224	113	130	8.8710
ACUAAAGCAACUUAGUG	chr17:34945844-34946209(+)$1	365	255	272	10.6484
CUGUUUUAUUUAACGCU	chr7:30407083-30407363(+)$1	280	58	75	8.8708
UUAGACUUUACCUUucu	chr15:32930173-32930453(+)$1	280	119	136	7.0821
AAAAGUAUCCUCUUUUA	chr3:57557439-57557743(-)$1	304	12	29	11.2356
aggaucaagccauccuc	chr18:20877298-20877580(-)$1	282	174	191	10.8624
UGACUUAGUCCAGUAGU	chr17:55757046-55757305(+)$1	259	174	191	7.0821
AGAUGUUAAUCAUCUCA	chr20:61576790-61577044(+)$1	254	217	234	7.0866
UCUGUGUCUUCUACAGC	chr16:66766100-66766323(-)$1	223	172	189	7.6393
UCUGGUUGUAUCUAGAU	chr6:28123604-28123837(+)$1	233	189	206	9.6353
AAGAAUUAUUUUUUUUC	chr1:182352017-182352285(-)$1	268	27	44	9.6353
AAUGCAUUAAGCAUUAG	chrX:122735870-122736124(-)$1	254	164	181	7.5392
GAUCUUUGAAUAGGUAU	chr1:160968260-160968518(-)$1	258	216	233	9.7225
GUGGAGGAUUCGUCCAC	chr17:39847727-39847987(+)$1	260	236	253	7.6787
GUCGGGCGGGGCCGGCC	chr19:16187714-16188010(+)$1	296	20	37	9.6353
GCGGGGAUUGGGCGCCU	chr3:183354260-183354498(+)$1	238	146	163	7.0821
ACGUUUUCUAUGACGCA	chr14:69926762-69927021(+)$1	259	162	179	8.9558
GAUCAUAACCCUGUCUU	chr9:115928078-115928331(-)$1	253	159	176	9.8194
CAUAGAUCUCCCUGUGG	chr1:32373806-32374072(-)$1	266	19	36	10.8624
GUUCUGCAAUAAGAUUC	chr1:110135548-110135790(+)$1	242	60	77	9.2224
UUGCCUCAGUUGGCAAA	chr17:74730989-74731208(-)$1	219	108	125	9.6353
AGUGGUUUAUUCCACUG	chr10:71910148-71910416(-)$1	268	174	191	10.6484
GAACUCUGGACAGUUGA	chr4:109588696-109588951(+)$1	255	131	148	9.3272
CUUAUACUGGAAUGAGA	chr9:5786028-5786317(-)$1	289	253	270	11.6699
CUGAGUGUAGUCUCAGC	chr1:25687048-25687322(+)$1	274	248	265	11.5742
ACGGAUGUAAUUCUGUG	chr2:176042834-176043079(-)$1	245	101	118	9.6353
GGCUUCCUGUAAGGUUU	chr2:87002379-87002683(+)$1	304	162	179	9.7799
UGUUUUUGUACAGAACU	chr19:48885857-48886070(-)$1	213	176	193	7.5627
CGCCGCCACCAUGGUAC	chr11:14541741-14541975(-)$1	234	120	137	9.4774
AGAGGUAUGAUUCUUUC	chr8:48890241-48890469(+)$1	228	100	117	9.6353
GGGAGGGUCAGCUCCUU	chr13:99105019-99105265(-)$1	246	35	52	9.1289
UAGUCACUGAAGACUGA	chr3:52723120-52723414(+)$1	294	165	182	9.5434
UAAGUGUUCACUACUUU	chr12:67707576-67707816(+)$1	240	153	170	7.4834
AAUAUAAACACAUCUUC	chr12:62729189-62729460(+)$1	271	235	252	9.6464
GUGAACAUUUAUUCAUA	chr1:203839012-203839240(+)$1	228	115	132	9.4390
AAAUUUUUAUUAAUUUU	chr11:64532647-64532881(-)$1	234	66	83	10.8624
UCUGGUAGUUUCUGGAA	chr17:25635617-25635838(+)$1	221	125	142	10.8624
GUGCAUGAAUCUGUCAU	chr5:140085625-140085943(+)$1	318	256	273	8.7791
UUCCACAAACCUGGAUU	chr16:56643229-56643483(+)$1	254	76	93	8.7802
CAGGAUACCAUUCUUGU	chr1:224577125-224577337(-)$1	212	119	136	9.6952
GGACAACAGAAUGACUC	chr1:32662235-32662496(+)$1	261	22	39	8.7898
UCGGCUAUUCUGCCUAG	chr6:26027024-26027256(-)$1	232	194	211	8.9538
GUUUUCCAAAAGACACU	chr1:156278660-156278911(-)$1	251	65	82	9.6464
uGCUGUUUGUUCAGCAU	chr1:52552496-52552739(+)$1	243	62	79	9.6952
UUGAGGGAAAACUCUUC	chr2:44115561-44115815(-)$1	254	56	73	9.5751
UACAGUCAAAUCUGUGU	chr5:74669523-74669767(-)$1	244	227	244	10.8624
AGGGAUAAuuuuucuuu	chr6:33269188-33269425(-)$1	237	45	62	9.6353
ACUGUGUUGCUGCAGUG	chr7:44869435-44869688(-)$1	253	219	236	11.5742
AGAGUAUGUUAAGUUUU	chr4:122737813-122738092(-)$1	279	196	213	9.3521
AUAGCGUAAUGCUGUGU	chr11:102268532-102268804(-)$1	272	225	242	7.0866
ACCCAAUUUCCUGGGCA	chr6:43304463-43304736(-)$1	273	255	272	9.4774
AAACGUGCCUUUGUUUU	chr1:7839736-7840030(+)$1	294	104	121	9.4390
CAUGUUUACAUAUGAGA	chr1:22005427-22005703(-)$1	276	83	100	9.4214
CAUCCUUCCGUGGAUGA	chr12:54632020-54632266(-)$1	246	179	196	10.8624
GCUAUAUUCCAGUAGUA	chr10:70931630-70931896(+)$1	266	106	123	9.6353
AAGCAAUGGGCUGCUUC	chr22:38879486-38879728(-)$1	242	1	18	10.8624
GGGUCUGAUUUCUUGGC	chr1:115259741-115259955(-)$1	214	152	169	7.0821
CUUUAUUAUAUUAGAGG	chr14:53106694-53106938(-)$1	244	179	196	10.8624
uaaaguaguuucuuuaa	chr1:226170750-226170981(-)$1	231	112	129	9.6952
AUCAGCCACUUGCUGAC	chr7:44618878-44619141(-)$1	263	202	219	7.4834

#DB
(((((.........)))	chr6:31797759-31798002(+)$1	1	104	121	7.0821
(((((......)).)))	chr4:77968273-77968497(-)$1	1	113	130	8.8710
(((((......))))))	chr17:34945844-34946209(+)$1	1	255	272	10.6484
(((((......))))..	chr7:30407083-30407363(+)$1	1	58	75	8.8708
(((((.........)))	chr15:32930173-32930453(+)$1	1	119	136	7.0821
(((((......))))).	chr3:57557439-57557743(-)$1	1	12	29	11.2356
(((((......))))).	chr18:20877298-20877580(-)$1	1	174	191	10.8624
(((((.........)))	chr17:55757046-55757305(+)$1	1	174	191	7.0821
(((((.....)))))((	chr20:61576790-61577044(+)$1	1	217	234	7.0866
.(((((.....))))).	chr16:66766100-66766323(-)$1	1	172	189	7.6393
(((((......))))))	chr6:28123604-28123837(+)$1	1	189	206	9.6353
(((((......))))))	chr1:182352017-182352285(-)$1	1	27	44	9.6353
(((((.....)))))))	chrX:122735870-122736124(-)$1	1	164	181	7.5392
(((((......)))).)	chr1:160968260-160968518(-)$1	1	216	233	9.7225
(((((.(...).)))))	chr17:39847727-39847987(+)$1	1	236	253	7.6787
(((((......))))))	chr19:16187714-16188010(+)$1	1	20	37	9.6353
(((((.........)))	chr3:183354260-183354498(+)$1	1	146	163	7.0821
.((((......)))).)	chr14:69926762-69927021(+)$1	1	162	179	8.9558
((.((......))))))	chr9:115928078-115928331(-)$1	1	159	176	9.8194
(((((......))))).	chr1:32373806-32374072(-)$1	1	19	36	10.8624
..(((......))))))	chr1:110135548-110135790(+)$1	1	60	77	9.2224
(((((......))))))	chr17:74730989-74731208(-)$1	1	108	125	9.6353
(((((......))))))	chr10:71910148-71910416(-)$1	1	174	191	10.6484
.((((......))))..	chr4:109588696-109588951(+)$1	1	131	148	9.3272
(((((......))))).	chr9:5786028-5786317(-)$1	1	253	270	11.6699
(((((......))))).	chr1:25687048-25687322(+)$1	1	248	265	11.5742
(((((......))))))	chr2:176042834-176043079(-)$1	1	101	118	9.6353
(((((......))))))	chr2:87002379-87002683(+)$1	1	162	179	9.7799
((((((.....))))).	chr19:48885857-48886070(-)$1	1	176	193	7.5627
.((((......)))).)	chr11:14541741-14541975(-)$1	1	120	137	9.4774
(((((......))))))	chr8:48890241-48890469(+)$1	1	100	117	9.6353
(((((......))))..	chr13:99105019-99105265(-)$1	1	35	52	9.1289
(((((......)))).)	chr3:52723120-52723414(+)$1	1	165	182	9.5434
.(((((.....))))).	chr12:67707576-67707816(+)$1	1	153	170	7.4834
((.((......)).)))	chr12:62729189-62729460(+)$1	1	235	252	9.6464
(((((......))))))	chr1:203839012-203839240(+)$1	1	115	132	9.4390
(((((......))))).	chr11:64532647-64532881(-)$1	1	66	83	10.8624
(((((......))))).	chr17:25635617-25635838(+)$1	1	125	142	10.8624
(((((......)).)))	chr5:140085625-140085943(+)$1	1	256	273	8.7791
.((((......))))))	chr16:56643229-56643483(+)$1	1	76	93	8.7802
(((((......))))))	chr1:224577125-224577337(-)$1	1	119	136	9.6952
((.((......)).)))	chr1:32662235-32662496(+)$1	1	22	39	8.7898
(.(((......))).))	chr6:26027024-26027256(-)$1	1	194	211	8.9538
((.((......)).)))	chr1:156278660-156278911(-)$1	1	65	82	9.6464
(((((......))))))	chr1:52552496-52552739(+)$1	1	62	79	9.6952
..(((......))))))	chr2:44115561-44115815(-)$1	1	56	73	9.5751
(((((......))))).	chr5:74669523-74669767(-)$1	1	227	244	10.8624
(((((......))))))	chr6:33269188-33269425(-)$1	1	45	62	9.6353
(((((......))))).	chr7:44869435-44869688(-)$1	1	219	236	11.5742
(((.(......).))))	chr4:122737813-122738092(-)$1	1	196	213	9.3521
(((((.....)))))))	chr11:102268532-102268804(-)$1	1	225	242	7.0866
.((((......)))).)	chr6:43304463-43304736(-)$1	1	255	272	9.4774
(((((......))))))	chr1:7839736-7840030(+)$1	1	104	121	9.4390
(.(((......))).))	chr1:22005427-22005703(-)$1	1	83	100	9.4214
(((((......))))).	chr12:54632020-54632266(-)$1	1	179	196	10.8624
(((((......))))))	chr10:70931630-70931896(+)$1	1	106	123	9.6353
(((((......))))).	chr22:38879486-38879728(-)$1	1	1	18	10.8624
(((((.........)))	chr1:115259741-115259955(-)$1	1	152	169	7.0821
(((((......))))).	chr14:53106694-53106938(-)$1	1	179	196	10.8624
(((((......))))))	chr1:226170750-226170981(-)$1	1	112	129	9.6952
.(((((.....))))).	chr7:44618878-44619141(-)$1	1	202	219	7.4834

#PSSM
e : 0.45	f : 0.19	[ : 0.09	g : 0.08	i : 0.03	b : 0.01	$ : 0.01	" : 0.01	= : 0.01	c : 0.01	& : 0.01	d : 0.01	# : 0.01	
e : 0.49	f : 0.18	d : 0.14	g : 0.06	i : 0.03	[ : 0.03	" : 0.01	= : 0.01	# : 0.01	
e : 0.44	f : 0.16	d : 0.14	g : 0.06	[ : 0.06	c : 0.06	i : 0.03	= : 0.01	
e : 0.44	d : 0.14	f : 0.13	b : 0.09	c : 0.06	g : 0.04	i : 0.03	= : 0.01	[ : 0.01	
e : 0.44	d : 0.14	f : 0.13	b : 0.09	c : 0.06	g : 0.04	i : 0.03	= : 0.01	a : 0.01	
o : 0.78	r : 0.08	e : 0.06	n : 0.04	[ : 0.01	
o : 0.78	n : 0.11	r : 0.08	a : 0.01	
o : 0.78	n : 0.11	r : 0.08	l : 0.01	
o : 0.78	n : 0.11	r : 0.08	l : 0.01	
o : 0.78	n : 0.11	r : 0.08	l : 0.01	
o : 0.78	r : 0.08	n : 0.06	e : 0.04	a : 0.01	
e : 0.34	d : 0.14	f : 0.13	b : 0.09	r : 0.08	c : 0.06	g : 0.04	i : 0.03	] : 0.01	= : 0.01	a : 0.01	
e : 0.36	d : 0.14	f : 0.13	b : 0.09	r : 0.08	c : 0.06	g : 0.04	i : 0.03	= : 0.01	] : 0.01	
e : 0.37	d : 0.14	f : 0.14	r : 0.08	] : 0.08	c : 0.06	g : 0.04	i : 0.03	= : 0.01	
e : 0.50	f : 0.18	d : 0.14	g : 0.08	i : 0.03	] : 0.03	= : 0.01	
e : 0.47	f : 0.18	g : 0.09	] : 0.08	2 : 0.04	d : 0.04	= : 0.03	i : 0.03	
e : 0.19	f : 0.19	: : 0.13	g : 0.09	2 : 0.09	d : 0.04	C : 0.03	] : 0.03	4 : 0.03	= : 0.03	b : 0.03	i : 0.03	8 : 0.01	h : 0.01	

#score	569.4091169329793
#seq	61
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_CDS_m2_run2.txt

#BEAR
eee!!ccc!!bbmmmmbb22ccc333eee	chr3:33438218-33438479(-)$1	261	128	157	10.4682
hhhhhhh[ddddmmmmdddd]hhhhhhhh	chr10:69832720-69832985(-)$1	265	68	97	9.3874
dd[dddd[ddddmmmmdddd]dddd]ddd	chr1:1326801-1327041(-)$1	240	11	40	9.7623
[==========nnnnn==========]cc	chr6:168313955-168314239(+)$1	284	110	139	9.6743
fff[ccc[ddddmmmmddddccc]fffff	chr12:112525214-112525613(-)$1	399	78	107	10.8779
""ggggggg!!ammmma22ggggggg444	chr1:78413064-78413335(-)$1	271	162	191	11.1528
"""ccc[eeeeemmmmeeeee22ccc]gg	chr3:171851284-171851547(+)$1	263	227	256	9.7417
gggggg!!ccc"""===========gggg	chr11:14535769-14536078(-)$1	309	166	195	8.5819
ccca[gggggggmmmmggggggg]a]ccc	chr13:20593657-20593960(+)$1	303	39	68	11.3738
!!ccc[bbddddmmmmdddd]bb333ccc	chr4:140640574-140640855(+)$1	281	213	242	11.1080
hhhhhh!!ddddmmmmdddd4444hhhhh	chr6:91254237-91254529(-)$1	292	92	121	10.2759
eeeee"""bb[aooooooa]bb4444eee	chr17:25634688-25634946(+)$1	258	88	117	8.3676
dd[dddd[ddddmmmmdddd22dddd]dd	chr14:50298512-50298878(-)$1	366	152	181	9.5825
=========[bbmmmmbb]==========	chr11:637262-637572(+)$1	310	152	181	11.2816
d[ccc"""ddddmmmmdddd333cccddd	chr19:30461923-30462205(+)$1	282	243	272	11.8694
""eeeee!!cccmmmmccc]eeeee4444	chr2:136407339-136407599(+)$1	260	99	128	10.8373
""ccc####cccmmmmccc>>>>>>>>>>	chr5:115238576-115238984(+)$1	408	288	317	10.3327
dffffff[ddddmmmmdddd]ffffffee	chr2:160253480-160253821(-)$1	341	140	169	10.0499
eeeee"""bb[aooooooa]bb4444eee	chr17:25634665-25634888(+)$1	223	111	140	8.3676
ffccca[a[cccmmmmccc]a]a]ccc55	chr7:157023912-157024251(+)$1	339	243	272	10.5250
hhhhhhh[ddddmmmmdddd]hhhhhhhh	chr17:62518668-62518929(+)$1	261	68	97	9.3874
ggggg"""cccnnnnnccc4444gggggg	chr14:58734041-58734338(-)$1	297	160	189	9.9807
ggg"""ffffffmmmmffffffggggggg	chrX:122757334-122757630(-)$1	296	159	188	9.7536
:ccc!!ccccccmmmmccc]ccc22ccc:	chr7:148514170-148514435(-)$1	265	160	189	10.0427
hhhhhhh"""bbmmmmbb333hhhhhhhh	chr3:180688753-180689047(+)$1	294	131	160	8.9445
!dddd####cccmmmmccc333dddd22a	chr3:179092840-179093117(+)$1	277	140	169	11.3472
[ccc[a[bb[bbmmmmbb]bb]a]ccc]c	chr6:157099943-157100204(+)$1	261	33	62	9.7539
fff!!ccc[cccnnnnnccccccffffff	chr16:24803033-24803346(+)$1	313	196	225	8.2367
cc!!gggggggbblllbb]ggggggg22c	chr9:102888684-102889017(+)$1	333	64	93	8.4311
ffff[gggggggmmmmgggggggffffff	chr21:40670111-40670449(-)$1	338	304	333	10.3570
eee!!ggggggglllggggggg333eeee	chr17:65358885-65359192(-)$1	307	228	257	9.3243
##ggggggg!!ammmma22gggggggddd	chr1:78413135-78413367(-)$1	232	194	223	10.8267
ee####ffffffmmmmffffff22eeeee	chr4:68376610-68376964(-)$1	354	164	193	8.4846
ffffff!!ddddllldddd]ffffffccc	chr22:44340375-44340686(+)$1	311	242	271	8.8236
hhhhhh"""cccmmmmccc333hhhhhhh	chr2:159389847-159390115(+)$1	268	77	106	10.8530
[ffffff!!cccmmmmccc]ffffff]bb	chr9:111681066-111681331(-)$1	265	167	196	10.6613
[cccbb!!ddddmmmmdddd22bb]ccc]	chr1:89271300-89271570(+)$1	270	11	40	10.6247
dddd[ccc[cccmmmmccc]ccc22dddd	chr20:47589559-47589846(+)$1	287	14	43	10.9436
ddddccc[cccnnnnnccc]cccgggggg	chr18:12986735-12986996(+)$1	261	134	163	8.9726
ggggggg[ddddmmmmdddd]ggggggg:	chr6:76344604-76344918(+)$1	314	234	263	11.1122
ccc[dddd[ccclllccc22dddd]ccc4	chr9:19379202-19379475(-)$1	273	14	43	8.3271
c####gggggggmmmmggggggg4444cc	chr8:99718502-99718815(-)$1	313	20	49	10.9012
$dddd"""ddddmmmmdddd]ddddffff	chr1:1326841-1327062(-)$1	221	95	124	10.3596
fffff!!eeeeemmmmeeeee]ffffff3	chr2:109102760-109103006(+)$1	246	23	52	9.1696
"dddd[ccc!!ammmma22ccc]ddddcc	chr12:11174412-11174679(-)$1	267	83	112	9.8187
dddd[gggggggooooooggggggg]ddd	chr4:187513768-187514021(-)$1	253	135	164	8.7149
ffff!!a[ddddmmmmdddd]a4444fff	chr12:54676758-54676992(+)$1	234	55	84	11.3854
""==========mmmm==========333	chr11:28143523-28143798(+)$1	275	82	111	12.2422
gggg[ccc[aooooooaccc]ggggggg:	chr15:62160025-62160316(-)$1	291	255	284	8.9572
e!!ccc"""cccmmmmccc22ccc4444e	chr2:15747093-15747442(+)$1	349	247	276	12.1749
gggggggg[cccmmmmccc]gggggggee	chr2:166781029-166781307(-)$1	278	40	69	12.3098
f[bb!!bb[cccmmmmccc]bb4444bb]	chr14:75290772-75291076(+)$1	304	52	81	10.1535
"dddd####ccclllcccdddd]gggggg	chr10:75984192-75984531(+)$1	339	161	190	9.7750

#otherMatches

#Seq PSSM
CAGGCACUGAUGAGGGCAGAGGUAGACUG	chr3:33438218-33438479(-)$1	261	128	157	10.4682
GUUUCAGAAGAGAAUUUUUUAUUGAAACU	chr10:69832720-69832985(-)$1	265	68	97	9.3874
UAUUAUGUUGCUUCUCAGUAUCAUGUUGC	chr1:1326801-1327041(-)$1	240	11	40	9.7623
CGUCUGUUUUUCUCCAGGAAGUAGACCAG	chr6:168313955-168314239(+)$1	284	110	139	9.6743
CCUCUUCAUGGCCUAUGCCAGAGUGGGUG	chr12:112525214-112525613(-)$1	399	78	107	10.8779
CAUCCUUGAUUGUGUUCCUUCAAGGAGCA	chr1:78413064-78413335(-)$1	271	162	191	11.1528
AGGACAUUUUUAGUGGUAAAAUCUGUAUU	chr3:171851284-171851547(+)$1	263	227	256	9.7417
UUGAAGGGUUUUGAUACUUGUGUUAAUUA	chr11:14535769-14536078(-)$1	309	166	195	8.5819
AUCCAAGCUUCCUGAAGGAGGUUCGAGAU	chr13:20593657-20593960(+)$1	303	39	68	11.3738
CCGGGAGCGAUGGCAUCAUCUGCCGACCC	chr4:140640574-140640855(+)$1	281	213	242	11.1080
AAAUGAGUCUAUUUUUGUAGUUAAUCAUU	chr6:91254237-91254529(-)$1	292	92	121	10.2759
CAGCAAUAUUGGUGUGAUUGAGGUUAUGC	chr17:25634688-25634946(+)$1	258	88	117	8.3676
UAUGAGCUGUUGAUAUCAACUUGCUUCUA	chr14:50298512-50298878(-)$1	366	152	181	9.5825
GCUGGUGGGGGGCGUGCUGCUCAUCGGCG	chr11:637262-637572(+)$1	310	152	181	11.2816
AAUACUGAUGGGGUAACCUACUUGUGUUC	chr19:30461923-30462205(+)$1	282	243	272	11.8694
AUUAACAUUGUUUGCCAACCUGUUAUUCU	chr2:136407339-136407599(+)$1	260	99	128	10.8373
CUCUACCCAACAGCUUUGUGUAUUCUUCU	chr5:115238576-115238984(+)$1	408	288	317	10.3327
GGGGUUAAAAAAUUGGUUUUAUGACUCUG	chr2:160253480-160253821(-)$1	341	140	169	10.0499
CAGCAAUAUUGGUGUGAUUGAGGUUAUGC	chr17:25634665-25634888(+)$1	223	111	140	8.3676
CUGCACGAAACAAAUUUGUAUGGUUGUAA	chr7:157023912-157024251(+)$1	339	243	272	10.5250
uuauauagguauguauguauguauauaAA	chr17:62518668-62518929(+)$1	261	68	97	9.3874
AAUGUAUACUGUUCAUCAGAAGAACAUUU	chr14:58734041-58734338(-)$1	297	160	189	9.9807
UCAACUUCCGGUCUAUACUGGAUGAUAGU	chrX:122757334-122757630(-)$1	296	159	188	9.7536
AACAUAGAGAUAAAACUGUACUCGUUGUC	chr7:148514170-148514435(-)$1	265	160	189	10.0427
GCGACGCAAUCGUAGCCGCAGGCGUCGCU	chr3:180688753-180689047(+)$1	294	131	160	8.9445
AUGUGUUACGGCUUGGGCCCCUCGCAGGA	chr3:179092840-179093117(+)$1	277	140	169	11.3472
gcgcgggcggcggcggcggcggcggcggc	chr6:157099943-157100204(+)$1	261	33	62	9.7539
CUGUUCUUACUGUAAUCCAGAAGCAGCUU	chr16:24803033-24803346(+)$1	313	196	225	8.2367
CAGAUGCUCUUCUGAAGGCAGGAGCAGAU	chr9:102888684-102889017(+)$1	333	64	93	8.4311
AGAUGUUAAGCUAAAAAGCUUGAAUUUAU	chr21:40670111-40670449(-)$1	338	304	333	10.3570
ggauugguacaauuauugugcccacuucg	chr17:65358885-65359192(-)$1	307	228	257	9.3243
CAUCCUUGAUUGUGUUCCUUCAAGGAGCA	chr1:78413135-78413367(-)$1	232	194	223	10.8267
UAUUGAAGUGUUAAAUAAUACUGUUACUG	chr4:68376610-68376964(-)$1	354	164	193	8.4846
AGUGGGUGACCUCACAGGUGUUCACUCGA	chr22:44340375-44340686(+)$1	311	242	271	8.8236
CGCCUUCACGUUUUCUAAUUAUAAGGUGU	chr2:159389847-159390115(+)$1	268	77	106	10.8530
GUGUGGAACCGAGAGUUUGCUUUGCAGUC	chr9:111681066-111681331(-)$1	265	167	196	10.6613
CAGUGGUUGAUGUACGCAUCCCUCAACUA	chr1:89271300-89271570(+)$1	270	11	40	10.6247
CGGAGUCUGUAGUUCACUGGGGAAAUUUG	chr20:47589559-47589846(+)$1	287	14	43	10.9436
UACCCCUCUGGAUUCCCCACGGGCUGGAU	chr18:12986735-12986996(+)$1	261	134	163	8.9726
GUAGUUUAGCUCUGAAGAGUAAAAUUACA	chr6:76344604-76344918(+)$1	314	234	263	11.1122
GGUAUUUAAGUCAGAGACGGUAAACGCCA	chr9:19379202-19379475(-)$1	273	14	43	8.3271
AAAUAGGCUAUAACUGUGUGGCCGACAUC	chr8:99718502-99718815(-)$1	313	20	49	10.9012
GUUCAUUUUAAGACCCCUUGUUGAAAUGG	chr1:1326841-1327062(-)$1	221	95	124	10.3596
GAUAACUUAGAAAAUGUUCUACUUGUCUC	chr2:109102760-109103006(+)$1	246	23	52	9.1696
UAAUAUGUUUUCUGCUGUUAAUCUGUUCU	chr12:11174412-11174679(-)$1	267	83	112	9.8187
CACCUUGUCAAUGCUGUGGUUGACACGGU	chr4:187513768-187514021(-)$1	253	135	164	8.7149
UUCAUUGUCAAAUACUUUUGUCUUAUUGA	chr12:54676758-54676992(+)$1	234	55	84	11.3854
AAGUUAUAGUUUAUUAAAACUGUAAUGUG	chr11:28143523-28143798(+)$1	275	82	111	12.2422
UGACUGUGUGUGAAUUCCAUUGUCAAUUU	chr15:62160025-62160316(-)$1	291	255	284	8.9572
CGAAAGCUCUCAUUGUUGAACCUUCCCGG	chr2:15747093-15747442(+)$1	349	247	276	12.1749
ACUAAAAUUAAUAUAUGUUUAUUUUAGGU	chr2:166781029-166781307(-)$1	278	40	69	12.3098
CCCUAAGGAUGUAUUUACAGCUAGUCAGU	chr14:75290772-75291076(+)$1	304	52	81	10.1535
GUGCAUUAAACCAUUGGUUGUAAAUAGUU	chr10:75984192-75984531(+)$1	339	161	190	9.7750

#DB
(((..(((..((....))..)))...)))	chr3:33438218-33438479(-)$1	1	128	157	10.4682
(((((((.((((....)))).))))))))	chr10:69832720-69832985(-)$1	1	68	97	9.3874
((.((((.((((....)))).)))).)))	chr1:1326801-1327041(-)$1	1	11	40	9.7623
.((((((((((.....)))))))))).))	chr6:168313955-168314239(+)$1	1	110	139	9.6743
(((.(((.((((....))))))).)))))	chr12:112525214-112525613(-)$1	1	78	107	10.8779
..(((((((..(....)..)))))))...	chr1:78413064-78413335(-)$1	1	162	191	11.1528
...(((.(((((....)))))..))).))	chr3:171851284-171851547(+)$1	1	227	256	9.7417
((((((..(((...(((((((((((((((	chr11:14535769-14536078(-)$1	1	166	195	8.5819
((((.(((((((....))))))).).)))	chr13:20593657-20593960(+)$1	1	39	68	11.3738
..(((.((((((....)))).))...)))	chr4:140640574-140640855(+)$1	1	213	242	11.1080
((((((..((((....))))....)))))	chr6:91254237-91254529(-)$1	1	92	121	10.2759
(((((...((.(......).))....)))	chr17:25634688-25634946(+)$1	1	88	117	8.3676
((.((((.((((....))))..)))).))	chr14:50298512-50298878(-)$1	1	152	181	9.5825
(((((((((.((....)).))))))))))	chr11:637262-637572(+)$1	1	152	181	11.2816
(.(((...((((....))))...))))))	chr19:30461923-30462205(+)$1	1	243	272	11.8694
..(((((..(((....))).)))))....	chr2:136407339-136407599(+)$1	1	99	128	10.8373
..(((....(((....)))..........	chr5:115238576-115238984(+)$1	1	288	317	10.3327
)((((((.((((....)))).))))))((	chr2:160253480-160253821(-)$1	1	140	169	10.0499
(((((...((.(......).))....)))	chr17:25634665-25634888(+)$1	1	111	140	8.3676
((((((.(.(((....))).).).)))..	chr7:157023912-157024251(+)$1	1	243	272	10.5250
(((((((.((((....)))).))))))))	chr17:62518668-62518929(+)$1	1	68	97	9.3874
(((((...(((.....)))....))))))	chr14:58734041-58734338(-)$1	1	160	189	9.9807
(((...((((((....)))))))))))))	chrX:122757334-122757630(-)$1	1	159	188	9.7536
.(((..((((((....))).)))..))).	chr7:148514170-148514435(-)$1	1	160	189	10.0427
(((((((...((....))...))))))))	chr3:180688753-180689047(+)$1	1	131	160	8.9445
.((((....(((....)))...))))..)	chr3:179092840-179093117(+)$1	1	140	169	11.3472
.(((.(.((.((....)).)).).))).)	chr6:157099943-157100204(+)$1	1	33	62	9.7539
(((..(((.(((.....))))))))))))	chr16:24803033-24803346(+)$1	1	196	225	8.2367
((..(((((((((...)).)))))))..)	chr9:102888684-102889017(+)$1	1	64	93	8.4311
((((.(((((((....)))))))))))))	chr21:40670111-40670449(-)$1	1	304	333	10.3570
(((..(((((((...)))))))...))))	chr17:65358885-65359192(-)$1	1	228	257	9.3243
..(((((((..(....)..))))))))))	chr1:78413135-78413367(-)$1	1	194	223	10.8267
((....((((((....))))))..)))))	chr4:68376610-68376964(-)$1	1	164	193	8.4846
((((((..((((...)))).)))))))))	chr22:44340375-44340686(+)$1	1	242	271	8.8236
((((((...(((....)))...)))))))	chr2:159389847-159390115(+)$1	1	77	106	10.8530
.((((((..(((....))).)))))).))	chr9:111681066-111681331(-)$1	1	167	196	10.6613
.(((((..((((....))))..)).))).	chr1:89271300-89271570(+)$1	1	11	40	10.6247
((((.(((.(((....))).)))..))))	chr20:47589559-47589846(+)$1	1	14	43	10.9436
))))(((.(((.....))).)))((((((	chr18:12986735-12986996(+)$1	1	134	163	8.9726
(((((((.((((....)))).))))))).	chr6:76344604-76344918(+)$1	1	234	263	11.1122
(((.((((.(((...)))..)))).))).	chr9:19379202-19379475(-)$1	1	14	43	8.3271
(....(((((((....)))))))....))	chr8:99718502-99718815(-)$1	1	20	49	10.9012
.((((...((((....)))).))))))))	chr1:1326841-1327062(-)$1	1	95	124	10.3596
(((((..(((((....))))).)))))).	chr2:109102760-109103006(+)$1	1	23	52	9.1696
.((((.(((..(....)..))).))))))	chr12:11174412-11174679(-)$1	1	83	112	9.8187
((((.(((((((......))))))).)))	chr4:187513768-187514021(-)$1	1	135	164	8.7149
((((..(.((((....)))).)....)))	chr12:54676758-54676992(+)$1	1	55	84	11.3854
..((((((((((....))))))))))...	chr11:28143523-28143798(+)$1	1	82	111	12.2422
((((.(((.(......)))).))))))).	chr15:62160025-62160316(-)$1	1	255	284	8.9572
(..(((...(((....)))..)))....)	chr2:15747093-15747442(+)$1	1	247	276	12.1749
)(((((((.(((....))).)))))))((	chr2:166781029-166781307(-)$1	1	40	69	12.3098
(.((..((.(((....))).))....)).	chr14:75290772-75291076(+)$1	1	52	81	10.1535
.((((....(((...))))))).))))))	chr10:75984192-75984531(+)$1	1	161	190	9.7750

#PSSM
f : 0.15	d : 0.13	" : 0.13	e : 0.11	g : 0.11	h : 0.09	[ : 0.07	c : 0.07	! : 0.03	= : 0.01	: : 0.01	# : 0.01	$ : 0.01	
d : 0.16	f : 0.16	g : 0.11	c : 0.11	e : 0.09	h : 0.09	" : 0.09	= : 0.03	! : 0.03	[ : 0.03	# : 0.03	
c : 0.16	f : 0.15	g : 0.15	d : 0.13	e : 0.09	h : 0.09	= : 0.05	[ : 0.03	! : 0.03	# : 0.03	" : 0.01	b : 0.01	
d : 0.16	c : 0.16	g : 0.13	f : 0.11	h : 0.09	! : 0.07	= : 0.05	e : 0.05	[ : 0.03	# : 0.03	a : 0.01	" : 0.01	b : 0.01	
c : 0.15	d : 0.13	g : 0.13	! : 0.11	[ : 0.11	h : 0.09	f : 0.07	= : 0.05	e : 0.05	# : 0.03	" : 0.01	b : 0.01	
g : 0.20	c : 0.15	" : 0.11	h : 0.09	# : 0.07	! : 0.07	d : 0.05	= : 0.05	f : 0.05	[ : 0.03	a : 0.03	e : 0.01	b : 0.01	
g : 0.18	c : 0.15	" : 0.13	! : 0.09	f : 0.07	h : 0.05	d : 0.05	= : 0.05	[ : 0.05	# : 0.05	b : 0.03	e : 0.01	a : 0.01	
[ : 0.16	g : 0.16	" : 0.15	c : 0.11	! : 0.11	= : 0.05	b : 0.05	# : 0.05	e : 0.03	f : 0.03	a : 0.01	d : 0.01	
d : 0.26	g : 0.15	[ : 0.13	c : 0.09	! : 0.05	= : 0.05	b : 0.05	# : 0.05	" : 0.05	e : 0.03	f : 0.03	
c : 0.32	d : 0.26	g : 0.11	! : 0.07	= : 0.03	e : 0.03	b : 0.03	[ : 0.03	f : 0.03	" : 0.01	a : 0.01	
c : 0.32	d : 0.26	g : 0.11	b : 0.07	! : 0.05	= : 0.03	e : 0.03	[ : 0.03	f : 0.03	o : 0.01	
d : 0.26	c : 0.26	b : 0.09	a : 0.09	g : 0.09	n : 0.05	e : 0.03	f : 0.03	" : 0.01	= : 0.01	o : 0.01	
m : 0.73	n : 0.07	o : 0.07	l : 0.07	" : 0.01	b : 0.01	
m : 0.73	l : 0.09	n : 0.07	o : 0.07	" : 0.01	
m : 0.73	l : 0.09	n : 0.07	o : 0.07	= : 0.01	
m : 0.73	n : 0.07	o : 0.07	c : 0.03	= : 0.01	l : 0.01	g : 0.01	d : 0.01	
c : 0.28	d : 0.26	b : 0.09	a : 0.07	g : 0.07	= : 0.05	o : 0.05	e : 0.03	f : 0.03	n : 0.01	
c : 0.32	d : 0.26	b : 0.09	g : 0.07	= : 0.05	2 : 0.05	o : 0.05	e : 0.03	f : 0.03	
d : 0.28	c : 0.28	2 : 0.09	g : 0.09	= : 0.05	] : 0.05	e : 0.03	a : 0.03	f : 0.03	3 : 0.01	
d : 0.26	] : 0.20	g : 0.15	= : 0.07	2 : 0.05	3 : 0.05	c : 0.05	e : 0.03	f : 0.03	> : 0.01	4 : 0.01	b : 0.01	
] : 0.16	g : 0.16	c : 0.13	= : 0.07	b : 0.07	3 : 0.07	f : 0.07	e : 0.05	2 : 0.05	4 : 0.03	d : 0.03	> : 0.01	a : 0.01	
g : 0.20	c : 0.15	f : 0.09	d : 0.07	= : 0.07	b : 0.07	h : 0.05	2 : 0.05	3 : 0.05	] : 0.05	4 : 0.03	e : 0.01	> : 0.01	a : 0.01	
g : 0.20	c : 0.13	4 : 0.11	d : 0.09	h : 0.07	= : 0.07	f : 0.07	2 : 0.03	b : 0.03	3 : 0.03	a : 0.03	] : 0.03	e : 0.01	> : 0.01	
g : 0.20	d : 0.11	4 : 0.11	f : 0.11	h : 0.07	= : 0.07	] : 0.07	3 : 0.05	c : 0.05	2 : 0.05	e : 0.01	> : 0.01	b : 0.01	
g : 0.20	f : 0.13	4 : 0.11	h : 0.09	d : 0.09	= : 0.07	c : 0.07	3 : 0.05	e : 0.03	2 : 0.03	] : 0.03	a : 0.01	> : 0.01	
g : 0.20	f : 0.15	c : 0.13	4 : 0.13	h : 0.09	d : 0.07	] : 0.05	= : 0.05	3 : 0.03	e : 0.03	> : 0.01	
g : 0.15	c : 0.15	f : 0.13	d : 0.11	e : 0.09	h : 0.09	] : 0.07	4 : 0.07	2 : 0.03	= : 0.01	> : 0.01	3 : 0.01	b : 0.01	
c : 0.16	g : 0.15	e : 0.13	d : 0.11	f : 0.11	h : 0.09	4 : 0.05	2 : 0.03	b : 0.03	= : 0.01	> : 0.01	5 : 0.01	] : 0.01	3 : 0.01	
e : 0.15	c : 0.15	d : 0.11	g : 0.11	h : 0.09	f : 0.09	4 : 0.05	: : 0.05	] : 0.03	3 : 0.03	= : 0.01	> : 0.01	5 : 0.01	a : 0.01	b : 0.01	

#score	534.7705055846658
#seq	53
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_CDS_m2_run2.txt

#BEAR
b"""cccuuuuuuuuuuuuccc333	chr3:10347141-10347390(-)$1	249	51	76	23.7469
###ddddvvvvvvvvvvvvvdddda	chr10:70847837-70848087(+)$1	250	77	102	23.9317
f"""ccctttttttttttccc]fff	chr22:22892050-22892278(-)$1	228	82	107	22.2184
cffffffvvvvvvvvvvvvvfffff	chr6:31701335-31701549(-)$1	214	61	86	24.1240
eeeeeeeuuuuuuuuuuuueeeee]	chr15:64673056-64673328(-)$1	272	40	65	23.5959
gggggggvvvvvvvvvvvvvggggg	chr7:30656740-30656981(+)$1	241	203	228	24.5288
!!ddddvvvvvvvvvvvvvdddd22	chr7:99695360-99695612(-)$1	252	174	199	23.3054
Jccc!!bbtttttttttttbb22cc	chr4:99996034-99996299(-)$1	265	190	215	19.7650
""eeeeevvvvvvvvvvvvveeeee	chr1:182353504-182353753(-)$1	249	108	133	24.6354
eee[bbwwwwwwwwwwwwwwbbeee	chr1:160283726-160283961(-)$1	235	98	123	21.5524
::fffffftttttttttttffffff	chr1:145439545-145439765(+)$1	220	193	218	20.5760
dddd[ccctttttttttttccc]dd	chr11:18424425-18424660(+)$1	235	189	214	22.0257
:ffffffuuuuuuuuuuuuffffff	chr2:85824525-85824771(+)$1	246	143	168	22.5844
e[cccwwwwwwwwwwwwwwccceee	chr3:49397518-49397755(-)$1	237	184	209	21.8921
hhhhhhhvvvvvvvvvvvvvhhhhh	chr15:76575995-76576236(-)$1	241	58	83	22.1813
d[eeeeettttttttttteeeee22	chr5:180665103-180665339(-)$1	236	35	60	22.0621
ff"""ccctttttttttttccc333	chr17:36916606-36916844(+)$1	238	35	60	22.3563
[ffffffvvvvvvvvvvvvvfffff	chr11:32610100-32610379(+)$1	279	26	51	24.2221
::eeeeewwwwwwwwwwwwwweeee	chr13:46718497-46718756(-)$1	259	230	255	21.1295
::eeeeeuuuuuuuuuuuueeeee:	chrX:118603744-118604000(+)$1	256	40	65	21.2107
c[eeeeevvvvvvvvvvvvveeeee	chr5:177019492-177019747(+)$1	255	23	48	24.6126
dd[bb[bbtttttttttttbb]bb]	chr3:156272722-156273008(-)$1	286	96	121	20.4135
!!eeeeeyyyyyyyyyyyyyyyyee	chr1:109953532-109953795(-)$1	263	167	192	19.4507
!ffffffuuuuuuuuuuuuffffff	chr16:21982783-21983042(+)$1	259	151	176	23.3605
cc!!cccvvvvvvvvvvvvvccc22	chr17:45299082-45299321(+)$1	239	145	170	24.3982
gggggggwwwwwwwwwwwwwwgggg	chr10:7830054-7830320(+)$1	266	181	206	22.6785
hhhhhhhvvvvvvvvvvvvvhhhhh	chrX:77380418-77380648(+)$1	230	184	209	22.1813
[fffffftttttttttttffffff]	chr17:61657108-61657389(+)$1	281	197	222	22.2057
Dgggggggtttttttttttgggggg	chr6:49582352-49582624(-)$1	272	25	50	21.5322
[fffffftttttttttttffffff]	chr22:29695644-29695930(+)$1	286	90	115	22.2057
hhhhhhhwwwwwwwwwwwwwwhhhh	chr1:109957828-109958086(-)$1	258	192	217	20.5188
dbbdddduuuuuuuuuuuudddd]b	chr14:102483000-102483248(+)$1	248	77	102	22.0965
ee[ddddtttttttttttdddd]ee	chr1:155288361-155288616(+)$1	255	39	64	21.7858
gggggggvvvvvvvvvvvvvggggg	chr11:67352592-67352811(+)$1	219	148	173	24.5288
eee[bbwwwwwwwwwwwwwwbb]ee	chr6:32147905-32148149(+)$1	244	78	103	21.6113
dddddddvvvvvvvvvvvvvdddd]	chr12:50152425-50152647(+)$1	222	27	52	23.6873
:ffffffvvvvvvvvvvvvvfffff	chr2:97541864-97542120(-)$1	256	51	76	23.5064
[ddddavvvvvvvvvvvvva]dddd	chr1:113471613-113471855(-)$1	242	160	185	22.9887
:ccccccuuuuuuuuuuuuccc]cc	chr12:53291186-53291503(-)$1	317	0	25	23.0243
:ffffffuuuuuuuuuuuuffffff	chrX:154444700-154444954(+)$1	254	79	104	22.5844
gggggggvvvvvvvvvvvvvggggg	chr7:97482371-97482629(-)$1	258	217	242	24.5288
bb[cccvvvvvvvvvvvvvccc]bb	chr9:35056965-35057220(-)$1	255	90	115	23.0881
:ffffffvvvvvvvvvvvvvfffff	chr1:162535970-162536236(+)$1	266	151	176	23.5064
e!!dddduuuuuuuuuuuuddddee	chr16:56643074-56643305(+)$1	231	119	144	23.1831
(eeeeevvvvvvvvvvvvveeeee6	chr19:13051322-13051567(+)$1	245	47	72	22.7723
ha[ddddtttttttttttdddd]a]	chr16:31201335-31201563(+)$1	228	68	93	21.8301
HHccc[bbuuuuuuuuuuuubb]cc	chr1:20980041-20980306(-)$1	265	50	75	20.6661
ffeeeeeuuuuuuuuuuuueeeee3	chr5:133496652-133496922(-)$1	270	201	226	23.5225
dddeeeeettttttttttteeeee]	chr3:139086885-139087118(-)$1	233	27	52	22.2081
JJeeeeeuuuuuuuuuuuueeeee:	chr16:31198046-31198257(+)$1	211	120	145	20.1918
####cccvvvvvvvvvvvvvccc77	chr17:76170906-76171128(-)$1	222	44	69	23.2547
###dddduuuuuuuuuuuudddd22	chr15:78834785-78835043(+)$1	258	142	167	22.9659
========ttttttttttt======	chr6:44221169-44221421(+)$1	252	4	29	22.4158
!!ddddwwwwwwwwwwwwwwdddd]	chr1:33137972-33138227(+)$1	255	161	186	22.6135

#otherMatches

#Seq PSSM
UACCUGGAAGCCUCAUAGACCACCC	chr3:10347141-10347390(-)$1	249	51	76	23.7469
UGAUGCAGAAGCUACUCAAAUGCAG	chr10:70847837-70848087(+)$1	250	77	102	23.9317
AUGUGGACUCUUUAUUUUUCCUUAG	chr22:22892050-22892278(-)$1	228	82	107	22.2184
AGGAAGACAUCUUACCUCAUUUUUC	chr6:31701335-31701549(-)$1	214	61	86	24.1240
GUCGGAACCCUCCUGCCCCUUCUGA	chr15:64673056-64673328(-)$1	272	40	65	23.5959
GCACAGGUACCAAAUGAAUUUUUGU	chr7:30656740-30656981(+)$1	241	203	228	24.5288
AGAGGAAAUUCCGUUUACAUCCUAG	chr7:99695360-99695612(-)$1	252	174	199	23.3054
UCCAGCUGGUAACAGGUCGCACAUG	chr4:99996034-99996299(-)$1	265	190	215	19.7650
UCGUCGCCCCUCUGCCAACUGCGAC	chr1:182353504-182353753(-)$1	249	108	133	24.6354
UUGUGCCGUCUUCCACCCUCGCCAA	chr1:160283726-160283961(-)$1	235	98	123	21.5524
CUUGGAGAGCGUUUUAAAAUUUUCA	chr1:145439545-145439765(+)$1	220	193	218	20.5760
GGGCAUUAUAUUAUUCAAUUAGAGC	chr11:18424425-18424660(+)$1	235	189	214	22.0257
UAACCUUGAAUCCUCAUUAAAGGUU	chr2:85824525-85824771(+)$1	246	143	168	22.5844
ACUGGCCUUUUUCAUUUAUCUAUAA	chr3:49397518-49397755(-)$1	237	184	209	21.8921
UUUUUAAAUGAGGUCGAGGCUUGAA	chr15:76575995-76576236(-)$1	241	58	83	22.1813
UGAGAUGGGCAGAAUUAACAUCUGG	chr5:180665103-180665339(-)$1	236	35	60	22.0621
UUCUUGAGUUCUGGUUUCUCUCUCU	chr17:36916606-36916844(+)$1	238	35	60	22.3563
CAUACUUGUGUAGAUGUUGAAAGUG	chr11:32610100-32610379(+)$1	279	26	51	24.2221
GCCAUAGGAUUCCAAAUACCACUAU	chr13:46718497-46718756(-)$1	259	230	255	21.1295
CAAAGAUAAAUACAAGCAGAUCUUC	chrX:118603744-118604000(+)$1	256	40	65	21.2107
GUCGCGGAACCCAUGCCACCUCGCG	chr5:177019492-177019747(+)$1	255	23	48	24.6126
CUCUACGUUCCCUGUUCUCGCCUGC	chr3:156272722-156273008(-)$1	286	96	121	20.4135
UUAAGUAUUCUCACAACUCUUACUA	chr1:109953532-109953795(-)$1	263	167	192	19.4507
CGUGGAGGUAAGCAUUUCAUUCUAU	chr16:21982783-21983042(+)$1	259	151	176	23.3605
CAGCUGGGCAGAGAUGAAGACCAAG	chr17:45299082-45299321(+)$1	239	145	170	24.3982
CUUGCGGGAAGAUCGGCAGGACCGC	chr10:7830054-7830320(+)$1	266	181	206	22.6785
GAGGAAGGUGGAAUGGAGAACUUCU	chrX:77380418-77380648(+)$1	230	184	209	22.1813
UAAGAUGCUUUUCCAUUUCGUCUUU	chr17:61657108-61657389(+)$1	281	197	222	22.2057
AGAACUAAUAUCCCCUCUUUUGGUU	chr6:49582352-49582624(-)$1	272	25	50	21.5322
GGCUUUGGUGGAGGAAGACGAGGUG	chr22:29695644-29695930(+)$1	286	90	115	22.2057
GCAUUGAGAAAAUUGUAGAGAUUGA	chr1:109957828-109958086(-)$1	258	192	217	20.5188
CUCACACUUCCAUCUCCGUGUGUAG	chr14:102483000-102483248(+)$1	248	77	102	22.0965
GGGUUUCGCAUAUCUGGAGAAAGCC	chr1:155288361-155288616(+)$1	255	39	64	21.7858
GGGGGCUGAACAAAGAAAGGGGCUU	chr11:67352592-67352811(+)$1	219	148	173	24.5288
ACAGCUUUCCUCUCUCCCACAGGUG	chr6:32147905-32148149(+)$1	244	78	103	21.6113
CUGUGUCUUAUAGGUAUCUUGAUGU	chr12:50152425-50152647(+)$1	222	27	52	23.6873
AGCCUGCUUUUCUCCUCGCCGCAGG	chr2:97541864-97542120(-)$1	256	51	76	23.5064
CUGCUCUUUUAAUUUUCAUGAAGCA	chr1:113471613-113471855(-)$1	242	160	185	22.9887
CCAUCCCUGGGGCUAUGUUGGGAAU	chr12:53291186-53291503(-)$1	317	0	25	23.0243
UUGUGGCAAAGGAGAAAUGGCCACA	chrX:154444700-154444954(+)$1	254	79	104	22.5844
AUUCCUGGUUUAAGAUUUUACAGGA	chr7:97482371-97482629(-)$1	258	217	242	24.5288
AUGACCUGUAUGGCUAAGUGGUGGU	chr9:35056965-35057220(-)$1	255	90	115	23.0881
GGCCUGGGAAAGUGAAGGUACUGGG	chr1:162535970-162536236(+)$1	266	151	176	23.5064
UGUGGGCUGUGCCAAGUGUGCCCAG	chr16:56643074-56643305(+)$1	231	119	144	23.1831
GAGCAUAUCCCUGACCCUGAUGCUA	chr19:13051322-13051567(+)$1	245	47	72	22.7723
UCGCCGGGCAGACUUUAAUCGGGGU	chr16:31201335-31201563(+)$1	228	68	93	21.8301
CAGGCAACUAUGAACUAGCUGUGGC	chr1:20980041-20980306(-)$1	265	50	75	20.6661
AAUUCCUGAAAGUUGACCAAGGAAC	chr5:133496652-133496922(-)$1	270	201	226	23.5225
ACUGAGGAAUCAUUUUUUAUCCUUA	chr3:139086885-139087118(-)$1	233	27	52	22.2081
CAGAGUUUCCAAAAUUCCCAACUCC	chr16:31198046-31198257(+)$1	211	120	145	20.1918
CUCUGCCUCCUUCCUGUCCUGGCCC	chr17:76170906-76171128(-)$1	222	44	69	23.2547
CAACAUCCACAAGCUUCUUGAUGAA	chr15:78834785-78835043(+)$1	258	142	167	22.9659
AUUUGACUUAAUGCUAUUUGGUCAA	chr6:44221169-44221421(+)$1	252	4	29	22.4158
CUUGUAUUCAUUCCUCUCUCUACAU	chr1:33137972-33138227(+)$1	255	161	186	22.6135

#DB
(...(((............)))...	chr3:10347141-10347390(-)$1	1	51	76	23.7469
...((((.............)))))	chr10:70847837-70848087(+)$1	1	77	102	23.9317
(...(((...........))).)))	chr22:22892050-22892278(-)$1	1	82	107	22.2184
(((((((.............)))))	chr6:31701335-31701549(-)$1	1	61	86	24.1240
(((((((............))))).	chr15:64673056-64673328(-)$1	1	40	65	23.5959
(((((((.............)))))	chr7:30656740-30656981(+)$1	1	203	228	24.5288
..((((.............))))..	chr7:99695360-99695612(-)$1	1	174	199	23.3054
((((..((...........))..))	chr4:99996034-99996299(-)$1	1	190	215	19.7650
..(((((.............)))))	chr1:182353504-182353753(-)$1	1	108	133	24.6354
(((.((..............)))))	chr1:160283726-160283961(-)$1	1	98	123	21.5524
..((((((...........))))))	chr1:145439545-145439765(+)$1	1	193	218	20.5760
((((.(((...........))).))	chr11:18424425-18424660(+)$1	1	189	214	22.0257
.((((((............))))))	chr2:85824525-85824771(+)$1	1	143	168	22.5844
(.(((..............))))))	chr3:49397518-49397755(-)$1	1	184	209	21.8921
(((((((.............)))))	chr15:76575995-76576236(-)$1	1	58	83	22.1813
(.(((((...........)))))..	chr5:180665103-180665339(-)$1	1	35	60	22.0621
((...(((...........)))...	chr17:36916606-36916844(+)$1	1	35	60	22.3563
.((((((.............)))))	chr11:32610100-32610379(+)$1	1	26	51	24.2221
..(((((..............))))	chr13:46718497-46718756(-)$1	1	230	255	21.1295
..(((((............))))).	chrX:118603744-118604000(+)$1	1	40	65	21.2107
(.(((((.............)))))	chr5:177019492-177019747(+)$1	1	23	48	24.6126
((.((.((...........)).)).	chr3:156272722-156273008(-)$1	1	96	121	20.4135
..(((((................))	chr1:109953532-109953795(-)$1	1	167	192	19.4507
.((((((............))))))	chr16:21982783-21983042(+)$1	1	151	176	23.3605
((..(((.............)))..	chr17:45299082-45299321(+)$1	1	145	170	24.3982
(((((((..............))))	chr10:7830054-7830320(+)$1	1	181	206	22.6785
(((((((.............)))))	chrX:77380418-77380648(+)$1	1	184	209	22.1813
.((((((...........)))))).	chr17:61657108-61657389(+)$1	1	197	222	22.2057
((((((((...........))))))	chr6:49582352-49582624(-)$1	1	25	50	21.5322
.((((((...........)))))).	chr22:29695644-29695930(+)$1	1	90	115	22.2057
(((((((..............))))	chr1:109957828-109958086(-)$1	1	192	217	20.5188
(((((((............)))).)	chr14:102483000-102483248(+)$1	1	77	102	22.0965
((.((((...........)))).))	chr1:155288361-155288616(+)$1	1	39	64	21.7858
(((((((.............)))))	chr11:67352592-67352811(+)$1	1	148	173	24.5288
(((.((..............)).))	chr6:32147905-32148149(+)$1	1	78	103	21.6113
(((((((.............)))).	chr12:50152425-50152647(+)$1	1	27	52	23.6873
.((((((.............)))))	chr2:97541864-97542120(-)$1	1	51	76	23.5064
.(((((.............).))))	chr1:113471613-113471855(-)$1	1	160	185	22.9887
.((((((............))).))	chr12:53291186-53291503(-)$1	1	0	25	23.0243
.((((((............))))))	chrX:154444700-154444954(+)$1	1	79	104	22.5844
(((((((.............)))))	chr7:97482371-97482629(-)$1	1	217	242	24.5288
((.(((.............))).))	chr9:35056965-35057220(-)$1	1	90	115	23.0881
.((((((.............)))))	chr1:162535970-162536236(+)$1	1	151	176	23.5064
(..((((............))))))	chr16:56643074-56643305(+)$1	1	119	144	23.1831
.(((((.............))))).	chr19:13051322-13051567(+)$1	1	47	72	22.7723
((.((((...........)))).).	chr16:31201335-31201563(+)$1	1	68	93	21.8301
(((((.((............)).))	chr1:20980041-20980306(-)$1	1	50	75	20.6661
(((((((............))))).	chr5:133496652-133496922(-)$1	1	201	226	23.5225
((((((((...........))))).	chr3:139086885-139087118(-)$1	1	27	52	22.2081
(((((((............))))).	chr16:31198046-31198257(+)$1	1	120	145	20.1918
....(((.............)))..	chr17:76170906-76171128(-)$1	1	44	69	23.2547
...((((............))))..	chr15:78834785-78835043(+)$1	1	142	167	22.9659
((((((((...........))))))	chr6:44221169-44221421(+)$1	1	4	29	22.4158
..((((..............)))).	chr1:33137972-33138227(+)$1	1	161	186	22.6135

#PSSM
: : 0.14	e : 0.11	d : 0.11	g : 0.07	! : 0.07	h : 0.07	[ : 0.07	# : 0.05	f : 0.05	c : 0.05	b : 0.03	J : 0.03	" : 0.01	D : 0.01	( : 0.01	H : 0.01	= : 0.01	
f : 0.20	e : 0.09	g : 0.09	d : 0.09	! : 0.07	" : 0.05	# : 0.05	c : 0.05	: : 0.05	[ : 0.05	h : 0.05	b : 0.03	a : 0.01	H : 0.01	J : 0.01	= : 0.01	
e : 0.22	f : 0.18	d : 0.11	g : 0.09	c : 0.07	[ : 0.07	" : 0.05	# : 0.05	h : 0.05	! : 0.03	b : 0.01	= : 0.01	
d : 0.20	e : 0.20	f : 0.18	g : 0.09	c : 0.09	" : 0.05	h : 0.05	[ : 0.03	b : 0.01	! : 0.01	# : 0.01	= : 0.01	
e : 0.20	d : 0.18	f : 0.18	c : 0.14	g : 0.09	b : 0.05	h : 0.05	! : 0.01	[ : 0.01	" : 0.01	= : 0.01	
e : 0.20	f : 0.18	d : 0.16	c : 0.14	g : 0.09	h : 0.05	b : 0.03	[ : 0.03	! : 0.01	w : 0.01	a : 0.01	= : 0.01	
f : 0.18	e : 0.18	c : 0.12	d : 0.12	g : 0.09	v : 0.07	w : 0.07	b : 0.05	h : 0.05	= : 0.01	
v : 0.35	u : 0.22	w : 0.12	t : 0.11	b : 0.05	c : 0.03	f : 0.01	y : 0.01	g : 0.01	e : 0.01	= : 0.01	
v : 0.35	t : 0.25	u : 0.24	w : 0.12	y : 0.01	
v : 0.35	t : 0.25	u : 0.24	w : 0.12	y : 0.01	
v : 0.35	t : 0.25	u : 0.24	w : 0.12	y : 0.01	
v : 0.35	t : 0.25	u : 0.24	w : 0.12	y : 0.01	
v : 0.35	t : 0.25	u : 0.24	w : 0.12	y : 0.01	
v : 0.35	t : 0.25	u : 0.24	w : 0.12	y : 0.01	
v : 0.35	t : 0.25	u : 0.24	w : 0.12	y : 0.01	
v : 0.35	t : 0.25	u : 0.24	w : 0.12	y : 0.01	
v : 0.35	t : 0.25	u : 0.24	w : 0.12	y : 0.01	
v : 0.35	t : 0.25	u : 0.24	w : 0.12	y : 0.01	
v : 0.35	u : 0.24	t : 0.14	w : 0.12	f : 0.03	d : 0.03	c : 0.01	e : 0.01	y : 0.01	
v : 0.27	c : 0.12	e : 0.12	d : 0.11	w : 0.11	f : 0.11	b : 0.03	y : 0.01	g : 0.01	a : 0.01	u : 0.01	= : 0.01	
f : 0.18	c : 0.16	d : 0.16	e : 0.16	b : 0.09	g : 0.07	w : 0.05	h : 0.03	y : 0.01	] : 0.01	= : 0.01	
d : 0.18	f : 0.18	e : 0.18	c : 0.14	g : 0.09	b : 0.05	h : 0.05	] : 0.03	2 : 0.01	y : 0.01	= : 0.01	
e : 0.22	f : 0.20	d : 0.14	] : 0.12	g : 0.09	h : 0.05	3 : 0.03	c : 0.03	2 : 0.01	b : 0.01	y : 0.01	= : 0.01	
e : 0.27	f : 0.20	d : 0.09	g : 0.09	2 : 0.07	c : 0.05	h : 0.05	3 : 0.03	b : 0.03	] : 0.01	a : 0.01	7 : 0.01	= : 0.01	
f : 0.16	e : 0.16	] : 0.14	g : 0.09	2 : 0.07	3 : 0.05	c : 0.05	h : 0.05	d : 0.03	: : 0.03	b : 0.03	a : 0.01	6 : 0.01	7 : 0.01	= : 0.01	

#score	1217.7656235485815
#seq	54
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_UTR_m2_run2.txt

#BEAR
========[cccooooooccc==========	chr9:35731968-35732218(-)$1	250	190	221	10.1083
fffeeeee[ddddmmmmdddd333eeeee]f	chrX:153714773-153715061(-)$1	288	3	34	11.2871
dd[eeeeeccc[ccclllccc22ccc22eee	chr7:5632349-5632603(+)$1	254	74	105	11.1629
####ggggggg[bbmmmmbb]gggggggbb]	chr5:177019109-177019377(+)$1	268	22	53	9.9998
ee####eeeeecccmmmmccc]eeeee]eee	chr1:226374195-226374517(-)$1	322	165	196	12.2416
f####eeeee[cccmmmmccceeeeefffff	chr6:76311513-76311820(+)$1	307	176	207	11.8892
ffff[bb[bb[cccmmmmccc]bb]bbffff	chr3:9439214-9439560(+)$1	346	141	172	9.8897
[dddd[ccc!!cccmmmmccc333ccc]ddd	chr8:48873463-48873677(+)$1	214	174	205	13.2659
cc[eeeee"""bboooooobb333eeeeecc	chr10:106014857-106015129(+)$1	272	106	137	11.6332
ffff[eeeee[cccmmmmccceeeeefffff	chr4:83294986-83295211(-)$1	225	27	58	12.0040
!eeeee!!a[ddddmmmmdddd]a]eeeee2	chr15:52311413-52311673(+)$1	260	163	194	12.7169
dccc[ccc[a[cccmmmmccc22a]ccc]cc	chr5:79950491-79950776(-)$1	285	94	125	13.3648
cc[ggggggg!!bbmmmmbb22gggggggcc	chr2:85843198-85843539(+)$1	341	102	133	11.7898
eee[ccc"""ddddmmmmdddd333ccceee	chr1:54411126-54411446(-)$1	320	58	89	12.9504
""ccc$$$$$ddddmmmmdddd]cccdddd]	chr1:231175687-231176070(-)$1	383	197	228	10.6210
ffff[dddd!!cccmmmmccc22ddddffff	chr6:137540278-137540552(-)$1	274	181	212	13.1121
$eeeee[ccc[ddddllldddd]ccc]eeee	chrX:55246755-55246986(+)$1	231	125	156	10.7878
ffff[dddd!!cccmmmmccc]ddddfffff	chr3:48594012-48594349(-)$1	337	27	58	12.2027
e"""ccc####cccmmmmccc]ccc]eeeee	chr20:34542124-34542389(-)$1	265	111	142	13.2272
dd!!eeeee[ddddmmmmdddd22eeeee22	chr14:68066681-68067062(-)$1	381	27	58	12.3921
!eeeeeccc!!bboooooobb22ccc22eee	chr11:129979234-129979577(+)$1	343	94	125	10.7415
ggggdddd!!ddddmmmmdddd22ddddccc	chr4:89444749-89445015(-)$1	266	105	136	11.7279
fff!!dddda[cccmmmmccc]a]dddd22f	chr6:35656478-35656798(-)$1	320	246	277	12.1165
ccc[ffffff!!bbmmmmbb22ffffff22c	chr5:82373039-82373301(-)$1	262	219	250	10.2685
dd[a[eeeeeddddmmmmdddd4444eeeee	chr12:120966725-120967018(-)$1	293	85	116	12.4511
e"""eeeee!!bboooooobb22eeeee]ee	chr11:61559927-61560132(-)$1	205	8	39	11.3218
c[ccca[eeeeeccclllccc]eeeee]a]c	chr6:119670662-119670927(-)$1	265	14	45	10.1255
ddddddd$$$$$bbmmmmbb4444dddd]dd	chr9:137001131-137001423(+)$1	292	235	266	10.6039
$$$eeeee!!ddddmmmmdddd]eeeee22b	chr11:65686788-65687114(+)$1	326	118	149	11.8492
ffffff"""cccooooooccc4444ffffff	chr2:11605798-11606087(-)$1	289	14	45	9.9566
fffff[a!!cccbbmmmmbb]ccc]a]ffff	chr16:30092484-30092731(+)$1	247	82	113	10.6772
eeeee[ccc!!bboooooobb22ccc]eeee	chr11:61100332-61100659(-)$1	327	140	171	11.0592
b[dddd[gggggggmmmmgggggggdddd]b	chr5:179125877-179126129(+)$1	252	89	120	9.5155
hhhhhh[bb!!cccmmmmccc22bb]hhhhh	chr7:107204372-107204659(+)$1	287	133	164	10.5966
hhhhhhh"""ddddmmmmdddd333hhhhhh	chr1:6295684-6296089(-)$1	405	94	125	10.6174
$$$$$eeeee!!ccclllccc22eeeee22e	chr5:53606181-53606453(-)$1	272	117	148	10.8752
eeeee!!bb[ddddmmmmdddd]bb]eeeee	chr2:176860180-176860476(-)$1	296	248	279	11.5314
:ggggggg[a!!ccclllccc22aggggggg	chr22:41252436-41252701(-)$1	265	165	196	10.8996
eeee[eeeee!!bbmmmmbbeeeee]eeeee	chr9:131451524-131451765(+)$1	241	113	144	11.9387
beeeee!!a!!cccmmmmccc22aeeeeegg	chr20:57582054-57582394(-)$1	340	207	238	14.2341
bbbb[ccc"""ddddllldddd333ccc]bb	chr6:125474858-125475217(+)$1	359	294	325	10.0127
dddd[dddd[ddddmmmmdddd]dddd]ddd	chr10:11784292-11784634(+)$1	342	79	110	11.1305
[ffffffeeeeebbmmmmbb333eeeee]ff	chr19:41944121-41944420(-)$1	299	108	139	11.7502
eeee!!dddd[cccmmmmccc]dddd333ee	chr5:133304123-133304398(-)$1	275	185	216	12.1339
ffffff[ccc!!bbmmmmbb22ccc]fffff	chr17:48796865-48797135(+)$1	270	185	216	11.3649
dd[a[eeeee!!bbmmmmbb22eeeeea]dd	chr3:48040177-48040470(-)$1	293	135	166	11.9637
eeee[iiiiiiiiimmmmiiiiiiiii22ee	chr20:8000114-8000469(-)$1	355	67	98	11.0231
[ccc[ccc####bbmmmmbb22cccccc22g	chr6:170862234-170862483(-)$1	249	124	155	11.9999
hh!!a!!ccc!!ccclllccc22ccc22a22	chr5:110427935-110428277(+)$1	342	40	71	10.8271
cbb[eeeee[ddddmmmmdddd333eeeeeb	chr6:170123839-170124210(-)$1	371	298	329	12.3876
dddd[a[ccc[cccmmmmccc]ccc]a]ddd	chr2:198364403-198364628(-)$1	225	162	193	11.9524
eeee!!ccc[ddddmmmmdddd22ccceeee	chr8:124279425-124279718(-)$1	293	120	151	12.7271
bb[dddd"""ddddmmmmdddd]ddddbb]b	chr11:118272264-118272479(+)$1	215	175	206	10.6055
!!eeeee####ddddllldddd]eeeeefff	chr4:186064325-186064723(+)$1	398	250	281	11.4138

#otherMatches

#Seq PSSM
ggggccuggccccggggcgggcgggccCUGC	chr9:35731968-35732218(-)$1	250	190	221	10.1083
agcgcgggcggcgggcgCGCCCCUCUCGCUG	chrX:153714773-153715061(-)$1	288	3	34	11.2871
CGGGGCGCCGCUAGCUGGGCUUUGUGGAGCG	chr7:5632349-5632603(+)$1	254	74	105	11.1629
GAACUCGCGGUCCCGGCAGGCACCGCGGCGG	chr5:177019109-177019377(+)$1	268	22	53	9.9998
CGACUCGAGGUGUCCGUCGACGGCCUCACGC	chr1:226374195-226374517(-)$1	322	165	196	12.2416
UGAUGCAUUCACGCCUGGGCGGGGUGGGCGG	chr6:76311513-76311820(+)$1	307	176	207	11.8892
cgccgccgccgccgcugccgGGGGAGGGGCG	chr3:9439214-9439560(+)$1	346	141	172	9.8897
AGGGCAGGGAAGCCGGGAGGCGGGCCCGGCC	chr8:48873463-48873677(+)$1	214	174	205	13.2659
CUACAGCAUGAGGUUCUGCCCGUUUGCUGAG	chr10:106014857-106015129(+)$1	272	106	137	11.6332
CGCGCUCUCGCGUCACGUGACCGGGACGCGC	chr4:83294986-83295211(-)$1	225	27	58	12.0040
AGUGUGUGUGUGUACGUGUGCGGGGUgcgcc	chr15:52311413-52311673(+)$1	260	163	194	12.7169
GGUCGGCUGCACCUGUGGAGGAGGAGGUGGA	chr5:79950491-79950776(-)$1	285	94	125	13.3648
ACUCGGCCGGUAGUGGAGAUGUCCGGCCGGU	chr2:85843198-85843539(+)$1	341	102	133	11.7898
GUGGCGCGAAGAUUUCAGAGUUGGAGCGCGC	chr1:54411126-54411446(-)$1	320	58	89	12.9504
AAGAGCUUGAGCGGGCUGCUGCACUCGGCGU	chr1:231175687-231176070(-)$1	383	197	228	10.6210
GUUCGCGGCAGGGCUGCGGCCGGGUCGGGAC	chr6:137540278-137540552(-)$1	274	181	212	13.1121
AGCCGGUAGGUCUGCAGAGUGGUCUUCCUGG	chrX:55246755-55246986(+)$1	231	125	156	10.7878
GGCUGUCGCGGCUUGAGGAGGGGCGGGGCCC	chr3:48594012-48594349(-)$1	337	27	58	12.2027
ACCCCACCCCCGCGCAGACGCAGUGCUGAGC	chr20:34542124-34542389(-)$1	265	111	142	13.2272
UUAGGGCGGGGCGUGGUGACGCGGCUGCCGG	chr14:68066681-68067062(-)$1	381	27	58	12.3921
UGCAGCCAAUGCCGGAACAGGAUUUGCUGUU	chr11:129979234-129979577(+)$1	343	94	125	10.7415
CGGGAGCUCGGCCACGGGUGGCGAGGCUGCG	chr4:89444749-89445015(-)$1	266	105	136	11.7279
gcggccggccgcggcgccccgggAGCCGAAC	chr6:35656478-35656798(-)$1	320	246	277	12.1165
ACUAGGGCUGGAGUUUGUGCGGCAGCCCGGG	chr5:82373039-82373301(-)$1	262	219	250	10.2685
CGGGAGCUGUGCUCUAUGGAGCUAUUGCGGC	chr12:120966725-120967018(-)$1	293	85	116	12.4511
CGGAGGCACUUCCUUUUCCGGUUGUGCUAGG	chr11:61559927-61560132(-)$1	205	8	39	11.3218
CCGCGGCGGAGUGUACCGUGCUGCUCUACUC	chr6:119670662-119670927(-)$1	265	14	45	10.1255
GGGGCGGCGCCAGAAGCUUCCAAAccgcacc	chr9:137001131-137001423(+)$1	292	235	266	10.6039
CAGGCCCGGGAGCCGGGAGGCUGCGGGCGGC	chr11:65686788-65687114(+)$1	326	118	149	11.8492
CGAGCUGAGCGCGAGAGGGCGGGAGAGCUCG	chr2:11605798-11606087(-)$1	289	14	45	9.9566
CUCCUGUCUCCAGAGAGAUCUUGGUAGAGGA	chr16:30092484-30092731(+)$1	247	82	113	10.6772
GGGGGCCACCUGUCUUUUCGCUUGUGUCCCU	chr11:61100332-61100659(-)$1	327	140	171	11.0592
CAGCGGUGGCCGAGGCCUCUUGGUUCUGCGG	chr5:179125877-179126129(+)$1	252	89	120	9.5155
UACUCGAGCAGUGGGCGCCCAGGGUCCGAGU	chr7:107204372-107204659(+)$1	287	133	164	10.5966
cccgcuaguccgccgcccggcgccauggcgg	chr1:6295684-6296089(-)$1	405	94	125	10.6174
gccguuccggaugcuuuaggcugccggaugu	chr5:53606181-53606453(-)$1	272	117	148	10.8752
GCUAUUUGUGAAAGUCUCCUUUGAUUAUAGC	chr2:176860180-176860476(-)$1	296	248	279	11.5314
CCGCAAAGUGAACGAGCUUCGGGCCUUUGUG	chr22:41252436-41252701(-)$1	265	165	196	10.8996
gggccggggcccggcacgccgccccAGCCCG	chr9:131451524-131451765(+)$1	241	113	144	11.9387
ggccauggcgaggcgcgggccaggguggcgg	chr20:57582054-57582394(-)$1	340	207	238	14.2341
GGGGCGCGCAUAAAGGCUCUUUUCCUGCACC	chr6:125474858-125475217(+)$1	359	294	325	10.0127
gggcggggcgUAGUACGGACUGGGCCUGGCC	chr10:11784292-11784634(+)$1	342	79	110	11.1305
GCCUGGUCGCCCCCAUGUGGAAUGGGCGUAU	chr19:41944121-41944420(-)$1	299	108	139	11.7502
GGCCAUCCAAGCCCUUGUGGGGUUGGCGCGG	chr5:133304123-133304398(-)$1	275	185	216	12.1339
CGGGUGCCUGGGCUGGUGGGAACAGCCGCCC	chr17:48796865-48797135(+)$1	270	185	216	11.3649
CUUGCAGAUGCAUUAACAGAACCAUCUCCAG	chr3:48040177-48040470(-)$1	293	135	166	11.9637
CGCCAGUCUGCGCCGCUAGGCGUAGGCGGGG	chr20:8000114-8000469(-)$1	355	67	98	11.0231
AGUGUCGGAUCCGCAGGCGCAGCCGUGCGAU	chr6:170862234-170862483(-)$1	249	124	155	11.9999
GGGAGAACUUUAUGUGUUGCACUGAGGGCAG	chr5:110427935-110428277(+)$1	342	40	71	10.8271
CUGACCCCGUCCCGGGCCUGGGUGCCGGGGC	chr6:170123839-170124210(-)$1	371	298	329	12.3876
GACCCCCGAGUGGGCCUUCCUCCUCUGCGGU	chr2:198364403-198364628(-)$1	225	162	193	11.9524
UUGGUAAUGAUGGCCUGAGCUAAACAUCUAA	chr8:124279425-124279718(-)$1	293	120	151	12.7271
CGAUGUGAGACCGCCGAGGCGGGCACACGGG	chr11:118272264-118272479(+)$1	215	175	206	10.6055
UCGCCGCUGCCGUCUCCAAGACCGCGGUCGC	chr4:186064325-186064723(+)$1	398	250	281	11.4138

#DB
((((((((.(((......)))))))))))))	chr9:35731968-35732218(-)$1	1	190	221	10.1083
((((((((.((((....))))...))))).)	chrX:153714773-153715061(-)$1	1	3	34	11.2871
((.((((((((.(((...)))..)))..)))	chr7:5632349-5632603(+)$1	1	74	105	11.1629
....(((((((.((....)).))))))))).	chr5:177019109-177019377(+)$1	1	22	53	9.9998
((....((((((((....))).))))).)))	chr1:226374195-226374517(-)$1	1	165	196	12.2416
(....(((((.(((....)))))))))))))	chr6:76311513-76311820(+)$1	1	176	207	11.8892
((((.((.((.(((....))).)).))))))	chr3:9439214-9439560(+)$1	1	141	172	9.8897
.((((.(((..(((....)))...))).)))	chr8:48873463-48873677(+)$1	1	174	205	13.2659
((.(((((...((......))...)))))))	chr10:106014857-106015129(+)$1	1	106	137	11.6332
((((.(((((.(((....)))))))))))))	chr4:83294986-83295211(-)$1	1	27	58	12.0040
.(((((..(.((((....)))).).))))).	chr15:52311413-52311673(+)$1	1	163	194	12.7169
((((.(((.(.(((....)))..).))).))	chr5:79950491-79950776(-)$1	1	94	125	13.3648
((.(((((((..((....))..)))))))))	chr2:85843198-85843539(+)$1	1	102	133	11.7898
(((.(((...((((....))))...))))))	chr1:54411126-54411446(-)$1	1	58	89	12.9504
..(((.....((((....)))).))))))).	chr1:231175687-231176070(-)$1	1	197	228	10.6210
((((.((((..(((....)))..))))))))	chr6:137540278-137540552(-)$1	1	181	212	13.1121
.(((((.(((.((((...)))).))).))))	chrX:55246755-55246986(+)$1	1	125	156	10.7878
((((.((((..(((....))).)))))))))	chr3:48594012-48594349(-)$1	1	27	58	12.2027
(...(((....(((....))).))).)))))	chr20:34542124-34542389(-)$1	1	111	142	13.2272
((..(((((.((((....))))..)))))..	chr14:68066681-68067062(-)$1	1	27	58	12.3921
.((((((((..((......))..)))..)))	chr11:129979234-129979577(+)$1	1	94	125	10.7415
))))((((..((((....))))..))))(((	chr4:89444749-89445015(-)$1	1	105	136	11.7279
(((..(((((.(((....))).).))))..)	chr6:35656478-35656798(-)$1	1	246	277	12.1165
(((.((((((..((....))..))))))..)	chr5:82373039-82373301(-)$1	1	219	250	10.2685
((.(.(((((((((....))))....)))))	chr12:120966725-120967018(-)$1	1	85	116	12.4511
(...(((((..((......))..))))).))	chr11:61559927-61560132(-)$1	1	8	39	11.3218
(.((((.((((((((...))).))))).).)	chr6:119670662-119670927(-)$1	1	14	45	10.1255
(((((((.....((....))....)))).))	chr9:137001131-137001423(+)$1	1	235	266	10.6039
...(((((..((((....)))).)))))..)	chr11:65686788-65687114(+)$1	1	118	149	11.8492
((((((...(((......)))....))))))	chr2:11605798-11606087(-)$1	1	14	45	9.9566
(((((.(..(((((....)).))).).))))	chr16:30092484-30092731(+)$1	1	82	113	10.6772
(((((.(((..((......))..))).))))	chr11:61100332-61100659(-)$1	1	140	171	11.0592
(.((((.(((((((....))))))))))).)	chr5:179125877-179126129(+)$1	1	89	120	9.5155
((((((.((..(((....)))..)).)))))	chr7:107204372-107204659(+)$1	1	133	164	10.5966
(((((((...((((....))))...))))))	chr1:6295684-6296089(-)$1	1	94	125	10.6174
.....(((((..(((...)))..)))))..)	chr5:53606181-53606453(-)$1	1	117	148	10.8752
(((((..((.((((....)))).)).)))))	chr2:176860180-176860476(-)$1	1	248	279	11.5314
.(((((((.(..(((...)))..))))))))	chr22:41252436-41252701(-)$1	1	165	196	10.8996
((((.(((((..((....))))))).)))))	chr9:131451524-131451765(+)$1	1	113	144	11.9387
)(((((..(..(((....)))..))))))((	chr20:57582054-57582394(-)$1	1	207	238	14.2341
((((.(((...((((...))))...))).))	chr6:125474858-125475217(+)$1	1	294	325	10.0127
((((.((((.((((....)))).)))).)))	chr10:11784292-11784634(+)$1	1	79	110	11.1305
.(((((((((((((....))...))))).))	chr19:41944121-41944420(-)$1	1	108	139	11.7502
((((..((((.(((....))).))))...))	chr5:133304123-133304398(-)$1	1	185	216	12.1339
((((((.(((..((....))..))).)))))	chr17:48796865-48797135(+)$1	1	185	216	11.3649
((.(.(((((..((....))..)))))).))	chr3:48040177-48040470(-)$1	1	135	166	11.9637
((((.(((((((((....)))))))))..))	chr20:8000114-8000469(-)$1	1	67	98	11.0231
.(((.(((....((....))..))))))..)	chr6:170862234-170862483(-)$1	1	124	155	11.9999
((..(..(((..(((...)))..)))..)..	chr5:110427935-110428277(+)$1	1	40	71	10.8271
(((.(((((.((((....))))...))))))	chr6:170123839-170124210(-)$1	1	298	329	12.3876
((((.(.(((.(((....))).))).).)))	chr2:198364403-198364628(-)$1	1	162	193	11.9524
((((..(((.((((....))))..)))))))	chr8:124279425-124279718(-)$1	1	120	151	12.7271
((.((((...((((....)))).)))))).)	chr11:118272264-118272479(+)$1	1	175	206	10.6055
..(((((....((((...)))).))))))))	chr4:186064325-186064723(+)$1	1	250	281	11.4138

#PSSM
f : 0.18	e : 0.18	d : 0.14	c : 0.09	b : 0.07	[ : 0.05	! : 0.05	$ : 0.05	h : 0.05	= : 0.01	# : 0.01	" : 0.01	g : 0.01	: : 0.01	
e : 0.22	f : 0.18	d : 0.14	c : 0.09	" : 0.05	h : 0.05	b : 0.05	# : 0.03	g : 0.03	[ : 0.03	$ : 0.03	= : 0.01	! : 0.01	
e : 0.22	f : 0.18	[ : 0.11	d : 0.09	c : 0.09	# : 0.05	" : 0.03	! : 0.03	g : 0.03	$ : 0.03	h : 0.03	b : 0.03	= : 0.01	
e : 0.27	f : 0.14	d : 0.11	c : 0.07	# : 0.05	g : 0.05	[ : 0.05	! : 0.05	" : 0.03	a : 0.03	h : 0.03	= : 0.01	$ : 0.01	b : 0.01	
e : 0.25	[ : 0.24	d : 0.09	f : 0.09	c : 0.07	g : 0.05	! : 0.05	# : 0.03	h : 0.03	= : 0.01	$ : 0.01	a : 0.01	
e : 0.33	d : 0.14	c : 0.09	f : 0.07	! : 0.07	g : 0.05	[ : 0.05	a : 0.03	h : 0.03	= : 0.01	# : 0.01	b : 0.01	$ : 0.01	i : 0.01	
e : 0.27	c : 0.16	d : 0.14	[ : 0.11	! : 0.07	g : 0.05	f : 0.03	= : 0.01	b : 0.01	$ : 0.01	" : 0.01	a : 0.01	h : 0.01	i : 0.01	
e : 0.29	c : 0.20	d : 0.11	g : 0.07	" : 0.07	! : 0.05	$ : 0.03	# : 0.03	b : 0.03	= : 0.01	[ : 0.01	f : 0.01	i : 0.01	
e : 0.22	c : 0.16	" : 0.11	d : 0.09	[ : 0.07	g : 0.05	b : 0.05	# : 0.05	! : 0.05	a : 0.03	$ : 0.03	f : 0.01	i : 0.01	
! : 0.18	e : 0.16	c : 0.14	[ : 0.11	" : 0.09	g : 0.05	a : 0.05	# : 0.05	d : 0.03	$ : 0.03	b : 0.01	f : 0.01	i : 0.01	
! : 0.29	d : 0.25	[ : 0.14	c : 0.07	e : 0.05	# : 0.05	g : 0.03	" : 0.03	$ : 0.01	i : 0.01	
c : 0.31	d : 0.31	! : 0.14	b : 0.07	[ : 0.03	e : 0.03	$ : 0.01	g : 0.01	i : 0.01	# : 0.01	
c : 0.35	d : 0.31	b : 0.25	o : 0.03	g : 0.01	i : 0.01	
c : 0.35	d : 0.29	b : 0.18	o : 0.11	m : 0.01	g : 0.01	i : 0.01	
m : 0.74	o : 0.11	c : 0.09	d : 0.05	
m : 0.74	l : 0.14	o : 0.11	
m : 0.74	l : 0.14	o : 0.11	
m : 0.72	l : 0.14	o : 0.11	d : 0.01	
c : 0.38	d : 0.31	b : 0.18	o : 0.07	g : 0.01	i : 0.01	
c : 0.38	d : 0.31	b : 0.25	g : 0.01	i : 0.01	
c : 0.38	d : 0.31	2 : 0.09	b : 0.07	] : 0.03	4 : 0.01	g : 0.01	e : 0.01	3 : 0.01	i : 0.01	
2 : 0.29	d : 0.29	] : 0.14	3 : 0.07	e : 0.05	g : 0.03	4 : 0.03	= : 0.01	c : 0.01	i : 0.01	
2 : 0.25	3 : 0.14	] : 0.14	e : 0.11	c : 0.09	g : 0.05	4 : 0.05	d : 0.03	= : 0.01	b : 0.01	a : 0.01	f : 0.01	i : 0.01	
c : 0.20	e : 0.20	3 : 0.12	d : 0.09	a : 0.07	g : 0.05	b : 0.05	2 : 0.05	4 : 0.05	= : 0.01	] : 0.01	f : 0.01	i : 0.01	
e : 0.27	c : 0.22	d : 0.14	g : 0.07	] : 0.07	3 : 0.07	4 : 0.03	b : 0.03	= : 0.01	f : 0.01	i : 0.01	
e : 0.29	c : 0.22	d : 0.16	] : 0.11	g : 0.05	f : 0.03	= : 0.01	b : 0.01	4 : 0.01	a : 0.01	h : 0.01	i : 0.01	
e : 0.33	d : 0.14	f : 0.11	c : 0.11	2 : 0.05	g : 0.05	] : 0.05	h : 0.03	= : 0.01	b : 0.01	3 : 0.01	i : 0.01	a : 0.01	
e : 0.33	f : 0.16	] : 0.09	d : 0.09	2 : 0.07	c : 0.07	g : 0.05	h : 0.03	= : 0.01	3 : 0.01	a : 0.01	b : 0.01	
e : 0.31	f : 0.16	] : 0.11	2 : 0.11	d : 0.09	b : 0.03	g : 0.03	a : 0.03	h : 0.03	= : 0.01	c : 0.01	3 : 0.01	
e : 0.29	f : 0.18	2 : 0.12	d : 0.11	] : 0.07	c : 0.07	b : 0.03	h : 0.03	g : 0.03	= : 0.01	
e : 0.27	f : 0.22	c : 0.11	d : 0.09	b : 0.09	2 : 0.05	g : 0.05	] : 0.03	h : 0.03	= : 0.01	

#score	621.0489790915482
#seq	54
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_CDS_m1_run1.txt

#BEAR
c[a[eeeeeccc[ddddnnnnndddd22ccc]eeeeea]c	chr17:37899483-37899747(+)$1	264	16	56	13.3855
===========a!!cccooooooccc22a]==========	chr17:7228188-7228446(-)$1	258	142	182	21.5531
""==========!!cccmmmmccc==========333ccc	chr22:50354580-50354879(+)$1	299	234	274	17.3187
C:iiiiiiiiiddddcccnnnnnccc22dddd333iiiii	chr17:43473825-43474113(-)$1	288	230	270	13.8806
ccccc[eeeee[ccc[annnnna]ccc]eeeee]ccc22c	chr2:152266765-152267041(+)$1	276	1	41	13.6112
cciiiiiiiiibb[ddddlllddddbb333iiiiiiiiiJ	chr9:117063612-117063861(+)$1	249	48	88	14.0978
iii[eeeee!!ffffffooooooffffffeeeee22iiii	chr17:79827001-79827262(-)$1	261	94	134	13.6869
''eeeee!!bb"""cccooooooccc]bbeeeee4444cc	chrX:30718422-30718705(+)$1	283	138	178	14.2533
============!!a[cccmmmmccc22a22=========	chr14:103568756-103569068(+)$1	312	13	53	18.5173
ggggg!!==========oooooo==========22ggggg	chr6:33168922-33169147(+)$1	225	78	118	18.1800
=================mmmm==================A	chr3:53213691-53213981(+)$1	290	149	189	16.6781
$$==========!!ddddllldddd==========4444h	chr20:61449075-61449314(+)$1	239	94	134	16.7370
gggggg"""iiiiiiiiinnnnniiiiiiiiigggggggc	chr16:88801329-88801610(-)$1	281	75	115	15.1585
==========="""bb!!bbmmmmbb22bb4444======	chr1:40770302-40770577(-)$1	275	40	80	14.5825
=========cccddddllldddd]ccc4444=========	chr19:35540273-35540585(+)$1	312	101	141	14.9686
iiiiiiii"""eeeee[ccclllccc22eeeee333iiii	chr19:50365389-50365697(-)$1	308	172	212	15.9108
ffff[a[eeeee!!cccooooooccceeeee]a]ffffff	chr16:69419246-69419552(-)$1	306	242	282	14.1323
gggggccc[dddd[cccooooooccc]dddd]ccc22ggg	chr17:37901130-37901353(+)$1	223	91	131	15.2584
e!!bb[===========nnnnn===========22bb444	chr2:177134278-177134538(+)$1	260	175	215	15.2401
dd!!a!!==========ccclllccc22==========22	chr7:150773997-150774258(-)$1	261	72	112	16.6921
!ccc"""eeeeecccaooooooa]ccc]eeeee22ccc33	chr20:3172236-3172481(-)$1	245	124	164	15.0718
====####eeeee!!ddddllldddd22eeeee=======	chr16:3071395-3071665(+)$1	270	113	153	16.1484
##eeeee"""gggggggooooooggggggg]eeeeegggg	chr17:73897143-73897392(-)$1	249	85	125	14.3879
=============[a[ddddllldddd]a]==========	chr16:22335709-22335959(+)$1	250	67	107	17.8354
==========[bb!!ddddllldddd]bb]==========	chr12:57036221-57036518(-)$1	297	67	107	17.1266
c!!eeeee[ccc!!cccoooooocccccceeeee]ccc::	chr19:3206117-3206363(+)$1	246	204	244	13.8248
ggggg[ccc!!bb"""ccclllccc22bb]cccggggggg	chr6:33257955-33258226(+)$1	271	194	234	14.3093
[cccggggggg"""ccclllccc]ggggggg]ccc333gg	chr14:23299209-23299475(+)$1	266	131	171	14.4390
=======!!a[a"""bbnnnnnbb4444a]a22=======	chr2:97493532-97493828(+)$1	296	37	77	16.9423
iiiiiiii[dddd[bboooooobbdddd333iiiiiiiii	chr11:60669832-60670084(-)$1	252	168	208	15.7866
=========ccc[bb[cccmmmmccc22bb]ccc22====	chr17:1648520-1648768(+)$1	248	89	129	15.8831
h[bb[dddd[cccddddoooooodddd333cccdddd]bb	chr6:43268714-43268980(+)$1	266	80	120	12.8652
gggggg!!dddd!!eeeeellleeeee]dddd22gggggg	chr17:7132489-7132767(-)$1	278	93	133	12.6642
###dddd[accc!!aooooooa22ccc]a]dddd4444cc	chr17:73570091-73570353(+)$1	262	120	160	13.9276
"""eeeee!!ccc[ccclllccc]ccc4444eeeee333f	chr2:153515255-153515582(-)$1	327	40	80	13.9659
============!!cccnnnnnccc===============	chr17:7529792-7530067(-)$1	275	65	105	19.3745
[bb[==========ddddmmmmdddd]==========]bb	chr19:36302983-36303256(-)$1	273	81	121	15.5058
ggggggg[ccc####bboooooobb4444ccc]ggggggg	chr22:19467490-19467806(+)$1	316	120	160	16.0611
hhhhhccc[ccc[ccc[ccclllccc22ccc]ccc]ccc]	chr2:231902580-231902846(+)$1	266	163	203	13.6385
===========!!bb[aooooooabb22===========d	chr8:145737804-145738055(-)$1	251	176	216	19.5869
bbggggggg[a[cccrrrrrrrrrccc]a]ggggggg333	chr6:41558807-41559078(+)$1	271	91	131	13.8845
#bb!!a[ggggggg[cccnnnnnccc]ggggggga22bb4	chr18:657575-657870(+)$1	295	168	208	13.6574
""ccc"""eeeeebb[aooooooa]bb]eeeee333ccc3	chr19:18273071-18273319(+)$1	248	127	167	15.0114
=========$$$$$ddddmmmmdddd333==========:	chr16:29816275-29816549(+)$1	274	101	141	15.7993
=====hhhhhhhh[cccnnnnnccc333hhhhhhhh22==	chr16:2162854-2163127(-)$1	273	5	45	13.4843
ii[a!!a!!ddddrrrrrrrrrdddd22a22a]iiiiiii	chr20:43029843-43030143(+)$1	300	45	85	13.4153
gggg"""eeeee[bb[cccmmmmccc]bb]eeeee]gggg	chr16:16248536-16248839(-)$1	303	253	293	13.1288
=========[a[bb[bboooooobbbb]a]==========	chr17:43481768-43482019(-)$1	251	82	122	17.8297
h:ffffffdddd!!cccooooooccc22dddd22ffffff	chr20:62373384-62373621(+)$1	237	48	88	12.7634
eeee!!eeeee[ccc[annnnna]ccc]eeeee333eeee	chr6:31731023-31731328(+)$1	305	131	171	13.5955
a[bbddddccca[ddddoooooodddd]a]ccc4444ddd	chr3:30648368-30648688(+)$1	320	30	70	13.7837
!ccc[ccc[ccc"""ddddllldddd22ccc22ccc]ccc	chr5:176017074-176017360(+)$1	286	114	154	14.4711
iiiiiiiii!!ccc####ammmma4444ccciiiiiiiii	chr20:62320258-62320525(+)$1	267	5	45	15.7455

#otherMatches

#Seq PSSM
CCGCUUCGUCUUCCGGAAAAACUUCGCCAAGUACGAACUG	chr17:37899483-37899747(+)$1	264	16	56	13.3855
CUCAGUGCCACCGAUGACUUCAAUCACGGCGUGGUGCUGA	chr17:7228188-7228446(-)$1	258	142	182	21.5531
GCGCCGUGCUGGGUAGCGGCGGCUUCGGCACGGUCUACGC	chr22:50354580-50354879(+)$1	299	234	274	17.3187
CAGCAGUGCAUCCGCGCCGUCGAGGCCCGCGGUACGUGCG	chr17:43473825-43474113(-)$1	288	230	270	13.8806
UUCGCGCUGGGGUUUGGUGAUUCGGAGGCCUGGGGUGCAG	chr2:152266765-152267041(+)$1	276	1	41	13.6112
CCAGAGUUGGGCCAUGGCUCAGCCAGGUUCCCUAACUCUC	chr9:117063612-117063861(+)$1	249	48	88	14.0978
GGGCUGGGGCUGGGGUCCGGACCGACCUUCCCUGAUCCUC	chr17:79827001-79827262(-)$1	261	94	134	13.6869
UCUGGGGUAAGUUUCAUCACCAAGUGUCUCCCCAUCCCCA	chrX:30718422-30718705(+)$1	283	138	178	14.2533
CGCCGCGCCGCUGGCGCCAGCACUGGGAGGAGGCGGUGCG	chr14:103568756-103569068(+)$1	312	13	53	18.5173
CUCUGUCCCUCUGGUCAGCGUGAUGGCCAGAGGCCUGGGG	chr6:33168922-33169147(+)$1	225	78	118	18.1800
ugugugugcaugcgugcaugugugugcgugCACACACGCG	chr3:53213691-53213981(+)$1	290	149	189	16.6781
AGGGGUGGAGGGUGUCAUGUGGUGGUCCUCCACCCAGAAU	chr20:61449075-61449314(+)$1	239	94	134	16.7370
GUGGGCCAGAGGCGGGGGUUGCCCUCCUGCCUGCCCGCCC	chr16:88801329-88801610(-)$1	281	75	115	15.1585
AAUUUCUCCUUCCUCCAGGGAGAGCCAGGGCCUCGAGGAG	chr1:40770302-40770577(-)$1	275	40	80	14.5825
GCAGUGGCUGUUCUCCUCAGGAGUGACCAGGAGCCGCUGU	chr19:35540273-35540585(+)$1	312	101	141	14.9686
GCUCAGGGCCUCUCUGCCUCCCCGAGUCCAGGGCCCUCCU	chr19:50365389-50365697(-)$1	308	172	212	15.9108
AGAAGGGGAAAAUUUAGGUAUGGCUAUUUUUGUGUUCUUC	chr16:69419246-69419552(-)$1	306	242	282	14.1323
CUUCCGCCUCUUCAAGGUGAGACCCUGGGAGUGGCAUGGG	chr17:37901130-37901353(+)$1	223	91	131	15.2584
GGGGUACAGGGCUGGAGCUUUCCUCCAGCCUUGCGGCAUU	chr2:177134278-177134538(+)$1	260	175	215	15.2401
UAAAGGAGGCAGGGUGGGGGAGCCCUGGCCACCUUGCCCG	chr7:150773997-150774258(-)$1	261	72	112	16.6921
AGCAGAGAGGACCUGCCCUAAAGAUAGAGUCUUGAUGCAC	chr20:3172236-3172481(-)$1	245	124	164	15.0718
GGCUGGCCUGGAGAGGGGCGAGGUCUGACUCCGAGUCCCG	chr16:3071395-3071665(+)$1	270	113	153	16.1484
GUGGACGUUGCUACUCACUAGCUUGGGUGGGUGUCUGGGG	chr17:73897143-73897392(-)$1	249	85	125	14.3879
AGGGGAGGGGGCUGGCUGUGCCUCACGCUGGGCCCCCUCC	chr16:22335709-22335959(+)$1	250	67	107	17.8354
AGGGAAGGCUUGAGAGGACCUGGUUCAUCUGGCCUUUCUU	chr12:57036221-57036518(-)$1	297	67	107	17.1266
GCAGCUGGUGGACAAGGACAGCACCUUCCUCAGCACGCUG	chr19:3206117-3206363(+)$1	246	204	244	13.8248
UCCGGUGCUAGUCAAACAGGAGCUGGGGGAGGCUCGGGCC	chr6:33257955-33258226(+)$1	271	194	234	14.3093
CCUGGGGGACCAGAAGCUGGGCUAGGUCCUCACAGAUCUG	chr14:23299209-23299475(+)$1	266	131	171	14.4390
GGCUGGCCACACACCACUACCUGUACCAGCGCAGCCAGCC	chr2:97493532-97493828(+)$1	296	37	77	16.9423
UUGGGUGAGCUGGUGGGAAUGACCCCAGAGAUUAUUCAGA	chr11:60669832-60670084(-)$1	252	168	208	15.7866
CUUGCUCCUUUCCGCAGCUAACUAGCGGGCCGAACCAGGA	chr17:1648520-1648768(+)$1	248	89	129	15.8831
gagagccuguaguauguccaggaacaUGUGGCUUAGGGUC	chr6:43268714-43268980(+)$1	266	80	120	12.8652
GGGCGUGGGGAGGGCCUGGUCUCUAGGGUUCCGGGCGUCC	chr17:7132489-7132767(-)$1	278	93	133	12.6642
CAUCCUGACCUCAGUAAGGAGAGAGAGAGCCAGGCCGAGG	chr17:73570091-73570353(+)$1	262	120	160	13.9276
AUCCUUUUGUGCUACUCAGAGAGAAGUUAUAAAAAGUCAA	chr2:153515255-153515582(-)$1	327	40	80	13.9659
UUGAAAGAGGGAGUGAGAAAACCUUUUUCUUUUUUGACCC	chr17:7529792-7530067(-)$1	275	65	105	19.3745
GUGAGGCGUGGUAUGAGGGGAACCUCGGUGCUAUGCUGCG	chr19:36302983-36303256(-)$1	273	81	121	15.5058
GGUGACCGGGAGGCAGGGGAGGGCCGGGGUUCGGGUCGCC	chr22:19467490-19467806(+)$1	316	120	160	16.0611
CGGUGGCGCCGGGGCUGCGGCUGCUGGAGGCGCUGUUGCG	chr2:231902580-231902846(+)$1	266	163	203	13.6385
CCGUGGAGUUUGACAUGGUCAAGCUGGUGGACUCCAUGGG	chr8:145737804-145738055(-)$1	251	176	216	19.5869
CAGGGCUGUGACCCUUCGAGGCCCAGGCUGACGGUCCCUU	chr6:41558807-41559078(+)$1	271	91	131	13.8845
UGCCUGUGGCCGGCUCGGAGCUGCCGCGCCGGCCCUUGCC	chr18:657575-657870(+)$1	295	168	208	13.6574
AUGUUGGAUGUUCCCACAGGGAGGAGGUGAACGAGAAACU	chr19:18273071-18273319(+)$1	248	127	167	15.0114
GGGGCGGGGGAGACCGGGUACCCCCGAGACCCUGUCCCCU	chr16:29816275-29816549(+)$1	274	101	141	15.7993
ggcagggcggggGCGGGCUCCACCUUCACCUCUGCCUUCU	chr16:2162854-2163127(-)$1	273	5	45	13.4843
AGAGGACGGUUUGAAAGGAAGGCAGAGAGGGCACUGGGAG	chr20:43029843-43030143(+)$1	300	45	85	13.4153
GGCUAUCUGGGCAGCCCUGGAGACGGUGCAGCUCAAAGCC	chr16:16248536-16248839(-)$1	303	253	293	13.1288
GGAGAGAGGAAGAGAUCAUAUACGACUGUGUCUUUCUCCC	chr17:43481768-43482019(-)$1	251	82	122	17.8297
GGAGGGGCGGGUGUGGCGGCUGAGCCUGACCCUGGCCCCU	chr20:62373384-62373621(+)$1	237	48	88	12.7634
UGGCGUGAGAGUCAGCCUCUGUGAUUGCCUUUCCCAGCUA	chr6:31731023-31731328(+)$1	305	131	171	13.5955
CCUGUGGCCGCUGCACAUCGUCCUGUGGACGCGUAUCGCC	chr3:30648368-30648688(+)$1	320	30	70	13.7837
GCGGUAGCAGGAGGGGCCUGCUGGGUGAUCCAGGCUCCUG	chr5:176017074-176017360(+)$1	286	114	154	14.4711
GCCAGGAAGAAGCUUCCAGAACCCGAUUGGCCUUCCUGGC	chr20:62320258-62320525(+)$1	267	5	45	15.7455

#DB
(.(.((((((((.((((.....))))..))).)))))).)	chr17:37899483-37899747(+)$1	1	16	56	13.3855
((((((((((((..(((......)))..).))))))))))	chr17:7228188-7228446(-)$1	1	142	182	21.5531
..((((((((((..(((....)))))))))))))...)))	chr22:50354580-50354879(+)$1	1	234	274	17.3187
).((((((((((((((((.....)))..))))...)))))	chr17:43473825-43474113(-)$1	1	230	270	13.8806
(((((.(((((.(((.(.....).))).))))).)))..)	chr2:152266765-152267041(+)$1	1	1	41	13.6112
))(((((((((((.((((...))))))...))))))))))	chr9:117063612-117063861(+)$1	1	48	88	14.0978
(((.(((((..((((((......)))))))))))..))))	chr17:79827001-79827262(-)$1	1	94	134	13.6869
..(((((..((...(((......))).)))))))....))	chrX:30718422-30718705(+)$1	1	138	178	14.2533
((((((((((((..(.(((....)))..)..)))))))))	chr14:103568756-103569068(+)$1	1	13	53	18.5173
(((((..((((((((((......))))))))))..)))))	chr6:33168922-33169147(+)$1	1	78	118	18.1800
(((((((((((((((((....)))))))))))))))))))	chr3:53213691-53213981(+)$1	1	149	189	16.6781
..((((((((((..((((...))))))))))))))....)	chr20:61449075-61449314(+)$1	1	94	134	16.7370
((((((...(((((((((.....))))))))))))))))(	chr16:88801329-88801610(-)$1	1	75	115	15.1585
(((((((((((...((..((....))..))....))))))	chr1:40770302-40770577(-)$1	1	40	80	14.5825
((((((((((((((((...)))).)))....)))))))))	chr19:35540273-35540585(+)$1	1	101	141	14.9686
((((((((...(((((.(((...)))..)))))...))))	chr19:50365389-50365697(-)$1	1	172	212	15.9108
((((.(.(((((..(((......)))))))).).))))))	chr16:69419246-69419552(-)$1	1	242	282	14.1323
((((((((.((((.(((......))).)))).)))..)))	chr17:37901130-37901353(+)$1	1	91	131	15.2584
(..((.(((((((((((.....)))))))))))..))...	chr2:177134278-177134538(+)$1	1	175	215	15.2401
((..(..(((((((((((((...)))..))))))))))..	chr7:150773997-150774258(-)$1	1	72	112	16.6921
.(((...(((((((((......).))).)))))..)))..	chr20:3172236-3172481(-)$1	1	124	164	15.0718
((((....(((((..((((...))))..))))))))))))	chr16:3071395-3071665(+)$1	1	113	153	16.1484
..(((((...(((((((......))))))).)))))))))	chr17:73897143-73897392(-)$1	1	85	125	14.3879
(((((((((((((.(.((((...)))).).))))))))))	chr16:22335709-22335959(+)$1	1	67	107	17.8354
((((((((((.((..((((...)))).)).))))))))))	chr12:57036221-57036518(-)$1	1	67	107	17.1266
(..(((((.(((..(((......))))))))))).)))..	chr19:3206117-3206363(+)$1	1	204	244	13.8248
(((((.(((..((...(((...)))..)).))))))))))	chr6:33257955-33258226(+)$1	1	194	234	14.3093
.((((((((((...(((...))).))))))).)))...))	chr14:23299209-23299475(+)$1	1	131	171	14.4390
(((((((..(.(...((.....))....).)..)))))))	chr2:97493532-97493828(+)$1	1	37	77	16.9423
((((((((.((((.((......))))))...)))))))))	chr11:60669832-60670084(-)$1	1	168	208	15.7866
((((((((((((.((.(((....)))..)).)))..))))	chr17:1648520-1648768(+)$1	1	89	129	15.8831
(.((.((((.(((((((......))))...))))))).))	chr6:43268714-43268980(+)$1	1	80	120	12.8652
((((((..((((..(((((...))))).))))..))))))	chr17:7132489-7132767(-)$1	1	93	133	12.6642
...((((.((((..(......)..))).).))))....))	chr17:73570091-73570353(+)$1	1	120	160	13.9276
...(((((..(((.(((...))).)))....)))))...)	chr2:153515255-153515582(-)$1	1	40	80	13.9659
((((((((((((..(((.....))))))))))))))))))	chr17:7529792-7530067(-)$1	1	65	105	19.3745
.((.((((((((((((((....)))).)))))))))).))	chr19:36302983-36303256(-)$1	1	81	121	15.5058
(((((((.(((....((......))....))).)))))))	chr22:19467490-19467806(+)$1	1	120	160	16.0611
((((((((.(((.(((.(((...)))..))).))).))).	chr2:231902580-231902846(+)$1	1	163	203	13.6385
(((((((((((..((.(......)))..))))))))))))	chr8:145737804-145738055(-)$1	1	176	216	19.5869
(((((((((.(.(((.........))).).)))))))...	chr6:41558807-41559078(+)$1	1	91	131	13.8845
.((..(.(((((((.(((.....))).))))))))..)).	chr18:657575-657870(+)$1	1	168	208	13.6574
..(((...(((((((.(......).)).)))))...))).	chr19:18273071-18273319(+)$1	1	127	167	15.0114
(((((((((.....((((....))))...)))))))))).	chr16:29816275-29816549(+)$1	1	101	141	15.7993
(((((((((((((.(((.....)))...))))))))..))	chr16:2162854-2163127(-)$1	1	5	45	13.4843
((.(..(..((((.........))))..)..).)))))))	chr20:43029843-43030143(+)$1	1	45	85	13.4153
((((...(((((.((.(((....))).)).))))).))))	chr16:16248536-16248839(-)$1	1	253	293	13.1288
(((((((((.(.((.((......)))).).))))))))))	chr17:43481768-43482019(-)$1	1	82	122	17.8297
).((((((((((..(((......)))..))))..))))))	chr20:62373384-62373621(+)$1	1	48	88	12.7634
((((..(((((.(((.(.....).))).)))))...))))	chr6:31731023-31731328(+)$1	1	131	171	13.5955
(.((((((((((.((((......)))).).)))....)))	chr3:30648368-30648688(+)$1	1	30	70	13.7837
.(((.(((.(((...((((...))))..)))..))).)))	chr5:176017074-176017360(+)$1	1	114	154	14.4711
(((((((((..(((....(....)....))))))))))))	chr20:62320258-62320525(+)$1	1	5	45	15.7455

#PSSM
= : 0.28	g : 0.13	i : 0.09	c : 0.07	" : 0.05	# : 0.05	h : 0.05	e : 0.03	! : 0.03	[ : 0.03	C : 0.01	' : 0.01	$ : 0.01	f : 0.01	d : 0.01	b : 0.01	a : 0.01	
= : 0.28	g : 0.13	c : 0.09	i : 0.09	[ : 0.05	" : 0.05	b : 0.05	: : 0.03	! : 0.03	# : 0.03	' : 0.01	$ : 0.01	f : 0.01	d : 0.01	h : 0.01	e : 0.01	
= : 0.32	g : 0.15	i : 0.11	c : 0.09	b : 0.07	e : 0.05	! : 0.05	f : 0.03	a : 0.01	# : 0.01	" : 0.01	h : 0.01	[ : 0.01	
= : 0.32	g : 0.15	i : 0.09	c : 0.09	e : 0.09	[ : 0.05	b : 0.05	f : 0.03	! : 0.03	d : 0.01	h : 0.01	a : 0.01	
= : 0.32	g : 0.15	e : 0.11	i : 0.09	[ : 0.05	! : 0.05	c : 0.03	" : 0.03	d : 0.03	b : 0.01	a : 0.01	# : 0.01	h : 0.01	f : 0.01	
= : 0.30	e : 0.11	i : 0.09	g : 0.09	! : 0.07	[ : 0.05	c : 0.05	" : 0.05	d : 0.05	a : 0.03	# : 0.01	h : 0.01	f : 0.01	
= : 0.32	e : 0.15	i : 0.09	" : 0.07	c : 0.07	! : 0.05	g : 0.05	d : 0.05	[ : 0.03	# : 0.01	h : 0.01	a : 0.01	f : 0.01	
= : 0.33	e : 0.16	i : 0.09	! : 0.07	c : 0.07	" : 0.05	g : 0.05	d : 0.03	[ : 0.03	# : 0.01	h : 0.01	f : 0.01	
= : 0.33	e : 0.16	[ : 0.09	! : 0.07	i : 0.05	" : 0.05	c : 0.05	g : 0.05	d : 0.05	a : 0.01	h : 0.01	
= : 0.26	c : 0.16	e : 0.13	d : 0.09	! : 0.07	i : 0.05	[ : 0.05	" : 0.03	g : 0.03	b : 0.01	a : 0.01	$ : 0.01	h : 0.01	
= : 0.24	c : 0.20	e : 0.13	d : 0.09	i : 0.05	! : 0.05	g : 0.05	[ : 0.03	a : 0.03	b : 0.01	" : 0.01	$ : 0.01	h : 0.01	
c : 0.18	= : 0.18	d : 0.11	e : 0.11	[ : 0.07	a : 0.05	b : 0.05	" : 0.05	g : 0.03	f : 0.01	i : 0.01	# : 0.01	! : 0.01	$ : 0.01	h : 0.01	
! : 0.20	c : 0.13	= : 0.11	[ : 0.09	d : 0.09	" : 0.09	b : 0.07	e : 0.05	g : 0.03	f : 0.01	i : 0.01	# : 0.01	$ : 0.01	h : 0.01	
! : 0.22	c : 0.11	[ : 0.11	" : 0.11	d : 0.09	= : 0.09	b : 0.09	g : 0.03	f : 0.01	i : 0.01	e : 0.01	# : 0.01	$ : 0.01	r : 0.01	
c : 0.30	d : 0.16	b : 0.11	= : 0.07	a : 0.05	" : 0.05	e : 0.03	! : 0.03	# : 0.03	[ : 0.03	f : 0.01	i : 0.01	g : 0.01	r : 0.01	
c : 0.26	d : 0.20	[ : 0.15	b : 0.09	= : 0.07	e : 0.03	r : 0.03	f : 0.01	i : 0.01	a : 0.01	g : 0.01	" : 0.01	o : 0.01	# : 0.01	
c : 0.32	d : 0.20	a : 0.07	= : 0.07	o : 0.05	b : 0.05	[ : 0.03	r : 0.03	f : 0.01	i : 0.01	! : 0.01	l : 0.01	g : 0.01	e : 0.01	# : 0.01	
o : 0.33	c : 0.16	d : 0.15	n : 0.13	l : 0.05	m : 0.03	r : 0.03	i : 0.01	! : 0.01	e : 0.01	# : 0.01	
o : 0.33	n : 0.18	c : 0.13	l : 0.09	m : 0.07	d : 0.07	r : 0.03	b : 0.01	e : 0.01	a : 0.01	
o : 0.33	n : 0.18	l : 0.16	m : 0.15	c : 0.05	d : 0.03	r : 0.03	b : 0.01	
o : 0.33	l : 0.20	n : 0.18	m : 0.16	c : 0.03	r : 0.03	d : 0.01	
o : 0.32	n : 0.18	l : 0.16	m : 0.13	c : 0.05	d : 0.05	r : 0.03	= : 0.01	a : 0.01	
o : 0.28	d : 0.18	c : 0.11	m : 0.09	l : 0.07	n : 0.05	a : 0.05	= : 0.03	b : 0.03	e : 0.01	2 : 0.01	r : 0.01	
c : 0.33	d : 0.22	] : 0.11	b : 0.07	= : 0.05	a : 0.05	f : 0.01	i : 0.01	m : 0.01	g : 0.01	e : 0.01	2 : 0.01	r : 0.01	
c : 0.45	d : 0.24	= : 0.07	b : 0.07	g : 0.03	4 : 0.03	f : 0.01	i : 0.01	e : 0.01	] : 0.01	
c : 0.39	d : 0.20	= : 0.11	b : 0.09	4 : 0.05	g : 0.03	f : 0.01	i : 0.01	2 : 0.01	e : 0.01	3 : 0.01	
2 : 0.28	c : 0.15	= : 0.11	] : 0.11	d : 0.07	b : 0.05	4 : 0.05	e : 0.03	g : 0.03	3 : 0.03	f : 0.01	i : 0.01	
2 : 0.26	] : 0.18	= : 0.13	4 : 0.09	3 : 0.07	b : 0.07	g : 0.05	d : 0.03	f : 0.01	i : 0.01	e : 0.01	c : 0.01	
a : 0.16	= : 0.16	e : 0.13	b : 0.11	c : 0.09	d : 0.07	3 : 0.07	4 : 0.05	g : 0.05	f : 0.01	i : 0.01	h : 0.01	
] : 0.18	= : 0.18	e : 0.18	c : 0.09	d : 0.07	3 : 0.05	g : 0.05	2 : 0.03	b : 0.03	4 : 0.03	i : 0.01	h : 0.01	
= : 0.26	e : 0.20	c : 0.15	d : 0.09	4 : 0.05	g : 0.05	i : 0.03	2 : 0.03	] : 0.03	a : 0.01	3 : 0.01	h : 0.01	
= : 0.30	e : 0.22	] : 0.09	c : 0.09	d : 0.07	i : 0.07	2 : 0.03	g : 0.03	4 : 0.01	h : 0.01	a : 0.01	
= : 0.30	e : 0.24	c : 0.13	2 : 0.07	i : 0.05	g : 0.05	] : 0.03	3 : 0.01	4 : 0.01	a : 0.01	d : 0.01	h : 0.01	
= : 0.30	e : 0.13	2 : 0.09	g : 0.09	c : 0.09	3 : 0.07	i : 0.07	] : 0.03	4 : 0.03	d : 0.03	h : 0.01	
= : 0.30	3 : 0.09	c : 0.09	2 : 0.09	g : 0.09	e : 0.07	i : 0.07	4 : 0.05	f : 0.03	] : 0.01	d : 0.01	a : 0.01	h : 0.01	
= : 0.28	g : 0.11	3 : 0.09	i : 0.09	c : 0.07	2 : 0.07	4 : 0.07	e : 0.05	f : 0.03	] : 0.03	b : 0.01	d : 0.01	h : 0.01	
= : 0.30	g : 0.15	i : 0.13	c : 0.09	4 : 0.07	3 : 0.05	2 : 0.05	e : 0.03	f : 0.03	b : 0.01	d : 0.01	] : 0.01	
= : 0.28	g : 0.15	i : 0.13	c : 0.11	4 : 0.07	3 : 0.05	2 : 0.03	f : 0.03	] : 0.03	a : 0.01	b : 0.01	e : 0.01	d : 0.01	
= : 0.28	g : 0.16	i : 0.13	c : 0.11	3 : 0.05	b : 0.05	2 : 0.03	4 : 0.03	f : 0.03	] : 0.01	: : 0.01	e : 0.01	d : 0.01	
= : 0.22	g : 0.15	c : 0.13	i : 0.11	f : 0.05	3 : 0.05	4 : 0.03	: : 0.03	b : 0.03	d : 0.03	J : 0.01	A : 0.01	h : 0.01	2 : 0.01	] : 0.01	e : 0.01	

#score	809.760292407705
#seq	53
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_transcript_m3_run2.txt

#BEAR
iiiiiiii[bbtttttttttttbbiiiiii	chr17:80848664-80848934(+)$1	270	24	54	24.4222
fffccc!!ccctttttttttttccc22ccc	chr22:50033457-50033708(-)$1	251	5	35	23.5837
iiiii!!ddddtttttttttttddddiiii	chr5:21482668-21482945(+)$1	277	147	177	24.4845
b==========ssssssssss=========	chr16:81527522-81527785(+)$1	263	56	86	17.8834
$$gggggggwwwwwwwwwwwwwwggggggg	chr2:236431265-236431521(+)$1	256	96	126	23.2118
[a"""fffffftttttttttttffffff55	chr2:236445998-236446278(+)$1	280	56	86	22.7012
a"""gggggggssssssssssggggggga]	chr19:34876802-34877025(+)$1	223	148	178	18.0727
e!!hhhhhhhhttttttttttthhhhhhhh	chr2:236437988-236438256(+)$1	268	34	64	22.2884
+++++fffffftttttttttttffffff]=	chr19:34882930-34883174(+)$1	244	137	167	20.7254
ggggffffff[assssssssssa]ffffff	chr19:2270970-2271262(+)$1	292	119	149	17.4561
fffff!!ddddwwwwwwwwwwwwwwdddd2	chr19:1035128-1035427(+)$1	299	169	199	20.6455
!ccc[ffffffuuuuuuuuuuuuffffff]	chr16:89476915-89477155(-)$1	240	11	41	24.0200
c!!bb[eeeeettttttttttteeeee]bb	chr16:89498192-89498455(-)$1	263	25	55	22.9549
iiiiiiii[auuuuuuuuuuuua]iiiiii	chr3:128211364-128211618(+)$1	254	47	77	25.2536
!!bb[ccc[bbvvvvvvvvvvvvvbbccc2	chr22:19338092-19338375(-)$1	283	181	211	22.5851
dd[hhhhhhhhttttttttttthhhhhhhh	chr7:1883723-1884037(-)$1	314	168	198	21.8252
f!!ffffff[attttttttttta]ffffff	chr19:59057371-59057630(+)$1	259	201	231	24.3002
gggggcccyyyyyyyyyyyyyyyyccc22g	chr5:6724702-6724970(+)$1	268	198	228	21.8337
"""a[fffffftttttttttttffffffa3	chr3:52517467-52517775(+)$1	308	24	54	24.4957
[ccc[ccccccvvvvvvvvvvvvvccc]cc	chr16:31198355-31198603(+)$1	248	90	120	23.7647
ddd[gggggggtttttttttttggggggg]	chr22:23558825-23559109(+)$1	284	7	37	24.1712
!!bb[ddddvvvvvvvvvvvvvddddbb22	chr22:49956549-49956773(-)$1	224	148	178	21.9930
####eeeeewwwwwwwwwwwwwweeeee44	chr13:114243482-114243751(+)$1	269	188	218	22.5600
bb[ffffff[assssssssssa]ffffff]	chr19:879106-879442(-)$1	336	184	214	17.4547
bb[gggggggvvvvvvvvvvvvvggggggg	chr1:893806-894101(-)$1	295	237	267	24.1429
[ccc[eeeeevvvvvvvvvvvvveeeee]c	chr16:81524592-81524841(+)$1	249	12	42	23.4273
cc"""cccyyyyyyyyyyyyyyyyccc22c	chr16:31197672-31197912(+)$1	240	133	163	21.9274
::hhhhhhhhuuuuuuuuuuuuhhhhhhhh	chr17:80419979-80420282(+)$1	303	117	147	20.1230
FFFF:ffffffvvvvvvvvvvvvvffffff	chr22:49910373-49910679(-)$1	306	234	264	19.4428
"""ffffffwwwwwwwwwwwwwwffffff3	chr17:80877731-80878007(+)$1	276	139	169	22.8986
""gggggggwwwwwwwwwwwwwwggggggg	chr7:153097650-153097919(-)$1	269	154	184	23.6780
fff!!a!!ccctttttttttttccc22a22	chr6:7125714-7125956(+)$1	242	72	102	23.7255
d[ccc[dddduuuuuuuuuuuudddd]ccc	chr21:45164013-45164274(+)$1	261	85	115	23.5011
hhhhhhhh!!auuuuuuuuuuuua22hhhh	chr20:57467541-57467796(+)$1	255	83	113	22.2788
dddddd[dddduuuuuuuuuuuudddd333	chr1:22081074-22081421(-)$1	347	279	309	22.8558
cc[hhhhhhhhttttttttttthhhhhhhh	chr16:89483731-89483998(-)$1	267	22	52	22.1891
iiiii!!ddddtttttttttttdddd]iii	chr11:66391151-66391383(+)$1	232	23	53	24.4485
b[ccc[bbwwwwwwwwwwwwwwbb]ccc]b	chr7:120797389-120797665(+)$1	276	1	31	20.7960
gggggggyyyyyyyyyyyyyyyyggggggg	chr11:66391277-66391538(+)$1	261	89	119	22.0110
===========ssssssssss=========	chr16:89477796-89478073(-)$1	277	124	154	18.1102
ggg]ccceeeeeuuuuuuuuuuuueeeee:	chr16:89433340-89433639(-)$1	299	268	298	20.0258
bbeeeeeddddtttttttttttdddd4444	chrX:13333353-13333624(+)$1	271	122	152	22.6284
[ccc[ccccccvvvvvvvvvvvvvccc]cc	chr16:31198403-31198667(+)$1	264	42	72	23.7647
bb!!dddd[auuuuuuuuuuuua]dddd22	chr2:97558351-97558631(-)$1	280	147	177	23.4169
==ffffff[bbtttttttttttbbffffff	chr10:126804867-126805128(-)$1	261	153	183	23.0476
####cccddddtttttttttttdddd]ccc	chr22:49945661-49945910(-)$1	249	23	53	24.2321
ebb####dddduuuuuuuuuuuudddd555	chr16:89477502-89477764(-)$1	262	74	104	20.6556
==========vvvvvvvvvvvvv=======	chr22:19840540-19840791(-)$1	251	82	112	24.7095
e"""bb[cccuuuuuuuuuuuuccc]bb44	chr17:80851102-80851369(+)$1	267	53	83	23.6344
ffffffeeeeeuuuuuuuuuuuueeeee]f	chr19:34882773-34883025(+)$1	252	3	33	22.8961
ccc"""dddduuuuuuuuuuuuddddccc]	chr2:97559160-97559438(-)$1	278	73	103	23.6751

#otherMatches

#Seq PSSM
CCUGGGUGUGCAGACAGCAAGAGCCGCCCA	chr17:80848664-80848934(+)$1	270	24	54	24.4222
GCUGGCCUCUGCCUCCUCCCUUUAGUUGCC	chr22:50033457-50033708(-)$1	251	5	35	23.5837
GACAGCCUGAGCUCCGUCCUCACUCACUGU	chr5:21482668-21482945(+)$1	277	147	177	24.4845
CGUUUUUUUAAAAUCUCUUAAUUAAAAAAA	chr16:81527522-81527785(+)$1	263	56	86	17.8834
AGCAAGAUGGGAGUAAGGGAGGAUGUCUUG	chr2:236431265-236431521(+)$1	256	96	126	23.2118
GCGGGGAGGCCAGGUGGUGUGGGGCCUCAU	chr2:236445998-236446278(+)$1	280	56	86	22.7012
GUAUGGUCUGAGGAGCCAGGGUCAGACUCA	chr19:34876802-34877025(+)$1	223	148	178	18.0727
UCAUUGCCAUUGUAAGGAUUAAAGUGGCAA	chr2:236437988-236438256(+)$1	268	34	64	22.2884
GAAGAUCUCAGUCUGUCAAUUUCUGAGGAG	chr19:34882930-34883174(+)$1	244	137	167	20.7254
CGGCGGGGCUGCGUGAGGGGAAGGGGCCCC	chr19:2270970-2271262(+)$1	292	119	149	17.4561
ACAGCAAGGUCUUGACAUUGGAAUUGGCUG	chr19:1035128-1035427(+)$1	299	169	199	20.6455
CCAAGGAUGCUUUCAUAGCUUUUGGUAUCG	chr16:89476915-89477155(-)$1	240	11	41	24.0200
AGAGCGGUUGCAGUAGGGAGGAGUGACAGU	chr16:89498192-89498455(-)$1	263	25	55	22.9549
GAUUGGGGGCGGCCGAGACAAAGGCCCCAG	chr3:128211364-128211618(+)$1	254	47	77	25.2536
UGUCAUGAACUAaaauagaaaaacagucag	chr22:19338092-19338375(-)$1	283	181	211	22.5851
GCAGAGGGUCGUGGGAAAGUGUUGACCCUC	chr7:1883723-1884037(-)$1	314	168	198	21.8252
CAGGGAAAGGCAUGGUGUGAAGGGCUUUCU	chr19:59057371-59057630(+)$1	259	201	231	24.3002
UGGUGUACAGUCCUAGCCACAGUAGUAAUC	chr5:6724702-6724970(+)$1	268	198	228	21.8337
GAGGUGAUCUGAGGUGGAGUAACAGGUCCA	chr3:52517467-52517775(+)$1	308	24	54	24.4957
ACCAUCAUCAUGAGAAACUGGAGAGUGCGU	chr16:31198355-31198603(+)$1	248	90	120	23.7647
cagugccaucuggcuugguaugaggugguu	chr22:23558825-23559109(+)$1	284	7	37	24.1712
GACAAUCAUAgugaugauggagaugaugga	chr22:49956549-49956773(-)$1	224	148	178	21.9930
CAUGGAUCACUUACAGAAAUUUAUGAUCAA	chr13:114243482-114243751(+)$1	269	188	218	22.5600
AGGCGAGCUGCUGGGGCAUGUGGGGCUCGG	chr19:879106-879442(-)$1	336	184	214	17.4547
ugaggucaggaauucgagaccagccugacc	chr1:893806-894101(-)$1	295	237	267	24.1429
GGAGGGGUCGAGAUUUGAACUGGUGACUGC	chr16:81524592-81524841(+)$1	249	12	42	23.4273
GACAAGAGGAAAAAAAAACAUCUGCUCCAU	chr16:31197672-31197912(+)$1	240	133	163	21.9274
GGACCCUGAAGAGUGGUCAGAAUUCAGGGU	chr17:80419979-80420282(+)$1	303	117	147	20.1230
UGACUGUCCCUGAGUAAAAUGGAAAGGGGC	chr22:49910373-49910679(-)$1	306	234	264	19.4428
UAGAGCAGUGUGUGGCCGUGGGAGCUGCUG	chr17:80877731-80878007(+)$1	276	139	169	22.8986
GAUUGAGACAAAGGGCUGAAGAGGUCUCAG	chr7:153097650-153097919(-)$1	269	154	184	23.6780
ACUCUAAGCUCUAUAAGCAUUUGGGAAUUU	chr6:7125714-7125956(+)$1	242	72	102	23.7255
UAGGGAGUGGGGGGAGGGAGGGUCACACCC	chr21:45164013-45164274(+)$1	261	85	115	23.5011
GGCGGCGAGGGGAGGAGGGAGGGCGGUUGC	chr20:57467541-57467796(+)$1	255	83	113	22.2788
agcaggcuggugacagaggcacaaccaaac	chr1:22081074-22081421(-)$1	347	279	309	22.8558
CCCUGACUCCUUGCCUCCUCCUGGGAGUCA	chr16:89483731-89483998(-)$1	267	22	52	22.1891
CUCUCUUGCCUUAAUUGGACAUGGGCUGAG	chr11:66391151-66391383(+)$1	232	23	53	24.4485
GGGCAGUCAUAAGAAAGGGGUCGAGUGCAC	chr7:120797389-120797665(+)$1	276	1	31	20.7960
UACAGGAGAUGUGAAGAUUUUUAUCCUGUG	chr11:66391277-66391538(+)$1	261	89	119	22.0110
cucaggagguugagguaggaggaucucuug	chr16:89477796-89478073(-)$1	277	124	154	18.1102
ccugugggucugucuuuguacaaccagauu	chr16:89433340-89433639(-)$1	299	268	298	20.0258
CUGGCCAGGGAAAAAUAGUGUGUCCUACAA	chrX:13333353-13333624(+)$1	271	122	152	22.6284
ACCAUCAUCAUGAGAAACUGGAGAGUGCGU	chr16:31198403-31198667(+)$1	264	42	72	23.7647
AGUGGUGAGAGAGAGGAAAGAGUGUCACGU	chr2:97558351-97558631(-)$1	280	147	177	23.4169
UGUGACGGGCCCAUUUUGAGAAGGCCGUCA	chr10:126804867-126805128(-)$1	261	153	183	23.0476
AUCUGUCCCUUAAUACACACAAAAGGAGAC	chr22:49945661-49945910(-)$1	249	23	53	24.2321
GCUGCAAGUUUGAAAGAGAAGUAGAGCAAA	chr16:89477502-89477764(-)$1	262	74	104	20.6556
AGGUGGUGUUUGUGGGUGGGGGUGGCAUUG	chr22:19840540-19840791(-)$1	251	82	112	24.7095
GGAAAUGUUUGAGUUGUUUGAAAAAGAUGA	chr17:80851102-80851369(+)$1	267	53	83	23.6344
CUGGGUCUGUCAAUGUCUGAGGAGGCAGUA	chr19:34882773-34883025(+)$1	252	3	33	22.8961
CUUACAGCAUGGUUUAGGGAGGAUGCAGGA	chr2:97559160-97559438(-)$1	278	73	103	23.6751

#DB
((((((((.((...........))))))))	chr17:80848664-80848934(+)$1	1	24	54	24.4222
((((((..(((...........)))..)))	chr22:50033457-50033708(-)$1	1	5	35	23.5837
(((((..((((...........))))))))	chr5:21482668-21482945(+)$1	1	147	177	24.4845
)((((((((((..........)))))))))	chr16:81527522-81527785(+)$1	1	56	86	17.8834
..(((((((..............)))))))	chr2:236431265-236431521(+)$1	1	96	126	23.2118
.(...((((((...........))))))..	chr2:236445998-236446278(+)$1	1	56	86	22.7012
(...(((((((..........)))))))).	chr19:34876802-34877025(+)$1	1	148	178	18.0727
(..((((((((...........))))))))	chr2:236437988-236438256(+)$1	1	34	64	22.2884
.....((((((...........)))))).)	chr19:34882930-34883174(+)$1	1	137	167	20.7254
))))((((((.(..........).))))))	chr19:2270970-2271262(+)$1	1	119	149	17.4561
(((((..((((..............)))).	chr19:1035128-1035427(+)$1	1	169	199	20.6455
.(((.((((((............)))))).	chr16:89476915-89477155(-)$1	1	11	41	24.0200
(..((.(((((...........))))).))	chr16:89498192-89498455(-)$1	1	25	55	22.9549
((((((((.(............).))))))	chr3:128211364-128211618(+)$1	1	47	77	25.2536
..((.(((.((.............))))).	chr22:19338092-19338375(-)$1	1	181	211	22.5851
((.((((((((...........))))))))	chr7:1883723-1884037(-)$1	1	168	198	21.8252
(..((((((.(...........).))))))	chr19:59057371-59057630(+)$1	1	201	231	24.3002
((((((((................)))..)	chr5:6724702-6724970(+)$1	1	198	228	21.8337
...(.((((((...........))))))).	chr3:52517467-52517775(+)$1	1	24	54	24.4957
.(((.((((((.............))).))	chr16:31198355-31198603(+)$1	1	90	120	23.7647
(((.(((((((...........))))))).	chr22:23558825-23559109(+)$1	1	7	37	24.1712
..((.((((.............))))))..	chr22:49956549-49956773(-)$1	1	148	178	21.9930
....(((((..............)))))..	chr13:114243482-114243751(+)$1	1	188	218	22.5600
((.((((((.(..........).)))))).	chr19:879106-879442(-)$1	1	184	214	17.4547
((.(((((((.............)))))))	chr1:893806-894101(-)$1	1	237	267	24.1429
.(((.(((((.............))))).)	chr16:81524592-81524841(+)$1	1	12	42	23.4273
((...(((................)))..)	chr16:31197672-31197912(+)$1	1	133	163	21.9274
..((((((((............))))))))	chr17:80419979-80420282(+)$1	1	117	147	20.1230
)))).((((((.............))))))	chr22:49910373-49910679(-)$1	1	234	264	19.4428
...((((((..............)))))).	chr17:80877731-80878007(+)$1	1	139	169	22.8986
..(((((((..............)))))))	chr7:153097650-153097919(-)$1	1	154	184	23.6780
(((..(..(((...........)))..)..	chr6:7125714-7125956(+)$1	1	72	102	23.7255
(.(((.((((............)))).)))	chr21:45164013-45164274(+)$1	1	85	115	23.5011
((((((((..(............)..))))	chr20:57467541-57467796(+)$1	1	83	113	22.2788
))((((.((((............))))...	chr1:22081074-22081421(-)$1	1	279	309	22.8558
((.((((((((...........))))))))	chr16:89483731-89483998(-)$1	1	22	52	22.1891
(((((..((((...........)))).)))	chr11:66391151-66391383(+)$1	1	23	53	24.4485
(.(((.((..............)).))).)	chr7:120797389-120797665(+)$1	1	1	31	20.7960
(((((((................)))))))	chr11:66391277-66391538(+)$1	1	89	119	22.0110
(((((((((((..........)))))))))	chr16:89477796-89478073(-)$1	1	124	154	18.1102
))).)))(((((............))))).	chr16:89433340-89433639(-)$1	1	268	298	20.0258
(((((((((((...........))))....	chrX:13333353-13333624(+)$1	1	122	152	22.6284
.(((.((((((.............))).))	chr16:31198403-31198667(+)$1	1	42	72	23.7647
((..((((.(............).))))..	chr2:97558351-97558631(-)$1	1	147	177	23.4169
((((((((.((...........))))))))	chr10:126804867-126805128(-)$1	1	153	183	23.0476
....(((((((...........)))).)))	chr22:49945661-49945910(-)$1	1	23	53	24.2321
(((....((((............))))...	chr16:89477502-89477764(-)$1	1	74	104	20.6556
((((((((((.............)))))))	chr22:19840540-19840791(-)$1	1	82	112	24.7095
(...((.(((............))).))..	chr17:80851102-80851369(+)$1	1	53	83	23.6344
(((((((((((............))))).)	chr19:34882773-34883025(+)$1	1	3	33	22.8961
(((...((((............))))))).	chr2:97559160-97559438(-)$1	1	73	103	23.6751

#PSSM
b : 0.11	f : 0.09	i : 0.07	[ : 0.07	g : 0.07	c : 0.07	d : 0.07	e : 0.05	! : 0.05	" : 0.05	= : 0.05	# : 0.03	$ : 0.01	a : 0.01	+ : 0.01	: : 0.01	F : 0.01	h : 0.01	
c : 0.13	" : 0.09	! : 0.09	b : 0.09	i : 0.07	f : 0.07	= : 0.07	g : 0.07	d : 0.05	# : 0.03	[ : 0.03	$ : 0.01	a : 0.01	+ : 0.01	: : 0.01	F : 0.01	h : 0.01	
c : 0.13	g : 0.11	" : 0.11	f : 0.09	i : 0.07	! : 0.07	[ : 0.07	= : 0.05	b : 0.05	d : 0.03	# : 0.03	h : 0.03	+ : 0.01	F : 0.01	e : 0.01	
c : 0.13	g : 0.11	f : 0.11	" : 0.09	h : 0.09	i : 0.07	= : 0.05	b : 0.05	# : 0.05	! : 0.03	+ : 0.01	a : 0.01	[ : 0.01	F : 0.01	d : 0.01	] : 0.01	e : 0.01	
g : 0.13	f : 0.13	[ : 0.13	c : 0.09	h : 0.09	i : 0.07	= : 0.05	" : 0.05	b : 0.03	e : 0.03	d : 0.03	+ : 0.01	: : 0.01	! : 0.01	# : 0.01	
f : 0.21	c : 0.15	g : 0.11	h : 0.09	! : 0.05	= : 0.05	[ : 0.05	d : 0.05	e : 0.05	i : 0.03	a : 0.01	# : 0.01	b : 0.01	" : 0.01	
f : 0.19	c : 0.13	g : 0.11	! : 0.09	h : 0.09	e : 0.09	d : 0.07	= : 0.05	i : 0.03	[ : 0.03	b : 0.01	# : 0.01	
d : 0.21	f : 0.19	c : 0.11	g : 0.09	h : 0.09	e : 0.09	= : 0.05	i : 0.03	! : 0.03	b : 0.01	y : 0.01	
d : 0.19	f : 0.17	[ : 0.09	c : 0.09	g : 0.09	e : 0.09	h : 0.07	= : 0.05	y : 0.05	! : 0.01	w : 0.01	
d : 0.17	f : 0.11	c : 0.09	w : 0.09	h : 0.07	e : 0.07	b : 0.05	= : 0.05	g : 0.05	y : 0.05	a : 0.03	[ : 0.03	v : 0.01	! : 0.01	
d : 0.13	u : 0.11	w : 0.09	f : 0.09	c : 0.07	v : 0.07	b : 0.05	h : 0.05	e : 0.05	a : 0.05	y : 0.05	= : 0.03	g : 0.03	[ : 0.01	
t : 0.33	u : 0.21	v : 0.15	w : 0.11	s : 0.07	y : 0.05	a : 0.01	e : 0.01	
t : 0.33	u : 0.23	v : 0.15	w : 0.11	s : 0.09	y : 0.05	
t : 0.33	u : 0.23	v : 0.15	w : 0.11	s : 0.09	y : 0.05	
t : 0.33	u : 0.23	v : 0.15	w : 0.11	s : 0.09	y : 0.05	
t : 0.33	u : 0.23	v : 0.15	w : 0.11	s : 0.09	y : 0.05	
t : 0.33	u : 0.23	v : 0.15	w : 0.11	s : 0.09	y : 0.05	
t : 0.33	u : 0.23	v : 0.15	w : 0.11	s : 0.09	y : 0.05	
t : 0.33	u : 0.23	v : 0.15	w : 0.11	s : 0.09	y : 0.05	
t : 0.33	u : 0.23	v : 0.15	w : 0.11	s : 0.09	y : 0.05	
t : 0.33	u : 0.23	v : 0.15	w : 0.11	s : 0.09	y : 0.05	
t : 0.33	u : 0.23	v : 0.15	w : 0.11	y : 0.05	= : 0.03	g : 0.01	s : 0.01	a : 0.01	
d : 0.13	v : 0.13	u : 0.11	w : 0.09	h : 0.07	a : 0.07	b : 0.05	c : 0.05	f : 0.05	y : 0.05	= : 0.03	g : 0.03	e : 0.01	] : 0.01	
d : 0.17	g : 0.11	f : 0.11	h : 0.07	] : 0.07	e : 0.07	v : 0.07	b : 0.05	c : 0.05	= : 0.05	y : 0.03	w : 0.01	a : 0.01	u : 0.01	
d : 0.19	f : 0.19	c : 0.13	g : 0.11	e : 0.09	h : 0.07	= : 0.05	i : 0.03	w : 0.01	b : 0.01	2 : 0.01	] : 0.01	
d : 0.21	f : 0.19	g : 0.11	e : 0.09	c : 0.09	h : 0.07	2 : 0.05	= : 0.05	i : 0.03	b : 0.01	] : 0.01	
f : 0.19	c : 0.13	g : 0.11	h : 0.09	e : 0.09	d : 0.07	i : 0.05	= : 0.05	] : 0.05	2 : 0.03	b : 0.03	4 : 0.01	
f : 0.19	c : 0.11	g : 0.11	h : 0.09	i : 0.07	e : 0.07	= : 0.05	] : 0.05	d : 0.03	2 : 0.03	b : 0.03	a : 0.01	3 : 0.01	4 : 0.01	5 : 0.01	
c : 0.13	f : 0.13	g : 0.09	h : 0.09	2 : 0.09	i : 0.07	] : 0.07	= : 0.05	4 : 0.05	5 : 0.03	a : 0.03	d : 0.01	b : 0.01	3 : 0.01	e : 0.01	
c : 0.13	g : 0.09	] : 0.09	h : 0.09	f : 0.09	2 : 0.09	i : 0.07	= : 0.07	3 : 0.05	4 : 0.05	5 : 0.03	b : 0.03	: : 0.01	

#score	1140.931841321265
#seq	51
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_CDS_m1_run2.txt

#BEAR
[==============!!aooooooa22=============	chr14:100070131-100070413(-)$1	282	180	220	17.9000
============[bb[bboooooobb]bb]==========	chr2:233740961-233741207(+)$1	246	158	198	15.9000
h!!eeeee!!ccc[cccnnnnnccc]ccc22eeeee]hhh	chr19:1010266-1010535(-)$1	269	165	205	12.5749
b==============!!aooooooa22=============	chr14:100070077-100070331(-)$1	254	98	138	17.6600
cc"""ccc"""dddd[ccclllcccddddccc333ccc44	chr21:46957752-46957987(-)$1	235	176	216	13.8658
ccc[bb[ggggggg[cccnnnnncccggggggg]bb]ccc	chr19:4542868-4543135(-)$1	267	58	98	12.4387
####dddda!!a[ccclllccc]a4444a]dddd333fff	chr1:156109508-156109785(+)$1	277	134	174	11.6450
eeedddd####ddddddddllldddd333dddd333dddd	chr17:29858634-29858943(+)$1	309	25	65	12.6223
!iiiiiiiii[a[bb[bbmmmmbb]bb]a22iiiiiiiii	chr16:30456914-30457207(-)$1	293	149	189	12.1221
&&bb[ccc"""ccc[ddddllldddd]ccc333ccc333b	chr19:6413400-6413660(-)$1	260	51	91	12.7999
FF==========[ddddoooooodddd]==========::	chr16:70285199-70285476(-)$1	277	66	106	14.2232
fffff[bb!!dddd!!cccmmmmccc22dddd333bb]ff	chr17:80009362-80009612(-)$1	250	62	102	12.2291
bb[bb[bb[a!!ddddoooooodddd22a]bb]bb]bb22	chr16:29818255-29818510(+)$1	255	169	209	13.0464
=========[bb[a!!bboooooobb22abb333======	chr19:41248262-41248520(-)$1	258	19	59	17.1581
gg[bb"""ccc[a[bb!!annnnna22bb]accc333bb]	chr3:128809779-128810083(-)$1	304	87	127	12.6550
hhh]ccc]==================333===========	chr5:149361256-149361641(+)$1	385	199	239	13.0825
ffffff[a[ccc[eeeeeooooooeeeeeccca]ffffff	chr20:25207060-25207372(+)$1	312	175	215	12.5085
========eeeee[cccooooooccc]eeeee22======	chr17:71204275-71204648(-)$1	373	16	56	16.0621
i[bb!!eeeeeccccccooooooccc333ccc]eeeee]b	chr2:242757892-242758187(+)$1	295	181	221	15.8074
g!!ccc!!a!!bba[ammmma]a]bb22a22ccc333ggg	chr17:79826453-79826704(-)$1	251	145	185	13.2008
!!bb"""bb"""eeeeennnnneeeee333bb333bb22d	chr2:231902269-231902488(+)$1	219	74	114	12.6037
"""eeeee[ccc[bb[bboooooobb]bbccc]eeeeecc	chr16:431618-431940(-)$1	322	96	136	13.2228
b[ccc####dddd[ccclllcccdddd333ccc]bb]ccc	chr18:77710756-77710996(-)$1	240	191	231	13.1302
ccdddd"""dddd[ddddnnnnndddd333dddd333ddd	chr1:44086668-44086884(+)$1	216	29	69	12.8906
ee[ccc[ccc[ccc[bbmmmmbbccc]cccccc]eeeee]	chr19:8438838-8439199(+)$1	361	282	322	11.7042
i[bb!!eeeeeccccccooooooccc333ccc]eeeee]b	chr2:242757987-242758224(+)$1	237	86	126	15.8074
=========ddddddddnnnnndddd22dddd4444====	chr1:1288534-1288813(-)$1	279	210	250	14.7417
dd[dddd####a[a[ddddmmmmdddd]a]a333dddd]d	chr7:155567649-155567941(+)$1	292	172	212	12.3404
ffffbb!!ccc!!ddddoooooodddd4444ccc22bb]f	chr10:99433381-99433697(+)$1	316	194	234	14.3925
###dddd"""bb!!cccooooooccc22bb333dddd333	chr8:97345756-97346007(+)$1	251	146	186	16.4735
=$$$$$ggggggg!!bboooooobbggggggg22======	chr21:45565324-45565647(+)$1	323	69	109	14.6609
"ccc!!ccc"""eeeeemmmmeeeee22ccc]ccc333cc	chr7:73085511-73085780(+)$1	269	88	128	12.5211
cccgggggggccc!!bboooooobb333ccc]ggggggg2	chr9:140167246-140167541(+)$1	295	192	232	16.4109
iiiiii$$$$$ddddrrrrrrrrrdddd4444iiiiiiii	chr10:102744409-102744693(+)$1	284	70	110	12.6261
b!!eeeee[ccc[a[bboooooobba]ccceeeee22bb]	chr11:1775138-1775414(-)$1	276	139	179	14.1387
eeeee####ccc!!ddddnnnnndddd333ccc]eeeee2	chr3:52443779-52444040(-)$1	261	195	235	14.2243
cccggggggg[ccccccmmmmccc333ccc]ggggggg33	chr7:150069359-150069602(+)$1	243	1	41	13.1125
d!!ggggggg[ddddbbnnnnnbb]dddd333ggggggg2	chr5:159492142-159492486(+)$1	344	184	224	12.7759
d!!gggggggdddd"""ccclllccc22dddd]ggggggg	chr17:79679256-79679640(+)$1	384	295	335	13.0496
cc!!eeeee####ccc!!annnnna22ccc4444eeeee2	chr22:37865721-37866017(-)$1	296	115	155	13.3011
:==========####bboooooobb22==========:ii	chr17:1945967-1946236(+)$1	269	68	108	15.6876
ffffff[a!!a"""ddddnnnnndddd333a22a]fffff	chr12:120534357-120534619(-)$1	262	220	260	14.1069
ffffff[bbeeeeecccooooooccc]eeeee22bbffff	chr3:47894179-47894447(-)$1	268	170	210	12.4434
"ggggggg####eeeeeooooooeeeee22gggggggfff	chr20:61598666-61598919(+)$1	253	60	100	14.4241
iiibb!!a!!ccc!!bboooooobb22ccc22a22bb]ii	chr1:43200640-43200896(-)$1	256	134	174	15.8901
!!eeeee"""ccc[ccclllccc]ccc333eeeee22a22	chr12:133067155-133067507(+)$1	352	236	276	13.2211
======[a"""a!!cccooooooccc22a]a=========	chr11:60703910-60704252(+)$1	342	86	126	20.1426
beeeee[ccc####cccooooooccc22ccc]eeeee]bb	chr1:31906860-31907285(+)$1	425	23	63	15.4989
eeee[ccc!!ccc!!cccnnnnnccc22ccc]ccceeeee	chr19:8468327-8468608(+)$1	281	204	244	14.5337

#otherMatches

#Seq PSSM
GAGCUGCUGCGCUGGAGCAAGGAGGAGCUGGCGCGGCGGC	chr14:100070131-100070413(-)$1	282	180	220	17.9000
gcgccuguauguccgcgcgugcguguccgcgcaugcaggu	chr2:233740961-233741207(+)$1	246	158	198	15.9000
GCCCUCGGAGGUGGGGUCCUGAGCCGCACAGCUGAGCCGC	chr19:1010266-1010535(-)$1	269	165	205	12.5749
GAGCUGCUGCGCUGGAGCAAGGAGGAGCUGGCGCGGCGGC	chr14:100070077-100070331(-)$1	254	98	138	17.6600
GCUCCGGUCCUGGCGGCACCUCGUGUGCUACCUUUGCUUC	chr21:46957752-46957987(-)$1	235	176	216	13.8658
GCUGUGGGCGUGUGUGUCAAGUGGGCCACGCGUGCAGGGU	chr19:4542868-4543135(-)$1	267	58	98	12.4387
GGUGGGCUCUGUGCAGUCACUGGAGGUUGAAGCCAAGUGG	chr1:156109508-156109785(+)$1	277	134	174	11.6450
GGAGAUCAACUUCCGGCUGAGGCAGUACAUGGACAAGAUU	chr17:29858634-29858943(+)$1	309	25	65	12.6223
GGCAGGCGCCAUGGCGGAAGCCUCGGCGACGGGCGCCUGC	chr16:30456914-30457207(-)$1	293	149	189	12.1221
UCCUUGGACCAGGUGUUGUAUUGCAGGACCCCUUCCCCCA	chr19:6413400-6413660(-)$1	260	51	91	12.7999
CCGGCUGUGCGCCUGGGCCGCUACCCGCGCGCGCAGCUCG	chr16:70285199-70285476(-)$1	277	66	106	14.2232
cgcgcccgccccggcccggacccccgccccggccccgcgc	chr17:80009362-80009612(-)$1	250	62	102	12.2291
gccgccgucgcugccgcgcccccggccccugccgccgccU	chr16:29818255-29818510(+)$1	255	169	209	13.0464
AGCUGUGGGACUACGACCAGGUCCGGGAGAGCAACCUGCA	chr19:41248262-41248520(-)$1	258	19	59	17.1581
CGACCACAUCCAGCUGAACAGCAAGGACAUCGGAGAAGGC	chr3:128809779-128810083(-)$1	304	87	127	12.6550
AAUUUUGCACACUUGAAAUUUUAACCAAGUGGCUAGAUAU	chr5:149361256-149361641(+)$1	385	199	239	13.0825
GCUCAGUGUGGCGUCAGUGUCGGGGCUGAGCCCCUUGAGC	chr20:25207060-25207372(+)$1	312	175	215	12.5085
UGUGGUAGUAUUUAUUUAGGGAGAGACAGAUGUGUUGCCA	chr17:71204275-71204648(-)$1	373	16	56	16.0621
GCGCAGGGCUCGGCUACACAUGGGUAUCCGCCUGAGCCAG	chr2:242757892-242758187(+)$1	295	181	221	15.8074
CCCAGCCUCCUCGGUCUCCUGUCUCGUUGCUGCUUCUGCC	chr17:79826453-79826704(-)$1	251	145	185	13.2008
GCGUUGGUGGAAGCGGCGGGGGGCCGCGGGCAGGUGCUGC	chr2:231902269-231902488(+)$1	219	74	114	12.6037
agcgccgggccgagcgcggagccaugggccgggcuggcac	chr16:431618-431940(-)$1	322	96	136	13.2228
GCAGGACGCAGAACGCCGACGGCUUCUCCACCUACGUGUG	chr18:77710756-77710996(-)$1	240	191	231	13.1302
GGCCUGAAGGCCUGGCAGACCCACUGCAUGAGGCAAGCAG	chr1:44086668-44086884(+)$1	216	29	69	12.8906
AGGGCUUGUGUGGGUCGAGAGCGCCCUCAUGGUGCUGGUG	chr19:8438838-8439199(+)$1	361	282	322	11.7042
GCGCAGGGCUCGGCUACACAUGGGUAUCCGCCUGAGCCAG	chr2:242757987-242758224(+)$1	237	86	126	15.8074
CCUCCAGGGCUCUGCUCGUCGGGGGCUGGGAGAUGUUCCU	chr1:1288534-1288813(-)$1	279	210	250	14.7417
AGCACAGGUCUCUCCGGGCCGCUGUCCUGCGUAACUGUUC	chr7:155567649-155567941(+)$1	292	172	212	12.3404
GAGAAGCCGGUGGAGAGCAGCACCUUUAAGAGCCCUCUCU	chr10:99433381-99433697(+)$1	316	194	234	14.3925
GAGGCGAGGGCACUUGGGGGUCAUUAUUUGAGAUCGUAAG	chr8:97345756-97346007(+)$1	251	146	186	16.4735
GCUGAGUGAGGAAUGGCAGUGAGGUUUCUUCAAUUAGUCU	chr21:45565324-45565647(+)$1	323	69	109	14.6609
UGGACUCCCGCCCAGUGCCCCCACUGAAGGGCUCCCCCGG	chr7:73085511-73085780(+)$1	269	88	128	12.5211
GGAAGAGGCUCCCGGACCUGGAUGUACAGGGCAGUCUCUC	chr9:140167246-140167541(+)$1	295	192	232	16.4109
CCACAUCCUAUCUGGUCCUCUUCCCCAGCCCCAUGUGGUG	chr10:102744409-102744693(+)$1	284	70	110	12.6261
GGUGCGCGAGCUGCAGAAGGCCAUCGGGGCCGUGCCGCUG	chr11:1775138-1775414(-)$1	276	139	179	14.1387
CCGGGAGGGCCAGGGGCUGGGGAGGCCGGAUGGGCCCGGG	chr3:52443779-52444040(-)$1	261	195	235	14.2243
CCCCGGCGGUACCUCUGAAACCGGCCCAGGAGCCGCCGCC	chr7:150069359-150069602(+)$1	243	1	41	13.1125
GUCCAGGAAGAAGCCCAUUUGUUGAGGCUGACCUUCCUGA	chr5:159492142-159492486(+)$1	344	184	224	12.7759
GAGGCCGGGGCCCGGGACGCGGGGCGGAUGGGACCCUGGC	chr17:79679256-79679640(+)$1	384	295	335	13.0496
AGUCCCUGGCAGGGCCUUCGGGUGGUUGGCAAGCCCAGGA	chr22:37865721-37866017(-)$1	296	115	155	13.3011
AGGCUGGGGCCUUUUGACGGCCUUCUUGGUUUCAGCCAAG	chr17:1945967-1946236(+)$1	269	68	108	15.6876
GGCAGGUCUUGCCCUUUGGCCAACAGAUUUCUUGUCCUGC	chr12:120534357-120534619(-)$1	262	220	260	14.1069
GUGAGCGCUUGGGCGCCGUGCUGGGCAGCCCGCUAGGCUC	chr3:47894179-47894447(-)$1	268	170	210	12.4434
ACCACGGGCUCCUGGACUUGCCUGUUCAACCUUGUGGCCA	chr20:61598666-61598919(+)$1	253	60	100	14.4241
GUGUAAUGUCCAGUCCCCAGCCAGGCUCUGUCCCCUGCCA	chr1:43200640-43200896(-)$1	256	134	174	15.8901
AGGAGGUCAUCGACGGCUUCGCCAUCGCCAGCUUCAGCAC	chr12:133067155-133067507(+)$1	352	236	276	13.2211
GGCUGGGCACUGACCAGGAGGAACUGAGCCGCCAGCUGGA	chr11:60703910-60704252(+)$1	342	86	126	20.1426
GCUCAUGGGGAAGAUGGUGUGUUCCAGGCCCGGUGAGACC	chr1:31906860-31907285(+)$1	425	23	63	15.4989
CGGCUCGUUCCAGCCCUCCCAGUGAGCUCUGCACGGCCGG	chr19:8468327-8468608(+)$1	281	204	244	14.5337

#DB
.((((((((((((((..(......)..)))))))))))))	chr14:100070131-100070413(-)$1	1	180	220	17.9000
((((((((((((.((.((......)).)).))))))))))	chr2:233740961-233741207(+)$1	1	158	198	15.9000
(..(((((..(((.(((.....))).)))..))))).)))	chr19:1010266-1010535(-)$1	1	165	205	12.5749
)((((((((((((((..(......)..)))))))))))))	chr14:100070077-100070331(-)$1	1	98	138	17.6600
((...(((...((((.(((...))))))))))...)))..	chr21:46957752-46957987(-)$1	1	176	216	13.8658
(((.((.(((((((.(((.....)))))))))).)).)))	chr19:4542868-4543135(-)$1	1	58	98	12.4387
....(((((..(.(((...))).)....).))))...)))	chr1:156109508-156109785(+)$1	1	134	174	11.6450
(((((((....((((((((...))))...))))...))))	chr17:29858634-29858943(+)$1	1	25	65	12.6223
.(((((((((.(.((.((....)).)).)..)))))))))	chr16:30456914-30457207(-)$1	1	149	189	12.1221
..((.(((...(((.((((...)))).)))...)))...)	chr19:6413400-6413660(-)$1	1	51	91	12.7999
((((((((((((.((((......)))).))))))))))..	chr16:70285199-70285476(-)$1	1	66	106	14.2232
(((((.((..((((..(((....)))..))))...)).))	chr17:80009362-80009612(-)$1	1	62	102	12.2291
((.((.((.(..((((......))))..).)).)).))..	chr16:29818255-29818510(+)$1	1	169	209	13.0464
(((((((((.((.(..((......))..)))...))))))	chr19:41248262-41248520(-)$1	1	19	59	17.1581
((.((...(((.(.((..(.....)..)).))))...)).	chr3:128809779-128810083(-)$1	1	87	127	12.6550
))).))).))))))))))))))))))...)))))))))))	chr5:149361256-149361641(+)$1	1	199	239	13.0825
((((((.(.(((.(((((......))))))))).))))))	chr20:25207060-25207372(+)$1	1	175	215	12.5085
(((((((((((((.(((......))).)))))..))))))	chr17:71204275-71204648(-)$1	1	16	56	16.0621
(.((..(((((((((((......)))...))).))))).)	chr2:242757892-242758187(+)$1	1	181	221	15.8074
(..(((..(..(((.(....).).))..)..)))...)))	chr17:79826453-79826704(-)$1	1	145	185	13.2008
..((...((...(((((.....)))))...))...))..)	chr2:231902269-231902488(+)$1	1	74	114	12.6037
...(((((.(((.((.((......)).))))).)))))))	chr16:431618-431940(-)$1	1	96	136	13.2228
(.(((....((((.(((...)))))))...))).)).)))	chr18:77710756-77710996(-)$1	1	191	231	13.1302
((((((...((((.((((.....))))...))))...)))	chr1:44086668-44086884(+)$1	1	29	69	12.8906
((.(((.(((.(((.((....))))).)))))).))))).	chr19:8438838-8439199(+)$1	1	282	322	11.7042
(.((..(((((((((((......)))...))).))))).)	chr2:242757987-242758224(+)$1	1	86	126	15.8074
(((((((((((((((((.....))))..))))....))))	chr1:1288534-1288813(-)$1	1	210	250	14.7417
((.((((....(.(.((((....)))).).)...)))).)	chr7:155567649-155567941(+)$1	1	172	212	12.3404
((((((..(((..((((......))))....)))..)).)	chr10:99433381-99433697(+)$1	1	194	234	14.3925
...((((...((..(((......)))..))...))))...	chr8:97345756-97346007(+)$1	1	146	186	16.4735
(.....(((((((..((......)))))))))..))))))	chr21:45565324-45565647(+)$1	1	69	109	14.6609
.(((..(((...(((((....)))))..))).)))...))	chr7:73085511-73085780(+)$1	1	88	128	12.5211
(((((((((((((..((......))...))).))))))).	chr9:140167246-140167541(+)$1	1	192	232	16.4109
((((((.....((((.........))))....))))))))	chr10:102744409-102744693(+)$1	1	70	110	12.6261
(..(((((.(((.(.((......))).))))))))..)).	chr11:1775138-1775414(-)$1	1	139	179	14.1387
(((((....(((..((((.....))))...))).))))).	chr3:52443779-52444040(-)$1	1	195	235	14.2243
((((((((((.((((((....)))...))).)))))))..	chr7:150069359-150069602(+)$1	1	1	41	13.1125
(..(((((((.((((((.....)).))))...))))))).	chr5:159492142-159492486(+)$1	1	184	224	12.7759
(..(((((((((((...(((...)))..)))).)))))))	chr17:79679256-79679640(+)$1	1	295	335	13.0496
((..(((((....(((..(.....)..)))....))))).	chr22:37865721-37866017(-)$1	1	115	155	13.3011
.((((((((((....((......))..)))))))))).((	chr17:1945967-1946236(+)$1	1	68	108	15.6876
((((((.(..(...((((.....))))...)..).)))))	chr12:120534357-120534619(-)$1	1	220	260	14.1069
((((((.((((((((((......))).)))))..))))))	chr3:47894179-47894447(-)$1	1	170	210	12.4434
.(((((((....(((((......)))))..))))))))))	chr20:61598666-61598919(+)$1	1	60	100	14.4241
(((((..(..(((..((......))..)))..)..)).))	chr1:43200640-43200896(-)$1	1	134	174	15.8901
..(((((...(((.(((...))).)))...)))))..)..	chr12:133067155-133067507(+)$1	1	236	276	13.2211
((((((.(...(..(((......)))..).))))))))))	chr11:60703910-60704252(+)$1	1	86	126	20.1426
((((((.(((....(((......)))..))).))))).))	chr1:31906860-31907285(+)$1	1	23	63	15.4989
((((.(((..(((..(((.....)))..))).))))))))	chr19:8468327-8468608(+)$1	1	204	244	14.5337

#PSSM
= : 0.12	c : 0.12	b : 0.10	f : 0.10	e : 0.08	i : 0.08	! : 0.06	" : 0.06	d : 0.06	h : 0.04	# : 0.04	g : 0.04	[ : 0.02	& : 0.02	F : 0.02	: : 0.02	
= : 0.16	! : 0.14	c : 0.14	e : 0.10	f : 0.10	i : 0.06	[ : 0.06	# : 0.04	g : 0.04	& : 0.02	F : 0.02	b : 0.02	h : 0.02	" : 0.02	d : 0.02	$ : 0.02	
= : 0.18	! : 0.12	c : 0.10	e : 0.10	f : 0.10	b : 0.08	[ : 0.08	i : 0.06	" : 0.04	# : 0.04	h : 0.02	d : 0.02	$ : 0.02	g : 0.02	
= : 0.18	e : 0.14	b : 0.14	f : 0.10	g : 0.10	d : 0.08	c : 0.08	i : 0.04	" : 0.02	[ : 0.02	# : 0.02	] : 0.02	$ : 0.02	! : 0.02	
= : 0.18	e : 0.14	b : 0.10	d : 0.10	g : 0.10	f : 0.08	c : 0.08	! : 0.06	" : 0.04	i : 0.04	[ : 0.04	$ : 0.02	
= : 0.18	e : 0.12	c : 0.12	d : 0.10	g : 0.10	! : 0.08	f : 0.06	b : 0.04	i : 0.04	[ : 0.04	" : 0.04	# : 0.04	$ : 0.02	
= : 0.16	e : 0.14	[ : 0.14	g : 0.12	c : 0.10	d : 0.08	" : 0.06	! : 0.06	b : 0.04	# : 0.04	i : 0.02	$ : 0.02	
= : 0.16	g : 0.14	e : 0.12	c : 0.12	# : 0.08	b : 0.08	" : 0.08	a : 0.08	! : 0.04	d : 0.02	i : 0.02	] : 0.02	$ : 0.02	
= : 0.16	" : 0.12	g : 0.12	! : 0.10	# : 0.10	c : 0.10	[ : 0.08	e : 0.08	a : 0.04	b : 0.04	i : 0.02	$ : 0.02	
c : 0.16	! : 0.14	" : 0.14	= : 0.12	g : 0.12	# : 0.08	e : 0.08	d : 0.06	i : 0.02	a : 0.02	[ : 0.02	$ : 0.02	
c : 0.22	= : 0.12	" : 0.10	# : 0.10	d : 0.10	[ : 0.08	e : 0.08	! : 0.06	g : 0.04	b : 0.04	$ : 0.02	a : 0.02	
c : 0.28	d : 0.18	= : 0.10	a : 0.08	# : 0.08	b : 0.06	" : 0.06	g : 0.04	! : 0.04	e : 0.04	[ : 0.02	
c : 0.20	d : 0.20	[ : 0.18	e : 0.10	! : 0.08	= : 0.06	# : 0.06	g : 0.04	a : 0.02	b : 0.02	" : 0.02	
d : 0.20	c : 0.14	! : 0.14	[ : 0.12	e : 0.10	a : 0.08	= : 0.06	b : 0.06	# : 0.04	g : 0.02	" : 0.02	
c : 0.26	d : 0.22	[ : 0.12	! : 0.12	b : 0.08	e : 0.08	= : 0.06	" : 0.02	# : 0.02	
c : 0.30	d : 0.20	b : 0.16	! : 0.08	[ : 0.08	e : 0.08	= : 0.02	a : 0.02	r : 0.02	" : 0.02	
c : 0.30	b : 0.22	d : 0.18	! : 0.08	e : 0.08	l : 0.02	o : 0.02	= : 0.02	m : 0.02	r : 0.02	" : 0.02	
o : 0.32	d : 0.12	c : 0.10	b : 0.08	n : 0.08	m : 0.08	l : 0.06	a : 0.04	! : 0.04	= : 0.02	e : 0.02	r : 0.02	
o : 0.44	n : 0.18	m : 0.10	c : 0.06	l : 0.06	d : 0.06	a : 0.04	= : 0.02	r : 0.02	
o : 0.44	n : 0.22	m : 0.14	l : 0.10	c : 0.04	= : 0.02	r : 0.02	
o : 0.44	n : 0.22	m : 0.12	l : 0.08	c : 0.06	= : 0.02	a : 0.02	r : 0.02	
o : 0.44	n : 0.22	l : 0.08	c : 0.08	m : 0.06	= : 0.02	] : 0.02	b : 0.02	e : 0.02	r : 0.02	
o : 0.42	n : 0.14	c : 0.10	d : 0.08	b : 0.06	m : 0.04	e : 0.04	] : 0.02	= : 0.02	a : 0.02	r : 0.02	l : 0.02	
c : 0.30	d : 0.22	b : 0.14	o : 0.12	e : 0.06	n : 0.04	] : 0.04	a : 0.02	= : 0.02	r : 0.02	
c : 0.30	d : 0.24	b : 0.18	a : 0.08	e : 0.08	] : 0.04	4 : 0.02	= : 0.02	3 : 0.02	
d : 0.28	c : 0.26	2 : 0.12	b : 0.10	e : 0.08	3 : 0.04	] : 0.02	4 : 0.02	= : 0.02	g : 0.02	a : 0.02	
2 : 0.34	d : 0.20	] : 0.14	3 : 0.12	e : 0.06	c : 0.04	g : 0.04	4 : 0.02	b : 0.02	
3 : 0.22	2 : 0.22	c : 0.14	e : 0.08	= : 0.06	b : 0.06	d : 0.06	] : 0.06	g : 0.04	4 : 0.04	
c : 0.22	3 : 0.20	a : 0.14	d : 0.10	= : 0.08	b : 0.08	e : 0.06	g : 0.04	4 : 0.04	2 : 0.02	
c : 0.30	3 : 0.14	] : 0.12	= : 0.10	2 : 0.08	d : 0.08	g : 0.04	b : 0.04	e : 0.04	4 : 0.04	
c : 0.24	= : 0.12	d : 0.12	2 : 0.08	a : 0.08	e : 0.08	g : 0.06	3 : 0.06	b : 0.06	4 : 0.06	] : 0.02	
c : 0.22	= : 0.14	d : 0.12	e : 0.10	3 : 0.10	g : 0.08	] : 0.08	b : 0.04	4 : 0.04	2 : 0.04	i : 0.02	
c : 0.16	= : 0.14	3 : 0.14	g : 0.10	] : 0.10	e : 0.08	2 : 0.08	d : 0.06	i : 0.04	a : 0.04	4 : 0.04	
= : 0.14	e : 0.14	3 : 0.12	c : 0.12	] : 0.10	g : 0.10	2 : 0.08	d : 0.06	i : 0.04	4 : 0.04	b : 0.02	a : 0.02	
= : 0.20	e : 0.20	3 : 0.16	g : 0.10	b : 0.08	c : 0.06	i : 0.04	d : 0.04	2 : 0.04	f : 0.02	4 : 0.02	] : 0.02	
= : 0.20	e : 0.18	b : 0.12	3 : 0.12	g : 0.10	2 : 0.06	c : 0.04	i : 0.04	f : 0.04	d : 0.04	] : 0.02	4 : 0.02	
= : 0.22	e : 0.16	3 : 0.12	b : 0.10	g : 0.10	] : 0.06	d : 0.06	f : 0.06	i : 0.04	2 : 0.04	c : 0.02	
= : 0.20	e : 0.14	f : 0.10	g : 0.10	b : 0.08	c : 0.06	d : 0.06	3 : 0.06	] : 0.06	i : 0.04	h : 0.02	2 : 0.02	: : 0.02	a : 0.02	
= : 0.18	f : 0.12	c : 0.08	i : 0.08	] : 0.08	g : 0.08	e : 0.08	3 : 0.06	2 : 0.06	b : 0.06	d : 0.04	h : 0.02	4 : 0.02	: : 0.02	
= : 0.18	f : 0.14	2 : 0.12	c : 0.08	d : 0.08	i : 0.08	b : 0.08	] : 0.06	g : 0.04	3 : 0.04	h : 0.02	4 : 0.02	: : 0.02	e : 0.02	

#score	689.5807515100697
#seq	49
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456SOS_UTP18_transcript_m2_run2.txt

#BEAR
gggggggqqqqqqqqgggggg	chr21:9826116-9826346(+)$1	230	42	63	7.4046
ggg[cccpppppppccc]ggg	chr11:17097271-17097515(-)$1	244	147	168	13.9644
eeeeerrrrrrrrreeeeedd	chr19:1408179-1408466(+)$1	287	249	270	9.6790
####cccpppppppccc4444	chr4:1239034-1239325(-)$1	291	80	101	12.9424
gggggggpppppppggggggg	chr6:133136369-133136604(+)$1	235	109	130	13.2504
eeeee[apppppppaeeeee:	chr20:26189972-26190251(-)$1	279	163	184	11.8765
!!eeeeeqqqqqqqqeeeee2	chr7:98479336-98479603(+)$1	267	72	93	6.8269
eee[cccpppppppccc]eee	chr16:592325-592661(+)$1	336	130	151	13.5857
ffffbbrrrrrrrrrbb]fff	chr9:33952673-33952919(-)$1	246	87	108	8.5044
[eeeeeqqqqqqqqeeeee]a	chr2:97559874-97560144(-)$1	270	5	26	6.6189
===[cccpppppppccc]===	chr17:18965262-18965550(+)$1	288	160	181	13.9695
dd!!cccpppppppcccdddd	chr3:128211693-128211976(+)$1	283	28	49	13.2527
hhhhhhhppppppphhhhhhh	chr11:122929985-122930224(-)$1	239	28	49	11.3532
iieeeeepppppppeeeee::	chrX:135961250-135961486(-)$1	236	147	168	10.9265
gggggggpppppppggggggg	chr9:136216856-136217107(+)$1	251	33	54	13.2504
Fffffffpppppppffffff:	chr19:50000888-50001151(+)$1	263	152	173	10.1461
ddeeeeeqqqqqqqqeeeee]	chr11:122928707-122928926(-)$1	219	167	188	6.7601
ddd[cccpppppppccc]ddd	chr17:74554771-74555056(+)$1	285	193	214	13.2529
eee[cccqqqqqqqqccceee	chr11:5275486-5275725(-)$1	239	164	185	7.4911
cccddddpppppppdddd]cc	chr8:142139000-142139245(+)$1	245	57	78	12.4193
ddd[cccpppppppccc]ddd	chr20:26189854-26190153(-)$1	299	238	259	13.2529
iiiiiiipppppppiiiiiii	chr20:2637165-2637383(+)$1	218	23	44	13.2616
h"""bbrrrrrrrrrbb333h	chr4:174253033-174253339(-)$1	306	94	115	9.0530
eeee[bbpppppppbb]eeee	chr22:22899783-22900056(-)$1	273	149	170	11.9908
iiiiiiipppppppiiiiiii	chr20:2637183-2637414(+)$1	231	5	26	13.2616
d[bb[bbpppppppbbbbddd	chr14:102548650-102548879(-)$1	229	142	163	10.7108
"dddd[apppppppa]dddd]	chr1:76253498-76253738(+)$1	240	7	28	12.2407
ggggcccqqqqqqqqccc22g	chr7:148580782-148581085(-)$1	303	141	162	7.3672
ddd[cccqqqqqqqqccc22d	chr1:28905164-28905423(-)$1	259	193	214	6.9940
c!!ddddpppppppdddd444	chr2:232321054-232321285(-)$1	231	79	100	12.5232
gggggggqqqqqqqqgggggg	chr1:173835351-173835603(-)$1	252	180	201	7.4046
gggggggpppppppggggggg	chr12:6878988-6879221(+)$1	233	81	102	13.2504
ddeeeeeqqqqqqqqeeeee]	chr11:122928726-122928972(-)$1	246	213	234	6.7601
[ccc[bbpppppppbbcccdd	chr11:122929521-122929760(-)$1	239	137	158	12.1382
cc[ddddpppppppddddccc	chr11:65210937-65211206(+)$1	269	1	22	12.4248
h!!ddddpppppppdddd777	chr17:2232338-2232574(-)$1	236	87	108	10.8084
hhhhhhhppppppphhhhhhh	chr17:74557083-74557364(+)$1	281	67	88	11.3532
gggggggpppppppggggggg	chr7:22896127-22896407(+)$1	280	54	75	13.2504
dd[ddddpppppppdddd]dd	chr1:205718999-205719270(-)$1	271	70	91	12.3876
gggggggpppppppggggggg	chr5:40832664-40832937(-)$1	273	154	175	13.2504
eee[cccpppppppccceeee	chr2:159313512-159313832(+)$1	320	290	311	13.5242
ggg[cccpppppppccc]ggg	chr11:17097223-17097471(-)$1	248	103	124	13.9644
[ccc[bbpppppppbbcccdd	chr11:122929515-122929721(-)$1	206	98	119	12.1382
ff[ddddpppppppdddd]ff	chr1:173835915-173836182(-)$1	267	179	200	12.1013
[ccccccpppppppccc22cc	chr7:1488497-1488788(-)$1	291	151	172	13.0389
ggeeeeepppppppeeeee]g	chrX:135961286-135961534(-)$1	248	195	216	12.8963
Ibb[cccpppppppcccbbdd	chr2:133015120-133015366(-)$1	246	11	32	10.9444
b[eeeeepppppppeeeeebb	chr11:122929940-122930185(-)$1	245	1	22	11.8434
"ddddrrrrrrrrrdddd444	chr2:203141063-203141332(+)$1	269	138	159	9.3323

#otherMatches

#Seq PSSM
CGGGGAGAGCCCGUCCUCCCC	chr21:9826116-9826346(+)$1	230	42	63	7.4046
uuuuccuuaguguuggguaaa	chr11:17097271-17097515(-)$1	244	147	168	13.9644
CGCCCAAACUUGGCGGGCGGC	chr19:1408179-1408466(+)$1	287	249	270	9.6790
UGGUGUCGUGUGUAGACUGUG	chr4:1239034-1239325(-)$1	291	80	101	12.9424
UUCACUCCUUUUAUGAGUGAA	chr6:133136369-133136604(+)$1	235	109	130	13.2504
GGUGGUGUGUCGUUCCCACCC	chr20:26189972-26190251(-)$1	279	163	184	11.8765
CGUGUAUGUCUGGGAGUACAA	chr7:98479336-98479603(+)$1	267	72	93	6.8269
uugugauucuggccgucccag	chr16:592325-592661(+)$1	336	130	151	13.5857
UGUGGUAAUUUCCAAGCACAU	chr9:33952673-33952919(-)$1	246	87	108	8.5044
ggccuggguaugugugggugu	chr2:97559874-97560144(-)$1	270	5	26	6.6189
agaacgcggucugagugguUU	chr17:18965262-18965550(+)$1	288	160	181	13.9695
UGGAAGUGGAAGAAACUCACC	chr3:128211693-128211976(+)$1	283	28	49	13.2527
GUUGCUUAUGGUGCAGGUAAC	chr11:122929985-122930224(-)$1	239	28	49	11.3532
UUGGUUAUUUCAUUUGACCUA	chrX:135961250-135961486(-)$1	236	147	168	10.9265
CACCUGUCCUUCGAGCAGGUG	chr9:136216856-136217107(+)$1	251	33	54	13.2504
CUUGGUAAAACUGAUGCCGGA	chr19:50000888-50001151(+)$1	263	152	173	10.1461
CCCUAUUUUAAUGUUGGUAGU	chr11:122928707-122928926(-)$1	219	167	188	6.7601
UCUGGAGAAUAAACCUUAAGG	chr17:74554771-74555056(+)$1	285	193	214	13.2529
GCACUGUGACAAGCUGCAUGU	chr11:5275486-5275725(-)$1	239	164	185	7.4911
GGCCGGGGAUCGCGCCCGAGC	chr8:142139000-142139245(+)$1	245	57	78	12.4193
UGCUCCCCUCUGGCGGGUGCG	chr20:26189854-26190153(-)$1	299	238	259	13.2529
UUCUCUGGUAUGGGUGGGGGG	chr20:2637165-2637383(+)$1	218	23	44	13.2616
gaagaugaagaaUAAAUGGCU	chr4:174253033-174253339(-)$1	306	94	115	9.0530
ccggcaccaccccugucccgg	chr22:22899783-22900056(-)$1	273	149	170	11.9908
UUCUCUGGUAUGGGUGGGGGG	chr20:2637183-2637414(+)$1	231	5	26	13.2616
CACAAGCACAUAUGGCUGGAC	chr14:102548650-102548879(-)$1	229	142	163	10.7108
ACAAAGUAGAUGAGGGUUUGA	chr1:76253498-76253738(+)$1	240	7	28	12.2407
cggggccggggucggggcgUU	chr7:148580782-148581085(-)$1	303	141	162	7.3672
GGGAAUUAGUAACACAAUGGC	chr1:28905164-28905423(-)$1	259	193	214	6.9940
UAAUUGAUGAAAUCUCAAGAA	chr2:232321054-232321285(-)$1	231	79	100	12.5232
UGCUGUUAAUGGUUAAGCAGU	chr1:173835351-173835603(-)$1	252	180	201	7.4046
UCUCCUGGUCCCCACaggagg	chr12:6878988-6879221(+)$1	233	81	102	13.2504
CCCUAUUUUAAUGUUGGUAGU	chr11:122928726-122928972(-)$1	246	213	234	6.7601
ugagcgaCCAUUCUUCCUUAG	chr11:122929521-122929760(-)$1	239	137	158	12.1382
CAUGUGUUUAUUUUACACUGU	chr11:65210937-65211206(+)$1	269	1	22	12.4248
UUAUUCAAAAUGUCUGAACCU	chr17:2232338-2232574(-)$1	236	87	108	10.8084
CUGUGGCUGUUAGUGCUAUGG	chr17:74557083-74557364(+)$1	281	67	88	11.3532
GCCGAGUGGAAAGAAUUUGGU	chr7:22896127-22896407(+)$1	280	54	75	13.2504
CCAUCGGCUGAAGUUCGGGGG	chr1:205718999-205719270(-)$1	271	70	91	12.3876
AUUUCAGCAUUUAACUGAGAU	chr5:40832664-40832937(-)$1	273	154	175	13.2504
CGCCAGGGCCAGGACCUgcgc	chr2:159313512-159313832(+)$1	320	290	311	13.5242
uuuuccuuaguguuggguaaa	chr11:17097223-17097471(-)$1	248	103	124	13.9644
ugagcgaCCAUUCUUCCUUAG	chr11:122929515-122929721(-)$1	206	98	119	12.1382
CAUUUAUAUUUAACGUGACUG	chr1:173835915-173836182(-)$1	267	179	200	12.1013
ACGGGGCCUUGAGCGCCCACC	chr7:1488497-1488788(-)$1	291	151	172	13.0389
UUGGUUAUUUCAUUUGACCUA	chrX:135961286-135961534(-)$1	248	195	216	12.8963
CACGCAGAUUUUUCCUGGUAC	chr2:133015120-133015366(-)$1	246	11	32	10.9444
GCAGGUAACAAUGGUAUCUCA	chr11:122929940-122930185(-)$1	245	1	22	11.8434
CUGACUCAAUAUUCGUCACUA	chr2:203141063-203141332(+)$1	269	138	159	9.3323

#DB
(((((((........))))))	chr21:9826116-9826346(+)$1	1	42	63	7.4046
(((.(((.......))).)))	chr11:17097271-17097515(-)$1	1	147	168	13.9644
(((((.........)))))))	chr19:1408179-1408466(+)$1	1	249	270	9.6790
....(((.......)))....	chr4:1239034-1239325(-)$1	1	80	101	12.9424
(((((((.......)))))))	chr6:133136369-133136604(+)$1	1	109	130	13.2504
(((((.(.......)))))).	chr20:26189972-26190251(-)$1	1	163	184	11.8765
..(((((........))))).	chr7:98479336-98479603(+)$1	1	72	93	6.8269
(((.(((.......))).)))	chr16:592325-592661(+)$1	1	130	151	13.5857
((((((.........)).)))	chr9:33952673-33952919(-)$1	1	87	108	8.5044
.(((((........))))).)	chr2:97559874-97560144(-)$1	1	5	26	6.6189
(((.(((.......))).)))	chr17:18965262-18965550(+)$1	1	160	181	13.9695
((..(((.......)))))))	chr3:128211693-128211976(+)$1	1	28	49	13.2527
(((((((.......)))))))	chr11:122929985-122930224(-)$1	1	28	49	11.3532
))(((((.......)))))..	chrX:135961250-135961486(-)$1	1	147	168	10.9265
(((((((.......)))))))	chr9:136216856-136217107(+)$1	1	33	54	13.2504
)((((((.......)))))).	chr19:50000888-50001151(+)$1	1	152	173	10.1461
(((((((........))))).	chr11:122928707-122928926(-)$1	1	167	188	6.7601
(((.(((.......))).)))	chr17:74554771-74555056(+)$1	1	193	214	13.2529
(((.(((........))))))	chr11:5275486-5275725(-)$1	1	164	185	7.4911
(((((((.......)))).))	chr8:142139000-142139245(+)$1	1	57	78	12.4193
(((.(((.......))).)))	chr20:26189854-26190153(-)$1	1	238	259	13.2529
(((((((.......)))))))	chr20:2637165-2637383(+)$1	1	23	44	13.2616
(...((.........))...)	chr4:174253033-174253339(-)$1	1	94	115	9.0530
((((.((.......)).))))	chr22:22899783-22900056(-)$1	1	149	170	11.9908
(((((((.......)))))))	chr20:2637183-2637414(+)$1	1	5	26	13.2616
(.((.((.......)))))))	chr14:102548650-102548879(-)$1	1	142	163	10.7108
.((((.(.......).)))).	chr1:76253498-76253738(+)$1	1	7	28	12.2407
(((((((........)))..)	chr7:148580782-148581085(-)$1	1	141	162	7.3672
(((.(((........)))..)	chr1:28905164-28905423(-)$1	1	193	214	6.9940
(..((((.......))))...	chr2:232321054-232321285(-)$1	1	79	100	12.5232
(((((((........))))))	chr1:173835351-173835603(-)$1	1	180	201	7.4046
(((((((.......)))))))	chr12:6878988-6879221(+)$1	1	81	102	13.2504
(((((((........))))).	chr11:122928726-122928972(-)$1	1	213	234	6.7601
.(((.((.......)))))))	chr11:122929521-122929760(-)$1	1	137	158	12.1382
((.((((.......)))))))	chr11:65210937-65211206(+)$1	1	1	22	12.4248
(..((((.......))))...	chr17:2232338-2232574(-)$1	1	87	108	10.8084
(((((((.......)))))))	chr17:74557083-74557364(+)$1	1	67	88	11.3532
(((((((.......)))))))	chr7:22896127-22896407(+)$1	1	54	75	13.2504
((.((((.......)))).))	chr1:205718999-205719270(-)$1	1	70	91	12.3876
(((((((.......)))))))	chr5:40832664-40832937(-)$1	1	154	175	13.2504
(((.(((.......)))))))	chr2:159313512-159313832(+)$1	1	290	311	13.5242
(((.(((.......))).)))	chr11:17097223-17097471(-)$1	1	103	124	13.9644
.(((.((.......)))))))	chr11:122929515-122929721(-)$1	1	98	119	12.1382
((.((((.......)))).))	chr1:173835915-173836182(-)$1	1	179	200	12.1013
.((((((.......)))..))	chr7:1488497-1488788(-)$1	1	151	172	13.0389
(((((((.......))))).)	chrX:135961286-135961534(-)$1	1	195	216	12.8963
(((.(((.......)))))((	chr2:133015120-133015366(-)$1	1	11	32	10.9444
(.(((((.......)))))))	chr11:122929940-122930185(-)$1	1	1	22	11.8434
.((((.........))))...	chr2:203141063-203141332(+)$1	1	138	159	9.3323

#PSSM
g : 0.22	d : 0.16	e : 0.12	[ : 0.08	h : 0.08	i : 0.06	c : 0.06	f : 0.04	" : 0.04	# : 0.02	! : 0.02	= : 0.02	F : 0.02	I : 0.02	b : 0.02	
g : 0.22	d : 0.18	e : 0.14	c : 0.10	! : 0.06	f : 0.06	i : 0.06	h : 0.04	[ : 0.04	# : 0.02	= : 0.02	" : 0.02	b : 0.02	
e : 0.26	g : 0.20	d : 0.10	c : 0.08	! : 0.06	[ : 0.06	f : 0.04	h : 0.04	i : 0.04	b : 0.04	# : 0.02	= : 0.02	" : 0.02	
[ : 0.20	e : 0.20	g : 0.16	d : 0.16	c : 0.06	f : 0.04	h : 0.04	i : 0.04	# : 0.02	! : 0.02	" : 0.02	b : 0.02	
c : 0.28	e : 0.18	d : 0.16	g : 0.14	[ : 0.08	b : 0.04	h : 0.04	i : 0.04	f : 0.02	
c : 0.28	g : 0.14	e : 0.14	b : 0.12	d : 0.12	r : 0.04	[ : 0.04	h : 0.04	i : 0.04	f : 0.02	
c : 0.28	g : 0.14	e : 0.12	d : 0.12	r : 0.08	b : 0.08	a : 0.04	h : 0.04	i : 0.04	q : 0.02	f : 0.02	
p : 0.73	q : 0.18	r : 0.08	
p : 0.73	q : 0.18	r : 0.08	
p : 0.73	q : 0.18	r : 0.08	
p : 0.73	q : 0.18	r : 0.08	
p : 0.73	q : 0.18	r : 0.08	
p : 0.73	q : 0.18	r : 0.08	
p : 0.73	q : 0.18	r : 0.08	
c : 0.22	q : 0.16	d : 0.14	e : 0.10	g : 0.10	b : 0.08	a : 0.04	r : 0.04	h : 0.04	i : 0.04	f : 0.02	
c : 0.28	e : 0.18	g : 0.14	d : 0.14	b : 0.12	h : 0.04	i : 0.04	f : 0.02	] : 0.02	
c : 0.32	e : 0.18	d : 0.16	g : 0.14	b : 0.06	h : 0.04	i : 0.04	f : 0.02	] : 0.02	
e : 0.22	d : 0.18	g : 0.14	] : 0.14	c : 0.10	h : 0.04	i : 0.04	b : 0.04	4 : 0.02	f : 0.02	3 : 0.02	2 : 0.02	
e : 0.26	g : 0.18	d : 0.10	4 : 0.06	] : 0.06	2 : 0.06	c : 0.06	f : 0.04	h : 0.04	i : 0.04	= : 0.02	3 : 0.02	7 : 0.02	b : 0.02	
d : 0.20	g : 0.18	e : 0.16	4 : 0.06	f : 0.06	c : 0.06	] : 0.04	h : 0.04	i : 0.04	2 : 0.04	= : 0.02	: : 0.02	3 : 0.02	7 : 0.02	b : 0.02	
g : 0.22	d : 0.20	e : 0.08	4 : 0.06	: : 0.06	h : 0.06	] : 0.06	c : 0.06	f : 0.04	i : 0.04	2 : 0.02	a : 0.02	= : 0.02	7 : 0.02	b : 0.02	

#score	550.9449759393042
#seq	49
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_UTR_m3_run1.txt

#BEAR
:ccc[ddddddddmmmmdddd]dddd]ccc:	chr19:7997496-7997737(-)$1	241	155	186	11.7503
ggggdddd[ddddmmmmdddd]dddd:ccc[	chr12:108930367-108930651(-)$1	284	106	137	12.3617
ccc[eeeee[ddddllldddd]eeeee22cc	chr19:39327942-39328217(-)$1	275	90	121	10.5038
ffff[a[dddd[ammmma]dddd]a]fffff	chr16:84215706-84216021(-)$1	315	81	112	10.9690
ee!!dddd[ddddmmmmdddd22dddd]eee	chr19:1274284-1274545(+)$1	261	109	140	13.4079
b[ccc!!a[ddddmmmmdddd]a22ccc333	chrX:133931033-133931343(-)$1	310	258	289	15.4327
[ccc!!bb!!cccmmmmccc]bb]ccc]ccc	chr19:4722405-4722664(-)$1	259	39	70	12.6680
ccbb$$$$$ddddmmmmdddd4444bb]ccc	chr14:24034799-24035011(-)$1	212	135	166	13.5549
ffff"""ccccccmmmmccc4444ccc333f	chr19:10227424-10227706(-)$1	282	189	220	13.0396
:iiiiiiiiicccmmmmccc]iiiiiiiii:	chr12:46123518-46123817(+)$1	299	265	296	10.9700
&ccc[bb!!ddddmmmmdddd]bb]ccciii	chr14:103573691-103573963(+)$1	272	24	55	13.8089
eeaccc[a[ddddmmmmdddd]a]ccc]a]e	chr4:184020631-184020906(+)$1	275	152	183	15.2567
[ccc[a!!bb!!ammmma22bba]ccc====	chr9:101558472-101558903(-)$1	431	175	206	10.8870
ddda!!bb[ddddmmmmdddd]bb22adddd	chr10:93558244-93558612(+)$1	368	310	341	12.5320
[eeeee"""ddddmmmmdddd333eeeee33	chr17:56081177-56081399(-)$1	222	51	82	15.0099
b!!==========mmmm==========22bb	chr2:70056726-70057069(+)$1	343	264	295	12.3673
d"""iiiiiiiiimmmmiiiiiiiii22ddd	chr19:1249783-1250071(+)$1	288	109	140	11.3887
bb[ccc!!eeeeemmmmeeeee333ccc]bb	chr3:38164440-38164717(-)$1	277	26	57	12.2262
!============mmmm============]c	chr2:178129287-178129542(-)$1	255	24	55	12.8937
==!!bb[a[ddddmmmmddddabb]======	chr15:49913144-49913444(+)$1	300	217	248	14.4072
dd!!a[cccddddmmmmdddd]ccc]a]ddd	chr11:67771312-67771671(-)$1	359	298	329	13.9014
fffff[bb!!cccmmmmccc]bb]ffffff2	chr19:15483550-15483831(-)$1	281	59	90	10.4787
cc[ffffffddddmmmmdddd333ffffffc	chr16:2050924-2051300(-)$1	376	307	338	13.6371
gg[ccc!!eeeeellleeeee333ccc22gg	chr11:66384351-66384627(+)$1	276	207	238	11.0180
cc!!bb####cccmmmmccc4444bb22ccc	chr8:101321915-101322277(-)$1	362	305	336	13.0816
[ddddddddddddmmmmdddd4444dddd22	chr10:51827615-51827873(+)$1	258	126	157	12.7671
"ccc!!bb[a[bbmmmmbb]a]bbccc333c	chr12:123001775-123002072(-)$1	297	95	126	11.2143
ddd!!ccc!!cccmmmmccc22ccc22dddd	chr10:70515028-70515332(+)$1	304	209	240	11.3750
!!ccc[gggggggmmmmgggggggccc22bb	chr14:24652893-24653170(-)$1	277	179	210	11.1659
bb[ccc"""ddddmmmmdddd333ccc]bb]	chr19:39936343-39936641(+)$1	298	125	156	15.8581
cc[dddd!!ddddmmmmdddd22ddddcccE	chr7:111846242-111846542(-)$1	300	102	133	13.3074
ff"""ccc[ddddmmmmdddd22ccc22fff	chr17:74380640-74380897(+)$1	257	113	144	14.2772
a[dddd[bbddddmmmmdddd]bbdddd22a	chr12:124092050-124092306(+)$1	256	15	46	12.5721
bbbdddd"""ddddllldddd]dddd]bbcc	chr17:8170273-8170570(+)$1	297	159	190	9.9507
""a!!ccceeeeemmmmeeeee]ccc22a]a	chr14:24651893-24652142(-)$1	249	93	124	11.6138
gggggg[a"""bbmmmmbb333aggggggg:	chr5:176981307-176981582(-)$1	275	232	263	10.8613
[ggggggg[ddddnnnnndddd22ggggggg	chr2:201719641-201719913(-)$1	272	139	170	10.4690
cc[ccc!!ddddnnnnnddddccc]ccc22b	chr17:4792868-4793159(+)$1	291	34	65	10.3508
bggggggg!!cccmmmmcccggggggg]bb2	chr7:148984631-148985022(+)$1	391	132	163	11.9375
eee"""gggggggmmmmggggggg]eeeeea	chr16:684617-684892(-)$1	275	193	224	10.3920
ffffff"""ddddmmmmdddd333ffffff]	chr19:10670886-10671168(-)$1	282	212	243	14.5081
ddd[iiiiiiiiimmmmiiiiiiiii]dddd	chr9:117012808-117013045(+)$1	237	73	104	11.0819
c[dddd"""ddddmmmmddddddddccc::F	chr1:52826585-52826906(-)$1	321	48	79	11.4379
cc!!bb[a[ddddmmmmdddd]a]bb]cccc	chr6:3068681-3069022(+)$1	341	111	142	14.9173
iiiiiiiii[cccmmmmccc]iiiiiiiiic	chr9:139317916-139318231(+)$1	315	49	80	12.6563
hhhhhhhh[ddddmmmmdddd333hhhhhhh	chr4:17812054-17812352(-)$1	298	260	291	13.2281
ccc[eeeeeddddmmmmdddd]eeeeeccc:	chr17:17717837-17718117(-)$1	280	88	119	12.3463
bb[cccccc[cccmmmmcccccc]ccc]bb]	chr14:20923712-20923983(+)$1	271	59	90	11.8854
cc!!bb[bb[ddddllldddd]bbbb333cc	chr11:124492795-124493094(+)$1	299	206	237	11.0608
eeeebb"""ddddmmmmddddbb]eeeee22	chr17:40270971-40271193(-)$1	222	118	149	12.8372
hhhhh####ddddmmmmdddd333hhhhhhh	chr14:53417108-53417396(-)$1	288	60	91	14.1616
cceeeee!!ddddmmmmdddd4444eeeee2	chr3:15093986-15094239(-)$1	253	15	46	13.9420
dd[ccc"""ddddmmmmdddd22cccdddd]	chr10:909959-910259(-)$1	300	212	243	14.7726
ggggggg[eeeeemmmmeeeee22ggggggg	chr2:174229415-174229703(+)$1	288	190	221	11.6689

#otherMatches

#Seq PSSM
UGGACCCGGCCUUUGACAAGGACCGGUUUCU	chr19:7997496-7997737(-)$1	241	155	186	11.7503
GGAGGAGUUGAGGGCCGCCUUUACUCGUGCC	chr12:108930367-108930651(-)$1	284	106	137	12.3617
GCAAUCAGGUGAGCGCAGCUCCUCUGGACUG	chr19:39327942-39328217(-)$1	275	90	121	10.5038
GAGCUGGUGCUGCGGUGGGAGCAGCUGCUUC	chr16:84215706-84216021(-)$1	315	81	112	10.9690
GGAACAAGAGCUGGAGGCAGCCGCUUGCCCA	chr19:1274284-1274545(+)$1	261	109	140	13.4079
GAGGCACCGCGGCGGCGGCUGAGAGGCCGAA	chrX:133931033-133931343(-)$1	310	258	289	15.4327
CUGAACGGCUGGCCGGUGCUUCCAUUAACCU	chr19:4722405-4722664(-)$1	259	39	70	12.6680
UGGUGACAAUGGGAUACUCCACAGAACACAG	chr14:24034799-24035011(-)$1	212	135	166	13.5549
AGCUGGGCCUGUCUACUGGCGAGAAGGAGAA	chr19:10227424-10227706(-)$1	282	189	220	13.0396
CGGGGUCCCGGCUGACAAGUGCGGGGCUUUU	chr12:46123518-46123817(+)$1	299	265	296	10.9700
CGGGCGUAGUGCACAUUUGCAGACUCCCAGC	chr14:103573691-103573963(+)$1	272	24	55	13.8089
cggccgcgggggcgcgggcccgUUCGGACAC	chr4:184020631-184020906(+)$1	275	152	183	15.2567
GCGUGUGACCAGGGCGACAcggagacggcgc	chr9:101558472-101558903(-)$1	431	175	206	10.8870
CGUGGAACGAGUCAAGAGGCUGGUGACGCCU	chr10:93558244-93558612(+)$1	368	310	341	12.5320
GGGCUCACUGGAUCCCAAUCCUUGGAGCUGG	chr17:56081177-56081399(-)$1	222	51	82	15.0099
CUGGGCUCCCUGAAGUCUCGGGGAGCCGUGA	chr2:70056726-70057069(+)$1	343	264	295	12.3673
UCCGAGCGGCGGCGACGGCUGUUGCUAAGGG	chr19:1249783-1250071(+)$1	288	109	140	11.3887
ACGUCCUUCUGGGUCAGCCUGGUCUGGAGGU	chr3:38164440-38164717(-)$1	277	26	57	12.2262
ACUCUUGCCCCGCCCUUGUGGGGCGGGAGGC	chr2:178129287-178129542(-)$1	255	24	55	12.8937
CUCUGGAGACCAGUGGUCUGGCCCCAGAGGU	chr15:49913144-49913444(+)$1	300	217	248	14.4072
CCAGGGUccccccggcgggggcggggcgggc	chr11:67771312-67771671(-)$1	359	298	329	13.9014
UCCAUGGCUCCCGACUACGGCGUGAUGGGCA	chr19:15483550-15483831(-)$1	281	59	90	10.4787
CUACCUGGUGGCAGCUCUGCCCGGGCUAGGA	chr16:2050924-2051300(-)$1	376	307	338	13.6371
CGCGCUCGGGGCACUCUGCCUGUUAGCCACG	chr11:66384351-66384627(+)$1	276	207	238	11.0180
GAUUCGGAAGUCCGGUGGGAAAGGCGUCUCC	chr8:101321915-101322277(-)$1	362	305	336	13.0816
AGCCCACCGAGCCGGGCGGCUAGGAUGGUGA	chr10:51827615-51827873(+)$1	258	126	157	12.7671
ACGCCAUCGUAGUAGAAGCAGGGAGCGGAAG	chr12:123001775-123002072(-)$1	297	95	126	11.2143
GCUAUUCGUUGUUGUAAGGCUCUGACAGGCA	chr10:70515028-70515332(+)$1	304	209	240	11.3750
AGGGUGCGGAGGGGUGCUCUUCUGAUCAGGA	chr14:24652893-24653170(-)$1	277	179	210	11.1659
GGGGUGGAGCGCAGGAUUGUGGGACGCGCCA	chr19:39936343-39936641(+)$1	298	125	156	15.8581
ACUGCGCCGCCGGGUACCCGGGAGCGCGUCG	chr7:111846242-111846542(-)$1	300	102	133	13.3074
CGAGGCCGGGGAGUCCGCUCCAGCGGGGCGC	chr17:74380640-74380897(+)$1	257	113	144	14.2772
UUCAGGUGAAUUGGAUGCAGUGUCCCUGUUA	chr12:124092050-124092306(+)$1	256	15	46	12.5721
GACCGGCUACAGGCAGAGCCUCGCUGUGUGG	chr17:8170273-8170570(+)$1	297	159	190	9.9507
GACAGCCUGUCAGGAUACUGACGAGGAGGAG	chr14:24651893-24652142(-)$1	249	93	124	11.6138
UGGAGGCGGGAGCGGGUGCAGGCCCUCCGGA	chr5:176981307-176981582(-)$1	275	232	263	10.8613
AUAGGAUGCAUUCUUAUUGAAUACUAUCUUG	chr2:201719641-201719913(-)$1	272	139	170	10.4690
UCCGGUAUGGUUCUUAAGACCACCUGGCUCU	chr17:4792868-4793159(+)$1	291	34	65	10.3508
CCCAGGCUGCCUGGCUACAGAGCCUGGAGGG	chr7:148984631-148985022(+)$1	391	132	163	11.9375
CCCAGGCAACCUCUCUAGGGGUUGAGGGCCG	chr16:684617-684892(-)$1	275	193	224	10.3920
UUUGGGUGCGCUUCAUGAAGUAUUCCCAGGC	chr19:10670886-10671168(-)$1	282	212	243	14.5081
AUGUGUCUCAUAGGGAUUUAUGGGAUUCAUU	chr9:117012808-117013045(+)$1	237	73	104	11.0819
UGUGGGUAUGGUCUUGAGGCCCCCAAGCUCC	chr1:52826585-52826906(-)$1	321	48	79	11.4379
UCCAGGGGACCCACAGCUGGGGCGCCAGAGC	chr6:3068681-3069022(+)$1	341	111	142	14.9173
CGAGGAGGGCGGUCGGUGCUUCCCUCCUCGG	chr9:139317916-139318231(+)$1	315	49	80	12.6563
UCCGCUGAGCGGGGCGACCCGAGGUUAGUGG	chr4:17812054-17812352(-)$1	298	260	291	13.2281
CUGACAGCUGUGGUGAUCCACUGGCUGCGGC	chr17:17717837-17718117(-)$1	280	88	119	12.3463
CGGUACAGCUGCCCAAGGGCGUUCGUAACGG	chr14:20923712-20923983(+)$1	271	59	90	11.8854
CUUCCUCGCCGCGGGCUCCGCUGCAGUCCAG	chr11:124492795-124493094(+)$1	299	206	237	11.0608
gcagguacauagcccaagcuaacgcugcccc	chr17:40270971-40271193(-)$1	222	118	149	12.8372
GGGAGUGACGCUUACGAGAGCCAUUUCCUCC	chr14:53417108-53417396(-)$1	288	60	91	14.1616
GUGGGGUUGUCUCGGCUGAGAAACUGCCCUG	chr3:15093986-15094239(-)$1	253	15	46	13.9420
CCGUGGUGUGCAGCCCCCUGCUUUCAGGCCU	chr10:909959-910259(-)$1	300	212	243	14.7726
GUCAAGGUCCCGGAUCCUCGGGUCCCUUGAC	chr2:174229415-174229703(+)$1	288	190	221	11.6689

#DB
.(((.((((((((....)))).)))).))).	chr19:7997496-7997737(-)$1	1	155	186	11.7503
))))((((.((((....)))).)))).(((.	chr12:108930367-108930651(-)$1	1	106	137	12.3617
(((.(((((.((((...)))).)))))..))	chr19:39327942-39328217(-)$1	1	90	121	10.5038
((((.(.((((.(....).)))).).)))))	chr16:84215706-84216021(-)$1	1	81	112	10.9690
((..((((.((((....))))..)))).)))	chr19:1274284-1274545(+)$1	1	109	140	13.4079
(.(((..(.((((....)))).)..)))...	chrX:133931033-133931343(-)$1	1	258	289	15.4327
.(((..((..(((....))).)).))).)))	chr19:4722405-4722664(-)$1	1	39	70	12.6680
((((.....((((....))))....)).)))	chr14:24034799-24035011(-)$1	1	135	166	13.5549
((((...((((((....)))....)))...)	chr19:10227424-10227706(-)$1	1	189	220	13.0396
.((((((((((((....))).))))))))).	chr12:46123518-46123817(+)$1	1	265	296	10.9700
.(((.((..((((....)))).)).))))))	chr14:103573691-103573963(+)$1	1	24	55	13.8089
((((((.(.((((....)))).).))).).)	chr4:184020631-184020906(+)$1	1	152	183	15.2567
.(((.(..((..(....)..))).)))))))	chr9:101558472-101558903(-)$1	1	175	206	10.8870
)))(..((.((((....)))).))..)((((	chr10:93558244-93558612(+)$1	1	310	341	12.5320
.(((((...((((....))))...)))))..	chr17:56081177-56081399(-)$1	1	51	82	15.0099
(..((((((((((....))))))))))..))	chr2:70056726-70057069(+)$1	1	264	295	12.3673
(...(((((((((....)))))))))..)))	chr19:1249783-1250071(+)$1	1	109	140	11.3887
((.(((..(((((....)))))...))).))	chr3:38164440-38164717(-)$1	1	26	57	12.2262
.((((((((((((....)))))))))))).)	chr2:178129287-178129542(-)$1	1	24	55	12.8937
((..((.(.((((....))))))).))))))	chr15:49913144-49913444(+)$1	1	217	248	14.4072
((..(.(((((((....)))).))).).)))	chr11:67771312-67771671(-)$1	1	298	329	13.9014
(((((.((..(((....))).)).)))))).	chr19:15483550-15483831(-)$1	1	59	90	10.4787
((.((((((((((....))))...)))))))	chr16:2050924-2051300(-)$1	1	307	338	13.6371
((.(((..(((((...)))))...)))..))	chr11:66384351-66384627(+)$1	1	207	238	11.0180
((..((....(((....)))....))..)))	chr8:101321915-101322277(-)$1	1	305	336	13.0816
.((((((((((((....))))....))))..	chr10:51827615-51827873(+)$1	1	126	157	12.7671
.(((..((.(.((....)).).)))))...)	chr12:123001775-123002072(-)$1	1	95	126	11.2143
(((..(((..(((....)))..)))..))))	chr10:70515028-70515332(+)$1	1	209	240	11.3750
..(((.(((((((....))))))))))..))	chr14:24652893-24653170(-)$1	1	179	210	11.1659
((.(((...((((....))))...))).)).	chr19:39936343-39936641(+)$1	1	125	156	15.8581
((.((((..((((....))))..)))))))(	chr7:111846242-111846542(-)$1	1	102	133	13.3074
((...(((.((((....))))..)))..)))	chr17:74380640-74380897(+)$1	1	113	144	14.2772
(.((((.((((((....)))).))))))..)	chr12:124092050-124092306(+)$1	1	15	46	12.5721
)((((((...((((...)))).)))).))((	chr17:8170273-8170570(+)$1	1	159	190	9.9507
..(..((((((((....))))).)))..).)	chr14:24651893-24652142(-)$1	1	93	124	11.6138
((((((.(...((....))...)))))))).	chr5:176981307-176981582(-)$1	1	232	263	10.8613
.(((((((.((((.....))))..)))))))	chr2:201719641-201719913(-)$1	1	139	170	10.4690
((.(((..((((.....))))))).)))..)	chr17:4792868-4793159(+)$1	1	34	65	10.3508
((((((((..(((....)))))))))).)).	chr7:148984631-148985022(+)$1	1	132	163	11.9375
(((...(((((((....))))))).))))))	chr16:684617-684892(-)$1	1	193	224	10.3920
((((((...((((....))))...)))))).	chr19:10670886-10671168(-)$1	1	212	243	14.5081
(((.(((((((((....))))))))).))))	chr9:117012808-117013045(+)$1	1	73	104	11.0819
(.((((...((((....)))))))))))..(	chr1:52826585-52826906(-)$1	1	48	79	11.4379
((..((.(.((((....)))).).)).))))	chr6:3068681-3069022(+)$1	1	111	142	14.9173
(((((((((.(((....))).))))))))))	chr9:139317916-139318231(+)$1	1	49	80	12.6563
((((((((.((((....))))...)))))))	chr4:17812054-17812352(-)$1	1	260	291	13.2281
(((.(((((((((....)))).)))))))).	chr17:17717837-17718117(-)$1	1	88	119	12.3463
((.((((((.(((....)))))).))).)).	chr14:20923712-20923983(+)$1	1	59	90	11.8854
((..((.((.((((...)))).))))...))	chr11:124492795-124493094(+)$1	1	206	237	11.0608
((((((...((((....)))))).)))))..	chr17:40270971-40271193(-)$1	1	118	149	12.8372
(((((....((((....))))...)))))))	chr14:53417108-53417396(-)$1	1	60	91	14.1616
(((((((..((((....))))....))))).	chr3:15093986-15094239(-)$1	1	15	46	13.9420
((.(((...((((....))))..))))))).	chr10:909959-910259(-)$1	1	212	243	14.7726
(((((((.(((((....)))))..)))))))	chr2:174229415-174229703(+)$1	1	190	221	11.6689

#PSSM
c : 0.20	b : 0.12	d : 0.11	f : 0.09	[ : 0.09	g : 0.07	e : 0.07	: : 0.03	! : 0.03	" : 0.03	h : 0.03	& : 0.01	= : 0.01	a : 0.01	i : 0.01	
c : 0.27	g : 0.11	d : 0.11	f : 0.09	e : 0.09	b : 0.07	[ : 0.05	i : 0.03	! : 0.03	" : 0.03	= : 0.03	h : 0.03	
c : 0.16	[ : 0.14	! : 0.12	d : 0.11	g : 0.09	f : 0.07	e : 0.07	b : 0.03	i : 0.03	a : 0.03	" : 0.03	h : 0.03	= : 0.01	
c : 0.25	! : 0.14	g : 0.09	f : 0.09	d : 0.09	[ : 0.05	e : 0.05	" : 0.05	i : 0.03	= : 0.03	h : 0.03	b : 0.01	a : 0.01	
c : 0.16	d : 0.12	! : 0.09	b : 0.09	[ : 0.07	e : 0.07	i : 0.07	g : 0.07	" : 0.05	f : 0.05	= : 0.03	h : 0.03	$ : 0.01	a : 0.01	
c : 0.18	d : 0.14	b : 0.11	e : 0.07	! : 0.07	i : 0.07	g : 0.07	[ : 0.05	a : 0.03	" : 0.03	= : 0.03	f : 0.03	$ : 0.01	h : 0.01	# : 0.01	
[ : 0.12	" : 0.12	d : 0.11	! : 0.09	b : 0.09	c : 0.09	g : 0.09	i : 0.07	e : 0.05	= : 0.03	# : 0.03	$ : 0.01	f : 0.01	h : 0.01	
! : 0.12	" : 0.12	b : 0.11	c : 0.11	d : 0.09	a : 0.09	i : 0.07	g : 0.07	e : 0.03	= : 0.03	# : 0.03	$ : 0.01	f : 0.01	h : 0.01	[ : 0.01	
[ : 0.20	" : 0.14	! : 0.12	e : 0.11	d : 0.07	i : 0.07	c : 0.05	b : 0.05	= : 0.03	# : 0.03	g : 0.03	$ : 0.01	f : 0.01	
d : 0.53	[ : 0.07	! : 0.07	e : 0.07	i : 0.05	= : 0.03	g : 0.03	" : 0.03	c : 0.01	b : 0.01	# : 0.01	a : 0.01	
d : 0.59	c : 0.16	e : 0.07	= : 0.03	i : 0.03	g : 0.03	! : 0.01	[ : 0.01	" : 0.01	
d : 0.57	c : 0.16	e : 0.07	= : 0.03	i : 0.03	b : 0.03	g : 0.03	[ : 0.01	! : 0.01	
d : 0.55	c : 0.16	e : 0.07	a : 0.03	= : 0.03	i : 0.03	b : 0.03	g : 0.03	n : 0.01	
m : 0.88	d : 0.05	n : 0.03	l : 0.01	
m : 0.88	l : 0.07	n : 0.03	
m : 0.88	l : 0.07	n : 0.03	
m : 0.88	l : 0.05	n : 0.03	e : 0.01	
d : 0.55	c : 0.16	e : 0.07	a : 0.03	= : 0.03	i : 0.03	b : 0.03	g : 0.03	n : 0.01	
d : 0.57	c : 0.16	e : 0.07	= : 0.03	i : 0.03	b : 0.03	g : 0.03	] : 0.01	2 : 0.01	
d : 0.59	c : 0.16	e : 0.07	= : 0.03	i : 0.03	g : 0.03	2 : 0.01	] : 0.01	3 : 0.01	
d : 0.59	] : 0.07	e : 0.07	g : 0.05	4 : 0.03	= : 0.03	i : 0.03	b : 0.01	a : 0.01	2 : 0.01	3 : 0.01	c : 0.01	
] : 0.25	3 : 0.14	2 : 0.09	4 : 0.09	b : 0.07	i : 0.07	d : 0.05	e : 0.05	g : 0.05	= : 0.03	c : 0.03	a : 0.01	
b : 0.16	3 : 0.14	2 : 0.11	d : 0.09	a : 0.09	4 : 0.09	i : 0.07	c : 0.07	g : 0.05	e : 0.03	= : 0.03	] : 0.01	
] : 0.14	3 : 0.14	d : 0.11	b : 0.11	c : 0.11	4 : 0.09	i : 0.07	g : 0.07	2 : 0.05	e : 0.03	= : 0.03	
c : 0.25	d : 0.12	e : 0.07	i : 0.07	] : 0.07	g : 0.07	4 : 0.05	f : 0.05	b : 0.05	2 : 0.03	= : 0.03	h : 0.03	a : 0.01	3 : 0.01	
c : 0.31	d : 0.12	e : 0.11	b : 0.07	i : 0.07	g : 0.07	= : 0.05	f : 0.05	] : 0.03	2 : 0.03	h : 0.03	
c : 0.25	e : 0.11	d : 0.09	2 : 0.09	] : 0.07	f : 0.07	g : 0.07	= : 0.05	i : 0.03	a : 0.03	h : 0.03	: : 0.01	b : 0.01	3 : 0.01	
c : 0.18	2 : 0.14	] : 0.14	d : 0.11	f : 0.07	e : 0.07	3 : 0.05	= : 0.05	g : 0.05	i : 0.03	h : 0.03	b : 0.01	
c : 0.14	d : 0.12	2 : 0.11	f : 0.09	e : 0.09	3 : 0.07	b : 0.07	i : 0.05	= : 0.05	g : 0.05	a : 0.03	h : 0.03	] : 0.01	: : 0.01	
c : 0.20	d : 0.11	b : 0.11	f : 0.09	3 : 0.07	g : 0.07	2 : 0.07	e : 0.05	i : 0.05	] : 0.05	= : 0.03	h : 0.03	: : 0.01	
c : 0.20	d : 0.09	2 : 0.09	: : 0.07	b : 0.07	] : 0.07	f : 0.05	g : 0.05	a : 0.05	e : 0.03	3 : 0.03	= : 0.03	h : 0.03	[ : 0.01	i : 0.01	E : 0.01	F : 0.01	

#score	676.1713298365388
#seq	54
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_transcript_m2_run1.txt

#BEAR
cc[dddd"""ddddllldddd333ddddc	chr20:10629042-10629301(-)$1	259	125	154	10.5107
eeee[ccceeeeennnnneeeee22ccc3	chr7:43768879-43769195(-)$1	316	146	175	12.3111
dd:eeeee[ddddnnnnndddd22eeeee	chr18:77804178-77804434(+)$1	256	147	176	11.5174
[ccc[bbccc[bbnnnnnbbccc]bbccc	chr17:41113056-41113349(-)$1	293	23	52	10.9097
cc[ffffffddddnnnnndddd22fffff	chr22:36682619-36682824(-)$1	205	88	117	12.8036
"iiiiiiiii[ccclllccciiiiiiiii	chr5:178287023-178287290(+)$1	267	45	74	10.8867
ceeeeecccddddnnnnndddd4444ccc	chr15:75093336-75093585(+)$1	249	108	137	12.8520
hffffff[a!!ccclllccc4444a]fff	chr10:104118339-104118598(+)$1	259	76	105	10.5498
gggggg[ccc[bbnnnnnbb]cccggggg	chr17:78120440-78120736(-)$1	296	232	261	12.1196
eeeee"""eeeeennnnneeeee4444ee	chr11:72553524-72553794(-)$1	270	146	175	12.4846
[a[ccc[ccc!!annnnna22ccc]ccc]	chr5:179198123-179198392(+)$1	269	128	157	12.1388
eeeeee####cccooooooccc22eeeee	chr20:60734895-60735157(+)$1	262	38	67	11.4714
ffffffa[eeeeennnnneeeee]aiiii	chr2:128281096-128281375(-)$1	279	140	169	12.6318
b[ccc!!aeeeeennnnneeeee]a22cc	chr19:50363569-50363797(+)$1	228	28	57	11.8653
===========oooooo============	chr3:186503952-186504201(+)$1	249	2	31	11.0973
dddd[dddd[cccnnnnnccc]dddd]dd	chr6:31805118-31805349(+)$1	231	150	179	11.2511
::===========nnnnn===========	chr6:160163034-160163315(+)$1	281	180	209	12.3020
""ffffff[ddddnnnnndddd333ffff	chr12:132393648-132393923(+)$1	275	13	42	13.6481
h!!dddd"""cccnnnnnccc333dddd4	chr2:99226385-99226638(+)$1	253	73	102	14.3924
aggggggg!!cccnnnnnccc22gggggg	chr6:160506072-160506302(+)$1	230	127	156	14.5470
b"""ccc[eeeeennnnneeeee]ccc33	chr20:47585706-47585968(+)$1	262	23	52	12.3481
!============nnnnn===========	chrX:23802297-23802548(+)$1	251	131	160	14.5793
iiiiiiii[eeeeellleeeee]iiiiii	chr8:121824525-121824766(-)$1	241	195	224	10.3715
bb[eeeee[ddddnnnnndddd]eeeee]	chr20:62658987-62659232(+)$1	245	177	206	12.1095
iiiii[ccc!!bbnnnnnbb22ccciiii	chr7:149318171-149318454(-)$1	283	225	254	12.3215
gg[dddd!!ddddnnnnndddd333dddd	chr1:11710381-11710614(-)$1	233	90	119	13.7009
g"""dddd"""bbnnnnnbb333dddd]g	chr22:38363092-38363386(+)$1	294	200	229	11.7777
ccdddd!!a[cccnnnnnccc]a333ddd	chr13:50571222-50571518(+)$1	296	222	251	13.7749
fffff[a[ddddoooooodddda]fffff	chr7:100161761-100162018(+)$1	257	155	184	10.0916
==========cccnnnnnccc333=====	chr6:31699839-31700098(-)$1	259	183	212	16.0427
'''==========nnnnn==========8	chr14:36240011-36240259(-)$1	248	117	146	11.7259
iiiiii####cccnnnnnccciiiiiiii	chr2:88999446-88999714(+)$1	268	69	98	14.9645
iiiiiiii[ddddnnnnndddd]iiiiii	chr8:25257401-25257659(+)$1	258	13	42	14.1388
iiiiii$$$$$ddddllldddd333iiii	chr3:50310999-50311225(+)$1	226	62	91	10.6404
ee!!ffffffcccnnnnnccc22ffffff	chr1:16474726-16474980(-)$1	254	150	179	12.5289
#ggggggg[cccoooooocccggggggg4	chr17:73231141-73231424(+)$1	283	185	214	11.2000
f[eeeee"""cccmmmmccc4444eeeee	chr12:57538790-57539019(+)$1	229	170	199	9.9516
ffff####a[cccmmmmccc]a22fffff	chr6:112408288-112408538(-)$1	250	92	121	9.5568
d[gggggggddddllldddd333gggggg	chr14:24110888-24111186(+)$1	298	108	137	10.1667
[ffffff"""cccnnnnnccc333fffff	chr12:22696854-22697115(-)$1	261	95	124	14.9879
dd[ccc[ffffffnnnnnffffffccc]d	chr1:46033712-46033935(+)$1	223	45	74	10.6779
iiiiiii!!eeeeellleeeee22iiiii	chr16:70566409-70566659(+)$1	250	167	196	11.0739
!dddda!!eeeeennnnneeeee22a]dd	chr20:62371781-62372024(+)$1	243	103	132	12.0995
eee[bb!!ddddoooooodddd22bbeee	chr17:42580549-42580782(-)$1	233	117	146	9.7223
ffffff####cccooooooccc22fffff	chr16:72162850-72163065(-)$1	215	40	69	11.5578
!ffffff"""cccoooooocccffffff4	chr2:203149049-203149337(+)$1	288	204	233	10.7708
aa!!eeeee[cccnnnnnccc]eeeee44	chr3:129117706-129117970(-)$1	264	114	143	12.5359
#dddd"""eeeeennnnneeeee22dddd	chr2:128175959-128176220(+)$1	261	178	207	11.9304
cceeeee"""cccnnnnnccc333eeeee	chr2:42543107-42543338(+)$1	231	141	170	14.7898
eeee[cccddddoooooodddd333ccc]	chr14:23391261-23391540(-)$1	279	230	259	11.0348
hhhh[ccc!!cccnnnnncccccc]hhhh	chr20:3210779-3211035(-)$1	256	214	243	12.4180
ffff"""ffffffnnnnnfffffffffff	chr20:3781033-3781286(+)$1	253	118	147	10.5967
ggggggg"""cccmmmmccc333gggggg	chr5:59899075-59899359(-)$1	284	40	69	11.0668
======gggggggnnnnnggggggg22==	chr17:38184872-38185129(-)$1	257	135	164	12.6942

#otherMatches

#Seq PSSM
AGAUGGCCAAGUUUUUAGAGCAGAGCCGC	chr20:10629042-10629301(-)$1	259	125	154	10.5107
GUGGUGCUUCUGUUGCUCACAGGUUAGUC	chr7:43768879-43769195(-)$1	316	146	175	12.3111
uuccuggguguggaauCACCAUUUUCCAG	chr18:77804178-77804434(+)$1	256	147	176	11.5174
GUGACUCGCCGUGGGGAACAGGCUGAUCA	chr17:41113056-41113349(-)$1	293	23	52	10.9097
ACCGCUGCCCUGCGGCCAGCAGGUGGCAG	chr22:36682619-36682824(-)$1	205	88	117	12.8036
GCUUCCUGCUUGCAGAGUGCGGCGGGGAG	chr5:178287023-178287290(+)$1	267	45	74	10.8867
UGGGCACCUGCCGAGACCCGGCACUCAGG	chr15:75093336-75093585(+)$1	249	108	137	12.8520
CUCCAGGGUACAGCACAGCUACAGAGCCU	chr10:104118339-104118598(+)$1	259	76	105	10.5498
GCCCUGCGCUCCGGAGGUCGUGGUCAGGG	chr17:78120440-78120736(-)$1	296	232	261	12.1196
CAGUUGAAUUAAAAGAUGUUUAAAGAAAA	chr11:72553524-72553794(-)$1	270	146	175	12.4846
GUGUCUGUGUGACGAGCAGGGACAGGGGA	chr5:179198123-179198392(+)$1	269	128	157	12.1388
UACCAGCAGAUCCUGCACCGGAACCUGGU	chr20:60734895-60735157(+)$1	262	38	67	11.4714
AUCUUUGGGAGGGCUUUUCCCUUGCGUUC	chr2:128281096-128281375(-)$1	279	140	169	12.6318
GUGGUGACCCUGUCAUGUACAGGAGGGAC	chr19:50363569-50363797(+)$1	228	28	57	11.8653
CCAAAAUGGAUCAAAAUGUUUGUUUUGGA	chr3:186503952-186504201(+)$1	249	2	31	11.0973
AAGAGUCUCUGAGCUUUUCUCUGAGGAUC	chr6:31805118-31805349(+)$1	231	150	179	11.2511
UCUCCUUUUGAUUGUUAAAAUCAAAAGGA	chr6:160163034-160163315(+)$1	281	180	209	12.3020
CCGACUUCUGGUCCCGCAGGCCCCCGAGG	chr12:132393648-132393923(+)$1	275	13	42	13.6481
AGAUGACCCUGCUUUCUUGGUCCUGUUAA	chr2:99226385-99226638(+)$1	253	73	102	14.3924
CAGCAUCUGAACCGGGAAGGUGAGGGUGU	chr6:160506072-160506302(+)$1	230	127	156	14.5470
UUCUGCAGAAGGAUGCCUUCCUUGUGUUC	chr20:47585706-47585968(+)$1	262	23	52	12.3481
GCCAUGUACAUGGCCCUUCCGUGUACAUG	chrX:23802297-23802548(+)$1	251	131	160	14.5793
UGUCCCCGCGGCGUCGUGCGCUCUGGGGA	chr8:121824525-121824766(-)$1	241	195	224	10.3715
GUGUGGAGUCACUCGUGCAGUGCUUCCAG	chr20:62658987-62659232(+)$1	245	177	206	12.1095
UCUCUGAGCAAGUGUGGGGCAAGCUGGAG	chr7:149318171-149318454(-)$1	283	225	254	12.3215
AGGUGAGAGGCCCUCGCUGGGCGAGCUCA	chr1:11710381-11710614(-)$1	233	90	119	13.7009
CAGAUCCUUAGGAACAGCUCACCAGGAAG	chr22:38363092-38363386(+)$1	294	200	229	11.7777
GGGCCUGGGGAGGAGCGGCCUGCGGAGGG	chr13:50571222-50571518(+)$1	296	222	251	13.7749
CCCCUUCAUGGUGAGUGUGCCAGCAGGGG	chr7:100161761-100162018(+)$1	257	155	184	10.0916
ACCACUCUAAAGACGAUUUCUUUCUUAGG	chr6:31699839-31700098(-)$1	259	183	212	16.0427
UAAUUCAAAUAUGUAUUUCAUAUUUGAAA	chr14:36240011-36240259(-)$1	248	117	146	11.7259
UGUUUCCACAGCUGAAAGGGUGAAGCAAG	chr2:88999446-88999714(+)$1	268	69	98	14.9645
GCUUUUUUUUAGGCUUUUUUUACAGAAAA	chr8:25257401-25257659(+)$1	258	13	42	14.1388
CACUUCGAUCAGCUCCGUGAGUGCGGGAG	chr3:50310999-50311225(+)$1	226	62	91	10.6404
CCCAGGUUCUGGUCUUUAgcuuuggaauc	chr1:16474726-16474980(-)$1	254	150	179	12.5289
CAUGGAGGUGGGAAAAGGCUCCCUCUAUC	chr17:73231141-73231424(+)$1	283	185	214	11.2000
GUGGUCCUAGAGCCCUGGCUGCACGGACU	chr12:57538790-57539019(+)$1	229	170	199	9.9516
CGGUCAACCAGGUACCCGCCCGCCGCCGC	chr6:112408288-112408538(-)$1	250	92	121	9.5568
CCUUCCCACAUCCAAGGGAUUGAGUGGGA	chr14:24110888-24111186(+)$1	298	108	137	10.1667
GUGACCUGACUGAUGCCUUCGUGGAGGUU	chr12:22696854-22697115(-)$1	261	95	124	14.9879
GGCUGGUGCAGGCGCUGGGCCUGUCCAAC	chr1:46033712-46033935(+)$1	223	45	74	10.6779
CAAACCUAAUAGGUUUUACUUAAAGGGUU	chr16:70566409-70566659(+)$1	250	167	196	11.0739
GUGAGCGGGAGGCCCGGUGCCUCGGGACU	chr20:62371781-62372024(+)$1	243	103	132	12.0995
GGAAGGCGCUGGUCUAGCCCAGAACCUCC	chr17:42580549-42580782(-)$1	233	117	146	9.7223
GAAGCUGAUGGAGGGAGAACUUGAAGCUU	chr16:72162850-72163065(-)$1	215	40	69	11.5578
uuaacauagaucuguucuaagaauguuac	chr2:203149049-203149337(+)$1	288	204	233	10.7708
CCCCUGGUAAGGAGGCCUUCCCUACCACU	chr3:129117706-129117970(-)$1	264	114	143	12.5359
GUGGUGAUGAGGGCUGAAUCCUCCAGCCA	chr2:128175959-128176220(+)$1	261	178	207	11.9304
CAUAGUUUUACUUCUAAUAAGGCUGACUA	chr2:42543107-42543338(+)$1	231	141	170	14.7898
AGGAAGAUAGUUGACUAUGACUCAUGUUC	chr14:23391261-23391540(-)$1	279	230	259	11.0348
UGGGGGCCACCUGCUGAACAGGGCGCUCA	chr20:3210779-3211035(-)$1	256	214	243	12.4180
GUCUUCGAGGCCUGACUGAGGCUUAGGCA	chr20:3781033-3781286(+)$1	253	118	147	10.5967
UUGGUAACGUUUCUGAUGGACAAUUACCA	chr5:59899075-59899359(-)$1	284	40	69	11.0668
GGGUCUGGGUCUCAUCCAGAGACCCACGG	chr17:38184872-38185129(-)$1	257	135	164	12.6942

#DB
((.((((...((((...))))...)))))	chr20:10629042-10629301(-)$1	1	125	154	10.5107
((((.((((((((.....)))))..))).	chr7:43768879-43769195(-)$1	1	146	175	12.3111
)).(((((.((((.....))))..)))))	chr18:77804178-77804434(+)$1	1	147	176	11.5174
.(((.(((((.((.....))))).)))))	chr17:41113056-41113349(-)$1	1	23	52	10.9097
((.((((((((((.....))))..)))))	chr22:36682619-36682824(-)$1	1	88	117	12.8036
.(((((((((.(((...))))))))))))	chr5:178287023-178287290(+)$1	1	45	74	10.8867
(((((((((((((.....))))....)))	chr15:75093336-75093585(+)$1	1	108	137	12.8520
(((((((.(..(((...)))....).)))	chr10:104118339-104118598(+)$1	1	76	105	10.5498
((((((.(((.((.....)).))))))))	chr17:78120440-78120736(-)$1	1	232	261	12.1196
(((((...(((((.....)))))....))	chr11:72553524-72553794(-)$1	1	146	175	12.4846
.(.(((.(((..(.....)..))).))).	chr5:179198123-179198392(+)$1	1	128	157	12.1388
((((((....(((......)))..)))))	chr20:60734895-60735157(+)$1	1	38	67	11.4714
))))))(.(((((.....))))).)((((	chr2:128281096-128281375(-)$1	1	140	169	12.6318
(.(((..((((((.....))))).)..))	chr19:50363569-50363797(+)$1	1	28	57	11.8653
(((((((((((......))))))))))))	chr3:186503952-186504201(+)$1	1	2	31	11.0973
((((.((((.(((.....))).)))).))	chr6:31805118-31805349(+)$1	1	150	179	11.2511
..(((((((((((.....)))))))))))	chr6:160163034-160163315(+)$1	1	180	209	12.3020
..((((((.((((.....))))...))))	chr12:132393648-132393923(+)$1	1	13	42	13.6481
(..((((...(((.....)))...)))).	chr2:99226385-99226638(+)$1	1	73	102	14.3924
)(((((((..(((.....)))..))))))	chr6:160506072-160506302(+)$1	1	127	156	14.5470
(...(((.(((((.....))))).)))..	chr20:47585706-47585968(+)$1	1	23	52	12.3481
.((((((((((((.....)))))))))))	chrX:23802297-23802548(+)$1	1	131	160	14.5793
((((((((.(((((...))))).))))))	chr8:121824525-121824766(-)$1	1	195	224	10.3715
((.(((((.((((.....)))).))))).	chr20:62658987-62659232(+)$1	1	177	206	12.1095
(((((.(((..((.....))..)))))))	chr7:149318171-149318454(-)$1	1	225	254	12.3215
((.((((..((((.....))))...))))	chr1:11710381-11710614(-)$1	1	90	119	13.7009
(...((((...((.....))...)))).)	chr22:38363092-38363386(+)$1	1	200	229	11.7777
((((((..(.(((.....))).)...)))	chr13:50571222-50571518(+)$1	1	222	251	13.7749
(((((.(.((((......))))).)))))	chr7:100161761-100162018(+)$1	1	155	184	10.0916
(((((((((((((.....)))...)))))	chr6:31699839-31700098(-)$1	1	183	212	16.0427
...((((((((((.....)))))))))).	chr14:36240011-36240259(-)$1	1	117	146	11.7259
((((((....(((.....)))))))))))	chr2:88999446-88999714(+)$1	1	69	98	14.9645
((((((((.((((.....)))).))))))	chr8:25257401-25257659(+)$1	1	13	42	14.1388
((((((.....((((...))))...))))	chr3:50310999-50311225(+)$1	1	62	91	10.6404
((..(((((((((.....)))..))))))	chr1:16474726-16474980(-)$1	1	150	179	12.5289
.(((((((.(((......)))))))))).	chr17:73231141-73231424(+)$1	1	185	214	11.2000
(.(((((...(((....)))....)))))	chr12:57538790-57539019(+)$1	1	170	199	9.9516
((((....(.(((....))).)..)))))	chr6:112408288-112408538(-)$1	1	92	121	9.5568
(.(((((((((((...))))...))))))	chr14:24110888-24111186(+)$1	1	108	137	10.1667
.((((((...(((.....)))...)))))	chr12:22696854-22697115(-)$1	1	95	124	14.9879
((.(((.((((((.....))))))))).)	chr1:46033712-46033935(+)$1	1	45	74	10.6779
(((((((..(((((...)))))..)))))	chr16:70566409-70566659(+)$1	1	167	196	11.0739
.(((((..(((((.....)))))..).))	chr20:62371781-62372024(+)$1	1	103	132	12.0995
(((.((..((((......))))..)))))	chr17:42580549-42580782(-)$1	1	117	146	9.7223
((((((....(((......)))..)))))	chr16:72162850-72163065(-)$1	1	40	69	11.5578
.((((((...(((......))))))))).	chr2:203149049-203149337(+)$1	1	204	233	10.7708
((..(((((.(((.....))).)))))..	chr3:129117706-129117970(-)$1	1	114	143	12.5359
.((((...(((((.....)))))..))))	chr2:128175959-128176220(+)$1	1	178	207	11.9304
))(((((...(((.....)))...)))))	chr2:42543107-42543338(+)$1	1	141	170	14.7898
((((.(((((((......))))...))).	chr14:23391261-23391540(-)$1	1	230	259	11.0348
((((.(((..(((.....)))))).))))	chr20:3210779-3211035(-)$1	1	214	243	12.4180
((((...((((((.....)))))))))))	chr20:3781033-3781286(+)$1	1	118	147	10.5967
(((((((...(((....)))...))))))	chr5:59899075-59899359(-)$1	1	40	69	11.0668
(((((((((((((.....)))))))..))	chr17:38184872-38185129(-)$1	1	135	164	12.6942

#PSSM
e : 0.11	f : 0.11	i : 0.11	c : 0.09	d : 0.07	g : 0.07	[ : 0.05	h : 0.05	b : 0.05	= : 0.05	! : 0.05	" : 0.03	a : 0.03	# : 0.03	: : 0.01	' : 0.01	
f : 0.14	e : 0.12	i : 0.12	c : 0.09	d : 0.09	g : 0.09	= : 0.07	[ : 0.05	" : 0.05	a : 0.03	: : 0.01	! : 0.01	b : 0.01	' : 0.01	h : 0.01	
f : 0.16	e : 0.14	i : 0.12	[ : 0.11	g : 0.09	= : 0.09	d : 0.07	! : 0.05	c : 0.03	" : 0.03	: : 0.01	' : 0.01	h : 0.01	
f : 0.18	e : 0.16	d : 0.12	i : 0.12	= : 0.11	g : 0.09	c : 0.07	" : 0.03	! : 0.03	[ : 0.01	h : 0.01	
f : 0.16	e : 0.14	d : 0.12	i : 0.12	= : 0.11	[ : 0.09	g : 0.09	c : 0.07	# : 0.01	b : 0.01	" : 0.01	
f : 0.14	e : 0.12	d : 0.11	c : 0.11	i : 0.11	= : 0.11	g : 0.09	" : 0.05	b : 0.03	[ : 0.03	! : 0.01	# : 0.01	a : 0.01	
c : 0.11	f : 0.11	d : 0.09	e : 0.09	= : 0.09	g : 0.09	i : 0.07	# : 0.07	! : 0.07	[ : 0.05	" : 0.05	a : 0.03	b : 0.01	$ : 0.01	
" : 0.16	c : 0.14	f : 0.09	= : 0.09	! : 0.09	[ : 0.07	# : 0.07	g : 0.07	e : 0.05	i : 0.05	d : 0.03	a : 0.01	$ : 0.01	
" : 0.14	e : 0.14	[ : 0.11	c : 0.09	= : 0.09	f : 0.07	d : 0.07	! : 0.07	a : 0.05	# : 0.05	g : 0.03	i : 0.01	$ : 0.01	
d : 0.20	e : 0.16	" : 0.14	= : 0.09	c : 0.07	! : 0.07	[ : 0.07	# : 0.05	f : 0.05	i : 0.01	$ : 0.01	g : 0.01	
c : 0.33	d : 0.22	e : 0.16	= : 0.07	[ : 0.05	! : 0.05	f : 0.03	" : 0.01	$ : 0.01	g : 0.01	
c : 0.37	d : 0.24	e : 0.16	b : 0.07	= : 0.05	f : 0.03	! : 0.01	o : 0.01	g : 0.01	
c : 0.35	d : 0.18	e : 0.16	o : 0.09	b : 0.07	= : 0.05	f : 0.03	a : 0.01	g : 0.01	
n : 0.66	o : 0.14	m : 0.05	d : 0.03	c : 0.03	e : 0.03	l : 0.01	
n : 0.66	o : 0.14	l : 0.11	m : 0.05	d : 0.01	
n : 0.66	o : 0.14	l : 0.12	m : 0.05	
n : 0.66	o : 0.14	l : 0.11	m : 0.05	d : 0.01	
n : 0.66	o : 0.12	c : 0.09	d : 0.03	e : 0.03	= : 0.01	l : 0.01	
c : 0.31	d : 0.24	e : 0.16	b : 0.07	= : 0.07	o : 0.05	f : 0.03	a : 0.01	g : 0.01	
c : 0.37	d : 0.24	e : 0.16	b : 0.07	= : 0.07	f : 0.03	2 : 0.01	g : 0.01	
c : 0.29	d : 0.22	e : 0.16	= : 0.07	3 : 0.05	4 : 0.03	] : 0.03	2 : 0.03	f : 0.03	i : 0.01	g : 0.01	
d : 0.20	e : 0.16	3 : 0.14	c : 0.12	= : 0.07	] : 0.05	2 : 0.05	i : 0.03	4 : 0.03	g : 0.03	f : 0.03	a : 0.01	
3 : 0.22	2 : 0.16	e : 0.14	c : 0.09	= : 0.07	4 : 0.05	] : 0.05	f : 0.05	i : 0.03	a : 0.03	g : 0.03	d : 0.01	
3 : 0.18	2 : 0.18	] : 0.09	g : 0.09	i : 0.07	4 : 0.07	c : 0.07	= : 0.07	f : 0.07	d : 0.03	e : 0.03	
f : 0.14	e : 0.11	g : 0.11	i : 0.09	= : 0.09	3 : 0.09	d : 0.07	2 : 0.05	a : 0.05	c : 0.05	b : 0.03	4 : 0.03	] : 0.03	
f : 0.16	i : 0.14	d : 0.11	e : 0.11	c : 0.09	g : 0.09	= : 0.09	b : 0.03	4 : 0.03	2 : 0.03	] : 0.01	3 : 0.01	a : 0.01	h : 0.01	
f : 0.18	i : 0.14	c : 0.12	e : 0.12	d : 0.11	g : 0.09	= : 0.09	2 : 0.03	] : 0.03	4 : 0.01	h : 0.01	
f : 0.18	i : 0.14	d : 0.12	e : 0.12	c : 0.11	= : 0.11	g : 0.09	] : 0.03	3 : 0.01	4 : 0.01	h : 0.01	
f : 0.16	i : 0.14	e : 0.11	d : 0.11	g : 0.09	= : 0.09	c : 0.07	4 : 0.07	] : 0.05	3 : 0.03	8 : 0.01	h : 0.01	

#score	652.2412250901665
#seq	54
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_transcript_m1_run1.txt

#BEAR
ffffwwwwwwwwwwwwwwffff	chr2:232326583-232326830(-)$1	247	212	234	21.8626
eeeewwwwwwwwwwwwwweeee	chr9:136799233-136799477(-)$1	244	101	123	22.8782
hhhhhwwwwwwwwwwwwwwhhh	chr8:48805692-48805933(-)$1	241	33	55	20.7508
fffffuuuuuuuuuuuufffff	chr14:54421088-54421339(-)$1	251	101	123	22.5778
[ddddvvvvvvvvvvvvvdddd	chr5:150485842-150486141(-)$1	299	135	157	22.9966
:eeeeettttttttttteeeee	chr11:2152651-2152857(-)$1	206	96	118	21.0358
eyyyyyyyyyyyyyyyyeeeee	chr6:2376647-2376975(+)$1	328	143	165	19.5546
fffffvvvvvvvvvvvvvffff	chr22:47555523-47555925(+)$1	402	124	146	22.9065
#ddddtttttttttttdddddd	chr7:98544176-98544489(+)$1	313	218	240	20.7181
eeeeevvvvvvvvvvvvveeee	chr11:2159523-2159738(-)$1	215	149	171	23.9940
ggggggtttttttttttggggg	chr8:33308390-33308657(-)$1	267	67	89	21.6017
gggggvvvvvvvvvvvvvgggg	chr16:88541643-88541900(+)$1	257	150	172	23.6643
eeeeeuuuuuuuuuuuueeeee	chr11:2153347-2153572(-)$1	225	122	144	23.7066
fffffuuuuuuuuuuuufffff	chrX:53613674-53613914(-)$1	240	198	220	22.5778
cccwwwwwwwwwwwwwwccc]b	chr7:157612012-157612305(-)$1	293	213	235	21.2185
"""bbuuuuuuuuuuuubb333	chr11:2153190-2153400(-)$1	210	114	136	22.3955
eeeeeuuuuuuuuuuuueeeee	chr1:249151582-249151903(-)$1	321	146	168	23.7066
eeeeevvvvvvvvvvvvveeee	chr1:12645901-12646143(-)$1	242	45	67	23.9940
fffffftttttttttttfffff	chr16:87394389-87394705(-)$1	316	226	248	20.9840
ggggguuuuuuuuuuuuggggg	chr4:39459591-39459905(-)$1	314	69	91	23.3276
eeeeeuuuuuuuuuuuueeeee	chr11:2153293-2153524(-)$1	231	74	96	23.7066
:eeeeettttttttttteeeee	chr11:2152663-2152869(-)$1	206	108	130	21.0358
ff[bbvvvvvvvvvvvvvbb]f	chr21:46904107-46904396(+)$1	289	76	98	22.6680
ddddwwwwwwwwwwwwwwdddd	chr11:2153257-2153463(-)$1	206	48	70	21.8783
ddcccuuuuuuuuuuuuccc]d	chr21:44083640-44083922(+)$1	282	192	214	23.2107
gggggvvvvvvvvvvvvvgggg	chr10:382656-382942(-)$1	286	221	243	23.6643
eeeewwwwwwwwwwwwwweeee	chr22:47400520-47400838(+)$1	318	129	151	22.8782
dddyyyyyyyyyyyyyyyyddd	chr16:46949233-46949466(+)$1	233	16	38	19.8411
ee!!auuuuuuuuuuuua22ee	chr12:121416018-121416288(-)$1	270	32	54	23.3063
c[cccwwwwwwwwwwwwwwccc	chr17:94650-94889(-)$1	239	176	198	22.1790
ddddwwwwwwwwwwwwwwdddd	chr13:113766723-113766967(+)$1	244	10	32	21.8783
eeeeettttttttttteeeeef	chr11:2153487-2153693(-)$1	206	7	29	21.8656
ddd[bbtttttttttttbb]dd	chr17:75464845-75465094(+)$1	249	79	101	20.8470
""cccwwwwwwwwwwwwwwccc	chr11:93465252-93465486(-)$1	234	57	79	22.0468
eeeeeuuuuuuuuuuuueeeee	chr16:31198108-31198440(+)$1	332	60	82	23.7066
eyyyyyyyyyyyyyyyyeeeee	chr4:433587-433859(-)$1	272	130	152	19.5546
ddddwwwwwwwwwwwwwwdddd	chr22:48979973-48980311(+)$1	338	208	230	21.8783
gggggvvvvvvvvvvvvvgggg	chr16:279078-279345(-)$1	267	211	233	23.6643
f!!bbuuuuuuuuuuuubb22f	chr22:47399865-47400117(+)$1	252	85	107	22.1911
""cccuuuuuuuuuuuuccc33	chr3:126258079-126258356(+)$1	277	197	219	23.1940
fffffuuuuuuuuuuuufffff	chr17:77966370-77966616(-)$1	246	123	145	22.5778
eeeeevvvvvvvvvvvvveeee	chr22:35740168-35740478(+)$1	310	29	51	23.9940
eeeeettttttttttteeeee4	chr11:2153983-2154189(-)$1	206	82	104	21.8147
bb[bbuuuuuuuuuuuubbbb:	chr4:1218604-1218893(-)$1	289	126	148	20.4221
:eeeeettttttttttteeeee	chr11:2152644-2152848(-)$1	204	87	109	21.0358
d[cccvvvvvvvvvvvvvccc]	chr7:158134476-158134707(-)$1	231	69	91	23.5239
cc[ccctttttttttttccc]c	chr16:31198644-31198889(+)$1	245	40	62	21.9339
cc[bbtttttttttttbb]ccc	chr20:61451920-61452172(+)$1	252	49	71	20.9425
gggggvvvvvvvvvvvvvgggg	chr19:33948817-33949111(-)$1	294	172	194	23.6643
=====uuuuuuuuuuuu=====	chr11:2152298-2152502(-)$1	204	69	91	23.6933
eeeeevvvvvvvvvvvvveeee	chr10:128813057-128813366(+)$1	309	101	123	23.9940
ee[bbuuuuuuuuuuuubbeee	chr19:47994557-47994840(-)$1	283	108	130	23.1582
!!cccuuuuuuuuuuuuccc]h	chr22:35738478-35738726(+)$1	248	91	113	23.3250
eeeeeuuuuuuuuuuuueeeee	chr11:2153377-2153580(-)$1	203	130	152	23.7066
=====uuuuuuuuuuuu=====	chr11:2152334-2152542(-)$1	208	109	131	23.6933
[dddduuuuuuuuuuuudddd]	chr17:1580759-1580998(-)$1	239	145	167	22.6685
eeeeeuuuuuuuuuuuueeeee	chr21:46950062-46950363(-)$1	301	71	93	23.7066
iiiiivvvvvvvvvvvvviiii	chr3:48459389-48459632(-)$1	243	58	80	23.6808
ffffwwwwwwwwwwwwwwffff	chr9:136802221-136802497(-)$1	276	41	63	21.8626
iiiiivvvvvvvvvvvvviiii	chr2:134878269-134878542(+)$1	273	157	179	23.6808
ddddwwwwwwwwwwwwwwdddd	chr11:2153241-2153446(-)$1	205	31	53	21.8783
e[cccvvvvvvvvvvvvvccc]	chr3:185637074-185637362(-)$1	288	249	271	23.6599
dddyyyyyyyyyyyyyyyyddd	chr16:81504421-81504671(+)$1	250	112	134	19.8411
"""bbuuuuuuuuuuuubb333	chr11:2153209-2153417(-)$1	208	131	153	22.3955
hhhhhvvvvvvvvvvvvvhhhh	chr22:47553941-47554223(+)$1	282	88	110	21.9072
=====uuuuuuuuuuuu=====	chr11:2152370-2152608(-)$1	238	175	197	23.6933
iicccwwwwwwwwwwwwwwccc	chr11:62283977-62284242(-)$1	265	89	111	22.2040
=====uuuuuuuuuuuu=====	chr9:116968090-116968351(+)$1	261	32	54	23.6933

#otherMatches

#Seq PSSM
UGUCACUCCAGGCAAAAAGGCA	chr2:232326583-232326830(-)$1	247	212	234	21.8626
UUGUCAUUCAUUUUCUAAACAG	chr9:136799233-136799477(-)$1	244	101	123	22.8782
GGUGUCUCUUUUCUCAUCAACA	chr8:48805692-48805933(-)$1	241	33	55	20.7508
GGUUUAAAAAAUAAGGGAAGCC	chr14:54421088-54421339(-)$1	251	101	123	22.5778
GUGUGAUGUGAUCUUUUCCACA	chr5:150485842-150486141(-)$1	299	135	157	22.9966
cUCAUGCGCAGCACAUACAUGA	chr11:2152651-2152857(-)$1	206	96	118	21.0358
acacacaccauaccacauguau	chr6:2376647-2376975(+)$1	328	143	165	19.5546
gcacaccauauacacacaugug	chr22:47555523-47555925(+)$1	402	124	146	22.9065
uggcaucuguuacuccugccuc	chr7:98544176-98544489(+)$1	313	218	240	20.7181
GUCGCACAUUCGGCCCCCGCGA	chr11:2159523-2159738(-)$1	215	149	171	23.9940
cacacauacacCUCCUUUGUGU	chr8:33308390-33308657(-)$1	267	67	89	21.6017
CUCCUAUGACGUGGAGCCAGGA	chr16:88541643-88541900(+)$1	257	150	172	23.6643
GCAUGAAAACCAAAAUCCAUGC	chr11:2153347-2153572(-)$1	225	122	144	23.7066
UUUCGUUUCUAUUUCCCUGGGA	chrX:53613674-53613914(-)$1	240	198	220	22.5778
UCCUAAUUGACGCUGACGGAUG	chr7:157612012-157612305(-)$1	293	213	235	21.2185
acagcacacacacaaacgcaca	chr11:2153190-2153400(-)$1	210	114	136	22.3955
UCUCCAGGGUAAGAGGAGGAGA	chr1:249151582-249151903(-)$1	321	146	168	23.7066
CUCCCCCUACCAGUCACUGGGA	chr1:12645901-12646143(-)$1	242	45	67	23.9940
GAAGGGACAAUGUUCACCCCUU	chr16:87394389-87394705(-)$1	316	226	248	20.9840
UUCUUGGAAAGAAAAAAAAGAG	chr4:39459591-39459905(-)$1	314	69	91	23.3276
GCAUGAAAACCAAAAUCCAUGC	chr11:2153293-2153524(-)$1	231	74	96	23.7066
cUCAUGCGCAGCACAUACAUGA	chr11:2152663-2152869(-)$1	206	108	130	21.0358
uaggcacacacaucuccagcau	chr21:46904107-46904396(+)$1	289	76	98	22.6680
UUGGCACGACCCUCACCCCCAA	chr11:2153257-2153463(-)$1	206	48	70	21.8783
GCCUGCCCCAUGUCCCUCAGCG	chr21:44083640-44083922(+)$1	282	192	214	23.2107
cuccaccucuugucccacugga	chr10:382656-382942(-)$1	286	221	243	23.6643
aUCUCUauauacacacucagau	chr22:47400520-47400838(+)$1	318	129	151	22.8782
gcacacagacacccacacaugc	chr16:46949233-46949466(+)$1	233	16	38	19.8411
GCAGCGGAGAGGGACAGGGAGC	chr12:121416018-121416288(-)$1	270	32	54	23.3063
AUGCACACAGUAGCUUACAUGC	chr17:94650-94889(-)$1	239	176	198	22.1790
GAUCACCUCAUACUCACAGAUC	chr13:113766723-113766967(+)$1	244	10	32	21.8783
GAGUCAAAUUGGCCUGGACUUG	chr11:2153487-2153693(-)$1	206	7	29	21.8656
auugaugagaguuugggaugga	chr17:75464845-75465094(+)$1	249	79	101	20.8470
CCACCACCUACAGUAAAAAGGU	chr11:93465252-93465486(-)$1	234	57	79	22.0468
GAGUUUCCAAAAUUCCCAACUC	chr16:31198108-31198440(+)$1	332	60	82	23.7066
UAUCCAACCUUACUCAAGGGUG	chr4:433587-433859(-)$1	272	130	152	19.5546
guacacaccacacgcacaguac	chr22:48979973-48980311(+)$1	338	208	230	21.8783
GCCGGGCCUUUGUCUAAGCCGG	chr16:279078-279345(-)$1	267	211	233	23.6643
acacaccccuacacacaugccu	chr22:47399865-47400117(+)$1	252	85	107	22.1911
CAUGGacacacacacaaccaca	chr3:126258079-126258356(+)$1	277	197	219	23.1940
CCUGCGAUAUAUAUCAGGCAGG	chr17:77966370-77966616(-)$1	246	123	145	22.5778
GAGGCGGCUGCGGGAAAAGCCU	chr22:35740168-35740478(+)$1	310	29	51	23.9940
CUGGGGCUUCUCCUGACCCAGU	chr11:2153983-2154189(-)$1	206	82	104	21.8147
GCCUCACACAGAAAUCAGAGCA	chr4:1218604-1218893(-)$1	289	126	148	20.4221
cUCAUGCGCAGCACAUACAUGA	chr11:2152644-2152848(-)$1	204	87	109	21.0358
CUUAUGGUGAGAAUGUGGGUGU	chr7:158134476-158134707(-)$1	231	69	91	23.5239
AGAUGGGCAAAUAGAAACUAGC	chr16:31198644-31198889(+)$1	245	40	62	21.9339
AGGAGGGAAACAGUAGCUGCUG	chr20:61451920-61452172(+)$1	252	49	71	20.9425
UAUGUACCACACCCAUUGACAU	chr19:33948817-33949111(-)$1	294	172	194	23.6643
CACCCGUAGGGUGGGCGGGGUG	chr11:2152298-2152502(-)$1	204	69	91	23.6933
cuuuugugugaauuagaaaaag	chr10:128813057-128813366(+)$1	309	101	123	23.9940
GGAGUUUUUUUACCAUUGCCUG	chr19:47994557-47994840(-)$1	283	108	130	23.1582
GAAGCUUUGUUUAGUUUGCUGU	chr22:35738478-35738726(+)$1	248	91	113	23.3250
GCAUGAAAACCAAAAUCCAUGC	chr11:2153377-2153580(-)$1	203	130	152	23.7066
CACCCGUAGGGUGGGCGGGGUG	chr11:2152334-2152542(-)$1	208	109	131	23.6933
UGGUUUUCUCUGUGUCCAACUU	chr17:1580759-1580998(-)$1	239	145	167	22.6685
cauggacacacacacacucaug	chr21:46950062-46950363(-)$1	301	71	93	23.7066
UCCUCAGUGCUGCCCUUAGAGG	chr3:48459389-48459632(-)$1	243	58	80	23.6808
UGUUcacacccacacccagaca	chr9:136802221-136802497(-)$1	276	41	63	21.8626
GGGCCAGAGGAUCCAGGAGGCC	chr2:134878269-134878542(+)$1	273	157	179	23.6808
UUGGCACGACCCUCACCCCCAA	chr11:2153241-2153446(-)$1	205	31	53	21.8783
UUGAAGCUCAUGAAAAUAUUCU	chr3:185637074-185637362(-)$1	288	249	271	23.6599
UGUacauacacauaggcacaca	chr16:81504421-81504671(+)$1	250	112	134	19.8411
acagcacacacacaaacgcaca	chr11:2153209-2153417(-)$1	208	131	153	22.3955
UUCUUAGGAACACAAAAAAAGA	chr22:47553941-47554223(+)$1	282	88	110	21.9072
CACCCGUAGGGUGGGCGGGGUG	chr11:2152370-2152608(-)$1	238	175	197	23.6933
UUCCUAUAUAAACUCCAAAGGG	chr11:62283977-62284242(-)$1	265	89	111	22.2040
GCCAUGGUGAUGUGAAGAUGGC	chr9:116968090-116968351(+)$1	261	32	54	23.6933

#DB
((((..............))))	chr2:232326583-232326830(-)$1	1	212	234	21.8626
((((..............))))	chr9:136799233-136799477(-)$1	1	101	123	22.8782
(((((..............)))	chr8:48805692-48805933(-)$1	1	33	55	20.7508
(((((............)))))	chr14:54421088-54421339(-)$1	1	101	123	22.5778
.((((.............))))	chr5:150485842-150486141(-)$1	1	135	157	22.9966
.(((((...........)))))	chr11:2152651-2152857(-)$1	1	96	118	21.0358
(................)))))	chr6:2376647-2376975(+)$1	1	143	165	19.5546
(((((.............))))	chr22:47555523-47555925(+)$1	1	124	146	22.9065
.((((...........))))))	chr7:98544176-98544489(+)$1	1	218	240	20.7181
(((((.............))))	chr11:2159523-2159738(-)$1	1	149	171	23.9940
((((((...........)))))	chr8:33308390-33308657(-)$1	1	67	89	21.6017
(((((.............))))	chr16:88541643-88541900(+)$1	1	150	172	23.6643
(((((............)))))	chr11:2153347-2153572(-)$1	1	122	144	23.7066
(((((............)))))	chrX:53613674-53613914(-)$1	1	198	220	22.5778
(((..............))).)	chr7:157612012-157612305(-)$1	1	213	235	21.2185
...((............))...	chr11:2153190-2153400(-)$1	1	114	136	22.3955
(((((............)))))	chr1:249151582-249151903(-)$1	1	146	168	23.7066
(((((.............))))	chr1:12645901-12646143(-)$1	1	45	67	23.9940
((((((...........)))))	chr16:87394389-87394705(-)$1	1	226	248	20.9840
(((((............)))))	chr4:39459591-39459905(-)$1	1	69	91	23.3276
(((((............)))))	chr11:2153293-2153524(-)$1	1	74	96	23.7066
.(((((...........)))))	chr11:2152663-2152869(-)$1	1	108	130	21.0358
((.((.............)).)	chr21:46904107-46904396(+)$1	1	76	98	22.6680
((((..............))))	chr11:2153257-2153463(-)$1	1	48	70	21.8783
(((((............))).)	chr21:44083640-44083922(+)$1	1	192	214	23.2107
(((((.............))))	chr10:382656-382942(-)$1	1	221	243	23.6643
((((..............))))	chr22:47400520-47400838(+)$1	1	129	151	22.8782
(((................)))	chr16:46949233-46949466(+)$1	1	16	38	19.8411
((..(............)..))	chr12:121416018-121416288(-)$1	1	32	54	23.3063
(.(((..............)))	chr17:94650-94889(-)$1	1	176	198	22.1790
((((..............))))	chr13:113766723-113766967(+)$1	1	10	32	21.8783
(((((...........))))))	chr11:2153487-2153693(-)$1	1	7	29	21.8656
(((.((...........)).))	chr17:75464845-75465094(+)$1	1	79	101	20.8470
..(((..............)))	chr11:93465252-93465486(-)$1	1	57	79	22.0468
(((((............)))))	chr16:31198108-31198440(+)$1	1	60	82	23.7066
(................)))))	chr4:433587-433859(-)$1	1	130	152	19.5546
((((..............))))	chr22:48979973-48980311(+)$1	1	208	230	21.8783
(((((.............))))	chr16:279078-279345(-)$1	1	211	233	23.6643
(..((............))..)	chr22:47399865-47400117(+)$1	1	85	107	22.1911
..(((............)))..	chr3:126258079-126258356(+)$1	1	197	219	23.1940
(((((............)))))	chr17:77966370-77966616(-)$1	1	123	145	22.5778
(((((.............))))	chr22:35740168-35740478(+)$1	1	29	51	23.9940
(((((...........))))).	chr11:2153983-2154189(-)$1	1	82	104	21.8147
((.((............)))).	chr4:1218604-1218893(-)$1	1	126	148	20.4221
.(((((...........)))))	chr11:2152644-2152848(-)$1	1	87	109	21.0358
(.(((.............))).	chr7:158134476-158134707(-)$1	1	69	91	23.5239
((.(((...........))).)	chr16:31198644-31198889(+)$1	1	40	62	21.9339
((.((...........)).)))	chr20:61451920-61452172(+)$1	1	49	71	20.9425
(((((.............))))	chr19:33948817-33949111(-)$1	1	172	194	23.6643
(((((............)))))	chr11:2152298-2152502(-)$1	1	69	91	23.6933
(((((.............))))	chr10:128813057-128813366(+)$1	1	101	123	23.9940
((.((............)))))	chr19:47994557-47994840(-)$1	1	108	130	23.1582
..(((............))).)	chr22:35738478-35738726(+)$1	1	91	113	23.3250
(((((............)))))	chr11:2153377-2153580(-)$1	1	130	152	23.7066
(((((............)))))	chr11:2152334-2152542(-)$1	1	109	131	23.6933
.((((............)))).	chr17:1580759-1580998(-)$1	1	145	167	22.6685
(((((............)))))	chr21:46950062-46950363(-)$1	1	71	93	23.7066
(((((.............))))	chr3:48459389-48459632(-)$1	1	58	80	23.6808
((((..............))))	chr9:136802221-136802497(-)$1	1	41	63	21.8626
(((((.............))))	chr2:134878269-134878542(+)$1	1	157	179	23.6808
((((..............))))	chr11:2153241-2153446(-)$1	1	31	53	21.8783
(.(((.............))).	chr3:185637074-185637362(-)$1	1	249	271	23.6599
(((................)))	chr16:81504421-81504671(+)$1	1	112	134	19.8411
...((............))...	chr11:2153209-2153417(-)$1	1	131	153	22.3955
(((((.............))))	chr22:47553941-47554223(+)$1	1	88	110	21.9072
(((((............)))))	chr11:2152370-2152608(-)$1	1	175	197	23.6933
(((((..............)))	chr11:62283977-62284242(-)$1	1	89	111	22.2040
(((((............)))))	chr9:116968090-116968351(+)$1	1	32	54	23.6933

#PSSM
e : 0.27	f : 0.13	d : 0.13	g : 0.08	c : 0.05	" : 0.05	= : 0.05	: : 0.04	i : 0.04	h : 0.02	[ : 0.02	# : 0.01	b : 0.01	! : 0.01	
e : 0.27	d : 0.16	f : 0.11	g : 0.08	" : 0.05	= : 0.05	c : 0.04	[ : 0.04	i : 0.04	h : 0.02	y : 0.02	! : 0.02	b : 0.01	
e : 0.25	d : 0.14	c : 0.13	f : 0.10	g : 0.08	[ : 0.07	= : 0.05	h : 0.02	y : 0.02	" : 0.02	! : 0.02	i : 0.02	
e : 0.25	c : 0.13	f : 0.10	d : 0.10	b : 0.10	g : 0.08	y : 0.05	= : 0.05	h : 0.02	i : 0.02	w : 0.01	! : 0.01	[ : 0.01	
e : 0.22	w : 0.13	c : 0.13	b : 0.11	g : 0.08	f : 0.07	y : 0.05	= : 0.05	d : 0.04	h : 0.02	i : 0.02	a : 0.01	
u : 0.35	v : 0.23	w : 0.19	y : 0.05	t : 0.05	e : 0.04	g : 0.01	f : 0.01	b : 0.01	c : 0.01	
u : 0.35	v : 0.23	w : 0.19	t : 0.16	y : 0.05	
u : 0.35	v : 0.23	w : 0.19	t : 0.16	y : 0.05	
u : 0.35	v : 0.23	w : 0.19	t : 0.16	y : 0.05	
u : 0.35	v : 0.23	w : 0.19	t : 0.16	y : 0.05	
u : 0.35	v : 0.23	w : 0.19	t : 0.16	y : 0.05	
u : 0.35	v : 0.23	w : 0.19	t : 0.16	y : 0.05	
u : 0.35	v : 0.23	w : 0.19	t : 0.16	y : 0.05	
u : 0.35	v : 0.23	w : 0.19	t : 0.16	y : 0.05	
u : 0.35	v : 0.23	w : 0.19	t : 0.16	y : 0.05	
u : 0.35	v : 0.23	w : 0.19	t : 0.16	y : 0.05	
u : 0.35	v : 0.23	w : 0.19	t : 0.10	y : 0.05	e : 0.02	d : 0.01	b : 0.01	
v : 0.23	e : 0.19	w : 0.17	b : 0.10	c : 0.07	f : 0.05	= : 0.05	d : 0.02	g : 0.02	y : 0.02	a : 0.01	
e : 0.27	f : 0.10	d : 0.10	c : 0.10	b : 0.10	g : 0.08	w : 0.05	= : 0.05	y : 0.02	i : 0.02	2 : 0.01	] : 0.01	h : 0.01	
e : 0.29	c : 0.16	d : 0.13	f : 0.10	g : 0.08	= : 0.05	h : 0.02	3 : 0.02	b : 0.02	2 : 0.02	i : 0.02	] : 0.01	
e : 0.30	d : 0.14	f : 0.10	g : 0.08	c : 0.08	] : 0.07	= : 0.05	3 : 0.04	h : 0.02	i : 0.02	2 : 0.01	b : 0.01	
e : 0.27	f : 0.14	d : 0.14	g : 0.08	c : 0.07	= : 0.05	h : 0.04	3 : 0.04	] : 0.04	i : 0.02	b : 0.01	4 : 0.01	: : 0.01	

#score	1528.0012051164688
#seq	68
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_UTR_m1_run1.txt

#BEAR
d[eeeee"""eeeeeffffffnnnnnffffff]eeeee]e	chrX:152954283-152954576(+)$1	293	133	173	11.9462
ggggg####ccc[ccc!!eeeeellleeeeeccc]cccgg	chr7:5569343-5569620(-)$1	277	122	162	12.1585
eee[bb!!ggggggg[eeeeennnnneeeeeggggggg55	chr22:50013874-50014166(-)$1	292	191	231	11.2294
ffeeeee$$$$$ccc[eeeeellleeeee]ccc4444eee	chr19:2425637-2425864(-)$1	227	16	56	10.1011
!!gggggggccc[ccc[cccccclllccc22ccc]ccccc	chr2:54197770-54198043(-)$1	273	150	190	13.6236
hhhhhhhhiiiiiiiiiddddmmmmdddd]iiiiiiiii:	chr1:12656086-12656359(-)$1	273	199	239	10.4605
=========bbbb!!bb[bbnnnnnbbbb22bb]bb22==	chr7:150777503-150777865(-)$1	362	40	80	10.4550
e[ggggggg[dddd!!abboooooobb]a22dddd]gggg	chr5:154136560-154136852(+)$1	292	86	126	11.5878
####ggggggg!!ccc[ddddnnnnnddddccc]gggggg	chr8:102217356-102217609(-)$1	253	189	229	13.8362
""bb[ggggggg[dddd!!cccmmmmccc22ddddggggg	chr11:47379838-47380108(-)$1	270	191	231	11.2050
ggggg[eeeeedddd!!cccooooooccc>>>>>>>>>>>	chr12:123998044-123998297(-)$1	253	66	106	11.0254
iiiii[eeeee"""bb!!ccclllccc333bb]eeeee]i	chr6:3259155-3259417(+)$1	262	169	209	11.8318
333gggggggeeeeeccc!!ccclllccc22ccc]eeeee	chr20:62330182-62330422(-)$1	240	157	197	11.8176
eeeee[ccc[ddddbb!!ddddmmmmdddd]bb]ddddcc	chr20:31172321-31172553(-)$1	232	91	131	9.8028
!!bb!!ccc[dddd[a[ddddnnnnndddda]dddd4444	chr1:1822247-1822549(-)$1	302	117	157	12.4427
[ggggggg"""eeeee[ddddnnnnndddd]eeeeegggg	chr22:20067968-20068234(+)$1	266	113	153	14.0556
a!!gggggggiiiiiiiii[annnnna]iiiiiiiii333	chr7:1577326-1577614(+)$1	288	100	140	15.4385
ffffff:::iiiiiiiiicccnnnnnccc]iiiiiiiii:	chr19:1881799-1882052(-)$1	253	178	218	10.8270
c]eeeeedddd[==========mmmm==========]ddd	chr16:3767279-3767620(-)$1	341	138	178	12.0677
gg!!a[bb[eeeee[bb[bboooooobb333bb]eeeeeb	chr7:933171-933479(+)$1	308	256	296	11.9479
:::ccc[a"""ggggggg!!ccclllccc22ggggggg33	chr19:19739423-19739658(-)$1	235	4	44	11.1110
ffffffffffaggggggg[bbnnnnnbb]ggggggg]a]f	chr20:361825-362062(+)$1	237	70	110	12.3742
!!ccc[a[ddddbb####ddddmmmmdddd4444bb]ddd	chr12:109124817-109125064(-)$1	247	103	143	9.8863
ffff"""==========[aqqqqqqqqa]==========3	chr19:1881951-1882179(-)$1	228	53	93	11.4230
bbeeeee[eeeee[bb!!bboooooobb]bb]eeeee]ee	chr16:1429419-1429665(-)$1	246	1	41	11.3190
a]ddddccc[===========nnnnn===========22c	chr22:50016293-50016538(-)$1	245	197	237	14.4327
:ffffff[bb[eeeeeddddoooooodddd]eeeee]bb]	chr19:1852839-1853083(-)$1	244	105	145	10.4944
!!eeeee[ffffff[a[ddddmmmmdddd]a]ffffff]e	chr19:2270264-2270523(+)$1	259	39	79	11.0604
g:ggggggg####gggggggooooooggggggg4444ggg	chr4:78078310-78078634(+)$1	324	99	139	12.9756
gggggg!!ccc!!eeeeerrrrrrrrreeeee]ccc]ggg	chr16:29677290-29677574(+)$1	284	200	240	10.6643
:::eeeee$$$$$ccc[cccooooooccc]ccc22eeeee	chr2:97535532-97535817(-)$1	285	88	128	9.6951
ddd:ffffff[eeeee"""bbnnnnnbb333eeeeeffff	chr19:2425978-2426265(-)$1	287	158	198	10.8238
[a[============"""ccc[bb[bb[ccc"""======	chr5:138629494-138629738(+)$1	244	7	47	10.7302
gggggg####bb[a[ccc[bbnnnnnbb]ccc]a]bb444	chr7:106809415-106809700(+)$1	285	130	170	13.0159
ddd[ccc[bb!!a[iiiiiiiiillliiiiiiiii]a22b	chr1:155532127-155532412(-)$1	285	90	130	11.9481
iii!!bb####eeeeeeeeeennnnneeeee22eeeee66	chr17:7476586-7476837(+)$1	251	102	142	10.7742
[dddd####ccc[ccc!!ddddllldddd22cccccc333	chr7:50860202-50860449(-)$1	247	198	238	13.0472
=======!!ffffff!!fffffflllffffff333fffff	chr17:80109773-80110027(-)$1	254	123	163	10.7277
FFFFeeeee!!eeeee[cccooooooccc]eeeee333ee	chr19:18547928-18548199(-)$1	271	26	66	11.8928
eeeee===========!!bbqqqqqqqqbb333=======	chr19:1418628-1418878(+)$1	250	160	200	11.1874
!ffffffbb[ggggggg[ccc[allla]ccc]ggggggg]	chr12:123997687-123998013(-)$1	326	170	210	12.7844
a[eeeee!!bb[bb[a[eeeeellleeeee]a]bb]bb22	chr9:126030503-126030863(-)$1	360	170	210	10.5634
==!!dddd[ggggggg!!aaooooooa]a22gggggggdd	chr17:62501964-62502237(-)$1	273	107	147	14.0771
cc"""ccc==========[bbnnnnnbb]==========]	chr12:109124505-109124766(-)$1	261	58	98	15.0719
d[a[============a[ccca!!dddd[a!!========	chr9:139560092-139560350(+)$1	258	126	166	11.4363
=======[bb[a[bb[a[cccoooooocccabba]bb]==	chr1:182360387-182360648(-)$1	261	182	222	13.0963
!!eeeeeiiiiiiiii!!cccnnnnnccc22iiiiiiiii	chr5:176738850-176739091(-)$1	241	158	198	16.4810
!!eeeee"""dddd[bb[ddddoooooodddd]bbdddd3	chr7:100027292-100027557(+)$1	265	180	220	11.0013
ccceeeeeeeeee[ccccccooooooccc22ccc]eeeee	chr1:1190003-1190264(-)$1	261	135	175	13.1847
dddd[iiiiiiiiigggggggnnnnnggggggg]iiiiii	chr4:140098113-140098347(-)$1	234	38	78	13.7473
[a[============"""ccc[bb[bb[ccc"""======	chr5:138629435-138629694(+)$1	259	66	106	10.7302
ffffff!!bbccc[a[a[cccnnnnnccca]a]ccc]bb2	chr12:31478334-31478596(-)$1	262	49	89	12.9543
c[eeeee####dddda[ddddmmmmdddd22a]dddd444	chr19:1104622-1104880(+)$1	258	193	233	11.8031
hhhhhhh[ccc[bb[ccc[bboooooobb]cccbbccchh	chr11:612025-612294(+)$1	269	93	133	10.2684
eeeeebb!!ggggggg[ddddnnnnndddd]ggggggg]b	chr22:20004133-20004419(-)$1	286	234	274	13.7188
ggg[eeeee[eeeee####bboooooobb22eeeeeeeee	chr10:43891997-43892284(-)$1	287	41	81	12.8280
ggggggg[==========[bbmmmmbb]==========]g	chr3:14989009-14989269(-)$1	260	153	193	14.0479
gg!!eeeeeffffff!!ddddnnnnnddddffffff22ee	chr15:64752843-64753080(+)$1	237	179	219	11.8613

#otherMatches

#Seq PSSM
gccgccccucguccgccgcugccgcucgguggccgggccg	chrX:152954283-152954576(+)$1	293	133	173	11.9462
UUGGGGCCUGGCUUCCUGCCGCGCGCCGCGGGGACGCCUC	chr7:5569343-5569620(-)$1	277	122	162	12.1585
gagaacguguuggguacauggauuugcuGUGACCUGACCU	chr22:50013874-50014166(-)$1	292	191	231	11.2294
GGAgugacccuagugacuuccccugggagccgcauuuuca	chr19:2425637-2425864(-)$1	227	16	56	10.1011
GAGAgcccccggagccgggcgggcgucccgagccgggccc	chr2:54197770-54198043(-)$1	273	150	190	13.6236
CUGGCUGCGUGUUGCAAUGUCUGGUGGCGUUUGCAGCAUC	chr1:12656086-12656359(-)$1	273	199	239	10.4605
CCCGGGCCCCGAGACCGACUGAGGGAGCGACCUGCGCAGG	chr7:150777503-150777865(-)$1	362	40	80	10.4550
gggcccgcggcgcggcccgAGUGUGCGUGUGCGCGGCGCG	chr5:154136560-154136852(+)$1	292	86	126	11.5878
ACAGCCGCCGGUCAGCUGCCAGAGUGUGGCGCUCCCGGUG	chr8:102217356-102217609(-)$1	253	189	229	13.8362
ugugggugugccugugugAGCAGGGAUGUGAGCAUGGUAU	chr11:47379838-47380108(-)$1	270	191	231	11.2050
CGGGGAGGCCUGGUCUUUCCGUAUCAGGAUAAAAUGACUU	chr12:123998044-123998297(-)$1	253	66	106	11.0254
GCAGCUGGUCCACUUCCACGUCAUGCGGCUGACGGACUCG	chr6:3259155-3259417(+)$1	262	169	209	11.8318
UACCCUCCCAGGCCCUGACCCUCGCUGAGCUUCAGGGGCC	chr20:62330182-62330422(-)$1	240	157	197	11.8176
GUUCUGGGUGCGCUCCAAGGGCUUCCGCCUGGGCAGCGGC	chr20:31172321-31172553(-)$1	232	91	131	9.8028
GGGGAGCGGGGCCGGGAGUGGAGCAGCCGCCGCGGCGGGA	chr1:1822247-1822549(-)$1	302	117	157	12.4427
GGACGCCUccggggcuggggggcgggccccgggcccAGGC	chr22:20067968-20068234(+)$1	266	113	153	14.0556
GGGCUCCCUGGCCCAGGGUGUGGGGAGGGUCCUGGGCUGG	chr7:1577326-1577614(+)$1	288	100	140	15.4385
CCGCCUCCCGGGGGUGCCCAGCUGGACUGUGGCACCCCCA	chr19:1881799-1882052(-)$1	253	178	218	10.8270
CUGUGGGGCCGCCGCCUGCGGCCUUUGCUGCGGGCGCCGG	chr16:3767279-3767620(-)$1	341	138	178	12.0677
CCGGCGGGACCCCAUGUACAACGAGGUGAGAGCUUGGGGC	chr7:933171-933479(+)$1	308	256	296	11.9479
GAAGCCAcagggcagggcagggcagggccgggcUUUGCAG	chr19:19739423-19739658(-)$1	235	4	44	11.1110
CUCUGGGCGUCUGCGUGUUGCCGCGUGUUACACGCACGCA	chr20:361825-362062(+)$1	237	70	110	12.3742
GGGGAGCGUGAAGCAGGGUCCCUGUGGGGAGGAGGCUUUC	chr12:109124817-109125064(-)$1	247	103	143	9.8863
GCGUUUCGGGGGUGUGGGCGGGGCUGGGGUCAUAUCCCCU	chr19:1881951-1882179(-)$1	228	53	93	11.4230
gcggggcggccgcggACCGUGAGUCAGCAUUGGCGGCGGC	chr16:1429419-1429665(-)$1	246	1	41	11.3190
CUGCCUUAGUGGGGUGGGUGGAGCUGCUGCCCACCUCUCC	chr22:50016293-50016538(-)$1	245	197	237	14.4327
UUCCAGAACCGUCCUGCCUCUCGCUUGGGGACAGGGGGGC	chr19:1852839-1853083(-)$1	244	105	145	10.4944
CGGCCGUCGAGCGUGCGCUGCGGGAGCGGGGAGCGCUUUG	chr19:2270264-2270523(+)$1	259	39	79	11.0604
GGUGCGGCGGUGGGCUGGUCUUCCGCGGCCGGCGUUGCGC	chr4:78078310-78078634(+)$1	324	99	139	12.9756
UGGGGUGGACAUAGCAGAAAAUCUAACUCUGUCUGUAGCC	chr16:29677290-29677574(+)$1	284	200	240	10.6643
gaggccgcggagggcuggcgggcgagcgcgggcaggcggc	chr2:97535532-97535817(-)$1	285	88	128	9.6951
GCCUGGGCAGUCACGUGGUGGUCACUCCUGGAUGUGCUGU	chr19:2425978-2426265(-)$1	287	158	198	10.8238
UGAAGCGGGUAAGAGUCGGGGUCGGGUGGCUGGGGGUUCU	chr5:138629494-138629738(+)$1	244	7	47	10.7302
CGGUCGGAGAGGGGGUACGAGAGCUGCUGGUGGUGUUGUC	chr7:106809415-106809700(+)$1	285	130	170	13.0159
GAGUGGAAGGUUGAGGGGGGCGCUAGGCGCCCUUCGCUCC	chr1:155532127-155532412(-)$1	285	90	130	11.9481
UUCAGUGUGCUGGUUUUCUUGACGGCCAGGACUGAGCCUA	chr17:7476586-7476837(+)$1	251	102	142	10.7742
AGCGGUACCGUUUGCAGAAGGAAAUUUCUGAUGCAACUCU	chr7:50860202-50860449(-)$1	247	198	238	13.0472
GGGCCUGGGAGAUCUGGGGGCCACCCUGGCCUGGGAGAUC	chr17:80109773-80110027(-)$1	254	123	163	10.7277
CCUGGCUGCAGGCGGACCCCGUGGAAGGGUUUCGCGAGGU	chr19:18547928-18548199(-)$1	271	26	66	11.8928
UGCGUGCCUUCAAUCUGCUGUUGUCGCUCGUUAAGAUUGA	chr19:1418628-1418878(+)$1	250	160	200	11.1874
GGGGGUCGGGAGGAGUUUGUGGCUUUGGCACUGACUUCUG	chr12:123997687-123998013(-)$1	326	170	210	12.7844
ggcgccugcgcggcgggccgucccgggcgggcggcgguua	chr9:126030503-126030863(-)$1	360	170	210	10.5634
GCGGCCGGCGGGGGCUUUGCGGCUUGGACUUGGCCUUUCC	chr17:62501964-62502237(-)$1	273	107	147	14.0771
CCGGGCUCACGUGGGGCCGGGGCGAGCUGGGCCCUGCGUC	chr12:109124505-109124766(-)$1	261	58	98	15.0719
cgcgggcucgggcggcaguggcggcggcgcgugcgcgccc	chr9:139560092-139560350(+)$1	258	126	166	11.4363
UUGCGCUGUGGAUGGAGUGGCGGUGCGGUCCCCUGUGGAG	chr1:182360387-182360648(-)$1	261	182	222	13.0963
cccUGUGUUUGUUGCACCGUGUCAGUUACUUUGUAACAAA	chr5:176738850-176739091(-)$1	241	158	198	16.4810
GGCUAGUAGGGCGCACUUGGCGGGGAGGCGCUUGGGCGCG	chr7:100027292-100027557(+)$1	265	180	220	11.0013
GUCUGGCCUGGCCGUGUGGUGAUGAGGCUUAGCGGGGCCA	chr1:1190003-1190264(-)$1	261	135	175	13.1847
ggcgcgggcgggggucgcugcgcggggcggcgAGCCUCUG	chr4:140098113-140098347(-)$1	234	38	78	13.7473
UGAAGCGGGUAAGAGUCGGGGUCGGGUGGCUGGGGGUUCU	chr5:138629435-138629694(+)$1	259	66	106	10.7302
CCGCGCAGCGGCCGGGGUCGGUGCGUCCGCGUGGGCGCGA	chr12:31478334-31478596(-)$1	262	49	89	12.9543
GGCGGCGGAAGGCCCCAGCGUGCAGGCGCAGGAGGGCGCG	chr19:1104622-1104880(+)$1	258	193	233	11.8031
GGUGGGGUGGCGCGUCCUUGAUAAAUCUCUAGGUGGCCUC	chr11:612025-612294(+)$1	269	93	133	10.2684
GCGCGCCAACGGACCCGGGGAAGCCCUUCUGGGGUCCGAG	chr22:20004133-20004419(-)$1	286	234	274	13.7188
CCGAGCCCGCGCAGGCCCUGGGGCCGACCUUCCUGCCGGG	chr10:43891997-43892284(-)$1	287	41	81	12.8280
gcgcUGGUAGGAGGAGGGCGAAUGUUCUUCUUCCUCUUCC	chr3:14989009-14989269(-)$1	260	153	193	14.0479
gggaccggccgcgcggUGAGUCCGGAGCUUUGUGUGGAGC	chr15:64752843-64753080(+)$1	237	179	219	11.8613

#DB
(.(((((...(((((((((((.....)))))).))))).)	chrX:152954283-152954576(+)$1	1	133	173	11.9462
(((((....(((.(((..(((((...)))))))).)))))	chr7:5569343-5569620(-)$1	1	122	162	12.1585
(((.((..(((((((.(((((.....))))))))))))..	chr22:50013874-50014166(-)$1	1	191	231	11.2294
(((((((.....(((.(((((...))))).)))....)))	chr19:2425637-2425864(-)$1	1	16	56	10.1011
..((((((((((.(((.((((((...)))..))).)))))	chr2:54197770-54198043(-)$1	1	150	190	13.6236
))))))))(((((((((((((....)))).))))))))).	chr1:12656086-12656359(-)$1	1	199	239	10.4605
(((((((((((((..((.((.....))))..)).))..))	chr7:150777503-150777865(-)$1	1	40	80	10.4550
(.(((((((.((((..(((......)).)..)))).))))	chr5:154136560-154136852(+)$1	1	86	126	11.5878
....(((((((..(((.((((.....))))))).))))))	chr8:102217356-102217609(-)$1	1	189	229	13.8362
..((.(((((((.((((..(((....)))..)))))))))	chr11:47379838-47380108(-)$1	1	191	231	11.2050
(((((.(((((((((..(((......)))...........	chr12:123998044-123998297(-)$1	1	66	106	11.0254
(((((.(((((...((..(((...)))...)).))))).)	chr6:3259155-3259417(+)$1	1	169	209	11.8318
...)))))))((((((((..(((...)))..))).)))))	chr20:62330182-62330422(-)$1	1	157	197	11.8176
(((((.(((.((((((..((((....)))).)).))))))	chr20:31172321-31172553(-)$1	1	91	131	9.8028
..((..(((.((((.(.((((.....))))).))))....	chr1:1822247-1822549(-)$1	1	117	157	12.4427
.(((((((...(((((.((((.....)))).)))))))))	chr22:20067968-20068234(+)$1	1	113	153	14.0556
(..((((((((((((((((.(.....).)))))))))...	chr7:1577326-1577614(+)$1	1	100	140	15.4385
))))))...((((((((((((.....))).))))))))).	chr19:1881799-1882052(-)$1	1	178	218	10.8270
).)))))((((.((((((((((....)))))))))).)))	chr16:3767279-3767620(-)$1	1	138	178	12.0677
((..(.((.(((((.((.((......))...)).))))))	chr7:933171-933479(+)$1	1	256	296	11.9479
...(((.(...(((((((..(((...)))..)))))))..	chr19:19739423-19739658(-)$1	1	4	44	11.1110
))))((((((((((((((.((.....)).))))))).).)	chr20:361825-362062(+)$1	1	70	110	12.3742
..(((.(.((((((....((((....))))....)).)))	chr12:109124817-109125064(-)$1	1	103	143	9.8863
((((...((((((((((.(........).)))))))))).	chr19:1881951-1882179(-)$1	1	53	93	11.4230
(((((((.(((((.((..((......)).)).))))).))	chr16:1429419-1429665(-)$1	1	1	41	11.3190
).))))(((.(((((((((((.....)))))))))))..)	chr22:50016293-50016538(-)$1	1	197	237	14.4327
.((((((.((.(((((((((......)))).))))).)).	chr19:1852839-1853083(-)$1	1	105	145	10.4944
..(((((.((((((.(.((((....)))).).)))))).)	chr19:2270264-2270523(+)$1	1	39	79	11.0604
).(((((((....(((((((......)))))))....)))	chr4:78078310-78078634(+)$1	1	99	139	12.9756
((((((..(((..(((((.........))))).))).)))	chr16:29677290-29677574(+)$1	1	200	240	10.6643
...(((((.....(((.(((......))).)))..)))))	chr2:97535532-97535817(-)$1	1	88	128	9.6951
))).((((((.(((((...((.....))...)))))))))	chr19:2425978-2426265(-)$1	1	158	198	10.8238
.(.((((((((((((...(((.((.((.(((...((((((	chr5:138629494-138629738(+)$1	1	7	47	10.7302
((((((....((.(.(((.((.....)).))).).))...	chr7:106809415-106809700(+)$1	1	130	170	13.0159
(((.(((.((..(.(((((((((...))))))))).)..)	chr1:155532127-155532412(-)$1	1	90	130	11.9481
(((..((....((((((((((.....)))))..)))))..	chr17:7476586-7476837(+)$1	1	102	142	10.7742
.((((....(((.(((..((((...))))..))))))...	chr7:50860202-50860449(-)$1	1	198	238	13.0472
(((((((..((((((..((((((...))))))...)))))	chr17:80109773-80110027(-)$1	1	123	163	10.7277
(((((((((..(((((.(((......))).)))))...))	chr19:18547928-18548199(-)$1	1	26	66	11.8928
((((((((((((((((..((........))...)))))))	chr19:1418628-1418878(+)$1	1	160	200	11.1874
.((((((((.(((((((.(((.(...).))).))))))).	chr12:123997687-123998013(-)$1	1	170	210	12.7844
(.(((((..((.((.(.(((((...))))).).)).))..	chr9:126030503-126030863(-)$1	1	170	210	10.5634
((..((((.(((((((..((......).)..)))))))))	chr17:62501964-62502237(-)$1	1	107	147	14.0771
((...(((((((((((((.((.....)).)))))))))).	chr12:109124505-109124766(-)$1	1	58	98	15.0719
(.(.(((((((((((((.((((..((((.(..((((((((	chr9:139560092-139560350(+)$1	1	126	166	11.4363
(((((((.((.(.((.(.(((......))))))).)).))	chr1:182360387-182360648(-)$1	1	182	222	13.0963
..((((((((((((((..(((.....)))..)))))))))	chr5:176738850-176739091(-)$1	1	158	198	16.4810
..(((((...((((.((.((((......)))).)))))).	chr7:100027292-100027557(+)$1	1	180	220	11.0013
(((((((((((((.((((((......)))..))).)))))	chr1:1190003-1190264(-)$1	1	135	175	13.1847
((((.((((((((((((((((.....))))))).))))))	chr4:140098113-140098347(-)$1	1	38	78	13.7473
.(.((((((((((((...(((.((.((.(((...((((((	chr5:138629435-138629694(+)$1	1	66	106	10.7302
((((((..(((((.(.(.(((.....)))).).))).)).	chr12:31478334-31478596(-)$1	1	49	89	12.9543
(.(((((....(((((.((((....))))..).))))...	chr19:1104622-1104880(+)$1	1	193	233	11.8031
(((((((.(((.((.(((.((......)).))))))))))	chr11:612025-612294(+)$1	1	93	133	10.2684
(((((((..(((((((.((((.....)))).))))))).)	chr22:20004133-20004419(-)$1	1	234	274	13.7188
(((.(((((.(((((....((......))..)))))))))	chr10:43891997-43892284(-)$1	1	41	81	12.8280
(((((((.((((((((((.((....)).)))))))))).)	chr3:14989009-14989269(-)$1	1	153	193	14.0479
((..(((((((((((..((((.....))))))))))..))	chr15:64752843-64753080(+)$1	1	179	219	11.8613

#PSSM
g : 0.15	! : 0.12	d : 0.08	e : 0.08	f : 0.08	= : 0.06	[ : 0.06	c : 0.06	a : 0.05	: : 0.05	h : 0.03	i : 0.03	# : 0.01	" : 0.01	3 : 0.01	b : 0.01	F : 0.01	
g : 0.15	f : 0.12	! : 0.12	[ : 0.08	e : 0.06	= : 0.06	d : 0.06	: : 0.05	h : 0.03	i : 0.03	] : 0.03	a : 0.03	c : 0.03	# : 0.01	" : 0.01	3 : 0.01	b : 0.01	F : 0.01	
e : 0.22	g : 0.17	f : 0.10	d : 0.08	! : 0.06	= : 0.05	h : 0.03	b : 0.03	i : 0.03	: : 0.03	c : 0.03	[ : 0.03	# : 0.01	3 : 0.01	F : 0.01	" : 0.01	a : 0.01	
e : 0.24	g : 0.18	f : 0.10	= : 0.08	[ : 0.06	! : 0.06	d : 0.05	h : 0.03	b : 0.03	c : 0.03	# : 0.01	i : 0.01	: : 0.01	F : 0.01	" : 0.01	
e : 0.29	g : 0.20	= : 0.10	f : 0.10	c : 0.05	d : 0.05	h : 0.03	[ : 0.03	! : 0.03	" : 0.03	b : 0.01	i : 0.01	a : 0.01	
e : 0.24	g : 0.18	= : 0.12	f : 0.10	[ : 0.08	b : 0.05	c : 0.05	# : 0.03	h : 0.03	d : 0.03	! : 0.01	" : 0.01	i : 0.01	
e : 0.27	g : 0.15	= : 0.12	c : 0.08	f : 0.06	# : 0.05	! : 0.05	b : 0.05	h : 0.03	: : 0.01	[ : 0.01	a : 0.01	" : 0.01	d : 0.01	i : 0.01	
g : 0.13	[ : 0.13	e : 0.12	! : 0.10	= : 0.10	# : 0.08	c : 0.06	" : 0.03	d : 0.03	b : 0.03	f : 0.03	i : 0.03	$ : 0.01	h : 0.01	: : 0.01	a : 0.01	
g : 0.13	= : 0.13	e : 0.12	# : 0.08	c : 0.08	b : 0.08	" : 0.06	i : 0.05	f : 0.05	! : 0.05	$ : 0.03	d : 0.03	[ : 0.03	: : 0.01	
g : 0.12	= : 0.12	b : 0.10	[ : 0.10	c : 0.08	e : 0.08	f : 0.08	" : 0.06	i : 0.06	# : 0.06	$ : 0.03	d : 0.03	! : 0.01	
e : 0.13	= : 0.13	c : 0.10	g : 0.10	d : 0.10	i : 0.08	b : 0.05	[ : 0.05	f : 0.05	# : 0.05	$ : 0.03	" : 0.03	! : 0.03	a : 0.01	
e : 0.18	= : 0.13	g : 0.12	d : 0.12	i : 0.08	c : 0.06	! : 0.05	[ : 0.05	f : 0.05	$ : 0.03	b : 0.03	" : 0.01	# : 0.01	a : 0.01	
e : 0.18	= : 0.15	[ : 0.10	g : 0.10	d : 0.10	i : 0.08	b : 0.06	f : 0.05	c : 0.03	! : 0.03	" : 0.01	# : 0.01	$ : 0.01	a : 0.01	
e : 0.17	= : 0.15	g : 0.12	d : 0.12	c : 0.10	i : 0.08	b : 0.06	[ : 0.06	f : 0.05	! : 0.01	" : 0.01	a : 0.01	
e : 0.15	= : 0.15	g : 0.13	c : 0.12	[ : 0.12	i : 0.08	b : 0.06	d : 0.05	! : 0.03	f : 0.03	# : 0.01	a : 0.01	
c : 0.15	= : 0.12	g : 0.12	b : 0.10	e : 0.10	i : 0.08	[ : 0.06	! : 0.06	a : 0.06	# : 0.03	" : 0.03	f : 0.01	d : 0.01	
! : 0.18	[ : 0.17	= : 0.08	g : 0.08	e : 0.06	i : 0.06	a : 0.06	c : 0.06	b : 0.05	" : 0.05	d : 0.03	# : 0.03	f : 0.01	
! : 0.15	d : 0.15	c : 0.13	[ : 0.13	e : 0.08	= : 0.06	g : 0.06	i : 0.05	" : 0.05	f : 0.03	# : 0.03	b : 0.01	
c : 0.24	d : 0.22	e : 0.08	b : 0.08	[ : 0.08	! : 0.05	f : 0.03	i : 0.03	= : 0.03	a : 0.03	g : 0.03	r : 0.01	" : 0.01	# : 0.01	
c : 0.25	d : 0.22	b : 0.18	e : 0.08	f : 0.03	! : 0.03	= : 0.03	g : 0.03	o : 0.01	[ : 0.01	q : 0.01	r : 0.01	i : 0.01	a : 0.01	
c : 0.22	d : 0.20	o : 0.17	b : 0.12	e : 0.08	f : 0.03	= : 0.03	q : 0.03	n : 0.01	a : 0.01	r : 0.01	i : 0.01	g : 0.01	
n : 0.32	o : 0.22	c : 0.06	m : 0.06	d : 0.06	[ : 0.05	e : 0.03	l : 0.03	q : 0.03	= : 0.01	r : 0.01	i : 0.01	f : 0.01	a : 0.01	
n : 0.32	o : 0.24	m : 0.13	l : 0.06	c : 0.05	q : 0.03	b : 0.03	e : 0.01	r : 0.01	i : 0.01	f : 0.01	a : 0.01	! : 0.01	
n : 0.32	o : 0.24	l : 0.18	m : 0.13	q : 0.03	b : 0.03	r : 0.01	! : 0.01	
n : 0.32	o : 0.24	l : 0.15	m : 0.13	q : 0.03	[ : 0.03	e : 0.01	c : 0.01	r : 0.01	d : 0.01	
n : 0.31	o : 0.22	l : 0.12	d : 0.08	b : 0.08	m : 0.06	e : 0.03	q : 0.03	c : 0.01	r : 0.01	
d : 0.22	c : 0.20	b : 0.18	e : 0.08	o : 0.06	a : 0.05	f : 0.03	= : 0.03	q : 0.03	g : 0.03	r : 0.01	i : 0.01	
d : 0.22	c : 0.20	b : 0.15	e : 0.10	] : 0.08	f : 0.03	= : 0.03	g : 0.03	[ : 0.03	3 : 0.01	a : 0.01	i : 0.01	q : 0.01	o : 0.01	
c : 0.25	d : 0.22	e : 0.10	] : 0.08	b : 0.06	3 : 0.05	= : 0.05	f : 0.03	a : 0.03	i : 0.03	g : 0.03	[ : 0.01	
2 : 0.20	d : 0.15	] : 0.12	e : 0.08	= : 0.08	c : 0.08	3 : 0.05	g : 0.05	f : 0.03	i : 0.03	b : 0.03	a : 0.03	> : 0.01	
2 : 0.20	c : 0.13	] : 0.10	e : 0.08	= : 0.08	i : 0.06	f : 0.05	a : 0.05	3 : 0.05	g : 0.05	b : 0.03	> : 0.01	4 : 0.01	! : 0.01	d : 0.01	
c : 0.17	g : 0.12	e : 0.10	i : 0.08	b : 0.08	= : 0.08	] : 0.06	f : 0.05	d : 0.05	a : 0.05	" : 0.03	> : 0.01	4 : 0.01	2 : 0.01	3 : 0.01	! : 0.01	
c : 0.15	] : 0.13	g : 0.13	e : 0.10	= : 0.10	i : 0.08	b : 0.06	d : 0.05	f : 0.03	" : 0.03	3 : 0.03	> : 0.01	4 : 0.01	2 : 0.01	
e : 0.15	c : 0.12	= : 0.12	g : 0.10	i : 0.08	] : 0.08	d : 0.06	4 : 0.05	b : 0.05	f : 0.03	" : 0.03	a : 0.03	> : 0.01	2 : 0.01	3 : 0.01	
e : 0.17	= : 0.15	g : 0.12	] : 0.10	i : 0.10	b : 0.08	d : 0.08	c : 0.05	4 : 0.03	f : 0.03	> : 0.01	2 : 0.01	3 : 0.01	
e : 0.20	= : 0.15	g : 0.13	c : 0.10	i : 0.08	b : 0.06	d : 0.06	] : 0.05	f : 0.05	4 : 0.03	> : 0.01	3 : 0.01	
e : 0.15	g : 0.15	= : 0.13	] : 0.10	i : 0.08	c : 0.06	4 : 0.05	d : 0.05	f : 0.05	b : 0.05	2 : 0.03	> : 0.01	a : 0.01	3 : 0.01	
g : 0.18	e : 0.15	= : 0.12	i : 0.06	2 : 0.06	d : 0.06	c : 0.05	4 : 0.05	3 : 0.05	b : 0.05	f : 0.05	] : 0.03	> : 0.01	a : 0.01	
e : 0.15	g : 0.13	= : 0.13	] : 0.10	i : 0.06	d : 0.06	4 : 0.05	3 : 0.05	2 : 0.05	c : 0.03	b : 0.03	f : 0.03	5 : 0.01	> : 0.01	6 : 0.01	h : 0.01	
e : 0.17	g : 0.13	= : 0.10	3 : 0.08	c : 0.05	i : 0.05	4 : 0.05	d : 0.05	b : 0.05	f : 0.05	] : 0.05	: : 0.03	2 : 0.03	5 : 0.01	> : 0.01	6 : 0.01	h : 0.01	

#score	697.1019364914829
#seq	58
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_UTR_m1_run2.txt

#BEAR
fff!!bb[ddddllldddd]bb22fffff	chr6:31802990-31803199(+)$1	209	78	107	13.2797
[ccc[bb!!ccclllccc22bb]ccc]cc	chr11:122929975-122930185(-)$1	210	90	119	17.8205
========[ccclllccc333========	chr11:75111338-75111683(+)$1	345	59	88	16.4667
fff!!bb[ddddllldddd]bb22fffff	chr6:31802963-31803190(+)$1	227	105	134	13.2797
dd[dddd!!ccclllccc22dddd]dddd	chr11:122929515-122929777(-)$1	262	179	208	12.6778
#===========nnnnn===========2	chr11:18425230-18425459(+)$1	229	118	147	12.4346
f===========nnnnn===========:	chr11:18425140-18425430(+)$1	290	208	237	11.7923
!eeeee####aooooooa4444eeeee]b	chr2:27884874-27885155(-)$1	281	216	245	10.2462
ggggggg!!ccclllccc]gggggggBB}	chr11:126133563-126133839(-)$1	276	116	145	12.1103
[ccc[bb!!ccclllccc22bb]ccc]cc	chr11:122929966-122930175(-)$1	209	80	109	17.8205
eccc[ccc[bblllbb]ccc]ccc333ee	chr17:27047494-27047696(+)$1	202	6	35	10.3284
[ccc[bb!!ccclllccc22bb]ccc]cc	chr11:122929941-122930166(-)$1	225	71	100	17.8205

#otherMatches

#Seq PSSM
UGUGUCGCUGAUGCCAUCACCGCAGCGCU	chr6:31802990-31803199(+)$1	209	78	107	13.2797
uccaccaaaagcuuggcuaaugauggcaa	chr11:122929975-122930185(-)$1	210	90	119	17.8205
GCAGUUUCUUGUUUUGCAUGUGGAACUGU	chr11:75111338-75111683(+)$1	345	59	88	16.4667
UGUGUCGCUGAUGCCAUCACCGCAGCGCU	chr6:31802963-31803190(+)$1	227	105	134	13.2797
ACCCUAGCACUGUCACAGACCUGGAGUCC	chr11:122929515-122929777(-)$1	262	179	208	12.6778
UGGUUGAGAGGUAAUAAAUCUUUCAAUUU	chr11:18425230-18425459(+)$1	229	118	147	12.4346
UGGUUGAGAGGUAAUAAAUCUUUCAAUUU	chr11:18425140-18425430(+)$1	290	208	237	11.7923
agucuagcagcaguguagagaauagauga	chr2:27884874-27885155(-)$1	281	216	245	10.2462
CUGUCUUCAGUGUAGUACAAAGGCAGAGU	chr11:126133563-126133839(-)$1	276	116	145	12.1103
uccaccaaaagcuuggcuaaugauggcaa	chr11:122929966-122930175(-)$1	209	80	109	17.8205
GUGCUACUUUGUUUCAUAGUCGUAUCCCU	chr17:27047494-27047696(+)$1	202	6	35	10.3284
uccaccaaaagcuuggcuaaugauggcaa	chr11:122929941-122930166(-)$1	225	71	100	17.8205

#DB
(((..((.((((...)))).))..)))))	chr6:31802990-31803199(+)$1	1	78	107	13.2797
.(((.((..(((...)))..)).))).))	chr11:122929975-122930185(-)$1	1	90	119	17.8205
((((((((.(((...)))...))))))))	chr11:75111338-75111683(+)$1	1	59	88	16.4667
(((..((.((((...)))).))..)))))	chr6:31802963-31803190(+)$1	1	105	134	13.2797
((.((((..(((...)))..)))).))))	chr11:122929515-122929777(-)$1	1	179	208	12.6778
.(((((((((((.....))))))))))).	chr11:18425230-18425459(+)$1	1	118	147	12.4346
)(((((((((((.....))))))))))).	chr11:18425140-18425430(+)$1	1	208	237	11.7923
.(((((....(......)....))))).)	chr2:27884874-27885155(-)$1	1	216	245	10.2462
(((((((..(((...))).))))))))).	chr11:126133563-126133839(-)$1	1	116	145	12.1103
.(((.((..(((...)))..)).))).))	chr11:122929966-122930175(-)$1	1	80	109	17.8205
((((.(((.((...)).))).)))...))	chr17:27047494-27047696(+)$1	1	6	35	10.3284
.(((.((..(((...)))..)).))).))	chr11:122929941-122930166(-)$1	1	71	100	17.8205

#PSSM
f : 0.25	[ : 0.25	= : 0.08	d : 0.08	# : 0.08	! : 0.08	g : 0.08	e : 0.08	
c : 0.33	= : 0.25	f : 0.16	d : 0.08	e : 0.08	g : 0.08	
c : 0.33	= : 0.25	f : 0.16	[ : 0.08	e : 0.08	g : 0.08	
c : 0.33	= : 0.25	! : 0.16	d : 0.08	e : 0.08	g : 0.08	
[ : 0.33	= : 0.25	! : 0.16	d : 0.08	e : 0.08	g : 0.08	
b : 0.41	= : 0.25	d : 0.08	e : 0.08	g : 0.08	c : 0.08	
b : 0.41	= : 0.25	d : 0.08	# : 0.08	g : 0.08	c : 0.08	
! : 0.41	= : 0.25	[ : 0.16	# : 0.08	c : 0.08	
! : 0.41	d : 0.16	[ : 0.16	= : 0.16	# : 0.08	
c : 0.49	d : 0.16	= : 0.16	# : 0.08	b : 0.08	
c : 0.49	d : 0.16	= : 0.16	a : 0.08	b : 0.08	
c : 0.49	d : 0.16	= : 0.16	o : 0.08	l : 0.08	
l : 0.75	n : 0.16	o : 0.08	
l : 0.75	n : 0.16	o : 0.08	
l : 0.66	n : 0.16	o : 0.08	b : 0.08	
c : 0.49	d : 0.16	n : 0.16	o : 0.08	b : 0.08	
c : 0.49	d : 0.16	n : 0.16	o : 0.08	] : 0.08	
c : 0.58	d : 0.16	= : 0.16	a : 0.08	
2 : 0.33	d : 0.16	= : 0.16	3 : 0.08	4 : 0.08	] : 0.08	c : 0.08	
2 : 0.33	] : 0.16	= : 0.16	3 : 0.08	4 : 0.08	g : 0.08	c : 0.08	
b : 0.41	= : 0.16	3 : 0.08	d : 0.08	4 : 0.08	g : 0.08	] : 0.08	
b : 0.41	= : 0.25	d : 0.08	4 : 0.08	g : 0.08	c : 0.08	
] : 0.25	= : 0.25	2 : 0.16	d : 0.08	e : 0.08	g : 0.08	c : 0.08	
c : 0.33	= : 0.25	2 : 0.16	d : 0.08	e : 0.08	g : 0.08	
c : 0.25	= : 0.25	f : 0.16	] : 0.08	e : 0.08	g : 0.08	3 : 0.08	
c : 0.25	= : 0.25	f : 0.16	d : 0.08	e : 0.08	g : 0.08	3 : 0.08	
] : 0.25	= : 0.25	f : 0.16	d : 0.08	e : 0.08	B : 0.08	3 : 0.08	
c : 0.25	= : 0.25	f : 0.16	d : 0.08	] : 0.08	B : 0.08	e : 0.08	
c : 0.25	f : 0.16	= : 0.08	d : 0.08	2 : 0.08	: : 0.08	b : 0.08	} : 0.08	e : 0.08	

#score	166.07768875649165
#seq	12
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_transcript_m1_run2.txt

#BEAR
===============mmmm===============	chr7:44838711-44839000(+)$1	289	222	256	14.9332
e[ggggggg!!fffffflllffffffggggggg]	chr5:139062279-139062625(+)$1	346	165	199	10.7256
ceeeee!!a"""ccclllccc333a]eeeee22c	chr12:53702468-53702728(-)$1	260	113	147	10.1810
ggggg$$$$$eeeeennnnneeeee22ggggggg	chr8:144895992-144896244(-)$1	252	15	49	10.8306
b!!ggggggg[ddddoooooodddd]ggggggg2	chr19:55556526-55556827(-)$1	301	79	113	13.1491
$$$ggggggg[ddddoooooodddd22ggggggg	chr5:142678167-142678493(-)$1	326	232	266	12.5050
iiiiiiiii[cccrrrrrrrrrccc]iiiiiiii	chr12:57905388-57905642(+)$1	254	19	53	15.0761
c::============nnnnn============:G	chr12:57928764-57929045(-)$1	281	227	261	11.7165
dd!!ccc[bb[eeeeeooooooeeeeebb]ccc>	chr1:226108938-226109201(-)$1	263	61	95	9.9546
iiiiiii[bb[cccooooooccc]bbiiiiiiii	chr16:74678435-74678752(-)$1	317	257	291	15.3878
bb"""ggggggg[bbnnnnnbb]ggggggg333b	chr16:2810001-2810247(+)$1	246	193	227	11.3432
hhhhh[bb[a[ddddoooooodddd]abb]hhhh	chr20:61846836-61847118(-)$1	282	21	55	10.9161
===============nnnnn==============	chr11:45957047-45957354(-)$1	307	45	79	16.7564
===========!!abbmmmmbb]a22========	chr4:1315215-1315511(+)$1	296	145	179	13.4750
ggggggg[bb[bbbbnnnnnbb]bb22bb]gggg	chr4:2935796-2936039(-)$1	243	173	207	11.9615
!ccc####bb[eeeeeooooooeeeeebb4444c	chr1:10165470-10165706(+)$1	236	20	54	10.1580
iiiiiii$$$$$cccnnnnnccc22iiiiiiiii	chr19:2211644-2211902(+)$1	258	195	229	14.4268
==============ppppppp=============	chrX:154279932-154280234(+)$1	302	151	185	14.4831
===========[aooooooa]===========:d	chr20:60906419-60906675(-)$1	256	7	41	14.2462
=========####ccclllccc4444========	chr11:62594575-62594802(-)$1	227	36	70	15.4497
==========!!arrrrrrrrra22=========	chrX:153055171-153055409(-)$1	238	135	169	15.9510
""============bbpppppppbb]========	chr20:39985990-39986290(+)$1	300	108	142	12.3438
ccchhhhhhhha[bboooooobb]a]hhhhhhhh	chr20:44592457-44592760(-)$1	303	87	121	10.7718
[a[iiiiiiiii[bbqqqqqqqqbb]iiiiiiii	chr5:70751543-70751784(+)$1	241	59	93	12.0687
gggg####bb[eeeee"""===========!!ii	chr15:91446280-91446542(+)$1	262	86	120	10.7545
=============rrrrrrrrr============	chr5:130495145-130495418(-)$1	273	46	80	16.2348
==========[cccooooooccc==========e	chr16:30977957-30978205(+)$1	248	132	166	16.6024
dddd===========ppppppp===========]	chr11:67048240-67048538(+)$1	298	256	290	12.9114
[ccchhhhhhhhcccooooooccc]hhhhhhhh2	chr12:72265887-72266150(+)$1	263	151	185	10.7973
ggg[ccc[bb[arrrrrrrrrabbccc]gggggg	chr14:105243019-105243287(-)$1	268	141	175	12.2182
ggg"""ccc[eeeeennnnneeeee]ccc]gggg	chr12:116452937-116453175(-)$1	238	97	131	11.6644
eee[a[iiiiiiiiipppppppiiiiiiiiiaee	chr5:140038796-140039032(+)$1	236	153	187	11.3737
eeeee!!ccc[ddddoooooodddd]ccc]eeee	chr1:182850518-182850796(+)$1	278	114	148	11.1436
chhhhhhhh####bbnnnnnbb4444hhhhhhhh	chr1:228295761-228296011(-)$1	250	95	129	10.9341
iiiiiiiibb!!cccnnnnncccbb]iiiiiiii	chr11:65652979-65653266(-)$1	287	150	184	15.7290
dddd[ccc!!a[cccnnnnnccc22a22ccc]dd	chr19:879440-879695(-)$1	255	18	52	10.8371
[ccc####gggggggrrrrrrrrrggggggg22c	chr4:68406644-68406868(-)$1	224	109	143	11.6821
b[a[ccc[bb!!cccnnnnnccc22bb]ccc]a]	chr19:12825761-12826027(-)$1	266	118	152	11.9677
eeeee[ccc"""cccrrrrrrrrrccc333ccc]	chr19:19232177-19232425(-)$1	248	2	36	11.7453
iiiiiiiii$$$$$bbmmmmbb4444iiiiiiii	chr16:50340782-50341026(+)$1	244	51	85	12.2790
=======[bb!!bbpppppppbb]bb========	chr9:139731686-139731952(+)$1	266	71	105	12.5653
iiia[hhhhhhhh[annnnnahhhhhhhh]a]ii	chr19:45867684-45867932(-)$1	248	9	43	10.4054
iiiiiii[bb[iiiiiiiiiooooooiiiiiiii	chr2:153550948-153551193(-)$1	245	185	219	10.9706
g!!bb[ccca!!cccmmmmccc22a]cccbbggg	chr17:79526278-79526583(-)$1	305	229	263	10.2219
:iiiiiiiii!!cccooooooccc22iiiiiiii	chr2:200776357-200776675(+)$1	318	32	66	15.4061
""ggggggg"""bbrrrrrrrrrbb333gggggg	chr9:131709930-131710266(+)$1	336	27	61	13.7208
!hhhhhhhha!!bboooooobb22a333hhhhhh	chr12:113715890-113716136(+)$1	246	158	192	11.7595
ffff==========ssssssssss==========	chr1:145441165-145441386(+)$1	221	61	95	12.1311
cccggggggg!!cccpppppppccc333gggggg	chr12:62931775-62932049(+)$1	274	163	197	12.2738
[ccc[ccc[bbddddnnnnndddd4444bb]ccc	chr17:71205711-71206017(-)$1	306	190	224	10.3746
==========[ddddnnnnndddd==========	chr21:48068265-48068521(+)$1	256	1	35	15.3782
eeccciiiiiiiiiooooooiiiiiiiii22ccc	chr9:139328001-139328236(-)$1	235	49	83	13.1945
gggggggccc[cccbblllbb]ccc333ccc333	chr16:89629143-89629372(+)$1	229	91	125	11.5871
=====!!bb!!ddddllldddd]bb]========	chr11:65429430-65429682(-)$1	252	26	60	13.0346
iiiiii"""ffffffmmmmffffff333iiiiii	chr19:17313670-17313973(+)$1	303	64	98	11.2608
cc[dddd[gggggggooooooggggggg333ddd	chr1:27105513-27105835(+)$1	322	100	134	11.0945
==============ssssssssss==========	chr3:195789723-195789962(-)$1	239	1	35	13.5539
g[ccc"""bb[cccnnnnnccc]bb333ccc]gg	chr18:33716179-33716437(+)$1	258	124	158	12.4455

#otherMatches

#Seq PSSM
guguguauauauauauuuuuauguauguauauau	chr7:44838711-44839000(+)$1	289	222	256	14.9332
CAGAAGGUGAUGCUUCCGACGGGAGCCGCCUUCC	chr5:139062279-139062625(+)$1	346	165	199	10.7256
UGCUCCCUGACCCCAGACUGGCUGCUGGAGCCCA	chr12:53702468-53702728(-)$1	260	113	147	10.1810
GUUGCCUCCCGAGGUGGCCAACUUCAUGCAGCUG	chr8:144895992-144896244(-)$1	252	15	49	10.8306
GACCGGGGAGCGGGGCUUCCUUCCUUCUCUCUGA	chr19:55556526-55556827(-)$1	301	79	113	13.1491
UGUUUUGCUCCUGAUCUGAUUAUUAAUGAGUAAG	chr5:142678167-142678493(-)$1	326	232	266	12.5050
uuauauguguuuauccuuaugcuaaccauauaug	chr12:57905388-57905642(+)$1	254	19	53	15.0761
CCCUUCUCUGCUGUGACUUACACAGUAGAGGAAG	chr12:57928764-57929045(-)$1	281	227	261	11.7165
AGCAGUGGGUAUGGGAAGCCUGUUCCAACGCACA	chr1:226108938-226109201(-)$1	263	61	95	9.9546
UUUGGGUAUAGGUGCAUUUCCACGUGGCUUAAAG	chr16:74678435-74678752(-)$1	317	257	291	15.3878
GAGGGUUGUCCAGUUAGGAAAGGUGGAUGGGAGU	chr16:2810001-2810247(+)$1	246	193	227	11.3432
CUCGGGGCCGGGGUCGCACGUGACCGCGCGUCGG	chr20:61846836-61847118(-)$1	282	21	55	10.9161
uuuuuuuuuuuuuuuuuAGCAAAAGAAGAAGAGA	chr11:45957047-45957354(-)$1	307	45	79	16.7564
UGGGGCUGUGGGACCCAAGUGGUGAACUGUGGCC	chr4:1315215-1315511(+)$1	296	145	179	13.4750
CCCCGAAGCCUGCGUUUCCUGCUGCCUGGGUUCG	chr4:2935796-2936039(-)$1	243	173	207	11.9615
uggGGUCAGCUGGCUUAUUCAAGGGCUGUGUAAC	chr1:10165470-10165706(+)$1	236	20	54	10.1580
AGGUGGGUCCUGGCCCCCUUGGCAUUCCGCCUUC	chr19:2211644-2211902(+)$1	258	195	229	14.4268
UUGCAUUGUUCACGUGUAGUGUGUGAACAGUGCA	chrX:154279932-154280234(+)$1	302	151	185	14.4831
GGGUCAGGUCCUGGGAGAGCUGGGCCUGGCCCGG	chr20:60906419-60906675(-)$1	256	7	41	14.2462
GUUGAGGACUAUAUUCCCUGAGCUUUGUCCUUGA	chr11:62594575-62594802(-)$1	227	36	70	15.4497
CAUGUGUACCAGUGGACUUUGAAGAGGUGCACGU	chrX:153055171-153055409(-)$1	238	135	169	15.9510
GGCUGGGGCUGGGGCUGAGGCGAGGCCCCCAGCU	chr20:39985990-39986290(+)$1	300	108	142	12.3438
UGGUGUGUCAGUGGCUGGCUUGUGACCUGGCAUG	chr20:44592457-44592760(-)$1	303	87	121	10.7718
UUGUGGGGAGGGCGUAGUUCCUAAUCCCCUUUCC	chr5:70751543-70751784(+)$1	241	59	93	12.0687
CCGACGAAGUCGGAGCGGGUGGGGAGGGAGCCGG	chr15:91446280-91446542(+)$1	262	86	120	10.7545
CAGUUUGUUAUUUAAUGGCAAGAAGUAAUAAAUU	chr5:130495145-130495418(-)$1	273	46	80	16.2348
GAUAUGGAGCAGCAAGUAGAUGCGUUCUGUAUUC	chr16:30977957-30978205(+)$1	248	132	166	16.6024
CAGGUGCCUCUGCCCCAGGGCUGGGCAGAGGCAG	chr11:67048240-67048538(+)$1	298	256	290	12.9114
AAGAUACAAUUAUGUAAUUGAACAGUAAUUGUAA	chr12:72265887-72266150(+)$1	263	151	185	10.7973
AGGGGGAUGCACGCAGACAGAGGCUCUGCCUGCC	chr14:105243019-105243287(-)$1	268	141	175	12.2182
UGAGAGUGGAGGUAUGCAGAGUGCUGCCAGUCAC	chr12:116452937-116453175(-)$1	238	97	131	11.6644
UCUAGCAGUCCUGCUUUCCCCUGGUAGGGCUCAG	chr5:140038796-140039032(+)$1	236	153	187	11.3737
UUCUCAUGCCAAUUUAUUUUAGAAUGGGUGGAGA	chr1:182850518-182850796(+)$1	278	114	148	11.1436
UCCCUGGGGAUUACUGUCAGGGGCCACCCCAGGG	chr1:228295761-228296011(-)$1	250	95	129	10.9341
CUUCUUUGCUAACAACCGCUUUGAGACAGGGAAG	chr11:65652979-65653266(-)$1	287	150	184	15.7290
GGCUGGUGGGCAUUGACAACCAGGGGAACGUGAG	chr19:879440-879695(-)$1	255	18	52	10.8371
CAUUAACACAGAGCAAGGCCAGAAUGUUCUGGAA	chr4:68406644-68406868(-)$1	224	109	143	11.6821
GGAAGUGCGGAUUGACAGGCUCAUCCCCCACAUG	chr19:12825761-12826027(-)$1	266	118	152	11.9677
GCUGGGUGCCUUCCUCACCUUCCCAGGCCUGCGG	chr19:19232177-19232425(-)$1	248	2	36	11.7453
ugcugggauuacaagcgugagccacugucccagc	chr16:50340782-50341026(+)$1	244	51	85	12.2790
GCAGGGGAGCCAGGCUUCUCACCCGCCUUCUGCC	chr9:139731686-139731952(+)$1	266	71	105	12.5653
ugccuggccugugucugccuguGCAGGCCUGUGU	chr19:45867684-45867932(-)$1	248	9	43	10.4054
AUUGCUUUUAUAUAUAUGGAAUAAUAUCUAUGUA	chr2:153550948-153551193(-)$1	245	185	219	10.9706
UCAGCACUGCACGUUCAUGAACCAGCCAGGCACA	chr17:79526278-79526583(-)$1	305	229	263	10.2219
GCCGGGGAGGGACUGGAGCGGCAGGACCUCCCCG	chr2:200776357-200776675(+)$1	318	32	66	15.4061
UGGCGUCUGGGGGCGGGGUUAGGGCGAGCGGGCG	chr9:131709930-131710266(+)$1	336	27	61	13.7208
UCUUCUCUGAGACCAUAGAAGGAGUAGACAGAGA	chr12:113715890-113716136(+)$1	246	158	192	11.7595
AAGAAAAGAAGCAGCUUUACCUACUUGUUUCUUU	chr1:145441165-145441386(+)$1	221	61	95	12.1311
GUAGAAGGACCCAGUACAGUAAGCUCUAGUCUUU	chr12:62931775-62932049(+)$1	274	163	197	12.2738
AGGCAGCUUGAGCCAGACCAUGGCCGGAUCCAGC	chr17:71205711-71206017(-)$1	306	190	224	10.3746
GGGGUCAGGGGUCAUCAGCUGUGGCUCUGACCCU	chr21:48068265-48068521(+)$1	256	1	35	15.3782
GAGUUUAAAAUCAAUGAGAUUUGAUUUUGGUAAC	chr9:139328001-139328236(-)$1	235	49	83	13.1945
GGUUGUUCCCUUGCCCUUUGGUGCAUGUGGGUUU	chr16:89629143-89629372(+)$1	229	91	125	11.5871
CCGGCAGGUAAGUGGCCCCCGCGGCGGUCGGGGA	chr11:65429430-65429682(-)$1	252	26	60	13.0346
UUGGCAGGAGCAUGCACGUGUGUGUCAGUGUCAA	chr19:17313670-17313973(+)$1	303	64	98	11.2608
GAACGCUACUGGAUCCUGGGAGGUUCAGCAAGGU	chr1:27105513-27105835(+)$1	322	100	134	11.0945
AGUUUUUUUUUUCUUUUUUGGCUCAGAAAAAAAA	chr3:195789723-195789962(-)$1	239	1	35	13.5539
UAAUCAAGUGAUUCACUGGGAAAUAGAGGAUAAU	chr18:33716179-33716437(+)$1	258	124	158	12.4455

#DB
(((((((((((((((....)))))))))))))))	chr7:44838711-44839000(+)$1	1	222	256	14.9332
(.(((((((..((((((...))))))))))))).	chr5:139062279-139062625(+)$1	1	165	199	10.7256
((((((..(...(((...)))...).)))))..)	chr12:53702468-53702728(-)$1	1	113	147	10.1810
(((((.....(((((.....)))))..)))))))	chr8:144895992-144896244(-)$1	1	15	49	10.8306
(..(((((((.((((......)))).))))))).	chr19:55556526-55556827(-)$1	1	79	113	13.1491
...(((((((.((((......))))..)))))))	chr5:142678167-142678493(-)$1	1	232	266	12.5050
(((((((((.(((.........))).))))))))	chr12:57905388-57905642(+)$1	1	19	53	15.0761
)..((((((((((((.....)))))))))))).)	chr12:57928764-57929045(-)$1	1	227	261	11.7165
((..(((.((.(((((......))))))).))).	chr1:226108938-226109201(-)$1	1	61	95	9.9546
(((((((.((.(((......))).))))))))))	chr16:74678435-74678752(-)$1	1	257	291	15.3878
((...(((((((.((.....)).)))))))...)	chr16:2810001-2810247(+)$1	1	193	227	11.3432
(((((.((.(.((((......)))).))).))))	chr20:61846836-61847118(-)$1	1	21	55	10.9161
(((((((((((((((.....))))))))))))))	chr11:45957047-45957354(-)$1	1	45	79	16.7564
(((((((((((..(((....)).)..))))))))	chr4:1315215-1315511(+)$1	1	145	179	13.4750
(((((((.((.((((.....)).))..)).))))	chr4:2935796-2936039(-)$1	1	173	207	11.9615
.(((....((.(((((......)))))))....)	chr1:10165470-10165706(+)$1	1	20	54	10.1580
(((((((.....(((.....)))..)))))))))	chr19:2211644-2211902(+)$1	1	195	229	14.4268
((((((((((((((.......)))))))))))))	chrX:154279932-154280234(+)$1	1	151	185	14.4831
(((((((((((.(......).))))))))))).(	chr20:60906419-60906675(-)$1	1	7	41	14.2462
(((((((((....(((...)))....))))))))	chr11:62594575-62594802(-)$1	1	36	70	15.4497
((((((((((..(.........)..)))))))))	chrX:153055171-153055409(-)$1	1	135	169	15.9510
..((((((((((((((.......)).))))))))	chr20:39985990-39986290(+)$1	1	108	142	12.3438
((((((((((((.((......)).).))))))))	chr20:44592457-44592760(-)$1	1	87	121	10.7718
.(.(((((((((.((........)).))))))))	chr5:70751543-70751784(+)$1	1	59	93	12.0687
((((....((.(((((...(((((((((((..((	chr15:91446280-91446542(+)$1	1	86	120	10.7545
(((((((((((((.........))))))))))))	chr5:130495145-130495418(-)$1	1	46	80	16.2348
((((((((((.(((......)))))))))))))(	chr16:30977957-30978205(+)$1	1	132	166	16.6024
(((((((((((((((.......))))))))))).	chr11:67048240-67048538(+)$1	1	256	290	12.9114
.((((((((((((((......))).)))))))).	chr12:72265887-72266150(+)$1	1	151	185	10.7973
(((.(((.((.(.........)))))).))))))	chr14:105243019-105243287(-)$1	1	141	175	12.2182
(((...(((.(((((.....))))).))).))))	chr12:116452937-116453175(-)$1	1	97	131	11.6644
(((.(.(((((((((.......))))))))))))	chr5:140038796-140039032(+)$1	1	153	187	11.3737
(((((..(((.((((......)))).))).))))	chr1:182850518-182850796(+)$1	1	114	148	11.1436
(((((((((....((.....))....))))))))	chr1:228295761-228296011(-)$1	1	95	129	10.9341
((((((((((..(((.....))))).))))))))	chr11:65652979-65653266(-)$1	1	150	184	15.7290
((((.(((..(.(((.....)))..)..))).))	chr19:879440-879695(-)$1	1	18	52	10.8371
.(((....(((((((.........)))))))..)	chr4:68406644-68406868(-)$1	1	109	143	11.6821
(.(.(((.((..(((.....)))..)).))).).	chr19:12825761-12826027(-)$1	1	118	152	11.9677
(((((.(((...(((.........)))...))).	chr19:19232177-19232425(-)$1	1	2	36	11.7453
(((((((((.....((....))....))))))))	chr16:50340782-50341026(+)$1	1	51	85	12.2790
(((((((.((..((.......)).))))))))))	chr9:139731686-139731952(+)$1	1	71	105	12.5653
((((.((((((((.(.....))))))))).).))	chr19:45867684-45867932(-)$1	1	9	43	10.4054
(((((((.((.(((((((((......))))))))	chr2:153550948-153551193(-)$1	1	185	219	10.9706
(..((.((((..(((....)))..).))))))))	chr17:79526278-79526583(-)$1	1	229	263	10.2219
.(((((((((..(((......)))..))))))))	chr2:200776357-200776675(+)$1	1	32	66	15.4061
..(((((((...((.........))...))))))	chr9:131709930-131710266(+)$1	1	27	61	13.7208
.(((((((((..((......))..)...))))))	chr12:113715890-113716136(+)$1	1	158	192	11.7595
((((((((((((((..........))))))))))	chr1:145441165-145441386(+)$1	1	61	95	12.1311
((((((((((..(((.......)))...))))))	chr12:62931775-62932049(+)$1	1	163	197	12.2738
.(((.(((.((((((.....))))....)).)))	chr17:71205711-71206017(-)$1	1	190	224	10.3746
((((((((((.((((.....))))))))))))))	chr21:48068265-48068521(+)$1	1	1	35	15.3782
))((((((((((((......)))))))))..)))	chr9:139328001-139328236(-)$1	1	49	83	13.1945
((((((((((.(((((...)).)))...)))...	chr16:89629143-89629372(+)$1	1	91	125	11.5871
(((((..((..((((...)))).)).))))))))	chr11:65429430-65429682(-)$1	1	26	60	13.0346
((((((...((((((....))))))...))))))	chr19:17313670-17313973(+)$1	1	64	98	11.2608
((.((((.(((((((......)))))))...)))	chr1:27105513-27105835(+)$1	1	100	134	11.0945
((((((((((((((..........))))))))))	chr3:195789723-195789962(-)$1	1	1	35	13.5539
(.(((...((.(((.....))).))...))).))	chr18:33716179-33716437(+)$1	1	124	158	12.4455

#PSSM
= : 0.22	g : 0.13	i : 0.13	c : 0.10	e : 0.08	[ : 0.06	b : 0.05	d : 0.05	! : 0.03	" : 0.03	$ : 0.01	h : 0.01	: : 0.01	f : 0.01	
= : 0.22	i : 0.15	c : 0.12	g : 0.10	e : 0.08	[ : 0.05	d : 0.05	h : 0.05	! : 0.03	" : 0.03	$ : 0.01	: : 0.01	b : 0.01	a : 0.01	f : 0.01	
= : 0.24	i : 0.15	g : 0.13	c : 0.13	e : 0.06	! : 0.05	h : 0.05	[ : 0.03	d : 0.03	$ : 0.01	: : 0.01	" : 0.01	a : 0.01	f : 0.01	
= : 0.25	g : 0.15	i : 0.15	c : 0.10	h : 0.06	e : 0.05	d : 0.05	[ : 0.05	" : 0.03	! : 0.01	a : 0.01	b : 0.01	f : 0.01	
= : 0.29	i : 0.15	g : 0.13	c : 0.08	h : 0.08	e : 0.05	# : 0.05	[ : 0.05	" : 0.03	a : 0.01	b : 0.01	d : 0.01	
= : 0.27	i : 0.17	g : 0.13	c : 0.08	h : 0.08	[ : 0.06	# : 0.05	" : 0.03	! : 0.03	e : 0.01	$ : 0.01	d : 0.01	
= : 0.27	i : 0.17	g : 0.13	c : 0.13	h : 0.08	! : 0.05	# : 0.05	" : 0.03	$ : 0.01	b : 0.01	d : 0.01	
= : 0.25	[ : 0.13	i : 0.12	c : 0.12	g : 0.10	h : 0.08	# : 0.05	$ : 0.03	b : 0.03	" : 0.03	! : 0.01	
= : 0.25	b : 0.20	g : 0.13	i : 0.10	h : 0.08	c : 0.08	$ : 0.03	[ : 0.03	a : 0.01	! : 0.01	" : 0.01	
= : 0.24	b : 0.20	g : 0.10	i : 0.06	! : 0.05	" : 0.05	$ : 0.05	a : 0.05	h : 0.05	[ : 0.03	# : 0.03	c : 0.03	f : 0.01	
[ : 0.25	= : 0.18	! : 0.17	" : 0.05	g : 0.05	h : 0.05	i : 0.05	e : 0.03	$ : 0.03	# : 0.03	c : 0.01	a : 0.01	b : 0.01	f : 0.01	
= : 0.15	! : 0.15	d : 0.12	e : 0.08	c : 0.08	i : 0.06	" : 0.05	g : 0.05	f : 0.03	$ : 0.03	[ : 0.03	# : 0.03	a : 0.03	h : 0.03	b : 0.01	
c : 0.25	= : 0.15	d : 0.12	e : 0.08	b : 0.06	[ : 0.05	i : 0.05	f : 0.03	a : 0.03	# : 0.03	g : 0.03	! : 0.01	r : 0.01	$ : 0.01	h : 0.01	
c : 0.25	= : 0.13	b : 0.13	d : 0.12	e : 0.08	r : 0.06	i : 0.05	f : 0.03	g : 0.03	a : 0.01	o : 0.01	$ : 0.01	[ : 0.01	
c : 0.18	b : 0.15	d : 0.12	e : 0.08	r : 0.08	o : 0.08	= : 0.06	f : 0.03	p : 0.03	i : 0.03	g : 0.03	s : 0.03	a : 0.01	n : 0.01	
n : 0.25	o : 0.22	r : 0.12	p : 0.08	b : 0.06	m : 0.05	e : 0.05	l : 0.03	s : 0.03	f : 0.01	c : 0.01	q : 0.01	i : 0.01	
n : 0.25	o : 0.25	r : 0.12	p : 0.10	m : 0.08	l : 0.06	s : 0.03	f : 0.01	q : 0.01	" : 0.01	i : 0.01	
n : 0.25	o : 0.25	r : 0.12	p : 0.10	m : 0.08	l : 0.08	s : 0.03	q : 0.01	" : 0.01	i : 0.01	
n : 0.25	o : 0.25	r : 0.12	p : 0.10	m : 0.08	l : 0.05	s : 0.03	c : 0.01	q : 0.01	" : 0.01	i : 0.01	d : 0.01	
n : 0.24	o : 0.24	r : 0.12	p : 0.10	c : 0.06	= : 0.03	m : 0.03	s : 0.03	l : 0.01	a : 0.01	q : 0.01	i : 0.01	b : 0.01	d : 0.01	f : 0.01	
o : 0.18	c : 0.17	r : 0.12	b : 0.12	p : 0.10	= : 0.06	d : 0.05	f : 0.03	e : 0.03	s : 0.03	] : 0.01	q : 0.01	a : 0.01	i : 0.01	
c : 0.18	b : 0.13	d : 0.12	= : 0.10	r : 0.10	p : 0.06	o : 0.05	f : 0.03	e : 0.03	s : 0.03	3 : 0.01	q : 0.01	a : 0.01	h : 0.01	i : 0.01	] : 0.01	g : 0.01	
c : 0.18	= : 0.13	d : 0.10	] : 0.08	e : 0.06	4 : 0.05	b : 0.05	r : 0.05	f : 0.03	i : 0.03	2 : 0.03	s : 0.03	3 : 0.01	a : 0.01	p : 0.01	q : 0.01	h : 0.01	o : 0.01	g : 0.01	
= : 0.15	b : 0.13	d : 0.10	2 : 0.10	c : 0.08	e : 0.06	] : 0.05	4 : 0.05	f : 0.03	g : 0.03	i : 0.03	r : 0.03	s : 0.03	3 : 0.01	a : 0.01	h : 0.01	o : 0.01	
= : 0.20	b : 0.15	2 : 0.10	c : 0.08	a : 0.06	e : 0.06	d : 0.06	4 : 0.06	g : 0.05	f : 0.03	i : 0.03	] : 0.01	h : 0.01	o : 0.01	
= : 0.22	] : 0.20	3 : 0.10	2 : 0.08	4 : 0.06	b : 0.05	g : 0.05	i : 0.05	e : 0.03	h : 0.03	c : 0.03	f : 0.01	a : 0.01	o : 0.01	
= : 0.31	i : 0.17	3 : 0.10	g : 0.08	c : 0.08	2 : 0.06	h : 0.06	e : 0.05	a : 0.01	b : 0.01	4 : 0.01	
= : 0.31	i : 0.17	g : 0.12	3 : 0.12	b : 0.06	h : 0.06	c : 0.05	] : 0.03	e : 0.01	2 : 0.01	4 : 0.01	
= : 0.31	i : 0.18	g : 0.15	c : 0.12	b : 0.08	h : 0.08	3 : 0.03	e : 0.01	
= : 0.31	i : 0.17	g : 0.15	] : 0.10	h : 0.06	c : 0.06	3 : 0.03	b : 0.03	e : 0.01	4 : 0.01	2 : 0.01	
= : 0.29	g : 0.17	i : 0.17	c : 0.10	h : 0.08	e : 0.03	3 : 0.03	4 : 0.01	! : 0.01	a : 0.01	b : 0.01	] : 0.01	2 : 0.01	
= : 0.29	g : 0.17	i : 0.15	h : 0.08	c : 0.06	] : 0.06	2 : 0.03	3 : 0.03	4 : 0.01	! : 0.01	a : 0.01	e : 0.01	d : 0.01	
= : 0.25	g : 0.18	i : 0.18	h : 0.08	c : 0.06	2 : 0.03	: : 0.03	3 : 0.03	e : 0.03	d : 0.03	4 : 0.01	a : 0.01	
= : 0.22	i : 0.18	g : 0.15	c : 0.08	] : 0.06	h : 0.06	d : 0.05	e : 0.05	2 : 0.03	G : 0.01	> : 0.01	b : 0.01	3 : 0.01	

#score	729.0665527145522
#seq	58
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_UTR_m3_run1.txt

#BEAR
[bbpppppppbb]e	chr2:241564630-241564884(+)$1	254	206	220	12.1811
dddpppppppdddd	chr11:2152509-2152723(-)$1	214	122	136	14.1713
cccpppppppccc6	chr5:139625206-139625486(-)$1	280	109	123	13.1112
dddpppppppdddd	chr11:2152492-2152702(-)$1	210	101	115	14.1713
cccpppppppccc:	chr11:2152648-2152852(-)$1	204	2	16	12.8763
cccpppppppccci	chr17:79780663-79780966(-)$1	303	255	269	13.5075
cccpppppppccc:	chr11:2152964-2153172(-)$1	208	18	32	12.8763
dddpppppppdddd	chr16:4739396-4739646(+)$1	250	228	242	14.1713
dddpppppppdddd	chr11:770656-770906(-)$1	250	1	15	14.1713
dddpppppppdddd	chr11:2152470-2152672(-)$1	202	71	85	14.1713
cccpppppppccci	chr17:79780470-79780737(-)$1	267	26	40	13.5075
dddpppppppdddd	chr11:2152484-2152692(-)$1	208	91	105	14.1713
dddpppppppdddd	chr5:42800411-42800630(-)$1	219	196	210	14.1713
dddpppppppdddd	chr11:2152472-2152675(-)$1	203	74	88	14.1713
eeepppppppeeee	chr11:118621581-118621856(-)$1	275	31	45	12.4128
gggpppppppgggg	chr16:67904722-67904985(+)$1	263	91	105	12.6305
cccpppppppccc:	chr11:2152663-2152870(-)$1	207	20	34	12.8763
cccpppppppccc:	chr11:2152978-2153192(-)$1	214	38	52	12.8763
dddpppppppdddd	chr8:143817671-143817987(+)$1	316	42	56	14.1713
[bbpppppppbb]=	chr10:98717740-98717990(+)$1	250	14	28	12.1804
[bbpppppppbb]b	chr12:113826779-113827035(+)$1	256	98	112	11.9962
dddpppppppdddd	chr11:2152524-2152727(-)$1	203	126	140	14.1713
dddpppppppdddd	chr11:2152556-2152764(-)$1	208	163	177	14.1713
dddpppppppdddd	chr14:95058979-95059196(+)$1	217	41	55	14.1713
iiipppppppiiii	chr12:133298568-133298827(+)$1	259	234	248	12.7015
dddpppppppdddd	chr11:2152462-2152670(-)$1	208	69	83	14.1713
gggpppppppgggg	chr17:47127622-47127877(+)$1	255	127	141	12.6305
[bbpppppppbb]d	chr1:33789873-33790097(-)$1	224	205	219	12.3999
dddpppppppdddd	chr11:2152449-2152655(-)$1	206	54	68	14.1713
cccpppppppccc:	chr11:2153027-2153244(-)$1	217	90	104	12.8763
dddpppppppdddd	chr11:2152438-2152646(-)$1	208	45	59	14.1713
cccpppppppccc:	chr11:2152951-2153164(-)$1	213	122	136	12.8763
eeepppppppeeee	chr2:20401503-20401771(-)$1	268	114	128	12.4128
cccpppppppccc]	chr17:47126704-47127038(+)$1	334	88	102	13.5887
cccpppppppccc:	chr11:2153061-2153272(-)$1	211	118	132	12.8763
cccpppppppccc:	chr11:2152578-2152782(-)$1	204	2	16	12.8763
cccpppppppccc:	chr11:2152972-2153178(-)$1	206	24	38	12.8763
dddpppppppdddd	chr11:2152541-2152746(-)$1	205	145	159	14.1713
gggpppppppgggg	chr6:7289459-7289680(-)$1	221	12	26	12.6305
c[apppppppa]cc	chr17:79477371-79477576(-)$1	205	185	199	12.6845
dddpppppppdddd	chr5:42800354-42800611(-)$1	257	177	191	14.1713
cccpppppppccc3	chr2:208619517-208619784(+)$1	267	43	57	13.5095
dddpppppppdddd	chr11:2152534-2152736(-)$1	202	135	149	14.1713
dddpppppppdddd	chr11:116715121-116715401(-)$1	280	194	208	14.1713
dddpppppppdddd	chr2:170606080-170606400(+)$1	320	34	48	14.1713
eeepppppppeeee	chr3:127789973-127790278(+)$1	305	6	20	12.4128
[bbpppppppbb]d	chr12:50156793-50157018(+)$1	225	186	200	12.3999
fbbpppppppbb]f	chr15:75136616-75136895(-)$1	279	243	257	11.8510
gggpppppppgggg	chr9:131910780-131911059(+)$1	279	131	145	12.6305
dddpppppppdddd	chr11:2152456-2152662(-)$1	206	61	75	14.1713
[bbpppppppbba]	chr19:11560267-11560492(+)$1	225	150	164	12.2192
cbbpppppppbb]c	chr11:68524789-68525068(-)$1	279	18	32	12.3460
cccpppppppccc]	chr20:4837261-4837520(-)$1	259	164	178	13.5887
dddpppppppdddd	chr11:61633618-61633838(+)$1	220	155	169	14.1713
dddpppppppdddd	chr11:2152546-2152756(-)$1	210	155	169	14.1713
dddpppppppdddd	chr11:2152536-2152741(-)$1	205	140	154	14.1713
dddpppppppdddd	chr17:79477312-79477540(-)$1	228	155	169	14.1713
cccpppppppccc]	chr8:11700934-11701184(-)$1	250	165	179	13.5887
cccpppppppccc:	chr11:2152652-2152858(-)$1	206	8	22	12.8763
cccpppppppccc:	chr11:2153009-2153220(-)$1	211	66	80	12.8763
gggpppppppgggg	chr16:67904785-67905012(+)$1	227	28	42	12.6305
dddpppppppdddd	chr17:7215516-7215762(+)$1	246	195	209	14.1713
cccpppppppccc]	chr2:231912123-231912351(+)$1	228	100	114	13.5887
dddpppppppdddd	chr1:156712482-156712732(-)$1	250	199	213	14.1713
cccpppppppccc:	chr11:2153020-2153227(-)$1	207	73	87	12.8763
dddpppppppdddd	chr2:20401329-20401578(-)$1	249	142	156	14.1713
[bbpppppppbb]e	chr2:241564812-241565073(+)$1	261	24	38	12.1811
dddpppppppdddd	chr17:79477340-79477548(-)$1	208	163	177	14.1713
cccpppppppccc]	chr20:44054449-44054734(+)$1	285	74	88	13.5887
gggpppppppgggg	chr17:47127683-47127918(+)$1	235	66	80	12.6305
dddpppppppdddd	chr16:89980035-89980338(+)$1	303	2	16	14.1713
dddpppppppdddd	chr9:136898038-136898314(-)$1	276	145	159	14.1713
dddpppppppdddd	chr17:79477348-79477571(-)$1	223	186	200	14.1713
===ppppppp====	chr17:56167684-56167959(+)$1	275	62	76	12.8124
dddpppppppdddd	chr11:2152475-2152680(-)$1	205	79	93	14.1713
dddpppppppdddd	chr11:2152502-2152709(-)$1	207	108	122	14.1713

#otherMatches

#Seq PSSM
CCCACCUUAAGGAG	chr2:241564630-241564884(+)$1	254	206	220	12.1811
CUGUAUGGAUCAGG	chr11:2152509-2152723(-)$1	214	122	136	14.1713
GGCUUUGCCUGCCA	chr5:139625206-139625486(-)$1	280	109	123	13.1112
CUGUAUGGAUCAGG	chr11:2152492-2152702(-)$1	210	101	115	14.1713
ugcacacacagcac	chr11:2152648-2152852(-)$1	204	2	16	12.8763
GUGGUCAGGAUACA	chr17:79780663-79780966(-)$1	303	255	269	13.5075
ugcacacacagcac	chr11:2152964-2153172(-)$1	208	18	32	12.8763
ACCUCCUCCUGGUG	chr16:4739396-4739646(+)$1	250	228	242	14.1713
AGGAAAUGAACCUG	chr11:770656-770906(-)$1	250	1	15	14.1713
CUGUAUGGAUCAGG	chr11:2152470-2152672(-)$1	202	71	85	14.1713
GUGGUCAGGAUACA	chr17:79780470-79780737(-)$1	267	26	40	13.5075
CUGUAUGGAUCAGG	chr11:2152484-2152692(-)$1	208	91	105	14.1713
CAAUAUUACUUUGU	chr5:42800411-42800630(-)$1	219	196	210	14.1713
CUGUAUGGAUCAGG	chr11:2152472-2152675(-)$1	203	74	88	14.1713
CUUUGUAAAUAAGU	chr11:118621581-118621856(-)$1	275	31	45	12.4128
UGACCUCCUCUCAG	chr16:67904722-67904985(+)$1	263	91	105	12.6305
ugcacacacagcac	chr11:2152663-2152870(-)$1	207	20	34	12.8763
ugcacacacagcac	chr11:2152978-2153192(-)$1	214	38	52	12.8763
CCACCCUUUCUGGG	chr8:143817671-143817987(+)$1	316	42	56	14.1713
AUCUGUAAUUGAAG	chr10:98717740-98717990(+)$1	250	14	28	12.1804
GCGUUGUCUUCGGC	chr12:113826779-113827035(+)$1	256	98	112	11.9962
CUGUAUGGAUCAGG	chr11:2152524-2152727(-)$1	203	126	140	14.1713
CUGUAUGGAUCAGG	chr11:2152556-2152764(-)$1	208	163	177	14.1713
caugggaaaaaugu	chr14:95058979-95059196(+)$1	217	41	55	14.1713
UUUUAUGCUUAGGG	chr12:133298568-133298827(+)$1	259	234	248	12.7015
CUGUAUGGAUCAGG	chr11:2152462-2152670(-)$1	208	69	83	14.1713
GGACGCUAACUCCC	chr17:47127622-47127877(+)$1	255	127	141	12.6305
UGUGUGUAUGACUG	chr1:33789873-33790097(-)$1	224	205	219	12.3999
CUGUAUGGAUCAGG	chr11:2152449-2152655(-)$1	206	54	68	14.1713
ugcacacacagcac	chr11:2153027-2153244(-)$1	217	90	104	12.8763
CUGUAUGGAUCAGG	chr11:2152438-2152646(-)$1	208	45	59	14.1713
ugcacacacagcac	chr11:2152951-2153164(-)$1	213	122	136	12.8763
CAGGGCCAUGCUGA	chr2:20401503-20401771(-)$1	268	114	128	12.4128
CACGGAGGAAGUGA	chr17:47126704-47127038(+)$1	334	88	102	13.5887
ugcacacacagcac	chr11:2153061-2153272(-)$1	211	118	132	12.8763
ugcacacacagcac	chr11:2152578-2152782(-)$1	204	2	16	12.8763
ugcacacacagcac	chr11:2152972-2153178(-)$1	206	24	38	12.8763
CUGUAUGGAUCAGG	chr11:2152541-2152746(-)$1	205	145	159	14.1713
AAUAGCUCAAAUUU	chr6:7289459-7289680(-)$1	221	12	26	12.6305
UGAGUCUGUGUGGC	chr17:79477371-79477576(-)$1	205	185	199	12.6845
CAAUAUUACUUUGU	chr5:42800354-42800611(-)$1	257	177	191	14.1713
UCUUGAUAGCAGAC	chr2:208619517-208619784(+)$1	267	43	57	13.5095
CUGUAUGGAUCAGG	chr11:2152534-2152736(-)$1	202	135	149	14.1713
GGUACCCUCAGCCC	chr11:116715121-116715401(-)$1	280	194	208	14.1713
CCUACUCAAAGGGA	chr2:170606080-170606400(+)$1	320	34	48	14.1713
GGCAGUGCUAGCCa	chr3:127789973-127790278(+)$1	305	6	20	12.4128
GCCAACUUCAGGAG	chr12:50156793-50157018(+)$1	225	186	200	12.3999
ACUGACCCCAAGCU	chr15:75136616-75136895(-)$1	279	243	257	11.8510
CUGGCUCUUACAGG	chr9:131910780-131911059(+)$1	279	131	145	12.6305
CUGUAUGGAUCAGG	chr11:2152456-2152662(-)$1	206	61	75	14.1713
ugcgaccucagcug	chr19:11560267-11560492(+)$1	225	150	164	12.2192
GCAUUAAUCCUGAC	chr11:68524789-68525068(-)$1	279	18	32	12.3460
UCCUCCCUUUGGAG	chr20:4837261-4837520(-)$1	259	164	178	13.5887
GGCACAGCCAGCCC	chr11:61633618-61633838(+)$1	220	155	169	14.1713
CUGUAUGGAUCAGG	chr11:2152546-2152756(-)$1	210	155	169	14.1713
CUGUAUGGAUCAGG	chr11:2152536-2152741(-)$1	205	140	154	14.1713
UGUGUGGCCAGCAG	chr17:79477312-79477540(-)$1	228	155	169	14.1713
UAGAAACAUGUUAU	chr8:11700934-11701184(-)$1	250	165	179	13.5887
ugcacacacagcac	chr11:2152652-2152858(-)$1	206	8	22	12.8763
ugcacacacagcac	chr11:2153009-2153220(-)$1	211	66	80	12.8763
UGACCUCCUCUCAG	chr16:67904785-67905012(+)$1	227	28	42	12.6305
GGGCUCUCUCCCCG	chr17:7215516-7215762(+)$1	246	195	209	14.1713
uggcuuuaaaccag	chr2:231912123-231912351(+)$1	228	100	114	13.5887
GGUUGACUUUACCC	chr1:156712482-156712732(-)$1	250	199	213	14.1713
ugcacacacagcac	chr11:2153020-2153227(-)$1	207	73	87	12.8763
CCUCCAUCCAAGGC	chr2:20401329-20401578(-)$1	249	142	156	14.1713
CCCACCUUAAGGAG	chr2:241564812-241565073(+)$1	261	24	38	12.1811
UGUGUGGCCAGCAG	chr17:79477340-79477548(-)$1	208	163	177	14.1713
GGCUGUUUCUGCCA	chr20:44054449-44054734(+)$1	285	74	88	13.5887
GGACGCUAACUCCC	chr17:47127683-47127918(+)$1	235	66	80	12.6305
CCUUCAAUGCAGGC	chr16:89980035-89980338(+)$1	303	2	16	14.1713
CGAAGGGUCAUCGC	chr9:136898038-136898314(-)$1	276	145	159	14.1713
UGUGUGGCCAGCAG	chr17:79477348-79477571(-)$1	223	186	200	14.1713
UUUGAAAAUAAAGA	chr17:56167684-56167959(+)$1	275	62	76	12.8124
CUGUAUGGAUCAGG	chr11:2152475-2152680(-)$1	205	79	93	14.1713
CUGUAUGGAUCAGG	chr11:2152502-2152709(-)$1	207	108	122	14.1713

#DB
.((.......)).)	chr2:241564630-241564884(+)$1	1	206	220	12.1811
(((.......))))	chr11:2152509-2152723(-)$1	1	122	136	14.1713
(((.......))).	chr5:139625206-139625486(-)$1	1	109	123	13.1112
(((.......))))	chr11:2152492-2152702(-)$1	1	101	115	14.1713
(((.......))).	chr11:2152648-2152852(-)$1	1	2	16	12.8763
(((.......))))	chr17:79780663-79780966(-)$1	1	255	269	13.5075
(((.......))).	chr11:2152964-2153172(-)$1	1	18	32	12.8763
(((.......))))	chr16:4739396-4739646(+)$1	1	228	242	14.1713
(((.......))))	chr11:770656-770906(-)$1	1	1	15	14.1713
(((.......))))	chr11:2152470-2152672(-)$1	1	71	85	14.1713
(((.......))))	chr17:79780470-79780737(-)$1	1	26	40	13.5075
(((.......))))	chr11:2152484-2152692(-)$1	1	91	105	14.1713
(((.......))))	chr5:42800411-42800630(-)$1	1	196	210	14.1713
(((.......))))	chr11:2152472-2152675(-)$1	1	74	88	14.1713
(((.......))))	chr11:118621581-118621856(-)$1	1	31	45	12.4128
(((.......))))	chr16:67904722-67904985(+)$1	1	91	105	12.6305
(((.......))).	chr11:2152663-2152870(-)$1	1	20	34	12.8763
(((.......))).	chr11:2152978-2153192(-)$1	1	38	52	12.8763
(((.......))))	chr8:143817671-143817987(+)$1	1	42	56	14.1713
.((.......)).)	chr10:98717740-98717990(+)$1	1	14	28	12.1804
.((.......)).)	chr12:113826779-113827035(+)$1	1	98	112	11.9962
(((.......))))	chr11:2152524-2152727(-)$1	1	126	140	14.1713
(((.......))))	chr11:2152556-2152764(-)$1	1	163	177	14.1713
(((.......))))	chr14:95058979-95059196(+)$1	1	41	55	14.1713
(((.......))))	chr12:133298568-133298827(+)$1	1	234	248	12.7015
(((.......))))	chr11:2152462-2152670(-)$1	1	69	83	14.1713
(((.......))))	chr17:47127622-47127877(+)$1	1	127	141	12.6305
.((.......)).)	chr1:33789873-33790097(-)$1	1	205	219	12.3999
(((.......))))	chr11:2152449-2152655(-)$1	1	54	68	14.1713
(((.......))).	chr11:2153027-2153244(-)$1	1	90	104	12.8763
(((.......))))	chr11:2152438-2152646(-)$1	1	45	59	14.1713
(((.......))).	chr11:2152951-2153164(-)$1	1	122	136	12.8763
(((.......))))	chr2:20401503-20401771(-)$1	1	114	128	12.4128
(((.......))).	chr17:47126704-47127038(+)$1	1	88	102	13.5887
(((.......))).	chr11:2153061-2153272(-)$1	1	118	132	12.8763
(((.......))).	chr11:2152578-2152782(-)$1	1	2	16	12.8763
(((.......))).	chr11:2152972-2153178(-)$1	1	24	38	12.8763
(((.......))))	chr11:2152541-2152746(-)$1	1	145	159	14.1713
(((.......))))	chr6:7289459-7289680(-)$1	1	12	26	12.6305
(.(.......).))	chr17:79477371-79477576(-)$1	1	185	199	12.6845
(((.......))))	chr5:42800354-42800611(-)$1	1	177	191	14.1713
(((.......))).	chr2:208619517-208619784(+)$1	1	43	57	13.5095
(((.......))))	chr11:2152534-2152736(-)$1	1	135	149	14.1713
(((.......))))	chr11:116715121-116715401(-)$1	1	194	208	14.1713
(((.......))))	chr2:170606080-170606400(+)$1	1	34	48	14.1713
(((.......))))	chr3:127789973-127790278(+)$1	1	6	20	12.4128
.((.......)).)	chr12:50156793-50157018(+)$1	1	186	200	12.3999
(((.......)).)	chr15:75136616-75136895(-)$1	1	243	257	11.8510
(((.......))))	chr9:131910780-131911059(+)$1	1	131	145	12.6305
(((.......))))	chr11:2152456-2152662(-)$1	1	61	75	14.1713
.((.......))).	chr19:11560267-11560492(+)$1	1	150	164	12.2192
(((.......)).)	chr11:68524789-68525068(-)$1	1	18	32	12.3460
(((.......))).	chr20:4837261-4837520(-)$1	1	164	178	13.5887
(((.......))))	chr11:61633618-61633838(+)$1	1	155	169	14.1713
(((.......))))	chr11:2152546-2152756(-)$1	1	155	169	14.1713
(((.......))))	chr11:2152536-2152741(-)$1	1	140	154	14.1713
(((.......))))	chr17:79477312-79477540(-)$1	1	155	169	14.1713
(((.......))).	chr8:11700934-11701184(-)$1	1	165	179	13.5887
(((.......))).	chr11:2152652-2152858(-)$1	1	8	22	12.8763
(((.......))).	chr11:2153009-2153220(-)$1	1	66	80	12.8763
(((.......))))	chr16:67904785-67905012(+)$1	1	28	42	12.6305
(((.......))))	chr17:7215516-7215762(+)$1	1	195	209	14.1713
(((.......))).	chr2:231912123-231912351(+)$1	1	100	114	13.5887
(((.......))))	chr1:156712482-156712732(-)$1	1	199	213	14.1713
(((.......))).	chr11:2153020-2153227(-)$1	1	73	87	12.8763
(((.......))))	chr2:20401329-20401578(-)$1	1	142	156	14.1713
.((.......)).)	chr2:241564812-241565073(+)$1	1	24	38	12.1811
(((.......))))	chr17:79477340-79477548(-)$1	1	163	177	14.1713
(((.......))).	chr20:44054449-44054734(+)$1	1	74	88	13.5887
(((.......))))	chr17:47127683-47127918(+)$1	1	66	80	12.6305
(((.......))))	chr16:89980035-89980338(+)$1	1	2	16	14.1713
(((.......))))	chr9:136898038-136898314(-)$1	1	145	159	14.1713
(((.......))))	chr17:79477348-79477571(-)$1	1	186	200	14.1713
(((.......))))	chr17:56167684-56167959(+)$1	1	62	76	12.8124
(((.......))))	chr11:2152475-2152680(-)$1	1	79	93	14.1713
(((.......))))	chr11:2152502-2152709(-)$1	1	108	122	14.1713

#PSSM
d : 0.44	c : 0.30	[ : 0.09	g : 0.07	e : 0.03	i : 0.01	f : 0.01	= : 0.01	
d : 0.44	c : 0.27	b : 0.11	g : 0.07	e : 0.03	i : 0.01	[ : 0.01	= : 0.01	
d : 0.44	c : 0.27	b : 0.11	g : 0.07	e : 0.03	i : 0.01	a : 0.01	= : 0.01	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
d : 0.44	c : 0.27	b : 0.11	g : 0.07	e : 0.03	i : 0.01	a : 0.01	= : 0.01	
d : 0.44	c : 0.27	b : 0.11	g : 0.07	e : 0.03	i : 0.01	] : 0.01	= : 0.01	
d : 0.44	c : 0.28	] : 0.10	g : 0.07	e : 0.03	i : 0.01	a : 0.01	= : 0.01	
d : 0.47	: : 0.15	g : 0.07	] : 0.07	e : 0.06	i : 0.03	= : 0.02	c : 0.02	6 : 0.01	b : 0.01	3 : 0.01	f : 0.01	

#score	1018.8965300653543
#seq	76
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_transcript_m2_run2.txt

#BEAR
fffffuuuuuuuuuuuufff	chr20:62579885-62580144(-)$1	259	231	251	21.9850
eeeeeuuuuuuuuuuuueee	chr16:89918315-89918604(+)$1	289	57	77	23.2809
:ddddtttttttttttdddd	chr17:16250918-16251199(-)$1	281	110	130	20.4668
fffffuuuuuuuuuuuufff	chr19:2013971-2014247(-)$1	276	81	101	21.9850
dddyyyyyyyyyyyyyyyyd	chr12:22778691-22779000(+)$1	309	175	195	20.2296
:ddddtttttttttttdddd	chr17:882124-882386(-)$1	262	211	231	20.4668
g!!ccctttttttttttccc	chr1:17960838-17961084(+)$1	246	58	78	21.5515
#cccvvvvvvvvvvvvvccc	chr13:113715322-113715580(+)$1	258	213	233	21.9769
eeeeevvvvvvvvvvvvvee	chr6:119632677-119633002(-)$1	325	135	155	22.8873
[dddduuuuuuuuuuuuddd	chr8:123862999-123863280(+)$1	281	42	62	22.8903
ddddvvvvvvvvvvvvvddd	chr19:45323516-45323736(+)$1	220	5	25	22.2171
b[cccyyyyyyyyyyyyyyy	chr16:69649877-69650136(+)$1	259	207	227	20.1338
eeeeauuuuuuuuuuuua]e	chr21:9926811-9927096(-)$1	285	252	272	23.3249
ddddwwwwwwwwwwwwwwdd	chr2:236686661-236686943(+)$1	282	72	92	21.4998
eeeeeyyyyyyyyyyyyyyy	chr1:33812959-33813213(-)$1	254	117	137	20.7690
eeeeevvvvvvvvvvvvvee	chr16:20712889-20713153(+)$1	264	52	72	22.8873
eeeeeuuuuuuuuuuuueee	chr10:71972631-71972900(-)$1	269	18	38	23.2809
eeeeettttttttttteeee	chr2:69834193-69834542(-)$1	349	318	338	21.9323
ggggggtttttttttttggg	chr2:3418106-3418388(+)$1	282	5	25	20.9137
eeeewwwwwwwwwwwwwwee	chr16:84789581-84789854(+)$1	273	6	26	21.8999
!!cccuuuuuuuuuuuuccc	chr7:66190211-66190490(+)$1	279	23	43	22.9207
eeeeeuuuuuuuuuuuueee	chr5:32536784-32537057(+)$1	273	147	167	23.2809
ffffwwwwwwwwwwwwwwff	chr20:44981014-44981267(-)$1	253	63	83	20.8337
ddddduuuuuuuuuuuuddd	chr17:76973665-76973958(-)$1	293	140	160	22.8326
eeeeettttttttttteeee	chr20:47893796-47894073(-)$1	277	194	214	21.9323
d[cccuuuuuuuuuuuuccc	chr3:120361107-120361388(-)$1	281	164	184	22.8883
fffffuuuuuuuuuuuufff	chr22:30805156-30805419(-)$1	263	89	109	21.9850
=[cccyyyyyyyyyyyyyyy	chr5:1333621-1333882(-)$1	261	118	138	20.4371
eeeewwwwwwwwwwwwwwee	chr17:80803978-80804242(+)$1	264	57	77	21.8999
ggggguuuuuuuuuuuuggg	chr20:30281757-30282005(-)$1	248	129	149	22.5552
ggggggtttttttttttggg	chr2:61764845-61765110(-)$1	265	159	179	20.9137
dddccctttttttttttccc	chr11:61104285-61104595(+)$1	310	174	194	21.6119
bb[bbuuuuuuuuuuuubb]	chr18:77671756-77672052(-)$1	296	30	50	20.8721
ddddduuuuuuuuuuuuddd	chr2:170773230-170773518(+)$1	288	129	149	22.8326
ddddwwwwwwwwwwwwwwdd	chrX:70753761-70754031(+)$1	270	227	247	21.4998
[a[ccctttttttttttccc	chr4:725990-726312(+)$1	322	205	225	21.4601
d[cccuuuuuuuuuuuuccc	chr17:41299720-41300026(+)$1	306	225	245	22.8883
eeeeeuuuuuuuuuuuueee	chr6:36654240-36654562(+)$1	322	55	75	23.2809
[dddduuuuuuuuuuuuddd	chr1:1686908-1687198(-)$1	290	125	145	22.8903
eeeeettttttttttteeee	chr14:24570605-24570857(+)$1	252	170	190	21.9323
!ddddtttttttttttdddd	chr22:19339222-19339533(-)$1	311	250	270	21.4988
cc[ccctttttttttttccc	chr19:6361937-6362235(+)$1	298	73	93	21.4271
eeeeettttttttttteeee	chr19:42410329-42410626(+)$1	297	205	225	21.9323
[bb[avvvvvvvvvvvvva]	chr6:2191124-2191388(-)$1	264	160	180	21.5173
eeeeeyyyyyyyyyyyyyyy	chr6:41553766-41554034(+)$1	268	207	227	20.7690
ggggguuuuuuuuuuuuggg	chr19:6732692-6732968(-)$1	276	146	166	22.5552
ggggguuuuuuuuuuuuggg	chr2:204305582-204305856(-)$1	274	163	183	22.5552
eeeewwwwwwwwwwwwwwee	chr3:65952142-65952418(-)$1	276	87	107	21.8999
ddddvvvvvvvvvvvvvddd	chr20:48329318-48329584(-)$1	266	73	93	22.2171
ff[bbwwwwwwwwwwwwwwb	chr1:32828472-32828731(-)$1	259	224	244	20.0534
c[cccvvvvvvvvvvvvvcc	chr6:1634911-1635188(-)$1	277	211	231	22.3856
ddddvvvvvvvvvvvvvddd	chr22:21348662-21348940(+)$1	278	16	36	22.2171
%dddduuuuuuuuuuuuddd	chr3:12969436-12969801(-)$1	365	14	34	22.1313
eeeeevvvvvvvvvvvvvee	chr9:116860914-116861263(-)$1	349	71	91	22.8873
e[cccuuuuuuuuuuuuccc	chr3:9975612-9975870(+)$1	258	22	42	23.0162
c[cccwwwwwwwwwwwwwwc	chr12:26522053-26522298(-)$1	245	205	225	21.1420
!ddddtttttttttttdddd	chr22:22333480-22333744(-)$1	264	148	168	21.4988
ffffwwwwwwwwwwwwwwff	chr17:74470187-74470532(-)$1	345	85	105	20.8337
eeeewwwwwwwwwwwwwwee	chr19:19459203-19459503(+)$1	300	98	118	21.8999
fffffuuuuuuuuuuuufff	chr17:75305454-75305778(+)$1	324	227	247	21.9850
eeeeettttttttttteeee	chr4:1169699-1169959(-)$1	260	1	21	21.9323
eeeeettttttttttteeee	chr1:59121774-59122038(-)$1	264	7	27	21.9323
eeeeeuuuuuuuuuuuueee	chr2:102771907-102772192(+)$1	285	211	231	23.2809
ddddvvvvvvvvvvvvvddd	chr1:44053603-44053896(+)$1	293	88	108	22.2171
ffffwwwwwwwwwwwwwwff	chr5:140953088-140953484(-)$1	396	80	100	20.8337
:dddduuuuuuuuuuuuddd	chr19:7970717-7970980(+)$1	263	26	46	21.8600
dddyyyyyyyyyyyyyyyyd	chr6:3442361-3442657(-)$1	296	169	189	20.2296
hhhhhvvvvvvvvvvvvvhh	chr19:6745922-6746192(+)$1	270	124	144	20.9285
=====vvvvvvvvvvvvv==	chr2:3440378-3440693(+)$1	315	107	127	22.2394
gg!!awwwwwwwwwwwwwwa	chr19:1062308-1062606(+)$1	298	7	27	21.0296
ggggggtttttttttttggg	chr7:101482394-101482720(+)$1	326	40	60	20.9137
eeeeeuuuuuuuuuuuueee	chr3:10880854-10881214(+)$1	360	191	211	23.2809

#otherMatches

#Seq PSSM
gccucccuccUCACACCGAG	chr20:62579885-62580144(-)$1	259	231	251	21.9850
GCUGCUCGGCCUCAUCUGCA	chr16:89918315-89918604(+)$1	289	57	77	23.2809
UACUGUCCCCAUGCCCCAGU	chr17:16250918-16251199(-)$1	281	110	130	20.4668
GGACCCCUCCUUCCCCAGGU	chr19:2013971-2014247(-)$1	276	81	101	21.9850
GGGUCCUCGUCUACCUCCUC	chr12:22778691-22779000(+)$1	309	175	195	20.2296
CCGCGACCCCUUCACCCGCG	chr17:882124-882386(-)$1	262	211	231	20.4668
UGAUGCCCUCAUUCCCCGCA	chr1:17960838-17961084(+)$1	246	58	78	21.5515
CGCCACCACACUAUCCCGGC	chr13:113715322-113715580(+)$1	258	213	233	21.9769
gggaguuccuuuguccuccu	chr6:119632677-119633002(-)$1	325	135	155	22.8873
ucagauuuuguuucuccucu	chr8:123862999-123863280(+)$1	281	42	62	22.8903
CUAGCCAUUUcccaacccua	chr19:45323516-45323736(+)$1	220	5	25	22.2171
AUGCCCUCCUUAUUCAGCUC	chr16:69649877-69650136(+)$1	259	207	227	20.1338
GAUCCAACCCCCAAUCCGCG	chr21:9926811-9927096(-)$1	285	252	272	23.3249
guccuugacaucacaccugg	chr2:236686661-236686943(+)$1	282	72	92	21.4998
CCUGGCCCUUUCCACUCUCU	chr1:33812959-33813213(-)$1	254	117	137	20.7690
accuaucaauccgucaucua	chr16:20712889-20713153(+)$1	264	52	72	22.8873
agugguuuuuaguauauuca	chr10:71972631-71972900(-)$1	269	18	38	23.2809
gcguuuaucacaaucuaacg	chr2:69834193-69834542(-)$1	349	318	338	21.9323
ucgugugauccagauaaGCA	chr2:3418106-3418388(+)$1	282	5	25	20.9137
GAACCUUCUAGUAUAUCUGU	chr16:84789581-84789854(+)$1	273	6	26	21.8999
aaugaccuuuaguauauuca	chr7:66190211-66190490(+)$1	279	23	43	22.9207
cauggaaaaauugucuccca	chr5:32536784-32537057(+)$1	273	147	167	23.2809
AUCCCCAUCAUCCCGCUAGG	chr20:44981014-44981267(-)$1	253	63	83	20.8337
CGAGUCCCCUCCCAUCCACU	chr17:76973665-76973958(-)$1	293	140	160	22.8326
CGCCACCUCACAGCCUUGGC	chr20:47893796-47894073(-)$1	277	194	214	21.9323
ucagauaccucaacauuucu	chr3:120361107-120361388(-)$1	281	164	184	22.8883
AGGGGUCUAcuccuccuccc	chr22:30805156-30805419(-)$1	263	89	109	21.9850
AGUAGUCCCCCUUAUCCUCA	chr5:1333621-1333882(-)$1	261	118	138	20.4371
AGGGGGUGAGGGUGUAAGCC	chr17:80803978-80804242(+)$1	264	57	77	21.8999
GCCUGCCCUCCCACCCACAG	chr20:30281757-30282005(-)$1	248	129	149	22.5552
CCCAGAUUAAUUCCCCUUUU	chr2:61764845-61765110(-)$1	265	159	179	20.9137
GUCCUGCUUAUCCUUCCCAG	chr11:61104285-61104595(+)$1	310	174	194	21.6119
gcugcuguccucucccugcu	chr18:77671756-77672052(-)$1	296	30	50	20.8721
UAGGCCACACCCCCUAUGCC	chr2:170773230-170773518(+)$1	288	129	149	22.8326
GGCGUUGACCACCCUGCCCG	chrX:70753761-70754031(+)$1	270	227	247	21.4998
UGUCCUCAGUAUGCAUCAGG	chr4:725990-726312(+)$1	322	205	225	21.4601
UAUCCCUCCCCACCUCUGGA	chr17:41299720-41300026(+)$1	306	225	245	22.8883
GAGCCUUUUCCCUCUUUGGC	chr6:36654240-36654562(+)$1	322	55	75	23.2809
CGACGUCCCCCUCCGCUUGU	chr1:1686908-1687198(-)$1	290	125	145	22.8903
GCCCUAUCACUUCAUCAGGG	chr14:24570605-24570857(+)$1	252	170	190	21.9323
CUUCCCAUCACCUUAAGGAG	chr22:19339222-19339533(-)$1	311	250	270	21.4988
ugcgccccuccuucccuggc	chr19:6361937-6362235(+)$1	298	73	93	21.4271
UUUGGAAUCCCCCAUCCCAG	chr19:42410329-42410626(+)$1	297	205	225	21.9323
gcaguugugggugagagugg	chr6:2191124-2191388(-)$1	264	160	180	21.5173
GUUUAUCCUGUGUCUCUCUA	chr6:41553766-41554034(+)$1	268	207	227	20.7690
GGCAGCUCUGUCCACCACUG	chr19:6732692-6732968(-)$1	276	146	166	22.5552
CAGUGCCCCGCCUCCUCCAC	chr2:204305582-204305856(-)$1	274	163	183	22.5552
GCCAUAAUCUCUAGGCUUUG	chr3:65952142-65952418(-)$1	276	87	107	21.8999
UCACGUUCACCUCUUCAGUG	chr20:48329318-48329584(-)$1	266	73	93	22.2171
GAAGCACCCACCCACCUCAG	chr1:32828472-32828731(-)$1	259	224	244	20.0534
ccccucuuucuaacccacag	chr6:1634911-1635188(-)$1	277	211	231	22.3856
gucacccuccuuacccauga	chr22:21348662-21348940(+)$1	278	16	36	22.2171
UGGACUCACUGCUCCUUGUC	chr3:12969436-12969801(-)$1	365	14	34	22.1313
UCCCCAAUAAAAAAUCCCGG	chr9:116860914-116861263(-)$1	349	71	91	22.8873
CGUGCCUUUGCCCUUCUGCG	chr3:9975612-9975870(+)$1	258	22	42	23.0162
gcccuuuccucccauucaua	chr12:26522053-26522298(-)$1	245	205	225	21.1420
CCUCUUCACCCAACUCAGAG	chr22:22333480-22333744(-)$1	264	148	168	21.4988
CAGGCCCUCCCUCCUACCCC	chr17:74470187-74470532(-)$1	345	85	105	20.8337
CCCCCAUCAGAGCCUCCCGG	chr19:19459203-19459503(+)$1	300	98	118	21.8999
CUGGGACUCUUGCCCUCCCC	chr17:75305454-75305778(+)$1	324	227	247	21.9850
GGAGUCACACAAGAUCACUC	chr4:1169699-1169959(-)$1	260	1	21	21.9323
CUUUCUAUUAUUUGUUGAAA	chr1:59121774-59122038(-)$1	264	7	27	21.9323
CAGGGCCACUCCCACCCCCC	chr2:102771907-102772192(+)$1	285	211	231	23.2809
CAUGUUACUGCCAUCGUCAU	chr1:44053603-44053896(+)$1	293	88	108	22.2171
AGGUACUGCCAUCCCCCCAC	chr5:140953088-140953484(-)$1	396	80	100	20.8337
CCAGCCUUUUUAUCAUCGCU	chr19:7970717-7970980(+)$1	263	26	46	21.8600
gcaaccccacgcuaccuucu	chr6:3442361-3442657(-)$1	296	169	189	20.2296
CCCCACCCCUCUCCCCCCUG	chr19:6745922-6746192(+)$1	270	124	144	20.9285
AAUCCCCCCACCACCCCUGG	chr2:3440378-3440693(+)$1	315	107	127	22.2394
AGCCCACUUUGUCCCCACCG	chr19:1062308-1062606(+)$1	298	7	27	21.0296
cuccaaguaccaucauauug	chr7:101482394-101482720(+)$1	326	40	60	20.9137
AGUGGCUCCUGACCUCCCCA	chr3:10880854-10881214(+)$1	360	191	211	23.2809

#DB
(((((............)))	chr20:62579885-62580144(-)$1	1	231	251	21.9850
(((((............)))	chr16:89918315-89918604(+)$1	1	57	77	23.2809
.((((...........))))	chr17:16250918-16251199(-)$1	1	110	130	20.4668
(((((............)))	chr19:2013971-2014247(-)$1	1	81	101	21.9850
(((................)	chr12:22778691-22779000(+)$1	1	175	195	20.2296
.((((...........))))	chr17:882124-882386(-)$1	1	211	231	20.4668
(..(((...........)))	chr1:17960838-17961084(+)$1	1	58	78	21.5515
.(((.............)))	chr13:113715322-113715580(+)$1	1	213	233	21.9769
(((((.............))	chr6:119632677-119633002(-)$1	1	135	155	22.8873
.((((............)))	chr8:123862999-123863280(+)$1	1	42	62	22.8903
((((.............)))	chr19:45323516-45323736(+)$1	1	5	25	22.2171
(.(((...............	chr16:69649877-69650136(+)$1	1	207	227	20.1338
(((((............).)	chr21:9926811-9927096(-)$1	1	252	272	23.3249
((((..............))	chr2:236686661-236686943(+)$1	1	72	92	21.4998
(((((...............	chr1:33812959-33813213(-)$1	1	117	137	20.7690
(((((.............))	chr16:20712889-20713153(+)$1	1	52	72	22.8873
(((((............)))	chr10:71972631-71972900(-)$1	1	18	38	23.2809
(((((...........))))	chr2:69834193-69834542(-)$1	1	318	338	21.9323
((((((...........)))	chr2:3418106-3418388(+)$1	1	5	25	20.9137
((((..............))	chr16:84789581-84789854(+)$1	1	6	26	21.8999
..(((............)))	chr7:66190211-66190490(+)$1	1	23	43	22.9207
(((((............)))	chr5:32536784-32537057(+)$1	1	147	167	23.2809
((((..............))	chr20:44981014-44981267(-)$1	1	63	83	20.8337
)((((............)))	chr17:76973665-76973958(-)$1	1	140	160	22.8326
(((((...........))))	chr20:47893796-47894073(-)$1	1	194	214	21.9323
(.(((............)))	chr3:120361107-120361388(-)$1	1	164	184	22.8883
(((((............)))	chr22:30805156-30805419(-)$1	1	89	109	21.9850
(.(((...............	chr5:1333621-1333882(-)$1	1	118	138	20.4371
((((..............))	chr17:80803978-80804242(+)$1	1	57	77	21.8999
(((((............)))	chr20:30281757-30282005(-)$1	1	129	149	22.5552
((((((...........)))	chr2:61764845-61765110(-)$1	1	159	179	20.9137
((((((...........)))	chr11:61104285-61104595(+)$1	1	174	194	21.6119
((.((............)).	chr18:77671756-77672052(-)$1	1	30	50	20.8721
(((((............)))	chr2:170773230-170773518(+)$1	1	129	149	22.8326
((((..............))	chrX:70753761-70754031(+)$1	1	227	247	21.4998
.(.(((...........)))	chr4:725990-726312(+)$1	1	205	225	21.4601
(.(((............)))	chr17:41299720-41300026(+)$1	1	225	245	22.8883
(((((............)))	chr6:36654240-36654562(+)$1	1	55	75	23.2809
.((((............)))	chr1:1686908-1687198(-)$1	1	125	145	22.8903
(((((...........))))	chr14:24570605-24570857(+)$1	1	170	190	21.9323
.((((...........))))	chr22:19339222-19339533(-)$1	1	250	270	21.4988
((.(((...........)))	chr19:6361937-6362235(+)$1	1	73	93	21.4271
(((((...........))))	chr19:42410329-42410626(+)$1	1	205	225	21.9323
.((.(.............).	chr6:2191124-2191388(-)$1	1	160	180	21.5173
(((((...............	chr6:41553766-41554034(+)$1	1	207	227	20.7690
(((((............)))	chr19:6732692-6732968(-)$1	1	146	166	22.5552
(((((............)))	chr2:204305582-204305856(-)$1	1	163	183	22.5552
((((..............))	chr3:65952142-65952418(-)$1	1	87	107	21.8999
((((.............)))	chr20:48329318-48329584(-)$1	1	73	93	22.2171
((.((..............)	chr1:32828472-32828731(-)$1	1	224	244	20.0534
(.(((.............))	chr6:1634911-1635188(-)$1	1	211	231	22.3856
((((.............)))	chr22:21348662-21348940(+)$1	1	16	36	22.2171
.((((............)))	chr3:12969436-12969801(-)$1	1	14	34	22.1313
(((((.............))	chr9:116860914-116861263(-)$1	1	71	91	22.8873
(.(((............)))	chr3:9975612-9975870(+)$1	1	22	42	23.0162
(.(((..............)	chr12:26522053-26522298(-)$1	1	205	225	21.1420
.((((...........))))	chr22:22333480-22333744(-)$1	1	148	168	21.4988
((((..............))	chr17:74470187-74470532(-)$1	1	85	105	20.8337
((((..............))	chr19:19459203-19459503(+)$1	1	98	118	21.8999
(((((............)))	chr17:75305454-75305778(+)$1	1	227	247	21.9850
(((((...........))))	chr4:1169699-1169959(-)$1	1	1	21	21.9323
(((((...........))))	chr1:59121774-59122038(-)$1	1	7	27	21.9323
(((((............)))	chr2:102771907-102772192(+)$1	1	211	231	23.2809
((((.............)))	chr1:44053603-44053896(+)$1	1	88	108	22.2171
((((..............))	chr5:140953088-140953484(-)$1	1	80	100	20.8337
.((((............)))	chr19:7970717-7970980(+)$1	1	26	46	21.8600
(((................)	chr6:3442361-3442657(-)$1	1	169	189	20.2296
(((((.............))	chr19:6745922-6746192(+)$1	1	124	144	20.9285
(((((.............))	chr2:3440378-3440693(+)$1	1	107	127	22.2394
((..(..............)	chr19:1062308-1062606(+)$1	1	7	27	21.0296
((((((...........)))	chr7:101482394-101482720(+)$1	1	40	60	20.9137
(((((............)))	chr3:10880854-10881214(+)$1	1	191	211	23.2809

#PSSM
e : 0.31	d : 0.18	f : 0.11	g : 0.11	[ : 0.05	: : 0.04	! : 0.04	c : 0.04	b : 0.02	= : 0.02	# : 0.01	% : 0.01	h : 0.01	
e : 0.30	d : 0.26	f : 0.11	[ : 0.09	g : 0.09	! : 0.02	c : 0.02	b : 0.02	a : 0.01	h : 0.01	= : 0.01	
e : 0.30	d : 0.26	c : 0.12	f : 0.09	g : 0.08	[ : 0.05	! : 0.02	b : 0.01	h : 0.01	= : 0.01	
e : 0.30	d : 0.22	c : 0.18	f : 0.09	g : 0.08	y : 0.02	b : 0.02	[ : 0.01	h : 0.01	= : 0.01	! : 0.01	
e : 0.23	c : 0.16	d : 0.13	w : 0.12	g : 0.08	v : 0.06	f : 0.05	a : 0.04	y : 0.02	b : 0.02	h : 0.01	= : 0.01	
u : 0.34	v : 0.16	w : 0.16	t : 0.13	y : 0.08	c : 0.05	g : 0.04	
u : 0.34	t : 0.23	v : 0.16	w : 0.16	y : 0.08	
u : 0.34	t : 0.23	v : 0.16	w : 0.16	y : 0.08	
u : 0.34	t : 0.23	v : 0.16	w : 0.16	y : 0.08	
u : 0.34	t : 0.23	v : 0.16	w : 0.16	y : 0.08	
u : 0.34	t : 0.23	v : 0.16	w : 0.16	y : 0.08	
u : 0.34	t : 0.23	v : 0.16	w : 0.16	y : 0.08	
u : 0.34	t : 0.23	v : 0.16	w : 0.16	y : 0.08	
u : 0.34	t : 0.23	v : 0.16	w : 0.16	y : 0.08	
u : 0.34	t : 0.23	v : 0.16	w : 0.16	y : 0.08	
u : 0.34	t : 0.23	v : 0.16	w : 0.16	y : 0.08	
u : 0.34	v : 0.16	w : 0.16	t : 0.09	y : 0.08	e : 0.08	d : 0.05	
d : 0.19	e : 0.16	w : 0.16	c : 0.12	v : 0.09	y : 0.08	g : 0.08	f : 0.05	a : 0.01	b : 0.01	
e : 0.26	d : 0.22	c : 0.13	f : 0.09	y : 0.08	g : 0.08	w : 0.04	] : 0.01	b : 0.01	a : 0.01	h : 0.01	= : 0.01	
e : 0.27	d : 0.25	c : 0.15	f : 0.09	g : 0.08	y : 0.05	] : 0.02	b : 0.01	h : 0.01	= : 0.01	a : 0.01	

#score	1575.4304332538507
#seq	72
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_UTR_m2_run2.txt

#BEAR
[bb!!ffffff[ccc"""ammmma333ccc]ffffff2	chr11:101981383-101981718(+)$1	335	15	53	13.2037
e]bbccc[cccdddd[cccmmmmccc]dddd4444ccc	chr8:38325532-38325796(-)$1	264	142	180	12.5797
ddd[ccc!!dddd[cccnnnnnccc]dddd]ccc]ddd	chr16:577853-578132(+)$1	279	149	187	10.0802
eeeee!!ffffff####ccclllccc22ffffff333e	chr5:110074651-110074956(+)$1	305	224	262	12.7446
dd####eeeee[bb!!cccmmmmccc22bb22eeeeed	chr12:102091532-102091789(+)$1	257	104	142	12.7461
===[dddd[bb[eeeee[ammmma]eeeee]bbdddd]	chr1:234745066-234745360(-)$1	294	34	72	9.9078
!!bb[a[ccc[bb[ddddmmmmdddd]bb]ccca]bbf	chr7:27702379-27702642(-)$1	263	77	115	10.8631
[dddd####dddd[ddddmmmmdddd333dddd22ddd	chr2:9347075-9347336(+)$1	261	125	163	10.1520
dbb[bb[ffffff[cccooooooccc]ffffffbb]bb	chr1:155036145-155036513(+)$1	368	280	318	10.8167
##ccc[ccc[ccc"""cccmmmmccc333ccc]ccccc	chr21:45719860-45720111(+)$1	251	74	112	15.7369
:bb!!ccc!!ccc[cccmmmmccc]ccc333ccc22bb	chr19:49954771-49955051(-)$1	280	1	39	9.4375
ggggggg"""ffffff[bblllbb]ffffff4444ggg	chr2:47142757-47143032(-)$1	275	214	252	9.3542
cc[bb[ccc!!cccrrrrrrrrrccc22ccc]bb]ccc	chr19:8369822-8370090(-)$1	268	121	159	9.3973
ddd[bb[ffffff[ccc[ammmma]cccffffffbbdd	chr14:102430806-102431055(+)$1	249	114	152	11.8086
!!a[ffffff####eeeeemmmmeeeee]ffffff]a]	chr7:2472131-2472381(+)$1	250	149	187	11.5896
cc[eeeee"""bb"""cccmmmmccc22bb333eeeee	chr14:24605289-24605611(+)$1	322	162	200	13.0769
##ccchhhhhhhh"""ccclllccc333hhhhhhhh]c	chr3:48481576-48481823(+)$1	247	83	121	11.3763
g[ccc!!ffffffddddnnnnndddd333ffffff444	chr10:127511612-127511881(-)$1	269	87	125	10.0495
a!!gggggggccc[bbcccmmmmccc]bb]ccc333gg	chr12:120933825-120934087(+)$1	262	49	87	14.0795
!ccc[bbeeeee[bb!!ccclllccc22bb]eeeee]b	chr9:100818943-100819182(+)$1	239	95	133	11.5155
d"""ffffffccc!!ddddmmmmdddd4444ccc]fff	chr10:105727255-105727534(+)$1	279	186	224	13.3157
ffffffggggggg[a[cccnnnnnccc]a]ggggggg3	chr1:231557496-231557824(-)$1	328	173	211	11.4420
!!ccc"""ggggggg!!bbmmmmbbggggggg333ccc	chr16:70719787-70720053(-)$1	266	63	101	12.8017
f[bbffffff!!bb!!cccmmmmccc22bb]ffffff]	chr19:14544107-14544368(+)$1	261	64	102	13.2938
dddddddda[ccc[eeeeemmmmeeeee]ccc]a]ddd	chr2:86422416-86422662(-)$1	246	32	70	10.5114
ccc[ffffffeeeee[cccmmmmccceeeee]ffffff	chr2:178257415-178257730(+)$1	315	201	239	12.6098
[dddd[a[bb[bb!!ddddmmmmdddd22bb]bb]a]d	chr6:157802195-157802457(+)$1	262	15	53	10.9481
:iiiiiiiii[cccbb[ammmma]bb]ccciiiiiiii	chr22:24999062-24999312(+)$1	250	91	129	10.1784
###eeeee[ccc####cccmmmmcccccc]eeeee]dd	chr12:48397992-48398254(-)$1	262	28	66	13.6214
&&&iiiiiiiii"""cccnnnnnccc22iiiiiiiiif	chr19:41082687-41082976(+)$1	289	174	212	11.2397
C:ccc[ccc[ccc"""ddddlllddddccc]ccc]ccc	chr5:73936090-73936391(-)$1	301	5	43	11.2564
[bb[cccdddd[a!!cccnnnnnccc]a]dddd4444c	chr1:110527528-110527778(+)$1	250	25	63	11.9505
####dddddddd[bb[ccclllccc22bb]dddd]ddd	chr5:65017641-65018010(-)$1	369	230	268	10.9896
eeeee!!eeeeeccc[cccmmmmccc]ccc]eeeee44	chr10:92980427-92980695(+)$1	268	149	187	13.2250
ggccc[ffffff[ccccccmmmmccc]ccc333fffff	chr6:31830402-31830694(-)$1	292	211	249	14.1361
&&&&dddd!!dddd!!cccmmmmccc]dddd333dddd	chr2:85554938-85555209(-)$1	271	140	178	10.7729
idddd[ffffff[bb[cccnnnnnccc]bb]ffffff2	chr20:10654312-10654572(-)$1	260	205	243	10.7246
==========cccbb!!bbmmmmbb22bb]ccc22===	chr2:9346821-9347174(+)$1	353	223	261	11.9421
ffffffffffff[bb[bboooooobb]bb333ffffff	chr9:38068987-38069238(-)$1	251	27	65	9.6016
[bb!!dddd[dddd!!cccmmmmcccdddddddd]bb]	chr6:18155595-18155901(+)$1	306	134	172	12.2408
d####ccc[dddd[a[ddddllldddd]a]dddd]ccc	chr6:31590457-31590702(+)$1	245	4	42	11.9819
hhhhhhhh[bb"""cccccclllccc]ccc]bb]hhhh	chr1:44820601-44820994(-)$1	393	239	277	10.4983
dd"""bb[dddd"""ddddmmmmdddddddd]bb4444	chr12:110318087-110318370(-)$1	283	240	278	11.5888
c[bb!!hhhhhhhh!!cccmmmmccc]hhhhhhhhbbc	chr1:3541483-3541751(+)$1	268	177	215	11.1392
ccccc[bb[ccc[bbddddmmmmdddd]bb]ccc]bb]	chr1:150947101-150947339(-)$1	238	56	94	12.0897
ddd[a[ffffff"""ccc[bblllbb]ccc]ffffff]	chr20:60877935-60878205(+)$1	270	68	106	10.7897
[ccc!!bb[eeeeecccbbmmmmbb]ccc]eeeeebb2	chr9:86322609-86322911(-)$1	302	73	111	10.7672
g[a[ccc!!bb####ddddmmmmdddd4444bb]ccca	chr5:158636144-158636415(-)$1	271	161	199	12.6807
ddddccc!!eeeeeddddllldddd]eeeee333ccc]	chr20:35807528-35807774(+)$1	246	198	236	9.2304
f[ccc!!ffffff"""ddddllldddd]ffffffccc]	chr17:79603869-79604204(-)$1	335	171	209	12.3873
ee"""ccc!!ffffff[bbmmmmbb]ffffff]ccc]e	chr6:1312717-1312958(+)$1	241	66	104	10.8714
ccaeeeee[eeeee!!cccmmmmccc]eeeee]eeeee	chr6:117803827-117804079(+)$1	252	194	232	12.6821
ddd[ccc[dddd!!eeeeellleeeee22ddddccc]d	chr1:11740991-11741294(-)$1	303	247	285	9.7544
ddd[bb[eeeeeccc[ccclllcccccc]eeeee]bb]	chr12:106641600-106641872(-)$1	272	41	79	11.9059
!bb[cccffffff[a[cccmmmmccc]affffff]ccc	chr3:52739575-52739812(-)$1	237	179	217	15.0845
gggggggeeeeea[addddoooooodddd]a]a]eeee	chr6:42984821-42985083(+)$1	262	95	133	10.2032
[bb[ccc[==========ammmma]==========22c	chr8:96037134-96037426(+)$1	292	199	237	13.2065
ggg[bb[ggggggg[acccmmmmccc]a]ggggggg]b	chr6:160210537-160210798(-)$1	261	209	247	13.6488

#otherMatches

#Seq PSSM
cggaggcgccggggcgggggAUgcggggccgcggcgca	chr11:101981383-101981718(+)$1	335	15	53	13.2037
CGCCGGGAGUCGAGCGCCGGCCGCGGAGCUCUUGCGAC	chr8:38325532-38325796(-)$1	264	142	180	12.5797
acgaggcggcgccgccgggcuguggaggugagucccgu	chr16:577853-578132(+)$1	279	149	187	10.0802
GGGACGAGCAGGGCUUUGGCGGCGCCUUCCCUGCAAGG	chr5:110074651-110074956(+)$1	305	224	262	12.7446
GCCAUGGCGGCAGGCGCCGGGGCCGGGUCCGCGCCGCG	chr12:102091532-102091789(+)$1	257	104	142	12.7461
GGGCGCGCGUGGUGCCGGUGGGGGGCGGCGGCGGCGcc	chr1:234745066-234745360(-)$1	294	34	72	9.9078
CUUCCCUCGCGCGUGGGCACCCGCCCCCGAGCGGUGAG	chr7:27702379-27702642(-)$1	263	77	115	10.8631
GCGGCUGUGCGCCAGCGCCCUCGCGCCGAGGCGAUGCC	chr2:9347075-9347336(+)$1	261	125	163	10.1520
ACCGGGCGAGCGCACAGCCAAGUCUGCGCGCUCCCGGG	chr1:155036145-155036513(+)$1	368	280	318	10.8167
CGACGCGGCGCAGGCGGCGGGAGUGCGAGCUGGGCCCG	chr21:45719860-45720111(+)$1	251	74	112	15.7369
ACGGAGGGUAGUGCGUCUAGAGACACAUAUUCCCCACG	chr19:49954771-49955051(-)$1	280	1	39	9.4375
GCCUCUCCUGUGGGCUGGAGGCUUGGGCUCAAGAUGAG	chr2:47142757-47143032(-)$1	275	214	252	9.3542
UGGCGCUGCGACAGGGACUUGGACUGCAGCGAUGGCAG	chr19:8369822-8370090(-)$1	268	121	159	9.3973
GGCUAGCGGACGGUCCGGCUUCCGGCGGCCGUUUCUGU	chr14:102430806-102431055(+)$1	249	114	152	11.8086
AAGGCCCGGCUGUUCCGGCUGUGGCUGGUGCUGGGGUC	chr7:2472131-2472381(+)$1	250	149	187	11.5896
CUAGGCCCCCCGUCCCGGUCAUGGCCAUGCUCAGGGUC	chr14:24605289-24605611(+)$1	322	162	200	13.0769
ACGCUCCGUUUCCGGUGGCAGGGUCUGGGGAAGCGGCG	chr3:48481576-48481823(+)$1	247	83	121	11.3763
CACGCGACCCCAGUCUGAGGUGCGGGGUCCUggggccc	chr10:127511612-127511881(-)$1	269	87	125	10.0495
GGCCUGAGCACUAGGCGGCGGCGGCUGGCGUGGGGCUG	chr12:120933825-120934087(+)$1	262	49	87	14.0795
gcggcggccggACCCAGACUGGUAGUGAGGCUUUGGAC	chr9:100818943-100819182(+)$1	239	95	133	11.5155
GAAACUUUGCCUUUUAUUGUUUUUAGUCCUUAAGUGCA	chr10:105727255-105727534(+)$1	279	186	224	13.3157
ccgccgccgccgccgccAUGGCCAAUGACAGCGGCGGG	chr1:231557496-231557824(-)$1	328	173	211	11.4420
CCGAUCCUCGGCGGCUCGGAUUACCGCCGCCGUCAGUC	chr16:70719787-70720053(-)$1	266	63	101	12.8017
cggccuggccaggcgaggcgggagccgagcaggccgga	chr19:14544107-14544368(+)$1	261	64	102	13.2938
GCGUCCGCUGUGCUUCCGGUGCGCCGGGCGCGGACGCG	chr2:86422416-86422662(-)$1	246	32	70	10.5114
GCCGGGCGGAGGCUGCGGGUUCUCUCUGGCCAUCUGCU	chr2:178257415-178257730(+)$1	315	201	239	12.6098
CGCGCCGGGCUGAGCCUUGCAAACAAGUGUCUGUGCUG	chr6:157802195-157802457(+)$1	262	15	53	10.9481
AGCUUGGUUUUGGUGUGCUGCUGGAUGACCAGACCGGG	chr22:24999062-24999312(+)$1	250	91	129	10.1784
UCCCCCUCCUGCUCCAAGGGCCUCCUGCAUGAGGGCGC	chr12:48397992-48398254(-)$1	262	28	66	13.6214
AGUCAUUCAUCUGAAUGUGGGAGGCAAGAGGUGAGUGU	chr19:41082687-41082976(+)$1	289	174	212	11.2397
UACCGUGACGCGCUCCGGAGACGCUCUGCGGGUCCUGG	chr5:73936090-73936391(-)$1	301	5	43	11.2564
AGgggccggcaggagggugggcgaucgcgugucggagg	chr1:110527528-110527778(+)$1	250	25	63	11.9505
GCGGGCCAGCAGCAGUCGUCUCGCGUCCUCCUGCUUGG	chr5:65017641-65018010(-)$1	369	230	268	10.9896
GCGGUGGCGGCCGCUGGGUAGGUACCGGGCGGGCUGGG	chr10:92980427-92980695(+)$1	268	149	187	13.2250
GAGGCUGUAGGGUUUGGGUGUUUGCCGCGAUCUUCCUG	chr6:31830402-31830694(-)$1	292	211	249	14.1361
CCUUGGUCCUCCUGAACGUCGCAGCGGCGGGUAAGACC	chr2:85554938-85555209(-)$1	271	140	178	10.7729
GAACGGGCCGCUCUUGAAAGGGCUUUUGAAAAGUGGUG	chr20:10654312-10654572(-)$1	260	205	243	10.7246
gcgcggggcugcgcgccgccccugcuccgccgccaggc	chr2:9346821-9347174(+)$1	353	223	261	11.9421
ggcgccgccgggacgggcacgggcgcgcgggcuccggc	chr9:38068987-38069238(-)$1	251	27	65	9.6016
UGCGCGCGGCGCGCGGCUCCGGAGAGGCGCCCGCAGUC	chr6:18155595-18155901(+)$1	306	134	172	12.2408
UACAGGGGACAGAGACUGAGACACUUGCUGUCUGGCCC	chr6:31590457-31590702(+)$1	245	4	42	11.9819
UCGGGGCCUGCACCUGGAGGGAGCCUGCCGCGCUGGCC	chr1:44820601-44820994(-)$1	393	239	277	10.4983
AGAUCGAGACCGGGCCCUUCCUCGAGGCGGUGUCCCAC	chr12:110318087-110318370(-)$1	283	240	278	11.5888
GACUCGGCCGGUACGAGCCCCACggcggugcuggcggc	chr1:3541483-3541751(+)$1	268	177	215	11.1392
GGCUCGGCGggcggcggcggcggcgccggcggcuggcg	chr1:150947101-150947339(-)$1	238	56	94	12.0897
GCGGGGCGGGCCGAACGCGGGUUUCCGGCGGGGCCCGG	chr20:60877935-60878205(+)$1	270	68	106	10.7897
UGUGAGCGAGCGGCGCCUGAACACACGGCGGCUGCCGA	chr9:86322609-86322911(-)$1	302	73	111	10.7672
GAGUCCGCAGCCUGAGGUGACCACGCCGCCCGCCCGGC	chr5:158636144-158636415(-)$1	271	161	199	12.6807
CGGCUCGGACUCCGGCGGGACCUGCUCGGAGGAAUGGC	chr20:35807528-35807774(+)$1	246	198	236	9.2304
cggccgggucugcgaggcccuuggggcggcaggcggcg	chr17:79603869-79604204(-)$1	335	171	209	12.3873
GGAAAAGUGACUAUCUCGGAAGACCAGGGUAGAGCUCC	chr6:1312717-1312958(+)$1	241	66	104	10.8714
CUCCGCCCCGCUCCGGCUGCAGGCGGAGGAGCUGGGUG	chr6:117803827-117804079(+)$1	252	194	232	12.6821
GCGUAGCAGGGGGCGGAGUCUUAUUCCAACCCCGCUUC	chr1:11740991-11741294(-)$1	303	247	285	9.7544
CCGCGGCGGCGGAGGCAGGCCCCCUCCUCCCGCCUCCU	chr12:106641600-106641872(-)$1	272	41	79	11.9059
UGGCAGGGCGGGUCGGGGCGCGGGCUGCAUCCGCAUCU	chr3:52739575-52739812(-)$1	237	179	217	15.0845
CAGUGGCCCAGGGGAUGUUACGGUGGACAGUGCACCUG	chr6:42984821-42985083(+)$1	262	95	133	10.2032
UGCGGCGGCUGCCCGGGCCGGAGGUGUCUGGGCGGAGC	chr8:96037134-96037426(+)$1	292	199	237	13.2065
CCACUGCUGUGGUCGCCGGUCGGCCGAGGGGCCGCGAU	chr6:160210537-160210798(-)$1	261	209	247	13.6488

#DB
.((..((((((.(((...(....)...))).)))))).	chr11:101981383-101981718(+)$1	1	15	53	13.2037
).))(((.(((((((.(((....))).))))....)))	chr8:38325532-38325796(-)$1	1	142	180	12.5797
(((.(((..((((.(((.....))).)))).))).)))	chr16:577853-578132(+)$1	1	149	187	10.0802
(((((..((((((....(((...)))..))))))...)	chr5:110074651-110074956(+)$1	1	224	262	12.7446
((....(((((.((..(((....)))..))..))))))	chr12:102091532-102091789(+)$1	1	104	142	12.7461
(((.((((.((.(((((.(....).))))).)))))).	chr1:234745066-234745360(-)$1	1	34	72	9.9078
..((.(.(((.((.((((....)))).)).)))).)))	chr7:27702379-27702642(-)$1	1	77	115	10.8631
.((((....((((.((((....))))...))))..)))	chr2:9347075-9347336(+)$1	1	125	163	10.1520
(((.((.((((((.(((......))).)))))))).))	chr1:155036145-155036513(+)$1	1	280	318	10.8167
..(((.(((.(((...(((....)))...))).)))))	chr21:45719860-45720111(+)$1	1	74	112	15.7369
.((..(((..(((.(((....))).)))...)))..))	chr19:49954771-49955051(-)$1	1	1	39	9.4375
(((((((...((((((.((...)).))))))....)))	chr2:47142757-47143032(-)$1	1	214	252	9.3542
((.((.(((..(((.........)))..))).)).)))	chr19:8369822-8370090(-)$1	1	121	159	9.3973
(((.((.((((((.(((.(....).)))))))))))))	chr14:102430806-102431055(+)$1	1	114	152	11.8086
..(.((((((....(((((....))))).)))))).).	chr7:2472131-2472381(+)$1	1	149	187	11.5896
((.(((((...((...(((....)))..))...)))))	chr14:24605289-24605611(+)$1	1	162	200	13.0769
..(((((((((((...(((...)))...)))))))).)	chr3:48481576-48481823(+)$1	1	83	121	11.3763
(.(((..((((((((((.....))))...))))))...	chr10:127511612-127511881(-)$1	1	87	125	10.0495
(..((((((((((.(((((....))).)).)))...))	chr12:120933825-120934087(+)$1	1	49	87	14.0795
.(((.(((((((.((..(((...)))..)).))))).)	chr9:100818943-100819182(+)$1	1	95	133	11.5155
(...(((((((((..((((....))))....))).)))	chr10:105727255-105727534(+)$1	1	186	224	13.3157
(((((((((((((.(.(((.....))).).))))))).	chr1:231557496-231557824(-)$1	1	173	211	11.4420
..(((...(((((((..((....)))))))))...)))	chr16:70719787-70720053(-)$1	1	63	101	12.8017
(.((((((((..((..(((....)))..)).)))))).	chr19:14544107-14544368(+)$1	1	64	102	13.2938
(((((((((.(((.(((((....))))).))).).)))	chr2:86422416-86422662(-)$1	1	32	70	10.5114
(((.(((((((((((.(((....)))))))).))))))	chr2:178257415-178257730(+)$1	1	201	239	12.6098
.((((.(.((.((..((((....))))..)).)).).)	chr6:157802195-157802457(+)$1	1	15	53	10.9481
.(((((((((.(((((.(....).)).)))))))))))	chr22:24999062-24999312(+)$1	1	91	129	10.1784
...(((((.(((....(((....)))))).))))).))	chr12:48397992-48398254(-)$1	1	28	66	13.6214
...(((((((((...(((.....)))..))))))))))	chr19:41082687-41082976(+)$1	1	174	212	11.2397
(.(((.(((.(((...((((...))))))).))).)))	chr5:73936090-73936391(-)$1	1	5	43	11.2564
.((.(((((((.(..(((.....))).).))))....)	chr1:110527528-110527778(+)$1	1	25	63	11.9505
....((((((((.((.(((...)))..)).)))).)))	chr5:65017641-65018010(-)$1	1	230	268	10.9896
(((((..((((((((.(((....))).))).)))))..	chr10:92980427-92980695(+)$1	1	149	187	13.2250
(((((.((((((.((((((....))).)))...)))))	chr6:31830402-31830694(-)$1	1	211	249	14.1361
....((((..((((..(((....))).))))...))))	chr2:85554938-85555209(-)$1	1	140	178	10.7729
)((((.((((((.((.(((.....))).)).)))))).	chr20:10654312-10654572(-)$1	1	205	243	10.7246
(((((((((((((((..((....))..)).)))..)))	chr2:9346821-9347174(+)$1	1	223	261	11.9421
((((((((((((.((.((......)).))...))))))	chr9:38068987-38069238(-)$1	1	27	65	9.6016
.((..((((.((((..(((....))))))))))).)).	chr6:18155595-18155901(+)$1	1	134	172	12.2408
(....(((.((((.(.((((...)))).).)))).)))	chr6:31590457-31590702(+)$1	1	4	42	11.9819
((((((((.((...((((((...))).))).)).))))	chr1:44820601-44820994(-)$1	1	239	277	10.4983
((...((.((((...((((....)))))))).))....	chr12:110318087-110318370(-)$1	1	240	278	11.5888
(.((..((((((((..(((....))).)))))))))))	chr1:3541483-3541751(+)$1	1	177	215	11.1392
))(((.((.(((.((((((....)))).)).))).)).	chr1:150947101-150947339(-)$1	1	56	94	12.0897
(((.(.((((((...(((.((...)).))).)))))).	chr20:60877935-60878205(+)$1	1	68	106	10.7897
.(((..((.((((((((((....)).))).))))))).	chr9:86322609-86322911(-)$1	1	73	111	10.7672
(.(.(((..((....((((....))))....)).))))	chr5:158636144-158636415(-)$1	1	161	199	12.6807
(((((((..(((((((((...)))).)))))...))).	chr20:35807528-35807774(+)$1	1	198	236	9.2304
(.(((..((((((...((((...)))).))))))))).	chr17:79603869-79604204(-)$1	1	171	209	12.3873
((...(((..((((((.((....)).)))))).))).)	chr6:1312717-1312958(+)$1	1	66	104	10.8714
((((((((.(((((..(((....))).))))).)))))	chr6:117803827-117804079(+)$1	1	194	232	12.6821
(((.(((.((((..(((((...)))))..))))))).)	chr1:11740991-11741294(-)$1	1	247	285	9.7544
(((.((.((((((((.(((...)))))).))))).)).	chr12:106641600-106641872(-)$1	1	41	79	11.9059
.((.(((((((((.(.(((....))).))))))).)))	chr3:52739575-52739812(-)$1	1	179	217	15.0845
)))))))((((((.(((((......)))).).).))))	chr6:42984821-42985083(+)$1	1	95	133	10.2032
.((.(((.(((((((((((....).))))))))))..)	chr8:96037134-96037426(+)$1	1	199	237	13.2065
(((.((.(((((((.((((....))).).))))))).)	chr6:160210537-160210798(-)$1	1	209	247	13.6488

#PSSM
d : 0.20	[ : 0.12	g : 0.10	c : 0.10	! : 0.08	e : 0.06	# : 0.06	f : 0.06	= : 0.03	: : 0.03	& : 0.03	a : 0.01	C : 0.01	i : 0.01	h : 0.01	
d : 0.20	b : 0.12	c : 0.12	# : 0.08	[ : 0.08	! : 0.06	g : 0.06	e : 0.05	= : 0.03	f : 0.03	& : 0.03	] : 0.01	" : 0.01	i : 0.01	: : 0.01	h : 0.01	
b : 0.18	c : 0.18	d : 0.17	# : 0.06	g : 0.05	a : 0.05	" : 0.05	e : 0.03	= : 0.03	[ : 0.03	f : 0.03	& : 0.03	! : 0.01	i : 0.01	h : 0.01	
[ : 0.24	c : 0.17	b : 0.08	e : 0.08	d : 0.08	! : 0.05	# : 0.05	g : 0.05	" : 0.05	f : 0.03	i : 0.03	& : 0.01	= : 0.01	h : 0.01	
c : 0.27	d : 0.12	f : 0.10	! : 0.08	e : 0.08	b : 0.08	g : 0.05	# : 0.03	[ : 0.03	i : 0.03	" : 0.03	= : 0.01	h : 0.01	a : 0.01	
c : 0.18	[ : 0.13	f : 0.12	! : 0.10	b : 0.10	d : 0.08	g : 0.05	e : 0.05	# : 0.03	h : 0.03	i : 0.03	a : 0.01	" : 0.01	= : 0.01	
c : 0.24	f : 0.15	d : 0.08	[ : 0.08	! : 0.06	e : 0.06	g : 0.06	b : 0.06	h : 0.05	i : 0.03	# : 0.01	" : 0.01	a : 0.01	= : 0.01	
f : 0.25	e : 0.13	c : 0.12	d : 0.10	[ : 0.08	! : 0.05	h : 0.05	g : 0.05	" : 0.03	i : 0.03	b : 0.03	# : 0.01	= : 0.01	
f : 0.25	[ : 0.12	! : 0.10	c : 0.08	e : 0.08	d : 0.08	g : 0.06	" : 0.03	h : 0.03	i : 0.03	= : 0.03	# : 0.01	a : 0.01	b : 0.01	
f : 0.25	e : 0.13	d : 0.12	c : 0.06	b : 0.06	[ : 0.06	! : 0.06	g : 0.06	" : 0.03	h : 0.03	i : 0.03	= : 0.03	
f : 0.22	c : 0.17	d : 0.15	e : 0.15	b : 0.05	[ : 0.05	g : 0.05	! : 0.03	h : 0.03	# : 0.01	" : 0.01	i : 0.01	= : 0.01	
f : 0.20	c : 0.18	d : 0.15	e : 0.13	[ : 0.06	b : 0.05	g : 0.05	# : 0.03	h : 0.03	! : 0.01	i : 0.01	" : 0.01	= : 0.01	
c : 0.20	f : 0.13	d : 0.10	[ : 0.10	b : 0.08	e : 0.08	" : 0.06	# : 0.05	g : 0.05	h : 0.03	a : 0.03	! : 0.01	= : 0.01	
[ : 0.20	" : 0.15	b : 0.13	c : 0.10	e : 0.08	d : 0.06	# : 0.06	! : 0.06	f : 0.03	g : 0.03	h : 0.01	= : 0.01	
c : 0.17	! : 0.15	" : 0.13	b : 0.13	d : 0.08	e : 0.08	a : 0.06	# : 0.05	f : 0.03	r : 0.01	g : 0.01	= : 0.01	[ : 0.01	
[ : 0.17	c : 0.17	d : 0.17	! : 0.15	" : 0.10	e : 0.06	# : 0.03	f : 0.03	b : 0.03	r : 0.01	= : 0.01	a : 0.01	
c : 0.51	d : 0.22	e : 0.06	[ : 0.05	! : 0.05	" : 0.01	# : 0.01	r : 0.01	b : 0.01	= : 0.01	
c : 0.46	d : 0.20	b : 0.10	e : 0.05	n : 0.03	[ : 0.03	" : 0.01	o : 0.01	m : 0.01	r : 0.01	a : 0.01	= : 0.01	
c : 0.41	d : 0.15	b : 0.08	a : 0.06	n : 0.06	m : 0.06	e : 0.05	o : 0.03	r : 0.01	[ : 0.01	l : 0.01	
m : 0.60	n : 0.10	l : 0.10	c : 0.05	o : 0.05	d : 0.05	r : 0.01	b : 0.01	
m : 0.60	l : 0.20	n : 0.10	o : 0.05	r : 0.01	b : 0.01	
m : 0.58	l : 0.20	n : 0.10	o : 0.05	c : 0.01	r : 0.01	d : 0.01	
m : 0.53	l : 0.12	c : 0.08	d : 0.06	n : 0.06	o : 0.05	b : 0.01	r : 0.01	a : 0.01	e : 0.01	
c : 0.48	d : 0.20	b : 0.08	a : 0.06	e : 0.05	n : 0.03	o : 0.03	] : 0.01	l : 0.01	
c : 0.49	d : 0.20	b : 0.12	] : 0.08	e : 0.05	3 : 0.01	o : 0.01	
c : 0.48	d : 0.20	] : 0.06	e : 0.06	b : 0.05	3 : 0.03	2 : 0.03	f : 0.01	g : 0.01	= : 0.01	
] : 0.27	d : 0.18	2 : 0.15	c : 0.12	e : 0.10	3 : 0.08	f : 0.03	g : 0.01	= : 0.01	
c : 0.20	2 : 0.15	d : 0.10	e : 0.10	b : 0.08	] : 0.08	3 : 0.06	f : 0.05	a : 0.05	4 : 0.03	g : 0.01	h : 0.01	= : 0.01	
b : 0.18	c : 0.17	f : 0.12	d : 0.10	] : 0.08	e : 0.06	3 : 0.06	h : 0.03	4 : 0.03	a : 0.03	2 : 0.03	g : 0.01	i : 0.01	= : 0.01	
c : 0.17	f : 0.15	] : 0.15	d : 0.13	b : 0.12	e : 0.08	3 : 0.03	h : 0.03	4 : 0.03	g : 0.03	i : 0.01	= : 0.01	
] : 0.18	d : 0.15	f : 0.15	c : 0.10	e : 0.10	3 : 0.06	g : 0.05	h : 0.03	4 : 0.03	i : 0.03	2 : 0.01	b : 0.01	a : 0.01	= : 0.01	
f : 0.20	c : 0.17	d : 0.10	e : 0.10	] : 0.08	3 : 0.08	b : 0.05	g : 0.05	4 : 0.03	h : 0.03	i : 0.03	2 : 0.01	= : 0.01	
f : 0.22	c : 0.13	e : 0.10	b : 0.10	d : 0.10	3 : 0.08	] : 0.06	4 : 0.03	h : 0.03	g : 0.03	i : 0.03	a : 0.01	= : 0.01	
f : 0.22	c : 0.13	e : 0.13	d : 0.06	b : 0.06	3 : 0.06	4 : 0.05	] : 0.05	a : 0.03	2 : 0.03	h : 0.03	g : 0.03	i : 0.03	= : 0.01	
] : 0.22	f : 0.15	e : 0.13	c : 0.10	4 : 0.06	3 : 0.05	2 : 0.05	h : 0.05	d : 0.03	b : 0.03	g : 0.03	i : 0.03	= : 0.01	
c : 0.20	f : 0.13	b : 0.12	d : 0.10	e : 0.10	] : 0.05	g : 0.05	4 : 0.05	3 : 0.03	2 : 0.03	h : 0.03	i : 0.03	a : 0.01	= : 0.01	
c : 0.17	f : 0.13	d : 0.13	b : 0.13	] : 0.10	e : 0.06	4 : 0.06	g : 0.05	i : 0.03	3 : 0.01	a : 0.01	= : 0.01	h : 0.01	2 : 0.01	
c : 0.18	d : 0.17	] : 0.15	f : 0.10	e : 0.08	b : 0.06	2 : 0.05	4 : 0.05	g : 0.03	3 : 0.01	i : 0.01	= : 0.01	h : 0.01	a : 0.01	

#score	677.8302338998359
#seq	58
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_CDS_m2_run1.txt

#BEAR
bbbb[eeeee[ccc[ddddmmmmddddccceeeee]bb]b	chr22:42334996-42335253(-)$1	257	187	227	10.1010
dd[adddd[ffffff[cccmmmmccc]ffffff]dddd]a	chr1:43913837-43914092(+)$1	255	83	123	11.1502
ffffeeeee!!ffffff[bblllbbffffff]eeeee]ff	chr6:33756254-33756539(-)$1	285	119	159	10.4850
ddd!!dddd!!dddd!!cccmmmmccc22dddd22dddd2	chr5:145838484-145838743(+)$1	259	148	188	11.7236
ggg[bb[ccc[eeeeebbnnnnnbb]eeeee]ccc]bbgg	chr20:8782688-8782967(+)$1	279	112	152	9.9932
eeeee:dddd[eeeee[bbmmmmbb22eeeee]ddddddd	chr3:52489566-52489844(+)$1	278	48	88	10.8891
!!bb####ccc[ddddccclllccc]dddd]ccc333bb2	chr7:99817673-99817914(-)$1	241	123	163	12.0264
ddd[eeeee[eeeee[ddddmmmmddddeeeee]eeeee]	chr22:21212863-21213070(-)$1	207	85	125	11.1992
eeee[a[ccc!!eeeeellleeeee22ccc22a]eeeeec	chr11:6567492-6567734(+)$1	242	79	119	9.7478
d[a"""cccdddd[ddddllldddd]dddd]ccc]adddd	chr11:65732337-65732633(+)$1	296	203	243	10.6612
]dddd:eeeee[ccc"""bblllbb333ccc333eeeee:	chr16:2514456-2514696(+)$1	240	30	70	10.8280
beeeee[ddddddddbboooooobb]dddd4444dddd]e	chr3:49742889-49743138(+)$1	249	187	227	11.8121
e$$$$$ccc!!gggggggmmmmggggggg22ccc333eee	chr1:1334368-1334654(-)$1	286	150	190	9.8441
hhh!!eeeeea[dddd[bbmmmmbb]dddd22a]eeeeeh	chr7:39990403-39990620(+)$1	217	74	114	15.6310
ddd!!dddd!!dddd!!cccmmmmccc22dddd22dddd2	chr5:145838603-145838856(+)$1	253	29	69	11.7236
hhh!!eeeeea[dddd[bbmmmmbb]dddd22a]eeeeeh	chr7:39990346-39990585(+)$1	239	131	171	15.6310
ccc!!dddd[bb[cccmmmmcccbb]dddd22ccc]eeee	chr17:48545935-48546191(+)$1	256	151	191	10.5319
c[ccceeeee!!dddd[ddddllldddd]dddd333eeee	chr9:139137388-139137624(-)$1	236	3	43	10.9090
[bb[eeeeedddd"""ddddoooooodddd333dddd]ee	chr21:43166134-43166420(-)$1	286	3	43	10.8198
!a[eeeee!!dddda[ddddoooooodddd22a]dddd44	chr8:145001399-145001674(-)$1	275	181	221	11.3456
gccc[ccc[bb!!ffffffmmmmffffffbb]ccc]ccc2	chr1:1242647-1242908(-)$1	261	90	130	9.7954
ggg!!eeeeebbcccmmmmccc]bb]eeeee333gggggg	chr2:242275399-242275625(+)$1	226	152	192	8.9120
ccc!!dddd"""bb[bb[bblllbb]bb]bb333dddd]c	chr17:4686070-4686323(+)$1	253	153	193	11.6625
[bb!!dddd!!eeeeeddddmmmmdddd]eeeee]dddd2	chr20:3451908-3452141(+)$1	233	141	181	11.1535
iii!!bb!!ffffff!!bbmmmmbbffffff22bb22iii	chr17:57971044-57971293(+)$1	249	149	189	10.9889
ccbbdddd!!a[dddd[bbnnnnnbb]dddd]a22dddd]	chr4:22517180-22517449(-)$1	269	214	254	11.1052
dddd[ddddccc[eeeeemmmmeeeee]ccc]dddd]ddd	chr17:27893584-27893866(+)$1	282	120	160	9.7327
hhh!!eeeeea[dddd[bbmmmmbb]dddd22a]eeeeeh	chr7:39990420-39990644(+)$1	224	57	97	15.6310
[ffffff$$$$$ccc[cccmmmmccc]cccffffff]a44	chr4:110662032-110662271(-)$1	239	104	144	9.7727
$$$$gggggggdddd[ccclllccc]dddd22ggggggg2	chr1:247094256-247094567(-)$1	311	156	196	11.9096
hhhhh[ccc####ddddaooooooa]dddd]ccchhhhhh	chr11:64948429-64948695(-)$1	266	201	241	10.8417
hhh!!eeeeea[dddd[bbmmmmbb]dddd22a]eeeeeh	chr7:39990385-39990603(+)$1	218	92	132	15.6310
ffff"""eeeeea[eeeeemmmmeeeee]a]eeeee22ff	chr2:219563714-219563959(+)$1	245	88	128	10.0028
ii####bb[eeeee"""bblllbb333eeeeebbiiiiii	chr9:131196710-131196934(+)$1	224	167	207	10.4873
iiii[dddd[ffffff[ccclllcccffffff]dddd]ii	chr14:24780000-24780247(+)$1	247	107	147	11.4201
hhhhh$$$$$a[ccc[ccclllccc]ccc]a22hhhhhhh	chr5:453527-453835(+)$1	308	3	43	10.2353
eeeee[eeeee!!ccc[bbmmmmbbccc4444eeeeeeee	chr15:91422913-91423201(+)$1	288	197	237	13.1420
!!ffffff[a!!gggggggmmmmggggggg22affffff]	chr22:20749605-20749899(+)$1	294	111	151	10.8071
ccc[ccc!!dddd[ccc[bblllbb]cccdddd22ccc]c	chr1:43148822-43149060(+)$1	238	83	123	11.5186
=====[ffffff[a"""bbmmmmbb333a]ffffff====	chr16:69364264-69364550(-)$1	286	204	244	11.0286
ee[a[eeeeebb[cccooooooccc]bb]eeeeeaeeeee	chr19:39440774-39440991(-)$1	217	103	143	10.5724
[bb!!dddd[eeeee[bbnnnnnbb]eeeee]dddd]bb]	chr19:1433620-1433882(+)$1	262	89	129	11.1075
eeee!!dddd[a[ddddmmmmddddadddd22eeeeebb[	chr2:32582190-32582445(+)$1	255	35	75	9.8364
eee!!bb[ccc[fffffflllffffffccc]bb333eeee	chr3:52326588-52326835(+)$1	247	86	126	9.1967
cceeeee!!ccc!!ddddllldddd22ccc22eeeee]cc	chr17:40997480-40997726(+)$1	246	96	136	10.5965
cc!!dddd!!dddd!!cccmmmmccc22dddd22dddd22	chr5:145838549-145838799(+)$1	250	162	202	12.1928
dd!!aeeeeecccrrrrrrrrrccc]eeeee]a22dddd:	chr20:34241104-34241320(-)$1	216	169	209	8.6787
[bbccc[dddd[cccddddmmmmdddd]ccc]ddddccc]	chr16:89804984-89805232(+)$1	248	79	119	11.1047
fffffdddd"""ccc[cccmmmmccccccdddd22fffff	chr2:192711260-192711521(+)$1	261	20	60	11.3917
eee[bb!!ccc[a[eeeeemmmmeeeee]a]cccbb22ee	chr3:38178318-38178585(-)$1	267	147	187	9.4817
hhh####eeeee!!bb[bbmmmmbb]bb22eeeee22hhh	chr19:46388362-46388641(-)$1	279	56	96	10.7710
iiii[dddd[ffffff[ccclllcccffffff]dddd]ii	chr14:24780047-24780270(+)$1	223	60	100	11.4201
!eeeee[ccc"""bb[cccmmmmccc]bb333ccc]eeee	chr14:24884042-24884261(+)$1	219	91	131	12.0640
##dddd[eeeeeddddccclllccc]dddd333eeeee]d	chr15:65425419-65425706(-)$1	287	73	113	13.1268

#otherMatches

#Seq PSSM
CCUGUGAGGGUGGCUGGCCCCUGGGCUGCCCCUUCUCAUG	chr22:42334996-42335253(-)$1	257	187	227	10.1010
UCCUCUGUUCCCACCACUGGCUGCAGAGGUGGGCAUGGCA	chr1:43913837-43914092(+)$1	255	83	123	11.1502
GGCCCGCCGCUGGUGGGCAGCGUCUCCCGCCCCGGCGCGG	chr6:33756254-33756539(-)$1	285	119	159	10.4850
gcucaggcccaggcccaggcccaggcccaggcccaggccc	chr5:145838484-145838743(+)$1	259	148	188	11.7236
ACCACCGUCCUUCCGGCCAGGUAGGACUGGAUGGGAGGGG	chr20:8782688-8782967(+)$1	279	112	152	9.9932
CUGCUAGUCUGCGCCGGGCGGCGGUGGCGGCGGAGACCCG	chr3:52489566-52489844(+)$1	278	48	88	10.8891
AAGGACGAGAGCUCGGUGGCCUCCAUCCGAACUUGAACCC	chr7:99817673-99817914(-)$1	241	123	163	12.0264
gaggcggaggcggaggcggcggcggcugcuccggcuccgg	chr22:21212863-21213070(-)$1	207	85	125	11.1992
UGGCUGUCUCCUGGUACUGCGUGCCCUGAGCUCUGCUGUG	chr11:6567492-6567734(+)$1	242	79	119	9.7478
CACGUCUGGGCCCCCCUUCCAGAGGCGGGCACCAAGGAGG	chr11:65732337-65732633(+)$1	296	203	243	10.6612
CCCUGAGACCUUGGCCCUGCCCUGCCCUGCCCCCAGGUCC	chr16:2514456-2514696(+)$1	240	30	70	10.8280
AUGUACAACCUCAGCGUACACCAGCAGCUGGGCAAGGUCG	chr3:49742889-49743138(+)$1	249	187	227	11.8121
CACGCCGUCCAUGUCGAGCGGCCUCGACACCGACACAGAG	chr1:1334368-1334654(-)$1	286	150	190	9.8441
UGCUUCAGCCCGGGCCCCCCUCUGGAGGUCAAGCGGCUGG	chr7:39990403-39990620(+)$1	217	74	114	15.6310
gcucaggcccaggcccaggcccaggcccaggcccaggccc	chr5:145838603-145838856(+)$1	253	29	69	11.7236
UGCUUCAGCCCGGGCCCCCCUCUGGAGGUCAAGCGGCUGG	chr7:39990346-39990585(+)$1	239	131	171	15.6310
GGCAGUGGCAGUUCUGGGGGCAGGCGGCCAGCGCCGGCAG	chr17:48545935-48546191(+)$1	256	151	191	10.5319
gcagcccgggAAUCGGAGCGGGACCUGCGCUGAGAgcccg	chr9:139137388-139137624(-)$1	236	3	43	10.9090
AGUUGACUUCCUGGGACAGAUGUGUCUCUGGCAUAGGAAA	chr21:43166134-43166420(-)$1	286	3	43	10.8198
AGGAGAUCGAGCGCCACGGCGAGAAGGUCGAGGAGUGCCA	chr8:145001399-145001674(-)$1	275	181	221	11.3456
CGUCUGGGUCCGUGGGGGCGUCGGCCCCUGGUCUCUGACU	chr1:1242647-1242908(-)$1	261	90	130	9.7954
UUAAUAUACUUCAUAAAUUUAUAGAUAGUGUUAAUGAGUG	chr2:242275399-242275625(+)$1	226	152	192	8.9120
GCUCUUCUCGCUGCUGGUGGCCGCCUCCUGCCUGGAGAUA	chr17:4686070-4686323(+)$1	253	153	193	11.6625
AGGAAUGUGACCGGCCCUGUGUCAACGGCGGUCGCUGCAA	chr20:3451908-3452141(+)$1	233	141	181	11.1535
CUGUCGGGAGUAGCACUGCCGCUGCUGUUACAGCCACCAG	chr17:57971044-57971293(+)$1	249	149	189	10.9889
CCGCCGAGGGCAAGGUGGUGUGCAGCAGCCUGGAACUCGC	chr4:22517180-22517449(-)$1	269	214	254	11.1052
CCAGCGCCUCUGAGCGCCGCAGGGCGCGCAGCAGGCACUG	chr17:27893584-27893866(+)$1	282	120	160	9.7327
UGCUUCAGCCCGGGCCCCCCUCUGGAGGUCAAGCGGCUGG	chr7:39990420-39990644(+)$1	224	57	97	15.6310
GUUGGGGGGAAAACUGUGGAAAACCAGAGUUCCCAGGUGU	chr4:110662032-110662271(-)$1	239	104	144	9.7727
AAGAAGUUGGACUCGGGGCUCAGCCGUGAGGUUCCAGCUC	chr1:247094256-247094567(-)$1	311	156	196	11.9096
GAGGGCGGCAGAGGCUGCGAGCAGGACGGCAGCCCCCUCU	chr11:64948429-64948695(-)$1	266	201	241	10.8417
UGCUUCAGCCCGGGCCCCCCUCUGGAGGUCAAGCGGCUGG	chr7:39990385-39990603(+)$1	218	92	132	15.6310
CAGCCUACCAGGCUGGUCCUCUGGGACCUGCCCUGGCAGC	chr2:219563714-219563959(+)$1	245	88	128	10.0028
CGACCAGCACCCCAAGUGAGGCUCUGAUGGGGGCCGGGCA	chr9:131196710-131196934(+)$1	224	167	207	10.4873
GCCUUCCUGACCCGGCAGGCCUGGCCGCUGGGCCAGGCGG	chr14:24780000-24780247(+)$1	247	107	147	11.4201
ACUCCUGCAAGCCCACCGGAAGCUGAUGGACCUGGAGUGC	chr5:453527-453835(+)$1	308	3	43	10.2353
GGCUACGGGCUUUUGGACGCAGGCGCCAUGGUGGCCCUGG	chr15:91422913-91423201(+)$1	288	197	237	13.1420
CUGUGUGUUCUUCCUUCUUUAUGAAGAGGGUUGGCACAUU	chr22:20749605-20749899(+)$1	294	111	151	10.8071
UGUGCGGCGGCGGCGGCGACUGCGUGGCCCCGCACCCGGG	chr1:43148822-43149060(+)$1	238	83	123	11.5186
CGCUGCGGCGCUCCUAUUGGCGCCACCUGAGGCGUCUGGU	chr16:69364264-69364550(-)$1	286	204	244	11.0286
GCUGCUGGUGCAGGUGCUGAGCCACGUGCCGCCACGCUCC	chr19:39440774-39440991(-)$1	217	103	143	10.5724
UGGUCACCCUGGUCUCGUCUCUUGCCAGGCCUGGGUUCCU	chr19:1433620-1433882(+)$1	262	89	129	11.1075
CCGGAUGGUGACUGGUGGUGGUGCUGCACCUCCCGGGACU	chr2:32582190-32582445(+)$1	255	35	75	9.8364
GAGGAAGAUGCACAGCUCCAUGAGCUGGCAGCUGAGCUUC	chr3:52326588-52326835(+)$1	247	86	126	9.1967
CCCCAGGGUUCCCAGUACAGUGUGCAAGGAAACCUGGUGG	chr17:40997480-40997726(+)$1	246	96	136	10.5965
cucaggcccaggcccaggcucagguccaggcccaggucca	chr5:145838549-145838799(+)$1	250	162	202	12.1928
UAGUGCAGGAGGUGAAGAGCAUGCCUUCCUGACUGUAGGA	chr20:34241104-34241320(-)$1	216	169	209	8.6787
CUCUGGAGGGCGGCGCUCACCUCUGGGUCGCAGUCCCCAC	chr16:89804984-89805232(+)$1	248	79	119	11.1047
UGGGCGCUGACCUUGCGGGACUUCUCCAGCAGCUUGCUCA	chr2:192711260-192711521(+)$1	261	20	60	11.3917
CCCCGCAGGCCUCGGCCGCGGACGUGGUGGUGGUGCACGG	chr3:38178318-38178585(-)$1	267	147	187	9.4817
GCGCGAAGGGCCUUGCUUGGCUCCAUGCCUGGCUUGAUGC	chr19:46388362-46388641(-)$1	279	56	96	10.7710
GCCUUCCUGACCCGGCAGGCCUGGCCGCUGGGCCAGGCGG	chr14:24780047-24780270(+)$1	223	60	100	11.4201
CAGCUUCUCCCUACCUGGGCAUCCCCUGGGAUGGAAAGGC	chr14:24884042-24884261(+)$1	219	91	131	12.0640
CAGCGCACGCAUGCCGGGCCCAGCCUUGGCGAAGUGCGCG	chr15:65425419-65425706(-)$1	287	73	113	13.1268

#DB
((((.(((((.(((.((((....)))))))))))).)).)	chr22:42334996-42335253(-)$1	1	187	227	10.1010
((.(((((.((((((.(((....))).)))))).)))).)	chr1:43913837-43914092(+)$1	1	83	123	11.1502
(((((((((..((((((.((...)))))))).))))).))	chr6:33756254-33756539(-)$1	1	119	159	10.4850
(((..((((..((((..(((....)))..))))..)))).	chr5:145838484-145838743(+)$1	1	148	188	11.7236
(((.((.(((.(((((((.....)).))))).))).))))	chr20:8782688-8782967(+)$1	1	112	152	9.9932
))))).((((.(((((.((....))..))))).))))(((	chr3:52489566-52489844(+)$1	1	48	88	10.8891
..((....(((.(((((((...))).)))).)))...)).	chr7:99817673-99817914(-)$1	1	123	163	12.0264
(((.(((((.(((((.((((....))))))))).))))).	chr22:21212863-21213070(-)$1	1	85	125	11.1992
((((.(.(((..(((((...)))))..)))..).))))))	chr11:6567492-6567734(+)$1	1	79	119	9.7478
(.(...(((((((.((((...)))).)))).))).)))))	chr11:65732337-65732633(+)$1	1	203	243	10.6612
.)))).(((((.(((...((...))...)))...))))).	chr16:2514456-2514696(+)$1	1	30	70	10.8280
((((((.((((((((((......)).))))....)))).)	chr3:49742889-49743138(+)$1	1	187	227	11.8121
(.....(((..(((((((....)))))))..)))...)))	chr1:1334368-1334654(-)$1	1	150	190	9.8441
(((..((((((.((((.((....)).))))..).))))))	chr7:39990403-39990620(+)$1	1	74	114	15.6310
(((..((((..((((..(((....)))..))))..)))).	chr5:145838603-145838856(+)$1	1	29	69	11.7236
(((..((((((.((((.((....)).))))..).))))))	chr7:39990346-39990585(+)$1	1	131	171	15.6310
(((..((((.((.(((....))))).))))..))).))))	chr17:48545935-48546191(+)$1	1	151	191	10.5319
(.((((((((..((((.((((...)))).))))...))))	chr9:139137388-139137624(-)$1	1	3	43	10.9090
.((.(((((((((...((((......))))...)))).))	chr21:43166134-43166420(-)$1	1	3	43	10.8198
.(.(((((..(((((.((((......))))..).))))..	chr8:145001399-145001674(-)$1	1	181	221	11.3456
((((.(((.((..((((((....)))))))).))).))).	chr1:1242647-1242908(-)$1	1	90	130	9.7954
(((..((((((((((....))).)).)))))...))))))	chr2:242275399-242275625(+)$1	1	152	192	8.9120
(((..((((...((.((.((...)).)).))...)))).)	chr17:4686070-4686323(+)$1	1	153	193	11.6625
.((..((((..(((((((((....)))).))))).)))).	chr20:3451908-3452141(+)$1	1	141	181	11.1535
(((..((..((((((..((....))))))))..))..)))	chr17:57971044-57971293(+)$1	1	149	189	10.9889
((((((((..(.((((.((.....)).)))).)..)))).	chr4:22517180-22517449(-)$1	1	214	254	11.1052
((((.(((((((.(((((....))))).))).)))).)))	chr17:27893584-27893866(+)$1	1	120	160	9.7327
(((..((((((.((((.((....)).))))..).))))))	chr7:39990420-39990644(+)$1	1	57	97	15.6310
.((((((.....(((.(((....))).))))))))).)..	chr4:110662032-110662271(-)$1	1	104	144	9.7727
....(((((((((((.(((...))).))))..))))))).	chr1:247094256-247094567(-)$1	1	156	196	11.9096
(((((.(((....(((((......).)))).)))))))))	chr11:64948429-64948695(-)$1	1	201	241	10.8417
(((..((((((.((((.((....)).))))..).))))))	chr7:39990385-39990603(+)$1	1	92	132	15.6310
((((...((((((.(((((....))))).).)))))..))	chr2:219563714-219563959(+)$1	1	88	128	10.0028
((....((.(((((...((...))...)))))))))))))	chr9:131196710-131196934(+)$1	1	167	207	10.4873
((((.((((.((((((.(((...))))))))).)))).))	chr14:24780000-24780247(+)$1	1	107	147	11.4201
(((((.....(.(((.(((...))).))).)..)))))))	chr5:453527-453835(+)$1	1	3	43	10.2353
(((((.(((((..(((.((....)))))....))))))))	chr15:91422913-91423201(+)$1	1	197	237	13.1420
..((((((.(..(((((((....)))))))..))))))).	chr22:20749605-20749899(+)$1	1	111	151	10.8071
(((.(((..((((.(((.((...)).)))))))..))).)	chr1:43148822-43149060(+)$1	1	83	123	11.5186
(((((.((((((.(...((....))...).))))))))))	chr16:69364264-69364550(-)$1	1	204	244	11.0286
((.(.(((((((.(((......))).)).)))))))))))	chr19:39440774-39440991(-)$1	1	103	143	10.5724
.((..((((.(((((.((.....)).))))).)))).)).	chr19:1433620-1433882(+)$1	1	89	129	11.1075
((((..((((.(.((((....)))))))))..)))))((.	chr2:32582190-32582445(+)$1	1	35	75	9.8364
(((..((.(((.((((((...))))))))).))...))))	chr3:52326588-52326835(+)$1	1	86	126	9.1967
(((((((..(((..((((...))))..)))..))))).))	chr17:40997480-40997726(+)$1	1	96	136	10.5965
((..((((..((((..(((....)))..))))..))))..	chr5:145838549-145838799(+)$1	1	162	202	12.1928
((..(((((((((.........))).))))).)..)))).	chr20:34241104-34241320(-)$1	1	169	209	8.6787
.(((((.((((.(((((((....)))).))).))))))).	chr16:89804984-89805232(+)$1	1	79	119	11.1047
(((((((((...(((.(((....))))))))))..)))))	chr2:192711260-192711521(+)$1	1	20	60	11.3917
(((.((..(((.(.(((((....))))).).)))))..))	chr3:38178318-38178585(-)$1	1	147	187	9.4817
(((....(((((..((.((....)).))..)))))..)))	chr19:46388362-46388641(-)$1	1	56	96	10.7710
((((.((((.((((((.(((...))))))))).)))).))	chr14:24780047-24780270(+)$1	1	60	100	11.4201
.(((((.(((...((.(((....))).))...))).))))	chr14:24884042-24884261(+)$1	1	91	131	12.0640
..((((.((((((((((((...))).))))...))))).)	chr15:65425419-65425706(-)$1	1	73	113	13.1268

#PSSM
e : 0.14	d : 0.12	h : 0.12	c : 0.12	[ : 0.09	! : 0.07	i : 0.07	f : 0.05	g : 0.05	b : 0.03	] : 0.01	$ : 0.01	= : 0.01	# : 0.01	
e : 0.16	d : 0.12	h : 0.12	c : 0.12	b : 0.09	f : 0.07	i : 0.07	g : 0.03	! : 0.03	[ : 0.03	$ : 0.03	a : 0.01	= : 0.01	# : 0.01	
e : 0.16	b : 0.12	h : 0.12	d : 0.11	f : 0.09	c : 0.09	[ : 0.05	i : 0.05	g : 0.03	$ : 0.03	! : 0.03	a : 0.01	# : 0.01	= : 0.01	
! : 0.27	e : 0.14	f : 0.09	[ : 0.09	b : 0.05	d : 0.05	c : 0.05	a : 0.03	$ : 0.03	h : 0.03	# : 0.03	i : 0.03	" : 0.01	= : 0.01	
! : 0.25	e : 0.16	[ : 0.12	d : 0.09	# : 0.05	c : 0.05	f : 0.05	b : 0.03	" : 0.03	h : 0.03	$ : 0.01	g : 0.01	= : 0.01	a : 0.01	
e : 0.29	d : 0.25	b : 0.07	# : 0.05	c : 0.05	[ : 0.05	: : 0.03	" : 0.03	$ : 0.03	f : 0.03	a : 0.01	g : 0.01	! : 0.01	
e : 0.29	d : 0.27	[ : 0.11	c : 0.09	b : 0.05	f : 0.05	# : 0.03	g : 0.01	" : 0.01	$ : 0.01	! : 0.01	
e : 0.33	d : 0.31	c : 0.12	! : 0.07	$ : 0.03	f : 0.03	# : 0.01	g : 0.01	b : 0.01	[ : 0.01	
e : 0.31	d : 0.25	c : 0.16	! : 0.11	[ : 0.07	$ : 0.03	g : 0.01	f : 0.01	
e : 0.27	! : 0.14	c : 0.14	d : 0.12	[ : 0.09	f : 0.05	" : 0.03	$ : 0.03	b : 0.01	g : 0.01	# : 0.01	a : 0.01	
! : 0.14	e : 0.14	d : 0.12	c : 0.11	a : 0.11	f : 0.09	[ : 0.07	b : 0.07	" : 0.05	$ : 0.01	g : 0.01	# : 0.01	
[ : 0.20	d : 0.16	e : 0.16	f : 0.11	! : 0.09	c : 0.07	b : 0.05	" : 0.05	g : 0.01	$ : 0.01	# : 0.01	a : 0.01	
d : 0.31	c : 0.14	e : 0.12	f : 0.11	[ : 0.09	! : 0.07	g : 0.03	a : 0.03	b : 0.01	# : 0.01	" : 0.01	
d : 0.29	c : 0.18	e : 0.14	f : 0.12	[ : 0.07	g : 0.03	b : 0.03	! : 0.03	" : 0.01	a : 0.01	r : 0.01	
d : 0.29	c : 0.18	e : 0.16	f : 0.12	" : 0.05	[ : 0.03	g : 0.03	b : 0.03	a : 0.01	! : 0.01	r : 0.01	
d : 0.25	[ : 0.16	e : 0.12	f : 0.09	! : 0.07	" : 0.07	c : 0.07	b : 0.05	g : 0.03	m : 0.01	r : 0.01	
[ : 0.20	d : 0.18	c : 0.18	b : 0.07	e : 0.07	f : 0.05	! : 0.05	" : 0.05	g : 0.03	m : 0.03	o : 0.01	r : 0.01	
c : 0.24	b : 0.24	d : 0.16	[ : 0.05	m : 0.05	e : 0.05	o : 0.03	g : 0.03	f : 0.03	l : 0.01	" : 0.01	a : 0.01	r : 0.01	
b : 0.27	c : 0.24	d : 0.12	m : 0.09	l : 0.07	o : 0.05	n : 0.03	e : 0.03	f : 0.01	g : 0.01	r : 0.01	
m : 0.44	l : 0.16	c : 0.09	d : 0.09	b : 0.07	n : 0.05	o : 0.05	r : 0.01	
m : 0.49	l : 0.25	o : 0.09	n : 0.05	c : 0.03	e : 0.01	d : 0.01	r : 0.01	
m : 0.48	l : 0.22	o : 0.09	n : 0.05	d : 0.05	c : 0.03	e : 0.01	f : 0.01	r : 0.01	
m : 0.44	l : 0.12	c : 0.12	o : 0.07	n : 0.05	d : 0.05	e : 0.03	g : 0.01	] : 0.01	b : 0.01	f : 0.01	
b : 0.35	c : 0.24	d : 0.09	m : 0.07	e : 0.07	o : 0.05	g : 0.03	f : 0.03	l : 0.01	n : 0.01	
b : 0.35	c : 0.27	d : 0.14	e : 0.07	g : 0.03	o : 0.03	f : 0.03	a : 0.01	3 : 0.01	
] : 0.37	c : 0.18	d : 0.09	f : 0.07	2 : 0.05	3 : 0.05	e : 0.05	g : 0.03	o : 0.03	b : 0.01	a : 0.01	
d : 0.35	e : 0.12	f : 0.11	c : 0.11	] : 0.07	2 : 0.07	3 : 0.05	b : 0.05	g : 0.03	
d : 0.33	c : 0.16	e : 0.14	f : 0.11	b : 0.07	2 : 0.05	3 : 0.03	g : 0.03	] : 0.03	
d : 0.29	c : 0.20	e : 0.12	f : 0.11	] : 0.11	2 : 0.05	g : 0.03	4 : 0.01	a : 0.01	b : 0.01	
d : 0.38	e : 0.16	c : 0.14	f : 0.09	2 : 0.03	b : 0.03	a : 0.03	] : 0.03	4 : 0.01	g : 0.01	3 : 0.01	
2 : 0.22	e : 0.20	f : 0.12	d : 0.12	] : 0.11	c : 0.05	3 : 0.05	4 : 0.03	b : 0.03	a : 0.01	
2 : 0.24	e : 0.14	] : 0.14	d : 0.11	3 : 0.11	f : 0.09	c : 0.09	4 : 0.03	b : 0.01	
e : 0.18	c : 0.16	a : 0.16	d : 0.14	3 : 0.09	f : 0.05	] : 0.05	2 : 0.05	b : 0.03	4 : 0.01	g : 0.01	
e : 0.18	c : 0.16	] : 0.14	2 : 0.12	d : 0.12	3 : 0.09	f : 0.05	b : 0.03	4 : 0.01	g : 0.01	h : 0.01	
e : 0.27	d : 0.22	2 : 0.11	c : 0.07	3 : 0.07	f : 0.05	] : 0.03	g : 0.03	b : 0.03	h : 0.03	i : 0.01	a : 0.01	
d : 0.31	e : 0.25	] : 0.09	3 : 0.07	f : 0.07	g : 0.03	2 : 0.03	h : 0.03	a : 0.01	i : 0.01	c : 0.01	b : 0.01	
e : 0.31	d : 0.27	2 : 0.07	c : 0.05	] : 0.05	b : 0.03	3 : 0.03	g : 0.03	h : 0.03	f : 0.03	i : 0.01	= : 0.01	
e : 0.27	d : 0.24	b : 0.09	] : 0.09	c : 0.05	h : 0.05	g : 0.03	i : 0.03	2 : 0.03	f : 0.03	a : 0.01	= : 0.01	
e : 0.29	d : 0.14	] : 0.11	f : 0.07	i : 0.07	g : 0.05	b : 0.05	c : 0.05	h : 0.05	4 : 0.03	= : 0.01	2 : 0.01	
e : 0.18	2 : 0.12	h : 0.12	] : 0.09	d : 0.07	c : 0.07	i : 0.07	f : 0.05	g : 0.03	: : 0.03	4 : 0.03	b : 0.01	a : 0.01	= : 0.01	[ : 0.01	

#score	604.3747437850961
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_UTR_m1_run1.txt

#BEAR
ffff[fffffftttttttttttffffff22f	chr2:202005157-202005455(+)$1	298	60	91	24.6134
ggg"""dddduuuuuuuuuuuudddd333gg	chr4:25279767-25280046(+)$1	279	136	167	24.3125
===========ttttttttttt=========	chr17:30697019-30697271(+)$1	252	213	244	26.4135
b[iiiiiiiiiuuuuuuuuuuuuiiiiiiii	chr4:17818960-17819267(+)$1	307	192	223	25.6796
iiiiiiiiiyyyyyyyyyyyyyyyyiiiiii	chr17:74730943-74731181(-)$1	238	34	65	24.3498
cc"""cccwwwwwwwwwwwwwwcccccc]bb	chr15:59296191-59296488(+)$1	297	100	131	23.1144
ccc[eeeeevvvvvvvvvvvvveeeeecccd	chr1:14095325-14095743(+)$1	418	58	89	23.7050
ccc[ffffffuuuuuuuuuuuuffffff]cc	chr11:95502175-95502454(-)$1	279	234	265	25.3996
####cccddddtttttttttttdddd]ccc3	chr10:64927421-64927685(-)$1	264	222	253	24.6766
((ffffffwwwwwwwwwwwwwwffffff22b	chr6:150046099-150046359(-)$1	260	98	129	21.2659
eeeeecccccctttttttttttccc]ccc]e	chr1:227085859-227086161(+)$1	302	243	274	24.3574
e"""ffffffuuuuuuuuuuuuffffff888	chr2:33036184-33036498(+)$1	314	48	79	24.6460
f[bb[fffffftttttttttttffffff]bb	chr6:125412862-125413203(+)$1	341	181	212	24.9026
dd$$$$$cccuuuuuuuuuuuucccddddff	chr7:139789584-139789910(-)$1	326	98	129	22.9096
==========yyyyyyyyyyyyyyyy=====	chr19:21560375-21560650(+)$1	275	224	255	24.3994
fff[gggggggtttttttttttggggggg22	chr21:17252131-17252420(+)$1	289	83	114	25.3530
dddd[eeeeeuuuuuuuuuuuueeeee]ddd	chr19:12299680-12300134(+)$1	454	10	41	23.4250
c[iiiiiiiiivvvvvvvvvvvvviiiiiii	chr21:30399978-30400315(+)$1	337	218	249	24.9601
::::ggggggguuuuuuuuuuuuggggggg:	chr15:35148769-35149028(-)$1	259	202	233	21.4658
FF:ffffff[auuuuuuuuuuuuaffffff:	chr12:67704645-67704892(+)$1	247	78	109	22.5438
c"""cccddddvvvvvvvvvvvvvdddd000	chr1:220383925-220384252(-)$1	327	161	192	22.5864
::::ggggggguuuuuuuuuuuuggggggg:	chr17:74731957-74732208(-)$1	251	34	65	21.4658
bb"""fffffftttttttttttffffff]bb	chr12:50397986-50398238(-)$1	252	80	111	25.3207
g####fffffftttttttttttffffff333	chr10:24885459-24885736(-)$1	277	163	194	26.5147
%%%%ffffffvvvvvvvvvvvvvffffff44	chr2:70169809-70170158(+)$1	349	94	125	23.1254
"bb!!fffffftttttttttttffffff444	chr1:186283172-186283458(-)$1	286	33	64	25.5412
iiiiiii[cccuuuuuuuuuuuuccc]iiii	chr1:54509160-54509441(-)$1	281	206	237	25.7098
ffffffffffuuuuuuuuuuuuffffff]ff	chr1:26605104-26605389(+)$1	285	103	134	24.4127
::iiiiiiiiitttttttttttiiiiiiiii	chr4:48566919-48567171(-)$1	252	57	88	24.0093
eeeeeeeyyyyyyyyyyyyyyyyeeeee]ee	chr2:38790738-38790972(-)$1	234	56	87	22.2272
####gggggggyyyyyyyyyyyyyyyygggg	chr10:59951284-59951610(-)$1	326	209	240	23.2802
eee[eeeeewwwwwwwwwwwwwweeeeeeee	chr4:17846932-17847255(-)$1	323	132	163	22.6418
gggggggyyyyyyyyyyyyyyyygggggggF	chr3:194995446-194995701(-)$1	255	198	229	23.2745
eea[eeeeevvvvvvvvvvvvveeeee]a]e	chr10:126630771-126631137(+)$1	366	44	75	23.7900
h!!hhhhhhhhuuuuuuuuuuuuhhhhhhhh	chr2:44115542-44115786(-)$1	244	116	147	21.9334
eee[eeeeevvvvvvvvvvvvveeeee]eee	chr4:128960600-128960833(+)$1	233	121	152	23.3247
####eeeeeyyyyyyyyyyyyyyyyeeeeeb	chr16:24227152-24227401(+)$1	249	113	144	23.6183
iiiiiiiiiyyyyyyyyyyyyyyyyiiiiii	chr17:74731035-74731256(-)$1	221	109	140	24.3498
!!iiiiiiiiiwwwwwwwwwwwwwwiiiiii	chr3:140681999-140682229(+)$1	230	14	45	23.6986
!!ccc[eeeeeuuuuuuuuuuuueeeeeccc	chr15:80423576-80423861(+)$1	285	162	193	24.6988
cc"""eeeeeuuuuuuuuuuuueeeee333c	chr4:41962372-41962643(+)$1	271	138	169	25.7265
hhhh!!eeeeettttttttttteeeee6666	chr15:32929909-32930173(+)$1	264	150	181	22.2396
fff[ddddcccvvvvvvvvvvvvvccc]ddd	chr3:182637110-182637359(+)$1	249	189	220	22.8721
###ccc[dddduuuuuuuuuuuudddd]ccc	chr10:75003172-75003499(-)$1	327	43	74	24.2052
ccc[ffffffuuuuuuuuuuuuffffff]cc	chr11:95502056-95502327(-)$1	271	107	138	25.3996
==========uuuuuuuuuuuu=========	chr6:350587-350948(+)$1	361	19	50	26.2589
===========ttttttttttt=========	chr17:30697133-30697352(+)$1	219	99	130	26.4135
ee!!ccccccuuuuuuuuuuuuccc22ccc2	chr11:32996918-32997236(+)$1	318	274	305	24.3682
))))gggggggtttttttttttggggggg44	chr6:136581996-136582219(-)$1	223	100	131	24.4714
c####ffffffvvvvvvvvvvvvvffffff5	chr18:70827368-70827643(-)$1	275	63	94	24.1449
ffff[fffffftttttttttttffffff>>>	chr2:44457059-44457392(+)$1	333	132	163	24.4926
::::ggggggguuuuuuuuuuuuggggggg:	chr13:33091099-33091374(-)$1	275	27	58	21.4658
dddffffffvvvvvvvvvvvvvffffff22d	chr21:34821253-34821486(-)$1	233	134	165	23.1829
eee"""eeeeettttttttttteeeeeeeee	chr4:83382022-83382323(+)$1	301	269	300	24.2141
iiiibb!!cccvvvvvvvvvvvvvccc22bb	chr12:96671952-96672240(-)$1	288	108	139	23.1467
c"""gggggggtttttttttttgggggggcc	chr1:93826200-93826433(+)$1	233	26	57	26.4058
ccc[gggggggtttttttttttggggggg]c	chr16:89835980-89836236(-)$1	256	111	142	25.9358
f[bbcccyyyyyyyyyyyyyyyyccc333bb	chr20:5527209-5527510(-)$1	301	136	167	22.8003
c!!bb[ddddwwwwwwwwwwwwwwdddd]bb	chr4:103746450-103746709(-)$1	259	163	194	22.1250
=========[auuuuuuuuuuuua]======	chr2:152331907-152332135(+)$1	228	60	91	26.3867
:::ggggggguuuuuuuuuuuugggggggdd	chr17:49039719-49040008(-)$1	289	210	241	22.7000
f[eeeee[cccvvvvvvvvvvvvvccc333e	chr21:34821224-34821453(-)$1	229	184	215	24.1759
ff!!ccc[ccctttttttttttccc]ccc22	chr4:142155397-142155660(+)$1	263	116	147	25.2151

#otherMatches

#Seq PSSM
UAAAAAUAUGCAUAUUCUCACAGCAUGUACU	chr2:202005157-202005455(+)$1	298	60	91	24.6134
UUGUAACAUUGUUAAUGCACUAAGUGAUUUA	chr4:25279767-25280046(+)$1	279	136	167	24.3125
UCUGAAUGUGUAACAAUAUUUAAUGUAUUUA	chr17:30697019-30697271(+)$1	252	213	244	26.4135
GCUUAAGAUUAUAUUAAUACCUUUAAUCUUA	chr4:17818960-17819267(+)$1	307	192	223	25.6796
AAAAGGUUAUUUUGUAACAUUUGUCUAACUU	chr17:74730943-74731181(-)$1	238	34	65	24.3498
CUCUUGGAUUUAUUUAUUUUAUUCCAGUGUG	chr15:59296191-59296488(+)$1	297	100	131	23.1144
UACAUUGGUCUUAUUCUCAGCAACUAAGUAC	chr1:14095325-14095743(+)$1	418	58	89	23.7050
ACAUGUAUAGACUAUUGAAAUACUGUACUUG	chr11:95502175-95502454(-)$1	279	234	265	25.3996
CCUUGUACAGUUUACUAAAAUUACUGAUAUU	chr10:64927421-64927685(-)$1	264	222	253	24.6766
CAAGUUUUGCCAAUUUUAAUAAGAAACUAAG	chr6:150046099-150046359(-)$1	260	98	129	21.2659
AUUGGAAUUCCCCCAAuugacuggacauucc	chr1:227085859-227086161(+)$1	302	243	274	24.3574
UGUAUGCCCACGUAUAUGGAAAUGGGCAGAG	chr2:33036184-33036498(+)$1	314	48	79	24.6460
GUGCCUUUUGUUUUAGCUUUAUACAAAAUGC	chr6:125412862-125413203(+)$1	341	181	212	24.9026
UUAUGCUCCAUACCUGAUUUGUUGGGAAAUG	chr7:139789584-139789910(-)$1	326	98	129	22.9096
uuuuuaauaauuuuaaauaaauuucuuuauu	chr19:21560375-21560650(+)$1	275	224	255	24.3994
UUUUGCAUAUUGUAUCUAUCAAAAUAUGUUU	chr21:17252131-17252420(+)$1	289	83	114	25.3530
GGGUCAUGUAGUCUCUAGAAAAUACAUAACC	chr19:12299680-12300134(+)$1	454	10	41	23.4250
GUUAUUUUGUGUCAGUAAGUAAUCCAUAAAG	chr21:30399978-30400315(+)$1	337	218	249	24.9601
UGUAUGAACAAUUCUAGUUUCAUUUGUUCAA	chr15:35148769-35149028(-)$1	259	202	233	21.4658
GUGUGUUCGUCUCCAUUUAAAAUGUGAACAG	chr12:67704645-67704892(+)$1	247	78	109	22.5438
UUAUGCAUCACCUUUAUACUGUUUGUGACUU	chr1:220383925-220384252(-)$1	327	161	192	22.5864
UUUUGAGUCGUGUUAAUGUAAGAAUGACUCC	chr17:74731957-74732208(-)$1	251	34	65	21.4658
GUUCUGAAUGUUGGUGAAUUUUACAUUCCAC	chr12:50397986-50398238(-)$1	252	80	111	25.3207
GUCAAUCUGUUUUCCUUUUCAUAGCAGACCU	chr10:24885459-24885736(-)$1	277	163	194	26.5147
AAUAUGACGCCAAUGUAAAUCCUGUGUCAAG	chr2:70169809-70170158(+)$1	349	94	125	23.1254
CACGAUAAAGCUUUGUGAUUAUGUUUUAGCU	chr1:186283172-186283458(-)$1	286	33	64	25.5412
aaaauaauauauuucucauuauuuauuuuau	chr1:54509160-54509441(-)$1	281	206	237	25.7098
AAAGUUUAUAACCAGUUAUUUAUAUGAAUCU	chr1:26605104-26605389(+)$1	285	103	134	24.4127
CAACAUUUAACCUCUUAAAUUUGUUAAAUGU	chr4:48566919-48567171(-)$1	252	57	88	24.0093
GUAUGUUGCAGUUACUCAUAUUAAACAUAAC	chr2:38790738-38790972(-)$1	234	56	87	22.2272
AUGUGUGAUUUGUGUUUUUAUUUUAUAGAAU	chr10:59951284-59951610(-)$1	326	209	240	23.2802
UAGUGGUAUUAUGUGAAUUUUUUAUGCCCUA	chr4:17846932-17847255(-)$1	323	132	163	22.6418
UAAGUCAAUAAAGAUCUCACCUCUGGCUUAG	chr3:194995446-194995701(-)$1	255	198	229	23.2745
AUCCCAGGGUCUAAGAUUUUUUCUUUGAGAA	chr10:126630771-126631137(+)$1	366	44	75	23.7900
UCUGAGGGAAAAAUAAAUGAAAAUUUUCUUU	chr2:44115542-44115786(-)$1	244	116	147	21.9334
AUUUUAGAGUCCUUCUUUGUAUUUUUGUAAU	chr4:128960600-128960833(+)$1	233	121	152	23.3247
UCUCUGUUAUGUGCCAUUUUUCUUCUAGCAU	chr16:24227152-24227401(+)$1	249	113	144	23.6183
AAAAGGUUAUUUUGUAACAUUUGUCUAACUU	chr17:74731035-74731256(-)$1	221	109	140	24.3498
UGAUGUAUUUGAUCCUGAUUCUACCCAAGUA	chr3:140681999-140682229(+)$1	230	14	45	23.6986
UUAAUAUUGGAUAUACUUCACCUUCUGAAUU	chr15:80423576-80423861(+)$1	285	162	193	24.6988
UUGUUAUAUCUAAGAUUUUAUUGAUGUUAAA	chr4:41962372-41962643(+)$1	271	138	169	25.7265
UACUUGUCAUUAAUGUAAAUAAAGUGAGUAA	chr15:32929909-32930173(+)$1	264	150	181	22.2396
AUUAGCUUGAGAACUAUUACCCAGCUCUAAG	chr3:182637110-182637359(+)$1	249	189	220	22.8721
uuuuaaguguauuuacaaaguuuuacaauua	chr10:75003172-75003499(-)$1	327	43	74	24.2052
ACAUGUAUAGACUAUUGAAAUACUGUACUUG	chr11:95502056-95502327(-)$1	271	107	138	25.3996
UGGCUGUAGAAUCAUCCAUCCGUCUACAGCU	chr6:350587-350948(+)$1	361	19	50	26.2589
UCUGAAUGUGUAACAAUAUUUAAUGUAUUUA	chr17:30697133-30697352(+)$1	219	99	130	26.4135
UGUAUGAUGAUCUUGCUUUAAUUCACUUCAG	chr11:32996918-32997236(+)$1	318	274	305	24.3682
UUUGUUUUAAGUCUUCAAAUAUCUUGAGAAA	chr6:136581996-136582219(-)$1	223	100	131	24.4714
auacuucauuccuuuuuuaugccugaaugau	chr18:70827368-70827643(-)$1	275	63	94	24.1449
AACAUUGAUUUUCUUUUGUACUAAAUCAUAU	chr2:44457059-44457392(+)$1	333	132	163	24.4926
AUAAUAUGCAUAUUCAUCUUGUAAUGCAUAC	chr13:33091099-33091374(-)$1	275	27	58	21.4658
UAUGUUUAUAAAAUAAGAAGAAAUAGACUUG	chr21:34821253-34821486(-)$1	233	134	165	23.1829
GAGAAACUGAAAAACAAGAAUAUUUAGCUCU	chr4:83382022-83382323(+)$1	301	269	300	24.2141
UUGUCACUUCAUAGAAUGUAUAUUUGAUUUG	chr12:96671952-96672240(-)$1	288	108	139	23.1467
UAAAUGUUUUUCCCUGCACAACAAAAACAGU	chr1:93826200-93826433(+)$1	233	26	57	26.4058
uagcauuuugguauauauccuuccagaauuu	chr16:89835980-89836236(-)$1	256	111	142	25.9358
CUGUUGCUUUGUGGGUUUGUUUUGUAUGUGC	chr20:5527209-5527510(-)$1	301	136	167	22.8003
AACUCUUAAACUGUAUUUCCCUUUUUUGUGA	chr4:103746450-103746709(-)$1	259	163	194	22.1250
ACUGAUAAAGGUGUUUAUAUUUUUGUUUGUU	chr2:152331907-152332135(+)$1	228	60	91	26.3867
UUUGAAUAUAUCUUAACCAUUUUAUGUUCCA	chr17:49039719-49040008(-)$1	289	210	241	22.7000
UGGUGGCUGUUUUUUUCUAUUUCUGACUCUG	chr21:34821224-34821453(-)$1	229	184	215	24.1759
UUGGGCUGAUUUUGUAAAAUGUAAUGAGUAA	chr4:142155397-142155660(+)$1	263	116	147	25.2151

#DB
((((.((((((...........))))))..)	chr2:202005157-202005455(+)$1	1	60	91	24.6134
(((...((((............))))...))	chr4:25279767-25280046(+)$1	1	136	167	24.3125
(((((((((((...........)))))))))	chr17:30697019-30697271(+)$1	1	213	244	26.4135
(.(((((((((............))))))))	chr4:17818960-17819267(+)$1	1	192	223	25.6796
(((((((((................))))))	chr17:74730943-74731181(-)$1	1	34	65	24.3498
((...(((..............)))))).))	chr15:59296191-59296488(+)$1	1	100	131	23.1144
(((.(((((.............))))))))(	chr1:14095325-14095743(+)$1	1	58	89	23.7050
(((.((((((............)))))).))	chr11:95502175-95502454(-)$1	1	234	265	25.3996
....(((((((...........)))).))).	chr10:64927421-64927685(-)$1	1	222	253	24.6766
..((((((..............))))))..)	chr6:150046099-150046359(-)$1	1	98	129	21.2659
(((((((((((...........))).))).)	chr1:227085859-227086161(+)$1	1	243	274	24.3574
(...((((((............))))))...	chr2:33036184-33036498(+)$1	1	48	79	24.6460
(.((.((((((...........)))))).))	chr6:125412862-125413203(+)$1	1	181	212	24.9026
((.....(((............)))))))))	chr7:139789584-139789910(-)$1	1	98	129	22.9096
((((((((((................)))))	chr19:21560375-21560650(+)$1	1	224	255	24.3994
(((.(((((((...........)))))))..	chr21:17252131-17252420(+)$1	1	83	114	25.3530
((((.(((((............))))).)))	chr19:12299680-12300134(+)$1	1	10	41	23.4250
(.(((((((((.............)))))))	chr21:30399978-30400315(+)$1	1	218	249	24.9601
....(((((((............))))))).	chr15:35148769-35149028(-)$1	1	202	233	21.4658
((.((((((.(............))))))).	chr12:67704645-67704892(+)$1	1	78	109	22.5438
(...(((((((.............))))...	chr1:220383925-220384252(-)$1	1	161	192	22.5864
....(((((((............))))))).	chr17:74731957-74732208(-)$1	1	34	65	21.4658
((...((((((...........)))))).))	chr12:50397986-50398238(-)$1	1	80	111	25.3207
(....((((((...........))))))...	chr10:24885459-24885736(-)$1	1	163	194	26.5147
....((((((.............))))))..	chr2:70169809-70170158(+)$1	1	94	125	23.1254
.((..((((((...........))))))...	chr1:186283172-186283458(-)$1	1	33	64	25.5412
(((((((.(((............))).))))	chr1:54509160-54509441(-)$1	1	206	237	25.7098
((((((((((............)))))).))	chr1:26605104-26605389(+)$1	1	103	134	24.4127
..(((((((((...........)))))))))	chr4:48566919-48567171(-)$1	1	57	88	24.0093
(((((((................))))).))	chr2:38790738-38790972(-)$1	1	56	87	22.2272
....(((((((................))))	chr10:59951284-59951610(-)$1	1	209	240	23.2802
(((.(((((..............))))))))	chr4:17846932-17847255(-)$1	1	132	163	22.6418
(((((((................))))))))	chr3:194995446-194995701(-)$1	1	198	229	23.2745
(((.(((((.............))))).).)	chr10:126630771-126631137(+)$1	1	44	75	23.7900
(..((((((((............))))))))	chr2:44115542-44115786(-)$1	1	116	147	21.9334
(((.(((((.............))))).)))	chr4:128960600-128960833(+)$1	1	121	152	23.3247
....(((((................))))))	chr16:24227152-24227401(+)$1	1	113	144	23.6183
(((((((((................))))))	chr17:74731035-74731256(-)$1	1	109	140	24.3498
..(((((((((..............))))))	chr3:140681999-140682229(+)$1	1	14	45	23.6986
..(((.(((((............))))))))	chr15:80423576-80423861(+)$1	1	162	193	24.6988
((...(((((............)))))...)	chr4:41962372-41962643(+)$1	1	138	169	25.7265
((((..(((((...........)))))....	chr15:32929909-32930173(+)$1	1	150	181	22.2396
(((.(((((((.............))).)))	chr3:182637110-182637359(+)$1	1	189	220	22.8721
...(((.((((............)))).)))	chr10:75003172-75003499(-)$1	1	43	74	24.2052
(((.((((((............)))))).))	chr11:95502056-95502327(-)$1	1	107	138	25.3996
((((((((((............)))))))))	chr6:350587-350948(+)$1	1	19	50	26.2589
(((((((((((...........)))))))))	chr17:30697133-30697352(+)$1	1	99	130	26.4135
((..((((((............)))..))).	chr11:32996918-32997236(+)$1	1	274	305	24.3682
....(((((((...........)))))))..	chr6:136581996-136582219(-)$1	1	100	131	24.4714
(....((((((.............)))))).	chr18:70827368-70827643(-)$1	1	63	94	24.1449
((((.((((((...........))))))...	chr2:44457059-44457392(+)$1	1	132	163	24.4926
....(((((((............))))))).	chr13:33091099-33091374(-)$1	1	27	58	21.4658
(((((((((.............))))))..)	chr21:34821253-34821486(-)$1	1	134	165	23.1829
(((...(((((...........)))))))))	chr4:83382022-83382323(+)$1	1	269	300	24.2141
((((((..(((.............)))..))	chr12:96671952-96672240(-)$1	1	108	139	23.1467
(...(((((((...........)))))))))	chr1:93826200-93826433(+)$1	1	26	57	26.4058
(((.(((((((...........))))))).)	chr16:89835980-89836236(-)$1	1	111	142	25.9358
(.(((((................)))...))	chr20:5527209-5527510(-)$1	1	136	167	22.8003
(..((.((((..............)))).))	chr4:103746450-103746709(-)$1	1	163	194	22.1250
(((((((((.(............).))))))	chr2:152331907-152332135(+)$1	1	60	91	26.3867
...(((((((............)))))))((	chr17:49039719-49040008(-)$1	1	210	241	22.7000
(.(((((.(((.............)))...)	chr21:34821224-34821453(-)$1	1	184	215	24.1759
((..(((.(((...........))).)))..	chr4:142155397-142155660(+)$1	1	116	147	25.2151

#PSSM
c : 0.17	f : 0.14	e : 0.12	= : 0.07	: : 0.07	i : 0.06	# : 0.06	g : 0.04	d : 0.04	b : 0.03	h : 0.03	! : 0.03	( : 0.01	F : 0.01	% : 0.01	" : 0.01	) : 0.01	
e : 0.11	f : 0.09	c : 0.09	# : 0.09	= : 0.07	[ : 0.07	: : 0.07	i : 0.06	! : 0.06	" : 0.04	d : 0.04	g : 0.03	b : 0.03	( : 0.01	F : 0.01	% : 0.01	h : 0.01	) : 0.01	
i : 0.12	f : 0.09	" : 0.09	# : 0.09	e : 0.09	= : 0.07	c : 0.07	: : 0.07	! : 0.06	b : 0.04	g : 0.03	d : 0.03	$ : 0.01	% : 0.01	a : 0.01	h : 0.01	) : 0.01	
[ : 0.14	" : 0.12	i : 0.12	f : 0.09	= : 0.07	# : 0.07	e : 0.04	b : 0.04	: : 0.04	! : 0.04	g : 0.03	h : 0.03	c : 0.03	$ : 0.01	d : 0.01	% : 0.01	) : 0.01	
g : 0.15	e : 0.12	f : 0.12	i : 0.11	c : 0.11	" : 0.07	= : 0.07	[ : 0.06	# : 0.03	! : 0.03	b : 0.03	$ : 0.01	h : 0.01	d : 0.01	
f : 0.23	g : 0.15	e : 0.14	c : 0.12	i : 0.11	= : 0.07	" : 0.03	[ : 0.03	$ : 0.01	h : 0.01	! : 0.01	d : 0.01	b : 0.01	
f : 0.23	e : 0.19	g : 0.15	i : 0.11	c : 0.11	= : 0.07	d : 0.04	$ : 0.01	h : 0.01	[ : 0.01	! : 0.01	
f : 0.23	e : 0.15	g : 0.14	d : 0.09	i : 0.09	= : 0.07	c : 0.06	[ : 0.04	y : 0.04	h : 0.01	! : 0.01	
f : 0.22	e : 0.15	g : 0.14	c : 0.12	i : 0.09	d : 0.07	= : 0.07	y : 0.04	w : 0.03	h : 0.01	
f : 0.19	g : 0.14	c : 0.12	y : 0.09	d : 0.07	e : 0.07	= : 0.06	i : 0.06	v : 0.06	w : 0.04	[ : 0.03	h : 0.01	
u : 0.17	g : 0.12	f : 0.11	y : 0.11	c : 0.09	v : 0.07	i : 0.06	w : 0.06	d : 0.04	e : 0.04	= : 0.03	a : 0.03	h : 0.01	
u : 0.33	t : 0.28	v : 0.17	y : 0.12	w : 0.07	
u : 0.33	t : 0.28	v : 0.17	y : 0.12	w : 0.07	
u : 0.33	t : 0.28	v : 0.17	y : 0.12	w : 0.07	
u : 0.33	t : 0.28	v : 0.17	y : 0.12	w : 0.07	
u : 0.33	t : 0.28	v : 0.17	y : 0.12	w : 0.07	
u : 0.33	t : 0.28	v : 0.17	y : 0.12	w : 0.07	
u : 0.33	t : 0.28	v : 0.17	y : 0.12	w : 0.07	
u : 0.33	t : 0.28	v : 0.17	y : 0.12	w : 0.07	
u : 0.33	t : 0.28	v : 0.17	y : 0.12	w : 0.07	
u : 0.33	t : 0.28	v : 0.17	y : 0.12	w : 0.07	
u : 0.33	t : 0.28	v : 0.17	y : 0.12	w : 0.07	
f : 0.19	u : 0.15	y : 0.12	e : 0.11	v : 0.11	c : 0.07	g : 0.07	= : 0.04	w : 0.04	d : 0.03	i : 0.01	
f : 0.20	e : 0.15	g : 0.14	c : 0.11	v : 0.09	y : 0.07	d : 0.04	= : 0.04	i : 0.03	a : 0.03	w : 0.03	h : 0.01	
f : 0.23	c : 0.15	e : 0.15	g : 0.14	d : 0.07	y : 0.07	= : 0.04	i : 0.04	h : 0.01	w : 0.01	] : 0.01	
f : 0.23	e : 0.17	g : 0.14	d : 0.09	i : 0.09	c : 0.09	= : 0.06	] : 0.03	y : 0.03	h : 0.01	2 : 0.01	
f : 0.23	e : 0.17	g : 0.14	i : 0.09	c : 0.09	= : 0.07	d : 0.06	3 : 0.03	] : 0.03	y : 0.01	h : 0.01	2 : 0.01	
f : 0.23	g : 0.15	i : 0.11	c : 0.09	= : 0.07	] : 0.07	e : 0.07	3 : 0.06	d : 0.04	h : 0.01	6 : 0.01	2 : 0.01	
g : 0.15	] : 0.12	i : 0.11	c : 0.11	3 : 0.07	= : 0.07	2 : 0.06	e : 0.06	d : 0.04	f : 0.04	8 : 0.01	0 : 0.01	4 : 0.01	a : 0.01	h : 0.01	6 : 0.01	> : 0.01	
c : 0.12	i : 0.11	g : 0.09	b : 0.09	2 : 0.07	= : 0.07	e : 0.07	f : 0.06	] : 0.04	d : 0.04	3 : 0.04	4 : 0.04	8 : 0.01	0 : 0.01	h : 0.01	6 : 0.01	> : 0.01	
b : 0.12	i : 0.11	c : 0.11	e : 0.11	= : 0.07	d : 0.07	: : 0.06	f : 0.04	2 : 0.04	4 : 0.04	g : 0.03	3 : 0.03	8 : 0.01	0 : 0.01	F : 0.01	h : 0.01	6 : 0.01	5 : 0.01	> : 0.01	

#score	1516.3658667274854
#seq	63
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_UTR_m1_run2.txt

#BEAR
ddd[dddd"""ddddmmmmdddd]ddddddd	chr11:62609093-62609310(-)$1	217	141	172	22.3825
ddd[dddd"""ddddmmmmdddd]ddddddd	chr11:62609082-62609293(-)$1	211	124	155	22.3825
ggggggg!!ddddoooooodddd]ggggggg	chr3:42662766-42663028(+)$1	262	119	150	11.4327
ddd[dddd"""ddddmmmmdddd]ddddddd	chr11:62609011-62609212(-)$1	201	43	74	22.3825
ddd[dddd"""ddddmmmmdddd]ddddddd	chr11:62609021-62609229(-)$1	208	60	91	22.3825
eea[cccdddd!!ccclllccc22dddd333	chr12:69236319-69236526(-)$1	207	60	91	13.5987
eea[cccdddd!!ccclllccc22dddd333	chr12:69236326-69236558(-)$1	232	92	123	13.5987
ddd[dddd"""ddddmmmmdddd]ddddddd	chr11:62609114-62609315(-)$1	201	146	177	22.3825
ddd"""ccc[eeeeemmmmeeeee]ccc22d	chr5:179047917-179048173(-)$1	256	194	225	12.9232
ddd[dddd"""ddddmmmmdddd4444dddd	chr3:15091300-15091604(-)$1	304	60	91	20.6823
[a[a[dddd!!ddddmmmmdddd]dddd]aa	chr8:144668923-144669265(-)$1	342	112	143	18.8376
ddd[dddd"""ddddmmmmdddd]ddddddd	chr11:62609115-62609320(-)$1	205	151	182	22.3825
bb####dddd[ddddmmmmdddd22dddd55	chr5:179048271-179048511(-)$1	240	75	106	16.0798

#otherMatches

#Seq PSSM
gagauggaauaggagcuugcuccguccacuc	chr11:62609093-62609310(-)$1	217	141	172	22.3825
gagauggaauaggagcuugcuccguccacuc	chr11:62609082-62609293(-)$1	211	124	155	22.3825
UUGGAGACUGACAAAUUUGUGUUUUCUUCAA	chr3:42662766-42663028(+)$1	262	119	150	11.4327
gagauggaauaggagcuugcuccguccacuc	chr11:62609011-62609212(-)$1	201	43	74	22.3825
gagauggaauaggagcuugcuccguccacuc	chr11:62609021-62609229(-)$1	208	60	91	22.3825
AGCCAUAAAUUUUUGAAUGUCAUUAAUUACA	chr12:69236319-69236526(-)$1	207	60	91	13.5987
AGCCAUAAAUUUUUGAAUGUCAUUAAUUACA	chr12:69236326-69236558(-)$1	232	92	123	13.5987
gagauggaauaggagcuugcuccguccacuc	chr11:62609114-62609315(-)$1	201	146	177	22.3825
GUCCUGACACGGCCAAUGAUGGCUUUGUACG	chr5:179047917-179048173(-)$1	256	194	225	12.9232
GAAAAUGUGAGGAUUUUAUAAUUGAUAACAU	chr3:15091300-15091604(-)$1	304	60	91	20.6823
GGUGUCGCUUUGUGGAGAACCGCUGGUGUCU	chr8:144668923-144669265(-)$1	342	112	143	18.8376
gagauggaauaggagcuugcuccguccacuc	chr11:62609115-62609320(-)$1	205	151	182	22.3825
GGUUUUAAAUUCUGUAUUAACGGUUGUUUUC	chr5:179048271-179048511(-)$1	240	75	106	16.0798

#DB
(((.((((...((((....)))).)))))))	chr11:62609093-62609310(-)$1	1	141	172	22.3825
(((.((((...((((....)))).)))))))	chr11:62609082-62609293(-)$1	1	124	155	22.3825
(((((((..((((......)))).)))))))	chr3:42662766-42663028(+)$1	1	119	150	11.4327
(((.((((...((((....)))).)))))))	chr11:62609011-62609212(-)$1	1	43	74	22.3825
(((.((((...((((....)))).)))))))	chr11:62609021-62609229(-)$1	1	60	91	22.3825
(((.(((((((..(((...)))..))))...	chr12:69236319-69236526(-)$1	1	60	91	13.5987
(((.(((((((..(((...)))..))))...	chr12:69236326-69236558(-)$1	1	92	123	13.5987
(((.((((...((((....)))).)))))))	chr11:62609114-62609315(-)$1	1	146	177	22.3825
(((...(((.(((((....))))).)))..)	chr5:179047917-179048173(-)$1	1	194	225	12.9232
(((.((((...((((....))))....))))	chr3:15091300-15091604(-)$1	1	60	91	20.6823
.(.(.((((..((((....)))).)))).))	chr8:144668923-144669265(-)$1	1	112	143	18.8376
(((.((((...((((....)))).)))))))	chr11:62609115-62609320(-)$1	1	151	182	22.3825
((....((((.((((....))))..))))..	chr5:179048271-179048511(-)$1	1	75	106	16.0798

#PSSM
d : 0.61	e : 0.15	g : 0.07	[ : 0.07	b : 0.07	
d : 0.61	e : 0.15	g : 0.07	a : 0.07	b : 0.07	
d : 0.61	a : 0.15	g : 0.07	[ : 0.07	# : 0.07	
[ : 0.69	g : 0.07	" : 0.07	a : 0.07	# : 0.07	
d : 0.53	c : 0.15	g : 0.07	" : 0.07	[ : 0.07	# : 0.07	
d : 0.61	c : 0.15	g : 0.07	" : 0.07	# : 0.07	
d : 0.69	c : 0.23	g : 0.07	
d : 0.84	! : 0.07	c : 0.07	
" : 0.53	d : 0.30	! : 0.07	c : 0.07	
" : 0.53	d : 0.30	[ : 0.07	! : 0.07	
" : 0.53	d : 0.23	e : 0.07	! : 0.07	[ : 0.07	
d : 0.76	! : 0.15	e : 0.07	
d : 0.76	! : 0.15	e : 0.07	
d : 0.69	c : 0.15	o : 0.07	e : 0.07	
d : 0.69	c : 0.15	o : 0.07	e : 0.07	
m : 0.76	c : 0.15	o : 0.07	
m : 0.76	l : 0.15	o : 0.07	
m : 0.76	l : 0.15	o : 0.07	
m : 0.76	l : 0.15	o : 0.07	
d : 0.76	c : 0.15	e : 0.07	
d : 0.76	c : 0.15	e : 0.07	
d : 0.76	c : 0.15	e : 0.07	
d : 0.76	2 : 0.15	e : 0.07	
] : 0.61	2 : 0.23	e : 0.07	4 : 0.07	
d : 0.69	g : 0.07	] : 0.07	4 : 0.07	2 : 0.07	
d : 0.76	g : 0.07	c : 0.07	4 : 0.07	
d : 0.76	g : 0.07	c : 0.07	4 : 0.07	
d : 0.84	g : 0.07	c : 0.07	
d : 0.61	3 : 0.15	g : 0.07	2 : 0.07	] : 0.07	
d : 0.53	3 : 0.15	g : 0.07	2 : 0.07	a : 0.07	5 : 0.07	
d : 0.61	3 : 0.15	g : 0.07	a : 0.07	5 : 0.07	

#score	241.44890913404615
#seq	13
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_CDS_m3_run2.txt

#BEAR
b]dddd22dddd]=============22dddd	chr1:22155814-22156070(-)$1	256	120	152	11.3943
4444bb22a4444ffffff22ffffff]dddd	chrM:14216-14424(-)$1	208	104	136	20.4900
4444bb22a4444ffffff22ffffff]dddd	chrM:14204-14416(-)$1	212	96	128	20.4900
mmmeeeee4444a]ccc]ggggggg]ccc]bb	chr1:975928-976205(+)$1	277	86	118	8.8057
4444bb22a4444ffffff22ffffff]dddd	chrM:14224-14449(-)$1	225	129	161	20.4900
4444ggggggg]bbeeeee22bb]a333dddd	chr12:112036730-112037016(-)$1	286	138	170	13.0193
4444bb22a4444ffffff22ffffff]dddd	chrM:14277-14487(-)$1	210	167	199	20.4900
ff]a]dddd4444ffffff]bb]bbeeeee]c	chr19:2270539-2270794(+)$1	255	123	155	10.3984
pggggggg22iiiiiiiii333a]bb22dddd	chrM:14301-14521(-)$1	220	108	140	11.9149
^^^^^^^^^^^^^ffffff22eeeee]a]bb2	chr1:90493044-90493313(+)$1	269	164	196	12.1537
qqqqbb333===========]eeeee22dddd	chr19:1418628-1418878(+)$1	250	184	216	12.4196
pggggggg22iiiiiiiii333a]bb22dddd	chrM:14287-14501(-)$1	214	88	120	11.9149
llffffff]aa22ffffff]bb]ccccccddd	chr19:2270413-2270668(+)$1	255	115	147	11.2403
4444bb22a4444ffffff22ffffff]dddd	chrM:14249-14477(-)$1	228	157	189	20.4900
lllbb22dddd333ffffff]ccc]bb]eeee	chr19:2425978-2426265(-)$1	287	89	121	11.7420

#otherMatches

#Seq PSSM
GCGGGCCUGUGGAGGACUUCGUGUCCCUGGCG	chr1:22155814-22156070(-)$1	256	120	152	11.3943
AAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGG	chrM:14216-14424(-)$1	208	104	136	20.4900
AAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGG	chrM:14204-14416(-)$1	212	96	128	20.4900
ACCCUGAGCUUUCUCCCCUACCCGCCCCAGCG	chr1:975928-976205(+)$1	277	86	118	8.8057
AAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGG	chrM:14224-14449(-)$1	225	129	161	20.4900
UCCCCGCCCGGCGUGCGAGCCGGUGUAUGGGC	chr12:112036730-112037016(-)$1	286	138	170	13.0193
AAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGG	chrM:14277-14487(-)$1	210	167	199	20.4900
UGCGUCCCCCGAGGUGGGCGUCGCUCAGCCCC	chr19:2270539-2270794(+)$1	255	123	155	10.3984
GUCUUGGUGAGUGUUUUAGUGGGGUUAGCGAU	chrM:14301-14521(-)$1	220	108	140	11.9149
AGCAAAGGAAGAACCUGCUGACUUCCCUGUUG	chr1:90493044-90493313(+)$1	269	164	196	12.1537
CGCUCGUUAAGAUUGAGGGCGACGCAGGUCUU	chr19:1418628-1418878(+)$1	250	184	216	12.4196
GUCUUGGUGAGUGUUUUAGUGGGGUUAGCGAU	chrM:14287-14501(-)$1	214	88	120	11.9149
CGCACUCCGACAGCCCGGCAGCGCCCUGGGAA	chr19:2270413-2270668(+)$1	255	115	147	11.2403
AAUAGUGUAGGAAGCUGAAUAAUUUAUGAAGG	chrM:14249-14477(-)$1	228	157	189	20.4900
UUGGGUAGGGUACGGUGGGGUGGGGUGUUGGG	chr19:2425978-2426265(-)$1	287	89	121	11.7420

#DB
).))))..)))).)))))))))))))..))))	chr1:22155814-22156070(-)$1	1	120	152	11.3943
....))..)....))))))..)))))).))))	chrM:14216-14424(-)$1	1	104	136	20.4900
....))..)....))))))..)))))).))))	chrM:14204-14416(-)$1	1	96	128	20.4900
...)))))....).))).))))))).))).))	chr1:975928-976205(+)$1	1	86	118	8.8057
....))..)....))))))..)))))).))))	chrM:14224-14449(-)$1	1	129	161	20.4900
....))))))).)))))))..)).)...))))	chr12:112036730-112037016(-)$1	1	138	170	13.0193
....))..)....))))))..)))))).))))	chrM:14277-14487(-)$1	1	167	199	20.4900
)).).))))....)))))).)).))))))).)	chr19:2270539-2270794(+)$1	1	123	155	10.3984
.)))))))..)))))))))...).))..))))	chrM:14301-14521(-)$1	1	108	140	11.9149
.............))))))..))))).).)).	chr1:90493044-90493313(+)$1	1	164	196	12.1537
....))...))))))))))).)))))..))))	chr19:1418628-1418878(+)$1	1	184	216	12.4196
.)))))))..)))))))))...).))..))))	chrM:14287-14501(-)$1	1	88	120	11.9149
..)))))).))..)))))).)).)))))))))	chr19:2270413-2270668(+)$1	1	115	147	11.2403
....))..)....))))))..)))))).))))	chrM:14249-14477(-)$1	1	157	189	20.4900
...))..))))...)))))).))).)).))))	chr19:2425978-2426265(-)$1	1	89	121	11.7420

#PSSM
4 : 0.39	p : 0.13	l : 0.13	b : 0.06	m : 0.06	f : 0.06	^ : 0.06	q : 0.06	
4 : 0.39	g : 0.13	l : 0.13	] : 0.06	m : 0.06	f : 0.06	^ : 0.06	q : 0.06	
4 : 0.39	g : 0.13	d : 0.06	m : 0.06	] : 0.06	^ : 0.06	q : 0.06	f : 0.06	l : 0.06	
4 : 0.39	g : 0.13	d : 0.06	e : 0.06	a : 0.06	^ : 0.06	q : 0.06	f : 0.06	b : 0.06	
b : 0.46	g : 0.20	d : 0.06	e : 0.06	] : 0.06	^ : 0.06	f : 0.06	
b : 0.39	g : 0.20	d : 0.13	e : 0.06	^ : 0.06	f : 0.06	2 : 0.06	
2 : 0.46	g : 0.20	e : 0.06	d : 0.06	^ : 0.06	3 : 0.06	f : 0.06	
2 : 0.39	g : 0.20	d : 0.13	e : 0.06	^ : 0.06	3 : 0.06	f : 0.06	
a : 0.33	d : 0.20	2 : 0.13	4 : 0.06	g : 0.06	^ : 0.06	3 : 0.06	] : 0.06	
4 : 0.46	d : 0.13	2 : 0.13	g : 0.06	^ : 0.06	= : 0.06	a : 0.06	
4 : 0.46	d : 0.13	i : 0.13	g : 0.06	^ : 0.06	= : 0.06	a : 0.06	
4 : 0.46	i : 0.13	d : 0.06	] : 0.06	^ : 0.06	= : 0.06	2 : 0.06	3 : 0.06	
4 : 0.39	i : 0.13	] : 0.06	a : 0.06	b : 0.06	^ : 0.06	= : 0.06	2 : 0.06	3 : 0.06	
f : 0.53	= : 0.13	i : 0.13	] : 0.06	b : 0.06	3 : 0.06	
f : 0.60	= : 0.13	i : 0.13	c : 0.06	e : 0.06	
f : 0.60	= : 0.13	i : 0.13	c : 0.06	e : 0.06	
f : 0.60	= : 0.13	i : 0.13	c : 0.06	e : 0.06	
f : 0.60	= : 0.13	i : 0.13	] : 0.06	e : 0.06	
f : 0.60	= : 0.13	i : 0.13	g : 0.06	e : 0.06	
2 : 0.46	= : 0.13	] : 0.13	3 : 0.13	g : 0.06	f : 0.06	
2 : 0.46	b : 0.13	3 : 0.13	] : 0.13	= : 0.06	g : 0.06	
f : 0.33	b : 0.20	3 : 0.13	e : 0.13	= : 0.06	g : 0.06	c : 0.06	
f : 0.33	] : 0.13	a : 0.13	e : 0.13	= : 0.06	g : 0.06	b : 0.06	c : 0.06	
f : 0.33	] : 0.20	e : 0.13	c : 0.13	= : 0.06	g : 0.06	b : 0.06	
f : 0.33	b : 0.20	e : 0.13	= : 0.06	g : 0.06	a : 0.06	c : 0.06	] : 0.06	
f : 0.33	e : 0.20	b : 0.20	= : 0.06	] : 0.06	3 : 0.06	c : 0.06	
f : 0.33	2 : 0.26	c : 0.13	3 : 0.06	e : 0.06	] : 0.06	b : 0.06	
] : 0.39	2 : 0.26	c : 0.13	3 : 0.06	e : 0.06	a : 0.06	
d : 0.66	c : 0.13	e : 0.13	] : 0.06	
d : 0.73	e : 0.13	] : 0.06	b : 0.06	
d : 0.73	b : 0.13	] : 0.06	e : 0.06	
d : 0.73	b : 0.06	c : 0.06	2 : 0.06	e : 0.06	

#score	217.45371545770658
#seq	15
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_CDS_m2_run1.txt

#BEAR
========"""ccclllccc333=========	chr20:61457489-61457707(+)$1	218	24	56	18.2413
"""cccccc[ddddmmmmdddd]ccc333ccc	chr10:75532205-75532467(+)$1	262	107	139	13.3145
==========[cccmmmmccc]==========	chrM:14379-14582(-)$1	203	82	114	19.7068
==========[cccmmmmccc]==========	chrM:14366-14575(-)$1	209	75	107	19.7068
ffffff[bb!!cccmmmmccc4444bb22fff	chrM:14382-14585(-)$1	203	112	144	16.4785
eeeee!!ccc[cccmmmmccc]ccc22eeeee	chr2:220042998-220043301(+)$1	303	110	142	14.4245
dd[ccc[ccc!!ccclllccc22ccc]ccc]d	chr12:53421493-53421707(+)$1	214	35	67	13.0207
==========[cccmmmmccc]==========	chrM:14389-14592(-)$1	203	92	124	19.7068
ffffff[bb!!cccmmmmccc4444bb22fff	chrM:14278-14480(-)$1	202	7	39	16.4785
a[ccc[a[a[ddddmmmmdddd]a22a]ccc]	chr6:43197006-43197303(-)$1	297	125	157	13.1441
=====!!gggggggmmmmggggggg4444===	chr4:129208622-129208894(-)$1	272	78	110	15.6368
cccc[bb[a!!cccmmmmccc22a]bb]ccc]	chr1:19209778-19210023(-)$1	245	119	151	16.0001
iiiiidddd!!cccmmmmccc22dddd]iiii	chr17:79225910-79226172(-)$1	262	21	53	15.7429
eee[bb[a[a[cccmmmmccca]a]bb]eeee	chr19:40030341-40030636(-)$1	295	180	212	15.2987
iiiiiiiii!!cccmmmmccc]iiiiiiiiie	chr3:53265458-53265667(-)$1	209	25	57	18.1017
==========[cccmmmmccc]==========	chrM:14385-14587(-)$1	202	87	119	19.7068
==========[cccmmmmccc]==========	chrM:14375-14579(-)$1	204	79	111	19.7068
ffffff[bb!!cccmmmmccc4444bb22fff	chrM:14284-14486(-)$1	202	13	45	16.4785
fff[ddddbb[cccmmmmccc]bb333dddd3	chr8:91657853-91658141(-)$1	288	112	144	14.0787
ggggggg####cccmmmmcccggggggg]ddd	chr18:55997868-55998097(+)$1	229	93	125	15.8150
========"""cccmmmmccc333========	chr17:74077673-74077969(-)$1	296	22	54	20.2880
ffffff"""cccooooooccc333ffffffii	chr16:74485899-74486198(-)$1	299	2	34	12.8876
gggg"""ggggggglllggggggg]ggggggg	chr17:38153990-38154272(+)$1	282	113	145	12.1682
ggggggbb!!ddddmmmmdddd]bb4444ggg	chr2:27305850-27306178(+)$1	328	46	78	13.4255
========"""ccclllccc333=========	chr19:49965807-49966109(+)$1	302	259	291	18.2413
=======####ccclllccc4444========	chr3:53265440-53265658(-)$1	218	8	40	17.8820
ffffff[bb!!cccmmmmccc4444bb22fff	chrM:14392-14601(-)$1	209	128	160	16.4785
==============lll==============3	chr3:47823020-47823280(-)$1	260	141	173	15.9435
ffffff!!a[ddddmmmmdddd]a4444ffff	chr12:54676761-54676996(+)$1	235	50	82	13.4784
[bb[ccc####cccmmmmcccccc333bba]d	chr20:4679848-4680131(+)$1	283	104	136	15.1212
ggggggg"""cccnnnnnccc333ggggggg3	chr3:53265398-53265640(-)$1	242	46	78	13.9959
d!!a[bb!!a[cccmmmmccc]a22bba22dd	chr4:79369184-79369471(+)$1	287	92	124	15.1207
dd####dddd[cccmmmmccc]dddd333ddd	chr2:113418618-113418829(+)$1	211	69	101	14.1655
eeeee"""ccccccmmmmccc4444ccceeee	chr2:70488243-70488516(+)$1	273	3	35	15.2681
a[ccc####eeeeemmmmeeeee4444ccc]a	chr13:114144714-114145076(-)$1	362	47	79	12.4548
==========[cccmmmmccc]==========	chrM:14387-14589(-)$1	202	89	121	19.7068
==========[cccmmmmccc]==========	chrM:14286-14503(-)$1	217	3	35	19.7068
cc:===========lll===========:iii	chr20:61460738-61460952(+)$1	214	125	157	12.8638
d"""dddd[a[cccmmmmccc]a]dddddddd	chr22:37906121-37906344(-)$1	223	136	168	13.7921
=====!!gggggggmmmmggggggg4444===	chr4:129208538-129208822(-)$1	284	6	38	15.6368
ffffff[bb!!cccmmmmccc4444bb22fff	chrM:14282-14484(-)$1	202	11	43	16.4785
============oooooo============cc	chr10:131565032-131565352(+)$1	320	138	170	14.7078
ee"""ddddbbcccmmmmccc4444bb22ddd	chr3:139092096-139092356(-)$1	260	167	199	14.3124
gggggg!!ccc[ccclllccc]ccc4444ggg	chr20:3027234-3027481(+)$1	247	1	33	14.5566
==========[cccmmmmccc]==========	chrM:14303-14506(-)$1	203	6	38	19.7068

#otherMatches

#Seq PSSM
AGGUGCAGCCCCAGCCUCUGCAUCUGUGCCUC	chr20:61457489-61457707(+)$1	218	24	56	18.2413
CUUGCCGGUACUGCUGUGGUGGAGCCCAGGGC	chr10:75532205-75532467(+)$1	262	107	139	13.3145
UAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUA	chrM:14379-14582(-)$1	203	82	114	19.7068
UAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUA	chrM:14366-14575(-)$1	209	75	107	19.7068
GGAUAUACUACAGCGAUGGCUAUUGAGGAGUA	chrM:14382-14585(-)$1	203	112	144	16.4785
cggguggggggccggggaugggccugagccug	chr2:220042998-220043301(+)$1	303	110	142	14.4245
AGAAAAGGGGAUGGUGUUACUUGUCUGUUUCC	chr12:53421493-53421707(+)$1	214	35	67	13.0207
UAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUA	chrM:14389-14592(-)$1	203	92	124	19.7068
GGAUAUACUACAGCGAUGGCUAUUGAGGAGUA	chrM:14278-14480(-)$1	202	7	39	16.4785
UGCCGGGGCGCAGCGAGAGCUGGGAGCGCGGG	chr6:43197006-43197303(-)$1	297	125	157	13.1441
gcguuggcgCUUCUGACGGGGGGCGGGGAAAU	chr4:129208622-129208894(-)$1	272	78	110	15.6368
GCGGAGAUUGACGCUGCAGCGGAACUCAUCGA	chr1:19209778-19210023(-)$1	245	119	151	16.0001
GGGCCAGGAGACAGGGGCCUGCAUCCUCGGCC	chr17:79225910-79226172(-)$1	262	21	53	15.7429
cgcggcgggcagggaaagcccggcggcggcgg	chr19:40030341-40030636(-)$1	295	180	212	15.2987
CUCCUGGAGCAGCCUCCUGGCCCUCUGGGAGC	chr3:53265458-53265667(-)$1	209	25	57	18.1017
UAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUA	chrM:14385-14587(-)$1	202	87	119	19.7068
UAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUA	chrM:14375-14579(-)$1	204	79	111	19.7068
GGAUAUACUACAGCGAUGGCUAUUGAGGAGUA	chrM:14284-14486(-)$1	202	13	45	16.4785
gggugcgggcggggacggcccggcggACCGCC	chr8:91657853-91658141(-)$1	288	112	144	14.0787
UCUGAAAGCCUUGGGAGACCAUUUCAGAGGAA	chr18:55997868-55998097(+)$1	229	93	125	15.8150
CACAGGGAGAUGCUCAGGGGCCAGUCCCUGUG	chr17:74077673-74077969(-)$1	296	22	54	20.2880
CUCAGCCAUGUCUGGACCGGCCCUGCUGAGGC	chr16:74485899-74486198(-)$1	299	2	34	12.8876
UUCUGUGUACUCCUUUAGGGAGUGGGGGACUA	chr17:38153990-38154272(+)$1	282	113	145	12.1682
UGGGGAGCAGGACUCUCAAGUCAGCGAGAUCC	chr2:27305850-27306178(+)$1	328	46	78	13.4255
cagcuccuggguccaagggaggagggagcugg	chr19:49965807-49966109(+)$1	302	259	291	18.2413
GGGCCAGUCUCCUGGAGCAGCCUCCUGGCCCU	chr3:53265440-53265658(-)$1	218	8	40	17.8820
GGAUAUACUACAGCGAUGGCUAUUGAGGAGUA	chrM:14392-14601(-)$1	209	128	160	16.4785
CCCAGCUGGAUUCGGUGCGGGUCUGGCUGGGC	chr3:47823020-47823280(-)$1	260	141	173	15.9435
UUUUCAUUGUCAAAUACUUUUGUCUUAUUGAG	chr12:54676761-54676996(+)$1	235	50	82	13.4784
AGGAUGGAACACUGGGGGCAGCCGAUACCCGG	chr20:4679848-4680131(+)$1	283	104	136	15.1212
CCUCUGUCCUCCCGUGUUGGGUCUGCAGGGGU	chr3:53265398-53265640(-)$1	242	46	78	13.9959
CUUCACCUACCAGGAUAUCCUAGCUGGGCUGG	chr4:79369184-79369471(+)$1	287	92	124	15.1207
CUUCCUGACAAGAAUCCUUUUGUGUCUGUAGU	chr2:113418618-113418829(+)$1	211	69	101	14.1655
CUGAGAACUGAGGGAAGCCCCAAAUUCACUCA	chr2:70488243-70488516(+)$1	273	3	35	15.2681
UGCGCAGAAGGCCGGGGCCGGCCAGAAGCGGG	chr13:114144714-114145076(-)$1	362	47	79	12.4548
UAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUA	chrM:14387-14589(-)$1	202	89	121	19.7068
UAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUA	chrM:14286-14503(-)$1	217	3	35	19.7068
AGCCGCUUUCUCUCUGGGAGGGGAGGCGAGGG	chr20:61460738-61460952(+)$1	214	125	157	12.8638
CAGGGCUUGUGGGCACAGGCUGGGGGGUGGUC	chr22:37906121-37906344(-)$1	223	136	168	13.7921
gcguuggcgCUUCUGACGGGGGGCGGGGAAAU	chr4:129208538-129208822(-)$1	284	6	38	15.6368
GGAUAUACUACAGCGAUGGCUAUUGAGGAGUA	chrM:14282-14484(-)$1	202	11	43	16.4785
GCCAGGCUUGGGAGGGAGCUCAGGUCUGGCAG	chr10:131565032-131565352(+)$1	320	138	170	14.7078
AGAAGUCCAGCAGGCCAACCUAAAAGCAAUGG	chr3:139092096-139092356(-)$1	260	167	199	14.3124
GCCUCGGCCCUUUGACCCUCACAGGAUAGCGA	chr20:3027234-3027481(+)$1	247	1	33	14.5566
UAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUA	chrM:14303-14506(-)$1	203	6	38	19.7068

#DB
((((((((...(((...)))...)))))))))	chr20:61457489-61457707(+)$1	1	24	56	18.2413
...((((((.((((....)))).)))...)))	chr10:75532205-75532467(+)$1	1	107	139	13.3145
((((((((((.(((....))).))))))))))	chrM:14379-14582(-)$1	1	82	114	19.7068
((((((((((.(((....))).))))))))))	chrM:14366-14575(-)$1	1	75	107	19.7068
((((((.((..(((....)))....))..)))	chrM:14382-14585(-)$1	1	112	144	16.4785
(((((..(((.(((....))).)))..)))))	chr2:220042998-220043301(+)$1	1	110	142	14.4245
((.(((.(((..(((...)))..))).))).)	chr12:53421493-53421707(+)$1	1	35	67	13.0207
((((((((((.(((....))).))))))))))	chrM:14389-14592(-)$1	1	92	124	19.7068
((((((.((..(((....)))....))..)))	chrM:14278-14480(-)$1	1	7	39	16.4785
(.(((.(.(.((((....)))).)..).))).	chr6:43197006-43197303(-)$1	1	125	157	13.1441
(((((..(((((((....)))))))....)))	chr4:129208622-129208894(-)$1	1	78	110	15.6368
((((.((.(..(((....)))..).)).))).	chr1:19209778-19210023(-)$1	1	119	151	16.0001
(((((((((..(((....)))..)))).))))	chr17:79225910-79226172(-)$1	1	21	53	15.7429
(((.((.(.(.(((....)))).).)).))))	chr19:40030341-40030636(-)$1	1	180	212	15.2987
(((((((((..(((....))).)))))))))(	chr3:53265458-53265667(-)$1	1	25	57	18.1017
((((((((((.(((....))).))))))))))	chrM:14385-14587(-)$1	1	87	119	19.7068
((((((((((.(((....))).))))))))))	chrM:14375-14579(-)$1	1	79	111	19.7068
((((((.((..(((....)))....))..)))	chrM:14284-14486(-)$1	1	13	45	16.4785
(((.((((((.(((....))).))...)))).	chr8:91657853-91658141(-)$1	1	112	144	14.0787
(((((((....(((....)))))))))).)))	chr18:55997868-55998097(+)$1	1	93	125	15.8150
((((((((...(((....)))...))))))))	chr17:74077673-74077969(-)$1	1	22	54	20.2880
((((((...(((......)))...))))))((	chr16:74485899-74486198(-)$1	1	2	34	12.8876
((((...(((((((...))))))).)))))))	chr17:38153990-38154272(+)$1	1	113	145	12.1682
((((((((..((((....)))).))....)))	chr2:27305850-27306178(+)$1	1	46	78	13.4255
((((((((...(((...)))...)))))))))	chr19:49965807-49966109(+)$1	1	259	291	18.2413
(((((((....(((...)))....))))))))	chr3:53265440-53265658(-)$1	1	8	40	17.8820
((((((.((..(((....)))....))..)))	chrM:14392-14601(-)$1	1	128	160	16.4785
((((((((((((((...)))))))))))))).	chr3:47823020-47823280(-)$1	1	141	173	15.9435
((((((..(.((((....)))).)....))))	chr12:54676761-54676996(+)$1	1	50	82	13.4784
.((.(((....(((....))))))...))).)	chr20:4679848-4680131(+)$1	1	104	136	15.1212
(((((((...(((.....)))...))))))).	chr3:53265398-53265640(-)$1	1	46	78	13.9959
(..(.((..(.(((....))).)..)))..))	chr4:79369184-79369471(+)$1	1	92	124	15.1207
((....((((.(((....))).))))...)))	chr2:113418618-113418829(+)$1	1	69	101	14.1655
(((((...((((((....)))....)))))))	chr2:70488243-70488516(+)$1	1	3	35	15.2681
(.(((....(((((....)))))....))).)	chr13:114144714-114145076(-)$1	1	47	79	12.4548
((((((((((.(((....))).))))))))))	chrM:14387-14589(-)$1	1	89	121	19.7068
((((((((((.(((....))).))))))))))	chrM:14286-14503(-)$1	1	3	35	19.7068
)).(((((((((((...))))))))))).(((	chr20:61460738-61460952(+)$1	1	125	157	12.8638
(...((((.(.(((....))).).))))))))	chr22:37906121-37906344(-)$1	1	136	168	13.7921
(((((..(((((((....)))))))....)))	chr4:129208538-129208822(-)$1	1	6	38	15.6368
((((((.((..(((....)))....))..)))	chrM:14282-14484(-)$1	1	11	43	16.4785
((((((((((((......))))))))))))((	chr10:131565032-131565352(+)$1	1	138	170	14.7078
((...(((((((((....)))....))..)))	chr3:139092096-139092356(-)$1	1	167	199	14.3124
((((((..(((.(((...))).)))....)))	chr20:3027234-3027481(+)$1	1	1	33	14.5566
((((((((((.(((....))).))))))))))	chrM:14303-14506(-)$1	1	6	38	19.7068

#PSSM
= : 0.35	f : 0.17	g : 0.11	e : 0.08	d : 0.08	a : 0.04	c : 0.04	i : 0.04	" : 0.02	[ : 0.02	
= : 0.35	f : 0.17	g : 0.11	e : 0.08	" : 0.04	d : 0.04	[ : 0.04	c : 0.04	i : 0.04	b : 0.02	! : 0.02	
= : 0.35	f : 0.17	g : 0.11	" : 0.06	e : 0.06	c : 0.06	i : 0.04	[ : 0.02	b : 0.02	! : 0.02	# : 0.02	: : 0.02	
= : 0.37	f : 0.15	c : 0.11	g : 0.11	[ : 0.06	e : 0.04	i : 0.04	" : 0.04	a : 0.02	# : 0.02	
= : 0.37	f : 0.15	c : 0.11	g : 0.08	e : 0.04	[ : 0.04	i : 0.04	d : 0.04	" : 0.04	b : 0.02	# : 0.02	
= : 0.33	f : 0.15	d : 0.08	g : 0.08	c : 0.06	! : 0.06	b : 0.06	" : 0.04	# : 0.04	[ : 0.02	i : 0.02	
= : 0.33	[ : 0.15	! : 0.11	d : 0.11	b : 0.06	" : 0.06	c : 0.04	g : 0.04	a : 0.02	i : 0.02	# : 0.02	
= : 0.31	b : 0.13	d : 0.11	# : 0.08	c : 0.06	g : 0.06	" : 0.06	! : 0.06	[ : 0.04	a : 0.02	i : 0.02	
= : 0.24	b : 0.13	" : 0.11	c : 0.11	# : 0.08	a : 0.06	g : 0.06	d : 0.06	[ : 0.04	! : 0.04	i : 0.02	
= : 0.24	! : 0.20	c : 0.11	" : 0.08	[ : 0.06	g : 0.06	a : 0.06	# : 0.06	b : 0.04	d : 0.02	e : 0.02	
[ : 0.31	! : 0.20	d : 0.08	c : 0.08	" : 0.06	g : 0.06	# : 0.06	= : 0.06	e : 0.02	b : 0.02	
c : 0.71	d : 0.08	g : 0.06	= : 0.06	! : 0.02	e : 0.02	[ : 0.02	
c : 0.73	d : 0.08	g : 0.06	o : 0.04	= : 0.04	e : 0.02	
c : 0.71	d : 0.08	g : 0.06	o : 0.04	= : 0.04	n : 0.02	e : 0.02	
m : 0.75	l : 0.13	c : 0.04	o : 0.04	n : 0.02	
m : 0.75	l : 0.17	o : 0.04	n : 0.02	
m : 0.75	l : 0.17	o : 0.04	n : 0.02	
m : 0.75	c : 0.06	l : 0.04	o : 0.04	= : 0.04	g : 0.02	n : 0.02	
c : 0.75	d : 0.08	g : 0.06	= : 0.06	e : 0.02	
c : 0.75	d : 0.08	g : 0.06	= : 0.06	e : 0.02	
c : 0.68	d : 0.08	g : 0.06	= : 0.06	3 : 0.04	4 : 0.02	e : 0.02	
] : 0.33	4 : 0.17	3 : 0.11	d : 0.08	g : 0.08	2 : 0.06	= : 0.06	a : 0.02	c : 0.02	e : 0.02	
= : 0.24	4 : 0.17	3 : 0.11	] : 0.11	g : 0.08	c : 0.06	2 : 0.06	a : 0.04	i : 0.02	b : 0.02	d : 0.02	e : 0.02	
= : 0.28	4 : 0.20	c : 0.11	a : 0.08	g : 0.08	3 : 0.06	d : 0.04	b : 0.04	i : 0.02	2 : 0.02	] : 0.02	
= : 0.33	4 : 0.20	c : 0.08	g : 0.08	] : 0.06	d : 0.06	2 : 0.04	3 : 0.04	i : 0.02	f : 0.02	b : 0.02	
= : 0.33	b : 0.20	4 : 0.13	c : 0.06	d : 0.06	g : 0.06	2 : 0.04	3 : 0.04	i : 0.02	f : 0.02	
= : 0.33	b : 0.20	4 : 0.13	3 : 0.08	g : 0.06	d : 0.04	2 : 0.02	] : 0.02	a : 0.02	i : 0.02	f : 0.02	c : 0.02	
= : 0.33	2 : 0.13	4 : 0.11	] : 0.08	c : 0.06	g : 0.06	3 : 0.04	d : 0.04	e : 0.02	i : 0.02	f : 0.02	b : 0.02	a : 0.02	
= : 0.31	2 : 0.15	c : 0.08	4 : 0.08	e : 0.06	3 : 0.04	i : 0.04	d : 0.04	f : 0.04	g : 0.04	] : 0.02	b : 0.02	: : 0.02	
= : 0.35	f : 0.15	c : 0.11	d : 0.11	g : 0.08	e : 0.06	i : 0.06	a : 0.02	2 : 0.02	
= : 0.33	f : 0.13	d : 0.13	c : 0.08	i : 0.08	g : 0.08	e : 0.06	] : 0.06	
= : 0.31	d : 0.15	f : 0.13	e : 0.08	i : 0.06	3 : 0.06	g : 0.06	c : 0.04	] : 0.04	a : 0.02	

#score	719.1784583963424
#seq	45
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF305BNZ_LARP7_transcript_m1_run2.txt

#BEAR
dd!!cccffffffnnnnnffffff]cccdddd:	chr10:6191536-6191765(+)$1	229	87	120	14.9385
dddd!!gggggggnnnnnggggggg22dddd]a	chr11:16863733-16863941(+)$1	208	36	69	13.8659
hhh####ffffffnnnnnffffff333hhhhhh	chr9:77414743-77414948(+)$1	205	14	47	15.4013
:ffffffffffffnnnnnffffff]ffffffcc	chr6:151640730-151640952(+)$1	222	75	108	13.6061
###ffffff[cccnnnnnccc333ffffff444	chr8:144624407-144624653(+)$1	246	128	161	15.1044
c!!eeeeeeeeeennnnneeeee]eeeeeccc]	chr7:3038687-3038937(+)$1	250	79	112	15.5846
c!!ddddffffffnnnnnffffff]ddddccc2	chr14:90178875-90179100(+)$1	225	17	50	17.4816
b!!ffffff!!bbnnnnnbb22ffffff22bb]	chr6:52860428-52860638(+)$1	210	96	129	14.8356
hhh####ffffffnnnnnffffff333hhhhhh	chr9:77414730-77414936(+)$1	206	27	60	15.4013
dddd!!gggggggnnnnnggggggg22dddd]a	chr11:16863723-16863933(+)$1	210	46	79	13.8659
%%%ccc[ccc[bbnnnnnbb]cccccc4444cc	chr7:111928904-111929109(+)$1	205	53	86	13.7417
"eeeee[ccc[bbnnnnnbb]ccc]eeeee22d	chr17:70660085-70660340(-)$1	255	103	136	14.0320
ii[bb[a[eeeeennnnneeeeea]bb]iiiii	chr2:86363015-86363221(+)$1	206	45	78	14.8370
cc[ffffff!!bbnnnnnbb22ffffff]ccc2	chr9:107859099-107859354(+)$1	255	43	76	15.7413
d[dddd####cccnnnnnccc333dddddddd:	chr8:144624202-144624472(+)$1	270	3	36	13.2717
b!!ffffff!!bbnnnnnbb22ffffff22bb]	chr6:52860423-52860626(+)$1	203	101	134	14.8356
f"""ffffff[bbnnnnnbb333ffffff4444	chr4:7114024-7114227(-)$1	203	73	106	15.7982
c!!ddddccc[bboooooobbccc]ddddccc]	chr18:1323965-1324187(-)$1	222	139	172	12.3967
ffaccc[eeeeeooooooeeeee4444ccc]a]	chr16:71792220-71792440(-)$1	220	161	194	11.2730
c!!eeeeeeeeeennnnneeeee]eeeee4444	chr9:107859011-107859223(+)$1	212	62	95	15.2685
c!!ddddccc[bbnnnnnbb]ccc]ddddccc2	chr4:4922643-4922886(-)$1	243	133	166	16.8890
=======!!ddddnnnnndddd333========	chr19:48259009-48259214(+)$1	205	167	200	15.1535
c[bb"""bb[cccnnnnnccc]bb333bb]ccc	chr19:48259054-48259260(+)$1	206	6	39	13.9368
=======!!ddddnnnnndddd333========	chr19:48259014-48259223(+)$1	209	162	195	15.1535
cc[dddd"""cccnnnnnccc333dddd]ccc5	chr6:52860603-52860808(+)$1	205	35	68	14.8952
cc[dddd"""cccnnnnnccc333dddd]ccc5	chr17:34216549-34216814(+)$1	265	149	182	14.8952
ii[bb[a[eeeeennnnneeeeea]bb]iiiii	chr2:86362938-86363144(+)$1	206	122	155	14.8370
ff$$$$$ffffffnnnnnffffff333ffffff	chr18:586649-586883(-)$1	234	185	218	14.7768
c!!ddddffffffnnnnnffffff]ddddccc2	chr14:90178755-90178982(+)$1	227	137	170	17.4816
cccc"""ccc[bboooooobbccc333ccc333	chr22:37451098-37451304(-)$1	206	111	144	12.4831
b!!ffffff!!bbnnnnnbb22ffffff22bb]	chr12:112704942-112705186(+)$1	244	45	78	14.8356
c!!eeeeeeeeeennnnneeeee]eeeeeccc]	chr11:100710388-100710651(+)$1	263	10	43	15.5846
[eeeeeeeeee[annnnna]eeeee4444eeee	chr9:34270772-34271021(-)$1	249	179	212	13.0250
hhh####ffffffnnnnnffffff333hhhhhh	chr9:77414748-77414952(+)$1	204	9	42	15.4013
=============nnnnn==============:	chr4:168584037-168584298(+)$1	261	202	235	14.6867
"""ccc[ffffffooooooffffff333ccc22	chr17:18965268-18965551(+)$1	283	42	75	12.9433
=======!!ddddnnnnndddd333========	chr19:48259060-48259287(+)$1	227	116	149	15.1535
c!!ddddffffffnnnnnffffff]ddddccc2	chr14:90178856-90179075(+)$1	219	36	69	17.4816
c!!ddddffffffnnnnnffffff]ddddccc2	chr14:90178814-90179019(+)$1	205	78	111	17.4816
c!!ddddccc[bbnnnnnbb]ccc]ddddccc2	chr4:4922640-4922843(-)$1	203	90	123	16.8890
c!!ddddccc[bboooooobbccc]ddddccc2	chr13:99857985-99858199(+)$1	214	14	47	12.4213
ggggg[eeeeebbnnnnnbb]eeeee4444ggg	chr2:158155403-158155668(-)$1	265	9	42	14.5924
cc[ccc"""ddddnnnnndddd333ccc]ccc3	chr4:56406683-56406939(-)$1	256	173	206	15.7720
b!!ffffff!!bbnnnnnbb22ffffff22bb]	chr12:112704857-112705108(+)$1	251	130	163	14.8356
c!!ddddffffffnnnnnffffff]ddddccc2	chr14:90178819-90179056(+)$1	237	73	106	17.4816
::eeeee[eeeeennnnneeeee]eeeeeeeee	chr21:26473391-26473649(+)$1	258	32	65	11.4412
eeeeccc[eeeeennnnneeeee333ccc4444	chr4:53578764-53579011(+)$1	247	189	222	15.3276
hhh####ffffffnnnnnffffff333hhhhhh	chr9:77414710-77414930(+)$1	220	47	80	15.4013
ccc####ffffffnnnnnffffff333ccc22b	chr19:33353685-33353952(-)$1	267	13	46	16.0857
f!!a[ccceeeeennnnneeeee4444ccc]a2	chr1:93491708-93491952(+)$1	244	33	66	16.3742
c!!ddddffffffnnnnnffffff]ddddccc2	chr14:90178782-90178992(+)$1	210	110	143	17.4816
%%%ccc[ccc[bbnnnnnbb]cccccc4444cc	chr7:111928769-111929038(+)$1	269	188	221	13.7417
ggggg####ddddnnnnndddd333ggggggg=	chr12:58371851-58372098(-)$1	247	86	119	14.2656
ii[bb[a[eeeeennnnneeeeea]bb]iiiii	chr2:86362969-86363172(+)$1	203	91	124	14.8370

#otherMatches

#Seq PSSM
aguaaucgucaggguugauuuggcugaucuggc	chr10:6191536-6191765(+)$1	229	87	120	14.9385
CUGUUCUGUCUCUCCAAAAGAGGCACUACAgga	chr11:16863733-16863941(+)$1	208	36	69	13.8659
AGAUUCCUCUGGGAAGACCCCAGAUCUUCUGUG	chr9:77414743-77414948(+)$1	205	14	47	15.4013
acugauugccaggguugacuuggcugaucgggc	chr6:151640730-151640952(+)$1	222	75	108	13.6061
aaugaggcgcugcauguggcaaucugccuuucu	chr8:144624407-144624653(+)$1	246	128	161	15.1044
auugaucaccagaguugauuuggcugaucuggu	chr7:3038687-3038937(+)$1	250	79	112	15.5846
auugaucgccaggguugauuuggcugaucuggc	chr14:90178875-90179100(+)$1	225	17	50	17.4816
caugugcgucccucccgaagcugcgcgcucggu	chr6:52860428-52860638(+)$1	210	96	129	14.8356
AGAUUCCUCUGGGAAGACCCCAGAUCUUCUGUG	chr9:77414730-77414936(+)$1	206	27	60	15.4013
CUGUUCUGUCUCUCCAAAAGAGGCACUACAgga	chr11:16863723-16863933(+)$1	210	46	79	13.8659
uuccagacacauccaaaugaagugcugcaugug	chr7:111928904-111929109(+)$1	205	53	86	13.7417
gauucggcugaucuggcuggcuaggcggguguc	chr17:70660085-70660340(-)$1	255	103	136	14.0320
UCCUUUGUCCUGCAUGUGGCAGGCUGAUGGGGA	chr2:86363015-86363221(+)$1	206	45	78	14.8370
caugugugucccugcugaagccgcacacuuggu	chr9:107859099-107859354(+)$1	255	43	76	15.7413
uuggugggaauguaaauggcgcagcaccgcaga	chr8:144624202-144624472(+)$1	270	3	36	13.2717
caugugcgucccucccgaagcugcgcgcucggu	chr6:52860423-52860626(+)$1	203	101	134	14.8356
aagacccucauuccaaauGAUACUGGGGggaug	chr4:7114024-7114227(-)$1	203	73	106	15.7982
auugaucgccaggguugauccggcugaucuggu	chr18:1323965-1324187(-)$1	222	139	172	12.3967
AUCCUGAAGGCAGCAUAUUGCUUAGAACAGUGU	chr16:71792220-71792440(-)$1	220	161	194	11.2730
auugaucaccagggaugauuugguugaucuggc	chr9:107859011-107859223(+)$1	212	62	95	15.2685
auugaucgccaaaguugauucggcugaucuggc	chr4:4922643-4922886(-)$1	243	133	166	16.8890
CCUGGGCUGGGCCAGUGGGGCCAAUGCCCAGGG	chr19:48259009-48259214(+)$1	205	167	200	15.1535
CUCGCUCAGGACCCUGAAGGUGCUCACUGUGUC	chr19:48259054-48259260(+)$1	206	6	39	13.9368
CCUGGGCUGGGCCAGUGGGGCCAAUGCCCAGGG	chr19:48259014-48259223(+)$1	209	162	195	15.1535
cuccaaacaagcucucaagguccauuuguagga	chr6:52860603-52860808(+)$1	205	35	68	14.8952
cuccaaacaagcucucaagguccauuuguagga	chr17:34216549-34216814(+)$1	265	149	182	14.8952
UCCUUUGUCCUGCAUGUGGCAGGCUGAUGGGGA	chr2:86362938-86363144(+)$1	206	122	155	14.8370
acgaccauccuugauagacaaggaccagucuuu	chr18:586649-586883(-)$1	234	185	218	14.7768
auugaucgccaggguugauuuggcugaucuggc	chr14:90178755-90178982(+)$1	227	137	170	17.4816
ugaguagcugcgcuccccugcuagaaccuccaa	chr22:37451098-37451304(-)$1	206	111	144	12.4831
caugugcgucccucccgaagcugcgcgcucggu	chr12:112704942-112705186(+)$1	244	45	78	14.8356
auugauuaccaggguugauuuggcugaucuggc	chr11:100710388-100710651(+)$1	263	10	43	15.5846
caggcuggucucgaacuccuaggcucaagaguc	chr9:34270772-34271021(-)$1	249	179	212	13.0250
AGAUUCCUCUGGGAAGACCCCAGAUCUUCUGUG	chr9:77414748-77414952(+)$1	204	9	42	15.4013
gcagcuucaggagggaugcuccuggagcugugc	chr4:168584037-168584298(+)$1	261	202	235	14.6867
agagguagcguuuucuccugagcgugaagccgg	chr17:18965268-18965551(+)$1	283	42	75	12.9433
CCUGGGCUGGGCCAGUGGGGCCAAUGCCCAGGG	chr19:48259060-48259287(+)$1	227	116	149	15.1535
auugaucgccaggguugauuuggcugaucuggc	chr14:90178856-90179075(+)$1	219	36	69	17.4816
auugaucgccaggguugauuuggcugaucuggc	chr14:90178814-90179019(+)$1	205	78	111	17.4816
auugaucgccaaaguugauucggcugaucuggc	chr4:4922640-4922843(-)$1	203	90	123	16.8890
auugaucgccagaguugauucggcugaucuggc	chr13:99857985-99858199(+)$1	214	14	47	12.4213
cgaucuggcugcaacaucugucagcccauugau	chr2:158155403-158155668(-)$1	265	9	42	14.5924
cucucaagguccaAAUAGUGGAAAAUGAAAGUA	chr4:56406683-56406939(-)$1	256	173	206	15.7720
caugugcgucccucccgaagcugcgcgcucggu	chr12:112704857-112705108(+)$1	251	130	163	14.8356
auugaucgccaggguugauuuggcugaucuggc	chr14:90178819-90179056(+)$1	237	73	106	17.4816
uuuuacaauuauaaaaaauauggaugugaggcc	chr21:26473391-26473649(+)$1	258	32	65	11.4412
CUGGGCACCGUAACAAUUUUGCGCUUUGCUUCC	chr4:53578764-53579011(+)$1	247	189	222	15.3276
AGAUUCCUCUGGGAAGACCCCAGAUCUUCUGUG	chr9:77414710-77414930(+)$1	220	47	80	15.4013
aggugaucuggcuggcuaggccaguguccucuu	chr19:33353685-33353952(-)$1	267	13	46	16.0857
uaaacaacagaaauuuauuuucuuacaguucug	chr1:93491708-93491952(+)$1	244	33	66	16.3742
auugaucgccaggguugauuuggcugaucuggc	chr14:90178782-90178992(+)$1	210	110	143	17.4816
uuccagacacauccaaaugaagugcugcaugug	chr7:111928769-111929038(+)$1	269	188	221	13.7417
gccaggguugauuuggcugaucuggcuggcuag	chr12:58371851-58372098(-)$1	247	86	119	14.2656
UCCUUUGUCCUGCAUGUGGCAGGCUGAUGGGGA	chr2:86362969-86363172(+)$1	203	91	124	14.8370

#DB
((..(((((((((.....)))))).))))))).	chr10:6191536-6191765(+)$1	1	87	120	14.9385
((((..(((((((.....)))))))..)))).)	chr11:16863733-16863941(+)$1	1	36	69	13.8659
(((....((((((.....))))))...))))))	chr9:77414743-77414948(+)$1	1	14	47	15.4013
.((((((((((((.....)))))).))))))((	chr6:151640730-151640952(+)$1	1	75	108	13.6061
...((((((.(((.....)))...))))))...	chr8:144624407-144624653(+)$1	1	128	161	15.1044
(..((((((((((.....))))).)))))))).	chr7:3038687-3038937(+)$1	1	79	112	15.5846
(..((((((((((.....)))))).))))))).	chr14:90178875-90179100(+)$1	1	17	50	17.4816
(..((((((..((.....))..))))))..)).	chr6:52860428-52860638(+)$1	1	96	129	14.8356
(((....((((((.....))))))...))))))	chr9:77414730-77414936(+)$1	1	27	60	15.4013
((((..(((((((.....)))))))..)))).)	chr11:16863723-16863933(+)$1	1	46	79	13.8659
...(((.(((.((.....)).))))))....))	chr7:111928904-111929109(+)$1	1	53	86	13.7417
.(((((.(((.((.....)).))).)))))..)	chr17:70660085-70660340(-)$1	1	103	136	14.0320
((.((.(.(((((.....)))))).)).)))))	chr2:86363015-86363221(+)$1	1	45	78	14.8370
((.((((((..((.....))..)))))).))).	chr9:107859099-107859354(+)$1	1	43	76	15.7413
(.((((....(((.....)))...)))))))).	chr8:144624202-144624472(+)$1	1	3	36	13.2717
(..((((((..((.....))..))))))..)).	chr6:52860423-52860626(+)$1	1	101	134	14.8356
(...((((((.((.....))...))))))....	chr4:7114024-7114227(-)$1	1	73	106	15.7982
(..(((((((.((......))))).))))))).	chr18:1323965-1324187(-)$1	1	139	172	12.3967
((((((.(((((......)))))....))).).	chr16:71792220-71792440(-)$1	1	161	194	11.2730
(..((((((((((.....))))).)))))....	chr9:107859011-107859223(+)$1	1	62	95	15.2685
(..(((((((.((.....)).))).))))))).	chr4:4922643-4922886(-)$1	1	133	166	16.8890
(((((((..((((.....))))...))))))))	chr19:48259009-48259214(+)$1	1	167	200	15.1535
(.((...((.(((.....))).))...)).)))	chr19:48259054-48259260(+)$1	1	6	39	13.9368
(((((((..((((.....))))...))))))))	chr19:48259014-48259223(+)$1	1	162	195	15.1535
((.((((...(((.....)))...)))).))).	chr6:52860603-52860808(+)$1	1	35	68	14.8952
((.((((...(((.....)))...)))).))).	chr17:34216549-34216814(+)$1	1	149	182	14.8952
((.((.(.(((((.....)))))).)).)))))	chr2:86362938-86363144(+)$1	1	122	155	14.8370
((.....((((((.....))))))...))))))	chr18:586649-586883(-)$1	1	185	218	14.7768
(..((((((((((.....)))))).))))))).	chr14:90178755-90178982(+)$1	1	137	170	17.4816
((((...(((.((......)))))...)))...	chr22:37451098-37451304(-)$1	1	111	144	12.4831
(..((((((..((.....))..))))))..)).	chr12:112704942-112705186(+)$1	1	45	78	14.8356
(..((((((((((.....))))).)))))))).	chr11:100710388-100710651(+)$1	1	10	43	15.5846
.((((((((((.(.....).)))))....))))	chr9:34270772-34271021(-)$1	1	179	212	13.0250
(((....((((((.....))))))...))))))	chr9:77414748-77414952(+)$1	1	9	42	15.4013
(((((((((((((.....)))))))))))))).	chr4:168584037-168584298(+)$1	1	202	235	14.6867
...(((.((((((......))))))...)))..	chr17:18965268-18965551(+)$1	1	42	75	12.9433
(((((((..((((.....))))...))))))))	chr19:48259060-48259287(+)$1	1	116	149	15.1535
(..((((((((((.....)))))).))))))).	chr14:90178856-90179075(+)$1	1	36	69	17.4816
(..((((((((((.....)))))).))))))).	chr14:90178814-90179019(+)$1	1	78	111	17.4816
(..(((((((.((.....)).))).))))))).	chr4:4922640-4922843(-)$1	1	90	123	16.8890
(..(((((((.((......))))).))))))).	chr13:99857985-99858199(+)$1	1	14	47	12.4213
(((((.(((((((.....)).)))))....)))	chr2:158155403-158155668(-)$1	1	9	42	14.5924
((.(((...((((.....))))...))).))).	chr4:56406683-56406939(-)$1	1	173	206	15.7720
(..((((((..((.....))..))))))..)).	chr12:112704857-112705108(+)$1	1	130	163	14.8356
(..((((((((((.....)))))).))))))).	chr14:90178819-90179056(+)$1	1	73	106	17.4816
..(((((.(((((.....))))).)))))((((	chr21:26473391-26473649(+)$1	1	32	65	11.4412
(((((((.(((((.....)))))...)))....	chr4:53578764-53579011(+)$1	1	189	222	15.3276
(((....((((((.....))))))...))))))	chr9:77414710-77414930(+)$1	1	47	80	15.4013
(((....((((((.....))))))...)))..)	chr19:33353685-33353952(-)$1	1	13	46	16.0857
(..(.((((((((.....)))))....))).).	chr1:93491708-93491952(+)$1	1	33	66	16.3742
(..((((((((((.....)))))).))))))).	chr14:90178782-90178992(+)$1	1	110	143	17.4816
...(((.(((.((.....)).))))))....))	chr7:111928769-111929038(+)$1	1	188	221	13.7417
(((((....((((.....))))...))))))))	chr12:58371851-58372098(-)$1	1	86	119	14.2656
((.((.(.(((((.....)))))).)).)))))	chr2:86362969-86363172(+)$1	1	91	124	14.8370

#PSSM
c : 0.37	d : 0.07	h : 0.07	b : 0.07	f : 0.07	= : 0.07	i : 0.05	: : 0.03	% : 0.03	" : 0.03	g : 0.03	# : 0.01	[ : 0.01	e : 0.01	
! : 0.33	c : 0.11	h : 0.07	= : 0.07	d : 0.05	f : 0.05	e : 0.05	i : 0.05	% : 0.03	[ : 0.03	" : 0.03	g : 0.03	# : 0.01	: : 0.01	
! : 0.35	[ : 0.12	h : 0.07	e : 0.07	= : 0.07	d : 0.05	% : 0.03	" : 0.03	c : 0.03	g : 0.03	f : 0.01	# : 0.01	a : 0.01	b : 0.01	$ : 0.01	
d : 0.27	f : 0.12	e : 0.12	c : 0.11	# : 0.09	b : 0.07	= : 0.07	g : 0.03	! : 0.01	" : 0.01	$ : 0.01	a : 0.01	
d : 0.24	f : 0.14	c : 0.12	e : 0.11	# : 0.09	= : 0.07	b : 0.05	! : 0.03	" : 0.03	g : 0.03	$ : 0.01	[ : 0.01	
d : 0.24	c : 0.14	f : 0.14	# : 0.11	e : 0.11	[ : 0.07	= : 0.07	! : 0.03	" : 0.03	$ : 0.01	
d : 0.22	f : 0.14	# : 0.12	e : 0.11	[ : 0.09	= : 0.07	c : 0.05	a : 0.05	" : 0.05	g : 0.03	$ : 0.01	
f : 0.40	c : 0.16	e : 0.11	[ : 0.09	! : 0.05	" : 0.05	g : 0.03	# : 0.03	b : 0.01	= : 0.01	
f : 0.40	e : 0.22	c : 0.14	! : 0.05	" : 0.05	g : 0.03	# : 0.03	b : 0.01	= : 0.01	
f : 0.29	e : 0.22	c : 0.14	! : 0.09	d : 0.09	g : 0.03	[ : 0.03	" : 0.03	# : 0.01	= : 0.01	
f : 0.27	e : 0.22	[ : 0.16	c : 0.09	! : 0.09	d : 0.09	g : 0.03	= : 0.01	
f : 0.27	b : 0.27	e : 0.18	c : 0.09	d : 0.09	g : 0.03	[ : 0.01	= : 0.01	
f : 0.27	b : 0.27	e : 0.16	c : 0.09	d : 0.09	g : 0.03	o : 0.01	a : 0.01	= : 0.01	
n : 0.90	o : 0.09	
n : 0.90	o : 0.09	
n : 0.90	o : 0.09	
n : 0.90	o : 0.09	
n : 0.90	o : 0.09	
f : 0.25	b : 0.22	e : 0.18	c : 0.09	d : 0.09	o : 0.07	g : 0.03	a : 0.01	= : 0.01	
f : 0.27	b : 0.27	e : 0.18	c : 0.09	d : 0.09	g : 0.03	] : 0.01	= : 0.01	
f : 0.27	e : 0.20	] : 0.11	c : 0.09	2 : 0.09	d : 0.09	b : 0.05	g : 0.03	3 : 0.01	= : 0.01	
f : 0.27	e : 0.22	c : 0.14	3 : 0.09	2 : 0.09	d : 0.09	g : 0.03	] : 0.01	= : 0.01	
f : 0.37	e : 0.22	3 : 0.18	c : 0.14	g : 0.03	b : 0.01	= : 0.01	
f : 0.38	3 : 0.18	c : 0.14	] : 0.07	a : 0.05	g : 0.03	4 : 0.03	e : 0.03	b : 0.01	= : 0.01	
] : 0.29	3 : 0.25	f : 0.14	e : 0.11	d : 0.05	g : 0.03	c : 0.03	4 : 0.03	= : 0.01	
d : 0.24	3 : 0.18	f : 0.14	e : 0.11	c : 0.07	= : 0.07	b : 0.05	4 : 0.05	2 : 0.03	g : 0.01	
d : 0.24	3 : 0.16	f : 0.14	c : 0.09	e : 0.09	4 : 0.07	= : 0.07	b : 0.05	2 : 0.03	g : 0.01	
d : 0.27	f : 0.16	c : 0.12	e : 0.09	h : 0.07	4 : 0.07	= : 0.07	] : 0.05	b : 0.01	3 : 0.01	g : 0.01	
d : 0.25	c : 0.11	e : 0.09	h : 0.07	f : 0.07	2 : 0.07	4 : 0.07	] : 0.07	= : 0.07	i : 0.05	b : 0.01	g : 0.01	
c : 0.38	4 : 0.11	d : 0.07	h : 0.07	2 : 0.07	= : 0.07	f : 0.05	e : 0.05	i : 0.05	] : 0.01	g : 0.01	
c : 0.33	4 : 0.11	d : 0.07	h : 0.07	b : 0.07	= : 0.07	i : 0.05	f : 0.03	2 : 0.03	] : 0.03	e : 0.03	g : 0.03	3 : 0.01	
c : 0.37	h : 0.07	4 : 0.07	b : 0.07	= : 0.07	2 : 0.05	i : 0.05	d : 0.03	] : 0.03	a : 0.03	e : 0.03	g : 0.03	f : 0.01	3 : 0.01	
2 : 0.22	] : 0.14	h : 0.07	c : 0.07	4 : 0.07	= : 0.07	: : 0.05	i : 0.05	a : 0.03	5 : 0.03	3 : 0.03	e : 0.03	d : 0.01	f : 0.01	g : 0.01	b : 0.01	

#score	805.3265762014864
#seq	54
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_UTR_m1_run2.txt

#BEAR
gggggpppppppggggg	chr11:61734777-61735183(-)$1	406	387	404	11.7649
dd[bbpppppppbb333	chr10:17271244-17271509(+)$1	265	33	50	13.1665
eeebbpppppppbb333	chr12:53845991-53846259(+)$1	268	62	79	13.1509
a!!bbpppppppbb22a	chr8:101733876-101734160(-)$1	284	50	67	12.5348
b[cccpppppppccc]b	chr17:49243664-49243956(+)$1	292	220	237	12.2071
&&cccpppppppcccee	chr17:80055905-80056199(-)$1	294	200	217	11.3509
ddcccpppppppccc::	chr12:53845876-53846170(+)$1	294	177	194	11.1408
eeeerrrrrrrrreeee	chr11:2160295-2160563(-)$1	268	32	49	9.6262
dddrrrrrrrrrdddd:	chr6:34212609-34212864(+)$1	255	215	232	8.6961
!cccrrrrrrrrrccc2	chr16:2802651-2802946(+)$1	295	23	40	9.5953
dddrrrrrrrrrdddd:	chr6:26056513-26056763(-)$1	250	101	118	8.6961
!ddddpppppppdddd2	chr11:809924-810140(+)$1	216	8	25	12.3110
cc[bbpppppppbbccc	chr2:232573166-232573418(+)$1	252	146	163	12.5595
eeeeerrrrrrrrreee	chr19:3985275-3985512(-)$1	237	137	154	9.6191
[bbbbpppppppbb]bb	chr3:141595429-141595715(+)$1	286	70	87	11.3820
eeeeepppppppeeeee	chr19:49611208-49611487(+)$1	279	4	21	12.4168
eeebbrrrrrrrrrbb]	chr7:5570061-5570331(-)$1	270	66	83	9.3095
bb[bbrrrrrrrrrbb]	chr20:49547417-49547704(-)$1	287	262	279	8.7301
b!!bbpppppppbb333	chr12:120972416-120972682(+)$1	266	219	236	12.9261
eeeeerrrrrrrrreee	chr1:32403543-32403846(-)$1	303	227	244	9.6191
dd[bbpppppppbbddd	chr16:30081493-30081765(+)$1	272	182	199	12.6674
eeeeepppppppeeeee	chr2:97541639-97542011(-)$1	372	26	43	12.4168
fffffpppppppfffff	chr12:6875608-6875935(+)$1	327	49	66	11.3471
dddrrrrrrrrrddddH	chr11:64001965-64002310(+)$1	345	2	19	8.7592
c[cccpppppppccc22	chr16:30081371-30081599(+)$1	228	150	167	12.6144
eeeeerrrrrrrrreee	chr11:2160379-2160642(-)$1	263	110	127	9.6191
:ddddpppppppddddC	chr11:809866-810124(+)$1	258	66	83	10.5266
c!!bbpppppppbb22c	chr11:5274382-5274724(-)$1	342	56	73	12.4963
dd[bbpppppppbb]dd	chr6:37138029-37138340(+)$1	311	69	86	12.6388
fffffpppppppfffff	chr1:156721115-156721397(-)$1	282	94	111	11.3471
ddd[apppppppa]ddd	chr16:30077030-30077350(+)$1	320	226	243	12.2730
:ddddpppppppdddd:	chr6:34212678-34212944(+)$1	266	153	170	10.7288
eeeeepppppppeeeee	chr19:3985312-3985559(-)$1	247	113	130	12.4168
ccc[apppppppa]ccc	chr16:2802591-2802851(+)$1	260	153	170	12.1736
d[cccpppppppccc]d	chr13:45915174-45915417(-)$1	243	94	111	12.5495
eeeeepppppppeeeee	chr19:6424621-6424892(-)$1	271	44	61	12.4168
[ddddpppppppdddd]	chr8:101733713-101733973(-)$1	260	206	223	12.3336
eeeeepppppppeeeee	chr9:100745555-100745887(+)$1	332	232	249	12.4168
##cccpppppppccc22	chr20:62152052-62152310(+)$1	258	108	125	12.4718
fa[bbpppppppbb333	chr16:88870116-88870414(+)$1	298	202	219	12.9160

#otherMatches

#Seq PSSM
UUACCUGUCCAUGGUGA	chr11:61734777-61735183(-)$1	406	387	404	11.7649
UCUGCCACUCUCGCUCC	chr10:17271244-17271509(+)$1	265	33	50	13.1665
GGGGccccccucgccuu	chr12:53845991-53846259(+)$1	268	62	79	13.1509
GACCGAcccgcccgccc	chr8:101733876-101734160(-)$1	284	50	67	12.5348
GCGACUCCUCCCGUUCC	chr17:49243664-49243956(+)$1	292	220	237	12.2071
cAGGUACGAGCAgccgg	chr17:80055905-80056199(-)$1	294	200	217	11.3509
GGGGccccccucgccuu	chr12:53845876-53846170(+)$1	294	177	194	11.1408
CGCUCUGCCCACCAGCG	chr11:2160295-2160563(-)$1	268	32	49	9.6262
AGCACACCAGCCGCUGC	chr6:34212609-34212864(+)$1	255	215	232	8.6961
UGGCGCAGUUGGAGCCC	chr16:2802651-2802946(+)$1	295	23	40	9.5953
CUCAACAUGUCCGAGAC	chr6:26056513-26056763(-)$1	250	101	118	8.6961
AGCGGUUUAACCCCGCC	chr11:809924-810140(+)$1	216	8	25	12.3110
cgcgccuccuccgccgc	chr2:232573166-232573418(+)$1	252	146	163	12.5595
GUGAGUAACCCUGCCUC	chr19:3985275-3985512(-)$1	237	137	154	9.6191
UCCCCGUAACGAGGAGG	chr3:141595429-141595715(+)$1	286	70	87	11.3820
GCUCCAGGGAGCGGAGC	chr19:49611208-49611487(+)$1	279	4	21	12.4168
GCCCUAUAAAACCCAGC	chr7:5570061-5570331(-)$1	270	66	83	9.3095
gccgccauccgcccgcc	chr20:49547417-49547704(-)$1	287	262	279	8.7301
gccgccgccaccgccuc	chr12:120972416-120972682(+)$1	266	219	236	12.9261
GGACUUCAAUGCCCAGU	chr1:32403543-32403846(-)$1	303	227	244	9.6191
GAAUGCUAAGUCCAUCA	chr16:30081493-30081765(+)$1	272	182	199	12.6674
UCCUGGCUUCAGCAGGA	chr2:97541639-97542011(-)$1	372	26	43	12.4168
GGUCUCCGCUCCAGACC	chr12:6875608-6875935(+)$1	327	49	66	11.3471
cccccgccccACGGGCC	chr11:64001965-64002310(+)$1	345	2	19	8.7592
CACGCCUAUUAAGCGGA	chr16:30081371-30081599(+)$1	228	150	167	12.6144
GCGCUCUGCCCACCAGC	chr11:2160379-2160642(-)$1	263	110	127	9.6191
AGCGGUUUAACCCCGCC	chr11:809866-810124(+)$1	258	66	83	10.5266
GUUCAUCUUUAUUGUCU	chr11:5274382-5274724(-)$1	342	56	73	12.4963
GCCGCUCACCCCGCCGU	chr6:37138029-37138340(+)$1	311	69	86	12.6388
CGGCGCCGCCACCGCCG	chr1:156721115-156721397(-)$1	282	94	111	11.3471
CCCUCUUCACGUGCGGG	chr16:30077030-30077350(+)$1	320	226	243	12.2730
CAGCCGCUGCAGGGCUC	chr6:34212678-34212944(+)$1	266	153	170	10.7288
CGCCGCCAUCCUCGGCG	chr19:3985312-3985559(-)$1	247	113	130	12.4168
CCGGCGAGGCGAGGCGG	chr16:2802591-2802851(+)$1	260	153	170	12.1736
UCGGCCUUUUCCGCCCG	chr13:45915174-45915417(-)$1	243	94	111	12.5495
GUCGUCCUCCCAGCGGC	chr19:6424621-6424892(-)$1	271	44	61	12.4168
GGGGGACCUCCACCCCG	chr8:101733713-101733973(-)$1	260	206	223	12.3336
UCCGCCCCCGCCGCGGA	chr9:100745555-100745887(+)$1	332	232	249	12.4168
UUCUCUGCAAAUGGGCU	chr20:62152052-62152310(+)$1	258	108	125	12.4718
GCCGCACCCCCAGCCCC	chr16:88870116-88870414(+)$1	298	202	219	12.9160

#DB
(((((.......)))))	chr11:61734777-61735183(-)$1	1	387	404	11.7649
((.((.......))...	chr10:17271244-17271509(+)$1	1	33	50	13.1665
(((((.......))...	chr12:53845991-53846259(+)$1	1	62	79	13.1509
(..((.......))..)	chr8:101733876-101734160(-)$1	1	50	67	12.5348
(.(((.......))).)	chr17:49243664-49243956(+)$1	1	220	237	12.2071
..(((.......)))))	chr17:80055905-80056199(-)$1	1	200	217	11.3509
))(((.......)))..	chr12:53845876-53846170(+)$1	1	177	194	11.1408
((((.........))))	chr11:2160295-2160563(-)$1	1	32	49	9.6262
(((.........)))).	chr6:34212609-34212864(+)$1	1	215	232	8.6961
.(((.........))).	chr16:2802651-2802946(+)$1	1	23	40	9.5953
(((.........)))).	chr6:26056513-26056763(-)$1	1	101	118	8.6961
.((((.......)))).	chr11:809924-810140(+)$1	1	8	25	12.3110
((.((.......)))))	chr2:232573166-232573418(+)$1	1	146	163	12.5595
(((((.........)))	chr19:3985275-3985512(-)$1	1	137	154	9.6191
.((((.......)).))	chr3:141595429-141595715(+)$1	1	70	87	11.3820
(((((.......)))))	chr19:49611208-49611487(+)$1	1	4	21	12.4168
(((((.........)).	chr7:5570061-5570331(-)$1	1	66	83	9.3095
((.((.........)).	chr20:49547417-49547704(-)$1	1	262	279	8.7301
(..((.......))...	chr12:120972416-120972682(+)$1	1	219	236	12.9261
(((((.........)))	chr1:32403543-32403846(-)$1	1	227	244	9.6191
((.((.......)))))	chr16:30081493-30081765(+)$1	1	182	199	12.6674
(((((.......)))))	chr2:97541639-97542011(-)$1	1	26	43	12.4168
(((((.......)))))	chr12:6875608-6875935(+)$1	1	49	66	11.3471
(((.........))))(	chr11:64001965-64002310(+)$1	1	2	19	8.7592
(.(((.......)))..	chr16:30081371-30081599(+)$1	1	150	167	12.6144
(((((.........)))	chr11:2160379-2160642(-)$1	1	110	127	9.6191
.((((.......)))))	chr11:809866-810124(+)$1	1	66	83	10.5266
(..((.......))..)	chr11:5274382-5274724(-)$1	1	56	73	12.4963
((.((.......)).))	chr6:37138029-37138340(+)$1	1	69	86	12.6388
(((((.......)))))	chr1:156721115-156721397(-)$1	1	94	111	11.3471
(((.(.......).)))	chr16:30077030-30077350(+)$1	1	226	243	12.2730
.((((.......)))).	chr6:34212678-34212944(+)$1	1	153	170	10.7288
(((((.......)))))	chr19:3985312-3985559(-)$1	1	113	130	12.4168
(((.(.......).)))	chr16:2802591-2802851(+)$1	1	153	170	12.1736
(.(((.......))).)	chr13:45915174-45915417(-)$1	1	94	111	12.5495
(((((.......)))))	chr19:6424621-6424892(-)$1	1	44	61	12.4168
.((((.......)))).	chr8:101733713-101733973(-)$1	1	206	223	12.3336
(((((.......)))))	chr9:100745555-100745887(+)$1	1	232	249	12.4168
..(((.......)))..	chr20:62152052-62152310(+)$1	1	108	125	12.4718
((.((.......))...	chr16:88870116-88870414(+)$1	1	202	219	12.9160

#PSSM
e : 0.27	d : 0.22	c : 0.10	b : 0.07	f : 0.07	! : 0.05	[ : 0.05	: : 0.05	g : 0.02	a : 0.02	& : 0.02	# : 0.02	
d : 0.30	e : 0.27	! : 0.07	[ : 0.07	c : 0.07	b : 0.05	f : 0.05	g : 0.02	& : 0.02	# : 0.02	a : 0.02	
e : 0.27	c : 0.19	d : 0.19	[ : 0.15	! : 0.07	f : 0.05	g : 0.02	b : 0.02	
b : 0.30	e : 0.22	c : 0.17	d : 0.10	r : 0.07	f : 0.05	[ : 0.05	g : 0.02	
b : 0.30	e : 0.19	c : 0.15	r : 0.12	d : 0.10	f : 0.05	a : 0.05	g : 0.02	
p : 0.75	r : 0.24	
p : 0.75	r : 0.24	
p : 0.75	r : 0.24	
p : 0.75	r : 0.24	
p : 0.75	r : 0.24	
p : 0.75	r : 0.24	
p : 0.75	r : 0.24	
b : 0.24	r : 0.17	d : 0.17	c : 0.15	e : 0.12	f : 0.05	a : 0.05	g : 0.02	
b : 0.24	c : 0.17	d : 0.17	e : 0.15	r : 0.12	f : 0.05	] : 0.05	g : 0.02	
c : 0.22	e : 0.22	d : 0.22	3 : 0.10	2 : 0.05	] : 0.05	b : 0.05	f : 0.05	g : 0.02	
e : 0.24	d : 0.24	3 : 0.10	2 : 0.10	c : 0.07	b : 0.07	] : 0.05	f : 0.05	g : 0.02	: : 0.02	
e : 0.24	3 : 0.10	: : 0.10	2 : 0.10	d : 0.10	c : 0.07	] : 0.07	b : 0.05	f : 0.05	g : 0.02	a : 0.02	H : 0.02	C : 0.02	

#score	457.9346471505801
#seq	40
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_transcript_m2_run1.txt

#BEAR
d[eeeeeuuuuuuuuuuuueeeee]	chr17:62496674-62496914(-)$1	240	136	161	23.2247
e!!cccxxxxxxxxxxxxxxxccce	chr14:24107819-24108043(+)$1	224	99	124	17.6068
%eeeeevvvvvvvvvvvvveeeeec	chr5:6599459-6599732(-)$1	273	118	143	21.6582
iifffffftttttttttttffffff	chr20:57274160-57274402(+)$1	242	122	147	22.1456
[ffffffwwwwwwwwwwwwwwffff	chr20:61920580-61920829(+)$1	249	78	103	21.9044
fffff[auuuuuuuuuuuuafffff	chr22:30775291-30775625(-)$1	334	159	184	23.0202
gggggggwwwwwwwwwwwwwwgggg	chr9:117069955-117070158(+)$1	203	130	155	22.4630
b[ddddvvvvvvvvvvvvvdddd]b	chr8:145654541-145654820(-)$1	279	73	98	21.2327
dccccccuuuuuuuuuuuuccc]cc	chr14:24031398-24031617(-)$1	219	31	56	23.1686
c!!eeeeettttttttttteeeee3	chr16:31200914-31201133(+)$1	219	14	39	23.0114
ggggggguuuuuuuuuuuugggggg	chr6:35442269-35442561(-)$1	292	183	208	23.4659
b[fffffftttttttttttffffff	chr16:8988306-8988581(-)$1	275	138	163	22.0838
hhhhhhhhttttttttttthhhhhh	chr1:8769165-8769392(-)$1	227	180	205	20.0511
D::dddduuuuuuuuuuuuddddFF	chr14:24106051-24106277(+)$1	226	73	98	18.9900
eedddd[attttttttttta]dddd	chr12:112194488-112194787(+)$1	299	104	129	21.8933
dd!!ddddvvvvvvvvvvvvvdddd	chr3:49052435-49052679(+)$1	244	98	123	20.9805
ccc[cccuuuuuuuuuuuucccccc	chrX:18911032-18911307(-)$1	275	249	274	23.5555
ddda[bbuuuuuuuuuuuubb]a]d	chr19:10802682-10802953(+)$1	271	235	260	21.4151
!eeeeexxxxxxxxxxxxxxxeeee	chrX:48681860-48682097(+)$1	237	192	217	17.4234
%%%eeeeettttttttttteeeee2	chr3:38164288-38164582(-)$1	294	256	281	20.8407
ccc[cccvvvvvvvvvvvvvccccc	chr19:55602293-55602591(-)$1	298	271	296	22.9175
cc[eeeeettttttttttteeeee3	chr16:603776-604030(+)$1	254	3	28	22.8457
ee:eeeeettttttttttteeeeeb	chr21:9907324-9907608(-)$1	284	163	188	21.0909
c!!cccxxxxxxxxxxxxxxxccc3	chr20:39987573-39987819(+)$1	246	74	99	18.0369
gggggggwwwwwwwwwwwwwwgggg	chr9:117069930-117070155(+)$1	225	155	180	22.4630
gggggggvvvvvvvvvvvvvggggg	chr2:85772035-85772247(+)$1	212	90	115	22.9578
ff!!ddddvvvvvvvvvvvvvdddd	chr3:33429882-33430199(-)$1	317	212	237	21.0724
!!a[cccvvvvvvvvvvvvvccc]a	chr19:2231509-2231761(+)$1	252	45	70	23.0378
gggggggguuuuuuuuuuuuggggg	chr1:227141476-227141734(+)$1	258	172	197	22.9117
[ffffffuuuuuuuuuuuuffffff	chr17:64794184-64794464(+)$1	280	230	255	22.9461
b!!eeeeettttttttttteeeee2	chr17:62223504-62223751(+)$1	247	130	155	22.5643
%eeeeevvvvvvvvvvvvveeeee6	chr3:184107172-184107440(+)$1	268	162	187	21.2486
::fffffftttttttttttffffff	chr19:36113474-36113736(+)$1	262	214	239	20.4339
ccccccyyyyyyyyyyyyyyyyccc	chr17:73126310-73126594(-)$1	284	235	260	21.6583
ggggggguuuuuuuuuuuugggggg	chr19:10801620-10801862(+)$1	242	132	157	23.4659
ffffffyyyyyyyyyyyyyyyyfff	chr21:46189933-46190187(-)$1	254	65	90	21.2337
c!!cccxxxxxxxxxxxxxxxccc3	chr20:39987487-39987744(+)$1	257	160	185	18.0369
""ddddyyyyyyyyyyyyyyyyddd	chr7:74077202-74077494(+)$1	292	6	31	20.9316
$$$eeeeettttttttttteeeee5	chr22:38879369-38879608(-)$1	239	147	172	21.3864
ggggggbbtttttttttttbb]ggg	chr1:156352551-156352761(+)$1	210	163	188	22.1410
hhhhhhhhuuuuuuuuuuuuhhhhh	chr1:40766483-40766806(-)$1	323	270	295	20.5528
hhhhhhhhttttttttttthhhhhh	chr4:26860217-26860522(+)$1	305	70	95	20.0511
$ffffffuuuuuuuuuuuuffffff	chr16:71962718-71962964(+)$1	246	211	236	22.7791
hhhhhh[attttttttttta]hhhh	chr17:78674711-78675031(+)$1	320	282	307	21.6186
ccc[ddddtttttttttttddddcc	chr20:2816075-2816329(-)$1	254	159	184	22.1850
::fffffftttttttttttffffff	chr9:117071551-117071784(+)$1	233	118	143	20.4339
%%ddddvvvvvvvvvvvvvddddee	chr14:24108547-24108791(+)$1	244	46	71	20.4641
:ffffffuuuuuuuuuuuuffffff	chr14:24105830-24106041(+)$1	211	31	56	22.0536
ffffffvvvvvvvvvvvvvffffff	chr16:30760946-30761206(+)$1	260	151	176	21.7672
abb!!cccuuuuuuuuuuuuccc22	chr17:46058819-46059063(+)$1	244	13	38	22.0809
Dcccddddtttttttttttdddd33	chr5:179041582-179041808(-)$1	226	193	218	21.0825
[bb!!bbuuuuuuuuuuuubb22bb	chr17:48551933-48552198(+)$1	265	60	85	20.8195
ggggggyyyyyyyyyyyyyyyyggg	chr20:44526363-44526643(+)$1	280	45	70	21.9587
[bb[dddduuuuuuuuuuuudddd]	chr6:30774574-30774895(-)$1	321	66	91	21.9550
gggggggwwwwwwwwwwwwwwgggg	chr14:21484863-21485179(-)$1	316	214	239	22.4630

#otherMatches

#Seq PSSM
UUCUUUACACCUAAUAACAUAAAGC	chr17:62496674-62496914(-)$1	240	136	161	23.2247
CCUGACUCUCUGCCACUUUCUGUUG	chr14:24107819-24108043(+)$1	224	99	124	17.6068
AAGCUUUAAUAAUUACAUUGAGCUG	chr5:6599459-6599732(-)$1	273	118	143	21.6582
AUCAUCCCAACCAUCAUCCGGGAUG	chr20:57274160-57274402(+)$1	242	122	147	22.1456
GUGGGGGUCUUUGAGUGUCUUUCUC	chr20:61920580-61920829(+)$1	249	78	103	21.9044
GUGGGAGGAAGGAUGAGGGCCCCAC	chr22:30775291-30775625(-)$1	334	159	184	23.0202
CAGGCUGUCUGCCUCUAUCCCCAGC	chr9:117069955-117070158(+)$1	203	130	155	22.4630
CUGAGGUCUGCCCUCUUCCCCUCCG	chr8:145654541-145654820(-)$1	279	73	98	21.2327
GCUGCAGUCCCACAUGUCCCUGCCA	chr14:24031398-24031617(-)$1	219	31	56	23.1686
UGGAAAGGGAGUACUGUAGCCUUUA	chr16:31200914-31201133(+)$1	219	14	39	23.0114
GAGGGGCCCACACUUCCUUGCCCCU	chr6:35442269-35442561(-)$1	292	183	208	23.4659
UAUGAAGUAAAUUUGAAAGACUUUG	chr16:8988306-8988581(-)$1	275	138	163	22.0838
ggucaggagaucgagaccauccugg	chr1:8769165-8769392(-)$1	227	180	205	20.0511
gaaagggaucucuaacaaccccugg	chr14:24106051-24106277(+)$1	226	73	98	18.9900
AGUCCCUCUCUCUCUGCCUGUGGGA	chr12:112194488-112194787(+)$1	299	104	129	21.8933
UCUCAGCCUCCAUUGAUCAACGGCU	chr3:49052435-49052679(+)$1	244	98	123	20.9805
CAUAGCCUUCCAUUUUAUUGGCAUG	chrX:18911032-18911307(-)$1	275	249	274	23.5555
CUUCUGGAUUCCAUCUGCACCUGUG	chr19:10802682-10802953(+)$1	271	235	260	21.4151
UGAUACAUCUCUUACUUCUGCGUGU	chrX:48681860-48682097(+)$1	237	192	217	17.4234
UUAGCUGUGCAAGAUAAAAGCAGCC	chr3:38164288-38164582(-)$1	294	256	281	20.8407
CACAGGCACCACAAAUAAAAGUCGU	chr19:55602293-55602591(-)$1	298	271	296	22.9175
CCAGCCCCAACACCCGACGGGGGCC	chr16:603776-604030(+)$1	254	3	28	22.8457
GGAGCUGUACAAGUCCAUCACAGCG	chr21:9907324-9907608(-)$1	284	163	188	21.0909
AGAGACUCCCCCAUCUUCCCCGUCA	chr20:39987573-39987819(+)$1	246	74	99	18.0369
CAGGCUGUCUGCCUCUAUCCCCAGC	chr9:117069930-117070155(+)$1	225	155	180	22.4630
CCAAGGUGUCCUACAGAAAAACCUU	chr2:85772035-85772247(+)$1	212	90	115	22.9578
CUUAUCAGACUUGAAAUUAUACUGA	chr3:33429882-33430199(-)$1	317	212	237	21.0724
CCGGACCUGUCCUCUUAAGUGGUGC	chr19:2231509-2231761(+)$1	252	45	70	23.0378
CUUUUUCUAAGAGUAAAAAAGGAAA	chr1:227141476-227141734(+)$1	258	172	197	22.9117
UGCAGUACCUUCUUGAAUCUACUGC	chr17:64794184-64794464(+)$1	280	230	255	22.9461
ACCCCAUUCCCGUCAAUAAAGUGGU	chr17:62223504-62223751(+)$1	247	130	155	22.5643
CUCCCACCCCCACUACCUCUGGGAA	chr3:184107172-184107440(+)$1	268	162	187	21.2486
GGGGCCUGAUGAGAAGGAGCAGGCC	chr19:36113474-36113736(+)$1	262	214	239	20.4339
CCAGUCGGGACCUUUAAUAAAAGAC	chr17:73126310-73126594(-)$1	284	235	260	21.6583
AGGGGUUGGGACAAGAAGAGACUCC	chr19:10801620-10801862(+)$1	242	132	157	23.4659
GGGAAUUUAUUAGCACAAAAUCAUU	chr21:46189933-46190187(-)$1	254	65	90	21.2337
AGAGACUCCCCCAUCUUCCCCGUCA	chr20:39987487-39987744(+)$1	257	160	185	18.0369
AUGGUUUUAGUUUACAGUUGAUGAC	chr7:74077202-74077494(+)$1	292	6	31	20.9316
AAAACACUGUUGACAAUAAGGUGUG	chr22:38879369-38879608(-)$1	239	147	172	21.3864
AUGAauucauucacucauagauauu	chr1:156352551-156352761(+)$1	210	163	188	22.1410
CACUGGCCAUCUUGUCCUUGGGUCA	chr1:40766483-40766806(-)$1	323	270	295	20.5528
UUCCGGCUAUUCAUUUAACAGCUGG	chr4:26860217-26860522(+)$1	305	70	95	20.0511
GUCAGAUGAUGAAGUAUAAAUCUGG	chr16:71962718-71962964(+)$1	246	211	236	22.7791
UUCACAUCUGGGAACAAAUGCUGUG	chr17:78674711-78675031(+)$1	320	282	307	21.6186
CUGAUCCACACAUACAAACUGGACA	chr20:2816075-2816329(-)$1	254	159	184	22.1850
AGCAGGCCGUACGCUUCCGGGCCUG	chr9:117071551-117071784(+)$1	233	118	143	20.4339
GAGAGGGGAACAUGCAGAACCUUUC	chr14:24108547-24108791(+)$1	244	46	71	20.4641
uggugacuuugaagagacugucacc	chr14:24105830-24106041(+)$1	211	31	56	22.0536
AGGGCAGAAAAGAUGCGUAUGCCCU	chr16:30760946-30761206(+)$1	260	151	176	21.7672
GGGCGCCCUGUGAACCUGAUGGGAA	chr17:46058819-46059063(+)$1	244	13	38	22.0809
UUCCAGCUUUUCUCAAGUUAGUUAU	chr5:179041582-179041808(-)$1	226	193	218	21.0825
ccccagcacccaguucugagccagg	chr17:48551933-48552198(+)$1	265	60	85	20.8195
GGGGGAUGAGUGGUUUGUGGAUUCC	chr20:44526363-44526643(+)$1	280	45	70	21.9587
aggcugcccgaaccagcauuggcaa	chr6:30774574-30774895(-)$1	321	66	91	21.9550
CUUCUGCUAUAACAAUAAACUGUAG	chr14:21484863-21485179(-)$1	316	214	239	22.4630

#DB
(.(((((............))))).	chr17:62496674-62496914(-)$1	1	136	161	23.2247
(..(((...............))))	chr14:24107819-24108043(+)$1	1	99	124	17.6068
.(((((.............))))))	chr5:6599459-6599732(-)$1	1	118	143	21.6582
))((((((...........))))))	chr20:57274160-57274402(+)$1	1	122	147	22.1456
.((((((..............))))	chr20:61920580-61920829(+)$1	1	78	103	21.9044
(((((.(............))))))	chr22:30775291-30775625(-)$1	1	159	184	23.0202
(((((((..............))))	chr9:117069955-117070158(+)$1	1	130	155	22.4630
(.((((.............)))).)	chr8:145654541-145654820(-)$1	1	73	98	21.2327
(((((((............))).))	chr14:24031398-24031617(-)$1	1	31	56	23.1686
(..(((((...........))))).	chr16:31200914-31201133(+)$1	1	14	39	23.0114
(((((((............))))))	chr6:35442269-35442561(-)$1	1	183	208	23.4659
(.((((((...........))))))	chr16:8988306-8988581(-)$1	1	138	163	22.0838
((((((((...........))))))	chr1:8769165-8769392(-)$1	1	180	205	20.0511
(..((((............))))((	chr14:24106051-24106277(+)$1	1	73	98	18.9900
((((((.(...........).))))	chr12:112194488-112194787(+)$1	1	104	129	21.8933
((..((((.............))))	chr3:49052435-49052679(+)$1	1	98	123	20.9805
(((.(((............))))))	chrX:18911032-18911307(-)$1	1	249	274	23.5555
((((.((............)).).)	chr19:10802682-10802953(+)$1	1	235	260	21.4151
.(((((...............))))	chrX:48681860-48682097(+)$1	1	192	217	17.4234
...(((((...........))))).	chr3:38164288-38164582(-)$1	1	256	281	20.8407
(((.(((.............)))))	chr19:55602293-55602591(-)$1	1	271	296	22.9175
((.(((((...........))))).	chr16:603776-604030(+)$1	1	3	28	22.8457
)).(((((...........)))))(	chr21:9907324-9907608(-)$1	1	163	188	21.0909
(..(((...............))).	chr20:39987573-39987819(+)$1	1	74	99	18.0369
(((((((..............))))	chr9:117069930-117070155(+)$1	1	155	180	22.4630
(((((((.............)))))	chr2:85772035-85772247(+)$1	1	90	115	22.9578
((..((((.............))))	chr3:33429882-33430199(-)$1	1	212	237	21.0724
..(.(((.............))).)	chr19:2231509-2231761(+)$1	1	45	70	23.0378
)(((((((............)))))	chr1:227141476-227141734(+)$1	1	172	197	22.9117
.((((((............))))))	chr17:64794184-64794464(+)$1	1	230	255	22.9461
(..(((((...........))))).	chr17:62223504-62223751(+)$1	1	130	155	22.5643
.(((((.............))))).	chr3:184107172-184107440(+)$1	1	162	187	21.2486
..((((((...........))))))	chr19:36113474-36113736(+)$1	1	214	239	20.4339
)))(((................)))	chr17:73126310-73126594(-)$1	1	235	260	21.6583
(((((((............))))))	chr19:10801620-10801862(+)$1	1	132	157	23.4659
((((((................)))	chr21:46189933-46190187(-)$1	1	65	90	21.2337
(..(((...............))).	chr20:39987487-39987744(+)$1	1	160	185	18.0369
..((((................)))	chr7:74077202-74077494(+)$1	1	6	31	20.9316
...(((((...........))))).	chr22:38879369-38879608(-)$1	1	147	172	21.3864
((((((((...........)).)))	chr1:156352551-156352761(+)$1	1	163	188	22.1410
((((((((............)))))	chr1:40766483-40766806(-)$1	1	270	295	20.5528
((((((((...........))))))	chr4:26860217-26860522(+)$1	1	70	95	20.0511
.((((((............))))))	chr16:71962718-71962964(+)$1	1	211	236	22.7791
((((((.(...........).))))	chr17:78674711-78675031(+)$1	1	282	307	21.6186
(((.((((...........))))))	chr20:2816075-2816329(-)$1	1	159	184	22.1850
..((((((...........))))))	chr9:117071551-117071784(+)$1	1	118	143	20.4339
..((((.............))))))	chr14:24108547-24108791(+)$1	1	46	71	20.4641
.((((((............))))))	chr14:24105830-24106041(+)$1	1	31	56	22.0536
((((((.............))))))	chr16:30760946-30761206(+)$1	1	151	176	21.7672
(((..(((............)))..	chr17:46058819-46059063(+)$1	1	13	38	22.0809
)(((((((...........))))..	chr5:179041582-179041808(-)$1	1	193	218	21.0825
.((..((............))..))	chr17:48551933-48552198(+)$1	1	60	85	20.8195
((((((................)))	chr20:44526363-44526643(+)$1	1	45	70	21.9587
.((.((((............)))).	chr6:30774574-30774895(-)$1	1	66	91	21.9550
(((((((..............))))	chr14:21484863-21485179(-)$1	1	214	239	22.4630

#PSSM
g : 0.16	c : 0.14	d : 0.07	% : 0.07	[ : 0.07	f : 0.07	h : 0.07	e : 0.05	b : 0.05	: : 0.05	D : 0.03	! : 0.03	$ : 0.03	i : 0.01	" : 0.01	a : 0.01	
g : 0.16	f : 0.14	c : 0.12	! : 0.10	e : 0.09	h : 0.07	[ : 0.05	: : 0.05	b : 0.05	d : 0.03	% : 0.03	i : 0.01	" : 0.01	$ : 0.01	
f : 0.20	g : 0.16	! : 0.12	c : 0.10	d : 0.09	e : 0.07	h : 0.07	b : 0.05	: : 0.03	% : 0.01	[ : 0.01	a : 0.01	$ : 0.01	
f : 0.20	e : 0.18	g : 0.16	c : 0.10	d : 0.09	[ : 0.09	h : 0.07	! : 0.07	a : 0.01	
f : 0.20	e : 0.18	d : 0.18	g : 0.16	c : 0.14	h : 0.07	! : 0.03	[ : 0.01	
e : 0.18	f : 0.18	d : 0.18	c : 0.16	g : 0.16	h : 0.07	b : 0.03	[ : 0.01	
f : 0.14	e : 0.12	g : 0.12	d : 0.10	v : 0.09	c : 0.09	x : 0.07	y : 0.07	h : 0.05	b : 0.05	[ : 0.03	a : 0.01	
u : 0.21	v : 0.14	e : 0.10	d : 0.09	x : 0.07	f : 0.07	w : 0.07	y : 0.07	h : 0.05	a : 0.03	g : 0.01	b : 0.01	c : 0.01	
t : 0.30	u : 0.29	v : 0.18	x : 0.07	w : 0.07	y : 0.07	
t : 0.30	u : 0.29	v : 0.18	x : 0.07	w : 0.07	y : 0.07	
t : 0.30	u : 0.29	v : 0.18	x : 0.07	w : 0.07	y : 0.07	
t : 0.30	u : 0.29	v : 0.18	x : 0.07	w : 0.07	y : 0.07	
t : 0.30	u : 0.29	v : 0.18	x : 0.07	w : 0.07	y : 0.07	
t : 0.30	u : 0.29	v : 0.18	x : 0.07	w : 0.07	y : 0.07	
t : 0.30	u : 0.29	v : 0.18	x : 0.07	w : 0.07	y : 0.07	
t : 0.30	u : 0.29	v : 0.18	x : 0.07	w : 0.07	y : 0.07	
t : 0.30	u : 0.29	v : 0.18	x : 0.07	w : 0.07	y : 0.07	
t : 0.30	u : 0.29	v : 0.18	x : 0.07	w : 0.07	y : 0.07	
t : 0.30	u : 0.29	v : 0.18	x : 0.07	w : 0.07	y : 0.07	
e : 0.16	f : 0.14	d : 0.09	v : 0.09	x : 0.07	w : 0.07	u : 0.07	y : 0.07	a : 0.05	b : 0.05	c : 0.03	g : 0.03	h : 0.03	
e : 0.16	f : 0.16	d : 0.10	c : 0.09	x : 0.07	w : 0.07	g : 0.07	y : 0.07	h : 0.05	b : 0.05	] : 0.03	v : 0.03	
e : 0.18	f : 0.18	d : 0.16	c : 0.14	g : 0.12	h : 0.07	y : 0.07	] : 0.03	2 : 0.01	
f : 0.20	e : 0.18	d : 0.18	g : 0.16	c : 0.14	h : 0.07	] : 0.01	a : 0.01	2 : 0.01	
e : 0.20	f : 0.20	g : 0.16	c : 0.14	d : 0.09	h : 0.07	] : 0.05	F : 0.01	2 : 0.01	3 : 0.01	b : 0.01	
f : 0.20	g : 0.16	c : 0.10	3 : 0.09	d : 0.09	h : 0.07	e : 0.05	b : 0.05	2 : 0.05	] : 0.03	F : 0.01	a : 0.01	6 : 0.01	5 : 0.01	

#score	1185.783351553817
#seq	55
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF305BNZ_LARP7_transcript_m2_run2.txt

#BEAR
[bb!!eeeeemmmmeeeee]bb333gggg	chr9:25089000-25089250(-)$1	250	117	146	14.2531
%eeeeeeeeeellleeeee333eeeeecc	chr9:77414756-77414960(+)$1	204	98	127	19.5816
cc"""eeeeemmmmeeeee]ccc]dddd]	chr11:46783843-46784055(-)$1	212	37	66	15.4488
ccc!!eeeeemmmmeeeee]ccc22gggg	chr9:77414710-77414930(+)$1	220	116	145	15.0840
"""eeeeeooooooeeeee4444bbdddd	chr22:37451098-37451304(-)$1	206	58	87	14.7356
:eeeeeeeeeellleeeee333eeeeeBB	chr4:168584037-168584298(+)$1	261	143	172	17.0535
Feeeeeeeeeellleeeee333eeeeebb	chr22:42961068-42961312(-)$1	244	20	49	18.3133
ccc!!eeeeemmmmeeeee]ccc22gggg	chr14:50535190-50535451(+)$1	261	110	139	15.0840
eeeeeeeeeennnnneeeee22eeeee00	chr16:67355461-67355717(-)$1	256	125	154	13.8162
!!ddddeeeeellleeeee333dddd22c	chr2:207086019-207086242(+)$1	223	63	92	16.5887
beeeeeeeeeellleeeee]eeeee]bb:	chr19:48259009-48259214(+)$1	205	126	155	15.0574
cc"""eeeeemmmmeeeee]ccc]dddd]	chr11:46783903-46784107(-)$1	204	89	118	15.4488
eeeeeeeeeennnnneeeee22eeeee33	chr6:52860603-52860808(+)$1	205	113	142	14.6940
cc"""eeeeemmmmeeeee]ccc]dddd]	chr11:46783899-46784103(-)$1	204	85	114	15.4488
ccc!!eeeeemmmmeeeee]ccc22gggg	chr13:99857968-99858185(+)$1	217	9	38	15.0840
eeee[eeeeemmmmeeeee333eeeee33	chr19:50000942-50001149(+)$1	207	64	93	18.0332
fffff[eeeeellleeeeeffffffccc3	chr5:6848434-6848670(-)$1	236	141	170	13.4499
ffffffeeeeellleeeee333ffffffc	chr3:56106080-56106332(+)$1	252	95	124	16.0744
%eeeeeeeeeellleeeee333eeeeecc	chr10:22221971-22222213(+)$1	242	144	173	19.5816
%eeeeeeeeeellleeeee333eeeeecc	chr9:77414752-77414956(+)$1	204	102	131	19.5816
cc####eeeeellleeeee4444ccc:dd	chr11:46783855-46784060(-)$1	205	124	153	14.9891
ccc!!eeeeemmmmeeeee]ccc22gggg	chr17:70660034-70660285(-)$1	251	10	39	15.0840
a[bb[eeeeemmmmeeeee]bba]fffff	chr2:86362931-86363138(+)$1	207	77	106	13.6064
cc"""eeeeemmmmeeeee]ccc]dddd]	chr11:46783938-46784146(-)$1	208	128	157	15.4488
deeeeeeeeeellleeeee333eeeee:C	chr5:113589159-113589406(+)$1	247	85	114	17.4154
ccc!!eeeeemmmmeeeee]ccc333fff	chr7:111928612-111928819(+)$1	207	81	110	15.1155
ccc!!eeeeemmmmeeeee]ccc333fff	chr7:111928577-111928780(+)$1	203	116	145	15.1155
"""eeeeeooooooeeeee4444bbdddd	chr22:37451049-37451293(-)$1	244	47	76	14.7356
a[bb[eeeeemmmmeeeee]bba]fffff	chr2:86362944-86363157(+)$1	213	64	93	13.6064
%eeeeeeeeeellleeeee333eeeeecc	chr9:77414743-77414948(+)$1	205	111	140	19.5816
geeeeeeeeeellleeeee333eeeee:c	chr2:47586788-47587009(-)$1	221	133	162	18.4706
%eeeeeeeeeellleeeee333eeeeecc	chr9:77414748-77414952(+)$1	204	106	135	19.5816
fffeeeeeooooooeeeeeccc[ffffff	chr17:7480111-7480325(+)$1	214	119	148	12.5530
eeeeeeeeeooooooeeeee22eeeeecc	chr4:6998951-6999155(+)$1	204	12	41	15.3105
eeee"""cccooooooccc333eeeeeee	chr16:71792220-71792440(-)$1	220	85	114	10.7044
!!ddddeeeeellleeeee333dddd22c	chr2:207086010-207086219(+)$1	209	72	101	16.5887
%eeeeeeeeeellleeeee333eeeeecc	chr11:73543606-73543830(-)$1	224	139	168	19.5816
%eeeeeeeeeellleeeee333eeeeecc	chr9:77414736-77414943(+)$1	207	118	147	19.5816
%eeeeeeeeeellleeeee333eeeeecc	chr10:22222013-22222221(+)$1	208	102	131	19.5816
[dddd[eeeeellleeeee]dddd]ccc:	chr1:173760903-173761123(+)$1	220	48	77	13.7265
%eeeeeeeeeellleeeee333eeeeecc	chr6:52860420-52860623(+)$1	203	41	70	19.5816
%eeeeeeeeeellleeeee333eeeeecc	chr10:22222036-22222265(+)$1	229	79	108	19.5816
"""eeeeeooooooeeeee4444bbdddd	chr22:37451104-37451328(-)$1	224	82	111	14.7356
###eeeeeooooooeeeee333cccdddd	chr10:25197587-25197843(-)$1	256	224	253	15.8840
%eeeeeeeeeellleeeee333eeeeecc	chr15:77028928-77029193(+)$1	265	97	126	19.5816
%eeeeeeeeeellleeeee333eeeeecc	chr11:73543630-73543836(-)$1	206	145	174	19.5816
cc"""eeeeemmmmeeeee]ccc]dddd]	chr11:46783860-46784064(-)$1	204	46	75	15.4488

#otherMatches

#Seq PSSM
cggcugugacaucugucaccccauugauc	chr9:25089000-25089250(-)$1	250	117	146	14.2531
cgccaggguugauucagcugaucuggcug	chr9:77414756-77414960(+)$1	204	98	127	19.5816
CCAUGGUAUCAGGUGAUACAGGCACCACU	chr11:46783843-46784055(-)$1	212	37	66	15.4488
uggcugugacaucugucaccccauugauc	chr9:77414710-77414930(+)$1	220	116	145	15.0840
gaagggggcgaccacccccgauagaggag	chr22:37451098-37451304(-)$1	206	58	87	14.7356
cgccaggguugacacggcugaucuggcug	chr4:168584037-168584298(+)$1	261	143	172	17.0535
cgccaggguugauucagcugaucuggcgg	chr22:42961068-42961312(-)$1	244	20	49	18.3133
uggcugugacaucugucacuccauugauc	chr14:50535190-50535451(+)$1	261	110	139	15.0840
gaggcgcugcauguggcagucugccuuuA	chr16:67355461-67355717(-)$1	256	125	154	13.8162
ugccaggguugauucagcugaucuggaug	chr2:207086019-207086242(+)$1	223	63	92	16.5887
CCCCGUGCCCCCCAGGGGCUAUGGGCGAC	chr19:48259009-48259214(+)$1	205	126	155	15.0574
CCAUGGUAUCAGGUGAUACAGGCACCACU	chr11:46783903-46784107(-)$1	204	89	118	15.4488
gaggcgcugcauguggcagucugccuuuc	chr6:52860603-52860808(+)$1	205	113	142	14.6940
CCAUGGUAUCAGGUGAUACAGGCACCACU	chr11:46783899-46784103(-)$1	204	85	114	15.4488
uggcugugacaucugucaccccauugauc	chr13:99857968-99858185(+)$1	217	9	38	15.0840
UCAGAUGCCCACGUGGGCACUGCUGAGAA	chr19:50000942-50001149(+)$1	207	64	93	18.0332
ccaggguugguucggcugaucuggcuggc	chr5:6848434-6848670(-)$1	236	141	170	13.4499
ggccaggguugauucggcugaucuggcug	chr3:56106080-56106332(+)$1	252	95	124	16.0744
cgccaggguugauucagcugaucuggcug	chr10:22221971-22222213(+)$1	242	144	173	19.5816
cgccaggguugauucagcugaucuggcug	chr9:77414752-77414956(+)$1	204	102	131	19.5816
CAUCUCUUCCUUUCAGGAGCACUUGCUGA	chr11:46783855-46784060(-)$1	205	124	153	14.9891
uggcugugacaucugucacuccauugauu	chr17:70660034-70660285(-)$1	251	10	39	15.0840
GCGCAGGGGUACGGACCUCAGCUGAGUCA	chr2:86362931-86363138(+)$1	207	77	106	13.6064
CCAUGGUAUCAGGUGAUACAGGCACCACU	chr11:46783938-46784146(-)$1	208	128	157	15.4488
ugccaggguugauucagcugaucuggcug	chr5:113589159-113589406(+)$1	247	85	114	17.4154
uggcugugacaucugucaccccauuaauc	chr7:111928612-111928819(+)$1	207	81	110	15.1155
uggcugugacaucugucaccccauuaauc	chr7:111928577-111928780(+)$1	203	116	145	15.1155
gaagggggcgaccacccccgauagaggag	chr22:37451049-37451293(-)$1	244	47	76	14.7356
GCGCAGGGGUACGGACCUCAGCUGAGUCA	chr2:86362944-86363157(+)$1	213	64	93	13.6064
cgccaggguugauucagcugaucuggcug	chr9:77414743-77414948(+)$1	205	111	140	19.5816
cgccaggguugauucagcugaucuggcug	chr2:47586788-47587009(-)$1	221	133	162	18.4706
cgccaggguugauucagcugaucuggcug	chr9:77414748-77414952(+)$1	204	106	135	19.5816
AAGGUCCUGGGCAAAGGAUCAGUCUUUGU	chr17:7480111-7480325(+)$1	214	119	148	12.5530
gcuccauucguaggagaauguagagucgu	chr4:6998951-6999155(+)$1	204	12	41	15.3105
CGGCUAAGUGUCUUGUCACAAUGCUGACA	chr16:71792220-71792440(-)$1	220	85	114	10.7044
ugccaggguugauucagcugaucuggaug	chr2:207086010-207086219(+)$1	209	72	101	16.5887
ugccaggguugauucagcugaucuggcug	chr11:73543606-73543830(-)$1	224	139	168	19.5816
cgccaggguugauucagcugaucuggcug	chr9:77414736-77414943(+)$1	207	118	147	19.5816
cgccaggguugauucagcugaucuggcug	chr10:22222013-22222221(+)$1	208	102	131	19.5816
uucuuugaagucaagcuuccaagacucca	chr1:173760903-173761123(+)$1	220	48	77	13.7265
cgccaggguugauucggcugaucuggcug	chr6:52860420-52860623(+)$1	203	41	70	19.5816
cgccaggguugauucagcugaucuggcug	chr10:22222036-22222265(+)$1	229	79	108	19.5816
gaagggggcgaccacccccgauagaggag	chr22:37451104-37451328(-)$1	224	82	111	14.7356
caaagcugcgugcucgguugaagaggaca	chr10:25197587-25197843(-)$1	256	224	253	15.8840
cgccaggguugauucagcugaucuggcug	chr15:77028928-77029193(+)$1	265	97	126	19.5816
ugccaggguugauucagcugaucuggcug	chr11:73543630-73543836(-)$1	206	145	174	19.5816
CCAUGGUAUCAGGUGAUACAGGCACCACU	chr11:46783860-46784064(-)$1	204	46	75	15.4488

#DB
.((..(((((....))))).))...))))	chr9:25089000-25089250(-)$1	1	117	146	14.2531
.((((((((((...)))))...)))))))	chr9:77414756-77414960(+)$1	1	98	127	19.5816
((...(((((....))))).))).)))).	chr11:46783843-46784055(-)$1	1	37	66	15.4488
(((..(((((....))))).)))..))))	chr9:77414710-77414930(+)$1	1	116	145	15.0840
...(((((......)))))....))))))	chr22:37451098-37451304(-)$1	1	58	87	14.7356
.((((((((((...)))))...)))))))	chr4:168584037-168584298(+)$1	1	143	172	17.0535
(((((((((((...)))))...)))))((	chr22:42961068-42961312(-)$1	1	20	49	18.3133
(((..(((((....))))).)))..))))	chr14:50535190-50535451(+)$1	1	110	139	15.0840
((((((((((.....)))))..)))))..	chr16:67355461-67355717(-)$1	1	125	154	13.8162
..(((((((((...)))))...))))..)	chr2:207086019-207086242(+)$1	1	63	92	16.5887
(((((((((((...))))).))))).)).	chr19:48259009-48259214(+)$1	1	126	155	15.0574
((...(((((....))))).))).)))).	chr11:46783903-46784107(-)$1	1	89	118	15.4488
((((((((((.....)))))..)))))..	chr6:52860603-52860808(+)$1	1	113	142	14.6940
((...(((((....))))).))).)))).	chr11:46783899-46784103(-)$1	1	85	114	15.4488
(((..(((((....))))).)))..))))	chr13:99857968-99858185(+)$1	1	9	38	15.0840
((((.(((((....)))))...)))))..	chr19:50000942-50001149(+)$1	1	64	93	18.0332
(((((.(((((...)))))))))))))).	chr5:6848434-6848670(-)$1	1	141	170	13.4499
(((((((((((...)))))...)))))))	chr3:56106080-56106332(+)$1	1	95	124	16.0744
.((((((((((...)))))...)))))))	chr10:22221971-22222213(+)$1	1	144	173	19.5816
.((((((((((...)))))...)))))))	chr9:77414752-77414956(+)$1	1	102	131	19.5816
((....(((((...)))))....))).((	chr11:46783855-46784060(-)$1	1	124	153	14.9891
(((..(((((....))))).)))..))))	chr17:70660034-70660285(-)$1	1	10	39	15.0840
(.((.(((((....))))).))).)))))	chr2:86362931-86363138(+)$1	1	77	106	13.6064
((...(((((....))))).))).)))).	chr11:46783938-46784146(-)$1	1	128	157	15.4488
)((((((((((...)))))...))))).)	chr5:113589159-113589406(+)$1	1	85	114	17.4154
(((..(((((....))))).)))...)))	chr7:111928612-111928819(+)$1	1	81	110	15.1155
(((..(((((....))))).)))...)))	chr7:111928577-111928780(+)$1	1	116	145	15.1155
...(((((......)))))....))))))	chr22:37451049-37451293(-)$1	1	47	76	14.7356
(.((.(((((....))))).))).)))))	chr2:86362944-86363157(+)$1	1	64	93	13.6064
.((((((((((...)))))...)))))))	chr9:77414743-77414948(+)$1	1	111	140	19.5816
)((((((((((...)))))...))))).(	chr2:47586788-47587009(-)$1	1	133	162	18.4706
.((((((((((...)))))...)))))))	chr9:77414748-77414952(+)$1	1	106	135	19.5816
)))(((((......)))))(((.((((((	chr17:7480111-7480325(+)$1	1	119	148	12.5530
(((((((((......)))))..)))))))	chr4:6998951-6999155(+)$1	1	12	41	15.3105
((((...(((......)))...)))))))	chr16:71792220-71792440(-)$1	1	85	114	10.7044
..(((((((((...)))))...))))..)	chr2:207086010-207086219(+)$1	1	72	101	16.5887
.((((((((((...)))))...)))))))	chr11:73543606-73543830(-)$1	1	139	168	19.5816
.((((((((((...)))))...)))))))	chr9:77414736-77414943(+)$1	1	118	147	19.5816
.((((((((((...)))))...)))))))	chr10:22222013-22222221(+)$1	1	102	131	19.5816
.((((.(((((...))))).)))).))).	chr1:173760903-173761123(+)$1	1	48	77	13.7265
.((((((((((...)))))...)))))))	chr6:52860420-52860623(+)$1	1	41	70	19.5816
.((((((((((...)))))...)))))))	chr10:22222036-22222265(+)$1	1	79	108	19.5816
...(((((......)))))....))))))	chr22:37451104-37451328(-)$1	1	82	111	14.7356
...(((((......)))))...)))))))	chr10:25197587-25197843(-)$1	1	224	253	15.8840
.((((((((((...)))))...)))))))	chr15:77028928-77029193(+)$1	1	97	126	19.5816
.((((((((((...)))))...)))))))	chr11:73543630-73543836(-)$1	1	145	174	19.5816
((...(((((....))))).))).)))).	chr11:46783860-46784064(-)$1	1	46	75	15.4488

#PSSM
% : 0.25	c : 0.25	e : 0.10	" : 0.06	f : 0.06	[ : 0.04	! : 0.04	a : 0.04	: : 0.02	F : 0.02	b : 0.02	d : 0.02	g : 0.02	# : 0.02	
e : 0.46	c : 0.25	" : 0.06	f : 0.06	! : 0.04	[ : 0.04	b : 0.02	d : 0.02	# : 0.02	
e : 0.46	" : 0.17	c : 0.12	b : 0.06	d : 0.06	f : 0.06	# : 0.04	
e : 0.57	! : 0.14	" : 0.10	d : 0.06	f : 0.04	b : 0.04	# : 0.02	
e : 0.53	! : 0.14	" : 0.12	d : 0.06	[ : 0.06	f : 0.04	# : 0.02	
e : 0.85	d : 0.04	[ : 0.04	f : 0.02	# : 0.02	" : 0.02	
e : 0.97	" : 0.02	
e : 0.97	c : 0.02	
e : 0.87	o : 0.10	c : 0.02	
e : 0.85	o : 0.12	c : 0.02	
e : 0.48	m : 0.31	o : 0.14	n : 0.04	
l : 0.48	m : 0.31	o : 0.14	n : 0.04	
l : 0.48	m : 0.31	o : 0.14	n : 0.04	
l : 0.48	m : 0.31	o : 0.14	n : 0.04	
e : 0.91	n : 0.04	o : 0.04	
e : 0.97	o : 0.02	
e : 0.97	c : 0.02	
e : 0.97	c : 0.02	
e : 0.97	c : 0.02	
3 : 0.46	] : 0.34	4 : 0.08	e : 0.06	f : 0.02	c : 0.02	
3 : 0.46	c : 0.25	4 : 0.08	b : 0.06	2 : 0.06	e : 0.02	f : 0.02	d : 0.02	
3 : 0.46	c : 0.25	4 : 0.08	b : 0.06	2 : 0.06	e : 0.02	f : 0.02	d : 0.02	
e : 0.46	c : 0.25	4 : 0.08	d : 0.06	f : 0.04	a : 0.04	3 : 0.02	[ : 0.02	
e : 0.46	] : 0.14	2 : 0.08	3 : 0.06	b : 0.06	d : 0.06	f : 0.06	c : 0.04	
e : 0.46	d : 0.14	f : 0.10	2 : 0.08	3 : 0.06	b : 0.06	c : 0.04	] : 0.02	
e : 0.44	d : 0.23	g : 0.10	f : 0.08	c : 0.06	3 : 0.04	] : 0.02	
e : 0.44	d : 0.19	f : 0.12	g : 0.10	2 : 0.04	c : 0.04	b : 0.02	: : 0.02	
c : 0.31	d : 0.21	f : 0.12	g : 0.10	b : 0.04	2 : 0.04	3 : 0.04	: : 0.04	B : 0.02	0 : 0.02	e : 0.02	
c : 0.36	g : 0.10	] : 0.10	d : 0.10	f : 0.10	3 : 0.06	: : 0.04	B : 0.02	b : 0.02	0 : 0.02	C : 0.02	e : 0.02	

#score	767.1883235588771
#seq	47
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_UTR_m2_run2.txt

#BEAR
bbccceeeeeooooooeeeee]ccc]b	chr12:25361984-25362233(-)$1	249	197	224	10.3302
c"""ffffffooooooffffffcccff	chr1:25568668-25568964(-)$1	296	140	167	11.3284
eeeee!!cccooooooccc333eeeee	chr1:203276584-203276885(+)$1	301	75	102	11.9242
============mmmm===========	chr19:18390666-18390885(-)$1	219	11	38	13.9657
==========mmmm=============	chr7:100278803-100279081(-)$1	278	87	114	13.8399
[gggggggbboooooobb]ggggggg]	chr22:36677295-36677528(-)$1	233	196	223	14.2120
f"""ffffffooooooffffff]ffff	chr1:29474185-29474471(-)$1	286	118	145	11.1470
==========ppppppp==========	chr14:70238099-70238357(+)$1	258	143	170	11.6968
iiiiiii[bboooooobb]iiiiiiii	chr8:101715240-101715492(-)$1	252	131	158	15.8469
==========oooooo===========	chr7:120936967-120937217(+)$1	250	85	112	17.6020
==========oooooo===========	chr15:77241869-77242152(+)$1	283	223	250	17.6020
==========qqqqqqqq=========	chr6:37142966-37143259(+)$1	293	174	201	12.3768
============mmmm===========	chr6:43753844-43754101(+)$1	257	40	67	13.9657
===========nnnnn===========	chr19:1258684-1258928(+)$1	244	63	90	14.2669
!!dddd!!bboooooobb]dddd22gg	chr1:145442467-145442716(+)$1	249	29	56	11.4855
[eeeee!!bboooooobb]eeeee]ee	chr4:174252911-174253218(-)$1	307	109	136	11.9782
####ffffffooooooffffff4444g	chr8:101734057-101734282(-)$1	225	100	127	11.6469
"==========mmmm==========bb	chr4:174252814-174253092(-)$1	278	83	110	13.0273
dddd"""cccoooooocccdddd22ac	chr5:140895330-140895584(-)$1	254	175	202	10.7437
c[bb[ccc[aooooooa]ccc]bbccc	chr11:76261279-76261569(+)$1	290	181	208	11.6215
Hccc[cccbboooooobb]ccc]ccc:	chr21:44513021-44513263(-)$1	242	165	192	10.9153
==========oooooo===========	chr8:128753520-128753767(+)$1	247	22	49	17.6020
ggggggg[aooooooa]ggggggg22i	chr19:33087836-33088103(-)$1	267	179	206	12.5241
hhhhhhhcccooooooccc333hhhhh	chr11:47491731-47491997(-)$1	266	173	200	10.9676
ccc!!iiiiiiiiillliiiiiiiiic	chr11:46765052-46765303(-)$1	251	222	249	10.8935
[eeeee!!bboooooobb]eeeee]ee	chr4:174253018-174253271(-)$1	253	162	189	11.9782
iii####cccooooooccc333iiiii	chr14:70238190-70238477(+)$1	287	164	191	14.4456
==========qqqqqqqq=========	chr3:128338890-128339159(-)$1	269	85	112	12.3768
==========oooooo===========	chr10:74035222-74035599(+)$1	377	295	322	17.6020
==========mmmm=============	chr4:174252775-174253014(-)$1	239	6	33	13.8399
iiiiiiiiimmmmiiiiiiiii=====	chr8:23429727-23430007(+)$1	280	155	182	11.4322
ff[iiiiiiiiillliiiiiiiiifff	chr14:69254688-69254951(-)$1	263	82	109	11.4472
ee####ddddoooooodddd4444eee	chr17:47128505-47128752(+)$1	247	33	60	10.4706
==========oooooo===========	chr15:77242025-77242307(+)$1	282	67	94	17.6020
iiiiiiiiirrrrrrrrriiiiiiiii	chr3:180702226-180702520(-)$1	294	247	274	12.6244
=======================!!hh	chr16:56462981-56463229(-)$1	248	122	149	11.5733
===========oooooo==========	chr4:48499963-48500225(-)$1	262	222	249	16.6963
!!ccc"""bboooooobb]ccc22iii	chr1:182352941-182353174(-)$1	233	146	173	13.3743
""ccc"""bboooooobb4444ccc]e	chr1:32508427-32508681(+)$1	254	209	236	13.0833
:gggggggbboooooobb]gggggggD	chr22:36677278-36677495(-)$1	217	163	190	11.6317
gggggg[cccoooooocccggggggg2	chr3:9519599-9519840(+)$1	241	144	171	13.5379
ddddffffffooooooffffff4444d	chr17:56050985-56051202(-)$1	217	11	38	10.5089
=iiiiiiiiiqqqqqqqqiiiiiiiii	chr5:126172502-126172792(+)$1	290	92	119	11.3114
==========rrrrrrrrr========	chr17:46698476-46698707(-)$1	231	4	31	13.5852
ee[cccddddoooooodddd333ccce	chr11:85989505-85989841(+)$1	336	121	148	10.9218
eeeeiiiiiiiiillliiiiiiiii33	chr7:127231546-127231814(+)$1	268	151	178	11.4890
[ggggggg[bbnnnnnbb]gggggggh	chr1:145442410-145442667(+)$1	257	132	159	10.2616
"iiiiiiiiiooooooiiiiiiiiidd	chr1:53692502-53692756(-)$1	254	144	171	15.6220
b[==========lll==========]b	chr3:51435663-51435934(-)$1	271	179	206	13.7331
[iiiiiiiiiqqqqqqqqiiiiiiiii	chr6:17615429-17615677(-)$1	248	167	194	11.3013
!ffffff[bboooooobb22ffffff2	chr1:150237738-150238028(-)$1	290	21	48	10.9241
dd[ffffffaooooooa]ffffff]dd	chr6:26545668-26545956(+)$1	288	157	184	10.8272

#otherMatches

#Seq PSSM
CUCCUAAUAGCUUUUCCUGUUAAGGCA	chr12:25361984-25362233(-)$1	249	197	224	10.3302
UAUGUAAAAAUGAAAUUUUUUAGACAC	chr1:25568668-25568964(-)$1	296	140	167	11.3284
GAAGAGCuauuuauauauauuauuuuu	chr1:203276584-203276885(+)$1	301	75	102	11.9242
uuuuuuuuuuucuuuGGAAGAGAGAAG	chr19:18390666-18390885(-)$1	219	11	38	13.9657
UUUUUUUUUUUUUUAAGAAAAAAAGAU	chr7:100278803-100279081(-)$1	278	87	114	13.8399
UGUGCUACGAGCCGUGUCUGUAGCAUU	chr22:36677295-36677528(-)$1	233	196	223	14.2120
gaaaagaauuuuuuuuaauuuuauuuu	chr1:29474185-29474471(-)$1	286	118	145	11.1470
AUACUUGCUAAAAAUUCUGGUAAGUAU	chr14:70238099-70238357(+)$1	258	143	170	11.6968
AAAAUAUAAAAACAAAUUAAUGUUUUA	chr8:101715240-101715492(-)$1	252	131	158	15.8469
uuuuuauauauauuuuuauauGAAGAU	chr7:120936967-120937217(+)$1	250	85	112	17.6020
GGGUUUUAUUGUAUGAAAUAGAACUUU	chr15:77241869-77242152(+)$1	283	223	250	17.6020
AUAAAAGAGAUCUUAUUUUUUUUUUUA	chr6:37142966-37143259(+)$1	293	174	201	12.3768
uauauauauauauguuuauguauauau	chr6:43753844-43754101(+)$1	257	40	67	13.9657
GUAGAGCUCAAGGAUUUUGGGUUUUGU	chr19:1258684-1258928(+)$1	244	63	90	14.2669
GUUGGUUUCAUGUUUUUGUAUUAUGUA	chr1:145442467-145442716(+)$1	249	29	56	11.4855
GUAUAGCUGAUAAGAUUCUCUGUAGAG	chr4:174252911-174253218(-)$1	307	109	136	11.9782
CCGCGUCUCCCCCGCCGGAGACUUUUA	chr8:101734057-101734282(-)$1	225	100	127	11.6469
UGUUGAAUGUUCCUAAAUAUUUAAUGG	chr4:174252814-174253092(-)$1	278	83	110	13.0273
UGGGAUUUCUUCUCACAGGCCCAAUCC	chr5:140895330-140895584(-)$1	254	175	202	10.7437
AUCAUGGCCGGUGAAACAGUUUUGUCU	chr11:76261279-76261569(+)$1	290	181	208	11.6215
GGUUUCUGAAUAAAAUUUGUAGUGAUA	chr21:44513021-44513263(-)$1	242	165	192	10.9153
AUAGUACCUAGUAUUAUAGGUACUAUA	chr8:128753520-128753767(+)$1	247	22	49	17.6020
UUAUGAUUCUUGACUGUGUCAUGGUAU	chr19:33087836-33088103(-)$1	267	179	206	12.5241
GUUGGGGAGGCGCUGUUCUGAAUCCCA	chr11:47491731-47491997(-)$1	266	173	200	10.9676
CCAAGAUGCUCCAUAUCAUGGAGUGUU	chr11:46765052-46765303(-)$1	251	222	249	10.8935
GUAUAGCUGAUAAGAUUCUCUGUAGAG	chr4:174253018-174253271(-)$1	253	162	189	11.9782
AAAACUAAUUGUAUUAAAUGUCUUUUG	chr14:70238190-70238477(+)$1	287	164	191	14.4456
UUCuuuuuuuuuuuuuuuaaaaaaaga	chr3:128338890-128339159(-)$1	269	85	112	12.3768
GUCAGGGAUCACUUGGGAUCUUUGACA	chr10:74035222-74035599(+)$1	377	295	322	17.6020
GUUGAAUGUUCCUAAAUAUUUAAUGGU	chr4:174252775-174253014(-)$1	239	6	33	13.8399
ACGGCUGGGACUCUCCAGCUGUUUUUG	chr8:23429727-23430007(+)$1	280	155	182	11.4322
uuauuuuauuuuaaaaaaaugaaaaau	chr14:69254688-69254951(-)$1	263	82	109	11.4472
CUGAUAUUUUAUAUAAAAAAGAAAAGC	chr17:47128505-47128752(+)$1	247	33	60	10.4706
GGGUUUUAUUGUAUGAAAUAGAACUUU	chr15:77242025-77242307(+)$1	282	67	94	17.6020
AUUUUAAAUCAGAUUAUAGUUUAGAAU	chr3:180702226-180702520(-)$1	294	247	274	12.6244
UAAAGUGAUCACUGUUCUUUUUUUAUU	chr16:56462981-56463229(-)$1	248	122	149	11.5733
ACUGGGCUCUGUGAUUCCAGAGUUUAG	chr4:48499963-48500225(-)$1	262	222	249	16.6963
UUGCUUGUGGGACUAGCCUGGCUUGGG	chr1:182352941-182353174(-)$1	233	146	173	13.3743
AGGCAUCCCGUAAAGUUGUAGUUGCAG	chr1:32508427-32508681(+)$1	254	209	236	13.0833
UGUGCUACGAGCCGUGUCUGUAGCAUU	chr22:36677278-36677495(-)$1	217	163	190	11.6317
AGUGUUUACACCUUGCUGUAACAUUUG	chr3:9519599-9519840(+)$1	241	144	171	13.5379
CUGAUAUUUGGAGAUGUAAAUAUUGCU	chr17:56050985-56051202(-)$1	217	11	38	10.5089
GGUGGAGGGAGGGAAGGGUUUCUCUAU	chr5:126172502-126172792(+)$1	290	92	119	11.3114
GUCGUGAAAUUGUGCUUGUGUUUCGUG	chr17:46698476-46698707(-)$1	231	4	31	13.5852
GUAUCUUGCUAGUAAGGGCACGUAGAG	chr11:85989505-85989841(+)$1	336	121	148	10.9218
CGGGUGGUGCUAUAAUGUGGCACUGGA	chr7:127231546-127231814(+)$1	268	151	178	11.4890
CUAUAUUUUGUACUUAACCAGAUAUAU	chr1:145442410-145442667(+)$1	257	132	159	10.2616
UGUGAUAAAAUCCAAUUUUUAUUAUUU	chr1:53692502-53692756(-)$1	254	144	171	15.6220
CUUCAUUUUCUUUGGAAGAAAAUGAUG	chr3:51435663-51435934(-)$1	271	179	206	13.7331
AAAUCUUUAAAAAAAAAAUUGGGGAUU	chr6:17615429-17615677(-)$1	248	167	194	11.3013
ACUCCAGAGCUGCAGUGCCACUGGAGG	chr1:150237738-150238028(-)$1	290	21	48	10.9241
CACAGGACACUUCCUUGUUGUCUUUUG	chr6:26545668-26545956(+)$1	288	157	184	10.8272

#DB
((((((((((......))))).))).)	chr12:25361984-25362233(-)$1	1	197	224	10.3302
(...((((((......)))))))))))	chr1:25568668-25568964(-)$1	1	140	167	11.3284
(((((..(((......)))...)))))	chr1:203276584-203276885(+)$1	1	75	102	11.9242
((((((((((((....)))))))))))	chr19:18390666-18390885(-)$1	1	11	38	13.9657
((((((((((....)))))))))))))	chr7:100278803-100279081(-)$1	1	87	114	13.8399
.(((((((((......)).))))))).	chr22:36677295-36677528(-)$1	1	196	223	14.2120
(...((((((......)))))).))))	chr1:29474185-29474471(-)$1	1	118	145	11.1470
((((((((((.......))))))))))	chr14:70238099-70238357(+)$1	1	143	170	11.6968
(((((((.((......)).))))))))	chr8:101715240-101715492(-)$1	1	131	158	15.8469
((((((((((......)))))))))))	chr7:120936967-120937217(+)$1	1	85	112	17.6020
((((((((((......)))))))))))	chr15:77241869-77242152(+)$1	1	223	250	17.6020
((((((((((........)))))))))	chr6:37142966-37143259(+)$1	1	174	201	12.3768
((((((((((((....)))))))))))	chr6:43753844-43754101(+)$1	1	40	67	13.9657
(((((((((((.....)))))))))))	chr19:1258684-1258928(+)$1	1	63	90	14.2669
..((((..((......)).))))..))	chr1:145442467-145442716(+)$1	1	29	56	11.4855
.(((((..((......)).))))).))	chr4:174252911-174253218(-)$1	1	109	136	11.9782
....((((((......))))))....)	chr8:101734057-101734282(-)$1	1	100	127	11.6469
.((((((((((....))))))))))))	chr4:174252814-174253092(-)$1	1	83	110	13.0273
((((...(((......)))))))..))	chr5:140895330-140895584(-)$1	1	175	202	10.7437
(.((.(((.(......).))).)))))	chr11:76261279-76261569(+)$1	1	181	208	11.6215
)(((.(((((......)).))).))).	chr21:44513021-44513263(-)$1	1	165	192	10.9153
((((((((((......)))))))))))	chr8:128753520-128753767(+)$1	1	22	49	17.6020
(((((((.(......).)))))))..)	chr19:33087836-33088103(-)$1	1	179	206	12.5241
((((((((((......)))...)))))	chr11:47491731-47491997(-)$1	1	173	200	10.9676
(((..(((((((((...))))))))))	chr11:46765052-46765303(-)$1	1	222	249	10.8935
.(((((..((......)).))))).))	chr4:174253018-174253271(-)$1	1	162	189	11.9782
(((....(((......)))...)))))	chr14:70238190-70238477(+)$1	1	164	191	14.4456
((((((((((........)))))))))	chr3:128338890-128339159(-)$1	1	85	112	12.3768
((((((((((......)))))))))))	chr10:74035222-74035599(+)$1	1	295	322	17.6020
((((((((((....))))))))))(((	chr4:174252775-174253014(-)$1	1	6	33	13.8399
(((((((((....)))))))))(((((	chr8:23429727-23430007(+)$1	1	155	182	11.4322
((.(((((((((...))))))))))))	chr14:69254688-69254951(-)$1	1	82	109	11.4472
((....((((......))))....)))	chr17:47128505-47128752(+)$1	1	33	60	10.4706
((((((((((......)))))))))))	chr15:77242025-77242307(+)$1	1	67	94	17.6020
(((((((((.........)))))))))	chr3:180702226-180702520(-)$1	1	247	274	12.6244
(((((((((((((((((((((((..((	chr16:56462981-56463229(-)$1	1	122	149	11.5733
)((((((((((......))))))))))	chr4:48499963-48500225(-)$1	1	222	249	16.6963
..(((...((......)).)))..)))	chr1:182352941-182353174(-)$1	1	146	173	13.3743
..(((...((......))....))).)	chr1:32508427-32508681(+)$1	1	209	236	13.0833
.(((((((((......)).))))))))	chr22:36677278-36677495(-)$1	1	163	190	11.6317
((((((.(((......)))))))))).	chr3:9519599-9519840(+)$1	1	144	171	13.5379
((((((((((......))))))....)	chr17:56050985-56051202(-)$1	1	11	38	10.5089
)(((((((((........)))))))))	chr5:126172502-126172792(+)$1	1	92	119	11.3114
((((((((((.........))))))))	chr17:46698476-46698707(-)$1	1	4	31	13.5852
((.(((((((......))))...))))	chr11:85989505-85989841(+)$1	1	121	148	10.9218
(((((((((((((...)))))))))..	chr7:127231546-127231814(+)$1	1	151	178	11.4890
.(((((((.((.....)).))))))))	chr1:145442410-145442667(+)$1	1	132	159	10.2616
.(((((((((......)))))))))))	chr1:53692502-53692756(-)$1	1	144	171	15.6220
(.((((((((((...)))))))))).)	chr3:51435663-51435934(-)$1	1	179	206	13.7331
.(((((((((........)))))))))	chr6:17615429-17615677(-)$1	1	167	194	11.3013
.((((((.((......))..)))))).	chr1:150237738-150238028(-)$1	1	21	48	10.9241
((.(((((((......).)))))).))	chr6:26545668-26545956(+)$1	1	157	184	10.8272

#PSSM
= : 0.32	[ : 0.09	e : 0.07	i : 0.07	c : 0.05	! : 0.05	" : 0.05	d : 0.05	b : 0.03	f : 0.03	g : 0.03	# : 0.01	H : 0.01	h : 0.01	: : 0.01	
= : 0.32	i : 0.13	e : 0.11	g : 0.09	" : 0.05	d : 0.05	! : 0.03	[ : 0.03	c : 0.03	f : 0.03	b : 0.01	# : 0.01	h : 0.01	
= : 0.34	i : 0.13	c : 0.09	g : 0.09	e : 0.07	d : 0.05	[ : 0.05	" : 0.03	# : 0.03	b : 0.01	h : 0.01	f : 0.01	
= : 0.34	i : 0.13	c : 0.09	g : 0.09	e : 0.07	d : 0.05	# : 0.05	" : 0.03	f : 0.03	b : 0.01	h : 0.01	! : 0.01	
= : 0.34	i : 0.15	f : 0.11	g : 0.09	c : 0.07	e : 0.05	[ : 0.03	# : 0.03	d : 0.01	" : 0.01	h : 0.01	! : 0.01	
= : 0.34	i : 0.17	f : 0.11	g : 0.09	e : 0.05	" : 0.05	c : 0.05	# : 0.03	! : 0.01	d : 0.01	h : 0.01	
= : 0.34	i : 0.17	f : 0.11	! : 0.07	g : 0.07	" : 0.05	c : 0.03	d : 0.03	e : 0.01	h : 0.01	# : 0.01	[ : 0.01	
= : 0.34	i : 0.15	c : 0.13	f : 0.09	g : 0.05	[ : 0.05	! : 0.05	d : 0.03	" : 0.03	e : 0.01	
= : 0.34	b : 0.19	i : 0.15	f : 0.09	c : 0.09	[ : 0.03	d : 0.03	e : 0.01	a : 0.01	
= : 0.34	b : 0.21	i : 0.11	c : 0.09	f : 0.07	a : 0.03	d : 0.03	e : 0.01	o : 0.01	m : 0.01	r : 0.01	
o : 0.59	= : 0.13	q : 0.07	m : 0.05	i : 0.05	r : 0.03	p : 0.01	b : 0.01	
o : 0.61	= : 0.07	m : 0.07	q : 0.07	i : 0.05	n : 0.03	r : 0.03	p : 0.01	
o : 0.61	m : 0.11	q : 0.07	n : 0.03	i : 0.03	l : 0.03	r : 0.03	p : 0.01	= : 0.01	
o : 0.61	m : 0.09	q : 0.07	l : 0.05	n : 0.03	i : 0.03	r : 0.03	p : 0.01	= : 0.01	
o : 0.61	q : 0.07	l : 0.07	m : 0.05	= : 0.05	n : 0.03	r : 0.03	p : 0.01	i : 0.01	
o : 0.59	= : 0.09	q : 0.07	m : 0.03	n : 0.03	l : 0.03	i : 0.03	r : 0.03	p : 0.01	a : 0.01	
= : 0.24	b : 0.21	c : 0.09	f : 0.07	q : 0.07	i : 0.07	a : 0.03	d : 0.03	r : 0.03	e : 0.01	p : 0.01	] : 0.01	l : 0.01	o : 0.01	
= : 0.28	b : 0.21	c : 0.09	i : 0.09	f : 0.07	q : 0.07	] : 0.03	d : 0.03	r : 0.03	e : 0.01	g : 0.01	
= : 0.32	] : 0.17	i : 0.15	c : 0.11	f : 0.09	d : 0.03	e : 0.01	g : 0.01	4 : 0.01	r : 0.01	2 : 0.01	
= : 0.34	i : 0.17	f : 0.09	g : 0.09	d : 0.07	e : 0.05	3 : 0.05	c : 0.05	4 : 0.01	2 : 0.01	
= : 0.34	i : 0.17	f : 0.11	g : 0.09	3 : 0.07	e : 0.05	c : 0.05	d : 0.03	4 : 0.03	
= : 0.34	i : 0.17	f : 0.11	g : 0.09	3 : 0.07	] : 0.03	d : 0.03	e : 0.03	c : 0.03	4 : 0.03	
= : 0.36	i : 0.17	g : 0.09	c : 0.05	e : 0.05	4 : 0.05	] : 0.03	d : 0.03	f : 0.03	b : 0.01	h : 0.01	2 : 0.01	3 : 0.01	
= : 0.34	i : 0.17	c : 0.09	g : 0.09	e : 0.05	f : 0.05	2 : 0.05	4 : 0.05	b : 0.01	h : 0.01	! : 0.01	
= : 0.34	i : 0.17	c : 0.11	g : 0.07	f : 0.05	2 : 0.05	] : 0.05	e : 0.03	4 : 0.03	h : 0.01	! : 0.01	
= : 0.30	i : 0.13	g : 0.09	f : 0.07	e : 0.07	] : 0.05	c : 0.05	4 : 0.03	h : 0.03	d : 0.03	b : 0.01	a : 0.01	2 : 0.01	3 : 0.01	
= : 0.30	i : 0.13	e : 0.11	b : 0.05	f : 0.05	c : 0.05	h : 0.05	d : 0.05	g : 0.03	2 : 0.03	] : 0.01	: : 0.01	D : 0.01	3 : 0.01	

#score	667.7139921456121
#seq	52
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_CDS_m3_run2.txt

#BEAR
nnnnneeeee::GGGGGGGZZZDDDDADDDD}EEEEEC	chr14:39736596-39736844(+)$1	248	144	182	18.0687
dddllldddd::CCCACCC}DDDD}GGGGGGGJJJJJJ	chr21:46281484-46281743(-)$1	259	199	237	15.1026
nnnnnffffff::::CCC}EEEEE}FFFFFFFFFFFF:	chr7:104752939-104753209(-)$1	270	178	216	16.3406
cc]a]dddd:::FFFFFFBBDDDDYYCCCEEEEE}CCC	chr2:85769617-85769892(+)$1	275	112	150	15.8901
nnnnndddd:DDDDYYCCC~~~~DDDD}DDDDZZZA}D	chrX:41193775-41194031(+)$1	256	171	209	19.8069

#otherMatches

#Seq PSSM
GAUGAGUGUUACGUGGCCCAGGGGUCGCGGGAGCCGCC	chr14:39736596-39736844(+)$1	248	144	182	18.0687
GCUCCAGGCAGAACCGGCAGGCUGAGCUGAGGCUGAGA	chr21:46281484-46281743(-)$1	259	199	237	15.1026
AAAAAUGCCCUGGAGUCACGUGGUGUCCUGGAACUGUU	chr7:104752939-104753209(-)$1	270	178	216	16.3406
UAUGGCGGUUGGGGUGCUCAUGGAGGAGGUGCCUUUUC	chr2:85769617-85769892(+)$1	275	112	150	15.8901
UUCACGGCUGGCGCAGCCUGGAUUCCCGUCCGGAGGAC	chrX:41193775-41194031(+)$1	256	171	209	19.8069

#DB
.....)))))..)))))))...))))))))).))))))	chr14:39736596-39736844(+)$1	1	144	182	18.0687
(((...))))..))))))).)))).)))))))))))))	chr21:46281484-46281743(-)$1	1	199	237	15.1026
.....))))))....))).))))).))))))((((((.	chr7:104752939-104753209(-)$1	1	178	216	16.3406
)).).))))...))))))))))))..)))))))).)))	chr2:85769617-85769892(+)$1	1	112	150	15.8901
.....)))).))))..)))....)))).))))...).)	chrX:41193775-41194031(+)$1	1	171	209	19.8069

#PSSM
n : 0.60	d : 0.20	c : 0.20	
n : 0.60	d : 0.20	c : 0.20	
n : 0.60	d : 0.20	] : 0.20	
n : 0.60	l : 0.20	a : 0.20	
n : 0.60	l : 0.20	] : 0.20	
d : 0.40	e : 0.20	l : 0.20	f : 0.20	
d : 0.60	e : 0.20	f : 0.20	
d : 0.60	e : 0.20	f : 0.20	
d : 0.60	e : 0.20	f : 0.20	
: : 0.40	e : 0.20	d : 0.20	f : 0.20	
: : 0.60	f : 0.20	D : 0.20	
: : 0.80	D : 0.20	
G : 0.20	C : 0.20	: : 0.20	F : 0.20	D : 0.20	
G : 0.20	C : 0.20	: : 0.20	F : 0.20	D : 0.20	
G : 0.20	C : 0.20	: : 0.20	F : 0.20	Y : 0.20	
G : 0.20	A : 0.20	C : 0.20	F : 0.20	Y : 0.20	
C : 0.60	G : 0.20	F : 0.20	
C : 0.60	G : 0.20	F : 0.20	
C : 0.40	G : 0.20	} : 0.20	B : 0.20	
Z : 0.20	} : 0.20	E : 0.20	B : 0.20	~ : 0.20	
D : 0.40	Z : 0.20	E : 0.20	~ : 0.20	
D : 0.40	Z : 0.20	E : 0.20	~ : 0.20	
D : 0.60	E : 0.20	~ : 0.20	
D : 0.80	E : 0.20	
D : 0.40	} : 0.40	Y : 0.20	
D : 0.40	G : 0.20	F : 0.20	Y : 0.20	
A : 0.20	G : 0.20	F : 0.20	C : 0.20	D : 0.20	
D : 0.20	G : 0.20	F : 0.20	C : 0.20	} : 0.20	
D : 0.40	G : 0.20	F : 0.20	C : 0.20	
D : 0.40	G : 0.20	F : 0.20	E : 0.20	
D : 0.40	G : 0.20	F : 0.20	E : 0.20	
} : 0.20	G : 0.20	F : 0.20	E : 0.20	D : 0.20	
E : 0.40	J : 0.20	F : 0.20	Z : 0.20	
E : 0.40	J : 0.20	F : 0.20	Z : 0.20	
E : 0.20	J : 0.20	F : 0.20	} : 0.20	Z : 0.20	
E : 0.20	J : 0.20	F : 0.20	C : 0.20	A : 0.20	
E : 0.20	J : 0.20	F : 0.20	C : 0.20	} : 0.20	
C : 0.40	J : 0.20	: : 0.20	D : 0.20	

#score	85.20912842516003
#seq	5
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_UTR_m1_run2.txt

#BEAR
:gggggggvvvvvvvvvvvvvggggggg	chr22:29696010-29696272(+)$1	262	139	167	22.1559
##eeeeewwwwwwwwwwwwwweeeee44	chr5:149829165-149829402(-)$1	237	25	53	21.8619
beeeeeyyyyyyyyyyyyyyyyeeeee]	chr19:39331052-39331284(-)$1	232	90	118	22.1506
[gggggggvvvvvvvvvvvvvggggggg	chr12:56559149-56559455(-)$1	306	214	242	22.8373
#gggggggvvvvvvvvvvvvvggggggg	chr22:20909121-20909378(+)$1	257	87	115	22.8823
d[ffffffwwwwwwwwwwwwwwffffff	chr16:337419-337690(-)$1	271	194	222	21.7036
#ccc!!ddddtttttttttttdddd]cc	chr1:154130026-154130265(-)$1	239	20	48	22.6618
""ffffffbbuuuuuuuuuuuubb]fff	chr2:47387788-47388042(-)$1	254	216	244	22.3089
:bbffffffuuuuuuuuuuuuffffff]	chr11:129997598-129997835(+)$1	237	168	196	21.7465
ffff[eeeeevvvvvvvvvvvvveeeee	chr11:62609013-62609225(-)$1	212	92	120	22.1620
dd!!ddddvvvvvvvvvvvvvdddd333	chr19:12841571-12841820(-)$1	249	83	111	22.4679
fffff!!cccwwwwwwwwwwwwwwccc2	chr2:95766116-95766364(-)$1	248	97	125	21.3755
::::eeeeewwwwwwwwwwwwwweeeee	chr1:43392291-43392549(-)$1	258	79	107	18.5935
bb[eeeeebbtttttttttttbb333ee	chr22:20941035-20941317(+)$1	282	61	89	22.1205
fffff[dddduuuuuuuuuuuuddddff	chr11:61081676-61082024(-)$1	348	236	264	22.7675
ffdddddddduuuuuuuuuuuudddd55	chr2:217365974-217366254(+)$1	280	64	92	21.1099
!!cccyyyyyyyyyyyyyyyycccdddd	chr17:73034917-73035259(-)$1	342	178	206	21.5117
FFFFFeeeeevvvvvvvvvvvvveeeee	chr12:56360675-56361087(+)$1	412	198	226	20.4202
fffff!!ccctttttttttttccc333f	chr11:34167588-34167912(+)$1	324	210	238	23.3055
==========ttttttttttt=======	chr1:155232667-155232924(-)$1	257	206	234	23.5079
%%%gggggggtttttttttttggggggg	chr7:99621101-99621383(+)$1	282	134	162	21.1142
::dddd[ccctttttttttttccc]ddd	chr17:7481569-7481807(+)$1	238	154	182	21.5783
cffffffwwwwwwwwwwwwwwffffff]	chr2:232577056-232577276(+)$1	220	88	116	21.3489
[eeeeeyyyyyyyyyyyyyyyyeeeeec	chr22:19486523-19486769(+)$1	246	77	105	22.0695
ddd[fffffftttttttttttffffff4	chr17:27413374-27413685(-)$1	311	48	76	21.8821
22ddddddddvvvvvvvvvvvvvdddd:	chr17:28506114-28506413(+)$1	299	124	152	19.9699
::dddd[ccctttttttttttcccdddd	chr12:30881593-30881953(-)$1	360	11	39	21.5558
iii!!eeeeeuuuuuuuuuuuueeeee]	chr8:11687677-11687967(+)$1	290	51	79	23.5830
"ccccccwwwwwwwwwwwwwwccc]ccc	chr5:176943029-176943292(-)$1	263	181	209	21.9364
=======wwwwwwwwwwwwww=======	chr17:7481050-7481292(+)$1	242	117	145	22.4514
c[bb!!ddddwwwwwwwwwwwwwwdddd	chr12:76441375-76441594(-)$1	219	133	161	20.8485
ee!!eeeeeuuuuuuuuuuuueeeeeee	chr5:891187-891478(-)$1	291	208	236	23.2005
eeeefffffftttttttttttffffff:	chr22:19950078-19950414(+)$1	336	101	129	20.8667
ffffffyyyyyyyyyyyyyyyyffffff	chr19:1010684-1010972(-)$1	288	194	222	21.6030
bb"""eeeeettttttttttteeeee33	chr12:123466217-123466527(+)$1	310	163	191	22.7728
eeebb!!cccuuuuuuuuuuuuccc22b	chr20:32441233-32441541(+)$1	308	267	295	22.3862
D::gggggggtttttttttttggggggg	chr19:5711765-5712008(-)$1	243	55	83	20.2824
f[dddd[bbuuuuuuuuuuuubb333dd	chr19:42734471-42734736(-)$1	265	27	55	22.4497
oooddddcccwwwwwwwwwwwwwwccc:	chr6:26199096-26199347(-)$1	251	83	111	19.6283
ccc!!eeeeewwwwwwwwwwwwwweeee	chr15:72499366-72499604(-)$1	238	110	138	21.4256
ffffff[ccctttttttttttccc]fff	chr7:98994252-98994459(-)$1	207	129	157	23.0606
eeee!!dddduuuuuuuuuuuudddd22	chr5:149779272-149779520(+)$1	248	179	207	22.6532
ggggggyyyyyyyyyyyyyyyygggggg	chr12:76442083-76442298(-)$1	215	10	38	22.4459
bb!!ddddyyyyyyyyyyyyyyyydddd	chr17:75315829-75316112(+)$1	283	85	113	21.6626
b[hhhhhhhhuuuuuuuuuuuuhhhhhh	chr10:103919935-103920193(+)$1	258	217	245	20.1599
b[dddd[bbvvvvvvvvvvvvvbbdddd	chr19:8547941-8548163(+)$1	222	139	167	21.9550
Fiiiiiiiiitttttttttttiiiiiii	chr1:40839510-40839829(+)$1	319	111	139	22.5410
d[a[ddddwwwwwwwwwwwwwwdddd]a	chr15:91446101-91446387(+)$1	286	196	224	22.1679
dd[cccxxxxxxxxxxxxxxxccc]ddd	chr17:37360790-37361034(+)$1	244	99	127	18.1047
=======wwwwwwwwwwwwww=======	chr4:1978149-1978495(+)$1	346	212	240	22.4514
ddd[bb[ccctttttttttttcccbbdd	chr11:61734811-61735068(-)$1	257	168	196	21.8921
b!!eeeeexxxxxxxxxxxxxxxeeeee	chr15:69072230-69072511(-)$1	281	91	119	18.8415
==========ttttttttttt=======	chr1:67878714-67879047(-)$1	333	60	88	23.5079
:bbffffffuuuuuuuuuuuuffffff]	chr11:129997560-129997798(+)$1	238	206	234	21.7465
iii"""ddddtttttttttttdddd333	chr1:70716348-70716637(+)$1	289	156	184	22.7771
c"""bbddddwwwwwwwwwwwwwwdddd	chr1:29474974-29475262(-)$1	288	179	207	20.6264
#ddddyyyyyyyyyyyyyyyydddd333	chr6:44221276-44221516(+)$1	240	126	154	21.0326

#otherMatches

#Seq PSSM
AGAUGCAGAGACCCCGCAGAGCUGCAUU	chr22:29696010-29696272(+)$1	262	139	167	22.1559
CGACCUCGCCCCGUGACCUCAGAGGUAU	chr5:149829165-149829402(-)$1	237	25	53	21.8619
CCUGGCAGCAACCCCAACAAACGCCAGA	chr19:39331052-39331284(-)$1	232	90	118	22.1506
UGGGGCCCCUCCAGGAAGUUUGGGCCCU	chr12:56559149-56559455(-)$1	306	214	242	22.8373
UUGUGUUCCCACAGAUCCUAUGAAUGCA	chr22:20909121-20909378(+)$1	257	87	115	22.8823
AAUUAUCUUUUCAAAGGUACUUGGAUAA	chr16:337419-337690(-)$1	271	194	222	21.7036
UGAAAUUUACUUCUAGUUCUUGUAACUU	chr1:154130026-154130265(-)$1	239	20	48	22.6618
CCUACUGUCAAAAAAAUAUGCAUGUAUA	chr2:47387788-47388042(-)$1	254	216	244	22.3089
AGCCUGACCAUUGGAAAAUACGGUCAGA	chr11:129997598-129997835(+)$1	237	168	196	21.7465
aucgaccugguauugcaguacuuccagg	chr11:62609013-62609225(-)$1	212	92	120	22.1620
GCGAUGUACAUAACUAUUUAAUGCAGCG	chr19:12841571-12841820(-)$1	249	83	111	22.4679
UCAUUAAGAUUUAAAAGGACGCAUAUCA	chr2:95766116-95766364(-)$1	248	97	125	21.3755
AUUACUGAUUUUGUUAUUUUUAUAUCAG	chr1:43392291-43392549(-)$1	258	79	107	18.5935
GCUUUCCUGCUUUUAUCUUCUGCCUUGG	chr22:20941035-20941317(+)$1	282	61	89	22.1205
GCAGAUCAGGUGUGUGUGUUUUUCUGUC	chr11:61081676-61082024(-)$1	348	236	264	22.7675
UUGGAAACUGAAUCUUUCUUUCCAGUAC	chr2:217365974-217366254(+)$1	280	64	92	21.1099
AUUAGACAAGAAAAAGUAUCCCUAUUGG	chr17:73034917-73035259(-)$1	342	178	206	21.5117
GAGGUGGUGGCGCUUAAGAAAAUCCGCC	chr12:56360675-56361087(+)$1	412	198	226	20.4202
CUCUCUGGCUGGACUGUUAAAAGCAACG	chr11:34167588-34167912(+)$1	324	210	238	23.3055
UUUAUAAGGAAUUUUGUACAGUCUUUGU	chr1:155232667-155232924(-)$1	257	206	234	23.5079
ACAUGUGGGGGCAGGAUUCCACCCUACA	chr7:99621101-99621383(+)$1	282	134	162	21.1142
AAGAGGACUCUUCGAGACAUUGAGACCU	chr17:7481569-7481807(+)$1	238	154	182	21.5783
CUCUCCAGGUGAGGAAGAGGAUGGAGAU	chr2:232577056-232577276(+)$1	220	88	116	21.3489
UCCACUGCCUUCUCUUCUUCCAGGUGGG	chr22:19486523-19486769(+)$1	246	77	105	22.0695
AAGCUAGCCCUCCUGCAAACUGGGCUGC	chr17:27413374-27413685(-)$1	311	48	76	21.8821
GACAUCUGCAUAUAAGAAAAAACUGCAA	chr17:28506114-28506413(+)$1	299	124	152	19.9699
AGAUACACCUAAAUCCAAAGCAGGGUAU	chr12:30881593-30881953(-)$1	360	11	39	21.5558
UCCUUAAUCUUCUUAUCUGUCUAGGUUU	chr8:11687677-11687967(+)$1	290	51	79	23.5830
GUAGCCAGGAUAGUGAGAAGGUGGACUG	chr5:176943029-176943292(-)$1	263	181	209	21.9364
ACGAGACGUGAUUAUGAGGGAGUUUCGU	chr17:7481050-7481292(+)$1	242	117	145	22.4514
AUCAUUUGACAAGCCUAUUUUCAAGUUA	chr12:76441375-76441594(-)$1	219	133	161	20.8485
GGCAAGGGUGCACUUUUAGAGACUCUCC	chr5:891187-891478(-)$1	291	208	236	23.2005
AGCCCAUCCACAACCUGCUCAUGGGUGA	chr22:19950078-19950414(+)$1	336	101	129	20.8667
GCCCGAUGACAUGAACAACAACUCGGGC	chr19:1010684-1010972(-)$1	288	194	222	21.6030
CUGGACCAGUGGCACCGAUCAGCUGGGG	chr12:123466217-123466527(+)$1	310	163	191	22.7728
GCCGCGUUGCUGCUCACUCUCUGCAUAG	chr20:32441233-32441541(+)$1	308	267	295	22.3862
CAAGCCCCGCAGGAAGUCAAAGCGGGGC	chr19:5711765-5712008(-)$1	243	55	83	20.2824
AUGAGGACCUCCUACCCCCUUGGCCCCC	chr19:42734471-42734736(-)$1	265	27	55	22.4497
GCCGCCCGCGACAACAAGAAGACCCGCA	chr6:26199096-26199347(-)$1	251	83	111	19.6283
GGGAAGCCUGUCAUCUGUGCUACUCAGG	chr15:72499366-72499604(-)$1	238	110	138	21.4256
UGCAGUCACUCUCCCUGAAUAAGUAACU	chr7:98994252-98994459(-)$1	207	129	157	23.0606
UGUUACCUUCCCUCGCUCCACAGAAGAA	chr5:149779272-149779520(+)$1	248	179	207	22.6532
GCAGGUAGAAGAAGAUAGAUUGACUUGU	chr12:76442083-76442298(-)$1	215	10	38	22.4459
GCAUCUCCAAGUGGAUAUUAAAAAGGAG	chr17:75315829-75316112(+)$1	283	85	113	21.6626
AGGGCUCCCCUGAAUCCAAUUUGGGGAG	chr10:103919935-103920193(+)$1	258	217	245	20.1599
CAAAGCAGGGAGGAGGUAGGAACCGCUU	chr19:8547941-8548163(+)$1	222	139	167	21.9550
CGGACGCCCCCGACCCGGGAAGGGGCGU	chr1:40839510-40839829(+)$1	319	111	139	22.5410
GAGGGGCCAGGAAGGGACAGGAGGCUGC	chr15:91446101-91446387(+)$1	286	196	224	22.1679
ACCAAGAAAUAAAACCUCCCACUUUGUC	chr17:37360790-37361034(+)$1	244	99	127	18.1047
AGGCCUACCACCUGUCCUGCCUGGGCCU	chr4:1978149-1978495(+)$1	346	212	240	22.4514
GCCAUGACGACCGCGUCCACCUCGCAGG	chr11:61734811-61735068(-)$1	257	168	196	21.8921
AGUGGAAUAACCUAUUUUGAAAAAUUCC	chr15:69072230-69072511(-)$1	281	91	119	18.8415
AGAACUGAGAACUGUGGUUAAUUUUGGU	chr1:67878714-67879047(-)$1	333	60	88	23.5079
AGCCUGACCAUUGGAAAAUACGGUCAGA	chr11:129997560-129997798(+)$1	238	206	234	21.7465
AGUCCAACUGUAUACCUGCAUCAGUGUC	chr1:70716348-70716637(+)$1	289	156	184	22.7771
UCCAGGUCGAGAUCCAAUUCCAAAUCGA	chr1:29474974-29475262(-)$1	288	179	207	20.6264
CGAGUGCCCCUGUCCCACCUGGCUCCCC	chr6:44221276-44221516(+)$1	240	126	154	21.0326

#DB
.(((((((.............)))))))	chr22:29696010-29696272(+)$1	1	139	167	22.1559
..(((((..............)))))..	chr5:149829165-149829402(-)$1	1	25	53	21.8619
((((((................))))).	chr19:39331052-39331284(-)$1	1	90	118	22.1506
.(((((((.............)))))))	chr12:56559149-56559455(-)$1	1	214	242	22.8373
.(((((((.............)))))))	chr22:20909121-20909378(+)$1	1	87	115	22.8823
(.((((((..............))))))	chr16:337419-337690(-)$1	1	194	222	21.7036
.(((..((((...........)))).))	chr1:154130026-154130265(-)$1	1	20	48	22.6618
..((((((((............)).)))	chr2:47387788-47388042(-)$1	1	216	244	22.3089
.((((((((............)))))).	chr11:129997598-129997835(+)$1	1	168	196	21.7465
((((.(((((.............)))))	chr11:62609013-62609225(-)$1	1	92	120	22.1620
((..((((.............))))...	chr19:12841571-12841820(-)$1	1	83	111	22.4679
(((((..(((..............))).	chr2:95766116-95766364(-)$1	1	97	125	21.3755
....(((((..............)))))	chr1:43392291-43392549(-)$1	1	79	107	18.5935
((.(((((((...........))...))	chr22:20941035-20941317(+)$1	1	61	89	22.1205
(((((.((((............))))))	chr11:61081676-61082024(-)$1	1	236	264	22.7675
))((((((((............))))..	chr2:217365974-217366254(+)$1	1	64	92	21.1099
..(((................)))))))	chr17:73034917-73035259(-)$1	1	178	206	21.5117
((((((((((.............)))))	chr12:56360675-56361087(+)$1	1	198	226	20.4202
(((((..(((...........)))...)	chr11:34167588-34167912(+)$1	1	210	238	23.3055
((((((((((...........)))))))	chr1:155232667-155232924(-)$1	1	206	234	23.5079
...(((((((...........)))))))	chr7:99621101-99621383(+)$1	1	134	162	21.1142
..((((.(((...........))).)))	chr17:7481569-7481807(+)$1	1	154	182	21.5783
(((((((..............)))))).	chr2:232577056-232577276(+)$1	1	88	116	21.3489
.(((((................))))))	chr22:19486523-19486769(+)$1	1	77	105	22.0695
(((.((((((...........)))))).	chr17:27413374-27413685(-)$1	1	48	76	21.8821
..))))((((.............)))).	chr17:28506114-28506413(+)$1	1	124	152	19.9699
..((((.(((...........)))))))	chr12:30881593-30881953(-)$1	1	11	39	21.5558
(((..(((((............))))).	chr8:11687677-11687967(+)$1	1	51	79	23.5830
.((((((..............))).)))	chr5:176943029-176943292(-)$1	1	181	209	21.9364
(((((((..............)))))))	chr17:7481050-7481292(+)$1	1	117	145	22.4514
(.((..((((..............))))	chr12:76441375-76441594(-)$1	1	133	161	20.8485
((..(((((............)))))))	chr5:891187-891478(-)$1	1	208	236	23.2005
))))((((((...........)))))).	chr22:19950078-19950414(+)$1	1	101	129	20.8667
((((((................))))))	chr19:1010684-1010972(-)$1	1	194	222	21.6030
((...(((((...........)))))..	chr12:123466217-123466527(+)$1	1	163	191	22.7728
)))((..(((............)))..)	chr20:32441233-32441541(+)$1	1	267	295	22.3862
(..(((((((...........)))))))	chr19:5711765-5712008(-)$1	1	55	83	20.2824
(.((((.((............))...))	chr19:42734471-42734736(-)$1	1	27	55	22.4497
...))))(((..............))).	chr6:26199096-26199347(-)$1	1	83	111	19.6283
(((..(((((..............))))	chr15:72499366-72499604(-)$1	1	110	138	21.4256
((((((.(((...........))).)))	chr7:98994252-98994459(-)$1	1	129	157	23.0606
((((..((((............))))..	chr5:149779272-149779520(+)$1	1	179	207	22.6532
((((((................))))))	chr12:76442083-76442298(-)$1	1	10	38	22.4459
((..((((................))))	chr17:75315829-75316112(+)$1	1	85	113	21.6626
(.((((((((............))))))	chr10:103919935-103920193(+)$1	1	217	245	20.1599
(.((((.((.............))))))	chr19:8547941-8548163(+)$1	1	139	167	21.9550
)(((((((((...........)))))))	chr1:40839510-40839829(+)$1	1	111	139	22.5410
(.(.((((..............)))).)	chr15:91446101-91446387(+)$1	1	196	224	22.1679
((.(((...............))).)))	chr17:37360790-37361034(+)$1	1	99	127	18.1047
(((((((..............)))))))	chr4:1978149-1978495(+)$1	1	212	240	22.4514
(((.((.(((...........)))))))	chr11:61734811-61735068(-)$1	1	168	196	21.8921
(..(((((...............)))))	chr15:69072230-69072511(-)$1	1	91	119	18.8415
((((((((((...........)))))))	chr1:67878714-67879047(-)$1	1	60	88	23.5079
.((((((((............)))))).	chr11:129997560-129997798(+)$1	1	206	234	21.7465
(((...((((...........))))...	chr1:70716348-70716637(+)$1	1	156	184	22.7771
(...((((((..............))))	chr1:29474974-29475262(-)$1	1	179	207	20.6264
.((((................))))...	chr6:44221276-44221516(+)$1	1	126	154	21.0326

#PSSM
f : 0.14	b : 0.12	: : 0.10	d : 0.10	# : 0.07	= : 0.07	c : 0.07	e : 0.07	[ : 0.03	" : 0.03	F : 0.03	i : 0.03	! : 0.01	% : 0.01	2 : 0.01	D : 0.01	o : 0.01	g : 0.01	
f : 0.14	e : 0.10	[ : 0.10	b : 0.08	d : 0.08	g : 0.07	: : 0.07	= : 0.07	c : 0.05	i : 0.05	" : 0.03	! : 0.03	# : 0.01	F : 0.01	% : 0.01	2 : 0.01	o : 0.01	
f : 0.15	d : 0.15	e : 0.10	g : 0.07	c : 0.07	! : 0.07	= : 0.07	b : 0.05	i : 0.05	: : 0.03	[ : 0.03	" : 0.03	F : 0.01	% : 0.01	o : 0.01	h : 0.01	a : 0.01	
f : 0.19	d : 0.14	e : 0.12	g : 0.10	! : 0.08	c : 0.07	= : 0.07	[ : 0.05	" : 0.05	b : 0.03	: : 0.01	F : 0.01	h : 0.01	i : 0.01	
f : 0.21	d : 0.19	e : 0.12	g : 0.10	! : 0.08	= : 0.07	c : 0.05	b : 0.05	" : 0.03	[ : 0.01	F : 0.01	h : 0.01	i : 0.01	
e : 0.21	d : 0.17	f : 0.15	g : 0.10	! : 0.10	= : 0.07	y : 0.03	c : 0.03	b : 0.03	[ : 0.01	h : 0.01	i : 0.01	" : 0.01	
d : 0.21	e : 0.17	f : 0.12	y : 0.10	[ : 0.10	g : 0.08	= : 0.07	! : 0.05	c : 0.01	h : 0.01	i : 0.01	x : 0.01	
d : 0.19	e : 0.15	c : 0.14	y : 0.10	f : 0.10	g : 0.08	w : 0.08	= : 0.03	b : 0.03	h : 0.01	i : 0.01	x : 0.01	
d : 0.14	c : 0.14	w : 0.12	y : 0.12	e : 0.12	v : 0.07	b : 0.07	f : 0.07	= : 0.03	g : 0.03	x : 0.03	h : 0.01	i : 0.01	
w : 0.14	d : 0.14	c : 0.14	y : 0.12	v : 0.08	e : 0.08	u : 0.07	b : 0.03	= : 0.03	g : 0.03	f : 0.03	x : 0.03	h : 0.01	i : 0.01	
t : 0.28	w : 0.22	u : 0.19	v : 0.14	y : 0.12	x : 0.03	
t : 0.28	w : 0.22	u : 0.19	v : 0.14	y : 0.12	x : 0.03	
t : 0.28	w : 0.22	u : 0.19	v : 0.14	y : 0.12	x : 0.03	
t : 0.28	w : 0.22	u : 0.19	v : 0.14	y : 0.12	x : 0.03	
t : 0.28	w : 0.22	u : 0.19	v : 0.14	y : 0.12	x : 0.03	
t : 0.28	w : 0.22	u : 0.19	v : 0.14	y : 0.12	x : 0.03	
t : 0.28	w : 0.22	u : 0.19	v : 0.14	y : 0.12	x : 0.03	
t : 0.28	w : 0.22	u : 0.19	v : 0.14	y : 0.12	x : 0.03	
t : 0.28	w : 0.22	u : 0.19	v : 0.14	y : 0.12	x : 0.03	
t : 0.28	w : 0.22	u : 0.19	v : 0.14	y : 0.12	x : 0.03	
t : 0.28	w : 0.22	u : 0.19	v : 0.14	y : 0.12	x : 0.03	
w : 0.14	c : 0.14	u : 0.12	g : 0.08	y : 0.08	f : 0.08	d : 0.07	v : 0.07	= : 0.07	e : 0.05	b : 0.03	i : 0.01	x : 0.01	
c : 0.15	d : 0.14	f : 0.12	g : 0.10	e : 0.10	w : 0.10	b : 0.07	= : 0.07	v : 0.05	y : 0.01	h : 0.01	i : 0.01	x : 0.01	
e : 0.17	d : 0.15	c : 0.15	f : 0.12	g : 0.10	w : 0.08	= : 0.07	b : 0.03	3 : 0.03	y : 0.01	h : 0.01	i : 0.01	
d : 0.26	e : 0.19	f : 0.12	g : 0.10	] : 0.08	= : 0.07	c : 0.05	3 : 0.05	h : 0.01	i : 0.01	b : 0.01	
d : 0.22	e : 0.19	f : 0.15	g : 0.10	3 : 0.10	= : 0.07	c : 0.05	] : 0.01	2 : 0.01	h : 0.01	i : 0.01	b : 0.01	
d : 0.19	e : 0.17	f : 0.17	g : 0.10	3 : 0.08	c : 0.07	= : 0.07	2 : 0.03	4 : 0.01	5 : 0.01	h : 0.01	i : 0.01	] : 0.01	
d : 0.17	e : 0.12	g : 0.10	f : 0.10	] : 0.08	3 : 0.07	= : 0.07	c : 0.05	: : 0.05	4 : 0.03	2 : 0.03	5 : 0.01	b : 0.01	h : 0.01	i : 0.01	a : 0.01	

#score	1240.2332987964892
#seq	57
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_transcript_m2_run1.txt

#BEAR
cc"""eeeeeooooooeeeee4444	chr2:69552815-69553127(-)$1	312	269	294	13.6205
ddd[ccccccooooooccc]cccdd	chr3:156259449-156259674(-)$1	225	74	99	13.7247
fffffccc[aooooooa]ccc]fff	chr1:205686141-205686396(-)$1	255	84	109	11.6014
d####eeeeeooooooeeeee333d	chr12:7044961-7045221(+)$1	260	117	142	13.5306
:eeeee[cccooooooccc]eeeee	chr1:235273406-235273654(-)$1	248	111	136	12.0951
==========lll==========33	chr1:235273768-235274017(-)$1	249	193	218	10.6084
ddddddddddoooooodddd]dddd	chr1:115260527-115260782(-)$1	255	91	116	11.9143
[ddddccc[aooooooa]ccc]ddd	chr17:34052660-34052925(+)$1	265	140	165	12.7623
:dddd!!cccooooooccc22dddd	chr15:44853357-44853602(+)$1	245	130	155	12.4085
fddddeeeeeooooooeeeee4444	chr20:54979240-54979593(+)$1	353	6	31	12.8022
[cccffffffooooooffffff444	chr1:224599118-224599368(-)$1	250	83	108	12.1711
=========ccclllccc]======	chr2:74383233-74383492(-)$1	259	111	136	9.7815
ddd[a[ddddoooooodddd]a]dd	chr2:97560068-97560335(-)$1	267	47	72	12.8888
ddd[ffffffooooooffffff]dd	chr6:18224815-18225083(-)$1	268	63	88	12.4076
adddd!!cccooooooccc]dddd]	chr19:11455826-11456142(-)$1	316	8	33	13.5452
[bb####cccooooooccc333bb]	chr22:38247209-38247471(+)$1	262	197	222	13.3834
dd!!ddddbboooooobb333dddd	chr4:99993094-99993375(-)$1	281	183	208	12.5122
e"""bb!!bboooooobb]bb]eee	chr3:141464328-141464617(+)$1	289	66	91	11.5748
dd[iiiiiiiiillliiiiiiiii]	chr12:56991354-56991617(-)$1	263	12	37	9.7752
[ccc[bbcccooooooccc]bb]cc	chr12:53859615-53859818(+)$1	203	137	162	12.5795
=:==========lll==========	chr22:20937140-20937354(+)$1	214	180	205	9.7519
!!eeeee[bboooooobb]eeeee2	chr11:95567921-95568210(-)$1	289	125	150	11.6021
dddd[eeeeeooooooeeeeedddd	chr3:150261918-150262178(-)$1	260	172	197	12.7787
dd[ccc[cccooooooccc]ccc]d	chr6:2889243-2889500(-)$1	257	2	27	13.8644
dddd:eeeeeooooooeeeeeeeee	chr17:61670690-61670952(+)$1	262	110	135	11.4725
==========oooooo=========	chr7:120936872-120937108(+)$1	236	180	205	14.7593
ee[iiiiiiiiillliiiiiiiiie	chr18:12725501-12725757(+)$1	256	200	225	9.4441
!!dddd[cccooooooccc]dddd2	chr12:53862470-53862685(+)$1	215	140	165	13.0538
ee!!ffffffooooooffffff333	chr15:44673018-44673265(+)$1	247	54	79	12.6312
d!!gggggggooooooggggggg]d	chr6:42175691-42175931(-)$1	240	180	205	13.5270
==========oooooo=========	chr2:48131560-48131835(-)$1	275	100	125	14.7593
FFFgggggggooooooggggggg::	chr10:52066505-52066837(-)$1	332	259	284	9.7675
ddddeeeeeooooooeeeee333dd	chr1:204518789-204519054(+)$1	265	30	55	11.5681
cc"""eeeeeooooooeeeeecccd	chr2:85547836-85548087(-)$1	251	149	174	13.2447
:ccc[eeeeeooooooeeeee]ccc	chr7:116146246-116146522(+)$1	276	128	153	11.8669
bb"""eeeeeooooooeeeee]bb]	chr8:126021205-126021426(+)$1	221	163	188	12.4220
ddd[a!!cccooooooccc22addd	chr7:106800521-106800803(+)$1	282	116	141	13.9064
eebbbb[cccooooooccc]bb22b	chr5:37351201-37351505(-)$1	304	150	175	11.4072
eeegggggggooooooggggggg]e	chr18:13760203-13760470(+)$1	267	226	251	13.0850
ddd!!eeeeeooooooeeeee333d	chr21:39449012-39449281(-)$1	269	141	166	13.6615
eee"""ddddoooooodddd22eee	chr22:32352804-32353095(+)$1	291	72	97	12.2412
==========oooooo=========	chr20:30754641-30754919(+)$1	278	247	272	14.7593
fff[ffffffooooooffffff]ff	chr18:29703380-29703605(+)$1	225	23	48	11.4718
[a[aa[ddddoooooodddd]a]a]	chr11:47377718-47378028(-)$1	310	61	86	12.7265
ddd####cccooooooccc4444dd	chr11:77327462-77327705(-)$1	243	62	87	14.3608
##ccc"""bboooooobb333ccc3	chr2:29023746-29023983(+)$1	237	74	99	12.4906
:dddd!!cccooooooccc22dddd	chr19:2071546-2071815(-)$1	269	183	208	12.4085
ee[dddd[cccoooooocccdddd]	chr5:179156398-179156625(+)$1	227	190	215	11.1589
==========oooooo=========	chr8:71495408-71495657(-)$1	249	169	194	14.7593
==========oooooo=========	chr1:988204-988480(+)$1	276	25	50	14.7593
fff####cccoooooocccffffff	chr1:87328933-87329190(-)$1	257	167	192	12.8024
ff$$$$$cccoooooocccffffff	chr15:56385797-56386084(-)$1	287	35	60	12.0126
========bboooooobb]======	chr1:3696816-3697203(-)$1	387	194	219	13.6341
dd####ddddoooooodddddddd]	chr2:188330472-188330704(-)$1	232	84	109	12.6714
dd[gggggggoooooogggggggdd	chr2:114715649-114715910(+)$1	261	29	54	13.5734

#otherMatches

#Seq PSSM
GAUGUGAUUUAUUUUGAAAUUUGUU	chr2:69552815-69553127(-)$1	312	269	294	13.6205
CAACUGAGAAUUAUAUUUCAUCAUU	chr3:156259449-156259674(-)$1	225	74	99	13.7247
GGAUAGAACAUUUUCUUUUUCAUAU	chr1:205686141-205686396(-)$1	255	84	109	11.6014
CCACAGCUCUAUCCUGGGGGCACUG	chr12:7044961-7045221(+)$1	260	117	142	13.5306
UGGGGAGGGUAGAAACGCCGUUUCC	chr1:235273406-235273654(-)$1	248	111	136	12.0951
GCUUUUUUGUUACACAGGAGGGCUU	chr1:235273768-235274017(-)$1	249	193	218	10.6084
GGAAUACUUAUUCUAUUGAGCUAUU	chr1:115260527-115260782(-)$1	255	91	116	11.9143
AGUGUGUCAGGGCAAGCAGACAACA	chr17:34052660-34052925(+)$1	265	140	165	12.7623
ACUUAGGUGCUAAUGUGCAAAUGAG	chr15:44853357-44853602(+)$1	245	130	155	12.4085
UUUCAAGAAUCCCUCAAUUCUAUCC	chr20:54979240-54979593(+)$1	353	6	31	12.8022
UGGACCUCUUUGUUUUAGGAGGCAG	chr1:224599118-224599368(-)$1	250	83	108	12.1711
CAGUCAUUUCUUUACAAGAAAAUGA	chr2:74383233-74383492(-)$1	259	111	136	9.7815
CUGGGGAUAUGAGUGGGUAUGUGUG	chr2:97560068-97560335(-)$1	267	47	72	12.8888
AGUAAAUGAACUGAUUUUUAUUAAC	chr6:18224815-18225083(-)$1	268	63	88	12.4076
CCGGGAAGUGCCCUAACACCCCUGU	chr19:11455826-11456142(-)$1	316	8	33	13.5452
ACCAGAAAGUGUAUGAGCUACAGGC	chr22:38247209-38247471(+)$1	262	197	222	13.3834
CUCAGAAACAUAACGUUGAACUUUU	chr4:99993094-99993375(-)$1	281	183	208	12.5122
GAAAGAGCUCCAAAUUGAAUCACCU	chr3:141464328-141464617(+)$1	289	66	91	11.5748
GCAGGGAGGCUUCCUGGGCCUUCCA	chr12:56991354-56991617(-)$1	263	12	37	9.7752
CAGAUGUAAGUUUUGUUUUCACUUC	chr12:53859615-53859818(+)$1	203	137	162	12.5795
GCGAGCUCUGGGGCCCUCAGAGCUC	chr22:20937140-20937354(+)$1	214	180	205	9.7519
CAUCAGUUUUCAAACCAACACUGAA	chr11:95567921-95568210(-)$1	289	125	150	11.6021
GAUACAGUAGUGGACCCUACUUAUU	chr3:150261918-150262178(-)$1	260	172	197	12.7787
CAAUGACCAGGUUGGACUGUUUAAU	chr6:2889243-2889500(-)$1	257	2	27	13.8644
CAGGUGCCUUCCCAAAGAGGCUUGG	chr17:61670690-61670952(+)$1	262	110	135	11.4725
uuuuuauauauauuuuuauauGAAG	chr7:120936872-120937108(+)$1	236	180	205	14.7593
UGUAAAUUUUGUACAAUAAAAUUUU	chr18:12725501-12725757(+)$1	256	200	225	9.4441
AACGAUGUAAGUGUAGUUAGGUUGC	chr12:53862470-53862685(+)$1	215	140	165	13.0538
UAAUUCCAGGCUCAAACUUGGACAG	chr15:44673018-44673265(+)$1	247	54	79	12.6312
GCUACUGGUGUUCAAUUAUUAGUUU	chr6:42175691-42175931(-)$1	240	180	205	13.5270
uguguguguguguguuugcgcgcgc	chr2:48131560-48131835(-)$1	275	100	125	14.7593
GUCUUUCCAGUCACAUCUGGAAAUA	chr10:52066505-52066837(-)$1	332	259	284	9.7675
GAACAUAAAAAUGCAUUUAUUCCGU	chr1:204518789-204519054(+)$1	265	30	55	11.5681
CAAAUGGAAAUUCCCCUUUCUUGGU	chr2:85547836-85548087(-)$1	251	149	174	13.2447
AACUUUGUAACCAGAAUUAUACAGU	chr7:116146246-116146522(+)$1	276	128	153	11.8669
UGAAAUUUGAAAAUUAUUAAAACAU	chr8:126021205-126021426(+)$1	221	163	188	12.4220
UAACAUACAUAUUCCAGUGGUUUUA	chr7:106800521-106800803(+)$1	282	116	141	13.9064
CACUGAUAAUGGCAGAAUUUUCUUG	chr5:37351201-37351505(-)$1	304	150	175	11.4072
ACAGUUGAAUGUAAGUGUUCAAUAU	chr18:13760203-13760470(+)$1	267	226	251	13.0850
ACCACAUUCUUCCUUCAGGAUAAAG	chr21:39449012-39449281(-)$1	269	141	166	13.6615
CUGUAUUGGCAGCACAGCUACUCAG	chr22:32352804-32353095(+)$1	291	72	97	12.2412
UCCCUAAGAGAUUCUCUUUUUAGGG	chr20:30754641-30754919(+)$1	278	247	272	14.7593
UAAUGGUUCAAGAUAAUGAACCUUU	chr18:29703380-29703605(+)$1	225	23	48	11.4718
gggugggugugagugugcaugugag	chr11:47377718-47378028(-)$1	310	61	86	12.7265
AGUUCUUUCUUGAGACAGACUAUAC	chr11:77327462-77327705(-)$1	243	62	87	14.3608
AUAUGUCUUUUUUUCUAAUUCCGUU	chr2:29023746-29023983(+)$1	237	74	99	12.4906
UGAGAAAAGGCAGCCACCUCCUCUC	chr19:2071546-2071815(-)$1	269	183	208	12.4085
UGCAGUCCGUUGCUGAAAAUGAUUA	chr5:179156398-179156625(+)$1	227	190	215	11.1589
GAAGGUGGAGGGAACAUUCUGCUUU	chr8:71495408-71495657(-)$1	249	169	194	14.7593
uccauguauguguguguauaugugg	chr1:988204-988480(+)$1	276	25	50	14.7593
GUGAAAUGGCAGUAUAGUCCAUGAU	chr1:87328933-87329190(-)$1	257	167	192	12.8024
UUUCCUAGUGCCAACCCACAAAAUA	chr15:56385797-56386084(-)$1	287	35	60	12.0126
CGUGGCACUGUAcagucaugugcca	chr1:3696816-3697203(-)$1	387	194	219	13.6341
AGCCAUGUGCAGUCUGGCAUcucaa	chr2:188330472-188330704(-)$1	232	84	109	12.6714
UUCUUGCUUUAAAAGAAGAGUAAAG	chr2:114715649-114715910(+)$1	261	29	54	13.5734

#DB
((...(((((......)))))....	chr2:69552815-69553127(-)$1	1	269	294	13.6205
(((.((((((......))).)))))	chr3:156259449-156259674(-)$1	1	74	99	13.7247
((((((((.(......).))).)))	chr1:205686141-205686396(-)$1	1	84	109	11.6014
(....(((((......)))))...)	chr12:7044961-7045221(+)$1	1	117	142	13.5306
.(((((.(((......))).)))))	chr1:235273406-235273654(-)$1	1	111	136	12.0951
((((((((((...))))))))))..	chr1:235273768-235274017(-)$1	1	193	218	10.6084
((((((((((......)))).))))	chr1:115260527-115260782(-)$1	1	91	116	11.9143
.(((((((.(......).))).)))	chr17:34052660-34052925(+)$1	1	140	165	12.7623
.((((..(((......)))..))))	chr15:44853357-44853602(+)$1	1	130	155	12.4085
((((((((((......)))))....	chr20:54979240-54979593(+)$1	1	6	31	12.8022
.(((((((((......))))))...	chr1:224599118-224599368(-)$1	1	83	108	12.1711
((((((((((((...))).))))))	chr2:74383233-74383492(-)$1	1	111	136	9.7815
(((.(.((((......)))).).))	chr2:97560068-97560335(-)$1	1	47	72	12.8888
(((.((((((......)))))).))	chr6:18224815-18225083(-)$1	1	63	88	12.4076
(((((..(((......))).)))).	chr19:11455826-11456142(-)$1	1	8	33	13.5452
.((....(((......)))...)).	chr22:38247209-38247471(+)$1	1	197	222	13.3834
((..((((((......))...))))	chr4:99993094-99993375(-)$1	1	183	208	12.5122
(...((..((......)).)).)))	chr3:141464328-141464617(+)$1	1	66	91	11.5748
((.(((((((((...))))))))).	chr12:56991354-56991617(-)$1	1	12	37	9.7752
.(((.(((((......))).)).))	chr12:53859615-53859818(+)$1	1	137	162	12.5795
).((((((((((...))))))))))	chr22:20937140-20937354(+)$1	1	180	205	9.7519
..(((((.((......)).))))).	chr11:95567921-95568210(-)$1	1	125	150	11.6021
((((.(((((......)))))))))	chr3:150261918-150262178(-)$1	1	172	197	12.7787
((.(((.(((......))).))).)	chr6:2889243-2889500(-)$1	1	2	27	13.8644
)))).(((((......)))))((((	chr17:61670690-61670952(+)$1	1	110	135	11.4725
((((((((((......)))))))))	chr7:120936872-120937108(+)$1	1	180	205	14.7593
((.(((((((((...))))))))))	chr18:12725501-12725757(+)$1	1	200	225	9.4441
..((((.(((......))).)))).	chr12:53862470-53862685(+)$1	1	140	165	13.0538
((..((((((......))))))...	chr15:44673018-44673265(+)$1	1	54	79	12.6312
(..(((((((......))))))).)	chr6:42175691-42175931(-)$1	1	180	205	13.5270
((((((((((......)))))))))	chr2:48131560-48131835(-)$1	1	100	125	14.7593
)))(((((((......)))))))..	chr10:52066505-52066837(-)$1	1	259	284	9.7675
(((((((((......)))))...))	chr1:204518789-204519054(+)$1	1	30	55	11.5681
((...(((((......))))))))(	chr2:85547836-85548087(-)$1	1	149	174	13.2447
.(((.(((((......))))).)))	chr7:116146246-116146522(+)$1	1	128	153	11.8669
((...(((((......))))).)).	chr8:126021205-126021426(+)$1	1	163	188	12.4220
(((.(..(((......)))..))))	chr7:106800521-106800803(+)$1	1	116	141	13.9064
((((((.(((......))).))..)	chr5:37351201-37351505(-)$1	1	150	175	11.4072
((((((((((......))))))).)	chr18:13760203-13760470(+)$1	1	226	251	13.0850
(((..(((((......)))))...)	chr21:39449012-39449281(-)$1	1	141	166	13.6615
(((...((((......))))..)))	chr22:32352804-32353095(+)$1	1	72	97	12.2412
((((((((((......)))))))))	chr20:30754641-30754919(+)$1	1	247	272	14.7593
(((.((((((......)))))).))	chr18:29703380-29703605(+)$1	1	23	48	11.4718
.(.((.((((......)))).).).	chr11:47377718-47378028(-)$1	1	61	86	12.7265
(((....(((......)))....))	chr11:77327462-77327705(-)$1	1	62	87	14.3608
..(((...((......))...))).	chr2:29023746-29023983(+)$1	1	74	99	12.4906
.((((..(((......)))..))))	chr19:2071546-2071815(-)$1	1	183	208	12.4085
((.((((.(((......))))))).	chr5:179156398-179156625(+)$1	1	190	215	11.1589
((((((((((......)))))))))	chr8:71495408-71495657(-)$1	1	169	194	14.7593
((((((((((......)))))))))	chr1:988204-988480(+)$1	1	25	50	14.7593
(((....(((......)))))))))	chr1:87328933-87329190(-)$1	1	167	192	12.8024
((.....(((......)))))))))	chr15:56385797-56386084(-)$1	1	35	60	12.0126
((((((((((......)).))))))	chr1:3696816-3697203(-)$1	1	194	219	13.6341
((....((((......)))))))).	chr2:188330472-188330704(-)$1	1	84	109	12.6714
((.(((((((......)))))))))	chr2:114715649-114715910(+)$1	1	29	54	13.5734

#PSSM
d : 0.30	= : 0.16	e : 0.12	f : 0.09	[ : 0.09	: : 0.07	c : 0.03	! : 0.03	a : 0.01	F : 0.01	b : 0.01	# : 0.01	
d : 0.36	= : 0.14	e : 0.12	c : 0.09	f : 0.07	! : 0.05	# : 0.03	b : 0.03	" : 0.01	: : 0.01	F : 0.01	a : 0.01	
d : 0.29	= : 0.16	[ : 0.10	" : 0.07	e : 0.07	c : 0.07	f : 0.05	! : 0.05	# : 0.03	b : 0.03	F : 0.01	$ : 0.01	
d : 0.20	= : 0.16	" : 0.09	[ : 0.09	# : 0.09	c : 0.09	g : 0.07	! : 0.05	e : 0.03	i : 0.03	f : 0.01	b : 0.01	a : 0.01	$ : 0.01	
= : 0.16	d : 0.16	f : 0.09	# : 0.09	" : 0.07	g : 0.07	c : 0.05	e : 0.05	a : 0.05	[ : 0.05	b : 0.03	i : 0.03	: : 0.01	! : 0.01	$ : 0.01	
e : 0.21	= : 0.16	c : 0.07	d : 0.07	! : 0.07	f : 0.07	# : 0.07	g : 0.07	b : 0.05	[ : 0.03	i : 0.03	" : 0.03	$ : 0.01	
e : 0.20	= : 0.16	d : 0.12	! : 0.09	[ : 0.07	f : 0.07	g : 0.07	c : 0.05	# : 0.05	i : 0.03	b : 0.01	" : 0.01	$ : 0.01	
c : 0.29	e : 0.18	= : 0.16	d : 0.10	f : 0.07	g : 0.07	i : 0.03	[ : 0.03	! : 0.01	" : 0.01	
c : 0.27	e : 0.18	= : 0.14	d : 0.09	b : 0.09	f : 0.07	g : 0.07	[ : 0.03	i : 0.03	
c : 0.29	e : 0.16	= : 0.12	d : 0.09	b : 0.09	f : 0.07	g : 0.07	a : 0.03	i : 0.03	o : 0.01	
o : 0.89	c : 0.03	i : 0.03	l : 0.01	= : 0.01	
o : 0.90	i : 0.03	l : 0.01	c : 0.01	= : 0.01	
o : 0.90	l : 0.09	
o : 0.90	l : 0.07	= : 0.01	
o : 0.90	l : 0.07	= : 0.01	
o : 0.89	= : 0.03	i : 0.03	c : 0.01	e : 0.01	
c : 0.27	e : 0.18	= : 0.12	d : 0.09	b : 0.09	f : 0.07	g : 0.07	a : 0.03	i : 0.03	o : 0.01	
c : 0.29	e : 0.18	= : 0.12	d : 0.09	b : 0.09	f : 0.07	g : 0.07	] : 0.03	i : 0.03	
c : 0.30	e : 0.18	= : 0.12	d : 0.09	f : 0.07	] : 0.07	g : 0.07	3 : 0.03	i : 0.03	
e : 0.20	= : 0.16	] : 0.12	f : 0.10	d : 0.09	g : 0.07	c : 0.05	2 : 0.05	3 : 0.05	i : 0.03	b : 0.01	4 : 0.01	
e : 0.20	= : 0.16	f : 0.10	c : 0.07	2 : 0.07	d : 0.07	3 : 0.07	g : 0.07	] : 0.05	b : 0.05	i : 0.03	4 : 0.01	
= : 0.16	d : 0.16	f : 0.10	] : 0.09	c : 0.07	3 : 0.07	g : 0.07	4 : 0.05	e : 0.05	a : 0.05	i : 0.03	b : 0.03	2 : 0.01	
d : 0.20	= : 0.16	c : 0.09	e : 0.09	] : 0.09	4 : 0.07	3 : 0.07	g : 0.07	f : 0.05	b : 0.03	i : 0.03	2 : 0.01	
d : 0.30	= : 0.14	e : 0.09	f : 0.07	3 : 0.07	c : 0.07	4 : 0.05	] : 0.05	b : 0.03	i : 0.03	: : 0.01	2 : 0.01	a : 0.01	
d : 0.32	= : 0.14	] : 0.12	e : 0.10	f : 0.07	4 : 0.05	3 : 0.05	c : 0.03	2 : 0.03	: : 0.01	b : 0.01	

#score	690.0936652539385
#seq	55
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_UTR_m1_run2.txt

#BEAR
dddd!!ffffffrrrrrrrrrffffff22dddd:	chr5:180683806-180684080(+)$1	274	11	45	12.7001
iiiii"""a[bbqqqqqqqqbb]aiiiiiiiiiE	chr8:91017540-91017870(+)$1	330	125	159	12.8617
#dddd[eeeeeuuuuuuuuuuuueeeee22dddd	chr6:64422831-64423193(+)$1	362	214	248	11.8976
[a[ggggggg[aqqqqqqqqa]ggggggg]a]bb	chr1:46073460-46073739(+)$1	279	105	139	15.7945
"""eeeee[cccqqqqqqqqccc22eeeee4444	chr1:241795778-241796010(-)$1	232	175	209	15.1079
fffff[ddddwwwwwwwwwwwwwwdddd22ffff	chrX:135956798-135957053(-)$1	255	114	148	13.9799
!ffffffwwwwwwwwwwwwwwffffff22bbccc	chr3:42679138-42679394(+)$1	256	6	40	15.7274
:ffffff!!cccqqqqqqqqccc22ffffffccc	chr3:42680266-42680503(+)$1	237	101	135	13.9768
eeeee[bb[cccqqqqqqqqccc]bbeeeee:::	chr6:64421398-64421666(+)$1	268	71	105	12.0794
[a[ggggggg[aqqqqqqqqa]ggggggg]a]bb	chr1:46073433-46073660(+)$1	227	132	166	15.7945
bb[a[bb!!cccqqqqqqqqccc22bb]abb]bb	chr8:11665466-11665712(+)$1	246	94	128	13.7128
"ffffffavvvvvvvvvvvvva]ffffffeeeee	chrX:153904606-153904922(-)$1	316	194	228	12.0717
[dddd[eeeee[aooooooa]eeeeeddddccc3	chr16:24802489-24802749(+)$1	260	132	166	9.5431
!dddd[ffffffqqqqqqqqffffff]ddddccc	chr3:160150795-160151038(+)$1	243	32	66	14.6445
======:eeeeerrrrrrrrreeeee:ddddooo	chr6:83877574-83877875(-)$1	301	114	148	10.6897

#otherMatches

#Seq PSSM
CAACACUUUCAGAUAACUCAACUGAAGAAGUUGA	chr5:180683806-180684080(+)$1	274	11	45	12.7001
UUUUUUCCAGUCUGAAAAAUGAGUAAAGAUGGAA	chr8:91017540-91017870(+)$1	330	125	159	12.8617
CUGGCCACCUGUUGUUCAUCUCCCAGGUCAGCCA	chr6:64422831-64423193(+)$1	362	214	248	11.8976
CGGUUCUUGAACAACUGGUAGGUCAAGAAGUACC	chr1:46073460-46073739(+)$1	279	105	139	15.7945
CAUGAACUUGCUUUUCCUCUAGUCCAGUUUCCAU	chr1:241795778-241796010(-)$1	232	175	209	15.1079
GCAAUAUGAAGGCAAGUUCUACAGUUCAAAAUUG	chrX:135956798-135957053(-)$1	255	114	148	13.9799
ACAGUUUAGCAAAUAUUAAAGAGACUGGUAGCUC	chr3:42679138-42679394(+)$1	256	6	40	15.7274
ACUGAGAAAUCCAGUGAAGAGGACCUUUCAGGUA	chr3:42680266-42680503(+)$1	237	101	135	13.9768
GGUUUUAUACAGGGCUUGAACUGCAUAGACCUAA	chr6:64421398-64421666(+)$1	268	71	105	12.0794
CGGUUCUUGAACAACUGGUAGGUCAAGAAGUACC	chr1:46073433-46073660(+)$1	227	132	166	15.7945
ggauggagggggauguggaaccuaaucggcuguc	chr8:11665466-11665712(+)$1	246	94	128	13.7128
AGCUCUGCAUCACCACACACAGCCAGAGCCUGUG	chrX:153904606-153904922(-)$1	316	194	228	12.0717
UGGAACGAACUUGGUAAAACUAGUUCUUUCACUU	chr16:24802489-24802749(+)$1	260	132	166	9.5431
AGAAAAGUUGGAAAAAGAUCUUCAACCUUUCGGG	chr3:160150795-160151038(+)$1	243	32	66	14.6445
AGAGGAUAGGACUCCCUGAGUGUCCUCCACAUCG	chr6:83877574-83877875(-)$1	301	114	148	10.6897

#DB
((((..((((((.........))))))..)))).	chr5:180683806-180684080(+)$1	1	11	45	12.7001
(((((...(.((........)).))))))))))(	chr8:91017540-91017870(+)$1	1	125	159	12.8617
.((((.(((((............)))))..))))	chr6:64422831-64423193(+)$1	1	214	248	11.8976
.(.(((((((.(........).))))))).).))	chr1:46073460-46073739(+)$1	1	105	139	15.7945
...(((((.(((........)))..)))))....	chr1:241795778-241796010(-)$1	1	175	209	15.1079
(((((.((((..............))))..))))	chrX:135956798-135957053(-)$1	1	114	148	13.9799
.((((((..............))))))..))(((	chr3:42679138-42679394(+)$1	1	6	40	15.7274
.((((((..(((........)))..))))))(((	chr3:42680266-42680503(+)$1	1	101	135	13.9768
(((((.((.(((........))).)))))))...	chr6:64421398-64421666(+)$1	1	71	105	12.0794
.(.(((((((.(........).))))))).).))	chr1:46073433-46073660(+)$1	1	132	166	15.7945
((.(.((..(((........)))..)).))).))	chr8:11665466-11665712(+)$1	1	94	128	13.7128
.(((((((.............).)))))))))))	chrX:153904606-153904922(-)$1	1	194	228	12.0717
.((((.(((((.(......).)))))))))))).	chr16:24802489-24802749(+)$1	1	132	166	9.5431
.((((.((((((........)))))).)))))))	chr3:160150795-160151038(+)$1	1	32	66	14.6445
)))))).(((((.........))))).((((...	chr6:83877574-83877875(-)$1	1	114	148	10.6897

#PSSM
[ : 0.20	" : 0.13	! : 0.13	d : 0.06	i : 0.06	# : 0.06	f : 0.06	: : 0.06	e : 0.06	b : 0.06	= : 0.06	
d : 0.26	f : 0.26	a : 0.13	i : 0.06	" : 0.06	e : 0.06	b : 0.06	= : 0.06	
d : 0.26	f : 0.26	[ : 0.20	i : 0.06	" : 0.06	e : 0.06	= : 0.06	
d : 0.26	f : 0.26	g : 0.13	e : 0.13	i : 0.06	a : 0.06	= : 0.06	
f : 0.26	d : 0.20	g : 0.13	e : 0.13	! : 0.06	i : 0.06	[ : 0.06	= : 0.06	
[ : 0.33	f : 0.20	g : 0.13	! : 0.06	" : 0.06	e : 0.06	b : 0.06	= : 0.06	
f : 0.33	e : 0.20	g : 0.13	b : 0.13	" : 0.06	d : 0.06	: : 0.06	
e : 0.26	f : 0.13	g : 0.13	! : 0.13	" : 0.06	d : 0.06	w : 0.06	b : 0.06	a : 0.06	
e : 0.20	f : 0.13	g : 0.13	[ : 0.13	! : 0.13	a : 0.06	d : 0.06	w : 0.06	v : 0.06	
c : 0.26	e : 0.20	f : 0.13	g : 0.13	[ : 0.06	d : 0.06	w : 0.06	v : 0.06	
c : 0.26	e : 0.20	f : 0.13	[ : 0.13	w : 0.13	b : 0.06	v : 0.06	
c : 0.26	f : 0.13	a : 0.13	w : 0.13	b : 0.06	u : 0.06	v : 0.06	[ : 0.06	e : 0.06	
q : 0.53	r : 0.13	w : 0.13	u : 0.06	v : 0.06	a : 0.06	
q : 0.53	r : 0.13	w : 0.13	u : 0.06	v : 0.06	o : 0.06	
q : 0.53	r : 0.13	w : 0.13	u : 0.06	v : 0.06	o : 0.06	
q : 0.53	r : 0.13	w : 0.13	u : 0.06	v : 0.06	o : 0.06	
q : 0.53	r : 0.13	w : 0.13	u : 0.06	v : 0.06	o : 0.06	
q : 0.53	r : 0.13	w : 0.13	u : 0.06	v : 0.06	o : 0.06	
q : 0.53	r : 0.13	w : 0.13	u : 0.06	v : 0.06	o : 0.06	
q : 0.53	r : 0.13	w : 0.13	u : 0.06	v : 0.06	a : 0.06	
c : 0.26	r : 0.13	a : 0.13	w : 0.13	b : 0.06	u : 0.06	v : 0.06	] : 0.06	f : 0.06	
c : 0.26	f : 0.20	] : 0.13	e : 0.13	b : 0.06	u : 0.06	w : 0.06	a : 0.06	
c : 0.26	f : 0.20	] : 0.13	g : 0.13	e : 0.13	u : 0.06	w : 0.06	
f : 0.26	e : 0.20	2 : 0.20	g : 0.13	a : 0.06	w : 0.06	] : 0.06	
f : 0.26	e : 0.20	2 : 0.20	g : 0.13	i : 0.06	d : 0.06	b : 0.06	
f : 0.33	e : 0.26	g : 0.13	b : 0.13	i : 0.06	d : 0.06	
f : 0.26	e : 0.20	g : 0.13	d : 0.13	i : 0.06	b : 0.06	] : 0.06	: : 0.06	
d : 0.26	e : 0.20	2 : 0.13	g : 0.13	f : 0.13	i : 0.06	] : 0.06	
2 : 0.26	d : 0.20	g : 0.13	e : 0.13	f : 0.13	i : 0.06	a : 0.06	
d : 0.26	e : 0.20	2 : 0.13	] : 0.13	b : 0.13	i : 0.06	f : 0.06	
d : 0.26	a : 0.13	f : 0.13	b : 0.13	e : 0.13	i : 0.06	4 : 0.06	c : 0.06	
c : 0.26	] : 0.20	d : 0.13	i : 0.06	4 : 0.06	f : 0.06	: : 0.06	e : 0.06	o : 0.06	
c : 0.26	b : 0.20	d : 0.13	i : 0.06	4 : 0.06	f : 0.06	: : 0.06	e : 0.06	o : 0.06	
b : 0.20	c : 0.20	: : 0.13	E : 0.06	d : 0.06	4 : 0.06	f : 0.06	e : 0.06	3 : 0.06	o : 0.06	

#score	200.5823306110867
#seq	15
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_CDS_m2_run1.txt

#BEAR
dddd[dddduuuuuuuuuuuudddd]dd	chr16:47699752-47700044(+)$1	292	221	249	23.8940
ffffffwwwwwwwwwwwwwwffffffdd	chr5:72183960-72184221(+)$1	261	172	200	21.7136
ggg:eeeeevvvvvvvvvvvvveeeee:	chr17:7403889-7404154(+)$1	265	120	148	20.9544
f####cccuuuuuuuuuuuuccc333ff	chr3:139077523-139077754(-)$1	231	78	106	24.7405
ggggg[bbuuuuuuuuuuuubb]ggggg	chr11:62603066-62603342(-)$1	276	57	85	24.0345
ddddeeeeettttttttttteeeee]dd	chr20:18506944-18507188(+)$1	244	151	179	23.8784
dd[bbdddduuuuuuuuuuuudddd]bb	chr1:45479480-45479742(+)$1	262	52	80	23.0544
!!dddd[bbwwwwwwwwwwwwwwbb]dd	chr17:74035654-74035906(-)$1	252	146	174	21.0790
eeeddddwwwwwwwwwwwwwwdddd]ee	chr6:30558242-30558483(+)$1	241	101	129	22.7579
===="""bbtttttttttttbb22====	chr12:58144956-58145225(-)$1	269	220	248	23.2200
dddffffffuuuuuuuuuuuuffffff]	chrX:108921164-108921417(-)$1	253	48	76	22.7485
ccc[eeeeeuuuuuuuuuuuueeeeecc	chr3:149089493-149089754(-)$1	261	154	182	23.9062
[ccc!!bbuuuuuuuuuuuubb4444cc	chr8:123963813-123964075(+)$1	262	103	131	24.0675
!!ggggggguuuuuuuuuuuuggggggg	chr2:170493317-170493645(+)$1	328	98	126	23.9689
b[bbeeeeettttttttttteeeee22b	chr19:34890362-34890593(+)$1	231	33	61	23.1052
c####cccuuuuuuuuuuuuccc333cc	chr19:57326622-57326917(-)$1	295	139	167	25.0813
ccc[ddddvvvvvvvvvvvvvdddd]cc	chrX:47062041-47062295(+)$1	254	120	148	24.1070
cc!!dddduuuuuuuuuuuudddd22cc	chr7:135304473-135304734(+)$1	261	100	128	24.2500
c[bb[cccuuuuuuuuuuuuccc]bb]c	chr4:39506806-39507065(-)$1	259	136	164	23.9881
dddd[cccwwwwwwwwwwwwwwcccddd	chr14:21867707-21867955(-)$1	248	28	56	22.8464
e[bb[dddduuuuuuuuuuuudddd]bb	chr4:1823807-1824051(-)$1	244	122	150	23.3633
"dddd[ccctttttttttttccc]dddd	chr5:118860810-118861072(+)$1	262	56	84	23.6356
iiiiiiiiuuuuuuuuuuuuiiiiiiii	chr4:83778004-83778244(-)$1	240	142	170	24.2179
!!ffffffattttttttttta]ffffff	chr7:29983503-29983785(-)$1	282	144	172	23.4102
dddd!!bbuuuuuuuuuuuubb22dddd	chr11:62291058-62291284(-)$1	226	30	58	23.0903
fffff[ccctttttttttttccc22fff	chr6:31750452-31750720(-)$1	268	21	49	23.2201
fff[dddduuuuuuuuuuuuddddffff	chr11:61081678-61081932(-)$1	254	146	174	23.5920
dddd[cccuuuuuuuuuuuuccc]dddd	chr11:46791412-46791674(-)$1	262	52	80	24.3999
dbb!!ddddtttttttttttdddd333b	chr20:33595291-33595532(-)$1	241	136	164	23.6583
[eeeeewwwwwwwwwwwwwweeeeea]d	chr13:53035090-53035483(+)$1	393	27	55	22.7094
eeeeyyyyyyyyyyyyyyyyeeeee]bb	chr17:72859217-72859467(-)$1	250	140	168	21.3020
dddd[ddddtttttttttttdddd]ddd	chr2:211476776-211477104(+)$1	328	21	49	23.3028
[eeeeeyyyyyyyyyyyyyyyyeeeeea	chr14:24571861-24572083(+)$1	222	116	144	22.2783
ccc[bbwwwwwwwwwwwwwwbbccc]ee	chrX:53595587-53595801(-)$1	214	120	148	22.1409
a[ffffffuuuuuuuuuuuuffffff]a	chr17:7127700-7127945(+)$1	245	77	105	23.5774
dd[a[dddduuuuuuuuuuuudddda33	chr1:39853678-39854058(+)$1	380	343	371	23.8234
dddd!!bbvvvvvvvvvvvvvbb22ddd	chr19:5927878-5928199(-)$1	321	75	103	22.5842
ccceeeeeuuuuuuuuuuuueeeee22c	chr8:48761952-48762161(-)$1	209	121	149	24.4441
DDggggggguuuuuuuuuuuuggggggg	chr10:82034803-82035044(-)$1	241	25	53	21.8953
====[cccwwwwwwwwwwwwwwccc]==	chr2:192246131-192246390(+)$1	259	33	61	24.0514
ffffffffftttttttttttffffff22	chr16:27539850-27540137(-)$1	287	229	257	22.2292
ggggg[ccctttttttttttcccggggg	chr17:78109762-78110029(-)$1	267	36	64	24.4386
"ggggggguuuuuuuuuuuuggggggg]	chr19:34712423-34712744(+)$1	321	230	258	24.3305
====[ddddtttttttttttdddd]===	chr6:43483625-43483934(-)$1	309	183	211	24.2362
iiiffffffvvvvvvvvvvvvvffffff	chr11:57574286-57574514(+)$1	228	114	142	22.0639
""eeeeevvvvvvvvvvvvveeeee333	chr22:42032571-42032845(+)$1	274	162	190	24.0091
bb!!eeeeettttttttttteeeee22b	chr1:226567522-226567832(-)$1	310	260	288	23.3719
!!a[eeeeettttttttttteeeee]a2	chr10:88820344-88820556(-)$1	212	43	71	24.2143
gggg!!ccctttttttttttccc]gggg	chr9:96002024-96002298(+)$1	274	44	72	24.6426
ggggggxxxxxxxxxxxxxxxggggggg	chr9:19050044-19050346(+)$1	302	147	175	19.4803
deeeeewwwwwwwwwwwwwweeeee]dd	chr9:127113087-127113358(+)$1	271	12	40	22.9320
d!!cccyyyyyyyyyyyyyyyyccc]dd	chr16:89595840-89596089(+)$1	249	192	220	22.7623
gg!!acccuuuuuuuuuuuuccc]a22g	chr12:26493116-26493335(-)$1	219	132	160	24.8770
gggggggvvvvvvvvvvvvvggggggg:	chr2:96968848-96969097(-)$1	249	216	244	22.7452
[bb[bbwwwwwwwwwwwwwwbb]bb]bb	chr13:76415913-76416215(+)$1	302	10	38	20.8840
i!!eeeeeuuuuuuuuuuuueeeee]ii	chr8:11687697-11687918(+)$1	221	33	61	25.0215

#otherMatches

#Seq PSSM
GUCCCGGUUGCAAAGAUUUCUGGCUAGG	chr16:47699752-47700044(+)$1	292	221	249	23.8940
GGGACAGAUUCAUAACACAGUGUUCUUU	chr5:72183960-72184221(+)$1	261	172	200	21.7136
CACAGCCGGCCAUCCUAAAGCCCCGGCC	chr17:7403889-7404154(+)$1	265	120	148	20.9544
UCAUUGCUUUAUUCUCUGAUAGCCAAAU	chr3:139077523-139077754(-)$1	231	78	106	24.7405
UGUGUAGGAUGCGCCAAGACCCAGCACA	chr11:62603066-62603342(-)$1	276	57	85	24.0345
GAGAUGAAUUAAAGAUUCCUAUUCGUUC	chr20:18506944-18507188(+)$1	244	151	179	23.8784
GAAGGGUCAGUCUGGCUUCUGUGACACC	chr1:45479480-45479742(+)$1	262	52	80	23.0544
GAUUCUGACUCUUAAUCUGUAUUGUGAG	chr17:74035654-74035906(-)$1	252	146	174	21.0790
AUCACAGAAACCAAUUGCCAGCUGUGGG	chr6:30558242-30558483(+)$1	241	101	129	22.7579
AGCCGAAACGAUCAAGGUGAGUGGGGUU	chr12:58144956-58145225(-)$1	269	220	248	23.2200
GUUAAAAUAUUUCUCUUAUUUUGUUUUA	chrX:108921164-108921417(-)$1	253	48	76	22.7485
GGAAUGGAAUGUAUCUCUGUUUUCUAUC	chr3:149089493-149089754(-)$1	261	154	182	23.9062
AAGAAAACGAAGUGAUAGAGGUGAAAUC	chr8:123963813-123964075(+)$1	262	103	131	24.0675
GAUAUAACUAAAGGUAAACACAGUUAUA	chr2:170493317-170493645(+)$1	328	98	126	23.9689
UGCUUCCCUUCAAGGGGUUUAGGGAUCA	chr19:34890362-34890593(+)$1	231	33	61	23.1052
CCCCUACUGACCCUCAAACAAGUUACGC	chr19:57326622-57326917(-)$1	295	139	167	25.0813
GGCACCCAUAAACGCCUUCAUUGGGGGC	chrX:47062041-47062295(+)$1	254	120	148	24.1070
GCUCUCUGCUUUAUUACUUACAGAUUGC	chr7:135304473-135304734(+)$1	261	100	128	24.2500
UAUGAUCCAAAAGUACCUAGGGAACAAA	chr4:39506806-39507065(-)$1	259	136	164	23.9881
UGCAAGGAUUCUCACUUUAAUUUCCUGC	chr14:21867707-21867955(-)$1	248	28	56	22.8464
CCCGGUGCUGGAGGGCUUGAAGGUAAUG	chr4:1823807-1824051(-)$1	244	122	150	23.3633
UAACAAAACACUGAGUUCUAGUUAUGUU	chr5:118860810-118861072(+)$1	262	56	84	23.6356
AUGUUAUUUUAAAAAUAAGCAAUAACGU	chr4:83778004-83778244(-)$1	240	142	170	24.2179
UGGGUGCUCGAGACCAUAGGGAAGUACU	chr7:29983503-29983785(-)$1	282	144	172	23.4102
GCCUGACAUUGACUUAAACUUGAAAGGC	chr11:62291058-62291284(-)$1	226	30	58	23.0903
CCUUCAGCAAAAGAGGUGAGUGUAGGAA	chr6:31750452-31750720(-)$1	268	21	49	23.2201
AGAUCAGGUGUGUGUGUUUUUCUGUCUG	chr11:61081678-61081932(-)$1	254	146	174	23.5920
CAUGCUAGAGAAAGCCAAAGUUAACAUG	chr11:46791412-46791674(-)$1	262	52	80	24.3999
CCUAUGCAGACCAGAUGUUCCUGCUGAA	chr20:33595291-33595532(-)$1	241	136	164	23.6583
UGGACAUAGCACUCUUAAACUGUCCCCU	chr13:53035090-53035483(+)$1	393	27	55	22.7094
GUCAUAGCCACAACCAUGACUGACAGCU	chr17:72859217-72859467(-)$1	250	140	168	21.3020
UAAGCUCUUUCUUUCAAUAUGAGGUCUU	chr2:211476776-211477104(+)$1	328	21	49	23.3028
UGCACAUCCCAACUCUCGAUUUUGUGCC	chr14:24571861-24572083(+)$1	222	116	144	22.2783
CAGAGUACCUCACAGCUUAGACCUGUCC	chrX:53595587-53595801(-)$1	214	120	148	22.1409
GCACUGUCCCCAUCUCUUAAGGCAGUAC	chr17:7127700-7127945(+)$1	245	77	105	23.5774
CACGUCCUCAAAUUAGACAUAGAGGCCU	chr1:39853678-39854058(+)$1	380	343	371	23.8234
CUCUGUUUUGUUUUGGUUUUUGAUAGGA	chr19:5927878-5928199(-)$1	321	75	103	22.5842
CUGGUUGCGAAACAAUUGAAGCAACAUC	chr8:48761952-48762161(-)$1	209	121	149	24.4441
UUCAGCCCCCUCCAGCAUCUAGGGGCUG	chr10:82034803-82035044(-)$1	241	25	53	21.8953
UGUUUUUCAUUUUCUCCAUACAGGACAA	chr2:192246131-192246390(+)$1	259	33	61	24.0514
GUCUCAGCUUCUGUUCCCUUGGCUGGCU	chr16:27539850-27540137(-)$1	287	229	257	22.2292
UGACACAUUUACUAAAUCUUGAUUGUUA	chr17:78109762-78110029(-)$1	267	36	64	24.4386
CUGUUAAUAAAUUCUUUGGGGUUGACAU	chr19:34712423-34712744(+)$1	321	230	258	24.3305
AGCGCCUGCGCGAGGAAGAAGUAGACGC	chr6:43483625-43483934(-)$1	309	183	211	24.2362
GAGGAUCCAGCAAACGAUACAGUGGAUU	chr11:57574286-57574514(+)$1	228	114	142	22.0639
CAGCCGGGCCAGGACCAAAGCCGGUGAU	chr22:42032571-42032845(+)$1	274	162	190	24.0091
GGCCAGGUUGUUGUCCACGGAACCUCUC	chr1:226567522-226567832(-)$1	310	260	288	23.3719
GACAUACUGAUCCCAGCUGCCAGUGAGA	chr10:88820344-88820556(-)$1	212	43	71	24.2143
CUUCUUCGCAGAGGACACAGGCGUGAGG	chr9:96002024-96002298(+)$1	274	44	72	24.6426
CAGCUGAUUCCCAACGUUCAGCAGCUGG	chr9:19050044-19050346(+)$1	302	147	175	19.4803
AUUCUCUCCCCUGCAGUUACGAGAACUG	chr9:127113087-127113358(+)$1	271	12	40	22.9320
UUUGCUGAAUACUUUUCCCAUAAGCUAU	chr16:89595840-89596089(+)$1	249	192	220	22.7623
GCGACAGUGAGCAAAAUGAAAUUCGGAG	chr12:26493116-26493335(-)$1	219	132	160	24.8770
ugaaauauauauuaggucuuuauuucau	chr2:96968848-96969097(-)$1	249	216	244	22.7452
AUGAGGACCAAGGAAAGAAGCCGCAGGA	chr13:76415913-76416215(+)$1	302	10	38	20.8840
CUUAAUCUUCUUAUCUGUCUAGGUUUGG	chr8:11687697-11687918(+)$1	221	33	61	25.0215

#DB
((((.((((............)))).))	chr16:47699752-47700044(+)$1	1	221	249	23.8940
((((((..............))))))))	chr5:72183960-72184221(+)$1	1	172	200	21.7136
))).(((((.............))))).	chr17:7403889-7404154(+)$1	1	120	148	20.9544
(....(((............)))...))	chr3:139077523-139077754(-)$1	1	78	106	24.7405
(((((.((............)).)))))	chr11:62603066-62603342(-)$1	1	57	85	24.0345
(((((((((...........))))).))	chr20:18506944-18507188(+)$1	1	151	179	23.8784
((.((((((............)))).))	chr1:45479480-45479742(+)$1	1	52	80	23.0544
..((((.((..............)).))	chr17:74035654-74035906(-)$1	1	146	174	21.0790
(((((((..............)))).))	chr6:30558242-30558483(+)$1	1	101	129	22.7579
((((...((...........))..))))	chr12:58144956-58145225(-)$1	1	220	248	23.2200
(((((((((............)))))).	chrX:108921164-108921417(-)$1	1	48	76	22.7485
(((.(((((............)))))))	chr3:149089493-149089754(-)$1	1	154	182	23.9062
.(((..((............))....))	chr8:123963813-123964075(+)$1	1	103	131	24.0675
..(((((((............)))))))	chr2:170493317-170493645(+)$1	1	98	126	23.9689
(.(((((((...........)))))..)	chr19:34890362-34890593(+)$1	1	33	61	23.1052
(....(((............)))...))	chr19:57326622-57326917(-)$1	1	139	167	25.0813
(((.((((.............)))).))	chrX:47062041-47062295(+)$1	1	120	148	24.1070
((..((((............))))..))	chr7:135304473-135304734(+)$1	1	100	128	24.2500
(.((.(((............))).)).)	chr4:39506806-39507065(-)$1	1	136	164	23.9881
((((.(((..............))))))	chr14:21867707-21867955(-)$1	1	28	56	22.8464
(.((.((((............)))).))	chr4:1823807-1824051(-)$1	1	122	150	23.3633
.((((.(((...........))).))))	chr5:118860810-118861072(+)$1	1	56	84	23.6356
((((((((............))))))))	chr4:83778004-83778244(-)$1	1	142	170	24.2179
..(((((((...........).))))))	chr7:29983503-29983785(-)$1	1	144	172	23.4102
((((..((............))..))))	chr11:62291058-62291284(-)$1	1	30	58	23.0903
(((((.(((...........)))..)))	chr6:31750452-31750720(-)$1	1	21	49	23.2201
(((.((((............))))))))	chr11:61081678-61081932(-)$1	1	146	174	23.5920
((((.(((............))).))))	chr11:46791412-46791674(-)$1	1	52	80	24.3999
(((..((((...........))))...)	chr20:33595291-33595532(-)$1	1	136	164	23.6583
.(((((..............)))))).)	chr13:53035090-53035483(+)$1	1	27	55	22.7094
((((................))))).))	chr17:72859217-72859467(-)$1	1	140	168	21.3020
((((.((((...........)))).)))	chr2:211476776-211477104(+)$1	1	21	49	23.3028
.(((((................))))))	chr14:24571861-24572083(+)$1	1	116	144	22.2783
(((.((..............))))).))	chrX:53595587-53595801(-)$1	1	120	148	22.1409
(.((((((............)))))).)	chr17:7127700-7127945(+)$1	1	77	105	23.5774
((.(.((((............)))))..	chr1:39853678-39854058(+)$1	1	343	371	23.8234
((((..((.............))..)))	chr19:5927878-5928199(-)$1	1	75	103	22.5842
((((((((............)))))..)	chr8:48761952-48762161(-)$1	1	121	149	24.4441
(((((((((............)))))))	chr10:82034803-82035044(-)$1	1	25	53	21.8953
((((.(((..............))).))	chr2:192246131-192246390(+)$1	1	33	61	24.0514
(((((((((...........))))))..	chr16:27539850-27540137(-)$1	1	229	257	22.2292
(((((.(((...........))))))))	chr17:78109762-78110029(-)$1	1	36	64	24.4386
.(((((((............))))))).	chr19:34712423-34712744(+)$1	1	230	258	24.3305
((((.((((...........)))).)))	chr6:43483625-43483934(-)$1	1	183	211	24.2362
)))((((((.............))))))	chr11:57574286-57574514(+)$1	1	114	142	22.0639
..(((((.............)))))...	chr22:42032571-42032845(+)$1	1	162	190	24.0091
((..(((((...........)))))..)	chr1:226567522-226567832(-)$1	1	260	288	23.3719
..(.(((((...........))))).).	chr10:88820344-88820556(-)$1	1	43	71	24.2143
((((..(((...........))).))))	chr9:96002024-96002298(+)$1	1	44	72	24.6426
((((((...............)))))))	chr9:19050044-19050346(+)$1	1	147	175	19.4803
((((((..............))))).))	chr9:127113087-127113358(+)$1	1	12	40	22.9320
(..(((................))).))	chr16:89595840-89596089(+)$1	1	192	220	22.7623
((..((((............))).)..)	chr12:26493116-26493335(-)$1	1	132	160	24.8770
(((((((.............))))))).	chr2:96968848-96969097(-)$1	1	216	244	22.7452
.((.((..............)).)).))	chr13:76415913-76416215(+)$1	1	10	38	20.8840
(..(((((............))))).))	chr8:11687697-11687918(+)$1	1	33	61	25.0215

#PSSM
d : 0.23	g : 0.12	c : 0.12	f : 0.08	! : 0.07	[ : 0.07	e : 0.05	= : 0.05	" : 0.05	i : 0.05	b : 0.03	a : 0.01	D : 0.01	
d : 0.19	g : 0.14	! : 0.10	c : 0.10	e : 0.08	f : 0.07	[ : 0.07	= : 0.05	b : 0.05	# : 0.03	i : 0.03	D : 0.01	" : 0.01	
d : 0.17	g : 0.16	f : 0.10	e : 0.10	c : 0.08	b : 0.08	! : 0.08	= : 0.05	# : 0.03	[ : 0.03	i : 0.03	a : 0.01	
d : 0.17	g : 0.14	f : 0.12	e : 0.12	[ : 0.10	b : 0.07	! : 0.07	= : 0.05	# : 0.03	c : 0.03	: : 0.01	i : 0.01	a : 0.01	
e : 0.21	[ : 0.16	f : 0.12	g : 0.12	d : 0.10	! : 0.08	b : 0.05	# : 0.03	" : 0.01	i : 0.01	y : 0.01	c : 0.01	a : 0.01	
d : 0.21	e : 0.21	c : 0.14	f : 0.10	g : 0.08	[ : 0.07	! : 0.07	b : 0.03	" : 0.01	i : 0.01	y : 0.01	
d : 0.19	c : 0.19	e : 0.16	w : 0.08	f : 0.08	b : 0.07	g : 0.07	y : 0.05	[ : 0.01	" : 0.01	i : 0.01	x : 0.01	
c : 0.19	d : 0.17	e : 0.14	w : 0.10	b : 0.10	f : 0.08	g : 0.05	y : 0.05	v : 0.03	i : 0.01	x : 0.01	
u : 0.26	w : 0.14	d : 0.12	e : 0.10	v : 0.07	c : 0.07	f : 0.05	y : 0.05	b : 0.03	g : 0.03	a : 0.01	x : 0.01	
u : 0.41	t : 0.24	w : 0.16	v : 0.10	y : 0.05	x : 0.01	
u : 0.41	t : 0.24	w : 0.16	v : 0.10	y : 0.05	x : 0.01	
u : 0.41	t : 0.24	w : 0.16	v : 0.10	y : 0.05	x : 0.01	
u : 0.41	t : 0.24	w : 0.16	v : 0.10	y : 0.05	x : 0.01	
u : 0.41	t : 0.24	w : 0.16	v : 0.10	y : 0.05	x : 0.01	
u : 0.41	t : 0.24	w : 0.16	v : 0.10	y : 0.05	x : 0.01	
u : 0.41	t : 0.24	w : 0.16	v : 0.10	y : 0.05	x : 0.01	
u : 0.41	t : 0.24	w : 0.16	v : 0.10	y : 0.05	x : 0.01	
u : 0.41	t : 0.24	w : 0.16	v : 0.10	y : 0.05	x : 0.01	
u : 0.41	t : 0.24	w : 0.16	v : 0.10	y : 0.05	x : 0.01	
u : 0.41	t : 0.24	w : 0.16	v : 0.10	y : 0.05	x : 0.01	
e : 0.17	c : 0.16	u : 0.14	b : 0.10	d : 0.08	v : 0.07	w : 0.07	f : 0.05	y : 0.03	g : 0.03	i : 0.01	a : 0.01	x : 0.01	
d : 0.19	e : 0.19	c : 0.16	b : 0.12	g : 0.08	f : 0.07	w : 0.05	v : 0.03	y : 0.03	i : 0.01	] : 0.01	
e : 0.23	c : 0.23	d : 0.19	f : 0.10	g : 0.08	] : 0.03	2 : 0.03	w : 0.01	4 : 0.01	i : 0.01	b : 0.01	
e : 0.23	d : 0.19	g : 0.12	f : 0.10	] : 0.08	2 : 0.07	c : 0.07	3 : 0.03	b : 0.03	4 : 0.01	i : 0.01	
e : 0.23	d : 0.16	g : 0.14	f : 0.12	c : 0.07	3 : 0.05	b : 0.05	2 : 0.05	] : 0.03	= : 0.01	4 : 0.01	i : 0.01	a : 0.01	
] : 0.26	f : 0.14	g : 0.14	d : 0.10	2 : 0.08	3 : 0.07	e : 0.05	= : 0.03	a : 0.03	4 : 0.01	b : 0.01	i : 0.01	
d : 0.21	g : 0.14	f : 0.10	c : 0.08	2 : 0.08	e : 0.07	b : 0.07	= : 0.05	] : 0.05	3 : 0.05	i : 0.03	a : 0.01	
d : 0.23	g : 0.12	b : 0.12	c : 0.12	f : 0.08	= : 0.05	: : 0.03	e : 0.03	] : 0.03	i : 0.03	a : 0.03	3 : 0.03	2 : 0.03	

#score	1304.3343111790412
#seq	56
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_UTR_m1_run2.txt

#BEAR
eeeccceeeee[dddd[ccclllccc22ddddeeeee]c	chr17:76122910-76123196(-)$1	286	208	247	11.8891
ii!!==============qqqqqqqq=============	chr16:67263224-67263481(-)$1	257	89	128	11.5120
d[ffffff"""dddd[cccnnnnnccc22dddd333fff	chr11:33279175-33279506(+)$1	331	144	183	13.4049
c"""bb[ggggggg####ccclllccc4444ggggggg]	chr12:49666689-49666938(+)$1	249	82	121	13.6404
ee!!ffffff[a"""cccmmmmccc333a]ffffff22e	chr17:73775397-73775723(-)$1	326	105	144	10.9401
fff[ccc"""eeeee[annnnna]eeeee333ccc]fff	chr17:79878338-79878589(-)$1	251	197	236	11.4196
ccc[dddd!!gggggggbbnnnnnbb]ggggggg]dddd	chr1:183596534-183596802(-)$1	268	104	143	13.4082
f[a[===============nnnnn===============	chr1:1560283-1560561(+)$1	278	20	59	16.1385
bb:dddd[a!!eeeee[ccclllccc22eeeee]a]ddd	chr11:75115083-75115311(+)$1	228	31	70	11.4537
bbbbggggggg"""a!!bbnnnnnbb22aggggggg]bb	chr8:124194937-124195185(+)$1	248	123	162	14.3352
dd!!bb!!eeeee[bb!!bbmmmmbb22bbeeeee333b	chr11:62400452-62400676(-)$1	224	138	177	12.1415
"dddd$$$$$eeeee[cccnnnnnccc]eeeee333ddd	chr16:725956-726265(+)$1	309	88	127	13.1273
$$$$ffffff"""ccc[bbnnnnnbb]ccc]ffffff22	chr19:572520-572802(+)$1	282	164	203	12.9455
iiiii[bb"""ccc!!cccrrrrrrrrrccc]ccc22bb	chr1:6245461-6245687(-)$1	226	111	150	10.9064
ccc[ccc[ggggggg[bboooooobb]ggggggg]cccc	chr6:76311783-76312086(+)$1	303	45	84	14.1615
cc!!ccc"""ccc[ddddnnnnndddd]ccc]ccc]ccc	chr16:1821053-1821341(-)$1	288	1	40	13.2592
dd!!bb!!eeeee[bb!!bbmmmmbb22bbeeeee333b	chr11:62400420-62400652(-)$1	232	114	153	12.1415
[ddddccc[dddd[bb[aooooooabb]ddddccc]ddd	chr19:58898547-58898813(+)$1	266	122	161	11.5865
d$$$$$eeeeedddd[cccooooooccc333dddd22ee	chr11:2965677-2965932(-)$1	255	28	67	12.0277
eeee[a[a!!eeeee[cccnnnnnccceeeee22a]a]e	chr16:1749176-1749421(+)$1	245	50	89	14.0780
$$$ccc[eeeee!!bb[bbnnnnnbb]bb]eeeee]ccc	chr16:3074007-3074300(+)$1	293	36	75	13.7540
====="""bbbb####cccmmmmccc4444bb]bb333=	chr18:56996009-56996232(-)$1	223	84	123	12.0489
d"""bb[bb[ffffff!!aooooooa22ffffff]bb]b	chr12:56498355-56498640(+)$1	285	114	153	11.8724
fffff"""a[eeeeeddddmmmmdddd333eeeee]a33	chr10:103874439-103874671(-)$1	232	176	215	11.3052
c[eeeee####eeeee[bbmmmmbbeeeeeeeeee]ccc	chr12:6879226-6879485(+)$1	259	174	213	11.0440
ff!!ccc!!eeeeea!!bbnnnnnbb22a]eeeee22cc	chr11:124506293-124506539(+)$1	246	156	195	16.2572
##eeeeeccc[dddd!!bbnnnnnbb22dddd333ccc4	chr2:71653837-71654099(+)$1	262	178	217	14.1617
[==========eeeee[bboooooobb]eeeee333===	chr2:97525459-97525712(-)$1	253	176	215	15.1056
eccc[ccc[ccc!!eeeeennnnneeeee22ccc]cccc	chr1:36789253-36789533(+)$1	280	72	111	12.0956
======dddd[bb[bb[bbnnnnnbb]bbbb]dddd22=	chr2:62932886-62933152(+)$1	266	50	89	12.1492
cc####eeeee[ccc[cccnnnnnccc]ccceeeee666	chr17:62499833-62500090(-)$1	257	127	166	13.3006
=====!!ccc!!gggggggnnnnnggggggg]ccc4444	chr17:38286190-38286478(+)$1	288	128	167	14.5443
[bb[eeeee[ccc"""cccnnnnncccccc]eeeee]bb	chr19:14628515-14628761(-)$1	246	61	100	13.4188
f"""eeeee"""ccc[bboooooobbccc]eeeee]fff	chr11:62334186-62334393(-)$1	207	131	170	13.9390
#a!!ffffff####cccooooooccc4444ffffff22a	chr19:6739618-6739892(+)$1	274	151	190	12.7977
"""a[gggggggeeeeecccooooooccc]eeeee22gg	chr5:176737580-176737855(-)$1	275	136	175	12.9646
#bb[ccc[a"""ddddoooooodddd22a]ccc]bb444	chr1:228336383-228336642(+)$1	259	84	123	11.1653
ddggggggg[dddd[ddddoooooodddd]dddd]gggg	chr2:97525527-97525828(-)$1	301	155	194	11.3456
fff[bbccccccbb!!bboooooobb]bb]ccc]ccc22	chr16:88718430-88718690(-)$1	260	151	190	12.0067
ggggggga[cccaccccccmmmmccc4444ccc]a]ccc	chr11:61557156-61557406(-)$1	250	126	165	12.6713
eadddd[ccc!!a[eeeeennnnneeeee]a22ccc]dd	chr2:48025680-48025944(+)$1	264	55	94	11.7852
ggggggccc[ccc[cccccclllccc22ccc]cccccc]	chr2:54197781-54198043(-)$1	262	153	192	13.4415
bggggggg!!a[ffffffaooooooa]ffffff]a22gg	chr2:220085003-220085262(-)$1	259	103	142	12.5187
========="""ccc[cccnnnnncccccc22=======	chr12:49666495-49666738(+)$1	243	87	126	15.8112
##ccciiiiiiiii!!bboooooobb22iiiiiiiii]c	chr1:117910487-117910757(+)$1	270	170	209	15.0302
ee[ccc[iiiiiiiii[ccclllccc22iiiiiiiiicc	chr7:5085429-5085702(+)$1	273	224	263	14.1368
eee"""ggggggg[ddddbbmmmmbb]ddddggggggg4	chr17:79991773-79992024(+)$1	251	117	156	11.2640
===========bb####bbnnnnnbb4444bb22=====	chr17:40852869-40853131(-)$1	262	154	193	15.2769
eeeebb]============4444ccc22ccc333ggggg	chr4:166263867-166264131(+)$1	264	206	245	11.4344
ccc[a[eeeee[ccc[cccnnnnnccc]ccc22eeeee]	chr3:122785876-122786221(+)$1	345	156	195	13.7430
e!!============[cccmmmmccc22===========	chrX:153237072-153237327(-)$1	255	125	164	14.9518
eeee!!ccc!!dddd[bboooooobb]dddd22ccc22e	chr6:44081132-44081397(-)$1	265	24	63	12.7856
dda[ggggggg[dddd[bbnnnnnbbddddggggggg]a	chr9:139904710-139904981(-)$1	271	203	242	13.9987
"bb[ccc[ffffffcccddddllldddd4444ccc333f	chr1:206906145-206906392(+)$1	247	31	70	11.1456
gg[ccc!!bb!!ccc!!bblllbb22ccc4444bb22cc	chr7:66105849-66106114(+)$1	265	23	62	11.1437
=========eeeeeeeeeennnnneeeee]eeeeedddd	chr12:6862110-6862377(-)$1	267	92	131	12.7077
eeee[a"""ccc[eeeeeannnnna]eeeee]cccaeee	chr19:19021694-19021908(-)$1	214	28	67	12.3622
c"""bb[ggggggg####ccclllccc4444ggggggg]	chr12:49666616-49666866(+)$1	250	155	194	13.6404
bb!!ccc[eeeee####bboooooobb]eeeeeccc]bb	chr1:43309558-43309811(+)$1	253	91	130	13.4538

#otherMatches

#Seq PSSM
GAUGGGGGCUCCGGAGGUGGCGCCCAGGCUCUGAGCUAC	chr17:76122910-76123196(-)$1	286	208	247	11.8891
gugaguguguguguaugugugugugugcaugcauaugca	chr16:67263224-67263481(-)$1	257	89	128	11.5120
UGGUGCCGCCUGCUGAAGCGCCUGGCUCCCGGUCCCCGG	chr11:33279175-33279506(+)$1	331	144	183	13.4049
UACAGAGAGCUGUGUGCAUGCUGAGCAAUACCACAGCUG	chr12:49666689-49666938(+)$1	249	82	121	13.6404
GGGGCCGGGAGGUUUCCCCUUGGGGCUUUGUUCCGGAAC	chr17:73775397-73775723(-)$1	326	105	144	10.9401
CCCUGUGUCUGGCCAUGUGAGCCCUGGCCUUUCACCGGG	chr17:79878338-79878589(-)$1	251	197	236	11.4196
UUCGUGUCUUGACUGCAAGAAAAACUGUGUAGUCUGGCA	chr1:183596534-183596802(-)$1	268	104	143	13.4082
GGUCAGGGCUGGGCUGUGGCUGGCUCAUGGCUCAGCCUU	chr1:1560283-1560561(+)$1	278	20	59	16.1385
CGAGGUUGUGGUGUCUGGGAAACUCCGAGGACAGAGGGC	chr11:75115083-75115311(+)$1	228	31	70	11.4537
GCCAGCCUCCCCCAGCACCACCCAGGGACGGGAGGCAUG	chr8:124194937-124195185(+)$1	248	123	162	14.3352
GGCAUGGAGCAUGUCUAUGGGAUCCCUGAGCAUGCAGAC	chr11:62400452-62400676(-)$1	224	138	177	12.1415
ggagggagggagggcgggCAGCUGGCUGGUCUUGGACCU	chr16:725956-726265(+)$1	309	88	127	13.1273
CGGAGCCUCCGGGGCUGGUGAGGAGCGGGUAGGGGGCGG	chr19:572520-572802(+)$1	282	164	203	12.9455
AGUCCUACCUUGGCUCCCAUUAAACAUUUGGUGCUCUGU	chr1:6245461-6245687(-)$1	226	111	150	10.9064
GGACGAAGGGAGGCGUGUUUGUGUGCUCGCUUUCAUUCU	chr6:76311783-76312086(+)$1	303	45	84	14.1615
GAGAUUGUGCGGCGCUUCGAGAGGAAGGGCUUCAAGUUG	chr16:1821053-1821341(-)$1	288	1	40	13.2592
GGCAUGGAGCAUGUCUAUGGGAUCCCUGAGCAUGCAGAC	chr11:62400420-62400652(-)$1	232	114	153	12.1415
ACGCCGAGUGACAGAGACGCUCAGGCUGUGUUCUCAGGU	chr19:58898547-58898813(+)$1	266	122	161	11.5865
GGGCCCCACCAUUCAUCCUGUCUGAAGGUCCUGGGUUUG	chr11:2965677-2965932(-)$1	255	28	67	12.0277
UCAUGUGUAGUCCAGGUUUGAGAGGAACUGGAAGGGGGG	chr16:1749176-1749421(+)$1	245	50	89	14.0780
GAGGUUCUGCGCGGGCGCGGAAGACGGGCGGCGCGUGGC	chr16:3074007-3074300(+)$1	293	36	75	13.7540
UGUGUCUAUGAUGCCACUUUUAAAAGGAAAAUGCAAUUG	chr18:56996009-56996232(-)$1	223	84	123	12.0489
AGAGGCGGCGGCGGCUCAGGGGAAACGAGGCUGCAGUGG	chr12:56498355-56498640(+)$1	285	114	153	11.8724
ggagcagCCAUUGUUGAGGGAAACCUUGCAAACAAAGAA	chr10:103874439-103874671(-)$1	232	176	215	11.3052
UGGGCCUGAGGGGCUGUCAGGGAUGCAGCCGGGCUGGGC	chr12:6879226-6879485(+)$1	259	174	213	11.0440
UAUAAAGAACACAUGAACACUAGCuggccuauguggccu	chr11:124506293-124506539(+)$1	246	156	195	16.2572
GAUCUCCUCAAACAGGAACGCUUGGUAACUGUGGAUGAA	chr2:71653837-71654099(+)$1	262	178	217	14.1617
AUUUAUUUGUUGUAAAUAUUUGAGUAUUUUUAUAUUGAC	chr2:97525459-97525712(-)$1	253	176	215	15.1056
cgggaggagggAGAGCCCGGCCCGCGGGCCGUCCGUCCC	chr1:36789253-36789533(+)$1	280	72	111	12.0956
GGCAGGGCUUGGUAGGGUGGGGGACGGUCGCGGGGCGAU	chr2:62932886-62933152(+)$1	266	50	89	12.1492
CAUCAAUCAUCAGCCAUUCCUAGAGAGAGGCGAUGGGCC	chr17:62499833-62500090(-)$1	257	127	166	13.3006
GGAGCCAGCUUGGGGUGGGGAAUUUUCACCUGGGCCUCC	chr17:38286190-38286478(+)$1	288	128	167	14.5443
GCGGCCCCGAGCAGCCCCGGGGUGCGGUGCAUGGGGGUG	chr19:14628515-14628761(-)$1	246	61	100	13.4188
GGUGGAGGGUGUGGGACCAAAGAAGGCCUGUUCUCACCU	chr11:62334186-62334393(-)$1	207	131	170	13.9390
AGCAUGGAUUGGGGCACUGAGCUGUGGGUAAGUCCAAUC	chr19:6739618-6739892(+)$1	274	151	190	12.7977
CAUCCUCUCUGGCAUUGGCAGGUCAGUGCACAAUGAACU	chr5:176737580-176737855(-)$1	275	136	175	12.9646
GGCAGGCGAUACGGCAGCUCUGUGCCCUUGGCCAGCAUG	chr1:228336383-228336642(+)$1	259	84	123	11.1653
CUUCUUCCUGUACAGGGCUGGGAAAGGCUGUGUGAGGGG	chr2:97525527-97525828(-)$1	301	155	194	11.3456
GCCUCCUUGGGCCUCAGGAAACCACCAAGUGCCUCGGAU	chr16:88718430-88718690(-)$1	260	151	190	12.0067
GCAUCUACGUGUGAGCACCCAAGGGUAAGAGCUGCAAUG	chr11:61557156-61557406(-)$1	250	126	165	12.6713
UCCUUGCCUGGCAGGUAGGCACAACUUACGUAACAGAUA	chr2:48025680-48025944(+)$1	264	55	94	11.7852
Agcccccggagccgggcgggcgucccgagccgggcccgc	chr2:54197781-54198043(-)$1	262	153	192	13.4415
AGCAGGGUUCCUGUGGCCCAGGAUGGAGGCCACCGCUGC	chr2:220085003-220085262(-)$1	259	103	142	12.5187
GCCAUGGUAAAUACAUGGCUUGCUGCCUGUUAUACCGUG	chr12:49666495-49666738(+)$1	243	87	126	15.8112
CGUGCCCUCUUAAAAAGCACAACAGUCCUUUAAGAGGAG	chr1:117910487-117910757(+)$1	270	170	209	15.0302
GGGUGGAGGCUUGAGCGGGGACCCCCGAGCUUGAGCCCC	chr7:5085429-5085702(+)$1	273	224	263	14.1368
CUCCAGCCUUCCCUGGCCCCCGCCGGAGGCCGGGAGGGA	chr17:79991773-79992024(+)$1	251	117	156	11.2640
CCGCUUCUUCCCACUCCACUUGUUGUCCCAUGAAGGAAG	chr17:40852869-40853131(-)$1	262	154	193	15.2769
UUAAAAAUUGAGGAGCUUUAUUUCUAUUUACCCUUCCAU	chr4:166263867-166264131(+)$1	264	206	245	11.4344
UGGCUGCUGCUGGCAAUCUGGGUGAGACUGUGGGGCAGG	chr3:122785876-122786221(+)$1	345	156	195	13.7430
GUUGCCGCUUCGGGGCCUAACUCUAGCUCUUUGAAGCGG	chrX:153237072-153237327(-)$1	255	125	164	14.9518
AAGGUGGCUUACCCGAGUCUGGCCACACGGGGUAGCAUU	chr6:44081132-44081397(-)$1	265	24	63	12.7856
CUGUGCCUGGGUGUGCGUCCUGGCGAGUGCUUCGGGCUC	chr9:139904710-139904981(-)$1	271	203	242	13.9987
UGGAGCCUGGAACUGCAUCAGUGACUGAAUUCUGCCUUG	chr1:206906145-206906392(+)$1	247	31	70	11.1456
UUACAGGACCAGAUAGACAAGAUGGGUAUAAGGGGAGCU	chr7:66105849-66106114(+)$1	265	23	62	11.1437
GGUUCGGGCUCCGUUGGCCGAGGGGGCCGUACGGAGGUG	chr12:6862110-6862377(-)$1	267	92	131	12.7077
AGGAAGUUCGGUGUGGUCCUGGAUGAGAUCAAGCCCUCC	chr19:19021694-19021908(-)$1	214	28	67	12.3622
UACAGAGAGCUGUGUGCAUGCUGAGCAAUACCACAGCUG	chr12:49666616-49666866(+)$1	250	155	194	13.6404
UGUUGCCCUCUGACCUUGGCCCAGACCUUCAGAGGCUCA	chr1:43309558-43309811(+)$1	253	91	130	13.4538

#DB
(((((((((((.((((.(((...)))..))))))))).)	chr17:76122910-76123196(-)$1	1	208	247	11.8891
((..((((((((((((((........)))))))))))))	chr16:67263224-67263481(-)$1	1	89	128	11.5120
(.((((((...((((.(((.....)))..))))...)))	chr11:33279175-33279506(+)$1	1	144	183	13.4049
(...((.(((((((....(((...)))....))))))).	chr12:49666689-49666938(+)$1	1	82	121	13.6404
((..((((((.(...(((....)))...).))))))..)	chr17:73775397-73775723(-)$1	1	105	144	10.9401
(((.(((...(((((.(.....).)))))...))).)))	chr17:79878338-79878589(-)$1	1	197	236	11.4196
(((.((((..(((((((((.....)).))))))).))))	chr1:183596534-183596802(-)$1	1	104	143	13.4082
(.(.(((((((((((((((.....)))))))))))))))	chr1:1560283-1560561(+)$1	1	20	59	16.1385
)).((((.(..(((((.(((...)))..))))).).)))	chr11:75115083-75115311(+)$1	1	31	70	11.4537
(((((((((((...(..((.....))..)))))))).))	chr8:124194937-124195185(+)$1	1	123	162	14.3352
((..((..(((((.((..((....))..)))))))...)	chr11:62400452-62400676(-)$1	1	138	177	12.1415
.((((.....(((((.(((.....))).)))))...)))	chr16:725956-726265(+)$1	1	88	127	13.1273
....((((((...(((.((.....)).))).))))))..	chr19:572520-572802(+)$1	1	164	203	12.9455
(((((.((...(((..(((.........))).)))..))	chr1:6245461-6245687(-)$1	1	111	150	10.9064
(((.(((.(((((((.((......)).))))))).))))	chr6:76311783-76312086(+)$1	1	45	84	14.1615
((..(((...(((.((((.....)))).))).))).)))	chr16:1821053-1821341(-)$1	1	1	40	13.2592
((..((..(((((.((..((....))..)))))))...)	chr11:62400420-62400652(-)$1	1	114	153	12.1415
.(((((((.((((.((.(......))).))))))).)))	chr19:58898547-58898813(+)$1	1	122	161	11.5865
(.....(((((((((.(((......)))...))))..))	chr11:2965677-2965932(-)$1	1	28	67	12.0277
((((.(.(..(((((.(((.....))))))))..).).)	chr16:1749176-1749421(+)$1	1	50	89	14.0780
...(((.(((((..((.((.....)).)).))))).)))	chr16:3074007-3074300(+)$1	1	36	75	13.7540
(((((...((((....(((....)))....)).))...)	chr18:56996009-56996232(-)$1	1	84	123	12.0489
(...((.((.((((((..(......)..)))))).)).)	chr12:56498355-56498640(+)$1	1	114	153	11.8724
(((((...(.(((((((((....))))...))))).)..	chr10:103874439-103874671(-)$1	1	176	215	11.3052
(.(((((....(((((.((....)))))))))))).)))	chr12:6879226-6879485(+)$1	1	174	213	11.0440
((..(((..((((((..((.....))..).)))))..))	chr11:124506293-124506539(+)$1	1	156	195	16.2572
..((((((((.((((..((.....))..))))...))).	chr2:71653837-71654099(+)$1	1	178	217	14.1617
.(((((((((((((((.((......)).)))))...)))	chr2:97525459-97525712(-)$1	1	176	215	15.1056
)(((.(((.(((..(((((.....)))))..))).))))	chr1:36789253-36789533(+)$1	1	72	111	12.0956
((((((((((.((.((.((.....)).)))).))))..)	chr2:62932886-62933152(+)$1	1	50	89	12.1492
((....(((((.(((.(((.....))).))))))))...	chr17:62499833-62500090(-)$1	1	127	166	13.3006
(((((..(((..(((((((.....))))))).)))....	chr17:38286190-38286478(+)$1	1	128	167	14.5443
.((.(((((.(((...(((.....)))))).))))).))	chr19:14628515-14628761(-)$1	1	61	100	13.4188
(...(((((...(((.((......))))).))))).)))	chr11:62334186-62334393(-)$1	1	131	170	13.9390
.(..((((((....(((......)))....))))))..)	chr19:6739618-6739892(+)$1	1	151	190	12.7977
...(.(((((((((((((((......))).)))))..))	chr5:176737580-176737855(-)$1	1	136	175	12.9646
.((.(((.(...((((......))))..).))).))...	chr1:228336383-228336642(+)$1	1	84	123	11.1653
))(((((((.((((.((((......)))).)))).))))	chr2:97525527-97525828(-)$1	1	155	194	11.3456
(((.((((((((((..((......)).)).))).)))..	chr16:88718430-88718690(-)$1	1	151	190	12.0067
((((((((.((((((((((....)))....))).).)))	chr11:61557156-61557406(-)$1	1	126	165	12.6713
((((((.(((..(.(((((.....))))).)..))).))	chr2:48025680-48025944(+)$1	1	55	94	11.7852
(((((((((.(((.((((((...)))..))).)))))).	chr2:54197781-54198043(-)$1	1	153	192	13.4415
((((((((..(.(((((((......).)))))).)..))	chr2:220085003-220085262(-)$1	1	103	142	12.5187
(((((((((...(((.(((.....))))))..)))))))	chr12:49666495-49666738(+)$1	1	87	126	15.8112
..((((((((((((..((......))..))))))))).)	chr1:117910487-117910757(+)$1	1	170	209	15.0302
((.(((.(((((((((.(((...)))..)))))))))))	chr7:5085429-5085702(+)$1	1	224	263	14.1368
(((...(((((((.((((((....)).))))))))))).	chr17:79991773-79992024(+)$1	1	117	156	11.2640
(((((((((((((....((.....))....))..)))))	chr17:40852869-40853131(-)$1	1	154	193	15.2769
)))))).))))))))))))....)))..)))...)))))	chr4:166263867-166264131(+)$1	1	206	245	11.4344
(((.(.(((((.(((.(((.....))).)))..))))).	chr3:122785876-122786221(+)$1	1	156	195	13.7430
(..((((((((((((.(((....)))..)))))))))))	chrX:153237072-153237327(-)$1	1	125	164	14.9518
((((..(((..((((.((......)).))))..)))..)	chr6:44081132-44081397(-)$1	1	24	63	12.7856
(((.(((((((.((((.((.....))))))))))))).)	chr9:139904710-139904981(-)$1	1	203	242	13.9987
.((.(((.(((((((((((((...))))....)))...)	chr1:206906145-206906392(+)$1	1	31	70	11.1456
((.(((..((..(((..((...))..)))....))..))	chr7:66105849-66106114(+)$1	1	23	62	11.1437
)))))))))((((((((((.....))))).)))))((((	chr12:6862110-6862377(-)$1	1	92	131	12.7077
((((.(...(((.((((((.....).))))).)))))))	chr19:19021694-19021908(-)$1	1	28	67	12.3622
(...((.(((((((....(((...)))....))))))).	chr12:49666616-49666866(+)$1	1	155	194	13.6404
((..(((.(((((....((......)).)))))))).))	chr1:43309558-43309811(+)$1	1	91	130	13.4538

#PSSM
e : 0.18	c : 0.13	d : 0.11	f : 0.10	= : 0.10	b : 0.06	# : 0.06	" : 0.05	[ : 0.05	g : 0.05	i : 0.03	$ : 0.03	
e : 0.13	= : 0.11	c : 0.10	b : 0.10	d : 0.10	" : 0.08	f : 0.06	g : 0.06	[ : 0.05	$ : 0.05	i : 0.03	# : 0.03	a : 0.03	! : 0.01	
! : 0.15	e : 0.13	= : 0.11	" : 0.08	c : 0.08	f : 0.06	b : 0.06	g : 0.06	d : 0.05	$ : 0.05	a : 0.03	[ : 0.03	: : 0.01	i : 0.01	# : 0.01	
[ : 0.16	! : 0.13	= : 0.13	c : 0.10	e : 0.10	" : 0.08	d : 0.06	g : 0.06	f : 0.03	$ : 0.03	b : 0.01	i : 0.01	# : 0.01	a : 0.01	
c : 0.20	= : 0.16	b : 0.11	g : 0.10	f : 0.08	d : 0.08	[ : 0.06	e : 0.06	i : 0.01	$ : 0.01	# : 0.01	" : 0.01	a : 0.01	! : 0.01	
c : 0.22	= : 0.13	b : 0.11	g : 0.11	f : 0.06	e : 0.06	d : 0.05	" : 0.05	$ : 0.03	[ : 0.03	a : 0.03	! : 0.03	# : 0.01	i : 0.01	
c : 0.20	e : 0.13	= : 0.11	[ : 0.11	g : 0.11	f : 0.06	! : 0.06	d : 0.05	" : 0.05	$ : 0.01	b : 0.01	i : 0.01	] : 0.01	
= : 0.13	g : 0.13	c : 0.13	e : 0.11	" : 0.08	[ : 0.08	f : 0.06	! : 0.06	d : 0.03	b : 0.03	a : 0.03	i : 0.03	$ : 0.01	# : 0.01	
e : 0.16	= : 0.13	g : 0.13	c : 0.10	" : 0.08	f : 0.06	! : 0.06	a : 0.05	[ : 0.05	b : 0.05	i : 0.03	$ : 0.01	# : 0.01	d : 0.01	
e : 0.16	" : 0.11	g : 0.11	c : 0.11	= : 0.10	! : 0.08	[ : 0.08	f : 0.06	d : 0.03	b : 0.03	i : 0.03	$ : 0.01	# : 0.01	
e : 0.23	g : 0.13	c : 0.11	= : 0.10	" : 0.10	! : 0.08	[ : 0.05	d : 0.03	f : 0.03	# : 0.03	i : 0.03	b : 0.01	a : 0.01	
e : 0.22	c : 0.13	d : 0.10	g : 0.10	[ : 0.08	" : 0.08	= : 0.06	b : 0.05	! : 0.05	f : 0.03	i : 0.03	a : 0.01	# : 0.01	
e : 0.22	d : 0.15	c : 0.15	g : 0.10	= : 0.06	" : 0.05	f : 0.05	b : 0.05	! : 0.03	# : 0.03	a : 0.03	i : 0.03	[ : 0.01	
e : 0.18	d : 0.13	[ : 0.13	c : 0.13	g : 0.08	= : 0.06	# : 0.06	" : 0.05	f : 0.05	! : 0.03	i : 0.03	b : 0.01	
e : 0.20	c : 0.16	d : 0.15	# : 0.08	b : 0.08	= : 0.06	g : 0.05	! : 0.05	" : 0.03	a : 0.03	f : 0.03	[ : 0.01	i : 0.01	
[ : 0.20	e : 0.13	d : 0.11	! : 0.11	c : 0.10	# : 0.08	b : 0.08	= : 0.05	g : 0.03	f : 0.03	" : 0.01	i : 0.01	
c : 0.27	[ : 0.16	! : 0.11	b : 0.08	e : 0.08	# : 0.06	d : 0.06	= : 0.05	g : 0.03	a : 0.01	o : 0.01	f : 0.01	
c : 0.30	b : 0.30	d : 0.08	e : 0.06	= : 0.05	! : 0.05	# : 0.03	o : 0.03	n : 0.01	a : 0.01	g : 0.01	f : 0.01	
c : 0.32	b : 0.27	o : 0.13	a : 0.05	d : 0.05	e : 0.05	n : 0.03	= : 0.03	q : 0.01	m : 0.01	g : 0.01	
n : 0.40	o : 0.23	c : 0.11	m : 0.10	b : 0.05	q : 0.01	r : 0.01	4 : 0.01	d : 0.01	l : 0.01	
n : 0.40	o : 0.25	m : 0.15	l : 0.08	c : 0.03	q : 0.01	r : 0.01	4 : 0.01	d : 0.01	
n : 0.40	o : 0.25	m : 0.15	l : 0.13	q : 0.01	r : 0.01	4 : 0.01	
n : 0.38	o : 0.23	m : 0.13	l : 0.11	q : 0.01	c : 0.01	a : 0.01	r : 0.01	d : 0.01	4 : 0.01	b : 0.01	
n : 0.37	o : 0.22	c : 0.16	l : 0.05	m : 0.05	d : 0.05	b : 0.03	q : 0.01	] : 0.01	r : 0.01	
c : 0.32	b : 0.30	o : 0.11	e : 0.06	d : 0.06	a : 0.03	q : 0.01	= : 0.01	r : 0.01	g : 0.01	2 : 0.01	
b : 0.33	c : 0.32	e : 0.08	d : 0.08	a : 0.03	q : 0.01	3 : 0.01	= : 0.01	r : 0.01	g : 0.01	o : 0.01	2 : 0.01	] : 0.01	
2 : 0.23	c : 0.22	] : 0.15	e : 0.10	d : 0.08	4 : 0.06	b : 0.05	= : 0.03	3 : 0.01	r : 0.01	g : 0.01	
2 : 0.25	e : 0.11	] : 0.11	c : 0.11	4 : 0.10	d : 0.08	g : 0.05	b : 0.05	= : 0.03	3 : 0.03	r : 0.01	f : 0.01	
c : 0.20	e : 0.18	d : 0.11	4 : 0.11	b : 0.08	a : 0.06	= : 0.05	g : 0.05	3 : 0.03	f : 0.03	i : 0.03	2 : 0.01	
] : 0.16	c : 0.15	4 : 0.13	d : 0.11	e : 0.11	g : 0.06	= : 0.05	3 : 0.05	b : 0.05	f : 0.03	i : 0.03	2 : 0.01	
e : 0.25	c : 0.15	d : 0.11	g : 0.08	4 : 0.06	f : 0.06	= : 0.05	b : 0.05	3 : 0.03	] : 0.03	2 : 0.03	i : 0.03	a : 0.01	
e : 0.27	g : 0.11	d : 0.10	] : 0.10	f : 0.08	c : 0.06	2 : 0.06	= : 0.05	3 : 0.03	b : 0.03	i : 0.03	4 : 0.03	
e : 0.27	c : 0.20	g : 0.11	f : 0.08	2 : 0.08	= : 0.06	d : 0.06	3 : 0.03	i : 0.03	] : 0.01	4 : 0.01	
e : 0.22	c : 0.20	g : 0.11	3 : 0.08	] : 0.08	= : 0.06	f : 0.06	d : 0.05	2 : 0.03	b : 0.03	i : 0.03	
e : 0.22	c : 0.20	g : 0.10	= : 0.08	] : 0.08	3 : 0.06	a : 0.06	f : 0.05	b : 0.05	d : 0.03	i : 0.03	
] : 0.16	c : 0.13	3 : 0.11	g : 0.11	2 : 0.10	= : 0.08	e : 0.06	f : 0.05	d : 0.05	b : 0.03	i : 0.03	4 : 0.01	a : 0.01	
2 : 0.16	c : 0.15	= : 0.10	g : 0.10	d : 0.08	f : 0.06	] : 0.06	3 : 0.06	e : 0.05	a : 0.03	4 : 0.03	i : 0.03	b : 0.01	6 : 0.01	
c : 0.18	g : 0.11	= : 0.10	2 : 0.10	d : 0.10	] : 0.08	3 : 0.08	b : 0.06	f : 0.05	e : 0.05	4 : 0.03	6 : 0.01	
c : 0.18	= : 0.13	b : 0.11	d : 0.10	e : 0.08	f : 0.06	] : 0.06	4 : 0.06	g : 0.06	2 : 0.03	a : 0.03	3 : 0.01	6 : 0.01	

#score	763.0992047749828
#seq	59
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_UTR_m2_run1.txt

#BEAR
:dddd[ccc"""ffffffooooooffffffccc]dddd	chrX:153582746-153582951(-)$1	205	119	157	10.4964
eee!!ccc[ccc[cccnnnnnccc]cccccceeeee44	chrX:153582299-153582510(-)$1	211	18	56	10.4046
ee!!dddd[dddd[acccooooooccc22a]dddd]dd	chrX:153587374-153587592(-)$1	218	86	124	13.6091
ffffffa"""bb[cccnnnnncccbb333a]ffffff]	chr1:19444288-19444504(-)$1	216	131	169	10.4615
!dddd[ccc[bb"""bboooooobb4444bb]cccddd	chrX:153587753-153587968(-)$1	215	98	136	13.3026
ccc[dddd[dddd[bboooooobb]dddd]dddd]ccc	chrX:153586614-153586823(-)$1	209	167	205	10.9670
HHggggggg[a[fffffflllffffff22a]ggggggg	chrX:153587751-153587953(-)$1	202	126	164	10.3504
HHggggggg[a[fffffflllffffff22a]ggggggg	chrX:153587646-153587868(-)$1	222	41	79	10.3504
cc[eeeee!!ddddddddnnnnndddd]dddd4444ee	chrX:153581306-153581564(-)$1	258	65	103	11.0282
ciiiiiiiii!!cccrrrrrrrrrccc22iiiiiiiii	chr1:19430528-19430778(-)$1	250	54	92	12.8368
cc[eeeee[eeeee!!ddddllldddd22eeeee]eee	chrX:153586741-153586982(-)$1	241	159	197	11.4473
fbbccc!!eeeeeddddoooooodddd22eeeee22cc	chrX:153587848-153588096(-)$1	248	22	60	14.3328
ffffffeeeee[a!!cccooooooccc22a]eeeeedd	chr16:8994315-8994574(-)$1	259	101	139	13.9108
!eeeee"""eeeee[bboooooobb]eeeeeeeeee22	chr8:48874511-48874773(+)$1	262	196	234	12.4628
fbbccc!!eeeeeddddoooooodddd22eeeee22cc	chrX:153587999-153588209(-)$1	210	135	173	14.3328
cggggggg[bb!!bb[aooooooa]bb22bb]gggggg	chrX:153582182-153582390(-)$1	208	72	110	15.1946
[ggggggg[a[eeeeeooooooeeeee333a]gggggg	chr1:52260081-52260381(-)$1	300	27	65	14.9504
ddd]cccffffffddddoooooodddd]ffffffbb!!	chr9:95027191-95027439(-)$1	248	161	199	11.6055
ddd####eeeee"""bboooooobb333eeeee333dd	chr5:154172216-154172456(+)$1	240	165	203	13.2088
cffffff"""bb!!bbrrrrrrrrrbb22bb333ffff	chrX:153582537-153582758(-)$1	221	30	68	10.9649
dddd!!iiiiiiiiirrrrrrrrriiiiiiiii]dddd	chrX:41204335-41204654(+)$1	319	251	289	10.3543
ee$$$$$eeeee!!cccooooooccc22eeeee4444e	chr2:54135390-54135653(-)$1	263	30	68	13.6077
eeeee!!==========oooooo==========eeeee	chr3:184045517-184045763(+)$1	246	203	241	14.9807
dddd[bbdddd!!bbcccooooooccc]bb]dddd333	chr19:34949647-34949902(+)$1	255	108	146	11.9258
eeeeeccc[bb[a[aooooooaa]bbccc]eeeeeddd	chrX:153581429-153581668(-)$1	239	106	144	11.6785
biiiiiiiiibbeeeeeooooooeeeee]bb22iiiii	chrX:153581824-153582040(-)$1	216	100	138	14.2143
eeee[a[dddd!!ddddnnnnndddd]dddd]a]eeee	chrX:153588477-153588699(-)$1	222	83	121	11.3568
[iiiiiiiiibbeeeeeooooooeeeee]bb22iiiii	chrX:153581840-153582064(-)$1	224	124	162	14.4350
bba!!bb!!ccc[bboooooobb]ccc22bb22a]bb]	chrX:153588103-153588322(-)$1	219	39	77	10.9323
:ggggggg[bb!!ddddoooooodddd22bbggggggg	chr3:47770462-47770684(-)$1	222	138	176	15.7004
ooccc::dddd"""cccooooooccc]ddddffffff[	chr8:124357033-124357328(-)$1	295	139	177	10.8740
b"""ffffff####cccooooooccc4444ffffff33	chr2:61715622-61715875(-)$1	253	41	79	14.5183
===================rrrrrrrrr==========	chr3:184045616-184045869(+)$1	253	128	166	10.9364
gggggg$$$$$eeeeeddddllldddd22eeeee333g	chr1:19438936-19439184(-)$1	248	168	206	11.3790
iiiiii[ffffff[cccoooooocccffffff4444ii	chr3:184046322-184046643(+)$1	321	156	194	13.4419
c$$$$$ddddeeeee[aooooooa]eeeee]dddd22c	chrX:153586473-153586712(-)$1	239	103	141	11.3944
fff!!gggggggeeeeeooooooeeeee]ggggggg22	chr18:2775708-2775984(+)$1	276	222	260	14.0613
d[ccc[bb"""ffffffooooooffffffbb]ccc]dd	chr2:48030463-48030718(+)$1	255	186	224	12.2904
bb!!cccccc!!eeeeeooooooeeeee]ccc]ccc22	chr3:184040552-184040830(+)$1	278	153	191	13.7655
:ffffff"""a!!ddddnnnnndddd22a333ffffff	chrX:153590511-153590744(-)$1	233	78	116	11.3132
[a[hhhhhhhh"""cccooooooccchhhhhhhh]add	chr6:37142744-37142987(+)$1	243	144	182	12.1511
eeeee!!ccc[ccc[cccnnnnnccc]cccccceeeee	chrX:153582233-153582499(-)$1	266	5	43	10.8296
[ggggggg[bb"""ddddmmmmdddd4444bbgggggg	chrX:153580650-153580909(-)$1	259	45	83	11.6303
"cccdddd[ggggggg[bboooooobb22ggggggg]d	chr3:184040918-184041129(+)$1	211	67	105	11.2728
!!ffffff!!bb####ddddllldddd22bb]ffffff	chr3:9512269-9512566(+)$1	297	70	108	11.1741
eeee[a[dddd!!ddddnnnnndddd]dddd]a]eeee	chrX:153588436-153588652(-)$1	216	36	74	11.3568
H:eeeee"""bb!!cccooooooccc22bb333eeeee	chr17:57738786-57739067(+)$1	281	200	238	13.6098
gggggggbb####ddddoooooodddd666666bb]gg	chr9:95033719-95034012(-)$1	293	155	193	11.7165
bb!!eeeee####ddddooooooddddeeeee22bbcc	chr6:161512961-161513276(+)$1	315	38	76	13.3982
"""dddd!!dddd[aooooooa]dddd333dddd]ggg	chrX:153586536-153586791(-)$1	255	107	145	12.8797
d"""eeeee[a[eeeeeooooooeeeee]a]eeeee33	chrX:153588805-153589040(-)$1	235	93	131	14.4677
[iiiiiiiiibbeeeeeooooooeeeee]bb22iiiii	chrX:153581822-153582024(-)$1	202	84	122	14.4350
:ggggggg[cccddddddddllldddd22dddd>>>>>	chr9:123201816-123202066(-)$1	250	133	171	9.7267
eeee[a[dddd!!ddddnnnnndddd]dddd]a]eeee	chrX:153588537-153588762(-)$1	225	146	184	11.3568

#otherMatches

#Seq PSSM
UGGGUGUCAAUGGGCUGGAUGUGACCAGCCUGAGGCCC	chrX:153582746-153582951(-)$1	205	119	157	10.4964
CCACCGCCACCACCUCACAGAGAGAUGGGGCUGGGGGA	chrX:153582299-153582510(-)$1	211	18	56	10.4046
CCCUGUGCAUGAUGUGACAGAUGCGUCCAAGGUCAAGU	chrX:153587374-153587592(-)$1	218	86	124	13.6091
UAUUACCUGGAGAGCGAUCCCUGCCUGGUGUGUAAUAA	chr1:19444288-19444504(-)$1	216	131	169	10.4615
AGUUCACUGUGGAGACCAGGUAAGGGAGCCCCCAGGAG	chrX:153587753-153587968(-)$1	215	98	136	13.3026
AACACCACUGGCGUGCCUGCCAGCCUGCCCGUGGAGUU	chrX:153586614-153586823(-)$1	209	167	205	10.9670
GUGGCUGGUGGGCCUGGGAACCCCAGGAAUGACCGGCU	chrX:153587751-153587953(-)$1	202	126	164	10.3504
GUGGCUGGUGGGCCUGGGAACCCCAGGAAUGACCGGCU	chrX:153587646-153587868(-)$1	222	41	79	10.3504
CAGCCCCAUCCCGGUGGUGAUCAGCCAGUCGGAAAUUG	chrX:153581306-153581564(-)$1	258	65	103	11.0282
AAUCCAUCAAAAGACAUUUUAAAAGUCGCUUGGUGGGU	chr1:19430528-19430778(-)$1	250	54	92	12.8368
GUACCCCGGAGGUAAGAGGCAGGGCCUGCUGCCUGUGG	chrX:153586741-153586982(-)$1	241	159	197	11.4473
UGGCAGACGGGGUGGGUGGGGUGGCCCGGGCUCCUCCU	chrX:153587848-153588096(-)$1	248	22	60	14.3328
UUUAACAGAGAGAAUUCAGGACUAUGACGUGUCUCUUG	chr16:8994315-8994574(-)$1	259	101	139	13.9108
CCUGUGAGACAGAGGCCUGACCUGGGCUCUGCACAGAA	chr8:48874511-48874773(+)$1	262	196	234	12.4628
UGGCAGACGGGGUGGGUGGGGUGGCCCGGGCUCCUCCU	chrX:153587999-153588209(-)$1	210	135	173	14.3328
CCACCUUCACCGUCAACACCAAGGAUGCAGGAGAGGGU	chrX:153582182-153582390(-)$1	208	72	110	15.1946
AUUGAAAAGUUAGAAGGCCUAGCUUCUUAUAGUUUUUG	chr1:52260081-52260381(-)$1	300	27	65	14.9504
AAGAGGGAGUUUGAGGAUGCUUUUCCUGCAGAUUUCAU	chr9:95027191-95027439(-)$1	248	161	199	11.6055
GAGAAGGUGGCAGGGUAGAACUGUGAAAUGUCAGGACU	chr5:154172216-154172456(+)$1	240	165	203	13.2088
GAGCUCGGGAGCCAAGGAGGCCAGACUGUGCCAAUGAG	chrX:153582537-153582758(-)$1	221	30	68	10.9649
GAUGUUGCAAAUUUUAUUUAUUUAGAAAUUUGUUUAUC	chrX:41204335-41204654(+)$1	319	251	289	10.3543
CAUAAUGAUUAAUACGAUCAAGCUUGGAUUGAUGACUU	chr2:54135390-54135653(-)$1	263	30	68	13.6077
AGCAUAUGGGGCAGCUGCUGCACCAGCUGCUCUGUGCU	chr3:184045517-184045763(+)$1	246	203	241	14.9807
UAUGUGCCAGCAAGCCAGAGGUGACUGUGCGGCUGAAU	chr19:34949647-34949902(+)$1	255	108	146	11.9258
CGUGCCCAAGGAGACGGGGGAGCACCUGGUGCAUGUGA	chrX:153581429-153581668(-)$1	239	106	144	11.6785
UUCACUGCUCGGGUCACAGGUGGGUGGCACUGGGAGCA	chrX:153581824-153582040(-)$1	216	100	138	14.2143
GUGGACUGCUCGAGCGCGGGCAGCGCGGAGCUGACCAU	chrX:153588477-153588699(-)$1	222	83	121	11.3568
UUCACUGCUCGGGUCACAGGUGGGUGGCACUGGGAGCA	chrX:153581840-153582064(-)$1	224	124	162	14.4350
GCCUUUGCAGGUGUCUUCCGUGAGGCCACCACUGAGUU	chrX:153588103-153588322(-)$1	219	39	77	10.9323
CAUUUACCCAUAUUCUUCCUCACAAGACGAUGGUAAGU	chr3:47770462-47770684(-)$1	222	138	176	15.7004
CCUUCAUUUGCUCCAGUUUUACUACUUGCAACUUCUGA	chr8:124357033-124357328(-)$1	295	139	177	10.8740
UGCAAAGCUGUUGGACACCCCUUUGUAAUUCAGCUUGG	chr2:61715622-61715875(-)$1	253	41	79	14.5183
AGCUGCUCUGUGCUGGGCAUCUGUCUACUGCUCAGUAC	chr3:184045616-184045869(+)$1	253	128	166	10.9364
UCAGUACCUACACCAUGGUUAUGGGCCUAGUGGUUCCU	chr1:19438936-19439184(-)$1	248	168	206	11.3790
CUACCUAGCGGAACUGGUAACACCCAUUCUGCAGGAAG	chr3:184046322-184046643(+)$1	321	156	194	13.4419
UGCAAAGGACGCCGGGGAGGGCCUGCUGGCUGUCCAGA	chrX:153586473-153586712(-)$1	239	103	141	11.3944
AAAGUGAAAGUAAUUUUUUUUCUGAAAUAUAUUUUCUG	chr18:2775708-2775984(+)$1	276	222	260	14.0613
CUUAGAGCUUAAAGGAUCACGCCAUCCUUGCAUUACGA	chr2:48030463-48030718(+)$1	255	186	224	12.2904
GGGAUUGCCACAUAUCAGUGACGUGGUGCUGGACAAGG	chr3:184040552-184040830(+)$1	278	153	191	13.7655
AGCCCUCUCAUGACGCCAGUAAGGUGAAGGCCGAGGGC	chrX:153590511-153590744(-)$1	233	78	116	11.3132
UGCUCUGUUUGUGGGGUGACGGGACUCAGGCGGGACAG	chr6:37142744-37142987(+)$1	243	144	182	12.1511
CUCCACCGCCACCACCUCACAGAGAGAUGGGGCUGGGG	chrX:153582233-153582499(-)$1	266	5	43	10.8296
AGGGGUGGAGCCCAGGGCUGCUGCUCACUAGCCCAUCC	chrX:153580650-153580909(-)$1	259	45	83	11.6303
GGCCCCCAAGGGGUGGGCCAGGUGGGGAGCUGCCCCGU	chr3:184040918-184041129(+)$1	211	67	105	11.2728
CCAGGCAUUUCGGACAGAGUUCAACUUGAUGUAUGCCU	chr3:9512269-9512566(+)$1	297	70	108	11.1741
GUGGACUGCUCGAGCGCGGGCAGCGCGGAGCUGACCAU	chrX:153588436-153588652(-)$1	216	36	74	11.3568
UGGUUAAAAGAAGAUAAGGUACGUUAAAUUAUGUUGAC	chr17:57738786-57739067(+)$1	281	200	238	13.6098
CUUCACAACGGAGGUGACAGAUUUCGCAGGACAGUAUG	chr9:95033719-95034012(-)$1	293	155	193	11.7165
GAUCAUUUCCUUAAUGUUGAUAUACAUGAAAUCUUCUU	chr6:161512961-161513276(+)$1	315	38	76	13.3982
CAAGGUGAAGGCCAGUGGCCCCGGGCUCAACACCACUG	chrX:153586536-153586791(-)$1	255	107	145	12.8797
GUUUGGGCCGGGGCUGCAGGGAGGCAGUGCGGGCUCCC	chrX:153588805-153589040(-)$1	235	93	131	14.4677
UUCACUGCUCGGGUCACAGGUGGGUGGCACUGGGAGCA	chrX:153581822-153582024(-)$1	202	84	122	14.4350
GGCUUGAGCAAGCCCAAGAAUGGUUCUGAUGGGGAAGA	chr9:123201816-123202066(-)$1	250	133	171	9.7267
GUGGACUGCUCGAGCGCGGGCAGCGCGGAGCUGACCAU	chrX:153588537-153588762(-)$1	225	146	184	11.3568

#DB
.((((.(((...((((((......))))))))).))))	chrX:153582746-153582951(-)$1	1	119	157	10.4964
(((..(((.(((.(((.....))).)))))))))))..	chrX:153582299-153582510(-)$1	1	18	56	10.4046
((..((((.((((.((((......)))..).)))).))	chrX:153587374-153587592(-)$1	1	86	124	13.6091
(((((((...((.(((.....)))))...).)))))).	chr1:19444288-19444504(-)$1	1	131	169	10.4615
.((((.(((.((...((......))....)).))))))	chrX:153587753-153587968(-)$1	1	98	136	13.3026
(((.((((.((((.((......)).)))).)))).)))	chrX:153586614-153586823(-)$1	1	167	205	10.9670
(((((((((.(.((((((...))))))..).)))))))	chrX:153587751-153587953(-)$1	1	126	164	10.3504
(((((((((.(.((((((...))))))..).)))))))	chrX:153587646-153587868(-)$1	1	41	79	10.3504
((.(((((..((((((((.....)))).))))....))	chrX:153581306-153581564(-)$1	1	65	103	11.0282
)(((((((((..(((.........)))..)))))))))	chr1:19430528-19430778(-)$1	1	54	92	12.8368
((.(((((.(((((..((((...))))..))))).)))	chrX:153586741-153586982(-)$1	1	159	197	11.4473
((((((..(((((((((......))))..)))))..))	chrX:153587848-153588096(-)$1	1	22	60	14.3328
))))))(((((.(..(((......)))..).)))))((	chr16:8994315-8994574(-)$1	1	101	139	13.9108
.(((((...(((((.((......)).))))))))))..	chr8:48874511-48874773(+)$1	1	196	234	12.4628
((((((..(((((((((......))))..)))))..))	chrX:153587999-153588209(-)$1	1	135	173	14.3328
((((((((.((..((.(......).))..)).))))))	chrX:153582182-153582390(-)$1	1	72	110	15.1946
.(((((((.(.(((((......)))))...).))))))	chr1:52260081-52260381(-)$1	1	27	65	14.9504
))).)))((((((((((......)))).))))))((..	chr9:95027191-95027439(-)$1	1	161	199	11.6055
(((....(((((...((......))...)))))...))	chr5:154172216-154172456(+)$1	1	165	203	13.2088
(((((((...((..((.........))..))...))))	chrX:153582537-153582758(-)$1	1	30	68	10.9649
((((..(((((((((.........))))))))).))))	chrX:41204335-41204654(+)$1	1	251	289	10.3543
((.....(((((..(((......)))..)))))....)	chr2:54135390-54135653(-)$1	1	30	68	13.6077
(((((..((((((((((......)))))))))))))))	chr3:184045517-184045763(+)$1	1	203	241	14.9807
((((.((((((..(((((......))).)).))))...	chr19:34949647-34949902(+)$1	1	108	146	11.9258
((((((((.((.(.(......)).))))).))))))))	chrX:153581429-153581668(-)$1	1	106	144	11.6785
(((((((((((((((((......))))).))..)))))	chrX:153581824-153582040(-)$1	1	100	138	14.2143
((((.(.((((..((((.....)))).)))).).))))	chrX:153588477-153588699(-)$1	1	83	121	11.3568
.((((((((((((((((......))))).))..)))))	chrX:153581840-153582064(-)$1	1	124	162	14.4350
(((..((..(((.((......)).)))..))..).)).	chrX:153588103-153588322(-)$1	1	39	77	10.9323
.(((((((.((..((((......))))..)))))))))	chr3:47770462-47770684(-)$1	1	138	176	15.7004
..)))..((((...(((......))).))))((((((.	chr8:124357033-124357328(-)$1	1	139	177	10.8740
(...((((((....(((......)))....))))))..	chr2:61715622-61715875(-)$1	1	41	79	14.5183
)))))))))((((((((((.........))))))))))	chr3:184045616-184045869(+)$1	1	128	166	10.9364
((((((.....(((((((((...))))..)))))...)	chr1:19438936-19439184(-)$1	1	168	206	11.3790
((((((.((((((.(((......)))))))))....))	chr3:184046322-184046643(+)$1	1	156	194	13.4419
(.....(((((((((.(......).))))).))))..)	chrX:153586473-153586712(-)$1	1	103	141	11.3944
(((..((((((((((((......))))).)))))))..	chr18:2775708-2775984(+)$1	1	222	260	14.0613
(.(((.((...((((((......)))))))).))).))	chr2:48030463-48030718(+)$1	1	186	224	12.2904
((..((((((..(((((......))))).))).)))..	chr3:184040552-184040830(+)$1	1	153	191	13.7655
.((((((...(..((((.....))))..)...))))))	chrX:153590511-153590744(-)$1	1	78	116	11.3132
.(.((((((((...(((......))))))))))).)))	chr6:37142744-37142987(+)$1	1	144	182	12.1511
(((((..(((.(((.(((.....))).)))))))))))	chrX:153582233-153582499(-)$1	1	5	43	10.8296
.(((((((.((...((((....))))....))))))))	chrX:153580650-153580909(-)$1	1	45	83	11.6303
.(((((((.(((((((.((......))..))))))).)	chr3:184040918-184041129(+)$1	1	67	105	11.2728
..((((((..((....((((...))))..)).))))))	chr3:9512269-9512566(+)$1	1	70	108	11.1741
((((.(.((((..((((.....)))).)))).).))))	chrX:153588436-153588652(-)$1	1	36	74	11.3568
).(((((...((..(((......)))..))...)))))	chr17:57738786-57739067(+)$1	1	200	238	13.6098
(((((((((....((((......))))......)).))	chr9:95033719-95034012(-)$1	1	155	193	11.7165
((..(((((....((((......)))))))))..))))	chr6:161512961-161513276(+)$1	1	38	76	13.3982
...((((..((((.(......).))))...)))).)))	chrX:153586536-153586791(-)$1	1	107	145	12.8797
(...(((((.(.(((((......))))).).)))))..	chrX:153588805-153589040(-)$1	1	93	131	14.4677
.((((((((((((((((......))))).))..)))))	chrX:153581822-153582024(-)$1	1	84	122	14.4350
.(((((((.(((((((((((...))))..)))).....	chr9:123201816-123202066(-)$1	1	133	171	9.7267
((((.(.((((..((((.....)))).)))).).))))	chrX:153588537-153588762(-)$1	1	146	184	11.3568

#PSSM
e : 0.16	c : 0.12	d : 0.11	f : 0.09	[ : 0.09	b : 0.09	: : 0.07	! : 0.05	H : 0.05	g : 0.03	" : 0.03	o : 0.01	= : 0.01	i : 0.01	
e : 0.18	g : 0.12	d : 0.11	f : 0.09	i : 0.09	b : 0.09	c : 0.07	" : 0.05	H : 0.03	o : 0.01	= : 0.01	$ : 0.01	[ : 0.01	a : 0.01	! : 0.01	: : 0.01	
e : 0.16	g : 0.16	d : 0.11	f : 0.11	i : 0.09	c : 0.07	! : 0.05	[ : 0.05	" : 0.05	b : 0.03	$ : 0.03	a : 0.01	= : 0.01	
e : 0.18	g : 0.16	! : 0.11	d : 0.09	f : 0.09	i : 0.09	c : 0.09	$ : 0.03	" : 0.03	[ : 0.01	] : 0.01	# : 0.01	= : 0.01	h : 0.01	
g : 0.16	e : 0.16	d : 0.11	f : 0.11	c : 0.11	i : 0.09	! : 0.07	[ : 0.07	$ : 0.03	# : 0.01	= : 0.01	h : 0.01	
g : 0.18	c : 0.11	f : 0.11	e : 0.11	i : 0.09	d : 0.07	[ : 0.05	! : 0.05	a : 0.05	$ : 0.03	b : 0.03	# : 0.01	: : 0.01	= : 0.01	h : 0.01	
g : 0.16	c : 0.11	e : 0.11	d : 0.09	i : 0.09	! : 0.07	f : 0.07	[ : 0.07	b : 0.05	$ : 0.03	a : 0.01	" : 0.01	# : 0.01	: : 0.01	= : 0.01	h : 0.01	
d : 0.16	g : 0.14	e : 0.12	c : 0.11	" : 0.09	i : 0.09	! : 0.07	f : 0.07	= : 0.03	b : 0.03	$ : 0.01	h : 0.01	
[ : 0.20	e : 0.12	" : 0.11	d : 0.11	i : 0.09	c : 0.07	! : 0.07	g : 0.05	f : 0.05	= : 0.03	$ : 0.01	h : 0.01	b : 0.01	
d : 0.16	e : 0.12	" : 0.11	c : 0.09	i : 0.09	[ : 0.07	b : 0.07	f : 0.05	! : 0.03	= : 0.03	g : 0.03	# : 0.03	a : 0.01	$ : 0.01	h : 0.01	
b : 0.22	d : 0.16	e : 0.14	a : 0.07	c : 0.05	# : 0.05	" : 0.03	! : 0.03	[ : 0.03	f : 0.03	= : 0.03	g : 0.03	i : 0.01	$ : 0.01	h : 0.01	
! : 0.16	e : 0.16	b : 0.14	[ : 0.09	" : 0.07	c : 0.07	d : 0.07	f : 0.05	# : 0.05	= : 0.03	g : 0.03	i : 0.01	
e : 0.24	! : 0.18	f : 0.11	d : 0.09	" : 0.09	# : 0.07	[ : 0.05	c : 0.03	a : 0.03	= : 0.03	i : 0.01	g : 0.01	
d : 0.22	e : 0.20	[ : 0.09	" : 0.09	f : 0.07	c : 0.07	! : 0.07	b : 0.05	= : 0.03	# : 0.03	i : 0.01	g : 0.01	
d : 0.24	c : 0.16	e : 0.16	b : 0.09	f : 0.07	a : 0.05	" : 0.03	! : 0.03	[ : 0.03	= : 0.03	i : 0.01	g : 0.01	# : 0.01	
d : 0.24	c : 0.22	e : 0.14	b : 0.09	f : 0.07	o : 0.05	r : 0.03	[ : 0.03	= : 0.03	! : 0.01	g : 0.01	# : 0.01	
d : 0.29	c : 0.18	e : 0.11	o : 0.09	f : 0.07	b : 0.05	r : 0.05	n : 0.03	a : 0.03	= : 0.03	[ : 0.01	
o : 0.55	n : 0.11	d : 0.11	c : 0.07	f : 0.05	r : 0.05	= : 0.01	b : 0.01	
o : 0.62	n : 0.14	d : 0.07	r : 0.05	l : 0.03	= : 0.01	m : 0.01	b : 0.01	
o : 0.64	n : 0.14	r : 0.07	d : 0.07	l : 0.03	m : 0.01	
o : 0.64	n : 0.14	l : 0.11	r : 0.07	m : 0.01	
o : 0.59	n : 0.11	r : 0.07	l : 0.07	c : 0.03	f : 0.03	a : 0.03	b : 0.01	m : 0.01	
o : 0.55	d : 0.09	r : 0.07	l : 0.07	c : 0.03	b : 0.03	f : 0.03	n : 0.03	e : 0.01	a : 0.01	] : 0.01	
d : 0.31	c : 0.16	e : 0.12	o : 0.09	b : 0.07	r : 0.07	f : 0.05	a : 0.03	] : 0.03	= : 0.01	
d : 0.31	c : 0.22	e : 0.12	b : 0.09	f : 0.07	] : 0.07	r : 0.03	i : 0.01	= : 0.01	o : 0.01	
d : 0.33	c : 0.24	e : 0.14	b : 0.09	f : 0.07	4 : 0.01	] : 0.01	3 : 0.01	i : 0.01	= : 0.01	r : 0.01	
d : 0.24	e : 0.16	c : 0.12	f : 0.09	] : 0.09	4 : 0.05	b : 0.05	2 : 0.05	3 : 0.03	i : 0.01	= : 0.01	r : 0.01	h : 0.01	
2 : 0.35	e : 0.16	d : 0.09	3 : 0.07	f : 0.05	c : 0.05	4 : 0.05	] : 0.05	i : 0.01	= : 0.01	r : 0.01	h : 0.01	6 : 0.01	
2 : 0.29	d : 0.11	] : 0.11	e : 0.09	f : 0.07	c : 0.05	3 : 0.05	4 : 0.05	= : 0.03	b : 0.03	i : 0.01	a : 0.01	h : 0.01	6 : 0.01	
b : 0.22	e : 0.16	a : 0.11	d : 0.11	f : 0.05	c : 0.05	3 : 0.05	] : 0.03	i : 0.03	= : 0.03	4 : 0.03	g : 0.03	h : 0.01	6 : 0.01	
b : 0.20	e : 0.16	] : 0.14	d : 0.14	c : 0.07	f : 0.05	i : 0.03	= : 0.03	g : 0.03	3 : 0.03	a : 0.01	h : 0.01	6 : 0.01	
e : 0.22	] : 0.14	d : 0.12	f : 0.09	g : 0.09	2 : 0.07	c : 0.05	3 : 0.05	i : 0.03	= : 0.03	h : 0.01	b : 0.01	6 : 0.01	
e : 0.20	g : 0.14	d : 0.11	f : 0.11	2 : 0.09	c : 0.07	a : 0.05	4 : 0.03	i : 0.03	3 : 0.03	= : 0.03	] : 0.01	h : 0.01	6 : 0.01	
e : 0.22	g : 0.14	f : 0.11	] : 0.09	d : 0.09	i : 0.07	c : 0.05	4 : 0.05	3 : 0.03	a : 0.01	= : 0.01	h : 0.01	b : 0.01	2 : 0.01	> : 0.01	
e : 0.20	g : 0.14	f : 0.11	d : 0.09	] : 0.09	i : 0.07	c : 0.05	4 : 0.05	b : 0.05	2 : 0.03	3 : 0.03	= : 0.01	> : 0.01	
e : 0.20	g : 0.16	f : 0.11	d : 0.07	i : 0.07	] : 0.05	4 : 0.05	2 : 0.05	b : 0.05	3 : 0.05	c : 0.03	= : 0.01	a : 0.01	> : 0.01	
d : 0.16	g : 0.14	e : 0.14	f : 0.09	i : 0.09	c : 0.07	2 : 0.07	3 : 0.07	4 : 0.03	! : 0.01	b : 0.01	= : 0.01	] : 0.01	> : 0.01	
d : 0.18	g : 0.16	e : 0.16	c : 0.09	i : 0.09	2 : 0.05	f : 0.05	3 : 0.05	] : 0.03	4 : 0.01	! : 0.01	[ : 0.01	= : 0.01	> : 0.01	

#score	669.3859992772888
#seq	54
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_UTR_m1_run2.txt

#BEAR
eeeeecccdddd[a"""cccmmmmccca]dddd]ccc]ee	chr8:30669835-30670091(-)$1	256	18	58	11.9648
ggggggg[a"""bb[ccc[cccmmmmccc22ccc]bb]ag	chr2:95825188-95825446(-)$1	258	212	252	13.4831
hhhhhccc[ccc[bb!!ddddmmmmdddd22bb]ccc]cc	chr2:70902240-70902503(-)$1	263	170	210	12.8321
[bb!!eeeeeeeeee[ccccccmmmmccc22ccc]eeeee	chr19:14529791-14530095(-)$1	304	150	190	11.4643
dddd[ccc$$$$$ddddcccooooooccc22dddd4444c	chrX:106893689-106893973(+)$1	284	130	170	15.1038
ggg[ggggggg[a[bb[cccooooooccc]bb]a22gggg	chr19:18547582-18547872(-)$1	290	137	177	16.0004
eeeeebb[bb[dddd[ddddoooooodddd]dddd]bb]b	chr7:77166501-77166742(+)$1	241	111	151	13.4555
!dddd[ccc####a"""cccnnnnnccc22a4444ccc]d	chr19:3062292-3062531(-)$1	239	162	202	14.9020
ccc[dddd"""dddd[ddddoooooodddddddd]dddd]	chr15:44063542-44063791(+)$1	249	143	183	14.3006
8ggggggg:dddd"""ddddoooooodddd333dddd::d	chr5:79946748-79946968(-)$1	220	63	103	14.0427
d"""dddd!!bb[bb"""bboooooobb333bb]bb22dd	chr19:4038352-4038641(+)$1	289	37	77	14.7471
:ggggggg[eeeee"""cccooooooccc]eeeeeggggg	chr5:145666606-145666854(+)$1	248	130	170	15.4870
dddggggggg[dddd[ddddoooooodddd]dddd]gggg	chr2:97525560-97525833(-)$1	273	159	199	15.6155
eee$$$$$ccc[a"""ddddoooooodddd]a]ccceeee	chr17:22022377-22022617(+)$1	240	8	48	15.8217
=============="""cccnnnnnccc4444========	chr7:98993974-98994239(-)$1	265	66	106	16.7629
a]a::bb!!ccc####a[ccclllccc]a333ccc22bbf	chr4:2935990-2936301(-)$1	311	49	89	12.0364
eee[bb[a[a[ccc!!cccqqqqqqqqccc333ccc]a22	chr6:34664409-34664669(-)$1	260	10	50	12.0131
eegggggggeeeee!!a[bboooooobb]a22eeeee]gg	chr8:103424365-103424615(-)$1	250	125	165	14.9653
c[a####bb[a!!bb!!cccooooooccc22bb22a]bb2	chr17:55333777-55334021(+)$1	244	95	135	15.9841
====ffffff[ccc[ccc[cccmmmmccc]cccccc]fff	chr8:101964436-101964710(-)$1	274	219	259	11.8835
hhhhhhhh!!a[bb[ccc!!ccclllccc22ccc]bb]a2	chr8:102217407-102217693(-)$1	286	26	66	12.1524
eee[a[ggggggg"""ddddoooooodddd55555ggggg	chr19:41119580-41119830(+)$1	250	174	214	14.3092
d[dddd[a[dddd"""ccc[ammmma]ccc22dddda]dd	chr1:245026275-245026514(-)$1	239	130	170	13.1821
eeccc[ccc[ccc!!eeeeennnnneeeee22ccc]cccc	chr1:36789178-36789471(+)$1	293	146	186	12.2489
444ccc:ffffff[bb[cccooooooccc22bb]ffffff	chr8:25315656-25315901(-)$1	245	118	158	13.1615
HHgggggggccc[ccc[cccccclllccc22ccc]ccccc	chr2:54197761-54198043(-)$1	282	150	190	12.7147
ddhhhhhhhh[dddd[ddddoooooodddd]dddd]hhhh	chr2:97525500-97525760(-)$1	260	86	126	13.7966
gggg"""a[==========aooooooa]==========]a	chr19:7978203-7978516(+)$1	313	202	242	17.2447
[a!!a[a[a[bb[ccc"""aooooooa333ccc]bb]a]a	chr17:37824279-37824595(+)$1	316	184	224	16.1086
ccc"""ggggggg[dddd[aooooooa]dddd]ggggggg	chr5:179153578-179153800(+)$1	222	175	215	15.1387
============!!ffffffnnnnnffffff333======	chr5:126172483-126172764(+)$1	281	66	106	12.7551
c]a::ccc!!a[gggggggaooooooa]ggggggga22cc	chr19:41770848-41771096(+)$1	248	26	66	13.0730
dddd[ccc[ccc[bb!!cccoooooocccbbccc]ccc]d	chr15:79165208-79165491(+)$1	283	9	49	16.4300
ccc:dddd[dddd"""cccbboooooobb333ccc22ddd	chr16:1749173-1749423(+)$1	250	139	179	14.3286
ccciiiiiiiii!!a!!ddddnnnnndddd22a]iiiiii	chr19:1104347-1104709(+)$1	362	204	244	15.4278
dd!!bb!!dddd[ccc[a[bboooooobb]a]ccc333dd	chr5:137088381-137088623(-)$1	242	45	85	14.0166
!bb####ccc[dddd[aooooooa]dddd333cccbb22b	chr11:62482472-62482739(-)$1	267	45	85	12.1988
[bb[ccc[iiiiiiiii!!ccclllccc22iiiiiiiii]	chr7:5569450-5569692(-)$1	242	146	186	13.4451
===[ccc[a[ccc####bb[bbmmmmbb]bb4444ccc]a	chr3:185542677-185542941(-)$1	264	14	54	12.6178
beeeee[eeeee####ddddoooooodddd333eeeee]e	chr8:101963101-101963391(-)$1	290	212	252	16.0153
==========[bbccc[bb[ammmma]bb]ccc]bb22==	chr12:132402736-132402996(+)$1	260	67	107	11.7768
ddd[iiiiiiiii####cccooooooccc333iiiiiiii	chr14:70238180-70238426(+)$1	246	164	204	19.7885
ddd[a[dddd"""bb[bb[ccclllccc]bb]bb333ddd	chr19:34287649-34287898(+)$1	249	37	77	11.3187
:ggggggg!!bb[gggggggooooooggggggg]bb333g	chr7:158424056-158424274(-)$1	218	7	47	14.3140
gggg[ccc[bb"""a[ddddoooooodddd]a22bb]ccc	chr2:242447651-242447909(-)$1	258	3	43	16.4739
cc"""ccc==========[bbnnnnnbb]==========]	chr12:109124510-109124804(-)$1	294	96	136	13.6083
eee[ccc[a[ccc[bbddddoooooodddd22bb]ccc]a	chr3:160282986-160283337(-)$1	351	142	182	16.3578
ddd[iiiiiiiii####cccooooooccc333iiiiiiii	chr14:70238226-70238465(+)$1	239	118	158	19.7885
8ggggggg:dddd"""ddddoooooodddd333dddd::d	chr5:79946711-79946948(-)$1	237	43	83	14.0427
====dddd[ccc####ddddoooooodddd333ccc]ddd	chr6:15248985-15249254(+)$1	269	92	132	17.9139

#otherMatches

#Seq PSSM
UCCUCCCCCUGUGGGACCUggcgacggcggcggagggaga	chr8:30669835-30670091(-)$1	256	18	58	11.9648
CCCCGCUAGGGACUGUGCAGGCCGGAGCUAGGCAGGGACA	chr2:95825188-95825446(-)$1	258	212	252	13.4831
UAUGCUUGCUGGGCUUUGGCUGACUGGCUUUGGGCCACCA	chr2:70902240-70902503(-)$1	263	170	210	12.8321
GUCAGAGCGCUGUGUGUUGGCCGUUGGGCACCGGGGCGCA	chr19:14529791-14530095(-)$1	304	150	190	11.4643
AGCAAAUGUUUCUUGGGAGGAAGAAGCCUGAUCCAUCACC	chrX:106893689-106893973(+)$1	284	130	170	15.1038
UGGAGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGU	chr19:18547582-18547872(-)$1	290	137	177	16.0004
CUAGCGCAGCGGCUCGCCUGGUACUGUGGGAGAGCGGCGG	chr7:77166501-77166742(+)$1	241	111	151	13.4555
ggcgcgcggggagggggcgcaggaagcgggcgaggccggg	chr19:3062292-3062531(-)$1	239	162	202	14.9020
UCUAAUUUUUUUUGUACAUUUGGAACAGUGACAAUAAAUG	chr15:44063542-44063791(+)$1	249	143	183	14.3006
UUACACUUAGGAGAUUUCAACUCAACUUGACCACUCUGAG	chr5:79946748-79946968(-)$1	220	63	103	14.0427
CGAGCAGCGAGCGUUUUAGCCGAGAAGCCAUGGAGUGGGU	chr19:4038352-4038641(+)$1	289	37	77	14.7471
UAAAUGGGAGUCAUAUAUGACUUUGUUCAGAUGACCUUAU	chr5:145666606-145666854(+)$1	248	130	170	15.4870
CCUUCUUCCUGUACAGGGCUGGGAAAGGCUGUGUGAGGGG	chr2:97525560-97525833(-)$1	273	159	199	15.6155
UUACACCUGGGAGAUUUCAAUUUAAUUUGACCACCCUGAG	chr17:22022377-22022617(+)$1	240	8	48	15.8217
CUCCUCUUCAUCUUGGCACAGAAAUUGUUUGGGGGAUGGG	chr7:98993974-98994239(-)$1	265	66	106	16.7629
gggacgggaccggggacgcgcaggguggggggcgggaccg	chr4:2935990-2936301(-)$1	311	49	89	12.0364
ugcgcagugggcgcggcgcgggaggaggcggaggcggcgg	chr6:34664409-34664669(-)$1	260	10	50	12.0131
UCGAGUGGAGGACGAGAAGGAAAGCACCAUGACGUCCAUC	chr8:103424365-103424615(-)$1	250	125	165	14.9653
GACGGGGGGGUGUGCGAGGCAGCGGGGCUGAGCUAAGCCG	chr17:55333777-55334021(+)$1	244	95	135	15.9841
GGAGGAGUGGCGGCUGCGGGCGAGGACGCGCGCGCCUCCG	chr8:101964436-101964710(-)$1	274	219	259	11.8835
CCCGGGUGAGCGGCAGCGGGGGCGGUGCUGACGCCGCGGG	chr8:102217407-102217693(-)$1	286	26	66	12.1524
GGGGUGUGGCCUAGAAUGUUAGGCGGAGCGGGAGGUGGGC	chr19:41119580-41119830(+)$1	250	174	214	14.3092
ccgcggggagcgcgggcccgcgggggaggggagcgccgcc	chr1:245026275-245026514(-)$1	239	130	170	13.1821
ccgggaggagggAGAGCCCGGCCCGCGGGCCGUCCGUCCC	chr1:36789178-36789471(+)$1	293	146	186	12.2489
GGACCCAGCGGGGGCAGCGCGAUGAGGCGGGUGACCCUGU	chr8:25315656-25315901(-)$1	245	118	158	13.1615
GAGAgcccccggagccgggcgggcgucccgagccgggccc	chr2:54197761-54198043(-)$1	282	150	190	12.7147
CCUUCUUCCUGUACAGGGCUGGGAAAGGCUGUGUGAGGGG	chr2:97525500-97525760(-)$1	260	86	126	13.7966
cgggcugagggugggggugcgagguggUCACUCCCAUCGU	chr19:7978203-7978516(+)$1	313	202	242	17.2447
agggcgagggcugcgggagcaaguacggagccgggggugu	chr17:37824279-37824595(+)$1	316	184	224	16.1086
AGCAGAGGUAAAGGAAAGGGGUCACACAUUUUGUUUUACC	chr5:179153578-179153800(+)$1	222	175	215	15.1387
CUUCUUCUCUUAGAUUCUUAAUUCAUGAGGAGGGUGGGGG	chr5:126172483-126172764(+)$1	281	66	106	12.7551
UGGAUCCUGACACUCAGUGCAGGGGGGACACUGGGGGAGG	chr19:41770848-41771096(+)$1	248	26	66	13.0730
CUGCGGGCGCUGGCAAAUCCGGCCCAGGAUGUAGAGCUGG	chr15:79165208-79165491(+)$1	283	9	49	16.4300
GCCAGCUGAUUGGAUGUCUAGGAAUGACUGAAAGAAACCA	chr16:1749173-1749423(+)$1	250	139	179	14.3286
GUUGGGGGCGCGGAGGGCUGGAAAUCCCGGAUCAcgcgcc	chr19:1104347-1104709(+)$1	362	204	244	15.4278
UAUUACUUGGACCUUGGUCGUUUUUAUACUAGCAAAAUGU	chr5:137088381-137088623(-)$1	242	45	85	14.0166
AGGAAAACAGGGGCUGUCGGGGUGGGGCUGAGCUGCCGGG	chr11:62482472-62482739(-)$1	267	45	85	12.1988
GCUGUUUGAACCGGGCGGAGGCGGGGCUGGCGCCCGGUUG	chr7:5569450-5569692(-)$1	242	146	186	13.4451
CCCCCGGGCgggccgggccggccgcgguggggggagccag	chr3:185542677-185542941(-)$1	264	14	54	12.6178
CCCUGCGCUCGGUUUGGGGACGCAUAUCCUGCUUUGGGGG	chr8:101963101-101963391(-)$1	290	212	252	16.0153
CCGCAGCCCUUGGCCUGAGGUGGGGAGCUGGGGACUUGGG	chr12:132402736-132402996(+)$1	260	67	107	11.7768
GGGGUUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUA	chr14:70238180-70238426(+)$1	246	164	204	19.7885
gccgcgccgcgaggggccgcgugaagcgggggccggggcg	chr19:34287649-34287898(+)$1	249	37	77	11.3187
ACCCAUAUAAUAGGGAAAGGGUGGGAUUUUUUUGUGGGAA	chr7:158424056-158424274(-)$1	218	7	47	14.3140
CGGGCGCUGCAgagcgggccgggggaggccgggauggagc	chr2:242447651-242447909(-)$1	258	3	43	16.4739
CCGGGCUCACGUGGGGCCGGGGCGAGCUGGGCCCUGCGUC	chr12:109124510-109124804(-)$1	294	96	136	13.6083
GAAGCGGCGGCGCGGCGGGCACAGCAGCUCAGGCGGCGGC	chr3:160282986-160283337(-)$1	351	142	182	16.3578
GGGGUUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUA	chr14:70238226-70238465(+)$1	239	118	158	19.7885
UUACACUUAGGAGAUUUCAACUCAACUUGACCACUCUGAG	chr5:79946711-79946948(-)$1	237	43	83	14.0427
agggagcugggcgggggcgggggcugccgcagagccgggc	chr6:15248985-15249254(+)$1	269	92	132	17.9139

#DB
((((((((((((.(...(((....)))).)))).))).))	chr8:30669835-30670091(-)$1	1	18	58	11.9648
(((((((.(...((.(((.(((....)))..))).)).))	chr2:95825188-95825446(-)$1	1	212	252	13.4831
((((((((.(((.((..((((....))))..)).))).))	chr2:70902240-70902503(-)$1	1	170	210	12.8321
.((..((((((((((.((((((....)))..))).)))))	chr19:14529791-14530095(-)$1	1	150	190	11.4643
((((.(((.....(((((((......)))..))))....)	chrX:106893689-106893973(+)$1	1	130	170	15.1038
(((.(((((((.(.((.(((......))).)).)..))))	chr19:18547582-18547872(-)$1	1	137	177	16.0004
)))))((.((.((((.((((......)))).)))).)).)	chr7:77166501-77166742(+)$1	1	111	151	13.4555
.((((.(((....(...(((.....)))..)....))).)	chr19:3062292-3062531(-)$1	1	162	202	14.9020
(((.((((...((((.((((......)))))))).)))).	chr15:44063542-44063791(+)$1	1	143	183	14.3006
.))))))).((((...((((......))))...))))..(	chr5:79946748-79946968(-)$1	1	63	103	14.0427
(...((((..((.((...((......))...)).))..))	chr19:4038352-4038641(+)$1	1	37	77	14.7471
.(((((((.(((((...(((......))).))))))))))	chr5:145666606-145666854(+)$1	1	130	170	15.4870
)))(((((((.((((.((((......)))).)))).))))	chr2:97525560-97525833(-)$1	1	159	199	15.6155
(((.....(((.(...((((......)))).).)))))))	chr17:22022377-22022617(+)$1	1	8	48	15.8217
((((((((((((((...(((.....)))....))))))))	chr7:98993974-98994239(-)$1	1	66	106	16.7629
).)..((..(((....(.(((...))).)...)))..))(	chr4:2935990-2936301(-)$1	1	49	89	12.0364
(((.((.(.(.(((..(((........)))...))).)..	chr6:34664409-34664669(-)$1	1	10	50	12.0131
))((((((((((((..(.((......)).)..))))).))	chr8:103424365-103424615(-)$1	1	125	165	14.9653
(.(....((.(..((..(((......)))..))..).)).	chr17:55333777-55334021(+)$1	1	95	135	15.9841
))))((((((.(((.(((.(((....))).)))))).)))	chr8:101964436-101964710(-)$1	1	219	259	11.8835
((((((((..(.((.(((..(((...)))..))).)).).	chr8:102217407-102217693(-)$1	1	26	66	12.1524
(((.(.(((((((...((((......)))).....)))))	chr19:41119580-41119830(+)$1	1	174	214	14.3092
(.((((.(.((((...(((.(....).)))..))))).))	chr1:245026275-245026514(-)$1	1	130	170	13.1821
))(((.(((.(((..(((((.....)))))..))).))))	chr1:36789178-36789471(+)$1	1	146	186	12.2489
...))).((((((.((.(((......)))..)).))))))	chr8:25315656-25315901(-)$1	1	118	158	13.1615
((((((((((((.(((.((((((...)))..))).)))))	chr2:54197761-54198043(-)$1	1	150	190	12.7147
))((((((((.((((.((((......)))).)))).))))	chr2:97525500-97525760(-)$1	1	86	126	13.7966
((((...(.(((((((((((......).)))))))))).)	chr19:7978203-7978516(+)$1	1	202	242	17.2447
.(..(.(.(.((.(((...(......)...))).)).).)	chr17:37824279-37824595(+)$1	1	184	224	16.1086
(((...(((((((.((((.(......).)))).)))))))	chr5:179153578-179153800(+)$1	1	175	215	15.1387
((((((((((((..((((((.....))))))...))))))	chr5:126172483-126172764(+)$1	1	66	106	12.7551
).)..(((..(.((((((((......).))))))))..))	chr19:41770848-41771096(+)$1	1	26	66	13.0730
((((.(((.(((.((..(((......)))))))).))).)	chr15:79165208-79165491(+)$1	1	9	49	16.4300
))).((((.((((...(((((......))...)))..)))	chr16:1749173-1749423(+)$1	1	139	179	14.3286
)))(((((((((..(..((((.....))))..).))))))	chr19:1104347-1104709(+)$1	1	204	244	15.4278
((..((..((((.(((.(.((......)).).)))...))	chr5:137088381-137088623(-)$1	1	45	85	14.0166
.((....(((.((((.(......).))))...)))))..)	chr11:62482472-62482739(-)$1	1	45	85	12.1988
.((.(((.(((((((((..(((...)))..))))))))).	chr7:5569450-5569692(-)$1	1	146	186	13.4451
(((.(((.(.(((....((.((....)).))....))).)	chr3:185542677-185542941(-)$1	1	14	54	12.6178
((((((.(((((....((((......))))...))))).)	chr8:101963101-101963391(-)$1	1	212	252	16.0153
((((((((((.(((((.((.(....).)).))).))..))	chr12:132402736-132402996(+)$1	1	67	107	11.7768
(((.(((((((((....(((......)))...))))))))	chr14:70238180-70238426(+)$1	1	164	204	19.7885
(((.(.((((...((.((.(((...))).)).))...)))	chr19:34287649-34287898(+)$1	1	37	77	11.3187
.(((((((..((.(((((((......))))))).))...)	chr7:158424056-158424274(-)$1	1	7	47	14.3140
((((.(((.((...(.((((......)))).)..)).)))	chr2:242447651-242447909(-)$1	1	3	43	16.4739
((...(((((((((((((.((.....)).)))))))))).	chr12:109124510-109124804(-)$1	1	96	136	13.6083
(((.(((.(.(((.((((((......))))..)).))).)	chr3:160282986-160283337(-)$1	1	142	182	16.3578
(((.(((((((((....(((......)))...))))))))	chr14:70238226-70238465(+)$1	1	118	158	19.7885
.))))))).((((...((((......))))...))))..(	chr5:79946711-79946948(-)$1	1	43	83	14.0427
))))((((.(((....((((......))))...))).)))	chr6:15248985-15249254(+)$1	1	92	132	17.9139

#PSSM
d : 0.19	e : 0.16	c : 0.14	= : 0.12	g : 0.08	[ : 0.06	h : 0.04	! : 0.04	8 : 0.04	: : 0.04	a : 0.02	4 : 0.02	H : 0.02	b : 0.02	
e : 0.18	d : 0.18	g : 0.16	= : 0.12	c : 0.10	b : 0.06	h : 0.04	] : 0.04	[ : 0.04	" : 0.02	4 : 0.02	H : 0.02	a : 0.02	
g : 0.19	d : 0.16	e : 0.14	= : 0.12	c : 0.10	h : 0.06	b : 0.06	a : 0.06	" : 0.04	! : 0.04	4 : 0.02	
g : 0.19	[ : 0.19	= : 0.10	d : 0.08	e : 0.06	h : 0.06	! : 0.06	" : 0.06	: : 0.06	# : 0.04	c : 0.04	$ : 0.02	i : 0.02	
g : 0.18	d : 0.12	c : 0.10	e : 0.06	h : 0.06	[ : 0.06	= : 0.06	a : 0.06	" : 0.06	i : 0.06	: : 0.04	b : 0.04	# : 0.04	! : 0.02	$ : 0.02	f : 0.02	
c : 0.21	g : 0.18	[ : 0.10	d : 0.10	b : 0.08	= : 0.06	i : 0.06	e : 0.04	# : 0.04	h : 0.04	" : 0.04	$ : 0.02	f : 0.02	
c : 0.23	g : 0.21	d : 0.10	= : 0.06	[ : 0.06	i : 0.06	b : 0.04	# : 0.04	h : 0.04	e : 0.02	$ : 0.02	f : 0.02	: : 0.02	" : 0.02	a : 0.02	! : 0.02	
c : 0.19	g : 0.19	[ : 0.12	d : 0.10	= : 0.06	a : 0.06	i : 0.06	e : 0.04	! : 0.04	f : 0.04	h : 0.04	$ : 0.02	b : 0.02	
[ : 0.18	g : 0.12	! : 0.10	a : 0.08	c : 0.08	= : 0.08	i : 0.08	d : 0.06	e : 0.04	b : 0.04	: : 0.04	f : 0.04	$ : 0.02	" : 0.02	h : 0.02	
d : 0.14	c : 0.14	= : 0.10	[ : 0.10	e : 0.08	g : 0.08	! : 0.08	i : 0.08	" : 0.04	b : 0.04	f : 0.04	$ : 0.02	# : 0.02	a : 0.02	h : 0.02	
c : 0.18	[ : 0.14	d : 0.12	e : 0.08	b : 0.08	= : 0.08	i : 0.08	" : 0.06	g : 0.06	a : 0.06	$ : 0.02	# : 0.02	f : 0.02	
d : 0.21	c : 0.19	e : 0.08	[ : 0.08	b : 0.08	= : 0.08	i : 0.08	" : 0.06	g : 0.04	$ : 0.02	# : 0.02	! : 0.02	f : 0.02	
d : 0.18	[ : 0.16	c : 0.10	# : 0.08	b : 0.06	e : 0.06	= : 0.06	! : 0.06	g : 0.06	i : 0.06	a : 0.04	" : 0.04	$ : 0.02	f : 0.02	
b : 0.14	" : 0.14	d : 0.12	# : 0.12	c : 0.12	[ : 0.08	e : 0.06	= : 0.06	! : 0.06	a : 0.04	g : 0.04	i : 0.02	
" : 0.19	b : 0.16	d : 0.14	# : 0.12	c : 0.08	[ : 0.06	! : 0.06	= : 0.04	g : 0.04	a : 0.04	e : 0.02	f : 0.02	i : 0.02	
" : 0.21	[ : 0.16	c : 0.14	! : 0.12	# : 0.12	b : 0.06	d : 0.04	= : 0.04	g : 0.04	e : 0.02	f : 0.02	i : 0.02	
d : 0.27	c : 0.14	" : 0.12	[ : 0.10	! : 0.08	a : 0.06	# : 0.06	= : 0.04	g : 0.04	e : 0.02	f : 0.02	i : 0.02	b : 0.02	
c : 0.38	d : 0.30	b : 0.06	" : 0.04	[ : 0.04	= : 0.04	g : 0.04	e : 0.02	f : 0.02	a : 0.02	o : 0.02	! : 0.02	
c : 0.34	d : 0.27	[ : 0.12	b : 0.08	! : 0.04	g : 0.04	e : 0.02	= : 0.02	" : 0.02	f : 0.02	o : 0.02	
c : 0.36	d : 0.27	b : 0.10	a : 0.08	[ : 0.06	q : 0.02	! : 0.02	e : 0.02	f : 0.02	o : 0.02	g : 0.02	
o : 0.56	c : 0.16	n : 0.08	b : 0.08	d : 0.04	a : 0.04	m : 0.02	q : 0.02	
o : 0.60	c : 0.14	n : 0.12	m : 0.08	l : 0.02	q : 0.02	b : 0.02	
o : 0.60	m : 0.16	n : 0.12	l : 0.06	c : 0.04	q : 0.02	
o : 0.58	m : 0.16	n : 0.12	l : 0.10	q : 0.02	a : 0.02	
o : 0.58	m : 0.14	n : 0.12	l : 0.08	c : 0.04	q : 0.02	] : 0.02	
o : 0.58	c : 0.12	m : 0.08	d : 0.04	l : 0.04	a : 0.04	n : 0.04	q : 0.02	e : 0.02	f : 0.02	
c : 0.38	d : 0.30	b : 0.08	a : 0.08	] : 0.04	o : 0.04	q : 0.02	e : 0.02	f : 0.02	g : 0.02	
c : 0.38	d : 0.30	b : 0.14	] : 0.08	a : 0.02	e : 0.02	3 : 0.02	f : 0.02	g : 0.02	
d : 0.32	c : 0.30	] : 0.10	b : 0.06	2 : 0.04	3 : 0.04	g : 0.04	4 : 0.02	a : 0.02	e : 0.02	= : 0.02	f : 0.02	
d : 0.30	2 : 0.19	3 : 0.14	] : 0.10	b : 0.06	c : 0.04	= : 0.04	g : 0.04	4 : 0.02	a : 0.02	e : 0.02	f : 0.02	
2 : 0.25	3 : 0.21	] : 0.10	b : 0.08	d : 0.06	c : 0.06	a : 0.04	= : 0.04	g : 0.04	e : 0.02	4 : 0.02	5 : 0.02	f : 0.02	i : 0.02	
3 : 0.21	c : 0.16	d : 0.14	b : 0.10	2 : 0.10	4 : 0.06	a : 0.04	= : 0.04	g : 0.04	] : 0.04	e : 0.02	5 : 0.02	i : 0.02	
c : 0.25	d : 0.14	b : 0.12	3 : 0.12	] : 0.06	= : 0.06	i : 0.06	4 : 0.04	e : 0.04	g : 0.04	5 : 0.02	a : 0.02	2 : 0.02	
c : 0.27	] : 0.16	d : 0.16	e : 0.06	= : 0.06	i : 0.06	4 : 0.04	2 : 0.04	g : 0.04	b : 0.04	a : 0.02	5 : 0.02	3 : 0.02	
c : 0.21	] : 0.14	d : 0.14	b : 0.10	= : 0.08	i : 0.08	e : 0.06	2 : 0.04	4 : 0.04	g : 0.04	5 : 0.02	f : 0.02	3 : 0.02	
c : 0.21	b : 0.16	] : 0.08	d : 0.08	= : 0.08	i : 0.08	e : 0.06	2 : 0.06	g : 0.06	a : 0.04	3 : 0.04	4 : 0.02	f : 0.02	
c : 0.16	] : 0.12	g : 0.10	2 : 0.10	b : 0.08	e : 0.08	= : 0.08	i : 0.08	d : 0.06	3 : 0.06	4 : 0.02	a : 0.02	f : 0.02	h : 0.02	
c : 0.14	] : 0.12	g : 0.10	d : 0.08	2 : 0.08	= : 0.08	i : 0.08	e : 0.06	b : 0.06	: : 0.04	a : 0.04	f : 0.04	3 : 0.04	4 : 0.02	h : 0.02	
] : 0.16	d : 0.14	g : 0.12	c : 0.10	= : 0.08	i : 0.08	e : 0.06	a : 0.04	: : 0.04	b : 0.04	2 : 0.04	f : 0.04	4 : 0.02	h : 0.02	3 : 0.02	
d : 0.19	g : 0.16	c : 0.12	e : 0.08	a : 0.08	] : 0.06	= : 0.06	f : 0.06	2 : 0.06	i : 0.06	b : 0.04	h : 0.02	

#score	718.617089670418
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_UTR_m2_run2.txt

#BEAR
iiiiiiiiinnnnniiiiiiiii:	chr2:85766825-85767087(+)$1	262	103	127	12.9985
""ccc[bboooooobb]ccc333a	chr7:151216147-151216390(-)$1	243	132	156	8.6028
c[ddddcccnnnnnccc]dddd]c	chr20:32250010-32250258(-)$1	248	74	98	11.3125
e!!ccc[bbnnnnnbb]ccc22ee	chr1:206858254-206858556(+)$1	302	127	151	11.6269
ddd[eeeeennnnneeeee]dddd	chr9:94710793-94711037(-)$1	244	96	120	10.3192
""gggggggnnnnngggggggbb]	chr11:804904-805169(-)$1	265	81	105	12.2917
!eeeee[bbnnnnnbb22eeeee2	chr1:26232350-26232662(-)$1	312	118	142	10.5342
!!gggggggnnnnnggggggg22b	chr1:29508215-29508471(-)$1	256	49	73	12.8119
ggggggcccooooooccc]ggggg	chr19:5935626-5935906(-)$1	280	76	100	9.5222
=========nnnnn==========	chr20:62330870-62331118(-)$1	248	64	88	14.1005
cc[bb[cccnnnnnccc]bb]ccc	chr3:186648426-186648689(+)$1	263	28	52	11.7988
==========lll==========:	chr1:154193655-154193948(+)$1	293	203	227	9.4435
iiiiiiiiinnnnniiiiiiiiiC	chr7:1498849-1499105(-)$1	256	0	24	12.9494
=========oooooo=========	chr4:2366105-2366372(-)$1	267	192	216	10.5446
iiiiiiiiooooooiiiiiiiiic	chr8:144669037-144669275(-)$1	238	43	67	10.3398
fffbb[cccnnnnnccc]bb22ff	chr11:64073718-64074009(+)$1	291	7	31	10.8067
dd!!eeeeennnnneeeee333dd	chr11:66393977-66394232(+)$1	255	36	60	11.1404
hhhh!!cccnnnnnccc22hhhhh	chr17:80417095-80417413(+)$1	318	45	69	11.6355
gggggg[bboooooobb]gggggg	chr6:3259135-3259452(+)$1	317	238	262	9.0770
####eeeeennnnneeeee4444e	chr1:38396787-38397085(-)$1	298	126	150	10.9954
!!ccc[cccnnnnnccc]ccc22b	chr10:7451145-7451405(-)$1	260	156	180	12.7256
[dddd[cccnnnnncccdddd]ee	chr19:15442555-15442794(-)$1	239	140	164	11.3676
eeeee[cccnnnnnccc22eeeee	chr1:36790328-36790584(+)$1	256	3	27	11.1920
dd!!eeeeennnnneeeee]dddd	chr6:53213462-53213699(-)$1	237	114	138	10.5915
!!bb[ddddnnnnndddd]bb]cc	chr19:13263015-13263304(+)$1	289	205	229	10.7295
=========nnnnn==========	chr8:145013650-145013901(-)$1	251	8	32	14.1005
::gggggggnnnnngggggggeee	chr3:49050675-49050919(+)$1	244	68	92	10.1884
a[bb[ddddnnnnnddddbb]a]f	chr10:135207607-135207905(+)$1	298	161	185	10.1640
!hhhhhhhhnnnnnhhhhhhhhee	chr19:18530793-18531047(+)$1	254	63	87	11.0227
[eeeee[bbnnnnnbbeeeee22d	chr2:232574479-232574725(+)$1	246	183	207	11.0417
gggggddddnnnnndddd]ggggg	chr19:50181361-50181608(+)$1	247	4	28	11.6324
hhhhhh[bbnnnnnbb]hhhhhhh	chr20:32254363-32254599(-)$1	236	110	134	10.9173
fffffa[bbnnnnnbb]a]fffff	chr6:4776694-4776925(+)$1	231	167	191	10.4350
==========lll==========:	chr12:7053359-7053686(+)$1	327	302	326	9.4435
###ggggggglllggggggg333c	chr7:924149-924397(+)$1	248	128	152	8.6066
=$$$$$cccnnnnnccc=======	chr5:661844-662104(+)$1	260	231	255	12.0563
[ccc!!cccnnnnnccc22ccc]c	chr17:80871414-80871749(+)$1	335	200	224	12.7458
gggg[a[bbnnnnnbb]a]ggggg	chr11:61583294-61583550(-)$1	256	86	110	12.5538
$hhhhhhhhnnnnnhhhhhhhhff	chr16:1413696-1413983(-)$1	287	235	259	10.5983
dd!!eeeeennnnneeeee333dd	chr11:66393900-66394149(+)$1	249	113	137	11.1404
[ccceeeeennnnneeeee]ccc]	chr12:93964937-93965207(+)$1	270	155	179	11.3979
###ccc[bbnnnnnbbccc22ccc	chr1:15250644-15250898(+)$1	254	13	37	11.6496
iiiiiiiiinnnnniiiiiiiiic	chr22:19710935-19711164(+)$1	229	159	183	13.9268
ddddeeeeennnnneeeee]dddd	chr2:240322470-240322754(-)$1	284	38	62	10.0180
!bb[bb[bbnnnnnbbbb]bb22c	chr17:42255544-42255813(-)$1	269	154	178	10.1520
[==========lll==========	chr6:74229915-74230138(-)$1	223	192	216	10.3984
hhh[a!!bbnnnnnbba]hhhhhh	chrX:153059258-153059690(-)$1	432	192	216	11.3910
gg[ccccccnnnnnccc22cccgg	chr21:44269381-44269632(-)$1	251	110	134	12.3221
fffff[cccnnnnncccffffffB	chr2:242255268-242255561(+)$1	293	16	40	9.9819
=========oooooo=========	chrX:41193694-41193956(+)$1	262	223	247	10.5446
hhhhh[cccnnnnnccc]hhhhhh	chr16:28875353-28875643(+)$1	290	15	39	11.8174
!gggggggannnnna]ggggggg]	chr1:2123586-2123831(-)$1	245	32	56	12.8943
[hhhhhhhhnnnnnhhhhhhhh]b	chr7:856948-857329(+)$1	381	337	361	11.1144
========[allla]=========	chr5:154136663-154136895(+)$1	232	10	34	10.4461
dddd!!cccnnnnnccc4444ddd	chr21:46933946-46934214(-)$1	268	201	225	11.2866
[bb[addddnnnnndddd]a]bbc	chr19:56152188-56152433(+)$1	245	175	199	10.4136

#otherMatches

#Seq PSSM
ACCACGUGUUUGCCGCAUGUGGUA	chr2:85766825-85767087(+)$1	262	103	127	12.9985
AGUCCGGGUCUCGUCUGGGGAAGU	chr7:151216147-151216390(-)$1	243	132	156	8.6028
UUUGGUCCUUUUGUGGGAACUAUA	chr20:32250010-32250258(-)$1	248	74	98	11.3125
GAGCCAGCGGCGCGCGGUGGGACC	chr1:206858254-206858556(+)$1	302	127	151	11.6269
GCUGGGAGCUGCGCGCUCCAGGUA	chr9:94710793-94711037(-)$1	244	96	120	10.3192
GAUCCCGAGCCUGCCUCGGGGCUG	chr11:804904-805169(-)$1	265	81	105	12.2917
GGUUCCCCAUUGUCUGAAGGGACG	chr1:26232350-26232662(-)$1	312	118	142	10.5342
CUCGCGAGCUGCGUGCUCGCGUAC	chr1:29508215-29508471(-)$1	256	49	73	12.8119
UGAGAAGAGACCACCCUUGUUUUC	chr19:5935626-5935906(-)$1	280	76	100	9.5222
GAGAACCUCCCGGAGGGGUUCUCU	chr20:62330870-62331118(-)$1	248	64	88	14.1005
GAGUCACCUGGGGGAGGGGAGUCC	chr3:186648426-186648689(+)$1	263	28	52	11.7988
GGGCCUUGCCUGAGGUAGGGCUCU	chr1:154193655-154193948(+)$1	293	203	227	9.4435
GUCCGGCUCAGCUGGGGCUGGGCG	chr7:1498849-1499105(-)$1	256	0	24	12.9494
AGCUGCCAGCCUUUCCUGGCAGUU	chr4:2366105-2366372(-)$1	267	192	216	10.5446
uucucggaccacacuuugagaacU	chr8:144669037-144669275(-)$1	238	43	67	10.3398
GAGGCGUAGCAACUUUAGGCAACU	chr11:64073718-64074009(+)$1	291	7	31	10.8067
ACAAAGUCCUCGCUGGAUUACCGU	chr11:66393977-66394232(+)$1	255	36	60	11.1404
UUGUCUCCAGGCCAUGGCAACAAC	chr17:80417095-80417413(+)$1	318	45	69	11.6355
UGGGUGGGGGCCACGCCGCACCUG	chr6:3259135-3259452(+)$1	317	238	262	9.0770
ACGAUAGAGUCUUCCUUUGGGUGA	chr1:38396787-38397085(-)$1	298	126	150	10.9954
GAGGUGCUUAUUAAAAGGACUAAC	chr10:7451145-7451405(-)$1	260	156	180	12.7256
cggcccgggUAAGUCCCGGCCUGG	chr19:15442555-15442794(-)$1	239	140	164	11.3676
CUGGGUGUCUUUGUGACUGUUUAG	chr1:36790328-36790584(+)$1	256	3	27	11.1920
CGGGGGCCGCCGCUCGGCCAUGAC	chr6:53213462-53213699(-)$1	237	114	138	10.5915
CUGGAGGCCCCAGUGGCCCCCUUU	chr19:13263015-13263304(+)$1	289	205	229	10.7295
GGAGGGGGCUGCUUGCUCCUUCCC	chr8:145013650-145013901(-)$1	251	8	32	14.1005
CAGCUGUUUGUACGAGACGGCCAG	chr3:49050675-49050919(+)$1	244	68	92	10.1884
CUGGCGGGAGAACUUCCCCCUGUG	chr10:135207607-135207905(+)$1	298	161	185	10.1640
AUCCCCGAGCGGGUCUCGGGGGUC	chr19:18530793-18531047(+)$1	254	63	87	11.0227
CAGGGGCUCUCAGUGACCCCUUCU	chr2:232574479-232574725(+)$1	246	183	207	11.0417
GACAUCUUUUUCAUGGGGCGUGUC	chr19:50181361-50181608(+)$1	247	4	28	11.6324
UCAGCCCUUGCUGAGAUGGCUGAC	chr20:32254363-32254599(-)$1	236	110	134	10.9173
GCGGAGUGCAAGAGGCUCGUCCGU	chr6:4776694-4776925(+)$1	231	167	191	10.4350
GCGUUCUCCGCCCCGGAGAAUGCA	chr12:7053359-7053686(+)$1	327	302	326	9.4435
UCUGAAGAGGAGCCCUUUUCUGUG	chr7:924149-924397(+)$1	248	128	152	8.6066
AGUGGGGGCGUGGGGCCUCUCCCU	chr5:661844-662104(+)$1	260	231	255	12.0563
AUUGAUGUCCCCCAGGCUCCAGAG	chr17:80871414-80871749(+)$1	335	200	224	12.7458
CGUCGUGUGAAGACUGGAGGACGC	chr11:61583294-61583550(-)$1	256	86	110	12.5538
UCCUGGGGCUGUGUGCCCUGGGGC	chr16:1413696-1413983(-)$1	287	235	259	10.5983
ACAAAGUCCUCGCUGGAUUACCGU	chr11:66393900-66394149(+)$1	249	113	137	11.1404
GGGCUUCCGCAGCUCGGAGCGCCG	chr12:93964937-93965207(+)$1	270	155	179	11.3979
AUUCCUCGCGUGCAGCAGGCGCGG	chr1:15250644-15250898(+)$1	254	13	37	11.6496
GGGCUCCGGUGAGUCUGGAGUCCG	chr22:19710935-19711164(+)$1	229	159	183	13.9268
CCGCCUGGCUCGACGCUGGAGUGG	chr2:240322470-240322754(-)$1	284	38	62	10.0180
AGCGCGCACAGCUAGUCGGGCCAG	chr17:42255544-42255813(-)$1	269	154	178	10.1520
AGGGGUUUUAUGCGAUGGAGUUUC	chr6:74229915-74230138(-)$1	223	192	216	10.3984
UCUGCAUCGGGUGGCGGGGGGCCC	chrX:153059258-153059690(-)$1	432	192	216	11.3910
GCACGGGCCUGGCUGGCACCCGGU	chr21:44269381-44269632(-)$1	251	110	134	12.3221
CGCCUGCGCGCUgggcggggcggg	chr2:242255268-242255561(+)$1	293	16	40	9.9819
AGGCCCUUUUGGCUUGGAGGGCUU	chrX:41193694-41193956(+)$1	262	223	247	10.5446
CCGGGGGCUGGAGAGGCACUCGGC	chr16:28875353-28875643(+)$1	290	15	39	11.8174
GUCCAGGCCUUGGUGUGUCUGGAA	chr1:2123586-2123831(-)$1	245	32	56	12.8943
UAAAGCUUUGUAUGAAGGCUUUUG	chr7:856948-857329(+)$1	381	337	361	11.1144
UGUGCGCGGCGCGGGUGUGUGCGC	chr5:154136663-154136895(+)$1	232	10	34	10.4461
GCAGCCUGCUCACUGCACCCACUG	chr21:46933946-46934214(-)$1	268	201	225	11.2866
CGGCGCCUUUUCCCAGGGACUCCG	chr19:56152188-56152433(+)$1	245	175	199	10.4136

#DB
(((((((((.....))))))))).	chr2:85766825-85767087(+)$1	1	103	127	12.9985
..(((.((......)).)))...)	chr7:151216147-151216390(-)$1	1	132	156	8.6028
(.(((((((.....))).)))).)	chr20:32250010-32250258(-)$1	1	74	98	11.3125
(..(((.((.....)).)))..))	chr1:206858254-206858556(+)$1	1	127	151	11.6269
(((.(((((.....))))).))))	chr9:94710793-94711037(-)$1	1	96	120	10.3192
..(((((((.....))))))))).	chr11:804904-805169(-)$1	1	81	105	12.2917
.(((((.((.....))..))))).	chr1:26232350-26232662(-)$1	1	118	142	10.5342
..(((((((.....)))))))..)	chr1:29508215-29508471(-)$1	1	49	73	12.8119
(((((((((......))).)))))	chr19:5935626-5935906(-)$1	1	76	100	9.5222
(((((((((.....))))))))))	chr20:62330870-62331118(-)$1	1	64	88	14.1005
((.((.(((.....))).)).)))	chr3:186648426-186648689(+)$1	1	28	52	11.7988
((((((((((...)))))))))).	chr1:154193655-154193948(+)$1	1	203	227	9.4435
(((((((((.....)))))))))(	chr7:1498849-1499105(-)$1	1	0	24	12.9494
(((((((((......)))))))))	chr4:2366105-2366372(-)$1	1	192	216	10.5446
((((((((......)))))))))(	chr8:144669037-144669275(-)$1	1	43	67	10.3398
(((((.(((.....))).))..))	chr11:64073718-64074009(+)$1	1	7	31	10.8067
((..(((((.....)))))...))	chr11:66393977-66394232(+)$1	1	36	60	11.1404
((((..(((.....)))..)))))	chr17:80417095-80417413(+)$1	1	45	69	11.6355
((((((.((......)).))))))	chr6:3259135-3259452(+)$1	1	238	262	9.0770
....(((((.....)))))....)	chr1:38396787-38397085(-)$1	1	126	150	10.9954
..(((.(((.....))).)))..)	chr10:7451145-7451405(-)$1	1	156	180	12.7256
.((((.(((.....))))))).))	chr19:15442555-15442794(-)$1	1	140	164	11.3676
(((((.(((.....)))..)))))	chr1:36790328-36790584(+)$1	1	3	27	11.1920
((..(((((.....))))).))))	chr6:53213462-53213699(-)$1	1	114	138	10.5915
..((.((((.....)))).)).))	chr19:13263015-13263304(+)$1	1	205	229	10.7295
(((((((((.....))))))))))	chr8:145013650-145013901(-)$1	1	8	32	14.1005
..(((((((.....)))))))(((	chr3:49050675-49050919(+)$1	1	68	92	10.1884
(.((.((((.....)))))).).)	chr10:135207607-135207905(+)$1	1	161	185	10.1640
.((((((((.....))))))))))	chr19:18530793-18531047(+)$1	1	63	87	11.0227
.(((((.((.....)))))))..)	chr2:232574479-232574725(+)$1	1	183	207	11.0417
(((((((((.....)))).)))))	chr19:50181361-50181608(+)$1	1	4	28	11.6324
((((((.((.....)).)))))))	chr20:32254363-32254599(-)$1	1	110	134	10.9173
((((((.((.....)).).)))))	chr6:4776694-4776925(+)$1	1	167	191	10.4350
((((((((((...)))))))))).	chr12:7053359-7053686(+)$1	1	302	326	9.4435
...(((((((...)))))))...)	chr7:924149-924397(+)$1	1	128	152	8.6066
(.....(((.....))))))))))	chr5:661844-662104(+)$1	1	231	255	12.0563
.(((..(((.....)))..))).)	chr17:80871414-80871749(+)$1	1	200	224	12.7458
((((.(.((.....)).).)))))	chr11:61583294-61583550(-)$1	1	86	110	12.5538
.((((((((.....))))))))))	chr16:1413696-1413983(-)$1	1	235	259	10.5983
((..(((((.....)))))...))	chr11:66393900-66394149(+)$1	1	113	137	11.1404
.((((((((.....))))).))).	chr12:93964937-93965207(+)$1	1	155	179	11.3979
...(((.((.....)))))..)))	chr1:15250644-15250898(+)$1	1	13	37	11.6496
(((((((((.....))))))))))	chr22:19710935-19711164(+)$1	1	159	183	13.9268
(((((((((.....))))).))))	chr2:240322470-240322754(-)$1	1	38	62	10.0180
.((.((.((.....)))).))..)	chr17:42255544-42255813(-)$1	1	154	178	10.1520
.((((((((((...))))))))))	chr6:74229915-74230138(-)$1	1	192	216	10.3984
(((.(..((.....))).))))))	chrX:153059258-153059690(-)$1	1	192	216	11.3910
((.((((((.....)))..)))))	chr21:44269381-44269632(-)$1	1	110	134	12.3221
(((((.(((.....)))))))))(	chr2:242255268-242255561(+)$1	1	16	40	9.9819
(((((((((......)))))))))	chrX:41193694-41193956(+)$1	1	223	247	10.5446
(((((.(((.....))).))))))	chr16:28875353-28875643(+)$1	1	15	39	11.8174
.((((((((.....).))))))).	chr1:2123586-2123831(-)$1	1	32	56	12.8943
.((((((((.....)))))))).)	chr7:856948-857329(+)$1	1	337	361	11.1144
((((((((.(...).)))))))))	chr5:154136663-154136895(+)$1	1	10	34	10.4461
((((..(((.....)))....)))	chr21:46933946-46934214(-)$1	1	201	225	11.2866
.((.(((((.....)))).).)))	chr19:56152188-56152433(+)$1	1	175	199	10.4136

#PSSM
= : 0.14	! : 0.12	[ : 0.12	d : 0.10	g : 0.08	i : 0.07	h : 0.07	f : 0.05	# : 0.05	" : 0.03	c : 0.03	e : 0.03	: : 0.01	a : 0.01	$ : 0.01	
= : 0.14	d : 0.12	h : 0.12	g : 0.10	i : 0.07	! : 0.07	e : 0.05	c : 0.05	f : 0.05	# : 0.05	" : 0.03	[ : 0.03	b : 0.03	: : 0.01	$ : 0.01	
g : 0.14	= : 0.14	h : 0.12	d : 0.08	i : 0.07	c : 0.07	! : 0.07	b : 0.07	e : 0.05	f : 0.05	# : 0.05	[ : 0.03	$ : 0.01	
g : 0.16	= : 0.14	c : 0.12	h : 0.10	i : 0.07	d : 0.07	[ : 0.07	b : 0.07	e : 0.05	! : 0.05	f : 0.03	# : 0.01	$ : 0.01	
e : 0.17	g : 0.14	= : 0.14	c : 0.08	h : 0.08	i : 0.07	b : 0.05	! : 0.05	[ : 0.05	d : 0.03	f : 0.03	a : 0.03	$ : 0.01	
e : 0.16	[ : 0.14	= : 0.14	g : 0.12	d : 0.08	i : 0.07	! : 0.07	h : 0.07	c : 0.05	a : 0.03	$ : 0.01	b : 0.01	
c : 0.24	[ : 0.16	= : 0.14	e : 0.12	g : 0.08	i : 0.07	d : 0.07	h : 0.05	b : 0.01	! : 0.01	
c : 0.24	b : 0.19	= : 0.14	e : 0.12	g : 0.08	i : 0.07	d : 0.07	h : 0.05	
c : 0.24	b : 0.17	e : 0.12	= : 0.12	g : 0.07	d : 0.07	i : 0.05	h : 0.05	o : 0.03	a : 0.01	[ : 0.01	
n : 0.80	o : 0.10	= : 0.05	g : 0.01	a : 0.01	
n : 0.80	o : 0.10	l : 0.07	= : 0.01	
n : 0.80	o : 0.10	l : 0.08	
n : 0.80	o : 0.10	l : 0.08	
n : 0.80	o : 0.10	= : 0.03	g : 0.01	l : 0.01	a : 0.01	
c : 0.23	b : 0.17	e : 0.12	= : 0.08	i : 0.07	g : 0.07	o : 0.07	d : 0.07	h : 0.05	a : 0.01	] : 0.01	
c : 0.24	b : 0.19	= : 0.14	e : 0.12	i : 0.07	g : 0.07	d : 0.07	h : 0.05	] : 0.01	
c : 0.26	e : 0.14	= : 0.14	] : 0.08	g : 0.08	i : 0.07	d : 0.07	h : 0.05	b : 0.03	2 : 0.01	a : 0.01	
= : 0.16	e : 0.14	] : 0.12	g : 0.08	2 : 0.08	d : 0.08	i : 0.07	c : 0.07	h : 0.07	a : 0.03	b : 0.01	f : 0.01	4 : 0.01	
e : 0.16	= : 0.16	] : 0.12	g : 0.10	h : 0.10	i : 0.07	c : 0.07	2 : 0.07	b : 0.05	d : 0.03	f : 0.01	4 : 0.01	
g : 0.16	= : 0.16	h : 0.12	c : 0.08	b : 0.08	i : 0.07	] : 0.07	e : 0.05	d : 0.03	3 : 0.03	4 : 0.03	f : 0.03	2 : 0.01	a : 0.01	
= : 0.16	g : 0.14	h : 0.12	d : 0.08	i : 0.07	3 : 0.07	c : 0.07	2 : 0.05	e : 0.05	] : 0.05	4 : 0.03	b : 0.03	f : 0.03	
= : 0.16	h : 0.12	2 : 0.10	d : 0.08	g : 0.08	c : 0.08	i : 0.07	3 : 0.07	e : 0.05	b : 0.03	] : 0.03	f : 0.03	4 : 0.01	a : 0.01	
= : 0.16	e : 0.10	d : 0.10	g : 0.10	i : 0.07	] : 0.07	2 : 0.07	c : 0.07	f : 0.07	h : 0.07	3 : 0.03	b : 0.03	4 : 0.01	
c : 0.17	d : 0.12	= : 0.12	e : 0.10	g : 0.08	f : 0.07	h : 0.07	: : 0.05	] : 0.05	b : 0.05	a : 0.01	2 : 0.01	C : 0.01	B : 0.01	

#score	625.8617852943803
#seq	56
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_transcript_m2_run2.txt

#BEAR
c!!ccc"""ccceeeeeooooooeeeee]ccc]ccc333	chr22:24969257-24969530(+)$1	273	25	64	14.0146
ddd[ccc[dddd!!cccoooooocccddddccc]dddd:	chr15:42860384-42860628(+)$1	244	109	148	12.7538
ccc==========abbmmmmbb]a]==========]ccc	chr3:50643972-50644258(-)$1	286	59	98	15.5584
dd####==========aooooooa]==========22dd	chr19:7978395-7978656(+)$1	261	13	52	17.5982
[eeeee"""cccccc[aooooooa]ccc]ccceeeeecc	chr1:154929832-154930115(-)$1	283	153	192	14.5305
===========!!cccnnnnnccc4444===========	chr17:2288469-2288736(-)$1	267	162	201	17.6278
[ccc!!ggggggg[bbbbmmmmbb]bbgggggggccc22	chr7:75165033-75165271(-)$1	238	153	192	13.3146
ggg[ffffff[bb[cccmmmmcccbbffffff333gggg	chr19:47223185-47223440(-)$1	255	211	250	13.0126
=======[dddd!!ddddllldddd333dddd=======	chr20:62563217-62563458(+)$1	241	158	197	14.3895
fccc[ggggggg!!bboooooobb]gggggggccceeee	chr8:101931447-101931719(-)$1	272	116	155	15.7471
"""=========="""aooooooa333==========dd	chr1:116947112-116947452(+)$1	340	283	322	19.5048
c[ccc[a[ccc!!ddddoooooodddd22ccc]a]cccc	chr10:102121324-102121547(+)$1	223	28	67	13.8626
ffffffggggggg!!bbmmmmbb22ggggggg22fffff	chr16:31132354-31132612(+)$1	258	134	173	12.4218
ddd!!eeeee####cccooooooccc22eeeee22dddd	chr12:120118440-120118704(+)$1	264	141	180	13.0557
eeee=============oooooo=============000	chr10:74035341-74035569(+)$1	228	169	208	16.6319
=====$$$$$gggggggmmmmggggggg==========]	chr17:37076690-37076900(+)$1	210	108	147	15.6579
=========[ccc[bboooooobb]ccc]==========	chr16:30785763-30786011(+)$1	248	69	108	19.1586
ggggg"""hhhhhhhhoooooohhhhhhhh]ggggggg2	chr17:57771910-57772162(+)$1	252	162	201	13.3395
e"""==========bbnnnnnbb333==========333	chr19:4657705-4658007(-)$1	302	113	152	16.8159
ccc!!ggggggg[ddddmmmmdddd]gggggggccc333	chr17:45923614-45923914(-)$1	300	235	274	14.0227
ggggggg!!ffffffooooooffffff]ggggggg]bb]	chr6:34840401-34840660(+)$1	259	155	194	13.2422
c"""ccc!!ccc!!ddddoooooodddd22ccc]ccc22	chr22:36863363-36863589(-)$1	226	60	99	12.7738
gggggg####gggggggnnnnnggggggggggggggddd	chr19:19467386-19467635(+)$1	249	81	120	13.7403
""ffffff!!ccc[cccmmmmccc]cccffffff333dd	chr5:145668364-145668682(+)$1	318	201	240	13.8805
iii$$$$$eeeee[cccmmmmccc]eeeee]iiiiiiii	chr17:36882519-36882815(+)$1	296	19	58	14.4508
=============[cccmmmmccc]=============2	chr16:8948281-8948545(-)$1	264	110	149	19.2824
=======[bb[a[ddddmmmmdddd]abb==========	chr17:74266737-74267048(+)$1	311	174	213	14.9684
============"""bblllbb333==============	chr15:42707551-42707781(-)$1	230	27	66	17.5549
!ggggggg[ccc!!cccmmmmccc22ccc333ggggggg	chr8:8093598-8093932(-)$1	334	143	182	16.1709
iiiiiiiii$$$$$bboooooobb22iiiiiiiii]ddd	chr16:4506378-4506677(+)$1	299	85	124	16.3784
==========[ffffffnnnnnffffff]==========	chr17:43221166-43221526(+)$1	360	245	284	15.2785
hhddddggggggg[aooooooa]ggggggg4444dddd]	chr2:131808329-131808573(-)$1	244	137	176	14.0361
[eeeee[ffffff[cccnnnnncccffffff333eeeee	chr9:131571101-131571338(+)$1	237	54	93	12.0564
eee[eeeeedddd[cccmmmmcccdddd4444eeeee]e	chr17:38291760-38292015(+)$1	255	68	107	11.4042
hhhffffffccc!!cccooooooccc4444ccc333fff	chr11:118916429-118916640(-)$1	211	85	124	14.4168
============!!cccmmmmccc==============f	chr11:75283624-75283882(+)$1	258	88	127	18.9921
========iiiiiiiiimmmmiiiiiiiii22=======	chr11:490591-490877(+)$1	286	181	220	17.3051
:ccc[cccddddcccooooooccc333dddd333ccc]c	chr7:151075274-151075489(+)$1	215	84	123	13.0152
==============qqqqqqqq==============444	chr11:61067118-61067432(-)$1	314	260	299	14.2253
[bb####ccc!!a[cccmmmmccc]a]ccc22bb]====	chr11:60619662-60619925(-)$1	263	152	191	14.8664
ffff"""ccc[bb[bboooooobb22bb]ccc333ffff	chr7:98993697-98993960(-)$1	263	54	93	14.0544
gggg[hhhhhhhh[cccooooooccchhhhhhhhggggg	chr17:73314246-73314465(-)$1	219	150	189	13.4572
e[===========[cccmmmmccc]===========]ee	chr11:33095198-33095468(+)$1	270	97	136	18.4821
========!!eeeee[aooooooa]eeeee22=======	chr1:33789188-33789423(-)$1	235	47	86	16.8505
dddd!!ggggggg[cccnnnnnccc22gggggggdddd]	chrX:54587314-54587586(+)$1	272	122	161	13.9536
""ccc!!ggggggg[bbmmmmbbggggggg22cccdddd	chr1:32372982-32373258(-)$1	276	233	272	13.5127
""ccc[accc"""ddddmmmmdddd333ccc]a]ccc33	chr22:36884473-36884713(-)$1	240	157	196	13.6302
iiiiiiii[dddd[cccoooooocccdddd]iiiiiiii	chr7:92239762-92240006(-)$1	244	19	58	16.7261
========[bb[ccc[aooooooa]cccbb]========	chr1:28218167-28218442(-)$1	275	144	183	17.6002
gggggcccffffffcccmmmmccc333ffffff333ccc	chr9:139253715-139253971(+)$1	256	58	97	13.7943
iiiiiiiii[ccca[bbnnnnnbb]a]ccc22iiiiiii	chr11:61567101-61567313(-)$1	212	160	199	15.1183
dddddddd!!ccc[bboooooobbccc4444dddd]ddd	chr17:1421585-1421883(-)$1	298	12	51	12.5316
iiiiiiiii$$$$$cccmmmmccc4444iiiiiiiiiCC	chr18:57570291-57570565(+)$1	274	74	113	14.0747
###ccc[ccc[bb[bboooooobbbbcccccc333gggg	chr1:160967676-160967944(-)$1	268	110	149	14.7135
====[eeeee!!a[aooooooaa22eeeee=========	chr1:15988718-15989006(+)$1	288	103	142	16.3428
dddd!!ggggggg[a[ammmma22a]ggggggg22dddd	chr1:226107680-226107981(-)$1	301	202	241	13.8236

#otherMatches

#Seq PSSM
UCUUGCCAGGUAUUCAUUAUGGUAUGAGCUACAGCAUAA	chr22:24969257-24969530(+)$1	273	25	64	14.0146
ggaggcuaggcaguccaagaacauggugccagcaucuag	chr15:42860384-42860628(+)$1	244	109	148	12.7538
CUGUGGCGCAGGCCCCGGGGGGAGUGCCUGUGCUGUCAG	chr3:50643972-50644258(-)$1	286	59	98	15.5584
gcugagggugggggugcgagguggUCACUCCCAUCGUGC	chr19:7978395-7978656(+)$1	261	13	52	17.5982
AUGGGGUGUGGCCCUCGGAGAAGUUAGGAGUCCCCCAGC	chr1:154929832-154930115(-)$1	283	153	192	14.5305
CAGAGGAGGUCAGCAAAGGUCUUGAAUAGAUUUUCUCUG	chr17:2288469-2288736(-)$1	267	162	201	17.6278
agagguugcagugagcugagaucacgccauuguacucca	chr7:75165033-75165271(-)$1	238	153	192	13.3146
GGCAGCCGGGAGCCUCAGAGCUGAGCCCCGGCCUGGCUG	chr19:47223185-47223440(-)$1	255	211	250	13.0126
CUCGGGGUCUGGUCCACACUCUGUGCUCCCAGCCUUGAG	chr20:62563217-62563458(+)$1	241	158	197	14.3895
AGCCACAAUGUUCUUGGCCCAUCAUGACAUUGGGUAGCA	chr8:101931447-101931719(-)$1	272	116	155	15.7471
AUUUGUCUGUGCCCUCGUCGCUUCUUUGGUACAGAUGUC	chr1:116947112-116947452(+)$1	340	283	322	19.5048
AUGCUUCCUUUCUCUCCUGGCUCGGGGUAAAAAGUGGCU	chr10:102121324-102121547(+)$1	223	28	67	13.8626
uggaguacaguggaaugaucucggcucacuguaaacucc	chr16:31132354-31132612(+)$1	258	134	173	12.4218
GGCCUGGCUAUGGAACUAAAUACAGUGUUGGUCUUGCCU	chr12:120118440-120118704(+)$1	264	141	180	13.0557
GGUGGGUGUCAGGGAUCACUUGGGAUCUUUGACACUUGA	chr10:74035341-74035569(+)$1	228	169	208	16.6319
UCCCUUGGCACACUUGUACCCACAGGUGAGGGGCAGGAC	chr17:37076690-37076900(+)$1	210	108	147	15.6579
AAAUGAGGACCAGUGAGCCAUGUCCUUGUUCCUUGUUUG	chr16:30785763-30786011(+)$1	248	69	108	19.1586
UGUUUGUGGAAUUUGAAAUUACUCAAAUUUAAAAUAAAU	chr17:57771910-57772162(+)$1	252	162	201	13.3395
UGACGUUGCCUUGUCCGGAGGGGCUUGCAGGGUGGCUGA	chr19:4657705-4658007(-)$1	302	113	152	16.8159
CAGAUUGGGGGUGUCUCAUCAGAGGGACCUCCACUGGUU	chr17:45923614-45923914(-)$1	300	235	274	14.0227
UUUGCUUCCUUCACAGGCCUGUGUGAACAAGCAAAAGUA	chr6:34840401-34840660(+)$1	259	155	194	13.2422
CCUUGGUCCUCAUCUUGGUCCCUUCCAAUCUGAAACCUC	chr22:36863363-36863589(-)$1	226	60	99	12.7738
GAUCUGGAGCCCAGGGACUUUCUUCCUGGCAGAUCUGUG	chr19:19467386-19467635(+)$1	249	81	120	13.7403
GUUGAAUUUCUAACUGUUUAUACAUUUAAAUUCAUAUAU	chr5:145668364-145668682(+)$1	318	201	240	13.8805
CUUUGUUUGCACUAUUGGACUUAGGAGUGCCGAGGGUGG	chr17:36882519-36882815(+)$1	296	19	58	14.4508
AUGUUGCCUUUUGGUGCCUUUGCAGUGGGAGGCGGCAUA	chr16:8948281-8948545(-)$1	264	110	149	19.2824
UGAUGGAGUGAUGUUGUGGGCACAAGGCAUCUGUCAGCU	chr17:74266737-74267048(+)$1	311	174	213	14.9684
ggguuuauggauaggcuucaagagggucugugagccccc	chr15:42707551-42707781(-)$1	230	27	66	17.5549
GAGCGCUGAUGGACCGUCACUACGUCCCAGUCCAGCGCU	chr8:8093598-8093932(-)$1	334	143	182	16.1709
UUUUCCUUUGUAAAUGUUGAUUCAGAAAAGGAAAGCACA	chr16:4506378-4506677(+)$1	299	85	124	16.3784
GGGGAGGGGGAUGAGCGCAGUUUGCUCGCUUUCCUCCCC	chr17:43221166-43221526(+)$1	360	245	284	15.2785
UCCCAGUGCAGUGGUGGUUUGAGUGCUGUGGGCUCUGGU	chr2:131808329-131808573(-)$1	244	137	176	14.0361
GCCCCUGCUUUCUGCCCAGGGAGGGAGAAGGAAGAGGGG	chr9:131571101-131571338(+)$1	237	54	93	12.0564
CUUAAAGAGAAUAUGUCCCCAGAUUAUUAGCACUUUUAG	chr17:38291760-38292015(+)$1	255	68	107	11.4042
UUCCCAAAGCAGGAUCCGAGCCAGGAGACACUGAGCCUU	chr11:118916429-118916640(-)$1	211	85	124	14.4168
CUUCCUUUUUUAGUUCUUCAAAGAUAGGGAGGGAAGGGG	chr11:75283624-75283882(+)$1	258	88	127	18.9921
uguguacguguguaugcguguguguacgcguguguacgc	chr11:490591-490877(+)$1	286	181	220	17.3051
UUCCCUCCCUUCCAGAAGGCACUGACUGAAGACAGGAUG	chr7:151075274-151075489(+)$1	215	84	123	13.0152
AGGAGGGUUUCAUUGUCUGUGAAGUGAGACCUUCCUUUU	chr11:61067118-61067432(-)$1	314	260	299	14.2253
ucugauccaggaggccggggccggguacugagagucugc	chr11:60619662-60619925(-)$1	263	152	191	14.8664
CCCCGGACUGUGUUGCCUGGGUGCUCAUUCAGAGAGGGG	chr7:98993697-98993960(-)$1	263	54	93	14.0544
UAUAUCAUGAAGCCUUGCUGAACUAAGUUUUGUGUGUAU	chr17:73314246-73314465(-)$1	219	150	189	13.4572
uuuuuAAAGUGUACACAUGUAUGUCUGCAUUUUAGACAG	chr11:33095198-33095468(+)$1	270	97	136	18.4821
CUGCCUCUGACCUGCCGUGUCCUUUGCAGGAAGGAGGUA	chr1:33789188-33789423(-)$1	235	47	86	16.8505
agagguugcagugagcccagacggcaccauugcacucua	chrX:54587314-54587586(+)$1	272	122	161	13.9536
UUCUUGGCUGGGUUUAGUGUACUGAUCUAGAAAAGCUGU	chr1:32372982-32373258(-)$1	276	233	272	13.5127
agugggccgaucaccugagcucaggaauucgagaccagc	chr22:36884473-36884713(-)$1	240	157	196	13.6302
AAAUGCUGUUUUCCUCAAAAGCAUGAGAAACUAGCAUUU	chr7:92239762-92240006(-)$1	244	19	58	16.7261
AGGCAGAGCCCUAGCCGAGAAACCUGCUGGCCUCUGCCU	chr1:28218167-28218442(-)$1	275	144	183	17.6002
CCAUCUAGGAGGGUGCCUCUAGGCCCCACUCUCAGGCUA	chr9:139253715-139253971(+)$1	256	58	97	13.7943
AAUUUUGUUAUCACAUCCCUAUGAAGUUGAAAAAUAAAG	chr11:61567101-61567313(-)$1	212	160	199	15.1183
CCAGUUGAAAAGCAUCCAUUAUGAGCUGAGGUCAGCCUG	chr17:1421585-1421883(-)$1	298	12	51	12.5316
AGAAACAGUUCAGUGCAUUGUUGUUGUUGCUGUUUUUGG	chr18:57570291-57570565(+)$1	274	74	113	14.0747
uaguggugcaugccuguaaucccagcugcucaggagccu	chr1:160967676-160967944(-)$1	268	110	149	14.7135
UUGACAUUUUAAUAGGGCGAGCAGGAGGGUUUAAAUCUU	chr1:15988718-15989006(+)$1	288	103	142	16.3428
UGGUGAGGAGAAAACAGGAAACGGGCUUUCUCUGAAUUG	chr1:226107680-226107981(-)$1	301	202	241	13.8236

#DB
(..(((...((((((((......))))).))).)))...	chr22:24969257-24969530(+)$1	1	25	64	14.0146
(((.(((.((((..(((......)))))))))).)))).	chr15:42860384-42860628(+)$1	1	109	148	12.7538
((((((((((((((((....)).).)))))))))).)))	chr3:50643972-50644258(-)$1	1	59	98	15.5584
((....(((((((((((......).))))))))))..))	chr19:7978395-7978656(+)$1	1	13	52	17.5982
.(((((...((((((.(......).))).))))))))))	chr1:154929832-154930115(-)$1	1	153	192	14.5305
(((((((((((..(((.....)))....)))))))))))	chr17:2288469-2288736(-)$1	1	162	201	17.6278
.(((..(((((((.((((....)).))))))))))))..	chr7:75165033-75165271(-)$1	1	153	192	13.3146
(((.((((((.((.(((....)))))))))))...))))	chr19:47223185-47223440(-)$1	1	211	250	13.0126
(((((((.((((..((((...))))...)))))))))))	chr20:62563217-62563458(+)$1	1	158	197	14.3895
)(((.(((((((..((......)).))))))))))((((	chr8:101931447-101931719(-)$1	1	116	155	15.7471
...((((((((((...(......)...))))))))))))	chr1:116947112-116947452(+)$1	1	283	322	19.5048
(.(((.(.(((..((((......))))..))).).))))	chr10:102121324-102121547(+)$1	1	28	67	13.8626
(((((((((((((..((....))..)))))))..)))))	chr16:31132354-31132612(+)$1	1	134	173	12.4218
(((..(((((....(((......)))..)))))..))))	chr12:120118440-120118704(+)$1	1	141	180	13.0557
(((((((((((((((((......)))))))))))))...	chr10:74035341-74035569(+)$1	1	169	208	16.6319
(((((.....(((((((....))))))))))))))))).	chr17:37076690-37076900(+)$1	1	108	147	15.6579
(((((((((.(((.((......)).))).))))))))))	chr16:30785763-30786011(+)$1	1	69	108	19.1586
(((((...((((((((......)))))))).))))))).	chr17:57771910-57772162(+)$1	1	162	201	13.3395
(...((((((((((((.....))...))))))))))...	chr19:4657705-4658007(-)$1	1	113	152	16.8159
(((..(((((((.((((....)))).))))))))))...	chr17:45923614-45923914(-)$1	1	235	274	14.0227
(((((((..((((((......)))))).))))))).)).	chr6:34840401-34840660(+)$1	1	155	194	13.2422
(...(((..(((..((((......))))..))).)))..	chr22:36863363-36863589(-)$1	1	60	99	12.7738
((((((....(((((((.....)))))))))))))))))	chr19:19467386-19467635(+)$1	1	81	120	13.7403
..((((((..(((.(((....))).)))))))))...))	chr5:145668364-145668682(+)$1	1	201	240	13.8805
(((.....(((((.(((....))).))))).))))))))	chr17:36882519-36882815(+)$1	1	19	58	14.4508
(((((((((((((.(((....))).))))))))))))).	chr16:8948281-8948545(-)$1	1	110	149	19.2824
(((((((.((.(.((((....)))).)))))))))))))	chr17:74266737-74267048(+)$1	1	174	213	14.9684
((((((((((((...((...))...))))))))))))))	chr15:42707551-42707781(-)$1	1	27	66	17.5549
.(((((((.(((..(((....)))..)))...)))))))	chr8:8093598-8093932(-)$1	1	143	182	16.1709
(((((((((.....((......))..))))))))).)))	chr16:4506378-4506677(+)$1	1	85	124	16.3784
((((((((((.((((((.....)))))).))))))))))	chr17:43221166-43221526(+)$1	1	245	284	15.2785
(((((((((((((.(......).)))))))....)))).	chr2:131808329-131808573(-)$1	1	137	176	14.0361
.(((((.((((((.(((.....)))))))))...)))))	chr9:131571101-131571338(+)$1	1	54	93	12.0564
(((.(((((((((.(((....)))))))....))))).)	chr17:38291760-38292015(+)$1	1	68	107	11.4042
)))(((((((((..(((......)))....)))...)))	chr11:118916429-118916640(-)$1	1	85	124	14.4168
((((((((((((..(((....))))))))))))))))))	chr11:75283624-75283882(+)$1	1	88	127	18.9921
(((((((((((((((((....)))))))))..)))))))	chr11:490591-490877(+)$1	1	181	220	17.3051
.(((.((((((((((......)))...))))...))).)	chr7:151075274-151075489(+)$1	1	84	123	13.0152
((((((((((((((........))))))))))))))...	chr11:61067118-61067432(-)$1	1	260	299	14.2253
.((....(((..(.(((....))).).)))..)).))))	chr11:60619662-60619925(-)$1	1	152	191	14.8664
((((...(((.((.((......))..)).)))...))))	chr7:98993697-98993960(-)$1	1	54	93	14.0544
((((.((((((((.(((......))))))))))))))))	chr17:73314246-73314465(-)$1	1	150	189	13.4572
(.(((((((((((.(((....))).))))))))))).))	chr11:33095198-33095468(+)$1	1	97	136	18.4821
((((((((..(((((.(......).)))))..)))))))	chr1:33789188-33789423(-)$1	1	47	86	16.8505
((((..(((((((.(((.....)))..))))))))))).	chrX:54587314-54587586(+)$1	1	122	161	13.9536
..(((..(((((((.((....)))))))))..)))))))	chr1:32372982-32373258(-)$1	1	233	272	13.5127
..(((.((((...((((....))))...))).).)))..	chr22:36884473-36884713(-)$1	1	157	196	13.6302
((((((((.((((.(((......))))))).))))))))	chr7:92239762-92240006(-)$1	1	19	58	16.7261
((((((((.((.(((.(......).))))).))))))))	chr1:28218167-28218442(-)$1	1	144	183	17.6002
(((((((((((((((((....)))...))))))...)))	chr9:139253715-139253971(+)$1	1	58	97	13.7943
(((((((((.((((.((.....)).).)))..)))))))	chr11:61567101-61567313(-)$1	1	160	199	15.1183
((((((((..(((.((......)))))....)))).)))	chr17:1421585-1421883(-)$1	1	12	51	12.5316
(((((((((.....(((....)))....)))))))))))	chr18:57570291-57570565(+)$1	1	74	113	14.0747
...(((.(((.((.((......))))))))))...))))	chr1:160967676-160967944(-)$1	1	110	149	14.7135
((((.(((((..(.(......))..))))))))))))))	chr1:15988718-15989006(+)$1	1	103	142	16.3428
((((..(((((((.(.(....)..).)))))))..))))	chr1:226107680-226107981(-)$1	1	202	241	13.8236

#PSSM
= : 0.24	d : 0.10	g : 0.10	c : 0.08	i : 0.08	[ : 0.07	" : 0.07	e : 0.07	f : 0.05	h : 0.03	! : 0.01	: : 0.01	# : 0.01	
= : 0.24	g : 0.12	d : 0.10	" : 0.10	c : 0.08	i : 0.08	e : 0.07	[ : 0.03	f : 0.03	h : 0.03	! : 0.01	b : 0.01	# : 0.01	
= : 0.26	c : 0.14	g : 0.12	d : 0.10	i : 0.08	e : 0.07	" : 0.05	f : 0.05	# : 0.03	! : 0.01	h : 0.01	b : 0.01	
= : 0.30	c : 0.14	g : 0.10	f : 0.07	i : 0.07	d : 0.07	[ : 0.05	e : 0.05	# : 0.03	! : 0.03	" : 0.03	$ : 0.01	
= : 0.32	c : 0.12	! : 0.08	g : 0.08	f : 0.07	[ : 0.07	i : 0.07	e : 0.05	# : 0.03	d : 0.03	$ : 0.01	" : 0.01	
= : 0.30	c : 0.10	e : 0.08	g : 0.08	! : 0.07	f : 0.07	i : 0.07	# : 0.03	[ : 0.03	$ : 0.03	" : 0.03	d : 0.03	h : 0.01	
= : 0.32	g : 0.16	" : 0.07	c : 0.07	i : 0.07	f : 0.05	e : 0.05	a : 0.03	$ : 0.03	# : 0.03	[ : 0.03	h : 0.01	! : 0.01	d : 0.01	
= : 0.28	g : 0.16	c : 0.10	[ : 0.07	f : 0.07	i : 0.07	" : 0.05	e : 0.05	$ : 0.03	! : 0.03	# : 0.01	h : 0.01	d : 0.01	
= : 0.23	g : 0.14	c : 0.08	! : 0.08	f : 0.07	e : 0.07	i : 0.07	d : 0.05	[ : 0.05	" : 0.03	h : 0.03	$ : 0.01	# : 0.01	b : 0.01	
= : 0.21	c : 0.17	g : 0.14	d : 0.08	f : 0.07	e : 0.05	$ : 0.05	! : 0.05	[ : 0.03	h : 0.03	b : 0.03	# : 0.01	i : 0.01	
= : 0.19	c : 0.17	g : 0.17	d : 0.08	[ : 0.08	f : 0.05	h : 0.03	e : 0.03	$ : 0.03	! : 0.03	# : 0.01	i : 0.01	" : 0.01	b : 0.01	
= : 0.17	g : 0.17	c : 0.16	d : 0.08	! : 0.07	f : 0.07	b : 0.05	h : 0.03	e : 0.03	$ : 0.03	# : 0.01	a : 0.01	i : 0.01	" : 0.01	[ : 0.01	
! : 0.16	= : 0.14	g : 0.14	c : 0.12	f : 0.07	e : 0.05	b : 0.05	h : 0.03	[ : 0.03	" : 0.03	$ : 0.03	d : 0.03	a : 0.03	# : 0.01	i : 0.01	
[ : 0.33	! : 0.14	= : 0.07	c : 0.07	d : 0.07	g : 0.05	f : 0.05	e : 0.03	a : 0.03	" : 0.03	$ : 0.03	# : 0.01	h : 0.01	i : 0.01	
c : 0.39	b : 0.16	d : 0.10	a : 0.05	e : 0.03	= : 0.03	" : 0.03	g : 0.03	f : 0.03	[ : 0.03	! : 0.01	h : 0.01	i : 0.01	q : 0.01	
c : 0.33	b : 0.23	d : 0.10	[ : 0.07	o : 0.07	= : 0.03	g : 0.03	e : 0.01	" : 0.01	h : 0.01	f : 0.01	i : 0.01	q : 0.01	
c : 0.32	o : 0.19	a : 0.10	d : 0.10	b : 0.08	n : 0.03	g : 0.03	e : 0.01	m : 0.01	= : 0.01	f : 0.01	i : 0.01	q : 0.01	
o : 0.42	m : 0.35	n : 0.12	d : 0.03	b : 0.01	l : 0.01	q : 0.01	
o : 0.44	m : 0.37	n : 0.12	l : 0.03	q : 0.01	
o : 0.44	m : 0.37	n : 0.12	l : 0.03	q : 0.01	
o : 0.44	m : 0.35	n : 0.12	b : 0.03	l : 0.01	q : 0.01	
o : 0.37	c : 0.23	b : 0.08	n : 0.08	d : 0.07	a : 0.05	m : 0.01	g : 0.01	f : 0.01	i : 0.01	q : 0.01	
c : 0.26	o : 0.24	b : 0.19	d : 0.07	] : 0.03	g : 0.03	f : 0.03	h : 0.01	3 : 0.01	i : 0.01	= : 0.01	a : 0.01	2 : 0.01	
c : 0.35	b : 0.14	a : 0.10	d : 0.08	g : 0.07	2 : 0.05	= : 0.03	3 : 0.03	f : 0.03	e : 0.01	h : 0.01	o : 0.01	i : 0.01	
] : 0.24	c : 0.14	d : 0.12	3 : 0.08	2 : 0.08	g : 0.07	= : 0.05	4 : 0.03	b : 0.03	f : 0.03	e : 0.01	h : 0.01	i : 0.01	a : 0.01	
c : 0.17	= : 0.14	3 : 0.10	g : 0.10	e : 0.07	2 : 0.07	b : 0.05	d : 0.05	] : 0.05	f : 0.05	4 : 0.03	a : 0.03	h : 0.01	i : 0.01	
= : 0.16	g : 0.14	c : 0.12	d : 0.08	3 : 0.08	e : 0.07	f : 0.07	4 : 0.05	b : 0.03	2 : 0.03	h : 0.03	i : 0.03	] : 0.03	a : 0.01	
= : 0.17	g : 0.17	c : 0.14	d : 0.08	e : 0.07	4 : 0.07	f : 0.07	3 : 0.03	2 : 0.03	h : 0.03	b : 0.03	i : 0.03	] : 0.01	
= : 0.21	g : 0.17	] : 0.08	c : 0.08	d : 0.07	f : 0.07	e : 0.07	i : 0.05	4 : 0.05	2 : 0.03	h : 0.03	b : 0.03	
= : 0.26	g : 0.17	c : 0.14	d : 0.07	f : 0.07	e : 0.07	i : 0.05	4 : 0.05	h : 0.03	2 : 0.01	3 : 0.01	b : 0.01	
= : 0.28	c : 0.16	g : 0.14	2 : 0.08	f : 0.07	] : 0.07	4 : 0.05	d : 0.03	i : 0.03	e : 0.01	3 : 0.01	h : 0.01	
= : 0.30	g : 0.16	c : 0.14	2 : 0.08	i : 0.07	f : 0.05	3 : 0.05	d : 0.03	4 : 0.03	e : 0.01	h : 0.01	] : 0.01	
= : 0.35	g : 0.14	c : 0.08	3 : 0.08	i : 0.08	e : 0.05	] : 0.03	f : 0.03	2 : 0.01	4 : 0.01	b : 0.01	h : 0.01	a : 0.01	d : 0.01	
= : 0.35	3 : 0.12	g : 0.10	i : 0.08	c : 0.07	] : 0.05	2 : 0.05	e : 0.03	a : 0.01	f : 0.01	4 : 0.01	b : 0.01	h : 0.01	d : 0.01	
= : 0.35	c : 0.14	3 : 0.10	g : 0.08	i : 0.08	d : 0.07	e : 0.05	] : 0.03	2 : 0.03	f : 0.01	
= : 0.33	c : 0.12	d : 0.10	g : 0.10	] : 0.07	e : 0.07	i : 0.07	3 : 0.05	f : 0.03	2 : 0.01	
= : 0.26	d : 0.16	c : 0.12	g : 0.08	3 : 0.07	e : 0.07	i : 0.07	f : 0.05	2 : 0.01	0 : 0.01	b : 0.01	4 : 0.01	] : 0.01	
= : 0.24	d : 0.21	g : 0.08	3 : 0.07	c : 0.07	e : 0.05	f : 0.05	i : 0.05	2 : 0.03	] : 0.03	0 : 0.01	b : 0.01	4 : 0.01	C : 0.01	
= : 0.19	d : 0.16	c : 0.08	3 : 0.07	2 : 0.07	g : 0.07	e : 0.07	f : 0.07	] : 0.07	i : 0.05	: : 0.01	0 : 0.01	4 : 0.01	C : 0.01	

#score	839.7260849468194
#seq	56
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_transcript_m3_run2.txt

#BEAR
f[cccpppppppccc]ff	chr10:43492990-43493201(+)$1	211	71	89	12.5210
eeeeepppppppeeeee:	chr11:75115614-75115831(+)$1	217	180	198	14.7147
fffrrrrrrrrrffffff	chr1:16993315-16993535(-)$1	220	198	216	9.7047
c!!bbpppppppbb4444	chr11:618794-619008(-)$1	214	73	91	11.2626
:ddddpppppppdddd:G	chr18:2716889-2717121(+)$1	232	178	196	10.7750
eeeeepppppppeeeee]	chr7:149286059-149286268(-)$1	209	80	98	15.3489
fffrrrrrrrrrffffff	chr1:17066912-17067140(+)$1	228	204	222	9.7047
eeeeepppppppeeeee:	chr3:45730378-45730589(-)$1	211	74	92	14.7147
c!!bbpppppppbb4444	chr11:618785-618994(-)$1	209	59	77	11.2626
eeeeepppppppeeeee3	chr13:41634801-41635036(-)$1	235	117	135	15.4337
eeeeepppppppeeeee:	chrM:4321-4549(+)$1	228	104	122	14.7147
eddddpppppppddddHH	chr3:45730391-45730627(-)$1	236	112	130	12.2677
eeeeepppppppeeeee2	chr4:39459954-39460161(-)$1	207	15	33	15.1917
fffrrrrrrrrrffffff	chr11:9481795-9482048(-)$1	253	96	114	9.7047
eeeeepppppppeeeee:	chr17:8125449-8125688(-)$1	239	108	126	14.7147
eeeeepppppppeeeeeG	chr7:139025376-139025600(+)$1	224	117	135	15.0754
eeeeepppppppeeeee:	chr2:27274018-27274235(+)$1	217	89	107	14.7147
eeeeepppppppeeeeeG	chr2:27273634-27273843(+)$1	209	79	97	15.0754
eeeeerrrrrrrrreeee	chr18:1691765-1691978(+)$1	213	101	119	11.3516
eeeeerrrrrrrrreeee	chr10:18934731-18934984(-)$1	253	155	173	11.3516
eeeeepppppppeeeeeG	chr15:45492508-45492745(-)$1	237	110	128	15.0754
eeeeepppppppeeeee:	chr17:73029931-73030188(+)$1	257	95	113	14.7147
fffffpppppppffffff	chr19:45981798-45982021(-)$1	223	104	122	12.9136
gggggpppppppgggggg	chr12:48153597-48153819(+)$1	222	96	114	12.5499
ddddrrrrrrrrrdddd:	chr18:1691755-1691965(+)$1	210	97	115	9.1865
eeeeepppppppeeeee3	chr13:41634760-41634980(-)$1	220	61	79	15.4337
eeeeepppppppeeeee3	chr16:18801528-18801755(-)$1	227	139	157	15.4337
eeeeepppppppeeeee]	chr19:33667905-33668141(+)$1	236	84	102	15.3489
fffffpppppppffffff	chr9:138901415-138901662(-)$1	247	133	151	12.9136
fffffpppppppffffff	chr19:45981754-45981957(-)$1	203	40	58	12.9136
eeeeepppppppeeeee:	chrM:4349-4562(+)$1	213	76	94	14.7147
dddddpppppppdddd33	chr11:62293169-62293424(-)$1	255	105	123	13.1771
gggggpppppppgggggg	chr17:76758487-76758709(-)$1	222	195	213	12.5499
ddddrrrrrrrrrdddd]	chrM:488-713(+)$1	225	99	117	9.8207
eeeeepppppppeeeee:	chr17:8125488-8125719(-)$1	231	118	136	14.7147
dddrrrrrrrrrddddee	chr5:135416087-135416329(-)$1	242	81	99	9.7603
fddddpppppppdddd33	chr13:92003090-92003317(+)$1	227	84	102	13.2882
eeeeepppppppeeeee5	chr15:89878240-89878443(+)$1	203	12	30	14.6929
eeeeepppppppeeeeeG	chr15:89878243-89878480(+)$1	237	108	126	15.0754
fffffpppppppffffff	chr19:45981775-45981998(-)$1	223	81	99	12.9136
cccrrrrrrrrrcccfff	chr5:140105664-140105891(+)$1	227	189	207	9.3097
fffffpppppppffffff	chr19:45981757-45981971(-)$1	214	54	72	12.9136
#ddddpppppppdddd33	chr7:149292176-149292421(-)$1	245	92	110	13.0451
[ddddpppppppdddd]a	chr17:33430286-33430572(-)$1	286	144	162	12.8941
:eeeeepppppppeeeee	chr3:23959240-23959465(+)$1	225	207	225	10.9323
eeeeepppppppeeeee:	chr7:149286068-149286300(-)$1	232	90	108	14.7147
!ddddpppppppdddd22	chr1:4771981-4772204(+)$1	223	141	159	12.7314
f[cccpppppppccc]ff	chr10:43492980-43493190(+)$1	210	81	99	12.5210
eeeeerrrrrrrrreeee	chr10:18934784-18935039(-)$1	255	210	228	11.3516
fffffpppppppffffff	chr11:941674-941933(+)$1	259	99	117	12.9136
eeeeepppppppeeeee]	chr10:81074843-81075127(+)$1	284	54	72	15.3489

#otherMatches

#Seq PSSM
agcuagaccacauggguu	chr10:43492990-43493201(+)$1	211	71	89	12.5210
CCACGUGAGCAUUGUGGA	chr11:75115614-75115831(+)$1	217	180	198	14.7147
ugggaaacucgacugcau	chr1:16993315-16993535(-)$1	220	198	216	9.7047
ACCCCAAAGCCAGGAACC	chr11:618794-619008(-)$1	214	73	91	11.2626
ugccaccuaugcuggcug	chr18:2716889-2717121(+)$1	232	178	196	10.7750
ccugguucaaauccaggu	chr7:149286059-149286268(-)$1	209	80	98	15.3489
ugggaaacucgacugcau	chr1:17066912-17067140(+)$1	228	204	222	9.7047
cuagguucgacuccuggc	chr3:45730378-45730589(-)$1	211	74	92	14.7147
ACCCCAAAGCCAGGAACC	chr11:618785-618994(-)$1	209	59	77	11.2626
ccugguuuucacccaggu	chr13:41634801-41635036(-)$1	235	117	135	15.4337
UCGGGCCCAUACCCCGAA	chrM:4321-4549(+)$1	228	104	122	14.7147
cuagguucgacuccuggc	chr3:45730391-45730627(-)$1	236	112	130	12.2677
CUCCAGUAGGAGUGGAGC	chr4:39459954-39460161(-)$1	207	15	33	15.1917
UCUGCAUUCCCGAGAGCU	chr11:9481795-9482048(-)$1	253	96	114	9.7047
cgggguucgauuccccga	chr17:8125449-8125688(-)$1	239	108	126	14.7147
guggguucgagucccauc	chr7:139025376-139025600(+)$1	224	117	135	15.0754
cucgcuuagcaugcgaga	chr2:27274018-27274235(+)$1	217	89	107	14.7147
gcugguucgauuccggcu	chr2:27273634-27273843(+)$1	209	79	97	15.0754
ugacaccauUAAAAUGUu	chr18:1691765-1691978(+)$1	213	101	119	11.3516
aauuuaauaauauaaaau	chr10:18934731-18934984(-)$1	253	155	173	11.3516
cucgguucgaauccgagu	chr15:45492508-45492745(-)$1	237	110	128	15.0754
cuggccuccuaagccagg	chr17:73029931-73030188(+)$1	257	95	113	14.7147
gcaggcuucaaaccugua	chr19:45981798-45982021(-)$1	223	104	122	12.9136
GAUGCCAAGCCCGCAUCC	chr12:48153597-48153819(+)$1	222	96	114	12.5499
ucagaucccacuccugac	chr18:1691755-1691965(+)$1	210	97	115	9.1865
ccugguuuucacccaggu	chr13:41634760-41634980(-)$1	220	61	79	15.4337
UGAGAGCUCCAAUUUCAU	chr16:18801528-18801755(-)$1	227	139	157	15.4337
ccugucuaguaaacagga	chr19:33667905-33668141(+)$1	236	84	102	15.3489
GGCGGCUCCUUUCUGCCC	chr9:138901415-138901662(-)$1	247	133	151	12.9136
gcaggcuucaaaccugua	chr19:45981754-45981957(-)$1	203	40	58	12.9136
UCGGGCCCAUACCCCGAA	chrM:4349-4562(+)$1	213	76	94	14.7147
GCCCUAAGGUAGAGGGAG	chr11:62293169-62293424(-)$1	255	105	123	13.1771
UUUUCUUCUUAUGGAAGU	chr17:76758487-76758709(-)$1	222	195	213	12.5499
GCUUACCUCCUCAAAGCA	chrM:488-713(+)$1	225	99	117	9.8207
cccgccugucacgcggga	chr17:8125488-8125719(-)$1	231	118	136	14.7147
GACUUUCUAUCUGUCCAU	chr5:135416087-135416329(-)$1	242	81	99	9.7603
CUACAAGAAGAAUGUAGU	chr13:92003090-92003317(+)$1	227	84	102	13.2882
GGGCGGAGGUGACGUUUU	chr15:89878240-89878443(+)$1	203	12	30	14.6929
gcagguucgaguccugcc	chr15:89878243-89878480(+)$1	237	108	126	15.0754
gcaggcuucaaaccugua	chr19:45981775-45981998(-)$1	223	81	99	12.9136
uccauaauaaaaggaucc	chr5:140105664-140105891(+)$1	227	189	207	9.3097
gcaggcuucaaaccugua	chr19:45981757-45981971(-)$1	214	54	72	12.9136
cccgguucaaauccgguu	chr7:149292176-149292421(-)$1	245	92	110	13.0451
CCUCCCAGCUCUGGAGUC	chr17:33430286-33430572(-)$1	286	144	162	12.8941
UCUCUGCUCUCCACAGGG	chr3:23959240-23959465(+)$1	225	207	225	10.9323
cuugacugcagaucaaga	chr7:149286068-149286300(-)$1	232	90	108	14.7147
AGUUUUAGGAGUGGACAG	chr1:4771981-4772204(+)$1	223	141	159	12.7314
agcuagaccacauggguu	chr10:43492980-43493190(+)$1	210	81	99	12.5210
aauuuaauaauauaaaau	chr10:18934784-18935039(-)$1	255	210	228	11.3516
caugggguuuugccaugu	chr11:941674-941933(+)$1	259	99	117	12.9136
CUGGGUCCCCUCUCCAGC	chr10:81074843-81075127(+)$1	284	54	72	15.3489

#DB
(.(((.......))).))	chr10:43492990-43493201(+)$1	1	71	89	12.5210
(((((.......))))).	chr11:75115614-75115831(+)$1	1	180	198	14.7147
(((.........))))))	chr1:16993315-16993535(-)$1	1	198	216	9.7047
(..((.......))....	chr11:618794-619008(-)$1	1	73	91	11.2626
.((((.......)))).)	chr18:2716889-2717121(+)$1	1	178	196	10.7750
(((((.......))))).	chr7:149286059-149286268(-)$1	1	80	98	15.3489
(((.........))))))	chr1:17066912-17067140(+)$1	1	204	222	9.7047
(((((.......))))).	chr3:45730378-45730589(-)$1	1	74	92	14.7147
(..((.......))....	chr11:618785-618994(-)$1	1	59	77	11.2626
(((((.......))))).	chr13:41634801-41635036(-)$1	1	117	135	15.4337
(((((.......))))).	chrM:4321-4549(+)$1	1	104	122	14.7147
)((((.......))))))	chr3:45730391-45730627(-)$1	1	112	130	12.2677
(((((.......))))).	chr4:39459954-39460161(-)$1	1	15	33	15.1917
(((.........))))))	chr11:9481795-9482048(-)$1	1	96	114	9.7047
(((((.......))))).	chr17:8125449-8125688(-)$1	1	108	126	14.7147
(((((.......))))))	chr7:139025376-139025600(+)$1	1	117	135	15.0754
(((((.......))))).	chr2:27274018-27274235(+)$1	1	89	107	14.7147
(((((.......))))))	chr2:27273634-27273843(+)$1	1	79	97	15.0754
(((((.........))))	chr18:1691765-1691978(+)$1	1	101	119	11.3516
(((((.........))))	chr10:18934731-18934984(-)$1	1	155	173	11.3516
(((((.......))))))	chr15:45492508-45492745(-)$1	1	110	128	15.0754
(((((.......))))).	chr17:73029931-73030188(+)$1	1	95	113	14.7147
(((((.......))))))	chr19:45981798-45982021(-)$1	1	104	122	12.9136
(((((.......))))))	chr12:48153597-48153819(+)$1	1	96	114	12.5499
((((.........)))).	chr18:1691755-1691965(+)$1	1	97	115	9.1865
(((((.......))))).	chr13:41634760-41634980(-)$1	1	61	79	15.4337
(((((.......))))).	chr16:18801528-18801755(-)$1	1	139	157	15.4337
(((((.......))))).	chr19:33667905-33668141(+)$1	1	84	102	15.3489
(((((.......))))))	chr9:138901415-138901662(-)$1	1	133	151	12.9136
(((((.......))))))	chr19:45981754-45981957(-)$1	1	40	58	12.9136
(((((.......))))).	chrM:4349-4562(+)$1	1	76	94	14.7147
(((((.......))))..	chr11:62293169-62293424(-)$1	1	105	123	13.1771
(((((.......))))))	chr17:76758487-76758709(-)$1	1	195	213	12.5499
((((.........)))).	chrM:488-713(+)$1	1	99	117	9.8207
(((((.......))))).	chr17:8125488-8125719(-)$1	1	118	136	14.7147
(((.........))))((	chr5:135416087-135416329(-)$1	1	81	99	9.7603
(((((.......))))..	chr13:92003090-92003317(+)$1	1	84	102	13.2882
(((((.......))))).	chr15:89878240-89878443(+)$1	1	12	30	14.6929
(((((.......))))))	chr15:89878243-89878480(+)$1	1	108	126	15.0754
(((((.......))))))	chr19:45981775-45981998(-)$1	1	81	99	12.9136
(((.........)))(((	chr5:140105664-140105891(+)$1	1	189	207	9.3097
(((((.......))))))	chr19:45981757-45981971(-)$1	1	54	72	12.9136
.((((.......))))..	chr7:149292176-149292421(-)$1	1	92	110	13.0451
.((((.......)))).)	chr17:33430286-33430572(-)$1	1	144	162	12.8941
.(((((.......)))))	chr3:23959240-23959465(+)$1	1	207	225	10.9323
(((((.......))))).	chr7:149286068-149286300(-)$1	1	90	108	14.7147
.((((.......))))..	chr1:4771981-4772204(+)$1	1	141	159	12.7314
(.(((.......))).))	chr10:43492980-43493190(+)$1	1	81	99	12.5210
(((((.........))))	chr10:18934784-18935039(-)$1	1	210	228	11.3516
(((((.......))))))	chr11:941674-941933(+)$1	1	99	117	12.9136
(((((.......))))).	chr10:81074843-81075127(+)$1	1	54	72	15.3489

#PSSM
e : 0.49	f : 0.23	d : 0.07	c : 0.05	: : 0.03	g : 0.03	# : 0.01	[ : 0.01	! : 0.01	
e : 0.49	d : 0.19	f : 0.17	[ : 0.03	! : 0.03	g : 0.03	c : 0.01	
e : 0.49	d : 0.19	f : 0.17	c : 0.05	! : 0.03	g : 0.03	
e : 0.49	d : 0.17	f : 0.11	r : 0.09	c : 0.03	b : 0.03	g : 0.03	
e : 0.49	r : 0.13	d : 0.13	f : 0.11	c : 0.03	b : 0.03	g : 0.03	
p : 0.78	r : 0.19	e : 0.01	
p : 0.80	r : 0.19	
p : 0.80	r : 0.19	
p : 0.80	r : 0.19	
p : 0.80	r : 0.19	
p : 0.80	r : 0.19	
p : 0.80	r : 0.19	
e : 0.41	f : 0.17	d : 0.15	r : 0.09	c : 0.05	b : 0.03	g : 0.03	p : 0.01	
e : 0.43	d : 0.19	f : 0.17	c : 0.05	r : 0.05	b : 0.03	g : 0.03	
e : 0.49	d : 0.19	f : 0.17	c : 0.05	4 : 0.03	g : 0.03	
e : 0.49	f : 0.19	d : 0.19	] : 0.03	4 : 0.03	g : 0.03	
e : 0.50	f : 0.23	3 : 0.05	4 : 0.03	g : 0.03	d : 0.03	: : 0.01	H : 0.01	] : 0.01	2 : 0.01	
f : 0.23	: : 0.19	3 : 0.11	G : 0.09	e : 0.09	] : 0.07	4 : 0.03	2 : 0.03	g : 0.03	H : 0.01	5 : 0.01	a : 0.01	

#score	665.4744783416002
#seq	51
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_UTR_m2_run2.txt

#BEAR
ccc####a[bb[cccooooooccc]bba333ccc>>	chr1:156845356-156845619(+)$1	263	159	195	13.0655
ccc"""eeeee!!cccnnnnnccc]eeeee333ccc	chr16:89979940-89980200(+)$1	260	161	197	18.0971
fffff"""bb!!ddddnnnnndddd22bb333ffff	chr10:52514587-52514855(+)$1	268	216	252	13.3285
ggggggg$$$$$cccooooooccc22ggggggg]cc	chr3:50367742-50368002(-)$1	260	66	102	12.3907
ggg"""bba[bb[bbnnnnnbb]bb]a]bb333ggg	chr12:122459787-122460074(+)$1	287	18	54	12.0587
ee[a[a[a[a[a[a[annnnna]a]a]a]a]a]a]e	chr2:37072882-37073160(-)$1	278	45	81	15.9312
eeeeecccccc!!cccmmmmccc22ccc4444ccc]	chr11:64073603-64073849(+)$1	246	205	241	11.1913
eeeee==========annnnna]==========:::	chr4:2070261-2070573(+)$1	312	103	139	12.3848
f[eeeeedddd!!cccnnnnnccc]dddd]eeeee]	chr5:180236596-180236920(-)$1	324	29	65	14.6309
ffffff[eeeee!!bbnnnnnbb22eeeeeffffff	chr11:64074027-64074308(+)$1	281	142	178	12.7780
cccbbeeeee[a[cccnnnnnccc333a]eeeee]b	chr14:65569016-65569307(-)$1	291	20	56	15.3243
ggggg[eeeee[a[bbnnnnnbbaeeeeeggggggg	chr20:32264118-32264372(-)$1	254	31	67	14.4378
[ccca[bb!!ffffffnnnnnffffff333bb]a]c	chr12:56991187-56991454(-)$1	267	33	69	13.0862
!!bb[ddddccc[cccnnnnnccc]ccc]dddd]bb	chr19:38800325-38800597(-)$1	272	96	132	14.7915
bb[a[ffffff[cccooooooccc22ffffffa]bb	chr19:11664159-11664391(-)$1	232	162	198	11.5039
d$$$$$ccc[ffffffnnnnnffffff]ccc4444d	chr1:27181260-27181538(+)$1	278	152	188	13.3363
ccc"""eeeee!!cccnnnnnccc]eeeee333ccc	chr16:89980030-89980326(+)$1	296	71	107	18.0971
[ddddbb[ccceeeeennnnneeeee]ccc]bb]dd	chr20:1165102-1165374(-)$1	272	147	183	12.1920
[iiiiiiiiibb[cccnnnnncccbb]iiiiiiiii	chr6:161557183-161557431(-)$1	248	180	216	15.0971
b[ccceeeeea[cccooooooccc]a]eeeee]ccc	chr12:58216961-58217254(-)$1	293	217	253	13.2572
fffff]ddddccccccnnnnnccc]cccdddd[fff	chr16:29679665-29679895(+)$1	230	140	176	13.2575
""iiiiiiiii!!eeeeeooooooeeeee4444iii	chr17:76794267-76794523(-)$1	256	202	238	10.0788
ee!!cccdddd[ddddnnnnndddddddd]ccc333	chr16:67471959-67472204(-)$1	245	203	239	14.2129
hhhh!!gggggggcccnnnnnccc]ggggggg333h	chr19:18554149-18554420(-)$1	271	27	63	15.9942
ggggg!!dddda[cccnnnnnccc]a]dddd22ggg	chr1:38462360-38462606(-)$1	246	29	65	15.9920
d####dddd[ccc!!ccclllccc333ccc]ddddd	chr19:47774827-47775044(+)$1	217	11	47	11.6016
::iiiiiiiii!!cccnnnnnccc333iiiiiiiii	chr3:14526549-14526884(+)$1	335	225	261	15.2713
ii[dddd[ccc"""bbnnnnnbb333ccc22dddd3	chr7:1887586-1887817(-)$1	231	18	54	14.2276
[abb[ccc!!ffffffnnnnnffffff]ccc]bb]a	chr7:102739988-102740241(+)$1	253	94	130	12.8765
[bb"""dddd!!ddddoooooodddd22dddd]bbf	chr21:36260455-36260740(-)$1	285	203	239	11.2184
c$$$$$ccc!!eeeeennnnneeeee22ccc333cc	chr14:55257272-55257551(+)$1	279	67	103	14.1643
#a!!bbccc$$$$$bbnnnnnbb4444ccc]bb22a	chr10:22825745-22825984(-)$1	239	45	81	13.2518
eeeeecccccc!!cccmmmmccc22ccc4444ccc]	chr11:64073725-64073999(+)$1	274	83	119	11.1913
eeee[ccc"""ddddannnnna]dddd]ccc]eeee	chr17:37076011-37076383(+)$1	372	9	45	13.3387
dd####dddda[ddddnnnnndddd]a]dddd22dd	chr6:43148843-43149102(+)$1	259	143	179	14.5115
===========[ddddoooooodddd]=========	chr16:89980226-89980522(+)$1	296	194	230	13.1634
hhhh!!gggggggcccnnnnnccc]ggggggg333h	chr19:18554253-18554494(-)$1	241	101	137	15.9942
ccc"""eeeee"""ccclllccc333eeeee22ccc	chr10:22825590-22825851(-)$1	261	206	242	13.4492
cccccceeeee!!bboooooobb]eeeee]ccc]cc	chr17:75495767-75496031(+)$1	264	148	184	12.1453
=========[ccc[bbnnnnnbb22ccc]=======	chr1:36180650-36180960(-)$1	310	21	57	15.2964
fccc[a[bb[a[ddddnnnnndddd]a]bb]a]ccc	chr20:1165207-1165450(-)$1	243	132	168	14.7068
gggg[ddddbb[ddddnnnnndddd]bb333dddd]	chr4:78740437-78740689(-)$1	252	56	92	13.5236
bddddeeeee"""cccnnnnnccc333eeeee22dd	chr22:50618323-50618634(+)$1	311	187	223	15.2464
ggg####ccc!!cccooooooccc]ccc22gggggg	chr16:29679262-29679559(+)$1	297	163	199	14.0218
ffbb!!dddd"""cccnnnnnccc22dddd]bb]ff	chr1:27181149-27181385(+)$1	236	123	159	15.3251
dddccc[ffffff[bbnnnnnbb]ffffff]ccc]d	chr16:31343238-31343518(+)$1	280	188	224	12.3870
ccc$$$$$ccceeeeennnnneeeee]ccc333ccc	chr17:38175388-38175677(-)$1	289	35	71	14.3866
[ccc[eeeee[a[cccnnnnnccc]a]eeeee]ccc	chr5:126250401-126250658(-)$1	257	185	221	16.6555
cc"""bb[a[eeeeeooooooeeeeea]bb333ccc	chr17:7477045-7477342(+)$1	297	45	81	11.8368
dddd!!eeeee!!ccclllccc22eeeee]dddd33	chr1:42643247-42643507(-)$1	260	167	203	11.0376
cc[ffffff[a[ddddnnnnndddd]a]ffffff]c	chr10:103874483-103874760(-)$1	277	159	195	13.6367
dddd"""dddd[bb[annnnna]bbdddddddd]a]	chr4:2068491-2068739(+)$1	248	145	181	12.8977

#otherMatches

#Seq PSSM
uguguguguguguAGAAGCCCCUAGGCCUGAACGAU	chr1:156845356-156845619(+)$1	263	159	195	13.0655
CCCCAAGUUCAAAGGAAAUGGUCCCUGAACCAAGGG	chr16:89979940-89980200(+)$1	260	161	197	18.0971
GGGUUGUUUAAAGGAGAGUCCCUUCAAUAUAAAACC	chr10:52514587-52514855(+)$1	268	216	252	13.3285
GGGGCCUGUGGAAUGAGUGUGCAUGGAGGCCCUCCU	chr3:50367742-50368002(-)$1	260	66	102	12.3907
GCGGCGGCCCCGGGCUUuguguguguguguaugugu	chr12:122459787-122460074(+)$1	287	18	54	12.0587
CAGAGAGAGAGAGAGAGUUAgugugugugugugugu	chr2:37072882-37073160(-)$1	278	45	81	15.9312
GCGACAGCGGGAGUAUAAGAGUGGACCUGCAGGCUG	chr11:64073603-64073849(+)$1	246	205	241	11.1913
caugcgugcgagugccuguguguguacuugcauaua	chr4:2070261-2070573(+)$1	312	103	139	12.3848
GGAGGGGGUGGAGGUCAUGUGGACGCCACGCCCCUA	chr5:180236596-180236920(-)$1	324	29	65	14.6309
AGUGGAGUGUGUGAACUCGGUGUGAGCACGUCCACU	chr11:64074027-64074308(+)$1	281	142	178	12.7780
UCACGUGGCGGGGGCCGACCGGGCGUGCGUGCCGCC	chr14:65569016-65569307(-)$1	291	20	56	15.3243
UGUGGUGUGUAUGUGCAUGCAGCCUACACCCACACG	chr20:32264118-32264372(-)$1	254	31	67	14.4378
cggccucagagcgcgcugugugugugugugugugug	chr12:56991187-56991454(-)$1	267	33	69	13.0862
gaauguaucaguggauggauaguuggcuagaugggu	chr19:38800325-38800597(-)$1	272	96	132	14.7915
CCUGCAGCCCCUGGCCCCCCAGCCUUGGGGCUCUGG	chr19:11664159-11664391(-)$1	232	162	198	11.5039
CAUCCCCUUUGAGUGUCAGAAGCACUCUGAGCCAAG	chr1:27181260-27181538(+)$1	278	152	188	13.3363
CCCCAAGUUCAAAGGAAAUGGUCCCUGAACCAAGGG	chr16:89980030-89980326(+)$1	296	71	107	18.0971
AAGAUCCGAGGGUCACACUACGUGACUUCUGGGUGU	chr20:1165102-1165374(-)$1	272	147	183	12.1920
GACCGAAGGGGACAAGUUCCCCUUUCAUCCUUUGGU	chr6:161557183-161557431(-)$1	248	180	216	15.0971
UGUCACCCUAAGAGCCACUGAGUUGUGUAGGGAUGA	chr12:58216961-58217254(-)$1	293	217	253	13.2572
gaggucucauucugucacccagacuagagggcagug	chr16:29679665-29679895(+)$1	230	140	176	13.2575
uguguguCCUAGUCACUUGGAGAAGGgugugugugg	chr17:76794267-76794523(-)$1	256	202	238	10.0788
GCCUGGGGGGAUGUUGCUCCUCAGCUCCCUCCCUCA	chr16:67471959-67472204(-)$1	245	203	239	14.2129
AUGUGGGGACCCCCCAGGGCAUGGUGGGGUCUGAGG	chr19:18554149-18554420(-)$1	271	27	63	15.9942
GGUACAGGGUGCUGCCCAGCAGGUCGCCACCGAGUG	chr1:38462360-38462606(-)$1	246	29	65	15.9920
CGAUUGGGGUGAAGAGGUGGAGCUGAAUUCUCCCCG	chr19:47774827-47775044(+)$1	217	11	47	11.6016
CAUACUGAAUUAGAUGUAUUUUAUGGGAAUUUGGUA	chr3:14526549-14526884(+)$1	335	225	261	15.2713
UUGAGGGAGGGAGAGUGGCCUGCGGACCCAGCCCUG	chr7:1887586-1887817(-)$1	231	18	54	14.2276
UGAUACCCAAACUCCUGGAGUGGGAGUGGGGAAUGC	chr7:102739988-102740241(+)$1	253	94	130	12.8765
CGCGGCGCUCGUGGGUGUUCGUGCCUCGGAGCAGCU	chr21:36260455-36260740(-)$1	285	203	239	11.2184
AGGGAGAUGGUACAAGGCCUGUUUGUUACAUGGAUG	chr14:55257272-55257551(+)$1	279	67	103	14.1643
UCUAGCUAUUUCUGACUUuguguauaugugugugug	chr10:22825745-22825984(-)$1	239	45	81	13.2518
GCGACAGCGGGAGUAUAAGAGUGGACCUGCAGGCUG	chr11:64073725-64073999(+)$1	274	83	119	11.1913
GUGGACUUGGAGCUGCACAAAGUCAGCAGGGACCAC	chr17:37076011-37076383(+)$1	372	9	45	13.3387
GGAUGAGUUGAGGUGAUAUUUUUAUGUGCAGCGACC	chr6:43148843-43149102(+)$1	259	143	179	14.5115
gugcgcauacguguguggguaaacauuuguaugugc	chr16:89980226-89980522(+)$1	296	194	230	13.1634
AUGUGGGGACCCCCCAGGGCAUGGUGGGGUCUGAGG	chr19:18554253-18554494(-)$1	241	101	137	15.9942
uuGGAGUUGAAAGAUGUGAGACAGUAUUCAGAauaa	chr10:22825590-22825851(-)$1	261	206	242	13.4492
CGUGCCUGGGCCCCUCCCCUCAGAGCCCAUGGUAAC	chr17:75495767-75496031(+)$1	264	148	184	12.1453
GCAUGUGUAGACAGGUACCCAGCAGUGUGUGUAUAU	chr1:36180650-36180960(-)$1	310	21	57	15.2964
UCACUCCCAGGGGCACUUugugugugugugugugug	chr20:1165207-1165450(-)$1	243	132	168	14.7068
GGCGGGAGCGAGGCCCGCCGUGGGUGUUUGUGUUUG	chr4:78740437-78740689(-)$1	252	56	92	13.5236
CGCGUGGCCCAUGUAUGAGGAGUGAAGGGGCCCAAC	chr22:50618323-50618634(+)$1	311	187	223	15.2464
GUUGGAAGGCUUCACCUGAGAGUGUGUCGUGGCCUU	chr16:29679262-29679559(+)$1	297	163	199	14.0218
GGCUGGUUGGUUUUAAUAAGUUUAUUCCAAGAGACC	chr1:27181149-27181385(+)$1	236	123	159	15.3251
CCGGCAGAAGGGAACUGCCUGGGCUCCCUUGUGCGU	chr16:31343238-31343518(+)$1	280	188	224	12.3870
CCGCUCCUGACUCCUGACCUCCAGGAUGUCUCCCGG	chr17:38175388-38175677(-)$1	289	35	71	14.3866
guguguguguguguUUGAGAAAGAGAGAUGUAGACA	chr5:126250401-126250658(-)$1	257	185	221	16.6555
CCGGGCAACGCGAGGGGGGGGCUUCGGCUGGAGGGA	chr17:7477045-7477342(+)$1	297	45	81	11.8368
UUUCUCUGUUGUUUGGACCCUACUUGGCAUGAAAAA	chr1:42643247-42643507(-)$1	260	167	203	11.0376
AGGGGCCCGGUGGCCUGGGGAGGGCGGGCGGGCUGC	chr10:103874483-103874760(-)$1	277	159	195	13.6367
CCAGAGCUGGGCGAAGGAGGACAUCCUCACUGGACG	chr4:2068491-2068739(+)$1	248	145	181	12.8977

#DB
(((....(.((.(((......))).)))...)))..	chr1:156845356-156845619(+)$1	1	159	195	13.0655
(((...(((((..(((.....))).)))))...)))	chr16:89979940-89980200(+)$1	1	161	197	18.0971
(((((...((..((((.....))))..))...))))	chr10:52514587-52514855(+)$1	1	216	252	13.3285
(((((((.....(((......)))..))))))).))	chr3:50367742-50368002(-)$1	1	66	102	12.3907
(((...(((.((.((.....)).)).).))...)))	chr12:122459787-122460074(+)$1	1	18	54	12.0587
((.(.(.(.(.(.(.(.....).).).).).).).)	chr2:37072882-37073160(-)$1	1	45	81	15.9312
(((((((((((..(((....)))..)))....))).	chr11:64073603-64073849(+)$1	1	205	241	11.1913
)))))(((((((((((.....).))))))))))...	chr4:2070261-2070573(+)$1	1	103	139	12.3848
(.(((((((((..(((.....))).)))).))))).	chr5:180236596-180236920(-)$1	1	29	65	14.6309
((((((.(((((..((.....))..)))))))))))	chr11:64074027-64074308(+)$1	1	142	178	12.7780
((((((((((.(.(((.....)))...).))))).)	chr14:65569016-65569307(-)$1	1	20	56	15.3243
(((((.(((((.(.((.....)))))))))))))))	chr20:32264118-32264372(-)$1	1	31	67	14.4378
.((((.((..((((((.....))))))...)).).)	chr12:56991187-56991454(-)$1	1	33	69	13.0862
..((.(((((((.(((.....))).))).)))).))	chr19:38800325-38800597(-)$1	1	96	132	14.7915
((.(.((((((.(((......)))..))))))).))	chr19:11664159-11664391(-)$1	1	162	198	11.5039
(.....(((.((((((.....)))))).)))....)	chr1:27181260-27181538(+)$1	1	152	188	13.3363
(((...(((((..(((.....))).)))))...)))	chr16:89980030-89980326(+)$1	1	71	107	18.0971
.((((((.((((((((.....))))).))).)).))	chr20:1165102-1165374(-)$1	1	147	183	12.1920
.(((((((((((.(((.....))))).)))))))))	chr6:161557183-161557431(-)$1	1	180	216	15.0971
(.(((((((((.(((......))).).))))).)))	chr12:58216961-58217254(-)$1	1	217	253	13.2572
))))).))))((((((.....))).)))((((.(((	chr16:29679665-29679895(+)$1	1	140	176	13.2575
..(((((((((..(((((......)))))....)))	chr17:76794267-76794523(-)$1	1	202	238	10.0788
((..(((((((.((((.....)))))))).)))...	chr16:67471959-67472204(-)$1	1	203	239	14.2129
((((..((((((((((.....))).)))))))...)	chr19:18554149-18554420(-)$1	1	27	63	15.9942
(((((..(((((.(((.....))).).))))..)))	chr1:38462360-38462606(-)$1	1	29	65	15.9920
(....((((.(((..(((...)))...))).)))))	chr19:47774827-47775044(+)$1	1	11	47	11.6016
..(((((((((..(((.....)))...)))))))))	chr3:14526549-14526884(+)$1	1	225	261	15.2713
((.((((.(((...((.....))...)))..)))).	chr7:1887586-1887817(-)$1	1	18	54	14.2276
.(((.(((..((((((.....)))))).))).)).)	chr7:102739988-102740241(+)$1	1	94	130	12.8765
.((...((((..((((......))))..)))).)))	chr21:36260455-36260740(-)$1	1	203	239	11.2184
(.....(((..(((((.....)))))..)))...))	chr14:55257272-55257551(+)$1	1	67	103	14.1643
.(..(((((.....((.....))....))).))..)	chr10:22825745-22825984(-)$1	1	45	81	13.2518
(((((((((((..(((....)))..)))....))).	chr11:64073725-64073999(+)$1	1	83	119	11.1913
((((.(((...(((((.....).)))).))).))))	chr17:37076011-37076383(+)$1	1	9	45	13.3387
((....(((((.((((.....)))).).))))..))	chr6:43148843-43149102(+)$1	1	143	179	14.5115
(((((((((((.((((......)))).)))))))))	chr16:89980226-89980522(+)$1	1	194	230	13.1634
((((..((((((((((.....))).)))))))...)	chr19:18554253-18554494(-)$1	1	101	137	15.9942
(((...(((((...(((...)))...)))))..)))	chr10:22825590-22825851(-)$1	1	206	242	13.4492
(((((((((((..((......)).))))).))).))	chr17:75495767-75496031(+)$1	1	148	184	12.1453
(((((((((.(((.((.....))..))).)))))))	chr1:36180650-36180960(-)$1	1	21	57	15.2964
)(((.(.((.(.((((.....)))).).)).).)))	chr20:1165207-1165450(-)$1	1	132	168	14.7068
((((.((((((.((((.....)))).))...)))).	chr4:78740437-78740689(-)$1	1	56	92	13.5236
)(((((((((...(((.....)))...)))))..))	chr22:50618323-50618634(+)$1	1	187	223	15.2464
(((....(((..(((......))).)))..))))))	chr16:29679262-29679559(+)$1	1	163	199	14.0218
((((..((((...(((.....)))..)))).)).))	chr1:27181149-27181385(+)$1	1	123	159	15.3251
((((((.((((((.((.....)).)))))).))).)	chr16:31343238-31343518(+)$1	1	188	224	12.3870
(((.....((((((((.....))))).)))...)))	chr17:38175388-38175677(-)$1	1	35	71	14.3866
.(((.(((((.(.(((.....))).).))))).)))	chr5:126250401-126250658(-)$1	1	185	221	16.6555
((...((.(.(((((......)))))).))...)))	chr17:7477045-7477342(+)$1	1	45	81	11.8368
((((..(((((..(((...)))..))))).))))..	chr1:42643247-42643507(-)$1	1	167	203	11.0376
((.((((((.(.((((.....)))).).)))))).)	chr10:103874483-103874760(-)$1	1	159	195	13.6367
((((...((((.((.(.....).)))))))))).).	chr4:2068491-2068739(+)$1	1	145	181	12.8977

#PSSM
c : 0.19	f : 0.11	g : 0.11	e : 0.11	[ : 0.11	d : 0.11	b : 0.05	h : 0.03	= : 0.03	! : 0.01	" : 0.01	: : 0.01	i : 0.01	# : 0.01	
c : 0.23	g : 0.11	e : 0.11	d : 0.11	f : 0.07	[ : 0.03	b : 0.03	$ : 0.03	i : 0.03	h : 0.03	a : 0.03	= : 0.03	! : 0.01	" : 0.01	# : 0.01	: : 0.01	
c : 0.21	g : 0.11	e : 0.09	d : 0.09	[ : 0.07	b : 0.07	f : 0.05	i : 0.05	$ : 0.03	! : 0.03	h : 0.03	# : 0.03	= : 0.03	" : 0.01	
" : 0.11	c : 0.11	e : 0.09	d : 0.09	# : 0.07	f : 0.07	g : 0.07	b : 0.07	$ : 0.05	i : 0.05	a : 0.03	! : 0.03	h : 0.03	= : 0.03	
[ : 0.15	" : 0.13	# : 0.07	f : 0.07	e : 0.07	c : 0.07	! : 0.07	g : 0.05	$ : 0.05	d : 0.05	i : 0.05	b : 0.03	= : 0.03	a : 0.01	
" : 0.13	c : 0.13	e : 0.09	! : 0.09	d : 0.07	# : 0.05	= : 0.05	f : 0.05	$ : 0.05	b : 0.05	i : 0.05	a : 0.03	[ : 0.03	g : 0.01	] : 0.01	
e : 0.21	c : 0.15	d : 0.15	b : 0.07	[ : 0.07	g : 0.05	= : 0.05	i : 0.05	# : 0.03	" : 0.03	f : 0.03	! : 0.01	$ : 0.01	
e : 0.21	d : 0.21	c : 0.15	b : 0.05	= : 0.05	f : 0.05	[ : 0.05	i : 0.05	a : 0.03	$ : 0.03	g : 0.03	" : 0.01	
e : 0.21	d : 0.21	c : 0.17	= : 0.05	f : 0.05	i : 0.05	[ : 0.03	b : 0.03	a : 0.03	! : 0.03	g : 0.03	$ : 0.01	" : 0.01	
e : 0.21	d : 0.15	[ : 0.13	c : 0.13	b : 0.05	! : 0.05	i : 0.05	$ : 0.03	= : 0.03	f : 0.03	g : 0.03	a : 0.01	" : 0.01	
c : 0.17	e : 0.15	f : 0.09	b : 0.07	! : 0.07	d : 0.07	a : 0.07	[ : 0.05	" : 0.05	$ : 0.03	= : 0.03	i : 0.03	g : 0.03	
! : 0.23	[ : 0.21	e : 0.09	a : 0.07	f : 0.07	c : 0.07	" : 0.07	$ : 0.03	b : 0.03	g : 0.03	= : 0.01	d : 0.01	
! : 0.19	d : 0.17	c : 0.15	[ : 0.13	f : 0.07	e : 0.07	" : 0.07	g : 0.03	= : 0.01	a : 0.01	$ : 0.01	b : 0.01	
c : 0.42	d : 0.17	e : 0.09	b : 0.05	[ : 0.05	f : 0.05	! : 0.03	" : 0.03	a : 0.01	= : 0.01	$ : 0.01	
c : 0.44	d : 0.17	b : 0.15	e : 0.09	f : 0.05	[ : 0.03	= : 0.01	! : 0.01	
c : 0.36	d : 0.15	o : 0.13	b : 0.11	a : 0.07	e : 0.07	f : 0.05	n : 0.01	
n : 0.71	o : 0.17	m : 0.03	c : 0.03	e : 0.01	l : 0.01	
n : 0.71	o : 0.17	m : 0.03	l : 0.03	e : 0.01	c : 0.01	
n : 0.71	o : 0.19	l : 0.05	m : 0.03	
n : 0.71	o : 0.19	m : 0.03	l : 0.03	c : 0.01	
n : 0.69	o : 0.19	c : 0.07	b : 0.01	l : 0.01	
c : 0.46	b : 0.15	d : 0.11	a : 0.07	e : 0.07	f : 0.05	o : 0.05	
c : 0.44	d : 0.15	b : 0.13	] : 0.09	e : 0.07	f : 0.05	o : 0.01	2 : 0.01	
c : 0.38	d : 0.17	2 : 0.09	e : 0.07	f : 0.05	b : 0.03	a : 0.03	3 : 0.03	] : 0.03	= : 0.01	o : 0.01	4 : 0.01	
] : 0.24	d : 0.17	e : 0.15	2 : 0.13	3 : 0.11	f : 0.07	b : 0.05	= : 0.01	4 : 0.01	
e : 0.21	c : 0.11	d : 0.11	3 : 0.11	] : 0.09	2 : 0.07	a : 0.07	f : 0.07	b : 0.03	g : 0.03	= : 0.01	4 : 0.01	
e : 0.15	] : 0.15	c : 0.13	a : 0.09	d : 0.09	f : 0.09	3 : 0.07	2 : 0.05	g : 0.05	b : 0.03	= : 0.01	4 : 0.01	
e : 0.21	c : 0.21	] : 0.15	d : 0.09	a : 0.05	g : 0.05	b : 0.03	= : 0.03	f : 0.03	i : 0.03	2 : 0.03	3 : 0.01	
e : 0.21	c : 0.17	d : 0.15	b : 0.07	] : 0.07	3 : 0.05	g : 0.05	f : 0.05	4 : 0.03	= : 0.03	i : 0.03	2 : 0.01	
e : 0.15	c : 0.15	d : 0.13	3 : 0.07	g : 0.07	] : 0.07	b : 0.05	4 : 0.05	= : 0.05	f : 0.05	i : 0.03	2 : 0.03	a : 0.01	
3 : 0.15	] : 0.13	d : 0.13	e : 0.11	c : 0.11	g : 0.09	4 : 0.05	= : 0.05	f : 0.05	i : 0.03	b : 0.01	2 : 0.01	
d : 0.17	3 : 0.13	g : 0.09	e : 0.09	c : 0.07	4 : 0.07	b : 0.07	= : 0.05	f : 0.05	a : 0.03	i : 0.03	2 : 0.03	] : 0.03	
3 : 0.15	c : 0.11	] : 0.11	d : 0.11	b : 0.07	2 : 0.07	f : 0.05	g : 0.05	= : 0.05	e : 0.05	4 : 0.03	i : 0.03	a : 0.01	[ : 0.01	
c : 0.23	] : 0.13	f : 0.07	g : 0.07	3 : 0.07	d : 0.07	e : 0.05	i : 0.05	2 : 0.05	a : 0.03	b : 0.03	= : 0.03	: : 0.01	4 : 0.01	
c : 0.24	] : 0.11	d : 0.11	f : 0.07	g : 0.07	3 : 0.07	b : 0.05	i : 0.05	e : 0.03	= : 0.03	> : 0.01	: : 0.01	4 : 0.01	2 : 0.01	a : 0.01	
c : 0.24	d : 0.11	f : 0.09	] : 0.09	g : 0.07	b : 0.05	i : 0.05	3 : 0.05	e : 0.03	h : 0.03	a : 0.03	= : 0.03	> : 0.01	: : 0.01	

#score	713.8810594987519
#seq	52
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_transcript_m3_run1.txt

#BEAR
eeeee[cccwwwwwwwwwwwwwwccce	chr3:49397518-49397755(-)$1	237	180	207	21.8979
FFFFeeeeevvvvvvvvvvvvveeeee	chr21:33039471-33039729(+)$1	258	17	44	22.3886
ddd[a[ccctttttttttttcccaddd	chr17:79478438-79478657(-)$1	219	57	84	24.0195
ggg"""cccyyyyyyyyyyyyyyyycc	chr6:27114496-27114717(-)$1	221	17	44	20.2078
++++cccvvvvvvvvvvvvvccceeee	chr12:56553807-56554034(+)$1	227	195	222	20.9613
eee"""bbwwwwwwwwwwwwwwbb333	chr11:763241-763471(+)$1	230	71	98	21.9152
dddd[ddddvvvvvvvvvvvvvddddd	chrX:154012201-154012419(-)$1	218	170	197	23.6070
cc[eeeeevvvvvvvvvvvvveeeee]	chr13:47358286-47358507(-)$1	221	134	161	24.3324
ddafffffftttttttttttffffff2	chr19:39330852-39331102(-)$1	250	191	218	23.1845
eeeeeddddtttttttttttdddd22e	chr10:73578328-73578576(-)$1	248	112	139	23.4562
[ccc[ddddtttttttttttddddccc	chr12:125396157-125396414(-)$1	257	180	207	24.0103
!!gggggggtttttttttttggggggg	chr15:45007678-45008001(+)$1	323	261	288	24.1082
dddfffffftttttttttttffffff:	chr2:10930747-10930998(-)$1	251	151	178	22.2704
ddddeeeeettttttttttteeeee]d	chr6:26056287-26056506(-)$1	219	156	183	23.7417
###ffffffuuuuuuuuuuuuffffff	chr5:177020552-177020770(+)$1	218	137	164	23.1353
[ffffffvvvvvvvvvvvvvffffff]	chr1:145441082-145441303(+)$1	221	107	134	22.4401
"""eeeeevvvvvvvvvvvvveeeee]	chr20:50770032-50770257(-)$1	225	109	136	24.4271
cc!!eeeeevvvvvvvvvvvvveeeee	chr3:136002607-136002889(+)$1	282	130	157	24.6973
[hhhhhhhhttttttttttthhhhhhh	chr13:29236512-29236745(+)$1	233	117	144	20.8394
ggggggcccuuuuuuuuuuuuccc333	chrX:77373494-77373742(+)$1	248	14	41	24.5092
ccc!!ddddvvvvvvvvvvvvvdddd2	chr7:99695360-99695612(-)$1	252	171	198	24.2330
iii####bbvvvvvvvvvvvvvbb444	chr6:31704109-31704375(-)$1	266	11	38	23.7304
=========ttttttttttt=======	chr17:16285245-16285495(+)$1	250	139	166	24.8271
####eeeeettttttttttteeeee77	chr7:56171867-56172111(-)$1	244	170	197	23.6765
ii!!eeeeeuuuuuuuuuuuueeeee]	chr8:11687651-11687881(+)$1	230	78	105	24.5186
iiiiiiiiitttttttttttiiiiiii	chr2:69564929-69565227(-)$1	298	93	120	24.1273
ccc!!ddddtttttttttttdddd]cc	chr9:35062152-35062399(-)$1	247	148	175	24.3552
c[dddd[bbvvvvvvvvvvvvvbb]dd	chr7:5567266-5567483(-)$1	217	82	109	22.7318
cc!!eeeeettttttttttteeeee]c	chr9:32572854-32573090(-)$1	236	91	118	24.6252
eeee[dddduuuuuuuuuuuuddddee	chr11:61081752-61082029(-)$1	277	242	269	23.5213
FF:fffffftttttttttttffffffE	chr19:38799386-38799590(-)$1	204	173	200	20.4580
dddd[ddddtttttttttttdddd]dd	chr17:57760499-57760723(+)$1	224	173	200	23.6547
e::ffffffuuuuuuuuuuuuffffff	chr2:203157674-203157922(+)$1	248	28	55	21.1588
[bb[eeeeewwwwwwwwwwwwwweeee	chr22:21965154-21965430(+)$1	276	125	152	21.9280
cc!!eeeeettttttttttteeeee22	chr1:156104559-156104808(+)$1	249	14	41	24.4460
=========ttttttttttt=======	chr17:16285572-16285793(+)$1	221	40	67	24.8271
iiiiiiiiiwwwwwwwwwwwwwwiiii	chr6:31797549-31797836(+)$1	287	128	155	22.1547
gggggggvvvvvvvvvvvvvggggggg	chr1:160268839-160269086(-)$1	247	59	86	23.0802
fffeeeeeuuuuuuuuuuuueeeee33	chr5:133496652-133496922(-)$1	270	200	227	23.1227
eeeeedddduuuuuuuuuuuudddd>>	chr16:29706105-29706373(+)$1	268	27	54	23.1659
dddd[ddddtttttttttttdddd]dd	chr1:20987654-20987899(-)$1	245	197	224	23.6547
g[bb!!ccctttttttttttccc22bb	chr1:154947055-154947310(+)$1	255	184	211	23.2447
bb"""ddddtttttttttttdddd333	chr22:42046695-42046991(+)$1	296	193	220	24.3800
=========ttttttttttt=======	chr17:16285215-16285445(+)$1	230	169	196	24.8271
iiiii!!bbuuuuuuuuuuuubb22ii	chr7:97485900-97486137(-)$1	237	172	199	22.8375
ff"""cccvvvvvvvvvvvvvccc]ff	chr22:22893144-22893399(-)$1	255	48	75	24.3243
cc!!eeeeevvvvvvvvvvvvveeeee	chr6:75950822-75951082(-)$1	260	102	129	24.6973
eeeee!!bbtttttttttttbbeeeee	chr10:51584695-51584948(+)$1	253	86	113	23.2908
ddddcccvvvvvvvvvvvvvccc]ddd	chr1:182355344-182355602(-)$1	258	81	108	22.5068
bbffffffvvvvvvvvvvvvvffffff	chr16:2028590-2028799(+)$1	209	20	47	22.5814
##gggggggtttttttttttggggggg	chr19:46190655-46190908(-)$1	253	159	186	23.9465
!!bb[ddddvvvvvvvvvvvvvddddb	chr12:57066697-57066950(-)$1	253	42	69	23.4711
%%%%cccvvvvvvvvvvvvvcccccce	chr1:120284376-120284612(+)$1	236	140	167	20.9871
cc[fffffftttttttttttffffff]	chr22:29695644-29695930(+)$1	286	88	115	23.6033
eee"""cccwwwwwwwwwwwwwwccc6	chr6:26217248-26217483(+)$1	235	162	189	21.9739
e$$$$$ccctttttttttttccc4444	chrX:77372745-77372980(+)$1	235	28	55	23.9932
dd"""ddddtttttttttttdddd555	chr1:153617466-153617771(+)$1	305	253	280	22.3117
eeeee!!bbtttttttttttbb]eeee	chr3:40351279-40351532(+)$1	253	196	223	23.1644
dd####cccvvvvvvvvvvvvvccc77	chr17:76170906-76171128(-)$1	222	42	69	23.6465

#otherMatches

#Seq PSSM
GAUUACUGGCCUUUUUCAUUUAUCUAU	chr3:49397518-49397755(-)$1	237	180	207	21.8979
GUCAAGUUUUAAUUUAGCUCAUGAACU	chr21:33039471-33039729(+)$1	258	17	44	22.3886
UGCUGUCCCUCUACGCCUCUGGGCGCA	chr17:79478438-79478657(-)$1	219	57	84	24.0195
CUUUCACUCUUCACCUUAUUUGCAUGA	chr6:27114496-27114717(-)$1	221	17	44	20.2078
AAAAUGCUUUCUUUCCCCCUGCAGGUG	chr12:56553807-56554034(+)$1	227	195	222	20.9613
ugccccgcccucaccuguccccgcccc	chr11:763241-763471(+)$1	230	71	98	21.9152
UCACGUGCCCACCCCCAAAAAAGGCAG	chrX:154012201-154012419(-)$1	218	170	197	23.6070
GUCUAGAUAUCCUUUGUAAAAAUCUAA	chr13:47358286-47358507(-)$1	221	134	161	24.3324
GUCGGGGCCCAAGUCGCUACGGCCCCC	chr19:39330852-39331102(-)$1	250	191	218	23.1845
CUCGGCCCAUAAGCCCUUGUUGGGAAC	chr10:73578328-73578576(-)$1	248	112	139	23.4562
AUUUCAUUGCACUUUCCUUUCAAUAAA	chr12:125396157-125396414(-)$1	257	180	207	24.0103
AUGAGUAGUCAUAUCAUAAAGCUGCUU	chr15:45007678-45008001(+)$1	323	261	288	24.1082
GGGGUGAGUAUACUUAUAAGGCUCAUU	chr2:10930747-10930998(-)$1	251	151	178	22.2704
GGCUCCUUUAAACUCAACAAGAAGGCA	chr6:26056287-26056506(-)$1	219	156	183	23.7417
ACUUUCACUUCCCAUACCCCUGGUGAG	chr5:177020552-177020770(+)$1	218	137	164	23.1353
CCUGCAUCCUCAACAACAAUGUGCAGU	chr1:145441082-145441303(+)$1	221	107	134	22.4401
UUCCGGGGAAAGAUAAAGACGCCCUGC	chr20:50770032-50770257(-)$1	225	109	136	24.4271
UGGUGGGGCCGUCUACUCCCCAGCCCU	chr3:136002607-136002889(+)$1	282	130	157	24.6973
UCUUCUUCGGAAAGGGUAUAUGGGGGA	chr13:29236512-29236745(+)$1	233	117	144	20.8394
GGGAUUGACUAGAAUCUGAAUGUCUUU	chrX:77373494-77373742(+)$1	248	14	41	24.5092
GAGAGAGGAAAUUCCGUUUACAUCCUA	chr7:99695360-99695612(-)$1	252	171	198	24.2330
CCCCCCUCCAGUCCCCUCCCCAGGUUC	chr6:31704109-31704375(-)$1	266	11	38	23.7304
CUCUUUCUGACUACAACAUCCAGAAGG	chr17:16285245-16285495(+)$1	250	139	166	24.8271
CGAGGCCUGACAUCACUUACCAGGUGG	chr7:56171867-56172111(-)$1	244	170	197	23.6765
CCUUAAUCUUCUUAUCUGUCUAGGUUU	chr8:11687651-11687881(+)$1	230	78	105	24.5186
UUAACUGUGGGGAUCACAAACACAGUU	chr2:69564929-69565227(-)$1	298	93	120	24.1273
UUGAUGAGCUAGAUGCCAUCGCUCCCA	chr9:35062152-35062399(-)$1	247	148	175	24.3552
UCGUCCACCGCAAAUGCUUCUAGGCGG	chr7:5567266-5567483(-)$1	217	82	109	22.7318
GCGAUGGCUGAAGGACCAGGAGCUGAG	chr9:32572854-32573090(-)$1	236	91	118	24.6252
CAGAUCAGGUGUGUGUGUUUUUCUGUC	chr11:61081752-61082029(-)$1	277	242	269	23.5213
GGGCAGGCCGAAUAAGGUGGGGUUUGG	chr19:38799386-38799590(-)$1	204	173	200	20.4580
GCUUCAAAAUAUCUUAUUCUUUUUAAG	chr17:57760499-57760723(+)$1	224	173	200	23.6547
CUACAGCUGUUAAAGAAAUUUUAGCUG	chr2:203157674-203157922(+)$1	248	28	55	21.1588
UCUGCCAGUAAUUAGUGCCGAAAACUG	chr22:21965154-21965430(+)$1	276	125	152	21.9280
GUCCUUCCUCCAACCCUUCCAGGAGCU	chr1:156104559-156104808(+)$1	249	14	41	24.4460
CUCUUUCUGACUACAACAUCCAGAAGG	chr17:16285572-16285793(+)$1	221	40	67	24.8271
GUCUUUGAGGUGGACUGUUGGGACUCA	chr6:31797549-31797836(+)$1	287	128	155	22.1547
UUUACCCAUCUAUGUCACACGGGUGAA	chr1:160268839-160269086(-)$1	247	59	86	23.0802
GAAUUCCUGAAAGUUGACCAAGGAACA	chr5:133496652-133496922(-)$1	270	200	227	23.1227
GGCAGGGCAGCCUUUCUUCGAUGCCAU	chr16:29706105-29706373(+)$1	268	27	54	23.1659
CGGAGCCUGAAGGGUGAGAGCGGGGUC	chr1:20987654-20987899(-)$1	245	197	224	23.6547
UACUAUUCGGACAAAUACGACGACGAG	chr1:154947055-154947310(+)$1	255	184	211	23.2447
GUGAUUGGUAAGUAGCGUGGACCAUGG	chr22:42046695-42046991(+)$1	296	193	220	24.3800
CUCUUUCUGACUACAACAUCCAGAAGG	chr17:16285215-16285445(+)$1	230	169	196	24.8271
UUUAAUACUGAAAAAAAUGUAAGGUUU	chr7:97485900-97486137(-)$1	237	172	199	22.8375
UUGACGGGAGACACAGCCAGACCCUGA	chr22:22893144-22893399(-)$1	255	48	75	24.3243
CUCUUCGUCAGAUUGGGCAGAGGACGA	chr6:75950822-75951082(-)$1	260	102	129	24.6973
CUGAUCAAGAUGAGAUGGACCUAUCAG	chr10:51584695-51584948(+)$1	253	86	113	23.2908
CACCUGUAAACGGAUAAUGGACAUGGU	chr1:182355344-182355602(-)$1	258	81	108	22.5068
GUGGCACAACAUGAAGCUCCCUGUGCC	chr16:2028590-2028799(+)$1	209	20	47	22.5814
UUGAGAAUAAUAAAGCUCUGUGUUUUU	chr19:46190655-46190908(-)$1	253	159	186	23.9465
UAUGUGAAUGUUUAGUUAAUGAAUUCC	chr12:57066697-57066950(-)$1	253	42	69	23.4711
CAAUGUGCGCCCCUCUCCCCCACGCUG	chr1:120284376-120284612(+)$1	236	140	167	20.9871
GUGGCUUUGGUGGAGGAAGACGAGGUG	chr22:29695644-29695930(+)$1	286	88	115	23.6033
CGGCUCGCGACAAUAAGAAGACCCGCA	chr6:26217248-26217483(+)$1	235	162	189	21.9739
GCCAUCACAUUUUCUGUUUUUGUUUUU	chrX:77372745-77372980(+)$1	235	28	55	23.9932
AGACAGAUCCCGAAACCAAUGAUUGAA	chr1:153617466-153617771(+)$1	305	253	280	22.3117
CGCCGCCGCCUCCCUCCCUUGCCCGGC	chr3:40351279-40351532(+)$1	253	196	223	23.1644
GGCUCUGCCUCCUUCCUGUCCUGGCCC	chr17:76170906-76171128(-)$1	222	42	69	23.6465

#DB
(((((.(((..............))))	chr3:49397518-49397755(-)$1	1	180	207	21.8979
(((((((((.............)))))	chr21:33039471-33039729(+)$1	1	17	44	22.3886
(((.(.(((...........)))))))	chr17:79478438-79478657(-)$1	1	57	84	24.0195
(((...(((................))	chr6:27114496-27114717(-)$1	1	17	44	20.2078
....(((.............)))))))	chr12:56553807-56554034(+)$1	1	195	222	20.9613
(((...((..............))...	chr11:763241-763471(+)$1	1	71	98	21.9152
((((.((((.............)))))	chrX:154012201-154012419(-)$1	1	170	197	23.6070
((.(((((.............))))).	chr13:47358286-47358507(-)$1	1	134	161	24.3324
(((((((((...........)))))).	chr19:39330852-39331102(-)$1	1	191	218	23.1845
(((((((((...........))))..)	chr10:73578328-73578576(-)$1	1	112	139	23.4562
.(((.((((...........)))))))	chr12:125396157-125396414(-)$1	1	180	207	24.0103
..(((((((...........)))))))	chr15:45007678-45008001(+)$1	1	261	288	24.1082
)))((((((...........)))))).	chr2:10930747-10930998(-)$1	1	151	178	22.2704
(((((((((...........))))).)	chr6:26056287-26056506(-)$1	1	156	183	23.7417
...((((((............))))))	chr5:177020552-177020770(+)$1	1	137	164	23.1353
.((((((.............)))))).	chr1:145441082-145441303(+)$1	1	107	134	22.4401
...(((((.............))))).	chr20:50770032-50770257(-)$1	1	109	136	24.4271
((..(((((.............)))))	chr3:136002607-136002889(+)$1	1	130	157	24.6973
.((((((((...........)))))))	chr13:29236512-29236745(+)$1	1	117	144	20.8394
(((((((((............)))...	chrX:77373494-77373742(+)$1	1	14	41	24.5092
(((..((((.............)))).	chr7:99695360-99695612(-)$1	1	171	198	24.2330
(((....((.............))...	chr6:31704109-31704375(-)$1	1	11	38	23.7304
(((((((((...........)))))))	chr17:16285245-16285495(+)$1	1	139	166	24.8271
....(((((...........)))))..	chr7:56171867-56172111(-)$1	1	170	197	23.6765
((..(((((............))))).	chr8:11687651-11687881(+)$1	1	78	105	24.5186
(((((((((...........)))))))	chr2:69564929-69565227(-)$1	1	93	120	24.1273
(((..((((...........)))).))	chr9:35062152-35062399(-)$1	1	148	175	24.3552
(.((((.((.............)).))	chr7:5567266-5567483(-)$1	1	82	109	22.7318
((..(((((...........))))).)	chr9:32572854-32573090(-)$1	1	91	118	24.6252
((((.((((............))))))	chr11:61081752-61082029(-)$1	1	242	269	23.5213
)).((((((...........)))))))	chr19:38799386-38799590(-)$1	1	173	200	20.4580
((((.((((...........)))).))	chr17:57760499-57760723(+)$1	1	173	200	23.6547
)..((((((............))))))	chr2:203157674-203157922(+)$1	1	28	55	21.1588
.((.(((((..............))))	chr22:21965154-21965430(+)$1	1	125	152	21.9280
((..(((((...........)))))..	chr1:156104559-156104808(+)$1	1	14	41	24.4460
(((((((((...........)))))))	chr17:16285572-16285793(+)$1	1	40	67	24.8271
(((((((((..............))))	chr6:31797549-31797836(+)$1	1	128	155	22.1547
(((((((.............)))))))	chr1:160268839-160269086(-)$1	1	59	86	23.0802
((((((((............)))))..	chr5:133496652-133496922(-)$1	1	200	227	23.1227
(((((((((............))))..	chr16:29706105-29706373(+)$1	1	27	54	23.1659
((((.((((...........)))).))	chr1:20987654-20987899(-)$1	1	197	224	23.6547
(.((..(((...........)))..))	chr1:154947055-154947310(+)$1	1	184	211	23.2447
((...((((...........))))...	chr22:42046695-42046991(+)$1	1	193	220	24.3800
(((((((((...........)))))))	chr17:16285215-16285445(+)$1	1	169	196	24.8271
(((((..((............))..))	chr7:97485900-97486137(-)$1	1	172	199	22.8375
((...(((.............))).))	chr22:22893144-22893399(-)$1	1	48	75	24.3243
((..(((((.............)))))	chr6:75950822-75951082(-)$1	1	102	129	24.6973
(((((..((...........)))))))	chr10:51584695-51584948(+)$1	1	86	113	23.2908
(((((((.............))).)))	chr1:182355344-182355602(-)$1	1	81	108	22.5068
))((((((.............))))))	chr16:2028590-2028799(+)$1	1	20	47	22.5814
..(((((((...........)))))))	chr19:46190655-46190908(-)$1	1	159	186	23.9465
..((.((((.............)))))	chr12:57066697-57066950(-)$1	1	42	69	23.4711
....(((.............)))))))	chr1:120284376-120284612(+)$1	1	140	167	20.9871
((.((((((...........)))))).	chr22:29695644-29695930(+)$1	1	88	115	23.6033
(((...(((..............))).	chr6:26217248-26217483(+)$1	1	162	189	21.9739
(.....(((...........)))....	chrX:77372745-77372980(+)$1	1	28	55	23.9932
((...((((...........))))...	chr1:153617466-153617771(+)$1	1	253	280	22.3117
(((((..((...........)).))))	chr3:40351279-40351532(+)$1	1	196	223	23.1644
((....(((.............)))..	chr17:76170906-76171128(-)$1	1	42	69	23.6465

#PSSM
e : 0.16	d : 0.16	c : 0.15	i : 0.08	g : 0.06	[ : 0.06	# : 0.05	= : 0.05	F : 0.03	! : 0.03	f : 0.03	b : 0.03	+ : 0.01	" : 0.01	% : 0.01	
d : 0.16	c : 0.15	e : 0.13	i : 0.08	g : 0.05	# : 0.05	f : 0.05	= : 0.05	b : 0.05	F : 0.03	! : 0.03	[ : 0.03	+ : 0.01	" : 0.01	h : 0.01	: : 0.01	% : 0.01	$ : 0.01	
e : 0.13	d : 0.13	g : 0.08	! : 0.08	" : 0.06	i : 0.06	c : 0.05	# : 0.05	f : 0.05	= : 0.05	b : 0.05	[ : 0.03	: : 0.03	F : 0.01	+ : 0.01	a : 0.01	h : 0.01	% : 0.01	$ : 0.01	
e : 0.15	f : 0.13	! : 0.11	" : 0.10	d : 0.10	g : 0.06	# : 0.05	= : 0.05	i : 0.05	[ : 0.03	b : 0.03	F : 0.01	+ : 0.01	c : 0.01	h : 0.01	% : 0.01	$ : 0.01	
e : 0.28	f : 0.13	" : 0.10	[ : 0.10	g : 0.06	c : 0.05	! : 0.05	= : 0.05	i : 0.05	# : 0.03	a : 0.01	h : 0.01	d : 0.01	$ : 0.01	
d : 0.22	e : 0.20	f : 0.13	c : 0.06	g : 0.06	! : 0.06	" : 0.05	= : 0.05	[ : 0.03	# : 0.03	i : 0.03	h : 0.01	$ : 0.01	
c : 0.20	e : 0.20	d : 0.20	f : 0.13	g : 0.05	= : 0.05	! : 0.05	i : 0.03	b : 0.01	h : 0.01	# : 0.01	[ : 0.01	
e : 0.20	d : 0.20	c : 0.15	f : 0.11	b : 0.10	v : 0.08	= : 0.05	g : 0.03	i : 0.03	h : 0.01	
d : 0.20	e : 0.15	v : 0.15	c : 0.13	f : 0.10	b : 0.08	= : 0.05	g : 0.03	i : 0.03	w : 0.01	h : 0.01	u : 0.01	
t : 0.45	v : 0.30	u : 0.13	w : 0.08	y : 0.01	
t : 0.45	v : 0.30	u : 0.13	w : 0.08	y : 0.01	
t : 0.45	v : 0.30	u : 0.13	w : 0.08	y : 0.01	
t : 0.45	v : 0.30	u : 0.13	w : 0.08	y : 0.01	
t : 0.45	v : 0.30	u : 0.13	w : 0.08	y : 0.01	
t : 0.45	v : 0.30	u : 0.13	w : 0.08	y : 0.01	
t : 0.45	v : 0.30	u : 0.13	w : 0.08	y : 0.01	
t : 0.45	v : 0.30	u : 0.13	w : 0.08	y : 0.01	
t : 0.45	v : 0.30	u : 0.13	w : 0.08	y : 0.01	
t : 0.45	v : 0.30	u : 0.13	w : 0.08	y : 0.01	
t : 0.45	v : 0.30	u : 0.13	w : 0.08	y : 0.01	
v : 0.22	d : 0.11	u : 0.11	c : 0.10	w : 0.08	f : 0.08	e : 0.08	g : 0.05	= : 0.05	b : 0.03	y : 0.01	h : 0.01	i : 0.01	
v : 0.15	d : 0.15	c : 0.13	e : 0.13	f : 0.13	w : 0.08	g : 0.05	= : 0.05	b : 0.05	y : 0.01	h : 0.01	i : 0.01	
e : 0.20	d : 0.20	c : 0.15	f : 0.13	w : 0.06	b : 0.06	g : 0.05	= : 0.05	y : 0.01	h : 0.01	i : 0.01	] : 0.01	
e : 0.25	d : 0.20	f : 0.13	c : 0.10	b : 0.05	g : 0.05	= : 0.05	i : 0.03	2 : 0.03	a : 0.01	y : 0.01	h : 0.01	] : 0.01	4 : 0.01	
e : 0.25	f : 0.13	d : 0.11	c : 0.08	] : 0.08	3 : 0.05	2 : 0.05	g : 0.05	= : 0.05	4 : 0.03	i : 0.03	y : 0.01	h : 0.01	5 : 0.01	
e : 0.18	f : 0.15	d : 0.13	c : 0.10	3 : 0.06	g : 0.05	= : 0.05	i : 0.05	2 : 0.03	] : 0.03	4 : 0.03	7 : 0.03	h : 0.01	> : 0.01	b : 0.01	5 : 0.01	
e : 0.18	d : 0.11	] : 0.08	c : 0.06	3 : 0.06	f : 0.06	2 : 0.05	g : 0.05	= : 0.05	i : 0.05	4 : 0.03	7 : 0.03	b : 0.03	: : 0.01	h : 0.01	E : 0.01	> : 0.01	6 : 0.01	5 : 0.01	

#score	1371.9369462316092
#seq	59
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_UTR_m1_run1.txt

#BEAR
d[ffffff####bb[ddddnnnnndddd]bb333ffffff	chr13:113536990-113537292(+)$1	302	126	166	13.3671
!dddd[bb[a####eeeeennnnneeeee22a]bbdddd]	chr17:53345122-53345448(+)$1	326	134	174	13.2332
#ffffffdddd[ccc!!bboooooobb4444ccc]dddd5	chr22:38061593-38061873(+)$1	280	67	107	12.1793
==========!!eeeeecccmmmmccc]eeeee333====	chr4:6718444-6718706(+)$1	262	119	159	12.9962
""iiiiiiiiiccc"""bbnnnnnbb4444ccc]iiiiii	chr17:18167522-18167799(+)$1	277	60	100	18.5770
####ccc[ffffff[ddddnnnnnddddffffff22ccc3	chr6:32940421-32940665(+)$1	244	89	129	13.9098
cc"""ccc[ccc"""ddddnnnnnddddccc]ccc22ccc	chr2:42557679-42557933(+)$1	254	177	217	15.5238
"""gggggggccc####bboooooobb22ccc]ggggggg	chr2:44065679-44065933(-)$1	254	36	76	15.3564
DDD==========####bbnnnnnbb22==========cc	chr17:79479259-79479486(-)$1	227	13	53	15.9034
GGiiiiiiiii"""eeeeennnnneeeee]iiiiiiiiiF	chr16:30544136-30544411(-)$1	275	214	254	14.4076
gg"""eeeee%%%%%%cccnnnnnccc4444eeeee22gg	chr2:128605333-128605614(-)$1	281	195	235	14.3441
ffff:ggggggg[a[cccooooooccc]a]ggggggg:FF	chr1:27237989-27238259(-)$1	270	225	265	11.9351
ffff:==========!!cccmmmmccc4444=========	chr7:150068798-150069022(+)$1	224	132	172	13.2756
ggggggg[a[eeeee[bboooooobb]eeeee22a]gggg	chr14:24682457-24682753(-)$1	296	114	154	12.6346
============[bb[cccnnnnncccbb===========	chr4:8228913-8229167(+)$1	254	202	242	17.2528
eeeeeeeeee"""bb[ccclllcccbb333eeeee]eeee	chr2:128622227-128622470(-)$1	243	112	152	12.6050
eeeee[bbeeeee"""cccnnnnnccc333eeeee]bb33	chr12:12870382-12870648(+)$1	266	149	189	17.3860
bb[bb[ccc!!bb!!cccooooooccc333bb4444ccc2	chr2:20647918-20648160(+)$1	242	184	224	14.2669
gggg"""dddd[a"""cccnnnnnccc333adddd22ggg	chr5:141693623-141693869(-)$1	246	11	51	18.0412
[==============[bboooooobb22============	chr6:36936292-36936643(-)$1	351	88	128	15.9027
####dddd####ccc!!ccclllccc22ccc333dddd33	chr17:56494267-56494521(-)$1	254	97	137	13.4830
cdddd[hhhhhhhha[cccnnnnnccc]a]hhhhhhhhdd	chr20:58513819-58514100(-)$1	281	187	227	13.4813
cc!!ffffffeeeee!!bbnnnnnbb22eeeee]ffffff	chr1:156354114-156354361(+)$1	247	38	78	15.1713
ffffffdddd[bb[a!!bbnnnnnbb22abb]dddd22ff	chr2:20647705-20647940(+)$1	235	148	188	14.1229
iiii"""bb####ccc[bbnnnnnbbcccbb333iiiiii	chr2:62934028-62934287(+)$1	259	155	195	16.0009
A:iiiiiiiii"""eeeeennnnneeeee]iiiiiiiiib	chr16:30544057-30544318(-)$1	261	121	161	13.9640
hh[dddd[ccc!!eeeeeannnnna]eeeeecccdddd22	chr9:130551999-130552240(+)$1	241	157	197	13.2154
cggggggg[bb"""eeeeennnnneeeee22bb]gggggg	chr7:92244234-92244492(-)$1	258	123	163	14.3893
ccc####cccdddd[cccooooooccc]dddd333ccc33	chr19:10802605-10802892(+)$1	287	99	139	13.5973
ccc[ccc[bb"""ccccccnnnnnccc]ccc333bbcccc	chr12:89745724-89745967(-)$1	243	157	197	16.6175
====="""ccc$$$$$cccnnnnncccccc]=========	chr2:86850116-86850361(-)$1	245	133	173	17.7124
ddd[ccceeeeea!!a[cccmmmmccc]a22a]eeeee33	chr19:56599213-56599469(-)$1	256	114	154	12.6745
eee:iiiiiiiii"""cccnnnnnccc333iiiiiiiii:	chr19:4652413-4652665(+)$1	252	50	90	17.3860
ccc[dddd"""gggggggannnnna]gggggggdddd]cc	chr11:116660586-116660851(-)$1	265	18	58	14.5264
c[a[bb"""ccc[a!!cccnnnnnccc]a]ccc]bb]a]c	chr6:26158683-26158921(+)$1	238	15	55	17.2940
!!a[ccc[ffffff"""bbnnnnnbb22ffffff]ccc]a	chr3:5025443-5025674(+)$1	231	37	77	16.3988
ddd[a[ffffff[a[bb[annnnna]bb]a]ffffff]a]	chr16:87367390-87367669(-)$1	279	158	198	13.6336
[eeeee[eeeee!!eeeeennnnneeeeeeeeeeeeeee]	chr14:31676599-31676816(-)$1	217	118	158	13.4228
a!!ccc!!bbeeeeecccooooooccc22eeeee22bb22	chr16:30566379-30566620(-)$1	241	39	79	12.9551
ddd!!bb[eeeee!!ddddnnnnndddd22eeeee]bb]d	chr17:74723064-74723315(+)$1	251	150	190	13.9411
ccc[dddd[bb[a!!a[bbnnnnnbb]a22abb]ddddcc	chr14:31676286-31676539(-)$1	253	16	56	15.5043
ooddddccc[dddd!!cccnnnnnccc22ddddcccccc"	chr9:116136536-116136821(-)$1	285	209	249	14.6747
a[ggggggg####ffffffnnnnnffffffggggggg]aF	chr19:11242527-11242761(+)$1	234	26	66	14.0958
ffffffdddd[bb[a!!bbnnnnnbb22abb]dddd22ff	chr2:20647761-20647989(+)$1	228	92	132	14.1229
####eeeee[ccc"""cccnnnnnccc4444ccc]eeeee	chrX:108976342-108976592(-)$1	250	143	183	17.7893
eeeeea!!eeeee"""cccnnnnnccc333eeeee22a22	chr19:11242069-11242334(+)$1	265	204	244	17.8312
eeeee[ffffffa"""ccclllccc333a]ffffff22ee	chr4:38691457-38691755(+)$1	298	80	120	12.7318
!a[eeeee!!cccccc[bbnnnnnbbccc22ccc22eeee	chr20:30753481-30753763(+)$1	282	153	193	15.0821
ddd[ccc[bb[ccc[cccooooooccc]ccc]bb]cccdd	chr17:70117186-70117448(+)$1	262	192	232	13.2617
cc!!ffffff"""ccc[bboooooobb]ccc22ffffff2	chr19:11242768-11243023(+)$1	255	204	244	12.8731
cccdddd!!eeeee"""bbnnnnnbb333eeeee22dddd	chr10:79800268-79800495(+)$1	227	164	204	16.1952
""ccc"""ffffff!!cccooooooccc22ffffff333c	chr2:208631468-208631731(-)$1	263	153	193	14.1377
f!!cccggggggg####bbnnnnnbb333ggggggg5555	chr6:30711119-30711350(-)$1	231	180	220	15.0748
++ffffffeeeee"""cccnnnnnccc333eeeee22fff	chr17:80559968-80560209(+)$1	241	73	113	16.2549
e[dddd$$$$$ccc[cccooooooccc]cccddddeeeee	chr2:218668804-218669065(-)$1	261	200	240	12.1024

#otherMatches

#Seq PSSM
GAGACAGAUACUUGGCUGUGAUGAGCAGACAUCCUCUGUC	chr13:113536990-113537292(+)$1	302	126	166	13.3671
CCUGGAGGAGUUUUUGUCAGAAAAUGGCAUUCCCCCCAGC	chr17:53345122-53345448(+)$1	326	134	174	13.2332
ACUUCAGCAUCGACCCCGCACGCACGCUUAUGGUGGGUGA	chr22:38061593-38061873(+)$1	280	67	107	12.1793
UGUUGCAGUGAAAGGCCUCAGCUCUGACGGCCUGACCACU	chr4:6718444-6718706(+)$1	262	119	159	12.9962
CGAGGUGCAGCACGAACGCCUGGAGCUCACUGUGGCUGUG	chr17:18167522-18167799(+)$1	277	60	100	18.5770
AAGAGACUGCUUUCGUGCCGGCCAGGCAGGGGGUUUGUCG	chr6:32940421-32940665(+)$1	244	89	129	13.9098
AGAAAAACUUCAGUUUUGCCAAGUGCAAUGGUGUUGCCUU	chr2:42557679-42557933(+)$1	254	177	217	15.5238
CCACGGGCUCCCCAACUGAAGCCACUCUGGGGAGGGUCCG	chr2:44065679-44065933(-)$1	254	36	76	15.3564
GGCUUCCCCGCGGGAGGGCAUUAGGUGGCUGUGGGGAGGG	chr17:79479259-79479486(-)$1	227	13	53	15.9034
GAGAAGCCCUUCCACUGCGCAGACUGCGGCAAGGGCUUCG	chr16:30544136-30544411(-)$1	275	214	254	14.4076
CACAUAACCACACUGUUGACUACCUCAUUCCUGGUUUUUG	chr2:128605333-128605614(-)$1	281	195	235	14.3441
CUUUAUACAGAACUGAAUUAAGUUAUUGAUUUUUGUAAUA	chr1:27237989-27238259(-)$1	270	225	265	11.9351
GCUGAGGCCCUGGAGGAGGCCGCAGCCAAGGCUCUggggc	chr7:150068798-150069022(+)$1	224	132	172	13.2756
GGUCUCGGCAGGCUCUUCGGGAAGGGUGAGCCAGGGUGGG	chr14:24682457-24682753(-)$1	296	114	154	12.6346
CCUGGGGCGGCUGUGCAGCAGGAGGCUCAAGCUGUCCCAG	chr4:8228913-8229167(+)$1	254	202	242	17.2528
GGGGUAUUGGCCACACGCUGGAAGCUGAAAUUGAUGAUCC	chr2:128622227-128622470(-)$1	243	112	152	12.6050
CCGCCCUCCCGCUCGCCAGUCCAUUUGAUCAGCGGAGACU	chr12:12870382-12870648(+)$1	266	149	189	17.3860
GGCUGUGUGUCUGUUCGACUCCCCUCGCCCCAUUUUCACC	chr2:20647918-20648160(+)$1	242	184	224	14.2669
UUGCCGCUGCAAGCACACGAACAGCGUCAUCUGCAAAGCA	chr5:141693623-141693869(-)$1	246	11	51	18.0412
UCAGUUCCAUAUUUGCCAUGUGUCUGUCCAGAUGUGGGGU	chr6:36936292-36936643(-)$1	351	88	128	15.9027
AAUUUGUUUCACCCCCGUGGAUUCCAGUGGGCCCGACAGC	chr17:56494267-56494521(-)$1	254	97	137	13.4830
GUCUGAGUCACUUGGUCUAAAAAGUAGCCUCAGGUGGCCA	chr20:58513819-58514100(-)$1	281	187	227	13.4813
gccuggcacauaguagaugcucaacaaauacugcuguguu	chr1:156354114-156354361(+)$1	247	38	78	15.1713
CUCCCCCUCCUGGACCAGUCCCCCGCGAGCCCGGAGAAGG	chr2:20647705-20647940(+)$1	235	148	188	14.1229
CUUAUGGACCCCAAGCAUCAUUUCGAGUUGUAGUUGAGUU	chr2:62934028-62934287(+)$1	259	155	195	16.0009
GAGAAGCCCUUCCACUGCGCAGACUGCGGCAAGGGCUUCG	chr16:30544057-30544318(-)$1	261	121	161	13.9640
CUCGGGCUGAGAACCCUGCGUGGGGACAGGGCUCGCCUCA	chr9:130551999-130552240(+)$1	241	157	197	13.2154
UGGAGGAUUGCUAUCUGGAGGCCUUCCAGCUGCUGUCUUC	chr7:92244234-92244492(-)$1	258	123	163	14.3893
GCUAGUAGGCCCUGGUCGUCACUCUGGGCAGGGAUGCCGU	chr19:10802605-10802892(+)$1	287	99	139	13.5973
GAUACGCUCAGACCCGUGCCCUUCGCGUCGGAAAUGGCGA	chr12:89745724-89745967(-)$1	243	157	197	16.6175
GAGGCUCUGCGUCUCUGCGUCCCUCGUCGCCGCCUCGCGC	chr2:86850116-86850361(-)$1	245	133	173	17.7124
ccUCGGGCUUGGCGGGAGCGACGACGUGCAAGACCAAGAG	chr19:56599213-56599469(-)$1	256	114	154	12.6745
GCCCCUCGCGCCUUUUGGGGCUCUCCUGCUGGGCGCGGGU	chr19:4652413-4652665(+)$1	252	50	90	17.3860
GCCCAGGCCCAUUCCCAGCUCCUUGUCUGGGGAGCCUUGG	chr11:116660586-116660851(-)$1	265	18	58	14.5264
UGCUGCUUCCGGGGGAGCUGGCCAAGCACGCCGUGUCGGA	chr6:26158683-26158921(+)$1	238	15	55	17.2940
UGAGAUAAUCUGAGGCAUGGAGAGCAGAUUCAGGgugugu	chr3:5025443-5025674(+)$1	231	37	77	16.3988
CCCCGAACCUGCAGGAUGUGGUAAGGAUGCGGCGGGUACU	chr16:87367390-87367669(-)$1	279	158	198	13.6336
GCGGCCUGCGGCUUCUUGGGAACUCUAGGGCCGCGGCCGG	chr14:31676599-31676816(-)$1	217	118	158	13.4228
CCACGGAGACCUGGACCCGCCCGUGGGCUUCCAGCUGUAC	chr16:30566379-30566620(-)$1	241	39	79	12.9551
GGGUCCGGGGGCCGACGGGGCUGUCCUGGAGGUCCACGUC	chr17:74723064-74723315(+)$1	251	150	190	13.9411
CGGACGCCCGGCGAGUGGCGGAAAGCGAGACCCCGGCGCC	chr14:31676286-31676539(-)$1	253	16	56	15.5043
GACUGCUGACGUGGGAUGUGAAGGACACGCUGCUCAGGCU	chr9:116136536-116136821(-)$1	285	209	249	14.6747
AGGGAUUCAUGGCGUCGGAAAUGAUCUGGCUGAAUCCGUG	chr19:11242527-11242761(+)$1	234	26	66	14.0958
CUCCCCCUCCUGGACCAGUCCCCCGCGAGCCCGGAGAAGG	chr2:20647761-20647989(+)$1	228	92	132	14.1229
AGCGGGCACGCGGUUCCUUUUUGCGAGCUUUCCGAGUGCC	chrX:108976342-108976592(-)$1	250	143	183	17.7893
UGACACAAUCCUCAAACAUGGAAGAUGAAAGGGGAGGGGA	chr19:11242069-11242334(+)$1	265	204	244	17.8312
GUGUGCAUCUUGGAACCUGGAGCAGAAGCACAAGAUUUCA	chr4:38691457-38691755(+)$1	298	80	120	12.7318
CCUCAGUUCCUCAGGGCUGUUGGCCACCCUAUGACUAACU	chr20:30753481-30753763(+)$1	282	153	193	15.0821
CUCGCCGCGGUAGCCGGCCGACGCGCCAGCUUCCCCGGGA	chr17:70117186-70117448(+)$1	262	192	232	13.2617
UGAUCGUGAAUAUCGAGAACUGCCAUUGUCGUCUUUAUGU	chr19:11242768-11243023(+)$1	255	204	244	12.8731
ACAUUAAUAAACUAAAAACUUCAUGUGUCUGGUUGUUUGA	chr10:79800268-79800495(+)$1	227	164	204	16.1952
AGGGAAGAGGGGCGUUUUCGAGGAAGAACCUGUCCCAGGU	chr2:208631468-208631731(-)$1	263	153	193	14.1377
AACUCCGUCUGUCUACUGUGUGAGACUUCGGCGGACCAUU	chr6:30711119-30711350(-)$1	231	180	220	15.0748
UAUCCACCUCCAUUUCAGCAUGUGGCUCGCGUGGACAGGU	chr17:80559968-80560209(+)$1	241	73	113	16.2549
UGUCCUCAAAAGAGAAGGAACAAACCUCCUUGGGAAUCCA	chr2:218668804-218669065(-)$1	261	200	240	12.1024

#DB
(.((((((....((.((((.....)))).))...))))))	chr13:113536990-113537292(+)$1	1	126	166	13.3671
.((((.((.(....(((((.....)))))..).)))))).	chr17:53345122-53345448(+)$1	1	134	174	13.2332
.((((((((((.(((..((......))....))).)))).	chr22:38061593-38061873(+)$1	1	67	107	12.1793
((((((((((..((((((((....))).)))))...))))	chr4:6718444-6718706(+)$1	1	119	159	12.9962
..((((((((((((...((.....))....))).))))))	chr17:18167522-18167799(+)$1	1	60	100	18.5770
....(((.((((((.((((.....))))))))))..))).	chr6:32940421-32940665(+)$1	1	89	129	13.9098
((...(((.(((...((((.....))))))).)))..)))	chr2:42557679-42557933(+)$1	1	177	217	15.5238
...((((((((((....((......))..))).)))))))	chr2:44065679-44065933(-)$1	1	36	76	15.3564
(((((((((((((....((.....))..))))))))))((	chr17:79479259-79479486(-)$1	1	13	53	15.9034
))(((((((((...(((((.....))))).))))))))))	chr16:30544136-30544411(-)$1	1	214	254	14.4076
((...(((((......(((.....)))....)))))..))	chr2:128605333-128605614(-)$1	1	195	235	14.3441
)))).(((((((.(.(((......))).).))))))).))	chr1:27237989-27238259(-)$1	1	225	265	11.9351
)))).((((((((((..(((....)))....)))))))))	chr7:150068798-150069022(+)$1	1	132	172	13.2756
(((((((.(.(((((.((......)).)))))..).))))	chr14:24682457-24682753(-)$1	1	114	154	12.6346
((((((((((((.((.(((.....))))))))))))))))	chr4:8228913-8229167(+)$1	1	202	242	17.2528
((((((((((...((.(((...)))))...))))).))))	chr2:128622227-128622470(-)$1	1	112	152	12.6050
(((((.(((((((...(((.....)))...))))).))..	chr12:12870382-12870648(+)$1	1	149	189	17.3860
((.((.(((..((..(((......)))...))....))).	chr2:20647918-20648160(+)$1	1	184	224	14.2669
((((...((((.(...(((.....)))...)))))..)))	chr5:141693623-141693869(-)$1	1	11	51	18.0412
.((((((((((((((.((......))..))))))))))))	chr6:36936292-36936643(-)$1	1	88	128	15.9027
....((((....(((..(((...)))..)))...))))..	chr17:56494267-56494521(-)$1	1	97	137	13.4830
)((((.(((((((((.(((.....))).).))))))))))	chr20:58513819-58514100(-)$1	1	187	227	13.4813
((..(((((((((((..((.....))..))))).))))))	chr1:156354114-156354361(+)$1	1	38	78	15.1713
((((((((((.((.(..((.....))..))).))))..))	chr2:20647705-20647940(+)$1	1	148	188	14.1229
((((...((....(((.((.....)))))))...))))))	chr2:62934028-62934287(+)$1	1	155	195	16.0009
).(((((((((...(((((.....))))).)))))))))(	chr16:30544057-30544318(-)$1	1	121	161	13.9640
((.((((.(((..((((((.....).))))))))))))..	chr9:130551999-130552240(+)$1	1	157	197	13.2154
((((((((.((...(((((.....)))))..)).))))))	chr7:92244234-92244492(-)$1	1	123	163	14.3893
(((....(((((((.(((......))).))))...)))..	chr19:10802605-10802892(+)$1	1	99	139	13.5973
(((.(((.((...((((((.....))).)))...))))))	chr12:89745724-89745967(-)$1	1	157	197	16.6175
(((((...(((.....(((.....)))))).)))))))))	chr2:86850116-86850361(-)$1	1	133	173	17.7124
(((.(((((((((..(.(((....))).)..).)))))..	chr19:56599213-56599469(-)$1	1	114	154	12.6745
))).(((((((((...(((.....)))...))))))))).	chr19:4652413-4652665(+)$1	1	50	90	17.3860
(((.((((...((((((((.....).))))))))))).))	chr11:116660586-116660851(-)$1	1	18	58	14.5264
(.(.((...(((.(..(((.....))).).))).)).).)	chr6:26158683-26158921(+)$1	1	15	55	17.2940
..(.(((.((((((...((.....))..)))))).))).)	chr3:5025443-5025674(+)$1	1	37	77	16.3988
(((.(.((((((.(.((.(.....).)).).)))))).).	chr16:87367390-87367669(-)$1	1	158	198	13.6336
.(((((.(((((..(((((.....))))))))))))))).	chr14:31676599-31676816(-)$1	1	118	158	13.4228
(..(((..((((((((((......)))..)))))..))..	chr16:30566379-30566620(-)$1	1	39	79	12.9551
(((..((.(((((..((((.....))))..))))).)).)	chr17:74723064-74723315(+)$1	1	150	190	13.9411
(((.((((.((.(..(.((.....)).)..))).))))))	chr14:31676286-31676539(-)$1	1	16	56	15.5043
..))))(((.((((..(((.....)))..)))))))(((.	chr9:116136536-116136821(-)$1	1	209	249	14.6747
(.(((((((....((((((.....))))))))))))).)(	chr19:11242527-11242761(+)$1	1	26	66	14.0958
((((((((((.((.(..((.....))..))).))))..))	chr2:20647761-20647989(+)$1	1	92	132	14.1229
....(((((.(((...(((.....)))....))).)))))	chrX:108976342-108976592(-)$1	1	143	183	17.7893
((((((..(((((...(((.....)))...)))))..)..	chr19:11242069-11242334(+)$1	1	204	244	17.8312
(((((.(((((((...(((...)))...).))))))..))	chr4:38691457-38691755(+)$1	1	80	120	12.7318
.(.(((((..((((((.((.....)))))..)))..))))	chr20:30753481-30753763(+)$1	1	153	193	15.0821
(((.(((.((.(((.(((......))).))).)).)))))	chr17:70117186-70117448(+)$1	1	192	232	13.2617
((..((((((...(((.((......)).)))..)))))).	chr19:11242768-11243023(+)$1	1	204	244	12.8731
(((((((..(((((...((.....))...)))))..))))	chr10:79800268-79800495(+)$1	1	164	204	16.1952
..(((...((((((..(((......)))..))))))...)	chr2:208631468-208631731(-)$1	1	153	193	14.1377
(..((((((((((....((.....))...)))))))....	chr6:30711119-30711350(-)$1	1	180	220	15.0748
..(((((((((((...(((.....)))...)))))..)))	chr17:80559968-80560209(+)$1	1	73	113	16.2549
(.((((.....(((.(((......))).))))))))))))	chr2:218668804-218669065(-)$1	1	200	240	12.1024

#PSSM
c : 0.20	e : 0.10	d : 0.09	f : 0.09	# : 0.07	! : 0.05	= : 0.05	" : 0.05	g : 0.05	[ : 0.03	a : 0.03	D : 0.01	G : 0.01	b : 0.01	i : 0.01	A : 0.01	h : 0.01	o : 0.01	+ : 0.01	
c : 0.14	d : 0.10	e : 0.10	f : 0.09	[ : 0.07	= : 0.07	g : 0.07	" : 0.05	# : 0.05	! : 0.05	D : 0.01	G : 0.01	b : 0.01	i : 0.01	: : 0.01	h : 0.01	o : 0.01	a : 0.01	+ : 0.01	
d : 0.14	f : 0.12	e : 0.10	c : 0.10	= : 0.07	i : 0.07	g : 0.07	! : 0.07	# : 0.05	" : 0.05	[ : 0.05	a : 0.03	D : 0.01	
[ : 0.14	f : 0.12	d : 0.10	e : 0.10	= : 0.09	g : 0.09	i : 0.07	# : 0.07	! : 0.05	c : 0.05	" : 0.03	b : 0.01	: : 0.01	
d : 0.16	c : 0.14	f : 0.12	e : 0.12	= : 0.09	i : 0.07	" : 0.07	g : 0.07	: : 0.03	b : 0.03	# : 0.01	a : 0.01	! : 0.01	
c : 0.14	f : 0.12	d : 0.12	[ : 0.10	= : 0.09	g : 0.09	e : 0.09	i : 0.07	" : 0.07	b : 0.03	# : 0.01	a : 0.01	
c : 0.14	f : 0.12	d : 0.12	g : 0.10	= : 0.09	" : 0.09	i : 0.07	e : 0.07	b : 0.05	! : 0.03	h : 0.01	# : 0.01	[ : 0.01	$ : 0.01	
d : 0.12	[ : 0.12	f : 0.10	e : 0.10	= : 0.09	g : 0.09	i : 0.07	c : 0.07	b : 0.05	" : 0.05	! : 0.05	h : 0.01	$ : 0.01	
e : 0.16	f : 0.12	= : 0.09	c : 0.09	[ : 0.07	d : 0.07	i : 0.07	g : 0.07	b : 0.07	# : 0.03	" : 0.03	! : 0.03	a : 0.01	h : 0.01	$ : 0.01	
e : 0.16	f : 0.12	= : 0.09	c : 0.09	b : 0.09	# : 0.07	d : 0.07	i : 0.07	g : 0.05	[ : 0.05	! : 0.03	a : 0.01	h : 0.01	" : 0.01	$ : 0.01	
e : 0.18	c : 0.12	# : 0.09	f : 0.09	d : 0.07	i : 0.07	= : 0.07	" : 0.07	[ : 0.05	! : 0.03	g : 0.03	b : 0.03	% : 0.01	h : 0.01	$ : 0.01	
e : 0.18	c : 0.14	" : 0.10	# : 0.09	f : 0.09	= : 0.07	[ : 0.05	g : 0.05	b : 0.05	! : 0.03	d : 0.03	% : 0.01	h : 0.01	$ : 0.01	i : 0.01	
e : 0.16	c : 0.14	" : 0.12	b : 0.07	[ : 0.07	a : 0.07	# : 0.05	f : 0.05	= : 0.05	! : 0.03	d : 0.03	g : 0.03	% : 0.01	h : 0.01	$ : 0.01	i : 0.01	
" : 0.20	c : 0.16	e : 0.10	! : 0.09	# : 0.07	f : 0.07	b : 0.05	a : 0.05	= : 0.03	[ : 0.03	d : 0.03	% : 0.01	h : 0.01	$ : 0.01	g : 0.01	
" : 0.20	e : 0.18	[ : 0.12	! : 0.12	c : 0.10	# : 0.05	a : 0.05	= : 0.03	b : 0.03	% : 0.01	$ : 0.01	g : 0.01	f : 0.01	
" : 0.18	c : 0.18	! : 0.16	e : 0.12	[ : 0.09	d : 0.07	# : 0.05	a : 0.03	% : 0.01	$ : 0.01	g : 0.01	b : 0.01	f : 0.01	
c : 0.40	e : 0.12	! : 0.10	[ : 0.09	d : 0.07	" : 0.05	# : 0.05	b : 0.05	g : 0.01	f : 0.01	
c : 0.47	b : 0.29	e : 0.10	d : 0.07	g : 0.01	[ : 0.01	f : 0.01	
c : 0.36	b : 0.25	o : 0.14	e : 0.09	d : 0.07	a : 0.05	f : 0.01	
n : 0.67	o : 0.21	c : 0.07	l : 0.03	
n : 0.67	o : 0.21	m : 0.05	l : 0.05	
n : 0.67	o : 0.21	m : 0.05	l : 0.05	
n : 0.67	o : 0.21	m : 0.05	c : 0.03	l : 0.01	
n : 0.67	o : 0.21	m : 0.05	c : 0.05	
c : 0.45	b : 0.23	e : 0.09	d : 0.07	o : 0.07	a : 0.05	f : 0.01	
c : 0.43	b : 0.30	e : 0.09	d : 0.07	] : 0.05	f : 0.01	3 : 0.01	
c : 0.45	2 : 0.12	e : 0.10	b : 0.09	d : 0.07	3 : 0.05	] : 0.03	4 : 0.01	g : 0.01	f : 0.01	
] : 0.18	2 : 0.18	3 : 0.18	e : 0.12	4 : 0.09	d : 0.07	c : 0.07	b : 0.03	g : 0.01	a : 0.01	f : 0.01	
e : 0.16	c : 0.16	3 : 0.16	a : 0.12	2 : 0.10	4 : 0.09	f : 0.05	] : 0.03	= : 0.03	b : 0.01	d : 0.01	g : 0.01	
c : 0.14	2 : 0.12	e : 0.12	3 : 0.12	] : 0.10	4 : 0.09	b : 0.07	f : 0.05	= : 0.05	d : 0.03	g : 0.03	a : 0.01	
e : 0.21	c : 0.16	b : 0.09	2 : 0.07	4 : 0.07	f : 0.07	g : 0.07	= : 0.05	i : 0.05	a : 0.03	d : 0.03	] : 0.03	h : 0.01	
e : 0.21	c : 0.12	f : 0.09	= : 0.09	3 : 0.07	] : 0.07	g : 0.07	d : 0.07	i : 0.05	b : 0.05	a : 0.03	h : 0.01	2 : 0.01	
e : 0.20	c : 0.12	3 : 0.09	f : 0.09	= : 0.09	d : 0.09	g : 0.07	] : 0.05	i : 0.05	b : 0.05	2 : 0.03	4 : 0.01	h : 0.01	
e : 0.18	3 : 0.10	c : 0.10	f : 0.10	] : 0.09	= : 0.09	d : 0.09	g : 0.07	i : 0.05	b : 0.03	2 : 0.01	4 : 0.01	h : 0.01	
e : 0.14	d : 0.14	f : 0.10	i : 0.09	g : 0.09	= : 0.09	] : 0.07	2 : 0.07	b : 0.05	3 : 0.03	c : 0.03	a : 0.01	4 : 0.01	h : 0.01	
d : 0.14	2 : 0.14	f : 0.10	i : 0.09	g : 0.09	= : 0.09	e : 0.09	] : 0.07	c : 0.07	b : 0.03	3 : 0.01	4 : 0.01	h : 0.01	
2 : 0.14	d : 0.12	c : 0.12	= : 0.10	e : 0.10	i : 0.09	g : 0.09	f : 0.07	b : 0.05	h : 0.01	] : 0.01	3 : 0.01	5 : 0.01	
c : 0.14	d : 0.10	= : 0.10	e : 0.10	i : 0.09	f : 0.07	g : 0.07	2 : 0.07	b : 0.05	] : 0.05	a : 0.03	: : 0.01	h : 0.01	3 : 0.01	5 : 0.01	
c : 0.14	f : 0.10	e : 0.10	d : 0.09	= : 0.09	i : 0.09	g : 0.09	3 : 0.09	2 : 0.05	] : 0.05	a : 0.03	F : 0.01	5 : 0.01	
c : 0.12	f : 0.09	= : 0.09	3 : 0.09	g : 0.09	e : 0.09	2 : 0.09	d : 0.07	] : 0.05	F : 0.05	5 : 0.03	i : 0.03	b : 0.01	: : 0.01	a : 0.01	" : 0.01	

#score	808.8198314235075
#seq	55
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF304YLR_TBRG4_transcript_m3_run1.txt

#BEAR
::::::::::::::::::::::::::::::	chrM:8405-8637(+)$1	232	0	30	13.4414
::::::::::::::::::::::::::::::	chrM:13305-13575(+)$1	270	74	104	13.4414
::::::::::::::::::::::::::::::	chrM:8594-8814(+)$1	220	0	30	13.4414
B:::::::::::::::::::::::::::::	chrM:13437-13679(+)$1	242	211	241	13.2270
EE{CCC::::::::::::::::::::::::	chrM:12622-12862(+)$1	240	75	105	11.4820
::::::::::::::::::::::::::::::	chr16:10816694-10816927(-)$1	233	191	221	13.4414
::::::::::::::::::::::::::::::	chrM:13171-13415(+)$1	244	208	238	13.4414
::::::::::::::::::::::::::::::	chrM:10803-11027(+)$1	224	113	143	13.4414
::::::::::::::::::::::::::::::	chrM:7211-7448(+)$1	237	185	215	13.4414
::::::::::::::::::::::::::::::	chrM:11032-11262(+)$1	230	0	30	13.4414
::::::::::::::::::::::::::::::	chrM:10187-10394(+)$1	207	0	30	13.4414
::::::::::::::::::::::::::::::	chrM:12533-12742(+)$1	209	42	72	13.4414
::::::::::::::::::::::::::::::	chrM:13608-13840(+)$1	232	153	183	13.4414
::::::::::::::::::::::::::::::	chrM:11668-11876(+)$1	208	133	163	13.4414
::::::::::::::::::::::::::::::	chrM:10827-11055(+)$1	228	89	119	13.4414
::::::::::::::::::::::::::::::	chrM:9506-9728(+)$1	222	141	171	13.4414
C:::::::::::::::::::::::::::::	chrM:4846-5085(+)$1	239	208	238	13.1822
::::::::::::::::::::::::::::::	chrM:9802-10028(+)$1	226	59	89	13.4414
::::::::::::::::::::::::::::::	chrM:13947-14170(+)$1	223	95	125	13.4414
::::::::::::::::::::::::::::::	chrM:7757-7978(+)$1	221	177	207	13.4414
::::::::::::::::::::::::::::::	chrM:15590-15813(+)$1	223	61	91	13.4414
::::::::::::::::::::::::::::cc	chrM:10146-10373(+)$1	227	179	209	11.5553
::::::::::::::::::::::::::::::	chrM:5324-5599(+)$1	275	35	65	13.4414
::::::::::::::::::::::::::::::	chrM:9484-9706(+)$1	222	163	193	13.4414
:::::::::::::::::::::::::EEEEE	chrM:10194-10408(+)$1	214	0	30	11.1162
::::::::::::::::::::::::::::::	chrM:9528-9752(+)$1	224	119	149	13.4414
::::::::::::::::::::::::::::::	chrM:7248-7452(+)$1	204	148	178	13.4414
::::::::::::::::::::::::::::::	chrM:10750-10956(+)$1	206	72	102	13.4414
::::::::::::::::::::::::::::::	chrM:7783-7989(+)$1	206	147	177	13.4414
::::::::::::::::::::::::::::::	chrM:13589-13808(+)$1	219	141	171	13.4414
::::::::::::::::::::::::::::::	chrM:9828-10035(+)$1	207	33	63	13.4414
::::::::::::CCC:::::::::::::::	chrM:10710-10950(+)$1	240	53	83	12.5453
::::::::::::::::::::::::::::::	chrM:10782-10990(+)$1	208	134	164	13.4414
::::::::::::::::::::::::::::::	chrM:13375-13593(+)$1	218	0	30	13.4414
::::::::::::::::::::::::::::::	chrM:10791-10995(+)$1	204	125	155	13.4414
::::::::::::::::::::::::::::::	chrM:15392-15603(+)$1	211	0	30	13.4414
::::::::::::::::::::::::::::::	chrM:8440-8658(+)$1	218	0	30	13.4414
::::::::::::::::::::::::::::::	chrM:10756-10982(+)$1	226	66	96	13.4414
::::::::::::::::::::::::::::::	chrM:4584-4823(+)$1	239	138	168	13.4414
:::::::::::::::::::::::CCC{CCC	chrM:10180-10387(+)$1	207	0	30	11.5424
::::::::::::::::::::::::::::::	chr5:134263533-134263776(-)$1	243	155	185	13.4414
::::::::::::::::::::::::::::::	chrM:10869-11084(+)$1	215	0	30	13.4414
::::::::::::::::::::::::::::::	chrM:15458-15708(+)$1	250	0	30	13.4414
::::::::::::::::::::::::::::::	chrM:12187-12420(+)$1	233	181	211	13.4414
::::::::::::::::::::::::::::::	chrM:8510-8744(+)$1	234	110	140	13.4414
::::::::::::::::::::::::::::::	chrM:15708-15927(+)$1	219	100	130	13.4414
::::::::::::::::::::::::::::::	chrM:7793-8044(+)$1	251	24	54	13.4414
::::::::::::::::::::::::::::::	chrM:12501-12710(+)$1	209	74	104	13.4414
::::::::::::::::::::::::::::::	chrM:12567-12821(+)$1	254	120	150	13.4414
::::::::::::::::::::::::::::::	chrM:7778-7983(+)$1	205	156	186	13.4414
::::::::::::::::::::::::::::::	chrM:13804-14076(+)$1	272	238	268	13.4414
::::::::::::::::::::::::::::::	chrM:10795-11002(+)$1	207	121	151	13.4414
::::::::::::::::::::::::::::::	chrM:7789-7993(+)$1	204	28	58	13.4414
H:::::::::::::::::::::::::::::	chrM:10209-10429(+)$1	220	49	79	12.9729
EEEE::::::::::::::::::::::::::	chrM:7744-7957(+)$1	213	182	212	11.5986
:::::::::::::::::::::::::::::E	chrM:15404-15625(+)$1	221	118	148	13.0076
::::::::::::::::::::::::::::::	chrM:15613-15863(+)$1	250	21	51	13.4414
::::::::::::::::::::::::::::::	chrM:8437-8640(+)$1	203	0	30	13.4414
::::::::::::::::::::::::::::::	chrM:10131-10346(+)$1	215	105	135	13.4414
::::::::::::::::::::::::::::::	chr1:568952-569203(+)$1	251	0	30	13.4414
::::::::::::::::::::::::::::::	chrM:12510-12733(+)$1	223	65	95	13.4414

#otherMatches

#Seq PSSM
ACCCCCAUACUCCUUACACUAUUCCUCAUC	chrM:8405-8637(+)$1	232	0	30	13.4414
ACAACCUUAACAAUGAACAAGAUAUUCGAA	chrM:13305-13575(+)$1	270	74	104	13.4414
UCAUUCUAUUUCCCCCUCUAUUGAUCCCCA	chrM:8594-8814(+)$1	220	0	30	13.4414
CCCACCCUUACUAACAUUAACGAAAAUAAC	chrM:13437-13679(+)$1	242	211	241	13.2270
CUACUCAUUUUCCUAAUUACCAUACUAAUC	chrM:12622-12862(+)$1	240	75	105	11.4820
CCCCUUCUAAUCUUAACAUCCUGACUACUA	chr16:10816694-10816927(-)$1	233	191	221	13.4414
ACAACCUUAACAAUGAACAAGAUAUUCGAA	chrM:13171-13415(+)$1	244	208	238	13.4414
UCCCCAACCUUUUCCUCCGACCCCCUAACA	chrM:10803-11027(+)$1	224	113	143	13.4414
GCCCCCCACCCUACCACACAUUCGAAGAAC	chrM:7211-7448(+)$1	237	185	215	13.4414
AAAAAAACUCUACCUCUCUAUACUAAUCUC	chrM:11032-11262(+)$1	230	0	30	13.4414
UAUAUCCCCCGCCCGCGUCCCUUUCUCCAU	chrM:10187-10394(+)$1	207	0	30	13.4414
UCAAACUAGACUACUUCUCCAUAAUAUUCA	chrM:12533-12742(+)$1	209	42	72	13.4414
AUCCCCCUUCCAAACAACAAUCCCCCUCUA	chrM:13608-13840(+)$1	232	153	183	13.4414
CUUCAAACUCUACUCCCACUAAUAGCUUUU	chrM:11668-11876(+)$1	208	133	163	13.4414
UCCCCAACCUUUUCCUCCGACCCCCUAACA	chrM:10827-11055(+)$1	228	89	119	13.4414
UCACCAUAGUCUAAUAGAAAACAACCGAAA	chrM:9506-9728(+)$1	222	141	171	13.4414
GUACAACCCUAACAUAACCAUUCUUAAUUU	chrM:4846-5085(+)$1	239	208	238	13.1822
UUCAUCCGCCAACUAAUAUUUCACUUUACA	chrM:9802-10028(+)$1	226	59	89	13.4414
ACCAAAUCUCCACCUCCAUCAUCACCUCAA	chrM:13947-14170(+)$1	223	95	125	13.4414
AUCUUCAACUCCUACAUACUUCCCCCAUUA	chrM:7757-7978(+)$1	221	177	207	13.4414
CAAUAAUCCCCAUCCUCCAUAUAUCCAAAC	chrM:15590-15813(+)$1	223	61	91	13.4414
GUCAUCCCUCUUAUUAAUCAUCAUCCUAGC	chrM:10146-10373(+)$1	227	179	209	11.5553
UCUACUCCACCUCAAUCACACUACUCCCCA	chrM:5324-5599(+)$1	275	35	65	13.4414
UCACCAUAGUCUAAUAGAAAACAACCGAAA	chrM:9484-9706(+)$1	222	163	193	13.4414
CCCGCCCGCGUCCCUUUCUCCAUAAAAUUC	chrM:10194-10408(+)$1	214	0	30	11.1162
UCACCAUAGUCUAAUAGAAAACAACCGAAA	chrM:9528-9752(+)$1	224	119	149	13.4414
GCCCCCCACCCUACCACACAUUCGAAGAAC	chrM:7248-7452(+)$1	204	148	178	13.4414
CAUAAUUUGAAUCAACACAACCACCCACAG	chrM:10750-10956(+)$1	206	72	102	13.4414
ACUAAUCUUCAACUCCUACAUACUUCCCCC	chrM:7783-7989(+)$1	206	147	177	13.4414
GAUUUCUCAUUACUAACAACAUUUCCCCCG	chrM:13589-13808(+)$1	219	141	171	13.4414
UUCAUCCGCCAACUAAUAUUUCACUUUACA	chrM:9828-10035(+)$1	207	33	63	13.4414
CUAAAACUAAUCGUCCCAACAAUUAUAUUA	chrM:10710-10950(+)$1	240	53	83	12.5453
UCCCCAACCUUUUCCUCCGACCCCCUAACA	chrM:10782-10990(+)$1	208	134	164	13.4414
AUCCACAACCUUAACAAUGAACAAGAUAUU	chrM:13375-13593(+)$1	218	0	30	13.4414
UCCCCAACCUUUUCCUCCGACCCCCUAACA	chrM:10791-10995(+)$1	204	125	155	13.4414
GAUAAAAUCACCUUCCACCCUUACUACACA	chrM:15392-15603(+)$1	211	0	30	13.4414
ACUAAAAAUAUUAAACACAAACUACCACCU	chrM:8440-8658(+)$1	218	0	30	13.4414
CAUAAUUUGAAUCAACACAACCACCCACAG	chrM:10756-10982(+)$1	226	66	96	13.4414
ACCAUAACCAAUACUACCAAUCAAUACUCA	chrM:4584-4823(+)$1	239	138	168	13.4414
UCGACCCUAUAUCCCCCGCCCGCGUCCCUU	chrM:10180-10387(+)$1	207	0	30	11.5424
ACCAUCCCCCUACUAUUUUUCAACCAAAUC	chr5:134263533-134263776(-)$1	243	155	185	13.4414
UCCCCCUACUAUUUUUUAACCAAAUCAACA	chrM:10869-11084(+)$1	215	0	30	13.4414
UCCUUAAUGACAUUAACACUAUUCUCACCA	chrM:15458-15708(+)$1	250	0	30	13.4414
CCCUGACUUCCCUAAUUCCCCCCAUCCUUA	chrM:12187-12420(+)$1	233	181	211	13.4414
CCCACCUCCAAAUAUCUCAUCAACAACCGA	chrM:8510-8744(+)$1	234	110	140	13.4414
AUCCGUACUAUACUUCACAACAAUCCUAAU	chrM:15708-15927(+)$1	219	100	130	13.4414
CUCCCAUCCCUACGCAUCCUUUACAUAACA	chrM:7793-8044(+)$1	251	24	54	13.4414
UCAAACUAGACUACUUCUCCAUAAUAUUCA	chrM:12501-12710(+)$1	209	74	104	13.4414
CUUCAAAUAUCUACUCAUUUUCCUAAUUAC	chrM:12567-12821(+)$1	254	120	150	13.4414
AUCUUCAACUCCUACAUACUUCCCCCAUUA	chrM:7778-7983(+)$1	205	156	186	13.4414
ACCAAAUCUCCACCUCCAUCAUCACCUCAA	chrM:13804-14076(+)$1	272	238	268	13.4414
UCCCCAACCUUUUCCUCCGACCCCCUAACA	chrM:10795-11002(+)$1	207	121	151	13.4414
CUCCCAUCCCUACGCAUCCUUUACAUAACA	chrM:7789-7993(+)$1	204	28	58	13.4414
UAGAAAUUGCCCUCCUUUUACCCCUACCAU	chrM:10209-10429(+)$1	220	49	79	12.9729
GCGGACUAAUCUUCAACUCCUACAUACUUC	chrM:7744-7957(+)$1	213	182	212	11.5986
CCAACCCCUUAAACACCCCUCCCCACAUCA	chrM:15404-15625(+)$1	221	118	148	13.0076
AUCCAUCCUCAUCCUAGCAAUAAUCCCCAU	chrM:15613-15863(+)$1	250	21	51	13.4414
CCAACUAAAAAUAUUAAACACAAACUACCA	chrM:8437-8640(+)$1	203	0	30	13.4414
AUUACCUUCUUAUUAUUUGAUCUAGAAAUU	chrM:10131-10346(+)$1	215	105	135	13.4414
UACCCCCAUACUCCUUACACUAUUCCUCAU	chr1:568952-569203(+)$1	251	0	30	13.4414
UCAAACUAGACUACUUCUCCAUAAUAUUCA	chrM:12510-12733(+)$1	223	65	95	13.4414

#DB
..............................	chrM:8405-8637(+)$1	1	0	30	13.4414
..............................	chrM:13305-13575(+)$1	1	74	104	13.4414
..............................	chrM:8594-8814(+)$1	1	0	30	13.4414
).............................	chrM:13437-13679(+)$1	1	211	241	13.2270
((.(((........................	chrM:12622-12862(+)$1	1	75	105	11.4820
..............................	chr16:10816694-10816927(-)$1	1	191	221	13.4414
..............................	chrM:13171-13415(+)$1	1	208	238	13.4414
..............................	chrM:10803-11027(+)$1	1	113	143	13.4414
..............................	chrM:7211-7448(+)$1	1	185	215	13.4414
..............................	chrM:11032-11262(+)$1	1	0	30	13.4414
..............................	chrM:10187-10394(+)$1	1	0	30	13.4414
..............................	chrM:12533-12742(+)$1	1	42	72	13.4414
..............................	chrM:13608-13840(+)$1	1	153	183	13.4414
..............................	chrM:11668-11876(+)$1	1	133	163	13.4414
..............................	chrM:10827-11055(+)$1	1	89	119	13.4414
..............................	chrM:9506-9728(+)$1	1	141	171	13.4414
).............................	chrM:4846-5085(+)$1	1	208	238	13.1822
..............................	chrM:9802-10028(+)$1	1	59	89	13.4414
..............................	chrM:13947-14170(+)$1	1	95	125	13.4414
..............................	chrM:7757-7978(+)$1	1	177	207	13.4414
..............................	chrM:15590-15813(+)$1	1	61	91	13.4414
............................((	chrM:10146-10373(+)$1	1	179	209	11.5553
..............................	chrM:5324-5599(+)$1	1	35	65	13.4414
..............................	chrM:9484-9706(+)$1	1	163	193	13.4414
.........................(((((	chrM:10194-10408(+)$1	1	0	30	11.1162
..............................	chrM:9528-9752(+)$1	1	119	149	13.4414
..............................	chrM:7248-7452(+)$1	1	148	178	13.4414
..............................	chrM:10750-10956(+)$1	1	72	102	13.4414
..............................	chrM:7783-7989(+)$1	1	147	177	13.4414
..............................	chrM:13589-13808(+)$1	1	141	171	13.4414
..............................	chrM:9828-10035(+)$1	1	33	63	13.4414
............(((...............	chrM:10710-10950(+)$1	1	53	83	12.5453
..............................	chrM:10782-10990(+)$1	1	134	164	13.4414
..............................	chrM:13375-13593(+)$1	1	0	30	13.4414
..............................	chrM:10791-10995(+)$1	1	125	155	13.4414
..............................	chrM:15392-15603(+)$1	1	0	30	13.4414
..............................	chrM:8440-8658(+)$1	1	0	30	13.4414
..............................	chrM:10756-10982(+)$1	1	66	96	13.4414
..............................	chrM:4584-4823(+)$1	1	138	168	13.4414
.......................(((.(((	chrM:10180-10387(+)$1	1	0	30	11.5424
..............................	chr5:134263533-134263776(-)$1	1	155	185	13.4414
..............................	chrM:10869-11084(+)$1	1	0	30	13.4414
..............................	chrM:15458-15708(+)$1	1	0	30	13.4414
..............................	chrM:12187-12420(+)$1	1	181	211	13.4414
..............................	chrM:8510-8744(+)$1	1	110	140	13.4414
..............................	chrM:15708-15927(+)$1	1	100	130	13.4414
..............................	chrM:7793-8044(+)$1	1	24	54	13.4414
..............................	chrM:12501-12710(+)$1	1	74	104	13.4414
..............................	chrM:12567-12821(+)$1	1	120	150	13.4414
..............................	chrM:7778-7983(+)$1	1	156	186	13.4414
..............................	chrM:13804-14076(+)$1	1	238	268	13.4414
..............................	chrM:10795-11002(+)$1	1	121	151	13.4414
..............................	chrM:7789-7993(+)$1	1	28	58	13.4414
(.............................	chrM:10209-10429(+)$1	1	49	79	12.9729
))))..........................	chrM:7744-7957(+)$1	1	182	212	11.5986
.............................)	chrM:15404-15625(+)$1	1	118	148	13.0076
..............................	chrM:15613-15863(+)$1	1	21	51	13.4414
..............................	chrM:8437-8640(+)$1	1	0	30	13.4414
..............................	chrM:10131-10346(+)$1	1	105	135	13.4414
..............................	chr1:568952-569203(+)$1	1	0	30	13.4414
..............................	chrM:12510-12733(+)$1	1	65	95	13.4414

#PSSM
: : 0.91	E : 0.03	B : 0.01	C : 0.01	H : 0.01	
: : 0.96	E : 0.03	
: : 0.96	{ : 0.01	E : 0.01	
: : 0.96	C : 0.01	E : 0.01	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 0.96	E : 0.01	C : 0.01	
: : 0.96	E : 0.01	{ : 0.01	
: : 0.96	E : 0.01	C : 0.01	
: : 0.95	c : 0.01	E : 0.01	C : 0.01	
: : 0.93	E : 0.03	c : 0.01	C : 0.01	

#score	807.7455066288093
#seq	61
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_UTR_m2_run1.txt

#BEAR
ccc####ddddwwwwwwwwwwwwwwdddd333cccggggg	chr10:133757344-133757653(+)$1	309	99	139	20.3179
ggggggg^^^^^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr11:125893255-125893539(-)$1	284	74	114	35.9260
eeeee[cccbb^^^^^^^^^^^^^^^^^^^bb]ccc22ee	chr9:33963654-33963903(-)$1	249	110	150	33.0753
eeeee[aeeeee^^^^^^^^^^^^^^^^^^eeeee]a]ee	chr3:136141750-136142006(-)$1	256	168	208	32.4654
[dddd[bb[dddd^^^^^^^^^^^^^^^^^^dddd]bb33	chr3:9512028-9512284(+)$1	256	87	127	31.6571
eeee::ffffff^^^^^^^^^^^^^^^^^^^ffffff:::	chr19:33077645-33077897(+)$1	252	124	164	29.7954
ii!!bb[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr5:38959257-38959541(-)$1	284	50	90	37.5380
e####ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr20:42836098-42836348(-)$1	250	55	95	38.9784
""ccc!!ccc!!ddddxxxxxxxxxxxxxxxdddd22ccc	chr4:139101786-139102046(-)$1	260	69	109	21.3168
:::::ffffff^^^^^^^^^^^^^^^^^^^^ffffff:::	chr4:129012301-129012614(+)$1	313	159	199	29.3582
dddd####ccc^^^^^^^^^^^^^^^^^^^^^^^ccc333	chr3:124393592-124393854(+)$1	262	104	144	37.7238
eeee!!a[ccc^^^^^^^^^^^^^^^^^^^^^^ccc333a	chr2:64089859-64090108(+)$1	249	23	63	37.8018
&&&bb!!dddd^^^^^^^^^^^^^^^^^^^dddd22bb22	chr15:78770516-78770790(+)$1	274	51	91	32.1144
===========^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr4:88116706-88116977(-)$1	271	76	116	38.8136
b!!bbffffff^^^^^^^^^^^^^^^^^^^^^^ffffff>	chr3:156870805-156871060(-)$1	255	129	169	36.0448
EEEEEffffff^^^^^^^^^^^^^^^^^^ffffffddddm	chr16:67863842-67864112(-)$1	270	89	129	26.7834
===========^^^^^^^^^^^^^^^^^^^^=========	chr17:47696599-47696856(-)$1	257	62	102	35.8950
ff!!bbeeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:31729729-31730041(+)$1	312	79	119	38.2419
G::::ffffff^^^^^^^^^^^^^^^^^^^^^^^ffffff	chr20:44076897-44077179(+)$1	282	74	114	32.9090
&&&&&ffffff^^^^^^^^^^^^^^^^^^^^ffffff333	chr8:124827091-124827383(+)$1	292	187	227	34.1749
c"""ggggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:17838237-17838514(-)$1	277	59	99	38.8431
eeeee"""ccc^^^^^^^^^^^^^^^^^^ccc333eeeee	chr3:11831916-11832171(-)$1	255	85	125	32.8809
e!!a[ffffff^^^^^^^^^^^^^^^^^^^^ffffff]a2	chr7:6156307-6156574(+)$1	267	137	177	35.7151
%%%%%ffffff^^^^^^^^^^^^^^^^^^^^^ffffff88	chr14:21463030-21463306(+)$1	276	160	200	33.7667
'ccc[ccc^^^^^^^^^^^^^^^^^^^^^^^ccc]ccc66	chr2:183619619-183619891(+)$1	272	63	103	35.1662
"""dddd[dddd[cccwwwwwwwwwwwwwwccc]dddddd	chr12:49054211-49054530(-)$1	319	244	284	19.6619
c####dddd[ccc^^^^^^^^^^^^^^^^^^ccc]dddd6	chr20:43567659-43567933(+)$1	274	168	208	33.0754
ffff[a!!eeeee^^^^^^^^^^^^^^^^^^eeeee22a]	chr6:13327023-13327290(-)$1	267	135	175	32.6012
eeee"""dddd^^^^^^^^^^^^^^^^^^^^^dddd4444	chr14:21678129-21678391(-)$1	262	182	222	36.9252
hhhhhhhh^^^^^^^^^^^^^^^^^^^^^^^^hhhhhhhh	chr4:124322571-124322833(+)$1	262	42	82	30.9729
dddd"""dddd^^^^^^^^^^^^^^^^^^^^dddd333dd	chr1:146629581-146629819(-)$1	238	128	168	35.5565
:::::eeeee[bb^^^^^^^^^^^^^^^^^^bb]eeeee:	chr2:44618811-44619148(+)$1	337	286	326	27.8750
==[bbffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:5494186-5494483(+)$1	297	70	110	38.3589
===========^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:32859492-32859765(+)$1	273	89	129	38.8136
::::::eeeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr2:242404971-242405230(+)$1	259	218	258	32.3826
ff$$$$$dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:76198212-76198464(+)$1	252	15	55	38.0424
bb&&&&&&&ccc^^^^^^^^^^^^^^^^^^^ccc55555b	chr5:38975581-38975837(-)$1	256	67	107	28.6041
%%%%ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr14:102661159-102661415(+)$1	256	174	214	36.1162
(ccc!!eeeee^^^^^^^^^^^^^^^^^^^eeeee22ccc	chr11:9191346-9191598(-)$1	252	116	156	33.8696
ccc!!dddd^^^^^^^^^^^^^^^^^^^^^^^dddd]ccc	chr2:190648006-190648253(-)$1	247	130	170	35.9398
gg]bb:eeeee^^^^^^^^^^^^^^^^^^^^eeeee::bb	chr5:33453285-33453538(+)$1	253	74	114	31.9923
======[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr9:134067478-134067739(+)$1	261	60	100	38.7164
ggggg[eeeee^^^^^^^^^^^^^^^^^^^^eeeee]ggg	chr1:173962121-173962406(-)$1	285	89	129	35.2470
!!dddddddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:113914449-113914703(-)$1	254	10	50	38.2468
d]ddddccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^cc	chr14:65568148-65568402(-)$1	254	135	175	37.2115
b[eeeee[bb^^^^^^^^^^^^^^^^^^^^^^bbeeeee]	chr6:158487745-158488002(+)$1	257	20	60	34.8375
dd[dddd!!bb^^^^^^^^^^^^^^^^^^^^bb22ddddd	chr13:99101700-99101917(+)$1	217	61	101	33.4012
!!ddddggggggg^^^^^^^^^^^^^^^^^^ggggggg]d	chr17:31271726-31272035(+)$1	309	133	173	32.1552
[eeeee[ccc^^^^^^^^^^^^^^^^^^^^^ccceeeee]	chr4:88011014-88011278(+)$1	264	18	58	35.4391
[ccc[bb[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^cc	chr17:47782487-47782756(-)$1	269	75	115	38.0197

#otherMatches

#Seq PSSM
UUGAAUUCCUAUUUCCUUCCAUUUUUAGGUCCCAAUAUUG	chr10:133757344-133757653(+)$1	309	99	139	20.3179
UGGUUUAGAUUUUCUUUCCUUUUUCUUUUUUAGUGAACCA	chr11:125893255-125893539(-)$1	284	74	114	35.9260
ACAGAACUGGCAUCAAAUACUCACAACAUAGCUCAGGAUC	chr9:33963654-33963903(-)$1	249	110	150	33.0753
UUGACUGAACAUUUUAUUAUUACACUUCCUAUGUUACUGU	chr3:136141750-136142006(-)$1	256	168	208	32.4654
UGUCUCCGUUGAUUUUUAUUCUUUCAGCUUUGUCACCGAA	chr3:9512028-9512284(+)$1	256	87	127	31.6571
GAACAAGGUUUAAUAGAAAUCCUUAAAAAAGUAAGCCAAC	chr19:33077645-33077897(+)$1	252	124	164	29.7954
UAUUUGUUUAAUUAAUGUAUCAAUAUAGUAAUUUCUUUUA	chr5:38959257-38959541(-)$1	284	50	90	37.5380
UUGCAAGUGUAUAGUUCAUUUAUUUUCUUUCUUGUUUAAC	chr20:42836098-42836348(-)$1	250	55	95	38.9784
AUUCACCAAGCUUGCUUCCCUUUCCCCCCUCAGCACCCUU	chr4:139101786-139102046(-)$1	260	69	109	21.3168
CUAAUAUGUGAUUACCUUUCUUUUUCUUUAUUCACAUCAA	chr4:129012301-129012614(+)$1	313	159	199	29.3582
UAAUUUUCUGUUCAUUUUUCCCCCUUUCUCCCCCACAUUC	chr3:124393592-124393854(+)$1	262	104	144	37.7238
GCCAGUCCCUCCAAUUCCAAUUUCCACCCCACAGAGAAAG	chr2:64089859-64090108(+)$1	249	23	63	37.8018
ccugucugaaaaaaaUAAUAACUAAAUAAAUUUCUCACUG	chr15:78770516-78770790(+)$1	274	51	91	32.1144
GUUAACAAUAAUUUUUUUCUUUUCGUUUGUCUCUACCUGU	chr4:88116706-88116977(-)$1	271	76	116	38.8136
UGAUCCUUGAUCAGAACUACAUUAACACCAAAAAUCAAGU	chr3:156870805-156871060(-)$1	255	129	169	36.0448
UCUCCGGCCUGUAUUCUCUCCCCUUCACUCAGGCCCUGGG	chr16:67863842-67864112(-)$1	270	89	129	26.7834
CAAAAUGGAUGCUUUUGACAUUUUUUUUUUCUAUCUGUUU	chr17:47696599-47696856(-)$1	257	62	102	35.8950
GGUCCACAGGAUUUCUGACCCUUAUUUCCCCUUCUCUUCC	chr6:31729729-31730041(+)$1	312	79	119	38.2419
CCUUCUCUGCUUCCUCCUCAACCUUCUCCUUCACAGCAGA	chr20:44076897-44077179(+)$1	282	74	114	32.9090
ACAAAUAUCAAAAAAGACAUAGAAUUUAAUAUUGAUACAA	chr8:124827091-124827383(+)$1	292	187	227	34.1749
UCUAUGAAAGUCACGUUUAUUUUUUUCACCUUCUAAAAUU	chr7:17838237-17838514(-)$1	277	59	99	38.8431
UCUUCUUACUUUCUCAUCUUUUCUCUUUUAGGCCUGAAGA	chr3:11831916-11832171(-)$1	255	85	125	32.8809
AGACAGCUUUCCUAUCACUUUUGCGCUUAAUGAAAGUAGG	chr7:6156307-6156574(+)$1	267	137	177	35.7151
CUCCAUCCUGAUUAUGUAAUGCCUAUUUCUUUUUAGGACU	chr14:21463030-21463306(+)$1	276	160	200	33.7667
UAGGUGAAAUCUAUAAAAUCUUUAAUUCAUAUUCUCCUUC	chr2:183619619-183619891(+)$1	272	63	103	35.1662
UUCCAGUUGCCUCCUCAGAUGUAUAAGCCCGAGCAGGUAC	chr12:49054211-49054530(-)$1	319	244	284	19.6619
GGCCCUGCAAACUCUAACUUAUUUCCCAAUUAGUCUGUAU	chr20:43567659-43567933(+)$1	274	168	208	33.0754
UCUGUGUCUCCUCCAAGAAUGAAAUAUGACUGAGGACUCU	chr6:13327023-13327290(-)$1	267	135	175	32.6012
CUUACUUCCUGAUAUUCCAUAGACUGCCUUCCCAGGUGAU	chr14:21678129-21678391(-)$1	262	182	222	36.9252
UGACAGGAUUCCCCCCCCCCAAAAAAAAUGCUUCCUGUCA	chr4:124322571-124322833(+)$1	262	42	82	30.9729
GCAGAUAAGUCAAAUAAUCAACACUAAAGGAGGCUAAACU	chr1:146629581-146629819(-)$1	238	128	168	35.5565
aucaucucuaugaaccucaacuguuuucaucuCUUAGGGC	chr2:44618811-44619148(+)$1	337	286	326	27.8750
AAUGGGAAUAAUUCUAUUUCUUCCAAAUCUUAUUUUCUCU	chr10:5494186-5494483(+)$1	297	70	110	38.3589
UGUUUUUCCUUUUCUUCCAUUUUAUUUCUUUCCUGCCUCC	chr12:32859492-32859765(+)$1	273	89	129	38.8136
CCAUCCCUCGCCUGUCCCACCUUCUACCCAAUCCUGCGAG	chr2:242404971-242405230(+)$1	259	218	258	32.3826
GAUUUAAGUCCCCACAAUAAAUACACAUUUCUACAUACUG	chr1:76198212-76198464(+)$1	252	15	55	38.0424
GGAAAAAACUCAUUUUAACAUUUUAUUUCAUUGAUUCUCC	chr5:38975581-38975837(-)$1	256	67	107	28.6041
UCAUGACUUCAACCACCUAACAGCCACAGCAGAAAGUGUC	chr14:102661159-102661415(+)$1	256	174	214	36.1162
AUGCCCCUGCCCAGUGGAGGCGGAAAGAUCGGCAGAAGCA	chr11:9191346-9191598(-)$1	252	116	156	33.8696
CUUCAGGACAGUUUUAUUUUAAGCAAUUCUUAGUCUCAAG	chr2:190648006-190648253(-)$1	247	130	170	35.9398
UGUGUGGACuuuuuuuuuuuuuuuuuuuuuuAAGUCAAGG	chr5:33453285-33453538(+)$1	253	74	114	31.9923
UGUCUUUUUGUAAUAuucuuuuuuuuuuuuuuuuuuuuuu	chr9:134067478-134067739(+)$1	261	60	100	38.7164
GAAAAGAAAGACACUCAAUUUUUUUCCUUUUUCUUUAUUU	chr1:173962121-173962406(-)$1	285	89	129	35.2470
CUCUUUUCUUUCCCCUUCCCUUUCUUAUUUACCUCAAUAU	chr10:113914449-113914703(-)$1	254	10	50	38.2468
UGCGGUACGUCUCCUACUCUCCAUUUCAUUUUUAUUUCCG	chr14:65568148-65568402(-)$1	254	135	175	37.2115
UUUGGUGUCUUCCCUCCUCACAAUGUCUAAAUAGCACCAU	chr6:158487745-158488002(+)$1	257	20	60	34.8375
GGAGGCGAGGGCCAAUUCAACCCCAUUCUUUCCAGCGCCC	chr13:99101700-99101917(+)$1	217	61	101	33.4012
CAUCCUAUUUguauuuuuauuaucccaauuuugcagguaa	chr17:31271726-31272035(+)$1	309	133	173	32.1552
CCAUUUAUGAUCAAUCCAUUCUACAUUAAGUUCAAAAUGU	chr4:88011014-88011278(+)$1	264	18	58	35.4391
UGGAUGCCUGAAUUUUCCACUCUGUUUUUUCCCUGUAGUC	chr17:47782487-47782756(-)$1	269	75	115	38.0197

#DB
(((....((((..............))))...)))(((((	chr10:133757344-133757653(+)$1	1	99	139	20.3179
(((((((..........................)))))))	chr11:125893255-125893539(-)$1	1	74	114	35.9260
(((((.(((((...................)).)))..))	chr9:33963654-33963903(-)$1	1	110	150	33.0753
(((((.((((((..................))))).).))	chr3:136141750-136142006(-)$1	1	168	208	32.4654
.((((.((.((((..................)))).))..	chr3:9512028-9512284(+)$1	1	87	127	31.6571
))))..((((((...................))))))...	chr19:33077645-33077897(+)$1	1	124	164	29.7954
((..((.((((..........................)))	chr5:38959257-38959541(-)$1	1	50	90	37.5380
(....((((((.............................	chr20:42836098-42836348(-)$1	1	55	95	38.9784
..(((..(((..((((...............))))..)))	chr4:139101786-139102046(-)$1	1	69	109	21.3168
.....((((((....................))))))...	chr4:129012301-129012614(+)$1	1	159	199	29.3582
((((....(((.......................)))...	chr3:124393592-124393854(+)$1	1	104	144	37.7238
((((..(.(((......................)))...)	chr2:64089859-64090108(+)$1	1	23	63	37.8018
...((..((((...................))))..))..	chr15:78770516-78770790(+)$1	1	51	91	32.1144
(((((((((((.............................	chr4:88116706-88116977(-)$1	1	76	116	38.8136
(..((((((((......................)))))).	chr3:156870805-156871060(-)$1	1	129	169	36.0448
(((((((((((..................))))))((((.	chr16:67863842-67864112(-)$1	1	89	129	26.7834
(((((((((((....................)))))))))	chr17:47696599-47696856(-)$1	1	62	102	35.8950
((..(((((((.............................	chr6:31729729-31730041(+)$1	1	79	119	38.2419
)....((((((.......................))))))	chr20:44076897-44077179(+)$1	1	74	114	32.9090
.....((((((....................))))))...	chr8:124827091-124827383(+)$1	1	187	227	34.1749
(...(((((((.............................	chr7:17838237-17838514(-)$1	1	59	99	38.8431
(((((...(((..................)))...)))))	chr3:11831916-11832171(-)$1	1	85	125	32.8809
(..(.((((((....................)))))).).	chr7:6156307-6156574(+)$1	1	137	177	35.7151
.....((((((.....................))))))..	chr14:21463030-21463306(+)$1	1	160	200	33.7667
.(((.(((.......................))).)))..	chr2:183619619-183619891(+)$1	1	63	103	35.1662
...((((.((((.(((..............))).))))))	chr12:49054211-49054530(-)$1	1	244	284	19.6619
(....((((.(((..................))).)))).	chr20:43567659-43567933(+)$1	1	168	208	33.0754
((((.(..(((((..................)))))..).	chr6:13327023-13327290(-)$1	1	135	175	32.6012
((((...((((.....................))))....	chr14:21678129-21678391(-)$1	1	182	222	36.9252
((((((((........................))))))))	chr4:124322571-124322833(+)$1	1	42	82	30.9729
((((...((((....................))))...))	chr1:146629581-146629819(-)$1	1	128	168	35.5565
.....(((((.((..................)).))))).	chr2:44618811-44619148(+)$1	1	286	326	27.8750
((.((((((((.............................	chr10:5494186-5494483(+)$1	1	70	110	38.3589
(((((((((((.............................	chr12:32859492-32859765(+)$1	1	89	129	38.8136
......(((((........................)))))	chr2:242404971-242405230(+)$1	1	218	258	32.3826
((.....((((.............................	chr1:76198212-76198464(+)$1	1	15	55	38.0424
((.......(((...................))).....)	chr5:38975581-38975837(-)$1	1	67	107	28.6041
....(((..............................)))	chr14:102661159-102661415(+)$1	1	174	214	36.1162
.(((..(((((...................)))))..)))	chr11:9191346-9191598(-)$1	1	116	156	33.8696
(((..((((.......................)))).)))	chr2:190648006-190648253(-)$1	1	130	170	35.9398
)).)).(((((....................)))))..((	chr5:33453285-33453538(+)$1	1	74	114	31.9923
((((((.((((.............................	chr9:134067478-134067739(+)$1	1	60	100	38.7164
(((((.(((((....................))))).)))	chr1:173962121-173962406(-)$1	1	89	129	35.2470
..((((((((..............................	chr10:113914449-113914703(-)$1	1	10	50	38.2468
).))))(((.............................))	chr14:65568148-65568402(-)$1	1	135	175	37.2115
(.(((((.((......................))))))).	chr6:158487745-158488002(+)$1	1	20	60	34.8375
((.((((..((....................))..)))))	chr13:99101700-99101917(+)$1	1	61	101	33.4012
..(((((((((((..................))))))).)	chr17:31271726-31272035(+)$1	1	133	173	32.1552
.(((((.(((.....................)))))))).	chr4:88011014-88011278(+)$1	1	18	58	35.4391
.(((.((.(((...........................))	chr17:47782487-47782756(-)$1	1	75	115	38.0197

#PSSM
e : 0.16	= : 0.10	c : 0.08	d : 0.08	g : 0.06	[ : 0.06	: : 0.06	b : 0.06	f : 0.06	" : 0.04	& : 0.04	% : 0.04	! : 0.04	i : 0.02	E : 0.02	G : 0.02	' : 0.02	h : 0.02	( : 0.02	
e : 0.14	c : 0.10	= : 0.10	d : 0.08	: : 0.08	! : 0.08	g : 0.06	" : 0.06	f : 0.06	# : 0.04	& : 0.04	% : 0.04	i : 0.02	E : 0.02	h : 0.02	b : 0.02	] : 0.02	[ : 0.02	
e : 0.16	c : 0.12	d : 0.12	! : 0.08	: : 0.08	= : 0.08	& : 0.06	g : 0.04	# : 0.04	" : 0.04	% : 0.04	[ : 0.04	E : 0.02	f : 0.02	h : 0.02	$ : 0.02	] : 0.02	
e : 0.16	d : 0.16	c : 0.08	: : 0.08	b : 0.08	= : 0.08	# : 0.06	! : 0.06	g : 0.04	& : 0.04	% : 0.04	E : 0.02	" : 0.02	a : 0.02	f : 0.02	h : 0.02	$ : 0.02	
d : 0.12	b : 0.12	e : 0.10	: : 0.10	# : 0.08	= : 0.08	[ : 0.08	g : 0.06	! : 0.06	c : 0.04	& : 0.04	" : 0.04	E : 0.02	% : 0.02	h : 0.02	$ : 0.02	
f : 0.18	d : 0.14	[ : 0.08	! : 0.08	= : 0.08	: : 0.06	b : 0.06	" : 0.06	e : 0.06	# : 0.04	g : 0.04	c : 0.04	a : 0.02	h : 0.02	$ : 0.02	& : 0.02	
f : 0.19	e : 0.14	d : 0.10	c : 0.08	g : 0.06	[ : 0.06	! : 0.06	= : 0.06	" : 0.06	# : 0.04	a : 0.04	b : 0.04	h : 0.02	$ : 0.02	& : 0.02	
d : 0.19	f : 0.19	e : 0.14	c : 0.10	[ : 0.08	= : 0.06	^ : 0.04	g : 0.04	! : 0.04	b : 0.02	# : 0.02	" : 0.02	h : 0.02	& : 0.02	
d : 0.21	f : 0.19	c : 0.16	e : 0.16	^ : 0.08	= : 0.06	g : 0.04	[ : 0.02	& : 0.02	b : 0.02	! : 0.02	
d : 0.19	f : 0.19	e : 0.16	c : 0.14	^ : 0.12	b : 0.06	= : 0.06	g : 0.04	[ : 0.02	
f : 0.19	d : 0.18	^ : 0.18	e : 0.14	c : 0.12	= : 0.06	b : 0.04	g : 0.04	! : 0.02	[ : 0.02	
^ : 0.78	e : 0.04	d : 0.04	c : 0.04	w : 0.02	f : 0.02	! : 0.02	b : 0.02	g : 0.02	
^ : 0.84	d : 0.04	w : 0.02	[ : 0.02	c : 0.02	e : 0.02	b : 0.02	g : 0.02	
^ : 0.94	w : 0.02	d : 0.02	c : 0.02	
^ : 0.94	w : 0.02	d : 0.02	c : 0.02	
^ : 0.94	w : 0.02	d : 0.02	c : 0.02	
^ : 0.94	w : 0.04	x : 0.02	
^ : 0.94	w : 0.04	x : 0.02	
^ : 0.94	w : 0.04	x : 0.02	
^ : 0.94	w : 0.04	x : 0.02	
^ : 0.94	w : 0.04	x : 0.02	
^ : 0.94	w : 0.04	x : 0.02	
^ : 0.94	w : 0.04	x : 0.02	
^ : 0.94	w : 0.04	x : 0.02	
^ : 0.94	w : 0.04	x : 0.02	
^ : 0.94	d : 0.02	x : 0.02	w : 0.02	
^ : 0.94	d : 0.02	x : 0.02	w : 0.02	
^ : 0.94	d : 0.02	x : 0.02	w : 0.02	
^ : 0.94	d : 0.02	x : 0.02	w : 0.02	
^ : 0.90	3 : 0.02	x : 0.02	f : 0.02	c : 0.02	w : 0.02	
^ : 0.82	e : 0.04	c : 0.04	3 : 0.02	b : 0.02	x : 0.02	d : 0.02	f : 0.02	
^ : 0.48	c : 0.12	e : 0.10	f : 0.10	d : 0.08	b : 0.06	3 : 0.02	= : 0.02	g : 0.02	
^ : 0.38	c : 0.12	d : 0.12	f : 0.12	e : 0.10	b : 0.06	] : 0.02	= : 0.02	3 : 0.02	h : 0.02	g : 0.02	
^ : 0.32	c : 0.14	f : 0.14	d : 0.12	e : 0.10	g : 0.04	] : 0.04	= : 0.02	3 : 0.02	h : 0.02	b : 0.02	2 : 0.02	
^ : 0.27	e : 0.16	f : 0.16	d : 0.12	c : 0.08	g : 0.04	2 : 0.04	] : 0.04	= : 0.02	3 : 0.02	h : 0.02	5 : 0.02	
^ : 0.25	e : 0.16	f : 0.14	d : 0.12	c : 0.08	g : 0.06	2 : 0.06	] : 0.04	= : 0.02	h : 0.02	3 : 0.02	5 : 0.02	
^ : 0.25	f : 0.14	e : 0.10	2 : 0.08	d : 0.08	g : 0.06	b : 0.04	c : 0.04	3 : 0.04	] : 0.04	a : 0.02	= : 0.02	4 : 0.02	h : 0.02	5 : 0.02	: : 0.02	
^ : 0.21	d : 0.10	c : 0.10	e : 0.10	g : 0.08	3 : 0.08	: : 0.06	f : 0.06	2 : 0.04	] : 0.04	b : 0.04	= : 0.02	4 : 0.02	h : 0.02	5 : 0.02	
^ : 0.18	e : 0.14	d : 0.12	c : 0.12	3 : 0.08	g : 0.06	: : 0.04	f : 0.04	a : 0.04	2 : 0.02	= : 0.02	8 : 0.02	6 : 0.02	4 : 0.02	h : 0.02	5 : 0.02	b : 0.02	] : 0.02	
^ : 0.18	c : 0.12	d : 0.10	e : 0.08	g : 0.06	3 : 0.06	: : 0.06	] : 0.06	2 : 0.04	6 : 0.04	b : 0.04	a : 0.02	> : 0.02	m : 0.02	= : 0.02	f : 0.02	8 : 0.02	4 : 0.02	h : 0.02	

#score	1691.367495322145
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_transcript_m1_run2.txt

#BEAR
dccc[a[ccc"""ffffffnnnnnffffffccc]a]ccc]	chr9:117052403-117052629(+)$1	226	95	135	11.7657
####dddd!!a[ffffffooooooffffffa]dddd333b	chr19:953968-954235(+)$1	267	64	104	15.4501
b[ccc[===========mmmm===========]ccc]bb]	chr9:117053029-117053295(+)$1	266	38	78	12.5438
:dddd[dddd[gggggggooooooggggggg]dddd22dd	chr16:24741099-24741334(+)$1	235	40	80	13.3284
[bb####bb[ccc!!fffffflllffffff4444ccc]bb	chr3:133292599-133292903(+)$1	304	221	261	12.0974
ccccc=============nnnnn=============22cc	chr19:14201101-14201392(-)$1	291	190	230	14.9040
ddd[bb!!ccc[ccccccooooooccc333ccc]ccc333	chr21:47563089-47563361(-)$1	272	42	82	16.3981
!!bb[a[bb[bb[eeeeeooooooeeeee]bb]bb]a]bb	chr6:149638899-149639149(+)$1	250	25	65	12.7668
!=============uuuuuuuuuuuu=============c	chr11:2152347-2152557(-)$1	210	115	155	12.4919
!!ccc!!a[ccc[eeeeellleeeeeccc]a22ccc4444	chr10:120802086-120802385(-)$1	299	205	245	12.3088
iiiiiiiii[ccc"""bb[bbmmmmbb]bb333ccc22ii	chr12:121416352-121416650(+)$1	298	154	194	11.3381
ff[iiiiiiiiiccc[bboooooobb]ccc4444iiiiii	chr19:1941219-1941511(+)$1	292	141	181	16.3190
a!!a!!a[dddd!!cccooooooccc22dddd]a]a22a]	chr1:193091215-193091490(+)$1	275	76	116	14.4631
fffffbb!!bb[bb[cccooooooccc]bb]bb22bb]ff	chr16:22385523-22385861(-)$1	338	81	121	12.8361
dddd==========[cccooooooccc==========HHH	chr9:35731968-35732270(-)$1	302	236	276	15.4744
gggggg[ccc[cccvvvvvvvvvvvvvccc333cccgggg	chr22:36687931-36688167(-)$1	236	158	198	12.6343
gggggg$$$$$cccddddoooooodddd]cccggggggg:	chr16:89894962-89895338(+)$1	376	83	123	12.6961
:bb[eeeee"""ffffffooooooffffff22eeeee]bb	chr17:19015775-19016049(-)$1	274	8	48	13.2808
bb[dddd[ccc"""ddddoooooodddd22cccdddd]bb	chr19:1941104-1941385(+)$1	281	196	236	12.6422
"dddd"""dddd"""fffffflllffffff333dddd333	chr12:132401678-132401926(+)$1	248	121	161	12.2812
!!ggggggg!!dddd[bboooooobbdddd]gggggggee	chr17:79958135-79958434(+)$1	299	15	55	13.9314
ggggg!!eeeee####bboooooobb]eeeee333ggggg	chr2:240322454-240322759(-)$1	305	203	243	14.8050
dddd[bb!!eeeee[cccooooooccc]eeeee]bb22dd	chr20:57466548-57466895(+)$1	347	115	155	14.0573
cc!!bb"""dddd[cccaooooooa]ccc22dddd333bb	chr16:18480497-18480760(-)$1	263	154	194	15.1167
bb!!iiiiiiiii[a[bboooooobb]aiiiiiiiii]bb	chr12:133067023-133067339(+)$1	316	20	60	16.0095
======[bbgggggggssssssssssggggggg]bb22==	chr2:232327856-232328127(-)$1	271	54	94	12.5090
eeeeeabb[bb[ffffffooooooffffff]bb]bb]a44	chr12:9258794-9259025(-)$1	231	83	123	13.8297
[eeeee[eeeee!!bbbboooooobb]bb22eeeee22ee	chr16:58059579-58059999(+)$1	420	97	137	12.7249
bb:ggggggg[gggggggooooooggggggg]gggggggG	chr11:638041-638312(+)$1	271	152	192	13.7516
iiiibb!!ccc[a[cccnnnnnccc]a]ccc333bb22ii	chr16:591181-591566(+)$1	385	223	263	13.1848
[dddd[dddd[gggggggooooooggggggg]dddd22dd	chr16:24741076-24741299(+)$1	223	63	103	14.3439
"""ccc####a[ffffffmmmmffffff]accc]ccc]dd	chr2:232325088-232325357(-)$1	269	12	52	11.8130
eeeeeabb[bb[ffffffooooooffffff]bb]bb]a44	chr12:9258768-9258978(-)$1	210	36	76	13.8297
ggggggg!!ccc"""cccqqqqqqqqccc333cccggggg	chr14:53162292-53162577(-)$1	285	30	70	12.3299
[iiiiiiiii!!fffffflllffffff]iiiiiiiii]aa	chr16:447206-447460(+)$1	254	19	59	13.1884
!!bb"""bb!!bb$$$$$cccooooooccc4444bb22bb	chr1:31904919-31905175(+)$1	256	27	67	11.3459
c!!eeeee!!a!!ddddoooooodddd22a333eeeeecc	chr16:75032856-75033164(+)$1	308	146	186	13.1344
bbccc!!a!!ffffff[ammmma]ffffff22a22ccc33	chr17:80186815-80187083(+)$1	268	28	68	11.3623
eee]bbccc!!gggggggooooooggggggg22cccHHHH	chr6:90367886-90368190(-)$1	304	76	116	12.0246
ffffeeeee[ccc!!cccoooooocccccceeeee22fff	chr1:93307233-93307511(+)$1	278	81	121	13.7928
##============ssssssssss============333h	chr22:41488333-41488591(+)$1	258	191	231	14.2872
=========[a####cccqqqqqqqqccc22a]=======	chr20:42086703-42086923(+)$1	220	163	203	13.0839
b[a[===========cccrrrrrrrrrccc]=========	chr20:42086679-42086903(+)$1	224	102	142	15.0953
fffff"""ccc[ffffffooooooffffff333ccc22ff	chr17:18965257-18965550(+)$1	293	48	88	16.9627
""ccc"""dddd!!cccooooooccc22dddd4444ccc3	chr18:60382867-60383187(+)$1	320	36	76	14.3109
iiiiiii[bb!!bb[cccooooooccc]bb22bb]iiiii	chr20:25371096-25371506(-)$1	410	183	223	15.1170
fff[ggggggg!!eeeeeooooooeeeeegggggggffff	chr17:80186900-80187123(+)$1	223	101	141	13.7082
ddd[ccc####a"""cccnnnnnccc22a4444ccc]ddd	chr19:3062203-3062528(-)$1	325	161	201	12.6670
eee[ccc[ccc[eeeeeooooooeeeee]ccc]ccceeee	chr10:12071291-12071623(-)$1	332	73	113	12.8735
d[ccc[bbccc[ccc[bbnnnnnbbccc]ccc22bb]ccc	chr2:11484087-11484356(-)$1	269	204	244	11.4303
b[ccc[eeeeecccrrrrrrrrrccc]eeeee]ccc22bb	chr11:2152132-2152335(-)$1	203	138	178	11.5506
!=============uuuuuuuuuuuu=============c	chr11:2152357-2152565(-)$1	208	123	163	12.4919

#otherMatches

#Seq PSSM
CCCAGGGCCUGCAGGGGCUGCCAGGGCCCCGGGGCGUGGU	chr9:117052403-117052629(+)$1	226	95	135	11.7657
gacagagcgagacccugucccuaaauagggcagcucaagg	chr19:953968-954235(+)$1	267	64	104	15.4501
CCUCUGCCUGCUUUCUUAACAGGGGGAGCAGGGAGACGAU	chr9:117053029-117053295(+)$1	266	38	78	12.5438
ACUUGCUCGUGCACUUUACACACAUGAGGUGAGCGGAACA	chr16:24741099-24741334(+)$1	235	40	80	13.3284
CGAGCUCGGAgccccgcgggccgcgcccgccgccggcccc	chr3:133292599-133292903(+)$1	304	221	261	12.0974
GAGACGGCGGCGGCCGCCACCACGGCGGCCGCCGCCUCGU	chr19:14201101-14201392(-)$1	291	190	230	14.9040
cuggcuggcuugccgcccacaagagggagauggggagggg	chr21:47563089-47563361(-)$1	272	42	82	16.3981
ggcggcggcggcggccggagggaguuggcggcggcgggcg	chr6:149638899-149639149(+)$1	250	25	65	12.7668
UUUGGGAUACACCCGUAGGGUGGGCGGGGUGUGUCCCAGG	chr11:2152347-2152557(-)$1	210	115	155	12.4919
GACCAGACGAUGAUCGGGUUCCCCGGCGUGGCAUGGAUGA	chr10:120802086-120802385(-)$1	299	205	245	12.3088
CCACGCGGUGGGGGAGGCGGCUAGCGUGGUGGACCCGGGC	chr12:121416352-121416650(+)$1	298	154	194	11.3381
UGAGGCCGGGCCGGCCGCCCAGACGCUGCCCGCGGGCCCG	chr19:1941219-1941511(+)$1	292	141	181	16.3190
cggcggcgccccgagccggcggAGGCGAGGGGGGGGAAGA	chr1:193091215-193091490(+)$1	275	76	116	14.4631
GGGGCUGAGGCGGCGCAGCGGAGUCUGGGCGGCGGCGCGU	chr16:22385523-22385861(-)$1	338	81	121	12.8361
ggccgcggggccuggccccggggcgggcgggccCUGCCUC	chr9:35731968-35732270(-)$1	302	236	276	15.4744
CUUUGCAUUUCCUCUCCUUCAAGCACUGAGUCCAAAGCAA	chr22:36687931-36688167(-)$1	236	158	198	12.6343
GCCUACGAGCAGCCGCUCAACGAGGAGCAGGCGUGGGCCG	chr16:89894962-89895338(+)$1	376	83	123	12.6961
CCUAAUGGCAUCGGAACUAGCGAAAGUUUCUCGCCAUCAG	chr17:19015775-19016049(-)$1	274	8	48	13.2808
gcaccggagccggagcgcgagggggcgcggggcccggagc	chr19:1941104-1941385(+)$1	281	196	236	12.6422
gcugugggacgggggucgggUUCGGCUCGGAGGCUGUGGG	chr12:132401678-132401926(+)$1	248	121	161	12.2812
AGUAGUGCCCGCCCGUGCUCGCCCGUCGGGAGGCGCUGUU	chr17:79958135-79958434(+)$1	299	15	55	13.9314
cgccgccgcccgaacagccucccagccugggcccccggcg	chr2:240322454-240322759(-)$1	305	203	243	14.8050
gccgagcccgcgcccggcccgcccgcccggcgcugccccg	chr20:57466548-57466895(+)$1	347	115	155	14.0573
GGCACCAUCUCCUACAGCUGGACUGCCUGGAGGGACAGGG	chr16:18480497-18480760(-)$1	263	154	194	15.1167
gcccgcgcggcgcacacucagcccggcGGCGCCGCGUAGC	chr12:133067023-133067339(+)$1	316	20	60	16.0095
GAAAUGUCGAGGUGGAGGUGUAAUGAUCUAUUUGUGUCCA	chr2:232327856-232328127(-)$1	271	54	94	12.5090
GUGGUGGAAUUGACUGGAAGGCAGUCCAGUGAAAUCACAA	chr12:9258794-9259025(-)$1	231	83	123	13.8297
CGGAGCCGCGCUGAACUCGCCGGGGACGUCGGGcgcccgc	chr16:58059579-58059999(+)$1	420	97	137	12.7249
CCACACCAGGUCUGGCCCUCGAGUGGGUCGGCCUUGGUGC	chr11:638041-638312(+)$1	271	152	192	13.7516
GUCUGCGAGUUACCCUGAUGGACAGAGAGACGCGGCAAAG	chr16:591181-591566(+)$1	385	223	263	13.1848
ACUUGCUCGUGCACUUUACACACAUGAGGUGAGCGGAACA	chr16:24741076-24741299(+)$1	223	63	103	14.3439
UAUGUUUAAAGGAGGCACUUAAGUGUUUGUGGCUACUGAU	chr2:232325088-232325357(-)$1	269	12	52	11.8130
GUGGUGGAAUUGACUGGAAGGCAGUCCAGUGAAAUCACAA	chr12:9258768-9258978(-)$1	210	36	76	13.8297
CGUCUCCAggccgggggcgucagggagccgggggcgggga	chr14:53162292-53162577(-)$1	285	30	70	12.3299
GGCGGCCUCUUCUGGCGCUCCGCGCUGCGGGGGCUGCGCU	chr16:447206-447460(+)$1	254	19	59	13.1884
gacaggguggauagggugguuaggguggauaggguggaca	chr1:31904919-31905175(+)$1	256	27	67	11.3459
gcugaagcgagagcgcgacgcgacgcgaccgcggcUUCCC	chr16:75032856-75033164(+)$1	308	146	186	13.1344
GCGGUGACGUGCGCGGGGGACGUGCCGCGCCAGCGACCCG	chr17:80186815-80187083(+)$1	268	28	68	11.3623
GCUGUGUUUGAUUUCUCUGCCGAAGGAGGAAGAAGAACGG	chr6:90367886-90368190(-)$1	304	76	116	12.0246
UUUUGUAGGUGGAACCGUCCCAAAAUGUCCCUUGCUCAGA	chr1:93307233-93307511(+)$1	278	81	121	13.7928
CCGGGAGGAGGUGAGUGUCUCUUGUCGCCUCCUCCUCUCC	chr22:41488333-41488591(+)$1	258	191	231	14.2872
GCGCCGCGUGGCAGGGCCUCAAAGAUGGCGACGGCGCGGC	chr20:42086703-42086923(+)$1	220	163	203	13.0839
UGAGUCGGGCCUGGGCGCCCGCGCCCAGCGUCCCAGGCCU	chr20:42086679-42086903(+)$1	224	102	142	15.0953
ggaagagagguagcguuuucuccugagcgugaagccggcu	chr17:18965257-18965550(+)$1	293	48	88	16.9627
AAGCCCCACUGCAAUGGAGCCCGCCGCCGCGGCCACGGUA	chr18:60382867-60383187(+)$1	320	36	76	14.3109
AGCCCGUCGCCUUGGAGCAUGAGCGCUGCGCCGCCGCGGG	chr20:25371096-25371506(-)$1	410	183	223	15.1170
UCGCGCGCGGGCCGGGGCCCAGGAGCUCCCCCGUGCCGGG	chr17:80186900-80187123(+)$1	223	101	141	13.7082
cgcgcggggagggggcgcaggaagcgggcgaggccgggcg	chr19:3062203-3062528(-)$1	325	161	201	12.6670
UUUAUUUAUUUGUUUGUUUUUAUAUAGAGAAAAAGAAGAA	chr10:12071291-12071623(-)$1	332	73	113	12.8735
UCGCUCCCCCAUCAACGUGGAGAGCUUGCUGGUAGGUGGC	chr2:11484087-11484356(-)$1	269	204	244	11.4303
CCCCACGAGUAGCCUGACUCCCUGGUGUGCUCCUGGAAGG	chr11:2152132-2152335(-)$1	203	138	178	11.5506
UUUGGGAUACACCCGUAGGGUGGGCGGGGUGUGUCCCAGG	chr11:2152357-2152565(-)$1	208	123	163	12.4919

#DB
((((.(.(((...((((((.....))))))))).).))).	chr9:117052403-117052629(+)$1	1	95	135	11.7657
....((((..(.((((((......))))))).))))...)	chr19:953968-954235(+)$1	1	64	104	15.4501
(.(((.(((((((((((....))))))))))).))).)).	chr9:117053029-117053295(+)$1	1	38	78	12.5438
.((((.((((.(((((((......))))))).))))..))	chr16:24741099-24741334(+)$1	1	40	80	13.3284
.((....((.(((..((((((...))))))....))).))	chr3:133292599-133292903(+)$1	1	221	261	12.0974
((((((((((((((((((.....)))))))))))))..))	chr19:14201101-14201392(-)$1	1	190	230	14.9040
(((.((..(((.((((((......)))...))).)))...	chr21:47563089-47563361(-)$1	1	42	82	16.3981
..((.(.((.((.(((((......))))).)).)).).))	chr6:149638899-149639149(+)$1	1	25	65	12.7668
.(((((((((((((............))))))))))))))	chr11:2152347-2152557(-)$1	1	115	155	12.4919
..(((..(.(((.(((((...)))))))).)..)))....	chr10:120802086-120802385(-)$1	1	205	245	12.3088
(((((((((.(((...((.((....)).))...)))..))	chr12:121416352-121416650(+)$1	1	154	194	11.3381
((.((((((((((((.((......)).)))....))))))	chr19:1941219-1941511(+)$1	1	141	181	16.3190
(..(..(.((((..(((......)))..)))).).)..).	chr1:193091215-193091490(+)$1	1	76	116	14.4631
(((((((..((.((.(((......))).)).))..)).))	chr16:22385523-22385861(-)$1	1	81	121	12.8361
))))((((((((((.(((......))))))))))))))))	chr9:35731968-35732270(-)$1	1	236	276	15.4744
((((((.(((.(((.............)))...)))))))	chr22:36687931-36688167(-)$1	1	158	198	12.6343
((((((.....(((((((......)))).)))))))))).	chr16:89894962-89895338(+)$1	1	83	123	12.6961
.((.(((((...((((((......))))))..))))).))	chr17:19015775-19016049(-)$1	1	8	48	13.2808
((.((((.(((...((((......))))..))))))).))	chr19:1941104-1941385(+)$1	1	196	236	12.6422
.((((...((((...((((((...))))))...))))...	chr12:132401678-132401926(+)$1	1	121	161	12.2812
..(((((((..((((.((......)))))).)))))))))	chr17:79958135-79958434(+)$1	1	15	55	13.9314
(((((..(((((....((......)).)))))...)))))	chr2:240322454-240322759(-)$1	1	203	243	14.8050
((((.((..(((((.(((......))).))))).))..))	chr20:57466548-57466895(+)$1	1	115	155	14.0573
((..((...((((.((((......).)))..))))...))	chr16:18480497-18480760(-)$1	1	154	194	15.1167
((..(((((((((.(.((......)).)))))))))).))	chr12:133067023-133067339(+)$1	1	20	60	16.0095
((((((.(((((((((..........))))))).))..))	chr2:232327856-232328127(-)$1	1	54	94	12.5090
((((((((.((.((((((......)))))).)).)).)..	chr12:9258794-9259025(-)$1	1	83	123	13.8297
.(((((.(((((..((((......)).))..)))))..))	chr16:58059579-58059999(+)$1	1	97	137	12.7249
)).(((((((.(((((((......))))))).))))))))	chr11:638041-638312(+)$1	1	152	192	13.7516
((((((..(((.(.(((.....))).).)))...))..))	chr16:591181-591566(+)$1	1	223	263	13.1848
.((((.((((.(((((((......))))))).))))..))	chr16:24741076-24741299(+)$1	1	63	103	14.3439
...(((....(.((((((....)))))).)))).))).))	chr2:232325088-232325357(-)$1	1	12	52	11.8130
((((((((.((.((((((......)))))).)).)).)..	chr12:9258768-9258978(-)$1	1	36	76	13.8297
(((((((..(((...(((........)))...))))))))	chr14:53162292-53162577(-)$1	1	30	70	12.3299
.(((((((((..((((((...)))))).))))))))).))	chr16:447206-447460(+)$1	1	19	59	13.1884
..((...((..((.....(((......)))....))..))	chr1:31904919-31905175(+)$1	1	27	67	11.3459
(..(((((..(..((((......))))..)...)))))))	chr16:75032856-75033164(+)$1	1	146	186	13.1344
(((((..(..((((((.(....).))))))..)..)))..	chr17:80186815-80187083(+)$1	1	28	68	11.3623
))).))(((..(((((((......)))))))..)))((((	chr6:90367886-90368190(-)$1	1	76	116	12.0246
(((((((((.(((..(((......)))))))))))..)))	chr1:93307233-93307511(+)$1	1	81	121	13.7928
..((((((((((((..........))))))))))))...)	chr22:41488333-41488591(+)$1	1	191	231	14.2872
(((((((((.(....(((........)))..).)))))))	chr20:42086703-42086923(+)$1	1	163	203	13.0839
(.(.((((((((((((((.........))).)))))))))	chr20:42086679-42086903(+)$1	1	102	142	15.0953
(((((...(((.((((((......))))))...)))..))	chr17:18965257-18965550(+)$1	1	48	88	16.9627
..(((...((((..(((......)))..))))....))).	chr18:60382867-60383187(+)$1	1	36	76	14.3109
(((((((.((..((.(((......))).))..)).)))))	chr20:25371096-25371506(-)$1	1	183	223	15.1170
(((.(((((((..(((((......))))))))))))))))	chr17:80186900-80187123(+)$1	1	101	141	13.7082
(((.(((....(...(((.....)))..)....))).)))	chr19:3062203-3062528(-)$1	1	161	201	12.6670
(((.(((.(((.(((((......))))).))).)))))))	chr10:12071291-12071623(-)$1	1	73	113	12.8735
(.(((.(((((.(((.((.....))))).)))..)).)))	chr2:11484087-11484356(-)$1	1	204	244	11.4303
(.(((.((((((((.........))).))))).)))..))	chr11:2152132-2152335(-)$1	1	138	178	11.5506
.(((((((((((((............))))))))))))))	chr11:2152357-2152565(-)$1	1	123	163	12.4919

#PSSM
b : 0.13	d : 0.11	! : 0.11	f : 0.09	[ : 0.07	g : 0.07	e : 0.07	c : 0.05	i : 0.05	" : 0.05	# : 0.03	: : 0.03	= : 0.03	a : 0.01	
d : 0.13	b : 0.11	! : 0.11	f : 0.09	e : 0.09	[ : 0.07	= : 0.07	i : 0.07	g : 0.07	c : 0.05	# : 0.03	" : 0.03	
c : 0.15	d : 0.13	= : 0.09	g : 0.09	e : 0.09	b : 0.07	i : 0.07	! : 0.07	f : 0.07	[ : 0.03	# : 0.01	: : 0.01	" : 0.01	a : 0.01	
c : 0.17	d : 0.11	[ : 0.11	g : 0.11	= : 0.09	i : 0.09	e : 0.07	f : 0.05	# : 0.03	b : 0.03	! : 0.03	a : 0.01	] : 0.01	
c : 0.19	= : 0.13	g : 0.13	e : 0.11	d : 0.09	i : 0.09	b : 0.07	[ : 0.05	f : 0.03	# : 0.01	! : 0.01	" : 0.01	
= : 0.15	b : 0.11	g : 0.11	[ : 0.09	i : 0.09	a : 0.07	! : 0.07	e : 0.07	" : 0.07	c : 0.05	d : 0.03	# : 0.01	
= : 0.15	[ : 0.09	! : 0.09	i : 0.09	b : 0.09	" : 0.09	d : 0.07	e : 0.07	g : 0.07	c : 0.05	# : 0.03	a : 0.01	$ : 0.01	
= : 0.15	b : 0.13	e : 0.11	! : 0.09	i : 0.07	[ : 0.07	" : 0.07	c : 0.05	d : 0.05	g : 0.05	a : 0.03	# : 0.03	$ : 0.01	
c : 0.17	= : 0.15	! : 0.11	d : 0.09	b : 0.09	e : 0.09	i : 0.07	[ : 0.05	g : 0.05	# : 0.03	$ : 0.01	" : 0.01	
c : 0.19	= : 0.13	! : 0.11	d : 0.11	[ : 0.09	b : 0.07	e : 0.07	i : 0.05	g : 0.05	# : 0.03	$ : 0.01	" : 0.01	
c : 0.21	= : 0.13	! : 0.09	a : 0.07	[ : 0.07	b : 0.07	d : 0.07	e : 0.07	" : 0.03	i : 0.03	g : 0.03	$ : 0.01	f : 0.01	# : 0.01	
[ : 0.19	c : 0.15	= : 0.13	g : 0.09	d : 0.09	! : 0.07	" : 0.05	e : 0.05	b : 0.03	i : 0.03	f : 0.01	# : 0.01	a : 0.01	
c : 0.17	f : 0.15	= : 0.13	" : 0.09	g : 0.09	! : 0.09	b : 0.05	[ : 0.03	d : 0.03	# : 0.03	e : 0.03	i : 0.01	a : 0.01	
f : 0.17	= : 0.13	c : 0.11	g : 0.09	! : 0.09	e : 0.09	" : 0.09	[ : 0.05	b : 0.03	d : 0.03	# : 0.03	$ : 0.01	
f : 0.17	c : 0.13	g : 0.09	e : 0.07	" : 0.07	[ : 0.07	d : 0.07	= : 0.05	! : 0.03	u : 0.03	# : 0.03	v : 0.01	a : 0.01	b : 0.01	$ : 0.01	s : 0.01	r : 0.01	
c : 0.26	f : 0.21	g : 0.09	e : 0.07	[ : 0.07	d : 0.05	= : 0.03	u : 0.03	" : 0.01	v : 0.01	# : 0.01	b : 0.01	$ : 0.01	s : 0.01	r : 0.01	
c : 0.26	f : 0.19	b : 0.13	g : 0.07	e : 0.07	d : 0.05	= : 0.03	u : 0.03	s : 0.03	v : 0.01	$ : 0.01	[ : 0.01	r : 0.01	
f : 0.19	c : 0.19	b : 0.13	g : 0.07	o : 0.07	e : 0.05	u : 0.03	d : 0.03	a : 0.03	s : 0.03	m : 0.01	= : 0.01	v : 0.01	n : 0.01	$ : 0.01	r : 0.01	
o : 0.55	n : 0.07	f : 0.05	m : 0.05	u : 0.03	l : 0.03	s : 0.03	q : 0.03	r : 0.03	[ : 0.01	v : 0.01	c : 0.01	
o : 0.55	n : 0.09	m : 0.05	f : 0.03	u : 0.03	l : 0.03	s : 0.03	q : 0.03	r : 0.03	b : 0.01	v : 0.01	c : 0.01	
o : 0.55	n : 0.09	m : 0.05	f : 0.03	u : 0.03	l : 0.03	s : 0.03	q : 0.03	r : 0.03	b : 0.01	v : 0.01	c : 0.01	
o : 0.57	n : 0.09	m : 0.05	l : 0.03	u : 0.03	s : 0.03	q : 0.03	r : 0.03	= : 0.01	e : 0.01	v : 0.01	f : 0.01	
o : 0.57	n : 0.07	l : 0.03	u : 0.03	s : 0.03	f : 0.03	q : 0.03	r : 0.03	= : 0.01	e : 0.01	m : 0.01	v : 0.01	c : 0.01	a : 0.01	
o : 0.49	c : 0.09	= : 0.03	l : 0.03	u : 0.03	e : 0.03	s : 0.03	f : 0.03	q : 0.03	n : 0.01	m : 0.01	v : 0.01	d : 0.01	] : 0.01	r : 0.01	b : 0.01	
f : 0.21	c : 0.21	b : 0.11	g : 0.07	e : 0.07	= : 0.05	d : 0.05	u : 0.03	q : 0.03	m : 0.01	v : 0.01	a : 0.01	s : 0.01	o : 0.01	r : 0.01	
f : 0.21	c : 0.21	b : 0.11	g : 0.07	e : 0.07	= : 0.05	d : 0.05	u : 0.03	] : 0.03	q : 0.03	v : 0.01	s : 0.01	o : 0.01	r : 0.01	
f : 0.21	c : 0.21	= : 0.09	g : 0.09	] : 0.09	d : 0.07	e : 0.05	2 : 0.05	b : 0.01	v : 0.01	a : 0.01	o : 0.01	r : 0.01	
f : 0.19	c : 0.19	= : 0.11	] : 0.11	g : 0.09	e : 0.09	2 : 0.07	d : 0.05	3 : 0.01	a : 0.01	b : 0.01	
c : 0.19	f : 0.17	= : 0.11	g : 0.09	e : 0.09	b : 0.07	] : 0.07	d : 0.05	2 : 0.03	i : 0.03	3 : 0.01	a : 0.01	
f : 0.17	c : 0.17	= : 0.11	g : 0.11	2 : 0.07	b : 0.05	d : 0.05	e : 0.05	3 : 0.03	] : 0.03	i : 0.03	a : 0.03	4 : 0.01	
c : 0.15	= : 0.11	g : 0.11	3 : 0.11	2 : 0.11	] : 0.09	4 : 0.07	e : 0.07	a : 0.03	d : 0.03	i : 0.03	b : 0.01	
c : 0.13	= : 0.13	3 : 0.13	2 : 0.09	e : 0.09	] : 0.07	4 : 0.07	b : 0.07	d : 0.05	g : 0.05	i : 0.03	a : 0.01	
3 : 0.13	] : 0.11	= : 0.11	c : 0.09	4 : 0.09	g : 0.09	d : 0.07	b : 0.07	e : 0.07	2 : 0.05	i : 0.03	a : 0.01	
c : 0.19	] : 0.13	= : 0.13	d : 0.11	4 : 0.07	g : 0.07	e : 0.07	2 : 0.05	b : 0.03	3 : 0.03	i : 0.03	a : 0.01	
c : 0.24	b : 0.15	= : 0.13	d : 0.11	g : 0.07	e : 0.07	i : 0.05	] : 0.03	2 : 0.03	a : 0.01	3 : 0.01	4 : 0.01	
c : 0.24	b : 0.15	= : 0.13	g : 0.11	d : 0.09	i : 0.07	e : 0.05	] : 0.03	a : 0.01	3 : 0.01	2 : 0.01	4 : 0.01	
2 : 0.24	c : 0.11	g : 0.11	] : 0.09	= : 0.09	i : 0.07	3 : 0.05	e : 0.05	d : 0.03	a : 0.01	4 : 0.01	b : 0.01	H : 0.01	f : 0.01	
2 : 0.23	] : 0.15	g : 0.11	3 : 0.09	c : 0.07	= : 0.07	i : 0.03	H : 0.03	a : 0.03	e : 0.03	f : 0.03	b : 0.01	4 : 0.01	d : 0.01	
b : 0.17	c : 0.09	3 : 0.09	d : 0.09	= : 0.09	g : 0.09	i : 0.07	f : 0.07	4 : 0.05	e : 0.05	a : 0.03	H : 0.03	
b : 0.17	d : 0.09	c : 0.09	3 : 0.07	i : 0.07	f : 0.07	] : 0.05	4 : 0.05	g : 0.05	e : 0.05	= : 0.05	H : 0.03	: : 0.01	G : 0.01	a : 0.01	h : 0.01	

#score	698.6860871509115
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF036IYW_NSUN2_UTR_m2_run2.txt

#BEAR
::::ggggggg[cccmmmmccc333ggggggg::H	chr19:4724531-4724758(-)$1	227	156	191	28.3774
::::ggggggg[cccmmmmccc333ggggggg:::	chr19:4724562-4724772(-)$1	210	170	205	27.8555
::::ggggggg[cccmmmmccc333ggggggg::H	chr19:4724558-4724762(-)$1	204	160	195	28.3774

#otherMatches

#Seq PSSM
CACCGAAAGAACGAUUCUAGUCCCAUUCUUUCUCU	chr19:4724531-4724758(-)$1	227	156	191	28.3774
CACCGAAAGAACGAUUCUAGUCCCAUUCUUUCUCU	chr19:4724562-4724772(-)$1	210	170	205	27.8555
CACCGAAAGAACGAUUCUAGUCCCAUUCUUUCUCU	chr19:4724558-4724762(-)$1	204	160	195	28.3774

#DB
....(((((((.(((....)))...)))))))..)	chr19:4724531-4724758(-)$1	1	156	191	28.3774
....(((((((.(((....)))...)))))))...	chr19:4724562-4724772(-)$1	1	170	205	27.8555
....(((((((.(((....)))...)))))))..)	chr19:4724558-4724762(-)$1	1	160	195	28.3774

#PSSM
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
[ : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
3 : 1.00	
3 : 1.00	
3 : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
g : 1.00	
: : 1.00	
: : 1.00	
H : 0.66	: : 0.33	

#score	84.61045180339997
#seq	3
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_UTR_m2_run1.txt

#BEAR
BB::gggggggvvvvvvvvvvvvvggggggg	chrX:133930864-133931140(-)$1	276	12	43	22.1460
ccc:gggggggwwwwwwwwwwwwwwgggggg	chr6:117996596-117996882(+)$1	286	48	79	23.3455
h[a[cccyyyyyyyyyyyyyyyycccahhhh	chr14:32546302-32546551(+)$1	249	40	71	22.0849
cc[bb!!cccvvvvvvvvvvvvvccc22bb]	chr1:1050312-1050557(-)$1	245	206	237	24.5192
cc!!ffffffvvvvvvvvvvvvvffffff22	chr1:249151723-249152026(-)$1	303	226	257	24.3060
d[bb[fffffftttttttttttffffff]bb	chr11:828264-828573(-)$1	309	253	284	22.9588
!!eeeee[a[bbtttttttttttbb]a]eee	chr19:16187718-16187969(+)$1	251	70	101	23.4005
$$$$eeeee[attttttttttta]eeeee44	chr7:139257472-139257743(-)$1	271	120	151	23.3060
eeee"""cccvvvvvvvvvvvvvccceeeee	chr15:68491924-68492241(-)$1	317	167	198	24.4603
d[ddddeeeeevvvvvvvvvvvvveeeee]d	chr4:2935707-2935963(-)$1	256	177	208	23.7090
fffdddd[cccvvvvvvvvvvvvvccc]ddd	chr3:100428825-100429070(+)$1	245	72	103	24.3373
c$$$$$ddddbbtttttttttttbb]dddd5	chr17:42276859-42277127(-)$1	268	155	186	21.2989
a!!gggggggwwwwwwwwwwwwwwggggggg	chr9:35690588-35690846(-)$1	258	139	170	24.9135
c[iiiiiiiiiuuuuuuuuuuuuiiiiiiii	chr11:61196970-61197343(-)$1	373	111	142	26.4860
hhhhhhhhcccuuuuuuuuuuuuccc22hhh	chr1:1821720-1821946(-)$1	226	56	87	23.7392
cc!!a[ddddauuuuuuuuuuuua]dddd]a	chr19:56185501-56185796(+)$1	295	27	58	25.1177
cc::ffffff[attttttttttta]ffffff	chr19:12832827-12833113(-)$1	286	231	262	22.4081
============ttttttttttt========	chr19:58991100-58991356(-)$1	256	160	191	25.9067
fff:cccdddduuuuuuuuuuuudddd22cc	chr12:133293864-133294139(+)$1	275	198	229	23.1341
d####ffffffyyyyyyyyyyyyyyyyffff	chr3:196074523-196074808(-)$1	285	195	226	22.0274
:==========ttttttttttt=========	chr16:88922543-88922825(-)$1	282	8	39	24.6468
f[iiiiiiiiivvvvvvvvvvvvviiiiiii	chr2:159313411-159313677(+)$1	266	218	249	26.0908
ggggggg[bbxxxxxxxxxxxxxxxbbgggg	chr11:62482460-62482682(-)$1	222	90	121	17.9758
fffffccccccuuuuuuuuuuuuccc]ccc]	chr22:18256606-18256906(-)$1	300	109	140	25.1134
""bb[ffffffvvvvvvvvvvvvvffffff]	chr16:30662077-30662365(+)$1	288	157	188	24.5164
b!!cccbb!!auuuuuuuuuuuua22bb]cc	chr19:42788316-42788560(+)$1	244	81	112	24.2158
c[bb[fffffftttttttttttffffff]bb	chr9:137023898-137024185(+)$1	287	3	34	23.1244
ggggggg[bbxxxxxxxxxxxxxxxbbgggg	chr11:62482482-62482738(-)$1	256	146	177	17.9758
ee!!bb[ddddtttttttttttdddd]bb]e	chr21:46644421-46644686(+)$1	265	90	121	22.5867
ddddddd!!ccctttttttttttccc4444d	chr1:44170861-44171115(+)$1	254	113	144	23.6817
GGdddd!!cccvvvvvvvvvvvvvcccdddd	chr8:145691411-145691674(+)$1	263	15	46	23.3743
:dddd[ddddvvvvvvvvvvvvvdddd]ddd	chr10:7326072-7326384(-)$1	312	33	64	22.5566
"""a[fffffftttttttttttffffffaii	chr19:41829380-41829646(-)$1	266	114	145	23.9001
=======[cccvvvvvvvvvvvvvccc]===	chr2:97525519-97525774(-)$1	255	150	181	26.6263
ccdddd"""ccctttttttttttccc22ddd	chr6:41760510-41760789(-)$1	279	47	78	23.6085
bbffffffcccuuuuuuuuuuuuccc]ffff	chr6:37142052-37142314(+)$1	262	201	232	24.6999
eeeee"""ddddtttttttttttdddd333e	chr7:100732786-100733059(+)$1	273	53	84	23.2551
"a[bb[eeeeeuuuuuuuuuuuueeeee]bb	chr16:848351-848635(+)$1	284	49	80	23.9434
b[bb[bbddddyyyyyyyyyyyyyyyydddd	chr17:46131908-46132227(+)$1	319	79	110	21.0006
iiiiiiiiiwwwwwwwwwwwwwwiiiiiiii	chr17:5346292-5346541(-)$1	249	190	221	24.5463
cbb!!gggggggtttttttttttggggggg3	chr7:44614188-44614491(-)$1	303	18	49	24.4924
[bb!!dddd[avvvvvvvvvvvvva]dddd2	chr19:59084389-59084657(-)$1	268	106	137	24.1470
============ttttttttttt========	chr1:150547232-150547486(-)$1	254	157	188	25.9067
#eeeee!!ddddtttttttttttdddd22ee	chr15:35271715-35271982(-)$1	267	190	221	22.9335
gg[a[eeeeevvvvvvvvvvvvveeeee]ag	chr12:111180490-111180771(-)$1	281	180	211	24.5918
ggg[bb[a[ccctttttttttttccc]a22b	chr3:42845636-42845929(-)$1	293	167	198	24.1472
e[iiiiiiiiivvvvvvvvvvvvviiiiiii	chr2:159313508-159313741(+)$1	233	121	152	26.0899
deeeee[ddddtttttttttttdddd]eeee	chr9:140348891-140349204(-)$1	313	235	266	22.6383
e!!ccc[bbwwwwwwwwwwwwwwbb]ccc22	chr20:62589023-62589280(-)$1	257	25	56	22.6515
iiiiiiiiiyyyyyyyyyyyyyyyyiiiiii	chr18:48610785-48611065(+)$1	280	131	162	23.9670
============ttttttttttt========	chr19:58990967-58991224(-)$1	257	28	59	25.9067
gg"""ddddwwwwwwwwwwwwwwdddd333g	chr19:42751889-42752146(-)$1	257	22	53	23.5405
ddd[ggggggguuuuuuuuuuuuggggggg]	chr2:48010574-48010873(+)$1	299	189	220	25.3897
b[a[cccyyyyyyyyyyyyyyyyccc]a]bb	chr7:99697892-99698213(-)$1	321	232	263	22.4623
ccc!!ffffffvvvvvvvvvvvvvffffff2	chr1:249151583-249151913(-)$1	330	112	143	24.5568
bbffffffcccuuuuuuuuuuuuccc]ffff	chr6:37142114-37142345(+)$1	231	139	170	24.6999

#otherMatches

#Seq PSSM
CCAACGGGUUCCCCCAGACCAUUAGAACCCG	chrX:133930864-133931140(-)$1	276	12	43	22.1460
CGGGGCUGCCAAGGGAGGAGGAAGAUGGCGG	chr6:117996596-117996882(+)$1	286	48	79	23.3455
ggcgcUGGGGAAGGGGGGAGGGACGGGCCGC	chr14:32546302-32546551(+)$1	249	40	71	22.0849
gcucuuuaguggugauuugugagauuuuggu	chr1:1050312-1050557(-)$1	245	206	237	24.5192
GGUUGCCCUGGGGUUUGAGGGAACAGGGCUC	chr1:249151723-249152026(-)$1	303	226	257	24.3060
GCCAACUUCAGGAGAGGAGGAGCUGGAGGUG	chr11:828264-828573(-)$1	309	253	284	22.9588
GAUCUCCGGGUGGAGAAGUGGAGCGGCGGGA	chr19:16187718-16187969(+)$1	251	70	101	23.4005
aggagggagagaaggagggaggCGCUCCUGG	chr7:139257472-139257743(-)$1	271	120	151	23.3060
GGCAUGGGCGGAGAGUGACCAGACGCUGCUG	chr15:68491924-68492241(-)$1	317	167	198	24.4603
CAGAGCCCCUGCCAUCAGCCCCUUUAGGGUG	chr4:2935707-2935963(-)$1	256	177	208	23.7090
UCCAAGCGUUUGGAUUGAGAGGAGAGGGGCU	chr3:100428825-100429070(+)$1	245	72	103	24.3373
CGAGGACGGACCGACGGACAUGGGGCUCCGG	chr17:42276859-42277127(-)$1	268	155	186	21.2989
CAGCCGCGUGGAAAAUAUGCGGGGCACGUGG	chr9:35690588-35690846(-)$1	258	139	170	24.9135
CCGGGUUUGUCGGGAGGGAGCGGGGCGGGCC	chr11:61196970-61197343(-)$1	373	111	142	26.4860
GGGCCCGCGGCGCGAGAACAAAggccgggcg	chr1:1821720-1821946(-)$1	226	56	87	23.7392
GUGACAGCCGCAGACACACGACAGCCGGCAG	chr19:56185501-56185796(+)$1	295	27	58	25.1177
GUUGAGCGGGGUGGGGGGAGGGGAGCUCGUU	chr19:12832827-12833113(-)$1	286	231	262	22.4081
CUGGGUAGGGCUGGUAGCACAGAGGCCCUGC	chr19:58991100-58991356(-)$1	256	160	191	25.9067
AGCUUGGGGUUGAAGUUUAAUAAAAUCGUCC	chr12:133293864-133294139(+)$1	275	198	229	23.1341
CUGCUGCAUUUUUUUAUAAAUACAUGUAAAU	chr3:196074523-196074808(-)$1	285	195	226	22.0274
GACCUUUCCCGCCCUCUACUCUUGGGAAAGG	chr16:88922543-88922825(-)$1	282	8	39	24.6468
ccgcggcACUUUUUUAAUUUUUUCGGGUGCC	chr2:159313411-159313677(+)$1	266	218	249	26.0908
CAACAAAACUGUACAUUUUUUUUAAAGUUUG	chr11:62482460-62482682(-)$1	222	90	121	17.9758
GCCAGCCCCGGAGAGGAGAAAACCCGCGGGC	chr22:18256606-18256906(-)$1	300	109	140	25.1134
GGCGGGGACGCGAGGAGGGAAGGGGCGUCUG	chr16:30662077-30662365(+)$1	288	157	188	24.5164
GGAGCUgcgagggagggagggaacgagcgag	chr19:42788316-42788560(+)$1	244	81	112	24.2158
ACAGGAGGUGCUGAGGCUGGCUGCACCUGCU	chr9:137023898-137024185(+)$1	287	3	34	23.1244
CAACAAAACUGUACAUUUUUUUUAAAGUUUG	chr11:62482482-62482738(-)$1	256	146	177	17.9758
GCGGCUGUGAGGAGGAGUUGGGUUCAGGGAG	chr21:46644421-46644686(+)$1	265	90	121	22.5867
AGGGCAAUACUGAAGGGGUUAAACAGGUUUU	chr1:44170861-44171115(+)$1	254	113	144	23.6817
gggcUGUAGGGAGAGGAAGGAGAACCCCGGC	chr8:145691411-145691674(+)$1	263	15	46	23.3743
UUCUAUUGACUUGUGAUUUUUUUGUUGUUGG	chr10:7326072-7326384(-)$1	312	33	64	22.5566
CUGGUGGGGCUGAGAAGGGUAGAGUCCCCCC	chr19:41829380-41829646(-)$1	266	114	145	23.9001
GAGGGUGGGCCUGCUGUGGACAAUGGCAUAC	chr2:97525519-97525774(-)$1	255	150	181	26.6263
GUCGACAGUAGUGCAGAAUGAAAACUUGGUC	chr6:41760510-41760789(-)$1	279	47	78	23.6085
GGGAUAGGACUAGCACCAUUUUAAGUCCCUG	chr6:37142052-37142314(+)$1	262	201	232	24.6999
GGUCCGUUCUCCGGACAGUUAAAGGGGCUAG	chr7:100732786-100733059(+)$1	273	53	84	23.2551
guggggcucacaggauggugggaguggggcu	chr16:848351-848635(+)$1	284	49	80	23.9434
UGCUGCAGCCUAGGUAACAAGUUUGGGGGGC	chr17:46131908-46132227(+)$1	319	79	110	21.0006
UUUCUAUGAUAUUUUUUCCUUCUUCGUAGGG	chr17:5346292-5346541(-)$1	249	190	221	24.5463
uuggccccaggaguucaaaaccguccugggc	chr7:44614188-44614491(-)$1	303	18	49	24.4924
GAGGGUGGGGGAAGGGCAAGGAGGCGCUCGA	chr19:59084389-59084657(-)$1	268	106	137	24.1470
GGCAAAUCCUCCAAAAGGGAAAGGGAGGAUU	chr1:150547232-150547486(-)$1	254	157	188	25.9067
AUUUACAGAGAUGAAACAUGACAGUCUGAGU	chr15:35271715-35271982(-)$1	267	190	221	22.9335
UGGCGUGGGAAAGGAGGUGUGAGUcccgggc	chr12:111180490-111180771(-)$1	281	180	211	24.5918
UCGAGCAUGGGCGGAUGAGAGGAGUCGGGAG	chr3:42845636-42845929(-)$1	293	167	198	24.1472
ccgcggcACUUUUUUAAUUUUUUCGGGUGCC	chr2:159313508-159313741(+)$1	233	121	152	26.0899
CGACGGGGGCUAGGUGGGCAGGGGCUGCCGU	chr9:140348891-140349204(-)$1	313	235	266	22.6383
GGAGGAGCCGGAGGUGGAGGGUGGGGUCUGG	chr20:62589023-62589280(-)$1	257	25	56	22.6515
GGUAGCUGGAGAGGAAGGGAUGAAACCAGCU	chr18:48610785-48611065(+)$1	280	131	162	23.9670
CUGGGUAGGGCUGGUAGCACAGAGGCCCUGC	chr19:58990967-58991224(-)$1	257	28	59	25.9067
UCAUACCCCACAAGGUCACAGCAGGGGAGGG	chr19:42751889-42752146(-)$1	257	22	53	23.5405
AGAGUUGGCUUGAAUGAGUGCAGGGGUCGAG	chr2:48010574-48010873(+)$1	299	189	220	25.3897
GGCGCUAGAAUUUUAAACUAAAGUAGGGACC	chr7:99697892-99698213(-)$1	321	232	263	22.4623
AGGUUGCCCUGGGGUUUGAGGGAACAGGGCU	chr1:249151583-249151913(-)$1	330	112	143	24.5568
GGGAUAGGACUAGCACCAUUUUAAGUCCCUG	chr6:37142114-37142345(+)$1	231	139	170	24.6999

#DB
((..(((((((.............)))))))	chrX:133930864-133931140(-)$1	1	12	43	22.1460
))).(((((((..............))))))	chr6:117996596-117996882(+)$1	1	48	79	23.3455
(.(.(((................))))))))	chr14:32546302-32546551(+)$1	1	40	71	22.0849
((.((..(((.............)))..)).	chr1:1050312-1050557(-)$1	1	206	237	24.5192
((..((((((.............))))))..	chr1:249151723-249152026(-)$1	1	226	257	24.3060
(.((.((((((...........)))))).))	chr11:828264-828573(-)$1	1	253	284	22.9588
..(((((.(.((...........)).).)))	chr19:16187718-16187969(+)$1	1	70	101	23.4005
....(((((.(...........).)))))..	chr7:139257472-139257743(-)$1	1	120	151	23.3060
((((...(((.............))))))))	chr15:68491924-68492241(-)$1	1	167	198	24.4603
(.(((((((((.............))))).)	chr4:2935707-2935963(-)$1	1	177	208	23.7090
(((((((.(((.............))).)))	chr3:100428825-100429070(+)$1	1	72	103	24.3373
(.....((((((...........)).)))).	chr17:42276859-42277127(-)$1	1	155	186	21.2989
(..(((((((..............)))))))	chr9:35690588-35690846(-)$1	1	139	170	24.9135
(.(((((((((............))))))))	chr11:61196970-61197343(-)$1	1	111	142	26.4860
(((((((((((............)))..)))	chr1:1821720-1821946(-)$1	1	56	87	23.7392
((..(.(((((............).)))).)	chr19:56185501-56185796(+)$1	1	27	58	25.1177
))..((((((.(...........).))))))	chr19:12832827-12833113(-)$1	1	231	262	22.4081
((((((((((((...........))))))))	chr19:58991100-58991356(-)$1	1	160	191	25.9067
))).(((((((............))))..))	chr12:133293864-133294139(+)$1	1	198	229	23.1341
(....((((((................))))	chr3:196074523-196074808(-)$1	1	195	226	22.0274
.((((((((((...........)))))))))	chr16:88922543-88922825(-)$1	1	8	39	24.6468
(.(((((((((.............)))))))	chr2:159313411-159313677(+)$1	1	218	249	26.0908
(((((((.((...............))))))	chr11:62482460-62482682(-)$1	1	90	121	17.9758
(((((((((((............))).))).	chr22:18256606-18256906(-)$1	1	109	140	25.1134
..((.((((((.............)))))).	chr16:30662077-30662365(+)$1	1	157	188	24.5164
(..(((((..(............)..)).))	chr19:42788316-42788560(+)$1	1	81	112	24.2158
(.((.((((((...........)))))).))	chr9:137023898-137024185(+)$1	1	3	34	23.1244
(((((((.((...............))))))	chr11:62482482-62482738(-)$1	1	146	177	17.9758
((..((.((((...........)))).)).)	chr21:46644421-46644686(+)$1	1	90	121	22.5867
(((((((..(((...........)))....)	chr1:44170861-44171115(+)$1	1	113	144	23.6817
((((((..(((.............)))))))	chr8:145691411-145691674(+)$1	1	15	46	23.3743
.((((.((((.............)))).)))	chr10:7326072-7326384(-)$1	1	33	64	22.5566
...(.((((((...........)))))))))	chr19:41829380-41829646(-)$1	1	114	145	23.9001
(((((((.(((.............))).)))	chr2:97525519-97525774(-)$1	1	150	181	26.6263
))((((...(((...........)))..)))	chr6:41760510-41760789(-)$1	1	47	78	23.6085
(((((((((((............))).))))	chr6:37142052-37142314(+)$1	1	201	232	24.6999
(((((...((((...........))))...)	chr7:100732786-100733059(+)$1	1	53	84	23.2551
.(.((.(((((............))))).))	chr16:848351-848635(+)$1	1	49	80	23.9434
(.((.((((((................))))	chr17:46131908-46132227(+)$1	1	79	110	21.0006
(((((((((..............))))))))	chr17:5346292-5346541(-)$1	1	190	221	24.5463
(((..(((((((...........))))))).	chr7:44614188-44614491(-)$1	1	18	49	24.4924
.((..((((.(.............).)))).	chr19:59084389-59084657(-)$1	1	106	137	24.1470
((((((((((((...........))))))))	chr1:150547232-150547486(-)$1	1	157	188	25.9067
.(((((..((((...........))))..))	chr15:35271715-35271982(-)$1	1	190	221	22.9335
((.(.(((((.............))))).))	chr12:111180490-111180771(-)$1	1	180	211	24.5918
(((.((.(.(((...........))).)..)	chr3:42845636-42845929(-)$1	1	167	198	24.1472
(.(((((((((.............)))))))	chr2:159313508-159313741(+)$1	1	121	152	26.0899
)(((((.((((...........)))).))))	chr9:140348891-140349204(-)$1	1	235	266	22.6383
(..(((.((..............)).)))..	chr20:62589023-62589280(-)$1	1	25	56	22.6515
(((((((((................))))))	chr18:48610785-48611065(+)$1	1	131	162	23.9670
((((((((((((...........))))))))	chr19:58990967-58991224(-)$1	1	28	59	25.9067
((...((((..............))))...)	chr19:42751889-42752146(-)$1	1	22	53	23.5405
(((.(((((((............))))))).	chr2:48010574-48010873(+)$1	1	189	220	25.3897
(.(.(((................))).).))	chr7:99697892-99698213(-)$1	1	232	263	22.4623
(((..((((((.............)))))).	chr1:249151583-249151913(-)$1	1	112	143	24.5568
(((((((((((............))).))))	chr6:37142114-37142345(+)$1	1	139	170	24.6999

#PSSM
c : 0.19	d : 0.10	e : 0.08	g : 0.08	b : 0.08	f : 0.07	= : 0.07	" : 0.05	h : 0.03	: : 0.03	i : 0.03	B : 0.01	! : 0.01	$ : 0.01	a : 0.01	G : 0.01	[ : 0.01	# : 0.01	
[ : 0.16	c : 0.12	e : 0.08	= : 0.08	g : 0.08	! : 0.07	b : 0.07	f : 0.05	d : 0.05	$ : 0.03	" : 0.03	i : 0.03	B : 0.01	h : 0.01	# : 0.01	G : 0.01	a : 0.01	
! : 0.10	b : 0.10	d : 0.10	e : 0.08	f : 0.08	i : 0.08	= : 0.08	[ : 0.05	g : 0.05	: : 0.03	c : 0.03	a : 0.03	$ : 0.03	" : 0.03	h : 0.01	# : 0.01	
b : 0.10	! : 0.10	d : 0.10	e : 0.08	i : 0.08	= : 0.08	: : 0.07	[ : 0.07	g : 0.05	f : 0.05	$ : 0.03	c : 0.03	a : 0.03	h : 0.01	# : 0.01	" : 0.01	
g : 0.10	[ : 0.10	d : 0.10	c : 0.08	f : 0.08	e : 0.08	i : 0.08	= : 0.08	b : 0.07	! : 0.05	" : 0.03	$ : 0.01	h : 0.01	a : 0.01	# : 0.01	
f : 0.17	g : 0.12	d : 0.12	c : 0.10	e : 0.08	i : 0.08	= : 0.08	[ : 0.05	b : 0.05	" : 0.03	! : 0.01	$ : 0.01	h : 0.01	
f : 0.17	g : 0.12	d : 0.12	e : 0.08	i : 0.08	= : 0.08	c : 0.07	[ : 0.07	! : 0.05	" : 0.05	b : 0.03	h : 0.01	
f : 0.17	d : 0.16	g : 0.08	[ : 0.08	i : 0.08	e : 0.07	= : 0.07	c : 0.05	! : 0.05	y : 0.03	b : 0.03	" : 0.03	h : 0.01	a : 0.01	
d : 0.19	c : 0.16	f : 0.14	g : 0.08	i : 0.08	e : 0.07	= : 0.07	b : 0.05	y : 0.03	! : 0.03	a : 0.01	" : 0.01	[ : 0.01	
c : 0.21	d : 0.16	f : 0.14	g : 0.08	= : 0.07	y : 0.05	[ : 0.05	e : 0.05	i : 0.05	w : 0.05	b : 0.03	! : 0.01	
c : 0.17	f : 0.10	d : 0.10	v : 0.08	g : 0.07	a : 0.07	w : 0.07	= : 0.07	y : 0.05	i : 0.05	b : 0.03	e : 0.03	x : 0.03	[ : 0.01	
v : 0.26	u : 0.17	t : 0.12	w : 0.08	y : 0.08	= : 0.05	c : 0.05	b : 0.03	x : 0.03	d : 0.03	a : 0.01	g : 0.01	
t : 0.33	v : 0.26	u : 0.17	w : 0.08	y : 0.08	x : 0.03	
t : 0.33	v : 0.26	u : 0.17	w : 0.08	y : 0.08	x : 0.03	
t : 0.33	v : 0.26	u : 0.17	w : 0.08	y : 0.08	x : 0.03	
t : 0.33	v : 0.26	u : 0.17	w : 0.08	y : 0.08	x : 0.03	
t : 0.33	v : 0.26	u : 0.17	w : 0.08	y : 0.08	x : 0.03	
t : 0.33	v : 0.26	u : 0.17	w : 0.08	y : 0.08	x : 0.03	
t : 0.33	v : 0.26	u : 0.17	w : 0.08	y : 0.08	x : 0.03	
t : 0.33	v : 0.26	u : 0.17	w : 0.08	y : 0.08	x : 0.03	
t : 0.33	v : 0.26	u : 0.17	w : 0.08	y : 0.08	x : 0.03	
t : 0.33	v : 0.26	u : 0.17	w : 0.08	y : 0.08	x : 0.03	
v : 0.26	t : 0.21	u : 0.17	w : 0.08	y : 0.08	f : 0.05	x : 0.03	d : 0.03	a : 0.01	= : 0.01	
c : 0.19	v : 0.17	d : 0.12	f : 0.07	= : 0.07	b : 0.05	a : 0.05	y : 0.05	w : 0.03	i : 0.03	x : 0.03	e : 0.03	g : 0.03	] : 0.01	
c : 0.24	d : 0.12	f : 0.10	g : 0.07	e : 0.07	i : 0.07	= : 0.07	b : 0.05	y : 0.05	] : 0.03	x : 0.03	w : 0.01	2 : 0.01	a : 0.01	
c : 0.24	d : 0.14	f : 0.12	g : 0.08	i : 0.08	] : 0.07	e : 0.07	= : 0.07	y : 0.03	b : 0.03	2 : 0.01	
d : 0.14	f : 0.12	] : 0.12	g : 0.08	e : 0.08	i : 0.08	c : 0.07	= : 0.07	2 : 0.05	b : 0.05	a : 0.03	y : 0.03	4 : 0.01	
f : 0.17	g : 0.12	e : 0.10	2 : 0.08	d : 0.08	i : 0.08	] : 0.07	= : 0.07	c : 0.03	b : 0.03	3 : 0.03	a : 0.03	h : 0.01	4 : 0.01	
d : 0.14	g : 0.12	f : 0.12	] : 0.10	e : 0.08	i : 0.08	= : 0.08	2 : 0.05	h : 0.03	b : 0.03	c : 0.03	3 : 0.03	4 : 0.01	a : 0.01	
g : 0.12	d : 0.12	i : 0.10	f : 0.10	b : 0.08	= : 0.08	e : 0.07	2 : 0.05	] : 0.05	c : 0.05	h : 0.03	4 : 0.03	3 : 0.03	a : 0.01	
g : 0.12	d : 0.12	e : 0.10	i : 0.10	b : 0.08	= : 0.08	] : 0.07	2 : 0.07	f : 0.07	h : 0.03	c : 0.03	4 : 0.01	5 : 0.01	a : 0.01	3 : 0.01	

#score	1329.1678885350848
#seq	56
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_UTR_m2_run1.txt

#BEAR
:::::::::::::::::::::::::::::::	chr17:27037830-27038118(-)$1	288	103	134	13.8345
:::::::::::::::::::::::::::::::	chr19:11561213-11561516(+)$1	303	75	106	13.8345
:::::::::::::::::::::::::::::::	chr19:17452804-17453112(+)$1	308	83	114	13.8345
:::::::::::::::::::::::::::::DD	chr17:28256911-28257216(-)$1	305	76	107	12.6160
:::::::::::::::::::::::::::::::	chr21:40177632-40177951(+)$1	319	58	89	13.8345
:::::::::::::::::::::::::::::::	chr20:251510-251775(-)$1	265	77	108	13.8345
:::::::::::::::::::::::::::::::	chrX:56592317-56592543(+)$1	226	55	86	13.8345
::::::::::::::::::::::::::::::b	chr22:50683560-50683908(-)$1	348	129	160	13.2480
:::::::::::::::::::::::::::::::	chr17:8063730-8064002(-)$1	272	90	121	13.8345
:::::::::::::::::::::::::::::::	chr13:113537332-113537660(+)$1	328	0	31	13.8345
:::::::::::::::::::::::::::::::	chr20:3848730-3849024(+)$1	294	95	126	13.8345
:::::::::::::::::::::::::::::::	chrX:53263350-53263626(-)$1	276	0	31	13.8345
:::::::::::::::::::::::::::::::	chr11:73685698-73685998(-)$1	300	0	31	13.8345
:::::::::::::::::::::::::::::DD	chr17:29422120-29422418(+)$1	298	0	31	12.6160
:::::::::::::::::::::::::::::::	chrX:133930201-133930461(-)$1	260	0	31	13.8345
:::::::::::::::::::::::::::::::	chr19:57742903-57743238(+)$1	335	0	31	13.8345
:::::::::::::::::::::::::::::::	chr19:17452766-17453004(+)$1	238	121	152	13.8345
:::::::::::::::::::::::::::::::	chr20:62153300-62153511(+)$1	211	12	43	13.8345
EE:::::::::::::::::::::::::::::	chr13:42894552-42894816(+)$1	264	77	108	12.9504
:::::::::::::::::::::::::::::::	chr19:6494493-6494816(-)$1	323	238	269	13.8345
:::::::::::::::::::::::::::::::	chr9:132900673-132901068(+)$1	395	35	66	13.8345
:::::::::::::::::::::::::::::::	chr2:200322906-200323175(-)$1	269	70	101	13.8345
:::::::::::::::::::::::::::::::	chrX:148561655-148561932(-)$1	277	131	162	13.8345
:::::::::::::::::::::::::::::::	chr17:7154739-7154990(-)$1	251	36	67	13.8345
cc:::::::::::::::::::::::::::::	chr12:53845903-53846181(+)$1	278	203	234	12.0507
::::::::::::::::::::::::::::HHH	chr22:39414642-39414894(+)$1	252	177	208	12.3718
:::::::::::::::::::::::::::::::	chr19:42734458-42734756(-)$1	298	86	117	13.8345
:::::::::::::::::::::::::::::::	chr3:196046298-196046557(-)$1	259	224	255	13.8345
:::::::::::::::::::::::::::::::	chr19:56671640-56671927(+)$1	287	9	40	13.8345
:::::::::::::::::::::::::::::::	chr16:69733952-69734244(+)$1	292	76	107	13.8345
:EEEEE:::::::::::::::::::::::::	chr16:29681131-29681400(+)$1	269	206	237	11.4545
:::::::::::::::::::::::::::::::	chr17:80708806-80709061(+)$1	255	0	31	13.8345
:::::::::::::::::::::::::::::::	chr1:155260089-155260334(-)$1	245	10	41	13.8345
dd:::::::::::::::::::::::::::::	chr20:33298267-33298551(+)$1	284	207	238	11.5220
:::::::::::::::::::::::::::::::	chr1:20812334-20812631(-)$1	297	0	31	13.8345
:::::::::::::::::::::::::::::::	chr19:51891553-51891862(-)$1	309	0	31	13.8345
:::::::::::::::::::::::::::::::	chr20:62153249-62153500(+)$1	251	63	94	13.8345
:::::::::::::::::::::::::::::::	chr12:53845984-53846191(+)$1	207	10	41	13.8345
:::::::::::::::::::::::::::::::	chr17:80708696-80708943(+)$1	247	0	31	13.8345
:::::::::::::::::::::::::::::::	chr5:112929774-112930106(+)$1	332	115	146	13.8345
::::::::::::::::::::::CCC::::::	chr2:97541666-97541893(-)$1	227	194	225	12.9334
:::::::::::::::::::::::::::::::	chrX:122735192-122735424(-)$1	232	0	31	13.8345
:::::::::::::::::::::::::::::::	chr3:185349315-185349588(+)$1	273	45	76	13.8345
:::::::::::::::::::::::::::::::	chr16:58054504-58054850(+)$1	346	21	52	13.8345
:::::::::::::::::::::::::::::::	chr3:38455013-38455295(+)$1	282	91	122	13.8345
:::::::::::::::::::::::::::::::	chr5:61602141-61602416(+)$1	275	67	98	13.8345
:::::::::::::::::::::::::::::::	chr1:145499197-145499478(+)$1	281	32	63	13.8345
:::::::::::::::::::::::::::::::	chr4:185309156-185309504(-)$1	348	100	131	13.8345
:::::::::::::::::::::::::::::::	chr17:80708604-80708866(+)$1	262	108	139	13.8345
:::::::::::::::::::::::::::::::	chr2:240898913-240899174(-)$1	261	0	31	13.8345
:::::::::::::::::::::::::::::::	chrX:122735101-122735364(-)$1	263	0	31	13.8345
:::::::::::::::::::::::::::::::	chr1:155260134-155260353(-)$1	219	19	50	13.8345
cc:::::::::::::::::::::::::::::	chr12:53846055-53846261(+)$1	206	11	42	12.0507
:::::::::::::::::::::::::::::::	chrX:133930482-133930754(-)$1	272	0	31	13.8345
:::::::::::::::::::::::::::::::	chrX:53221500-53221730(-)$1	230	0	31	13.8345
:::::::::DDDD::::::::::::::::::	chr19:10579340-10579613(+)$1	273	86	117	11.2265
:::::::::::::::::::::::::::::::	chr2:48132736-48133034(-)$1	298	68	99	13.8345
:::::::::::::::::::::::::::::::	chr2:97541618-97541834(-)$1	216	135	166	13.8345
:::::::::::::::::::::::::::::::	chr2:172016948-172017273(-)$1	325	112	143	13.8345
:::::::::::::::::::::::::::::::	chr22:22900040-22900318(-)$1	278	81	112	13.8345
:::::::::::::::::::::::::::::::	chr17:7154809-7155044(-)$1	235	75	106	13.8345
:::::::::::::::::::::::::::::::	chr1:227179468-227179769(-)$1	301	0	31	13.8345
:::::::::::::::::::::::::::::::	chr12:53845993-53846218(+)$1	225	0	31	13.8345
:::::::::::::::::::::::::::::::	chr17:7154844-7155064(-)$1	220	95	126	13.8345
:::::::::::::::::::::::::::::::	chr17:8063620-8063930(-)$1	310	28	59	13.8345
:::::::::::::::::::::::::::::::	chr16:69733920-69734152(+)$1	232	71	102	13.8345

#otherMatches

#Seq PSSM
acuccuucccucccuuccCACCCUACUCCUU	chr17:27037830-27038118(-)$1	288	103	134	13.8345
caaaaaaaaaaaauaauaauaauaagagaaa	chr19:11561213-11561516(+)$1	303	75	106	13.8345
ucccuuucccuuuccccuuccccuuccccuu	chr19:17452804-17453112(+)$1	308	83	114	13.8345
uccuccuccccguucccuucacccccacccc	chr17:28256911-28257216(-)$1	305	76	107	12.6160
cuaccucccuuccccuccucuucucucuccu	chr21:40177632-40177951(+)$1	319	58	89	13.8345
cucccucccucccuucuuccccccuucccuu	chr20:251510-251775(-)$1	265	77	108	13.8345
uuauuuuuccuaccuucccuuccucuugucu	chrX:56592317-56592543(+)$1	226	55	86	13.8345
cuucccccgcuccaccccucaccucaccucg	chr22:50683560-50683908(-)$1	348	129	160	13.2480
UCUCUUGCCUUCCUUCCCUUUCCCUUUCUUC	chr17:8063730-8064002(-)$1	272	90	121	13.8345
ccacguccccucaucccgucaccucgucccc	chr13:113537332-113537660(+)$1	328	0	31	13.8345
UAUUAAUCCCCAUCCCCCACCACCAAUCUUA	chr20:3848730-3849024(+)$1	294	95	126	13.8345
cuacucccacccccaccacccccagucacca	chrX:53263350-53263626(-)$1	276	0	31	13.8345
GCUUUCCUuuucuuccuucuuucucuucccu	chr11:73685698-73685998(-)$1	300	0	31	13.8345
agccuccuugccaacgcccccuuucccucuc	chr17:29422120-29422418(+)$1	298	0	31	12.6160
ccugccucaccaucauccucccuuccucauc	chrX:133930201-133930461(-)$1	260	0	31	13.8345
ccUACCUUACCUUACUCUUUCUUCUUCCCCU	chr19:57742903-57743238(+)$1	335	0	31	13.8345
ucccuuucccuuuccccuuccccuuccccuu	chr19:17452766-17453004(+)$1	238	121	152	13.8345
aucccucgccccccuccccaccucccacccc	chr20:62153300-62153511(+)$1	211	12	43	13.8345
ccuccucccacucucuucccccuccccccuc	chr13:42894552-42894816(+)$1	264	77	108	12.9504
CCUUUGACCUUGCCUCACCUUUCACCCCCCA	chr19:6494493-6494816(-)$1	323	238	269	13.8345
ccucgcccuucccccuuccccauccccuccc	chr9:132900673-132901068(+)$1	395	35	66	13.8345
cucuccccuuccucuucccuccucccugccu	chr2:200322906-200323175(-)$1	269	70	101	13.8345
CCCUCCUCUUUCCUCCCCUGUCCCUAAAAUA	chrX:148561655-148561932(-)$1	277	131	162	13.8345
ccccucccccaauuauccuuccccuucccuc	chr17:7154739-7154990(-)$1	251	36	67	13.8345
cccuuccccuucccgcccgcuccccuuuucc	chr12:53845903-53846181(+)$1	278	203	234	12.0507
cuacaaaaaaaaaaaaaaaaaaaaaaaaaaa	chr22:39414642-39414894(+)$1	252	177	208	12.3718
AGACCUCCACCUCCUCCAGACCCCCUCCCCU	chr19:42734458-42734756(-)$1	298	86	117	13.8345
uaucucuacaaaaauuaaaaagauuagccac	chr3:196046298-196046557(-)$1	259	224	255	13.8345
UCUUCCUCUCCUCCUUCCCUCCCAUCGUCCU	chr19:56671640-56671927(+)$1	287	9	40	13.8345
ccuuccaucucccccuccucccugccuucuu	chr16:69733952-69734244(+)$1	292	76	107	13.8345
uaucucuacaaaaaauuugaaauaugaaaaa	chr16:29681131-29681400(+)$1	269	206	237	11.4545
uccaucccugucccccgucccccuguccccc	chr17:80708806-80709061(+)$1	255	0	31	13.8345
CCCAUCCCUUCCUCCCCAGUCUACGUUCUCC	chr1:155260089-155260334(-)$1	245	10	41	13.8345
GGCUCAUUCCCCACCUUCAACUCCCACCUUA	chr20:33298267-33298551(+)$1	284	207	238	11.5220
ccucuccgacccucuuccucucccucccgau	chr1:20812334-20812631(-)$1	297	0	31	13.8345
ACUCUCAAUACCCUGUUCCCAAACCCAUUCA	chr19:51891553-51891862(-)$1	309	0	31	13.8345
aucccucgccccccuccccaccucccacccc	chr20:62153249-62153500(+)$1	251	63	94	13.8345
UCUCUUUCccccuuccuccuccuccuccucc	chr12:53845984-53846191(+)$1	207	10	41	13.8345
cccccgucccugugcccccgucccugucccc	chr17:80708696-80708943(+)$1	247	0	31	13.8345
UCUUUccucccucucuuccucccuuccuccu	chr5:112929774-112930106(+)$1	332	115	146	13.8345
UCCUCCCCACCCUCCUUCCUCUGUCUCCCUG	chr2:97541666-97541893(-)$1	227	194	225	12.9334
UCUUUCUuaaaucuuccucccuccuuaccuu	chrX:122735192-122735424(-)$1	232	0	31	13.8345
cuuuccccacccucccuccccccuucccccu	chr3:185349315-185349588(+)$1	273	45	76	13.8345
cucucucuuccucuccucucucucuuccucu	chr16:58054504-58054850(+)$1	346	21	52	13.8345
uccccauucucuccuuucaccaucucuccuc	chr3:38455013-38455295(+)$1	282	91	122	13.8345
ucccccucccacaccuaccccgcccccuccc	chr5:61602141-61602416(+)$1	275	67	98	13.8345
ACCUGCUUGCUAUCCCUUUCCUCCCCACCAC	chr1:145499197-145499478(+)$1	281	32	63	13.8345
uccuaucccaucccaucccaucccaucccau	chr4:185309156-185309504(-)$1	348	100	131	13.8345
cccgucccugucccccuguucccgucucccc	chr17:80708604-80708866(+)$1	262	108	139	13.8345
cuuuccuucccuccuucucuuccuuccuucc	chr2:240898913-240899174(-)$1	261	0	31	13.8345
uucuucuccccucccucccucccucccuucu	chrX:122735101-122735364(-)$1	263	0	31	13.8345
ACCCUUGUACCCCAUCCCUUCCUCCCCAGUC	chr1:155260134-155260353(-)$1	219	19	50	13.8345
ccuucccgcccgccccuauuguuccgccccc	chr12:53846055-53846261(+)$1	206	11	42	12.0507
cucucuccucuucccagaccaccuccuucuu	chrX:133930482-133930754(-)$1	272	0	31	13.8345
ccccucuuuuccuuccuuccuacccccuucu	chrX:53221500-53221730(-)$1	230	0	31	13.8345
CUUCCACCCUGGCACCAAAAUAAUUUCUCCU	chr19:10579340-10579613(+)$1	273	86	117	11.2265
uuccuccccccucucccacucuccccacccc	chr2:48132736-48133034(-)$1	298	68	99	13.8345
UCCUCCCCACCCUCCUUCCUCUGUCUCCCUG	chr2:97541618-97541834(-)$1	216	135	166	13.8345
uucucccccuuucccuccucccuguccccuc	chr2:172016948-172017273(-)$1	325	112	143	13.8345
uccuccccccacugccccucccccacugccc	chr22:22900040-22900318(-)$1	278	81	112	13.8345
ccccucccccacugcccccucccccaauuau	chr17:7154809-7155044(-)$1	235	75	106	13.8345
ucuccuccccacucuccccacccuccucacu	chr1:227179468-227179769(-)$1	301	0	31	13.8345
GUCUCUUUCccccuuccuccuccuccuccuc	chr12:53845993-53846218(+)$1	225	0	31	13.8345
ccccucccccacugcccccucccccaauuau	chr17:7154844-7155064(-)$1	220	95	126	13.8345
UCCUUCCCUUUCCCUUUCUUCCUGACUAGCC	chr17:8063620-8063930(-)$1	310	28	59	13.8345
cucccucccuuuccuccccucccugccuccc	chr16:69733920-69734152(+)$1	232	71	102	13.8345

#DB
...............................	chr17:27037830-27038118(-)$1	1	103	134	13.8345
...............................	chr19:11561213-11561516(+)$1	1	75	106	13.8345
...............................	chr19:17452804-17453112(+)$1	1	83	114	13.8345
.............................((	chr17:28256911-28257216(-)$1	1	76	107	12.6160
...............................	chr21:40177632-40177951(+)$1	1	58	89	13.8345
...............................	chr20:251510-251775(-)$1	1	77	108	13.8345
...............................	chrX:56592317-56592543(+)$1	1	55	86	13.8345
..............................(	chr22:50683560-50683908(-)$1	1	129	160	13.2480
...............................	chr17:8063730-8064002(-)$1	1	90	121	13.8345
...............................	chr13:113537332-113537660(+)$1	1	0	31	13.8345
...............................	chr20:3848730-3849024(+)$1	1	95	126	13.8345
...............................	chrX:53263350-53263626(-)$1	1	0	31	13.8345
...............................	chr11:73685698-73685998(-)$1	1	0	31	13.8345
.............................((	chr17:29422120-29422418(+)$1	1	0	31	12.6160
...............................	chrX:133930201-133930461(-)$1	1	0	31	13.8345
...............................	chr19:57742903-57743238(+)$1	1	0	31	13.8345
...............................	chr19:17452766-17453004(+)$1	1	121	152	13.8345
...............................	chr20:62153300-62153511(+)$1	1	12	43	13.8345
((.............................	chr13:42894552-42894816(+)$1	1	77	108	12.9504
...............................	chr19:6494493-6494816(-)$1	1	238	269	13.8345
...............................	chr9:132900673-132901068(+)$1	1	35	66	13.8345
...............................	chr2:200322906-200323175(-)$1	1	70	101	13.8345
...............................	chrX:148561655-148561932(-)$1	1	131	162	13.8345
...............................	chr17:7154739-7154990(-)$1	1	36	67	13.8345
)).............................	chr12:53845903-53846181(+)$1	1	203	234	12.0507
............................)))	chr22:39414642-39414894(+)$1	1	177	208	12.3718
...............................	chr19:42734458-42734756(-)$1	1	86	117	13.8345
...............................	chr3:196046298-196046557(-)$1	1	224	255	13.8345
...............................	chr19:56671640-56671927(+)$1	1	9	40	13.8345
...............................	chr16:69733952-69734244(+)$1	1	76	107	13.8345
.))))).........................	chr16:29681131-29681400(+)$1	1	206	237	11.4545
...............................	chr17:80708806-80709061(+)$1	1	0	31	13.8345
...............................	chr1:155260089-155260334(-)$1	1	10	41	13.8345
)).............................	chr20:33298267-33298551(+)$1	1	207	238	11.5220
...............................	chr1:20812334-20812631(-)$1	1	0	31	13.8345
...............................	chr19:51891553-51891862(-)$1	1	0	31	13.8345
...............................	chr20:62153249-62153500(+)$1	1	63	94	13.8345
...............................	chr12:53845984-53846191(+)$1	1	10	41	13.8345
...............................	chr17:80708696-80708943(+)$1	1	0	31	13.8345
...............................	chr5:112929774-112930106(+)$1	1	115	146	13.8345
......................)))......	chr2:97541666-97541893(-)$1	1	194	225	12.9334
...............................	chrX:122735192-122735424(-)$1	1	0	31	13.8345
...............................	chr3:185349315-185349588(+)$1	1	45	76	13.8345
...............................	chr16:58054504-58054850(+)$1	1	21	52	13.8345
...............................	chr3:38455013-38455295(+)$1	1	91	122	13.8345
...............................	chr5:61602141-61602416(+)$1	1	67	98	13.8345
...............................	chr1:145499197-145499478(+)$1	1	32	63	13.8345
...............................	chr4:185309156-185309504(-)$1	1	100	131	13.8345
...............................	chr17:80708604-80708866(+)$1	1	108	139	13.8345
...............................	chr2:240898913-240899174(-)$1	1	0	31	13.8345
...............................	chrX:122735101-122735364(-)$1	1	0	31	13.8345
...............................	chr1:155260134-155260353(-)$1	1	19	50	13.8345
)).............................	chr12:53846055-53846261(+)$1	1	11	42	12.0507
...............................	chrX:133930482-133930754(-)$1	1	0	31	13.8345
...............................	chrX:53221500-53221730(-)$1	1	0	31	13.8345
.........((((..................	chr19:10579340-10579613(+)$1	1	86	117	11.2265
...............................	chr2:48132736-48133034(-)$1	1	68	99	13.8345
...............................	chr2:97541618-97541834(-)$1	1	135	166	13.8345
...............................	chr2:172016948-172017273(-)$1	1	112	143	13.8345
...............................	chr22:22900040-22900318(-)$1	1	81	112	13.8345
...............................	chr17:7154809-7155044(-)$1	1	75	106	13.8345
...............................	chr1:227179468-227179769(-)$1	1	0	31	13.8345
...............................	chr12:53845993-53846218(+)$1	1	0	31	13.8345
...............................	chr17:7154844-7155064(-)$1	1	95	126	13.8345
...............................	chr17:8063620-8063930(-)$1	1	28	59	13.8345
...............................	chr16:69733920-69734152(+)$1	1	71	102	13.8345

#PSSM
: : 0.93	c : 0.03	E : 0.01	d : 0.01	
: : 0.92	E : 0.03	c : 0.03	d : 0.01	
: : 0.98	E : 0.01	
: : 0.98	E : 0.01	
: : 0.98	E : 0.01	
: : 0.98	E : 0.01	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.98	D : 0.01	
: : 0.98	D : 0.01	
: : 0.98	D : 0.01	
: : 0.98	D : 0.01	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.98	H : 0.01	
: : 0.95	D : 0.03	H : 0.01	
: : 0.93	D : 0.03	b : 0.01	H : 0.01	

#score	895.9428266342096
#seq	66
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_transcript_m2_run1.txt

#BEAR
"""iiiiiiiiinnnnniiiiiiiii	chr10:69832442-69832690(-)$1	248	3	29	11.9314
!ffffff[cccoooooocccffffff	chr19:34883341-34883587(+)$1	246	58	84	11.8289
g!!dddd!!bboooooobb]dddd22	chr1:145442467-145442716(+)$1	249	28	54	11.1015
b[gggggggbboooooobb]gggggg	chr22:36677295-36677528(-)$1	233	195	221	13.8018
gggg:ffffffoooooofffffffff	chr14:56150920-56151169(+)$1	249	93	119	10.5101
ffff[iiiiiiiiillliiiiiiiii	chr14:69254688-69254951(-)$1	263	80	106	10.7155
c!!bb[ccc[aooooooa]cccbb22	chr19:34876859-34877105(+)$1	246	60	86	11.5964
===========oooooo=========	chr4:48499963-48500225(-)$1	262	222	248	16.6356
=======================!!h	chr16:56462981-56463229(-)$1	248	122	148	10.6714
==========mmmm==========ff	chr6:26545668-26545956(+)$1	288	106	132	11.2237
"""ccc"""bboooooobb4444ccc	chr1:32508427-32508681(+)$1	254	208	234	12.8350
####==========lll=========	chr11:65199412-65199644(+)$1	232	59	85	13.1333
""iiiiiiiiiooooooiiiiiiiii	chr1:53692502-53692756(-)$1	254	143	169	15.6647
==========rrrrrrrrr=======	chr17:46698476-46698707(-)$1	231	4	30	12.2289
iiiiiii!!bbmmmmbb333iiiiii	chr18:55216847-55217109(-)$1	262	173	199	9.9054
ggggggg[cccoooooocccgggggg	chr3:9519599-9519840(+)$1	241	143	169	13.7892
$$$$gggggggooooooggggggg55	chr6:33377426-33377716(+)$1	290	247	273	11.7355
iiii####cccooooooccc333iii	chr14:70238190-70238477(+)$1	287	163	189	13.7464
===========oooooo=========	chr8:128753520-128753767(+)$1	247	21	47	16.6356
fffff[eeeeeooooooeeeeeffff	chr1:205687228-205687520(-)$1	292	117	143	10.2858
ggggggg[cccooooooccc333ggg	chr19:10406306-10406614(+)$1	308	16	42	13.8394
ff"""ffffffooooooffffff]ff	chr1:29474185-29474471(-)$1	286	117	143	11.5352
e[eeeee!!bboooooobb]eeeee]	chr4:174252911-174253218(-)$1	307	108	134	11.6763
====!!eeeeeooooooeeeee4444	chr11:65194233-65194491(+)$1	258	113	139	12.1280
=============mmmm=========	chr7:100278803-100279081(-)$1	278	84	110	12.7096
bb[==========lll==========	chr3:51435663-51435934(-)$1	271	178	204	12.7127
hhhhhhhhcccooooooccc333hhh	chr11:47491731-47491997(-)$1	266	172	198	10.8109
'==========mmmm==========2	chr1:78435236-78435486(-)$1	250	61	87	11.7928
((ggggggg[aooooooa]ggggggg	chr19:33087836-33088103(-)$1	267	177	203	12.7860
::gggggggbboooooobb]gggggg	chr22:36677278-36677495(-)$1	217	162	188	11.8719
HHccc[cccbboooooobb]ccc]cc	chr21:44513021-44513263(-)$1	242	164	190	11.2697
:ggggggg[bboooooobbggggggg	chr7:933158-933470(+)$1	312	162	188	12.9797
[eeeee!!cccooooooccc333eee	chr1:203276584-203276885(+)$1	301	74	100	12.0508
=========qqqqqqqq=========	chr6:37142966-37143259(+)$1	293	175	201	10.6206
:ggggggg[bboooooobb]gggggg	chr3:42661108-42661359(+)$1	251	221	247	13.0465
:ccc[ffffffooooooffffff333	chr15:30941972-30942252(+)$1	280	82	108	11.1016
=========qqqqqqqq=========	chr3:128338890-128339159(-)$1	269	86	112	10.6206
===========oooooo=========	chr15:77242025-77242307(+)$1	282	66	92	16.6356
============nnnnn=========	chr19:1258684-1258928(+)$1	244	62	88	13.0527
==========mmmm============	chr4:174252775-174253014(-)$1	239	6	32	11.8187
===========oooooo=========	chr7:120936967-120937217(+)$1	250	84	110	16.6356
ddd[iiiiiiiiimmmmiiiiiiiii	chr2:68405914-68406198(-)$1	284	8	34	10.1486
===========ppppppp========	chr14:70238099-70238357(+)$1	258	142	168	10.2628
cc[bb[ccc[aooooooa]ccc]bbc	chr11:76261279-76261569(+)$1	290	180	206	11.7025
eee[cccddddoooooodddd333cc	chr11:85989505-85989841(+)$1	336	120	146	10.4813
g####ffffffooooooffffff444	chr8:101734057-101734282(-)$1	225	99	125	12.0312
iiiiiiiiirrrrrrrrriiiiiiii	chr3:180702226-180702520(-)$1	294	247	273	11.3871
#ddddffffffooooooffffff444	chr17:56050985-56051202(-)$1	217	10	36	11.0091
!!bbgggggggooooooggggggg]b	chr1:182352941-182353174(-)$1	233	57	83	13.2027
!!ffffff[bboooooobb22fffff	chr1:150237738-150238028(-)$1	290	20	46	11.7013
dd[eeeee[bboooooobbeeeeedd	chr1:53748915-53749218(-)$1	303	258	284	10.6485
$$$$gggggggooooooggggggg55	chr6:33377541-33377786(+)$1	245	132	158	11.7355

#otherMatches

#Seq PSSM
GUAAUGAUCUAGGACAGCUAGGUCAU	chr10:69832442-69832690(-)$1	248	3	29	11.9314
AGGAUCUGUCCCUGGUAGGAGGGUCU	chr19:34883341-34883587(+)$1	246	58	84	11.8289
GGUUGGUUUCAUGUUUUUGUAUUAUG	chr1:145442467-145442716(+)$1	249	28	54	11.1015
AUGUGCUACGAGCCGUGUCUGUAGCA	chr22:36677295-36677528(-)$1	233	195	221	13.8018
AGUUUAGUUUUAUAAUAAAAACUGUU	chr14:56150920-56151169(+)$1	249	93	119	10.5101
GGuuauuuuauuuuaaaaaaaugaaa	chr14:69254688-69254951(-)$1	263	80	106	10.7155
UAAGCACAGGUAGGCAAAGCUGGCCC	chr19:34876859-34877105(+)$1	246	60	86	11.5964
ACUGGGCUCUGUGAUUCCAGAGUUUA	chr4:48499963-48500225(-)$1	262	222	248	16.6356
UAAAGUGAUCACUGUUCUUUUUUUAU	chr16:56462981-56463229(-)$1	248	122	148	10.6714
AAGUUUUAUAAAAGUGUAGAAUUUUG	chr6:26545668-26545956(+)$1	288	106	132	11.2237
GAGGCAUCCCGUAAAGUUGUAGUUGC	chr1:32508427-32508681(+)$1	254	208	234	12.8350
guuauaagguacuuuuaagguauuuu	chr11:65199412-65199644(+)$1	232	59	85	13.1333
AUGUGAUAAAAUCCAAUUUUUAUUAU	chr1:53692502-53692756(-)$1	254	143	169	15.6647
GUCGUGAAAUUGUGCUUGUGUUUCGU	chr17:46698476-46698707(-)$1	231	4	30	12.2289
UGCAAUAACUGUUAUCAUAAUAUUGU	chr18:55216847-55217109(-)$1	262	173	199	9.9054
GAGUGUUUACACCUUGCUGUAACAUU	chr3:9519599-9519840(+)$1	241	143	169	13.7892
GAAGGCAGAUACUUUCAUAUCUGUAA	chr6:33377426-33377716(+)$1	290	247	273	11.7355
GAAAACUAAUUGUAUUAAAUGUCUUU	chr14:70238190-70238477(+)$1	287	163	189	13.7464
UAUAGUACCUAGUAUUAUAGGUACUA	chr8:128753520-128753767(+)$1	247	21	47	16.6356
GAUGAUGGUCUGGGGAGAGAUUUUAU	chr1:205687228-205687520(-)$1	292	117	143	10.2858
UCUGAGAGGGGGCGUGACCUGGGUCU	chr19:10406306-10406614(+)$1	308	16	42	13.8394
agaaaagaauuuuuuuuaauuuuauu	chr1:29474185-29474471(-)$1	286	117	143	11.5352
UGUAUAGCUGAUAAGAUUCUCUGUAG	chr4:174252911-174253218(-)$1	307	108	134	11.6763
GUUUGGUUAGGGGAAAGCCUGAAUAA	chr11:65194233-65194491(+)$1	258	113	139	12.1280
GUUUUUUUUUUUUUUUUAAGAAAAAA	chr7:100278803-100279081(-)$1	278	84	110	12.7096
ACUUCAUUUUCUUUGGAAGAAAAUGA	chr3:51435663-51435934(-)$1	271	178	204	12.7127
GGUUGGGGAGGCGCUGUUCUGAAUCC	chr11:47491731-47491997(-)$1	266	172	198	10.8109
auuuuuuaaaaaauuuuuuaaaaaaG	chr1:78435236-78435486(-)$1	250	61	87	11.7928
CUUUAUGAUUCUUGACUGUGUCAUGG	chr19:33087836-33088103(-)$1	267	177	203	12.7860
AUGUGCUACGAGCCGUGUCUGUAGCA	chr22:36677278-36677495(-)$1	217	162	188	11.8719
GGGUUUCUGAAUAAAAUUUGUAGUGA	chr21:44513021-44513263(-)$1	242	164	190	11.2697
GGUGAGUGUGGUCCUGUUCUGCUCAC	chr7:933158-933470(+)$1	312	162	188	12.9797
UGAAGAGCuauuuauauauauuauuu	chr1:203276584-203276885(+)$1	301	74	100	12.0508
UAAAAGAGAUCUUAUUUUUUUUUUUA	chr6:37142966-37143259(+)$1	293	175	201	10.6206
CUUUAUUUGCAUGAAUUUGGGGauaa	chr3:42661108-42661359(+)$1	251	221	247	13.0465
AACUUUAUGAGGUAUAAUUCAUAUAU	chr15:30941972-30942252(+)$1	280	82	108	11.1016
UCuuuuuuuuuuuuuuuaaaaaaaga	chr3:128338890-128339159(-)$1	269	86	112	10.6206
AGGGUUUUAUUGUAUGAAAUAGAACU	chr15:77242025-77242307(+)$1	282	66	92	16.6356
GGUAGAGCUCAAGGAUUUUGGGUUUU	chr19:1258684-1258928(+)$1	244	62	88	13.0527
GUUGAAUGUUCCUAAAUAUUUAAUGG	chr4:174252775-174253014(-)$1	239	6	32	11.8187
auuuuuauauauauuuuuauauGAAG	chr7:120936967-120937217(+)$1	250	84	110	16.6356
AACAUUAUUUCCUUACCGGGGAAUGA	chr2:68405914-68406198(-)$1	284	8	34	10.1486
CAUACUUGCUAAAAAUUCUGGUAAGU	chr14:70238099-70238357(+)$1	258	142	168	10.2628
GAUCAUGGCCGGUGAAACAGUUUUGU	chr11:76261279-76261569(+)$1	290	180	206	11.7025
UGUAUCUUGCUAGUAAGGGCACGUAG	chr11:85989505-85989841(+)$1	336	120	146	10.4813
UCCGCGUCUCCCCCGCCGGAGACUUU	chr8:101734057-101734282(-)$1	225	99	125	12.0312
AUUUUAAAUCAGAUUAUAGUUUAGAA	chr3:180702226-180702520(-)$1	294	247	273	11.3871
CCUGAUAUUUGGAGAUGUAAAUAUUG	chr17:56050985-56051202(-)$1	217	10	36	11.0091
CUUAAAAAGUUAUAACCAACUUUUCU	chr1:182352941-182353174(-)$1	233	57	83	13.2027
CACUCCAGAGCUGCAGUGCCACUGGA	chr1:150237738-150238028(-)$1	290	20	46	11.7013
caaggcaccggcaguuuccgugucug	chr1:53748915-53749218(-)$1	303	258	284	10.6485
GAAGGCAGAUACUUUCAUAUCUGUAA	chr6:33377541-33377786(+)$1	245	132	158	11.7355

#DB
...(((((((((.....)))))))))	chr10:69832442-69832690(-)$1	1	3	29	11.9314
.((((((.(((......)))))))))	chr19:34883341-34883587(+)$1	1	58	84	11.8289
(..((((..((......)).))))..	chr1:145442467-145442716(+)$1	1	28	54	11.1015
(.(((((((((......)).))))))	chr22:36677295-36677528(-)$1	1	195	221	13.8018
)))).((((((......))))))(((	chr14:56150920-56151169(+)$1	1	93	119	10.5101
((((.(((((((((...)))))))))	chr14:69254688-69254951(-)$1	1	80	106	10.7155
(..((.(((.(......).)))))..	chr19:34876859-34877105(+)$1	1	60	86	11.5964
)((((((((((......)))))))))	chr4:48499963-48500225(-)$1	1	222	248	16.6356
(((((((((((((((((((((((..(	chr16:56462981-56463229(-)$1	1	122	148	10.6714
((((((((((....))))))))))((	chr6:26545668-26545956(+)$1	1	106	132	11.2237
...(((...((......))....)))	chr1:32508427-32508681(+)$1	1	208	234	12.8350
....((((((((((...)))))))))	chr11:65199412-65199644(+)$1	1	59	85	13.1333
..(((((((((......)))))))))	chr1:53692502-53692756(-)$1	1	143	169	15.6647
((((((((((.........)))))))	chr17:46698476-46698707(-)$1	1	4	30	12.2289
(((((((..((....))...))))))	chr18:55216847-55217109(-)$1	1	173	199	9.9054
(((((((.(((......)))))))))	chr3:9519599-9519840(+)$1	1	143	169	13.7892
....(((((((......)))))))..	chr6:33377426-33377716(+)$1	1	247	273	11.7355
((((....(((......)))...)))	chr14:70238190-70238477(+)$1	1	163	189	13.7464
(((((((((((......)))))))))	chr8:128753520-128753767(+)$1	1	21	47	16.6356
(((((.(((((......)))))))))	chr1:205687228-205687520(-)$1	1	117	143	10.2858
(((((((.(((......)))...)))	chr19:10406306-10406614(+)$1	1	16	42	13.8394
((...((((((......)))))).))	chr1:29474185-29474471(-)$1	1	117	143	11.5352
(.(((((..((......)).))))).	chr4:174252911-174253218(-)$1	1	108	134	11.6763
((((..(((((......)))))....	chr11:65194233-65194491(+)$1	1	113	139	12.1280
(((((((((((((....)))))))))	chr7:100278803-100279081(-)$1	1	84	110	12.7096
((.((((((((((...))))))))))	chr3:51435663-51435934(-)$1	1	178	204	12.7127
(((((((((((......)))...)))	chr11:47491731-47491997(-)$1	1	172	198	10.8109
.((((((((((....)))))))))).	chr1:78435236-78435486(-)$1	1	61	87	11.7928
..(((((((.(......).)))))))	chr19:33087836-33088103(-)$1	1	177	203	12.7860
..(((((((((......)).))))))	chr22:36677278-36677495(-)$1	1	162	188	11.8719
))(((.(((((......)).))).))	chr21:44513021-44513263(-)$1	1	164	190	11.2697
.(((((((.((......)))))))))	chr7:933158-933470(+)$1	1	162	188	12.9797
.(((((..(((......)))...)))	chr1:203276584-203276885(+)$1	1	74	100	12.0508
(((((((((........)))))))))	chr6:37142966-37143259(+)$1	1	175	201	10.6206
.(((((((.((......)).))))))	chr3:42661108-42661359(+)$1	1	221	247	13.0465
.(((.((((((......))))))...	chr15:30941972-30942252(+)$1	1	82	108	11.1016
(((((((((........)))))))))	chr3:128338890-128339159(-)$1	1	86	112	10.6206
(((((((((((......)))))))))	chr15:77242025-77242307(+)$1	1	66	92	16.6356
((((((((((((.....)))))))))	chr19:1258684-1258928(+)$1	1	62	88	13.0527
((((((((((....))))))))))((	chr4:174252775-174253014(-)$1	1	6	32	11.8187
(((((((((((......)))))))))	chr7:120936967-120937217(+)$1	1	84	110	16.6356
(((.(((((((((....)))))))))	chr2:68405914-68406198(-)$1	1	8	34	10.1486
(((((((((((.......))))))))	chr14:70238099-70238357(+)$1	1	142	168	10.2628
((.((.(((.(......).))).)))	chr11:76261279-76261569(+)$1	1	180	206	11.7025
(((.(((((((......))))...))	chr11:85989505-85989841(+)$1	1	120	146	10.4813
(....((((((......))))))...	chr8:101734057-101734282(-)$1	1	99	125	12.0312
(((((((((.........))))))))	chr3:180702226-180702520(-)$1	1	247	273	11.3871
.((((((((((......))))))...	chr17:56050985-56051202(-)$1	1	10	36	11.0091
..(((((((((......))))))).)	chr1:182352941-182353174(-)$1	1	57	83	13.2027
..((((((.((......))..)))))	chr1:150237738-150238028(-)$1	1	20	46	11.7013
((.(((((.((......)))))))))	chr1:53748915-53749218(-)$1	1	258	284	10.6485
....(((((((......)))))))..	chr6:33377541-33377786(+)$1	1	132	158	11.7355

#PSSM
= : 0.26	g : 0.09	: : 0.07	" : 0.05	! : 0.05	f : 0.05	i : 0.05	b : 0.03	c : 0.03	# : 0.03	$ : 0.03	e : 0.03	d : 0.03	h : 0.01	' : 0.01	( : 0.01	H : 0.01	[ : 0.01	
= : 0.28	g : 0.09	f : 0.07	! : 0.07	" : 0.05	i : 0.05	d : 0.05	[ : 0.03	# : 0.03	$ : 0.03	e : 0.03	c : 0.03	b : 0.01	h : 0.01	( : 0.01	: : 0.01	H : 0.01	
= : 0.28	g : 0.15	f : 0.07	i : 0.07	" : 0.05	e : 0.05	[ : 0.05	! : 0.03	# : 0.03	$ : 0.03	c : 0.03	d : 0.03	h : 0.01	b : 0.01	
= : 0.30	g : 0.15	i : 0.09	f : 0.07	b : 0.05	c : 0.05	e : 0.05	d : 0.03	# : 0.03	$ : 0.03	[ : 0.03	" : 0.01	h : 0.01	
= : 0.30	g : 0.19	i : 0.09	f : 0.05	c : 0.05	e : 0.05	d : 0.03	[ : 0.03	b : 0.03	# : 0.03	: : 0.01	" : 0.01	! : 0.01	h : 0.01	
= : 0.30	g : 0.19	f : 0.13	i : 0.11	[ : 0.07	e : 0.05	c : 0.03	d : 0.01	# : 0.01	! : 0.01	h : 0.01	
= : 0.30	g : 0.19	f : 0.13	i : 0.11	c : 0.07	e : 0.07	d : 0.01	" : 0.01	# : 0.01	h : 0.01	! : 0.01	
= : 0.30	g : 0.15	f : 0.11	i : 0.09	! : 0.07	[ : 0.05	c : 0.05	e : 0.05	" : 0.01	# : 0.01	h : 0.01	d : 0.01	
= : 0.30	c : 0.17	g : 0.11	i : 0.09	f : 0.09	[ : 0.07	! : 0.05	e : 0.03	" : 0.01	d : 0.01	
= : 0.26	b : 0.21	c : 0.11	f : 0.09	i : 0.07	[ : 0.05	g : 0.05	e : 0.03	q : 0.03	d : 0.01	r : 0.01	
b : 0.21	= : 0.21	c : 0.11	f : 0.09	i : 0.07	a : 0.05	g : 0.05	m : 0.03	r : 0.03	e : 0.03	q : 0.03	d : 0.01	
o : 0.67	= : 0.09	m : 0.07	i : 0.05	r : 0.03	q : 0.03	p : 0.01	
o : 0.67	= : 0.07	m : 0.07	n : 0.03	i : 0.03	r : 0.03	q : 0.03	p : 0.01	
o : 0.67	m : 0.11	n : 0.03	= : 0.03	r : 0.03	q : 0.03	i : 0.01	l : 0.01	p : 0.01	
o : 0.67	m : 0.07	l : 0.05	= : 0.05	n : 0.03	r : 0.03	q : 0.03	p : 0.01	
o : 0.67	= : 0.07	l : 0.05	n : 0.03	r : 0.03	m : 0.03	q : 0.03	b : 0.01	p : 0.01	
o : 0.67	= : 0.09	n : 0.03	l : 0.03	r : 0.03	m : 0.03	q : 0.03	b : 0.01	p : 0.01	
= : 0.26	b : 0.19	c : 0.11	f : 0.09	i : 0.07	a : 0.05	g : 0.05	r : 0.03	e : 0.03	3 : 0.01	p : 0.01	d : 0.01	
= : 0.28	b : 0.19	c : 0.11	i : 0.09	f : 0.09	] : 0.05	g : 0.05	e : 0.03	r : 0.01	3 : 0.01	d : 0.01	
= : 0.30	c : 0.15	] : 0.11	i : 0.09	f : 0.09	g : 0.09	e : 0.05	4 : 0.01	3 : 0.01	d : 0.01	2 : 0.01	
= : 0.30	g : 0.17	i : 0.11	f : 0.11	3 : 0.07	e : 0.07	c : 0.05	d : 0.03	4 : 0.01	2 : 0.01	
= : 0.30	g : 0.17	f : 0.13	i : 0.11	3 : 0.09	e : 0.07	c : 0.05	d : 0.01	4 : 0.01	
= : 0.30	g : 0.17	f : 0.15	i : 0.11	3 : 0.09	4 : 0.03	e : 0.03	d : 0.01	b : 0.01	c : 0.01	] : 0.01	
= : 0.28	g : 0.19	i : 0.13	f : 0.07	e : 0.05	4 : 0.05	b : 0.03	] : 0.03	3 : 0.03	d : 0.01	! : 0.01	c : 0.01	h : 0.01	
= : 0.26	i : 0.13	g : 0.13	f : 0.11	c : 0.05	4 : 0.05	2 : 0.03	5 : 0.03	e : 0.03	! : 0.01	h : 0.01	3 : 0.01	b : 0.01	] : 0.01	d : 0.01	
= : 0.24	i : 0.13	g : 0.13	f : 0.11	c : 0.07	2 : 0.05	4 : 0.05	h : 0.03	5 : 0.03	] : 0.01	e : 0.01	3 : 0.01	b : 0.01	d : 0.01	

#score	635.9839658857504
#seq	52
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_UTR_m3_run1.txt

#BEAR
ddddnnnnndddd	chr5:179050393-179050675(-)$1	282	170	183	10.9234
[cccnnnnnccc2	chr5:86690674-86690930(-)$1	256	137	150	7.8265
!cccnnnnnccc2	chr2:61753369-61753629(-)$1	260	117	130	7.8864
ddddnnnnndddd	chr16:28847368-28847618(+)$1	250	65	78	10.9234
ddddooooooddd	chr2:71635309-71635589(+)$1	280	136	149	8.2575
ddddooooooddd	chr16:720283-720560(+)$1	277	173	186	8.2575
ddddnnnnndddd	chr6:31509554-31509798(-)$1	244	222	235	10.9234
ddddnnnnndddd	chr1:25570455-25570717(-)$1	262	46	59	10.9234
dd[annnnna]dd	chr6:160169357-160169583(+)$1	226	67	80	9.8620
ddddooooooddd	chr4:174255230-174255488(-)$1	258	155	168	8.2575
eeeennnnneeee	chr4:152020794-152021049(+)$1	255	241	254	9.0778
ee[annnnna]ee	chr12:125398953-125399187(-)$1	234	80	93	8.8703
ddddnnnnndddd	chr3:3189804-3190067(+)$1	263	90	103	10.9234
ddddooooooddd	chr17:39846373-39846627(+)$1	254	192	205	8.2575
ggggnnnnngggg	chr7:42974664-42974963(+)$1	299	138	151	7.6334
ddddooooooddd	chr17:74730954-74731215(-)$1	261	16	29	8.2575
ddddnnnnndddd	chr3:50137412-50137683(+)$1	271	28	41	10.9234
ddddooooooddd	chr4:83812052-83812313(-)$1	261	32	45	8.2575
eeeennnnneeee	chr12:132195918-132196167(+)$1	249	146	159	9.0778
dd[annnnna]dd	chr17:74732044-74732300(-)$1	256	221	234	9.8620
ee[annnnna]ee	chr12:125398987-125399199(-)$1	212	92	105	8.8703
eeeennnnneeee	chr12:54678034-54678282(+)$1	248	169	182	9.0778
eeeennnnneeee	chr3:14519997-14520267(+)$1	270	188	201	9.0778
ddddnnnnndddd	chr17:30697064-30697294(+)$1	230	101	114	10.9234
eeeennnnneeee	chr6:31937123-31937379(+)$1	256	228	241	9.0778
ddddnnnnndddd	chr11:71719548-71719813(-)$1	265	136	149	10.9234
ddddnnnnndddd	chr14:21462988-21463249(+)$1	261	115	128	10.9234
ddddooooooddd	chr11:75113423-75113698(+)$1	275	245	258	8.2575
ddddnnnnndddd	chr1:1019491-1019808(-)$1	317	281	294	10.9234
ddddooooooddd	chr11:85372497-85372753(-)$1	256	187	200	8.2575
ddddnnnnndddd	chr3:50098912-50099160(+)$1	248	180	193	10.9234
eeeennnnneeee	chr14:21731296-21731540(-)$1	244	48	61	9.0778
ddddnnnnndddd	chr2:170429963-170430248(-)$1	285	184	197	10.9234
ddddnnnnndddd	chr12:98991741-98992015(+)$1	274	236	249	10.9234

#otherMatches

#Seq PSSM
GCGAGUGGUUCGC	chr5:179050393-179050675(-)$1	282	170	183	10.9234
AAGAUUUAUUCUC	chr5:86690674-86690930(-)$1	256	137	150	7.8265
CAGUCAUAAACUU	chr2:61753369-61753629(-)$1	260	117	130	7.8864
CACCCCCAAGGUG	chr16:28847368-28847618(+)$1	250	65	78	10.9234
UAGUAGUCAAACU	chr2:71635309-71635589(+)$1	280	136	149	8.2575
GUUCGGCCAAGAA	chr16:720283-720560(+)$1	277	173	186	8.2575
GAGCAAAGAGCUC	chr6:31509554-31509798(-)$1	244	222	235	10.9234
AUAAGUUUAUUAU	chr1:25570455-25570717(-)$1	262	46	59	10.9234
CAAGACUUCCCUG	chr6:160169357-160169583(+)$1	226	67	80	9.8620
CGGGGUCUGACCC	chr4:174255230-174255488(-)$1	258	155	168	8.2575
GCAGGUCGGCUGC	chr4:152020794-152021049(+)$1	255	241	254	9.0778
CGGGGCUUUCGUG	chr12:125398953-125399187(-)$1	234	80	93	8.8703
CCUCUUAAUGAGG	chr3:3189804-3190067(+)$1	263	90	103	10.9234
AAGUACAUAGACU	chr17:39846373-39846627(+)$1	254	192	205	8.2575
CCUAUAGCCUAGG	chr7:42974664-42974963(+)$1	299	138	151	7.6334
GGACCACAUAGUC	chr17:74730954-74731215(-)$1	261	16	29	8.2575
AGGCCCUCAGCCU	chr3:50137412-50137683(+)$1	271	28	41	10.9234
CUGCACUAACGCA	chr4:83812052-83812313(-)$1	261	32	45	8.2575
UGCAAGGACUGCA	chr12:132195918-132196167(+)$1	249	146	159	9.0778
CAGAAAGGAUGUG	chr17:74732044-74732300(-)$1	256	221	234	9.8620
CGGGGCUUUCGUG	chr12:125398987-125399199(-)$1	212	92	105	8.8703
UGCAGUAAUUGUG	chr12:54678034-54678282(+)$1	248	169	182	9.0778
UAGGCCCUCCCUA	chr3:14519997-14520267(+)$1	270	188	201	9.0778
GGACUUCAUGUCC	chr17:30697064-30697294(+)$1	230	101	114	10.9234
CAGCGCCUGGCUG	chr6:31937123-31937379(+)$1	256	228	241	9.0778
GCUGUAUCCUAGU	chr11:71719548-71719813(-)$1	265	136	149	10.9234
CAUGGAUUUCAUG	chr14:21462988-21463249(+)$1	261	115	128	10.9234
GCAGCAAGAACUG	chr11:75113423-75113698(+)$1	275	245	258	8.2575
GGCGCCCCCUGCC	chr1:1019491-1019808(-)$1	317	281	294	10.9234
UUUCUGAAUUGAG	chr11:85372497-85372753(-)$1	256	187	200	8.2575
AUGCUCAUUGCAU	chr3:50098912-50099160(+)$1	248	180	193	10.9234
GAUUUUUUUGAUC	chr14:21731296-21731540(-)$1	244	48	61	9.0778
UCUGAAGUGCGGA	chr2:170429963-170430248(-)$1	285	184	197	10.9234
AAUGUAUUUCAUU	chr12:98991741-98992015(+)$1	274	236	249	10.9234

#DB
((((.....))))	chr5:179050393-179050675(-)$1	1	170	183	10.9234
.(((.....))).	chr5:86690674-86690930(-)$1	1	137	150	7.8265
.(((.....))).	chr2:61753369-61753629(-)$1	1	117	130	7.8864
((((.....))))	chr16:28847368-28847618(+)$1	1	65	78	10.9234
((((......)))	chr2:71635309-71635589(+)$1	1	136	149	8.2575
((((......)))	chr16:720283-720560(+)$1	1	173	186	8.2575
((((.....))))	chr6:31509554-31509798(-)$1	1	222	235	10.9234
((((.....))))	chr1:25570455-25570717(-)$1	1	46	59	10.9234
((.(.....).))	chr6:160169357-160169583(+)$1	1	67	80	9.8620
((((......)))	chr4:174255230-174255488(-)$1	1	155	168	8.2575
((((.....))))	chr4:152020794-152021049(+)$1	1	241	254	9.0778
((.(.....).))	chr12:125398953-125399187(-)$1	1	80	93	8.8703
((((.....))))	chr3:3189804-3190067(+)$1	1	90	103	10.9234
((((......)))	chr17:39846373-39846627(+)$1	1	192	205	8.2575
((((.....))))	chr7:42974664-42974963(+)$1	1	138	151	7.6334
((((......)))	chr17:74730954-74731215(-)$1	1	16	29	8.2575
((((.....))))	chr3:50137412-50137683(+)$1	1	28	41	10.9234
((((......)))	chr4:83812052-83812313(-)$1	1	32	45	8.2575
((((.....))))	chr12:132195918-132196167(+)$1	1	146	159	9.0778
((.(.....).))	chr17:74732044-74732300(-)$1	1	221	234	9.8620
((.(.....).))	chr12:125398987-125399199(-)$1	1	92	105	8.8703
((((.....))))	chr12:54678034-54678282(+)$1	1	169	182	9.0778
((((.....))))	chr3:14519997-14520267(+)$1	1	188	201	9.0778
((((.....))))	chr17:30697064-30697294(+)$1	1	101	114	10.9234
((((.....))))	chr6:31937123-31937379(+)$1	1	228	241	9.0778
((((.....))))	chr11:71719548-71719813(-)$1	1	136	149	10.9234
((((.....))))	chr14:21462988-21463249(+)$1	1	115	128	10.9234
((((......)))	chr11:75113423-75113698(+)$1	1	245	258	8.2575
((((.....))))	chr1:1019491-1019808(-)$1	1	281	294	10.9234
((((......)))	chr11:85372497-85372753(-)$1	1	187	200	8.2575
((((.....))))	chr3:50098912-50099160(+)$1	1	180	193	10.9234
((((.....))))	chr14:21731296-21731540(-)$1	1	48	61	9.0778
((((.....))))	chr2:170429963-170430248(-)$1	1	184	197	10.9234
((((.....))))	chr12:98991741-98992015(+)$1	1	236	249	10.9234

#PSSM
d : 0.67	e : 0.23	[ : 0.02	! : 0.02	g : 0.02	
d : 0.67	e : 0.23	c : 0.05	g : 0.02	
d : 0.61	e : 0.17	[ : 0.11	c : 0.05	g : 0.02	
d : 0.61	e : 0.17	a : 0.11	c : 0.05	g : 0.02	
n : 0.76	o : 0.23	
n : 0.76	o : 0.23	
n : 0.76	o : 0.23	
n : 0.76	o : 0.23	
n : 0.76	o : 0.23	
d : 0.38	o : 0.23	e : 0.17	a : 0.11	c : 0.05	g : 0.02	
d : 0.61	e : 0.17	] : 0.11	c : 0.05	g : 0.02	
d : 0.67	e : 0.23	c : 0.05	g : 0.02	
d : 0.67	e : 0.23	2 : 0.05	g : 0.02	

#score	323.3428436213031
#seq	34
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105PMR_SBDS_transcript_m1_run1.txt

#BEAR
e[gggggggbb[cccooooooccc]bb]ggggggg22ee	chr19:893454-893690(+)$1	236	183	222	19.4597
d[ffffff####cccpppppppccc333ffffffddddf	chr7:5340291-5340511(+)$1	220	67	106	21.8618
ggggggccc!!a[bboooooobb]a]ccc22ggggggg:	chr5:109035342-109035590(-)$1	248	65	104	19.1217
iiiiiii[a####bboooooobb333a]iiiiiiiiibb	chr20:57607209-57607495(-)$1	286	50	89	23.2253
==========[ddddoooooodddd333===========	chr5:175055151-175055390(+)$1	239	48	87	20.9230
d[ffffff####cccpppppppccc333ffffffddddf	chr7:5340286-5340491(+)$1	205	72	111	21.8618

#otherMatches

#Seq PSSM
cccaggcuggaaugcaauggcgcgaucuuagcuuguugc	chr19:893454-893690(+)$1	236	183	222	19.4597
AACCCAGGCUAGACCGCAGGAAGGUGCAUUUGGGUUCCG	chr7:5340291-5340511(+)$1	220	67	106	21.8618
gcgaucuggcugcgaaaucugucaccccauugaucgcca	chr5:109035342-109035590(-)$1	248	65	104	19.1217
GAGGCGGUGAUUGGCAGGUCCGCACGCCCCGCCUCUUCC	chr20:57607209-57607495(-)$1	286	50	89	23.2253
gcgaucugguugugacaucuaucaccccacuggauugcc	chr5:175055151-175055390(+)$1	239	48	87	20.9230
AACCCAGGCUAGACCGCAGGAAGGUGCAUUUGGGUUCCG	chr7:5340286-5340491(+)$1	205	72	111	21.8618

#DB
(.(((((((((.(((......))).)).)))))))..))	chr19:893454-893690(+)$1	1	183	222	19.4597
(.((((((....(((.......)))...)))))))))))	chr7:5340291-5340511(+)$1	1	67	106	21.8618
(((((((((..(.((......)).).)))..))))))).	chr5:109035342-109035590(-)$1	1	65	104	19.1217
(((((((.(....((......))...).)))))))))))	chr20:57607209-57607495(-)$1	1	50	89	23.2253
((((((((((.((((......))))...)))))))))))	chr5:175055151-175055390(+)$1	1	48	87	20.9230
(.((((((....(((.......)))...)))))))))))	chr7:5340286-5340491(+)$1	1	72	111	21.8618

#PSSM
d : 0.33	e : 0.16	g : 0.16	i : 0.16	= : 0.16	
[ : 0.50	g : 0.16	i : 0.16	= : 0.16	
g : 0.33	f : 0.33	i : 0.16	= : 0.16	
g : 0.33	f : 0.33	i : 0.16	= : 0.16	
g : 0.33	f : 0.33	i : 0.16	= : 0.16	
g : 0.33	f : 0.33	i : 0.16	= : 0.16	
f : 0.33	g : 0.16	c : 0.16	i : 0.16	= : 0.16	
f : 0.33	g : 0.16	c : 0.16	[ : 0.16	= : 0.16	
# : 0.33	g : 0.16	c : 0.16	a : 0.16	= : 0.16	
# : 0.50	b : 0.16	! : 0.16	= : 0.16	
# : 0.50	b : 0.16	! : 0.16	[ : 0.16	
# : 0.50	[ : 0.16	a : 0.16	d : 0.16	
c : 0.50	[ : 0.16	# : 0.16	d : 0.16	
c : 0.50	b : 0.33	d : 0.16	
c : 0.50	b : 0.33	d : 0.16	
o : 0.66	p : 0.33	
o : 0.66	p : 0.33	
o : 0.66	p : 0.33	
o : 0.66	p : 0.33	
o : 0.66	p : 0.33	
o : 0.66	p : 0.33	
p : 0.33	b : 0.33	c : 0.16	d : 0.16	
c : 0.50	b : 0.33	d : 0.16	
c : 0.50	] : 0.16	3 : 0.16	d : 0.16	
c : 0.33	] : 0.16	a : 0.16	3 : 0.16	d : 0.16	
3 : 0.66	b : 0.16	] : 0.16	
3 : 0.50	b : 0.16	c : 0.16	a : 0.16	
3 : 0.50	] : 0.33	c : 0.16	
f : 0.33	g : 0.16	c : 0.16	i : 0.16	= : 0.16	
f : 0.33	g : 0.16	2 : 0.16	i : 0.16	= : 0.16	
f : 0.33	g : 0.16	2 : 0.16	i : 0.16	= : 0.16	
g : 0.33	f : 0.33	i : 0.16	= : 0.16	
g : 0.33	f : 0.33	i : 0.16	= : 0.16	
g : 0.33	f : 0.33	i : 0.16	= : 0.16	
g : 0.33	d : 0.33	i : 0.16	= : 0.16	
d : 0.33	2 : 0.16	g : 0.16	i : 0.16	= : 0.16	
d : 0.33	2 : 0.16	g : 0.16	i : 0.16	= : 0.16	
d : 0.33	e : 0.16	g : 0.16	b : 0.16	= : 0.16	
f : 0.33	e : 0.16	: : 0.16	b : 0.16	= : 0.16	

#score	126.45342650361664
#seq	6
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_CDS_m2_run2.txt

#BEAR
gggggg[aa[ddddmmmmdddd333a]a]gg	chr3:186333402-186333655(+)$1	253	128	159	15.0044
eeeee!!bb!!ddddllldddd]bb22eeee	chr2:216287972-216288198(-)$1	226	96	127	12.2974
ee[a[a!!cccddddllldddd]ccc22a]a	chr19:6707751-6707983(-)$1	232	149	180	12.6056
ddd[bb####ddddmmmmddddbb]ddddad	chr2:216236822-216237077(-)$1	255	96	127	12.4645
###eeeeea!!cccmmmmccc22a]eeeee3	chr21:46916893-46917106(+)$1	213	148	179	11.0483
[ggggggg[ddddnnnnndddd333gggggg	chr9:116822408-116822633(-)$1	225	117	148	12.0686
:::ccc####ddddmmmmdddd4444ccc::	chr4:74277700-74277935(+)$1	235	1	32	10.2646
ffff[bb####cccmmmmccc333bb]ffff	chr2:198263084-198263307(-)$1	223	169	200	11.7105
iiiiii"""eeeeemmmmeeeee]iiiiiii	chr3:58067311-58067558(+)$1	247	4	35	10.5353
c[ccc[ccc!!ddddllldddd22ccc]ccc	chr2:21225895-21226131(-)$1	236	72	103	13.2015
cccc[ccc!!ddddllldddd22ccc]ccc2	chr16:30080036-30080308(+)$1	272	83	114	13.3217
cccdddd[a!!cccmmmmccca]dddd]ccc	chr21:46906685-46906924(+)$1	239	86	117	10.7981
ggggggccc[cccmmmmcccccc22gggggg	chr1:19474956-19475196(-)$1	240	34	65	9.8204
cc[ccc$$$$$cccmmmmccc22cccccc:d	chr19:6696561-6696770(-)$1	209	108	139	10.6502
eeeee[ddddddddmmmmdddd]dddd]eee	chr3:58108777-58109014(+)$1	237	69	100	11.7257
iiiiiii[a[ddddoooooodddd]a]iiii	chr3:186334187-186334397(+)$1	210	6	37	11.3667
ffff!!bb!!ddddnnnnndddd]bbfffff	chr2:198264982-198265258(-)$1	276	132	163	10.4162
fffff[ccc[ddddmmmmdddd]cccfffff	chr9:124064138-124064454(+)$1	316	224	255	13.4722
ffffbbccc[ddddllldddd]ccc333bb2	chr2:216270973-216271230(-)$1	257	51	82	11.5135
gg[ccc[bb!!ddddlllddddbbccc]ggg	chr21:46899888-46900117(+)$1	229	17	48	12.2532
d[a!!ccc[ddddnnnnndddd]ccc]a]dd	chr3:49050512-49050767(+)$1	255	188	219	11.7258
ffff$$$$$eeeeemmmmeeeee333fffff	chr3:186337562-186337773(+)$1	211	127	158	10.0069
!!eeeee"""ddddmmmmdddd333eeeee6	chr12:9242973-9243178(-)$1	205	159	190	14.0222
ddffffff!!ddddnnnnndddd4444ffff	chr20:61457488-61457706(+)$1	218	108	139	11.1606
!!ccc####ddddnnnnndddd4444ccc22	chr20:35826747-35826987(+)$1	240	111	142	12.7853
ddddccc[ddddoooooodddd]ccc22ddd	chr2:216274241-216274478(-)$1	237	197	228	10.7693
d!!ccc[bb!!cccmmmmcccbbccc]dddd	chr14:55034447-55034741(+)$1	294	181	212	11.0895
ggg####bb[ddddmmmmdddd]bb22gggg	chr21:46912503-46912727(+)$1	224	38	69	13.4319
dddd####ddddoooooodddd333dddd22	chr2:216299442-216299646(-)$1	204	106	137	11.4385
ffffff[a!!ddddmmmmddddaffffff::	chr2:216261797-216262028(-)$1	231	132	163	11.0507
####bbccc[ddddlllddddccc]bb333f	chr17:79813228-79813476(-)$1	248	77	108	11.1159
dddd!!ccc[ddddlllddddccc4444ddd	chr1:19487982-19488235(-)$1	253	84	115	12.6209
[dddd[ccc[ddddmmmmdddd]cccdddd3	chr22:36680348-36680592(-)$1	244	207	238	13.6393
ffffff####ddddllldddd4444ffffff	chr2:216243913-216244140(-)$1	227	151	182	13.0043
iiiiii"""bb!!ammmma22bb333iiiii	chr12:46764237-46764459(-)$1	222	16	47	9.9906
eeee[ccc####bbmmmmbb4444ccc]eee	chr14:70235475-70235714(+)$1	239	197	228	10.8280
""ccc####ddddnnnnndddd]ccc22eee	chr3:133475579-133475847(+)$1	268	90	121	12.5351
[eeeee[a"""cccnnnnnccc22a]eeeee	chr8:11702487-11702737(-)$1	250	200	231	10.2093
eeeee!!bb!!ddddllldddd]bb22eeee	chr2:216288015-216288279(-)$1	264	177	208	12.2974
c[a"""bb!!ddddmmmmdddd]bb55555a	chr10:101595754-101595994(+)$1	240	72	103	9.7656
gggg!!bb!!ddddmmmmddddbb22ggggg	chr19:6697256-6697470(-)$1	214	47	78	13.1476
###eeeeea!!cccmmmmccc22a]eeeee3	chr21:46916865-46917093(+)$1	228	176	207	11.0483
ee[ccc[ccc[cccmmmmccc]ccc]ccc]e	chr9:116984402-116984644(+)$1	242	133	164	11.0655
[ccc####ccc[bbmmmmbb]ccc4444ccc	chr3:50112604-50112863(+)$1	259	31	62	10.4678
cc]ffffff:ddddmmmmddddiiiiiiiii	chr10:7791142-7791390(+)$1	248	116	147	10.6476
eeeeeccc!!a[bbmmmmbb]a]ccc22eee	chr19:57325100-57325414(-)$1	314	205	236	10.4109
dd!!dddd!!ddddmmmmdddd333dddd22	chr11:65826883-65827122(+)$1	239	141	172	13.3234
###ccc[ccc[ddddllldddd]ccc]ccc2	chr6:144780232-144780562(+)$1	330	10	41	12.7558
ffffff####ddddllldddd4444ffffff	chr2:216243868-216244113(-)$1	245	124	155	13.0043
#dddd[ccc"""ccclllccc22ccc]dddd	chr2:216283878-216284159(-)$1	281	198	229	10.5741
ddda[ccc!!cccmmmmccc]ccc]a]dddd	chr2:54856107-54856396(+)$1	289	36	67	10.0664
:dddd[ccc[ddddmmmmdddd]cccdddd:	chr3:133472346-133472576(+)$1	230	11	42	11.4934

#otherMatches

#Seq PSSM
GUGCUGGACCCCACCCCUGUGGCAAGAUGCA	chr3:186333402-186333655(+)$1	253	128	159	15.0044
ACCAGAAGUUUGGGUUCUGCCCCAUGGCUGG	chr2:216287972-216288198(-)$1	226	96	127	12.2974
GCCAGCAGACCGCCCAGAGGGCAGGUGAGGU	chr19:6707751-6707983(-)$1	232	149	180	12.6056
GAAAUGGUAUUCAGCUUCCUGGCACUUCUGG	chr2:216236822-216237077(-)$1	255	96	127	12.4645
UCUGAAGGGAUGCUCCAGAGCCCCACCUUCC	chr21:46916893-46917106(+)$1	213	148	179	11.0483
ACUGGCCGGUCUGCAAGUCAGAGGAUGGCCA	chr9:116822408-116822633(-)$1	225	117	148	12.0686
UUUCUUUUUAGGGCAGUAGCUCGCCUGAGCC	chr4:74277700-74277935(+)$1	235	1	32	10.2646
AUUUGGCCACUUUGUAUUCAAUUAGCAAAAU	chr2:198263084-198263307(-)$1	223	169	200	11.7105
GAUGUGUUCUGGGUGUUCAUCCACCAUGUCA	chr3:58067311-58067558(+)$1	247	4	35	10.5353
GGGGUCCUUUAUGAUUAUGUCAACAAGUACC	chr2:21225895-21226131(-)$1	236	72	103	13.2015
CCCCUUCCUCUUCUCUUAGGGUUGGAUGGGC	chr16:30080036-30080308(+)$1	272	83	114	13.3217
CAGGGGAGCAAGGGAGCCCCCGGUCCUGCUG	chr21:46906685-46906924(+)$1	239	86	117	10.7981
GAGAACGGUGUUGUACUCAAGCCAGGUUUUC	chr1:19474956-19475196(-)$1	240	34	65	9.8204
AAUCAGAAUGAACAAAACUGUGGCUGUUCGC	chr19:6696561-6696770(-)$1	209	108	139	10.6502
GGUGGUCUCGUGGGCAAGCCUGCCGAGUUCA	chr3:58108777-58109014(+)$1	237	69	100	11.7257
GGAAGGGCAGCCAUCCUCACGUGGGUUUCUU	chr3:186334187-186334397(+)$1	210	6	37	11.3667
GGUUAAUGCUCUUGGCAAACGAGUCAAACCA	chr2:198264982-198265258(-)$1	276	132	163	10.4162
CUUCACGGGCGACGCCUACGUCAUCCUGAAG	chr9:124064138-124064454(+)$1	316	224	255	13.4722
UCACCAUCAUGUGGACACCGCCUGAGAGUGC	chr2:216270973-216271230(-)$1	257	51	82	11.5135
CUUCCUGUGUUGGCCCUUGGCUCAAGGUGGG	chr21:46899888-46900117(+)$1	229	17	48	12.2532
UGGUGGCUAUGUGUAUACCACAGGGCGUGAU	chr3:49050512-49050767(+)$1	255	188	219	11.7258
GGCAGAGGUUGCAGUGACCUGCAUGGUGUUC	chr3:186337562-186337773(+)$1	211	127	158	10.0069
AGCGCCUCACUGCAUCUGUGCAAACGGGCGG	chr12:9242973-9243178(-)$1	205	159	190	14.0222
CCCUGGGGACCGGGUAAGUCCUGCAGCCCCU	chr20:61457488-61457706(+)$1	218	108	139	11.1606
CGCUGCCCAGGCCAGCCAGGCCCUCUCAGGA	chr20:35826747-35826987(+)$1	240	111	142	12.7853
GCUCAAUAUGUCGCUCAAGACAGGUUCAGGG	chr2:216274241-216274478(-)$1	237	197	228	10.7693
CUAACCAUGAUGUUUCGCGACCAGGUCGGGG	chr14:55034447-55034741(+)$1	294	181	212	11.0895
GUCCGGGCAGGCGCGAGGGUGCGUGAUGACC	chr21:46912503-46912727(+)$1	224	38	69	13.4319
UUAUGACAAUGGAAAACACUAUCAGAUAAAU	chr2:216299442-216299646(-)$1	204	106	137	11.4385
GUGCUCACAGUCUCCUGGGAGAGGAGCACCA	chr2:216261797-216262028(-)$1	231	132	163	11.0507
CCCUGCCUGACGGCGCAGCUGCAGAGUCCUU	chr17:79813228-79813476(-)$1	248	77	108	11.1159
GAGAUUUCCUAUGCCAAGUAUGGAUCCUUCU	chr1:19487982-19488235(-)$1	253	84	115	12.6209
AGGGCAGUGGGGCUGACUGGCUGCACGCCCA	chr22:36680348-36680592(-)$1	244	207	238	13.6393
UGAGCGCCCAGUGGACACCACCCAAUGUUCA	chr2:216243913-216244140(-)$1	227	151	182	13.0043
UAUAUGUUUGGUUAUCGUUUUCCCUCUAUGU	chr12:46764237-46764459(-)$1	222	16	47	9.9906
AGGAGUCAUUAGCAGUGAUGAUUUUGGGUCC	chr14:70235475-70235714(+)$1	239	197	228	10.8280
CCCAGAGAACUUGGCAAACAAGGCUGACAGG	chr3:133475579-133475847(+)$1	268	90	121	12.5351
GUCUGAAGGACUGGAUUGGCCAAACAUCAGA	chr8:11702487-11702737(-)$1	250	200	231	10.2093
ACCAGAAGUUUGGGUUCUGCCCCAUGGCUGG	chr2:216288015-216288279(-)$1	264	177	208	12.2974
UUCUUUACUUUUUGUGUCCAGAUGUUUUAUG	chr10:101595754-101595994(+)$1	240	72	103	9.7656
GUGGAAGUCAAGGCUGCUGUCUACCAUCAUU	chr19:6697256-6697470(-)$1	214	47	78	13.1476
UCUGAAGGGAUGCUCCAGAGCCCCACCUUCC	chr21:46916865-46917093(+)$1	228	176	207	11.0483
CCCGGCCUCAUUGUAAGUACAUUGAUGCCUG	chr9:116984402-116984644(+)$1	242	133	164	11.0655
AUCGUAAACUUGUUGAUAAAGAAGAUAUCGA	chr3:50112604-50112863(+)$1	259	31	62	10.4678
UUCGUGCCUCAGCUCUACAGCUUUCUCAAAC	chr10:7791142-7791390(+)$1	248	116	147	10.6476
AGCCUGCAAAUGCCUUUGGGGAGUGCUCAGG	chr19:57325100-57325414(-)$1	314	205	236	10.4109
UUGCGCCGAAUGAACCGCUUCACUGUGGCUG	chr11:65826883-65827122(+)$1	239	141	172	13.3234
CCUGAUUAACUUCCUGUGAGGAUGUUCAUCU	chr6:144780232-144780562(+)$1	330	10	41	12.7558
UGAGCGCCCAGUGGACACCACCCAAUGUUCA	chr2:216243868-216244113(-)$1	245	124	155	13.0043
AGUAGCUCUAUUACUGCAAGUUGAGAACUGC	chr2:216283878-216284159(-)$1	281	198	229	10.5741
CAGCUGGCGGCUGAGCGCAGGGCCCGUCUGG	chr2:54856107-54856396(+)$1	289	36	67	10.0664
GCCACUCUCUACUUGUGUGGGUUGAGGUGGG	chr3:133472346-133472576(+)$1	230	11	42	11.4934

#DB
((((((.((.((((....))))...).).))	chr3:186333402-186333655(+)$1	1	128	159	15.0044
(((((..((..((((...)))).))..))))	chr2:216287972-216288198(-)$1	1	96	127	12.2974
((.(.(..(((((((...)))).)))..).)	chr19:6707751-6707983(-)$1	1	149	180	12.6056
(((.((....((((....)))))).))))))	chr2:216236822-216237077(-)$1	1	96	127	12.4645
...((((((..(((....)))..).))))).	chr21:46916893-46917106(+)$1	1	148	179	11.0483
.(((((((.((((.....))))...))))))	chr9:116822408-116822633(-)$1	1	117	148	12.0686
...(((....((((....))))....)))..	chr4:74277700-74277935(+)$1	1	1	32	10.2646
((((.((....(((....)))...)).))))	chr2:198263084-198263307(-)$1	1	169	200	11.7105
((((((...(((((....))))).)))))))	chr3:58067311-58067558(+)$1	1	4	35	10.5353
(.(((.(((..((((...))))..))).)))	chr2:21225895-21226131(-)$1	1	72	103	13.2015
((((.(((..((((...))))..))).))).	chr16:30080036-30080308(+)$1	1	83	114	13.3217
(((((((.(..(((....)))).)))).)))	chr21:46906685-46906924(+)$1	1	86	117	10.7981
(((((((((.(((....))))))..))))))	chr1:19474956-19475196(-)$1	1	34	65	9.8204
((.(((.....(((....)))..)))))).(	chr19:6696561-6696770(-)$1	1	108	139	10.6502
(((((.((((((((....)))).)))).)))	chr3:58108777-58109014(+)$1	1	69	100	11.7257
(((((((.(.((((......)))).).))))	chr3:186334187-186334397(+)$1	1	6	37	11.3667
((((..((..((((.....)))).)))))))	chr2:198264982-198265258(-)$1	1	132	163	10.4162
(((((.(((.((((....)))).))))))))	chr9:124064138-124064454(+)$1	1	224	255	13.4722
(((((((((.((((...)))).)))...)).	chr2:216270973-216271230(-)$1	1	51	82	11.5135
((.(((.((..((((...))))))))).)))	chr21:46899888-46900117(+)$1	1	17	48	12.2532
(.(..(((.((((.....)))).))).).))	chr3:49050512-49050767(+)$1	1	188	219	11.7258
((((.....(((((....)))))...)))))	chr3:186337562-186337773(+)$1	1	127	158	10.0069
..(((((...((((....))))...))))).	chr12:9242973-9243178(-)$1	1	159	190	14.0222
((((((((..((((.....))))....))))	chr20:61457488-61457706(+)$1	1	108	139	11.1606
..(((....((((.....))))....)))..	chr20:35826747-35826987(+)$1	1	111	142	12.7853
(((((((.((((......)))).)))..)))	chr2:216274241-216274478(-)$1	1	197	228	10.7693
(..(((.((..(((....)))))))).))))	chr14:55034447-55034741(+)$1	1	181	212	11.0895
(((....((.((((....)))).))..))))	chr21:46912503-46912727(+)$1	1	38	69	13.4319
((((....((((......))))...))))..	chr2:216299442-216299646(-)$1	1	106	137	11.4385
((((((.(..((((....)))))))))))..	chr2:216261797-216262028(-)$1	1	132	163	11.0507
....(((((.((((...))))))).))...)	chr17:79813228-79813476(-)$1	1	77	108	11.1159
((((..(((.((((...)))))))....)))	chr1:19487982-19488235(-)$1	1	84	115	12.6209
.((((.(((.((((....)))).))))))).	chr22:36680348-36680592(-)$1	1	207	238	13.6393
((((((....((((...))))....))))))	chr2:216243913-216244140(-)$1	1	151	182	13.0043
((((((...((..(....)..))...)))))	chr12:46764237-46764459(-)$1	1	16	47	9.9906
((((.(((....((....))....))).)))	chr14:70235475-70235714(+)$1	1	197	228	10.8280
..(((....((((.....)))).)))..)))	chr3:133475579-133475847(+)$1	1	90	121	12.5351
.(((((.(...(((.....)))..).)))))	chr8:11702487-11702737(-)$1	1	200	231	10.2093
(((((..((..((((...)))).))..))))	chr2:216288015-216288279(-)$1	1	177	208	12.2974
(.(...((..((((....)))).)).....)	chr10:101595754-101595994(+)$1	1	72	103	9.7656
((((..((..((((....))))))..)))))	chr19:6697256-6697470(-)$1	1	47	78	13.1476
...((((((..(((....)))..).))))).	chr21:46916865-46917093(+)$1	1	176	207	11.0483
((.(((.(((.(((....))).))).))).)	chr9:116984402-116984644(+)$1	1	133	164	11.0655
.(((....(((.((....)).)))....)))	chr3:50112604-50112863(+)$1	1	31	62	10.4678
)).)))))).((((....))))(((((((((	chr10:7791142-7791390(+)$1	1	116	147	10.6476
((((((((..(.((....)).).)))..)))	chr19:57325100-57325414(-)$1	1	205	236	10.4109
((..((((..((((....))))...))))..	chr11:65826883-65827122(+)$1	1	141	172	13.3234
...(((.(((.((((...)))).))).))).	chr6:144780232-144780562(+)$1	1	10	41	12.7558
((((((....((((...))))....))))))	chr2:216243868-216244113(-)$1	1	124	155	13.0043
.((((.(((...(((...)))..))).))))	chr2:216283878-216284159(-)$1	1	198	229	10.5741
((((.(((..(((....))).))).).))))	chr2:54856107-54856396(+)$1	1	36	67	10.0664
.((((.(((.((((....)))).))))))).	chr3:133472346-133472576(+)$1	1	11	42	11.4934

#PSSM
d : 0.17	f : 0.15	e : 0.13	c : 0.11	g : 0.09	# : 0.09	[ : 0.07	i : 0.05	: : 0.03	! : 0.03	" : 0.01	
d : 0.19	e : 0.15	f : 0.15	g : 0.11	c : 0.09	# : 0.07	i : 0.05	[ : 0.05	! : 0.05	: : 0.01	" : 0.01	
f : 0.17	d : 0.15	e : 0.13	c : 0.11	g : 0.09	[ : 0.07	# : 0.07	i : 0.05	a : 0.03	! : 0.03	: : 0.01	] : 0.01	
c : 0.21	f : 0.19	e : 0.17	d : 0.13	g : 0.07	i : 0.05	a : 0.03	! : 0.03	# : 0.03	[ : 0.01	" : 0.01	
c : 0.19	e : 0.15	f : 0.11	[ : 0.09	d : 0.09	! : 0.07	g : 0.05	b : 0.05	i : 0.05	# : 0.05	$ : 0.01	" : 0.01	
c : 0.23	[ : 0.11	! : 0.09	f : 0.09	# : 0.09	b : 0.07	e : 0.07	g : 0.05	i : 0.05	d : 0.03	a : 0.01	$ : 0.01	" : 0.01	
c : 0.28	# : 0.17	[ : 0.13	b : 0.07	! : 0.05	e : 0.05	d : 0.05	" : 0.03	$ : 0.03	f : 0.03	g : 0.01	i : 0.01	
c : 0.30	# : 0.17	b : 0.15	a : 0.05	" : 0.05	[ : 0.05	e : 0.03	$ : 0.03	d : 0.03	f : 0.03	! : 0.01	g : 0.01	
c : 0.24	! : 0.17	# : 0.15	a : 0.09	b : 0.09	" : 0.07	d : 0.05	[ : 0.03	$ : 0.03	f : 0.01	
! : 0.32	[ : 0.19	d : 0.13	# : 0.11	c : 0.07	" : 0.05	e : 0.03	$ : 0.01	b : 0.01	: : 0.01	
d : 0.55	! : 0.15	c : 0.07	# : 0.03	e : 0.03	" : 0.03	[ : 0.03	$ : 0.01	b : 0.01	a : 0.01	
d : 0.67	c : 0.19	e : 0.03	[ : 0.03	! : 0.01	# : 0.01	" : 0.01	
d : 0.63	c : 0.21	b : 0.05	e : 0.03	o : 0.03	! : 0.01	
d : 0.55	c : 0.17	n : 0.07	b : 0.05	e : 0.03	m : 0.03	o : 0.03	a : 0.01	
m : 0.55	n : 0.13	d : 0.11	l : 0.11	o : 0.05	c : 0.01	
m : 0.55	l : 0.24	n : 0.13	o : 0.05	
m : 0.55	l : 0.24	n : 0.13	o : 0.05	
m : 0.51	l : 0.13	n : 0.13	d : 0.11	o : 0.05	c : 0.03	
d : 0.61	c : 0.19	n : 0.05	b : 0.05	e : 0.03	o : 0.01	a : 0.01	
d : 0.65	c : 0.21	b : 0.05	e : 0.03	o : 0.01	2 : 0.01	
d : 0.67	c : 0.19	] : 0.05	e : 0.03	2 : 0.01	4 : 0.01	
d : 0.55	c : 0.11	2 : 0.09	4 : 0.05	e : 0.03	a : 0.03	] : 0.03	b : 0.03	3 : 0.01	
] : 0.28	2 : 0.13	c : 0.13	3 : 0.11	b : 0.09	4 : 0.09	d : 0.05	e : 0.03	a : 0.01	i : 0.01	
c : 0.36	3 : 0.15	b : 0.13	4 : 0.11	2 : 0.05	d : 0.05	a : 0.03	] : 0.03	f : 0.01	i : 0.01	
c : 0.34	3 : 0.13	4 : 0.13	b : 0.11	] : 0.11	i : 0.03	d : 0.03	2 : 0.03	f : 0.01	a : 0.01	
c : 0.30	d : 0.09	4 : 0.09	2 : 0.07	a : 0.05	e : 0.05	b : 0.05	3 : 0.05	f : 0.05	g : 0.03	i : 0.03	] : 0.03	5 : 0.01	
] : 0.17	2 : 0.13	d : 0.13	c : 0.13	f : 0.11	e : 0.07	g : 0.05	i : 0.05	4 : 0.05	3 : 0.01	b : 0.01	5 : 0.01	
d : 0.15	f : 0.15	e : 0.11	c : 0.11	] : 0.09	2 : 0.07	g : 0.07	i : 0.07	a : 0.03	3 : 0.03	4 : 0.03	5 : 0.01	
e : 0.19	d : 0.19	c : 0.17	f : 0.15	g : 0.09	i : 0.07	] : 0.03	a : 0.01	b : 0.01	3 : 0.01	5 : 0.01	
e : 0.19	d : 0.15	f : 0.13	g : 0.11	c : 0.09	i : 0.07	: : 0.05	2 : 0.05	] : 0.03	a : 0.01	b : 0.01	3 : 0.01	5 : 0.01	
e : 0.15	d : 0.15	f : 0.15	g : 0.11	2 : 0.11	i : 0.07	3 : 0.05	: : 0.05	c : 0.05	a : 0.03	6 : 0.01	

#score	608.0332845234348
#seq	52
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_transcript_m1_run2.txt

#BEAR
ffffffwwwwwwwwwwwwwwffff	chr6:114277268-114277522(-)$1	254	133	157	23.1522
gggggguuuuuuuuuuuugggggg	chr10:96373211-96373468(+)$1	257	213	237	24.2826
ffffffvvvvvvvvvvvvvfffff	chr13:113471892-113472273(+)$1	381	148	172	24.8796
c!!cccvvvvvvvvvvvvvccc]c	chr10:124915173-124915392(+)$1	219	74	98	24.5778
gg!!ccctttttttttttccc]gg	chr15:63970852-63971149(-)$1	297	185	209	23.6770
fff[ccctttttttttttccc]ff	chr17:47393387-47393648(-)$1	261	143	167	23.7734
ffffffwwwwwwwwwwwwwwffff	chr1:227206243-227206519(-)$1	276	51	75	23.1522
ccc[bbvvvvvvvvvvvvvbb]cc	chr5:137904829-137905061(-)$1	232	38	62	23.6419
[eeeeeuuuuuuuuuuuueeeee]	chr10:93710895-93711229(+)$1	334	209	233	23.4895
ff[cccuuuuuuuuuuuuccc]ff	chr7:131148027-131148355(+)$1	328	122	146	24.6934
hhhhhhuuuuuuuuuuuuhhhhhh	chr2:32765764-32766058(+)$1	294	68	92	21.7678
eeeebbvvvvvvvvvvvvvbb]ee	chr7:129281203-129281602(+)$1	399	21	45	23.4568
==[cccvvvvvvvvvvvvvccc]=	chr1:22077695-22077945(-)$1	250	135	159	24.8143
=!!cccvvvvvvvvvvvvvccc33	chr15:77759230-77759525(+)$1	295	227	251	24.5042
""dddduuuuuuuuuuuudddd33	chr7:156639608-156639902(-)$1	294	113	137	22.2926
ffffffvvvvvvvvvvvvvfffff	chr2:209176795-209177046(+)$1	251	76	100	24.8796
dd!!bbvvvvvvvvvvvvvbb22d	chr2:183833997-183834276(-)$1	279	38	62	22.6944
$$$ccctttttttttttccc22ee	chr5:134682220-134682469(-)$1	249	36	60	21.1638
iiiiwwwwwwwwwwwwwwiiiiii	chr12:80324915-80325183(-)$1	268	7	31	22.1841
ffffffuuuuuuuuuuuuffffff	chr7:135282087-135282366(+)$1	279	129	153	24.3925
======uuuuuuuuuuuu======	chr7:77341885-77342173(+)$1	288	178	202	24.2017
cc[a[bbtttttttttttbb]a]c	chr9:134066321-134066553(+)$1	232	122	146	21.9924
bb!!ccctttttttttttccc22b	chr7:141441461-141441739(+)$1	278	137	161	22.1074
ffffffuuuuuuuuuuuuffffff	chr3:14509366-14509651(+)$1	285	207	231	24.3925
cfffffftttttttttttffffff	chrX:149881503-149881813(+)$1	310	151	175	23.3416
ff!!bbtttttttttttbb22fff	chr8:103309159-103309414(-)$1	255	190	214	21.5560
ffffffvvvvvvvvvvvvvfffff	chr7:119385711-119385924(-)$1	213	159	183	24.8796
iiiiiiitttttttttttiiiiii	chr14:52949200-52949519(-)$1	319	209	233	22.7406
iiiiwwwwwwwwwwwwwwiiiiii	chr6:31797511-31797767(+)$1	256	171	195	22.1841
:eeeeettttttttttteeeeeff	chr5:179047262-179047504(-)$1	242	58	82	21.0114
gggggguuuuuuuuuuuugggggg	chr4:128935539-128935812(+)$1	273	197	221	24.2826
+++cccuuuuuuuuuuuuccciii	chr8:141855892-141856188(-)$1	296	108	132	21.8971
ffffffuuuuuuuuuuuuffffff	chr11:28149452-28149704(+)$1	252	67	91	24.3925
==dddduuuuuuuuuuuuddddFF	chr13:53006998-53007285(-)$1	287	105	129	21.8826
ffffbbwwwwwwwwwwwwwwbb]f	chr4:124023631-124023917(+)$1	286	189	213	22.1445
ffffffvvvvvvvvvvvvvfffff	chr5:145103338-145103602(-)$1	264	218	242	24.8796
Efffffftttttttttttffffff	chr11:14517712-14517965(-)$1	253	221	245	22.2655
[ddddvvvvvvvvvvvvvddddaf	chr12:69108210-69108464(+)$1	254	115	139	22.3943
iiiiiawwwwwwwwwwwwwwa]ii	chr2:181849733-181850026(+)$1	293	87	111	22.7883
!fffffftttttttttttffffff	chr6:89554245-89554544(-)$1	299	264	288	23.4152
hhhhwwwwwwwwwwwwwwhhhhhh	chrX:73193970-73194212(+)$1	242	63	87	20.2398
"eeeeeuuuuuuuuuuuueeeee4	chr4:154509582-154509998(+)$1	416	163	187	23.1653
eeeebbvvvvvvvvvvvvvbb22e	chr11:5367087-5367350(-)$1	263	218	242	22.9963
ffffffuuuuuuuuuuuuffffff	chr4:140283063-140283306(+)$1	243	155	179	24.3925
Efffffftttttttttttffffff	chr12:49843571-49843942(+)$1	371	287	311	22.2655
[eeeeevvvvvvvvvvvvveeeee	chr1:156305263-156305527(-)$1	264	202	226	23.9446
#eeeeettttttttttteeeee]e	chr17:3727911-3728134(-)$1	223	156	180	21.8568
hheeeeettttttttttteeeee:	chr7:135084564-135084866(-)$1	302	177	201	20.7848
eeeeewwwwwwwwwwwwwweeeee	chr3:28336120-28336396(+)$1	276	195	219	22.0415
cc[cccvvvvvvvvvvvvvccc]c	chr18:13095986-13096243(+)$1	257	101	125	24.6378
hhhhhhvvvvvvvvvvvvvhhhhh	chr3:171420723-171421050(-)$1	327	154	178	22.4896
ffffffuuuuuuuuuuuuffffff	chr2:58419490-58419835(-)$1	345	186	210	24.3925
gggggggtttttttttttgggggg	chr3:42835459-42835733(-)$1	274	200	224	23.1187
fff[bbtttttttttttbb]ffff	chr6:111710016-111710391(-)$1	375	227	251	22.2509
"eeeeeuuuuuuuuuuuueeeee2	chr17:26441060-26441389(+)$1	329	263	287	23.0273
ffffffwwwwwwwwwwwwwwffff	chrX:65434981-65435298(+)$1	317	204	228	23.1522
fffcccuuuuuuuuuuuuccc]ff	chr1:225610090-225610391(-)$1	301	102	126	24.6095
[addddwwwwwwwwwwwwwwdddd	chr10:32101818-32102051(-)$1	233	124	148	21.1267
gggggggtttttttttttgggggg	chr12:14955649-14955950(-)$1	301	72	96	23.1187
hhhhhhvvvvvvvvvvvvvhhhhh	chr18:246063-246315(-)$1	252	49	73	22.4896
ddddccctttttttttttccc]dd	chr10:32572857-32573146(-)$1	289	108	132	22.1393
gggggggtttttttttttgggggg	chr10:76074724-76075020(+)$1	296	185	209	23.1187
"eeeeeuuuuuuuuuuuueeeee]	chr6:163948231-163948501(+)$1	270	135	159	23.3400
hh[cccuuuuuuuuuuuuccc]hh	chr16:47462506-47462766(-)$1	260	185	209	23.6876
ffffffvvvvvvvvvvvvvfffff	chr8:90737879-90738173(-)$1	294	128	152	24.8796
======uuuuuuuuuuuu======	chr4:154546989-154547365(+)$1	376	241	265	24.2017

#otherMatches

#Seq PSSM
GUAGUGUUUUUGUCUCAUUCUACU	chr6:114277268-114277522(-)$1	254	133	157	23.1522
gguauauucuuuuaaaauuguauc	chr10:96373211-96373468(+)$1	257	213	237	24.2826
AGUUGUGGAAGAUGUUAAAACAGC	chr13:113471892-113472273(+)$1	381	148	172	24.8796
UGUGACCAUAUCUUUACCAGUUUG	chr10:124915173-124915392(+)$1	219	74	98	24.5778
ACUUUUGCACCCCUUGAACAAUGU	chr15:63970852-63971149(-)$1	297	185	209	23.6770
GAUAGGUUAAAGAGGUAUGCUAAU	chr17:47393387-47393648(-)$1	261	143	167	23.7734
gcacuggaagaccaaaaaaauagu	chr1:227206243-227206519(-)$1	276	51	75	23.1522
gcugcaAAAAUCUUCUGCCUGGGG	chr5:137904829-137905061(-)$1	232	38	62	23.6419
UAUUAGAAAACUUCUUAACUGAUU	chr10:93710895-93711229(+)$1	334	209	233	23.4895
UCCCAAUGUAAUAAUUAUUUGAGG	chr7:131148027-131148355(+)$1	328	122	146	24.6934
uauagcucuagcauacuugcugua	chr2:32765764-32766058(+)$1	294	68	92	21.7678
GGAUUGUAAAUACCCCCUUCACGU	chr7:129281203-129281602(+)$1	399	21	45	23.4568
GCUUAUUUCAAGUUAUUUUAUAUG	chr1:22077695-22077945(-)$1	250	135	159	24.8143
UGGUCCAAAGGAAGAAAGAGGAAG	chr15:77759230-77759525(+)$1	295	227	251	24.5042
cuauauuuauauuugucuguguuu	chr7:156639608-156639902(-)$1	294	113	137	22.2926
GGCGUAUUCUCUAUAUAAUUAUGC	chr2:209176795-209177046(+)$1	251	76	100	24.8796
gguacauuauuagguuauuugguc	chr2:183833997-183834276(-)$1	279	38	62	22.6944
UAUAGAACACAGAUUAAUCUUUAA	chr5:134682220-134682469(-)$1	249	36	60	21.1638
CAAGCCUCAUUUCCAUUUUUUGGG	chr12:80324915-80325183(-)$1	268	7	31	22.1841
UAAGAAGUCUAUGAAUCAUUCUUA	chr7:135282087-135282366(+)$1	279	129	153	24.3925
aauauauuuaacugauacuguauu	chr7:77341885-77342173(+)$1	288	178	202	24.2017
CCCUGUGUUUGUUUAUUUUAGAAG	chr9:134066321-134066553(+)$1	232	122	146	21.9924
GUUGGAUUUACAAAUAUUAUCAUA	chr7:141441461-141441739(+)$1	278	137	161	22.1074
CCCUGACAUAUGUGUAACUUAGGG	chr3:14509366-14509651(+)$1	285	207	231	24.3925
GGAAUCAUUUUCUUUCAUUGAUUC	chrX:149881503-149881813(+)$1	310	151	175	23.3416
UCUUAAUUUUAGGAUAUUUUUGAG	chr8:103309159-103309414(-)$1	255	190	214	21.5560
uguagauacuuugggauuuucuac	chr7:119385711-119385924(-)$1	213	159	183	24.8796
AAAUUGUGACUCACGCUAAUGAUU	chr14:52949200-52949519(-)$1	319	209	233	22.7406
UGAGGUGGACUGUUGGGACUCAAG	chr6:31797511-31797767(+)$1	256	171	195	22.1841
AAAGUCGGUUUAUGAAAGACUUGG	chr5:179047262-179047504(-)$1	242	58	82	21.0114
AAUAUAAUAAUGGCCCUAUGUAUU	chr4:128935539-128935812(+)$1	273	197	221	24.2826
UACAGCUGCCUAUAAAUUGCUUAU	chr8:141855892-141856188(-)$1	296	108	132	21.8971
UUACCACCAUUCAGAGACUGGUAA	chr11:28149452-28149704(+)$1	252	67	91	24.3925
UUCCAUGUUUAUAUAAAAAUGGUC	chr13:53006998-53007285(-)$1	287	105	129	21.8826
GUAGCCAAAACCUAAAUCUGGGAC	chr4:124023631-124023917(+)$1	286	189	213	22.1445
guuguaagaaaaaugcacauacaa	chr5:145103338-145103602(-)$1	264	218	242	24.8796
CUUAAACUGAUAAAUAUUGUUUAA	chr11:14517712-14517965(-)$1	253	221	245	22.2655
UGAAUUGAUCUAUUAUGUAUUCCA	chr12:69108210-69108464(+)$1	254	115	139	22.3943
AGUUGCUUCUUAUUGUGUAUGUUA	chr2:181849733-181850026(+)$1	293	87	111	22.7883
UGUUAGUGUUGAAAUUUAACUAAU	chr6:89554245-89554544(-)$1	299	264	288	23.4152
ggaauuuuccagauuuuuuuuuuu	chrX:73193970-73194212(+)$1	242	63	87	20.2398
AAAAAUGUUCCAAGUAUAAUUUUG	chr4:154509582-154509998(+)$1	416	163	187	23.1653
CAGUCCUAGGACAGAAUAUGGAUG	chr11:5367087-5367350(-)$1	263	218	242	22.9963
UAAACAACAAAAGAAAAAUGUUUA	chr4:140283063-140283306(+)$1	243	155	179	24.3925
cuaagcccuuuuuuuauugguuug	chr12:49843571-49843942(+)$1	371	287	311	22.2655
cauaaguacuuuauucccuuuugu	chr1:156305263-156305527(-)$1	264	202	226	23.9446
UUUCAGCCAGUUACCAUCUGAAUU	chr17:3727911-3728134(-)$1	223	156	180	21.8568
UUUGUACUUACCUUAUUUGUGCAC	chr7:135084564-135084866(-)$1	302	177	201	20.7848
UUGUCAUUCUAAAACAUCAGACAG	chr3:28336120-28336396(+)$1	276	195	219	22.0415
UAUAUCUAUUUAGGGUUCUGGUUU	chr18:13095986-13096243(+)$1	257	101	125	24.6378
auaacguuuuucuccuuuuuguug	chr3:171420723-171421050(-)$1	327	154	178	22.4896
ggugauuaauuuuccuuugucacc	chr2:58419490-58419835(-)$1	345	186	210	24.3925
UGAGAUUGGCAUGAUAUAAAUCUC	chr3:42835459-42835733(-)$1	274	200	224	23.1187
GUACAGCCACUAUUUAUCUUUACA	chr6:111710016-111710391(-)$1	375	227	251	22.2509
uuugacuuaauagauaaugucaac	chr17:26441060-26441389(+)$1	329	263	287	23.0273
UGAGAGUUUUAUUCUUCUAUCUCU	chrX:65434981-65435298(+)$1	317	204	228	23.1522
UGUUAAUUAUUACCCUUCUUGCAU	chr1:225610090-225610391(-)$1	301	102	126	24.6095
UCUGUGUUAAUGUAAUUCUUCACA	chr10:32101818-32102051(-)$1	233	124	148	21.1267
UUGUAGACAAAAAACUAAUCUGCA	chr12:14955649-14955950(-)$1	301	72	96	23.1187
UUAGCUGACAGCCUUUCUAAGUUA	chr18:246063-246315(-)$1	252	49	73	22.4896
CUUAGCUGUCUGUUUUAAAGCAUA	chr10:32572857-32573146(-)$1	289	108	132	22.1393
AAAGUUUUUAACGUAAUUAAACUU	chr10:76074724-76075020(+)$1	296	185	209	23.1187
UAAUAUGUCUAAGCUUUAAUAUUU	chr6:163948231-163948501(+)$1	270	135	159	23.3400
UGAUUUGGAAACAUGGAAAAAGUA	chr16:47462506-47462766(-)$1	260	185	209	23.6876
CCAGAUUCUGUAUUUUCCUAUCUG	chr8:90737879-90738173(-)$1	294	128	152	24.8796
UUUAAUACCGAAUAUACAGUUGAA	chr4:154546989-154547365(+)$1	376	241	265	24.2017

#DB
((((((..............))))	chr6:114277268-114277522(-)$1	1	133	157	23.1522
((((((............))))))	chr10:96373211-96373468(+)$1	1	213	237	24.2826
((((((.............)))))	chr13:113471892-113472273(+)$1	1	148	172	24.8796
(..(((.............))).)	chr10:124915173-124915392(+)$1	1	74	98	24.5778
((..(((...........))).))	chr15:63970852-63971149(-)$1	1	185	209	23.6770
(((.(((...........))).))	chr17:47393387-47393648(-)$1	1	143	167	23.7734
((((((..............))))	chr1:227206243-227206519(-)$1	1	51	75	23.1522
(((.((.............)).))	chr5:137904829-137905061(-)$1	1	38	62	23.6419
.(((((............))))).	chr10:93710895-93711229(+)$1	1	209	233	23.4895
((.(((............))).))	chr7:131148027-131148355(+)$1	1	122	146	24.6934
((((((............))))))	chr2:32765764-32766058(+)$1	1	68	92	21.7678
((((((.............)).))	chr7:129281203-129281602(+)$1	1	21	45	23.4568
((.(((.............))).)	chr1:22077695-22077945(-)$1	1	135	159	24.8143
(..(((.............)))..	chr15:77759230-77759525(+)$1	1	227	251	24.5042
..((((............))))..	chr7:156639608-156639902(-)$1	1	113	137	22.2926
((((((.............)))))	chr2:209176795-209177046(+)$1	1	76	100	24.8796
((..((.............))..)	chr2:183833997-183834276(-)$1	1	38	62	22.6944
...(((...........)))..))	chr5:134682220-134682469(-)$1	1	36	60	21.1638
((((..............))))))	chr12:80324915-80325183(-)$1	1	7	31	22.1841
((((((............))))))	chr7:135282087-135282366(+)$1	1	129	153	24.3925
((((((............))))))	chr7:77341885-77342173(+)$1	1	178	202	24.2017
((.(.((...........)).).)	chr9:134066321-134066553(+)$1	1	122	146	21.9924
((..(((...........)))..)	chr7:141441461-141441739(+)$1	1	137	161	22.1074
((((((............))))))	chr3:14509366-14509651(+)$1	1	207	231	24.3925
)((((((...........))))))	chrX:149881503-149881813(+)$1	1	151	175	23.3416
((..((...........))..)))	chr8:103309159-103309414(-)$1	1	190	214	21.5560
((((((.............)))))	chr7:119385711-119385924(-)$1	1	159	183	24.8796
(((((((...........))))))	chr14:52949200-52949519(-)$1	1	209	233	22.7406
((((..............))))))	chr6:31797511-31797767(+)$1	1	171	195	22.1841
.(((((...........)))))((	chr5:179047262-179047504(-)$1	1	58	82	21.0114
((((((............))))))	chr4:128935539-128935812(+)$1	1	197	221	24.2826
...(((............))))))	chr8:141855892-141856188(-)$1	1	108	132	21.8971
((((((............))))))	chr11:28149452-28149704(+)$1	1	67	91	24.3925
))((((............))))))	chr13:53006998-53007285(-)$1	1	105	129	21.8826
((((((..............)).)	chr4:124023631-124023917(+)$1	1	189	213	22.1445
((((((.............)))))	chr5:145103338-145103602(-)$1	1	218	242	24.8796
)((((((...........))))))	chr11:14517712-14517965(-)$1	1	221	245	22.2655
.((((.............))))))	chr12:69108210-69108464(+)$1	1	115	139	22.3943
((((((..............).))	chr2:181849733-181850026(+)$1	1	87	111	22.7883
.((((((...........))))))	chr6:89554245-89554544(-)$1	1	264	288	23.4152
((((..............))))))	chrX:73193970-73194212(+)$1	1	63	87	20.2398
.(((((............))))).	chr4:154509582-154509998(+)$1	1	163	187	23.1653
((((((.............))..)	chr11:5367087-5367350(-)$1	1	218	242	22.9963
((((((............))))))	chr4:140283063-140283306(+)$1	1	155	179	24.3925
(((((((...........))))))	chr12:49843571-49843942(+)$1	1	287	311	22.2655
.(((((.............)))))	chr1:156305263-156305527(-)$1	1	202	226	23.9446
.(((((...........))))).)	chr17:3727911-3728134(-)$1	1	156	180	21.8568
))(((((...........))))).	chr7:135084564-135084866(-)$1	1	177	201	20.7848
(((((..............)))))	chr3:28336120-28336396(+)$1	1	195	219	22.0415
((.(((.............))).)	chr18:13095986-13096243(+)$1	1	101	125	24.6378
((((((.............)))))	chr3:171420723-171421050(-)$1	1	154	178	22.4896
((((((............))))))	chr2:58419490-58419835(-)$1	1	186	210	24.3925
(((((((...........))))))	chr3:42835459-42835733(-)$1	1	200	224	23.1187
(((.((...........)).))))	chr6:111710016-111710391(-)$1	1	227	251	22.2509
.(((((............))))).	chr17:26441060-26441389(+)$1	1	263	287	23.0273
((((((..............))))	chrX:65434981-65435298(+)$1	1	204	228	23.1522
((((((............))).))	chr1:225610090-225610391(-)$1	1	102	126	24.6095
.(((((..............))))	chr10:32101818-32102051(-)$1	1	124	148	21.1267
(((((((...........))))))	chr12:14955649-14955950(-)$1	1	72	96	23.1187
((((((.............)))))	chr18:246063-246315(-)$1	1	49	73	22.4896
(((((((...........))).))	chr10:32572857-32573146(-)$1	1	108	132	22.1393
(((((((...........))))))	chr10:76074724-76075020(+)$1	1	185	209	23.1187
.(((((............))))).	chr6:163948231-163948501(+)$1	1	135	159	23.3400
((.(((............))).))	chr16:47462506-47462766(-)$1	1	185	209	23.6876
((((((.............)))))	chr8:90737879-90738173(-)$1	1	128	152	24.8796
((((((............))))))	chr4:154546989-154547365(+)$1	1	241	265	24.2017

#PSSM
f : 0.28	g : 0.09	h : 0.09	c : 0.07	= : 0.07	[ : 0.06	" : 0.06	i : 0.06	e : 0.04	d : 0.03	E : 0.03	$ : 0.01	b : 0.01	: : 0.01	+ : 0.01	! : 0.01	# : 0.01	
f : 0.34	e : 0.15	g : 0.09	h : 0.09	= : 0.06	i : 0.06	c : 0.04	d : 0.04	! : 0.03	" : 0.01	$ : 0.01	b : 0.01	+ : 0.01	a : 0.01	
f : 0.31	e : 0.16	! : 0.09	g : 0.07	[ : 0.07	d : 0.07	h : 0.06	i : 0.06	= : 0.03	c : 0.01	$ : 0.01	+ : 0.01	
f : 0.27	e : 0.16	c : 0.13	g : 0.07	d : 0.07	! : 0.06	h : 0.06	i : 0.06	[ : 0.04	= : 0.03	a : 0.01	
f : 0.25	c : 0.19	e : 0.13	b : 0.10	g : 0.07	d : 0.06	h : 0.04	w : 0.04	= : 0.03	i : 0.03	[ : 0.01	
f : 0.25	c : 0.19	b : 0.12	e : 0.12	g : 0.07	w : 0.06	h : 0.04	d : 0.04	= : 0.03	i : 0.01	v : 0.01	a : 0.01	
u : 0.30	v : 0.25	w : 0.15	t : 0.07	c : 0.06	f : 0.06	g : 0.04	b : 0.01	i : 0.01	e : 0.01	
u : 0.30	t : 0.28	v : 0.25	w : 0.15	
u : 0.30	t : 0.28	v : 0.25	w : 0.15	
u : 0.30	t : 0.28	v : 0.25	w : 0.15	
u : 0.30	t : 0.28	v : 0.25	w : 0.15	
u : 0.30	t : 0.28	v : 0.25	w : 0.15	
u : 0.30	t : 0.28	v : 0.25	w : 0.15	
u : 0.30	t : 0.28	v : 0.25	w : 0.15	
u : 0.30	t : 0.28	v : 0.25	w : 0.15	
u : 0.30	t : 0.28	v : 0.25	w : 0.15	
u : 0.30	t : 0.28	v : 0.25	w : 0.15	
u : 0.30	v : 0.25	t : 0.21	w : 0.15	b : 0.03	e : 0.03	c : 0.01	
v : 0.24	c : 0.13	f : 0.13	w : 0.10	e : 0.10	g : 0.07	d : 0.04	i : 0.04	b : 0.04	h : 0.03	= : 0.03	
f : 0.21	c : 0.19	e : 0.13	w : 0.09	g : 0.07	b : 0.07	h : 0.06	d : 0.04	i : 0.04	= : 0.03	2 : 0.01	] : 0.01	
f : 0.27	c : 0.18	e : 0.13	g : 0.07	b : 0.07	h : 0.06	d : 0.06	i : 0.04	2 : 0.03	= : 0.03	] : 0.01	a : 0.01	
f : 0.28	] : 0.13	e : 0.13	g : 0.07	c : 0.06	h : 0.06	d : 0.06	2 : 0.06	i : 0.06	= : 0.03	a : 0.01	b : 0.01	
f : 0.34	e : 0.13	g : 0.09	] : 0.09	h : 0.07	i : 0.07	2 : 0.04	3 : 0.03	= : 0.03	d : 0.03	c : 0.01	F : 0.01	a : 0.01	
f : 0.37	g : 0.09	e : 0.09	h : 0.07	i : 0.07	c : 0.06	= : 0.04	d : 0.04	] : 0.03	3 : 0.03	b : 0.01	F : 0.01	4 : 0.01	: : 0.01	2 : 0.01	

#score	1527.690393853374
#seq	66
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_UTR_m2_run2.txt

#BEAR
[a[ccc[ffffffqqqqqqqqffffffc	chrX:48434210-48434471(+)$1	261	139	167	15.7526
ddddggggggg[aqqqqqqqqa]ggggg	chr2:232577051-232577260(+)$1	209	47	75	16.7384
hhhhhhhccccccqqqqqqqqccc]ccc	chr2:61408389-61408613(+)$1	224	134	162	16.2803
cc!!ffffff[bbqqqqqqqqbb]ffff	chr17:48474685-48474958(-)$1	273	198	226	15.6355
]ccc::gggggggqqqqqqqqggggggg	chr11:18034085-18034393(-)$1	308	243	271	14.9306
beeeeebb[ddddqqqqqqqqdddd]bb	chr11:67810937-67811152(+)$1	215	141	169	15.4285
dd[bb[gggggggqqqqqqqqggggggg	chr7:111846242-111846542(-)$1	300	39	67	16.7239
]cccdddd!!cccqqqqqqqqccc22dd	chr18:10789119-10789444(-)$1	325	238	266	17.1146
eee$$$$$eeeeeqqqqqqqqeeeeeee	chr5:891238-891478(-)$1	240	145	173	14.2245
cc::ggggggg[aqqqqqqqqagggggg	chr2:118845966-118846242(+)$1	276	201	229	15.3870
cc!!iiiiiiiiiqqqqqqqqiiiiiii	chr13:25086735-25086953(-)$1	218	128	156	17.3422
ccceeeee!!cccqqqqqqqqccceeee	chr5:130970546-130970902(-)$1	356	107	135	17.1561
b[ddddaffffffqqqqqqqqffffff]	chr1:39456853-39457114(+)$1	261	29	57	15.0711
:bb[a[gggggggqqqqqqqqggggggg	chr3:184081214-184081465(+)$1	251	218	246	16.1226
d[dddd"""ddddqqqqqqqqdddd]dd	chr6:160210326-160210604(-)$1	278	196	224	16.5040
ddd"""ccc[cccqqqqqqqqccc4444	chr9:116997826-116998032(+)$1	206	106	134	17.2766
gggg::gggggggqqqqqqqqggggggg	chr22:32007043-32007315(+)$1	272	209	237	15.1201
"bb[dddd!!cccqqqqqqqqccc22dd	chr20:57234574-57234790(+)$1	216	153	181	16.9063
d[bb!!bb[ddddqqqqqqqqdddd]bb	chr5:140044356-140044845(+)$1	489	179	207	15.8779
[ccc"""ffffffqqqqqqqqffffff2	chr4:113066622-113066983(+)$1	361	287	315	15.5094
ffffdddd[ddddqqqqqqqqdddd]dd	chr11:118881828-118882120(+)$1	292	153	181	15.9464
cc[eeeee[ddddqqqqqqqqdddd>>>	chr9:116999160-116999371(+)$1	211	30	58	15.8615
cccffffff[cccqqqqqqqqccc]fff	chr19:42399321-42399640(+)$1	319	164	192	17.1144
"bb!!hhhhhhhhqqqqqqqqhhhhhhh	chr3:184080708-184080986(+)$1	278	207	235	14.4655
"""a[a!!a[cccqqqqqqqqccca22a	chr19:5661535-5661809(+)$1	274	51	79	17.6048
ggggg[ccc[cccqqqqqqqqccc]ccc	chr9:116999171-116999404(+)$1	233	17	45	17.9555
[dddd"""eeeeeqqqqqqqqeeeee]d	chr17:4442953-4443257(-)$1	304	141	169	15.3643
ccc[ccc[eeeeeqqqqqqqqeeeee]c	chrX:128674250-128674554(+)$1	304	90	118	15.9765
eee!!dddd[cccqqqqqqqqccc]ddd	chr14:45603474-45603778(-)$1	304	250	278	16.5852
======[bb[cccqqqqqqqqccc]bb]	chr21:34143740-34144183(-)$1	443	378	406	16.9513
D:ggggggg[cccqqqqqqqqcccgggg	chr1:160231990-160232332(-)$1	342	79	107	16.4719
ffffffcccddddqqqqqqqqdddd]cc	chr3:48460556-48460810(-)$1	254	18	46	16.1980
fffbb[ddddcccqqqqqqqqccc]ddd	chr3:48732554-48732882(-)$1	328	29	57	16.0787
fffff####ddddqqqqqqqqdddd444	chr2:182757268-182757527(+)$1	259	224	252	16.2207
ggggg####a[bbqqqqqqqqbb]a22g	chr2:70056726-70057069(+)$1	343	130	158	16.3613
ddddffffffcccqqqqqqqqccc22ff	chr14:24654969-24655217(-)$1	248	102	130	16.3669
fffff[bb!!cccqqqqqqqqcccbb]f	chr17:40270284-40270521(-)$1	237	148	176	16.3598
b"""bb"""ddddqqqqqqqqdddd444	chr19:36110458-36110758(+)$1	300	201	229	16.1444
bb[ffffffbb[aqqqqqqqqa]bb]ff	chr22:31608279-31608530(+)$1	251	173	201	14.6747
cceeeee!!ddddqqqqqqqqdddd]ee	chr22:36635414-36635699(-)$1	285	11	39	16.6300
c!!dddd!!ddddqqqqqqqqdddd22d	chr7:44609301-44609553(-)$1	252	26	54	16.5692
cc[a[ccc[ddddqqqqqqqqdddd]cc	chr14:73569937-73570209(+)$1	272	169	197	17.3058
dd!!ggggggg[aqqqqqqqqa]ggggg	chr19:10221679-10221977(+)$1	298	130	158	17.1855
===========[aqqqqqqqqa]=====	chr9:130216678-130216971(+)$1	293	44	72	17.3586
a[hhhhhhhh[bbqqqqqqqqbb]hhhh	chr11:64545729-64546103(-)$1	374	92	120	14.5191
FFeeeee"""cccqqqqqqqqccceeee	chr21:38456442-38456692(+)$1	250	113	141	16.0606
:ggggggg!!cccqqqqqqqqccc22gg	chr14:24616205-24616537(-)$1	332	79	107	17.5073
c[ccc[ccc!!bbqqqqqqqqbb333cc	chr12:46123518-46123817(+)$1	299	213	241	16.9975
c[dddd$$$$$bbqqqqqqqqbbdddd]	chr16:24550966-24551205(+)$1	239	136	164	14.7147
gggggggffffffqqqqqqqqffffffd	chr17:40976060-40976358(-)$1	298	67	95	15.7496
c[ccc!!bbddddqqqqqqqqdddd]bb	chr21:45736247-45736509(+)$1	262	74	102	16.2447
::ggggggg[cccqqqqqqqqcccgggg	chr6:24423763-24424038(+)$1	275	241	269	16.4178
]ddddccc!!cccqqqqqqqqccc22cc	chr5:179045042-179045283(-)$1	241	192	220	17.3407
:bb[gggggggbbqqqqqqqqbb]gggg	chr3:50137909-50138156(+)$1	247	29	57	15.5673
dd[bb[dddd[bbqqqqqqqqbb]dddd	chr22:19418878-19419264(-)$1	386	335	363	14.9125
#ggggggg!!cccqqqqqqqqccc]ggg	chr17:21207691-21207968(+)$1	277	52	80	18.2985

#otherMatches

#Seq PSSM
ACCUCGUGAGUCUUCUGACAUGGACUCU	chrX:48434210-48434471(+)$1	261	139	167	15.7526
CAGGAGCCACAGUAGGAGGGAAGUGUGG	chr2:232577051-232577260(+)$1	209	47	75	16.7384
AAGUAGAUGACACUGAGGUAUGUGAUCA	chr2:61408389-61408613(+)$1	224	134	162	16.2803
GGCCGCUGAACUGACAAGCGACAUUUCA	chr17:48474685-48474958(-)$1	273	198	226	15.6355
UCGCCCGGUCCCAGAGCUCCGUGGGGCC	chr11:18034085-18034393(-)$1	308	243	271	14.9306
GGGUGAGCAGAUCGGACAGAAGAUCCGC	chr11:67810937-67811152(+)$1	215	141	169	15.4285
CGGGCGGGGGUGCGCCGGAGAGUGCCCC	chr7:111846242-111846542(-)$1	300	39	67	16.7239
GGCCAUGUUCAUCAAGUACUGGAUCUAC	chr18:10789119-10789444(-)$1	325	238	266	17.1146
GGGAAGAAGGUGGAGGUGGAGCCGCCCC	chr5:891238-891478(-)$1	240	145	173	14.2245
GCGGCCUGAGGAGGAGGGUGGCCCUUGG	chr2:118845966-118846242(+)$1	276	201	229	15.3870
GUGGGGGGCUGCAAAGGUCCCUGUAGUC	chr13:25086735-25086953(-)$1	218	128	156	17.3422
CCCGCUACCUAGUGUGAAUGAACUGUGG	chr5:130970546-130970902(-)$1	356	107	135	17.1561
CCUCUGCCGGGCGAUGGUGUGCGCCCGU	chr1:39456853-39457114(+)$1	261	29	57	15.0711
UCUUGUGGCCUGCCCCUACCAGCAGGUC	chr3:184081214-184081465(+)$1	251	218	246	16.1226
UUGCGGCCGGGGAGGGCCGAGUCCCACC	chr6:160210326-160210604(-)$1	278	196	224	16.5040
GUAAUUGCAUGAGAUUUUCCCCUCCCCC	chr9:116997826-116998032(+)$1	206	106	134	17.2766
GUGGAAGACGCACCAUCUGCAGUGUGUC	chr22:32007043-32007315(+)$1	272	209	237	15.1201
UGAGUUUAUAAAAUACCUACUUUUCCUG	chr20:57234574-57234790(+)$1	216	153	181	16.9063
GAGCGACGAGGAGGACCCAGACUCCAUG	chr5:140044356-140044845(+)$1	489	179	207	15.8779
cggcgaagcggccgggucgggggcCGCG	chr4:113066622-113066983(+)$1	361	287	315	15.5094
UCUGUCUUAGAGGUUGGUUUCCCUCGGA	chr11:118881828-118882120(+)$1	292	153	181	15.9464
GGACUGGGCGGCUGUUCACCUGGCCAUU	chr9:116999160-116999371(+)$1	211	30	58	15.8615
CGGGGCUCCUGGGCAGGACACCCCUGGA	chr19:42399321-42399640(+)$1	319	164	192	17.1144
UCCAGUCUUCGGAACCCGGCCUCUGAAG	chr3:184080708-184080986(+)$1	278	207	235	14.4655
GAGCGUGAGCGGCUGGAGAUUGCCCGAG	chr19:5661535-5661809(+)$1	274	51	79	17.6048
GAGGACUGGGCGGCUGUUCACCUGGCCA	chr9:116999171-116999404(+)$1	233	17	45	17.9555
AUGGCACACCUGCAGCCACCGGCGGGAG	chr17:4442953-4443257(-)$1	304	141	169	15.3643
GGUGUGGGGACGCGGGAGCCAGUGUCGU	chrX:128674250-128674554(+)$1	304	90	118	15.9765
GGGCUGGUGCGGCUGAGGGACGCCUCAC	chr14:45603474-45603778(-)$1	304	250	278	16.5852
CCGGGGCCGUCGCCGCCUUCCGCGCUGA	chr21:34143740-34144183(-)$1	443	378	406	16.9513
cggccgcuggccaguguaagauggcggc	chr1:160231990-160232332(-)$1	342	79	107	16.4719
GCCCUUGGUGCCUGCAGGAAGAGGCGAC	chr3:48460556-48460810(-)$1	254	18	46	16.1980
AGAGCAUCCUGGCCAGAACAAGCCAAGG	chr3:48732554-48732882(-)$1	328	29	57	16.0787
AGCUACAAACCGGAAAGUGAGCCGGCGG	chr2:182757268-182757527(+)$1	259	224	252	16.2207
GGGCGGGGAAGAGGAUGGAGACUGUGGC	chr2:70056726-70057069(+)$1	343	130	158	16.3613
UGGUGCUGGCCGUGCUGUCUGACGGAGC	chr14:24654969-24655217(-)$1	248	102	130	16.3669
CUGGGAGUCAGGCUUCACCAUGCCACCC	chr17:40270284-40270521(-)$1	237	148	176	16.3598
AGUGAGACUGGGGCUGCCCCACCCCUGC	chr19:36110458-36110758(+)$1	300	201	229	16.1444
AGUCCGGUUCCAUGGCGCCUGAGGGAAA	chr22:31608279-31608530(+)$1	251	173	201	14.6747
UGCUGGGGAGCAGCGUGUUUACUGUGCU	chr22:36635414-36635699(-)$1	285	11	39	16.6300
CAAGCUGCACUGUCUUCCCUUGCAGGAC	chr7:44609301-44609553(-)$1	252	26	54	16.5692
cgagaucgggaucgagagagagaUCGUG	chr14:73569937-73570209(+)$1	272	169	197	17.3058
GCCGGGGCCGCCCAGGGAAGAGAGUGGC	chr19:10221679-10221977(+)$1	298	130	158	17.1855
GUUGGGGGCUGUGACAAAUUCCCCAGUC	chr9:130216678-130216971(+)$1	293	44	72	17.3586
CGUCUcgcgccgccgccgcccgccgcgU	chr11:64545729-64546103(-)$1	374	92	120	14.5191
aggaggaaaaccaggagaagauggucuu	chr21:38456442-38456692(+)$1	250	113	141	16.0606
AUUCAGCUCAAAACCUUUCUUUUUCUAG	chr14:24616205-24616537(-)$1	332	79	107	17.5073
GCAGCGCCGGGGCGAGCCGGGGCGAACG	chr12:46123518-46123817(+)$1	299	213	241	16.9975
GGCGAGAAGAAGCGUCAGGGAGCCUCGG	chr16:24550966-24551205(+)$1	239	136	164	14.7147
CCGGGAAGUCGCUGAAGACAGAGCGAUG	chr17:40976060-40976358(-)$1	298	67	95	15.7496
UUCAGAGGCUGGGCUUCGACACCCGUGU	chr21:45736247-45736509(+)$1	262	74	102	16.2447
AGUCAGACACUUGAAAAAAACUAAUGUU	chr6:24423763-24424038(+)$1	275	241	269	16.4178
UUAUUUGAUUGAUUGUACUUUGUCUUUC	chr5:179045042-179045283(-)$1	241	192	220	17.3407
CGUCUAUAUCUGAAUGCUGUCUCUAGGU	chr3:50137909-50138156(+)$1	247	29	57	15.5673
CCGGAGUCGGGUCGGGGUCUGGAGUCGA	chr22:19418878-19419264(-)$1	386	335	363	14.9125
AGCCCUCCAAUGUCCUUAUCAACAAGGA	chr17:21207691-21207968(+)$1	277	52	80	18.2985

#DB
.(.(((.((((((........)))))))	chrX:48434210-48434471(+)$1	1	139	167	15.7526
(((((((((((.(........).)))))	chr2:232577051-232577260(+)$1	1	47	75	16.7384
(((((((((((((........))).)))	chr2:61408389-61408613(+)$1	1	134	162	16.2803
((..((((((.((........)).))))	chr17:48474685-48474958(-)$1	1	198	226	15.6355
.)))..(((((((........)))))))	chr11:18034085-18034393(-)$1	1	243	271	14.9306
))))))((.((((........)))).))	chr11:67810937-67811152(+)$1	1	141	169	15.4285
((.((.(((((((........)))))))	chr7:111846242-111846542(-)$1	1	39	67	16.7239
.)))((((..(((........)))..))	chr18:10789119-10789444(-)$1	1	238	266	17.1146
(((.....(((((........)))))))	chr5:891238-891478(-)$1	1	145	173	14.2245
))..(((((((.(........)))))))	chr2:118845966-118846242(+)$1	1	201	229	15.3870
((..(((((((((........)))))))	chr13:25086735-25086953(-)$1	1	128	156	17.3422
)))(((((..(((........)))))))	chr5:130970546-130970902(-)$1	1	107	135	17.1561
(.(((((((((((........)))))).	chr1:39456853-39457114(+)$1	1	29	57	15.0711
.((.(.(((((((........)))))))	chr3:184081214-184081465(+)$1	1	218	246	16.1226
(.((((...((((........)))).))	chr6:160210326-160210604(-)$1	1	196	224	16.5040
(((...(((.(((........)))....	chr9:116997826-116998032(+)$1	1	106	134	17.2766
))))..(((((((........)))))))	chr22:32007043-32007315(+)$1	1	209	237	15.1201
.((.((((..(((........)))..))	chr20:57234574-57234790(+)$1	1	153	181	16.9063
(.((..((.((((........)))).))	chr5:140044356-140044845(+)$1	1	179	207	15.8779
.(((...((((((........)))))).	chr4:113066622-113066983(+)$1	1	287	315	15.5094
((((((((.((((........)))).))	chr11:118881828-118882120(+)$1	1	153	181	15.9464
((.(((((.((((........))))...	chr9:116999160-116999371(+)$1	1	30	58	15.8615
)))((((((.(((........))).)))	chr19:42399321-42399640(+)$1	1	164	192	17.1144
.((..((((((((........)))))))	chr3:184080708-184080986(+)$1	1	207	235	14.4655
...(.(..(.(((........))))..)	chr19:5661535-5661809(+)$1	1	51	79	17.6048
(((((.(((.(((........))).)))	chr9:116999171-116999404(+)$1	1	17	45	17.9555
.((((...(((((........))))).)	chr17:4442953-4443257(-)$1	1	141	169	15.3643
(((.(((.(((((........))))).)	chrX:128674250-128674554(+)$1	1	90	118	15.9765
(((..((((.(((........))).)))	chr14:45603474-45603778(-)$1	1	250	278	16.5852
((((((.((.(((........))).)).	chr21:34143740-34144183(-)$1	1	378	406	16.9513
(.(((((((.(((........)))))))	chr1:160231990-160232332(-)$1	1	79	107	16.4719
(((((((((((((........)))).))	chr3:48460556-48460810(-)$1	1	18	46	16.1980
)))((.(((((((........))).)))	chr3:48732554-48732882(-)$1	1	29	57	16.0787
(((((....((((........))))...	chr2:182757268-182757527(+)$1	1	224	252	16.2207
(((((....(.((........)).)..)	chr2:70056726-70057069(+)$1	1	130	158	16.3613
(((((((((((((........)))..))	chr14:24654969-24655217(-)$1	1	102	130	16.3669
(((((.((..(((........))))).)	chr17:40270284-40270521(-)$1	1	148	176	16.3598
(...((...((((........))))...	chr19:36110458-36110758(+)$1	1	201	229	16.1444
((.((((((((.(........).)).))	chr22:31608279-31608530(+)$1	1	173	201	14.6747
(((((((..((((........)))).))	chr22:36635414-36635699(-)$1	1	11	39	16.6300
(..((((..((((........))))..)	chr7:44609301-44609553(-)$1	1	26	54	16.5692
((.(.(((.((((........)))).))	chr14:73569937-73570209(+)$1	1	169	197	17.3058
((..(((((((.(........).)))))	chr19:10221679-10221977(+)$1	1	130	158	17.1855
(((((((((((.(........).)))))	chr9:130216678-130216971(+)$1	1	44	72	17.3586
(.((((((((.((........)).))))	chr11:64545729-64546103(-)$1	1	92	120	14.5191
(((((((...(((........)))))))	chr21:38456442-38456692(+)$1	1	113	141	16.0606
.(((((((..(((........)))..))	chr14:24616205-24616537(-)$1	1	79	107	17.5073
(.(((.(((..((........))...))	chr12:46123518-46123817(+)$1	1	213	241	16.9975
(.((((.....((........)))))).	chr16:24550966-24551205(+)$1	1	136	164	14.7147
)))))))((((((........))))))(	chr17:40976060-40976358(-)$1	1	67	95	15.7496
(.(((..((((((........)))).))	chr21:45736247-45736509(+)$1	1	74	102	16.2447
..(((((((.(((........)))))))	chr6:24423763-24424038(+)$1	1	241	269	16.4178
.))))(((..(((........)))..))	chr5:179045042-179045283(-)$1	1	192	220	17.3407
.((.(((((((((........)).))))	chr3:50137909-50138156(+)$1	1	29	57	15.5673
((.((.((((.((........)).))))	chr22:19418878-19419264(-)$1	1	335	363	14.9125
.(((((((..(((........))).)))	chr17:21207691-21207968(+)$1	1	52	80	18.2985

#PSSM
c : 0.23	d : 0.14	f : 0.08	b : 0.07	: : 0.07	g : 0.07	[ : 0.05	] : 0.05	" : 0.05	e : 0.03	= : 0.03	h : 0.01	D : 0.01	a : 0.01	F : 0.01	# : 0.01	
c : 0.21	d : 0.14	[ : 0.12	g : 0.10	b : 0.08	f : 0.08	e : 0.05	" : 0.03	= : 0.03	: : 0.03	a : 0.01	h : 0.01	! : 0.01	F : 0.01	
d : 0.14	c : 0.14	g : 0.14	[ : 0.10	e : 0.08	b : 0.08	f : 0.08	! : 0.07	h : 0.03	" : 0.03	= : 0.03	: : 0.01	
d : 0.14	g : 0.14	c : 0.10	f : 0.10	! : 0.08	e : 0.08	b : 0.07	[ : 0.07	h : 0.03	" : 0.03	a : 0.03	= : 0.03	$ : 0.01	: : 0.01	
g : 0.19	d : 0.16	f : 0.12	e : 0.08	c : 0.07	b : 0.07	! : 0.05	h : 0.03	: : 0.03	" : 0.03	[ : 0.03	= : 0.03	$ : 0.01	i : 0.01	a : 0.01	
g : 0.16	d : 0.14	[ : 0.12	f : 0.08	e : 0.08	c : 0.07	h : 0.05	" : 0.05	: : 0.03	! : 0.03	= : 0.03	# : 0.03	$ : 0.01	i : 0.01	a : 0.01	b : 0.01	
g : 0.23	d : 0.12	c : 0.12	f : 0.07	e : 0.07	" : 0.07	h : 0.05	b : 0.05	[ : 0.03	$ : 0.03	! : 0.03	# : 0.03	i : 0.01	a : 0.01	= : 0.01	
g : 0.21	f : 0.14	c : 0.12	d : 0.10	b : 0.08	" : 0.07	! : 0.05	$ : 0.03	e : 0.03	h : 0.03	# : 0.03	i : 0.01	[ : 0.01	= : 0.01	
g : 0.17	! : 0.16	f : 0.14	c : 0.08	[ : 0.08	e : 0.05	" : 0.05	d : 0.05	h : 0.03	b : 0.03	# : 0.03	i : 0.01	a : 0.01	= : 0.01	$ : 0.01	
d : 0.24	g : 0.14	! : 0.14	[ : 0.14	f : 0.10	e : 0.05	h : 0.03	c : 0.01	i : 0.01	a : 0.01	b : 0.01	= : 0.01	" : 0.01	$ : 0.01	
c : 0.33	d : 0.21	g : 0.14	f : 0.07	[ : 0.07	e : 0.05	i : 0.01	h : 0.01	b : 0.01	= : 0.01	! : 0.01	$ : 0.01	
c : 0.33	d : 0.21	b : 0.12	[ : 0.08	f : 0.07	g : 0.07	e : 0.05	i : 0.01	h : 0.01	
c : 0.33	d : 0.21	b : 0.12	a : 0.08	f : 0.07	g : 0.07	e : 0.05	i : 0.01	h : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.33	d : 0.21	b : 0.12	a : 0.08	f : 0.07	g : 0.07	e : 0.05	i : 0.01	h : 0.01	
c : 0.33	d : 0.21	b : 0.12	g : 0.08	f : 0.07	] : 0.07	e : 0.05	i : 0.01	h : 0.01	
c : 0.33	d : 0.23	g : 0.12	] : 0.08	f : 0.07	e : 0.05	i : 0.01	h : 0.01	b : 0.01	= : 0.01	3 : 0.01	
d : 0.24	g : 0.17	] : 0.12	f : 0.08	2 : 0.08	e : 0.08	h : 0.03	a : 0.03	b : 0.03	i : 0.01	4 : 0.01	= : 0.01	3 : 0.01	
g : 0.19	] : 0.16	2 : 0.14	f : 0.10	e : 0.08	d : 0.07	4 : 0.05	c : 0.03	h : 0.03	b : 0.03	i : 0.01	> : 0.01	= : 0.01	3 : 0.01	
g : 0.21	f : 0.14	d : 0.14	c : 0.10	b : 0.07	e : 0.07	4 : 0.05	2 : 0.05	] : 0.05	h : 0.03	i : 0.01	> : 0.01	= : 0.01	
g : 0.23	d : 0.17	c : 0.14	f : 0.08	e : 0.07	b : 0.05	] : 0.05	4 : 0.05	h : 0.03	i : 0.01	2 : 0.01	> : 0.01	a : 0.01	= : 0.01	

#score	909.1858804443776
#seq	56
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_UTR_m2_run2.txt

#BEAR
ggggg!!a[cccnnnnnccc]a]ggggggg	chr7:44162910-44163179(-)$1	269	35	65	9.5092
c[ccc[bb[ddddllldddd]bb]ccc]cc	chr6:74230525-74230774(-)$1	249	139	169	10.6001
d[eeeee!!ddddlllddddeeeee22ddd	chr10:102729292-102729613(+)$1	321	110	140	10.0365
ccc!!dddd[cccmmmmccc22dddd]ccc	chr20:61299454-61299715(+)$1	261	64	94	10.8296
eee[ccc!!ddddllldddd22ccc]eeee	chr14:50246338-50246629(+)$1	291	179	209	11.0490
d!!ffffff[cccmmmmccc]ffffff22d	chrX:153585537-153585803(-)$1	266	13	43	10.4881
Fggggggg[cccammmma]ccc22gggggg	chr14:105916453-105916731(+)$1	278	221	251	11.2453
ggggggg!!ddddmmmmdddd22ggggggg	chr19:45873512-45873783(-)$1	271	163	193	13.8169
$$ffffff[ddddmmmmdddd]ffffff33	chr20:17948735-17948963(-)$1	228	116	146	12.1864
eeee[agggggggmmmmggggggg22a]ee	chr17:80441638-80441898(+)$1	260	177	207	10.2776
:ggggggg[ddddmmmmdddd]ggggggg:	chr17:7477095-7477334(+)$1	239	57	87	11.3330
bb[dddd!!ddddmmmmdddd]dddd333b	chr16:4524208-4524488(-)$1	280	52	82	12.2980
ccc[ccc!!ddddmmmmdddd4444ccccc	chr9:117002384-117002620(+)$1	236	97	127	14.2060
####ggggggg[ammmma]ggggggg333e	chr22:21328842-21329122(+)$1	280	100	130	11.5793
e!!dddd"""cccmmmmccc4444dddd33	chr22:21983336-21983660(-)$1	324	126	156	12.4712
a[eeeee"""cccmmmmccc4444eeeeea	chr16:29810784-29811052(+)$1	268	215	245	12.0230
!dddd"""eeeeemmmmeeeeedddd22a]	chr19:39125679-39125975(+)$1	296	174	204	11.2773
dd[bb"""ccccccmmmmccc]ccc333bb	chr14:24657230-24657475(-)$1	245	209	239	10.0652
ccc!!ccc[ddddlllddddccc]ccc333	chr12:49658857-49659183(+)$1	326	180	210	11.8271
gggggg[a[cccammmma]ccc]agggggg	chr19:55739808-55740064(-)$1	256	2	32	12.0535
"ddddccc!!ddddllldddd22ccc]ddd	chr16:57220395-57220644(+)$1	249	133	163	10.5227
###ccc[ffffffmmmmffffff]ccc]gg	chr19:1370968-1371287(+)$1	319	19	49	9.8834
ffffff"""ddddmmmmdddd333ffffff	chr5:32173675-32173952(-)$1	277	235	265	13.6518
ccc[a####ddddmmmmdddd4444a]ccc	chr14:24682457-24682721(-)$1	264	32	62	14.5977
ffff[ddddddddmmmmdddd333ddddff	chr14:23299072-23299351(+)$1	279	200	230	11.9529
eee####a[ddddllldddd]a333eeeee	chr16:67985803-67986071(-)$1	268	142	172	11.7937
####bb"""ddddmmmmdddd333bb4444	chr13:113864108-113864406(+)$1	298	176	206	14.6179
##eeeee[eeeeemmmmeeeeeeeeeeddd	chr17:79917470-79917703(-)$1	233	152	182	10.1053
fffff[a"""cccmmmmccc333a]fffff	chr17:73775465-73775731(-)$1	266	118	148	12.7448
d####ccceeeeemmmmeeeee]ccc22dd	chr17:7214501-7214765(+)$1	264	174	204	11.5762
ggg"""a!!ddddmmmmdddd22a22gggg	chr5:179248471-179248719(+)$1	248	144	174	14.1637
!eeeee####cccmmmmccceeeeedddd:	chr10:28822884-28823160(+)$1	276	68	98	10.2092
d[ccc[a!!ddddnnnnndddd22a]cccd	chr1:182360600-182360844(-)$1	244	4	34	10.2725
dddda!!bbddddmmmmdddd]bb4444a]	chrX:151138494-151138738(-)$1	244	165	195	12.1313
dddd$$$$$ddddmmmmdddddddd]dddd	chr1:76251849-76252104(+)$1	255	25	55	11.1680
!!ccc"""eeeeemmmmeeeee4444ccc4	chr17:8339353-8339625(+)$1	272	148	178	13.2161
ggggccc[eeeeemmmmeeeee22ccc]gg	chr7:23571268-23571560(-)$1	292	90	120	12.0790
gggccc####cccmmmmccc333ccc8888	chr16:67976989-67977262(-)$1	273	202	232	12.2745
cc[bb"""eeeeemmmmeeeee4444bb22	chr12:1038972-1039216(-)$1	244	106	136	11.6113
!!ffffff!!cccmmmmccc22ffffff22	chr21:46914353-46914591(+)$1	238	199	229	11.3031
[ccc[bb[addddmmmmdddd22a]bb]cc	chr12:58005555-58005826(+)$1	271	22	52	12.9970
dddd[ddddddddmmmmdddd]dddd22dd	chr18:48556658-48556900(+)$1	242	2	32	10.9993
b[ffffff!!cccmmmmccc333ffffff2	chr19:5941711-5941960(-)$1	249	145	175	11.7066
gggg[dddd[cccmmmmcccdddd]ggggg	chr16:46919221-46919498(+)$1	277	240	270	10.7118
dddda!!bbddddmmmmdddd]bb4444a]	chrX:151138445-151138694(-)$1	249	121	151	12.1313
[ccc####eeeeemmmmeeeeecccbb]dd	chr3:10362368-10362634(-)$1	266	25	55	11.7685
$$$$bb"""ddddmmmmdddd333bb4444	chr17:17718137-17718374(-)$1	237	75	105	13.8608
c[a[bb[a[ddddllldddd]a]bb]a]cc	chr16:4400928-4401191(-)$1	263	20	50	11.2074
"bb$$$$$eeeeemmmmeeeee333bb]ff	chr12:120636230-120636475(-)$1	245	79	109	11.0967
gg"""bb!!a!!ammmma22a22bb22ggg	chr19:14529804-14530070(-)$1	266	32	62	10.7304
[ccc[ccceeeeemmmmeeeee]cccccc]	chr9:116999853-117000108(+)$1	255	36	66	11.8547
cc####ggggggglllggggggg4444ccc	chr14:23445524-23445771(-)$1	247	126	156	9.7117
ffff!!ccc[cccmmmmccc22ccc22fff	chr17:46022789-46023080(+)$1	291	236	266	11.2590
hggggggg"""bbmmmmbbggggggg4444	chr12:131356599-131356889(+)$1	290	238	268	10.3688
""ffffff[ddddllldddd]ffffff444	chr8:55013986-55014289(-)$1	303	80	110	10.4995
========[ddddmmmmdddd=========	chr17:19459154-19459430(+)$1	276	164	194	13.9323
ee[==========mmmm==========22e	chr17:76122891-76123181(-)$1	290	175	205	11.7657
e[===========lll===========eee	chr17:27074103-27074372(+)$1	269	8	38	10.3517
eeccc[a[eeeeemmmmeeeee]a]ccc]e	chr3:197677018-197677302(+)$1	284	141	171	11.8622

#otherMatches

#Seq PSSM
CGCGCGGGGAUUGGCGGGAUGCGGCGCGCC	chr7:44162910-44163179(-)$1	269	35	65	9.5092
GCAGUACGUGAUUCUUGAUCCCGAGCUUCG	chr6:74230525-74230774(-)$1	249	139	169	10.6001
CCGGGGGUCGGGCAAGGCCUCCCCCACGUC	chr10:102729292-102729613(+)$1	321	110	140	10.0365
ACUAACGGCAACUCUACGGUAAGCUGGGGU	chr20:61299454-61299715(+)$1	261	64	94	10.8296
AUGAAUUGUAGGUAUCACUUUAGAUACAUU	chr14:50246338-50246629(+)$1	291	179	209	11.0490
CGCUGUUGGCCGCUGCGGCGCUCGGCACGG	chrX:153585537-153585803(-)$1	266	13	43	10.4881
CGGCCUGGUCUGCCGCAGCCAGUCCCGGGC	chr14:105916453-105916731(+)$1	278	221	251	11.2453
GCUCCUGAGGACCUGAGGGUUACCGGGGGC	chr19:45873512-45873783(-)$1	271	163	193	13.8169
CCCCGGGGAAUCCCUGUGGAUGUCCCGGAU	chr20:17948735-17948963(-)$1	228	116	146	12.1864
AGCUGUUGAAUGGGAUACCAUUCACCAGGG	chr17:80441638-80441898(+)$1	260	177	207	10.2776
GUGGGGGGAAGGGGAUGUCCUACCCUCCGA	chr17:7477095-7477334(+)$1	239	57	87	11.3330
CCGCGGCGAGGAGGUCACUCCAGCCGGUGG	chr16:4524208-4524488(-)$1	280	52	82	12.2980
CUCUCUGCUUCCCCUCAGGGAUUCCCAGGA	chr9:117002384-117002620(+)$1	236	97	127	14.2060
AGAUGGGAUUGGUGAGAAGUGGUUCCUGGC	chr22:21328842-21329122(+)$1	280	100	130	11.5793
GAAGUUCGAUGCCCCCAGGUGAAAGGACGU	chr22:21983336-21983660(-)$1	324	126	156	12.4712
GAGAGACGCUUCUACCUAGACACAGUCUCC	chr16:29810784-29811052(+)$1	268	215	245	12.0230
CGUGUUCUGGGCUGGGAAGUCUGCACCUGC	chr19:39125679-39125975(+)$1	296	174	204	11.2773
UGAGGAAGGGUGAUGAUGAUCUGCCAAACC	chr14:24657230-24657475(-)$1	245	209	239	10.0652
CUGCACCUCGGGCCGCGCCCAGGACAGCUC	chr12:49658857-49659183(+)$1	326	180	210	11.8271
CCAGGUGAGAGCCUUCUGAGCUGUGCCUGG	chr19:55739808-55740064(-)$1	256	2	32	12.0535
GUGGCGUUGGUCAGAACCUGAGAAACAGCC	chr16:57220395-57220644(+)$1	249	133	163	10.5227
CAGGGCGUCUACCAGGAGGUGGGGGCCAAG	chr19:1370968-1371287(+)$1	319	19	49	9.8834
GGAUCCUCCCCGUAGAGAUGGCUUGGAUUU	chr5:32173675-32173952(-)$1	277	235	265	13.6518
UCUGGAGGACGCUGAGGGGCGGAGGCGGGA	chr14:24682457-24682721(-)$1	264	32	62	14.5977
CUGCACUGCAGCGUAGCCGCUUGGGCGGGC	chr14:23299072-23299351(+)$1	279	200	230	11.9529
UGGGCAACAGGACCCUGUCCCGGGACCAGU	chr16:67985803-67986071(-)$1	268	142	172	11.7937
AGACAGACCUCGGCUGCCCGACAACUACAC	chr13:113864108-113864406(+)$1	298	176	206	14.6179
CCAGGGGCAGCCGGCGGUGGCUCCUCUUCC	chr17:79917470-79917703(-)$1	233	152	182	10.1053
CGGGAGGUUUCCCCUUGGGGCUUUGUUCCG	chr17:73775465-73775731(-)$1	266	118	148	12.7448
GCAUCCAGGAUGGGUACCUAUCACUGCUCC	chr17:7214501-7214765(+)$1	264	174	204	11.5762
GGUAAACAAGCGCGGGGGUGCGGGGGACUC	chr5:179248471-179248719(+)$1	248	144	174	14.1637
AGCCUUACCAGGUACCAGCCGAGGCCGGGG	chr10:28822884-28823160(+)$1	276	68	98	10.2092
UUACCCGCCCGCCUGCUCGGCGACCAGGUA	chr1:182360600-182360844(-)$1	244	4	34	10.2725
CAGAGGGUGCCAUGCUCAUGGACAGGAACA	chrX:151138494-151138738(-)$1	244	165	195	12.1313
GCCUGAGAGGCGCAUCUGCGCAGGCGCCCG	chr1:76251849-76252104(+)$1	255	25	55	11.1680
CCAGCCUGGGGGCAACUGUUCCAACCGCUC	chr17:8339353-8339625(+)$1	272	148	178	13.2161
UUUAGUUCUGGGGAGCGCCUCGUCGACAUG	chr7:23571268-23571560(-)$1	292	90	120	12.0790
GAACUGGAUGUGCUACCGCAAGACAGAGGA	chr16:67976989-67977262(-)$1	273	202	232	12.2745
AAUGGUUGUGGCCCAGCGGUCAGUGUCCUC	chr12:1038972-1039216(-)$1	244	106	136	11.6113
GCGGCUGCUGAGCUUGUGCUGUGCGGCCCA	chr21:46914353-46914591(+)$1	238	199	229	11.3031
AGGGAGGGGGGGUGUgcgcccggcgccguc	chr12:58005555-58005826(+)$1	271	22	52	12.9970
UGGGUGGCGGAGCCUGCGUUCGCGCCUUCC	chr18:48556658-48556900(+)$1	242	2	32	10.9993
GAGAAGGUAAGGAGCUCUCUAACACCUUUG	chr19:5941711-5941960(-)$1	249	145	175	11.7066
CUUCUGUGGUCUGGGGACAGUCACCGAGGU	chr16:46919221-46919498(+)$1	277	240	270	10.7118
CAGAGGGUGCCAUGCUCAUGGACAGGAACA	chrX:151138445-151138694(-)$1	249	121	151	12.1313
AGAUUUGGGGGGCUCUGGCCCCGUCCUUGC	chr3:10362368-10362634(-)$1	266	25	55	11.7685
CCCUGCCAUCUGUUCCGACAGCCAGCUCUC	chr17:17718137-17718374(-)$1	237	75	105	13.8608
cgggcggcgagcuccgggcugggcggcggg	chr16:4400928-4401191(-)$1	263	20	50	11.2074
UGAUAUCACAGAGGAAACUCUGCAUUCUCG	chr12:120636230-120636475(-)$1	245	79	109	11.0967
CUGAACUGAGAGCGAGAGGACGAGGGGAGA	chr19:14529804-14530070(-)$1	266	32	62	10.7304
UGGAAGGUGGGGUCCUCACCCCUGCCUCCC	chr9:116999853-117000108(+)$1	255	36	66	11.8547
CUGAGAAGUCUCACUGUGAGGCUGAGGAGC	chr14:23445524-23445771(-)$1	247	126	156	9.7117
GCCUGAGUUUAUGGCUACGUCUAGCGAAGG	chr17:46022789-46023080(+)$1	291	236	266	11.2590
gcguggggucggCGCUAGCCCCCGCGAAcc	chr12:131356599-131356889(+)$1	290	238	268	10.3688
GACGCUCCUCCCGGCCCGGGUGGGGUGCGA	chr8:55013986-55014289(-)$1	303	80	110	10.4995
AUGGUGGAGCUGGGCGCUCAGUCCAUCGUG	chr17:19459154-19459430(+)$1	276	164	194	13.9323
UGUGCCCCUGUCUCAUCAGAUGGGGGCUCC	chr17:76122891-76123181(-)$1	290	175	205	11.7657
AUCUAGGCUGGUUGGGAACCGGUCUGGUGA	chr17:27074103-27074372(+)$1	269	8	38	10.3517
GCGAGUCGCCGGUGCGUAUCGGAGUCUCUG	chr3:197677018-197677302(+)$1	284	141	171	11.8622

#DB
(((((..(.(((.....))).).)))))))	chr7:44162910-44163179(-)$1	1	35	65	9.5092
(.(((.((.((((...)))).)).))).))	chr6:74230525-74230774(-)$1	1	139	169	10.6001
(.(((((..((((...)))))))))..)))	chr10:102729292-102729613(+)$1	1	110	140	10.0365
(((..((((.(((....)))..)))).)))	chr20:61299454-61299715(+)$1	1	64	94	10.8296
(((.(((..((((...))))..))).))))	chr14:50246338-50246629(+)$1	1	179	209	11.0490
(..((((((.(((....))).))))))..)	chrX:153585537-153585803(-)$1	1	13	43	10.4881
)(((((((.((((....).)))..))))))	chr14:105916453-105916731(+)$1	1	221	251	11.2453
(((((((..((((....))))..)))))))	chr19:45873512-45873783(-)$1	1	163	193	13.8169
..((((((.((((....)))).))))))..	chr20:17948735-17948963(-)$1	1	116	146	12.1864
((((.((((((((....)))))))..).))	chr17:80441638-80441898(+)$1	1	177	207	10.2776
.(((((((.((((....)))).))))))).	chr17:7477095-7477334(+)$1	1	57	87	11.3330
((.((((..((((....)))).))))...)	chr16:4524208-4524488(-)$1	1	52	82	12.2980
(((.(((..((((....))))....)))))	chr9:117002384-117002620(+)$1	1	97	127	14.2060
....(((((((.(....).)))))))...)	chr22:21328842-21329122(+)$1	1	100	130	11.5793
(..((((...(((....)))....))))..	chr22:21983336-21983660(-)$1	1	126	156	12.4712
(.(((((...(((....)))....))))))	chr16:29810784-29811052(+)$1	1	215	245	12.0230
.((((...(((((....)))))))))..).	chr19:39125679-39125975(+)$1	1	174	204	11.2773
((.((...((((((....))).)))...))	chr14:24657230-24657475(-)$1	1	209	239	10.0652
(((..(((.((((...))))))).)))...	chr12:49658857-49659183(+)$1	1	180	210	11.8271
((((((.(.((((....).))).)))))))	chr19:55739808-55740064(-)$1	1	2	32	12.0535
.(((((((..((((...))))..))).)))	chr16:57220395-57220644(+)$1	1	133	163	10.5227
...(((.((((((....)))))).))).))	chr19:1370968-1371287(+)$1	1	19	49	9.8834
((((((...((((....))))...))))))	chr5:32173675-32173952(-)$1	1	235	265	13.6518
(((.(....((((....))))....).)))	chr14:24682457-24682721(-)$1	1	32	62	14.5977
((((.((((((((....))))...))))))	chr14:23299072-23299351(+)$1	1	200	230	11.9529
(((....(.((((...)))).)...)))))	chr16:67985803-67986071(-)$1	1	142	172	11.7937
....((...((((....))))...))....	chr13:113864108-113864406(+)$1	1	176	206	14.6179
..(((((.(((((....)))))))))))))	chr17:79917470-79917703(-)$1	1	152	182	10.1053
(((((.(...(((....)))...).)))))	chr17:73775465-73775731(-)$1	1	118	148	12.7448
(....((((((((....))))).)))..))	chr17:7214501-7214765(+)$1	1	174	204	11.5762
(((...(..((((....))))..)..))))	chr5:179248471-179248719(+)$1	1	144	174	14.1637
.(((((....(((....)))))))))))).	chr10:28822884-28823160(+)$1	1	68	98	10.2092
(.(((.(..((((.....))))..).))))	chr1:182360600-182360844(-)$1	1	4	34	10.2725
(((((..((((((....)))).))....).	chrX:151138494-151138738(-)$1	1	165	195	12.1313
((((.....((((....)))))))).))))	chr1:76251849-76252104(+)$1	1	25	55	11.1680
..(((...(((((....)))))....))).	chr17:8339353-8339625(+)$1	1	148	178	13.2161
(((((((.(((((....)))))..))).))	chr7:23571268-23571560(-)$1	1	90	120	12.0790
((((((....(((....)))...)))....	chr16:67976989-67977262(-)$1	1	202	232	12.2745
((.((...(((((....)))))....))..	chr12:1038972-1039216(-)$1	1	106	136	11.6113
..((((((..(((....)))..))))))..	chr21:46914353-46914591(+)$1	1	199	229	11.3031
.(((.((.(((((....))))..).)).))	chr12:58005555-58005826(+)$1	1	22	52	12.9970
((((.((((((((....)))).))))..))	chr18:48556658-48556900(+)$1	1	2	32	10.9993
(.((((((..(((....)))...)))))).	chr19:5941711-5941960(-)$1	1	145	175	11.7066
((((.((((.(((....))))))).)))))	chr16:46919221-46919498(+)$1	1	240	270	10.7118
(((((..((((((....)))).))....).	chrX:151138445-151138694(-)$1	1	121	151	12.1313
.(((....(((((....)))))))))).))	chr3:10362368-10362634(-)$1	1	25	55	11.7685
....((...((((....))))...))....	chr17:17718137-17718374(-)$1	1	75	105	13.8608
(.(.((.(.((((...)))).).)).).))	chr16:4400928-4401191(-)$1	1	20	50	11.2074
.((.....(((((....)))))...)).))	chr12:120636230-120636475(-)$1	1	79	109	11.0967
((...((..(..(....)..)..))..)))	chr19:14529804-14530070(-)$1	1	32	62	10.7304
.(((.((((((((....))))).)))))).	chr9:116999853-117000108(+)$1	1	36	66	11.8547
((....(((((((...)))))))....)))	chr14:23445524-23445771(-)$1	1	126	156	9.7117
((((..(((.(((....)))..)))..)))	chr17:46022789-46023080(+)$1	1	236	266	11.2590
((((((((...((....)))))))))....	chr12:131356599-131356889(+)$1	1	238	268	10.3688
..((((((.((((...)))).))))))...	chr8:55013986-55014289(-)$1	1	80	110	10.4995
((((((((.((((....)))))))))))))	chr17:19459154-19459430(+)$1	1	164	194	13.9323
((.((((((((((....))))))))))..)	chr17:76122891-76123181(-)$1	1	175	205	11.7657
(.(((((((((((...))))))))))))))	chr17:27074103-27074372(+)$1	1	8	38	10.3517
(((((.(.(((((....))))).).))).)	chr3:197677018-197677302(+)$1	1	141	171	11.8622

#PSSM
d : 0.15	g : 0.13	c : 0.13	e : 0.11	# : 0.06	! : 0.06	f : 0.06	" : 0.05	[ : 0.05	$ : 0.03	b : 0.03	F : 0.01	: : 0.01	a : 0.01	h : 0.01	= : 0.01	
g : 0.18	c : 0.15	[ : 0.11	d : 0.11	e : 0.10	# : 0.08	! : 0.06	f : 0.06	$ : 0.03	b : 0.03	" : 0.01	= : 0.01	
c : 0.18	g : 0.16	f : 0.13	e : 0.11	d : 0.10	# : 0.08	[ : 0.06	! : 0.03	= : 0.03	$ : 0.01	a : 0.01	b : 0.01	" : 0.01	
c : 0.15	f : 0.15	g : 0.13	d : 0.13	e : 0.08	# : 0.08	[ : 0.06	= : 0.05	! : 0.03	b : 0.03	" : 0.03	$ : 0.03	
c : 0.15	g : 0.11	f : 0.11	[ : 0.10	b : 0.08	e : 0.06	d : 0.06	# : 0.06	! : 0.05	a : 0.05	= : 0.05	" : 0.03	$ : 0.03	
c : 0.15	d : 0.10	f : 0.10	g : 0.10	" : 0.08	b : 0.08	! : 0.06	[ : 0.06	e : 0.06	# : 0.06	= : 0.05	$ : 0.03	a : 0.01	
c : 0.13	g : 0.11	" : 0.11	d : 0.10	f : 0.08	# : 0.08	a : 0.06	! : 0.05	b : 0.05	e : 0.05	[ : 0.05	= : 0.05	$ : 0.03	
" : 0.16	! : 0.13	f : 0.10	g : 0.10	c : 0.08	a : 0.06	d : 0.06	# : 0.06	[ : 0.06	b : 0.05	= : 0.05	$ : 0.03	
[ : 0.18	! : 0.18	e : 0.16	" : 0.11	d : 0.06	g : 0.05	# : 0.05	f : 0.03	c : 0.03	b : 0.03	= : 0.03	$ : 0.01	a : 0.01	
d : 0.42	e : 0.16	c : 0.06	[ : 0.06	" : 0.06	g : 0.05	! : 0.05	# : 0.03	= : 0.03	f : 0.01	a : 0.01	
d : 0.44	c : 0.25	e : 0.16	g : 0.05	= : 0.03	f : 0.01	! : 0.01	" : 0.01	
d : 0.44	c : 0.25	e : 0.16	g : 0.03	= : 0.03	[ : 0.01	f : 0.01	! : 0.01	b : 0.01	
d : 0.44	c : 0.20	e : 0.16	a : 0.06	g : 0.03	= : 0.03	n : 0.01	f : 0.01	b : 0.01	
m : 0.77	l : 0.15	n : 0.03	c : 0.01	d : 0.01	
m : 0.79	l : 0.16	n : 0.03	
m : 0.79	l : 0.16	n : 0.03	
m : 0.79	d : 0.11	n : 0.03	l : 0.01	g : 0.01	= : 0.01	
d : 0.42	c : 0.20	e : 0.16	a : 0.06	g : 0.03	= : 0.03	m : 0.01	f : 0.01	n : 0.01	b : 0.01	
d : 0.44	c : 0.22	e : 0.16	] : 0.05	g : 0.03	= : 0.03	f : 0.01	2 : 0.01	b : 0.01	
d : 0.44	c : 0.25	e : 0.16	g : 0.06	= : 0.03	f : 0.01	2 : 0.01	
d : 0.33	e : 0.20	] : 0.10	2 : 0.06	c : 0.06	g : 0.06	3 : 0.05	4 : 0.03	= : 0.03	f : 0.01	a : 0.01	
e : 0.20	2 : 0.15	] : 0.11	3 : 0.11	g : 0.06	4 : 0.06	a : 0.05	f : 0.05	c : 0.05	d : 0.05	= : 0.05	b : 0.01	
3 : 0.15	2 : 0.13	] : 0.10	d : 0.10	4 : 0.10	c : 0.08	f : 0.08	g : 0.08	b : 0.05	e : 0.05	= : 0.05	
c : 0.13	4 : 0.11	g : 0.10	d : 0.10	3 : 0.10	f : 0.08	a : 0.08	b : 0.06	] : 0.05	e : 0.05	2 : 0.05	= : 0.05	
c : 0.20	g : 0.11	d : 0.11	4 : 0.11	f : 0.10	e : 0.06	b : 0.06	] : 0.06	= : 0.05	2 : 0.03	3 : 0.03	a : 0.01	
c : 0.16	g : 0.13	d : 0.11	f : 0.11	2 : 0.08	b : 0.08	4 : 0.08	] : 0.06	e : 0.05	= : 0.05	3 : 0.01	a : 0.01	
c : 0.15	g : 0.11	f : 0.11	2 : 0.10	4 : 0.10	e : 0.06	d : 0.06	b : 0.06	] : 0.05	3 : 0.05	= : 0.05	a : 0.03	8 : 0.01	
g : 0.13	] : 0.13	c : 0.13	d : 0.11	f : 0.10	4 : 0.10	2 : 0.08	e : 0.06	3 : 0.06	8 : 0.01	b : 0.01	= : 0.01	
g : 0.16	c : 0.16	d : 0.13	f : 0.10	e : 0.08	3 : 0.08	2 : 0.06	4 : 0.06	a : 0.05	b : 0.01	8 : 0.01	= : 0.01	] : 0.01	
g : 0.15	d : 0.15	c : 0.11	e : 0.11	f : 0.08	4 : 0.08	] : 0.06	3 : 0.05	2 : 0.05	: : 0.03	b : 0.03	a : 0.01	8 : 0.01	= : 0.01	

#score	687.8649879696227
#seq	59
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_UTR_m2_run2.txt

#BEAR
Feeeee[eeeeemmmmeeeee333eeee	chr7:151216103-151216386(-)$1	283	7	35	9.6991
::::ccc[ddddmmmmdddd]ccceeee	chr8:30669838-30670090(-)$1	252	175	203	7.9791
dddd[cccddddmmmmdddd]cccdddd	chr16:31044940-31045257(+)$1	317	20	48	11.3106
fffff[a[ddddmmmmdddd]a]fffff	chr19:2270097-2270395(+)$1	298	215	243	11.5168
b]ffffffddddmmmmdddd:ffffff[	chr12:7037365-7037609(+)$1	244	165	193	9.0394
::eeeee[ddddmmmmdddd333eeeee	chr11:3013145-3013465(-)$1	320	290	318	9.6788
eeeee]eeeee]ccc]dddd]ccc22ee	chr11:75111417-75111624(+)$1	207	113	141	6.8685
ddd[a[ffffffmmmmffffff]a22dd	chr15:64752848-64753083(+)$1	235	132	160	7.3981
ddd!!a[eeeeemmmmeeeeea22dddd	chr22:20067992-20068268(+)$1	276	190	218	9.5785
c]eeeee]dddd]a22dddd]ccc]ddd	chr19:1407621-1407886(+)$1	265	55	83	7.2642
ccc[bb"""ddddllldddd333bbccc	chr19:54970918-54971156(+)$1	238	47	75	9.6769
fff####ddddnnnnndddd333fffff	chr19:18547997-18548296(-)$1	299	47	75	9.4155
ddbb####ddddmmmmdddd4444bb]d	chr12:109124822-109125061(-)$1	239	110	138	11.0375
dddd[bb!!cccmmmmccc]bb]dddd:	chrX:152953475-152953706(+)$1	231	39	67	6.9214
hhhhhhhhddddmmmmdddd333hhhhh	chr1:27022552-27022811(+)$1	259	29	57	9.1159
[ffffffccc[ammmma]ccc]ffffff	chr17:73775389-73775800(-)$1	411	256	284	7.9464
eeeee]eeeee]ccc]dddd]ccc22ee	chr11:75111366-75111572(+)$1	206	164	192	6.8685
"ccc[a[eeeeemmmmeeeee]a]ccc6	chr2:54197784-54198040(-)$1	256	92	120	8.9602
::ffffffddddmmmmdddd22ffffff	chr17:46653875-46654119(-)$1	244	200	228	8.5811
C===========nnnnn===========	chr1:249151662-249151908(-)$1	246	54	82	6.1674
dddd:gggggggmmmmgggggggccc!!	chr19:575243-575523(+)$1	280	220	248	7.0557
[bbbb####cccmmmmccc22bb]bb]d	chr11:64014149-64014454(-)$1	305	249	277	7.4507
FFFbb[cccddddllldddd]ccc]bbb	chr11:75283135-75283404(+)$1	269	79	107	8.4047
[a"""ccc[ddddllldddd]ccc22a]	chr2:97535541-97535801(-)$1	260	6	34	10.2692
hhhhhhh[ddddmmmmdddd]hhhhhhh	chr19:34287171-34287445(+)$1	274	145	173	8.5195
ggggggg[ddddmmmmdddd]ggggggg	chr17:7477067-7477321(+)$1	254	86	114	11.3609
ddd####eeeeemmmmeeeee333dddd	chr19:18547932-18548197(-)$1	265	16	44	10.2296
cc####bb[cccmmmmccc]bb4444cc	chr4:174255111-174255413(-)$1	302	199	227	8.6320
eeeee]eeeee]ccc]dddd]ccc22ee	chr11:75111387-75111617(+)$1	230	143	171	6.8685
dd[bb!!bbcccmmmmccc]bb22bb]d	chr22:19418918-19419254(-)$1	336	276	304	7.4916
Bccc[ccc[cccnnnnnccc]ccc]ccc	chrX:152954279-152954567(+)$1	288	238	266	6.9896
]ffffff==============333bb]c	chr5:138629681-138629966(+)$1	285	126	154	6.3219
ffff!!bb[ddddllldddd]bb22fff	chr6:31802927-31803205(+)$1	278	140	168	9.3841
[dddd[ddddoooooodddd]dddd]cc	chr9:126692129-126692438(-)$1	309	280	308	8.4376
fffff[a[ddddmmmmdddd]a]fffff	chr19:2270202-2270434(+)$1	232	110	138	11.5168
eeeee"""ddddmmmmdddd]eeeee22	chr19:5719720-5720101(-)$1	381	279	307	10.3033
ddd####eeeeellleeeee4444dddd	chr19:1652281-1652538(-)$1	257	1	29	8.8821
ee[ccc[eeeeemmmmeeeeeccc]eee	chr5:154136577-154136852(+)$1	275	159	187	9.7627
dddd[ggggggglllggggggg333ddd	chr12:116714894-116715192(-)$1	298	79	107	7.9010
ff[ccc[eeeeemmmmeeeeeccc22ff	chr8:145650750-145651027(-)$1	277	49	77	9.4906
ee####ccccccmmmmccc]ccceeeee	chr19:18547577-18547844(-)$1	267	41	69	9.0932
ffffffddddoooooodddd]ffffff]	chr3:128211717-128211962(+)$1	245	204	232	8.7399
'''''ccc[ddddllldddd]ccc333d	chr11:75111429-75111648(+)$1	219	169	197	7.7945
gg:eeeeeddddoooooodddd22eeee	chr7:5569348-5569622(-)$1	274	167	195	7.1239
fffff[ddddoooooodddd]ffffff:	chr1:26232172-26232446(-)$1	274	62	90	8.1147

#otherMatches

#Seq PSSM
GGCGGCGUCCGCGCCGGUGGAGGAGCCG	chr7:151216103-151216386(-)$1	283	7	35	9.6991
AGGAGCUGGACCAGUGGGUCGAGCAGCU	chr8:30669838-30670090(-)$1	252	175	203	7.9791
UCCCAUUGACUGUGGGCGGUGCAAGGGA	chr16:31044940-31045257(+)$1	317	20	48	11.3106
AGCGUGCGCUGCGGGAGCGGGGAGCGCU	chr19:2270097-2270395(+)$1	298	215	243	11.5168
UCCCGAGCUACCAGCAGGUAAGGUCUgc	chr12:7037365-7037609(+)$1	244	165	193	9.0394
GGCCUCCUGGGCGGCGGCCCCUUGGAGG	chr11:3013145-3013465(-)$1	320	290	318	9.6788
CCUGGUUGAAGUAAUUUCCUAAAGAUGA	chr11:75111417-75111624(+)$1	207	113	141	6.8685
UCUAcggcccggggccccgggcgggcgg	chr15:64752848-64753083(+)$1	235	132	160	7.3981
CCUAGCAUCGCCUUCAGGCGGGAAAGGU	chr22:20067992-20068268(+)$1	276	190	218	9.5785
CCGCGGCUGUGGGGAGGGCGACGGAGCG	chr19:1407621-1407886(+)$1	265	55	83	7.2642
GGAUGUGGGGUGCCGUGCACAGAGCUCC	chr19:54970918-54971156(+)$1	238	47	75	9.6769
UCUGGAGGCCUGUAGUGGGCGAGGGACC	chr19:18547997-18548296(-)$1	299	47	75	9.4155
AAGCAGGGUCCCUGUGGGGAGGAGGCUU	chr12:109124822-109125061(-)$1	239	110	138	11.0375
ccgccaccaccgccaccgGAGUCGCGGG	chrX:152953475-152953706(+)$1	231	39	67	6.9214
UCAUUCCCAGGCAAGGGCUUGGGGGGAA	chr1:27022552-27022811(+)$1	259	29	57	9.1159
UCCCGACGCCGGGUUCCGGGCAGUCGGG	chr17:73775389-73775800(-)$1	411	256	284	7.9464
CCUGGUUGAAGUAAUUUCCUAAAGAUGA	chr11:75111366-75111572(+)$1	206	164	192	6.8685
ggggguggggggggugUCCCUGGGCUCA	chr2:54197784-54198040(-)$1	256	92	120	8.9602
AGCUUUAUUUAUAGAAAUGACAAUAGAG	chr17:46653875-46654119(-)$1	244	200	228	8.5811
CUCAGGAUCUAGUGUGUCUAGGUUCUGA	chr1:249151662-249151908(-)$1	246	54	82	6.1674
CCCGAGGGUGGAGGGCUUCACCCCCGAG	chr19:575243-575523(+)$1	280	220	248	7.0557
GUCCCGGAGGCGGUGGCGCAGGGAGGGG	chr11:64014149-64014454(-)$1	305	249	277	7.4507
UACCAGCCUUGGAUACUCCAUGGGGUGG	chr11:75283135-75283404(+)$1	269	79	107	8.4047
GUGGUGGCGCGGGGAGCCCGAGCCUAgg	chr2:97535541-97535801(-)$1	260	6	34	10.2692
CGCGUUUUUGUCGCCAGGCGCGGGCGCG	chr19:34287171-34287445(+)$1	274	145	173	8.5195
UGGGGGGAAGGGGAUGUCCUACCCUCCG	chr17:7477067-7477321(+)$1	254	86	114	11.3609
GGGCGGGGCCUGGCUGCAGGCGGACCCC	chr19:18547932-18548197(-)$1	265	16	44	10.2296
UUUUCAAUGUCGGUCACGAGGUGCUUAG	chr4:174255111-174255413(-)$1	302	199	227	8.6320
CCUGGUUGAAGUAAUUUCCUAAAGAUGA	chr11:75111387-75111617(+)$1	230	143	171	6.8685
UGGGUCAACCACAAUGGUGAGUGCGCGC	chr22:19418918-19419254(-)$1	336	276	304	7.4916
CCCGCGAGGCUGCCCCCCAGACUCCCGG	chrX:152954279-152954567(+)$1	288	238	266	6.9896
CUUCCUGCGCGUCCUGGGCUCGUUGUGG	chr5:138629681-138629966(+)$1	285	126	154	6.3219
GUGUGUCGCUGAUGCCAUCACCGCAGCG	chr6:31802927-31803205(+)$1	278	140	168	9.3841
gccgggccgggcggagccgggccgggcg	chr9:126692129-126692438(-)$1	309	280	308	8.4376
AGCGUGCGCUGCGGGAGCGGGGAGCGCU	chr19:2270202-2270434(+)$1	232	110	138	11.5168
GUCAUAACGGCGCUCACGCCCAUGACGA	chr19:5719720-5720101(-)$1	381	279	307	10.3033
cgggcaccgcgggcaccgcgcacgccgc	chr19:1652281-1652538(-)$1	257	1	29	8.8821
UGGUGCCUCCCCGCGCGGGGAGCGGCAU	chr5:154136577-154136852(+)$1	275	159	187	9.7627
ggcgcggcgucgccgcggcgccucccgc	chr12:116714894-116715192(-)$1	298	79	107	7.9010
GGAGGCACCCACUUGUGUGGGGCCCACC	chr8:145650750-145651027(-)$1	277	49	77	9.4906
CCAACGACCUCGUGUUCGAUGGUGGGCG	chr19:18547577-18547844(-)$1	267	41	69	9.0932
CCUGGUGGGCGACGGGGCCCUGCUAGGA	chr3:128211717-128211962(+)$1	245	204	232	8.7399
UGGAACAAGGGUUUGGAACCAUUGGUUG	chr11:75111429-75111648(+)$1	219	169	197	7.7945
CCAGUGUUUGCCUUUUAUGGUAAUAACG	chr7:5569348-5569622(-)$1	274	167	195	7.1239
UGUCUUCGCGGCCGGACGCGCGGACAGC	chr1:26232172-26232446(-)$1	274	62	90	8.1147

#DB
((((((.(((((....)))))...))))	chr7:151216103-151216386(-)$1	1	7	35	9.6991
....(((.((((....)))).)))((((	chr8:30669838-30670090(-)$1	1	175	203	7.9791
((((.(((((((....)))).)))))))	chr16:31044940-31045257(+)$1	1	20	48	11.3106
(((((.(.((((....)))).).)))))	chr19:2270097-2270395(+)$1	1	215	243	11.5168
).))))))((((....)))).((((((.	chr12:7037365-7037609(+)$1	1	165	193	9.0394
..(((((.((((....))))...)))))	chr11:3013145-3013465(-)$1	1	290	318	9.6788
))))).))))).))).)))).)))..))	chr11:75111417-75111624(+)$1	1	113	141	6.8685
(((.(.((((((....)))))).)..))	chr15:64752848-64753083(+)$1	1	132	160	7.3981
(((..(.(((((....))))))..))))	chr22:20067992-20068268(+)$1	1	190	218	9.5785
).))))).)))).)..)))).))).)))	chr19:1407621-1407886(+)$1	1	55	83	7.2642
(((.((...((((...))))...)))))	chr19:54970918-54971156(+)$1	1	47	75	9.6769
(((....((((.....))))...)))))	chr19:18547997-18548296(-)$1	1	47	75	9.4155
((((....((((....))))....)).)	chr12:109124822-109125061(-)$1	1	110	138	11.0375
((((.((..(((....))).)).)))).	chrX:152953475-152953706(+)$1	1	39	67	6.9214
((((((((((((....))))...)))))	chr1:27022552-27022811(+)$1	1	29	57	9.1159
.(((((((((.(....).))).))))))	chr17:73775389-73775800(-)$1	1	256	284	7.9464
))))).))))).))).)))).)))..))	chr11:75111366-75111572(+)$1	1	164	192	6.8685
.(((.(.(((((....))))).).))).	chr2:54197784-54198040(-)$1	1	92	120	8.9602
..((((((((((....))))..))))))	chr17:46653875-46654119(-)$1	1	200	228	8.5811
((((((((((((.....)))))))))))	chr1:249151662-249151908(-)$1	1	54	82	6.1674
)))).(((((((....)))))))(((..	chr19:575243-575523(+)$1	1	220	248	7.0557
.((((....(((....)))..)).)).)	chr11:64014149-64014454(-)$1	1	249	277	7.4507
(((((.(((((((...)))).))).))(	chr11:75283135-75283404(+)$1	1	79	107	8.4047
.(...(((.((((...)))).)))..).	chr2:97535541-97535801(-)$1	1	6	34	10.2692
(((((((.((((....)))).)))))))	chr19:34287171-34287445(+)$1	1	145	173	8.5195
(((((((.((((....)))).)))))))	chr17:7477067-7477321(+)$1	1	86	114	11.3609
(((....(((((....)))))...))))	chr19:18547932-18548197(-)$1	1	16	44	10.2296
((....((.(((....))).))....))	chr4:174255111-174255413(-)$1	1	199	227	8.6320
))))).))))).))).)))).)))..))	chr11:75111387-75111617(+)$1	1	143	171	6.8685
((.((..(((((....))).))..)).)	chr22:19418918-19419254(-)$1	1	276	304	7.4916
)(((.(((.(((.....))).))).)))	chrX:152954279-152954567(+)$1	1	238	266	6.9896
.))))))))))))))))))))...)).)	chr5:138629681-138629966(+)$1	1	126	154	6.3219
((((..((.((((...)))).))..)))	chr6:31802927-31803205(+)$1	1	140	168	9.3841
.((((.((((......)))).)))).))	chr9:126692129-126692438(-)$1	1	280	308	8.4376
(((((.(.((((....)))).).)))))	chr19:2270202-2270434(+)$1	1	110	138	11.5168
(((((...((((....)))).)))))..	chr19:5719720-5720101(-)$1	1	279	307	10.3033
(((....(((((...)))))....))))	chr19:1652281-1652538(-)$1	1	1	29	8.8821
((.(((.(((((....)))))))).)))	chr5:154136577-154136852(+)$1	1	159	187	9.7627
((((.(((((((...)))))))...)))	chr12:116714894-116715192(-)$1	1	79	107	7.9010
((.(((.(((((....))))))))..))	chr8:145650750-145651027(-)$1	1	49	77	9.4906
((....((((((....))).))))))))	chr19:18547577-18547844(-)$1	1	41	69	9.0932
((((((((((......)))).)))))).	chr3:128211717-128211962(+)$1	1	204	232	8.7399
.....(((.((((...)))).)))...)	chr11:75111429-75111648(+)$1	1	169	197	7.7945
)).(((((((((......))))..))))	chr7:5569348-5569622(-)$1	1	167	195	7.1239
(((((.((((......)))).)))))).	chr1:26232172-26232446(-)$1	1	62	90	8.1147

#PSSM
d : 0.22	f : 0.15	e : 0.13	[ : 0.08	: : 0.06	c : 0.06	F : 0.04	h : 0.04	g : 0.04	b : 0.02	" : 0.02	C : 0.02	B : 0.02	] : 0.02	' : 0.02	
d : 0.24	f : 0.20	e : 0.15	c : 0.08	: : 0.06	] : 0.04	h : 0.04	g : 0.04	= : 0.02	b : 0.02	F : 0.02	a : 0.02	' : 0.02	
f : 0.22	d : 0.20	e : 0.15	c : 0.06	[ : 0.06	: : 0.04	b : 0.04	h : 0.04	# : 0.04	= : 0.02	F : 0.02	" : 0.02	g : 0.02	' : 0.02	
f : 0.20	e : 0.17	d : 0.11	# : 0.11	b : 0.08	c : 0.08	[ : 0.04	h : 0.04	: : 0.02	! : 0.02	= : 0.02	" : 0.02	g : 0.02	' : 0.02	
e : 0.17	f : 0.17	# : 0.13	[ : 0.11	b : 0.08	c : 0.06	! : 0.04	h : 0.04	a : 0.02	= : 0.02	: : 0.02	" : 0.02	g : 0.02	d : 0.02	' : 0.02	
c : 0.15	# : 0.15	[ : 0.13	f : 0.11	e : 0.08	] : 0.06	g : 0.06	a : 0.04	b : 0.04	h : 0.04	! : 0.04	= : 0.02	" : 0.02	
c : 0.15	e : 0.13	[ : 0.11	f : 0.11	# : 0.11	b : 0.06	g : 0.06	d : 0.06	a : 0.04	" : 0.04	h : 0.04	= : 0.02	! : 0.02	
e : 0.24	c : 0.15	[ : 0.13	d : 0.08	f : 0.06	b : 0.06	" : 0.04	# : 0.04	= : 0.04	g : 0.04	] : 0.02	! : 0.02	h : 0.02	
d : 0.39	e : 0.22	[ : 0.11	c : 0.06	= : 0.04	g : 0.04	f : 0.02	" : 0.02	! : 0.02	# : 0.02	b : 0.02	
d : 0.51	e : 0.22	c : 0.15	= : 0.04	g : 0.04	f : 0.02	
d : 0.44	e : 0.22	c : 0.13	o : 0.06	= : 0.04	g : 0.04	f : 0.02	[ : 0.02	
d : 0.42	e : 0.15	c : 0.13	] : 0.06	o : 0.06	= : 0.04	g : 0.04	f : 0.02	n : 0.02	a : 0.02	
m : 0.57	d : 0.11	o : 0.08	c : 0.06	n : 0.06	l : 0.04	] : 0.02	= : 0.02	
m : 0.57	l : 0.15	o : 0.08	c : 0.06	n : 0.06	a : 0.02	= : 0.02	
m : 0.57	l : 0.15	o : 0.08	c : 0.06	n : 0.06	2 : 0.02	= : 0.02	
m : 0.57	l : 0.11	o : 0.08	] : 0.06	n : 0.06	2 : 0.02	= : 0.02	e : 0.02	g : 0.02	
d : 0.55	e : 0.15	c : 0.11	n : 0.04	g : 0.04	f : 0.02	a : 0.02	= : 0.02	o : 0.02	
d : 0.55	e : 0.15	c : 0.13	= : 0.04	g : 0.04	f : 0.02	] : 0.02	o : 0.02	
d : 0.57	e : 0.15	c : 0.15	= : 0.04	g : 0.04	f : 0.02	
d : 0.57	e : 0.15	] : 0.08	c : 0.04	= : 0.04	g : 0.04	f : 0.02	2 : 0.02	
] : 0.42	e : 0.13	3 : 0.08	b : 0.06	4 : 0.04	c : 0.04	2 : 0.04	= : 0.04	g : 0.04	: : 0.02	f : 0.02	d : 0.02	
c : 0.28	3 : 0.15	b : 0.11	f : 0.08	a : 0.06	g : 0.06	4 : 0.04	] : 0.04	d : 0.04	2 : 0.02	= : 0.02	h : 0.02	e : 0.02	
c : 0.28	3 : 0.17	f : 0.11	] : 0.08	2 : 0.06	4 : 0.06	g : 0.04	b : 0.04	a : 0.02	= : 0.02	h : 0.02	d : 0.02	e : 0.02	
c : 0.28	f : 0.17	3 : 0.08	2 : 0.08	e : 0.06	4 : 0.06	d : 0.04	h : 0.04	] : 0.04	a : 0.02	b : 0.02	= : 0.02	g : 0.02	
f : 0.17	2 : 0.15	e : 0.13	d : 0.13	b : 0.11	] : 0.08	h : 0.04	c : 0.04	3 : 0.04	= : 0.02	g : 0.02	4 : 0.02	
f : 0.20	e : 0.15	d : 0.15	2 : 0.13	b : 0.11	c : 0.08	h : 0.04	= : 0.02	g : 0.02	4 : 0.02	] : 0.02	3 : 0.02	
f : 0.22	e : 0.20	d : 0.17	c : 0.11	] : 0.08	h : 0.04	= : 0.02	! : 0.02	b : 0.02	a : 0.02	g : 0.02	2 : 0.02	3 : 0.02	
d : 0.24	e : 0.20	f : 0.15	c : 0.11	: : 0.04	h : 0.04	] : 0.04	[ : 0.02	6 : 0.02	= : 0.02	! : 0.02	b : 0.02	g : 0.02	2 : 0.02	

#score	391.1644227375511
#seq	45
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_CDS_m1_run1.txt

#BEAR
!!bb[cccmmmmccc]bb333	chr14:94849054-94849325(-)$1	271	160	181	7.4410
$$$$$cccnnnnnccc4444c	chr17:26697115-26697386(-)$1	271	80	101	12.1799
c[bb[ccclllccc]bb4444	chr2:216236535-216236781(-)$1	246	168	189	8.4035
eee!!cccnnnnnccceeeee	chr3:186336268-186336485(+)$1	217	105	126	11.3643
gccc[cccnnnnncccccc::	chr7:45930047-45930262(+)$1	215	95	116	9.8583
!ccc[cccnnnnncccccc22	chr2:216251327-216251623(-)$1	296	71	92	11.5655
eee!!cccnnnnnccceeeee	chr3:186336224-186336432(+)$1	208	149	170	11.3643
"ccc[cccnnnnnccc]ccc]	chr2:216262367-216262615(-)$1	248	42	63	11.9465
[dddd[bbnnnnnbb]dddd2	chr10:73587755-73587992(-)$1	237	172	193	8.0240
dddd[cccnnnnnccc]dddd	chr2:216300324-216300541(-)$1	217	111	132	10.9310
$$ccccccnnnnnccc]ccc5	chr8:11704493-11704767(-)$1	274	150	171	10.6479
=[a!!cccnnnnnccc22a]=	chr2:21228361-21228614(-)$1	253	55	76	12.1290
d"""ddddnnnnndddddddd	chr9:124065095-124065404(+)$1	309	113	134	10.0506
c[bb!!ccclllccc22bbcc	chr12:57598344-57598575(+)$1	231	103	124	7.1518
[ccc[ccclllccc]ccc]cc	chrX:132887833-132888119(-)$1	286	239	260	8.5973
$$$eeeeennnnneeeeeeee	chr2:216271784-216272023(-)$1	239	50	71	8.2252
[bb!!cccnnnnnccc66666	chr1:230839973-230840183(-)$1	210	58	79	10.6055
iiia[cccnnnnnccc]a]ii	chr1:230845951-230846193(-)$1	242	138	159	11.8479
a"""cccooooooccc4444a	chr8:27457234-27457491(-)$1	257	148	169	9.8057
eee"""bboooooobb]eeee	chr2:216279459-216279686(-)$1	227	98	119	6.6902
eebb[ccclllccc]bb333e	chr1:980493-980760(+)$1	267	214	235	7.9220
####ddddnnnnndddd4444	chr2:216286789-216287023(-)$1	234	126	147	11.4358
a[ffffffnnnnnffffff]a	chr20:23614428-23614687(-)$1	259	223	244	8.5955
ccc[ddddnnnnndddd]ccc	chr14:95089953-95090230(+)$1	277	109	130	10.0335
eee!!cccnnnnnccceeeee	chr3:186336248-186336468(+)$1	220	125	146	11.3643
f####ddddllldddd4444f	chr2:216243911-216244140(-)$1	229	156	177	8.3937
ddddddddnnnnndddd]ddd	chr1:8926451-8926661(-)$1	210	0	21	9.1348
[bb!!cccnnnnnccc66666	chr1:230839951-230840164(-)$1	213	39	60	10.6055
[a[a[ddddllldddd]a]ad	chr2:216247990-216248261(-)$1	271	84	105	7.9253
[ccc[ddddllldddd333cc	chr6:132271814-132272059(-)$1	245	75	96	8.3115
eeeeddddoooooodddd]ee	chr17:1675097-1675358(+)$1	261	1	22	6.7186
b[ffffffnnnnnffffff]b	chr17:79803646-79803859(-)$1	213	141	162	7.9660
eee!!cccnnnnnccceeeee	chr3:186336232-186336448(+)$1	216	141	162	11.3643
:ccc[cccnnnnnccc333cc	chr6:31903634-31903888(+)$1	254	190	211	11.4664
ddd[ddddnnnnndddddddd	chr6:132271466-132271694(-)$1	228	110	131	9.3639
ffff!!aooooooa333ffff	chr17:64224115-64224331(-)$1	216	82	103	6.6577
c####cccmmmmccccccddd	chr2:216246836-216247078(-)$1	242	95	116	7.6276

#otherMatches

#Seq PSSM
CCACCGGCAAUGGCCUGUUCC	chr14:94849054-94849325(-)$1	271	160	181	7.4410
CCCUCCCUUCCUCAGGCAUCA	chr17:26697115-26697386(-)$1	271	80	101	12.1799
CACUUCUCAUGGGGCAGCACA	chr2:216236535-216236781(-)$1	246	168	189	8.4035
GUGUUGCUAAAGAGGCCACAG	chr3:186336268-186336485(+)$1	217	105	126	11.3643
CCAGAGGCAGGGAGCCCUGAA	chr7:45930047-45930262(+)$1	215	95	116	9.8583
GACCUCGAGAAGAUCGGGUGC	chr2:216251327-216251623(-)$1	296	71	92	11.5655
GUGUUGCUAAAGAGGCCACAG	chr3:186336224-186336432(+)$1	208	149	170	11.3643
AGCUGGGUGUACGACCAAGCC	chr2:216262367-216262615(-)$1	248	42	63	11.9465
AACAUGUCAAGGAGGAGUGUG	chr10:73587755-73587992(-)$1	237	172	193	8.0240
GGCUCAGCAAAUGGUUCAGCC	chr2:216300324-216300541(-)$1	217	111	132	10.9310
ACGGCCCCGUGGAGGGAGCUU	chr8:11704493-11704767(-)$1	274	150	171	10.6479
UGAUAAAUUCAUUAUUCCUGG	chr2:21228361-21228614(-)$1	253	55	76	12.1290
GAGAGCGGGGCGGCCGCCAUC	chr9:124065095-124065404(+)$1	309	113	134	10.0506
AAGAAUGACCGCGUCUGUCUG	chr12:57598344-57598575(+)$1	231	103	124	7.1518
AAGUCACUGCAAGUCACUAGG	chrX:132887833-132888119(-)$1	286	239	260	8.5973
UCCGUCACCCUCAGUGACUUG	chr2:216271784-216272023(-)$1	239	50	71	8.2252
UGUGUGGCCUGGAGCCUUCCU	chr1:230839973-230840183(-)$1	210	58	79	10.6055
UGUCUGCCCUGCAGGCUGUAC	chr1:230845951-230846193(-)$1	242	138	159	11.8479
CAAACCUCACGCAAGGCGAAG	chr8:27457234-27457491(-)$1	257	148	169	9.8057
UUUCCAAGUACAUUCUCAGGU	chr2:216279459-216279686(-)$1	227	98	119	6.6902
CACGUGACCUUGUCCUGCCCU	chr1:980493-980760(+)$1	267	214	235	7.9220
AUGACAUGGGUCACAUGAUGA	chr2:216286789-216287023(-)$1	234	126	147	11.4358
CUUGGGGAAGGUCUCCCCAUG	chr20:23614428-23614687(-)$1	259	223	244	8.5955
UCAACAGGCCCUUCCUGAUGA	chr14:95089953-95090230(+)$1	277	109	130	10.0335
GUGUUGCUAAAGAGGCCACAG	chr3:186336248-186336468(+)$1	220	125	146	11.3643
GCCCAGUGGACACCACCCAAU	chr2:216243911-216244140(-)$1	229	156	177	8.3937
CUCAUCUGUGAGCUAGAUUGG	chr1:8926451-8926661(-)$1	210	0	21	9.1348
UGUGUGGCCUGGAGCCUUCCU	chr1:230839951-230840164(-)$1	213	39	60	10.6055
ACCGAUGUUCAGGACAACAGC	chr2:216247990-216248261(-)$1	271	84	105	7.9253
ACCCAUGCGACCCGCACAAGG	chr6:132271814-132272059(-)$1	245	75	96	8.3115
AGGCUCUCAAAGACGGGAUGC	chr17:1675097-1675358(+)$1	261	1	22	6.7186
UCCGUGCCACCAGGGCACGCG	chr17:79803646-79803859(-)$1	213	141	162	7.9660
GUGUUGCUAAAGAGGCCACAG	chr3:186336232-186336448(+)$1	216	141	162	11.3643
UGCCAACUAUAAAGGUACGGG	chr6:31903634-31903888(+)$1	254	190	211	11.4664
CGGUGGGCUGCAUGCCCCUGU	chr6:132271466-132271694(-)$1	228	110	131	9.3639
GGAGAAGAGAUUACGUAUUCC	chr17:64224115-64224331(-)$1	216	82	103	6.6577
CAGAAUCCAAGCGGAGAGAGU	chr2:216246836-216247078(-)$1	242	95	116	7.6276

#DB
..((.(((....))).))...	chr14:94849054-94849325(-)$1	1	160	181	7.4410
.....(((.....)))....)	chr17:26697115-26697386(-)$1	1	80	101	12.1799
(.((.(((...))).))....	chr2:216236535-216236781(-)$1	1	168	189	8.4035
(((..(((.....))))))))	chr3:186336268-186336485(+)$1	1	105	126	11.3643
)(((.(((.....))))))..	chr7:45930047-45930262(+)$1	1	95	116	9.8583
.(((.(((.....))))))..	chr2:216251327-216251623(-)$1	1	71	92	11.5655
(((..(((.....))))))))	chr3:186336224-186336432(+)$1	1	149	170	11.3643
.(((.(((.....))).))).	chr2:216262367-216262615(-)$1	1	42	63	11.9465
.((((.((.....)).)))).	chr10:73587755-73587992(-)$1	1	172	193	8.0240
((((.(((.....))).))))	chr2:216300324-216300541(-)$1	1	111	132	10.9310
..((((((.....))).))).	chr8:11704493-11704767(-)$1	1	150	171	10.6479
(.(..(((.....)))..).)	chr2:21228361-21228614(-)$1	1	55	76	12.1290
(...((((.....))))))))	chr9:124065095-124065404(+)$1	1	113	134	10.0506
(.((..(((...)))..))))	chr12:57598344-57598575(+)$1	1	103	124	7.1518
.(((.(((...))).))).))	chrX:132887833-132888119(-)$1	1	239	260	8.5973
...(((((.....))))))))	chr2:216271784-216272023(-)$1	1	50	71	8.2252
.((..(((.....))).....	chr1:230839973-230840183(-)$1	1	58	79	10.6055
((((.(((.....))).).))	chr1:230845951-230846193(-)$1	1	138	159	11.8479
(...(((......)))....)	chr8:27457234-27457491(-)$1	1	148	169	9.8057
(((...((......)).))))	chr2:216279459-216279686(-)$1	1	98	119	6.6902
((((.(((...))).))...)	chr1:980493-980760(+)$1	1	214	235	7.9220
....((((.....))))....	chr2:216286789-216287023(-)$1	1	126	147	11.4358
(.((((((.....)))))).)	chr20:23614428-23614687(-)$1	1	223	244	8.5955
(((.((((.....)))).)))	chr14:95089953-95090230(+)$1	1	109	130	10.0335
(((..(((.....))))))))	chr3:186336248-186336468(+)$1	1	125	146	11.3643
(....((((...))))....)	chr2:216243911-216244140(-)$1	1	156	177	8.3937
((((((((.....)))).)))	chr1:8926451-8926661(-)$1	1	0	21	9.1348
.((..(((.....))).....	chr1:230839951-230840164(-)$1	1	39	60	10.6055
.(.(.((((...)))).).))	chr2:216247990-216248261(-)$1	1	84	105	7.9253
.(((.((((...))))...))	chr6:132271814-132272059(-)$1	1	75	96	8.3115
((((((((......)))).))	chr17:1675097-1675358(+)$1	1	1	22	6.7186
(.((((((.....)))))).)	chr17:79803646-79803859(-)$1	1	141	162	7.9660
(((..(((.....))))))))	chr3:186336232-186336448(+)$1	1	141	162	11.3643
.(((.(((.....)))...))	chr6:31903634-31903888(+)$1	1	190	211	11.4664
(((.((((.....))))))))	chr6:132271466-132271694(-)$1	1	110	131	9.3639
((((..(......)...))))	chr17:64224115-64224331(-)$1	1	82	103	6.6577
(....(((....))))))(((	chr2:216246836-216247078(-)$1	1	95	116	7.6276

#PSSM
e : 0.18	[ : 0.16	c : 0.10	d : 0.10	$ : 0.08	! : 0.05	a : 0.05	f : 0.05	g : 0.02	" : 0.02	= : 0.02	i : 0.02	# : 0.02	b : 0.02	: : 0.02	
e : 0.18	c : 0.18	[ : 0.13	d : 0.10	$ : 0.08	# : 0.08	" : 0.05	b : 0.05	! : 0.02	i : 0.02	a : 0.02	f : 0.02	
c : 0.21	b : 0.16	e : 0.16	d : 0.10	# : 0.08	f : 0.08	$ : 0.05	" : 0.05	a : 0.02	i : 0.02	[ : 0.02	
! : 0.18	c : 0.18	b : 0.10	d : 0.08	" : 0.08	# : 0.08	f : 0.08	e : 0.05	a : 0.05	[ : 0.05	$ : 0.02	
[ : 0.32	! : 0.24	d : 0.18	c : 0.05	f : 0.05	# : 0.05	$ : 0.02	e : 0.02	" : 0.02	
c : 0.56	d : 0.24	! : 0.05	f : 0.05	[ : 0.02	e : 0.02	" : 0.02	
c : 0.59	d : 0.24	b : 0.05	f : 0.05	e : 0.02	a : 0.02	
c : 0.56	d : 0.24	b : 0.05	o : 0.05	f : 0.05	e : 0.02	
n : 0.64	o : 0.10	l : 0.08	d : 0.08	m : 0.05	c : 0.02	
n : 0.64	l : 0.18	o : 0.10	m : 0.05	
n : 0.64	l : 0.18	o : 0.10	m : 0.05	
n : 0.64	l : 0.10	o : 0.10	c : 0.08	m : 0.05	
n : 0.64	c : 0.16	o : 0.10	d : 0.08	
c : 0.59	d : 0.21	o : 0.05	f : 0.05	b : 0.02	e : 0.02	a : 0.02	
c : 0.51	d : 0.24	] : 0.08	b : 0.05	f : 0.05	e : 0.02	3 : 0.02	
c : 0.48	d : 0.24	b : 0.08	] : 0.05	f : 0.05	2 : 0.02	e : 0.02	3 : 0.02	
d : 0.18	] : 0.16	e : 0.13	c : 0.10	b : 0.08	4 : 0.08	3 : 0.08	2 : 0.05	6 : 0.05	f : 0.05	
e : 0.16	c : 0.16	4 : 0.13	d : 0.13	3 : 0.08	f : 0.08	b : 0.05	6 : 0.05	a : 0.05	] : 0.05	2 : 0.02	
e : 0.16	d : 0.16	4 : 0.13	c : 0.13	3 : 0.10	] : 0.10	f : 0.08	6 : 0.05	a : 0.02	b : 0.02	
e : 0.18	c : 0.18	d : 0.16	4 : 0.13	] : 0.08	3 : 0.05	6 : 0.05	: : 0.02	2 : 0.02	i : 0.02	a : 0.02	f : 0.02	
e : 0.21	c : 0.16	d : 0.16	4 : 0.05	2 : 0.05	6 : 0.05	a : 0.05	f : 0.05	3 : 0.02	: : 0.02	] : 0.02	5 : 0.02	= : 0.02	i : 0.02	b : 0.02	

#score	353.7173653898565
#seq	37
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_transcript_m1_run2.txt

#BEAR
iiiiiuuuuuuuuuuuuiiiiii	chr9:136800210-136800489(-)$1	279	66	89	23.3574
fdddduuuuuuuuuuuudddd22	chr1:149858757-149858971(+)$1	214	59	82	22.2865
byyyyyyyyyyyyyyyybb333d	chr18:43664369-43664618(-)$1	249	46	69	19.4349
hhhhhvvvvvvvvvvvvvhhhhh	chr11:70835294-70835632(-)$1	338	260	283	20.6932
hhhhhhttttttttttthhhhhh	chr4:109543068-109543272(+)$1	204	90	113	20.3596
gyyyyyyyyyyyyyyyygggggg	chr12:65109678-65109997(-)$1	319	76	99	20.4049
"ddddwwwwwwwwwwwwwwdddd	chr6:33243518-33243724(+)$1	206	86	109	20.4934
[eeeeettttttttttteeeeec	chr6:143816875-143817084(-)$1	209	85	108	23.6788
cyyyyyyyyyyyyyyyycccggg	chr10:120828924-120829184(-)$1	260	94	117	20.4861
ggggggtttttttttttgggggg	chr8:99057153-99057369(-)$1	216	64	87	22.5730
eeeeevvvvvvvvvvvvveeeee	chr3:149087519-149087767(-)$1	248	138	161	23.0838
eeeewwwwwwwwwwwwwweeeee	chr3:58139064-58139293(+)$1	229	206	229	21.5589
eeeeevvvvvvvvvvvvveeeee	chr6:33243740-33243943(+)$1	203	146	169	23.0838
ff[ccctttttttttttcccfff	chr11:2154225-2154431(-)$1	206	121	144	22.4181
=====uuuuuuuuuuuu======	chr12:57593580-57593785(+)$1	205	45	68	23.5491
cddddtttttttttttdddd333	chr11:2153437-2153641(-)$1	204	8	31	21.2230
a[cccuuuuuuuuuuuuccc]a]	chr3:53260766-53260990(-)$1	224	82	105	23.3880
eeeeeuuuuuuuuuuuueeeee2	chr18:34378311-34378640(-)$1	329	191	214	23.9331
=====uuuuuuuuuuuu======	chr11:2152389-2152591(-)$1	202	158	181	23.5491
eeeeeuuuuuuuuuuuueeeee:	chr11:2153377-2153579(-)$1	202	129	152	23.2416
[eeeeettttttttttteeeee]	chr19:39924061-39924263(-)$1	202	65	88	23.7827
ggggggtttttttttttgggggg	chr9:139098514-139098786(-)$1	272	178	201	22.5730
!ddddwwwwwwwwwwwwwwdddd	chr2:21234624-21234833(-)$1	209	134	157	20.5859
eeeeeuuuuuuuuuuuueeeee:	chr11:2153371-2153577(-)$1	206	127	150	23.2416
ggggvvvvvvvvvvvvvgggggg	chr1:160268876-160269093(-)$1	217	69	92	22.1952
:eeeeettttttttttteeeee:	chr11:2152616-2152824(-)$1	208	63	86	21.8476
:eeeeettttttttttteeeee:	chr12:6646227-6646435(+)$1	208	139	162	21.8476
gggggwwwwwwwwwwwwwwgggg	chr11:62293842-62294134(-)$1	292	74	97	21.0622
fffffftttttttttttffffff	chr13:113540199-113540459(+)$1	260	2	25	21.3351
eeeeeuuuuuuuuuuuueeeeei	chr7:94295443-94295660(+)$1	217	22	45	24.0386
[eeeeettttttttttteeeeef	chr11:2153533-2153736(-)$1	203	49	72	23.5737
bb[bbuuuuuuuuuuuubbbb]d	chr2:241511776-241512079(+)$1	303	154	177	21.0737
cccwwwwwwwwwwwwwwccc]ee	chr16:46948813-46949084(+)$1	271	17	40	20.6350
d!!ccctttttttttttcccddd	chr22:42070795-42071068(-)$1	273	48	71	22.4891
eeeeeuuuuuuuuuuuueeeee3	chr22:35740470-35740807(+)$1	337	16	39	24.1349
gggggwwwwwwwwwwwwwwgggg	chr1:116930666-116930875(+)$1	209	168	191	21.0622
cccwwwwwwwwwwwwwwccc]cc	chr7:157611033-157611318(-)$1	285	3	26	20.5531
!!ddddtttttttttttdddd44	chr11:63882100-63882426(-)$1	326	110	133	22.2677
!ddddwwwwwwwwwwwwwwdddd	chr2:21234620-21234824(-)$1	204	125	148	20.5859
======ttttttttttt======	chr11:2151077-2151280(-)$1	203	12	35	22.8913
byyyyyyyyyyyyyyyybbgggg	chr9:97845755-97846039(+)$1	284	157	180	19.8011
!eeeeettttttttttteeeee2	chr2:61441239-61441564(-)$1	325	154	177	23.5824
:eeeeettttttttttteeeee:	chr11:2152605-2152809(-)$1	204	48	71	21.8476
eeeeettttttttttteeeee]f	chr2:21229756-21229969(-)$1	213	9	32	22.2943
""cccuuuuuuuuuuuuccc333	chr12:123994394-123994705(-)$1	311	173	196	23.3321
:eeeeettttttttttteeeee:	chr21:44083165-44083427(+)$1	262	79	102	21.8476
b[cccvvvvvvvvvvvvvccc]b	chr11:2150559-2150763(-)$1	204	12	35	22.0657
fffffwwwwwwwwwwwwwwffff	chrX:41045672-41045994(+)$1	322	150	173	19.9837
[cccwwwwwwwwwwwwwwccc]a	chr16:46948504-46948734(+)$1	230	87	110	21.0782
[bbccctttttttttttccc]bb	chr4:187541634-187541907(-)$1	273	92	115	21.8428
[eeeeettttttttttteeeeef	chr11:2153640-2153857(-)$1	217	170	193	23.5737
:eeeeettttttttttteeeee:	chr11:2152652-2152857(-)$1	205	96	119	21.8476
###bbvvvvvvvvvvvvvbb444	chrX:153628942-153629167(+)$1	225	87	110	21.0652
ff[ccctttttttttttcccfff	chr11:2154261-2154466(-)$1	205	156	179	22.4181
ddddyyyyyyyyyyyyyyyyddd	chr1:54502182-54502491(-)$1	309	111	134	20.0579
!ddddwwwwwwwwwwwwwwdddd	chr2:21234633-21234842(-)$1	209	143	166	20.5859
hhhhhhttttttttttthhhhhh	chr4:109543077-109543280(+)$1	203	81	104	20.3596
eeeeettttttttttteeeeeee	chr17:48459715-48459970(-)$1	255	138	161	22.3869
[eeeeettttttttttteeeee]	chr12:50157994-50158238(+)$1	244	8	31	23.7827
eeeeeuuuuuuuuuuuueeeee4	chr14:94908799-94909016(-)$1	217	41	64	24.0344
=====uuuuuuuuuuuu======	chr11:2152315-2152517(-)$1	202	84	107	23.5491
cccbbvvvvvvvvvvvvvbb]cc	chr20:34800109-34800387(+)$1	278	119	142	21.2963
d[cccyyyyyyyyyyyyyyyycc	chr12:9241739-9241944(-)$1	205	111	134	20.1141
ff[ccctttttttttttcccfff	chr11:2154215-2154422(-)$1	207	112	135	22.4181
eeeeeuuuuuuuuuuuueeeee:	chr11:2153274-2153477(-)$1	203	27	50	23.2416

#otherMatches

#Seq PSSM
GCCCCUUUCAUUUUUUCGGGGCA	chr9:136800210-136800489(-)$1	279	66	89	23.3574
UGGGCAAAGUCACCAUCGCCCAG	chr1:149858757-149858971(+)$1	214	59	82	22.2865
GGGGAUAUCUUGAUAAACUGGAG	chr18:43664369-43664618(-)$1	249	46	69	19.4349
augaucaccaucacuaucaucau	chr11:70835294-70835632(-)$1	338	260	283	20.6932
CAGCCUCUAACAAAACUAGGCUG	chr4:109543068-109543272(+)$1	204	90	113	20.3596
GUCACCCAAGCUCUGUUCAUGUU	chr12:65109678-65109997(-)$1	319	76	99	20.4049
UGAGGAAAGCAGACAUUGACCUC	chr6:33243518-33243724(+)$1	206	86	109	20.4934
UGUUUUUAAUUUCAGGUGAAACU	chr6:143816875-143817084(-)$1	209	85	108	23.6788
CAAAUUACUAUAACAAAGUCUCA	chr10:120828924-120829184(-)$1	260	94	117	20.4861
GGAGUCGAUCAACUCUAGGCUCC	chr8:99057153-99057369(-)$1	216	64	87	22.5730
ACAAUCUUCCUCUAUUUCAUUGU	chr3:149087519-149087767(-)$1	248	138	161	23.0838
CCCCUUCCAGUUCACCGUGGGGC	chr3:58139064-58139293(+)$1	229	206	229	21.5589
UCCUAACAGAAUUGGGCAUAGGA	chr6:33243740-33243943(+)$1	203	146	169	23.0838
GGAGGCCAAACGUCACCGUCCCC	chr11:2154225-2154431(-)$1	206	121	144	22.4181
AUGUCACCAUAUUUCACGACGUU	chr12:57593580-57593785(+)$1	205	45	68	23.5491
CCCCAGAAAUCACAGGUGGGCAC	chr11:2153437-2153641(-)$1	204	8	31	21.2230
GCUCUCCCUCACAGAAAAGAUCA	chr3:53260766-53260990(-)$1	224	82	105	23.3880
AUGCCUUCACCAGCUAUGGCAUU	chr18:34378311-34378640(-)$1	329	191	214	23.9331
CACCCGUAGGGUGGGCGGGGUGU	chr11:2152389-2152591(-)$1	202	158	181	23.5491
GCAUGAAAACCAAAAUCCAUGCA	chr11:2153377-2153579(-)$1	202	129	152	23.2416
UCCAUCUCCAAAGCCCUGGUGGC	chr19:39924061-39924263(-)$1	202	65	88	23.7827
CUGCAGGUUUCAUCAUAUUGCAG	chr9:139098514-139098786(-)$1	272	178	201	22.5730
UCUAUGAAAUUAACAACAAAUGG	chr2:21234624-21234833(-)$1	209	134	157	20.5859
GCAUGAAAACCAAAAUCCAUGCA	chr11:2153371-2153577(-)$1	206	127	150	23.2416
ACCCAUCUAUGUCACACGGGUGA	chr1:160268876-160269093(-)$1	217	69	92	22.1952
cUCAUGCGCAGCACAUACAUGAA	chr11:2152616-2152824(-)$1	208	63	86	21.8476
GCCUCAAGAUCAUCAGGUGAGGA	chr12:6646227-6646435(+)$1	208	139	162	21.8476
GCCCCGAAGUUGACAUCAAGGGG	chr11:62293842-62294134(-)$1	292	74	97	21.0622
GCAGCUUCACUUACACCAGCUGC	chr13:113540199-113540459(+)$1	260	2	25	21.3351
CCUCUUUUUAAAUCACUGGAGGA	chr7:94295443-94295660(+)$1	217	22	45	24.0386
UGAGUCAAAUUGGCCUGGACUUG	chr11:2153533-2153736(-)$1	203	49	72	23.5737
CGUGCUUCGACACACCUGCCGUG	chr2:241511776-241512079(+)$1	303	154	177	21.0737
cucuuuguuuuauuuuugagaca	chr16:46948813-46949084(+)$1	271	17	40	20.6350
UGUUCUGUCACCAUCAAAGAAGG	chr22:42070795-42071068(-)$1	273	48	71	22.4891
CGGGCAAGGACAAGGUAGCCCGU	chr22:35740470-35740807(+)$1	337	16	39	24.1349
UCAUGGAAUCCUUCAAAAACAUG	chr1:116930666-116930875(+)$1	209	168	191	21.0622
CCUCAUCACUCAGCCACAGGAGG	chr7:157611033-157611318(-)$1	285	3	26	20.5531
cccagauaaagcuucccucugcu	chr11:63882100-63882426(-)$1	326	110	133	22.2677
UCUAUGAAAUUAACAACAAAUGG	chr2:21234620-21234824(-)$1	204	125	148	20.5859
AGGUCCGAAGCUCUGUGGGACCU	chr11:2151077-2151280(-)$1	203	12	35	22.8913
cacacacaccacacacagcgcgu	chr9:97845755-97846039(+)$1	284	157	180	19.8011
CCAGUGGUAACCAAGAACAUUGC	chr2:61441239-61441564(-)$1	325	154	177	23.5824
cUCAUGCGCAGCACAUACAUGAA	chr11:2152605-2152809(-)$1	204	48	71	21.8476
GUCUCCAUUCACCAUAGAGAUGU	chr2:21229756-21229969(-)$1	213	9	32	22.2943
CUGCCCCACACAUGCCAGGCCUC	chr12:123994394-123994705(-)$1	311	173	196	23.3321
caugcacaucacacaccugcaua	chr21:44083165-44083427(+)$1	262	79	102	21.8476
CAGUGUUAUAUUCUGCCUCGCCG	chr11:2150559-2150763(-)$1	204	12	35	22.0657
CAUUCCUAAUCCAUCAUCCGAGU	chrX:41045672-41045994(+)$1	322	150	173	19.9837
auucugcaguuauuuuuugagca	chr16:46948504-46948734(+)$1	230	87	110	21.0782
UCACCUAAAGUUUACCCAGGAUG	chr4:187541634-187541907(-)$1	273	92	115	21.8428
UGAGUCAAAUUGGCCUGGACUUG	chr11:2153640-2153857(-)$1	217	170	193	23.5737
cUCAUGCGCAGCACAUACAUGAA	chr11:2152652-2152857(-)$1	205	96	119	21.8476
CAUUGCUCCUUAGAUCCACAUCU	chrX:153628942-153629167(+)$1	225	87	110	21.0652
GGAGGCCAAACGUCACCGUCCCC	chr11:2154261-2154466(-)$1	205	156	179	22.4181
GGAUUUUAACUACAACUCUUGUC	chr1:54502182-54502491(-)$1	309	111	134	20.0579
UCUAUGAAAUUAACAACAAAUGG	chr2:21234633-21234842(-)$1	209	143	166	20.5859
CAGCCUCUAACAAAACUAGGCUG	chr4:109543077-109543280(+)$1	203	81	104	20.3596
AGCCAcacaaaaucucuggcuau	chr17:48459715-48459970(-)$1	255	138	161	22.3869
CCCCAGAAGGGUCAAUGUUGGGA	chr12:50157994-50158238(+)$1	244	8	31	23.7827
CUGGGAAAAGUUGUCAACCCAGU	chr14:94908799-94909016(-)$1	217	41	64	24.0344
CACCCGUAGGGUGGGCGGGGUGU	chr11:2152315-2152517(-)$1	202	84	107	23.5491
GGCCAUUAGAAAGAAGAUUGAGC	chr20:34800109-34800387(+)$1	278	119	142	21.2963
GAAGGAAACAACAUUCAACUCCC	chr12:9241739-9241944(-)$1	205	111	134	20.1141
GGAGGCCAAACGUCACCGUCCCC	chr11:2154215-2154422(-)$1	207	112	135	22.4181
GCAUGAAAACCAAAAUCCAUGCA	chr11:2153274-2153477(-)$1	203	27	50	23.2416

#DB
(((((............))))))	chr9:136800210-136800489(-)$1	1	66	89	23.3574
(((((............))))..	chr1:149858757-149858971(+)$1	1	59	82	22.2865
(................))...)	chr18:43664369-43664618(-)$1	1	46	69	19.4349
(((((.............)))))	chr11:70835294-70835632(-)$1	1	260	283	20.6932
((((((...........))))))	chr4:109543068-109543272(+)$1	1	90	113	20.3596
(................))))))	chr12:65109678-65109997(-)$1	1	76	99	20.4049
.((((..............))))	chr6:33243518-33243724(+)$1	1	86	109	20.4934
.(((((...........))))))	chr6:143816875-143817084(-)$1	1	85	108	23.6788
(................))))))	chr10:120828924-120829184(-)$1	1	94	117	20.4861
((((((...........))))))	chr8:99057153-99057369(-)$1	1	64	87	22.5730
(((((.............)))))	chr3:149087519-149087767(-)$1	1	138	161	23.0838
((((..............)))))	chr3:58139064-58139293(+)$1	1	206	229	21.5589
(((((.............)))))	chr6:33243740-33243943(+)$1	1	146	169	23.0838
((.(((...........))))))	chr11:2154225-2154431(-)$1	1	121	144	22.4181
(((((............))))))	chr12:57593580-57593785(+)$1	1	45	68	23.5491
(((((...........))))...	chr11:2153437-2153641(-)$1	1	8	31	21.2230
(.(((............))).).	chr3:53260766-53260990(-)$1	1	82	105	23.3880
(((((............))))).	chr18:34378311-34378640(-)$1	1	191	214	23.9331
(((((............))))))	chr11:2152389-2152591(-)$1	1	158	181	23.5491
(((((............))))).	chr11:2153377-2153579(-)$1	1	129	152	23.2416
.(((((...........))))).	chr19:39924061-39924263(-)$1	1	65	88	23.7827
((((((...........))))))	chr9:139098514-139098786(-)$1	1	178	201	22.5730
.((((..............))))	chr2:21234624-21234833(-)$1	1	134	157	20.5859
(((((............))))).	chr11:2153371-2153577(-)$1	1	127	150	23.2416
((((.............))))))	chr1:160268876-160269093(-)$1	1	69	92	22.1952
.(((((...........))))).	chr11:2152616-2152824(-)$1	1	63	86	21.8476
.(((((...........))))).	chr12:6646227-6646435(+)$1	1	139	162	21.8476
(((((..............))))	chr11:62293842-62294134(-)$1	1	74	97	21.0622
((((((...........))))))	chr13:113540199-113540459(+)$1	1	2	25	21.3351
(((((............))))))	chr7:94295443-94295660(+)$1	1	22	45	24.0386
.(((((...........))))))	chr11:2153533-2153736(-)$1	1	49	72	23.5737
((.((............)))).)	chr2:241511776-241512079(+)$1	1	154	177	21.0737
(((..............))).))	chr16:46948813-46949084(+)$1	1	17	40	20.6350
(..(((...........))))))	chr22:42070795-42071068(-)$1	1	48	71	22.4891
(((((............))))).	chr22:35740470-35740807(+)$1	1	16	39	24.1349
(((((..............))))	chr1:116930666-116930875(+)$1	1	168	191	21.0622
(((..............))).))	chr7:157611033-157611318(-)$1	1	3	26	20.5531
..((((...........))))..	chr11:63882100-63882426(-)$1	1	110	133	22.2677
.((((..............))))	chr2:21234620-21234824(-)$1	1	125	148	20.5859
((((((...........))))))	chr11:2151077-2151280(-)$1	1	12	35	22.8913
(................))))))	chr9:97845755-97846039(+)$1	1	157	180	19.8011
.(((((...........))))).	chr2:61441239-61441564(-)$1	1	154	177	23.5824
.(((((...........))))).	chr11:2152605-2152809(-)$1	1	48	71	21.8476
(((((...........))))).)	chr2:21229756-21229969(-)$1	1	9	32	22.2943
..(((............)))...	chr12:123994394-123994705(-)$1	1	173	196	23.3321
.(((((...........))))).	chr21:44083165-44083427(+)$1	1	79	102	21.8476
(.(((.............))).)	chr11:2150559-2150763(-)$1	1	12	35	22.0657
(((((..............))))	chrX:41045672-41045994(+)$1	1	150	173	19.9837
.(((..............))).)	chr16:46948504-46948734(+)$1	1	87	110	21.0782
.(((((...........))).))	chr4:187541634-187541907(-)$1	1	92	115	21.8428
.(((((...........))))))	chr11:2153640-2153857(-)$1	1	170	193	23.5737
.(((((...........))))).	chr11:2152652-2152857(-)$1	1	96	119	21.8476
...((.............))...	chrX:153628942-153629167(+)$1	1	87	110	21.0652
((.(((...........))))))	chr11:2154261-2154466(-)$1	1	156	179	22.4181
((((................)))	chr1:54502182-54502491(-)$1	1	111	134	20.0579
.((((..............))))	chr2:21234633-21234842(-)$1	1	143	166	20.5859
((((((...........))))))	chr4:109543077-109543280(+)$1	1	81	104	20.3596
(((((...........)))))((	chr17:48459715-48459970(-)$1	1	138	161	22.3869
.(((((...........))))).	chr12:50157994-50158238(+)$1	1	8	31	23.7827
(((((............))))).	chr14:94908799-94909016(-)$1	1	41	64	24.0344
(((((............))))))	chr11:2152315-2152517(-)$1	1	84	107	23.5491
(((((.............)).))	chr20:34800109-34800387(+)$1	1	119	142	21.2963
(.(((................))	chr12:9241739-9241944(-)$1	1	111	134	20.1141
((.(((...........))))))	chr11:2154215-2154422(-)$1	1	112	135	22.4181
(((((............))))).	chr11:2153274-2153477(-)$1	1	27	50	23.2416

#PSSM
e : 0.18	[ : 0.10	f : 0.09	g : 0.09	c : 0.07	! : 0.07	: : 0.07	b : 0.06	= : 0.06	h : 0.04	d : 0.04	" : 0.03	i : 0.01	a : 0.01	# : 0.01	
e : 0.35	d : 0.10	g : 0.07	f : 0.07	y : 0.06	= : 0.06	c : 0.06	h : 0.04	[ : 0.04	b : 0.03	! : 0.03	i : 0.01	" : 0.01	# : 0.01	
e : 0.35	d : 0.12	c : 0.12	g : 0.07	y : 0.06	[ : 0.06	= : 0.06	h : 0.04	f : 0.03	i : 0.01	! : 0.01	b : 0.01	# : 0.01	
e : 0.35	c : 0.15	d : 0.12	g : 0.07	y : 0.06	= : 0.06	h : 0.04	b : 0.04	f : 0.03	w : 0.03	i : 0.01	
e : 0.33	c : 0.13	d : 0.10	y : 0.07	g : 0.06	w : 0.06	= : 0.06	h : 0.04	b : 0.04	f : 0.03	i : 0.01	v : 0.01	
u : 0.23	w : 0.16	e : 0.16	v : 0.10	y : 0.09	c : 0.07	t : 0.04	h : 0.03	g : 0.03	f : 0.01	d : 0.01	= : 0.01	
t : 0.40	u : 0.23	w : 0.16	v : 0.10	y : 0.09	
t : 0.40	u : 0.23	w : 0.16	v : 0.10	y : 0.09	
t : 0.40	u : 0.23	w : 0.16	v : 0.10	y : 0.09	
t : 0.40	u : 0.23	w : 0.16	v : 0.10	y : 0.09	
t : 0.40	u : 0.23	w : 0.16	v : 0.10	y : 0.09	
t : 0.40	u : 0.23	w : 0.16	v : 0.10	y : 0.09	
t : 0.40	u : 0.23	w : 0.16	v : 0.10	y : 0.09	
t : 0.40	u : 0.23	w : 0.16	v : 0.10	y : 0.09	
t : 0.40	u : 0.23	w : 0.16	v : 0.10	y : 0.09	
t : 0.40	u : 0.23	w : 0.16	v : 0.10	y : 0.09	
t : 0.35	u : 0.23	w : 0.16	v : 0.10	y : 0.09	e : 0.03	d : 0.01	
e : 0.30	c : 0.15	w : 0.13	v : 0.09	g : 0.06	= : 0.06	d : 0.04	b : 0.04	h : 0.03	y : 0.03	i : 0.01	f : 0.01	
e : 0.35	c : 0.18	w : 0.10	b : 0.07	g : 0.06	= : 0.06	d : 0.04	h : 0.04	y : 0.03	i : 0.01	f : 0.01	
e : 0.35	c : 0.18	d : 0.10	g : 0.10	= : 0.06	h : 0.04	b : 0.04	f : 0.03	y : 0.03	i : 0.01	3 : 0.01	
e : 0.35	d : 0.12	g : 0.12	f : 0.07	] : 0.07	= : 0.06	3 : 0.04	h : 0.04	c : 0.03	i : 0.01	b : 0.01	4 : 0.01	y : 0.01	
e : 0.35	g : 0.12	d : 0.09	f : 0.07	= : 0.06	] : 0.06	3 : 0.04	h : 0.04	c : 0.04	4 : 0.03	i : 0.01	2 : 0.01	a : 0.01	b : 0.01	
d : 0.12	g : 0.12	f : 0.12	: : 0.12	e : 0.07	c : 0.06	= : 0.06	2 : 0.04	h : 0.04	3 : 0.04	] : 0.04	4 : 0.04	i : 0.03	b : 0.03	a : 0.01	

#score	1432.9823714225054
#seq	65
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_transcript_m2_run1.txt

#BEAR
gggggqqqqqqqqgggg	chr1:183114454-183114741(+)$1	287	193	210	13.7464
h[cccqqqqqqqqccc]	chr2:20232561-20232810(-)$1	249	127	144	13.7922
[ddddqqqqqqqqdddd	chr14:70238524-70238772(+)$1	248	71	88	14.1901
fffffqqqqqqqqffff	chr1:153931546-153931792(-)$1	246	169	186	13.0769
"ddddqqqqqqqqdddd	chr4:155525212-155525531(-)$1	319	256	273	14.0859
eeeeeqqqqqqqqeeee	chr2:238674160-238674415(+)$1	255	58	75	14.2506
!!cccqqqqqqqqccc2	chr19:3052977-3053221(-)$1	244	35	52	13.8334
eeeeeqqqqqqqqeeee	chr3:145787441-145787673(-)$1	232	76	93	14.2506
e[cccqqqqqqqqccc2	chr17:56082535-56082789(-)$1	254	197	214	13.8383
gggggqqqqqqqqgggg	chr3:184052905-184053144(+)$1	239	61	78	13.7464
ddd[aqqqqqqqqaddd	chr11:62656138-62656412(+)$1	274	192	209	13.7268
iiiiiqqqqqqqqiiii	chr7:26230844-26231110(-)$1	266	185	202	13.6521
eeeeeqqqqqqqqeeee	chr10:7791230-7791505(+)$1	275	129	146	14.2506
=====qqqqqqqq====	chr14:73567992-73568240(+)$1	248	202	219	13.8624
dddddqqqqqqqqdddd	chr19:57323552-57323809(-)$1	257	198	215	13.9768
=[cccqqqqqqqqccc2	chr12:9262242-9262518(-)$1	276	170	187	13.8245
!ddddqqqqqqqqdddd	chr17:57918258-57918526(+)$1	268	22	39	14.1825
&ddddqqqqqqqqdddd	chr20:39752526-39752791(+)$1	265	174	191	13.4441
[ddddqqqqqqqqdddd	chr2:87004363-87004631(+)$1	268	244	261	14.1901
eeeeeqqqqqqqqeeee	chr11:65272290-65272527(+)$1	237	86	103	14.2506
eeeeeqqqqqqqqeeee	chr20:46284436-46284692(+)$1	256	60	77	14.2506
gddddqqqqqqqqdddd	chr1:54497467-54497684(-)$1	217	140	157	14.1110
gggggqqqqqqqqgggg	chr5:179156568-179156810(+)$1	242	157	174	13.7464
!ddddqqqqqqqqdddd	chr2:230672235-230672514(-)$1	279	55	72	14.1825
fffffqqqqqqqqffff	chr9:108151984-108152255(+)$1	271	182	199	13.0769
eeeeeqqqqqqqqeeee	chr3:57557348-57557626(-)$1	278	75	92	14.2506
:ddddqqqqqqqqdddd	chr11:64532541-64532792(-)$1	251	67	84	13.1938
ee[bbqqqqqqqqbbee	chr2:21224208-21224456(-)$1	248	173	190	12.7358
fffffqqqqqqqqffff	chr6:159046706-159046981(+)$1	275	23	40	13.0769
eee[aqqqqqqqqaeee	chr16:84214610-84214864(-)$1	254	55	72	14.0298
eeeeeqqqqqqqqeeee	chr1:153931790-153932005(-)$1	215	166	183	14.2506
fffffqqqqqqqqffff	chr11:130013516-130013762(+)$1	246	83	100	13.0769
:ddddqqqqqqqqdddd	chr3:186335070-186335353(+)$1	283	205	222	13.1938
eeeeeqqqqqqqqeeee	chr19:57323830-57324097(-)$1	267	114	131	14.2506
[ddddqqqqqqqqdddd	chr12:9267628-9267853(-)$1	225	6	23	14.1901
gggggqqqqqqqqgggg	chr12:22840821-22841070(+)$1	249	141	158	13.7464
fffffqqqqqqqqffff	chr17:6588085-6588340(-)$1	255	153	170	13.0769
c[cccqqqqqqqqccc]	chr10:73577000-73577252(-)$1	252	91	108	13.9883
:ddddqqqqqqqqdddd	chr9:33111089-33111353(-)$1	264	152	169	13.1938
fffffqqqqqqqqffff	chr14:81940421-81940689(-)$1	268	8	25	13.0769
gggggqqqqqqqqgggg	chr5:95232554-95232835(-)$1	281	86	103	13.7464
c[cccqqqqqqqqccc2	chr10:102123711-102123950(+)$1	239	39	56	13.7548
a[cccqqqqqqqqccc]	chr10:102122163-102122379(+)$1	216	115	132	13.9730
%ddddqqqqqqqqdddd	chr17:53470350-53470603(-)$1	253	198	215	13.4564
eeeeeqqqqqqqqeeee	chr5:55232506-55232801(-)$1	295	235	252	14.2506
d[cccqqqqqqqqcccd	chr9:124094913-124095187(+)$1	274	169	186	13.9235
fffffqqqqqqqqffff	chr6:145172240-145172498(+)$1	258	50	67	13.0769
""cccqqqqqqqqccc3	chr17:28794916-28795198(+)$1	282	72	89	13.7730
fffffqqqqqqqqffff	chr5:179155840-179156088(+)$1	248	195	212	13.0769
eeeeeqqqqqqqqeeee	chr1:234742490-234742708(-)$1	218	17	34	14.2506
=====qqqqqqqq====	chr7:128409755-128410030(+)$1	275	7	24	13.8624
:ddddqqqqqqqqdddd	chr5:179157252-179157506(+)$1	254	172	189	13.1938
Eddddqqqqqqqqdddd	chrX:128580752-128581004(-)$1	252	64	81	13.1577
d[cccqqqqqqqqccc]	chr11:70281280-70281521(+)$1	241	32	49	13.9053
iiiiiqqqqqqqqiiii	chr19:972516-972787(+)$1	271	183	200	13.6521
eee[aqqqqqqqqaeee	chr20:43955066-43955321(-)$1	255	151	168	14.0298
fffffqqqqqqqqffff	chr6:119500702-119500942(-)$1	240	93	110	13.0769
bbcccqqqqqqqqccce	chr2:61412725-61413007(+)$1	282	23	40	13.3820
iiiiiqqqqqqqqiiii	chr3:113440246-113440502(-)$1	256	161	178	13.6521
eeeeeqqqqqqqqeeee	chr2:21224459-21224672(-)$1	213	18	35	14.2506
[ddddqqqqqqqqdddd	chr2:118866094-118866348(+)$1	254	23	40	14.1901
eddddqqqqqqqqdddd	chr6:47976145-47976433(-)$1	288	61	78	14.1433
eeeeeqqqqqqqqeeee	chr19:57324217-57324471(-)$1	254	29	46	14.2506
eeeeeqqqqqqqqeeee	chr6:32948860-32949097(+)$1	237	206	223	14.2506
eeeeaqqqqqqqqa]ee	chr12:46753621-46753873(-)$1	252	87	104	13.9327
c[cccqqqqqqqqccc]	chr1:70689726-70689979(+)$1	253	131	148	13.9883
[ddddqqqqqqqqdddd	chr12:46758258-46758493(-)$1	235	197	214	14.1901
eeeeeqqqqqqqqeeee	chr16:50632931-50633171(+)$1	240	137	154	14.2506
eee[aqqqqqqqqa]ee	chr10:105360597-105360843(-)$1	246	79	96	13.8738
iicccqqqqqqqqccc]	chr9:95013903-95014209(-)$1	306	214	231	13.9493
=====qqqqqqqq====	chr9:95018776-95019058(-)$1	282	161	178	13.8624
eeeeeqqqqqqqqeeee	chr3:13358780-13359071(-)$1	291	234	251	14.2506
!!cccqqqqqqqqcccc	chr1:1326515-1326779(-)$1	264	105	122	13.9661
gggggqqqqqqqqgggg	chr1:224577078-224577342(-)$1	264	109	126	13.7464
Cddddqqqqqqqqdddd	chr20:34312324-34312575(-)$1	251	56	73	12.9743
Cddddqqqqqqqqdddd	chr11:102268552-102268805(-)$1	253	28	45	12.9743

#otherMatches

#Seq PSSM
AAUGCAACACUUGGCAU	chr1:183114454-183114741(+)$1	287	193	210	13.7464
GUACUUGCCACAUAGUU	chr2:20232561-20232810(-)$1	249	127	144	13.7922
UGCUUGUACAUAAAGGC	chr14:70238524-70238772(+)$1	248	71	88	14.1901
UUGGGACCUGUUACCCA	chr1:153931546-153931792(-)$1	246	169	186	13.0769
CUUUAUUGACCAUUAAA	chr4:155525212-155525531(-)$1	319	256	273	14.0859
AAGAGCUGAAUCACUUU	chr2:238674160-238674415(+)$1	255	58	75	14.2506
CCCUUCCCAAAUAAAGA	chr19:3052977-3053221(-)$1	244	35	52	13.8334
CUUGAAUUUUAUAUCAG	chr3:145787441-145787673(-)$1	232	76	93	14.2506
AAAUUGUAUUUUAAGUG	chr17:56082535-56082789(-)$1	254	197	214	13.8383
GGGCACCAACGCCUGCC	chr3:184052905-184053144(+)$1	239	61	78	13.7464
AAGUCUUCCCUCUGCUU	chr11:62656138-62656412(+)$1	274	192	209	13.7268
GUUUAACAAUUUAUAAA	chr7:26230844-26231110(-)$1	266	185	202	13.6521
UAUUCUUCGGUUUGAAU	chr10:7791230-7791505(+)$1	275	129	146	14.2506
uauaccuguauuuguau	chr14:73567992-73568240(+)$1	248	202	219	13.8624
UGUCCUAUUCUGUGGAC	chr19:57323552-57323809(-)$1	257	198	215	13.9768
GAGUAGAAUUAAUUACA	chr12:9262242-9262518(-)$1	276	170	187	13.8245
UCUAGCAUGUACUCUGG	chr17:57918258-57918526(+)$1	268	22	39	14.1825
CAGUGACUGAAACCAUU	chr20:39752526-39752791(+)$1	265	174	191	13.4441
UUUGCUCAUGACUGCAG	chr2:87004363-87004631(+)$1	268	244	261	14.1901
ACAUUCCAUUUUAAAUG	chr11:65272290-65272527(+)$1	237	86	103	14.2506
uuuaaaaaaauuauuaa	chr20:46284436-46284692(+)$1	256	60	77	14.2506
UGAGCUGAUCAUUGCUC	chr1:54497467-54497684(-)$1	217	140	157	14.1110
AAGUACAGAAAAAUACU	chr5:179156568-179156810(+)$1	242	157	174	13.7464
CAUCCAUAUAACAGGAU	chr2:230672235-230672514(-)$1	279	55	72	14.1825
CUGUGUAUUGAUUUGCA	chr9:108151984-108152255(+)$1	271	182	199	13.0769
AAAUGUAGCAUUCCAUU	chr3:57557348-57557626(-)$1	278	75	92	14.2506
UUCUGCUGCAAUUUAGA	chr11:64532541-64532792(-)$1	251	67	84	13.1938
UUUGUAUUGAAAGACAG	chr2:21224208-21224456(-)$1	248	173	190	12.7358
UUCAGAUCUCAGGUUGA	chr6:159046706-159046981(+)$1	275	23	40	13.0769
CUGUGUUUAUCUUCCAG	chr16:84214610-84214864(-)$1	254	55	72	14.0298
GCAGCCAUCUACUGCUG	chr1:153931790-153932005(-)$1	215	166	183	14.2506
AGUUUUCUUUUUUAAAU	chr11:130013516-130013762(+)$1	246	83	100	13.0769
AGGGAAGAAAGCAUCCU	chr3:186335070-186335353(+)$1	283	205	222	13.1938
CGCUUCCUGCCUUAAGU	chr19:57323830-57324097(-)$1	267	114	131	14.2506
augaauucuuuguuuca	chr12:9267628-9267853(-)$1	225	6	23	14.1901
CAGUGAAUUUAUACACU	chr12:22840821-22841070(+)$1	249	141	158	13.7464
CUGGAUGGCAUUUUCCA	chr17:6588085-6588340(-)$1	255	153	170	13.0769
UUGGUUUUUUUCUACUU	chr10:73577000-73577252(-)$1	252	91	108	13.9883
AGGGAAAUACUGCUCCC	chr9:33111089-33111353(-)$1	264	152	169	13.1938
UGGUUUGUUGGUUAGCC	chr14:81940421-81940689(-)$1	268	8	25	13.0769
AAGGUAGGUGUAAGCUU	chr5:95232554-95232835(-)$1	281	86	103	13.7464
CAGUAUCACGAUUUGCA	chr10:102123711-102123950(+)$1	239	39	56	13.7548
CUUUCUCUUCCCUGAAC	chr10:102122163-102122379(+)$1	216	115	132	13.9730
UUUAGAUCGGGUGCUGA	chr17:53470350-53470603(-)$1	253	198	215	13.4564
GACAUAACUCCAAAUGU	chr5:55232506-55232801(-)$1	295	235	252	14.2506
UUGGGAAAUUAAAUCCA	chr9:124094913-124095187(+)$1	274	169	186	13.9235
AUCCAAAGAGAAAUGGA	chr6:145172240-145172498(+)$1	258	50	67	13.0769
UUGAUGUUCAGUGAUUU	chr17:28794916-28795198(+)$1	282	72	89	13.7730
GAGAUGAGUUGCAGUUU	chr5:179155840-179156088(+)$1	248	195	212	13.0769
AAAGACAUUUUUUUCUU	chr1:234742490-234742708(-)$1	218	17	34	14.2506
UUGCUAUAGGUCCAGCA	chr7:128409755-128410030(+)$1	275	7	24	13.8624
UACAAAUAAACAGUUGU	chr5:179157252-179157506(+)$1	254	172	189	13.1938
UGUACUGUAUUUUGUGC	chrX:128580752-128581004(-)$1	252	64	81	13.1577
ACAGAUCAGGCCUUCUU	chr11:70281280-70281521(+)$1	241	32	49	13.9053
UGGGGGGAUCAAACCUU	chr19:972516-972787(+)$1	271	183	200	13.6521
AGGUGUCUUCAUUCUCU	chr20:43955066-43955321(-)$1	255	151	168	14.0298
UUAUGUUUAUUAUCAUA	chr6:119500702-119500942(-)$1	240	93	110	13.0769
AGGAGGUAAGUAACUCC	chr2:61412725-61413007(+)$1	282	23	40	13.3820
AGAUGGUCCUAAACAUU	chr3:113440246-113440502(-)$1	256	161	178	13.6521
UCAUGAACCCCUACAUG	chr2:21224459-21224672(-)$1	213	18	35	14.2506
ACUUAAAUAACUGUAAG	chr2:118866094-118866348(+)$1	254	23	40	14.1901
UGGGUAACUAUCCAUCC	chr6:47976145-47976433(-)$1	288	61	78	14.1433
AUAGUCUUGUGAAGCUG	chr19:57324217-57324471(-)$1	254	29	46	14.2506
AAUAAAGAAAAUAUUAU	chr6:32948860-32949097(+)$1	237	206	223	14.2506
AUGGCUUAGUUGUGUUC	chr12:46753621-46753873(-)$1	252	87	104	13.9327
auguuauauaagagacu	chr1:70689726-70689979(+)$1	253	131	148	13.9883
CUUUGAUAAUUAACGAA	chr12:46758258-46758493(-)$1	235	197	214	14.1901
CCCUGACAAAAACCAGG	chr16:50632931-50633171(+)$1	240	137	154	14.2506
UUUGCAUGUUUCGGGAG	chr10:105360597-105360843(-)$1	246	79	96	13.8738
UUAUUCUGCCAAAAAUA	chr9:95013903-95014209(-)$1	306	214	231	13.9493
UAUUUAAUAGUGGAAAU	chr9:95018776-95019058(-)$1	282	161	178	13.8624
GAGCAGUUAGAAGUGCU	chr3:13358780-13359071(-)$1	291	234	251	14.2506
UUGCAUGUUUCUCUGCA	chr1:1326515-1326779(-)$1	264	105	122	13.9661
CUGUCUUUUGUCUGGCA	chr1:224577078-224577342(-)$1	264	109	126	13.7464
CGUGCCAAUCAUAGUAC	chr20:34312324-34312575(-)$1	251	56	73	12.9743
UGUGAGAAUAUUGUCAC	chr11:102268552-102268805(-)$1	253	28	45	12.9743

#DB
(((((........))))	chr1:183114454-183114741(+)$1	1	193	210	13.7464
(.(((........))).	chr2:20232561-20232810(-)$1	1	127	144	13.7922
.((((........))))	chr14:70238524-70238772(+)$1	1	71	88	14.1901
(((((........))))	chr1:153931546-153931792(-)$1	1	169	186	13.0769
.((((........))))	chr4:155525212-155525531(-)$1	1	256	273	14.0859
(((((........))))	chr2:238674160-238674415(+)$1	1	58	75	14.2506
..(((........))).	chr19:3052977-3053221(-)$1	1	35	52	13.8334
(((((........))))	chr3:145787441-145787673(-)$1	1	76	93	14.2506
(.(((........))).	chr17:56082535-56082789(-)$1	1	197	214	13.8383
(((((........))))	chr3:184052905-184053144(+)$1	1	61	78	13.7464
(((.(........))))	chr11:62656138-62656412(+)$1	1	192	209	13.7268
(((((........))))	chr7:26230844-26231110(-)$1	1	185	202	13.6521
(((((........))))	chr10:7791230-7791505(+)$1	1	129	146	14.2506
(((((........))))	chr14:73567992-73568240(+)$1	1	202	219	13.8624
)((((........))))	chr19:57323552-57323809(-)$1	1	198	215	13.9768
(.(((........))).	chr12:9262242-9262518(-)$1	1	170	187	13.8245
.((((........))))	chr17:57918258-57918526(+)$1	1	22	39	14.1825
.((((........))))	chr20:39752526-39752791(+)$1	1	174	191	13.4441
.((((........))))	chr2:87004363-87004631(+)$1	1	244	261	14.1901
(((((........))))	chr11:65272290-65272527(+)$1	1	86	103	14.2506
(((((........))))	chr20:46284436-46284692(+)$1	1	60	77	14.2506
)((((........))))	chr1:54497467-54497684(-)$1	1	140	157	14.1110
(((((........))))	chr5:179156568-179156810(+)$1	1	157	174	13.7464
.((((........))))	chr2:230672235-230672514(-)$1	1	55	72	14.1825
(((((........))))	chr9:108151984-108152255(+)$1	1	182	199	13.0769
(((((........))))	chr3:57557348-57557626(-)$1	1	75	92	14.2506
.((((........))))	chr11:64532541-64532792(-)$1	1	67	84	13.1938
((.((........))))	chr2:21224208-21224456(-)$1	1	173	190	12.7358
(((((........))))	chr6:159046706-159046981(+)$1	1	23	40	13.0769
(((.(........))))	chr16:84214610-84214864(-)$1	1	55	72	14.0298
(((((........))))	chr1:153931790-153932005(-)$1	1	166	183	14.2506
(((((........))))	chr11:130013516-130013762(+)$1	1	83	100	13.0769
.((((........))))	chr3:186335070-186335353(+)$1	1	205	222	13.1938
(((((........))))	chr19:57323830-57324097(-)$1	1	114	131	14.2506
.((((........))))	chr12:9267628-9267853(-)$1	1	6	23	14.1901
(((((........))))	chr12:22840821-22841070(+)$1	1	141	158	13.7464
(((((........))))	chr17:6588085-6588340(-)$1	1	153	170	13.0769
(.(((........))).	chr10:73577000-73577252(-)$1	1	91	108	13.9883
.((((........))))	chr9:33111089-33111353(-)$1	1	152	169	13.1938
(((((........))))	chr14:81940421-81940689(-)$1	1	8	25	13.0769
(((((........))))	chr5:95232554-95232835(-)$1	1	86	103	13.7464
(.(((........))).	chr10:102123711-102123950(+)$1	1	39	56	13.7548
(.(((........))).	chr10:102122163-102122379(+)$1	1	115	132	13.9730
.((((........))))	chr17:53470350-53470603(-)$1	1	198	215	13.4564
(((((........))))	chr5:55232506-55232801(-)$1	1	235	252	14.2506
(.(((........))))	chr9:124094913-124095187(+)$1	1	169	186	13.9235
(((((........))))	chr6:145172240-145172498(+)$1	1	50	67	13.0769
..(((........))).	chr17:28794916-28795198(+)$1	1	72	89	13.7730
(((((........))))	chr5:179155840-179156088(+)$1	1	195	212	13.0769
(((((........))))	chr1:234742490-234742708(-)$1	1	17	34	14.2506
(((((........))))	chr7:128409755-128410030(+)$1	1	7	24	13.8624
.((((........))))	chr5:179157252-179157506(+)$1	1	172	189	13.1938
(((((........))))	chrX:128580752-128581004(-)$1	1	64	81	13.1577
(.(((........))).	chr11:70281280-70281521(+)$1	1	32	49	13.9053
(((((........))))	chr19:972516-972787(+)$1	1	183	200	13.6521
(((.(........))))	chr20:43955066-43955321(-)$1	1	151	168	14.0298
(((((........))))	chr6:119500702-119500942(-)$1	1	93	110	13.0769
))(((........)))(	chr2:61412725-61413007(+)$1	1	23	40	13.3820
(((((........))))	chr3:113440246-113440502(-)$1	1	161	178	13.6521
(((((........))))	chr2:21224459-21224672(-)$1	1	18	35	14.2506
.((((........))))	chr2:118866094-118866348(+)$1	1	23	40	14.1901
(((((........))))	chr6:47976145-47976433(-)$1	1	61	78	14.1433
(((((........))))	chr19:57324217-57324471(-)$1	1	29	46	14.2506
(((((........))))	chr6:32948860-32949097(+)$1	1	206	223	14.2506
(((((........).))	chr12:46753621-46753873(-)$1	1	87	104	13.9327
(.(((........))).	chr1:70689726-70689979(+)$1	1	131	148	13.9883
.((((........))))	chr12:46758258-46758493(-)$1	1	197	214	14.1901
(((((........))))	chr16:50632931-50633171(+)$1	1	137	154	14.2506
(((.(........).))	chr10:105360597-105360843(-)$1	1	79	96	13.8738
(((((........))).	chr9:95013903-95014209(-)$1	1	214	231	13.9493
(((((........))))	chr9:95018776-95019058(-)$1	1	161	178	13.8624
(((((........))))	chr3:13358780-13359071(-)$1	1	234	251	14.2506
..(((........))))	chr1:1326515-1326779(-)$1	1	105	122	13.9661
(((((........))))	chr1:224577078-224577342(-)$1	1	109	126	13.7464
(((((........))))	chr20:34312324-34312575(-)$1	1	56	73	12.9743
(((((........))))	chr11:102268552-102268805(-)$1	1	28	45	12.9743

#PSSM
e : 0.28	f : 0.11	g : 0.09	[ : 0.06	! : 0.05	d : 0.05	i : 0.05	= : 0.05	: : 0.05	c : 0.03	" : 0.02	C : 0.02	h : 0.01	& : 0.01	a : 0.01	% : 0.01	E : 0.01	b : 0.01	
d : 0.27	e : 0.26	[ : 0.11	f : 0.11	g : 0.07	i : 0.05	= : 0.03	! : 0.02	" : 0.01	b : 0.01	
d : 0.27	e : 0.24	c : 0.18	f : 0.11	g : 0.07	i : 0.03	= : 0.03	[ : 0.01	
d : 0.26	e : 0.21	c : 0.18	f : 0.11	g : 0.07	[ : 0.05	i : 0.03	= : 0.03	b : 0.01	
d : 0.26	e : 0.19	c : 0.18	f : 0.11	g : 0.07	a : 0.06	i : 0.03	= : 0.03	b : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.26	e : 0.19	c : 0.18	f : 0.11	g : 0.07	a : 0.06	i : 0.03	= : 0.03	b : 0.01	
d : 0.27	e : 0.22	c : 0.18	f : 0.11	g : 0.07	i : 0.03	= : 0.03	] : 0.02	b : 0.01	
d : 0.27	e : 0.26	c : 0.18	f : 0.11	g : 0.07	i : 0.03	= : 0.03	
d : 0.28	e : 0.27	f : 0.11	g : 0.07	] : 0.07	2 : 0.05	i : 0.03	= : 0.03	3 : 0.01	c : 0.01	

#score	1047.1115990149474
#seq	76
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_UTR_m3_run1.txt

#BEAR
ee[eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr1:154437564-154437916(+)$1	352	195	227	34.8891
========^^^^^^^^^^^^^^^^^^^^====	chr17:41064601-41064881(+)$1	280	31	63	35.4806
!!ffffff^^^^^^^^^^^^^^^^^^^^ffff	chr8:71023301-71023599(-)$1	298	174	206	34.6836
[ggggggg^^^^^^^^^^^^^^^^^^^^gggg	chr9:34635415-34635734(-)$1	319	190	222	35.1554
gg^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr11:18429074-18429349(+)$1	275	95	127	37.5474
ffccc^^^^^^^^^^^^^^^^^^^^^^^ccc]	chr4:39452078-39452325(+)$1	247	156	188	36.4601
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr7:128410476-128410740(+)$1	264	140	172	37.8204
^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr6:52367624-52367876(-)$1	252	54	86	38.1678
cc!!dddd^^^^^^^^^^^^^^^^^^dddd]c	chr7:104746934-104747183(+)$1	249	150	182	32.7958
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr10:82278693-82278947(+)$1	254	16	48	37.8204
d"""bb^^^^^^^^^^^^^^^^^^^^^^bb]d	chr8:17502874-17503139(-)$1	265	205	237	36.1295
ccc:dddd^^^^^^^^^^^^^^^^^^^^dddd	chr11:61734788-61735067(-)$1	279	62	94	34.6184
^^^^^^^^^^^^^^^^^^^^^^^^^^^^====	chr16:23582421-23582701(+)$1	280	25	57	38.2376
^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr16:69737323-69737581(+)$1	258	87	119	38.2736
###eeeee^^^^^^^^^^^^^^^^^^^^^^ee	chr2:96851150-96851414(-)$1	264	211	243	36.3365
D::dddd^^^^^^^^^^^^^^^^^^^^^dddd	chr20:30253493-30253732(-)$1	239	189	221	33.6310
cc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]	chr17:37008817-37009031(-)$1	214	12	44	37.8344
%%%%dddd^^^^^^^^^^^^^^^^^^^^dddd	chr2:27263939-27264188(+)$1	249	141	173	34.7952
[ggggggg^^^^^^^^^^^^^^^^^^^^^^gg	chr18:74074005-74074260(-)$1	255	151	183	35.3940
$$$eeeee^^^^^^^^^^^^^^^^^^^^eeee	chr1:169100767-169101022(+)$1	255	68	100	35.7667
[ccc[ccc^^^^^^^^^^^^^^^^^^^^ccc]	chr18:56067571-56067821(+)$1	250	55	87	35.6850
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhh	chr20:36033326-36033584(+)$1	258	12	44	37.3597
gg!!dddd^^^^^^^^^^^^^^^^^^^^^ddd	chr14:81940958-81941205(-)$1	247	186	218	35.9616
hhhhhhha^^^^^^^^^^^^^^^^^^^^^a]h	chr2:208628373-208628664(-)$1	291	167	199	33.0180
:::eeeee^^^^^^^^^^^^^^^^^^^eeeee	chr1:56961501-56961765(-)$1	264	102	134	31.8809
$$$$dddd^^^^^^^^^^^^^^^^^^^^dddd	chr12:1897159-1897465(+)$1	306	205	237	36.0007
^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr8:101721588-101721796(-)$1	208	41	73	38.2736
ee"""ccc^^^^^^^^^^^^^^^^^^^ccc44	chr1:8072482-8072738(-)$1	256	162	194	34.4899
dd^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr8:121550611-121550869(-)$1	258	153	185	37.4151
gggggg[a^^^^^^^^^^^^^^^^^^^^^^a]	chr13:96446497-96446763(+)$1	266	79	111	35.5415
^^^^^^^^^^^^^^^^^^^^^^^^^^^^cccf	chr12:57118191-57118409(-)$1	218	78	110	38.2172
ccc[eeeee^^^^^^^^^^^^^^^^^^eeeee	chr20:30754555-30754858(+)$1	303	126	158	32.6703
ee^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr1:43392247-43392502(-)$1	255	23	55	37.3814
''''eeeee^^^^^^^^^^^^^^^^^^eeeee	chr5:179157705-179157963(+)$1	258	145	177	31.9212
d[ccc^^^^^^^^^^^^^^^^^^^^^^^cccd	chr16:4014731-4014978(-)$1	247	66	98	36.7385
^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr2:54895925-54896148(+)$1	223	156	188	38.2275
^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr1:236139951-236140255(-)$1	304	103	135	38.1678
d!!eeeee^^^^^^^^^^^^^^^^^^^^^^ee	chr5:172378193-172378441(+)$1	248	193	225	35.9046
c"""bb^^^^^^^^^^^^^^^^^^^^^^^^bb	chr14:21820239-21820523(-)$1	284	120	152	36.3387
ffff[ccc^^^^^^^^^^^^^^^^^^ccc]ff	chr17:29700937-29701236(+)$1	299	203	235	31.9201
c[ffffff^^^^^^^^^^^^^^^^^^^^^^^^	chr17:56423300-56423551(-)$1	251	68	100	34.5431
$ggggggg^^^^^^^^^^^^^^^^^^^^^^^^	chr2:55199440-55199712(-)$1	272	124	156	35.0046
[a!!dddd^^^^^^^^^^^^^^^^^^^dddd3	chr12:56991333-56991549(-)$1	216	83	115	34.7618
ff!!dddd^^^^^^^^^^^^^^^^^^dddd44	chr1:43392126-43392332(-)$1	206	159	191	32.4157
!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^cc	chr3:30734576-30734829(+)$1	253	71	103	37.3245
JJJdddd^^^^^^^^^^^^^^^^^^^^^dddd	chr18:56996372-56996627(-)$1	255	23	55	31.8151
oobbdddd^^^^^^^^^^^^^^^^^^^^^^dd	chr5:172743152-172743385(-)$1	233	135	167	34.8182
hh^^^^^^^^^^^^^^^^^^^^^^^^^^hhhh	chr20:33148634-33148884(-)$1	250	62	94	36.0787
fffff[bb^^^^^^^^^^^^^^^^^^^^^bb]	chrX:118920376-118920653(-)$1	277	203	235	33.8707
:::eeeee^^^^^^^^^^^^^^^^^^^^eeee	chr1:169101523-169101738(+)$1	215	176	208	33.2377
ffffff!!bb^^^^^^^^^^^^^^^^^^bb22	chr5:149781440-149781672(-)$1	232	102	134	30.7542
"""dddd^^^^^^^^^^^^^^^^^^^^^dddd	chr20:30253360-30253614(-)$1	254	71	103	36.6620
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr16:85706417-85706707(+)$1	290	242	274	37.8204
"bb"""ccc^^^^^^^^^^^^^^^^^^^ccc]	chr16:8951865-8952227(-)$1	362	259	291	34.4438
d^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr12:57118153-57118391(-)$1	238	180	212	37.8894
####ccc^^^^^^^^^^^^^^^^^^^^^^^cc	chr2:159481531-159481793(+)$1	262	150	182	37.3139
ggggggg^^^^^^^^^^^^^^^^^^^^^^ggg	chr8:126449293-126449574(+)$1	281	216	248	35.7897
c"""dddd^^^^^^^^^^^^^^^^^^^^dddd	chr11:61734879-61735085(-)$1	206	80	112	36.2756
DD::dddd^^^^^^^^^^^^^^^^^^^^dddd	chr2:21224297-21224559(-)$1	262	24	56	32.1283
####eeeee^^^^^^^^^^^^^^^^^^eeeee	chr14:89628294-89628561(-)$1	267	191	223	33.6651
ffffff!!a^^^^^^^^^^^^^^^^^^a22ff	chr8:17427186-17427426(+)$1	240	77	109	32.4762
:::dddd^^^^^^^^^^^^^^^^^^^^^dddd	chr15:77345018-77345263(-)$1	245	212	244	33.7827
hhhhhhhh^^^^^^^^^^^^^^^^^^^^hhhh	chr2:98373294-98373578(-)$1	284	178	210	31.5487
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr16:4013980-4014261(-)$1	281	115	147	37.8204
!!ggggggg^^^^^^^^^^^^^^^^^^ggggg	chr20:2945539-2945832(+)$1	293	24	56	32.5813
^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr20:48698556-48698846(-)$1	290	245	277	38.2275
(ggggggg^^^^^^^^^^^^^^^^^^^^^^^g	chrX:131513428-131513711(-)$1	283	215	247	34.9238

#otherMatches

#Seq PSSM
GGGGUCUGACAAUACCUCGAGCCACAACCGAC	chr1:154437564-154437916(+)$1	352	195	227	34.8891
AGGAAAAGUCAACAUCUUCUCucuuuuuuuuu	chr17:41064601-41064881(+)$1	280	31	63	35.4806
CUUCAUGAUACUGGUAAUUUAUAAUAAUUCGU	chr8:71023301-71023599(-)$1	298	174	206	34.6836
ACAGGGACAUACACCAUGCAGAUCCUGAGUUC	chr9:34635415-34635734(-)$1	319	190	222	35.1554
UGAACAUGCCUAGUCCAACAUUUUUUCCCAGU	chr11:18429074-18429349(+)$1	275	95	127	37.5474
CAAGGAAUUUUUUUAGUAUUAACAUCUCCCUC	chr4:39452078-39452325(+)$1	247	156	188	36.4601
CUCUCCCCGCUGCCAAAAAAAAAAAAAAAGGA	chr7:128410476-128410740(+)$1	264	140	172	37.8204
CUUAUUCUUCCACAAACCAUUCUCAAUAAAGC	chr6:52367624-52367876(-)$1	252	54	86	38.1678
CCUAUGGACCCAUCUUUUGCCACGCCUCCACG	chr7:104746934-104747183(+)$1	249	150	182	32.7958
CCACAUACAAGCACUCCCCCACUCCCCAGCGU	chr10:82278693-82278947(+)$1	254	16	48	37.8204
GAUAUGUACUAAUCAAAUAAUAAUCAAUCAAU	chr8:17502874-17503139(-)$1	265	205	237	36.1295
GCCCUCCGUCACCUCUUCACCGCACCCUCGGA	chr11:61734788-61735067(-)$1	279	62	94	34.6184
UUUCCCUUUUUCAUUCUCUCGCUUCCUCAAUU	chr16:23582421-23582701(+)$1	280	25	57	38.2376
CCUCCAUAAUUGUUCUAAUCUUCUUCCCACUG	chr16:69737323-69737581(+)$1	258	87	119	38.2736
AAUAGGGAUCAAGUUUUAAAUCCUCCUCCUUC	chr2:96851150-96851414(-)$1	264	211	243	36.3365
CCUCAGAAUUCACAAAAUUUCCACAAAAUCUG	chr20:30253493-30253732(-)$1	239	189	221	33.6310
AACAUUUUUUAUUUUUAUUUACAUUCUUUUGU	chr17:37008817-37009031(-)$1	214	12	44	37.8344
UUCUUCUGACAAAUGAUUCCUGCUUCUCCAGA	chr2:27263939-27264188(+)$1	249	141	173	34.7952
AGACAAGUUUGAGACACUGGAAAAAAAGAUAC	chr18:74074005-74074260(-)$1	255	151	183	35.3940
AAAAAGAUACAAAAACAAAAACCUACUAGUCU	chr1:169100767-169101022(+)$1	255	68	100	35.7667
CACUUUUUUAAUUUAUAUAAGCCUUAAUGAAC	chr18:56067571-56067821(+)$1	250	55	87	35.6850
AAAAUGUCCCCCCCGCUCCGUCCCCCAAACAU	chr20:36033326-36033584(+)$1	258	12	44	37.3597
CAAAAAUACUUUGCUCUCUUCUUCUUUUUUGU	chr14:81940958-81941205(-)$1	247	186	218	35.9616
CAUGGAUCACACACCAAACCUUAAUAACAGCA	chr2:208628373-208628664(-)$1	291	167	199	33.0180
UAAGGCCUUAUCACCUCCCCUGCCCAUAGGCC	chr1:56961501-56961765(-)$1	264	102	134	31.8809
ACCCUUAGGAAAAAUGAAAUUAACAUCACUGA	chr12:1897159-1897465(+)$1	306	205	237	36.0007
CCCAACCCUGUAAUCAACCCCUACCAGCCAGC	chr8:101721588-101721796(-)$1	208	41	73	38.2736
ACACAUCUUGAAAAAUAAAACGAUAAUAGAAC	chr1:8072482-8072738(-)$1	256	162	194	34.4899
ACCUACUCCUCCUAGCCCCCUAUCCCCAGUAA	chr8:121550611-121550869(-)$1	258	153	185	37.4151
UUACCAUGAAAAAACUACAUAAAAUGGCUCCC	chr13:96446497-96446763(+)$1	266	79	111	35.5415
CUCCUUUUUAUUCCCUUCCUUCAGAAAUGCCC	chr12:57118191-57118409(-)$1	218	78	110	38.2172
GGAAGAUGUCCCUCCCCUCACUGCCCCACAUU	chr20:30754555-30754858(+)$1	303	126	158	32.6703
AAUUUUUUUAUUACUGAUUUUGUUAUUUUUAU	chr1:43392247-43392502(-)$1	255	23	55	37.3814
AUCCACAAAGUACUCCUCACUUUUCAAUUUGU	chr5:179157705-179157963(+)$1	258	145	177	31.9212
GAGGUUGCauuuauuuauuuauuuauuuaCCC	chr16:4014731-4014978(-)$1	247	66	98	36.7385
UACCAAUAUCCUGACACCAUUCUCUCUCCAUU	chr2:54895925-54896148(+)$1	223	156	188	38.2275
UUACACUCAACCAUGACCUCACCCCUCCUUGG	chr1:236139951-236140255(-)$1	304	103	135	38.1678
GACUUCUGCCCCAUCCCUUCCUGCCCAACCUA	chr5:172378193-172378441(+)$1	248	193	225	35.9046
CCAUGACCUUCCGCACAUCUCUAAGUUUUAUC	chr14:21820239-21820523(-)$1	284	120	152	36.3387
UUCAAACGUAAUAGCAUUAAGAAGAUCGUGUG	chr17:29700937-29701236(+)$1	299	203	235	31.9201
UGAGAGAGCAGCACAUCAUUUUAUCAUUUUAU	chr17:56423300-56423551(-)$1	251	68	100	34.5431
CAUGAAAUGCCACACACAUAGAACUCCAACAU	chr2:55199440-55199712(-)$1	272	124	156	35.0046
GAGAGCGCugugugugugugugugugugugug	chr12:56991333-56991549(-)$1	216	83	115	34.7618
ACCACUCAAAUUAAUCUUUCUUUACCUGAGAC	chr1:43392126-43392332(-)$1	206	159	191	32.4157
UUUGCUUAUAUGUUAAUAGUUUUACCCUCUGC	chr3:30734576-30734829(+)$1	253	71	103	37.3245
GCUGCCAAAUCCAGUAUUAUAAAGUCCAUGGU	chr18:56996372-56996627(-)$1	255	23	55	31.8151
aagcagccauagacaacacacaaacgagaggg	chr5:172743152-172743385(-)$1	233	135	167	34.8182
GGUACCCAGCAGCGCCUCACACCCUCUCUCUC	chr20:33148634-33148884(-)$1	250	62	94	36.0787
GUUUGUCAAUUACUGAAUUCUCCCUUCCCUGC	chrX:118920376-118920653(-)$1	277	203	235	33.8707
UUAUGCAGUUGUACAAUUUUAUUUUUUUCUGC	chr1:169101523-169101738(+)$1	215	176	208	33.2377
CAGGAAGUGGCCAAAAGCUAGACAGAUCCCCG	chr5:149781440-149781672(-)$1	232	102	134	30.7542
CCUCAGAAUUCACAAAAUUUCCACAAAAUCUG	chr20:30253360-30253614(-)$1	254	71	103	36.6620
AUUUUACUUUCCUGCAAAAUUUUCUUCAAAGC	chr16:85706417-85706707(+)$1	290	242	274	37.8204
GAUUGUCCCUGGGUGUGUCUUUGUGAAUGGGU	chr16:8951865-8952227(-)$1	362	259	291	34.4438
AUUAAUUAAAAUUAACCCUAAAGCCAUUUGGU	chr12:57118153-57118391(-)$1	238	180	212	37.8894
CCAACGGACCAACCCCUCAAUACCAAACCACC	chr2:159481531-159481793(+)$1	262	150	182	37.3139
UAUUAGCUUUUUAAGUUCCUUCCAAAUAUGUU	chr8:126449293-126449574(+)$1	281	216	248	35.7897
GCCCUCCGUCACCUCUUCACCGCACCCUCGGA	chr11:61734879-61735085(-)$1	206	80	112	36.2756
UCAAACUGCCUAUAUUGAUAAAACCAUACAGU	chr2:21224297-21224559(-)$1	262	24	56	32.1283
CACGUGGGCAAAGUAAUCAUCGUUCAGGCCCA	chr14:89628294-89628561(-)$1	267	191	223	33.6651
GCAUUAUACUUAACUUUGAUUCACCAUGGUUG	chr8:17427186-17427426(+)$1	240	77	109	32.4762
CUGGGACUUCUUUUCUGCCACCUUGCUUGUCU	chr15:77345018-77345263(-)$1	245	212	244	33.7827
CAGAUCUUUCUUGCAAUUAUGAUAACAUGAGA	chr2:98373294-98373578(-)$1	284	178	210	31.5487
CAGUCCCCAUCAUCACUACUCCUCCCCAGAGA	chr16:4013980-4014261(-)$1	281	115	147	37.8204
AAGAAGAGGCCAAAACUUCAAAUCCAACUUCU	chr20:2945539-2945832(+)$1	293	24	56	32.5813
UUUCUCCCUCCUCCUCAAGUUCCUUUUUGCAC	chr20:48698556-48698846(-)$1	290	245	277	38.2275
ACAAAUAGAAAACUAGUAACUACCAUCCAUCC	chrX:131513428-131513711(-)$1	283	215	247	34.9238

#DB
((.(((((........................	chr1:154437564-154437916(+)$1	1	195	227	34.8891
((((((((....................))))	chr17:41064601-41064881(+)$1	1	31	63	35.4806
..((((((....................))))	chr8:71023301-71023599(-)$1	1	174	206	34.6836
.(((((((....................))))	chr9:34635415-34635734(-)$1	1	190	222	35.1554
((..........................))))	chr11:18429074-18429349(+)$1	1	95	127	37.5474
(((((.......................))).	chr4:39452078-39452325(+)$1	1	156	188	36.4601
............................))))	chr7:128410476-128410740(+)$1	1	140	172	37.8204
............................))))	chr6:52367624-52367876(-)$1	1	54	86	38.1678
((..((((..................)))).)	chr7:104746934-104747183(+)$1	1	150	182	32.7958
............................))))	chr10:82278693-82278947(+)$1	1	16	48	37.8204
(...((......................)).)	chr8:17502874-17503139(-)$1	1	205	237	36.1295
))).((((....................))))	chr11:61734788-61735067(-)$1	1	62	94	34.6184
............................))))	chr16:23582421-23582701(+)$1	1	25	57	38.2376
............................))))	chr16:69737323-69737581(+)$1	1	87	119	38.2736
...(((((......................))	chr2:96851150-96851414(-)$1	1	211	243	36.3365
)..((((.....................))))	chr20:30253493-30253732(-)$1	1	189	221	33.6310
((..........................))).	chr17:37008817-37009031(-)$1	1	12	44	37.8344
....((((....................))))	chr2:27263939-27264188(+)$1	1	141	173	34.7952
.(((((((......................))	chr18:74074005-74074260(-)$1	1	151	183	35.3940
...(((((....................))))	chr1:169100767-169101022(+)$1	1	68	100	35.7667
.(((.(((....................))).	chr18:56067571-56067821(+)$1	1	55	87	35.6850
............................))))	chr20:36033326-36033584(+)$1	1	12	44	37.3597
((..((((.....................)))	chr14:81940958-81941205(-)$1	1	186	218	35.9616
((((((((.....................).)	chr2:208628373-208628664(-)$1	1	167	199	33.0180
...(((((...................)))))	chr1:56961501-56961765(-)$1	1	102	134	31.8809
....((((....................))))	chr12:1897159-1897465(+)$1	1	205	237	36.0007
............................))))	chr8:101721588-101721796(-)$1	1	41	73	38.2736
((...(((...................)))..	chr1:8072482-8072738(-)$1	1	162	194	34.4899
((..........................))))	chr8:121550611-121550869(-)$1	1	153	185	37.4151
((((((.(......................).	chr13:96446497-96446763(+)$1	1	79	111	35.5415
............................)))(	chr12:57118191-57118409(-)$1	1	78	110	38.2172
(((.(((((..................)))))	chr20:30754555-30754858(+)$1	1	126	158	32.6703
((..........................))))	chr1:43392247-43392502(-)$1	1	23	55	37.3814
....(((((..................)))))	chr5:179157705-179157963(+)$1	1	145	177	31.9212
(.(((.......................))))	chr16:4014731-4014978(-)$1	1	66	98	36.7385
............................))))	chr2:54895925-54896148(+)$1	1	156	188	38.2275
............................))))	chr1:236139951-236140255(-)$1	1	103	135	38.1678
(..(((((......................))	chr5:172378193-172378441(+)$1	1	193	225	35.9046
(...((........................))	chr14:21820239-21820523(-)$1	1	120	152	36.3387
((((.(((..................))).))	chr17:29700937-29701236(+)$1	1	203	235	31.9201
(.((((((........................	chr17:56423300-56423551(-)$1	1	68	100	34.5431
.(((((((........................	chr2:55199440-55199712(-)$1	1	124	156	35.0046
.(..((((...................)))).	chr12:56991333-56991549(-)$1	1	83	115	34.7618
((..((((..................))))..	chr1:43392126-43392332(-)$1	1	159	191	32.4157
..(((.........................))	chr3:30734576-30734829(+)$1	1	71	103	37.3245
(((((((.....................))))	chr18:56996372-56996627(-)$1	1	23	55	31.8151
..))((((......................))	chr5:172743152-172743385(-)$1	1	135	167	34.8182
((..........................))))	chr20:33148634-33148884(-)$1	1	62	94	36.0787
(((((.((.....................)).	chrX:118920376-118920653(-)$1	1	203	235	33.8707
...(((((....................))))	chr1:169101523-169101738(+)$1	1	176	208	33.2377
((((((..((..................))..	chr5:149781440-149781672(-)$1	1	102	134	30.7542
...((((.....................))))	chr20:30253360-30253614(-)$1	1	71	103	36.6620
............................))))	chr16:85706417-85706707(+)$1	1	242	274	37.8204
.((...(((...................))).	chr16:8951865-8952227(-)$1	1	259	291	34.4438
(...........................))))	chr12:57118153-57118391(-)$1	1	180	212	37.8894
....(((.......................))	chr2:159481531-159481793(+)$1	1	150	182	37.3139
(((((((......................)))	chr8:126449293-126449574(+)$1	1	216	248	35.7897
(...((((....................))))	chr11:61734879-61735085(-)$1	1	80	112	36.2756
((..((((....................))))	chr2:21224297-21224559(-)$1	1	24	56	32.1283
....(((((..................)))))	chr14:89628294-89628561(-)$1	1	191	223	33.6651
((((((..(..................)..))	chr8:17427186-17427426(+)$1	1	77	109	32.4762
...((((.....................))))	chr15:77345018-77345263(-)$1	1	212	244	33.7827
((((((((....................))))	chr2:98373294-98373578(-)$1	1	178	210	31.5487
............................))))	chr16:4013980-4014261(-)$1	1	115	147	37.8204
..(((((((..................)))))	chr20:2945539-2945832(+)$1	1	24	56	32.5813
............................))))	chr20:48698556-48698846(-)$1	1	245	277	38.2275
.(((((((.......................)	chrX:131513428-131513711(-)$1	1	215	247	34.9238

#PSSM
^ : 0.19	c : 0.10	f : 0.08	d : 0.07	[ : 0.05	g : 0.05	e : 0.04	! : 0.04	# : 0.04	$ : 0.04	h : 0.04	: : 0.04	D : 0.02	" : 0.02	= : 0.01	% : 0.01	' : 0.01	J : 0.01	o : 0.01	( : 0.01	
^ : 0.20	g : 0.11	f : 0.08	c : 0.07	! : 0.05	" : 0.05	: : 0.05	e : 0.04	# : 0.04	h : 0.04	$ : 0.02	[ : 0.02	= : 0.01	% : 0.01	d : 0.01	' : 0.01	a : 0.01	J : 0.01	o : 0.01	b : 0.01	D : 0.01	
^ : 0.28	g : 0.10	f : 0.08	c : 0.08	! : 0.07	" : 0.07	: : 0.07	# : 0.04	$ : 0.02	h : 0.02	b : 0.02	[ : 0.01	= : 0.01	% : 0.01	' : 0.01	J : 0.01	
^ : 0.28	g : 0.10	e : 0.08	f : 0.08	" : 0.07	c : 0.05	! : 0.05	d : 0.05	: : 0.02	h : 0.02	# : 0.02	= : 0.01	% : 0.01	$ : 0.01	[ : 0.01	' : 0.01	b : 0.01	
^ : 0.28	d : 0.20	e : 0.13	g : 0.10	f : 0.07	c : 0.05	b : 0.02	[ : 0.02	h : 0.02	" : 0.02	= : 0.01	
^ : 0.32	d : 0.20	e : 0.13	g : 0.10	f : 0.05	c : 0.05	b : 0.02	h : 0.02	= : 0.01	[ : 0.01	" : 0.01	
^ : 0.35	d : 0.20	e : 0.13	g : 0.08	c : 0.07	f : 0.02	h : 0.02	! : 0.02	= : 0.01	[ : 0.01	b : 0.01	
^ : 0.44	d : 0.14	e : 0.13	g : 0.07	c : 0.05	f : 0.02	a : 0.02	! : 0.02	= : 0.01	b : 0.01	h : 0.01	
^ : 0.89	e : 0.04	b : 0.01	c : 0.01	a : 0.01	g : 0.01	
^ : 0.98	b : 0.01	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.95	d : 0.02	c : 0.01	
^ : 0.83	e : 0.05	d : 0.04	c : 0.02	a : 0.01	g : 0.01	
^ : 0.23	d : 0.23	e : 0.13	c : 0.11	f : 0.07	g : 0.07	h : 0.04	= : 0.02	b : 0.02	2 : 0.01	
d : 0.25	^ : 0.17	e : 0.13	c : 0.10	g : 0.08	f : 0.07	b : 0.04	h : 0.04	= : 0.02	a : 0.01	] : 0.01	2 : 0.01	
d : 0.23	e : 0.16	c : 0.11	f : 0.10	g : 0.10	^ : 0.05	] : 0.04	h : 0.04	= : 0.02	4 : 0.02	b : 0.02	a : 0.01	2 : 0.01	
d : 0.25	e : 0.16	f : 0.11	g : 0.11	] : 0.08	h : 0.05	^ : 0.04	c : 0.04	= : 0.02	4 : 0.02	b : 0.01	3 : 0.01	2 : 0.01	

#score	2372.9272043276733
#seq	67
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_CDS_m3_run1.txt

#BEAR
Fdddd[ddddnnnnndddd]ddddc	chr16:85646851-85647098(+)$1	247	174	199	9.8548
eee[ffffffnnnnnffffff22ee	chr19:1470054-1470278(-)$1	224	176	201	10.9751
ddd!!eeeeennnnneeeee22ddd	chr11:2005485-2005800(+)$1	315	271	296	11.2597
fffff"""bbnnnnnbb22ffffff	chr5:138629682-138629979(+)$1	297	153	178	11.0329
eeeeeeeeeennnnneeeee333ee	chr11:557748-558010(+)$1	262	111	136	11.8673
d[eeeee[bboooooobbeeeee22	chr22:50016599-50016925(-)$1	326	262	287	8.8479
ccc"""cccooooooccc333ccc:	chr17:46627702-46628017(+)$1	315	19	44	8.1998
[bb[ccc[bbnnnnnbbccc]bbbb	chr17:80676113-80676430(+)$1	317	69	94	10.8717
:ddddccc[annnnna]ccc]dddd	chr16:447729-448032(+)$1	303	63	88	10.3461
d"""ccccccnnnnnccc4444ccc	chr11:63884788-63885087(-)$1	299	53	78	12.3159
c[ccc[ddddnnnnnddddcccccc	chr21:45562978-45563236(+)$1	258	213	238	10.9986
ggggggg[bbnnnnnbb]ggggggg	chr18:3452048-3452315(+)$1	267	183	208	12.7213
cc"""eeeeennnnneeeee4444c	chr11:2407199-2407452(+)$1	253	206	231	11.6173
###gggggggnnnnngggggggeee	chr11:126146102-126146394(+)$1	292	160	185	12.3541
ffffff[cccnnnnnccc]ffffff	chr19:1467744-1467982(-)$1	238	164	189	11.2880
eee[ccc[bbnnnnnbb]ccceeee	chr19:577689-577966(+)$1	277	82	107	12.1933
gggggg"""annnnna333gggggg	chr16:4431602-4431878(-)$1	276	95	120	12.7196
bccc[eeeeennnnneeeee22ccc	chr9:101867329-101867617(+)$1	288	129	154	11.1895
d[bbffffffnnnnnffffff]bb2	chr11:63885659-63885898(-)$1	239	135	160	10.3478
[iiiiiiiiinnnnniiiiiiiiic	chr7:100171699-100171999(-)$1	300	57	82	12.5914
eee[ffffffnnnnnffffff22ee	chr11:63885581-63885852(-)$1	271	198	223	10.9751
cc[gggggggnnnnnggggggg]cc	chr5:154135495-154135744(+)$1	249	120	145	12.3544
!!eeeee[aooooooaeeeee]ddd	chr22:50016958-50017210(-)$1	252	59	84	9.1308
####ffffffnnnnnffffff22a]	chr7:5460766-5461027(-)$1	261	163	188	11.0463
d[eeeee[bbnnnnnbb]eeeee]d	chr19:1433639-1433874(+)$1	235	78	103	12.6563
d[dddd[cccoooooocccdddd]d	chr17:76117142-76117453(-)$1	311	150	175	8.3201
!!bb[bb[bbnnnnnbb]bb]bb22	chr22:50020347-50020610(-)$1	263	75	100	10.4679
hhh"""ddddnnnnndddd333hhh	chr7:1887149-1887398(-)$1	249	154	179	10.3964
eeegggggggnnnnngggggggddd	chr7:127670360-127670609(+)$1	249	22	47	12.2405
$eeeee[cccnnnnnccc]eeeee3	chr16:725957-726270(+)$1	313	96	121	12.5384
eeeddddcccnnnnnccc]dddd44	chr12:132402968-132403223(+)$1	255	141	166	11.6808
eedddd[cccnnnnnccc]dddd88	chr19:18547792-18548093(-)$1	301	160	185	10.8442
iiiiiii!!aooooooa22iiiiii	chr11:63883809-63884105(-)$1	296	14	39	9.2961
eeee[eeeeennnnneeeee]eeee	chr17:36861787-36862080(+)$1	293	174	199	11.8139
d!!gggggggooooooggggggg22	chrX:41193773-41194025(+)$1	252	222	247	9.2862
[eeeee[cccnnnnnccceeeee]b	chr19:10922279-10922538(+)$1	259	218	243	12.3166
bb[ccc[cccnnnnnccc333ccc2	chr16:2105270-2105562(+)$1	292	85	110	12.2525
###ccca[bbnnnnnbb]a]ccc44	chr1:36788084-36788341(+)$1	257	201	226	12.4137
!!ddddcccooooooccc]dddd22	chr20:31172308-31172546(-)$1	238	154	179	8.3224
ggggggg!!aooooooa22gggggg	chr7:127670525-127670759(+)$1	234	151	176	9.1707
iiiiii[cccnnnnnccc22iiiii	chr17:79657055-79657314(+)$1	259	7	32	12.5942
eeeee"""bbnnnnnbb333eeeee	chr19:2425975-2426264(-)$1	289	168	193	12.5616
[iiiiiiiiinnnnniiiiiiiii]	chr4:1804549-1804793(+)$1	244	196	221	12.6786
d[eeeee[bbnnnnnbbeeeee]dd	chr19:2270568-2270794(+)$1	226	8	33	12.4787
+++gggggggnnnnngggggggddd	chr19:36517709-36517988(+)$1	279	121	146	10.2830
ddbb[eeeeennnnneeeee]bb44	chr9:139235381-139235651(+)$1	270	171	196	10.8408
bb[bb"""bbnnnnnbb333bb]bb	chr2:54197737-54198042(-)$1	305	209	234	10.4341
[ccc[eeeeennnnneeeee]ccc]	chr2:232574798-232575066(+)$1	268	238	263	11.9258
iiiii"""bbnnnnnbb22iiiiii	chr16:2580595-2580934(+)$1	339	303	328	12.5424
eeeee[ddddnnnnndddd]eeeee	chr1:228329268-228329579(+)$1	311	278	303	11.0026
d!!gggggggooooooggggggg22	chrX:41193840-41194081(+)$1	241	155	180	9.2862
d[eeeee[bbnnnnnbbeeeee]dd	chr19:2270395-2270671(+)$1	276	181	206	12.4787

#otherMatches

#Seq PSSM
GGGGACGGGGUCCUCCCCCCUCCCC	chr16:85646851-85647098(+)$1	247	174	199	9.8548
CCGAGCGGCUGGGGGAGCCGUGCCG	chr19:1470054-1470278(-)$1	224	176	201	10.9751
CUCCAGGUGGAGCUGCCGCCGUGAG	chr11:2005485-2005800(+)$1	315	271	296	11.2597
GCGGGGGCGGGACGACUAGCCCGUU	chr5:138629682-138629979(+)$1	297	153	178	11.0329
GGAGGGCUUGGGGGACAGGCUCACC	chr11:557748-558010(+)$1	262	111	136	11.8673
AGUUCCGUGAGCUCCGUCUGGAAGG	chr22:50016599-50016925(-)$1	326	262	287	8.8479
CUUGGAUUCUACCCUGAGGAGGAGG	chr17:46627702-46628017(+)$1	315	19	44	8.1998
ACUGCUGUGUGGUGAGCCAGGGGGA	chr17:80676113-80676430(+)$1	317	69	94	10.8717
UGACUGGGACGUCAGGCCCCAAGUc	chr16:447729-448032(+)$1	303	63	88	10.3461
GUGGCCAUGGGGUAGUCAAUGUUGG	chr11:63884788-63885087(-)$1	299	53	78	12.3159
CGCAGAGGCCAUCAAGGCCCUGGGU	chr21:45562978-45563236(+)$1	258	213	238	10.9986
GGCGCGCUGCCCACAGCCGCGUGCC	chr18:3452048-3452315(+)$1	267	183	208	12.7213
gcuuuuuugcuguguguggaucuug	chr11:2407199-2407452(+)$1	253	206	231	11.6173
GUUCGUAACCGCACUGGUUGUGGCA	chr11:126146102-126146394(+)$1	292	160	185	12.3541
CACGGCCUCCUCAGUGGGCGUCGUG	chr19:1467744-1467982(-)$1	238	164	189	11.2880
AGCCGGCUUCGUCCAGGCGCCGCUG	chr19:577689-577966(+)$1	277	82	107	12.1933
CAGUUGAAGGGGUUGCGGGCAGCUG	chr16:4431602-4431878(-)$1	276	95	120	12.7196
gccgggcCACAGGCGGUGGCGGCGG	chr9:101867329-101867617(+)$1	288	129	154	11.1895
CAUGUGUAGGAGUAGUCUAUGUCGG	chr11:63885659-63885898(-)$1	239	135	160	10.3478
AGGGGGCCCCGGGAAGGGGCCUCCC	chr7:100171699-100171999(-)$1	300	57	82	12.5914
AGAUAGUGUGGACCACGUACUCUUC	chr11:63885581-63885852(-)$1	271	198	223	10.9751
GCGCUGGCGGAGGAGCUGCCGGAgc	chr5:154135495-154135744(+)$1	249	120	145	12.3544
ACGGGGCAcagcagaggccucaccu	chr22:50016958-50017210(-)$1	252	59	84	9.1308
ACUUCGGGCCCCAGCGGUCCGUGCA	chr7:5460766-5461027(-)$1	261	163	188	11.0463
CUGGUCUCGUCUCUUGCCAGGCCUG	chr19:1433639-1433874(+)$1	235	78	103	12.6563
UGCCCGCUCCCACCAUGGAUGGGGG	chr17:76117142-76117453(-)$1	311	150	175	8.3201
CAGUGGACGUGGAAGGCUUUGAUGA	chr22:50020347-50020610(-)$1	263	75	100	10.4679
AUCUCCAUGCUGUGUGCAUCCCGGU	chr7:1887149-1887398(-)$1	249	154	179	10.3964
AGGACCUCCAGGUGGUGGAGGUGGC	chr7:127670360-127670609(+)$1	249	22	47	12.2405
gagggcgggCAGCUGGCUGGUCUUG	chr16:725957-726270(+)$1	313	96	121	12.5384
GCCCCUGAGCUCCCUGCUCCAGGAC	chr12:132402968-132403223(+)$1	255	141	166	11.6808
GUGUCUGCUGACCCCCAGGAGGCCA	chr19:18547792-18548093(-)$1	301	160	185	10.8442
GGUCAUUCUCGUAUAGGUAGAUGAC	chr11:63883809-63884105(-)$1	296	14	39	9.2961
AUGGGCACGCGUGCAGCGUGGUCGU	chr17:36861787-36862080(+)$1	293	174	199	11.8139
CGGUGUUUGCGUGCCUGCGAGCAAG	chrX:41193773-41194025(+)$1	252	222	247	9.2862
GCUCCUUCAAUGUCCUUGGGGAGGG	chr19:10922279-10922538(+)$1	259	218	243	12.3166
AGAUGUAGAUUCGGCGUCCUCGCAA	chr16:2105270-2105562(+)$1	292	85	110	12.2525
GACGCCCAGCACGAAGUAGAGGCCG	chr1:36788084-36788341(+)$1	257	201	226	12.4137
GUGCCGGUCAAGACGGGCUCGGUGA	chr20:31172308-31172546(-)$1	238	154	179	8.3224
UGCCACAAGAGCUUCAUGGUGUGGC	chr7:127670525-127670759(+)$1	234	151	176	9.1707
GGGGCAGGAGGCUGUCUCGGUGCCC	chr17:79657055-79657314(+)$1	259	7	32	12.5942
CACGUGGUGGUCACUCCUGGAUGUG	chr19:2425975-2426264(-)$1	289	168	193	12.5616
GUGGCCGAGAAGGCCUUUUGGCUGA	chr4:1804549-1804793(+)$1	244	196	221	12.6786
CGGGAAGACGCGUCCCGCUUCCGGG	chr19:2270568-2270794(+)$1	226	8	33	12.4787
ACUUGGGGGUAGGGGGCCCUCACCG	chr19:36517709-36517988(+)$1	279	121	146	10.2830
GCAGCCGCCAGAAAAUGGCGCCUAC	chr9:139235381-139235651(+)$1	270	171	196	10.8408
AGGAGAUCGUCUACAACAAGCUGCU	chr2:54197737-54198042(-)$1	305	209	234	10.4341
GGCCACGUGCUCCCUGCGCGCGGUG	chr2:232574798-232575066(+)$1	268	238	263	11.9258
GCCGCGCACCCCUUAGGAAGUGGCU	chr16:2580595-2580934(+)$1	339	303	328	12.5424
GUUGUGUGGCUUCUUGCCAGGCAGC	chr1:228329268-228329579(+)$1	311	278	303	11.0026
CGGUGUUUGCGUGCCUGCGAGCAAG	chrX:41193840-41194081(+)$1	241	155	180	9.2862
CGGGAAGACGCGUCCCGCUUCCGGG	chr19:2270395-2270671(+)$1	276	181	206	12.4787

#DB
(((((.((((.....)))).))))(	chr16:85646851-85647098(+)$1	1	174	199	9.8548
(((.((((((.....))))))..))	chr19:1470054-1470278(-)$1	1	176	201	10.9751
(((..(((((.....)))))..)))	chr11:2005485-2005800(+)$1	1	271	296	11.2597
(((((...((.....))..))))))	chr5:138629682-138629979(+)$1	1	153	178	11.0329
((((((((((.....)))))...))	chr11:557748-558010(+)$1	1	111	136	11.8673
(.(((((.((......)))))))..	chr22:50016599-50016925(-)$1	1	262	287	8.8479
(((...(((......)))...))).	chr17:46627702-46628017(+)$1	1	19	44	8.1998
.((.(((.((.....))))).))))	chr17:80676113-80676430(+)$1	1	69	94	10.8717
.(((((((.(.....).))).))))	chr16:447729-448032(+)$1	1	63	88	10.3461
(...((((((.....)))....)))	chr11:63884788-63885087(-)$1	1	53	78	12.3159
(.(((.((((.....))))))))))	chr21:45562978-45563236(+)$1	1	213	238	10.9986
(((((((.((.....)).)))))))	chr18:3452048-3452315(+)$1	1	183	208	12.7213
((...(((((.....)))))....)	chr11:2407199-2407452(+)$1	1	206	231	11.6173
...(((((((.....))))))))))	chr11:126146102-126146394(+)$1	1	160	185	12.3541
((((((.(((.....))).))))))	chr19:1467744-1467982(-)$1	1	164	189	11.2880
(((.(((.((.....)).)))))))	chr19:577689-577966(+)$1	1	82	107	12.1933
((((((...(.....)...))))))	chr16:4431602-4431878(-)$1	1	95	120	12.7196
((((.(((((.....)))))..)))	chr9:101867329-101867617(+)$1	1	129	154	11.1895
(.((((((((.....)))))).)).	chr11:63885659-63885898(-)$1	1	135	160	10.3478
.(((((((((.....))))))))))	chr7:100171699-100171999(-)$1	1	57	82	12.5914
(((.((((((.....))))))..))	chr11:63885581-63885852(-)$1	1	198	223	10.9751
((.(((((((.....))))))).))	chr5:154135495-154135744(+)$1	1	120	145	12.3544
..(((((.(......)))))).)))	chr22:50016958-50017210(-)$1	1	59	84	9.1308
....((((((.....))))))..).	chr7:5460766-5461027(-)$1	1	163	188	11.0463
(.(((((.((.....)).))))).)	chr19:1433639-1433874(+)$1	1	78	103	12.6563
(.((((.(((......))))))).)	chr17:76117142-76117453(-)$1	1	150	175	8.3201
..((.((.((.....)).)).))..	chr22:50020347-50020610(-)$1	1	75	100	10.4679
(((...((((.....))))...)))	chr7:1887149-1887398(-)$1	1	154	179	10.3964
)))(((((((.....)))))))(((	chr7:127670360-127670609(+)$1	1	22	47	12.2405
.(((((.(((.....))).))))).	chr16:725957-726270(+)$1	1	96	121	12.5384
((((((((((.....))).))))..	chr12:132402968-132403223(+)$1	1	141	166	11.6808
((((((.(((.....))).))))..	chr19:18547792-18548093(-)$1	1	160	185	10.8442
(((((((..(......)..))))))	chr11:63883809-63884105(-)$1	1	14	39	9.2961
((((.(((((.....))))).))))	chr17:36861787-36862080(+)$1	1	174	199	11.8139
(..(((((((......)))))))..	chrX:41193773-41194025(+)$1	1	222	247	9.2862
.(((((.(((.....)))))))).)	chr19:10922279-10922538(+)$1	1	218	243	12.3166
((.(((.(((.....)))...))).	chr16:2105270-2105562(+)$1	1	85	110	12.2525
...((((.((.....)).).)))..	chr1:36788084-36788341(+)$1	1	201	226	12.4137
..(((((((......))).))))..	chr20:31172308-31172546(-)$1	1	154	179	8.3224
(((((((..(......)..))))))	chr7:127670525-127670759(+)$1	1	151	176	9.1707
((((((.(((.....)))..)))))	chr17:79657055-79657314(+)$1	1	7	32	12.5942
(((((...((.....))...)))))	chr19:2425975-2426264(-)$1	1	168	193	12.5616
.(((((((((.....))))))))).	chr4:1804549-1804793(+)$1	1	196	221	12.6786
(.(((((.((.....))))))).))	chr19:2270568-2270794(+)$1	1	8	33	12.4787
...(((((((.....))))))))))	chr19:36517709-36517988(+)$1	1	121	146	10.2830
((((.(((((.....))))).))..	chr9:139235381-139235651(+)$1	1	171	196	10.8408
((.((...((.....))...)).))	chr2:54197737-54198042(-)$1	1	209	234	10.4341
.(((.(((((.....))))).))).	chr2:232574798-232575066(+)$1	1	238	263	11.9258
(((((...((.....))..))))))	chr16:2580595-2580934(+)$1	1	303	328	12.5424
(((((.((((.....)))).)))))	chr1:228329268-228329579(+)$1	1	278	303	11.0026
(..(((((((......)))))))..	chrX:41193840-41194081(+)$1	1	155	180	9.2862
(.(((((.((.....))))))).))	chr19:2270395-2270671(+)$1	1	181	206	12.4787

#PSSM
d : 0.21	e : 0.19	[ : 0.09	c : 0.07	g : 0.05	# : 0.05	b : 0.05	! : 0.05	i : 0.05	f : 0.03	F : 0.01	: : 0.01	h : 0.01	$ : 0.01	+ : 0.01	
e : 0.23	[ : 0.13	c : 0.09	i : 0.09	! : 0.09	d : 0.07	b : 0.05	g : 0.05	# : 0.05	f : 0.03	" : 0.01	h : 0.01	+ : 0.01	
e : 0.30	d : 0.11	i : 0.09	c : 0.07	b : 0.07	g : 0.05	# : 0.05	[ : 0.05	f : 0.03	" : 0.03	! : 0.03	h : 0.01	+ : 0.01	
e : 0.21	g : 0.17	d : 0.11	c : 0.09	i : 0.09	[ : 0.07	" : 0.07	b : 0.07	f : 0.03	! : 0.01	# : 0.01	
e : 0.19	g : 0.17	d : 0.11	f : 0.11	c : 0.11	[ : 0.09	i : 0.09	" : 0.05	! : 0.01	b : 0.01	
e : 0.26	g : 0.17	" : 0.11	c : 0.11	f : 0.09	i : 0.07	d : 0.07	[ : 0.05	b : 0.01	
e : 0.23	g : 0.15	[ : 0.13	c : 0.11	d : 0.09	" : 0.09	f : 0.07	i : 0.05	b : 0.01	a : 0.01	
c : 0.23	[ : 0.19	e : 0.13	g : 0.11	" : 0.09	d : 0.07	f : 0.07	i : 0.03	! : 0.03	
b : 0.24	c : 0.21	e : 0.13	g : 0.11	d : 0.07	f : 0.07	i : 0.03	! : 0.03	[ : 0.01	" : 0.01	a : 0.01	
b : 0.24	c : 0.17	e : 0.13	g : 0.11	d : 0.07	f : 0.07	a : 0.07	o : 0.05	i : 0.03	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
b : 0.23	c : 0.19	e : 0.13	o : 0.11	d : 0.07	f : 0.07	g : 0.07	a : 0.05	i : 0.03	
b : 0.24	c : 0.21	e : 0.15	g : 0.11	d : 0.07	f : 0.07	i : 0.03	a : 0.03	] : 0.01	3 : 0.01	
c : 0.24	e : 0.19	g : 0.11	] : 0.09	d : 0.07	f : 0.07	2 : 0.07	3 : 0.05	i : 0.03	b : 0.01	
e : 0.24	g : 0.13	2 : 0.09	3 : 0.09	] : 0.09	d : 0.07	f : 0.07	c : 0.07	i : 0.03	4 : 0.01	b : 0.01	a : 0.01	
e : 0.26	g : 0.17	f : 0.11	3 : 0.09	c : 0.07	i : 0.07	d : 0.07	] : 0.05	4 : 0.01	b : 0.01	2 : 0.01	
e : 0.17	g : 0.17	f : 0.11	] : 0.11	d : 0.09	i : 0.09	3 : 0.07	c : 0.05	2 : 0.03	4 : 0.03	b : 0.01	
e : 0.19	g : 0.17	d : 0.11	2 : 0.09	c : 0.09	i : 0.09	b : 0.07	f : 0.03	3 : 0.03	4 : 0.03	] : 0.03	
d : 0.19	e : 0.17	c : 0.13	g : 0.09	i : 0.09	b : 0.07	] : 0.07	2 : 0.05	f : 0.03	3 : 0.01	4 : 0.01	h : 0.01	
e : 0.17	d : 0.15	c : 0.13	2 : 0.09	i : 0.09	4 : 0.07	b : 0.05	g : 0.05	] : 0.05	f : 0.03	a : 0.01	h : 0.01	8 : 0.01	
d : 0.17	e : 0.15	c : 0.13	2 : 0.13	b : 0.05	g : 0.05	] : 0.05	4 : 0.05	i : 0.05	f : 0.03	: : 0.01	h : 0.01	3 : 0.01	8 : 0.01	

#score	580.2242437679987
#seq	52
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_CDS_m3_run2.txt

#BEAR
hhhhhhsssssssssshhhhh	chr19:10406926-10407198(+)$1	272	26	47	10.6100
!!ddddvvvvvvvvvvvvvdd	chr19:41889442-41889750(+)$1	308	165	186	14.0086
ggg[bbtttttttttttbb]g	chr16:31202298-31202532(+)$1	234	175	196	14.0327
eeeeettttttttttteeeee	chr19:2425982-2426253(-)$1	271	26	47	14.1615
dddcccssssssssssccc]d	chr19:50162936-50163186(-)$1	250	167	188	12.8292
ii:cccvvvvvvvvvvvvvcc	chr1:52254948-52255202(-)$1	254	223	244	12.7374
hhhhhhuuuuuuuuuuuuhhh	chr11:639269-639549(+)$1	280	151	172	12.9682
fffff[arrrrrrrrra]fff	chr5:10261727-10261958(+)$1	231	194	215	9.4517
hhhhhhvvvvvvvvvvvvvhh	chr7:100171695-100171981(-)$1	286	178	199	12.4983
ggg!!cccqqqqqqqqcccgg	chr17:46628023-46628315(+)$1	292	175	196	7.1999
EEddddtttttttttttdddd	chrM:14222-14443(-)$1	221	196	217	12.5766
dddduuuuuuuuuuuudddd3	chr17:73823401-73823770(-)$1	369	208	229	13.2884
c"""bbtttttttttttbb44	chr10:104180922-104181225(+)$1	303	107	128	13.2725
[eeeeevvvvvvvvvvvvvee	chr7:99751398-99751733(+)$1	335	80	101	14.0892
=eeeeeqqqqqqqqeeeee]=	chr19:50163963-50164228(-)$1	265	27	48	7.2498
:eeeeesssssssssseeeee	chr21:45223340-45223615(+)$1	275	108	129	11.6011
gggggggqqqqqqqqgggggg	chr19:10407083-10407366(+)$1	283	65	86	6.3135
[eeeeeqqqqqqqqeeeee]b	chr1:155290189-155290467(+)$1	278	87	108	7.1707
gggcccssssssssssccc]g	chr22:50873283-50873574(+)$1	291	25	46	13.1929
i[ddddrrrrrrrrrdddd]i	chr16:778878-779142(+)$1	264	32	53	10.4867
gg[ddddqqqqqqqqdddd]g	chr1:156109470-156109770(+)$1	300	77	98	7.3197
[ddddtttttttttttddddb	chr17:80443423-80443631(+)$1	208	43	64	14.0695
[eeeeewwwwwwwwwwwwwwe	chr19:18544940-18545222(+)$1	282	62	83	15.4682
c[ddddqqqqqqqqddddccc	chr9:140005100-140005335(-)$1	235	189	210	6.8715
ff[cccsssssssssscccff	chr22:50018406-50018666(-)$1	260	235	256	12.4911
##bb[cccqqqqqqqqccc]b	chr1:12089605-12089925(+)$1	320	75	96	6.3969
e[ddddvvvvvvvvvvvvvdd	chr11:67053775-67054027(+)$1	252	134	155	13.7792
:eeeeesssssssssseeeee	chr5:10262491-10262716(+)$1	225	62	83	11.6011
###cccqqqqqqqqccc4444	chr6:32948375-32948613(+)$1	238	87	108	6.8136
gggggggqqqqqqqqgggggg	chr7:933374-933640(+)$1	266	16	37	6.3135
eeewwwwwwwwwwwwwweeee	chr16:67862465-67862731(-)$1	266	59	80	14.8783
ddddacccqqqqqqqqccc]a	chr16:2871466-2871726(+)$1	260	128	149	7.1670
a[ddddvvvvvvvvvvvvvdd	chr6:33383629-33383934(+)$1	305	73	94	13.8179
ffffffrrrrrrrrrffffff	chr18:9337145-9337454(+)$1	309	79	100	8.6597
[cccuuuuuuuuuuuuccc]b	chr17:80850926-80851219(+)$1	293	235	256	14.0731
===wwwwwwwwwwwwww====	chr17:79993818-79994098(-)$1	280	19	40	15.0724
[dddd[bbrrrrrrrrrbb]d	chr11:293514-293724(+)$1	210	175	196	8.9967
fffffftttttttttttffff	chr2:74689769-74690015(-)$1	246	79	100	13.5867
ddddcccrrrrrrrrrccc]d	chr5:1815888-1816167(+)$1	279	35	56	10.4247
[cccuuuuuuuuuuuucccee	chr22:20100027-20100296(-)$1	269	193	214	14.0443
[eeeeeqqqqqqqqeeeeeff	chr7:150647088-150647340(-)$1	252	164	185	6.9732
ff[ddddqqqqqqqqdddd22	chr8:145617871-145618139(+)$1	268	23	44	6.3668
!!dddduuuuuuuuuuuuddd	chr16:239117-239441(-)$1	324	211	232	14.6431
eeddddtttttttttttdddd	chr16:31202645-31202847(+)$1	202	100	121	14.6716
[eeeeesssssssssseeeee	chrX:153195388-153195773(-)$1	385	309	330	12.8580
eeexxxxxxxxxxxxxxxeee	chr16:18794305-18794533(-)$1	228	65	86	11.3812
iiii[assssssssssa]iii	chr17:37009178-37009420(-)$1	242	193	214	12.6495

#otherMatches

#Seq PSSM
GGGGGCGGUGGGAGAAGCCCC	chr19:10406926-10407198(+)$1	272	26	47	10.6100
CUGCCUCUACAGACCAACAAG	chr19:41889442-41889750(+)$1	308	165	186	14.0086
GAGGCCAUAGGAUAACAGGGU	chr16:31202298-31202532(+)$1	234	175	196	14.0327
GGGUGGUACCAAAAUGCAUCC	chr19:2425982-2426253(-)$1	271	26	47	14.1615
UGUGGACCUGCACAUUUCCAA	chr19:50162936-50163186(-)$1	250	167	188	12.8292
AUCCCCAUUACUGAUAUCAGG	chr1:52254948-52255202(-)$1	254	223	244	12.7374
GUCGCCGCGCAGGUCCAGGGU	chr11:639269-639549(+)$1	280	151	172	12.9682
UGUGUGUAUUUAACAGAGACA	chr5:10261727-10261958(+)$1	231	194	215	9.4517
CUCUCAGAGAAGCACGUGGUG	chr7:100171695-100171981(-)$1	286	178	199	12.4983
GGCUGCCGGCUGGAGAUGGGC	chr17:46628023-46628315(+)$1	292	175	196	7.1999
GGGCUUUGUAUGAUUAUGGGC	chrM:14222-14443(-)$1	221	196	217	12.5766
GGCCAUUACUAGAGGGGGCCU	chr17:73823401-73823770(-)$1	369	208	229	13.2884
GGGGCGCAGGAACAUAACGGA	chr10:104180922-104181225(+)$1	303	107	128	13.2725
CUCUCCUCCAGUGGUCUUUGG	chr7:99751398-99751733(+)$1	335	80	101	14.0892
CGAGGCAGCAGAGGGCCUUAG	chr19:50163963-50164228(-)$1	265	27	48	7.2498
AGGGGUGUAGGGGCCGACCCC	chr21:45223340-45223615(+)$1	275	108	129	11.6011
UCAGGCGAGGCCGUGUGUCUG	chr19:10407083-10407366(+)$1	283	65	86	6.3135
GUUCUUGCAAUAUGAGGAAGA	chr1:155290189-155290467(+)$1	278	87	108	7.1707
GAGGCCUCUGCCACUUGGCUC	chr22:50873283-50873574(+)$1	291	25	46	13.1929
CGCCGCGGCAAGAGGGUGGGG	chr16:778878-779142(+)$1	264	32	53	10.4867
GUAUUUUAUUUAGACAAGAGA	chr1:156109470-156109770(+)$1	300	77	98	7.3197
AUCCUGAAGCUUAAGAAGGGC	chr17:80443423-80443631(+)$1	208	43	64	14.0695
CGCUGCCCCCUCCUCUCUCCG	chr19:18544940-18545222(+)$1	282	62	83	15.4682
GUGAGCAGCAGCCAGCUCUGC	chr9:140005100-140005335(-)$1	235	189	210	6.8715
CAUGAGAUUUAUGUUCCUCUG	chr22:50018406-50018666(-)$1	260	235	256	12.4911
AGGGGUUAGGAGGAAAUGGGC	chr1:12089605-12089925(+)$1	320	75	96	6.3969
UUGGCGCACCCUCCCCUCCCG	chr11:67053775-67054027(+)$1	252	134	155	13.7792
UCUUGAUCACAUUAAUUCAGG	chr5:10262491-10262716(+)$1	225	62	83	11.6011
UCUUCAGACACCAGUGAUUCA	chr6:32948375-32948613(+)$1	238	87	108	6.8136
UGUUCACUGUGCUGUGUGAGC	chr7:933374-933640(+)$1	266	16	37	6.3135
GGCAAGAUCCCCACAAGGCUG	chr16:67862465-67862731(-)$1	266	59	80	14.8783
GGGCCGGUCUGAGCCUACCUG	chr16:2871466-2871726(+)$1	260	128	149	7.1670
CAGCACCCCCUUCUCCCCUGU	chr6:33383629-33383934(+)$1	305	73	94	13.8179
AACAUGAAGUUACACUAUGUU	chr18:9337145-9337454(+)$1	309	79	100	8.6597
GUUUGAGUUGUUUGAAAAAGA	chr17:80850926-80851219(+)$1	293	235	256	14.0731
GGCAAGUUUGCUGGUGAGUCA	chr17:79993818-79994098(-)$1	280	19	40	15.0724
AGGCUGUGACGUCCCCCCAGG	chr11:293514-293724(+)$1	210	175	196	8.9967
AAAUUCCCAUUUCCAUAGAGU	chr2:74689769-74690015(-)$1	246	79	100	13.5867
GAAUAUGGAAAUAUGACAUCA	chr5:1815888-1816167(+)$1	279	35	56	10.4247
ACCUUCCCCUCAUCCUAGGCC	chr22:20100027-20100296(-)$1	269	193	214	14.0443
ACUGGGGCUGUGGACCUGGGA	chr7:150647088-150647340(-)$1	252	164	185	6.9732
CUUCCUUAUGGCUAAAAGGUC	chr8:145617871-145618139(+)$1	268	23	44	6.3668
GAGGUCAGAAGAGAAGGAGGC	chr16:239117-239441(-)$1	324	211	232	14.6431
AGAGGCCGUAUUAAUUAGCCU	chr16:31202645-31202847(+)$1	202	100	121	14.6716
AGAGGCCUCCGACUCAGCCUC	chrX:153195388-153195773(-)$1	385	309	330	12.8580
UUGAACUAUUAAACUUACCAG	chr16:18794305-18794533(-)$1	228	65	86	11.3812
UGGGCCUGUGGCUAAUGACCU	chr17:37009178-37009420(-)$1	242	193	214	12.6495

#DB
((((((..........)))))	chr19:10406926-10407198(+)$1	1	26	47	10.6100
..((((.............))	chr19:41889442-41889750(+)$1	1	165	186	14.0086
(((.((...........)).)	chr16:31202298-31202532(+)$1	1	175	196	14.0327
(((((...........)))))	chr19:2425982-2426253(-)$1	1	26	47	14.1615
((((((..........))).)	chr19:50162936-50163186(-)$1	1	167	188	12.8292
)).(((.............))	chr1:52254948-52255202(-)$1	1	223	244	12.7374
((((((............)))	chr11:639269-639549(+)$1	1	151	172	12.9682
(((((.(.........).)))	chr5:10261727-10261958(+)$1	1	194	215	9.4517
((((((.............))	chr7:100171695-100171981(-)$1	1	178	199	12.4983
(((..(((........)))))	chr17:46628023-46628315(+)$1	1	175	196	7.1999
))((((...........))))	chrM:14222-14443(-)$1	1	196	217	12.5766
((((............)))).	chr17:73823401-73823770(-)$1	1	208	229	13.2884
(...((...........))..	chr10:104180922-104181225(+)$1	1	107	128	13.2725
.(((((.............))	chr7:99751398-99751733(+)$1	1	80	101	14.0892
((((((........))))).)	chr19:50163963-50164228(-)$1	1	27	48	7.2498
.(((((..........)))))	chr21:45223340-45223615(+)$1	1	108	129	11.6011
(((((((........))))))	chr19:10407083-10407366(+)$1	1	65	86	6.3135
.(((((........))))).)	chr1:155290189-155290467(+)$1	1	87	108	7.1707
((((((..........))).)	chr22:50873283-50873574(+)$1	1	25	46	13.1929
(.((((.........)))).)	chr16:778878-779142(+)$1	1	32	53	10.4867
((.((((........)))).)	chr1:156109470-156109770(+)$1	1	77	98	7.3197
.((((...........)))))	chr17:80443423-80443631(+)$1	1	43	64	14.0695
.(((((..............)	chr19:18544940-18545222(+)$1	1	62	83	15.4682
(.((((........)))))))	chr9:140005100-140005335(-)$1	1	189	210	6.8715
((.(((..........)))))	chr22:50018406-50018666(-)$1	1	235	256	12.4911
..((.(((........))).)	chr1:12089605-12089925(+)$1	1	75	96	6.3969
(.((((.............))	chr11:67053775-67054027(+)$1	1	134	155	13.7792
.(((((..........)))))	chr5:10262491-10262716(+)$1	1	62	83	11.6011
...(((........)))....	chr6:32948375-32948613(+)$1	1	87	108	6.8136
(((((((........))))))	chr7:933374-933640(+)$1	1	16	37	6.3135
(((..............))))	chr16:67862465-67862731(-)$1	1	59	80	14.8783
((((((((........))).)	chr16:2871466-2871726(+)$1	1	128	149	7.1670
(.((((.............))	chr6:33383629-33383934(+)$1	1	73	94	13.8179
((((((.........))))))	chr18:9337145-9337454(+)$1	1	79	100	8.6597
.(((............))).)	chr17:80850926-80851219(+)$1	1	235	256	14.0731
(((..............))))	chr17:79993818-79994098(-)$1	1	19	40	15.0724
.((((.((.........)).)	chr11:293514-293724(+)$1	1	175	196	8.9967
((((((...........))))	chr2:74689769-74690015(-)$1	1	79	100	13.5867
(((((((.........))).)	chr5:1815888-1816167(+)$1	1	35	56	10.4247
.(((............)))))	chr22:20100027-20100296(-)$1	1	193	214	14.0443
.(((((........)))))))	chr7:150647088-150647340(-)$1	1	164	185	6.9732
((.((((........))))..	chr8:145617871-145618139(+)$1	1	23	44	6.3668
..((((............)))	chr16:239117-239441(-)$1	1	211	232	14.6431
((((((...........))))	chr16:31202645-31202847(+)$1	1	100	121	14.6716
.(((((..........)))))	chrX:153195388-153195773(-)$1	1	309	330	12.8580
(((...............)))	chr16:18794305-18794533(-)$1	1	65	86	11.3812
((((.(..........).)))	chr17:37009178-37009420(-)$1	1	193	214	12.6495

#PSSM
[ : 0.19	g : 0.12	e : 0.10	f : 0.10	d : 0.08	h : 0.06	i : 0.06	! : 0.04	c : 0.04	= : 0.04	: : 0.04	# : 0.04	E : 0.02	a : 0.02	
e : 0.25	g : 0.12	d : 0.12	f : 0.10	[ : 0.08	h : 0.06	! : 0.04	i : 0.04	# : 0.04	c : 0.04	E : 0.02	" : 0.02	= : 0.02	
d : 0.29	e : 0.23	g : 0.10	h : 0.06	f : 0.06	[ : 0.06	c : 0.04	: : 0.02	" : 0.02	b : 0.02	# : 0.02	= : 0.02	i : 0.02	
d : 0.31	e : 0.19	c : 0.14	h : 0.06	f : 0.06	g : 0.04	w : 0.04	[ : 0.02	! : 0.02	" : 0.02	b : 0.02	x : 0.02	i : 0.02	
d : 0.25	e : 0.19	c : 0.12	h : 0.06	f : 0.06	u : 0.06	b : 0.04	g : 0.04	[ : 0.04	w : 0.04	! : 0.02	a : 0.02	x : 0.02	
d : 0.21	c : 0.19	e : 0.17	h : 0.06	u : 0.06	b : 0.04	t : 0.04	[ : 0.04	g : 0.04	w : 0.04	f : 0.04	x : 0.02	a : 0.02	
s : 0.17	t : 0.14	v : 0.12	u : 0.10	q : 0.10	c : 0.08	w : 0.06	g : 0.04	r : 0.04	d : 0.04	a : 0.02	b : 0.02	x : 0.02	
q : 0.19	s : 0.17	t : 0.14	v : 0.12	u : 0.10	r : 0.08	c : 0.06	w : 0.06	b : 0.02	x : 0.02	
q : 0.25	s : 0.17	t : 0.14	v : 0.12	u : 0.10	r : 0.10	w : 0.06	x : 0.02	
q : 0.25	s : 0.17	t : 0.14	v : 0.12	u : 0.10	r : 0.10	w : 0.06	x : 0.02	
q : 0.25	s : 0.17	t : 0.14	v : 0.12	u : 0.10	r : 0.10	w : 0.06	x : 0.02	
q : 0.25	s : 0.17	t : 0.14	v : 0.12	u : 0.10	r : 0.10	w : 0.06	x : 0.02	
q : 0.25	s : 0.17	t : 0.14	v : 0.12	u : 0.10	r : 0.10	w : 0.06	x : 0.02	
q : 0.25	s : 0.17	t : 0.14	v : 0.12	u : 0.10	r : 0.10	w : 0.06	x : 0.02	
s : 0.17	t : 0.14	q : 0.14	v : 0.12	u : 0.10	r : 0.10	e : 0.06	w : 0.06	d : 0.02	c : 0.02	x : 0.02	
s : 0.17	t : 0.14	v : 0.12	u : 0.10	d : 0.08	r : 0.06	q : 0.06	e : 0.06	w : 0.06	g : 0.04	c : 0.02	f : 0.02	x : 0.02	
c : 0.21	e : 0.14	v : 0.12	d : 0.12	t : 0.10	w : 0.06	u : 0.04	a : 0.04	g : 0.04	h : 0.02	f : 0.02	r : 0.02	x : 0.02	
c : 0.19	e : 0.17	d : 0.17	v : 0.12	b : 0.06	u : 0.04	] : 0.04	g : 0.04	f : 0.04	h : 0.02	w : 0.02	4 : 0.02	= : 0.02	x : 0.02	
c : 0.21	e : 0.19	d : 0.17	v : 0.12	b : 0.06	f : 0.06	h : 0.04	g : 0.04	w : 0.02	4 : 0.02	= : 0.02	i : 0.02	
] : 0.25	d : 0.17	e : 0.17	f : 0.10	h : 0.06	g : 0.06	c : 0.04	4 : 0.04	w : 0.02	= : 0.02	2 : 0.02	i : 0.02	
d : 0.19	e : 0.19	g : 0.12	f : 0.10	b : 0.08	h : 0.06	c : 0.04	4 : 0.04	= : 0.04	i : 0.04	3 : 0.02	a : 0.02	2 : 0.02	

#score	531.1295479706615
#seq	47
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_transcript_m1_run1.txt

#BEAR
::eeeeeuuuuuuuuuuuueeeee	chr11:126133428-126133682(-)$1	254	113	137	21.0864
ffff[bbtttttttttttbb]fff	chr2:21225279-21225502(-)$1	223	89	113	21.5562
eeeeewwwwwwwwwwwwwweeeee	chr16:69726972-69727226(+)$1	254	115	139	21.8524
#ddddvvvvvvvvvvvvvdddd33	chr9:99113305-99113543(-)$1	238	100	124	22.2114
d[a[ccctttttttttttccc22a	chr20:4833418-4833794(-)$1	376	112	136	22.6575
gggddddwwwwwwwwwwwwwwddd	chr12:9258833-9259038(-)$1	205	33	57	20.4949
ggggggwwwwwwwwwwwwwwgggg	chr2:21224418-21224639(-)$1	221	45	69	21.6817
ccc[cccuuuuuuuuuuuuccc]c	chr13:96445459-96445701(+)$1	242	163	187	23.2985
ddd!!bbwwwwwwwwwwwwwwbb]	chr22:31373688-31373960(+)$1	272	2	26	20.0829
===[ccctttttttttttccc]==	chr2:109379592-109379835(+)$1	243	119	143	23.2138
cccyyyyyyyyyyyyyyyyccc]e	chr10:81072555-81072821(+)$1	266	165	189	20.9440
ccc[awwwwwwwwwwwwwwa]ccc	chr16:89555496-89555732(-)$1	236	173	197	21.6025
ggggggyyyyyyyyyyyyyyyygg	chr3:52028034-52028242(-)$1	208	75	99	20.7315
hhhh[bbuuuuuuuuuuuubb22h	chr7:157612984-157613255(-)$1	271	223	247	21.1859
ddddwwwwwwwwwwwwwwdddd]c	chr2:21235219-21235445(-)$1	226	61	85	20.6066
c"""cccuuuuuuuuuuuuccccc	chr17:4638441-4638690(-)$1	249	151	175	22.8869
!bb[ccctttttttttttcccbb]	chr17:17697168-17697461(+)$1	293	250	274	22.2890
!ddddvvvvvvvvvvvvvdddd22	chr16:81659900-81660150(+)$1	250	212	236	22.0134
cc[ddddtttttttttttdddd]c	chr16:57286277-57286608(+)$1	331	2	26	22.6859
iiiiiiitttttttttttiiiiii	chr3:141162108-141162335(+)$1	227	157	181	22.3897
c!!dddduuuuuuuuuuuudddd2	chr10:28897134-28897387(+)$1	253	88	112	22.8461
gggggguuuuuuuuuuuugggggg	chr5:179157404-179157705(+)$1	301	47	71	22.7558
ggggggguuuuuuuuuuuuggggg	chr2:216236924-216237145(-)$1	221	22	46	22.9650
eeeeevvvvvvvvvvvvveeeeec	chr2:21239230-21239431(-)$1	201	75	99	22.3105
deeeeeuuuuuuuuuuuueeeee]	chr12:46582560-46582833(-)$1	273	157	181	22.9671
ee!!cccvvvvvvvvvvvvvccc2	chr10:81072980-81073215(+)$1	235	32	56	22.3249
ggggggwwwwwwwwwwwwwwgggg	chr2:216279483-216279756(-)$1	273	201	225	21.6817
ffffffuuuuuuuuuuuuffffff	chr17:56423300-56423551(-)$1	251	2	26	21.6010
ffffffwwwwwwwwwwwwwwffff	chr11:102272306-102272523(-)$1	217	9	33	20.5941
!eeeeeuuuuuuuuuuuueeeee2	chr3:52559123-52559343(-)$1	220	13	37	22.9759
eeeeewwwwwwwwwwwwwweeeee	chr12:122247883-122248132(+)$1	249	149	173	21.8524
eeeeewwwwwwwwwwwwwweeeee	chr18:29126741-29126993(+)$1	252	75	99	21.8524
gggggggtttttttttttgggggg	chr5:133474557-133474831(+)$1	274	77	101	22.6078
#fffffftttttttttttffffff	chr2:21234495-21234700(-)$1	205	116	140	21.5082
[bb[bbuuuuuuuuuuuubb]bb]	chr7:139281386-139281647(-)$1	261	157	181	21.2823
""eeeeettttttttttteeeee]	chr2:21229881-21230100(-)$1	219	138	162	22.8522
""eeeeettttttttttteeeee3	chr4:73957659-73957908(-)$1	249	23	47	22.8656
ddddddduuuuuuuuuuuudddd:	chr2:21228677-21228892(-)$1	215	90	114	21.6755
eee!!bbuuuuuuuuuuuubb22e	chr7:139416436-139416727(-)$1	291	262	286	22.1141
dd:ddddvvvvvvvvvvvvvdddd	chr14:89625083-89625366(-)$1	283	202	226	20.7123
dddddddtttttttttttdddd22	chr22:21141699-21141924(+)$1	225	23	47	22.3031
::eeeeettttttttttteeeee:	chr1:173930910-173931205(-)$1	295	175	199	19.9608
=======uuuuuuuuuuuu=====	chr12:57593559-57593790(+)$1	231	64	88	23.3146
gggggggtttttttttttgggggg	chr7:103131052-103131275(-)$1	223	166	190	22.6078
ddddyyyyyyyyyyyyyyyydddd	chr14:94849266-94849472(-)$1	206	24	48	20.7197
eeeeewwwwwwwwwwwwwweeeee	chr4:187509970-187510218(-)$1	248	198	222	21.8524
fffffvvvvvvvvvvvvvffffff	chr20:391058-391365(+)$1	307	142	166	21.1247
cccyyyyyyyyyyyyyyyyccc]b	chr14:77254047-77254305(-)$1	258	85	109	20.6751
eeee[bbtttttttttttbb]eee	chr6:75965643-75965895(-)$1	252	116	140	22.2810
a!!cccuuuuuuuuuuuuccc22a	chr2:171822330-171822581(+)$1	251	192	216	22.6354
!bbdddduuuuuuuuuuuudddd]	chr6:163984419-163984699(+)$1	280	161	185	22.5090
=======uuuuuuuuuuuu=====	chr1:109642815-109643021(+)$1	206	112	136	23.3146
))))ccctttttttttttccc888	chr3:100467002-100467260(+)$1	258	141	165	19.6321
dddbbyyyyyyyyyyyyyyyybb]	chr2:69746089-69746354(-)$1	265	82	106	19.8956
cc[ddddtttttttttttdddd]c	chr3:194174886-194175203(-)$1	317	30	54	22.6859
ccbb[bbtttttttttttbbbb]c	chr2:237032669-237032923(+)$1	254	39	63	21.2634
dd[ddddtttttttttttdddddd	chr22:38621368-38621651(-)$1	283	144	168	22.2266
gggggggtttttttttttgggggg	chr2:20193200-20193483(-)$1	283	234	258	22.6078
eeeeevvvvvvvvvvvvveeeee2	chr10:119043251-119043477(-)$1	226	15	39	22.3301
eeeeewwwwwwwwwwwwwweeeee	chr1:8072580-8072835(-)$1	255	153	177	21.8524
+++ddddtttttttttttdddd>>	chr5:52387296-52387553(+)$1	257	157	181	20.2662
ggeeeeevvvvvvvvvvvvveeee	chr1:230415236-230415482(+)$1	246	39	63	22.2384

#otherMatches

#Seq PSSM
UCAGGCACCCCCUUCACUCUGCCU	chr11:126133428-126133682(-)$1	254	113	137	21.0864
AGGUGCUACGUAAUCUUCAGGACC	chr2:21225279-21225502(-)$1	223	89	113	21.5562
UCAGACUUCUACAACCUCCUCUGA	chr16:69726972-69727226(+)$1	254	115	139	21.8524
UCACUCAACAUCAUCCUCAGUGUC	chr9:99113305-99113543(-)$1	238	100	124	22.2114
GACUAGGACAUCGACCACCCUCUG	chr20:4833418-4833794(-)$1	376	112	136	22.6575
AGGUGAUAGAAUUUUAGAGACAUC	chr12:9258833-9259038(-)$1	205	33	57	20.4949
AAAGAAAUCUUCAUUUAUUCUUCU	chr2:21224418-21224639(-)$1	221	45	69	21.6817
GGGUGUGUAAAGAGAUAGUCAUUC	chr13:96445459-96445701(+)$1	242	163	187	23.2985
UGCCUGCCUUUUUCACAUGUUGCU	chr22:31373688-31373960(+)$1	272	2	26	20.0829
AUAGGCUUCCACCCCAACAGCAUA	chr2:109379592-109379835(+)$1	243	119	143	23.2138
GUCCCACCUCCACACCCUUGGCUU	chr10:81072555-81072821(+)$1	266	165	189	20.9440
CUUGUGUUUGUGUUAUUUGGGAAG	chr16:89555496-89555732(-)$1	236	173	197	21.6025
CACCUGUACCUUUCCUGCUUUUCA	chr3:52028034-52028242(-)$1	208	75	99	20.7315
augugacuguguugugugugugaa	chr7:157612984-157613255(-)$1	271	223	247	21.1859
ACUAAUAUUCGAUGCAUCUAGUUC	chr2:21235219-21235445(-)$1	226	61	85	20.6066
AGAAGCAGCCGGAAAAAAAUGCUG	chr17:4638441-4638690(-)$1	249	151	175	22.8869
UCACUGACCACAGCCACUUCAUGC	chr17:17697168-17697461(+)$1	293	250	274	22.2890
AGCAuguguguguguggugugugg	chr16:81659900-81660150(+)$1	250	212	236	22.0134
AUGUAACUCUUCAUUUAUGUUAAG	chr16:57286277-57286608(+)$1	331	2	26	22.6859
UGCUGUUCCAAAGCCUUUGACAGC	chr3:141162108-141162335(+)$1	227	157	181	22.3897
UCCCUGUUUCUCCUGUUCCACAGU	chr10:28897134-28897387(+)$1	253	88	112	22.8461
GACCUGAAAAUAUGUCUGCAGGUU	chr5:179157404-179157705(+)$1	301	47	71	22.7558
UUUGGCUCUAACCUCUCUCGGCUA	chr2:216236924-216237145(-)$1	221	22	46	22.9650
UUCAGAACAAGAAAAUUACUGAGG	chr2:21239230-21239431(-)$1	201	75	99	22.3105
UUUUGCAAGUUUACAGAAGCAAAC	chr12:46582560-46582833(-)$1	273	157	181	22.9671
GGCAGUGAGACCAGCCCACCCACC	chr10:81072980-81073215(+)$1	235	32	56	22.3249
GUAUCCCACCCAGAAACCUUGGAU	chr2:216279483-216279756(-)$1	273	201	225	21.6817
GUUCUGGAACUAAAUGAACAGAAC	chr17:56423300-56423551(-)$1	251	2	26	21.6010
GUUCUUAACACAGAAAAUCAGAGA	chr11:102272306-102272523(-)$1	217	9	33	20.5941
AUUCCCCUCCUCUCCCUAGGGAAA	chr3:52559123-52559343(-)$1	220	13	37	22.9759
GUCUGCUUUCUCUCCGUAUCAGAC	chr12:122247883-122248132(+)$1	249	149	173	21.8524
AUUGAUCUUAAAAUUUUUCUCAGU	chr18:29126741-29126993(+)$1	252	75	99	21.8524
UCUGCAGUUCACAGGCCUCUGCAG	chr5:133474557-133474831(+)$1	274	77	101	22.6078
UGGGUGUCGACAGCAAAAACAUUU	chr2:21234495-21234700(-)$1	205	116	140	21.5082
AGGAGGAACAGAAACACGCCCCCA	chr7:139281386-139281647(-)$1	261	157	181	21.2823
GUGUCUCCAUUCACCAUAGAGAUG	chr2:21229881-21230100(-)$1	219	138	162	22.8522
AUCAGCACCUACCACCACUGCUGC	chr4:73957659-73957908(-)$1	249	23	47	22.8656
CCAGGUCGAGCUUUCCAAUGACCA	chr2:21228677-21228892(-)$1	215	90	114	21.6755
UGAUACCUACCAAAAAUGUGGACU	chr7:139416436-139416727(-)$1	291	262	286	22.1141
AACCGUGAACACAUCAACACCACG	chr14:89625083-89625366(-)$1	283	202	226	20.7123
ucaucugaauaccaagcacagaaa	chr22:21141699-21141924(+)$1	225	23	47	22.3031
CCGUCUUACACAAGAGAAGAGAUA	chr1:173930910-173931205(-)$1	295	175	199	19.9608
AAAUGUCACCAUAUUUCACGACGU	chr12:57593559-57593790(+)$1	231	64	88	23.3146
UUGCAAAUUAAGGUAAACUUUGUG	chr7:103131052-103131275(-)$1	223	166	190	22.6078
GAUCACCCAACCUUCAACAAGAUC	chr14:94849266-94849472(-)$1	206	24	48	20.7197
UGUCUGAACCUCAAACAAAAGGCA	chr4:187509970-187510218(-)$1	248	198	222	21.8524
aacugauucccacagcuacaguuc	chr20:391058-391365(+)$1	307	142	166	21.1247
GCAUGCCUUAAUCUUUCAUUGCUG	chr14:77254047-77254305(-)$1	258	85	109	20.6751
AGGCCAGUCCUAUUCAACCUAGCU	chr6:75965643-75965895(-)$1	252	116	140	22.2810
GACGCCCCCCACUGCCAAGGCCCC	chr2:171822330-171822581(+)$1	251	192	216	22.6354
UCAGACAAAUACAGACCGCUGUCA	chr6:163984419-163984699(+)$1	280	161	185	22.5090
GCGCUUGGAGCGUGUUAGGCGAGU	chr1:109642815-109643021(+)$1	206	112	136	23.3146
UCCUGCACAAACUUACACUGCCCA	chr3:100467002-100467260(+)$1	258	141	165	19.6321
GGCUCCUCCCACUCCACAGCAGAC	chr2:69746089-69746354(-)$1	265	82	106	19.8956
UGUAUGGUCAUUAAUACCUCAUUC	chr3:194174886-194175203(-)$1	317	30	54	22.6859
GUCCAGGAGAAACAAUAACCGGAA	chr2:237032669-237032923(+)$1	254	39	63	21.2634
GGAGCUGCUCAGCCCCUACAGCCC	chr22:38621368-38621651(-)$1	283	144	168	22.2266
aaagggacaauccaaCUAUCCCUU	chr2:20193200-20193483(-)$1	283	234	258	22.6078
GUCAAUAAAACAACAGGUUUGACA	chr10:119043251-119043477(-)$1	226	15	39	22.3301
AGGUUAAAAAUCAUACCAAGGCCU	chr1:8072580-8072835(-)$1	255	153	177	21.8524
CUCCUUUACCCCUCAUCCAAAGUU	chr5:52387296-52387553(+)$1	257	157	181	20.2662
AUGUUUCUUAAACUUUCCGCGAAA	chr1:230415236-230415482(+)$1	246	39	63	22.2384

#DB
..(((((............)))))	chr11:126133428-126133682(-)$1	1	113	137	21.0864
((((.((...........)).)))	chr2:21225279-21225502(-)$1	1	89	113	21.5562
(((((..............)))))	chr16:69726972-69727226(+)$1	1	115	139	21.8524
.((((.............))))..	chr9:99113305-99113543(-)$1	1	100	124	22.2114
(.(.(((...........)))..)	chr20:4833418-4833794(-)$1	1	112	136	22.6575
(((((((..............)))	chr12:9258833-9259038(-)$1	1	33	57	20.4949
((((((..............))))	chr2:21224418-21224639(-)$1	1	45	69	21.6817
(((.(((............))).)	chr13:96445459-96445701(+)$1	1	163	187	23.2985
(((..((..............)).	chr22:31373688-31373960(+)$1	1	2	26	20.0829
(((.(((...........))).))	chr2:109379592-109379835(+)$1	1	119	143	23.2138
(((................))).)	chr10:81072555-81072821(+)$1	1	165	189	20.9440
(((.(..............).)))	chr16:89555496-89555732(-)$1	1	173	197	21.6025
((((((................))	chr3:52028034-52028242(-)$1	1	75	99	20.7315
((((.((............))..)	chr7:157612984-157613255(-)$1	1	223	247	21.1859
((((..............)))).)	chr2:21235219-21235445(-)$1	1	61	85	20.6066
(...(((............)))))	chr17:4638441-4638690(-)$1	1	151	175	22.8869
.((.(((...........))))).	chr17:17697168-17697461(+)$1	1	250	274	22.2890
.((((.............))))..	chr16:81659900-81660150(+)$1	1	212	236	22.0134
((.((((...........)))).)	chr16:57286277-57286608(+)$1	1	2	26	22.6859
(((((((...........))))))	chr3:141162108-141162335(+)$1	1	157	181	22.3897
(..((((............)))).	chr10:28897134-28897387(+)$1	1	88	112	22.8461
((((((............))))))	chr5:179157404-179157705(+)$1	1	47	71	22.7558
(((((((............)))))	chr2:216236924-216237145(-)$1	1	22	46	22.9650
(((((.............))))))	chr2:21239230-21239431(-)$1	1	75	99	22.3105
((((((............))))).	chr12:46582560-46582833(-)$1	1	157	181	22.9671
((..(((.............))).	chr10:81072980-81073215(+)$1	1	32	56	22.3249
((((((..............))))	chr2:216279483-216279756(-)$1	1	201	225	21.6817
((((((............))))))	chr17:56423300-56423551(-)$1	1	2	26	21.6010
((((((..............))))	chr11:102272306-102272523(-)$1	1	9	33	20.5941
.(((((............))))).	chr3:52559123-52559343(-)$1	1	13	37	22.9759
(((((..............)))))	chr12:122247883-122248132(+)$1	1	149	173	21.8524
(((((..............)))))	chr18:29126741-29126993(+)$1	1	75	99	21.8524
(((((((...........))))))	chr5:133474557-133474831(+)$1	1	77	101	22.6078
.((((((...........))))))	chr2:21234495-21234700(-)$1	1	116	140	21.5082
.((.((............)).)).	chr7:139281386-139281647(-)$1	1	157	181	21.2823
..(((((...........))))).	chr2:21229881-21230100(-)$1	1	138	162	22.8522
..(((((...........))))).	chr4:73957659-73957908(-)$1	1	23	47	22.8656
)))((((............)))).	chr2:21228677-21228892(-)$1	1	90	114	21.6755
(((..((............))..)	chr7:139416436-139416727(-)$1	1	262	286	22.1141
)).((((.............))))	chr14:89625083-89625366(-)$1	1	202	226	20.7123
(((((((...........))))..	chr22:21141699-21141924(+)$1	1	23	47	22.3031
..(((((...........))))).	chr1:173930910-173931205(-)$1	1	175	199	19.9608
(((((((............)))))	chr12:57593559-57593790(+)$1	1	64	88	23.3146
(((((((...........))))))	chr7:103131052-103131275(-)$1	1	166	190	22.6078
((((................))))	chr14:94849266-94849472(-)$1	1	24	48	20.7197
(((((..............)))))	chr4:187509970-187510218(-)$1	1	198	222	21.8524
(((((.............))))))	chr20:391058-391365(+)$1	1	142	166	21.1247
(((................))).)	chr14:77254047-77254305(-)$1	1	85	109	20.6751
((((.((...........)).)))	chr6:75965643-75965895(-)$1	1	116	140	22.2810
(..(((............)))..)	chr2:171822330-171822581(+)$1	1	192	216	22.6354
.((((((............)))).	chr6:163984419-163984699(+)$1	1	161	185	22.5090
(((((((............)))))	chr1:109642815-109643021(+)$1	1	112	136	23.3146
....(((...........)))...	chr3:100467002-100467260(+)$1	1	141	165	19.6321
(((((................)).	chr2:69746089-69746354(-)$1	1	82	106	19.8956
((.((((...........)))).)	chr3:194174886-194175203(-)$1	1	30	54	22.6859
((((.((...........)))).)	chr2:237032669-237032923(+)$1	1	39	63	21.2634
((.((((...........))))))	chr22:38621368-38621651(-)$1	1	144	168	22.2266
(((((((...........))))))	chr2:20193200-20193483(-)$1	1	234	258	22.6078
(((((.............))))).	chr10:119043251-119043477(-)$1	1	15	39	22.3301
(((((..............)))))	chr1:8072580-8072835(-)$1	1	153	177	21.8524
...((((...........))))..	chr5:52387296-52387553(+)$1	1	157	181	20.2662
))(((((.............))))	chr1:230415236-230415482(+)$1	1	39	63	22.2384

#PSSM
e : 0.16	d : 0.16	g : 0.16	c : 0.14	f : 0.06	! : 0.06	= : 0.04	: : 0.03	# : 0.03	" : 0.03	h : 0.01	i : 0.01	[ : 0.01	a : 0.01	) : 0.01	+ : 0.01	
e : 0.19	d : 0.16	g : 0.16	c : 0.11	f : 0.08	= : 0.04	" : 0.04	b : 0.04	: : 0.03	! : 0.03	[ : 0.01	h : 0.01	i : 0.01	) : 0.01	+ : 0.01	
e : 0.25	g : 0.14	d : 0.12	f : 0.08	c : 0.06	b : 0.06	= : 0.04	[ : 0.04	! : 0.04	a : 0.01	h : 0.01	" : 0.01	i : 0.01	: : 0.01	) : 0.01	+ : 0.01	
e : 0.24	d : 0.22	g : 0.12	[ : 0.09	f : 0.08	! : 0.04	y : 0.03	= : 0.03	b : 0.03	h : 0.01	" : 0.01	i : 0.01	c : 0.01	) : 0.01	
e : 0.22	d : 0.19	c : 0.12	g : 0.12	[ : 0.06	f : 0.06	y : 0.04	! : 0.03	b : 0.03	= : 0.03	a : 0.01	w : 0.01	i : 0.01	
d : 0.16	c : 0.12	g : 0.12	e : 0.11	b : 0.11	w : 0.11	v : 0.08	y : 0.06	f : 0.04	= : 0.03	i : 0.01	
w : 0.16	d : 0.16	c : 0.11	b : 0.09	u : 0.09	e : 0.08	v : 0.08	y : 0.08	g : 0.06	= : 0.03	i : 0.01	f : 0.01	
t : 0.32	u : 0.27	w : 0.19	v : 0.12	y : 0.08	
t : 0.32	u : 0.27	w : 0.19	v : 0.12	y : 0.08	
t : 0.32	u : 0.27	w : 0.19	v : 0.12	y : 0.08	
t : 0.32	u : 0.27	w : 0.19	v : 0.12	y : 0.08	
t : 0.32	u : 0.27	w : 0.19	v : 0.12	y : 0.08	
t : 0.32	u : 0.27	w : 0.19	v : 0.12	y : 0.08	
t : 0.32	u : 0.27	w : 0.19	v : 0.12	y : 0.08	
t : 0.32	u : 0.27	w : 0.19	v : 0.12	y : 0.08	
t : 0.32	u : 0.27	w : 0.19	v : 0.12	y : 0.08	
t : 0.32	u : 0.27	w : 0.19	v : 0.12	y : 0.08	
t : 0.32	u : 0.27	w : 0.19	v : 0.12	y : 0.08	
u : 0.17	w : 0.17	d : 0.12	e : 0.11	c : 0.08	y : 0.08	b : 0.06	g : 0.06	v : 0.04	f : 0.04	i : 0.01	
e : 0.20	d : 0.17	c : 0.14	b : 0.09	w : 0.08	g : 0.08	y : 0.04	v : 0.04	f : 0.04	= : 0.03	a : 0.01	i : 0.01	
e : 0.22	d : 0.20	c : 0.16	g : 0.11	] : 0.06	f : 0.06	b : 0.04	w : 0.03	y : 0.03	= : 0.03	i : 0.01	
e : 0.24	d : 0.22	g : 0.11	c : 0.09	f : 0.08	b : 0.08	2 : 0.06	= : 0.03	] : 0.01	y : 0.01	i : 0.01	8 : 0.01	
e : 0.24	g : 0.12	d : 0.11	] : 0.11	2 : 0.09	f : 0.08	b : 0.06	= : 0.04	c : 0.04	3 : 0.01	i : 0.01	8 : 0.01	> : 0.01	
e : 0.16	g : 0.12	c : 0.12	] : 0.11	2 : 0.09	f : 0.08	d : 0.06	= : 0.04	3 : 0.03	a : 0.03	: : 0.03	h : 0.01	i : 0.01	b : 0.01	8 : 0.01	> : 0.01	

#score	1356.1162361208105
#seq	62
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_UTR_m3_run1.txt

#BEAR
ggggggg!!ddddqqqqqqqqdddd]gggg	chr10:104209487-104209737(+)$1	250	130	160	9.6853
eeeeffffffbbrrrrrrrrrbb]ffffff	chr12:133348986-133349236(-)$1	250	138	168	13.7425
eeeee[bb[cccqqqqqqqqccc]bb]eee	chr22:38879928-38880145(-)$1	217	2	32	10.3853
ggg!!ffffff[apppppppa]ffffff22	chr11:9303752-9303983(-)$1	231	92	122	13.3841
eeggggggg!!bbpppppppbb]ggggggg	chr3:10142982-10143239(+)$1	257	137	167	15.3571
""==========cccnnnnnccc]======	chr4:166263423-166263637(+)$1	214	111	141	8.9652
dddd####cccrrrrrrrrrcccdddd]ff	chr3:113528817-113529043(+)$1	226	122	152	12.6640
"""bb[eeeeerrrrrrrrreeeeebbccc	chr6:150047394-150047638(-)$1	244	152	182	10.6953
"""gggggggbbqqqqqqqqbb4444gggg	chr7:100278770-100279029(-)$1	259	172	202	11.4436
GGeeeee"""cccpppppppccc333eeee	chr6:143510080-143510359(+)$1	279	191	221	13.2391
ee[dddd[eeeeerrrrrrrrreeeeeddd	chr17:74731367-74731584(-)$1	217	39	69	10.6531
gggggg!!cccrrrrrrrrrccc333gggg	chr6:109688912-109689217(-)$1	305	154	184	15.2958
::iiiiiiiiirrrrrrrrriiiiiiiii:	chr11:47490095-47490359(-)$1	264	212	242	11.8217
gggggggggg[bbpppppppbbggggggg2	chr1:21070008-21070230(-)$1	222	109	139	15.5964
c[iiiiiiiiibbpppppppbb]iiiiiii	chr11:117039438-117039691(+)$1	253	98	128	15.1433
f[ffffff[cccqqqqqqqqccc]ffffff	chr3:197401578-197401831(-)$1	253	88	118	10.9071
bb[ggggggg[aqqqqqqqqa]ggggggg]	chr6:24719184-24719440(-)$1	256	185	215	11.5201
fff:gggggggbbqqqqqqqqbb]gggggg	chr11:65180375-65180662(+)$1	287	141	171	10.5108
dddgggggggbbrrrrrrrrrbb]gggggg	chr12:54627821-54628070(-)$1	249	139	169	15.2298
eeeggggggg[bbpppppppbbggggggg]	chr6:7287010-7287257(-)$1	247	145	175	15.6864
ccciiiiiiiiiqqqqqqqqiiiiiiiii]	chr3:9848116-9848363(+)$1	247	134	164	11.4192
cc"""ccc[cccqqqqqqqqccc]ccc333	chr19:2233577-2233852(-)$1	275	54	84	11.5888
dddd####cccrrrrrrrrrcccdddd]ff	chr3:113528796-113529017(+)$1	221	143	173	12.6640
ccbb[ccccccrrrrrrrrrccc]ccc]bb	chr17:30701149-30701411(+)$1	262	137	167	13.5672
hhhhhhh[ccc[arrrrrrrrra]ccc]hh	chr5:133707144-133707375(+)$1	231	162	192	12.9114
dddgggggggcccpppppppccc]gggggg	chr1:162494579-162494843(+)$1	264	154	184	15.9086
:::==========ppppppp==========	chr8:26268722-26268978(+)$1	256	195	225	12.4893
eeeggggggg[bbpppppppbbggggggg2	chr5:36183280-36183537(+)$1	257	138	168	15.5859
ggg!!ffffff[apppppppa]ffffff22	chr11:9303783-9304021(-)$1	238	130	160	13.3841
eeeffffff[cccpppppppcccffffff]	chr1:6582805-6583048(-)$1	243	137	167	14.1306
eeeeccc[bbcccpppppppccc]bb]ccc	chr17:29222346-29222618(+)$1	272	125	155	13.9989
::eeeee[cccrrrrrrrrrccc]eeeee:	chr19:5205790-5206106(-)$1	316	177	207	11.6419
dddgggggggbb[aooooooabb]gggggg	chr17:40732902-40733161(-)$1	259	136	166	10.6231
5cccccc[cccrrrrrrrrrccc]ccc:::	chr19:34891857-34892119(+)$1	262	49	79	10.4770
eeee$$$$$bbrrrrrrrrrbb4444eeee	chr19:18390711-18390967(-)$1	256	1	31	11.8078
f[eeeee[eeeeepppppppeeeee]eeee	chr1:33145904-33146144(+)$1	240	192	222	12.0723
g[bbffffffbbrrrrrrrrrbb]ffffff	chr9:123522757-123523023(-)$1	266	149	179	13.2468
[eeeeeccc[cccpppppppcccccc4444	chr1:32636776-32637000(+)$1	224	135	165	13.8784
eeegggggggcccpppppppccc]gggggg	chr19:33203201-33203465(+)$1	264	146	176	16.2787
bbbgggggggbbrrrrrrrrrbb]gggggg	chr6:33269245-33269498(-)$1	253	179	209	14.8194
[eeeeeccc[cccpppppppcccccc4444	chr1:32636744-32636976(+)$1	232	167	197	13.8784
bbbgggggggbbrrrrrrrrrbb]gggggg	chr6:33269208-33269445(-)$1	237	126	156	14.8194
ffff[eeeeebbrrrrrrrrrbb]eeeee2	chr2:173461747-173461993(+)$1	246	136	166	13.2852
eee!!eeeee[bbpppppppbb]eeeeeee	chr3:152881388-152881617(+)$1	229	102	132	13.3521
gggggggggg[bbpppppppbbggggggg2	chr1:21070044-21070260(-)$1	216	139	169	15.5964
gggg[ccc[bbcccooooooccc]bb]ccc	chr1:113212896-113213163(+)$1	267	188	218	9.1992
hhhhhhh[ccc[arrrrrrrrra]ccc]hh	chr5:133707175-133707418(+)$1	243	131	161	12.9114
dd[dddd[cccrrrrrrrrrccc]dddddd	chr4:77996929-77997146(-)$1	217	162	192	12.8391
gggggggggg[bbpppppppbbggggggg2	chr1:21070030-21070244(-)$1	214	123	153	15.5964

#otherMatches

#Seq PSSM
gccuaggcuggucuccaaccuggucuccug	chr10:104209487-104209737(+)$1	250	130	160	9.6853
gagugcaguggcacacucuccgcucacugc	chr12:133348986-133349236(-)$1	250	138	168	13.7425
AAGCACUGGCCAGUCUGUUGUGGGCAUUGU	chr22:38879928-38880145(-)$1	217	2	32	10.3853
agugcguggugugaucucggcucacugcaa	chr11:9303752-9303983(-)$1	231	92	122	13.3841
agugcagugcugcaaucuuggcucacugca	chr3:10142982-10143239(+)$1	257	137	167	15.3571
aagccacacucugucuccuuggcuggagug	chr4:166263423-166263637(+)$1	214	111	141	8.9652
agugcaauggcgugaucuuggcucacugca	chr3:113528817-113529043(+)$1	226	122	152	12.6640
cacugcaaccuccaccucccagguucaagc	chr6:150047394-150047638(-)$1	244	152	182	10.6953
UACUUACCCCCCAGAAGGCGGGCCAUGGGG	chr7:100278770-100279029(-)$1	259	172	202	11.4436
cagggcucaagcaauccuccugccucagcc	chr6:143510080-143510359(+)$1	279	191	221	13.2391
UAUAGACCAAUUCUCUGAUCUCGAGUUGUU	chr17:74731367-74731584(-)$1	217	39	69	10.6531
ACCAGACUGUCUUGAGUAGUGACUUCUUUG	chr6:109688912-109689217(-)$1	305	154	184	15.2958
CUUCAUAAGAUAACCACUUGAUUUUGUGAU	chr11:47490095-47490359(-)$1	264	212	242	11.8217
agugcaguggugugaucuuggcucacugca	chr1:21070008-21070230(-)$1	222	109	139	15.5964
uucacuguugcccaggcuggggugcaaugg	chr11:117039438-117039691(+)$1	253	98	128	15.1433
GUCUGACGUCUGUGUGCAGUCAGCCGUCGG	chr3:197401578-197401831(-)$1	253	88	118	10.9071
UAUAGGCUUUUCAUUUCUCCGCAAAGCCUU	chr6:24719184-24719440(-)$1	256	185	215	11.5201
ggagugcaguggcgcaucucggcucacugc	chr11:65180375-65180662(+)$1	287	141	171	10.5108
gagugcaguggcgugaucuuggcucacugc	chr12:54627821-54628070(-)$1	249	139	169	15.2298
agugcaguggugcgaucucggcucacugca	chr6:7287010-7287257(-)$1	247	145	175	15.6864
UCCCAGUGAUUAUACGUUAUUGGUUGCUGU	chr3:9848116-9848363(+)$1	247	134	164	11.4192
GCCCUGCCCAGCCAUGAAUCGCUUGGCCAU	chr19:2233577-2233852(-)$1	275	54	84	11.5888
agugcaauggcgugaucuuggcucacugca	chr3:113528796-113529017(+)$1	221	143	173	12.6640
agugcaguagcacgaucucagcucacuaca	chr17:30701149-30701411(+)$1	262	137	167	13.5672
GAGGCUCAUGCGGGAUUUCAAGCGGUAAGG	chr5:133707144-133707375(+)$1	231	162	192	12.9114
gagugcaguggcucaaucucggcucacugc	chr1:162494579-162494843(+)$1	264	154	184	15.9086
UUAAACUCUGAAGAGAAUUGUUUCAGAGUU	chr8:26268722-26268978(+)$1	256	195	225	12.4893
agugcaguggugcgaucucggcucacugca	chr5:36183280-36183537(+)$1	257	138	168	15.5859
agugcguggugugaucucggcucacugcaa	chr11:9303783-9304021(-)$1	238	130	160	13.3841
ggugcaguggagugaucucggcucacugca	chr1:6582805-6583048(-)$1	243	137	167	14.1306
gagugcaguggccugguaucggcucagugc	chr17:29222346-29222618(+)$1	272	125	155	13.9989
AGGUCAUGGGGGAGCUCGGACCCAGUGGCG	chr19:5205790-5206106(-)$1	316	177	207	11.6419
gagugcaguggcacaaucucggcucacugc	chr17:40732902-40733161(-)$1	259	136	166	10.6231
agguaugagccaccacgcccggccCAuuuu	chr19:34891857-34892119(+)$1	262	49	79	10.4770
CGCGUCUCGGCUGCCCCUUUGUACACCGCG	chr19:18390711-18390967(-)$1	256	1	31	11.8078
UCCUUGAUAAGAGUUGCUUUUUUUUUUUAG	chr1:33145904-33146144(+)$1	240	192	222	12.0723
gagugcaguggcgugaucucggcuuacugc	chr9:123522757-123523023(-)$1	266	149	179	13.2468
AUCUGUGUAACUCUUAUCUUGGGUACUUGA	chr1:32636776-32637000(+)$1	224	135	165	13.8784
gagugcaguggcccaaucucggcucacugc	chr19:33203201-33203465(+)$1	264	146	176	16.2787
cagugcaguggcaugaucuuggcuuacugc	chr6:33269245-33269498(-)$1	253	179	209	14.8194
AUCUGUGUAACUCUUAUCUUGGGUACUUGA	chr1:32636744-32636976(+)$1	232	167	197	13.8784
cagugcaguggcaugaucuuggcuuacugc	chr6:33269208-33269445(-)$1	237	126	156	14.8194
gaguacaguggcauggucaaggcucacugc	chr2:173461747-173461993(+)$1	246	136	166	13.2852
UCUAGUUCCAAGUUUUAAAUACAUGGAAGG	chr3:152881388-152881617(+)$1	229	102	132	13.3521
agugcaguggugugaucuuggcucacugca	chr1:21070044-21070260(-)$1	216	139	169	15.5964
AUGAAGCCCUGCUACUGAUUUAGACAAGGU	chr1:113212896-113213163(+)$1	267	188	218	9.1992
GAGGCUCAUGCGGGAUUUCAAGCGGUAAGG	chr5:133707175-133707418(+)$1	243	131	161	12.9114
GGCAGAGCCGGUCUCACCCCCCGCCUCUCC	chr4:77996929-77997146(-)$1	217	162	192	12.8391
agugcaguggugugaucuuggcucacugca	chr1:21070030-21070244(-)$1	214	123	153	15.5964

#DB
(((((((..((((........)))).))))	chr10:104209487-104209737(+)$1	1	130	160	9.6853
((((((((((((.........)).))))))	chr12:133348986-133349236(-)$1	1	138	168	13.7425
(((((.((.(((........))).)).)))	chr22:38879928-38880145(-)$1	1	2	32	10.3853
(((..((((((.(.......).))))))..	chr11:9303752-9303983(-)$1	1	92	122	13.3841
(((((((((..((.......)).)))))))	chr3:10142982-10143239(+)$1	1	137	167	15.3571
..(((((((((((((.....))).))))))	chr4:166263423-166263637(+)$1	1	111	141	8.9652
((((....(((.........))))))).))	chr3:113528817-113529043(+)$1	1	122	152	12.6640
...((.(((((.........))))))))))	chr6:150047394-150047638(-)$1	1	152	182	10.6953
...(((((((((........))....))))	chr7:100278770-100279029(-)$1	1	172	202	11.4436
))(((((...(((.......)))...))))	chr6:143510080-143510359(+)$1	1	191	221	13.2391
((.((((.(((((.........))))))))	chr17:74731367-74731584(-)$1	1	39	69	10.6531
((((((..(((.........)))...))))	chr6:109688912-109689217(-)$1	1	154	184	15.2958
..(((((((((.........))))))))).	chr11:47490095-47490359(-)$1	1	212	242	11.8217
((((((((((.((.......))))))))).	chr1:21070008-21070230(-)$1	1	109	139	15.5964
(.(((((((((((.......)).)))))))	chr11:117039438-117039691(+)$1	1	98	128	15.1433
(.((((((.(((........))).))))))	chr3:197401578-197401831(-)$1	1	88	118	10.9071
((.(((((((.(........).))))))).	chr6:24719184-24719440(-)$1	1	185	215	11.5201
))).(((((((((........)).))))))	chr11:65180375-65180662(+)$1	1	141	171	10.5108
((((((((((((.........)).))))))	chr12:54627821-54628070(-)$1	1	139	169	15.2298
((((((((((.((.......))))))))).	chr6:7287010-7287257(-)$1	1	145	175	15.6864
((((((((((((........))))))))).	chr3:9848116-9848363(+)$1	1	134	164	11.4192
((...(((.(((........))).)))...	chr19:2233577-2233852(-)$1	1	54	84	11.5888
((((....(((.........))))))).))	chr3:113528796-113529017(+)$1	1	143	173	12.6640
((((.((((((.........))).))).))	chr17:30701149-30701411(+)$1	1	137	167	13.5672
(((((((.(((.(.........).))).))	chr5:133707144-133707375(+)$1	1	162	192	12.9114
(((((((((((((.......))).))))))	chr1:162494579-162494843(+)$1	1	154	184	15.9086
...((((((((((.......))))))))))	chr8:26268722-26268978(+)$1	1	195	225	12.4893
((((((((((.((.......))))))))).	chr5:36183280-36183537(+)$1	1	138	168	15.5859
(((..((((((.(.......).))))))..	chr11:9303783-9304021(-)$1	1	130	160	13.3841
(((((((((.(((.......))))))))).	chr1:6582805-6583048(-)$1	1	137	167	14.1306
(((((((.(((((.......))).)).)))	chr17:29222346-29222618(+)$1	1	125	155	13.9989
..(((((.(((.........))).))))).	chr19:5205790-5206106(-)$1	1	177	207	11.6419
((((((((((((.(......))).))))))	chr17:40732902-40733161(-)$1	1	136	166	10.6231
.)))(((.(((.........))).)))...	chr19:34891857-34892119(+)$1	1	49	79	10.4770
((((.....((.........))....))))	chr19:18390711-18390967(-)$1	1	1	31	11.8078
(.(((((.(((((.......))))).))))	chr1:33145904-33146144(+)$1	1	192	222	12.0723
(.((((((((((.........)).))))))	chr9:123522757-123523023(-)$1	1	149	179	13.2468
.((((((((.(((.......))))))....	chr1:32636776-32637000(+)$1	1	135	165	13.8784
(((((((((((((.......))).))))))	chr19:33203201-33203465(+)$1	1	146	176	16.2787
((((((((((((.........)).))))))	chr6:33269245-33269498(-)$1	1	179	209	14.8194
.((((((((.(((.......))))))....	chr1:32636744-32636976(+)$1	1	167	197	13.8784
((((((((((((.........)).))))))	chr6:33269208-33269445(-)$1	1	126	156	14.8194
((((.(((((((.........)).))))).	chr2:173461747-173461993(+)$1	1	136	166	13.2852
(((..(((((.((.......)).)))))))	chr3:152881388-152881617(+)$1	1	102	132	13.3521
((((((((((.((.......))))))))).	chr1:21070044-21070260(-)$1	1	139	169	15.5964
((((.(((.(((((......))).)).)))	chr1:113212896-113213163(+)$1	1	188	218	9.1992
(((((((.(((.(.........).))).))	chr5:133707175-133707418(+)$1	1	131	161	12.9114
((.((((.(((.........))).))))))	chr4:77996929-77997146(-)$1	1	162	192	12.8391
((((((((((.((.......))))))))).	chr1:21070030-21070244(-)$1	1	123	153	15.5964

#PSSM
e : 0.22	g : 0.18	d : 0.12	c : 0.08	f : 0.08	" : 0.06	: : 0.06	b : 0.06	h : 0.04	[ : 0.04	G : 0.02	5 : 0.02	
e : 0.26	g : 0.16	d : 0.12	[ : 0.08	c : 0.08	" : 0.06	: : 0.06	b : 0.06	f : 0.04	h : 0.04	G : 0.02	
e : 0.28	g : 0.18	d : 0.10	b : 0.08	" : 0.06	[ : 0.06	f : 0.06	i : 0.04	c : 0.04	h : 0.04	= : 0.02	: : 0.02	
g : 0.34	e : 0.18	d : 0.08	! : 0.06	b : 0.06	i : 0.06	f : 0.06	= : 0.04	h : 0.04	: : 0.02	" : 0.02	c : 0.02	
g : 0.34	e : 0.12	f : 0.08	! : 0.06	i : 0.06	[ : 0.06	= : 0.04	# : 0.04	d : 0.04	h : 0.04	c : 0.04	b : 0.02	" : 0.02	$ : 0.02	
g : 0.34	e : 0.14	f : 0.12	c : 0.10	i : 0.06	[ : 0.04	= : 0.04	# : 0.04	d : 0.04	h : 0.04	$ : 0.02	
g : 0.32	c : 0.14	f : 0.12	e : 0.12	i : 0.06	= : 0.04	# : 0.04	d : 0.04	h : 0.04	b : 0.02	! : 0.02	$ : 0.02	
g : 0.30	[ : 0.16	f : 0.12	c : 0.10	e : 0.06	i : 0.06	! : 0.04	= : 0.04	# : 0.04	b : 0.02	" : 0.02	$ : 0.02	
g : 0.30	c : 0.22	f : 0.10	e : 0.10	[ : 0.08	i : 0.06	= : 0.04	! : 0.02	" : 0.02	b : 0.02	$ : 0.02	
g : 0.28	c : 0.24	e : 0.10	f : 0.08	i : 0.06	[ : 0.06	b : 0.06	= : 0.04	d : 0.02	! : 0.02	" : 0.02	
c : 0.38	b : 0.20	[ : 0.14	e : 0.06	i : 0.06	f : 0.04	= : 0.04	d : 0.02	! : 0.02	g : 0.02	
b : 0.34	c : 0.22	r : 0.20	[ : 0.08	= : 0.04	e : 0.04	d : 0.02	a : 0.02	i : 0.02	
r : 0.32	b : 0.18	c : 0.18	q : 0.12	a : 0.08	e : 0.04	d : 0.02	= : 0.02	[ : 0.02	
r : 0.38	p : 0.38	q : 0.16	c : 0.04	a : 0.02	
r : 0.38	p : 0.38	q : 0.16	o : 0.04	c : 0.02	
r : 0.38	p : 0.38	q : 0.16	o : 0.04	n : 0.02	
r : 0.38	p : 0.38	q : 0.16	o : 0.04	n : 0.02	
r : 0.38	p : 0.38	q : 0.16	o : 0.04	n : 0.02	
r : 0.38	p : 0.38	q : 0.16	o : 0.04	n : 0.02	
r : 0.38	p : 0.38	q : 0.16	o : 0.04	n : 0.02	
c : 0.38	b : 0.20	r : 0.18	a : 0.08	q : 0.04	e : 0.04	i : 0.04	= : 0.02	
c : 0.38	b : 0.36	] : 0.06	r : 0.06	e : 0.04	i : 0.04	d : 0.02	= : 0.02	
c : 0.38	b : 0.16	g : 0.12	] : 0.06	e : 0.06	f : 0.04	4 : 0.04	i : 0.04	a : 0.04	d : 0.02	= : 0.02	
] : 0.44	g : 0.14	e : 0.08	d : 0.06	f : 0.06	i : 0.06	4 : 0.04	3 : 0.04	c : 0.04	= : 0.02	
g : 0.28	c : 0.14	f : 0.12	e : 0.12	d : 0.08	b : 0.06	i : 0.06	= : 0.04	4 : 0.04	3 : 0.04	
g : 0.28	c : 0.14	f : 0.12	b : 0.08	e : 0.08	d : 0.06	i : 0.06	] : 0.04	= : 0.04	4 : 0.04	3 : 0.04	
g : 0.34	e : 0.14	f : 0.12	c : 0.10	] : 0.06	d : 0.06	i : 0.06	= : 0.04	4 : 0.04	b : 0.02	
g : 0.34	e : 0.14	f : 0.12	] : 0.10	c : 0.06	i : 0.06	= : 0.04	d : 0.04	4 : 0.04	3 : 0.02	: : 0.02	
g : 0.34	e : 0.14	f : 0.12	c : 0.06	i : 0.06	2 : 0.04	= : 0.04	d : 0.04	h : 0.04	4 : 0.04	3 : 0.02	b : 0.02	: : 0.02	
g : 0.22	2 : 0.14	f : 0.10	e : 0.10	] : 0.08	c : 0.06	: : 0.06	= : 0.04	d : 0.04	h : 0.04	4 : 0.04	i : 0.02	3 : 0.02	b : 0.02	

#score	635.8993234851164
#seq	49
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF322GPD_SF3B1_UTR_m2_run2.txt

#BEAR
CC::::::dddd[dddd"""ddddmmmmdddd]ddddddd	chr11:62609060-62609293(-)$1	233	115	155	33.8517
FFF:::::dddd[dddd"""ddddmmmmdddd]ddddddd	chr11:62609093-62609309(-)$1	216	131	171	34.0786
A{EEEEE:dddd[dddd"""ddddmmmmdddd]ddddddd	chr11:62609026-62609260(-)$1	234	82	122	34.8346

#otherMatches

#Seq PSSM
uggaaauaggagauggaauaggagcuugcuccguccacuc	chr11:62609060-62609293(-)$1	233	115	155	33.8517
uggaaauaggagauggaauaggagcuugcuccguccacuc	chr11:62609093-62609309(-)$1	216	131	171	34.0786
uggaaauaggagauggaauaggagcuugcuccguccacuc	chr11:62609026-62609260(-)$1	234	82	122	34.8346

#DB
((......((((.((((...((((....)))).)))))))	chr11:62609060-62609293(-)$1	1	115	155	33.8517
))).....((((.((((...((((....)))).)))))))	chr11:62609093-62609309(-)$1	1	131	171	34.0786
(.(((((.((((.((((...((((....)))).)))))))	chr11:62609026-62609260(-)$1	1	82	122	34.8346

#PSSM
C : 0.33	F : 0.33	A : 0.33	
C : 0.33	F : 0.33	{ : 0.33	
: : 0.33	F : 0.33	E : 0.33	
: : 0.66	E : 0.33	
: : 0.66	E : 0.33	
: : 0.66	E : 0.33	
: : 0.66	E : 0.33	
: : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
[ : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
" : 1.00	
" : 1.00	
" : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
] : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	

#score	102.76508266019994
#seq	3
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_CDS_m3_run1.txt

#BEAR
fff!!cccnnnnnccc444	chr9:75782341-75782572(+)$1	231	201	220	13.2676
hhhh[cccnnnnnccc]hh	chr16:18812676-18812935(-)$1	259	46	65	12.3583
ddccc[bbnnnnnbb]ccc	chr3:64008976-64009223(-)$1	247	189	208	10.1455
%%%%%cccnnnnnccc333	chr11:831551-831796(+)$1	245	61	80	10.8326
cc"""cccnnnnnccc22c	chr1:32842131-32842383(-)$1	252	227	246	13.8408
:ccc[cccnnnnnccc]cc	chr1:151378133-151378388(-)$1	255	148	167	12.8336
d[ffffffnnnnnffffff	chr20:48600397-48600652(+)$1	255	230	249	10.4586
dddd[cccnnnnncccddd	chr21:34131344-34131575(-)$1	231	34	53	12.4960
:gggggggnnnnngggggg	chr2:70315464-70315674(+)$1	210	49	68	10.7169
hhhhhcccnnnnncccFFF	chr12:80182428-80182668(-)$1	240	181	200	10.3041
::bb[cccnnnnnccc]bb	chr7:30174748-30174985(+)$1	237	168	187	10.9976
ee!!ddddnnnnndddd]e	chr12:133338129-133338439(-)$1	310	287	306	10.6999
dddd[cccnnnnnccc]dd	chr3:48672641-48672935(-)$1	294	61	80	12.9167
[gggggggnnnnngggggg	chr22:21354603-21354842(-)$1	239	11	30	11.5430
dddd[cccnnnnncccddd	chr16:30616075-30616316(-)$1	241	219	238	12.4960
eccc[cccnnnnnccc]cc	chr11:57563924-57564234(+)$1	310	77	96	13.5284
fffffcccnnnnnccc333	chr16:30615716-30615962(-)$1	246	176	195	12.8482
dd"""cccnnnnnccc]dd	chr2:73679019-73679271(+)$1	252	47	66	13.3853
ccc!!cccnnnnnccc]cc	chr3:191075698-191075992(+)$1	294	10	29	13.7606
dddd[cccnnnnncccddd	chr2:73677014-73677255(+)$1	241	210	229	12.4960
========nnnnn======	chr1:162560014-162560276(+)$1	262	104	123	11.8816
ccc!!cccnnnnnccc22c	chr17:42225967-42226229(+)$1	262	65	84	13.8496
iiiiiiiinnnnniiiiii	chr11:9603058-9603289(+)$1	231	5	24	11.5322
[bb!!cccnnnnnccc444	chr11:68305185-68305456(+)$1	271	151	170	13.3792
f####cccnnnnnccc333	chr6:97676987-97677301(-)$1	314	102	121	13.8080
ggg[bb[annnnna]bbgg	chr6:31127258-31127513(+)$1	255	96	115	9.9508
c[bb!!bbnnnnnbb22bb	chr3:135913849-135914093(-)$1	244	198	217	9.9132
:gggggggnnnnngggggg	chr19:42777986-42778235(+)$1	249	139	158	10.7169
""bb[cccnnnnnccc22b	chr21:38538600-38538872(+)$1	272	235	254	13.0979
accc[cccnnnnnccc22c	chr8:145001619-145001867(-)$1	248	218	237	13.7041
========nnnnn======	chr19:33183371-33183614(+)$1	243	210	229	11.8816
b[ffffffnnnnnffffff	chr10:103563426-103563661(-)$1	235	169	188	10.2805
!ccc[cccnnnnncccccc	chr7:135080391-135080638(-)$1	247	207	226	13.3386
:ccc[cccnnnnnccc]cc	chr15:93540389-93540693(+)$1	304	230	249	12.8336
!!ffffffnnnnnffffff	chr10:70737302-70737530(+)$1	228	166	185	10.6071
ee[a[cccnnnnnccca]e	chr11:67018017-67018281(+)$1	264	225	244	13.1742
[bb!!cccnnnnnccc22b	chr19:18468264-18468580(+)$1	316	87	106	13.2415
!!ffffffnnnnnffffff	chr2:103335222-103335490(-)$1	268	190	209	10.6071
cc"""cccnnnnnccc22c	chr17:5485888-5486162(-)$1	274	97	116	13.8408
e"""ddddnnnnndddd]e	chr12:132593096-132593355(+)$1	259	124	143	10.8064
dd"""cccnnnnncccddd	chr6:109689991-109690259(-)$1	268	239	258	12.9645
dd[a[cccnnnnnccca]d	chr15:80215898-80216109(-)$1	211	40	59	13.3241
dddd[cccnnnnnccc]dd	chr2:160604583-160604840(+)$1	257	48	67	12.9167
!!ffffffnnnnnffffff	chr20:23350776-23351021(+)$1	245	197	216	10.6071
bb!!ddddnnnnndddd22	chr10:135098530-135098772(-)$1	242	74	93	10.4547
:gggggggnnnnngggggg	chr10:121658187-121658504(+)$1	317	232	251	10.7169
d:bb[cccnnnnnccc]bb	chr10:17686245-17686522(+)$1	277	156	175	11.7529
ff!!ddddnnnnndddd22	chr3:152554526-152554785(+)$1	259	29	48	10.5429
dddd[cccnnnnnccc333	chr17:37686909-37687147(+)$1	238	70	89	13.5894
eea[ddddnnnnndddd22	chr10:103867978-103868191(-)$1	213	187	206	10.4870

#otherMatches

#Seq PSSM
UUGUUUGAAAAUCUCACAU	chr9:75782341-75782572(+)$1	231	201	220	13.2676
CCUGCGGGGCGUUCCCUCG	chr16:18812676-18812935(-)$1	259	46	65	12.3583
AGCUGCGCUUCCUGCUCAG	chr3:64008976-64009223(-)$1	247	189	208	10.1455
GACAACAGCCCGCCUGCCU	chr11:831551-831796(+)$1	245	61	80	10.8326
AGAUCGCCAACCCGGCCAC	chr1:32842131-32842383(-)$1	252	227	246	13.8408
CACACCCUACCUAAGGAUG	chr1:151378133-151378388(-)$1	255	148	167	12.8336
CAGUCUCUUCCUUGGAGGC	chr20:48600397-48600652(+)$1	255	230	249	10.4586
GCAGCAUGAGAAACAUCUG	chr21:34131344-34131575(-)$1	231	34	53	12.4960
CCUGGAGGGACCACCUCUA	chr2:70315464-70315674(+)$1	210	49	68	10.7169
GAAGAAAGAAAACCUUACA	chr12:80182428-80182668(-)$1	240	181	200	10.3041
GAGUGCCUGGAGGAGGGAC	chr7:30174748-30174985(+)$1	237	168	187	10.9976
CGACGCCCUCCUCGGGCCU	chr12:133338129-133338439(-)$1	310	287	306	10.6999
CUCUAGCUCGAGCAGCAGG	chr3:48672641-48672935(-)$1	294	61	80	12.9167
AGAACCUGUGGAUCGGGUU	chr22:21354603-21354842(-)$1	239	11	30	11.5430
CGCCUGGUCAGUCACCGGC	chr16:30616075-30616316(-)$1	241	219	238	12.4960
UGGAUGCUUCAUCAGUUUC	chr11:57563924-57564234(+)$1	310	77	96	13.5284
CUCCAAGCGUUUUGCUCAG	chr16:30615716-30615962(-)$1	246	176	195	12.8482
UCCUACUCACACAGAGAGA	chr2:73679019-73679271(+)$1	252	47	66	13.3853
GCUCUUAAGAUUAUUAUGG	chr3:191075698-191075992(+)$1	294	10	29	13.7606
UUCUACUCACAAAGAGAGA	chr2:73677014-73677255(+)$1	241	210	229	12.4960
UGUGGUAUAUGAAGUAUUG	chr1:162560014-162560276(+)$1	262	104	123	11.8816
AUUCAGAGCAGCCCUCAAA	chr17:42225967-42226229(+)$1	262	65	84	13.8496
UUCUAUCUUUGUUAGGUGG	chr11:9603058-9603289(+)$1	231	5	24	11.5322
AUGGAUGAAAAGAUCAGAU	chr11:68305185-68305456(+)$1	271	151	170	13.3792
UGUUAGCAGCUGUUGCAGA	chr6:97676987-97677301(-)$1	314	102	121	13.8080
GCCGACCUGUGUGAUGUGG	chr6:31127258-31127513(+)$1	255	96	115	9.9508
GACCCCGGAGACCCCAAGG	chr3:135913849-135914093(-)$1	244	198	217	9.9132
GGGGGUGGAGGAGCCGCCC	chr19:42777986-42778235(+)$1	249	139	158	10.7169
UUCUAACAACAAAUGUGAA	chr21:38538600-38538872(+)$1	272	235	254	13.0979
CGGCAGGAGCAGAUCCAGG	chr8:145001619-145001867(-)$1	248	218	237	13.7041
UAAGGCCUGCUCAGGGCCU	chr19:33183371-33183614(+)$1	243	210	229	11.8816
AGUAAGUAGCCUGUACUUG	chr10:103563426-103563661(-)$1	235	169	188	10.2805
AGUGACUGGCCUACAGCAC	chr7:135080391-135080638(-)$1	247	207	226	13.3386
AAUUAACUGACAAAGUAAG	chr15:93540389-93540693(+)$1	304	230	249	12.8336
ACACUUCAUAAUUUGGGGU	chr10:70737302-70737530(+)$1	228	166	185	10.6071
GCGAGUGUGCAAGACGUGG	chr11:67018017-67018281(+)$1	264	225	244	13.1742
AUGGAUGCUGUGUGCAAGC	chr19:18468264-18468580(+)$1	316	87	106	13.2415
CCGGCCUUGCCCUGGGGCC	chr2:103335222-103335490(-)$1	268	190	209	10.6071
CCGGCGGGGUGCACCCAGG	chr17:5485888-5486162(-)$1	274	97	116	13.8408
GCUCCAGGUACUUUCUGAU	chr12:132593096-132593355(+)$1	259	124	143	10.8064
CAUUUGUGUAACUCACUGA	chr6:109689991-109690259(-)$1	268	239	258	12.9645
AGAGACCGGAUAUUGGCGC	chr15:80215898-80216109(-)$1	211	40	59	13.3241
GACAACGAGGAGAUUGCUG	chr2:160604583-160604840(+)$1	257	48	67	12.9167
UCCCAGGACACCCUCCUGG	chr20:23350776-23351021(+)$1	245	197	216	10.6071
CAGAUGCUCUUCAGGCACA	chr10:135098530-135098772(-)$1	242	74	93	10.4547
UUCUGGACCCCCUGUUCAG	chr10:121658187-121658504(+)$1	317	232	251	10.7169
CCCAUUCCUCACCGGACUG	chr10:17686245-17686522(+)$1	277	156	175	11.7529
GAUACUUUCAGAAGGAGAC	chr3:152554526-152554785(+)$1	259	29	48	10.5429
CAGCCGUGACAGCCGCCUU	chr17:37686909-37687147(+)$1	238	70	89	13.5894
UGGAGAACACCCAGUUUGA	chr10:103867978-103868191(-)$1	213	187	206	10.4870

#DB
(((..(((.....)))...	chr9:75782341-75782572(+)$1	1	201	220	13.2676
((((.(((.....))).))	chr16:18812676-18812935(-)$1	1	46	65	12.3583
(((((.((.....)).)))	chr3:64008976-64009223(-)$1	1	189	208	10.1455
.....(((.....)))...	chr11:831551-831796(+)$1	1	61	80	10.8326
((...(((.....)))..)	chr1:32842131-32842383(-)$1	1	227	246	13.8408
.(((.(((.....))).))	chr1:151378133-151378388(-)$1	1	148	167	12.8336
(.((((((.....))))))	chr20:48600397-48600652(+)$1	1	230	249	10.4586
((((.(((.....))))))	chr21:34131344-34131575(-)$1	1	34	53	12.4960
.(((((((.....))))))	chr2:70315464-70315674(+)$1	1	49	68	10.7169
)))))(((.....))))))	chr12:80182428-80182668(-)$1	1	181	200	10.3041
..((.(((.....))).))	chr7:30174748-30174985(+)$1	1	168	187	10.9976
((..((((.....)))).)	chr12:133338129-133338439(-)$1	1	287	306	10.6999
((((.(((.....))).))	chr3:48672641-48672935(-)$1	1	61	80	12.9167
.(((((((.....))))))	chr22:21354603-21354842(-)$1	1	11	30	11.5430
((((.(((.....))))))	chr16:30616075-30616316(-)$1	1	219	238	12.4960
)(((.(((.....))).))	chr11:57563924-57564234(+)$1	1	77	96	13.5284
((((((((.....)))...	chr16:30615716-30615962(-)$1	1	176	195	12.8482
((...(((.....))).))	chr2:73679019-73679271(+)$1	1	47	66	13.3853
(((..(((.....))).))	chr3:191075698-191075992(+)$1	1	10	29	13.7606
((((.(((.....))))))	chr2:73677014-73677255(+)$1	1	210	229	12.4960
((((((((.....))))))	chr1:162560014-162560276(+)$1	1	104	123	11.8816
(((..(((.....)))..)	chr17:42225967-42226229(+)$1	1	65	84	13.8496
((((((((.....))))))	chr11:9603058-9603289(+)$1	1	5	24	11.5322
.((..(((.....)))...	chr11:68305185-68305456(+)$1	1	151	170	13.3792
(....(((.....)))...	chr6:97676987-97677301(-)$1	1	102	121	13.8080
(((.((.(.....).))))	chr6:31127258-31127513(+)$1	1	96	115	9.9508
(.((..((.....))..))	chr3:135913849-135914093(-)$1	1	198	217	9.9132
.(((((((.....))))))	chr19:42777986-42778235(+)$1	1	139	158	10.7169
..((.(((.....)))..)	chr21:38538600-38538872(+)$1	1	235	254	13.0979
)(((.(((.....)))..)	chr8:145001619-145001867(-)$1	1	218	237	13.7041
((((((((.....))))))	chr19:33183371-33183614(+)$1	1	210	229	11.8816
(.((((((.....))))))	chr10:103563426-103563661(-)$1	1	169	188	10.2805
.(((.(((.....))))))	chr7:135080391-135080638(-)$1	1	207	226	13.3386
.(((.(((.....))).))	chr15:93540389-93540693(+)$1	1	230	249	12.8336
..((((((.....))))))	chr10:70737302-70737530(+)$1	1	166	185	10.6071
((.(.(((.....)))).)	chr11:67018017-67018281(+)$1	1	225	244	13.1742
.((..(((.....)))..)	chr19:18468264-18468580(+)$1	1	87	106	13.2415
..((((((.....))))))	chr2:103335222-103335490(-)$1	1	190	209	10.6071
((...(((.....)))..)	chr17:5485888-5486162(-)$1	1	97	116	13.8408
(...((((.....)))).)	chr12:132593096-132593355(+)$1	1	124	143	10.8064
((...(((.....))))))	chr6:109689991-109690259(-)$1	1	239	258	12.9645
((.(.(((.....)))).)	chr15:80215898-80216109(-)$1	1	40	59	13.3241
((((.(((.....))).))	chr2:160604583-160604840(+)$1	1	48	67	12.9167
..((((((.....))))))	chr20:23350776-23351021(+)$1	1	197	216	10.6071
((..((((.....))))..	chr10:135098530-135098772(-)$1	1	74	93	10.4547
.(((((((.....))))))	chr10:121658187-121658504(+)$1	1	232	251	10.7169
).((.(((.....))).))	chr10:17686245-17686522(+)$1	1	156	175	11.7529
((..((((.....))))..	chr3:152554526-152554785(+)$1	1	29	48	10.5429
((((.(((.....)))...	chr17:37686909-37687147(+)$1	1	70	89	13.5894
(((.((((.....))))..	chr10:103867978-103868191(-)$1	1	187	206	10.4870

#PSSM
d : 0.23	: : 0.12	c : 0.10	e : 0.10	f : 0.08	! : 0.08	[ : 0.06	h : 0.04	= : 0.04	b : 0.04	% : 0.02	i : 0.02	g : 0.02	" : 0.02	a : 0.02	
d : 0.19	c : 0.18	g : 0.10	f : 0.06	[ : 0.06	e : 0.06	b : 0.06	! : 0.06	h : 0.04	: : 0.04	= : 0.04	" : 0.04	% : 0.02	i : 0.02	# : 0.02	
c : 0.16	f : 0.14	d : 0.12	b : 0.12	" : 0.10	g : 0.10	! : 0.06	h : 0.04	= : 0.04	[ : 0.04	% : 0.02	i : 0.02	# : 0.02	a : 0.02	
! : 0.16	c : 0.12	f : 0.12	d : 0.12	" : 0.10	g : 0.08	b : 0.08	h : 0.04	= : 0.04	[ : 0.04	a : 0.04	% : 0.02	i : 0.02	# : 0.02	
[ : 0.34	! : 0.12	f : 0.12	d : 0.10	" : 0.08	g : 0.08	= : 0.04	c : 0.02	% : 0.02	h : 0.02	i : 0.02	# : 0.02	b : 0.02	
c : 0.60	f : 0.10	d : 0.10	g : 0.08	= : 0.04	[ : 0.02	i : 0.02	b : 0.02	! : 0.02	
c : 0.60	f : 0.10	d : 0.10	g : 0.08	b : 0.04	= : 0.04	i : 0.02	[ : 0.02	
c : 0.60	f : 0.10	d : 0.10	g : 0.08	b : 0.04	= : 0.04	i : 0.02	a : 0.02	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
c : 0.60	f : 0.10	d : 0.10	g : 0.08	b : 0.04	= : 0.04	i : 0.02	a : 0.02	
c : 0.60	f : 0.10	d : 0.10	g : 0.08	b : 0.04	= : 0.04	i : 0.02	] : 0.02	
c : 0.60	f : 0.10	d : 0.10	g : 0.08	= : 0.04	] : 0.02	i : 0.02	b : 0.02	2 : 0.02	
] : 0.19	d : 0.18	2 : 0.14	f : 0.10	3 : 0.08	g : 0.08	4 : 0.04	c : 0.04	= : 0.04	a : 0.04	F : 0.02	i : 0.02	b : 0.02	
2 : 0.18	d : 0.14	c : 0.12	f : 0.10	g : 0.10	3 : 0.08	] : 0.08	b : 0.06	4 : 0.04	= : 0.04	h : 0.02	F : 0.02	i : 0.02	
c : 0.19	d : 0.16	f : 0.10	g : 0.10	b : 0.10	3 : 0.08	e : 0.06	2 : 0.06	4 : 0.04	= : 0.04	h : 0.02	F : 0.02	i : 0.02	

#score	601.729391425756
#seq	50
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_UTR_m3_run2.txt

#BEAR
eeeemmmmeeee	chr10:977208-977498(-)$1	290	55	67	7.2923
ddddoooooodd	chr19:575271-575533(+)$1	262	220	232	5.7447
eeeemmmmeeee	chr5:74161184-74161477(-)$1	293	93	105	7.2923
====mmmm====	chr20:62566493-62566717(+)$1	224	56	68	5.9493
ddddmmmmdddd	chr2:232574635-232574886(+)$1	251	130	142	8.4213
eeeemmmmeeee	chr5:154136597-154136846(+)$1	249	71	83	7.2923
eeeemmmmeeee	chr3:171527224-171527456(-)$1	232	203	215	7.2923
ddddmmmmdddd	chr2:10443794-10444035(+)$1	241	11	23	8.4213
ddddmmmmdddd	chr12:133404782-133405078(-)$1	296	225	237	8.4213
ddddmmmmdddd	chr10:102759197-102759456(+)$1	259	89	101	8.4213
ddddmmmmdddd	chr21:44269593-44269862(-)$1	269	214	226	8.4213
ddddlllddddc	chr18:46066469-46066690(+)$1	221	97	109	5.6653
ddddmmmmdddd	chr4:763946-764199(-)$1	253	0	12	8.4213
dd[ammmma]dd	chr5:74162099-74162359(-)$1	260	173	185	7.1062
ddddmmmmdddd	chr4:129732852-129733102(+)$1	250	194	206	8.4213
eeeemmmmeeee	chr17:75450388-75450635(+)$1	247	55	67	7.2923
ddddmmmmdddd	chr19:9785350-9785625(-)$1	275	155	167	8.4213
[cccmmmmccc]	chr16:73081638-73081879(-)$1	241	56	68	6.1792
eeeemmmmeeee	chr7:2685063-2685309(+)$1	246	207	219	7.2923
ddddoooooodd	chr3:187455548-187455804(-)$1	256	103	115	5.7447
ddddmmmmdddd	chr3:4402907-4403203(-)$1	296	32	44	8.4213
ddddoooooodd	chr20:32251549-32251799(-)$1	250	56	68	5.7447
ddddlllddddg	chr11:2158434-2158686(-)$1	252	105	117	5.6492
eeeemmmmeeee	chr5:138629426-138629692(+)$1	266	1	13	7.2923
ddddoooooodd	chr4:763421-763712(-)$1	291	35	47	5.7447
eeeemmmmeeee	chr15:67391105-67391425(+)$1	320	161	173	7.2923
ddddmmmmdddd	chr2:241499731-241499989(-)$1	258	23	35	8.4213
ddddmmmmdddd	chr2:242751910-242752222(+)$1	312	235	247	8.4213
ddddmmmmdddd	chr4:763252-763510(-)$1	258	167	179	8.4213
ddddmmmmdddd	chr2:159314562-159314818(+)$1	256	136	148	8.4213
$cccmmmmccc2	chr17:75318617-75318871(+)$1	254	155	167	5.7061
ddddmmmmdddd	chr20:36149534-36149805(-)$1	271	202	214	8.4213
!cccmmmmccc2	chr17:75452336-75452622(+)$1	286	243	255	6.0790
eeeemmmmeeee	chr14:54421085-54421340(-)$1	255	7	19	7.2923
cc[ammmma]cc	chr1:21112686-21112933(-)$1	247	212	224	5.8940
[cccmmmmccc]	chr20:36155856-36156134(-)$1	278	6	18	6.1792
ddddmmmmdddd	chr6:64282264-64282542(+)$1	278	118	130	8.4213
ddddmmmmdddd	chr9:127020529-127020798(+)$1	269	72	84	8.4213
eeeemmmmeeee	chr7:917845-918085(+)$1	240	73	85	7.2923
!cccmmmmccc2	chr6:170101807-170102134(-)$1	327	124	136	6.0790
eeeemmmmeeee	chr6:11198780-11199079(-)$1	299	166	178	7.2923
ddddmmmmdddd	chr3:185446366-185446638(-)$1	272	201	213	8.4213
eeeemmmmeeee	chr17:75316246-75316507(+)$1	261	154	166	7.2923

#otherMatches

#Seq PSSM
ggcgcggccgcc	chr10:977208-977498(-)$1	290	55	67	7.2923
CCUCAGAUGAGA	chr19:575271-575533(+)$1	262	220	232	5.7447
AGGCCUGUGCCU	chr5:74161184-74161477(-)$1	293	93	105	7.2923
AUAUGUGUAUAU	chr20:62566493-62566717(+)$1	224	56	68	5.9493
CACCAAAAGGUG	chr2:232574635-232574886(+)$1	251	130	142	8.4213
GUGCGUGUGCGC	chr5:154136597-154136846(+)$1	249	71	83	7.2923
GCCUCCAAAGGC	chr3:171527224-171527456(-)$1	232	203	215	7.2923
GCCCACGUGGGU	chr2:10443794-10444035(+)$1	241	11	23	8.4213
CUGCCCCCGCGG	chr12:133404782-133405078(-)$1	296	225	237	8.4213
GGCCCCGGGGCC	chr10:102759197-102759456(+)$1	259	89	101	8.4213
CUUGUGCUCAGG	chr21:44269593-44269862(-)$1	269	214	226	8.4213
CGGUGCAAUCGG	chr18:46066469-46066690(+)$1	221	97	109	5.6653
UAGCAAAUGCUG	chr4:763946-764199(-)$1	253	0	12	8.4213
GUGGGCCGCGGC	chr5:74162099-74162359(-)$1	260	173	185	7.1062
CGAGCCCGCUCG	chr4:129732852-129733102(+)$1	250	194	206	8.4213
AGGUAGGGACCU	chr17:75450388-75450635(+)$1	247	55	67	7.2923
UGAGUACUUUCA	chr19:9785350-9785625(-)$1	275	155	167	8.4213
AGAGCCACCUCC	chr16:73081638-73081879(-)$1	241	56	68	6.1792
GGGGCCAGCCCC	chr7:2685063-2685309(+)$1	246	207	219	7.2923
GGAAAGUUACUU	chr3:187455548-187455804(-)$1	256	103	115	5.7447
GCCGGUGAUGGU	chr3:4402907-4403203(-)$1	296	32	44	8.4213
GCCUCCGACAGG	chr20:32251549-32251799(-)$1	250	56	68	5.7447
GGGUGGAGCCCG	chr11:2158434-2158686(-)$1	252	105	117	5.6492
UGGGAGUCUCCG	chr5:138629426-138629692(+)$1	266	1	13	7.2923
CAUGUAUCUUCG	chr4:763421-763712(-)$1	291	35	47	5.7447
CCAUGGAGAUGG	chr15:67391105-67391425(+)$1	320	161	173	7.2923
AGGCUGGGGCUU	chr2:241499731-241499989(-)$1	258	23	35	8.4213
GAGUGUGCACUC	chr2:242751910-242752222(+)$1	312	235	247	8.4213
GAUUUUCUAAUC	chr4:763252-763510(-)$1	258	167	179	8.4213
UGCAGGAAUGCG	chr2:159314562-159314818(+)$1	256	136	148	8.4213
GGCCCCUAGGCA	chr17:75318617-75318871(+)$1	254	155	167	5.7061
GCGCAUGCGCGC	chr20:36149534-36149805(-)$1	271	202	214	8.4213
CACCACCAGGUA	chr17:75452336-75452622(+)$1	286	243	255	6.0790
UUCUUGAAGGAG	chr14:54421085-54421340(-)$1	255	7	19	7.2923
GCCCAUCUGAGC	chr1:21112686-21112933(-)$1	247	212	224	5.8940
UCCCUUCUGGGU	chr20:36155856-36156134(-)$1	278	6	18	6.1792
GCGCCUCGGCGC	chr6:64282264-64282542(+)$1	278	118	130	8.4213
GUGCGUGUGCAC	chr9:127020529-127020798(+)$1	269	72	84	8.4213
AGUAUUUUUGCU	chr7:917845-918085(+)$1	240	73	85	7.2923
CCCCUAGCGGGC	chr6:170101807-170102134(-)$1	327	124	136	6.0790
uuuauauuuaaa	chr6:11198780-11199079(-)$1	299	166	178	7.2923
AGCAAAUCUGUU	chr3:185446366-185446638(-)$1	272	201	213	8.4213
CCGUAGGAAUGG	chr17:75316246-75316507(+)$1	261	154	166	7.2923

#DB
((((....))))	chr10:977208-977498(-)$1	1	55	67	7.2923
((((......))	chr19:575271-575533(+)$1	1	220	232	5.7447
((((....))))	chr5:74161184-74161477(-)$1	1	93	105	7.2923
((((....))))	chr20:62566493-62566717(+)$1	1	56	68	5.9493
((((....))))	chr2:232574635-232574886(+)$1	1	130	142	8.4213
((((....))))	chr5:154136597-154136846(+)$1	1	71	83	7.2923
((((....))))	chr3:171527224-171527456(-)$1	1	203	215	7.2923
((((....))))	chr2:10443794-10444035(+)$1	1	11	23	8.4213
((((....))))	chr12:133404782-133405078(-)$1	1	225	237	8.4213
((((....))))	chr10:102759197-102759456(+)$1	1	89	101	8.4213
((((....))))	chr21:44269593-44269862(-)$1	1	214	226	8.4213
((((...)))))	chr18:46066469-46066690(+)$1	1	97	109	5.6653
((((....))))	chr4:763946-764199(-)$1	1	0	12	8.4213
((.(....).))	chr5:74162099-74162359(-)$1	1	173	185	7.1062
((((....))))	chr4:129732852-129733102(+)$1	1	194	206	8.4213
((((....))))	chr17:75450388-75450635(+)$1	1	55	67	7.2923
((((....))))	chr19:9785350-9785625(-)$1	1	155	167	8.4213
.(((....))).	chr16:73081638-73081879(-)$1	1	56	68	6.1792
((((....))))	chr7:2685063-2685309(+)$1	1	207	219	7.2923
((((......))	chr3:187455548-187455804(-)$1	1	103	115	5.7447
((((....))))	chr3:4402907-4403203(-)$1	1	32	44	8.4213
((((......))	chr20:32251549-32251799(-)$1	1	56	68	5.7447
((((...))))(	chr11:2158434-2158686(-)$1	1	105	117	5.6492
((((....))))	chr5:138629426-138629692(+)$1	1	1	13	7.2923
((((......))	chr4:763421-763712(-)$1	1	35	47	5.7447
((((....))))	chr15:67391105-67391425(+)$1	1	161	173	7.2923
((((....))))	chr2:241499731-241499989(-)$1	1	23	35	8.4213
((((....))))	chr2:242751910-242752222(+)$1	1	235	247	8.4213
((((....))))	chr4:763252-763510(-)$1	1	167	179	8.4213
((((....))))	chr2:159314562-159314818(+)$1	1	136	148	8.4213
.(((....))).	chr17:75318617-75318871(+)$1	1	155	167	5.7061
((((....))))	chr20:36149534-36149805(-)$1	1	202	214	8.4213
.(((....))).	chr17:75452336-75452622(+)$1	1	243	255	6.0790
((((....))))	chr14:54421085-54421340(-)$1	1	7	19	7.2923
((.(....).))	chr1:21112686-21112933(-)$1	1	212	224	5.8940
.(((....))).	chr20:36155856-36156134(-)$1	1	6	18	6.1792
((((....))))	chr6:64282264-64282542(+)$1	1	118	130	8.4213
((((....))))	chr9:127020529-127020798(+)$1	1	72	84	8.4213
((((....))))	chr7:917845-918085(+)$1	1	73	85	7.2923
.(((....))).	chr6:170101807-170102134(-)$1	1	124	136	6.0790
((((....))))	chr6:11198780-11199079(-)$1	1	166	178	7.2923
((((....))))	chr3:185446366-185446638(-)$1	1	201	213	8.4213
((((....))))	chr17:75316246-75316507(+)$1	1	154	166	7.2923

#PSSM
d : 0.55	e : 0.27	[ : 0.04	! : 0.04	= : 0.02	$ : 0.02	c : 0.02	
d : 0.55	e : 0.27	c : 0.13	= : 0.02	
d : 0.53	e : 0.27	c : 0.11	[ : 0.04	= : 0.02	
d : 0.53	e : 0.27	c : 0.11	a : 0.04	= : 0.02	
m : 0.86	o : 0.09	l : 0.04	
m : 0.86	o : 0.09	l : 0.04	
m : 0.86	o : 0.09	l : 0.04	
m : 0.86	o : 0.09	d : 0.04	
d : 0.44	e : 0.27	c : 0.11	o : 0.09	a : 0.04	= : 0.02	
d : 0.44	e : 0.27	c : 0.11	o : 0.09	] : 0.04	= : 0.02	
d : 0.55	e : 0.27	c : 0.13	= : 0.02	
d : 0.51	e : 0.27	2 : 0.06	c : 0.04	] : 0.04	= : 0.02	g : 0.02	

#score	314.1378040921187
#seq	43
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_UTR_m2_run2.txt

#BEAR
fffffuuuuuuuuuuuuffffff	chr1:109178246-109178500(+)$1	254	120	143	24.4718
gggggwwwwwwwwwwwwwwgggg	chr12:53862500-53862713(+)$1	213	39	62	21.5997
======ttttttttttt======	chr17:30697015-30697316(+)$1	301	222	245	23.1524
ggggguuuuuuuuuuuugggggg	chr3:185634947-185635207(-)$1	260	194	217	24.0592
fffffftttttttttttffffff	chr9:97222613-97222865(+)$1	252	119	142	23.9740
fffffuuuuuuuuuuuuffffff	chr12:110476782-110477043(+)$1	261	193	216	24.4718
[ddddtttttttttttdddd]dd	chr4:122738614-122738857(-)$1	243	98	121	21.3197
fffffftttttttttttffffff	chr3:31678674-31678911(+)$1	237	17	40	23.9740
iiiiiitttttttttttiiiiii	chr16:83845034-83845345(+)$1	311	224	247	22.6793
JJcccuuuuuuuuuuuuccceee	chr14:23495006-23495283(-)$1	277	38	61	20.5601
fffffftttttttttttffffff	chr17:73163990-73164203(-)$1	213	127	150	23.9740
f!!bbuuuuuuuuuuuubb22ff	chr12:111888373-111888638(+)$1	265	202	225	22.4981
c[ddddtttttttttttdddd]c	chr22:38284334-38284604(+)$1	270	133	156	22.2821
eeeeettttttttttteeeeeff	chr11:22844435-22844777(-)$1	342	36	59	22.5994
##cccuuuuuuuuuuuucccccc	chr12:53860941-53861173(+)$1	232	93	116	23.3581
ggggguuuuuuuuuuuugggggg	chr1:225590825-225591090(-)$1	265	146	169	24.0592
fffwwwwwwwwwwwwwwffffff	chr7:72950717-72951003(-)$1	286	78	101	22.2138
fffffftttttttttttffffff	chr11:73965267-73965520(+)$1	253	169	192	23.9740
fffffuuuuuuuuuuuuffffff	chr17:49371219-49371501(+)$1	282	40	63	24.4718
cc[bbuuuuuuuuuuuubb]ccc	chr7:77423093-77423362(-)$1	269	84	107	22.4438
iiiiiitttttttttttiiiiii	chr2:55199911-55200140(-)$1	229	113	136	22.6793
fffffuuuuuuuuuuuuffffff	chr12:49083898-49084184(-)$1	286	79	102	24.4718
ee[ccctttttttttttccc444	chr7:154760294-154760614(-)$1	320	101	124	23.0699
fffffftttttttttttffffff	chr17:65105131-65105384(-)$1	253	16	39	23.9740
eeeeeuuuuuuuuuuuueeeee6	chr1:224605859-224606112(-)$1	253	83	106	22.9941
ddddvvvvvvvvvvvvvddddff	chr13:28240849-28241146(+)$1	297	105	128	22.5184
iiiiivvvvvvvvvvvvviiiii	chrX:80553476-80553742(+)$1	266	5	28	22.9306
[eeeeettttttttttteeeee]	chr11:118472805-118473076(+)$1	271	25	48	23.0585
dcccwwwwwwwwwwwwwwccc]d	chr12:24968724-24968990(-)$1	266	41	64	21.1666
!dddduuuuuuuuuuuudddd22	chr6:38644365-38644597(-)$1	232	94	117	22.2772
eeeeevvvvvvvvvvvvveeeee	chr1:202910358-202910571(-)$1	213	9	32	22.8199
eeeeettttttttttteeeeeGG	chr3:152881781-152882116(+)$1	335	249	272	21.5166
bbddddtttttttttttdddd]b	chr2:37431000-37431271(+)$1	271	232	255	21.3871
fffffftttttttttttffffff	chr12:50493824-50494147(+)$1	323	157	180	23.9740
fffffuuuuuuuuuuuuffffff	chr12:124081803-124082024(+)$1	221	88	111	24.4718
e[cccuuuuuuuuuuuuccc]ee	chr14:53107012-53107267(-)$1	255	100	123	23.8243
eeeeauuuuuuuuuuuua]eeee	chr3:196558286-196558554(+)$1	268	51	74	23.4485
ddddvvvvvvvvvvvvvdddd:f	chr1:109639019-109639298(+)$1	279	105	128	21.2742
eeeewwwwwwwwwwwwwweeeee	chr1:184042248-184042502(+)$1	254	156	179	21.4458
[ddddtttttttttttdddd]gg	chr5:32126089-32126361(-)$1	272	88	111	21.9107
ffffvvvvvvvvvvvvvffffff	chr9:130454016-130454329(+)$1	313	212	235	23.9896
fffffuuuuuuuuuuuuffffff	chr11:34493405-34493679(+)$1	274	156	179	24.4718
ggggggtttttttttttgggggg	chr2:191555005-191555335(+)$1	330	248	271	23.3945
fffffftttttttttttffffff	chr5:71515895-71516152(-)$1	257	214	237	23.9740
ggggguuuuuuuuuuuugggggg	chr8:41367433-41367708(+)$1	275	2	25	24.0592
gg[bbuuuuuuuuuuuubb]ggg	chr11:47379979-47380232(-)$1	253	93	116	22.9656
:eeeeettttttttttteeeee:	chr12:118471833-118472107(-)$1	274	11	34	20.7728
ffffvvvvvvvvvvvvvffffff	chr1:54497376-54497657(-)$1	281	157	180	23.9896
!eeeeettttttttttteeeee]	chr7:6509200-6509485(-)$1	285	167	190	23.0039
gggggtttttttttttggggggg	chr8:54879142-54879433(-)$1	291	85	108	22.6590
ff[ccctttttttttttcccfff	chr3:5220358-5220600(+)$1	242	15	38	23.8818
fffffuuuuuuuuuuuuffffff	chr16:20781206-20781495(+)$1	289	59	82	24.4718
cccwwwwwwwwwwwwwwccc333	chr4:103809373-103809641(+)$1	268	121	144	21.5002
ggggvvvvvvvvvvvvvgggggg	chr11:65764928-65765186(-)$1	258	116	139	23.6130
!!cccuuuuuuuuuuuuccc333	chr11:87033647-87033930(+)$1	283	123	146	23.8563
ggggggtttttttttttgggggg	chr6:34213507-34213745(+)$1	238	103	126	23.3945
eeeavvvvvvvvvvvvva]eeee	chr7:135612922-135613142(-)$1	220	115	138	22.9327
fffffftttttttttttffffff	chr18:55268179-55268426(-)$1	247	74	97	23.9740
e[ccctttttttttttccc22ee	chr1:110566057-110566317(+)$1	260	122	145	22.1431
!!cccuuuuuuuuuuuuccc22c	chr3:33184364-33184636(+)$1	272	98	121	23.3486
ffcccuuuuuuuuuuuuccc]ff	chr6:37142176-37142395(+)$1	219	83	106	24.2838
$dddduuuuuuuuuuuuddddee	chr11:59837895-59838167(+)$1	272	58	81	22.3724
eeeeettttttttttteeeee33	chr20:463390-463633(-)$1	243	83	106	22.3444
dddwwwwwwwwwwwwwwddddff	chr16:75674047-75674347(-)$1	300	197	220	20.8988

#otherMatches

#Seq PSSM
AAAUGAAAUAACAAGUGCAUUUA	chr1:109178246-109178500(+)$1	254	120	143	24.4718
UUGCUCUCUUCUGUCUUUUAGCA	chr12:53862500-53862713(+)$1	213	39	62	21.5997
AUGUGUAACAAUAUUUAAUGUAU	chr17:30697015-30697316(+)$1	301	222	245	23.1524
ACUUAUAUACCUGCAACUAAGUG	chr3:185634947-185635207(-)$1	260	194	217	24.0592
GGGAAUACGCACAUUAAGUUCCU	chr9:97222613-97222865(+)$1	252	119	142	23.9740
UUUACUUUGCAUUUACCGUGAGC	chr12:110476782-110477043(+)$1	261	193	216	24.4718
AAUCACUCAAAGUAUAUGGUGUA	chr4:122738614-122738857(-)$1	243	98	121	21.3197
UGAACAUUUUCUCCAGUUGUUUA	chr3:31678674-31678911(+)$1	237	17	40	23.9740
GGCGGUUCUUGCAUAACAUUGUC	chr16:83845034-83845345(+)$1	311	224	247	22.6793
ACGGACACAGUGACCCAUCCUCC	chr14:23495006-23495283(-)$1	277	38	61	20.5601
UGUUUUAACAAAAAAAAAAAACA	chr17:73163990-73164203(-)$1	213	127	150	23.9740
GAAGUGACACUAAGCCAACACCU	chr12:111888373-111888638(+)$1	265	202	225	22.4981
UUGAUGAUAUUCACACACAUUCA	chr22:38284334-38284604(+)$1	270	133	156	22.2821
GAAGUACUGUUAUAUAACUUCAA	chr11:22844435-22844777(-)$1	342	36	59	22.5994
CAGUCUCAUUUUCCCAUGACGCA	chr12:53860941-53861173(+)$1	232	93	116	23.3581
GGAAAAAAAUCCGAAACUUUCUU	chr1:225590825-225591090(-)$1	265	146	169	24.0592
UGUCACAAACUGCCCCAGCAAGA	chr7:72950717-72951003(-)$1	286	78	101	22.2138
UGUGGAUUUCACAUCACUCCACA	chr11:73965267-73965520(+)$1	253	169	192	23.9740
GCAGGUUCAUCUUCCUUCCUGUA	chr17:49371219-49371501(+)$1	282	40	63	24.4718
CAUCAUCUCCUUUCUAUUGCUGU	chr7:77423093-77423362(-)$1	269	84	107	22.4438
GGAAUAAAAAACCUGUAUAUUUU	chr2:55199911-55200140(-)$1	229	113	136	22.6793
UAUGGCUUUUUGUUUCUCCAUGU	chr12:49083898-49084184(-)$1	286	79	102	24.4718
acagcuacaguuuccacagcaac	chr7:154760294-154760614(-)$1	320	101	124	23.0699
GCAGCAGCCCCCUCCCAUGCUGC	chr17:65105131-65105384(-)$1	253	16	39	23.9740
UAUCACAAUACCAAACUUGAUAA	chr1:224605859-224606112(-)$1	253	83	106	22.9941
UACAAACCUUUCAAACCUGUAUU	chr13:28240849-28241146(+)$1	297	105	128	22.5184
UGCCAAGUAAGCUUAAAAUGGCA	chrX:80553476-80553742(+)$1	266	5	28	22.9306
AUUUGAUUUUUUGCAUUUCAGGA	chr11:118472805-118473076(+)$1	271	25	48	23.0585
CCCCGAGCAACAUUCUAAGGGUG	chr12:24968724-24968990(-)$1	266	41	64	21.1666
ACCUUAUUUAUUUGGGAAAGGGG	chr6:38644365-38644597(-)$1	232	94	117	22.2772
GCCCACUUUCACACCCACUGGGC	chr1:202910358-202910571(-)$1	213	9	32	22.8199
CUUUGUAAAUGUGAUUCAGGGCC	chr3:152881781-152882116(+)$1	335	249	272	21.5166
GCUGUAUaauacacauuugcaug	chr2:37431000-37431271(+)$1	271	232	255	21.3871
CGAGUUAGCAUAUCCCAGGCUCG	chr12:50493824-50494147(+)$1	323	157	180	23.9740
UCAUCUCCACUUAAAUUGAUGAC	chr12:124081803-124082024(+)$1	221	88	111	24.4718
gugaaacagacuuacacuucuuc	chr14:53107012-53107267(-)$1	255	100	123	23.8243
GAGGCUAAUACAACUCUGUCUUC	chr3:196558286-196558554(+)$1	268	51	74	23.4485
CCAGUUUUUACAGCCUCCUGGGU	chr1:109639019-109639298(+)$1	279	105	128	21.2742
GGCAUUUUAUAUGUACCUUGUCA	chr1:184042248-184042502(+)$1	254	156	179	21.4458
UAGUUUUUCUUCUGUUGACUUCU	chr5:32126089-32126361(-)$1	272	88	111	21.9107
AGAAGAUGGUCAUUUUAUUCUCU	chr9:130454016-130454329(+)$1	313	212	235	23.9896
UGUAAUUGCUUACAUUUUUACAA	chr11:34493405-34493679(+)$1	274	156	179	24.4718
UGUUGCAAUCUAUAACAGUAAUA	chr2:191555005-191555335(+)$1	330	248	271	23.3945
GUGGGAUACUCACACAUUCCCAC	chr5:71515895-71516152(-)$1	257	214	237	23.9740
GGUUCUCUUCAUUCCUUGGGCCA	chr8:41367433-41367708(+)$1	275	2	25	24.0592
aucugggugugugugagcaagug	chr11:47379979-47380232(-)$1	253	93	116	22.9656
CGGAAAGCCCUUCGAAGUUUCCU	chr12:118471833-118472107(-)$1	274	11	34	20.7728
AGUUACCUUAGUUAACAAGCUGA	chr1:54497376-54497657(-)$1	281	157	180	23.9896
AUGGAAAUCAUGAUACCUUCCGA	chr7:6509200-6509485(-)$1	285	167	190	23.0039
UUGCAUAUCAUUUUGUUGUAAUA	chr8:54879142-54879433(-)$1	291	85	108	22.6590
GCAUUCAAAAUCUAGAAGAAGCU	chr3:5220358-5220600(+)$1	242	15	38	23.8818
GGACAGAAACAAAUAUAUGUCCU	chr16:20781206-20781495(+)$1	289	59	82	24.4718
acucaagucccacagaaagucuu	chr4:103809373-103809641(+)$1	268	121	144	21.5002
uaucauuacaaaccucagaugga	chr11:65764928-65765186(-)$1	258	116	139	23.6130
UAUACUUCUGCUUAAAUGUAAUU	chr11:87033647-87033930(+)$1	283	123	146	23.8563
UGUUCACAAACUACCUCUGGACA	chr6:34213507-34213745(+)$1	238	103	126	23.3945
GUCCUUUUUUUAAUCCUGUGGCU	chr7:135612922-135613142(-)$1	220	115	138	22.9327
AAUAGCCUUUUGUAUCAGUUAUU	chr18:55268179-55268426(-)$1	247	74	97	23.9740
UCUGUCAAGCCAUGUAACAAAGG	chr1:110566057-110566317(+)$1	260	122	145	22.1431
CCUGUCUUCUUAUCCUCACAUCU	chr3:33184364-33184636(+)$1	272	98	121	23.3486
GGACUAGCACCAUUUUAAGUCCC	chr6:37142176-37142395(+)$1	219	83	106	24.2838
UGUAACUUCUAUGAUCAUUACUC	chr11:59837895-59838167(+)$1	272	58	81	22.3724
UCUUGUAAAUGUAUCUUGAGAGG	chr20:463390-463633(-)$1	243	83	106	22.3444
ACUUCAUCCAAAAAUAUAGUCAC	chr16:75674047-75674347(-)$1	300	197	220	20.8988

#DB
(((((............))))))	chr1:109178246-109178500(+)$1	1	120	143	24.4718
(((((..............))))	chr12:53862500-53862713(+)$1	1	39	62	21.5997
((((((...........))))))	chr17:30697015-30697316(+)$1	1	222	245	23.1524
(((((............))))))	chr3:185634947-185635207(-)$1	1	194	217	24.0592
((((((...........))))))	chr9:97222613-97222865(+)$1	1	119	142	23.9740
(((((............))))))	chr12:110476782-110477043(+)$1	1	193	216	24.4718
.((((...........)))).))	chr4:122738614-122738857(-)$1	1	98	121	21.3197
((((((...........))))))	chr3:31678674-31678911(+)$1	1	17	40	23.9740
((((((...........))))))	chr16:83845034-83845345(+)$1	1	224	247	22.6793
(((((............)))(((	chr14:23495006-23495283(-)$1	1	38	61	20.5601
((((((...........))))))	chr17:73163990-73164203(-)$1	1	127	150	23.9740
(..((............))..))	chr12:111888373-111888638(+)$1	1	202	225	22.4981
(.((((...........)))).)	chr22:38284334-38284604(+)$1	1	133	156	22.2821
(((((...........)))))((	chr11:22844435-22844777(-)$1	1	36	59	22.5994
..(((............))))))	chr12:53860941-53861173(+)$1	1	93	116	23.3581
(((((............))))))	chr1:225590825-225591090(-)$1	1	146	169	24.0592
(((..............))))))	chr7:72950717-72951003(-)$1	1	78	101	22.2138
((((((...........))))))	chr11:73965267-73965520(+)$1	1	169	192	23.9740
(((((............))))))	chr17:49371219-49371501(+)$1	1	40	63	24.4718
((.((............)).)))	chr7:77423093-77423362(-)$1	1	84	107	22.4438
((((((...........))))))	chr2:55199911-55200140(-)$1	1	113	136	22.6793
(((((............))))))	chr12:49083898-49084184(-)$1	1	79	102	24.4718
((.(((...........)))...	chr7:154760294-154760614(-)$1	1	101	124	23.0699
((((((...........))))))	chr17:65105131-65105384(-)$1	1	16	39	23.9740
(((((............))))).	chr1:224605859-224606112(-)$1	1	83	106	22.9941
((((.............))))((	chr13:28240849-28241146(+)$1	1	105	128	22.5184
(((((.............)))))	chrX:80553476-80553742(+)$1	1	5	28	22.9306
.(((((...........))))).	chr11:118472805-118473076(+)$1	1	25	48	23.0585
((((..............))).)	chr12:24968724-24968990(-)$1	1	41	64	21.1666
.((((............))))..	chr6:38644365-38644597(-)$1	1	94	117	22.2772
(((((.............)))))	chr1:202910358-202910571(-)$1	1	9	32	22.8199
(((((...........)))))))	chr3:152881781-152882116(+)$1	1	249	272	21.5166
((((((...........)))).)	chr2:37431000-37431271(+)$1	1	232	255	21.3871
((((((...........))))))	chr12:50493824-50494147(+)$1	1	157	180	23.9740
(((((............))))))	chr12:124081803-124082024(+)$1	1	88	111	24.4718
(.(((............))).))	chr14:53107012-53107267(-)$1	1	100	123	23.8243
(((((............).))))	chr3:196558286-196558554(+)$1	1	51	74	23.4485
((((.............)))).(	chr1:109639019-109639298(+)$1	1	105	128	21.2742
((((..............)))))	chr1:184042248-184042502(+)$1	1	156	179	21.4458
.((((...........)))).))	chr5:32126089-32126361(-)$1	1	88	111	21.9107
((((.............))))))	chr9:130454016-130454329(+)$1	1	212	235	23.9896
(((((............))))))	chr11:34493405-34493679(+)$1	1	156	179	24.4718
((((((...........))))))	chr2:191555005-191555335(+)$1	1	248	271	23.3945
((((((...........))))))	chr5:71515895-71516152(-)$1	1	214	237	23.9740
(((((............))))))	chr8:41367433-41367708(+)$1	1	2	25	24.0592
((.((............)).)))	chr11:47379979-47380232(-)$1	1	93	116	22.9656
.(((((...........))))).	chr12:118471833-118472107(-)$1	1	11	34	20.7728
((((.............))))))	chr1:54497376-54497657(-)$1	1	157	180	23.9896
.(((((...........))))).	chr7:6509200-6509485(-)$1	1	167	190	23.0039
(((((...........)))))))	chr8:54879142-54879433(-)$1	1	85	108	22.6590
((.(((...........))))))	chr3:5220358-5220600(+)$1	1	15	38	23.8818
(((((............))))))	chr16:20781206-20781495(+)$1	1	59	82	24.4718
(((..............)))...	chr4:103809373-103809641(+)$1	1	121	144	21.5002
((((.............))))))	chr11:65764928-65765186(-)$1	1	116	139	23.6130
..(((............)))...	chr11:87033647-87033930(+)$1	1	123	146	23.8563
((((((...........))))))	chr6:34213507-34213745(+)$1	1	103	126	23.3945
((((.............).))))	chr7:135612922-135613142(-)$1	1	115	138	22.9327
((((((...........))))))	chr18:55268179-55268426(-)$1	1	74	97	23.9740
(.(((...........)))..))	chr1:110566057-110566317(+)$1	1	122	145	22.1431
..(((............)))..)	chr3:33184364-33184636(+)$1	1	98	121	23.3486
(((((............))).))	chr6:37142176-37142395(+)$1	1	83	106	24.2838
.((((............))))))	chr11:59837895-59838167(+)$1	1	58	81	22.3724
(((((...........)))))..	chr20:463390-463633(-)$1	1	83	106	22.3444
(((..............))))((	chr16:75674047-75674347(-)$1	1	197	220	20.8988

#PSSM
f : 0.32	e : 0.17	g : 0.14	d : 0.06	! : 0.06	[ : 0.04	i : 0.04	c : 0.04	= : 0.01	J : 0.01	# : 0.01	b : 0.01	: : 0.01	$ : 0.01	
f : 0.31	e : 0.18	g : 0.14	d : 0.10	i : 0.04	! : 0.04	[ : 0.04	c : 0.04	= : 0.01	J : 0.01	# : 0.01	b : 0.01	
f : 0.28	e : 0.17	d : 0.14	c : 0.14	g : 0.12	[ : 0.06	i : 0.04	= : 0.01	! : 0.01	
f : 0.26	c : 0.15	e : 0.15	g : 0.12	d : 0.12	i : 0.04	b : 0.04	w : 0.04	= : 0.01	a : 0.01	
f : 0.23	c : 0.14	e : 0.12	g : 0.10	d : 0.09	v : 0.09	w : 0.07	i : 0.04	b : 0.04	= : 0.01	a : 0.01	
u : 0.35	f : 0.12	v : 0.12	t : 0.10	w : 0.09	e : 0.04	i : 0.03	d : 0.03	c : 0.03	g : 0.03	= : 0.01	
t : 0.42	u : 0.35	v : 0.12	w : 0.09	
t : 0.42	u : 0.35	v : 0.12	w : 0.09	
t : 0.42	u : 0.35	v : 0.12	w : 0.09	
t : 0.42	u : 0.35	v : 0.12	w : 0.09	
t : 0.42	u : 0.35	v : 0.12	w : 0.09	
t : 0.42	u : 0.35	v : 0.12	w : 0.09	
t : 0.42	u : 0.35	v : 0.12	w : 0.09	
t : 0.42	u : 0.35	v : 0.12	w : 0.09	
t : 0.42	u : 0.35	v : 0.12	w : 0.09	
t : 0.42	u : 0.35	v : 0.12	w : 0.09	
u : 0.35	t : 0.31	v : 0.12	w : 0.09	e : 0.04	d : 0.03	g : 0.01	c : 0.01	
f : 0.28	c : 0.15	d : 0.14	g : 0.10	e : 0.10	w : 0.04	b : 0.04	i : 0.03	v : 0.03	a : 0.03	= : 0.01	
f : 0.28	c : 0.17	d : 0.14	e : 0.14	g : 0.10	i : 0.04	b : 0.04	] : 0.03	w : 0.01	= : 0.01	
f : 0.28	e : 0.17	c : 0.15	d : 0.14	g : 0.12	i : 0.04	2 : 0.03	] : 0.03	= : 0.01	
f : 0.29	e : 0.18	g : 0.14	d : 0.10	] : 0.06	i : 0.04	2 : 0.04	c : 0.04	3 : 0.03	= : 0.01	4 : 0.01	
f : 0.37	e : 0.18	g : 0.15	i : 0.04	] : 0.04	3 : 0.04	c : 0.03	2 : 0.03	= : 0.01	d : 0.01	4 : 0.01	G : 0.01	: : 0.01	
f : 0.39	g : 0.15	e : 0.12	c : 0.06	i : 0.04	3 : 0.04	d : 0.03	] : 0.03	= : 0.01	4 : 0.01	6 : 0.01	2 : 0.01	G : 0.01	b : 0.01	: : 0.01	

#score	1473.647510233417
#seq	64
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_transcript_m2_run2.txt

#BEAR
eeeeeooooooeeeee	chr12:26985874-26986096(-)$1	222	74	90	9.0842
Eeeeeemmmmeeeee:	chr2:54874193-54874494(+)$1	301	11	27	10.3050
i[ddddmmmmdddd33	chr10:101996705-101996946(-)$1	241	156	172	6.4390
f[eeeeellleeeee]	chr17:19091320-19091530(+)$1	210	34	50	10.1670
f[eeeeellleeeee]	chr17:19093392-19093609(-)$1	217	77	93	10.1670
eeeeooooooeeeee]	chr1:19444252-19444503(-)$1	251	61	77	9.3697
heeeeemmmmeeeeef	chr16:89959071-89959307(+)$1	236	159	175	10.8012
[eeeeemmmmeeeee2	chrX:20154239-20154483(-)$1	244	15	31	11.8327
:eeeeemmmmeeeeed	chr9:117073829-117074115(+)$1	286	57	73	10.5165
[eeeeeooooooeeee	chr17:1665246-1665480(+)$1	234	15	31	9.2229
:eeeeemmmmeeeee:	chr2:232326431-232326673(-)$1	242	216	232	10.3980
[eeeeemmmmeeeeeb	chr1:19452997-19453249(-)$1	252	131	147	11.2521
f[eeeeellleeeee]	chr17:19091310-19091513(+)$1	203	44	60	10.1670
:eeeeemmmmeeeee:	chr17:80193762-80194054(+)$1	292	229	245	10.3980
[eeeeeooooooeeee	chr17:18965302-18965546(+)$1	244	6	22	9.2229
eeeeeooooooeeeee	chr2:232325278-232325512(-)$1	234	5	21	9.0842
a[eeeeellleeeee]	chr1:19484306-19484553(-)$1	247	208	224	10.3274
!eeeeemmmmeeeee3	chr9:117050890-117051131(+)$1	241	123	139	11.9279
#eeeeemmmmeeeee2	chr8:124381215-124381517(-)$1	302	244	260	11.7500
Feeeeemmmmeeeee:	chr22:36690062-36690303(-)$1	241	176	192	10.6859
:eeeeemmmmeeeee:	chr2:54856638-54856894(+)$1	256	166	182	10.3980
!eeeeemmmmeeeee2	chr20:60913185-60913422(-)$1	237	170	186	11.8479
[eeeeemmmmeeeee]	chr19:57325487-57325717(-)$1	230	2	18	12.0227
beeeeemmmmeeeee]	chr15:25330530-25330816(+)$1	286	100	116	11.6513
eeeeennnnneeeee]	chr9:712423-712691(+)$1	268	137	153	8.9661
beeeeemmmmeeeee]	chr21:47611929-47612176(-)$1	247	29	45	11.6513
eeeeennnnneeeee]	chr16:70696474-70696723(-)$1	249	164	180	8.9661
[eeeeemmmmeeeee]	chr6:144745101-144745314(+)$1	213	71	87	12.0227
:eeeeemmmmeeeee:	chr9:108328022-108328293(+)$1	271	94	110	10.3980
:eeeeemmmmeeeee:	chr20:60905444-60905667(-)$1	223	2	18	10.3980
!eeeeeooooooeeee	chr14:21860207-21860446(-)$1	239	176	192	9.2381
"eeeeellleeeee33	chr1:19490652-19490888(-)$1	236	208	224	9.5785
Geeeeemmmmeeeee:	chr10:101603535-101603757(+)$1	222	132	148	10.6878
:eeeeemmmmeeeee:	chr15:25330616-25330942(+)$1	326	307	323	10.3980
deeeeemmmmeeeeee	chr2:133015106-133015364(-)$1	258	122	138	11.0348
!eeeeemmmmeeeee2	chr11:62622040-62622257(-)$1	217	170	186	11.8479
f[eeeeellleeeee]	chr17:19091330-19091536(+)$1	206	24	40	10.1670
!eeeeemmmmeeeee2	chr20:60913049-60913287(-)$1	238	35	51	11.8479
:eeeeemmmmeeeee:	chr12:57567503-57567741(+)$1	238	139	155	10.3980
deeeeemmmmeeeee:	chr7:148711901-148712129(-)$1	228	67	83	10.7827
f[eeeeellleeeee]	chr17:19015762-19016025(-)$1	263	102	118	10.1670
eeeeeooooooeeeee	chr2:232319842-232320079(-)$1	237	198	214	9.0842
[eeeeemmmmeeeee]	chr20:60913524-60913760(-)$1	236	211	227	12.0227
!!eeeeellleeeee2	chr16:78247742-78247956(+)$1	214	86	102	10.2776
eeeeeammmma]eeee	chr3:58084337-58084594(+)$1	257	221	237	9.5393

#otherMatches

#Seq PSSM
UGGAGAGAAAACUUCA	chr12:26985874-26986096(-)$1	222	74	90	9.0842
CACUCCUUAAGGGGUA	chr2:54874193-54874494(+)$1	301	11	27	10.3050
ACUGUGCAGGCACAAC	chr10:101996705-101996946(-)$1	241	156	172	6.4390
uauaguguguuacuag	chr17:19091320-19091530(+)$1	210	34	50	10.1670
uauaguguguuacuag	chr17:19093392-19093609(-)$1	217	77	93	10.1670
UGAAAAUGUGUUCAUG	chr1:19444252-19444503(-)$1	251	61	77	9.3697
GGGCCCUCAGGGGCCA	chr16:89959071-89959307(+)$1	236	159	175	10.8012
AAGGCUUUCCGGUCUA	chrX:20154239-20154483(-)$1	244	15	31	11.8327
AGUAGAGAGAUUUACC	chr9:117073829-117074115(+)$1	286	57	73	10.5165
CGCUUUAAGAAAGGAG	chr17:1665246-1665480(+)$1	234	15	31	9.2229
AUGGCAAGAAUGCCAA	chr2:232326431-232326673(-)$1	242	216	232	10.3980
CAGCUCUACUGAGCUC	chr1:19452997-19453249(-)$1	252	131	147	11.2521
uauaguguguuacuag	chr17:19091310-19091513(+)$1	203	44	60	10.1670
CGCCUUCCCCAAGGCC	chr17:80193762-80194054(+)$1	292	229	245	10.3980
agagagguagcguuuu	chr17:18965302-18965546(+)$1	244	6	22	9.2229
AGCCAAGAACGUGGCu	chr2:232325278-232325512(-)$1	234	5	21	9.0842
CCGCCAACAUUUGGCU	chr1:19484306-19484553(-)$1	247	208	224	10.3274
ACCGGGAGACCCUGGG	chr9:117050890-117051131(+)$1	241	123	139	11.9279
UUUAUGACAACAUAAU	chr8:124381215-124381517(-)$1	302	244	260	11.7500
CGCCAGGACCCUGGCG	chr22:36690062-36690303(-)$1	241	176	192	10.6859
UCCAGGACACUCUGGC	chr2:54856638-54856894(+)$1	256	166	182	10.3980
GAGGCCCGUGGGCCUG	chr20:60913185-60913422(-)$1	237	170	186	11.8479
agcugcagcagcagca	chr19:57325487-57325717(-)$1	230	2	18	12.0227
UGCUCUUACAGGGGCU	chr15:25330530-25330816(+)$1	286	100	116	11.6513
GUCUGCGAAACAGGCA	chr9:712423-712691(+)$1	268	137	153	8.9661
UCCUCUUCAGGGGGGA	chr21:47611929-47612176(-)$1	247	29	45	11.6513
GUCCUAUGGCAGGAUG	chr16:70696474-70696723(-)$1	249	164	180	8.9661
CUGACUUUGGGGUUAC	chr6:144745101-144745314(+)$1	213	71	87	12.0227
cagaauauacauucuu	chr9:108328022-108328293(+)$1	271	94	110	10.3980
CGUGGUCUUCACCACC	chr20:60905444-60905667(-)$1	223	2	18	10.3980
UGUAUGUUUUCUUGUA	chr14:21860207-21860446(-)$1	239	176	192	9.2381
AGCUCAAAGUGAGUAC	chr1:19490652-19490888(-)$1	236	208	224	9.5785
ACUGGAAAAAUCCAGG	chr10:101603535-101603757(+)$1	222	132	148	10.6878
UUCCUUGGAGGAGGAU	chr15:25330616-25330942(+)$1	326	307	323	10.3980
UGAGAAAGCCUUCUCU	chr2:133015106-133015364(-)$1	258	122	138	11.0348
UGUUUAUGAAUAAGCU	chr11:62622040-62622257(-)$1	217	170	186	11.8479
uauaguguguuacuag	chr17:19091330-19091536(+)$1	206	24	40	10.1670
GAGGCCCGUGGGCCUG	chr20:60913049-60913287(-)$1	238	35	51	11.8479
CUGGCCUGCAGGCCAC	chr12:57567503-57567741(+)$1	238	139	155	10.3980
CCAAAGAGAACUUUGA	chr7:148711901-148712129(-)$1	228	67	83	10.7827
uauaguguguuacuag	chr17:19015762-19016025(-)$1	263	102	118	10.1670
CUUUUCCAUUUGAAAG	chr2:232319842-232320079(-)$1	237	198	214	9.0842
AGGGUUCUACGGCCCC	chr20:60913524-60913760(-)$1	236	211	227	12.0227
AUGUCACGCUGUGGCC	chr16:78247742-78247956(+)$1	214	86	102	10.2776
UGGCCCUCACGUGGUC	chr3:58084337-58084594(+)$1	257	221	237	9.5393

#DB
(((((......)))))	chr12:26985874-26986096(-)$1	1	74	90	9.0842
((((((....))))).	chr2:54874193-54874494(+)$1	1	11	27	10.3050
(.((((....))))..	chr10:101996705-101996946(-)$1	1	156	172	6.4390
(.(((((...))))).	chr17:19091320-19091530(+)$1	1	34	50	10.1670
(.(((((...))))).	chr17:19093392-19093609(-)$1	1	77	93	10.1670
((((......))))).	chr1:19444252-19444503(-)$1	1	61	77	9.3697
)(((((....)))))(	chr16:89959071-89959307(+)$1	1	159	175	10.8012
.(((((....))))).	chrX:20154239-20154483(-)$1	1	15	31	11.8327
.(((((....)))))(	chr9:117073829-117074115(+)$1	1	57	73	10.5165
.(((((......))))	chr17:1665246-1665480(+)$1	1	15	31	9.2229
.(((((....))))).	chr2:232326431-232326673(-)$1	1	216	232	10.3980
.(((((....))))))	chr1:19452997-19453249(-)$1	1	131	147	11.2521
(.(((((...))))).	chr17:19091310-19091513(+)$1	1	44	60	10.1670
.(((((....))))).	chr17:80193762-80194054(+)$1	1	229	245	10.3980
.(((((......))))	chr17:18965302-18965546(+)$1	1	6	22	9.2229
(((((......)))))	chr2:232325278-232325512(-)$1	1	5	21	9.0842
(.(((((...))))).	chr1:19484306-19484553(-)$1	1	208	224	10.3274
.(((((....))))).	chr9:117050890-117051131(+)$1	1	123	139	11.9279
.(((((....))))).	chr8:124381215-124381517(-)$1	1	244	260	11.7500
)(((((....))))).	chr22:36690062-36690303(-)$1	1	176	192	10.6859
.(((((....))))).	chr2:54856638-54856894(+)$1	1	166	182	10.3980
.(((((....))))).	chr20:60913185-60913422(-)$1	1	170	186	11.8479
.(((((....))))).	chr19:57325487-57325717(-)$1	1	2	18	12.0227
((((((....))))).	chr15:25330530-25330816(+)$1	1	100	116	11.6513
(((((.....))))).	chr9:712423-712691(+)$1	1	137	153	8.9661
((((((....))))).	chr21:47611929-47612176(-)$1	1	29	45	11.6513
(((((.....))))).	chr16:70696474-70696723(-)$1	1	164	180	8.9661
.(((((....))))).	chr6:144745101-144745314(+)$1	1	71	87	12.0227
.(((((....))))).	chr9:108328022-108328293(+)$1	1	94	110	10.3980
.(((((....))))).	chr20:60905444-60905667(-)$1	1	2	18	10.3980
.(((((......))))	chr14:21860207-21860446(-)$1	1	176	192	9.2381
.(((((...)))))..	chr1:19490652-19490888(-)$1	1	208	224	9.5785
((((((....))))).	chr10:101603535-101603757(+)$1	1	132	148	10.6878
.(((((....))))).	chr15:25330616-25330942(+)$1	1	307	323	10.3980
)(((((....)))))(	chr2:133015106-133015364(-)$1	1	122	138	11.0348
.(((((....))))).	chr11:62622040-62622257(-)$1	1	170	186	11.8479
(.(((((...))))).	chr17:19091330-19091536(+)$1	1	24	40	10.1670
.(((((....))))).	chr20:60913049-60913287(-)$1	1	35	51	11.8479
.(((((....))))).	chr12:57567503-57567741(+)$1	1	139	155	10.3980
)(((((....))))).	chr7:148711901-148712129(-)$1	1	67	83	10.7827
(.(((((...))))).	chr17:19015762-19016025(-)$1	1	102	118	10.1670
(((((......)))))	chr2:232319842-232320079(-)$1	1	198	214	9.0842
.(((((....))))).	chr20:60913524-60913760(-)$1	1	211	227	12.0227
..(((((...))))).	chr16:78247742-78247956(+)$1	1	86	102	10.2776
((((((....).))))	chr3:58084337-58084594(+)$1	1	221	237	9.5393

#PSSM
: : 0.17	e : 0.15	[ : 0.15	! : 0.13	f : 0.11	b : 0.04	d : 0.04	E : 0.02	i : 0.02	h : 0.02	a : 0.02	# : 0.02	F : 0.02	" : 0.02	G : 0.02	
e : 0.82	[ : 0.15	! : 0.02	
e : 0.97	d : 0.02	
e : 0.97	d : 0.02	
e : 0.95	d : 0.02	o : 0.02	
e : 0.82	o : 0.08	n : 0.04	d : 0.02	a : 0.02	
m : 0.62	o : 0.15	e : 0.15	n : 0.04	l : 0.02	
m : 0.62	l : 0.17	o : 0.15	n : 0.04	
m : 0.62	l : 0.17	o : 0.15	n : 0.04	
m : 0.62	o : 0.15	l : 0.15	n : 0.04	e : 0.02	
e : 0.82	o : 0.13	d : 0.02	a : 0.02	
e : 0.88	o : 0.06	d : 0.02	] : 0.02	
e : 0.97	d : 0.02	
e : 0.97	d : 0.02	
e : 0.95	3 : 0.04	
] : 0.31	: : 0.24	e : 0.17	2 : 0.13	3 : 0.06	f : 0.02	d : 0.02	b : 0.02	

#score	468.5146246315069
#seq	45
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_UTR_m2_run2.txt

#BEAR
e[bb[ccccccmmmmccc]cccbb]ee	chr13:50571174-50571467(+)$1	293	37	64	11.0531
ggg[ccc[cccmmmmccc]cccggggg	chr11:67810675-67810936(+)$1	261	153	180	12.4880
bb[eeeee[bbmmmmbb]eeeee]bb]	chr9:140347334-140347564(-)$1	230	14	41	11.3719
ggg[ccc[cccmmmmcccccc]ggggg	chr17:60556496-60556861(+)$1	365	26	53	12.0255
dddccc!!cccmmmmccc22ccc]ddd	chr1:156351927-156352197(+)$1	270	224	251	11.3497
hh!!dddd[bbmmmmbb]dddd22hhh	chr20:57226350-57226602(+)$1	252	200	227	11.0238
####ccc[cccmmmmccc]cccbbccc	chr16:88718714-88718961(-)$1	247	46	73	12.4778
bb[eeeee[bbmmmmbb22eeeee]bb	chr5:179050391-179050697(-)$1	306	268	295	11.2427
eeeccc[ddddmmmmddddccc]eeee	chr2:128180682-128180991(+)$1	309	5	32	9.1281
!!ccc[eeeeemmmmeeeee]ccc22d	chr19:54024502-54024758(+)$1	256	155	182	9.5793
ff!!a!!a[bbmmmmbba333a22fff	chr14:54418396-54418665(-)$1	269	237	264	12.7074
ffffff"""bbmmmmbb333ffffff:	chr13:50571681-50571937(+)$1	256	203	230	10.9480
c!!bb[bb[bbmmmmbb]bb]bb333c	chr12:7023720-7023969(+)$1	249	43	70	11.1835
bb[eeeee[bbmmmmbb]eeeee]bb]	chr9:140347364-140347588(-)$1	224	38	65	11.3719
"""bbffffffmmmmffffff]bb333	chr19:18668655-18668997(+)$1	342	262	289	10.1442
!dddd!!a[bbmmmmbbaddddccc]a	chr16:88724086-88724328(-)$1	242	62	89	11.8421
ffff####cccmmmmccc4444fffff	chr20:56140285-56140521(+)$1	236	121	148	11.1053
!!dddd"""bblllbb333dddd]iii	chr11:70265862-70266136(+)$1	274	81	108	9.4700
ddd!!ffffffmmmmffffff4444dd	chr16:72142227-72142502(+)$1	275	100	127	9.8846
cc"""ffffffmmmmffffffccc]bb	chr14:35099049-35099318(-)$1	269	178	205	10.4774
###dddd[cccmmmmcccddddeeeee	chr6:74230519-74230781(-)$1	262	50	77	11.1185
ccc[ccc[cccmmmmccc]ccc]ccc7	chr17:77078044-77078299(+)$1	255	25	52	11.8980

#otherMatches

#Seq PSSM
UGCGGUCCCUGUAGUUGGAGGACGGGC	chr13:50571174-50571467(+)$1	293	37	64	11.0531
GGCCGCCAGCUUUGUGGCAGGUGCCGU	chr11:67810675-67810936(+)$1	261	153	180	12.4880
UGUGGCCUGCGACACCGAAGGCUUCGU	chr9:140347334-140347564(-)$1	230	14	41	11.3719
UUGCGGCGCUCAGGAGAGGCCCCGGCU	chr17:60556496-60556861(+)$1	365	26	53	12.0255
ugccuuccugguccucuaucaagugca	chr1:156351927-156352197(+)$1	270	224	251	11.3497
CUCCGGUUGUCCAAAGAGGGCCUAGGC	chr20:57226350-57226602(+)$1	252	200	227	11.0238
GCAUGCCGCUUGGAGAAGGGGUGGCCU	chr16:88718714-88718961(-)$1	247	46	73	12.4778
GGAGGCGGAGCGGAAGCGGCCGCCGCC	chr5:179050391-179050697(-)$1	306	268	295	11.2427
GCAUCGGCAGCUUCAGCUGCGACUGCC	chr2:128180682-128180991(+)$1	309	5	32	9.1281
GUGACUGAGAUAAUUGUCUUCGUCUGU	chr19:54024502-54024758(+)$1	256	155	182	9.5793
AUUUGCAGAGCUGCCGCCGAACUUAUU	chr14:54418396-54418665(-)$1	269	237	264	12.7074
UUGUAGGAGACAGAGGUAAACUACAAU	chr13:50571681-50571937(+)$1	256	203	230	10.9480
gccgccgucgccaccgccaccgccacc	chr12:7023720-7023969(+)$1	249	43	70	11.1835
UGUGGCCUGCGACACCGAAGGCUUCGU	chr9:140347364-140347588(-)$1	224	38	65	11.3719
ACGGGCUGGAUCUGGAUCCGGAUCAGG	chr19:18668655-18668997(+)$1	342	262	289	10.1442
CCAGAAAGUGCUUCUGCCUCUGUGCCC	chr16:88724086-88724328(-)$1	242	62	89	11.8421
CAAAAUCAUCAUGCAUGACCCCUUUGC	chr20:56140285-56140521(+)$1	236	121	148	11.1053
AAGCACGAGUCCCAGAAAGGUGUCUUC	chr11:70265862-70266136(+)$1	274	81	108	9.4700
AGGAAAGGAGGGCUCCCUCCUGGUGCC	chr16:72142227-72142502(+)$1	275	100	127	9.8846
GGACUUCCUCUCAGAAGAGGACCGCGG	chr14:35099049-35099318(-)$1	269	178	205	10.4774
AGAACACAGGUAAGUGCCGUGUGUGGU	chr6:74230519-74230781(-)$1	262	50	77	11.1185
CCGGGCUGAUGUGUACGUGGGCGUGGA	chr17:77078044-77078299(+)$1	255	25	52	11.8980

#DB
(.((.((((((....))).))))).))	chr13:50571174-50571467(+)$1	1	37	64	11.0531
(((.(((.(((....))).))))))))	chr11:67810675-67810936(+)$1	1	153	180	12.4880
((.(((((.((....)).))))).)).	chr9:140347334-140347564(-)$1	1	14	41	11.3719
(((.(((.(((....)))))).)))))	chr17:60556496-60556861(+)$1	1	26	53	12.0255
((((((..(((....)))..))).)))	chr1:156351927-156352197(+)$1	1	224	251	11.3497
((..((((.((....)).))))..)))	chr20:57226350-57226602(+)$1	1	200	227	11.0238
....(((.(((....))).))))))))	chr16:88718714-88718961(-)$1	1	46	73	12.4778
((.(((((.((....))..))))).))	chr5:179050391-179050697(-)$1	1	268	295	11.2427
((((((.((((....))))))).))))	chr2:128180682-128180991(+)$1	1	5	32	9.1281
..(((.(((((....))))).)))..)	chr19:54024502-54024758(+)$1	1	155	182	9.5793
((..(..(.((....)))...)..)))	chr14:54418396-54418665(-)$1	1	237	264	12.7074
((((((...((....))...)))))).	chr13:50571681-50571937(+)$1	1	203	230	10.9480
(..((.((.((....)).)).))...)	chr12:7023720-7023969(+)$1	1	43	70	11.1835
((.(((((.((....)).))))).)).	chr9:140347364-140347588(-)$1	1	38	65	11.3719
...((((((((....)))))).))...	chr19:18668655-18668997(+)$1	1	262	289	10.1442
.((((..(.((....)))))))))).)	chr16:88724086-88724328(-)$1	1	62	89	11.8421
((((....(((....)))....)))))	chr20:56140285-56140521(+)$1	1	121	148	11.1053
..((((...((...))...)))).)))	chr11:70265862-70266136(+)$1	1	81	108	9.4700
(((..((((((....))))))....))	chr16:72142227-72142502(+)$1	1	100	127	9.8846
((...((((((....))))))))).))	chr14:35099049-35099318(-)$1	1	178	205	10.4774
...((((.(((....))))))))))))	chr6:74230519-74230781(-)$1	1	50	77	11.1185
(((.(((.(((....))).))).))).	chr17:77078044-77078299(+)$1	1	25	52	11.8980

#PSSM
b : 0.13	! : 0.13	f : 0.13	c : 0.13	e : 0.09	g : 0.09	d : 0.09	# : 0.09	h : 0.04	" : 0.04	
b : 0.13	d : 0.13	! : 0.13	f : 0.13	g : 0.09	# : 0.09	c : 0.09	[ : 0.04	h : 0.04	e : 0.04	" : 0.04	
d : 0.18	[ : 0.13	! : 0.13	g : 0.09	# : 0.09	c : 0.09	f : 0.09	" : 0.09	b : 0.04	e : 0.04	
b : 0.13	[ : 0.13	e : 0.13	c : 0.13	! : 0.13	d : 0.13	f : 0.09	# : 0.04	" : 0.04	
c : 0.31	d : 0.18	e : 0.13	b : 0.09	[ : 0.04	a : 0.04	f : 0.04	# : 0.04	! : 0.04	" : 0.04	
c : 0.31	f : 0.18	e : 0.13	d : 0.13	[ : 0.09	! : 0.09	# : 0.04	
c : 0.22	e : 0.18	! : 0.13	f : 0.13	d : 0.09	" : 0.09	[ : 0.04	b : 0.04	# : 0.04	
[ : 0.22	e : 0.18	f : 0.13	d : 0.09	a : 0.09	" : 0.09	c : 0.04	! : 0.04	b : 0.04	# : 0.04	
c : 0.36	[ : 0.31	f : 0.13	" : 0.09	d : 0.04	e : 0.04	
b : 0.40	c : 0.36	f : 0.13	d : 0.04	e : 0.04	
b : 0.40	c : 0.36	f : 0.13	d : 0.04	e : 0.04	
m : 0.95	l : 0.04	
m : 0.95	l : 0.04	
m : 0.95	l : 0.04	
m : 0.95	b : 0.04	
b : 0.40	c : 0.36	f : 0.13	d : 0.04	e : 0.04	
c : 0.36	b : 0.36	f : 0.13	d : 0.04	e : 0.04	3 : 0.04	
c : 0.36	] : 0.18	f : 0.13	a : 0.09	3 : 0.09	2 : 0.04	d : 0.04	e : 0.04	
] : 0.18	d : 0.18	e : 0.13	3 : 0.13	f : 0.13	2 : 0.09	c : 0.04	b : 0.04	4 : 0.04	
c : 0.27	e : 0.18	d : 0.18	f : 0.13	3 : 0.09	2 : 0.04	b : 0.04	4 : 0.04	
c : 0.31	d : 0.18	f : 0.18	e : 0.13	] : 0.09	3 : 0.04	4 : 0.04	
c : 0.36	d : 0.18	e : 0.13	] : 0.09	4 : 0.09	a : 0.04	f : 0.04	b : 0.04	
b : 0.18	e : 0.18	c : 0.18	g : 0.09	2 : 0.09	] : 0.09	f : 0.09	d : 0.04	4 : 0.04	
] : 0.18	c : 0.18	b : 0.13	e : 0.13	g : 0.09	2 : 0.09	f : 0.09	3 : 0.04	4 : 0.04	
] : 0.13	c : 0.13	f : 0.13	g : 0.09	b : 0.09	e : 0.09	3 : 0.09	d : 0.04	h : 0.04	2 : 0.04	i : 0.04	4 : 0.04	
b : 0.18	e : 0.13	f : 0.13	g : 0.09	d : 0.09	c : 0.09	3 : 0.09	h : 0.04	2 : 0.04	] : 0.04	i : 0.04	
e : 0.13	d : 0.13	g : 0.09	] : 0.09	c : 0.09	b : 0.09	f : 0.09	h : 0.04	: : 0.04	3 : 0.04	a : 0.04	i : 0.04	7 : 0.04	

#score	243.8919932718046
#seq	22
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_CDS_m1_run1.txt

#BEAR
ffffff!!ffffff####a!!bb####eeeeea[eeeee[	chrM:14201-14410(-)$1	209	3	43	43.6406
ffffff!!ffffff####a!!bb####eeeeea[eeeee[	chrM:14247-14494(-)$1	247	87	127	43.6406
ffffff!!ffffff####a!!bb####eeeeea[eeeee[	chrM:14210-14418(-)$1	208	11	51	43.6406
ffffff!!ffffff####a!!bb####eeeeea[eeeee[	chrM:14218-14424(-)$1	206	17	57	43.6406
ffffff!!ffffff####a!!bb####eeeeea[eeeee[	chrM:14226-14447(-)$1	221	40	80	43.6406

#otherMatches

#Seq PSSM
GUGAGUGUUUUAGUGGGGUUAGCGAUGGAGGUAGGAUUGG	chrM:14201-14410(-)$1	209	3	43	43.6406
GUGAGUGUUUUAGUGGGGUUAGCGAUGGAGGUAGGAUUGG	chrM:14247-14494(-)$1	247	87	127	43.6406
GUGAGUGUUUUAGUGGGGUUAGCGAUGGAGGUAGGAUUGG	chrM:14210-14418(-)$1	208	11	51	43.6406
GUGAGUGUUUUAGUGGGGUUAGCGAUGGAGGUAGGAUUGG	chrM:14218-14424(-)$1	206	17	57	43.6406
GUGAGUGUUUUAGUGGGGUUAGCGAUGGAGGUAGGAUUGG	chrM:14226-14447(-)$1	221	40	80	43.6406

#DB
((((((..((((((....(..((....((((((.(((((.	chrM:14201-14410(-)$1	1	3	43	43.6406
((((((..((((((....(..((....((((((.(((((.	chrM:14247-14494(-)$1	1	87	127	43.6406
((((((..((((((....(..((....((((((.(((((.	chrM:14210-14418(-)$1	1	11	51	43.6406
((((((..((((((....(..((....((((((.(((((.	chrM:14218-14424(-)$1	1	17	57	43.6406
((((((..((((((....(..((....((((((.(((((.	chrM:14226-14447(-)$1	1	40	80	43.6406

#PSSM
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
! : 1.00	
! : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
# : 1.00	
# : 1.00	
# : 1.00	
# : 1.00	
a : 1.00	
! : 1.00	
! : 1.00	
b : 1.00	
b : 1.00	
# : 1.00	
# : 1.00	
# : 1.00	
# : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
a : 1.00	
[ : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
[ : 1.00	

#score	218.20317443899995
#seq	5
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_transcript_m1_run2.txt

#BEAR
============[eeeee[ccc!!iiiiiiiii[ccc""	chr7:73099543-73099814(+)$1	271	29	68	17.7715
====="""ggggggg[bbnnnnnbb]ggggggg======	chr16:50610605-50610815(+)$1	210	61	100	17.0153
ggggggg[eeeee!!cccmmmmccc333eeeeegggggg	chr10:102733885-102734150(+)$1	265	191	230	14.4807
==========[a!!eeeee[==========!!=======	chr4:39976344-39976641(-)$1	297	143	182	21.0072
==================mmmm=================	chr2:109168331-109168590(+)$1	259	7	46	25.1332
dccciiiiiiiii[bbbbmmmmbb]bbiiiiiiiii]cc	chr10:97900451-97900731(+)$1	280	178	217	16.6811
=======[==========mmmm==========]======	chr13:107195898-107196205(-)$1	307	234	273	24.7887
==========!!=================[=========	chr16:87391091-87391336(-)$1	245	4	43	23.9684
gggggg[ccc[ccc[cccmmmmccc]cccccc]gggggg	chr7:5412198-5412453(-)$1	255	134	173	15.4808
=======================================	chr19:23550913-23551158(-)$1	245	58	97	24.4714
!ccc####ggggggg!!ammmma22ggggggg4444ccc	chr19:55701022-55701299(-)$1	277	25	64	15.3216
=======================================	chr5:80361044-80361312(+)$1	268	4	43	24.4714
gggg[ggggggg"""cccmmmmcccggggggg333gggg	chr2:242652192-242652459(+)$1	267	29	68	17.1681
==========%%%%%%ccclllccc4444==========	chr11:2160120-2160337(-)$1	217	82	121	16.8958
===================]===================	chr5:68472292-68472602(+)$1	310	234	273	24.1840
========$$$$$eeeeemmmmeeeee============	chr4:39621479-39621766(-)$1	287	79	118	19.0637
a[=================[bb[==============[b	chr2:175083700-175083949(-)$1	249	17	56	21.5683
ccceeeee[bb[=============[============[	chr2:101906257-101906513(-)$1	256	103	142	19.0182
=========%%%%%%cccmmmmccc]=============	chr14:23787599-23787838(+)$1	239	186	225	18.2334
ccc===========bbrrrrrrrrrbb]===========	chr16:28968729-28969012(+)$1	283	119	158	17.7332
$$ggggggg"""ddddoooooodddd333ggggggg444	chr16:70577669-70577886(+)$1	217	16	55	13.9560
ggggg[============nnnnn============]ggg	chr19:42371168-42371435(+)$1	267	180	219	21.0789
==============[a[dddd[iiiiiiiii[ccc[===	chr1:151198679-151198956(+)$1	277	135	174	19.1745
cc!!ggggggg"""ddddmmmmddddggggggg4444cc	chr9:19341233-19341470(+)$1	237	108	147	14.9101
[=================mmmm=================	chr9:4728647-4728880(-)$1	233	12	51	25.0420
==================]===========]========	chr17:34879186-34879417(-)$1	231	81	120	23.9267
===========eeeee[aooooooa]eeeee]=======	chr16:89190817-89191177(+)$1	360	314	353	18.3881
==================mmmm=================	chr10:77452224-77452520(+)$1	296	75	114	25.1332
=======================================	chr6:43101961-43102275(+)$1	314	64	103	24.4714
[ggggggg[===========[================$$	chr7:75566387-75566685(+)$1	298	11	50	21.2240
:ccc!!============mmmm============22ccc	chr1:12662266-12662521(-)$1	255	189	228	20.2459
$$$$$ccc"""ccc[cccmmmmcccccc333ccc22ggg	chr5:137803447-137803736(+)$1	289	246	285	13.5746
==========[ccc[==================!!iiii	chr1:31471965-31472257(-)$1	292	41	80	22.3006
[bb[ggggggg[ggggggg[==================d	chr4:2560256-2560518(+)$1	262	122	161	18.9514
=================[a!!bb!!bb[a!!ccc!!ggg	chrX:73428192-73428456(-)$1	264	123	162	16.8889
===============22bb]a]iiiiiiiii:iiiiiii	chr4:152210919-152211178(-)$1	259	110	149	18.5745
ccc[============[aooooooa============]c	chr5:170828134-170828418(+)$1	284	154	193	21.7451
effffff[cccgggggggmmmmggggggg333ccc]fff	chr4:773495-773746(-)$1	251	130	169	13.6856
==========bb[ddddnnnnndddd]bb22========	chr20:18676183-18676473(+)$1	290	174	213	15.7719
gggg####bb[gggggggmmmmggggggg]bb]gggggg	chr17:60048780-60049065(-)$1	285	98	137	15.7242
###dddd[===========lll===========dddd55	chr1:12649498-12649783(-)$1	285	149	188	16.8638
==========[================[===========	chr10:34869073-34869326(-)$1	253	83	122	24.1445

#otherMatches

#Seq PSSM
gcacuccagccuuggcgacagagugagacccugacucaa	chr7:73099543-73099814(+)$1	271	29	68	17.7715
UUUUUUAAAGAAUGACUUAUAAAAACUCAUUUUGGGAAA	chr16:50610605-50610815(+)$1	210	61	100	17.0153
ccaaguaugcuggcgugcaccuguagucccagcuacuug	chr10:102733885-102734150(+)$1	265	191	230	14.4807
ucggccucccaauaugcugcgauuacaggugugagccac	chr4:39976344-39976641(-)$1	297	143	182	21.0072
auguguauauacauguauauauguauauguguguauaug	chr2:109168331-109168590(+)$1	259	7	46	25.1332
cgaggcuguaaugagccguaauugugccauugcagcacu	chr10:97900451-97900731(+)$1	280	178	217	16.6811
ACUUUUUGuuuuuuuauauauuuauaaaaaaaGAAAAAG	chr13:107195898-107196205(-)$1	307	234	273	24.7887
gugaucugcccaucucggccucccagaguucugggauua	chr16:87391091-87391336(-)$1	245	4	43	23.9684
ggcugccgugcaguggugccaucauagcucacugcagcc	chr7:5412198-5412453(-)$1	255	134	173	15.4808
accuugugauccaccuaucucagccucccaaagugcugg	chr19:23550913-23551158(-)$1	245	58	97	24.4714
cccucccaucucagccuccccaguagcugggaccacagg	chr19:55701022-55701299(-)$1	277	25	64	15.3216
agAGCCUGGAAGUAAAAUACACuguauucauuuucuauu	chr5:80361044-80361312(+)$1	268	4	43	24.4714
cuugagcccaggaaucugagaccagucugggcaaccaag	chr2:242652192-242652459(+)$1	267	29	68	17.1681
GGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGCCC	chr11:2160120-2160337(-)$1	217	82	121	16.8958
gcugggugcaguggcuuacaucuguaaucccagcacuuu	chr5:68472292-68472602(+)$1	310	234	273	24.1840
ugcccagcAAAAAUAUUUUUUUAAGUAGUUggguguggu	chr4:39621479-39621766(-)$1	287	79	118	19.0637
ugccaaagugcugggauuacagucaugagccaccguguc	chr2:175083700-175083949(-)$1	249	17	56	21.5683
uggccucugaaagugcugggauuacaggcaugagccacc	chr2:101906257-101906513(-)$1	256	103	142	19.0182
ugggcagggacuacaggcacacgccacuuugcccagcua	chr14:23787599-23787838(+)$1	239	186	225	18.2334
agcgacuugggaggcugaugcaagaggaucuucugaguc	chr16:28968729-28969012(+)$1	283	119	158	17.7332
cauggaucuuuuugcuagccaaagcaucuggauccgauc	chr16:70577669-70577886(+)$1	217	16	55	13.9560
aaguauaauauuugcauauauccuauguagauguuuuac	chr19:42371168-42371435(+)$1	267	180	219	21.0789
ccucccaaagugcuaguauuacaggugugagccaccgca	chr1:151198679-151198956(+)$1	277	135	174	19.1745
gcucucucgcccaggcugagugcaguggcgagaacaugu	chr9:19341233-19341470(+)$1	237	108	147	14.9101
guauauauauauauauauauauauauauauauauauGua	chr9:4728647-4728880(-)$1	233	12	51	25.0420
uugccccauuuuuucacuuguuuaguuuuuauauaccau	chr17:34879186-34879417(-)$1	231	81	120	23.9267
CAUAUACGUGUGUGUUACCUGUGUGCAACACUGCAUGUG	chr16:89190817-89191177(+)$1	360	314	353	18.3881
uauacacauauacauauguauaCgugugugugugugugu	chr10:77452224-77452520(+)$1	296	75	114	25.1332
cucggccuccuaaagugcugggauuaugggugugagcug	chr6:43101961-43102275(+)$1	314	64	103	24.4714
acucccaaagugcugggauuacaggcgugagccaccgca	chr7:75566387-75566685(+)$1	298	11	50	21.2240
GUGGCACAGCCCCUGUCUUCCCAGGCAGGGGCUGGUCCA	chr1:12662266-12662521(-)$1	255	189	228	20.2459
CCAACUCCUUCAGCGCCUCCACAGGGCUUUCGGACAUGA	chr5:137803447-137803736(+)$1	289	246	285	13.5746
cucucaaagugcugggauuacaggugugagccaccgcac	chr1:31471965-31472257(-)$1	292	41	80	22.3006
augacugggaucacaggcgggagccacuguaccuagcUG	chr4:2560256-2560518(+)$1	262	122	161	18.9514
ggccucccaaagugcugcgucuacaggcgcaagccacug	chrX:73428192-73428456(-)$1	264	123	162	16.8889
uuagagauggggucucccuguuuugcccaggcuggucuu	chr4:152210919-152211178(-)$1	259	110	149	18.5745
gagguggagugcagugagauugcaccacugcacuccagc	chr5:170828134-170828418(+)$1	284	154	193	21.7451
aaggcuggagugcaauggugcgcuguugccuugcugcag	chr4:773495-773746(-)$1	251	130	169	13.6856
aggcuggagugcaauggugcagucauagcucacuucagc	chr20:18676183-18676473(+)$1	290	174	213	15.7719
AGAUGGUAGCCggcgugguggcucacgccuguaaucuua	chr17:60048780-60049065(-)$1	285	98	137	15.7242
ucacaccuguaauucaccauguuggUGAAUUauggugaa	chr1:12649498-12649783(-)$1	285	149	188	16.8638
gugaucuaccugcuuuggccucccaaaaugcugggauug	chr10:34869073-34869326(-)$1	253	83	122	24.1445

#DB
((((((((((((.(((((.(((..(((((((((.(((..	chr7:73099543-73099814(+)$1	1	29	68	17.7715
(((((...(((((((.((.....)).)))))))))))))	chr16:50610605-50610815(+)$1	1	61	100	17.0153
(((((((.(((((..(((....)))...)))))))))))	chr10:102733885-102734150(+)$1	1	191	230	14.4807
((((((((((.(..(((((.((((((((((..(((((((	chr4:39976344-39976641(-)$1	1	143	182	21.0072
((((((((((((((((((....)))))))))))))))))	chr2:109168331-109168590(+)$1	1	7	46	25.1332
(((((((((((((.((((....)).))))))))))).))	chr10:97900451-97900731(+)$1	1	178	217	16.6811
(((((((.((((((((((....)))))))))).))))))	chr13:107195898-107196205(-)$1	1	234	273	24.7887
((((((((((..(((((((((((((((((.(((((((((	chr16:87391091-87391336(-)$1	1	4	43	23.9684
((((((.(((.(((.(((....))).)))))).))))))	chr7:5412198-5412453(-)$1	1	134	173	15.4808
(((((((((((((((((((((((((((((((((((((((	chr19:23550913-23551158(-)$1	1	58	97	24.4714
.(((....(((((((..(....)..)))))))....)))	chr19:55701022-55701299(-)$1	1	25	64	15.3216
(((((((((((((((((((((((((((((((((((((((	chr5:80361044-80361312(+)$1	1	4	43	24.4714
((((.(((((((...(((....))))))))))...))))	chr2:242652192-242652459(+)$1	1	29	68	17.1681
((((((((((......(((...)))....))))))))))	chr11:2160120-2160337(-)$1	1	82	121	16.8958
))))))))))))))))))).)))))))))))))))))))	chr5:68472292-68472602(+)$1	1	234	273	24.1840
((((((((.....(((((....)))))))))))))))))	chr4:39621479-39621766(-)$1	1	79	118	19.0637
(.(((((((((((((((((.((.((((((((((((((.(	chr2:175083700-175083949(-)$1	1	17	56	21.5683
)))(((((.((.(((((((((((((.((((((((((((.	chr2:101906257-101906513(-)$1	1	103	142	19.0182
(((((((((......(((....))).)))))))))))))	chr14:23787599-23787838(+)$1	1	186	225	18.2334
((((((((((((((((.........)).)))))))))))	chr16:28968729-28969012(+)$1	1	119	158	17.7332
..(((((((...((((......))))...)))))))...	chr16:70577669-70577886(+)$1	1	16	55	13.9560
(((((.((((((((((((.....)))))))))))).)))	chr19:42371168-42371435(+)$1	1	180	219	21.0789
((((((((((((((.(.((((.(((((((((.(((.(((	chr1:151198679-151198956(+)$1	1	135	174	19.1745
((..(((((((...((((....)))))))))))....))	chr9:19341233-19341470(+)$1	1	108	147	14.9101
.(((((((((((((((((....)))))))))))))))))	chr9:4728647-4728880(-)$1	1	12	51	25.0420
)))))))))))))))))).))))))))))).))))))))	chr17:34879186-34879417(-)$1	1	81	120	23.9267
((((((((((((((((.(......).))))).)))))))	chr16:89190817-89191177(+)$1	1	314	353	18.3881
((((((((((((((((((....)))))))))))))))))	chr10:77452224-77452520(+)$1	1	75	114	25.1332
(((((((((((((((((((((((((((((((((((((((	chr6:43101961-43102275(+)$1	1	64	103	24.4714
.(((((((.(((((((((((.((((((((((((((((..	chr7:75566387-75566685(+)$1	1	11	50	21.2240
.(((..((((((((((((....))))))))))))..)))	chr1:12662266-12662521(-)$1	1	189	228	20.2459
.....(((...(((.(((....))))))...)))..)))	chr5:137803447-137803736(+)$1	1	246	285	13.5746
((((((((((.(((.((((((((((((((((((..((((	chr1:31471965-31472257(-)$1	1	41	80	22.3006
.((.(((((((.(((((((.(((((((((((((((((((	chr4:2560256-2560518(+)$1	1	122	161	18.9514
(((((((((((((((((.(..((..((.(..(((..(((	chrX:73428192-73428456(-)$1	1	123	162	16.8889
)))))))))))))))..)).).))))))))).(((((((	chr4:152210919-152211178(-)$1	1	110	149	18.5745
(((.((((((((((((.(......))))))))))))).)	chr5:170828134-170828418(+)$1	1	154	193	21.7451
)((((((.((((((((((....)))))))...))).)))	chr4:773495-773746(-)$1	1	130	169	13.6856
((((((((((((.((((.....)))).))..))))))))	chr20:18676183-18676473(+)$1	1	174	213	15.7719
((((....((.(((((((....))))))).)).))))))	chr17:60048780-60049065(-)$1	1	98	137	15.7242
...((((.(((((((((((...)))))))))))))))..	chr1:12649498-12649783(-)$1	1	149	188	16.8638
((((((((((.((((((((((((((((.(((((((((((	chr10:34869073-34869326(-)$1	1	83	122	24.1445

#PSSM
= : 0.52	g : 0.11	c : 0.09	[ : 0.07	$ : 0.04	d : 0.02	! : 0.02	a : 0.02	: : 0.02	e : 0.02	# : 0.02	
= : 0.54	c : 0.16	g : 0.14	$ : 0.04	[ : 0.02	b : 0.02	f : 0.02	# : 0.02	
= : 0.57	g : 0.16	c : 0.14	! : 0.02	$ : 0.02	b : 0.02	f : 0.02	# : 0.02	
= : 0.59	g : 0.16	c : 0.07	[ : 0.04	e : 0.02	! : 0.02	$ : 0.02	f : 0.02	d : 0.02	
= : 0.61	g : 0.16	# : 0.04	i : 0.02	[ : 0.02	e : 0.02	! : 0.02	$ : 0.02	f : 0.02	d : 0.02	
= : 0.59	g : 0.16	# : 0.04	" : 0.02	i : 0.02	e : 0.02	[ : 0.02	! : 0.02	c : 0.02	f : 0.02	d : 0.02	
= : 0.64	g : 0.14	# : 0.04	" : 0.02	i : 0.02	[ : 0.02	e : 0.02	c : 0.02	f : 0.02	d : 0.02	
= : 0.61	g : 0.11	[ : 0.09	c : 0.04	# : 0.04	" : 0.02	i : 0.02	e : 0.02	
= : 0.64	g : 0.14	c : 0.04	[ : 0.04	e : 0.02	i : 0.02	$ : 0.02	" : 0.02	b : 0.02	
= : 0.64	g : 0.11	c : 0.04	b : 0.04	" : 0.04	e : 0.02	i : 0.02	$ : 0.02	% : 0.02	
= : 0.50	g : 0.11	[ : 0.11	% : 0.04	b : 0.04	" : 0.04	e : 0.02	i : 0.02	! : 0.02	$ : 0.02	c : 0.02	
= : 0.50	g : 0.11	c : 0.07	e : 0.04	% : 0.04	[ : 0.04	" : 0.04	a : 0.02	i : 0.02	! : 0.02	$ : 0.02	b : 0.02	
= : 0.52	g : 0.11	c : 0.07	[ : 0.04	e : 0.04	" : 0.04	% : 0.04	! : 0.02	i : 0.02	$ : 0.02	d : 0.02	
= : 0.52	g : 0.11	e : 0.07	c : 0.07	! : 0.04	" : 0.04	% : 0.04	d : 0.04	[ : 0.02	
= : 0.47	g : 0.11	e : 0.09	[ : 0.09	d : 0.07	b : 0.04	% : 0.04	! : 0.02	" : 0.02	
= : 0.47	c : 0.11	e : 0.09	d : 0.07	g : 0.07	b : 0.04	[ : 0.02	! : 0.02	% : 0.02	a : 0.02	2 : 0.02	
= : 0.45	c : 0.14	e : 0.07	[ : 0.07	g : 0.07	b : 0.04	d : 0.04	! : 0.02	r : 0.02	o : 0.02	2 : 0.02	
= : 0.42	c : 0.14	e : 0.07	b : 0.07	a : 0.07	g : 0.07	d : 0.04	r : 0.02	o : 0.02	[ : 0.02	n : 0.02	
m : 0.38	= : 0.26	n : 0.07	o : 0.07	[ : 0.02	e : 0.02	c : 0.02	r : 0.02	d : 0.02	] : 0.02	g : 0.02	a : 0.02	b : 0.02	
m : 0.38	= : 0.21	n : 0.07	[ : 0.07	o : 0.07	l : 0.04	] : 0.04	c : 0.02	r : 0.02	d : 0.02	! : 0.02	
m : 0.38	= : 0.26	n : 0.07	o : 0.07	l : 0.04	c : 0.02	b : 0.02	r : 0.02	d : 0.02	[ : 0.02	! : 0.02	a : 0.02	
m : 0.38	= : 0.28	n : 0.07	o : 0.07	l : 0.04	b : 0.04	c : 0.02	r : 0.02	[ : 0.02	] : 0.02	
= : 0.42	c : 0.14	d : 0.07	n : 0.04	b : 0.04	i : 0.04	o : 0.04	g : 0.04	! : 0.02	a : 0.02	e : 0.02	[ : 0.02	r : 0.02	
= : 0.47	c : 0.14	d : 0.07	! : 0.04	b : 0.04	i : 0.04	o : 0.04	g : 0.04	2 : 0.02	e : 0.02	r : 0.02	
= : 0.47	c : 0.14	i : 0.07	d : 0.07	a : 0.04	g : 0.04	b : 0.02	] : 0.02	2 : 0.02	e : 0.02	r : 0.02	! : 0.02	
= : 0.47	] : 0.09	g : 0.09	i : 0.07	b : 0.07	d : 0.07	3 : 0.02	4 : 0.02	e : 0.02	[ : 0.02	c : 0.02	
= : 0.52	g : 0.14	i : 0.07	b : 0.07	3 : 0.04	c : 0.04	e : 0.04	4 : 0.02	] : 0.02	
= : 0.52	g : 0.14	i : 0.09	3 : 0.04	c : 0.04	[ : 0.04	4 : 0.02	] : 0.02	e : 0.02	b : 0.02	
= : 0.57	g : 0.14	i : 0.09	e : 0.04	3 : 0.04	c : 0.02	4 : 0.02	a : 0.02	b : 0.02	
= : 0.57	g : 0.11	i : 0.09	e : 0.04	3 : 0.04	[ : 0.02	c : 0.02	! : 0.02	2 : 0.02	] : 0.02	
= : 0.54	g : 0.11	i : 0.09	e : 0.04	! : 0.04	3 : 0.04	c : 0.02	] : 0.02	2 : 0.02	b : 0.02	
= : 0.59	g : 0.11	c : 0.07	i : 0.04	e : 0.02	! : 0.02	[ : 0.02	] : 0.02	: : 0.02	3 : 0.02	b : 0.02	
= : 0.61	c : 0.09	i : 0.07	g : 0.07	] : 0.07	e : 0.02	4 : 0.02	3 : 0.02	
= : 0.61	g : 0.09	c : 0.09	i : 0.04	4 : 0.04	[ : 0.02	3 : 0.02	! : 0.02	d : 0.02	
= : 0.59	g : 0.09	c : 0.07	i : 0.04	4 : 0.04	2 : 0.04	! : 0.04	3 : 0.02	d : 0.02	
= : 0.57	g : 0.11	i : 0.07	4 : 0.04	] : 0.04	2 : 0.04	c : 0.02	[ : 0.02	! : 0.02	d : 0.02	
= : 0.59	g : 0.16	c : 0.07	4 : 0.04	i : 0.04	] : 0.02	f : 0.02	d : 0.02	
= : 0.52	g : 0.16	c : 0.09	i : 0.04	" : 0.02	[ : 0.02	4 : 0.02	$ : 0.02	] : 0.02	f : 0.02	5 : 0.02	
= : 0.47	g : 0.16	c : 0.11	i : 0.04	" : 0.02	b : 0.02	[ : 0.02	4 : 0.02	$ : 0.02	d : 0.02	f : 0.02	5 : 0.02	

#score	820.2338963662527
#seq	42
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_transcript_m1_run2.txt

#BEAR
d[ccccccuuuuuuuuuuuuccc]cc	chr3:176889869-176890156(-)$1	287	146	172	18.8756
iii!!bbwwwwwwwwwwwwwwbb333	chr20:61827313-61827582(-)$1	269	51	77	21.5143
ccc[eeeeeuuuuuuuuuuuueeeee	chr5:39056580-39056870(-)$1	290	251	277	17.5796
ccc[ccc^^^^^^^^^^^^^^^^^^c	chr11:62623125-62623377(-)$1	252	84	110	24.7274
ggg^^^^^^^^^^^^^^^^^^^^^^^	chr1:32636744-32636976(+)$1	232	64	90	26.8219
hhh^^^^^^^^^^^^^^^^^^^^^^^	chr12:132481727-132481998(+)$1	271	26	52	26.3408
eeeee^^^^^^^^^^^^^^^^^^^ee	chr7:26234606-26234818(-)$1	212	58	84	24.7007
[ffffff^^^^^^^^^^^^^^^^^^f	chr16:89879668-89879921(-)$1	253	68	94	23.8355
ggggggyyyyyyyyyyyyyyyygggg	chr16:11935099-11935353(-)$1	254	38	64	21.2126
dddd^^^^^^^^^^^^^^^^^^^^^d	chr20:47901046-47901295(+)$1	249	9	35	25.6527
ggggggguuuuuuuuuuuuggggggg	chr11:65195662-65195876(+)$1	214	92	118	17.3539
[dddd!!avvvvvvvvvvvvva22dd	chr11:85749213-85749468(-)$1	255	62	88	19.7999
ee[dddd^^^^^^^^^^^^^^^^^^^	chr5:81572854-81573102(-)$1	248	79	105	25.0404
!!eeeeevvvvvvvvvvvvveeeee]	chr22:20847875-20848121(-)$1	246	195	221	19.1830
dddd^^^^^^^^^^^^^^^^^^^^^^	chr14:31473343-31473603(-)$1	260	79	105	26.3776
b!!cccxxxxxxxxxxxxxxxccc22	chr22:22894411-22894645(-)$1	234	28	54	19.9844
ee[a[cccuuuuuuuuuuuuccc]a]	chr1:171466535-171466783(+)$1	248	173	199	19.4196
[dddd^^^^^^^^^^^^^^^^^^^^^	chr13:107211366-107211589(-)$1	223	130	156	26.2035
ccc^^^^^^^^^^^^^^^^^^^^ccc	chr1:27795265-27795537(-)$1	272	82	108	24.8484
eeee[bbwwwwwwwwwwwwwwbb]ee	chr21:34896523-34896795(-)$1	272	222	248	20.0879
eee^^^^^^^^^^^^^^^^^^^^^^^	chr3:160154423-160154692(-)$1	269	16	42	26.6720
ddd^^^^^^^^^^^^^^^^^^^^^^^	chr17:30701149-30701411(+)$1	262	81	107	26.6196
""ffffffvvvvvvvvvvvvvfffff	chr11:3012446-3012698(-)$1	252	87	113	17.7498
eee^^^^^^^^^^^^^^^^^^^^^^^	chr1:29388002-29388258(+)$1	256	77	103	26.6720
iiiiiii^^^^^^^^^^^^^^^^^^i	chr12:133348986-133349236(-)$1	250	82	108	24.2689
[a[dddduuuuuuuuuuuudddd22a	chr17:74731367-74731584(-)$1	217	145	171	18.1041
fff^^^^^^^^^^^^^^^^^^fffff	chr1:28834026-28834263(+)$1	237	86	112	22.4041
###ddddvvvvvvvvvvvvvdddd44	chr7:148700599-148700861(-)$1	262	162	188	19.4671
ddd^^^^^^^^^^^^^^^^^^^^^^^	chr7:158565412-158565687(-)$1	275	81	107	26.6196
dddd[cccuuuuuuuuuuuucccddd	chr17:29036540-29036853(+)$1	313	195	221	18.4898
ddddddxxxxxxxxxxxxxxxdddd]	chr7:138151118-138151376(+)$1	258	87	113	19.7205
dddddddxxxxxxxxxxxxxxxdddd	chr2:113420842-113421059(+)$1	217	11	37	19.5382
ccc[awwwwwwwwwwwwwwa]ccc77	chr4:71801301-71801534(+)$1	233	20	46	20.2257
ggg^^^^^^^^^^^^^^^^^^^^^^^	chr8:11662024-11662286(+)$1	262	76	102	26.8219
iiiddddvvvvvvvvvvvvvdddd]i	chr19:2233577-2233852(-)$1	275	204	230	19.0601
ddd^^^^^^^^^^^^^^^^^^^^^^^	chr8:23405905-23406137(+)$1	232	82	108	26.6196
=======^^^^^^^^^^^^^^^^^^^	chr4:77996929-77997146(-)$1	217	42	68	25.3061
b[ddddxxxxxxxxxxxxxxxdddd]	chr20:34326053-34326298(-)$1	245	77	103	19.5694
====ddddvvvvvvvvvvvvvdddd:	chr4:65875-66123(+)$1	248	173	199	18.2398
!ggggggguuuuuuuuuuuugggggg	chr4:60957-61248(+)$1	291	37	63	17.6391
ccc^^^^^^^^^^^^^^^^^^^^^^^	chr22:19480859-19481131(+)$1	272	83	109	26.7404
fff^^^^^^^^^^^^^^^^^^^^^^^	chr7:91610832-91611099(+)$1	267	76	102	26.4122
========vvvvvvvvvvvvv=====	chr2:188330017-188330276(-)$1	259	215	241	19.3442
gg[dddd^^^^^^^^^^^^^^^^^^^	chr5:98248201-98248481(-)$1	280	74	100	25.1523
eeee[bb^^^^^^^^^^^^^^^^^^^	chr16:2804202-2804433(+)$1	231	20	46	24.7856
iii^^^^^^^^^^^^^^^^^^^^^^^	chr3:195795694-195795904(-)$1	210	61	87	26.8594
bb^^^^^^^^^^^^^^^^^^^^^^^^	chr6:36568695-36568967(+)$1	272	58	84	25.8638
##eeeeeuuuuuuuuuuuueeeee33	chr22:17096078-17096369(+)$1	291	242	268	18.3924
==[dddd^^^^^^^^^^^^^^^^^^^	chr9:134067478-134067725(+)$1	247	64	90	25.2170
fffff^^^^^^^^^^^^^^^^^^^^^	chr2:153546161-153546438(-)$1	277	76	102	25.6354
ddd^^^^^^^^^^^^^^^^^^^^^^^	chr22:19390466-19390730(-)$1	264	76	102	26.6196
ddd^^^^^^^^^^^^^^^^^^^^^^^	chr1:23654368-23654594(-)$1	226	69	95	26.6196
eeeee^^^^^^^^^^^^^^^^^^^^^	chrX:73071995-73072238(-)$1	243	166	192	26.0992
ccddddxxxxxxxxxxxxxxxdddd]	chr12:57033406-57033623(-)$1	217	49	75	19.8250
ccc^^^^^^^^^^^^^^^^^^^^^^^	chrX:73071794-73072024(-)$1	230	61	87	26.7404
ee!!cccwwwwwwwwwwwwwwccc22	chr3:133307584-133307812(+)$1	228	95	121	21.2488
!ffffffxxxxxxxxxxxxxxxffff	chr1:167758046-167758271(+)$1	225	106	132	19.0335
ccc[ccc^^^^^^^^^^^^^^^^^^^	chr6:33269245-33269498(-)$1	253	16	42	25.3054
deeeee^^^^^^^^^^^^^^^^^^^^	chr21:45557485-45557754(+)$1	269	84	110	25.5834
ggggggyyyyyyyyyyyyyyyygggg	chr10:135217547-135217826(+)$1	279	7	33	21.2126
ccddddxxxxxxxxxxxxxxxdddd]	chr12:57033423-57033644(-)$1	221	70	96	19.8250
hhh[dddduuuuuuuuuuuudddd22	chr7:104700349-104700602(+)$1	253	199	225	17.7376
eeeee[auuuuuuuuuuuua]eeeee	chr12:76441726-76441980(-)$1	254	172	198	18.6660
ggg^^^^^^^^^^^^^^^^^^^^^^^	chr17:79558293-79558576(-)$1	283	75	101	26.8219
!ffffffxxxxxxxxxxxxxxxffff	chr1:167758026-167758246(+)$1	220	126	152	19.0335

#otherMatches

#Seq PSSM
guggcgcaaucuuggcucacugcagc	chr3:176889869-176890156(-)$1	287	146	172	18.8756
AGACAGAUAACUUUUAAUUUUUCAAA	chr20:61827313-61827582(-)$1	269	51	77	21.5143
aguacaggcacacgccaccaagccug	chr5:39056580-39056870(-)$1	290	251	277	17.5796
UUGUCUUUUUCUUUUAUUUUCUUUUG	chr11:62623125-62623377(-)$1	252	84	110	24.7274
UAAUCAAUUUGCACCuuuuuuuauuu	chr1:32636744-32636976(+)$1	232	64	90	26.8219
cuggaagccuuaucaauaacaugaaa	chr12:132481727-132481998(+)$1	271	26	52	26.3408
AAGCuuuuuuuuuuuuuuuaauaugg	chr7:26234606-26234818(-)$1	212	58	84	24.7007
cagaaaaUGGCAUUGUCUACuuuuuu	chr16:89879668-89879921(-)$1	253	68	94	23.8355
GGAUUUUUUUUUUAUUUUUGUUAGAU	chr16:11935099-11935353(-)$1	254	38	64	21.2126
gggauauuaccuuuuucuuacuauuu	chr20:47901046-47901295(+)$1	249	9	35	25.6527
GAGAGCCAGUAUUGGUUGAGGCUCUU	chr11:65195662-65195876(+)$1	214	92	118	17.3539
UGCAACUCUUAUUCuuuuuuuguuuu	chr11:85749213-85749468(-)$1	255	62	88	19.7999
Cuuuuuuuuuuuuuuuuuuuuuuuuu	chr5:81572854-81573102(-)$1	248	79	105	25.0404
cggcuaauuuuuuuguauuuuuagua	chr22:20847875-20848121(-)$1	246	195	221	19.1830
cuaauuuuuuuuuuuuaacuuuuuuu	chr14:31473343-31473603(-)$1	260	79	105	26.3776
GAUUUUUUUCUUUUUCUUUUCAGAUG	chr22:22894411-22894645(-)$1	234	28	54	19.9844
caagcgauccuucugucucagucucc	chr1:171466535-171466783(+)$1	248	173	199	19.4196
AGUGGUAAAGGGAAAAGGUUAAAAAU	chr13:107211366-107211589(-)$1	223	130	156	26.2035
cuccuuuuuuuuuuuuuuuuuuugag	chr1:27795265-27795537(-)$1	272	82	108	24.8484
GAUACUGAUUUUUAUUCCUUGCGUUA	chr21:34896523-34896795(-)$1	272	222	248	20.0879
UAACUCAUUUAAAUUUUCUACCACAU	chr3:160154423-160154692(-)$1	269	16	42	26.6720
cuuuuuuuuuuuuuuuuuuuuuuuuu	chr17:30701149-30701411(+)$1	262	81	107	26.6196
AGAGGUCACAUUUGUAUUUUUUGACC	chr11:3012446-3012698(-)$1	252	87	113	17.7498
cuuuguuuuuuuuuuuuuuuuuuuuu	chr1:29388002-29388258(+)$1	256	77	103	26.6720
uuguuuuuuuuuuuuuuuuuuuuuug	chr12:133348986-133349236(-)$1	250	82	108	24.2689
GAAUACGUAAAUUCAAACUUGUACAU	chr17:74731367-74731584(-)$1	217	145	171	18.1041
uuuuuuuuuuuuuuuuuuuuuggaga	chr1:28834026-28834263(+)$1	237	86	112	22.4041
uuaguccagauuuuuacagaggauac	chr7:148700599-148700861(-)$1	262	162	188	19.4671
UUCUGCCUUUUUUUUUUUUUUAACUU	chr7:158565412-158565687(-)$1	275	81	107	26.6196
GCCCCGGCUCCGGGAGAUGUGCCGGG	chr17:29036540-29036853(+)$1	313	195	221	18.4898
UGCuuuuuuuuuuuuuuuuuuggaga	chr7:138151118-138151376(+)$1	258	87	113	19.7205
CUGUACAUAUUUCUCUACUUUUUGUA	chr2:113420842-113421059(+)$1	217	11	37	19.5382
GUGUGUAUUUUCCUUUUCUCUCACUU	chr4:71801301-71801534(+)$1	233	20	46	20.2257
UAGuuucucuuuuuuuuuuuuuuuuu	chr8:11662024-11662286(+)$1	262	76	102	26.8219
cuccugccucagcuucccaaguagcg	chr19:2233577-2233852(-)$1	275	204	230	19.0601
gGCuuuuuuuuuuuuuuuuuuuagac	chr8:23405905-23406137(+)$1	232	82	108	26.6196
GCCUCUGUCUCGCUUUUUCUUAUUUU	chr4:77996929-77997146(-)$1	217	42	68	25.3061
AUGAGAUCCACuuuuuuuuuuucuuu	chr20:34326053-34326298(-)$1	245	77	103	19.5694
guugacaauauauauuauuuuuuguu	chr4:65875-66123(+)$1	248	173	199	18.2398
uuggauaccacugGUUUAAAGUAUCU	chr4:60957-61248(+)$1	291	37	63	17.6391
uacuuuguuuuuuuuuuuuuguuguu	chr22:19480859-19481131(+)$1	272	83	109	26.7404
uuguauuucuuuuuuuuuuuuuuuuu	chr7:91610832-91611099(+)$1	267	76	102	26.4122
acgaguuucaccacguuaccuaggcu	chr2:188330017-188330276(-)$1	259	215	241	19.3442
UGCUUUCuuuauuuuauuuuauuuua	chr5:98248201-98248481(-)$1	280	74	100	25.1523
AGGUGGCUCAUUCCCUAAAAGUUCUC	chr16:2804202-2804433(+)$1	231	20	46	24.7856
AGAUGGGUUUUUGUUAuuuuucuuuu	chr3:195795694-195795904(-)$1	210	61	87	26.8594
CCuuuuuuuucuuuucuuuuuuuucu	chr6:36568695-36568967(+)$1	272	58	84	25.8638
CCGAGACUGUAGAGCUGGUGUCUCUU	chr22:17096078-17096369(+)$1	291	242	268	18.3924
UUUUUGUAAUAuucuuuuuuuuuuuu	chr9:134067478-134067725(+)$1	247	64	90	25.2170
CAAAAUAUCUUUUuuuuuuuuuuuuu	chr2:153546161-153546438(-)$1	277	76	102	25.6354
cuuuuucuuuuucuuuuuuuuuuuuu	chr22:19390466-19390730(-)$1	264	76	102	26.6196
agacuucuuuuuucuuuucuuuuuuu	chr1:23654368-23654594(-)$1	226	69	95	26.6196
UCGGAUACCUGCUGAUUCCCUUCCCC	chrX:73071995-73072238(-)$1	243	166	192	26.0992
ucuuucuuuuuuuuuuuuuuugagau	chr12:57033406-57033623(-)$1	217	49	75	19.8250
GGAUACCUGCUUUUUUUUUUUUUAUU	chrX:73071794-73072024(-)$1	230	61	87	26.7404
UUUUUGUUUUGUUUUUGUUCUGCAUU	chr3:133307584-133307812(+)$1	228	95	121	21.2488
ugcccagacuagccuugaacucuugg	chr1:167758046-167758271(+)$1	225	106	132	19.0335
uaguagcucccuaaaauaauacccua	chr6:33269245-33269498(-)$1	253	16	42	25.3054
cucucuuuuuuuuuuuuuuuuucugu	chr21:45557485-45557754(+)$1	269	84	110	25.5834
gggaaaugucuguucaaauccuuuuc	chr10:135217547-135217826(+)$1	279	7	33	21.2126
ucuuucuuuuuuuuuuuuuuugagau	chr12:57033423-57033644(-)$1	221	70	96	19.8250
ucuccugccucagcccccaaguagcu	chr7:104700349-104700602(+)$1	253	199	225	17.7376
CUGUGCCUUUCAUUACUUUGUUACAG	chr12:76441726-76441980(-)$1	254	172	198	18.6660
AGGuuuuuuuuuuuuuuuuuuuuuuu	chr17:79558293-79558576(-)$1	283	75	101	26.8219
ugcccagacuagccuugaacucuugg	chr1:167758026-167758246(+)$1	220	126	152	19.0335

#DB
(.((((((............))).))	chr3:176889869-176890156(-)$1	1	146	172	18.8756
(((..((..............))...	chr20:61827313-61827582(-)$1	1	51	77	21.5143
(((.(((((............)))))	chr5:39056580-39056870(-)$1	1	251	277	17.5796
(((.(((..................)	chr11:62623125-62623377(-)$1	1	84	110	24.7274
(((.......................	chr1:32636744-32636976(+)$1	1	64	90	26.8219
(((.......................	chr12:132481727-132481998(+)$1	1	26	52	26.3408
(((((...................))	chr7:26234606-26234818(-)$1	1	58	84	24.7007
.((((((..................)	chr16:89879668-89879921(-)$1	1	68	94	23.8355
((((((................))))	chr16:11935099-11935353(-)$1	1	38	64	21.2126
((((.....................)	chr20:47901046-47901295(+)$1	1	9	35	25.6527
(((((((............)))))))	chr11:65195662-65195876(+)$1	1	92	118	17.3539
.((((..(.............)..))	chr11:85749213-85749468(-)$1	1	62	88	19.7999
((.((((...................	chr5:81572854-81573102(-)$1	1	79	105	25.0404
..(((((.............))))).	chr22:20847875-20848121(-)$1	1	195	221	19.1830
((((......................	chr14:31473343-31473603(-)$1	1	79	105	26.3776
(..(((...............)))..	chr22:22894411-22894645(-)$1	1	28	54	19.9844
((.(.(((............))).).	chr1:171466535-171466783(+)$1	1	173	199	19.4196
.((((.....................	chr13:107211366-107211589(-)$1	1	130	156	26.2035
(((....................)))	chr1:27795265-27795537(-)$1	1	82	108	24.8484
((((.((..............)).))	chr21:34896523-34896795(-)$1	1	222	248	20.0879
(((.......................	chr3:160154423-160154692(-)$1	1	16	42	26.6720
(((.......................	chr17:30701149-30701411(+)$1	1	81	107	26.6196
..((((((.............)))))	chr11:3012446-3012698(-)$1	1	87	113	17.7498
(((.......................	chr1:29388002-29388258(+)$1	1	77	103	26.6720
(((((((..................)	chr12:133348986-133349236(-)$1	1	82	108	24.2689
.(.((((............))))..)	chr17:74731367-74731584(-)$1	1	145	171	18.1041
(((..................)))))	chr1:28834026-28834263(+)$1	1	86	112	22.4041
...((((.............))))..	chr7:148700599-148700861(-)$1	1	162	188	19.4671
(((.......................	chr7:158565412-158565687(-)$1	1	81	107	26.6196
((((.(((............))))))	chr17:29036540-29036853(+)$1	1	195	221	18.4898
((((((...............)))).	chr7:138151118-138151376(+)$1	1	87	113	19.7205
(((((((...............))))	chr2:113420842-113421059(+)$1	1	11	37	19.5382
(((.(..............).)))..	chr4:71801301-71801534(+)$1	1	20	46	20.2257
(((.......................	chr8:11662024-11662286(+)$1	1	76	102	26.8219
(((((((.............)))).)	chr19:2233577-2233852(-)$1	1	204	230	19.0601
(((.......................	chr8:23405905-23406137(+)$1	1	82	108	26.6196
(((((((...................	chr4:77996929-77997146(-)$1	1	42	68	25.3061
(.((((...............)))).	chr20:34326053-34326298(-)$1	1	77	103	19.5694
))))((((.............)))).	chr4:65875-66123(+)$1	1	173	199	18.2398
.(((((((............))))))	chr4:60957-61248(+)$1	1	37	63	17.6391
(((.......................	chr22:19480859-19481131(+)$1	1	83	109	26.7404
(((.......................	chr7:91610832-91611099(+)$1	1	76	102	26.4122
((((((((.............)))))	chr2:188330017-188330276(-)$1	1	215	241	19.3442
((.((((...................	chr5:98248201-98248481(-)$1	1	74	100	25.1523
((((.((...................	chr16:2804202-2804433(+)$1	1	20	46	24.7856
(((.......................	chr3:195795694-195795904(-)$1	1	61	87	26.8594
((........................	chr6:36568695-36568967(+)$1	1	58	84	25.8638
..(((((............)))))..	chr22:17096078-17096369(+)$1	1	242	268	18.3924
((.((((...................	chr9:134067478-134067725(+)$1	1	64	90	25.2170
(((((.....................	chr2:153546161-153546438(-)$1	1	76	102	25.6354
(((.......................	chr22:19390466-19390730(-)$1	1	76	102	26.6196
(((.......................	chr1:23654368-23654594(-)$1	1	69	95	26.6196
(((((.....................	chrX:73071995-73072238(-)$1	1	166	192	26.0992
((((((...............)))).	chr12:57033406-57033623(-)$1	1	49	75	19.8250
(((.......................	chrX:73071794-73072024(-)$1	1	61	87	26.7404
((..(((..............)))..	chr3:133307584-133307812(+)$1	1	95	121	21.2488
.((((((...............))))	chr1:167758046-167758271(+)$1	1	106	132	19.0335
(((.(((...................	chr6:33269245-33269498(-)$1	1	16	42	25.3054
((((((....................	chr21:45557485-45557754(+)$1	1	84	110	25.5834
((((((................))))	chr10:135217547-135217826(+)$1	1	7	33	21.2126
((((((...............)))).	chr12:57033423-57033644(-)$1	1	70	96	19.8250
(((.((((............))))..	chr7:104700349-104700602(+)$1	1	199	225	17.7376
(((((.(............).)))))	chr12:76441726-76441980(-)$1	1	172	198	18.6660
(((.......................	chr17:79558293-79558576(-)$1	1	75	101	26.8219
.((((((...............))))	chr1:167758026-167758246(+)$1	1	126	152	19.0335

#PSSM
d : 0.18	e : 0.15	c : 0.13	g : 0.10	i : 0.06	[ : 0.06	! : 0.06	= : 0.06	b : 0.04	f : 0.04	h : 0.03	# : 0.03	" : 0.01	
d : 0.18	e : 0.16	c : 0.13	g : 0.12	f : 0.09	i : 0.06	= : 0.06	[ : 0.03	h : 0.03	! : 0.03	# : 0.03	" : 0.01	a : 0.01	b : 0.01	
d : 0.23	e : 0.15	c : 0.12	g : 0.10	f : 0.10	[ : 0.07	i : 0.06	= : 0.04	h : 0.03	! : 0.03	# : 0.01	^ : 0.01	
^ : 0.27	d : 0.24	e : 0.12	[ : 0.07	f : 0.07	g : 0.06	= : 0.04	c : 0.03	! : 0.03	a : 0.01	i : 0.01	
^ : 0.30	d : 0.23	e : 0.10	c : 0.07	f : 0.07	g : 0.06	[ : 0.06	= : 0.03	! : 0.01	i : 0.01	a : 0.01	
^ : 0.36	d : 0.20	c : 0.10	e : 0.06	f : 0.06	g : 0.06	b : 0.04	= : 0.03	! : 0.01	i : 0.01	w : 0.01	[ : 0.01	
^ : 0.38	d : 0.13	c : 0.09	x : 0.07	f : 0.06	b : 0.04	e : 0.04	y : 0.03	g : 0.03	= : 0.03	! : 0.01	i : 0.01	w : 0.01	a : 0.01	
^ : 0.52	x : 0.12	w : 0.06	u : 0.06	c : 0.04	v : 0.04	y : 0.03	d : 0.03	e : 0.01	a : 0.01	f : 0.01	g : 0.01	= : 0.01	
^ : 0.52	u : 0.13	x : 0.12	v : 0.10	w : 0.06	y : 0.03	e : 0.01	
^ : 0.52	u : 0.15	x : 0.12	v : 0.10	w : 0.06	y : 0.03	
^ : 0.52	u : 0.15	x : 0.12	v : 0.10	w : 0.06	y : 0.03	
^ : 0.52	u : 0.15	x : 0.12	v : 0.10	w : 0.06	y : 0.03	
^ : 0.52	u : 0.15	x : 0.12	v : 0.10	w : 0.06	y : 0.03	
^ : 0.52	u : 0.15	x : 0.12	v : 0.10	w : 0.06	y : 0.03	
^ : 0.52	u : 0.15	x : 0.12	v : 0.10	w : 0.06	y : 0.03	
^ : 0.52	u : 0.15	x : 0.12	v : 0.10	w : 0.06	y : 0.03	
^ : 0.52	u : 0.15	x : 0.12	v : 0.10	w : 0.06	y : 0.03	
^ : 0.52	u : 0.15	x : 0.12	v : 0.10	w : 0.06	y : 0.03	
^ : 0.52	u : 0.15	x : 0.12	v : 0.10	w : 0.06	y : 0.03	
^ : 0.52	x : 0.12	v : 0.10	u : 0.09	w : 0.04	y : 0.03	a : 0.03	g : 0.01	d : 0.01	e : 0.01	
^ : 0.52	x : 0.12	v : 0.06	d : 0.06	c : 0.04	w : 0.04	y : 0.03	g : 0.03	e : 0.03	] : 0.03	u : 0.01	
^ : 0.50	d : 0.13	c : 0.09	e : 0.06	x : 0.04	b : 0.03	y : 0.03	g : 0.03	f : 0.03	a : 0.01	= : 0.01	
^ : 0.50	d : 0.15	c : 0.09	e : 0.06	g : 0.06	f : 0.06	b : 0.03	2 : 0.01	= : 0.01	
^ : 0.49	d : 0.15	e : 0.06	g : 0.06	c : 0.06	f : 0.06	] : 0.04	2 : 0.03	3 : 0.01	= : 0.01	
^ : 0.47	d : 0.12	e : 0.07	g : 0.06	2 : 0.06	f : 0.06	c : 0.03	3 : 0.03	a : 0.01	4 : 0.01	7 : 0.01	] : 0.01	= : 0.01	
^ : 0.41	] : 0.09	f : 0.07	e : 0.06	g : 0.06	d : 0.06	c : 0.04	2 : 0.04	3 : 0.03	i : 0.03	a : 0.01	4 : 0.01	7 : 0.01	: : 0.01	= : 0.01	

#score	1474.1446181708998
#seq	65
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_UTR_m1_run1.txt

#BEAR
c!!eeeeeeeeee[eeeeemmmmeeeee]eeeee]ee	chr7:1007856-1008167(-)$1	311	60	97	10.7495
iiiiiiiii[ccc[ddddoooooodddd22ccc]iii	chr12:104697462-104697747(+)$1	285	11	48	12.1189
!iiiiiiiii$$$$$ddddmmmmdddd22iiiiiiii	chr14:105715317-105715582(-)$1	265	131	168	12.7695
iiiiiiiii[bbccc[bbnnnnnbb]ccc22bb]iii	chr19:59074102-59074382(+)$1	280	130	167	10.9457
ddd####dddd!!ffffffmmmmffffff333dddd]	chr22:45724716-45724979(+)$1	263	158	195	10.7256
!eeeee"""dddd[eeeeemmmmeeeee22ddddeee	chr11:65381128-65381399(-)$1	271	176	213	10.5818
ddd[dddd!!dddd[a[bboooooobb]a]dddd333	chr7:150069988-150070237(+)$1	249	48	85	10.2312
!!ffffff!!iiiiiiiiimmmmiiiiiiiii]ffff	chr16:89346251-89346497(-)$1	246	61	98	13.2374
bb[bb[bb"""iiiiiiiiillliiiiiiiii]bb]b	chr2:242447501-242447763(-)$1	262	100	137	10.1971
d[gggggggccc!!a[cccmmmmccc]a22ccc22gg	chr17:74380016-74380295(+)$1	279	222	259	14.3221
hh:eeeee!!bb[ccc[bbmmmmbbccc]bb]eeeee	chr16:8942446-8942728(+)$1	282	137	174	11.7551
!!ffffff"""ccc[ddddmmmmdddd22ccc22fff	chr17:74380641-74380896(+)$1	255	106	143	12.3104
a[ggggggg[a[gggggggmmmmgggggggagggggg	chr17:80197768-80198012(+)$1	244	37	74	13.8763
hhhhhhh"""bbccc!!bbmmmmbb22ccc]bb4444	chr16:89346795-89347072(-)$1	277	48	85	11.7939
iiiiiiiii"""a!!cccnnnnnccc22a]iiiiiii	chr14:23451425-23451717(-)$1	292	92	129	12.9370
!ccc[ggggggg[ffffffmmmmffffffggggggg2	chr20:62330534-62330760(-)$1	226	114	151	12.1139
a!!ffffff[bb[bb[ccclllccc]bb]bb]fffff	chr5:176873698-176873997(-)$1	299	54	91	10.4920
c:ggggggg[a"""ddddmmmmdddd333a]gggggg	chr2:227663840-227664132(-)$1	292	245	282	11.6637
fff####bb!!gggggggaooooooa]ggggggg444	chr8:144679309-144679557(-)$1	248	58	95	11.1865
e"""ffffff!!aacccammmma]ccc]a]a22ffff	chr7:148921649-148921908(+)$1	259	56	93	11.5329
]eeeeebb[gggggggcccmmmmccc]gggggggbb:	chr16:75297869-75298110(-)$1	241	201	238	11.1837
========="""ccc[a[annnnna]accc333====	chr2:202002059-202002356(+)$1	297	206	243	12.8553
ffffff[eeeee!!cccooooooccc333eeeeefff	chr16:24801582-24801828(+)$1	246	59	96	11.2722
bb]ccc:ccc[a[ccc[bbmmmmbb]ccc]a]cccdd	chr1:2160056-2160328(+)$1	272	77	114	11.6778
ccc"""eeeee!!ffffffmmmmffffff]eeeee33	chr19:2270116-2270391(+)$1	275	106	143	11.3481
b!!ccc[bb####bb[cccooooooccc]bb333bb]	chr4:1229146-1229430(-)$1	284	60	97	11.6330
:bb[ggggggg[ccc[bbnnnnnbb]cccggggggg]	chr9:127020433-127020709(+)$1	276	77	114	10.4544
fff[ccc[a[ccc!!ddddnnnnndddd22ccca]cc	chr19:45166555-45166867(+)$1	312	204	241	10.2369
ggggccc[a[affffffbbmmmmbb]ffffff]a]a]	chr7:76255990-76256273(+)$1	283	215	252	12.8995
!!==========="""cccmmmmccc===========	chr4:763946-764202(-)$1	256	169	206	15.4850
d[ccc[ccc[ccc!!cccooooooccc22cccccccc	chr14:105714209-105714500(-)$1	291	91	128	12.6080
ddbb[ddddgggggggcccmmmmccc333ggggggg5	chrX:20284770-20285040(-)$1	270	184	221	12.1034
ee[eeeee!!ffffff[bbmmmmbbffffff22eeee	chr2:202001724-202002101(+)$1	377	23	60	11.7900
hhhhhhh[a[ccc"""cccmmmmccc22ccc]ahhhh	chr18:55711519-55711796(+)$1	277	43	80	12.2772
b[dddd[a"""ddddbbccclllccc333bb]dddd3	chr7:77166609-77166977(+)$1	368	253	290	10.6063
=========####ddddbbmmmmbb]dddd333====	chr11:706040-706293(-)$1	253	61	98	14.1246
c[eeeee!!ffffff[cccoooooocccffffff22e	chr14:105714041-105714378(-)$1	337	60	97	10.5322
"""cccccc$$$$$cccoooooocccccc]ccc]ggg	chr19:56166196-56166485(+)$1	289	229	266	12.1195
ee[eeeee[eeeee!!cccmmmmccceeeeeeeeee]	chr7:1132503-1132744(-)$1	241	192	229	11.8843
iiiiiii####hhhhhhhhmmmmhhhhhhhh4444ii	chr8:144678729-144678998(-)$1	269	196	233	11.2034
&&dddd[a!!eeeee!!bbmmmmbb]eeeee22a333	chr15:43662878-43663210(-)$1	332	181	218	11.4194
ddddddffffff[ccc[bbmmmmbb333cccffffff	chr8:144671086-144671337(-)$1	251	62	99	12.0321
c"""ffffff!!eeeeeooooooeeeee333ffffff	chr19:1911810-1912102(+)$1	292	144	181	10.5015
Ba[ffffff[a[eeeeebbmmmmbb]eeeee]a]fff	chrX:153774925-153775180(+)$1	255	180	217	11.4910
d[gggggggccc!!a[cccmmmmccc]a22ccc22gg	chr17:74380190-74380435(+)$1	245	48	85	14.3221
ggggg"""a[a[ffffffnnnnnffffff]a]a333g	chr3:195622690-195622959(-)$1	269	44	81	10.9129
a[eeeee[a[bba!!ddddmmmmdddd22a]bbaeee	chr7:127671510-127671764(+)$1	254	156	193	11.8157
#eeeee"""ddddbb[cccmmmmccc333bb]dddd2	chr16:8941585-8941855(+)$1	270	148	185	12.2094
"""ffffffccc"""bboooooobb]ccc]ffffffb	chr16:87736814-87737083(-)$1	269	200	237	11.0014
d!!ggggggg!!ccc!!bbmmmmbbccc]ggggggg5	chr16:87732286-87732540(-)$1	254	149	186	14.1861
$$$ccc[eeeeeccc!!bbmmmmbb22ccc]eeeee]	chr8:144343387-144343663(+)$1	276	134	171	12.0825
ee$$$$$dddd####a[bbmmmmbb]a333ddddeee	chr4:1229550-1229798(-)$1	248	152	189	11.7998
ggggggggg!!bb[eeeeemmmmeeeee]bb]ggggg	chr16:75285405-75285652(-)$1	247	177	214	12.0443
]eeeeebb[gggggggcccmmmmccc]gggggggbb:	chr16:75297695-75297952(-)$1	257	43	80	11.1837
eeebb[eeeee####bb[ammmma]bb333eeeee]b	chr17:43225927-43226209(+)$1	282	138	175	11.0433
ggggggg[dddd"""ddddmmmmdddd333dddd]gg	chr14:105714725-105714965(-)$1	240	172	209	12.5099
eeeee"""a!!a[ccc[bbmmmmbb]ccc]a22a333	chr6:41514189-41514434(+)$1	245	33	70	14.5698
ddd[ccc!!ccc[ddddbbmmmmbb]dddd]ccc333	chr4:1228547-1228834(-)$1	287	112	149	12.5848
:::bb===========[bbmmmmbb22==========	chr9:139715774-139716050(+)$1	276	189	226	11.2680
bb[dddd[ccc!!bb[cccmmmmccc]bb]cccdddd	chr9:134350650-134350917(+)$1	267	86	123	11.4449
[eeeeeccc[ccc[bb[bboooooobb]bb]ccc]cc	chr1:1284447-1284710(-)$1	263	24	61	10.4553

#otherMatches

#Seq PSSM
AGGCACUGUCGGAAAGGGGCUGGCUCCUGUCUGGUCA	chr7:1007856-1008167(-)$1	311	60	97	10.7495
gcgugcugggggcgggucgcgccgggccgggccgCUA	chr12:104697462-104697747(+)$1	285	11	48	12.1189
ggcgcgggggccgcggggcACGGGCUCACCUCUCGCG	chr14:105715317-105715582(-)$1	265	131	168	12.7695
UAGCGCCAGGGCCCGGGGGAUCGCCGUGGAUGCGCUG	chr19:59074102-59074382(+)$1	280	130	167	10.9457
uuuuaaaugaccagauuucucaagaagucacugucac	chr22:45724716-45724979(+)$1	263	158	195	10.7256
AGCCCUUGAAGAGCCUCUUCCUCAAGAGCCCUCUAGG	chr11:65381128-65381399(-)$1	271	176	213	10.5818
CGGUGGGCGGGGCCGUGUUGGCUGAGAGAGGGCUGGG	chr7:150069988-150070237(+)$1	249	48	85	10.2312
GGGGUCAUAAACGGUGGGGAUGUUUCCACCGUAGUGG	chr16:89346251-89346497(-)$1	246	61	98	13.2374
cccggcggccUGGGGGGUCUCCUGGGCCCCCCCCCAC	chr2:242447501-242447763(-)$1	262	100	137	10.1971
CCCGGCGCCGACAGCACCCGCGGGGGCGAGGUCGUGG	chr17:74380016-74380295(+)$1	279	222	259	14.3221
AGUUUCUCAGGGAUGGAGCGAGAGCCCAGCCAGAGAA	chr16:8942446-8942728(+)$1	282	137	174	11.7551
AGGGAGCGAGGCCGGGGAGUCCGCUCCAGCGGGGCGC	chr17:74380641-74380896(+)$1	255	106	143	12.3104
CAGUGGCCUGCGUGGCUGGGAGCCCGGUCAGAGGCCG	chr17:80197768-80198012(+)$1	244	37	74	13.8763
GGCUCGGACCUCCUGCUGAAGUCUCCACAGAGAUUCC	chr16:89346795-89347072(-)$1	277	48	85	11.7939
GGCGCAGGGCAUCCAGGCCGCCCGCUAAGCCCCUGUG	chr14:23451425-23451717(-)$1	292	92	129	12.9370
AGCUGCGGGGCUGUGACUCACAGGAGUCGGGCCCUGG	chr20:62330534-62330760(-)$1	226	114	151	12.1139
CGAGCUCGUUCUCCUGGCUCGGGGCGAGCAGCGCGGG	chr5:176873698-176873997(-)$1	299	54	91	10.4920
ACUCAGGAGGGAAGGCGCGCGCGCGCGCGCGCUCCUG	chr2:227663840-227664132(-)$1	292	245	282	11.6637
GCCGGAAGGAGUCGGGCGCGACAGAGACGCCCGAGGG	chr8:144679309-144679557(-)$1	248	58	95	11.1865
ACGGCAGCUCCCGCCGCCUCCUGAGCGAGACUAGGGC	chr7:148921649-148921908(+)$1	259	56	93	11.5329
GCUGGGGGUGGGCAGAGGUCUUUGCCAUCUGCCCCCU	chr16:75297869-75298110(-)$1	241	201	238	11.1837
CAGGCCAUGGAUGCCACCGUCGAUCUGGGCUGACAUG	chr2:202002059-202002356(+)$1	297	206	243	12.8553
GCACUAACUUUCAAGUUAACACAAACAAAGGAGGUGG	chr16:24801582-24801828(+)$1	246	59	96	11.2722
cggggcggcggcgggggccgggggggcccgggcgcgc	chr1:2160056-2160328(+)$1	272	77	114	11.6778
UUGGGGGCGGGGUCGGCCUUGGGGGGCUGGUCCGCGG	chr19:2270116-2270391(+)$1	275	106	143	11.3481
GGAUCUGAGAAAACGGCGAAGCUGAUCGGUGGAACUG	chr4:1229146-1229430(-)$1	284	60	97	11.6330
aguguggccgcgcggggcugagcgugucggcggccgg	chr9:127020433-127020709(+)$1	276	77	114	10.4544
UAAAGGAACAUUGGUUGCUUUGGUGGCACGUAAGCUC	chr19:45166555-45166867(+)$1	312	204	241	10.2369
CUUGCCCAGGUAACUGCCCAUGAGGAGCAGUUCGGCA	chr7:76255990-76256273(+)$1	283	215	252	12.8995
AGCGUACACAUAUGUAGCAUGCAUGUGUGUGUGUGCG	chr4:763946-764202(-)$1	256	169	206	15.4850
uagucgcgcgcugaaggucacacagccggcggguggg	chr14:105714209-105714500(-)$1	291	91	128	12.6080
cgccgccgccgccgcugccgUGGGGCUCgggcggcga	chrX:20284770-20285040(-)$1	270	184	221	12.1034
GAGCUGGGGAAGGGGGCAGAGACCUCCCCUUGGCCUA	chr2:202001724-202002101(+)$1	377	23	60	11.7900
gcgcgggucgcggggagggAAAGCCCGGCCGGGUCUG	chr18:55711519-55711796(+)$1	277	43	80	12.2772
GAUGGAGCAAGUGGAGAUCCUGAGGAAAUUCAUCCAG	chr7:77166609-77166977(+)$1	368	253	290	10.6063
CUGUUCGCGCCUCGGCCGGGGCGCCAGGUCUCCCGCG	chr11:706040-706293(-)$1	253	61	98	14.1246
GCCCUGCCUCUGUGGCUCUGCCUGUGGAUCGCAGUCG	chr14:105714041-105714378(-)$1	337	60	97	10.5322
AAGGCGAGGCGAAAGCUGCACAGGGCCCUACGCGGCC	chr19:56166196-56166485(+)$1	289	229	266	12.1195
CACCCAGGUGUGUGCAGCUCCCGAGUCACACCCUGGC	chr7:1132503-1132744(-)$1	241	192	229	11.8843
CUUGGGGUUGUCCCUGCCCGACAGGGCGGGGUGCUUC	chr8:144678729-144678998(-)$1	269	196	233	11.2034
GACCGCACGACGGCUCCGGGUUACCCGGCCGGAGGGA	chr15:43662878-43663210(-)$1	332	181	218	11.4194
AGUGCCGCCACCACGCUGCCGAGGCCCUGCGGGUGGC	chr8:144671086-144671337(-)$1	251	62	99	12.0321
CUCAGCUUUGGUGGCAGCACGCCCUGCCUUGUGGAGC	chr19:1911810-1912102(+)$1	292	144	181	10.5015
cgggcgccUGGGCUGAGCGGACCCGCCUCAGGCGAGG	chrX:153774925-153775180(+)$1	255	180	217	11.4910
CCCGGCGCCGACAGCACCCGCGGGGGCGAGGUCGUGG	chr17:74380190-74380435(+)$1	245	48	85	14.3221
GUGCCCAGCGCACAGCGCGUGCGGCGUUGCGGGAGUG	chr3:195622690-195622959(-)$1	269	44	81	10.9129
GAGGACCAGCGGCGUGGCGGCUGCGCUCGGACCCGGU	chr7:127671510-127671764(+)$1	254	156	193	11.8157
CGGUGGCCAGAGCCGAGGGUCCUCCCACACGUGCUCA	chr16:8941585-8941855(+)$1	270	148	185	12.2094
ACCCGGGGACGCCAUGGAACUCACUCGCGAUUCCUGC	chr16:87736814-87737083(-)$1	269	200	237	11.0014
CGUGCCUGUCAGGGAAGGCCGAGGCUCCGGACAGGCG	chr16:87732286-87732540(-)$1	254	149	186	14.1861
AAGGCCGUGUCCCCAGAGCUGAGGCGGUGGUGGGCAG	chr8:144343387-144343663(+)$1	276	134	171	12.0825
cccuuuagaggaagacagcgucagccgaggccucggg	chr4:1229550-1229798(-)$1	248	152	189	11.7998
GCGGCUGCGGCGCGCUCGGAGCCCCGAGGGCACGCGG	chr16:75285405-75285652(-)$1	247	177	214	12.0443
GCUGGGGGUGGGCAGAGGUCUUUGCCAUCUGCCCCCU	chr16:75297695-75297952(-)$1	257	43	80	11.1837
CCCGUGGAAGUGGGAGGAGGUGGCGCCGGGACUUUAA	chr17:43225927-43226209(+)$1	282	138	175	11.0433
CUUCUGCCCAGCAACCGGCGCGAGCCGCGCGCUGUGC	chr14:105714725-105714965(-)$1	240	172	209	12.5099
CCCGCGAGGAGGGCGCggcgcaggcggcggcggcgcg	chr6:41514189-41514434(+)$1	245	33	70	14.5698
UGUAGGUGGGGGGGCCGCCGGCAGGCCGGUGUCUGGA	chr4:1228547-1228834(-)$1	287	112	149	12.5848
CGUGCGCGGCCCGGGCAGUCUCUGCGAGCCCGGGCUG	chr9:139715774-139716050(+)$1	276	189	226	11.2680
UCACUUUUCGUGGUCGGCCUGCUGGCGGAAAUGGGAG	chr9:134350650-134350917(+)$1	267	86	123	11.4449
CGCUCCCgggccgggggcggaugggcggccgcgggcc	chr1:1284447-1284710(-)$1	263	24	61	10.4553

#DB
(..((((((((((.(((((....))))).))))).))	chr7:1007856-1008167(-)$1	1	60	97	10.7495
(((((((((.(((.((((......))))..))).)))	chr12:104697462-104697747(+)$1	1	11	48	12.1189
.(((((((((.....((((....))))..))))))))	chr14:105715317-105715582(-)$1	1	131	168	12.7695
(((((((((.(((((.((.....)).)))..)).)))	chr19:59074102-59074382(+)$1	1	130	167	10.9457
(((....((((..((((((....))))))...)))).	chr22:45724716-45724979(+)$1	1	158	195	10.7256
.(((((...((((.(((((....)))))..)))))))	chr11:65381128-65381399(-)$1	1	176	213	10.5818
(((.((((..((((.(.((......)).).))))...	chr7:150069988-150070237(+)$1	1	48	85	10.2312
..((((((..(((((((((....))))))))).))))	chr16:89346251-89346497(-)$1	1	61	98	13.2374
((.((.((...(((((((((...))))))))).)).)	chr2:242447501-242447763(-)$1	1	100	137	10.1971
(.((((((((((..(.(((....))).)..)))..))	chr17:74380016-74380295(+)$1	1	222	259	14.3221
)).(((((..((.(((.((....))))).)).)))))	chr16:8942446-8942728(+)$1	1	137	174	11.7551
..((((((...(((.((((....))))..)))..)))	chr17:74380641-74380896(+)$1	1	106	143	12.3104
(.(((((((.(.(((((((....))))))))))))))	chr17:80197768-80198012(+)$1	1	37	74	13.8763
(((((((...(((((..((....))..))).))....	chr16:89346795-89347072(-)$1	1	48	85	11.7939
(((((((((...(..(((.....)))..).)))))))	chr14:23451425-23451717(-)$1	1	92	129	12.9370
.(((.(((((((.((((((....))))))))))))).	chr20:62330534-62330760(-)$1	1	114	151	12.1139
(..((((((.((.((.(((...))).)).)).)))))	chr5:176873698-176873997(-)$1	1	54	91	10.4920
).(((((((.(...((((....))))...).))))))	chr2:227663840-227664132(-)$1	1	245	282	11.6637
(((....((..((((((((......).)))))))...	chr8:144679309-144679557(-)$1	1	58	95	11.1865
(...((((((..((((((....).))).).)..))))	chr7:148921649-148921908(+)$1	1	56	93	11.5329
.)))))((.((((((((((....))).))))))))).	chr16:75297869-75298110(-)$1	1	201	238	11.1837
(((((((((...(((.(.(.....).))))...))))	chr2:202002059-202002356(+)$1	1	206	243	12.8553
((((((.(((((..(((......)))...))))))))	chr16:24801582-24801828(+)$1	1	59	96	11.2722
)).))).(((.(.(((.((....)).))).).)))((	chr1:2160056-2160328(+)$1	1	77	114	11.6778
(((...(((((..((((((....)))))).)))))..	chr19:2270116-2270391(+)$1	1	106	143	11.3481
(..(((.((....((.(((......))).))...)).	chr4:1229146-1229430(-)$1	1	60	97	11.6330
.((.(((((((.(((.((.....)).)))))))))).	chr9:127020433-127020709(+)$1	1	77	114	10.4544
(((.(((.(.(((..((((.....))))..)))).))	chr19:45166555-45166867(+)$1	1	204	241	10.2369
(((((((.(.(((((((((....)).)))))).).).	chr7:76255990-76256273(+)$1	1	215	252	12.8995
..(((((((((((...(((....))))))))))))))	chr4:763946-764202(-)$1	1	169	206	15.4850
(.(((.(((.(((..(((......)))..))))))))	chr14:105714209-105714500(-)$1	1	91	128	12.6080
((((.((((((((((((((....)))...))))))).	chrX:20284770-20285040(-)$1	1	184	221	12.1034
((.(((((..((((((.((....))))))))..))))	chr2:202001724-202002101(+)$1	1	23	60	11.7900
(((((((.(.(((...(((....)))..))).)))))	chr18:55711519-55711796(+)$1	1	43	80	12.2772
(.((((.(...(((((((((...)))...)).)))).	chr7:77166609-77166977(+)$1	1	253	290	10.6063
(((((((((....((((((....)).))))...))))	chr11:706040-706293(-)$1	1	61	98	14.1246
(.(((((..((((((.(((......)))))))))..)	chr14:105714041-105714378(-)$1	1	60	97	10.5322
...((((((.....(((......)))))).))).)))	chr19:56166196-56166485(+)$1	1	229	266	12.1195
((.(((((.(((((..(((....))))))))))))).	chr7:1132503-1132744(-)$1	1	192	229	11.8843
(((((((....((((((((....))))))))....))	chr8:144678729-144678998(-)$1	1	196	233	11.2034
..((((.(..(((((..((....)).)))))..)...	chr15:43662878-43663210(-)$1	1	181	218	11.4194
((((((((((((.(((.((....))...)))))))))	chr8:144671086-144671337(-)$1	1	62	99	12.0321
(...((((((..(((((......)))))...))))))	chr19:1911810-1912102(+)$1	1	144	181	10.5015
)(.((((((.(.(((((((....)).))))).).)))	chrX:153774925-153775180(+)$1	1	180	217	11.4910
(.((((((((((..(.(((....))).)..)))..))	chr17:74380190-74380435(+)$1	1	48	85	14.3221
(((((...(.(.((((((.....)))))).).)...)	chr3:195622690-195622959(-)$1	1	44	81	10.9129
(.(((((.(.(((..((((....))))..).))))))	chr7:127671510-127671764(+)$1	1	156	193	11.8157
.(((((...((((((.(((....)))...)).)))).	chr16:8941585-8941855(+)$1	1	148	185	12.2094
...(((((((((...((......)).))).)))))))	chr16:87736814-87737083(-)$1	1	200	237	11.0014
(..(((((((..(((..((....))))).))))))).	chr16:87732286-87732540(-)$1	1	149	186	14.1861
...(((.((((((((..((....))..))).))))).	chr8:144343387-144343663(+)$1	1	134	171	12.0825
((.....((((....(.((....)).)...)))))))	chr4:1229550-1229798(-)$1	1	152	189	11.7998
))(((((((..((.(((((....))))).)).)))))	chr16:75285405-75285652(-)$1	1	177	214	12.0443
.)))))((.((((((((((....))).))))))))).	chr16:75297695-75297952(-)$1	1	43	80	11.1837
)))((.(((((....((.(....).))...))))).)	chr17:43225927-43226209(+)$1	1	138	175	11.0433
(((((((.((((...((((....))))...)))).))	chr14:105714725-105714965(-)$1	1	172	209	12.5099
(((((...(..(.(((.((....)).))).)..)...	chr6:41514189-41514434(+)$1	1	33	70	14.5698
(((.(((..(((.((((((....)).)))).)))...	chr4:1228547-1228834(-)$1	1	112	149	12.5848
...(((((((((((((.((....))..))))))))))	chr9:139715774-139716050(+)$1	1	189	226	11.2680
((.((((.(((..((.(((....))).)).)))))))	chr9:134350650-134350917(+)$1	1	86	123	11.4449
.((((((((.(((.((.((......)).)).))).))	chr1:1284447-1284710(-)$1	1	24	61	10.4553

#PSSM
d : 0.14	! : 0.09	e : 0.09	c : 0.08	b : 0.08	i : 0.06	g : 0.06	h : 0.04	a : 0.04	f : 0.04	] : 0.03	= : 0.03	: : 0.03	" : 0.03	& : 0.01	B : 0.01	# : 0.01	$ : 0.01	[ : 0.01	
e : 0.16	! : 0.11	[ : 0.11	i : 0.08	d : 0.08	b : 0.06	" : 0.06	g : 0.06	h : 0.04	f : 0.04	c : 0.03	: : 0.03	= : 0.03	& : 0.01	a : 0.01	$ : 0.01	
e : 0.14	g : 0.13	d : 0.09	i : 0.08	f : 0.08	[ : 0.08	! : 0.06	" : 0.06	c : 0.04	= : 0.04	: : 0.03	h : 0.03	b : 0.03	$ : 0.03	] : 0.01	
e : 0.19	g : 0.14	f : 0.09	c : 0.09	i : 0.08	[ : 0.06	b : 0.06	d : 0.06	" : 0.04	= : 0.04	# : 0.03	h : 0.03	$ : 0.01	
e : 0.19	g : 0.14	f : 0.13	c : 0.13	i : 0.08	d : 0.08	b : 0.04	= : 0.04	# : 0.03	h : 0.03	[ : 0.03	" : 0.01	$ : 0.01	
e : 0.18	g : 0.14	f : 0.13	c : 0.11	d : 0.09	i : 0.08	= : 0.06	[ : 0.04	" : 0.04	# : 0.03	h : 0.03	$ : 0.01	
g : 0.14	e : 0.13	f : 0.13	c : 0.09	i : 0.08	[ : 0.08	" : 0.06	= : 0.06	d : 0.04	b : 0.04	# : 0.03	h : 0.03	: : 0.01	$ : 0.01	
e : 0.13	f : 0.13	g : 0.13	[ : 0.09	" : 0.08	b : 0.08	i : 0.06	d : 0.06	= : 0.06	c : 0.06	a : 0.03	! : 0.03	# : 0.01	
g : 0.13	! : 0.11	" : 0.09	f : 0.09	a : 0.09	e : 0.08	c : 0.08	i : 0.06	d : 0.06	= : 0.06	[ : 0.04	b : 0.03	# : 0.01	
[ : 0.21	! : 0.13	e : 0.09	" : 0.09	c : 0.09	g : 0.09	d : 0.08	f : 0.06	# : 0.04	= : 0.03	i : 0.01	$ : 0.01	
c : 0.16	e : 0.11	d : 0.09	! : 0.09	b : 0.08	" : 0.08	a : 0.08	g : 0.08	# : 0.04	f : 0.04	$ : 0.03	= : 0.03	i : 0.01	[ : 0.01	
c : 0.16	b : 0.09	! : 0.09	e : 0.08	d : 0.08	g : 0.08	[ : 0.06	# : 0.06	f : 0.06	" : 0.04	$ : 0.03	i : 0.03	a : 0.03	= : 0.03	h : 0.01	
c : 0.19	[ : 0.11	! : 0.09	e : 0.08	g : 0.08	d : 0.06	# : 0.06	f : 0.06	a : 0.04	" : 0.04	$ : 0.03	i : 0.03	= : 0.03	h : 0.01	b : 0.01	
c : 0.18	f : 0.11	! : 0.11	[ : 0.08	g : 0.08	" : 0.08	d : 0.06	b : 0.06	e : 0.06	$ : 0.03	i : 0.03	# : 0.03	a : 0.01	h : 0.01	= : 0.01	
c : 0.21	f : 0.11	e : 0.09	d : 0.08	g : 0.08	! : 0.08	b : 0.08	" : 0.06	[ : 0.03	i : 0.03	a : 0.03	# : 0.03	$ : 0.01	h : 0.01	= : 0.01	
[ : 0.16	d : 0.14	c : 0.14	f : 0.09	e : 0.08	g : 0.08	! : 0.08	b : 0.06	a : 0.03	i : 0.03	" : 0.03	h : 0.01	= : 0.01	
c : 0.29	d : 0.14	[ : 0.14	e : 0.08	b : 0.08	f : 0.08	! : 0.06	i : 0.03	g : 0.03	a : 0.01	h : 0.01	
b : 0.31	c : 0.26	d : 0.11	f : 0.06	o : 0.06	e : 0.04	i : 0.03	g : 0.03	[ : 0.03	a : 0.01	h : 0.01	
b : 0.27	c : 0.22	o : 0.09	d : 0.08	n : 0.06	e : 0.04	f : 0.04	a : 0.04	i : 0.03	m : 0.03	g : 0.01	h : 0.01	
m : 0.67	o : 0.18	n : 0.09	i : 0.01	l : 0.01	c : 0.01	
m : 0.67	o : 0.18	n : 0.09	l : 0.04	
m : 0.67	o : 0.18	n : 0.09	l : 0.04	
m : 0.63	o : 0.18	n : 0.09	l : 0.03	c : 0.01	d : 0.01	a : 0.01	
b : 0.29	c : 0.24	o : 0.11	d : 0.08	e : 0.06	f : 0.06	i : 0.03	n : 0.03	g : 0.01	] : 0.01	h : 0.01	a : 0.01	
b : 0.29	c : 0.27	d : 0.11	o : 0.08	e : 0.06	f : 0.06	i : 0.03	g : 0.01	a : 0.01	h : 0.01	] : 0.01	
c : 0.32	] : 0.21	d : 0.11	f : 0.08	e : 0.06	b : 0.04	2 : 0.04	i : 0.03	g : 0.01	a : 0.01	h : 0.01	3 : 0.01	
c : 0.19	d : 0.13	e : 0.11	f : 0.09	] : 0.09	3 : 0.09	2 : 0.08	b : 0.06	i : 0.03	a : 0.03	g : 0.01	= : 0.01	h : 0.01	
c : 0.21	3 : 0.14	e : 0.11	2 : 0.09	f : 0.09	d : 0.06	g : 0.06	] : 0.04	i : 0.03	a : 0.03	b : 0.03	= : 0.03	h : 0.01	
c : 0.18	2 : 0.14	3 : 0.14	f : 0.11	] : 0.09	g : 0.06	a : 0.04	e : 0.04	i : 0.03	= : 0.03	d : 0.03	b : 0.03	h : 0.01	
] : 0.16	g : 0.13	b : 0.11	c : 0.11	2 : 0.09	e : 0.08	3 : 0.08	i : 0.04	f : 0.04	a : 0.03	= : 0.03	d : 0.03	h : 0.01	
c : 0.16	e : 0.11	g : 0.11	b : 0.09	] : 0.09	a : 0.08	i : 0.06	3 : 0.06	d : 0.06	f : 0.06	= : 0.03	2 : 0.01	h : 0.01	
c : 0.16	] : 0.14	g : 0.14	e : 0.09	f : 0.08	i : 0.06	3 : 0.06	d : 0.06	2 : 0.06	b : 0.04	= : 0.03	4 : 0.01	
c : 0.16	g : 0.16	e : 0.11	d : 0.11	2 : 0.08	f : 0.08	b : 0.04	] : 0.04	3 : 0.04	a : 0.04	i : 0.03	= : 0.03	4 : 0.01	
g : 0.16	e : 0.13	d : 0.13	f : 0.11	a : 0.08	] : 0.06	= : 0.06	c : 0.06	2 : 0.04	i : 0.03	4 : 0.03	3 : 0.03	b : 0.01	h : 0.01	
e : 0.14	f : 0.14	g : 0.13	] : 0.08	3 : 0.08	i : 0.06	d : 0.06	b : 0.06	= : 0.06	2 : 0.04	4 : 0.04	c : 0.03	h : 0.01	
g : 0.18	f : 0.14	e : 0.13	3 : 0.09	i : 0.08	d : 0.08	= : 0.06	b : 0.04	c : 0.04	] : 0.03	4 : 0.03	a : 0.01	h : 0.01	2 : 0.01	
f : 0.13	g : 0.13	e : 0.11	] : 0.09	3 : 0.09	i : 0.08	= : 0.06	b : 0.04	c : 0.04	4 : 0.03	2 : 0.03	: : 0.03	d : 0.03	5 : 0.03	h : 0.01	

#score	724.7163797799362
#seq	61
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_CDS_m3_run1.txt

#BEAR
hhhhhhh[ammmma]hhhhhh	chr17:41622526-41622805(+)$1	279	252	273	15.3826
iiiiiiiiimmmmiiiiiiii	chr6:31919696-31919947(+)$1	251	169	190	11.0228
hhhhhh[annnnna]hhhhhh	chr17:36453084-36453371(+)$1	287	208	229	13.5785
hhhhhhhhnnnnnhhhhhhhh	chr3:195796304-195796540(-)$1	236	198	219	14.9795
bhhhhhhhhmmmmhhhhhhhh	chr14:31647130-31647383(-)$1	253	205	226	16.2913
!hhhhhhhhmmmmhhhhhhhh	chr10:696824-697131(-)$1	307	172	193	16.5060
''hhhhhhhhlllhhhhhhhh	chr3:49050497-49050788(+)$1	291	129	150	14.2968
::hhhhhhhhlllhhhhhhhh	chr2:62100036-62100316(-)$1	280	255	276	13.3827
Fhhhhhhhhmmmmhhhhhhhh	chr22:29684629-29684877(+)$1	248	13	34	15.9301

#otherMatches

#Seq PSSM
UUAGUCUGGGGGACGAGGUUG	chr17:41622526-41622805(+)$1	279	252	273	15.3826
UGUUCCAGAUCCUUUUGGGGC	chr6:31919696-31919947(+)$1	251	169	190	11.0228
UGUCCUUGGUGAGCUGGGACA	chr17:36453084-36453371(+)$1	287	208	229	13.5785
UCACCUUUGCAGAAAAGGUGA	chr3:195796304-195796540(-)$1	236	198	219	14.9795
GGGAUGAGUAUUGGCUCAUUU	chr14:31647130-31647383(-)$1	253	205	226	16.2913
GGCUGGGGCCUGAGCCCUGGC	chr10:696824-697131(-)$1	307	172	193	16.5060
UUCACUGGGUUGGGCCCAGUG	chr3:49050497-49050788(+)$1	291	129	150	14.2968
gagacggagucucacucuguc	chr2:62100036-62100316(-)$1	280	255	276	13.3827
AGUCUGGAGGAUUUUCCGGAC	chr22:29684629-29684877(+)$1	248	13	34	15.9301

#DB
(((((((.(....).))))))	chr17:41622526-41622805(+)$1	1	252	273	15.3826
(((((((((....))))))))	chr6:31919696-31919947(+)$1	1	169	190	11.0228
((((((.(.....).))))))	chr17:36453084-36453371(+)$1	1	208	229	13.5785
((((((((.....))))))))	chr3:195796304-195796540(-)$1	1	198	219	14.9795
(((((((((....))))))))	chr14:31647130-31647383(-)$1	1	205	226	16.2913
.((((((((....))))))))	chr10:696824-697131(-)$1	1	172	193	16.5060
..((((((((...))))))))	chr3:49050497-49050788(+)$1	1	129	150	14.2968
..((((((((...))))))))	chr2:62100036-62100316(-)$1	1	255	276	13.3827
(((((((((....))))))))	chr22:29684629-29684877(+)$1	1	13	34	15.9301

#PSSM
h : 0.33	i : 0.11	b : 0.11	! : 0.11	' : 0.11	: : 0.11	F : 0.11	
h : 0.66	i : 0.11	' : 0.11	: : 0.11	
h : 0.88	i : 0.11	
h : 0.88	i : 0.11	
h : 0.88	i : 0.11	
h : 0.88	i : 0.11	
h : 0.77	i : 0.11	[ : 0.11	
h : 0.66	[ : 0.11	i : 0.11	a : 0.11	
h : 0.55	n : 0.22	a : 0.11	i : 0.11	
m : 0.55	n : 0.22	h : 0.22	
m : 0.55	n : 0.22	l : 0.22	
m : 0.55	n : 0.22	l : 0.22	
m : 0.55	n : 0.22	l : 0.22	
h : 0.66	a : 0.22	i : 0.11	
h : 0.66	] : 0.22	i : 0.11	
h : 0.88	i : 0.11	
h : 0.88	i : 0.11	
h : 0.88	i : 0.11	
h : 0.88	i : 0.11	
h : 0.88	i : 0.11	
h : 0.88	i : 0.11	

#score	131.3708494521333
#seq	9
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_CDS_m2_run1.txt

#BEAR
cIIIIIIIIIZZZBB}A	chr1:33236040-33236288(+)$1	248	199	216	11.3169
JJJJJJJJJJ}DDDD}B	chr11:637257-637535(+)$1	278	236	253	10.7320
eIIIIIIIII}DDDD::	chr3:9711015-9711275(+)$1	260	191	208	9.0386
}IIIIIIIIIZZZCCCC	chr11:66392569-66392798(+)$1	229	172	189	12.0465
C}HHHHHHHHYYBB}CC	chr7:100174751-100175019(-)$1	268	184	201	11.1969
EEE}FFFFFFYYBB}DD	chr12:132402869-132403140(+)$1	271	179	196	9.7685
::A}FFFFFFYYDDDD}	chr4:6863455-6863786(+)$1	331	302	319	9.0213
fIIIIIIIIIDDDD}CC	chr11:639288-639567(+)$1	279	258	275	8.9665
GGG}FFFFFFYYA}DDD	chr9:140323182-140323436(+)$1	254	140	157	9.4113
FFFFFFFFFFZZZDDDD	chr7:100171716-100171993(-)$1	277	214	231	9.2883
_HHHHHHHH}EEEEE::	chr12:57624649-57624933(+)$1	284	266	283	9.0960
::IIIIIIIII}EEEEE	chr9:139904818-139905104(-)$1	286	268	285	9.9391
~IIIIIIIIIYYCCC~~	chr19:47778061-47778339(+)$1	278	230	247	13.3414
??IIIIIIIIICCCYYB	chr16:725959-726250(+)$1	291	273	290	9.7243
DDD}FFFFFFYYCCC}B	chr22:19711777-19712001(+)$1	224	172	189	9.8303
JJJJJJJJJJ}EEEEE}	chr16:67199429-67199690(+)$1	261	190	207	11.1225
:IIIIIIIIIFFFFFF}	chr12:132401763-132402074(+)$1	311	193	210	9.5151
JJJJJJJJJJBB}A}DD	chr19:49964846-49965122(+)$1	276	243	260	10.7078
}IIIIIIIIIDDDDBB:	chr7:77166748-77166983(+)$1	235	217	234	10.2281
YJJJJJJJJJJ}DDDD:	chr22:51020657-51020956(-)$1	299	280	297	10.2560
BB}GGGGGGGYYCCC}B	chr10:101379863-101380186(-)$1	323	302	319	10.0927
YIIIIIIIIIYYCCC}F	chr7:128480842-128481089(+)$1	247	202	219	12.6934
EEE}GGGGGGG}CCCYY	chr9:139904712-139904986(-)$1	274	185	202	8.0065
D{HHHHHHHHCCCKKDD	chr22:50873278-50873543(+)$1	265	6	23	7.7617
:HHHHHHHH~~~~DDDD	chr16:89367079-89367343(-)$1	264	220	237	10.2812
ZCCCFFFFFFYYBB~~~	chr14:31495152-31495415(-)$1	263	227	244	9.5120
A}HHHHHHHHYYCCCDD	chr10:72468246-72468496(+)$1	250	231	248	11.7532
CCFFFFFF}AYYCCCDD	chr19:1104611-1104910(+)$1	299	274	291	9.8419
JJJJJJJJJJ?????BB	chr22:50016963-50017204(-)$1	241	164	181	9.6139
DIIIIIIIIIYYCCCDD	chr22:50016771-50017013(-)$1	242	215	232	12.7678
HHHHHHH}A}EEEEE~~	chr6:3259324-3259594(+)$1	270	207	224	9.7602
CCC}FFFFFFYYCCCYY	chr19:2425958-2426272(-)$1	314	256	273	10.1233
cHHHHHHHH~~~~DDDD	chr21:45735929-45736232(+)$1	303	240	257	9.9633
CC}FFFFFFA~~~~DDD	chr19:5719961-5720213(-)$1	252	212	229	9.5775
EEEE}EEEEEYYCCC}B	chr10:72503652-72503958(+)$1	306	263	280	7.5028
?JJJJJJJJJJ______	chr19:50434143-50434380(+)$1	237	160	177	10.4357
GGGGGGG}BBZZZCCC}	chr17:80016442-80016717(-)$1	275	161	178	7.8946
D}HHHHHHHHYYCCC~~	chr9:139250028-139250304(+)$1	276	232	249	12.0578
D}HHHHHHHHYYCCC::	chr11:534147-534460(-)$1	313	119	136	10.6139
ZIIIIIIIIIEEEEEYY	chr17:46131916-46132230(+)$1	314	281	298	11.6452
DDHHHHHHHHYYDDDD}	chr17:80218672-80218914(-)$1	242	191	208	10.7621
:HHHHHHHHZZZEEEEE	chr9:15469198-15469435(-)$1	237	107	124	9.5851

#otherMatches

#Seq PSSM
GGAGUGUGUCCCUGCGU	chr1:33236040-33236288(+)$1	248	199	216	11.3169
GCCCUGCAGACGCCCAC	chr11:637257-637535(+)$1	278	236	253	10.7320
UGUGUUGGGGAUGGGGU	chr3:9711015-9711275(+)$1	260	191	208	9.0386
GGUUGUGCAGACCCAGC	chr11:66392569-66392798(+)$1	229	172	189	12.0465
GAGCCCCGCUGAGCCGU	chr7:100174751-100175019(-)$1	268	184	201	11.1969
CACUGGCUCUGCCAGCU	chr12:132402869-132403140(+)$1	271	179	196	9.7685
AAUGUUGCAUAGUGUUA	chr4:6863455-6863786(+)$1	331	302	319	9.0213
UGcgccgcccuccccgc	chr11:639288-639567(+)$1	279	258	275	8.9665
CCCACUCCCAGGUGCUA	chr9:140323182-140323436(+)$1	254	140	157	9.4113
GUGGCCUGGGCCUGGGC	chr7:100171716-100171993(-)$1	277	214	231	9.2883
AUCUCCCUCAAGCAAAG	chr12:57624649-57624933(+)$1	284	266	283	9.0960
GGCUCCUGGCCAGGUCU	chr9:139904818-139905104(-)$1	286	268	285	9.9391
GCGUCUCGCUAGCUGCC	chr19:47778061-47778339(+)$1	278	230	247	13.3414
GUGCUGGGAGCCUGAGC	chr16:725959-726250(+)$1	291	273	290	9.7243
CGCUGGUGGCCGAGCGA	chr22:19711777-19712001(+)$1	224	172	189	9.8303
AGACGGUUUUCGGAAGG	chr16:67199429-67199690(+)$1	261	190	207	11.1225
ACCCUCAGCUGGCUUUG	chr12:132401763-132402074(+)$1	311	193	210	9.5151
GGCUGGGGGCCGCAAGG	chr19:49964846-49965122(+)$1	276	243	260	10.7078
AGUCUCUCCCCUCGCUG	chr7:77166748-77166983(+)$1	235	217	234	10.2281
UGAGGGGGGUGUGAGCG	chr22:51020657-51020956(-)$1	299	280	297	10.2560
CCACUGUCACCACGCAC	chr10:101379863-101380186(-)$1	323	302	319	10.0927
AGGAGGGAGUGCUGCGG	chr7:128480842-128481089(+)$1	247	202	219	12.6934
GCCGUAUCCUGGCCGUU	chr9:139904712-139904986(-)$1	274	185	202	8.0065
CACUUGCUCUCCGAAGU	chr22:50873278-50873543(+)$1	265	6	23	7.7617
UUCCUGACGUCAUGUUU	chr16:89367079-89367343(-)$1	264	220	237	10.2812
ACUGCACUACAUCCAGC	chr14:31495152-31495415(-)$1	263	227	244	9.5120
GUUCGCUUCCAUGGCAA	chr10:72468246-72468496(+)$1	250	231	248	11.7532
CUUGCGACCGGAGAUCC	chr19:1104611-1104910(+)$1	299	274	291	9.8419
AGGGCCCCUGGGUUACU	chr22:50016963-50017204(-)$1	241	164	181	9.6139
gucucucccacugucuc	chr22:50016771-50017013(-)$1	242	215	232	12.7678
GCGCCCUACUCCCCCGA	chr6:3259324-3259594(+)$1	270	207	224	9.7602
GGCCGGCCACAGCCAUA	chr19:2425958-2426272(-)$1	314	256	273	10.1233
AGGGUGCCAUUGACCGC	chr21:45735929-45736232(+)$1	303	240	257	9.9633
CCUCUCCUCCUUGGGCA	chr19:5719961-5720213(-)$1	252	212	229	9.5775
GGACGCUGGGCAAGGCC	chr10:72503652-72503958(+)$1	306	263	280	7.5028
UGGAGCUGGGGAGUGGA	chr19:50434143-50434380(+)$1	237	160	177	10.4357
UGGGUUUGCAACGUGGC	chr17:80016442-80016717(-)$1	275	161	178	7.8946
CGAGGCCACGGCCGCCC	chr9:139250028-139250304(+)$1	276	232	249	12.0578
CGCAGGCCCCUGAGGAG	chr11:534147-534460(-)$1	313	119	136	10.6139
UGGAGGAAGGGGGCUGG	chr17:46131916-46132230(+)$1	314	281	298	11.6452
UACACCAUCAGucagua	chr17:80218672-80218914(-)$1	242	191	208	10.7621
CAAUGGAUUCUCGACUU	chr9:15469198-15469435(-)$1	237	107	124	9.5851

#DB
))))))))))...)).)	chr1:33236040-33236288(+)$1	1	199	216	11.3169
)))))))))).)))).)	chr11:637257-637535(+)$1	1	236	253	10.7320
)))))))))).))))..	chr3:9711015-9711275(+)$1	1	191	208	9.0386
.)))))))))...))))	chr11:66392569-66392798(+)$1	1	172	189	12.0465
).))))))))..)).))	chr7:100174751-100175019(-)$1	1	184	201	11.1969
))).))))))..)).))	chr12:132402869-132403140(+)$1	1	179	196	9.7685
..).))))))..)))).	chr4:6863455-6863786(+)$1	1	302	319	9.0213
)))))))))))))).))	chr11:639288-639567(+)$1	1	258	275	8.9665
))).))))))..).)))	chr9:140323182-140323436(+)$1	1	140	157	9.4113
))))))))))...))))	chr7:100171716-100171993(-)$1	1	214	231	9.2883
.)))))))).)))))..	chr12:57624649-57624933(+)$1	1	266	283	9.0960
..))))))))).)))))	chr9:139904818-139905104(-)$1	1	268	285	9.9391
.)))))))))..)))..	chr19:47778061-47778339(+)$1	1	230	247	13.3414
..))))))))))))..)	chr16:725959-726250(+)$1	1	273	290	9.7243
))).))))))..))).)	chr22:19711777-19712001(+)$1	1	172	189	9.8303
)))))))))).))))).	chr16:67199429-67199690(+)$1	1	190	207	11.1225
.))))))))))))))).	chr12:132401763-132402074(+)$1	1	193	210	9.5151
)))))))))))).).))	chr19:49964846-49965122(+)$1	1	243	260	10.7078
.))))))))))))))).	chr7:77166748-77166983(+)$1	1	217	234	10.2281
.)))))))))).)))).	chr22:51020657-51020956(-)$1	1	280	297	10.2560
)).)))))))..))).)	chr10:101379863-101380186(-)$1	1	302	319	10.0927
.)))))))))..))).)	chr7:128480842-128481089(+)$1	1	202	219	12.6934
))).))))))).)))..	chr9:139904712-139904986(-)$1	1	185	202	8.0065
(.(((((((((((..((	chr22:50873278-50873543(+)$1	1	6	23	7.7617
.))))))))....))))	chr16:89367079-89367343(-)$1	1	220	237	10.2812
.)))))))))..))...	chr14:31495152-31495415(-)$1	1	227	244	9.5120
).))))))))..)))))	chr10:72468246-72468496(+)$1	1	231	248	11.7532
)))))))).)..)))))	chr19:1104611-1104910(+)$1	1	274	291	9.8419
)))))))))).....))	chr22:50016963-50017204(-)$1	1	164	181	9.6139
))))))))))..)))))	chr22:50016771-50017013(-)$1	1	215	232	12.7678
))))))).).)))))..	chr6:3259324-3259594(+)$1	1	207	224	9.7602
))).))))))..)))..	chr19:2425958-2426272(-)$1	1	256	273	10.1233
)))))))))....))))	chr21:45735929-45736232(+)$1	1	240	257	9.9633
)).)))))))....)))	chr19:5719961-5720213(-)$1	1	212	229	9.5775
)))).)))))..))).)	chr10:72503652-72503958(+)$1	1	263	280	7.5028
.))))))))))......	chr19:50434143-50434380(+)$1	1	160	177	10.4357
))))))).))...))).	chr17:80016442-80016717(-)$1	1	161	178	7.8946
).))))))))..)))..	chr9:139250028-139250304(+)$1	1	232	249	12.0578
).))))))))..)))..	chr11:534147-534460(-)$1	1	119	136	10.6139
.))))))))))))))..	chr17:46131916-46132230(+)$1	1	281	298	11.6452
))))))))))..)))).	chr17:80218672-80218914(-)$1	1	191	208	10.7621
.))))))))...)))))	chr9:15469198-15469435(-)$1	1	107	124	9.5851

#PSSM
D : 0.14	: : 0.11	J : 0.09	C : 0.09	E : 0.07	c : 0.04	} : 0.04	G : 0.04	? : 0.04	Y : 0.04	Z : 0.04	e : 0.02	f : 0.02	F : 0.02	_ : 0.02	~ : 0.02	B : 0.02	A : 0.02	H : 0.02	
I : 0.23	J : 0.14	H : 0.11	} : 0.09	C : 0.09	E : 0.07	: : 0.04	G : 0.04	D : 0.04	F : 0.02	? : 0.02	B : 0.02	{ : 0.02	
I : 0.28	H : 0.26	J : 0.14	E : 0.07	G : 0.04	F : 0.04	} : 0.04	C : 0.04	A : 0.02	D : 0.02	
I : 0.28	H : 0.26	J : 0.14	} : 0.14	F : 0.07	G : 0.04	C : 0.02	E : 0.02	
I : 0.28	H : 0.26	F : 0.21	J : 0.14	G : 0.07	} : 0.02	
I : 0.28	H : 0.26	F : 0.21	J : 0.14	G : 0.07	E : 0.02	
I : 0.28	H : 0.26	F : 0.21	J : 0.14	G : 0.07	E : 0.02	
I : 0.28	H : 0.23	F : 0.21	J : 0.14	G : 0.04	} : 0.04	E : 0.02	
I : 0.28	H : 0.23	F : 0.19	J : 0.14	G : 0.04	} : 0.02	A : 0.02	E : 0.02	B : 0.02	
I : 0.28	F : 0.16	J : 0.14	H : 0.14	} : 0.04	G : 0.04	~ : 0.04	A : 0.04	E : 0.02	B : 0.02	Z : 0.02	
Y : 0.40	Z : 0.11	} : 0.07	E : 0.07	~ : 0.07	D : 0.04	I : 0.04	J : 0.04	F : 0.02	B : 0.02	G : 0.02	C : 0.02	? : 0.02	
Y : 0.40	Z : 0.11	D : 0.09	E : 0.09	} : 0.07	~ : 0.07	C : 0.04	F : 0.02	B : 0.02	? : 0.02	_ : 0.02	
C : 0.33	D : 0.16	E : 0.14	Z : 0.09	B : 0.07	~ : 0.07	A : 0.02	F : 0.02	} : 0.02	? : 0.02	_ : 0.02	
C : 0.35	D : 0.23	E : 0.14	B : 0.09	} : 0.02	F : 0.02	A : 0.02	K : 0.02	? : 0.02	~ : 0.02	_ : 0.02	
C : 0.33	D : 0.23	E : 0.14	} : 0.09	B : 0.04	Y : 0.02	F : 0.02	K : 0.02	~ : 0.02	? : 0.02	_ : 0.02	
D : 0.33	} : 0.14	C : 0.09	~ : 0.09	Y : 0.09	: : 0.07	E : 0.07	B : 0.04	F : 0.02	_ : 0.02	
D : 0.26	B : 0.14	: : 0.11	} : 0.11	~ : 0.09	C : 0.07	Y : 0.07	E : 0.04	A : 0.02	F : 0.02	_ : 0.02	

#score	426.79540707940475
#seq	42
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_UTR_m2_run2.txt

#BEAR
[bbvvvvvvvvvvvv	chr17:47126704-47127038(+)$1	334	234	249	20.3848
eeettttttttttte	chr11:2152584-2152792(-)$1	208	34	49	22.0004
hhhttttttttttth	chr12:57606421-57606658(+)$1	237	29	44	20.6724
bbvvvvvvvvvvvvv	chr11:2152718-2152923(-)$1	205	100	115	20.5705
eeettttttttttte	chr17:47126921-47127158(+)$1	237	197	212	22.0004
eeettttttttttte	chr11:2152698-2152906(-)$1	208	148	163	22.0004
evvvvvvvvvvvvve	chr8:30535682-30535953(-)$1	271	228	243	20.2230
eeettttttttttte	chr12:133298478-133298764(+)$1	286	88	103	22.0004
eeettttttttttte	chr11:2152663-2152870(-)$1	207	112	127	22.0004
eeettttttttttte	chr11:2152627-2152829(-)$1	202	71	86	22.0004
bbvvvvvvvvvvvvv	chr11:2152675-2152880(-)$1	205	57	72	20.5705
bbvvvvvvvvvvvvv	chr11:2152695-2152898(-)$1	203	75	90	20.5705
fffvvvvvvvvvvvv	chr17:79780915-79781165(-)$1	250	208	223	20.4390
[bbvvvvvvvvvvvv	chr17:47126843-47127097(+)$1	254	95	110	20.3848
gggwwwwwwwwwwww	chr16:89980035-89980338(+)$1	303	25	40	18.8076
bbuuuuuuuuuuuub	chr11:2153184-2153388(-)$1	204	105	120	20.0915
eeettttttttttte	chr11:2152652-2152858(-)$1	206	100	115	22.0004
eeettttttttttte	chr11:2152671-2152875(-)$1	204	117	132	22.0004
gggwwwwwwwwwwww	chr12:51325296-51325560(+)$1	264	139	154	18.8076
ccctttttttttttc	chr19:11560267-11560492(+)$1	225	56	71	21.4361
dddtttttttttttd	chr19:6414372-6414622(-)$1	250	95	110	21.3473
ccuuuuuuuuuuuuc	chr2:170606080-170606400(+)$1	320	156	171	20.5109
gggwwwwwwwwwwww	chr5:42800354-42800611(-)$1	257	206	221	18.8076
"bbuuuuuuuuuuuu	chr11:2153188-2153392(-)$1	204	108	123	20.5641
eeettttttttttte	chr11:2152622-2152827(-)$1	205	69	84	22.0004
eeettttttttttte	chr20:4837261-4837520(-)$1	259	103	118	22.0004
ffftttttttttttf	chr17:79780663-79780966(-)$1	303	165	180	21.1750
dddtttttttttttd	chr16:1750673-1750979(+)$1	306	202	217	21.3473
ccctttttttttttc	chr17:79477222-79477434(-)$1	212	72	87	21.4361
dddtttttttttttd	chr17:48187622-48187914(+)$1	292	220	235	21.3473
eeettttttttttte	chr11:2152568-2152776(-)$1	208	18	33	22.0004
===uuuuuuuuuuuu	chr11:2152330-2152535(-)$1	205	104	119	20.9605
dddwwwwwwwwwwww	chr19:3208335-3208608(+)$1	273	77	92	18.7757
ccctttttttttttc	chr17:20905973-20906249(-)$1	276	138	153	21.4361
"bbuuuuuuuuuuuu	chr11:2153192-2153400(-)$1	208	116	131	20.5641
eeettttttttttte	chr11:2152691-2152895(-)$1	204	137	152	22.0004
eeettttttttttte	chr11:2152582-2152784(-)$1	202	26	41	22.0004
ccctttttttttttc	chr17:79477234-79477456(-)$1	222	94	109	21.4361
bbvvvvvvvvvvvvv	chr10:75009837-75010061(-)$1	224	49	64	20.5705
dddtttttttttttd	chr19:6414422-6414675(-)$1	253	148	163	21.3473
bbvvvvvvvvvvvvv	chr11:2152737-2152941(-)$1	204	118	133	20.5705
===uuuuuuuuuuuu	chr17:7215516-7215762(+)$1	246	89	104	20.9605
eeettttttttttte	chr11:2152639-2152844(-)$1	205	86	101	22.0004
ffuuuuuuuuuuuuf	chr11:770094-770346(-)$1	252	50	65	20.3165
bbuuuuuuuuuuuub	chr11:2153179-2153384(-)$1	205	101	116	20.0915
eeettttttttttte	chr11:2152680-2152890(-)$1	210	132	147	22.0004
eeettttttttttte	chr11:2152648-2152852(-)$1	204	94	109	22.0004
bbvvvvvvvvvvvvv	chr11:2152741-2152948(-)$1	207	125	140	20.5705
eeettttttttttte	chr11:2152619-2152822(-)$1	203	64	79	22.0004
eeettttttttttte	chr11:2152723-2152937(-)$1	214	179	194	22.0004
eeuuuuuuuuuuuue	chr3:10192771-10193021(+)$1	250	95	110	20.9345
ddduuuuuuuuuuuu	chr17:37075452-37075713(+)$1	261	225	240	20.8098
eeettttttttttte	chr11:2152659-2152863(-)$1	204	105	120	22.0004
eeettttttttttte	chr11:2152616-2152819(-)$1	203	61	76	22.0004
eeettttttttttte	chr11:2152629-2152834(-)$1	205	76	91	22.0004
dddtttttttttttd	chr16:69361611-69361858(-)$1	247	117	132	21.3473
"bbuuuuuuuuuuuu	chr11:2153200-2153404(-)$1	204	120	135	20.5641
ggguuuuuuuuuuuu	chr6:7883111-7883374(-)$1	263	216	231	20.8417
bbvvvvvvvvvvvvv	chr1:29652763-29653049(+)$1	286	31	46	20.5705

#otherMatches

#Seq PSSM
UGAUUGAGAAAGAUG	chr17:47126704-47127038(+)$1	334	234	249	20.3848
AUGCGCAGCACAUAC	chr11:2152584-2152792(-)$1	208	34	49	22.0004
UAAAAAUGAAGGAAU	chr12:57606421-57606658(+)$1	237	29	44	20.6724
gcacacaugaacaca	chr11:2152718-2152923(-)$1	205	100	115	20.5705
GAAGAAAAAUAAAAU	chr17:47126921-47127158(+)$1	237	197	212	22.0004
AUGCGCAGCACAUAC	chr11:2152698-2152906(-)$1	208	148	163	22.0004
ucaaauacaucaaaa	chr8:30535682-30535953(-)$1	271	228	243	20.2230
UGGGUCUGAACUCAC	chr12:133298478-133298764(+)$1	286	88	103	22.0004
AUGCGCAGCACAUAC	chr11:2152663-2152870(-)$1	207	112	127	22.0004
AUGCGCAGCACAUAC	chr11:2152627-2152829(-)$1	202	71	86	22.0004
gcacacaugaacaca	chr11:2152675-2152880(-)$1	205	57	72	20.5705
gcacacaugaacaca	chr11:2152695-2152898(-)$1	203	75	90	20.5705
CCCUUCCUUCAUCCU	chr17:79780915-79781165(-)$1	250	208	223	20.4390
UGAUUGAGAAAGAUG	chr17:47126843-47127097(+)$1	254	95	110	20.3848
AGCCCACGAGAAACC	chr16:89980035-89980338(+)$1	303	25	40	18.8076
gcacacacacaaacg	chr11:2153184-2153388(-)$1	204	105	120	20.0915
AUGCGCAGCACAUAC	chr11:2152652-2152858(-)$1	206	100	115	22.0004
AUGCGCAGCACAUAC	chr11:2152671-2152875(-)$1	204	117	132	22.0004
gugaaccgagaucau	chr12:51325296-51325560(+)$1	264	139	154	18.8076
CACUCUAUCAACCUG	chr19:11560267-11560492(+)$1	225	56	71	21.4361
aagaucguugccacc	chr19:6414372-6414622(-)$1	250	95	110	21.3473
GUCUAAUUGAAUCUG	chr2:170606080-170606400(+)$1	320	156	171	20.5109
CUUUUAACUAAUAAA	chr5:42800354-42800611(-)$1	257	206	221	18.8076
agcacacacacaaac	chr11:2153188-2153392(-)$1	204	108	123	20.5641
AUGCGCAGCACAUAC	chr11:2152622-2152827(-)$1	205	69	84	22.0004
UAACUCCUUGCCCUU	chr20:4837261-4837520(-)$1	259	103	118	22.0004
UGCCCCUGGCCACUG	chr17:79780663-79780966(-)$1	303	165	180	21.1750
GAAAAGCUCUUUACU	chr16:1750673-1750979(+)$1	306	202	217	21.3473
UGUGCAGGGUAUUAA	chr17:79477222-79477434(-)$1	212	72	87	21.4361
UUGCCUUAUUCCCCC	chr17:48187622-48187914(+)$1	292	220	235	21.3473
AUGCGCAGCACAUAC	chr11:2152568-2152776(-)$1	208	18	33	22.0004
CCCGUAGGGUGGGCG	chr11:2152330-2152535(-)$1	205	104	119	20.9605
GCAAAUCCCCGUUCC	chr19:3208335-3208608(+)$1	273	77	92	18.7757
CUGGGUGGGAGGAGC	chr17:20905973-20906249(-)$1	276	138	153	21.4361
agcacacacacaaac	chr11:2153192-2153400(-)$1	208	116	131	20.5641
AUGCGCAGCACAUAC	chr11:2152691-2152895(-)$1	204	137	152	22.0004
AUGCGCAGCACAUAC	chr11:2152582-2152784(-)$1	202	26	41	22.0004
UGUGCAGGGUAUUAA	chr17:79477234-79477456(-)$1	222	94	109	21.4361
gcaccaccacaccca	chr10:75009837-75010061(-)$1	224	49	64	20.5705
aagaucguugccacc	chr19:6414422-6414675(-)$1	253	148	163	21.3473
gcacacaugaacaca	chr11:2152737-2152941(-)$1	204	118	133	20.5705
CCAAACCCCUUUAGA	chr17:7215516-7215762(+)$1	246	89	104	20.9605
AUGCGCAGCACAUAC	chr11:2152639-2152844(-)$1	205	86	101	22.0004
GCACCCUGUCCUAAG	chr11:770094-770346(-)$1	252	50	65	20.3165
gcacacacacaaacg	chr11:2153179-2153384(-)$1	205	101	116	20.0915
AUGCGCAGCACAUAC	chr11:2152680-2152890(-)$1	210	132	147	22.0004
AUGCGCAGCACAUAC	chr11:2152648-2152852(-)$1	204	94	109	22.0004
gcacacaugaacaca	chr11:2152741-2152948(-)$1	207	125	140	20.5705
AUGCGCAGCACAUAC	chr11:2152619-2152822(-)$1	203	64	79	22.0004
AUGCGCAGCACAUAC	chr11:2152723-2152937(-)$1	214	179	194	22.0004
AUUCAGCAUUUUUUA	chr3:10192771-10193021(+)$1	250	95	110	20.9345
UGCCCACGCAGACCU	chr17:37075452-37075713(+)$1	261	225	240	20.8098
AUGCGCAGCACAUAC	chr11:2152659-2152863(-)$1	204	105	120	22.0004
AUGCGCAGCACAUAC	chr11:2152616-2152819(-)$1	203	61	76	22.0004
AUGCGCAGCACAUAC	chr11:2152629-2152834(-)$1	205	76	91	22.0004
ggucuuacuauguug	chr16:69361611-69361858(-)$1	247	117	132	21.3473
agcacacacacaaac	chr11:2153200-2153404(-)$1	204	120	135	20.5641
CUGUGUAAACAUUUU	chr6:7883111-7883374(-)$1	263	216	231	20.8417
GCUUCCCUGAUAUGU	chr1:29652763-29653049(+)$1	286	31	46	20.5705

#DB
.((............	chr17:47126704-47127038(+)$1	1	234	249	20.3848
(((...........)	chr11:2152584-2152792(-)$1	1	34	49	22.0004
(((...........)	chr12:57606421-57606658(+)$1	1	29	44	20.6724
((.............	chr11:2152718-2152923(-)$1	1	100	115	20.5705
(((...........)	chr17:47126921-47127158(+)$1	1	197	212	22.0004
(((...........)	chr11:2152698-2152906(-)$1	1	148	163	22.0004
(.............)	chr8:30535682-30535953(-)$1	1	228	243	20.2230
(((...........)	chr12:133298478-133298764(+)$1	1	88	103	22.0004
(((...........)	chr11:2152663-2152870(-)$1	1	112	127	22.0004
(((...........)	chr11:2152627-2152829(-)$1	1	71	86	22.0004
((.............	chr11:2152675-2152880(-)$1	1	57	72	20.5705
((.............	chr11:2152695-2152898(-)$1	1	75	90	20.5705
(((............	chr17:79780915-79781165(-)$1	1	208	223	20.4390
.((............	chr17:47126843-47127097(+)$1	1	95	110	20.3848
(((............	chr16:89980035-89980338(+)$1	1	25	40	18.8076
((............)	chr11:2153184-2153388(-)$1	1	105	120	20.0915
(((...........)	chr11:2152652-2152858(-)$1	1	100	115	22.0004
(((...........)	chr11:2152671-2152875(-)$1	1	117	132	22.0004
(((............	chr12:51325296-51325560(+)$1	1	139	154	18.8076
(((...........)	chr19:11560267-11560492(+)$1	1	56	71	21.4361
(((...........)	chr19:6414372-6414622(-)$1	1	95	110	21.3473
((............)	chr2:170606080-170606400(+)$1	1	156	171	20.5109
(((............	chr5:42800354-42800611(-)$1	1	206	221	18.8076
.((............	chr11:2153188-2153392(-)$1	1	108	123	20.5641
(((...........)	chr11:2152622-2152827(-)$1	1	69	84	22.0004
(((...........)	chr20:4837261-4837520(-)$1	1	103	118	22.0004
(((...........)	chr17:79780663-79780966(-)$1	1	165	180	21.1750
(((...........)	chr16:1750673-1750979(+)$1	1	202	217	21.3473
(((...........)	chr17:79477222-79477434(-)$1	1	72	87	21.4361
(((...........)	chr17:48187622-48187914(+)$1	1	220	235	21.3473
(((...........)	chr11:2152568-2152776(-)$1	1	18	33	22.0004
(((............	chr11:2152330-2152535(-)$1	1	104	119	20.9605
(((............	chr19:3208335-3208608(+)$1	1	77	92	18.7757
(((...........)	chr17:20905973-20906249(-)$1	1	138	153	21.4361
.((............	chr11:2153192-2153400(-)$1	1	116	131	20.5641
(((...........)	chr11:2152691-2152895(-)$1	1	137	152	22.0004
(((...........)	chr11:2152582-2152784(-)$1	1	26	41	22.0004
(((...........)	chr17:79477234-79477456(-)$1	1	94	109	21.4361
((.............	chr10:75009837-75010061(-)$1	1	49	64	20.5705
(((...........)	chr19:6414422-6414675(-)$1	1	148	163	21.3473
((.............	chr11:2152737-2152941(-)$1	1	118	133	20.5705
(((............	chr17:7215516-7215762(+)$1	1	89	104	20.9605
(((...........)	chr11:2152639-2152844(-)$1	1	86	101	22.0004
((............)	chr11:770094-770346(-)$1	1	50	65	20.3165
((............)	chr11:2153179-2153384(-)$1	1	101	116	20.0915
(((...........)	chr11:2152680-2152890(-)$1	1	132	147	22.0004
(((...........)	chr11:2152648-2152852(-)$1	1	94	109	22.0004
((.............	chr11:2152741-2152948(-)$1	1	125	140	20.5705
(((...........)	chr11:2152619-2152822(-)$1	1	64	79	22.0004
(((...........)	chr11:2152723-2152937(-)$1	1	179	194	22.0004
((............)	chr3:10192771-10193021(+)$1	1	95	110	20.9345
(((............	chr17:37075452-37075713(+)$1	1	225	240	20.8098
(((...........)	chr11:2152659-2152863(-)$1	1	105	120	22.0004
(((...........)	chr11:2152616-2152819(-)$1	1	61	76	22.0004
(((...........)	chr11:2152629-2152834(-)$1	1	76	91	22.0004
(((...........)	chr16:69361611-69361858(-)$1	1	117	132	21.3473
.((............	chr11:2153200-2153404(-)$1	1	120	135	20.5641
(((............	chr6:7883111-7883374(-)$1	1	216	231	20.8417
((.............	chr1:29652763-29653049(+)$1	1	31	46	20.5705

#PSSM
e : 0.38	b : 0.15	d : 0.11	c : 0.08	g : 0.06	f : 0.05	" : 0.05	[ : 0.03	= : 0.03	h : 0.01	
e : 0.37	b : 0.23	d : 0.11	c : 0.08	g : 0.06	f : 0.05	= : 0.03	h : 0.01	v : 0.01	
e : 0.35	v : 0.13	d : 0.11	b : 0.08	u : 0.08	g : 0.06	c : 0.06	f : 0.03	= : 0.03	h : 0.01	
t : 0.54	u : 0.20	v : 0.18	w : 0.06	
t : 0.54	u : 0.20	v : 0.18	w : 0.06	
t : 0.54	u : 0.20	v : 0.18	w : 0.06	
t : 0.54	u : 0.20	v : 0.18	w : 0.06	
t : 0.54	u : 0.20	v : 0.18	w : 0.06	
t : 0.54	u : 0.20	v : 0.18	w : 0.06	
t : 0.54	u : 0.20	v : 0.18	w : 0.06	
t : 0.54	u : 0.20	v : 0.18	w : 0.06	
t : 0.54	u : 0.20	v : 0.18	w : 0.06	
t : 0.54	u : 0.20	v : 0.18	w : 0.06	
t : 0.54	u : 0.20	v : 0.18	w : 0.06	
e : 0.38	v : 0.16	u : 0.11	c : 0.08	d : 0.08	w : 0.06	b : 0.03	f : 0.03	h : 0.01	

#score	1244.1725698794419
#seq	59
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_transcript_m2_run2.txt

#BEAR
[ddddvvvvvvvvvvvvvdddd]c	chr7:105555034-105555292(+)$1	258	144	168	23.4230
###cccuuuuuuuuuuuuccc444	chr20:34820053-34820322(+)$1	269	15	39	23.1142
fffffftttttttttttffffff:	chr9:104163123-104163372(+)$1	249	102	126	21.6722
ggggggwwwwwwwwwwwwwwgggg	chr2:240209748-240210035(-)$1	287	201	225	21.2743
ggggggtttttttttttggggggg	chr6:24257993-24258239(-)$1	246	13	37	22.9230
:ddddwwwwwwwwwwwwwwdddd:	chr12:63275051-63275346(-)$1	295	245	269	20.1097
fffccctttttttttttccc]fff	chr6:1998325-1998558(-)$1	233	84	108	22.8271
c[ddddtttttttttttdddd]cc	chr7:156485820-156486066(-)$1	246	92	116	23.1267
#ddddauuuuuuuuuuuua]dddd	chr1:179153578-179153839(-)$1	261	157	181	23.0908
eeddddvvvvvvvvvvvvvdddd:	chr20:40214014-40214234(-)$1	220	168	192	22.4719
==[ccctttttttttttccc22==	chr9:104162581-104162818(+)$1	237	137	161	22.7966
eeeeeuuuuuuuuuuuueeeee]a	chr3:138419404-138419649(-)$1	245	36	60	23.1860
eeeebbuuuuuuuuuuuubb]eee	chr6:11541653-11541938(+)$1	285	29	53	22.1337
=====uuuuuuuuuuuu=======	chr12:15925863-15926187(-)$1	324	289	313	22.6836
!eeeeettttttttttteeeee33	chr2:188383719-188383939(+)$1	220	174	198	24.2003
fffffvvvvvvvvvvvvvffffff	chr20:18273283-18273538(+)$1	255	215	239	22.3802
deeeeettttttttttteeeee::	chr6:159032107-159032377(+)$1	270	217	241	22.0348
+eeeeettttttttttteeeee]c	chr6:24255185-24255479(-)$1	294	173	197	23.3887
!eeeeewwwwwwwwwwwwwweeee	chr6:45259643-45259869(-)$1	226	81	105	21.9195
%eeeeettttttttttteeeee99	chr1:162135796-162136042(+)$1	246	21	45	22.2027
!!dddduuuuuuuuuuuudddd22	chr3:171496266-171496551(-)$1	285	123	147	23.1480
!eeeeettttttttttteeeeecc	chr2:139300916-139301234(+)$1	318	149	173	23.9683
!aa!!attttttttttta22a]a2	chr16:23585076-23585338(+)$1	262	169	193	22.5975
$$ddddvvvvvvvvvvvvvdddd4	chr3:42076425-42076686(+)$1	261	92	116	22.8539
::ddddvvvvvvvvvvvvvdddd:	chr13:51141221-51141478(+)$1	257	220	244	20.5678
gggggguuuuuuuuuuuugggggg	chr22:28963582-28963874(-)$1	292	168	192	22.9954
!!ddddtttttttttttdddd22d	chr8:27394748-27394988(+)$1	240	68	92	22.8450
[bbwwwwwwwwwwwwwwbb]ffff	chr5:95525741-95526032(+)$1	291	188	212	19.1935
[bbccctttttttttttccc]bb]	chr12:26756526-26756788(-)$1	262	210	234	22.2044
ee:ccctttttttttttcccccc[	chr16:50607256-50607489(+)$1	233	76	100	21.9510
g[dddduuuuuuuuuuuudddd]g	chr6:24193072-24193339(-)$1	267	123	147	23.3307
ccc[bbtttttttttttbb]cccb	chr6:144655351-144655629(+)$1	278	154	178	21.8660
ggggggtttttttttttggggggg	chr11:35758001-35758260(+)$1	259	50	74	22.9230
fffcccvvvvvvvvvvvvvccc]f	chr13:73405723-73405985(+)$1	262	41	65	22.9807
c[ddddtttttttttttddddccc	chr11:14819907-14820191(+)$1	284	217	241	23.0959
eeeeeuuuuuuuuuuuueeeee]c	chr2:188383537-188383759(+)$1	222	58	82	23.1782
ggddddvvvvvvvvvvvvvdddd3	chr6:47966162-47966440(-)$1	278	217	241	23.2743
:eeeeeuuuuuuuuuuuueeeee:	chr4:2598659-2598964(+)$1	305	277	301	22.1853
eeewwwwwwwwwwwwwweeeee33	chr17:40627050-40627291(+)$1	241	109	133	20.8475
c!!cccuuuuuuuuuuuuccc22c	chr7:122508720-122508970(-)$1	250	60	84	22.8576
iiiiiuuuuuuuuuuuuiiiiiii	chr22:41489612-41489903(+)$1	291	112	136	22.2051
!eeeeevvvvvvvvvvvvveeeee	chrX:132963009-132963343(-)$1	334	195	219	23.7827
ggggggwwwwwwwwwwwwwwgggg	chr11:111512265-111512678(+)$1	413	132	156	21.2743
iiiiiitttttttttttiiiiiii	chr22:41489386-41489701(+)$1	315	237	261	22.6807
dddcccvvvvvvvvvvvvvccc]d	chr16:81533517-81533779(+)$1	262	83	107	22.8669
ccc[bbtttttttttttbb]ccc2	chr6:4801822-4802100(+)$1	278	56	80	21.9078
:eeeeeuuuuuuuuuuuueeeee:	chr9:126591064-126591323(-)$1	259	57	81	22.1853
:eeeeettttttttttteeeee:E	chr7:3540715-3541000(+)$1	285	22	46	21.1994
[cccwwwwwwwwwwwwwwccc]ff	chr3:81743173-81743516(-)$1	343	57	81	21.3127
##ddddtttttttttttdddd666	chr8:90746963-90747227(-)$1	264	17	41	21.8327
"""cccuuuuuuuuuuuuccc]==	chr3:171973681-171973912(+)$1	231	22	46	23.1889
fffffvvvvvvvvvvvvvffffff	chr15:85618128-85618431(+)$1	303	252	276	22.3802
fffffftttttttttttffffff:	chr20:8444905-8445221(+)$1	316	117	141	21.6722
[eeeeettttttttttteeeee]c	chr3:17492588-17492849(-)$1	261	54	78	24.1258
ee[bbuuuuuuuuuuuubb]eeee	chr10:96363082-96363401(+)$1	319	232	256	21.5374
fffffftttttttttttffffff:	chr19:7515252-7515506(+)$1	254	24	48	21.6722
[eeeeewwwwwwwwwwwwwweeee	chr3:185395307-185395536(-)$1	229	171	195	21.9182
iiiiiuuuuuuuuuuuuiiiiiii	chr20:48555279-48555580(+)$1	301	108	132	22.2051
eeeeeuuuuuuuuuuuueeeee]b	chr14:69363152-69363380(-)$1	228	142	166	22.9945
:eeeeettttttttttteeeeecc	chr2:168864800-168865097(-)$1	297	16	40	22.9020
dddd[attttttttttta]dddd:	chrX:24220616-24220890(+)$1	274	142	166	22.4099
fffffvvvvvvvvvvvvvffffff	chr15:85637614-85637928(+)$1	314	178	202	22.3802
[eeeeeuuuuuuuuuuuueeeeed	chr2:236532876-236533133(+)$1	257	57	81	23.7284
ccc!!attttttttttta22ccc]	chr20:30988619-30988850(+)$1	231	90	114	22.7361
[eeeeevvvvvvvvvvvvveeeee	chr18:44671400-44671639(-)$1	239	51	75	23.7814
d[dddduuuuuuuuuuuudddddd	chr2:135046782-135047067(+)$1	285	112	136	22.7487
ggddddvvvvvvvvvvvvvdddd5	chr2:20486894-20487137(-)$1	243	68	92	22.5678
fffffavvvvvvvvvvvvva]fff	chr5:80589265-80589559(-)$1	294	102	126	22.5861

#otherMatches

#Seq PSSM
UGUCUCCUGUUUUAUCCAAGACCG	chr7:105555034-105555292(+)$1	258	144	168	23.4230
CUAGGGCACUGUUUCCUCCCCAUC	chr20:34820053-34820322(+)$1	269	15	39	23.1142
GAUGUUUCCUGUCCCUUGACGUCU	chr9:104163123-104163372(+)$1	249	102	126	21.6722
ucaggauucuucaucucuguucuu	chr2:240209748-240210035(-)$1	287	201	225	21.2743
CUUUAAUCCAGUUaacuuuagagu	chr6:24257993-24258239(-)$1	246	13	37	22.9230
ucugcaaaaucccuucacagcagc	chr12:63275051-63275346(-)$1	295	245	269	20.1097
UGAUGAUUCUUUCUCUUUCAUUCA	chr6:1998325-1998558(-)$1	233	84	108	22.8271
guuuaguuuguucuuuucugauuc	chr7:156485820-156486066(-)$1	246	92	116	23.1267
UCAGUCGGUAACCAAGUAGUACUG	chr1:179153578-179153839(-)$1	261	157	181	23.0908
accagguucaagcaauucuccugc	chr20:40214014-40214234(-)$1	220	168	192	22.4719
ccccauccuuugucucaauguugg	chr9:104162581-104162818(+)$1	237	137	161	22.7966
uagaggcuuuucuucuacucuauc	chr3:138419404-138419649(-)$1	245	36	60	23.1860
gcagcuuucucacaucccagccug	chr6:11541653-11541938(+)$1	285	29	53	22.1337
UAAACCAAAAGGAAAAUGUUUAGU	chr12:15925863-15926187(-)$1	324	289	313	22.6836
uccaguucuguucccuugcuggca	chr2:188383719-188383939(+)$1	220	174	198	24.2003
GACUAGGAUGUUGGGAAAUGGUCU	chr20:18273283-18273538(+)$1	255	215	239	22.3802
GGUCCUUCUCCACAACUGGGACAC	chr6:159032107-159032377(+)$1	270	217	241	22.0348
uuaucauccuuaugucuugauacc	chr6:24255185-24255479(-)$1	294	173	197	23.3887
uaccuggugcuuuuuucucacagg	chr6:45259643-45259869(-)$1	226	81	105	21.9195
UCAGGGUCACCUUUCUUCUCUGUC	chr1:162135796-162136042(+)$1	246	21	45	22.2027
uugcaguuuccguuucuucugccu	chr3:171496266-171496551(-)$1	285	123	147	23.1480
cacugauacccuuucuuucaguug	chr2:139300916-139301234(+)$1	318	149	173	23.9683
UGCCUCUGUUCACACCUGUUGUCU	chr16:23585076-23585338(+)$1	262	169	193	22.5975
CCAAAGUGCCUUCUUUCUCCUUUC	chr3:42076425-42076686(+)$1	261	92	116	22.8539
aucacauuucuguuuacauugugu	chr13:51141221-51141478(+)$1	257	220	244	20.5678
uuucucaagcagcuucccgagaaa	chr22:28963582-28963874(-)$1	292	168	192	22.9954
cuugcaucucacucauuugcauug	chr8:27394748-27394988(+)$1	240	68	92	22.8450
GCUCAUUCAGUAUCUUUAGGUGCC	chr5:95525741-95526032(+)$1	291	188	212	19.1935
UCUUUCUCUCUCUUUCUGAAUAGU	chr12:26756526-26756788(-)$1	262	210	234	22.2044
UCUGGGCUCUUCUUCAUCCCCUUG	chr16:50607256-50607489(+)$1	233	76	100	21.9510
acuauuuucuuuguuccugguguu	chr6:24193072-24193339(-)$1	267	123	147	23.3307
GAAGAGUAACCACCUUCCUGUUCC	chr6:144655351-144655629(+)$1	278	154	178	21.8660
UUUGUGUGUUUGCUUUUUACAAAC	chr11:35758001-35758260(+)$1	259	50	74	22.9230
agacaguuuguuaugauuucuguu	chr13:73405723-73405985(+)$1	262	41	65	22.9807
guaggcuauuaauuacugccucca	chr11:14819907-14820191(+)$1	284	217	241	23.0959
cuugacacuucauuucauuaaguc	chr2:188383537-188383759(+)$1	222	58	82	23.1782
GAGGGUGAGAUGCAUAUGGACCCA	chr6:47966162-47966440(-)$1	278	217	241	23.2743
cugcuguaauucucuuccuagcac	chr4:2598659-2598964(+)$1	305	277	301	22.1853
CCAUCUGCCAUUUCCUUUGGGGCC	chr17:40627050-40627291(+)$1	241	109	133	20.8475
auguucuaucucuucguugaaauu	chr7:122508720-122508970(-)$1	250	60	84	22.8576
ACAUCUCCCAGUUCUUUGGUGUGA	chr22:41489612-41489903(+)$1	291	112	136	22.2051
uuucaaucuauuugugucuuugaa	chrX:132963009-132963343(-)$1	334	195	219	23.7827
GAUUUUCACUUUAUUUCUUAAAAA	chr11:111512265-111512678(+)$1	413	132	156	21.2743
GUGAAGUUUAACAAUUCUUUUAUC	chr22:41489386-41489701(+)$1	315	237	261	22.6807
GAGGAGCCCUUUCUUCCUUCUCUC	chr16:81533517-81533779(+)$1	262	83	107	22.8669
gucugcaaaauuugaaaguuggcu	chr6:4801822-4802100(+)$1	278	56	80	21.9078
CCUGAACUUUUUCUUUAUUUCAGU	chr9:126591064-126591323(-)$1	259	57	81	22.1853
cagacuaaaacauugaaagucuug	chr7:3540715-3541000(+)$1	285	22	46	21.1994
GAAAACAUUUUUGAUUCAUUUGUU	chr3:81743173-81743516(-)$1	343	57	81	21.3127
cccagagauaagucccauuugauc	chr8:90746963-90747227(-)$1	264	17	41	21.8327
AUUUUCUUUGCUCCCUCUGAACCU	chr3:171973681-171973912(+)$1	231	22	46	23.1889
GCUGUAUUUUCAUUCCCCAUGGCC	chr15:85618128-85618431(+)$1	303	252	276	22.3802
ucuguuuuccuuuucucaauagac	chr20:8444905-8445221(+)$1	316	117	141	21.6722
uaguguugauggucuuuacauuuu	chr3:17492588-17492849(-)$1	261	54	78	24.1258
ggugacucaaauuuauaucuccag	chr10:96363082-96363401(+)$1	319	232	256	21.5374
AUCUUGCUGUCCGUUUCCAAGAUG	chr19:7515252-7515506(+)$1	254	24	48	21.6722
ucaugcuucucuguuucuuuguau	chr3:185395307-185395536(-)$1	229	171	195	21.9182
UUGGUUCCAUUAUACUCACUGGAC	chr20:48555279-48555580(+)$1	301	108	132	22.2051
UAGCUGUGAGAGGAAAAAGCUAGA	chr14:69363152-69363380(-)$1	228	142	166	22.9945
uugaauuccagacuuauauucagc	chr2:168864800-168865097(-)$1	297	16	40	22.9020
UGCCCCUCCCUUCAACUGUGGCAU	chrX:24220616-24220890(+)$1	274	142	166	22.4099
GUUUUCUCUCAUCUCCCAAAAACC	chr15:85637614-85637928(+)$1	314	178	202	22.3802
UGGAAGUCCCCUUGCCCCCUUCUC	chr2:236532876-236533133(+)$1	257	57	81	23.7284
aguuucauguuuuguuaguuauuu	chr20:30988619-30988850(+)$1	231	90	114	22.7361
ugcauugaaucugagucuaaaugu	chr18:44671400-44671639(-)$1	239	51	75	23.7814
GUGCCGAUCUCUCUUCUGUGGCCC	chr2:135046782-135047067(+)$1	285	112	136	22.7487
AUUACUUGCAUCUUCUUUUAGUAC	chr2:20486894-20487137(-)$1	243	68	92	22.5678
uuggucucugucucuuuuuguacc	chr5:80589265-80589559(-)$1	294	102	126	22.5861

#DB
.((((.............)))).)	chr7:105555034-105555292(+)$1	1	144	168	23.4230
...(((............)))...	chr20:34820053-34820322(+)$1	1	15	39	23.1142
((((((...........)))))).	chr9:104163123-104163372(+)$1	1	102	126	21.6722
((((((..............))))	chr2:240209748-240210035(-)$1	1	201	225	21.2743
((((((...........)))))))	chr6:24257993-24258239(-)$1	1	13	37	22.9230
.((((..............)))).	chr12:63275051-63275346(-)$1	1	245	269	20.1097
((((((...........))).)))	chr6:1998325-1998558(-)$1	1	84	108	22.8271
(.((((...........)))).))	chr7:156485820-156486066(-)$1	1	92	116	23.1267
.(((((............).))))	chr1:179153578-179153839(-)$1	1	157	181	23.0908
))((((.............)))).	chr20:40214014-40214234(-)$1	1	168	192	22.4719
((.(((...........)))..))	chr9:104162581-104162818(+)$1	1	137	161	22.7966
(((((............))))).)	chr3:138419404-138419649(-)$1	1	36	60	23.1860
((((((............)).)))	chr6:11541653-11541938(+)$1	1	29	53	22.1337
(((((............)))))))	chr12:15925863-15926187(-)$1	1	289	313	22.6836
.(((((...........)))))..	chr2:188383719-188383939(+)$1	1	174	198	24.2003
(((((.............))))))	chr20:18273283-18273538(+)$1	1	215	239	22.3802
)(((((...........)))))..	chr6:159032107-159032377(+)$1	1	217	241	22.0348
.(((((...........))))).)	chr6:24255185-24255479(-)$1	1	173	197	23.3887
.(((((..............))))	chr6:45259643-45259869(-)$1	1	81	105	21.9195
.(((((...........)))))..	chr1:162135796-162136042(+)$1	1	21	45	22.2027
..((((............))))..	chr3:171496266-171496551(-)$1	1	123	147	23.1480
.(((((...........)))))))	chr2:139300916-139301234(+)$1	1	149	173	23.9683
.((..(...........)..).).	chr16:23585076-23585338(+)$1	1	169	193	22.5975
..((((.............)))).	chr3:42076425-42076686(+)$1	1	92	116	22.8539
..((((.............)))).	chr13:51141221-51141478(+)$1	1	220	244	20.5678
((((((............))))))	chr22:28963582-28963874(-)$1	1	168	192	22.9954
..((((...........))))..)	chr8:27394748-27394988(+)$1	1	68	92	22.8450
.((..............)).))))	chr5:95525741-95526032(+)$1	1	188	212	19.1935
.(((((...........))).)).	chr12:26756526-26756788(-)$1	1	210	234	22.2044
)).(((...........)))(((.	chr16:50607256-50607489(+)$1	1	76	100	21.9510
(.((((............)))).)	chr6:24193072-24193339(-)$1	1	123	147	23.3307
(((.((...........)).))))	chr6:144655351-144655629(+)$1	1	154	178	21.8660
((((((...........)))))))	chr11:35758001-35758260(+)$1	1	50	74	22.9230
((((((.............))).)	chr13:73405723-73405985(+)$1	1	41	65	22.9807
(.((((...........)))))))	chr11:14819907-14820191(+)$1	1	217	241	23.0959
(((((............))))).)	chr2:188383537-188383759(+)$1	1	58	82	23.1782
((((((.............)))).	chr6:47966162-47966440(-)$1	1	217	241	23.2743
.(((((............))))).	chr4:2598659-2598964(+)$1	1	277	301	22.1853
(((..............)))))..	chr17:40627050-40627291(+)$1	1	109	133	20.8475
(..(((............)))..)	chr7:122508720-122508970(-)$1	1	60	84	22.8576
(((((............)))))))	chr22:41489612-41489903(+)$1	1	112	136	22.2051
.(((((.............)))))	chrX:132963009-132963343(-)$1	1	195	219	23.7827
((((((..............))))	chr11:111512265-111512678(+)$1	1	132	156	21.2743
((((((...........)))))))	chr22:41489386-41489701(+)$1	1	237	261	22.6807
((((((.............))).)	chr16:81533517-81533779(+)$1	1	83	107	22.8669
(((.((...........)).))).	chr6:4801822-4802100(+)$1	1	56	80	21.9078
.(((((............))))).	chr9:126591064-126591323(-)$1	1	57	81	22.1853
.(((((...........))))).(	chr7:3540715-3541000(+)$1	1	22	46	21.1994
.(((..............))).))	chr3:81743173-81743516(-)$1	1	57	81	21.3127
..((((...........))))...	chr8:90746963-90747227(-)$1	1	17	41	21.8327
...(((............))).))	chr3:171973681-171973912(+)$1	1	22	46	23.1889
(((((.............))))))	chr15:85618128-85618431(+)$1	1	252	276	22.3802
((((((...........)))))).	chr20:8444905-8445221(+)$1	1	117	141	21.6722
.(((((...........))))).)	chr3:17492588-17492849(-)$1	1	54	78	24.1258
((.((............)).))))	chr10:96363082-96363401(+)$1	1	232	256	21.5374
((((((...........)))))).	chr19:7515252-7515506(+)$1	1	24	48	21.6722
.(((((..............))))	chr3:185395307-185395536(-)$1	1	171	195	21.9182
(((((............)))))))	chr20:48555279-48555580(+)$1	1	108	132	22.2051
(((((............))))).)	chr14:69363152-69363380(-)$1	1	142	166	22.9945
.(((((...........)))))((	chr2:168864800-168865097(-)$1	1	16	40	22.9020
((((.(...........).)))).	chrX:24220616-24220890(+)$1	1	142	166	22.4099
(((((.............))))))	chr15:85637614-85637928(+)$1	1	178	202	22.3802
.(((((............))))))	chr2:236532876-236533133(+)$1	1	57	81	23.7284
(((..(...........)..))).	chr20:30988619-30988850(+)$1	1	90	114	22.7361
.(((((.............)))))	chr18:44671400-44671639(-)$1	1	51	75	23.7814
(.((((............))))))	chr2:135046782-135047067(+)$1	1	112	136	22.7487
((((((.............)))).	chr2:20486894-20487137(-)$1	1	68	92	22.5678
((((((.............).)))	chr5:80589265-80589559(-)$1	1	102	126	22.5861

#PSSM
f : 0.13	[ : 0.11	g : 0.11	e : 0.11	! : 0.10	: : 0.08	c : 0.08	d : 0.05	# : 0.04	i : 0.04	= : 0.02	+ : 0.01	% : 0.01	$ : 0.01	" : 0.01	
e : 0.33	f : 0.13	g : 0.10	d : 0.07	[ : 0.05	c : 0.05	! : 0.04	i : 0.04	# : 0.02	= : 0.02	b : 0.02	a : 0.01	$ : 0.01	: : 0.01	" : 0.01	
e : 0.29	d : 0.25	f : 0.13	g : 0.07	c : 0.05	i : 0.04	[ : 0.02	b : 0.02	# : 0.01	= : 0.01	a : 0.01	: : 0.01	! : 0.01	" : 0.01	
e : 0.27	d : 0.23	c : 0.14	f : 0.10	g : 0.07	i : 0.04	! : 0.02	w : 0.02	[ : 0.02	= : 0.01	b : 0.01	
e : 0.26	d : 0.22	c : 0.13	f : 0.10	g : 0.07	b : 0.05	w : 0.04	i : 0.04	! : 0.02	= : 0.01	[ : 0.01	
e : 0.22	d : 0.17	c : 0.13	u : 0.10	g : 0.07	a : 0.07	v : 0.05	w : 0.05	f : 0.04	b : 0.04	i : 0.01	
t : 0.39	u : 0.27	v : 0.20	w : 0.11	
t : 0.39	u : 0.27	v : 0.20	w : 0.11	
t : 0.39	u : 0.27	v : 0.20	w : 0.11	
t : 0.39	u : 0.27	v : 0.20	w : 0.11	
t : 0.39	u : 0.27	v : 0.20	w : 0.11	
t : 0.39	u : 0.27	v : 0.20	w : 0.11	
t : 0.39	u : 0.27	v : 0.20	w : 0.11	
t : 0.39	u : 0.27	v : 0.20	w : 0.11	
t : 0.39	u : 0.27	v : 0.20	w : 0.11	
t : 0.39	u : 0.27	v : 0.20	w : 0.11	
t : 0.39	u : 0.27	v : 0.20	w : 0.11	
v : 0.20	u : 0.17	e : 0.17	w : 0.08	c : 0.05	d : 0.05	b : 0.05	f : 0.04	a : 0.04	i : 0.04	g : 0.02	= : 0.01	
e : 0.22	v : 0.14	d : 0.11	c : 0.11	f : 0.08	w : 0.07	b : 0.07	g : 0.04	i : 0.04	2 : 0.02	a : 0.01	= : 0.01	] : 0.01	
e : 0.25	d : 0.22	c : 0.14	f : 0.08	] : 0.07	w : 0.05	g : 0.04	i : 0.04	2 : 0.02	b : 0.01	= : 0.01	a : 0.01	
e : 0.29	d : 0.23	c : 0.14	f : 0.10	g : 0.07	] : 0.05	i : 0.04	2 : 0.01	= : 0.01	a : 0.01	
e : 0.30	d : 0.17	f : 0.13	c : 0.10	g : 0.07	] : 0.05	2 : 0.04	i : 0.04	4 : 0.01	= : 0.01	b : 0.01	6 : 0.01	
f : 0.14	] : 0.13	d : 0.13	e : 0.13	c : 0.11	g : 0.07	= : 0.04	2 : 0.04	i : 0.04	3 : 0.02	: : 0.02	4 : 0.01	9 : 0.01	a : 0.01	b : 0.01	6 : 0.01	
: : 0.14	c : 0.13	f : 0.11	g : 0.08	e : 0.08	d : 0.07	= : 0.04	3 : 0.04	2 : 0.04	i : 0.04	4 : 0.02	] : 0.02	b : 0.02	a : 0.01	9 : 0.01	[ : 0.01	E : 0.01	6 : 0.01	5 : 0.01	

#score	1528.6094639481823
#seq	68
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_CDS_m3_run1.txt

#BEAR
dd55555aeeeee]bb]dddd	chr17:26677693-26677919(-)$1	226	144	165	10.7487
d666666cccdddd]ccc777	chr20:62597552-62597775(-)$1	223	102	123	9.0062
dd55555eeeeegggggggbb	chr11:75111730-75111939(+)$1	209	115	136	11.9167
e666666bb]ccc]ffffff2	chr12:120600659-120600877(-)$1	218	78	99	10.0078
dd55555dddd]eeeeedddd	chr9:95032065-95032304(-)$1	239	177	198	9.7750
bb55555eeeee333eeeeeb	chr4:140265329-140265568(+)$1	239	116	137	13.0044
dd55555eeeeegggggggbb	chr11:75111706-75111930(+)$1	224	139	160	11.9167
bb666666dddd]dddd333c	chr11:77780878-77781164(-)$1	286	219	240	10.4170
bb55555ffffff4444bb22	chr17:34171619-34171882(+)$1	263	174	195	8.8360
d666666eeeee333ddddee	chr9:80923376-80923595(+)$1	219	166	187	13.2816
ccc4444eeeee]dddd]eee	chr6:31832515-31832770(-)$1	255	75	96	8.8059
e666666bb]ccc]ffffffF	chr12:120600628-120600859(-)$1	231	60	81	9.6660
>>>>>>>eeeee22eeeee::	chr22:38864146-38864387(+)$1	241	76	97	9.8163
88888888ccc333hhhhhhh	chr1:109778576-109778790(+)$1	214	128	149	10.3952
e>>>>>>>>>>>>>ggggggg	chr21:33755670-33755927(-)$1	257	146	167	8.5792
ddd4444eeeee22dddd333	chr12:112681168-112681377(-)$1	209	137	158	10.0650
dd55555eeeeegggggggbb	chr11:75111703-75111906(+)$1	203	142	163	11.9167
ff7777777ggggggg]eeee	chr4:84393290-84393535(-)$1	245	178	199	9.6543
b666666eeeeedddd]eeee	chr4:152024072-152024284(+)$1	212	153	174	11.8729
dd55555ccc]a22eeeeebb	chr12:120600773-120601011(-)$1	238	81	102	11.3463
>>>>>>>>>ccc22ffffffd	chr6:35438378-35438582(+)$1	204	103	124	9.3938
h666666eeeee22eeeee33	chrX:118603816-118604052(+)$1	236	81	102	13.6132
b666666eeeeedddd]eeee	chr4:152024046-152024272(+)$1	226	179	200	11.8729
ddd4444eeeee333hhhhhh	chr9:19378810-19379016(-)$1	206	80	101	9.5124
gg666666ccc333ccc]fff	chr17:40646249-40646468(+)$1	219	101	122	11.2642
dd55555eeeeegggggggbb	chr11:75111739-75111951(+)$1	212	106	127	11.9167
f7777777dddd22dddd22b	chr11:9595872-9596109(+)$1	237	130	151	11.3825
cc55555eeeeedddd"""bb	chr4:152024028-152024246(+)$1	218	111	132	10.3165
ddd4444eeeee333hhhhhh	chr9:19378803-19379010(-)$1	207	74	95	9.5124
ddd4444eeeee=========	chr12:112681130-112681368(-)$1	238	128	149	9.2435
ff4444a22dddd]ggggggg	chr1:38464955-38465202(-)$1	247	38	59	7.8429
bb55555eeeee333eeeeeb	chr4:140265321-140265529(+)$1	208	124	145	13.0044
ff55555eeeee22ggggggg	chr6:35438382-35438605(+)$1	223	86	107	12.9196
h666666eeeee22eeeee33	chrX:118603801-118604016(+)$1	215	96	117	13.6132
h666666eeeee22eeeee33	chrX:118603782-118604001(+)$1	219	115	136	13.6132
]bb4444eeeee333ffffff	chr17:4880247-4880504(-)$1	257	174	195	9.3973
ff7777777dddd]dddd333	chr5:149199896-149200204(+)$1	308	153	174	10.0125
g666666ccc4444ccc22dd	chr3:127872417-127872700(+)$1	283	128	149	10.7609
88888888ccc333hhhhhhh	chr1:109778590-109778828(+)$1	238	114	135	10.3952

#otherMatches

#Seq PSSM
GGGAGAAGGGGAGCUUGUGGG	chr17:26677693-26677919(-)$1	226	144	165	10.7487
GAAACCCGUGCCGGUCACCAA	chr20:62597552-62597775(-)$1	223	102	123	9.0062
GAAAUCAUUAUCUUAGCCACC	chr11:75111730-75111939(+)$1	209	115	136	11.9167
UCAAAGAGCUCCCUUCCCCUU	chr12:120600659-120600877(-)$1	218	78	99	10.0078
AUGUGGUUAGUAAGUAUGGUU	chr9:95032065-95032304(-)$1	239	177	198	9.7750
CCUAUGAAAAGCAGAUUUGUG	chr4:140265329-140265568(+)$1	239	116	137	13.0044
GAAAUCAUUAUCUUAGCCACC	chr11:75111706-75111930(+)$1	224	139	160	11.9167
GCUAAUCUGUAUGUUGACACC	chr11:77780878-77781164(-)$1	286	219	240	10.4170
ccgaggaggcuauggaggaga	chr17:34171619-34171882(+)$1	263	174	195	8.8360
CUAUUUUUCAUCAAAGCGGAG	chr9:80923376-80923595(+)$1	219	166	187	13.2816
UUCCACAGGGGUCCUGUCCUU	chr6:31832515-31832770(-)$1	255	75	96	8.8059
UCAAAGAGCUCCCUUCCCCUU	chr12:120600628-120600859(-)$1	231	60	81	9.6660
ACUGACUGGCUGGACCAUGAA	chr22:38864146-38864387(+)$1	241	76	97	9.8163
ACCACAUUGUGAAUAUUGUCU	chr1:109778576-109778790(+)$1	214	128	149	10.3952
GAUUUGAAUAAAAAGACCCUG	chr21:33755670-33755927(-)$1	257	146	167	8.5792
GGAAUUGCUGACAGCUGCCGU	chr12:112681168-112681377(-)$1	209	137	158	10.0650
GAAAUCAUUAUCUUAGCCACC	chr11:75111703-75111906(+)$1	203	142	163	11.9167
UUCCCUUUUUUUGGUAUUAUU	chr4:84393290-84393535(-)$1	245	178	199	9.6543
UAAAUUGUAAGUGUUUCUUUG	chr4:152024072-152024284(+)$1	212	153	174	11.8729
CCGACACUGAACAACUGGCCC	chr12:120600773-120601011(-)$1	238	81	102	11.3463
CUUAUAUAUCAAGAGCACCAU	chr6:35438378-35438582(+)$1	204	103	124	9.3938
GUUUUGUGUACCCUCUUGAUU	chrX:118603816-118604052(+)$1	236	81	102	13.6132
UAAAUUGUAAGUGUUUCUUUG	chr4:152024046-152024272(+)$1	226	179	200	11.8729
UUCAUUGUAUGCUCUUGCAGG	chr9:19378810-19379016(-)$1	206	80	101	9.5124
GCUCCGUAUACUAUUAUCACG	chr17:40646249-40646468(+)$1	219	101	122	11.2642
GAAAUCAUUAUCUUAGCCACC	chr11:75111739-75111951(+)$1	212	106	127	11.9167
CCACACAAGACCUUCCGCAAG	chr11:9595872-9596109(+)$1	237	130	151	11.3825
CACCAACAGGUCCGCCAAAUC	chr4:152024028-152024246(+)$1	218	111	132	10.3165
UUCAUUGUAUGCUCUUGCAGG	chr9:19378803-19379010(-)$1	207	74	95	9.5124
GGAAUUGCUGACAGCUGCCGU	chr12:112681130-112681368(-)$1	238	128	149	9.2435
GCCAGGAGCCAAGCCACAGCC	chr1:38464955-38465202(-)$1	247	38	59	7.8429
CCUAUGAAAAGCAGAUUUGUG	chr4:140265321-140265529(+)$1	208	124	145	13.0044
AGAAUGUCCGGGCCUUAUAUA	chr6:35438382-35438605(+)$1	223	86	107	12.9196
GUUUUGUGUACCCUCUUGAUU	chrX:118603801-118604016(+)$1	215	96	117	13.6132
GUUUUGUGUACCCUCUUGAUU	chrX:118603782-118604001(+)$1	219	115	136	13.6132
CCAAGUAUCCAGCCCACAGCC	chr17:4880247-4880504(-)$1	257	174	195	9.3973
UCCCAGCUGGAUGCCAGCGAC	chr5:149199896-149200204(+)$1	308	153	174	10.0125
UCGUCUUUGCCCGAGUUCCAG	chr3:127872417-127872700(+)$1	283	128	149	10.7609
ACCACAUUGUGAAUAUUGUCU	chr1:109778590-109778828(+)$1	238	114	135	10.3952

#DB
)).....)))))).)).))))	chr17:26677693-26677919(-)$1	1	144	165	10.7487
)......))))))).)))...	chr20:62597552-62597775(-)$1	1	102	123	9.0062
)).....))))))))))))))	chr11:75111730-75111939(+)$1	1	115	136	11.9167
)......)).))).)))))).	chr12:120600659-120600877(-)$1	1	78	99	10.0078
)).....)))).)))))))))	chr9:95032065-95032304(-)$1	1	177	198	9.7750
)).....)))))...))))))	chr4:140265329-140265568(+)$1	1	116	137	13.0044
)).....))))))))))))))	chr11:75111706-75111930(+)$1	1	139	160	11.9167
))......)))).))))...)	chr11:77780878-77781164(-)$1	1	219	240	10.4170
)).....))))))....))..	chr17:34171619-34171882(+)$1	1	174	195	8.8360
)......)))))...))))((	chr9:80923376-80923595(+)$1	1	166	187	13.2816
)))....))))).)))).)))	chr6:31832515-31832770(-)$1	1	75	96	8.8059
)......)).))).))))))(	chr12:120600628-120600859(-)$1	1	60	81	9.6660
.......)))))..)))))..	chr22:38864146-38864387(+)$1	1	76	97	9.8163
........)))...)))))))	chr1:109778576-109778790(+)$1	1	128	149	10.3952
).............)))))))	chr21:33755670-33755927(-)$1	1	146	167	8.5792
)))....)))))..))))...	chr12:112681168-112681377(-)$1	1	137	158	10.0650
)).....))))))))))))))	chr11:75111703-75111906(+)$1	1	142	163	11.9167
)).......))))))).))))	chr4:84393290-84393535(-)$1	1	178	199	9.6543
)......))))))))).))))	chr4:152024072-152024284(+)$1	1	153	174	11.8729
)).....))).)..)))))))	chr12:120600773-120601011(-)$1	1	81	102	11.3463
.........)))..))))))(	chr6:35438378-35438582(+)$1	1	103	124	9.3938
)......)))))..)))))..	chrX:118603816-118604052(+)$1	1	81	102	13.6132
)......))))))))).))))	chr4:152024046-152024272(+)$1	1	179	200	11.8729
)))....)))))...))))))	chr9:19378810-19379016(-)$1	1	80	101	9.5124
))......)))...))).)))	chr17:40646249-40646468(+)$1	1	101	122	11.2642
)).....))))))))))))))	chr11:75111739-75111951(+)$1	1	106	127	11.9167
).......))))..))))..)	chr11:9595872-9596109(+)$1	1	130	151	11.3825
)).....)))))((((...((	chr4:152024028-152024246(+)$1	1	111	132	10.3165
)))....)))))...))))))	chr9:19378803-19379010(-)$1	1	74	95	9.5124
)))....))))))))))))))	chr12:112681130-112681368(-)$1	1	128	149	9.2435
))....)..)))).)))))))	chr1:38464955-38465202(-)$1	1	38	59	7.8429
)).....)))))...))))))	chr4:140265321-140265529(+)$1	1	124	145	13.0044
)).....)))))..)))))))	chr6:35438382-35438605(+)$1	1	86	107	12.9196
)......)))))..)))))..	chrX:118603801-118604016(+)$1	1	96	117	13.6132
)......)))))..)))))..	chrX:118603782-118604001(+)$1	1	115	136	13.6132
.))....)))))...))))))	chr17:4880247-4880504(-)$1	1	174	195	9.3973
)).......)))).))))...	chr5:149199896-149200204(+)$1	1	153	174	10.0125
)......)))....)))..))	chr3:127872417-127872700(+)$1	1	128	149	10.7609
........)))...)))))))	chr1:109778590-109778828(+)$1	1	114	135	10.3952

#PSSM
d : 0.33	b : 0.15	f : 0.12	e : 0.07	h : 0.07	c : 0.05	> : 0.05	8 : 0.05	g : 0.05	] : 0.02	
d : 0.28	6 : 0.25	b : 0.12	f : 0.10	> : 0.07	c : 0.05	8 : 0.05	g : 0.02	7 : 0.02	
5 : 0.30	6 : 0.30	d : 0.10	> : 0.07	7 : 0.07	8 : 0.05	c : 0.02	4 : 0.02	b : 0.02	
5 : 0.30	6 : 0.30	4 : 0.17	> : 0.07	7 : 0.07	8 : 0.05	
5 : 0.30	6 : 0.30	4 : 0.17	> : 0.07	7 : 0.07	8 : 0.05	
5 : 0.30	6 : 0.30	4 : 0.17	> : 0.07	7 : 0.07	8 : 0.05	
5 : 0.30	6 : 0.30	4 : 0.15	> : 0.07	7 : 0.07	8 : 0.05	a : 0.02	
e : 0.53	c : 0.07	7 : 0.07	b : 0.05	6 : 0.05	8 : 0.05	> : 0.05	a : 0.02	d : 0.02	f : 0.02	2 : 0.02	
e : 0.56	c : 0.15	d : 0.07	b : 0.05	> : 0.05	7 : 0.05	f : 0.02	2 : 0.02	
e : 0.56	c : 0.17	d : 0.12	] : 0.05	f : 0.02	> : 0.02	g : 0.02	
e : 0.56	d : 0.15	c : 0.15	f : 0.02	> : 0.02	g : 0.02	] : 0.02	4 : 0.02	
e : 0.56	d : 0.12	c : 0.07	3 : 0.07	] : 0.02	f : 0.02	> : 0.02	g : 0.02	a : 0.02	4 : 0.02	
3 : 0.23	2 : 0.23	d : 0.15	g : 0.12	e : 0.05	c : 0.05	] : 0.05	f : 0.02	> : 0.02	= : 0.02	4 : 0.02	
3 : 0.23	2 : 0.23	d : 0.15	] : 0.12	g : 0.12	4 : 0.05	e : 0.02	> : 0.02	= : 0.02	
g : 0.20	d : 0.20	e : 0.15	3 : 0.15	f : 0.07	h : 0.05	c : 0.05	b : 0.02	] : 0.02	4 : 0.02	= : 0.02	
d : 0.23	g : 0.20	e : 0.20	f : 0.10	h : 0.10	c : 0.07	b : 0.02	4 : 0.02	= : 0.02	
e : 0.20	g : 0.17	d : 0.15	] : 0.10	f : 0.10	h : 0.10	c : 0.07	4 : 0.02	" : 0.02	= : 0.02	
e : 0.25	g : 0.17	d : 0.15	f : 0.10	h : 0.10	] : 0.05	c : 0.02	3 : 0.02	b : 0.02	" : 0.02	= : 0.02	2 : 0.02	
e : 0.28	g : 0.17	f : 0.12	h : 0.10	d : 0.07	3 : 0.07	2 : 0.05	7 : 0.02	b : 0.02	" : 0.02	= : 0.02	
e : 0.17	b : 0.15	3 : 0.15	f : 0.12	h : 0.10	d : 0.07	g : 0.07	2 : 0.05	7 : 0.02	: : 0.02	= : 0.02	
b : 0.23	e : 0.12	3 : 0.12	d : 0.10	h : 0.10	g : 0.07	2 : 0.05	f : 0.05	7 : 0.02	c : 0.02	F : 0.02	: : 0.02	= : 0.02	

#score	420.61722183326657
#seq	39
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_transcript_m1_run2.txt

#BEAR
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^f	chr22:48129572-48129875(+)$1	303	105	137	38.0891
[bb[eeeee^^^^^^^^^^^^^^^^^^eeeee	chr2:44169531-44169820(-)$1	289	185	217	32.0056
e!!dddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:16496716-16497042(+)$1	326	34	66	38.2885
=======^^^^^^^^^^^^^^^^^^^^=====	chr21:23689813-23690066(+)$1	253	93	125	36.0251
hh^^^^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr17:45243467-45243733(-)$1	266	18	50	32.9893
hhhhhhhh^^^^^^^^^^^^^^^^^^^hhhhh	chr3:6600377-6600647(+)$1	270	189	221	30.0893
=======^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:119375002-119375221(-)$1	219	106	138	39.0132
[ffffff^^^^^^^^^^^^^^^^^^^^^^fff	chr2:178087689-178087945(+)$1	256	145	177	36.8573
:eeeee^^^^^^^^^^^^^^^^^^^^^eeeee	chr7:119397192-119397421(-)$1	229	35	67	34.3439
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:138021400-138021678(-)$1	278	106	138	38.6183
eee!!bb^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:6616439-6616707(+)$1	268	60	92	38.2964
dd"""bb^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:47124605-47124912(+)$1	307	71	103	38.0862
""eeeee^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:69642999-69643321(+)$1	322	112	144	38.4715
ee[bb[a^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:49586278-49586589(+)$1	311	137	169	38.1978
##eeeee^^^^^^^^^^^^^^^^^^^^^^eee	chr7:119421085-119421306(-)$1	221	111	143	36.9374
=======^^^^^^^^^^^^^^^^^^=======	chr8:56802789-56803152(+)$1	363	291	323	33.0554
ffffff^^^^^^^^^^^^^^^^^^^^^^^^ff	chr18:1290361-1290644(-)$1	283	54	86	37.4750
[ffffff^^^^^^^^^^^^^^^^^^^^^^^^^	chr21:23600495-23600770(+)$1	275	171	203	38.4998
gg!!ccc^^^^^^^^^^^^^^^^^^^^ccc22	chr8:130424952-130425200(-)$1	248	142	174	35.7654
iiii[bb^^^^^^^^^^^^^^^^^^^^^^^^b	chr4:79795451-79795708(+)$1	257	45	77	38.0750
fffbb^^^^^^^^^^^^^^^^^^^^^^^^bb]	chr15:50895845-50896130(-)$1	285	59	91	36.3630
iiiiiii^^^^^^^^^^^^^^^^^^^^^^^^i	chr21:22561516-22561786(+)$1	270	164	196	38.5070
eee[ccc^^^^^^^^^^^^^^^^^^^^^^ccc	chr6:49589362-49589637(-)$1	275	183	215	37.2974
!ffffff^^^^^^^^^^^^^^^^^^^^^^^^f	chr11:68374272-68374607(+)$1	335	97	129	38.1274
=======^^^^^^^^^^^^^^^^^^^======	chr17:2552831-2553214(+)$1	383	224	256	34.5766
f"""ccc^^^^^^^^^^^^^^^^^^ccc4444	chr7:129834730-129834996(-)$1	266	20	52	33.8001
hhhhhhh^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:119490118-119490362(-)$1	244	174	206	37.2551
g!!ffffff^^^^^^^^^^^^^^^^^^fffff	chr3:6554511-6554775(+)$1	264	72	104	31.9303
$$$eeeee^^^^^^^^^^^^^^^^^^^eeeee	chr8:91263979-91264234(+)$1	255	93	125	33.2349
ddd^^^^^^^^^^^^^^^^^^^^^^^^ddddg	chr7:119536115-119536345(-)$1	230	171	203	34.5164
fffffccc^^^^^^^^^^^^^^^^^^^ccc]f	chr17:20783782-20784028(+)$1	246	201	233	34.0891
fff!!bb^^^^^^^^^^^^^^^^^^^^^^bb2	chr17:34151516-34151860(+)$1	344	146	178	36.4704
=======^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:66420998-66421301(+)$1	303	46	78	39.0132
dddd[bb^^^^^^^^^^^^^^^^^^^^^^^^^	chr9:136139984-136140247(-)$1	263	53	85	37.8430
ggggggg^^^^^^^^^^^^^^^^^^^^ggggg	chr3:37303374-37303652(+)$1	278	161	193	35.4048
::eeeee^^^^^^^^^^^^^^^^^^^^eeeee	chr5:53629381-53629676(+)$1	295	32	64	33.2978
ccc[ccc^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:21326513-21326817(+)$1	304	158	190	38.8390
hhhhhhh^^^^^^^^^^^^^^^^^^^^^hhhh	chr7:16307257-16307509(+)$1	252	111	143	33.5212
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:119381384-119381673(-)$1	289	160	192	38.4630
i[adddd^^^^^^^^^^^^^^^^^^^^^dddd	chr8:91318341-91318602(+)$1	261	63	95	35.6200
cc[dddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:119375391-119375678(-)$1	287	198	230	38.3389
dddd^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr1:93663006-93663309(+)$1	303	112	144	35.4176
hhhhhhhh^^^^^^^^^^^^^^^^^^^hhhhh	chr21:47863471-47863765(+)$1	294	98	130	30.0893
iiiiiii^^^^^^^^^^^^^^^^^^^^^^^^i	chr22:19358757-19359012(-)$1	255	81	113	38.5070
!ffffff^^^^^^^^^^^^^^^^^^^^^^^^f	chr5:12751364-12751658(+)$1	294	102	134	38.1274
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr15:89841637-89841893(+)$1	256	162	194	34.8445
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr5:27479449-27479724(+)$1	275	205	237	38.1206
gg[dddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:31395602-31395942(-)$1	340	261	293	38.3985
hh[dddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:76206246-76206562(+)$1	316	44	76	38.0025
::::ccc^^^^^^^^^^^^^^^^^^^^^^ccc	chr15:58313215-58313494(-)$1	279	198	230	33.4802
cceeeee^^^^^^^^^^^^^^^^^^^^^^^^^	chr18:13033074-13033371(+)$1	297	157	189	38.4767
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr7:120637936-120638215(+)$1	279	103	135	34.8445
f[ffffff^^^^^^^^^^^^^^^^^^^fffff	chr3:31661989-31662297(+)$1	308	223	255	33.3209
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr22:19359612-19359885(-)$1	273	0	32	37.3239
!ffffff^^^^^^^^^^^^^^^^^^^^^ffff	chr18:695383-695638(-)$1	255	114	146	35.9354
::eeeee^^^^^^^^^^^^^^^^^^^eeeee:	chr3:142249830-142250185(-)$1	355	207	239	30.9086
::::ccc^^^^^^^^^^^^^^^^^^^^^^ccc	chr19:10915267-10915549(+)$1	282	129	161	33.4802
ggggggg^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:65994170-65994431(+)$1	261	53	85	38.7909

#otherMatches

#Seq PSSM
CUUUGAUAAUAAAACACAACAUAAACAAAAUU	chr22:48129572-48129875(+)$1	303	105	137	38.0891
AGAUGACUGGUCAAAUCUUAACCUCUACAGUC	chr2:44169531-44169820(-)$1	289	185	217	32.0056
UUGAUUUUUAAUCUACAAUUAUGUCuaauaac	chr10:16496716-16497042(+)$1	326	34	66	38.2885
UUUUUAUCUACAACCAAAUAAACUUAAAUAGA	chr21:23689813-23690066(+)$1	253	93	125	36.0251
uaauaagccacacuaccaaaacucaccuaaga	chr17:45243467-45243733(-)$1	266	18	50	32.9893
uguagacuaaggguacaguauuuauaaagucu	chr3:6600377-6600647(+)$1	270	189	221	30.0893
ACAGAUUGAGAAAAUAAAAUAGAAACUAUGAU	chr7:119375002-119375221(-)$1	219	106	138	39.0132
AGUUUCUAAAUUAUCAAUUCCCUACAUGAAGA	chr2:178087689-178087945(+)$1	256	145	177	36.8573
UGCUCUGAAAACUAAAUAACUUUAUAAAGAGC	chr7:119397192-119397421(-)$1	229	35	67	34.3439
CUCUAACAUAUGAAAAUUAAAUUUAAAAAGCU	chrX:138021400-138021678(-)$1	278	106	138	38.6183
ucccucauaaaaacauuaaaacaaaacaaaac	chr3:6616439-6616707(+)$1	268	60	92	38.2964
UACAUCUCAACuauauauauauauaaaauaac	chr17:47124605-47124912(+)$1	307	71	103	38.0862
CUGGCUCUCCUUUAAAUAGCAAAACAGUAGCC	chr12:69642999-69643321(+)$1	322	112	144	38.4715
aguuagcaaccagccaaaaguuaaauaauaaa	chr15:49586278-49586589(+)$1	311	137	169	38.1978
UACAUUAAAUAAAAAUAAAAUCACUCUGCUAA	chr7:119421085-119421306(-)$1	221	111	143	36.9374
guaguuccucaaaaaauuagacauagaauugc	chr8:56802789-56803152(+)$1	363	291	323	33.0554
aacuugcacauauaccccaugaaucuaaaaua	chr18:1290361-1290644(-)$1	283	54	86	37.4750
auuuucaaagacaaaaacaaggaaagaacaaa	chr21:23600495-23600770(+)$1	275	171	203	38.4998
acuacaaaaaacaacaaacaauuagccuuggu	chr8:130424952-130425200(-)$1	248	142	174	35.7654
UUUAAACAAAUAAGAUCCACUAAAAUAUAAAG	chr4:79795451-79795708(+)$1	257	45	77	38.0750
GUAGUUUUAUCAAAAUAUGCUUUAAAAAUACA	chr15:50895845-50896130(-)$1	285	59	91	36.3630
CAUUUGCUUCUAGAUAAGAUUUAAAAAUUGUG	chr21:22561516-22561786(+)$1	270	164	196	38.5070
AUGCAUAUCCCCUAAGUUCCUGUCCAAUUUAU	chr6:49589362-49589637(-)$1	275	183	215	37.2974
uaagaaaucaguuuaaaaaaucaguagucuuu	chr11:68374272-68374607(+)$1	335	97	129	38.1274
uuuggaagagaaaaauaaauaaaauauuuuaa	chr17:2552831-2553214(+)$1	383	224	256	34.5766
uaaaguuaauaaagaaaaacaaaugagccaag	chr7:129834730-129834996(-)$1	266	20	52	33.8001
auuucuuaaaaaacaaaacauaaaaacugaua	chr7:119490118-119490362(-)$1	244	174	206	37.2551
AAAAGGGAAAGAUAUUUAAACAAGAAAUUUCC	chr3:6554511-6554775(+)$1	264	72	104	31.9303
UACCCAGUAUUAAUAAAUUUAAAGGCAACUGG	chr8:91263979-91264234(+)$1	255	93	125	33.2349
ccagaaaauuaaaaaUUAAAAGCUAAAUGGaa	chr7:119536115-119536345(-)$1	230	171	203	34.5164
UGCCACAUUUUCUGUUCUUUCCUUUUUGUGAU	chr17:20783782-20784028(+)$1	246	201	233	34.0891
AAAUAAGAGAAAGAUUUAAUGUAACAAAACUG	chr17:34151516-34151860(+)$1	344	146	178	36.4704
GGAAACAUACCUUAAGuuuuuuuuguuuuguu	chr7:66420998-66421301(+)$1	303	46	78	39.0132
cugugccccccaaaaauauauauaaguaaaua	chr9:136139984-136140247(-)$1	263	53	85	37.8430
UCCAGAUGAAAUUAAAGUAAUACAACAGUCUG	chr3:37303374-37303652(+)$1	278	161	193	35.4048
AGCCUAUGAUUAAAAGCCAAGUGACUGAUAGG	chr5:53629381-53629676(+)$1	295	32	64	33.2978
AGACCAGAAaaaaacaaaaacaaaaacaaaaa	chr19:21326513-21326817(+)$1	304	158	190	38.8390
GAUUCUGUCUAAAUGUAcagucugccuccaga	chr7:16307257-16307509(+)$1	252	111	143	33.5212
gugugcaauagcugaauucuuccaaacacuua	chr7:119381384-119381673(-)$1	289	160	192	38.4630
GAGCCCAGACAAGGGUGAGGAAAGAAUAUGGG	chr8:91318341-91318602(+)$1	261	63	95	35.6200
caaacaaacaaacaaaauaacaacuauaaaaa	chr7:119375391-119375678(-)$1	287	198	230	38.3389
GGGUUAUCAAAUCAGUAAUUAAAAAUCUGCCC	chr1:93663006-93663309(+)$1	303	112	144	35.4176
AAGAUAUUGUACCUUGAGCACUUUAAAAAUGU	chr21:47863471-47863765(+)$1	294	98	130	30.0893
uuuuagaaaagaaaaauaauaaucauugcagu	chr22:19358757-19359012(-)$1	255	81	113	38.5070
AUUUAAUAAAAGCAGAAUAUUCAAAAAGUAAA	chr5:12751364-12751658(+)$1	294	102	134	38.1274
agcaaauuauaaugaaaguaaucagaaggaag	chr15:89841637-89841893(+)$1	256	162	194	34.8445
uggagaaauaauaagaaagcaaaaauaaagac	chr5:27479449-27479724(+)$1	275	205	237	38.1206
cuauuuauuuggcacauauucauccaucuuuu	chr14:31395602-31395942(-)$1	340	261	293	38.3985
AAGGAUCaaaaauaauuuguauaaauauaaaa	chr1:76206246-76206562(+)$1	316	44	76	38.0025
aagacaggaaaagauaaaugagacaaauacug	chr15:58313215-58313494(-)$1	279	198	230	33.4802
uuccaauaaacaauaagaaaaagaccaacuac	chr18:13033074-13033371(+)$1	297	157	189	38.4767
aaaagaagaggacagcauaggaagacagagac	chr7:120637936-120638215(+)$1	279	103	135	34.8445
Gagauaaaaacugaaacugagaaaaacuuuau	chr3:31661989-31662297(+)$1	308	223	255	33.3209
gguacauaaaaauucaaucaacaucauuagcc	chr22:19359612-19359885(-)$1	273	0	32	37.3239
aaugauaacaucagaaaaucaccauaacuguc	chr18:695383-695638(-)$1	255	114	146	35.9354
aauugaaaccacacauaauuuacaccuucaac	chr3:142249830-142250185(-)$1	355	207	239	30.9086
GAAGCCCUAUAAUAAACUUACUGAAUGUUGGG	chr19:10915267-10915549(+)$1	282	129	161	33.4802
auauuuaaaauauuuuaaaacuacaaaucuua	chr1:65994170-65994431(+)$1	261	53	85	38.7909

#DB
((((((.........................)	chr22:48129572-48129875(+)$1	1	105	137	38.0891
.((.(((((..................)))))	chr2:44169531-44169820(-)$1	1	185	217	32.0056
(..((((.........................	chr10:16496716-16497042(+)$1	1	34	66	38.2885
(((((((....................)))))	chr21:23689813-23690066(+)$1	1	93	125	36.0251
((.........................)))))	chr17:45243467-45243733(-)$1	1	18	50	32.9893
((((((((...................)))))	chr3:6600377-6600647(+)$1	1	189	221	30.0893
(((((((.........................	chr7:119375002-119375221(-)$1	1	106	138	39.0132
.((((((......................)))	chr2:178087689-178087945(+)$1	1	145	177	36.8573
.(((((.....................)))))	chr7:119397192-119397421(-)$1	1	35	67	34.3439
(((.............................	chrX:138021400-138021678(-)$1	1	106	138	38.6183
(((..((.........................	chr3:6616439-6616707(+)$1	1	60	92	38.2964
((...((.........................	chr17:47124605-47124912(+)$1	1	71	103	38.0862
..(((((.........................	chr12:69642999-69643321(+)$1	1	112	144	38.4715
((.((.(.........................	chr15:49586278-49586589(+)$1	1	137	169	38.1978
..(((((......................)))	chr7:119421085-119421306(-)$1	1	111	143	36.9374
(((((((..................)))))))	chr8:56802789-56803152(+)$1	1	291	323	33.0554
((((((........................))	chr18:1290361-1290644(-)$1	1	54	86	37.4750
.((((((.........................	chr21:23600495-23600770(+)$1	1	171	203	38.4998
((..(((....................)))..	chr8:130424952-130425200(-)$1	1	142	174	35.7654
((((.((........................)	chr4:79795451-79795708(+)$1	1	45	77	38.0750
(((((........................)).	chr15:50895845-50896130(-)$1	1	59	91	36.3630
(((((((........................)	chr21:22561516-22561786(+)$1	1	164	196	38.5070
(((.(((......................)))	chr6:49589362-49589637(-)$1	1	183	215	37.2974
.((((((........................)	chr11:68374272-68374607(+)$1	1	97	129	38.1274
(((((((...................))))))	chr17:2552831-2553214(+)$1	1	224	256	34.5766
(...(((..................)))....	chr7:129834730-129834996(-)$1	1	20	52	33.8001
(((((((.........................	chr7:119490118-119490362(-)$1	1	174	206	37.2551
(..((((((..................)))))	chr3:6554511-6554775(+)$1	1	72	104	31.9303
...(((((...................)))))	chr8:91263979-91264234(+)$1	1	93	125	33.2349
(((........................))))(	chr7:119536115-119536345(-)$1	1	171	203	34.5164
((((((((...................))).)	chr17:20783782-20784028(+)$1	1	201	233	34.0891
(((..((......................)).	chr17:34151516-34151860(+)$1	1	146	178	36.4704
(((((((.........................	chr7:66420998-66421301(+)$1	1	46	78	39.0132
((((.((.........................	chr9:136139984-136140247(-)$1	1	53	85	37.8430
(((((((....................)))))	chr3:37303374-37303652(+)$1	1	161	193	35.4048
..(((((....................)))))	chr5:53629381-53629676(+)$1	1	32	64	33.2978
(((.(((.........................	chr19:21326513-21326817(+)$1	1	158	190	38.8390
(((((((.....................))))	chr7:16307257-16307509(+)$1	1	111	143	33.5212
((((((..........................	chr7:119381384-119381673(-)$1	1	160	192	38.4630
(.(((((.....................))))	chr8:91318341-91318602(+)$1	1	63	95	35.6200
((.((((.........................	chr7:119375391-119375678(-)$1	1	198	230	38.3389
((((........................))))	chr1:93663006-93663309(+)$1	1	112	144	35.4176
((((((((...................)))))	chr21:47863471-47863765(+)$1	1	98	130	30.0893
(((((((........................)	chr22:19358757-19359012(-)$1	1	81	113	38.5070
.((((((........................)	chr5:12751364-12751658(+)$1	1	102	134	38.1274
...........................)))))	chr15:89841637-89841893(+)$1	1	162	194	34.8445
((((............................	chr5:27479449-27479724(+)$1	1	205	237	38.1206
((.((((.........................	chr14:31395602-31395942(-)$1	1	261	293	38.3985
((.((((.........................	chr1:76206246-76206562(+)$1	1	44	76	38.0025
....(((......................)))	chr15:58313215-58313494(-)$1	1	198	230	33.4802
(((((((.........................	chr18:13033074-13033371(+)$1	1	157	189	38.4767
...........................)))))	chr7:120637936-120638215(+)$1	1	103	135	34.8445
(.((((((...................)))))	chr3:31661989-31662297(+)$1	1	223	255	33.3209
(((..........................)))	chr22:19359612-19359885(-)$1	1	0	32	37.3239
.((((((.....................))))	chr18:695383-695638(-)$1	1	114	146	35.9354
..(((((...................))))).	chr3:142249830-142250185(-)$1	1	207	239	30.9086
....(((......................)))	chr19:10915267-10915549(+)$1	1	129	161	33.4802
(((((((.........................	chr1:65994170-65994431(+)$1	1	53	85	38.7909

#PSSM
f : 0.13	h : 0.10	= : 0.08	: : 0.08	c : 0.08	d : 0.08	g : 0.08	e : 0.06	i : 0.06	[ : 0.05	! : 0.05	^ : 0.03	" : 0.01	# : 0.01	$ : 0.01	
f : 0.18	h : 0.10	= : 0.08	c : 0.08	d : 0.08	e : 0.06	g : 0.06	: : 0.06	i : 0.05	! : 0.03	" : 0.03	[ : 0.03	^ : 0.03	b : 0.01	# : 0.01	$ : 0.01	
f : 0.20	e : 0.13	= : 0.08	h : 0.06	[ : 0.06	d : 0.06	! : 0.05	^ : 0.05	c : 0.05	i : 0.05	" : 0.03	g : 0.03	: : 0.03	b : 0.01	$ : 0.01	a : 0.01	
f : 0.18	d : 0.13	e : 0.12	^ : 0.10	= : 0.08	h : 0.06	[ : 0.05	! : 0.05	i : 0.05	" : 0.03	b : 0.03	g : 0.03	: : 0.03	
f : 0.18	e : 0.13	^ : 0.13	c : 0.10	d : 0.08	= : 0.08	h : 0.06	! : 0.03	b : 0.03	[ : 0.03	i : 0.03	g : 0.03	" : 0.01	
f : 0.17	^ : 0.15	e : 0.13	c : 0.12	d : 0.08	= : 0.08	b : 0.08	h : 0.06	i : 0.03	g : 0.03	[ : 0.01	
^ : 0.22	e : 0.12	f : 0.12	c : 0.12	d : 0.08	= : 0.08	b : 0.08	h : 0.06	i : 0.03	g : 0.03	a : 0.01	
^ : 0.87	e : 0.03	h : 0.03	f : 0.03	c : 0.01	
^ : 0.96	e : 0.01	f : 0.01	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.96	= : 0.01	c : 0.01	
^ : 0.93	= : 0.03	c : 0.01	e : 0.01	
^ : 0.65	e : 0.12	= : 0.05	h : 0.05	c : 0.05	f : 0.03	d : 0.01	g : 0.01	
^ : 0.58	e : 0.12	h : 0.06	= : 0.05	f : 0.05	d : 0.05	c : 0.03	4 : 0.01	g : 0.01	
^ : 0.44	e : 0.13	c : 0.10	h : 0.06	f : 0.06	= : 0.05	d : 0.05	b : 0.03	4 : 0.01	g : 0.01	
^ : 0.43	e : 0.13	f : 0.08	h : 0.06	c : 0.06	= : 0.05	d : 0.05	b : 0.03	2 : 0.01	4 : 0.01	] : 0.01	g : 0.01	
^ : 0.32	f : 0.15	e : 0.12	h : 0.06	c : 0.06	= : 0.05	2 : 0.03	i : 0.03	g : 0.03	d : 0.03	b : 0.01	] : 0.01	4 : 0.01	: : 0.01	

#score	2093.759778776855
#seq	58
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_transcript_m3_run1.txt

#BEAR
[eeeeerrrrrrrrreeeee]cc	chr4:10458474-10458728(-)$1	254	44	67	12.2834
eeee!!bbpppppppbb22eeee	chr17:76409366-76409631(+)$1	265	24	47	13.4362
dd!!ddddpppppppdddd4444	chr7:5436544-5436850(-)$1	306	257	280	14.5578
cc[eeeeepppppppeeeee]cc	chr14:104191520-104191758(+)$1	238	130	153	16.6299
[dddd[bbpppppppbb]dddd]	chr19:4391683-4391924(-)$1	241	114	137	13.5852
ccceeeeepppppppeeeee:::	chr15:66897901-66898153(+)$1	252	79	102	14.0257
dccc!!bbpppppppbb22ccc4	chr19:1409318-1409576(+)$1	258	114	137	13.4470
$$bb[cccpppppppcccbbggg	chr11:2720566-2720809(-)$1	243	104	127	12.7319
[ccc[cccpppppppccc]ccc]	chr1:2185705-2185950(+)$1	245	104	127	14.4188
$$$$$cccpppppppccc333ff	chr10:43903611-43903842(-)$1	231	115	138	13.0829
"""eeeeepppppppeeeee]dd	chr5:139029230-139029483(+)$1	253	152	175	16.4221
ee[eeeeepppppppeeeee]ee	chr2:236403880-236404179(+)$1	299	151	174	16.2592
ee[eeeeerrrrrrrrreeeeee	chr5:40797409-40797721(-)$1	312	15	38	11.5456
[a!!ddddpppppppdddd]a]i	chr7:158669757-158670069(+)$1	312	167	190	14.6994
c[ffffffpppppppffffffcc	chr1:31375497-31375758(-)$1	261	194	217	14.3696
d[dddd[apppppppa]dddddd	chr1:1284052-1284291(-)$1	239	195	218	13.7971
ggggggbbpppppppbb]ggggg	chr1:1155242-1155479(-)$1	237	41	64	14.1187
d!!eeeeepppppppeeeee]dd	chr19:5068670-5068901(+)$1	231	142	165	16.4934
ggggg[bbpppppppbbgggggg	chr1:178995673-178995926(+)$1	253	188	211	14.1633
eeeeeeeepppppppeeeee::B	chr16:15236062-15236304(-)$1	242	143	166	13.8102
eeeee[bbpppppppbbeeeee4	chr20:61568489-61568726(-)$1	237	104	127	14.7054
ga[eeeeepppppppeeeee444	chr16:584749-584996(+)$1	247	172	195	16.6077
igggggggpppppppggggggg0	chr5:154137933-154138186(+)$1	253	84	107	14.4270
f!!eeeeepppppppeeeee666	chr8:145682824-145683090(-)$1	266	155	178	15.4766
e[ffffffpppppppffffffee	chr17:76123267-76123507(-)$1	240	49	72	14.0578
#gggggggpppppppggggggg2	chr3:13021736-13022035(-)$1	299	44	67	14.5937
dddd[a[apppppppa]adddd]	chr19:11163413-11163741(+)$1	328	41	64	13.6239
DDDeeeeepppppppeeeee:cc	chr19:5959764-5959996(-)$1	232	80	103	12.6769
cc:eeeeepppppppeeeee:==	chr16:85677108-85677370(+)$1	262	60	83	14.6730
ggffffffpppppppffffff]g	chr1:1154921-1155174(-)$1	253	198	221	14.2869
#eeeeerrrrrrrrreeeee333	chr15:72522438-72522681(-)$1	243	172	195	12.3977
d[ffffffpppppppffffff]d	chr22:50625514-50625882(+)$1	368	45	68	14.2821
ddd[ddddpppppppdddd22dd	chr20:61566889-61567200(-)$1	311	235	258	13.7204
ddd!!cccpppppppccc]dddd	chr5:21480264-21480526(+)$1	262	151	174	13.8338
deeeeerrrrrrrrreeeee22d	chr9:138851799-138852102(-)$1	303	106	129	11.6477
bb[cccbbpppppppbb]ccc]b	chr1:1821281-1821537(-)$1	256	48	71	13.1683
fff[ddddpppppppdddd]fff	chr3:183353898-183354140(+)$1	242	168	191	13.8215
[eeeeerrrrrrrrreeeee]cc	chr1:246381149-246381417(-)$1	268	32	55	12.2834
ffffddddpppppppdddd4444	chr22:20933899-20934225(+)$1	326	61	84	14.1656
c[ffffffpppppppffffff]c	chr21:45299948-45300199(+)$1	251	33	56	14.4448
ff[eeeeepppppppeeeeefff	chr9:130734436-130734696(-)$1	260	11	34	15.8707
[bb[ddddpppppppdddd]bbb	chr22:50631009-50631281(+)$1	272	204	227	13.3700
ccceeeeepppppppeeeeeFFF	chr7:2087713-2087992(-)$1	279	58	81	15.2345
:gggggggpppppppggggggg:	chr12:125005188-125005444(-)$1	256	172	195	13.0595
:gggggggpppppppgggggggb	chr16:2055460-2055710(-)$1	250	132	155	13.6090
:::eeeeepppppppeeeeefff	chr17:80783064-80783342(+)$1	278	143	166	13.2162
===[ddddpppppppdddd====	chr15:85524331-85524579(+)$1	248	17	40	14.5552
dddeeeeepppppppeeeeeCCC	chr1:47696414-47696701(-)$1	287	119	142	13.2913
[dddd[bbpppppppbbdddddd	chr16:2565223-2565484(+)$1	261	35	58	13.4443
gggg!!bbpppppppbb]ggggg	chr19:942186-942438(+)$1	252	85	108	14.1528
"""eeeeepppppppeeeee333	chr1:27929047-27929308(-)$1	261	40	63	16.8456
dddeeeeepppppppeeeee:::	chr17:78234842-78235092(+)$1	250	167	190	13.8061
cc[eeeeepppppppeeeee]cc	chr2:236460700-236460974(+)$1	274	162	185	16.6299
!!ffffffpppppppffffff22	chr20:327674-327922(-)$1	248	150	173	14.2583
g[a!!cccpppppppccc22a22	chr3:195635535-195635822(-)$1	287	191	214	13.9200
ff:eeeeepppppppeeeee:::	chr19:2195573-2195842(+)$1	269	107	130	12.8821
gggggg[apppppppaggggggg	chr22:49995914-49996147(-)$1	233	20	43	14.6538
e!!eeeeepppppppeeeeeeee	chr8:145019553-145019849(-)$1	296	145	168	16.1500
hhffffffpppppppffffffhh	chr11:3411246-3411483(+)$1	237	71	94	13.2926
bbbeeeeepppppppeeeee]bb	chr2:242618456-242618722(-)$1	266	130	153	15.2731

#otherMatches

#Seq PSSM
GCGCGUUGAGCAGGUACGCGGGC	chr4:10458474-10458728(-)$1	254	44	67	12.2834
CUGUGUUGACUCGCCCAUGACAG	chr17:76409366-76409631(+)$1	265	24	47	13.4362
guaccccaaagaagauggguugg	chr7:5436544-5436850(-)$1	306	257	280	14.5578
GGAGGUUCGAGCUAGGAACCCCC	chr14:104191520-104191758(+)$1	238	130	153	16.6299
GACGGGUGGAACCAGCAGCUGUG	chr19:4391683-4391924(-)$1	241	114	137	13.5852
CAGUUUGCAAACUGAGCAAAUGA	chr15:66897901-66898153(+)$1	252	79	102	14.0257
UCCCAGCCUGGGUCUGGAGGGGU	chr19:1409318-1409576(+)$1	258	114	137	13.4470
CAGCGCGGCACUCUCCCGGCGGC	chr11:2720566-2720809(-)$1	243	104	127	12.7319
CUGCACUGAGAUCUCCAGCGUGA	chr1:2185705-2185950(+)$1	245	104	127	14.4188
GGGAAGGCACGGACGGCCGGGUG	chr10:43903611-43903842(-)$1	231	115	138	13.0829
CCAAAUUUACCCAUGAAGUUCGG	chr5:139029230-139029483(+)$1	253	152	175	16.4221
GGAGCAUCGUGUCCAGGUGCCCC	chr2:236403880-236404179(+)$1	299	151	174	16.2592
GGAGGCUGUCGAUUUACCGGCCC	chr5:40797409-40797721(-)$1	312	15	38	11.5456
GUUCCGGAUUGGUGUUCCGCGGC	chr7:158669757-158670069(+)$1	312	167	190	14.6994
GACUGUGGCUCUGGACUACAGCC	chr1:31375497-31375758(-)$1	261	194	217	14.3696
GUCCGUGGAGCGGGGCGAUGGCA	chr1:1284052-1284291(-)$1	239	195	218	13.7971
GAUGGGUCUCAGUUUGGCCCCGU	chr1:1155242-1155479(-)$1	237	41	64	14.1187
GCUUUCUGAUAACGCCAGAGCCA	chr19:5068670-5068901(+)$1	231	142	165	16.4934
GCUUGAGAUUUCAUUUCCGGGUG	chr1:178995673-178995926(+)$1	253	188	211	14.1633
GGCAUGGAAGAAGUGUCCAUGGC	chr16:15236062-15236304(-)$1	242	143	166	13.8102
UCCCAUGUUUCCGUUGCUGGGAA	chr20:61568489-61568726(-)$1	237	104	127	14.7054
GCUGUGUGAGUGGGACACGCCUG	chr16:584749-584996(+)$1	247	172	195	16.6077
CUAAGCCUGUUGUUAGGGUUUGU	chr5:154137933-154138186(+)$1	253	84	107	14.4270
AAAUGGCCAUUUCUGGGCCACCU	chr8:145682824-145683090(-)$1	266	155	178	15.4766
GGUUGGGGGUGAGGGCUCCAGCA	chr17:76123267-76123507(-)$1	240	49	72	14.0578
ACAUAAAUUACAGUUAUUUAUGG	chr3:13021736-13022035(-)$1	299	44	67	14.5937
CAGGACCGACUGCACCUGCCUGC	chr19:11163413-11163741(+)$1	328	41	64	13.6239
GCUCCCUAAAGAAAAUGGGGUUG	chr19:5959764-5959996(-)$1	232	80	103	12.6769
CUGCCUUGGUCAUGGCAAGGGGU	chr16:85677108-85677370(+)$1	262	60	83	14.6730
GGAGGGUUCCUGGGAAGCUCUGC	chr1:1154921-1155174(-)$1	253	198	221	14.2869
UGGCUCGGGGCCCGAGAGCUCGA	chr15:72522438-72522681(-)$1	243	172	195	12.3977
UGGGGUCCGAGGAGGGGGCCUGG	chr22:50625514-50625882(+)$1	368	45	68	14.2821
cugugcucucagucugggcccua	chr20:61566889-61567200(-)$1	311	235	258	13.7204
uauaaacaaaauauauguaauag	chr5:21480264-21480526(+)$1	262	151	174	13.8338
GGCUGCAAUUUUCUAGUGGCGAC	chr9:138851799-138852102(-)$1	303	106	129	11.6477
GAUGGCGCUCCCACCGCUGCCUU	chr1:1821281-1821537(-)$1	256	48	71	13.1683
UCGGUUCUGUCCGGGAGGAAUGA	chr3:183353898-183354140(+)$1	242	168	191	13.8215
uaacugcaacucauucaguuuua	chr1:246381149-246381417(-)$1	268	32	55	12.2834
UGUGUGGGUCCCUUUCCCAGAAA	chr22:20933899-20934225(+)$1	326	61	84	14.1656
AACUCAGGGUGUGGACUUGAGCU	chr21:45299948-45300199(+)$1	251	33	56	14.4448
UGGCAGGGUCAGUGCCCCUGCAU	chr9:130734436-130734696(-)$1	260	11	34	15.8707
GUCUGCGUUUGGUUUAUGCUGGG	chr22:50631009-50631281(+)$1	272	204	227	13.3700
uucgcagcccagguagcugcuca	chr7:2087713-2087992(-)$1	279	58	81	15.2345
UGGCUUAUUCUGAAUAUGAGUUU	chr12:125005188-125005444(-)$1	256	172	195	13.0595
UGGGGAAGGAAGUCGUUUCUCCU	chr16:2055460-2055710(-)$1	250	132	155	13.6090
UUGGGUCCUGAGUGUGGACCGUG	chr17:80783064-80783342(+)$1	278	143	166	13.2162
guuacggagccggaauucgaauu	chr15:85524331-85524579(+)$1	248	17	40	14.5552
GGUGAGCGACGUUGCCGCUUGGG	chr1:47696414-47696701(-)$1	287	119	142	13.2913
CAGUCUCAGCCUCCGUGGACUGG	chr16:2565223-2565484(+)$1	261	35	58	13.4443
AUGGCCCAAAUUACCUGACUGUC	chr19:942186-942438(+)$1	252	85	108	14.1528
UACCUGGCGAACAAAGUCGGCUC	chr1:27929047-27929308(-)$1	261	40	63	16.8456
GCCCCCGGGAAGUGGCCGGGGCA	chr17:78234842-78235092(+)$1	250	167	190	13.8061
CCUGCAGUUCUGCUUAUUGCUGG	chr2:236460700-236460974(+)$1	274	162	185	16.6299
UCUCCGCCGAGCAAAGGCGGGUC	chr20:327674-327922(-)$1	248	150	173	14.2583
CAGGAGGGAGAGGGACCCGGCGA	chr3:195635535-195635822(-)$1	287	191	214	13.9200
GCACCAGGUCACCACCCUGGGAG	chr19:2195573-2195842(+)$1	269	107	130	12.8821
ugcugguguccgccucccaguau	chr22:49995914-49996147(-)$1	233	20	43	14.6538
AUUCUCCUGGGCCUGAGGGGUGC	chr8:145019553-145019849(-)$1	296	145	168	16.1500
ccuaggggcauguuccuccuaau	chr11:3411246-3411483(+)$1	237	71	94	13.2926
GCCCUGGCAAGAAGGGCCAGUGG	chr2:242618456-242618722(-)$1	266	130	153	15.2731

#DB
.(((((.........))))).))	chr4:10458474-10458728(-)$1	1	44	67	12.2834
((((..((.......))..))))	chr17:76409366-76409631(+)$1	1	24	47	13.4362
((..((((.......))))....	chr7:5436544-5436850(-)$1	1	257	280	14.5578
((.(((((.......))))).))	chr14:104191520-104191758(+)$1	1	130	153	16.6299
.((((.((.......)).)))).	chr19:4391683-4391924(-)$1	1	114	137	13.5852
)))(((((.......)))))...	chr15:66897901-66898153(+)$1	1	79	102	14.0257
((((..((.......))..))).	chr19:1409318-1409576(+)$1	1	114	137	13.4470
..((.(((.......))))))))	chr11:2720566-2720809(-)$1	1	104	127	12.7319
.(((.(((.......))).))).	chr1:2185705-2185950(+)$1	1	104	127	14.4188
.....(((.......)))...))	chr10:43903611-43903842(-)$1	1	115	138	13.0829
...(((((.......))))).))	chr5:139029230-139029483(+)$1	1	152	175	16.4221
((.(((((.......))))).))	chr2:236403880-236404179(+)$1	1	151	174	16.2592
((.(((((.........))))))	chr5:40797409-40797721(-)$1	1	15	38	11.5456
.(..((((.......)))).).)	chr7:158669757-158670069(+)$1	1	167	190	14.6994
(.((((((.......))))))))	chr1:31375497-31375758(-)$1	1	194	217	14.3696
(.((((.(.......).))))))	chr1:1284052-1284291(-)$1	1	195	218	13.7971
((((((((.......)).)))))	chr1:1155242-1155479(-)$1	1	41	64	14.1187
(..(((((.......))))).))	chr19:5068670-5068901(+)$1	1	142	165	16.4934
(((((.((.......))))))))	chr1:178995673-178995926(+)$1	1	188	211	14.1633
)))(((((.......)))))..)	chr16:15236062-15236304(-)$1	1	143	166	13.8102
(((((.((.......))))))).	chr20:61568489-61568726(-)$1	1	104	127	14.7054
((.(((((.......)))))...	chr16:584749-584996(+)$1	1	172	195	16.6077
((((((((.......))))))).	chr5:154137933-154138186(+)$1	1	84	107	14.4270
(..(((((.......)))))...	chr8:145682824-145683090(-)$1	1	155	178	15.4766
(.((((((.......))))))))	chr17:76123267-76123507(-)$1	1	49	72	14.0578
.(((((((.......))))))).	chr3:13021736-13022035(-)$1	1	44	67	14.5937
((((.(.(.......).))))).	chr19:11163413-11163741(+)$1	1	41	64	13.6239
((((((((.......))))).((	chr19:5959764-5959996(-)$1	1	80	103	12.6769
)).(((((.......))))).((	chr16:85677108-85677370(+)$1	1	60	83	14.6730
((((((((.......)))))).)	chr1:1154921-1155174(-)$1	1	198	221	14.2869
.(((((.........)))))...	chr15:72522438-72522681(-)$1	1	172	195	12.3977
(.((((((.......)))))).)	chr22:50625514-50625882(+)$1	1	45	68	14.2821
(((.((((.......))))..))	chr20:61566889-61567200(-)$1	1	235	258	13.7204
(((..(((.......))).))))	chr5:21480264-21480526(+)$1	1	151	174	13.8338
((((((.........)))))..)	chr9:138851799-138852102(-)$1	1	106	129	11.6477
((.(((((.......)).))).)	chr1:1821281-1821537(-)$1	1	48	71	13.1683
(((.((((.......)))).)))	chr3:183353898-183354140(+)$1	1	168	191	13.8215
.(((((.........))))).))	chr1:246381149-246381417(-)$1	1	32	55	12.2834
((((((((.......))))....	chr22:20933899-20934225(+)$1	1	61	84	14.1656
(.((((((.......)))))).)	chr21:45299948-45300199(+)$1	1	33	56	14.4448
((.(((((.......))))))))	chr9:130734436-130734696(-)$1	1	11	34	15.8707
.((.((((.......)))).)))	chr22:50631009-50631281(+)$1	1	204	227	13.3700
)))(((((.......))))))))	chr7:2087713-2087992(-)$1	1	58	81	15.2345
.(((((((.......))))))).	chr12:125005188-125005444(-)$1	1	172	195	13.0595
.(((((((.......)))))))(	chr16:2055460-2055710(-)$1	1	132	155	13.6090
...(((((.......)))))(((	chr17:80783064-80783342(+)$1	1	143	166	13.2162
(((.((((.......))))))))	chr15:85524331-85524579(+)$1	1	17	40	14.5552
)))(((((.......))))))))	chr1:47696414-47696701(-)$1	1	119	142	13.2913
.((((.((.......))))))))	chr16:2565223-2565484(+)$1	1	35	58	13.4443
((((..((.......)).)))))	chr19:942186-942438(+)$1	1	85	108	14.1528
...(((((.......)))))...	chr1:27929047-27929308(-)$1	1	40	63	16.8456
)))(((((.......)))))...	chr17:78234842-78235092(+)$1	1	167	190	13.8061
((.(((((.......))))).))	chr2:236460700-236460974(+)$1	1	162	185	16.6299
..((((((.......))))))..	chr20:327674-327922(-)$1	1	150	173	14.2583
(.(..(((.......)))..)..	chr3:195635535-195635822(-)$1	1	191	214	13.9200
)).(((((.......)))))...	chr19:2195573-2195842(+)$1	1	107	130	12.8821
((((((.(.......))))))))	chr22:49995914-49996147(-)$1	1	20	43	14.6538
(..(((((.......))))))))	chr8:145019553-145019849(-)$1	1	145	168	16.1500
))((((((.......))))))((	chr11:3411246-3411483(+)$1	1	71	94	13.2926
((((((((.......))))).))	chr2:242618456-242618722(-)$1	1	130	153	15.2731

#PSSM
d : 0.18	[ : 0.11	e : 0.11	c : 0.11	g : 0.11	f : 0.08	: : 0.05	$ : 0.03	" : 0.03	# : 0.03	b : 0.03	i : 0.01	D : 0.01	= : 0.01	! : 0.01	h : 0.01	
e : 0.15	g : 0.15	d : 0.13	c : 0.11	[ : 0.09	! : 0.06	f : 0.06	b : 0.05	$ : 0.03	" : 0.03	a : 0.03	D : 0.01	: : 0.01	= : 0.01	h : 0.01	
f : 0.15	d : 0.13	g : 0.13	e : 0.11	[ : 0.11	! : 0.08	c : 0.06	b : 0.05	: : 0.05	" : 0.03	$ : 0.01	D : 0.01	= : 0.01	a : 0.01	
e : 0.44	f : 0.13	g : 0.13	! : 0.06	d : 0.06	[ : 0.06	c : 0.05	b : 0.01	$ : 0.01	
e : 0.43	d : 0.16	f : 0.11	g : 0.11	! : 0.08	[ : 0.05	$ : 0.01	c : 0.01	
e : 0.41	d : 0.13	f : 0.11	c : 0.09	g : 0.09	[ : 0.06	! : 0.05	a : 0.01	
e : 0.35	b : 0.15	d : 0.11	f : 0.11	c : 0.08	r : 0.06	g : 0.06	[ : 0.05	
e : 0.35	b : 0.15	d : 0.11	f : 0.11	c : 0.08	r : 0.06	g : 0.06	a : 0.05	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
e : 0.39	b : 0.15	d : 0.11	f : 0.11	c : 0.08	g : 0.06	a : 0.05	r : 0.01	
e : 0.39	b : 0.15	d : 0.11	f : 0.11	c : 0.08	g : 0.08	] : 0.03	r : 0.01	
e : 0.43	d : 0.15	f : 0.11	g : 0.09	c : 0.08	] : 0.06	2 : 0.03	a : 0.01	
e : 0.43	d : 0.18	g : 0.13	f : 0.11	2 : 0.05	] : 0.03	b : 0.01	3 : 0.01	c : 0.01	
e : 0.44	g : 0.13	f : 0.11	d : 0.08	c : 0.05	] : 0.05	4 : 0.03	2 : 0.03	b : 0.01	3 : 0.01	= : 0.01	
f : 0.16	g : 0.15	] : 0.13	: : 0.09	d : 0.08	e : 0.06	4 : 0.05	c : 0.05	3 : 0.05	a : 0.03	2 : 0.03	6 : 0.01	b : 0.01	F : 0.01	= : 0.01	C : 0.01	
g : 0.15	c : 0.13	d : 0.13	e : 0.09	] : 0.08	: : 0.06	f : 0.06	4 : 0.05	2 : 0.05	= : 0.03	3 : 0.03	b : 0.03	6 : 0.01	F : 0.01	C : 0.01	h : 0.01	
d : 0.13	c : 0.11	g : 0.09	e : 0.08	4 : 0.08	: : 0.06	f : 0.06	b : 0.06	] : 0.05	2 : 0.05	= : 0.03	3 : 0.03	i : 0.01	B : 0.01	0 : 0.01	6 : 0.01	F : 0.01	C : 0.01	h : 0.01	

#score	850.2896797851473
#seq	60
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_transcript_m1_run2.txt

#BEAR
ccc!!eeeee!!annnnna]eeeee4444ccc]c	chr19:16987287-16987512(+)$1	225	12	46	12.9897
%%%%%ccc[eeeeeooooooeeeee]ccceeeee	chr7:158475940-158476232(-)$1	292	183	217	14.9782
d!!dddd!!eeeeeooooooeeeee22ddddddd	chr1:19549732-19549990(-)$1	258	128	162	17.6292
eeeeeccc!!ddddoooooodddd22ccc]eeee	chr17:73230783-73231055(+)$1	272	73	107	15.0371
ee[eeeee[eeeeeooooooeeeee88888888e	chr1:160970931-160971150(-)$1	219	15	49	15.1223
[ccc$$$$$eeeeeooooooeeeee4444cccff	chr1:161195991-161196266(+)$1	275	79	113	18.4917
gggggdddd"""eeeeellleeeee333dddd]g	chr12:56822527-56822757(-)$1	230	150	184	13.3337
cc[dddd[aeeeeeooooooeeeee]a]dddd22	chr1:16046315-16046523(+)$1	208	41	75	17.1497
!!============oooooo============]g	chr9:139102968-139103174(-)$1	206	142	176	15.6290
[eeeeeeeeee[aooooooaeeeee55555eeee	chr20:2819447-2819705(-)$1	258	106	140	13.7155
eeee[eeeee!!eeeeellleeeee333eeeee4	chr7:45026002-45026222(-)$1	220	165	199	14.8068
Deeeee"""eeeeeooooooeeeee55555eeee	chr22:39123245-39123558(+)$1	313	9	43	15.1023
Eeeeeeeeeee[eeeeellleeeee333eeeee]	chr19:7685038-7685261(-)$1	223	113	147	13.9979
d[ccc####eeeeeooooooeeeee333ccc]dd	chr16:139723-139972(-)$1	249	165	199	19.4785
b[ccceeeee[cccooooooccc]eeeee]ccc]	chr11:61645836-61646061(-)$1	225	121	155	13.3311
[bb"""eeeeerrrrrrrrreeeee333bbccc]	chr1:54707619-54707928(-)$1	309	266	300	13.6208
c"""ccc!!eeeeeooooooeeeee22ccc333c	chr12:110011603-110011820(+)$1	217	102	136	18.6238
iiiiiiii[eeeeeooooooeeeeeiiiiiiiii	chr9:90252895-90253102(+)$1	207	147	181	17.8161
eeebb[bb!!ddddoooooodddd22bb]bb]ee	chr12:122620109-122620357(+)$1	248	38	72	13.0963
===========!!aooooooa22===========	chr10:81108699-81108965(+)$1	266	48	82	14.6818
dddd!!ccc[ddddoooooodddd22ccc22ddd	chr22:43557085-43557345(+)$1	260	47	81	13.8439
eee:eeeeeeeeeeooooooeeeee333eeeee:	chr5:176980244-176980483(-)$1	239	75	109	17.1929
##ccc!!eeeee[aooooooa]eeeee22ccc44	chr2:27459599-27459849(+)$1	250	184	218	15.6921
ffff[a!!eeeee[allla]eeeee22a]fffff	chr20:32247547-32247798(-)$1	251	123	157	14.1523
3ddddccc[eeeeeooooooeeeee]cccFFFFF	chr19:1249769-1250019(+)$1	250	151	185	14.8497
ffffff[a[eeeeeooooooeeeee]a]ffffff	chr9:134346271-134346520(+)$1	249	96	130	17.2046
="""dddd!!bbbboooooobb]bb333dddd]=	chr20:45910704-45910928(-)$1	224	122	156	12.7284
[a####eeeeerrrrrrrrreeeee22a]ccc]h	chr16:30774780-30775065(+)$1	285	100	134	13.6085
bbbb[ddddeeeeeooooooeeeee]dddd]bb3	chr4:174255148-174255387(-)$1	239	44	78	15.4116
ggggg[ccc[ddddooooooddddcccggggggg	chr17:73805696-73805960(+)$1	264	83	117	14.1159
ggggg!!ccc[eeeeemmmmeeeee]ccc]gggg	chr10:93576886-93577091(+)$1	205	58	92	12.7430
!!bb[eeeeeddddoooooodddd22eeeeebb2	chr20:60962631-60962847(+)$1	216	63	97	14.0779
===========[eeeeellleeeee]========	chr16:734032-734308(-)$1	276	1	35	14.1603
====bb[a[eeeeeooooooeeeee]abb]====	chr19:39336125-39336389(-)$1	264	166	200	17.7482
eeee"""bbeeeeeooooooeeeee]bbeeeee:	chr12:58114201-58114448(+)$1	247	127	161	16.3002
==============oooooo==============	chr1:46736376-46736609(+)$1	233	137	171	15.4821
:eeeee[a[eeeeeooooooeeeee]a333eeee	chr12:6976744-6976948(+)$1	204	97	131	18.2212
d[bb[iiiiiiiiiooooooiiiiiiiii]bb]d	chr17:80048653-80048857(-)$1	204	136	170	13.2354
dddddd"""eeeeeooooooeeeee22dddd]dd	chr19:2235863-2236142(-)$1	279	191	225	17.5149
gggg$$$$$eeeeeooooooeeeee22ggggggg	chr17:20910184-20910442(-)$1	258	201	235	18.0422
dddd####ddddrrrrrrrrrdddd4444dddd]	chr14:75558035-75558319(-)$1	284	122	156	11.3825
[eeeeeccceeeeeooooooeeeee4444ccc22	chr12:58221205-58221502(-)$1	297	82	116	18.6017
b[ccc!!a[eeeeeooooooeeeeea22ccc]bb	chr15:75660270-75660497(-)$1	227	7	41	17.7149
eeeeeeeeeeeeeeooooooeeeee4444eeeee	chr14:90730395-90730715(+)$1	320	156	190	18.9142
ccc[eeeee"""eeeeellleeeee4444eeeee	chr1:38033667-38033984(-)$1	317	3	37	13.7019
eeee!!eeeeeeeeeemmmmeeeee22eeeee22	chr16:30087506-30087714(+)$1	208	140	174	13.5032
""bb####bb[cccoooooocccbb333bb]fff	chr10:100190182-100190409(-)$1	227	62	96	13.5126
fffff"""a[ddddoooooodddd]affffff]f	chr1:3689252-3689455(+)$1	203	139	173	13.7141
eeee[a"""eeeeeooooooeeeee333aeeeee	chr1:153925132-153925431(-)$1	299	1	35	20.0134
"""gggggggddddoooooodddd333ggggggg	chr21:45540089-45540333(+)$1	244	71	105	15.7664

#otherMatches

#Seq PSSM
AUGUUCCUGCAGCGCAAAGGGCAGGUGAUCAUGA	chr19:16987287-16987512(+)$1	225	12	46	12.9897
CAUGUUCCACGGGAUACACCUUCCGAGGAGGUCU	chr7:158475940-158476232(-)$1	292	183	217	14.9782
GUAGCUCCAGAGGUCUCCCUGCCUCCUGAGUCCU	chr1:19549732-19549990(-)$1	258	128	162	17.6292
GCCUUGCCCCUUUUGGAACAGAAACAGGUGAAGG	chr17:73230783-73231055(+)$1	272	73	107	15.0371
GCAUUGGGCAGUGUUACAGUGCACUCUUCUGAAC	chr1:160970931-160971150(-)$1	219	15	49	15.1223
UCAAAGAUGGGGCGGGAGUGUGCCUAGGGUUGUC	chr1:161195991-161196266(+)$1	275	79	113	18.4917
CUGGUGCUUUUUUCCUGAUUCAGGGUUCAGGUGA	chr12:56822527-56822757(-)$1	230	150	184	13.3337
CUCCGUCACCUCCACCAACCUGGAGUGGGAUGAC	chr1:16046315-16046523(+)$1	208	41	75	17.1497
CUGCCGUGGGGCUUGUCCCUGAGCUUUGCGGCCU	chr9:139102968-139103174(-)$1	206	142	176	15.6290
UUCCUCACUCGUGUUUACUCCGAGUACCUUGAGG	chr20:2819447-2819705(-)$1	258	106	140	13.7155
GCACCAGUGAUUCUUGGAGACCAAGCCUUCACUA	chr7:45026002-45026222(-)$1	220	165	199	14.8068
UUUCCCCACGUUUGAAUCCCCAAGCCUCCUGGGA	chr22:39123245-39123558(+)$1	313	9	43	15.1023
AGCUGGCUGAGUUCCUGAUCCAGGGCAUCUCAGC	chr19:7685038-7685261(-)$1	223	113	147	13.9979
GAGGAGCCCCGUCCGCGAGAGGACGACGUCCCCU	chr16:139723-139972(-)$1	249	165	199	19.4785
CUGAGGGGGAGCUAAUGCACUGGGUCCCCACUCU	chr11:61645836-61646061(-)$1	225	121	155	13.3311
UCAUCAAGGGCUCCACCCCUGCCCUGCCUGCCCA	chr1:54707619-54707928(-)$1	309	266	300	13.6208
cggcgcgAGGUCCUAGACCCAGGACGACGCUGAG	chr12:110011603-110011820(+)$1	217	102	136	18.6238
CCUUGGUUGUUUCUCUGCUAAGAAAAAUUGAGGC	chr9:90252895-90253102(+)$1	207	147	181	17.8161
CCCUGGGGAAGGGCGAGCAGGUCCCGCUGCAUGG	chr12:122620109-122620357(+)$1	248	38	72	13.0963
GGGGGUGGGUGGGUGCUGAGAGACACCCACCUUC	chr10:81108699-81108965(+)$1	266	48	82	14.6818
UGGGCAGCUGGCCCUGAACUGGGCAUGGCCCCCC	chr22:43557085-43557345(+)$1	260	47	81	13.8439
CCUAAGCUUGCUCUGACAAAAGAGUUUUGAGUUG	chr5:176980244-176980483(-)$1	239	75	109	17.1929
CCCACUCUUUGUCCUGGACUGCACAGACUGUGAA	chr2:27459599-27459849(+)$1	250	184	218	15.6921
GGUGGGAGGCCUGGCCGAGGCAGGCACCGCAUCC	chr20:32247547-32247798(-)$1	251	123	157	14.1523
GGGAGGGGACGCGCGAGGAAGCGCGACCCGGGCG	chr19:1249769-1250019(+)$1	250	151	185	14.8497
CAGGUAAGCACUGUGGUCUGACGGUCCAUACCUG	chr9:134346271-134346520(+)$1	249	96	130	17.2046
UGAACUUUGAUACUGUUAUGAGAUAAGAAAAGAA	chr20:45910704-45910928(-)$1	224	122	156	12.7284
GUAGGACCAGAGUGCUGGGAUCUGGGGAGCUUAA	chr16:30774780-30775065(+)$1	285	100	134	13.6085
CAGUGGCUCUCGGGGUCUGACCCGGCGAGCGGCA	chr4:174255148-174255387(-)$1	239	44	78	15.4116
UGGGAAGCAAGAGACUUCAUUCUCUGCUCCCGGC	chr17:73805696-73805960(+)$1	264	83	117	14.1159
CAUUGGAUUUAGCAGAUCCAUCUGCCAAAGCAGU	chr10:93576886-93577091(+)$1	205	58	92	12.7430
AAGGACCACGCAUCCAUCCAGAUGAACGUGGCCG	chr20:60962631-60962847(+)$1	216	63	97	14.0779
UCGCGGUUGCUCGCGCUCUGGGCGCUGGCGGCUG	chr16:734032-734308(-)$1	276	1	35	14.1603
UCUUUGAGCCAGCAUGUGUCUGCUGACCACGGGA	chr19:39336125-39336389(-)$1	264	166	200	17.7482
gcccccagcccuccuggaguggaggugcgggcuu	chr12:58114201-58114448(+)$1	247	127	161	16.3002
CUUUGGGGGCUUUGCCUCUCUAGAGCCCUCAAAG	chr1:46736376-46736609(+)$1	233	137	171	15.4821
ACCGGUAAGCCCUCGCCGAGGAGGGGUCUggccg	chr12:6976744-6976948(+)$1	204	97	131	18.2212
CCCCAGGGCUCUGGCUUUCCCUGGAGCCCAGGAG	chr17:80048653-80048857(-)$1	204	136	170	13.2354
CUCUUCUACUUUCGGACAGACGAGGCCGAGGUAG	chr19:2235863-2236142(-)$1	279	191	225	17.5149
GGAGCUGGACAUGACCCCUUUCAUGGCCUCCAGG	chr17:20910184-20910442(-)$1	258	201	235	18.0422
GCUGUAUAUCUGUCAGUGUUUCAGAGCUCUAGCC	chr14:75558035-75558319(-)$1	284	122	156	11.3825
UGGGAAAGGCAGUGAGAUGGCACUGACCACCUCC	chr12:58221205-58221502(-)$1	297	82	116	18.6017
CCGGAGAGACUUCCCUACCAGGAGGCAGUCCAGC	chr15:75660270-75660497(-)$1	227	7	41	17.7149
GGUUUCUGUUGUCCCAUUUAGGAUACUUUGCAGG	chr14:90730395-90730715(+)$1	320	156	190	18.9142
GUUACUUUGCUUUUCUGUUUCAGAAUAUCCAAGG	chr1:38033667-38033984(-)$1	317	3	37	13.7019
GCGGUGCGGAGGGGGCGGCGGCCCCGACUCUGAC	chr16:30087506-30087714(+)$1	208	140	174	13.5032
CAGCAGAGGACGACAUUCAGGUCUCAGGGCAGCU	chr10:100190182-100190409(-)$1	227	62	96	13.5126
GCCGCAGUGGGCAGGUGCGACUGUGCGCGGCCUC	chr1:3689252-3689455(+)$1	203	139	173	13.7141
gccucggccucccaaagugcugggauuacaggca	chr1:153925132-153925431(-)$1	299	1	35	20.0134
AGGGAUCCUGGCCGAAGCCGUGGCACACAGGGUU	chr21:45540089-45540333(+)$1	244	71	105	15.7664

#DB
(((..(((((..(.....).)))))....))).)	chr19:16987287-16987512(+)$1	1	12	46	12.9897
.....(((.(((((......))))).))))))))	chr7:158475940-158476232(-)$1	1	183	217	14.9782
(..((((..(((((......)))))..)))))))	chr1:19549732-19549990(-)$1	1	128	162	17.6292
((((((((..((((......))))..))).))))	chr17:73230783-73231055(+)$1	1	73	107	15.0371
((.(((((.(((((......)))))........)	chr1:160970931-160971150(-)$1	1	15	49	15.1223
.(((.....(((((......)))))....)))))	chr1:161195991-161196266(+)$1	1	79	113	18.4917
(((((((((...(((((...)))))...)))).)	chr12:56822527-56822757(-)$1	1	150	184	13.3337
((.((((.((((((......))))).).))))..	chr1:16046315-16046523(+)$1	1	41	75	17.1497
..((((((((((((......)))))))))))).)	chr9:139102968-139103174(-)$1	1	142	176	15.6290
.((((((((((.(......)))))).....))))	chr20:2819447-2819705(-)$1	1	106	140	13.7155
((((.(((((..(((((...)))))...))))).	chr7:45026002-45026222(-)$1	1	165	199	14.8068
((((((...(((((......))))).....))))	chr22:39123245-39123558(+)$1	1	9	43	15.1023
(((((((((((.(((((...)))))...))))).	chr19:7685038-7685261(-)$1	1	113	147	13.9979
(.(((....(((((......)))))...))).))	chr16:139723-139972(-)$1	1	165	199	19.4785
(.((((((((.(((......))).))))).))).	chr11:61645836-61646061(-)$1	1	121	155	13.3311
.((...(((((.........)))))...))))).	chr1:54707619-54707928(-)$1	1	266	300	13.6208
(...(((..(((((......)))))..)))...)	chr12:110011603-110011820(+)$1	1	102	136	18.6238
((((((((.(((((......))))))))))))))	chr9:90252895-90253102(+)$1	1	147	181	17.8161
(((((.((..((((......))))..)).)).))	chr12:122620109-122620357(+)$1	1	38	72	13.0963
(((((((((((..(......)..)))))))))))	chr10:81108699-81108965(+)$1	1	48	82	14.6818
((((..(((.((((......))))..)))..)))	chr22:43557085-43557345(+)$1	1	47	81	13.8439
))).((((((((((......)))))...))))).	chr5:176980244-176980483(-)$1	1	75	109	17.1929
..(((..(((((.(......).)))))..)))..	chr2:27459599-27459849(+)$1	1	184	218	15.6921
((((.(..(((((.(...).)))))..).)))))	chr20:32247547-32247798(-)$1	1	123	157	14.1523
.))))(((.(((((......))))).))))))))	chr19:1249769-1250019(+)$1	1	151	185	14.8497
((((((.(.(((((......))))).).))))))	chr9:134346271-134346520(+)$1	1	96	130	17.2046
(...((((..((((......)).))...)))).)	chr20:45910704-45910928(-)$1	1	122	156	12.7284
.(....(((((.........)))))..).))).)	chr16:30774780-30775065(+)$1	1	100	134	13.6085
((((.(((((((((......))))).)))).)).	chr4:174255148-174255387(-)$1	1	44	78	15.4116
(((((.(((.((((......))))))))))))))	chr17:73805696-73805960(+)$1	1	83	117	14.1159
(((((..(((.(((((....))))).))).))))	chr10:93576886-93577091(+)$1	1	58	92	12.7430
..((.(((((((((......))))..))))))).	chr20:60962631-60962847(+)$1	1	63	97	14.0779
(((((((((((.(((((...))))).))))))))	chr16:734032-734308(-)$1	1	1	35	14.1603
((((((.(.(((((......))))).))).))))	chr19:39336125-39336389(-)$1	1	166	200	17.7482
((((...(((((((......))))).))))))).	chr12:58114201-58114448(+)$1	1	127	161	16.3002
((((((((((((((......))))))))))))))	chr1:46736376-46736609(+)$1	1	137	171	15.4821
.(((((.(.(((((......))))).)...))))	chr12:6976744-6976948(+)$1	1	97	131	18.2212
(.((.(((((((((......))))))))).)).)	chr17:80048653-80048857(-)$1	1	136	170	13.2354
((((((...(((((......)))))..)))).))	chr19:2235863-2236142(-)$1	1	191	225	17.5149
((((.....(((((......)))))..)))))))	chr17:20910184-20910442(-)$1	1	201	235	18.0422
((((....((((.........))))....)))).	chr14:75558035-75558319(-)$1	1	122	156	11.3825
.(((((((((((((......)))))....)))..	chr12:58221205-58221502(-)$1	1	82	116	18.6017
(.(((..(.(((((......))))))..))).))	chr15:75660270-75660497(-)$1	1	7	41	17.7149
))))((((((((((......)))))....)))))	chr14:90730395-90730715(+)$1	1	156	190	18.9142
(((.(((((...(((((...)))))....)))))	chr1:38033667-38033984(-)$1	1	3	37	13.7019
((((..((((((((((....)))))..)))))..	chr16:30087506-30087714(+)$1	1	140	174	13.5032
..((....((.(((......)))))...)).)))	chr10:100190182-100190409(-)$1	1	62	96	13.5126
(((((...(.((((......)))).))))))).)	chr1:3689252-3689455(+)$1	1	139	173	13.7141
((((.(...(((((......)))))...))))))	chr1:153925132-153925431(-)$1	1	1	35	20.0134
...(((((((((((......))))...)))))))	chr21:45540089-45540333(+)$1	1	71	105	15.7664

#PSSM
e : 0.18	d : 0.12	[ : 0.10	= : 0.10	c : 0.08	g : 0.08	b : 0.06	f : 0.06	! : 0.04	" : 0.04	% : 0.02	D : 0.02	E : 0.02	i : 0.02	# : 0.02	3 : 0.02	: : 0.02	
e : 0.27	c : 0.08	g : 0.08	[ : 0.08	" : 0.08	= : 0.08	d : 0.08	! : 0.06	f : 0.06	b : 0.04	% : 0.02	i : 0.02	# : 0.02	a : 0.02	
e : 0.25	c : 0.14	= : 0.10	b : 0.10	g : 0.08	d : 0.08	" : 0.06	f : 0.06	[ : 0.04	% : 0.02	! : 0.02	i : 0.02	# : 0.02	
e : 0.23	d : 0.12	c : 0.10	g : 0.10	= : 0.10	b : 0.10	" : 0.06	f : 0.06	! : 0.02	% : 0.02	i : 0.02	: : 0.02	# : 0.02	[ : 0.02	
e : 0.19	[ : 0.12	d : 0.10	c : 0.10	g : 0.08	= : 0.08	! : 0.06	# : 0.06	$ : 0.04	" : 0.04	b : 0.04	f : 0.04	% : 0.02	i : 0.02	
e : 0.25	d : 0.12	! : 0.10	c : 0.08	= : 0.08	# : 0.08	" : 0.06	$ : 0.04	i : 0.04	[ : 0.04	a : 0.04	f : 0.02	b : 0.02	g : 0.02	
e : 0.25	c : 0.14	d : 0.10	" : 0.10	= : 0.08	! : 0.08	# : 0.06	[ : 0.06	$ : 0.04	i : 0.04	b : 0.02	g : 0.02	
e : 0.27	c : 0.14	= : 0.08	" : 0.08	a : 0.08	! : 0.06	d : 0.06	# : 0.06	$ : 0.04	i : 0.04	b : 0.04	[ : 0.02	g : 0.02	
e : 0.27	[ : 0.16	! : 0.10	= : 0.08	c : 0.08	d : 0.06	" : 0.06	$ : 0.04	a : 0.04	b : 0.04	# : 0.02	i : 0.02	g : 0.02	
e : 0.66	= : 0.08	! : 0.06	[ : 0.06	" : 0.04	c : 0.02	i : 0.02	d : 0.02	b : 0.02	g : 0.02	
e : 0.58	d : 0.16	= : 0.08	[ : 0.06	! : 0.04	" : 0.04	b : 0.02	i : 0.02	
e : 0.52	d : 0.16	! : 0.06	[ : 0.06	" : 0.04	= : 0.04	c : 0.04	r : 0.04	b : 0.02	i : 0.02	
e : 0.60	d : 0.14	r : 0.06	a : 0.04	= : 0.04	c : 0.04	! : 0.02	[ : 0.02	b : 0.02	i : 0.02	
e : 0.58	d : 0.14	r : 0.06	= : 0.04	c : 0.04	a : 0.04	n : 0.02	o : 0.02	[ : 0.02	b : 0.02	i : 0.02	
o : 0.76	e : 0.14	r : 0.06	n : 0.02	a : 0.02	
o : 0.76	e : 0.14	r : 0.06	n : 0.02	l : 0.02	
o : 0.76	e : 0.10	r : 0.06	m : 0.04	n : 0.02	l : 0.02	
o : 0.76	l : 0.12	r : 0.06	m : 0.04	n : 0.02	
o : 0.76	l : 0.10	r : 0.06	a : 0.04	m : 0.04	
o : 0.74	l : 0.10	r : 0.06	] : 0.04	m : 0.04	a : 0.02	
e : 0.68	d : 0.14	= : 0.04	c : 0.04	a : 0.04	b : 0.02	i : 0.02	r : 0.02	
e : 0.68	d : 0.16	= : 0.04	c : 0.04	2 : 0.02	] : 0.02	b : 0.02	i : 0.02	
e : 0.70	d : 0.16	= : 0.04	c : 0.04	2 : 0.02	] : 0.02	i : 0.02	
e : 0.70	d : 0.16	= : 0.06	b : 0.04	] : 0.02	i : 0.02	
e : 0.72	2 : 0.08	= : 0.06	b : 0.04	c : 0.02	i : 0.02	d : 0.02	] : 0.02	3 : 0.02	
2 : 0.21	] : 0.19	3 : 0.19	4 : 0.12	= : 0.06	5 : 0.04	e : 0.04	i : 0.04	a : 0.04	8 : 0.02	c : 0.02	
3 : 0.19	2 : 0.16	4 : 0.12	c : 0.12	a : 0.08	= : 0.08	e : 0.06	5 : 0.04	i : 0.04	b : 0.04	8 : 0.02	d : 0.02	f : 0.02	
3 : 0.19	4 : 0.12	c : 0.12	= : 0.08	d : 0.06	e : 0.06	b : 0.06	g : 0.06	] : 0.04	5 : 0.04	i : 0.04	2 : 0.04	a : 0.04	8 : 0.02	f : 0.02	
c : 0.16	e : 0.14	4 : 0.12	d : 0.12	= : 0.08	b : 0.06	] : 0.06	g : 0.06	5 : 0.04	i : 0.04	f : 0.04	8 : 0.02	2 : 0.02	3 : 0.02	a : 0.02	
e : 0.19	c : 0.16	d : 0.14	] : 0.10	= : 0.08	b : 0.06	f : 0.06	g : 0.06	5 : 0.04	8 : 0.02	i : 0.02	2 : 0.02	F : 0.02	3 : 0.02	
e : 0.27	c : 0.18	d : 0.12	= : 0.10	g : 0.08	f : 0.06	b : 0.04	] : 0.04	8 : 0.02	3 : 0.02	i : 0.02	2 : 0.02	F : 0.02	
e : 0.25	c : 0.14	d : 0.12	= : 0.10	] : 0.08	f : 0.08	g : 0.08	b : 0.06	8 : 0.02	3 : 0.02	i : 0.02	F : 0.02	
e : 0.25	] : 0.14	d : 0.10	f : 0.08	= : 0.08	g : 0.08	2 : 0.06	b : 0.06	c : 0.04	8 : 0.02	3 : 0.02	i : 0.02	4 : 0.02	F : 0.02	
e : 0.19	g : 0.12	d : 0.10	f : 0.10	= : 0.10	2 : 0.08	] : 0.08	c : 0.04	4 : 0.04	: : 0.04	i : 0.02	F : 0.02	h : 0.02	3 : 0.02	b : 0.02	

#score	771.784012805051
#seq	50
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565RQI_SSB_transcript_m2_run1.txt

#BEAR
ggggggooooooggggggg	chr14:20811347-20811558(-)$1	211	76	95	11.9725
!ffffffnnnnnffffff]	chr9:35657833-35658036(-)$1	203	33	52	7.5643
[gggggggmmmmggggggg	chr9:35657813-35658022(-)$1	209	179	198	7.7400
bb[cccooooooccc]bb=	chr17:76187174-76187455(+)$1	281	142	161	9.1201
ggggggooooooggggggg	chr14:20811343-20811547(-)$1	204	65	84	11.9725
ggggg[ccclllccc]ggg	chr11:10529788-10530052(-)$1	264	161	180	7.4465
!!ffffffmmmmffffff]	chr21:47558638-47558850(-)$1	212	171	190	6.8995
ggggggooooooggggggg	chr14:20811381-20811584(-)$1	203	102	121	11.9725
ggggggooooooggggggg	chr14:20811373-20811575(-)$1	202	93	112	11.9725
'eeeeeooooooeeeee88	chr9:35657822-35658024(-)$1	202	45	64	9.7443
hhh[bboooooobb]hhhh	chr17:8076801-8077006(-)$1	205	35	54	8.4540
'eeeeeooooooeeeee88	chr9:35657873-35658105(-)$1	232	126	145	9.7443
ggggggooooooggggggg	chr14:20811375-20811581(-)$1	206	99	118	11.9725
!!ffffffmmmmffffff]	chr21:47558591-47558838(-)$1	247	159	178	6.8995
'eeeeeooooooeeeee88	chr9:35657852-35658060(-)$1	208	81	100	9.7443
'eeeeeooooooeeeee88	chr9:35657844-35658050(-)$1	206	71	90	9.7443
'eeeeeooooooeeeee88	chr9:35657860-35658069(-)$1	209	90	109	9.7443
'eeeeeooooooeeeee88	chr9:35657869-35658073(-)$1	204	94	113	9.7443
ggggggooooooggggggg	chr14:20811412-20811617(-)$1	205	135	154	11.9725
!ffffffnnnnnffffff]	chr9:35657850-35658052(-)$1	202	49	68	7.5643
ee!!bboooooobb]eeee	chr16:50604953-50605217(+)$1	264	27	46	9.0639
ggggggooooooggggggg	chr14:20811398-20811600(-)$1	202	118	137	11.9725
==ddddoooooodddd]==	chr17:73029900-73030181(+)$1	281	181	200	8.9686
ffffffooooooffffff:	chr17:7480027-7480274(+)$1	247	205	224	9.7962
ffffffooooooffffffd	chr17:7480116-7480359(+)$1	243	116	135	10.4435
=========lll=======	chr11:10822982-10823217(-)$1	235	96	115	8.2768
ggggggooooooggggggg	chr14:20811417-20811624(-)$1	207	142	161	11.9725
ggggggooooooggggggg	chr14:20811391-20811596(-)$1	205	114	133	11.9725
!!ffffffmmmmffffff]	chr21:47558559-47558791(-)$1	232	112	131	6.8995
####bboooooobb22eee	chr2:86276140-86276361(-)$1	221	140	159	8.3541
ccccccooooooccc]ccc	chr21:47559794-47560051(-)$1	257	156	175	9.7893
gggggggnnnnnggggggg	chr2:11721927-11722249(+)$1	322	26	45	8.3973
ff[cccoooooocccffff	chr17:27049545-27049810(+)$1	265	145	164	10.1778
!!ffffffmmmmffffff]	chr21:47558657-47558894(-)$1	237	215	234	6.8995
ggggggooooooggggggg	chr14:20811358-20811562(-)$1	204	80	99	11.9725
gggggggnnnnnggggggg	chr3:186502554-186502795(+)$1	241	52	71	8.3973
ddd[bboooooobb]dddd	chr16:50623237-50623460(+)$1	223	96	115	8.0377
'eeeeeooooooeeeee88	chr9:35657836-35658044(-)$1	208	65	84	9.7443
ggggggooooooggggggg	chr14:20811366-20811573(-)$1	207	91	110	11.9725
ggggggooooooggggggg	chr14:20811384-20811591(-)$1	207	109	128	11.9725
ggggggooooooggggggg	chr14:20811362-20811566(-)$1	204	84	103	11.9725
ggggggooooooggggggg	chr14:20811400-20811612(-)$1	212	130	149	11.9725
=========lll=======	chr16:28883235-28883471(+)$1	236	194	213	8.2768
'eeeeeooooooeeeee88	chr9:35657824-35658033(-)$1	209	54	73	9.7443
=========lll=======	chr5:138066716-138067009(+)$1	293	141	160	8.2768
ggggggooooooggggggg	chr14:20811424-20811649(-)$1	225	167	186	11.9725
ffffffooooooffffff:	chr17:7480112-7480316(+)$1	204	120	139	9.7962

#otherMatches

#Seq PSSM
AGGGCCAGAGGCGGCCCUA	chr14:20811347-20811558(-)$1	211	76	95	11.9725
AGGCCUGUAUCCUAGGCUA	chr9:35657833-35658036(-)$1	203	33	52	7.5643
CGUGGCGCGGGGGCGUCAU	chr9:35657813-35658022(-)$1	209	179	198	7.7400
CUGCAGGGACUACUGGAGG	chr17:76187174-76187455(+)$1	281	142	161	9.1201
AGGGCCAGAGGCGGCCCUA	chr14:20811343-20811547(-)$1	204	65	84	11.9725
UCUAGCAUUCUCAGUAUUA	chr11:10529788-10530052(-)$1	264	161	180	7.4465
UUUGGGAAUGACUUCCCAU	chr21:47558638-47558850(-)$1	212	171	190	6.8995
AGGGCCAGAGGCGGCCCUA	chr14:20811381-20811584(-)$1	203	102	121	11.9725
AGGGCCAGAGGCGGCCCUA	chr14:20811373-20811575(-)$1	202	93	112	11.9725
UGAGGACUCUGUUCCUCCC	chr9:35657822-35658024(-)$1	202	45	64	9.7443
UGAACUCACCCUAGCUUGU	chr17:8076801-8077006(-)$1	205	35	54	8.4540
UGAGGACUCUGUUCCUCCC	chr9:35657873-35658105(-)$1	232	126	145	9.7443
AGGGCCAGAGGCGGCCCUA	chr14:20811375-20811581(-)$1	206	99	118	11.9725
UUUGGGAAUGACUUCCCAU	chr21:47558591-47558838(-)$1	247	159	178	6.8995
UGAGGACUCUGUUCCUCCC	chr9:35657852-35658060(-)$1	208	81	100	9.7443
UGAGGACUCUGUUCCUCCC	chr9:35657844-35658050(-)$1	206	71	90	9.7443
UGAGGACUCUGUUCCUCCC	chr9:35657860-35658069(-)$1	209	90	109	9.7443
UGAGGACUCUGUUCCUCCC	chr9:35657869-35658073(-)$1	204	94	113	9.7443
AGGGCCAGAGGCGGCCCUA	chr14:20811412-20811617(-)$1	205	135	154	11.9725
AGGCCUGUAUCCUAGGCUA	chr9:35657850-35658052(-)$1	202	49	68	7.5643
UUGAAGGGAGAGCUGAGAG	chr16:50604953-50605217(+)$1	264	27	46	9.0639
AGGGCCAGAGGCGGCCCUA	chr14:20811398-20811600(-)$1	202	118	137	11.9725
AGUUCCUUUUACGGAAUUU	chr17:73029900-73030181(+)$1	281	181	200	8.9686
GGUCCUGGGCAAAGGAUCA	chr17:7480027-7480274(+)$1	247	205	224	9.7962
GGUCCUGGGCAAAGGAUCA	chr17:7480116-7480359(+)$1	243	116	135	10.4435
AGGACUUUAUGCUGGAGUU	chr11:10822982-10823217(-)$1	235	96	115	8.2768
AGGGCCAGAGGCGGCCCUA	chr14:20811417-20811624(-)$1	207	142	161	11.9725
AGGGCCAGAGGCGGCCCUA	chr14:20811391-20811596(-)$1	205	114	133	11.9725
UUUGGGAAUGACUUCCCAU	chr21:47558559-47558791(-)$1	232	112	131	6.8995
ACCCACACUCUCGUCGUUU	chr2:86276140-86276361(-)$1	221	140	159	8.3541
CCGGGCGGGCAGGCCUCGG	chr21:47559794-47560051(-)$1	257	156	175	9.7893
CUCCACUGUGCUGGUGGAG	chr2:11721927-11722249(+)$1	322	26	45	8.3973
GCUCCAAAAGAAUGGGCCC	chr17:27049545-27049810(+)$1	265	145	164	10.1778
UUUGGGAAUGACUUCCCAU	chr21:47558657-47558894(-)$1	237	215	234	6.8995
AGGGCCAGAGGCGGCCCUA	chr14:20811358-20811562(-)$1	204	80	99	11.9725
UUUCGGGACUGACCUGAAA	chr3:186502554-186502795(+)$1	241	52	71	8.3973
GUUUUGCUUUUCUAUAGCC	chr16:50623237-50623460(+)$1	223	96	115	8.0377
UGAGGACUCUGUUCCUCCC	chr9:35657836-35658044(-)$1	208	65	84	9.7443
AGGGCCAGAGGCGGCCCUA	chr14:20811366-20811573(-)$1	207	91	110	11.9725
AGGGCCAGAGGCGGCCCUA	chr14:20811384-20811591(-)$1	207	109	128	11.9725
AGGGCCAGAGGCGGCCCUA	chr14:20811362-20811566(-)$1	204	84	103	11.9725
AGGGCCAGAGGCGGCCCUA	chr14:20811400-20811612(-)$1	212	130	149	11.9725
GGGGAAGGCAAGGCUUUUU	chr16:28883235-28883471(+)$1	236	194	213	8.2768
UGAGGACUCUGUUCCUCCC	chr9:35657824-35658033(-)$1	209	54	73	9.7443
ggacucagguugccugggu	chr5:138066716-138067009(+)$1	293	141	160	8.2768
AGGGCCAGAGGCGGCCCUA	chr14:20811424-20811649(-)$1	225	167	186	11.9725
GGUCCUGGGCAAAGGAUCA	chr17:7480112-7480316(+)$1	204	120	139	9.7962

#DB
((((((......)))))))	chr14:20811347-20811558(-)$1	1	76	95	11.9725
.((((((.....)))))).	chr9:35657833-35658036(-)$1	1	33	52	7.5643
.(((((((....)))))))	chr9:35657813-35658022(-)$1	1	179	198	7.7400
((.(((......))).))(	chr17:76187174-76187455(+)$1	1	142	161	9.1201
((((((......)))))))	chr14:20811343-20811547(-)$1	1	65	84	11.9725
(((((.(((...))).)))	chr11:10529788-10530052(-)$1	1	161	180	7.4465
..((((((....)))))).	chr21:47558638-47558850(-)$1	1	171	190	6.8995
((((((......)))))))	chr14:20811381-20811584(-)$1	1	102	121	11.9725
((((((......)))))))	chr14:20811373-20811575(-)$1	1	93	112	11.9725
.(((((......)))))..	chr9:35657822-35658024(-)$1	1	45	64	9.7443
(((.((......)).))))	chr17:8076801-8077006(-)$1	1	35	54	8.4540
.(((((......)))))..	chr9:35657873-35658105(-)$1	1	126	145	9.7443
((((((......)))))))	chr14:20811375-20811581(-)$1	1	99	118	11.9725
..((((((....)))))).	chr21:47558591-47558838(-)$1	1	159	178	6.8995
.(((((......)))))..	chr9:35657852-35658060(-)$1	1	81	100	9.7443
.(((((......)))))..	chr9:35657844-35658050(-)$1	1	71	90	9.7443
.(((((......)))))..	chr9:35657860-35658069(-)$1	1	90	109	9.7443
.(((((......)))))..	chr9:35657869-35658073(-)$1	1	94	113	9.7443
((((((......)))))))	chr14:20811412-20811617(-)$1	1	135	154	11.9725
.((((((.....)))))).	chr9:35657850-35658052(-)$1	1	49	68	7.5643
((..((......)).))))	chr16:50604953-50605217(+)$1	1	27	46	9.0639
((((((......)))))))	chr14:20811398-20811600(-)$1	1	118	137	11.9725
((((((......)))).))	chr17:73029900-73030181(+)$1	1	181	200	8.9686
((((((......)))))).	chr17:7480027-7480274(+)$1	1	205	224	9.7962
((((((......))))))(	chr17:7480116-7480359(+)$1	1	116	135	10.4435
(((((((((...)))))))	chr11:10822982-10823217(-)$1	1	96	115	8.2768
((((((......)))))))	chr14:20811417-20811624(-)$1	1	142	161	11.9725
((((((......)))))))	chr14:20811391-20811596(-)$1	1	114	133	11.9725
..((((((....)))))).	chr21:47558559-47558791(-)$1	1	112	131	6.8995
....((......))..)))	chr2:86276140-86276361(-)$1	1	140	159	8.3541
((((((......))).)))	chr21:47559794-47560051(-)$1	1	156	175	9.7893
(((((((.....)))))))	chr2:11721927-11722249(+)$1	1	26	45	8.3973
((.(((......)))))))	chr17:27049545-27049810(+)$1	1	145	164	10.1778
..((((((....)))))).	chr21:47558657-47558894(-)$1	1	215	234	6.8995
((((((......)))))))	chr14:20811358-20811562(-)$1	1	80	99	11.9725
(((((((.....)))))))	chr3:186502554-186502795(+)$1	1	52	71	8.3973
(((.((......)).))))	chr16:50623237-50623460(+)$1	1	96	115	8.0377
.(((((......)))))..	chr9:35657836-35658044(-)$1	1	65	84	9.7443
((((((......)))))))	chr14:20811366-20811573(-)$1	1	91	110	11.9725
((((((......)))))))	chr14:20811384-20811591(-)$1	1	109	128	11.9725
((((((......)))))))	chr14:20811362-20811566(-)$1	1	84	103	11.9725
((((((......)))))))	chr14:20811400-20811612(-)$1	1	130	149	11.9725
(((((((((...)))))))	chr16:28883235-28883471(+)$1	1	194	213	8.2768
.(((((......)))))..	chr9:35657824-35658033(-)$1	1	54	73	9.7443
(((((((((...)))))))	chr5:138066716-138067009(+)$1	1	141	160	8.2768
((((((......)))))))	chr14:20811424-20811649(-)$1	1	167	186	11.9725
((((((......)))))).	chr17:7480112-7480316(+)$1	1	120	139	9.7962

#PSSM
g : 0.38	' : 0.17	! : 0.12	= : 0.08	f : 0.08	[ : 0.02	b : 0.02	h : 0.02	e : 0.02	# : 0.02	c : 0.02	d : 0.02	
g : 0.40	e : 0.19	f : 0.12	! : 0.08	= : 0.08	b : 0.02	h : 0.02	# : 0.02	c : 0.02	d : 0.02	
g : 0.40	f : 0.19	e : 0.17	= : 0.06	[ : 0.04	d : 0.04	h : 0.02	! : 0.02	# : 0.02	c : 0.02	
g : 0.40	f : 0.19	e : 0.17	c : 0.06	= : 0.06	[ : 0.04	! : 0.02	d : 0.02	# : 0.02	
g : 0.40	f : 0.19	e : 0.17	b : 0.08	c : 0.06	= : 0.06	d : 0.02	
g : 0.38	f : 0.19	e : 0.17	b : 0.08	c : 0.06	= : 0.06	[ : 0.02	d : 0.02	
o : 0.72	f : 0.12	g : 0.06	= : 0.06	c : 0.02	
o : 0.72	n : 0.08	f : 0.08	= : 0.06	g : 0.02	c : 0.02	
o : 0.72	m : 0.10	n : 0.08	= : 0.06	c : 0.02	
o : 0.72	m : 0.10	n : 0.08	l : 0.08	
o : 0.72	m : 0.10	n : 0.08	l : 0.08	
o : 0.72	m : 0.10	n : 0.08	l : 0.08	
g : 0.38	f : 0.19	e : 0.17	c : 0.08	b : 0.08	= : 0.06	d : 0.02	
g : 0.38	f : 0.19	e : 0.17	c : 0.08	b : 0.08	= : 0.06	d : 0.02	
g : 0.38	f : 0.19	e : 0.17	c : 0.08	] : 0.06	= : 0.06	d : 0.02	2 : 0.02	
g : 0.38	f : 0.21	e : 0.19	] : 0.06	= : 0.06	d : 0.04	h : 0.02	2 : 0.02	
g : 0.40	f : 0.21	e : 0.21	= : 0.06	b : 0.02	h : 0.02	] : 0.02	c : 0.02	d : 0.02	
g : 0.40	f : 0.21	8 : 0.17	= : 0.08	e : 0.04	b : 0.02	h : 0.02	c : 0.02	d : 0.02	
g : 0.40	8 : 0.17	] : 0.12	= : 0.10	e : 0.04	: : 0.04	d : 0.04	h : 0.02	c : 0.02	f : 0.02	

#score	459.0842767772997
#seq	47
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_transcript_m3_run2.txt

#BEAR
b[eeeeeqqqqqqqqeeee	chrX:153588499-153588717(-)$1	218	70	89	14.0814
dd!!cccqqqqqqqqccc]	chr17:57724757-57724978(+)$1	221	15	34	14.8656
===ddddqqqqqqqqdddd	chr1:19441914-19442157(-)$1	243	76	95	15.8626
ddd!!bbqqqqqqqqbb]d	chr2:96967203-96967447(-)$1	244	129	148	13.1714
dd:ddddqqqqqqqqdddd	chr12:6701458-6701706(-)$1	248	78	97	14.6782
"""ddddqqqqqqqqdddd	chr1:19491642-19491848(-)$1	206	89	108	16.3554
!bb[cccqqqqqqqqcccb	chrX:153586741-153586982(-)$1	241	61	80	14.2323
ggggcccqqqqqqqqccc]	chrX:39923616-39923883(-)$1	267	207	226	14.6121
gggggggqqqqqqqqgggg	chr8:48719598-48719815(-)$1	217	104	123	13.7258
ccc[cccqqqqqqqqcccc	chr17:38557004-38557244(-)$1	240	53	72	14.7559
"""ddddqqqqqqqqdddd	chr18:29437507-29437935(-)$1	428	94	113	16.3554
"""ddddqqqqqqqqdddd	chr16:9016971-9017291(-)$1	320	285	304	16.3554
cccddddqqqqqqqqdddd	chr12:64823797-64824021(+)$1	224	167	186	15.6752
c!!ddddqqqqqqqqdddd	chrX:153219913-153220261(-)$1	348	53	72	16.1884
dddd[bbqqqqqqqqbb]d	chr3:184046322-184046643(+)$1	321	95	114	13.1895
cc!!cccqqqqqqqqcccc	chr17:1577051-1577260(-)$1	209	100	119	15.0494
cc[ddddqqqqqqqqdddd	chr16:58571985-58572239(-)$1	254	44	63	15.8648
ccc[cccqqqqqqqqcccc	chr17:38557080-38557338(-)$1	258	147	166	14.7559
dddddddqqqqqqqqdddd	chr17:57758946-57759209(+)$1	263	101	120	15.4101
cccddddqqqqqqqqdddd	chr11:62290069-62290326(-)$1	257	86	105	15.6752
####cccqqqqqqqqccc4	chr5:154179187-154179419(+)$1	232	73	92	15.2133
gg####aqqqqqqqqa333	chr12:57036437-57036690(-)$1	253	183	202	13.6602
eeeddddqqqqqqqqdddd	chr17:1581737-1581974(-)$1	237	78	97	15.3310
cc[ddddqqqqqqqqdddd	chr2:15601786-15602015(-)$1	229	183	202	15.8648
dd[ddddqqqqqqqqdddd	chrX:41027318-41027568(+)$1	250	135	154	15.6871
"""ddddqqqqqqqqdddd	chrX:53573640-53573884(-)$1	244	69	88	16.3554
gbb[cccqqqqqqqqccc]	chrX:123184870-123185114(+)$1	244	25	44	14.3315
f[eeeeeqqqqqqqqeeee	chr1:27105638-27105944(+)$1	306	262	281	14.1475
gggggggqqqqqqqqgggg	chrX:153588805-153589040(-)$1	235	40	59	13.7258
$$eeeeeqqqqqqqqeeee	chr9:35717530-35717776(-)$1	246	130	149	14.1747
FFFddddqqqqqqqqdddd	chrX:53615241-53615469(-)$1	228	76	95	14.1435
c[eeeeeqqqqqqqqeeee	chrX:123185064-123185275(+)$1	211	25	44	14.3341
b[eeeeeqqqqqqqqeeee	chr12:406158-406467(-)$1	309	85	104	14.0814
ddeeeeeqqqqqqqqeeee	chr17:78302063-78302368(+)$1	305	95	114	13.9876
ddddcccqqqqqqqqccc]	chr17:26947950-26948207(-)$1	257	181	200	14.5853
!!eeeeeqqqqqqqqeeee	chr5:176683926-176684252(+)$1	326	251	270	14.6081
!!a[cccqqqqqqqqccc]	chrX:153588258-153588467(-)$1	209	143	162	15.2461
ebb[cccqqqqqqqqcccb	chr5:154179049-154179285(+)$1	236	200	219	13.8951
gggddddqqqqqqqqdddd	chr1:23403628-23403902(+)$1	274	19	38	15.6674
[bb[cccqqqqqqqqcccb	chr16:58568074-58568366(-)$1	292	214	233	14.1408
dddddddqqqqqqqqdddd	chr14:102493706-102493974(+)$1	268	154	173	15.4101
!!eeeeeqqqqqqqqeeee	chr2:183826875-183827106(-)$1	231	110	129	14.6081
$$$ddddqqqqqqqqdddd	chr3:184040092-184040336(+)$1	244	191	210	15.7217
e::ddddqqqqqqqqdddd	chr1:19524065-19524308(-)$1	243	147	166	13.8511
####cccqqqqqqqqccc3	chr1:220151787-220151990(-)$1	203	143	162	15.1828
cccddddqqqqqqqqdddd	chr21:38528855-38529151(+)$1	296	264	283	15.6752
bb[ddddqqqqqqqqdddd	chr1:227216580-227216921(-)$1	341	284	303	15.4013
=======qqqqqqqq====	chr15:91017195-91017451(+)$1	256	70	89	14.1901
$$$$cccqqqqqqqqccc7	chr8:48715821-48716052(-)$1	231	42	61	13.9385
$$$ddddqqqqqqqqdddd	chr1:40701666-40701942(+)$1	276	159	178	15.7217
!ccc[bbqqqqqqqqbb]c	chr10:71129175-71129467(+)$1	292	66	85	13.2108
!!ccc[aqqqqqqqqaccc	chr1:29070007-29070304(+)$1	297	92	111	14.6451
dd[ddddqqqqqqqqdddd	chr16:18851023-18851351(-)$1	328	47	66	15.6871
ddddcccqqqqqqqqccc]	chr1:19441211-19441538(-)$1	327	248	267	14.5853
b!!ddddqqqqqqqqdddd	chr2:96966635-96966883(-)$1	248	13	32	15.9357
"""ddddqqqqqqqqdddd	chr1:19491648-19491873(-)$1	225	114	133	16.3554
g"""cccqqqqqqqqccc3	chr17:45748031-45748298(+)$1	267	227	246	15.1606
c[eeeeeqqqqqqqqeeee	chrX:153588103-153588322(-)$1	219	188	207	14.3341
[ddddbbqqqqqqqqbb]d	chr21:34926155-34926432(+)$1	277	176	195	13.6451
eeeddddqqqqqqqqdddd	chrX:153216304-153216548(-)$1	244	82	101	15.3310
gggg!!aqqqqqqqqa22g	chr12:6716408-6716648(-)$1	240	110	129	13.2491

#otherMatches

#Seq PSSM
GGCCACCGCUGGGGAGGUG	chrX:153588499-153588717(-)$1	218	70	89	14.0814
CAGAUUUUUAACAUUGAAA	chr17:57724757-57724978(+)$1	221	15	34	14.8656
CAGAGGUGAAGAUUGACCU	chr1:19441914-19442157(-)$1	243	76	95	15.8626
UGAACCUGGGCAAAAAGAU	chr2:96967203-96967447(-)$1	244	129	148	13.1714
CCGAUGUGUUCAAGAACAU	chr12:6701458-6701706(-)$1	248	78	97	14.6782
CAAACUCUUCCAGCUGAGU	chr1:19491642-19491848(-)$1	206	89	108	16.3554
UGGACGUGGUAGACAACGC	chrX:153586741-153586982(-)$1	241	61	80	14.2323
UCAGGUGACAGCAGCCACA	chrX:39923616-39923883(-)$1	267	207	226	14.6121
GUGCCCGGAAGCAGGUGGG	chr8:48719598-48719815(-)$1	217	104	123	13.7258
GGGUGGUCCUGCAAAAUCC	chr17:38557004-38557244(-)$1	240	53	72	14.7559
UGUUUCUAAACGUCCAGAG	chr18:29437507-29437935(-)$1	428	94	113	16.3554
UUUGCUGCCUCUACAUAGC	chr16:9016971-9017291(-)$1	320	285	304	16.3554
UGGAGAAGUUUAAAAUUCU	chr12:64823797-64824021(+)$1	224	167	186	15.6752
GAGCAGCAAAGUCAGGCUG	chrX:153219913-153220261(-)$1	348	53	72	16.1884
GGUUGUAUGAAAUCUUGGA	chr3:184046322-184046643(+)$1	321	95	114	13.1895
UGAUUCAACGUUACCUGAC	chr17:1577051-1577260(-)$1	209	100	119	15.0494
AGUAAAGAUAUUGAACUUU	chr16:58571985-58572239(-)$1	254	44	63	15.8648
GGGUGGUCCUGCAAAAUCC	chr17:38557080-38557338(-)$1	258	147	166	14.7559
AGUUUGCUGAACGUUGCAA	chr17:57758946-57759209(+)$1	263	101	120	15.4101
AGGACCCAAAGUGAAGGGU	chr11:62290069-62290326(-)$1	257	86	105	15.6752
CUCCCAGCUUCUCAACUGC	chr5:154179187-154179419(+)$1	232	73	92	15.2133
GUACUGCUAUUUAUUGAUA	chr12:57036437-57036690(-)$1	253	183	202	13.6602
CAUGUAUCGAUACAAAUAC	chr17:1581737-1581974(-)$1	237	78	97	15.3310
CUCAGCAAGAACUUAUGCU	chr2:15601786-15602015(-)$1	229	183	202	15.8648
AAUUCUCCCUAUGUCGAGG	chrX:41027318-41027568(+)$1	250	135	154	15.6871
CUUACAGUGUUCUGUCUGU	chrX:53573640-53573884(-)$1	244	69	88	16.3554
ACAUCUUGAAUAUUGAAGU	chrX:123184870-123185114(+)$1	244	25	44	14.3315
GACAGUGGCCUGCUGCACU	chr1:27105638-27105944(+)$1	306	262	281	14.1475
UCGGGGCAUAGUGUGGCCU	chrX:153588805-153589040(-)$1	235	40	59	13.7258
AUCCACUUCCCAACUAGUG	chr9:35717530-35717776(-)$1	246	130	149	14.1747
CCAGGCCUCCAAUUUGGCU	chrX:53615241-53615469(-)$1	228	76	95	14.1435
UACAAAUAACUUGUCAUUU	chrX:123185064-123185275(+)$1	211	25	44	14.3341
UUUGUUUCUUCUUCAGGAC	chr12:406158-406467(-)$1	309	85	104	14.0814
AUGUGCUGUGGAGGAAGCA	chr17:78302063-78302368(+)$1	305	95	114	13.9876
AUCUCCUAAAGAAGCAGGA	chr17:26947950-26948207(-)$1	257	181	200	14.5853
CUAAUUGUAAAACCUCAGU	chr5:176683926-176684252(+)$1	326	251	270	14.6081
GACAGGGACCAGAACCCCC	chrX:153588258-153588467(-)$1	209	143	162	15.2461
CAGACUGAUUUCUCCCAGC	chr5:154179049-154179285(+)$1	236	200	219	13.8951
GUUGUACAGAACUAGGUGC	chr1:23403628-23403902(+)$1	274	19	38	15.6674
UGCUAUCACAACCUGGAUG	chr16:58568074-58568366(-)$1	292	214	233	14.1408
ACCCUUCUGGCCAAUGGAG	chr14:102493706-102493974(+)$1	268	154	173	15.4101
UUGGAGAUCGCAGUCUUUC	chr2:183826875-183827106(-)$1	231	110	129	14.6081
GGAGCAGUGGUCAUUCUGC	chr3:184040092-184040336(+)$1	244	191	210	15.7217
AAGGUGCUUCACAGUGCAC	chr1:19524065-19524308(-)$1	243	147	166	13.8511
AUUUGAGUUUAGAUUUUCC	chr1:220151787-220151990(-)$1	203	143	162	15.1828
AGCCCGUUGUUUAAUAUGG	chr21:38528855-38529151(+)$1	296	264	283	15.6752
CAGUGGAUGGCAAUCUUCA	chr1:227216580-227216921(-)$1	341	284	303	15.4013
CAGAGAAAUUUCUUCUUUU	chr15:91017195-91017451(+)$1	256	70	89	14.1901
AGGAGCUGCAUAAAGAGUC	chr8:48715821-48716052(-)$1	231	42	61	13.9385
ACAAGAAGCCUCAGAUUCU	chr1:40701666-40701942(+)$1	276	159	178	15.7217
AUCUGGUGGAAGGAGACGA	chr10:71129175-71129467(+)$1	292	66	85	13.2108
AAGAGACUGGAUGCUGCUU	chr1:29070007-29070304(+)$1	297	92	111	14.6451
AUCUUUUCUUUUUUAAAAA	chr16:18851023-18851351(-)$1	328	47	66	15.6871
GGCCUAGACUCAGGGCUGU	chr1:19441211-19441538(-)$1	327	248	267	14.5853
CGGGGAGGACAUUGGCUCC	chr2:96966635-96966883(-)$1	248	13	32	15.9357
CAAACUCUUCCAGCUGAGU	chr1:19491648-19491873(-)$1	225	114	133	16.3554
GUGGAGGAUAUCUAGCUUA	chr17:45748031-45748298(+)$1	267	227	246	15.1606
CAUGUACAAAGUGGAGUAC	chrX:153588103-153588322(-)$1	219	188	207	14.3341
UUUGCUCUGGAACCUGAUG	chr21:34926155-34926432(+)$1	277	176	195	13.6451
CACUCCUCUUUUCCUAGGA	chrX:153216304-153216548(-)$1	244	82	101	15.3310
CGGCCGCGGCGAGGAGGAG	chr12:6716408-6716648(-)$1	240	110	129	13.2491

#DB
(.(((((........))))	chrX:153588499-153588717(-)$1	1	70	89	14.0814
((..(((........))).	chr17:57724757-57724978(+)$1	1	15	34	14.8656
)))((((........))))	chr1:19441914-19442157(-)$1	1	76	95	15.8626
(((..((........)).)	chr2:96967203-96967447(-)$1	1	129	148	13.1714
)).((((........))))	chr12:6701458-6701706(-)$1	1	78	97	14.6782
...((((........))))	chr1:19491642-19491848(-)$1	1	89	108	16.3554
.((.(((........))))	chrX:153586741-153586982(-)$1	1	61	80	14.2323
(((((((........))).	chrX:39923616-39923883(-)$1	1	207	226	14.6121
(((((((........))))	chr8:48719598-48719815(-)$1	1	104	123	13.7258
(((.(((........))))	chr17:38557004-38557244(-)$1	1	53	72	14.7559
...((((........))))	chr18:29437507-29437935(-)$1	1	94	113	16.3554
...((((........))))	chr16:9016971-9017291(-)$1	1	285	304	16.3554
)))((((........))))	chr12:64823797-64824021(+)$1	1	167	186	15.6752
(..((((........))))	chrX:153219913-153220261(-)$1	1	53	72	16.1884
((((.((........)).)	chr3:184046322-184046643(+)$1	1	95	114	13.1895
((..(((........))))	chr17:1577051-1577260(-)$1	1	100	119	15.0494
((.((((........))))	chr16:58571985-58572239(-)$1	1	44	63	15.8648
(((.(((........))))	chr17:38557080-38557338(-)$1	1	147	166	14.7559
)))((((........))))	chr17:57758946-57759209(+)$1	1	101	120	15.4101
)))((((........))))	chr11:62290069-62290326(-)$1	1	86	105	15.6752
....(((........))).	chr5:154179187-154179419(+)$1	1	73	92	15.2133
((....(........)...	chr12:57036437-57036690(-)$1	1	183	202	13.6602
)))((((........))))	chr17:1581737-1581974(-)$1	1	78	97	15.3310
((.((((........))))	chr2:15601786-15602015(-)$1	1	183	202	15.8648
((.((((........))))	chrX:41027318-41027568(+)$1	1	135	154	15.6871
...((((........))))	chrX:53573640-53573884(-)$1	1	69	88	16.3554
(((.(((........))).	chrX:123184870-123185114(+)$1	1	25	44	14.3315
(.(((((........))))	chr1:27105638-27105944(+)$1	1	262	281	14.1475
(((((((........))))	chrX:153588805-153589040(-)$1	1	40	59	13.7258
..(((((........))))	chr9:35717530-35717776(-)$1	1	130	149	14.1747
(((((((........))))	chrX:53615241-53615469(-)$1	1	76	95	14.1435
(.(((((........))))	chrX:123185064-123185275(+)$1	1	25	44	14.3341
(.(((((........))))	chr12:406158-406467(-)$1	1	85	104	14.0814
(((((((........))))	chr17:78302063-78302368(+)$1	1	95	114	13.9876
(((((((........))).	chr17:26947950-26948207(-)$1	1	181	200	14.5853
..(((((........))))	chr5:176683926-176684252(+)$1	1	251	270	14.6081
..(.(((........))).	chrX:153588258-153588467(-)$1	1	143	162	15.2461
)((.(((........))))	chr5:154179049-154179285(+)$1	1	200	219	13.8951
(((((((........))))	chr1:23403628-23403902(+)$1	1	19	38	15.6674
.((.(((........))))	chr16:58568074-58568366(-)$1	1	214	233	14.1408
(((((((........))))	chr14:102493706-102493974(+)$1	1	154	173	15.4101
..(((((........))))	chr2:183826875-183827106(-)$1	1	110	129	14.6081
...((((........))))	chr3:184040092-184040336(+)$1	1	191	210	15.7217
)..((((........))))	chr1:19524065-19524308(-)$1	1	147	166	13.8511
....(((........))).	chr1:220151787-220151990(-)$1	1	143	162	15.1828
(((((((........))))	chr21:38528855-38529151(+)$1	1	264	283	15.6752
((.((((........))))	chr1:227216580-227216921(-)$1	1	284	303	15.4013
(((((((........))))	chr15:91017195-91017451(+)$1	1	70	89	14.1901
....(((........))).	chr8:48715821-48716052(-)$1	1	42	61	13.9385
...((((........))))	chr1:40701666-40701942(+)$1	1	159	178	15.7217
.(((.((........)).)	chr10:71129175-71129467(+)$1	1	66	85	13.2108
..(((.(........))))	chr1:29070007-29070304(+)$1	1	92	111	14.6451
((.((((........))))	chr16:18851023-18851351(-)$1	1	47	66	15.6871
(((((((........))).	chr1:19441211-19441538(-)$1	1	248	267	14.5853
(..((((........))))	chr2:96966635-96966883(-)$1	1	13	32	15.9357
...((((........))))	chr1:19491648-19491873(-)$1	1	114	133	16.3554
(...(((........))).	chr17:45748031-45748298(+)$1	1	227	246	15.1606
(.(((((........))))	chrX:153588103-153588322(-)$1	1	188	207	14.3341
.((((((........)).)	chr21:34926155-34926432(+)$1	1	176	195	13.6451
)))((((........))))	chrX:153216304-153216548(-)$1	1	82	101	15.3310
((((..(........)..)	chr12:6716408-6716648(-)$1	1	110	129	13.2491

#PSSM
d : 0.18	c : 0.18	g : 0.13	! : 0.09	" : 0.08	b : 0.06	e : 0.06	$ : 0.06	= : 0.03	# : 0.03	[ : 0.03	f : 0.01	F : 0.01	
d : 0.19	c : 0.14	" : 0.09	g : 0.09	! : 0.09	[ : 0.08	b : 0.08	$ : 0.06	= : 0.03	# : 0.03	e : 0.03	F : 0.01	: : 0.01	
e : 0.18	d : 0.11	c : 0.11	" : 0.09	g : 0.08	[ : 0.08	! : 0.06	b : 0.06	# : 0.04	$ : 0.04	= : 0.03	: : 0.03	F : 0.01	a : 0.01	
d : 0.49	e : 0.14	[ : 0.11	g : 0.06	! : 0.04	# : 0.04	c : 0.03	= : 0.01	$ : 0.01	" : 0.01	
d : 0.44	c : 0.27	e : 0.14	! : 0.03	g : 0.03	[ : 0.03	# : 0.01	= : 0.01	
d : 0.42	c : 0.26	e : 0.14	b : 0.06	g : 0.03	# : 0.01	= : 0.01	[ : 0.01	! : 0.01	
d : 0.42	c : 0.26	e : 0.14	b : 0.06	a : 0.04	g : 0.03	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.42	c : 0.26	e : 0.14	b : 0.06	a : 0.04	g : 0.03	= : 0.01	
d : 0.42	c : 0.27	e : 0.14	b : 0.06	g : 0.03	3 : 0.01	= : 0.01	2 : 0.01	
d : 0.42	c : 0.27	e : 0.14	] : 0.06	g : 0.03	3 : 0.01	= : 0.01	2 : 0.01	
d : 0.47	e : 0.14	] : 0.09	c : 0.08	b : 0.04	g : 0.04	3 : 0.04	4 : 0.01	= : 0.01	7 : 0.01	

#score	905.8836715424469
#seq	61
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_CDS_m3_run1.txt

#BEAR
c[ccc!!cccmmmmccc22ccc]c	chr12:58217999-58218248(-)$1	249	151	175	12.5323
[a[bb!!cccmmmmccc22bbacc	chr21:44486372-44486633(-)$1	261	221	245	11.7388
fff$$$$$ccclllccc22fffff	chr1:19200947-19201224(-)$1	277	235	259	10.0097
ff[ccc[aooooooaccc]fffff	chr15:62160034-62160295(-)$1	261	236	260	9.4323
iiiiii[cccmmmmccc]iiiiii	chr22:50356185-50356473(+)$1	288	206	230	12.3599
ffffff!!bbmmmmbbffffffbb	chr20:61439422-61439694(+)$1	272	80	104	9.2783
cc[ccc[ccclllcccccc]ccc]	chr16:448817-449117(+)$1	300	134	158	10.2159
c!!bb!!cccmmmmccc22bbccc	chr9:117027595-117027852(+)$1	257	138	162	11.7508
fffff!!cccnnnnncccffffff	chr17:46053935-46054186(+)$1	251	1	25	9.5076
fffff[ddddmmmmdddd]fffff	chr12:133367758-133368045(-)$1	287	236	260	9.2142
e!!ccc!!ccclllccc]ccceee	chr8:144668911-144669185(-)$1	274	42	66	10.8355
eee!!cccooooooccc]eeeee3	chr17:74308988-74309249(-)$1	261	171	195	8.9870
gggggggcccmmmmccc22ggggg	chr6:31937189-31937434(+)$1	245	205	229	12.1014
cc[ccc[cccmmmmcccccc]ccc	chr16:70711691-70711949(-)$1	258	132	156	11.7588
[eeeee[cccmmmmccceeeee44	chr20:61588627-61588916(+)$1	289	10	34	11.0984
:eeeee[cccmmmmccc]eeeee:	chr4:1806944-1807187(+)$1	243	89	113	9.8330
c!!bb!!cccmmmmccc22bb]cc	chr17:79663706-79663981(+)$1	275	23	47	11.7994
eeeebb[cccmmmmccc]bb]eee	chr6:170065497-170065786(-)$1	289	183	207	11.0901
ccc[ggggggglllggggggg333	chr2:42513257-42513539(+)$1	282	24	48	8.1445
!!dddd[cccmmmmccc]ddddcc	chr9:74313008-74313266(-)$1	258	13	37	10.9609
!!dddd[cccmmmmccc]dddd]f	chr14:39745983-39746279(+)$1	296	150	174	11.0501
"eeeee[cccmmmmccc]eeeee]	chr17:80007771-80008038(-)$1	267	62	86	11.7589
ffffff[cccmmmmccc]ffffff	chr3:49160359-49160634(-)$1	275	138	162	12.9151
fffff[cccnnnnnccc]ffffff	chr12:123465988-123466239(+)$1	251	136	160	9.8436
gggggg[cccmmmmccc]gggggg	chr9:135925970-135926276(+)$1	306	145	169	12.6828
[ffffff[bbmmmmbbffffffcc	chr16:15128169-15128414(+)$1	245	97	121	9.1899
i!!ccc!!bbmmmmbb22ccc444	chr9:124543602-124543862(+)$1	260	64	88	9.6781
fff[ccc[ccclllccc]ccc]ff	chr6:158994218-158994564(+)$1	346	151	175	10.7837
fffff[cccnnnnnccc]ffffff	chr19:35500184-35500428(+)$1	244	164	188	9.8436
eee[ccc[ccclllccc]ccc]ee	chr16:89805438-89805698(+)$1	260	220	244	10.2649
ffffffcccnnnnnccc]ffffff	chr1:12639333-12639595(-)$1	262	194	218	9.5931
dgggggggbbmmmmbb4444gggg	chr16:710401-710679(+)$1	278	22	46	9.2060
bb[ccc[cccmmmmccc]ccc]bb	chr2:70451631-70451920(-)$1	289	215	239	11.5796
[ccca!!cccmmmmccc22a]ccc	chr17:79526302-79526548(-)$1	246	199	223	12.2322
eea[ccccccmmmmccc]ccc22a	chr16:27499855-27500106(-)$1	251	136	160	11.1290
gggggg[ccclllccc22gggggg	chr20:34327304-34327629(-)$1	325	263	287	10.3833
[ffffff[bbmmmmbb]ffffff3	chr19:13216077-13216375(-)$1	298	19	43	9.2873
ffffff[cccmmmmccc]ffffff	chr10:97143930-97144202(-)$1	272	192	216	12.9151
iiiiii[cccmmmmccc]iiiiii	chr3:48460672-48460925(-)$1	253	205	229	12.3599
eeeee!!cccmmmmccc22eeeee	chr16:31195031-31195333(+)$1	302	162	186	11.9581
ffffff[cccmmmmccc333ffff	chr8:145668069-145668335(-)$1	266	78	102	12.9127
cccccc[cccmmmmccccccFFFF	chr14:24108257-24108488(+)$1	231	113	137	10.2208
fffff"""ccclllccc22fffff	chr12:56629194-56629446(+)$1	252	135	159	11.3479
ff[bb[a[aammmma]a]a]bb]f	chr3:48664377-48664627(-)$1	250	13	37	9.6481
ffffff[ccclllcccffffff22	chr3:48457738-48457984(-)$1	246	123	147	9.7403
iiiiiiii[ammmma]iiiiiiii	chr3:48453316-48453568(-)$1	252	141	165	9.4153
[iiiiiiiiimmmmiiiiiiiii2	chr17:62498083-62498344(-)$1	261	66	90	9.4781
bb[ddddcccmmmmccc]ddddbb	chr19:45573131-45573433(+)$1	302	241	265	9.4526
ccc####cccmmmmccc22ccc]d	chr20:60899504-60899777(-)$1	273	239	263	11.6861
eeeee!!cccmmmmccceeeeeee	chr3:49051492-49051776(+)$1	284	94	118	11.1590
eee!!bb[ccclllccc]bbeeee	chr2:63206173-63206434(+)$1	261	188	212	8.9001
:eeeee[cccmmmmccc]eeeee:	chr18:8378103-8378367(+)$1	264	204	228	9.8330
fffff!!ddddlllddddffffff	chr3:69093630-69093871(-)$1	241	191	215	8.3773
dd[bb!!cccmmmmccc22bbddd	chr16:89961303-89961560(+)$1	257	213	237	10.9132

#otherMatches

#Seq PSSM
UGUGCUCAAGAGGCCUUAUGUGGA	chr12:58217999-58218248(-)$1	249	151	175	12.5323
AGCGCGACGGGACGCUGAAGCCCG	chr21:44486372-44486633(-)$1	261	221	245	11.7388
GCCAGCAGCCCUUUGGGGGGGCCC	chr1:19200947-19201224(-)$1	277	235	259	10.0097
ACUGUGUGUGAAUUCCAUUGUCAA	chr15:62160034-62160295(-)$1	261	236	260	9.4323
CUCGGCCACCGUGUGGUCGCUGGG	chr22:50356185-50356473(+)$1	288	206	230	12.3599
GGAGGUUUGCAGAUGCGCCUCCCC	chr20:61439422-61439694(+)$1	272	80	104	9.2783
GUGAGGUGGCAGUGCCUCUGACCU	chr16:448817-449117(+)$1	300	134	158	10.2159
CAAGGGCCUCCCAGGAGAACCGGU	chr9:117027595-117027852(+)$1	257	138	162	11.7508
ccaggcuggucucaaacuccuggg	chr17:46053935-46054186(+)$1	251	1	25	9.5076
AACAAAAGGUAAAAAUCUGUUGUU	chr12:133367758-133368045(-)$1	287	236	260	9.2142
UGUGGAGAACCGCUGGUGUCUGAA	chr8:144668911-144669185(-)$1	274	42	66	10.8355
UGGAGAGUUUUGUUGCUGCCGCGG	chr17:74308988-74309249(-)$1	261	171	195	8.9870
GCCUGGUAGGAGAGCCUGUGCUGG	chr6:31937189-31937434(+)$1	245	205	229	12.1014
UCGCUGCUUCCUCAGAAUGGAGAG	chr16:70711691-70711949(-)$1	258	132	156	11.7588
UCCUCACGAGGCAGCUCUGGGGUC	chr20:61588627-61588916(+)$1	289	10	34	11.0984
AGAGUGGGCGAGUUUGCACACUCA	chr4:1806944-1807187(+)$1	243	89	113	9.8330
GUCCAGAUGCGCGCGCAGAUGCCC	chr17:79663706-79663981(+)$1	275	23	47	11.7994
CACCGGGUGUGCUGACGGCCAGGU	chr6:170065497-170065786(-)$1	289	183	207	11.0901
UAAAUCUAGUAAUUUAUUAGAAGC	chr2:42513257-42513539(+)$1	282	24	48	8.1445
AUUUUGUAAUUUAUGUUUUAAGGA	chr9:74313008-74313266(-)$1	258	13	37	10.9609
GAAGGUUGUGGCAGCACUGCCUGA	chr14:39745983-39746279(+)$1	296	150	174	11.0501
GGGGCAGCUUAAGAAAGAUGCCUG	chr17:80007771-80008038(-)$1	267	62	86	11.7589
GUGCCUGGCAGGUGUGUGGGGCAC	chr3:49160359-49160634(-)$1	275	138	162	12.9151
UUCUCCCUGCAUCACAGAGAGAAG	chr12:123465988-123466239(+)$1	251	136	160	9.8436
GGUGCCUGGGAUGGCCUUGGUGCU	chr9:135925970-135926276(+)$1	306	145	169	12.6828
AGCCGCCGUGAGGCCAGGUGGCCC	chr16:15128169-15128414(+)$1	245	97	121	9.1899
GAUGGGCUUGUUCUCACACCCUCC	chr9:124543602-124543862(+)$1	260	64	88	9.6781
GAGGGGUGUUGCUGCAGGGCCGCU	chr6:158994218-158994564(+)$1	346	151	175	10.7837
UAAGUGUCUGGGCAAGGGGCUUGC	chr19:35500184-35500428(+)$1	244	164	188	9.8436
UCCCUGAUGGCCGCGUCUUCAUGG	chr16:89805438-89805698(+)$1	260	220	244	10.2649
GUCCAUGGGAAGAGCCUAAUGGAC	chr1:12639333-12639595(-)$1	262	194	218	9.5931
CCUGUGCCCCUCCUGGCCCUGGCA	chr16:710401-710679(+)$1	278	22	46	9.2060
UCUCCUUUUUCAACAAAUGGGUGA	chr2:70451631-70451920(-)$1	289	215	239	11.5796
ACUGCACGUUCAUGAACCAGCCAG	chr17:79526302-79526548(-)$1	246	199	223	12.2322
UGCUUGUCUCACAGGAGAACACUG	chr16:27499855-27500106(-)$1	251	136	160	11.1290
GUGGCUGGCUGCUAGCAUGGCCAC	chr20:34327304-34327629(-)$1	325	263	287	10.3833
CGCUUCCAGGCUAACCCGGAGGCC	chr19:13216077-13216375(-)$1	298	19	43	9.2873
UCAUUUUCUGAAGACAGUAAGUGA	chr10:97143930-97144202(-)$1	272	192	216	12.9151
CCACGUUGAUGCCGGUCCAUGUGG	chr3:48460672-48460925(-)$1	253	205	229	12.3599
AGUCAACUCCCCAGGGAUAUGGCU	chr16:31195031-31195333(+)$1	302	162	186	11.9581
AUGGGGCCCAAAGCUGGAAACCCC	chr8:145668069-145668335(-)$1	266	78	102	12.9127
UCCAUCUCUGCAUUCAGGAUCGGC	chr14:24108257-24108488(+)$1	231	113	137	10.2208
CUUCUCUCUGUCAGGCACAAGAAG	chr12:56629194-56629446(+)$1	252	135	159	11.3479
GUUUGUGUCCUUAUGUGUCCCAUG	chr3:48664377-48664627(-)$1	250	13	37	9.6481
GCCUCGUGUGCAUCACCGGGGCCA	chr3:48457738-48457984(-)$1	246	123	147	9.7403
CUCUCCUAGGACUCCGUAGGGGAG	chr3:48453316-48453568(-)$1	252	141	165	9.4153
UAAAUAUUUCAAAUGAAGUAUUUU	chr17:62498083-62498344(-)$1	261	66	90	9.4781
CCACCAGGCUGCAGGGCUCUGGGG	chr19:45573131-45573433(+)$1	302	241	265	9.4526
GGACACUCAGACCGCUGCCUCCCU	chr20:60899504-60899777(-)$1	273	239	263	11.6861
UGCAGAUGCUCCCAGGCUUGCAGG	chr3:49051492-49051776(+)$1	284	94	118	11.1590
GCUCGUCAGCUAAUAGCAGAAGCU	chr2:63206173-63206434(+)$1	261	188	212	8.9001
UGUGGGGACACCUCUGUGCCUGCU	chr18:8378103-8378367(+)$1	264	204	228	9.8330
AAAGCACUUCUAGAAGAAGCUUUU	chr3:69093630-69093871(-)$1	241	191	215	8.3773
GGAUCAGGAGAUGGCUCGAGACCU	chr16:89961303-89961560(+)$1	257	213	237	10.9132

#DB
(.(((..(((....)))..))).)	chr12:58217999-58218248(-)$1	1	151	175	12.5323
.(.((..(((....)))..)))))	chr21:44486372-44486633(-)$1	1	221	245	11.7388
(((.....(((...)))..)))))	chr1:19200947-19201224(-)$1	1	235	259	10.0097
((.(((.(......)))).)))))	chr15:62160034-62160295(-)$1	1	236	260	9.4323
((((((.(((....))).))))))	chr22:50356185-50356473(+)$1	1	206	230	12.3599
((((((..((....))))))))))	chr20:61439422-61439694(+)$1	1	80	104	9.2783
((.(((.(((...)))))).))).	chr16:448817-449117(+)$1	1	134	158	10.2159
(..((..(((....)))..)))))	chr9:117027595-117027852(+)$1	1	138	162	11.7508
(((((..(((.....)))))))))	chr17:46053935-46054186(+)$1	1	1	25	9.5076
(((((.((((....)))).)))))	chr12:133367758-133368045(-)$1	1	236	260	9.2142
(..(((..(((...))).))))))	chr8:144668911-144669185(-)$1	1	42	66	10.8355
(((..(((......))).))))).	chr17:74308988-74309249(-)$1	1	171	195	8.9870
((((((((((....)))..)))))	chr6:31937189-31937434(+)$1	1	205	229	12.1014
((.(((.(((....)))))).)))	chr16:70711691-70711949(-)$1	1	132	156	11.7588
.(((((.(((....))))))))..	chr20:61588627-61588916(+)$1	1	10	34	11.0984
.(((((.(((....))).))))).	chr4:1806944-1807187(+)$1	1	89	113	9.8330
(..((..(((....)))..)).))	chr17:79663706-79663981(+)$1	1	23	47	11.7994
((((((.(((....))).)).)))	chr6:170065497-170065786(-)$1	1	183	207	11.0901
(((.(((((((...)))))))...	chr2:42513257-42513539(+)$1	1	24	48	8.1445
..((((.(((....))).))))))	chr9:74313008-74313266(-)$1	1	13	37	10.9609
..((((.(((....))).)))).)	chr14:39745983-39746279(+)$1	1	150	174	11.0501
.(((((.(((....))).))))).	chr17:80007771-80008038(-)$1	1	62	86	11.7589
((((((.(((....))).))))))	chr3:49160359-49160634(-)$1	1	138	162	12.9151
(((((.(((.....))).))))))	chr12:123465988-123466239(+)$1	1	136	160	9.8436
((((((.(((....))).))))))	chr9:135925970-135926276(+)$1	1	145	169	12.6828
.((((((.((....))))))))))	chr16:15128169-15128414(+)$1	1	97	121	9.1899
(..(((..((....))..)))...	chr9:124543602-124543862(+)$1	1	64	88	9.6781
(((.(((.(((...))).))).))	chr6:158994218-158994564(+)$1	1	151	175	10.7837
(((((.(((.....))).))))))	chr19:35500184-35500428(+)$1	1	164	188	9.8436
(((.(((.(((...))).))).))	chr16:89805438-89805698(+)$1	1	220	244	10.2649
(((((((((.....))).))))))	chr1:12639333-12639595(-)$1	1	194	218	9.5931
((((((((((....))....))))	chr16:710401-710679(+)$1	1	22	46	9.2060
((.(((.(((....))).))).))	chr2:70451631-70451920(-)$1	1	215	239	11.5796
.((((..(((....)))..).)))	chr17:79526302-79526548(-)$1	1	199	223	12.2322
(((.((((((....))).)))..)	chr16:27499855-27500106(-)$1	1	136	160	11.1290
((((((.(((...)))..))))))	chr20:34327304-34327629(-)$1	1	263	287	10.3833
.((((((.((....)).)))))).	chr19:13216077-13216375(-)$1	1	19	43	9.2873
((((((.(((....))).))))))	chr10:97143930-97144202(-)$1	1	192	216	12.9151
((((((.(((....))).))))))	chr3:48460672-48460925(-)$1	1	205	229	12.3599
(((((..(((....)))..)))))	chr16:31195031-31195333(+)$1	1	162	186	11.9581
((((((.(((....)))...))))	chr8:145668069-145668335(-)$1	1	78	102	12.9127
)))(((.(((....))))))((((	chr14:24108257-24108488(+)$1	1	113	137	10.2208
(((((...(((...)))..)))))	chr12:56629194-56629446(+)$1	1	135	159	11.3479
((.((.(.((....).).).)).)	chr3:48664377-48664627(-)$1	1	13	37	9.6481
((((((.(((...)))))))))..	chr3:48457738-48457984(-)$1	1	123	147	9.7403
((((((((.(....).))))))))	chr3:48453316-48453568(-)$1	1	141	165	9.4153
.(((((((((....))))))))).	chr17:62498083-62498344(-)$1	1	66	90	9.4781
((.(((((((....))).))))))	chr19:45573131-45573433(+)$1	1	241	265	9.4526
(((....(((....)))..))).)	chr20:60899504-60899777(-)$1	1	239	263	11.6861
(((((..(((....))))))))))	chr3:49051492-49051776(+)$1	1	94	118	11.1590
(((..((.(((...))).))))))	chr2:63206173-63206434(+)$1	1	188	212	8.9001
.(((((.(((....))).))))).	chr18:8378103-8378367(+)$1	1	204	228	9.8330
(((((..((((...))))))))))	chr3:69093630-69093871(-)$1	1	191	215	8.3773
((.((..(((....)))..)))))	chr16:89961303-89961560(+)$1	1	213	237	10.9132

#PSSM
f : 0.29	c : 0.14	e : 0.14	[ : 0.11	i : 0.07	g : 0.05	: : 0.03	! : 0.03	d : 0.03	b : 0.03	" : 0.01	
f : 0.33	e : 0.20	c : 0.11	! : 0.11	i : 0.07	g : 0.07	b : 0.03	[ : 0.01	a : 0.01	d : 0.01	
f : 0.29	e : 0.18	[ : 0.14	c : 0.09	i : 0.07	! : 0.07	g : 0.07	d : 0.03	a : 0.01	
f : 0.25	c : 0.16	e : 0.12	b : 0.09	i : 0.07	g : 0.07	[ : 0.07	d : 0.05	! : 0.03	$ : 0.01	# : 0.01	
f : 0.25	c : 0.20	b : 0.11	e : 0.11	g : 0.09	i : 0.07	d : 0.05	! : 0.03	$ : 0.01	a : 0.01	# : 0.01	
c : 0.20	! : 0.18	f : 0.14	g : 0.09	i : 0.07	[ : 0.07	e : 0.07	d : 0.05	b : 0.03	$ : 0.01	" : 0.01	# : 0.01	
[ : 0.37	! : 0.24	c : 0.12	g : 0.05	d : 0.03	f : 0.03	i : 0.03	$ : 0.01	" : 0.01	a : 0.01	# : 0.01	b : 0.01	
c : 0.66	[ : 0.11	! : 0.05	d : 0.03	g : 0.03	i : 0.03	$ : 0.01	a : 0.01	" : 0.01	
c : 0.75	b : 0.09	o : 0.03	d : 0.03	g : 0.01	a : 0.01	[ : 0.01	i : 0.01	
c : 0.70	b : 0.09	n : 0.05	o : 0.03	d : 0.03	a : 0.03	g : 0.01	i : 0.01	
m : 0.68	c : 0.11	n : 0.07	l : 0.05	o : 0.03	g : 0.01	d : 0.01	
m : 0.68	l : 0.20	n : 0.07	o : 0.03	
m : 0.68	l : 0.20	n : 0.07	o : 0.03	
m : 0.68	l : 0.14	n : 0.07	c : 0.05	o : 0.03	
c : 0.75	b : 0.09	a : 0.05	d : 0.03	n : 0.01	g : 0.01	i : 0.01	
c : 0.79	b : 0.09	d : 0.03	] : 0.03	g : 0.01	i : 0.01	
c : 0.75	f : 0.05	d : 0.03	2 : 0.03	i : 0.03	g : 0.01	4 : 0.01	] : 0.01	a : 0.01	
] : 0.42	2 : 0.24	c : 0.09	f : 0.07	d : 0.03	e : 0.03	i : 0.03	g : 0.01	4 : 0.01	3 : 0.01	
2 : 0.20	f : 0.20	c : 0.16	e : 0.11	i : 0.07	g : 0.05	d : 0.05	] : 0.03	b : 0.03	4 : 0.01	3 : 0.01	a : 0.01	
f : 0.27	c : 0.18	e : 0.12	b : 0.11	i : 0.07	g : 0.07	d : 0.05	] : 0.03	4 : 0.01	a : 0.01	3 : 0.01	
f : 0.29	c : 0.16	e : 0.14	b : 0.09	g : 0.09	i : 0.07	] : 0.05	d : 0.05	F : 0.01	
f : 0.29	e : 0.18	c : 0.11	i : 0.07	g : 0.07	] : 0.07	d : 0.07	a : 0.01	3 : 0.01	4 : 0.01	2 : 0.01	F : 0.01	b : 0.01	
f : 0.25	e : 0.18	c : 0.14	] : 0.07	i : 0.07	g : 0.07	b : 0.05	4 : 0.03	2 : 0.03	3 : 0.01	F : 0.01	d : 0.01	
f : 0.27	c : 0.14	e : 0.11	g : 0.07	i : 0.05	b : 0.05	3 : 0.05	] : 0.03	4 : 0.03	: : 0.03	2 : 0.03	d : 0.03	a : 0.01	F : 0.01	

#score	574.3901035171148
#seq	54
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_UTR_m1_run2.txt

#BEAR
==========[ccclllccc333=========	chr11:75111377-75111612(+)$1	235	18	50	12.6119
[hhhhhhhh"""ccclllccc333hhhhhhhh	chrX:152954103-152954376(+)$1	273	7	39	11.2642
dddbb[ccceeeeennnnneeeee]ccc]bb]	chr20:1165127-1165384(-)$1	257	159	191	10.5684
e[bb"""gggggggnnnnnggggggg333bb]	chr22:20068093-20068356(+)$1	263	200	232	11.6838
[iiiiiiiii[cccnnnnnccciiiiiiiii]	chr22:21983344-21983575(-)$1	231	140	172	15.7962
a[dddd"""eeeeennnnneeeee]dddd]ag	chr19:54971699-54971951(+)$1	252	45	77	10.7840
eee!!dddd!!ccclllcccdddd22eeeee]	chr19:13250242-13250501(+)$1	259	194	226	10.1002
ccbb:ggggggg[aooooooa333ggggggg:	chr22:19710374-19710612(+)$1	238	12	44	8.9448
Deeeee[bb[ddddnnnnndddd]bbeeeeeg	chr17:8076672-8076904(-)$1	232	64	96	11.9613
[ccciiiiiiiii[bblllbbiiiiiiiii22	chr6:167369854-167370160(-)$1	306	36	68	10.0872
b[ggggggg[ccc[allla]ccc]ggggggg]	chr12:123997699-123998012(-)$1	313	177	209	12.3975
###dddd!!ccc[annnnna]ccc22dddd33	chr15:70389958-70390288(-)$1	330	234	266	11.3772
[eeeeeiiiiiiiiimmmmiiiiiiiii>>>>	chr12:123998577-123998824(-)$1	247	63	95	8.3405
Deeeee[bb[ddddnnnnndddd]bbeeeeeg	chr17:8076726-8076943(-)$1	217	103	135	11.9613
::ggggggg[ddddnnnnndddd]ggggggg:	chr22:20004105-20004395(-)$1	290	217	249	10.8831
==========[ccclllccc333=========	chr11:75111333-75111576(+)$1	243	62	94	12.6119
iiiiiiiii!!ccclllccc22iiiiiiiii]	chr7:5569465-5569798(-)$1	333	260	292	12.3491
hhhhh[dddd[cccnnnnnccc]dddd]hhhh	chr11:122929976-122930183(-)$1	207	149	181	13.1583
Deeeee[bb[ddddnnnnndddd]bbeeeeeg	chr17:8076746-8076968(-)$1	222	128	160	11.9613
ffffffffffcccooooooccc333ffffff]	chr19:1416432-1416664(+)$1	232	101	133	9.3897
hhhhh[dddd[cccnnnnnccc]dddd]hhhh	chr11:122929971-122930176(-)$1	205	142	174	13.1583
hhhhhhhccc[cccnnnnnccc22ccc]hhhh	chr16:89367059-89367310(-)$1	251	108	140	13.8003
!!hhhhhhhh[cccnnnnnccchhhhhhhhdd	chr2:97525789-97526033(-)$1	244	209	241	12.7875
ggggg[a[bb[cccooooooccc]bb]a22gg	chr19:18547567-18547863(-)$1	296	134	166	11.1314
fff[eeeee"""bbnnnnnbb333eeeeefff	chr19:2425991-2426267(-)$1	276	167	199	11.3238
hhhhh[dddd[cccnnnnnccc]dddd]hhhh	chr11:122929983-122930200(-)$1	217	166	198	13.1583
dddd"""ccc[ddddllldddd]ccc]dddd:	chr17:80231340-80231633(-)$1	293	96	128	8.7055
[ccc[ccc[bb!!ccclllccc22bb]ccc]c	chr11:122930016-122930227(-)$1	211	128	160	9.7997
fffeeeee!!ddddnnnnndddd22eeeee33	chr3:184079460-184079790(+)$1	330	275	307	12.1070
DDiiiiiiiiicccnnnnnccc]iiiiiiiii	chr19:1881804-1882101(-)$1	297	234	266	13.1142
ccc####bb[a[bbnnnnnbb]a]bb]ccc22	chr3:128211744-128211964(+)$1	220	48	80	11.7858
##ccc[ccc!!eeeeellleeeeeccc]cccg	chr7:5569349-5569609(-)$1	260	118	150	9.3832
hhhhh[dddd[cccnnnnnccc]dddd]hhhh	chr11:122929945-122930149(-)$1	204	115	147	13.1583
ffffff[ccc[cccmmmmccc]cccffffff]	chr2:200323096-200323381(-)$1	285	43	75	8.5727
Deeeee[bb[ddddnnnnndddd]bbeeeeeg	chr17:8076704-8076926(-)$1	222	86	118	11.9613
[a[dddd####cccnnnnnccc]dddd]a]cc	chr19:2425550-2425840(-)$1	290	126	158	13.3044
!!hhhhhhhh[ddddllldddd]hhhhhhhh2	chr19:2270204-2270528(+)$1	324	285	317	10.1165
Deeeee[bb[ddddnnnnndddd]bbeeeeeg	chr17:8076657-8076872(-)$1	215	32	64	11.9613
======!!a"""bbnnnnnbb]a22=======	chr19:1652298-1652554(-)$1	256	191	223	13.2883
eeedddd[a!!a[annnnna]a22a]dddd33	chr19:52729134-52729495(+)$1	361	254	286	12.5485
eeddddbbccccccooooooccc]ccc22bb2	chr3:186648354-186648607(+)$1	253	206	238	9.5666

#otherMatches

#Seq PSSM
GAGCAGUUUCUUGUUUUGCAUGUGGAACUGUU	chr11:75111377-75111612(+)$1	235	18	50	12.6119
gacggggccccggccAAGGGCGACGGCCCCGU	chrX:152954103-152954376(+)$1	273	7	39	11.2642
GAUCCGAGGGUCACACUACGUGACUUCUGGGU	chr20:1165127-1165384(-)$1	257	159	191	10.5684
CCACAGAAUGCUCACGGGUUGAGUGUCACGUA	chr22:20068093-20068356(+)$1	263	200	232	11.6838
GUGCGCUUUACGCGACUGCCGCUGGAGCGCGG	chr22:21983344-21983575(-)$1	231	140	172	15.7962
CAGGGGACUGGGGUCACUAAcccccccccggg	chr19:54971699-54971951(+)$1	252	45	77	10.7840
CUAUAGUUUAAGGGUGUCCCAGGCCUUGGCUG	chr19:13250242-13250501(+)$1	259	194	226	10.1002
GGACUUGGGAGCCCUCCUUUGCCUGCUCCCGC	chr22:19710374-19710612(+)$1	238	12	44	8.9448
gaugcaugaaacgugauuaacgucucugcgua	chr17:8076672-8076904(-)$1	232	64	96	11.9613
GGGGGGCGUGUCCACCGGCGGGGGCGUGCCGU	chr6:167369854-167370160(-)$1	306	36	68	10.0872
GGAGGAGUUUGUGGCUUUGGCACUGACUUCUG	chr12:123997699-123998012(-)$1	313	177	209	12.3975
GGAAGCCGUAGAGCUCCCCGGUCUCGGGCUGC	chr15:70389958-70390288(-)$1	330	234	266	11.3772
caaccuuggggucugaucuuagaccccacguc	chr12:123998577-123998824(-)$1	247	63	95	8.3405
gaugcaugaaacgugauuaacgucucugcgua	chr17:8076726-8076943(-)$1	217	103	135	11.9613
AACGGACCCGGGGAAGCCCUUCUGGGGUCCGA	chr22:20004105-20004395(-)$1	290	217	249	10.8831
GAGCAGUUUCUUGUUUUGCAUGUGGAACUGUU	chr11:75111333-75111576(+)$1	243	62	94	12.6119
AACCGGGCGGAGGCGGGGCUGGCGCCCGGUUG	chr7:5569465-5569798(-)$1	333	260	292	12.3491
UAAAACAGGAGCUAUGUACUGGGUUUUCUUUU	chr11:122929976-122930183(-)$1	207	149	181	13.1583
gaugcaugaaacgugauuaacgucucugcgua	chr17:8076746-8076968(-)$1	222	128	160	11.9613
CAUCUAAGGCCCCGUGCCUGGGUAAGCCUUGU	chr19:1416432-1416664(+)$1	232	101	133	9.3897
UAAAACAGGAGCUAUGUACUGGGUUUUCUUUU	chr11:122929971-122930176(-)$1	205	142	174	13.1583
UGCCUGGGGUGUGCUCUCUGCAGUGCUGCCAG	chr16:89367059-89367310(-)$1	251	108	140	13.8003
GUGCAGGGCUUGGGGUGGGCCUAGUCCUGCUC	chr2:97525789-97526033(-)$1	244	209	241	12.7875
GGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGG	chr19:18547567-18547863(-)$1	296	134	166	11.1314
CAGUCACGUGGUGGUCACUCCUGGAUGUGCUG	chr19:2425991-2426267(-)$1	276	167	199	11.3238
UAAAACAGGAGCUAUGUACUGGGUUUUCUUUU	chr11:122929983-122930200(-)$1	217	166	198	13.1583
GGAUUUAGGCCCGGAAGAUCCGAGUCCAUCCG	chr17:80231340-80231633(-)$1	293	96	128	8.7055
aguuuccaccaaaagcuuggcuaaugauggca	chr11:122930016-122930227(-)$1	211	128	160	9.7997
CUGCGGAGCUGUCUACAUCGGACUCCUCCGGG	chr3:184079460-184079790(+)$1	330	275	307	12.1070
CCGGGGGUGCCCAGCUGGACUGUGGCACCCCC	chr19:1881804-1882101(-)$1	297	234	266	13.1142
GCUGGGAGCAGGGCGAGGUGCGCGGCAGGCGG	chr3:128211744-128211964(+)$1	220	48	80	11.7858
CUGGCUUCCUGCCGCGCGCCGCGGGGACGCCU	chr7:5569349-5569609(-)$1	260	118	150	9.3832
UAAAACAGGAGCUAUGUACUGGGUUUUCUUUU	chr11:122929945-122930149(-)$1	204	115	147	13.1583
CUUGUCGCCGCCGCCUCCGCGCCGGGACGAGU	chr2:200323096-200323381(-)$1	285	43	75	8.5727
gaugcaugaaacgugauuaacgucucugcgua	chr17:8076704-8076926(-)$1	222	86	118	11.9613
CUGCCUGCUCUGCCGCCGAGGCCCGGGGAUGG	chr19:2425550-2425840(-)$1	290	126	158	13.3044
AGGGCUUCUCCGCGGGGGCCGCCGGGGAGCUG	chr19:2270204-2270528(+)$1	324	285	317	10.1165
gaugcaugaaacgugauuaacgucucugcgua	chr17:8076657-8076872(-)$1	215	32	64	11.9613
gggggcccccccgcuucaugccgccgcccccc	chr19:1652298-1652554(-)$1	256	191	223	13.2883
CCUGGGAAGAUGUCUCACUGUCCACCUCCCAA	chr19:52729134-52729495(+)$1	361	254	286	12.5485
GAGCGGGCGGCCGCCACCGAGCGUGCUGAGCA	chr3:186648354-186648607(+)$1	253	206	238	9.5666

#DB
((((((((((.(((...)))...)))))))))	chr11:75111377-75111612(+)$1	1	18	50	12.6119
.((((((((...(((...)))...))))))))	chrX:152954103-152954376(+)$1	1	7	39	11.2642
(((((.((((((((.....))))).))).)).	chr20:1165127-1165384(-)$1	1	159	191	10.5684
(.((...(((((((.....)))))))...)).	chr22:20068093-20068356(+)$1	1	200	232	11.6838
.(((((((((.(((.....)))))))))))).	chr22:21983344-21983575(-)$1	1	140	172	15.7962
(.((((...(((((.....))))).)))).))	chr19:54971699-54971951(+)$1	1	45	77	10.7840
(((..((((..(((...)))))))..))))).	chr19:13250242-13250501(+)$1	1	194	226	10.1002
)))).(((((((.(......)...))))))).	chr22:19710374-19710612(+)$1	1	12	44	8.9448
((((((.((.((((.....)))).)))))))(	chr17:8076672-8076904(-)$1	1	64	96	11.9613
.((((((((((((.((...)))))))))))..	chr6:167369854-167370160(-)$1	1	36	68	10.0872
(.(((((((.(((.(...).))).))))))).	chr12:123997699-123998012(-)$1	1	177	209	12.3975
...((((..(((.(.....).)))..))))..	chr15:70389958-70390288(-)$1	1	234	266	11.3772
.((((((((((((((....)))))))))....	chr12:123998577-123998824(-)$1	1	63	95	8.3405
((((((.((.((((.....)))).)))))))(	chr17:8076726-8076943(-)$1	1	103	135	11.9613
..(((((((.((((.....)))).))))))).	chr22:20004105-20004395(-)$1	1	217	249	10.8831
((((((((((.(((...)))...)))))))))	chr11:75111333-75111576(+)$1	1	62	94	12.6119
(((((((((..(((...)))..))))))))).	chr7:5569465-5569798(-)$1	1	260	292	12.3491
(((((.((((.(((.....))).)))).))))	chr11:122929976-122930183(-)$1	1	149	181	13.1583
((((((.((.((((.....)))).)))))))(	chr17:8076746-8076968(-)$1	1	128	160	11.9613
(((((((((((((......)))...)))))).	chr19:1416432-1416664(+)$1	1	101	133	9.3897
(((((.((((.(((.....))).)))).))))	chr11:122929971-122930176(-)$1	1	142	174	13.1583
((((((((((.(((.....)))..))).))))	chr16:89367059-89367310(-)$1	1	108	140	13.8003
..((((((((.(((.....)))))))))))))	chr2:97525789-97526033(-)$1	1	209	241	12.7875
(((((.(.((.(((......))).)).)..))	chr19:18547567-18547863(-)$1	1	134	166	11.1314
(((.(((((...((.....))...))))))))	chr19:2425991-2426267(-)$1	1	167	199	11.3238
(((((.((((.(((.....))).)))).))))	chr11:122929983-122930200(-)$1	1	166	198	13.1583
((((...(((.((((...)))).))).)))).	chr17:80231340-80231633(-)$1	1	96	128	8.7055
.(((.(((.((..(((...)))..)).))).)	chr11:122930016-122930227(-)$1	1	128	160	9.7997
((((((((..((((.....))))..)))))..	chr3:184079460-184079790(+)$1	1	275	307	12.1070
))((((((((((((.....))).)))))))))	chr19:1881804-1882101(-)$1	1	234	266	13.1142
(((....((.(.((.....)).).)).)))..	chr3:128211744-128211964(+)$1	1	48	80	11.7858
..(((.(((..(((((...)))))))).))))	chr7:5569349-5569609(-)$1	1	118	150	9.3832
(((((.((((.(((.....))).)))).))))	chr11:122929945-122930149(-)$1	1	115	147	13.1583
((((((.(((.(((....))).))))))))).	chr2:200323096-200323381(-)$1	1	43	75	8.5727
((((((.((.((((.....)))).)))))))(	chr17:8076704-8076926(-)$1	1	86	118	11.9613
.(.((((....(((.....))).)))).).))	chr19:2425550-2425840(-)$1	1	126	158	13.3044
..((((((((.((((...)))).)))))))).	chr19:2270204-2270528(+)$1	1	285	317	10.1165
((((((.((.((((.....)))).)))))))(	chr17:8076657-8076872(-)$1	1	32	64	11.9613
((((((..(...((.....)).)..)))))))	chr19:1652298-1652554(-)$1	1	191	223	13.2883
(((((((.(..(.(.....).)..).))))..	chr19:52729134-52729495(+)$1	1	254	286	12.5485
((((((((((((((......))).)))..)).	chr3:186648354-186648607(+)$1	1	206	238	9.5666

#PSSM
[ : 0.14	D : 0.14	h : 0.12	e : 0.09	f : 0.09	= : 0.07	d : 0.04	c : 0.04	# : 0.04	! : 0.04	a : 0.02	b : 0.02	: : 0.02	i : 0.02	g : 0.02	
e : 0.21	h : 0.14	c : 0.09	f : 0.09	= : 0.07	[ : 0.07	d : 0.04	i : 0.04	# : 0.04	! : 0.04	: : 0.02	g : 0.02	D : 0.02	a : 0.02	
h : 0.19	e : 0.19	d : 0.09	c : 0.09	f : 0.09	= : 0.07	i : 0.07	g : 0.07	b : 0.04	# : 0.02	[ : 0.02	
h : 0.19	e : 0.17	d : 0.14	= : 0.07	b : 0.07	i : 0.07	c : 0.07	g : 0.07	f : 0.04	! : 0.02	[ : 0.02	# : 0.02	
h : 0.19	e : 0.19	d : 0.12	i : 0.09	= : 0.07	g : 0.07	" : 0.04	f : 0.04	b : 0.02	! : 0.02	: : 0.02	[ : 0.02	# : 0.02	c : 0.02	
e : 0.19	[ : 0.17	d : 0.14	h : 0.09	i : 0.09	= : 0.07	g : 0.07	" : 0.04	f : 0.04	c : 0.02	# : 0.02	
d : 0.19	[ : 0.14	i : 0.12	h : 0.09	c : 0.07	" : 0.07	g : 0.07	= : 0.04	e : 0.04	f : 0.02	a : 0.02	# : 0.02	! : 0.02	b : 0.02	
b : 0.17	c : 0.14	i : 0.12	d : 0.12	g : 0.09	h : 0.07	= : 0.04	! : 0.04	[ : 0.04	e : 0.04	" : 0.02	f : 0.02	# : 0.02	
b : 0.17	c : 0.14	i : 0.12	d : 0.12	g : 0.09	h : 0.07	= : 0.04	! : 0.04	a : 0.04	" : 0.02	f : 0.02	e : 0.02	[ : 0.02	# : 0.02	
[ : 0.19	! : 0.12	c : 0.12	i : 0.09	d : 0.09	" : 0.07	= : 0.04	e : 0.04	g : 0.04	h : 0.04	b : 0.04	f : 0.02	# : 0.02	
[ : 0.31	d : 0.17	! : 0.09	c : 0.09	" : 0.07	i : 0.07	e : 0.04	g : 0.04	b : 0.02	a : 0.02	# : 0.02	
c : 0.46	d : 0.21	" : 0.07	e : 0.07	g : 0.04	i : 0.04	! : 0.02	[ : 0.02	a : 0.02	
c : 0.46	d : 0.21	e : 0.07	[ : 0.07	b : 0.07	i : 0.04	g : 0.02	! : 0.02	
c : 0.43	d : 0.21	e : 0.07	a : 0.07	b : 0.07	[ : 0.04	g : 0.02	i : 0.02	o : 0.02	
n : 0.58	l : 0.09	o : 0.09	c : 0.04	d : 0.04	b : 0.02	a : 0.02	i : 0.02	e : 0.02	m : 0.02	
n : 0.58	l : 0.19	o : 0.09	m : 0.04	b : 0.02	c : 0.02	e : 0.02	
n : 0.58	l : 0.26	o : 0.09	m : 0.04	
n : 0.58	l : 0.17	c : 0.09	o : 0.09	m : 0.04	
n : 0.58	c : 0.14	o : 0.09	l : 0.07	d : 0.04	a : 0.02	m : 0.02	
c : 0.41	d : 0.21	b : 0.09	e : 0.07	o : 0.07	a : 0.04	g : 0.02	] : 0.02	i : 0.02	
c : 0.39	d : 0.24	b : 0.09	e : 0.07	3 : 0.04	] : 0.04	g : 0.02	a : 0.02	i : 0.02	2 : 0.02	
c : 0.36	d : 0.24	3 : 0.12	e : 0.07	] : 0.07	i : 0.04	g : 0.02	2 : 0.02	a : 0.02	
d : 0.19	] : 0.19	3 : 0.14	c : 0.12	i : 0.09	e : 0.07	2 : 0.07	a : 0.04	g : 0.02	h : 0.02	
] : 0.24	d : 0.14	i : 0.12	2 : 0.12	3 : 0.09	e : 0.07	c : 0.07	= : 0.04	h : 0.04	g : 0.02	
b : 0.19	i : 0.12	d : 0.12	c : 0.12	g : 0.09	2 : 0.09	h : 0.07	= : 0.04	] : 0.04	3 : 0.02	e : 0.02	a : 0.02	
b : 0.19	d : 0.14	c : 0.12	i : 0.12	g : 0.09	= : 0.07	h : 0.07	2 : 0.04	f : 0.04	e : 0.04	] : 0.02	
d : 0.19	e : 0.19	i : 0.12	c : 0.09	] : 0.09	= : 0.07	h : 0.07	g : 0.07	f : 0.04	3 : 0.02	
e : 0.19	] : 0.17	i : 0.12	d : 0.09	= : 0.07	h : 0.07	c : 0.07	g : 0.07	f : 0.04	3 : 0.02	a : 0.02	2 : 0.02	
h : 0.19	e : 0.19	i : 0.09	d : 0.09	= : 0.07	g : 0.07	c : 0.07	f : 0.04	2 : 0.04	] : 0.02	3 : 0.02	> : 0.02	a : 0.02	
h : 0.19	e : 0.17	i : 0.09	= : 0.07	b : 0.07	g : 0.07	d : 0.07	f : 0.07	c : 0.07	] : 0.04	> : 0.02	2 : 0.02	
h : 0.17	e : 0.14	g : 0.09	= : 0.07	b : 0.07	i : 0.07	3 : 0.07	f : 0.07	2 : 0.04	d : 0.04	c : 0.04	a : 0.02	> : 0.02	] : 0.02	
] : 0.19	g : 0.19	h : 0.14	2 : 0.09	= : 0.07	: : 0.07	3 : 0.07	c : 0.04	> : 0.02	d : 0.02	f : 0.02	i : 0.02	

#score	472.96711129689515
#seq	41
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_transcript_m3_run1.txt

#BEAR
eeee####ddddmmmmdddd22eeeee	chr6:44194850-44195078(+)$1	228	29	56	15.4862
####ccc[ddddmmmmddddccc4444	chr6:33247529-33247793(-)$1	264	18	45	14.0774
c!!dddd[ddddmmmmdddddddd]cc	chr12:120635140-120635420(-)$1	280	181	208	13.4758
c[dddd"""ddddllldddd]dddd]c	chr14:58686303-58686591(+)$1	288	248	275	11.8935
eeeee"""ddddmmmmdddd22eeeee	chr6:159197445-159197699(-)$1	254	79	106	15.5952
ggggg"""ddddmmmmdddd333gggg	chr8:53597952-53598233(-)$1	281	105	132	16.8010
ff[ccca[ddddmmmmdddd]a22ccc	chr21:47615534-47615836(-)$1	302	202	229	15.0830
:ffffff[ddddmmmmddddffffff:	chr6:170112502-170112776(-)$1	274	5	32	11.8132
ccc!!a!!ddddmmmmdddd22a22cc	chr4:25785756-25786063(-)$1	307	229	256	15.6685
ggggggg[ddddmmmmddddggggggg	chr1:247065828-247066128(-)$1	300	91	118	14.4941
ee[ccc[eeeeemmmmeeeeeccceee	chr1:2449595-2449851(-)$1	256	189	216	9.7382
e[ffffff[ddddllldddd]ffffff	chr16:24761907-24762230(+)$1	323	237	264	10.7898
#ccc[ddddddddllldddd]dddd]c	chr11:61908726-61908991(+)$1	265	149	176	11.4653
hhhhhhhhddddmmmmdddd333hhhh	chr15:91459430-91459717(+)$1	287	75	102	12.8601
ggg!!a[addddmmmmdddd]a]a22g	chr22:21997293-21997545(+)$1	252	178	205	14.9959
dddd"""addddmmmmdddd]a4444d	chr19:6742816-6743102(+)$1	286	70	97	14.8480
=======ddddnnnnndddd22=====	chr19:10278870-10279160(-)$1	290	101	128	11.5516
=====:cccddddllldddd]cccddd	chr3:139088303-139088552(-)$1	249	90	117	10.6938
#gggggggddddmmmmdddd]gggggg	chrX:41201598-41201845(+)$1	247	140	167	14.5902
gg$$$$$ddddnnnnndddd333gggg	chr19:1055906-1056152(+)$1	246	103	130	11.2596
ccc[ccc[ddddmmmmdddd22ccc]c	chr19:1819034-1819287(-)$1	253	91	118	15.4499
ggggggg!!cccmmmmccc4444gggg	chr11:64569429-64569696(-)$1	267	93	120	11.6654
eeeee####cccmmmmccc4444eeee	chr16:2256845-2257115(+)$1	270	21	48	11.4611
ccdddd!!ddddmmmmdddd22dddd:	chr9:138836963-138837214(-)$1	251	109	136	13.9305
f===========mmmm===========	chr5:178032221-178032536(-)$1	315	259	286	10.0676
:eeeee!!ddddllldddd333eeeee	chr5:177631693-177631948(+)$1	255	212	239	11.6989
[eeeee!!ddddmmmmdddd22eeeee	chr1:158585095-158585355(-)$1	260	145	172	15.3034
ffffff!!ddddmmmmdddd22fffff	chr9:139611867-139612139(+)$1	272	204	231	15.0783
fffff"""ddddmmmmddddffffff:	chr6:34730229-34730509(+)$1	280	238	265	13.4902
###dddd[ddddmmmmdddd22dddd4	chr2:86360142-86360422(+)$1	280	97	124	14.3462
c####a[ddddnnnnndddd]accc33	chr8:21997640-21997920(-)$1	280	55	82	11.1923
ffffff!!ddddmmmmdddd]ffffff	chr1:27271721-27272006(+)$1	285	25	52	14.6229
gggbb"""ddddmmmmdddd333bb]g	chr7:44157637-44157885(-)$1	248	181	208	15.6406
ccc!!bb[ddddmmmmddddbb22ccc	chr16:15694442-15694702(-)$1	260	5	32	13.3980
!bb####ddddammmma]dddd333bb	chr16:113666-113969(-)$1	303	85	112	11.4106
dd[eeeeeddddmmmmdddd333eeee	chr10:6150515-6150787(+)$1	272	78	105	14.6049
ddd!!bb[ddddmmmmdddd]bb22dd	chr9:137320763-137321051(+)$1	288	92	119	13.2881
::eeeee[ddddmmmmdddd]eeeeei	chr2:102485927-102486211(+)$1	284	14	41	12.5708
eee[ccc[ddddmmmmdddd333ccc]	chr12:110782536-110782786(+)$1	250	116	143	15.8145
:a[dddd[ddddmmmmdddd]dddda:	chr17:80054862-80055130(-)$1	268	134	161	12.3537
fffff"""ddddmmmmdddd333ffff	chr5:175777509-175777792(-)$1	283	15	42	16.1625
::bb[cccddddmmmmdddd]ccc]bb	chr7:99053894-99054156(+)$1	262	229	256	11.6109
i[cccbb[ddddmmmmdddd]bb]ccc	chr12:120611855-120612119(-)$1	264	155	182	14.1538
ggggg"""ddddmmmmdddd4444ggg	chr19:14093964-14094235(-)$1	271	142	169	16.2279
b!!bb"""ddddmmmmdddd333bb33	chr1:16054418-16054672(+)$1	254	202	229	15.5444
fffff[a[ddddmmmmdddd]afffff	chr19:56202767-56203064(+)$1	297	43	70	14.8394
""eeeee!!cccmmmmccc22eeeee2	chr8:21958772-21959077(+)$1	305	67	94	10.0407
edddd"""ddddmmmmdddd333dddd	chr9:135525549-135525840(-)$1	291	59	86	15.5912
:ffffff[ddddmmmmdddd]ffffff	chr1:35652699-35652966(-)$1	267	34	61	13.3740

#otherMatches

#Seq PSSM
GGUCUUACUGGACUCCUCCACUGGCCU	chr6:44194850-44195078(+)$1	228	29	56	15.4862
UUGGAGGUAGAGAAAGCUCUCCUGAUG	chr6:33247529-33247793(-)$1	264	18	45	14.0774
UCUGCAGAUUGGCUACCCAACUGUUGC	chr12:120635140-120635420(-)$1	280	181	208	13.4758
AUCCUAAAAGUAUUUAAUAUAUAGGUU	chr14:58686303-58686591(+)$1	288	248	275	11.8935
UAAGAAUUGAUUUGCGAAUCUCUCUUA	chr6:159197445-159197699(-)$1	254	79	106	15.5952
GAUUGUAGUUGCAUUUGUAAAAUUGAU	chr8:53597952-53598233(-)$1	281	105	132	16.8010
UGGCCUGGAGGCCUUCGCCUGUAUGGG	chr21:47615534-47615836(-)$1	302	202	229	15.0830
AUGAAAAAUUAGUACUCUAGUUUUCAA	chr6:170112502-170112776(-)$1	274	5	32	11.8132
UGUCAGAGGGAAACAGUUCCACCACAC	chr4:25785756-25786063(-)$1	307	229	256	15.6685
AUUUUAGAGUGACUUUUUGCCUAGAAU	chr1:247065828-247066128(-)$1	300	91	118	14.4941
UCCGGGCUGAUGAGUGCAUCACCCGAG	chr1:2449595-2449851(-)$1	256	189	216	9.7382
UGUAAACUAUUUAUAUUAAGCAGUUUA	chr16:24761907-24762230(+)$1	323	237	264	10.7898
CGCAGGCUUGCUGGCACAGCUGGGCAU	chr11:61908726-61908991(+)$1	265	149	176	11.4653
CCCAGGGAGCCAGGUCUGGCUAGUCCC	chr15:91459430-91459717(+)$1	287	75	102	12.8601
ACUGAGCGCCCCCUCGGGGGACACAGA	chr22:21997293-21997545(+)$1	252	178	205	14.9959
CCCUUUUCCACCUGGAGGUGCGUCCUG	chr19:6742816-6743102(+)$1	286	70	97	14.8480
UUUUUUCCCUGCAACUUAGGAAGAAAA	chr19:10278870-10279160(-)$1	290	101	128	11.5516
AAGAUAUUUCCAACAUUUGGUAGAACU	chr3:139088303-139088552(-)$1	249	90	117	10.6938
GCUGUUCAGGUUUGAUGAUCGUGGACG	chrX:41201598-41201845(+)$1	247	140	167	14.5902
CUCUCCCGGCCCCCCCGGCCCUCAGCU	chr19:1055906-1056152(+)$1	246	103	130	11.2596
AGCAGGCGGGGCAGGGGUCUGAGCCAG	chr19:1819034-1819287(-)$1	253	91	118	15.4499
UUCCUUUCAGCCACUGGGCCCCUGGAG	chr11:64569429-64569696(-)$1	267	93	120	11.6654
ccagccacuggcuuaggcucccugcug	chr16:2256845-2257115(+)$1	270	21	48	11.4611
GCCUUGCAGCAUGUCGGUGCCUCAGGC	chr9:138836963-138837214(-)$1	251	109	136	13.9305
UUGGAUAUGUGCAAUAGCAUAUAUUCA	chr5:178032221-178032536(-)$1	315	259	286	10.0676
UCCCCGAAGGCGAGUcgccggccgggg	chr5:177631693-177631948(+)$1	255	212	239	11.6989
CUCUGUCGUUUUUCCAGAGAAAACAGA	chr1:158585095-158585355(-)$1	260	145	172	15.3034
GGCUGGGCGUCUUUGCAGGCAGCUGGC	chr9:139611867-139612139(+)$1	272	204	231	15.0783
AUUGACAAAACAAGUAUGUUUCAAUCU	chr6:34730229-34730509(+)$1	280	238	265	13.4902
AUUUCCCCUGUUGUUAGACAUAGGGAC	chr2:86360142-86360422(+)$1	280	97	124	14.3462
GCUAUGCAGCCGGACAGGCUCCCUGGA	chr8:21997640-21997920(-)$1	280	55	82	11.1923
GGAUCCAGUGUAGGCCUGCAAGGGUCU	chr1:27271721-27272006(+)$1	285	25	52	14.6229
GGGGCUACUUCAUCUCUGAGUCUGUAC	chr7:44157637-44157885(-)$1	248	181	208	15.6406
GAGAAACAUGCUUCUUGGCAGUAACUC	chr16:15694442-15694702(-)$1	260	5	32	13.3980
GCAUGCUGCCCCGGAGGAGGGCCUUUG	chr16:113666-113969(-)$1	303	85	112	11.4106
UUUGGGAGUCUGGCAUCGGAAACCUCC	chr10:6150515-6150787(+)$1	272	78	105	14.6049
GUGACAUGCUGCCUCUGUAGGGUCCCA	chr9:137320763-137321051(+)$1	288	92	119	13.2881
GAGCUCACUUUCUCAUGAAACUGGGUA	chr2:102485927-102486211(+)$1	284	14	41	12.5708
AGAGGCAAGUGCAUCAGCAUCACUGUG	chr12:110782536-110782786(+)$1	250	116	143	15.8145
AGUGGGGCAGGGGCCACCUUUCCCCCA	chr17:80054862-80055130(-)$1	268	134	161	12.3537
GGGGAAUGGGCAUGACUGUCAUCUCCU	chr5:175777509-175777792(-)$1	283	15	42	16.1625
CAGCAGCUGGAGCCAGCUCCGAGCAGC	chr7:99053894-99054156(+)$1	262	229	256	11.6109
GCGUCAGUCAUCACGUGGUGUCUGGAC	chr12:120611855-120612119(-)$1	264	155	182	14.1538
UGUCUCCACAGCGGCUGCUGGUCCAGA	chr19:14093964-14094235(-)$1	271	142	169	16.2279
AAAACGAAGAGCAGCUGUUCAAAGUAA	chr1:16054418-16054672(+)$1	254	202	229	15.5444
GCAGGUGGAGUUAAGGGGCUGCCCUGC	chr19:56202767-56203064(+)$1	297	43	70	14.8394
UUACUCUUUGGCCACAGCCCUGGGGUC	chr8:21958772-21959077(+)$1	305	67	94	10.0407
CUCCCAUGCCUUGUUUAAGGAAAGGGA	chr9:135525549-135525840(-)$1	291	59	86	15.5912
CUCUUGAAAAUUUCUCAGUUCUUAAGA	chr1:35652699-35652966(-)$1	267	34	61	13.3740

#DB
((((....((((....))))..)))))	chr6:44194850-44195078(+)$1	1	29	56	15.4862
....(((.((((....)))))))....	chr6:33247529-33247793(-)$1	1	18	45	14.0774
(..((((.((((....)))))))).))	chr12:120635140-120635420(-)$1	1	181	208	13.4758
(.((((...((((...)))).)))).)	chr14:58686303-58686591(+)$1	1	248	275	11.8935
(((((...((((....))))..)))))	chr6:159197445-159197699(-)$1	1	79	106	15.5952
(((((...((((....))))...))))	chr8:53597952-53598233(-)$1	1	105	132	16.8010
((.((((.((((....)))).)..)))	chr21:47615534-47615836(-)$1	1	202	229	15.0830
.((((((.((((....)))))))))).	chr6:170112502-170112776(-)$1	1	5	32	11.8132
(((..(..((((....))))..)..))	chr4:25785756-25786063(-)$1	1	229	256	15.6685
(((((((.((((....)))))))))))	chr1:247065828-247066128(-)$1	1	91	118	14.4941
((.(((.(((((....)))))))))))	chr1:2449595-2449851(-)$1	1	189	216	9.7382
(.((((((.((((...)))).))))))	chr16:24761907-24762230(+)$1	1	237	264	10.7898
.(((.((((((((...)))).)))).)	chr11:61908726-61908991(+)$1	1	149	176	11.4653
((((((((((((....))))...))))	chr15:91459430-91459717(+)$1	1	75	102	12.8601
(((..(.(((((....)))).).)..)	chr22:21997293-21997545(+)$1	1	178	205	14.9959
((((...(((((....)))).)....)	chr19:6742816-6743102(+)$1	1	70	97	14.8480
(((((((((((.....))))..)))))	chr19:10278870-10279160(-)$1	1	101	128	11.5516
))))).(((((((...)))).)))(((	chr3:139088303-139088552(-)$1	1	90	117	10.6938
.(((((((((((....)))).))))))	chrX:41201598-41201845(+)$1	1	140	167	14.5902
((.....((((.....))))...))))	chr19:1055906-1056152(+)$1	1	103	130	11.2596
(((.(((.((((....))))..))).)	chr19:1819034-1819287(-)$1	1	91	118	15.4499
(((((((..(((....)))....))))	chr11:64569429-64569696(-)$1	1	93	120	11.6654
(((((....(((....)))....))))	chr16:2256845-2257115(+)$1	1	21	48	11.4611
))((((..((((....))))..)))).	chr9:138836963-138837214(-)$1	1	109	136	13.9305
((((((((((((....)))))))))))	chr5:178032221-178032536(-)$1	1	259	286	10.0676
.(((((..((((...))))...)))))	chr5:177631693-177631948(+)$1	1	212	239	11.6989
.(((((..((((....))))..)))))	chr1:158585095-158585355(-)$1	1	145	172	15.3034
((((((..((((....))))..)))))	chr9:139611867-139612139(+)$1	1	204	231	15.0783
(((((...((((....)))))))))).	chr6:34730229-34730509(+)$1	1	238	265	13.4902
...((((.((((....))))..)))).	chr2:86360142-86360422(+)$1	1	97	124	14.3462
(....(.((((.....)))).))))..	chr8:21997640-21997920(-)$1	1	55	82	11.1923
((((((..((((....)))).))))))	chr1:27271721-27272006(+)$1	1	25	52	14.6229
(((((...((((....))))...)).)	chr7:44157637-44157885(-)$1	1	181	208	15.6406
(((..((.((((....))))))..)))	chr16:15694442-15694702(-)$1	1	5	32	13.3980
.((....(((((....).))))...))	chr16:113666-113969(-)$1	1	85	112	11.4106
((.(((((((((....))))...))))	chr10:6150515-6150787(+)$1	1	78	105	14.6049
(((..((.((((....)))).))..))	chr9:137320763-137321051(+)$1	1	92	119	13.2881
..(((((.((((....)))).)))))(	chr2:102485927-102486211(+)$1	1	14	41	12.5708
(((.(((.((((....))))...))).	chr12:110782536-110782786(+)$1	1	116	143	15.8145
.(.((((.((((....)))).))))).	chr17:80054862-80055130(-)$1	1	134	161	12.3537
(((((...((((....))))...))))	chr5:175777509-175777792(-)$1	1	15	42	16.1625
..((.(((((((....)))).))).))	chr7:99053894-99054156(+)$1	1	229	256	11.6109
(.(((((.((((....)))).)).)))	chr12:120611855-120612119(-)$1	1	155	182	14.1538
(((((...((((....))))....)))	chr19:14093964-14094235(-)$1	1	142	169	16.2279
(..((...((((....))))...))..	chr1:16054418-16054672(+)$1	1	202	229	15.5444
(((((.(.((((....)))).))))))	chr19:56202767-56203064(+)$1	1	43	70	14.8394
..(((((..(((....)))..))))).	chr8:21958772-21959077(+)$1	1	67	94	10.0407
)((((...((((....))))...))))	chr9:135525549-135525840(-)$1	1	59	86	15.5912
.((((((.((((....)))).))))))	chr1:35652699-35652966(-)$1	1	34	61	13.3740

#PSSM
e : 0.14	c : 0.14	g : 0.14	f : 0.14	: : 0.12	# : 0.08	d : 0.06	= : 0.04	h : 0.02	[ : 0.02	! : 0.02	i : 0.02	b : 0.02	" : 0.02	
g : 0.16	f : 0.16	e : 0.14	c : 0.10	d : 0.08	# : 0.06	[ : 0.06	= : 0.06	! : 0.04	: : 0.04	h : 0.02	b : 0.02	a : 0.02	" : 0.02	
e : 0.16	f : 0.16	g : 0.14	d : 0.10	c : 0.10	[ : 0.08	# : 0.06	= : 0.06	! : 0.04	b : 0.04	h : 0.02	$ : 0.02	
e : 0.16	f : 0.16	d : 0.14	g : 0.10	c : 0.08	! : 0.08	# : 0.06	= : 0.06	b : 0.06	[ : 0.04	h : 0.02	$ : 0.02	
f : 0.16	e : 0.14	c : 0.12	d : 0.12	g : 0.10	! : 0.08	# : 0.06	= : 0.06	[ : 0.04	b : 0.04	h : 0.02	" : 0.02	$ : 0.02	
" : 0.18	c : 0.12	d : 0.12	f : 0.10	e : 0.10	# : 0.06	a : 0.06	g : 0.06	b : 0.06	= : 0.04	h : 0.02	: : 0.02	$ : 0.02	[ : 0.02	
" : 0.20	! : 0.12	c : 0.10	d : 0.08	# : 0.06	f : 0.06	g : 0.06	[ : 0.06	b : 0.06	e : 0.06	a : 0.04	= : 0.04	h : 0.02	$ : 0.02	
[ : 0.30	" : 0.18	! : 0.16	d : 0.10	# : 0.04	e : 0.04	a : 0.04	c : 0.04	f : 0.02	h : 0.02	g : 0.02	= : 0.02	
d : 0.83	! : 0.04	" : 0.02	e : 0.02	[ : 0.02	c : 0.02	# : 0.02	= : 0.02	
d : 0.89	c : 0.06	e : 0.02	= : 0.02	
d : 0.89	c : 0.06	e : 0.02	= : 0.02	
d : 0.81	n : 0.06	c : 0.06	e : 0.02	= : 0.02	a : 0.02	
m : 0.83	d : 0.08	n : 0.06	l : 0.02	
m : 0.83	l : 0.10	n : 0.06	
m : 0.83	l : 0.10	n : 0.06	
m : 0.83	l : 0.08	n : 0.06	d : 0.02	
d : 0.87	c : 0.06	e : 0.02	= : 0.02	a : 0.02	
d : 0.87	c : 0.06	e : 0.02	= : 0.02	] : 0.02	
d : 0.89	c : 0.06	e : 0.02	= : 0.02	
d : 0.87	4 : 0.04	e : 0.02	= : 0.02	3 : 0.02	2 : 0.02	
] : 0.34	2 : 0.20	3 : 0.20	4 : 0.06	d : 0.04	f : 0.04	c : 0.02	g : 0.02	e : 0.02	= : 0.02	b : 0.02	
3 : 0.20	2 : 0.18	d : 0.10	a : 0.10	f : 0.10	c : 0.08	4 : 0.06	b : 0.06	g : 0.04	e : 0.04	= : 0.02	
3 : 0.20	f : 0.14	e : 0.12	c : 0.12	d : 0.12	4 : 0.08	2 : 0.04	g : 0.04	= : 0.04	b : 0.04	a : 0.02	] : 0.02	
e : 0.16	f : 0.16	d : 0.14	c : 0.12	g : 0.10	2 : 0.08	4 : 0.06	= : 0.04	b : 0.04	h : 0.02	a : 0.02	3 : 0.02	] : 0.02	
e : 0.18	f : 0.16	d : 0.14	g : 0.12	c : 0.12	2 : 0.06	4 : 0.04	] : 0.04	= : 0.04	b : 0.04	h : 0.02	3 : 0.02	
e : 0.18	f : 0.16	c : 0.12	g : 0.12	d : 0.10	] : 0.08	4 : 0.04	= : 0.04	3 : 0.04	b : 0.04	h : 0.02	2 : 0.02	a : 0.02	
c : 0.16	g : 0.16	e : 0.14	f : 0.12	: : 0.08	d : 0.08	4 : 0.04	= : 0.04	3 : 0.04	b : 0.04	h : 0.02	i : 0.02	] : 0.02	2 : 0.02	

#score	662.115891156874
#seq	49
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_transcript_m1_run2.txt

#BEAR
iiiiiiii[a[a[bbbbmmmmbb]bb]a]aiiiiiiiii	chr2:240287745-240287966(-)$1	221	98	137	14.1694
####ccc"""eeeeeccclllccc]eeeee]cccggggg	chr22:22007349-22007602(+)$1	253	145	184	13.6676
c####iiiiiiiii!!bblllbb]iiiiiiiii22ccc]	chr1:3639663-3639926(+)$1	263	21	60	14.7970
dd[==========cccrrrrrrrrrccc]==========	chr16:88562229-88562545(+)$1	316	257	296	15.4547
eee[bb!!bb!!ddddnnnnndddd22bb22bb333eee	chr3:65577768-65578079(-)$1	311	230	269	12.9182
ffffff"""gggggggnnnnnggggggg]ffffffa]cc	chr16:4744640-4744925(+)$1	285	21	60	14.3451
i[bb[bbccc"""cccnnnnncccccc]bbbbiiiiiii	chr13:113764531-113764804(+)$1	273	99	138	16.0812
=[ffffff[ccc[cccnnnnnccc]ccc]ffffff333=	chr1:246591737-246592066(-)$1	329	33	72	16.1901
=========bb!!cccooooooccc22bb]=========	chr1:1241140-1241411(-)$1	271	203	242	17.9131
eee!!eeeeebb[cccnnnnncccbb22eeeee333eee	chr14:24901494-24901759(+)$1	265	191	230	13.5251
""iiiiiiiii####ccclllccciiiiiiiii]ccc]g	chr1:41222801-41223059(+)$1	258	183	222	17.3234
eeee$$$$$gggggggnnnnnggggggg4444eeeee22	chr19:47109457-47109702(+)$1	245	186	225	12.8253
ccc[ggggggg"""bbnnnnnbb333gggggggccceee	chr5:1068957-1069200(-)$1	243	26	65	16.4925
===="""ccc[a"""ccclllccc333a]ccc333====	chr16:89788164-89788464(+)$1	300	178	217	18.0016
[bba===========ccclllccc22===========]a	chr7:65338717-65339040(+)$1	323	214	253	17.8101
========="""dddd!!allla22dddd]=========	chr17:75425683-75425962(+)$1	279	73	112	15.4178
gg[a[ddddccc[ccclllcccccc]dddda]ggggggg	chr18:20798671-20798925(+)$1	254	121	160	13.0969
""iiiiiiiiiccccccmmmmccc22ccc]iiiiiiiii	chr11:2155993-2156220(-)$1	227	120	159	16.1710
cc[ccc[ccc"""cccnnnnnccc]cccccc]ccc]ccc	chr1:3639301-3639596(+)$1	295	91	130	17.1539
fffff[ccc[ccc[bbnnnnnbbccccccffffff]a]a	chr2:130795299-130795586(-)$1	287	146	185	14.0562
====!!ccc"""ddddmmmmdddd]ccc]==========	chr17:76798001-76798286(-)$1	285	57	96	15.4506
ggggg!!ccc!!bb[ccclllccc22bb22ccc]ggggg	chr5:179230415-179230676(-)$1	261	37	76	14.5367
========[ccc[cccnnnnnccc]ccc]==========	chr22:20073863-20074182(+)$1	319	104	143	20.4949
iiiiiiii####ddddnnnnndddd4444iiiiiiiii2	chr14:105813674-105813918(+)$1	244	136	175	17.7839
ffff!!ccc!!ddddoooooodddd22ccc]ffffff22	chr22:22006985-22007253(+)$1	268	193	232	12.6931
ggggg]bbdddd[cccnnnnnccc22ddddccc[bb[cc	chr9:97848101-97848370(+)$1	269	172	211	13.8367
=====================]ccc22a]ggggggg]bb	chr7:158158906-158159162(-)$1	256	208	247	14.3546
""ggggggg"""ddddnnnnndddd]ggggggg333ccc	chr3:52302056-52302310(-)$1	254	200	239	16.9196
cc[ccc[ccceeeeeooooooeeeee]ccc333ccc22c	chr1:988458-988721(+)$1	263	3	42	12.2097
ccc!!eeeee!!ddddnnnnndddd333eeeee]ccc]b	chr4:1290402-1290643(+)$1	241	159	198	14.6690
=========!!a[cccooooooccca]===========]	chr16:14403438-14403685(+)$1	247	151	190	19.2462
"ccc!!bb"""ccc[annnnna]cccbb22ccc]ccc]a	chr13:111314634-111314897(-)$1	263	125	164	15.1009
[=========="""cccmmmmccc]==========aCCC	chr22:20074298-20074564(+)$1	266	75	114	13.9395
f!!hhhhhhhh!!cccnnnnnccchhhhhhhh]ffffff	chrX:151127210-151127450(-)$1	240	39	78	13.8937
ffff!!eeeee"""bbnnnnnbbeeeee333ffffff]h	chr19:13946616-13946992(-)$1	376	165	204	13.6696
c"""ccc!!iiiiiiiiillliiiiiiiii]ccc]ccc]	chr22:50880203-50880496(+)$1	293	30	69	15.1750
=============cccnnnnnccc333============	chr20:36014821-36015138(+)$1	317	104	143	21.5760
iiiiiiii:gggggggnnnnngggggggeeeee[bb!!b	chr16:2579518-2579772(+)$1	254	95	134	13.6163
ddd[ggggggg####ccclllccc22gggggggdddd==	chr9:97847742-97847963(+)$1	221	15	54	14.4956
========a!!ddddoooooodddd22a]==========	chr2:241812977-241813328(+)$1	351	144	183	17.4502
:cccggggggg[ddddnnnnndddd22ggggggg]ccc:	chr18:30350572-30350810(+)$1	238	12	51	13.8294
gg[==========cccnnnnnccc]==========22gg	chr20:31150174-31150469(-)$1	295	65	104	19.9638
==="""a[eeeee[bbnnnnnbb]eeeee]a========	chr16:87416614-87416890(-)$1	276	13	52	16.1275
cc####ggggggg[bbnnnnnbbggggggg333ccc]bb	chr16:89895523-89895774(+)$1	251	185	224	15.6025
========[ccc[aqqqqqqqqaccc]============	chr1:44048847-44049217(+)$1	370	27	66	14.0414
ggggg!!iiiiiiiiiooooooiiiiiiiii22gggggg	chr10:424343-424686(-)$1	343	198	237	15.6719
============ffffff"""==================	chr1:227955289-227955531(+)$1	242	81	120	14.6626
gg[a[ccc!!bb[cccooooooccc]bb]ccc]a]gggg	chr6:16760800-16761040(-)$1	240	31	70	15.3117
=!!iiiiiiiii[cccnnnnnccc]iiiiiiiii22===	chr17:17717128-17717452(-)$1	324	232	271	19.7446
hh"""ccc[a[bb[bbnnnnnbb]bb]a]ccc333hhhh	chr20:62299800-62300044(+)$1	244	69	108	14.4048
!!============[ccclllccc]============]d	chr19:7972085-7972441(+)$1	356	191	230	18.7077

#otherMatches

#Seq PSSM
CACGCAUGACCCUGACGACCCUGCUCUGUGCAUGCGUGU	chr2:240287745-240287966(-)$1	221	98	137	14.1694
CAGAGGGCACCCUUUCCCCCCGGGCAGAGGCCCCGCCCC	chr22:22007349-22007602(+)$1	253	145	184	13.6676
cagguggcacagagcugggcaccucucugugccuggcac	chr1:3639663-3639926(+)$1	263	21	60	14.7970
AGAGUCCUCUGGAGCCGAAGGAGGAGGCUUCCAGAGGGC	chr16:88562229-88562545(+)$1	316	257	296	15.4547
GAUAUauuuauuuauucaacaaguauuuauuuaacaauc	chr3:65577768-65578079(-)$1	311	230	269	12.9182
GUGUUCAGGCUUCGUUGGGUGGACGGGGGGAGCAUGGGG	chr16:4744640-4744925(+)$1	285	21	60	14.3451
CACGUGGGCCCCAGGGGGUUGCCCGGCACCCGGGGCCGC	chr13:113764531-113764804(+)$1	273	99	138	16.0812
cagcaguuaagagcaugggcuguggucuagauugcacgg	chr1:246591737-246592066(-)$1	329	33	72	16.1901
GAGGCCAGGGGAGCCCGUGUAGGGGAACCGCCUGGCCUC	chr1:1241140-1241411(-)$1	271	203	242	17.9131
GGCAACUUGGUGACUGGCACACAGCGUUUCAAGGAGGCC	chr14:24901494-24901759(+)$1	265	191	230	13.5251
CACUCUCAGCUGUGAGCUCAAGGUGGCUGGGAGAGGGUU	chr1:41222801-41223059(+)$1	258	183	222	17.3234
gauguccccucggggaggccuucccugacccccaucuca	chr19:47109457-47109702(+)$1	245	186	225	12.8253
AGGUAUCGUGGUUUUCGGGGGGAUGUUCACGGUCCUGGU	chr5:1068957-1069200(-)$1	243	26	65	16.4925
CCUCUCCUCCACCCGGCCAAGGGCGUAGCGGACUCGGGG	chr16:89788164-89788464(+)$1	300	178	217	18.0016
GGGCCGGGGGUGUGGGACCUUGUCCACCGCACCCUUGAG	chr7:65338717-65339040(+)$1	323	214	253	17.8101
UGGCCAGUAAUAGGCUGACGAGGGAGGCCCUGCUGGCUG	chr17:75425683-75425962(+)$1	279	73	112	15.4178
GGUCACUUGUUCUGCUCCCAGCGAAUUAAGGCCCUGAUG	chr18:20798671-20798925(+)$1	254	121	160	13.0969
AUGCGCCUCCUUGGGCCCCAAGGCUGCCGUGGGGGGUGC	chr11:2155993-2156220(-)$1	227	120	159	16.1710
ccgggcaccucucugcaccuggcauggggcugggcaccu	chr1:3639301-3639596(+)$1	295	91	130	17.1539
CCGGGACCUCGCAUGCAUGAAGCUGCAGGCCCGGGGCGC	chr2:130795299-130795586(-)$1	287	146	185	14.0562
CACCAGGCGAGGGGUUGGGGGACCGCGUGGGUGUGCACC	chr17:76798001-76798286(-)$1	285	57	96	15.4506
CAUCUGAGGCAGUCGUGUGGGACAGAGAAAGCCAGGGUG	chr5:179230415-179230676(-)$1	261	37	76	14.5367
CUUGUCCCUUUGGCGGGAGUGUUGGUGACGGGGUAGGCA	chr22:20073863-20074182(+)$1	319	104	143	20.4949
UGGUGUUUUACAUUCAUACUUUGAGGGCCAAGCACCAGC	chr14:105813674-105813918(+)$1	244	136	175	17.7839
AUGGACUGGACGGGGGCUCUGCCCCACCCACCCAUCCAU	chr22:22006985-22007253(+)$1	268	193	232	12.6931
GCUUCUCCGGGCUGUCGAUUGGACCCGCCCUCCGGUGCC	chr9:97848101-97848370(+)$1	269	172	211	13.8367
UGUGUGUGCAUGUGCACGCGUGCAUUGGGCUGCAGCUUC	chr7:158158906-158159162(-)$1	256	208	247	14.3546
AAUUGUGUAGUGUUCAAGUUAUGGAAUAUACAAAUAUCC	chr3:52302056-52302310(-)$1	254	200	239	16.9196
ugugugUACUGGGGCAUCCAAGCCCCUGGUCUCCACUCC	chr1:988458-988721(+)$1	263	3	42	12.2097
ugaaagcggucaguccacagcggaccccacugccucgag	chr4:1290402-1290643(+)$1	241	159	198	14.6690
AGGGCCUCCGGGAUCAUCGCcuuggcagggggcccuggg	chr16:14403438-14403685(+)$1	247	151	190	19.2462
CGGGGUUGCAUGACGCAGAGGGGGUCCAAACCCAGCCAC	chr13:111314634-111314897(-)$1	263	125	164	15.1009
UCCAGAUUUUUAAAGUUUCCUAAUGAAAAGUUUGGCCCA	chr22:20074298-20074564(+)$1	266	75	114	13.9395
UGUUUCAUUUAUUGAGUCAGUCUCUGGAUGAGGGAAAGC	chrX:151127210-151127450(-)$1	240	39	78	13.8937
GGGCCUGGAGGCUUGGCCCCUCCUCUCCCAAGCCUGGCA	chr19:13946616-13946992(-)$1	376	165	204	13.6696
CAGAUACCUCUCUGGCCUCUGGGGUCAGGGCGUggguua	chr22:50880203-50880496(+)$1	293	30	69	15.1750
GGGGGGUGGGGGCUGCUGUCUGCAUGUGCUUCCACUCCC	chr20:36014821-36015138(+)$1	317	104	143	21.5760
GCCGGGUGGUUGGGGAGCUGGUCUCCAGGGAGUGAGUCG	chr16:2579518-2579772(+)$1	254	95	134	13.6163
UUGGUGAACAGUGAUUGGUUUCCGCUUUGUUCACAGUGG	chr9:97847742-97847963(+)$1	221	15	54	14.4956
CAGGGACACGGUGCCUGGGGUGGCAGGGCUGUCCCUGGG	chr2:241812977-241813328(+)$1	351	144	183	17.4502
ACCCUCCUCCAACCUGGCAGACaggggugggggauggga	chr18:30350572-30350810(+)$1	238	12	51	13.8294
gagucccuggcuuggccuggagucugggcuggggagauu	chr20:31150174-31150469(-)$1	295	65	104	19.9638
GUUUUGGGUGUGGGUGGGGAGCGGCCGCGGUGACACCAC	chr16:87416614-87416890(-)$1	276	13	52	16.1275
AGUUGGGGGGACAACCUGCUUGGUGUUUCUAUUCUUAAC	chr16:89895523-89895774(+)$1	251	185	224	15.6025
UGCCUGCCAGUCUCUGUUGUUUGGGCCGGCGGGCAGGCA	chr1:44048847-44049217(+)$1	370	27	66	14.0414
auguguucacaugugucuuugugcauguguguucacgug	chr10:424343-424686(-)$1	343	198	237	15.6719
auguguauaugugcaugucuuguguguggagcgugcaug	chr1:227955289-227955531(+)$1	242	81	120	14.6626
UCCCAUUCCUCCUCCCCGGAGAGGGCGGUGAGAGAGAGG	chr6:16760800-16761040(-)$1	240	31	70	15.3117
GUUGCAUUGCACGUGUGUGAGGCGGGUGCAGUGCCUCGG	chr17:17717128-17717452(-)$1	324	232	271	19.7446
CAAGUGCGAUGUCGGCGGGAGGUGGGGAAUGCUGGUGGG	chr20:62299800-62300044(+)$1	244	69	108	14.4048
GUGCGUGCGUGCACUUGCACGGCAUGUGCGUGCAUGUUG	chr19:7972085-7972441(+)$1	356	191	230	18.7077

#DB
((((((((.(.(.((((....)).)).).))))))))))	chr2:240287745-240287966(-)$1	1	98	137	14.1694
....(((...((((((((...))).))))).))))))))	chr22:22007349-22007602(+)$1	1	145	184	13.6676
(....(((((((((..((...)).)))))))))..))).	chr1:3639663-3639926(+)$1	1	21	60	14.7970
((.(((((((((((((.........))).))))))))))	chr16:88562229-88562545(+)$1	1	257	296	15.4547
(((.((..((..((((.....))))..))..))...)))	chr3:65577768-65578079(-)$1	1	230	269	12.9182
((((((...(((((((.....))))))).))))))).))	chr16:4744640-4744925(+)$1	1	21	60	14.3451
(.((.(((((...(((.....)))))).)))))))))))	chr13:113764531-113764804(+)$1	1	99	138	16.0812
(.((((((.(((.(((.....))).))).))))))...)	chr1:246591737-246592066(-)$1	1	33	72	16.1901
(((((((((((..(((......)))..)).)))))))))	chr1:1241140-1241411(-)$1	1	203	242	17.9131
(((..(((((((.(((.....)))))..)))))...)))	chr14:24901494-24901759(+)$1	1	191	230	13.5251
..(((((((((....(((...)))))))))))).))).)	chr1:41222801-41223059(+)$1	1	183	222	17.3234
((((.....(((((((.....)))))))....)))))..	chr19:47109457-47109702(+)$1	1	186	225	12.8253
(((.(((((((...((.....))...)))))))))))))	chr5:1068957-1069200(-)$1	1	26	65	16.4925
((((...(((.(...(((...)))...).)))...))))	chr16:89788164-89788464(+)$1	1	178	217	18.0016
.(((((((((((((((((...)))..))))))))))).)	chr7:65338717-65339040(+)$1	1	214	253	17.8101
(((((((((...((((..(...)..)))).)))))))))	chr17:75425683-75425962(+)$1	1	73	112	15.4178
((.(.(((((((.(((...)))))).))))).)))))))	chr18:20798671-20798925(+)$1	1	121	160	13.0969
..(((((((((((((((....)))..))).)))))))))	chr11:2155993-2156220(-)$1	1	120	159	16.1710
((.(((.(((...(((.....))).)))))).))).)))	chr1:3639301-3639596(+)$1	1	91	130	17.1539
(((((.(((.(((.((.....)))))))))))))).).)	chr2:130795299-130795586(-)$1	1	146	185	14.0562
((((..(((...((((....)))).))).))))))))))	chr17:76798001-76798286(-)$1	1	57	96	15.4506
(((((..(((..((.(((...)))..))..))).)))))	chr5:179230415-179230676(-)$1	1	37	76	14.5367
((((((((.(((.(((.....))).))).))))))))))	chr22:20073863-20074182(+)$1	1	104	143	20.4949
((((((((....((((.....))))....))))))))).	chr14:105813674-105813918(+)$1	1	136	175	17.7839
((((..(((..((((......))))..))).))))))..	chr22:22006985-22007253(+)$1	1	193	232	12.6931
))))).))((((.(((.....)))..))))(((.((.((	chr9:97848101-97848370(+)$1	1	172	211	13.8367
))))))))))))))))))))).)))..).))))))).))	chr7:158158906-158159162(-)$1	1	208	247	14.3546
..(((((((...((((.....)))).)))))))...)))	chr3:52302056-52302310(-)$1	1	200	239	16.9196
((.(((.((((((((......))))).)))...)))..)	chr1:988458-988721(+)$1	1	3	42	12.2097
(((..(((((..((((.....))))...))))).))).)	chr4:1290402-1290643(+)$1	1	159	198	14.6690
(((((((((..(.(((......)))).))))))))))).	chr16:14403438-14403685(+)$1	1	151	190	19.2462
.(((..((...(((.(.....).)))))..))).))).)	chr13:111314634-111314897(-)$1	1	125	164	15.1009
.((((((((((...(((....))).)))))))))))(((	chr22:20074298-20074564(+)$1	1	75	114	13.9395
(..((((((((..(((.....))))))))))).))))))	chrX:151127210-151127450(-)$1	1	39	78	13.8937
((((..(((((...((.....)))))))...)))))).)	chr19:13946616-13946992(-)$1	1	165	204	13.6696
(...(((..(((((((((...))))))))).))).))).	chr22:50880203-50880496(+)$1	1	30	69	15.1750
((((((((((((((((.....)))...))))))))))))	chr20:36014821-36015138(+)$1	1	104	143	21.5760
)))))))).(((((((.....)))))))(((((.((..(	chr16:2579518-2579772(+)$1	1	95	134	13.6163
(((.(((((((....(((...)))..)))))))))))))	chr9:97847742-97847963(+)$1	1	15	54	14.4956
(((((((((..((((......))))..).))))))))))	chr2:241812977-241813328(+)$1	1	144	183	17.4502
.((((((((((.((((.....))))..))))))).))).	chr18:30350572-30350810(+)$1	1	12	51	13.8294
((.(((((((((((((.....))).))))))))))..))	chr20:31150174-31150469(-)$1	1	65	104	19.9638
(((...(.(((((.((.....)).))))).)))))))))	chr16:87416614-87416890(-)$1	1	13	52	16.1275
((....(((((((.((.....)))))))))...))).))	chr16:89895523-89895774(+)$1	1	185	224	15.6025
((((((((.(((.(........)))).))))))))))))	chr1:44048847-44049217(+)$1	1	27	66	14.0414
(((((..(((((((((......)))))))))..))))))	chr10:424343-424686(-)$1	1	198	237	15.6719
))))))))))))((((((...((((((((((((((((((	chr1:227955289-227955531(+)$1	1	81	120	14.6626
((.(.(((..((.(((......))).)).))).).))))	chr6:16760800-16761040(-)$1	1	31	70	15.3117
(..(((((((((.(((.....))).)))))))))..)))	chr17:17717128-17717452(-)$1	1	232	271	19.7446
((...(((.(.((.((.....)).)).).)))...))))	chr20:62299800-62300044(+)$1	1	69	108	14.4048
..((((((((((((.(((...))).)))))))))))).)	chr19:7972085-7972441(+)$1	1	191	230	18.7077

#PSSM
= : 0.27	c : 0.13	g : 0.11	f : 0.09	i : 0.07	" : 0.07	e : 0.05	d : 0.03	[ : 0.03	# : 0.01	: : 0.01	h : 0.01	! : 0.01	
= : 0.25	c : 0.13	g : 0.11	f : 0.07	" : 0.07	i : 0.05	e : 0.05	! : 0.05	# : 0.03	d : 0.03	[ : 0.03	b : 0.01	h : 0.01	
= : 0.27	[ : 0.11	i : 0.09	f : 0.09	c : 0.07	g : 0.07	# : 0.05	e : 0.05	b : 0.03	! : 0.03	" : 0.03	d : 0.01	
= : 0.29	i : 0.11	f : 0.09	c : 0.07	g : 0.07	# : 0.05	[ : 0.05	a : 0.05	" : 0.05	! : 0.03	b : 0.01	e : 0.01	h : 0.01	
= : 0.27	g : 0.13	i : 0.11	! : 0.11	c : 0.07	f : 0.05	[ : 0.05	" : 0.05	# : 0.03	b : 0.01	$ : 0.01	h : 0.01	
= : 0.27	i : 0.13	c : 0.11	! : 0.11	g : 0.07	b : 0.03	f : 0.03	e : 0.03	" : 0.03	$ : 0.01	d : 0.01	[ : 0.01	] : 0.01	h : 0.01	# : 0.01	
= : 0.27	i : 0.13	c : 0.13	g : 0.09	! : 0.05	b : 0.05	e : 0.05	" : 0.03	[ : 0.03	f : 0.01	$ : 0.01	d : 0.01	h : 0.01	a : 0.01	
= : 0.27	c : 0.19	i : 0.15	g : 0.09	e : 0.05	" : 0.03	! : 0.03	b : 0.03	f : 0.01	$ : 0.01	d : 0.01	h : 0.01	[ : 0.01	
= : 0.21	c : 0.15	[ : 0.09	i : 0.09	g : 0.09	e : 0.07	" : 0.05	d : 0.03	! : 0.03	b : 0.01	$ : 0.01	# : 0.01	h : 0.01	: : 0.01	a : 0.01	
c : 0.17	= : 0.15	g : 0.13	i : 0.11	" : 0.09	e : 0.07	! : 0.07	a : 0.03	b : 0.03	[ : 0.01	# : 0.01	d : 0.01	h : 0.01	
= : 0.15	g : 0.13	i : 0.11	! : 0.11	" : 0.11	c : 0.09	e : 0.07	[ : 0.05	b : 0.05	# : 0.01	d : 0.01	h : 0.01	
" : 0.15	= : 0.13	c : 0.13	! : 0.09	i : 0.07	g : 0.07	a : 0.05	e : 0.05	b : 0.05	# : 0.05	d : 0.05	[ : 0.01	
[ : 0.19	d : 0.17	= : 0.11	" : 0.11	g : 0.07	e : 0.05	i : 0.05	c : 0.05	! : 0.03	# : 0.03	b : 0.03	f : 0.01	
c : 0.33	d : 0.17	" : 0.07	[ : 0.07	i : 0.05	g : 0.05	= : 0.05	b : 0.03	e : 0.03	# : 0.03	a : 0.01	f : 0.01	
c : 0.33	d : 0.17	b : 0.13	g : 0.05	[ : 0.05	e : 0.03	# : 0.03	= : 0.03	i : 0.03	! : 0.01	" : 0.01	q : 0.01	f : 0.01	
c : 0.47	b : 0.13	d : 0.13	g : 0.05	o : 0.05	i : 0.03	! : 0.01	= : 0.01	a : 0.01	q : 0.01	f : 0.01	
n : 0.49	c : 0.17	o : 0.13	b : 0.03	r : 0.01	! : 0.01	l : 0.01	m : 0.01	= : 0.01	i : 0.01	q : 0.01	f : 0.01	
n : 0.49	c : 0.13	o : 0.13	m : 0.07	b : 0.01	r : 0.01	! : 0.01	l : 0.01	= : 0.01	i : 0.01	q : 0.01	f : 0.01	
n : 0.49	l : 0.19	o : 0.13	m : 0.07	r : 0.01	a : 0.01	= : 0.01	q : 0.01	" : 0.01	
n : 0.49	l : 0.19	o : 0.13	m : 0.07	r : 0.01	c : 0.01	= : 0.01	q : 0.01	" : 0.01	
n : 0.49	l : 0.19	o : 0.13	m : 0.05	r : 0.01	c : 0.01	d : 0.01	= : 0.01	q : 0.01	" : 0.01	
c : 0.39	b : 0.15	d : 0.15	o : 0.07	g : 0.05	r : 0.01	l : 0.01	] : 0.01	e : 0.01	a : 0.01	i : 0.01	q : 0.01	= : 0.01	
c : 0.47	b : 0.15	d : 0.15	g : 0.05	a : 0.03	i : 0.03	r : 0.01	e : 0.01	] : 0.01	= : 0.01	
c : 0.52	d : 0.15	] : 0.07	g : 0.07	e : 0.03	i : 0.03	r : 0.01	3 : 0.01	2 : 0.01	= : 0.01	
] : 0.17	c : 0.17	d : 0.13	2 : 0.11	i : 0.07	g : 0.07	b : 0.05	3 : 0.05	e : 0.05	r : 0.01	h : 0.01	= : 0.01	
2 : 0.21	c : 0.17	i : 0.09	e : 0.07	g : 0.07	3 : 0.07	= : 0.07	b : 0.05	] : 0.05	d : 0.01	4 : 0.01	a : 0.01	h : 0.01	
c : 0.15	2 : 0.13	g : 0.13	] : 0.09	i : 0.09	= : 0.09	e : 0.05	3 : 0.05	d : 0.05	b : 0.05	4 : 0.01	h : 0.01	
c : 0.17	g : 0.15	= : 0.15	a : 0.09	i : 0.09	b : 0.09	e : 0.05	d : 0.05	] : 0.01	2 : 0.01	4 : 0.01	3 : 0.01	h : 0.01	
] : 0.21	= : 0.15	e : 0.09	i : 0.09	g : 0.09	c : 0.09	b : 0.05	d : 0.05	4 : 0.03	2 : 0.03	h : 0.01	3 : 0.01	
= : 0.23	i : 0.11	g : 0.11	c : 0.11	e : 0.07	] : 0.07	2 : 0.05	f : 0.05	d : 0.03	a : 0.01	b : 0.01	4 : 0.01	h : 0.01	3 : 0.01	
= : 0.27	i : 0.13	c : 0.13	g : 0.09	] : 0.05	f : 0.05	e : 0.05	3 : 0.05	a : 0.03	2 : 0.01	b : 0.01	4 : 0.01	h : 0.01	
= : 0.29	c : 0.15	i : 0.11	f : 0.09	g : 0.09	e : 0.05	b : 0.03	] : 0.03	3 : 0.03	4 : 0.01	h : 0.01	2 : 0.01	
= : 0.29	i : 0.13	c : 0.11	g : 0.11	f : 0.09	e : 0.07	3 : 0.07	] : 0.03	b : 0.01	2 : 0.01	
= : 0.29	c : 0.11	f : 0.11	i : 0.09	3 : 0.09	] : 0.07	g : 0.07	[ : 0.03	2 : 0.01	e : 0.01	d : 0.01	a : 0.01	
= : 0.29	c : 0.13	f : 0.11	g : 0.09	3 : 0.09	i : 0.07	] : 0.05	2 : 0.03	b : 0.03	e : 0.01	d : 0.01	
= : 0.27	c : 0.17	g : 0.11	i : 0.07	3 : 0.07	f : 0.05	a : 0.03	] : 0.03	b : 0.03	2 : 0.03	e : 0.01	d : 0.01	h : 0.01	
= : 0.29	c : 0.15	g : 0.09	i : 0.07	e : 0.07	] : 0.05	f : 0.05	2 : 0.03	3 : 0.01	a : 0.01	[ : 0.01	C : 0.01	! : 0.01	d : 0.01	h : 0.01	
= : 0.27	c : 0.13	] : 0.13	g : 0.11	i : 0.07	e : 0.05	2 : 0.05	b : 0.03	3 : 0.01	C : 0.01	f : 0.01	! : 0.01	h : 0.01	
= : 0.27	g : 0.13	c : 0.09	b : 0.07	i : 0.05	] : 0.05	e : 0.05	2 : 0.05	a : 0.05	h : 0.03	C : 0.01	f : 0.01	: : 0.01	d : 0.01	

#score	796.5925105007492
#seq	51
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_transcript_m2_run2.txt

#BEAR
fffff[cccqqqqqqqqcccffff	chr6:144765369-144765619(+)$1	250	140	164	15.3643
dddd"""bbqqqqqqqqbb]dddd	chr14:102551183-102551432(-)$1	249	193	217	15.3538
eee"""cccqqqqqqqqccc333e	chr1:160264178-160264463(-)$1	285	53	77	16.8089
!ccc[ddddqqqqqqqqdddd]cc	chr11:65268010-65268221(+)$1	211	92	116	15.7835
ccc[eeeeeqqqqqqqqeeeeecc	chr1:148262156-148262427(-)$1	271	178	202	14.9805
dddd!!cccqqqqqqqqcccdddd	chr2:37438893-37439285(-)$1	392	212	236	16.0670
c[a[eeeeeqqqqqqqqeeeee]a	chr2:230656765-230657049(-)$1	284	96	120	14.8498
b!!ffffffqqqqqqqqffffff2	chr2:27606746-27607058(-)$1	312	261	285	13.9108
eeeee!!bbqqqqqqqqbb]eeee	chr5:179153580-179153802(+)$1	222	139	163	15.7257
eeeeebb[aqqqqqqqqa]bb]ee	chr4:2930060-2930421(+)$1	361	17	41	14.1299
f[eeeee[aqqqqqqqqa]eeeee	chr2:20550314-20550590(-)$1	276	109	133	15.4364
gggg!!cccqqqqqqqqccc22gg	chr6:44217972-44218199(+)$1	227	44	68	16.8529
BBgggggggqqqqqqqqggggggg	chr17:65944236-65944533(+)$1	297	164	188	13.6938
f!!bb[cccqqqqqqqqccc]bb2	chr12:56511165-56511367(+)$1	202	126	150	15.1429
::ccc[cccqqqqqqqqccc]ccc	chr7:127975764-127976084(-)$1	320	2	26	14.7725
bb####cccqqqqqqqqccc22bb	chr16:560589-560897(+)$1	308	260	284	15.4330
:eeeee!!aqqqqqqqqa22eeee	chr2:232326150-232326353(-)$1	203	36	60	14.4906
fff"""cccqqqqqqqqccc4444	chr20:17934561-17934815(-)$1	254	123	147	16.2081
bccc[ddddqqqqqqqqddddccc	chr18:55282772-55283064(-)$1	292	230	254	15.4440
""eeeee[aqqqqqqqqa]eeeee	chr12:10868190-10868466(-)$1	276	112	136	15.4836
#eeeee[bbqqqqqqqqbb]eeee	chr10:120803464-120803699(-)$1	235	186	210	15.5421
!ccc[ddddqqqqqqqqdddd]cc	chr11:65267947-65268159(+)$1	212	155	179	15.7835
b[ccc[cccqqqqqqqqccc]ccc	chr7:23561629-23561878(-)$1	249	2	26	16.4858
bccc!!cccqqqqqqqqccc333c	chrX:132711843-132712174(-)$1	331	287	311	17.0705
ggggggg[aqqqqqqqqa]ggggg	chr2:63058084-63058342(+)$1	258	93	117	15.7676
ccccc"""aqqqqqqqqa333ccc	chr15:69072332-69072573(-)$1	241	104	128	16.2365
b[bb[ddddqqqqqqqqddddbb]	chr1:146756937-146757204(+)$1	267	211	235	14.2896
hh!!eeeeeqqqqqqqqeeeee22	chr8:95541192-95541533(-)$1	341	32	56	14.2329
fffff!!bbqqqqqqqqbb22fff	chrX:53588962-53589281(-)$1	319	97	121	14.9339
++ddddcccqqqqqqqqccc]ddd	chr2:172582023-172582307(+)$1	284	122	146	14.5875
eeeee[cccqqqqqqqqccceeee	chr20:2637683-2637967(+)$1	284	258	282	16.1310
d####ddddqqqqqqqqdddd22d	chr12:76449744-76449995(-)$1	251	144	168	14.9392
eee!!ddddqqqqqqqqddddeee	chr11:65827337-65827582(+)$1	245	152	176	15.4207
::gggggggqqqqqqqqggggggg	chr17:34150980-34151305(+)$1	325	224	248	13.6511
ccc"""cccqqqqqqqqccc]ccc	chrX:133098604-133098952(-)$1	348	194	218	16.7848
dddd!!cccqqqqqqqqccc22dd	chr5:179045044-179045257(-)$1	213	170	194	16.2856
b[bb[ddddqqqqqqqqdddd]bb	chr14:88550337-88550638(+)$1	301	235	259	14.4601
ggggggg[aqqqqqqqqa]ggggg	chr2:232577051-232577258(+)$1	207	51	75	15.7676
!!dddd[bbqqqqqqqqbb333dd	chr2:233681485-233681853(+)$1	368	261	285	15.8777
fffff!!bbqqqqqqqqbb4444f	chr2:153528871-153529202(-)$1	331	66	90	15.3490
eeee[acccqqqqqqqqccc]a]e	chr20:3765563-3765887(-)$1	324	181	205	16.2561
#ffffff[aqqqqqqqqa]fffff	chr14:73577478-73577780(+)$1	302	44	68	14.4171
[dddd!!bbqqqqqqqqbb]dddd	chr3:50099303-50099570(+)$1	267	118	142	15.3550
eeccc[cccqqqqqqqqcccccc:	chr7:26245909-26246200(+)$1	291	142	166	15.0985
hh!!eeeeeqqqqqqqqeeeee22	chr12:76442880-76443133(-)$1	253	190	214	14.2329
22eeeeebbqqqqqqqqbbeeeee	chr19:14199922-14200265(-)$1	343	293	317	14.2349
c[dddd[bbqqqqqqqqbb]dddd	chr11:812657-812912(+)$1	255	49	73	15.2777
eeee[ddddqqqqqqqqdddd]ee	chr2:109397673-109397948(+)$1	275	165	189	15.3900
cc"""ddddqqqqqqqqddddccc	chr9:100777545-100777750(+)$1	205	178	202	15.4708
gggggg[bbqqqqqqqqbbggggg	chr1:27269039-27269310(+)$1	271	91	115	15.7085
###bb"""aqqqqqqqqa333bb3	chr2:242195497-242195713(-)$1	216	112	136	14.9059
ccc!!ddddqqqqqqqqdddd22c	chr17:48821021-48821273(+)$1	252	199	223	15.5730
%%dddd[bbqqqqqqqqbb]dddd	chr1:46072982-46073280(+)$1	298	150	174	13.9469
cc!!eeeeeqqqqqqqqeeeee]c	chr1:235377094-235377443(-)$1	349	215	239	15.0212
"""ffffffqqqqqqqqffffff]	chr17:56083062-56083352(-)$1	290	158	182	14.0316
Feeeeecccqqqqqqqqccc]eee	chr20:30380446-30380731(+)$1	285	144	168	15.7483
gggg!!cccqqqqqqqqccc22gg	chr6:44217945-44218172(+)$1	227	71	95	16.8529
ccc"""cccqqqqqqqqccc333c	chr2:102475425-102475644(+)$1	219	106	130	17.0712
ggggggg[aqqqqqqqqa]ggggg	chr2:232577075-232577323(+)$1	248	27	51	15.7676
hhhhhhcccqqqqqqqqccc]hhh	chr13:107196389-107196609(-)$1	220	90	114	14.8111
"eeeee[bbqqqqqqqqbb]eeee	chr14:21727334-21727607(-)$1	273	159	183	15.5619
:ccc[ddddqqqqqqqqddddccc	chr12:108923825-108924194(-)$1	369	62	86	14.7791
gggg!!cccqqqqqqqqccc22gg	chr6:44217927-44218145(+)$1	218	89	113	16.8529
c[dddd[bbqqqqqqqqbbdddd]	chr17:62523162-62523502(+)$1	340	87	111	15.2194
gggggg[bbqqqqqqqqbb]gggg	chr12:6696448-6696681(-)$1	233	169	193	15.7569
dddd!!cccqqqqqqqqccc22dd	chr6:52137111-52137344(-)$1	233	114	138	16.2856
dddd"""bbqqqqqqqqbb333dd	chrX:122754992-122755283(-)$1	291	6	30	15.8986
hhhhh[cccqqqqqqqqccchhhh	chr3:50102397-50102660(+)$1	263	224	248	14.8515
$ccc[ddddqqqqqqqqdddd]cc	chr2:63264564-63264807(+)$1	243	155	179	15.5529

#otherMatches

#Seq PSSM
GAAGAACAGGUAUGAAACUGUUUU	chr6:144765369-144765619(+)$1	250	140	164	15.3643
GACAAACCUGAAAUUGAAGAUGUU	chr14:102551183-102551432(-)$1	249	193	217	15.3538
UGUUUUGAGCUUGAAUUUUCCUUA	chr1:160264178-160264463(-)$1	285	53	77	16.8089
GUGCAAUUUGGUGAUGAAGGUAGC	chr11:65268010-65268221(+)$1	211	92	116	15.7835
CAGCAAUUGUGGAUGCUUAAUUCU	chr1:148262156-148262427(-)$1	271	178	202	14.9805
AGUAUGGAUGAUGAAGAAUUUGCU	chr2:37438893-37439285(-)$1	392	212	236	16.0670
UGGGUCUUCAGGGUAUGGAAGAGU	chr2:230656765-230657049(-)$1	284	96	120	14.8498
UGAGUCUUGAAAAGCCACAAGGCA	chr2:27606746-27607058(-)$1	312	261	285	13.9108
CUGUCAGUCAAGAGGAGGAAGACA	chr5:179153580-179153802(+)$1	222	139	163	15.7257
CAGCCCCAGACCCAGCCCCGGUGG	chr4:2930060-2930421(+)$1	361	17	41	14.1299
UAGGUGGAGAAAGAAGACAUUGCC	chr2:20550314-20550590(-)$1	276	109	133	15.4364
UUGUUACUUAGUUggagaaggaac	chr6:44217972-44218199(+)$1	227	44	68	16.8529
GGAUCUGCAAAUUGAAGUGCAGGU	chr17:65944236-65944533(+)$1	297	164	188	13.6938
GGCAGAGGUCCAAGUAAACCGCUA	chr12:56511165-56511367(+)$1	202	126	150	15.1429
CAUGAAUCUAAACAUCAGGAAUCA	chr7:127975764-127976084(-)$1	320	2	26	14.7725
GGAGACGGUCCCCAACAGCCCGCC	chr16:560589-560897(+)$1	308	260	284	15.4330
GCCUCAGAGgaugaggacgaugag	chr2:232326150-232326353(-)$1	203	36	60	14.4906
GAAGGGUCUAUGACCAAAGAAGAA	chr20:17934561-17934815(-)$1	254	123	147	16.2081
UACAUCAGAUCAUUAUUUCUGUGU	chr18:55282772-55283064(-)$1	292	230	254	15.4440
AAUAUCUGCGCAGUGUAGGAGAUG	chr12:10868190-10868466(-)$1	276	112	136	15.4836
CAGUGGUUUUAAAAUUUGGUUCAU	chr10:120803464-120803699(-)$1	235	186	210	15.5421
GUGCAAUUUGGUGAUGAAGGUAGC	chr11:65267947-65268159(+)$1	212	155	179	15.7835
GAAUUGUUUGAAUUGGGGAAGAAU	chr7:23561629-23561878(-)$1	249	2	26	16.4858
CAGCCAGGUCACUAGGCACCCAUG	chrX:132711843-132712174(-)$1	331	287	311	17.0705
UAGUUUGAUGAGUAUGAAGCAGGC	chr2:63058084-63058342(+)$1	258	93	117	15.7676
GUCAGAAGCGAAAACGAGAACCUG	chr15:69072332-69072573(-)$1	241	104	128	16.2365
CUGAACAUAAGAAAAAGUAUGUCU	chr1:146756937-146757204(+)$1	267	211	235	14.2896
AUUCUGUUCCCCAGGAAGGGCAAU	chr8:95541192-95541533(-)$1	341	32	56	14.2329
CUGAGGAUGAGGAGGAGCACACUC	chrX:53588962-53589281(-)$1	319	97	121	14.9339
AUGUAGUGGCUCCUAAACCACCUA	chr2:172582023-172582307(+)$1	284	122	146	14.5875
AAGCUGUGGUCUUGAGUCCAGGCU	chr20:2637683-2637967(+)$1	284	258	282	16.1310
GUUUUUAAGAAUGUUGACUUGCUC	chr12:76449744-76449995(-)$1	251	144	168	14.9392
UGGCAGGGCUCAGACCUGCCCCCG	chr11:65827337-65827582(+)$1	245	152	176	15.4207
AAGUAUGUAGAUAAAGAUGCGUAC	chr17:34150980-34151305(+)$1	325	224	248	13.6511
AGAGGCCUGAAACAAGACAgaucu	chrX:133098604-133098952(-)$1	348	194	218	16.7848
UUGAUUGAUUGUACUUUGUCUUUC	chr5:179045044-179045257(-)$1	213	170	194	16.2856
CUUACACACAACCUGCAGUGUUUA	chr14:88550337-88550638(+)$1	301	235	259	14.4601
AGCCACAGUAGGAGGGAAGUGUGG	chr2:232577051-232577258(+)$1	207	51	75	15.7676
GUAUCUGGGAACUCUGACCAUAGG	chr2:233681485-233681853(+)$1	368	261	285	15.8777
GCUUUGGCAAAGUUAAGUGAAAAA	chr2:153528871-153529202(-)$1	331	66	90	15.3490
CUGGGCCCAGGGAGUAGUGGAGGC	chr20:3765563-3765887(-)$1	324	181	205	16.2561
AUUGUUUGGGUUUUAGAUGGAACA	chr14:73577478-73577780(+)$1	302	44	68	14.4171
GGAUUACCUGAGGAAGAAGAGAUC	chr3:50099303-50099570(+)$1	267	118	142	15.3550
UUGUCGUGGAAAAAGUACUAGAUC	chr7:26245909-26246200(+)$1	291	142	166	15.0985
GAUAGCUAAAGUAAGAGUUGGUGU	chr12:76442880-76443133(-)$1	253	190	214	14.2329
ACCAGGGCCAGGAUGAAGGGCGGG	chr19:14199922-14200265(-)$1	343	293	317	14.2349
GGACUGGCCUGGCACUUGGGCAGU	chr11:812657-812912(+)$1	255	49	73	15.2777
UUCAUAAUGAAGAUAUCCAUUUUG	chr2:109397673-109397948(+)$1	275	165	189	15.3900
GACCUGCAGAAACAGAACUGUUCA	chr9:100777545-100777750(+)$1	205	178	202	15.4708
GUGUCCCUGAUUGUAAGCAGGAUA	chr1:27269039-27269310(+)$1	271	91	115	15.7085
AAGGUACACGAUUUAGAGGAGGCA	chr2:242195497-242195713(-)$1	216	112	136	14.9059
AGGAACUCAUUUUUAUUUGAGAAC	chr17:48821021-48821273(+)$1	252	199	223	15.5730
GAAGAUAUGGAUAUAAGUAAAUCU	chr1:46072982-46073280(+)$1	298	150	174	13.9469
UUGAGUGCUAUCCACCAGGCAUGA	chr1:235377094-235377443(-)$1	349	215	239	15.0212
AAACUGGAUAACACUAAGUUUAGA	chr17:56083062-56083352(-)$1	290	158	182	14.0316
UGCAUUGAAGAACAGAAUUCGAAU	chr20:30380446-30380731(+)$1	285	144	168	15.7483
UUGUUACUUAGUUggagaaggaac	chr6:44217945-44218172(+)$1	227	71	95	16.8529
GGCCAUGUUACUGGUAAAGCCCCG	chr2:102475425-102475644(+)$1	219	106	130	17.0712
AGCCACAGUAGGAGGGAAGUGUGG	chr2:232577075-232577323(+)$1	248	27	51	15.7676
UUAACUUUCAGGCCGAAGAACAGU	chr13:107196389-107196609(-)$1	220	90	114	14.8111
ACCAAAAUUAGAACAUGGAAUUUG	chr14:21727334-21727607(-)$1	273	159	183	15.5619
UGUAAUUGCCACAUCCAGCGAUGC	chr12:108923825-108924194(-)$1	369	62	86	14.7791
UUGUUACUUAGUUggagaaggaac	chr6:44217927-44218145(+)$1	218	89	113	16.8529
GAUCGGAUUAAAGAAAAGACUGAC	chr17:62523162-62523502(+)$1	340	87	111	15.2194
UGGUCUGAAAAUUGGCAUUGAGAC	chr12:6696448-6696681(-)$1	233	169	193	15.7569
GCAUUCAUGAAGAAGUACAUCCAU	chr6:52137111-52137344(-)$1	233	114	138	16.2856
AGACCAAGGAAAGAACGCCGAAGU	chrX:122754992-122755283(-)$1	291	6	30	15.8986
GGAAGCGCAAAGGCUGAUGCCUUC	chr3:50102397-50102660(+)$1	263	224	248	14.8515
GUUAAUAAGAAAAAUGCCUUAAUA	chr2:63264564-63264807(+)$1	243	155	179	15.5529

#DB
(((((.(((........)))))))	chr6:144765369-144765619(+)$1	1	140	164	15.3643
((((...((........)).))))	chr14:102551183-102551432(-)$1	1	193	217	15.3538
(((...(((........)))...)	chr1:160264178-160264463(-)$1	1	53	77	16.8089
.(((.((((........)))).))	chr11:65268010-65268221(+)$1	1	92	116	15.7835
(((.(((((........)))))))	chr1:148262156-148262427(-)$1	1	178	202	14.9805
((((..(((........)))))))	chr2:37438893-37439285(-)$1	1	212	236	16.0670
(.(.(((((........))))).)	chr2:230656765-230657049(-)$1	1	96	120	14.8498
(..((((((........)))))).	chr2:27606746-27607058(-)$1	1	261	285	13.9108
(((((..((........)).))))	chr5:179153580-179153802(+)$1	1	139	163	15.7257
(((((((.(........).)).))	chr4:2930060-2930421(+)$1	1	17	41	14.1299
(.(((((.(........).)))))	chr2:20550314-20550590(-)$1	1	109	133	15.4364
((((..(((........)))..))	chr6:44217972-44218199(+)$1	1	44	68	16.8529
(((((((((........)))))))	chr17:65944236-65944533(+)$1	1	164	188	13.6938
(..((.(((........))).)).	chr12:56511165-56511367(+)$1	1	126	150	15.1429
..(((.(((........))).)))	chr7:127975764-127976084(-)$1	1	2	26	14.7725
((....(((........)))..))	chr16:560589-560897(+)$1	1	260	284	15.4330
.(((((..(........)..))))	chr2:232326150-232326353(-)$1	1	36	60	14.4906
(((...(((........)))....	chr20:17934561-17934815(-)$1	1	123	147	16.2081
((((.((((........)))))))	chr18:55282772-55283064(-)$1	1	230	254	15.4440
..(((((.(........).)))))	chr12:10868190-10868466(-)$1	1	112	136	15.4836
.(((((.((........)).))))	chr10:120803464-120803699(-)$1	1	186	210	15.5421
.(((.((((........)))).))	chr11:65267947-65268159(+)$1	1	155	179	15.7835
(.(((.(((........))).)))	chr7:23561629-23561878(-)$1	1	2	26	16.4858
((((..(((........)))...)	chrX:132711843-132712174(-)$1	1	287	311	17.0705
(((((((.(........).)))))	chr2:63058084-63058342(+)$1	1	93	117	15.7676
))(((...(........)...)))	chr15:69072332-69072573(-)$1	1	104	128	16.2365
(.((.((((........)))))).	chr1:146756937-146757204(+)$1	1	211	235	14.2896
((..(((((........)))))..	chr8:95541192-95541533(-)$1	1	32	56	14.2329
(((((..((........))..)))	chrX:53588962-53589281(-)$1	1	97	121	14.9339
..(((((((........))).)))	chr2:172582023-172582307(+)$1	1	122	146	14.5875
(((((.(((........)))))))	chr20:2637683-2637967(+)$1	1	258	282	16.1310
(....((((........))))..)	chr12:76449744-76449995(-)$1	1	144	168	14.9392
(((..((((........)))))))	chr11:65827337-65827582(+)$1	1	152	176	15.4207
..(((((((........)))))))	chr17:34150980-34151305(+)$1	1	224	248	13.6511
(((...(((........))).)))	chrX:133098604-133098952(-)$1	1	194	218	16.7848
((((..(((........)))..))	chr5:179045044-179045257(-)$1	1	170	194	16.2856
(.((.((((........)))).))	chr14:88550337-88550638(+)$1	1	235	259	14.4601
(((((((.(........).)))))	chr2:232577051-232577258(+)$1	1	51	75	15.7676
..((((.((........))...))	chr2:233681485-233681853(+)$1	1	261	285	15.8777
(((((..((........))....)	chr2:153528871-153529202(-)$1	1	66	90	15.3490
((((.((((........))).).)	chr20:3765563-3765887(-)$1	1	181	205	16.2561
.((((((.(........).)))))	chr14:73577478-73577780(+)$1	1	44	68	14.4171
.((((..((........)).))))	chr3:50099303-50099570(+)$1	1	118	142	15.3550
))(((.(((........)))))).	chr7:26245909-26246200(+)$1	1	142	166	15.0985
((..(((((........)))))..	chr12:76442880-76443133(-)$1	1	190	214	14.2329
..)))))((........))(((((	chr19:14199922-14200265(-)$1	1	293	317	14.2349
(.((((.((........)).))))	chr11:812657-812912(+)$1	1	49	73	15.2777
((((.((((........)))).))	chr2:109397673-109397948(+)$1	1	165	189	15.3900
((...((((........)))))))	chr9:100777545-100777750(+)$1	1	178	202	15.4708
((((((.((........)))))))	chr1:27269039-27269310(+)$1	1	91	115	15.7085
...((...(........)...)).	chr2:242195497-242195713(-)$1	1	112	136	14.9059
(((..((((........))))..)	chr17:48821021-48821273(+)$1	1	199	223	15.5730
..((((.((........)).))))	chr1:46072982-46073280(+)$1	1	150	174	13.9469
((..(((((........))))).)	chr1:235377094-235377443(-)$1	1	215	239	15.0212
...((((((........)))))).	chr17:56083062-56083352(-)$1	1	158	182	14.0316
(((((((((........))).)))	chr20:30380446-30380731(+)$1	1	144	168	15.7483
((((..(((........)))..))	chr6:44217945-44218172(+)$1	1	71	95	16.8529
(((...(((........)))...)	chr2:102475425-102475644(+)$1	1	106	130	17.0712
(((((((.(........).)))))	chr2:232577075-232577323(+)$1	1	27	51	15.7676
(((((((((........))).)))	chr13:107196389-107196609(-)$1	1	90	114	14.8111
.(((((.((........)).))))	chr14:21727334-21727607(-)$1	1	159	183	15.5619
.(((.((((........)))))))	chr12:108923825-108924194(-)$1	1	62	86	14.7791
((((..(((........)))..))	chr6:44217927-44218145(+)$1	1	89	113	16.8529
(.((((.((........)))))).	chr17:62523162-62523502(+)$1	1	87	111	15.2194
((((((.((........)).))))	chr12:6696448-6696681(-)$1	1	169	193	15.7569
((((..(((........)))..))	chr6:52137111-52137344(-)$1	1	114	138	16.2856
((((...((........))...))	chrX:122754992-122755283(-)$1	1	6	30	15.8986
(((((.(((........)))))))	chr3:50102397-50102660(+)$1	1	224	248	14.8515
.(((.((((........)))).))	chr2:63264564-63264807(+)$1	1	155	179	15.5529

#PSSM
c : 0.14	e : 0.11	g : 0.11	b : 0.10	f : 0.08	d : 0.08	: : 0.05	h : 0.05	! : 0.04	" : 0.04	# : 0.04	B : 0.01	+ : 0.01	[ : 0.01	2 : 0.01	% : 0.01	F : 0.01	$ : 0.01	
c : 0.18	e : 0.17	g : 0.11	[ : 0.10	d : 0.08	f : 0.07	h : 0.05	! : 0.04	: : 0.02	" : 0.02	# : 0.02	B : 0.01	b : 0.01	+ : 0.01	2 : 0.01	% : 0.01	
e : 0.20	c : 0.20	d : 0.15	g : 0.14	f : 0.07	! : 0.07	# : 0.04	b : 0.02	" : 0.02	h : 0.02	a : 0.01	
e : 0.17	d : 0.15	c : 0.14	g : 0.14	f : 0.08	" : 0.07	! : 0.07	b : 0.05	[ : 0.02	# : 0.02	h : 0.02	
e : 0.21	[ : 0.13	! : 0.13	" : 0.10	g : 0.10	f : 0.08	d : 0.08	c : 0.05	b : 0.02	# : 0.02	h : 0.02	
d : 0.24	e : 0.17	! : 0.15	" : 0.11	[ : 0.10	g : 0.10	f : 0.04	b : 0.01	# : 0.01	a : 0.01	h : 0.01	
c : 0.33	d : 0.17	e : 0.11	[ : 0.11	! : 0.07	g : 0.07	" : 0.05	f : 0.04	b : 0.01	
c : 0.33	b : 0.21	d : 0.17	[ : 0.10	e : 0.07	f : 0.02	g : 0.02	" : 0.02	! : 0.01	
c : 0.33	b : 0.21	d : 0.17	a : 0.14	e : 0.07	f : 0.02	g : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.33	b : 0.21	d : 0.17	a : 0.14	e : 0.07	f : 0.02	g : 0.02	
c : 0.33	b : 0.21	d : 0.17	] : 0.10	e : 0.07	f : 0.02	g : 0.02	3 : 0.02	2 : 0.01	
c : 0.33	d : 0.18	] : 0.11	e : 0.11	g : 0.08	3 : 0.05	f : 0.04	2 : 0.02	b : 0.01	4 : 0.01	
d : 0.26	e : 0.18	] : 0.11	3 : 0.10	2 : 0.10	g : 0.10	f : 0.05	4 : 0.02	b : 0.01	c : 0.01	h : 0.01	
e : 0.21	2 : 0.11	c : 0.11	d : 0.10	g : 0.10	] : 0.08	f : 0.07	3 : 0.07	b : 0.04	4 : 0.02	h : 0.02	a : 0.01	
c : 0.17	e : 0.17	d : 0.15	g : 0.14	f : 0.07	b : 0.07	2 : 0.05	3 : 0.04	] : 0.04	4 : 0.02	h : 0.02	
c : 0.21	e : 0.20	d : 0.15	g : 0.14	f : 0.05	2 : 0.05	] : 0.04	b : 0.02	h : 0.02	a : 0.01	4 : 0.01	: : 0.01	3 : 0.01	

#score	1061.4622485875568
#seq	69
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_UTR_m1_run2.txt

#BEAR
eee[bb[eeeee[a[cccooooooccc]aeeeeebb]ee	chr20:61472028-61472250(+)$1	222	127	166	12.1866
###dddd[ccc!!ddddoooooodddd22ccc4444ddd	chr16:89842050-89842312(-)$1	262	169	208	13.4986
gggg####iiiiiiiii[aooooooa]iiiiiiiii333	chr15:93570717-93571078(+)$1	361	190	229	15.4778
::bbccceeeee"""cccnnnnnccc333eeeee]ccc2	chr7:99564446-99564774(-)$1	328	201	240	12.7218
b[dddd[gggggggddddnnnnndddd333ggggggg]d	chr20:61920925-61921174(+)$1	249	25	64	14.0781
fffgggggggeeeee!!bbmmmmbb333eeeee4444gg	chr14:103576264-103576530(+)$1	266	193	232	11.8877
iiiiiii"""bb"""cccnnnnnccc333bbiiiiiiii	chr19:42411156-42411458(+)$1	302	82	121	17.6941
""bb[eeeee"""ddddoooooodddd4444eeeee]bb	chr17:74730216-74730536(-)$1	320	40	79	12.8244
iiiiiiii[dddd[ccc[ammmma]cccdddd4444iii	chr17:61909959-61910218(-)$1	259	2	41	12.9518
))))))a[==========nnnnn==========]aeeee	chr20:62330851-62331139(-)$1	288	76	115	12.3715
[ggggggg[a[eeeeeooooooeeeee333a]ggggggg	chr1:52260067-52260373(-)$1	306	19	58	13.2097
b[ccc[ggggggg!!a[bbmmmmbb]a22gggggggccc	chr16:31200989-31201215(+)$1	226	109	148	13.8603
ccc!!ccc[bb!!ddddoooooodddd22bb]ccc22cc	chr3:184103733-184103940(+)$1	207	34	73	13.4511
iiiiii!!bb!!a[bb[bbmmmmbbbb]a22bb]iiiii	chr9:117073429-117073671(+)$1	242	84	123	12.0367
$$==========bb[cccoooooocccbb]=========	chrX:54957104-54957454(+)$1	350	166	205	16.3939
DDD============[ccclllccc]============c	chr9:117004393-117004610(+)$1	217	115	154	14.1316
ffff===========[cccmmmmccc22===========	chr3:184102223-184102462(+)$1	239	128	167	17.3971
fffff[eeeee"""cccooooooccc333eeeeefffff	chr3:184104411-184104643(+)$1	232	172	211	14.0190
eeeeeiiiiiiiii####cccooooooccciiiiiiiii	chr16:87367437-87367757(-)$1	320	279	318	12.0287
g:eeeee!!ccc####cccmmmmccc4444ccc]eeeee	chr11:10529789-10530051(-)$1	262	182	221	13.5693
lccciiiiiiiii!!cccnnnnnccc666666iiiiiii	chr20:60884345-60884595(-)$1	250	70	109	13.9720
ddcccbb!!ccc"""ddddllldddd333ccc]bb====	chr17:74078959-74079250(-)$1	291	154	193	14.6063
d[dddd[a!!gggggggaooooooa]ggggggg22a]dd	chr2:42989712-42990013(-)$1	301	4	43	12.9472
"=========="""fffffflllffffff]=========	chr17:73823473-73823751(-)$1	278	52	91	15.3517
ccc[a[cccccc[a[cccnnnnnccc]a]ccc]cccacc	chr7:1028696-1028998(+)$1	302	159	198	14.7702
$dddd"""ffffffcccooooooccc]ffffff333ddd	chr16:31202048-31202261(+)$1	213	157	196	12.2321
[ggggggg$$$$$bb[cccnnnnnccc]bb4444ggggg	chr10:99222313-99222539(-)$1	226	35	74	13.6939
b[bb[ggggggg[ccc[bbmmmmbb]ccc]ggggggg]b	chr16:70696096-70696337(-)$1	241	170	209	12.5138
ggggggg!!ccc"""ddddllldddd22ccc333ggggg	chr17:61908794-61909077(+)$1	283	97	136	15.6468
''''ggggggg####ddddmmmmdddd]ggggggg22ii	chr15:75648143-75648413(-)$1	270	187	226	12.3833
[ccc"""ccc[bb"""cccmmmmccc333bb]ccc333c	chr3:50107814-50108051(+)$1	237	147	186	15.4568
cc[a[ccc[ccc[ccccccmmmmccc333ccccccccc]	chr21:45746730-45747092(+)$1	362	279	318	15.1485
:==========####ddddmmmmdddd==========:c	chr20:62590937-62591212(-)$1	275	156	195	15.0376
ccc[a[ccc"""ffffffnnnnnffffffccc]a]ccc]	chr9:117052414-117052636(+)$1	222	85	124	12.2646
dd"""dddd"""a[a[cccmmmmccc]a]a]dddd22dd	chr12:57492187-57492430(-)$1	243	103	142	12.5290
"============"""ddddllldddd============	chr7:44609332-44609576(-)$1	244	172	211	17.1334
GG===========!!ddddmmmmdddd22==========	chr11:47281235-47281631(+)$1	396	224	263	16.2770
g$$$$$ccc[a!!ddddnnnnndddd22a]ccc]ggggg	chr17:80399994-80400299(+)$1	305	10	49	12.6664
ggggggbb[bb[a!!cccnnnnnccc22a]bb22bb22g	chr1:1323237-1323454(-)$1	217	41	80	13.6029
a[ccc============rrrrrrrrr============2	chr9:130647618-130647916(-)$1	298	140	179	14.7185
gg[ccc[a"""ccc!!cccnnnnnccc]ccc333a]ccc	chr11:65306757-65307014(-)$1	257	82	121	15.0886
ddddd!!gggggggcccooooooccc]ggggggg]dddd	chr19:46320079-46320333(-)$1	254	23	62	13.6047
:=============!!cccmmmmccc22===========	chr10:70551061-70551347(+)$1	286	200	239	17.6333
ee[ggggggga"""ddddnnnnndddd333a]ggggggg	chr14:24613306-24613521(-)$1	215	142	181	16.0042
ggg"""a[==========aooooooa]==========]a	chr19:7978263-7978574(+)$1	311	143	182	16.7711
[ccc!!ffffff"""a[bbmmmmbb]a]ffffff]cccf	chr11:77602264-77602505(-)$1	241	38	77	12.1405
========"""dddd!!ccclllccc333dddd22====	chr21:46914361-46914585(+)$1	224	100	139	15.3746
f[eeeee"""a[ffffffooooooffffff]a333eeee	chr9:139296393-139296650(-)$1	257	12	51	11.7573
[==========$$$$$ccclllccc4444==========	chr19:3958506-3958761(-)$1	255	146	185	17.8934
iiiiiii$$$$$ccc[cccmmmmcccccciiiiiiiii:	chr3:184105069-184105319(+)$1	250	41	80	13.6461
ggggggg[bbccc!!cccnnnnnccc22ccc]bb]gggg	chr3:49753442-49753708(+)$1	266	114	153	14.9945
ee[ggggggga"""ddddnnnnndddd333a]ggggggg	chr14:24613321-24613560(-)$1	239	181	220	16.0042
c[bb!!dddd"""ccccccnnnnnccc]ccc333dddd2	chr9:117026577-117026787(+)$1	210	132	171	13.4626
d[bb[============ssssssssss============	chr16:31202220-31202467(+)$1	247	16	55	12.5843

#otherMatches

#Seq PSSM
GGCAGGCGGGUGACGUCCAGGAGAGGGAGCGCCCCUGGC	chr20:61472028-61472250(+)$1	222	127	166	12.1866
UCCUGGGCCGCUUGUCCACUCUGGGACUUGUGCUUUUCC	chr16:89842050-89842312(-)$1	262	169	208	13.4986
CAGCACCAGCGGUCUUCCGGCUCCUCUGAGGGCUGCCAC	chr15:93570717-93571078(+)$1	361	190	229	15.4778
UGCCUGAUGUGGGAGCUGAACCACAGAAAUCACAGUCAA	chr7:99564446-99564774(-)$1	328	201	240	12.7218
GUGUCUGGGCCACCUUCAGAAGGUGGAUGUGGUGGCCGA	chr20:61920925-61921174(+)$1	249	25	64	14.0781
AGCUGCGGCCGGGGCGGCGGGUGCGGAGGCCCCUCGGGG	chr14:103576264-103576530(+)$1	266	193	232	11.8877
UUCUCCUACAUCCCCCAGGCCUUUUGCAAGAAGGAGAGG	chr19:42411156-42411458(+)$1	302	82	121	17.6941
AAAAUGCCUGACAACUGCACUUCCAGUCACCCGGGCCUU	chr17:74730216-74730536(-)$1	320	40	79	12.8244
GGCUGGGGUGAGGAGUGUCUGCUGUCACCCUCUACUCUC	chr17:61909959-61910218(-)$1	259	2	41	12.9518
CAGCCAGGAGAGAACCUCCCGGAGGGGUUCUCUGUGGGG	chr20:62330851-62331139(-)$1	288	76	115	12.3715
AUUGAAAAGUUAGAAGGCCUAGCUUCUUAUAGUUUUUGG	chr1:52260067-52260373(-)$1	306	19	58	13.2097
UAUUGACUGGUUUGAUGGUAUGUAUGAGAAGGCUGGCAG	chr16:31200989-31201215(+)$1	226	109	148	13.8603
gaacuggggacaguaggcucagcccuAAAGUGCCUUAUU	chr3:184103733-184103940(+)$1	207	34	73	13.4511
CGUGGGAAGCGGCGAGAUCCUCGGGCUGGGGGUGCCCAC	chr9:117073429-117073671(+)$1	242	84	123	12.0367
AGCACUGGUGUUGGCUUCUGCAGUGGACCAAGCACCAGU	chrX:54957104-54957454(+)$1	350	166	205	16.3939
GAGGUGAGUGUCACUGGCCUGGGGUAGGUGGCAUUCAUG	chr9:117004393-117004610(+)$1	217	115	154	14.1316
GCCCGAGGGGCUCAUAUGCUGCUGCAGAAUGAGCUCUUC	chr3:184102223-184102462(+)$1	239	128	167	17.3971
GAGCAAGGGGCCUGGACACUCCCGUCAAUGCCUCUGCUC	chr3:184104411-184104643(+)$1	232	172	211	14.0190
GGGUACUGGGGCCUGAAGGUGGGACAGCAUGGGCUUCAG	chr16:87367437-87367757(-)$1	320	279	318	12.0287
GCACCGCCUGCCCAGUGACAUGCGUUUaacggccgcggu	chr11:10529789-10530051(-)$1	262	182	221	13.5693
UGGCCGUGCAGCCCUGGCCCCCCGCCUACUGCGGCUGCA	chr20:60884345-60884595(-)$1	250	70	109	13.9720
CUCAGGCCCCUGUCUCUGGCCCCCAGCCUCAGUGCCUCU	chr17:74078959-74079250(-)$1	291	154	193	14.6063
CUGCCGCGCUCUGGCCUGGAGGGACAAGGCCAGCACACG	chr2:42989712-42990013(-)$1	301	4	43	12.9472
UCCUGGCCUUCCUGUUCCAGCCACUGGGGUGGGGGCCAG	chr17:73823473-73823751(-)$1	278	52	91	15.3517
GCGUGCGAGCCCUGCACCCCCCAGGUCCUGGGACUCCUG	chr7:1028696-1028998(+)$1	302	159	198	14.7702
AUCCUUAAUUUUUCAGCGGGGAGGCUCGGGGAACAUAGG	chr16:31202048-31202261(+)$1	213	157	196	12.2321
CCAAUCAUUCAUUUCUUGAACCCGUCAUGGUCUUGUGAU	chr10:99222313-99222539(-)$1	226	35	74	13.6939
CAUCGUGGCCCCAGGGCAGGGUCCUACCUGGGGGUCAGG	chr16:70696096-70696337(-)$1	241	170	209	12.5138
UUCUCGGAAGAUGAACCUGACCCGGGGGAUCAACCUGAG	chr17:61908794-61909077(+)$1	283	97	136	15.6468
GUUUGUAGAAGGCUCUGGGGACUCCUAAUUUCUGCUUCC	chr15:75648143-75648413(-)$1	270	187	226	12.3833
UAAGUACUCCAGGGAAACUGACAGGUAAGCCAGGAACUC	chr3:50107814-50108051(+)$1	237	147	186	15.4568
GUGUUUGGAGGCUGCUGCCCCCUGGCUUUGGCGCCCCAU	chr21:45746730-45747092(+)$1	362	279	318	15.1485
AGGGCACACCUGGGUUGGGGCUCCCCAAGGUGUGCCCAG	chr20:62590937-62591212(-)$1	275	156	195	15.0376
CCAGGGCCUGCAGGGGCUGCCAGGGCCCCGGGGCGUGGU	chr9:117052414-117052636(+)$1	222	85	124	12.2646
CCCCAGAAGAAUCAGUCAACGUGUUGUCAGCCUUCCAGG	chr12:57492187-57492430(-)$1	243	103	142	12.5290
AGAGCCUGGCUCUUGUGGUCCUGGGCCAGGGUCAGGCUU	chr7:44609332-44609576(-)$1	244	172	211	17.1334
AGGGGUGGGGCUGGAGGCUGCAGAGCCCACAGCCCUGCU	chr11:47281235-47281631(+)$1	396	224	263	16.2770
CAAGUCCCAAGUGUGCAGACUGUGCGUUCAUGGCGCCCU	chr17:80399994-80400299(+)$1	305	10	49	12.6664
CCUUCCCCACUGUCUGUGAAGAACACCAAGAGGAGGCUG	chr1:1323237-1323454(-)$1	217	41	80	13.6029
CUGCUCUUCUGGAGCCUGGAAGGAAAGGGCUUCAGGAGG	chr9:130647618-130647916(-)$1	298	140	179	14.7185
AGAUGAGGACAGUUCAGAGGAGGAUUCAGACGAGUGUCG	chr11:65306757-65307014(-)$1	257	82	121	15.0886
AAGGUCUUUCUCCCAGUGUCAAGGCUCGGGGGGAUGCCU	chr19:46320079-46320333(-)$1	254	23	62	13.6047
GGAUGAACUUUGUUAUAGUUUUAACUCCAAUAAAGUUCA	chr10:70551061-70551347(+)$1	286	200	239	17.6333
GCAUUGGGGGCAGUAGGAGCAUUUCUUUGGGACCCCCAG	chr14:24613306-24613521(-)$1	215	142	181	16.0042
gggcugagggugggggugcgagguggUCACUCCCAUCGU	chr19:7978263-7978574(+)$1	311	143	182	16.7711
GUCAGACAACCCUUUGCGGUUUACCUCUGGGUUGGUGGU	chr11:77602264-77602505(-)$1	241	38	77	12.1405
GAGCCGGGCUUCCGAGGACCCCCGGUAAGUCGGUCCCUG	chr21:46914361-46914585(+)$1	224	100	139	15.3746
CUGUCCAGAUGUGCCUCUUUGGCUGGGGGUUCUGGUGGA	chr9:139296393-139296650(-)$1	257	12	51	11.7573
GCUUGGUGGGGUCUUCCACUGUGUGCCCUUCUCGCCGAG	chr19:3958506-3958761(-)$1	255	146	185	17.8934
GCCCAGCUGAUGAGCUCAUACUAAUGGCUGCUGGGCCCU	chr3:184105069-184105319(+)$1	250	41	80	13.6461
GGGUGACAGCUGAGAGGAACCUGUUUGAUCGUGUGGUCA	chr3:49753442-49753708(+)$1	266	114	153	14.9945
GCAUUGGGGGCAGUAGGAGCAUUUCUUUGGGACCCCCAG	chr14:24613321-24613560(-)$1	239	181	220	16.0042
CCUUCCUCACUCCUCCGACACUGGGUCAGGAAUCGUGAA	chr9:117026577-117026787(+)$1	210	132	171	13.4626
AACAUAGGGGAAUGGGAAUAUGAUAGAUCUUGUUUCUUU	chr16:31202220-31202467(+)$1	247	16	55	12.5843

#DB
(((.((.(((((.(.(((......))).)))))))).))	chr20:61472028-61472250(+)$1	1	127	166	12.1866
...((((.(((..((((......))))..)))....)))	chr16:89842050-89842312(-)$1	1	169	208	13.4986
((((....(((((((((.(......).)))))))))...	chr15:93570717-93571078(+)$1	1	190	229	15.4778
..((((((((((...(((.....)))...))))).))).	chr7:99564446-99564774(-)$1	1	201	240	12.7218
(.((((.(((((((((((.....))))...))))))).)	chr20:61920925-61921174(+)$1	1	25	64	14.0781
(((((((((((((((..((....))...)))))....))	chr14:103576264-103576530(+)$1	1	193	232	11.8877
(((((((...((...(((.....)))...))))))))))	chr19:42411156-42411458(+)$1	1	82	121	17.6941
..((.(((((...((((......))))....))))).))	chr17:74730216-74730536(-)$1	1	40	79	12.8244
((((((((.((((.(((.(....).)))))))....)))	chr17:61909959-61910218(-)$1	1	2	41	12.9518
......(.((((((((((.....)))))))))).)))))	chr20:62330851-62331139(-)$1	1	76	115	12.3715
.(((((((.(.(((((......)))))...).)))))))	chr1:52260067-52260373(-)$1	1	19	58	13.2097
(.(((.(((((((..(.((....)).)..))))))))))	chr16:31200989-31201215(+)$1	1	109	148	13.8603
(((..(((.((..((((......))))..)).)))..))	chr3:184103733-184103940(+)$1	1	34	73	13.4511
((((((..((..(.((.((....)))).)..)).)))))	chr9:117073429-117073671(+)$1	1	84	123	12.0367
..((((((((((((.(((......))))).)))))))))	chrX:54957104-54957454(+)$1	1	166	205	16.3939
)))((((((((((((.(((...))).))))))))))))(	chr9:117004393-117004610(+)$1	1	115	154	14.1316
(((((((((((((((.(((....)))..)))))))))))	chr3:184102223-184102462(+)$1	1	128	167	17.3971
(((((.(((((...(((......)))...))))))))))	chr3:184104411-184104643(+)$1	1	172	211	14.0190
)))))(((((((((....(((......))))))))))))	chr16:87367437-87367757(-)$1	1	279	318	12.0287
).(((((..(((....(((....)))....))).)))))	chr11:10529789-10530051(-)$1	1	182	221	13.5693
.)))(((((((((..(((.....)))......)))))))	chr20:60884345-60884595(-)$1	1	70	109	13.9720
)))))((..(((...((((...))))...))).))((((	chr17:74078959-74079250(-)$1	1	154	193	14.6063
(.((((.(..((((((((......).)))))))..).))	chr2:42989712-42990013(-)$1	1	4	43	12.9472
.((((((((((...((((((...)))))).)))))))))	chr17:73823473-73823751(-)$1	1	52	91	15.3517
(((.(.((((((.(.(((.....))).).))).))))))	chr7:1028696-1028998(+)$1	1	159	198	14.7702
.((((...(((((((((......))).))))))...)))	chr16:31202048-31202261(+)$1	1	157	196	12.2321
.(((((((.....((.(((.....))).))....)))))	chr10:99222313-99222539(-)$1	1	35	74	13.6939
(.((.(((((((.(((.((....)).))).))))))).)	chr16:70696096-70696337(-)$1	1	170	209	12.5138
(((((((..(((...((((...))))..)))...)))))	chr17:61908794-61909077(+)$1	1	97	136	15.6468
....(((((((....((((....)))).)))))))..))	chr15:75648143-75648413(-)$1	1	187	226	12.3833
.(((...(((.((...(((....)))...)).)))...)	chr3:50107814-50108051(+)$1	1	147	186	15.4568
((.(.(((.(((.((((((....)))...))))))))).	chr21:45746730-45747092(+)$1	1	279	318	15.1485
.((((((((((....((((....)))))))))))))).(	chr20:62590937-62591212(-)$1	1	156	195	15.0376
(((.(.(((...((((((.....))))))))).).))).	chr9:117052414-117052636(+)$1	1	85	124	12.2646
((...((((...(.(.(((....))).).).))))..))	chr12:57492187-57492430(-)$1	1	103	142	12.5290
.((((((((((((...((((...))))))))))))))))	chr7:44609332-44609576(-)$1	1	172	211	17.1334
))(((((((((((..((((....))))..))))))))))	chr11:47281235-47281631(+)$1	1	224	263	16.2770
(.....(((.(..((((.....))))..).))).)))))	chr17:80399994-80400299(+)$1	1	10	49	12.6664
((((((((.((.(..(((.....)))..).))..))..)	chr1:1323237-1323454(-)$1	1	41	80	13.6029
(.(((((((((((((((.........)))))))))))).	chr9:130647618-130647916(-)$1	1	140	179	14.7185
((.(((.(...(((..(((.....))).)))...).)))	chr11:65306757-65307014(-)$1	1	82	121	15.0886
(((((..((((((((((......))).))))))).))))	chr19:46320079-46320333(-)$1	1	23	62	13.6047
.(((((((((((((..(((....)))..)))))))))))	chr10:70551061-70551347(+)$1	1	200	239	17.6333
((.((((((((...((((.....))))...).)))))))	chr14:24613306-24613521(-)$1	1	142	181	16.0042
(((...(.(((((((((((......).)))))))))).)	chr19:7978263-7978574(+)$1	1	143	182	16.7711
.(((..((((((...(.((....)).).)))))).))))	chr11:77602264-77602505(-)$1	1	38	77	12.1405
((((((((...((((..(((...)))...))))..))))	chr21:46914361-46914585(+)$1	1	100	139	15.3746
(.(((((...(.((((((......)))))).)...))))	chr9:139296393-139296650(-)$1	1	12	51	11.7573
.((((((((((.....(((...)))....))))))))))	chr19:3958506-3958761(-)$1	1	146	185	17.8934
(((((((.....(((.(((....))))))))))))))).	chr3:184105069-184105319(+)$1	1	41	80	13.6461
(((((((.(((((..(((.....)))..))).)).))))	chr3:49753442-49753708(+)$1	1	114	153	14.9945
((.((((((((...((((.....))))...).)))))))	chr14:24613321-24613560(-)$1	1	181	220	16.0042
(.((..((((...((((((.....))).)))...)))).	chr9:117026577-117026787(+)$1	1	132	171	13.4626
(.((.((((((((((((..........))))))))))))	chr16:31202220-31202467(+)$1	1	16	55	12.5843

#PSSM
g : 0.14	[ : 0.09	c : 0.09	d : 0.09	e : 0.07	f : 0.07	i : 0.07	: : 0.05	b : 0.05	" : 0.05	$ : 0.03	# : 0.01	) : 0.01	D : 0.01	l : 0.01	' : 0.01	G : 0.01	a : 0.01	= : 0.01	
g : 0.14	[ : 0.14	c : 0.12	= : 0.11	e : 0.07	i : 0.07	d : 0.07	f : 0.05	: : 0.03	$ : 0.03	# : 0.01	" : 0.01	) : 0.01	D : 0.01	' : 0.01	G : 0.01	
c : 0.16	= : 0.14	g : 0.12	b : 0.09	e : 0.07	d : 0.07	i : 0.07	[ : 0.07	f : 0.05	# : 0.01	) : 0.01	D : 0.01	' : 0.01	" : 0.01	$ : 0.01	
g : 0.16	= : 0.16	c : 0.12	d : 0.09	b : 0.09	i : 0.07	[ : 0.05	e : 0.05	f : 0.03	" : 0.03	) : 0.01	! : 0.01	' : 0.01	a : 0.01	$ : 0.01	
= : 0.18	g : 0.16	d : 0.09	c : 0.09	i : 0.09	[ : 0.07	! : 0.05	e : 0.05	" : 0.05	a : 0.03	b : 0.01	# : 0.01	) : 0.01	f : 0.01	$ : 0.01	
= : 0.22	g : 0.18	i : 0.11	d : 0.07	c : 0.07	[ : 0.07	e : 0.05	" : 0.05	! : 0.05	b : 0.03	# : 0.01	) : 0.01	$ : 0.01	
= : 0.22	g : 0.18	c : 0.11	i : 0.09	[ : 0.07	e : 0.07	d : 0.05	a : 0.03	! : 0.03	b : 0.03	" : 0.03	# : 0.01	f : 0.01	
= : 0.22	g : 0.18	c : 0.11	e : 0.07	[ : 0.07	! : 0.07	" : 0.05	i : 0.05	a : 0.03	d : 0.03	# : 0.01	b : 0.01	f : 0.01	$ : 0.01	
= : 0.24	g : 0.14	c : 0.09	[ : 0.09	e : 0.07	" : 0.07	! : 0.07	i : 0.05	b : 0.03	f : 0.03	$ : 0.03	d : 0.03	
= : 0.24	g : 0.14	c : 0.12	" : 0.11	e : 0.07	b : 0.07	i : 0.05	d : 0.03	f : 0.03	$ : 0.03	a : 0.01	! : 0.01	[ : 0.01	
= : 0.24	c : 0.12	g : 0.11	" : 0.11	e : 0.07	a : 0.07	i : 0.05	b : 0.05	[ : 0.03	f : 0.03	$ : 0.03	d : 0.01	! : 0.01	
= : 0.18	" : 0.14	c : 0.12	g : 0.09	e : 0.07	! : 0.07	i : 0.05	$ : 0.05	b : 0.03	d : 0.03	f : 0.03	# : 0.03	[ : 0.03	
" : 0.20	= : 0.16	[ : 0.07	g : 0.07	! : 0.05	i : 0.05	a : 0.05	# : 0.05	f : 0.05	c : 0.05	e : 0.03	d : 0.03	b : 0.03	$ : 0.03	
" : 0.20	= : 0.12	d : 0.09	! : 0.09	c : 0.09	g : 0.05	[ : 0.05	# : 0.05	f : 0.05	a : 0.03	i : 0.03	e : 0.03	b : 0.03	$ : 0.01	
d : 0.14	c : 0.14	" : 0.12	! : 0.12	= : 0.11	# : 0.07	[ : 0.05	f : 0.05	e : 0.03	b : 0.03	i : 0.01	g : 0.01	a : 0.01	$ : 0.01	
c : 0.27	d : 0.22	[ : 0.09	! : 0.07	= : 0.07	f : 0.05	a : 0.03	# : 0.03	" : 0.03	i : 0.01	e : 0.01	b : 0.01	g : 0.01	$ : 0.01	
c : 0.44	d : 0.24	= : 0.07	[ : 0.07	f : 0.05	! : 0.03	i : 0.01	o : 0.01	# : 0.01	g : 0.01	
c : 0.38	d : 0.16	o : 0.12	b : 0.09	f : 0.05	[ : 0.03	= : 0.03	# : 0.01	a : 0.01	n : 0.01	r : 0.01	s : 0.01	
c : 0.25	n : 0.22	o : 0.20	d : 0.11	b : 0.09	a : 0.05	f : 0.01	r : 0.01	s : 0.01	
m : 0.29	n : 0.27	o : 0.24	l : 0.07	c : 0.03	f : 0.01	d : 0.01	r : 0.01	s : 0.01	
m : 0.29	n : 0.27	o : 0.24	l : 0.12	c : 0.01	r : 0.01	s : 0.01	
m : 0.29	n : 0.27	o : 0.25	l : 0.12	r : 0.01	s : 0.01	
m : 0.29	n : 0.25	o : 0.24	d : 0.05	l : 0.05	c : 0.03	e : 0.01	r : 0.01	s : 0.01	
c : 0.35	d : 0.24	o : 0.12	b : 0.09	n : 0.05	f : 0.03	a : 0.01	= : 0.01	e : 0.01	r : 0.01	s : 0.01	
c : 0.44	d : 0.24	b : 0.09	o : 0.05	f : 0.05	] : 0.01	= : 0.01	e : 0.01	a : 0.01	r : 0.01	s : 0.01	
c : 0.42	d : 0.24	] : 0.09	f : 0.05	a : 0.03	3 : 0.01	= : 0.01	e : 0.01	b : 0.01	o : 0.01	r : 0.01	4 : 0.01	s : 0.01	
d : 0.18	c : 0.14	3 : 0.14	] : 0.11	2 : 0.11	= : 0.05	f : 0.05	a : 0.03	4 : 0.03	e : 0.01	b : 0.01	o : 0.01	6 : 0.01	g : 0.01	s : 0.01	
3 : 0.22	2 : 0.18	] : 0.12	= : 0.12	c : 0.07	f : 0.07	4 : 0.05	g : 0.03	a : 0.03	i : 0.01	b : 0.01	6 : 0.01	
3 : 0.20	= : 0.16	c : 0.12	f : 0.09	a : 0.07	2 : 0.07	4 : 0.05	g : 0.05	b : 0.03	] : 0.03	i : 0.01	e : 0.01	d : 0.01	6 : 0.01	
= : 0.20	c : 0.18	] : 0.09	e : 0.07	3 : 0.07	b : 0.07	g : 0.07	f : 0.05	i : 0.03	4 : 0.03	d : 0.03	2 : 0.01	6 : 0.01	a : 0.01	
= : 0.24	c : 0.20	g : 0.11	e : 0.07	b : 0.07	i : 0.05	a : 0.05	4 : 0.03	d : 0.03	f : 0.03	] : 0.03	2 : 0.01	6 : 0.01	
= : 0.24	c : 0.12	g : 0.11	] : 0.11	e : 0.09	i : 0.07	d : 0.05	3 : 0.05	b : 0.03	f : 0.03	6 : 0.01	4 : 0.01	a : 0.01	
= : 0.24	g : 0.16	e : 0.09	i : 0.09	c : 0.09	3 : 0.07	4 : 0.05	] : 0.05	b : 0.03	f : 0.03	d : 0.03	2 : 0.01	
= : 0.22	g : 0.14	i : 0.09	3 : 0.09	e : 0.07	4 : 0.07	] : 0.07	c : 0.07	2 : 0.05	b : 0.03	a : 0.01	d : 0.01	f : 0.01	
= : 0.22	g : 0.18	i : 0.11	] : 0.09	c : 0.07	b : 0.05	4 : 0.05	e : 0.03	a : 0.03	2 : 0.03	3 : 0.03	d : 0.03	f : 0.01	
= : 0.25	g : 0.18	i : 0.11	c : 0.09	e : 0.07	4 : 0.05	2 : 0.05	b : 0.03	3 : 0.03	d : 0.03	f : 0.01	a : 0.01	] : 0.01	
= : 0.25	g : 0.16	c : 0.11	i : 0.11	d : 0.07	2 : 0.07	] : 0.05	e : 0.05	3 : 0.03	4 : 0.01	f : 0.01	a : 0.01	
= : 0.22	c : 0.14	g : 0.14	i : 0.12	d : 0.11	e : 0.07	] : 0.05	3 : 0.03	b : 0.01	f : 0.01	: : 0.01	2 : 0.01	
= : 0.18	g : 0.16	c : 0.12	d : 0.11	i : 0.11	e : 0.07	2 : 0.05	b : 0.03	f : 0.03	] : 0.03	3 : 0.01	a : 0.01	: : 0.01	

#score	765.7040289573666
#seq	54
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_CDS_m2_run2.txt

#BEAR
cc::ffffffuuuuuuuuuuuuffffff	chr6:136590426-136590682(-)$1	256	67	95	21.0515
cc[gggggggvvvvvvvvvvvvvggggg	chr14:74764465-74764747(-)$1	282	89	117	23.2379
==========yyyyyyyyyyyyyyyy==	chr17:80202572-80202836(-)$1	264	26	54	22.4933
e"""bb[ccctttttttttttccc333b	chr1:228333231-228333460(+)$1	229	165	193	24.2793
FFFFccc[bbtttttttttttbb333cc	chr8:48878859-48879110(+)$1	251	56	84	22.2207
hhhhhhdddduuuuuuuuuuuudddd::	chr12:8082952-8083177(-)$1	225	99	127	20.3887
==========uuuuuuuuuuuu======	chr17:45755677-45755942(+)$1	265	155	183	24.9870
ffffffffffyyyyyyyyyyyyyyyyff	chr15:43328560-43328831(-)$1	271	186	214	20.5747
ggggggg[bbtttttttttttbb]gggg	chr3:9424886-9425143(+)$1	257	150	178	24.1287
:ccc[eeeeettttttttttteeeee]c	chr12:111955906-111956153(-)$1	247	171	199	23.3559
iiiiieeeeettttttttttteeeee22	chr1:201839885-201840091(+)$1	206	149	177	24.2794
cbb[fffffftttttttttttffffff]	chr12:69979939-69980195(+)$1	256	124	152	22.9116
eeee####bbtttttttttttbb4444e	chr2:242437646-242437910(-)$1	264	184	212	23.4175
bb[gggggggtttttttttttggggggg	chr14:34398131-34398383(-)$1	252	185	213	23.8776
ii"""eeeeeuuuuuuuuuuuueeeee4	chr3:172058770-172059044(+)$1	274	24	52	24.4077
iiiiiiiivvvvvvvvvvvvviiiiiii	chr6:31613264-31613518(-)$1	254	12	40	23.3052
:gggggggvvvvvvvvvvvvvggggggg	chr9:131822694-131822955(+)$1	261	112	140	22.0497
ff[ddddavvvvvvvvvvvvva]ddddf	chr21:40720392-40720627(-)$1	235	140	168	22.1767
ccc[a[bb[attttttttttta]bb]a]	chr14:102451914-102452148(+)$1	234	145	173	23.7556
e!!bb[ddddtttttttttttdddd22b	chr17:4851450-4851658(-)$1	208	31	59	23.2315
c!!eeeeeyyyyyyyyyyyyyyyyeeee	chr12:54797292-54797510(-)$1	218	161	189	22.8208
==========ttttttttttt=======	chr15:41770609-41770866(+)$1	257	58	86	25.1662
cc[eeeeewwwwwwwwwwwwwweeeeec	chr9:114182153-114182398(-)$1	245	202	230	22.3539
$$$$$cccvvvvvvvvvvvvvccc333e	chr17:49247277-49247535(+)$1	258	162	190	22.6235
dddd[bb[bbuuuuuuuuuuuubbbb]d	chr16:418457-418707(-)$1	250	185	213	22.2768
eeeebb[ccctttttttttttccc]bb4	chr3:131101059-131101306(+)$1	247	180	208	22.9681
ii[ddddwwwwwwwwwwwwwwdddd]ii	chr10:3208944-3209233(-)$1	289	76	104	21.3686
ddddccc[bbtttttttttttbb]ccc]	chr9:133738015-133738280(+)$1	265	34	62	23.5629
gggg[eeeeeuuuuuuuuuuuueeeee]	chr6:80721252-80721585(+)$1	333	53	81	24.2634
!iiiiiiiiitttttttttttiiiiiii	chr20:62297223-62297497(+)$1	274	56	84	24.4772
ccc####cccuuuuuuuuuuuucccccc	chr12:53860977-53861179(+)$1	202	52	80	23.9874
i####eeeeevvvvvvvvvvvvveeeee	chr2:149526700-149526961(+)$1	261	98	126	23.2076
Dccc[eeeeettttttttttteeeee]c	chr12:120572402-120572668(-)$1	266	44	72	23.3489
ii[cccyyyyyyyyyyyyyyyyccc22i	chr17:65144565-65144785(-)$1	220	184	212	22.8276
dddffffffvvvvvvvvvvvvvffffff	chr2:234758381-234758594(-)$1	213	24	52	22.0449
[a[cccyyyyyyyyyyyyyyyycccaii	chr11:61905254-61905533(+)$1	279	191	219	22.8217
dd!!eeeeeuuuuuuuuuuuueeeee22	chr9:71863070-71863283(+)$1	213	84	112	23.7799
====acccvvvvvvvvvvvvvccc]a22	chr22:21351174-21351393(+)$1	219	179	207	23.3304
d:eeeee[bbwwwwwwwwwwwwwwbbee	chr20:45867755-45868024(-)$1	269	139	167	19.7655
iii[ccc[auuuuuuuuuuuuaccciii	chr19:10746086-10746308(+)$1	222	78	106	24.6883
dddd[bbcccvvvvvvvvvvvvvccc]b	chr6:30859032-30859267(+)$1	235	180	208	22.1188
bb!!ddddwwwwwwwwwwwwwwdddd22	chr5:56545300-56545558(+)$1	258	173	201	21.6230
fffffdddduuuuuuuuuuuudddd]ff	chr6:43517077-43517327(-)$1	250	47	75	22.6358
bb[gggggggtttttttttttggggggg	chr1:154148454-154148696(-)$1	242	3	31	23.8776
ee[bbcccyyyyyyyyyyyyyyyyccc2	chr5:31467920-31468173(-)$1	253	148	176	22.2318
d####eeeeeyyyyyyyyyyyyyyyyee	chr16:31193883-31194134(+)$1	251	137	165	21.8014
FFF:eeeeeuuuuuuuuuuuueeeeehh	chr1:109952496-109952774(-)$1	278	174	202	20.8763
ddd[ccc[bbtttttttttttbb333cc	chr12:57926862-57927125(-)$1	263	154	182	23.9333
##eeeee[bbtttttttttttbb]eeee	chr12:46758719-46758990(-)$1	271	108	136	23.5720
fffff[ddddvvvvvvvvvvvvvdddd]	chr15:37391485-37391757(-)$1	272	106	134	21.9843
[eeeeeyyyyyyyyyyyyyyyyeeeee]	chr7:151890930-151891194(-)$1	264	56	84	22.2318
ee"""eeeeettttttttttteeeee33	chr10:3147172-3147419(+)$1	247	21	49	24.7064
####cccwwwwwwwwwwwwwwccc]fff	chrX:153196128-153196429(-)$1	301	18	46	21.5539
edddd[ddddtttttttttttdddd]dd	chr9:134038458-134038707(+)$1	249	186	214	22.9268
[bb"""ddddtttttttttttdddd333	chr3:52561464-52561741(-)$1	277	66	94	24.0541
dddd!!ddddtttttttttttdddd22d	chr19:12829720-12829944(-)$1	224	133	161	23.2981
eeeeffffffuuuuuuuuuuuuffffff	chr3:12880943-12881154(-)$1	211	83	111	22.6427
[ccc[a[bbvvvvvvvvvvvvvbba]cc	chr7:102306495-102306797(-)$1	302	184	212	22.8346

#otherMatches

#Seq PSSM
CCAAAAGAUUACAAGGAAUACAAAUCUU	chr6:136590426-136590682(-)$1	256	67	95	21.0515
GUGCUGCGGGAUGACAUCGAUAACCCGU	chr14:74764465-74764747(-)$1	282	89	117	23.2379
GUGGCGGUGCGUCCCCUCCCUGCCCAGC	chr17:80202572-80202836(-)$1	264	26	54	22.4933
GCCAGGAGCCCAAACCCAACAGGCACAC	chr1:228333231-228333460(+)$1	229	165	193	24.2793
CCACAGCAUGGCACUCAUCCACAACCGC	chr8:48878859-48879110(+)$1	251	56	84	22.2207
AGAGUGAGUAUCCUUCACACCUUACUAC	chr12:8082952-8083177(-)$1	225	99	127	20.3887
AGUGGGCUAUGUCUGUCAUUCUGUAGCU	chr17:45755677-45755942(+)$1	265	155	183	24.9870
AAUUUUUAACUUAAAAUACUCUCACUGU	chr15:43328560-43328831(-)$1	271	186	214	20.5747
UUUUCCUUGCGUUUAUUCUAAGUCAGGA	chr3:9424886-9425143(+)$1	257	150	178	24.1287
UAGUUUACAUAACUGAUAUGAAUGUGCA	chr12:111955906-111956153(-)$1	247	171	199	23.3559
UGAAAAUUCGUAUUUUGGUCCUGAGUUA	chr1:201839885-201840091(+)$1	206	149	177	24.2794
UGCACCUGUUAACAUCUUUAAGGCAGGA	chr12:69979939-69980195(+)$1	256	124	152	22.9116
GGACGUUCCCCCCUACCAUCCGGCCGAG	chr2:242437646-242437910(-)$1	264	184	212	23.4175
GCAUGUGGGGGAUUGACCACACCCCAUA	chr14:34398131-34398383(-)$1	252	185	213	23.8776
AGAAGAUGUUGGUUUUCAUGAAAACAUA	chr3:172058770-172059044(+)$1	274	24	52	24.4077
UUCCAAGGAUAUAACUGAAAGUUUUGGA	chr6:31613264-31613518(-)$1	254	12	40	23.3052
UUUCUCUCACUGCUCUUCCCAGAGAGGA	chr9:131822694-131822955(+)$1	261	112	140	22.0497
GCGCCGCCAAGGAAGAGGUGAGUGCGGG	chr21:40720392-40720627(-)$1	235	140	168	22.1767
CCUGAACCCCAAGAUAUGAAAGUGGCUG	chr14:102451914-102452148(+)$1	234	145	173	23.7556
CAUCGUGGGCUACAAGGACUCGCCCUCC	chr17:4851450-4851658(-)$1	208	31	59	23.2315
GCACCUCCUGAAGGGAAAAAGACUGGGG	chr12:54797292-54797510(-)$1	218	161	189	22.8208
CUUAUUUGCCUGUGAGCUUAUGGUGAAU	chr15:41770609-41770866(+)$1	257	58	86	25.1662
GAAGCUAUUUAUUAAAGAAAGUAUGGCU	chr9:114182153-114182398(-)$1	245	202	230	22.3539
UUUUAUGCAACACCAUUUAAAGCAGACG	chr17:49247277-49247535(+)$1	258	162	190	22.6235
AGCCAUCUACGACAAGUACAAGGUGAGG	chr16:418457-418707(-)$1	250	185	213	22.2768
GAGAAAAGUCUUUGCCCCUCUGACCUUG	chr3:131101059-131101306(+)$1	247	180	208	22.9681
GGCCAGAGAAGACACGAAUAAUCUGUUC	chr10:3208944-3209233(-)$1	289	76	104	21.3686
UUUGCUGUGUAGUGAAUUAAGGCUCAGC	chr9:133738015-133738280(+)$1	265	34	62	23.5629
GUAAGUACAUCUGUGUUUUUUAAUGUAA	chr6:80721252-80721585(+)$1	333	53	81	24.2634
UGUCCUGGGCAUCCCCCUGUGGUCUGGG	chr20:62297223-62297497(+)$1	274	56	84	24.4772
UGCAACAGUCUCAUUUUCCCAUGACGCA	chr12:53860977-53861179(+)$1	202	52	80	23.9874
AGUAUUAUGCUGUAAGAACUUUUGUGUG	chr2:149526700-149526961(+)$1	261	98	126	23.2076
UGGUUUGGGAUUGUCAUUUGUUCUCAUG	chr12:120572402-120572668(-)$1	266	44	72	23.3489
CAGAUGAUUCCCAACACACUUACAUAGU	chr17:65144565-65144785(-)$1	220	184	212	22.8276
UGCGGUGACUUUGAAAUGUGCUGUCACU	chr2:234758381-234758594(-)$1	213	24	52	22.0449
UGAGUCUUCCCCACUGAGCCUUGACCGC	chr11:61905254-61905533(+)$1	279	191	219	22.8217
GCCACGGGCAGGAACAGGAGAGCCUGGU	chr9:71863070-71863283(+)$1	213	84	112	23.7799
GGGCCCUGGGGGUGAGAGAAGCAGAGCA	chr22:21351174-21351393(+)$1	219	179	207	23.3304
UAGUUGUAGGUAAAACUCCACCAUCCAC	chr20:45867755-45868024(-)$1	269	139	167	19.7655
UUUACUGCGAAAACCUGCAACCCAGAGG	chr19:10746086-10746308(+)$1	222	78	106	24.6883
GUGUACCUCAACGACUCCACCUAUGACG	chr6:30859032-30859267(+)$1	235	180	208	22.1188
CCUUGGAAUACAUUUGAAUCAUUUCCUU	chr5:56545300-56545558(+)$1	258	173	201	21.6230
GCAUGCUUGUUCCUCCAUCAUCAAGAUG	chr6:43517077-43517327(-)$1	250	47	75	22.6358
GGAUCCAGCUGGUUGAAGAAGAGCUGGA	chr1:154148454-154148696(-)$1	242	3	31	23.8776
UGUCUUAGCCAAUUUCACCUUCUACUAA	chr5:31467920-31468173(-)$1	253	148	176	22.2318
UUUCUGAAUAUUGCuuuucuuuuucuug	chr16:31193883-31194134(+)$1	251	137	165	21.8014
AUCAUCCUCAAACAAGUAAUGGAGGAGA	chr1:109952496-109952774(-)$1	278	174	202	20.8763
GGCCUUAAGGUCUACAACAUUCCACAUA	chr12:57926862-57927125(-)$1	263	154	182	23.9333
AACUCAUCUCUAAAGAGAAUUGAAAUGA	chr12:46758719-46758990(-)$1	271	108	136	23.5720
GUUUAAAUCUCCAACACUUACCUAGAUA	chr15:37391485-37391757(-)$1	272	106	134	21.9843
CACAGCCUCCCCCACCAACACAGCUGUU	chr7:151890930-151891194(-)$1	264	56	84	22.2318
CUGUCAAAGCCCCUUUUCUCUGCUUUCU	chr10:3147172-3147419(+)$1	247	21	49	24.7064
CUUCAGGGAGAAAACAUGGCACCUUGCU	chrX:153196128-153196429(-)$1	301	18	46	21.5539
uugcaagugacucugugucucucaccug	chr9:134038458-134038707(+)$1	249	186	214	22.9268
UUGUCCAGGCAGACAAGCCCAGCUUCUU	chr3:52561464-52561741(-)$1	277	66	94	24.0541
GACACACUGAACUCUCACuucucagcau	chr19:12829720-12829944(-)$1	224	133	161	23.2981
CUCUGCACAGACGCUAACCCACCUGUGU	chr3:12880943-12881154(-)$1	211	83	111	22.6427
cagacgugccugcuuccccuucgccuuc	chr7:102306495-102306797(-)$1	302	184	212	22.8346

#DB
))..((((((............))))))	chr6:136590426-136590682(-)$1	1	67	95	21.0515
((.(((((((.............)))))	chr14:74764465-74764747(-)$1	1	89	117	23.2379
((((((((((................))	chr17:80202572-80202836(-)$1	1	26	54	22.4933
(...((.(((...........)))...)	chr1:228333231-228333460(+)$1	1	165	193	24.2793
(((((((.((...........))...))	chr8:48878859-48879110(+)$1	1	56	84	22.2207
))))))((((............))))..	chr12:8082952-8083177(-)$1	1	99	127	20.3887
((((((((((............))))))	chr17:45755677-45755942(+)$1	1	155	183	24.9870
((((((((((................))	chr15:43328560-43328831(-)$1	1	186	214	20.5747
(((((((.((...........)).))))	chr3:9424886-9425143(+)$1	1	150	178	24.1287
.(((.(((((...........))))).)	chr12:111955906-111956153(-)$1	1	171	199	23.3559
((((((((((...........)))))..	chr1:201839885-201840091(+)$1	1	149	177	24.2794
(((.((((((...........)))))).	chr12:69979939-69980195(+)$1	1	124	152	22.9116
((((....((...........))....)	chr2:242437646-242437910(-)$1	1	184	212	23.4175
((.(((((((...........)))))))	chr14:34398131-34398383(-)$1	1	185	213	23.8776
((...(((((............))))).	chr3:172058770-172059044(+)$1	1	24	52	24.4077
((((((((.............)))))))	chr6:31613264-31613518(-)$1	1	12	40	23.3052
.(((((((.............)))))))	chr9:131822694-131822955(+)$1	1	112	140	22.0497
((.(((((.............).)))))	chr21:40720392-40720627(-)$1	1	140	168	22.1767
(((.(.((.(...........).)).).	chr14:102451914-102452148(+)$1	1	145	173	23.7556
(..((.((((...........))))..)	chr17:4851450-4851658(-)$1	1	31	59	23.2315
(..(((((................))))	chr12:54797292-54797510(-)$1	1	161	189	22.8208
((((((((((...........)))))))	chr15:41770609-41770866(+)$1	1	58	86	25.1662
((.(((((..............))))))	chr9:114182153-114182398(-)$1	1	202	230	22.3539
.....(((.............)))...)	chr17:49247277-49247535(+)$1	1	162	190	22.6235
((((.((.((............)))).)	chr16:418457-418707(-)$1	1	185	213	22.2768
((((((.(((...........))).)).	chr3:131101059-131101306(+)$1	1	180	208	22.9681
((.((((..............)))).))	chr10:3208944-3209233(-)$1	1	76	104	21.3686
(((((((.((...........)).))).	chr9:133738015-133738280(+)$1	1	34	62	23.5629
((((.(((((............))))).	chr6:80721252-80721585(+)$1	1	53	81	24.2634
.(((((((((...........)))))))	chr20:62297223-62297497(+)$1	1	56	84	24.4772
(((....(((............))))))	chr12:53860977-53861179(+)$1	1	52	80	23.9874
(....(((((.............)))))	chr2:149526700-149526961(+)$1	1	98	126	23.2076
((((.(((((...........))))).)	chr12:120572402-120572668(-)$1	1	44	72	23.3489
((.(((................)))..)	chr17:65144565-65144785(-)$1	1	184	212	22.8276
)))((((((.............))))))	chr2:234758381-234758594(-)$1	1	24	52	22.0449
.(.(((................))))))	chr11:61905254-61905533(+)$1	1	191	219	22.8217
((..(((((............)))))..	chr9:71863070-71863283(+)$1	1	84	112	23.7799
((((((((.............))).)..	chr22:21351174-21351393(+)$1	1	179	207	23.3304
).(((((.((..............))))	chr20:45867755-45868024(-)$1	1	139	167	19.7655
(((.(((.(............)))))))	chr19:10746086-10746308(+)$1	1	78	106	24.6883
((((.(((((.............))).)	chr6:30859032-30859267(+)$1	1	180	208	22.1188
((..((((..............))))..	chr5:56545300-56545558(+)$1	1	173	201	21.6230
(((((((((............)))).))	chr6:43517077-43517327(-)$1	1	47	75	22.6358
((.(((((((...........)))))))	chr1:154148454-154148696(-)$1	1	3	31	23.8776
((.(((((................))).	chr5:31467920-31468173(-)$1	1	148	176	22.2318
(....(((((................))	chr16:31193883-31194134(+)$1	1	137	165	21.8014
(((.(((((............)))))((	chr1:109952496-109952774(-)$1	1	174	202	20.8763
(((.(((.((...........))...))	chr12:57926862-57927125(-)$1	1	154	182	23.9333
..(((((.((...........)).))))	chr12:46758719-46758990(-)$1	1	108	136	23.5720
(((((.((((.............)))).	chr15:37391485-37391757(-)$1	1	106	134	21.9843
.(((((................))))).	chr7:151890930-151891194(-)$1	1	56	84	22.2318
((...(((((...........)))))..	chr10:3147172-3147419(+)$1	1	21	49	24.7064
....(((..............))).)))	chrX:153196128-153196429(-)$1	1	18	46	21.5539
(((((.((((...........)))).))	chr9:134038458-134038707(+)$1	1	186	214	22.9268
.((...((((...........))))...	chr3:52561464-52561741(-)$1	1	66	94	24.0541
((((..((((...........))))..)	chr19:12829720-12829944(-)$1	1	133	161	23.2981
))))((((((............))))))	chr3:12880943-12881154(-)$1	1	83	111	22.6427
.(((.(.((.............))).))	chr7:102306495-102306797(-)$1	1	184	212	22.8346

#PSSM
d : 0.15	e : 0.13	c : 0.12	i : 0.12	= : 0.06	f : 0.06	[ : 0.06	b : 0.05	F : 0.03	g : 0.03	: : 0.03	# : 0.03	h : 0.01	$ : 0.01	! : 0.01	D : 0.01	
c : 0.13	d : 0.13	i : 0.12	e : 0.10	b : 0.08	= : 0.06	f : 0.06	# : 0.06	g : 0.05	F : 0.03	! : 0.03	" : 0.01	h : 0.01	$ : 0.01	a : 0.01	: : 0.01	
[ : 0.15	d : 0.12	e : 0.10	c : 0.08	= : 0.06	i : 0.06	! : 0.06	" : 0.05	f : 0.05	g : 0.05	# : 0.05	F : 0.03	b : 0.03	: : 0.01	h : 0.01	$ : 0.01	
e : 0.13	d : 0.12	g : 0.10	c : 0.08	= : 0.06	" : 0.06	f : 0.06	[ : 0.06	# : 0.06	i : 0.05	: : 0.03	b : 0.03	! : 0.03	F : 0.01	h : 0.01	$ : 0.01	
f : 0.12	c : 0.12	e : 0.12	[ : 0.10	g : 0.08	b : 0.06	# : 0.06	d : 0.06	= : 0.05	i : 0.05	" : 0.05	a : 0.03	h : 0.01	$ : 0.01	! : 0.01	
e : 0.25	c : 0.17	f : 0.08	g : 0.08	b : 0.06	d : 0.06	[ : 0.06	= : 0.05	# : 0.03	i : 0.03	h : 0.01	" : 0.01	! : 0.01	a : 0.01	
e : 0.24	d : 0.17	c : 0.13	f : 0.08	g : 0.08	= : 0.05	[ : 0.05	b : 0.05	y : 0.05	# : 0.03	i : 0.03	
e : 0.20	[ : 0.13	d : 0.13	c : 0.12	f : 0.08	g : 0.06	= : 0.05	y : 0.05	i : 0.03	b : 0.03	w : 0.03	# : 0.01	a : 0.01	
e : 0.17	b : 0.15	d : 0.12	f : 0.08	v : 0.08	y : 0.08	c : 0.06	w : 0.06	g : 0.05	= : 0.05	[ : 0.01	i : 0.01	a : 0.01	
b : 0.13	e : 0.13	v : 0.12	d : 0.10	y : 0.08	f : 0.06	c : 0.06	w : 0.06	u : 0.06	g : 0.05	= : 0.05	a : 0.01	i : 0.01	
t : 0.37	u : 0.20	v : 0.18	y : 0.13	w : 0.08	
t : 0.37	u : 0.20	v : 0.18	y : 0.13	w : 0.08	
t : 0.37	u : 0.20	v : 0.18	y : 0.13	w : 0.08	
t : 0.37	u : 0.20	v : 0.18	y : 0.13	w : 0.08	
t : 0.37	u : 0.20	v : 0.18	y : 0.13	w : 0.08	
t : 0.37	u : 0.20	v : 0.18	y : 0.13	w : 0.08	
t : 0.37	u : 0.20	v : 0.18	y : 0.13	w : 0.08	
t : 0.37	u : 0.20	v : 0.18	y : 0.13	w : 0.08	
t : 0.37	u : 0.20	v : 0.18	y : 0.13	w : 0.08	
t : 0.37	u : 0.20	v : 0.18	y : 0.13	w : 0.08	
t : 0.37	u : 0.20	v : 0.18	y : 0.13	w : 0.08	
u : 0.13	y : 0.13	v : 0.10	b : 0.10	e : 0.10	d : 0.10	c : 0.08	g : 0.05	a : 0.05	w : 0.05	i : 0.03	f : 0.01	= : 0.01	
e : 0.17	c : 0.15	b : 0.13	d : 0.13	y : 0.08	f : 0.06	v : 0.06	g : 0.05	= : 0.03	i : 0.03	] : 0.03	w : 0.01	
e : 0.18	c : 0.17	d : 0.17	y : 0.08	f : 0.06	g : 0.06	] : 0.05	b : 0.05	3 : 0.03	= : 0.03	i : 0.03	4 : 0.01	w : 0.01	
e : 0.22	d : 0.17	c : 0.12	g : 0.08	f : 0.06	3 : 0.06	y : 0.05	b : 0.05	] : 0.05	= : 0.03	i : 0.03	4 : 0.01	a : 0.01	
e : 0.22	f : 0.08	g : 0.08	3 : 0.08	] : 0.08	d : 0.06	c : 0.06	y : 0.05	i : 0.05	2 : 0.05	b : 0.05	= : 0.03	a : 0.03	4 : 0.01	
e : 0.15	f : 0.12	2 : 0.12	c : 0.10	g : 0.08	i : 0.08	3 : 0.06	] : 0.06	= : 0.05	d : 0.05	: : 0.01	4 : 0.01	a : 0.01	b : 0.01	h : 0.01	
f : 0.12	c : 0.12	e : 0.12	] : 0.10	i : 0.10	g : 0.08	2 : 0.08	= : 0.05	b : 0.05	d : 0.05	4 : 0.03	3 : 0.03	: : 0.01	h : 0.01	

#score	1330.719625708399
#seq	58
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_transcript_m1_run2.txt

#BEAR
#gggggggtttttttttttggggggg4	chr1:39896273-39896486(+)$1	213	90	117	22.8478
:eeeeevvvvvvvvvvvvveeeee::c	chr21:34926608-34926883(+)$1	275	34	61	21.0968
eeee[bbuuuuuuuuuuuubb]eeeee	chr1:179991823-179992062(+)$1	239	128	155	23.8898
####cccyyyyyyyyyyyyyyyyccc4	chr16:50359557-50359808(-)$1	251	177	204	20.9706
=======uuuuuuuuuuuu========	chr1:39906621-39906897(+)$1	276	52	79	24.5753
FFFdddduuuuuuuuuuuudddd::dd	chr12:49434646-49434919(-)$1	273	33	60	20.6973
eee!!bbwwwwwwwwwwwwwwbb22ee	chr5:137721624-137721890(+)$1	266	195	222	22.1748
!!eeeeettttttttttteeeee22ad	chr2:54872414-54872663(+)$1	249	42	69	22.6957
hhhhhhhuuuuuuuuuuuuhhhhhhhh	chr7:94749957-94750246(+)$1	289	180	207	21.5867
hhhdddduuuuuuuuuuuuddddccc[	chr9:131339371-131339597(+)$1	226	81	108	23.2145
eee!!ccctttttttttttccc22eee	chr16:72845703-72845990(-)$1	287	144	171	23.0134
bbeeeeevvvvvvvvvvvvveeeee]b	chr2:73678608-73678907(+)$1	299	167	194	23.6041
eeeee[bbtttttttttttbb]eeeee	chr14:73577444-73577695(+)$1	251	45	72	22.4189
[bb[awwwwwwwwwwwwwwa]bb]hhh	chr14:102505329-102505571(+)$1	242	188	215	20.9873
b[eeeeewwwwwwwwwwwwwweeeeeb	chr17:61829199-61829455(-)$1	256	48	75	22.6777
gggggggwwwwwwwwwwwwwwgggggg	chr3:184024434-184024670(+)$1	236	43	70	23.0095
e"""cccuuuuuuuuuuuuccceeeee	chr2:54884886-54885091(+)$1	205	36	63	24.3018
FFeeeeeuuuuuuuuuuuueeeee:::	chr5:75996799-75997116(+)$1	317	79	106	20.9365
dd!!cccuuuuuuuuuuuuccc22ddd	chr15:62164086-62164334(-)$1	248	39	66	23.9376
dddd[bbuuuuuuuuuuuubb]dddd3	chr14:31619233-31619474(-)$1	241	17	44	23.2902
$eeeeevvvvvvvvvvvvveeeee333	chr14:97014086-97014354(+)$1	268	148	175	23.8183
"eeeeevvvvvvvvvvvvveeeee22f	chr10:5789458-5789710(+)$1	252	188	215	23.5898
[ddddbbtttttttttttbb]dddd]b	chr11:129992097-129992351(+)$1	254	189	216	21.8050
ggggcccwwwwwwwwwwwwwwccc]gg	chr12:26571977-26572215(-)$1	238	152	179	23.1098
!!eeeeeuuuuuuuuuuuueeeee22b	chrX:128615010-128615262(-)$1	252	77	104	24.2743
++++cccuuuuuuuuuuuuccc>>>>>	chr9:139734720-139734986(+)$1	266	61	88	21.0637
[eeeeeyyyyyyyyyyyyyyyyeeeee	chr2:32768418-32768656(+)$1	238	8	35	21.5861
iiiiiwwwwwwwwwwwwwwiiiiiiii	chr11:120318481-120318703(+)$1	222	150	177	22.4635
e[eeeeevvvvvvvvvvvvveeeee]e	chr1:214828510-214828775(+)$1	265	33	60	24.0423
"""dddduuuuuuuuuuuudddd22hh	chr2:54858575-54858806(+)$1	231	152	179	23.6872
ddd!!ccctttttttttttccc22ddd	chr8:48830735-48830953(-)$1	218	84	111	22.5993
gggggggattttttttttta]gggggg	chr4:88047237-88047517(+)$1	280	186	213	23.6207
cc[dddduuuuuuuuuuuuddddccc:	chr5:132431689-132431952(+)$1	263	112	139	23.2055
dddd[bbuuuuuuuuuuuubb]dddd:	chr9:139351880-139352126(-)$1	246	87	114	22.5586
cc"""bbvvvvvvvvvvvvvbb4444c	chr2:95770311-95770576(-)$1	265	126	153	23.2740
iiiiiiiitttttttttttiiiiiiii	chr4:3161978-3162216(+)$1	238	126	153	22.5631
[ffffffuuuuuuuuuuuuffffffbb	chr8:48805774-48805992(-)$1	218	20	47	22.6428
[bbddddvvvvvvvvvvvvvdddd]bb	chr2:63091765-63092002(+)$1	237	115	142	23.0782
ggg!!ccctttttttttttccc22ggg	chr9:100774624-100774855(+)$1	231	74	101	23.3408
dd[ddddvvvvvvvvvvvvvdddd22d	chr6:7579493-7579737(+)$1	244	207	234	23.5332
ddddddduuuuuuuuuuuudddd22dd	chr10:105200390-105200697(+)$1	307	245	272	23.4809
ggggggguuuuuuuuuuuuggggggge	chr1:52940700-52940962(-)$1	262	27	54	24.2468
fff!!bbuuuuuuuuuuuubb]fffff	chr12:116421152-116421450(-)$1	298	208	235	23.2285
Fffffffuuuuuuuuuuuuffffff::	chr9:127998863-127999086(-)$1	223	190	217	20.8724
ggggggguuuuuuuuuuuuggggggg:	chr17:62270952-62271268(-)$1	316	287	314	23.5406
gggggggvvvvvvvvvvvvvggggggg	chr3:121414090-121414325(-)$1	235	41	68	24.0945
b:::cccuuuuuuuuuuuucccfffff	chr2:32664625-32664852(+)$1	227	171	198	20.7209
ff[cccattttttttttta]ccc]fff	chrX:123195541-123195811(+)$1	270	31	58	22.8606
eeeeebbuuuuuuuuuuuubb]eeeee	chr17:48823798-48824166(+)$1	368	51	78	23.8378
e!!eeeeettttttttttteeeeeeee	chrX:128582231-128582466(-)$1	235	49	76	22.8418
bb[dddduuuuuuuuuuuudddd]bbc	chr2:170493558-170493836(+)$1	278	234	261	23.2610
:cccbbwwwwwwwwwwwwwwbb]ccc:	chr16:89348150-89348436(-)$1	286	94	121	20.3878
'a[ddddwwwwwwwwwwwwwwdddda7	chrX:41091582-41091861(+)$1	279	164	191	21.7897
hhhhhhwwwwwwwwwwwwwwhhhhhhh	chr2:15467874-15468094(-)$1	220	10	37	20.8358
dd[cccyyyyyyyyyyyyyyyyccc]d	chr17:37680865-37681155(+)$1	290	137	164	21.2709
ffff[bbvvvvvvvvvvvvvbb]ffff	chr17:8387447-8387685(-)$1	238	61	88	22.7034
d!!dddduuuuuuuuuuuudddddddd	chr4:151604721-151604969(-)$1	248	156	183	23.7049
ffff[bbuuuuuuuuuuuubbffffff	chr2:242187645-242187863(-)$1	218	94	121	22.9155
ddddcccvvvvvvvvvvvvvccc333d	chr11:118375673-118375932(+)$1	259	110	137	24.0860
:gggggggtttttttttttggggggg:	chr9:123171408-123171681(-)$1	273	123	150	21.2100
'eeeeevvvvvvvvvvvvveeeee===	chr3:184049415-184049667(+)$1	252	133	160	23.3201
"cccyyyyyyyyyyyyyyyyccc333d	chr16:89356970-89357252(-)$1	282	80	107	21.4886
###ddddvvvvvvvvvvvvvdddd777	chr22:41572731-41572971(+)$1	240	53	80	22.3200
bbeeeeeuuuuuuuuuuuueeeee>>>	chr16:72130773-72131010(+)$1	237	63	90	23.5248

#otherMatches

#Seq PSSM
CCCUCCUUAGGAAUUAAAGAAGGAGGU	chr1:39896273-39896486(+)$1	213	90	117	22.8478
UGGAGGAGAAAAAGAAGUACCUCCCCC	chr21:34926608-34926883(+)$1	275	34	61	21.0968
UCGACAGAAAAAAAAUCAACUCUUGAA	chr1:179991823-179992062(+)$1	239	128	155	23.8898
CAUUUGUUUAAAAACAUUAAAGUACAU	chr16:50359557-50359808(-)$1	251	177	204	20.9706
GACUAUUAAGGAAGAGACAGAUGGUCU	chr1:39906621-39906897(+)$1	276	52	79	24.5753
CCAGGGGAAUUCCACACUACCCCACCU	chr12:49434646-49434919(-)$1	273	33	60	20.6973
CUGCAUCAAAGAAAUUAAAAGGAGACA	chr5:137721624-137721890(+)$1	266	195	222	22.1748
ACGAGGUAGACAGCAAGCGCCUCACCG	chr2:54872414-54872663(+)$1	249	42	69	22.6957
AUGGCAGGUAAAUUAAGGACUGUUGUU	chr7:94749957-94750246(+)$1	289	180	207	21.5867
AAUGGCCUCUGAUGAUUUUGGCCGAGA	chr9:131339371-131339597(+)$1	226	81	108	23.2145
UUCGAAGCGACCAAAAACAGCUGAGGA	chr16:72845703-72845990(-)$1	287	144	171	23.0134
UCCUCUAGUUUAUACUCAUAUAGAGAG	chr2:73678608-73678907(+)$1	299	167	194	23.6041
GUUGAAUGGUGUAGAGUUGUAGUUAAU	chr14:73577444-73577695(+)$1	251	45	72	22.4189
CCGUGUCCCAGCAGUACCUCCCGCUCU	chr14:102505329-102505571(+)$1	242	188	215	20.9873
CAUGUGCAAAGACAGGAAGCAGCACAG	chr17:61829199-61829455(-)$1	256	48	75	22.6777
UCAAGGGUGACUGUUUUUUAUUCCUUG	chr3:184024434-184024670(+)$1	236	43	70	23.0095
UAAGGCCAUAUGACUGCCCGGCACCUC	chr2:54884886-54885091(+)$1	205	36	63	24.3018
UGUUCUGUUCUUAUUUUGUCAGAAAUA	chr5:75996799-75997116(+)$1	317	79	106	20.9365
GGUUGGUUUAAAAUUAAACACCUUCCA	chr15:62164086-62164334(-)$1	248	39	66	23.9376
AUGUUUAAUUGAAUAAUUCUACACAUU	chr14:31619233-31619474(-)$1	241	17	44	23.2902
GUGCUUCAGAAAAAGAAAAAGGUAAAU	chr14:97014086-97014354(+)$1	268	148	175	23.8183
UCCAUGCAUUUUAAAACUUCAUGGUAC	chr10:5789458-5789710(+)$1	252	188	215	23.5898
gguggaggaCCGAGAUUACUACUAUGA	chr11:129992097-129992351(+)$1	254	189	216	21.8050
UAUGGCCUUUCUCUAUCACGUGGCGUA	chr12:26571977-26572215(-)$1	238	152	179	23.1098
UUGUUGUUGUUUGUUGUGUAUAGCUUG	chrX:128615010-128615262(-)$1	252	77	104	24.2743
aaaagcugccaagaagaagagcaaaca	chr9:139734720-139734986(+)$1	266	61	88	21.0637
GGCUGAACCUCCACCUAUCAAGUCAGC	chr2:32768418-32768656(+)$1	238	8	35	21.5861
UUUUCCCCUAGAAUUUUAAGAAAAAAA	chr11:120318481-120318703(+)$1	222	150	177	22.4635
GAAAUUCAAGGUUUUAAAUGGAAUUAC	chr1:214828510-214828775(+)$1	265	33	60	24.0423
GAAGCCUUUCUUAACAACCAGGUAAGG	chr2:54858575-54858806(+)$1	231	152	179	23.6872
AAGCAUCUGAAGAAGACAAAGAACCUU	chr8:48830735-48830953(-)$1	218	84	111	22.5993
ACUCUUCCAUUCCCAAGCAGAGAAGAG	chr4:88047237-88047517(+)$1	280	186	213	23.6207
GGAUCCAAGGAUAAAAAGAUGGACCAA	chr5:132431689-132431952(+)$1	263	112	139	23.2055
CAGGUGUUUAAGUUCAUCUACUCCUGC	chr9:139351880-139352126(-)$1	246	87	114	22.5586
CGAAAGAGGGAAGAAAGAAAUCGAUCC	chr2:95770311-95770576(-)$1	265	126	153	23.2740
CAGGACAUUGGGAAGGUUUGUGUCUUG	chr4:3161978-3162216(+)$1	238	126	153	22.5631
AUUUUAAUUUUGUUUCUUUUUAAAGGC	chr8:48805774-48805992(-)$1	218	20	47	22.6428
CAGCUUCACCUAGAAAAACAGAAGACU	chr2:63091765-63092002(+)$1	237	115	142	23.0782
UUAGGAAGAAGAAUUUGGACUUGAUGA	chr9:100774624-100774855(+)$1	231	74	101	23.3408
CUAAGCAAAAUCUAGACAAGUGCUACG	chr6:7579493-7579737(+)$1	244	207	234	23.5332
GCUGCUCCAGGCAAGGGAAGAGCUGGG	chr10:105200390-105200697(+)$1	307	245	272	23.4809
UGUGAUGAAAUGGACUGUACAUCACAG	chr1:52940700-52940962(-)$1	262	27	54	24.2468
UGGGCCCUUAGCUCCAAAUGGAUCAGC	chr12:116421152-116421450(-)$1	298	208	235	23.2285
AUACAGCAGAAAAAGAUGAGUUGUAGA	chr9:127998863-127999086(-)$1	223	190	217	20.8724
UUCUGGCAUCUAAGCUAAAGUCGGAAA	chr17:62270952-62271268(-)$1	316	287	314	23.5406
GAGCUGGAAGAAGAGAAUGACCGGCUU	chr3:121414090-121414325(-)$1	235	41	68	24.0945
CAUUGUGGAUCAGAUUUAACACACUAU	chr2:32664625-32664852(+)$1	227	171	198	20.7209
AAUAAGCUAACUCUUUCUGACuuuuuu	chrX:123195541-123195811(+)$1	270	31	58	22.8606
CUUUACUUAUUGUAAUACUGGCUGAAG	chr17:48823798-48824166(+)$1	368	51	78	23.8378
UUCCAGAGACGCUGUAACACUCUGAUU	chrX:128582231-128582466(-)$1	235	49	76	22.8418
UAACAGCAGGGAAAAAAAGGCUGAUAG	chr2:170493558-170493836(+)$1	278	234	261	23.2610
CGGUGCAGAGAAAGAAAAGGGCGACCC	chr16:89348150-89348436(-)$1	286	94	121	20.3878
AGUAUCCCCACCUCAAACCAAGGAUCA	chrX:41091582-41091861(+)$1	279	164	191	21.7897
AAAACAUAACAUCCUAUAAUUGUUUUC	chr2:15467874-15468094(-)$1	220	10	37	20.8358
GAAGAGCCACCUCCAUCCAAAACUUCU	chr17:37680865-37681155(+)$1	290	137	164	21.2709
AGAAUGUAAACCACCCCAAAACCUUCU	chr17:8387447-8387685(-)$1	238	61	88	22.7034
UUUGAUAAGAGCAGCAAAAUAUCGUGA	chr4:151604721-151604969(-)$1	248	156	183	23.7049
UUUUAGGAAAAUGAGCGUACCAAGGAU	chr2:242187645-242187863(-)$1	218	94	121	22.9155
GUCUCAGAUUUCCAAUGCAGCUGUCCA	chr11:118375673-118375932(+)$1	259	110	137	24.0860
UCUCCAGGAAGACCGUGAGCCUGGAGC	chr9:123171408-123171681(-)$1	273	123	150	21.2100
ACGUUAGUUCGAGCCCUCAUGACGGCU	chr3:184049415-184049667(+)$1	252	133	160	23.3201
CUCAAAAACCAAAGAUAAAGUGAACAA	chr16:89356970-89357252(-)$1	282	80	107	21.4886
CUUGUGUAUCACCUGCUAUAACACUAA	chr22:41572731-41572971(+)$1	240	53	80	22.3200
CGUCCAAAGAAGAAAAGGAUUGGAAGA	chr16:72130773-72131010(+)$1	237	63	90	23.5248

#DB
.(((((((...........))))))).	chr1:39896273-39896486(+)$1	1	90	117	22.8478
.(((((.............)))))..(	chr21:34926608-34926883(+)$1	1	34	61	21.0968
((((.((............)).)))))	chr1:179991823-179992062(+)$1	1	128	155	23.8898
....(((................))).	chr16:50359557-50359808(-)$1	1	177	204	20.9706
(((((((............))))))))	chr1:39906621-39906897(+)$1	1	52	79	24.5753
(((((((............))))..((	chr12:49434646-49434919(-)$1	1	33	60	20.6973
(((..((..............))..))	chr5:137721624-137721890(+)$1	1	195	222	22.1748
..(((((...........)))))..))	chr2:54872414-54872663(+)$1	1	42	69	22.6957
(((((((............))))))))	chr7:94749957-94750246(+)$1	1	180	207	21.5867
)))((((............))))(((.	chr9:131339371-131339597(+)$1	1	81	108	23.2145
(((..(((...........)))..)))	chr16:72845703-72845990(-)$1	1	144	171	23.0134
(((((((.............))))).)	chr2:73678608-73678907(+)$1	1	167	194	23.6041
(((((.((...........)).)))))	chr14:73577444-73577695(+)$1	1	45	72	22.4189
.((.(..............).)).)))	chr14:102505329-102505571(+)$1	1	188	215	20.9873
(.(((((..............))))))	chr17:61829199-61829455(-)$1	1	48	75	22.6777
(((((((..............))))))	chr3:184024434-184024670(+)$1	1	43	70	23.0095
(...(((............))))))))	chr2:54884886-54885091(+)$1	1	36	63	24.3018
(((((((............)))))...	chr5:75996799-75997116(+)$1	1	79	106	20.9365
((..(((............)))..)))	chr15:62164086-62164334(-)$1	1	39	66	23.9376
((((.((............)).)))).	chr14:31619233-31619474(-)$1	1	17	44	23.2902
.(((((.............)))))...	chr14:97014086-97014354(+)$1	1	148	175	23.8183
.(((((.............)))))..)	chr10:5789458-5789710(+)$1	1	188	215	23.5898
.((((((...........)).)))).)	chr11:129992097-129992351(+)$1	1	189	216	21.8050
(((((((..............))).))	chr12:26571977-26572215(-)$1	1	152	179	23.1098
..(((((............)))))..)	chrX:128615010-128615262(-)$1	1	77	104	24.2743
....(((............))).....	chr9:139734720-139734986(+)$1	1	61	88	21.0637
.(((((................)))))	chr2:32768418-32768656(+)$1	1	8	35	21.5861
(((((..............))))))))	chr11:120318481-120318703(+)$1	1	150	177	22.4635
(.(((((.............))))).)	chr1:214828510-214828775(+)$1	1	33	60	24.0423
...((((............))))..))	chr2:54858575-54858806(+)$1	1	152	179	23.6872
(((..(((...........)))..)))	chr8:48830735-48830953(-)$1	1	84	111	22.5993
((((((((...........).))))))	chr4:88047237-88047517(+)$1	1	186	213	23.6207
((.((((............))))))).	chr5:132431689-132431952(+)$1	1	112	139	23.2055
((((.((............)).)))).	chr9:139351880-139352126(-)$1	1	87	114	22.5586
((...((.............))....)	chr2:95770311-95770576(-)$1	1	126	153	23.2740
((((((((...........))))))))	chr4:3161978-3162216(+)$1	1	126	153	22.5631
.((((((............))))))))	chr8:48805774-48805992(-)$1	1	20	47	22.6428
.((((((.............)))).))	chr2:63091765-63092002(+)$1	1	115	142	23.0782
(((..(((...........)))..)))	chr9:100774624-100774855(+)$1	1	74	101	23.3408
((.((((.............))))..)	chr6:7579493-7579737(+)$1	1	207	234	23.5332
(((((((............))))..))	chr10:105200390-105200697(+)$1	1	245	272	23.4809
(((((((............)))))))(	chr1:52940700-52940962(-)$1	1	27	54	24.2468
(((..((............)).)))))	chr12:116421152-116421450(-)$1	1	208	235	23.2285
)((((((............))))))..	chr9:127998863-127999086(-)$1	1	190	217	20.8724
(((((((............))))))).	chr17:62270952-62271268(-)$1	1	287	314	23.5406
(((((((.............)))))))	chr3:121414090-121414325(-)$1	1	41	68	24.0945
)...(((............)))(((((	chr2:32664625-32664852(+)$1	1	171	198	20.7209
((.((((...........).))).)))	chrX:123195541-123195811(+)$1	1	31	58	22.8606
(((((((............)).)))))	chr17:48823798-48824166(+)$1	1	51	78	23.8378
(..(((((...........))))))))	chrX:128582231-128582466(-)$1	1	49	76	22.8418
((.((((............)))).)))	chr2:170493558-170493836(+)$1	1	234	261	23.2610
.(((((..............)).))).	chr16:89348150-89348436(-)$1	1	94	121	20.3878
.(.((((..............))))).	chrX:41091582-41091861(+)$1	1	164	191	21.7897
((((((..............)))))))	chr2:15467874-15468094(-)$1	1	10	37	20.8358
((.(((................))).)	chr17:37680865-37681155(+)$1	1	137	164	21.2709
((((.((.............)).))))	chr17:8387447-8387685(-)$1	1	61	88	22.7034
(..((((............))))))))	chr4:151604721-151604969(-)$1	1	156	183	23.7049
((((.((............))))))))	chr2:242187645-242187863(-)$1	1	94	121	22.9155
(((((((.............)))...)	chr11:118375673-118375932(+)$1	1	110	137	24.0860
.(((((((...........))))))).	chr9:123171408-123171681(-)$1	1	123	150	21.2100
.(((((.............))))))))	chr3:184049415-184049667(+)$1	1	133	160	23.3201
.(((................)))...)	chr16:89356970-89357252(-)$1	1	80	107	21.4886
...((((.............))))...	chr22:41572731-41572971(+)$1	1	53	80	22.3200
(((((((............)))))...	chr16:72130773-72131010(+)$1	1	63	90	23.5248

#PSSM
d : 0.14	e : 0.12	g : 0.10	b : 0.07	[ : 0.07	f : 0.06	# : 0.04	: : 0.04	F : 0.04	h : 0.04	" : 0.04	! : 0.03	i : 0.03	c : 0.03	' : 0.03	= : 0.01	$ : 0.01	+ : 0.01	
e : 0.15	g : 0.14	d : 0.14	f : 0.09	b : 0.07	! : 0.06	c : 0.06	h : 0.04	# : 0.03	F : 0.03	[ : 0.03	" : 0.03	i : 0.03	= : 0.01	+ : 0.01	: : 0.01	a : 0.01	
e : 0.26	g : 0.14	d : 0.09	[ : 0.09	f : 0.07	h : 0.04	" : 0.04	! : 0.04	# : 0.03	b : 0.03	i : 0.03	c : 0.03	= : 0.01	F : 0.01	+ : 0.01	: : 0.01	
e : 0.25	d : 0.23	g : 0.12	! : 0.09	f : 0.06	c : 0.06	h : 0.03	" : 0.03	i : 0.03	# : 0.01	= : 0.01	[ : 0.01	+ : 0.01	: : 0.01	
e : 0.23	d : 0.18	c : 0.14	g : 0.10	[ : 0.07	! : 0.07	h : 0.03	i : 0.03	f : 0.03	= : 0.01	a : 0.01	" : 0.01	b : 0.01	y : 0.01	
e : 0.20	c : 0.18	b : 0.17	d : 0.17	g : 0.10	h : 0.03	w : 0.03	f : 0.03	= : 0.01	[ : 0.01	i : 0.01	y : 0.01	
b : 0.17	d : 0.17	c : 0.15	e : 0.12	g : 0.10	v : 0.06	w : 0.06	y : 0.04	f : 0.03	= : 0.01	h : 0.01	i : 0.01	a : 0.01	
u : 0.40	v : 0.20	w : 0.14	y : 0.06	t : 0.04	c : 0.04	g : 0.03	b : 0.01	a : 0.01	i : 0.01	e : 0.01	
u : 0.40	v : 0.20	t : 0.18	w : 0.14	y : 0.06	
u : 0.40	v : 0.20	t : 0.18	w : 0.14	y : 0.06	
u : 0.40	v : 0.20	t : 0.18	w : 0.14	y : 0.06	
u : 0.40	v : 0.20	t : 0.18	w : 0.14	y : 0.06	
u : 0.40	v : 0.20	t : 0.18	w : 0.14	y : 0.06	
u : 0.40	v : 0.20	t : 0.18	w : 0.14	y : 0.06	
u : 0.40	v : 0.20	t : 0.18	w : 0.14	y : 0.06	
u : 0.40	v : 0.20	t : 0.18	w : 0.14	y : 0.06	
u : 0.40	v : 0.20	t : 0.18	w : 0.14	y : 0.06	
u : 0.40	v : 0.20	t : 0.18	w : 0.14	y : 0.06	
u : 0.40	v : 0.20	t : 0.14	w : 0.14	y : 0.06	e : 0.01	b : 0.01	a : 0.01	
e : 0.14	v : 0.14	b : 0.12	d : 0.10	w : 0.10	c : 0.10	g : 0.06	y : 0.06	a : 0.03	i : 0.03	f : 0.03	= : 0.01	h : 0.01	] : 0.01	
e : 0.17	b : 0.15	d : 0.15	c : 0.15	g : 0.07	w : 0.07	y : 0.04	] : 0.04	h : 0.03	i : 0.03	f : 0.03	= : 0.01	
e : 0.18	d : 0.18	c : 0.17	g : 0.10	] : 0.09	b : 0.07	y : 0.04	f : 0.04	h : 0.03	i : 0.03	= : 0.01	
e : 0.26	d : 0.21	g : 0.10	c : 0.07	f : 0.07	2 : 0.06	b : 0.03	h : 0.03	i : 0.03	] : 0.03	y : 0.01	= : 0.01	> : 0.01	4 : 0.01	
e : 0.25	2 : 0.12	d : 0.12	g : 0.10	c : 0.09	f : 0.09	] : 0.04	h : 0.03	i : 0.03	3 : 0.03	= : 0.01	: : 0.01	> : 0.01	4 : 0.01	
e : 0.15	g : 0.12	2 : 0.10	d : 0.10	f : 0.10	c : 0.07	: : 0.04	h : 0.04	3 : 0.04	= : 0.03	] : 0.03	> : 0.03	i : 0.03	4 : 0.01	b : 0.01	7 : 0.01	
g : 0.14	e : 0.14	d : 0.10	f : 0.07	c : 0.06	h : 0.06	] : 0.06	: : 0.04	3 : 0.04	2 : 0.04	b : 0.04	= : 0.03	a : 0.03	> : 0.03	i : 0.03	4 : 0.01	7 : 0.01	
e : 0.15	d : 0.15	: : 0.10	b : 0.09	f : 0.09	g : 0.07	h : 0.06	c : 0.04	4 : 0.03	= : 0.03	3 : 0.03	> : 0.03	i : 0.03	7 : 0.03	[ : 0.01	

#score	1454.328912384887
#seq	64
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_CDS_m3_run1.txt

#BEAR
d[eeeeeooooooeeeeedd	chr10:75873820-75874072(+)$1	252	139	159	11.7283
iiiiiiiooooooiiiiiii	chr5:150073650-150073930(-)$1	280	166	186	12.4803
ee[ddddoooooodddd333	chr17:37438966-37439218(-)$1	252	204	224	12.1743
ggggg[aooooooa]ggggg	chr8:103307869-103308117(-)$1	248	125	145	12.6639
eee[cccooooooccc]eee	chr2:203154936-203155160(+)$1	224	186	206	12.6045
[ffffffooooooffffff]	chr15:65297129-65297391(-)$1	262	226	246	11.5770
gggggggooooooggggggg	chr1:118476984-118477246(+)$1	262	239	259	12.5930
dffffffooooooffffff]	chr5:61778817-61779098(+)$1	281	256	276	11.4379
gggggggooooooggggggg	chr1:185112992-185113317(-)$1	325	50	70	12.5930
""eeeeeooooooeeeee22	chr14:23777855-23778186(+)$1	331	187	207	11.6652
!ffffffooooooffffff]	chr5:102895040-102895293(-)$1	253	197	217	11.6099
===[cccooooooccc====	chr16:15091497-15091740(+)$1	243	21	41	13.1436
eee[a[aooooooa]aeeee	chr9:116971873-116972110(+)$1	237	13	33	12.0362
gggggggooooooggggggg	chrX:41069650-41069901(+)$1	251	108	128	12.5930
!!cccbboooooobb]ccc4	chr13:39618136-39618394(+)$1	258	189	209	11.4456
gggg[bboooooobbggggg	chr15:100269797-100270056(-)$1	259	191	211	11.6690
#ffffffooooooffffff5	chr2:160621012-160621309(+)$1	297	253	273	10.7657
ccc[cccooooooccc]ccc	chr16:2279458-2279709(+)$1	251	78	98	12.6363
$a[ddddoooooodddd]a5	chr4:139104303-139104574(-)$1	271	216	236	11.0782
ee!!cccooooooccc]eee	chr5:32417732-32418065(-)$1	333	170	190	12.6778
c[eeeeeooooooeeeee33	chr8:37996193-37996466(+)$1	273	197	217	12.2004
iiiiiiiooooooiiiiiii	chr2:32713545-32713804(+)$1	259	108	128	12.4803
bb[ddddoooooodddd]bb	chr11:67013336-67013618(+)$1	282	187	207	10.8244
gggggggooooooggggggg	chr5:37701023-37701317(+)$1	294	52	72	12.5930
##eeeeeooooooeeeeedd	chr3:185797561-185797832(-)$1	271	44	64	11.6361
cc!!cccooooooccc22cc	chr17:29548715-29549000(+)$1	285	177	197	12.3883
ggg[cccooooooccc22gg	chr2:27448461-27448701(+)$1	240	67	87	12.6104
fffff[aooooooaffffff	chr2:73659199-73659478(+)$1	279	134	154	11.5384
eee"""aooooooa333eee	chr12:22670930-22671187(-)$1	257	57	77	11.7606
ccc[cccoooooocccccc5	chr8:38148044-38148353(-)$1	309	194	214	11.9036
ggggg[aooooooa]ggggg	chr2:55528258-55528536(-)$1	278	213	233	12.6639
d!!ddddoooooodddd]dd	chr2:211340980-211341255(-)$1	275	226	246	11.9299
d!!ddddoooooodddd22d	chr15:40628877-40629132(-)$1	255	219	239	11.6373
b"""cccooooooccc]bbe	chrX:30718422-30718675(+)$1	253	148	168	11.6272
eeee[bboooooobbeeeee	chr22:30398703-30399013(+)$1	310	21	41	11.0470
ddddcccooooooccc]ddd	chr2:32422667-32422908(+)$1	241	66	86	11.8029
dd[ddddoooooodddd]dd	chr7:23401227-23401477(-)$1	250	217	237	11.6701
=======oooooo=======	chr4:25396341-25396594(+)$1	253	61	81	12.8080
gggggggooooooggggggg	chr10:5924991-5925249(-)$1	258	9	29	12.5930
d[eeeeeooooooeeeee]d	chr6:45290527-45290822(-)$1	295	161	181	11.8633
ddddcccooooooccc]ddd	chr6:157495025-157495295(+)$1	270	167	187	11.8029
ee[a!!aooooooa22aeee	chr16:14327882-14328151(+)$1	269	128	148	11.4033
!!eeeeeooooooeeeee22	chr16:70714798-70715026(-)$1	228	139	159	11.8394
c[ccc[aooooooa]ccc]c	chr3:100067534-100067780(+)$1	246	53	73	12.3672
ff[ddddoooooodddd333	chr8:8861466-8861724(+)$1	258	63	83	12.0948
iiiiiiiooooooiiiiiii	chr12:72050189-72050455(-)$1	266	165	185	12.4803
gggggggooooooggggggg	chr2:118860658-118860919(+)$1	261	59	79	12.5930
gg[ddddooooooddddggg	chr1:161183820-161184069(+)$1	249	85	105	12.1926
!!eeeeeooooooeeeee]h	chr5:145522964-145523224(-)$1	260	107	127	11.9228
dddddddoooooodddd]dd	chr3:185390309-185390574(-)$1	265	160	180	11.3324
eee[cccooooooccc]eee	chr6:166743591-166743844(-)$1	253	70	90	12.6045
c!!ddddoooooodddd]cc	chr4:76720655-76720909(+)$1	254	137	157	12.1608
eeeee[aooooooaeeeee5	chr19:38866665-38866920(+)$1	255	177	197	11.3786
"""ddddoooooodddd]dd	chr9:15185274-15185541(-)$1	267	208	228	11.8072
ccc[cccoooooocccccc:	chr11:59344050-59344325(-)$1	275	81	101	11.6486
fff[cccooooooccc333f	chr10:21971031-21971286(+)$1	255	225	245	12.5196
ddcccbboooooobb]ccc2	chr7:139797295-139797563(-)$1	268	221	241	10.8171
ccc[cccooooooccccccc	chr11:9214989-9215247(-)$1	258	159	179	12.5212
[ffffffooooooffffffb	chr6:135308771-135309042(-)$1	271	187	207	11.1735
cffffffooooooffffff]	chr3:25674145-25674391(-)$1	246	199	219	11.5087

#otherMatches

#Seq PSSM
GCAGCCAAGCGCAUGGCUCU	chr10:75873820-75874072(+)$1	252	139	159	11.7283
CUGUUGUGCAGAGACAGCAG	chr5:150073650-150073930(-)$1	280	166	186	12.4803
CUCAAGGCCUUAUUCUUAAA	chr17:37438966-37439218(-)$1	252	204	224	12.1743
AACAGCCUACUGUGAUUGUU	chr8:103307869-103308117(-)$1	248	125	145	12.6639
GAAUUAGGAAAAAUUAUUUC	chr2:203154936-203155160(+)$1	224	186	206	12.6045
UCAUAGUUGUUUUACUAUGU	chr15:65297129-65297391(-)$1	262	226	246	11.5770
UGUGACCUUCAAUGGUCACA	chr1:118476984-118477246(+)$1	262	239	259	12.5930
GAUGAUUGUCAAAAAUUAUG	chr5:61778817-61779098(+)$1	281	256	276	11.4379
AUAUUUAUUGUUUUAGAUGU	chr1:185112992-185113317(-)$1	325	50	70	12.5930
UACGGGGACGGGGCCCUGGA	chr14:23777855-23778186(+)$1	331	187	207	11.6652
AUAGCUAAUUUACUAGCUAC	chr5:102895040-102895293(-)$1	253	197	217	11.6099
GAAAUUAUGCACUUAAUUUU	chr16:15091497-15091740(+)$1	243	21	41	13.1436
CUGCGGCAGGUUGGGCCAGC	chr9:116971873-116972110(+)$1	237	13	33	12.0362
UAGGCUUUGGGGUGAGCCUG	chrX:41069650-41069901(+)$1	251	108	128	12.5930
UACAGCGUCAUUGUGUCUGG	chr13:39618136-39618394(+)$1	258	189	209	11.4456
UCCAGUGAGAAACCAUGGGA	chr15:100269797-100270056(-)$1	259	191	211	11.6690
UGUUCUGCCAAAUUAGAGCU	chr2:160621012-160621309(+)$1	297	253	273	10.7657
AGACGACUCCCCUGUUUUCU	chr16:2279458-2279709(+)$1	251	78	98	12.6363
CAGGUGAGUGAGUUCAUGUA	chr4:139104303-139104574(-)$1	271	216	236	11.0782
UUCAUACUCAUAUGUAAGGU	chr5:32417732-32418065(-)$1	333	170	190	12.6778
CCUGUGAGUAACAUUACAAA	chr8:37996193-37996466(+)$1	273	197	217	12.2004
GUUGGAGUCACUUCUCCAAU	chr2:32713545-32713804(+)$1	259	108	128	12.4803
CUUUGAGAAGAAACUCAUGG	chr11:67013336-67013618(+)$1	282	187	207	10.8244
AGUUUAGCAGACUCUAAACU	chr5:37701023-37701317(+)$1	294	52	72	12.5930
UCUGCCCACCUCAGGGCAUG	chr3:185797561-185797832(-)$1	271	44	64	11.6361
AUAGCAUUGAUUUGUGGAAU	chr17:29548715-29549000(+)$1	285	177	197	12.3883
CAGUAGGAAAUAACCUGUUU	chr2:27448461-27448701(+)$1	240	67	87	12.6104
AGAGUCGGAAUAUCACUCUU	chr2:73659199-73659478(+)$1	279	134	154	11.5384
CCACCUGUCAAGUCCUUUGG	chr12:22670930-22671187(-)$1	257	57	77	11.7606
GCCACUGAACAUCCAGGGCC	chr8:38148044-38148353(-)$1	309	194	214	11.9036
UUUAGAGAGUACACAUUAAA	chr2:55528258-55528536(-)$1	278	213	233	12.6639
GAUAUGUCUGCCUGCAUCCC	chr2:211340980-211341255(-)$1	275	226	246	11.9299
GCCGGCUGCUAUGGGCCUCU	chr15:40628877-40629132(-)$1	255	219	239	11.6373
GUUUCAUCACCAAGUGUCUC	chrX:30718422-30718675(+)$1	253	148	168	11.6272
AAAGCGCCUCAUUGCCUUUA	chr22:30398703-30399013(+)$1	310	21	41	11.0470
GAGUUCUGCUAAUGGAUACU	chr2:32422667-32422908(+)$1	241	66	86	11.8029
AAAGAAAACUAACUUUUAUU	chr7:23401227-23401477(-)$1	250	217	237	11.6701
AUAUAAUAUCCUGAUUGUAU	chr4:25396341-25396594(+)$1	253	61	81	12.8080
GAGUUGUGCGUAAACAGCUC	chr10:5924991-5925249(-)$1	258	9	29	12.5930
AUGGACUCAUGGUGGUCUUU	chr6:45290527-45290822(-)$1	295	161	181	11.8633
UGCCUCUCAAAGCAGACGGC	chr6:157495025-157495295(+)$1	270	167	187	11.8029
AGUGUCCCCAACAGUUCCUG	chr16:14327882-14328151(+)$1	269	128	148	11.4033
GAAGCUGCAUUCCCAGCUGA	chr16:70714798-70715026(-)$1	228	139	159	11.8394
GGACUGGUUUUGUUGAGUGC	chr3:100067534-100067780(+)$1	246	53	73	12.3672
GCCUGCCUCCCUUGGUAAUU	chr8:8861466-8861724(+)$1	258	63	83	12.0948
ucagcgugaauggauguuga	chr12:72050189-72050455(-)$1	266	165	185	12.4803
AGUGUUGCCAGUACAACAUU	chr2:118860658-118860919(+)$1	261	59	79	12.5930
GAUAAGUAACAUCACUUUUU	chr1:161183820-161184069(+)$1	249	85	105	12.1926
UCAGGCACUCACCUGCCUUG	chr5:145522964-145523224(-)$1	260	107	127	11.9228
GCAUCUUUUCAACAGGACUG	chr3:185390309-185390574(-)$1	265	160	180	11.3324
AUUAAGACUAUAUUCUAAAU	chr6:166743591-166743844(-)$1	253	70	90	12.6045
AGAGUUGGAUUAUUAAUGUU	chr4:76720655-76720909(+)$1	254	137	157	12.1608
AGCUGACCAAACAGCAGCUA	chr19:38866665-38866920(+)$1	255	177	197	11.3786
CUCGGCGUUACUCCGCCUCC	chr9:15185274-15185541(-)$1	267	208	228	11.8072
UGCAUGGAGAAUGCCAGCAC	chr11:59344050-59344325(-)$1	275	81	101	11.6486
UGAAAGCUAGCAUGUUCUAU	chr10:21971031-21971286(+)$1	255	225	245	12.5196
ACGCCUGAGACCCCAUGGCU	chr7:139797295-139797563(-)$1	268	221	241	10.8171
CAUUCCAAUGGCCUGGAUGA	chr11:9214989-9215247(-)$1	258	159	179	12.5212
ACGAGAGCAUGGACUCUUGG	chr6:135308771-135309042(-)$1	271	187	207	11.1735
CCAUUUCAAGUAAGGGAUGU	chr3:25674145-25674391(-)$1	246	199	219	11.5087

#DB
(.(((((......)))))))	chr10:75873820-75874072(+)$1	1	139	159	11.7283
(((((((......)))))))	chr5:150073650-150073930(-)$1	1	166	186	12.4803
((.((((......))))...	chr17:37438966-37439218(-)$1	1	204	224	12.1743
(((((.(......).)))))	chr8:103307869-103308117(-)$1	1	125	145	12.6639
(((.(((......))).)))	chr2:203154936-203155160(+)$1	1	186	206	12.6045
.((((((......)))))).	chr15:65297129-65297391(-)$1	1	226	246	11.5770
(((((((......)))))))	chr1:118476984-118477246(+)$1	1	239	259	12.5930
(((((((......)))))).	chr5:61778817-61779098(+)$1	1	256	276	11.4379
(((((((......)))))))	chr1:185112992-185113317(-)$1	1	50	70	12.5930
..(((((......)))))..	chr14:23777855-23778186(+)$1	1	187	207	11.6652
.((((((......)))))).	chr5:102895040-102895293(-)$1	1	197	217	11.6099
(((.(((......)))))))	chr16:15091497-15091740(+)$1	1	21	41	13.1436
(((.(.(......).)))))	chr9:116971873-116972110(+)$1	1	13	33	12.0362
(((((((......)))))))	chrX:41069650-41069901(+)$1	1	108	128	12.5930
..(((((......)).))).	chr13:39618136-39618394(+)$1	1	189	209	11.4456
((((.((......)))))))	chr15:100269797-100270056(-)$1	1	191	211	11.6690
.((((((......)))))).	chr2:160621012-160621309(+)$1	1	253	273	10.7657
(((.(((......))).)))	chr16:2279458-2279709(+)$1	1	78	98	12.6363
.(.((((......)))).).	chr4:139104303-139104574(-)$1	1	216	236	11.0782
((..(((......))).)))	chr5:32417732-32418065(-)$1	1	170	190	12.6778
(.(((((......)))))..	chr8:37996193-37996466(+)$1	1	197	217	12.2004
(((((((......)))))))	chr2:32713545-32713804(+)$1	1	108	128	12.4803
((.((((......)))).))	chr11:67013336-67013618(+)$1	1	187	207	10.8244
(((((((......)))))))	chr5:37701023-37701317(+)$1	1	52	72	12.5930
..(((((......)))))))	chr3:185797561-185797832(-)$1	1	44	64	11.6361
((..(((......)))..))	chr17:29548715-29549000(+)$1	1	177	197	12.3883
(((.(((......)))..))	chr2:27448461-27448701(+)$1	1	67	87	12.6104
(((((.(......)))))))	chr2:73659199-73659478(+)$1	1	134	154	11.5384
(((...(......)...)))	chr12:22670930-22671187(-)$1	1	57	77	11.7606
(((.(((......)))))).	chr8:38148044-38148353(-)$1	1	194	214	11.9036
(((((.(......).)))))	chr2:55528258-55528536(-)$1	1	213	233	12.6639
(..((((......)))).))	chr2:211340980-211341255(-)$1	1	226	246	11.9299
(..((((......))))..)	chr15:40628877-40629132(-)$1	1	219	239	11.6373
(...(((......))).)))	chrX:30718422-30718675(+)$1	1	148	168	11.6272
((((.((......)))))))	chr22:30398703-30399013(+)$1	1	21	41	11.0470
(((((((......))).)))	chr2:32422667-32422908(+)$1	1	66	86	11.8029
((.((((......)))).))	chr7:23401227-23401477(-)$1	1	217	237	11.6701
(((((((......)))))))	chr4:25396341-25396594(+)$1	1	61	81	12.8080
(((((((......)))))))	chr10:5924991-5925249(-)$1	1	9	29	12.5930
(.(((((......))))).)	chr6:45290527-45290822(-)$1	1	161	181	11.8633
(((((((......))).)))	chr6:157495025-157495295(+)$1	1	167	187	11.8029
((.(..(......)..))))	chr16:14327882-14328151(+)$1	1	128	148	11.4033
..(((((......)))))..	chr16:70714798-70715026(-)$1	1	139	159	11.8394
(.(((.(......).))).)	chr3:100067534-100067780(+)$1	1	53	73	12.3672
((.((((......))))...	chr8:8861466-8861724(+)$1	1	63	83	12.0948
(((((((......)))))))	chr12:72050189-72050455(-)$1	1	165	185	12.4803
(((((((......)))))))	chr2:118860658-118860919(+)$1	1	59	79	12.5930
((.((((......)))))))	chr1:161183820-161184069(+)$1	1	85	105	12.1926
..(((((......))))).)	chr5:145522964-145523224(-)$1	1	107	127	11.9228
(((((((......)))).))	chr3:185390309-185390574(-)$1	1	160	180	11.3324
(((.(((......))).)))	chr6:166743591-166743844(-)$1	1	70	90	12.6045
(..((((......)))).))	chr4:76720655-76720909(+)$1	1	137	157	12.1608
(((((.(......)))))).	chr19:38866665-38866920(+)$1	1	177	197	11.3786
...((((......)))).))	chr9:15185274-15185541(-)$1	1	208	228	11.8072
(((.(((......)))))).	chr11:59344050-59344325(-)$1	1	81	101	11.6486
(((.(((......)))...)	chr10:21971031-21971286(+)$1	1	225	245	12.5196
(((((((......)).))).	chr7:139797295-139797563(-)$1	1	221	241	10.8171
(((.(((......)))))))	chr11:9214989-9215247(-)$1	1	159	179	12.5212
.((((((......)))))))	chr6:135308771-135309042(-)$1	1	187	207	11.1735
(((((((......)))))).	chr3:25674145-25674391(-)$1	1	199	219	11.5087

#PSSM
g : 0.18	d : 0.16	e : 0.15	c : 0.15	! : 0.06	i : 0.05	f : 0.05	[ : 0.03	" : 0.03	= : 0.03	# : 0.03	b : 0.03	$ : 0.01	
g : 0.18	e : 0.15	f : 0.15	! : 0.09	c : 0.08	d : 0.08	[ : 0.06	i : 0.05	" : 0.05	= : 0.03	a : 0.01	b : 0.01	# : 0.01	
e : 0.21	g : 0.16	f : 0.13	[ : 0.11	c : 0.11	! : 0.08	i : 0.05	d : 0.05	= : 0.03	" : 0.03	
d : 0.21	[ : 0.16	e : 0.15	g : 0.15	f : 0.11	i : 0.05	c : 0.05	! : 0.03	" : 0.03	= : 0.01	a : 0.01	
c : 0.28	d : 0.18	e : 0.13	g : 0.13	f : 0.11	i : 0.05	[ : 0.03	a : 0.01	" : 0.01	= : 0.01	! : 0.01	
c : 0.23	d : 0.18	e : 0.11	[ : 0.09	f : 0.09	g : 0.09	b : 0.06	i : 0.05	" : 0.01	= : 0.01	! : 0.01	
c : 0.23	d : 0.18	a : 0.13	e : 0.11	f : 0.09	g : 0.09	b : 0.06	i : 0.05	= : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
c : 0.23	d : 0.18	a : 0.13	e : 0.11	f : 0.09	g : 0.09	b : 0.06	i : 0.05	= : 0.01	
c : 0.23	d : 0.18	e : 0.13	f : 0.11	g : 0.09	] : 0.06	b : 0.06	i : 0.05	3 : 0.01	= : 0.01	2 : 0.01	
c : 0.24	d : 0.18	e : 0.15	g : 0.15	f : 0.11	i : 0.05	] : 0.03	a : 0.01	3 : 0.01	= : 0.01	2 : 0.01	
d : 0.18	e : 0.16	g : 0.15	] : 0.11	f : 0.11	c : 0.09	i : 0.05	= : 0.03	2 : 0.03	3 : 0.03	a : 0.01	
e : 0.24	g : 0.16	f : 0.11	c : 0.11	] : 0.11	i : 0.05	3 : 0.05	2 : 0.05	= : 0.03	d : 0.03	b : 0.01	
g : 0.18	d : 0.13	e : 0.13	c : 0.13	f : 0.11	3 : 0.06	i : 0.05	2 : 0.05	] : 0.05	= : 0.03	b : 0.03	a : 0.01	
g : 0.18	d : 0.16	e : 0.13	c : 0.08	] : 0.06	5 : 0.06	i : 0.05	3 : 0.05	2 : 0.05	= : 0.03	b : 0.03	f : 0.03	4 : 0.01	h : 0.01	: : 0.01	

#score	718.922115589331
#seq	60
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_UTR_m2_run1.txt

#BEAR
[eeeee[gggggggmmmmggggggg]eeee	chr9:84303808-84304044(-)$1	236	100	130	11.8122
iccc[ccc[a!!bbmmmmbb22a]ccc22c	chr7:105517513-105517797(+)$1	284	112	142	11.4949
ccc[ffffff[cccmmmmcccffffff]cc	chr17:76202997-76203284(+)$1	287	60	90	11.8533
ffffff[a"""cccmmmmccc333a]ffff	chr12:109994524-109994803(-)$1	279	135	165	13.8970
"""bb[dddd[cccmmmmcccdddd22bb4	chr19:15348942-15349225(-)$1	283	30	60	10.5318
[ggggggg"""cccmmmmcccggggggg]b	chr16:70433037-70433278(-)$1	241	186	216	13.5813
2aa[gggggggcccmmmmccc]ggggggg]	chr17:18167813-18168049(+)$1	236	76	106	12.7979
a!!cccccc!!cccmmmmccc]ccc]ccc2	chr7:72985047-72985322(-)$1	275	23	53	13.4393
"bb!!gggggggooooooggggggg4444b	chr1:11982340-11982626(-)$1	286	68	98	8.8489
ffff[dddd!!cccmmmmccc333dddd]f	chr10:79800295-79800541(+)$1	246	28	58	13.1239
hh[ddddddddcccmmmmccc]dddd4444	chr11:70053042-70053301(+)$1	259	112	142	10.8892
++++==========mmmm==========66	chr15:70389951-70390213(-)$1	262	55	85	9.7886
c!!ffffff!!cccmmmmccc333ffffff	chr18:56063313-56063645(+)$1	332	243	273	13.4273
f[gggggggeeeeemmmmeeeee333gggg	chr20:43058851-43059089(+)$1	238	129	159	11.3412
ccc####gggggggmmmmggggggg333cc	chr19:33791914-33792151(-)$1	237	65	95	11.8958
ffffcccgggggggmmmmggggggg]ccc:	chr6:1312835-1313087(+)$1	252	186	216	11.0253
eeeeeee[ffffffmmmmffffff]eeeee	chrX:108976342-108976592(-)$1	250	187	217	9.8535
'''===========mmmm===========>	chr20:54978707-54978946(+)$1	239	85	115	11.4560
ggggggg"""ddddmmmmdddd333ggggg	chr18:3457454-3457707(+)$1	253	31	61	12.5675
d[a[ffffff"""ammmma333ffffff]a	chr20:44518934-44519150(-)$1	216	85	115	11.2584
""hhhhhhhh[cccmmmmccc]hhhhhhhh	chr16:22337050-22337308(+)$1	258	98	128	10.0682
eeee!!dddd!!bbmmmmbbdddd]eeeee	chr17:79525742-79526002(-)$1	260	199	229	10.2884
[dddd!!bb[a[bbmmmmbb]a]bb]dddd	chr12:76425043-76425325(-)$1	282	121	151	9.8495
ffffff####ddddmmmmdddd22ffffff	chr16:22337353-22337596(+)$1	243	8	38	11.1397
ggggggg"""ddddmmmmdddd]ggggggg	chr20:61919382-61919645(+)$1	263	223	253	12.1095
ooocccccc!!cccmmmmccc22ccc:fff	chr2:20647918-20648160(+)$1	242	125	155	11.1875
bdddd[accc[cccmmmmcccccc]a]ddd	chr12:89745848-89746133(-)$1	285	216	246	11.5473
ffff[a[a[bb[ccclllccc]bba]a]ff	chr2:128620812-128621174(-)$1	362	13	43	9.4369
eeeeeeeeee[cccmmmmccc]eeeeeccc	chr14:69256491-69256753(-)$1	262	76	106	12.0005
eeeeebbgggggggmmmmggggggg22bb]	chr6:43473425-43473666(+)$1	241	137	167	10.2921
iiiiiiiii!!cccmmmmccc22iiiiiii	chr1:109235019-109235292(+)$1	273	231	261	13.7781
###dddd[ccc[ccclllccc]ccc]dddd	chr2:61404599-61404826(+)$1	227	13	43	9.5793
ddd[bb!!ccc[bbmmmmbb22ccc4444b	chr21:40194845-40195103(+)$1	258	26	56	10.6547
####dddda[ddddmmmmdddd]a]dddd5	chr17:70117350-70117570(+)$1	220	182	212	10.0622
"""===========mmmm===========4	chr1:234742767-234743037(-)$1	270	206	236	13.4179
eee[bb[a!!ddddmmmmdddd22a]bb]e	chr17:44249195-44249464(-)$1	269	142	172	10.9323
ffffff!!ccccccmmmmccc]ccc22fff	chr7:150934455-150934695(+)$1	240	106	136	12.6055
dd[ggggggg[aooooooa]gggggggddd	chr6:32939469-32939688(+)$1	219	132	162	8.7590
ccc!!bb[ccccccmmmmccc]cccbbccc	chr6:138202284-138202563(+)$1	279	128	158	11.9341
!!dddd!!acccbbmmmmbb]ccc]a4444	chr14:34419329-34419591(-)$1	262	177	207	11.4277
ffff[ccc!!a[bbmmmmbb]a22ccc]ff	chr8:126011095-126011347(+)$1	252	153	183	11.8958
:ffffff####cccmmmmccc4444fffff	chr3:196674923-196675180(-)$1	257	191	221	12.0945
c[ffffff[a[cccmmmmcccaffffff99	chr10:88854235-88854481(-)$1	246	78	108	11.3004
eeee[dddd[ddddmmmmdddd22dddd]e	chr1:27238088-27238296(-)$1	208	52	82	10.5182
ccc[eeeee!!ccclllccc22eeeeeccc	chr19:10225415-10225666(+)$1	251	103	133	9.6450
fffffeeeee!!bbmmmmbb22eeeee22f	chr14:31676599-31676816(-)$1	217	164	194	10.2858
eeee[eeeee[cccmmmmccc4444eeeee	chr5:6714863-6715111(+)$1	248	5	35	12.5157
gg####ccc[ddddmmmmdddd4444ccc4	chr16:70406384-70406695(+)$1	311	244	274	11.7154
!ggggggg[bb[bbmmmmbb]bbggggggg	chr9:38620177-38620474(-)$1	297	164	194	10.7861
cggggggg!!ddddmmmmdddd4444gggg	chr12:498164-498424(-)$1	260	4	34	12.2811
###eeeee[eeeeemmmmeeeee22eeeee	chr22:21304115-21304404(+)$1	289	5	35	9.9950
=======[ffffffmmmmffffff]=====	chr6:11190648-11190879(-)$1	231	139	169	11.1994
[eeeee####cccammmma]ccceeeee]b	chr17:77081884-77082155(+)$1	271	151	181	11.7034
fff!!eeeeeddddmmmmdddd]eeeee44	chr7:72984825-72985136(-)$1	311	111	141	10.8867
:ffffff[ccccccmmmmccc22ccc]fff	chr19:13264766-13265008(+)$1	242	192	222	11.6981
ii:===========mmmm===========:	chr22:37425605-37425878(+)$1	273	209	239	11.3335
dddd[ccc[bbcccmmmmccc]bbcccddd	chr14:65405921-65406158(-)$1	237	145	175	11.0255
hhhccc"""eeeeemmmmeeeee333ccc4	chr6:37141776-37142066(+)$1	290	249	279	10.6046
ffff[dddd!!cccmmmmccc333dddd]f	chr10:79800268-79800495(+)$1	227	55	85	13.1239

#otherMatches

#Seq PSSM
UGCGGGACUGCUCUCGGUGGAGUAGCCCCG	chr9:84303808-84304044(-)$1	236	100	130	11.8122
GGACUUUGGACCAUGGAGAUUCUGCAGUUG	chr7:105517513-105517797(+)$1	284	112	142	11.4949
CUUGGGAAGCCUCUCCAAAGAGCUUUCGGA	chr17:76202997-76203284(+)$1	287	60	90	11.8533
AGGGACUGUGACCCUUUGGGGAUUCUGUCC	chr12:109994524-109994803(-)$1	279	135	165	13.8970
UUUUCUGAGCGCACCUAGGUGGCUUCUGAC	chr19:15348942-15349225(-)$1	283	30	60	10.5318
ACUGCGGAAAGGAUCUCGAUCUCUGCAGCG	chr16:70433037-70433278(-)$1	241	186	216	13.5813
ACGGAGGAGGCCUUGGGUGAGCGCUUCCUG	chr17:18167813-18168049(+)$1	236	76	106	12.7979
GGCUUCUGUCUCCAAGGAUGGUACAUGGAA	chr7:72985047-72985322(-)$1	275	23	53	13.4393
ACCAGAGAGCGCGCACAAGUGUUUUGAGAG	chr1:11982340-11982626(-)$1	286	68	98	8.8489
AGAAUUUUAAAGGCAGUUGUUGACUAAACU	chr10:79800295-79800541(+)$1	246	28	58	13.1239
GUGGGGAGACCUGGUUGGCCGUGGUCCAGC	chr11:70053042-70053301(+)$1	259	112	142	10.8892
UUUGgugugugugugugugcgugcgcgcgu	chr15:70389951-70390213(-)$1	262	55	85	9.7886
CAUUUGCCUAACAGACUUUUGCAGAGGCGA	chr18:56063313-56063645(+)$1	332	243	273	13.4273
ACCUCAUCCUCCUUCUUCAGGGACUUGGGU	chr20:43058851-43059089(+)$1	238	129	159	11.3412
CUUCCUCUGCGCCGGACUUGGUGCGUCUAA	chr19:33791914-33792151(-)$1	237	65	95	11.8958
CGCCGUCCCCGCUGUCGGCGGCGGGAGACG	chr6:1312835-1313087(+)$1	252	186	216	11.0253
GCCGGCCGGCUGCGAAGACGCGGUGGGCCG	chrX:108976342-108976592(-)$1	250	187	217	9.8535
UCCGUAGGGUUCUUUCUCGAGGACUCUACC	chr20:54978707-54978946(+)$1	239	85	115	11.4560
GUGGAGUCCGUGAUGGGCAUCAAAAACUUC	chr18:3457454-3457707(+)$1	253	31	61	12.5675
GCCUGGGUGUCCUCUUUUGCCCGCGCCCCG	chr20:44518934-44519150(-)$1	216	85	115	11.2584
CGCGUUGCUGGAGCGGGAGCUGCAGCGGCG	chr16:22337050-22337308(+)$1	258	98	128	10.0682
CCUCUUCUAGUAGCUGUUGUCUGGUGGGGA	chr17:79525742-79526002(-)$1	260	199	229	10.2884
GAGCCGCUGGGGCGAGGACGGCGCGAGGCU	chr12:76425043-76425325(-)$1	282	121	151	9.8495
CAGCUUCAACGGGCACCCGCCCCAGGGCUG	chr16:22337353-22337596(+)$1	243	8	38	11.1397
UCAGCGACGUGAGGUGUCCCUUCUCGUUGA	chr20:61919382-61919645(+)$1	263	223	253	12.1095
ACUGAGUGCCAAGGGUCCCCUGAGCAUGCU	chr2:20647918-20648160(+)$1	242	125	155	11.1875
CCCGCUCCGAGAGCGGCAGCUUCGCGCGCG	chr12:89745848-89746133(-)$1	285	216	246	11.5473
UUAUGUGGUGAUGGUGUGGCUUUCCGAAAU	chr2:128620812-128621174(-)$1	362	13	43	9.4369
GCCUCCAGCAUAGCUUUAGCUUUGCUGGGU	chr14:69256491-69256753(-)$1	262	76	106	12.0005
GGCCCAGGAGCAGGGCAACCUGCUCAACUA	chr6:43473425-43473666(+)$1	241	137	167	10.2921
agccgcagcaccaggcggcugcagcugcgg	chr1:109235019-109235292(+)$1	273	231	261	13.7781
GCUGGCUUCGGAGCCUUAGGCGCCGCGGCC	chr2:61404599-61404826(+)$1	227	13	43	9.5793
CUGACCAGCUGCUCCGAGGACCCAGGAAAG	chr21:40194845-40195103(+)$1	258	26	56	10.6547
AUGAAUCUCCUGGACCCCUUCAUGAAGAUG	chr17:70117350-70117570(+)$1	220	182	212	10.0622
AAUUGUAUAUAUAUCUCCAUAUAUAUAUAU	chr1:234742767-234743037(-)$1	270	206	236	13.4179
UCCGAAAUAAUCCUACCAAGGAAGACUUGG	chr17:44249195-44249464(-)$1	269	142	172	10.9323
GUGCUGGGCUGGGACUACUUCACAGAGCAG	chr7:150934455-150934695(+)$1	240	106	136	12.6055
GCUGGAGGCUCUGGGGCGAUGGCUUCCGCA	chr6:32939469-32939688(+)$1	219	132	162	8.7590
GCUACUGCAACGAAUGCUUUCAGUUCAAGC	chr6:138202284-138202563(+)$1	279	128	158	11.9341
UUAAGGGGCUCAGGUGAACCAUGAUGAUGA	chr14:34419329-34419591(-)$1	262	177	207	11.4277
UCUUGGUGAGAAAAGAAAUUAUAGCACGAA	chr8:126011095-126011347(+)$1	252	153	183	11.8958
UGCUGCUCCCUGGGGCAGCCCUCACAGCAG	chr3:196674923-196675180(-)$1	257	191	221	12.0945
CAGCCGGGGCUGGCAUUGGCCGCCCGGCGC	chr10:88854235-88854481(-)$1	246	78	108	11.3004
GGGGGCAAGCCUGUAUAGACAGCACUUGGC	chr1:27238088-27238296(-)$1	208	52	82	10.5182
GCUUGCAGCCAGGUCAGGCCCAGCUGCAGC	chr19:10225415-10225666(+)$1	251	103	133	9.6450
CUCUGCCGGCGGCCUGUUGGGAGCUGGAUC	chr14:31676599-31676816(-)$1	217	164	194	10.2858
CCCGCGGUGCAGACACCCGUCCCAGGCGCC	chr5:6714863-6715111(+)$1	248	5	35	12.5157
CUCCCUCUGCCUAGGCCCCUGGUACUCAGU	chr16:70406384-70406695(+)$1	311	244	274	11.7154
GGUGGUGGGCGUCUGAGAAGUCGCCACCAU	chr9:38620177-38620474(-)$1	297	164	194	10.7861
AACGGGAGGAGGAAGCGAUUCUGGGGUUUC	chr12:498164-498424(-)$1	260	4	34	12.2811
UGAAAACGAGUGAUUGCUGUUGCCCUGUUU	chr22:21304115-21304404(+)$1	289	5	35	9.9950
GGUGGAGCUGUUCCUGAAGGAGUACCUCCA	chr6:11190648-11190879(-)$1	231	139	169	11.1994
CUGGCCCCUCUGCCCCAGGUGCAGGCCGUC	chr17:77081884-77082155(+)$1	271	151	181	11.7034
CGCUUUCUGGCCUCCUGUGGGGACCGGGCG	chr7:72984825-72985136(-)$1	311	111	141	10.8867
ACCUUUCGCUCUCCUUCUGGACUGGGAGAA	chr19:13264766-13265008(+)$1	242	192	222	11.6981
UUCUGUUUUAUUUUUGAGGAAAUAAAAUAA	chr22:37425605-37425878(+)$1	273	209	239	11.3335
GGGCUCCAAGACUUGGGUAAGCUCUGGGCC	chr14:65405921-65406158(-)$1	237	145	175	11.0255
GAGGCUGCCUCCCAACAGUGGGGAAGAGUG	chr6:37141776-37142066(+)$1	290	249	279	10.6046
AGAAUUUUAAAGGCAGUUGUUGACUAAACU	chr10:79800268-79800495(+)$1	227	55	85	13.1239

#DB
.(((((.(((((((....))))))).))))	chr9:84303808-84304044(-)$1	1	100	130	11.8122
((((.(((.(..((....))..).)))..)	chr7:105517513-105517797(+)$1	1	112	142	11.4949
(((.((((((.(((....))))))))).))	chr17:76202997-76203284(+)$1	1	60	90	11.8533
((((((.(...(((....)))...).))))	chr12:109994524-109994803(-)$1	1	135	165	13.8970
...((.((((.(((....)))))))..)).	chr19:15348942-15349225(-)$1	1	30	60	10.5318
.(((((((...(((....)))))))))).)	chr16:70433037-70433278(-)$1	1	186	216	13.5813
.)(.((((((((((....))).))))))).	chr17:18167813-18168049(+)$1	1	76	106	12.7979
(..((((((..(((....))).))).))).	chr7:72985047-72985322(-)$1	1	23	53	13.4393
.((..(((((((......)))))))....)	chr1:11982340-11982626(-)$1	1	68	98	8.8489
((((.((((..(((....)))...)))).)	chr10:79800295-79800541(+)$1	1	28	58	13.1239
((.(((((((((((....))).))))....	chr11:70053042-70053301(+)$1	1	112	142	10.8892
....((((((((((....))))))))))..	chr15:70389951-70390213(-)$1	1	55	85	9.7886
(..((((((..(((....)))...))))))	chr18:56063313-56063645(+)$1	1	243	273	13.4273
(.((((((((((((....)))))...))))	chr20:43058851-43059089(+)$1	1	129	159	11.3412
(((....(((((((....)))))))...))	chr19:33791914-33792151(-)$1	1	65	95	11.8958
))))((((((((((....))))))).))).	chr6:1312835-1313087(+)$1	1	186	216	11.0253
))(((((.((((((....)))))).)))))	chrX:108976342-108976592(-)$1	1	187	217	9.8535
...(((((((((((....))))))))))).	chr20:54978707-54978946(+)$1	1	85	115	11.4560
(((((((...((((....))))...)))))	chr18:3457454-3457707(+)$1	1	31	61	12.5675
(.(.((((((...(....)...)))))).)	chr20:44518934-44519150(-)$1	1	85	115	11.2584
..((((((((.(((....))).))))))))	chr16:22337050-22337308(+)$1	1	98	128	10.0682
((((..((((..((....)))))).)))))	chr17:79525742-79526002(-)$1	1	199	229	10.2884
.((((..((.(.((....)).).)).))))	chr12:76425043-76425325(-)$1	1	121	151	9.8495
((((((....((((....))))..))))))	chr16:22337353-22337596(+)$1	1	8	38	11.1397
(((((((...((((....)))).)))))))	chr20:61919382-61919645(+)$1	1	223	253	12.1095
...)))(((..(((....)))..))).(((	chr2:20647918-20648160(+)$1	1	125	155	11.1875
)((((.((((.(((....)))))).).)))	chr12:89745848-89746133(-)$1	1	216	246	11.5473
((((.(.(.((.(((...))).))).).))	chr2:128620812-128621174(-)$1	1	13	43	9.4369
)))))(((((.(((....))).)))))(((	chr14:69256491-69256753(-)$1	1	76	106	12.0005
((((((((((((((....)))))))..)).	chr6:43473425-43473666(+)$1	1	137	167	10.2921
(((((((((..(((....)))..)))))))	chr1:109235019-109235292(+)$1	1	231	261	13.7781
...((((.(((.(((...))).))).))))	chr2:61404599-61404826(+)$1	1	13	43	9.5793
(((.((..(((.((....))..)))....)	chr21:40194845-40195103(+)$1	1	26	56	10.6547
....(((((.((((....)))).).)))).	chr17:70117350-70117570(+)$1	1	182	212	10.0622
...(((((((((((....))))))))))).	chr1:234742767-234743037(-)$1	1	206	236	13.4179
(((.((.(..((((....))))..).)).)	chr17:44249195-44249464(-)$1	1	142	172	10.9323
((((((..((((((....))).)))..)))	chr7:150934455-150934695(+)$1	1	106	136	12.6055
((.(((((((.(......).))))))))))	chr6:32939469-32939688(+)$1	1	132	162	8.7590
(((..((.((((((....))).))))))))	chr6:138202284-138202563(+)$1	1	128	158	11.9341
..((((..((((((....)).))).)....	chr14:34419329-34419591(-)$1	1	177	207	11.4277
((((.(((..(.((....)).)..))).))	chr8:126011095-126011347(+)$1	1	153	183	11.8958
.((((((....(((....)))....)))))	chr3:196674923-196675180(-)$1	1	191	221	12.0945
(.((((((.(.(((....))))))))))..	chr10:88854235-88854481(-)$1	1	78	108	11.3004
((((.((((.((((....))))..)))).)	chr1:27238088-27238296(-)$1	1	52	82	10.5182
(((.(((((..(((...)))..))))))))	chr19:10225415-10225666(+)$1	1	103	133	9.6450
((((((((((..((....))..)))))..)	chr14:31676599-31676816(-)$1	1	164	194	10.2858
((((.(((((.(((....)))....)))))	chr5:6714863-6715111(+)$1	1	5	35	12.5157
((....(((.((((....))))....))).	chr16:70406384-70406695(+)$1	1	244	274	11.7154
.(((((((.((.((....)).)))))))))	chr9:38620177-38620474(-)$1	1	164	194	10.7861
((((((((..((((....))))....))))	chr12:498164-498424(-)$1	1	4	34	12.2811
...(((((.(((((....)))))..)))))	chr22:21304115-21304404(+)$1	1	5	35	9.9950
(((((((.((((((....)))))).)))))	chr6:11190648-11190879(-)$1	1	139	169	11.1994
.(((((....((((....).)))))))).)	chr17:77081884-77082155(+)$1	1	151	181	11.7034
(((..(((((((((....)))).)))))..	chr7:72984825-72985136(-)$1	1	111	141	10.8867
.((((((.((((((....)))..))).)))	chr19:13264766-13265008(+)$1	1	192	222	11.6981
)).(((((((((((....))))))))))).	chr22:37425605-37425878(+)$1	1	209	239	11.3335
((((.(((.(((((....))).))))))))	chr14:65405921-65406158(-)$1	1	145	175	11.0255
((((((...(((((....)))))...))).	chr6:37141776-37142066(+)$1	1	249	279	10.6046
((((.((((..(((....)))...)))).)	chr10:79800268-79800495(+)$1	1	55	85	13.1239

#PSSM
f : 0.18	c : 0.11	e : 0.11	[ : 0.06	" : 0.06	d : 0.06	i : 0.05	g : 0.05	# : 0.05	h : 0.03	! : 0.03	: : 0.03	2 : 0.01	a : 0.01	+ : 0.01	' : 0.01	o : 0.01	b : 0.01	= : 0.01	
f : 0.20	e : 0.15	g : 0.10	c : 0.08	d : 0.08	" : 0.05	! : 0.05	[ : 0.05	# : 0.05	h : 0.03	i : 0.03	a : 0.01	b : 0.01	+ : 0.01	' : 0.01	o : 0.01	= : 0.01	
f : 0.22	e : 0.15	g : 0.10	c : 0.08	d : 0.08	# : 0.06	" : 0.03	a : 0.03	! : 0.03	[ : 0.03	h : 0.03	b : 0.01	+ : 0.01	' : 0.01	o : 0.01	i : 0.01	= : 0.01	: : 0.01	
f : 0.22	e : 0.15	g : 0.11	[ : 0.10	d : 0.10	c : 0.06	= : 0.06	! : 0.05	# : 0.05	b : 0.01	+ : 0.01	h : 0.01	i : 0.01	
f : 0.16	[ : 0.13	g : 0.13	e : 0.11	d : 0.10	= : 0.08	c : 0.06	! : 0.06	b : 0.05	# : 0.03	h : 0.01	i : 0.01	
e : 0.15	f : 0.15	g : 0.15	c : 0.11	d : 0.11	= : 0.08	b : 0.06	[ : 0.03	# : 0.03	! : 0.03	h : 0.01	a : 0.01	i : 0.01	
g : 0.15	d : 0.13	c : 0.11	e : 0.11	f : 0.10	= : 0.08	[ : 0.06	! : 0.06	# : 0.05	b : 0.03	h : 0.01	a : 0.01	i : 0.01	" : 0.01	
g : 0.18	c : 0.11	d : 0.11	e : 0.10	[ : 0.08	f : 0.06	= : 0.06	a : 0.05	" : 0.05	# : 0.05	! : 0.05	h : 0.01	b : 0.01	i : 0.01	
c : 0.15	g : 0.13	[ : 0.10	d : 0.10	f : 0.08	" : 0.08	e : 0.08	= : 0.06	# : 0.05	! : 0.05	a : 0.03	h : 0.01	b : 0.01	i : 0.01	
! : 0.16	g : 0.11	e : 0.11	c : 0.11	f : 0.06	" : 0.06	= : 0.06	[ : 0.06	d : 0.05	# : 0.05	b : 0.05	a : 0.03	h : 0.01	
! : 0.16	d : 0.16	[ : 0.13	c : 0.11	g : 0.10	= : 0.06	" : 0.05	e : 0.05	b : 0.05	f : 0.03	a : 0.03	# : 0.01	
c : 0.42	d : 0.15	[ : 0.10	g : 0.08	= : 0.06	! : 0.05	e : 0.05	f : 0.03	" : 0.01	a : 0.01	
c : 0.44	d : 0.15	b : 0.13	g : 0.06	= : 0.06	e : 0.05	o : 0.03	f : 0.03	" : 0.01	
c : 0.42	d : 0.15	b : 0.13	g : 0.06	= : 0.06	e : 0.05	o : 0.03	f : 0.03	a : 0.03	
m : 0.91	o : 0.03	c : 0.03	l : 0.01	
m : 0.91	l : 0.05	o : 0.03	
m : 0.91	l : 0.05	o : 0.03	
m : 0.91	o : 0.03	l : 0.03	c : 0.01	
c : 0.42	d : 0.15	b : 0.13	g : 0.08	= : 0.06	e : 0.05	a : 0.05	f : 0.03	
c : 0.42	d : 0.15	b : 0.13	g : 0.08	= : 0.06	e : 0.05	f : 0.03	] : 0.03	3 : 0.01	
c : 0.42	d : 0.16	g : 0.10	2 : 0.06	= : 0.06	] : 0.06	e : 0.05	f : 0.03	3 : 0.01	
d : 0.18	] : 0.16	g : 0.11	2 : 0.11	3 : 0.08	= : 0.06	f : 0.05	e : 0.05	a : 0.05	c : 0.05	4 : 0.03	b : 0.01	
g : 0.13	c : 0.13	2 : 0.11	e : 0.10	f : 0.08	3 : 0.08	= : 0.06	] : 0.06	4 : 0.06	d : 0.05	b : 0.05	a : 0.01	h : 0.01	
g : 0.16	c : 0.15	3 : 0.11	f : 0.08	2 : 0.08	e : 0.08	= : 0.06	4 : 0.06	d : 0.05	b : 0.05	] : 0.01	h : 0.01	i : 0.01	a : 0.01	
g : 0.16	c : 0.16	] : 0.10	f : 0.08	d : 0.08	e : 0.08	= : 0.06	4 : 0.06	a : 0.05	3 : 0.05	h : 0.01	b : 0.01	i : 0.01	2 : 0.01	
e : 0.15	] : 0.13	f : 0.10	g : 0.10	c : 0.08	d : 0.08	= : 0.08	4 : 0.06	2 : 0.05	3 : 0.05	a : 0.03	h : 0.01	i : 0.01	b : 0.01	
e : 0.16	g : 0.13	c : 0.11	f : 0.11	d : 0.10	= : 0.08	4 : 0.06	2 : 0.05	] : 0.03	b : 0.03	3 : 0.01	h : 0.01	: : 0.01	a : 0.01	i : 0.01	
f : 0.15	d : 0.15	e : 0.11	g : 0.11	c : 0.11	= : 0.08	4 : 0.06	] : 0.05	b : 0.05	2 : 0.03	3 : 0.01	h : 0.01	i : 0.01	
c : 0.15	f : 0.15	] : 0.11	g : 0.10	d : 0.10	e : 0.08	4 : 0.08	= : 0.06	2 : 0.03	b : 0.03	6 : 0.01	h : 0.01	i : 0.01	9 : 0.01	
f : 0.20	e : 0.11	4 : 0.11	c : 0.10	g : 0.08	d : 0.08	b : 0.06	] : 0.03	: : 0.03	2 : 0.01	6 : 0.01	> : 0.01	a : 0.01	h : 0.01	i : 0.01	5 : 0.01	9 : 0.01	= : 0.01	

#score	670.5645450381775
#seq	59
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF322GPD_SF3B1_CDS_m1_run1.txt

#BEAR
>>>>>>>>>>>>dddd333bb]gggggggccc[ddddlll	chr6:43746055-43746300(+)$1	245	195	235	39.1459
h>>>>>>>>>>>dddd]aggggggg22dddd]bb]ccc]a	chr16:2820166-2820468(+)$1	302	249	289	38.3952

#otherMatches

#Seq PSSM
CAGCACAACAAAUGUGAAUGCAGGUGAGGAUGUAGUCACG	chr6:43746055-43746300(+)$1	245	195	235	39.1459
UGUGGAGCGUCGCCGUCCCUCGCCCCAGCCCUCACCACGG	chr16:2820166-2820468(+)$1	302	249	289	38.3952

#DB
............))))...)).)))))))(((.((((...	chr6:43746055-43746300(+)$1	1	195	235	39.1459
)...........)))).))))))))..)))).)).))).)	chr16:2820166-2820468(+)$1	1	249	289	38.3952

#PSSM
> : 0.50	h : 0.50	
> : 1.00	
> : 1.00	
> : 1.00	
> : 1.00	
> : 1.00	
> : 1.00	
> : 1.00	
> : 1.00	
> : 1.00	
> : 1.00	
> : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
3 : 0.50	] : 0.50	
3 : 0.50	a : 0.50	
3 : 0.50	g : 0.50	
b : 0.50	g : 0.50	
b : 0.50	g : 0.50	
] : 0.50	g : 0.50	
g : 1.00	
g : 1.00	
g : 1.00	
g : 0.50	2 : 0.50	
g : 0.50	2 : 0.50	
g : 0.50	d : 0.50	
g : 0.50	d : 0.50	
c : 0.50	d : 0.50	
c : 0.50	d : 0.50	
c : 0.50	] : 0.50	
[ : 0.50	b : 0.50	
d : 0.50	b : 0.50	
d : 0.50	] : 0.50	
d : 0.50	c : 0.50	
d : 0.50	c : 0.50	
l : 0.50	c : 0.50	
l : 0.50	] : 0.50	
l : 0.50	a : 0.50	

#score	77.54117672559997
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_CDS_m2_run2.txt

#BEAR
ff[a[eeeeemmmmeeeee]afff	chr17:79180507-79180823(-)$1	316	137	161	13.3137
hhhhheeeeemmmmeeeee22hhh	chrX:118708676-118709000(+)$1	324	253	277	10.7201
cccc[eeeeemmmmeeeee]ccc2	chr14:24032936-24033268(-)$1	332	151	175	12.7025
ca[gggggggmmmmggggggg]a]	chr1:6500527-6500847(+)$1	320	95	119	9.5038
ccc!!eeeeeooooooeeeee333	chr2:131976217-131976486(+)$1	269	197	221	11.1108
gggggeeeeemmmmeeeeecccbb	chr20:34302143-34302411(-)$1	268	177	201	11.9000
d####eeeeemmmmeeeee333dd	chr8:145107039-145107286(-)$1	247	144	168	13.6832
c[a!!eeeeemmmmeeeee22a]c	chr15:75651594-75651848(-)$1	254	141	165	13.4858
bb[gggggggmmmmggggggg]bb	chr22:20073374-20073640(+)$1	266	15	39	8.9999
fccc[eeeeeooooooeeeee]cc	chr16:2867610-2867909(+)$1	299	83	107	10.6406
eeea[eeeeemmmmeeeee]a]ee	chr1:46034446-46034709(+)$1	263	64	88	12.6962
bb"""eeeeemmmmeeeee333bb	chr10:27040587-27040940(-)$1	353	264	288	13.6390
!a####ddddmmmmdddda22fff	chr3:9984900-9985200(+)$1	300	214	238	9.5584
ffff[eeeeemmmmeeeee22fff	chr7:100173206-100173449(-)$1	243	197	221	12.7830
fffffeeeeemmmmeeeeebbooo	chr1:110603469-110603742(+)$1	273	109	133	10.3348
dd"""eeeeellleeeee22dddd	chrX:152936766-152937010(-)$1	244	136	160	10.1304
f[a!!eeeeemmmmeeeee]a]ff	chr5:102521895-102522178(+)$1	283	143	167	13.8576
$$$$$eeeeemmmmeeeee333ee	chr16:725958-726252(+)$1	294	6	30	12.7369
bb"""eeeeennnnneeeee333b	chr6:99852201-99852463(-)$1	262	22	46	10.8630
fffffeeeeellleeeee]fffff	chr7:100172605-100172911(-)$1	306	61	85	9.9779
ffffffddddmmmmdddd]fffff	chr1:52825790-52826170(-)$1	380	229	253	8.5464
cccc[eeeeemmmmeeeee]ccc]	chr15:75650793-75651048(-)$1	255	186	210	12.9184
bbb[eeeeeooooooeeeee]bb3	chr19:46180838-46181082(+)$1	244	54	78	9.2433
fff!!eeeeennnnneeeee]fff	chr10:70525593-70525890(+)$1	297	145	169	10.3413
b"""ffffffmmmmffffff333b	chr7:158545420-158545731(-)$1	311	97	121	9.8635
==========mmmm==========	chr17:48823211-48823467(+)$1	256	218	242	9.2042
d!!a[eeeeemmmmeeeee]a666	chr22:20073499-20073728(+)$1	229	170	194	12.2416
fff[ffffffmmmmffffffffff	chr8:144917598-144917881(-)$1	283	192	216	8.8304
eee[a[eeeeellleeeee]a333	chr11:431634-431926(-)$1	292	214	238	10.8027
gggggg[cccmmmmccc]gggggg	chr19:42401298-42401566(+)$1	268	198	222	8.2677
qqccceeeeemmmmeeeeehhhhh	chr6:33382575-33382956(+)$1	381	21	45	9.7601
dd[a[eeeeennnnneeeeea]dd	chr1:1284343-1284642(-)$1	299	120	144	10.1058
::ccceeeeemmmmeeeee22ccc	chrX:64754372-64754676(-)$1	304	189	213	10.7959
ccc!!eeeeennnnneeeee22cc	chr19:617758-618088(-)$1	330	69	93	10.6674
ddd!!eeeeemmmmeeeee]dddd	chr5:65364549-65364824(+)$1	275	193	217	12.1261
DDccceeeeemmmmeeeee333cc	chr8:145113433-145113703(-)$1	270	2	26	11.3277
fffffeeeeellleeeee]fffff	chr7:100172711-100172983(-)$1	272	133	157	9.9779
"""gggggggmmmmggggggg]bb	chr19:46173775-46174038(+)$1	263	177	201	9.2672
dd"""eeeeeooooooeeeee]dd	chr17:27443367-27443615(-)$1	248	210	234	10.6145
$$$$$eeeeemmmmeeeee333cc	chr12:132401780-132402075(+)$1	295	4	28	13.0561
!!a[ffffffmmmmffffffa22a	chr16:28847498-28847748(+)$1	250	9	33	9.0913
bb!!a[eeeeellleeeee]a]bb	chr5:154173602-154173863(+)$1	261	165	189	10.8978
ggg"""ddddmmmmddddgggggg	chr17:38317995-38318262(+)$1	267	216	240	9.3315
b[ccc[ddddmmmmdddd]ccc]b	chr9:139565233-139565512(+)$1	279	156	180	8.5497
ffffffffffmmmmffffff]fff	chr17:80016436-80016716(-)$1	280	105	129	8.6304
ggg[eeeeeammmma]eeeee888	chr1:1019485-1019788(-)$1	303	171	195	10.1035
f[bb[eeeeemmmmeeeee]bb]f	chr1:33820683-33821036(+)$1	353	64	88	11.9545
cc!!ffffffmmmmffffff22cc	chr14:105935239-105935525(+)$1	286	20	44	9.6320
d####eeeeellleeeee22dddd	chr7:100174624-100174850(-)$1	226	137	161	10.1825
ffffffddddmmmmdddd]fffff	chr11:64121401-64121690(+)$1	289	57	81	8.5464
fff[ffffffmmmmffffffffff	chr8:144917434-144917736(-)$1	302	47	71	8.8304
cddddeeeeeooooooeeeee]dd	chr2:74757072-74757353(+)$1	281	245	269	9.1243

#otherMatches

#Seq PSSM
UGAGCUGUCUGACAGGAUGACCAG	chr17:79180507-79180823(-)$1	316	137	161	13.3137
CGCGGUCAUUUUCGGGUGAGUCUG	chrX:118708676-118709000(+)$1	324	253	277	10.7201
AUGGACCAGGAUGACCUGGGCUAC	chr14:24032936-24033268(-)$1	332	151	175	12.7025
gggcgggCCUACAGGGGCCUGGCG	chr1:6500527-6500847(+)$1	320	95	119	9.5038
CCUGGUGGGGUAAAGUCCCCAGAA	chr2:131976217-131976486(+)$1	269	197	221	11.1108
UGGUCAUGUUACUGAACGUACUGA	chr20:34302143-34302411(-)$1	268	177	201	11.9000
CACGGGCGCAGCGGUGUGCACAGC	chr8:145107039-145107286(-)$1	247	144	168	13.6832
CCCCUGCUGCCCCAGCAGCCUGUG	chr15:75651594-75651848(-)$1	254	141	165	13.4858
GCCCGGGUCUCAGCGGACUUGUGC	chr22:20073374-20073640(+)$1	266	15	39	8.9999
UGGGUGGGCAAAAACGUGCUUUCC	chr16:2867610-2867909(+)$1	299	83	107	10.6406
CCAGGAGCUUAGGGAAGCUGCAUG	chr1:46034446-46034709(+)$1	263	64	88	12.6962
CAGAUGACAUUCCCAUGUUUGAUG	chr10:27040587-27040940(-)$1	353	264	288	13.6390
GAAAACACCGAGGGCGGUUAUCGC	chr3:9984900-9985200(+)$1	300	214	238	9.5584
UUUGCAGCGGAUGUCUGCUCUCAG	chr7:100173206-100173449(-)$1	243	197	221	12.7830
AUGGGGAGGGGAUGCCCUCUGGAG	chr1:110603469-110603742(+)$1	273	109	133	10.3348
ACUGAGCGGCAUGGCUGCGUGUGU	chrX:152936766-152937010(-)$1	244	136	160	10.1304
UGUUUAGCACCUCGGUGCUCGGGG	chr5:102521895-102522178(+)$1	283	143	167	13.8576
GUGUGUCUGGGACCCCAGGAGAGG	chr16:725958-726252(+)$1	294	6	30	12.7369
UAUUUUGGUUCUGAUGACUAUUUU	chr6:99852201-99852463(-)$1	262	22	46	10.8630
GGUGGGGGGCAAGGCCCUACCGCC	chr7:100172605-100172911(-)$1	306	61	85	9.9779
GGCUGGCUGGGUUUCUGGACCAGU	chr1:52825790-52826170(-)$1	380	229	253	8.5464
CGGCUUAGCCAGGAGGUUGUGCUG	chr15:75650793-75651048(-)$1	255	186	210	12.9184
CUAGCGAGCAAAUGAGCUUGGUGA	chr19:46180838-46181082(+)$1	244	54	78	9.2433
AUUGGGCUGCAAAAAGUGGCAAGU	chr10:70525593-70525890(+)$1	297	145	169	10.3413
GUUUGUUUAUUCCCAUAAAUUUUC	chr7:158545420-158545731(-)$1	311	97	121	9.8635
AGUAUUAUUCCUUGGAAUGGUACU	chr17:48823211-48823467(+)$1	256	218	242	9.2042
CCUGCUGAGGACCCCUUCAACUUC	chr22:20073499-20073728(+)$1	229	170	194	12.2416
GAGAGUGGGGCUGACCCUGCCUUG	chr8:144917598-144917881(-)$1	283	192	216	8.8304
AGCCAGUUGAUGAAAUCAGGUAAC	chr11:431634-431926(-)$1	292	214	238	10.8027
GGGGGAAGGGCUAGCCCCUCCCCC	chr19:42401298-42401566(+)$1	268	198	222	8.2677
CACUCACCAGGUCACUGGUCCAGG	chr6:33382575-33382956(+)$1	381	21	45	9.7601
cgggcgggcgggUAgcgccccgcg	chr1:1284343-1284642(-)$1	299	120	144	10.1058
UCGGCCCACGGCAUCGUGGUCGCC	chrX:64754372-64754676(-)$1	304	189	213	10.7959
CCUAACCCAGGAUGUUUGGGGAGG	chr19:617758-618088(-)$1	330	69	93	10.6674
UGUAAGCAGUUUUCACUGUGGCAG	chr5:65364549-65364824(+)$1	275	193	217	12.1261
GCUGUGGUGCUCAUGCACUCGUAC	chr8:145113433-145113703(-)$1	270	2	26	11.3277
GGUGGGGGGCAAGGCCCUACCGCC	chr7:100172711-100172983(-)$1	272	133	157	9.9779
GAGUGCCAGGAGACCUUGGCAGCC	chr19:46173775-46174038(+)$1	263	177	201	9.2672
CUGAGGCACAUAUGUCUGUGCGGG	chr17:27443367-27443615(-)$1	248	210	234	10.6145
ggguucggcucggaggcuguggga	chr12:132401780-132402075(+)$1	295	4	28	13.0561
AUUAGCUGGGGGAAUUUGGCAUGG	chr16:28847498-28847748(+)$1	250	9	33	9.0913
CCGAGCUUUACAGUGUGGAUCAGG	chr5:154173602-154173863(+)$1	261	165	189	10.8978
CUUGAGGCUUGGAAGAGUAAGGAU	chr17:38317995-38318262(+)$1	267	216	240	9.3315
CUCUGCCCGCAGGAGUGGACAGUG	chr9:139565233-139565512(+)$1	279	156	180	8.5497
GUGGGCAGGGUGGUCUCUGCACUG	chr17:80016436-80016716(-)$1	280	105	129	8.6304
GCCCGGGUCCCCAGGAGACCCACC	chr1:1019485-1019788(-)$1	303	171	195	10.1035
cggcugcugcuguuguggcugugg	chr1:33820683-33821036(+)$1	353	64	88	11.9545
GGAAGUCAGAGGCCUCUGGCACCC	chr14:105935239-105935525(+)$1	286	20	44	9.6320
CACAAGUAGGUUUCCUGCCAGCAU	chr7:100174624-100174850(-)$1	226	137	161	10.1825
UGCCCUCUUGCCCCCAGGAAGGGC	chr11:64121401-64121690(+)$1	289	57	81	8.5464
GAGAGUGGGGCUGACCCUGCCUUG	chr8:144917434-144917736(-)$1	302	47	71	8.8304
CUGUUGGGGUCACUGAACCCCGAG	chr2:74757072-74757353(+)$1	281	245	269	9.1243

#DB
((.(.(((((....))))).))))	chr17:79180507-79180823(-)$1	1	137	161	13.3137
((((((((((....)))))..)))	chrX:118708676-118709000(+)$1	1	253	277	10.7201
((((.(((((....))))).))).	chr14:24032936-24033268(-)$1	1	151	175	12.7025
((.(((((((....))))))).).	chr1:6500527-6500847(+)$1	1	95	119	9.5038
(((..(((((......)))))...	chr2:131976217-131976486(+)$1	1	197	221	11.1108
)))))(((((....)))))(((((	chr20:34302143-34302411(-)$1	1	177	201	11.9000
(....(((((....)))))...))	chr8:145107039-145107286(-)$1	1	144	168	13.6832
(.(..(((((....)))))..).)	chr15:75651594-75651848(-)$1	1	141	165	13.4858
((.(((((((....))))))).))	chr22:20073374-20073640(+)$1	1	15	39	8.9999
((((.(((((......))))).))	chr16:2867610-2867909(+)$1	1	83	107	10.6406
((((.(((((....))))).).))	chr1:46034446-46034709(+)$1	1	64	88	12.6962
((...(((((....)))))...))	chr10:27040587-27040940(-)$1	1	264	288	13.6390
.(....((((....)))))..)))	chr3:9984900-9985200(+)$1	1	214	238	9.5584
((((.(((((....)))))..)))	chr7:100173206-100173449(-)$1	1	197	221	12.7830
)))))(((((....)))))((...	chr1:110603469-110603742(+)$1	1	109	133	10.3348
((...(((((...)))))..))))	chrX:152936766-152937010(-)$1	1	136	160	10.1304
(.(..(((((....))))).).))	chr5:102521895-102522178(+)$1	1	143	167	13.8576
.....(((((....)))))...))	chr16:725958-726252(+)$1	1	6	30	12.7369
((...(((((.....)))))...)	chr6:99852201-99852463(-)$1	1	22	46	10.8630
((((((((((...))))).)))))	chr7:100172605-100172911(-)$1	1	61	85	9.9779
((((((((((....)))).)))))	chr1:52825790-52826170(-)$1	1	229	253	8.5464
((((.(((((....))))).))).	chr15:75650793-75651048(-)$1	1	186	210	12.9184
(((.(((((......))))).)).	chr19:46180838-46181082(+)$1	1	54	78	9.2433
(((..(((((.....))))).)))	chr10:70525593-70525890(+)$1	1	145	169	10.3413
(...((((((....))))))...)	chr7:158545420-158545731(-)$1	1	97	121	9.8635
((((((((((....))))))))))	chr17:48823211-48823467(+)$1	1	218	242	9.2042
(..(.(((((....))))).)...	chr22:20073499-20073728(+)$1	1	170	194	12.2416
(((.((((((....))))))))))	chr8:144917598-144917881(-)$1	1	192	216	8.8304
(((.(.(((((...))))).)...	chr11:431634-431926(-)$1	1	214	238	10.8027
((((((.(((....))).))))))	chr19:42401298-42401566(+)$1	1	198	222	8.2677
..)))(((((....)))))(((((	chr6:33382575-33382956(+)$1	1	21	45	9.7601
((.(.(((((.....)))))).))	chr1:1284343-1284642(-)$1	1	120	144	10.1058
..((((((((....)))))..)))	chrX:64754372-64754676(-)$1	1	189	213	10.7959
(((..(((((.....)))))..))	chr19:617758-618088(-)$1	1	69	93	10.6674
(((..(((((....))))).))))	chr5:65364549-65364824(+)$1	1	193	217	12.1261
((((((((((....)))))...))	chr8:145113433-145113703(-)$1	1	2	26	11.3277
((((((((((...))))).)))))	chr7:100172711-100172983(-)$1	1	133	157	9.9779
...(((((((....))))))).))	chr19:46173775-46174038(+)$1	1	177	201	9.2672
((...(((((......))))).))	chr17:27443367-27443615(-)$1	1	210	234	10.6145
.....(((((....)))))...))	chr12:132401780-132402075(+)$1	1	4	28	13.0561
..(.((((((....)))))))..)	chr16:28847498-28847748(+)$1	1	9	33	9.0913
((..(.(((((...))))).).))	chr5:154173602-154173863(+)$1	1	165	189	10.8978
(((...((((....))))))))))	chr17:38317995-38318262(+)$1	1	216	240	9.3315
(.(((.((((....)))).))).)	chr9:139565233-139565512(+)$1	1	156	180	8.5497
((((((((((....)))))).)))	chr17:80016436-80016716(-)$1	1	105	129	8.6304
(((.((((((....).)))))...	chr1:1019485-1019788(-)$1	1	171	195	10.1035
(.((.(((((....))))).)).)	chr1:33820683-33821036(+)$1	1	64	88	11.9545
((..((((((....))))))..))	chr14:105935239-105935525(+)$1	1	20	44	9.6320
(....(((((...)))))..))))	chr7:100174624-100174850(-)$1	1	137	161	10.1825
((((((((((....)))).)))))	chr11:64121401-64121690(+)$1	1	57	81	8.5464
(((.((((((....))))))))))	chr8:144917434-144917736(-)$1	1	47	71	8.8304
)(((((((((......))))).))	chr2:74757072-74757353(+)$1	1	245	269	9.1243

#PSSM
f : 0.26	c : 0.15	d : 0.13	b : 0.13	g : 0.07	e : 0.03	! : 0.03	$ : 0.03	h : 0.01	= : 0.01	q : 0.01	: : 0.01	D : 0.01	" : 0.01	
f : 0.21	c : 0.11	b : 0.09	d : 0.09	g : 0.07	[ : 0.07	a : 0.03	# : 0.03	e : 0.03	$ : 0.03	" : 0.03	! : 0.03	h : 0.01	= : 0.01	q : 0.01	: : 0.01	D : 0.01	
f : 0.19	c : 0.17	" : 0.11	[ : 0.07	g : 0.07	# : 0.05	a : 0.05	! : 0.05	e : 0.03	$ : 0.03	b : 0.03	d : 0.03	h : 0.01	= : 0.01	
! : 0.15	c : 0.13	f : 0.13	" : 0.11	[ : 0.11	g : 0.09	a : 0.07	# : 0.05	$ : 0.03	h : 0.01	= : 0.01	b : 0.01	d : 0.01	
f : 0.21	[ : 0.17	! : 0.11	g : 0.09	" : 0.09	c : 0.07	# : 0.05	$ : 0.03	e : 0.03	a : 0.03	h : 0.01	= : 0.01	d : 0.01	
e : 0.65	f : 0.15	g : 0.07	[ : 0.05	# : 0.01	= : 0.01	" : 0.01	
e : 0.69	f : 0.11	d : 0.09	g : 0.05	= : 0.01	[ : 0.01	
e : 0.69	f : 0.11	d : 0.09	g : 0.05	= : 0.01	c : 0.01	
e : 0.69	f : 0.11	d : 0.09	g : 0.05	= : 0.01	c : 0.01	
e : 0.65	f : 0.11	d : 0.09	g : 0.05	o : 0.01	= : 0.01	c : 0.01	a : 0.01	
m : 0.71	o : 0.09	l : 0.07	n : 0.07	e : 0.03	
m : 0.71	l : 0.11	o : 0.09	n : 0.07	
m : 0.71	l : 0.11	o : 0.09	n : 0.07	
m : 0.71	o : 0.09	e : 0.07	n : 0.07	l : 0.03	
e : 0.49	f : 0.11	o : 0.09	d : 0.09	n : 0.07	g : 0.05	= : 0.01	c : 0.01	a : 0.01	
e : 0.59	f : 0.11	d : 0.09	o : 0.07	g : 0.05	= : 0.01	c : 0.01	] : 0.01	
e : 0.69	f : 0.11	d : 0.09	g : 0.05	= : 0.01	c : 0.01	
e : 0.69	f : 0.11	d : 0.09	g : 0.05	= : 0.01	] : 0.01	
e : 0.61	f : 0.11	g : 0.09	] : 0.09	2 : 0.03	a : 0.01	= : 0.01	
] : 0.19	e : 0.19	f : 0.19	2 : 0.13	g : 0.09	3 : 0.09	c : 0.03	b : 0.01	= : 0.01	h : 0.01	
a : 0.15	2 : 0.13	3 : 0.13	f : 0.11	g : 0.09	e : 0.09	c : 0.07	d : 0.05	] : 0.05	b : 0.03	= : 0.01	h : 0.01	
f : 0.21	] : 0.19	3 : 0.17	c : 0.09	d : 0.05	2 : 0.05	h : 0.03	b : 0.03	g : 0.03	a : 0.01	o : 0.01	= : 0.01	6 : 0.01	8 : 0.01	
f : 0.23	c : 0.15	d : 0.13	b : 0.11	3 : 0.07	] : 0.05	h : 0.03	e : 0.03	g : 0.03	a : 0.01	o : 0.01	= : 0.01	6 : 0.01	2 : 0.01	8 : 0.01	
f : 0.24	b : 0.15	d : 0.13	c : 0.13	3 : 0.05	h : 0.03	] : 0.03	e : 0.03	g : 0.03	2 : 0.01	o : 0.01	= : 0.01	6 : 0.01	a : 0.01	8 : 0.01	

#score	555.4722119926425
#seq	52
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_transcript_m3_run1.txt

#BEAR
eeeee[cccbbpppppppbb]ccceeeee	chr13:92002724-92002942(+)$1	218	161	190	15.1496
fffff[eeeeerrrrrrrrreeeee]fff	chr7:65447000-65447287(-)$1	287	178	207	12.4487
c:eeeee[cccpppppppccc]eeeee:f	chr1:1256066-1256371(-)$1	305	89	118	14.1944
ff[bbbb[cccpppppppccc]bb]bb]f	chr6:36164560-36164856(-)$1	296	230	259	14.5790
c[ccc!!ddddrrrrrrrrrdddd4444c	chr12:54069736-54069964(-)$1	228	59	88	13.4195
cc####eeeeerrrrrrrrreeeeeccc]	chr9:37485893-37486197(+)$1	304	232	261	13.2365
dd[bba[ddddpppppppdddd]a]bb]d	chr3:179040795-179041175(+)$1	380	297	326	16.1133
eeeee[eeeeepppppppeeeee]eeeee	chr3:179332658-179332880(+)$1	222	20	49	15.7976
ffddddeeeeepppppppeeeee]dddd9	chr1:155145165-155145476(-)$1	311	63	92	14.7238
gggg[ccc[bbpppppppbbccc]ggggg	chr3:160122228-160122483(+)$1	255	181	210	16.3146
dddd[bb[cccpppppppccc]bb]dddd	chr4:1994567-1994816(-)$1	249	124	153	14.8993
[a[bb!!ddddpppppppddddbb]a]gg	chr6:4777159-4777407(+)$1	248	149	178	16.1960
dddd[eeeeerrrrrrrrreeeee22ddd	chr9:100264432-100264711(+)$1	279	51	80	12.3411
ffff"""ddddpppppppdddd333ffff	chr2:97534065-97534312(-)$1	247	122	151	16.4096
dddd!!eeeeepppppppeeeee333ddd	chr11:6632903-6633153(-)$1	250	82	111	16.5145
ggggg!!ddddpppppppdddd22ggggg	chr19:30433084-30433390(+)$1	306	88	117	16.7599
cc[ccc!!cccpppppppccc4444ccc]	chr6:109702854-109703174(-)$1	320	243	272	16.9958
gggg"""ddddpppppppdddd333gggg	chr14:90864145-90864415(+)$1	270	37	66	17.2008
##bbgggggggpppppppggggggg]bbf	chr21:35445942-35446226(+)$1	284	70	99	15.2590
!!ccc!!cccrrrrrrrrrccc22ccc]b	chr17:47026746-47026980(-)$1	234	31	60	13.1194
&ccc[ffffffpppppppffffff]ccc2	chrX:151142893-151143144(-)$1	251	138	167	15.1609
"""eeeee[bbpppppppbbeeeee333f	chr22:20123470-20123727(+)$1	257	98	127	16.3740
ffffff[ddddpppppppdddd]ffffff	chr3:183353790-183354104(+)$1	314	273	302	15.6518
cccgggggggrrrrrrrrrggggggg]cc	chr16:2205976-2206243(+)$1	267	190	219	12.9579
""iiiiiiiiipppppppiiiiiiiiicc	chr4:41937135-41937396(+)$1	261	39	68	16.3649
ccc!!ffffffpppppppffffff22ccc	chr22:22006900-22007150(+)$1	250	153	182	15.5417
!ffffff!!bbpppppppbbffffff]ff	chr1:44440622-44440903(+)$1	281	31	60	15.2020
dd[ccc[ddddpppppppdddd22cccdd	chr12:112035288-112035554(-)$1	266	221	250	16.2033
[ccc[a[a[bbpppppppbb]a]a]ccc]	chr8:87354872-87355150(+)$1	278	67	96	16.9932
""dddd[ddddrrrrrrrrrdddd]dddd	chr12:123873662-123873943(+)$1	281	188	217	12.7025
%ggggggg!!apppppppa22ggggggg2	chr10:976793-977058(-)$1	265	25	54	15.2053
gggggffffffpppppppffffff]gggg	chr12:133066657-133066945(+)$1	288	46	75	15.6512
ddd[a[eeeeepppppppeeeee]a]ddd	chr8:1780061-1780353(+)$1	292	231	260	16.1078
c[dddd[a[bbpppppppbba]ddddccc	chr11:47600538-47600782(+)$1	244	187	216	15.5043
!a[bb[eeeeepppppppeeeee]bb]a2	chr15:70389875-70390123(-)$1	248	177	206	15.8346
ccc[dddd[bbpppppppbbddddcccHH	chr11:46403154-46403400(+)$1	246	94	123	14.4400
!dddd"""cccpppppppcccdddd22ee	chr16:16043361-16043650(+)$1	289	90	119	15.6024
###a[ffffffpppppppffffffa333f	chr12:125051792-125052101(-)$1	309	203	232	15.6767
ee"""a[ddddpppppppdddd]aeeeee	chr16:30076984-30077336(+)$1	352	179	208	16.2467
cccc[ffffffrrrrrrrrrffffff444	chr4:56502329-56502548(-)$1	219	171	200	12.1147
!dddd[ccc[apppppppa]ccc22dddd	chr7:56173956-56174163(-)$1	207	150	179	15.6274
d[bb[a!!cccpppppppccc22a]bb]d	chr2:201640205-201640441(+)$1	236	69	98	15.8991
!==========ppppppp==========2	chr19:10764975-10765254(+)$1	279	245	274	16.9446
cccccccddddpppppppdddd]ccc]cc	chr7:2394588-2394900(+)$1	312	178	207	16.3642
ccc[dddd[bbpppppppbb]ddddccc]	chr9:136132937-136133183(-)$1	246	88	117	15.6954
b[eeeee[cccpppppppccc]eeeeebb	chr7:50860872-50861110(-)$1	238	147	176	15.3880
dd[bb!!ddddrrrrrrrrrddddbbddd	chr19:36631903-36632180(+)$1	277	203	232	12.1438
eeeeeeee[bbpppppppbb]eeeee22e	chr18:9137326-9137603(+)$1	277	243	272	15.0945
ccbb[a[bb[apppppppa]bb]a]bb:B	chr5:649112-649375(+)$1	263	111	140	13.1439
J:ggggggg[apppppppa]gggggggdd	chr8:56792828-56793109(+)$1	281	134	163	13.8627
b[eeeee!!bbpppppppbb333eeeeeb	chr2:47403474-47403726(-)$1	252	51	80	15.2111
gggggg[ddddpppppppdddd]gggggg	chr20:55969418-55969698(+)$1	280	133	162	16.8494
bb!!dddd[bbpppppppbbdddd22bb:	chr2:122288496-122288702(+)$1	206	4	33	14.0170
ggggg[eeeeepppppppeeeeegggggg	chr22:50011584-50011866(-)$1	282	55	84	16.6392
bb!!bbeeeeepppppppeeeee]bbbb]	chr19:10406933-10407183(+)$1	250	166	195	14.7583

#otherMatches

#Seq PSSM
UGCAGGUAGUGAUAUGUGCAUCUACUGCA	chr13:92002724-92002942(+)$1	218	161	190	15.1496
UGGGGCUGCAGGGCGGGAUGCUGUACCCC	chr7:65447000-65447287(-)$1	287	178	207	12.4487
CAGCAGUGGUUGUGCUUGGAUGGCUGCAC	chr1:1256066-1256371(-)$1	305	89	118	14.1944
UCCGCCGUGCCCCCUcccggcccgcgcug	chr6:36164560-36164856(-)$1	296	230	259	14.5790
AUGCGCUGAGCCUUCCUUUCGCUCUUCCC	chr12:54069736-54069964(-)$1	228	59	88	13.4195
GACUGCGGAGCUGGAGCAGUGCUCCUCUA	chr9:37485893-37486197(+)$1	304	232	261	13.2365
AGGAGCGGGUGGGUCGGGCGCUGGACUGC	chr3:179040795-179041175(+)$1	380	297	326	16.1133
UUAUAAUCUGAUUUUAACUCAGAAUAUAA	chr3:179332658-179332880(+)$1	222	20	49	15.7976
GGAGGGCGGAGCCUGACUCUCCGUCCCUU	chr1:155145165-155145476(-)$1	311	63	92	14.7238
GUUUACAUGCUACAGUCAAGAUGCGAAUC	chr3:160122228-160122483(+)$1	255	181	210	16.3146
GCCCGGGGCGCAGGGUCAGCGGCCGGGGC	chr4:1994567-1994816(-)$1	249	124	153	14.8993
UCGGACUGAGCUCAAAGUGCUCUUGGCGU	chr6:4777159-4777407(+)$1	248	149	178	16.1960
GCUCAGCUGGGUACAGGUGCCAGCCGGAG	chr9:100264432-100264711(+)$1	279	51	80	12.3411
CCGGGACCGGGACCUCCGCUCGCAGCCGG	chr2:97534065-97534312(-)$1	247	122	151	16.4096
CAUUUUGCUGGUUCUCCUCCAGCUCCGGU	chr11:6632903-6633153(-)$1	250	82	111	16.5145
CGCCUGGCUGGGCCCGCACCGGAGAGGCG	chr19:30433084-30433390(+)$1	306	88	117	16.7599
AAAGAGAAACUUAAAGACGGUAAUGCUCG	chr6:109702854-109703174(-)$1	320	243	272	16.9958
Ccggggggcgcggcgcgggcgugggcugg	chr14:90864145-90864415(+)$1	270	37	66	17.2008
GAGCUGGCUUUAAUCCUGAAAGCCAUGCA	chr21:35445942-35446226(+)$1	284	70	99	15.2590
aggaaaacacaaaauaauaguggcuucag	chr17:47026746-47026980(-)$1	234	31	60	13.1194
GCCCAGCUCCCUCUCCCCGGGAGCCGGGA	chrX:151142893-151143144(-)$1	251	138	167	15.1609
UAUGGUGGUGGUGCAUGUCCCUGCCUGUG	chr22:20123470-20123727(+)$1	257	98	127	16.3740
CCGUCGGUUCUGUCCGGGAGGAAUGACGG	chr3:183353790-183354104(+)$1	314	273	302	15.6518
cgcggagaacacggucccaguucuccugu	chr16:2205976-2206243(+)$1	267	190	219	12.9579
CUGGAGCCGGCGGCGUAGGUUGGCUCUUU	chr4:41937135-41937396(+)$1	261	39	68	16.3649
GGAACAACCCCCUAGUCUGGGGUUUCUCC	chr22:22006900-22007150(+)$1	250	153	182	15.5417
CGCUGGGACGCGUUUGUAGCUCCGGCCCC	chr1:44440622-44440903(+)$1	281	31	60	15.2020
GCCGGUGUCCUUAACUUCGGGAGUGCCGC	chr12:112035288-112035554(-)$1	266	221	250	16.2033
GUGGGGGUGGGGGGAGGGUCGGGUGUCGG	chr8:87354872-87355150(+)$1	278	67	96	16.9932
GAGCCGGGGCCUCGAAAUAUGGCUgcggc	chr12:123873662-123873943(+)$1	281	188	217	12.7025
cccguugaggcgaggcgggagucgacgga	chr10:976793-977058(-)$1	265	25	54	15.2053
CUUCCUCUGGCGAGCGCAGCCGGGCGGAA	chr12:133066657-133066945(+)$1	288	46	75	15.6512
UGCUGGUGCCUGUCGAAGGGGCAGCUGCA	chr8:1780061-1780353(+)$1	292	231	260	16.1078
CAGCUGAGACCGGGGUCAGGCGCAGCGGC	chr11:47600538-47600782(+)$1	244	187	216	15.5043
ACGCGGUGCUCAAGCUGGGAGCAGCGAGA	chr15:70389875-70390123(-)$1	248	177	206	15.8346
gcggccggagcgggacgggcccggcgcgg	chr11:46403154-46403400(+)$1	246	94	123	14.4400
CCGGCCCCGGCUCCCUGcgccgccgccgc	chr16:16043361-16043650(+)$1	289	90	119	15.6024
CGAGCGCGCCCCAAGCCCGGGCGCCACCG	chr12:125051792-125052101(-)$1	309	203	232	15.6767
GUCCCGCGUUCUCUCCUUGAAUCCACUCG	chr16:30076984-30077336(+)$1	352	179	208	16.2467
CCUCCCGCAGCCGCCGAGAUGCUGCGAAC	chr4:56502329-56502548(-)$1	219	171	200	12.1147
ACUCUACUGGGGCAAUGACGCAGAGGGAG	chr7:56173956-56174163(-)$1	207	150	179	15.6274
AAUUGAAAUGAACAUAAAUCAAAUGAAAU	chr2:201640205-201640441(+)$1	236	69	98	15.8991
CGCCCUCAGUGAGAUCCCCACUGAGGGUU	chr19:10764975-10765254(+)$1	279	245	274	16.9446
GCGGCCGAGGCAGAGGCGGCCUCCGGCCC	chr7:2394588-2394900(+)$1	312	178	207	16.3642
UUUGCCUCUGGUUGGUUUCCCGGGGAAGG	chr9:136132937-136133183(-)$1	246	88	117	15.6954
CGCCCGCAGCCACGCGGAGGCGGCGGGGA	chr7:50860872-50861110(-)$1	238	147	176	15.3880
UCAUCAGCGCCAUCAGGUAAGGCGGAGAC	chr19:36631903-36632180(+)$1	277	203	232	12.1438
GGGCCGGGAGCGUCGGAGGUACCCGGGUC	chr18:9137326-9137603(+)$1	277	243	272	15.0945
CUGUGAGGUGUGAAUGUGAGGCGUGACUG	chr5:649112-649375(+)$1	263	111	140	13.1439
GGCUCACCGCGUGUCCUUCCCGGUGAGGG	chr8:56792828-56793109(+)$1	281	134	163	13.8627
GCGCUGGGGGCGGAGGAGGCGAAUUAGUC	chr2:47403474-47403726(-)$1	252	51	80	15.2111
AGGGGUGCUGGAGGGUGGCCGGGGCCCUU	chr20:55969418-55969698(+)$1	280	133	162	16.8494
GUGAGGGCAGUACUGCUAACGCCUGAACA	chr2:122288496-122288702(+)$1	206	4	33	14.0170
AUGUGUGGGCUGAGAAGGGGCUCCGCAUC	chr22:50011584-50011866(-)$1	282	55	84	16.6392
GUCCACCGCCUGCAAGAAGGGCGAGUACA	chr19:10406933-10407183(+)$1	250	166	195	14.7583

#DB
(((((.(((((.......)).))))))))	chr13:92002724-92002942(+)$1	1	161	190	15.1496
(((((.(((((.........))))).)))	chr7:65447000-65447287(-)$1	1	178	207	12.4487
).(((((.(((.......))).))))).(	chr1:1256066-1256371(-)$1	1	89	118	14.1944
((.((((.(((.......))).)).)).)	chr6:36164560-36164856(-)$1	1	230	259	14.5790
(.(((..((((.........))))....)	chr12:54069736-54069964(-)$1	1	59	88	13.4195
((....(((((.........)))))))).	chr9:37485893-37486197(+)$1	1	232	261	13.2365
((.(((.((((.......)))).).)).)	chr3:179040795-179041175(+)$1	1	297	326	16.1133
(((((.(((((.......))))).)))))	chr3:179332658-179332880(+)$1	1	20	49	15.7976
(((((((((((.......))))).)))).	chr1:155145165-155145476(-)$1	1	63	92	14.7238
((((.(((.((.......))))).)))))	chr3:160122228-160122483(+)$1	1	181	210	16.3146
((((.((.(((.......))).)).))))	chr4:1994567-1994816(-)$1	1	124	153	14.8993
.(.((..((((.......)))))).).))	chr6:4777159-4777407(+)$1	1	149	178	16.1960
((((.(((((.........)))))..)))	chr9:100264432-100264711(+)$1	1	51	80	12.3411
((((...((((.......))))...))))	chr2:97534065-97534312(-)$1	1	122	151	16.4096
((((..(((((.......)))))...)))	chr11:6632903-6633153(-)$1	1	82	111	16.5145
(((((..((((.......))))..)))))	chr19:30433084-30433390(+)$1	1	88	117	16.7599
((.(((..(((.......)))....))).	chr6:109702854-109703174(-)$1	1	243	272	16.9958
((((...((((.......))))...))))	chr14:90864145-90864415(+)$1	1	37	66	17.2008
..(((((((((.......))))))).)))	chr21:35445942-35446226(+)$1	1	70	99	15.2590
..(((..(((.........)))..))).)	chr17:47026746-47026980(-)$1	1	31	60	13.1194
.(((.((((((.......)))))).))).	chrX:151142893-151143144(-)$1	1	138	167	15.1609
...(((((.((.......)))))))...)	chr22:20123470-20123727(+)$1	1	98	127	16.3740
((((((.((((.......)))).))))))	chr3:183353790-183354104(+)$1	1	273	302	15.6518
((((((((((.........))))))).))	chr16:2205976-2206243(+)$1	1	190	219	12.9579
..(((((((((.......)))))))))))	chr4:41937135-41937396(+)$1	1	39	68	16.3649
(((..((((((.......))))))..)))	chr22:22006900-22007150(+)$1	1	153	182	15.5417
.((((((..((.......)))))))).))	chr1:44440622-44440903(+)$1	1	31	60	15.2020
((.(((.((((.......))))..)))))	chr12:112035288-112035554(-)$1	1	221	250	16.2033
.(((.(.(.((.......)).).).))).	chr8:87354872-87355150(+)$1	1	67	96	16.9932
..((((.((((.........)))).))))	chr12:123873662-123873943(+)$1	1	188	217	12.7025
.(((((((..(.......)..))))))).	chr10:976793-977058(-)$1	1	25	54	15.2053
(((((((((((.......)))))).))))	chr12:133066657-133066945(+)$1	1	46	75	15.6512
(((.(.(((((.......))))).).)))	chr8:1780061-1780353(+)$1	1	231	260	16.1078
(.((((.(.((.......))).)))))))	chr11:47600538-47600782(+)$1	1	187	216	15.5043
.(.((.(((((.......))))).)).).	chr15:70389875-70390123(-)$1	1	177	206	15.8346
(((.((((.((.......)))))))))))	chr11:46403154-46403400(+)$1	1	94	123	14.4400
.((((...(((.......)))))))..))	chr16:16043361-16043650(+)$1	1	90	119	15.6024
...(.((((((.......)))))))...)	chr12:125051792-125052101(-)$1	1	203	232	15.6767
((...(.((((.......)))).))))))	chr16:30076984-30077336(+)$1	1	179	208	16.2467
((((.((((((.........))))))...	chr4:56502329-56502548(-)$1	1	171	200	12.1147
.((((.(((.(.......).)))..))))	chr7:56173956-56174163(-)$1	1	150	179	15.6274
(.((.(..(((.......)))..).)).)	chr2:201640205-201640441(+)$1	1	69	98	15.8991
.((((((((((.......)))))))))).	chr19:10764975-10765254(+)$1	1	245	274	16.9446
(((((((((((.......)))).))).))	chr7:2394588-2394900(+)$1	1	178	207	16.3642
(((.((((.((.......)).))))))).	chr9:136132937-136133183(-)$1	1	88	117	15.6954
(.(((((.(((.......))).)))))))	chr7:50860872-50861110(-)$1	1	147	176	15.3880
((.((..((((.........)))))))))	chr19:36631903-36632180(+)$1	1	203	232	12.1438
((((((((.((.......)).)))))..)	chr18:9137326-9137603(+)$1	1	243	272	15.0945
))((.(.((.(.......).)).).)).)	chr5:649112-649375(+)$1	1	111	140	13.1439
(.(((((((.(.......).)))))))((	chr8:56792828-56793109(+)$1	1	134	163	13.8627
(.(((((..((.......))...))))))	chr2:47403474-47403726(-)$1	1	51	80	15.2111
((((((.((((.......)))).))))))	chr20:55969418-55969698(+)$1	1	133	162	16.8494
((..((((.((.......))))))..)).	chr2:122288496-122288702(+)$1	1	4	33	14.0170
(((((.(((((.......)))))))))))	chr22:50011584-50011866(-)$1	1	55	84	16.6392
((..(((((((.......))))).)))).	chr19:10406933-10407183(+)$1	1	166	195	14.7583

#PSSM
c : 0.21	d : 0.14	g : 0.10	! : 0.10	f : 0.09	e : 0.07	b : 0.07	" : 0.05	[ : 0.03	# : 0.03	& : 0.01	% : 0.01	J : 0.01	
c : 0.20	d : 0.16	g : 0.12	f : 0.10	[ : 0.09	e : 0.07	" : 0.05	: : 0.03	a : 0.03	# : 0.03	b : 0.03	! : 0.01	= : 0.01	
c : 0.18	d : 0.16	g : 0.14	[ : 0.12	e : 0.10	f : 0.07	b : 0.05	# : 0.03	" : 0.03	! : 0.03	i : 0.01	= : 0.01	
g : 0.16	b : 0.14	c : 0.14	d : 0.14	e : 0.12	f : 0.07	! : 0.05	[ : 0.05	# : 0.01	i : 0.01	a : 0.01	" : 0.01	= : 0.01	
[ : 0.16	d : 0.14	g : 0.14	e : 0.12	b : 0.10	c : 0.09	f : 0.05	" : 0.05	! : 0.03	# : 0.01	i : 0.01	a : 0.01	= : 0.01	
[ : 0.12	f : 0.12	e : 0.10	! : 0.10	d : 0.10	a : 0.09	g : 0.09	c : 0.07	b : 0.05	" : 0.05	# : 0.01	i : 0.01	= : 0.01	
e : 0.27	[ : 0.16	! : 0.12	f : 0.10	c : 0.07	g : 0.07	" : 0.05	d : 0.05	b : 0.03	i : 0.01	= : 0.01	
d : 0.29	e : 0.21	f : 0.09	c : 0.07	[ : 0.07	! : 0.07	g : 0.07	a : 0.03	i : 0.01	" : 0.01	= : 0.01	b : 0.01	
d : 0.23	c : 0.18	e : 0.18	[ : 0.14	f : 0.09	g : 0.05	! : 0.05	i : 0.01	= : 0.01	b : 0.01	
d : 0.23	b : 0.20	e : 0.18	c : 0.14	f : 0.09	[ : 0.05	g : 0.03	i : 0.01	! : 0.01	= : 0.01	
d : 0.23	b : 0.20	e : 0.16	c : 0.12	f : 0.09	a : 0.07	r : 0.05	g : 0.01	i : 0.01	= : 0.01	
p : 0.83	r : 0.16	
p : 0.83	r : 0.16	
p : 0.83	r : 0.16	
p : 0.83	r : 0.16	
p : 0.83	r : 0.16	
p : 0.83	r : 0.16	
p : 0.83	r : 0.16	
b : 0.20	d : 0.18	r : 0.16	c : 0.12	e : 0.12	f : 0.07	a : 0.07	g : 0.01	i : 0.01	= : 0.01	
b : 0.20	d : 0.18	c : 0.14	e : 0.14	r : 0.10	f : 0.07	] : 0.05	g : 0.03	i : 0.01	2 : 0.01	= : 0.01	
d : 0.27	e : 0.20	c : 0.18	f : 0.10	] : 0.07	g : 0.05	i : 0.01	2 : 0.01	a : 0.01	= : 0.01	b : 0.01	3 : 0.01	
d : 0.30	e : 0.21	f : 0.10	] : 0.09	c : 0.07	g : 0.07	4 : 0.01	i : 0.01	a : 0.01	2 : 0.01	= : 0.01	b : 0.01	3 : 0.01	
e : 0.25	d : 0.14	] : 0.12	f : 0.10	2 : 0.07	g : 0.07	c : 0.05	b : 0.05	3 : 0.05	4 : 0.01	i : 0.01	= : 0.01	
e : 0.14	d : 0.14	f : 0.12	] : 0.10	g : 0.10	a : 0.09	2 : 0.07	b : 0.05	3 : 0.05	c : 0.03	4 : 0.01	i : 0.01	= : 0.01	
e : 0.18	] : 0.18	g : 0.14	d : 0.07	2 : 0.07	c : 0.07	3 : 0.05	f : 0.05	b : 0.05	4 : 0.03	a : 0.03	i : 0.01	= : 0.01	
c : 0.16	g : 0.16	e : 0.12	b : 0.12	d : 0.09	2 : 0.07	f : 0.07	] : 0.05	3 : 0.05	4 : 0.01	a : 0.01	i : 0.01	= : 0.01	
c : 0.18	d : 0.14	g : 0.14	b : 0.12	e : 0.10	] : 0.09	f : 0.05	4 : 0.03	3 : 0.03	2 : 0.03	i : 0.01	= : 0.01	
c : 0.18	d : 0.18	g : 0.14	e : 0.09	f : 0.07	] : 0.07	b : 0.07	: : 0.03	4 : 0.03	3 : 0.03	a : 0.01	H : 0.01	= : 0.01	2 : 0.01	
d : 0.20	f : 0.16	g : 0.12	c : 0.10	e : 0.09	] : 0.09	2 : 0.07	b : 0.05	9 : 0.01	H : 0.01	4 : 0.01	B : 0.01	: : 0.01	

#score	834.8500335467695
#seq	55
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_UTR_m3_run2.txt

#BEAR
[eeeeennnnneeee	chr9:134350836-134351116(+)$1	280	159	174	8.7017
b:eeeeellleeeee	chr1:245026257-245026508(-)$1	251	212	227	7.8126
ggggggmmmmggggg	chr8:94753045-94753286(-)$1	241	211	226	5.6040
:eeeeemmmmeeeee	chr20:25843563-25843811(-)$1	248	81	96	9.4282
:eeeeemmmmeeeee	chr4:1229669-1229957(-)$1	288	82	97	9.4282
[eeeeeooooooeee	chr7:1888838-1889078(-)$1	240	106	121	9.0264
"eeeeellleeeeec	chr19:39138284-39138537(+)$1	253	101	116	8.6022
eeeeennnnneeeee	chr19:11172458-11172716(+)$1	258	3	18	8.3733
eeeeennnnneeeee	chr7:1887475-1887711(-)$1	236	199	214	8.3733
[eeeeennnnneeee	chr16:89347434-89347678(-)$1	244	25	40	8.7017
:eeeeemmmmeeeee	chr16:87734510-87734761(-)$1	251	233	248	9.4282
""eeeeellleeeee	chr22:50013845-50014161(-)$1	316	46	61	9.0588
ggggggmmmmggggg	chr7:1133231-1133471(-)$1	240	118	133	5.6040
[eeeeemmmmeeeee	chr12:124809040-124809363(-)$1	323	149	164	10.2068
iiiiiimmmmiiiii	chr16:89347152-89347422(-)$1	270	172	187	5.4550
[eeeeemmmmeeeee	chr16:89349833-89350150(-)$1	317	193	208	10.2068
eeeeeooooooeeee	chr16:89348634-89348889(-)$1	255	2	17	8.8696
ddeeeeellleeeee	chr14:105713567-105713827(-)$1	260	219	234	8.8728
deeeeemmmmeeeee	chr7:1131212-1131475(-)$1	263	216	231	9.9074
deeeeemmmmeeeee	chr9:134350659-134350947(+)$1	288	190	205	9.9074
eeeeeeooooooeee	chr16:89350264-89350500(-)$1	236	119	134	8.8366
:eeeeemmmmeeeee	chr17:20799309-20799614(+)$1	305	212	227	9.4282
beeeeemmmmeeeee	chr19:13264606-13264852(+)$1	246	101	116	9.8595
:eeeeemmmmeeeee	chr16:87735153-87735409(-)$1	256	212	227	9.4282
!!eeeeellleeeee	chr16:87733212-87733515(-)$1	303	34	49	9.2792
eeeeeeooooooeee	chr16:89350307-89350602(-)$1	295	221	236	8.8366
!eeeeemmmmeeeee	chr4:1228556-1228826(-)$1	270	56	71	10.2388
eeeeeooooooeeee	chr16:89350125-89350439(-)$1	314	59	74	8.8696
eeeeennnnneeeee	chr16:89350802-89351075(-)$1	273	68	83	8.3733
qeeeee4444eeeee	chr22:20050697-20050991(+)$1	294	263	278	7.6934
:eeeeemmmmeeeee	chr16:87736083-87736342(-)$1	259	151	166	9.4282
eeeeeeooooooeee	chr7:1887361-1887627(-)$1	266	148	163	8.8366
!!eeeeellleeeee	chr16:87733377-87733640(-)$1	263	159	174	9.2792
======mmmm=====	chr7:100730254-100730506(+)$1	252	8	23	5.7838

#otherMatches

#Seq PSSM
GCUCCUGGAGAGGGA	chr9:134350836-134351116(+)$1	280	159	174	8.7017
GUGGGCUUCGGGCCU	chr1:245026257-245026508(-)$1	251	212	227	7.8126
CCUCGGGGCGCCGGG	chr8:94753045-94753286(-)$1	241	211	226	5.6040
ccagccucagggcug	chr20:25843563-25843811(-)$1	248	81	96	9.4282
GUAGCUGAGAGGCUG	chr4:1229669-1229957(-)$1	288	82	97	9.4282
GGGCUGGAAGGACGG	chr7:1888838-1889078(-)$1	240	106	121	9.0264
AUGGUGGACUACCAC	chr19:39138284-39138537(+)$1	253	101	116	8.6022
CCGCUCAGGAAGUGG	chr19:11172458-11172716(+)$1	258	3	18	8.3733
GGGACCCUCUGUCCC	chr7:1887475-1887711(-)$1	236	199	214	8.3733
UGGCUUCAAGUGGGC	chr16:89347434-89347678(-)$1	244	25	40	8.7017
UGAGUUGACUGACUc	chr16:87734510-87734761(-)$1	251	233	248	9.4282
ggagcuaaaauaguu	chr22:50013845-50014161(-)$1	316	46	61	9.0588
CAGUUGUCCCCAGCU	chr7:1133231-1133471(-)$1	240	118	133	5.6040
CCAGUAUUACUGCUG	chr12:124809040-124809363(-)$1	323	149	164	10.2068
UCCUUCCCUCGAAGG	chr16:89347152-89347422(-)$1	270	172	187	5.4550
AGCCGUGGGAACGGC	chr16:89349833-89350150(-)$1	317	193	208	10.2068
UCUUCAUCCAAGAAG	chr16:89348634-89348889(-)$1	255	2	17	8.8696
GCACGGCCAAGCCGU	chr14:105713567-105713827(-)$1	260	219	234	8.8728
CCUGGCAUUUGUCAG	chr7:1131212-1131475(-)$1	263	216	231	9.9074
CUGCGAGAGUUUGCG	chr9:134350659-134350947(+)$1	288	190	205	9.9074
AGCUGGGACUCGCCA	chr16:89350264-89350500(-)$1	236	119	134	8.8366
AGUGCGCCUGCGCAC	chr17:20799309-20799614(+)$1	305	212	227	9.4282
CGUCGAACCGUCGGC	chr19:13264606-13264852(+)$1	246	101	116	9.8595
ACCCAGCGGCCUGGG	chr16:87735153-87735409(-)$1	256	212	227	9.4282
CUCCGUGAGACGCGG	chr16:87733212-87733515(-)$1	303	34	49	9.2792
AGCUGGGACUCGCCA	chr16:89350307-89350602(-)$1	295	221	236	8.8366
UUCAUCCCCAGGUGA	chr4:1228556-1228826(-)$1	270	56	71	10.2388
GCUGGGACUCGCCAG	chr16:89350125-89350439(-)$1	314	59	74	8.8696
UCAGCCAAGAGCUGA	chr16:89350802-89351075(-)$1	273	68	83	8.3733
ACCAGGUAUUGCAGC	chr22:20050697-20050991(+)$1	294	263	278	7.6934
GAGCAGAGUCCUGCU	chr16:87736083-87736342(-)$1	259	151	166	9.4282
CACUUGACACAGCAA	chr7:1887361-1887627(-)$1	266	148	163	8.8366
CUCCGUGAGACGCGG	chr16:87733377-87733640(-)$1	263	159	174	9.2792
GCCAGGGACUCCUGG	chr7:100730254-100730506(+)$1	252	8	23	5.7838

#DB
.(((((.....))))	chr9:134350836-134351116(+)$1	1	159	174	8.7017
).(((((...)))))	chr1:245026257-245026508(-)$1	1	212	227	7.8126
((((((....)))))	chr8:94753045-94753286(-)$1	1	211	226	5.6040
.(((((....)))))	chr20:25843563-25843811(-)$1	1	81	96	9.4282
.(((((....)))))	chr4:1229669-1229957(-)$1	1	82	97	9.4282
.(((((......)))	chr7:1888838-1889078(-)$1	1	106	121	9.0264
.(((((...))))))	chr19:39138284-39138537(+)$1	1	101	116	8.6022
(((((.....)))))	chr19:11172458-11172716(+)$1	1	3	18	8.3733
(((((.....)))))	chr7:1887475-1887711(-)$1	1	199	214	8.3733
.(((((.....))))	chr16:89347434-89347678(-)$1	1	25	40	8.7017
.(((((....)))))	chr16:87734510-87734761(-)$1	1	233	248	9.4282
..(((((...)))))	chr22:50013845-50014161(-)$1	1	46	61	9.0588
((((((....)))))	chr7:1133231-1133471(-)$1	1	118	133	5.6040
.(((((....)))))	chr12:124809040-124809363(-)$1	1	149	164	10.2068
((((((....)))))	chr16:89347152-89347422(-)$1	1	172	187	5.4550
.(((((....)))))	chr16:89349833-89350150(-)$1	1	193	208	10.2068
(((((......))))	chr16:89348634-89348889(-)$1	1	2	17	8.8696
))(((((...)))))	chr14:105713567-105713827(-)$1	1	219	234	8.8728
)(((((....)))))	chr7:1131212-1131475(-)$1	1	216	231	9.9074
((((((....)))))	chr9:134350659-134350947(+)$1	1	190	205	9.9074
)(((((......)))	chr16:89350264-89350500(-)$1	1	119	134	8.8366
.(((((....)))))	chr17:20799309-20799614(+)$1	1	212	227	9.4282
)(((((....)))))	chr19:13264606-13264852(+)$1	1	101	116	9.8595
.(((((....)))))	chr16:87735153-87735409(-)$1	1	212	227	9.4282
..(((((...)))))	chr16:87733212-87733515(-)$1	1	34	49	9.2792
)(((((......)))	chr16:89350307-89350602(-)$1	1	221	236	8.8366
.(((((....)))))	chr4:1228556-1228826(-)$1	1	56	71	10.2388
(((((......))))	chr16:89350125-89350439(-)$1	1	59	74	8.8696
(((((.....)))))	chr16:89350802-89351075(-)$1	1	68	83	8.3733
.)))))....)))))	chr22:20050697-20050991(+)$1	1	263	278	7.6934
.(((((....)))))	chr16:87736083-87736342(-)$1	1	151	166	9.4282
((((((......)))	chr7:1887361-1887627(-)$1	1	148	163	8.8366
..(((((...)))))	chr16:87733377-87733640(-)$1	1	159	174	9.2792
((((((....)))))	chr7:100730254-100730506(+)$1	1	8	23	5.7838

#PSSM
e : 0.23	: : 0.17	[ : 0.14	d : 0.08	! : 0.08	b : 0.05	g : 0.05	" : 0.05	i : 0.02	q : 0.02	= : 0.02	
e : 0.73	g : 0.05	! : 0.05	: : 0.02	" : 0.02	i : 0.02	d : 0.02	= : 0.02	
e : 0.88	g : 0.05	i : 0.02	= : 0.02	
e : 0.88	g : 0.05	i : 0.02	= : 0.02	
e : 0.88	g : 0.05	i : 0.02	= : 0.02	
e : 0.73	n : 0.08	g : 0.05	o : 0.05	i : 0.02	= : 0.02	
m : 0.47	o : 0.17	n : 0.14	e : 0.14	l : 0.02	4 : 0.02	
m : 0.47	l : 0.17	o : 0.17	n : 0.14	4 : 0.02	
m : 0.47	l : 0.17	o : 0.17	n : 0.14	4 : 0.02	
m : 0.47	o : 0.17	n : 0.14	l : 0.14	e : 0.02	4 : 0.02	
e : 0.64	o : 0.17	n : 0.05	g : 0.05	i : 0.02	= : 0.02	
e : 0.76	o : 0.11	g : 0.05	i : 0.02	= : 0.02	
e : 0.88	g : 0.05	i : 0.02	= : 0.02	
e : 0.88	g : 0.05	i : 0.02	= : 0.02	
e : 0.85	g : 0.05	c : 0.02	i : 0.02	= : 0.02	

#score	295.7411917223618
#seq	34
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_UTR_m3_run1.txt

#BEAR
fffffoooooofffff	chr22:22890177-22890430(-)$1	253	83	99	10.0193
eeeeeooooooeeeee	chr5:70806029-70806277(+)$1	248	159	175	11.6018
eeeeeooooooeeeee	chr12:122992666-122992913(-)$1	247	40	56	11.6018
:ddddoooooodddd:	chr7:27832583-27832810(+)$1	227	183	199	8.3226
fffffoooooofffff	chr3:169700848-169701142(+)$1	294	213	229	10.0193
eeeeeooooooeeeee	chr4:68358489-68358789(-)$1	300	90	106	11.6018
eeeeeooooooeeeee	chr2:187368820-187369039(+)$1	219	17	33	11.6018
fffffoooooofffff	chr5:33467644-33467905(+)$1	261	162	178	10.0193
eee[aooooooa]eee	chr12:46357788-46358061(-)$1	273	239	255	10.6569
:ddddoooooodddd:	chr2:190339931-190340257(+)$1	326	163	179	8.3226
:eeeeennnnneeeee	chr21:40571099-40571412(-)$1	313	6	22	6.5113
:ddddoooooodddd:	chr3:167727895-167728134(-)$1	239	219	235	8.3226
fffffoooooofffff	chr18:9254585-9254877(+)$1	292	200	216	10.0193
eeeeerrrrrrrrree	chr1:220195597-220195855(-)$1	258	95	111	6.8230

#otherMatches

#Seq PSSM
ACAUUCAGACAAAUGU	chr22:22890177-22890430(-)$1	253	83	99	10.0193
UUUGGAAGAAACUGAA	chr5:70806029-70806277(+)$1	248	159	175	11.6018
GACAGGAAUAGCUGUU	chr12:122992666-122992913(-)$1	247	40	56	11.6018
AUAAAGAAAAAUUUAA	chr7:27832583-27832810(+)$1	227	183	199	8.3226
AGAAGUUCAGUUUUCU	chr3:169700848-169701142(+)$1	294	213	229	10.0193
UGGAGUACUAUCUCCA	chr4:68358489-68358789(-)$1	300	90	106	11.6018
GCAUGUAUCGUCAUGC	chr2:187368820-187369039(+)$1	219	17	33	11.6018
AUUUUAAUGAAAAAAU	chr5:33467644-33467905(+)$1	261	162	178	10.0193
UAUACAUUUCAGAAUA	chr12:46357788-46358061(-)$1	273	239	255	10.6569
ACUGAGAAAAUUUAGG	chr2:190339931-190340257(+)$1	326	163	179	8.3226
GUAGAAGAGAAUUCUA	chr21:40571099-40571412(-)$1	313	6	22	6.5113
GCAUACAUUUAUAUGA	chr3:167727895-167728134(-)$1	239	219	235	8.3226
UGGACUAGAUUGUUCA	chr18:9254585-9254877(+)$1	292	200	216	10.0193
UGGAUGCAUGAGAGAU	chr1:220195597-220195855(-)$1	258	95	111	6.8230

#DB
(((((......)))))	chr22:22890177-22890430(-)$1	1	83	99	10.0193
(((((......)))))	chr5:70806029-70806277(+)$1	1	159	175	11.6018
(((((......)))))	chr12:122992666-122992913(-)$1	1	40	56	11.6018
.((((......)))).	chr7:27832583-27832810(+)$1	1	183	199	8.3226
(((((......)))))	chr3:169700848-169701142(+)$1	1	213	229	10.0193
(((((......)))))	chr4:68358489-68358789(-)$1	1	90	106	11.6018
(((((......)))))	chr2:187368820-187369039(+)$1	1	17	33	11.6018
(((((......)))))	chr5:33467644-33467905(+)$1	1	162	178	10.0193
(((.(......).)))	chr12:46357788-46358061(-)$1	1	239	255	10.6569
.((((......)))).	chr2:190339931-190340257(+)$1	1	163	179	8.3226
.(((((.....)))))	chr21:40571099-40571412(-)$1	1	6	22	6.5113
.((((......)))).	chr3:167727895-167728134(-)$1	1	219	235	8.3226
(((((......)))))	chr18:9254585-9254877(+)$1	1	200	216	10.0193
(((((.........))	chr1:220195597-220195855(-)$1	1	95	111	6.8230

#PSSM
e : 0.42	f : 0.28	: : 0.28	
e : 0.49	f : 0.28	d : 0.21	
e : 0.49	f : 0.28	d : 0.21	
e : 0.42	f : 0.28	d : 0.21	[ : 0.07	
e : 0.42	f : 0.28	d : 0.21	a : 0.07	
o : 0.85	e : 0.07	r : 0.07	
o : 0.85	n : 0.07	r : 0.07	
o : 0.85	n : 0.07	r : 0.07	
o : 0.85	n : 0.07	r : 0.07	
o : 0.85	n : 0.07	r : 0.07	
o : 0.85	n : 0.07	r : 0.07	
e : 0.35	f : 0.28	d : 0.21	a : 0.07	r : 0.07	
e : 0.35	f : 0.28	d : 0.21	] : 0.07	r : 0.07	
e : 0.42	f : 0.28	d : 0.21	r : 0.07	
e : 0.49	f : 0.28	d : 0.21	
e : 0.49	f : 0.28	: : 0.21	

#score	135.4442711149785
#seq	14
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_transcript_m2_run1.txt

#BEAR
b"""eeeeennnnneeeee333	chr19:34878763-34879033(+)$1	270	84	106	8.0711
====eeeeeooooooeeeeea[	chr16:31199361-31199602(+)$1	241	115	137	12.1768
ccc[bb[bboooooobb]bb]c	chr17:79231844-79232098(-)$1	254	8	30	11.0600
ddgggggggooooooggggggg	chr16:89967307-89967721(+)$1	414	175	197	11.8358
ff"""ddddoooooodddd]ff	chrX:13333166-13333392(+)$1	226	32	54	12.6227
ccc!!ddddoooooodddd22c	chr19:41114747-41115008(+)$1	261	102	124	12.5696
eeeccc[bboooooobb]ccc=	chr9:136137694-136137981(-)$1	287	175	197	11.8747
!bb[eeeeeooooooeeeee]b	chr17:56408722-56408987(-)$1	265	48	70	12.1028
Eeeeee!!aooooooa22eeee	chr22:49971004-49971241(-)$1	237	188	210	10.5738
e"""eeeeeooooooeeeeeee	chr6:158982901-158983146(+)$1	245	5	27	12.5224
bb[ccccccooooooccc]ccc	chr22:48156499-48156764(+)$1	265	137	159	11.6104
%%gggggggooooooggggggg	chr22:50050325-50050606(-)$1	281	187	209	10.8073
eeee[ddddoooooodddd]ee	chr22:49982887-49983155(-)$1	268	163	185	12.2930
eeee[ddddooooooddddeee	chr11:2712966-2713311(-)$1	345	75	97	12.1675
dddd!!cccooooooccc4444	chr19:50168058-50168449(-)$1	391	318	340	11.6624
cc[ccc[bboooooobbccc]c	chr19:34881110-34881367(+)$1	257	213	235	12.2396
hhh[eeeeeooooooeeeeehh	chr16:31199230-31199483(+)$1	253	161	183	11.6333
dddddd[bboooooobbdddd4	chr2:132044608-132044884(+)$1	276	112	134	11.1885
ccgggggggooooooggggggg	chr19:34875459-34875708(+)$1	249	52	74	12.1022
dddd[ddddoooooodddd]dd	chr8:130453383-130453659(-)$1	276	151	173	11.7357
b####ddddooooooddddbb]	chr22:23540318-23540564(+)$1	246	110	132	11.7849
fffff!!bboooooobbfffff	chr17:27161050-27161301(-)$1	251	137	159	11.4396
!bb[ccc[aooooooa]cccbb	chr19:34876756-34876995(+)$1	239	165	187	10.9736
ca!!eeeeeooooooeeeee22	chr11:3062701-3062990(-)$1	289	11	33	12.7603
ffffff[bboooooobbfffff	chr21:46364441-46364710(+)$1	269	174	196	11.3091
"dddd[cccooooooccc]ddd	chr16:85663326-85663592(+)$1	266	91	113	10.8123
ccc[a[cccooooooccc]a33	chr16:89032452-89032751(-)$1	299	178	200	12.4539
eebb[ddddoooooodddd]bb	chr9:139997279-139997502(+)$1	223	190	212	11.3767
gggccc[bboooooobbccc22	chr22:20111032-20111289(+)$1	257	223	245	11.9365
ff!!eeeeeooooooeeeee22	chr16:31198403-31198667(+)$1	264	168	190	12.6331
ddd[eeeeeooooooeeeee]d	chr16:81516641-81516889(+)$1	248	113	135	12.2281
::gggggggooooooggggggg	chr2:132044072-132044345(+)$1	273	107	129	10.2725
eee####bboooooobb333ee	chr3:195418879-195419197(+)$1	318	153	175	11.6785
fffccccccooooooccc]ccc	chr5:176911536-176911810(-)$1	274	219	241	11.6568
fffff!!bboooooobb]ffff	chr2:236415868-236416144(+)$1	276	53	75	11.5484
c[a!!eeeeennnnneeeee33	chr22:48209038-48209392(+)$1	354	165	187	8.2442
"""a[ddddoooooodddd]a3	chr5:176911278-176911534(-)$1	256	8	30	12.8430
eeee[ddddoooooodddd]ee	chr16:31198470-31198699(+)$1	229	170	192	12.2930
fff!!ddddooooooddddfff	chr2:3323229-3323530(-)$1	301	54	76	12.4346
cccffffffooooooffffff]	chr6:43589449-43589702(-)$1	253	166	188	11.0397
::gggggggooooooggggggg	chr10:126763209-126763472(-)$1	263	21	43	10.2725
eeee[ddddoooooodddd]ee	chr19:34882998-34883269(+)$1	271	93	115	12.2930
ccc[eeeeennnnneeeee]cc	chr2:132039917-132040225(+)$1	308	189	211	7.8599
##gggggggooooooggggggg	chr9:136148561-136148839(-)$1	278	185	207	12.0093
ccc[eeeeeooooooeeeee]c	chr16:21990544-21990847(+)$1	303	187	209	12.7763
bb"""ddddoooooodddd333	chr1:93297810-93298080(+)$1	270	206	228	12.7724
[eeeee[bboooooobb]eeee	chr16:87771962-87772263(-)$1	301	270	292	11.9617
eeeeeddddooooooddddfff	chr17:26960691-26960987(-)$1	296	143	165	12.0038
[bbccc[bboooooobb]ccc]	chr22:19389445-19389717(-)$1	272	134	156	11.6558
ff!!eeeeeooooooeeeee22	chr16:31198562-31198847(+)$1	285	9	31	12.6331
ffff[ddddoooooodddd]ff	chr1:228278367-228278628(+)$1	261	98	120	12.2911
e!!ffffffooooooffffff3	chr1:220379851-220380144(-)$1	293	263	285	11.3106
gggg"""bboooooobb333gg	chr13:114243482-114243751(+)$1	269	23	45	12.0250
g!!ccc!!aooooooa22ccc]	chr10:81109717-81110037(+)$1	320	205	227	11.7706
ggg[eeeeeooooooeeeeegg	chr17:80421492-80421781(+)$1	289	211	233	12.7153
a!!ccc[bboooooobbccc]a	chr19:34877901-34878166(+)$1	265	147	169	12.2669

#otherMatches

#Seq PSSM
UGGGCUCUUAUAUCAAGGGAAA	chr19:34878763-34879033(+)$1	270	84	106	8.0711
AGGCGACCCAGGAAAGGGUUUG	chr16:31199361-31199602(+)$1	241	115	137	12.1768
CGGGCUGAGGCUGAGCUGGGGU	chr17:79231844-79232098(-)$1	254	8	30	11.0600
GGGCAUUGGAUUGUACCAGUGC	chr16:89967307-89967721(+)$1	414	175	197	11.8358
GUUCAUGGUAAACUCACCACAC	chrX:13333166-13333392(+)$1	226	32	54	12.6227
UAUUACAGGUGGGAUUCUGGGG	chr19:41114747-41115008(+)$1	261	102	124	12.5696
GCUGGGAGGAGCAGACCGCCUC	chr9:136137694-136137981(-)$1	287	175	197	11.8747
AGUGUCUCUGAAACUGGGGGGA	chr17:56408722-56408987(-)$1	265	48	70	12.1028
uggagcaggcaggcacaggcuc	chr22:49971004-49971241(-)$1	237	188	210	10.5738
CUGGAAACUGAGAAGAGUUUGG	chr6:158982901-158983146(+)$1	245	5	27	12.5224
gagccacuggaugaauggaugg	chr22:48156499-48156764(+)$1	265	137	159	11.6104
UGCCUGCCUGUGGCGGGGCAGG	chr22:50050325-50050606(-)$1	281	187	209	10.8073
GGGGAGCUCACAGAGGGGCCCU	chr22:49982887-49983155(-)$1	268	163	185	12.2930
UUGGUGCUGAGGGAACAGCUUA	chr11:2712966-2713311(-)$1	345	75	97	12.1675
GCGCCCAGGAAAUGCCCUAUAC	chr19:50168058-50168449(-)$1	391	318	340	11.6624
GGGGCUCUGGGUCUGCAAGUGU	chr19:34881110-34881367(+)$1	257	213	235	12.2396
AGCAUUUGCUGAAGUGUGGAGU	chr16:31199230-31199483(+)$1	253	161	183	11.6333
GGACCUAGGGAAAUACCAGGUA	chr2:132044608-132044884(+)$1	276	112	134	11.1885
CUCAUCUAGAAAGACCUGGAUG	chr19:34875459-34875708(+)$1	249	52	74	12.1022
agccauggagcaguguccaggg	chr8:130453383-130453659(-)$1	276	151	173	11.7357
GAUUAGGGUCCGAGUGCUCCCC	chr22:23540318-23540564(+)$1	246	110	132	11.7849
acaguagucaugguggaauugu	chr17:27161050-27161301(-)$1	251	137	159	11.4396
AGCACAGGUAGGCAAAGCUGGC	chr19:34876756-34876995(+)$1	239	165	187	10.9736
GCAGGUUUUGAGAAGAAGGCAG	chr11:3062701-3062990(-)$1	289	11	33	12.7603
GUGAAGACUGCAUGUGGCUUCA	chr21:46364441-46364710(+)$1	269	174	196	11.3091
GGAUUGAGGGGGCGGCCUGGAU	chr16:85663326-85663592(+)$1	266	91	113	10.8123
GUGACCCUCAGAGCAGAGCGAC	chr16:89032452-89032751(-)$1	299	178	200	12.4539
AGGUCGGUGGUGUUACAUUCAC	chr9:139997279-139997502(+)$1	223	190	212	11.3767
CUGGCCUGCAAAGAAGUGGCAG	chr22:20111032-20111289(+)$1	257	223	245	11.9365
UUUAAUUCUGGAAGAGGGAUGU	chr16:31198403-31198667(+)$1	264	168	190	12.6331
gguggccuuuggaauaggguga	chr16:81516641-81516889(+)$1	248	113	135	12.2281
AUGUGGAGGGAGGGACCUCCAU	chr2:132044072-132044345(+)$1	273	107	129	10.2725
aaugaugccaucaccggaaagu	chr3:195418879-195419197(+)$1	318	153	175	11.6785
agggaggcugugagaagcacuc	chr5:176911536-176911810(-)$1	274	219	241	11.6568
GUUUAGGAUGAGAAGAUGUAAA	chr2:236415868-236416144(+)$1	276	53	75	11.5484
AGUGAUGGAGGGCAGCUCUAGG	chr22:48209038-48209392(+)$1	354	165	187	8.2442
gguggaccugguguggggugug	chr5:176911278-176911534(-)$1	256	8	30	12.8430
GAAUGGUGUCAAUGAAUGCAAU	chr16:31198470-31198699(+)$1	229	170	192	12.2930
UGCAGGGGUGGUGUUGCCCGCA	chr2:3323229-3323530(-)$1	301	54	76	12.4346
UUGCUGCAGGACAAACUGCGGA	chr6:43589449-43589702(-)$1	253	166	188	11.0397
AUUGAGCUGCCAUCUCAGCUCA	chr10:126763209-126763472(-)$1	263	21	43	10.2725
GAGGAGGUUGGAUCUGGCCCCC	chr19:34882998-34883269(+)$1	271	93	115	12.2930
GAUGGUGAGUUCUCUUCaugau	chr2:132039917-132040225(+)$1	308	189	211	7.8599
GAUGACCAUGAGGAUGUGGUUG	chr9:136148561-136148839(-)$1	278	185	207	12.0093
ugugugaaccucaguguucaga	chr16:21990544-21990847(+)$1	303	187	209	12.7763
CCUAGCUGGGGAACGCCAGAAU	chr1:93297810-93298080(+)$1	270	206	228	12.7724
GAUAUAGAugugugugugugug	chr16:87771962-87772263(-)$1	301	270	292	11.9617
AGACCCUUCUGGAGUGAAGGAG	chr17:26960691-26960987(-)$1	296	143	165	12.0038
gacggcagugaggggacagcca	chr22:19389445-19389717(-)$1	272	134	156	11.6558
UUUAAUUCUGGAAGAGGGAUGU	chr16:31198562-31198847(+)$1	285	9	31	12.6331
agggguuuuauucuagagggcc	chr1:228278367-228278628(+)$1	261	98	120	12.2911
gaacugguuaaguaaaaucggg	chr1:220379851-220380144(-)$1	293	263	285	11.3106
UUUAUUGCACUUAUUUGAAUUA	chr13:114243482-114243751(+)$1	269	23	45	12.0250
CAGGGCAGGAACACACACGCCA	chr10:81109717-81110037(+)$1	320	205	227	11.7706
CUGAGCCUCAAGGGAGAGGCCA	chr17:80421492-80421781(+)$1	289	211	233	12.7153
UGAAGCCUGGUCUAUCAGCUGA	chr19:34877901-34878166(+)$1	265	147	169	12.2669

#DB
(...(((((.....)))))...	chr19:34878763-34879033(+)$1	1	84	106	8.0711
))))(((((......)))))(.	chr16:31199361-31199602(+)$1	1	115	137	12.1768
(((.((.((......)).)).)	chr17:79231844-79232098(-)$1	1	8	30	11.0600
))(((((((......)))))))	chr16:89967307-89967721(+)$1	1	175	197	11.8358
((...((((......)))).))	chrX:13333166-13333392(+)$1	1	32	54	12.6227
(((..((((......))))..)	chr19:41114747-41115008(+)$1	1	102	124	12.5696
)))(((.((......)).)))(	chr9:136137694-136137981(-)$1	1	175	197	11.8747
.((.(((((......))))).)	chr17:56408722-56408987(-)$1	1	48	70	12.1028
)(((((..(......)..))))	chr22:49971004-49971241(-)$1	1	188	210	10.5738
(...(((((......)))))))	chr6:158982901-158983146(+)$1	1	5	27	12.5224
((.((((((......))).)))	chr22:48156499-48156764(+)$1	1	137	159	11.6104
..(((((((......)))))))	chr22:50050325-50050606(-)$1	1	187	209	10.8073
((((.((((......)))).))	chr22:49982887-49983155(-)$1	1	163	185	12.2930
((((.((((......)))))))	chr11:2712966-2713311(-)$1	1	75	97	12.1675
((((..(((......)))....	chr19:50168058-50168449(-)$1	1	318	340	11.6624
((.(((.((......))))).)	chr19:34881110-34881367(+)$1	1	213	235	12.2396
(((.(((((......)))))))	chr16:31199230-31199483(+)$1	1	161	183	11.6333
((((((.((......)))))).	chr2:132044608-132044884(+)$1	1	112	134	11.1885
(((((((((......)))))))	chr19:34875459-34875708(+)$1	1	52	74	12.1022
((((.((((......)))).))	chr8:130453383-130453659(-)$1	1	151	173	11.7357
(....((((......)))))).	chr22:23540318-23540564(+)$1	1	110	132	11.7849
(((((..((......)))))))	chr17:27161050-27161301(-)$1	1	137	159	11.4396
.((.(((.(......).)))))	chr19:34876756-34876995(+)$1	1	165	187	10.9736
((..(((((......)))))..	chr11:3062701-3062990(-)$1	1	11	33	12.7603
((((((.((......)))))))	chr21:46364441-46364710(+)$1	1	174	196	11.3091
.((((.(((......))).)))	chr16:85663326-85663592(+)$1	1	91	113	10.8123
(((.(.(((......))).)..	chr16:89032452-89032751(-)$1	1	178	200	12.4539
))((.((((......)))).))	chr9:139997279-139997502(+)$1	1	190	212	11.3767
((((((.((......)))))..	chr22:20111032-20111289(+)$1	1	223	245	11.9365
((..(((((......)))))..	chr16:31198403-31198667(+)$1	1	168	190	12.6331
(((.(((((......))))).)	chr16:81516641-81516889(+)$1	1	113	135	12.2281
..(((((((......)))))))	chr2:132044072-132044345(+)$1	1	107	129	10.2725
(((....((......))...))	chr3:195418879-195419197(+)$1	1	153	175	11.6785
(((((((((......))).)))	chr5:176911536-176911810(-)$1	1	219	241	11.6568
(((((..((......)).))))	chr2:236415868-236416144(+)$1	1	53	75	11.5484
(.(..(((((.....)))))..	chr22:48209038-48209392(+)$1	1	165	187	8.2442
...(.((((......)))).).	chr5:176911278-176911534(-)$1	1	8	30	12.8430
((((.((((......)))).))	chr16:31198470-31198699(+)$1	1	170	192	12.2930
(((..((((......)))))))	chr2:3323229-3323530(-)$1	1	54	76	12.4346
(((((((((......)))))).	chr6:43589449-43589702(-)$1	1	166	188	11.0397
..(((((((......)))))))	chr10:126763209-126763472(-)$1	1	21	43	10.2725
((((.((((......)))).))	chr19:34882998-34883269(+)$1	1	93	115	12.2930
(((.(((((.....))))).))	chr2:132039917-132040225(+)$1	1	189	211	7.8599
..(((((((......)))))))	chr9:136148561-136148839(-)$1	1	185	207	12.0093
(((.(((((......))))).)	chr16:21990544-21990847(+)$1	1	187	209	12.7763
((...((((......))))...	chr1:93297810-93298080(+)$1	1	206	228	12.7724
.(((((.((......)).))))	chr16:87771962-87772263(-)$1	1	270	292	11.9617
)))))((((......))))(((	chr17:26960691-26960987(-)$1	1	143	165	12.0038
.(((((.((......)).))).	chr22:19389445-19389717(-)$1	1	134	156	11.6558
((..(((((......)))))..	chr16:31198562-31198847(+)$1	1	9	31	12.6331
((((.((((......)))).))	chr1:228278367-228278628(+)$1	1	98	120	12.2911
(..((((((......)))))).	chr1:220379851-220380144(-)$1	1	263	285	11.3106
((((...((......))...))	chr13:114243482-114243751(+)$1	1	23	45	12.0250
(..(((..(......)..))).	chr10:81109717-81110037(+)$1	1	205	227	11.7706
(((.(((((......)))))))	chr17:80421492-80421781(+)$1	1	211	233	12.7153
(..(((.((......))))).)	chr19:34877901-34878166(+)$1	1	147	169	12.2669

#PSSM
c : 0.17	e : 0.17	f : 0.16	d : 0.08	b : 0.07	g : 0.07	! : 0.03	" : 0.03	: : 0.03	[ : 0.03	= : 0.01	E : 0.01	% : 0.01	h : 0.01	# : 0.01	a : 0.01	
e : 0.17	f : 0.16	c : 0.14	d : 0.10	b : 0.08	" : 0.05	g : 0.05	! : 0.05	# : 0.03	: : 0.03	= : 0.01	% : 0.01	h : 0.01	a : 0.01	[ : 0.01	
g : 0.16	e : 0.16	c : 0.10	f : 0.10	! : 0.10	" : 0.08	d : 0.08	b : 0.07	[ : 0.03	= : 0.01	h : 0.01	# : 0.01	a : 0.01	
[ : 0.16	c : 0.14	g : 0.12	e : 0.12	! : 0.10	f : 0.10	" : 0.07	d : 0.07	# : 0.03	= : 0.01	b : 0.01	a : 0.01	
e : 0.26	c : 0.16	[ : 0.14	g : 0.10	f : 0.08	! : 0.07	" : 0.05	d : 0.03	# : 0.03	b : 0.01	a : 0.01	
e : 0.26	d : 0.26	c : 0.16	g : 0.10	! : 0.05	f : 0.05	[ : 0.03	b : 0.01	# : 0.01	" : 0.01	
d : 0.24	e : 0.23	[ : 0.16	g : 0.10	c : 0.10	! : 0.07	f : 0.03	# : 0.01	" : 0.01	
d : 0.24	e : 0.23	b : 0.23	g : 0.10	c : 0.08	! : 0.03	f : 0.03	[ : 0.01	
d : 0.24	e : 0.23	b : 0.23	g : 0.10	c : 0.08	a : 0.05	f : 0.03	
o : 0.94	n : 0.03	e : 0.01	
o : 0.94	n : 0.05	
o : 0.94	n : 0.05	
o : 0.94	n : 0.05	
o : 0.94	n : 0.05	
o : 0.94	e : 0.03	n : 0.01	
d : 0.24	e : 0.23	b : 0.23	g : 0.10	c : 0.08	a : 0.05	f : 0.03	
d : 0.24	e : 0.23	b : 0.23	g : 0.10	c : 0.08	2 : 0.03	f : 0.03	] : 0.01	
d : 0.26	e : 0.23	c : 0.16	g : 0.10	] : 0.08	f : 0.07	2 : 0.03	3 : 0.03	
e : 0.26	d : 0.26	c : 0.12	g : 0.10	f : 0.08	] : 0.07	3 : 0.03	b : 0.01	4 : 0.01	
e : 0.24	] : 0.16	c : 0.16	f : 0.12	g : 0.10	3 : 0.07	b : 0.03	d : 0.03	2 : 0.01	4 : 0.01	a : 0.01	
f : 0.16	g : 0.14	e : 0.14	] : 0.10	c : 0.10	2 : 0.08	3 : 0.07	d : 0.05	b : 0.05	a : 0.03	4 : 0.01	h : 0.01	
g : 0.14	e : 0.14	c : 0.12	f : 0.12	3 : 0.10	] : 0.07	2 : 0.07	b : 0.05	d : 0.05	4 : 0.03	[ : 0.01	= : 0.01	h : 0.01	a : 0.01	

#score	653.1887151753579
#seq	56
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_CDS_m2_run1.txt

#BEAR
c[ccc[ccc[bblllbb]cccccc]ccc	chr11:2154680-2154892(-)$1	212	108	136	9.1467
iiii[eeeee[annnnna]eeeeeiiii	chr15:67391093-67391391(+)$1	298	72	100	11.0904
ggggggg"""bbmmmmbb333ggggggg	chr11:63884821-63885062(-)$1	241	138	166	10.8464
::==========lll==========FFF	chr12:123464867-123465168(+)$1	301	241	269	8.6092
ba[dddd!!bboooooobb22dddd]a]	chr17:80197779-80198016(+)$1	237	149	177	8.9609
::eeeee"""bbnnnnnbb333eeeeeG	chr11:2154126-2154330(-)$1	204	130	158	10.8750
c[ccc[ccc[bblllbb]cccccc]ccc	chr11:2154662-2154876(-)$1	214	92	120	9.1467
::eeeee"""bbnnnnnbb333eeeeeG	chr11:2154130-2154333(-)$1	203	133	161	10.8750
""ggggggg!!annnnna22gggggggf	chr11:2156505-2156728(-)$1	223	159	187	12.7114
e####gggggggnnnnngggggggeeee	chr11:126146201-126146444(+)$1	243	59	87	11.2946
d[a[ccc!!cccnnnnnccc22ccc]a2	chr3:195622172-195622530(-)$1	358	59	87	11.9074
===========oooooo===========	chr17:36760606-36760863(-)$1	257	190	218	12.5716
a[ggggggg!!aooooooa22ggggggg	chr1:36788393-36788683(+)$1	290	13	41	11.9054
ff]iiiiiiiii]aa]============	chr16:447154-447376(+)$1	222	96	124	8.5239
[a[eeeeeddddnnnnndddd]eeeee]	chr6:24719983-24720189(-)$1	206	90	118	9.6217
fff"""ccc[bblllbb]ccc333ffff	chr16:2029113-2029369(+)$1	256	147	175	9.2587
ggggggg!!cccnnnnnccc]ggggggg	chr21:47565373-47565653(-)$1	280	58	86	12.9812
c[ccc[ccc[bblllbb]cccccc]ccc	chr11:2154692-2154931(-)$1	239	147	175	9.1467
iiiiiiiii$$$$$==============	chr10:104503716-104503992(+)$1	276	57	85	8.3474
c####ccc[a[bblllbb]a]ccc]ccc	chr17:79913314-79913580(-)$1	266	67	95	8.9890
geeeee"""cccooooooccc22eeeee	chr19:2270512-2270768(+)$1	256	13	41	10.8409
dddgggggggbbmmmmbb]ggggggg33	chr20:62371220-62371504(+)$1	284	86	114	8.4946
iii[eeeee!!ccclllccc22eeeee2	chr19:59073428-59073678(+)$1	250	107	135	9.2064
[ffffff"""bbnnnnnbb333ffffff	chr11:2154133-2154338(-)$1	205	138	166	12.7370
ddd"""ccccccnnnnnccc4444ccc3	chr11:63884862-63885119(-)$1	257	83	111	11.0229
iiiiiii!!bboooooobb22iiiiiii	chr16:88798214-88798471(+)$1	257	187	215	11.7689
f[==========nnnnn==========f	chr15:35271713-35271985(-)$1	272	128	156	13.7446
::eeeee"""bbnnnnnbb333eeeeeG	chr11:2154138-2154341(-)$1	203	141	169	10.8750
h####gggggggooooooggggggg666	chr19:42752575-42752831(-)$1	256	135	163	8.6060
ddddeeeee[cccnnnnnccc22eeeee	chr22:37904893-37905151(-)$1	258	188	216	9.0979
fff[ccc"""bbnnnnnbb333ccc22f	chr14:24901491-24901781(+)$1	290	57	85	12.6750
===========rrrrrrrrr========	chr17:7491207-7491527(+)$1	320	171	199	9.9784
============nnnnn===========	chr16:4744417-4744680(+)$1	263	216	244	13.8868
iiiiiiiii!!annnnna22iiiiiiii	chr17:58469092-58469368(-)$1	276	95	123	13.2639
eeeee[ffffffnnnnnffffff]eeee	chr3:126722009-126722292(+)$1	283	201	229	9.4937
ffffff####bbnnnnnbbffffff]bb	chr7:766562-766860(-)$1	298	60	88	10.6184
Feeeee[ccc[aooooooa]ccceeeee	chr6:33178889-33179179(+)$1	290	34	62	9.9266
eeeee[a[ddddnnnnndddd]a]eeee	chr14:24901148-24901446(+)$1	298	175	203	9.8221
!dddd####cccnnnnnccc4444dddd	chr17:34171479-34171733(+)$1	254	34	62	10.6848
ccc[ccc!!bb[allla]bb22ccc]cc	chr5:137688272-137688618(+)$1	346	177	205	9.8892
[bb!!gggggggnnnnnggggggg22bb	chr17:46137115-46137394(+)$1	279	59	87	10.2383
ffffff[a[cccooooooccc]a]ffff	chr8:25315659-25315948(-)$1	289	23	51	10.3538
gggggggccc[bbmmmmbbccc]ggggg	chr6:48036237-48036484(-)$1	247	191	219	8.6347
[ffffff"""bbnnnnnbb333ffffff	chr11:2154111-2154326(-)$1	215	126	154	12.7370
""ggggggg!!annnnna22gggggggf	chr11:2156528-2156770(-)$1	242	201	229	12.7114
============oooooo==========	chr17:55334358-55334565(+)$1	207	150	178	12.7113
ffff[ddddcccnnnnnccc]dddd]ff	chr2:232575088-232575358(+)$1	270	150	178	9.9338
]bbiiiiiiiii[allla]iiiiiiiii	chr19:1468758-1469053(-)$1	295	82	110	10.0705
[eeeee####bbmmmmbb333eeeee]c	chr10:91404790-91405047(-)$1	257	85	113	9.5003
geeeee"""cccooooooccc22eeeee	chr19:2270305-2270593(+)$1	288	220	248	10.8409
hhhhhhhh"""annnnna333hhhhhhh	chr17:34171533-34171919(+)$1	386	199	227	10.5509
ddffffff[cccooooooccc]ffffff	chr7:100136946-100137227(+)$1	281	109	137	9.6463
eeee[a[eeeeennnnneeeeea]eeee	chr8:145017846-145018089(-)$1	243	179	207	9.2956
===========rrrrrrrrr========	chr7:766211-766486(-)$1	275	0	28	9.9784

#otherMatches

#Seq PSSM
CCGAGAGGGACGUGUCGACCCCUCCGAC	chr11:2154680-2154892(-)$1	212	108	136	9.1467
UGUUGCUCAGCUGGGGGAUUUGGGGACG	chr15:67391093-67391391(+)$1	298	72	100	11.0904
CGUGGUCUUGGCAGCCGCAUUGGCCACG	chr11:63884821-63885062(-)$1	241	138	166	10.8464
CUGCUUGCCUCUGCGGGAGGUGGGCGCG	chr12:123464867-123465168(+)$1	301	241	269	8.6092
CCCUGCUCCUCUGCAAUGAAAAGCAAGC	chr17:80197779-80198016(+)$1	237	149	177	8.9609
UCUGCAGCCCGGCGCCACCAUCCUGCAG	chr11:2154126-2154330(-)$1	204	130	158	10.8750
CCGAGAGGGACGUGUCGACCCCUCCGAC	chr11:2154662-2154876(-)$1	214	92	120	9.1467
UCUGCAGCCCGGCGCCACCAUCCUGCAG	chr11:2154130-2154333(-)$1	203	133	161	10.8750
ACCUGGUCAGGCCCCUAGAGUGACCGGU	chr11:2156505-2156728(-)$1	223	159	187	12.7114
CAGUUCGUAACCGCACUGGUUGUGGCAG	chr11:126146201-126146444(+)$1	243	59	87	11.2946
CACAGCUGGCUCACUGGGAGAGGGUGGG	chr3:195622172-195622530(-)$1	358	59	87	11.9074
UGUUGUGGGACAAGGAGGUCCUGCAGCA	chr17:36760606-36760863(-)$1	257	190	218	12.5716
GUGUGGGGGCGAGGCCUGUAACCCCUAC	chr1:36788393-36788683(+)$1	290	13	41	11.9054
UGCGGGGGCUGCGCUgcggcccgcgggc	chr16:447154-447376(+)$1	222	96	124	8.5239
CCCGUGGUGCGAGUGAGUCGCUGCCGCU	chr6:24719983-24720189(-)$1	206	90	118	9.6217
CCUCCACGGAACCCCGUCCCGCUCAGGA	chr16:2029113-2029369(+)$1	256	147	175	9.2587
CGGGUGGGACCCCCGCAGGGAUCACCCG	chr21:47565373-47565653(-)$1	280	58	86	12.9812
CCGAGAGGGACGUGUCGACCCCUCCGAC	chr11:2154692-2154931(-)$1	239	147	175	9.1467
ggcggcgccguggcggaggagcaggagc	chr10:104503716-104503992(+)$1	276	57	85	8.3474
CACUGCAGGGGCCUGGGGGUGCUGAGCU	chr17:79913314-79913580(-)$1	266	67	95	8.9890
UGGCGCACUCCGACAGCCCGGCAGCGCC	chr19:2270512-2270768(+)$1	256	13	41	10.8409
ugcgcugcgggccgaggcgccguggcug	chr20:62371220-62371504(+)$1	284	86	114	8.4946
UGGGUGCGCAGAUGCUGCGUGAGCGUGG	chr19:59073428-59073678(+)$1	250	107	135	9.2064
UCUGCAGCCCGGCGCCACCAUCCUGCAG	chr11:2154133-2154338(-)$1	205	138	166	12.7370
CCGUGGCCAUGGGGUAGUCAAUGUUGGA	chr11:63884862-63885119(-)$1	257	83	111	11.0229
UUGCAGCAGCCCUGCCUGGAGGCUGCGG	chr16:88798214-88798471(+)$1	257	187	215	11.7689
AUAGUAGGUGGGGGUGAUCUGCUUGCUU	chr15:35271713-35271985(-)$1	272	128	156	13.7446
UCUGCAGCCCGGCGCCACCAUCCUGCAG	chr11:2154138-2154341(-)$1	203	141	169	10.8750
GGCCCCUCACCCCAAGGCGGGUGAGCUC	chr19:42752575-42752831(-)$1	256	135	163	8.6060
UCCUGGGUGAACUUGUCCAGUCACACCC	chr22:37904893-37905151(-)$1	258	188	216	9.0979
CACCUGCACCGGAACCCCCAUGGCACUG	chr14:24901491-24901781(+)$1	290	57	85	12.6750
CCAGGGUGGGGUGAGGAGGUUCCUGCUC	chr17:7491207-7491527(+)$1	320	171	199	9.9784
UUUGUGGUCUGGAAGGGCUGGACUGCGG	chr16:4744417-4744680(+)$1	263	216	244	13.8868
UUCCUCAGCUACGAGGAGGCGCUGAGGA	chr17:58469092-58469368(-)$1	276	95	123	13.2639
CCUGGCCUACGAGAGCGUCGUGGCCCAG	chr3:126722009-126722292(+)$1	283	201	229	9.4937
agcugcacaagcgccaggcgcagcuccu	chr7:766562-766860(-)$1	298	60	88	10.6184
UGCUUCUACAGGGCCCAGCGUGUGAGGC	chr6:33178889-33179179(+)$1	290	34	62	9.9266
CCCUCAGGCCACAGUCAGUGGGUGGAGG	chr14:24901148-24901446(+)$1	298	175	203	9.8221
GCUACAGAGGUCGUGGGGGCAGAggugg	chr17:34171479-34171733(+)$1	254	34	62	10.6848
ggcgggcgggagcgcgggucaggccggc	chr5:137688272-137688618(+)$1	346	177	205	9.8892
UCAGCUCCACUCGGGUGGAGUGGAAGUG	chr17:46137115-46137394(+)$1	279	59	87	10.2383
GGGACAGAGUGCGUGCGUGUGGUGUGUC	chr8:25315659-25315948(-)$1	289	23	51	10.3538
GCUGGGUUUGUGCGUGAGCCGGCACCCG	chr6:48036237-48036484(-)$1	247	191	219	8.6347
UCUGCAGCCCGGCGCCACCAUCCUGCAG	chr11:2154111-2154326(-)$1	215	126	154	12.7370
ACCUGGUCAGGCCCCUAGAGUGACCGGU	chr11:2156528-2156770(-)$1	242	201	229	12.7114
GGAGGGGGGGACGCCUGGGUCCCCCCCU	chr17:55334358-55334565(+)$1	207	150	178	12.7113
AGCCGCUCGCCGGACAGCGGCCGAGGGG	chr2:232575088-232575358(+)$1	270	150	178	9.9338
GGCGCUUUCUGGGCAGGGGCUGGGAGGC	chr19:1468758-1469053(-)$1	295	82	110	10.0705
GGCCUGGGGAUCAGGGGAAGGCGGGCGG	chr10:91404790-91405047(-)$1	257	85	113	9.5003
UGGCGCACUCCGACAGCCCGGCAGCGCC	chr19:2270305-2270593(+)$1	288	220	248	10.8409
guggcuauggaggagaucgagguggcua	chr17:34171533-34171919(+)$1	386	199	227	10.5509
gugccgucgggugcgggagcugggUGGC	chr7:100136946-100137227(+)$1	281	109	137	9.6463
GGGCAGAGGGGCCGCCUGCCUCCCGCCC	chr8:145017846-145018089(-)$1	243	179	207	9.2956
CUUGCUGUCGGCCUCCAGCCCCGGCAGC	chr7:766211-766486(-)$1	275	0	28	9.9784

#DB
(.(((.(((.((...)).)))))).)))	chr11:2154680-2154892(-)$1	1	108	136	9.1467
((((.(((((.(.....).)))))))))	chr15:67391093-67391391(+)$1	1	72	100	11.0904
(((((((...((....))...)))))))	chr11:63884821-63885062(-)$1	1	138	166	10.8464
..((((((((((...)))))))))))))	chr12:123464867-123465168(+)$1	1	241	269	8.6092
((.((((..((......))..)))).).	chr17:80197779-80198016(+)$1	1	149	177	8.9609
..(((((...((.....))...))))))	chr11:2154126-2154330(-)$1	1	130	158	10.8750
(.(((.(((.((...)).)))))).)))	chr11:2154662-2154876(-)$1	1	92	120	9.1467
..(((((...((.....))...))))))	chr11:2154130-2154333(-)$1	1	133	161	10.8750
..(((((((..(.....)..))))))))	chr11:2156505-2156728(-)$1	1	159	187	12.7114
(....(((((((.....)))))))))))	chr11:126146201-126146444(+)$1	1	59	87	11.2946
(.(.(((..(((.....)))..))).).	chr3:195622172-195622530(-)$1	1	59	87	11.9074
(((((((((((......)))))))))))	chr17:36760606-36760863(-)$1	1	190	218	12.5716
(.(((((((..(......)..)))))))	chr1:36788393-36788683(+)$1	1	13	41	11.9054
)).))))))))).)).))))))))))))	chr16:447154-447376(+)$1	1	96	124	8.5239
.(.(((((((((.....)))).))))).	chr6:24719983-24720189(-)$1	1	90	118	9.6217
(((...(((.((...)).)))...))))	chr16:2029113-2029369(+)$1	1	147	175	9.2587
(((((((..(((.....))).)))))))	chr21:47565373-47565653(-)$1	1	58	86	12.9812
(.(((.(((.((...)).)))))).)))	chr11:2154692-2154931(-)$1	1	147	175	9.1467
(((((((((.....((((((((((((((	chr10:104503716-104503992(+)$1	1	57	85	8.3474
(....(((.(.((...)).).))).)))	chr17:79913314-79913580(-)$1	1	67	95	8.9890
((((((...(((......)))..)))))	chr19:2270512-2270768(+)$1	1	13	41	10.8409
((((((((((((....)).)))))))..	chr20:62371220-62371504(+)$1	1	86	114	8.4946
(((.(((((..(((...)))..))))).	chr19:59073428-59073678(+)$1	1	107	135	9.2064
.((((((...((.....))...))))))	chr11:2154133-2154338(-)$1	1	138	166	12.7370
(((...((((((.....)))....))).	chr11:63884862-63885119(-)$1	1	83	111	11.0229
(((((((..((......))..)))))))	chr16:88798214-88798471(+)$1	1	187	215	11.7689
(.((((((((((.....)))))))))))	chr15:35271713-35271985(-)$1	1	128	156	13.7446
..(((((...((.....))...))))))	chr11:2154138-2154341(-)$1	1	141	169	10.8750
(....(((((((......)))))))...	chr19:42752575-42752831(-)$1	1	135	163	8.6060
))))(((((.(((.....)))..)))))	chr22:37904893-37905151(-)$1	1	188	216	9.0979
(((.(((...((.....))...)))..)	chr14:24901491-24901781(+)$1	1	57	85	12.6750
(((((((((((.........))))))))	chr17:7491207-7491527(+)$1	1	171	199	9.9784
((((((((((((.....)))))))))))	chr16:4744417-4744680(+)$1	1	216	244	13.8868
(((((((((..(.....)..))))))))	chr17:58469092-58469368(-)$1	1	95	123	13.2639
(((((.((((((.....)))))).))))	chr3:126722009-126722292(+)$1	1	201	229	9.4937
((((((....((.....)))))))).))	chr7:766562-766860(-)$1	1	60	88	10.6184
((((((.(((.(......).))))))))	chr6:33178889-33179179(+)$1	1	34	62	9.9266
(((((.(.((((.....)))).).))))	chr14:24901148-24901446(+)$1	1	175	203	9.8221
.((((....(((.....)))....))))	chr17:34171479-34171733(+)$1	1	34	62	10.6848
(((.(((..((.(...).))..))).))	chr5:137688272-137688618(+)$1	1	177	205	9.8892
.((..(((((((.....)))))))..))	chr17:46137115-46137394(+)$1	1	59	87	10.2383
((((((.(.(((......))).).))))	chr8:25315659-25315948(-)$1	1	23	51	10.3538
((((((((((.((....))))).)))))	chr6:48036237-48036484(-)$1	1	191	219	8.6347
.((((((...((.....))...))))))	chr11:2154111-2154326(-)$1	1	126	154	12.7370
..(((((((..(.....)..))))))))	chr11:2156528-2156770(-)$1	1	201	229	12.7114
((((((((((((......))))))))))	chr17:55334358-55334565(+)$1	1	150	178	12.7113
((((.(((((((.....))).)))).))	chr2:232575088-232575358(+)$1	1	150	178	9.9338
.))(((((((((.(...).)))))))))	chr19:1468758-1469053(-)$1	1	82	110	10.0705
.(((((....((....))...))))).)	chr10:91404790-91405047(-)$1	1	85	113	9.5003
((((((...(((......)))..)))))	chr19:2270305-2270593(+)$1	1	220	248	10.8409
((((((((...(.....)...)))))))	chr17:34171533-34171919(+)$1	1	199	227	10.5509
((((((((.(((......))).))))))	chr7:100136946-100137227(+)$1	1	109	137	9.6463
((((.(.(((((.....)))))).))))	chr8:145017846-145018089(-)$1	1	179	207	9.2956
(((((((((((.........))))))))	chr7:766211-766486(-)$1	1	0	28	9.9784

#PSSM
f : 0.12	c : 0.09	i : 0.09	g : 0.09	d : 0.09	= : 0.09	[ : 0.09	: : 0.07	e : 0.07	" : 0.03	h : 0.03	b : 0.01	a : 0.01	F : 0.01	! : 0.01	] : 0.01	
f : 0.14	e : 0.12	[ : 0.11	i : 0.09	= : 0.09	d : 0.09	: : 0.07	g : 0.05	# : 0.05	a : 0.03	" : 0.03	b : 0.03	c : 0.01	h : 0.01	
e : 0.18	f : 0.14	= : 0.12	g : 0.11	i : 0.09	c : 0.07	d : 0.07	# : 0.05	[ : 0.03	b : 0.03	a : 0.01	] : 0.01	h : 0.01	
e : 0.20	g : 0.12	= : 0.12	i : 0.11	f : 0.11	[ : 0.07	c : 0.05	d : 0.05	# : 0.05	" : 0.03	! : 0.01	h : 0.01	
e : 0.22	g : 0.12	= : 0.12	c : 0.11	i : 0.09	f : 0.09	[ : 0.05	# : 0.05	d : 0.03	" : 0.03	! : 0.01	h : 0.01	
e : 0.20	g : 0.18	= : 0.12	[ : 0.09	i : 0.09	f : 0.09	c : 0.07	d : 0.03	" : 0.03	# : 0.01	h : 0.01	a : 0.01	
g : 0.18	c : 0.16	e : 0.12	= : 0.12	i : 0.09	f : 0.07	# : 0.05	[ : 0.05	d : 0.03	" : 0.03	a : 0.01	h : 0.01	
" : 0.16	c : 0.14	= : 0.12	g : 0.12	e : 0.09	! : 0.09	i : 0.07	# : 0.05	f : 0.03	[ : 0.01	a : 0.01	d : 0.01	h : 0.01	
" : 0.18	c : 0.12	= : 0.12	g : 0.12	! : 0.09	e : 0.07	i : 0.07	d : 0.05	[ : 0.05	# : 0.05	f : 0.01	
c : 0.20	" : 0.14	= : 0.12	[ : 0.09	! : 0.09	g : 0.07	b : 0.05	e : 0.03	i : 0.03	d : 0.03	# : 0.03	$ : 0.01	a : 0.01	f : 0.01	
b : 0.31	c : 0.18	= : 0.12	! : 0.09	[ : 0.07	g : 0.05	i : 0.03	d : 0.03	$ : 0.01	f : 0.01	" : 0.01	e : 0.01	
b : 0.29	c : 0.20	a : 0.12	= : 0.07	o : 0.05	g : 0.05	i : 0.03	d : 0.03	r : 0.03	$ : 0.01	f : 0.01	[ : 0.01	e : 0.01	
n : 0.46	o : 0.20	l : 0.09	m : 0.05	b : 0.03	c : 0.03	r : 0.03	] : 0.01	$ : 0.01	a : 0.01	[ : 0.01	
n : 0.48	o : 0.20	l : 0.12	m : 0.07	a : 0.03	r : 0.03	$ : 0.01	c : 0.01	
n : 0.48	o : 0.20	l : 0.16	m : 0.07	r : 0.03	a : 0.01	= : 0.01	
n : 0.48	o : 0.20	b : 0.07	m : 0.07	l : 0.07	= : 0.03	r : 0.03	] : 0.01	
n : 0.48	o : 0.20	b : 0.14	= : 0.05	l : 0.03	r : 0.03	a : 0.01	m : 0.01	
b : 0.25	o : 0.14	a : 0.11	= : 0.11	c : 0.11	] : 0.09	g : 0.03	d : 0.03	r : 0.03	n : 0.01	f : 0.01	e : 0.01	
c : 0.27	b : 0.20	= : 0.12	] : 0.07	3 : 0.05	2 : 0.05	g : 0.05	a : 0.03	d : 0.03	r : 0.03	f : 0.01	e : 0.01	
c : 0.29	3 : 0.16	= : 0.12	2 : 0.11	g : 0.07	e : 0.03	d : 0.03	r : 0.03	f : 0.03	a : 0.01	] : 0.01	b : 0.01	i : 0.01	
c : 0.20	3 : 0.16	= : 0.16	2 : 0.11	g : 0.11	] : 0.05	e : 0.03	d : 0.03	4 : 0.03	i : 0.03	f : 0.03	
g : 0.16	= : 0.16	3 : 0.12	c : 0.11	2 : 0.11	] : 0.07	e : 0.05	i : 0.05	d : 0.03	4 : 0.03	f : 0.03	h : 0.01	
g : 0.16	= : 0.16	c : 0.14	e : 0.12	f : 0.09	2 : 0.05	i : 0.05	a : 0.05	d : 0.03	4 : 0.03	3 : 0.01	] : 0.01	h : 0.01	
e : 0.20	g : 0.18	= : 0.16	c : 0.12	f : 0.07	] : 0.07	i : 0.05	d : 0.03	4 : 0.03	3 : 0.01	h : 0.01	
e : 0.25	= : 0.16	g : 0.14	f : 0.11	] : 0.07	i : 0.07	c : 0.07	d : 0.05	2 : 0.01	h : 0.01	
e : 0.25	= : 0.14	g : 0.12	c : 0.09	] : 0.09	f : 0.09	i : 0.07	2 : 0.03	F : 0.01	6 : 0.01	d : 0.01	h : 0.01	
e : 0.24	= : 0.14	c : 0.11	g : 0.11	f : 0.11	i : 0.07	a : 0.03	b : 0.03	F : 0.01	3 : 0.01	6 : 0.01	2 : 0.01	d : 0.01	] : 0.01	h : 0.01	
f : 0.18	e : 0.14	= : 0.12	c : 0.11	i : 0.07	g : 0.07	G : 0.05	] : 0.03	2 : 0.03	3 : 0.03	b : 0.03	F : 0.01	6 : 0.01	d : 0.01	h : 0.01	

#score	570.6482974611631
#seq	54
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_UTR_m1_run1.txt

#BEAR
ee[dddd"""ffffffooooooffffffdddd]eeeee]	chr10:45485031-45485300(+)$1	269	125	164	14.1160
iiii!!iiiiiiiiirrrrrrrrriiiiiiiii333iii	chr2:106810416-106810714(-)$1	298	126	165	13.9203
ddd$$$$$dddd[cccooooooccc]ddddddddcccmm	chr9:32552275-32552566(-)$1	291	1	40	12.8851
eea[ccc"""ffffffooooooffffffccc]a22eeee	chr6:31930461-31930714(+)$1	253	32	71	14.8002
eeee!!==========lll==========]eeeee333c	chr11:62603289-62603534(-)$1	245	38	77	12.7602
a[eeeee[agggggggooooooggggggg]a]eeeee]a	chr17:77078044-77078249(+)$1	205	100	139	15.0408
hhhhh[dddd!!ddddoooooodddd22dddd]hhhhhh	chr11:67196426-67196726(+)$1	300	105	144	12.4565
dddd####dddd[cccooooooccc22dddd333dddd:	chr18:60251722-60251947(+)$1	225	41	80	14.7869
iii!!bb####ccc[aooooooa]ccc4444bbiiiiii	chr8:141710847-141711133(-)$1	286	43	82	15.6758
ffffff[ffffffcccooooooccc]ffffffffffffa	chr17:79567212-79567475(-)$1	263	181	220	13.9476
[bb[a[a[hhhhhhhhoooooohhhhhhhh]a]a]bb==	chr22:39898314-39898590(+)$1	276	162	201	12.6110
b[ccc!!bb[ffffffooooooffffff]bb22ccc]bb	chr22:19466383-19466733(-)$1	350	39	78	13.2885
!!eeeee####bb[cccnnnnnccc333bb4444eeeee	chr16:87393756-87394037(-)$1	281	170	209	13.2253
a[ffffffeeeeecccooooooccc]eeeee22ffffff	chr16:29845286-29845578(+)$1	292	173	212	14.5004
###ggggggg[bb[bboooooobb]bb22gggggggccc	chr19:4722376-4722617(-)$1	241	90	129	14.1574
cc!!ccc"""eeeee[ccclllccceeeeeccc22ccc2	chr6:35824891-35825133(-)$1	242	6	45	11.9707
ggggggg[a"""ddddnnnnndddd]a]ggggggg333d	chr6:136610705-136610972(-)$1	267	73	112	12.8843
cceeeeeeeeee!!bboooooobb22eeeee22eeeee2	chr12:58176953-58177252(+)$1	299	245	284	13.5657
ffdddd[a[bb!!cccooooooccc22bbadddd22fff	chr17:74046364-74046609(-)$1	245	78	117	14.3379
!cccffffff!!ddddoooooodddd22ffffff]ccc4	chr21:45213086-45213332(+)$1	246	105	144	13.7628
ffffff[eeeee!!bboooooobb22eeeee]ffffff:	chr11:71939182-71939428(+)$1	246	129	168	12.6856
"""ccceeeee!!cccooooooccc22eeeee333ccc]	chr3:141105670-141105923(+)$1	253	167	206	16.7805
ddddddd####eeeeeooooooeeeee333dddd]dddd	chr6:31936538-31936789(+)$1	251	59	98	13.9480
[bbeeeeeddddddddoooooodddd]dddd4444eeee	chr16:27487629-27487897(-)$1	268	159	198	12.9985
ggggggg####eeeeeooooooeeeeeggggggg:gggg	chr6:135818558-135818851(-)$1	293	65	104	15.1135
ddccc[dddd[ccccccnnnnnccc4444ccc]ddddcc	chr11:721886-722126(+)$1	240	118	157	12.0561
iiiiiiii!!bb!!cccnnnnnccc]bb22iiiiiiiii	chr19:36104575-36104838(+)$1	263	138	177	13.5568
===========bbcccmmmmccc4444bb]=========	chr16:83986846-83987120(+)$1	274	229	268	12.2929
bb[ffffff####cccooooooccc22ffffff333bb]	chr10:81111246-81111509(+)$1	263	22	61	15.3716
ggggg[gggggggcccooooooccc]ggggggg]ggggg	chr11:61100180-61100488(-)$1	308	259	298	17.2962
eebb"""gggggggcccnnnnnccc]ggggggg333bb]	chr20:60813516-60813797(+)$1	281	230	269	13.6944
ffffff!!bb[eeeeeooooooeeeee]bb333ffffff	chr11:67201413-67201675(+)$1	262	199	238	14.0451
[dddd"""a[ccca[bboooooobb]a]ccc]adddd22	chr7:44836251-44836535(+)$1	284	115	154	13.5688
gg[==========xxxxxxxxxxxxxxx==========]	chr12:3128217-3128474(+)$1	257	126	165	12.1553
gggg"""a[eeeeesssssssssseeeee]a333ggggg	chr5:179032783-179033071(+)$1	288	187	226	11.0374
$$$==========rrrrrrrrr==========hhhhhhh	chr19:19612121-19612372(+)$1	251	190	229	11.5484
&==============ppppppp==============iii	chr11:1008010-1008293(+)$1	283	132	171	11.3172
dddggggggg[a[ddddllldddda]ggggggg333ddd	chr12:2975421-2975689(-)$1	268	42	81	11.8703
cc[dddd"""ddddcccnnnnnccc]dddddddd]ccc]	chr11:124492989-124493301(+)$1	312	229	268	12.4838
fff!!gggggggeeeeellleeeee]ggggggg4444ff	chr10:79565263-79565533(-)$1	270	187	226	11.3830
[dddd$$$$$ccc!!aooooooa333cccdddd]bb444	chr12:56709455-56709739(-)$1	284	119	158	14.3949
hhhhhhhh[a[a!!bboooooobb22a]a]hhhhhhhhb	chr1:1590231-1590526(-)$1	295	82	121	12.8045
cc[bb!!ccc"""cccooooooccc333ccc4444bbcc	chr6:52858817-52859086(-)$1	269	64	103	16.7963
==========[a[ddddnnnnndddd]a]==========	chr20:61438795-61439047(+)$1	252	34	73	13.9800
iiii"""bb[ffffffooooooffffff22bb22iiiii	chr11:10830100-10830362(-)$1	262	159	198	14.3379
"""ccc####ddddbboooooobb]dddd22ccc22eee	chr2:150444029-150444282(-)$1	253	164	203	14.2523
a!!ccc[ccc[ccc[aooooooacccccc]ccc22a]a]	chr16:4873681-4873923(-)$1	242	7	46	16.3620
d"""ccc!!gggggggooooooggggggg4444ccc333	chr20:48744360-48744622(-)$1	262	209	248	16.1892
b[bb[ggggggg[cccooooooccc22gggggggbbbb]	chr6:44225022-44225238(-)$1	216	121	160	15.6102
eeeee"""bb[eeeeeooooooeeeee]bb333eeeee]	chr1:1203130-1203342(-)$1	212	72	111	14.8901
ggggggbb[ccc!!bboooooobb22ccc4444bb]ggg	chr22:19841823-19842073(-)$1	250	61	100	14.7891

#otherMatches

#Seq PSSM
CACGAGUCUGGGGGUAAGUACCUGCCCCACUUCUGGAUC	chr10:45485031-45485300(+)$1	269	125	164	14.1160
CUGCCAGCUGGGGAGCCCCAUUCAUUccccggcgccgcg	chr2:106810416-106810714(-)$1	298	126	165	13.9203
GAGUUUCUGGGUGCUGAAGAAAUAGGGCCUUUCCGCCUG	chr9:32552275-32552566(-)$1	291	1	40	12.8851
CAUGCUGUACAGUGGCUCAGAUGUUAUUCGGGACCUGGA	chr6:31930461-31930714(+)$1	253	32	71	14.8002
AUGUGUGGAUUCUGGGAUUCUCAGAGUCUGGCAUGACAA	chr11:62603289-62603534(-)$1	245	38	77	12.7602
GGUGGGUGGUGGCUUUCGUCCAAGGGCCAGCGGCCCAGU	chr17:77078044-77078249(+)$1	205	100	139	15.0408
GGGGAAGGGGAACUGGGGAGCACUGGAGCCUUGUCCUCA	chr11:67196426-67196726(+)$1	300	105	144	12.4565
GGGACGAGGACAGUGCGAGCAAGCAGAUGUUAUUUCCUA	chr18:60251722-60251947(+)$1	225	41	80	14.7869
GGCAAGUGUUGCCAACCCAUCUGAUGGAAGAGCGUCUAA	chr8:141710847-141711133(-)$1	286	43	82	15.6758
GGAGAGUGGCCGGGCUGUGUCGGGUACUGGCUCUCUCCG	chr17:79567212-79567475(-)$1	263	181	220	13.9476
UGGGCGGCGGGGAGGUUGCAGCGCCUCCUCUCAGGCUGC	chr22:39898314-39898590(+)$1	276	162	201	12.6110
GCGGCAGCGGCGGCUGGGAGAGCGGUCGGCGGGGUUUCU	chr22:19466383-19466733(-)$1	350	39	78	13.2885
ACUUUGUACCAGAAGCAGACAGUGCACAUCAAUGACAAA	chr16:87393756-87394037(-)$1	281	170	209	13.2253
UGAGGAAAGCCUCCUGUAGCCCCAGAGAGGCGCUUUCCU	chr16:29845286-29845578(+)$1	292	173	212	14.5004
UCUGGACCCUUUAGAAGGUCAGUUGUGCUGGGGUUUGGC	chr19:4722376-4722617(-)$1	241	90	129	14.1574
GAUAUUCAAACAAGGCAAUAUCGUUCCUUGGAAGUUCUA	chr6:35824891-35825133(-)$1	242	6	45	11.9707
UGUGGUUGCAACGGAGAUAAAUUCCCGGAACCGCGAUUC	chr6:136610705-136610972(-)$1	267	73	112	12.8843
CUUAAAUGACAACCUUGGCCUUGACUUUGUCUUAUUUGA	chr12:58176953-58177252(+)$1	299	245	284	13.5657
GGGAGGAGCUCAAGCCAGAUCAGGUAGGACCCUCAGCCG	chr17:74046364-74046609(-)$1	245	78	117	14.3379
UUCUCCAGAGCACCUGUUCCUUCAGGCCUUCUGGCAGAC	chr21:45213086-45213332(+)$1	246	105	144	13.7628
CCCUGACCCCUGACCUUGAUCCAGCCUAGGGCUUGGGGA	chr11:71939182-71939428(+)$1	246	129	168	12.6856
CUUGCUUCUGCGAGCCUAAGAUGGCAGGCAGGAUUAGCC	chr3:141105670-141105923(+)$1	253	167	206	16.7805
GGGGGGCUAGGGGACAGCAGUGUGUCCAAUGCCCACCCU	chr6:31936538-31936789(+)$1	251	59	98	13.9480
UGUGGGCCCUUCCGAGGCCAGGCUCGUGAGGUGCUGGCC	chr16:27487629-27487897(-)$1	268	159	198	12.9985
GGAGUUGAUUUGCACUGCUCCGGGUGUCGGCUCCGGCGG	chr6:135818558-135818851(-)$1	293	65	104	15.1135
CCCCAGCCCUGCCCCACUGUCUGUGCUGAGGGGAGGGUG	chr11:721886-722126(+)$1	240	118	157	12.0561
GGGAGGGGGCACAGGUGAGGCCCAUAGUAACUCCUCUUU	chr19:36104575-36104838(+)$1	263	138	177	13.5568
AGGCGGGGGUCCCGGGUGGUCCUGAGUGGAGGCCCUCGC	chr16:83986846-83987120(+)$1	274	229	268	12.2929
CACAGGCGGGAAGUCCAUCUACGGAAGCCGCUUUCCUGA	chr10:81111246-81111509(+)$1	263	22	61	15.3716
ACCUCGAAAGAGUCGUCCCUGUACGCGCUUUUUGGGGGU	chr11:61100180-61100488(-)$1	308	259	298	17.2962
ggggagggcgggccgggCAGGACCCGGGUCCGCAGGCCG	chr20:60813516-60813797(+)$1	281	230	269	13.6944
ACCGGGGGGCAAGCAGGGUGAGCUGUUAGUGGGUUUGGU	chr11:67201413-67201675(+)$1	262	199	238	14.0451
AGCCCUUGGGCCGCGUCUCCUUUGAGGUCGGGCGGGCGG	chr7:44836251-44836535(+)$1	284	115	154	13.5688
GGCGCUGCGUGGCCCCCUUUCUAUCGCAGCCAUGUGGCU	chr12:3128217-3128474(+)$1	257	126	165	12.1553
ACUGCCCGUGUGCUCGUACGUUUAAGUAUCCCAACAGUC	chr5:179032783-179033071(+)$1	288	187	226	11.0374
AUUGUUAACUGCACGUCUAAAUUGCAGUUAAUGGUGGUG	chr19:19612121-19612372(+)$1	251	190	229	11.5484
CCGCCUGUGCGCCCCGGGCCAAGGGGUGUGUGGGCGCCU	chr11:1008010-1008293(+)$1	283	132	171	11.3172
UCCGGGAGACGUCUGCCAAUGGCAAGGUCUCCUUCUGGA	chr12:2975421-2975689(-)$1	268	42	81	11.8703
UAUUAAUACAGUGUUGGCUUUUCCGUAUACGUuacuacu	chr11:124492989-124493301(+)$1	312	229	268	12.4838
CUUAAACAAAAGAGAGUCUUACUUUGCUUUUGUGCGCAA	chr10:79565263-79565533(-)$1	270	187	226	11.3830
GGCCCUGGGAGCAGAGGUGGGACGGAUGCGGGCGGCGAG	chr12:56709455-56709739(-)$1	284	119	158	14.3949
CGCCGGUUGCUGUUUCUUCUCUGGCUCCGGGACcggcgg	chr1:1590231-1590526(-)$1	295	82	121	12.8045
UCCACUAUCCCAACGGAAGAGGCCGGAUGGAGUCCGUGA	chr6:52858817-52859086(-)$1	269	64	103	16.7963
GUUGGGACUCACUUGGGGGUCUCCCAUGGGGGUCCUAAU	chr20:61438795-61439047(+)$1	252	34	73	13.9800
CCGUCCCUGGUCGCUUCUUCUCGAGUGGUACAAAAUGGC	chr11:10830100-10830362(-)$1	262	159	198	14.3379
CCUCGGUAUUGCCCGUAUUUUCACUGGGUCCCUGUCGUU	chr2:150444029-150444282(-)$1	253	164	203	14.2523
CUCUAUAGGAUCUCACCAUCCCGGAGUCUAGUACCGUGA	chr16:4873681-4873923(-)$1	242	7	46	16.3620
UCCUUGCCCUCUGGGAACAGUCUCUCAGGUCAUGCauuu	chr20:48744360-48744622(-)$1	262	209	248	16.1892
CGAGCUCACGUGACCGAGCCCCCGGGCCACGUGACUGCC	chr6:44225022-44225238(-)$1	216	121	160	15.6102
GAGCCCCUCCCUUCGAAUAUUCUCGAGUGGUAAGGCUCC	chr1:1203130-1203342(-)$1	212	72	111	14.8901
GCUACGGAUCCCAGGACCCUCUUCGCGGGCGAUUCGCGU	chr22:19841823-19842073(-)$1	250	61	100	14.7891

#DB
((.((((...((((((......)))))))))).))))).	chr10:45485031-45485300(+)$1	1	125	164	14.1160
((((..(((((((((.........)))))))))...)))	chr2:106810416-106810714(-)$1	1	126	165	13.9203
(((.....((((.(((......))).))))))))(((..	chr9:32552275-32552566(-)$1	1	1	40	12.8851
(((.(((...((((((......))))))))).)..))))	chr6:31930461-31930714(+)$1	1	32	71	14.8002
((((..((((((((((...)))))))))).)))))...)	chr11:62603289-62603534(-)$1	1	38	77	12.7602
(.(((((.((((((((......))))))).).))))).)	chr17:77078044-77078249(+)$1	1	100	139	15.0408
(((((.((((..((((......))))..)))).))))))	chr11:67196426-67196726(+)$1	1	105	144	12.4565
((((....((((.(((......)))..))))...)))).	chr18:60251722-60251947(+)$1	1	41	80	14.7869
(((..((....(((.(......).)))....))))))))	chr8:141710847-141711133(-)$1	1	43	82	15.6758
((((((.(((((((((......))).))))))))))))(	chr17:79567212-79567475(-)$1	1	181	220	13.9476
.((.(.(.((((((((......)))))))).).).))))	chr22:39898314-39898590(+)$1	1	162	201	12.6110
(.(((..((.((((((......)))))).))..))).))	chr22:19466383-19466733(-)$1	1	39	78	13.2885
..(((((....((.(((.....)))...))....)))))	chr16:87393756-87394037(-)$1	1	170	209	13.2253
(.((((((((((((((......))).)))))..))))))	chr16:29845286-29845578(+)$1	1	173	212	14.5004
...(((((((.((.((......)).))..))))))))))	chr19:4722376-4722617(-)$1	1	90	129	14.1574
((..(((...(((((.(((...)))))))))))..))).	chr6:35824891-35825133(-)$1	1	6	45	11.9707
(((((((.(...((((.....)))).).)))))))...)	chr6:136610705-136610972(-)$1	1	73	112	12.8843
((((((((((((..((......))..)))))..))))).	chr12:58176953-58177252(+)$1	1	245	284	13.5657
((((((.(.((..(((......)))..)))))))..)))	chr17:74046364-74046609(-)$1	1	78	117	14.3379
.(((((((((..((((......))))..)))))).))).	chr21:45213086-45213332(+)$1	1	105	144	13.7628
((((((.(((((..((......))..))))).)))))).	chr11:71939182-71939428(+)$1	1	129	168	12.6856
...((((((((..(((......)))..)))))...))).	chr3:141105670-141105923(+)$1	1	167	206	16.7805
(((((((....(((((......)))))...)))).))))	chr6:31936538-31936789(+)$1	1	59	98	13.9480
.(((((((((((((((......)))).))))....))))	chr16:27487629-27487897(-)$1	1	159	198	12.9985
(((((((....(((((......)))))))))))).((((	chr6:135818558-135818851(-)$1	1	65	104	15.1135
(((((.((((.((((((.....)))....))).))))))	chr11:721886-722126(+)$1	1	118	157	12.0561
((((((((..((..(((.....))).))..)))))))))	chr19:36104575-36104838(+)$1	1	138	177	13.5568
((((((((((((((((....)))....)).)))))))))	chr16:83986846-83987120(+)$1	1	229	268	12.2929
((.((((((....(((......)))..))))))...)).	chr10:81111246-81111509(+)$1	1	22	61	15.3716
(((((.((((((((((......))).))))))).)))))	chr11:61100180-61100488(-)$1	1	259	298	17.2962
((((...((((((((((.....))).)))))))...)).	chr20:60813516-60813797(+)$1	1	230	269	13.6944
((((((..((.(((((......))))).))...))))))	chr11:67201413-67201675(+)$1	1	199	238	14.0451
.((((...(.((((.((......)).).))).)))))..	chr7:44836251-44836535(+)$1	1	115	154	13.5688
((.((((((((((...............)))))))))).	chr12:3128217-3128474(+)$1	1	126	165	12.1553
((((...(.(((((..........))))).)...)))))	chr5:179032783-179033071(+)$1	1	187	226	11.0374
...((((((((((.........)))))))))))))))))	chr19:19612121-19612372(+)$1	1	190	229	11.5484
.((((((((((((((.......)))))))))))))))))	chr11:1008010-1008293(+)$1	1	132	171	11.3172
((((((((((.(.((((...))))).)))))))...)))	chr12:2975421-2975689(-)$1	1	42	81	11.8703
((.((((...(((((((.....))).)))))))).))).	chr11:124492989-124493301(+)$1	1	229	268	12.4838
(((..((((((((((((...))))).)))))))....))	chr10:79565263-79565533(-)$1	1	187	226	11.3830
.((((.....(((..(......)...))))))).))...	chr12:56709455-56709739(-)$1	1	119	158	14.3949
((((((((.(.(..((......))..).).))))))))(	chr1:1590231-1590526(-)$1	1	82	121	12.8045
((.((..(((...(((......)))...)))....))))	chr6:52858817-52859086(-)$1	1	64	103	16.7963
((((((((((.(.((((.....)))).).))))))))))	chr20:61438795-61439047(+)$1	1	34	73	13.9800
((((...((.((((((......))))))..))..)))))	chr11:10830100-10830362(-)$1	1	159	198	14.3379
...(((....((((((......)).))))..)))..)))	chr2:150444029-150444282(-)$1	1	164	203	14.2523
(..(((.(((.(((.(......))))))).)))..).).	chr16:4873681-4873923(-)$1	1	7	46	16.3620
(...(((..(((((((......)))))))....)))...	chr20:48744360-48744622(-)$1	1	209	248	16.1892
(.((.(((((((.(((......)))..))))))))))).	chr6:44225022-44225238(-)$1	1	121	160	15.6102
(((((...((.(((((......))))).))...))))).	chr1:1203130-1203342(-)$1	1	72	111	14.8901
((((((((.(((..((......))..)))....)).)))	chr22:19841823-19842073(-)$1	1	61	100	14.7891

#PSSM
d : 0.11	g : 0.11	e : 0.09	f : 0.09	i : 0.07	[ : 0.07	c : 0.07	a : 0.05	b : 0.05	h : 0.03	! : 0.03	" : 0.03	= : 0.03	# : 0.01	$ : 0.01	& : 0.01	
d : 0.13	g : 0.11	e : 0.09	f : 0.09	c : 0.09	i : 0.07	[ : 0.07	b : 0.05	" : 0.05	= : 0.05	h : 0.03	! : 0.03	# : 0.01	$ : 0.01	
d : 0.13	[ : 0.09	e : 0.09	f : 0.09	g : 0.09	i : 0.07	b : 0.07	c : 0.05	" : 0.05	= : 0.05	h : 0.03	! : 0.03	a : 0.01	# : 0.01	$ : 0.01	
d : 0.13	g : 0.13	e : 0.11	c : 0.11	f : 0.09	= : 0.09	i : 0.05	! : 0.05	b : 0.05	[ : 0.03	h : 0.03	$ : 0.01	" : 0.01	
c : 0.15	d : 0.11	f : 0.11	g : 0.11	e : 0.09	= : 0.09	! : 0.07	" : 0.05	h : 0.03	$ : 0.01	# : 0.01	a : 0.01	i : 0.01	b : 0.01	[ : 0.01	
g : 0.13	c : 0.11	f : 0.11	= : 0.09	" : 0.09	d : 0.07	! : 0.07	e : 0.07	[ : 0.07	$ : 0.03	# : 0.01	b : 0.01	i : 0.01	h : 0.01	
g : 0.13	= : 0.11	d : 0.09	e : 0.09	" : 0.09	[ : 0.07	c : 0.05	! : 0.05	f : 0.05	i : 0.03	$ : 0.03	# : 0.03	b : 0.03	a : 0.01	h : 0.01	
" : 0.11	= : 0.11	# : 0.11	g : 0.11	f : 0.07	e : 0.07	[ : 0.05	b : 0.05	i : 0.03	$ : 0.03	d : 0.03	a : 0.03	! : 0.03	c : 0.03	h : 0.01	
= : 0.11	g : 0.11	d : 0.09	# : 0.09	" : 0.07	b : 0.07	e : 0.07	[ : 0.07	a : 0.05	f : 0.05	! : 0.03	c : 0.03	i : 0.01	h : 0.01	$ : 0.01	
g : 0.15	= : 0.11	# : 0.11	" : 0.09	d : 0.09	e : 0.09	[ : 0.05	b : 0.05	c : 0.05	f : 0.03	i : 0.01	h : 0.01	! : 0.01	$ : 0.01	a : 0.01	
[ : 0.15	g : 0.11	e : 0.11	f : 0.09	d : 0.09	= : 0.09	# : 0.09	c : 0.05	! : 0.03	" : 0.03	b : 0.03	i : 0.01	h : 0.01	
e : 0.17	g : 0.11	c : 0.11	f : 0.09	d : 0.09	= : 0.07	! : 0.07	b : 0.07	a : 0.05	" : 0.03	i : 0.01	h : 0.01	# : 0.01	
e : 0.15	! : 0.13	d : 0.11	f : 0.09	[ : 0.09	c : 0.09	= : 0.07	g : 0.07	b : 0.05	i : 0.01	h : 0.01	# : 0.01	" : 0.01	
c : 0.27	d : 0.15	e : 0.13	! : 0.11	f : 0.07	g : 0.05	= : 0.03	[ : 0.03	i : 0.01	h : 0.01	a : 0.01	x : 0.01	r : 0.01	
c : 0.31	d : 0.11	b : 0.11	e : 0.11	f : 0.07	[ : 0.05	= : 0.03	g : 0.03	i : 0.01	h : 0.01	x : 0.01	s : 0.01	r : 0.01	! : 0.01	
c : 0.31	b : 0.13	d : 0.11	e : 0.09	f : 0.07	a : 0.05	r : 0.03	g : 0.03	= : 0.01	h : 0.01	[ : 0.01	x : 0.01	s : 0.01	p : 0.01	
o : 0.64	c : 0.11	r : 0.03	d : 0.03	l : 0.01	n : 0.01	m : 0.01	b : 0.01	x : 0.01	s : 0.01	p : 0.01	e : 0.01	
o : 0.66	n : 0.13	l : 0.05	r : 0.03	c : 0.01	m : 0.01	x : 0.01	s : 0.01	p : 0.01	
o : 0.66	n : 0.13	l : 0.05	r : 0.03	c : 0.01	m : 0.01	x : 0.01	s : 0.01	p : 0.01	
o : 0.66	n : 0.13	l : 0.05	r : 0.03	= : 0.01	m : 0.01	x : 0.01	s : 0.01	p : 0.01	
o : 0.66	n : 0.13	r : 0.03	= : 0.01	l : 0.01	c : 0.01	x : 0.01	s : 0.01	p : 0.01	d : 0.01	e : 0.01	
o : 0.66	n : 0.11	r : 0.03	d : 0.03	= : 0.01	l : 0.01	c : 0.01	x : 0.01	s : 0.01	p : 0.01	e : 0.01	
c : 0.33	d : 0.11	b : 0.11	e : 0.09	f : 0.07	= : 0.05	a : 0.05	g : 0.03	r : 0.01	h : 0.01	o : 0.01	x : 0.01	s : 0.01	
c : 0.33	b : 0.13	d : 0.11	e : 0.09	f : 0.07	= : 0.05	g : 0.03	r : 0.01	] : 0.01	h : 0.01	4 : 0.01	x : 0.01	s : 0.01	3 : 0.01	
c : 0.35	e : 0.11	d : 0.09	f : 0.07	2 : 0.07	= : 0.05	g : 0.03	] : 0.03	i : 0.01	h : 0.01	4 : 0.01	b : 0.01	x : 0.01	a : 0.01	3 : 0.01	
] : 0.21	2 : 0.17	e : 0.11	d : 0.09	f : 0.07	= : 0.05	3 : 0.05	g : 0.03	c : 0.03	4 : 0.03	i : 0.01	h : 0.01	b : 0.01	x : 0.01	
e : 0.17	2 : 0.13	g : 0.11	f : 0.09	c : 0.07	d : 0.05	= : 0.05	a : 0.05	3 : 0.03	b : 0.03	] : 0.03	4 : 0.03	i : 0.01	h : 0.01	x : 0.01	
g : 0.15	f : 0.11	e : 0.11	d : 0.09	] : 0.09	= : 0.05	2 : 0.05	3 : 0.05	b : 0.05	c : 0.05	4 : 0.03	i : 0.01	h : 0.01	x : 0.01	a : 0.01	
g : 0.17	d : 0.13	c : 0.11	e : 0.11	b : 0.09	= : 0.07	f : 0.05	2 : 0.05	4 : 0.03	] : 0.03	i : 0.01	h : 0.01	3 : 0.01	a : 0.01	
g : 0.15	d : 0.13	] : 0.11	e : 0.09	c : 0.07	b : 0.07	= : 0.07	4 : 0.05	f : 0.05	2 : 0.05	i : 0.01	h : 0.01	a : 0.01	3 : 0.01	
d : 0.17	g : 0.15	c : 0.11	e : 0.09	= : 0.09	4 : 0.07	f : 0.05	i : 0.03	a : 0.03	b : 0.03	3 : 0.03	] : 0.01	h : 0.01	2 : 0.01	
g : 0.15	d : 0.13	4 : 0.09	= : 0.09	] : 0.07	3 : 0.07	c : 0.07	f : 0.05	2 : 0.05	i : 0.03	e : 0.03	b : 0.03	a : 0.01	h : 0.01	
g : 0.15	d : 0.09	3 : 0.09	4 : 0.09	] : 0.07	f : 0.07	2 : 0.07	= : 0.07	c : 0.05	i : 0.03	a : 0.03	e : 0.03	h : 0.03	b : 0.01	
3 : 0.13	d : 0.11	e : 0.09	f : 0.09	2 : 0.07	4 : 0.07	g : 0.07	= : 0.07	h : 0.05	c : 0.05	i : 0.03	] : 0.03	a : 0.01	b : 0.01	
e : 0.11	3 : 0.09	2 : 0.09	f : 0.07	] : 0.07	g : 0.07	= : 0.07	c : 0.05	h : 0.05	d : 0.05	i : 0.05	4 : 0.05	b : 0.05	: : 0.01	
e : 0.13	c : 0.13	3 : 0.11	d : 0.07	f : 0.07	b : 0.07	g : 0.07	= : 0.07	h : 0.05	i : 0.05	2 : 0.03	4 : 0.01	a : 0.01	] : 0.01	
e : 0.15	c : 0.11	i : 0.09	d : 0.09	f : 0.09	b : 0.09	g : 0.07	3 : 0.05	h : 0.05	= : 0.05	] : 0.03	4 : 0.03	
e : 0.13	c : 0.13	f : 0.11	i : 0.09	= : 0.07	b : 0.07	g : 0.07	3 : 0.05	h : 0.05	d : 0.05	m : 0.01	] : 0.01	2 : 0.01	4 : 0.01	a : 0.01	
] : 0.17	i : 0.09	e : 0.07	c : 0.07	f : 0.07	g : 0.07	= : 0.05	2 : 0.05	d : 0.05	a : 0.03	h : 0.03	: : 0.03	b : 0.03	4 : 0.03	m : 0.01	3 : 0.01	

#score	704.3056903686102
#seq	51
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_transcript_m2_run2.txt

#BEAR
$$bb!!ccc####ddddnnnnndddd4444ccc22bb4	chr12:6879792-6880013(+)$1	221	13	51	13.3279
==========[bbddddnnnnndddd333bb]======	chr2:20232516-20232744(-)$1	228	130	168	15.6245
"dddd[ccc!!ddddrrrrrrrrrdddd4444ccc]dd	chr17:74676729-74676998(-)$1	269	168	206	10.6598
==========[ddddpppppppdddd333=========	chrX:19377654-19377935(+)$1	281	238	276	12.1495
##cccdddd!!a[cccooooooccc]a22dddd]ccc6	chr11:111955967-111956229(-)$1	262	77	115	13.0953
!!ccc!!dddd[a[ccclllccc]a]dddd333ccc44	chr2:219679540-219679791(+)$1	251	91	129	12.5439
dffffff[==========lll==========ffffff]	chr14:95090152-95090386(+)$1	234	172	210	13.1595
h####ccc[ccc!!ddddllldddd]ccc]ccc4444h	chr12:123994262-123994499(-)$1	237	40	78	12.5197
$$$$$ggggggg"""cccmmmmccc333ggggggg22e	chr11:33731417-33731772(-)$1	355	172	210	12.7849
""ccc[dddd[cccrrrrrrrrrccc]dddd]ccc]dd	chr17:77807249-77807488(-)$1	239	53	91	11.1605
eeccc[dddd"""ddddnnnnnddddddddccc]eeee	chr17:40949868-40950181(-)$1	313	10	48	12.7398
======!!a!!bb[cccbblllbb]cccbb22a]====	chr20:43955664-43955960(-)$1	296	223	261	12.2204
hhffffff[==========lll==========ffffff	chr14:95090217-95090430(+)$1	213	106	144	12.8723
aggggggg!!ccc[a[ccclllccc]a]ccc333gggg	chr8:99057476-99057678(-)$1	202	161	199	14.5915
e[ffffff[ddddcccooooooccc4444ddddfffff	chr19:1088344-1088635(-)$1	291	32	70	13.3999
gggggg[ccc####cccoooooocccccc]ggggggg:	chr14:24678843-24679173(-)$1	330	19	57	14.5404
iiiiiiiiiccc[ddddlllddddccc]iiiiiiiiic	chr17:79214860-79215147(+)$1	287	225	263	13.9567
ee!!a[ccc[dddd[bbnnnnnbbddddccca]eeeee	chr19:40884039-40884388(+)$1	349	4	42	11.5539
eeeggggggg[a[ddddmmmmddddagggggggcccoo	chr1:109857226-109857465(-)$1	239	117	155	11.4530
fffff[cccccc!!cccnnnnnccc333ccc]cccfff	chr2:88427369-88427572(-)$1	203	39	77	15.7838
bb!!ggggggg[eeeeellleeeee333ggggggg22b	chr20:57603763-57603989(-)$1	226	13	51	11.8863
!!eeeee!!cccacccooooooccc]a]ccceeeee22	chr17:4848917-4849172(-)$1	255	106	144	13.4088
eeee!!a!!bb"""ddddllldddd333bb22a]eeee	chr20:30156909-30157161(+)$1	252	13	51	13.0723
ggg[ccc[ccc"""accclllccc]a333ccccccggg	chr15:41149524-41149777(+)$1	253	11	49	15.1544
cggggggga####ddddnnnnndddd4444a]gggggg	chr16:69496336-69496617(+)$1	281	180	218	15.7830
iiiiiiiiddddxxxxxxxxxxxxxxxdddd]iiiiii	chr20:48741093-48741339(-)$1	246	83	121	10.8594
!bb[ffffffddddcccnnnnnccc333dddd]fffff	chr2:98262469-98262707(+)$1	238	49	87	13.0173
f:ffffff!!gggggggnnnnnggggggg4444fffff	chr19:39924228-39924445(-)$1	217	50	88	11.0801
HHiiiiiiiii!!ddddoooooodddd22iiiiiiiii	chr3:13358659-13358926(-)$1	267	173	211	14.1341
eeeee[ccc####ddddmmmmdddd333ccceeeeehh	chr19:19638856-19639088(+)$1	232	20	58	12.4551
[ccc!!ffffff!!cccnnnnnccc]ffffff22ccc]	chr4:39455730-39455946(-)$1	216	41	79	12.7484
dddd!!ccc####ddddoooooodddd]cccddddccc	chr2:38939659-38939899(+)$1	240	77	115	13.0883
::ccc[eeeee[ddddoooooodddd]eeeee333ccc	chr19:58906016-58906266(+)$1	250	5	43	10.7923
ffffff[ccc[ccccccmmmmccc]cccccc22fffff	chr2:241904381-241904643(-)$1	262	126	164	11.4868
fffff[gggggggccc[bblllbbccc]ggggggg]ff	chr22:24108055-24108275(-)$1	220	83	121	12.2587
iiiiiiiii[cccrrrrrrrrrccc22iiiiiiiii22	chr2:71215546-71215814(-)$1	268	160	198	12.7784
gggggg[dddd[ddddoooooodddd]dddd]gggggg	chr2:97525516-97525834(-)$1	318	164	202	13.6772
bffffff!!ccc!!cccmmmmccc]ccc22ffffff]b	chr11:67379746-67380014(+)$1	268	101	139	11.0236
d####============mmmm============ddddg	chr3:197678009-197678262(+)$1	253	184	222	12.5478
==========="""cccnnnnnccc4444=========	chr7:98993973-98994227(-)$1	254	57	95	17.9587
ggggg[bb!!ccc[cccnnnnnccccccbb]ggggggg	chr17:39958231-39958551(-)$1	320	94	132	14.2344
bb"""gggggggeeeeennnnneeeee333ggggggg3	chr9:101984731-101985008(+)$1	277	148	186	12.9848
ccccc[a!!ccc[ccc[bboooooobb]ccc]ccc]ac	chrX:119005809-119006059(+)$1	250	193	231	11.4312
c[iiiiiiiii$$$$$ccclllccciiiiiiiii]ccc	chr20:1424159-1424464(-)$1	305	103	141	13.4948
[a[eeeee####ddddoooooodddd22eeeee]a]gg	chr19:47278546-47278828(-)$1	282	182	220	13.1420
d[a####a[dddd!!cccmmmmccc22dddd]a4444a	chr3:133495959-133496163(+)$1	204	103	141	11.2721
dd============[bboooooobb333==========	chr17:78093380-78093634(+)$1	254	103	141	15.7719
Fggggggg[bb####bbnnnnnbb4444bb]ggggggg	chr16:56396639-56396922(-)$1	283	123	161	13.8687
fffffbb==========[allla]==========]bb9	chr12:56631359-56631604(+)$1	245	66	104	11.8684
eeeee!!ccc$$$$$bbnnnnnbb4444ccc4444eee	chr3:197682540-197682756(+)$1	216	174	212	12.8666
ggggggg[bb[a!!ccclllccc333a]bb]ggggggg	chr2:219679600-219679869(+)$1	269	89	127	13.8670
[ccc"""eeeee[cccooooooccceeeee333ccc]d	chr17:4841006-4841263(-)$1	257	64	102	13.1065
========[bb!!bbrrrrrrrrrbb333bb]======	chr5:149827167-149827395(-)$1	228	83	121	13.0156
ggg:iiiiiiiii!!bboooooobb4444iiiiiiiii	chr20:25206149-25206452(+)$1	303	188	226	14.2531
FFFggggggg!!eeeeeooooooeeeeegggggggfff	chr19:58905776-58905996(+)$1	220	5	43	11.8237

#otherMatches

#Seq PSSM
CACCUCCUGACCUGCUCCAUCUGAGCUCUCCAGCUGGC	chr12:6879792-6880013(+)$1	221	13	51	13.3279
ACCCUGAGUACUUUCAGGAAGACUGACUUAAAUAUUCG	chr2:20232516-20232744(-)$1	228	130	168	15.6245
CAUAAAUCUGCUGAGCUCUAGACCCUCAAUCAGGACUU	chr17:74676729-74676998(-)$1	269	168	206	10.6598
GUGUAGAUUGAGCAGGUAGUAAUUGCAUGCAGUUUGUA	chrX:19377654-19377935(+)$1	281	238	276	12.1495
GUGUGGAGAAGCCAGGGAAUCGCCUAGACUCUCGCACU	chr11:111955967-111956229(-)$1	262	77	115	13.0953
AGCUGAUCCAGAAGUACAAGGUGGUCCUGGCCCCGGAG	chr2:219679540-219679791(+)$1	251	91	129	12.5439
GGGCCCAUGGACUCUUCAGUCUGGAGGGUCCUGGGCCU	chr14:95090152-95090386(+)$1	234	172	210	13.1595
AAUUGUACCAGUAGGGCCCUUGGCCAGCUAGUGUUUCU	chr12:123994262-123994499(-)$1	237	40	78	12.5197
AAAGGCUUGAUAUUUUCCAAAUGGAUCCUGUUGGGAAA	chr11:33731417-33731772(-)$1	355	172	210	12.7849
UGUCAAGUGCUGACUCUACUCCCGUUUGUACGUGGUGU	chr17:77807249-77807488(-)$1	239	53	91	11.1605
UACUCGAUUUCCCAGGAGCGUUUCCUAGAUGAGCUAGA	chr17:40949868-40950181(-)$1	313	10	48	12.7398
GCCAGGUUCUUCUUGAGCUUUGGGCCUCAGUUGCCCUG	chr20:43955664-43955960(-)$1	296	223	261	12.2204
GGGGCCCAUGGACUCUUCAGUCUGGAGGGUCCUGGGCC	chr14:95090217-95090430(+)$1	213	106	144	12.8723
GGCGGGCAGAUGUGAGCCCACGGGGGUGACAGCAUGCC	chr8:99057476-99057678(-)$1	202	161	199	14.5915
GUGGCCUCCACCCACGUUCUCCCGUCCUGGGGUGAGGC	chr19:1088344-1088635(-)$1	291	32	70	13.3999
UUUGUCCUCAAAGCUCCCAAAGUGGAUGAAGAUGAAGA	chr14:24678843-24679173(-)$1	330	19	57	14.5404
GGGGCUUACUGUGUGCAGACUGCAACAUGUGGGUCUUG	chr17:79214860-79215147(+)$1	287	225	263	13.9567
AGCUGACAGCGUGGGCAACGCCUGCCGCCUGCUCUGAG	chr19:40884039-40884388(+)$1	349	4	42	11.5539
UGGUCACAGUCGUAGCAGGAGUGCUCAUUGUGAAGAAA	chr1:109857226-109857465(-)$1	239	117	155	11.4530
AGUUUCUCCGGCAAGUACCAACUGCAGAGCCAGGAAAA	chr2:88427369-88427572(-)$1	203	39	77	15.7838
GUUAUUUCUUAUAUUCAUGUUGAGUUUUUAAGAAAACA	chr20:57603763-57603989(-)$1	226	13	51	11.8863
CUGGGGGCCAGGGCUGGAUGGACAGACACCUCCCCCUA	chr17:4848917-4849172(-)$1	255	106	144	13.4088
UUAUGAGGAGUCAAAUCCUAAGGAUCCAGCGGCAGUGA	chr20:30156909-30157161(+)$1	252	13	51	13.0723
CCCGAGCUCCUCUUCCAUGCUGUGCGCCCAGGGCUGGG	chr15:41149524-41149777(+)$1	253	11	49	15.1544
GCCAGUUGCAUUCUUCCCCCUUGGAGCCAAGACGAUUG	chr16:69496336-69496617(+)$1	281	180	218	15.7830
GGGGCCAGUGAGUUGCCUCUUUCCCUCCUUGUCUGGCC	chr20:48741093-48741339(-)$1	246	83	121	10.8594
CCCGGAAGUUUUGCUGCUAGUCGCGGACGCAAUGGCUU	chr2:98262469-98262707(+)$1	238	49	87	13.0173
GAGCCAGUUCUGCUUCUCGGCAAGGAGCGAUUUGCUGG	chr19:39924228-39924445(-)$1	217	50	88	11.0801
GGGGGUUUUUGGUGGGGUUUUUCCCCCUGUGAAAACUU	chr3:13358659-13358926(-)$1	267	173	211	14.1341
GGCUGCGCACCACAGAGGAGGCUCUCCAUGCCAGCCAC	chr19:19638856-19639088(+)$1	232	20	58	12.4551
AGUACUUUCCUGGGCAAGUGUAUUGAUGGGGAUUUACA	chr4:39455730-39455946(-)$1	216	41	79	12.7484
AGUUAAUCCCCGCAGAUAGUUAGAUCUAGGAGACUGUC	chr2:38939659-38939899(+)$1	240	77	115	13.0883
AAUUCAGAGCUGUGUGUCUCCUUGCAGGGCUCCUCGAA	chr19:58906016-58906266(+)$1	250	5	43	10.7923
GUGGCUGGGGUGCAUUGGACCCAACUGCCCCGAGGCCG	chr2:241904381-241904643(-)$1	262	126	164	11.4868
GAGGUCGGUGCAGACUCGGGGGCCAGUCCUGCACCCAC	chr22:24108055-24108275(-)$1	220	83	121	12.2587
GAAGUCGGGAAGGCACCUACCACCUGCCCUGGCUUUCU	chr2:71215546-71215814(-)$1	268	160	198	12.7784
CUUCCUGUACAGGGCUGGGAAAGGCUGUGUGAGGGGAG	chr2:97525516-97525834(-)$1	318	164	202	13.6772
GAUCCGCCACUUUCGGCCGGAGCUCGAGGAGCGGAUGC	chr11:67379746-67380014(+)$1	268	101	139	11.0236
ACACUGGUAGGUUUUGGGUUUUUGAGAUCUGCCUCAuu	chr3:197678009-197678262(+)$1	253	184	222	12.5478
CUCUUCAUCUUGGCACAGAAAUUGUUUGGGGGAUGGGG	chr7:98993973-98994227(-)$1	254	57	95	17.9587
CCACUUCUAUGUCUCUGGACCACAGGAUGGUGGUGGCA	chr17:39958231-39958551(-)$1	320	94	132	14.2344
GCAAAGCAGUGGCCGCCCGGGCGGCGGGAUCCACUGUC	chr9:101984731-101985008(+)$1	277	148	186	12.9848
ACUCCACGGGCUGAUUUCCGAAAAGGGUGGUGGGCAGG	chrX:119005809-119006059(+)$1	250	193	231	11.4312
GUUUCCCAUGGCCAGUGGCCAUGCCCCAUGGGGAUCGC	chr20:1424159-1424464(-)$1	305	103	141	13.4948
GGCCCCAGCACCCUCCAGGACAGGAGAUCUGGGAUGCC	chr19:47278546-47278828(-)$1	282	182	220	13.1420
GAGAAAAUGCUCCACCUCAUGUGAGUAGGAGGAACAGC	chr3:133495959-133496163(+)$1	204	103	141	11.2721
GGAGGUGUGGGGUAUGCACCUGAGCUCCUGCUUCGCGC	chr17:78093380-78093634(+)$1	254	103	141	15.7719
UGCCUCCUGCGCCCUGUGCCCGACUGACUGGAGGAGGC	chr16:56396639-56396922(-)$1	283	123	161	13.8687
CAGGGGCUGGGGCUGCUGCUGGGGGGCGGCCUCAUGCU	chr12:56631359-56631604(+)$1	245	66	104	11.8684
ACCUUAAAUUGAUUUGCUACAUGCUUAAAAUGAUAGAG	chr3:197682540-197682756(+)$1	216	174	212	12.8666
GGCCCGCAUUGUCCUGGUUCCCAAUAAGAAAGUGGGCC	chr2:219679600-219679869(+)$1	269	89	127	13.8670
GUGUCUAGGACGUGCUGUUCAAAGUUGUCCGCUACGAG	chr17:4841006-4841263(-)$1	257	64	102	13.1065
UUCCUUCCACUCAGAAAUGGCACCUCGAAAGGGGAAGG	chr5:149827167-149827395(-)$1	228	83	121	13.0156
GGCACUUUCUGCACACUGGCUCUGGGACUUGCAGAAGG	chr20:25206149-25206452(+)$1	303	188	226	14.2531
UGGCAGCAUCAGUUGGGAGUGGCCCCAGGGUGCUGGAG	chr19:58905776-58905996(+)$1	220	5	43	11.8237

#DB
..((..(((....((((.....))))....)))..)).	chr12:6879792-6880013(+)$1	1	13	51	13.3279
((((((((((.((((((.....))))...)).))))))	chr2:20232516-20232744(-)$1	1	130	168	15.6245
.((((.(((..((((.........))))....))).))	chr17:74676729-74676998(-)$1	1	168	206	10.6598
((((((((((.((((.......))))...)))))))))	chrX:19377654-19377935(+)$1	1	238	276	12.1495
..(((((((..(.(((......))).)..)))).))).	chr11:111955967-111956229(-)$1	1	77	115	13.0953
..(((..((((.(.(((...))).).))))...)))..	chr2:219679540-219679791(+)$1	1	91	129	12.5439
(((((((.((((((((((...)))))))))))))))).	chr14:95090152-95090386(+)$1	1	172	210	13.1595
(....(((.(((..((((...)))).))).)))....)	chr12:123994262-123994499(-)$1	1	40	78	12.5197
.....(((((((...(((....)))...)))))))..)	chr11:33731417-33731772(-)$1	1	172	210	12.7849
..(((.((((.(((.........))).)))).))).))	chr17:77807249-77807488(-)$1	1	53	91	11.1605
(((((.((((...((((.....))))))))))).))))	chr17:40949868-40950181(-)$1	1	10	48	12.7398
((((((..(..((.(((((...)).)))))..).))))	chr20:43955664-43955960(-)$1	1	223	261	12.2204
))((((((.((((((((((...))))))))))))))))	chr14:95090217-95090430(+)$1	1	106	144	12.8723
)(((((((..(((.(.(((...))).).)))...))))	chr8:99057476-99057678(-)$1	1	161	199	14.5915
(.((((((.(((((((......)))....)))))))))	chr19:1088344-1088635(-)$1	1	32	70	13.3999
((((((.(((....(((......)))))).))))))).	chr14:24678843-24679173(-)$1	1	19	57	14.5404
((((((((((((.((((...))))))).))))))))))	chr17:79214860-79215147(+)$1	1	225	263	13.9567
((..(.(((.((((.((.....)))))))))).)))))	chr19:40884039-40884388(+)$1	1	4	42	11.5539
)))(((((((.(.((((....))))))))))))(((..	chr1:109857226-109857465(-)$1	1	117	155	11.4530
(((((.((((((..(((.....)))...))).))))))	chr2:88427369-88427572(-)$1	1	39	77	15.7838
((..(((((((.(((((...)))))...)))))))..)	chr20:57603763-57603989(-)$1	1	13	51	11.8863
..(((((..(((((((......))).).))))))))..	chr17:4848917-4849172(-)$1	1	106	144	13.4088
((((..(..((...((((...))))...))..).))))	chr20:30156909-30157161(+)$1	1	13	51	13.0723
(((.(((.(((...((((...))).)...)))))))))	chr15:41149524-41149777(+)$1	1	11	49	15.1544
(((((((((....((((.....))))....).))))))	chr16:69496336-69496617(+)$1	1	180	218	15.7830
((((((((((((...............)))).))))))	chr20:48741093-48741339(-)$1	1	83	121	10.8594
.((.(((((((((((((.....)))...)))).)))))	chr2:98262469-98262707(+)$1	1	49	87	13.0173
).((((((..(((((((.....)))))))....)))))	chr19:39924228-39924445(-)$1	1	50	88	11.0801
))(((((((((..((((......))))..)))))))))	chr3:13358659-13358926(-)$1	1	173	211	14.1341
(((((.(((....((((....))))...))))))))))	chr19:19638856-19639088(+)$1	1	20	58	12.4551
.(((..((((((..(((.....))).))))))..))).	chr4:39455730-39455946(-)$1	1	41	79	12.7484
((((..(((....((((......)))).))))))))))	chr2:38939659-38939899(+)$1	1	77	115	13.0883
..(((.(((((.((((......)))).)))))...)))	chr19:58906016-58906266(+)$1	1	5	43	10.7923
((((((.(((.((((((....))).))))))..)))))	chr2:241904381-241904643(-)$1	1	126	164	11.4868
(((((.((((((((((.((...))))).))))))).))	chr22:24108055-24108275(-)$1	1	83	121	12.2587
(((((((((.(((.........)))..)))))))))..	chr2:71215546-71215814(-)$1	1	160	198	12.7784
((((((.((((.((((......)))).)))).))))))	chr2:97525516-97525834(-)$1	1	164	202	13.6772
(((((((..(((..(((....))).)))..)))))).)	chr11:67379746-67380014(+)$1	1	101	139	11.0236
(....((((((((((((....)))))))))))))))))	chr3:197678009-197678262(+)$1	1	184	222	12.5478
(((((((((((...(((.....)))....)))))))))	chr7:98993973-98994227(-)$1	1	57	95	17.9587
(((((.((..(((.(((.....)))))))).)))))))	chr17:39958231-39958551(-)$1	1	94	132	14.2344
((...((((((((((((.....)))))...))))))).	chr9:101984731-101985008(+)$1	1	148	186	12.9848
(((((.(..(((.(((.((......)).))).))).))	chrX:119005809-119006059(+)$1	1	193	231	11.4312
(.(((((((((.....(((...)))))))))))).)))	chr20:1424159-1424464(-)$1	1	103	141	13.4948
.(.(((((....((((......))))..))))).).))	chr19:47278546-47278828(-)$1	1	182	220	13.1420
(.(....(.((((..(((....)))..)))).)....)	chr3:133495959-133496163(+)$1	1	103	141	11.2721
((((((((((((((.((......))...))))))))))	chr17:78093380-78093634(+)$1	1	103	141	15.7719
((((((((.((....((.....))....)).)))))))	chr16:56396639-56396922(-)$1	1	123	161	13.8687
(((((((((((((((((.(...).)))))))))).)).	chr12:56631359-56631604(+)$1	1	66	104	11.8684
(((((..(((.....((.....))....)))....)))	chr3:197682540-197682756(+)$1	1	174	212	12.8666
(((((((.((.(..(((...)))...).)).)))))))	chr2:219679600-219679869(+)$1	1	89	127	13.8670
.(((...(((((.(((......))))))))...))).)	chr17:4841006-4841263(-)$1	1	64	102	13.1065
((((((((.((..((.........))...)).))))))	chr5:149827167-149827395(-)$1	1	83	121	13.0156
))).(((((((((..((......))....)))))))))	chr20:25206149-25206452(+)$1	1	188	226	14.2531
((((((((((..(((((......))))))))))))(((	chr19:58905776-58905996(+)$1	1	5	43	11.8237

#PSSM
e : 0.12	g : 0.10	= : 0.09	d : 0.09	f : 0.09	! : 0.05	i : 0.05	b : 0.05	c : 0.05	[ : 0.05	$ : 0.03	" : 0.03	h : 0.03	F : 0.03	# : 0.01	a : 0.01	H : 0.01	: : 0.01	
g : 0.16	f : 0.10	e : 0.10	= : 0.09	d : 0.05	# : 0.05	[ : 0.05	i : 0.05	b : 0.05	c : 0.05	$ : 0.03	! : 0.03	: : 0.03	" : 0.01	h : 0.01	H : 0.01	a : 0.01	F : 0.01	
f : 0.16	g : 0.16	c : 0.14	= : 0.10	i : 0.09	e : 0.09	b : 0.03	d : 0.03	# : 0.03	! : 0.03	$ : 0.01	" : 0.01	[ : 0.01	a : 0.01	F : 0.01	
f : 0.16	g : 0.16	c : 0.14	= : 0.10	i : 0.09	e : 0.09	# : 0.05	d : 0.03	! : 0.03	[ : 0.03	b : 0.01	$ : 0.01	" : 0.01	: : 0.01	
f : 0.18	g : 0.18	c : 0.12	= : 0.10	i : 0.10	! : 0.07	e : 0.07	# : 0.05	" : 0.03	d : 0.01	$ : 0.01	a : 0.01	
g : 0.20	[ : 0.18	= : 0.12	f : 0.12	! : 0.10	i : 0.10	c : 0.03	e : 0.03	d : 0.01	# : 0.01	b : 0.01	" : 0.01	
g : 0.18	c : 0.14	f : 0.12	= : 0.10	i : 0.10	d : 0.05	! : 0.05	[ : 0.05	e : 0.05	a : 0.03	b : 0.03	# : 0.01	" : 0.01	
c : 0.18	g : 0.16	= : 0.12	i : 0.10	d : 0.09	! : 0.09	f : 0.09	[ : 0.05	e : 0.05	b : 0.01	a : 0.01	
c : 0.18	= : 0.12	! : 0.12	d : 0.10	[ : 0.10	g : 0.10	i : 0.09	a : 0.03	f : 0.03	e : 0.03	# : 0.01	b : 0.01	
c : 0.18	= : 0.14	d : 0.12	! : 0.10	g : 0.10	# : 0.09	b : 0.07	i : 0.05	[ : 0.03	f : 0.03	e : 0.03	
c : 0.18	d : 0.12	# : 0.10	[ : 0.10	= : 0.10	g : 0.09	! : 0.07	b : 0.05	i : 0.05	e : 0.03	" : 0.01	f : 0.01	$ : 0.01	
c : 0.20	# : 0.12	d : 0.12	= : 0.09	[ : 0.07	g : 0.07	" : 0.07	a : 0.05	! : 0.05	b : 0.03	$ : 0.03	f : 0.01	e : 0.01	i : 0.01	
d : 0.16	! : 0.12	# : 0.10	[ : 0.09	= : 0.09	" : 0.09	c : 0.09	e : 0.05	b : 0.03	a : 0.03	g : 0.03	$ : 0.03	x : 0.01	i : 0.01	
d : 0.29	c : 0.14	! : 0.12	= : 0.09	[ : 0.07	" : 0.07	e : 0.05	# : 0.03	$ : 0.03	x : 0.01	g : 0.01	r : 0.01	b : 0.01	
c : 0.30	d : 0.29	= : 0.07	e : 0.05	r : 0.03	a : 0.03	[ : 0.03	$ : 0.03	! : 0.03	" : 0.01	x : 0.01	g : 0.01	# : 0.01	b : 0.01	
c : 0.36	d : 0.25	b : 0.09	r : 0.07	= : 0.07	e : 0.05	p : 0.01	[ : 0.01	x : 0.01	g : 0.01	$ : 0.01	
c : 0.29	d : 0.20	o : 0.12	b : 0.09	r : 0.07	= : 0.07	e : 0.05	[ : 0.03	p : 0.01	x : 0.01	g : 0.01	
n : 0.25	o : 0.23	c : 0.09	m : 0.09	r : 0.07	l : 0.07	b : 0.05	= : 0.03	d : 0.03	p : 0.01	x : 0.01	[ : 0.01	
n : 0.25	o : 0.23	l : 0.14	m : 0.12	r : 0.07	b : 0.05	c : 0.03	p : 0.01	= : 0.01	x : 0.01	a : 0.01	
n : 0.25	o : 0.25	l : 0.25	m : 0.12	r : 0.07	p : 0.01	x : 0.01	
n : 0.25	o : 0.25	l : 0.18	m : 0.12	r : 0.07	c : 0.03	p : 0.01	d : 0.01	e : 0.01	x : 0.01	
n : 0.25	o : 0.25	l : 0.10	c : 0.09	d : 0.09	r : 0.07	= : 0.03	m : 0.03	p : 0.01	e : 0.01	x : 0.01	
c : 0.34	d : 0.23	o : 0.12	b : 0.09	r : 0.05	= : 0.05	e : 0.03	x : 0.01	g : 0.01	a : 0.01	
c : 0.34	d : 0.27	b : 0.12	= : 0.05	e : 0.05	r : 0.03	] : 0.03	x : 0.01	g : 0.01	o : 0.01	3 : 0.01	
c : 0.32	d : 0.29	= : 0.07	] : 0.07	e : 0.05	b : 0.05	4 : 0.03	a : 0.01	x : 0.01	g : 0.01	o : 0.01	3 : 0.01	
d : 0.21	3 : 0.14	c : 0.14	] : 0.10	4 : 0.09	= : 0.07	e : 0.05	a : 0.03	2 : 0.03	b : 0.03	x : 0.01	g : 0.01	i : 0.01	
3 : 0.20	c : 0.14	4 : 0.12	d : 0.10	a : 0.07	= : 0.07	] : 0.05	2 : 0.05	e : 0.05	g : 0.03	x : 0.01	f : 0.01	b : 0.01	i : 0.01	
3 : 0.21	d : 0.14	4 : 0.12	] : 0.12	c : 0.10	= : 0.07	2 : 0.05	e : 0.05	g : 0.03	i : 0.03	f : 0.01	
c : 0.20	d : 0.12	4 : 0.10	g : 0.10	3 : 0.09	= : 0.09	b : 0.09	2 : 0.05	i : 0.05	e : 0.05	f : 0.01	
c : 0.18	d : 0.16	b : 0.12	= : 0.12	g : 0.09	i : 0.09	4 : 0.07	e : 0.05	] : 0.03	f : 0.01	2 : 0.01	3 : 0.01	
c : 0.23	= : 0.12	d : 0.12	g : 0.12	i : 0.09	] : 0.05	b : 0.03	4 : 0.03	3 : 0.03	2 : 0.03	f : 0.03	e : 0.03	a : 0.01	
g : 0.18	] : 0.16	= : 0.10	i : 0.09	c : 0.07	d : 0.07	e : 0.07	4 : 0.05	3 : 0.05	f : 0.05	2 : 0.05	a : 0.01	
g : 0.21	c : 0.14	= : 0.12	i : 0.10	3 : 0.07	d : 0.05	f : 0.05	a : 0.05	e : 0.05	] : 0.03	4 : 0.03	2 : 0.03	
g : 0.20	c : 0.14	f : 0.12	= : 0.10	i : 0.10	] : 0.09	4 : 0.05	e : 0.05	2 : 0.03	3 : 0.03	d : 0.03	
g : 0.21	c : 0.18	f : 0.12	= : 0.10	e : 0.09	i : 0.09	4 : 0.05	d : 0.03	] : 0.03	2 : 0.01	3 : 0.01	a : 0.01	
f : 0.16	g : 0.16	c : 0.14	= : 0.10	e : 0.10	] : 0.09	i : 0.09	b : 0.03	4 : 0.03	2 : 0.03	d : 0.01	
g : 0.18	f : 0.16	= : 0.10	c : 0.09	2 : 0.07	e : 0.07	i : 0.07	d : 0.05	4 : 0.05	b : 0.03	] : 0.03	o : 0.01	h : 0.01	a : 0.01	
g : 0.16	f : 0.14	= : 0.10	e : 0.09	c : 0.09	d : 0.05	i : 0.05	4 : 0.03	] : 0.03	h : 0.03	b : 0.03	2 : 0.03	6 : 0.01	: : 0.01	o : 0.01	3 : 0.01	a : 0.01	9 : 0.01	

#score	716.3519731472818
#seq	55
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_CDS_m1_run2.txt

#BEAR
iiiiiiiooooooiiiiii	chr6:4115994-4116215(-)$1	221	130	149	7.4818
hhhhhhhnnnnnhhhhhhh	chrX:118603724-118603944(+)$1	220	154	173	11.4312
hhhh[bbnnnnnbbhhhhh	chr17:4880247-4880504(-)$1	257	229	248	10.6484
g[bb[bbnnnnnbbbb]gg	chr12:111885229-111885448(+)$1	219	144	163	9.6166
:bb[cccnnnnnccc]bb:	chr1:38464955-38465202(-)$1	247	212	231	9.3448
[ffffffnnnnnffffff2	chr17:7127538-7127784(+)$1	246	107	126	9.4566
ff[ddddnnnnndddd]ff	chr9:95032104-95032318(-)$1	214	76	95	10.1334
hhhhhhhnnnnnhhhhhhh	chr8:48874574-48874819(+)$1	245	57	76	11.4312
hhhhhhhnnnnnhhhhhhh	chr11:77780878-77781164(-)$1	286	33	52	11.4312
[bb[cccnnnnnccc]bbd	chr9:19378783-19378993(-)$1	210	38	57	11.6390
dd!!cccnnnnncccdddd	chr6:35438378-35438582(+)$1	204	27	46	10.8712
gggggggnnnnnggggggg	chr17:57756765-57756981(+)$1	216	147	166	11.8139
gggggggnnnnnggggggg	chr15:28508036-28508317(-)$1	281	122	141	11.8139
!!eeeeennnnneeeee22	chr7:2278952-2279192(-)$1	240	52	71	9.9513
ddd[cccnnnnncccdddd	chr12:56705012-56705257(-)$1	245	86	105	10.6361
bbeeeeennnnneeeee]b	chr11:65402390-65402690(+)$1	300	170	189	9.6833
[bb[cccnnnnnccc]bbd	chr9:19378793-19378996(-)$1	203	41	60	11.6390
hhhhhhhnnnnnhhhhhhh	chr4:84393290-84393535(-)$1	245	205	224	11.4312
hhhhhhhnnnnnhhhhhhh	chr6:74227864-74228069(-)$1	205	51	70	11.4312
[bb[cccnnnnnccc]bbd	chr9:19378803-19379010(-)$1	207	55	74	11.6390
[ffffffnnnnnffffff]	chr12:25260648-25260895(+)$1	247	16	35	9.6629
hhhhhhhnnnnnhhhhhhh	chr6:74227857-74228064(-)$1	207	46	65	11.4312
gggggggnnnnnggggggg	chr3:131221473-131221718(-)$1	245	200	219	11.8139
[bb[cccnnnnnccc]bbd	chr9:19378749-19378959(-)$1	210	4	23	11.6390
[ffffffnnnnnffffffc	chr1:47124264-47124510(-)$1	246	22	41	9.6625
hhhhhhhnnnnnhhhhhhh	chrX:118603816-118604052(+)$1	236	62	81	11.4312
gggggggnnnnnggggggg	chr17:40642549-40642755(+)$1	206	177	196	11.8139
=======nnnnn=======	chr2:130940245-130940449(+)$1	204	123	142	11.6364
=======nnnnn=======	chr2:130940170-130940445(+)$1	275	198	217	11.6364
!!eeeeennnnneeeee22	chr6:32942411-32942625(+)$1	214	116	135	9.9513
[bb[cccnnnnnccc]bbd	chr9:19378766-19378983(-)$1	217	28	47	11.6390
fffddddnnnnndddd]ff	chr2:132241627-132241859(-)$1	232	174	193	9.8883
:a!!cccnnnnnccc22a:	chr6:35438405-35438619(+)$1	214	0	19	9.2732
ccc[cccnnnnnccc]ccc	chr8:48874560-48874774(+)$1	214	119	138	11.8555
hhhhhhhnnnnnhhhhhhh	chrX:118603782-118604001(+)$1	219	96	115	11.4312
=======nnnnn=======	chr2:132249347-132249629(-)$1	282	201	220	11.6364
[ccc[bbnnnnnbbccc]c	chr11:86048369-86048676(+)$1	307	183	202	10.6398
hhhhhhhnnnnnhhhhhhh	chrX:118603801-118604016(+)$1	215	77	96	11.4312
fbb[cccnnnnncccbb44	chr12:111885356-111885618(+)$1	262	43	62	10.6775
iiiiiiinnnnniiiiiii	chr6:74227976-74228204(-)$1	228	186	205	12.2294
ggggg[annnnna]ggggg	chr6:31832515-31832770(-)$1	255	108	127	11.4398
gggddddnnnnndddd]gg	chr2:130947973-130948203(+)$1	230	174	193	10.8504
ccc[cccnnnnncccccce	chr4:152024046-152024272(+)$1	226	11	30	11.5930
gggddddnnnnndddd]gg	chr2:132241659-132241891(-)$1	232	206	225	10.8504
bb[a[bbnnnnnbb]abb4	chr8:144102630-144102832(+)$1	202	146	165	9.6669
iiiiiiiooooooiiiiii	chr6:4116015-4116258(-)$1	243	173	192	7.4818
eeeeeeennnnneeeee]e	chr4:152024028-152024246(+)$1	218	59	78	9.8141
dd!!cccnnnnnccc22dd	chr5:179992754-179993007(+)$1	253	5	24	10.8147
ffffcccnnnnnccc]fff	chr17:26677421-26677682(-)$1	261	157	176	10.8368
hhhhhhhnnnnnhhhhhhh	chr1:109778590-109778828(+)$1	238	34	53	11.4312
gggggggnnnnnggggggg	chr17:40642518-40642749(+)$1	231	208	227	11.8139
bb[ddddnnnnndddd22b	chr22:19711290-19711563(+)$1	273	99	118	9.6813
gggddddnnnnndddd]gg	chr2:130947941-130948173(+)$1	232	206	225	10.8504
b!!ddddnnnnndddd22b	chr6:32942405-32942611(+)$1	206	44	63	9.7135
"""ddddnnnnnddddeee	chr9:140446425-140446714(+)$1	289	198	217	9.8814
!!eeeeennnnneeeee]a	chr6:32011424-32011682(-)$1	258	121	140	10.3316
eeeeeeennnnneeeee]e	chr4:152024072-152024284(+)$1	212	15	34	9.8141
[bb[cccnnnnnccc]bbd	chr9:19378796-19379003(-)$1	207	48	67	11.6390
[bb[cccnnnnnccc]bbd	chr9:19378810-19379016(-)$1	206	61	80	11.6390
hhhhhhhnnnnnhhhhhhh	chr1:109778576-109778790(+)$1	214	48	67	11.4312
bb[a[bbnnnnnbb]abb4	chr8:144102632-144102864(+)$1	232	144	163	9.6669
ff[ddddnnnnndddd]ff	chr9:95032065-95032304(-)$1	239	62	81	10.1334
dd[a[bbnnnnnbb]a]dd	chr9:19379384-19379593(-)$1	209	144	163	9.7978

#otherMatches

#Seq PSSM
CAUGUCCAAGGAAGGAUGU	chr6:4115994-4116215(-)$1	221	130	149	7.4818
GCAGGGGCCACAUCCCUGU	chrX:118603724-118603944(+)$1	220	154	173	11.4312
UCAGGUGGCCAUCACUGAG	chr17:4880247-4880504(-)$1	257	229	248	10.6484
gggCAGGCAGGACCGUGCC	chr12:111885229-111885448(+)$1	219	144	163	9.6166
AUGACAAUACCUUUGCCAA	chr1:38464955-38465202(-)$1	247	212	231	9.3448
AGGGCUGGGCAGCGGCCUG	chr17:7127538-7127784(+)$1	246	107	126	9.4566
AAGCAGUGCCCAGCUGGUU	chr9:95032104-95032318(-)$1	214	76	95	10.1334
UGUUAGUUCACCACUGACA	chr8:48874574-48874819(+)$1	245	57	76	11.4312
uuuaaaacauauuuuuaaa	chr11:77780878-77781164(-)$1	286	33	52	11.4312
AGAAAUAGUAAAUGUGUCA	chr9:19378783-19378993(-)$1	210	38	57	11.6390
AGCUUGUGUAUAACAUUCA	chr6:35438378-35438582(+)$1	204	27	46	10.8712
UAAAAAUUAUACAUUUUUA	chr17:57756765-57756981(+)$1	216	147	166	11.8139
GUGGAAGUCAGUUUUCCAU	chr15:28508036-28508317(-)$1	281	122	141	11.8139
CGGCCCGGCCUUCGGGUGU	chr7:2278952-2279192(-)$1	240	52	71	9.9513
CUCACAGAGCUGCUGGAGG	chr12:56705012-56705257(-)$1	245	86	105	10.6361
UGGGGUUCGCAUGGCCCUC	chr11:65402390-65402690(+)$1	300	170	189	9.6833
AGAAAUAGUAAAUGUGUCA	chr9:19378793-19378996(-)$1	203	41	60	11.6390
GUUUUUGGUUCUUAAAAAC	chr4:84393290-84393535(-)$1	245	205	224	11.4312
AUUUGCACUGAAUGCAAAU	chr6:74227864-74228069(-)$1	205	51	70	11.4312
AGAAAUAGUAAAUGUGUCA	chr9:19378803-19379010(-)$1	207	55	74	11.6390
GAUCACCUGACUGGUGGUG	chr12:25260648-25260895(+)$1	247	16	35	9.6629
AUUUGCACUGAAUGCAAAU	chr6:74227857-74228064(-)$1	207	46	65	11.4312
GGCCUGGUGCAGUUGGGCC	chr3:131221473-131221718(-)$1	245	200	219	11.8139
AGAAAUAGUAAAUGUGUCA	chr9:19378749-19378959(-)$1	210	4	23	11.6390
AUUGGGUACUUCACCUAGC	chr1:47124264-47124510(-)$1	246	22	41	9.6625
GCAGGGGCCACAUCCCUGU	chrX:118603816-118604052(+)$1	236	62	81	11.4312
gacagagucucccucuguc	chr17:40642549-40642755(+)$1	206	177	196	11.8139
CCCUGCCCCAGUGGCGGGG	chr2:130940245-130940449(+)$1	204	123	142	11.6364
CCCUGCCCCAGUGGCGGGG	chr2:130940170-130940445(+)$1	275	198	217	11.6364
AAACUGGGUCUACCGGUGA	chr6:32942411-32942625(+)$1	214	116	135	9.9513
AGAAAUAGUAAAUGUGUCA	chr9:19378766-19378983(-)$1	217	28	47	11.6390
GCUGCCCAAGGGGGGCGGG	chr2:132241627-132241859(-)$1	232	174	193	9.8883
AGCUUGUGUAUAACAUUCA	chr6:35438405-35438619(+)$1	214	0	19	9.2732
AACCCCAAGAAGUGGUGUU	chr8:48874560-48874774(+)$1	214	119	138	11.8555
GCAGGGGCCACAUCCCUGU	chrX:118603782-118604001(+)$1	219	96	115	11.4312
CCCUGCCCCAGUGGCGGGG	chr2:132249347-132249629(-)$1	282	201	220	11.6364
CAGUUGACUCAUUCACUCA	chr11:86048369-86048676(+)$1	307	183	202	10.6398
GCAGGGGCCACAUCCCUGU	chrX:118603801-118604016(+)$1	215	77	96	11.4312
UCCACUGGAGUUCAGGGUC	chr12:111885356-111885618(+)$1	262	43	62	10.6775
AUUUGCACUGAAUGCAAAU	chr6:74227976-74228204(-)$1	228	186	205	12.2294
CGGUCGCAUCCCGGGGCUG	chr6:31832515-31832770(-)$1	255	108	127	11.4398
GCUGCCCAAGGGGGGCGGG	chr2:130947973-130948203(+)$1	230	174	193	10.8504
CGAUGGUUACUUGCUUCGU	chr4:152024046-152024272(+)$1	226	11	30	11.5930
GCUGCCCAAGGGGGGCGGG	chr2:132241659-132241891(-)$1	232	206	225	10.8504
GUACUGCCUGAAGCCGACC	chr8:144102630-144102832(+)$1	202	146	165	9.6669
CAUGUCCAAGGAAGGAUGU	chr6:4116015-4116258(-)$1	243	173	192	7.4818
UGGUUUUACUAAAAAACGC	chr4:152024028-152024246(+)$1	218	59	78	9.8141
aauuaauuauauauuuuuu	chr5:179992754-179993007(+)$1	253	5	24	10.8147
GGAGGAUAUUCAGUCUCUC	chr17:26677421-26677682(-)$1	261	157	176	10.8368
CCAUGACAACAAGUCAUGG	chr1:109778590-109778828(+)$1	238	34	53	11.4312
gacagagucucccucuguc	chr17:40642518-40642749(+)$1	231	208	227	11.8139
GCUGAGCUUACUGCUCCUG	chr22:19711290-19711563(+)$1	273	99	118	9.6813
GCUGCCCAAGGGGGGCGGG	chr2:130947941-130948173(+)$1	232	206	225	10.8504
UACCUACACAAGGUAGUGA	chr6:32942405-32942611(+)$1	206	44	63	9.7135
AGGGGCCGCAAGGGCCGGG	chr9:140446425-140446714(+)$1	289	198	217	9.8814
AGGAGAGUGAGCCUCUCAC	chr6:32011424-32011682(-)$1	258	121	140	10.3316
UGGUUUUACUAAAAAACGC	chr4:152024072-152024284(+)$1	212	15	34	9.8141
AGAAAUAGUAAAUGUGUCA	chr9:19378796-19379003(-)$1	207	48	67	11.6390
AGAAAUAGUAAAUGUGUCA	chr9:19378810-19379016(-)$1	206	61	80	11.6390
CCAUGACAACAAGUCAUGG	chr1:109778576-109778790(+)$1	214	48	67	11.4312
GUACUGCCUGAAGCCGACC	chr8:144102632-144102864(+)$1	232	144	163	9.6669
AAGCAGUGCCCAGCUGGUU	chr9:95032065-95032304(-)$1	239	62	81	10.1334
AGAGACGGUAAACGCCAUU	chr9:19379384-19379593(-)$1	209	144	163	9.7978

#DB
(((((((......))))))	chr6:4115994-4116215(-)$1	1	130	149	7.4818
(((((((.....)))))))	chrX:118603724-118603944(+)$1	1	154	173	11.4312
((((.((.....)))))))	chr17:4880247-4880504(-)$1	1	229	248	10.6484
(.((.((.....)))).))	chr12:111885229-111885448(+)$1	1	144	163	9.6166
.((.(((.....))).)).	chr1:38464955-38465202(-)$1	1	212	231	9.3448
.((((((.....)))))).	chr17:7127538-7127784(+)$1	1	107	126	9.4566
((.((((.....)))).))	chr9:95032104-95032318(-)$1	1	76	95	10.1334
(((((((.....)))))))	chr8:48874574-48874819(+)$1	1	57	76	11.4312
(((((((.....)))))))	chr11:77780878-77781164(-)$1	1	33	52	11.4312
.((.(((.....))).)))	chr9:19378783-19378993(-)$1	1	38	57	11.6390
((..(((.....)))))))	chr6:35438378-35438582(+)$1	1	27	46	10.8712
(((((((.....)))))))	chr17:57756765-57756981(+)$1	1	147	166	11.8139
(((((((.....)))))))	chr15:28508036-28508317(-)$1	1	122	141	11.8139
..(((((.....)))))..	chr7:2278952-2279192(-)$1	1	52	71	9.9513
(((.(((.....)))))))	chr12:56705012-56705257(-)$1	1	86	105	10.6361
(((((((.....))))).)	chr11:65402390-65402690(+)$1	1	170	189	9.6833
.((.(((.....))).)))	chr9:19378793-19378996(-)$1	1	41	60	11.6390
(((((((.....)))))))	chr4:84393290-84393535(-)$1	1	205	224	11.4312
(((((((.....)))))))	chr6:74227864-74228069(-)$1	1	51	70	11.4312
.((.(((.....))).)))	chr9:19378803-19379010(-)$1	1	55	74	11.6390
.((((((.....)))))).	chr12:25260648-25260895(+)$1	1	16	35	9.6629
(((((((.....)))))))	chr6:74227857-74228064(-)$1	1	46	65	11.4312
(((((((.....)))))))	chr3:131221473-131221718(-)$1	1	200	219	11.8139
.((.(((.....))).)))	chr9:19378749-19378959(-)$1	1	4	23	11.6390
.((((((.....)))))))	chr1:47124264-47124510(-)$1	1	22	41	9.6625
(((((((.....)))))))	chrX:118603816-118604052(+)$1	1	62	81	11.4312
(((((((.....)))))))	chr17:40642549-40642755(+)$1	1	177	196	11.8139
(((((((.....)))))))	chr2:130940245-130940449(+)$1	1	123	142	11.6364
(((((((.....)))))))	chr2:130940170-130940445(+)$1	1	198	217	11.6364
..(((((.....)))))..	chr6:32942411-32942625(+)$1	1	116	135	9.9513
.((.(((.....))).)))	chr9:19378766-19378983(-)$1	1	28	47	11.6390
(((((((.....)))).))	chr2:132241627-132241859(-)$1	1	174	193	9.8883
.(..(((.....)))..).	chr6:35438405-35438619(+)$1	1	0	19	9.2732
(((.(((.....))).)))	chr8:48874560-48874774(+)$1	1	119	138	11.8555
(((((((.....)))))))	chrX:118603782-118604001(+)$1	1	96	115	11.4312
(((((((.....)))))))	chr2:132249347-132249629(-)$1	1	201	220	11.6364
.(((.((.....))))).)	chr11:86048369-86048676(+)$1	1	183	202	10.6398
(((((((.....)))))))	chrX:118603801-118604016(+)$1	1	77	96	11.4312
(((.(((.....)))))..	chr12:111885356-111885618(+)$1	1	43	62	10.6775
(((((((.....)))))))	chr6:74227976-74228204(-)$1	1	186	205	12.2294
(((((.(.....).)))))	chr6:31832515-31832770(-)$1	1	108	127	11.4398
(((((((.....)))).))	chr2:130947973-130948203(+)$1	1	174	193	10.8504
(((.(((.....))))))(	chr4:152024046-152024272(+)$1	1	11	30	11.5930
(((((((.....)))).))	chr2:132241659-132241891(-)$1	1	206	225	10.8504
((.(.((.....)).))).	chr8:144102630-144102832(+)$1	1	146	165	9.6669
(((((((......))))))	chr6:4116015-4116258(-)$1	1	173	192	7.4818
(((((((.....))))).)	chr4:152024028-152024246(+)$1	1	59	78	9.8141
((..(((.....)))..))	chr5:179992754-179993007(+)$1	1	5	24	10.8147
(((((((.....))).)))	chr17:26677421-26677682(-)$1	1	157	176	10.8368
(((((((.....)))))))	chr1:109778590-109778828(+)$1	1	34	53	11.4312
(((((((.....)))))))	chr17:40642518-40642749(+)$1	1	208	227	11.8139
((.((((.....))))..)	chr22:19711290-19711563(+)$1	1	99	118	9.6813
(((((((.....)))).))	chr2:130947941-130948173(+)$1	1	206	225	10.8504
(..((((.....))))..)	chr6:32942405-32942611(+)$1	1	44	63	9.7135
...((((.....)))))))	chr9:140446425-140446714(+)$1	1	198	217	9.8814
..(((((.....))))).)	chr6:32011424-32011682(-)$1	1	121	140	10.3316
(((((((.....))))).)	chr4:152024072-152024284(+)$1	1	15	34	9.8141
.((.(((.....))).)))	chr9:19378796-19379003(-)$1	1	48	67	11.6390
.((.(((.....))).)))	chr9:19378810-19379016(-)$1	1	61	80	11.6390
(((((((.....)))))))	chr1:109778576-109778790(+)$1	1	48	67	11.4312
((.(.((.....)).))).	chr8:144102632-144102864(+)$1	1	144	163	9.6669
((.((((.....)))).))	chr9:95032065-95032304(-)$1	1	62	81	10.1334
((.(.((.....)).).))	chr9:19379384-19379593(-)$1	1	144	163	9.7978

#PSSM
h : 0.19	[ : 0.17	g : 0.15	f : 0.07	b : 0.07	d : 0.06	i : 0.04	! : 0.04	= : 0.04	: : 0.03	c : 0.03	e : 0.03	" : 0.01	
b : 0.20	h : 0.19	g : 0.14	f : 0.11	d : 0.06	! : 0.06	i : 0.04	= : 0.04	c : 0.04	e : 0.03	[ : 0.01	a : 0.01	" : 0.01	
h : 0.19	b : 0.15	g : 0.14	[ : 0.09	e : 0.09	f : 0.07	! : 0.06	i : 0.04	= : 0.04	c : 0.04	d : 0.01	" : 0.01	
h : 0.19	[ : 0.19	d : 0.14	g : 0.09	e : 0.09	f : 0.06	i : 0.04	! : 0.04	= : 0.04	a : 0.04	b : 0.01	c : 0.01	
c : 0.25	h : 0.17	d : 0.14	[ : 0.09	g : 0.09	e : 0.09	i : 0.04	f : 0.04	= : 0.04	
c : 0.25	h : 0.17	d : 0.14	b : 0.09	e : 0.09	g : 0.07	i : 0.04	f : 0.04	= : 0.04	[ : 0.01	
c : 0.25	h : 0.17	d : 0.14	b : 0.09	e : 0.09	g : 0.07	i : 0.04	f : 0.04	= : 0.04	a : 0.01	
n : 0.96	o : 0.03	
n : 0.96	o : 0.03	
n : 0.96	o : 0.03	
n : 0.96	o : 0.03	
n : 0.96	o : 0.03	
c : 0.25	h : 0.17	d : 0.14	b : 0.09	e : 0.09	g : 0.07	f : 0.04	= : 0.04	o : 0.03	i : 0.01	a : 0.01	
c : 0.25	h : 0.17	d : 0.14	b : 0.09	e : 0.09	g : 0.07	i : 0.04	f : 0.04	= : 0.04	] : 0.01	
c : 0.26	h : 0.19	d : 0.14	g : 0.09	e : 0.09	i : 0.04	f : 0.04	= : 0.04	] : 0.04	b : 0.01	
h : 0.19	d : 0.17	] : 0.15	g : 0.09	e : 0.09	i : 0.04	f : 0.04	= : 0.04	a : 0.04	b : 0.03	2 : 0.03	c : 0.03	
h : 0.19	b : 0.17	] : 0.12	e : 0.11	g : 0.09	f : 0.06	2 : 0.06	i : 0.04	= : 0.04	c : 0.04	d : 0.03	
h : 0.19	g : 0.15	b : 0.15	f : 0.11	] : 0.07	d : 0.06	2 : 0.06	i : 0.04	= : 0.04	c : 0.03	a : 0.01	4 : 0.01	e : 0.01	
h : 0.19	d : 0.17	g : 0.15	f : 0.06	e : 0.06	i : 0.04	2 : 0.04	b : 0.04	c : 0.04	= : 0.04	4 : 0.04	: : 0.03	] : 0.01	a : 0.01	

#score	676.0801702382248
#seq	63
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_UTR_m2_run2.txt

#BEAR
eeeeeeeeeeooooooeeeeeBB}G	chr16:89350205-89350484(-)$1	279	99	124	10.1296
cc"""eeeeennnnneeeee]ccc]	chr3:127324871-127325147(+)$1	276	219	244	14.2744
b####eeeeennnnneeeee4444b	chr3:193332684-193332932(+)$1	248	51	76	13.9864
dd"""eeeeellleeeee4444ddd	chr11:10828699-10828957(-)$1	258	220	245	11.7029
c:bb[eeeeennnnneeeee]bbdd	chr11:61077670-61077952(-)$1	282	121	146	11.8215
ddd[ffffffooooooffffff]dd	chr2:96950909-96951143(-)$1	234	140	165	8.6912
eeeeeeeeeeooooooeeeee5555	chr3:47887925-47888212(+)$1	287	181	206	10.6280
ddd!!eeeeeooooooeeeee]ddd	chr6:101328924-101329294(-)$1	370	37	62	14.1443
ccc!!eeeeeooooooeeeeeccc:	chr5:10258122-10258361(+)$1	239	2	27	14.0324
CCbb[eeeeeooooooeeeee]bb:	chr3:184044656-184044871(+)$1	215	14	39	11.3174
cc"""eeeeeooooooeeeee]ccc	chr19:49607819-49608070(+)$1	251	5	30	15.2385
ccaa[eeeeellleeeee]a]a]cc	chr11:70279108-70279398(+)$1	290	64	89	11.8657
==========oooooo=========	chr3:184045564-184045821(+)$1	257	163	188	10.0297
==========oooooo=========	chr3:184045621-184045837(+)$1	216	106	131	10.0297
!!a!!eeeeemmmmeeeee22a]ee	chr12:56565456-56565716(-)$1	260	34	59	11.3788
ccc!!eeeeennnnneeeee22ccc	chr19:19115044-19115322(-)$1	278	160	185	13.7579
iiii[eeeeellleeeee]iiiiii	chr5:154135166-154135405(+)$1	239	121	146	11.2680
e[a!!eeeeennnnneeeee22a]e	chr19:15512111-15512411(-)$1	300	229	254	13.7359
eeee[eeeeemmmmeeeee]eeeee	chr10:129924262-129924530(-)$1	268	118	143	10.6690
eeee[eeeeellleeeeeeeeee]b	chr8:17780304-17780569(+)$1	265	8	33	11.8305
g]bb:eeeeeooooooeeeeeccc!	chr5:138269390-138269635(+)$1	245	97	122	11.9522
ccc!!eeeeerrrrrrrrreeeee2	chr3:184040919-184041126(+)$1	207	175	200	9.7748
eeee[eeeeemmmmeeeeeeeeee:	chr3:48638684-48638980(-)$1	296	62	87	10.4402
cc"""eeeeennnnneeeee22ccc	chr2:114691773-114692047(+)$1	274	98	123	14.0860
dd"""eeeeennnnneeeee]dddd	chr17:4578033-4578317(-)$1	284	130	155	13.5190
d####eeeeeooooooeeeee4444	chrX:153582521-153582753(-)$1	232	114	139	15.3283
ff"""eeeeellleeeee22fffff	chr9:123201806-123202062(-)$1	256	63	88	10.8913
fff!!eeeeellleeeee333ffff	chr16:70589997-70590248(+)$1	251	19	44	10.9797
eee!!eeeeellleeeeeeeeee22	chr20:524286-524530(-)$1	244	48	73	12.1901
::bb[eeeeeooooooeeeee]bb:	chr5:71482370-71482622(+)$1	252	137	162	11.4275
b[bb[eeeeeooooooeeeee22bb	chr7:39989889-39990175(+)$1	286	242	267	13.3551
))ccceeeeeooooooeeeee]ccc	chr3:184035433-184035684(+)$1	251	81	106	12.8804
ccc[eeeeeannnnna]eeeee]cc	chr19:19021679-19021905(-)$1	226	34	59	11.9170
$$$$$eeeeennnnneeeee]bb]b	chr3:47887137-47887425(+)$1	288	144	169	12.5107
dddgggggggooooooggggggg33	chr17:33998771-33999019(+)$1	248	216	241	9.5444
!bb!!a[eeeeellleeeee]a]bb	chr5:154173652-154173898(+)$1	246	114	139	10.3789
[ccc[eeeeeooooooeeeeeccc]	chr21:38445469-38445738(+)$1	269	188	213	14.2872
ddbb[eeeeennnnneeeee]bb]d	chr17:26941902-26942174(-)$1	272	226	251	12.7037
eee!!eeeeennnnneeeeeeeeee	chr14:31676628-31676897(-)$1	269	208	233	13.3511
GGGa[eeeeennnnneeeee]aeee	chr21:34883538-34883794(-)$1	256	81	106	11.6925
ee"""eeeeennnnneeeee]eeee	chr15:28501230-28501528(-)$1	298	259	284	13.8300
hhhhh[eeeeennnnneeeee4444	chr9:379752-380036(+)$1	284	140	165	10.5809
ee####eeeeennnnneeeee4444	chr5:131893012-131893246(+)$1	234	58	83	12.5911
b"""ffffffooooooffffff333	chr19:41800145-41800394(+)$1	249	43	68	9.9465
c!!a[eeeeeooooooeeeeea22c	chr11:70189769-70190073(+)$1	304	23	48	14.5396
[ccc[eeeeemmmmeeeeeccca]b	chr7:99698820-99699108(-)$1	288	47	72	10.8464
:ddddeeeeeooooooeeeee333d	chr5:140907921-140908172(-)$1	251	155	180	12.6828
d"""eeeeeaooooooa]eeeee44	chr5:140998361-140998583(-)$1	222	43	68	12.7744
ee"""eeeeemmmmeeeeeeeeee]	chr6:31760678-31760922(-)$1	244	201	226	12.1564
ff!!ffffffoooooofffffffff	chr20:56099983-56100290(-)$1	307	232	257	8.9061
ccc[ccceeeeellleeeee22ccc	chr4:3076341-3076626(+)$1	285	72	97	10.0265
###gggggggooooooggggggg33	chrX:153236480-153236812(-)$1	332	123	148	10.0186
[ccc[eeeeemmmmeeeee]ccc]a	chr11:111896066-111896327(+)$1	261	26	51	11.1215
::bb[eeeeeooooooeeeee]bbd	chr21:45741546-45741806(+)$1	260	131	156	12.0369
ffff[eeeeennnnneeeeefffff	chr2:96940525-96940778(-)$1	253	197	222	12.2144

#otherMatches

#Seq PSSM
GGACAGCUGGGACUCGCCAGUGACA	chr16:89350205-89350484(-)$1	279	99	124	10.1296
GGCCAUGUACCCCAAGUACGACCGC	chr3:127324871-127325147(+)$1	276	219	244	14.2744
GGAAUUUUUGGCCAGCAAGAUUAGC	chr3:193332684-193332932(+)$1	248	51	76	13.9864
GCAAAUAAGUCCGACUUAAUGGGCU	chr11:10828699-10828957(-)$1	258	220	245	11.7029
GACCUCCUUUGGAGAAGAGGUGGAG	chr11:61077670-61077952(-)$1	282	121	146	11.8215
CAGAGUUUGCCAUCCUGCGAAUGCU	chr2:96950909-96951143(-)$1	234	140	165	8.6912
GGGCUUCCAGGUGCGGUUGGAAAGU	chr3:47887925-47888212(+)$1	287	181	206	10.6280
GCCGACGUUGGCGCUGCAGCGGGGC	chr6:101328924-101329294(-)$1	370	37	62	14.1443
GUUUGAUUUAUAUCUUUGAGUAACA	chr5:10258122-10258361(+)$1	239	2	27	14.0324
UCAGAAGCUGCUCGCCCAGCUACUA	chr3:184044656-184044871(+)$1	215	14	39	11.3174
GGCCUGUCCUGACUAGAGGACCCUC	chr19:49607819-49608070(+)$1	251	5	30	15.2385
GGCCCCGUGCCAUGUGCGUGUGACC	chr11:70279108-70279398(+)$1	290	64	89	11.8657
GGGGCAGCUGCUGCACCAGCUGCUC	chr3:184045564-184045821(+)$1	257	163	188	10.0297
GGGGCAGCUGCUGCACCAGCUGCUC	chr3:184045621-184045837(+)$1	216	106	131	10.0297
GAGCAUGUGGGAAGCCGCACACAGG	chr12:56565456-56565716(-)$1	260	34	59	11.3788
CUGAGGGCAGCACCCCUGCCGACGG	chr19:19115044-19115322(-)$1	278	160	185	13.7579
CCCGGCUUCUCCGGGGGGGCGGGCG	chr5:154135166-154135405(+)$1	239	121	146	11.2680
CGCAUGUGGGAAGACCCCAUGGGGG	chr19:15512111-15512411(-)$1	300	229	254	13.7359
CUUGACGAGCGGUGGUUCGACAAGU	chr10:129924262-129924530(-)$1	268	118	143	10.6690
UUUUCGGCUUAAAGAGCCAGAAGCG	chr8:17780304-17780569(+)$1	265	8	33	11.8305
UAGGUGGACAGCGCCAUGUCCCUGA	chr5:138269390-138269635(+)$1	245	97	122	11.9522
GCCCGCGGGGAGGGGUUUGCCCUGG	chr3:184040919-184041126(+)$1	207	175	200	9.7748
CACUGUCUGUCUCAGCAGGAGUGGA	chr3:48638684-48638980(-)$1	296	62	87	10.4402
CUGCAUCUUGGACCUCAAGACAAGU	chr2:114691773-114692047(+)$1	274	98	123	14.0860
GGAAUGCUUCAGGGAGGAGCCUCUG	chr17:4578033-4578317(-)$1	284	130	155	13.5190
GGCAAGGUGGCGCAGCCCACCAUCA	chrX:153582521-153582753(-)$1	232	114	139	15.3283
CAAAAGCACUCCCAGUGCAGUGAGG	chr9:123201806-123202062(-)$1	256	63	88	10.8913
GUGAAUUGGAGCAUCUAGACCCAUC	chr16:70589997-70590248(+)$1	251	19	44	10.9797
CCCGCCUCCUGGUAGGAGGGGGUUU	chr20:524286-524530(-)$1	244	48	73	12.1901
AUACCGGAGAGCUCAUUCUCCAGUC	chr5:71482370-71482622(+)$1	252	137	162	11.4275
GUGCUCGGUGUCCCUCCGCCGCCGC	chr7:39989889-39990175(+)$1	286	242	267	13.3551
CAUACGUUGUCCCGACACAGCAGUA	chr3:184035433-184035684(+)$1	251	81	106	12.8804
GGUGUGGUCCUGGAUGAGAUCAAGC	chr19:19021679-19021905(-)$1	226	34	59	11.9170
ACCAUGCACCAUCCAGGUGCCCGAG	chr3:47887137-47887425(+)$1	288	144	169	12.5107
UUGUGUUACUUCUACUGGUAAUAAA	chr17:33998771-33999019(+)$1	248	216	241	9.5444
ACCGAGCUUUACAGUGUGGAUCAGG	chr5:154173652-154173898(+)$1	246	114	139	10.3789
GGCCCGGGUGAGUGCACACCCGGCG	chr21:38445469-38445738(+)$1	269	188	213	14.2872
CCUGGUCUGUUCGCUGCAGGGCAUG	chr17:26941902-26942174(-)$1	272	226	251	12.7037
GGCUUCUUGGGAACUCUAGGGCCGC	chr14:31676628-31676897(-)$1	269	208	233	13.3511
ACACCUCUCUGAGGAAGAGAUGGCC	chr21:34883538-34883794(-)$1	256	81	106	11.6925
GGCCCGGGCACUCUCUGCUCUCCUG	chr15:28501230-28501528(-)$1	298	259	284	13.8300
GUCUUCCGCCUGCCAGAGGUGCAAA	chr9:379752-380036(+)$1	284	140	165	10.5809
GACAAAGAUAAGCAAAUUAUCACUU	chr5:131893012-131893246(+)$1	234	58	83	12.5911
ccaaguggUGCCAUACCACCAUGCC	chr19:41800145-41800394(+)$1	249	43	68	9.9465
CAGGAUUGGGAACGUGCCCAGCAAG	chr11:70189769-70190073(+)$1	304	23	48	14.5396
ACGCAGUGGCGCCGGUCACGUGGGG	chr7:99698820-99699108(-)$1	288	47	72	10.8464
GGGGCAGUUUGGAAUGAAGCUAGAG	chr5:140907921-140908172(-)$1	251	155	180	12.6828
CGGAGCUGCCAGGCGGGAGCGGCGU	chr5:140998361-140998583(-)$1	222	43	68	12.7744
AGACCUCACUGUAGGGUGACUGAGA	chr6:31760678-31760922(-)$1	244	201	226	12.1564
CACCUGCUCUCCUCCAAGAGCAUGG	chr20:56099983-56100290(-)$1	307	232	257	8.9061
GGGACGGGUCCAAGAUGGACGGCCG	chr4:3076341-3076626(+)$1	285	72	97	10.0265
GGGCUCCGCCAUUUCCGGCGGGGGA	chrX:153236480-153236812(-)$1	332	123	148	10.0186
GACAACGUGCGGCUGUGCGGUGUGG	chr11:111896066-111896327(+)$1	261	26	51	11.1215
UCGGCGGUGCGGACCGGCAUCUCCC	chr21:45741546-45741806(+)$1	260	131	156	12.0369
UCCAGUGACAGCAGGUGUCAUGGGU	chr2:96940525-96940778(-)$1	253	197	222	12.2144

#DB
)))))(((((......))))))).)	chr16:89350205-89350484(-)$1	1	99	124	10.1296
((...(((((.....))))).))).	chr3:127324871-127325147(+)$1	1	219	244	14.2744
(....(((((.....)))))....)	chr3:193332684-193332932(+)$1	1	51	76	13.9864
((...(((((...)))))....)))	chr11:10828699-10828957(-)$1	1	220	245	11.7029
).((.(((((.....))))).))((	chr11:61077670-61077952(-)$1	1	121	146	11.8215
(((.((((((......)))))).))	chr2:96950909-96951143(-)$1	1	140	165	8.6912
((((((((((......)))))....	chr3:47887925-47888212(+)$1	1	181	206	10.6280
(((..(((((......))))).)))	chr6:101328924-101329294(-)$1	1	37	62	14.1443
(((..(((((......)))))))).	chr5:10258122-10258361(+)$1	1	2	27	14.0324
((((.(((((......))))).)).	chr3:184044656-184044871(+)$1	1	14	39	11.3174
((...(((((......))))).)))	chr19:49607819-49608070(+)$1	1	5	30	15.2385
((((.(((((...))))).).).))	chr11:70279108-70279398(+)$1	1	64	89	11.8657
((((((((((......)))))))))	chr3:184045564-184045821(+)$1	1	163	188	10.0297
((((((((((......)))))))))	chr3:184045621-184045837(+)$1	1	106	131	10.0297
..(..(((((....)))))..).))	chr12:56565456-56565716(-)$1	1	34	59	11.3788
(((..(((((.....)))))..)))	chr19:19115044-19115322(-)$1	1	160	185	13.7579
((((.(((((...))))).))))))	chr5:154135166-154135405(+)$1	1	121	146	11.2680
(.(..(((((.....)))))..).)	chr19:15512111-15512411(-)$1	1	229	254	13.7359
((((.(((((....))))).)))))	chr10:129924262-129924530(-)$1	1	118	143	10.6690
((((.(((((...)))))))))).)	chr8:17780304-17780569(+)$1	1	8	33	11.8305
).)).(((((......)))))(((.	chr5:138269390-138269635(+)$1	1	97	122	11.9522
(((..(((((.........))))).	chr3:184040919-184041126(+)$1	1	175	200	9.7748
((((.(((((....)))))))))).	chr3:48638684-48638980(-)$1	1	62	87	10.4402
((...(((((.....)))))..)))	chr2:114691773-114692047(+)$1	1	98	123	14.0860
((...(((((.....))))).))))	chr17:4578033-4578317(-)$1	1	130	155	13.5190
(....(((((......)))))....	chrX:153582521-153582753(-)$1	1	114	139	15.3283
((...(((((...)))))..)))))	chr9:123201806-123202062(-)$1	1	63	88	10.8913
(((..(((((...)))))...))))	chr16:70589997-70590248(+)$1	1	19	44	10.9797
(((..(((((...))))))))))..	chr20:524286-524530(-)$1	1	48	73	12.1901
..((.(((((......))))).)).	chr5:71482370-71482622(+)$1	1	137	162	11.4275
(.((.(((((......)))))..))	chr7:39989889-39990175(+)$1	1	242	267	13.3551
..((((((((......))))).)))	chr3:184035433-184035684(+)$1	1	81	106	12.8804
(((.((((((.....).))))).))	chr19:19021679-19021905(-)$1	1	34	59	11.9170
.....(((((.....))))).)).)	chr3:47887137-47887425(+)$1	1	144	169	12.5107
((((((((((......)))))))..	chr17:33998771-33999019(+)$1	1	216	241	9.5444
.((..(.(((((...))))).).))	chr5:154173652-154173898(+)$1	1	114	139	10.3789
.(((.(((((......)))))))).	chr21:38445469-38445738(+)$1	1	188	213	14.2872
((((.(((((.....))))).)).)	chr17:26941902-26942174(-)$1	1	226	251	12.7037
(((..(((((.....))))))))))	chr14:31676628-31676897(-)$1	1	208	233	13.3511
((((.(((((.....))))).)(((	chr21:34883538-34883794(-)$1	1	81	106	11.6925
((...(((((.....))))).))))	chr15:28501230-28501528(-)$1	1	259	284	13.8300
(((((.(((((.....)))))....	chr9:379752-380036(+)$1	1	140	165	10.5809
((....(((((.....)))))....	chr5:131893012-131893246(+)$1	1	58	83	12.5911
(...((((((......))))))...	chr19:41800145-41800394(+)$1	1	43	68	9.9465
(..(.(((((......))))))..)	chr11:70189769-70190073(+)$1	1	23	48	14.5396
.(((.(((((....))))))))).)	chr7:99698820-99699108(-)$1	1	47	72	10.8464
.(((((((((......)))))...)	chr5:140907921-140908172(-)$1	1	155	180	12.6828
(...((((((......).)))))..	chr5:140998361-140998583(-)$1	1	43	68	12.7744
((...(((((....)))))))))).	chr6:31760678-31760922(-)$1	1	201	226	12.1564
((..((((((......)))))))))	chr20:56099983-56100290(-)$1	1	232	257	8.9061
(((.((((((((...)))))..)))	chr4:3076341-3076626(+)$1	1	72	97	10.0265
...(((((((......)))))))..	chrX:153236480-153236812(-)$1	1	123	148	10.0186
.(((.(((((....))))).))).)	chr11:111896066-111896327(+)$1	1	26	51	11.1215
..((.(((((......))))).))(	chr21:45741546-45741806(+)$1	1	131	156	12.0369
((((.(((((.....))))))))))	chr2:96940525-96940778(-)$1	1	197	222	12.2144

#PSSM
e : 0.20	c : 0.20	d : 0.14	f : 0.07	b : 0.05	: : 0.05	[ : 0.05	= : 0.03	! : 0.03	C : 0.01	i : 0.01	g : 0.01	) : 0.01	$ : 0.01	G : 0.01	h : 0.01	# : 0.01	
c : 0.21	e : 0.18	d : 0.12	f : 0.07	# : 0.05	: : 0.05	= : 0.03	! : 0.03	[ : 0.03	" : 0.03	C : 0.01	i : 0.01	] : 0.01	) : 0.01	$ : 0.01	b : 0.01	G : 0.01	h : 0.01	
" : 0.18	c : 0.16	b : 0.14	e : 0.12	# : 0.07	d : 0.07	a : 0.05	= : 0.03	f : 0.03	! : 0.03	i : 0.01	$ : 0.01	G : 0.01	h : 0.01	
! : 0.20	" : 0.18	b : 0.12	e : 0.09	c : 0.07	# : 0.05	[ : 0.05	a : 0.05	= : 0.03	g : 0.03	i : 0.01	$ : 0.01	h : 0.01	d : 0.01	f : 0.01	
[ : 0.30	! : 0.18	" : 0.14	e : 0.07	# : 0.05	f : 0.05	= : 0.03	c : 0.03	g : 0.03	: : 0.01	$ : 0.01	h : 0.01	d : 0.01	
e : 0.80	f : 0.05	= : 0.03	g : 0.03	a : 0.01	[ : 0.01	# : 0.01	c : 0.01	
e : 0.83	f : 0.05	= : 0.03	g : 0.03	[ : 0.01	c : 0.01	
e : 0.87	f : 0.05	= : 0.03	g : 0.03	
e : 0.87	f : 0.05	= : 0.03	g : 0.03	
e : 0.83	f : 0.05	= : 0.03	a : 0.03	g : 0.03	
o : 0.41	n : 0.25	l : 0.12	m : 0.10	e : 0.07	r : 0.01	
o : 0.41	n : 0.29	l : 0.12	m : 0.10	e : 0.03	r : 0.01	
o : 0.41	n : 0.29	l : 0.16	m : 0.10	r : 0.01	
o : 0.41	n : 0.29	e : 0.12	m : 0.10	l : 0.03	r : 0.01	
o : 0.41	n : 0.29	e : 0.23	l : 0.03	r : 0.01	
e : 0.50	o : 0.41	n : 0.03	r : 0.01	a : 0.01	
e : 0.81	f : 0.05	= : 0.03	g : 0.03	r : 0.01	] : 0.01	a : 0.01	
e : 0.83	f : 0.05	= : 0.03	g : 0.03	r : 0.01	] : 0.01	
e : 0.76	f : 0.05	] : 0.03	= : 0.03	g : 0.03	4 : 0.01	r : 0.01	2 : 0.01	3 : 0.01	
e : 0.70	f : 0.05	= : 0.03	2 : 0.03	] : 0.03	g : 0.03	4 : 0.01	a : 0.01	i : 0.01	3 : 0.01	c : 0.01	
e : 0.47	] : 0.16	f : 0.09	2 : 0.09	4 : 0.03	= : 0.03	g : 0.03	c : 0.03	i : 0.01	3 : 0.01	
e : 0.18	c : 0.10	f : 0.10	] : 0.10	4 : 0.09	a : 0.09	2 : 0.09	b : 0.05	= : 0.03	g : 0.03	B : 0.01	5 : 0.01	i : 0.01	d : 0.01	3 : 0.01	
c : 0.18	e : 0.18	b : 0.10	] : 0.09	4 : 0.07	f : 0.07	d : 0.05	= : 0.03	a : 0.03	2 : 0.03	g : 0.03	3 : 0.03	B : 0.01	5 : 0.01	i : 0.01	
c : 0.20	e : 0.14	] : 0.10	4 : 0.09	d : 0.09	b : 0.09	f : 0.07	3 : 0.07	= : 0.03	2 : 0.03	} : 0.01	5 : 0.01	i : 0.01	
d : 0.14	c : 0.14	b : 0.10	e : 0.10	: : 0.07	4 : 0.07	f : 0.07	] : 0.05	3 : 0.05	= : 0.03	2 : 0.03	G : 0.01	5 : 0.01	i : 0.01	! : 0.01	a : 0.01	

#score	658.0166341830112
#seq	55
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF656IDO_XRCC6_transcript_m3_run2.txt

#BEAR
ffffffmmmmffffff	chr1:156347478-156347685(+)$1	207	157	173	10.7076
ffffff[bb[ffffff	chr2:101485812-101486064(+)$1	252	58	74	7.4013
ffffffooooooffff	chr1:202741743-202741996(-)$1	253	232	248	9.9863
ffffffmmmmffffff	chr11:2671810-2672052(-)$1	242	22	38	10.7076
ffffff==========	chr7:92284115-92284332(-)$1	217	136	152	6.5096
ffffffmmmmffffff	chr5:140105697-140105930(+)$1	233	171	187	10.7076
ffffffnnnnnfffff	chr2:216279114-216279368(-)$1	254	190	206	9.2035
ccc]bb4444ffffff	chr2:85546235-85546449(-)$1	214	103	119	6.5291
ffff[ammmma]ffff	chr8:22267347-22267629(+)$1	282	78	94	9.0493
:fffffflllffffff	chrX:132742051-132742310(-)$1	259	209	225	9.0550
ffffffmmmmffffff	chr1:156347485-156347722(+)$1	237	150	166	10.7076
ffffffooooooffff	chr2:97492725-97492975(+)$1	250	108	124	9.9863
ffffffooooooffff	chr22:38006659-38006920(+)$1	261	17	33	9.9863
fffffflllffffff3	chr17:57915201-57915472(+)$1	271	71	87	9.5198
ffffffmmmmffffff	chr3:171523677-171523889(-)$1	212	22	38	10.7076
ffffffooooooffff	chr11:65206471-65206715(+)$1	244	142	158	9.9863
ffffffooooooffff	chr11:65206515-65206741(+)$1	226	98	114	9.9863
ggggggglllgggggg	chr9:134363483-134363745(+)$1	262	188	204	6.0887
ffffffbb22ffffff	chr17:7411145-7411393(+)$1	248	195	211	7.3344
$fffffflllffffff	chr2:42423843-42424116(+)$1	273	231	247	9.8070
ccc]bb4444ffffff	chr2:85546249-85546464(-)$1	215	118	134	6.5291
:fffffflllffffff	chr9:134295967-134296228(+)$1	261	227	243	9.0550
Ffffffflllffffff	chr12:27074506-27074752(-)$1	246	50	66	10.1171
ffffffooooooffff	chrX:133013479-133013756(-)$1	277	184	200	9.9863
ffffffooooooffff	chr16:50600695-50600940(+)$1	245	59	75	9.9863
ffffffmmmmffffff	chr14:23537103-23537356(-)$1	253	124	140	10.7076
ffffffmmmmffffff	chr6:159047173-159047424(+)$1	251	196	212	10.7076
ggggggmmmmgggggg	chr3:171846878-171847121(+)$1	243	196	212	6.2471
fff[bbmmmmbb]fff	chr17:58319724-58319933(-)$1	209	181	197	7.4101
ggggggmmmmgggggg	chr7:26239454-26239708(-)$1	254	220	236	6.2471
ffffffnnnnnfffff	chr3:185817056-185817293(-)$1	237	0	16	9.2035
ffffffmmmmffffff	chr5:140105676-140105897(+)$1	221	192	208	10.7076
[fffffflllffffff	chr1:8829460-8829714(-)$1	254	172	188	10.2266
ffffffnnnnnfffff	chr17:18965299-18965552(+)$1	253	96	112	9.2035
ffffffcccffffff2	chr8:17766069-17766339(-)$1	270	214	230	6.8927
ffffffff22ffffff	chr3:185817093-185817303(-)$1	210	118	134	7.5329
ffffffmmmmffffff	chr6:32941576-32941838(+)$1	262	29	45	10.7076
ffffffmmmmffffff	chr2:198299324-198299574(-)$1	250	102	118	10.7076
[fffffflllffffff	chr14:31644429-31644694(-)$1	265	81	97	10.2266
ffffffmmmmffffff	chr14:23779491-23779743(+)$1	252	50	66	10.7076

#otherMatches

#Seq PSSM
AGGAGCUUGAGCUCCU	chr1:156347478-156347685(+)$1	207	157	173	10.7076
uuuugaaggcuggguu	chr2:101485812-101486064(+)$1	252	58	74	7.4013
UUAGAAGUUUGUUUCU	chr1:202741743-202741996(-)$1	253	232	248	9.9863
AUGCUGUUAGCAGUAU	chr11:2671810-2672052(-)$1	242	22	38	10.7076
caggcuuuuuucuguc	chr7:92284115-92284332(-)$1	217	136	152	6.5096
uccaggguuucuugga	chr5:140105697-140105930(+)$1	233	171	187	10.7076
UUUUCAUAAUUUGAAA	chr2:216279114-216279368(-)$1	254	190	206	9.2035
ccugccaauagagcga	chr2:85546235-85546449(-)$1	214	103	119	6.5291
UAGAGGCCCUCGUCUG	chr8:22267347-22267629(+)$1	282	78	94	9.0493
UGGGGCUUUUGGCCCC	chrX:132742051-132742310(-)$1	259	209	225	9.0550
AGGAGCUUGAGCUCCU	chr1:156347485-156347722(+)$1	237	150	166	10.7076
GAGGACUUCUGUGUUC	chr2:97492725-97492975(+)$1	250	108	124	9.9863
ggcgugagccaccgcg	chr22:38006659-38006920(+)$1	261	17	33	9.9863
GACUUCUGAGAAGUCA	chr17:57915201-57915472(+)$1	271	71	87	9.5198
aguagguaaucuuauu	chr3:171523677-171523889(-)$1	212	22	38	10.7076
agcaccuuugcuggug	chr11:65206471-65206715(+)$1	244	142	158	9.9863
agcaccuuugcuggug	chr11:65206515-65206741(+)$1	226	98	114	9.9863
acagagucucgcucug	chr9:134363483-134363745(+)$1	262	188	204	6.0887
AUACCAGGUGCCAAAU	chr17:7411145-7411393(+)$1	248	195	211	7.3344
CUACUUUGAAAAAGUA	chr2:42423843-42424116(+)$1	273	231	247	9.8070
ccugccaauagagcga	chr2:85546249-85546464(-)$1	215	118	134	6.5291
CGUAGGGAGCCUCUGC	chr9:134295967-134296228(+)$1	261	227	243	9.0550
gcaggagaaucucuug	chr12:27074506-27074752(-)$1	246	50	66	10.1171
ggugugagccaccaca	chrX:133013479-133013756(-)$1	277	184	200	9.9863
GGUUGAUGAUUUUUAA	chr16:50600695-50600940(+)$1	245	59	75	9.9863
CCUCCAUCCCUGGAGG	chr14:23537103-23537356(-)$1	253	124	140	10.7076
CCAGGUAAUUGCUUGG	chr6:159047173-159047424(+)$1	251	196	212	10.7076
GAUGGACUGAUCCAUU	chr3:171846878-171847121(+)$1	243	196	212	6.2471
GGUUAUUUUUAUUAUC	chr17:58319724-58319933(-)$1	209	181	197	7.4101
CGGGUUUGCGGGCCCG	chr7:26239454-26239708(-)$1	254	220	236	6.2471
GCUGCCCUUGAGGCAG	chr3:185817056-185817293(-)$1	237	0	16	9.2035
uccaggguuucuugga	chr5:140105676-140105897(+)$1	221	192	208	10.7076
UGAUGUGUUUUACAUC	chr1:8829460-8829714(-)$1	254	172	188	10.2266
cucuccguauugggga	chr17:18965299-18965552(+)$1	253	96	112	9.2035
uggaauucucaggcaa	chr8:17766069-17766339(-)$1	270	214	230	6.8927
GACAAGUGCCAGGCAU	chr3:185817093-185817303(-)$1	210	118	134	7.5329
CGGGCUGUGAAGUCUG	chr6:32941576-32941838(+)$1	262	29	45	10.7076
GCUACUUCAGAGUAGC	chr2:198299324-198299574(-)$1	250	102	118	10.7076
uauguuuuguagacau	chr14:31644429-31644694(-)$1	265	81	97	10.2266
GCACUUUCCAAGGUGC	chr14:23779491-23779743(+)$1	252	50	66	10.7076

#DB
((((((....))))))	chr1:156347478-156347685(+)$1	1	157	173	10.7076
((((((.((.((((((	chr2:101485812-101486064(+)$1	1	58	74	7.4013
((((((......))))	chr1:202741743-202741996(-)$1	1	232	248	9.9863
((((((....))))))	chr11:2671810-2672052(-)$1	1	22	38	10.7076
))))))))))))))))	chr7:92284115-92284332(-)$1	1	136	152	6.5096
((((((....))))))	chr5:140105697-140105930(+)$1	1	171	187	10.7076
((((((.....)))))	chr2:216279114-216279368(-)$1	1	190	206	9.2035
))).))....))))))	chr2:85546235-85546449(-)$1	1	103	119	6.5291
((((.(....).))))	chr8:22267347-22267629(+)$1	1	78	94	9.0493
.((((((...))))))	chrX:132742051-132742310(-)$1	1	209	225	9.0550
((((((....))))))	chr1:156347485-156347722(+)$1	1	150	166	10.7076
((((((......))))	chr2:97492725-97492975(+)$1	1	108	124	9.9863
((((((......))))	chr22:38006659-38006920(+)$1	1	17	33	9.9863
((((((...)))))).	chr17:57915201-57915472(+)$1	1	71	87	9.5198
((((((....))))))	chr3:171523677-171523889(-)$1	1	22	38	10.7076
((((((......))))	chr11:65206471-65206715(+)$1	1	142	158	9.9863
((((((......))))	chr11:65206515-65206741(+)$1	1	98	114	9.9863
(((((((...))))))	chr9:134363483-134363745(+)$1	1	188	204	6.0887
))))))))..))))))	chr17:7411145-7411393(+)$1	1	195	211	7.3344
.((((((...))))))	chr2:42423843-42424116(+)$1	1	231	247	9.8070
))).))....))))))	chr2:85546249-85546464(-)$1	1	118	134	6.5291
.((((((...))))))	chr9:134295967-134296228(+)$1	1	227	243	9.0550
(((((((...))))))	chr12:27074506-27074752(-)$1	1	50	66	10.1171
((((((......))))	chrX:133013479-133013756(-)$1	1	184	200	9.9863
((((((......))))	chr16:50600695-50600940(+)$1	1	59	75	9.9863
((((((....))))))	chr14:23537103-23537356(-)$1	1	124	140	10.7076
((((((....))))))	chr6:159047173-159047424(+)$1	1	196	212	10.7076
((((((....))))))	chr3:171846878-171847121(+)$1	1	196	212	6.2471
(((.((....)).)))	chr17:58319724-58319933(-)$1	1	181	197	7.4101
((((((....))))))	chr7:26239454-26239708(-)$1	1	220	236	6.2471
((((((.....)))))	chr3:185817056-185817293(-)$1	1	0	16	9.2035
((((((....))))))	chr5:140105676-140105897(+)$1	1	192	208	10.7076
.((((((...))))))	chr1:8829460-8829714(-)$1	1	172	188	10.2266
((((((.....)))))	chr17:18965299-18965552(+)$1	1	96	112	9.2035
))))))))))))))).	chr8:17766069-17766339(-)$1	1	214	230	6.8927
))))))))..))))))	chr3:185817093-185817303(-)$1	1	118	134	7.5329
((((((....))))))	chr6:32941576-32941838(+)$1	1	29	45	10.7076
((((((....))))))	chr2:198299324-198299574(-)$1	1	102	118	10.7076
.((((((...))))))	chr14:31644429-31644694(-)$1	1	81	97	10.2266
((((((....))))))	chr14:23779491-23779743(+)$1	1	50	66	10.7076

#PSSM
f : 0.72	g : 0.07	c : 0.05	: : 0.05	[ : 0.05	$ : 0.02	F : 0.02	
f : 0.87	g : 0.07	c : 0.05	
f : 0.87	g : 0.07	c : 0.05	
f : 0.85	g : 0.07	] : 0.05	[ : 0.02	
f : 0.82	b : 0.07	g : 0.07	[ : 0.02	
f : 0.82	b : 0.07	g : 0.07	a : 0.02	
m : 0.37	o : 0.17	f : 0.17	n : 0.07	4 : 0.05	[ : 0.02	= : 0.02	l : 0.02	g : 0.02	b : 0.02	c : 0.02	
m : 0.37	l : 0.19	o : 0.17	n : 0.07	b : 0.05	4 : 0.05	= : 0.02	c : 0.02	f : 0.02	
m : 0.37	l : 0.19	o : 0.17	n : 0.07	4 : 0.05	2 : 0.05	b : 0.02	= : 0.02	c : 0.02	
m : 0.37	o : 0.17	l : 0.17	n : 0.07	4 : 0.05	f : 0.05	2 : 0.05	[ : 0.02	= : 0.02	
f : 0.60	o : 0.17	n : 0.07	g : 0.07	= : 0.02	a : 0.02	b : 0.02	
f : 0.67	o : 0.17	g : 0.07	= : 0.02	] : 0.02	b : 0.02	
f : 0.87	g : 0.07	= : 0.02	] : 0.02	
f : 0.90	g : 0.07	= : 0.02	
f : 0.90	g : 0.07	= : 0.02	
f : 0.85	g : 0.07	= : 0.02	3 : 0.02	2 : 0.02	

#score	367.0784657228352
#seq	40
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_UTR_m1_run1.txt

#BEAR
e"""bb[==========nnnnn==========]bb22	chr1:52530503-52530790(+)$1	287	66	103	13.4345
eee####eeeee[cccooooooccc]eeeeeeeeee:	chr7:44609419-44609687(-)$1	268	138	175	15.2278
ccc=============lll=============]ccc:	chr17:30533939-30534204(+)$1	265	36	73	13.6427
ccc============[bbnnnnnbb]===========	chr15:93428690-93428948(+)$1	258	129	166	13.2741
============[cccooooooccc]===========	chr2:54137062-54137313(-)$1	251	165	202	20.4010
ii$$$$$ccc[addddoooooodddd]a]ccciiiii	chr19:37569348-37569633(+)$1	285	100	137	15.6869
!ccc[gggggggddddoooooodddd333ggggggg]	chr11:65339995-65340271(+)$1	276	149	186	16.7414
=====$$$$$ffffffooooooffffff=========	chr1:25569983-25570239(-)$1	256	27	64	15.4576
)))))))iiiiiiiiiooooooiiiiiiiii======	chr1:28159200-28159484(+)$1	284	116	153	13.9090
ccciiiiiiiiiddddoooooodddd333iiiiiiii	chr13:97999159-97999473(+)$1	314	138	175	17.6813
===============qqqqqqqq==============	chr6:111320880-111321186(+)$1	306	214	251	13.6187
ggg"""dddd!!ddddoooooodddd333dddd4444	chr3:9984740-9985003(+)$1	263	159	196	16.0346
ggbb]ccc]ddddcccooooooccc:iiiiiiiiicc	chr4:76598240-76598499(-)$1	259	181	218	14.7264
!!ccc####dddd[bboooooobb]dddd22ccc22e	chr16:84808694-84808980(+)$1	286	62	99	13.3186
ggggggg!!ccc[ddddnnnnnddddccc]ggggggg	chr8:102217284-102217611(-)$1	327	195	232	12.6158
hh]bbggggggg[cccooooooccc333gggggggFF	chr1:46658442-46658697(-)$1	255	93	130	15.9056
c[ccc"""eeeeecccooooooccc22eeeee4444c	chr22:49809542-49809807(-)$1	265	34	71	16.4520
eeee[==========ssssssssss==========]e	chr16:4494620-4494916(+)$1	296	194	231	12.5520
iiiiiiiccccccrrrrrrrrrccc]ccc]iiiiiii	chr17:21208336-21208688(+)$1	352	307	344	13.7248
dddd"""iiiiiiiiiooooooiiiiiiiii]dddd]	chr17:40991293-40991552(+)$1	259	201	238	16.3175
dd[ccc!!bb"""cccooooooccc]bbccc]dddd4	chr6:82901330-82901624(-)$1	294	27	64	15.9543
"""dddd$$$$$ddddoooooodddd4444dddd22i	chr2:198284951-198285204(-)$1	253	54	91	14.0207
===========[ddddnnnnndddd]===========	chr15:85660959-85661247(+)$1	288	141	178	15.3941
=========gggggggoooooogggggggffffffll	chr14:69585726-69586016(-)$1	290	147	184	15.2186
bb[eeeee[gggggggooooooggggggg]eeeeebb	chr22:40343048-40343331(+)$1	283	76	113	14.0570
e[eeeee[bb!!ddddoooooodddd22bbeeeeeee	chr17:42580516-42580824(-)$1	308	155	192	14.1980
eeeeeeeee####cccooooooccc333eeeeedddd	chr22:20905673-20906005(+)$1	332	199	236	16.2751
====!!ccc####ddddmmmmdddd]ccc]=======	chr2:201718465-201718736(-)$1	271	88	125	13.4161
ccc"""dddd"""cccooooooccc]ddddccc]bb]	chr2:32390860-32391181(+)$1	321	147	184	16.0709
hhhhh!!ffffffcccooooooccc333ffffffhhh	chr9:139757140-139757420(-)$1	280	54	91	14.8329
!!eeeee!!ccc[bbaooooooa]bb]ccceeeee]g	chr9:139341162-139341397(-)$1	235	110	147	14.8453
bb####ccc[dddd[aooooooa]ddddccc22bb]d	chrX:12994164-12994411(+)$1	247	129	166	13.6913
hhhhhhh[dddd[cccooooooccc]ddddhhhhhhh	chr3:180325579-180325839(+)$1	260	61	98	13.5102
iiiiii[ccc####bbnnnnnbb4444ccciiiiiii	chr11:118516441-118516696(+)$1	255	141	178	13.2937
dddd!!ccc!!eeeeeooooooeeeee22cccdddd]	chr14:73420847-73421110(+)$1	263	88	125	13.5819
Geeeeeeeeee!!cccooooooccc]eeeee4444ee	chr4:106345239-106345460(-)$1	221	124	161	15.0285
==========ddddrrrrrrrrrdddd333=======	chr1:207896906-207897174(+)$1	268	94	131	14.0909
[eeeee!!a####cccooooooccc333a22eeeeec	chr7:150774531-150774790(-)$1	259	145	182	17.2753
fff[ddddccc!!cccooooooccc22ccc]dddd22	chr15:65883768-65884043(-)$1	275	208	245	15.5433
eebb"""gggggggcccnnnnnccc]ggggggg333b	chr20:60813516-60813797(+)$1	281	230	267	13.5381
c============vvvvvvvvvvvvv===========	chr16:22336484-22336741(+)$1	257	195	232	13.1765
[bb[a!!dddd!!cccooooooccc22dddd22a]bb	chr3:142137072-142137368(-)$1	296	72	109	15.4745
eee[a!!eeeee[cccooooooccceeeee22a]eee	chr3:48962143-48962406(+)$1	263	138	175	15.4334
ee!!a[ffffff"""aooooooa22ffffff]a4444	chr12:31244698-31244959(+)$1	261	202	239	13.9657
a[==========[cccnnnnnccc]==========]a	chr1:153604198-153604487(-)$1	289	22	59	16.0142
d:iiiiiiiii####cccmmmmccc4444iiiiiiii	chr3:47033820-47034100(+)$1	280	33	70	12.7712
d[eeeee!!bb!!cccooooooccc22bbeeeee22d	chr4:429390-429671(-)$1	281	234	271	15.5626
####eeeee!!eeeeeooooooeeeee333eeeeeee	chr8:144911028-144911283(-)$1	255	180	217	14.3824
::gggggggccc[aooooooa]ccc22gggggggggg	chr12:31450864-31451119(-)$1	255	18	55	12.7995
[ccc####bb"""cccooooooccc22bb333ccc]b	chr17:45266390-45266642(-)$1	252	108	145	17.1601
"""dddd[ffffff[aooooooaffffff]dddd]cc	chr8:27288491-27288765(+)$1	274	77	114	13.2732

#otherMatches

#Seq PSSM
UAAAAAAACUGGCUGUGAAUAAUAUAGCUGGUAUUGA	chr1:52530503-52530790(+)$1	287	66	103	13.4345
CAGAGCCUGCGGGUUGGAGAUGCAAGCUGCACUGUCU	chr7:44609419-44609687(-)$1	268	138	175	15.2278
UUGUGAUGUUGUAUGCCUGGUAUAUGAUGUCAGCAAU	chr17:30533939-30534204(+)$1	265	36	73	13.6427
AGUGGGUUAAUUUUUAUUGUUUUGACAAAAAUUAGCU	chr15:93428690-93428948(+)$1	258	129	166	13.2741
UAAAAUGAAGUAUGAAGUAGUGUuuuuguuuuguuuu	chr2:54137062-54137313(-)$1	251	165	202	20.4010
ACCCUGAACUGCACCUCUGUCAAGGUAGGAGUGUCCG	chr19:37569348-37569633(+)$1	285	100	137	15.6869
ACGGGCUGCCCUCGGCAGAGGCGCCGGGCGGGGCGGG	chr11:65339995-65340271(+)$1	276	149	186	16.7414
UUUGUUUACAAUUAGGCUAUUUUUUAAUAUAGGAUUU	chr1:25569983-25570239(-)$1	256	27	64	15.4576
AACUAAUUGAGGUAUGGAAAUACAUGUCUUACUUUUU	chr1:28159200-28159484(+)$1	284	116	153	13.9090
GCCGCGGCCGCGGCCACAGUCAUGGUAAGUGCGGCCG	chr13:97999159-97999473(+)$1	314	138	175	17.6813
UGUGUUUUUAUUUUGACAUGCUCCAGGAUAAAAAUAC	chr6:111320880-111321186(+)$1	306	214	251	13.6187
ACCCAGCAUGAAUGGUGAAGAGGCUGGAAUAUGGGCA	chr3:9984740-9985003(+)$1	263	159	196	16.0346
GAGGCAAUCGUCCGGUGUGUGAGCCCGGGAGCCGGAG	chr4:76598240-76598499(-)$1	259	181	218	14.7264
GUUUUCCAGAACUGCUUUCUCCAGGGGUUAAAAAUAA	chr16:84808694-84808980(+)$1	286	62	99	13.3186
CCGCCGGUCAGCUGCCAGAGUGUGGCGCUCCCGGUGG	chr8:102217284-102217611(-)$1	327	195	232	12.6158
AGAGGACCUGGACAUUGCUGUGGAUUUUUUCAGGUGA	chr1:46658442-46658697(-)$1	255	93	130	15.9056
gcagaagaauuuuucuuaguacagaacaaaauggagu	chr22:49809542-49809807(-)$1	265	34	71	16.4520
CUUCACAGGAACAUGUCUCGCCAUUCAUGUUUCUGAG	chr16:4494620-4494916(+)$1	296	194	231	12.5520
AGUCCUGGGUGCUUUGUGAUAUGGUGGCCACAGGGCU	chr17:21208336-21208688(+)$1	352	307	344	13.7248
AGGUAAAAUGAAUAGACCAAAUUCUAUUCAUCACCUG	chr17:40991293-40991552(+)$1	259	201	238	16.3175
GUCCUGUCAGCCCUCCUGUUGUGGAUCUCAGAACUAU	chr6:82901330-82901624(-)$1	294	27	64	15.9543
UAAUUCUUUCCCACUUUUCUAUAAGUAUUCAGAAAUU	chr2:198284951-198285204(-)$1	253	54	91	14.0207
GGGCAGGAGCAGUGGGGAGAGUCUAGUGCUUCUGCCU	chr15:85660959-85661247(+)$1	288	141	178	15.3941
UUCAUAUAUGAAGAGGCAAAUAUCUCUUUAGACUAAA	chr14:69585726-69586016(-)$1	290	147	184	15.2186
CAAGUUUGAUUUCACUGCUUCAGGUGAGGAUGAACUG	chr22:40343048-40343331(+)$1	283	76	113	14.0570
GCGGGGAAGGCGCUGGUCUAGCCCAGAACCUCCUUCA	chr17:42580516-42580824(-)$1	308	155	192	14.1980
AGUCAGAAGGUCUGUGUCACCUCACUUGCUUCUGGGA	chr22:20905673-20906005(+)$1	332	199	236	16.2751
CAAGACGCUGUAAACCUCUGAAGGUAAGCCUUUGAGA	chr2:201718465-201718736(-)$1	271	88	125	13.4161
GCUGAUUCGGUUUAUCUUAUUUGGUCCCGAAGCGACC	chr2:32390860-32391181(+)$1	321	147	184	16.0709
GGGCCAUUGGUGAGUGUCCCUCCACCCUUCGCCGGGU	chr9:139757140-139757420(-)$1	280	54	91	14.8329
AAGGGGAAAGGUACCCAGUGAGGAGGCACCUCCCCAU	chr9:139341162-139341397(-)$1	235	110	147	14.8453
GCAGUUCCCAGCCCAGAGACAGCGGGGCGGGUGGCUC	chrX:12994164-12994411(+)$1	247	129	166	13.6913
ACUUAAGUAAGGCAUUAUGAAAAGUUUCUUUUUAGGU	chr3:180325579-180325839(+)$1	260	61	98	13.5102
GCACAGAGCUACCUACUGCAUGUCAAGGGCCUGUGCU	chr11:118516441-118516696(+)$1	255	141	178	13.2937
CCUGAAUAUCCAAGCAAAUAACUGCUUCAGUACAGGU	chr14:73420847-73421110(+)$1	263	88	125	13.5819
CCAGAAAGUGAAAGCAAAUUAGUGUGUCAUUGGAAUU	chr4:106345239-106345460(-)$1	221	124	161	15.0285
GUGUUUGCUGAGGAAUUCUGUCAUCUUUAACAGUAAG	chr1:207896906-207897174(+)$1	268	94	131	14.0909
AGAGGGACCAUGAAGCGCCAAAGCUAAGGAGCUCUCG	chr7:150774531-150774790(-)$1	259	145	182	17.2753
CUGGUAUGCCAUGGUCUCGGAUGAUGCUGGAUGUGUA	chr15:65883768-65884043(-)$1	275	208	245	15.5433
ggggagggcgggccgggCAGGACCCGGGUCCGCAGGC	chr20:60813516-60813797(+)$1	281	230	267	13.5381
AGAGGGUGGAGGGCUCUCACCGUUCACCCUUCACCCU	chr16:22336484-22336741(+)$1	257	195	232	13.1765
GCAGUUAUUCAGAAAAUAUGAUUUUGAUGAAGUAGUG	chr3:142137072-142137368(-)$1	296	72	109	15.4745
aucaugccuagcuaauuuuuguauuguuaguagagau	chr3:48962143-48962406(+)$1	263	138	175	15.4334
GUGGGGCUUGAUAGAGGGUGCACGAGUCAAGGCGGUG	chr12:31244698-31244959(+)$1	261	202	239	13.9657
CGCUACUCUUGCGCCCUUGGUGggggugggggugggg	chr1:153604198-153604487(-)$1	289	22	59	16.0142
CCGGGCAGGGCACCUGGCAGCUGCCCCUGGUCCUGCU	chr3:47033820-47034100(+)$1	280	33	70	12.7712
cccaggagaacuagcccuuaguggcauguuucugaug	chr4:429390-429671(-)$1	281	234	271	15.5626
CGUGGUCACGACGGAAGCGGGGUUCUGGGGGUGACGC	chr8:144911028-144911283(-)$1	255	180	217	14.3824
UAGAGGGCUGCUGUAUUUGCAGAGCUAAGUCCUCCAG	chr12:31450864-31451119(-)$1	255	18	55	12.7995
CGGUGCUGCAGGAACCCGUCCAGGUAAUGAUAACCUU	chr17:45266390-45266642(-)$1	252	108	145	17.1601
GGAUUCCAGGCCUCUCGGAAAAGGGGGCCAGGAGGGG	chr8:27288491-27288765(+)$1	274	77	114	13.2732

#DB
(...((.((((((((((.....)))))))))).))..	chr1:52530503-52530790(+)$1	1	66	103	13.4345
(((....(((((.(((......))).)))))))))).	chr7:44609419-44609687(-)$1	1	138	175	15.2278
((((((((((((((((...))))))))))))).))).	chr17:30533939-30534204(+)$1	1	36	73	13.6427
)))((((((((((((.((.....)).)))))))))))	chr15:93428690-93428948(+)$1	1	129	166	13.2741
((((((((((((.(((......))).)))))))))))	chr2:54137062-54137313(-)$1	1	165	202	20.4010
((.....(((.(((((......)))).).))))))))	chr19:37569348-37569633(+)$1	1	100	137	15.6869
.(((.(((((((((((......))))...))))))).	chr11:65339995-65340271(+)$1	1	149	186	16.7414
(((((.....((((((......)))))))))))))))	chr1:25569983-25570239(-)$1	1	27	64	15.4576
.......(((((((((......)))))))))))))))	chr1:28159200-28159484(+)$1	1	116	153	13.9090
)))(((((((((((((......))))...))))))))	chr13:97999159-97999473(+)$1	1	138	175	17.6813
(((((((((((((((........))))))))))))))	chr6:111320880-111321186(+)$1	1	214	251	13.6187
(((...((((..((((......))))...))))....	chr3:9984740-9985003(+)$1	1	159	196	16.0346
)))).))).))))(((......))).(((((((((((	chr4:76598240-76598499(-)$1	1	181	218	14.7264
..(((....((((.((......)).))))..)))..)	chr16:84808694-84808980(+)$1	1	62	99	13.3186
(((((((..(((.((((.....))))))).)))))))	chr8:102217284-102217611(-)$1	1	195	232	12.6158
)).))(((((((.(((......)))...)))))))))	chr1:46658442-46658697(-)$1	1	93	130	15.9056
(.(((...((((((((......)))..)))))....)	chr22:49809542-49809807(-)$1	1	34	71	16.4520
((((.((((((((((..........)))))))))).)	chr16:4494620-4494916(+)$1	1	194	231	12.5520
(((((((((((((.........))).))).)))))))	chr17:21208336-21208688(+)$1	1	307	344	13.7248
((((...(((((((((......))))))))).)))).	chr17:40991293-40991552(+)$1	1	201	238	16.3175
((.(((..((...(((......))).))))).)))).	chr6:82901330-82901624(-)$1	1	27	64	15.9543
...((((.....((((......))))....))))..)	chr2:198284951-198285204(-)$1	1	54	91	14.0207
(((((((((((.((((.....)))).)))))))))))	chr15:85660959-85661247(+)$1	1	141	178	15.3941
)))))))))(((((((......)))))))((((((..	chr14:69585726-69586016(-)$1	1	147	184	15.2186
((.(((((.(((((((......))))))).)))))))	chr22:40343048-40343331(+)$1	1	76	113	14.0570
(.(((((.((..((((......))))..)))))))))	chr17:42580516-42580824(-)$1	1	155	192	14.1980
))))(((((....(((......)))...)))))((((	chr22:20905673-20906005(+)$1	1	199	236	16.2751
((((..(((....((((....)))).))).)))))))	chr2:201718465-201718736(-)$1	1	88	125	13.4161
(((...((((...(((......))).))))))).)).	chr2:32390860-32391181(+)$1	1	147	184	16.0709
(((((..(((((((((......)))...)))))))))	chr9:139757140-139757420(-)$1	1	54	91	14.8329
..(((((..(((.(((......).)).)))))))).)	chr9:139341162-139341397(-)$1	1	110	147	14.8453
((....(((.((((.(......).)))))))..)).)	chrX:12994164-12994411(+)$1	1	129	166	13.6913
(((((((.((((.(((......))).)))))))))))	chr3:180325579-180325839(+)$1	1	61	98	13.5102
((((((.(((....((.....))....))))))))))	chr11:118516441-118516696(+)$1	1	141	178	13.2937
((((..(((..(((((......)))))..))))))).	chr14:73420847-73421110(+)$1	1	88	125	13.5819
)((((((((((..(((......))).)))))....))	chr4:106345239-106345460(-)$1	1	124	161	15.0285
((((((((((((((.........))))...)))))))	chr1:207896906-207897174(+)$1	1	94	131	14.0909
.(((((..(....(((......)))...)..))))))	chr7:150774531-150774790(-)$1	1	145	182	17.2753
(((.(((((((..(((......)))..))).))))..	chr15:65883768-65884043(-)$1	1	208	245	15.5433
((((...((((((((((.....))).)))))))...)	chr20:60813516-60813797(+)$1	1	230	267	13.5381
(((((((((((((.............)))))))))))	chr16:22336484-22336741(+)$1	1	195	232	13.1765
.((.(..((((..(((......)))..))))..).))	chr3:142137072-142137368(-)$1	1	72	109	15.4745
(((.(..(((((.(((......))))))))..).)))	chr3:48962143-48962406(+)$1	1	138	175	15.4334
((..(.((((((...(......)..)))))).)....	chr12:31244698-31244959(+)$1	1	202	239	13.9657
(.((((((((((.(((.....))).)))))))))).)	chr1:153604198-153604487(-)$1	1	22	59	16.0142
).(((((((((....(((....)))....))))))))	chr3:47033820-47034100(+)$1	1	33	70	12.7712
(.(((((..((..(((......)))..)))))))..)	chr4:429390-429671(-)$1	1	234	271	15.5626
....(((((..(((((......)))))...)))))))	chr8:144911028-144911283(-)$1	1	180	217	14.3824
..((((((((((.(......).)))..)))))))(((	chr12:31450864-31451119(-)$1	1	18	55	12.7995
.(((....((...(((......)))..))...))).)	chr17:45266390-45266642(-)$1	1	108	145	17.1601
...((((.((((((.(......))))))).)))).))	chr8:27288491-27288765(+)$1	1	77	114	13.2732

#PSSM
e : 0.15	= : 0.13	c : 0.11	d : 0.09	i : 0.05	! : 0.05	g : 0.05	h : 0.05	[ : 0.05	" : 0.03	b : 0.03	) : 0.01	G : 0.01	f : 0.01	a : 0.01	# : 0.01	: : 0.01	
e : 0.15	= : 0.15	c : 0.11	[ : 0.07	" : 0.05	i : 0.05	g : 0.05	h : 0.05	d : 0.05	b : 0.05	! : 0.03	: : 0.03	) : 0.01	f : 0.01	# : 0.01	
e : 0.17	= : 0.17	c : 0.15	" : 0.05	g : 0.05	b : 0.05	i : 0.05	d : 0.03	[ : 0.03	h : 0.03	# : 0.03	$ : 0.01	) : 0.01	] : 0.01	f : 0.01	! : 0.01	
= : 0.21	e : 0.15	c : 0.09	i : 0.07	d : 0.07	" : 0.05	# : 0.05	b : 0.05	[ : 0.05	g : 0.03	h : 0.03	$ : 0.01	) : 0.01	! : 0.01	
= : 0.19	e : 0.15	i : 0.07	" : 0.07	# : 0.05	c : 0.05	d : 0.05	a : 0.05	b : 0.03	[ : 0.03	g : 0.03	! : 0.03	h : 0.03	$ : 0.01	) : 0.01	] : 0.01	
= : 0.19	e : 0.15	" : 0.09	! : 0.09	# : 0.07	g : 0.07	i : 0.07	d : 0.05	$ : 0.03	c : 0.03	b : 0.01	) : 0.01	h : 0.01	[ : 0.01	
= : 0.19	e : 0.13	d : 0.09	! : 0.09	g : 0.07	c : 0.07	# : 0.05	i : 0.05	" : 0.05	[ : 0.03	$ : 0.03	) : 0.01	h : 0.01	f : 0.01	
= : 0.21	c : 0.13	e : 0.11	! : 0.09	g : 0.07	i : 0.07	d : 0.07	[ : 0.05	$ : 0.03	# : 0.03	f : 0.03	" : 0.01	
= : 0.21	c : 0.13	e : 0.11	g : 0.07	i : 0.07	d : 0.07	! : 0.05	b : 0.05	f : 0.05	$ : 0.03	] : 0.01	# : 0.01	[ : 0.01	a : 0.01	
= : 0.19	c : 0.13	d : 0.11	g : 0.09	e : 0.07	i : 0.07	b : 0.07	# : 0.05	f : 0.05	$ : 0.03	! : 0.03	[ : 0.01	
= : 0.17	d : 0.11	g : 0.09	c : 0.09	e : 0.07	f : 0.07	i : 0.07	! : 0.07	# : 0.07	" : 0.05	[ : 0.01	$ : 0.01	b : 0.01	
= : 0.15	! : 0.11	e : 0.09	g : 0.09	d : 0.09	# : 0.09	f : 0.07	c : 0.07	i : 0.05	" : 0.05	a : 0.01	$ : 0.01	[ : 0.01	
d : 0.21	[ : 0.17	= : 0.11	# : 0.09	" : 0.07	! : 0.07	f : 0.05	e : 0.05	g : 0.05	i : 0.03	c : 0.01	
c : 0.35	d : 0.21	= : 0.09	g : 0.05	f : 0.03	i : 0.03	# : 0.03	e : 0.03	[ : 0.01	r : 0.01	b : 0.01	v : 0.01	" : 0.01	a : 0.01	
c : 0.37	d : 0.17	= : 0.09	b : 0.05	i : 0.03	r : 0.03	g : 0.03	[ : 0.03	e : 0.03	f : 0.01	v : 0.01	" : 0.01	# : 0.01	o : 0.01	
c : 0.39	d : 0.17	a : 0.07	= : 0.03	i : 0.03	b : 0.03	r : 0.03	g : 0.03	e : 0.03	[ : 0.01	f : 0.01	q : 0.01	s : 0.01	v : 0.01	o : 0.01	
o : 0.70	n : 0.05	d : 0.03	r : 0.03	c : 0.03	= : 0.01	l : 0.01	b : 0.01	q : 0.01	s : 0.01	v : 0.01	
o : 0.70	n : 0.11	r : 0.03	l : 0.01	b : 0.01	q : 0.01	s : 0.01	m : 0.01	v : 0.01	c : 0.01	
o : 0.70	n : 0.13	r : 0.03	m : 0.03	l : 0.01	q : 0.01	s : 0.01	v : 0.01	
o : 0.70	n : 0.13	r : 0.03	m : 0.03	= : 0.01	q : 0.01	s : 0.01	v : 0.01	
o : 0.68	n : 0.13	r : 0.03	m : 0.03	= : 0.01	q : 0.01	s : 0.01	v : 0.01	a : 0.01	
o : 0.68	n : 0.07	r : 0.03	d : 0.03	= : 0.01	q : 0.01	s : 0.01	b : 0.01	v : 0.01	c : 0.01	m : 0.01	] : 0.01	
c : 0.43	d : 0.17	a : 0.07	= : 0.03	i : 0.03	b : 0.03	g : 0.03	e : 0.03	n : 0.01	f : 0.01	q : 0.01	s : 0.01	r : 0.01	v : 0.01	
c : 0.43	d : 0.19	= : 0.05	b : 0.03	f : 0.03	i : 0.03	g : 0.03	] : 0.03	e : 0.03	s : 0.01	4 : 0.01	v : 0.01	2 : 0.01	
c : 0.41	d : 0.21	= : 0.05	b : 0.03	f : 0.03	i : 0.03	] : 0.03	g : 0.03	e : 0.03	s : 0.01	4 : 0.01	v : 0.01	2 : 0.01	
] : 0.21	d : 0.19	2 : 0.11	= : 0.09	3 : 0.07	f : 0.05	e : 0.05	i : 0.03	g : 0.03	4 : 0.03	: : 0.01	b : 0.01	v : 0.01	
= : 0.17	3 : 0.13	2 : 0.13	e : 0.09	d : 0.09	f : 0.05	i : 0.05	c : 0.05	4 : 0.05	g : 0.05	] : 0.03	b : 0.01	
= : 0.17	3 : 0.17	c : 0.11	d : 0.09	e : 0.07	g : 0.07	f : 0.05	i : 0.05	b : 0.05	4 : 0.03	2 : 0.03	a : 0.01	
= : 0.19	c : 0.15	e : 0.09	3 : 0.09	g : 0.09	d : 0.07	i : 0.05	b : 0.05	f : 0.05	4 : 0.03	] : 0.01	2 : 0.01	a : 0.01	
= : 0.19	c : 0.13	e : 0.11	i : 0.09	] : 0.09	g : 0.07	d : 0.07	f : 0.05	3 : 0.05	2 : 0.03	4 : 0.01	b : 0.01	
= : 0.23	e : 0.17	i : 0.13	c : 0.09	g : 0.09	d : 0.07	2 : 0.05	f : 0.05	h : 0.01	] : 0.01	3 : 0.01	
= : 0.25	e : 0.17	g : 0.09	i : 0.09	c : 0.07	d : 0.07	] : 0.05	2 : 0.05	f : 0.03	h : 0.01	4 : 0.01	3 : 0.01	
= : 0.21	e : 0.15	d : 0.13	i : 0.11	g : 0.09	c : 0.05	] : 0.03	4 : 0.03	f : 0.03	2 : 0.03	a : 0.03	h : 0.01	
= : 0.21	e : 0.13	d : 0.13	i : 0.11	g : 0.07	4 : 0.07	c : 0.05	b : 0.03	f : 0.03	] : 0.03	h : 0.01	3 : 0.01	a : 0.01	
= : 0.21	e : 0.13	i : 0.11	d : 0.09	g : 0.07	4 : 0.07	b : 0.05	2 : 0.05	c : 0.03	h : 0.03	] : 0.03	f : 0.01	3 : 0.01	
= : 0.17	e : 0.11	2 : 0.09	i : 0.09	] : 0.09	d : 0.07	c : 0.05	g : 0.05	4 : 0.05	b : 0.05	h : 0.03	F : 0.01	l : 0.01	3 : 0.01	
= : 0.17	i : 0.11	e : 0.11	] : 0.07	c : 0.07	b : 0.07	4 : 0.05	g : 0.05	d : 0.05	2 : 0.03	: : 0.03	h : 0.03	F : 0.01	l : 0.01	a : 0.01	

#score	754.5741637050496
#seq	51
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_CDS_m3_run2.txt

#BEAR
bbHHHHHHHHYYEEEEEZZZEEEEE:E	chr1:161088100-161088509(+)$1	409	262	289	26.8998
CIIIIIIIIIYYEEEEE}A}DDDD}CC	chr20:34312412-34312680(-)$1	268	237	264	28.2661

#otherMatches

#Seq PSSM
CUAUUCAGGCGGCGAGCAGAGCCCCUU	chr1:161088100-161088509(+)$1	409	262	289	26.8998
CUCCUGUUGCAUGGUAUAGUGCUGUUG	chr20:34312412-34312680(-)$1	268	237	264	28.2661

#DB
))))))))))..)))))...))))).(	chr1:161088100-161088509(+)$1	1	262	289	26.8998
))))))))))..))))).).)))).))	chr20:34312412-34312680(-)$1	1	237	264	28.2661

#PSSM
b : 0.50	C : 0.50	
b : 0.50	I : 0.50	
H : 0.50	I : 0.50	
H : 0.50	I : 0.50	
H : 0.50	I : 0.50	
H : 0.50	I : 0.50	
H : 0.50	I : 0.50	
H : 0.50	I : 0.50	
H : 0.50	I : 0.50	
H : 0.50	I : 0.50	
Y : 1.00	
Y : 1.00	
E : 1.00	
E : 1.00	
E : 1.00	
E : 1.00	
E : 1.00	
Z : 0.50	} : 0.50	
Z : 0.50	A : 0.50	
Z : 0.50	} : 0.50	
E : 0.50	D : 0.50	
E : 0.50	D : 0.50	
E : 0.50	D : 0.50	
E : 0.50	D : 0.50	
E : 0.50	} : 0.50	
: : 0.50	C : 0.50	
E : 0.50	C : 0.50	

#score	55.16597739830001
#seq	2
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_CDS_m3_run1.txt

#BEAR
ffffffqqqqqqqqffffffd	chr19:46341698-46341974(-)$1	276	95	116	13.8335
======qqqqqqqq=======	chr6:56462664-56462905(-)$1	241	19	40	15.7553
##ddddqqqqqqqqdddd444	chr21:40570622-40570926(-)$1	304	14	35	14.2053
d!!cccqqqqqqqqccc22dd	chr9:79933364-79933591(+)$1	227	4	25	15.8113
bb[cccqqqqqqqqccc]bbe	chr5:145537189-145537426(-)$1	237	63	84	14.7287
ddd[bbqqqqqqqqbb]dddd	chr2:101627343-101627593(+)$1	250	78	99	14.6653
ccddddqqqqqqqqdddd>>>	chr15:56387506-56387814(-)$1	308	54	75	13.4867
ggggggqqqqqqqqggggggg	chr3:42687277-42687560(+)$1	283	68	89	15.1300
eeecccqqqqqqqqccc]eee	chr16:19548301-19548565(+)$1	264	122	143	15.5792
ccccccqqqqqqqqccc]ccc	chr14:75265792-75266065(+)$1	273	153	174	15.5194
ee!!bbqqqqqqqqbb]eeee	chr7:99631412-99631656(+)$1	244	66	87	15.5422
fff[bbqqqqqqqqbb]ffff	chr1:155449874-155450172(-)$1	298	50	71	14.9820
d"""bbqqqqqqqqbb333dd	chr9:135203354-135203631(-)$1	277	31	52	15.9086
======qqqqqqqq=======	chr9:19276223-19276488(+)$1	265	205	226	15.7553
ffffffqqqqqqqqffffffd	chr1:39781090-39781353(+)$1	263	85	106	13.8335
ffffffqqqqqqqqffffff2	chr6:87967727-87967995(+)$1	268	129	150	13.6130
ccc[bbqqqqqqqqbb]ccc6	chr1:235577697-235578047(+)$1	350	60	81	14.7127
eee[bbqqqqqqqqbbeeeee	chr14:74439582-74439827(-)$1	245	112	133	15.0675
"""cccqqqqqqqqccc333c	chr19:58264900-58265260(+)$1	360	78	99	16.2315
c[acccqqqqqqqqccc333a	chr10:70333885-70334125(+)$1	240	59	80	16.0620
ggggggqqqqqqqqggggggg	chr11:118373854-118374101(+)$1	247	179	200	15.1300
g!!cccqqqqqqqqccc22gg	chr11:6530317-6530603(+)$1	286	70	91	16.2166
gggg[aqqqqqqqqa]ggggg	chr1:46073390-46073629(+)$1	239	181	202	14.8912
d[ddddqqqqqqqqdddd22d	chr21:16340196-16340462(-)$1	266	84	105	14.0168
e!!cccqqqqqqqqccc22ee	chr9:99580698-99580967(-)$1	269	122	143	16.1494
ccccccqqqqqqqqccc]ccc	chr10:101591670-101591883(+)$1	213	139	160	15.5194
ddd[bbqqqqqqqqbb]dddd	chr1:46073091-46073344(+)$1	253	44	65	14.6653
e[ddddqqqqqqqqddddeee	chr4:6864822-6865081(+)$1	259	156	177	14.4078
ggggggqqqqqqqqggggggg	chr9:131356468-131356720(+)$1	252	138	159	15.1300
e"""bbqqqqqqqqbb333ee	chr5:73141990-73142244(+)$1	254	33	54	16.2467
a[ddddqqqqqqqqdddd]a]	chr16:72992397-72992650(-)$1	253	96	117	14.3319
ff[cccqqqqqqqqccc]fff	chr16:53272266-53272524(+)$1	258	107	128	15.6141
g!!cccqqqqqqqqccc6666	chr3:138478012-138478263(-)$1	251	146	167	14.1310
iiiiiiqqqqqqqqiiiiiii	chr1:247014244-247014540(-)$1	296	8	29	15.2569
======qqqqqqqq=======	chr2:167128830-167129120(-)$1	290	257	278	15.7553
!!ddddqqqqqqqqdddd]cc	chr6:64395566-64395852(+)$1	286	155	176	14.5460
c!!cccqqqqqqqqccc22cc	chr10:105762232-105762510(+)$1	278	252	273	16.0509
ff[cccqqqqqqqqccc]fff	chr18:72343152-72343439(+)$1	287	80	101	15.6141
"""cccqqqqqqqqccc]ccc	chr6:138199718-138199978(+)$1	260	120	141	15.8884
eee[bbqqqqqqqqbb22eee	chr1:1647720-1647999(-)$1	279	77	98	15.3030
eeddddqqqqqqqqdddd]ee	chr5:5463595-5463877(+)$1	282	186	207	14.3111
ggggggqqqqqqqqggggggg	chr4:151792432-151792664(-)$1	232	8	29	15.1300
ffffffqqqqqqqqffffff:	chr17:37565320-37565626(-)$1	306	249	270	12.8774
=[ddddqqqqqqqqdddd]==	chr12:6710558-6710795(-)$1	237	130	151	14.7143
eee[bbqqqqqqqqbb]eeee	chr10:123845700-123845981(+)$1	281	195	216	15.2994
:a[cccqqqqqqqqccc]add	chr2:48025833-48026110(+)$1	277	73	94	14.5789
ff!!bbqqqqqqqqbb22fff	chr17:65343160-65343467(-)$1	307	62	83	15.3419
b!!cccqqqqqqqqcccbb]b	chr17:73234644-73234899(-)$1	255	125	146	14.6634
eeeebbqqqqqqqqbb]eeee	chr2:73682270-73682523(+)$1	253	62	83	14.9774
iiiiiiqqqqqqqqiiiiiii	chr1:39878319-39878557(+)$1	238	66	87	15.2569
======qqqqqqqq=======	chr5:140032542-140032830(+)$1	288	198	219	15.7553
ccccccqqqqqqqqccc22cc	chr1:155450836-155451060(-)$1	224	129	150	15.5177
ggg[bbqqqqqqqqbb22ggg	chr10:70404571-70404828(+)$1	257	93	114	15.6567
fbb[bbqqqqqqqqbb]bb]f	chr14:92470245-92470490(-)$1	245	181	202	14.0550
ggggggqqqqqqqqggggggg	chr10:64973809-64974065(-)$1	256	68	89	15.1300
eee[bbqqqqqqqqbbeeeee	chrX:76939027-76939355(-)$1	328	204	225	15.0675
""ddddqqqqqqqqdddd]gg	chr1:171510998-171511249(+)$1	251	170	191	14.5297
e"""bbqqqqqqqqbb333ee	chr1:214819557-214819784(+)$1	227	186	207	16.2467
[eeeeeqqqqqqqqeeeeeee	chr19:12015634-12015883(+)$1	249	168	189	13.7454
dddcccqqqqqqqqccc]ddd	chr10:101591655-101591870(+)$1	215	154	175	14.9794
e!!cccqqqqqqqqccceeee	chr16:24583056-24583307(+)$1	251	74	95	15.8589
gg!!bbqqqqqqqqbb22ggg	chr8:100568579-100568815(+)$1	236	124	145	15.8127

#otherMatches

#Seq PSSM
UCCCAGAGCCCAACCUGGGGG	chr19:46341698-46341974(-)$1	276	95	116	13.8335
UCUAAGUAUUUACUUUUGGAA	chr6:56462664-56462905(-)$1	241	19	40	15.7553
GAGUUUCUUUAAAAAAACCAA	chr21:40570622-40570926(-)$1	304	14	35	14.2053
CAUUGAUUCUAUUUUUAUAGU	chr9:79933364-79933591(+)$1	227	4	25	15.8113
CUUAGGGUGUUGGACCUCAGG	chr5:145537189-145537426(-)$1	237	63	84	14.7287
UUAUCUUUUUCUUUGGCUAAA	chr2:101627343-101627593(+)$1	250	78	99	14.6653
CAGUUCACACAUAGGAGCAAA	chr15:56387506-56387814(-)$1	308	54	75	13.4867
CAAGAUUUUUAUAUAUUUUGU	chr3:42687277-42687560(+)$1	283	68	89	15.1300
UUACUGUGGAAGGUCAGUUAA	chr16:19548301-19548565(+)$1	264	122	143	15.5792
CUGGAUGAACAAGAAUCACAG	chr14:75265792-75266065(+)$1	273	153	174	15.5194
CAUCAGCGCAUCCACUCUGGA	chr7:99631412-99631656(+)$1	244	66	87	15.5422
UUAAAAAUCCCUGCUUCUAAA	chr1:155449874-155450172(-)$1	298	50	71	14.9820
GAAGUUGUUAAAAAAGGAGCA	chr9:135203354-135203631(-)$1	277	31	52	15.9086
UCCUCUGUUAUAAGAGAGGGA	chr9:19276223-19276488(+)$1	265	205	226	15.7553
UCCUGGCAGCACACCCAGGAG	chr1:39781090-39781353(+)$1	263	85	106	13.8335
GAGGGUGCCGAAAUGCUUUCU	chr6:87967727-87967995(+)$1	268	129	150	13.6130
GGAGGAUCCUUUAUUCGUCCG	chr1:235577697-235578047(+)$1	350	60	81	14.7127
UUGAGCCCUGCUAUGCCGAAG	chr14:74439582-74439827(-)$1	245	112	133	15.0675
CAUGAGCCAUUUAUCUUUCAU	chr19:58264900-58265260(+)$1	360	78	99	16.2315
AGAUCUGUAAGAAAAGAAAAU	chr10:70333885-70334125(+)$1	240	59	80	16.0620
AUAUGGGCCAACGACCAUGUA	chr11:118373854-118374101(+)$1	247	179	200	15.1300
CUAGUUGGAAGAAGAAUGUGA	chr11:6530317-6530603(+)$1	286	70	91	16.2166
UUGAACAACUGGUAGGUCAAG	chr1:46073390-46073629(+)$1	239	181	202	14.8912
GAAGAGGAUCAGAACUUUAAC	chr21:16340196-16340462(-)$1	266	84	105	14.0168
UCAGCCAUAUGUCAGGCCUAA	chr9:99580698-99580967(-)$1	269	122	143	16.1494
GCUGAACAAUAUCCUUCGAGC	chr10:101591670-101591883(+)$1	213	139	160	15.5194
GAUAUGGAUAUAAGUAAAUCU	chr1:46073091-46073344(+)$1	253	44	65	14.6653
GUCUGUUACAGUGUGCAGCUU	chr4:6864822-6865081(+)$1	259	156	177	14.4078
GGAGCAGGUUGAGGUGCUCCA	chr9:131356468-131356720(+)$1	252	138	159	15.1300
GAAGUAGAAACCAAUGACGCU	chr5:73141990-73142244(+)$1	254	33	54	16.2467
CGAGUUGGAUGAGGAACUGGA	chr16:72992397-72992650(-)$1	253	96	117	14.3319
CUACUAUUGCAAACUGGGAGA	chr16:53272266-53272524(+)$1	258	107	128	15.6141
GAUAGCAUCUGAUGGCUCCAU	chr3:138478012-138478263(-)$1	251	146	167	14.1310
UACCUUGAUAUUGGAAGGUGA	chr1:247014244-247014540(-)$1	296	8	29	15.2569
UGAAAUGAAUGAAAAUUUCAU	chr2:167128830-167129120(-)$1	290	257	278	15.7553
AAGGCUCUGAUCAUAGCUCCU	chr6:64395566-64395852(+)$1	286	155	176	14.5460
GAUAGUGAAGUUGGGCUUACA	chr10:105762232-105762510(+)$1	278	252	273	16.0509
UGGAAAGCAAGGUAUUUGUAG	chr18:72343152-72343439(+)$1	287	80	101	15.6141
AAAGCUGAACUCCAAGCCGGG	chr6:138199718-138199978(+)$1	260	120	141	15.8884
AUUAGGGAAGCAUGCUAGAGU	chr1:1647720-1647999(-)$1	279	77	98	15.3030
UGGAGACAUCCCUAUUUCUCA	chr5:5463595-5463877(+)$1	282	186	207	14.3111
UAGAGCACAGAAAAGCUCUAC	chr4:151792432-151792664(-)$1	232	8	29	15.1300
CCACCUACCAGUACAGGUGGA	chr17:37565320-37565626(-)$1	306	249	270	12.8774
GCUGUCUCCAAGAUGAUGAUG	chr12:6710558-6710795(-)$1	237	130	151	14.7143
UGUUGCAACCAGGAGCUGCAG	chr10:123845700-123845981(+)$1	281	195	216	15.2994
AUGUGGAAUUUAAGCCAGACA	chr2:48025833-48026110(+)$1	277	73	94	14.5789
ACCCAUAAACCCCAAUUUGUU	chr17:65343160-65343467(-)$1	307	62	83	15.3419
GCAGCCAUCACCCAGGUCAUG	chr17:73234644-73234899(-)$1	255	125	146	14.6634
AUUUCAGAAUUAAAUGAAGAU	chr2:73682270-73682523(+)$1	253	62	83	14.9774
GCUGGUAAUACUGAACCAGUU	chr1:39878319-39878557(+)$1	238	66	87	15.2569
GGGAACAGGGCAUGGUUCCCU	chr5:140032542-140032830(+)$1	288	198	219	15.7553
AGUUGGCUCCUAAUCCAUUAC	chr1:155450836-155451060(-)$1	224	129	150	15.5177
AGUGCUAAUGUCCCAGAAGCU	chr10:70404571-70404828(+)$1	257	93	114	15.6567
AUUGAGUGAAUCUUCUGAAUU	chr14:92470245-92470490(-)$1	245	181	202	14.0550
GUUGUUAAACCCAAAAUAACU	chr10:64973809-64974065(-)$1	256	68	89	15.1300
GAGACUGCUAUGGAAGUUCAG	chrX:76939027-76939355(-)$1	328	204	225	15.0675
AAUGCACAAACAGUUGUAAAG	chr1:171510998-171511249(+)$1	251	170	191	14.5297
UGACCAAGAAAUUAUGAAGGC	chr1:214819557-214819784(+)$1	227	186	207	16.2467
UGGAAAAACUUUUAUUUCCCA	chr19:12015634-12015883(+)$1	249	168	189	13.7454
GCUGAACAAUAUCCUUCGAGC	chr10:101591655-101591870(+)$1	215	154	175	14.9794
UCAAGUGGCAAUAAACUACUU	chr16:24583056-24583307(+)$1	251	74	95	15.8589
GAGAUCCUGGAUCAGAAAUCG	chr8:100568579-100568815(+)$1	236	124	145	15.8127

#DB
((((((........)))))))	chr19:46341698-46341974(-)$1	1	95	116	13.8335
((((((........)))))))	chr6:56462664-56462905(-)$1	1	19	40	15.7553
..((((........))))...	chr21:40570622-40570926(-)$1	1	14	35	14.2053
(..(((........)))..))	chr9:79933364-79933591(+)$1	1	4	25	15.8113
((.(((........))).)))	chr5:145537189-145537426(-)$1	1	63	84	14.7287
(((.((........)).))))	chr2:101627343-101627593(+)$1	1	78	99	14.6653
((((((........))))...	chr15:56387506-56387814(-)$1	1	54	75	13.4867
((((((........)))))))	chr3:42687277-42687560(+)$1	1	68	89	15.1300
((((((........))).)))	chr16:19548301-19548565(+)$1	1	122	143	15.5792
((((((........))).)))	chr14:75265792-75266065(+)$1	1	153	174	15.5194
((..((........)).))))	chr7:99631412-99631656(+)$1	1	66	87	15.5422
(((.((........)).))))	chr1:155449874-155450172(-)$1	1	50	71	14.9820
(...((........))...))	chr9:135203354-135203631(-)$1	1	31	52	15.9086
((((((........)))))))	chr9:19276223-19276488(+)$1	1	205	226	15.7553
((((((........)))))))	chr1:39781090-39781353(+)$1	1	85	106	13.8335
((((((........)))))).	chr6:87967727-87967995(+)$1	1	129	150	13.6130
(((.((........)).))).	chr1:235577697-235578047(+)$1	1	60	81	14.7127
(((.((........)))))))	chr14:74439582-74439827(-)$1	1	112	133	15.0675
...(((........)))...)	chr19:58264900-58265260(+)$1	1	78	99	16.2315
(.((((........)))...)	chr10:70333885-70334125(+)$1	1	59	80	16.0620
((((((........)))))))	chr11:118373854-118374101(+)$1	1	179	200	15.1300
(..(((........)))..))	chr11:6530317-6530603(+)$1	1	70	91	16.2166
((((.(........).)))))	chr1:46073390-46073629(+)$1	1	181	202	14.8912
(.((((........))))..)	chr21:16340196-16340462(-)$1	1	84	105	14.0168
(..(((........)))..))	chr9:99580698-99580967(-)$1	1	122	143	16.1494
((((((........))).)))	chr10:101591670-101591883(+)$1	1	139	160	15.5194
(((.((........)).))))	chr1:46073091-46073344(+)$1	1	44	65	14.6653
(.((((........)))))))	chr4:6864822-6865081(+)$1	1	156	177	14.4078
((((((........)))))))	chr9:131356468-131356720(+)$1	1	138	159	15.1300
(...((........))...))	chr5:73141990-73142244(+)$1	1	33	54	16.2467
(.((((........)))).).	chr16:72992397-72992650(-)$1	1	96	117	14.3319
((.(((........))).)))	chr16:53272266-53272524(+)$1	1	107	128	15.6141
(..(((........)))....	chr3:138478012-138478263(-)$1	1	146	167	14.1310
((((((........)))))))	chr1:247014244-247014540(-)$1	1	8	29	15.2569
((((((........)))))))	chr2:167128830-167129120(-)$1	1	257	278	15.7553
..((((........)))).))	chr6:64395566-64395852(+)$1	1	155	176	14.5460
(..(((........)))..))	chr10:105762232-105762510(+)$1	1	252	273	16.0509
((.(((........))).)))	chr18:72343152-72343439(+)$1	1	80	101	15.6141
...(((........))).)))	chr6:138199718-138199978(+)$1	1	120	141	15.8884
(((.((........))..)))	chr1:1647720-1647999(-)$1	1	77	98	15.3030
((((((........)))).))	chr5:5463595-5463877(+)$1	1	186	207	14.3111
((((((........)))))))	chr4:151792432-151792664(-)$1	1	8	29	15.1300
((((((........)))))).	chr17:37565320-37565626(-)$1	1	249	270	12.8774
(.((((........)))).))	chr12:6710558-6710795(-)$1	1	130	151	14.7143
(((.((........)).))))	chr10:123845700-123845981(+)$1	1	195	216	15.2994
.(.(((........))).)((	chr2:48025833-48026110(+)$1	1	73	94	14.5789
((..((........))..)))	chr17:65343160-65343467(-)$1	1	62	83	15.3419
(..(((........))))).)	chr17:73234644-73234899(-)$1	1	125	146	14.6634
((((((........)).))))	chr2:73682270-73682523(+)$1	1	62	83	14.9774
((((((........)))))))	chr1:39878319-39878557(+)$1	1	66	87	15.2569
((((((........)))))))	chr5:140032542-140032830(+)$1	1	198	219	15.7553
((((((........)))..))	chr1:155450836-155451060(-)$1	1	129	150	15.5177
(((.((........))..)))	chr10:70404571-70404828(+)$1	1	93	114	15.6567
(((.((........)).)).)	chr14:92470245-92470490(-)$1	1	181	202	14.0550
((((((........)))))))	chr10:64973809-64974065(-)$1	1	68	89	15.1300
(((.((........)))))))	chrX:76939027-76939355(-)$1	1	204	225	15.0675
..((((........)))).))	chr1:171510998-171511249(+)$1	1	170	191	14.5297
(...((........))...))	chr1:214819557-214819784(+)$1	1	186	207	16.2467
.(((((........)))))))	chr19:12015634-12015883(+)$1	1	168	189	13.7454
((((((........))).)))	chr10:101591655-101591870(+)$1	1	154	175	14.9794
(..(((........)))))))	chr16:24583056-24583307(+)$1	1	74	95	15.8589
((..((........))..)))	chr8:100568579-100568815(+)$1	1	124	145	15.8127

#PSSM
e : 0.20	g : 0.16	f : 0.14	c : 0.11	d : 0.09	= : 0.08	" : 0.04	b : 0.03	i : 0.03	# : 0.01	a : 0.01	! : 0.01	: : 0.01	[ : 0.01	
e : 0.14	f : 0.12	! : 0.12	g : 0.12	" : 0.09	c : 0.08	[ : 0.08	= : 0.06	d : 0.04	b : 0.03	i : 0.03	# : 0.01	a : 0.01	
d : 0.19	! : 0.16	g : 0.11	e : 0.11	f : 0.08	" : 0.08	= : 0.06	[ : 0.06	c : 0.06	i : 0.03	a : 0.01	b : 0.01	
c : 0.30	[ : 0.16	d : 0.14	g : 0.09	f : 0.06	= : 0.06	! : 0.04	" : 0.04	i : 0.03	e : 0.03	
c : 0.30	b : 0.27	d : 0.14	g : 0.08	f : 0.06	= : 0.06	i : 0.03	[ : 0.01	e : 0.01	
c : 0.30	b : 0.27	d : 0.14	g : 0.08	f : 0.06	= : 0.06	i : 0.03	a : 0.01	e : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.30	b : 0.27	d : 0.14	g : 0.08	f : 0.06	= : 0.06	i : 0.03	a : 0.01	e : 0.01	
c : 0.30	b : 0.27	d : 0.14	g : 0.08	f : 0.06	= : 0.06	i : 0.03	] : 0.01	e : 0.01	
c : 0.30	d : 0.14	] : 0.12	g : 0.09	f : 0.06	= : 0.06	2 : 0.06	3 : 0.04	e : 0.04	i : 0.03	
d : 0.17	2 : 0.14	] : 0.14	e : 0.11	g : 0.09	f : 0.08	3 : 0.08	= : 0.06	i : 0.03	b : 0.03	c : 0.01	6 : 0.01	
e : 0.16	f : 0.12	g : 0.12	2 : 0.09	3 : 0.08	] : 0.08	= : 0.06	c : 0.06	b : 0.04	d : 0.04	i : 0.03	4 : 0.01	> : 0.01	6 : 0.01	a : 0.01	
e : 0.22	g : 0.16	f : 0.12	c : 0.11	d : 0.09	= : 0.08	3 : 0.03	i : 0.03	] : 0.03	4 : 0.01	b : 0.01	> : 0.01	2 : 0.01	a : 0.01	6 : 0.01	
e : 0.24	g : 0.16	d : 0.14	c : 0.11	= : 0.08	f : 0.08	6 : 0.03	i : 0.03	4 : 0.01	> : 0.01	2 : 0.01	a : 0.01	] : 0.01	: : 0.01	b : 0.01	

#score	934.7968475786107
#seq	62
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_transcript_m3_run1.txt

#BEAR
bbccc[bb[gggggggmmmmggggggg]bbcccA	chr17:76969066-76969296(-)$1	230	90	124	11.0057
=======iiiiiiiiimmmmiiiiiiiii]====	chr6:31896507-31896775(+)$1	268	84	118	14.2598
[dddd"""ddddddddmmmmdddd]dddd333dd	chr9:32572845-32573120(-)$1	275	32	66	10.3828
========####cccmmmmccc]===========	chr6:24495104-24495440(+)$1	336	180	214	13.8829
cffffff$$$$$a[bbmmmmbb]a4444ffffff	chr12:69745966-69746177(+)$1	211	65	99	13.3435
ccc:ccc!!gggggggmmmmgggggggccceeee	chr1:87380424-87380699(+)$1	275	96	130	11.7112
ggggg[==========mmmm==========>>>>	chr10:7830067-7830325(+)$1	258	38	72	14.1567
ffffffggggggg[bbmmmmbb]ggggggg22ff	chr7:100205516-100205775(+)$1	259	187	221	12.7130
iiiii:==========mmmm==========gggg	chr16:3767321-3767592(-)$1	271	116	150	13.7960
$$$$$eeeee####bbmmmmbb4444eeeee444	chr8:97614522-97614751(+)$1	229	135	169	12.2591
dddd$$$$$gggggggmmmmggggggg]ddddhh	chr18:25532078-25532361(-)$1	283	98	132	11.1649
gggccc"""ccc[cccmmmmccc]ccc4444ccc	chr12:53345282-53345530(+)$1	248	19	53	14.7401
hhhbb$$$$$ccc[bbmmmmbb]ccc4444bb]h	chr5:137089447-137089690(-)$1	243	6	40	12.9449
"""ffffff[bb[cccmmmmccc]bb]ffffff4	chr9:140137460-140137705(+)$1	245	125	159	11.8866
ggggg[a"""ccc[bbnnnnnbbccc4444a]gg	chr9:102861144-102861380(-)$1	236	25	59	11.1250
!dddd$$$$$ffffffmmmmffffff333dddd2	chr6:86352547-86352816(-)$1	269	126	160	10.9309
dddeeeee[ccc[cccmmmmccc]ccceeeee:f	chr9:124080842-124081083(+)$1	241	21	55	11.5463
bb[ccciiiiiiiiimmmmiiiiiiiii]ccc]b	chr12:9230300-9230520(-)$1	220	1	35	11.5403
hhhhhhh!!ccc!!bbmmmmbb22ccc4444hhh	chr1:109865483-109865805(-)$1	322	124	158	12.9393
cccccc[ffffff!!ammmma22ffffff]ccc2	chr19:11556986-11557236(+)$1	250	187	221	11.4099
bb[bb[ddddbba[bbmmmmbb]a]bb]ddddbb	chr14:101193152-101193370(+)$1	218	74	108	11.2600
!ccc####eeeeeccclllccc]eeeee22ccc]	chr19:57326338-57326589(-)$1	251	22	56	9.8771
cc$$$$$ccc"""cccmmmmccc]ccc4444ccc	chr1:161192159-161192394(-)$1	235	11	45	13.9142
====[ccc"""bb[bbmmmmbb]bb4444ccc]=	chr16:24551002-24551291(+)$1	289	225	259	14.5582
ccc!!bb[dddd[cccmmmmcccdddd4444bb2	chr11:62623584-62623855(+)$1	271	173	207	11.9684
[dddd!!ccc####cccmmmmccc4444cccddd	chr9:136232760-136232967(-)$1	207	116	150	11.5613
ee[bb[bb[bb!!cccmmmmccc22bb]bb]bbe	chr8:145640032-145640353(-)$1	321	236	270	11.4421
ee[eeeee!!bb[cccmmmmccc]bb22eeeee]	chr7:45928269-45928477(+)$1	208	67	101	12.3069
###ggggggg[bb[bbmmmmbb333bb333gggg	chr19:49119035-49119274(-)$1	239	156	190	14.2425
c[ffffffccc[ddddmmmmdddd]ccc]fffff	chr6:41707537-41707780(-)$1	243	124	158	10.7921
ccc:iiiiiiiii[bbmmmmbb]iiiiiiiii::	chr19:15226753-15226980(-)$1	227	87	121	11.9166
dddd[a!!ccc[ccc[allla]cccccc22a]dd	chr19:6718024-6718267(-)$1	243	31	65	10.0918
cdddd[cccbb[ddddmmmmdddd333bb]ccc]	chr17:7387943-7388198(+)$1	255	144	178	11.2547
[bb[cccbb[ccc[bbmmmmbb]ccc]bb]cccb	chr16:31105794-31106041(-)$1	247	39	73	12.7778
!!==========!!bbmmmmbb]==========2	chr3:98312107-98312486(-)$1	379	183	217	15.9781
======[a$$$$$cccmmmmccca]=========	chr11:61113229-61113471(+)$1	242	31	65	14.5218
beeeeeccc[a"""bbmmmmbb4444a]ccc]ee	chr2:130947942-130948222(+)$1	280	139	173	13.8724
:dddd[bb"""ddddammmma]dddd4444bb]d	chr17:1680462-1680728(+)$1	266	229	263	10.7832
fff"""eeeee!!cccmmmmccc]eeeeefffff	chr1:20811991-20812244(-)$1	253	151	185	12.0252
eeeee[dddd[a!!bbmmmmbb22addddeeeee	chr5:73981051-73981362(+)$1	311	219	253	11.7536
ff[a[bb[a[ccc[bbmmmmbbccca]bb]afff	chr12:8088567-8088860(-)$1	293	109	143	13.1072
g[bb[ggggggg!!bbmmmmbb]ggggggg]bb]	chr16:57416558-57416832(+)$1	274	215	249	13.2692
iiiiiiii!!eeeeemmmmeeeee]iiiiiiiii	chr1:11985967-11986249(-)$1	282	34	68	10.4627
e"""a[ccc[ffffffmmmmffffff]ccca22e	chr11:118918908-118919178(-)$1	270	58	92	11.4222
eeeee[==========mmmm==========22ee	chr3:51422723-51422954(+)$1	231	67	101	14.0355
fffff####eeeeebbmmmmbb]eeeee]fffff	chr7:75614136-75614377(+)$1	241	44	78	12.0266
eeee!!bb####cccmmmmccc4444bb22eeee	chr10:7786070-7786289(+)$1	219	1	35	11.0772
cc[ccc!!bb[eeeeemmmmeeeeebb]ccc]cc	chr17:40761161-40761450(-)$1	289	178	212	11.0523
bb[ffffff[bb[cccmmmmcccbb4444fffff	chr2:220407983-220408289(-)$1	306	123	157	12.0512
ee####ccc[ccc[bbmmmmbb333cccccc22e	chr3:58135489-58135744(+)$1	255	145	179	14.1297
dd[ccc"""bb[a[bbmmmmbb]a]bb333cccd	chr5:131530553-131530801(-)$1	248	186	220	14.6785
ccc[ccc"""ffffffmmmmffffff22ccc333	chrX:153581384-153581616(-)$1	232	177	211	12.3192
dd[ggggggg"""cccmmmmccc4444ggggggg	chr12:56473900-56474171(+)$1	271	78	112	14.1505
b!!eeeee####ddddmmmmdddd22eeeee]bb	chr16:30080585-30080797(+)$1	212	162	196	10.6273
cc!!eeeee"""a[bbmmmmbba22eeeee22cc	chr19:6696313-6696538(-)$1	225	64	98	13.0497
eeeeeee!!ccc[cccmmmmccc]ccc]eeeee:	chr2:98262522-98262750(+)$1	228	164	198	12.2046
fff!!eeeeeccc!!ammmma22ccc]eeeee22	chr17:7212953-7213219(+)$1	266	209	243	11.3914
cbb!!ffffff!!cccmmmmcccffffff]bb]c	chr6:132271421-132271646(-)$1	225	186	220	11.6495
DDD============ammmma]============	chr10:74034540-74034779(+)$1	239	7	41	11.9696

#otherMatches

#Seq PSSM
GUGAAUGUGCAGGGCGAGGACGCCCUGGGCUUCU	chr17:76969066-76969296(-)$1	230	90	124	11.0057
AGCUUCGAGUGUGAGGAUGGCUUCAUAUUGCGGG	chr6:31896507-31896775(+)$1	268	84	118	14.2598
GUGUCCUUUUGCGUUGGUACCAGCGGCGACAUGA	chr9:32572845-32573120(-)$1	275	32	66	10.3828
GGCUGccgccuccgcccccgcgccggcggccugg	chr6:24495104-24495440(+)$1	336	180	214	13.8829
GCUUGUGCAAAGAGGGUUGUCCGUGAUCCACAAG	chr12:69745966-69746177(+)$1	211	65	99	13.3435
GACACCAGCGGCGUUGGUGAUAGCGCCUGGGGGA	chr1:87380424-87380699(+)$1	275	96	130	11.7112
UGGGGAGCUUCGGCGCAUGCGCGCUGAGGCCUGC	chr10:7830067-7830325(+)$1	258	38	72	14.1567
GGGCUGCUGCGUCCCAGGACUGAGACGCAGGCCA	chr7:100205516-100205775(+)$1	259	187	221	12.7130
GGCCGCCGCCUGCGGCCUUUGCUGCGGGCGCCGG	chr16:3767321-3767592(-)$1	271	116	150	13.7960
ACAUCUCGACCACUUCCAAAGAUACUGUUGACUA	chr8:97614522-97614751(+)$1	229	135	169	12.2591
GACUAUGAAGGCAGUGGCUCCACUGCUGGGUCCU	chr18:25532078-25532361(-)$1	283	98	132	11.1649
GGUUGACCGUGGAGGUAGAUGCCCCCAAAUCUCA	chr12:53345282-53345530(+)$1	248	19	53	14.7401
CGGCCACUUUGAGGCCUUUGGGACUCUGACGGAC	chr5:137089447-137089690(-)$1	243	6	40	12.9449
CGCCAUGGCCGCUACCUGACGGUUGCCGCCGUGU	chr9:140137460-140137705(+)$1	245	125	159	11.8866
UUUCCCGAAGUGCACCGAGGUGGGCAGGACCCGG	chr9:102861144-102861380(-)$1	236	25	59	11.1250
ACCGGGAGCGCGCUCGGAGGCGAGUGGAACUGGA	chr6:86352547-86352816(-)$1	269	126	160	10.9309
GAUGGGGUAUCUGAGGCUCCCCUGGGGACCCCUG	chr9:124080842-124081083(+)$1	241	21	55	11.5463
UGCUGUGAAGUGGUUAUAAAACCAUUUUGACAAC	chr12:9230300-9230520(-)$1	220	1	35	11.5403
GGCUGCAUUUUGGGCUACAAAGAACAGUUUCUGC	chr1:109865483-109865805(-)$1	322	124	158	12.9393
GGCUGCCCCUUGGUUGGGGACUUCUAGGGAGCAU	chr19:11556986-11557236(+)$1	250	187	221	11.4099
gcggcagcuccccggcagcggcgguggAGAGCGC	chr14:101193152-101193370(+)$1	218	74	108	11.2600
GGAGACAAUUGAAGACCCUGUCAUUCAAGGCUCA	chr19:57326338-57326589(-)$1	251	22	56	9.8771
CCACCACCACCAAGGCCCCUGCCAGUGCCUAGGG	chr1:161192159-161192394(-)$1	235	11	45	13.9142
UUGUGUCCgaggcggcggcggcggcggggggagg	chr16:24551002-24551291(+)$1	289	225	259	14.5582
CUGAAGCCUCGAUCGCCGUCGUGUCGAUUCCGCG	chr11:62623584-62623855(+)$1	271	173	207	11.9684
UUCUGGUUGGUUUUAGUAUACGCUCCUUCUAcag	chr9:136232760-136232967(-)$1	207	116	150	11.5613
AGUCAGAGAGUGAGUGCCCACGCCGACAUUGUGC	chr8:145640032-145640353(-)$1	321	236	270	11.4421
AGUGCGCGCCCUGCUCCGCCGAGAAGCUCGCGCU	chr7:45928269-45928477(+)$1	208	67	101	12.3069
CCAGCCCUGCCCUCUCCCCAGACUCAGCCUGCAG	chr19:49119035-49119274(-)$1	239	156	190	14.2425
UGGUGUUCUGAGGGUUGCCAGGCCAUCGUGGACA	chr6:41707537-41707780(-)$1	243	124	158	10.7921
GGUCCUCUUAGGGGCCUUUGGGACUCUGGGAGUU	chr19:15226753-15226980(-)$1	227	87	121	11.9166
GAGGGCGGGGCACCGGCGUGGGCGGGCUAGGGUC	chr19:6718024-6718267(-)$1	243	31	65	10.0918
ACGGGGGUGGCCCCCCCUCGGGGGACAGCGCAUG	chr17:7387943-7388198(+)$1	255	144	178	11.2547
CUGACGGGCUUAGUGCUCUCGCUCUACGCGCUGC	chr16:31105794-31106041(-)$1	247	39	73	12.7778
GUGGCGCGGGGCGGCUGCGGAGGGCCCCGCGCCU	chr3:98312107-98312486(-)$1	379	183	217	15.9781
CUGUAAGUCUAAAGAGCACCCUCGGUUGCAGGGC	chr11:61113229-61113471(+)$1	242	31	65	14.5218
CCUGGCGGAACGCAGCAGCCGCGAAGGAUCCAGC	chr2:130947942-130948222(+)$1	280	139	173	13.8724
AGGGGCCCUUCUCUUCAUUGGCAAGAUUCUGGAC	chr17:1680462-1680728(+)$1	266	229	263	10.7832
GAGCGCAGCGCAGCGCAGCCGCGGGCGCUCUCCG	chr1:20811991-20812244(-)$1	253	151	185	12.0252
GGUGAAGAUGACCCCGAACCUGCUGCAUCUCGCC	chr5:73981051-73981362(+)$1	311	219	253	11.7536
UCCUGAGGACGUGGAGAAAACUUGCUGCUGAGAA	chr12:8088567-8088860(-)$1	293	109	143	13.1072
GCGGUGGGGCUGCUGGCCUUCCUUGGCCUCCUCU	chr16:57416558-57416832(+)$1	274	215	249	13.2692
GCCUCCUGCUGCUGCUUCUGUGGUUUGGGGGGUc	chr1:11985967-11986249(-)$1	282	34	68	10.4627
GCUUGUGGGUGCAUGUGUUUACAUGUCCCCCUCC	chr11:118918908-118919178(-)$1	270	58	92	11.4222
CACGCAGGGGCUGGCGGUGGCGCUGGCUCUGAGC	chr3:51422723-51422954(+)$1	231	67	101	14.0355
CGUACCAACGUGCUGUACGAGCUGGCGCAGUACG	chr7:75614136-75614377(+)$1	241	44	78	12.0266
GUGCCAAGAAGCCCAACAAUGGAAAACUAAGCAC	chr10:7786070-7786289(+)$1	219	1	35	11.0772
AUGUGUCAGGCUCCUGGGAGCGGGACCAGCAGGU	chr17:40761161-40761450(-)$1	289	178	212	11.0523
CCUGGGUGGAGGAGCCGUGCGGCCCAGGCCCGCC	chr2:220407983-220408289(-)$1	306	123	157	12.0512
GGACCUGGAAGAUGGCACCUGCAAAGUCUCCUAC	chr3:58135489-58135744(+)$1	255	145	179	14.1297
AGUGUCUUAAGGGGUAGUGUUGGUGUUGGUGGCC	chr5:131530553-131530801(-)$1	248	186	220	14.6785
CUCUGGUCAGGGCCUUCACGAAGGCCACACCUUU	chrX:153581384-153581616(-)$1	232	177	211	12.3192
AGCAGCCACCAAUUCGCCAGCGGUUCAGGUGGCU	chr12:56473900-56474171(+)$1	271	78	112	14.1505
GCCGGGGACCCUGGGGCUAACCCCUAUCCUCUCC	chr16:30080585-30080797(+)$1	212	162	196	10.6273
GGAGUGCAGAAAGAGGACAUCCCACCUGCAGACC	chr19:6696313-6696538(-)$1	225	64	98	13.0497
UGUUGCCCUCCCAGGGUGGUCCCAGGGCGGCAAA	chr2:98262522-98262750(+)$1	228	164	198	12.2046
UAUCUUUGGCGCUCCCAGCAGCAAGCUGCCAACA	chr17:7212953-7213219(+)$1	266	209	243	11.3914
CCAAACCGUGGUUGGGCCUGCCCUCGCGGGUGAG	chr6:132271421-132271646(-)$1	225	186	220	11.6495
CAGGAGAGCCUGGCCCAGGCGCGGCUGGGCUCUC	chr10:74034540-74034779(+)$1	239	7	41	11.9696

#DB
))(((.((.(((((((....))))))).))))))	chr17:76969066-76969296(-)$1	1	90	124	11.0057
((((((((((((((((....))))))))).))))	chr6:31896507-31896775(+)$1	1	84	118	14.2598
.((((...((((((((....)))).))))...))	chr9:32572845-32573120(-)$1	1	32	66	10.3828
((((((((....(((....))).)))))))))))	chr6:24495104-24495440(+)$1	1	180	214	13.8829
(((((((.....(.((....)).)....))))))	chr12:69745966-69746177(+)$1	1	65	99	13.3435
))).(((..(((((((....))))))))))((((	chr1:87380424-87380699(+)$1	1	96	130	11.7112
(((((.((((((((((....))))))))))....	chr10:7830067-7830325(+)$1	1	38	72	14.1567
(((((((((((((.((....)).)))))))..))	chr7:100205516-100205775(+)$1	1	187	221	12.7130
))))).((((((((((....))))))))))((((	chr16:3767321-3767592(-)$1	1	116	150	13.7960
.....(((((....((....))....)))))...	chr8:97614522-97614751(+)$1	1	135	169	12.2591
((((.....(((((((....))))))).))))((	chr18:25532078-25532361(-)$1	1	98	132	11.1649
)))(((...(((.(((....))).)))....)))	chr12:53345282-53345530(+)$1	1	19	53	14.7401
(((((.....(((.((....)).)))....)).)	chr5:137089447-137089690(-)$1	1	6	40	12.9449
...((((((.((.(((....))).)).)))))).	chr9:140137460-140137705(+)$1	1	125	159	11.8866
(((((.(...(((.((.....)))))....).))	chr9:102861144-102861380(-)$1	1	25	59	11.1250
.((((.....((((((....))))))...)))).	chr6:86352547-86352816(-)$1	1	126	160	10.9309
)))(((((.(((.(((....))).)))))))).(	chr9:124080842-124081083(+)$1	1	21	55	11.5463
((.((((((((((((....))))))))).))).)	chr12:9230300-9230520(-)$1	1	1	35	11.5403
(((((((..(((..((....))..)))....)))	chr1:109865483-109865805(-)$1	1	124	158	12.9393
((((((.((((((..(....)..)))))).))).	chr19:11556986-11557236(+)$1	1	187	221	11.4099
((.((.(((((((.((....)).).)).))))))	chr14:101193152-101193370(+)$1	1	74	108	11.2600
.(((....((((((((...))).)))))..))).	chr19:57326338-57326589(-)$1	1	22	56	9.8771
((.....(((...(((....))).)))....)))	chr1:161192159-161192394(-)$1	1	11	45	13.9142
((((.(((...((.((....)).))....))).)	chr16:24551002-24551291(+)$1	1	225	259	14.5582
(((..((.((((.(((....)))))))....)).	chr11:62623584-62623855(+)$1	1	173	207	11.9684
.((((..(((....(((....)))....))))))	chr9:136232760-136232967(-)$1	1	116	150	11.5613
((.((.((.((..(((....)))..)).)).)))	chr8:145640032-145640353(-)$1	1	236	270	11.4421
((.(((((..((.(((....))).))..))))).	chr7:45928269-45928477(+)$1	1	67	101	12.3069
...(((((((.((.((....))...))...))))	chr19:49119035-49119274(-)$1	1	156	190	14.2425
(.(((((((((.((((....)))).))).)))))	chr6:41707537-41707780(-)$1	1	124	158	10.7921
))).(((((((((.((....)).)))))))))..	chr19:15226753-15226980(-)$1	1	87	121	11.9166
((((.(..(((.(((.(...).))))))..).))	chr19:6718024-6718267(-)$1	1	31	65	10.0918
(((((.(((((.((((....))))...)).))).	chr17:7387943-7388198(+)$1	1	144	178	11.2547
.((.(((((.(((.((....)).))).)).))))	chr16:31105794-31106041(-)$1	1	39	73	12.7778
..((((((((((..((....)).)))))))))).	chr3:98312107-98312486(-)$1	1	183	217	15.9781
((((((.(.....(((....)))).)))))))))	chr11:61113229-61113471(+)$1	1	31	65	14.5218
(((((((((.(...((....))....).))).))	chr2:130947942-130948222(+)$1	1	139	173	13.8724
.((((.((...(((((....).))))....)).)	chr17:1680462-1680728(+)$1	1	229	263	10.7832
(((...(((((..(((....))).))))))))))	chr1:20811991-20812244(-)$1	1	151	185	12.0252
(((((.((((.(..((....))..))))))))))	chr5:73981051-73981362(+)$1	1	219	253	11.7536
((.(.((.(.(((.((....)))))).)).))))	chr12:8088567-8088860(-)$1	1	109	143	13.1072
(.((.(((((((..((....)).))))))).)).	chr16:57416558-57416832(+)$1	1	215	249	13.2692
((((((((..(((((....))))).)))))))))	chr1:11985967-11986249(-)$1	1	34	68	10.4627
(...(.(((.((((((....)))))).))))..)	chr11:118918908-118919178(-)$1	1	58	92	11.4222
(((((.((((((((((....))))))))))..))	chr3:51422723-51422954(+)$1	1	67	101	14.0355
(((((....(((((((....)).))))).)))))	chr7:75614136-75614377(+)$1	1	44	78	12.0266
((((..((....(((....)))....))..))))	chr10:7786070-7786289(+)$1	1	1	35	11.0772
((.(((..((.(((((....))))))).))).))	chr17:40761161-40761450(-)$1	1	178	212	11.0523
((.((((((.((.(((....)))))....)))))	chr2:220407983-220408289(-)$1	1	123	157	12.0512
((....(((.(((.((....))...))))))..)	chr3:58135489-58135744(+)$1	1	145	179	14.1297
((.(((...((.(.((....)).).))...))))	chr5:131530553-131530801(-)$1	1	186	220	14.6785
(((.(((...((((((....))))))..)))...	chrX:153581384-153581616(-)$1	1	177	211	12.3192
((.(((((((...(((....)))....)))))))	chr12:56473900-56474171(+)$1	1	78	112	14.1505
(..(((((....((((....))))..))))).))	chr16:30080585-30080797(+)$1	1	162	196	10.6273
((..(((((...(.((....)))..)))))..))	chr19:6696313-6696538(-)$1	1	64	98	13.0497
))(((((..(((.(((....))).))).))))).	chr2:98262522-98262750(+)$1	1	164	198	12.2046
(((..((((((((..(....)..))).)))))..	chr17:7212953-7213219(+)$1	1	209	243	11.3914
(((..((((((..(((....))))))))).)).)	chr6:132271421-132271646(-)$1	1	186	220	11.6495
((((((((((((((((....).))))))))))))	chr10:74034540-74034779(+)$1	1	7	41	11.9696

#PSSM
c : 0.20	e : 0.13	b : 0.10	f : 0.08	d : 0.08	= : 0.06	g : 0.06	[ : 0.05	! : 0.05	i : 0.03	h : 0.03	$ : 0.01	" : 0.01	# : 0.01	: : 0.01	D : 0.01	
d : 0.16	c : 0.15	e : 0.13	b : 0.10	f : 0.10	= : 0.06	g : 0.05	i : 0.03	h : 0.03	" : 0.03	[ : 0.03	! : 0.03	$ : 0.01	# : 0.01	D : 0.01	
[ : 0.15	d : 0.13	c : 0.11	f : 0.10	= : 0.08	e : 0.08	g : 0.05	b : 0.05	i : 0.03	$ : 0.03	h : 0.03	" : 0.03	# : 0.03	! : 0.03	D : 0.01	
e : 0.13	c : 0.11	d : 0.11	= : 0.10	f : 0.10	g : 0.06	b : 0.06	! : 0.06	: : 0.03	i : 0.03	$ : 0.03	[ : 0.03	" : 0.03	h : 0.01	a : 0.01	# : 0.01	
c : 0.15	e : 0.13	f : 0.10	= : 0.08	d : 0.08	g : 0.06	[ : 0.06	! : 0.06	i : 0.05	$ : 0.05	b : 0.05	# : 0.03	h : 0.01	" : 0.01	a : 0.01	
[ : 0.16	c : 0.15	e : 0.13	f : 0.10	= : 0.08	$ : 0.06	# : 0.05	g : 0.05	" : 0.03	b : 0.03	! : 0.03	i : 0.03	: : 0.01	h : 0.01	a : 0.01	
c : 0.13	e : 0.13	= : 0.11	b : 0.10	f : 0.08	g : 0.06	$ : 0.06	" : 0.05	i : 0.05	! : 0.05	[ : 0.03	d : 0.03	# : 0.03	a : 0.01	h : 0.01	
e : 0.11	c : 0.11	= : 0.10	b : 0.08	" : 0.08	! : 0.08	f : 0.08	i : 0.06	$ : 0.06	g : 0.06	d : 0.03	# : 0.03	[ : 0.03	a : 0.01	
c : 0.13	" : 0.10	$ : 0.08	! : 0.08	= : 0.08	e : 0.08	d : 0.06	# : 0.06	g : 0.06	f : 0.06	[ : 0.05	i : 0.05	b : 0.03	a : 0.01	
c : 0.13	g : 0.11	[ : 0.11	= : 0.08	e : 0.08	" : 0.08	d : 0.06	$ : 0.06	b : 0.06	i : 0.05	# : 0.05	f : 0.03	! : 0.03	
c : 0.20	b : 0.11	g : 0.08	# : 0.08	= : 0.08	f : 0.08	" : 0.08	e : 0.06	i : 0.05	[ : 0.05	d : 0.03	$ : 0.03	a : 0.01	
c : 0.16	b : 0.10	g : 0.08	# : 0.08	= : 0.08	f : 0.06	e : 0.06	" : 0.06	[ : 0.06	i : 0.05	d : 0.05	! : 0.05	$ : 0.03	a : 0.01	
c : 0.15	[ : 0.11	! : 0.11	d : 0.08	g : 0.06	a : 0.06	= : 0.06	f : 0.06	e : 0.06	i : 0.05	" : 0.05	# : 0.03	b : 0.03	$ : 0.01	
c : 0.28	[ : 0.22	! : 0.10	d : 0.08	= : 0.06	g : 0.05	f : 0.05	e : 0.05	i : 0.03	# : 0.03	" : 0.01	
b : 0.33	c : 0.30	d : 0.08	= : 0.06	g : 0.05	f : 0.05	i : 0.03	! : 0.03	e : 0.03	
b : 0.33	c : 0.25	d : 0.06	m : 0.06	a : 0.06	g : 0.05	= : 0.05	f : 0.05	i : 0.01	[ : 0.01	e : 0.01	
m : 0.93	n : 0.01	l : 0.01	c : 0.01	a : 0.01	
m : 0.94	l : 0.03	n : 0.01	
m : 0.94	l : 0.03	n : 0.01	
m : 0.88	c : 0.05	n : 0.01	i : 0.01	l : 0.01	e : 0.01	
b : 0.32	c : 0.27	a : 0.08	d : 0.06	g : 0.05	= : 0.05	f : 0.05	i : 0.03	e : 0.03	n : 0.01	m : 0.01	
b : 0.33	c : 0.28	d : 0.06	g : 0.05	= : 0.05	f : 0.05	] : 0.05	i : 0.03	2 : 0.03	e : 0.03	
c : 0.27	] : 0.22	d : 0.08	= : 0.06	2 : 0.06	g : 0.05	4 : 0.05	f : 0.05	i : 0.03	3 : 0.03	e : 0.03	b : 0.01	a : 0.01	
] : 0.11	c : 0.11	d : 0.10	= : 0.10	g : 0.08	f : 0.08	a : 0.06	4 : 0.06	2 : 0.06	e : 0.06	i : 0.05	b : 0.03	3 : 0.03	
c : 0.18	] : 0.10	= : 0.10	4 : 0.10	g : 0.08	f : 0.08	b : 0.06	e : 0.06	i : 0.05	2 : 0.05	3 : 0.05	d : 0.03	a : 0.01	
c : 0.20	4 : 0.13	= : 0.11	b : 0.11	g : 0.08	f : 0.08	i : 0.06	d : 0.06	e : 0.06	3 : 0.01	a : 0.01	2 : 0.01	
4 : 0.13	c : 0.13	= : 0.11	e : 0.10	b : 0.10	g : 0.08	] : 0.08	i : 0.06	d : 0.05	3 : 0.03	f : 0.03	2 : 0.03	a : 0.01	
4 : 0.18	e : 0.13	] : 0.11	= : 0.11	c : 0.08	i : 0.06	b : 0.06	g : 0.05	f : 0.05	3 : 0.05	d : 0.03	2 : 0.03	
4 : 0.15	e : 0.13	= : 0.11	c : 0.11	b : 0.08	d : 0.06	f : 0.06	i : 0.05	g : 0.05	3 : 0.05	] : 0.05	2 : 0.05	
c : 0.15	e : 0.13	= : 0.11	4 : 0.11	] : 0.10	f : 0.10	3 : 0.05	g : 0.05	d : 0.05	2 : 0.05	b : 0.03	i : 0.03	
c : 0.22	e : 0.15	f : 0.10	= : 0.08	4 : 0.06	a : 0.06	2 : 0.05	g : 0.05	d : 0.05	b : 0.05	] : 0.03	i : 0.03	3 : 0.01	> : 0.01	
c : 0.16	f : 0.11	e : 0.11	b : 0.10	= : 0.08	2 : 0.08	] : 0.08	d : 0.06	g : 0.05	3 : 0.03	i : 0.03	> : 0.01	4 : 0.01	h : 0.01	
c : 0.16	f : 0.13	e : 0.11	= : 0.08	] : 0.08	b : 0.08	d : 0.06	g : 0.06	2 : 0.05	h : 0.03	: : 0.03	> : 0.01	4 : 0.01	i : 0.01	3 : 0.01	
f : 0.13	e : 0.13	= : 0.08	d : 0.08	c : 0.08	2 : 0.08	g : 0.06	b : 0.06	] : 0.06	h : 0.05	4 : 0.03	: : 0.03	A : 0.01	> : 0.01	i : 0.01	3 : 0.01	

#score	729.3139312592846
#seq	59
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565RQI_SSB_CDS_m1_run2.txt

#BEAR
bbiiiiiiiiidddd[eeeeesssssssssseeeee]ddd	chr21:47558657-47558894(-)$1	237	139	179	26.0994
dddccc[eeeee"""eeeeewwwwwwwwwwwwwweeeee2	chr16:28883203-28883406(+)$1	203	121	161	30.2916
[ccc"""hhhhhhhh[bbbbwwwwwwwwwwwwwwbb]bb]	chr13:114018197-114018435(-)$1	238	37	77	30.9246

#otherMatches

#Seq PSSM
UCUGGGGAGUUGGUGGCCAGGAUCCCGAGUACCUGGGUGC	chr21:47558657-47558894(-)$1	237	139	179	26.0994
CAUGUCUCCAGGCCUGGGUGCCUACCUUCCUGACCACCUC	chr16:28883203-28883406(+)$1	203	121	161	30.2916
UGGCCUCGCUCGGUGCGCGCCUCCCUCCCCGCAUGCAGCC	chr13:114018197-114018435(-)$1	238	37	77	30.9246

#DB
)))))))))))((((.(((((..........))))).)))	chr21:47558657-47558894(-)$1	1	139	179	26.0994
)))(((.(((((...(((((..............))))).	chr16:28883203-28883406(+)$1	1	121	161	30.2916
.(((...((((((((.((((..............)).)).	chr13:114018197-114018435(-)$1	1	37	77	30.9246

#PSSM
b : 0.33	d : 0.33	[ : 0.33	
b : 0.33	d : 0.33	c : 0.33	
i : 0.33	d : 0.33	c : 0.33	
c : 0.66	i : 0.33	
i : 0.33	c : 0.33	" : 0.33	
i : 0.33	c : 0.33	" : 0.33	
i : 0.33	[ : 0.33	" : 0.33	
i : 0.33	e : 0.33	h : 0.33	
i : 0.33	e : 0.33	h : 0.33	
i : 0.33	e : 0.33	h : 0.33	
i : 0.33	e : 0.33	h : 0.33	
d : 0.33	e : 0.33	h : 0.33	
d : 0.33	" : 0.33	h : 0.33	
d : 0.33	" : 0.33	h : 0.33	
d : 0.33	" : 0.33	h : 0.33	
[ : 0.66	e : 0.33	
e : 0.66	b : 0.33	
e : 0.66	b : 0.33	
e : 0.66	b : 0.33	
e : 0.66	b : 0.33	
w : 0.66	e : 0.33	
w : 0.66	s : 0.33	
w : 0.66	s : 0.33	
w : 0.66	s : 0.33	
w : 0.66	s : 0.33	
w : 0.66	s : 0.33	
w : 0.66	s : 0.33	
w : 0.66	s : 0.33	
w : 0.66	s : 0.33	
w : 0.66	s : 0.33	
w : 0.66	s : 0.33	
w : 0.66	e : 0.33	
w : 0.66	e : 0.33	
w : 0.66	e : 0.33	
e : 0.66	b : 0.33	
e : 0.66	b : 0.33	
] : 0.66	e : 0.33	
d : 0.33	e : 0.33	b : 0.33	
d : 0.33	e : 0.33	b : 0.33	
d : 0.33	2 : 0.33	] : 0.33	

#score	87.31569264303333
#seq	3
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456SOS_UTP18_transcript_m1_run1.txt

#BEAR
dddd!!ccc!!eeeeennnnneeeee22ccc]	chr20:26189972-26190251(-)$1	279	83	115	10.5174
!ccc####gggggggooooooggggggg333c	chr16:2819213-2819466(+)$1	253	62	94	14.3839
b[eeeee[a"""ddddmmmmdddd333a]eee	chr19:1408179-1408466(+)$1	287	151	183	10.1720
!!==========[bboooooobb=========	chr16:70563327-70563592(+)$1	265	68	100	15.0322
####bb!!gggggggooooooggggggg22bb	chr9:100777604-100777861(+)$1	257	16	48	13.4890
ff"""ccc[ffffffooooooffffff333cc	chr17:19015807-19016027(-)$1	220	162	194	13.6044
:dddd[eeeee[cccooooooccc22eeeee]	chr2:203155962-203156248(+)$1	286	181	213	11.8495
iiiiiiiii####bbnnnnnbb22iiiiiiii	chr17:80054937-80055240(-)$1	303	143	175	10.4883
!!a[a[============lll===========	chr7:5569700-5569980(-)$1	280	36	68	12.8210
===========[ccclllccc333========	chr11:75111337-75111658(+)$1	321	57	89	12.2231
f!!ccc####eeeeeooooooeeeee4444cc	chr22:22899783-22900056(-)$1	273	50	82	14.4565
====!!ccc"""eeeeemmmmeeeee4444cc	chr7:98479329-98479536(+)$1	207	38	70	11.1025
!bb[eeeee"""cccooooooccc333eeeee	chr11:62622002-62622223(-)$1	221	52	84	14.1024
ggggg==========oooooo==========3	chr10:101996745-101996999(-)$1	254	112	144	15.7447
ddd!!a[ccceeeeeooooooeeeee]ccca2	chr17:19093316-19093583(-)$1	267	143	175	13.5198
gggggggiiiiiiiiimmmmiiiiiiiii333	chr5:137896649-137896870(-)$1	221	173	205	11.1838
####bb!!gggggggooooooggggggg22bb	chr9:100777578-100777803(+)$1	225	42	74	13.4890
b!!ccc!!gggggggooooooggggggg]ccc	chr21:44479552-44479784(-)$1	232	114	146	14.4734
c"""dddd[ffffffooooooffffff]dddd	chr9:139621124-139621367(-)$1	243	50	82	12.0603
ff[ccc!!ccc[cccooooooccc]ccc22cc	chr17:80051553-80051788(-)$1	235	67	99	14.2682
#eeeee!!ccc[ccclllccc]ccc]eeeee2	chr20:2637165-2637383(+)$1	218	158	190	9.6536
==========[cccpppppppccc]=======	chr17:18965262-18965550(+)$1	288	153	185	9.8387
d!!a[ccc$$$$$ddddllldddd333ccc]a	chr11:65210937-65211206(+)$1	269	216	248	10.1624
eeeeeffffffddddoooooodddd]ffffff	chr3:128211693-128211976(+)$1	283	223	255	10.9378
:dddddddd[eeeeeooooooeeeeedddd33	chr17:19091313-19091517(+)$1	204	90	122	11.0826
:a!!eeeee!!ddddoooooodddd22eeeee	chr7:1488497-1488788(-)$1	291	189	221	12.1067
iiiiieeeee[ddddnnnnnddddeeeee22i	chr13:92001189-92001430(+)$1	241	91	123	9.4297
e[gggggggbb[cccooooooccc]bb]gggg	chr19:893461-893690(+)$1	229	176	208	13.6475
ddd!!a[ccceeeeeooooooeeeee]ccca2	chr17:19091310-19091513(+)$1	203	136	168	13.5198
b"""ccc!!ffffffooooooffffff22ccc	chr19:2271416-2271649(+)$1	233	143	175	13.3308
ggggggg!!ffffffooooooffffff333gg	chr2:97559874-97560144(-)$1	270	115	147	14.0298
ddeeeee$$$$$cccooooooccc4444eeee	chr1:173835351-173835603(-)$1	252	120	152	13.1600
)))))ccca!!ddddoooooodddd22a]ccc	chr16:1426158-1426406(-)$1	248	42	74	11.4009
d!!dddd!!ffffffooooooffffff22ddd	chr5:40832664-40832937(-)$1	273	50	82	12.2295
ggggg!!==========mmmm==========]	chr4:53578777-53579004(+)$1	227	84	116	12.0543
gggggg:eeeeeddddoooooodddd22eeee	chr7:5569357-5569611(-)$1	254	152	184	10.2122
[ggggggg[bb[ddddlllddddbbggggggg	chr6:133136369-133136604(+)$1	235	170	202	9.5046
fff::ccc[a[ccc[aooooooa]ccc]a]cc	chr14:105933354-105933611(+)$1	257	107	139	10.6015
===========[bbnnnnnbb]==========	chr12:6619516-6619761(+)$1	245	53	85	10.5437
ddd:hhhhhhhhcccooooooccc4444hhhh	chr19:2270123-2270370(+)$1	247	146	178	10.9985
ddd!!a[ccceeeeeooooooeeeee]ccca2	chr17:19091317-19091541(+)$1	224	129	161	13.5198
fff"""ccc"""cccmmmmccc4444ccc22f	chrX:20154138-20154359(-)$1	221	155	187	9.8640
ggggggg!!ddddrrrrrrrrrddddgggggg	chr11:122929521-122929760(-)$1	239	59	91	9.4508
eggggggg####cccnnnnnccc333gggggg	chr19:3982413-3982654(-)$1	241	102	134	12.1252
iiiiiiiii"""cccooooooccciiiiiiii	chr10:70514825-70515097(+)$1	272	58	90	15.7694
gggggggggggg[cccnnnnnccc22gggggg	chrX:135961286-135961534(-)$1	248	80	112	11.1504
====!!ccc"""eeeeemmmmeeeee4444cc	chr7:98479313-98479529(+)$1	216	54	86	11.1025
####ccc[ccc!!bboooooobb22ccc]ccc	chr7:1492783-1493046(-)$1	263	189	221	13.1445
$$eeeee$$$$$cccooooooccc333eeeee	chr2:203157698-203157926(+)$1	228	176	208	13.3944
:dddddddd[eeeeeooooooeeeeedddd33	chr17:19091288-19091510(+)$1	222	115	147	11.0826
[iiiiiiiiieeeeeooooooeeeee22iiii	chr9:136216142-136216394(+)$1	252	9	41	14.5163

#otherMatches

#Seq PSSM
GCGCGAGCGUUGGCUCCCCCUGGGCCUUUGCG	chr20:26189972-26190251(-)$1	279	83	115	10.5174
GCGAGCGGAGGUGAGUGCUGUCUUGCCUGAGU	chr16:2819213-2819466(+)$1	253	62	94	14.3839
CGGGGAGUCCAGGGCGCCGUCGCCGCCGCCUC	chr19:1408179-1408466(+)$1	287	151	183	10.1720
AUAUCGUUGCUUUCAUCAGCCUGAAGUGAUGA	chr16:70563327-70563592(+)$1	265	68	100	15.0322
AAAGUCAAUUUUUGUUACUGUACagaggagga	chr9:100777604-100777861(+)$1	257	16	48	13.4890
agagagguagcguuuucuccugagcgugaagc	chr17:19015807-19016027(-)$1	220	162	194	13.6044
AUGAUUUGUAUACUUAAAAGGGGGAAAUACAU	chr2:203155962-203156248(+)$1	286	181	213	11.8495
GCGCAGGUGAAGGGUGCCAGGCAACACCUGCG	chr17:80054937-80055240(-)$1	303	143	175	10.4883
GAGGCGCGCUCCGGGGGUGCCGCUCUCGGGGC	chr7:5569700-5569980(-)$1	280	36	68	12.8210
AGAGCAGUUUCUUGUUUUGCAUGUGGAACUGU	chr11:75111337-75111658(+)$1	321	57	89	12.2231
UUCCAGCAACUUCGCGGUGUGGUGAACUCUCU	chr22:22899783-22900056(-)$1	273	50	82	14.4565
guguguuuguguguguguguauaugCUUGUCA	chr7:98479329-98479536(+)$1	207	38	70	11.1025
UACUGUCAGAUGAUUUGAAUUGAUAAGCUGAU	chr11:62622002-62622223(-)$1	221	52	84	14.1024
CCUUACAGACAGGCUGACACAGGCUUGUCUGG	chr10:101996745-101996999(-)$1	254	112	144	15.7447
gcuuucuggcguugcuuggcugcaacugccgu	chr17:19093316-19093583(-)$1	267	143	175	13.5198
AAAUAGGAUUAUCUUGGACCUAAGAUAGUGAC	chr5:137896649-137896870(-)$1	221	173	205	11.1838
AAAGUCAAUUUUUGUUACUGUACagaggagga	chr9:100777578-100777803(+)$1	225	42	74	13.4890
CAGAGAGCGAGCAUGAGAGGACGUGUUUAUCU	chr21:44479552-44479784(-)$1	232	114	146	14.4734
CGUUGCAGCUGUGGCUGCCGUGUCACAUCUGU	chr9:139621124-139621367(-)$1	243	50	82	12.0603
CAGAGCCGGGUGGGUGGGUGGGCUGGCUGCGC	chr17:80051553-80051788(-)$1	235	67	99	14.2682
ACUCUGGGUCUGAGUGAAGCUGAGGGUAGAGG	chr20:2637165-2637383(+)$1	218	158	190	9.6536
gagggagagaacgcggucugagugguUUUUCC	chr17:18965262-18965550(+)$1	288	153	185	9.8387
CAAGGCAGCUUUUGGUUUGCAACCCCACUGGC	chr11:65210937-65211206(+)$1	269	216	248	10.1624
GUCCGCCUGGUGGGCGACGGGGCCCUGCUAGG	chr3:128211693-128211976(+)$1	283	223	255	10.9378
ccacgaggaagagagguagcguuuucuccuga	chr17:19091313-19091517(+)$1	204	90	122	11.0826
CCUGUGCAGAUGGGACCGUGAUCCCCGCUGCA	chr7:1488497-1488788(-)$1	291	189	221	12.1067
UGGGGGGGUUGCCGCGUCCGGCGGGGCCUGAC	chr13:92001189-92001430(+)$1	241	91	123	9.4297
cccaggcuggaaugcaauggcgcgaucuuagc	chr19:893461-893690(+)$1	229	176	208	13.6475
gcuuucuggcguugcuuggcugcaacugccgu	chr17:19091310-19091513(+)$1	203	136	168	13.5198
CUCUGGGGCCACAGGUACUUUCUUGUGCACCU	chr19:2271416-2271649(+)$1	233	143	175	13.3308
GGGGGAGCUGGGUAUGUUUGGGUACCCCUCCU	chr2:97559874-97560144(-)$1	270	115	147	14.0298
AGCAGAUUUAAUCAUGAAGAGAUGUACUAUCU	chr1:173835351-173835603(-)$1	252	120	152	13.1600
GAGCACCCCAGCCCUAGAGUGAGGGAGGAGGG	chr16:1426158-1426406(-)$1	248	42	74	11.4009
CAGUUAACUAUAUCCGAAAAUGGGUAUCUUUA	chr5:40832664-40832937(-)$1	273	50	82	12.2295
ggcccggggggcgggcggcggugcccgucccg	chr4:53578777-53579004(+)$1	227	84	116	12.0543
CCGACCAGUGUUUGCCUUUUAUGGUAAUAACG	chr7:5569357-5569611(-)$1	254	152	184	10.2122
AGUCUUAUACUUAUCUGGCAGAUAGAUGAGAU	chr6:133136369-133136604(+)$1	235	170	202	9.5046
GGGUGGUCGGGGGUGUCUGUGUGGGCCGUGGG	chr14:105933354-105933611(+)$1	257	107	139	10.6015
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGG	chr12:6619516-6619761(+)$1	245	53	85	10.5437
CCCGCGGGGCUGGUGAAUCUGCACUUUUCGGU	chr19:2270123-2270370(+)$1	247	146	178	10.9985
gcuuucuggcguugcuuggcugcaacugccgu	chr17:19091317-19091541(+)$1	224	129	161	13.5198
UCUACACUUGACCUGAGCUCAGAAAAAAGAAA	chrX:20154138-20154359(-)$1	221	155	187	9.8640
gcuaugaugauggauuccaaaaccauucguag	chr11:122929521-122929760(-)$1	239	59	91	9.4508
UUUCUUCACUUUGACCAGAUGUCUACUGAAGA	chr19:3982413-3982654(-)$1	241	102	134	12.1252
UGUUUCUUUAAAAGAACUCUAUCUGAAGAAAU	chr10:70514825-70515097(+)$1	272	58	90	15.7694
UGGGCUAUUAUAAUUAAAAUAUAAGCUAUGAU	chrX:135961286-135961534(-)$1	248	80	112	11.1504
guguguuuguguguguguguauaugCUUGUCA	chr7:98479313-98479529(+)$1	216	54	86	11.1025
aaagacccugucuccaaauaaggucacguggu	chr7:1492783-1493046(-)$1	263	189	221	13.1445
AAGUUUGUUAGGGUUAAUUAGAACAAUCGGAU	chr2:203157698-203157926(+)$1	228	176	208	13.3944
ccacgaggaagagagguagcguuuucuccuga	chr17:19091288-19091510(+)$1	222	115	147	11.0826
AGCGAGGUACUAGGACUGCAAUUCUGCUGUAC	chr9:136216142-136216394(+)$1	252	9	41	14.5163

#DB
((((..(((..(((((.....)))))..))).	chr20:26189972-26190251(-)$1	1	83	115	10.5174
.(((....(((((((......)))))))...)	chr16:2819213-2819466(+)$1	1	62	94	14.3839
(.(((((.(...((((....))))...).)))	chr19:1408179-1408466(+)$1	1	151	183	10.1720
..((((((((((.((......)))))))))))	chr16:70563327-70563592(+)$1	1	68	100	15.0322
....((..(((((((......)))))))..))	chr9:100777604-100777861(+)$1	1	16	48	13.4890
((...(((.((((((......))))))...))	chr17:19015807-19016027(-)$1	1	162	194	13.6044
.((((.(((((.(((......)))..))))).	chr2:203155962-203156248(+)$1	1	181	213	11.8495
(((((((((....((.....))..))))))))	chr17:80054937-80055240(-)$1	1	143	175	10.4883
..(.(.((((((((((((...)))))))))))	chr7:5569700-5569980(-)$1	1	36	68	12.8210
(((((((((((.(((...)))...))))))))	chr11:75111337-75111658(+)$1	1	57	89	12.2231
(..(((....(((((......)))))....))	chr22:22899783-22900056(-)$1	1	50	82	14.4565
((((..(((...(((((....)))))....))	chr7:98479329-98479536(+)$1	1	38	70	11.1025
.((.(((((...(((......)))...)))))	chr11:62622002-62622223(-)$1	1	52	84	14.1024
(((((((((((((((......)))))))))).	chr10:101996745-101996999(-)$1	1	112	144	15.7447
(((..(.((((((((......))))).)))).	chr17:19093316-19093583(-)$1	1	143	175	13.5198
((((((((((((((((....)))))))))...	chr5:137896649-137896870(-)$1	1	173	205	11.1838
....((..(((((((......)))))))..))	chr9:100777578-100777803(+)$1	1	42	74	13.4890
(..(((..(((((((......))))))).)))	chr21:44479552-44479784(-)$1	1	114	146	14.4734
(...((((.((((((......)))))).))))	chr9:139621124-139621367(-)$1	1	50	82	12.0603
((.(((..(((.(((......))).)))..))	chr17:80051553-80051788(-)$1	1	67	99	14.2682
.(((((..(((.(((...))).))).))))).	chr20:2637165-2637383(+)$1	1	158	190	9.6536
((((((((((.(((.......))).)))))))	chr17:18965262-18965550(+)$1	1	153	185	9.8387
(..(.(((.....((((...))))...))).)	chr11:65210937-65211206(+)$1	1	216	248	10.1624
(((((((((((((((......)))).))))))	chr3:128211693-128211976(+)$1	1	223	255	10.9378
.((((((((.(((((......)))))))))..	chr17:19091313-19091517(+)$1	1	90	122	11.0826
.(..(((((..((((......))))..)))))	chr7:1488497-1488788(-)$1	1	189	221	12.1067
((((((((((.((((.....)))))))))..)	chr13:92001189-92001430(+)$1	1	91	123	9.4297
(.(((((((((.(((......))).)).))))	chr19:893461-893690(+)$1	1	176	208	13.6475
(((..(.((((((((......))))).)))).	chr17:19091310-19091513(+)$1	1	136	168	13.5198
(...(((..((((((......))))))..)))	chr19:2271416-2271649(+)$1	1	143	175	13.3308
(((((((..((((((......))))))...))	chr2:97559874-97560144(-)$1	1	115	147	14.0298
(((((((.....(((......)))....))))	chr1:173835351-173835603(-)$1	1	120	152	13.1600
.....((((..((((......))))..).)))	chr16:1426158-1426406(-)$1	1	42	74	11.4009
(..((((..((((((......))))))..)))	chr5:40832664-40832937(-)$1	1	50	82	12.2295
(((((..((((((((((....)))))))))).	chr4:53578777-53579004(+)$1	1	84	116	12.0543
)))))).(((((((((......))))..))))	chr7:5569357-5569611(-)$1	1	152	184	10.2122
.(((((((.((.((((...)))))))))))))	chr6:133136369-133136604(+)$1	1	170	202	9.5046
)))..(((.(.(((.(......).))).).))	chr14:105933354-105933611(+)$1	1	107	139	10.6015
(((((((((((.((.....)).))))))))))	chr12:6619516-6619761(+)$1	1	53	85	10.5437
))).(((((((((((......)))....))))	chr19:2270123-2270370(+)$1	1	146	178	10.9985
(((..(.((((((((......))))).)))).	chr17:19091317-19091541(+)$1	1	129	161	13.5198
(((...(((...(((....)))....)))..)	chrX:20154138-20154359(-)$1	1	155	187	9.8640
(((((((..((((.........))))))))))	chr11:122929521-122929760(-)$1	1	59	91	9.4508
)(((((((....(((.....)))...))))))	chr19:3982413-3982654(-)$1	1	102	134	12.1252
(((((((((...(((......)))))))))))	chr10:70514825-70515097(+)$1	1	58	90	15.7694
)))))(((((((.(((.....)))..))))))	chrX:135961286-135961534(-)$1	1	80	112	11.1504
((((..(((...(((((....)))))....))	chr7:98479313-98479529(+)$1	1	54	86	11.1025
....(((.(((..((......))..))).)))	chr7:1492783-1493046(-)$1	1	189	221	13.1445
..(((((.....(((......)))...)))))	chr2:203157698-203157926(+)$1	1	176	208	13.3944
.((((((((.(((((......)))))))))..	chr17:19091288-19091510(+)$1	1	115	147	11.0826
.((((((((((((((......)))))..))))	chr9:136216142-136216394(+)$1	1	9	41	14.5163

#PSSM
d : 0.15	g : 0.13	f : 0.09	= : 0.09	! : 0.07	# : 0.07	: : 0.07	b : 0.05	i : 0.05	e : 0.05	[ : 0.03	c : 0.01	) : 0.01	$ : 0.01	
d : 0.17	g : 0.17	! : 0.11	= : 0.09	f : 0.07	i : 0.07	# : 0.05	[ : 0.03	" : 0.03	e : 0.03	c : 0.01	b : 0.01	a : 0.01	) : 0.01	$ : 0.01	
g : 0.19	d : 0.15	= : 0.11	e : 0.09	! : 0.09	i : 0.07	# : 0.05	" : 0.05	f : 0.03	c : 0.01	a : 0.01	b : 0.01	[ : 0.01	) : 0.01	
g : 0.19	= : 0.11	d : 0.09	e : 0.09	c : 0.07	" : 0.07	i : 0.07	! : 0.07	# : 0.05	[ : 0.03	: : 0.03	a : 0.01	) : 0.01	
g : 0.19	e : 0.13	! : 0.11	d : 0.09	c : 0.09	= : 0.07	i : 0.07	b : 0.03	" : 0.03	# : 0.01	a : 0.01	[ : 0.01	) : 0.01	: : 0.01	h : 0.01	
c : 0.17	g : 0.15	e : 0.13	= : 0.09	! : 0.07	d : 0.07	i : 0.05	a : 0.05	b : 0.03	[ : 0.03	# : 0.01	f : 0.01	h : 0.01	" : 0.01	
c : 0.19	e : 0.13	g : 0.13	= : 0.11	! : 0.11	d : 0.07	i : 0.05	[ : 0.05	# : 0.03	f : 0.01	: : 0.01	h : 0.01	
c : 0.21	! : 0.17	= : 0.13	e : 0.09	i : 0.07	g : 0.07	d : 0.05	# : 0.03	[ : 0.03	$ : 0.03	f : 0.01	h : 0.01	
c : 0.19	= : 0.13	g : 0.11	e : 0.09	[ : 0.07	i : 0.07	! : 0.07	$ : 0.05	a : 0.03	# : 0.03	d : 0.03	f : 0.01	h : 0.01	
= : 0.13	" : 0.11	f : 0.11	c : 0.11	g : 0.09	! : 0.05	e : 0.05	# : 0.05	$ : 0.05	i : 0.03	[ : 0.03	b : 0.03	a : 0.01	h : 0.01	d : 0.01	
e : 0.17	" : 0.11	= : 0.11	f : 0.11	g : 0.09	! : 0.05	c : 0.05	[ : 0.05	$ : 0.05	# : 0.03	b : 0.03	i : 0.01	h : 0.01	d : 0.01	
e : 0.17	[ : 0.13	" : 0.11	g : 0.09	f : 0.09	d : 0.09	= : 0.07	$ : 0.05	# : 0.03	c : 0.03	i : 0.01	h : 0.01	! : 0.01	
c : 0.27	e : 0.19	d : 0.15	f : 0.09	g : 0.07	= : 0.05	[ : 0.03	# : 0.01	i : 0.01	$ : 0.01	b : 0.01	! : 0.01	
c : 0.29	e : 0.19	d : 0.15	f : 0.09	g : 0.07	b : 0.07	= : 0.05	i : 0.01	r : 0.01	
c : 0.25	e : 0.19	d : 0.15	f : 0.09	g : 0.07	b : 0.05	= : 0.05	i : 0.01	p : 0.01	[ : 0.01	n : 0.01	r : 0.01	
o : 0.58	d : 0.07	n : 0.07	e : 0.05	= : 0.03	l : 0.03	i : 0.01	p : 0.01	a : 0.01	m : 0.01	r : 0.01	c : 0.01	
o : 0.62	n : 0.11	m : 0.05	l : 0.05	= : 0.03	e : 0.03	p : 0.01	d : 0.01	r : 0.01	
o : 0.62	n : 0.11	m : 0.11	l : 0.07	= : 0.01	p : 0.01	r : 0.01	
o : 0.62	n : 0.11	m : 0.11	l : 0.05	c : 0.03	p : 0.01	r : 0.01	
o : 0.62	n : 0.09	m : 0.09	c : 0.05	l : 0.03	p : 0.01	d : 0.01	b : 0.01	r : 0.01	
o : 0.62	d : 0.07	c : 0.07	m : 0.05	n : 0.03	b : 0.03	l : 0.01	i : 0.01	p : 0.01	r : 0.01	
c : 0.23	e : 0.19	d : 0.13	f : 0.09	g : 0.07	b : 0.05	= : 0.05	] : 0.03	o : 0.03	3 : 0.01	i : 0.01	r : 0.01	
c : 0.23	e : 0.19	d : 0.17	f : 0.09	g : 0.07	= : 0.07	b : 0.03	2 : 0.01	3 : 0.01	i : 0.01	a : 0.01	4 : 0.01	
c : 0.21	e : 0.19	d : 0.15	= : 0.09	f : 0.09	g : 0.07	2 : 0.03	3 : 0.03	i : 0.01	b : 0.01	] : 0.01	4 : 0.01	
e : 0.21	= : 0.11	3 : 0.09	f : 0.09	d : 0.09	g : 0.07	2 : 0.05	i : 0.05	] : 0.05	4 : 0.05	c : 0.03	b : 0.01	
e : 0.21	= : 0.13	g : 0.09	3 : 0.09	f : 0.09	2 : 0.07	i : 0.05	c : 0.05	4 : 0.05	] : 0.03	d : 0.03	b : 0.01	
g : 0.15	= : 0.13	f : 0.11	2 : 0.09	4 : 0.09	3 : 0.07	c : 0.07	e : 0.05	i : 0.05	] : 0.05	d : 0.03	b : 0.01	
g : 0.15	= : 0.13	c : 0.13	e : 0.11	2 : 0.09	4 : 0.09	i : 0.05	] : 0.05	a : 0.03	3 : 0.03	d : 0.03	f : 0.01	
e : 0.15	= : 0.13	c : 0.11	2 : 0.09	g : 0.09	] : 0.07	i : 0.07	3 : 0.05	4 : 0.05	d : 0.05	f : 0.01	a : 0.01	h : 0.01	
c : 0.17	e : 0.15	= : 0.13	2 : 0.09	g : 0.09	3 : 0.07	d : 0.07	i : 0.05	4 : 0.05	f : 0.01	] : 0.01	h : 0.01	
c : 0.21	e : 0.15	= : 0.13	g : 0.11	3 : 0.07	i : 0.05	a : 0.05	b : 0.03	d : 0.03	2 : 0.03	] : 0.01	f : 0.01	h : 0.01	
c : 0.21	e : 0.11	g : 0.11	= : 0.09	i : 0.07	3 : 0.07	2 : 0.07	] : 0.05	b : 0.03	d : 0.03	f : 0.03	a : 0.01	h : 0.01	

#score	622.5481591281062
#seq	51
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_UTR_m1_run2.txt

#BEAR
e!!ddddcccssssssssssccc]dddd22e	chr6:27094010-27094228(-)$1	218	7	38	14.1067
^^^^^^^^^^^^^^^^^^^^^^a22bb4444	chr3:196214164-196214498(-)$1	334	148	179	17.0783
iiiiiiiiitttttttttttiiiiiiiii::	chr6:99848025-99848293(-)$1	268	54	85	16.7597
ggggg^^^^^^^^^^^^^^^^^^^^gggggg	chr6:31729492-31729774(+)$1	282	238	269	18.3012
[gggggggxxxxxxxxxxxxxxxggggggg]	chr1:161183942-161184236(+)$1	294	40	71	18.6783
hhhhhh"""bbrrrrrrrrrbb333hhhhhh	chr4:174253120-174253330(-)$1	210	80	111	11.3179
f^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr1:165728659-165728921(-)$1	262	198	229	16.5583
==========rrrrrrrrr==========cc	chrX:102941466-102941720(-)$1	254	180	211	12.4616
eeeeexxxxxxxxxxxxxxxeeeeeffffff	chr5:77071906-77072206(-)$1	300	97	128	16.4618
c[gggggggtttttttttttggggggg]ccc	chr1:246349907-246350290(-)$1	383	70	101	18.1643
ffffyyyyyyyyyyyyyyyyffffff::ggg	chr2:29169490-29169768(+)$1	278	170	201	16.3678
!bb^^^^^^^^^^^^^^^^^^bb22eeeee]	chr12:76449748-76449967(-)$1	219	24	55	17.1205
eee[dddduuuuuuuuuuuudddd]eeeeee	chr2:170668204-170668463(+)$1	259	70	101	19.8232
iiiiiiiiyyyyyyyyyyyyyyyyiiiiiii	chr13:107211782-107212097(-)$1	315	19	50	20.8114
cc[ddddvvvvvvvvvvvvvdddd]ccc333	chr17:42283646-42283964(-)$1	318	76	107	19.4189
hhhhhh"""bbrrrrrrrrrbb333hhhhhh	chr4:174253025-174253320(-)$1	295	70	101	11.3179
gggg[cccuuuuuuuuuuuuccc22gggggg	chr10:22825603-22825877(-)$1	274	233	264	21.7257
e^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr7:111928853-111929108(+)$1	255	152	183	16.9069
gggg^^^^^^^^^^^^^^^^^^^^^^^gggg	chr14:78177078-78177327(+)$1	249	204	235	17.7603
dddd[addddssssssssssdddd]a]dddd	chr17:48827852-48828135(+)$1	283	0	31	13.1317
ffffffyyyyyyyyyyyyyyyyffffff:dd	chr1:150198838-150199203(-)$1	365	211	242	17.4691
##cccxxxxxxxxxxxxxxxccc22ffffff	chr11:129991472-129991771(+)$1	299	212	243	17.6440
=========ssssssssss============	chr22:21801967-21802221(+)$1	254	95	126	15.3029
eeee[bbwwwwwwwwwwwwwwbb]eeeee22	chr1:11083388-11083678(+)$1	290	147	178	19.4845
!!bb[dddd!!assssssssssa22dddd]b	chr4:76580851-76581155(-)$1	304	207	238	12.5693
gggggggvvvvvvvvvvvvvggggggg::::	chr11:32610123-32610390(+)$1	267	3	34	15.6775
ee"""eeeeesssssssssseeeeeeeeee8	chr3:156870712-156871053(-)$1	341	248	279	13.2276
ee[eeeeeuuuuuuuuuuuueeeee]eeeee	chr17:73664515-73664809(+)$1	294	227	258	19.7497
'ccc!!ccctttttttttttccc22ccc888	chr15:66791638-66791889(-)$1	251	61	92	17.3116
cc[a[ccc^^^^^^^^^^^^^^^^^^^^ccc	chr2:38976247-38976574(-)$1	327	229	260	16.9179
^^^^^^^^^^^^^^^^^^^dddd22ccc333	chr14:102550990-102551265(-)$1	275	99	130	16.1907
!!bbdddduuuuuuuuuuuudddd]bb333f	chr1:70694053-70694359(+)$1	306	146	177	19.8204
iiiiiiiiyyyyyyyyyyyyyyyyiiiiiii	chr15:40488685-40489029(+)$1	344	44	75	20.8114
gggggggvvvvvvvvvvvvvggggggg::dd	chr14:73572478-73572888(+)$1	410	74	105	17.2377
e!!ddddvvvvvvvvvvvvvdddd333eeee	chr2:47388761-47389098(-)$1	337	260	291	19.3366
"""eeeeerrrrrrrrreeeee333eeeee]	chrX:153995465-153995758(+)$1	293	110	141	11.8659
b!!eeeeexxxxxxxxxxxxxxxeeeee22b	chr15:69072327-69072582(-)$1	255	162	193	17.1823
[gggggggvvvvvvvvvvvvvggggggg333	chr11:110101146-110101465(-)$1	319	12	43	19.9421
hhhhhh"""bbrrrrrrrrrbb333hhhhhh	chr4:174253130-174253339(-)$1	209	89	120	11.3179
d^^^^^^^^^^^^^^^^^^^dddd333a]a]	chr12:56991212-56991487(-)$1	275	28	59	16.8923
====[cccssssssssssccc]=========	chr7:104681282-104681591(+)$1	309	257	288	15.1247
hhhhhh[auuuuuuuuuuuuahhhhhhhhEE	chr7:148514851-148515175(-)$1	324	208	239	16.3832
!ccc[ddddssssssssssdddd]ccc22ff	chr5:179151635-179151885(+)$1	250	152	183	14.2692
ccc[ddddtttttttttttdddd22ccc]==	chr13:111545074-111545411(-)$1	337	65	96	18.4212
hhhhhhhhxxxxxxxxxxxxxxxhhhhhhhh	chr10:70520836-70521050(+)$1	214	136	167	15.4906
dddd[bbwwwwwwwwwwwwwwbb]dddd]cc	chr19:46195043-46195294(-)$1	251	175	206	19.1725
e!!gggggggssssssssssgggggggeeee	chr9:19380088-19380327(-)$1	239	77	108	14.1181
[gggggggtttttttttttggggggg]a]cc	chr1:154148588-154148825(-)$1	237	134	165	18.1404
hhhhhhhhxxxxxxxxxxxxxxxhhhhhhhh	chr10:70520807-70521036(+)$1	229	165	196	15.4906
========zzzzzzzzzzzzzzzzz======	chr12:56991287-56991570(-)$1	283	196	227	15.7865
========vvvvvvvvvvvvv==========	chr1:24975313-24975568(+)$1	255	74	105	20.3029
[bbeeeeesssssssssseeeee333bb]ff	chr2:38975949-38976252(-)$1	303	104	135	13.5285
eeeee^^^^^^^^^^^^^^^^^^eeeee::e	chr14:21679463-21679691(-)$1	228	133	164	15.3132
ee!!dddduuuuuuuuuuuudddd22eeeee	chr11:110108154-110108476(-)$1	322	166	197	20.0037
"dddd!!bbtttttttttttbb22dddd]a2	chr4:2930080-2930394(+)$1	314	254	285	17.1233
eee^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr1:100174434-100174700(-)$1	266	147	178	17.0065
!ccc[ddddssssssssssdddd]ccc22ff	chr5:179151579-179151835(+)$1	256	208	239	14.2692
""bbyyyyyyyyyyyyyyyybb333bb]a]c	chr9:100777601-100777856(+)$1	255	95	126	19.7610

#otherMatches

#Seq PSSM
CAGCAGGCGCAUCUACACUAGUGACCUGAGG	chr6:27094010-27094228(-)$1	218	7	38	14.1067
CAGGCAGAAAAAAGGCGAAGAGCGAUGGAAG	chr3:196214164-196214498(-)$1	334	148	179	17.0783
aauuuaaaauacauuuuuauuuuuaaauuuu	chr6:99848025-99848293(-)$1	268	54	85	16.7597
AGGUGAUGAGAUCCAAAUGUGCAACCACCUC	chr6:31729492-31729774(+)$1	282	238	269	18.3012
AGCAGGGGAGCAGCGUUUGAUCCCCCCUGCC	chr1:161183942-161184236(+)$1	294	40	71	18.6783
aggaugaagaugaagaaUAAAUGGCUAUCCU	chr4:174253120-174253330(-)$1	210	80	111	11.3179
Cuuaaaaaaauuaauucuuagauaaugaaaa	chr1:165728659-165728921(-)$1	262	198	229	16.5583
GGAGAAAGGGUCGAUGAUUUCCUUUUUUCGU	chrX:102941466-102941720(-)$1	254	180	211	12.4616
CCCUCCUUCUCGCGGCGCUCGAGGGACCAUG	chr5:77071906-77072206(-)$1	300	97	128	16.4618
GACCUCUUGCAUAAUGACUCUAAGGGGCUUC	chr1:246349907-246350290(-)$1	383	70	101	18.1643
CCGGUCAAACUAUAUAAACUCUGGCUCACCU	chr2:29169490-29169768(+)$1	278	170	201	16.3678
AGGAGGAAUUGAAAGAAAAGGCCAAGAUUGA	chr12:76449748-76449967(-)$1	219	24	55	17.1205
ACCAAUUUUUUAUUCAUUUUAAAUAGGUUUU	chr2:170668204-170668463(+)$1	259	70	101	19.8232
UAAAACUAGUUUUGUUUAAAUUUAUAGUUUU	chr13:107211782-107212097(-)$1	315	19	50	20.8114
UGGUCUUGAUGUAUGUGGAAGAGAGUAUGUG	chr17:42283646-42283964(-)$1	318	76	107	19.4189
aggaugaagaugaagaaUAAAUGGCUAUCCU	chr4:174253025-174253320(-)$1	295	70	101	11.3179
uGGAGUUGAAAGAUGUGAGACAGUAUUCAGA	chr10:22825603-22825877(-)$1	274	233	264	21.7257
uaaaaaaaaaaaaaaaaaaaaaaaaaaaaga	chr7:111928853-111929108(+)$1	255	152	183	16.9069
ggguacaaaaaaaauagaaugaauaagaccu	chr14:78177078-78177327(+)$1	249	204	235	17.7603
UUAUGGCAGAAAAGAGGGGAUCUGAUGAUAA	chr17:48827852-48828135(+)$1	283	0	31	13.1317
GAGAGGGAGAAGAGGAAGUGGGCCUCUCAUA	chr1:150198838-150199203(-)$1	365	211	242	17.4691
agaCUAUGAUGUUUAUAAAAGGUAACUCUUC	chr11:129991472-129991771(+)$1	299	212	243	17.6440
gugcgugcguguguguguguguaugugcgua	chr22:21801967-21802221(+)$1	254	95	126	15.3029
UAUGAGCGAGAAAAGGAGAGAGCGCGUGCAG	chr1:11083388-11083678(+)$1	290	147	178	19.4845
AGCAUACUAUUUGCAAGGUUAAAUUUGGUCU	chr4:76580851-76581155(-)$1	304	207	238	12.5693
CAUACUUGUGUAGAUGUUGAAAGUGUGAUGA	chr11:32610123-32610390(+)$1	267	3	34	15.6775
AAUUGGGUUCGUAAGUAUUAGGACUUUUCUA	chr3:156870712-156871053(-)$1	341	248	279	13.2276
CAAUUUCAUUUGUCAGAUUUUGGAACUGUGC	chr17:73664515-73664809(+)$1	294	227	258	19.7497
GCAGCAGCUACCAAGAAACCAGCCCCUGAAA	chr15:66791638-66791889(-)$1	251	61	92	17.3116
CUACACCUAGCUUCACCUUAUUCUUUAAAGG	chr2:38976247-38976574(-)$1	327	229	260	16.9179
agaagauuaaggaaaagUACAUCGAUCAAGA	chr14:102550990-102551265(-)$1	275	99	130	16.1907
UCGUUGACAGAGCUUUGAUAGUCGUACCAUA	chr1:70694053-70694359(+)$1	306	146	177	19.8204
AAUUUUGCUUCUUUAGGACACCAUGUAAAAU	chr15:40488685-40489029(+)$1	344	44	75	20.8114
UUUGUUUACAUUAGAGAAAAAAGCAGAGAUC	chr14:73572478-73572888(+)$1	410	74	105	17.2377
CAUUCUUCACUUUGAUUUUUAAGAUAAGAGG	chr2:47388761-47389098(-)$1	337	260	291	19.3366
AUUGCUGCAGUAAAGAGGCAGCUCCGAGUGA	chrX:153995465-153995758(+)$1	293	110	141	11.8659
AGUGGAAUAACCUAUUUUGAAAAAUUCCUAU	chr15:69072327-69072582(-)$1	255	162	193	17.1823
UCGAGUCAAACUGUGGGAUUCUGAUUUGUAU	chr11:110101146-110101465(-)$1	319	12	43	19.9421
aggaugaagaugaagaaUAAAUGGCUAUCCU	chr4:174253130-174253339(-)$1	209	89	120	11.3179
Cugugugugugugugugugugugugugugug	chr12:56991212-56991487(-)$1	275	28	59	16.8923
AAGUAUAAGUGGAAAAUAUUAAAUUUCUUCU	chr7:104681282-104681591(+)$1	309	257	288	15.1247
UAAGACACGUCUAAUAACUGGGUUUUACUGU	chr7:148514851-148515175(-)$1	324	208	239	16.3832
AGAAACAGAGUCCAGAAAAUCUGCUUUAAGC	chr5:179151635-179151885(+)$1	250	152	183	14.2692
ACACUUAUUUUUCCUUUCUGUAAUAUGUUUU	chr13:111545074-111545411(-)$1	337	65	96	18.4212
ACUCUAUGGUAUUAAUAUUCAUGUAUAGGGU	chr10:70520836-70521050(+)$1	214	136	167	15.4906
CGGGAAUGAGGUUGAGGGUGGAUAUUUGACC	chr19:46195043-46195294(-)$1	251	175	206	19.1725
UAAGCGGAAGUUGGCCCUCUUUUCCGUGGCG	chr9:19380088-19380327(-)$1	239	77	108	14.1181
AUCCAGCUGGUUGAAGAAGAGCUGGACCGUG	chr1:154148588-154148825(-)$1	237	134	165	18.1404
ACUCUAUGGUAUUAAUAUUCAUGUAUAGGGU	chr10:70520807-70521036(+)$1	229	165	196	15.4906
gcgcgcgcugugugugugugugugugugcgu	chr12:56991287-56991570(-)$1	283	196	227	15.7865
AUUUUUGAAUGGAAAAAAUGCUCGAGAAUUU	chr1:24975313-24975568(+)$1	255	74	105	20.3029
CGUUAGAUUGAAGAAAACAUCUAGAUGCAGC	chr2:38975949-38976252(-)$1	303	104	135	13.5285
ACCACGGGAAAGGAAAGAAAAAGGUGGUGGA	chr14:21679463-21679691(-)$1	228	133	164	15.3132
AGAACGACUUGAAAAGGAGCGUCGAGCUGCU	chr11:110108154-110108476(-)$1	322	166	197	20.0037
AUGGAAUGCAAAAAAGCCAAGCCCUCCGCCU	chr4:2930080-2930394(+)$1	314	254	285	17.1233
AGUGAUAAUUAUCAUCAAACCAAAGAAACUU	chr1:100174434-100174700(-)$1	266	147	178	17.0065
AGAAACAGAGUCCAGAAAAUCUGCUUUAAGC	chr5:179151579-179151835(+)$1	256	208	239	14.2692
aaggagaagaugauuaagaCCCCAGAUGACC	chr9:100777601-100777856(+)$1	255	95	126	19.7610

#DB
(..(((((((..........))).))))..)	chr6:27094010-27094228(-)$1	1	7	38	14.1067
......................)..))....	chr3:196214164-196214498(-)$1	1	148	179	17.0783
(((((((((...........)))))))))..	chr6:99848025-99848293(-)$1	1	54	85	16.7597
(((((....................))))))	chr6:31729492-31729774(+)$1	1	238	269	18.3012
.(((((((...............))))))).	chr1:161183942-161184236(+)$1	1	40	71	18.6783
((((((...((.........))...))))))	chr4:174253120-174253330(-)$1	1	80	111	11.3179
(.........................)))))	chr1:165728659-165728921(-)$1	1	198	229	16.5583
((((((((((.........))))))))))((	chrX:102941466-102941720(-)$1	1	180	211	12.4616
(((((...............)))))((((((	chr5:77071906-77072206(-)$1	1	97	128	16.4618
(.(((((((...........))))))).)))	chr1:246349907-246350290(-)$1	1	70	101	18.1643
((((................))))))..(((	chr2:29169490-29169768(+)$1	1	170	201	16.3678
.((..................))..))))).	chr12:76449748-76449967(-)$1	1	24	55	17.1205
(((.((((............)))).))))))	chr2:170668204-170668463(+)$1	1	70	101	19.8232
((((((((................)))))))	chr13:107211782-107212097(-)$1	1	19	50	20.8114
((.((((.............)))).)))...	chr17:42283646-42283964(-)$1	1	76	107	19.4189
((((((...((.........))...))))))	chr4:174253025-174253320(-)$1	1	70	101	11.3179
((((.(((............)))..))))))	chr10:22825603-22825877(-)$1	1	233	264	21.7257
(..........................))))	chr7:111928853-111929108(+)$1	1	152	183	16.9069
((((.......................))))	chr14:78177078-78177327(+)$1	1	204	235	17.7603
((((.(((((..........)))).).))))	chr17:48827852-48828135(+)$1	1	0	31	13.1317
((((((................)))))).((	chr1:150198838-150199203(-)$1	1	211	242	17.4691
..(((...............)))..))))))	chr11:129991472-129991771(+)$1	1	212	243	17.6440
(((((((((..........))))))))))))	chr22:21801967-21802221(+)$1	1	95	126	15.3029
((((.((..............)).)))))..	chr1:11083388-11083678(+)$1	1	147	178	19.4845
..((.((((..(..........)..)))).)	chr4:76580851-76581155(-)$1	1	207	238	12.5693
(((((((.............)))))))....	chr11:32610123-32610390(+)$1	1	3	34	15.6775
((...(((((..........)))))))))).	chr3:156870712-156871053(-)$1	1	248	279	13.2276
((.(((((............))))).)))))	chr17:73664515-73664809(+)$1	1	227	258	19.7497
.(((..(((...........)))..)))...	chr15:66791638-66791889(-)$1	1	61	92	17.3116
((.(.(((....................)))	chr2:38976247-38976574(-)$1	1	229	260	16.9179
...................))))..)))...	chr14:102550990-102551265(-)$1	1	99	130	16.1907
..((((((............)))).))...)	chr1:70694053-70694359(+)$1	1	146	177	19.8204
((((((((................)))))))	chr15:40488685-40489029(+)$1	1	44	75	20.8114
(((((((.............)))))))..((	chr14:73572478-73572888(+)$1	1	74	105	17.2377
(..((((.............))))...))))	chr2:47388761-47389098(-)$1	1	260	291	19.3366
...(((((.........)))))...))))).	chrX:153995465-153995758(+)$1	1	110	141	11.8659
(..(((((...............)))))..)	chr15:69072327-69072582(-)$1	1	162	193	17.1823
.(((((((.............)))))))...	chr11:110101146-110101465(-)$1	1	12	43	19.9421
((((((...((.........))...))))))	chr4:174253130-174253339(-)$1	1	89	120	11.3179
(...................))))...).).	chr12:56991212-56991487(-)$1	1	28	59	16.8923
((((.(((..........))).)))))))))	chr7:104681282-104681591(+)$1	1	257	288	15.1247
((((((.(............)))))))))))	chr7:148514851-148515175(-)$1	1	208	239	16.3832
.(((.((((..........)))).)))..))	chr5:179151635-179151885(+)$1	1	152	183	14.2692
(((.((((...........))))..))).))	chr13:111545074-111545411(-)$1	1	65	96	18.4212
((((((((...............))))))))	chr10:70520836-70521050(+)$1	1	136	167	15.4906
((((.((..............)).)))).))	chr19:46195043-46195294(-)$1	1	175	206	19.1725
(..(((((((..........)))))))))))	chr9:19380088-19380327(-)$1	1	77	108	14.1181
.(((((((...........))))))).).))	chr1:154148588-154148825(-)$1	1	134	165	18.1404
((((((((...............))))))))	chr10:70520807-70521036(+)$1	1	165	196	15.4906
((((((((.................))))))	chr12:56991287-56991570(-)$1	1	196	227	15.7865
((((((((.............))))))))))	chr1:24975313-24975568(+)$1	1	74	105	20.3029
.(((((((..........)))))...)).))	chr2:38975949-38976252(-)$1	1	104	135	13.5285
(((((..................)))))..(	chr14:21679463-21679691(-)$1	1	133	164	15.3132
((..((((............))))..)))))	chr11:110108154-110108476(-)$1	1	166	197	20.0037
.((((..((...........))..)))).).	chr4:2930080-2930394(+)$1	1	254	285	17.1233
(((........................))))	chr1:100174434-100174700(-)$1	1	147	178	17.0065
.(((.((((..........)))).)))..))	chr5:179151579-179151835(+)$1	1	208	239	14.2692
..((................))...)).).)	chr9:100777601-100777856(+)$1	1	95	126	19.7610

#PSSM
e : 0.20	h : 0.10	g : 0.08	= : 0.08	! : 0.08	[ : 0.06	c : 0.06	i : 0.05	f : 0.05	d : 0.05	" : 0.05	^ : 0.03	# : 0.01	' : 0.01	b : 0.01	
g : 0.13	e : 0.13	! : 0.10	h : 0.10	c : 0.10	^ : 0.08	= : 0.08	i : 0.05	d : 0.05	f : 0.03	b : 0.03	" : 0.03	[ : 0.01	# : 0.01	
g : 0.15	h : 0.10	! : 0.08	^ : 0.08	= : 0.08	e : 0.08	b : 0.08	c : 0.08	i : 0.05	[ : 0.05	d : 0.05	f : 0.03	" : 0.03	
g : 0.17	^ : 0.12	e : 0.12	d : 0.10	h : 0.10	= : 0.08	c : 0.06	i : 0.05	b : 0.05	f : 0.03	[ : 0.03	" : 0.01	a : 0.01	! : 0.01	
[ : 0.15	d : 0.13	^ : 0.13	g : 0.13	h : 0.10	e : 0.10	= : 0.06	i : 0.05	y : 0.03	f : 0.01	c : 0.01	" : 0.01	! : 0.01	
d : 0.17	^ : 0.17	g : 0.12	h : 0.10	e : 0.08	= : 0.06	i : 0.05	c : 0.05	x : 0.03	y : 0.03	b : 0.03	! : 0.03	a : 0.01	f : 0.01	
d : 0.18	^ : 0.17	g : 0.12	e : 0.08	= : 0.06	c : 0.06	i : 0.05	" : 0.05	y : 0.05	x : 0.03	b : 0.03	h : 0.03	[ : 0.01	! : 0.01	
^ : 0.17	d : 0.13	c : 0.08	g : 0.08	e : 0.08	= : 0.06	v : 0.06	i : 0.05	" : 0.05	y : 0.05	x : 0.03	w : 0.03	h : 0.03	a : 0.01	b : 0.01	
^ : 0.18	x : 0.10	u : 0.10	v : 0.10	y : 0.08	d : 0.06	" : 0.05	c : 0.03	= : 0.03	g : 0.03	w : 0.03	s : 0.03	t : 0.03	i : 0.01	e : 0.01	r : 0.01	z : 0.01	b : 0.01	
^ : 0.18	t : 0.10	x : 0.10	u : 0.10	v : 0.10	y : 0.08	s : 0.08	b : 0.05	w : 0.03	c : 0.01	= : 0.01	d : 0.01	! : 0.01	e : 0.01	r : 0.01	g : 0.01	z : 0.01	
^ : 0.18	s : 0.15	t : 0.10	x : 0.10	u : 0.10	v : 0.10	y : 0.08	b : 0.05	r : 0.03	w : 0.03	! : 0.01	z : 0.01	
^ : 0.18	s : 0.15	t : 0.10	x : 0.10	u : 0.10	v : 0.10	r : 0.08	y : 0.08	w : 0.03	a : 0.01	z : 0.01	
^ : 0.18	s : 0.17	t : 0.10	x : 0.10	u : 0.10	v : 0.10	r : 0.08	y : 0.08	w : 0.03	z : 0.01	
^ : 0.18	s : 0.17	t : 0.10	x : 0.10	u : 0.10	v : 0.10	r : 0.08	y : 0.08	w : 0.03	z : 0.01	
^ : 0.18	s : 0.17	t : 0.10	x : 0.10	u : 0.10	v : 0.10	r : 0.08	y : 0.08	w : 0.03	z : 0.01	
^ : 0.18	s : 0.17	t : 0.10	x : 0.10	u : 0.10	v : 0.10	r : 0.08	y : 0.08	w : 0.03	z : 0.01	
^ : 0.18	s : 0.17	t : 0.10	x : 0.10	u : 0.10	v : 0.10	r : 0.08	y : 0.08	w : 0.03	z : 0.01	
^ : 0.18	s : 0.17	t : 0.10	x : 0.10	u : 0.10	v : 0.10	y : 0.08	r : 0.06	w : 0.03	e : 0.01	z : 0.01	
^ : 0.18	s : 0.13	t : 0.10	x : 0.10	u : 0.10	v : 0.10	y : 0.08	r : 0.06	w : 0.03	e : 0.03	c : 0.01	z : 0.01	
^ : 0.17	x : 0.10	u : 0.10	v : 0.10	s : 0.08	y : 0.08	t : 0.06	d : 0.06	r : 0.05	= : 0.03	w : 0.03	e : 0.03	c : 0.01	g : 0.01	z : 0.01	
d : 0.18	^ : 0.15	c : 0.08	b : 0.08	e : 0.08	g : 0.08	x : 0.06	y : 0.05	= : 0.03	w : 0.03	v : 0.03	i : 0.01	f : 0.01	s : 0.01	a : 0.01	z : 0.01	
d : 0.18	^ : 0.13	b : 0.13	g : 0.10	e : 0.08	c : 0.06	x : 0.06	= : 0.05	y : 0.05	i : 0.01	f : 0.01	s : 0.01	] : 0.01	h : 0.01	z : 0.01	
d : 0.18	^ : 0.12	g : 0.10	3 : 0.08	c : 0.06	x : 0.06	= : 0.06	e : 0.06	b : 0.05	a : 0.03	f : 0.03	y : 0.03	i : 0.01	h : 0.01	z : 0.01	2 : 0.01	
2 : 0.15	g : 0.12	d : 0.12	^ : 0.10	3 : 0.10	] : 0.08	e : 0.08	= : 0.06	h : 0.05	f : 0.03	y : 0.03	i : 0.01	z : 0.01	
2 : 0.15	3 : 0.13	g : 0.12	^ : 0.10	e : 0.10	= : 0.06	] : 0.06	d : 0.05	i : 0.05	h : 0.05	f : 0.03	c : 0.03	z : 0.01	
g : 0.15	e : 0.12	h : 0.10	c : 0.10	^ : 0.08	= : 0.08	d : 0.06	f : 0.06	b : 0.05	i : 0.05	3 : 0.05	a : 0.01	] : 0.01	2 : 0.01	
e : 0.15	g : 0.13	h : 0.10	c : 0.10	= : 0.08	d : 0.06	b : 0.06	f : 0.06	^ : 0.06	i : 0.05	] : 0.03	3 : 0.03	: : 0.01	
e : 0.22	h : 0.10	d : 0.08	g : 0.08	= : 0.08	f : 0.06	c : 0.06	i : 0.05	: : 0.05	] : 0.03	a : 0.03	2 : 0.03	4 : 0.01	^ : 0.01	3 : 0.01	b : 0.01	
e : 0.18	h : 0.10	] : 0.10	g : 0.08	= : 0.08	2 : 0.06	3 : 0.06	: : 0.06	i : 0.05	f : 0.05	c : 0.03	d : 0.03	4 : 0.01	8 : 0.01	a : 0.01	
e : 0.17	f : 0.10	g : 0.08	h : 0.08	c : 0.08	= : 0.08	3 : 0.06	2 : 0.05	: : 0.05	d : 0.05	i : 0.03	] : 0.03	a : 0.03	4 : 0.01	8 : 0.01	E : 0.01	
e : 0.15	f : 0.12	c : 0.10	h : 0.08	= : 0.08	g : 0.06	] : 0.06	3 : 0.05	d : 0.05	: : 0.03	i : 0.03	2 : 0.03	b : 0.03	8 : 0.03	4 : 0.01	E : 0.01	

#score	969.9323363346638
#seq	58
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_CDS_m2_run1.txt

#BEAR
gggggggwwwwwwwwwwwwwwggggggg	chr8:95403850-95404112(-)$1	262	216	244	21.5995
hhhhhhhvvvvvvvvvvvvvhhhhhhhh	chr17:16347304-16347560(+)$1	256	20	48	21.0127
iiiiiiivvvvvvvvvvvvviiiiiiii	chr2:27665137-27665391(+)$1	254	94	122	22.0641
c[eeeeeuuuuuuuuuuuueeeee]ccc	chr11:93463198-93463471(-)$1	273	170	198	18.7240
eeeee[avvvvvvvvvvvvva]eeeee:	chr18:33605343-33605664(-)$1	321	29	57	19.4484
gggggg!!bbrrrrrrrrrbb22ggggg	chr10:133769112-133769394(+)$1	282	175	203	15.0906
hhhhhhh[bb^^^^^^^^^^^^^^^^^^	chr15:64430114-64430385(+)$1	271	62	90	12.7314
##bbxxxxxxxxxxxxxxxbb4444ggg	chr12:9220167-9220403(-)$1	236	157	185	14.6664
""a[bb[ddddrrrrrrrrrddddbba2	chr7:32910215-32910532(-)$1	317	203	231	11.5010
hhhhhhh[cccrrrrrrrrrccc]hhhh	chr12:76443176-76443421(-)$1	245	145	173	14.3011
gggggggrrrrrrrrrgggggggggggg	chr2:153576286-153576552(+)$1	266	45	73	12.9142
cc!!ccctttttttttttccc22ccc]g	chr17:26988771-26989098(-)$1	327	127	155	18.1871

#otherMatches

#Seq PSSM
UGUAUAGGAGCUCUUAAAAAACUGUGCA	chr8:95403850-95404112(-)$1	262	216	244	21.5995
UACCUGCUCCCCACAGCGCUGUAGGUAG	chr17:16347304-16347560(+)$1	256	20	48	21.0127
ggggccgggCCCAGGUACAGCGGCCCUG	chr2:27665137-27665391(+)$1	254	94	122	22.0641
UUUGCCCUUGCUCUGUUUUGGGCAUAAG	chr11:93463198-93463471(-)$1	273	170	198	18.7240
GACAUGGGCGUAUCUUCUAACGAUGUCG	chr18:33605343-33605664(-)$1	321	29	57	19.4484
CGCGCCAGCCUCAAACCCCGGAAGGUGU	chr10:133769112-133769394(+)$1	282	175	203	15.0906
GUUAUGUAAUAAAAUAUUUUAAAAUCAG	chr15:64430114-64430385(+)$1	271	62	90	12.7314
AUAGAAUACCAAGAUUAAACUUAAAGGA	chr12:9220167-9220403(-)$1	236	157	185	14.6664
ACGCGUUCAUGCAGCUGUCACAUGACCU	chr7:32910215-32910532(-)$1	317	203	231	11.5010
CUGCAGUAAACUUUUCCAACGUUGGCUG	chr12:76443176-76443421(-)$1	245	145	173	14.3011
UGAAGUGUUAUUUUUGUACUUCAUUAAA	chr2:153576286-153576552(+)$1	266	45	73	12.9142
GGUUUCGCCAUUAGCUUCCGGUUCCGGG	chr17:26988771-26989098(-)$1	327	127	155	18.1871

#DB
(((((((..............)))))))	chr8:95403850-95404112(-)$1	1	216	244	21.5995
(((((((.............))))))))	chr17:16347304-16347560(+)$1	1	20	48	21.0127
(((((((.............))))))))	chr2:27665137-27665391(+)$1	1	94	122	22.0641
(.(((((............))))).)))	chr11:93463198-93463471(-)$1	1	170	198	18.7240
(((((.(.............).))))).	chr18:33605343-33605664(-)$1	1	29	57	19.4484
((((((..((.........))..)))))	chr10:133769112-133769394(+)$1	1	175	203	15.0906
(((((((.((..................	chr15:64430114-64430385(+)$1	1	62	90	12.7314
..((...............))....)))	chr12:9220167-9220403(-)$1	1	157	185	14.6664
..(.((.((((.........))))))).	chr7:32910215-32910532(-)$1	1	203	231	11.5010
(((((((.(((.........))).))))	chr12:76443176-76443421(-)$1	1	145	173	14.3011
(((((((.........)))))))(((((	chr2:153576286-153576552(+)$1	1	45	73	12.9142
((..(((...........)))..))).)	chr17:26988771-26989098(-)$1	1	127	155	18.1871

#PSSM
g : 0.25	h : 0.25	c : 0.16	i : 0.08	e : 0.08	# : 0.08	" : 0.08	
g : 0.25	h : 0.25	i : 0.08	[ : 0.08	e : 0.08	# : 0.08	" : 0.08	c : 0.08	
g : 0.25	h : 0.25	e : 0.16	i : 0.08	b : 0.08	a : 0.08	! : 0.08	
g : 0.25	h : 0.25	e : 0.16	i : 0.08	b : 0.08	[ : 0.08	! : 0.08	
g : 0.25	h : 0.25	e : 0.16	i : 0.08	x : 0.08	b : 0.08	c : 0.08	
g : 0.25	h : 0.25	i : 0.08	e : 0.08	[ : 0.08	x : 0.08	b : 0.08	c : 0.08	
h : 0.25	g : 0.16	i : 0.08	e : 0.08	a : 0.08	! : 0.08	x : 0.08	[ : 0.08	c : 0.08	
v : 0.25	[ : 0.16	w : 0.08	u : 0.08	! : 0.08	x : 0.08	d : 0.08	r : 0.08	t : 0.08	
v : 0.25	b : 0.16	w : 0.08	u : 0.08	x : 0.08	d : 0.08	c : 0.08	r : 0.08	t : 0.08	
v : 0.25	b : 0.16	w : 0.08	u : 0.08	x : 0.08	d : 0.08	c : 0.08	r : 0.08	t : 0.08	
v : 0.25	r : 0.16	w : 0.08	u : 0.08	^ : 0.08	x : 0.08	d : 0.08	c : 0.08	t : 0.08	
r : 0.33	v : 0.25	w : 0.08	u : 0.08	^ : 0.08	x : 0.08	t : 0.08	
r : 0.33	v : 0.25	w : 0.08	u : 0.08	^ : 0.08	x : 0.08	t : 0.08	
r : 0.33	v : 0.25	w : 0.08	u : 0.08	^ : 0.08	x : 0.08	t : 0.08	
r : 0.33	v : 0.25	w : 0.08	u : 0.08	^ : 0.08	x : 0.08	t : 0.08	
r : 0.33	v : 0.25	w : 0.08	u : 0.08	^ : 0.08	x : 0.08	t : 0.08	
v : 0.25	r : 0.25	w : 0.08	u : 0.08	^ : 0.08	x : 0.08	g : 0.08	t : 0.08	
v : 0.25	r : 0.25	w : 0.08	u : 0.08	^ : 0.08	x : 0.08	g : 0.08	t : 0.08	
v : 0.25	r : 0.25	w : 0.08	u : 0.08	^ : 0.08	x : 0.08	g : 0.08	c : 0.08	
v : 0.25	b : 0.16	r : 0.16	w : 0.08	e : 0.08	^ : 0.08	g : 0.08	c : 0.08	
b : 0.16	c : 0.16	w : 0.08	h : 0.08	i : 0.08	e : 0.08	a : 0.08	^ : 0.08	d : 0.08	g : 0.08	
g : 0.16	2 : 0.16	h : 0.08	i : 0.08	e : 0.08	] : 0.08	^ : 0.08	4 : 0.08	d : 0.08	c : 0.08	
g : 0.16	e : 0.16	2 : 0.16	h : 0.08	i : 0.08	^ : 0.08	4 : 0.08	d : 0.08	c : 0.08	
g : 0.25	e : 0.16	h : 0.08	i : 0.08	^ : 0.08	4 : 0.08	d : 0.08	] : 0.08	c : 0.08	
g : 0.25	h : 0.16	i : 0.08	] : 0.08	e : 0.08	^ : 0.08	4 : 0.08	b : 0.08	c : 0.08	
g : 0.33	h : 0.16	c : 0.16	i : 0.08	e : 0.08	^ : 0.08	b : 0.08	
g : 0.33	h : 0.16	i : 0.08	c : 0.08	e : 0.08	^ : 0.08	a : 0.08	] : 0.08	
g : 0.41	h : 0.16	i : 0.08	c : 0.08	: : 0.08	^ : 0.08	2 : 0.08	

#score	202.24118246165824
#seq	12
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_UTR_m1_run1.txt

#BEAR
##===========nnnnn===========c	chr17:41154805-41155045(+)$1	240	12	42	15.5787
!!dddd"""cccooooooccc22ddddeee	chr5:159855550-159855833(+)$1	283	221	251	13.0000
[ccc[bb!!cccoooooocccbbccc]ccc	chr15:79165205-79165490(+)$1	285	20	50	13.7672
"""iiiiiiiiiooooooiiiiiiiiiddd	chr1:53692529-53692798(-)$1	269	184	214	16.0502
hhhhhhh"""cccooooooccchhhhhhhh	chr3:197676964-197677188(+)$1	224	157	187	12.6315
ccccccccccccooooooccc22ccc]ccc	chr8:99057634-99057850(-)$1	216	120	150	13.8143
""ggggggg[bboooooobb]ggggggg>>	chr6:31698285-31698537(-)$1	252	112	142	14.1282
[ccc!!bb[cccoooooocccbb22ccc]c	chr22:21998434-21998668(+)$1	234	182	212	13.2477
iiiiiiiii!!bbmmmmbb22iiiiiiiii	chr6:31694791-31695084(-)$1	293	18	48	12.5900
ggggg####cccooooooccc22ggggggg	chr9:140137939-140138242(+)$1	303	46	76	15.7092
iiiii####cccooooooccc333iiiiii	chr14:70238223-70238472(+)$1	249	129	159	17.4049
========vvvvvvvvvvvvv=========	chr18:19209003-19209278(+)$1	275	151	181	11.9479
iiiiiiii[cccooooooccc]iiiiiiii	chr19:44111533-44111822(-)$1	289	21	51	17.5123
===========rrrrrrrrr==========	chr8:146017649-146017873(-)$1	224	20	50	14.5240
=============nnnnn============	chrX:119010486-119010705(+)$1	219	83	113	16.0178
ccc####cccbboooooobb]ccc4444cc	chr16:227331-227541(+)$1	210	139	169	12.5933
"""==========lll==========4444	chr1:28564460-28564700(+)$1	240	34	64	14.5503
iiiiiiii####==========ccc[ccc[	chr12:56510460-56510686(+)$1	226	134	164	11.8484
hhhhhhh"""cccooooooccchhhhhhhh	chr3:197676988-197677192(+)$1	204	133	163	12.6315
!bb!!gggggggooooooggggggg4444b	chr1:45976849-45977108(-)$1	259	82	112	13.2731
ggggggg[cccooooooccc333ggggggg	chr15:44063538-44063789(+)$1	251	30	60	14.9662
==[eeeee[a[aooooooa]a]eeeee]==	chr7:127231545-127231836(+)$1	291	101	131	13.8712
:iiiiiiiii!!bblllbb22iiiiiiiii	chrX:153609563-153609816(+)$1	253	223	253	11.8493
[ggggggg[cccoooooocccggggggg22	chr3:9519598-9519849(+)$1	251	143	173	15.3190
iiii[a####bboooooobb333a]iiiii	chr20:57607221-57607502(-)$1	281	60	90	16.5393
:ggggggg[cccooooooccc]ggggggg:	chr15:66797024-66797272(-)$1	248	101	131	13.7289
=============nnnnn============	chrX:119010466-119010686(+)$1	220	103	133	16.0178
hhhhhh[bbcccooooooccc]bb]hhhhh	chr16:89627017-89627221(+)$1	204	34	64	12.6850
cc[dddd[bb[aooooooabb]ddddccc]	chr19:58898538-58898791(+)$1	253	137	167	11.9356
iiiccc"""cccooooooccc333ccc>>>	chr6:170844135-170844411(-)$1	276	154	184	15.2830
b!!ccc"""a[aooooooa]a4444ccc22	chr19:49611416-49611721(+)$1	305	98	128	15.0416
iiiiiiiii[bboooooobb]iiiiiiiii	chr8:101715240-101715486(-)$1	246	123	153	16.5919
=============nnnnn============	chr19:54704628-54704839(+)$1	211	156	186	16.0178
=======####arrrrrrrrra4444====	chrX:118920375-118920621(-)$1	246	75	105	13.3465
eggggggg"""aooooooa333gggggggI	chr6:31802691-31802931(+)$1	240	136	166	15.2620
"""ccciiiiiiiiillliiiiiiiii444	chr7:99690351-99690706(-)$1	355	191	221	12.7796
ggggggg####cccmmmmccc22ggggggg	chr11:75116575-75116818(+)$1	243	161	191	12.0634
===========nnnnn===========ccc	chr11:9466843-9467089(+)$1	246	122	152	14.2491
===========qqqqqqqq===========	chr17:4848897-4849130(-)$1	233	145	175	12.6264
==========bbnnnnnbb333========	chr19:4657706-4657989(-)$1	283	99	129	14.9474
ccc[iiiiiiiiinnnnniiiiiiiii]cc	chr11:404656-404915(+)$1	259	12	42	13.9199
ff[ccc[a"""ccclllccc4444a]ccc]	chr2:55459723-55459945(+)$1	222	63	93	11.7930
ddd[iiiiiiiiinnnnniiiiiiiii]dd	chr4:56461337-56461565(-)$1	228	172	202	12.9209
:iiiiiiiii[annnnna]iiiiiiiiicc	chr11:812698-812942(+)$1	244	115	145	13.5317
========"""aooooooa333========	chr1:116947129-116947436(+)$1	307	271	301	18.8801
ggggggg!!bboooooobb333ggggggg:	chr16:89629335-89629584(+)$1	249	47	77	13.5574
iiiiiiii[ddddmmmmdddd]iiiiiiii	chr8:101734160-101734372(-)$1	212	91	121	11.7681
ddd!!gggggggooooooggggggg22ddd	chr17:79991706-79991976(+)$1	270	212	242	12.4399
b!!ccc"""a[aooooooa]a4444ccc22	chr19:49611348-49611593(+)$1	245	166	196	15.0416
=============nnnnn============	chrX:119010432-119010666(+)$1	234	137	167	16.0178
hhhhhhhhcccaooooooa]ccc22hhhhh	chr19:46112612-46112935(-)$1	323	10	40	12.5496

#otherMatches

#Seq PSSM
GUGAAUGGUGGAGUAUGGUUUCACUAUUUC	chr17:41154805-41155045(+)$1	240	12	42	15.5787
UCCAUGGAGGUUACUUAAAAUAACAUGAAA	chr5:159855550-159855833(+)$1	283	221	251	13.0000
GCUGGCAAAUCCGGCCCAGGAUGUAGAGCU	chr15:79165205-79165490(+)$1	285	20	50	13.7672
UAUGUGAUAAAAUCCAAUUUUUAUUAUUUU	chr1:53692529-53692798(-)$1	269	184	214	16.0502
GGGGCAAAUAACCGGAGUAGGUUUGUUCCU	chr3:197676964-197677188(+)$1	224	157	187	12.6315
UGGGCUCCUACCGACCGAGGUUUAGGCAGC	chr8:99057634-99057850(-)$1	216	120	150	13.8143
GGUGGGAUGAGUAGGACAACAUAUUUCAGU	chr6:31698285-31698537(-)$1	252	112	142	14.1282
CCAGGAGGUGCCAGCCCAGGCCCAGUUGAU	chr22:21998434-21998668(+)$1	234	182	212	13.2477
GCGCCGGGCUCAGCUCCCUCUGCUUGGUGC	chr6:31694791-31695084(-)$1	293	18	48	12.5900
AGGCUGAGGAGGAGGUGGCCUAGAGCCUUC	chr9:140137939-140138242(+)$1	303	46	76	15.7092
UGAAAACUAAUUGUAUUAAAUGUCUUUUGA	chr14:70238223-70238472(+)$1	249	129	159	17.4049
UGUUUGUUUAUGUCAGUUUUUAAUAAACAU	chr18:19209003-19209278(+)$1	275	151	181	11.9479
CACUUCAUGCUGCAUGCCCGGGGUGAGGUG	chr19:44111533-44111822(-)$1	289	21	51	17.5123
GGCCGUGGCGCGCCCGGAAGGUGUCGCGGC	chr8:146017649-146017873(-)$1	224	20	50	14.5240
UAUUAUGUAGCAUGCAAUGUGUUAUGUAGU	chrX:119010486-119010705(+)$1	219	83	113	16.0178
UUCCUGCACCCGUACCCCCGUGGUCUUUGA	chr16:227331-227541(+)$1	210	139	169	12.5933
CACCGUGUGCCAUAGAAUGGCACAUGUCAU	chr1:28564460-28564700(+)$1	240	34	64	14.5503
CUGGUAGUAAGCUUGGGAGGUAGGAGUUGG	chr12:56510460-56510686(+)$1	226	134	164	11.8484
GGGGCAAAUAACCGGAGUAGGUUUGUUCCU	chr3:197676988-197677192(+)$1	204	133	163	12.6315
AAGAAUAUUUCUCCAAGCAGAAGUGAGCGC	chr1:45976849-45977108(-)$1	259	82	112	13.2731
UGUUUCUUAGCUGCACUGUUUAUGGAAAUA	chr15:44063538-44063789(+)$1	251	30	60	14.9662
UGUUUUGGGUGUACUCUAGGGGCCAGGUUG	chr7:127231545-127231836(+)$1	291	101	131	13.8712
UCCUCCUUUUGUCAUCUUGUUGGGGGGAGG	chrX:153609563-153609816(+)$1	253	223	253	11.8493
GGAGUGUUUACACCUUGCUGUAACAUUUGA	chr3:9519598-9519849(+)$1	251	143	173	15.3190
GCGGUGAUUGGCAGGUCCGCACGCCCCGCC	chr20:57607221-57607502(-)$1	281	60	90	16.5393
AGCAGCCGGGCUGAGAGGAGCGUGGCUGUC	chr15:66797024-66797272(-)$1	248	101	131	13.7289
UAUUAUGUAGCAUGCAAUGUGUUAUGUAGU	chrX:119010466-119010686(+)$1	220	103	133	16.0178
CCCUGCUAUCAUCCCAGAGUGCAUUGCGGG	chr16:89627017-89627221(+)$1	204	34	64	12.6850
AGUGACAGAGACGCUCAGGCUGUGUUCUCA	chr19:58898538-58898791(+)$1	253	137	167	11.9356
UGGAACUGUACCUUGGAUGGUUUUGUUUAU	chr6:170844135-170844411(-)$1	276	154	184	15.2830
gagcacaaacggggggagcggggcagugag	chr19:49611416-49611721(+)$1	305	98	128	15.0416
GUAAAAUAUAAAAACAAAUUAAUGUUUUAU	chr8:101715240-101715486(-)$1	246	123	153	16.5919
AGGGUUUGGGUUGGAUGGUGGCCCGGGCCU	chr19:54704628-54704839(+)$1	211	156	186	16.0178
CGUGUUUUCCUCUCUGAAUCUGUUAUGAAC	chrX:118920375-118920621(-)$1	246	75	105	13.3465
GGCUGGGGUAGGAGAGGGCGGUCCCCAGUG	chr6:31802691-31802931(+)$1	240	136	166	15.2620
GCUGGCCUGCCCCUUGGGAAGGGGCAGUGA	chr7:99690351-99690706(-)$1	355	191	221	12.7796
GGUCUGACUAGACUGUUCAGUAUUCAGACU	chr11:75116575-75116818(+)$1	243	161	191	12.0634
UAUUUUCUUUAUUUUUUGAAGAAAGUAAGA	chr11:9466843-9467089(+)$1	246	122	152	14.2491
GGGUUUUUUUUUUCUGAAUAAAAAAGAUUC	chr17:4848897-4849130(-)$1	233	145	175	12.6264
GUUGCCUUGUCCGGAGGGGCUUGCAGGGUG	chr19:4657706-4657989(-)$1	283	99	129	14.9474
ACGGAGGGGCCCCUCGCUGGGGCCCCUGUG	chr11:404656-404915(+)$1	259	12	42	13.9199
GCUCCGGGAAACCCCGUGGGCCUGCGCGGC	chr2:55459723-55459945(+)$1	222	63	93	11.7930
UGCUUAGUGUUUUAAUGAGAAAUACUGUGU	chr4:56461337-56461565(-)$1	228	172	202	12.9209
UGGGAUUUGGCCUUUUUGAUUAAAUUCCUG	chr11:812698-812942(+)$1	244	115	145	13.5317
UCUGUGCCCUCGUCGCUUCUUUGGUACAGA	chr1:116947129-116947436(+)$1	307	271	301	18.8801
GGCUCUUCGGCAUACGGGCAAAAAGAGCCA	chr16:89629335-89629584(+)$1	249	47	77	13.5574
AGUGUGUGCUCCGGGCUCGGAACACACauu	chr8:101734160-101734372(-)$1	212	91	121	11.7681
GCCGGGAGGGAGCAGGGUCUCCCUCAGGGC	chr17:79991706-79991976(+)$1	270	212	242	12.4399
gagcacaaacggggggagcggggcagugag	chr19:49611348-49611593(+)$1	245	166	196	15.0416
UAUUAUGUAGCAUGCAAUGUGUUAUGUAGU	chrX:119010432-119010666(+)$1	234	137	167	16.0178
UCUGAUGCGGCCAGGGAAGAGUCAGGUGUC	chr19:46112612-46112935(-)$1	323	10	40	12.5496

#DB
..(((((((((((.....))))))))))))	chr17:41154805-41155045(+)$1	1	12	42	15.5787
..((((...(((......)))..)))))))	chr5:159855550-159855833(+)$1	1	221	251	13.0000
.(((.((..(((......)))))))).)))	chr15:79165205-79165490(+)$1	1	20	50	13.7672
...(((((((((......))))))))))))	chr1:53692529-53692798(-)$1	1	184	214	16.0502
(((((((...(((......)))))))))))	chr3:197676964-197677188(+)$1	1	157	187	12.6315
)))(((((((((......)))..))).)))	chr8:99057634-99057850(-)$1	1	120	150	13.8143
..(((((((.((......)).)))))))..	chr6:31698285-31698537(-)$1	1	112	142	14.1282
.(((..((.(((......)))))..))).)	chr22:21998434-21998668(+)$1	1	182	212	13.2477
(((((((((..((....))..)))))))))	chr6:31694791-31695084(-)$1	1	18	48	12.5900
(((((....(((......)))..)))))))	chr9:140137939-140138242(+)$1	1	46	76	15.7092
(((((....(((......)))...))))))	chr14:70238223-70238472(+)$1	1	129	159	17.4049
((((((((.............)))))))))	chr18:19209003-19209278(+)$1	1	151	181	11.9479
((((((((.(((......))).))))))))	chr19:44111533-44111822(-)$1	1	21	51	17.5123
(((((((((((.........))))))))))	chr8:146017649-146017873(-)$1	1	20	50	14.5240
(((((((((((((.....))))))))))))	chrX:119010486-119010705(+)$1	1	83	113	16.0178
(((....(((((......)).)))....))	chr16:227331-227541(+)$1	1	139	169	12.5933
...((((((((((...))))))))))....	chr1:28564460-28564700(+)$1	1	34	64	14.5503
((((((((....(((((((((((((.(((.	chr12:56510460-56510686(+)$1	1	134	164	11.8484
(((((((...(((......)))))))))))	chr3:197676988-197677192(+)$1	1	133	163	12.6315
.((..(((((((......)))))))....)	chr1:45976849-45977108(-)$1	1	82	112	13.2731
(((((((.(((......)))...)))))))	chr15:44063538-44063789(+)$1	1	30	60	14.9662
((.(((((.(.(......).).))))).))	chr7:127231545-127231836(+)$1	1	101	131	13.8712
.(((((((((..((...))..)))))))))	chrX:153609563-153609816(+)$1	1	223	253	11.8493
.(((((((.(((......))))))))))..	chr3:9519598-9519849(+)$1	1	143	173	15.3190
((((.(....((......))...).)))))	chr20:57607221-57607502(-)$1	1	60	90	16.5393
.(((((((.(((......))).))))))).	chr15:66797024-66797272(-)$1	1	101	131	13.7289
(((((((((((((.....))))))))))))	chrX:119010466-119010686(+)$1	1	103	133	16.0178
((((((.(((((......))).)).)))))	chr16:89627017-89627221(+)$1	1	34	64	12.6850
((.((((.((.(......))).))))))).	chr19:58898538-58898791(+)$1	1	137	167	11.9356
((((((...(((......)))...)))...	chr6:170844135-170844411(-)$1	1	154	184	15.2830
(..(((...(.(......).)....)))..	chr19:49611416-49611721(+)$1	1	98	128	15.0416
(((((((((.((......)).)))))))))	chr8:101715240-101715486(-)$1	1	123	153	16.5919
(((((((((((((.....))))))))))))	chr19:54704628-54704839(+)$1	1	156	186	16.0178
(((((((....(.........)....))))	chrX:118920375-118920621(-)$1	1	75	105	13.3465
)(((((((...(......)...))))))))	chr6:31802691-31802931(+)$1	1	136	166	15.2620
...((((((((((((...)))))))))...	chr7:99690351-99690706(-)$1	1	191	221	12.7796
(((((((....(((....)))..)))))))	chr11:75116575-75116818(+)$1	1	161	191	12.0634
(((((((((((.....)))))))))))(((	chr11:9466843-9467089(+)$1	1	122	152	14.2491
(((((((((((........)))))))))))	chr17:4848897-4849130(-)$1	1	145	175	12.6264
((((((((((((.....))...))))))))	chr19:4657706-4657989(-)$1	1	99	129	14.9474
(((.(((((((((.....))))))))).))	chr11:404656-404915(+)$1	1	12	42	13.9199
((.(((.(...(((...)))....).))).	chr2:55459723-55459945(+)$1	1	63	93	11.7930
(((.(((((((((.....))))))))).))	chr4:56461337-56461565(-)$1	1	172	202	12.9209
.(((((((((.(.....).)))))))))((	chr11:812698-812942(+)$1	1	115	145	13.5317
((((((((...(......)...))))))))	chr1:116947129-116947436(+)$1	1	271	301	18.8801
(((((((..((......))...))))))).	chr16:89629335-89629584(+)$1	1	47	77	13.5574
((((((((.((((....)))).))))))))	chr8:101734160-101734372(-)$1	1	91	121	11.7681
(((..(((((((......)))))))..)))	chr17:79991706-79991976(+)$1	1	212	242	12.4399
(..(((...(.(......).)....)))..	chr19:49611348-49611593(+)$1	1	166	196	15.0416
(((((((((((((.....))))))))))))	chrX:119010432-119010666(+)$1	1	137	167	16.0178
((((((((((((......).)))..)))))	chr19:46112612-46112935(-)$1	1	10	40	12.5496

#PSSM
= : 0.23	i : 0.15	" : 0.07	h : 0.07	c : 0.07	g : 0.07	[ : 0.05	: : 0.05	! : 0.03	b : 0.03	d : 0.03	# : 0.01	e : 0.01	f : 0.01	
= : 0.23	i : 0.19	g : 0.13	c : 0.11	" : 0.07	h : 0.07	! : 0.05	d : 0.03	# : 0.01	b : 0.01	f : 0.01	
= : 0.23	i : 0.19	g : 0.15	c : 0.09	h : 0.07	d : 0.05	" : 0.05	[ : 0.05	! : 0.03	b : 0.01	
= : 0.25	i : 0.19	c : 0.15	g : 0.15	h : 0.07	d : 0.03	! : 0.03	[ : 0.03	# : 0.01	e : 0.01	
= : 0.25	i : 0.21	g : 0.15	c : 0.11	h : 0.07	! : 0.05	d : 0.03	[ : 0.03	# : 0.01	e : 0.01	
= : 0.25	i : 0.19	g : 0.17	c : 0.11	h : 0.07	# : 0.05	d : 0.03	b : 0.01	! : 0.01	e : 0.01	a : 0.01	
= : 0.25	i : 0.21	g : 0.17	" : 0.07	# : 0.07	h : 0.05	b : 0.03	[ : 0.03	c : 0.01	e : 0.01	d : 0.01	
= : 0.23	i : 0.21	" : 0.11	g : 0.11	# : 0.09	! : 0.03	c : 0.03	b : 0.03	[ : 0.03	e : 0.01	a : 0.01	h : 0.01	
= : 0.19	" : 0.17	i : 0.15	[ : 0.11	# : 0.11	c : 0.07	g : 0.05	! : 0.03	b : 0.03	v : 0.01	
c : 0.27	= : 0.19	i : 0.11	" : 0.09	# : 0.07	a : 0.05	[ : 0.03	g : 0.03	b : 0.03	! : 0.01	v : 0.01	d : 0.01	
c : 0.29	= : 0.17	b : 0.11	[ : 0.09	i : 0.07	# : 0.05	" : 0.05	! : 0.03	g : 0.03	v : 0.01	d : 0.01	
c : 0.29	a : 0.17	= : 0.11	b : 0.11	i : 0.07	g : 0.03	o : 0.03	v : 0.01	r : 0.01	# : 0.01	! : 0.01	n : 0.01	q : 0.01	d : 0.01	
o : 0.52	= : 0.13	c : 0.07	i : 0.05	n : 0.05	b : 0.03	r : 0.03	v : 0.01	q : 0.01	d : 0.01	
o : 0.56	n : 0.19	m : 0.03	r : 0.03	c : 0.03	v : 0.01	l : 0.01	= : 0.01	b : 0.01	i : 0.01	q : 0.01	
o : 0.56	n : 0.19	m : 0.05	l : 0.05	r : 0.03	v : 0.01	= : 0.01	i : 0.01	q : 0.01	
o : 0.56	n : 0.19	l : 0.07	m : 0.05	r : 0.03	v : 0.01	= : 0.01	q : 0.01	
o : 0.56	n : 0.17	m : 0.05	= : 0.05	l : 0.05	r : 0.03	v : 0.01	q : 0.01	
o : 0.52	n : 0.13	b : 0.07	= : 0.05	r : 0.03	c : 0.03	v : 0.01	l : 0.01	m : 0.01	q : 0.01	a : 0.01	d : 0.01	
c : 0.27	= : 0.15	b : 0.15	a : 0.13	i : 0.07	o : 0.03	r : 0.03	g : 0.03	v : 0.01	q : 0.01	] : 0.01	d : 0.01	
c : 0.31	= : 0.17	i : 0.09	b : 0.09	] : 0.07	3 : 0.07	2 : 0.03	r : 0.03	g : 0.03	v : 0.01	d : 0.01	
c : 0.29	= : 0.19	3 : 0.11	i : 0.09	] : 0.05	a : 0.05	2 : 0.03	g : 0.03	v : 0.01	b : 0.01	r : 0.01	4 : 0.01	d : 0.01	
= : 0.21	i : 0.15	3 : 0.15	] : 0.11	2 : 0.07	c : 0.07	g : 0.07	4 : 0.05	b : 0.03	a : 0.01	
= : 0.23	i : 0.19	g : 0.13	2 : 0.07	3 : 0.07	4 : 0.07	b : 0.05	c : 0.05	h : 0.03	e : 0.01	d : 0.01	
= : 0.23	i : 0.19	g : 0.19	c : 0.07	4 : 0.07	d : 0.03	h : 0.03	2 : 0.03	3 : 0.03	e : 0.01	a : 0.01	b : 0.01	
= : 0.23	i : 0.21	g : 0.19	c : 0.07	4 : 0.07	d : 0.03	h : 0.03	2 : 0.03	] : 0.03	e : 0.01	a : 0.01	
= : 0.23	i : 0.23	g : 0.15	c : 0.11	h : 0.07	4 : 0.05	d : 0.03	[ : 0.01	e : 0.01	] : 0.01	2 : 0.01	
= : 0.23	i : 0.23	g : 0.15	c : 0.13	h : 0.07	4 : 0.05	] : 0.03	d : 0.01	e : 0.01	2 : 0.01	
= : 0.21	c : 0.17	g : 0.15	i : 0.15	h : 0.07	4 : 0.07	] : 0.05	d : 0.03	e : 0.01	> : 0.01	
= : 0.23	c : 0.17	i : 0.13	g : 0.11	h : 0.07	d : 0.05	4 : 0.05	2 : 0.05	> : 0.03	e : 0.01	] : 0.01	
= : 0.21	c : 0.15	i : 0.13	h : 0.07	d : 0.05	g : 0.05	2 : 0.05	> : 0.03	4 : 0.03	: : 0.03	] : 0.03	e : 0.01	[ : 0.01	b : 0.01	I : 0.01	

#score	720.3642320562436
#seq	51
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_transcript_m2_run1.txt

#BEAR
ggg!!ddddmmmmdddd6666	chrX:108908596-108908878(-)$1	282	89	110	12.7362
dccc[ddddmmmmddddccc]	chr5:72794374-72794625(+)$1	251	147	168	13.7119
cddddddddmmmmdddd]ddd	chr6:30570039-30570289(-)$1	250	102	123	13.5845
:ddddddddmmmmdddd]ddd	chr10:94452003-94452244(+)$1	241	15	36	12.6082
ddddd[ddddllldddd]ddd	chr3:53874919-53875150(-)$1	231	157	178	10.9984
ccc!!ddddmmmmdddd]ccc	chr16:30774640-30774893(+)$1	253	143	164	14.7706
dd"""ddddmmmmdddddddd	chr17:17722435-17722696(-)$1	261	29	50	13.6127
ddd!!ddddmmmmdddd]ddd	chr12:103248713-103248977(-)$1	264	190	211	14.5760
cc[a[ddddmmmmdddd]acc	chr17:73872744-73872996(-)$1	252	53	74	14.5397
e[cccddddmmmmdddd]ccc	chr17:80195899-80196147(+)$1	248	22	43	13.6473
dddd[ddddllldddddddd]	chr20:62669735-62669978(+)$1	243	54	75	11.1627
[bb!!ddddmmmmdddd]bbd	chr16:11349744-11350007(-)$1	263	58	79	13.5258
iii!!ddddmmmmdddd]iii	chr1:70705019-70705291(+)$1	272	152	173	14.2836
dddd[ddddmmmmdddddddd	chr16:70072732-70072958(-)$1	226	198	219	13.4738
[bbcccddddllldddd]ccc	chr1:95392219-95392477(-)$1	258	105	126	10.7966
[a[a[ddddmmmmdddd]aab	chr22:19165066-19165303(-)$1	237	109	130	13.9825
hhh"""ddddllldddd333h	chr6:37138565-37138886(+)$1	321	282	303	11.5919
"ccc[ddddmmmmdddd4444	chr6:160489182-160489416(+)$1	234	138	159	14.6035
[ddddddddmmmmdddd4444	chr1:19504081-19504331(-)$1	250	207	228	13.8882
ccc!!ddddmmmmdddd333c	chr16:29815925-29816195(+)$1	270	34	55	15.2094
eeeeeddddmmmmdddd4444	chr3:50255712-50255978(+)$1	266	136	157	13.3858
iii!!ddddmmmmdddd22ii	chr11:47281209-47281498(+)$1	289	260	281	14.2139
:ccc[ddddmmmmdddd]ccc	chr9:117029712-117029937(+)$1	225	173	194	13.5658
!ccc[ddddmmmmddddccc]	chr12:76424091-76424374(-)$1	283	148	169	13.7111
====[ddddmmmmdddd7777	chr11:62620417-62620679(-)$1	262	216	237	12.4261
c]cccddddmmmmdddd:ccc	chr11:121421160-121421421(+)$1	261	58	79	12.2940
ffff[ddddmmmmddddffff	chr14:102548639-102548882(-)$1	243	92	113	12.0504
cc[dddd[ammmma]ddddcc	chr20:30193743-30194001(+)$1	258	48	69	9.9333
bb"""ddddmmmmdddd333b	chr1:11867089-11867295(+)$1	206	14	35	14.1433
ddd!!ddddmmmmdddd22dd	chr12:50480261-50480544(+)$1	283	22	43	14.4822
ddddd[ddddllldddd]ddd	chr2:135815473-135815819(+)$1	346	175	196	10.9984
ddd!!ddddmmmmdddd22dd	chr2:27884865-27885148(-)$1	283	88	109	14.4822
dddd!!ddddllldddd22dd	chr16:16291840-16292086(-)$1	246	50	71	11.6841
dddd[ddddmmmmdddd]ddd	chr16:22308913-22309151(+)$1	238	163	184	14.3146
eee!!ddddmmmmdddd333e	chr6:158485703-158486006(+)$1	303	109	130	14.6001
dddd[ddddmmmmdddd]ddd	chr10:124177323-124177613(+)$1	290	141	162	14.3146
dddd[ddddmmmmdddddddd	chr22:38699110-38699359(-)$1	249	100	121	13.4738
c[ccc[ddddllldddd]ccc	chr16:16276689-16276944(-)$1	255	93	114	11.1823
cc"""ddddmmmmdddd333c	chr13:111563023-111563271(-)$1	248	25	46	15.0698
bb"""ddddmmmmdddd333b	chr11:105967317-105967609(+)$1	292	151	172	14.1433
d[bb[ddddmmmmdddd]bb]	chr20:5932982-5933227(+)$1	245	129	150	13.1209
iiii[ddddllldddd333ii	chr3:52325611-52325916(+)$1	305	155	176	11.3646
cc"""ddddmmmmdddd333c	chr18:2923632-2923877(-)$1	245	203	224	15.0698
eeebbddddmmmmdddd]bb]	chr17:63545651-63545939(-)$1	288	159	180	12.1853
ccc!!ddddmmmmdddd]ccc	chr14:21546505-21546747(+)$1	242	28	49	14.7706
eeee[ddddmmmmdddd333e	chr1:21102959-21103218(-)$1	259	39	60	14.2131
$ccc[ddddmmmmdddd]ccc	chr12:56563217-56563501(-)$1	284	124	145	14.2305

#otherMatches

#Seq PSSM
UCCCAGUGCAUUGGUACAAAU	chrX:108908596-108908878(-)$1	282	89	110	12.7362
UGACUCUCGGGGGCGAGGUCG	chr5:72794374-72794625(+)$1	251	147	168	13.7119
GGAGGUGGUGGGCAUCGUCCU	chr6:30570039-30570289(-)$1	250	102	123	13.5845
UGGGUGGCCUCCUGGCCUACC	chr10:94452003-94452244(+)$1	241	15	36	12.6082
cacagagugcacCGUAUCCUG	chr3:53874919-53875150(-)$1	231	157	178	10.9984
GGGGAGCUGUCUUCAGCGCCU	chr16:30774640-30774893(+)$1	253	143	164	14.7706
CUCUGGCACCACUGUGCAGAC	chr17:17722435-17722696(-)$1	261	29	50	13.6127
GUUGAUUCCUCCAGGAAGAAC	chr12:103248713-103248977(-)$1	264	190	211	14.5760
GGCUGUGGCCUCUGCCAGACC	chr17:73872744-73872996(-)$1	252	53	74	14.5397
GCUGGGGCUAGCGGGUCUCCA	chr17:80195899-80196147(+)$1	248	22	43	13.6473
ACGCUGCGCCAGGUGUGCGUC	chr20:62669735-62669978(+)$1	243	54	75	11.1627
cgccccgccgccAGGUGAGCC	chr16:11349744-11350007(-)$1	263	58	79	13.5258
AGGAGGAGGACUCCCUCAUCU	chr1:70705019-70705291(+)$1	272	152	173	14.2836
UCAGUAGUGAUUGCGCUCUGA	chr16:70072732-70072958(-)$1	226	198	219	13.4738
gcgggggcccccggggcACCC	chr1:95392219-95392477(-)$1	258	105	126	10.7966
AGACGGGCGGCCCCGCUGGCC	chr22:19165066-19165303(-)$1	237	109	130	13.9825
GGGUGAGGGGCGCCCCCGACU	chr6:37138565-37138886(+)$1	321	282	303	11.5919
AGGUACAGUGACAACUGGGAA	chr6:160489182-160489416(+)$1	234	138	159	14.6035
AGACAGGCCGGCGGGCCAUAU	chr1:19504081-19504331(-)$1	250	207	228	13.8882
UUGCAUAAUAAGAAUUAACCC	chr16:29815925-29816195(+)$1	270	34	55	15.2094
GGGGCUGGUUGUGGCCAUGGU	chr3:50255712-50255978(+)$1	266	136	157	13.3858
CUGGAGGCUGCAGAGCCCACA	chr11:47281209-47281498(+)$1	289	260	281	14.2139
CAGAUGGUGGCCACAUCCUCU	chr9:117029712-117029937(+)$1	225	173	194	13.5658
GGAAGCUUGUUCACAGGUUCG	chr12:76424091-76424374(-)$1	283	148	169	13.7111
CCAGAGCCUGUAAAGGUGAAC	chr11:62620417-62620679(-)$1	262	216	237	12.4261
UGUAUUCCCAGCUGGGAUGCC	chr11:121421160-121421421(+)$1	261	58	79	12.2940
UGAUUACAGGUGGUUGUGUCA	chr14:102548639-102548882(-)$1	243	92	113	12.0504
GUUCGCUGCGCUCGGAGCGGC	chr20:30193743-30194001(+)$1	258	48	69	9.9333
UAGCCACUGAUUUCAGUAAAU	chr1:11867089-11867295(+)$1	206	14	35	14.1433
uaguUCUUUGAGAGAAGCUUU	chr12:50480261-50480544(+)$1	283	22	43	14.4822
UCGAAAAGGUCAGAUCUAUUU	chr2:135815473-135815819(+)$1	346	175	196	10.9984
AAUGAAUCUGCAAAGGUGAGU	chr2:27884865-27885148(-)$1	283	88	109	14.4822
CUGGCUCUGUCCAGCGGCUCC	chr16:16291840-16292086(-)$1	246	50	71	11.6841
CCGCGGCCGACGCUGGCGGCG	chr16:22308913-22309151(+)$1	238	163	184	14.3146
GCCCCAGGGACCCCCCUCACG	chr6:158485703-158486006(+)$1	303	109	130	14.6001
GCUACUUCAAAUCUGAACUGG	chr10:124177323-124177613(+)$1	290	141	162	14.3146
GGGCAGGUGCCAACAUCGCCU	chr22:38699110-38699359(-)$1	249	100	121	13.4738
AUCCUUCCUCACAGAGGCGGG	chr16:16276689-16276944(-)$1	255	93	114	11.1823
GUGACUUAAUCUGUUAAAAAA	chr13:111563023-111563271(-)$1	248	25	46	15.0698
GGUUCCAUCUCAGGAUGAUUC	chr11:105967317-105967609(+)$1	292	151	172	14.1433
CAAUGCAGUCAACAUUGGAUC	chr20:5932982-5933227(+)$1	245	129	150	13.1209
GGGUUCAGCUCUGCUGCCUGC	chr3:52325611-52325916(+)$1	305	155	176	11.3646
UGUUUAUGCUGAAGCAUUCCC	chr18:2923632-2923877(-)$1	245	203	224	15.0698
AGGUCCUUCAAGAGGAGCGAU	chr17:63545651-63545939(-)$1	288	159	180	12.1853
GGCAGUGGGAAUGCCCAAGCC	chr14:21546505-21546747(+)$1	242	28	49	14.7706
UGCUACUUCGAGUGAGGCAGA	chr1:21102959-21103218(-)$1	259	39	60	14.2131
UUGGCGAGGGCAACCUCUcca	chr12:56563217-56563501(-)$1	284	124	145	14.2305

#DB
(((..((((....))))....	chrX:108908596-108908878(-)$1	1	89	110	12.7362
((((.((((....))))))).	chr5:72794374-72794625(+)$1	1	147	168	13.7119
(((((((((....)))).)))	chr6:30570039-30570289(-)$1	1	102	123	13.5845
.((((((((....)))).)))	chr10:94452003-94452244(+)$1	1	15	36	12.6082
)((((.((((...)))).)))	chr3:53874919-53875150(-)$1	1	157	178	10.9984
(((..((((....)))).)))	chr16:30774640-30774893(+)$1	1	143	164	14.7706
((...((((....))))))))	chr17:17722435-17722696(-)$1	1	29	50	13.6127
(((..((((....)))).)))	chr12:103248713-103248977(-)$1	1	190	211	14.5760
((.(.((((....)))).)))	chr17:73872744-73872996(-)$1	1	53	74	14.5397
(.(((((((....)))).)))	chr17:80195899-80196147(+)$1	1	22	43	13.6473
((((.((((...)))))))).	chr20:62669735-62669978(+)$1	1	54	75	11.1627
.((..((((....)))).)))	chr16:11349744-11350007(-)$1	1	58	79	13.5258
(((..((((....)))).)))	chr1:70705019-70705291(+)$1	1	152	173	14.2836
((((.((((....))))))))	chr16:70072732-70072958(-)$1	1	198	219	13.4738
.(((((((((...)))).)))	chr1:95392219-95392477(-)$1	1	105	126	10.7966
.(.(.((((....)))).)))	chr22:19165066-19165303(-)$1	1	109	130	13.9825
(((...((((...))))...)	chr6:37138565-37138886(+)$1	1	282	303	11.5919
.(((.((((....))))....	chr6:160489182-160489416(+)$1	1	138	159	14.6035
.((((((((....))))....	chr1:19504081-19504331(-)$1	1	207	228	13.8882
(((..((((....))))...)	chr16:29815925-29816195(+)$1	1	34	55	15.2094
(((((((((....))))....	chr3:50255712-50255978(+)$1	1	136	157	13.3858
(((..((((....))))..))	chr11:47281209-47281498(+)$1	1	260	281	14.2139
.(((.((((....)))).)))	chr9:117029712-117029937(+)$1	1	173	194	13.5658
.(((.((((....))))))).	chr12:76424091-76424374(-)$1	1	148	169	13.7111
((((.((((....))))....	chr11:62620417-62620679(-)$1	1	216	237	12.4261
).)))((((....)))).(((	chr11:121421160-121421421(+)$1	1	58	79	12.2940
((((.((((....))))))))	chr14:102548639-102548882(-)$1	1	92	113	12.0504
((.((((.(....).))))))	chr20:30193743-30194001(+)$1	1	48	69	9.9333
((...((((....))))...)	chr1:11867089-11867295(+)$1	1	14	35	14.1433
(((..((((....))))..))	chr12:50480261-50480544(+)$1	1	22	43	14.4822
(((((.((((...)))).)))	chr2:135815473-135815819(+)$1	1	175	196	10.9984
(((..((((....))))..))	chr2:27884865-27885148(-)$1	1	88	109	14.4822
((((..((((...))))..))	chr16:16291840-16292086(-)$1	1	50	71	11.6841
((((.((((....)))).)))	chr16:22308913-22309151(+)$1	1	163	184	14.3146
(((..((((....))))...)	chr6:158485703-158486006(+)$1	1	109	130	14.6001
((((.((((....)))).)))	chr10:124177323-124177613(+)$1	1	141	162	14.3146
((((.((((....))))))))	chr22:38699110-38699359(-)$1	1	100	121	13.4738
(.(((.((((...)))).)))	chr16:16276689-16276944(-)$1	1	93	114	11.1823
((...((((....))))...)	chr13:111563023-111563271(-)$1	1	25	46	15.0698
((...((((....))))...)	chr11:105967317-105967609(+)$1	1	151	172	14.1433
(.((.((((....)))).)).	chr20:5932982-5933227(+)$1	1	129	150	13.1209
((((.((((...))))...))	chr3:52325611-52325916(+)$1	1	155	176	11.3646
((...((((....))))...)	chr18:2923632-2923877(-)$1	1	203	224	15.0698
(((((((((....)))).)).	chr17:63545651-63545939(-)$1	1	159	180	12.1853
(((..((((....)))).)))	chr14:21546505-21546747(+)$1	1	28	49	14.7706
((((.((((....))))...)	chr1:21102959-21103218(-)$1	1	39	60	14.2131
.(((.((((....)))).)))	chr12:56563217-56563501(-)$1	1	124	145	14.2305

#PSSM
d : 0.29	c : 0.21	e : 0.10	[ : 0.08	i : 0.06	: : 0.04	b : 0.04	g : 0.02	h : 0.02	" : 0.02	! : 0.02	= : 0.02	f : 0.02	$ : 0.02	
d : 0.31	c : 0.25	b : 0.08	e : 0.08	[ : 0.06	i : 0.06	g : 0.02	a : 0.02	h : 0.02	= : 0.02	] : 0.02	f : 0.02	
d : 0.29	c : 0.23	" : 0.10	e : 0.08	[ : 0.06	b : 0.06	i : 0.06	g : 0.02	h : 0.02	= : 0.02	f : 0.02	
d : 0.25	! : 0.23	c : 0.19	" : 0.12	a : 0.04	e : 0.04	b : 0.04	= : 0.02	f : 0.02	i : 0.02	
[ : 0.36	! : 0.25	d : 0.12	" : 0.12	c : 0.08	e : 0.02	b : 0.02	
d : 0.87	[ : 0.06	c : 0.02	" : 0.02	! : 0.02	
d : 1.00	
d : 0.97	[ : 0.02	
d : 0.97	a : 0.02	
m : 0.82	d : 0.12	l : 0.04	
m : 0.82	l : 0.17	
m : 0.82	l : 0.17	
m : 0.82	l : 0.12	d : 0.04	
d : 0.97	a : 0.02	
d : 0.97	] : 0.02	
d : 1.00	
d : 0.97	3 : 0.02	
] : 0.42	3 : 0.19	d : 0.10	2 : 0.08	4 : 0.06	c : 0.04	6 : 0.02	7 : 0.02	: : 0.02	f : 0.02	
d : 0.25	c : 0.21	3 : 0.19	2 : 0.08	b : 0.06	4 : 0.06	a : 0.04	6 : 0.02	i : 0.02	7 : 0.02	f : 0.02	
d : 0.29	c : 0.25	3 : 0.17	b : 0.06	i : 0.06	4 : 0.06	6 : 0.02	a : 0.02	7 : 0.02	f : 0.02	
d : 0.29	c : 0.27	] : 0.10	i : 0.06	b : 0.06	4 : 0.06	e : 0.04	6 : 0.02	h : 0.02	7 : 0.02	f : 0.02	

#score	626.7294818505508
#seq	47
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_UTR_m3_run2.txt

#BEAR
###ggggggg"""cccmmmmccc]gggggggeee	chr2:153191667-153191973(+)$1	306	17	51	15.8354
d[bb!!bb[ccc[cccmmmmccc]ccc]bb22bb	chr16:75018827-75019090(-)$1	263	181	215	13.3221
!!ggggggg!!a[cccmmmmccc22a22gggggg	chr17:49337131-49337514(-)$1	383	210	244	16.4434
[ddddggggggg[cccmmmmccc]ggggggg]dd	chr2:153032077-153032375(-)$1	298	57	91	15.1740
ggddddbb####ddddmmmmdddd333bb]dddd	chr4:1341011-1341268(+)$1	257	74	108	11.7155
ffffccceeeee[cccmmmmccc]eeeee22ccc	chr17:42148183-42148474(+)$1	291	225	259	13.3734
gggggg[bb!!bb[bbmmmmbb]bb333bb]ggg	chr1:153895287-153895540(-)$1	253	122	156	12.3321
!dddda[eeeee[cccmmmmccceeeee]a4444	chrX:23801271-23801517(+)$1	246	69	103	13.5514
""dddd[eeeee!!ccclllccc22eeeee22dd	chr7:77166753-77167016(+)$1	263	158	192	11.7994
ddd==========[bbmmmmbb]==========D	chr8:146078188-146078498(-)$1	310	41	75	13.3050
c[ddddffffff[cccmmmmccc]ffffff22dd	chr10:103454730-103455039(-)$1	309	192	226	13.8198
gggggdddd####ccclllccc4444dddd]ggg	chr1:161015543-161015825(-)$1	282	53	87	12.3296
eeggggggga[bbcccmmmmccc]bb22a]gggg	chr2:170683908-170684203(+)$1	295	220	254	14.0373
$$$ggggggg!!ddddmmmmdddd]ggggggg22	chr11:9335956-9336258(-)$1	302	28	62	12.6388
::ffffff[aa!!cccmmmmccc22a]a]fffff	chr3:44596607-44596904(+)$1	297	126	160	13.6518
[dddddddd####cccmmmmcccdddd]dddd33	chr17:7124199-7124478(+)$1	279	158	192	13.5329
###ffffff[a!!cccmmmmccc22a]ffffffa	chr20:37590896-37591153(+)$1	257	181	215	15.7503
ddddffffff[a[cccmmmmccc22a]ffffff2	chr2:48541745-48542002(+)$1	257	217	251	15.1137
[ggggggg!!bb[cccmmmmcccbb22ggggggg	chr2:170550880-170551213(+)$1	333	17	51	14.6088
eeeddddccc[cccbbmmmmbb]ccc]ccc]ddd	chr17:45898966-45899278(-)$1	312	209	243	11.9941
bbdddd[ccc####bbmmmmbbccc]dddd]bb]	chr19:13842484-13842798(+)$1	314	3	37	12.1832
:ffffff[a[bb[cccmmmmccc]bba]ffffff	chr5:154238056-154238451(+)$1	395	180	214	12.9794
dddd!!==========mmmm==========22dd	chr3:38178319-38178688(-)$1	369	22	56	13.8114
:a[a[eeeee[ccc[ammmma]ccc]eeeee]a]	chr7:44887528-44887780(-)$1	252	153	187	11.6049
dd!!ffffff"""cccmmmmccc4444ffffff2	chr19:45147083-45147441(+)$1	358	175	209	15.2755
####ffffff!!ddddmmmmdddd]ffffff22b	chr11:70049322-70049692(+)$1	370	96	130	11.8504
dddd[eeeee####bbmmmmbb22eeeee]dddd	chr2:61764992-61765250(-)$1	258	181	215	12.4842
!ffffff[ccc!!cccmmmmcccccc]ffffffd	chr11:73471960-73472221(-)$1	261	45	79	14.4877
=====!!bb[bb[cccmmmmcccbbbb]======	chr6:24403074-24403370(+)$1	296	42	76	14.0327
dddd[ggggggg[ccclllcccggggggg]dddd	chr22:38902118-38902413(-)$1	295	129	163	11.9468
ggggggg[a[a[a[bbmmmmbb]a]aa]gggggg	chr12:54069709-54069961(-)$1	252	157	191	14.1280
gggg[ccc!!ccc[bbmmmmbbccc22ccc]ggg	chr3:160283039-160283345(-)$1	306	58	92	13.4312
ffffffffffff!!bbmmmmbb333ffffff333	chr6:692848-693199(-)$1	351	146	180	13.3885
cc[eeeee!!ccc[bbmmmmbb]ccceeeee]cc	chr12:121647838-121648117(+)$1	279	38	72	12.1042
ffff[ccc[a[a!!ccclllccc22a]a]ccc22	chr1:32645243-32645489(+)$1	246	62	96	13.1205
dddd[dddd"""ddddmmmmdddd22dddd333d	chr7:155437292-155437518(+)$1	226	184	218	12.1669
ccc"""ccc[a!!cccmmmmccc22accc]ccc]	chr19:58193360-58193655(+)$1	295	148	182	15.7966
ddd[==========ccclllccc]==========	chr9:5629111-5629402(+)$1	291	87	121	13.5518
==========!!ddddmmmmdddd==========	chr16:53088852-53089238(+)$1	386	17	51	13.9635
F:ccc!!bb[a!!cccmmmmccc333a]bb333c	chr15:52971357-52971660(-)$1	303	113	147	14.6678
g!!ccc[a!!ffffffmmmmffffff]a]ccc22	chr16:88729221-88729613(-)$1	392	41	75	11.5773
:dddd[bb[ccc[cccmmmmccc]ccc]bb]ddd	chr3:169899375-169899625(-)$1	250	130	164	13.0969
gggg[eeeeebb[cccmmmmccc]bb4444eeee	chr6:31926564-31926839(-)$1	275	39	73	13.6957
iiiiiiii[bb"""ccclllccc]bbiiiiiiii	chr1:92764324-92764636(-)$1	312	57	91	12.8223
[ccc"""dddd!!cccmmmmccc22dddd333cc	chr9:126692065-126692384(-)$1	319	234	268	14.7961
"""bb[bb[a!!ddddmmmmdddd]a]bb]bb33	chr19:39833020-39833316(+)$1	296	167	201	11.7106
======[eeeee[bbammmma]bb]eeeee]===	chr1:1551170-1551474(+)$1	304	32	66	12.3454
ffff[ffffff[acccmmmmccc]a]ffffffff	chr19:45873614-45873904(-)$1	290	40	74	13.9054
bbbb[ccc[gggggggmmmmggggggg333cccb	chr6:142468300-142468581(+)$1	281	216	250	11.7055
cc!!ggggggg"""bbmmmmbb333gggggggcc	chr19:58740195-58740414(+)$1	219	132	166	15.0518
iiiiii:ddddbbcccmmmmccc]bb]ddddccc	chr14:75593522-75593843(-)$1	321	69	103	11.8316
"gggggggccc[acccmmmmccc22a]ccc4444	chr6:5260790-5261074(-)$1	284	236	270	15.7786
eee"""ffffff[cccmmmmcccffffff]eeee	chr9:86595555-86595937(+)$1	382	162	196	13.0937
}BBggggggg"""cccmmmmccc333ggggggg:	chr20:30310175-30310451(-)$1	276	222	256	13.2612
ddd[ccc[dddd!!ccclllccc22dddd22ccc	chr1:153930909-153931182(-)$1	273	65	99	11.2679

#otherMatches

#Seq PSSM
UUUGUCUGCUCCAGGUGCUAGCCAGGCAGGCGCA	chr2:153191667-153191973(+)$1	306	17	51	15.8354
GCGCGAUGGAGCAGCGAAAACGUGGUUGUAGAGU	chr16:75018827-75019090(-)$1	263	181	215	13.3221
AGUCCCGGGGAGAGGCACCUGCCCCCAGCCCGGG	chr17:49337131-49337514(-)$1	383	210	244	16.4434
AGCCGGCCUGUCAGGCAAGAGCCGGGCAGGUGCG	chr2:153032077-153032375(-)$1	298	57	91	15.1740
GCCGGGCAGAGACCUGCGGCCAGGGCGUGUCCCG	chr4:1341011-1341268(+)$1	257	74	108	11.7155
UGGCUCUGGAUCACCUUUCUGGGCGAUCCCAAGA	chr17:42148183-42148474(+)$1	291	225	259	13.3734
gugcagccgucgccgccgccgcugcccccgUCUG	chr1:153895287-153895540(-)$1	253	122	156	12.3321
UUCCUUGGGUCAUGGUGCCAGCCUGACUGAGAAG	chrX:23801271-23801517(+)$1	246	69	103	13.5514
AUGAAGAGUCCUGACCACAAUGGGGAGGACAACU	chr7:77166753-77167016(+)$1	263	158	192	11.7994
CGGCCCGGAAGUGGCUCUCAGGGCGCUUCCGGGG	chr8:146078188-146078498(-)$1	310	41	75	13.3050
CGCUCGGGGCCCCCCGGGAACGGCGGGCCCggcg	chr10:103454730-103455039(-)$1	309	192	226	13.8198
CUUCCGCCCCUCACCAACAUGGCCGCGGGCUGGA	chr1:161015543-161015825(-)$1	282	53	87	12.3296
GCCCUCAGCCGGCCGGACAACCGCGCAGGUGCUG	chr2:170683908-170684203(+)$1	295	220	254	14.0373
UUACUGGGCCGGCGCGAGCACGCGAGGCUCGGGG	chr11:9335956-9336258(-)$1	302	28	62	12.6388
GCUUCGGUGCCGAGUGCCACCGCGAGUGGGCCGA	chr3:44596607-44596904(+)$1	297	126	160	13.6518
UGGGCCUUUGCAACACCCAGGUGAGGGCGCCCUA	chr17:7124199-7124478(+)$1	279	158	192	13.5329
GAUGCGGCGGCCUGACUUCGGUCUUGGCGCCGCG	chr20:37590896-37591153(+)$1	257	181	215	15.7503
GGGCGGAGCGGUCCCCUCCAGGGUCGGCGCUCCC	chr2:48541745-48542002(+)$1	257	217	251	15.1137
AGUUGUUACUCGUACCACGCGGUUGCUUGGCAAC	chr2:170550880-170551213(+)$1	333	17	51	14.6088
GCAAGGGCCAAGGAGUACUGGCGUCCAUGGACCC	chr17:45898966-45899278(-)$1	312	209	243	11.9941
UCGCCCUGACAACAGCGCCGGCGUCUGGGCUGAG	chr19:13842484-13842798(+)$1	314	3	37	12.1832
GGGGCUGCCGUCGCCGCCGUCGGGGagucagccc	chr5:154238056-154238451(+)$1	395	180	214	12.9794
CUCGCGUCUGUUCGCAGAGCUGUGGGCGGAGUUG	chr3:38178319-38178688(-)$1	369	22	56	13.8114
gcgggucggcagcgggagggcgcgcggccgagcg	chr7:44887528-44887780(-)$1	252	153	187	11.6049
GGCACUGGAGGAGCGGCCCCCCGGGGAUUCCAGG	chr19:45147083-45147441(+)$1	358	175	209	15.2755
GUAGUGAAUCAGGCACCGGAGUGCAGGUUCGGGG	chr11:70049322-70049692(+)$1	370	96	130	11.8504
CUCCUGCCGCUUCUGCUGCUGCCUGUGGCUGGAG	chr2:61764992-61765250(-)$1	258	181	215	12.4842
cggcggggccgcaggcucgcgcccgggcucgccc	chr11:73471960-73472221(-)$1	261	45	79	14.4877
UGGGGAAGUAGCACGCAGGCGCGGCACGCCCCGC	chr6:24403074-24403370(+)$1	296	42	76	14.0327
ACGCCUAAACCGCGGCACUGCCCGGUUUGAGCGU	chr22:38902118-38902413(-)$1	295	129	163	11.9468
CUGCGCACGCGCGCGGGACACCUCACCUUGCGCG	chr12:54069709-54069961(-)$1	252	157	191	14.1280
UCUUUGCCGGAGCUGCAGUCGCGCUGGGGUUAGG	chr3:160283039-160283345(-)$1	306	58	92	13.4312
UGUGCCGGCCGUGAGCUGCGGCAGGACGGCUGGA	chr6:692848-693199(-)$1	351	146	180	13.3885
GCGCCGCCAGCAGGCCAGGCGGACUGGGCGGGGC	chr12:121647838-121648117(+)$1	279	38	72	12.1042
GGCCGGCAGCAGUUACUCGGGGUUUCCGGUGCGA	chr1:32645243-32645489(+)$1	246	62	96	13.1205
UGUCCUCCGUCACCCGUACCCGGGCCCGGACCAG	chr7:155437292-155437518(+)$1	226	184	218	12.1669
GGGAUAGGGACUGUUGUGUUCGAAUGCCCGCCCC	chr19:58193360-58193655(+)$1	295	148	182	15.7966
CGCCGCCGCCGCCGCCGACUCGGCCGGUGGCGGU	chr9:5629111-5629402(+)$1	291	87	121	13.5518
CGCCCACUAGGUGGCGCCUGCGCUCUAGUGGGCG	chr16:53088852-53089238(+)$1	386	17	51	13.9635
CGAGCGAGGGGGACGGGGAGCCGGGGCGCCAGAG	chr15:52971357-52971660(-)$1	303	113	147	14.6678
UAGCGCGUGAGGAGGCAGAGGCCUCUGGGGUGGG	chr16:88729221-88729613(-)$1	392	41	75	11.5773
AGCGGAGUGAGUGACUAGAUGGUGACUGAUGUCG	chr3:169899375-169899625(-)$1	250	130	164	13.0969
GAAGUGCGCGCCUGGGGCCGCCUUGGUUACCGCG	chr6:31926564-31926839(-)$1	275	39	73	13.6957
GCCCCGCCUCCCUACGCGUAGCGCGGGGCGGGGC	chr1:92764324-92764636(-)$1	312	57	91	12.8223
gggcggagccgggccgggcgcggggcggcgaggc	chr9:126692065-126692384(-)$1	319	234	268	14.7961
cggcggcgguggcggcgaaggccgaggcggugag	chr19:39833020-39833316(+)$1	296	167	201	11.7106
GAGUUGUGGUCCGGCCACCCGCGCGGGACUCCAG	chr1:1551170-1551474(+)$1	304	32	66	12.3454
CCCGGCCUCUCGCUGAAUAUUCAUGAGGGAGGCG	chr19:45873614-45873904(-)$1	290	40	74	13.9054
CCCUGUGGUGGCUUAUUACUGUGAGUCUUUCCGA	chr6:142468300-142468581(+)$1	281	216	250	11.7055
UCAAGGUUGGCUCGGAGGUUUCACUGUUAGCCGG	chr19:58740195-58740414(+)$1	219	132	166	15.0518
UUCCGGGUCGGGGGGCAGGAGCCACCAUCGAGCU	chr14:75593522-75593843(-)$1	321	69	103	11.8316
gccggggaccgggggUGCGGGCUGACGCGGAAUA	chr6:5260790-5261074(-)$1	284	236	270	15.7786
GGAACUGGGAGCGCGCCGCGGCGGUUCCUGUCCU	chr9:86595555-86595937(+)$1	382	162	196	13.0937
ACCAGUUCUGGUACCUGGAGGGGGAAUGGAAUUU	chr20:30310175-30310451(-)$1	276	222	256	13.2612
GCGCAACAGGUCAGGGCUAGGCUGGGGCCGGGUU	chr1:153930909-153931182(-)$1	273	65	99	11.2679

#DB
...(((((((...(((....))).))))))))))	chr2:153191667-153191973(+)$1	1	17	51	15.8354
(.((..((.(((.(((....))).))).))..))	chr16:75018827-75019090(-)$1	1	181	215	13.3221
..(((((((..(.(((....)))..)..))))))	chr17:49337131-49337514(-)$1	1	210	244	16.4434
.(((((((((((.(((....))).))))))).))	chr2:153032077-153032375(-)$1	1	57	91	15.1740
((((((((....((((....))))...)).))))	chr4:1341011-1341268(+)$1	1	74	108	11.7155
))))((((((((.(((....))).)))))..)))	chr17:42148183-42148474(+)$1	1	225	259	13.3734
((((((.((..((.((....)).))...)).)))	chr1:153895287-153895540(-)$1	1	122	156	12.3321
.(((((.(((((.(((....)))))))).)....	chrX:23801271-23801517(+)$1	1	69	103	13.5514
..((((.(((((..(((...)))..)))))..))	chr7:77166753-77167016(+)$1	1	158	192	11.7994
)))((((((((((.((....)).)))))))))))	chr8:146078188-146078498(-)$1	1	41	75	13.3050
(.((((((((((.(((....))).))))))..))	chr10:103454730-103455039(-)$1	1	192	226	13.8198
(((((((((....(((...)))....)))).)))	chr1:161015543-161015825(-)$1	1	53	87	12.3296
((((((((((.(((((....))).))..).))))	chr2:170683908-170684203(+)$1	1	220	254	14.0373
...(((((((..((((....)))).)))))))..	chr11:9335956-9336258(-)$1	1	28	62	12.6388
..((((((.((..(((....)))..).).)))))	chr3:44596607-44596904(+)$1	1	126	160	13.6518
.((((((((....(((....))))))).))))..	chr17:7124199-7124478(+)$1	1	158	192	13.5329
...((((((.(..(((....)))..).)))))))	chr20:37590896-37591153(+)$1	1	181	215	15.7503
((((((((((.(.(((....)))..).)))))).	chr2:48541745-48542002(+)$1	1	217	251	15.1137
.(((((((..((.(((....)))))..)))))))	chr2:170550880-170551213(+)$1	1	17	51	14.6088
((((((((((.(((((....)).))).))).)))	chr17:45898966-45899278(-)$1	1	209	243	11.9941
((((((.(((....((....))))).)))).)).	chr19:13842484-13842798(+)$1	1	3	37	12.1832
.((((((.(.((.(((....))).))).))))))	chr5:154238056-154238451(+)$1	1	180	214	12.9794
((((..((((((((((....))))))))))..))	chr3:38178319-38178688(-)$1	1	22	56	13.8114
.(.(.(((((.(((.(....).))).))))).).	chr7:44887528-44887780(-)$1	1	153	187	11.6049
((..((((((...(((....)))....)))))).	chr19:45147083-45147441(+)$1	1	175	209	15.2755
....((((((..((((....)))).))))))..)	chr11:70049322-70049692(+)$1	1	96	130	11.8504
((((.(((((....((....))..))))).))))	chr2:61764992-61765250(-)$1	1	181	215	12.4842
.((((((.(((..(((....)))))).)))))))	chr11:73471960-73472221(-)$1	1	45	79	14.4877
(((((..((.((.(((....))))))).))))))	chr6:24403074-24403370(+)$1	1	42	76	14.0327
((((.(((((((.(((...)))))))))).))))	chr22:38902118-38902413(-)$1	1	129	163	11.9468
(((((((.(.(.(.((....)).).)).))))))	chr12:54069709-54069961(-)$1	1	157	191	14.1280
((((.(((..(((.((....)))))..))).)))	chr3:160283039-160283345(-)$1	1	58	92	13.4312
((((((((((((..((....))...))))))...	chr6:692848-693199(-)$1	1	146	180	13.3885
((.(((((..(((.((....)).)))))))).))	chr12:121647838-121648117(+)$1	1	38	72	12.1042
((((.(((.(.(..(((...)))..).).)))..	chr1:32645243-32645489(+)$1	1	62	96	13.1205
((((.((((...((((....))))..))))...)	chr7:155437292-155437518(+)$1	1	184	218	12.1669
(((...(((.(..(((....)))..)))).))).	chr19:58193360-58193655(+)$1	1	148	182	15.7966
(((.(((((((((((((...))).))))))))))	chr9:5629111-5629402(+)$1	1	87	121	13.5518
((((((((((..((((....))))))))))))))	chr16:53088852-53089238(+)$1	1	17	51	13.9635
(.(((..((.(..(((....)))...).))...)	chr15:52971357-52971660(-)$1	1	113	147	14.6678
(..(((.(..((((((....)))))).).)))..	chr16:88729221-88729613(-)$1	1	41	75	11.5773
.((((.((.(((.(((....))).))).)).)))	chr3:169899375-169899625(-)$1	1	130	164	13.0969
((((.(((((((.(((....))).))....))))	chr6:31926564-31926839(-)$1	1	39	73	13.6957
((((((((.((...(((...))).))))))))))	chr1:92764324-92764636(-)$1	1	57	91	12.8223
.(((...((((..(((....)))..))))...))	chr9:126692065-126692384(-)$1	1	234	268	14.7961
...((.((.(..((((....)))).).)).))..	chr19:39833020-39833316(+)$1	1	167	201	11.7106
((((((.(((((.(((....).)).))))).)))	chr1:1551170-1551474(+)$1	1	32	66	12.3454
((((.((((((.((((....))).).))))))))	chr19:45873614-45873904(-)$1	1	40	74	13.9054
((((.(((.(((((((....)))))))...))))	chr6:142468300-142468581(+)$1	1	216	250	11.7055
((..(((((((...((....))...)))))))))	chr19:58740195-58740414(+)$1	1	132	166	15.0518
)))))).(((((((((....))).)).))))(((	chr14:75593522-75593843(-)$1	1	69	103	11.8316
.((((((((((.((((....)))..).)))....	chr6:5260790-5261074(-)$1	1	236	270	15.7786
(((...((((((.(((....))))))))).))))	chr9:86595555-86595937(+)$1	1	162	196	13.0937
.))(((((((...(((....)))...))))))).	chr20:30310175-30310451(-)$1	1	222	256	13.2612
(((.(((.((((..(((...)))..))))..)))	chr1:153930909-153931182(-)$1	1	65	99	11.2679

#PSSM
d : 0.18	g : 0.12	[ : 0.07	f : 0.07	c : 0.07	: : 0.07	# : 0.05	! : 0.05	" : 0.05	e : 0.05	= : 0.05	b : 0.03	i : 0.03	$ : 0.01	F : 0.01	} : 0.01	
d : 0.23	g : 0.14	f : 0.10	c : 0.07	# : 0.05	e : 0.05	= : 0.05	[ : 0.03	! : 0.03	" : 0.03	: : 0.03	b : 0.03	i : 0.03	$ : 0.01	a : 0.01	B : 0.01	
d : 0.29	g : 0.16	f : 0.12	# : 0.05	! : 0.05	= : 0.05	c : 0.05	b : 0.03	e : 0.03	[ : 0.03	i : 0.03	$ : 0.01	" : 0.01	B : 0.01	
d : 0.25	g : 0.21	f : 0.14	= : 0.07	b : 0.05	c : 0.05	! : 0.03	" : 0.03	[ : 0.03	i : 0.03	a : 0.01	# : 0.01	e : 0.01	
g : 0.20	d : 0.16	[ : 0.16	f : 0.14	= : 0.09	c : 0.07	" : 0.05	! : 0.03	i : 0.03	e : 0.01	b : 0.01	
g : 0.21	f : 0.16	d : 0.14	c : 0.10	! : 0.07	= : 0.07	e : 0.07	" : 0.05	[ : 0.03	i : 0.03	a : 0.01	
g : 0.20	f : 0.20	c : 0.10	[ : 0.10	b : 0.07	= : 0.07	d : 0.07	e : 0.07	! : 0.03	i : 0.01	" : 0.01	: : 0.01	
g : 0.18	f : 0.16	e : 0.14	b : 0.12	c : 0.10	d : 0.09	= : 0.07	[ : 0.07	a : 0.01	i : 0.01	
g : 0.14	f : 0.14	[ : 0.12	e : 0.12	d : 0.10	c : 0.09	= : 0.07	! : 0.07	b : 0.05	a : 0.03	# : 0.01	
g : 0.12	e : 0.12	f : 0.12	c : 0.10	! : 0.10	[ : 0.10	= : 0.07	a : 0.07	# : 0.05	d : 0.05	" : 0.01	b : 0.01	
c : 0.10	! : 0.10	# : 0.09	f : 0.09	[ : 0.09	a : 0.09	b : 0.09	" : 0.07	g : 0.07	e : 0.07	= : 0.05	d : 0.05	
! : 0.18	b : 0.12	" : 0.10	c : 0.10	# : 0.09	e : 0.07	f : 0.07	a : 0.05	g : 0.05	= : 0.05	[ : 0.05	d : 0.01	
[ : 0.27	! : 0.18	d : 0.10	" : 0.09	# : 0.07	c : 0.07	b : 0.05	= : 0.05	a : 0.05	f : 0.01	g : 0.01	
c : 0.56	d : 0.10	[ : 0.09	! : 0.07	# : 0.03	= : 0.03	" : 0.03	f : 0.01	b : 0.01	g : 0.01	
c : 0.61	b : 0.20	d : 0.10	= : 0.01	[ : 0.01	f : 0.01	g : 0.01	
c : 0.61	b : 0.18	d : 0.10	a : 0.03	= : 0.01	f : 0.01	g : 0.01	
m : 0.87	c : 0.09	l : 0.03	
m : 0.87	l : 0.12	
m : 0.87	l : 0.12	
m : 0.87	l : 0.09	c : 0.03	
c : 0.61	b : 0.18	d : 0.10	a : 0.03	= : 0.01	f : 0.01	g : 0.01	
c : 0.61	b : 0.18	d : 0.10	] : 0.03	= : 0.01	f : 0.01	g : 0.01	
c : 0.63	d : 0.10	] : 0.09	g : 0.03	3 : 0.03	4 : 0.01	= : 0.01	2 : 0.01	f : 0.01	b : 0.01	
] : 0.23	2 : 0.20	d : 0.12	c : 0.10	b : 0.07	3 : 0.07	= : 0.03	4 : 0.03	g : 0.03	f : 0.03	e : 0.01	a : 0.01	
2 : 0.20	c : 0.14	b : 0.14	3 : 0.09	] : 0.09	g : 0.07	= : 0.07	e : 0.05	f : 0.05	4 : 0.03	d : 0.01	a : 0.01	
a : 0.16	g : 0.10	b : 0.10	c : 0.09	e : 0.09	f : 0.09	3 : 0.07	= : 0.07	d : 0.05	2 : 0.05	] : 0.05	4 : 0.03	
] : 0.18	g : 0.12	e : 0.12	d : 0.10	f : 0.09	2 : 0.07	= : 0.07	c : 0.05	a : 0.05	3 : 0.03	4 : 0.03	b : 0.01	i : 0.01	
f : 0.16	g : 0.12	] : 0.12	e : 0.12	d : 0.10	= : 0.07	c : 0.07	a : 0.05	2 : 0.03	b : 0.03	3 : 0.03	4 : 0.01	i : 0.01	
f : 0.18	g : 0.16	d : 0.12	b : 0.10	e : 0.10	= : 0.09	] : 0.07	c : 0.07	a : 0.01	4 : 0.01	i : 0.01	3 : 0.01	
f : 0.18	g : 0.14	] : 0.12	= : 0.09	d : 0.09	c : 0.09	b : 0.07	e : 0.07	2 : 0.03	3 : 0.03	a : 0.01	4 : 0.01	i : 0.01	
g : 0.16	f : 0.16	] : 0.12	2 : 0.10	d : 0.09	= : 0.07	e : 0.07	c : 0.07	3 : 0.05	4 : 0.03	i : 0.01	b : 0.01	
g : 0.18	c : 0.12	f : 0.12	d : 0.10	2 : 0.09	= : 0.09	3 : 0.07	e : 0.05	] : 0.05	4 : 0.03	b : 0.03	i : 0.01	
d : 0.16	g : 0.14	c : 0.14	f : 0.12	= : 0.09	3 : 0.09	2 : 0.07	e : 0.05	b : 0.03	4 : 0.03	a : 0.01	i : 0.01	
d : 0.20	g : 0.12	c : 0.12	2 : 0.09	= : 0.07	e : 0.05	b : 0.05	f : 0.05	3 : 0.05	] : 0.05	4 : 0.03	D : 0.01	a : 0.01	i : 0.01	: : 0.01	

#score	737.2465684557055
#seq	55
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_transcript_m2_run1.txt

#BEAR
ffffgggggggccc[dddd!!ccc[iiiiiiiii!!a[f	chr6:74228884-74229132(-)$1	248	115	154	9.4528
ffff!!ccc!!ccc[ccc[aooooooa]ccc]ccc]ccc	chr2:232321166-232321413(-)$1	247	58	97	14.3431
]ccc]cccgggggggddddoooooodddd]ggggggg::	chr11:988635-988926(+)$1	291	164	203	12.3548
ggggggg!!ccc"""ddddoooooodddd]ccc22gggg	chr22:20112891-20113134(+)$1	243	68	107	16.6257
eeeee[==========!!bbmmmmbb22==========]	chr1:47747842-47748089(-)$1	247	189	228	13.7701
!!ggggggg[ccc####bboooooobb4444ccc]gggg	chr22:19467473-19467727(+)$1	254	135	174	16.7782
ccc:iiiiiiiii!!eeeeellleeeee22iiiiiiiii	chr16:70566444-70566726(+)$1	282	126	165	13.5042
$$$$$dddd[bb####cccooooooccc333bb]dddd6	chr14:102375949-102376221(+)$1	272	205	244	13.3938
::==========[cccrrrrrrrrrccc333========	chr17:57741276-57741532(+)$1	256	76	115	13.9947
bb[iiiiiiiii!!cccqqqqqqqqccc333iiiiiiii	chr6:136590383-136590645(-)$1	262	211	250	13.0354
ccc$$$$$eeeee[a[cccooooooccc]a]eeeee333	chr2:32439424-32439631(-)$1	207	45	84	13.7966
===========!!azzzzzzzzzzzzzzzzza22=====	chr11:47767426-47767678(-)$1	252	194	233	12.2056
ccc$$$$$bb[bb"""cccnnnnnccc4444bb]bb333	chr8:57829614-57829851(+)$1	237	73	112	13.5495
cc[==========!!ddddoooooodddd22========	chr5:10410325-10410584(+)$1	259	105	144	18.5173
bbccc[ccc[bb"""ddddnnnnndddd333bb]ccc]c	chr1:26799949-26800198(+)$1	249	110	149	14.7215
ccc$$$$$eeeee"""cccnnnnnccc4444eeeee333	chr1:27651687-27651924(+)$1	237	67	106	13.7158
!eeeee!!dddd[cccddddnnnnndddd]ccc]dddd4	chr22:22142349-22142617(-)$1	268	103	142	11.5134
ggggggccc$$$$$eeeeeooooooeeeee4444ccc]g	chr19:49469181-49469411(+)$1	230	33	72	14.1718
##dddd####ccc[bbddddnnnnndddd]bb333cccd	chr1:23403804-23404083(+)$1	279	7	46	12.3662
d[ccc$$$$$ccc!!ddddmmmmdddd22ccc4444ccc	chr6:160491026-160491276(+)$1	250	53	92	12.7547
fffff:==========[bboooooobb22==========	chr12:110760801-110761050(+)$1	249	202	241	16.2935
dddddcccccc####ddddoooooodddd]ccc]ccc22	chr5:43293979-43294228(-)$1	249	45	84	14.8903
]ccc]bb==============mmmm==============	chr6:33371832-33372099(+)$1	267	175	214	13.9513
[ccc!!==========rrrrrrrrr==========]ccc	chrX:151139437-151139690(-)$1	253	193	232	14.7774
ffff==========[ddddoooooodddd==========	chr8:124356938-124357193(-)$1	255	211	250	17.9099
hhhhhhhh!!dddd[ddddoooooodddd22dddd]hhh	chr16:46729924-46730183(+)$1	259	89	128	11.8573
2ddddiiiiiiiii####bbnnnnnbbiiiiiiiii:cc	chr14:103934448-103934707(+)$1	259	27	66	12.5456
c[eeeee[ffffff!!cccooooooccc22ffffff]ee	chr7:26236248-26236497(-)$1	249	59	98	12.6341
fffff"""ccc"""eeeeellleeeee333cccffffff	chr16:29811301-29811557(+)$1	256	101	140	11.9241
gggggggeeeee$$$$$bboooooobb4444eeeee333	chr1:201824976-201825286(+)$1	310	51	90	14.4759
d[adddd[iiiiiiiii!!annnnna22iiiiiiiii]d	chr21:47632709-47633010(-)$1	301	180	219	13.5421
iiii%%%%%%ccc"""ddddlllddddccciiiiiiiii	chr1:15964857-15965109(+)$1	252	103	142	11.6662
eee]cccdddd"""eeeeeooooooeeeee333ddddii	chr12:54676012-54676257(+)$1	245	119	158	12.9645
d!!ccc####ccc!!ddddnnnnndddd]ccc4444ccc	chr22:22029337-22029619(+)$1	282	56	95	14.9955
f[ccc[dddd!!bb[ddddnnnnndddd]bb]ddddccc	chr3:45754602-45754883(+)$1	281	22	61	11.4548
hh[ccc####dddd!!cccmmmmccc]dddd4444ccc2	chr10:74034100-74034346(+)$1	246	22	61	11.6479
ffffccc!!dddd"""cccooooooccc]dddd22ccc]	chr11:62622194-62622424(-)$1	230	113	152	14.6532
g===========####cccpppppppccc333=======	chr14:70235894-70236146(+)$1	252	147	186	14.5932
ggggggg"""iiiiiiiiillliiiiiiiii333ggggg	chr2:61709368-61709585(-)$1	217	130	169	14.3276
ccc[ccc[ccc!!ccc[bbnnnnnbb22ccc]ccc]ccc	chrX:44913126-44913399(+)$1	273	41	80	12.9242
iiiiiiiii$$$$$a!!bboooooobb22a22iiiiiii	chr21:44520283-44520570(-)$1	287	8	47	16.4138
fff!!eeeee[============mmmm============	chr1:67885462-67885760(-)$1	298	73	112	11.3617
ccc[ccc"""bb####ddddmmmmdddd333bb]ccc22	chr19:11230842-11231108(+)$1	266	221	260	14.0889
:a[iiiiiiiiia[cccooooooccc]a]iiiiiiiii]	chr22:20907403-20907657(+)$1	254	1	40	14.1880
::::==========!!arrrrrrrrra22==========	chr1:55586916-55587177(-)$1	261	84	123	12.2639
ggggggg####ccc[ddddmmmmdddd]ccc4444gggg	chr6:99852285-99852551(-)$1	266	60	99	13.4126
ggggggg!!ccc####ccclllccc333ccc22gggggg	chr8:67579853-67580143(+)$1	290	160	199	14.3024
========="""eeeee[bbnnnnnbbeeeee=======	chr10:76982092-76982348(+)$1	256	57	96	13.5577
iiiiiiiii!!ccc"""bboooooobb22ccc22iiiii	chr1:39920699-39920953(+)$1	254	61	100	16.9056
{CCC==========####annnnna4444==========	chr7:129110484-129110761(+)$1	277	7	46	13.3157
fff============"""bbnnnnnbb333=========	chr12:62785594-62785845(+)$1	251	206	245	17.0499
:eeeeeccc####ccc[bboooooobb]ccc4444ccc]	chr22:19504342-19504597(+)$1	255	129	168	13.7908

#otherMatches

#Seq PSSM
CUUGCUUUGUACACUGGUUUUGUCAUUUGGAGAGUUGAC	chr6:74228884-74229132(-)$1	248	115	154	9.4528
UAAUGCCAGAAGCCGUAAGUUCACCUGGUUAGGGUGCUG	chr2:232321166-232321413(-)$1	247	58	97	14.3431
GAGAUGCUGAAUACAAGGCUCCUCUGCCUCUGUGUUUUC	chr11:988635-988926(+)$1	291	164	203	12.3548
GUGAGCCAAGGGCCCUGGGGACCUGCCUGACUUGGGGCU	chr22:20112891-20113134(+)$1	243	68	107	16.6257
uauuucuaucucuaugguuauaucuauauauagagauau	chr1:47747842-47748089(-)$1	247	189	228	13.7701
UGGGUGACCGGGAGGCAGGGGAGGGCCGGGGUUCGGGUC	chr22:19467473-19467727(+)$1	254	135	174	16.7782
UAUGCCCAAACCUAAUAGGUUUUACUUAAAGGGUUUGGG	chr16:70566444-70566726(+)$1	282	126	165	13.5042
GAAAGCAAAUUAAAACUGUGUUAUAAUAACGUAUUUUGA	chr14:102375949-102376221(+)$1	272	205	244	13.3938
AAAGUGAGUUCAAUGAAACACAUUCUCAGCAUGAAUUCA	chr17:57741276-57741532(+)$1	256	76	115	13.9947
GUAUUUGUCUUUUACACGGCUUAUGGUGGAUGAGGACAA	chr6:136590383-136590645(-)$1	262	211	250	13.0354
gaagauuaguauggccucugugcaaagaugacaugcaaa	chr2:32439424-32439631(-)$1	207	45	84	13.7966
GAAGCUUAUGCAGCAAAAACUUUAAACUACAGAGGUGUA	chr11:47767426-47767678(-)$1	252	194	233	12.2056
gaagauuagcauggccccugugcaaggaugacacgcaaa	chr8:57829614-57829851(+)$1	237	73	112	13.5495
UGACUAUGGAAUAACCUUUCUGGAAAAAGUAUGUUCCAU	chr5:10410325-10410584(+)$1	259	105	144	18.5173
AGAGGCCACUGGACUCGGUGAUUAACCGUAACCUGUGUC	chr1:26799949-26800198(+)$1	249	110	149	14.7215
gaagauuagcauggccccugcgcaaggaugacaugcaga	chr1:27651687-27651924(+)$1	237	67	106	13.7158
UAGGCUUAGCUUCGCGUUUAUUUGUUAAAUUGUUAGGUC	chr22:22142349-22142617(-)$1	268	103	142	11.5134
CGUGCGCGCGAGGAGCCUUGAUUUGAGGGCGUAGGUGUC	chr19:49469181-49469411(+)$1	230	33	72	14.1718
AACUGAAUACAGCAGUGCGACAGGUUCGCUACACGGCUU	chr1:23403804-23404083(+)$1	279	7	46	12.3662
AGAGCCAAGUGGUAAGGGACUGUUCCUGCACCUUCUGCU	chr6:160491026-160491276(+)$1	250	53	92	12.7547
CUUAGUGCUUUagucucgcuccauugcccaggcuggagu	chr12:110760801-110761050(+)$1	249	202	241	16.2935
UAAAGUCACACAAGAUGCUACACCGGGUAAGUGCUGAAU	chr5:43293979-43294228(-)$1	249	45	84	14.8903
GAGCACCUAUCUUUAGCAGUAUAGGUGCUGCUGAAGAUA	chr6:33371832-33372099(+)$1	267	175	214	13.9513
UCCUGUUGGGCAGCCAGUUCCUGGAUGGCUGUCUGUGGG	chrX:151139437-151139690(-)$1	253	193	232	14.7774
UUUGGUAUAUGUGCUCAUUGGGCAAGAUGguauauguau	chr8:124356938-124357193(-)$1	255	211	250	17.9099
CGGUACUGACGUUGACAUUUUAUGCAGUGAACAGCCCAG	chr16:46729924-46730183(+)$1	259	89	128	11.8573
AGAGAAGUGUUUUUUCAAGCCAAAAGCAAAGACGCUACA	chr14:103934448-103934707(+)$1	259	27	66	12.5456
AUAAAAUCGUAUGUAAGUGUCUAACCACAAAUGUACUGU	chr7:26236248-26236497(-)$1	249	59	98	12.6341
UGAUGUAUGGCUUAGCAGCAGAGCUGCAAUGCCCGUCAG	chr16:29811301-29811557(+)$1	256	101	140	11.9241
AUAUUAUCCUGUACAUGCAAAUCACUGAGGAGCAGGUAA	chr1:201824976-201825286(+)$1	310	51	90	14.4759
GCGUGCGACUAGAGGCUGAGUCAGUUGAGGCCUCUGGCC	chr21:47632709-47633010(-)$1	301	180	219	13.5421
CCCUCCAACAUCUUUACCUGACACGGGAGAAGGGGAGGC	chr1:15964857-15965109(+)$1	252	103	142	11.6662
GCAUUCUAAACCCUGAUACCAUGUUGUAUCUAUGUUUUU	chr12:54676012-54676257(+)$1	245	119	158	12.9645
GAACAGUGAGGGUGAGUGGAACUAUCACAGCCAAUUCUG	chr22:22029337-22029619(+)$1	282	56	95	14.9955
UCAGGCAGAUCAGCGGUUUGUAUGGAAUGGUCAUCUUCU	chr3:45754602-45754883(+)$1	281	22	61	11.4548
AGAGCUCGGACUGCGAGUCCCUGGACAGCAGCAACAGUG	chr10:74034100-74034346(+)$1	246	22	61	11.6479
CAAGUGGCCGGCGGAACAAUGUUUUUUGGCGCCUUCCAU	chr11:62622194-62622424(-)$1	230	113	152	14.6532
UGUUUUAUUAAAAGUAGUUUUAAAUUAAUGGAUUUAAUG	chr14:70235894-70236146(+)$1	252	147	186	14.5932
guaaucccagcacuuugggaagccuaaggugggaggauu	chr2:61709368-61709585(-)$1	217	130	169	14.3276
UAAUUCUGGCCAGUCCUGGUAUUUCCUCGGAAGGUGAGA	chrX:44913126-44913399(+)$1	273	41	80	12.9242
GUAAGUUCAUACAAGUUCCUUCCCCGGUUCCCUGGGCUU	chr21:44520283-44520570(-)$1	287	8	47	16.4138
AAUUAAGUUUUGUCGUGUUUGAAAAUGUUCAGAUGUGAC	chr1:67885462-67885760(-)$1	298	73	112	11.3617
GGACCACCCUGAGCAAUGGCGGCUGCCAGUAUCUGUGCC	chr19:11230842-11231108(+)$1	266	221	260	14.0889
CGUUUUUUUGUUUGUGUUUUCAUAUAGAUAACAAGAAAU	chr22:20907403-20907657(+)$1	254	1	40	14.1880
AUUACUUACAAAACUCCUUUGGUCCUGUUGUUUUGUGAG	chr1:55586916-55587177(-)$1	261	84	123	12.2639
AAAGCAACGAAAGGUAUAUUUUGGUGUUUCUGGUUUUGC	chr6:99852285-99852551(-)$1	266	60	99	13.4126
GGGGGAAAACAGUUGAUUCUCGGAAGCUCUGCCUUCUCC	chr8:67579853-67580143(+)$1	290	160	199	14.3024
CUUCCAUUUCUGUGAGUACUUUUGUGGACUUAGAAUGGG	chr10:76982092-76982348(+)$1	256	57	96	13.5577
GAGCAUCAGGUAUCUUAACCUCACUGUGUGAUCACUGGU	chr1:39920699-39920953(+)$1	254	61	100	16.9056
UCUCAGUCCUGGAUUAUCCUUGCUGUACCAUCCAGGAUU	chr7:129110484-129110761(+)$1	277	7	46	13.3157
AACUAGAAAAAAAAGUCUUUGCAAAAAUACCUUUUUUUU	chr12:62785594-62785845(+)$1	251	206	245	17.0499
GCAGGCCCUGGAACCAAGCAAGUUGGCAUGGCUGGAGGA	chr22:19504342-19504597(+)$1	255	129	168	13.7908

#DB
)))))))))))(((.((((..(((.(((((((((..(.(	chr6:74228884-74229132(-)$1	1	115	154	9.4528
((((..(((..(((.(((.(......).))).))).)))	chr2:232321166-232321413(-)$1	1	58	97	14.3431
.))).)))(((((((((((......)))).)))))))..	chr11:988635-988926(+)$1	1	164	203	12.3548
(((((((..(((...((((......)))).)))..))))	chr22:20112891-20113134(+)$1	1	68	107	16.6257
(((((.((((((((((..((....))..)))))))))).	chr1:47747842-47748089(-)$1	1	189	228	13.7701
..(((((((.(((....((......))....))).))))	chr22:19467473-19467727(+)$1	1	135	174	16.7782
))).(((((((((..(((((...)))))..)))))))))	chr16:70566444-70566726(+)$1	1	126	165	13.5042
.....((((.((....(((......)))...)).)))).	chr14:102375949-102376221(+)$1	1	205	244	13.3938
..((((((((((.(((.........)))...))))))))	chr17:57741276-57741532(+)$1	1	76	115	13.9947
((.(((((((((..(((........)))...))))))))	chr6:136590383-136590645(-)$1	1	211	250	13.0354
(((.....(((((.(.(((......))).).)))))...	chr2:32439424-32439631(-)$1	1	45	84	13.7966
(((((((((((..(.................)..)))))	chr11:47767426-47767678(-)$1	1	194	233	12.2056
(((.....((.((...(((.....)))....)).))...	chr8:57829614-57829851(+)$1	1	73	112	13.5495
((.((((((((((..((((......))))..))))))))	chr5:10410325-10410584(+)$1	1	105	144	18.5173
))(((.(((.((...((((.....))))...)).))).)	chr1:26799949-26800198(+)$1	1	110	149	14.7215
(((.....(((((...(((.....)))....)))))...	chr1:27651687-27651924(+)$1	1	67	106	13.7158
.(((((..((((.(((((((.....)))).))).)))).	chr22:22142349-22142617(-)$1	1	103	142	11.5134
(((((((((.....(((((......)))))....))).)	chr19:49469181-49469411(+)$1	1	33	72	14.1718
..((((....(((.((((((.....)))).))...))))	chr1:23403804-23404083(+)$1	1	7	46	12.3662
(.(((.....(((..((((....))))..)))....)))	chr6:160491026-160491276(+)$1	1	53	92	12.7547
))))).((((((((((.((......))..))))))))))	chr12:110760801-110761050(+)$1	1	202	241	16.2935
(((((((((((....((((......)))).))).)))..	chr5:43293979-43294228(-)$1	1	45	84	14.8903
.))).))((((((((((((((....))))))))))))))	chr6:33371832-33372099(+)$1	1	175	214	13.9513
.(((..((((((((((.........)))))))))).)))	chrX:151139437-151139690(-)$1	1	193	232	14.7774
))))((((((((((.((((......))))))))))))))	chr8:124356938-124357193(-)$1	1	211	250	17.9099
((((((((..((((.((((......))))..)))).)))	chr16:46729924-46730183(+)$1	1	89	128	11.8573
.))))(((((((((....((.....))))))))))).((	chr14:103934448-103934707(+)$1	1	27	66	12.5456
(.(((((.((((((..(((......)))..)))))).))	chr7:26236248-26236497(-)$1	1	59	98	12.6341
(((((...(((...(((((...)))))...)))))))))	chr16:29811301-29811557(+)$1	1	101	140	11.9241
((((((((((((.....((......))....)))))...	chr1:201824976-201825286(+)$1	1	51	90	14.4759
(.(((((.(((((((((..(.....)..))))))))).)	chr21:47632709-47633010(-)$1	1	180	219	13.5421
((((......(((...((((...))))))))))))))))	chr1:15964857-15965109(+)$1	1	103	142	11.6662
))).)))((((...(((((......)))))...))))((	chr12:54676012-54676257(+)$1	1	119	158	12.9645
(..(((....(((..((((.....)))).)))....)))	chr22:22029337-22029619(+)$1	1	56	95	14.9955
(.(((.((((..((.((((.....)))).)).)))))))	chr3:45754602-45754883(+)$1	1	22	61	11.4548
((.(((....((((..(((....))).))))....))).	chr10:74034100-74034346(+)$1	1	22	61	11.6479
(((((((..((((...(((......))).))))..))).	chr11:62622194-62622424(-)$1	1	113	152	14.6532
)(((((((((((....(((.......)))...)))))))	chr14:70235894-70236146(+)$1	1	147	186	14.5932
(((((((...(((((((((...)))))))))...)))))	chr2:61709368-61709585(-)$1	1	130	169	14.3276
(((.(((.(((..(((.((.....))..))).))).)))	chrX:44913126-44913399(+)$1	1	41	80	12.9242
(((((((((.....(..((......))..)..)))))))	chr21:44520283-44520570(-)$1	1	8	47	16.4138
(((..(((((.((((((((((((....))))))))))))	chr1:67885462-67885760(-)$1	1	73	112	11.3617
(((.(((...((....((((....))))...)).)))..	chr19:11230842-11231108(+)$1	1	221	260	14.0889
.(.((((((((((.(((......))).).))))))))).	chr22:20907403-20907657(+)$1	1	1	40	14.1880
....((((((((((..(.........)..))))))))))	chr1:55586916-55587177(-)$1	1	84	123	12.2639
(((((((....(((.((((....)))).)))....))))	chr6:99852285-99852551(-)$1	1	60	99	13.4126
(((((((..(((....(((...)))...)))..))))))	chr8:67579853-67580143(+)$1	1	160	199	14.3024
(((((((((...(((((.((.....))))))))))))))	chr10:76982092-76982348(+)$1	1	57	96	13.5577
(((((((((..(((...((......))..)))..)))))	chr1:39920699-39920953(+)$1	1	61	100	16.9056
.(((((((((((((....(.....)....))))))))))	chr7:129110484-129110761(+)$1	1	7	46	13.3157
)))((((((((((((...((.....))...)))))))))	chr12:62785594-62785845(+)$1	1	206	245	17.0499
.((((((((....(((.((......)).)))....))).	chr22:19504342-19504597(+)$1	1	129	168	13.7908

#PSSM
f : 0.17	c : 0.15	g : 0.13	: : 0.07	d : 0.07	i : 0.05	] : 0.03	e : 0.03	! : 0.03	b : 0.03	= : 0.03	h : 0.03	$ : 0.01	# : 0.01	[ : 0.01	2 : 0.01	{ : 0.01	
c : 0.19	f : 0.15	g : 0.11	e : 0.07	[ : 0.07	= : 0.05	i : 0.05	! : 0.03	: : 0.03	b : 0.03	d : 0.03	h : 0.03	$ : 0.01	# : 0.01	a : 0.01	C : 0.01	
c : 0.23	f : 0.15	g : 0.13	e : 0.09	= : 0.07	[ : 0.07	d : 0.05	i : 0.05	$ : 0.01	h : 0.01	a : 0.01	! : 0.01	: : 0.01	C : 0.01	
c : 0.15	g : 0.13	f : 0.11	= : 0.11	i : 0.09	e : 0.07	$ : 0.07	d : 0.07	: : 0.03	[ : 0.03	h : 0.01	] : 0.01	! : 0.01	C : 0.01	
= : 0.17	c : 0.17	g : 0.15	i : 0.09	e : 0.07	$ : 0.07	d : 0.07	! : 0.05	] : 0.03	f : 0.03	h : 0.01	% : 0.01	
= : 0.17	g : 0.15	c : 0.15	i : 0.11	$ : 0.07	e : 0.07	[ : 0.05	d : 0.05	! : 0.03	: : 0.01	b : 0.01	h : 0.01	" : 0.01	% : 0.01	
= : 0.23	c : 0.19	g : 0.13	i : 0.11	$ : 0.07	d : 0.05	# : 0.05	e : 0.03	! : 0.01	b : 0.01	h : 0.01	" : 0.01	% : 0.01	
= : 0.24	c : 0.11	i : 0.11	! : 0.07	$ : 0.07	# : 0.07	d : 0.05	[ : 0.05	" : 0.05	g : 0.03	e : 0.03	h : 0.01	% : 0.01	
= : 0.24	c : 0.13	i : 0.13	! : 0.07	d : 0.07	e : 0.07	# : 0.07	g : 0.05	" : 0.03	b : 0.01	$ : 0.01	f : 0.01	% : 0.01	
= : 0.23	c : 0.09	i : 0.09	# : 0.09	e : 0.07	d : 0.07	! : 0.05	[ : 0.05	$ : 0.05	" : 0.05	g : 0.03	b : 0.01	f : 0.01	% : 0.01	
= : 0.23	c : 0.19	i : 0.11	d : 0.09	! : 0.05	b : 0.05	e : 0.05	g : 0.03	[ : 0.03	$ : 0.03	# : 0.03	f : 0.01	" : 0.01	
= : 0.23	c : 0.21	i : 0.11	b : 0.07	d : 0.07	e : 0.05	! : 0.05	" : 0.05	$ : 0.03	# : 0.03	g : 0.01	f : 0.01	
= : 0.19	c : 0.17	# : 0.11	" : 0.07	i : 0.07	! : 0.05	e : 0.05	$ : 0.05	d : 0.05	[ : 0.03	b : 0.03	g : 0.01	f : 0.01	a : 0.01	
= : 0.17	c : 0.15	" : 0.15	# : 0.11	! : 0.09	[ : 0.05	$ : 0.05	i : 0.05	d : 0.03	g : 0.01	a : 0.01	f : 0.01	b : 0.01	e : 0.01	
# : 0.15	" : 0.13	! : 0.13	[ : 0.11	= : 0.11	c : 0.11	e : 0.07	a : 0.03	i : 0.03	g : 0.01	z : 0.01	b : 0.01	$ : 0.01	
d : 0.23	c : 0.13	# : 0.13	" : 0.11	= : 0.09	e : 0.09	! : 0.07	i : 0.03	[ : 0.01	z : 0.01	b : 0.01	$ : 0.01	
d : 0.30	c : 0.23	e : 0.09	# : 0.05	[ : 0.05	! : 0.03	r : 0.03	= : 0.03	i : 0.03	" : 0.03	z : 0.01	$ : 0.01	a : 0.01	
d : 0.30	c : 0.19	b : 0.13	e : 0.07	r : 0.05	! : 0.03	= : 0.03	# : 0.03	q : 0.01	z : 0.01	i : 0.01	o : 0.01	[ : 0.01	" : 0.01	
d : 0.30	b : 0.21	c : 0.17	e : 0.07	r : 0.05	= : 0.03	[ : 0.01	q : 0.01	z : 0.01	! : 0.01	i : 0.01	o : 0.01	a : 0.01	
o : 0.36	n : 0.13	b : 0.07	d : 0.07	r : 0.05	m : 0.05	l : 0.05	a : 0.03	= : 0.03	! : 0.01	e : 0.01	q : 0.01	z : 0.01	p : 0.01	
o : 0.38	n : 0.24	m : 0.09	l : 0.09	r : 0.05	= : 0.03	! : 0.01	q : 0.01	z : 0.01	p : 0.01	
o : 0.38	n : 0.24	m : 0.11	l : 0.09	r : 0.05	c : 0.01	q : 0.01	z : 0.01	p : 0.01	= : 0.01	
o : 0.38	n : 0.24	m : 0.11	r : 0.05	c : 0.03	l : 0.03	q : 0.01	z : 0.01	e : 0.01	p : 0.01	i : 0.01	= : 0.01	
o : 0.36	n : 0.24	c : 0.07	m : 0.07	r : 0.05	d : 0.05	e : 0.03	q : 0.01	z : 0.01	p : 0.01	i : 0.01	
o : 0.36	d : 0.13	n : 0.11	c : 0.09	r : 0.05	b : 0.03	e : 0.03	m : 0.03	[ : 0.01	q : 0.01	z : 0.01	p : 0.01	i : 0.01	a : 0.01	
d : 0.28	b : 0.21	c : 0.19	e : 0.07	i : 0.03	= : 0.03	o : 0.01	z : 0.01	a : 0.01	p : 0.01	m : 0.01	r : 0.01	3 : 0.01	4 : 0.01	
d : 0.28	b : 0.17	c : 0.17	e : 0.07	2 : 0.05	i : 0.03	a : 0.03	= : 0.03	] : 0.03	z : 0.01	m : 0.01	3 : 0.01	4 : 0.01	
d : 0.24	2 : 0.15	c : 0.15	4 : 0.09	e : 0.07	i : 0.05	] : 0.05	= : 0.05	3 : 0.05	z : 0.01	a : 0.01	
d : 0.17	c : 0.13	2 : 0.13	3 : 0.13	4 : 0.09	] : 0.09	i : 0.07	= : 0.07	e : 0.05	z : 0.01	
c : 0.17	= : 0.15	3 : 0.15	i : 0.09	] : 0.09	4 : 0.07	2 : 0.07	e : 0.05	a : 0.03	d : 0.03	z : 0.01	b : 0.01	
c : 0.23	= : 0.17	i : 0.13	3 : 0.13	4 : 0.09	2 : 0.05	b : 0.03	d : 0.03	g : 0.01	] : 0.01	z : 0.01	f : 0.01	e : 0.01	
= : 0.21	c : 0.15	i : 0.13	b : 0.09	e : 0.07	4 : 0.07	] : 0.05	3 : 0.05	d : 0.03	2 : 0.03	g : 0.01	a : 0.01	f : 0.01	
= : 0.24	i : 0.15	c : 0.13	4 : 0.11	b : 0.07	e : 0.05	2 : 0.05	3 : 0.05	d : 0.05	g : 0.01	f : 0.01	
= : 0.24	i : 0.15	] : 0.11	4 : 0.11	2 : 0.07	c : 0.05	e : 0.05	d : 0.05	g : 0.03	3 : 0.03	f : 0.03	
= : 0.26	i : 0.15	c : 0.11	d : 0.09	4 : 0.09	g : 0.05	e : 0.05	2 : 0.03	f : 0.03	! : 0.01	] : 0.01	b : 0.01	3 : 0.01	
= : 0.24	i : 0.15	c : 0.15	g : 0.11	] : 0.07	d : 0.07	e : 0.05	4 : 0.03	f : 0.03	! : 0.01	b : 0.01	
c : 0.26	= : 0.24	i : 0.13	g : 0.11	3 : 0.07	d : 0.05	a : 0.01	h : 0.01	: : 0.01	] : 0.01	f : 0.01	
= : 0.24	c : 0.21	i : 0.13	g : 0.09	3 : 0.07	] : 0.05	d : 0.03	2 : 0.03	[ : 0.01	: : 0.01	h : 0.01	e : 0.01	f : 0.01	
= : 0.23	c : 0.15	g : 0.11	i : 0.11	] : 0.07	3 : 0.07	2 : 0.05	f : 0.03	d : 0.03	: : 0.01	6 : 0.01	4 : 0.01	h : 0.01	e : 0.01	

#score	719.2473413771736
#seq	52
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_UTR_m1_run1.txt

#BEAR
eeccceeeee[assssssssssaeeeee	chr17:27047460-27047733(+)$1	273	182	210	23.0444
!ccc[eeeeewwwwwwwwwwwwwweeee	chrX:152953588-152953898(+)$1	310	204	232	27.5858
ffff[eeeeevvvvvvvvvvvvveeeee	chr11:62609020-62609227(-)$1	207	94	122	27.8462
[ddddfffffftttttttttttffffff	chr20:57466610-57466874(+)$1	264	174	202	23.4009
iiiiiieeeeeuuuuuuuuuuuueeeee	chr11:122929526-122929781(-)$1	255	30	58	27.7446

#otherMatches

#Seq PSSM
AGGGUGGCCCACUGCAGUUCUUGGGGCC	chr17:27047460-27047733(+)$1	273	182	210	23.0444
ACACAUGAGAUUCUUCAGGCUCACUUUC	chrX:152953588-152953898(+)$1	310	204	232	27.5858
aucgaccugguauugcaguacuuccagg	chr11:62609020-62609227(-)$1	207	94	122	27.8462
GGCUGCCUCGGGAACAGUAAGACCGAGG	chr20:57466610-57466874(+)$1	264	174	202	23.4009
UCUCUUGUUUGGCUUACUGAUAACAGAU	chr11:122929526-122929781(-)$1	255	30	58	27.7446

#DB
)))))(((((.(..........))))))	chr17:27047460-27047733(+)$1	1	182	210	23.0444
.(((.(((((..............))))	chrX:152953588-152953898(+)$1	1	204	232	27.5858
((((.(((((.............)))))	chr11:62609020-62609227(-)$1	1	94	122	27.8462
.((((((((((...........))))))	chr20:57466610-57466874(+)$1	1	174	202	23.4009
(((((((((((............)))))	chr11:122929526-122929781(-)$1	1	30	58	27.7446

#PSSM
e : 0.20	! : 0.20	f : 0.20	[ : 0.20	i : 0.20	
e : 0.20	c : 0.20	f : 0.20	d : 0.20	i : 0.20	
c : 0.40	f : 0.20	d : 0.20	i : 0.20	
c : 0.40	f : 0.20	d : 0.20	i : 0.20	
[ : 0.40	c : 0.20	d : 0.20	i : 0.20	
e : 0.60	f : 0.20	i : 0.20	
e : 0.80	f : 0.20	
e : 0.80	f : 0.20	
e : 0.80	f : 0.20	
e : 0.80	f : 0.20	
[ : 0.20	w : 0.20	v : 0.20	f : 0.20	e : 0.20	
a : 0.20	w : 0.20	v : 0.20	t : 0.20	u : 0.20	
s : 0.20	w : 0.20	v : 0.20	t : 0.20	u : 0.20	
s : 0.20	w : 0.20	v : 0.20	t : 0.20	u : 0.20	
s : 0.20	w : 0.20	v : 0.20	t : 0.20	u : 0.20	
s : 0.20	w : 0.20	v : 0.20	t : 0.20	u : 0.20	
s : 0.20	w : 0.20	v : 0.20	t : 0.20	u : 0.20	
s : 0.20	w : 0.20	v : 0.20	t : 0.20	u : 0.20	
s : 0.20	w : 0.20	v : 0.20	t : 0.20	u : 0.20	
s : 0.20	w : 0.20	v : 0.20	t : 0.20	u : 0.20	
s : 0.20	w : 0.20	v : 0.20	t : 0.20	u : 0.20	
s : 0.20	w : 0.20	v : 0.20	t : 0.20	u : 0.20	
a : 0.20	w : 0.20	v : 0.20	f : 0.20	u : 0.20	
e : 0.60	w : 0.20	f : 0.20	
e : 0.80	f : 0.20	
e : 0.80	f : 0.20	
e : 0.80	f : 0.20	
e : 0.80	f : 0.20	

#score	129.62202747089998
#seq	5
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_CDS_m3_run2.txt

#BEAR
eeeeeeeeee[a[aqqqqqqqqa]aeeeee333e	chr16:89043042-89043353(-)$1	311	129	163	12.5141
bbb!!ccc[ddddrrrrrrrrrddddccc22bb]	chr4:1993987-1994232(-)$1	245	202	236	12.0523
===!!bb[a[cccqqqqqqqqccca]bb22====	chr1:1155979-1156229(-)$1	250	157	191	13.9913
ee[a[a!!eeeeerrrrrrrrreeeee22a]a33	chr8:144672119-144672367(-)$1	248	184	218	12.4503
ggggggg[a####bbpppppppbb22a]gggggg	chr3:9851546-9851804(+)$1	258	2	36	11.2032
[ddddiiiiiiiiiqqqqqqqqiiiiiiiii]dd	chr4:78740326-78740613(-)$1	287	140	174	13.6945
[ccc[hhhhhhhhrrrrrrrrrhhhhhhhhccc]	chr12:116714153-116714407(-)$1	254	170	204	13.1046
c[a[ccc[eeeeeassssssssssa]eeeeeccc	chr4:1804658-1804922(+)$1	264	61	95	11.4290
a[bb[ccc[ccc!!bboooooobb22ccc]ccc]	chr9:80646047-80646324(-)$1	277	193	227	9.5270
beeeee[bb[cccrrrrrrrrrccc]bbeeeee]	chr4:1994032-1994281(-)$1	249	167	201	12.3796
:ccc[hhhhhhhhrrrrrrrrrhhhhhhhh]ccc	chr19:863083-863375(+)$1	292	38	72	11.7824
iiiibb!!ffffffqqqqqqqqffffff22bb]i	chr2:97533517-97533803(-)$1	286	187	221	11.5182
c!!==========ppppppp==========ccc]	chr19:55543390-55543684(+)$1	294	197	231	12.0120
ccceeeeebb[bbrrrrrrrrrbb]bb]eeeee]	chr18:3452012-3452309(+)$1	297	28	62	11.1485
cc[ccc[ccc[cccpppppppcccccc]cccccc	chr17:7476604-7476859(+)$1	255	135	169	12.3302
hhhhhhhh####bbqqqqqqqqbb]hhhhhhhh:	chr7:1498849-1499105(-)$1	256	198	232	11.5262
[a!!ggggggg[aqqqqqqqqaggggggg]a]bb	chr1:1499956-1500212(-)$1	256	126	160	13.7999
ccc[hhhhhhhhsssssssssshhhhhhhh22cc	chr19:10406921-10407175(+)$1	254	25	59	10.7616
iiiiiiii[cccssssssssssccciiiiiiiii	chr22:50018401-50018662(-)$1	261	225	259	13.8852
d!!ddddffffffqqqqqqqqffffff]dddddd	chr12:112035461-112035691(-)$1	230	22	56	10.7457
"ggggggg[cccssssssssssccc]gggggggd	chr1:26146934-26147219(+)$1	285	53	87	13.4665
e:dddd[ccc!!bbqqqqqqqqbb22ccc]dddd	chr21:44299436-44299698(-)$1	262	155	189	11.7324
==####a[eeeeerrrrrrrrreeeeea======	chr4:1805303-1805542(+)$1	239	89	123	13.0780
"""ccc[cccddddpppppppdddd]ccc]ccc8	chr7:138145265-138145520(+)$1	255	178	212	11.0934
f[bb[bb[ffffffqqqqqqqqffffff]bbbb]	chr17:79679324-79679578(+)$1	254	101	135	10.9360
d!!eeeee[a[bbqqqqqqqqbb]aeeeee4444	chr12:133295290-133295567(+)$1	277	55	89	12.2841
iiiiii!!ccc[cccpppppppccc22ccc]iii	chr12:112036485-112036706(-)$1	221	124	158	12.4673
[cccccc[ddddwwwwwwwwwwwwwwddddccc]	chr1:19669252-19669494(-)$1	242	149	183	11.9588
ffff[ccc"""cccqqqqqqqqccc22ccc]fff	chr3:49050068-49050333(+)$1	265	182	216	13.7367
gggggga!!ddddqqqqqqqqdddd22a]ggggg	chr12:112036753-112036991(-)$1	238	100	134	13.1499
gggg"""gggggggpppppppggggggggggggg	chr1:36788436-36788683(+)$1	247	183	217	11.7402
b[bb[iiiiiiiiirrrrrrrrriiiiiiiii22	chr17:73892726-73893012(-)$1	286	63	97	13.4993
b[dddd[ddddcccqqqqqqqqccc]dddddddd	chr20:62518749-62519036(+)$1	287	57	91	12.6907
eeee[dddd!!cccqqqqqqqqccc22ddddeee	chr2:232574814-232575075(+)$1	261	201	235	13.0353
[hhhhhhhh!!bbqqqqqqqqbb22hhhhhhhh2	chr11:66392979-66393226(+)$1	247	15	49	11.8782
fffff[bb[ddddrrrrrrrrrdddd]bb]ffff	chr14:105911907-105912180(+)$1	273	126	160	10.5933
eeee[ffffffcccqqqqqqqqccc22ffffffe	chr19:11201097-11201428(+)$1	331	148	182	12.2481
ccc!!ddddddddqqqqqqqqdddd]dddd4444	chr4:151504840-151505109(-)$1	269	154	188	12.2355
hhhhhhhh[a[cccpppppppccca]hhhhhhhh	chr8:145107380-145107660(-)$1	280	93	127	11.7299
g!!bb[cccccc[apppppppaccc]ccc]bb]g	chr5:60628324-60628571(+)$1	247	175	209	12.2466
ggg"""eeeeecccqqqqqqqqccc]eeeeeggg	chr19:12805616-12805970(-)$1	354	169	203	14.0093
g!!==========qqqqqqqq==========ggg	chr1:6266640-6266910(-)$1	270	66	100	14.8528
$$$ggggggg[bbrrrrrrrrrbb]ggggggg66	chr17:62501790-62502080(-)$1	290	73	107	12.4783
d####iiiiiiiiipppppppiiiiiiiiidddd	chr16:1835531-1835798(+)$1	267	199	233	11.5894
[bbhhhhhhhhcccqqqqqqqqccc]hhhhhhhh	chr16:81348624-81348892(+)$1	268	94	128	13.2126
cc####gggggggqqqqqqqqggggggg333ccc	chrX:20284617-20284876(-)$1	259	144	178	13.5163
bggggggg!!cccqqqqqqqqccc4444gggggg	chr19:56614059-56614353(-)$1	294	36	70	14.1361
hhh!!dddd[ddddqqqqqqqqdddd]dddd333	chr2:24238982-24239221(+)$1	239	108	142	12.4297
ddddeeeee"""bbqqqqqqqqbb22eeeee]dd	chr16:88772584-88772848(-)$1	264	106	140	11.7109
hhhhhccc[ccc[bbpppppppbb]cccccc333	chr11:63884829-63885094(-)$1	265	158	192	10.9794
iiii[cccwwwwwwwwwwwwwwccc]iiiiiiii	chr13:114144719-114145012(-)$1	293	17	51	13.7169
####dddd[ddddssssssssssdddd]dddd33	chr19:2270315-2270599(+)$1	284	83	117	10.8595
[eeeeegggggggbbqqqqqqqqbb]ggggggg]	chr12:31477991-31478238(-)$1	247	76	110	12.1623
gccc[bb[eeeeesssssssssseeeee22bb33	chr11:63884384-63884647(-)$1	263	17	51	10.6530
iiii!!dddd!!cccooooooccc22dddd]iii	chr12:62996653-62996982(+)$1	329	280	314	10.0026
b[bbbb[gggggggrrrrrrrrrgggggggbb]b	chr11:2406863-2407120(+)$1	257	13	47	11.6324
!!ddddbb!!cccrrrrrrrrrccc22bb]dddd	chr19:3637677-3637973(-)$1	296	183	217	12.6313

#otherMatches

#Seq PSSM
GCCCUCCUCAUGCCGGCUUCAAGACUGAGGGACA	chr16:89043042-89043353(-)$1	311	129	163	12.5141
GCUCCACGAGCGCCAACUCCCAGCGCCGUCCAGA	chr4:1993987-1994232(-)$1	245	202	236	12.0523
UGUGAAGCCUCCGUCUACCUUUGGGACUCAGCAG	chr1:1155979-1156229(-)$1	250	157	191	13.9913
CGAGCGGCGCUUCUACGAACACGAGGCCACACAG	chr8:144672119-144672367(-)$1	248	184	218	12.4503
UUCCAAGGCAAUAGCAAACGGGGCGGGGCUUGGA	chr3:9851546-9851804(+)$1	258	2	36	11.2032
AGAGGAAGAGAAUGAGGUAGAGUGUUCUUUUGCC	chr4:78740326-78740613(-)$1	287	140	174	13.6945
AAGGUGGAGAAAGCUUUUUCUUCUUUCUCUCCUC	chr12:116714153-116714407(-)$1	254	170	204	13.1046
UCUGUCGAGCCACCAAUUUCAUAGGCGUGGCCGA	chr4:1804658-1804922(+)$1	264	61	95	11.4290
GGCGUGCUGCCUGAGCGAGGAGGCCAAGGAAGCC	chr9:80646047-80646324(-)$1	277	193	227	9.5270
GGGGUGCGCCUGCUUCCUCCACGCACGUCGCCCA	chr4:1994032-1994281(-)$1	249	167	201	12.3796
GGCGUGCUCGAGGGCGUGGUCACCUCGGGCUCGC	chr19:863083-863375(+)$1	292	38	72	11.7824
CACACUGGGCUGUCUGGCUGCUGGCAGCAAGGCU	chr2:97533517-97533803(-)$1	286	187	221	11.5182
GACUUCUCUUCAUGGCCGGGAUGAAGAGGACUGC	chr19:55543390-55543684(+)$1	294	197	231	12.0120
GGGGGCGGCUCUGAUUCCUUUCCAUGGCCCGCCU	chr18:3452012-3452309(+)$1	297	28	62	11.1485
CGGCCGCGUGAGGCACCAGGAGCCCACCCGGCGC	chr17:7476604-7476859(+)$1	255	135	169	12.3302
GCGACGUGAAUAUCUGCAACAUGACCACGUCGUU	chr7:1498849-1499105(-)$1	256	198	232	11.5262
UCGGGCACAGGAGGCGUGUCACCCUGUGCAGUGC	chr1:1499956-1500212(-)$1	256	126	160	13.7999
AGUGCGGGGGGCGGUGGGAGAAGCCCCCCGGAGC	chr19:10406921-10407175(+)$1	254	25	59	10.7616
CAAGGCCAUGAGAUUUAUGUUCCUCUGGUCUUGG	chr22:50018401-50018662(-)$1	261	225	259	13.8852
GCUGGUGGCAGGGGGCGGGCACCCUGCGCACUUA	chr12:112035461-112035691(-)$1	230	22	56	10.7457
UGCUGCGCGCGGCAAAGUUUCACUGAGCGCGGCG	chr1:26146934-26147219(+)$1	285	53	87	13.4665
AUUCCUGGCCACCUCCAUAGCAAGCAGGUGAGGG	chr21:44299436-44299698(-)$1	262	155	189	11.7324
CCUAUCGCUCUGCUCUCUCUUUGUAGACGGCGGG	chr4:1805303-1805542(+)$1	239	89	123	13.0780
AACCUGUUGGACACUUGCGCCGUGUGCCACCAGA	chr7:138145265-138145520(+)$1	255	178	212	11.0934
UGGUCGGGCCGGGAUUGGGCUCUCCUGGGCCAUG	chr17:79679324-79679578(+)$1	254	101	135	10.9360
AGCAUCCCGCCGCUGUUGUCCGCUGGGGAUUUUG	chr12:133295290-133295567(+)$1	277	55	89	12.2841
UGUCGGCACCCCAGCCCCCUCCGCUccgggcccg	chr12:112036485-112036706(-)$1	221	124	158	12.4673
AUCCCUGACAACCAAAAGUUUAAGCAGUUGCAGA	chr1:19669252-19669494(-)$1	242	149	183	11.9588
UGUGGACCAGACCCUGUUUCCUGGGAAGGUGCAC	chr3:49050068-49050333(+)$1	265	182	216	13.7367
CGGCUCCCGGCUGUCCCCGCCCGGCGUGCGAGCC	chr12:112036753-112036991(-)$1	238	100	134	13.1499
CCCUUCGCGGGGCAUCCAUGCUGCUCUGGGGGGC	chr1:36788436-36788683(+)$1	247	183	217	11.7402
ACGCUGCCCUGCGGCCACAACUUCUGCGGGGCCU	chr17:73892726-73893012(-)$1	286	63	97	13.4993
CUGGGAGUGGGGGAAUCCCAGCUCUGCCCAUCCC	chr20:62518749-62519036(+)$1	287	57	91	12.6907
GGGACGCACUCGGCGGCCCCGGGCCACGUGCUCC	chr2:232574814-232575075(+)$1	261	201	235	13.0353
GGGGCAGGUCAGCCGUCUGCAGCCUACCUGUCCA	chr11:66392979-66393226(+)$1	247	15	49	11.8782
GGGGGCUGGGUGAAUGAAGUCCUCGCACGCCCCC	chr14:105911907-105912180(+)$1	273	126	160	10.5933
CCUCACCUUGUCCGGGGCGAGGCGGAUGCAGGGG	chr19:11201097-11201428(+)$1	331	148	182	12.2481
CCGCAGAGUCUUCAGCACUGAGAGGCACUUGUUU	chr4:151504840-151505109(-)$1	269	154	188	12.2355
GGGGUGGGGUGCUGUUUCUCCCGGAGCCCACCCC	chr8:145107380-145107660(-)$1	280	93	127	11.7299
cgggcggccccggcgacgacagcgguggcggcgg	chr5:60628324-60628571(+)$1	247	175	209	12.2466
GGUGCUAGGGUCCCUGCCCACUGGGCACCCUACU	chr19:12805616-12805970(-)$1	354	169	203	14.0093
CAACCUUGGGCCCGGGGGAUGGGGUCUGGGGGGU	chr1:6266640-6266910(-)$1	270	66	100	14.8528
AGUGUCUUCAAGCUUGCUUUUUGUGUGGGGAUUG	chr17:62501790-62502080(-)$1	290	73	107	12.4783
CUCCGGGAGGCUUUGGACUUGGGAGCCUUUGAAC	chr16:1835531-1835798(+)$1	267	199	233	11.5894
AUGGCUGAGGGCAGUGCCGUGUCUGACCCUCAGC	chr16:81348624-81348892(+)$1	268	94	128	13.2126
GCGGACCCGUGGCAGAAGAUGGCUGUGGAGAGCC	chrX:20284617-20284876(-)$1	259	144	178	13.5163
GCUCCAAGUUUCCUUUCUGCUGGAUGAUCUUGGG	chr19:56614059-56614353(-)$1	294	36	70	14.1361
UGUGGCUGGGUUCUUCAUCAACAGGAGCCAGAGG	chr2:24238982-24239221(+)$1	239	108	142	12.4297
ggccccgggAUGGCUAUGUUCCGCAGCCUGGUGG	chr16:88772584-88772848(-)$1	264	106	140	11.7109
GUGGUUGCUGGCCGUGGUCUUGGCAGCCGCAUUG	chr11:63884829-63885094(-)$1	265	158	192	10.9794
GCGCGGGGGAGAUGGUAGGUGGCCCGGCGUCGCC	chr13:114144719-114145012(-)$1	293	17	51	13.7169
GGACCUCGUGGGCCCCGUUUUUCGCCCCUGAGCG	chr19:2270315-2270599(+)$1	284	83	117	10.8595
CCGGUGCGUUCACCUGUAGCGUAGGUGUGGGCGA	chr12:31477991-31478238(-)$1	247	76	110	12.1623
CUCCAGCUCACGCAUCUUGGCCAGCGUGUUGUAG	chr11:63884384-63884647(-)$1	263	17	51	10.6530
GGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCC	chr12:62996653-62996982(+)$1	329	280	314	10.0026
GUGCUGUGGUGUGCCCGUCGUCUGUGCACCCGUG	chr11:2406863-2407120(+)$1	257	13	47	11.6324
AAGGGUCCUCGGUCCUGCCCCUGCCCCGGCACCC	chr19:3637677-3637973(-)$1	296	183	217	12.6313

#DB
((((((((((.(.(........).))))))...)	chr16:89043042-89043353(-)$1	1	129	163	12.5141
(((..(((.((((.........)))))))..)).	chr4:1993987-1994232(-)$1	1	202	236	12.0523
(((..((.(.(((........)))).))..))))	chr1:1155979-1156229(-)$1	1	157	191	13.9913
((.(.(..(((((.........)))))..).)..	chr8:144672119-144672367(-)$1	1	184	218	12.4503
(((((((.(....((.......))..).))))))	chr3:9851546-9851804(+)$1	1	2	36	11.2032
.(((((((((((((........))))))))).))	chr4:78740326-78740613(-)$1	1	140	174	13.6945
.(((.((((((((.........))))))))))).	chr12:116714153-116714407(-)$1	1	170	204	13.1046
(.(.(((.((((((..........).))))))))	chr4:1804658-1804922(+)$1	1	61	95	11.4290
(.((.(((.(((..((......))..))).))).	chr9:80646047-80646324(-)$1	1	193	227	9.5270
((((((.((.(((.........))).))))))).	chr4:1994032-1994281(-)$1	1	167	201	12.3796
.(((.((((((((.........)))))))).)))	chr19:863083-863375(+)$1	1	38	72	11.7824
((((((..((((((........))))))..)).)	chr2:97533517-97533803(-)$1	1	187	221	11.5182
(..((((((((((.......))))))))))))).	chr19:55543390-55543684(+)$1	1	197	231	12.0120
((((((((((.((.........)).)).))))).	chr18:3452012-3452309(+)$1	1	28	62	11.1485
((.(((.(((.(((.......)))))).))))))	chr17:7476604-7476859(+)$1	1	135	169	12.3302
((((((((....((........)).)))))))).	chr7:1498849-1499105(-)$1	1	198	232	11.5262
.(..(((((((.(........)))))))).).))	chr1:1499956-1500212(-)$1	1	126	160	13.7999
(((.((((((((..........))))))))..))	chr19:10406921-10407175(+)$1	1	25	59	10.7616
((((((((.(((..........))))))))))))	chr22:50018401-50018662(-)$1	1	225	259	13.8852
(..((((((((((........)))))).))))))	chr12:112035461-112035691(-)$1	1	22	56	10.7457
.(((((((.(((..........))).))))))))	chr1:26146934-26147219(+)$1	1	53	87	13.4665
).((((.(((..((........))..))).))))	chr21:44299436-44299698(-)$1	1	155	189	11.7324
((....(.(((((.........))))))))))))	chr4:1805303-1805542(+)$1	1	89	123	13.0780
...(((.(((((((.......)))).))).))).	chr7:138145265-138145520(+)$1	1	178	212	11.0934
(.((.((.((((((........)))))).)))).	chr17:79679324-79679578(+)$1	1	101	135	10.9360
(..(((((.(.((........)).))))))....	chr12:133295290-133295567(+)$1	1	55	89	12.2841
((((((..(((.(((.......)))..))).)))	chr12:112036485-112036706(-)$1	1	124	158	12.4673
.((((((.((((..............))))))).	chr1:19669252-19669494(-)$1	1	149	183	11.9588
((((.(((...(((........)))..))).)))	chr3:49050068-49050333(+)$1	1	182	216	13.7367
(((((((..((((........))))..).)))))	chr12:112036753-112036991(-)$1	1	100	134	13.1499
((((...(((((((.......)))))))))))))	chr1:36788436-36788683(+)$1	1	183	217	11.7402
(.((.(((((((((.........)))))))))..	chr17:73892726-73893012(-)$1	1	63	97	13.4993
(.((((.(((((((........))).))))))))	chr20:62518749-62519036(+)$1	1	57	91	12.6907
((((.((((..(((........)))..)))))))	chr2:232574814-232575075(+)$1	1	201	235	13.0353
.((((((((..((........))..)))))))).	chr11:66392979-66393226(+)$1	1	15	49	11.8782
(((((.((.((((.........)))).)).))))	chr14:105911907-105912180(+)$1	1	126	160	10.5933
((((.(((((((((........)))..)))))))	chr19:11201097-11201428(+)$1	1	148	182	12.2481
(((..((((((((........)))).))))....	chr4:151504840-151505109(-)$1	1	154	188	12.2355
((((((((.(.(((.......)))).))))))))	chr8:145107380-145107660(-)$1	1	93	127	11.7299
(..((.((((((.(.......)))).))).)).)	chr5:60628324-60628571(+)$1	1	175	209	12.2466
(((...((((((((........))).))))))))	chr19:12805616-12805970(-)$1	1	169	203	14.0093
(..((((((((((........)))))))))))))	chr1:6266640-6266910(-)$1	1	66	100	14.8528
...(((((((.((.........)).)))))))..	chr17:62501790-62502080(-)$1	1	73	107	12.4783
(....(((((((((.......)))))))))))))	chr16:1835531-1835798(+)$1	1	199	233	11.5894
.(((((((((((((........))).))))))))	chr16:81348624-81348892(+)$1	1	94	128	13.2126
((....(((((((........)))))))...)))	chrX:20284617-20284876(-)$1	1	144	178	13.5163
((((((((..(((........)))....))))))	chr19:56614059-56614353(-)$1	1	36	70	14.1361
(((..((((.((((........)))).))))...	chr2:24238982-24239221(+)$1	1	108	142	12.4297
(((((((((...((........))..))))).))	chr16:88772584-88772848(-)$1	1	106	140	11.7109
((((((((.(((.((.......)).))))))...	chr11:63884829-63885094(-)$1	1	158	192	10.9794
((((.(((..............))).))))))))	chr13:114144719-114145012(-)$1	1	17	51	13.7169
....((((.((((..........)))).))))..	chr19:2270315-2270599(+)$1	1	83	117	10.8595
.((((((((((((((........)).))))))).	chr12:31477991-31478238(-)$1	1	76	110	12.1623
((((.((.(((((..........)))))..))..	chr11:63884384-63884647(-)$1	1	17	51	10.6530
((((..((((..(((......)))..)))).)))	chr12:62996653-62996982(+)$1	1	280	314	10.0026
(.((((.(((((((.........))))))))).)	chr11:2406863-2407120(+)$1	1	13	47	11.6324
..((((((..(((.........)))..)).))))	chr19:3637677-3637973(-)$1	1	183	217	12.6313

#PSSM
g : 0.12	[ : 0.12	c : 0.12	b : 0.10	e : 0.08	i : 0.08	h : 0.07	d : 0.07	f : 0.05	= : 0.03	" : 0.03	a : 0.01	: : 0.01	$ : 0.01	# : 0.01	! : 0.01	
c : 0.15	e : 0.10	g : 0.10	[ : 0.10	! : 0.10	i : 0.08	h : 0.08	b : 0.03	= : 0.03	d : 0.03	f : 0.03	# : 0.03	a : 0.01	: : 0.01	" : 0.01	$ : 0.01	
c : 0.12	b : 0.10	g : 0.10	! : 0.10	e : 0.08	d : 0.08	i : 0.08	h : 0.08	# : 0.07	[ : 0.03	f : 0.03	= : 0.01	a : 0.01	" : 0.01	$ : 0.01	
e : 0.12	g : 0.10	d : 0.10	c : 0.10	! : 0.08	b : 0.08	i : 0.08	h : 0.08	# : 0.07	[ : 0.03	= : 0.03	f : 0.03	a : 0.01	" : 0.01	
[ : 0.19	e : 0.10	g : 0.10	d : 0.10	h : 0.10	! : 0.08	c : 0.07	b : 0.05	# : 0.05	= : 0.03	i : 0.03	" : 0.03	f : 0.01	
c : 0.15	d : 0.14	h : 0.12	e : 0.10	g : 0.10	b : 0.08	i : 0.08	= : 0.03	# : 0.03	" : 0.03	[ : 0.03	a : 0.01	f : 0.01	! : 0.01	
c : 0.14	g : 0.12	h : 0.12	[ : 0.10	d : 0.10	e : 0.08	b : 0.08	i : 0.07	! : 0.05	= : 0.03	a : 0.03	" : 0.01	f : 0.01	
c : 0.15	g : 0.14	[ : 0.12	h : 0.12	d : 0.10	e : 0.08	! : 0.07	i : 0.07	b : 0.05	= : 0.03	f : 0.03	
[ : 0.15	e : 0.12	g : 0.10	d : 0.10	h : 0.08	c : 0.08	f : 0.07	i : 0.05	! : 0.05	a : 0.03	b : 0.03	= : 0.03	# : 0.01	" : 0.01	w : 0.01	
c : 0.15	d : 0.14	e : 0.10	g : 0.10	h : 0.07	f : 0.07	! : 0.07	[ : 0.05	i : 0.05	# : 0.03	= : 0.03	a : 0.03	" : 0.03	b : 0.01	w : 0.01	
c : 0.17	d : 0.15	[ : 0.10	e : 0.08	g : 0.08	h : 0.07	f : 0.07	! : 0.07	i : 0.05	# : 0.03	= : 0.03	" : 0.03	w : 0.01	
c : 0.29	d : 0.14	e : 0.07	b : 0.07	g : 0.07	i : 0.05	h : 0.05	f : 0.05	# : 0.03	= : 0.03	[ : 0.03	! : 0.03	a : 0.01	" : 0.01	w : 0.01	
c : 0.24	d : 0.12	b : 0.12	e : 0.07	g : 0.07	[ : 0.05	i : 0.05	f : 0.05	s : 0.05	h : 0.03	= : 0.03	w : 0.03	# : 0.01	! : 0.01	a : 0.01	
r : 0.17	q : 0.17	c : 0.17	b : 0.10	s : 0.08	a : 0.05	i : 0.05	f : 0.03	d : 0.03	w : 0.03	g : 0.03	! : 0.01	p : 0.01	
q : 0.42	r : 0.21	p : 0.12	s : 0.10	b : 0.07	c : 0.03	w : 0.03	
q : 0.43	r : 0.21	p : 0.17	s : 0.10	w : 0.03	b : 0.01	o : 0.01	
q : 0.43	r : 0.21	p : 0.17	s : 0.10	o : 0.03	w : 0.03	
q : 0.43	r : 0.21	p : 0.17	s : 0.10	o : 0.03	w : 0.03	
q : 0.43	r : 0.21	p : 0.17	s : 0.10	o : 0.03	w : 0.03	
q : 0.43	r : 0.21	p : 0.17	s : 0.10	o : 0.03	w : 0.03	
q : 0.43	r : 0.21	p : 0.15	s : 0.10	o : 0.03	w : 0.03	= : 0.01	
q : 0.26	r : 0.21	s : 0.10	c : 0.08	p : 0.05	d : 0.05	= : 0.03	a : 0.03	b : 0.03	w : 0.03	g : 0.03	o : 0.01	f : 0.01	i : 0.01	
c : 0.31	b : 0.17	d : 0.10	h : 0.05	s : 0.05	f : 0.05	g : 0.05	e : 0.03	i : 0.03	= : 0.03	r : 0.03	a : 0.01	w : 0.01	q : 0.01	
c : 0.31	b : 0.15	d : 0.12	g : 0.07	e : 0.05	i : 0.05	h : 0.05	f : 0.05	] : 0.03	= : 0.03	s : 0.01	w : 0.01	2 : 0.01	
c : 0.24	d : 0.12	2 : 0.10	a : 0.08	] : 0.07	g : 0.07	e : 0.05	i : 0.05	h : 0.05	f : 0.05	= : 0.03	w : 0.01	4 : 0.01	b : 0.01	
] : 0.22	2 : 0.19	e : 0.08	h : 0.08	g : 0.08	d : 0.07	i : 0.07	f : 0.05	= : 0.03	c : 0.03	b : 0.01	w : 0.01	4 : 0.01	
e : 0.14	c : 0.12	h : 0.12	g : 0.12	2 : 0.10	i : 0.08	d : 0.08	b : 0.05	f : 0.05	= : 0.03	] : 0.03	a : 0.01	4 : 0.01	
c : 0.14	h : 0.12	g : 0.12	e : 0.10	d : 0.10	] : 0.08	i : 0.08	b : 0.07	f : 0.05	= : 0.03	a : 0.03	2 : 0.01	4 : 0.01	
c : 0.15	g : 0.14	d : 0.14	e : 0.12	h : 0.12	i : 0.08	2 : 0.07	= : 0.05	] : 0.03	b : 0.03	f : 0.01	3 : 0.01	
g : 0.14	d : 0.14	e : 0.12	h : 0.12	] : 0.12	i : 0.08	2 : 0.07	c : 0.07	= : 0.05	a : 0.01	b : 0.01	f : 0.01	3 : 0.01	
d : 0.14	g : 0.12	c : 0.12	] : 0.08	e : 0.08	b : 0.08	i : 0.07	h : 0.07	= : 0.05	3 : 0.03	2 : 0.03	4 : 0.03	f : 0.03	a : 0.01	
g : 0.15	c : 0.15	b : 0.10	d : 0.10	i : 0.08	h : 0.07	3 : 0.05	] : 0.05	e : 0.05	f : 0.05	= : 0.03	4 : 0.03	a : 0.01	2 : 0.01	
c : 0.17	g : 0.14	d : 0.12	3 : 0.10	h : 0.07	i : 0.07	b : 0.05	e : 0.05	] : 0.05	f : 0.05	= : 0.03	4 : 0.03	2 : 0.01	6 : 0.01	
] : 0.15	d : 0.14	g : 0.12	3 : 0.08	c : 0.08	i : 0.08	e : 0.05	= : 0.03	b : 0.03	4 : 0.03	f : 0.03	2 : 0.03	h : 0.03	: : 0.01	8 : 0.01	6 : 0.01	

#score	698.2315917349698
#seq	57
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_transcript_m3_run2.txt

#BEAR
dd!!ccc"""ddddnnnnndddd]ccc2	chr2:97559865-97560114(-)$1	249	189	217	14.3489
e"""ccc[bb[cccnnnnncccbbccce	chr19:50363663-50363905(+)$1	242	160	188	10.5675
gggg%%%%%%ddddnnnnndddd333gg	chr5:138652048-138652289(+)$1	241	18	46	11.4578
hhh[dddd[ddddoooooodddd]dddd	chr2:97525459-97525712(-)$1	253	45	73	9.3039
hhhhhha"""ddddnnnnndddd333a]	chr2:203157694-203157955(+)$1	261	62	90	14.2316
::ggggggg!!cccnnnnncccgggggg	chr8:141969746-141970013(-)$1	267	107	135	10.7298
::gggggggddddoooooodddd]gggg	chr17:37618281-37618523(+)$1	242	13	41	9.2706
###bb"""ffffffnnnnnffffff333	chr19:4065992-4066239(-)$1	247	14	42	10.9728
cc####a[ffffffnnnnnffffff]a3	chr11:93454735-93454991(+)$1	256	77	105	11.0899
dd[dddd[a!!ddddmmmmdddd]a]dd	chr8:1721769-1722052(+)$1	283	125	153	8.5323
Cbb[ccc!!eeeeennnnneeeee]ccc	chr9:33952673-33952944(-)$1	271	230	258	11.9100
dddd[bb!!ddddooooooddddbb]dd	chr22:42301205-42301458(+)$1	253	179	207	9.8813
dddffffff[ddddooooooddddffff	chr11:62287547-62287790(-)$1	243	119	147	9.3609
[ffffff"""ddddnnnnnddddfffff	chr19:39926387-39926596(-)$1	209	70	98	13.0367
:dddd[a[ddddbbnnnnnbb]dddd]a	chr4:889716-889990(-)$1	274	166	194	10.1990
dbb[eeeee[ddddnnnnndddd]eeee	chr7:1527996-1528277(-)$1	281	132	160	12.2597
GGeeeee"""ddddoooooodddd4444	chr5:175055152-175055393(+)$1	241	154	182	10.8894
eeeeeeeeee[cccooooooccc333ee	chr19:1410341-1410605(+)$1	264	203	231	8.8951
dddd[dddd[ddddoooooodddd]ddd	chr17:80808010-80808332(+)$1	322	110	138	9.7207
ggggggg!!eeeeennnnneeeee]ggg	chr8:128749182-128749431(+)$1	249	29	57	13.1955
f[dddd"""eeeeeooooooeeeee]dd	chr19:58898547-58898813(+)$1	266	198	226	10.1785
ggggg$$$$$eeeeellleeeee333gg	chr1:202741744-202742001(-)$1	257	167	195	9.2344
[dddd!!gggggggnnnnnggggggg22	chr11:16863705-16863962(+)$1	257	63	91	11.2508
========!!ddddnnnnndddd=====	chr1:16199559-16199807(+)$1	248	59	87	14.4981
h!!ffffff[ddddnnnnndddd]ffff	chr8:100305131-100305355(+)$1	224	85	113	12.3099
eeeeeeeeeeddddnnnnndddd66666	chr2:172014487-172014754(-)$1	267	197	225	10.6608
ccc[ccc!!eeeeennnnneeeee22cc	chr1:36789253-36789533(+)$1	280	77	105	13.2429
ee[a[bb[dddd[annnnna]dddd]bb	chr17:49197724-49197972(-)$1	248	72	100	11.3689
ffff!!cccddddoooooodddd]ccc4	chr6:89514029-89514287(-)$1	258	32	60	10.3407
d]ddddccceeeeennnnneeeeea!!g	chr10:71930023-71930327(-)$1	304	21	49	10.8752
C:ggggggg!!cccnnnnncccgggggg	chr3:15844784-15845053(-)$1	269	115	143	10.5998
bb[bb[a[gggggggnnnnnggggggg]	chr14:23791034-23791279(+)$1	245	12	40	9.4800
hhhhccc!!eeeeeooooooeeeee333	chr16:81581834-81582095(+)$1	261	154	182	10.4491
e:==========bbnnnnnbb22=====	chr13:98671866-98672136(+)$1	270	164	192	10.0810
ffffffbb!!ddddnnnnndddd4444b	chr7:148506992-148507248(-)$1	256	139	167	12.9815
dddd####a[ddddnnnnndddd]a22d	chr22:41897266-41897532(+)$1	266	111	139	14.0225
ee[dddddddd[bbnnnnnbb]dddd33	chr11:118344461-118344743(+)$1	282	140	168	10.0761
"bb[bb"""eeeeennnnneeeee4444	chr11:62285494-62285752(-)$1	258	138	166	12.9881
$$$$dddd!!ddddllldddddddd444	chr9:134013739-134013952(+)$1	213	69	97	8.5108
#dddd####ccc[annnnna]ccc22dd	chr1:94313106-94313317(+)$1	211	11	39	11.8149
ffffffccc[ddddnnnnndddd]ccc]	chr5:36241725-36241980(-)$1	255	171	199	12.9947
"ccc!!bb[eeeeennnnneeeee]bb]	chr3:9438814-9439068(-)$1	254	192	220	11.9005
e:ccc####eeeeeooooooeeeee22c	chr9:136134506-136134757(-)$1	251	198	226	9.9198
ggggggg[ffffffnnnnnffffff22g	chr12:109124543-109124827(-)$1	284	224	252	10.7122
::::a[a!!eeeeennnnneeeee22a]	chr3:196081385-196081635(-)$1	250	6	34	10.1132
:ccc[iiiiiiiiinnnnniiiiiiiii	chr11:404647-404971(+)$1	324	20	48	10.9711
b[a[a[a[a[a[annnnna]a]a]a]a]	chr2:97559914-97560137(-)$1	223	23	51	11.0658
$$ccc$$$$$ddddnnnnndddd4444c	chr4:164045188-164045417(-)$1	229	118	146	13.5779
ggggg[a[bb[cccnnnnnccc]bb]ag	chr11:66385266-66385505(+)$1	239	179	207	11.4617
fff[ggggggg[bbnnnnnbbggggggg	chr17:43227556-43227794(+)$1	238	151	179	10.4029
]ccc:dddd[ddddnnnnndddddddd:	chr20:60891402-60891645(-)$1	243	129	157	10.3434
FFdddd####ddddnnnnndddd333dd	chr1:22082186-22082445(-)$1	259	130	158	13.8233
ggggggg"""ddddooooooddddgggg	chr11:2965677-2965932(-)$1	255	185	213	11.7187
:ccc[eeeee[cccnnnnnccceeeee]	chr13:92000245-92000478(+)$1	233	201	229	10.5996

#otherMatches

#Seq PSSM
UAGAGGUGGGUCUGUGUCUCAGAAGCCA	chr2:97559865-97560114(-)$1	249	189	217	14.3489
GCUUGGGAGCCUGUGGCCAGCAGCCCCC	chr19:50363663-50363905(+)$1	242	160	188	10.5675
ugggauuacaggugcccaccaccacgcc	chr5:138652048-138652289(+)$1	241	18	46	11.4578
CCUGUACAGGGCUGGGAAAGGCUGUGUG	chr2:97525459-97525712(-)$1	253	45	73	9.3039
AGAUCACUAAGGGCCAAGUGUUCAAUGA	chr2:203157694-203157955(+)$1	261	62	90	14.2316
uugcccaggcuggucuugaacuccuggg	chr8:141969746-141970013(-)$1	267	107	135	10.7298
UUUUCCCUUCUUCAGGUCAGGGGAAAGG	chr17:37618281-37618523(+)$1	242	13	41	9.2706
GGAUUGAGCUCCAUGGGGGAUGGGGGGG	chr19:4065992-4066239(-)$1	247	14	42	10.9728
CAAUAAGGGCAUAUGUCUGgugugugug	chr11:93454735-93454991(+)$1	256	77	105	11.0899
GCUGGAGGAAGAGGCCUUGGCCUGUGCU	chr8:1721769-1722052(+)$1	283	125	153	8.5323
CUUGAGAUUGAAAGUACCCCUUUCUUCU	chr9:33952673-33952944(-)$1	271	230	258	11.9100
aggaacugcaccaacuucaugguagauu	chr22:42301205-42301458(+)$1	253	179	207	9.8813
GAUGUUACCCUUCCUAAAGUGGAAGGUG	chr11:62287547-62287790(-)$1	243	119	147	9.3609
AAGGGCCCGCUGCAGUCUGUGCAGGUCU	chr19:39926387-39926596(-)$1	209	70	98	13.0367
accugccucagccucccaaagugcugcg	chr4:889716-889990(-)$1	274	166	194	10.1990
UGCGUGUGUGUCCUGAGGUGGGAGGCAC	chr7:1527996-1528277(-)$1	281	132	160	12.2597
cccucccaaagcuguaugcucagucaaa	chr5:175055152-175055393(+)$1	241	154	182	10.8894
UCUUAAAGUCUGGCUUGAGCGCCUCUGA	chr19:1410341-1410605(+)$1	264	203	231	8.8951
gugcuguuguuggcuguguuguuguugg	chr17:80808010-80808332(+)$1	322	110	138	9.7207
GGGGGUUGCUUUGCGGUGGGCAGAAAGC	chr8:128749182-128749431(+)$1	249	29	57	13.1955
AUGGUCUUUCGGGGAUAGUGCCCCGCGG	chr19:58898547-58898813(+)$1	266	198	226	10.1785
aaaaaaaaaaaaGACCUUGUUUUGUGUU	chr1:202741744-202742001(-)$1	257	167	195	9.2344
GCUGUUCUGUCUCUCCAAAAGAGGCACU	chr11:16863705-16863962(+)$1	257	63	91	11.2508
GGAGACUUGAUGGGUAAGUUCCAAGGUU	chr1:16199559-16199807(+)$1	248	59	87	14.4981
aucauuucuauaguuuguuacuagagaa	chr8:100305131-100305355(+)$1	224	85	113	12.3099
AGUGUUUAGCACCUUUUCCAGGUAUACA	chr2:172014487-172014754(-)$1	267	197	225	10.6608
ggagggAGAGCCCGGCCCGCGGGCCGUC	chr1:36789253-36789533(+)$1	280	77	105	13.2429
GGGCGCUAUGACGAGGAGGUGGUCAAAG	chr17:49197724-49197972(-)$1	248	72	100	11.3689
UUUAUUCAUAUAGUAUAUUCUAUAAUGC	chr6:89514029-89514287(-)$1	258	32	60	10.3407
CAUUACGCGCCCGGAAGUCCCGGGGAGG	chr10:71930023-71930327(-)$1	304	21	49	10.8752
uuggucaggcuggucucaaacuccugac	chr3:15844784-15845053(-)$1	269	115	143	10.5998
agcgagcaggccggcggcuggccggccg	chr14:23791034-23791279(+)$1	245	12	40	9.4800
ucaccugccucccaaagugcugggauua	chr16:81581834-81582095(+)$1	261	154	182	10.4491
GACUUUCAAUUAUCUGUGUGACCUGAUU	chr13:98671866-98672136(+)$1	270	164	192	10.0810
CCUCCUCCAGUCAGUGCCUCUGAGCGGG	chr7:148506992-148507248(-)$1	256	139	167	12.9815
gcccugcUGUCcugugugccagguccug	chr22:41897266-41897532(+)$1	266	111	139	14.0225
AGGGUUUCCAAAGAGAAGGUUGUUGGUG	chr11:118344461-118344743(+)$1	282	140	168	10.0761
GGGGCCACAGGUUUCUGGCGAACUGAAG	chr11:62285494-62285752(-)$1	258	138	166	12.9881
ugaccaggcugguuucaaacuccugacc	chr9:134013739-134013952(+)$1	213	69	97	8.5108
CUCCAACAGGUggcuccguggcgcaaug	chr1:94313106-94313317(+)$1	211	11	39	11.8149
ccgccgcgcggccccggcugggcgguga	chr5:36241725-36241980(-)$1	255	171	199	12.9947
GAGCCAUUGCUCUCGCAGAGGGAGGAGC	chr3:9438814-9439068(-)$1	254	192	220	11.9005
cacacuGCUUUUGAUUuuuuuuaaauug	chr9:136134506-136134757(-)$1	251	198	226	9.9198
GCCCUGCAGAUCUCGGUUGGGGGUCAGG	chr12:109124543-109124827(-)$1	284	224	252	10.7122
CUUAGGUUCUUGAGGCUUACUUAACUAG	chr3:196081385-196081635(-)$1	250	6	34	10.1132
GACGGAGGGGCCCCUCGCUGGGGCCCCU	chr11:404647-404971(+)$1	324	20	48	10.9711
aggaugagugggugggugaguggguggg	chr2:97559914-97560137(-)$1	223	23	51	11.0658
cuggccucaagcaaucccuuugucucag	chr4:164045188-164045417(-)$1	229	118	146	13.5779
AUCAGUAGUAGUCAUUGCUUGAGUAGUC	chr11:66385266-66385505(+)$1	239	179	207	11.4617
UGUAUAUAAGACAGUGGACCUUUUUAUG	chr17:43227556-43227794(+)$1	238	151	179	10.4029
AGGCACUGGCUGCCACUGAGGCACCAGC	chr20:60891402-60891645(-)$1	243	129	157	10.3434
cuggccuuaagcaguccuccugucucgg	chr1:22082186-22082445(-)$1	259	130	158	13.8233
AGAACACAUUUGUAACUGAAUACAGUGU	chr11:2965677-2965932(-)$1	255	185	213	11.7187
agggggcggcgugcgcguggcggccgcg	chr13:92000245-92000478(+)$1	233	201	229	10.5996

#DB
((..(((...((((.....)))).))).	chr2:97559865-97560114(-)$1	1	189	217	14.3489
(...(((.((.(((.....)))))))))	chr19:50363663-50363905(+)$1	1	160	188	10.5675
((((......((((.....))))...))	chr5:138652048-138652289(+)$1	1	18	46	11.4578
(((.((((.((((......)))).))))	chr2:97525459-97525712(-)$1	1	45	73	9.3039
(((((((...((((.....))))...).	chr2:203157694-203157955(+)$1	1	62	90	14.2316
..(((((((..(((.....)))))))))	chr8:141969746-141970013(-)$1	1	107	135	10.7298
..(((((((((((......)))).))))	chr17:37618281-37618523(+)$1	1	13	41	9.2706
...((...((((((.....))))))...	chr19:4065992-4066239(-)$1	1	14	42	10.9728
((....(.((((((.....)))))).).	chr11:93454735-93454991(+)$1	1	77	105	11.0899
((.((((.(..((((....)))).).))	chr8:1721769-1722052(+)$1	1	125	153	8.5323
)((.(((..(((((.....))))).)))	chr9:33952673-33952944(-)$1	1	230	258	11.9100
((((.((..((((......)))))).))	chr22:42301205-42301458(+)$1	1	179	207	9.8813
)))((((((.((((......))))))))	chr11:62287547-62287790(-)$1	1	119	147	9.3609
.((((((...((((.....)))))))))	chr19:39926387-39926596(-)$1	1	70	98	13.0367
.((((.(.((((((.....)).)))).)	chr4:889716-889990(-)$1	1	166	194	10.1990
(((.(((((.((((.....)))).))))	chr7:1527996-1528277(-)$1	1	132	160	12.2597
))(((((...((((......))))....	chr5:175055152-175055393(+)$1	1	154	182	10.8894
((((((((((.(((......)))...))	chr19:1410341-1410605(+)$1	1	203	231	8.8951
((((.((((.((((......)))).)))	chr17:80808010-80808332(+)$1	1	110	138	9.7207
(((((((..(((((.....))))).)))	chr8:128749182-128749431(+)$1	1	29	57	13.1955
(.((((...(((((......))))).))	chr19:58898547-58898813(+)$1	1	198	226	10.1785
(((((.....(((((...)))))...))	chr1:202741744-202742001(-)$1	1	167	195	9.2344
.((((..(((((((.....)))))))..	chr11:16863705-16863962(+)$1	1	63	91	11.2508
((((((((..((((.....)))))))))	chr1:16199559-16199807(+)$1	1	59	87	14.4981
(..((((((.((((.....)))).))))	chr8:100305131-100305355(+)$1	1	85	113	12.3099
((((((((((((((.....)))).....	chr2:172014487-172014754(-)$1	1	197	225	10.6608
(((.(((..(((((.....)))))..))	chr1:36789253-36789533(+)$1	1	77	105	13.2429
((.(.((.((((.(.....).)))).))	chr17:49197724-49197972(-)$1	1	72	100	11.3689
((((..(((((((......)))).))).	chr6:89514029-89514287(-)$1	1	32	60	10.3407
).)))))))(((((.....)))))(..(	chr10:71930023-71930327(-)$1	1	21	49	10.8752
(.(((((((..(((.....)))))))))	chr3:15844784-15845053(-)$1	1	115	143	10.5998
((.((.(.(((((((.....))))))).	chr14:23791034-23791279(+)$1	1	12	40	9.4800
(((((((..(((((......)))))...	chr16:81581834-81582095(+)$1	1	154	182	10.4491
).((((((((((((.....))..)))))	chr13:98671866-98672136(+)$1	1	164	192	10.0810
((((((((..((((.....))))....)	chr7:148506992-148507248(-)$1	1	139	167	12.9815
((((....(.((((.....)))).)..)	chr22:41897266-41897532(+)$1	1	111	139	14.0225
((.((((((((.((.....)).))))..	chr11:118344461-118344743(+)$1	1	140	168	10.0761
.((.((...(((((.....)))))....	chr11:62285494-62285752(-)$1	1	138	166	12.9881
....((((..((((...))))))))...	chr9:134013739-134013952(+)$1	1	69	97	8.5108
.((((....(((.(.....).)))..))	chr1:94313106-94313317(+)$1	1	11	39	11.8149
(((((((((.((((.....)))).))).	chr5:36241725-36241980(-)$1	1	171	199	12.9947
.(((..((.(((((.....))))).)).	chr3:9438814-9439068(-)$1	1	192	220	11.9005
).(((....(((((......)))))..)	chr9:136134506-136134757(-)$1	1	198	226	9.9198
(((((((.((((((.....))))))..)	chr12:109124543-109124827(-)$1	1	224	252	10.7122
....(.(..(((((.....)))))..).	chr3:196081385-196081635(-)$1	1	6	34	10.1132
.(((.(((((((((.....)))))))))	chr11:404647-404971(+)$1	1	20	48	10.9711
(.(.(.(.(.(.(.....).).).).).	chr2:97559914-97560137(-)$1	1	23	51	11.0658
..(((.....((((.....))))....)	chr4:164045188-164045417(-)$1	1	118	146	13.5779
(((((.(.((.(((.....))).)).))	chr11:66385266-66385505(+)$1	1	179	207	11.4617
(((.(((((((.((.....)))))))))	chr17:43227556-43227794(+)$1	1	151	179	10.4029
.))).((((.((((.....)))))))).	chr20:60891402-60891645(-)$1	1	129	157	10.3434
((((((....((((.....))))...))	chr1:22082186-22082445(-)$1	1	130	158	13.8233
(((((((...((((......))))))))	chr11:2965677-2965932(-)$1	1	185	213	11.7187
.(((.(((((.(((.....)))))))).	chr13:92000245-92000478(+)$1	1	201	229	10.5996

#PSSM
d : 0.14	e : 0.12	g : 0.11	: : 0.11	f : 0.09	h : 0.07	# : 0.03	c : 0.03	C : 0.03	[ : 0.03	b : 0.03	" : 0.03	$ : 0.03	G : 0.01	= : 0.01	] : 0.01	F : 0.01	
d : 0.16	g : 0.11	: : 0.11	c : 0.11	f : 0.09	b : 0.07	e : 0.07	h : 0.05	[ : 0.03	$ : 0.03	" : 0.01	# : 0.01	G : 0.01	= : 0.01	! : 0.01	] : 0.01	F : 0.01	
d : 0.18	g : 0.16	c : 0.12	f : 0.09	[ : 0.07	h : 0.05	b : 0.05	e : 0.05	! : 0.03	# : 0.03	= : 0.03	" : 0.01	$ : 0.01	: : 0.01	a : 0.01	
d : 0.20	g : 0.16	[ : 0.12	f : 0.11	c : 0.11	e : 0.05	h : 0.03	b : 0.03	= : 0.03	! : 0.01	" : 0.01	# : 0.01	a : 0.01	$ : 0.01	: : 0.01	
d : 0.18	g : 0.16	c : 0.12	[ : 0.09	f : 0.09	e : 0.07	b : 0.05	# : 0.03	= : 0.03	! : 0.03	a : 0.03	% : 0.01	h : 0.01	: : 0.01	
d : 0.16	g : 0.12	c : 0.09	f : 0.09	[ : 0.09	e : 0.09	# : 0.07	b : 0.05	! : 0.05	$ : 0.03	= : 0.03	% : 0.01	h : 0.01	" : 0.01	i : 0.01	
c : 0.14	a : 0.12	g : 0.12	d : 0.11	e : 0.09	b : 0.07	# : 0.07	" : 0.05	f : 0.05	$ : 0.03	= : 0.03	% : 0.01	! : 0.01	i : 0.01	
[ : 0.16	" : 0.14	! : 0.11	d : 0.09	g : 0.09	e : 0.07	# : 0.07	c : 0.05	f : 0.03	$ : 0.03	= : 0.03	b : 0.03	% : 0.01	i : 0.01	
! : 0.16	" : 0.12	g : 0.11	f : 0.09	d : 0.09	e : 0.07	a : 0.05	c : 0.05	# : 0.05	b : 0.03	[ : 0.03	$ : 0.03	% : 0.01	= : 0.01	i : 0.01	
e : 0.24	[ : 0.14	d : 0.12	! : 0.11	" : 0.09	f : 0.05	g : 0.05	b : 0.03	$ : 0.03	% : 0.01	= : 0.01	c : 0.01	i : 0.01	# : 0.01	
d : 0.48	e : 0.20	[ : 0.07	! : 0.05	f : 0.05	g : 0.05	= : 0.01	c : 0.01	i : 0.01	a : 0.01	
d : 0.48	e : 0.20	c : 0.12	f : 0.05	[ : 0.05	g : 0.03	= : 0.01	i : 0.01	
d : 0.44	e : 0.20	c : 0.11	b : 0.07	f : 0.05	g : 0.03	[ : 0.03	i : 0.01	a : 0.01	
d : 0.37	e : 0.20	c : 0.11	o : 0.07	b : 0.07	f : 0.05	g : 0.03	a : 0.03	i : 0.01	n : 0.01	
n : 0.70	o : 0.22	d : 0.01	e : 0.01	g : 0.01	l : 0.01	
n : 0.72	o : 0.22	l : 0.03	m : 0.01	
n : 0.72	o : 0.22	l : 0.03	m : 0.01	
n : 0.72	o : 0.22	m : 0.01	l : 0.01	d : 0.01	
n : 0.70	o : 0.22	m : 0.01	e : 0.01	d : 0.01	a : 0.01	
d : 0.37	e : 0.14	o : 0.14	c : 0.09	b : 0.07	f : 0.05	a : 0.03	g : 0.01	n : 0.01	i : 0.01	] : 0.01	
d : 0.44	e : 0.20	c : 0.11	b : 0.07	f : 0.05	g : 0.03	] : 0.03	i : 0.01	a : 0.01	
d : 0.46	e : 0.20	c : 0.12	f : 0.05	] : 0.05	g : 0.05	2 : 0.01	i : 0.01	
d : 0.49	e : 0.22	g : 0.09	f : 0.05	c : 0.03	b : 0.01	2 : 0.01	i : 0.01	a : 0.01	] : 0.01	
e : 0.20	] : 0.18	d : 0.16	3 : 0.09	g : 0.09	f : 0.07	b : 0.05	= : 0.03	4 : 0.03	6 : 0.01	c : 0.01	i : 0.01	
g : 0.12	d : 0.11	f : 0.11	3 : 0.09	e : 0.09	c : 0.07	a : 0.07	] : 0.07	4 : 0.07	2 : 0.05	b : 0.03	= : 0.03	6 : 0.01	i : 0.01	
g : 0.14	3 : 0.12	] : 0.12	2 : 0.11	c : 0.09	d : 0.09	4 : 0.09	f : 0.05	e : 0.03	= : 0.03	6 : 0.01	! : 0.01	b : 0.01	i : 0.01	
g : 0.16	d : 0.14	c : 0.11	a : 0.09	4 : 0.09	2 : 0.07	3 : 0.05	f : 0.05	e : 0.05	= : 0.03	b : 0.03	] : 0.01	6 : 0.01	! : 0.01	i : 0.01	
g : 0.20	d : 0.14	] : 0.12	3 : 0.07	c : 0.07	4 : 0.07	e : 0.05	f : 0.05	2 : 0.03	= : 0.03	b : 0.03	a : 0.01	6 : 0.01	i : 0.01	: : 0.01	

#score	604.4246625404794
#seq	54
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_transcript_m3_run2.txt

#BEAR
:cccooooooccc	chr9:139912805-139913096(-)$1	291	0	13	10.4109
ddddooooooddd	chr19:48894598-48894826(-)$1	228	214	227	10.3520
eeeeooooooeee	chr17:20792435-20792753(+)$1	318	296	309	9.2986
ccccooooooccc	chr9:131028262-131028520(-)$1	258	101	114	10.9154
ddddooooooddd	chr11:2326046-2326326(+)$1	280	12	25	10.3520
:cccooooooccc	chrX:153340070-153340416(-)$1	346	153	166	10.4109
ddddooooooddd	chr19:46284058-46284305(-)$1	247	148	161	10.3520
:cccooooooccc	chr1:29225835-29226127(+)$1	292	118	131	10.4109
gg[aooooooagg	chr1:155260099-155260363(-)$1	264	207	220	9.5844
"cccooooooccc	chr12:122618185-122618483(+)$1	298	278	291	11.0445
a[bboooooobba	chr12:105062860-105063156(+)$1	296	60	73	9.2407
ddddooooooddd	chr5:31526437-31526732(-)$1	295	277	290	10.3520
ggggooooooggg	chr5:139033096-139033358(+)$1	262	22	35	9.6075
ddddooooooddd	chrX:73069492-73069712(-)$1	220	92	105	10.3520
eeeeooooooeee	chr7:156685068-156685407(-)$1	339	297	310	9.2986
ddddooooooddd	chr7:917390-917771(+)$1	381	245	258	10.3520
====oooooo===	chr9:139561173-139561449(+)$1	276	60	73	9.7590
"cccooooooccc	chrX:153280657-153280907(-)$1	250	174	187	11.0445
d[bboooooobb]	chr19:39833911-39834251(+)$1	340	93	106	9.1138
d[bboooooobbd	chr1:897450-897745(+)$1	295	161	174	9.3573
:cccooooooccc	chr1:22157151-22157500(-)$1	349	134	147	10.4109
ddddooooooddd	chr5:31526682-31526955(-)$1	273	199	212	10.3520
:cccooooooccc	chr16:85629124-85629367(+)$1	243	185	198	10.4109
eeeeooooooeee	chr8:145011491-145011751(-)$1	260	157	170	9.2986
ggggooooooggg	chr3:49046667-49047017(+)$1	350	36	49	9.6075
[cccooooooccc	chr1:33236476-33236737(+)$1	261	8	21	11.0037
ddddooooooddd	chr5:31526541-31526849(-)$1	308	93	106	10.3520
ddddooooooddd	chr19:55966624-55967006(-)$1	382	149	162	10.3520
!!bboooooobb3	chr19:6278491-6278809(-)$1	318	144	157	9.3035
:cccooooooccc	chr16:67576593-67576992(+)$1	399	377	390	10.4109
:cccooooooccc	chr6:35277791-35278066(+)$1	275	140	153	10.4109
:cccooooooccc	chr19:10909457-10909724(+)$1	267	90	103	10.4109
ddddooooooddd	chr19:41113584-41113839(+)$1	255	83	96	10.3520
ee[aooooooa]e	chr5:151189700-151189996(+)$1	296	124	137	9.3317
%cccooooooccc	chr19:50372371-50372779(-)$1	408	44	57	10.6062
eeeeooooooeee	chrX:153947149-153947444(-)$1	295	58	71	9.2986
ddddooooooddd	chr22:23560166-23560483(+)$1	317	23	36	10.3520
!cccooooooccc	chr19:2037920-2038168(-)$1	248	11	24	11.1063
:cccooooooccc	chr1:156699630-156699989(+)$1	359	186	199	10.4109
:cccooooooccc	chr19:14202818-14203093(-)$1	275	121	134	10.4109
ddddooooooddd	chr7:110903405-110903750(-)$1	345	238	251	10.3520
!cccooooooccc	chr21:9926753-9927036(-)$1	283	107	120	11.1063
[cccooooooccc	chr7:101621558-101621873(+)$1	315	79	92	11.0037
(cccooooooccc	chr12:49444225-49444499(-)$1	274	60	73	10.4914
!cccooooooccc	chr22:50022841-50023103(-)$1	262	175	188	11.1063
:cccooooooccc	chr7:149186726-149186987(-)$1	261	129	142	10.4109
[cccooooooccc	chr1:43417535-43417877(-)$1	342	94	107	11.0037
ddddooooooddd	chr1:14107167-14107410(+)$1	243	17	30	10.3520
ddddooooooddd	chr3:13032614-13032902(-)$1	288	10	23	10.3520
[cccooooooccc	chr7:149313027-149313291(-)$1	264	179	192	11.0037
:cccooooooccc	chr15:67835422-67835777(+)$1	355	51	64	10.4109
:cccooooooccc	chr4:1310332-1310592(+)$1	260	126	139	10.4109
ddddooooooddd	chr1:16946683-16946962(-)$1	279	57	70	10.3520
a[bboooooobb]	chr22:22901352-22901599(-)$1	247	98	111	9.1531
d[bboooooobbd	chr20:400551-400775(+)$1	224	68	81	9.3573
&cccooooooccc	chr9:136136114-136136406(-)$1	292	47	60	10.6165
c[bboooooobbc	chr4:752145-752523(+)$1	378	187	200	9.3766
ddddooooooddd	chr1:43395781-43396185(-)$1	404	76	89	10.3520
:cccooooooccc	chr19:55972217-55972530(-)$1	313	25	38	10.4109
ggggooooooggg	chr3:183901563-183901903(+)$1	340	274	287	9.6075
ddddooooooddd	chr21:36188779-36189090(-)$1	311	111	124	10.3520
eeeeooooooeee	chr14:24615879-24616343(-)$1	464	67	80	9.2986
"cccooooooccc	chrX:48651822-48652135(+)$1	313	218	231	11.0445
#cccooooooccc	chr6:43472867-43473148(+)$1	281	90	103	11.0484
[cccooooooccc	chr6:10785506-10785829(+)$1	323	60	73	11.0037
ddddooooooddd	chr19:38867179-38867500(+)$1	321	290	303	10.3520
:cccooooooccc	chrM:3395-3638(+)$1	243	158	171	10.4109
ecccooooooccc	chr11:2691027-2691386(-)$1	359	285	298	10.8717
eeeeooooooeee	chr1:207859465-207859714(+)$1	249	209	222	9.2986
ddddooooooddd	chr1:150525996-150526287(+)$1	291	168	181	10.3520
$cccooooooccc	chr19:5044641-5044904(+)$1	263	97	110	10.9087

#otherMatches

#Seq PSSM
ugugcccucccac	chr9:139912805-139913096(-)$1	291	0	13	10.4109
AAUCUCUUCCGAU	chr19:48894598-48894826(-)$1	228	214	227	10.3520
guaauuacauuug	chr17:20792435-20792753(+)$1	318	296	309	9.2986
UGAUAACCUGGUC	chr9:131028262-131028520(-)$1	258	101	114	10.9154
GGUCAUCGCAGAC	chr11:2326046-2326326(+)$1	280	12	25	10.3520
cugauauuauuca	chrX:153340070-153340416(-)$1	346	153	166	10.4109
CGAGCUGCAUCUC	chr19:46284058-46284305(-)$1	247	148	161	10.3520
CCCCUUUCCUGGG	chr1:29225835-29226127(+)$1	292	118	131	10.4109
GGUCCUGAAAGUC	chr1:155260099-155260363(-)$1	264	207	220	9.5844
CCACAAAAUAGUG	chr12:122618185-122618483(+)$1	298	278	291	11.0445
GUCUCCUGCCAGC	chr12:105062860-105063156(+)$1	296	60	73	9.2407
UGCUAAUAACAGC	chr5:31526437-31526732(-)$1	295	277	290	10.3520
GGGGGAGGAUUCC	chr5:139033096-139033358(+)$1	262	22	35	9.6075
AAUUUUCAUUGAU	chrX:73069492-73069712(-)$1	220	92	105	10.3520
CCGGGAAGGGCCG	chr7:156685068-156685407(-)$1	339	297	310	9.2986
GCCCUACACCGGG	chr7:917390-917771(+)$1	381	245	258	10.3520
CGAGUCUUGCCUU	chr9:139561173-139561449(+)$1	276	60	73	9.7590
UUGGACUUCCCCA	chrX:153280657-153280907(-)$1	250	174	187	11.0445
CAUCUUCCCUGAA	chr19:39833911-39834251(+)$1	340	93	106	9.1138
UCGGCCCCUCCCA	chr1:897450-897745(+)$1	295	161	174	9.3573
ACUCUCACCUGAG	chr1:22157151-22157500(-)$1	349	134	147	10.4109
CCUGCCCAAUCAG	chr5:31526682-31526955(-)$1	273	199	212	10.3520
ccauucauucaug	chr16:85629124-85629367(+)$1	243	185	198	10.4109
GGCCUGGCCUGGC	chr8:145011491-145011751(-)$1	260	157	170	9.2986
uucuccaccaaga	chr3:49046667-49047017(+)$1	350	36	49	9.6075
CGCCCCCCACGGU	chr1:33236476-33236737(+)$1	261	8	21	11.0037
CCUGCCCAAUCAG	chr5:31526541-31526849(-)$1	308	93	106	10.3520
AUCCUAUCUUGGA	chr19:55966624-55967006(-)$1	382	149	162	10.3520
CAGAUCUCCCUCC	chr19:6278491-6278809(-)$1	318	144	157	9.3035
CUGCACCCCAGCA	chr16:67576593-67576992(+)$1	399	377	390	10.4109
ACUGUGUUUCCAG	chr6:35277791-35278066(+)$1	275	140	153	10.4109
cgguuccgucacc	chr19:10909457-10909724(+)$1	267	90	103	10.4109
CAAGUUAGUUUUU	chr19:41113584-41113839(+)$1	255	83	96	10.3520
UCUGUCUUCCCCG	chr5:151189700-151189996(+)$1	296	124	137	9.3317
UGAGUUCUCCCUC	chr19:50372371-50372779(-)$1	408	44	57	10.6062
CUCACUACGCUGA	chrX:153947149-153947444(-)$1	295	58	71	9.2986
GGGCAAAUGGGCC	chr22:23560166-23560483(+)$1	317	23	36	10.3520
UGGCCCUGCUGCC	chr19:2037920-2038168(-)$1	248	11	24	11.1063
ugccacccuaggc	chr1:156699630-156699989(+)$1	359	186	199	10.4109
AGAUUUUAACGUC	chr19:14202818-14203093(-)$1	275	121	134	10.4109
augguucuccuca	chr7:110903405-110903750(-)$1	345	238	251	10.3520
CGACCUCCCUGUC	chr21:9926753-9927036(-)$1	283	107	120	11.1063
caggcuaaaaccu	chr7:101621558-101621873(+)$1	315	79	92	11.0037
CUGGAGACACCCA	chr12:49444225-49444499(-)$1	274	60	73	10.4914
ccagUGCUGUUUG	chr22:50022841-50023103(-)$1	262	175	188	11.1063
CCUGAUCCCCCAG	chr7:149186726-149186987(-)$1	261	129	142	10.4109
GUGUCCUAGUGCA	chr1:43417535-43417877(-)$1	342	94	107	11.0037
GAUCCCCACAGAU	chr1:14107167-14107410(+)$1	243	17	30	10.3520
UGCAGUGAGAUGC	chr3:13032614-13032902(-)$1	288	10	23	10.3520
ccugaucccccag	chr7:149313027-149313291(-)$1	264	179	192	11.0037
CCCGACAGCCUGG	chr15:67835422-67835777(+)$1	355	51	64	10.4109
CCACCCACAUGUG	chr4:1310332-1310592(+)$1	260	126	139	10.4109
GGCCUGUCCUGGC	chr1:16946683-16946962(-)$1	279	57	70	10.3520
GGGCGUGAAUGCG	chr22:22901352-22901599(-)$1	247	98	111	9.1531
CCACUCCCACGUG	chr20:400551-400775(+)$1	224	68	81	9.3573
UGGCCUCCCUGCC	chr9:136136114-136136406(-)$1	292	47	60	10.6165
UUCUCCCUCCAGA	chr4:752145-752523(+)$1	378	187	200	9.3766
GACUCUUCUCAGU	chr1:43395781-43396185(-)$1	404	76	89	10.3520
CGCCCCCUUUGGC	chr19:55972217-55972530(-)$1	313	25	38	10.4109
GACUUCGUCCAGU	chr3:183901563-183901903(+)$1	340	274	287	9.6075
gaauccugccauu	chr21:36188779-36189090(-)$1	311	111	124	10.3520
CUCUCUUCUAAGA	chr14:24615879-24616343(-)$1	464	67	80	9.2986
UCCUAAGCUCAGG	chrX:48651822-48652135(+)$1	313	218	231	11.0445
CUGCCCAACUGCA	chr6:43472867-43473148(+)$1	281	90	103	11.0484
UGCUGUAAUGAGC	chr6:10785506-10785829(+)$1	323	60	73	11.0037
aagaccaaguucu	chr19:38867179-38867500(+)$1	321	290	303	10.3520
CUUCUACUAUGAA	chrM:3395-3638(+)$1	243	158	171	10.4109
gacagccauaugu	chr11:2691027-2691386(-)$1	359	285	298	10.8717
accauuaaccugg	chr1:207859465-207859714(+)$1	249	209	222	9.2986
CUGAAACUGCUCA	chr1:150525996-150526287(+)$1	291	168	181	10.3520
ugagcucccccuc	chr19:5044641-5044904(+)$1	263	97	110	10.9087

#DB
.(((......)))	chr9:139912805-139913096(-)$1	1	0	13	10.4109
((((......)))	chr19:48894598-48894826(-)$1	1	214	227	10.3520
((((......)))	chr17:20792435-20792753(+)$1	1	296	309	9.2986
((((......)))	chr9:131028262-131028520(-)$1	1	101	114	10.9154
((((......)))	chr11:2326046-2326326(+)$1	1	12	25	10.3520
.(((......)))	chrX:153340070-153340416(-)$1	1	153	166	10.4109
((((......)))	chr19:46284058-46284305(-)$1	1	148	161	10.3520
.(((......)))	chr1:29225835-29226127(+)$1	1	118	131	10.4109
((.(......)))	chr1:155260099-155260363(-)$1	1	207	220	9.5844
.(((......)))	chr12:122618185-122618483(+)$1	1	278	291	11.0445
(.((......)))	chr12:105062860-105063156(+)$1	1	60	73	9.2407
((((......)))	chr5:31526437-31526732(-)$1	1	277	290	10.3520
((((......)))	chr5:139033096-139033358(+)$1	1	22	35	9.6075
((((......)))	chrX:73069492-73069712(-)$1	1	92	105	10.3520
((((......)))	chr7:156685068-156685407(-)$1	1	297	310	9.2986
((((......)))	chr7:917390-917771(+)$1	1	245	258	10.3520
((((......)))	chr9:139561173-139561449(+)$1	1	60	73	9.7590
.(((......)))	chrX:153280657-153280907(-)$1	1	174	187	11.0445
(.((......)).	chr19:39833911-39834251(+)$1	1	93	106	9.1138
(.((......)))	chr1:897450-897745(+)$1	1	161	174	9.3573
.(((......)))	chr1:22157151-22157500(-)$1	1	134	147	10.4109
((((......)))	chr5:31526682-31526955(-)$1	1	199	212	10.3520
.(((......)))	chr16:85629124-85629367(+)$1	1	185	198	10.4109
((((......)))	chr8:145011491-145011751(-)$1	1	157	170	9.2986
((((......)))	chr3:49046667-49047017(+)$1	1	36	49	9.6075
.(((......)))	chr1:33236476-33236737(+)$1	1	8	21	11.0037
((((......)))	chr5:31526541-31526849(-)$1	1	93	106	10.3520
((((......)))	chr19:55966624-55967006(-)$1	1	149	162	10.3520
..((......)).	chr19:6278491-6278809(-)$1	1	144	157	9.3035
.(((......)))	chr16:67576593-67576992(+)$1	1	377	390	10.4109
.(((......)))	chr6:35277791-35278066(+)$1	1	140	153	10.4109
.(((......)))	chr19:10909457-10909724(+)$1	1	90	103	10.4109
((((......)))	chr19:41113584-41113839(+)$1	1	83	96	10.3520
((.(......).)	chr5:151189700-151189996(+)$1	1	124	137	9.3317
.(((......)))	chr19:50372371-50372779(-)$1	1	44	57	10.6062
((((......)))	chrX:153947149-153947444(-)$1	1	58	71	9.2986
((((......)))	chr22:23560166-23560483(+)$1	1	23	36	10.3520
.(((......)))	chr19:2037920-2038168(-)$1	1	11	24	11.1063
.(((......)))	chr1:156699630-156699989(+)$1	1	186	199	10.4109
.(((......)))	chr19:14202818-14203093(-)$1	1	121	134	10.4109
((((......)))	chr7:110903405-110903750(-)$1	1	238	251	10.3520
.(((......)))	chr21:9926753-9927036(-)$1	1	107	120	11.1063
.(((......)))	chr7:101621558-101621873(+)$1	1	79	92	11.0037
.(((......)))	chr12:49444225-49444499(-)$1	1	60	73	10.4914
.(((......)))	chr22:50022841-50023103(-)$1	1	175	188	11.1063
.(((......)))	chr7:149186726-149186987(-)$1	1	129	142	10.4109
.(((......)))	chr1:43417535-43417877(-)$1	1	94	107	11.0037
((((......)))	chr1:14107167-14107410(+)$1	1	17	30	10.3520
((((......)))	chr3:13032614-13032902(-)$1	1	10	23	10.3520
.(((......)))	chr7:149313027-149313291(-)$1	1	179	192	11.0037
.(((......)))	chr15:67835422-67835777(+)$1	1	51	64	10.4109
.(((......)))	chr4:1310332-1310592(+)$1	1	126	139	10.4109
((((......)))	chr1:16946683-16946962(-)$1	1	57	70	10.3520
(.((......)).	chr22:22901352-22901599(-)$1	1	98	111	9.1531
(.((......)))	chr20:400551-400775(+)$1	1	68	81	9.3573
.(((......)))	chr9:136136114-136136406(-)$1	1	47	60	10.6165
(.((......)))	chr4:752145-752523(+)$1	1	187	200	9.3766
((((......)))	chr1:43395781-43396185(-)$1	1	76	89	10.3520
.(((......)))	chr19:55972217-55972530(-)$1	1	25	38	10.4109
((((......)))	chr3:183901563-183901903(+)$1	1	274	287	9.6075
((((......)))	chr21:36188779-36189090(-)$1	1	111	124	10.3520
((((......)))	chr14:24615879-24616343(-)$1	1	67	80	9.2986
.(((......)))	chrX:48651822-48652135(+)$1	1	218	231	11.0445
.(((......)))	chr6:43472867-43473148(+)$1	1	90	103	11.0484
.(((......)))	chr6:10785506-10785829(+)$1	1	60	73	11.0037
((((......)))	chr19:38867179-38867500(+)$1	1	290	303	10.3520
.(((......)))	chrM:3395-3638(+)$1	1	158	171	10.4109
)(((......)))	chr11:2691027-2691386(-)$1	1	285	298	10.8717
((((......)))	chr1:207859465-207859714(+)$1	1	209	222	9.2986
((((......)))	chr1:150525996-150526287(+)$1	1	168	181	10.3520
.(((......)))	chr19:5044641-5044904(+)$1	1	97	110	10.9087

#PSSM
d : 0.30	: : 0.21	e : 0.11	[ : 0.07	g : 0.05	! : 0.05	" : 0.04	c : 0.02	a : 0.02	= : 0.01	% : 0.01	( : 0.01	& : 0.01	# : 0.01	$ : 0.01	
c : 0.46	d : 0.26	e : 0.09	[ : 0.08	g : 0.05	= : 0.01	! : 0.01	
c : 0.46	d : 0.26	b : 0.09	e : 0.08	g : 0.04	[ : 0.02	= : 0.01	
c : 0.46	d : 0.26	b : 0.09	e : 0.08	g : 0.04	a : 0.02	= : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.46	d : 0.26	b : 0.09	e : 0.08	g : 0.04	a : 0.02	= : 0.01	
c : 0.46	d : 0.26	b : 0.09	e : 0.08	g : 0.05	= : 0.01	] : 0.01	
c : 0.47	d : 0.29	e : 0.09	g : 0.05	] : 0.02	a : 0.01	= : 0.01	3 : 0.01	

#score	727.9759239368941
#seq	71
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_transcript_m1_run1.txt

#BEAR
c!!dddd[ddddtttttttttttdddd]ddd	chr5:177022655-177022883(+)$1	228	32	63	25.0614
ccc"""fffffftttttttttttffffff33	chrX:47495598-47495847(-)$1	249	167	198	25.8113
"ccc"""a[ccctttttttttttccc]a333	chr7:129473670-129473975(-)$1	305	128	159	27.6141
====$$$$$cccuuuuuuuuuuuuccc8888	chr22:49918311-49918563(-)$1	252	187	218	24.1644
ffffff[eeeeettttttttttteeeee22f	chr5:74657048-74657368(+)$1	320	36	67	24.3232
hhhh####dddduuuuuuuuuuuudddd22h	chr10:70744602-70744853(+)$1	251	145	176	25.0633
dddd!!fffffftttttttttttffffffdd	chr11:44641692-44641976(+)$1	284	240	271	24.6318
g::bb[fffffftttttttttttffffff]b	chr3:186507350-186507581(+)$1	231	72	103	22.3028
b[ccc!!eeeeettttttttttteeeeeccc	chr19:573010-573249(+)$1	239	82	113	25.1344
hhhh####cccuuuuuuuuuuuuccc]hhhh	chr2:10476298-10476516(+)$1	218	17	48	24.7334
eeeee[fffffftttttttttttffffff]e	chrX:150844595-150844885(+)$1	290	159	190	24.8277
i[bb$$$$$ccctttttttttttccc333bb	chr19:14202475-14202763(-)$1	288	10	41	25.4809
dddd"""eeeeevvvvvvvvvvvvveeeee4	chr8:103839426-103839666(-)$1	240	66	97	24.0824
c[ccc[fffffftttttttttttffffff22	chr11:1773921-1774211(-)$1	290	178	209	25.1061
[ffffff!!bbuuuuuuuuuuuubb22ffff	chr19:42751649-42751912(-)$1	263	21	52	22.8209
ffff"""eeeeevvvvvvvvvvvvveeeee2	chr3:128996411-128996637(+)$1	226	75	106	23.8030
lleeeee:ddddtttttttttttdddd:eee	chr1:226111248-226111520(-)$1	272	51	82	22.1451
eeeee"""cccwwwwwwwwwwwwwwccc333	chr2:44115617-44115894(-)$1	277	167	198	24.4432
hhhhhhccc[bbtttttttttttbbccc]hh	chr2:10476142-10476364(+)$1	222	4	35	23.1280
:bb!!ffffffuuuuuuuuuuuuffffff33	chr11:5290731-5290964(-)$1	233	77	108	23.3648
dddd[bb[ddddtttttttttttddddbb]d	chr17:40128500-40128831(-)$1	331	211	242	24.6385
$$$dddd[ddddtttttttttttdddd]ddd	chr2:30482412-30482719(+)$1	307	101	132	24.2265
[eeeee[dddduuuuuuuuuuuudddd22ee	chr19:40947732-40948031(-)$1	299	14	45	24.4938
========[bbuuuuuuuuuuuubb======	chr2:89049573-89049873(+)$1	300	44	75	25.0005
ggggg"""cccuuuuuuuuuuuuccc22ggg	chr4:48862997-48863284(+)$1	287	94	125	25.8689
"""ccc[awwwwwwwwwwwwwwa]ccc4444	chr1:55530046-55530312(+)$1	266	96	127	21.4170
gggiiiiiiiiitttttttttttiiiiiiii	chr15:44063534-44063793(+)$1	259	61	92	25.1320
dddccc[ddddvvvvvvvvvvvvvdddd]cc	chr7:150779618-150779880(-)$1	262	226	257	24.1078
eeeee[bb[a[bbtttttttttttbb]a]bb	chr2:44546063-44546316(-)$1	253	55	86	21.6250
bbffffffcccuuuuuuuuuuuuccc]ffff	chr6:37142036-37142311(+)$1	275	217	248	23.6231
=====$$$$$bbuuuuuuuuuuuubb55555	chr16:3103964-3104265(-)$1	301	70	101	20.7038
eeeeeafffffftttttttttttffffff]a	chr3:46964996-46965259(-)$1	263	0	31	24.6937
qccceeeee[bbtttttttttttbb]eeeee	chr1:235273369-235273675(-)$1	306	95	126	23.2026
ddddddddd[bbtttttttttttbb]dddd]	chr1:47843769-47844107(+)$1	338	231	262	23.2474
gggg####ddddtttttttttttdddd]ggg	chr3:113528264-113528540(+)$1	276	87	118	26.9603
hhdddd!!ddddtttttttttttdddd]ddd	chr9:131020284-131020545(-)$1	261	89	120	25.0183
ggggggg[dddduuuuuuuuuuuudddd]gg	chr17:34171836-34172128(+)$1	292	201	232	25.0568
c!!dddd[ddddtttttttttttdddd]ddd	chr5:177022626-177022855(+)$1	229	61	92	25.0614
diiiiiiiiivvvvvvvvvvvvviiiiiiii	chr6:153291604-153291849(-)$1	245	95	126	23.9338
======[cccvvvvvvvvvvvvvccc]====	chr2:97525466-97525723(-)$1	257	100	131	25.2100
dddd[eeeeewwwwwwwwwwwwwweeeee]d	chr4:39455732-39455945(-)$1	213	99	130	22.0355
ee%%%%%%ddddtttttttttttdddd4444	chr15:38776747-38777033(+)$1	286	84	115	23.4996
=====####ccctttttttttttccc>>>>>	chr19:14203667-14203959(-)$1	292	182	213	26.4409
ee"""bb[ddddtttttttttttdddd]bb3	chr16:31202188-31202532(+)$1	344	125	156	25.3638
:ggggggg[ccctttttttttttcccggggg	chr15:77338344-77338615(-)$1	271	238	269	24.9137
'''''gggggggtttttttttttgggggggb	chr22:50357241-50357497(+)$1	256	215	246	21.7542
b!!bb[eeeeeuuuuuuuuuuuueeeeebb2	chr1:156104547-156104807(+)$1	260	48	79	23.3706
!ffffffyyyyyyyyyyyyyyyyffffff22	chr20:280774-281035(+)$1	261	95	126	21.1691
a####ccc[cccuuuuuuuuuuuucccccca	chr2:132278929-132279198(+)$1	269	176	207	24.7613
eee!!ffffffuuuuuuuuuuuuffffff22	chr3:48664404-48664747(-)$1	343	204	235	24.3706
ddd[eeeeewwwwwwwwwwwwwweeeee333	chr16:29821996-29822274(+)$1	278	209	240	22.2562
geeeee"""cccuuuuuuuuuuuuccc333e	chr19:54972240-54972494(+)$1	254	162	193	25.8392
[ccc####ddddvvvvvvvvvvvvvdddd]c	chr17:47787866-47788196(-)$1	330	235	266	25.0389
====="""dddduuuuuuuuuuuudddd333	chr17:73823334-73823594(-)$1	260	24	55	26.8195
============ttttttttttt========	chr1:150547214-150547493(-)$1	279	164	195	26.1194
eeee####cccuuuuuuuuuuuuccceeeee	chr11:62392558-62392802(-)$1	244	202	233	25.8940
eeee####ddddtttttttttttdddd22ee	chr2:87004387-87004700(+)$1	313	254	285	26.3960

#otherMatches

#Seq PSSM
UCACAGUGUUACUGAUCAGGGAUGUGAGGCU	chr5:177022655-177022883(+)$1	228	32	63	25.0614
UCUUGGCCAAGGAAGAAUCACACCCUUGGAA	chrX:47495598-47495847(-)$1	249	167	198	25.8113
UGUGUAUUGUGCUUAGAAAGGUUGCAGAUUU	chr7:129473670-129473975(-)$1	305	128	159	27.6141
ACGGGGGAACCAGGGAGAGGAAGAUGGGGAC	chr22:49918311-49918563(-)$1	252	187	218	24.1644
AUGUCUCUAAGCCAACUUUAAUUGCUUAAAA	chr5:74657048-74657368(+)$1	320	36	67	24.3232
GCAUAAAUGUUUUUACUAUAAAAUGAGCUAA	chr10:70744602-70744853(+)$1	251	145	176	25.0633
CUGCUUCCUGGGGCAGGGGAGGACCCAGGGC	chr11:44641692-44641976(+)$1	284	240	271	24.6318
UAAACUAGCAUAUCUGCCUUUAUUGUGUUUG	chr3:186507350-186507581(+)$1	231	72	103	22.3028
CUGCGAAGGCGGUUGGAGGUGGCCCGCCCGC	chr19:573010-573249(+)$1	239	82	113	25.1344
GUAUCCUCUGCUGuaaauuaauugcaugugc	chr2:10476298-10476516(+)$1	218	17	48	24.7334
AGGUUAUGUUUGUAAUUGUUUGUUAAGCACA	chrX:150844595-150844885(+)$1	290	159	190	24.8277
UCUCAUUUGUGCUUUUUUCUCUCGUAAUAGA	chr19:14202475-14202763(-)$1	288	10	41	25.4809
UCAUUACUUUUAAUUCUUUUCUUACUAAAAU	chr8:103839426-103839666(-)$1	240	66	97	24.0824
GAGCCCCAGCUGACAUGGAAAUACAGUUGUU	chr11:1773921-1774211(-)$1	290	178	209	25.1061
AGGGGGUGCCCUGAAACCAAACUGGAAGCCC	chr19:42751649-42751912(-)$1	263	21	52	22.8209
UCCUAAAUCUUGCUGUCCACCCUUCCAGGAA	chr3:128996411-128996637(+)$1	226	75	106	23.8030
AUCCUGUCGGCUCACAAGAUAAUAGCCAGCU	chr1:226111248-226111520(-)$1	272	51	82	22.1451
GAUACUUUGUUUUGUAUAUAUUUGUGAUUCU	chr2:44115617-44115894(-)$1	277	167	198	24.4432
UUAAUUGCAUGUUCAUAUCCUCUGCUGUAAA	chr2:10476142-10476364(+)$1	222	4	35	23.1280
UGGACCCAGAGAUUUUUUGACAGCUUUGGAA	chr11:5290731-5290964(-)$1	233	77	108	23.3648
CCCUGUGUCUCUGUGAGUGGGGUGGAGCAAA	chr17:40128500-40128831(-)$1	331	211	242	24.6385
UAUGGGGGUGGUUUAUUAUUUUUGCUGGUCC	chr2:30482412-30482719(+)$1	307	101	132	24.2265
CCUAUGCGCCUCUUCUCUCUACAGGGCAUCA	chr19:40947732-40948031(-)$1	299	14	45	24.4938
UCACCUUGAGUCUCCAGCCCACAGCCAAGGU	chr2:89049573-89049873(+)$1	300	44	75	25.0005
AGCAUAUAAGAAAAUAAAUGAUAUCUGCAUG	chr4:48862997-48863284(+)$1	287	94	125	25.8689
ccggcugggcuccucAUUUUUACGGGUAACA	chr1:55530046-55530312(+)$1	266	96	127	21.4170
AUACCAGGACCAGUUUAUGUUUGUGGUUUUG	chr15:44063534-44063793(+)$1	259	61	92	25.1320
CGCCAUGACCCUGAUUGAAGGGGUGGGUGAU	chr7:150779618-150779880(-)$1	262	226	257	24.1078
CAGGUACAAAGAUAUUUAUGAUACAUGUAUG	chr2:44546063-44546316(-)$1	253	55	86	21.6250
GGGAUAGGACUAGCACCAUUUUAAGUCCCUG	chr6:37142036-37142311(+)$1	275	217	248	23.6231
ugcaucuguccauccauccauccuugccucu	chr16:3103964-3104265(-)$1	301	70	101	20.7038
GCCUGGGGUCCCGUCUCUCCCUGGGGGCCAC	chr3:46964996-46965259(-)$1	263	0	31	24.6937
GGAGGGCUGGCUGGAGGAGUGAGGGGCAGCU	chr1:235273369-235273675(-)$1	306	95	126	23.2026
AAUACAGAGGUGGUUUAAUCAAACAGCUCUA	chr1:47843769-47844107(+)$1	338	231	262	23.2474
CAAACCCUUUGCUUCUUUAUUGUGCAGCUUU	chr3:113528264-113528540(+)$1	276	87	118	26.9603
GUAGCCAGUGCCGAGGAGGAGCAGGCAAGGC	chr9:131020284-131020545(-)$1	261	89	120	25.0183
GGAAGGUGAGUAUUAGAAUGUGUUUAUUAAC	chr17:34171836-34172128(+)$1	292	201	232	25.0568
UCACAGUGUUACUGAUCAGGGAUGUGAGGCU	chr5:177022626-177022855(+)$1	229	61	92	25.0614
UACAUGUAAAUAUUUCUGUAUUUUUUAUAUG	chr6:153291604-153291849(-)$1	245	95	126	23.9338
AGGGUGGGCCUGCUGUGGACAAUGGCAUACU	chr2:97525466-97525723(-)$1	257	100	131	25.2100
GUUACCUGGCUACAGAAAGAAGAUGCCAGAU	chr4:39455732-39455945(-)$1	213	99	130	22.0355
guggaggagguggAUAUAGAAGAUACUAAAA	chr15:38776747-38777033(+)$1	286	84	115	23.4996
AGCAGGAAGCCCAGAUAAUCAGAGGGACAGA	chr19:14203667-14203959(-)$1	292	182	213	26.4409
GCAGAGGAGGCUAUGAUCGAGGCGGCUACCG	chr16:31202188-31202532(+)$1	344	125	156	25.3638
GCCCCCAACAUAUUAUUUUUCAUUAUUUGGG	chr15:77338344-77338615(-)$1	271	238	269	24.9137
UUAAGGGGAGUGGGUGACCCUGACACUUCCA	chr22:50357241-50357497(+)$1	256	215	246	21.7542
GAGCUGCGUGAGACCAAGCGCCGUCAUGAGA	chr1:156104547-156104807(+)$1	260	48	79	23.3706
UGCUAUAUGUUUUGCUAUUUCCUUGUGGCUU	chr20:280774-281035(+)$1	261	95	126	21.1691
GUAACGACCAUGGAUCUGAAUAAACAUGUCC	chr2:132278929-132279198(+)$1	269	176	207	24.7613
CAGUCCUGCCUUCACUCUCUCAUGGGUGGCC	chr3:48664404-48664747(-)$1	343	204	235	24.3706
GCCAGAGGCAGAGAAGAGAUGGAGUCUUAGG	chr16:29821996-29822274(+)$1	278	209	240	22.2562
CAGUGUUUUCUCUCUCUCUCUUUCGAGCUUG	chr19:54972240-54972494(+)$1	254	162	193	25.8392
UGGCAAAUGGCGACUCUAUACUCUCCGCCCG	chr17:47787866-47788196(-)$1	330	235	266	25.0389
AGGGUGGUGGCCAUUACUAGAGGGGGCCUGG	chr17:73823334-73823594(-)$1	260	24	55	26.8195
GGCAAAUCCUCCAAAAGGGAAAGGGAGGAUU	chr1:150547214-150547493(-)$1	279	164	195	26.1194
GGGGAUGCGCAUUAAACUUCUUUUGCCCCCU	chr11:62392558-62392802(-)$1	244	202	233	25.8940
CCUUCUCUGUGUUUUCUAAACUUACACUAAA	chr2:87004387-87004700(+)$1	313	254	285	26.3960

#DB
(..((((.((((...........)))).)))	chr5:177022655-177022883(+)$1	1	32	63	25.0614
(((...((((((...........))))))..	chrX:47495598-47495847(-)$1	1	167	198	25.8113
.(((...(.(((...........))).)...	chr7:129473670-129473975(-)$1	1	128	159	27.6141
((((.....(((............)))....	chr22:49918311-49918563(-)$1	1	187	218	24.1644
((((((.(((((...........)))))..)	chr5:74657048-74657368(+)$1	1	36	67	24.3232
((((....((((............))))..)	chr10:70744602-70744853(+)$1	1	145	176	25.0633
((((..((((((...........))))))))	chr11:44641692-44641976(+)$1	1	240	271	24.6318
)..((.((((((...........)))))).)	chr3:186507350-186507581(+)$1	1	72	103	22.3028
(.(((..(((((...........))))))))	chr19:573010-573249(+)$1	1	82	113	25.1344
((((....(((............))).))))	chr2:10476298-10476516(+)$1	1	17	48	24.7334
(((((.((((((...........)))))).)	chrX:150844595-150844885(+)$1	1	159	190	24.8277
(.((.....(((...........)))...))	chr19:14202475-14202763(-)$1	1	10	41	25.4809
((((...(((((.............))))).	chr8:103839426-103839666(-)$1	1	66	97	24.0824
(.(((.((((((...........))))))..	chr11:1773921-1774211(-)$1	1	178	209	25.1061
.((((((..((............))..))))	chr19:42751649-42751912(-)$1	1	21	52	22.8209
((((...(((((.............))))).	chr3:128996411-128996637(+)$1	1	75	106	23.8030
..))))).((((...........)))).(((	chr1:226111248-226111520(-)$1	1	51	82	22.1451
(((((...(((..............)))...	chr2:44115617-44115894(-)$1	1	167	198	24.4432
(((((((((.((...........))))).))	chr2:10476142-10476364(+)$1	1	4	35	23.1280
.((..((((((............))))))..	chr11:5290731-5290964(-)$1	1	77	108	23.3648
((((.((.((((...........)))))).)	chr17:40128500-40128831(-)$1	1	211	242	24.6385
...((((.((((...........)))).)))	chr2:30482412-30482719(+)$1	1	101	132	24.2265
.(((((.((((............))))..))	chr19:40947732-40948031(-)$1	1	14	45	24.4938
((((((((.((............))))))))	chr2:89049573-89049873(+)$1	1	44	75	25.0005
(((((...(((............)))..)))	chr4:48862997-48863284(+)$1	1	94	125	25.8689
...(((.(..............).)))....	chr1:55530046-55530312(+)$1	1	96	127	21.4170
)))(((((((((...........))))))))	chr15:44063534-44063793(+)$1	1	61	92	25.1320
)))(((.((((.............)))).))	chr7:150779618-150779880(-)$1	1	226	257	24.1078
(((((.((.(.((...........)).).))	chr2:44546063-44546316(-)$1	1	55	86	21.6250
(((((((((((............))).))))	chr6:37142036-37142311(+)$1	1	217	248	23.6231
(((((.....((............)).....	chr16:3103964-3104265(-)$1	1	70	101	20.7038
((((((((((((...........)))))).)	chr3:46964996-46965259(-)$1	1	0	31	24.6937
.)))(((((.((...........)).)))))	chr1:235273369-235273675(-)$1	1	95	126	23.2026
)((((((((.((...........)).)))).	chr1:47843769-47844107(+)$1	1	231	262	23.2474
((((....((((...........)))).)))	chr3:113528264-113528540(+)$1	1	87	118	26.9603
((((((..((((...........)))).)))	chr9:131020284-131020545(-)$1	1	89	120	25.0183
(((((((.((((............)))).))	chr17:34171836-34172128(+)$1	1	201	232	25.0568
(..((((.((((...........)))).)))	chr5:177022626-177022855(+)$1	1	61	92	25.0614
)(((((((((.............))))))))	chr6:153291604-153291849(-)$1	1	95	126	23.9338
((((((.(((.............))).))))	chr2:97525466-97525723(-)$1	1	100	131	25.2100
((((.(((((..............))))).)	chr4:39455732-39455945(-)$1	1	99	130	22.0355
((......((((...........))))....	chr15:38776747-38777033(+)$1	1	84	115	23.4996
(((((....(((...........))).....	chr19:14203667-14203959(-)$1	1	182	213	26.4409
((...((.((((...........)))).)).	chr16:31202188-31202532(+)$1	1	125	156	25.3638
.(((((((.(((...........))))))))	chr15:77338344-77338615(-)$1	1	238	269	24.9137
.....(((((((...........))))))))	chr22:50357241-50357497(+)$1	1	215	246	21.7542
(..((.(((((............))))))).	chr1:156104547-156104807(+)$1	1	48	79	23.3706
.((((((................))))))..	chr20:280774-281035(+)$1	1	95	126	21.1691
(....(((.(((............)))))))	chr2:132278929-132279198(+)$1	1	176	207	24.7613
(((..((((((............))))))..	chr3:48664404-48664747(-)$1	1	204	235	24.3706
(((.(((((..............)))))...	chr16:29821996-29822274(+)$1	1	209	240	22.2562
)(((((...(((............)))...)	chr19:54972240-54972494(+)$1	1	162	193	25.8392
.(((....((((.............)))).)	chr17:47787866-47788196(-)$1	1	235	266	25.0389
(((((...((((............))))...	chr17:73823334-73823594(-)$1	1	24	55	26.8195
((((((((((((...........))))))))	chr1:150547214-150547493(-)$1	1	164	195	26.1194
((((....(((............))))))))	chr11:62392558-62392802(-)$1	1	202	233	25.8940
((((....((((...........))))..))	chr2:87004387-87004700(+)$1	1	254	285	26.3960

#PSSM
e : 0.15	d : 0.14	= : 0.12	g : 0.10	c : 0.07	h : 0.07	b : 0.05	[ : 0.05	" : 0.03	f : 0.03	: : 0.03	i : 0.01	l : 0.01	$ : 0.01	q : 0.01	' : 0.01	! : 0.01	a : 0.01	
e : 0.19	= : 0.12	d : 0.12	g : 0.08	c : 0.07	f : 0.07	h : 0.07	! : 0.05	[ : 0.05	b : 0.03	: : 0.01	l : 0.01	$ : 0.01	" : 0.01	i : 0.01	' : 0.01	# : 0.01	
e : 0.17	d : 0.14	= : 0.12	c : 0.10	f : 0.08	g : 0.08	! : 0.05	h : 0.05	b : 0.03	" : 0.03	: : 0.01	$ : 0.01	i : 0.01	% : 0.01	' : 0.01	# : 0.01	
d : 0.15	e : 0.15	c : 0.12	= : 0.12	f : 0.08	g : 0.07	h : 0.05	b : 0.05	" : 0.03	! : 0.03	i : 0.03	% : 0.01	' : 0.01	# : 0.01	[ : 0.01	
e : 0.15	# : 0.12	= : 0.10	d : 0.08	" : 0.08	f : 0.07	c : 0.07	! : 0.05	g : 0.05	$ : 0.03	b : 0.03	[ : 0.03	i : 0.03	h : 0.01	% : 0.01	' : 0.01	
" : 0.12	# : 0.12	f : 0.10	e : 0.10	d : 0.08	[ : 0.08	$ : 0.05	= : 0.05	c : 0.05	g : 0.05	! : 0.03	b : 0.03	i : 0.03	h : 0.01	a : 0.01	% : 0.01	
f : 0.19	" : 0.12	# : 0.12	[ : 0.08	e : 0.08	d : 0.07	$ : 0.05	b : 0.05	g : 0.05	! : 0.03	c : 0.03	= : 0.03	i : 0.03	% : 0.01	
f : 0.15	e : 0.14	# : 0.12	[ : 0.10	" : 0.07	$ : 0.05	c : 0.05	d : 0.05	a : 0.03	! : 0.03	= : 0.03	i : 0.03	g : 0.03	: : 0.01	b : 0.01	% : 0.01	y : 0.01	
d : 0.29	f : 0.14	e : 0.14	c : 0.12	[ : 0.08	$ : 0.05	i : 0.03	! : 0.01	w : 0.01	# : 0.01	g : 0.01	y : 0.01	" : 0.01	= : 0.01	
d : 0.28	c : 0.22	f : 0.14	e : 0.10	[ : 0.05	b : 0.03	w : 0.03	i : 0.03	a : 0.01	$ : 0.01	g : 0.01	y : 0.01	= : 0.01	
d : 0.28	c : 0.21	f : 0.14	b : 0.10	e : 0.08	w : 0.05	v : 0.03	i : 0.01	[ : 0.01	g : 0.01	y : 0.01	= : 0.01	
d : 0.24	u : 0.17	c : 0.12	f : 0.10	b : 0.08	e : 0.07	w : 0.07	v : 0.05	i : 0.01	g : 0.01	y : 0.01	= : 0.01	
t : 0.49	u : 0.29	v : 0.10	w : 0.07	b : 0.01	y : 0.01	
t : 0.50	u : 0.29	v : 0.10	w : 0.07	y : 0.01	
t : 0.50	u : 0.29	v : 0.10	w : 0.07	y : 0.01	
t : 0.50	u : 0.29	v : 0.10	w : 0.07	y : 0.01	
t : 0.50	u : 0.29	v : 0.10	w : 0.07	y : 0.01	
t : 0.50	u : 0.29	v : 0.10	w : 0.07	y : 0.01	
t : 0.50	u : 0.29	v : 0.10	w : 0.07	y : 0.01	
t : 0.50	u : 0.29	v : 0.10	w : 0.07	y : 0.01	
t : 0.50	u : 0.29	v : 0.10	w : 0.07	y : 0.01	
t : 0.50	u : 0.29	v : 0.10	w : 0.07	y : 0.01	
t : 0.50	u : 0.29	v : 0.10	w : 0.05	a : 0.01	y : 0.01	
d : 0.19	f : 0.15	c : 0.15	u : 0.12	b : 0.08	e : 0.07	v : 0.07	w : 0.03	i : 0.03	] : 0.01	t : 0.01	g : 0.01	= : 0.01	
d : 0.26	c : 0.22	f : 0.15	b : 0.12	e : 0.08	v : 0.05	i : 0.03	w : 0.01	g : 0.01	= : 0.01	
d : 0.28	c : 0.26	f : 0.15	e : 0.12	= : 0.03	i : 0.03	b : 0.03	] : 0.03	2 : 0.01	g : 0.01	
d : 0.29	f : 0.15	e : 0.15	c : 0.10	] : 0.08	2 : 0.03	= : 0.03	i : 0.03	g : 0.03	3 : 0.01	5 : 0.01	> : 0.01	
f : 0.19	e : 0.15	] : 0.10	d : 0.10	c : 0.05	2 : 0.05	= : 0.05	a : 0.03	3 : 0.03	4 : 0.03	i : 0.03	g : 0.03	8 : 0.01	h : 0.01	: : 0.01	b : 0.01	5 : 0.01	> : 0.01	
f : 0.19	d : 0.10	3 : 0.10	e : 0.10	2 : 0.07	] : 0.07	g : 0.07	b : 0.05	= : 0.05	c : 0.03	4 : 0.03	i : 0.03	8 : 0.01	h : 0.01	5 : 0.01	> : 0.01	
3 : 0.12	e : 0.12	d : 0.10	] : 0.10	2 : 0.08	g : 0.08	b : 0.07	c : 0.05	= : 0.05	h : 0.03	f : 0.03	4 : 0.03	i : 0.03	8 : 0.01	5 : 0.01	> : 0.01	
d : 0.12	3 : 0.12	e : 0.12	2 : 0.08	b : 0.07	g : 0.07	f : 0.05	h : 0.05	c : 0.05	4 : 0.05	= : 0.05	i : 0.03	a : 0.03	8 : 0.01	5 : 0.01	] : 0.01	> : 0.01	

#score	1387.3089757263997
#seq	57
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_CDS_m1_run1.txt

#BEAR
dd$$$$$==========[annnnna]==========dddd	chr19:56599438-56599708(-)$1	270	115	155	12.8410
=========="""ggggggglllggggggg22========	chr17:45015909-45016148(+)$1	239	29	69	14.0242
ggggggggggggg####aooooooa333ggggggg>>>>>	chr2:198265344-198265597(-)$1	253	152	192	15.5828
iiiiiiiiibb[cccrrrrrrrrrccc]bb]iiiiiiiii	chr1:39775851-39776155(+)$1	304	9	49	12.8515
ggggg!!eeeeeddddcccnnnnnccc]dddd4444eeee	chr12:132403061-132403313(+)$1	252	39	79	12.7308
I::eeeee[ccc"""cccoooooocccccc]eeeeedddd	chr7:73082306-73082595(+)$1	289	224	264	13.2725
eeeee!!dddd####cccrrrrrrrrrccc333dddd22e	chr12:120587319-120587559(-)$1	240	176	216	13.3839
ccc[ccc[bb$$$$$cccooooooccc666666bb]cccc	chr3:49722615-49722887(-)$1	272	88	128	13.6498
ddddccc[eeeee!!bboooooobb4444eeeeeccc333	chr7:99755608-99755896(-)$1	288	157	197	13.4570
:ccc[ccc"""ccc"""cccmmmmccc22ccc]ccc]ccc	chr7:2255419-2255709(-)$1	290	240	280	13.0175
iiiiiiiii!!bb[ddddoooooodddd]bb]iiiiiiii	chr16:16282591-16282838(-)$1	247	16	56	14.7164
cc[ccc####ccc!!ddddmmmmddddccc4444ccc]cc	chr17:76991100-76991508(-)$1	408	134	174	12.4720
e"""eeeeea!!cccrrrrrrrrrccc22a22eeeee]ee	chr16:50664602-50664887(+)$1	285	117	157	13.5682
b[dddd[ccc[bb!!cccooooooccc]bb]ccc]dddd]	chr12:56552140-56552377(+)$1	237	25	65	15.5956
!!a[bb[dddd####cccnnnnnccc333dddd]bba22c	chr12:122186007-122186353(+)$1	346	124	164	15.1270
eeeee[ffffff[a[cccnnnnnccc]a]ffffffeeeee	chr9:117063289-117063504(+)$1	215	165	205	13.0372
[a[ccc!!eeeee!!cccnnnnnccceeeee22ccca]bb	chr3:49051302-49051555(+)$1	253	29	69	13.3919
gggggggdddd[bb####ccclllccc22bb]dddd22gg	chr2:11772920-11773184(+)$1	264	178	218	12.9985
!bb[ggggggg####ddddmmmmdddd333gggggggbb2	chr1:46768644-46768911(-)$1	267	79	119	13.5129
[a[iiiiiiiiia!!cccooooooccc22a]iiiiiiiii	chr17:1562736-1563012(-)$1	276	107	147	19.4497
d[ccc!!ccc[ccc[ccclllccc]ccc333ccc22cccd	chr1:179198371-179198673(-)$1	302	220	260	14.0009
[eeeee[dddd[bb[cccooooooccc22bb]dddd]eee	chrM:14278-14488(-)$1	210	114	154	16.7857
ffff"""eeeee[a!!cccmmmmccc333a]eeeee]fff	chr12:56552177-56552448(+)$1	271	138	178	15.1832
eeee:==========[bboooooobb==========cccn	chr21:47695017-47695320(-)$1	303	56	96	13.7817
eeeeeeee[ccc"""cccooooooccc333ccceeeee]e	chr11:108141695-108141976(+)$1	281	210	250	18.1739
::==========####cccmmmmccc4444==========	chr6:8435495-8435825(-)$1	330	83	123	15.7004
ccc!!eeeeedddd[cccooooooccc333dddd22eeee	chr2:27565603-27565857(-)$1	254	147	187	16.3541
iiiiiiiii!!a"""cccooooooccc22a22iiiiiiii	chr12:56583109-56583445(-)$1	336	287	327	19.9033
$$$$bb!!dddd[a!!cccnnnnnccc22adddd22bb]g	chr9:117020745-117020974(+)$1	229	177	217	13.5714
ccc####ggggggg!!cccmmmmccc333gggggggcccE	chr16:89623223-89623474(+)$1	251	57	97	14.8054
gggg[ddddabb[ddddoooooodddd22bb]a]dddd]g	chr19:1012256-1012498(-)$1	242	80	120	12.8617
eeee!!ffffff####bboooooobb333ffffffeeeee	chr19:18794468-18794740(+)$1	272	186	226	14.9103
cc!!ggggggg!!bb[ddddllldddd]bb22gggggggc	chr8:27467983-27468203(-)$1	220	13	53	12.9135
ee[ggggggg"""ccc[aooooooa]ccc4444ggggggg	chr19:49497154-49497534(+)$1	380	298	338	16.1228
egggggggbb[ccc[aooooooa]ccc22bb]ggggggg]	chr18:8609563-8609842(+)$1	279	191	231	14.9587
gggggg[dddd$$$$$cccmmmmccc333dddd]gggggg	chr4:9982113-9982369(-)$1	256	153	193	15.1211
$$$$$dddd!!aa!!cccmmmmccc22a]a22dddd333e	chr1:1233376-1233649(-)$1	273	15	55	13.2062
''eeeee!!a[ccc[cccooooooccc]ccc]a22eeeee	chr17:34171853-34172125(+)$1	272	108	148	15.3099
dd$$$$$ccc!!a[a[cccnnnnnccc]aa22ccc4444d	chr17:73872748-73873035(-)$1	287	171	211	14.5465
dd]a]ddddccc[bb[cccnnnnnccc]bb22ccceeeee	chrX:152939489-152939765(-)$1	276	135	175	12.6057
[a!!==========[cccmmmmccc]==========]a]b	chr16:15489956-15490297(+)$1	341	86	126	15.1060
ccccccdddd!!bb[cccooooooccc]bb22dddd]ccc	chr20:409512-409730(+)$1	218	64	104	16.1723
ffff"""eeeee[a!!cccmmmmccc333a]eeeee]fff	chr12:56552290-56552563(+)$1	273	25	65	15.1832
###ccc"""dddd!!cccooooooccc]dddd333ccc44	chr7:77045511-77045795(-)$1	284	67	107	16.4993
""eeeee[dddd"""cccooooooccc22dddd4444eee	chr20:57275976-57276237(+)$1	261	32	72	17.2047
eee!!hhhhhhhh!!cccooooooccc333hhhhhhhh44	chr20:62371147-62371426(+)$1	279	219	259	15.8631
#eeeee"""ddddbb[cccmmmmccc333bb]dddd22ee	chr16:8941561-8941872(+)$1	311	172	212	13.5306
iiiiiiiggggggg[eeeeellleeeee]gggggggdddd	chr5:154135153-154135465(+)$1	312	124	164	11.4038
eeeccc!!gggggggcccooooooccc333gggggggccc	chr11:62370231-62370498(-)$1	267	48	88	17.7629
cc[a[eeeee[ccc[cccnnnnnccc]ccc22eeeee]a2	chr3:122785824-122786159(+)$1	335	209	249	14.2034
eecccggggggg"""cccooooooccc666666ggggggg	chr5:176981009-176981290(-)$1	281	153	193	16.0281
=========eeeee[ccclllccc]eeeee]=========	chr14:23790715-23790923(+)$1	208	15	55	13.0962
[eeeee!!ccc####cccmmmmccc4444ccc]eeeee]b	chr19:46271328-46271585(-)$1	257	162	202	15.0154

#otherMatches

#Seq PSSM
CCACAUCUGCGUGGAGUGCGGGGAGGGCUUCGUGCAGGGC	chr19:56599438-56599708(-)$1	270	115	155	12.8410
UUUUUUUCUGUUCUCUUCUGCCCCAGGGGACUCAGAAGAA	chr17:45015909-45016148(+)$1	239	29	69	14.0242
UACAGAGGUAAUGAAAACUAUUAUGGCACAUUGCUACUAA	chr2:198265344-198265597(-)$1	253	152	192	15.5828
AGAGGAAGUGUUACAUUUUUAUUCUGUUGCAAUUUCUUCU	chr1:39775851-39776155(+)$1	304	9	49	12.8515
GAGGCCCCAGCCCCUGAGCUCCCUGCUCCAGGACACGGCU	chr12:132403061-132403313(+)$1	252	39	79	12.7308
gggcgcggAGCCUGGCACGUACGAGUGGGCCCCGCGGAGC	chr7:73082306-73082595(+)$1	289	224	264	13.2725
CCCAGCUUCCUGUUAUGAAAACCAGCCUCAGCAAGGAUCC	chr12:120587319-120587559(-)$1	240	176	216	13.3839
GAAGUGUGGCAAGAGGGUGGAUCGGCUGGAUCAGCGGCGU	chr3:49722615-49722887(-)$1	272	88	128	13.6498
CCCUGCUACCUCAGGGGGAGCGACCACGGUGAGGAGCUUU	chr7:99755608-99755896(-)$1	288	157	197	13.4570
GGAGGAGCCUCGGUAUUGUGGUCACGCCCACCAGCUGCUC	chr7:2255419-2255709(-)$1	290	240	280	13.0175
GUGGUGUUUGCUGUCCACACUCUGGUGGCCGAGAAUGCUA	chr16:16282591-16282838(-)$1	247	16	56	14.7164
ccgggugggagccaggugcaggggugcggcgggagcuggg	chr17:76991100-76991508(-)$1	408	134	174	12.4720
UCUCGGGCCGGACUCAGACCUGCAGAGCGCAAGGCCCCGA	chr16:50664602-50664887(+)$1	285	117	157	13.5682
CGGAGAGCUGAGCAGUCAAGAUGGUGGGGCCCAGGUCUUG	chr12:56552140-56552377(+)$1	237	25	65	15.5956
ggCACUGGGGUAGAAGGUGGGAGGCUGGGGCCCGGGGAGU	chr12:122186007-122186353(+)$1	346	124	164	15.1270
GGCUCCAGAUUGUCUCUGUGACUCAGUGCCAGucugagcc	chr9:117063289-117063504(+)$1	215	165	205	13.0372
GGUGGCCCUCAGGAUCCUCAGCCAGGCCUGACUGCCCAUG	chr3:49051302-49051555(+)$1	253	29	69	13.3919
CGCAGGACAUCUGGCCUUUCAUUGUGAUCUCUGAUGACUC	chr2:11772920-11773184(+)$1	264	178	218	12.9985
AGCGCCCAUAUGGGGGUUCUGGAGAGCGGGGUGUGGGGUA	chr1:46768644-46768911(-)$1	267	79	119	13.5129
UGGUUCUGGGGACAUUGGUUAUGCCCAUGGUUUCUUAGAA	chr17:1562736-1563012(-)$1	276	107	147	19.4497
CAGCCAGGCCCUCCGGCCGCAGGCGGGACCCGGCGGGGCG	chr1:179198371-179198673(-)$1	302	220	260	14.0009
GGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGG	chrM:14278-14488(-)$1	210	114	154	16.7857
GUUGGAAAGACUGGGGCCCUGCGGGGAAGCGAGUCUGCAG	chr12:56552177-56552448(+)$1	271	138	178	15.1832
UUACCUUUUACUUGACGUCAUUUAGCUCGGGUGAAGAGAA	chr21:47695017-47695320(-)$1	303	56	96	13.7817
UUAAAGUUAUAAAAUAACUGAUGUGUUCUGUUAAGCUUAU	chr11:108141695-108141976(+)$1	281	210	250	18.1739
GAGUGCUUUCCGGGGAGGCGACCGCCGCGGUGGAAAGUGC	chr6:8435495-8435825(-)$1	330	83	123	15.7004
CCGAAGGGCUGCCCAAGUGUAAGGAUUGUGGGGCAUAGCU	chr2:27565603-27565857(-)$1	254	147	187	16.3541
UGGCUCGGCAAGAACUACAAGAAGGUAcgcgggccgggcc	chr12:56583109-56583445(-)$1	336	287	327	19.9033
ACUUGGAACAGGGCCAUCUGCCAGAGACUGCCUGGGCUUU	chr9:117020745-117020974(+)$1	229	177	217	13.5714
CCUGUUCUUUCUAGCUGGCAAACGCCCUUCUGGAAAAGGA	chr16:89623223-89623474(+)$1	251	57	97	14.8054
UCCCCUCCUCCCUCGGGUCUCCUCCUGCUGGUGCGGGACG	chr19:1012256-1012498(-)$1	242	80	120	12.8617
CGCCGACCCUUCAGGGCCGGCGGAGGGAGGGAGGGGGCGC	chr19:18794468-18794740(+)$1	272	186	226	14.9103
CUGCAGGCAGCAGGUGGGCGGGACGCCAGCAGGCUGUCUA	chr8:27467983-27468203(-)$1	220	13	53	12.9135
AUCUUGGCGCAACGGCCGGUUCCGCAGUCCUUGGCGCCAG	chr19:49497154-49497534(+)$1	380	298	338	16.1228
ggccgggggcggcggcggucugggcgcgggcUCCCCGGCG	chr18:8609563-8609842(+)$1	279	191	231	14.9587
GGUGAGUGUGGCUCCCUGGUCAACCGCAUCUGCUCUCAUC	chr4:9982113-9982369(-)$1	256	153	193	15.1211
GGAACAGUCAGGGAGCAGAGAGCUGGACACGGGGCUUGGG	chr1:1233376-1233649(-)$1	273	15	55	13.2062
GAGUGGUGGCGGCUAUGGAGGAGACCGAGGUGGGGGCUAC	chr17:34171853-34172125(+)$1	272	108	148	15.3099
GAGGACCGCAUGGACGAGCUGGGUGCUGGCAUUGCACAGU	chr17:73872748-73873035(-)$1	287	171	211	14.5465
AUGGAGGCUGCUUUCGGGCAAGUGGCCGGGUCAGCCUGUC	chrX:152939489-152939765(-)$1	276	135	175	12.6057
GCGGUCUCGGCCUUCUAUGUCGGUGAGGGGCCGGGAGGGG	chr16:15489956-15490297(+)$1	341	86	126	15.1060
GCACCUGCCCCACUCCAGGUGAUGCUGCAGCAGGGCGAGG	chr20:409512-409730(+)$1	218	64	104	16.1723
GUUGGAAAGACUGGGGCCCUGCGGGGAAGCGAGUCUGCAG	chr12:56552290-56552563(+)$1	273	25	65	15.1832
gagcGGGGACGCGAGGGCGAGGCGGCCACGCGGGGCCGGG	chr7:77045511-77045795(-)$1	284	67	107	16.4993
CUCUGGGAGUUCCCCGCUCAGCUCAGCCCGAGCCUAACCC	chr20:57275976-57276237(+)$1	261	32	72	17.2047
cgUGACGGUGCCCACGCCGCCGCAGGUACCGGGCGCCGGU	chr20:62371147-62371426(+)$1	279	219	259	15.8631
CGGUGGCCAGAGCCGAGGGUCCUCCCACACGUGCUCACCC	chr16:8941561-8941872(+)$1	311	172	212	13.5306
CUCGGGCGCGCCCGGCUUCUCCGGGGGGGCGGGCGCGCAG	chr5:154135153-154135465(+)$1	312	124	164	11.4038
CGCGGCUGCCGGAGCGCCUGAAAUGGUGUAGCUCUGGGCC	chr11:62370231-62370498(-)$1	267	48	88	17.7629
GGCUGCUGCUGGCAAUCUGGGUGAGACUGUGGGGCAGGGA	chr3:122785824-122786159(+)$1	335	209	249	14.2034
CCUUCCCCCGGGUCCGGCGCCGAAGCUUUCUCCCCCGGGG	chr5:176981009-176981290(-)$1	281	153	193	16.0281
GCUccgggccggggcggcggcgccAUCUUGUgcccggggc	chr14:23790715-23790923(+)$1	208	15	55	13.0962
CGCCGGACGAGAAGCGCCGCCUGGCCACACUCACCGGCCU	chr19:46271328-46271585(-)$1	257	162	202	15.0154

#DB
((.....((((((((((.(.....).))))))))))))))	chr19:56599438-56599708(-)$1	1	115	155	12.8410
((((((((((...(((((((...)))))))..))))))))	chr17:45015909-45016148(+)$1	1	29	69	14.0242
(((((((((((((....(......)...))))))).....	chr2:198265344-198265597(-)$1	1	152	192	15.5828
(((((((((((.(((.........))).)).)))))))))	chr1:39775851-39776155(+)$1	1	9	49	12.8515
(((((..((((((((((((.....))).))))....))))	chr12:132403061-132403313(+)$1	1	39	79	12.7308
)..(((((.(((...(((......)))))).)))))((((	chr7:73082306-73082595(+)$1	1	224	264	13.2725
(((((..((((....(((.........)))...))))..)	chr12:120587319-120587559(-)$1	1	176	216	13.3839
(((.(((.((.....(((......)))......)).))))	chr3:49722615-49722887(-)$1	1	88	128	13.6498
(((((((.(((((..((......))....))))))))...	chr7:99755608-99755896(-)$1	1	157	197	13.4570
.(((.(((...(((...(((....)))..))).))).)))	chr7:2255419-2255709(-)$1	1	240	280	13.0175
(((((((((..((.((((......)))).)).))))))))	chr16:16282591-16282838(-)$1	1	16	56	14.7164
((.(((....(((..((((....)))))))....))).))	chr17:76991100-76991508(-)$1	1	134	174	12.4720
(...((((((..(((.........)))..)..))))).))	chr16:50664602-50664887(+)$1	1	117	157	13.5682
(.((((.(((.((..(((......))).)).))).)))).	chr12:56552140-56552377(+)$1	1	25	65	15.5956
..(.((.((((....(((.....)))...)))).)))..)	chr12:122186007-122186353(+)$1	1	124	164	15.1270
(((((.((((((.(.(((.....))).).)))))))))))	chr9:117063289-117063504(+)$1	1	165	205	13.0372
.(.(((..(((((..(((.....))))))))..)))).))	chr3:49051302-49051555(+)$1	1	29	69	13.3919
(((((((((((.((....(((...)))..)).))))..))	chr2:11772920-11773184(+)$1	1	178	218	12.9985
.((.(((((((....((((....))))...))))))))).	chr1:46768644-46768911(-)$1	1	79	119	13.5129
.(.((((((((((..(((......)))..).)))))))))	chr17:1562736-1563012(-)$1	1	107	147	19.4497
(.(((..(((.(((.(((...))).)))...)))..))))	chr1:179198371-179198673(-)$1	1	220	260	14.0009
.(((((.((((.((.(((......)))..)).)))).)))	chrM:14278-14488(-)$1	1	114	154	16.7857
((((...(((((.(..(((....)))...).))))).)))	chr12:56552177-56552448(+)$1	1	138	178	15.1832
)))).((((((((((.((......))))))))))))(((.	chr21:47695017-47695320(-)$1	1	56	96	13.7817
((((((((.(((...(((......)))...)))))))).)	chr11:108141695-108141976(+)$1	1	210	250	18.1739
..((((((((((....(((....)))....))))))))))	chr6:8435495-8435825(-)$1	1	83	123	15.7004
(((..(((((((((.(((......)))...))))..))))	chr2:27565603-27565857(-)$1	1	147	187	16.3541
(((((((((..(...(((......)))..)..))))))))	chr12:56583109-56583445(-)$1	1	287	327	19.9033
....((..((((.(..(((.....)))..)))))..)).)	chr9:117020745-117020974(+)$1	1	177	217	13.5714
(((....(((((((..(((....)))...))))))))))(	chr16:89623223-89623474(+)$1	1	57	97	14.8054
((((.(((((((.((((......))))..)).).)))).)	chr19:1012256-1012498(-)$1	1	80	120	12.8617
((((..((((((....((......))...)))))))))))	chr19:18794468-18794740(+)$1	1	186	226	14.9103
((..(((((((..((.((((...)))).))..))))))))	chr8:27467983-27468203(-)$1	1	13	53	12.9135
((.(((((((...(((.(......).)))....)))))))	chr19:49497154-49497534(+)$1	1	298	338	16.1228
((((((((((.(((.(......).)))..)).))))))).	chr18:8609563-8609842(+)$1	1	191	231	14.9587
((((((.((((.....(((....)))...)))).))))))	chr4:9982113-9982369(-)$1	1	153	193	15.1211
.....((((..((..(((....)))..).)..))))...)	chr1:1233376-1233649(-)$1	1	15	55	13.2062
..(((((..(.(((.(((......))).))).)..)))))	chr17:34171853-34172125(+)$1	1	108	148	15.3099
((.....(((..(.(.(((.....))).))..)))....)	chr17:73872748-73873035(-)$1	1	171	211	14.5465
)).).))))(((.((.(((.....))).))..)))(((((	chrX:152939489-152939765(-)$1	1	135	175	12.6057
.(..((((((((((.(((....))).)))))))))).).)	chr16:15489956-15490297(+)$1	1	86	126	15.1060
((((((((((..((.(((......))).))..)))).)))	chr20:409512-409730(+)$1	1	64	104	16.1723
((((...(((((.(..(((....)))...).))))).)))	chr12:56552290-56552563(+)$1	1	25	65	15.1832
...(((...((((..(((......))).))))...)))..	chr7:77045511-77045795(-)$1	1	67	107	16.4993
..(((((.((((...(((......)))..))))....)))	chr20:57275976-57276237(+)$1	1	32	72	17.2047
(((..((((((((..(((......)))...))))))))..	chr20:62371147-62371426(+)$1	1	219	259	15.8631
.(((((...((((((.(((....)))...)).))))..))	chr16:8941561-8941872(+)$1	1	172	212	13.5306
)))))))(((((((.(((((...))))).)))))))((((	chr5:154135153-154135465(+)$1	1	124	164	11.4038
)))(((..((((((((((......)))...))))))))))	chr11:62370231-62370498(-)$1	1	48	88	17.7629
((.(.(((((.(((.(((.....))).)))..))))).).	chr3:122785824-122786159(+)$1	1	209	249	14.2034
))((((((((((...(((......)))......)))))))	chr5:176981009-176981290(-)$1	1	153	193	16.0281
((((((((((((((.(((...))).))))).)))))))))	chr14:23790715-23790923(+)$1	1	15	55	13.0962
.(((((..(((....(((....)))....))).))))).)	chr19:46271328-46271585(-)$1	1	162	202	15.0154

#PSSM
e : 0.20	c : 0.13	d : 0.09	g : 0.09	[ : 0.09	i : 0.07	= : 0.03	: : 0.03	! : 0.03	f : 0.03	$ : 0.03	# : 0.03	I : 0.01	b : 0.01	' : 0.01	" : 0.01	
e : 0.22	c : 0.15	g : 0.11	d : 0.07	i : 0.07	a : 0.05	= : 0.03	: : 0.03	" : 0.03	[ : 0.03	f : 0.03	$ : 0.03	! : 0.01	b : 0.01	' : 0.01	# : 0.01	
e : 0.22	c : 0.13	g : 0.11	[ : 0.09	$ : 0.07	i : 0.07	= : 0.05	d : 0.03	f : 0.03	! : 0.03	: : 0.01	" : 0.01	a : 0.01	b : 0.01	] : 0.01	# : 0.01	
e : 0.20	c : 0.15	g : 0.13	i : 0.09	$ : 0.07	! : 0.07	= : 0.05	[ : 0.05	d : 0.03	f : 0.03	a : 0.03	" : 0.01	# : 0.01	
e : 0.18	c : 0.16	g : 0.15	i : 0.09	= : 0.07	$ : 0.05	[ : 0.05	! : 0.05	b : 0.03	" : 0.03	d : 0.01	: : 0.01	# : 0.01	] : 0.01	
e : 0.18	g : 0.15	c : 0.15	= : 0.09	i : 0.09	! : 0.07	d : 0.07	$ : 0.03	b : 0.03	" : 0.03	[ : 0.01	# : 0.01	h : 0.01	
g : 0.13	! : 0.13	e : 0.13	= : 0.09	i : 0.09	[ : 0.07	" : 0.07	d : 0.07	c : 0.05	$ : 0.03	# : 0.03	f : 0.03	h : 0.01	
d : 0.16	g : 0.15	e : 0.15	= : 0.11	! : 0.09	i : 0.07	c : 0.07	[ : 0.05	f : 0.03	" : 0.03	# : 0.01	h : 0.01	
d : 0.20	g : 0.15	e : 0.15	= : 0.11	i : 0.07	c : 0.07	" : 0.05	[ : 0.03	b : 0.03	f : 0.03	# : 0.01	! : 0.01	h : 0.01	
d : 0.18	g : 0.15	e : 0.15	c : 0.13	= : 0.09	b : 0.05	! : 0.05	a : 0.05	f : 0.03	" : 0.01	# : 0.01	i : 0.01	h : 0.01	
d : 0.18	g : 0.13	e : 0.11	! : 0.11	c : 0.09	[ : 0.09	= : 0.07	" : 0.05	b : 0.03	f : 0.03	$ : 0.01	i : 0.01	h : 0.01	
c : 0.16	e : 0.11	g : 0.09	d : 0.09	= : 0.07	# : 0.07	! : 0.07	[ : 0.05	b : 0.05	" : 0.03	$ : 0.03	f : 0.03	a : 0.03	i : 0.01	h : 0.01	
c : 0.15	" : 0.13	# : 0.11	[ : 0.11	b : 0.09	g : 0.07	d : 0.07	= : 0.05	e : 0.05	a : 0.05	$ : 0.03	! : 0.01	h : 0.01	
c : 0.15	! : 0.15	# : 0.13	b : 0.11	" : 0.09	g : 0.07	a : 0.07	= : 0.05	d : 0.05	$ : 0.03	[ : 0.03	e : 0.01	
! : 0.22	[ : 0.20	# : 0.15	" : 0.11	c : 0.05	d : 0.05	b : 0.05	= : 0.03	g : 0.03	$ : 0.03	a : 0.01	
c : 0.49	d : 0.09	[ : 0.09	# : 0.07	! : 0.07	r : 0.03	= : 0.01	g : 0.01	b : 0.01	" : 0.01	a : 0.01	$ : 0.01	e : 0.01	
c : 0.66	d : 0.09	b : 0.05	# : 0.03	r : 0.03	= : 0.01	g : 0.01	" : 0.01	[ : 0.01	o : 0.01	e : 0.01	
c : 0.67	d : 0.07	o : 0.05	a : 0.03	r : 0.03	b : 0.03	[ : 0.01	g : 0.01	# : 0.01	e : 0.01	
o : 0.43	c : 0.22	n : 0.07	r : 0.05	d : 0.05	m : 0.05	l : 0.03	a : 0.01	g : 0.01	e : 0.01	
o : 0.43	m : 0.20	n : 0.16	r : 0.05	c : 0.03	l : 0.03	g : 0.01	d : 0.01	e : 0.01	
o : 0.43	m : 0.22	n : 0.16	l : 0.09	r : 0.05	c : 0.01	
o : 0.43	m : 0.22	n : 0.16	l : 0.07	r : 0.05	c : 0.03	
o : 0.41	n : 0.16	m : 0.16	c : 0.09	l : 0.07	r : 0.05	a : 0.01	
o : 0.37	c : 0.28	n : 0.09	d : 0.07	r : 0.05	g : 0.01	b : 0.01	m : 0.01	l : 0.01	] : 0.01	e : 0.01	
c : 0.69	d : 0.09	a : 0.05	b : 0.05	] : 0.03	g : 0.01	r : 0.01	e : 0.01	
c : 0.66	d : 0.09	] : 0.05	4 : 0.03	b : 0.03	e : 0.03	g : 0.01	3 : 0.01	r : 0.01	2 : 0.01	
c : 0.49	3 : 0.15	d : 0.09	= : 0.05	4 : 0.05	e : 0.05	] : 0.03	g : 0.01	r : 0.01	2 : 0.01	
3 : 0.24	2 : 0.18	] : 0.16	c : 0.11	= : 0.05	4 : 0.05	e : 0.05	6 : 0.03	a : 0.03	g : 0.01	d : 0.01	
3 : 0.24	2 : 0.18	c : 0.11	b : 0.09	] : 0.07	= : 0.05	4 : 0.05	g : 0.03	d : 0.03	6 : 0.03	e : 0.03	a : 0.01	
b : 0.20	a : 0.15	c : 0.13	3 : 0.11	d : 0.09	g : 0.07	= : 0.05	e : 0.05	6 : 0.03	f : 0.03	4 : 0.03	
2 : 0.16	] : 0.13	d : 0.13	b : 0.11	g : 0.09	= : 0.07	c : 0.07	3 : 0.03	6 : 0.03	e : 0.03	4 : 0.03	f : 0.03	h : 0.01	
2 : 0.18	d : 0.13	] : 0.13	= : 0.09	g : 0.09	c : 0.09	e : 0.07	i : 0.03	6 : 0.03	4 : 0.03	f : 0.03	3 : 0.01	h : 0.01	
d : 0.18	g : 0.13	= : 0.11	e : 0.11	c : 0.09	i : 0.07	4 : 0.05	3 : 0.03	6 : 0.03	] : 0.03	f : 0.03	a : 0.03	2 : 0.01	h : 0.01	
g : 0.16	e : 0.15	d : 0.15	= : 0.11	c : 0.11	i : 0.07	4 : 0.05	] : 0.05	f : 0.03	b : 0.01	2 : 0.01	3 : 0.01	h : 0.01	
g : 0.18	e : 0.13	d : 0.13	= : 0.11	c : 0.11	i : 0.07	2 : 0.07	4 : 0.03	b : 0.03	f : 0.03	] : 0.01	3 : 0.01	h : 0.01	
e : 0.20	g : 0.16	d : 0.15	= : 0.11	c : 0.09	i : 0.07	4 : 0.05	2 : 0.05	> : 0.01	] : 0.01	b : 0.01	h : 0.01	
e : 0.18	c : 0.13	g : 0.13	d : 0.11	] : 0.11	i : 0.07	= : 0.05	a : 0.03	2 : 0.03	4 : 0.03	> : 0.01	b : 0.01	3 : 0.01	h : 0.01	
e : 0.18	c : 0.15	d : 0.09	g : 0.09	i : 0.07	2 : 0.07	] : 0.07	= : 0.05	3 : 0.03	b : 0.03	f : 0.03	> : 0.01	4 : 0.01	a : 0.01	h : 0.01	
e : 0.18	c : 0.15	g : 0.11	] : 0.09	d : 0.07	i : 0.07	= : 0.05	4 : 0.05	2 : 0.03	3 : 0.03	b : 0.03	f : 0.03	> : 0.01	a : 0.01	
e : 0.24	c : 0.13	g : 0.11	d : 0.09	i : 0.07	= : 0.05	b : 0.05	] : 0.03	2 : 0.03	f : 0.03	4 : 0.03	> : 0.01	3 : 0.01	n : 0.01	E : 0.01	

#score	776.568499841524
#seq	53
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_transcript_m2_run2.txt

#BEAR
f"""eeeeeooooooeeeee333f	chr1:35657871-35658121(-)$1	250	90	114	16.4860
$$$$$eeeeennnnneeeee22gg	chr16:2140258-2140489(-)$1	231	178	202	11.3331
f####ddddoooooodddd333ff	chr12:113734886-113735161(+)$1	275	11	35	13.2927
dd!!eeeeeooooooeeeee22dd	chr6:90434826-90435077(-)$1	251	65	89	15.1927
d[bbddddaooooooa]dddd22b	chr4:79236721-79236984(+)$1	263	130	154	11.0075
gggg[ddddooooooddddggggg	chr16:58608412-58608640(-)$1	228	133	157	11.6792
####eeeeeooooooeeeee22gg	chr20:61598587-61598811(+)$1	224	147	171	16.1322
c!!eeeee[ammmma]eeeee22c	chr20:62590182-62590423(-)$1	241	155	179	10.7460
$$$$eeeeeooooooeeeee4444	chr2:198268272-198268532(-)$1	260	190	214	15.2523
bb!!eeeeeammmma]eeeee22b	chrX:20284862-20285113(-)$1	251	100	124	10.6581
ddgggggggoooooogggggggFF	chr9:95042968-95043247(-)$1	279	112	136	10.4132
eee!!eeeeennnnneeeee22ee	chr16:18863603-18863846(-)$1	243	209	233	11.1503
:gggggggaooooooa]ggggggg	chr9:117073451-117073666(+)$1	215	17	41	10.6136
gg####eeeeemmmmeeeee333g	chr16:90033121-90033399(+)$1	278	40	64	10.6683
eeeeee[bboooooobbeeeeeff	chr1:52703362-52703644(+)$1	282	173	197	10.5390
a!!ffffffooooooffffff22a	chr1:39851149-39851460(+)$1	311	186	210	11.4336
cc!!eeeeeooooooeeeee333c	chr2:130877570-130877834(-)$1	264	186	210	16.2255
=========oooooo=========	chr4:83778042-83778313(-)$1	271	111	135	12.1496
ee!!eeeeeooooooeeeeeeeee	chr16:18853513-18853769(-)$1	256	180	204	14.7149
##gggggggooooooggggggg22	chr3:187447408-187447670(-)$1	262	177	201	11.6937
h[ccc[a[aooooooa]a]ccc]h	chr10:123844165-123844418(+)$1	253	149	173	10.6610
ddd[eeeeeooooooeeeee]ddd	chr10:93743856-93744077(+)$1	221	105	129	13.8615
b:::eeeeeooooooeeeeeeeee	chr6:43738587-43738850(+)$1	263	202	226	11.1775
cc!!eeeeeooooooeeeee5555	chr2:32670582-32670816(+)$1	234	128	152	12.5441
!!eeeee[aooooooa]eeeeeff	chr18:14221695-14222047(+)$1	352	16	40	12.8916
e####ddddoooooodddd333ee	chr19:12811909-12812143(-)$1	234	13	37	13.4110
gg[ffffffooooooffffff]gg	chr6:90428126-90428369(-)$1	243	84	108	10.8413
iiiiiiiiiooooooiiiiiiiii	chr6:90402743-90402968(-)$1	225	65	89	11.5015
dd!!eeeeeooooooeeeeedddd	chr4:3214208-3214447(+)$1	239	140	164	14.2379
c[a[eeeeennnnneeeee]a]cc	chr9:95993200-95993471(+)$1	271	235	259	11.2940
eeeee[cccooooooccc]eeeee	chr16:2813419-2813660(+)$1	241	215	239	10.5395
ccc[eeeeeooooooeeeee]ccc	chr2:15701211-15701451(-)$1	240	183	207	14.5951
eee[eeeeeooooooeeeee22ee	chr16:53283842-53284079(+)$1	237	166	190	14.7881
iiiiiiiiiooooooiiiiiiiii	chr1:12320678-12320954(+)$1	276	50	74	11.5015
d"""a[eeeeellleeeee]a]dd	chr8:8235106-8235369(-)$1	263	67	91	10.3113
d####eeeeemmmmeeeee4444d	chr5:139886319-139886551(+)$1	232	183	207	10.6656
[bb[eeeeeooooooeeeee]bb]	chr6:158833996-158834242(+)$1	246	151	175	13.5195
cc!!eeeeennnnneeeeeccc]b	chr19:42778175-42778449(+)$1	274	173	197	10.9755
ggg!!ddddoooooodddd]gggg	chr2:219553331-219553586(+)$1	255	182	206	12.1670
""ccceeeeennnnneeeee]ccc	chr1:19473274-19473527(-)$1	253	210	234	10.6311
b!!a[ddddoooooodddd]a22b	chr9:117072941-117073196(+)$1	255	42	66	12.4854
ccc[eeeeennnnneeeeeccc]g	chr4:78978999-78979336(+)$1	337	225	249	10.6544
''''eeeeeooooooeeeee8888	chr5:14304481-14304753(+)$1	272	56	80	11.3997
e[gggggggooooooggggggg]e	chr1:245019795-245020027(-)$1	232	60	84	11.8675
e"""eeeeeooooooeeeeeeeee	chr12:26868978-26869244(-)$1	266	29	53	15.2383
f$$$$$ddddoooooodddd22ff	chr20:36640488-36640748(-)$1	260	232	256	10.4393
cc!!eeeeeooooooeeeee22cc	chr10:19612843-19613132(+)$1	289	80	104	15.6256
ee[dddd[aooooooa]dddd22e	chr6:31931161-31931437(+)$1	276	34	58	11.4750
####eeeeeooooooeeeeeffff	chr3:49050515-49050772(+)$1	257	14	38	15.0953
i"""eeeeennnnneeeeeiiiii	chr9:38068704-38068961(-)$1	257	205	229	11.7484

#otherMatches

#Seq PSSM
CCAAAGGCGGCAAAAUGCCUGGCG	chr1:35657871-35658121(-)$1	250	90	114	16.4860
GGAUGGGCCUCAGCAAGGUCAAGG	chr16:2140258-2140489(-)$1	231	178	202	11.3331
GAGAUUUCCAUAGCAGGAGCGGUU	chr12:113734886-113735161(+)$1	275	11	35	13.2927
AUGAAAAGACGAAGAUUUUUGGGU	chr6:90434826-90435077(-)$1	251	65	89	15.1927
GGCGGGUACUAUGCUGAUGCCACU	chr4:79236721-79236984(+)$1	263	130	154	11.0075
AAGUACAUACAUGAAUAUGACUUU	chr16:58608412-58608640(-)$1	228	133	157	11.6792
CUCCUGGACUUGCCUGUUCAACCU	chr20:61598587-61598811(+)$1	224	147	171	16.1322
AAAGGCAGCCUUCUGUCUGCCAAU	chr20:62590182-62590423(-)$1	241	155	179	10.7460
ACUUGAUGACUUAGUUCGUCCAUA	chr2:198268272-198268532(-)$1	260	190	214	15.2523
CCCGGUGCCCAGCGGAGGCGCGAG	chrX:20284862-20285113(-)$1	251	100	124	10.6581
AAGAAGAUGAAACUGUAUCUUUAG	chr9:95042968-95043247(-)$1	279	112	136	10.4132
AUGUUUAAAUGUGUAGUUUAUUUA	chr16:18863603-18863846(-)$1	243	209	233	11.1503
UUUUCACCCGGGAAAGAGGUGAGA	chr9:117073451-117073666(+)$1	215	17	41	10.6136
AGGUGUGCAGCAGGGGCUGUGUGC	chr16:90033121-90033399(+)$1	278	40	64	10.6683
UGUUGUAGCCGUCAUGCAUAACUG	chr1:52703362-52703644(+)$1	282	173	197	10.5390
GGACUUAUCAGAGAAGGUGAGGGC	chr1:39851149-39851460(+)$1	311	186	210	11.4336
CUGGUGGGGUAAAGUCCCCAGAAA	chr2:130877570-130877834(-)$1	264	186	210	16.2255
UGGCCGAUGCCAUUAUAUUGGCCA	chr4:83778042-83778313(-)$1	271	111	135	12.1496
AGCCAAAGAAACUUCUCUUUCUUG	chr16:18853513-18853769(-)$1	256	180	204	14.7149
AGUGCCAGGCCAGUCCCUGGUGAG	chr3:187447408-187447670(-)$1	262	177	201	11.6937
GUGAUGCGUCGAGACAGGAAUUUC	chr10:123844165-123844418(+)$1	253	149	173	10.6610
GUAAAGCUGUUACCUUAGCUGUGC	chr10:93743856-93744077(+)$1	221	105	129	13.8615
CGGGCUCAUGGACGGGUGAGGCGG	chr6:43738587-43738850(+)$1	263	202	226	11.1775
CCAAUGGAGGCUUUACUUCAGACA	chr2:32670582-32670816(+)$1	234	128	152	12.5441
GAUAUUUCCGAAAUAGAAGAUAAG	chr18:14221695-14222047(+)$1	352	16	40	12.8916
CUGCAGCUGGCAAGUCAGCACUGU	chr19:12811909-12812143(-)$1	234	13	37	13.4110
UGUUAAGGGAUAGCCUCCUUAUCA	chr6:90428126-90428369(-)$1	243	84	108	10.8413
UGACAUAAUUGGCAUAUUGUGUUA	chr6:90402743-90402968(-)$1	225	65	89	11.5015
GGUGGUGGUCUCCAAACUGCCCAG	chr4:3214208-3214447(+)$1	239	140	164	14.2379
UGGGCAGCAGUGAGUGCUGGCGAG	chr9:95993200-95993471(+)$1	271	235	259	11.2940
UGUGCAGGAGUAAAAUCUAGCACA	chr16:2813419-2813660(+)$1	241	215	239	10.5395
GCUUCGUGGGUAGAGCCACGUAGC	chr2:15701211-15701451(-)$1	240	183	207	14.5951
CAUUUUUUAAAAAAGUAAAAUUGU	chr16:53283842-53284079(+)$1	237	166	190	14.7881
CUUUUGUUUUCACCCAAACAGGAG	chr1:12320678-12320954(+)$1	276	50	74	11.5015
GCUUCCGCCAGAAACUGGCUGCCU	chr8:8235106-8235369(-)$1	263	67	91	10.3113
UGGAGGAUAUGUUAAUAUCAUUAA	chr5:139886319-139886551(+)$1	232	183	207	10.6656
GCGGACGGAGGCAUAUUCGUGUGG	chr6:158833996-158834242(+)$1	246	151	175	13.5195
UGCAGCGGGACUCACCUGUUAUUG	chr19:42778175-42778449(+)$1	274	173	197	10.9755
UGUAUUCCUUCUGCCGGGAGGCAG	chr2:219553331-219553586(+)$1	255	182	206	12.1670
GAACUUGGCCUCUGUGGCCGUGGU	chr1:19473274-19473527(-)$1	253	210	234	10.6311
CUCGUGGCCACUCUAGGCCUCACG	chr9:117072941-117073196(+)$1	255	42	66	12.4854
CUCAUCAUUCCGAAGGUGAGAGAG	chr4:78978999-78979336(+)$1	337	225	249	10.6544
UGAUAGAAAUAAUCUUUUUUUAAC	chr5:14304481-14304753(+)$1	272	56	80	11.3997
UAAUGUUUAGGGUUGUAAACAUAA	chr1:245019795-245020027(-)$1	232	60	84	11.8675
CCAUGCAGUGUCUCAAUUGUGAUU	chr12:26868978-26869244(-)$1	266	29	53	15.2383
AAAAUUGGUAUUUGGUUACCUGUC	chr20:36640488-36640748(-)$1	260	232	256	10.4393
AAAUUUGGUGACACGGCUGACAUU	chr10:19612843-19613132(+)$1	289	80	104	15.6256
GAAGCGUCGUCAGAUCUAUGUGAU	chr6:31931161-31931437(+)$1	276	34	58	11.4750
ACCAGGUCUGCUCAAGGACCCUGG	chr3:49050515-49050772(+)$1	257	14	38	15.0953
ggacgccccccgccggggccgggg	chr9:38068704-38068961(-)$1	257	205	229	11.7484

#DB
(...(((((......)))))...)	chr1:35657871-35658121(-)$1	1	90	114	16.4860
.....(((((.....)))))..))	chr16:2140258-2140489(-)$1	1	178	202	11.3331
(....((((......))))...))	chr12:113734886-113735161(+)$1	1	11	35	13.2927
((..(((((......)))))..))	chr6:90434826-90435077(-)$1	1	65	89	15.1927
(.(((((((......).))))..)	chr4:79236721-79236984(+)$1	1	130	154	11.0075
((((.((((......)))))))))	chr16:58608412-58608640(-)$1	1	133	157	11.6792
....(((((......)))))..))	chr20:61598587-61598811(+)$1	1	147	171	16.1322
(..(((((.(....).)))))..)	chr20:62590182-62590423(-)$1	1	155	179	10.7460
....(((((......)))))....	chr2:198268272-198268532(-)$1	1	190	214	15.2523
((..((((((....).)))))..)	chrX:20284862-20285113(-)$1	1	100	124	10.6581
))(((((((......)))))))))	chr9:95042968-95043247(-)$1	1	112	136	10.4132
(((..(((((.....)))))..))	chr16:18863603-18863846(-)$1	1	209	233	11.1503
.((((((((......).)))))))	chr9:117073451-117073666(+)$1	1	17	41	10.6136
((....(((((....)))))...)	chr16:90033121-90033399(+)$1	1	40	64	10.6683
)(((((.((......)))))))((	chr1:52703362-52703644(+)$1	1	173	197	10.5390
(..((((((......))))))..)	chr1:39851149-39851460(+)$1	1	186	210	11.4336
((..(((((......)))))...)	chr2:130877570-130877834(-)$1	1	186	210	16.2255
(((((((((......)))))))))	chr4:83778042-83778313(-)$1	1	111	135	12.1496
((..(((((......)))))))))	chr16:18853513-18853769(-)$1	1	180	204	14.7149
..(((((((......)))))))..	chr3:187447408-187447670(-)$1	1	177	201	11.6937
(.(((.(.(......).).))).)	chr10:123844165-123844418(+)$1	1	149	173	10.6610
(((.(((((......))))).)))	chr10:93743856-93744077(+)$1	1	105	129	13.8615
)...(((((......)))))((((	chr6:43738587-43738850(+)$1	1	202	226	11.1775
((..(((((......)))))....	chr2:32670582-32670816(+)$1	1	128	152	12.5441
..(((((.(......).)))))))	chr18:14221695-14222047(+)$1	1	16	40	12.8916
(....((((......))))...))	chr19:12811909-12812143(-)$1	1	13	37	13.4110
((.((((((......)))))).))	chr6:90428126-90428369(-)$1	1	84	108	10.8413
(((((((((......)))))))))	chr6:90402743-90402968(-)$1	1	65	89	11.5015
((..(((((......)))))))))	chr4:3214208-3214447(+)$1	1	140	164	14.2379
(.(.(((((.....))))).).))	chr9:95993200-95993471(+)$1	1	235	259	11.2940
(((((.(((......))).)))))	chr16:2813419-2813660(+)$1	1	215	239	10.5395
(((.(((((......))))).)))	chr2:15701211-15701451(-)$1	1	183	207	14.5951
(((.(((((......)))))..))	chr16:53283842-53284079(+)$1	1	166	190	14.7881
(((((((((......)))))))))	chr1:12320678-12320954(+)$1	1	50	74	11.5015
(...(.(((((...))))).).))	chr8:8235106-8235369(-)$1	1	67	91	10.3113
(....(((((....)))))....)	chr5:139886319-139886551(+)$1	1	183	207	10.6656
.((.(((((......))))).)).	chr6:158833996-158834242(+)$1	1	151	175	13.5195
((..(((((.....)))))))).)	chr19:42778175-42778449(+)$1	1	173	197	10.9755
(((..((((......)))).))))	chr2:219553331-219553586(+)$1	1	182	206	12.1670
..((((((((.....))))).)))	chr1:19473274-19473527(-)$1	1	210	234	10.6311
(..(.((((......)))).)..)	chr9:117072941-117073196(+)$1	1	42	66	12.4854
(((.(((((.....)))))))).)	chr4:78978999-78979336(+)$1	1	225	249	10.6544
....(((((......)))))....	chr5:14304481-14304753(+)$1	1	56	80	11.3997
(.(((((((......))))))).)	chr1:245019795-245020027(-)$1	1	60	84	11.8675
(...(((((......)))))))))	chr12:26868978-26869244(-)$1	1	29	53	15.2383
(.....((((......))))..))	chr20:36640488-36640748(-)$1	1	232	256	10.4393
((..(((((......)))))..))	chr10:19612843-19613132(+)$1	1	80	104	15.6256
((.((((.(......).))))..)	chr6:31931161-31931437(+)$1	1	34	58	11.4750
....(((((......)))))))))	chr3:49050515-49050772(+)$1	1	14	38	15.0953
(...(((((.....))))))))))	chr9:38068704-38068961(-)$1	1	205	229	11.7484

#PSSM
e : 0.18	c : 0.16	d : 0.14	g : 0.08	f : 0.06	# : 0.06	b : 0.06	i : 0.06	$ : 0.04	: : 0.02	a : 0.02	= : 0.02	h : 0.02	! : 0.02	[ : 0.02	" : 0.02	' : 0.02	
# : 0.12	e : 0.12	c : 0.12	" : 0.10	g : 0.10	d : 0.08	[ : 0.08	! : 0.08	$ : 0.06	b : 0.04	i : 0.04	= : 0.02	: : 0.02	' : 0.02	
! : 0.21	# : 0.12	g : 0.12	e : 0.10	" : 0.08	c : 0.08	$ : 0.06	b : 0.04	[ : 0.04	i : 0.04	= : 0.02	d : 0.02	: : 0.02	a : 0.02	' : 0.02	
! : 0.19	# : 0.12	[ : 0.12	g : 0.10	" : 0.08	e : 0.08	$ : 0.06	f : 0.04	c : 0.04	i : 0.04	b : 0.02	= : 0.02	: : 0.02	a : 0.02	' : 0.02	d : 0.02	
e : 0.52	# : 0.08	g : 0.08	$ : 0.04	d : 0.04	[ : 0.04	! : 0.04	f : 0.04	c : 0.04	i : 0.04	= : 0.02	a : 0.02	
e : 0.58	d : 0.14	g : 0.08	[ : 0.06	f : 0.04	i : 0.04	# : 0.02	= : 0.02	$ : 0.02	
e : 0.60	d : 0.16	g : 0.08	f : 0.04	i : 0.04	[ : 0.02	= : 0.02	a : 0.02	c : 0.02	
e : 0.58	d : 0.14	g : 0.08	[ : 0.06	f : 0.04	i : 0.04	b : 0.02	= : 0.02	c : 0.02	
e : 0.56	d : 0.12	a : 0.10	g : 0.06	f : 0.04	i : 0.04	[ : 0.02	b : 0.02	= : 0.02	c : 0.02	
o : 0.74	e : 0.12	n : 0.08	a : 0.04	d : 0.02	
o : 0.76	n : 0.14	m : 0.06	e : 0.04	
o : 0.76	n : 0.14	m : 0.08	l : 0.02	
o : 0.76	n : 0.14	m : 0.08	l : 0.02	
o : 0.76	n : 0.14	m : 0.08	l : 0.02	
o : 0.76	e : 0.12	n : 0.06	a : 0.04	m : 0.02	
e : 0.54	d : 0.10	a : 0.10	g : 0.06	] : 0.04	f : 0.04	i : 0.04	b : 0.02	= : 0.02	c : 0.02	o : 0.02	
e : 0.58	d : 0.12	] : 0.10	g : 0.06	f : 0.04	i : 0.04	b : 0.02	= : 0.02	c : 0.02	
e : 0.62	d : 0.16	g : 0.08	f : 0.04	i : 0.04	= : 0.02	a : 0.02	c : 0.02	
e : 0.62	d : 0.16	g : 0.08	f : 0.04	] : 0.04	i : 0.04	= : 0.02	
e : 0.52	g : 0.10	] : 0.08	d : 0.06	c : 0.06	i : 0.06	3 : 0.04	f : 0.04	= : 0.02	4 : 0.02	
e : 0.16	2 : 0.14	g : 0.12	3 : 0.10	] : 0.08	d : 0.06	f : 0.06	c : 0.06	i : 0.06	a : 0.06	4 : 0.04	= : 0.02	5 : 0.02	8 : 0.02	
2 : 0.25	g : 0.12	e : 0.12	3 : 0.10	c : 0.10	] : 0.06	i : 0.06	4 : 0.04	d : 0.04	= : 0.02	5 : 0.02	b : 0.02	8 : 0.02	f : 0.02	
2 : 0.14	e : 0.14	g : 0.12	f : 0.10	d : 0.08	] : 0.08	c : 0.08	3 : 0.06	i : 0.06	4 : 0.04	F : 0.02	= : 0.02	5 : 0.02	b : 0.02	8 : 0.02	
e : 0.18	g : 0.16	f : 0.12	c : 0.12	d : 0.10	b : 0.08	i : 0.06	4 : 0.02	F : 0.02	a : 0.02	= : 0.02	2 : 0.02	h : 0.02	5 : 0.02	] : 0.02	8 : 0.02	

#score	619.5283286232823
#seq	50
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_UTR_m3_run2.txt

#BEAR
[fffffftttttttttttff	chr9:140347334-140347564(-)$1	230	97	117	16.6642
[ffffffqqqqqqqqfffff	chr7:150777605-150777858(-)$1	253	16	36	8.2370
fffffftttttttttttfff	chr9:140347388-140347614(-)$1	226	148	168	16.1551
H:eeeeesssssssssseee	chr16:67976993-67977279(-)$1	286	101	121	11.0488
hhhhhhhttttttttttthh	chr19:18668655-18668997(+)$1	342	232	252	12.3867
!!dddduuuuuuuuuuuudd	chr11:70265862-70266136(+)$1	274	223	243	14.1735
[ffffffssssssssssfff	chr4:39460321-39460585(-)$1	264	53	73	14.8408
[ffffffqqqqqqqqfffff	chr20:56140285-56140521(+)$1	236	45	65	8.2370
gggggggssssssssssggg	chr2:128180682-128180991(+)$1	309	168	188	12.9026
!!bbcccrrrrrrrrrccc]	chr11:67810675-67810936(+)$1	261	228	248	9.4053
ddeeeeesssssssssseee	chr7:150774541-150774786(-)$1	245	192	212	12.1882
bffffff[aooooooa]fff	chr9:116138863-116139110(-)$1	247	125	145	6.3621
++ddddtttttttttttddd	chr1:156351927-156352197(+)$1	270	194	214	12.5150
[ffffffvvvvvvvvvvvvv	chr1:145441068-145441318(+)$1	250	121	141	14.8484
fffffftttttttttttfff	chr9:140347364-140347588(-)$1	224	122	142	16.1551
[ffffffxxxxxxxxxxxxx	chr16:23505445-23505722(-)$1	277	18	38	11.9999
fffffwwwwwwwwwwwwwwf	chr14:35099049-35099318(-)$1	269	241	261	15.5355
ffffffbbqqqqqqqqbb]f	chr5:179050391-179050697(-)$1	306	242	262	7.0754
ggg[ddddrrrrrrrrrddd	chr16:88724086-88724328(-)$1	242	160	180	8.8040

#otherMatches

#Seq PSSM
AGGACUCCGCCCCAACCCGA	chr9:140347334-140347564(-)$1	230	97	117	16.6642
GCGGGGGGAACCCGGCCCCC	chr7:150777605-150777858(-)$1	253	16	36	8.2370
GGACUCCGCCCCAACCCGAG	chr9:140347388-140347614(-)$1	226	148	168	16.1551
GGGUGACGGGGGUAAGGGUC	chr16:67976993-67977279(-)$1	286	101	121	11.0488
CGUCUGCUCAAUGGAUACGC	chr19:18668655-18668997(+)$1	342	232	252	12.3867
AAUGCCCAACUUGAAAACGG	chr11:70265862-70266136(+)$1	274	223	243	14.1735
UCUUUGCUGCGUCUACUGCG	chr4:39460321-39460585(-)$1	264	53	73	14.8408
AAUGUCAACAAUCAAUGGCG	chr20:56140285-56140521(+)$1	236	45	65	8.2370
GGUGAGCUUCCUCAAUUGCU	chr2:128180682-128180991(+)$1	309	168	188	12.9026
CCGCGGCUUCCUCAUUGCCA	chr11:67810675-67810936(+)$1	261	228	248	9.4053
gggcccugaagcagcagagg	chr7:150774541-150774786(-)$1	245	192	212	12.1882
CAGAGCCCCAAACCCGCGGU	chr9:116138863-116139110(-)$1	247	125	145	6.3621
aauuggaguuaacaaaacca	chr1:156351927-156352197(+)$1	270	194	214	12.5150
CCUGCAUCCUCAACAACAAU	chr1:145441068-145441318(+)$1	250	121	141	14.8484
GGACUCCGCCCCAACCCGAG	chr9:140347364-140347588(-)$1	224	122	142	16.1551
UGUAGCCCCACACAUGCGCC	chr16:23505445-23505722(-)$1	277	18	38	11.9999
GACCCUCCUUCCCCAUCCUG	chr14:35099049-35099318(-)$1	269	241	261	15.5355
CCGACUCUAUUGUGUGAGAA	chr5:179050391-179050697(-)$1	306	242	262	7.0754
CCACCUCAAUGACCAGCUGG	chr16:88724086-88724328(-)$1	242	160	180	8.8040

#DB
.((((((...........))	chr9:140347334-140347564(-)$1	1	97	117	16.6642
.((((((........)))))	chr7:150777605-150777858(-)$1	1	16	36	8.2370
((((((...........)))	chr9:140347388-140347614(-)$1	1	148	168	16.1551
(.(((((..........)))	chr16:67976993-67977279(-)$1	1	101	121	11.0488
(((((((...........))	chr19:18668655-18668997(+)$1	1	232	252	12.3867
..((((............))	chr11:70265862-70266136(+)$1	1	223	243	14.1735
.((((((..........)))	chr4:39460321-39460585(-)$1	1	53	73	14.8408
.((((((........)))))	chr20:56140285-56140521(+)$1	1	45	65	8.2370
(((((((..........)))	chr2:128180682-128180991(+)$1	1	168	188	12.9026
..(((((.........))).	chr11:67810675-67810936(+)$1	1	228	248	9.4053
))(((((..........)))	chr7:150774541-150774786(-)$1	1	192	212	12.1882
(((((((.(......).)))	chr9:116138863-116139110(-)$1	1	125	145	6.3621
..((((...........)))	chr1:156351927-156352197(+)$1	1	194	214	12.5150
.((((((.............	chr1:145441068-145441318(+)$1	1	121	141	14.8484
((((((...........)))	chr9:140347364-140347588(-)$1	1	122	142	16.1551
.((((((.............	chr16:23505445-23505722(-)$1	1	18	38	11.9999
(((((..............)	chr14:35099049-35099318(-)$1	1	241	261	15.5355
((((((((........)).)	chr5:179050391-179050697(-)$1	1	242	262	7.0754
(((.((((.........)))	chr16:88724086-88724328(-)$1	1	160	180	8.8040

#PSSM
[ : 0.31	f : 0.21	! : 0.10	g : 0.10	H : 0.05	h : 0.05	d : 0.05	b : 0.05	+ : 0.05	
f : 0.57	! : 0.10	g : 0.10	: : 0.05	h : 0.05	d : 0.05	+ : 0.05	
f : 0.57	e : 0.10	d : 0.10	g : 0.10	h : 0.05	b : 0.05	
f : 0.57	e : 0.10	d : 0.10	h : 0.05	g : 0.05	b : 0.05	[ : 0.05	
f : 0.57	d : 0.15	e : 0.10	h : 0.05	g : 0.05	c : 0.05	
f : 0.52	d : 0.15	e : 0.10	h : 0.05	g : 0.05	c : 0.05	w : 0.05	
f : 0.36	t : 0.15	e : 0.10	h : 0.05	u : 0.05	g : 0.05	c : 0.05	w : 0.05	b : 0.05	d : 0.05	
t : 0.26	s : 0.21	q : 0.10	u : 0.05	r : 0.05	[ : 0.05	v : 0.05	x : 0.05	w : 0.05	b : 0.05	d : 0.05	
t : 0.26	s : 0.21	q : 0.15	r : 0.10	u : 0.05	a : 0.05	v : 0.05	x : 0.05	w : 0.05	
t : 0.26	s : 0.21	q : 0.15	r : 0.10	u : 0.05	o : 0.05	v : 0.05	x : 0.05	w : 0.05	
t : 0.26	s : 0.21	q : 0.15	r : 0.10	u : 0.05	o : 0.05	v : 0.05	x : 0.05	w : 0.05	
t : 0.26	s : 0.21	q : 0.15	r : 0.10	u : 0.05	o : 0.05	v : 0.05	x : 0.05	w : 0.05	
t : 0.26	s : 0.21	q : 0.15	r : 0.10	u : 0.05	o : 0.05	v : 0.05	x : 0.05	w : 0.05	
t : 0.26	s : 0.21	q : 0.15	r : 0.10	u : 0.05	o : 0.05	v : 0.05	x : 0.05	w : 0.05	
t : 0.26	s : 0.21	q : 0.15	r : 0.10	u : 0.05	o : 0.05	v : 0.05	x : 0.05	w : 0.05	
t : 0.26	s : 0.21	f : 0.10	r : 0.10	u : 0.05	a : 0.05	v : 0.05	x : 0.05	w : 0.05	q : 0.05	
t : 0.26	s : 0.21	f : 0.10	u : 0.05	c : 0.05	] : 0.05	v : 0.05	x : 0.05	w : 0.05	b : 0.05	r : 0.05	
f : 0.31	t : 0.10	e : 0.10	d : 0.10	u : 0.05	g : 0.05	c : 0.05	v : 0.05	x : 0.05	w : 0.05	b : 0.05	
f : 0.36	d : 0.15	e : 0.10	h : 0.05	g : 0.05	c : 0.05	v : 0.05	x : 0.05	w : 0.05	] : 0.05	
f : 0.47	d : 0.15	e : 0.10	h : 0.05	g : 0.05	] : 0.05	v : 0.05	x : 0.05	

#score	229.53545272371574
#seq	19
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_transcript_m1_run1.txt

#BEAR
ggggg[bb[cccnnnnnccc22bb]gggggg	chr19:18497159-18497372(+)$1	213	56	87	11.3738
ddd!!ccc[cccoooooocccccc22dddd]	chr7:100856044-100856268(-)$1	224	62	93	14.0492
"===========oooooo===========33	chr9:116831887-116832122(-)$1	235	30	61	17.3008
!!ffffff[cccooooooccc]ffffff22b	chr7:29070220-29070455(-)$1	235	20	51	14.1021
cccccgggggggooooooggggggg]cccHH	chr16:30080719-30080953(+)$1	234	166	197	13.6140
iiiiiiiiccc[ccclllccc]ccc4444ii	chr2:55200629-55200857(-)$1	228	181	212	11.3404
============oooooo=============	chr19:17918928-17919243(+)$1	315	46	77	17.2497
[a"""a[eeeeeooooooeeeee]a22addd	chr16:74640453-74640698(-)$1	245	46	77	13.3045
ccc[iiiiiiiiillliiiiiiiii]ccc]e	chr1:12024600-12024819(+)$1	219	103	134	11.8702
[iiiiiiiiibboooooobb]iiiiiiiii3	chr14:93175917-93176168(-)$1	251	181	212	15.6836
g!!a[a!!ddddoooooodddd333a]a22g	chr6:41712370-41712605(-)$1	235	18	49	14.7767
ggggg####cccnnnnnccc4444ggggggg	chr1:183084604-183084873(+)$1	269	41	72	12.8221
###hhhhhhhhaooooooa]hhhhhhhh22e	chr12:50149427-50149638(+)$1	211	97	128	12.5137
c[bb!!ffffffooooooffffffbbccc22	chr9:34370888-34371138(-)$1	250	8	39	12.7479
f[ccc!!a[cccoooooocccacccffffff	chr15:73854190-73854411(-)$1	221	168	199	14.7733
gggggg[ccc[aooooooaccc]ggggggg:	chr13:113964984-113965228(+)$1	244	56	87	14.9615
####ddddcccaooooooa]ccc]dddd333	chr5:135392296-135392538(+)$1	242	91	122	13.9108
gggggccc[ccclllccc]ccc4444ggggg	chr1:169094157-169094377(+)$1	220	75	106	11.3562
========[ccc[annnnna]ccc=======	chr9:124074516-124074740(+)$1	224	63	94	12.5408
eee[ccc"""bboooooobb333ccc22eee	chr6:29910648-29910881(+)$1	233	4	35	13.7360
!!a[dddd!!aooooooa22ddddaccceee	chr17:42428314-42428553(+)$1	239	57	88	12.1589
iiiiiii[ddddooooooddddiiiiiiiii	chr20:61471883-61472130(+)$1	247	85	116	15.2553
b[eeeee####aooooooa333eeeee]bbc	chr2:128186025-128186273(+)$1	248	158	189	12.9424
ee[bb[bb[cccooooooccc]bb]bb22ee	chr6:31896581-31896794(+)$1	213	89	120	13.0312
gbb####eeeeeooooooeeeeebb]ggggg	chr15:73995897-73996147(+)$1	250	46	77	13.3859
c[a!!dddd!!aooooooa22ddddaccccc	chr19:579480-579712(+)$1	232	78	109	13.3222
eee[a$$$$$bboooooobba]eeeee333e	chr15:39886413-39886663(+)$1	250	137	168	12.6536
Fbb!!gggggggaooooooa]ggggggg22b	chr3:190027855-190028115(-)$1	260	104	135	13.5464
[ggggggg[cccooooooccc]ggggggg]c	chr12:46758085-46758380(-)$1	295	225	256	16.7678
"ggggggg!!cccnnnnnccc4444gggggg	chr13:100211586-100211840(+)$1	254	70	101	12.8349
e!!iiiiiiiiiooooooiiiiiiiii]eee	chr1:154918197-154918475(-)$1	278	195	226	15.9101
=====####cccmmmmccc4444========	chr17:26982225-26982541(-)$1	316	212	243	12.1131
iiii[ccc!!cccnnnnnccc22ccc]iiii	chr16:74514169-74514384(-)$1	215	42	73	12.4730
gg!!ccceeeeeooooooeeeee]ccc]ggg	chr13:113803654-113803910(+)$1	256	52	83	14.1891
dd!!dddd[cccooooooccc]dddd]dddd	chr16:29899018-29899238(-)$1	220	39	70	13.2509
fff[gggggggccclllccc22ggggggg]f	chr19:13051288-13051552(+)$1	264	163	194	11.1700
ffff####ddddoooooodddd4444fffff	chr22:24963993-24964245(+)$1	252	58	89	12.8166
[iiiiiiiii[annnnna]iiiiiiiii22c	chrX:132826406-132826615(-)$1	209	103	134	12.9993
========ddddoooooodddd]========	chr11:43819829-43820079(+)$1	250	190	221	15.6427
"""ccc####cccnnnnnccc333ccc22ee	chr19:54377535-54377764(+)$1	229	180	211	12.0357
============oooooo============b	chr15:90334110-90334337(-)$1	227	97	128	16.9060
gggggg"""cccooooooccc333ggggggg	chr3:50357300-50357564(-)$1	264	74	105	16.9810
======ffffffooooooffffffcccbbee	chr8:126023715-126023967(+)$1	252	22	53	13.5216
ggggg"""ddddooooooddddggggggg:H	chr11:1780101-1780349(-)$1	248	154	185	13.1731
ggg"""ffffffooooooffffff333gggg	chr1:155984655-155984885(-)$1	230	181	212	14.6340
hhhhhgggggggooooooggggggg22hhhh	chr10:90975642-90975867(-)$1	225	180	211	13.7695
c[bb!!ffffffooooooffffffbbccc22	chr9:34370938-34371196(-)$1	258	66	97	12.7479
hh"""gggggggooooooggggggghhhhhh	chr19:45153009-45153346(+)$1	337	8	39	14.5387
"ggggggg"""aooooooa333ggggggg33	chr1:207317183-207317441(+)$1	258	159	190	16.5388
[bb!!gggggggooooooggggggg22bbee	chr2:162873536-162873766(-)$1	230	141	172	14.3436
dddd[gggggggooooooggggggg]dddd]	chr14:94849038-94849241(-)$1	203	121	152	13.7557
cc[eeeeeacccooooooccc]a333eeeee	chr11:130005402-130005660(+)$1	258	178	209	14.3266
ggggg!!eeeeeooooooeeeee]ggggggg	chr17:80196661-80196898(+)$1	237	185	216	14.7365

#otherMatches

#Seq PSSM
UGGGAAGAUUCGAACACCGACCUCGUCCCGG	chr19:18497159-18497372(+)$1	213	56	87	11.3738
GGAAACUACGUCCCCAAUGGCUGGACUCCUG	chr7:100856044-100856268(-)$1	224	62	93	14.0492
UCCGGGUCUAGGAUGGCCCCUGGGCCUGGUC	chr9:116831887-116832122(-)$1	235	30	61	17.3008
UCGAUUCAUGAGCUUCACCUCCUGAAUCUUG	chr7:29070220-29070455(-)$1	235	20	51	14.1021
CCCAACAUGGUCACCCCAGGCCAUGCUUGCA	chr16:30080719-30080953(+)$1	234	166	197	13.6140
GUUUUUACUAGGAUAAGGUGUGCUGGAUUGU	chr2:55200629-55200857(-)$1	228	181	212	11.3404
AUGUGCGCCGCGAGCUGCUGCGGCGCACGUG	chr19:17918928-17919243(+)$1	315	46	77	17.2497
AGGAAGAGUCCUGCAGGGAGGACGUGACCCG	chr16:74640453-74640698(-)$1	245	46	77	13.3045
UGUCUGGAAUGUGCCCUAUAUUUCAAACAUC	chr1:12024600-12024819(+)$1	219	103	134	11.8702
GGUGCUGUCCCCAGCCCAGGUGGGCAGCAUG	chr14:93175917-93176168(-)$1	251	181	212	15.6836
gaaggagGGAGGGCCUUGCCUCAUAUGCAAC	chr6:41712370-41712605(-)$1	235	18	49	14.7767
ACAUUUUAGGCUCUCUAAGCACACAGUGUGA	chr1:183084604-183084873(+)$1	269	41	72	12.8221
UGCAUUCCUUACAGGUACGUUAAGGGAUUUG	chr12:50149427-50149638(+)$1	211	97	128	12.5137
GCAGAAGUUCGCCGCCCUGCGGGCCUCGCUU	chr9:34370888-34371138(-)$1	250	8	39	12.7479
UUACAAUGUAAGUAUGGCCUUCUGUAGCAGU	chr15:73854190-73854411(-)$1	221	168	199	14.7733
UCUAUAACUGACAUCAGGGCAGAUAUAGAUA	chr13:113964984-113965228(+)$1	244	56	87	14.9615
ACGGAGACCCUCAACCGGGAAGGAGUCUACA	chr5:135392296-135392538(+)$1	242	91	122	13.9108
AAGAUUCAGCCCAGAGGGAUGACAUGAUUUU	chr1:169094157-169094377(+)$1	220	75	106	11.3562
AGGCGGGGCACUGACUUCCUGGGUCUCUGUC	chr9:124074516-124074740(+)$1	224	63	94	12.5408
GCGAGCCAGAGGAUGGAGCCGCGGGCGCCGU	chr6:29910648-29910881(+)$1	233	4	35	13.7360
AAGUGACAAAGACCCACCCCUGUCCCCACUC	chr17:42428314-42428553(+)$1	239	57	88	12.1589
CUGGGCUUCCAGGUGCCAUUGGGGCCCAGGG	chr20:61471883-61472130(+)$1	247	85	116	15.2553
AAGGAGGCCAAGAGAAACCGCACCUUCGUCC	chr2:128186025-128186273(+)$1	248	158	189	12.9424
AAACAGCUGUGUGUGAUAAUGGGGGUGAGUU	chr6:31896581-31896794(+)$1	213	89	120	13.0312
UAGCCUAGAGAGUCCCAUUUCUCCUCACCAC	chr15:73995897-73996147(+)$1	250	46	77	13.3859
UUGAAUGACAGCGCCACAGAGGUCACAGGGC	chr19:579480-579712(+)$1	232	78	109	13.3222
UAUGAUAAAACCUAUGCUGGUGGUAGACUAG	chr15:39886413-39886663(+)$1	250	137	168	12.6536
UGGCAAUAGAAUCGUUCAAGAAUUCUAUGAC	chr3:190027855-190028115(-)$1	260	104	135	13.5464
AUUUUCUCAAAAGAAGAGUUUAGGGAAGAAA	chr12:46758085-46758380(-)$1	295	225	256	16.7678
UUACUGCAGUUUAUUUCUUAAUCUAUGCAGU	chr13:100211586-100211840(+)$1	254	70	101	12.8349
GCACGGCUGCCCUGGGCUGGGCAGCUGACCA	chr1:154918197-154918475(-)$1	278	195	226	15.9101
CACUUCACCUCUUUCUGGAAACCAGGUGAGG	chr17:26982225-26982541(-)$1	316	212	243	12.1131
AAGGAAAUGUCUAUUAAUUAGUGGUUAUCUU	chr16:74514169-74514384(-)$1	215	42	73	12.4730
AGUACGGGAUCUACACCAAGGUCACCGCCUU	chr13:113803654-113803910(+)$1	256	52	83	14.1891
CCCCGAGGAGAAGGACAGUUCACCUCAGGCU	chr16:29899018-29899238(-)$1	220	39	70	13.2509
AGAACCCUGAGUACAAGGUGAGUUUGGGGCU	chr19:13051288-13051552(+)$1	264	163	194	11.1700
UGCUGAAGAACGCACCCAUGUUAAAGAGCAU	chr22:24963993-24964245(+)$1	252	58	89	12.8166
CAGAAGUUGAAGUCUUUCAUCAGCUUCUAUA	chrX:132826406-132826615(-)$1	209	103	134	12.9993
UAUUUGACUUUAUGACUUUGGAUGUUAAGUG	chr11:43819829-43820079(+)$1	250	190	221	15.6427
GGUGCACUCUGCCCACCUGGUUUUUGUCAAG	chr19:54377535-54377764(+)$1	229	180	211	12.0357
UGGGCAAGGUCUGGUCUGGGACUUUGUCCAG	chr15:90334110-90334337(-)$1	227	97	128	16.9060
ACUGGCAGGACAAAGAUGUGUAUCGCCGGUU	chr3:50357300-50357564(-)$1	264	74	105	16.9810
UGUUAUGACCCAUUUCUUUGGGUUGGUGGGA	chr8:126023715-126023967(+)$1	252	22	53	13.5216
AGUCCCUCUGGGGCCUUUCCCAGGACUCGAG	chr11:1780101-1780349(-)$1	248	154	185	13.1731
CUUAAAAUCUCUUGUgguggggguaagaggg	chr1:155984655-155984885(-)$1	230	181	212	14.6340
UUUUAGUCUUUUCAUUAAAGGGGGCCCUGAA	chr10:90975642-90975867(-)$1	225	180	211	13.7695
GCAGAAGUUCGCCGCCCUGCGGGCCUCGCUU	chr9:34370938-34371196(-)$1	258	66	97	12.7479
AAUGCCCCCUUCUGCCACGGAGGGGUUCAUU	chr19:45153009-45153346(+)$1	337	8	39	14.5387
GUGGCACAAUUCAAGGAAGUUCUGUGCUGUC	chr1:207317183-207317441(+)$1	258	159	190	16.5388
UGAUAAAGGUAUUUUCUCAUAUUUUACUCUU	chr2:162873536-162873766(-)$1	230	141	172	14.3436
AUAAGUUUUUGGAGGAUGUUAAAAAGUUGUA	chr14:94849038-94849241(-)$1	203	121	152	13.7557
ACCCCUUCCCAGCCCUACCUGAGAACGAAGG	chr11:130005402-130005660(+)$1	258	178	209	14.3266
GUCUGAGUGGCUGGGCGGGGCCGGCAGGCAC	chr17:80196661-80196898(+)$1	237	185	216	14.7365

#DB
(((((.((.(((.....)))..)).))))))	chr19:18497159-18497372(+)$1	1	56	87	11.3738
(((..(((.(((......))))))..)))).	chr7:100856044-100856268(-)$1	1	62	93	14.0492
.(((((((((((......)))))))))))..	chr9:116831887-116832122(-)$1	1	30	61	17.3008
..((((((.(((......))).))))))..)	chr7:29070220-29070455(-)$1	1	20	51	14.1021
))((((((((((......))))))).)))))	chr16:30080719-30080953(+)$1	1	166	197	13.6140
(((((((((((.(((...))).)))....))	chr2:55200629-55200857(-)$1	1	181	212	11.3404
((((((((((((......)))))))))))))	chr19:17918928-17919243(+)$1	1	46	77	17.2497
.(...(.(((((......))))).)..))))	chr16:74640453-74640698(-)$1	1	46	77	13.3045
(((.(((((((((...))))))))).))).)	chr1:12024600-12024819(+)$1	1	103	134	11.8702
.(((((((((((......)).))))))))).	chr14:93175917-93176168(-)$1	1	181	212	15.6836
(..(.(..((((......))))...).)..)	chr6:41712370-41712605(-)$1	1	18	49	14.7767
(((((....(((.....)))....)))))))	chr1:183084604-183084873(+)$1	1	41	72	12.8221
...(((((((((......).))))))))..)	chr12:50149427-50149638(+)$1	1	97	128	12.5137
(.((..((((((......)))))))))))..	chr9:34370888-34371138(-)$1	1	8	39	12.7479
(.(((..(.(((......)))))))))))))	chr15:73854190-73854411(-)$1	1	168	199	14.7733
((((((.(((.(......)))).))))))).	chr13:113964984-113965228(+)$1	1	56	87	14.9615
....((((((((......).))).))))...	chr5:135392296-135392538(+)$1	1	91	122	13.9108
((((((((.(((...))).)))....)))))	chr1:169094157-169094377(+)$1	1	75	106	11.3562
((((((((.(((.(.....).))))))))))	chr9:124074516-124074740(+)$1	1	63	94	12.5408
(((.(((...((......))...)))..)))	chr6:29910648-29910881(+)$1	1	4	35	13.7360
..(.((((..(......)..)))))))))))	chr17:42428314-42428553(+)$1	1	57	88	12.1589
(((((((.((((......)))))))))))))	chr20:61471883-61472130(+)$1	1	85	116	15.2553
(.(((((....(......)...))))).)))	chr2:128186025-128186273(+)$1	1	158	189	12.9424
((.((.((.(((......))).)).))..))	chr6:31896581-31896794(+)$1	1	89	120	13.0312
(((....(((((......))))))).)))))	chr15:73995897-73996147(+)$1	1	46	77	13.3859
(.(..((((..(......)..))))))))))	chr19:579480-579712(+)$1	1	78	109	13.3222
(((.(.....((......))).)))))...)	chr15:39886413-39886663(+)$1	1	137	168	12.6536
(((..((((((((......).)))))))..)	chr3:190027855-190028115(-)$1	1	104	135	13.5464
.(((((((.(((......))).))))))).)	chr12:46758085-46758380(-)$1	1	225	256	16.7678
.(((((((..(((.....)))....))))))	chr13:100211586-100211840(+)$1	1	70	101	12.8349
(..(((((((((......))))))))).)))	chr1:154918197-154918475(-)$1	1	195	226	15.9101
(((((....(((....)))....))))))))	chr17:26982225-26982541(-)$1	1	212	243	12.1131
((((.(((..(((.....)))..))).))))	chr16:74514169-74514384(-)$1	1	42	73	12.4730
((..((((((((......))))).))).)))	chr13:113803654-113803910(+)$1	1	52	83	14.1891
((..((((.(((......))).)))).))))	chr16:29899018-29899238(-)$1	1	39	70	13.2509
(((.((((((((((...)))..))))))).)	chr19:13051288-13051552(+)$1	1	163	194	11.1700
((((....((((......))))....)))))	chr22:24963993-24964245(+)$1	1	58	89	12.8166
.(((((((((.(.....).)))))))))..)	chrX:132826406-132826615(-)$1	1	103	134	12.9993
((((((((((((......)))).))))))))	chr11:43819829-43820079(+)$1	1	190	221	15.6427
...(((....(((.....)))...)))..))	chr19:54377535-54377764(+)$1	1	180	211	12.0357
((((((((((((......)))))))))))))	chr15:90334110-90334337(-)$1	1	97	128	16.9060
((((((...(((......)))...)))))))	chr3:50357300-50357564(-)$1	1	74	105	16.9810
))))))((((((......))))))(((((((	chr8:126023715-126023967(+)$1	1	22	53	13.5216
(((((...((((......))))))))))).)	chr11:1780101-1780349(-)$1	1	154	185	13.1731
(((...((((((......))))))...))))	chr1:155984655-155984885(-)$1	1	181	212	14.6340
((((((((((((......)))))))..))))	chr10:90975642-90975867(-)$1	1	180	211	13.7695
(.((..((((((......)))))))))))..	chr9:34370938-34371196(-)$1	1	66	97	12.7479
((...(((((((......)))))))))))))	chr19:45153009-45153346(+)$1	1	8	39	14.5387
.(((((((...(......)...)))))))..	chr1:207317183-207317441(+)$1	1	159	190	16.5388
.((..(((((((......)))))))..))))	chr2:162873536-162873766(-)$1	1	141	172	14.3436
((((.(((((((......))))))).)))).	chr14:94849038-94849241(-)$1	1	121	152	13.7557
((.(((((((((......))).)...)))))	chr11:130005402-130005660(+)$1	1	178	209	14.3266
(((((..(((((......))))).)))))))	chr17:80196661-80196898(+)$1	1	185	216	14.7365

#PSSM
g : 0.20	c : 0.11	= : 0.11	[ : 0.09	" : 0.07	e : 0.07	d : 0.05	i : 0.05	f : 0.05	! : 0.03	# : 0.03	h : 0.03	b : 0.01	F : 0.01	
g : 0.22	= : 0.13	i : 0.09	[ : 0.09	! : 0.07	d : 0.05	c : 0.05	e : 0.05	b : 0.05	# : 0.03	f : 0.03	h : 0.03	a : 0.01	" : 0.01	
g : 0.20	= : 0.13	i : 0.09	b : 0.09	! : 0.07	f : 0.05	c : 0.05	" : 0.05	e : 0.05	d : 0.03	# : 0.03	a : 0.03	[ : 0.03	h : 0.01	
g : 0.18	= : 0.13	! : 0.11	i : 0.11	[ : 0.09	c : 0.05	" : 0.05	b : 0.05	f : 0.03	h : 0.03	# : 0.03	e : 0.03	a : 0.01	d : 0.01	
g : 0.20	= : 0.13	! : 0.11	i : 0.11	c : 0.09	" : 0.05	[ : 0.05	d : 0.05	h : 0.03	e : 0.03	# : 0.03	f : 0.01	b : 0.01	a : 0.01	
g : 0.22	c : 0.11	= : 0.11	i : 0.11	# : 0.07	! : 0.07	d : 0.07	[ : 0.03	a : 0.03	e : 0.03	" : 0.03	f : 0.01	h : 0.01	$ : 0.01	
g : 0.18	i : 0.11	c : 0.09	= : 0.09	f : 0.09	# : 0.09	d : 0.07	! : 0.05	b : 0.03	[ : 0.03	e : 0.03	" : 0.03	h : 0.01	$ : 0.01	
g : 0.18	= : 0.09	f : 0.09	i : 0.09	e : 0.09	# : 0.09	c : 0.07	d : 0.07	" : 0.05	b : 0.03	! : 0.01	h : 0.01	a : 0.01	[ : 0.01	$ : 0.01	
[ : 0.16	g : 0.13	d : 0.11	e : 0.07	i : 0.07	# : 0.07	f : 0.07	= : 0.05	c : 0.05	" : 0.05	! : 0.05	h : 0.01	$ : 0.01	a : 0.01	
c : 0.30	g : 0.13	d : 0.09	e : 0.07	i : 0.07	f : 0.07	! : 0.07	= : 0.05	" : 0.03	# : 0.03	h : 0.01	$ : 0.01	
c : 0.33	g : 0.13	d : 0.09	e : 0.07	f : 0.07	= : 0.05	b : 0.05	i : 0.03	[ : 0.03	h : 0.01	a : 0.01	# : 0.01	! : 0.01	" : 0.01	
c : 0.32	a : 0.13	g : 0.11	d : 0.09	e : 0.07	f : 0.07	= : 0.05	b : 0.05	i : 0.03	[ : 0.01	o : 0.01	
o : 0.75	c : 0.09	n : 0.05	i : 0.01	l : 0.01	[ : 0.01	a : 0.01	m : 0.01	
o : 0.77	n : 0.11	c : 0.03	l : 0.03	a : 0.01	m : 0.01	
o : 0.77	n : 0.13	l : 0.05	c : 0.01	m : 0.01	
o : 0.77	n : 0.13	l : 0.05	c : 0.01	m : 0.01	
o : 0.77	n : 0.13	l : 0.03	c : 0.03	i : 0.01	
o : 0.75	c : 0.09	n : 0.07	a : 0.03	l : 0.01	i : 0.01	
c : 0.30	a : 0.11	g : 0.09	d : 0.09	e : 0.07	f : 0.07	= : 0.05	b : 0.05	i : 0.03	] : 0.03	n : 0.01	2 : 0.01	o : 0.01	
c : 0.32	g : 0.09	d : 0.09	e : 0.07	f : 0.07	= : 0.05	i : 0.05	b : 0.05	] : 0.03	a : 0.03	2 : 0.03	3 : 0.03	4 : 0.01	
c : 0.28	d : 0.11	g : 0.09	e : 0.07	f : 0.07	2 : 0.05	= : 0.05	i : 0.05	] : 0.05	3 : 0.05	4 : 0.03	h : 0.01	a : 0.01	
] : 0.13	d : 0.13	g : 0.11	c : 0.09	3 : 0.09	e : 0.07	i : 0.07	f : 0.07	2 : 0.05	= : 0.05	4 : 0.05	h : 0.01	a : 0.01	
g : 0.18	e : 0.11	c : 0.09	f : 0.09	i : 0.09	4 : 0.09	3 : 0.07	= : 0.05	d : 0.05	b : 0.03	] : 0.03	h : 0.01	2 : 0.01	a : 0.01	
g : 0.20	c : 0.11	= : 0.09	f : 0.09	i : 0.09	] : 0.07	3 : 0.07	4 : 0.07	b : 0.05	d : 0.05	e : 0.03	h : 0.01	
g : 0.26	c : 0.13	= : 0.11	i : 0.09	3 : 0.05	b : 0.05	d : 0.05	4 : 0.05	] : 0.03	a : 0.03	e : 0.03	2 : 0.01	f : 0.01	h : 0.01	
g : 0.20	= : 0.11	c : 0.11	2 : 0.07	] : 0.07	i : 0.07	4 : 0.05	b : 0.05	f : 0.03	a : 0.03	h : 0.03	d : 0.03	e : 0.03	3 : 0.03	
g : 0.24	c : 0.16	= : 0.11	2 : 0.07	i : 0.07	d : 0.05	f : 0.05	] : 0.05	e : 0.05	h : 0.03	4 : 0.01	b : 0.01	3 : 0.01	
g : 0.26	= : 0.11	c : 0.11	d : 0.07	i : 0.07	f : 0.05	h : 0.05	2 : 0.05	] : 0.05	a : 0.03	b : 0.03	4 : 0.01	3 : 0.01	e : 0.01	
g : 0.26	2 : 0.13	= : 0.11	c : 0.09	d : 0.07	e : 0.07	i : 0.05	b : 0.05	f : 0.03	3 : 0.03	h : 0.03	4 : 0.01	
g : 0.18	e : 0.15	2 : 0.13	= : 0.09	d : 0.07	3 : 0.07	i : 0.07	] : 0.05	f : 0.03	h : 0.03	H : 0.01	b : 0.01	c : 0.01	: : 0.01	
e : 0.20	g : 0.18	3 : 0.07	= : 0.07	c : 0.07	b : 0.05	i : 0.05	f : 0.05	] : 0.03	H : 0.03	d : 0.03	2 : 0.03	h : 0.03	: : 0.01	

#score	732.5021585773865
#seq	53
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF545FMX_NPM1_CDS_m1_run1.txt

#BEAR
d!!bbvvvvvvvvvvvvvbb22dddd>>>>>>>>>>>>cc	chr2:232325128-232325375(-)$1	247	136	176	47.5348
^^^^^^^^^^^^^^^^^^^^^eeeee>>>>>>>>>>>>>>	chr12:104341071-104341309(+)$1	238	19	59	44.0680
dddd^^^^^^^^^^^^^^^^^^dddd55555a22======	chr2:232322875-232323091(-)$1	216	21	61	35.2972
d!!bbvvvvvvvvvvvvvbb22dddd>>>>>>>>>>>>cc	chr2:232325089-232325328(-)$1	239	89	129	47.5348

#otherMatches

#Seq PSSM
AAAUGGCCAAACAGAAAGCAGCUCCUGAAGCCAAGAAACA	chr2:232325128-232325375(-)$1	247	136	176	47.5348
Ggaagaagagcccgaagaagaaccugaagagacagcagaa	chr12:104341071-104341309(+)$1	238	19	59	44.0680
AUCUCCCUUACAAAGUCACUCAGGAUGAAUUGAAAGAAGU	chr2:232322875-232323091(-)$1	216	21	61	35.2972
AAAUGGCCAAACAGAAAGCAGCUCCUGAAGCCAAGAAACA	chr2:232325089-232325328(-)$1	239	89	129	47.5348

#DB
(..((.............))..))))............))	chr2:232325128-232325375(-)$1	1	136	176	47.5348
.....................)))))..............	chr12:104341071-104341309(+)$1	1	19	59	44.0680
((((..................)))).....)..))))))	chr2:232322875-232323091(-)$1	1	21	61	35.2972
(..((.............))..))))............))	chr2:232325089-232325328(-)$1	1	89	129	47.5348

#PSSM
d : 0.75	^ : 0.25	
! : 0.50	^ : 0.25	d : 0.25	
! : 0.50	^ : 0.25	d : 0.25	
b : 0.50	^ : 0.25	d : 0.25	
b : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
v : 0.50	^ : 0.50	
b : 0.50	^ : 0.50	
b : 0.50	^ : 0.50	
2 : 0.50	^ : 0.50	
2 : 0.50	e : 0.25	^ : 0.25	
d : 0.75	e : 0.25	
d : 0.75	e : 0.25	
d : 0.75	e : 0.25	
d : 0.75	e : 0.25	
> : 0.75	5 : 0.25	
> : 0.75	5 : 0.25	
> : 0.75	5 : 0.25	
> : 0.75	5 : 0.25	
> : 0.75	5 : 0.25	
> : 0.75	a : 0.25	
> : 0.75	2 : 0.25	
> : 0.75	2 : 0.25	
> : 0.75	= : 0.25	
> : 0.75	= : 0.25	
> : 0.75	= : 0.25	
> : 0.75	= : 0.25	
c : 0.50	> : 0.25	= : 0.25	
c : 0.50	> : 0.25	= : 0.25	

#score	174.43504338767508
#seq	4
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_CDS_m2_run2.txt

#BEAR
dddeeeeevvvvvvvvvvvvveeee	chr16:56642855-56643068(+)$1	213	161	186	22.5817
ccc[eeeeeuuuuuuuuuuuueeee	chr11:77320315-77320623(+)$1	308	48	73	21.9104
ddddddddyyyyyyyyyyyyyyyyd	chr22:45958783-45959044(+)$1	261	58	83	19.7593
dd[eeeeevvvvvvvvvvvvveeee	chr3:51426292-51426543(+)$1	251	178	203	22.8434
hhhhhhhhwwwwwwwwwwwwwwhhh	chr3:52741722-52742038(+)$1	316	171	196	20.1458
[ggggggg^^^^^^^^^^^^^^^^^	chr1:24022733-24022965(+)$1	232	102	127	17.5093
ffffff[bbuuuuuuuuuuuubb]f	chr16:18800323-18800535(-)$1	212	181	206	20.8499
::ffffffvvvvvvvvvvvvvffff	chr19:51848336-51848586(-)$1	250	162	187	21.1075
d[ffffffwwwwwwwwwwwwwwfff	chr16:66965991-66966245(-)$1	254	210	235	22.1593
"""ffffffuuuuuuuuuuuuffff	chr17:56423452-56423710(-)$1	258	158	183	21.6271
a!!eeeee^^^^^^^^^^^^^^^^^	chr1:116944169-116944377(+)$1	208	88	113	17.5468
ehhhhhhhhuuuuuuuuuuuuhhhh	chr22:24313625-24313846(-)$1	221	9	34	19.1109
GGffffffvvvvvvvvvvvvvffff	chr19:41270964-41271267(+)$1	303	144	169	21.6842
:gggggggxxxxxxxxxxxxxxxgg	chr1:161192008-161192227(-)$1	219	61	86	17.9320
ee"""bbwwwwwwwwwwwwwwbb33	chr16:72094441-72094723(+)$1	282	31	56	20.8300
dd[eeeeettttttttttteeeee]	chr16:56716327-56716580(+)$1	253	9	34	19.3199
ddddddddtttttttttttdddd44	chr3:48510779-48511040(-)$1	261	135	160	18.2742
fffffffwwwwwwwwwwwwwwffff	chr11:6703247-6703547(-)$1	300	264	289	21.3845
iiiffffffuuuuuuuuuuuuffff	chr17:73143583-73143827(-)$1	244	33	58	21.4169
dddd[ccc^^^^^^^^^^^^^^^^^	chr9:127115701-127115993(-)$1	292	198	223	16.9663
a[bb[ddddtttttttttttdddd]	chr13:27827856-27828080(+)$1	224	31	56	19.0301
"""eeeeevvvvvvvvvvvvveeee	chr22:41223037-41223330(-)$1	293	247	272	23.0212
""ffffff^^^^^^^^^^^^^^^^^	chr13:37523957-37524245(-)$1	288	143	168	17.2781
""a!!cccvvvvvvvvvvvvvccc2	chr20:62659731-62659975(+)$1	244	136	161	23.2006
cggggggg^^^^^^^^^^^^^^^^^	chr20:34143733-34143956(+)$1	223	55	80	17.4769
::eeeeewwwwwwwwwwwwwweeee	chr11:66051980-66052238(-)$1	258	84	109	20.4019
&ddddccctttttttttttccc]dd	chr5:1815862-1816129(+)$1	267	135	160	18.5219
eeee[cccvvvvvvvvvvvvvccce	chr14:50052653-50052864(-)$1	211	44	69	22.8375
dd"""cccuuuuuuuuuuuuccc33	chr1:36068749-36069007(-)$1	258	30	55	21.7764
ddffffffuuuuuuuuuuuufffff	chr2:201943537-201943817(+)$1	280	111	136	21.1186
cccc!!ddddtttttttttttdddd	chr21:35275692-35275946(-)$1	254	31	56	18.8394
::ffffffuuuuuuuuuuuufffff	chr17:72205842-72206081(+)$1	239	5	30	19.8010
####dddd^^^^^^^^^^^^^^^^^	chr17:37009225-37009431(-)$1	206	27	52	16.9939
[eeeee[bbuuuuuuuuuuuubbee	chr17:6917537-6917783(+)$1	246	185	210	21.1248
ccc:ddddvvvvvvvvvvvvvdddd	chr16:56700699-56700956(-)$1	257	177	202	21.1062
==[a[cccvvvvvvvvvvvvvccc]	chr6:44222278-44222551(-)$1	273	183	208	23.3294
eee!!cccvvvvvvvvvvvvvccc]	chr2:201950233-201950540(+)$1	307	101	126	23.0213
#ffffff[auuuuuuuuuuuua]ff	chr5:162886788-162887108(-)$1	320	32	57	22.2174
"dddd!!a^^^^^^^^^^^^^^^^^	chr2:217363497-217363700(+)$1	203	127	152	16.8074
hhhhhhhhwwwwwwwwwwwwwwhhh	chr16:85840294-85840557(+)$1	263	11	36	20.1458
cc[a!!bbuuuuuuuuuuuubb333	chr12:56510480-56510684(+)$1	204	141	166	21.2006
fff!!bbccctttttttttttccc]	chr22:45942864-45943095(+)$1	231	45	70	19.3374
::ffffffuuuuuuuuuuuufffff	chr2:101622340-101622557(+)$1	217	138	163	19.8010
c[ggggggguuuuuuuuuuuugggg	chr1:156563643-156563939(+)$1	296	4	29	21.9724
[gggggggxxxxxxxxxxxxxxxgg	chr5:176733322-176733541(+)$1	219	32	57	18.6114
b[eeeeeyyyyyyyyyyyyyyyyee	chr7:75933381-75933669(+)$1	288	184	209	20.3851
:hhhhhhhhuuuuuuuuuuuuhhhh	chr17:79826315-79826584(-)$1	269	171	196	18.6175
:::eeeeevvvvvvvvvvvvveeee	chr2:219118514-219118784(+)$1	270	237	262	20.3630
eee!!cccvvvvvvvvvvvvvccc]	chr2:241073298-241073522(-)$1	224	61	86	23.0213
Fffffff[bbtttttttttttbb]f	chr13:21751160-21751407(+)$1	247	170	195	18.4799
fff[ddddyyyyyyyyyyyyyyyyd	chr2:98264383-98264610(+)$1	227	181	206	19.9941
:gggggggwwwwwwwwwwwwwwggg	chr4:74321249-74321464(+)$1	215	167	192	21.9289
bb[eeeee^^^^^^^^^^^^^^^^^	chr17:36891417-36891651(-)$1	234	97	122	17.0242
((((ddddvvvvvvvvvvvvvdddd	chr8:144102980-144103253(+)$1	273	45	70	19.6685
D:ccc!!auuuuuuuuuuuua22cc	chr1:161192058-161192270(-)$1	212	143	168	20.0044
ccc[ddddxxxxxxxxxxxxxxxdd	chr7:75694019-75694256(+)$1	237	130	155	17.9099
####dddd^^^^^^^^^^^^^^^^^	chr17:37009255-37009458(-)$1	203	54	79	16.9939
!gggggggvvvvvvvvvvvvvgggg	chr14:103396873-103397130(+)$1	257	165	190	23.1428
ggg:eeeeeuuuuuuuuuuuueeee	chr19:39125543-39125805(+)$1	262	145	170	20.7469
========vvvvvvvvvvvvv====	chr19:4659842-4660061(-)$1	219	38	63	22.8722
d[gggggggtttttttttttggggg	chr5:159492156-159492430(+)$1	274	69	94	19.7937
DDDeeeeevvvvvvvvvvvvveeee	chr17:1680586-1680805(+)$1	219	48	73	20.1534
fffff[cccuuuuuuuuuuuuccc]	chr1:1337322-1337586(-)$1	264	64	89	21.9194

#otherMatches

#Seq PSSM
UGUCCCCUCUCCACCAUCCUCAGGG	chr16:56642855-56643068(+)$1	213	161	186	22.5817
UGUUCAGCUUUUUCCUUCCAUGGCU	chr11:77320315-77320623(+)$1	308	48	73	21.9104
CUCUGAGAAUAACCUACUACCACCU	chr22:45958783-45959044(+)$1	261	58	83	19.7593
UGAUGCCUAAAUAUGCCCCCAAGGC	chr3:51426292-51426543(+)$1	251	178	203	22.8434
AUAAGAGCUAAAACCACCUAAUGCU	chr3:52741722-52742038(+)$1	316	171	196	20.1458
UGAUGGGAUCAUCCUUCCUGGCAAA	chr1:24022733-24022965(+)$1	232	102	127	17.5093
AGGCCGUGCUCCAAAGUCAUCGUCC	chr16:18800323-18800535(-)$1	212	181	206	20.8499
UAUCUCUGUUAACUUAUUUCCUAGA	chr19:51848336-51848586(-)$1	250	162	187	21.1075
GUUUUCUUGAAUCACUCACAAUGAG	chr16:66965991-66966245(-)$1	254	210	235	22.1593
CUUGUUCUGGAACUAAAUGAACAGA	chr17:56423452-56423710(-)$1	258	158	183	21.6271
CUUAGGAUGUAUCCCCUCAAGUAAG	chr1:116944169-116944377(+)$1	208	88	113	17.5468
AUAUCUUUUUCUCUGUCUCCUGAAG	chr22:24313625-24313846(-)$1	221	9	34	19.1109
UGGGGCCACCCCUUUCCCCCUUGGC	chr19:41270964-41271267(+)$1	303	144	169	21.6842
AGCUGGCCUCUAGAACACCCACUGG	chr1:161192008-161192227(-)$1	219	61	86	17.9320
CUGUGGCUGACCAAGACCAAUGCAU	chr16:72094441-72094723(+)$1	282	31	56	20.8300
GCCCUCUUCCCGGACUAUAAAGAGA	chr16:56716327-56716580(+)$1	253	9	34	19.3199
GCCCAGCUACCCUGGACCAAGCUAC	chr3:48510779-48511040(-)$1	261	135	160	18.2742
CUCUCUGAGAAGAACUGGAGCUAGA	chr11:6703247-6703547(-)$1	300	264	289	21.3845
GGUUUUUUCUAUUGUAUUUCUGAAG	chr17:73143583-73143827(-)$1	244	33	58	21.4169
UGCCGAAUGAAACUCAACUCAAUAA	chr9:127115701-127115993(-)$1	292	198	223	16.9663
CUUUCUGGUUUCAGUAAUUCGCCAA	chr13:27827856-27828080(+)$1	224	31	56	19.0301
AAACUUUGGACUUUGUAUCAUUAAG	chr22:41223037-41223330(-)$1	293	247	272	23.0212
GAGCAAACUCGGAAAAUGAAUUAGG	chr13:37523957-37524245(-)$1	288	143	168	17.2781
AAGAACAUCGCAAAUACACUCAUGG	chr20:62659731-62659975(+)$1	244	136	161	23.2006
UGGUGUUGUUUACAGAUCAACAUGA	chr20:34143733-34143956(+)$1	223	55	80	17.4769
UCCAGCCCCUCAUCAUAUACUGGCU	chr11:66051980-66052238(-)$1	258	84	109	20.4019
UGUGGGCUCCAGUUCAGACAGCACC	chr5:1815862-1816129(+)$1	267	135	160	18.5219
GCGGAGUCUUGUAAUUUCUAUGACC	chr14:50052653-50052864(-)$1	211	44	69	22.8375
AGCUCCAGAAACGCUUCAUCCUGAA	chr1:36068749-36069007(-)$1	258	30	55	21.7764
AACUUCCAGAUUAUAGACAAUGGAA	chr2:201943537-201943817(+)$1	280	111	136	21.1186
UUGUGCGCAUUGGCGAGAAAUAUGU	chr21:35275692-35275946(-)$1	254	31	56	18.8394
UGUGUGCUCUCUUUAGCUUAAGUAC	chr17:72205842-72206081(+)$1	239	5	30	19.8010
AGAUUGUGAUCUCUUUAUCCUGUUU	chr17:37009225-37009431(-)$1	206	27	52	16.9939
GAGAGACUGAAUCCCUUCUCCCAUC	chr17:6917537-6917783(+)$1	246	185	210	21.1248
CCCUGCUCCCAAGUACAAAUAGAGU	chr16:56700699-56700956(-)$1	257	177	202	21.1062
GCUGGCUGAAAGGGCAAAAUGCAGG	chr6:44222278-44222551(-)$1	273	183	208	23.3294
CUGAAGAUAAUACCUGGAAGCAUCA	chr2:201950233-201950540(+)$1	307	101	126	23.0213
CGGCCGGGAGGGACUGGAUUAUGUC	chr5:162886788-162887108(-)$1	320	32	57	22.2174
UAGAACUCUAUCUGCCUGCAUCUGU	chr2:217363497-217363700(+)$1	203	127	152	16.8074
UGAGAUAGUCUUGCCCCAUAACCUG	chr16:85840294-85840557(+)$1	263	11	36	20.1458
UGGCGAGUAGUAGCGAGGAGACGAA	chr12:56510480-56510684(+)$1	204	141	166	21.2006
UGUGGAGGCAGGGACGUAUGAUGCU	chr22:45942864-45943095(+)$1	231	45	70	19.3374
UCACCAAAUAAGCUAUAUACUUUGG	chr2:101622340-101622557(+)$1	217	138	163	19.8010
CUUCCUGAACACCACCCUCUUUUCA	chr1:156563643-156563939(+)$1	296	4	29	21.9724
AUGGGGGAGGGAAAUUAGGUUGGUC	chr5:176733322-176733541(+)$1	219	32	57	18.6114
CAUUUAUCUUCUGUUUUUCUCAAAU	chr7:75933381-75933669(+)$1	288	184	209	20.3851
AGCAGCCAUUCUCCAGGCCCCGUGG	chr17:79826315-79826584(-)$1	269	171	196	18.6175
UGGUUCCAUUUUGUACACGUUUGGA	chr2:219118514-219118784(+)$1	270	237	262	20.3630
AAAACGCACCUGACAUAACCUUGCC	chr2:241073298-241073522(-)$1	224	61	86	23.0213
CGACCAUCUCAAUGUCACCAAGAAA	chr13:21751160-21751407(+)$1	247	170	195	18.4799
ACACUGAGCACCUGCACUAAAUUAC	chr2:98264383-98264610(+)$1	227	181	206	19.9941
CUUUUUGUGAAUUAAUGAAAUGAUA	chr4:74321249-74321464(+)$1	215	167	192	21.9289
CUGCCUGCAGACACCAUCCUCCACC	chr17:36891417-36891651(-)$1	234	97	122	17.0242
CCCGGCCUGCCCCAUCCCAGAAGGC	chr8:144102980-144103253(+)$1	273	45	70	19.6685
CCUGUCCCUACCCACUCUUUGCUAC	chr1:161192058-161192270(-)$1	212	143	168	20.0044
GCGCCCGCUUUGUCUUCUCCCUUGU	chr7:75694019-75694256(+)$1	237	130	155	17.9099
AGAUUGUGAUCUCUUUAUCCUGUUU	chr17:37009255-37009458(-)$1	203	54	79	16.9939
UUGGGGCUCUCCACCCGCUCUGGCC	chr14:103396873-103397130(+)$1	257	165	190	23.1428
CAGAUCUUCAUCUGUAGCCAAGAAG	chr19:39125543-39125805(+)$1	262	145	170	20.7469
UUUUUCAGUCUAAAGCCGCAUUUGA	chr19:4659842-4660061(-)$1	219	38	63	22.8722
UGAUCAGGGUGAAAUGUACUUCCUG	chr5:159492156-159492430(+)$1	274	69	94	19.7937
CCCGCUGGACUAUCACCUUAACCAG	chr17:1680586-1680805(+)$1	219	48	73	20.1534
GCCUUGGGGGAUGGGAAGGAACCUG	chr1:1337322-1337586(-)$1	264	64	89	21.9194

#DB
((((((((.............))))	chr16:56642855-56643068(+)$1	1	161	186	22.5817
(((.(((((............))))	chr11:77320315-77320623(+)$1	1	48	73	21.9104
))))((((................)	chr22:45958783-45959044(+)$1	1	58	83	19.7593
((.(((((.............))))	chr3:51426292-51426543(+)$1	1	178	203	22.8434
((((((((..............)))	chr3:52741722-52742038(+)$1	1	171	196	20.1458
.(((((((.................	chr1:24022733-24022965(+)$1	1	102	127	17.5093
((((((.((............)).)	chr16:18800323-18800535(-)$1	1	181	206	20.8499
..((((((.............))))	chr19:51848336-51848586(-)$1	1	162	187	21.1075
(.((((((..............)))	chr16:66965991-66966245(-)$1	1	210	235	22.1593
...((((((............))))	chr17:56423452-56423710(-)$1	1	158	183	21.6271
(..(((((.................	chr1:116944169-116944377(+)$1	1	88	113	17.5468
(((((((((............))))	chr22:24313625-24313846(-)$1	1	9	34	19.1109
))((((((.............))))	chr19:41270964-41271267(+)$1	1	144	169	21.6842
.(((((((...............))	chr1:161192008-161192227(-)$1	1	61	86	17.9320
((...((..............))..	chr16:72094441-72094723(+)$1	1	31	56	20.8300
((.(((((...........))))).	chr16:56716327-56716580(+)$1	1	9	34	19.3199
((((((((...........))))..	chr3:48510779-48511040(-)$1	1	135	160	18.2742
(((((((..............))))	chr11:6703247-6703547(-)$1	1	264	289	21.3845
)))((((((............))))	chr17:73143583-73143827(-)$1	1	33	58	21.4169
((((.(((.................	chr9:127115701-127115993(-)$1	1	198	223	16.9663
(.((.((((...........)))).	chr13:27827856-27828080(+)$1	1	31	56	19.0301
...(((((.............))))	chr22:41223037-41223330(-)$1	1	247	272	23.0212
..((((((.................	chr13:37523957-37524245(-)$1	1	143	168	17.2781
..(..(((.............))).	chr20:62659731-62659975(+)$1	1	136	161	23.2006
((((((((.................	chr20:34143733-34143956(+)$1	1	55	80	17.4769
..(((((..............))))	chr11:66051980-66052238(-)$1	1	84	109	20.4019
.(((((((...........))).))	chr5:1815862-1816129(+)$1	1	135	160	18.5219
((((.(((.............))))	chr14:50052653-50052864(-)$1	1	44	69	22.8375
((...(((............)))..	chr1:36068749-36069007(-)$1	1	30	55	21.7764
))((((((............)))))	chr2:201943537-201943817(+)$1	1	111	136	21.1186
((((..((((...........))))	chr21:35275692-35275946(-)$1	1	31	56	18.8394
..((((((............)))))	chr17:72205842-72206081(+)$1	1	5	30	19.8010
....((((.................	chr17:37009225-37009431(-)$1	1	27	52	16.9939
.(((((.((............))))	chr17:6917537-6917783(+)$1	1	185	210	21.1248
))).((((.............))))	chr16:56700699-56700956(-)$1	1	177	202	21.1062
((.(.(((.............))).	chr6:44222278-44222551(-)$1	1	183	208	23.3294
(((..(((.............))).	chr2:201950233-201950540(+)$1	1	101	126	23.0213
.((((((.(............).))	chr5:162886788-162887108(-)$1	1	32	57	22.2174
.((((..(.................	chr2:217363497-217363700(+)$1	1	127	152	16.8074
((((((((..............)))	chr16:85840294-85840557(+)$1	1	11	36	20.1458
((.(..((............))...	chr12:56510480-56510684(+)$1	1	141	166	21.2006
(((..(((((...........))).	chr22:45942864-45943095(+)$1	1	45	70	19.3374
..((((((............)))))	chr2:101622340-101622557(+)$1	1	138	163	19.8010
(.(((((((............))))	chr1:156563643-156563939(+)$1	1	4	29	21.9724
.(((((((...............))	chr5:176733322-176733541(+)$1	1	32	57	18.6114
(.(((((................))	chr7:75933381-75933669(+)$1	1	184	209	20.3851
.((((((((............))))	chr17:79826315-79826584(-)$1	1	171	196	18.6175
...(((((.............))))	chr2:219118514-219118784(+)$1	1	237	262	20.3630
(((..(((.............))).	chr2:241073298-241073522(-)$1	1	61	86	23.0213
(((((((.((...........)).)	chr13:21751160-21751407(+)$1	1	170	195	18.4799
(((.((((................)	chr2:98264383-98264610(+)$1	1	181	206	19.9941
.(((((((..............)))	chr4:74321249-74321464(+)$1	1	167	192	21.9289
((.(((((.................	chr17:36891417-36891651(-)$1	1	97	122	17.0242
....((((.............))))	chr8:144102980-144103253(+)$1	1	45	70	19.6685
(.(((..(............)..))	chr1:161192058-161192270(-)$1	1	143	168	20.0044
(((.((((...............))	chr7:75694019-75694256(+)$1	1	130	155	17.9099
....((((.................	chr17:37009255-37009458(-)$1	1	54	79	16.9939
.(((((((.............))))	chr14:103396873-103397130(+)$1	1	165	190	23.1428
))).(((((............))))	chr19:39125543-39125805(+)$1	1	145	170	20.7469
((((((((.............))))	chr19:4659842-4660061(-)$1	1	38	63	22.8722
(.(((((((...........)))))	chr5:159492156-159492430(+)$1	1	69	94	19.7937
((((((((.............))))	chr17:1680586-1680805(+)$1	1	48	73	20.1534
(((((.(((............))).	chr1:1337322-1337586(-)$1	1	64	89	21.9194

#PSSM
d : 0.15	: : 0.12	c : 0.11	f : 0.07	" : 0.07	e : 0.07	[ : 0.04	# : 0.04	h : 0.03	a : 0.03	= : 0.03	b : 0.03	D : 0.03	G : 0.01	i : 0.01	& : 0.01	F : 0.01	( : 0.01	! : 0.01	g : 0.01	
d : 0.15	g : 0.11	f : 0.11	: : 0.09	c : 0.07	[ : 0.07	e : 0.07	h : 0.06	" : 0.06	# : 0.03	= : 0.03	! : 0.01	G : 0.01	i : 0.01	b : 0.01	( : 0.01	D : 0.01	
f : 0.22	g : 0.14	d : 0.09	e : 0.09	c : 0.07	[ : 0.07	h : 0.06	" : 0.06	# : 0.03	! : 0.01	i : 0.01	b : 0.01	a : 0.01	: : 0.01	( : 0.01	= : 0.01	D : 0.01	
f : 0.22	e : 0.19	g : 0.12	d : 0.07	h : 0.06	! : 0.06	[ : 0.04	" : 0.03	c : 0.03	# : 0.03	: : 0.03	a : 0.03	b : 0.01	( : 0.01	= : 0.01	
f : 0.22	e : 0.20	d : 0.15	g : 0.12	! : 0.09	h : 0.06	[ : 0.06	" : 0.03	c : 0.01	= : 0.01	
e : 0.20	f : 0.20	d : 0.14	g : 0.12	c : 0.12	h : 0.06	! : 0.06	b : 0.03	= : 0.01	[ : 0.01	
e : 0.19	f : 0.19	d : 0.15	c : 0.14	g : 0.12	h : 0.06	b : 0.04	[ : 0.03	! : 0.03	= : 0.01	
e : 0.15	d : 0.15	c : 0.15	f : 0.14	g : 0.12	h : 0.06	b : 0.04	w : 0.04	[ : 0.03	a : 0.03	y : 0.01	= : 0.01	
v : 0.25	^ : 0.14	w : 0.11	u : 0.09	y : 0.04	b : 0.04	x : 0.04	t : 0.04	e : 0.03	f : 0.03	h : 0.03	d : 0.03	c : 0.03	g : 0.03	a : 0.01	
u : 0.26	v : 0.25	^ : 0.14	w : 0.11	t : 0.07	y : 0.04	x : 0.04	d : 0.01	c : 0.01	b : 0.01	
u : 0.26	v : 0.25	^ : 0.14	t : 0.12	w : 0.11	y : 0.04	x : 0.04	
u : 0.26	v : 0.25	^ : 0.14	t : 0.12	w : 0.11	y : 0.04	x : 0.04	
u : 0.26	v : 0.25	^ : 0.14	t : 0.12	w : 0.11	y : 0.04	x : 0.04	
u : 0.26	v : 0.25	^ : 0.14	t : 0.12	w : 0.11	y : 0.04	x : 0.04	
u : 0.26	v : 0.25	^ : 0.14	t : 0.12	w : 0.11	y : 0.04	x : 0.04	
u : 0.26	v : 0.25	^ : 0.14	t : 0.12	w : 0.11	y : 0.04	x : 0.04	
u : 0.26	v : 0.25	^ : 0.14	t : 0.12	w : 0.11	y : 0.04	x : 0.04	
u : 0.26	v : 0.25	^ : 0.14	t : 0.12	w : 0.11	y : 0.04	x : 0.04	
u : 0.26	v : 0.25	^ : 0.14	t : 0.12	w : 0.11	y : 0.04	x : 0.04	
u : 0.26	v : 0.25	^ : 0.14	w : 0.11	t : 0.07	y : 0.04	x : 0.04	e : 0.01	d : 0.01	c : 0.01	
v : 0.25	u : 0.17	^ : 0.14	w : 0.11	y : 0.04	x : 0.04	f : 0.04	t : 0.04	d : 0.03	c : 0.03	e : 0.01	b : 0.01	a : 0.01	g : 0.01	
e : 0.14	^ : 0.14	c : 0.14	f : 0.12	b : 0.07	d : 0.07	w : 0.06	y : 0.04	x : 0.04	g : 0.04	h : 0.03	a : 0.01	2 : 0.01	= : 0.01	
e : 0.14	^ : 0.14	f : 0.14	c : 0.12	d : 0.07	h : 0.06	b : 0.06	g : 0.06	y : 0.04	x : 0.04	] : 0.03	3 : 0.01	2 : 0.01	= : 0.01	
e : 0.17	f : 0.15	^ : 0.14	c : 0.12	g : 0.09	d : 0.09	h : 0.06	3 : 0.04	y : 0.03	] : 0.03	4 : 0.01	= : 0.01	
f : 0.19	e : 0.17	^ : 0.14	d : 0.11	] : 0.11	g : 0.09	h : 0.06	3 : 0.04	4 : 0.01	2 : 0.01	c : 0.01	= : 0.01	

#score	1276.9540085454298
#seq	63
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_CDS_m1_run2.txt

#BEAR
ffff&&&&&&&dddd[ddddbboooooobb4444dddddd	chr19:11256918-11257166(-)$1	248	42	82	28.6850
eeee[a####dddd"""a[bbnnnnnbb]a22dddd333a	chr19:2272890-2273106(+)$1	216	151	191	28.2265
eee''''''''dddd!!cccqqqqqqqqccc]dddd8888	chr3:150344786-150345051(+)$1	265	56	96	24.5255
eeee[a####dddd"""a[bbnnnnnbb]a22dddd333a	chr19:2272906-2273128(+)$1	222	135	175	28.2265
ffff&&&&&&&dddd[ddddbboooooobb4444dddddd	chr19:11256978-11257233(-)$1	255	109	149	28.6850

#otherMatches

#Seq PSSM
CCUGAUUUUCGGCCUCAGCUCCUAGAGUGGCCUCAGCUAG	chr19:11256918-11257166(-)$1	248	42	82	28.6850
AGACCCGACGCUUGCUUCAUGGCCUACACGUUCGAGAGAG	chr19:2272890-2273106(+)$1	216	151	191	28.2265
GCAACAACUUGUUCAAAUUCUUGACAAUGAAAUGAAGCUC	chr3:150344786-150345051(+)$1	265	56	96	24.5255
AGACCCGACGCUUGCUUCAUGGCCUACACGUUCGAGAGAG	chr19:2272906-2273128(+)$1	222	135	175	28.2265
CCUGAUUUUCGGCCUCAGCUCCUAGAGUGGCCUCAGCUAG	chr19:11256978-11257233(-)$1	255	109	149	28.6850

#DB
((((.......((((.((((((......))....))))))	chr19:11256918-11257166(-)$1	1	42	82	28.6850
((((.(....((((...(.((.....)).)..))))...)	chr19:2272890-2273106(+)$1	1	151	191	28.2265
(((........((((..(((........))).))))....	chr3:150344786-150345051(+)$1	1	56	96	24.5255
((((.(....((((...(.((.....)).)..))))...)	chr19:2272906-2273128(+)$1	1	135	175	28.2265
((((.......((((.((((((......))....))))))	chr19:11256978-11257233(-)$1	1	109	149	28.6850

#PSSM
e : 0.60	f : 0.40	
e : 0.60	f : 0.40	
e : 0.60	f : 0.40	
f : 0.40	e : 0.40	' : 0.20	
& : 0.40	[ : 0.40	' : 0.20	
& : 0.40	a : 0.40	' : 0.20	
& : 0.40	# : 0.40	' : 0.20	
& : 0.40	# : 0.40	' : 0.20	
& : 0.40	# : 0.40	' : 0.20	
& : 0.40	# : 0.40	' : 0.20	
& : 0.40	d : 0.40	' : 0.20	
d : 1.00	
d : 1.00	
d : 1.00	
d : 0.60	" : 0.40	
[ : 0.40	" : 0.40	! : 0.20	
d : 0.40	" : 0.40	! : 0.20	
d : 0.40	a : 0.40	c : 0.20	
d : 0.40	[ : 0.40	c : 0.20	
d : 0.40	b : 0.40	c : 0.20	
b : 0.80	q : 0.20	
b : 0.40	n : 0.40	q : 0.20	
o : 0.40	n : 0.40	q : 0.20	
o : 0.40	n : 0.40	q : 0.20	
o : 0.40	n : 0.40	q : 0.20	
o : 0.40	n : 0.40	q : 0.20	
o : 0.40	b : 0.40	q : 0.20	
o : 0.40	b : 0.40	q : 0.20	
b : 0.40	] : 0.40	c : 0.20	
b : 0.40	a : 0.40	c : 0.20	
4 : 0.40	2 : 0.40	c : 0.20	
4 : 0.40	2 : 0.40	] : 0.20	
d : 0.60	4 : 0.40	
d : 0.60	4 : 0.40	
d : 1.00	
d : 1.00	
d : 0.40	3 : 0.40	8 : 0.20	
d : 0.40	3 : 0.40	8 : 0.20	
d : 0.40	3 : 0.40	8 : 0.20	
d : 0.40	a : 0.40	8 : 0.20	

#score	138.34883244266
#seq	5
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_transcript_m3_run1.txt

#BEAR
==========!!bboooooobb22==========	chr3:71005194-71005439(-)$1	245	108	142	19.5158
::==========[aooooooa]==========::	chr1:115292454-115292723(-)$1	269	105	139	14.2332
d[a[dddd"""cccoooooocccdddd]a]dddd	chr16:50655529-50655773(+)$1	244	76	110	13.9480
ggggggiiiiiiiiinnnnniiiiiiiii4444g	chr5:179156198-179156445(+)$1	247	198	232	12.5617
:==========[cccnnnnnccc]==========	chr2:228388555-228388813(+)$1	258	199	233	14.3362
====[ccc[bb[bboooooobb]bb22ccc]===	chr2:232319618-232319876(-)$1	258	114	148	16.2581
hhhhhhh$$$$$bboooooobb4444hhhhhhhh	chr2:27424333-27424606(-)$1	273	133	167	13.4350
iii$$$$$ccc[bboooooobbccc4444iiiii	chr7:6442893-6443185(+)$1	292	245	279	16.5245
=====bb[ddddoooooodddd22bb]=======	chr11:130013516-130013762(+)$1	246	188	222	12.9223
==============oooooo==============	chr12:46753796-46754015(-)$1	219	18	52	19.1721
ccc####ccc!!ddddllldddd22ccc333ccc	chr12:9231835-9232087(-)$1	252	0	34	11.1604
======="""bbqqqqqqqqbb333=========	chr5:42800453-42800682(-)$1	229	19	53	13.4373
========="""cccmmmmccc333=========	chr4:177253110-177253383(+)$1	273	117	151	15.2509
:=============oooooo=============:	chr7:45932745-45932962(+)$1	217	18	52	17.1836
gggggg[ccc!!cccmmmmccc4444ccc]gggg	chr6:1314799-1315016(+)$1	217	70	104	12.4177
===========[bboooooobb]===========	chr20:4833073-4833336(-)$1	263	211	245	19.5205
b[bb[==========lll==========]bb]bb	chr16:46964539-46964777(+)$1	238	191	225	12.4115
============bboooooobb4444========	chr6:32948860-32949097(+)$1	237	12	46	19.8159
!dddd[ccc[a[bboooooobb]a]ccc333ddd	chr5:137088363-137088622(-)$1	259	51	85	15.5508
iiii[ccc[eeeeeooooooeeeee]ccc333ii	chr11:2151524-2151757(-)$1	233	181	215	15.3394
iiiiiiiiibbrrrrrrrrrbb]iiiiiiiiibb	chr6:159046706-159046981(+)$1	275	177	211	12.2585
##dddd####ddddoooooodddd333dddd444	chr17:1658400-1658646(+)$1	246	109	143	15.1893
dddd$$$$$eeeeeooooooeeeee4444dddd]	chr1:228286641-228286904(+)$1	263	57	91	13.3337
""bb!!ccc[ddddoooooodddd]ccc22bb33	chr8:22879710-22879963(-)$1	253	27	61	14.0185
iiiiiiii[eeeeeooooooeeeee22iiiiiii	chr6:64237902-64238164(+)$1	262	33	67	16.0870
e[dddd[ccc!!bboooooobb22cccdddd]ee	chr12:46755989-46756231(-)$1	242	101	135	14.7838
c[bbccc[ffffffooooooffffff]ccc]bb]	chr22:38887857-38888116(-)$1	259	85	119	12.5024
=======$$$$$ddddllldddd4444=======	chr5:52390228-52390504(+)$1	276	13	47	14.0560
ccc[eeeee"""bboooooobb333eeeee]ccc	chr2:85770459-85770718(+)$1	259	115	149	15.1991
[eeeee!!a!!cccnnnnnccc22a4444eeeee	chr1:207966878-207967161(+)$1	283	54	88	12.1474
!eeeee[a!!bbbboooooobb]bb22a]eeeee	chr3:171783783-171784072(+)$1	289	175	209	14.4110
e[dddd[ccc!!bboooooobb22cccdddd]ee	chr12:46756042-46756264(-)$1	222	134	168	14.7838
==========xxxxxxxxxxxxxxx=========	chr6:109688572-109688845(-)$1	273	167	201	11.9152
eeeeeiiiiiiiiiooooooiiiiiiiiiFFFFF	chr2:216225871-216226108(-)$1	237	88	122	12.9552
ee[===========oooooo===========eee	chr3:47057997-47058278(-)$1	281	56	90	17.8196
ee[dddd####cccooooooccc4444dddd]ee	chr22:38615385-38615631(-)$1	246	19	53	15.6095
ggggg"""dddd[aooooooa]dddd333ggggg	chr2:135209477-135209755(+)$1	278	63	97	15.4264
:=============oooooo=============:	chr7:45932707-45932945(+)$1	238	56	90	17.1836
:eeeee"""eeeeeooooooeeeee4444eeeee	chr5:37327592-37327848(-)$1	256	219	253	13.7554
$eeeee####ddddoooooodddd4444eeeee2	chr2:20192623-20192913(-)$1	290	86	120	15.0541
====####ffffffooooooffffff========	chr3:113439877-113440128(-)$1	251	131	165	15.7457
f[ccc!!cccddddoooooodddd]ccc22ccc2	chr20:34312324-34312575(-)$1	251	165	199	14.3860
:ccc[bb!!bb[bboooooobbbb333bb]cccD	chr17:53350001-53350215(+)$1	214	143	177	12.8951
cc[ccc!!bb!!bboooooobb4444bb22ccc]	chr17:31268399-31268657(+)$1	258	79	113	15.9713
Fggggggg!!ddddoooooodddd22ggggggg:	chr5:96369401-96369657(+)$1	256	7	41	14.0770
iiiiiiiii"""bboooooobbiiiiiiiii:ee	chrX:70764420-70764687(+)$1	267	17	51	16.9028
ggggggg!!eeeeeooooooeeeee]ggggggg2	chr17:66527931-66528185(+)$1	254	83	117	14.9728
cc[ddddbb[ddddooooooddddbb333dddd2	chrX:132699151-132699428(-)$1	277	236	270	13.0354
"""bb[dddd[cccoooooocccdddd]bb]ggg	chr2:38829334-38829589(-)$1	255	11	45	13.0795
======####ddddoooooodddd==========	chr13:107211338-107211587(-)$1	249	29	63	18.3340
ggggg[ccc"""cccnnnnnccc4444ccc22gg	chr11:65271627-65271888(+)$1	261	53	87	13.0298

#otherMatches

#Seq PSSM
GUUCUUUUUUUAGAUAUUGUUCCUAAAAAGGAAU	chr3:71005194-71005439(-)$1	245	108	142	19.5158
AGUGCUGUACUGUGAGAUUGCCCGGUACAGCAGC	chr1:115292454-115292723(-)$1	269	105	139	14.2332
AGCUGAAGUUUGAAGUAAGUUUCCUUUUGGUGCU	chr16:50655529-50655773(+)$1	244	76	110	13.9480
CACUUGGGAGGGUCAGGCUGUGGCCUUCUGGAGC	chr5:179156198-179156445(+)$1	247	198	232	12.5617
UCCAAUGGUUUGUUAUACAUUAAGAAAUUGUUGG	chr2:228388555-228388813(+)$1	258	199	233	14.3362
UUAACAUUUCAAGGGCAAUACCGUGUUGGUUUUG	chr2:232319618-232319876(-)$1	258	114	148	16.2581
GGGUCUUGCUAAGGGAUGGGCCACCAGAGGCCCC	chr2:27424333-27424606(-)$1	273	133	167	13.4350
CUUUCCAUGUUACUUUAUUCAGAGCUAAUAAGUG	chr7:6442893-6443185(+)$1	292	245	279	16.5245
AUAUGCAGGCUGUCGUUCCGGUUAUGUUGUGUAA	chr11:130013516-130013762(+)$1	246	188	222	12.9223
UGCAAUUGGGUAAAACAGGGUUUAUUCAGUUGCA	chr12:46753796-46754015(-)$1	219	18	52	19.1721
UCUCCAACCUCCAAUAAAAUAUUUAAGGCUCAGA	chr12:9231835-9232087(-)$1	252	0	34	11.1604
AUAGAAAUAUUGACUCAAACCAUAUUUUUUAUGA	chr5:42800453-42800682(-)$1	229	19	53	13.4373
GGGGGAGGUUAGUUACACUUAAAAUAUCUUCUCC	chr4:177253110-177253383(+)$1	273	117	151	15.2509
UUuauauauauauguauauguauauauauauaGU	chr7:45932745-45932962(+)$1	217	18	52	17.1836
CAAGUGUGauuuuuauuuuuaauauuauuuuauu	chr6:1314799-1315016(+)$1	217	70	104	12.4177
GUUUAAGUAUUUUAAAAAUAUGUAAUAUUUGGAC	chr20:4833073-4833336(-)$1	263	211	245	19.5205
UUUACACAGUUUUUUAAAAAGAGACUGUAUACAC	chr16:46964539-46964777(+)$1	238	191	225	12.4115
AGGCUGGGGGGAGGGUGGGGCCGUGGUCCCCUCA	chr6:32948860-32949097(+)$1	237	12	46	19.8159
UGGACCUUGGUCGUUUUUAUACUAGCAAAAUGUC	chr5:137088363-137088622(-)$1	259	51	85	15.5508
UCAGAGGGGAGUGGAGAAGGCCACUGUCCGGCCU	chr11:2151524-2151757(-)$1	233	181	215	15.3394
CUUCUAGCCCAGUAGACUCAUGAGGUUAGAGGGC	chr6:159046706-159046981(+)$1	275	177	211	12.2585
UAAGGUUUUUGUAGUGAUUUUUAUGCCACCUGAA	chr17:1658400-1658646(+)$1	246	109	143	15.1893
CUUUUUUCUUUUGUAUUUUGAUAAACACUGAAGC	chr1:228286641-228286904(+)$1	263	57	91	13.3337
GUACUUUGAGAUUUGGUUUGGGAUGUCAUUGUUU	chr8:22879710-22879963(-)$1	253	27	61	14.0185
UUUCUCCCCAGCCAAGAGCAUGGCUAUGGGAGAA	chr6:64237902-64238164(+)$1	262	33	67	16.0870
UCCUUCUGCCUUCUAUAUCAAGUUGGUGAAGAAA	chr12:46755989-46756231(-)$1	242	101	135	14.7838
GUAUAUGUAUCUUUUGGUUUAAAGAUUCGUCAUU	chr22:38887857-38888116(-)$1	259	85	119	12.5024
GUAUAUAUUGCAUAACUAUGUUAGAAUUGUAUAU	chr5:52390228-52390504(+)$1	276	13	47	14.0560
GUAUUUGUUGAGCCAGGGACGGAAAAACAACUAU	chr2:85770459-85770718(+)$1	259	115	149	15.1991
CUGAAUAGAUUCCACAACCUGGUUUGCCAGUUCA	chr1:207966878-207967161(+)$1	283	54	88	12.1474
GUUCUGUCUUCCCAUGAUUCUGUGGUUGCUAGGG	chr3:171783783-171784072(+)$1	289	175	209	14.4110
UCCUUCUGCCUUCUAUAUCAAGUUGGUGAAGAAA	chr12:46756042-46756264(-)$1	222	134	168	14.7838
GCAGAGGCUUUAAGUAGUUUAAAAUGGGCUUUUG	chr6:109688572-109688845(-)$1	273	167	201	11.9152
GAAGUGAUUCUAAGAUUUGGUUUGGGAUCAAUAG	chr2:216225871-216226108(-)$1	237	88	122	12.9552
AUAUUUUAAUGUAUAUGUGAAUAUAUUGAAAAUA	chr3:47057997-47058278(-)$1	281	56	90	17.8196
GACGGGAACAUGUGCCCGACCGCUCCAUCCCCUC	chr22:38615385-38615631(-)$1	246	19	53	15.6095
AGAUAUUAGUCAGUUUCUUUAGUGAUAUUUGUUU	chr2:135209477-135209755(+)$1	278	63	97	15.4264
UUuauauauauauguauauguauauauauauaGU	chr7:45932707-45932945(+)$1	238	56	90	17.1836
AUUUUAGUUUUAGCUCACUUGUUGAUCAAUAAAA	chr5:37327592-37327848(-)$1	256	219	253	13.7554
UUAAUACUCAUGCAUUCUUUUGCACACCUGUUAU	chr2:20192623-20192913(-)$1	290	86	120	15.0541
UUAGUGUUAUACUUUGGUCUAAGUAUUUGAGUUA	chr3:113439877-113440128(-)$1	251	131	165	15.7457
GUGACUGCUGCUCAUUACGUUGAGUCGGAUGUUU	chr20:34312324-34312575(-)$1	251	165	199	14.3860
UGAGGUGAAGCUCCGCUUAAGGGCGUGCAGUUCG	chr17:53350001-53350215(+)$1	214	143	177	12.8951
ccuggccuguuucauuuauuuguauuaucugccu	chr17:31268399-31268657(+)$1	258	79	113	15.9713
AAGAGAGUAGUUGAUUAGCUUCAGGGAUUCUUUG	chr5:96369401-96369657(+)$1	256	7	41	14.0770
GACCUGGGGAACCUGCUCAAAGCCCUGGGUCGCU	chrX:70764420-70764687(+)$1	267	17	51	16.9028
UGUGAUUUAUAUAUAAGGUAAUGUAGGGUUAUAU	chr17:66527931-66528185(+)$1	254	83	117	14.9728
CUCCCAUACAUGUGAAAUCCCACAGUUUAAUGGA	chrX:132699151-132699428(-)$1	277	236	270	13.0354
UAACAAAGCGCGGCCCCCCUGUCCGCUGUGCCUG	chr2:38829334-38829589(-)$1	255	11	45	13.0795
UUUUGAUUUAAUGGAACUGGCUAUUUGAGAAGUG	chr13:107211338-107211587(-)$1	249	29	63	18.3340
AGUGUAUGAGACCUUGCAGUGAGUUUAUCAGCAU	chr11:65271627-65271888(+)$1	261	53	87	13.0298

#DB
((((((((((..((......))..))))))))))	chr3:71005194-71005439(-)$1	1	108	142	19.5158
..((((((((((.(......).))))))))))..	chr1:115292454-115292723(-)$1	1	105	139	14.2332
(.(.((((...(((......))))))).).))))	chr16:50655529-50655773(+)$1	1	76	110	13.9480
(((((((((((((((.....)))))))))....)	chr5:179156198-179156445(+)$1	1	198	232	12.5617
.((((((((((.(((.....))).))))))))))	chr2:228388555-228388813(+)$1	1	199	233	14.3362
((((.(((.((.((......)).))..))).)))	chr2:232319618-232319876(-)$1	1	114	148	16.2581
(((((((.....((......))....))))))))	chr2:27424333-27424606(-)$1	1	133	167	13.4350
(((.....(((.((......)))))....)))))	chr7:6442893-6443185(+)$1	1	245	279	16.5245
(((((((.((((......))))..)).)))))))	chr11:130013516-130013762(+)$1	1	188	222	12.9223
((((((((((((((......))))))))))))))	chr12:46753796-46754015(-)$1	1	18	52	19.1721
(((....(((..((((...))))..)))...)))	chr12:9231835-9232087(-)$1	1	0	34	11.1604
(((((((...((........))...)))))))))	chr5:42800453-42800682(-)$1	1	19	53	13.4373
(((((((((...(((....)))...)))))))))	chr4:177253110-177253383(+)$1	1	117	151	15.2509
.(((((((((((((......))))))))))))).	chr7:45932745-45932962(+)$1	1	18	52	17.1836
((((((.(((..(((....)))....))).))))	chr6:1314799-1315016(+)$1	1	70	104	12.4177
(((((((((((.((......)).)))))))))))	chr20:4833073-4833336(-)$1	1	211	245	19.5205
(.((.((((((((((...)))))))))).)).))	chr16:46964539-46964777(+)$1	1	191	225	12.4115
((((((((((((((......))....))))))))	chr6:32948860-32949097(+)$1	1	12	46	19.8159
.((((.(((.(.((......)).).)))...)))	chr5:137088363-137088622(-)$1	1	51	85	15.5508
((((.(((.(((((......))))).)))...))	chr11:2151524-2151757(-)$1	1	181	215	15.3394
(((((((((((.........)).)))))))))((	chr6:159046706-159046981(+)$1	1	177	211	12.2585
..((((....((((......))))...))))...	chr17:1658400-1658646(+)$1	1	109	143	15.1893
((((.....(((((......)))))....)))).	chr1:228286641-228286904(+)$1	1	57	91	13.3337
..((..(((.((((......)))).)))..))..	chr8:22879710-22879963(-)$1	1	27	61	14.0185
((((((((.(((((......)))))..)))))))	chr6:64237902-64238164(+)$1	1	33	67	16.0870
(.((((.(((..((......))..))))))).))	chr12:46755989-46756231(-)$1	1	101	135	14.7838
(.(((((.((((((......)))))).))).)).	chr22:38887857-38888116(-)$1	1	85	119	12.5024
(((((((.....((((...))))....)))))))	chr5:52390228-52390504(+)$1	1	13	47	14.0560
(((.(((((...((......))...))))).)))	chr2:85770459-85770718(+)$1	1	115	149	15.1991
.(((((..(..(((.....)))..)....)))))	chr1:207966878-207967161(+)$1	1	54	88	12.1474
.(((((.(..((((......)).))..).)))))	chr3:171783783-171784072(+)$1	1	175	209	14.4110
(.((((.(((..((......))..))))))).))	chr12:46756042-46756264(-)$1	1	134	168	14.7838
((((((((((...............)))))))))	chr6:109688572-109688845(-)$1	1	167	201	11.9152
)))))(((((((((......))))))))))))))	chr2:216225871-216226108(-)$1	1	88	122	12.9552
((.(((((((((((......))))))))))))))	chr3:47057997-47058278(-)$1	1	56	90	17.8196
((.((((....(((......)))....)))).))	chr22:38615385-38615631(-)$1	1	19	53	15.6095
(((((...((((.(......).))))...)))))	chr2:135209477-135209755(+)$1	1	63	97	15.4264
.(((((((((((((......))))))))))))).	chr7:45932707-45932945(+)$1	1	56	90	17.1836
.(((((...(((((......)))))....)))))	chr5:37327592-37327848(-)$1	1	219	253	13.7554
.(((((....((((......))))....))))).	chr2:20192623-20192913(-)$1	1	86	120	15.0541
((((....((((((......))))))))))))))	chr3:113439877-113440128(-)$1	1	131	165	15.7457
(.(((..(((((((......)))).)))..))).	chr20:34312324-34312575(-)$1	1	165	199	14.3860
.(((.((..((.((......))))...)).))))	chr17:53350001-53350215(+)$1	1	143	177	12.8951
((.(((..((..((......))....))..))).	chr17:31268399-31268657(+)$1	1	79	113	15.9713
((((((((..((((......))))..))))))).	chr5:96369401-96369657(+)$1	1	7	41	14.0770
(((((((((...((......))))))))))).((	chrX:70764420-70764687(+)$1	1	17	51	16.9028
(((((((..(((((......))))).))))))).	chr17:66527931-66528185(+)$1	1	83	117	14.9728
((.((((((.((((......))))))...)))).	chrX:132699151-132699428(-)$1	1	236	270	13.0354
...((.((((.(((......))))))).)).)))	chr2:38829334-38829589(-)$1	1	11	45	13.0795
((((((....((((......))))))))))))))	chr13:107211338-107211587(-)$1	1	29	63	18.3340
(((((.(((...(((.....)))....)))..))	chr11:65271627-65271888(+)$1	1	53	87	13.0298

#PSSM
= : 0.23	: : 0.11	g : 0.09	i : 0.09	c : 0.09	e : 0.09	d : 0.03	! : 0.03	" : 0.03	h : 0.01	b : 0.01	# : 0.01	[ : 0.01	$ : 0.01	f : 0.01	F : 0.01	
= : 0.29	e : 0.13	[ : 0.11	g : 0.11	i : 0.09	c : 0.09	d : 0.03	" : 0.03	: : 0.01	h : 0.01	# : 0.01	
= : 0.31	g : 0.11	i : 0.09	d : 0.09	e : 0.09	c : 0.07	[ : 0.07	b : 0.05	a : 0.01	h : 0.01	" : 0.01	
= : 0.33	d : 0.13	g : 0.11	e : 0.09	b : 0.07	i : 0.07	c : 0.05	[ : 0.03	h : 0.01	$ : 0.01	# : 0.01	
= : 0.29	d : 0.13	g : 0.11	e : 0.11	[ : 0.07	i : 0.05	c : 0.05	$ : 0.03	# : 0.03	h : 0.01	! : 0.01	b : 0.01	
= : 0.29	d : 0.11	e : 0.09	g : 0.07	c : 0.07	i : 0.07	[ : 0.05	$ : 0.03	b : 0.03	# : 0.03	! : 0.03	h : 0.01	" : 0.01	
= : 0.27	c : 0.11	i : 0.09	# : 0.09	d : 0.07	[ : 0.07	! : 0.05	$ : 0.03	b : 0.03	" : 0.03	g : 0.03	h : 0.01	e : 0.01	
= : 0.23	c : 0.19	i : 0.09	# : 0.09	$ : 0.07	! : 0.07	" : 0.05	d : 0.03	[ : 0.03	e : 0.01	a : 0.01	g : 0.01	b : 0.01	
= : 0.23	c : 0.17	i : 0.07	# : 0.07	! : 0.07	" : 0.05	[ : 0.05	$ : 0.05	d : 0.05	f : 0.03	b : 0.03	e : 0.01	a : 0.01	
= : 0.21	" : 0.11	c : 0.11	e : 0.09	b : 0.07	# : 0.07	d : 0.05	[ : 0.05	! : 0.05	i : 0.03	$ : 0.03	f : 0.03	
= : 0.17	d : 0.17	! : 0.13	" : 0.09	b : 0.09	e : 0.09	i : 0.03	$ : 0.03	f : 0.03	c : 0.01	a : 0.01	x : 0.01	# : 0.01	[ : 0.01	
d : 0.17	= : 0.13	! : 0.11	[ : 0.11	e : 0.09	c : 0.07	" : 0.07	i : 0.03	$ : 0.03	b : 0.03	f : 0.03	r : 0.01	x : 0.01	
b : 0.27	d : 0.17	c : 0.15	= : 0.09	e : 0.09	[ : 0.03	i : 0.03	f : 0.03	o : 0.01	q : 0.01	r : 0.01	x : 0.01	
b : 0.27	d : 0.17	c : 0.15	= : 0.09	e : 0.09	a : 0.03	i : 0.03	f : 0.03	o : 0.01	q : 0.01	r : 0.01	x : 0.01	
o : 0.76	c : 0.07	d : 0.03	i : 0.01	q : 0.01	= : 0.01	r : 0.01	n : 0.01	x : 0.01	
o : 0.76	n : 0.07	d : 0.03	m : 0.03	q : 0.01	l : 0.01	r : 0.01	x : 0.01	
o : 0.76	n : 0.07	l : 0.05	m : 0.03	q : 0.01	r : 0.01	x : 0.01	
o : 0.76	n : 0.07	l : 0.05	m : 0.03	q : 0.01	r : 0.01	x : 0.01	
o : 0.74	n : 0.07	l : 0.03	m : 0.03	d : 0.01	q : 0.01	= : 0.01	r : 0.01	x : 0.01	
o : 0.74	n : 0.05	d : 0.05	c : 0.05	q : 0.01	= : 0.01	r : 0.01	x : 0.01	
b : 0.31	d : 0.19	c : 0.15	= : 0.09	e : 0.09	a : 0.03	i : 0.03	f : 0.03	x : 0.01	
b : 0.31	d : 0.19	c : 0.15	= : 0.09	e : 0.09	] : 0.03	i : 0.03	f : 0.03	x : 0.01	
d : 0.19	= : 0.11	c : 0.11	2 : 0.09	] : 0.09	e : 0.09	4 : 0.07	i : 0.05	3 : 0.05	f : 0.03	x : 0.01	b : 0.01	
d : 0.19	= : 0.13	4 : 0.13	2 : 0.11	e : 0.09	i : 0.07	b : 0.05	3 : 0.05	f : 0.03	] : 0.01	c : 0.01	a : 0.01	x : 0.01	
= : 0.19	4 : 0.15	3 : 0.09	e : 0.09	i : 0.07	b : 0.07	d : 0.05	c : 0.05	] : 0.05	2 : 0.03	f : 0.03	a : 0.01	x : 0.01	
= : 0.25	4 : 0.23	c : 0.11	i : 0.07	2 : 0.07	d : 0.05	b : 0.03	] : 0.03	3 : 0.03	f : 0.03	e : 0.01	
= : 0.29	4 : 0.15	c : 0.15	i : 0.07	3 : 0.07	2 : 0.05	d : 0.03	] : 0.03	g : 0.03	h : 0.01	e : 0.01	b : 0.01	
= : 0.33	c : 0.17	i : 0.09	4 : 0.09	d : 0.07	] : 0.03	3 : 0.03	b : 0.03	g : 0.03	h : 0.01	e : 0.01	a : 0.01	
= : 0.31	i : 0.09	c : 0.09	4 : 0.07	3 : 0.07	d : 0.07	2 : 0.05	] : 0.03	e : 0.03	b : 0.03	g : 0.03	a : 0.01	h : 0.01	
= : 0.31	d : 0.11	e : 0.09	i : 0.07	] : 0.05	c : 0.05	3 : 0.05	2 : 0.05	g : 0.05	b : 0.03	4 : 0.01	h : 0.01	F : 0.01	
= : 0.31	d : 0.13	] : 0.07	i : 0.07	g : 0.07	e : 0.07	3 : 0.05	c : 0.05	b : 0.03	4 : 0.01	h : 0.01	F : 0.01	2 : 0.01	
= : 0.31	c : 0.09	g : 0.09	e : 0.09	d : 0.07	] : 0.07	i : 0.05	4 : 0.03	b : 0.03	h : 0.01	3 : 0.01	F : 0.01	: : 0.01	2 : 0.01	
= : 0.29	e : 0.17	g : 0.11	c : 0.09	d : 0.07	i : 0.05	b : 0.05	4 : 0.03	: : 0.01	h : 0.01	3 : 0.01	F : 0.01	
= : 0.25	e : 0.15	g : 0.09	: : 0.07	2 : 0.07	i : 0.05	] : 0.05	d : 0.03	c : 0.03	b : 0.03	h : 0.01	4 : 0.01	3 : 0.01	F : 0.01	D : 0.01	

#score	755.9160348434865
#seq	51
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_CDS_m2_run1.txt

#BEAR
iiiiiiii^^^^^^^^^^^^^^^^^^^^^	chr19:45496131-45496399(+)$1	268	204	233	17.0069
==eeeee[axxxxxxxxxxxxxxxa]eee	chr20:25206119-25206389(+)$1	270	54	83	19.7760
dhhhhhhhhattttttttttta]hhhhhh	chr19:47341401-47341808(-)$1	407	29	58	19.0307
Egggggggbbtttttttttttbb]ggggg	chr20:368692-369010(+)$1	318	162	191	21.0511
dddd:eeeeeuuuuuuuuuuuueeeee::	chr9:139958955-139959219(-)$1	264	85	114	19.8837
!!ffffff^^^^^^^^^^^^^^^^^^fff	chr11:64894333-64894591(+)$1	258	34	63	17.9462
""ffffffyyyyyyyyyyyyyyyyfffff	chr22:37865739-37866038(-)$1	299	26	55	23.6271
cccdddd[avvvvvvvvvvvvva]dddd3	chr17:46137159-46137399(+)$1	240	165	194	22.4536
[ccc[a!!bbuuuuuuuuuuuubb333a]	chr12:56510457-56510691(+)$1	234	162	191	23.4284
!!a[eeeeevvvvvvvvvvvvveeeee]a	chr19:47778302-47778565(+)$1	263	142	171	23.0636
[dddd[ddddvvvvvvvvvvvvvdddd]d	chr1:228680741-228681000(+)$1	259	98	127	21.8404
dd[ffffffwwwwwwwwwwwwwwffffff	chr16:66965918-66966212(-)$1	294	176	205	22.9958
cc]ccceeeeettttttttttteeeee:f	chr20:34287523-34287771(+)$1	248	138	167	19.9754
ffffffffffvvvvvvvvvvvvvffffff	chr7:149576619-149576870(+)$1	251	204	233	22.8711
iiddddbbbbyyyyyyyyyyyyyyyybb]	chr19:58905844-58906062(+)$1	218	45	74	21.0933
==========ttttttttttt========	chr11:64532871-64533151(-)$1	280	53	82	22.1933
b[ddddyyyyyyyyyyyyyyyydddd]bb	chr2:27664569-27664913(+)$1	344	293	322	20.6974
cc"""fffffftttttttttttffffff2	chr19:16345695-16346062(+)$1	367	193	222	21.2847
:ffffff[bbtttttttttttbb]fffff	chrX:118925434-118925670(-)$1	236	40	69	20.9251
""a[ffffffvvvvvvvvvvvvvffffff	chr19:14203485-14203731(-)$1	246	166	195	23.6463
fffffddddwwwwwwwwwwwwwwdddd33	chr3:126261290-126261539(+)$1	249	165	194	21.9774
!!a[eeeeevvvvvvvvvvvvveeeee]a	chr19:47778246-47778487(+)$1	241	198	227	23.0636
eeeee[cccwwwwwwwwwwwwwwccc]ee	chr19:867890-868224(-)$1	334	168	197	22.7826
b[eeeee[bbuuuuuuuuuuuubbeeeee	chr17:6917529-6917789(+)$1	260	192	221	23.3087
ff$$$$$cccuuuuuuuuuuuucccffff	chr17:79826298-79826577(-)$1	279	117	146	22.7472
b[bb[eeeeewwwwwwwwwwwwwweeeee	chr16:4562347-4562627(-)$1	280	115	144	22.2204
GG:ggggggguuuuuuuuuuuuggggggg	chr16:4738780-4739002(+)$1	222	154	183	21.8349
====bb[cccvvvvvvvvvvvvvcccbb]	chr21:46935378-46935679(-)$1	301	143	172	22.7258
fff:ffffffxxxxxxxxxxxxxxxffff	chrX:105277465-105277730(-)$1	265	155	184	18.3260
b[ffffffyyyyyyyyyyyyyyyyfffff	chr19:1010546-1010815(-)$1	269	35	64	23.4407
b[ffffff^^^^^^^^^^^^^^^^^^^ff	chr19:47778365-47778636(+)$1	271	230	259	17.4730
:gggggggwwwwwwwwwwwwwwggggggg	chr14:21484864-21485190(-)$1	326	224	253	21.9945
ddd[ffffffuuuuuuuuuuuuffffffd	chr20:25206864-25207249(+)$1	385	64	93	23.2970
b!!bb!!cccxxxxxxxxxxxxxxxccc2	chr19:39220530-39220799(+)$1	269	111	140	19.1818
iiddddbbbbyyyyyyyyyyyyyyyybb]	chr19:58905812-58906044(+)$1	232	77	106	21.0933
e"""fffffftttttttttttffffffee	chr16:31501732-31501981(-)$1	249	67	96	21.6773
iiiiiiiiivvvvvvvvvvvvviiiiiii	chr16:31501595-31501897(-)$1	302	179	208	22.9473
b[gggggggyyyyyyyyyyyyyyyygggg	chr11:60703431-60703743(+)$1	312	165	194	23.5624
dddd[eeeeeuuuuuuuuuuuueeeeedd	chr19:3121240-3121494(+)$1	254	108	137	22.6976
fff:ffffffxxxxxxxxxxxxxxxffff	chrX:105277401-105277665(-)$1	264	90	119	18.3260
eeee####ccctttttttttttccc333e	chr16:74485845-74486141(-)$1	296	129	158	21.2813
d!!ggggggguuuuuuuuuuuuggggggg	chr1:11810169-11810438(+)$1	269	11	40	23.9719
"""cccyyyyyyyyyyyyyyyyccceeee	chr1:150238391-150238660(-)$1	269	37	66	22.1977
==="""dddduuuuuuuuuuuudddd333	chr17:73823525-73823822(-)$1	297	254	283	23.0833
#dddd!!cccvvvvvvvvvvvvvccc444	chr12:120534321-120534639(-)$1	318	262	291	22.9791
HHdddd[cccuuuuuuuuuuuucccdddd	chr22:41972966-41973400(-)$1	434	279	308	22.0385
gggggg^^^^^^^^^^^^^^^^^^^gggg	chr18:72187261-72187524(+)$1	263	71	100	17.4834
d"""ccc[ccctttttttttttcccccc3	chr5:10680692-10680961(-)$1	269	213	242	22.2017
ggggffffffwwwwwwwwwwwwwwfffff	chr16:633060-633399(+)$1	339	99	128	23.1474
:dddd[ddddtttttttttttdddd]ddd	chr9:130169501-130169817(+)$1	316	223	252	19.3893
eeee!!dddduuuuuuuuuuuuddddeee	chr16:56643116-56643400(+)$1	284	74	103	22.4968
""dddd!!bbtttttttttttbb22dddd	chr4:2930132-2930392(+)$1	260	201	230	20.7502
##gggggggvvvvvvvvvvvvvggggggg	chr3:196730110-196730400(-)$1	290	175	204	23.3820
$$$ffffffwwwwwwwwwwwwwwffffff	chr2:242511640-242511873(+)$1	233	46	75	22.8940

#otherMatches

#Seq PSSM
GGAGGCGCUGUCUGUCCCUCUGUCCCUCU	chr19:45496131-45496399(+)$1	268	204	233	17.0069
CUGGGGGCCAUUUUUCAUUACAUCGACUC	chr20:25206119-25206389(+)$1	270	54	83	19.7760
CCUGGCUGGCGAAAUCCGAGAGACCAGCC	chr19:47341401-47341808(-)$1	407	29	58	19.0307
UCUUGGGCCCUAUGUCCUCCUGGAGCCCG	chr20:368692-369010(+)$1	318	162	191	21.0511
CCUCUGGAUUCCACCUUCAUCUAGUCCUU	chr9:139958955-139959219(-)$1	264	85	114	19.8837
CAGGCAGGAAUAUGCUGACCUUUCACCCU	chr11:64894333-64894591(+)$1	258	34	63	17.9462
GGUGCCCGAUGAAUCCUGAACUGCUGGGC	chr22:37865739-37866038(-)$1	299	26	55	23.6271
GACCUGUGAGAGGAAGGGAAGGUGGCAGA	chr17:46137159-46137399(+)$1	240	165	194	22.4536
GUUGGCGAGUAGUAGCGAGGAGACGAAGG	chr12:56510457-56510691(+)$1	234	162	191	23.4284
CUGCCUCCCUCUCCUGCCUCCUGGGAGUC	chr19:47778302-47778565(+)$1	263	142	171	23.0636
GCAGGAGGCUGAGAAGGAGGAGGGGCUCC	chr1:228680741-228681000(+)$1	259	98	127	21.8404
UGUUUUCUUGAAUCACUCACAAUGAGAAA	chr16:66965918-66966212(-)$1	294	176	205	22.9958
CUUCGGCACCUUUUCCUGUCUCAGGUGAG	chr20:34287523-34287771(+)$1	248	138	167	19.9754
CAGUCAGCAGCUCUGCCACCAUCCUGCUG	chr7:149576619-149576870(+)$1	251	204	233	22.8711
UCGUGAGGCUGCCUUCCGGAACAUUAAGA	chr19:58905844-58906062(+)$1	218	45	74	21.0933
GGGGCGCCAGCUUGGGCUCUCCUGGCGCC	chr11:64532871-64533151(-)$1	280	53	82	22.1933
UCUGCACUUUGUUUACUUGUUUUGCACAG	chr2:27664569-27664913(+)$1	344	293	322	20.6974
CGUCUGCCUGCUCCCUGGACUCGCAGGCC	chr19:16345695-16346062(+)$1	367	193	222	21.2847
UCGGAAGCGCCUUCUAAGCUCGUUCUUCC	chrX:118925434-118925670(-)$1	236	40	69	20.9251
AAGAGGGGCUCACGCUUAACUCCAGCCCC	chr19:14203485-14203731(-)$1	246	166	195	23.6463
ugccuuuccgacaagacccccggggaaug	chr3:126261290-126261539(+)$1	249	165	194	21.9774
CUGCCUCCCUCUCCUGCCUCCUGGGAGUC	chr19:47778246-47778487(+)$1	241	198	227	23.0636
UCUCCUCGGUUUCCUUGCCUCACCCGCGG	chr19:867890-868224(-)$1	334	168	197	22.7826
CGAGAGACUGAAUCCCUUCUCCCAUCUCU	chr17:6917529-6917789(+)$1	260	192	221	23.3087
GUUCUAUCUCCCCGUCACACCCGAGGCCU	chr17:79826298-79826577(-)$1	279	117	146	22.7472
UGCUCAGUGGUCACUUUCCCGCUCCCACU	chr16:4562347-4562627(-)$1	280	115	144	22.2204
AGCCCUCGGCUCCCCAGACUUUGCCGAGG	chr16:4738780-4739002(+)$1	222	154	183	21.8349
CCUCAGUGCAUCCCCACGACCCCUGCCUC	chr21:46935378-46935679(-)$1	301	143	172	22.7258
UAGAUCUUUCAUGUUGUUGAUUUUGGAGA	chrX:105277465-105277730(-)$1	265	155	184	18.3260
CUGCCCGAUGACAUGAACAACAACUCGGG	chr19:1010546-1010815(-)$1	269	35	64	23.4407
ACCCGGGUAACUCUCCCUUCCACCCCAAC	chr19:47778365-47778636(+)$1	271	230	259	17.4730
ACUUCUGCUAUAACAAUAAACUGUAGAGG	chr14:21484864-21485190(-)$1	326	224	253	21.9945
CAUGAGCUGCUGUAAACUAUUUGUGGCUG	chr20:25206864-25207249(+)$1	385	64	93	23.2970
GCAGACCGGGCCCCCCUGAACCGCACCCC	chr19:39220530-39220799(+)$1	269	111	140	19.1818
UCGUGAGGCUGCCUUCCGGAACAUUAAGA	chr19:58905812-58906044(+)$1	232	77	106	21.0933
GGCUCCUCACCCCCACUUCCUGUGAGGCU	chr16:31501732-31501981(-)$1	249	67	96	21.6773
GGGCGGAGGACUGCCCACCCCACCUCUGC	chr16:31501595-31501897(-)$1	302	179	208	22.9473
CUGGGGCUGCCCCCUGCCUCCACUCCAGC	chr11:60703431-60703743(+)$1	312	165	194	23.5624
GGGGAUGUACAUCUCUCCCUCCGUACACU	chr19:3121240-3121494(+)$1	254	108	137	22.6976
UAGAUCUUUCAUGUUGUUGAUUUUGGAGA	chrX:105277401-105277665(-)$1	264	90	119	18.3260
AGACAAUGGCUUAUAAAGGUUUAGUGUGG	chr16:74485845-74486141(-)$1	296	129	158	21.2813
UCAGCAGAGGCGCCCGCAGAUCCCUUUGC	chr1:11810169-11810438(+)$1	269	11	40	23.9719
CCAAGACUCACCUCCCUUCCCCUCUGCAG	chr1:150238391-150238660(-)$1	269	37	66	22.1977
GGUGGUGGCCAUUACUAGAGGGGGCCUGG	chr17:73823525-73823822(-)$1	297	254	283	23.0833
ACAGAUUUCUUGUCCUGCCUUCUAGAUGC	chr12:120534321-120534639(-)$1	318	262	291	22.9791
GCCCAGAGUGUUCCCCAUGCUCCACCUGG	chr22:41972966-41973400(-)$1	434	279	308	22.0385
AGAAGGAAUCCUGCCCUCACCUCACCCUU	chr18:72187261-72187524(+)$1	263	71	100	17.4834
AACACCUGUGGGAGAGUAAGAACUAAGGG	chr5:10680692-10680961(-)$1	269	213	242	22.2017
CGGCAGGCCCUGCUAUCACACCUUGGGCU	chr16:633060-633399(+)$1	339	99	128	23.1474
UGCUCUGAGGACUCAGGAACACCUUCGAG	chr9:130169501-130169817(+)$1	316	223	252	19.3893
CCCUGUGGGCUGUGCCAAGUGUGCCCAGG	chr16:56643116-56643400(+)$1	284	74	103	22.4968
AAUGGAAUGCAAAAAAGCCAAGCCCUCCG	chr4:2930132-2930392(+)$1	260	201	230	20.7502
cAGAGCUCCGAUGCCCGCCCGGGGAGUUU	chr3:196730110-196730400(-)$1	290	175	204	23.3820
UAACGGUCUCCCUCUUCCCUCCCAGACUG	chr2:242511640-242511873(+)$1	233	46	75	22.8940

#DB
((((((((.....................	chr19:45496131-45496399(+)$1	1	204	233	17.0069
(((((((.(...............).)))	chr20:25206119-25206389(+)$1	1	54	83	19.7760
)(((((((((...........).))))))	chr19:47341401-47341808(-)$1	1	29	58	19.0307
((((((((((...........)).)))))	chr20:368692-369010(+)$1	1	162	191	21.0511
)))).(((((............)))))..	chr9:139958955-139959219(-)$1	1	85	114	19.8837
..((((((..................)))	chr11:64894333-64894591(+)$1	1	34	63	17.9462
..((((((................)))))	chr22:37865739-37866038(-)$1	1	26	55	23.6271
(((((((.(.............).)))).	chr17:46137159-46137399(+)$1	1	165	194	22.4536
.(((.(..((............))...).	chr12:56510457-56510691(+)$1	1	162	191	23.4284
..(.(((((.............))))).)	chr19:47778302-47778565(+)$1	1	142	171	23.0636
.((((.((((.............)))).)	chr1:228680741-228681000(+)$1	1	98	127	21.8404
((.((((((..............))))))	chr16:66965918-66966212(-)$1	1	176	205	22.9958
)).)))(((((...........))))).(	chr20:34287523-34287771(+)$1	1	138	167	19.9754
((((((((((.............))))))	chr7:149576619-149576870(+)$1	1	204	233	22.8711
((((((((((................)).	chr19:58905844-58906062(+)$1	1	45	74	21.0933
((((((((((...........))))))))	chr11:64532871-64533151(-)$1	1	53	82	22.1933
(.((((................)))).))	chr2:27664569-27664913(+)$1	1	293	322	20.6974
((...((((((...........)))))).	chr19:16345695-16346062(+)$1	1	193	222	21.2847
.((((((.((...........)).)))))	chrX:118925434-118925670(-)$1	1	40	69	20.9251
..(.((((((.............))))))	chr19:14203485-14203731(-)$1	1	166	195	23.6463
(((((((((..............))))..	chr3:126261290-126261539(+)$1	1	165	194	21.9774
..(.(((((.............))))).)	chr19:47778246-47778487(+)$1	1	198	227	23.0636
(((((.(((..............))).))	chr19:867890-868224(-)$1	1	168	197	22.7826
(.(((((.((............)))))))	chr17:6917529-6917789(+)$1	1	192	221	23.3087
((.....(((............)))))))	chr17:79826298-79826577(-)$1	1	117	146	22.7472
(.((.(((((..............)))))	chr16:4562347-4562627(-)$1	1	115	144	22.2204
)).(((((((............)))))))	chr16:4738780-4739002(+)$1	1	154	183	21.8349
((((((.(((.............))))).	chr21:46935378-46935679(-)$1	1	143	172	22.7258
))).((((((...............))))	chrX:105277465-105277730(-)$1	1	155	184	18.3260
(.((((((................)))))	chr19:1010546-1010815(-)$1	1	35	64	23.4407
(.((((((...................))	chr19:47778365-47778636(+)$1	1	230	259	17.4730
.(((((((..............)))))))	chr14:21484864-21485190(-)$1	1	224	253	21.9945
(((.((((((............)))))))	chr20:25206864-25207249(+)$1	1	64	93	23.2970
(..((..(((...............))).	chr19:39220530-39220799(+)$1	1	111	140	19.1818
((((((((((................)).	chr19:58905812-58906044(+)$1	1	77	106	21.0933
(...((((((...........))))))))	chr16:31501732-31501981(-)$1	1	67	96	21.6773
(((((((((.............)))))))	chr16:31501595-31501897(-)$1	1	179	208	22.9473
(.(((((((................))))	chr11:60703431-60703743(+)$1	1	165	194	23.5624
((((.(((((............)))))))	chr19:3121240-3121494(+)$1	1	108	137	22.6976
))).((((((...............))))	chrX:105277401-105277665(-)$1	1	90	119	18.3260
((((....(((...........)))...)	chr16:74485845-74486141(-)$1	1	129	158	21.2813
(..(((((((............)))))))	chr1:11810169-11810438(+)$1	1	11	40	23.9719
...(((................)))))))	chr1:150238391-150238660(-)$1	1	37	66	22.1977
(((...((((............))))...	chr17:73823525-73823822(-)$1	1	254	283	23.0833
.((((..(((.............)))...	chr12:120534321-120534639(-)$1	1	262	291	22.9791
((((((.(((............)))))))	chr22:41972966-41973400(-)$1	1	279	308	22.0385
((((((...................))))	chr18:72187261-72187524(+)$1	1	71	100	17.4834
(...(((.(((...........)))))).	chr5:10680692-10680961(-)$1	1	213	242	22.2017
))))((((((..............)))))	chr16:633060-633399(+)$1	1	99	128	23.1474
.((((.((((...........)))).)))	chr9:130169501-130169817(+)$1	1	223	252	19.3893
((((..((((............)))))))	chr16:56643116-56643400(+)$1	1	74	103	22.4968
..((((..((...........))..))))	chr4:2930132-2930392(+)$1	1	201	230	20.7502
..(((((((.............)))))))	chr3:196730110-196730400(-)$1	1	175	204	23.3820
...((((((..............))))))	chr2:242511640-242511873(+)$1	1	46	75	22.8940

#PSSM
d : 0.12	b : 0.12	f : 0.09	i : 0.07	= : 0.07	" : 0.07	e : 0.07	! : 0.05	c : 0.05	: : 0.05	[ : 0.03	# : 0.03	g : 0.03	E : 0.01	G : 0.01	H : 0.01	$ : 0.01	
d : 0.12	" : 0.11	f : 0.11	[ : 0.11	! : 0.09	i : 0.07	= : 0.07	g : 0.07	c : 0.07	e : 0.05	h : 0.01	G : 0.01	H : 0.01	# : 0.01	$ : 0.01	
d : 0.20	f : 0.16	g : 0.11	e : 0.09	" : 0.07	a : 0.05	= : 0.05	i : 0.03	c : 0.03	$ : 0.03	! : 0.03	h : 0.01	[ : 0.01	] : 0.01	b : 0.01	: : 0.01	
d : 0.20	f : 0.16	g : 0.14	e : 0.09	[ : 0.07	" : 0.07	c : 0.05	i : 0.03	= : 0.03	b : 0.03	: : 0.03	h : 0.01	$ : 0.01	
f : 0.27	d : 0.16	g : 0.12	e : 0.09	[ : 0.05	c : 0.05	i : 0.03	" : 0.03	b : 0.03	h : 0.01	: : 0.01	= : 0.01	$ : 0.01	# : 0.01	! : 0.01	
f : 0.27	e : 0.12	g : 0.12	d : 0.12	[ : 0.05	c : 0.05	! : 0.05	i : 0.03	h : 0.01	a : 0.01	= : 0.01	$ : 0.01	b : 0.01	# : 0.01	" : 0.01	
f : 0.27	e : 0.14	g : 0.11	d : 0.11	! : 0.07	i : 0.03	b : 0.03	y : 0.03	c : 0.03	[ : 0.03	h : 0.01	= : 0.01	$ : 0.01	# : 0.01	^ : 0.01	
f : 0.25	g : 0.11	e : 0.11	c : 0.11	[ : 0.09	d : 0.09	i : 0.03	! : 0.03	b : 0.03	y : 0.03	h : 0.01	= : 0.01	# : 0.01	^ : 0.01	
f : 0.18	c : 0.14	b : 0.12	e : 0.11	d : 0.09	^ : 0.07	y : 0.07	g : 0.07	a : 0.03	h : 0.01	= : 0.01	w : 0.01	i : 0.01	
f : 0.14	b : 0.12	c : 0.12	y : 0.09	v : 0.09	w : 0.09	^ : 0.07	e : 0.07	d : 0.07	g : 0.03	x : 0.01	a : 0.01	= : 0.01	
u : 0.20	v : 0.18	t : 0.12	y : 0.12	w : 0.12	^ : 0.07	x : 0.07	c : 0.03	e : 0.01	f : 0.01	
t : 0.20	u : 0.20	v : 0.18	y : 0.12	w : 0.12	^ : 0.07	x : 0.07	
t : 0.20	u : 0.20	v : 0.18	y : 0.12	w : 0.12	^ : 0.07	x : 0.07	
t : 0.20	u : 0.20	v : 0.18	y : 0.12	w : 0.12	^ : 0.07	x : 0.07	
t : 0.20	u : 0.20	v : 0.18	y : 0.12	w : 0.12	^ : 0.07	x : 0.07	
t : 0.20	u : 0.20	v : 0.18	y : 0.12	w : 0.12	^ : 0.07	x : 0.07	
t : 0.20	u : 0.20	v : 0.18	y : 0.12	w : 0.12	^ : 0.07	x : 0.07	
t : 0.20	u : 0.20	v : 0.18	y : 0.12	w : 0.12	^ : 0.07	x : 0.07	
t : 0.20	u : 0.20	v : 0.18	y : 0.12	w : 0.12	^ : 0.07	x : 0.07	
t : 0.20	u : 0.20	v : 0.18	y : 0.12	w : 0.12	^ : 0.07	x : 0.07	
t : 0.20	u : 0.20	v : 0.18	y : 0.12	w : 0.12	^ : 0.07	x : 0.07	
u : 0.20	v : 0.18	y : 0.12	w : 0.12	^ : 0.07	x : 0.07	t : 0.07	b : 0.05	a : 0.01	= : 0.01	f : 0.01	d : 0.01	
w : 0.11	b : 0.09	e : 0.09	y : 0.09	v : 0.09	c : 0.09	^ : 0.07	x : 0.07	d : 0.07	g : 0.07	f : 0.05	] : 0.01	a : 0.01	= : 0.01	i : 0.01	
c : 0.14	f : 0.12	d : 0.11	e : 0.09	y : 0.09	^ : 0.07	x : 0.07	g : 0.07	] : 0.05	b : 0.03	w : 0.03	h : 0.01	= : 0.01	i : 0.01	2 : 0.01	
f : 0.20	c : 0.14	e : 0.12	d : 0.12	g : 0.09	^ : 0.07	y : 0.05	x : 0.05	a : 0.01	h : 0.01	3 : 0.01	= : 0.01	i : 0.01	2 : 0.01	
f : 0.25	e : 0.14	d : 0.14	g : 0.12	c : 0.09	^ : 0.05	] : 0.03	3 : 0.03	y : 0.03	h : 0.01	= : 0.01	i : 0.01	
f : 0.27	e : 0.18	g : 0.12	d : 0.11	3 : 0.05	b : 0.05	^ : 0.03	] : 0.03	c : 0.03	h : 0.01	= : 0.01	i : 0.01	4 : 0.01	
f : 0.27	e : 0.12	g : 0.12	d : 0.09	b : 0.07	] : 0.05	3 : 0.05	: : 0.03	c : 0.03	^ : 0.01	h : 0.01	a : 0.01	= : 0.01	i : 0.01	4 : 0.01	
f : 0.25	e : 0.14	g : 0.12	d : 0.11	3 : 0.07	] : 0.07	a : 0.03	2 : 0.03	^ : 0.01	h : 0.01	: : 0.01	= : 0.01	b : 0.01	i : 0.01	4 : 0.01	

#score	1166.7666612919245
#seq	54
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_transcript_m3_run2.txt

#BEAR
ggggoooooogggg	chr14:21562324-21562583(-)$1	259	181	195	9.9648
ddddoooooodddd	chr17:40947148-40947485(+)$1	337	281	295	10.6652
ddddoooooodddd	chr19:39874338-39874620(+)$1	282	202	216	10.6652
ddddoooooodddd	chr19:42799007-42799376(+)$1	369	8	22	10.6652
gcccooooooccc]	chr17:39976234-39976464(+)$1	230	135	149	11.3381
!cccooooooccc2	chr10:76993924-76994232(-)$1	308	212	226	11.4885
[cccooooooccc]	chr22:22332173-22332418(-)$1	245	200	214	11.6200
cc[aooooooa]cc	chr7:7222404-7222676(+)$1	272	160	174	10.2251
f[bboooooobbff	chr4:6881975-6882220(+)$1	245	222	236	9.8876
!cccooooooccc2	chr2:216227281-216227546(-)$1	265	139	153	11.4885
[cccooooooccc]	chr6:30611992-30612248(+)$1	256	223	237	11.6200
[cccoooooocccd	chr19:10675682-10675935(-)$1	253	151	165	11.4386
!!bboooooobb]c	chrX:47088172-47088445(+)$1	273	157	171	10.6210
ddddoooooodddd	chr14:103573352-103573635(+)$1	283	190	204	10.6652
[cccooooooccc]	chr7:66134614-66134878(+)$1	264	128	142	11.6200
Dcccoooooocccd	chr11:61542453-61542811(+)$1	358	137	151	10.3997
ddddoooooodddd	chr16:74364740-74365039(-)$1	299	90	104	10.6652
[cccooooooccc]	chr17:27072475-27072788(+)$1	313	247	261	11.6200
d[bboooooobbdd	chr22:51155158-51155400(+)$1	242	195	209	10.5263
##bboooooobb33	chr10:1056716-1057009(+)$1	293	24	38	10.7359
f[bboooooobbff	chr4:152089966-152090219(-)$1	253	179	193	9.8876
ddddoooooodddd	chr22:25545386-25545669(+)$1	283	230	244	10.6652
[cccooooooccc]	chr8:30272506-30272843(+)$1	337	36	50	11.6200
!cccooooooccc2	chr4:1289341-1289743(+)$1	402	191	205	11.4885
iiiiooooooiiii	chr7:4828655-4829024(+)$1	369	309	323	10.1666
iiiiooooooiiii	chr6:30138326-30138653(+)$1	327	77	91	10.1666
d[bboooooobb]d	chr15:79221027-79221309(-)$1	282	219	233	10.4161
[cccooooooccc]	chr16:88525501-88525763(+)$1	262	97	111	11.6200
!!bboooooobb22	chr1:2490053-2490329(+)$1	276	96	110	10.5168
!cccooooooccc2	chr7:158300994-158301284(-)$1	290	200	214	11.4885
f[bboooooobbff	chr1:21315367-21315705(-)$1	338	211	225	9.8876
ggggoooooogggg	chr16:1249694-1249970(+)$1	276	95	109	9.9648
[cccooooooccc]	chr1:12656134-12656378(-)$1	244	102	116	11.6200
ddddoooooodddd	chr9:139297284-139297558(-)$1	274	148	162	10.6652
"cccooooooccc3	chr1:211433124-211433415(+)$1	291	35	49	11.5880
ddddoooooodddd	chr16:1509950-1510195(-)$1	245	218	232	10.6652
ddddoooooodddd	chr7:44807167-44807465(+)$1	298	121	135	10.6652
gg[aooooooa]gg	chr1:2176362-2176650(+)$1	288	244	258	9.9314
ccbboooooobb]c	chr3:30661038-30661323(+)$1	285	237	251	10.3223
ddddoooooodddd	chr20:62592791-62593069(-)$1	278	9	23	10.6652
#cccooooooccc3	chr9:136741663-136741922(-)$1	259	73	87	11.5355
[cccooooooccc]	chr4:457423-457678(-)$1	255	237	251	11.6200
""bboooooobbff	chr16:50667298-50667585(+)$1	287	228	242	10.2970
ddddoooooodddd	chr2:242425054-242425352(+)$1	298	214	228	10.6652
[cccooooooccc]	chr3:50313197-50313520(+)$1	323	265	279	11.6200
dcccooooooccc2	chr7:55536316-55536597(-)$1	281	203	217	11.2321
!cccooooooccc4	chr13:98039746-98040024(+)$1	278	176	190	11.5525
dd[aooooooa]dd	chr2:112706254-112706512(+)$1	258	64	78	10.2373
""bboooooobb]d	chr7:98740054-98740308(-)$1	254	120	134	10.5870
ddddoooooodddd	chr1:92237354-92237660(-)$1	306	169	183	10.6652
ggggoooooogggg	chr12:56716445-56716751(-)$1	306	21	35	9.9648
ddddoooooodddd	chr2:153477100-153477380(+)$1	280	118	132	10.6652
##bboooooobb44	chr19:440065-440366(-)$1	301	196	210	10.6147
"cccooooooccc]	chr9:138976647-138976931(-)$1	284	257	271	11.5903
ddddoooooodddd	chr22:51019964-51020279(-)$1	315	92	106	10.6652
""bboooooobb33	chr1:16946909-16947187(-)$1	278	179	193	10.8309
!cccoooooocccc	chr20:60898057-60898383(-)$1	326	193	207	11.3776
ccccooooooccc]	chr3:185362261-185362532(-)$1	271	156	170	11.3212
ddddoooooodddd	chr17:29421982-29422311(+)$1	329	219	233	10.6652
!!bboooooobb44	chr19:16940350-16940679(+)$1	329	197	211	10.8370
ddddoooooodddd	chr1:1686998-1687356(-)$1	358	200	214	10.6652
ddddoooooodddd	chr20:47894243-47894516(-)$1	273	209	223	10.6652
ddddoooooodddd	chr16:8770528-8770793(+)$1	265	98	112	10.6652
##bboooooobb33	chr16:25008877-25009155(-)$1	278	86	100	10.7359
ddddoooooodddd	chr7:45928513-45928768(+)$1	255	7	21	10.6652
[cccooooooccc]	chr19:53120143-53120420(-)$1	277	238	252	11.6200

#otherMatches

#Seq PSSM
GAGGUGUUUCUCUC	chr14:21562324-21562583(-)$1	259	181	195	9.9648
GGAGACUCCACUCU	chr17:40947148-40947485(+)$1	337	281	295	10.6652
CCACUACCUUGUGG	chr19:39874338-39874620(+)$1	282	202	216	10.6652
CUUUCCCUCCAAGG	chr19:42799007-42799376(+)$1	369	8	22	10.6652
UAGAAUUGACUCUG	chr17:39976234-39976464(+)$1	230	135	149	11.3381
CGCCUCCCACGGCC	chr10:76993924-76994232(-)$1	308	212	226	11.4885
cuggacuaggccaa	chr22:22332173-22332418(-)$1	245	200	214	11.6200
CGGCGGAACAGGUG	chr7:7222404-7222676(+)$1	272	160	174	10.2251
gagucccugugccc	chr4:6881975-6882220(+)$1	245	222	236	9.8876
UGCCAUCUCCGGCC	chr2:216227281-216227546(-)$1	265	139	153	11.4885
AGGACGACCUUCCC	chr6:30611992-30612248(+)$1	256	223	237	11.6200
GAGCUCACCUGCUG	chr19:10675682-10675935(-)$1	253	151	165	11.4386
CCUGUCAACCCACC	chrX:47088172-47088445(+)$1	273	157	171	10.6210
GCAGAUCUGACUGC	chr14:103573352-103573635(+)$1	283	190	204	10.6652
ugacuuccccgucu	chr7:66134614-66134878(+)$1	264	128	142	11.6200
UGGGUUACCUCCCU	chr11:61542453-61542811(+)$1	358	137	151	10.3997
UGCAGCCGAGUGCG	chr16:74364740-74365039(-)$1	299	90	104	10.6652
GAGCUGUGCUGCUG	chr17:27072475-27072788(+)$1	313	247	261	11.6200
CACUUACUACGGGC	chr22:51155158-51155400(+)$1	242	195	209	10.5263
CCUCCAUCCUGACU	chr10:1056716-1057009(+)$1	293	24	38	10.7359
AAUUUAAUUUGAUU	chr4:152089966-152090219(-)$1	253	179	193	9.8876
gcccugccuugggu	chr22:25545386-25545669(+)$1	283	230	244	10.6652
cuucuguccugaaa	chr8:30272506-30272843(+)$1	337	36	50	11.6200
ugugcccccucacc	chr4:1289341-1289743(+)$1	402	191	205	11.4885
UGGCCACACAGCUG	chr7:4828655-4829024(+)$1	369	309	323	10.1666
AGGCGCCACAGUUU	chr6:30138326-30138653(+)$1	327	77	91	10.1666
GCCUCCAUCCAGAC	chr15:79221027-79221309(-)$1	282	219	233	10.4161
CCAGCCCAUCCUGU	chr16:88525501-88525763(+)$1	262	97	111	11.6200
CUGACCCUUAUCCC	chr1:2490053-2490329(+)$1	276	96	110	10.5168
UGUUCUAAUCAGCU	chr7:158300994-158301284(-)$1	290	200	214	11.4885
cucaaacuccuggg	chr1:21315367-21315705(-)$1	338	211	225	9.8876
CCCUCACCCCAGGG	chr16:1249694-1249970(+)$1	276	95	109	9.9648
GUGGGAGCUGCCAG	chr1:12656134-12656378(-)$1	244	102	116	11.6200
uucuccccccAGAA	chr9:139297284-139297558(-)$1	274	148	162	10.6652
ccuccccUCAGAGC	chr1:211433124-211433415(+)$1	291	35	49	11.5880
CCCCUUCCCUGGGG	chr16:1509950-1510195(-)$1	245	218	232	10.6652
CCCAGCCCCAUGGG	chr7:44807167-44807465(+)$1	298	121	135	10.6652
ugaguggaaucgca	chr1:2176362-2176650(+)$1	288	244	258	9.9314
uccaucccacugug	chr3:30661038-30661323(+)$1	285	237	251	10.3223
CUGCGUCCAUGUAG	chr20:62592791-62593069(-)$1	278	9	23	10.6652
CUGCCAUCGUGCAC	chr9:136741663-136741922(-)$1	259	73	87	11.5355
uguguuaguuugcu	chr4:457423-457678(-)$1	255	237	251	11.6200
GCAGGCACCACUGG	chr16:50667298-50667585(+)$1	287	228	242	10.2970
CUCCCUCCCUGGAG	chr2:242425054-242425352(+)$1	298	214	228	10.6652
CCCUGAAUCAAGGA	chr3:50313197-50313520(+)$1	323	265	279	11.6200
AUGCUUACCUGCAG	chr7:55536316-55536597(-)$1	281	203	217	11.2321
AGAGUGACAUCUCC	chr13:98039746-98040024(+)$1	278	176	190	11.5525
gcugucgccucugc	chr2:112706254-112706512(+)$1	258	64	78	10.2373
CCGCCCCCUCGCUG	chr7:98740054-98740308(-)$1	254	120	134	10.5870
GAAGUGCCCCCUUC	chr1:92237354-92237660(-)$1	306	169	183	10.6652
AGUAUUUACCUGUU	chr12:56716445-56716751(-)$1	306	21	35	9.9648
AUCCCUUCCAGGAU	chr2:153477100-153477380(+)$1	280	118	132	10.6652
ggccuguccuggac	chr19:440065-440366(-)$1	301	196	210	10.6147
uggcucauuugcuc	chr9:138976647-138976931(-)$1	284	257	271	11.5903
GUACAUCCCAGUAC	chr22:51019964-51020279(-)$1	315	92	106	10.6652
UCGGAACAUCCCCU	chr1:16946909-16947187(-)$1	278	179	193	10.8309
CAGGCCCCCACCUU	chr20:60898057-60898383(-)$1	326	193	207	11.3776
GGCAAAGCAGUGCU	chr3:185362261-185362532(-)$1	271	156	170	11.3212
GGAGCCUGCACUCC	chr17:29421982-29422311(+)$1	329	219	233	10.6652
CUCGUCCCCUCGUU	chr19:16940350-16940679(+)$1	329	197	211	10.8370
GGGCCGCUCAGCCC	chr1:1686998-1687356(-)$1	358	200	214	10.6652
GCGCCUCUCAGCGC	chr20:47894243-47894516(-)$1	273	209	223	10.6652
CCUUCCCUCCAAGG	chr16:8770528-8770793(+)$1	265	98	112	10.6652
ccucaaggcagaaa	chr16:25008877-25009155(-)$1	278	86	100	10.7359
GCAGCAACCUCUGC	chr7:45928513-45928768(+)$1	255	7	21	10.6652
uguguuaguuugcu	chr19:53120143-53120420(-)$1	277	238	252	11.6200

#DB
((((......))))	chr14:21562324-21562583(-)$1	1	181	195	9.9648
((((......))))	chr17:40947148-40947485(+)$1	1	281	295	10.6652
((((......))))	chr19:39874338-39874620(+)$1	1	202	216	10.6652
((((......))))	chr19:42799007-42799376(+)$1	1	8	22	10.6652
((((......))).	chr17:39976234-39976464(+)$1	1	135	149	11.3381
.(((......))).	chr10:76993924-76994232(-)$1	1	212	226	11.4885
.(((......))).	chr22:22332173-22332418(-)$1	1	200	214	11.6200
((.(......).))	chr7:7222404-7222676(+)$1	1	160	174	10.2251
(.((......))))	chr4:6881975-6882220(+)$1	1	222	236	9.8876
.(((......))).	chr2:216227281-216227546(-)$1	1	139	153	11.4885
.(((......))).	chr6:30611992-30612248(+)$1	1	223	237	11.6200
.(((......))))	chr19:10675682-10675935(-)$1	1	151	165	11.4386
..((......)).)	chrX:47088172-47088445(+)$1	1	157	171	10.6210
((((......))))	chr14:103573352-103573635(+)$1	1	190	204	10.6652
.(((......))).	chr7:66134614-66134878(+)$1	1	128	142	11.6200
((((......)))(	chr11:61542453-61542811(+)$1	1	137	151	10.3997
((((......))))	chr16:74364740-74365039(-)$1	1	90	104	10.6652
.(((......))).	chr17:27072475-27072788(+)$1	1	247	261	11.6200
(.((......))))	chr22:51155158-51155400(+)$1	1	195	209	10.5263
..((......))..	chr10:1056716-1057009(+)$1	1	24	38	10.7359
(.((......))))	chr4:152089966-152090219(-)$1	1	179	193	9.8876
((((......))))	chr22:25545386-25545669(+)$1	1	230	244	10.6652
.(((......))).	chr8:30272506-30272843(+)$1	1	36	50	11.6200
.(((......))).	chr4:1289341-1289743(+)$1	1	191	205	11.4885
((((......))))	chr7:4828655-4829024(+)$1	1	309	323	10.1666
((((......))))	chr6:30138326-30138653(+)$1	1	77	91	10.1666
(.((......)).)	chr15:79221027-79221309(-)$1	1	219	233	10.4161
.(((......))).	chr16:88525501-88525763(+)$1	1	97	111	11.6200
..((......))..	chr1:2490053-2490329(+)$1	1	96	110	10.5168
.(((......))).	chr7:158300994-158301284(-)$1	1	200	214	11.4885
(.((......))))	chr1:21315367-21315705(-)$1	1	211	225	9.8876
((((......))))	chr16:1249694-1249970(+)$1	1	95	109	9.9648
.(((......))).	chr1:12656134-12656378(-)$1	1	102	116	11.6200
((((......))))	chr9:139297284-139297558(-)$1	1	148	162	10.6652
.(((......))).	chr1:211433124-211433415(+)$1	1	35	49	11.5880
((((......))))	chr16:1509950-1510195(-)$1	1	218	232	10.6652
((((......))))	chr7:44807167-44807465(+)$1	1	121	135	10.6652
((.(......).))	chr1:2176362-2176650(+)$1	1	244	258	9.9314
((((......)).)	chr3:30661038-30661323(+)$1	1	237	251	10.3223
((((......))))	chr20:62592791-62593069(-)$1	1	9	23	10.6652
.(((......))).	chr9:136741663-136741922(-)$1	1	73	87	11.5355
.(((......))).	chr4:457423-457678(-)$1	1	237	251	11.6200
..((......))))	chr16:50667298-50667585(+)$1	1	228	242	10.2970
((((......))))	chr2:242425054-242425352(+)$1	1	214	228	10.6652
.(((......))).	chr3:50313197-50313520(+)$1	1	265	279	11.6200
((((......))).	chr7:55536316-55536597(-)$1	1	203	217	11.2321
.(((......))).	chr13:98039746-98040024(+)$1	1	176	190	11.5525
((.(......).))	chr2:112706254-112706512(+)$1	1	64	78	10.2373
..((......)).)	chr7:98740054-98740308(-)$1	1	120	134	10.5870
((((......))))	chr1:92237354-92237660(-)$1	1	169	183	10.6652
((((......))))	chr12:56716445-56716751(-)$1	1	21	35	9.9648
((((......))))	chr2:153477100-153477380(+)$1	1	118	132	10.6652
..((......))..	chr19:440065-440366(-)$1	1	196	210	10.6147
.(((......))).	chr9:138976647-138976931(-)$1	1	257	271	11.5903
((((......))))	chr22:51019964-51020279(-)$1	1	92	106	10.6652
..((......))..	chr1:16946909-16947187(-)$1	1	179	193	10.8309
.(((......))))	chr20:60898057-60898383(-)$1	1	193	207	11.3776
((((......))).	chr3:185362261-185362532(-)$1	1	156	170	11.3212
((((......))))	chr17:29421982-29422311(+)$1	1	219	233	10.6652
..((......))..	chr19:16940350-16940679(+)$1	1	197	211	10.8370
((((......))))	chr1:1686998-1687356(-)$1	1	200	214	10.6652
((((......))))	chr20:47894243-47894516(-)$1	1	209	223	10.6652
((((......))))	chr16:8770528-8770793(+)$1	1	98	112	10.6652
..((......))..	chr16:25008877-25009155(-)$1	1	86	100	10.7359
((((......))))	chr7:45928513-45928768(+)$1	1	7	21	10.6652
.(((......))).	chr19:53120143-53120420(-)$1	1	238	252	11.6200

#PSSM
d : 0.34	[ : 0.16	! : 0.13	g : 0.07	" : 0.07	# : 0.06	c : 0.04	f : 0.04	i : 0.03	D : 0.01	
c : 0.39	d : 0.30	[ : 0.07	g : 0.06	! : 0.04	# : 0.04	" : 0.04	i : 0.03	
c : 0.36	d : 0.28	b : 0.22	g : 0.04	[ : 0.04	i : 0.03	
c : 0.36	d : 0.28	b : 0.22	g : 0.04	a : 0.04	i : 0.03	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.36	d : 0.28	b : 0.22	g : 0.04	a : 0.04	i : 0.03	
c : 0.36	d : 0.28	b : 0.22	g : 0.04	] : 0.04	i : 0.03	
c : 0.37	d : 0.31	g : 0.06	f : 0.06	] : 0.06	3 : 0.04	i : 0.03	4 : 0.03	2 : 0.01	
d : 0.37	] : 0.19	2 : 0.09	3 : 0.07	g : 0.06	c : 0.06	f : 0.06	4 : 0.04	i : 0.03	

#score	715.4938725393419
#seq	66
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF305BNZ_LARP7_UTR_m1_run1.txt

#BEAR
ccc[ccc%%%%%%ccc[ccc[bbnnnnnbb]cccccc444	chr7:111928769-111929038(+)$1	269	178	218	32.1716
dd!!bb"""bb!!ccc!!eeeeeooooooeeeeeccc]bb	chr7:111928580-111928812(+)$1	232	147	187	24.6340
ccc[ccc%%%%%%ccc[ccc[bbnnnnnbb]cccccc444	chr7:111928863-111929104(+)$1	241	84	124	32.1716
ccc[ccc%%%%%%ccc[ccc[bbnnnnnbb]cccccc444	chr7:111928904-111929109(+)$1	205	43	83	32.1716
dd!!bb"""bb!!ccc!!eeeeeooooooeeeeeccc]bb	chr7:111928612-111928819(+)$1	207	115	155	24.6340

#otherMatches

#Seq PSSM
gcuuccaagauuccagacacauccaaaugaagugcugcau	chr7:111928769-111929038(+)$1	269	178	218	32.1716
gguugauucggcugaucuggcuggcuaaguggcugucccc	chr7:111928580-111928812(+)$1	232	147	187	24.6340
gcuuccaagauuccagacacauccaaaugaagugcugcau	chr7:111928863-111929104(+)$1	241	84	124	32.1716
gcuuccaagauuccagacacauccaaaugaagugcugcau	chr7:111928904-111929109(+)$1	205	43	83	32.1716
gguugauucggcugaucuggcuggcuaaguggcugucccc	chr7:111928612-111928819(+)$1	207	115	155	24.6340

#DB
(((.(((......(((.(((.((.....)).))))))...	chr7:111928769-111929038(+)$1	1	178	218	32.1716
((..((...((..(((..(((((......)))))))).))	chr7:111928580-111928812(+)$1	1	147	187	24.6340
(((.(((......(((.(((.((.....)).))))))...	chr7:111928863-111929104(+)$1	1	84	124	32.1716
(((.(((......(((.(((.((.....)).))))))...	chr7:111928904-111929109(+)$1	1	43	83	32.1716
((..((...((..(((..(((((......)))))))).))	chr7:111928612-111928819(+)$1	1	115	155	24.6340

#PSSM
c : 0.60	d : 0.40	
c : 0.60	d : 0.40	
c : 0.60	! : 0.40	
[ : 0.60	! : 0.40	
c : 0.60	b : 0.40	
c : 0.60	b : 0.40	
c : 0.60	" : 0.40	
% : 0.60	" : 0.40	
% : 0.60	" : 0.40	
% : 0.60	b : 0.40	
% : 0.60	b : 0.40	
% : 0.60	! : 0.40	
% : 0.60	! : 0.40	
c : 1.00	
c : 1.00	
c : 1.00	
[ : 0.60	! : 0.40	
c : 0.60	! : 0.40	
c : 0.60	e : 0.40	
c : 0.60	e : 0.40	
[ : 0.60	e : 0.40	
b : 0.60	e : 0.40	
b : 0.60	e : 0.40	
n : 0.60	o : 0.40	
n : 0.60	o : 0.40	
n : 0.60	o : 0.40	
n : 0.60	o : 0.40	
n : 0.60	o : 0.40	
b : 0.60	o : 0.40	
b : 0.60	e : 0.40	
] : 0.60	e : 0.40	
c : 0.60	e : 0.40	
c : 0.60	e : 0.40	
c : 0.60	e : 0.40	
c : 1.00	
c : 1.00	
c : 1.00	
4 : 0.60	] : 0.40	
4 : 0.60	b : 0.40	
4 : 0.60	b : 0.40	

#score	145.78302858121998
#seq	5
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_CDS_m1_run1.txt

#BEAR
ggggggg"""a!!ddddmmmmdddd22a22ggggggg	chr5:179248446-179248795(+)$1	349	165	202	11.4878
======iiiiiiiiiddddllldddd]iiiiiiiii4	chr19:42401278-42401569(+)$1	291	123	160	12.1878
i!!eeeee!!ccc!!bbmmmmbb333ccc]eeeee]i	chr5:173043246-173043507(-)$1	261	93	130	11.3323
eee[ffffff[a[a[a[ammmma]a]a]a]ffffff3	chr18:19321473-19321727(+)$1	254	153	190	11.0383
iiiiiiiii[gggggggrrrrrrrrrggggggg]iii	chr8:145687739-145688007(-)$1	268	62	99	11.8191
ffdddd[bb[ccc[cccooooooccc]ccc]bb]ddd	chr16:75298068-75298374(-)$1	306	245	282	12.6220
=====[dddd[ffffffooooooffffff]dddd]==	chr6:31864774-31865112(-)$1	338	71	108	12.8862
eee####bb[gggggggnnnnnggggggg]bb00000	chr17:46986027-46986347(-)$1	320	112	149	10.7611
b!!aiiiiiiiii[cccnnnnnccc22iiiiiiiii]	chr10:31609023-31609265(+)$1	242	29	66	15.0898
iiiiiiii!!bb[cccooooooccc]bb333iiiiii	chr10:103603174-103603437(-)$1	263	208	245	15.4035
gggggggggdddd[cccmmmmccc22dddd]gggggg	chr2:231902498-231902754(+)$1	256	61	98	10.8334
cggggggg!!gggggggnnnnnggggggg333ggggg	chr20:3451843-3452093(+)$1	250	37	74	15.6419
[ffffff[bb!!a[cccoooooocccabb]ffffff]	chr19:49002197-49002498(-)$1	301	210	247	13.2688
ggg!!eeeee[ffffffooooooffffff]eeeee22	chr7:127670344-127670597(+)$1	253	13	50	12.5861
ddffffff[dddd[cccnnnnnccc]ddddffffff2	chr9:99212475-99212709(+)$1	234	143	180	11.9412
eeeee[a[ffffff[bbnnnnnbb]ffffffa]eeee	chr1:27023787-27024050(+)$1	263	197	234	11.4254
ggggg[bb!!eeeee[ammmma]eeeeebb]gggggg	chr9:33817607-33817864(+)$1	257	82	119	10.6468
b"""ccc!!ccc[ccc!!allla22cccccc333ccc	chr17:74533295-74533599(-)$1	304	4	41	12.5019
dd[ccc[bb[ggggggglllgggggggbb]ccc]ddd	chr19:58991523-58991791(-)$1	268	105	142	11.0366
cccggggggg!!a[eeeeellleeeee]a22gggggg	chr20:32255385-32255655(-)$1	270	120	157	11.8465
g[ccc[bb[ccc[cccooooooccc]ccc]bb]ccc]	chr9:139701033-139701323(-)$1	290	161	198	14.3117
[ffffff[cccffffffooooooffffff22cccfff	chr19:1467818-1468084(-)$1	266	186	223	12.6719
a!!eeeee####eeeeeooooooeeeee22eeeee22	chr13:28713103-28713375(+)$1	272	157	194	12.6803
c[bb[dddd"""eeeeennnnneeeee333dddd]bb	chr9:139702477-139702751(+)$1	274	84	121	11.5566
fff[ccc[cccffffffooooooffffff]ccc22cc	chr7:150777704-150777985(-)$1	281	87	124	12.9293
!!cccccc!!ccc[cccnnnnnccc]cccccc]ccc2	chr9:80646047-80646345(-)$1	298	41	78	15.0236
cc!!eeeee[ccc[cccnnnnnccc]ccc333eeeee	chr1:27022945-27023198(+)$1	253	207	244	15.1339
ff[a[a$$$$$gggggggmmmmggggggg333a]a]f	chr16:29998086-29998350(+)$1	264	120	157	11.4634
Cccc!!=============lll=============22	chr20:62518759-62519034(+)$1	275	235	272	12.5344
hh"""bb!!ccc[cccooooooccc]ccc]bb]hhhh	chr3:185826159-185826408(-)$1	249	92	129	13.5106
!!dddd"""bb[ddddoooooodddd]bb333ddddc	chr12:124873017-124873332(-)$1	315	3	40	11.5201
nnccciiiiiiiiicccnnnnnccc]iiiiiiiiiGG	chr16:67997747-67997993(-)$1	246	201	238	12.4284
ccc"""ffffff[ddddnnnnndddd]ffffff]ccc	chr19:1474682-1474941(-)$1	259	42	79	11.5586
eedddd####gggggggoooooogggggggdddd]ee	chr2:172016826-172017094(-)$1	268	178	215	13.0624
[bb[dddd"""ccccccnnnnnccc4444ccc333dd	chr11:63884821-63885122(-)$1	301	81	118	13.6542
ee"""dddd"""eeeeennnnneeeee333dddd22e	chr14:23451335-23451616(-)$1	281	102	139	12.2321
=========[ccccccooooooccc333ccc]=====	chr20:3451893-3452150(+)$1	257	78	115	15.8462
eeeee[ccc!!ccc[bbnnnnnbb22ccc22ccc]ee	chr2:219264947-219265181(+)$1	234	194	231	12.9386
ffffff[eeeee"""bbnnnnnbb333eeeeefffff	chr19:2425964-2426258(-)$1	294	155	192	10.8441
ee"""hhhhhhhh!!cccooooooccc333hhhhhhh	chr20:62371182-62371517(+)$1	335	184	221	11.0559
d[eeeeedddd!!cccooooooccc]dddd333eeee	chr3:142443399-142443644(+)$1	245	170	207	12.7439
========!!bb!!cccnnnnnccc22bb22======	chr16:87426116-87426425(+)$1	309	130	167	15.3390
cc[eeeee[gggggggooooooggggggg]eeeeecc	chr3:142443302-142443599(+)$1	297	34	71	13.7422
iiiiiiiidddd[cccoooooocccdddd]iiiiiii	chr16:2029107-2029382(+)$1	275	19	56	13.8493
"""ffffff"""eeeeennnnneeeeeffffff]ddd	chr17:76201421-76201657(+)$1	236	4	41	12.0927
[cccccc[ffffff[ccclllccc333ffffffccc]	chr4:3768416-3768676(+)$1	260	158	195	11.8263
eeeee[a####ffffffnnnnnffffff22a]eeeee	chr7:5460710-5460980(-)$1	270	109	146	13.0459
cffffff!!dddd[cccnnnnnccc22dddd22ffff	chr6:32936910-32937156(+)$1	246	125	162	12.1819
ggggggg[a[gggggggnnnnnggggggg]agggggg	chr3:98451573-98451827(+)$1	254	106	143	15.2310
ff]ccc:============lll============ddd	chr14:103576655-103576927(+)$1	272	135	172	11.8649
!ffffffa!!bbeeeeeooooooeeeee]bb4444a]	chr3:142443444-142443679(+)$1	235	23	60	11.9916
"a!!ccc[a[ccc[ccclllccc]ccca]ccc22a==	chr10:91404103-91404458(-)$1	355	158	195	12.5327
eeeee[ccc!!eeeeeooooooeeeee333ccc22ee	chr19:59081744-59082004(+)$1	260	140	177	13.1338
gga[eeeee[gggggggooooooggggggg]eeeee]	chr3:142443246-142443502(+)$1	256	89	126	14.0191

#otherMatches

#Seq PSSM
CGCGGGUAAACAAGCGCGGGGGUGCGGGGGACUCGCG	chr5:179248446-179248795(+)$1	349	165	202	11.4878
GCGGGGAGGUGGGUCAGGUUCCAUCUGGGCCCACCUC	chr19:42401278-42401569(+)$1	291	123	160	12.1878
GAACUGGCGCGGUGGGCGGCGGCGGAACUAGCCAGGC	chr5:173043246-173043507(-)$1	261	93	130	11.3323
AGCAGGACGGCGGCGAGGGCCAUGUGGGCACCGUCCG	chr18:19321473-19321727(+)$1	254	153	190	11.0383
gcccggggcggccgccgggcaggcggcggcggcggcu	chr8:145687739-145688007(-)$1	268	62	99	11.8191
UGGGCAUGGAGUCUGGGAUGGCACCCUGACCCCUUGC	chr16:75298068-75298374(-)$1	306	245	282	12.6220
gggggcggggccggggcgcggaggccccgcccccUCC	chr6:31864774-31865112(-)$1	338	71	108	12.8862
GGGAAGGUCGAGCCCCGGAGCUCGGGGCUGGGGGAGG	chr17:46986027-46986347(-)$1	320	112	149	10.7611
CUGGGGACUCCGCGGCGAGCCCCGCGAGUGGGGUCCA	chr10:31609023-31609265(+)$1	242	29	66	15.0898
CGGGAGGGAGGGUGGAUUCCAUUCCUCCAGACCCUUC	chr10:103603174-103603437(-)$1	263	208	245	15.4035
gcggcggcggcggcggcgCGCGCCAUCCGCUCGCCGC	chr2:231902498-231902754(+)$1	256	61	98	10.8334
CUGGGGGCCGGGCUGCGCCUCCCGCGGCUGCUGUCUC	chr20:3451843-3452093(+)$1	250	37	74	15.6419
UGCCUGCCACUGGAGCGGGGGGACGCCGUAGCAGGCU	chr19:49002197-49002498(-)$1	301	210	247	13.2688
CCGGAUGGAGUUCCUGCCCAACUGCAGGACCUCCAGG	chr7:127670344-127670597(+)$1	253	13	50	12.5861
UUCGGCUGCGUGGUGGCCAACCGCUUCCAUCAGCUGC	chr9:99212475-99212709(+)$1	234	143	180	11.9412
CCGGGAGCAGCGGCGGCGGGGGGCAGCCGCUCGCCCG	chr1:27023787-27024050(+)$1	263	197	234	11.4254
UCCGGCCCGGCCGGUGCGUGAGGACUGGGGCCCGGGC	chr9:33817607-33817864(+)$1	257	82	119	10.6468
CGAGCGCAGGGAGCGGAGCGAGGAGCUGUCCGAGGCG	chr17:74533295-74533599(-)$1	304	4	41	12.5019
UGGGCUGAGUGGGCACUGGCGGUGUCCCUGGGCGCAC	chr19:58991523-58991791(-)$1	268	105	142	11.0366
UGAUGGCCUUGCGGGGCAGGGCCUGCUGCAAGAGGUC	chr20:32255385-32255655(-)$1	270	120	157	11.8465
GGACCUGGUGUGUGGCAGCUCAGCCUCACUCCCGGUA	chr9:139701033-139701323(-)$1	290	161	198	14.3117
AUGGCCGAUGUGCGCCGGUGGGUUGGCGUGGGCGCGG	chr19:1467818-1468084(-)$1	266	186	223	12.6719
gAGGGCAGGCCUGGGCCGGAUGAGGCCCUGCUGCCGA	chr13:28713103-28713375(+)$1	272	157	194	12.6803
ccgccgggACAUGGUGCCAGUCGCACCCCUUCCCCGC	chr9:139702477-139702751(+)$1	274	84	121	11.5566
CUAUCUAGGGGCUGCUGGGAAGAUGGCGGACUCGGUG	chr7:150777704-150777985(-)$1	281	87	124	12.9293
ccgcggcgguucccggagcucgucccggacgcgcgcc	chr9:80646047-80646345(-)$1	298	41	78	15.0236
ggagccggcagcggcggcggGCCCGGCGCGGAGCCGG	chr1:27022945-27023198(+)$1	253	207	244	15.1339
UUGUGGGGGAAGGAGGAUGAGAGUCUUCUGGAUGAGG	chr16:29998086-29998350(+)$1	264	120	157	11.4634
GUGUCUCUGGUGGGGGUUGGGGCAGCUCCCGCCGGUU	chr20:62518759-62519034(+)$1	275	235	272	12.5344
GGGAAGCAGUUUGAGGGGAAUGUCUGAGAGGCGCUGC	chr3:185826159-185826408(-)$1	249	92	129	13.5106
GCCCAGCCUGCCGGCCCACUUCGGCCCGCUCCCUGGG	chr12:124873017-124873332(-)$1	315	3	40	11.5201
GAUCUGGGGGCGGGUCAAACGCUGGCCCCGCCCCUCU	chr16:67997747-67997993(-)$1	246	201	238	12.4284
UGAUGCUGGGGCUGCGGUUCAUCCGUCGUCUCAUUCA	chr19:1474682-1474941(-)$1	259	42	79	11.5586
GAAGUUUGGAGGGGCCGCCAUCUUGGUCCCAGCUCUC	chr2:172016826-172017094(-)$1	268	178	215	13.0624
AUCACCCGUGGCCAUGGGGUAGUCAAUGUUGGAGUCG	chr11:63884821-63885122(-)$1	301	81	118	13.6542
CCAGGCGGGGAGGGGGCGAGAGGCCCCAGGCCCGAGG	chr14:23451335-23451616(-)$1	281	102	139	12.2321
ugcugcugcugcugcCCUGUGAggccgaggccgcggc	chr20:3451893-3452150(+)$1	257	78	115	15.8462
GGGGUUUCCUGGCAGGCAUUGCGUGGUGCAUGGGCGC	chr2:219264947-219265181(+)$1	234	194	231	12.9386
GGGCAGUCACGUGGUGGUCACUCCUGGAUGUGCUGUC	chr19:2425964-2426258(-)$1	294	155	192	10.8441
cgUGACGGUGCCCACGCCGCCGCAGGUACCGGGCGCC	chr20:62371182-62371517(+)$1	335	184	221	11.0559
AAGGGUGAGAGUUAGGCCCCUUUCUCCUCUGGACGCC	chr3:142443399-142443644(+)$1	245	170	207	12.7439
caggccgggaccgagccgggagggccaggggcugguc	chr16:87426116-87426425(+)$1	309	130	167	15.3390
GGUCGGGGUCGGGGCCGGUGGGGGCCCCGCCCCCGUC	chr3:142443302-142443599(+)$1	297	34	71	13.7422
CCAGGGCCCUGCGUGUGACGGUGCAGCAGCGGCUCUG	chr16:2029107-2029382(+)$1	275	19	56	13.8493
CUUCCCCUGGUCCUGCCCCUCUGGCGGUGGGGGUGGG	chr17:76201421-76201657(+)$1	236	4	41	12.0927
CGCUGCGCGCGCCACAGAACCUCUUCCUGGUGUCGCU	chr4:3768416-3768676(+)$1	260	158	195	11.8263
GGCCGAGACUUCGGGCCCCAGCGGUCCGUGCACGGUC	chr7:5460710-5460980(-)$1	270	109	146	13.0459
UGCCUCCGUACCCAUUGGAGGGCAAAGGGGUUAGGGG	chr6:32936910-32937156(+)$1	246	125	162	12.1819
UCUGCCGGCCUCGGGCUUCUGCGGCCCGAUGUGGCAG	chr3:98451573-98451827(+)$1	254	106	143	15.2310
CUGCCUAUCGGGCGGGGGGGGGCCUCCCGCCCGACUG	chr14:103576655-103576927(+)$1	272	135	172	11.8649
ccauccucuuccucGCCGAACGAGGUGAUGGCGCUGA	chr3:142443444-142443679(+)$1	235	23	60	11.9916
GGGACUGGGAGCGGCUGAGGCAGGCGCCGCAGCACGC	chr10:91404103-91404458(-)$1	355	158	195	12.5327
GGACUGUGACCUGGGGAGGUGCCCCCACCAUCAGAAG	chr19:59081744-59082004(+)$1	260	140	177	13.1338
GGGUCGGGGUCGGGGCCGGUGGGGGCCCCGCCCCCGU	chr3:142443246-142443502(+)$1	256	89	126	14.0191

#DB
(((((((...(..((((....))))..)..)))))))	chr5:179248446-179248795(+)$1	1	165	202	11.4878
(((((((((((((((((((...)))).))))))))).	chr19:42401278-42401569(+)$1	1	123	160	12.1878
(..(((((..(((..((....))...))).))))).)	chr5:173043246-173043507(-)$1	1	93	130	11.3323
(((.((((((.(.(.(.(....).).).).)))))).	chr18:19321473-19321727(+)$1	1	153	190	11.0383
(((((((((.(((((((.........))))))).)))	chr8:145687739-145688007(-)$1	1	62	99	11.8191
))((((.((.(((.(((......))).))).)).)))	chr16:75298068-75298374(-)$1	1	245	282	12.6220
(((((.((((.((((((......)))))).)))).))	chr6:31864774-31865112(-)$1	1	71	108	12.8862
(((....((.(((((((.....))))))).)).....	chr17:46986027-46986347(-)$1	1	112	149	10.7611
(..((((((((((.(((.....)))..))))))))).	chr10:31609023-31609265(+)$1	1	29	66	15.0898
((((((((..((.(((......))).))...))))))	chr10:103603174-103603437(-)$1	1	208	245	15.4035
(((((((((((((.(((....)))..)))).))))))	chr2:231902498-231902754(+)$1	1	61	98	10.8334
((((((((..(((((((.....)))))))...)))))	chr20:3451843-3452093(+)$1	1	37	74	15.6419
.((((((.((..(.(((......)))))).)))))).	chr19:49002197-49002498(-)$1	1	210	247	13.2688
(((..(((((.((((((......)))))).)))))..	chr7:127670344-127670597(+)$1	1	13	50	12.5861
((((((((.((((.(((.....))).)))))))))).	chr9:99212475-99212709(+)$1	1	143	180	11.9412
(((((.(.((((((.((.....)).))))))).))))	chr1:27023787-27024050(+)$1	1	197	234	11.4254
(((((.((..(((((.(....).))))))).))))))	chr9:33817607-33817864(+)$1	1	82	119	10.6468
(...(((..(((.(((..(...)..))))))...)))	chr17:74533295-74533599(-)$1	1	4	41	12.5019
((.(((.((.(((((((...))))))))).))).)))	chr19:58991523-58991791(-)$1	1	105	142	11.0366
)))(((((((..(.(((((...))))).)..))))))	chr20:32255385-32255655(-)$1	1	120	157	11.8465
(.(((.((.(((.(((......))).))).)).))).	chr9:139701033-139701323(-)$1	1	161	198	14.3117
.((((((.(((((((((......))))))..))))))	chr19:1467818-1468084(-)$1	1	186	223	12.6719
(..(((((....(((((......)))))..)))))..	chr13:28713103-28713375(+)$1	1	157	194	12.6803
(.((.((((...(((((.....)))))...)))).))	chr9:139702477-139702751(+)$1	1	84	121	11.5566
(((.(((.(((((((((......)))))).)))..))	chr7:150777704-150777985(-)$1	1	87	124	12.9293
..((((((..(((.(((.....))).)))))).))).	chr9:80646047-80646345(-)$1	1	41	78	15.0236
((..(((((.(((.(((.....))).)))...)))))	chr1:27022945-27023198(+)$1	1	207	244	15.1339
((.(.(.....(((((((....)))))))...).).)	chr16:29998086-29998350(+)$1	1	120	157	11.4634
)(((..(((((((((((((...)))))))))))))..	chr20:62518759-62519034(+)$1	1	235	272	12.5344
((...((..(((.(((......))).))).)).))))	chr3:185826159-185826408(-)$1	1	92	129	13.5106
..((((...((.((((......)))).))...)))))	chr12:124873017-124873332(-)$1	1	3	40	11.5201
..)))((((((((((((.....))).)))))))))))	chr16:67997747-67997993(-)$1	1	201	238	12.4284
(((...((((((.((((.....)))).)))))).)))	chr19:1474682-1474941(-)$1	1	42	79	11.5586
((((((....(((((((......))))))))))).))	chr2:172016826-172017094(-)$1	1	178	215	13.0624
.((.((((...((((((.....)))....)))...))	chr11:63884821-63885122(-)$1	1	81	118	13.6542
((...((((...(((((.....)))))...))))..)	chr14:23451335-23451616(-)$1	1	102	139	12.2321
(((((((((.((((((......)))...))).)))))	chr20:3451893-3452150(+)$1	1	78	115	15.8462
(((((.(((..(((.((.....))..)))..))).))	chr2:219264947-219265181(+)$1	1	194	231	12.9386
((((((.(((((...((.....))...))))))))))	chr19:2425964-2426258(-)$1	1	155	192	10.8441
((...((((((((..(((......)))...)))))))	chr20:62371182-62371517(+)$1	1	184	221	11.0559
(.(((((((((..(((......))).))))...))))	chr3:142443399-142443644(+)$1	1	170	207	12.7439
((((((((..((..(((.....)))..))..))))))	chr16:87426116-87426425(+)$1	1	130	167	15.3390
((.(((((.(((((((......))))))).)))))))	chr3:142443302-142443599(+)$1	1	34	71	13.7422
((((((((((((.(((......))))))).)))))))	chr16:2029107-2029382(+)$1	1	19	56	13.8493
...((((((...(((((.....))))))))))).)))	chr17:76201421-76201657(+)$1	1	4	41	12.0927
.((((((.((((((.(((...)))...))))))))).	chr4:3768416-3768676(+)$1	1	158	195	11.8263
(((((.(....((((((.....))))))..).)))))	chr7:5460710-5460980(-)$1	1	109	146	13.0459
(((((((..((((.(((.....)))..))))..))))	chr6:32936910-32937156(+)$1	1	125	162	12.1819
(((((((.(.(((((((.....))))))).)))))))	chr3:98451573-98451827(+)$1	1	106	143	15.2310
)).))).((((((((((((...))))))))))))(((	chr14:103576655-103576927(+)$1	1	135	172	11.8649
.(((((((..(((((((......))))).))....).	chr3:142443444-142443679(+)$1	1	23	60	11.9916
.(..(((.(.(((.(((...))).)))).)))..)))	chr10:91404103-91404458(-)$1	1	158	195	12.5327
(((((.(((..(((((......)))))...)))..))	chr19:59081744-59082004(+)$1	1	140	177	13.1338
(((.(((((.(((((((......))))))).))))).	chr3:142443246-142443502(+)$1	1	89	126	14.0191

#PSSM
e : 0.16	g : 0.12	c : 0.12	f : 0.09	= : 0.07	i : 0.07	[ : 0.07	d : 0.05	! : 0.05	b : 0.03	" : 0.03	a : 0.01	C : 0.01	h : 0.01	n : 0.01	
e : 0.16	f : 0.16	g : 0.12	c : 0.11	! : 0.09	= : 0.07	i : 0.05	[ : 0.05	d : 0.03	" : 0.03	h : 0.01	n : 0.01	b : 0.01	a : 0.01	
e : 0.12	f : 0.12	c : 0.12	g : 0.11	! : 0.09	" : 0.09	= : 0.07	i : 0.05	d : 0.05	[ : 0.05	b : 0.03	] : 0.01	a : 0.01	
e : 0.14	f : 0.12	c : 0.12	g : 0.11	" : 0.09	= : 0.07	[ : 0.07	i : 0.05	d : 0.05	! : 0.05	a : 0.03	# : 0.01	b : 0.01	
e : 0.18	c : 0.16	f : 0.14	g : 0.11	= : 0.07	i : 0.07	d : 0.07	" : 0.07	! : 0.03	[ : 0.03	# : 0.01	
f : 0.14	e : 0.12	[ : 0.12	c : 0.12	d : 0.11	g : 0.09	i : 0.09	= : 0.05	# : 0.01	a : 0.01	! : 0.01	b : 0.01	" : 0.01	h : 0.01	
f : 0.14	e : 0.12	c : 0.12	i : 0.11	g : 0.09	d : 0.07	[ : 0.05	b : 0.05	= : 0.05	# : 0.03	a : 0.03	$ : 0.01	" : 0.01	h : 0.01	: : 0.01	
e : 0.12	[ : 0.12	i : 0.11	b : 0.09	d : 0.09	f : 0.07	= : 0.07	g : 0.05	! : 0.05	c : 0.05	" : 0.03	# : 0.03	$ : 0.01	h : 0.01	a : 0.01	
! : 0.18	f : 0.09	d : 0.09	i : 0.07	b : 0.07	e : 0.07	c : 0.07	" : 0.05	[ : 0.05	# : 0.05	= : 0.05	g : 0.03	a : 0.03	$ : 0.01	h : 0.01	
! : 0.16	[ : 0.16	d : 0.11	" : 0.09	c : 0.09	f : 0.07	i : 0.05	# : 0.05	b : 0.03	e : 0.03	g : 0.03	= : 0.03	$ : 0.01	h : 0.01	
c : 0.20	g : 0.14	d : 0.09	b : 0.07	! : 0.07	" : 0.07	i : 0.05	[ : 0.05	f : 0.05	e : 0.03	# : 0.03	= : 0.03	a : 0.01	$ : 0.01	h : 0.01	
c : 0.20	g : 0.16	f : 0.14	! : 0.07	d : 0.07	i : 0.05	b : 0.05	e : 0.05	" : 0.05	= : 0.03	a : 0.01	# : 0.01	[ : 0.01	h : 0.01	
g : 0.16	c : 0.14	[ : 0.12	f : 0.12	e : 0.12	d : 0.07	! : 0.05	i : 0.05	a : 0.03	= : 0.03	" : 0.01	h : 0.01	
[ : 0.18	g : 0.16	c : 0.16	f : 0.12	e : 0.12	d : 0.05	! : 0.05	i : 0.03	= : 0.03	a : 0.01	" : 0.01	
c : 0.35	g : 0.16	e : 0.14	f : 0.09	[ : 0.07	d : 0.05	! : 0.03	= : 0.03	i : 0.01	" : 0.01	
c : 0.38	g : 0.16	e : 0.12	f : 0.09	d : 0.07	b : 0.07	= : 0.03	a : 0.01	[ : 0.01	
c : 0.25	o : 0.16	g : 0.14	e : 0.11	f : 0.09	b : 0.07	d : 0.05	= : 0.03	[ : 0.01	a : 0.01	! : 0.01	
o : 0.35	n : 0.35	m : 0.07	l : 0.03	= : 0.03	c : 0.03	d : 0.01	a : 0.01	r : 0.01	! : 0.01	e : 0.01	g : 0.01	
o : 0.37	n : 0.35	m : 0.11	l : 0.05	= : 0.03	d : 0.01	r : 0.01	a : 0.01	e : 0.01	
o : 0.37	n : 0.35	l : 0.14	m : 0.11	r : 0.01	
o : 0.37	n : 0.35	m : 0.11	l : 0.11	r : 0.01	g : 0.01	c : 0.01	
o : 0.37	n : 0.35	l : 0.09	c : 0.05	m : 0.03	d : 0.01	b : 0.01	r : 0.01	a : 0.01	g : 0.01	
c : 0.31	o : 0.20	g : 0.11	e : 0.09	d : 0.07	b : 0.07	a : 0.03	= : 0.03	r : 0.01	] : 0.01	f : 0.01	
c : 0.33	g : 0.14	e : 0.14	f : 0.09	d : 0.07	b : 0.05	] : 0.03	= : 0.03	3 : 0.01	r : 0.01	2 : 0.01	o : 0.01	
c : 0.33	g : 0.14	e : 0.14	f : 0.09	d : 0.07	3 : 0.05	2 : 0.05	= : 0.03	a : 0.01	r : 0.01	] : 0.01	
] : 0.16	g : 0.14	e : 0.14	2 : 0.11	f : 0.11	c : 0.09	d : 0.07	3 : 0.07	= : 0.03	r : 0.01	4 : 0.01	
c : 0.16	g : 0.16	e : 0.14	f : 0.11	2 : 0.07	] : 0.07	d : 0.07	3 : 0.05	a : 0.03	= : 0.03	b : 0.01	i : 0.01	4 : 0.01	
f : 0.16	c : 0.14	g : 0.14	b : 0.09	d : 0.09	3 : 0.09	e : 0.07	i : 0.05	a : 0.03	] : 0.03	= : 0.03	4 : 0.01	
c : 0.16	g : 0.14	f : 0.14	3 : 0.09	d : 0.09	b : 0.09	2 : 0.05	i : 0.05	a : 0.03	= : 0.03	] : 0.03	4 : 0.01	e : 0.01	
] : 0.24	3 : 0.16	2 : 0.12	c : 0.11	d : 0.07	f : 0.07	i : 0.05	g : 0.05	b : 0.03	= : 0.03	e : 0.01	
c : 0.14	f : 0.12	3 : 0.11	e : 0.09	d : 0.09	i : 0.07	] : 0.07	b : 0.07	2 : 0.07	g : 0.03	= : 0.03	a : 0.03	h : 0.01	
c : 0.14	g : 0.11	e : 0.11	f : 0.11	3 : 0.11	i : 0.09	b : 0.07	d : 0.07	= : 0.05	] : 0.03	a : 0.01	h : 0.01	2 : 0.01	4 : 0.01	
g : 0.12	e : 0.12	f : 0.12	i : 0.09	d : 0.09	c : 0.09	] : 0.07	= : 0.07	3 : 0.05	2 : 0.03	b : 0.01	0 : 0.01	a : 0.01	h : 0.01	4 : 0.01	
e : 0.16	g : 0.11	] : 0.11	i : 0.09	f : 0.09	d : 0.09	c : 0.09	= : 0.07	2 : 0.05	3 : 0.03	h : 0.03	0 : 0.01	4 : 0.01	
e : 0.16	g : 0.11	i : 0.11	f : 0.11	d : 0.09	c : 0.09	] : 0.07	2 : 0.05	= : 0.05	a : 0.03	h : 0.03	0 : 0.01	3 : 0.01	4 : 0.01	
e : 0.14	c : 0.12	g : 0.11	f : 0.11	d : 0.11	i : 0.09	= : 0.07	2 : 0.07	] : 0.03	h : 0.03	0 : 0.01	b : 0.01	G : 0.01	a : 0.01	
e : 0.14	g : 0.11	] : 0.11	d : 0.09	2 : 0.09	c : 0.09	i : 0.07	= : 0.07	f : 0.07	h : 0.03	4 : 0.01	3 : 0.01	0 : 0.01	b : 0.01	G : 0.01	

#score	686.9096795063147
#seq	54
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_UTR_m2_run2.txt

#BEAR
dddoooooodddd	chr6:170892649-170892910(-)$1	261	236	249	9.6647
cccooooooccc:	chr11:2152577-2152782(-)$1	205	91	104	11.7714
c[aooooooa]cc	chr17:4618800-4619045(+)$1	245	125	138	10.6278
cccooooooccc2	chr14:21484914-21485174(-)$1	260	110	123	11.8315
cccooooooccc2	chr14:32546485-32546788(+)$1	303	168	181	11.8315
cccooooooccc:	chr11:2152669-2152876(-)$1	207	87	100	11.7714
cccooooooccc:	chr11:2152651-2152857(-)$1	206	68	81	11.7714
dddoooooodddd	chr3:48457752-48458036(-)$1	284	254	267	9.6647
cccooooooccci	chr11:2152480-2152682(-)$1	202	33	46	11.7795
gggoooooogggg	chr11:85374299-85374564(-)$1	265	43	56	9.7201
cccooooooccc:	chr11:2152648-2152851(-)$1	203	62	75	11.7714
cccooooooccc:	chr11:2152562-2152764(-)$1	202	73	86	11.7714
cccooooooccc:	chr11:2152509-2152730(-)$1	221	39	52	11.7714
cccoooooocccc	chr11:2153246-2153457(-)$1	211	107	120	11.9096
cccooooooccc:	chr11:2152492-2152702(-)$1	210	11	24	11.7714
cccooooooccc2	chr11:2153415-2153622(-)$1	207	8	21	11.8315
cccooooooccci	chr11:2152441-2152650(-)$1	209	1	14	11.7795
cccoooooocccc	chr11:2153232-2153441(-)$1	209	91	104	11.9096
cccoooooocccg	chr2:85770076-85770340(+)$1	264	42	55	11.7776
cccoooooocccB	chr3:15901022-15901274(-)$1	252	21	34	11.6641
cccooooooccci	chr11:2152477-2152680(-)$1	203	31	44	11.7795
cccooooooccc]	chr19:54024499-54024753(+)$1	254	109	122	12.0073
cccooooooccc:	chr17:62501970-62502230(-)$1	260	5	18	11.7714
ddaooooooa]dd	chr11:2152041-2152252(-)$1	211	21	34	9.8508
cccooooooccc:	chr11:2152605-2152812(-)$1	207	121	134	11.7714
c[aooooooa]cc	chr10:120967127-120967392(+)$1	265	202	215	10.6278
cccooooooccc:	chr11:2152657-2152861(-)$1	204	2	15	11.7714
cccoooooocccc	chr11:2153263-2153475(-)$1	212	125	138	11.9096
cccooooooccc:	chr11:2152741-2152948(-)$1	207	33	46	11.7714
cccooooooccc:	chr11:2152502-2152709(-)$1	207	18	31	11.7714
cccooooooccc]	chr3:49050980-49051207(+)$1	227	121	134	12.0073
cccooooooccc:	chr11:2152639-2152844(-)$1	205	55	68	11.7714
cccooooooccc:	chr11:2152698-2152903(-)$1	205	114	127	11.7714
cccoooooocccc	chr11:2153182-2153390(-)$1	208	40	53	11.9096
cccooooooccc:	chr11:2152713-2152917(-)$1	204	2	15	11.7714
cccooooooccc:	chr11:2152624-2152827(-)$1	203	38	51	11.7714
dddoooooodddd	chr11:2153407-2153615(-)$1	208	1	14	9.6647
cccooooooccc:	chr11:2152588-2152795(-)$1	207	6	19	11.7714
cccooooooccc:	chr11:2152851-2153064(-)$1	213	70	83	11.7714
dddoooooodddd	chr12:123997906-123998195(-)$1	289	41	54	9.6647
cccooooooccc:	chr11:2159577-2159786(-)$1	209	191	204	11.7714
dddoooooodddd	chr9:97848115-97848353(+)$1	238	100	113	9.6647
cccooooooccc:	chr11:2152709-2152913(-)$1	204	124	137	11.7714
ddaooooooa]dd	chr11:2152024-2152241(-)$1	217	10	23	9.8508
cccoooooocccc	chr11:2153217-2153431(-)$1	214	81	94	11.9096
cccooooooccc:	chr11:2152677-2152880(-)$1	203	91	104	11.7714
cccooooooccc:	chr11:72423483-72423761(-)$1	278	15	28	11.7714
cccooooooccc:	chr11:2152783-2152999(-)$1	216	84	97	11.7714
cccooooooccci	chr11:2152450-2152656(-)$1	206	7	20	11.7795
e[aooooooa]ee	chr1:28176899-28177192(+)$1	293	215	228	9.3676
cccooooooccc:	chr11:2152582-2152788(-)$1	206	97	110	11.7714
cccooooooccci	chr11:2152487-2152689(-)$1	202	40	53	11.7795
dddoooooodddd	chr17:7082310-7082558(-)$1	248	146	159	9.6647
cccoooooocccd	chr17:37076041-37076334(+)$1	293	0	13	11.7767
cccooooooccc2	chr11:2153487-2153693(-)$1	206	79	92	11.8315
cccooooooccc:	chr11:2152717-2152922(-)$1	205	7	20	11.7714
cccooooooccci	chr11:2152462-2152671(-)$1	209	22	35	11.7795
cccooooooccci	chr11:2152489-2152692(-)$1	203	43	56	11.7795
ggaooooooa]gg	chr8:144679233-144679494(-)$1	261	11	24	9.8422

#otherMatches

#Seq PSSM
UGCCACAAAGCAU	chr6:170892649-170892910(-)$1	261	236	249	9.6647
gcacccaccugca	chr11:2152577-2152782(-)$1	205	91	104	11.7714
GAGGacacacaca	chr17:4618800-4619045(+)$1	245	125	138	10.6278
GGCUGGGCUGCUU	chr14:21484914-21485174(-)$1	260	110	123	11.8315
GGACCCCGCUCCU	chr14:32546485-32546788(+)$1	303	168	181	11.8315
gcacacacaugca	chr11:2152669-2152876(-)$1	207	87	100	11.7714
gcacacacaugca	chr11:2152651-2152857(-)$1	206	68	81	11.7714
UGUCUCAGAACAC	chr3:48457752-48458036(-)$1	284	254	267	9.6647
CCACAAAAUUGGA	chr11:2152480-2152682(-)$1	202	33	46	11.7795
CUACUUUAAUGGG	chr11:85374299-85374564(-)$1	265	43	56	9.7201
gcacacacaugca	chr11:2152648-2152851(-)$1	203	62	75	11.7714
gcacccaccugca	chr11:2152562-2152764(-)$1	202	73	86	11.7714
gcacccaccugca	chr11:2152509-2152730(-)$1	221	39	52	11.7714
UGCAUCCCCGCAG	chr11:2153246-2153457(-)$1	211	107	120	11.9096
gcacccaccugca	chr11:2152492-2152702(-)$1	210	11	24	11.7714
GCACGUCGCUGCU	chr11:2153415-2153622(-)$1	207	8	21	11.8315
CCACAAAAUUGGA	chr11:2152441-2152650(-)$1	209	1	14	11.7795
UGCAUCCCCGCAG	chr11:2153232-2153441(-)$1	209	91	104	11.9096
GAAGAAGAAUUUC	chr2:85770076-85770340(+)$1	264	42	55	11.7776
UUCGGGAAGGGGG	chr3:15901022-15901274(-)$1	252	21	34	11.6641
CCACAAAAUUGGA	chr11:2152477-2152680(-)$1	203	31	44	11.7795
ugugugugAAUAA	chr19:54024499-54024753(+)$1	254	109	122	12.0073
UCGAGUGACCGAG	chr17:62501970-62502230(-)$1	260	5	18	11.7714
CACAUUGGAGAUG	chr11:2152041-2152252(-)$1	211	21	34	9.8508
gcacccaccugca	chr11:2152605-2152812(-)$1	207	121	134	11.7714
ggcagcagcggcg	chr10:120967127-120967392(+)$1	265	202	215	10.6278
gcacacacaugca	chr11:2152657-2152861(-)$1	204	2	15	11.7714
UGCAUCCCCGCAG	chr11:2153263-2153475(-)$1	212	125	138	11.9096
gcacacacaugca	chr11:2152741-2152948(-)$1	207	33	46	11.7714
gcacccaccugca	chr11:2152502-2152709(-)$1	207	18	31	11.7714
CCAUUACCCUGGG	chr3:49050980-49051207(+)$1	227	121	134	12.0073
gcacacacaugca	chr11:2152639-2152844(-)$1	205	55	68	11.7714
gcacacacaugca	chr11:2152698-2152903(-)$1	205	114	127	11.7714
UGCAUCCCCGCAG	chr11:2153182-2153390(-)$1	208	40	53	11.9096
gcacacacaugca	chr11:2152713-2152917(-)$1	204	2	15	11.7714
gcacacacaugca	chr11:2152624-2152827(-)$1	203	38	51	11.7714
GCACGUCGCUGCU	chr11:2153407-2153615(-)$1	208	1	14	9.6647
gcacacacaugca	chr11:2152588-2152795(-)$1	207	6	19	11.7714
gcacacacaugca	chr11:2152851-2153064(-)$1	213	70	83	11.7714
UCACAUCGAUGAA	chr12:123997906-123998195(-)$1	289	41	54	9.6647
UGCCCCGUCGCAC	chr11:2159577-2159786(-)$1	209	191	204	11.7714
GGCCUUCGCGUCU	chr9:97848115-97848353(+)$1	238	100	113	9.6647
gcacacacaugca	chr11:2152709-2152913(-)$1	204	124	137	11.7714
CACAUUGGAGAUG	chr11:2152024-2152241(-)$1	217	10	23	9.8508
UGCAUCCCCGCAG	chr11:2153217-2153431(-)$1	214	81	94	11.9096
gcacacacaugca	chr11:2152677-2152880(-)$1	203	91	104	11.7714
UGUGAGGAAACAG	chr11:72423483-72423761(-)$1	278	15	28	11.7714
gcacacacaugca	chr11:2152783-2152999(-)$1	216	84	97	11.7714
CCACAAAAUUGGA	chr11:2152450-2152656(-)$1	206	7	20	11.7795
GGUUGAAAUAGCC	chr1:28176899-28177192(+)$1	293	215	228	9.3676
gcacccaccugca	chr11:2152582-2152788(-)$1	206	97	110	11.7714
CCACAAAAUUGGA	chr11:2152487-2152689(-)$1	202	40	53	11.7795
GAGGAUGGAUUCU	chr17:7082310-7082558(-)$1	248	146	159	9.6647
GUCAGCAGGGACC	chr17:37076041-37076334(+)$1	293	0	13	11.7767
GCACGUCGCUGCU	chr11:2153487-2153693(-)$1	206	79	92	11.8315
gcacacacaugca	chr11:2152717-2152922(-)$1	205	7	20	11.7714
CCACAAAAUUGGA	chr11:2152462-2152671(-)$1	209	22	35	11.7795
CCACAAAAUUGGA	chr11:2152489-2152692(-)$1	203	43	56	11.7795
CGCGACAGAGACG	chr8:144679233-144679494(-)$1	261	11	24	9.8422

#DB
(((......))))	chr6:170892649-170892910(-)$1	1	236	249	9.6647
(((......))).	chr11:2152577-2152782(-)$1	1	91	104	11.7714
(.(......).))	chr17:4618800-4619045(+)$1	1	125	138	10.6278
(((......))).	chr14:21484914-21485174(-)$1	1	110	123	11.8315
(((......))).	chr14:32546485-32546788(+)$1	1	168	181	11.8315
(((......))).	chr11:2152669-2152876(-)$1	1	87	100	11.7714
(((......))).	chr11:2152651-2152857(-)$1	1	68	81	11.7714
(((......))))	chr3:48457752-48458036(-)$1	1	254	267	9.6647
(((......)))(	chr11:2152480-2152682(-)$1	1	33	46	11.7795
(((......))))	chr11:85374299-85374564(-)$1	1	43	56	9.7201
(((......))).	chr11:2152648-2152851(-)$1	1	62	75	11.7714
(((......))).	chr11:2152562-2152764(-)$1	1	73	86	11.7714
(((......))).	chr11:2152509-2152730(-)$1	1	39	52	11.7714
(((......)))(	chr11:2153246-2153457(-)$1	1	107	120	11.9096
(((......))).	chr11:2152492-2152702(-)$1	1	11	24	11.7714
(((......))).	chr11:2153415-2153622(-)$1	1	8	21	11.8315
(((......)))(	chr11:2152441-2152650(-)$1	1	1	14	11.7795
(((......)))(	chr11:2153232-2153441(-)$1	1	91	104	11.9096
(((......))))	chr2:85770076-85770340(+)$1	1	42	55	11.7776
(((......)))(	chr3:15901022-15901274(-)$1	1	21	34	11.6641
(((......)))(	chr11:2152477-2152680(-)$1	1	31	44	11.7795
(((......))).	chr19:54024499-54024753(+)$1	1	109	122	12.0073
(((......))).	chr17:62501970-62502230(-)$1	1	5	18	11.7714
(((......).))	chr11:2152041-2152252(-)$1	1	21	34	9.8508
(((......))).	chr11:2152605-2152812(-)$1	1	121	134	11.7714
(.(......).))	chr10:120967127-120967392(+)$1	1	202	215	10.6278
(((......))).	chr11:2152657-2152861(-)$1	1	2	15	11.7714
(((......)))(	chr11:2153263-2153475(-)$1	1	125	138	11.9096
(((......))).	chr11:2152741-2152948(-)$1	1	33	46	11.7714
(((......))).	chr11:2152502-2152709(-)$1	1	18	31	11.7714
(((......))).	chr3:49050980-49051207(+)$1	1	121	134	12.0073
(((......))).	chr11:2152639-2152844(-)$1	1	55	68	11.7714
(((......))).	chr11:2152698-2152903(-)$1	1	114	127	11.7714
(((......)))(	chr11:2153182-2153390(-)$1	1	40	53	11.9096
(((......))).	chr11:2152713-2152917(-)$1	1	2	15	11.7714
(((......))).	chr11:2152624-2152827(-)$1	1	38	51	11.7714
(((......))))	chr11:2153407-2153615(-)$1	1	1	14	9.6647
(((......))).	chr11:2152588-2152795(-)$1	1	6	19	11.7714
(((......))).	chr11:2152851-2153064(-)$1	1	70	83	11.7714
(((......))))	chr12:123997906-123998195(-)$1	1	41	54	9.6647
(((......))).	chr11:2159577-2159786(-)$1	1	191	204	11.7714
(((......))))	chr9:97848115-97848353(+)$1	1	100	113	9.6647
(((......))).	chr11:2152709-2152913(-)$1	1	124	137	11.7714
(((......).))	chr11:2152024-2152241(-)$1	1	10	23	9.8508
(((......)))(	chr11:2153217-2153431(-)$1	1	81	94	11.9096
(((......))).	chr11:2152677-2152880(-)$1	1	91	104	11.7714
(((......))).	chr11:72423483-72423761(-)$1	1	15	28	11.7714
(((......))).	chr11:2152783-2152999(-)$1	1	84	97	11.7714
(((......)))(	chr11:2152450-2152656(-)$1	1	7	20	11.7795
(.(......).))	chr1:28176899-28177192(+)$1	1	215	228	9.3676
(((......))).	chr11:2152582-2152788(-)$1	1	97	110	11.7714
(((......)))(	chr11:2152487-2152689(-)$1	1	40	53	11.7795
(((......))))	chr17:7082310-7082558(-)$1	1	146	159	9.6647
(((......)))(	chr17:37076041-37076334(+)$1	1	0	13	11.7767
(((......))).	chr11:2153487-2153693(-)$1	1	79	92	11.8315
(((......))).	chr11:2152717-2152922(-)$1	1	7	20	11.7714
(((......)))(	chr11:2152462-2152671(-)$1	1	22	35	11.7795
(((......)))(	chr11:2152489-2152692(-)$1	1	43	56	11.7795
(((......).))	chr8:144679233-144679494(-)$1	1	11	24	9.8422

#PSSM
c : 0.81	d : 0.13	g : 0.03	e : 0.01	
c : 0.77	d : 0.13	[ : 0.05	g : 0.03	
c : 0.77	d : 0.10	a : 0.10	g : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.77	d : 0.10	a : 0.10	g : 0.01	
c : 0.77	d : 0.10	] : 0.10	g : 0.01	
c : 0.81	d : 0.13	g : 0.03	e : 0.01	
: : 0.42	d : 0.15	c : 0.11	i : 0.11	2 : 0.06	g : 0.05	] : 0.03	B : 0.01	e : 0.01	

#score	670.7265275937722
#seq	59
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_CDS_m2_run1.txt

#BEAR
:ggggggg"""ccclllccc333gggggg	chr8:48855677-48855989(-)$1	312	21	50	11.5463
"""dddd[cccrrrrrrrrrccc]dddd3	chr2:62096528-62096788(-)$1	260	204	233	11.8431
ccc!!gggggggqqqqqqqqggggggg33	chr11:5289615-5289922(-)$1	307	79	108	11.6382
##===========nnnnn===========	chr11:18425230-18425459(+)$1	229	117	146	15.2816
cciiiiiiiiissssssssssiiiiiiii	chr11:18426901-18427223(+)$1	322	140	169	13.1637
ff===========nnnnn===========	chr11:18425140-18425430(+)$1	290	207	236	14.5782
b!!eeeee####aooooooa4444eeeee	chr2:27884874-27885155(-)$1	281	214	243	12.1691
ddddiiiiiiiiipppppppiiiiiiiii	chr6:43746525-43746756(+)$1	231	184	213	12.7505

#otherMatches

#Seq PSSM
UAUGUCGUCUGAUUUUAAAUAUAAUGGCA	chr8:48855677-48855989(-)$1	312	21	50	11.5463
AGAUGAUGUGGUAAGUGUUUCCAGGUUGC	chr2:62096528-62096788(-)$1	260	204	233	11.8431
GUCUUUUGCCUAACAGCUCCUGGGUAACG	chr11:5289615-5289922(-)$1	307	79	108	11.6382
GUGGUUGAGAGGUAAUAAAUCUUUCAAUU	chr11:18425230-18425459(+)$1	229	117	146	15.2816
GGACUCUCUGUAGCAGAUUUGGCAGAGAG	chr11:18426901-18427223(+)$1	322	140	169	13.1637
GUGGUUGAGAGGUAAUAAAUCUUUCAAUU	chr11:18425140-18425430(+)$1	290	207	236	14.5782
uaagucuagcagcaguguagagaauagau	chr2:27884874-27885155(-)$1	281	214	243	12.1691
UGGGGCUCUUGGCUACCUCUGUUGGGGGC	chr6:43746525-43746756(+)$1	231	184	213	12.7505

#DB
.(((((((...(((...)))...))))))	chr8:48855677-48855989(-)$1	1	21	50	11.5463
...((((.(((.........))).)))).	chr2:62096528-62096788(-)$1	1	204	233	11.8431
(((..(((((((........)))))))..	chr11:5289615-5289922(-)$1	1	79	108	11.6382
..(((((((((((.....)))))))))))	chr11:18425230-18425459(+)$1	1	117	146	15.2816
))(((((((((..........))))))))	chr11:18426901-18427223(+)$1	1	140	169	13.1637
))(((((((((((.....)))))))))))	chr11:18425140-18425430(+)$1	1	207	236	14.5782
(..(((((....(......)....)))))	chr2:27884874-27885155(-)$1	1	214	243	12.1691
(((((((((((((.......)))))))))	chr6:43746525-43746756(+)$1	1	184	213	12.7505

#PSSM
c : 0.25	: : 0.12	" : 0.12	# : 0.12	f : 0.12	b : 0.12	d : 0.12	
c : 0.25	g : 0.12	" : 0.12	# : 0.12	f : 0.12	! : 0.12	d : 0.12	
= : 0.25	g : 0.12	" : 0.12	c : 0.12	i : 0.12	! : 0.12	d : 0.12	
d : 0.25	= : 0.25	g : 0.12	! : 0.12	i : 0.12	e : 0.12	
= : 0.25	i : 0.25	g : 0.12	d : 0.12	! : 0.12	e : 0.12	
g : 0.25	= : 0.25	i : 0.25	d : 0.12	e : 0.12	
g : 0.25	= : 0.25	i : 0.25	d : 0.12	e : 0.12	
g : 0.25	= : 0.25	i : 0.25	[ : 0.12	e : 0.12	
= : 0.25	i : 0.25	" : 0.12	c : 0.12	g : 0.12	# : 0.12	
= : 0.25	i : 0.25	" : 0.12	c : 0.12	g : 0.12	# : 0.12	
= : 0.25	i : 0.25	" : 0.12	c : 0.12	g : 0.12	# : 0.12	
= : 0.25	c : 0.12	r : 0.12	g : 0.12	s : 0.12	# : 0.12	i : 0.12	
= : 0.25	c : 0.12	r : 0.12	q : 0.12	s : 0.12	a : 0.12	i : 0.12	
n : 0.25	c : 0.12	r : 0.12	q : 0.12	s : 0.12	o : 0.12	p : 0.12	
n : 0.25	l : 0.12	r : 0.12	q : 0.12	s : 0.12	o : 0.12	p : 0.12	
n : 0.25	l : 0.12	r : 0.12	q : 0.12	s : 0.12	o : 0.12	p : 0.12	
n : 0.25	l : 0.12	r : 0.12	q : 0.12	s : 0.12	o : 0.12	p : 0.12	
n : 0.25	c : 0.12	r : 0.12	q : 0.12	s : 0.12	o : 0.12	p : 0.12	
= : 0.25	c : 0.12	r : 0.12	q : 0.12	s : 0.12	o : 0.12	p : 0.12	
= : 0.25	c : 0.12	r : 0.12	q : 0.12	s : 0.12	a : 0.12	p : 0.12	
= : 0.25	3 : 0.12	c : 0.12	g : 0.12	s : 0.12	4 : 0.12	i : 0.12	
= : 0.25	i : 0.25	3 : 0.12	c : 0.12	g : 0.12	4 : 0.12	
= : 0.25	i : 0.25	3 : 0.12	c : 0.12	g : 0.12	4 : 0.12	
g : 0.25	= : 0.25	i : 0.25	] : 0.12	4 : 0.12	
g : 0.25	= : 0.25	i : 0.25	d : 0.12	e : 0.12	
g : 0.25	= : 0.25	i : 0.25	d : 0.12	e : 0.12	
g : 0.25	= : 0.25	i : 0.25	d : 0.12	e : 0.12	
= : 0.25	i : 0.25	g : 0.12	d : 0.12	3 : 0.12	e : 0.12	
3 : 0.25	= : 0.25	i : 0.25	g : 0.12	e : 0.12	

#score	102.97114770423752
#seq	8
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF469SRC_SAFB_CDS_m2_run2.txt

#BEAR
[ccc!!bb[ddddvvvvvvvvvvvvvddddbb]ccc]bb	chr10:88259703-88260066(-)$1	363	97	136	31.5954
eeee"""fffffftttttttttttffffff22eeeee:e	chr1:78098338-78098678(-)$1	340	4	43	34.2114
eeee!!bb!!bbuuuuuuuuuuuubb22bb22eeeee33	chr21:38538203-38538458(+)$1	255	61	100	36.5746

#otherMatches

#Seq PSSM
GUGGGACCAGUUUUAGAGGGACAGUUGGACGGACUAGAG	chr10:88259703-88260066(-)$1	363	97	136	31.5954
UCUUAGAUCUGAAGCACCAAACAGUUCAGAAGAAGAUUC	chr1:78098338-78098678(-)$1	340	4	43	34.2114
AAGAUGUGAAGGCCAAACCAGUAUCCGACAAUUCUUCUA	chr21:38538203-38538458(+)$1	255	61	100	36.5746

#DB
.(((..((.((((.............)))))).))).))	chr10:88259703-88260066(-)$1	1	97	136	31.5954
((((...((((((...........))))))..))))).(	chr1:78098338-78098678(-)$1	1	4	43	34.2114
((((..((..((............))..))..)))))..	chr21:38538203-38538458(+)$1	1	61	100	36.5746

#PSSM
e : 0.66	[ : 0.33	
e : 0.66	c : 0.33	
e : 0.66	c : 0.33	
e : 0.66	c : 0.33	
! : 0.66	" : 0.33	
! : 0.66	" : 0.33	
b : 0.66	" : 0.33	
b : 0.66	f : 0.33	
[ : 0.33	f : 0.33	! : 0.33	
d : 0.33	f : 0.33	! : 0.33	
d : 0.33	f : 0.33	b : 0.33	
d : 0.33	f : 0.33	b : 0.33	
d : 0.33	f : 0.33	u : 0.33	
v : 0.33	t : 0.33	u : 0.33	
v : 0.33	t : 0.33	u : 0.33	
v : 0.33	t : 0.33	u : 0.33	
v : 0.33	t : 0.33	u : 0.33	
v : 0.33	t : 0.33	u : 0.33	
v : 0.33	t : 0.33	u : 0.33	
v : 0.33	t : 0.33	u : 0.33	
v : 0.33	t : 0.33	u : 0.33	
v : 0.33	t : 0.33	u : 0.33	
v : 0.33	t : 0.33	u : 0.33	
v : 0.33	t : 0.33	u : 0.33	
v : 0.33	f : 0.33	b : 0.33	
v : 0.33	f : 0.33	b : 0.33	
d : 0.33	f : 0.33	2 : 0.33	
d : 0.33	f : 0.33	2 : 0.33	
d : 0.33	f : 0.33	b : 0.33	
d : 0.33	f : 0.33	b : 0.33	
2 : 0.66	b : 0.33	
2 : 0.66	b : 0.33	
e : 0.66	] : 0.33	
e : 0.66	c : 0.33	
e : 0.66	c : 0.33	
e : 0.66	c : 0.33	
e : 0.66	] : 0.33	
b : 0.33	: : 0.33	3 : 0.33	
b : 0.33	e : 0.33	3 : 0.33	

#score	102.38149210366659
#seq	3
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_CDS_m1_run1.txt

#BEAR
eeee"""bbyyyyyyyyyyyyyyyybb3	chr3:99568465-99568757(+)$1	292	47	75	23.2740
gggg!!ccc^^^^^^^^^^^^^^^^^^c	chr14:63861885-63862163(-)$1	278	237	265	29.6885
ddd"""ddddxxxxxxxxxxxxxxxddd	chr8:101717130-101717370(-)$1	240	86	114	20.1937
ccc!!bb[bb^^^^^^^^^^^^^^^^^^	chr22:18276456-18276725(-)$1	269	87	115	29.4454
ddd!!bb[avvvvvvvvvvvvva]bb22	chr19:42401903-42402191(+)$1	288	125	153	17.8788
ccc!!accc^^^^^^^^^^^^^^^^^^^	chr6:33179897-33180183(+)$1	286	134	162	31.5251
^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:68324077-68324405(+)$1	328	24	52	32.9561
^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:47230815-47231086(-)$1	271	228	256	32.9561
ccc^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:49838590-49838911(+)$1	321	240	268	33.3924
::::::ccc^^^^^^^^^^^^^^^^^^^	chr3:99569355-99569605(+)$1	250	59	87	25.8657
iiii^^^^^^^^^^^^^^^^^^^^^^^^	chrX:140994886-140995168(+)$1	282	114	142	32.5397
::::::ccc^^^^^^^^^^^^^^^^^^c	chr19:42839817-42840204(+)$1	387	158	186	24.7693
ccc^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:15696285-15696557(-)$1	272	33	61	33.3924
ggggg[ccc^^^^^^^^^^^^^^^^^^^	chrX:140994816-140995070(+)$1	254	38	66	30.1272
=========^^^^^^^^^^^^^^^^^^^	chr2:101622709-101622971(+)$1	262	80	108	30.1742
mcccbb[bbyyyyyyyyyyyyyyyybb]	chr2:70129426-70129721(+)$1	295	174	202	21.5896
ddd####eeeeewwwwwwwwwwwwwwee	chr2:179396809-179397115(+)$1	306	58	86	19.2321
ddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:57742855-57743216(+)$1	361	172	200	33.0659
ggggg[ccc^^^^^^^^^^^^^^^^^^^	chr11:85671684-85671975(-)$1	291	51	79	30.1272
ddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:48700362-48700680(-)$1	318	177	205	33.0659
#bb####bbyyyyyyyyyyyyyyyybb4	chr9:111848180-111848508(-)$1	328	187	215	24.0653
####bb[ddddzzzzzzzzzzzzzzzzz	chr11:57573786-57574037(+)$1	251	176	204	20.7531
ddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:14274089-14274388(-)$1	299	55	83	33.0659
iiiiiiiii^^^^^^^^^^^^^^^^^^^	chr19:45912065-45912318(-)$1	253	84	112	29.4560
ddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:99197909-99198154(+)$1	245	53	81	33.0659
c####a!!bb^^^^^^^^^^^^^^^^^^	chr6:30673623-30673868(-)$1	245	33	61	30.3043
f$$$$$ccc^^^^^^^^^^^^^^^^^^^	chr17:7369630-7369951(-)$1	321	173	201	30.7204
ccc!!ccc^^^^^^^^^^^^^^^^^^^^	chr19:42401837-42402103(+)$1	266	107	135	31.7289
ggg!!ccc^^^^^^^^^^^^^^^^^^^^	chr12:57115115-57115364(-)$1	249	53	81	31.4458
ccceeeee^^^^^^^^^^^^^^^^^^^^	chr5:112227540-112227837(-)$1	297	76	104	30.0914
fff^^^^^^^^^^^^^^^^^^^^^^^^^	chr13:39586882-39587252(-)$1	370	60	88	32.7773
fff^^^^^^^^^^^^^^^^^^^^^^^^^	chr13:39587099-39587393(-)$1	294	201	229	32.7773
44ffffffddddyyyyyyyyyyyyyyyy	chrX:140994984-140995239(+)$1	255	103	131	19.9864
[bb^^^^^^^^^^^^^^^^^^^^^^^^^	chr13:39587731-39588028(-)$1	297	81	109	32.7978
ccc####bb^^^^^^^^^^^^^^^^^^^	chr1:180042817-180043116(+)$1	299	20	48	31.8201
eee^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:35447777-35448042(-)$1	265	111	139	32.8311
ccc[ffffff[bbxxxxxxxxxxxxxxx	chr20:30155749-30155997(+)$1	248	135	163	18.8319
ff####cccvvvvvvvvvvvvvccc]ff	chr19:45911951-45912223(-)$1	272	114	142	17.8189
ddd####bbzzzzzzzzzzzzzzzzzbb	chr6:33286459-33286761(-)$1	302	234	262	22.6432
ccceeeee^^^^^^^^^^^^^^^^^^^^	chr1:202543964-202544231(+)$1	267	132	160	30.0914
++++++ccc^^^^^^^^^^^^^^^^^^c	chr1:44442819-44443062(+)$1	243	185	213	27.7278
::eeeee^^^^^^^^^^^^^^^^^^^^^	chr12:57113955-57114182(-)$1	227	66	94	28.6896
ddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr13:25008728-25008988(-)$1	260	80	108	33.0659
ggg^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:183516081-183516355(+)$1	274	228	256	33.1093

#otherMatches

#Seq PSSM
UUUGUCUCGUUCAUUAGCAUACCUUCGU	chr3:99568465-99568757(+)$1	292	47	75	23.2740
AAUUGCUAAUCUCAGAUGAAUAUUAUUU	chr14:63861885-63862163(-)$1	278	237	265	29.6885
GUGAACGGCUGUUUCCUCUUAUUCAAGC	chr8:101717130-101717370(-)$1	240	86	114	20.1937
aaauuccugcuccucuccuccucuuccu	chr22:18276456-18276725(-)$1	269	87	115	29.4454
gucuuggucucuCCUUGUCUCUGUCCCC	chr19:42401903-42402191(+)$1	288	125	153	17.8788
uuccucucucuuuuccccucucucccuu	chr6:33179897-33180183(+)$1	286	134	162	31.5251
UAAAUUAUGuuuuuuuuucuuuccccug	chr16:68324077-68324405(+)$1	328	24	52	32.9561
cccucucugccccucccucCCCUCCCCC	chr19:47230815-47231086(-)$1	271	228	256	32.9561
AAGUACUUCCUCUUCGUUUUCAACCUCU	chr19:49838590-49838911(+)$1	321	240	268	33.3924
UGAUACCAGCGUUUCCAUAUUCUCCCUU	chr3:99569355-99569605(+)$1	250	59	87	25.8657
ACUCCAUGUCUCCUCUCUACUUUCCUCA	chrX:140994886-140995168(+)$1	282	114	142	32.5397
uaucucGCCUUCUCUCCAUGUUucucug	chr19:42839817-42840204(+)$1	387	158	186	24.7693
GAAUAUAUCCCUCCUCCUUuucuuucuc	chr16:15696285-15696557(-)$1	272	33	61	33.3924
GGAGGACUCCCUAUCUCCUCACUACUUU	chrX:140994816-140995070(+)$1	254	38	66	30.1272
UUGACUGUUACUUCCUUUACAGAUCUAC	chr2:101622709-101622971(+)$1	262	80	108	30.1742
ugcugcugcuguuucuguuuccucugcu	chr2:70129426-70129721(+)$1	295	174	202	21.5896
GCAUGUUUUGAGAUUUCGUAUUCUUCCU	chr2:179396809-179397115(+)$1	306	58	86	19.2321
cuguucuccucuccucucuuucucuccc	chr19:57742855-57743216(+)$1	361	172	200	33.0659
UGACAAAACCAAAACCACUUCUUCUUUC	chr11:85671684-85671975(-)$1	291	51	79	30.1272
guacuuucucccuuuccccucuccccGC	chr19:48700362-48700680(-)$1	318	177	205	33.0659
ACCUUACCCCCUAUCCUCAAGCUCUGGC	chr9:111848180-111848508(-)$1	328	187	215	24.0653
UUUUAAGGUGCUUAUCUACUUCUAAUUU	chr11:57573786-57574037(+)$1	251	176	204	20.7531
UGACCAACUUGccucucuccccccucuc	chr19:14274089-14274388(-)$1	299	55	83	33.0659
CUGUCCCUUUUCUUUUUUCCUCUUCUUC	chr19:45912065-45912318(-)$1	253	84	112	29.4560
GUGucuucuuuuuuucuuuauuuucuuu	chr2:99197909-99198154(+)$1	245	53	81	33.0659
UACCUGAAGCCCCAGCCCCACCCCAAAA	chr6:30673623-30673868(-)$1	245	33	61	30.3043
GCCUCUCCCCCUGCUUCUUCCCCACCCC	chr17:7369630-7369951(-)$1	321	173	201	30.7204
gcccuggccucuccccaccucugucccu	chr19:42401837-42402103(+)$1	266	107	135	31.7289
GGGCUGCAUAACUCACCUUUUUUCUCCU	chr12:57115115-57115364(-)$1	249	53	81	31.4458
UGCACAGCUUCCucuuuuucuuucuucu	chr5:112227540-112227837(-)$1	297	76	104	30.0914
GCCACCUCCACAUCUCUCCCUCAUCCUA	chr13:39586882-39587252(-)$1	370	60	88	32.7773
GCCACCUCCACAUCUCUCCCUCAUCCUA	chr13:39587099-39587393(-)$1	294	201	229	32.7773
CCUCCUCCACUCCAUCCAGUCUUCCCCA	chrX:140994984-140995239(+)$1	255	103	131	19.9864
CCAAUUUAAUCAACUCCUCUGCUUUAUC	chr13:39587731-39588028(-)$1	297	81	109	32.7978
UCACUCAGCUCUUACGCUUUCCCUUUCU	chr1:180042817-180043116(+)$1	299	20	48	31.8201
uguucuuuuucucuuucuuucucucucu	chr6:35447777-35448042(-)$1	265	111	139	32.8311
GAGUCCUCGGCGGAAAUCCUGCCUCAUA	chr20:30155749-30155997(+)$1	248	135	163	18.8319
CCUUUUGCCUCUUUCUCUUUUUGGUCGG	chr19:45911951-45912223(-)$1	272	114	142	17.8189
CUGAUUAGCUGCCUCCCCUUCUCCCUGC	chr6:33286459-33286761(-)$1	302	234	262	22.6432
CUGUCUGUCCUUUUCAUGUCUCAAUCUC	chr1:202543964-202544231(+)$1	267	132	160	30.0914
GCUUCCACCUCCUCAUUUCCAUCUUCUG	chr1:44442819-44443062(+)$1	243	185	213	27.7278
AAUGUAGCUACCUCUUUUUCAUUAUCUC	chr12:57113955-57114182(-)$1	227	66	94	28.6896
UGCUUCCUCUCCUUUUCAUUUUCAACCU	chr13:25008728-25008988(-)$1	260	80	108	33.0659
CUGAUUUUUUCUAACCCUCCUGAUCUUU	chr1:183516081-183516355(+)$1	274	228	256	33.1093

#DB
((((...((................)).	chr3:99568465-99568757(+)$1	1	47	75	23.2740
((((..(((..................)	chr14:63861885-63862163(-)$1	1	237	265	29.6885
(((...((((...............)))	chr8:101717130-101717370(-)$1	1	86	114	20.1937
(((..((.((..................	chr22:18276456-18276725(-)$1	1	87	115	29.4454
(((..((.(.............).))..	chr19:42401903-42402191(+)$1	1	125	153	17.8788
(((..((((...................	chr6:33179897-33180183(+)$1	1	134	162	31.5251
............................	chr16:68324077-68324405(+)$1	1	24	52	32.9561
............................	chr19:47230815-47231086(-)$1	1	228	256	32.9561
(((.........................	chr19:49838590-49838911(+)$1	1	240	268	33.3924
......(((...................	chr3:99569355-99569605(+)$1	1	59	87	25.8657
((((........................	chrX:140994886-140995168(+)$1	1	114	142	32.5397
......(((..................)	chr19:42839817-42840204(+)$1	1	158	186	24.7693
(((.........................	chr16:15696285-15696557(-)$1	1	33	61	33.3924
(((((.(((...................	chrX:140994816-140995070(+)$1	1	38	66	30.1272
(((((((((...................	chr2:101622709-101622971(+)$1	1	80	108	30.1742
.)))((.((................)).	chr2:70129426-70129721(+)$1	1	174	202	21.5896
(((....(((((..............))	chr2:179396809-179397115(+)$1	1	58	86	19.2321
(((.........................	chr19:57742855-57743216(+)$1	1	172	200	33.0659
(((((.(((...................	chr11:85671684-85671975(-)$1	1	51	79	30.1272
(((.........................	chr19:48700362-48700680(-)$1	1	177	205	33.0659
.((....((................)).	chr9:111848180-111848508(-)$1	1	187	215	24.0653
....((.((((.................	chr11:57573786-57574037(+)$1	1	176	204	20.7531
(((.........................	chr19:14274089-14274388(-)$1	1	55	83	33.0659
(((((((((...................	chr19:45912065-45912318(-)$1	1	84	112	29.4560
(((.........................	chr2:99197909-99198154(+)$1	1	53	81	33.0659
(....(..((..................	chr6:30673623-30673868(-)$1	1	33	61	30.3043
(.....(((...................	chr17:7369630-7369951(-)$1	1	173	201	30.7204
(((..(((....................	chr19:42401837-42402103(+)$1	1	107	135	31.7289
(((..(((....................	chr12:57115115-57115364(-)$1	1	53	81	31.4458
)))(((((....................	chr5:112227540-112227837(-)$1	1	76	104	30.0914
(((.........................	chr13:39586882-39587252(-)$1	1	60	88	32.7773
(((.........................	chr13:39587099-39587393(-)$1	1	201	229	32.7773
..))))))((((................	chrX:140994984-140995239(+)$1	1	103	131	19.9864
.((.........................	chr13:39587731-39588028(-)$1	1	81	109	32.7978
(((....((...................	chr1:180042817-180043116(+)$1	1	20	48	31.8201
(((.........................	chr6:35447777-35448042(-)$1	1	111	139	32.8311
(((.((((((.((...............	chr20:30155749-30155997(+)$1	1	135	163	18.8319
((....(((.............))).))	chr19:45911951-45912223(-)$1	1	114	142	17.8189
(((....((.................))	chr6:33286459-33286761(-)$1	1	234	262	22.6432
((((((((....................	chr1:202543964-202544231(+)$1	1	132	160	30.0914
......(((..................)	chr1:44442819-44443062(+)$1	1	185	213	27.7278
..(((((.....................	chr12:57113955-57114182(-)$1	1	66	94	28.6896
(((.........................	chr13:25008728-25008988(-)$1	1	80	108	33.0659
(((.........................	chr1:183516081-183516355(+)$1	1	228	256	33.1093

#PSSM
c : 0.22	d : 0.20	g : 0.11	f : 0.09	: : 0.06	e : 0.04	^ : 0.04	i : 0.04	# : 0.04	= : 0.02	m : 0.02	4 : 0.02	[ : 0.02	+ : 0.02	
c : 0.22	d : 0.20	g : 0.11	: : 0.06	f : 0.06	e : 0.04	^ : 0.04	i : 0.04	b : 0.04	# : 0.04	= : 0.02	$ : 0.02	4 : 0.02	+ : 0.02	
c : 0.22	d : 0.20	g : 0.11	e : 0.06	# : 0.06	f : 0.06	^ : 0.04	: : 0.04	i : 0.04	b : 0.04	= : 0.02	$ : 0.02	+ : 0.02	
^ : 0.31	# : 0.15	! : 0.11	e : 0.09	g : 0.06	: : 0.04	i : 0.04	" : 0.02	= : 0.02	c : 0.02	$ : 0.02	f : 0.02	[ : 0.02	+ : 0.02	
^ : 0.34	! : 0.13	# : 0.13	e : 0.06	" : 0.04	: : 0.04	g : 0.04	b : 0.04	f : 0.04	= : 0.02	i : 0.02	$ : 0.02	+ : 0.02	
^ : 0.34	# : 0.11	b : 0.09	e : 0.06	" : 0.04	a : 0.04	: : 0.04	[ : 0.04	c : 0.04	f : 0.04	! : 0.02	= : 0.02	i : 0.02	$ : 0.02	+ : 0.02	
^ : 0.34	c : 0.25	# : 0.09	e : 0.06	b : 0.04	[ : 0.04	f : 0.04	" : 0.02	d : 0.02	= : 0.02	i : 0.02	! : 0.02	
^ : 0.36	c : 0.25	b : 0.11	e : 0.06	d : 0.04	[ : 0.04	f : 0.04	= : 0.02	i : 0.02	! : 0.02	
^ : 0.45	c : 0.20	b : 0.15	d : 0.06	a : 0.02	= : 0.02	e : 0.02	i : 0.02	f : 0.02	
^ : 0.70	y : 0.06	d : 0.06	b : 0.04	v : 0.04	e : 0.02	f : 0.02	z : 0.02	
^ : 0.74	y : 0.06	v : 0.04	d : 0.04	x : 0.02	e : 0.02	[ : 0.02	z : 0.02	
^ : 0.74	y : 0.06	v : 0.04	z : 0.04	x : 0.02	e : 0.02	d : 0.02	b : 0.02	
^ : 0.74	y : 0.09	v : 0.04	z : 0.04	x : 0.02	w : 0.02	b : 0.02	
^ : 0.74	y : 0.09	x : 0.04	v : 0.04	z : 0.04	w : 0.02	
^ : 0.74	y : 0.09	x : 0.04	v : 0.04	z : 0.04	w : 0.02	
^ : 0.74	y : 0.09	x : 0.04	v : 0.04	z : 0.04	w : 0.02	
^ : 0.74	y : 0.09	x : 0.04	v : 0.04	z : 0.04	w : 0.02	
^ : 0.74	y : 0.09	x : 0.04	v : 0.04	z : 0.04	w : 0.02	
^ : 0.74	y : 0.09	x : 0.04	v : 0.04	z : 0.04	w : 0.02	
^ : 0.74	y : 0.09	x : 0.04	v : 0.04	z : 0.04	w : 0.02	
^ : 0.74	y : 0.09	x : 0.04	v : 0.04	z : 0.04	w : 0.02	
^ : 0.74	y : 0.09	x : 0.04	v : 0.04	z : 0.04	w : 0.02	
^ : 0.74	y : 0.09	x : 0.04	z : 0.04	a : 0.02	w : 0.02	c : 0.02	
^ : 0.74	y : 0.09	x : 0.04	z : 0.04	] : 0.02	w : 0.02	c : 0.02	
^ : 0.74	y : 0.09	x : 0.04	z : 0.04	b : 0.02	w : 0.02	c : 0.02	
^ : 0.74	b : 0.09	z : 0.04	d : 0.02	w : 0.02	y : 0.02	x : 0.02	] : 0.02	
^ : 0.74	b : 0.09	d : 0.02	2 : 0.02	e : 0.02	z : 0.02	y : 0.02	x : 0.02	f : 0.02	
^ : 0.68	c : 0.06	3 : 0.02	d : 0.02	2 : 0.02	] : 0.02	e : 0.02	4 : 0.02	z : 0.02	y : 0.02	x : 0.02	f : 0.02	b : 0.02	

#score	1254.9261365524899
#seq	44
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_UTR_m3_run1.txt

#BEAR
bbb[ccc[azzzzzzzzzzzzzzzzza]ccc]bb]bb	chr8:101964436-101964710(-)$1	274	68	105	8.5653
66cccbb===========]a333ccc22bb]dddd22	chr11:289386-289687(+)$1	301	110	147	8.9238
!eeeee"""dddd[ccc[bbmmmmbb]cccdddd]ee	chr19:1104347-1104709(+)$1	362	146	183	9.6143
:ccc$$$$$dddd[eeeeeooooooeeeee]ddddcc	chr2:183902916-183903198(-)$1	282	238	275	8.3975
2eeeeegggggggccc==========ccc[ccc[ccc	chrX:106893689-106893973(+)$1	284	91	128	7.2732
eeeee####dddda[ddddmmmmdddd22a]dddd44	chr19:1104619-1104865(+)$1	246	198	235	9.7831
eeeee####dddd[eeeeennnnneeeee]dddd333	chr21:46644414-46644675(+)$1	261	119	156	9.6062
ffffdddd"""gggggggnnnnnggggggg]dddd]f	chr2:20550311-20550596(-)$1	285	185	222	8.4627
ffff[a[a[a[bbxxxxxxxxxxxxxxxbb]a]a]a]	chr12:54679569-54679839(+)$1	270	50	87	10.8971
!ccc^^^^^^^^^^^^^^^^^^^ccc22ccc:ddddp	chr17:22022377-22022617(+)$1	240	94	131	9.7436
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]ccc	chr5:79946748-79946968(-)$1	220	143	180	10.6957
ggggg[eeeee"""cccooooooccc]eeeeeggggg	chr5:145666606-145666854(+)$1	248	133	170	9.1166
[dddd####ccc!!bb[bbnnnnnbb]bb22ccc777	chr3:185542677-185542941(-)$1	264	127	164	8.9997
:eeeee!!a!!bbssssssssssbb4444a22eeeee	chr6:86352753-86352998(-)$1	245	13	50	8.4605
ddd[ccc!!ddddccc"""a[a"""gggggggwwwww	chr6:117996612-117996872(+)$1	260	11	48	8.3899
eeeee[eeeee!!ccc[ccclllccc]ccc]eeeee]	chr14:70238226-70238465(+)$1	239	64	101	9.8105
eee!!ccc[dddd[bb[bbmmmmbb]bb]ddddccc2	chr5:43290989-43291295(-)$1	306	198	235	8.0416
!dddd[ffffff!!bb^^^^^^^^^^^^^^^^^^^^^	chr15:74701947-74702202(-)$1	255	110	147	9.5609
[dddd[a"""ddddbbccclllccc333bb]dddd33	chr7:77166720-77166992(+)$1	272	143	180	12.7446
=======[cccvvvvvvvvvvvvvccc]=========	chr2:97525560-97525833(-)$1	273	209	246	10.9209
d"""dddd!!gggggggooooooggggggg]dddd22	chr15:79165208-79165491(+)$1	283	177	214	10.8536
ddddbb####ffffffmmmmffffff22bb]dddd]h	chr2:28974727-28975030(+)$1	303	65	102	7.5763
ccdddd"""bb!!ddddwwwwwwwwwwwwwwdddd22	chr10:74035233-74035520(+)$1	287	91	128	10.2305
dddddddccc!!eeeee[bblllbbeeeee22ccc22	chr12:125398772-125399029(-)$1	257	122	159	8.3962
ccc[bb$$$$$fffffflllffffff22bb]ccc22c	chrX:152954872-152955106(+)$1	234	186	223	8.0087
b!!dddd$$$$$ffffffmmmmffffff333dddd22	chr6:86352570-86352817(-)$1	247	125	162	8.6027
a!!dddd!!dddd[cccqqqqqqqqccc]dddd4444	chr5:126172483-126172764(+)$1	281	174	211	8.2249
a]ccc]a]============]adddd22bb]ccc]cc	chr9:139560093-139560362(+)$1	269	212	249	7.8428
=======[cccvvvvvvvvvvvvvccc]=========	chr2:97525500-97525760(-)$1	260	136	173	10.9209
''dddd!!cccggggggglllggggggg4444ccc22	chr12:12874168-12874423(+)$1	255	52	89	8.5153
bdddd[ccc[bb[bb[bboooooobb]bb]bb]ccc]	chr2:95825188-95825446(-)$1	258	82	119	8.3323
eeeee$$$$$ccc[cccooooooccc]ccc22eeeee	chr2:97535457-97535860(-)$1	403	134	171	11.2621
:eeeee"""ccc^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:31404292-31404599(-)$1	307	243	280	11.4169
DDDcccccc[==========lll==========ccc]	chr12:109124510-109124804(-)$1	294	25	62	8.0592
d[eeeee[dddd[a[a[bb[annnnna]bb]a]a]dd	chr4:2935990-2936301(-)$1	311	206	243	7.5115
eeeee$$$$$eeeeellleeeeeeeeee333dddd22	chr19:16187710-16187985(+)$1	275	199	236	7.4371
dd[adddd[dddd[bb[bbnnnnnbb]bb]ddddddd	chr3:160282986-160283337(-)$1	351	229	266	7.9239
eeeee####a[ffffffooooooffffff]aeeeee]	chr19:2270212-2270478(+)$1	266	223	260	10.0935
ggggggg"""bb!!a!!ammmma22a22bb22ggggg	chr19:14529791-14530095(-)$1	304	52	89	9.9513
bb[eeeee!!ccc[ccc[bblllbb]ccc]ccceeee	chr16:67596187-67596451(-)$1	264	177	214	8.9388
FFccc[bb!!ccc####ccclllccc333ccc]bb]c	chr8:25315656-25315901(-)$1	245	206	243	9.6865
####ccc[bb^^^^^^^^^^^^^^^^^^bb]ccc333	chr20:57467335-57467628(+)$1	293	51	88	12.6434
dd[a[a[cccvvvvvvvvvvvvvccc22a]adddda2	chr19:56185510-56185789(+)$1	279	152	189	11.0519
""ccc"""iiiiiiiiinnnnniiiiiiiii22ccc3	chr16:30535380-30535645(-)$1	265	23	60	8.7873
eeeeee####ccc[bbbb!!ccc[a[a[ccc[bb[cc	chr3:101292956-101293225(+)$1	269	131	168	7.5721
b[a[bb[a[eeeee!!a[ammmma]a22eeeee]a]b	chr9:139743349-139743616(+)$1	267	20	57	8.2721
$$$$ddddbb[cccssssssssssccc]bb]dddd22	chr12:7052903-7053145(+)$1	242	147	184	8.5408
ccc[eeeee!!a!!bb!!bbmmmmbb22bb22a]eee	chr22:50013866-50014179(-)$1	313	153	190	8.5493
####ccc[bb^^^^^^^^^^^^^^^^^^bb]ccc333	chr20:57467262-57467497(+)$1	235	124	161	12.6434

#otherMatches

#Seq PSSM
GCUGCAGGGGAGAGGGAGAGAGAGGGCGUUGGGGACC	chr8:101964436-101964710(-)$1	274	68	105	8.5653
CCGGGGUUGUGGGGGGUGCGUUUGGAAAGCAGGGUUA	chr11:289386-289687(+)$1	301	110	147	8.9238
ACCGUUGAGGGCCACGGCGGGGCGUCUCCGGGCCGAG	chr19:1104347-1104709(+)$1	362	146	183	9.6143
GGCCAUGGGCGCGCUCUCCUAAGGCGGAGGUCGCGGG	chr2:183902916-183903198(-)$1	282	238	275	8.3975
GGGGGUGGGGGGUGGUUGAGGGGGGAGGCAGCACAGU	chrX:106893689-106893973(+)$1	284	91	128	7.2732
CGGCGGAAGGCCCCAGCGUGCAGGCGCAGGAGGGCGC	chr19:1104619-1104865(+)$1	246	198	235	9.7831
UUCAGGGAGCCCUGGGCGGGGUGGCUGUCAGGGGGAA	chr21:46644414-46644675(+)$1	261	119	156	9.6062
CGUGUGCCCAACGGUCGGUGUCCCCGGCUGAGGCAGC	chr2:20550311-20550596(-)$1	285	185	222	8.4627
CCAUGGGUGUGUUGGAAGUUUGGGGAGGAGGAGGGUG	chr12:54679569-54679839(+)$1	270	50	87	10.8971
AACUAAAACAUUUACCCAAAUAAAGUAUAGGCGAUAG	chr17:22022377-22022617(+)$1	240	94	131	9.7436
AACCUUAACCAAACCAUUUACUCAAAUAAAGUAUAGG	chr5:79946748-79946968(-)$1	220	143	180	10.6957
AUGGGAGUCAUAUAUGACUUUGUUCAGAUGACCUUAU	chr5:145666606-145666854(+)$1	248	133	170	9.1166
agcggaggaggcgaggagcgccggguaccgggccggg	chr3:185542677-185542941(-)$1	264	127	164	8.9997
AGUgcgagcgagcgagggagggagugagggagcgugc	chr6:86352753-86352998(-)$1	245	13	50	8.4605
CUGUCCAUGUACUACUGGGGGCGGGGCUGCCAAGGGA	chr6:117996612-117996872(+)$1	260	11	48	8.3899
AUUUGGAAGGGGGGUUGGGUUGGGCUGGAUAUCUUUG	chr14:70238226-70238465(+)$1	239	64	101	9.8105
AGCCUGGAUGACUAUCGUGUACUUGGGAAAGUCUCUU	chr5:43290989-43291295(-)$1	306	198	235	8.0416
AGGGGGUGGGGUGAGGGAAACGGGAGAAUGAAGGAGA	chr15:74701947-74702202(-)$1	255	110	147	9.5609
AUGGAGCAAGUGGAGAUCCUGAGGAAAUUCAUCCAGA	chr7:77166720-77166992(+)$1	272	143	180	12.7446
GAGGGUGGGCCUGCUGUGGACAAUGGCAUACUCUCUU	chr2:97525560-97525833(-)$1	273	209	246	10.9209
UAAAUUCCAGGAGGGUGAGUGUGCGCCUUUGGGAAAA	chr15:79165208-79165491(+)$1	283	177	214	10.8536
GGGUGCCUCCGAGUGUGCGCGCGCUCUCGCUACCCGG	chr2:28974727-28975030(+)$1	303	65	102	7.5763
CUCCUCAGAGCAGCCGGAGGGAGGGGGGAGGUCGGAG	chr10:74035233-74035520(+)$1	287	91	128	10.2305
CAUGGUGGGCGGCAAGAACCCAAGGUCUUGAGGCCUU	chr12:125398772-125399029(-)$1	257	122	159	8.3962
GUUGCAGCCAAGCUCAGCCUCUGAGUAGUGGAGCGAG	chrX:152954872-152955106(+)$1	234	186	223	8.0087
GCACCGGGAGCGCGCUCGGAGGCGAGUGGAACUGGAU	chr6:86352570-86352817(-)$1	247	125	162	8.6027
CUUGCUUAAAUUUCUUAUGUGACAUUAACAAAUAAAA	chr5:126172483-126172764(+)$1	281	174	211	8.2249
guccggucgccgcccgggcugggucgagggcgggacc	chr9:139560093-139560362(+)$1	269	212	249	7.8428
GAGGGUGGGCCUGCUGUGGACAAUGGCAUACUCUCUU	chr2:97525500-97525760(-)$1	260	136	173	10.9209
AGUUUUUACCUUUUAUGUAGCACAUAAACUUUGGGGA	chr12:12874168-12874423(+)$1	255	52	89	8.5153
cgggcgggggcuggcgcgggguggcgggcggggCCUG	chr2:95825188-95825446(-)$1	258	82	119	8.3323
gccgcggagggcuggcgggcgagcgcgggcaggcggc	chr2:97535457-97535860(-)$1	403	134	171	11.2621
UCUGGGUUUGUGCUUUAUUUUAACCUCUCCCCCCACC	chr1:31404292-31404599(-)$1	307	243	280	11.4169
CCCGGGGGCUCCAGGCCUGGGGACUGGGUUUGGGCCG	chr12:109124510-109124804(-)$1	294	25	62	8.0592
CGAGUCCGGGCCAGGGGCCGGAAUCGCGGGGCGCggg	chr4:2935990-2936301(-)$1	311	206	243	7.5115
GGAUGAAAACGUGGAGCUUCCAUUGUCUAGGGUUUGA	chr19:16187710-16187985(+)$1	275	199	236	7.4371
gcggggcccgggcgggggAAGGAGUCACCGGCCCGGC	chr3:160282986-160283337(-)$1	351	229	266	7.9239
CGGUCUGGAUGGCCCGGGACGCGCCGGGCGAGGCCGC	chr19:2270212-2270478(+)$1	266	223	260	10.0935
GACGUCUGAACUGAGAGCGAGAGGACGAGGGGAGACG	chr19:14529791-14530095(-)$1	304	52	89	9.9513
CGAUGGCGUCACGGGACGCGCCGCGAGUCGCGUCGUC	chr16:67596187-67596451(-)$1	264	177	214	8.9388
gcgcggcgggccgggggucggggcgagggcggacggu	chr8:25315656-25315901(-)$1	245	206	243	9.6865
GAGAUUUGUUgggagagggaaagaggggaagaaaggg	chr20:57467335-57467628(+)$1	293	51	88	12.6434
ACACGCACCCACACAGACACAGAGGGAAGGGGUUGGG	chr19:56185510-56185789(+)$1	279	152	189	11.0519
AAUGGAGAGAGGUCAGCGGAGGGCUGGCCUCAGCCGC	chr16:30535380-30535645(-)$1	265	23	60	8.7873
AGCCUGAAAAGUCGCAGCGAGCUGGAGCCGCCGGAGG	chr3:101292956-101293225(+)$1	269	131	168	7.5721
CGGGCGGUGGAGGGGGUGGAGAGCGAGGCCUUCGGGC	chr9:139743349-139743616(+)$1	267	20	57	8.2721
UUUGUUGCCAAUGAUAGAUUGUUUUCACUGUGCAAAA	chr12:7052903-7053145(+)$1	242	147	184	8.5408
ggcucacuugggaggugacaagcuugggacagcaggg	chr22:50013866-50014179(-)$1	313	153	190	8.5493
GAGAUUUGUUgggagagggaaagaggggaagaaaggg	chr20:57467262-57467497(+)$1	235	124	161	12.6434

#DB
(((.(((.(.................).))).)).))	chr8:101964436-101964710(-)$1	1	68	105	8.5653
..)))))))))))))))).)...)))..)).))))..	chr11:289386-289687(+)$1	1	110	147	8.9238
.(((((...((((.(((.((....)).))))))).))	chr19:1104347-1104709(+)$1	1	146	183	9.6143
.(((.....((((.(((((......))))).))))))	chr2:183902916-183903198(-)$1	1	238	275	8.3975
.)))))(((((((((((((((((((((((.(((.(((	chrX:106893689-106893973(+)$1	1	91	128	7.2732
(((((....(((((.((((....))))..).))))..	chr19:1104619-1104865(+)$1	1	198	235	9.7831
(((((....((((.(((((.....))))).))))...	chr21:46644414-46644675(+)$1	1	119	156	9.6062
((((((((...(((((((.....))))))).)))).)	chr2:20550311-20550596(-)$1	1	185	222	8.4627
((((.(.(.(.((...............)).).).).	chr12:54679569-54679839(+)$1	1	50	87	10.8971
.(((...................)))..))).((((.	chr17:22022377-22022617(+)$1	1	94	131	9.7436
.............................)))).)))	chr5:79946748-79946968(-)$1	1	143	180	10.6957
(((((.(((((...(((......))).))))))))))	chr5:145666606-145666854(+)$1	1	133	170	9.1166
.((((....(((..((.((.....)).))..)))...	chr3:185542677-185542941(-)$1	1	127	164	8.9997
.(((((..(..((..........))....)..)))))	chr6:86352753-86352998(-)$1	1	13	50	8.4605
(((.(((..(((((((...(.(...(((((((.....	chr6:117996612-117996872(+)$1	1	11	48	8.3899
(((((.(((((..(((.(((...))).))).))))).	chr14:70238226-70238465(+)$1	1	64	101	9.8105
(((..(((.((((.((.((....)).)).))))))).	chr5:43290989-43291295(-)$1	1	198	235	8.0416
.((((.((((((..((.....................	chr15:74701947-74702202(-)$1	1	110	147	9.5609
.((((.(...(((((((((...)))...)).))))..	chr7:77166720-77166992(+)$1	1	143	180	12.7446
(((((((.(((.............))).)))))))))	chr2:97525560-97525833(-)$1	1	209	246	10.9209
(...((((..(((((((......))))))).))))..	chr15:79165208-79165491(+)$1	1	177	214	10.8536
((((((....((((((....))))))..)).)))).)	chr2:28974727-28975030(+)$1	1	65	102	7.5763
((((((...((..((((..............))))..	chr10:74035233-74035520(+)$1	1	91	128	10.2305
((((((((((..(((((.((...)))))))..)))..	chr12:125398772-125399029(-)$1	1	122	159	8.3962
(((.((.....((((((...))))))..)).)))..)	chrX:152954872-152955106(+)$1	1	186	223	8.0087
(..((((.....((((((....))))))...))))..	chr6:86352570-86352817(-)$1	1	125	162	8.6027
(..((((..((((.(((........))).))))....	chr5:126172483-126172764(+)$1	1	174	211	8.2249
).))).).)))))))))))).)))))..)).))).))	chr9:139560093-139560362(+)$1	1	212	249	7.8428
(((((((.(((.............))).)))))))))	chr2:97525500-97525760(-)$1	1	136	173	10.9209
..((((..((((((((((...)))))))....)))..	chr12:12874168-12874423(+)$1	1	52	89	8.5153
)((((.(((.((.((.((......)).)).)).))).	chr2:95825188-95825446(-)$1	1	82	119	8.3323
(((((.....(((.(((......))).)))..)))))	chr2:97535457-97535860(-)$1	1	134	171	11.2621
.(((((...(((.........................	chr1:31404292-31404599(-)$1	1	243	280	11.4169
(((((((((.((((((((((...))))))))))))).	chr12:109124510-109124804(-)$1	1	25	62	8.0592
(.(((((.((((.(.(.((.(.....).)).).).))	chr4:2935990-2936301(-)$1	1	206	243	7.5115
(((((.....(((((...))))))))))...))))..	chr19:16187710-16187985(+)$1	1	199	236	7.4371
((.(((((.((((.((.((.....)).)).)))))))	chr3:160282986-160283337(-)$1	1	229	266	7.9239
(((((....(.((((((......)))))).)))))).	chr19:2270212-2270478(+)$1	1	223	260	10.0935
(((((((...((..(..(....)..)..))..)))))	chr19:14529791-14530095(-)$1	1	52	89	9.9513
((.(((((..(((.(((.((...)).))).)))))))	chr16:67596187-67596451(-)$1	1	177	214	8.9388
))(((.((..(((....(((...)))...))).)).)	chr8:25315656-25315901(-)$1	1	206	243	9.6865
....(((.((..................)).)))...	chr20:57467335-57467628(+)$1	1	51	88	12.6434
((.(.(.(((.............)))..).)))))).	chr19:56185510-56185789(+)$1	1	152	189	11.0519
..(((...(((((((((.....)))))))))..))).	chr16:30535380-30535645(-)$1	1	23	60	8.7873
((((((....(((.((((..(((.(.(.(((.((.((	chr3:101292956-101293225(+)$1	1	131	168	7.5721
(.(.((.(.(((((..(.(....).)..))))).).)	chr9:139743349-139743616(+)$1	1	20	57	8.2721
....((((((.(((..........))).)).))))..	chr12:7052903-7053145(+)$1	1	147	184	8.5408
(((.(((((..(..((..((....))..))..).)))	chr22:50013866-50014179(-)$1	1	153	190	8.5493
....(((.((..................)).)))...	chr20:57467262-57467497(+)$1	1	124	161	12.6434

#PSSM
e : 0.16	d : 0.14	b : 0.10	! : 0.06	: : 0.06	c : 0.06	f : 0.04	g : 0.04	[ : 0.04	= : 0.04	a : 0.04	# : 0.04	6 : 0.02	2 : 0.02	^ : 0.02	' : 0.02	D : 0.02	F : 0.02	" : 0.02	$ : 0.02	
e : 0.24	d : 0.18	c : 0.10	b : 0.04	f : 0.04	g : 0.04	= : 0.04	" : 0.04	! : 0.04	[ : 0.04	# : 0.04	6 : 0.02	^ : 0.02	] : 0.02	' : 0.02	D : 0.02	F : 0.02	$ : 0.02	
e : 0.26	d : 0.18	c : 0.16	[ : 0.06	f : 0.04	g : 0.04	= : 0.04	! : 0.04	# : 0.04	b : 0.02	^ : 0.02	" : 0.02	D : 0.02	a : 0.02	$ : 0.02	
e : 0.26	d : 0.20	c : 0.14	[ : 0.10	f : 0.04	g : 0.04	= : 0.04	a : 0.04	# : 0.04	^ : 0.02	! : 0.02	" : 0.02	$ : 0.02	
e : 0.28	d : 0.26	c : 0.18	b : 0.06	[ : 0.04	^ : 0.04	g : 0.04	= : 0.04	$ : 0.02	! : 0.02	
d : 0.18	e : 0.16	c : 0.12	[ : 0.12	b : 0.08	# : 0.08	$ : 0.06	a : 0.04	^ : 0.04	= : 0.04	] : 0.02	g : 0.02	" : 0.02	
c : 0.14	d : 0.14	# : 0.12	e : 0.10	" : 0.08	$ : 0.08	[ : 0.06	b : 0.04	g : 0.04	^ : 0.04	! : 0.04	a : 0.04	= : 0.04	f : 0.02	
[ : 0.12	" : 0.12	# : 0.12	$ : 0.10	c : 0.10	d : 0.08	e : 0.08	! : 0.08	a : 0.04	^ : 0.04	= : 0.02	g : 0.02	f : 0.02	] : 0.02	b : 0.02	
c : 0.14	" : 0.12	# : 0.12	$ : 0.10	! : 0.10	[ : 0.08	e : 0.06	b : 0.06	a : 0.04	= : 0.04	^ : 0.04	g : 0.02	f : 0.02	d : 0.02	i : 0.02	
d : 0.18	c : 0.14	! : 0.10	b : 0.08	$ : 0.08	" : 0.06	e : 0.06	= : 0.04	a : 0.04	^ : 0.04	# : 0.04	[ : 0.04	z : 0.02	g : 0.02	f : 0.02	i : 0.02	
d : 0.20	c : 0.18	^ : 0.08	e : 0.08	= : 0.06	[ : 0.06	! : 0.06	b : 0.06	g : 0.04	f : 0.04	$ : 0.04	z : 0.02	" : 0.02	v : 0.02	i : 0.02	
d : 0.20	c : 0.14	g : 0.08	b : 0.08	^ : 0.08	f : 0.08	= : 0.06	! : 0.06	v : 0.06	e : 0.04	z : 0.02	" : 0.02	$ : 0.02	i : 0.02	a : 0.02	
d : 0.18	! : 0.12	^ : 0.10	c : 0.10	g : 0.08	f : 0.08	= : 0.06	v : 0.06	e : 0.06	b : 0.04	[ : 0.04	z : 0.02	" : 0.02	i : 0.02	
[ : 0.18	^ : 0.10	c : 0.08	! : 0.08	f : 0.08	= : 0.06	g : 0.06	v : 0.06	e : 0.06	a : 0.04	d : 0.04	z : 0.02	x : 0.02	" : 0.02	s : 0.02	b : 0.02	# : 0.02	i : 0.02	
c : 0.16	b : 0.16	^ : 0.10	e : 0.08	f : 0.08	= : 0.06	g : 0.06	v : 0.06	[ : 0.04	s : 0.04	z : 0.02	x : 0.02	d : 0.02	a : 0.02	# : 0.02	i : 0.02	! : 0.02	
c : 0.16	b : 0.14	^ : 0.10	f : 0.08	= : 0.06	e : 0.06	g : 0.06	v : 0.06	d : 0.04	s : 0.04	! : 0.04	z : 0.02	x : 0.02	[ : 0.02	a : 0.02	l : 0.02	# : 0.02	i : 0.02	
c : 0.12	^ : 0.12	[ : 0.10	= : 0.08	e : 0.06	g : 0.06	v : 0.06	f : 0.06	d : 0.04	s : 0.04	b : 0.04	! : 0.04	z : 0.02	x : 0.02	" : 0.02	m : 0.02	l : 0.02	# : 0.02	i : 0.02	a : 0.02	
^ : 0.12	b : 0.12	= : 0.08	[ : 0.08	o : 0.08	c : 0.06	v : 0.06	e : 0.04	g : 0.04	s : 0.04	l : 0.04	z : 0.02	d : 0.02	x : 0.02	" : 0.02	m : 0.02	w : 0.02	f : 0.02	q : 0.02	a : 0.02	n : 0.02	! : 0.02	
b : 0.16	^ : 0.12	o : 0.10	e : 0.06	= : 0.06	c : 0.06	v : 0.06	m : 0.06	n : 0.04	s : 0.04	l : 0.04	z : 0.02	] : 0.02	d : 0.02	x : 0.02	" : 0.02	w : 0.02	q : 0.02	! : 0.02	a : 0.02	
o : 0.12	m : 0.12	^ : 0.12	n : 0.10	b : 0.08	= : 0.06	l : 0.06	v : 0.06	a : 0.04	s : 0.04	c : 0.04	z : 0.02	x : 0.02	w : 0.02	q : 0.02	[ : 0.02	e : 0.02	! : 0.02	
m : 0.14	l : 0.14	o : 0.12	^ : 0.12	n : 0.10	v : 0.06	s : 0.04	f : 0.04	z : 0.02	3 : 0.02	= : 0.02	x : 0.02	[ : 0.02	w : 0.02	q : 0.02	] : 0.02	a : 0.02	e : 0.02	c : 0.02	
m : 0.14	o : 0.12	n : 0.12	^ : 0.12	l : 0.12	v : 0.06	s : 0.04	a : 0.04	f : 0.04	z : 0.02	3 : 0.02	= : 0.02	x : 0.02	w : 0.02	q : 0.02	g : 0.02	e : 0.02	c : 0.02	
o : 0.12	^ : 0.12	m : 0.10	n : 0.10	l : 0.10	v : 0.06	f : 0.06	s : 0.04	c : 0.04	z : 0.02	3 : 0.02	= : 0.02	x : 0.02	" : 0.02	w : 0.02	q : 0.02	d : 0.02	g : 0.02	e : 0.02	a : 0.02	i : 0.02	
c : 0.16	^ : 0.10	n : 0.08	b : 0.08	f : 0.08	g : 0.06	m : 0.04	o : 0.04	= : 0.04	d : 0.04	v : 0.04	z : 0.02	x : 0.02	" : 0.02	w : 0.02	q : 0.02	e : 0.02	2 : 0.02	i : 0.02	[ : 0.02	a : 0.02	s : 0.02	
c : 0.22	b : 0.18	^ : 0.10	f : 0.08	g : 0.06	= : 0.04	d : 0.04	e : 0.04	z : 0.02	o : 0.02	x : 0.02	" : 0.02	w : 0.02	q : 0.02	n : 0.02	2 : 0.02	i : 0.02	a : 0.02	] : 0.02	
c : 0.22	b : 0.10	^ : 0.10	e : 0.08	g : 0.08	f : 0.08	= : 0.04	d : 0.04	] : 0.04	a : 0.04	z : 0.02	x : 0.02	4 : 0.02	3 : 0.02	w : 0.02	n : 0.02	i : 0.02	[ : 0.02	
2 : 0.18	] : 0.14	c : 0.12	^ : 0.10	e : 0.08	g : 0.08	a : 0.06	3 : 0.04	f : 0.04	d : 0.02	x : 0.02	4 : 0.02	b : 0.02	w : 0.02	= : 0.02	i : 0.02	
2 : 0.20	c : 0.12	] : 0.10	e : 0.10	^ : 0.10	g : 0.08	b : 0.08	3 : 0.04	f : 0.04	x : 0.02	4 : 0.02	w : 0.02	= : 0.02	i : 0.02	[ : 0.02	
b : 0.30	c : 0.16	e : 0.10	g : 0.06	^ : 0.06	= : 0.06	3 : 0.06	4 : 0.04	] : 0.04	2 : 0.02	w : 0.02	f : 0.02	a : 0.02	i : 0.02	
b : 0.24	c : 0.14	] : 0.12	e : 0.08	g : 0.06	d : 0.06	= : 0.06	a : 0.04	^ : 0.04	3 : 0.04	[ : 0.02	2 : 0.02	w : 0.02	4 : 0.02	i : 0.02	
] : 0.30	c : 0.12	d : 0.12	2 : 0.12	= : 0.06	e : 0.04	^ : 0.04	3 : 0.04	a : 0.04	g : 0.02	w : 0.02	4 : 0.02	b : 0.02	i : 0.02	
d : 0.36	c : 0.16	2 : 0.12	e : 0.08	= : 0.06	a : 0.04	^ : 0.04	] : 0.02	: : 0.02	g : 0.02	4 : 0.02	b : 0.02	[ : 0.02	
d : 0.38	c : 0.18	e : 0.10	] : 0.08	= : 0.06	b : 0.04	g : 0.04	^ : 0.04	w : 0.02	2 : 0.02	a : 0.02	
d : 0.32	c : 0.22	e : 0.10	b : 0.06	] : 0.06	a : 0.04	g : 0.04	^ : 0.04	= : 0.04	[ : 0.02	w : 0.02	4 : 0.02	
d : 0.28	c : 0.16	e : 0.12	] : 0.10	3 : 0.06	g : 0.04	^ : 0.04	= : 0.04	7 : 0.02	w : 0.02	2 : 0.02	4 : 0.02	b : 0.02	[ : 0.02	a : 0.02	
2 : 0.18	c : 0.18	e : 0.14	3 : 0.08	] : 0.08	d : 0.06	4 : 0.04	a : 0.04	g : 0.04	^ : 0.04	= : 0.04	b : 0.02	7 : 0.02	w : 0.02	
2 : 0.20	c : 0.14	e : 0.10	3 : 0.10	] : 0.10	b : 0.04	4 : 0.04	g : 0.04	^ : 0.04	= : 0.04	d : 0.04	f : 0.02	p : 0.02	7 : 0.02	w : 0.02	h : 0.02	

#score	455.8555029393697
#seq	49
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_CDS_m1_run2.txt

#BEAR
$ccc[abb[ddddtttttttttttddddbb]a]ccc4444	chr8:48650435-48650652(-)$1	217	130	170	45.1107
=======[a[ccctttttttttttccca]===========	chr16:72821492-72821755(-)$1	263	12	52	36.0397
$ccc[abb[ddddtttttttttttddddbb]a]ccc4444	chr8:48650427-48650635(-)$1	208	113	153	45.1107

#otherMatches

#Seq PSSM
ACGACGAGAGCGCCAUCGACUUCAGCGCCUACAUCGACUC	chr8:48650435-48650652(-)$1	217	130	170	45.1107
GAGGCAGCGAGGAGCCACCUGAAGUCCCUCUGCUUCUUCG	chr16:72821492-72821755(-)$1	263	12	52	36.0397
ACGACGAGAGCGCCAUCGACUUCAGCGCCUACAUCGACUC	chr8:48650427-48650635(-)$1	208	113	153	45.1107

#DB
.(((.(((.((((...........)))))).).)))....	chr8:48650435-48650652(-)$1	1	130	170	45.1107
(((((((.(.(((...........)))).)))))))))))	chr16:72821492-72821755(-)$1	1	12	52	36.0397
.(((.(((.((((...........)))))).).)))....	chr8:48650427-48650635(-)$1	1	113	153	45.1107

#PSSM
$ : 0.66	= : 0.33	
c : 0.66	= : 0.33	
c : 0.66	= : 0.33	
c : 0.66	= : 0.33	
[ : 0.66	= : 0.33	
a : 0.66	= : 0.33	
b : 0.66	= : 0.33	
b : 0.66	[ : 0.33	
[ : 0.66	a : 0.33	
d : 0.66	[ : 0.33	
d : 0.66	c : 0.33	
d : 0.66	c : 0.33	
d : 0.66	c : 0.33	
t : 1.00	
t : 1.00	
t : 1.00	
t : 1.00	
t : 1.00	
t : 1.00	
t : 1.00	
t : 1.00	
t : 1.00	
t : 1.00	
t : 1.00	
d : 0.66	c : 0.33	
d : 0.66	c : 0.33	
d : 0.66	c : 0.33	
d : 0.66	a : 0.33	
b : 0.66	] : 0.33	
b : 0.66	= : 0.33	
] : 0.66	= : 0.33	
a : 0.66	= : 0.33	
] : 0.66	= : 0.33	
c : 0.66	= : 0.33	
c : 0.66	= : 0.33	
c : 0.66	= : 0.33	
4 : 0.66	= : 0.33	
4 : 0.66	= : 0.33	
4 : 0.66	= : 0.33	
4 : 0.66	= : 0.33	

#score	126.26119522073338
#seq	3
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_CDS_m2_run1.txt

#BEAR
fffff"""cccmmmmccc]ffffff22	chr19:46184811-46185130(+)$1	319	116	143	12.3668
ggggggg[ccclllcccggggggg22b	chr19:1416330-1416606(+)$1	276	25	52	9.7602
###a"""ddddllldddd333a333cc	chr19:36530488-36530766(+)$1	278	137	164	10.0180
ggggg"""cccmmmmccc4444ggggg	chr1:228329197-228329466(+)$1	269	25	52	14.2926
e[ffffffcccmmmmccc]ffffff]e	chr22:50016908-50017159(-)$1	251	54	81	11.1666
c[bb[bb[cccmmmmcccbb]bb]ccc	chr12:112036717-112036953(-)$1	236	17	44	10.8886
ggggg[ccc[ammmma22ccc]ggggg	chr19:15364350-15364609(-)$1	259	139	166	11.3602
eeee!!eeeeemmmmeeeee]eeeee4	chr17:27224484-27224745(-)$1	261	155	182	10.0623
eeeeea[ddddmmmmdddd]a]eeeee	chr12:49524078-49524342(-)$1	264	162	189	10.4922
ffeeeee[cccmmmmccceeeee4444	chr8:144909489-144909794(-)$1	305	82	109	10.9588
ccc[ccc[cccooooooccc]ccc]cc	chr20:32255821-32256089(-)$1	268	196	223	10.4555
ffff####cccooooooccc4444fff	chr2:241496663-241496950(-)$1	287	255	282	10.6304
[ccc[ffffffmmmmffffff]cccdd	chr20:32251547-32251822(-)$1	275	208	235	10.0475
ggg[ccc[cccmmmmccc]cccggggg	chr7:127669250-127669518(+)$1	268	8	35	12.9951
ddccc!!ddddmmmmdddd22ccc]dd	chr20:32255568-32255844(-)$1	276	41	68	11.2373
gggg####a[ammmma]a333gggggg	chr3:49050068-49050333(+)$1	265	136	163	13.5319
=======[bbmmmmbb]==========	chr11:637292-637538(+)$1	246	124	151	9.3725
[ccc"""ddddmmmmdddd333ccc]e	chr2:172379715-172379979(+)$1	264	53	80	12.9647
ggggg"""cccmmmmccc333gggggg	chr12:31477774-31478041(-)$1	267	75	102	14.5758
eeee"""cccooooooccc22eeeee8	chr19:2270508-2270789(+)$1	281	19	46	9.7272
eeee[bb[a[ammmma]a]bb]eeeee	chr17:79679324-79679578(+)$1	254	38	65	10.7406
ddccc!!ddddmmmmdddd22ccc]dd	chr20:32255763-32255994(-)$1	231	191	218	11.2373
cccdddd[cccmmmmccc]dddd]ccc	chr4:1321255-1321527(+)$1	272	70	97	11.0628
[ccc!!eeeeemmmmeeeee]ccc22c	chr11:66391878-66392115(+)$1	237	102	129	10.9161
[bbbb!!acccmmmmccc]a22bb]bb	chr12:31478058-31478342(-)$1	284	33	60	11.3587
[ccc"""ddddmmmmdddd333ccc]e	chr2:172379616-172379871(+)$1	255	152	179	12.9647
eeeee"""cccmmmmccceeeeedddd	chr1:26146934-26147219(+)$1	285	24	51	11.8840
eee"""eeeeemmmmeeeee4444eee	chr17:7476604-7476859(+)$1	255	192	219	10.5107
[abb####cccmmmmccc22bb]a]a]	chr19:3543229-3543512(-)$1	283	244	271	12.3962
hhhhhh!!cccmmmmccc22hhhhhhh	chr6:3259135-3259452(+)$1	317	8	35	10.6724
c[ccc[bbcccmmmmccc]bb]ccc]c	chr16:88772584-88772848(-)$1	264	13	40	12.1833
"ccc[bb[cccmmmmcccbb]ccceee	chr7:923807-924039(+)$1	232	187	214	12.0083
e[ccc[ccc[ammmma]cccccc]eee	chr1:155658010-155658348(-)$1	338	245	272	11.7638
[dddd!!ddddmmmmdddd333dddd]	chr1:1155979-1156229(-)$1	250	212	239	10.9185
ggggggg[cccmmmmccc]ggggggg:	chr9:140174190-140174434(+)$1	244	178	205	12.0738
eeebb"""cccmmmmccc]bb]eeeee	chr12:116714153-116714407(-)$1	254	125	152	12.4880
===========mmmm===========:	chr17:80789678-80789947(+)$1	269	75	102	11.0475
cc!!ccc[ccclllccc]ccc4444cc	chr5:138629688-138629911(+)$1	223	193	220	9.7441
[bb####ddddmmmmdddd333bb]ee	chr4:1804594-1804826(+)$1	232	155	182	11.5655
hhhh####cccmmmmccchhhhhhhh2	chr16:89043042-89043353(-)$1	311	231	258	11.3888
d"""ccc[cccmmmmccc]ccc333dd	chr22:50639562-50639858(+)$1	296	140	167	12.1845
eeee####cccooooooccc22eeeee	chr11:63884306-63884551(-)$1	245	144	171	10.6472
!!eeeee[cccmmmmccc]eeeee22b	chr19:2199740-2199993(+)$1	253	154	181	11.2719
ccccc[ccc[ammmmaccc]ccc]ccc	chr19:798419-798763(+)$1	344	138	165	12.0599
ccc####ddddmmmmdddd]ccc22==	chr10:70481118-70481409(+)$1	291	227	254	11.5401
eeeee"""cccooooooccc]eeeeeb	chr11:66392979-66393226(+)$1	247	131	158	10.1937
cgggggggcccmmmmccc333gggggg	chr21:45562980-45563231(+)$1	251	14	41	13.1438
[ccc!!eeeeemmmmeeeee]ccc22c	chr11:66391922-66392244(+)$1	322	58	85	10.9161
===========mmmm============	chr19:36517721-36517989(+)$1	268	17	44	11.9921
[ccc[ffffffmmmmffffff]cccdd	chr20:32251364-32251621(-)$1	257	7	34	10.0475
gggg####a[ammmma]a333gggggg	chr3:49050195-49050462(+)$1	267	9	36	13.5319
ggg[ccc[cccmmmmccc]cccggggg	chr7:127669130-127669365(+)$1	235	128	155	12.9951
gggggffffffmmmmffffff333ggg	chr7:1498849-1499105(-)$1	256	110	137	10.1394
fffff"""cccooooooccc22fffff	chr22:18256213-18256483(-)$1	270	180	207	10.1982
ffffffbbcccmmmmccc]bb]fffff	chr17:42255544-42255813(-)$1	269	189	216	10.6088
hhhhhbb[cccmmmmccc]bb]hhhhh	chr12:62996653-62996982(+)$1	329	195	222	10.7309
fffff"""cccmmmmccc]ffffff]a	chr16:89643768-89644078(+)$1	310	159	186	12.7544
cccccceeeeemmmmeeeee]ccc]cc	chr20:57581386-57581685(-)$1	299	210	237	10.3144

#otherMatches

#Seq PSSM
CCCGCCCUCUGGCGGCAGCGCGGGGUA	chr19:46184811-46185130(+)$1	319	116	143	12.3668
UUGCUCUCUGGAGACCAAGGGUGAUGA	chr19:1416330-1416606(+)$1	276	25	52	9.7602
AGACAAGGCAUGGGGUGCAGGGGUGCC	chr19:36530488-36530766(+)$1	278	137	164	10.0180
AGAGGCCAGGCGGGGGCUGAAUUCUCU	chr1:228329197-228329466(+)$1	269	25	52	14.2926
ugggguggcuccucagagauugcccaa	chr22:50016908-50017159(-)$1	251	54	81	11.1666
gcgcccgcgcguccccgccgcgUUCCG	chr12:112036717-112036953(-)$1	236	17	44	10.8886
CCAGCCGCAUCGCCAGUCUGCUGCUGG	chr19:15364350-15364609(-)$1	259	139	166	11.3602
GGGCAAUUGCCACACGGUGGGGCCCAA	chr17:27224484-27224745(-)$1	261	155	182	10.0623
CCGGGGGGCGCAAGAGCGCGCGCCCGG	chr12:49524078-49524342(-)$1	264	162	189	10.4922
CUUCAGCUCUCAUGGGAGGUUGAAUGG	chr8:144909489-144909794(-)$1	305	82	109	10.9588
GGCCGCAGGGCCGCGUAGCCGUGCCGC	chr20:32255821-32256089(-)$1	268	196	223	10.4555
CGCCAACGCCCGCUAGAGGGGAAGGGC	chr2:241496663-241496950(-)$1	287	255	282	10.6304
CUUCGCGGGGAGCCUUCCCCGGGGACC	chr20:32251547-32251822(-)$1	275	208	235	10.0475
UGGUAGGAACAGGCUUGUACUUUCGCG	chr7:127669250-127669518(+)$1	268	8	35	12.9951
CCGGCUAGCACCACGGUGUCUGCCAGG	chr20:32255568-32255844(-)$1	276	41	68	11.2373
GGGAAGGUCGUGUCAAGGUUGUCCCCA	chr3:49050068-49050333(+)$1	265	136	163	13.5319
UGGUGGGGGGCGUGCUGCUCAUCGGCG	chr11:637292-637538(+)$1	246	124	151	9.3725
GAAAAGAUUGCCGGAGCGAGAAUUUGC	chr2:172379715-172379979(+)$1	264	53	80	12.9647
CGGGCUGCGACCCUGGUCCUUGUCCGA	chr12:31477774-31478041(-)$1	267	75	102	14.5758
GCGCACUCCGACAGCCCGGCAGCGCCC	chr19:2270508-2270789(+)$1	281	19	46	9.7272
gcggggcgcggggcgcggggcgcugcg	chr17:79679324-79679578(+)$1	254	38	65	10.7406
CCGGCUAGCACCACGGUGUCUGCCAGG	chr20:32255763-32255994(-)$1	231	191	218	11.2373
GUCUGCUGGUGGACAUGCGGGUGCGGC	chr4:1321255-1321527(+)$1	272	70	97	11.0628
CGCGACCGCAGCCCUCUGCGCCGUUCA	chr11:66391878-66392115(+)$1	237	102	129	10.9161
UGCUCAACUCCGGAGGGAUGCGGAUGC	chr12:31478058-31478342(-)$1	284	33	60	11.3587
GAAAAGAUUGCCGGAGCGAGAAUUUGC	chr2:172379616-172379871(+)$1	255	152	179	12.9647
GGAGAGGGUCCGCGCGGGUCUCCGGCC	chr1:26146934-26147219(+)$1	285	24	51	11.8840
GCACAAGCCGGGCUAUUGGCAAACUGC	chr17:7476604-7476859(+)$1	255	192	219	10.5107
GGCCAGCGGGAACCCUCCAGGGACAGG	chr19:3543229-3543512(-)$1	283	244	271	12.3962
GGCCGAAAGCGAAAGCGCGCUCGGUCU	chr6:3259135-3259452(+)$1	317	8	35	10.6724
GGCGCCCUACGAUGACGUCAGCGCGGC	chr16:88772584-88772848(-)$1	264	13	40	12.1833
UCAGUGGUCCUGUCGAGGCUCCUGCUG	chr7:923807-924039(+)$1	232	187	214	12.0083
GUUCGCUUUGCGAGGGGAAACGAUCCC	chr1:155658010-155658348(-)$1	338	245	272	11.7638
UGCGUUUUGGGGGUCCCCAUGCAUGCU	chr1:1155979-1156229(-)$1	250	212	239	10.9185
GUCACCGGCUGCAAGCAGGUGGUGGCC	chr9:140174190-140174434(+)$1	244	178	205	12.0738
CUUACUAUGCUGGAGAGCCGUAAAGCC	chr12:116714153-116714407(-)$1	254	125	152	12.4880
ACACGGCCUUGGCAGUGGGGUUGUGUA	chr17:80789678-80789947(+)$1	269	75	102	11.0475
GGGGGAGGGAGGAGCUCGCUCGAGGCC	chr5:138629688-138629911(+)$1	223	193	220	9.7441
CCGAGAAGGCCUUUUGGCUGAGCGUUC	chr4:1804594-1804826(+)$1	232	155	182	11.5655
GGCCUCCUGGCAUCUGCCGGCUGCUCC	chr16:89043042-89043353(-)$1	311	231	258	11.3888
gccUGCUUCACCCGCGUGCAGCCCACC	chr22:50639562-50639858(+)$1	296	140	167	12.1845
CUGUUGAGGCCCUUGAAGGCAUGCAGC	chr11:63884306-63884551(-)$1	245	144	171	10.6472
GAUUUCCUCUCAGAAGAGUGGAGGGAG	chr19:2199740-2199993(+)$1	253	154	181	11.2719
GACGGCGAGACGAGGGCUCCCCGCUCU	chr19:798419-798763(+)$1	344	138	165	12.0599
CCCUCCUGGCCCCCCGGCCCGGGACAU	chr10:70481118-70481409(+)$1	291	227	254	11.5401
CGACGAUCCCUACAAAAAGGCUGUCGC	chr11:66392979-66393226(+)$1	247	131	158	10.1937
CCCGUGGCAGGGCAGCCUGGGGUCAUG	chr21:45562980-45563231(+)$1	251	14	41	13.1438
CGCGACCGCAGCCCUCUGCGCCGUUCA	chr11:66391922-66392244(+)$1	322	58	85	10.9161
UUGGGAUCCGAAGCUUCGGGUUCCAGA	chr19:36517721-36517989(+)$1	268	17	44	11.9921
CUUCGCGGGGAGCCUUCCCCGGGGACC	chr20:32251364-32251621(-)$1	257	7	34	10.0475
GGGAAGGUCGUGUCAAGGUUGUCCCCA	chr3:49050195-49050462(+)$1	267	9	36	13.5319
UGGUAGGAACAGGCUUGUACUUUCGCG	chr7:127669130-127669365(+)$1	235	128	155	12.9951
GCGGUUccgccgcgcggcgggcgcgcc	chr7:1498849-1499105(-)$1	256	110	137	10.1394
GGAGCAGAUGGACCCACCCAGAGCUCU	chr22:18256213-18256483(-)$1	270	180	207	10.1982
GCCUUGGCUGGUUCACCAUGCACAGGG	chr17:42255544-42255813(-)$1	269	189	216	10.6088
GGCGGCAGCCUCUGCGGGAUGCCCGCC	chr12:62996653-62996982(+)$1	329	195	222	10.7309
CUCACAGGUGCACUUGCAGGUGGGCAG	chr16:89643768-89644078(+)$1	310	159	186	12.7544
AUGUGGAUGGUGUCAACUAUGCCAGCA	chr20:57581386-57581685(-)$1	299	210	237	10.3144

#DB
(((((...(((....))).))))))..	chr19:46184811-46185130(+)$1	1	116	143	12.3668
(((((((.(((...))))))))))..)	chr19:1416330-1416606(+)$1	1	25	52	9.7602
...(...((((...))))...)...))	chr19:36530488-36530766(+)$1	1	137	164	10.0180
(((((...(((....)))....)))))	chr1:228329197-228329466(+)$1	1	25	52	14.2926
(.(((((((((....))).)))))).)	chr22:50016908-50017159(-)$1	1	54	81	11.1666
(.((.((.(((....))))).)).)))	chr12:112036717-112036953(-)$1	1	17	44	10.8886
(((((.(((.(....)..))).)))))	chr19:15364350-15364609(-)$1	1	139	166	11.3602
((((..(((((....))))).))))).	chr17:27224484-27224745(-)$1	1	155	182	10.0623
((((((.((((....)))).).)))))	chr12:49524078-49524342(-)$1	1	162	189	10.4922
(((((((.(((....))))))))....	chr8:144909489-144909794(-)$1	1	82	109	10.9588
(((.(((.(((......))).))).))	chr20:32255821-32256089(-)$1	1	196	223	10.4555
((((....(((......)))....)))	chr2:241496663-241496950(-)$1	1	255	282	10.6304
.(((.((((((....)))))).)))))	chr20:32251547-32251822(-)$1	1	208	235	10.0475
(((.(((.(((....))).))))))))	chr7:127669250-127669518(+)$1	1	8	35	12.9951
(((((..((((....))))..))).))	chr20:32255568-32255844(-)$1	1	41	68	11.2373
((((....(.(....).)...))))))	chr3:49050068-49050333(+)$1	1	136	163	13.5319
(((((((.((....)).))))))))))	chr11:637292-637538(+)$1	1	124	151	9.3725
.(((...((((....))))...))).)	chr2:172379715-172379979(+)$1	1	53	80	12.9647
(((((...(((....)))...))))))	chr12:31477774-31478041(-)$1	1	75	102	14.5758
((((...(((......)))..))))).	chr19:2270508-2270789(+)$1	1	19	46	9.7272
((((.((.(.(....).).)).)))))	chr17:79679324-79679578(+)$1	1	38	65	10.7406
(((((..((((....))))..))).))	chr20:32255763-32255994(-)$1	1	191	218	11.2373
(((((((.(((....))).)))).)))	chr4:1321255-1321527(+)$1	1	70	97	11.0628
.(((..(((((....))))).)))..)	chr11:66391878-66392115(+)$1	1	102	129	10.9161
.((((..((((....))).)..)).))	chr12:31478058-31478342(-)$1	1	33	60	11.3587
.(((...((((....))))...))).)	chr2:172379616-172379871(+)$1	1	152	179	12.9647
(((((...(((....))))))))((((	chr1:26146934-26147219(+)$1	1	24	51	11.8840
(((...(((((....)))))....)))	chr17:7476604-7476859(+)$1	1	192	219	10.5107
.(((....(((....)))..)).).).	chr19:3543229-3543512(-)$1	1	244	271	12.3962
((((((..(((....)))..)))))))	chr6:3259135-3259452(+)$1	1	8	35	10.6724
(.(((.(((((....))).)).))).)	chr16:88772584-88772848(-)$1	1	13	40	12.1833
.(((.((.(((....))))).))))))	chr7:923807-924039(+)$1	1	187	214	12.0083
(.(((.(((.(....).)))))).)))	chr1:155658010-155658348(-)$1	1	245	272	11.7638
.((((..((((....))))...)))).	chr1:1155979-1156229(-)$1	1	212	239	10.9185
(((((((.(((....))).))))))).	chr9:140174190-140174434(+)$1	1	178	205	12.0738
(((((...(((....))).)).)))))	chr12:116714153-116714407(-)$1	1	125	152	12.4880
(((((((((((....))))))))))).	chr17:80789678-80789947(+)$1	1	75	102	11.0475
((..(((.(((...))).)))....))	chr5:138629688-138629911(+)$1	1	193	220	9.7441
.((....((((....))))...)).))	chr4:1804594-1804826(+)$1	1	155	182	11.5655
((((....(((....))))))))))).	chr16:89043042-89043353(-)$1	1	231	258	11.3888
(...(((.(((....))).)))...))	chr22:50639562-50639858(+)$1	1	140	167	12.1845
((((....(((......)))..)))))	chr11:63884306-63884551(-)$1	1	144	171	10.6472
..(((((.(((....))).)))))..)	chr19:2199740-2199993(+)$1	1	154	181	11.2719
(((((.(((.(....)))).))).)))	chr19:798419-798763(+)$1	1	138	165	12.0599
(((....((((....)))).)))..))	chr10:70481118-70481409(+)$1	1	227	254	11.5401
(((((...(((......))).)))))(	chr11:66392979-66393226(+)$1	1	131	158	10.1937
(((((((((((....)))...))))))	chr21:45562980-45563231(+)$1	1	14	41	13.1438
.(((..(((((....))))).)))..)	chr11:66391922-66392244(+)$1	1	58	85	10.9161
(((((((((((....))))))))))))	chr19:36517721-36517989(+)$1	1	17	44	11.9921
.(((.((((((....)))))).)))))	chr20:32251364-32251621(-)$1	1	7	34	10.0475
((((....(.(....).)...))))))	chr3:49050195-49050462(+)$1	1	9	36	13.5319
(((.(((.(((....))).))))))))	chr7:127669130-127669365(+)$1	1	128	155	12.9951
(((((((((((....))))))...)))	chr7:1498849-1499105(-)$1	1	110	137	10.1394
(((((...(((......)))..)))))	chr22:18256213-18256483(-)$1	1	180	207	10.1982
(((((((((((....))).)).)))))	chr17:42255544-42255813(-)$1	1	189	216	10.6088
(((((((.(((....))).)).)))))	chr12:62996653-62996982(+)$1	1	195	222	10.7309
(((((...(((....))).)))))).)	chr16:89643768-89644078(+)$1	1	159	186	12.7544
(((((((((((....))))).))).))	chr20:57581386-57581685(-)$1	1	210	237	10.3144

#PSSM
e : 0.18	g : 0.17	[ : 0.17	c : 0.15	f : 0.10	d : 0.05	= : 0.05	h : 0.05	# : 0.01	" : 0.01	! : 0.01	
c : 0.22	g : 0.18	e : 0.15	f : 0.10	[ : 0.06	d : 0.05	= : 0.05	h : 0.05	b : 0.03	# : 0.01	a : 0.01	" : 0.01	! : 0.01	
c : 0.27	g : 0.18	e : 0.18	f : 0.10	b : 0.06	= : 0.05	h : 0.05	# : 0.01	d : 0.01	! : 0.01	" : 0.01	
c : 0.22	g : 0.15	e : 0.15	f : 0.10	b : 0.06	[ : 0.05	= : 0.05	h : 0.05	d : 0.03	" : 0.03	# : 0.03	a : 0.01	! : 0.01	
c : 0.18	# : 0.13	g : 0.12	f : 0.08	" : 0.08	[ : 0.08	e : 0.08	! : 0.05	= : 0.05	d : 0.03	b : 0.03	h : 0.03	
" : 0.22	# : 0.13	! : 0.12	c : 0.10	f : 0.08	b : 0.06	[ : 0.06	g : 0.05	= : 0.05	e : 0.03	a : 0.01	d : 0.01	h : 0.01	
" : 0.20	c : 0.13	# : 0.13	e : 0.12	b : 0.10	! : 0.08	f : 0.06	g : 0.05	= : 0.05	[ : 0.01	d : 0.01	
[ : 0.25	d : 0.15	" : 0.13	# : 0.10	e : 0.08	f : 0.06	c : 0.06	b : 0.03	= : 0.03	a : 0.01	! : 0.01	g : 0.01	
c : 0.60	d : 0.15	e : 0.08	f : 0.05	a : 0.05	= : 0.03	b : 0.01	
c : 0.55	d : 0.15	[ : 0.10	e : 0.08	f : 0.05	= : 0.03	b : 0.01	
c : 0.53	d : 0.15	a : 0.10	e : 0.08	f : 0.05	= : 0.03	m : 0.01	o : 0.01	
m : 0.84	o : 0.10	l : 0.05	
m : 0.84	o : 0.10	l : 0.05	
m : 0.84	o : 0.10	l : 0.05	
m : 0.82	o : 0.10	c : 0.03	d : 0.01	b : 0.01	
c : 0.44	d : 0.15	a : 0.10	o : 0.10	e : 0.08	f : 0.05	= : 0.03	b : 0.01	
c : 0.48	d : 0.15	e : 0.08	o : 0.08	] : 0.08	f : 0.05	= : 0.03	2 : 0.01	
c : 0.55	d : 0.15	e : 0.08	f : 0.05	a : 0.05	= : 0.05	g : 0.01	2 : 0.01	] : 0.01	
] : 0.25	c : 0.17	d : 0.13	e : 0.12	3 : 0.08	f : 0.05	= : 0.05	b : 0.03	2 : 0.03	g : 0.01	4 : 0.01	h : 0.01	
c : 0.18	3 : 0.15	e : 0.13	b : 0.12	f : 0.10	2 : 0.08	] : 0.05	= : 0.05	g : 0.03	4 : 0.01	d : 0.01	a : 0.01	h : 0.01	
3 : 0.15	] : 0.13	c : 0.13	f : 0.10	2 : 0.10	b : 0.10	4 : 0.05	e : 0.05	= : 0.05	g : 0.03	h : 0.03	a : 0.01	d : 0.01	
c : 0.22	] : 0.15	g : 0.10	e : 0.10	3 : 0.08	4 : 0.06	f : 0.05	= : 0.05	2 : 0.05	b : 0.03	h : 0.03	a : 0.01	d : 0.01	
c : 0.25	g : 0.17	e : 0.17	f : 0.08	3 : 0.05	b : 0.05	4 : 0.05	= : 0.05	h : 0.05	d : 0.03	] : 0.01	
c : 0.20	g : 0.17	e : 0.13	f : 0.08	] : 0.06	4 : 0.06	3 : 0.05	= : 0.05	h : 0.05	b : 0.03	d : 0.03	a : 0.01	2 : 0.01	
g : 0.17	e : 0.17	c : 0.13	] : 0.12	f : 0.10	2 : 0.08	= : 0.05	h : 0.05	3 : 0.03	4 : 0.03	d : 0.03	
e : 0.18	g : 0.17	c : 0.12	d : 0.12	2 : 0.08	] : 0.08	= : 0.06	f : 0.05	h : 0.05	4 : 0.01	b : 0.01	a : 0.01	
e : 0.18	c : 0.17	g : 0.15	d : 0.10	b : 0.06	f : 0.05	= : 0.05	2 : 0.03	4 : 0.03	] : 0.03	h : 0.03	: : 0.03	8 : 0.01	a : 0.01	

#score	661.1022147939104
#seq	58
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_UTR_m2_run2.txt

#BEAR
iffffffvvvvvvvvvvvvvffffff:	chrX:53439937-53440188(-)$1	251	28	55	23.6863
[ffffffvvvvvvvvvvvvvffffffc	chr17:36971015-36971268(-)$1	253	207	234	24.6537
!!eeeeevvvvvvvvvvvvveeeee]c	chr16:15736774-15737025(-)$1	251	16	43	26.0098
hh[ddddvvvvvvvvvvvvvdddd22h	chr1:93676310-93676572(+)$1	262	66	93	24.3085
%ccc[cccuuuuuuuuuuuuccc]ccc	chr2:55536201-55536461(-)$1	260	123	150	23.7333
!!eeeeeyyyyyyyyyyyyyyyyeeee	chr8:30469720-30470023(-)$1	303	37	64	20.7031
FFgggggggtttttttttttggggggg	chr7:104745981-104746200(+)$1	219	186	213	21.7416
hhhhhhhvvvvvvvvvvvvvhhhhhhh	chr1:16893572-16893827(-)$1	255	204	231	23.2989
eeeeyyyyyyyyyyyyyyyyeeeee33	chr2:182780666-182780942(+)$1	276	74	101	20.9352
[ffffffvvvvvvvvvvvvvffffff]	chr17:40882775-40883033(-)$1	258	98	125	24.7997
dd!!cccvvvvvvvvvvvvvccc5555	chr12:123001694-123001993(-)$1	299	82	109	22.5525
"bb!!bbvvvvvvvvvvvvvbb22bb4	chr3:128852814-128853045(-)$1	231	17	44	23.1204
========uuuuuuuuuuuu=======	chr12:100605953-100606234(+)$1	281	191	218	24.5803
ggggggavvvvvvvvvvvvva]ggggg	chr19:10261973-10262192(-)$1	219	168	195	25.5850
e####cccuuuuuuuuuuuuccc333e	chr6:161527471-161527756(+)$1	285	84	111	24.4044
%%a!!a[bbtttttttttttbb]a22a	chr16:89350143-89350426(-)$1	283	123	150	21.2519
d:ffffffuuuuuuuuuuuuffffff:	chr7:5764921-5765157(-)$1	236	189	216	21.2975
eeeecccvvvvvvvvvvvvvccc:::c	chr5:65474815-65475112(+)$1	297	231	258	22.3231
bb[bb[attttttttttta]bb]bb22	chr1:155883904-155884181(-)$1	277	155	182	20.5047
b[eeeeevvvvvvvvvvvvveeeee]b	chr2:47388761-47388964(-)$1	203	74	101	25.2142
=======vvvvvvvvvvvvv=======	chr3:101308957-101309205(+)$1	248	80	107	25.8121
cc[ddddvvvvvvvvvvvvvdddd333	chr19:8531022-8531243(+)$1	221	166	193	25.2737
hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr12:100617483-100617803(+)$1	320	255	282	21.6238
#ddddbbvvvvvvvvvvvvvbb]dddd	chr17:79637163-79637424(+)$1	261	91	118	23.3073
ccc!!cccuuuuuuuuuuuuccc22cc	chr9:131831068-131831319(+)$1	251	116	143	24.1081
hhhhhhhwwwwwwwwwwwwwwhhhhhh	chr2:26022175-26022505(-)$1	330	236	263	21.7938
c[a[ccctttttttttttccc]a]ccc	chr4:38907279-38907578(+)$1	299	2	29	22.3834
ccc!!cccuuuuuuuuuuuuccc22cc	chr14:73577746-73577964(+)$1	218	55	82	24.1081
ffeeeeevvvvvvvvvvvvveeeee88	chr17:20134970-20135239(+)$1	269	185	212	24.4356
!ccc"""bbtttttttttttbbccchh	chr9:101611261-101611583(+)$1	322	192	219	21.4567
!!a[cccvvvvvvvvvvvvvccca22c	chr20:31015830-31016129(+)$1	299	172	199	26.0924
""ffffffuuuuuuuuuuuuffffff]	chr7:151042334-151042558(+)$1	224	96	123	23.6996
hhhhhh[auuuuuuuuuuuuahhhhhh	chr7:148514890-148515177(-)$1	287	210	237	22.7642
!!eeeeevvvvvvvvvvvvveeeeeee	chr2:153530011-153530226(-)$1	215	160	187	25.5983
d!!fffffftttttttttttffffffd	chr3:142137560-142137803(-)$1	243	73	100	22.1282
ffffyyyyyyyyyyyyyyyyffffff2	chr2:38541649-38541905(-)$1	256	74	101	19.8502
d!!ddddwwwwwwwwwwwwwwdddd22	chr12:49231746-49231958(-)$1	212	8	35	23.2955
++++eeeeettttttttttteeeee22	chr16:249108-249339(-)$1	231	178	205	20.2685
ggggggwwwwwwwwwwwwwwggggggg	chr8:131140157-131140436(-)$1	279	66	93	23.9469
c!!ddddvvvvvvvvvvvvvdddd22c	chr5:122712987-122713264(-)$1	277	53	80	24.9933
e!!eeeeettttttttttteeeee333	chr12:80266498-80266797(-)$1	299	108	135	23.6618
##ffffffuuuuuuuuuuuuffffff3	chr2:101622373-101622626(+)$1	253	105	132	23.7648
=========ttttttttttt=======	chr15:58957195-58957443(-)$1	248	198	225	23.2993
d[eeeeevvvvvvvvvvvvveeeee]d	chr16:82197631-82197901(-)$1	270	87	114	25.4732
&&eeeeeuuuuuuuuuuuueeeee666	chr14:55429358-55429598(-)$1	240	121	148	21.2518
==[eeeeeuuuuuuuuuuuueeeee22	chr8:38688556-38688796(+)$1	240	82	109	24.5283
!eeeeewwwwwwwwwwwwwweeeee22	chr5:131939519-131939775(+)$1	256	64	91	24.0338
[ccc[cccuuuuuuuuuuuucccccc]	chr6:116973116-116973361(-)$1	245	119	146	24.4246
eee[cccvvvvvvvvvvvvvccc]eee	chr1:28169618-28169926(+)$1	308	65	92	25.2327
$$$cccwwwwwwwwwwwwwwccc4444	chr7:154767670-154767967(-)$1	297	262	289	23.5945
ee[ddddvvvvvvvvvvvvvdddd]ee	chr5:70806186-70806475(+)$1	289	223	250	24.2910
gggggggvvvvvvvvvvvvvggggggg	chr7:148515063-148515299(-)$1	236	199	226	25.6493
=======vvvvvvvvvvvvv=======	chr15:56155105-56155376(-)$1	271	21	48	25.8121
e"""cccvvvvvvvvvvvvvccc]eee	chr11:85375869-85376129(-)$1	260	216	243	25.3948
hhhhhhhwwwwwwwwwwwwwwhhhhhh	chr17:41258371-41258651(-)$1	280	57	84	21.7938
e!!eeeeeuuuuuuuuuuuueeeee22	chr18:71930459-71930784(-)$1	325	243	270	24.5581
##eeeeeuuuuuuuuuuuueeeee333	chr9:139905551-139905829(-)$1	278	92	119	24.2744
Jeeeee[auuuuuuuuuuuua]eeeee	chr16:69726540-69726795(+)$1	255	218	245	22.6878
ddd[ccctttttttttttccc]dddd5	chr2:170663193-170663495(+)$1	302	248	275	20.7414
c[ddddyyyyyyyyyyyyyyyyddddc	chr3:9484896-9485201(+)$1	305	52	79	19.8704
gggggggtttttttttttggggggg]a	chr1:154148532-154148788(-)$1	256	98	125	22.0530
e[gggggggtttttttttttggggggg	chr7:104747766-104748035(+)$1	269	69	96	22.9030
bffffffvvvvvvvvvvvvvffffff]	chr10:93683516-93683780(+)$1	264	201	228	24.3992

#otherMatches

#Seq PSSM
UGGCUCUGAGGGACCAGGAUGGAGCCA	chrX:53439937-53440188(-)$1	251	28	55	23.6863
CUAAGGCCAUUGAUUCUCUUGCUUUAC	chr17:36971015-36971268(-)$1	253	207	234	24.6537
ggaagcggaagugaagggugcgcuugg	chr16:15736774-15737025(-)$1	251	16	43	26.0098
GGCUUUAAAUCAUAUCUUUCUAAAUAC	chr1:93676310-93676572(+)$1	262	66	93	24.3085
AUGGAUCAAUACAAAUUUUAUGACCCA	chr2:55536201-55536461(-)$1	260	123	150	23.7333
AAUCCCAAAAUUGAAGUAAUAGAUGGG	chr8:30469720-30470023(-)$1	303	37	64	20.7031
UAGAAUGAGCCAAAUGCCAACUCAUUC	chr7:104745981-104746200(+)$1	219	186	213	21.7416
GGGUCAUAUUCCUACUGCAAAUGGCCC	chr1:16893572-16893827(-)$1	255	204	231	23.2989
GGUCAGUCUUUAGUUAAAUCGACCAUU	chr2:182780666-182780942(+)$1	276	74	101	20.9352
UGGACACCUGUUCUGCUGUUGUGUCCU	chr17:40882775-40883033(-)$1	258	98	125	24.7997
GAGAUCCAGAAGCAGAGAGAGGAAGAA	chr12:123001694-123001993(-)$1	299	82	109	22.5525
GUUAGUGGAAAAGUGGAAAGCAGAGAG	chr3:128852814-128853045(-)$1	231	17	44	23.1204
ACAAUCUAAGAAUUGGAAAGUAGAUUG	chr12:100605953-100606234(+)$1	281	191	218	24.5803
AGGUUGCCCUCUAGUAUCUCGCCAACC	chr19:10261973-10262192(-)$1	219	168	195	25.5850
UAAACUAGGACCCAUAGAAGCUAUCCA	chr6:161527471-161527756(+)$1	285	84	111	24.4044
GAGGACAGCAAGGAGAGGAGGCGGGAC	chr16:89350143-89350426(-)$1	283	123	150	21.2519
CAAGUUUGAACAAGGUAAUGCAAACUG	chr7:5764921-5765157(-)$1	236	189	216	21.2975
UGGAGGCUCUUUUAAAAAAUGCUAGUU	chr5:65474815-65475112(+)$1	297	231	258	22.3231
ACAUGGAGGUCAUAAAAAUGCAAGUAG	chr1:155883904-155884181(-)$1	277	155	182	20.5047
UGAUGGUGAUGGUCAAGUAAACUAUGA	chr2:47388761-47388964(-)$1	203	74	101	25.2142
UUUACUUACUUUUUUCUUUAGAGUGAA	chr3:101308957-101309205(+)$1	248	80	107	25.8121
ACAUUCUUGAAGAUAAAGAUGGAAAAA	chr19:8531022-8531243(+)$1	221	166	193	25.2737
AGUUCCUUUUAAAAGAGGUUAAGGAAC	chr12:100617483-100617803(+)$1	320	255	282	21.6238
CCCAGGUGACCUUCAGAAAGACAUUGG	chr17:79637163-79637424(+)$1	261	91	118	23.3073
cugaguccaaaaucAGAGGAGGAAGCA	chr9:131831068-131831319(+)$1	251	116	143	24.1081
AGGUGGAAAAGGAAAGGUAAAUCCACC	chr2:26022175-26022505(-)$1	330	236	263	21.7938
UUCUUGGACUUUAUUACACCAUGUGCA	chr4:38907279-38907578(+)$1	299	2	29	22.3834
CUCACCAGAUCAACAGCAACCUGAGGA	chr14:73577746-73577964(+)$1	218	55	82	24.1081
GUGGGAGCCUUCACCACCAUCUUCCUA	chr17:20134970-20135239(+)$1	269	185	212	24.4356
CCAGAACCCACCAAAAACUAGGCUGCA	chr9:101611261-101611583(+)$1	322	192	219	21.4567
GAGAGCUGUGGGUCUAAUGAAGCCAGC	chr20:31015830-31016129(+)$1	299	172	199	26.0924
CAGGGAUGGCACAAAAGAAAUAUCUUC	chr7:151042334-151042558(+)$1	224	96	123	23.6996
UAAGACACGUCUAAUAACUGGGUUUUA	chr7:148514890-148515177(-)$1	287	210	237	22.7642
AAGCAUGUAUUAUGGAUUUUUAUGUGA	chr2:153530011-153530226(-)$1	215	160	187	25.5983
UUUACAGGGCCAGGAAAAUUCUCUGUG	chr3:142137560-142137803(-)$1	243	73	100	22.1282
UAUUUUAACUAACUCUAUUUAAUAGUU	chr2:38541649-38541905(-)$1	256	74	101	19.8502
UUUUGGGUUCCCUGCCAUCUCCCCAUC	chr12:49231746-49231958(-)$1	212	8	35	23.2955
ACCUUGGUCUCCAUGACAAUGACCGUC	chr16:249108-249339(-)$1	231	178	205	20.2685
AAAGACUUUUUUCCUCUUAUGUUUUUA	chr8:131140157-131140436(-)$1	279	66	93	23.9469
GAACUGCAAUCAGAACGUCAGCGGAAC	chr5:122712987-122713264(-)$1	277	53	80	24.9933
GAAGUUUCUGGUAGAAAAUGGAGCAAA	chr12:80266498-80266797(-)$1	299	108	135	23.6618
UCACCAAAUAAGCUAUAUACUUUGGUU	chr2:101622373-101622626(+)$1	253	105	132	23.7648
GAUGUAUAUCUACAUUUAAAAUAUAUG	chr15:58957195-58957443(-)$1	248	198	225	23.2993
UGUUUGUUUUCACAGUUUAUGCAAAGG	chr16:82197631-82197901(-)$1	270	87	114	25.4732
AAACCAGAAAUACAUAAGCCUGGUGAG	chr14:55429358-55429598(-)$1	240	121	148	21.2518
UUAGGCAUAGAGAAGGAGACGUGCCAG	chr8:38688556-38688796(+)$1	240	82	109	24.5283
AAGGAAAUCAUUUUGUUAUAUUCUUAA	chr5:131939519-131939775(+)$1	256	64	91	24.0338
GGUUGUGGUUACAGAAAUUUCCAAAUG	chr6:116973116-116973361(-)$1	245	119	146	24.4246
AACCCUGGCUUAGAACCUGACAGAGUU	chr1:28169618-28169926(+)$1	308	65	92	25.2327
AAACAGGAGAGAAAUUUAAACUGGACC	chr7:154767670-154767967(-)$1	297	262	289	23.5945
AGCCUGUAGAUGAAAUGGAGACAGACU	chr5:70806186-70806475(+)$1	289	223	250	24.2910
CCAGCACCCCCACCAUUAAUGUGCUGG	chr7:148515063-148515299(-)$1	236	199	226	25.6493
UUAAAUUUCCUUUAGCAUAUAAUUUAG	chr15:56155105-56155376(-)$1	271	21	48	25.8121
CAUAGCCUGACCAAGCUGCUGGCAGCC	chr11:85375869-85376129(-)$1	260	216	243	25.3948
AAGGAAGUAAAUUAAAUUGUUCUUUCU	chr17:41258371-41258651(-)$1	280	57	84	21.7938
UAUCAGAUGACCUUACCCUAGUCUGUA	chr18:71930459-71930784(-)$1	325	243	270	24.5581
CUGAAAAGCUGCUUCCUCAUUUUCCCC	chr9:139905551-139905829(-)$1	278	92	119	24.2744
ACUGGAACACAAGCAAAACAGAUUCAG	chr16:69726540-69726795(+)$1	255	218	245	22.6878
GGACAUAACUUAAAAAAAUAUUUUCCU	chr2:170663193-170663495(+)$1	302	248	275	20.7414
CAUGGUCUUUAUGAAAAAUCCAACCAG	chr3:9484896-9485201(+)$1	305	52	79	19.8704
UCCAGCUGGUUGAAGAAGAGCUGGACC	chr1:154148532-154148788(-)$1	256	98	125	22.0530
ACAUUGGGGCCUUUUAGAAAUUCUAAU	chr7:104747766-104748035(+)$1	269	69	96	22.9030
CGGCCGCUCCCCUGUGCUCCGCGGCCU	chr10:93683516-93683780(+)$1	264	201	228	24.3992

#DB
)((((((.............)))))).	chrX:53439937-53440188(-)$1	1	28	55	23.6863
.((((((.............)))))))	chr17:36971015-36971268(-)$1	1	207	234	24.6537
..(((((.............))))).)	chr16:15736774-15737025(-)$1	1	16	43	26.0098
((.((((.............))))..)	chr1:93676310-93676572(+)$1	1	66	93	24.3085
.(((.(((............))).)))	chr2:55536201-55536461(-)$1	1	123	150	23.7333
..(((((................))))	chr8:30469720-30470023(-)$1	1	37	64	20.7031
))(((((((...........)))))))	chr7:104745981-104746200(+)$1	1	186	213	21.7416
(((((((.............)))))))	chr1:16893572-16893827(-)$1	1	204	231	23.2989
((((................)))))..	chr2:182780666-182780942(+)$1	1	74	101	20.9352
.((((((.............)))))).	chr17:40882775-40883033(-)$1	1	98	125	24.7997
((..(((.............)))....	chr12:123001694-123001993(-)$1	1	82	109	22.5525
.((..((.............))..)).	chr3:128852814-128853045(-)$1	1	17	44	23.1204
((((((((............)))))))	chr12:100605953-100606234(+)$1	1	191	218	24.5803
(((((((.............).)))))	chr19:10261973-10262192(-)$1	1	168	195	25.5850
(....(((............)))...)	chr6:161527471-161527756(+)$1	1	84	111	24.4044
..(..(.((...........)).)..)	chr16:89350143-89350426(-)$1	1	123	150	21.2519
).((((((............)))))).	chr7:5764921-5765157(-)$1	1	189	216	21.2975
))))(((.............)))...(	chr5:65474815-65475112(+)$1	1	231	258	22.3231
((.((.(...........).)).))..	chr1:155883904-155884181(-)$1	1	155	182	20.5047
(.(((((.............))))).)	chr2:47388761-47388964(-)$1	1	74	101	25.2142
(((((((.............)))))))	chr3:101308957-101309205(+)$1	1	80	107	25.8121
((.((((.............))))...	chr19:8531022-8531243(+)$1	1	166	193	25.2737
((((((((............)))))))	chr12:100617483-100617803(+)$1	1	255	282	21.6238
.((((((.............)).))))	chr17:79637163-79637424(+)$1	1	91	118	23.3073
(((..(((............)))..))	chr9:131831068-131831319(+)$1	1	116	143	24.1081
(((((((..............))))))	chr2:26022175-26022505(-)$1	1	236	263	21.7938
(.(.(((...........))).).)))	chr4:38907279-38907578(+)$1	1	2	29	22.3834
(((..(((............)))..))	chr14:73577746-73577964(+)$1	1	55	82	24.1081
(((((((.............)))))..	chr17:20134970-20135239(+)$1	1	185	212	24.4356
.(((...((...........)))))))	chr9:101611261-101611583(+)$1	1	192	219	21.4567
..(.(((.............))))..)	chr20:31015830-31016129(+)$1	1	172	199	26.0924
..((((((............)))))).	chr7:151042334-151042558(+)$1	1	96	123	23.6996
((((((.(............)))))))	chr7:148514890-148515177(-)$1	1	210	237	22.7642
..(((((.............)))))))	chr2:153530011-153530226(-)$1	1	160	187	25.5983
(..((((((...........)))))))	chr3:142137560-142137803(-)$1	1	73	100	22.1282
((((................)))))).	chr2:38541649-38541905(-)$1	1	74	101	19.8502
(..((((..............))))..	chr12:49231746-49231958(-)$1	1	8	35	23.2955
....(((((...........)))))..	chr16:249108-249339(-)$1	1	178	205	20.2685
((((((..............)))))))	chr8:131140157-131140436(-)$1	1	66	93	23.9469
(..((((.............))))..)	chr5:122712987-122713264(-)$1	1	53	80	24.9933
(..(((((...........)))))...	chr12:80266498-80266797(-)$1	1	108	135	23.6618
..((((((............)))))).	chr2:101622373-101622626(+)$1	1	105	132	23.7648
(((((((((...........)))))))	chr15:58957195-58957443(-)$1	1	198	225	23.2993
(.(((((.............))))).)	chr16:82197631-82197901(-)$1	1	87	114	25.4732
..(((((............)))))...	chr14:55429358-55429598(-)$1	1	121	148	21.2518
((.(((((............)))))..	chr8:38688556-38688796(+)$1	1	82	109	24.5283
.(((((..............)))))..	chr5:131939519-131939775(+)$1	1	64	91	24.0338
.(((.(((............)))))).	chr6:116973116-116973361(-)$1	1	119	146	24.4246
(((.(((.............))).)))	chr1:28169618-28169926(+)$1	1	65	92	25.2327
...(((..............)))....	chr7:154767670-154767967(-)$1	1	262	289	23.5945
((.((((.............)))).))	chr5:70806186-70806475(+)$1	1	223	250	24.2910
(((((((.............)))))))	chr7:148515063-148515299(-)$1	1	199	226	25.6493
(((((((.............)))))))	chr15:56155105-56155376(-)$1	1	21	48	25.8121
(...(((.............))).)))	chr11:85375869-85376129(-)$1	1	216	243	25.3948
(((((((..............))))))	chr17:41258371-41258651(-)$1	1	57	84	21.7938
(..(((((............)))))..	chr18:71930459-71930784(-)$1	1	243	270	24.5581
..(((((............)))))...	chr9:139905551-139905829(-)$1	1	92	119	24.2744
)(((((.(............).)))))	chr16:69726540-69726795(+)$1	1	218	245	22.6878
(((.(((...........))).)))).	chr2:170663193-170663495(+)$1	1	248	275	20.7414
(.((((................)))))	chr3:9484896-9485201(+)$1	1	52	79	19.8704
(((((((...........))))))).)	chr1:154148532-154148788(-)$1	1	98	125	22.0530
(.(((((((...........)))))))	chr7:104747766-104748035(+)$1	1	69	96	22.9030
(((((((.............)))))).	chr10:93683516-93683780(+)$1	1	201	228	24.3992

#PSSM
e : 0.14	! : 0.09	h : 0.09	d : 0.09	c : 0.09	= : 0.07	g : 0.06	[ : 0.04	b : 0.04	# : 0.04	% : 0.03	" : 0.03	f : 0.03	i : 0.01	F : 0.01	+ : 0.01	& : 0.01	$ : 0.01	J : 0.01	
! : 0.14	f : 0.09	h : 0.09	c : 0.09	e : 0.09	= : 0.07	[ : 0.07	g : 0.06	d : 0.04	# : 0.04	b : 0.03	" : 0.03	F : 0.01	% : 0.01	: : 0.01	+ : 0.01	& : 0.01	$ : 0.01	
e : 0.20	f : 0.12	g : 0.09	! : 0.09	[ : 0.07	c : 0.07	h : 0.07	= : 0.06	a : 0.04	d : 0.04	b : 0.01	# : 0.01	+ : 0.01	$ : 0.01	" : 0.01	
e : 0.23	f : 0.14	d : 0.11	g : 0.09	h : 0.07	! : 0.07	c : 0.06	= : 0.06	[ : 0.06	# : 0.01	b : 0.01	+ : 0.01	" : 0.01	
e : 0.22	f : 0.12	c : 0.12	d : 0.11	g : 0.09	h : 0.07	! : 0.06	= : 0.06	[ : 0.03	y : 0.03	# : 0.01	b : 0.01	" : 0.01	
e : 0.22	c : 0.20	f : 0.12	d : 0.09	g : 0.09	h : 0.07	= : 0.06	y : 0.03	b : 0.03	a : 0.01	[ : 0.01	" : 0.01	
e : 0.19	c : 0.19	f : 0.12	d : 0.07	g : 0.06	h : 0.06	= : 0.06	y : 0.04	[ : 0.04	w : 0.04	b : 0.03	a : 0.03	" : 0.01	
v : 0.39	w : 0.09	c : 0.07	y : 0.06	f : 0.06	t : 0.06	e : 0.06	g : 0.03	= : 0.03	b : 0.03	a : 0.03	u : 0.03	h : 0.01	
v : 0.39	u : 0.25	w : 0.09	t : 0.07	y : 0.06	g : 0.03	b : 0.03	f : 0.01	e : 0.01	= : 0.01	
v : 0.39	u : 0.25	t : 0.19	w : 0.09	y : 0.06	
v : 0.39	u : 0.25	t : 0.19	w : 0.09	y : 0.06	
v : 0.39	u : 0.25	t : 0.19	w : 0.09	y : 0.06	
v : 0.39	u : 0.25	t : 0.19	w : 0.09	y : 0.06	
v : 0.39	u : 0.25	t : 0.19	w : 0.09	y : 0.06	
v : 0.39	u : 0.25	t : 0.19	w : 0.09	y : 0.06	
v : 0.39	u : 0.25	t : 0.19	w : 0.09	y : 0.06	
v : 0.39	u : 0.25	t : 0.19	w : 0.09	y : 0.06	
v : 0.39	u : 0.25	t : 0.19	w : 0.09	y : 0.06	
v : 0.39	u : 0.25	t : 0.12	w : 0.09	y : 0.06	c : 0.03	a : 0.01	g : 0.01	
v : 0.39	u : 0.22	t : 0.11	w : 0.09	y : 0.06	e : 0.04	c : 0.03	] : 0.01	g : 0.01	
e : 0.20	c : 0.20	f : 0.14	g : 0.07	b : 0.07	d : 0.06	= : 0.06	a : 0.04	w : 0.04	y : 0.03	h : 0.03	
e : 0.20	c : 0.17	f : 0.14	d : 0.07	g : 0.07	h : 0.07	b : 0.07	= : 0.06	] : 0.06	y : 0.03	
e : 0.22	c : 0.19	f : 0.14	d : 0.11	g : 0.09	h : 0.07	= : 0.06	] : 0.04	y : 0.01	2 : 0.01	a : 0.01	
e : 0.23	f : 0.14	d : 0.12	g : 0.09	h : 0.07	] : 0.06	= : 0.06	2 : 0.04	a : 0.03	c : 0.03	5 : 0.01	3 : 0.01	: : 0.01	b : 0.01	4 : 0.01	
e : 0.22	f : 0.14	2 : 0.09	g : 0.09	h : 0.07	c : 0.06	= : 0.06	3 : 0.06	d : 0.06	b : 0.03	5 : 0.01	: : 0.01	6 : 0.01	4 : 0.01	] : 0.01	
2 : 0.15	f : 0.14	e : 0.09	h : 0.09	c : 0.07	g : 0.07	3 : 0.07	] : 0.06	= : 0.06	d : 0.04	5 : 0.01	b : 0.01	: : 0.01	8 : 0.01	6 : 0.01	4 : 0.01	
c : 0.15	h : 0.11	e : 0.11	2 : 0.11	g : 0.07	3 : 0.07	] : 0.06	= : 0.06	d : 0.04	: : 0.03	5 : 0.03	4 : 0.03	a : 0.03	b : 0.01	8 : 0.01	6 : 0.01	

#score	1475.339930788142
#seq	63
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_UTR_m2_run2.txt

#BEAR
eeee[ccclllccceee	chr20:17608143-17608393(-)$1	250	200	217	5.8944
gggggggmmmmgggggg	chr17:76969118-76969330(-)$1	212	133	150	8.7284
hhh[cccmmmmccchhh	chr17:79803720-79803966(-)$1	246	140	157	7.8757
dddd[bbmmmmbb]ddd	chr9:116824911-116825127(-)$1	216	144	161	7.3748
gggggggoooooogggg	chr6:167369869-167370109(-)$1	240	77	94	6.0082
hhh!!bbmmmmbb22hh	chr9:116999160-116999366(+)$1	206	104	121	7.3644
iiiiiiimmmmiiiiii	chr11:75111333-75111571(+)$1	238	18	35	8.3748
ggggggglllggggggg	chr6:24357741-24358074(-)$1	333	8	25	6.2594
gggggggmmmmgggggg	chr1:11994685-11994925(+)$1	240	181	198	8.7284
ffffcccmmmmccc444	chr9:116997779-116997987(+)$1	208	36	53	7.8402
gggggggmmmmgggggg	chr17:76969076-76969292(-)$1	216	95	112	8.7284
eee[cccmmmmccceee	chr17:79813007-79813226(-)$1	219	184	201	8.5015
d[eeeeemmmmeeeee]	chr3:133472368-133472645(+)$1	277	187	204	7.1125
eee[cccmmmmccc22e	chr17:46052495-46052763(+)$1	268	210	227	8.2651
c[eeeeemmmmeeeee]	chr4:1809190-1809416(+)$1	226	33	50	7.1818
ddddddammmma]dddd	chr17:27047493-27047697(+)$1	204	102	119	7.0232
[ffffffmmmmffffff	chr1:11986199-11986445(-)$1	246	154	171	7.7090
ggggggglllggggggg	chr6:43100175-43100431(+)$1	256	161	178	6.2594
!ccc[ccclllccc]cc	chr21:46915235-46915447(+)$1	212	30	47	6.0330
ddddddammmma]dddd	chr17:27047497-27047725(+)$1	228	98	115	7.0232
hhh!!bbmmmmbb22hh	chr9:116999166-116999409(+)$1	243	98	115	7.3644
gffffffmmmmffffff	chr9:117008045-117008260(+)$1	215	104	121	7.7326
c!!ddddmmmmdddd]c	chr9:116997816-116998032(+)$1	216	180	197	6.8736
$dddd[ammmma]dddd	chr16:2164068-2164313(-)$1	245	205	222	6.9447
c!!ddddmmmmdddd]c	chr9:116997787-116998016(+)$1	229	209	226	6.8736
dddd[bbmmmmbb]ddd	chr9:117027267-117027490(+)$1	223	93	110	7.3748
eeeeebbmmmmbb]eee	chr6:119670186-119670424(-)$1	238	121	138	7.7855
gggggbbmmmmbb22gg	chr20:60889758-60889985(-)$1	227	29	46	8.1883
ff"""bbmmmmbb333f	chr9:96009765-96010121(+)$1	356	80	97	7.7647
gggggggmmmmgggggg	chr16:2802588-2802878(+)$1	290	25	42	8.7284
effffffmmmmffffff	chr2:11484516-11484760(-)$1	244	96	113	7.6452
!!bbcccmmmmccc]bb	chr9:116840348-116840591(-)$1	243	91	108	7.2343
gggggggmmmmgggggg	chr11:67810657-67810935(+)$1	278	220	237	8.7284
:ffffffmmmmffffff	chr20:60911307-60911584(-)$1	277	6	23	6.5796
ddd[cccmmmmccc]dd	chr9:117032907-117033160(+)$1	253	1	18	8.2284
gggggggoooooogggg	chr17:76968194-76968440(-)$1	246	12	29	6.0082
c[ccc[ammmma]ccc]	chr11:1774751-1774973(-)$1	222	157	174	8.1208
ff!!cccmmmmcccfff	chr17:79804207-79804428(-)$1	221	141	158	8.3645
ddd[abbmmmmbb]a]d	chr16:89839650-89839893(-)$1	243	53	70	7.7143
eee[cccmmmmccceee	chr17:79812989-79813207(-)$1	218	165	182	8.5015
eeeee[ammmma]eeee	chr17:76968289-76968551(-)$1	262	1	18	7.8399
iiiiiiimmmmiiiiii	chr9:117044668-117044912(+)$1	244	152	169	8.3748
ddd[cccmmmmccc22d	chr8:11705103-11705347(-)$1	244	220	237	7.9613
ffffcccmmmmccc]ff	chr2:220435942-220436229(-)$1	287	141	158	8.3314
ccc!!bbmmmmbb]ccc	chr3:50095247-50095527(+)$1	280	233	250	8.0249
!ffffffmmmmffffff	chr17:79918551-79918888(-)$1	337	287	304	7.7237
"ffffffmmmmffffff	chr9:117073226-117073444(+)$1	218	77	94	7.5735
fff[a[ammmma]a]ff	chr17:80193757-80193980(+)$1	223	136	153	8.1891
eeeeebbmmmmbb]eee	chr6:167369764-167370029(-)$1	265	122	139	7.7855
gggggggmmmmgggggg	chr17:64224097-64224346(-)$1	249	146	163	8.7284

#otherMatches

#Seq PSSM
GCCCUGCUGGAGGCGGG	chr20:17608143-17608393(-)$1	250	200	217	5.8944
CAGGGCGAGGACGCCCU	chr17:76969118-76969330(-)$1	212	133	150	8.7284
GCAGCCUGUCAAGGUGC	chr17:79803720-79803966(-)$1	246	140	157	7.8757
UGGUAACUGAAGUCACC	chr9:116824911-116825127(-)$1	216	144	161	7.3748
CGCGACUGACCGUGGUC	chr6:167369869-167370109(-)$1	240	77	94	6.0082
GCCAGGGGUUGCCAGGG	chr9:116999160-116999366(+)$1	206	104	121	7.3644
UACAGUGUCUUUGCUGU	chr11:75111333-75111571(+)$1	238	18	35	8.3748
CCGCGCCCUGGGUGCGG	chr6:24357741-24358074(-)$1	333	8	25	6.2594
GGCUGGCUGCUGCUGGC	chr1:11994685-11994925(+)$1	240	181	198	8.7284
UGGGGGAGGCUUCCAGA	chr9:116997779-116997987(+)$1	208	36	53	7.8402
CAGGGCGAGGACGCCCU	chr17:76969076-76969292(-)$1	216	95	112	8.7284
AGAUGGGGUUGUCCUCU	chr17:79813007-79813226(-)$1	219	184	201	8.5015
UCCCUGGGACCCCAGGA	chr3:133472368-133472645(+)$1	277	187	204	7.1125
GAGCGGCGGCAGCCUCU	chr17:46052495-46052763(+)$1	268	210	227	8.2651
AACGGUCUCCUGACUGG	chr4:1809190-1809416(+)$1	226	33	50	7.1818
CUGACACUUGUGAUGUC	chr17:27047493-27047697(+)$1	204	102	119	7.0232
UGGCUGCAGCAGCGGCU	chr1:11986199-11986445(-)$1	246	154	171	7.7090
UAUUGCUGAAAGUGAUG	chr6:43100175-43100431(+)$1	256	161	178	6.2594
CCCCAGGGUCGCCCCGG	chr21:46915235-46915447(+)$1	212	30	47	6.0330
CUGACACUUGUGAUGUC	chr17:27047497-27047725(+)$1	228	98	115	7.0232
GCCAGGGGUUGCCAGGG	chr9:116999166-116999409(+)$1	243	98	115	7.3644
AACCAGGGGAUCCUGGU	chr9:117008045-117008260(+)$1	215	104	121	7.7326
GCUUCCUUCCUAGGGUC	chr9:116997816-116998032(+)$1	216	180	197	6.8736
ACAGGGCGUGAGGCCUG	chr16:2164068-2164313(-)$1	245	205	222	6.9447
GCUUCCUUCCUAGGGUC	chr9:116997787-116998016(+)$1	229	209	226	6.8736
CGAGGCCACUUGGGCUC	chr9:117027267-117027490(+)$1	223	93	110	7.3748
GCCGCGGACUCCCAGCG	chr6:119670186-119670424(-)$1	238	121	138	7.7855
AUCCUGGAGAACCGUGG	chr20:60889758-60889985(-)$1	227	29	46	8.1883
GAGAGUGACGUCAAGAU	chr9:96009765-96010121(+)$1	356	80	97	7.7647
UGCGUGCUGACGCACGC	chr16:2802588-2802878(+)$1	290	25	42	8.7284
uggcCCAGGCCUGGGCU	chr2:11484516-11484760(-)$1	244	96	113	7.6452
AGCCCAUAGCCAUGAGG	chr9:116840348-116840591(-)$1	243	91	108	7.2343
CUAGAGCGCCUGCUCUG	chr11:67810657-67810935(+)$1	278	220	237	8.7284
CAGGGCUCUAUGGCUCU	chr20:60911307-60911584(-)$1	277	6	23	6.5796
GGGUCAGGGUCCUGCCC	chr9:117032907-117033160(+)$1	253	1	18	8.2284
UGGGGGGAGCGUGCCUC	chr17:76968194-76968440(-)$1	246	12	29	6.0082
GGCGACGUCUUCAUCGG	chr11:1774751-1774973(-)$1	222	157	174	8.1208
GGCCAGGGCUGCCUCCC	chr17:79804207-79804428(-)$1	221	141	158	8.3645
GAGUCCUGUUGAGUGUC	chr16:89839650-89839893(-)$1	243	53	70	7.7143
AGAUGGGGUUGUCCUCU	chr17:79812989-79813207(-)$1	218	165	182	8.5015
CCUUGACGCAGGCCGAG	chr17:76968289-76968551(-)$1	262	1	18	7.8399
UCCCGGGGCAGCCUGGG	chr9:117044668-117044912(+)$1	244	152	169	8.3748
CUCACGCUGCAGCGAAG	chr8:11705103-11705347(-)$1	244	220	237	7.9613
CCCGGGAGAGCUCCGCG	chr2:220435942-220436229(-)$1	287	141	158	8.3314
UGGAGCAUAGAUGGCCA	chr3:50095247-50095527(+)$1	280	233	250	8.0249
ACAUGGACAGCUUCAUG	chr17:79918551-79918888(-)$1	337	287	304	7.7237
AUUCAAGCCAACUUGAG	chr9:117073226-117073444(+)$1	218	77	94	7.5735
GCCGUGGUGGACGAGGG	chr17:80193757-80193980(+)$1	223	136	153	8.1891
GGCCCGGGUCGCCAGGG	chr6:167369764-167370029(-)$1	265	122	139	7.7855
GGAUGAGAAAGUUUAUC	chr17:64224097-64224346(-)$1	249	146	163	8.7284

#DB
((((.(((...))))))	chr20:17608143-17608393(-)$1	1	200	217	5.8944
(((((((....))))))	chr17:76969118-76969330(-)$1	1	133	150	8.7284
(((.(((....))))))	chr17:79803720-79803966(-)$1	1	140	157	7.8757
((((.((....)).)))	chr9:116824911-116825127(-)$1	1	144	161	7.3748
(((((((......))))	chr6:167369869-167370109(-)$1	1	77	94	6.0082
(((..((....))..))	chr9:116999160-116999366(+)$1	1	104	121	7.3644
(((((((....))))))	chr11:75111333-75111571(+)$1	1	18	35	8.3748
(((((((...)))))))	chr6:24357741-24358074(-)$1	1	8	25	6.2594
(((((((....))))))	chr1:11994685-11994925(+)$1	1	181	198	8.7284
(((((((....)))...	chr9:116997779-116997987(+)$1	1	36	53	7.8402
(((((((....))))))	chr17:76969076-76969292(-)$1	1	95	112	8.7284
(((.(((....))))))	chr17:79813007-79813226(-)$1	1	184	201	8.5015
(.(((((....))))).	chr3:133472368-133472645(+)$1	1	187	204	7.1125
(((.(((....)))..)	chr17:46052495-46052763(+)$1	1	210	227	8.2651
(.(((((....))))).	chr4:1809190-1809416(+)$1	1	33	50	7.1818
(((((((....).))))	chr17:27047493-27047697(+)$1	1	102	119	7.0232
.((((((....))))))	chr1:11986199-11986445(-)$1	1	154	171	7.7090
(((((((...)))))))	chr6:43100175-43100431(+)$1	1	161	178	6.2594
.(((.(((...))).))	chr21:46915235-46915447(+)$1	1	30	47	6.0330
(((((((....).))))	chr17:27047497-27047725(+)$1	1	98	115	7.0232
(((..((....))..))	chr9:116999166-116999409(+)$1	1	98	115	7.3644
)((((((....))))))	chr9:117008045-117008260(+)$1	1	104	121	7.7326
(..((((....)))).)	chr9:116997816-116998032(+)$1	1	180	197	6.8736
.((((.(....).))))	chr16:2164068-2164313(-)$1	1	205	222	6.9447
(..((((....)))).)	chr9:116997787-116998016(+)$1	1	209	226	6.8736
((((.((....)).)))	chr9:117027267-117027490(+)$1	1	93	110	7.3748
(((((((....)).)))	chr6:119670186-119670424(-)$1	1	121	138	7.7855
(((((((....))..))	chr20:60889758-60889985(-)$1	1	29	46	8.1883
((...((....))...)	chr9:96009765-96010121(+)$1	1	80	97	7.7647
(((((((....))))))	chr16:2802588-2802878(+)$1	1	25	42	8.7284
)((((((....))))))	chr2:11484516-11484760(-)$1	1	96	113	7.6452
..(((((....))).))	chr9:116840348-116840591(-)$1	1	91	108	7.2343
(((((((....))))))	chr11:67810657-67810935(+)$1	1	220	237	8.7284
.((((((....))))))	chr20:60911307-60911584(-)$1	1	6	23	6.5796
(((.(((....))).))	chr9:117032907-117033160(+)$1	1	1	18	8.2284
(((((((......))))	chr17:76968194-76968440(-)$1	1	12	29	6.0082
(.(((.(....).))).	chr11:1774751-1774973(-)$1	1	157	174	8.1208
((..(((....))))))	chr17:79804207-79804428(-)$1	1	141	158	8.3645
(((.(((....)).).)	chr16:89839650-89839893(-)$1	1	53	70	7.7143
(((.(((....))))))	chr17:79812989-79813207(-)$1	1	165	182	8.5015
(((((.(....).))))	chr17:76968289-76968551(-)$1	1	1	18	7.8399
(((((((....))))))	chr9:117044668-117044912(+)$1	1	152	169	8.3748
(((.(((....)))..)	chr8:11705103-11705347(-)$1	1	220	237	7.9613
(((((((....))).))	chr2:220435942-220436229(-)$1	1	141	158	8.3314
(((..((....)).)))	chr3:50095247-50095527(+)$1	1	233	250	8.0249
.((((((....))))))	chr17:79918551-79918888(-)$1	1	287	304	7.7237
.((((((....))))))	chr9:117073226-117073444(+)$1	1	77	94	7.5735
(((.(.(....).).))	chr17:80193757-80193980(+)$1	1	136	153	8.1891
(((((((....)).)))	chr6:167369764-167370029(-)$1	1	122	139	7.7855
(((((((....))))))	chr17:64224097-64224346(-)$1	1	146	163	8.7284

#PSSM
g : 0.23	e : 0.16	d : 0.16	f : 0.10	c : 0.10	h : 0.06	! : 0.06	i : 0.04	[ : 0.02	$ : 0.02	: : 0.02	" : 0.02	
g : 0.21	f : 0.21	d : 0.16	e : 0.14	h : 0.06	[ : 0.06	! : 0.06	i : 0.04	c : 0.04	
g : 0.21	e : 0.18	f : 0.18	d : 0.16	h : 0.06	c : 0.06	! : 0.06	i : 0.04	" : 0.02	b : 0.02	
g : 0.21	[ : 0.16	f : 0.16	d : 0.14	e : 0.12	! : 0.08	i : 0.04	c : 0.04	" : 0.02	b : 0.02	
g : 0.21	c : 0.21	f : 0.12	e : 0.10	d : 0.10	[ : 0.08	! : 0.06	i : 0.04	a : 0.04	" : 0.02	
c : 0.23	g : 0.19	b : 0.19	f : 0.12	d : 0.08	[ : 0.08	i : 0.04	e : 0.04	
c : 0.23	g : 0.19	b : 0.19	a : 0.12	f : 0.12	i : 0.04	e : 0.04	d : 0.04	
m : 0.88	c : 0.04	o : 0.04	l : 0.04	
m : 0.88	l : 0.08	o : 0.04	
m : 0.88	l : 0.08	o : 0.04	
m : 0.88	l : 0.04	o : 0.04	g : 0.04	
c : 0.23	b : 0.19	g : 0.16	a : 0.12	f : 0.12	o : 0.04	i : 0.04	e : 0.04	d : 0.04	
c : 0.23	b : 0.19	g : 0.16	] : 0.12	f : 0.12	o : 0.04	i : 0.04	e : 0.04	d : 0.04	
c : 0.25	g : 0.19	] : 0.12	f : 0.12	d : 0.10	2 : 0.06	e : 0.06	i : 0.04	3 : 0.02	a : 0.02	
g : 0.19	e : 0.16	d : 0.14	f : 0.14	2 : 0.10	] : 0.10	i : 0.04	c : 0.04	h : 0.02	4 : 0.02	3 : 0.02	a : 0.02	
g : 0.21	f : 0.18	e : 0.16	d : 0.12	h : 0.06	c : 0.06	] : 0.06	i : 0.04	2 : 0.04	4 : 0.02	3 : 0.02	b : 0.02	
g : 0.21	f : 0.19	d : 0.16	e : 0.14	c : 0.08	h : 0.06	] : 0.06	i : 0.04	4 : 0.02	b : 0.02	

#score	381.57671880943815
#seq	50
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_UTR_m2_run2.txt

#BEAR
ccc[eeeeeooooooeeeee]c	chr2:71213911-71214221(-)$1	310	45	67	11.0340
fffffddddoooooodddd22f	chr4:1386705-1386966(+)$1	261	141	163	10.3290
eeeeeddddoooooodddd]ee	chr6:155585307-155585579(-)$1	272	183	205	10.3208
fffff!!bboooooobb4444f	chr2:85547741-85548008(-)$1	267	148	170	10.9383
h"""eeeeeooooooeeeee22	chr2:75884294-75884602(+)$1	308	91	113	10.5693
cccbb[cccrrrrrrrrrccc]	chr3:187897302-187897548(+)$1	246	137	159	7.0111
gggggggrrrrrrrrrgggggg	chr11:66406180-66406433(+)$1	253	96	118	7.8485
eee!!ddddoooooodddd22e	chr2:85548214-85548444(-)$1	230	37	59	10.5798
:ccc[ddddoooooodddd]cc	chr19:50432035-50432302(-)$1	267	233	255	9.9964
$$$$eeeeeooooooeeeee33	chr2:71214961-71215314(-)$1	353	12	34	10.3286
e[ccc[cccoooooocccccc]	chr4:1386200-1386460(+)$1	260	100	122	12.2283
a[ccc[cccooooooccc22cc	chr16:58054423-58054813(+)$1	390	300	322	12.1581
ggggggg[aooooooagggggg	chr2:85547328-85547579(-)$1	251	85	107	12.0917
eee[a[cccooooooccc]a]e	chr3:99569629-99569892(+)$1	263	193	215	11.8580
gggggg[bboooooobb]gggg	chr6:3259138-3259404(+)$1	266	235	257	11.6801
e[ccc[eeeeeooooooeeeee	chr6:7282393-7282718(-)$1	325	74	96	8.6406
fffff!!bboooooobb22fff	chr16:70191101-70191358(+)$1	257	165	187	10.6178
:dddd!!bboooooobb]dddd	chr19:54377776-54378028(+)$1	252	188	210	9.2021
c[gggggggooooooggggggg	chr10:124147172-124147440(+)$1	268	169	191	12.0249
dddd!!cccooooooccc]ddd	chr22:20067965-20068231(+)$1	266	68	90	10.8448
$$ccc!!bboooooobb]ccce	chr1:91966342-91966582(+)$1	240	169	191	11.2320
gggggggrrrrrrrrrgggggg	chr1:91966309-91966542(+)$1	233	191	213	7.8485
cc!!eeeeeooooooeeeee22	chr6:146226214-146226479(-)$1	265	4	26	10.7021
!!gggggggooooooggggggg	chr11:8634535-8634840(-)$1	305	41	63	12.1868
ggggggg[aooooooagggggg	chr2:85547387-85547685(-)$1	298	191	213	12.0917
hhhhhddddoooooodddd:ff	chr19:54645273-54645522(+)$1	249	163	185	8.9699
ee####cccooooooccc22ee	chr2:169721722-169722064(-)$1	342	222	244	11.1110
iiiii[cccnnnnnccc22iii	chr4:1385559-1385789(+)$1	230	85	107	8.1490
!!ccc[ccclllccc]ccc22g	chr4:1386081-1386329(+)$1	248	123	145	7.9032
eeeee[bboooooobb22eeee	chr9:71397809-71398106(+)$1	297	230	252	8.8084
cccffffffooooooffffff:	chr2:240124-240375(-)$1	251	131	153	9.3237
""ccc[ddddoooooodddd]c	chr4:1386520-1386789(+)$1	269	214	236	10.4292
fffff!!bboooooobb22fff	chr16:70191185-70191414(+)$1	229	81	103	10.6178
hhhhh!!bboooooobb4444h	chr1:91967099-91967373(+)$1	274	132	154	10.4834
""ccc[ddddoooooodddd]c	chr4:1386589-1386824(+)$1	235	145	167	10.4292
===========mmmm=======	chr2:71213848-71214093(-)$1	245	95	117	7.9810
=====[ccclllccc]======	chr7:100164437-100164687(+)$1	250	40	62	8.2719
iiiiiiiiiooooooiiiiiii	chr1:113669257-113669621(+)$1	364	331	353	12.0377
!ffffff[aooooooa]fffff	chr20:34820053-34820322(+)$1	269	190	212	10.6566
c"""eeeeeooooooeeeeecc	chr2:85547858-85548119(-)$1	261	182	204	10.9056
ffccc[cccooooooccc]ccc	chr21:44269595-44269873(-)$1	278	49	71	11.9297
"""ffffffooooooffffff3	chr1:91966560-91966837(+)$1	277	128	150	10.6021
=========oooooo=======	chr19:45912459-45912728(-)$1	269	180	202	12.5608
============lll=======	chr16:23584998-23585248(+)$1	250	131	153	8.8114
gggggggccclllccc]ggggg	chr4:1385457-1385724(+)$1	267	160	182	7.8227
$$ccc[cccnnnnnccc]ccc7	chr2:85547637-85547851(-)$1	214	140	162	7.1228
dddd[ddddoooooodddd22d	chr2:105964366-105964692(+)$1	326	200	222	9.9665
!!gggggggooooooggggggg	chr20:36146435-36146704(-)$1	269	40	62	12.1868
eeeee[bboooooobb]eeeee	chr2:85546845-85547094(-)$1	249	82	104	9.1432

#otherMatches

#Seq PSSM
gggcuugcuaaauccagcagac	chr2:71213911-71214221(-)$1	310	45	67	11.0340
cagcuacguguguugaugugga	chr4:1386705-1386966(+)$1	261	141	163	10.3290
GUGAUGUCCUAAAGUGGACUGU	chr6:155585307-155585579(-)$1	272	183	205	10.3208
CAAAGCCAGGCCUCUCUAUUCC	chr2:85547741-85548008(-)$1	267	148	170	10.9383
ugucUUUAGGAUUAUCUGAAUG	chr2:75884294-75884602(+)$1	308	91	113	10.5693
GAGCUUCAGCAAGCCUCUCUGC	chr3:187897302-187897548(+)$1	246	137	159	7.0111
CACUCCCUUGGGCUUCGGGGGU	chr11:66406180-66406433(+)$1	253	96	118	7.8485
AGGUAAGGAAUGAACUCCUACC	chr2:85548214-85548444(-)$1	230	37	59	10.5798
UGCUUGCAGAAUUUCCUGCCAG	chr19:50432035-50432302(-)$1	267	233	255	9.9964
GAUUUCUGUCCAAGUGCAGAUU	chr2:71214961-71215314(-)$1	353	12	34	10.3286
uuuuccuucucuucugaagaau	chr4:1386200-1386460(+)$1	260	100	122	12.2283
CUGUUGUGGUCCUUCCCAGAAA	chr16:58054423-58054813(+)$1	390	300	322	12.1581
UGGAUUUUGUUUUUUCAGAUCC	chr2:85547328-85547579(-)$1	251	85	107	12.0917
UCAGCUCCUCUUUCAGGGUGGU	chr3:99569629-99569892(+)$1	263	193	215	11.8580
UGGGUGGGGGCCACGCCGCACC	chr6:3259138-3259404(+)$1	266	235	257	11.6801
AGUCUUGAGAGGCUUUUUUCUC	chr6:7282393-7282718(-)$1	325	74	96	8.6406
GGCAGCUCGUUCUCCUGUUCUG	chr16:70191101-70191358(+)$1	257	165	187	10.6178
CUGUGUUGUUUUGUUGCCCACA	chr19:54377776-54378028(+)$1	252	188	210	9.2021
gcagucugaaggcagucagauu	chr10:124147172-124147440(+)$1	268	169	191	12.0249
ggccUUUGUGAGGCAACAUGGC	chr22:20067965-20068231(+)$1	266	68	90	10.8448
UUCCGACGGUUUGUUCCAUGGC	chr1:91966342-91966582(+)$1	240	169	191	11.2320
AAACCGUGAGUUUCCGACGGUU	chr1:91966309-91966542(+)$1	233	191	213	7.8485
CUUAGGAGCUAUGCUGCUUCCC	chr6:146226214-146226479(-)$1	265	4	26	10.7021
CUCUCAGCCCACACAGGCUGAG	chr11:8634535-8634840(-)$1	305	41	63	12.1868
UGGAUUUUGUUUUUUCAGAUCC	chr2:85547387-85547685(-)$1	298	191	213	12.0917
UUUACAGUAAGUGACUACUCCA	chr19:54645273-54645522(+)$1	249	163	185	8.9699
CAUCUAagucccacugcuguug	chr2:169721722-169722064(-)$1	342	222	244	11.1110
gggaucauguuuuucaucuguc	chr4:1385559-1385789(+)$1	230	85	107	8.1490
uguggugucuuggacuucagcc	chr4:1386081-1386329(+)$1	248	123	145	7.9032
uuuuucgcccucuugcuugaaa	chr9:71397809-71398106(+)$1	297	230	252	8.8084
ggcuugccucugucagggugga	chr2:240124-240375(-)$1	251	131	153	9.3237
guguggugaguaugccuucagc	chr4:1386520-1386789(+)$1	269	214	236	10.4292
GGCAGCUCGUUCUCCUGUUCUG	chr16:70191185-70191414(+)$1	229	81	103	10.6178
UGUAACCCCUUAGCUGGCAUUU	chr1:91967099-91967373(+)$1	274	132	154	10.4834
guguggugaguaugccuucagc	chr4:1386589-1386824(+)$1	235	145	167	10.4292
caguagggucuuucaggguucu	chr2:71213848-71214093(-)$1	245	95	117	7.9810
CUUUCUGCUUAGAGCCGGAGGG	chr7:100164437-100164687(+)$1	250	40	62	8.2719
ACAGCUGGAAAGUUGUCUGGCU	chr1:113669257-113669621(+)$1	364	331	353	12.0377
ucugggugaccauccuggcuca	chr20:34820053-34820322(+)$1	269	190	212	10.6566
AAAUGGAAAUUCCCCUUUCUUG	chr2:85547858-85548119(-)$1	261	182	204	10.9056
GCUGCAUCUUCCUCUAGGAGCA	chr21:44269595-44269873(-)$1	278	49	71	11.9297
GGAAGCCGGUCCUUCCCGGCUG	chr1:91966560-91966837(+)$1	277	128	150	10.6021
AGUGGCUGAAUUGGCUCAGUCA	chr19:45912459-45912728(-)$1	269	180	202	12.5608
CCUUUCUUUGCCAGGGGCAGAG	chr16:23584998-23585248(+)$1	250	131	153	8.8114
guguguuucuuguagacagcac	chr4:1385457-1385724(+)$1	267	160	182	7.8227
UUGAAAGGAAUUUCUCUCUUCU	chr2:85547637-85547851(-)$1	214	140	162	7.1228
GGUUUGCAAGUCAUAUUGCUUG	chr2:105964366-105964692(+)$1	326	200	222	9.9665
GAAGCAACAGAUAGAUGUUGCU	chr20:36146435-36146704(-)$1	269	40	62	12.1868
GGAUCUGAUGUCUUUCUGGUCU	chr2:85546845-85547094(-)$1	249	82	104	9.1432

#DB
(((.(((((......))))).)	chr2:71213911-71214221(-)$1	1	45	67	11.0340
(((((((((......))))..)	chr4:1386705-1386966(+)$1	1	141	163	10.3290
(((((((((......)))).))	chr6:155585307-155585579(-)$1	1	183	205	10.3208
(((((..((......))....)	chr2:85547741-85548008(-)$1	1	148	170	10.9383
(...(((((......)))))..	chr2:75884294-75884602(+)$1	1	91	113	10.5693
(((((.(((.........))).	chr3:187897302-187897548(+)$1	1	137	159	7.0111
(((((((.........))))))	chr11:66406180-66406433(+)$1	1	96	118	7.8485
(((..((((......))))..)	chr2:85548214-85548444(-)$1	1	37	59	10.5798
.(((.((((......)))).))	chr19:50432035-50432302(-)$1	1	233	255	9.9964
....(((((......)))))..	chr2:71214961-71215314(-)$1	1	12	34	10.3286
(.(((.(((......)))))).	chr4:1386200-1386460(+)$1	1	100	122	12.2283
(.(((.(((......)))..))	chr16:58054423-58054813(+)$1	1	300	322	12.1581
(((((((.(......)))))))	chr2:85547328-85547579(-)$1	1	85	107	12.0917
(((.(.(((......))).).)	chr3:99569629-99569892(+)$1	1	193	215	11.8580
((((((.((......)).))))	chr6:3259138-3259404(+)$1	1	235	257	11.6801
(.(((.(((((......)))))	chr6:7282393-7282718(-)$1	1	74	96	8.6406
(((((..((......))..)))	chr16:70191101-70191358(+)$1	1	165	187	10.6178
.((((..((......)).))))	chr19:54377776-54378028(+)$1	1	188	210	9.2021
(.(((((((......)))))))	chr10:124147172-124147440(+)$1	1	169	191	12.0249
((((..(((......))).)))	chr22:20067965-20068231(+)$1	1	68	90	10.8448
..(((..((......)).))))	chr1:91966342-91966582(+)$1	1	169	191	11.2320
(((((((.........))))))	chr1:91966309-91966542(+)$1	1	191	213	7.8485
((..(((((......)))))..	chr6:146226214-146226479(-)$1	1	4	26	10.7021
..(((((((......)))))))	chr11:8634535-8634840(-)$1	1	41	63	12.1868
(((((((.(......)))))))	chr2:85547387-85547685(-)$1	1	191	213	12.0917
)))))((((......)))).((	chr19:54645273-54645522(+)$1	1	163	185	8.9699
((....(((......)))..))	chr2:169721722-169722064(-)$1	1	222	244	11.1110
(((((.(((.....)))..)))	chr4:1385559-1385789(+)$1	1	85	107	8.1490
..(((.(((...))).)))..)	chr4:1386081-1386329(+)$1	1	123	145	7.9032
(((((.((......))..))))	chr9:71397809-71398106(+)$1	1	230	252	8.8084
)))((((((......)))))).	chr2:240124-240375(-)$1	1	131	153	9.3237
..(((.((((......)))).)	chr4:1386520-1386789(+)$1	1	214	236	10.4292
(((((..((......))..)))	chr16:70191185-70191414(+)$1	1	81	103	10.6178
(((((..((......))....)	chr1:91967099-91967373(+)$1	1	132	154	10.4834
..(((.((((......)))).)	chr4:1386589-1386824(+)$1	1	145	167	10.4292
(((((((((((....)))))))	chr2:71213848-71214093(-)$1	1	95	117	7.9810
(((((.(((...))).))))))	chr7:100164437-100164687(+)$1	1	40	62	8.2719
(((((((((......)))))))	chr1:113669257-113669621(+)$1	1	331	353	12.0377
.((((((.(......).)))))	chr20:34820053-34820322(+)$1	1	190	212	10.6566
(...(((((......)))))))	chr2:85547858-85548119(-)$1	1	182	204	10.9056
(((((.(((......))).)))	chr21:44269595-44269873(-)$1	1	49	71	11.9297
...((((((......)))))).	chr1:91966560-91966837(+)$1	1	128	150	10.6021
(((((((((......)))))))	chr19:45912459-45912728(-)$1	1	180	202	12.5608
((((((((((((...)))))))	chr16:23584998-23585248(+)$1	1	131	153	8.8114
((((((((((...))).)))))	chr4:1385457-1385724(+)$1	1	160	182	7.8227
..(((.(((.....))).))).	chr2:85547637-85547851(-)$1	1	140	162	7.1228
((((.((((......))))..)	chr2:105964366-105964692(+)$1	1	200	222	9.9665
..(((((((......)))))))	chr20:36146435-36146704(-)$1	1	40	62	12.1868
(((((.((......)).)))))	chr2:85546845-85547094(-)$1	1	82	104	9.1432

#PSSM
e : 0.16	c : 0.12	g : 0.12	f : 0.10	! : 0.08	= : 0.08	h : 0.06	$ : 0.06	" : 0.06	: : 0.04	d : 0.04	i : 0.04	a : 0.02	
f : 0.12	e : 0.12	g : 0.12	c : 0.10	" : 0.10	[ : 0.08	= : 0.08	$ : 0.06	d : 0.06	! : 0.06	h : 0.04	i : 0.04	
c : 0.26	g : 0.18	f : 0.10	e : 0.10	= : 0.08	" : 0.06	d : 0.06	h : 0.04	i : 0.04	$ : 0.02	! : 0.02	# : 0.02	
c : 0.20	g : 0.18	f : 0.14	= : 0.08	e : 0.06	d : 0.06	[ : 0.04	" : 0.04	! : 0.04	h : 0.04	i : 0.04	b : 0.02	$ : 0.02	# : 0.02	
g : 0.18	c : 0.18	e : 0.16	f : 0.14	= : 0.08	! : 0.04	[ : 0.04	h : 0.04	i : 0.04	b : 0.02	a : 0.02	d : 0.02	# : 0.02	
[ : 0.28	g : 0.18	! : 0.14	d : 0.12	e : 0.10	f : 0.06	= : 0.06	# : 0.02	i : 0.02	
c : 0.22	d : 0.16	g : 0.16	e : 0.12	! : 0.12	f : 0.06	= : 0.06	b : 0.04	[ : 0.02	i : 0.02	
c : 0.24	b : 0.18	d : 0.16	e : 0.12	[ : 0.06	g : 0.06	= : 0.06	r : 0.04	f : 0.04	i : 0.02	
c : 0.24	d : 0.16	b : 0.14	e : 0.12	a : 0.06	g : 0.06	= : 0.06	r : 0.04	o : 0.04	f : 0.04	i : 0.02	
o : 0.73	r : 0.06	n : 0.04	l : 0.04	d : 0.04	= : 0.04	e : 0.02	c : 0.02	
o : 0.77	r : 0.06	l : 0.06	n : 0.04	= : 0.04	e : 0.02	
o : 0.79	r : 0.06	l : 0.06	n : 0.04	m : 0.02	= : 0.02	
o : 0.79	r : 0.06	n : 0.04	c : 0.04	l : 0.04	m : 0.02	
o : 0.79	r : 0.06	c : 0.06	n : 0.04	m : 0.02	l : 0.02	
o : 0.75	c : 0.10	r : 0.06	b : 0.04	m : 0.02	l : 0.02	
b : 0.18	c : 0.18	d : 0.12	e : 0.10	r : 0.06	a : 0.06	o : 0.06	g : 0.06	= : 0.06	] : 0.04	f : 0.04	i : 0.02	
c : 0.18	d : 0.16	b : 0.14	g : 0.14	e : 0.10	= : 0.08	] : 0.06	f : 0.04	r : 0.02	o : 0.02	2 : 0.02	i : 0.02	
d : 0.16	g : 0.16	e : 0.14	c : 0.14	] : 0.08	2 : 0.08	= : 0.08	f : 0.06	4 : 0.04	r : 0.02	i : 0.02	
d : 0.18	g : 0.18	e : 0.16	c : 0.10	2 : 0.10	= : 0.08	] : 0.06	f : 0.06	4 : 0.04	i : 0.02	
g : 0.18	e : 0.16	2 : 0.12	c : 0.10	f : 0.10	d : 0.08	= : 0.08	] : 0.04	4 : 0.04	i : 0.04	a : 0.02	: : 0.02	
g : 0.18	c : 0.16	2 : 0.12	f : 0.12	e : 0.10	] : 0.08	= : 0.08	4 : 0.04	d : 0.04	i : 0.04	3 : 0.02	
g : 0.20	e : 0.16	c : 0.14	f : 0.12	= : 0.08	d : 0.06	2 : 0.04	] : 0.04	3 : 0.04	i : 0.04	: : 0.02	h : 0.02	7 : 0.02	

#score	500.58922430957773
#seq	49
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_transcript_m1_run1.txt

#BEAR
"iiiiiiiiicccbbrrrrrrrrrbb]ccc]iiiiiiii	chr12:110765516-110765750(+)$1	234	114	153	11.7785
d[ffffff!!a!!ddddoooooodddd22a22ffffff]	chr19:11120984-11121283(+)$1	299	204	243	13.7356
=========[a"""cccooooooccc333a=========	chr17:45747069-45747334(+)$1	265	179	218	19.6809
cc[eeeee[abb!!cccooooooccc]bb]a]eeeee]c	chr19:5131185-5131449(+)$1	264	187	226	15.5513
+ggggggg[ccc[a[bboooooobb]a]ccc333ggggg	chr1:160283679-160283889(-)$1	210	108	147	14.7873
ffffff[a[agggggggooooooggggggg]aaffffff	chr1:894208-894465(-)$1	257	164	203	13.1741
ggg####ggggggg[bboooooobbggggggg4444ggg	chr17:78367044-78367260(+)$1	216	9	48	14.3554
bbggggggg!!bb[cccoooooocccbb]ggggggg]bb	chr10:105726957-105727370(+)$1	413	89	128	15.5173
eeeeeccc!!a[a[ddddmmmmdddd]a]a22ccc4444	chr2:54856631-54856913(+)$1	282	143	182	12.0996
ggggg[ccc[ccc[cccmmmmccc]ccc22ccc]ggggg	chr6:31602184-31602406(+)$1	222	168	207	13.7861
##ggggggg[cccssssssssssccc]ggggggga]eee	chr12:49521705-49521974(-)$1	269	214	253	11.6270
cc[ccc[ccc[bb[cccnnnnnccc]bb]ccc]ccc]cc	chr19:59059566-59059789(+)$1	223	106	145	13.5233
[cccdddd!!ccc[cccooooooccc]ccc]dddd4444	chr17:8417004-8417245(-)$1	241	67	106	16.2591
d"""dddd[ccc!!cccmmmmccc]ccc]dddd]dddd2	chr8:48848306-48848541(-)$1	235	176	215	12.3921
!!dddd!!cccccc[cccnnnnnccc22ccc]ccc22dd	chr1:109795543-109795859(+)$1	316	102	141	13.2754
[ffffff[dddd!!cccnnnnnccc4444ddddffffff	chr22:24487550-24487857(+)$1	307	224	263	13.3279
========!!ccc!!annnnna22ccc22==========	chr7:128490878-128491095(+)$1	217	141	180	14.2124
[a[ffffff[bb"""aooooooa333bb]ffffff]a]b	chrX:135579801-135580059(+)$1	258	26	65	13.8510
c[a[eeeee!!a[ddddoooooodddd]aeeeeea]ccc	chr21:33725036-33725293(-)$1	257	9	48	13.8815
eeeeccc####ffffffooooooffffff]ccc]eeeee	chr1:19477071-19477333(-)$1	262	131	170	12.6518
###dddd[ccc[bb[ccclllcccbb]ccc]dddd4444	chr3:47890609-47890859(+)$1	250	181	220	12.4017
a[dddd!!ccc"""ccclllccc]ccc22ddddabbfff	chr2:11484161-11484461(-)$1	300	60	99	13.0080
ffffff[eeeee[a[bboooooobba]eeeee]ffffff	chr22:23610494-23610771(+)$1	277	9	48	12.8185
=[a!!bbaccc####cccnnnnnccc22ccc]a]bb22a	chr1:16053665-16053915(+)$1	250	69	108	13.7327
eeee!!ggggggg!!ddddllldddd22ggggggg22ee	chr12:56565384-56565656(-)$1	272	102	141	12.5563
accc[cccgggggggddddllldddd4444ggggggg]c	chr7:128486698-128486908(+)$1	210	106	145	12.2150
a!!ddddccc[bb[cccmmmmcccbb333ccc]dddd22	chr3:184043167-184043426(+)$1	259	78	117	12.4876
gg!!eeeee[ccc[cccooooooccc55555ccceeeee	chrX:53596495-53596725(-)$1	230	111	150	13.1680
c[abb!!dddd####cccmmmmccc4444dddd22bb33	chr5:154190735-154190981(+)$1	246	40	79	12.5315
iiiiiii[a!!cccssssssssssccc22a]iiiiiiii	chr17:7401309-7401554(+)$1	245	48	87	11.7822
$$$$ggggggg"""ccclllccc333gggggggddddee	chr11:118460986-118461238(+)$1	252	149	188	12.7360
iiiii!!cccbb[ddddnnnnnddddbb333ccc22iii	chr14:102471358-102471602(+)$1	244	18	57	12.2068
cc[a!!ccc$$$$$ccclllcccccc333a]ccc]ccc:	chr10:75863477-75863690(+)$1	213	113	152	13.6209
"""eeeeedddd!!cccooooooccc22dddd22eeeee	chr11:46811617-46811836(-)$1	219	148	187	15.6976
ee"""ggggggg!!cccooooooccc22ggggggg0000	chr14:23564178-23564430(-)$1	252	38	77	15.7567
!!ggggggg[ccc[bboooooobb]cccggggggg]ccc	chr8:144940374-144940626(-)$1	252	210	249	14.9741
c!!eeeee[dddd[cccooooooccc]dddd22eeeee2	chr3:184020437-184020675(+)$1	238	101	140	14.6591
ggggccc[bb!!a[cccooooooccc]a22bb]ccc333	chr11:62293795-62294040(-)$1	245	185	224	16.3528
eeeee!!dddd####bbnnnnnbb4444dddd22eeeee	chr17:7403881-7404125(+)$1	244	45	84	12.1509
ggg!!ggggggg[cccrrrrrrrrrccc]ggggggg]gg	chr5:140958070-140958290(-)$1	220	14	53	13.2540
eeeee[a[eeeee!!cccnnnnnccc]eeeeea]eeeee	chrX:41077619-41077872(+)$1	253	39	78	12.5332
ggggggeeeee"""cccmmmmccc333eeeee]gggggg	chr8:48872508-48872734(-)$1	226	128	167	13.1813
dd!!ffffff"""ccc[ccclllccc4444ccc333fff	chrX:53579692-53579946(-)$1	254	145	184	13.2145
=========[bb$$$$$ccclllcccbb]==========	chr20:34638295-34638574(-)$1	279	130	169	12.9242
::ccc"""ffffffcccooooooccc333ffffff4444	chr2:54785840-54786092(+)$1	252	145	184	13.7508
eeee[bb[ccc[ccc[aooooooa]ccc]ccc22bb]ee	chr9:139733306-139733567(+)$1	261	86	125	14.1737
cccggggggg"""ddddooooooddddgggggggdddd[	chr6:31749374-31749586(-)$1	212	103	142	13.9170
iiiii####ccc!!cccmmmmccc]ccc22iiiiiiiii	chr12:120587625-120587830(-)$1	205	79	118	13.9715
eeeeedddd"""a[cccooooooccc]a333dddd22ee	chr1:12368522-12368759(+)$1	237	130	169	16.4370
"""ccca[dddd[acccooooooccc]a]dddd]a]ccc	chr12:120590985-120591227(-)$1	242	114	153	16.4018
f[bb!!ccc[bb"""bboooooobb22bb]ccc22bbff	chr11:65824673-65824937(+)$1	264	156	195	13.2730
eeeeeeeee!!bb[bboooooobb]bb22eeeee333ee	chr17:27014020-27014274(+)$1	254	212	251	13.1573
eeeebb[ggggggg[cccnnnnnccc]ggggggg22bb]	chr1:12353571-12353810(+)$1	239	185	224	12.4520

#otherMatches

#Seq PSSM
CUGGCUGUAGCAGCCAUUCCUGAAGGUCUGCCUGCAGUC	chr12:110765516-110765750(+)$1	234	114	153	11.7785
UGUCCUCAAACAGUACCAGGUGAGGUAGGGGGUGGGGAG	chr19:11120984-11121283(+)$1	299	204	243	13.7356
UUGCUGGUGAGAAAAGGAGCUUGCCUGCGCCACUGGCAA	chr17:45747069-45747334(+)$1	265	179	218	19.6809
GCCGGGCAAGGCAGCCUUCAACCAGGAGCACGUGUCCUG	chr19:5131185-5131449(+)$1	264	187	226	15.5513
CGGUAAGGUAGUCCUCAGUGUUGUGUGAACUUUCUCUUA	chr1:160283679-160283889(-)$1	210	108	147	14.7873
GGGACAUGCGUGAGCAGAACCUCUUGCUCGUCCUGUCCC	chr1:894208-894465(-)$1	257	164	203	13.1741
uacacacgugagccacACAGUGCUGGGCUUACACACGUG	chr17:78367044-78367260(+)$1	216	9	48	14.3554
CGAGGCGGGAGGGCUCGGCUUCUCGACUGCCCGCCUCCG	chr10:105726957-105727370(+)$1	413	89	128	15.5173
CAGAGCUGACGCGGCUGCGGAAGCAGGCACUCCAGGACA	chr2:54856631-54856913(+)$1	282	143	182	12.0996
GUGUGUCUGAGCUGGGACUUUUUUGAGCACUGGUCAUAC	chr6:31602184-31602406(+)$1	222	168	207	13.7861
AAGAAGGAGAGGAAUACUAAUUAUCCAUUCCUUUUGGCC	chr12:49521705-49521974(-)$1	269	214	253	11.6270
CUGCACCGGGCCCUCAAGAUGAUUGUGGAUCCCGUGGAG	chr19:59059566-59059789(+)$1	223	106	145	13.5233
UUAAAGGUCUUGCAGCGGAACUGUGCCGCGUACCUGAAA	chr17:8417004-8417245(-)$1	241	67	106	16.2591
CAGAGCCAUAGUGAAGGUGUUCCUAGCUUUGGCAGCAAA	chr8:48848306-48848541(-)$1	235	176	215	12.3921
UAGACUUAGACUACGAGGACCGGCCUGAGUACGUCCUGG	chr1:109795543-109795859(+)$1	316	102	141	13.2754
AGCUGGCCAUGGAGGCCCUGGAGGUGACACCAUGCUGGC	chr22:24487550-24487857(+)$1	307	224	263	13.3279
CUGGGGCUUGGGUGAGAGGAGCAGGCCGUAGCUUCAGUC	chr7:128490878-128491095(+)$1	217	141	180	14.2124
GAGCUAGGUAGGAAACAUGAGCGGCACCAACUUGGAUGG	chrX:135579801-135580059(+)$1	258	26	65	13.8510
UGGUGUUGGUAGGUCACAGAAGGGUGGGCCCAGCCAGCC	chr21:33725036-33725293(-)$1	257	9	48	13.8815
UGAUGAGCCCCCAGAAGAAUUCCCUUCUGCCUCUGUCAG	chr1:19477071-19477333(-)$1	262	131	170	12.6518
GCUGGUGAAGGGCGUGCUGAUGGCCGGCCUCUACCCCAA	chr3:47890609-47890859(+)$1	250	181	220	12.4017
GACCCGAAGCCGGAGCUAGAGGCAGGCGGUGGGCCCGGG	chr2:11484161-11484461(-)$1	300	60	99	13.0080
UUUCUGCAGAGCUGUGCACGGGAGCCUGCUCUUCAGAAA	chr22:23610494-23610771(+)$1	277	9	48	12.8185
GAGCCGGGCCUGCUGAUCCCUGAGAUGAAGGACACCUCC	chr1:16053665-16053915(+)$1	250	69	108	13.7327
UCAGUCGGGCAACCCUGUUAUGAGCACUGUUGCCUUCCU	chr12:56565384-56565656(-)$1	272	102	141	12.5563
GGGCACCGGGGGCCUUGGCCUAGCCAUCGAGGGUCCCUC	chr7:128486698-128486908(+)$1	210	106	145	12.2150
GACUGGCCCUCUGUCUCCACAGAGCAAUUGGGUGCCACG	chr3:184043167-184043426(+)$1	259	78	117	12.4876
GGCACUGGCUAUGGCUGAGAGUACAGAGAAACAUGCCAG	chrX:53596495-53596725(-)$1	230	111	150	13.1680
ugCCCUGAUUUCACUGACUUGUGUUCUACAGAUAUGGUU	chr5:154190735-154190981(+)$1	246	40	79	12.5315
UAGGAAGCAUUGAGUUCAUUGCACCUCUUUCCUUCCUAG	chr17:7401309-7401554(+)$1	245	48	87	11.7822
UGAUCAUGCUUAGGAUCUCAGAUGACAAGUAUGGCCGAA	chr11:118460986-118461238(+)$1	252	149	188	12.7360
AGGCCCAGCUUGUGGUUUUGUCAGCCCAGAUAGCCUGGU	chr14:102471358-102471602(+)$1	244	18	57	12.2068
CUCGUAUCUUACUUAGGAACCCUGGAAAUCAAGCUGCUU	chr10:75863477-75863690(+)$1	213	113	152	13.6209
AUACAGCUUCUUGACAGCAGUAACUGGAAAGAAAGGCUG	chr11:46811617-46811836(-)$1	219	148	187	15.6976
UCGAAGGGCGUUGGCGGAAAUUACCGAAGAUGCCCGAAG	chr14:23564178-23564430(-)$1	252	38	77	15.7567
AUCCGCCUGCUGGAGGCCCAGAUCGCCACGGGCGGCGUC	chr8:144940374-144940626(-)$1	252	210	249	14.9741
GGAGUAUGAGGACCUGACAGAGAUCAUGUCCAAUGUACA	chr3:184020437-184020675(+)$1	238	101	140	14.6591
CCCUGAUGUUAACAUUGAAGGACCAGAGGGAAAGUUGAA	chr11:62293795-62294040(-)$1	245	185	224	16.3528
ACUUCUGUCUGCCUUACUCUUUGUCUUACAGGGUGAAGU	chr17:7403881-7404125(+)$1	244	45	84	12.1509
GGACCUAAGAAUGCAUGUAAAGAAAAUGGAUUCUUGAUC	chr5:140958070-140958290(-)$1	220	14	53	13.2540
AAGAAUGUACGUUUUUGGUUUGCUCAUAACGUCCUUUUU	chrX:41077619-41077872(+)$1	253	39	78	12.5332
UGCCCUGGCCGGUCAUCAACUGAUCCGCGGCCUGGGGCA	chr8:48872508-48872734(-)$1	226	128	167	13.1813
AGUCAGCUAGAAGGCUCUCCUAUGGAUACAAGCAGCCUG	chrX:53579692-53579946(-)$1	254	145	184	13.2145
GCCUAGGGACGCAAGCAGGCUCGGCCGCCUCUUUAGGCC	chr20:34638295-34638574(-)$1	279	130	169	12.9242
ACUACAACCAGCUGGAAGGCAGAUUCAAGCAGCUGCAAG	chr2:54785840-54786092(+)$1	252	145	184	13.7508
UGGCAGGGUUCCAGGACGAUGUGGACCUCGAAGACCAGC	chr9:139733306-139733567(+)$1	261	86	125	14.1737
GGGCUGGCCCAACCAGGUGUGUUCCUGGGGCCGGGGCUU	chr6:31749374-31749586(-)$1	212	103	142	13.9170
GGGAUGGAAACCAGUAUGUGCGUGAGGUAAGUCCCCGGA	chr12:120587625-120587830(-)$1	205	79	118	13.9715
CCGAGCCUUGUAGGCUGAAAUUGCAGGUGGAAAGGAAUU	chr1:12368522-12368759(+)$1	237	130	169	16.4370
GAUGGGCUCUCUGGCCAAGCACCUGGACAAGAGUGACCC	chr12:120590985-120591227(-)$1	242	114	153	16.4018
GAGAUGAGAACAGAGAGGUGAGACUGAUGAUUUAUUCCU	chr11:65824673-65824937(+)$1	264	156	195	13.2730
ACCCCUUGCAGGUGAGUAGGAUUUGACAGGCAGGCUCGG	chr17:27014020-27014274(+)$1	254	212	251	13.1573
AGACGGUAGGUAGCCUGGGCCCUCCAAGCUGCUUUUCCA	chr1:12353571-12353810(+)$1	239	185	224	12.4520

#DB
.((((((((((((((.........)).))).))))))))	chr12:110765516-110765750(+)$1	1	114	153	11.7785
(.((((((..(..((((......))))..)..)))))).	chr19:11120984-11121283(+)$1	1	204	243	13.7356
(((((((((.(...(((......)))...))))))))))	chr17:45747069-45747334(+)$1	1	179	218	19.6809
((.(((((.(((..(((......))).)).).))))).)	chr19:5131185-5131449(+)$1	1	187	226	15.5513
.(((((((.(((.(.((......)).).)))...)))))	chr1:160283679-160283889(-)$1	1	108	147	14.7873
((((((.(.((((((((......))))))).))))))))	chr1:894208-894465(-)$1	1	164	203	13.1741
(((....(((((((.((......)))))))))....)))	chr17:78367044-78367260(+)$1	1	9	48	14.3554
(((((((((..((.(((......))))).))))))).))	chr10:105726957-105727370(+)$1	1	89	128	15.5173
((((((((..(.(.((((....)))).).)..)))....	chr2:54856631-54856913(+)$1	1	143	182	12.0996
(((((.(((.(((.(((....))).)))..))).)))))	chr6:31602184-31602406(+)$1	1	168	207	13.7861
..(((((((.(((..........))).)))))))).)))	chr12:49521705-49521974(-)$1	1	214	253	11.6270
((.(((.(((.((.(((.....))).)).))).))).))	chr19:59059566-59059789(+)$1	1	106	145	13.5233
.(((((((..(((.(((......))).))).))))....	chr17:8417004-8417245(-)$1	1	67	106	16.2591
(...((((.(((..(((....))).))).)))).)))).	chr8:48848306-48848541(-)$1	1	176	215	12.3921
..((((..((((((.(((.....)))..))).)))..))	chr1:109795543-109795859(+)$1	1	102	141	13.2754
.((((((.((((..(((.....)))....))))))))))	chr22:24487550-24487857(+)$1	1	224	263	13.3279
((((((((..(((..(.....)..)))..))))))))))	chr7:128490878-128491095(+)$1	1	141	180	14.2124
.(.((((((.((...(......)...)).)))))).).)	chrX:135579801-135580059(+)$1	1	26	65	13.8510
(.(.(((((..(.((((......)))).))))))).)))	chr21:33725036-33725293(-)$1	1	9	48	13.8815
(((((((....((((((......)))))).))).)))))	chr1:19477071-19477333(-)$1	1	131	170	12.6518
...((((.(((.((.(((...))))).))).))))....	chr3:47890609-47890859(+)$1	1	181	220	12.4017
(.((((..(((...(((...))).)))..))))))))))	chr2:11484161-11484461(-)$1	1	60	99	13.0080
((((((.(((((.(.((......))).))))).))))))	chr22:23610494-23610771(+)$1	1	9	48	12.8185
(.(..((((((....(((.....)))..))).).))..)	chr1:16053665-16053915(+)$1	1	69	108	13.7327
((((..(((((((..((((...))))..)))))))..))	chr12:56565384-56565656(-)$1	1	102	141	12.5563
)(((.((((((((((((((...))))....))))))).)	chr7:128486698-128486908(+)$1	1	106	145	12.2150
(..(((((((.((.(((....)))))...))).))))..	chr3:184043167-184043426(+)$1	1	78	117	12.4876
((..(((((.(((.(((......))).....))))))))	chrX:53596495-53596725(-)$1	1	111	150	13.1680
(.(((..((((....(((....)))....))))..))..	chr5:154190735-154190981(+)$1	1	40	79	12.5315
(((((((.(..(((..........)))..).))))))))	chr17:7401309-7401554(+)$1	1	48	87	11.7822
....(((((((...(((...)))...)))))))))))))	chr11:118460986-118461238(+)$1	1	149	188	12.7360
(((((..(((((.((((.....))))))...)))..)))	chr14:102471358-102471602(+)$1	1	18	57	12.2068
((.(..(((.....(((...))))))...).))).))).	chr10:75863477-75863690(+)$1	1	113	152	13.6209
...(((((((((..(((......)))..))))..)))))	chr11:46811617-46811836(-)$1	1	148	187	15.6976
((...(((((((..(((......)))..)))))))....	chr14:23564178-23564430(-)$1	1	38	77	15.7567
..(((((((.(((.((......)).)))))))))).)))	chr8:144940374-144940626(-)$1	1	210	249	14.9741
(..(((((.((((.(((......))).))))..))))).	chr3:184020437-184020675(+)$1	1	101	140	14.6591
(((((((.((..(.(((......))).)..)).)))...	chr11:62293795-62294040(-)$1	1	185	224	16.3528
(((((..((((....((.....))....))))..)))))	chr17:7403881-7404125(+)$1	1	45	84	12.1509
(((..(((((((.(((.........))).))))))).))	chr5:140958070-140958290(-)$1	1	14	53	13.2540
(((((.(.(((((..(((.....))).)))))).)))))	chrX:41077619-41077872(+)$1	1	39	78	12.5332
(((((((((((...(((....)))...))))).))))))	chr8:48872508-48872734(-)$1	1	128	167	13.1813
((..((((((...(((.(((...)))....)))...)))	chrX:53579692-53579946(-)$1	1	145	184	13.2145
(((((((((.((.....(((...))))).))))))))))	chr20:34638295-34638574(-)$1	1	130	169	12.9242
..(((...(((((((((......)))...))))))....	chr2:54785840-54786092(+)$1	1	145	184	13.7508
((((.((.(((.(((.(......).))).)))..)).))	chr9:139733306-139733567(+)$1	1	86	125	14.1737
)))(((((((...((((......)))))))))))((((.	chr6:31749374-31749586(-)$1	1	103	142	13.9170
(((((....(((..(((....))).)))..)))))))))	chr12:120587625-120587830(-)$1	1	79	118	13.9715
(((((((((...(.(((......))).)...))))..))	chr1:12368522-12368759(+)$1	1	130	169	16.4370
...((((.((((.((((......))).).)))).).)))	chr12:120590985-120591227(-)$1	1	114	153	16.4018
(.((..(((.((...((......))..)).)))..))))	chr11:65824673-65824937(+)$1	1	156	195	13.2730
(((((((((..((.((......)).))..)))))...))	chr17:27014020-27014274(+)$1	1	212	251	13.1573
((((((.(((((((.(((.....))).)))))))..)).	chr1:12353571-12353810(+)$1	1	185	224	12.4520

#PSSM
e : 0.18	c : 0.13	g : 0.11	= : 0.07	" : 0.05	d : 0.05	f : 0.05	[ : 0.05	a : 0.05	i : 0.05	# : 0.03	! : 0.03	+ : 0.01	b : 0.01	$ : 0.01	: : 0.01	
e : 0.18	g : 0.13	[ : 0.11	c : 0.11	i : 0.07	! : 0.07	= : 0.05	f : 0.05	" : 0.05	# : 0.03	b : 0.01	a : 0.01	$ : 0.01	d : 0.01	: : 0.01	
g : 0.16	e : 0.16	i : 0.07	f : 0.07	[ : 0.07	c : 0.07	" : 0.07	! : 0.07	= : 0.05	a : 0.05	d : 0.03	# : 0.01	$ : 0.01	b : 0.01	
e : 0.22	g : 0.15	f : 0.09	c : 0.09	i : 0.07	d : 0.07	! : 0.07	= : 0.05	" : 0.03	b : 0.03	# : 0.01	[ : 0.01	$ : 0.01	a : 0.01	
e : 0.18	g : 0.15	f : 0.11	d : 0.11	c : 0.09	! : 0.09	i : 0.07	= : 0.05	[ : 0.03	b : 0.03	# : 0.01	" : 0.01	
g : 0.16	d : 0.13	f : 0.11	e : 0.11	c : 0.11	! : 0.11	= : 0.05	b : 0.05	i : 0.03	# : 0.03	[ : 0.03	" : 0.01	
g : 0.16	e : 0.13	c : 0.13	d : 0.09	! : 0.09	f : 0.07	[ : 0.07	= : 0.05	i : 0.03	# : 0.03	b : 0.03	a : 0.03	" : 0.01	
g : 0.20	e : 0.15	c : 0.15	[ : 0.13	d : 0.09	f : 0.05	= : 0.05	a : 0.03	! : 0.03	# : 0.03	i : 0.01	" : 0.01	
g : 0.20	c : 0.20	d : 0.11	e : 0.11	[ : 0.09	! : 0.07	f : 0.05	= : 0.03	# : 0.03	i : 0.01	a : 0.01	b : 0.01	
c : 0.20	! : 0.15	[ : 0.15	g : 0.15	d : 0.11	e : 0.05	a : 0.03	f : 0.03	i : 0.01	# : 0.01	$ : 0.01	b : 0.01	" : 0.01	
c : 0.28	g : 0.15	d : 0.11	b : 0.09	! : 0.09	a : 0.05	e : 0.05	" : 0.05	[ : 0.03	# : 0.01	$ : 0.01	f : 0.01	
c : 0.22	b : 0.16	" : 0.13	g : 0.13	d : 0.07	[ : 0.05	# : 0.05	! : 0.03	f : 0.03	e : 0.03	a : 0.01	$ : 0.01	
c : 0.18	" : 0.15	! : 0.13	[ : 0.11	g : 0.09	b : 0.09	a : 0.05	# : 0.05	f : 0.03	$ : 0.03	d : 0.01	e : 0.01	
[ : 0.22	! : 0.16	" : 0.11	c : 0.09	d : 0.07	g : 0.07	a : 0.05	# : 0.05	b : 0.03	f : 0.03	$ : 0.03	s : 0.01	
c : 0.47	[ : 0.11	d : 0.09	b : 0.05	! : 0.05	# : 0.05	g : 0.03	s : 0.03	" : 0.03	f : 0.01	$ : 0.01	
c : 0.56	d : 0.13	b : 0.13	s : 0.03	a : 0.03	r : 0.01	g : 0.01	f : 0.01	$ : 0.01	[ : 0.01	
c : 0.52	d : 0.13	b : 0.09	o : 0.05	r : 0.03	s : 0.03	g : 0.01	n : 0.01	f : 0.01	[ : 0.01	$ : 0.01	a : 0.01	
o : 0.47	c : 0.15	m : 0.09	n : 0.09	d : 0.05	l : 0.05	r : 0.03	s : 0.03	
o : 0.47	n : 0.16	m : 0.13	l : 0.07	r : 0.03	s : 0.03	d : 0.03	c : 0.03	
o : 0.47	n : 0.16	m : 0.13	l : 0.11	r : 0.03	s : 0.03	c : 0.03	
o : 0.47	n : 0.16	m : 0.13	l : 0.09	c : 0.05	r : 0.03	s : 0.03	
o : 0.47	c : 0.16	n : 0.15	l : 0.07	r : 0.03	m : 0.03	s : 0.03	a : 0.01	
o : 0.41	c : 0.22	d : 0.07	n : 0.07	b : 0.05	r : 0.03	s : 0.03	l : 0.03	2 : 0.01	a : 0.01	
c : 0.54	d : 0.13	b : 0.13	r : 0.03	3 : 0.03	g : 0.01	2 : 0.01	f : 0.01	] : 0.01	s : 0.01	a : 0.01	
c : 0.49	b : 0.13	d : 0.13	] : 0.11	3 : 0.05	g : 0.01	f : 0.01	4 : 0.01	r : 0.01	
c : 0.54	d : 0.13	b : 0.07	4 : 0.05	3 : 0.05	] : 0.03	g : 0.03	f : 0.01	a : 0.01	2 : 0.01	
] : 0.24	c : 0.16	b : 0.11	2 : 0.11	3 : 0.09	4 : 0.09	d : 0.05	g : 0.05	a : 0.01	f : 0.01	5 : 0.01	
2 : 0.18	c : 0.16	b : 0.13	g : 0.11	4 : 0.09	3 : 0.07	a : 0.07	e : 0.05	] : 0.03	f : 0.01	5 : 0.01	d : 0.01	
g : 0.16	] : 0.16	2 : 0.15	c : 0.11	3 : 0.11	4 : 0.07	e : 0.05	d : 0.05	b : 0.03	a : 0.01	f : 0.01	5 : 0.01	
g : 0.20	c : 0.16	d : 0.15	a : 0.09	e : 0.09	] : 0.05	2 : 0.05	= : 0.03	f : 0.03	4 : 0.03	3 : 0.03	5 : 0.01	
g : 0.20	c : 0.18	d : 0.15	] : 0.11	e : 0.09	= : 0.05	2 : 0.03	f : 0.03	3 : 0.03	a : 0.01	5 : 0.01	b : 0.01	i : 0.01	
g : 0.20	c : 0.18	d : 0.18	e : 0.09	i : 0.05	2 : 0.05	= : 0.05	] : 0.05	f : 0.03	3 : 0.01	a : 0.01	b : 0.01	
g : 0.18	c : 0.16	d : 0.15	] : 0.09	2 : 0.07	i : 0.05	f : 0.05	= : 0.05	e : 0.05	a : 0.05	3 : 0.01	4 : 0.01	
g : 0.18	c : 0.13	f : 0.11	] : 0.11	d : 0.09	2 : 0.09	e : 0.07	i : 0.05	= : 0.05	3 : 0.03	4 : 0.01	a : 0.01	
g : 0.16	e : 0.13	d : 0.13	f : 0.11	c : 0.07	2 : 0.07	i : 0.05	= : 0.05	a : 0.05	b : 0.05	3 : 0.03	4 : 0.01	] : 0.01	
e : 0.13	g : 0.11	4 : 0.09	] : 0.09	2 : 0.09	b : 0.09	f : 0.07	d : 0.07	i : 0.05	= : 0.05	c : 0.05	3 : 0.03	0 : 0.01	
e : 0.15	f : 0.11	g : 0.09	i : 0.07	] : 0.07	4 : 0.07	d : 0.07	2 : 0.07	c : 0.07	= : 0.05	b : 0.05	3 : 0.03	a : 0.01	0 : 0.01	
e : 0.22	f : 0.13	g : 0.09	c : 0.09	i : 0.07	4 : 0.07	= : 0.05	] : 0.05	d : 0.05	b : 0.03	2 : 0.03	3 : 0.03	0 : 0.01	
e : 0.20	c : 0.11	f : 0.11	g : 0.09	i : 0.07	4 : 0.07	= : 0.05	2 : 0.05	] : 0.03	b : 0.03	3 : 0.03	d : 0.01	a : 0.01	: : 0.01	0 : 0.01	[ : 0.01	

#score	726.9679043758752
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_CDS_m1_run2.txt

#BEAR
bbb!!bb[dddd[bbddddoooooodddd22bb]dddd22	chr16:28837469-28837709(+)$1	240	158	198	15.1629
ddd[ffffffggggggg[cccnnnnnccc]ggggggg333	chr19:10406926-10407190(+)$1	264	102	142	15.2427
!dddd!!dddd[dddd[eeeeellleeeee]dddddddd2	chr17:79894570-79894827(-)$1	257	94	134	15.8382
cdddd[ccc[dddd[cccddddllldddd]ccc]dddd]c	chr3:47894658-47894935(-)$1	277	116	156	18.2970
fdddd[a!!==========[bblllbb]==========22	chr17:26940991-26941300(-)$1	309	186	226	19.6465
iiiiiiii####ggggggg[bblllbb]ggggggg22iii	chr17:46053121-46053361(+)$1	240	35	75	15.7999
eeeee!!a!!bb!!cccddddmmmmdddd]ccc22bb333	chr17:46052349-46052635(+)$1	286	169	209	16.7677

#otherMatches

#Seq PSSM
ACAUUGUGGACACCAUGGUGUUUAAGCCAAGUGAUGUCAU	chr16:28837469-28837709(+)$1	240	158	198	15.1629
GUCGCCGUgggcggcgcggcggggggcgcggcgcugcugg	chr19:10406926-10407190(+)$1	264	102	142	15.2427
GGUGCCAUCUGUGGGGGCUUUGGGCCAGGGGUCUCCGGAC	chr17:79894570-79894827(-)$1	257	94	134	15.8382
UCCUCUGUGUCCGGGUCCCCCUGCUGGGGAGGAGCCGGCC	chr3:47894658-47894935(-)$1	277	116	156	18.2970
CCCUCACAAGGUAGGCUGUGGGGCUCUGGCAGCCUACUGA	chr17:26940991-26941300(-)$1	309	186	226	19.6465
ACCAUGUGGCCCAGGCCAAAGCCCAGUGUUGGCCUUACGC	chr17:46053121-46053361(+)$1	240	35	75	15.7999
UCUCAGUGGAACUCUCUAGCCUCCUGGUUCGGAAUGUCAA	chr17:46052349-46052635(+)$1	286	169	209	16.7677

#DB
(((..((.((((.((((((......))))..)).))))..	chr16:28837469-28837709(+)$1	1	158	198	15.1629
(((.(((((((((((((.(((.....))).)))))))...	chr19:10406926-10407190(+)$1	1	102	142	15.2427
.((((..((((.((((.(((((...))))).)))))))).	chr17:79894570-79894827(-)$1	1	94	134	15.8382
(((((.(((.((((.(((((((...)))).))).)))).)	chr3:47894658-47894935(-)$1	1	116	156	18.2970
)((((.(..((((((((((.((...)).))))))))))..	chr17:26940991-26941300(-)$1	1	186	226	19.6465
((((((((....(((((((.((...)).)))))))..)))	chr17:46053121-46053361(+)$1	1	35	75	15.7999
(((((..(..((..(((((((....)))).)))..))...	chr17:46052349-46052635(+)$1	1	169	209	16.7677

#PSSM
b : 0.14	d : 0.14	! : 0.14	c : 0.14	f : 0.14	i : 0.14	e : 0.14	
d : 0.57	b : 0.14	i : 0.14	e : 0.14	
d : 0.57	b : 0.14	i : 0.14	e : 0.14	
d : 0.42	! : 0.14	[ : 0.14	i : 0.14	e : 0.14	
d : 0.42	! : 0.14	f : 0.14	i : 0.14	e : 0.14	
! : 0.28	[ : 0.28	b : 0.14	f : 0.14	i : 0.14	
! : 0.28	b : 0.14	f : 0.14	c : 0.14	a : 0.14	i : 0.14	
[ : 0.14	f : 0.14	d : 0.14	c : 0.14	! : 0.14	i : 0.14	a : 0.14	
d : 0.28	! : 0.28	f : 0.14	c : 0.14	# : 0.14	
d : 0.28	f : 0.14	[ : 0.14	= : 0.14	# : 0.14	! : 0.14	
d : 0.42	g : 0.14	= : 0.14	# : 0.14	b : 0.14	
d : 0.28	g : 0.14	[ : 0.14	= : 0.14	# : 0.14	b : 0.14	
g : 0.28	d : 0.28	[ : 0.14	= : 0.14	! : 0.14	
g : 0.28	d : 0.28	b : 0.14	= : 0.14	! : 0.14	
g : 0.28	b : 0.14	d : 0.14	[ : 0.14	= : 0.14	c : 0.14	
d : 0.28	g : 0.28	c : 0.28	= : 0.14	
g : 0.28	c : 0.28	d : 0.14	[ : 0.14	= : 0.14	
d : 0.28	[ : 0.14	e : 0.14	c : 0.14	= : 0.14	g : 0.14	
d : 0.42	c : 0.14	e : 0.14	= : 0.14	g : 0.14	
d : 0.28	[ : 0.28	o : 0.14	c : 0.14	e : 0.14	
d : 0.28	b : 0.28	o : 0.14	c : 0.14	e : 0.14	
b : 0.28	o : 0.14	n : 0.14	e : 0.14	d : 0.14	m : 0.14	
l : 0.57	o : 0.14	n : 0.14	m : 0.14	
l : 0.57	o : 0.14	n : 0.14	m : 0.14	
l : 0.57	o : 0.14	n : 0.14	m : 0.14	
d : 0.42	b : 0.28	n : 0.14	e : 0.14	
d : 0.42	b : 0.28	c : 0.14	e : 0.14	
d : 0.42	] : 0.28	c : 0.14	e : 0.14	
d : 0.42	c : 0.14	e : 0.14	= : 0.14	g : 0.14	
] : 0.42	2 : 0.14	e : 0.14	= : 0.14	g : 0.14	
g : 0.28	c : 0.28	2 : 0.14	] : 0.14	= : 0.14	
g : 0.28	c : 0.28	b : 0.14	d : 0.14	= : 0.14	
g : 0.28	c : 0.28	b : 0.14	d : 0.14	= : 0.14	
] : 0.28	g : 0.28	d : 0.14	= : 0.14	2 : 0.14	
d : 0.42	g : 0.28	= : 0.14	2 : 0.14	
d : 0.42	g : 0.14	= : 0.14	2 : 0.14	b : 0.14	
d : 0.42	g : 0.14	= : 0.14	2 : 0.14	b : 0.14	
d : 0.42	3 : 0.28	= : 0.14	i : 0.14	
2 : 0.28	3 : 0.28	d : 0.14	] : 0.14	i : 0.14	
2 : 0.42	3 : 0.28	c : 0.14	i : 0.14	

#score	116.75525270137143
#seq	7
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_CDS_m3_run1.txt

#BEAR
:ggggggg[a[ammmma]a]ggggggg	chr19:4847732-4848031(-)$1	299	39	66	11.7775
fffff[bb[cccmmmmcccbb]fffff	chr7:933369-933684(+)$1	315	260	287	11.5208
ccc!!gggggggmmmmggggggg]ccc	chr5:891281-891503(-)$1	222	31	58	11.4455
eeeeeccc!!bbmmmmbb333ccc]ee	chr1:182825553-182825814(+)$1	261	19	46	11.7768
=========cccmmmmccc]=======	chrX:48339998-48340270(+)$1	272	13	40	15.1478
####dddd[cccmmmmccc]ddddeee	chr6:34824033-34824286(+)$1	253	12	39	12.6931
======="""bblllbb333=======	chr16:2867258-2867554(+)$1	296	132	159	11.0168
dddd[ccc[cccmmmmccccccdddd2	chr16:28969872-28970170(+)$1	298	123	150	11.8735
"""iiiiiiiiinnnnniiiiiiiii3	chr14:20825653-20825939(+)$1	286	126	153	9.2693
##bb[ccc[cccmmmmccc]ccc22bb	chr19:11493750-11494068(-)$1	318	247	274	13.1462
$ccc[bb!!cccmmmmccc22bb]ccc	chr3:41266722-41266961(+)$1	239	26	53	13.2127
ffff[ddddcccmmmmccc]dddd]ff	chr7:2255479-2255746(-)$1	267	35	62	11.7474
[dddd!!cccccclllccc]ccc]ddd	chr5:61800365-61800630(+)$1	265	125	152	10.1771
c!!ccc[a[a[ammmma]a]a]ccc22	chr12:124017855-124018137(-)$1	282	193	220	12.3191
$============lll===========	chr2:111425147-111425431(-)$1	284	108	135	11.3027
dddd"""a[cccmmmmccc]a333ddd	chr2:152293654-152293900(+)$1	246	107	134	13.5311
ggggg####cccmmmmccc22gggggg	chr6:30638536-30638781(-)$1	245	169	196	14.2745
i[ccc[ccc[bbmmmmbb]ccc]ccc]	chr15:91456104-91456317(+)$1	213	152	179	10.9407
c[a[eeeee[bbmmmmbbeeeee]acc	chr21:46687308-46687558(-)$1	250	33	60	9.4999
iiiii[bb[cccmmmmcccbb]iiiii	chr5:137902726-137902970(-)$1	244	156	183	13.1240
[bbeeeee[cccmmmmccc]eeeee]b	chr18:8706479-8706801(+)$1	322	80	107	11.9346
iiiiiiii[cccmmmmccc]iiiiiii	chr6:117890686-117891006(-)$1	320	11	38	14.7415
gggggg####bbmmmmbb333gggggg	chr18:47810322-47810580(-)$1	258	188	215	12.7799
ff[a[bb"""bbmmmmbb333bb]a]f	chr7:99695433-99695655(-)$1	222	172	199	11.7840
========[cccmmmmccc]=======	chr3:128363656-128363937(-)$1	281	96	123	15.4709
dddffffffcccmmmmccc]ffffffd	chr11:125447309-125447636(+)$1	327	194	221	11.2661
###ffffffcccmmmmccc]ffffff6	chr5:175782595-175782905(-)$1	310	39	66	11.8435
eeeeee"""cccmmmmccc333eeeee	chr1:155717574-155717847(+)$1	273	63	90	13.3960
:ggggggg[cccmmmmccc]ggggggg	chr12:124228216-124228467(+)$1	251	61	88	13.3723
!!bb!!abbcccmmmmccc]bb]a22b	chr11:66974875-66975111(+)$1	236	142	169	12.0892
ff[ccc####bbmmmmbb4444cccff	chr17:76121129-76121388(-)$1	259	151	178	11.8558
###bb!!a[cccmmmmccca22bb333	chr6:33248115-33248400(-)$1	285	153	180	13.2081
g$$$$$ccccccmmmmccc22ccc444	chr7:139094277-139094501(+)$1	224	130	157	12.8555
:===========nnnnn==========	chr20:5545522-5545769(-)$1	247	17	44	9.1011
b####ddddcccmmmmccc]dddd444	chr9:95009564-95009797(-)$1	233	28	55	12.2205
$$$$$ddddcccmmmmccc]ddddddd	chr9:33255149-33255418(-)$1	269	145	172	11.2023
ff$$$$$a[cccmmmmccc]a22ffff	chr17:40146761-40147017(-)$1	256	171	198	12.5559
:cccccc!!cccmmmmccc333ccc]c	chr2:130911951-130912209(-)$1	258	44	71	13.6455
eeeee[ccccccmmmmccc22ccc]ee	chr15:58971297-58971536(-)$1	239	204	231	12.8522
::iiiiiiiiiammmma]iiiiiiiii	chr8:48830735-48830988(-)$1	253	24	51	10.6179
eeeee####cccmmmmccc333eeeee	chr2:174055666-174055910(+)$1	244	131	158	13.5658
:===========mmmm===========	chr8:124373746-124373987(-)$1	241	11	38	12.6812
iiii[bb!!cccmmmmccc4444bb]i	chr22:42296188-42296468(+)$1	280	63	90	13.4802
fffff####cccmmmmccc333fffff	chr16:57799159-57799484(-)$1	325	274	301	13.5914
ee[cccccccccmmmmccc]ccc22cc	chr16:85687746-85688022(+)$1	276	71	98	12.8987
d!!a[ccc[cccmmmmccc22cccadd	chr12:108918113-108918353(-)$1	240	79	106	13.8980
[ccc!!ffffffmmmmffffff333cc	chr10:93593506-93593789(+)$1	283	147	174	10.3685
!!bb[ddddcccmmmmccc]ddddbbe	chr6:31655949-31656205(-)$1	256	168	195	11.6064
eeee!!bb[cccmmmmccc]bb]eeee	chr1:201816294-201816572(+)$1	278	126	153	12.6780
F:ccc[a!!cccmmmmccc333a]ccc	chr16:24802734-24802957(+)$1	223	111	138	13.2248
:ggggggg[cccmmmmccc22gggggg	chr19:46027233-46027497(+)$1	264	220	247	13.3311
"===========mmmm===========	chr6:135813265-135813559(-)$1	294	213	240	13.5944

#otherMatches

#Seq PSSM
UGGACAGUGUGAUUCUUGGGACUGUCU	chr19:4847732-4848031(-)$1	299	39	66	11.7775
ACACCCACUCCAGCCCUGGGUCGGUGU	chr7:933369-933684(+)$1	315	260	287	11.5208
GGGGAUUGGGCAGACCUGUCCGGAUCC	chr5:891281-891503(-)$1	222	31	58	11.4455
CUAAGCAGUUGGAAAGCCUGCCUGACU	chr1:182825553-182825814(+)$1	261	19	46	11.7768
CCUGGCAGAGGCCUUCGCUGUCUGUCA	chrX:48339998-48340270(+)$1	272	13	40	15.1478
GUGAGGCCAUGGAGACCCGAGGCCAGU	chr6:34824033-34824286(+)$1	253	12	39	12.6931
GAGGUGGAGGCCGCGGGGAGUCACUUC	chr16:2867258-2867554(+)$1	296	132	159	11.0168
CAAGGCAGGAAGACCUCUUUUGCUUGU	chr16:28969872-28970170(+)$1	298	123	150	11.8735
UUUUUUCCAUUUGGCAGGAAUGGGAGU	chr14:20825653-20825939(+)$1	286	126	153	9.2693
CGAGCGCUGGGGUGGGCCCGGGCAACU	chr19:11493750-11494068(-)$1	318	247	274	13.1462
AGGGGAGUAGUUUCAGAAUGUCUACCC	chr3:41266722-41266961(+)$1	239	26	53	13.2127
AGGGGCAGGGCUCCCGGGCUCUUGGCC	chr7:2255479-2255746(-)$1	267	35	62	11.7474
UAGGUCCGUAUUGAAACAGCUACAACU	chr5:61800365-61800630(+)$1	265	125	152	10.1771
ACAUCGCGUCGCUUGUGGGCCACGAGU	chr12:124017855-124018137(-)$1	282	193	220	12.3191
UAGGUACAUUGUUGUAAAUAAUGUAUU	chr2:111425147-111425431(-)$1	284	108	135	11.3027
GGAACAUCCGUUAAUCAGCAGCCCUUC	chr2:152293654-152293900(+)$1	246	107	134	13.5311
GGACAAGGAUCGGACUCGAAAUGUCCU	chr6:30638536-30638781(-)$1	245	169	196	14.2745
GUGUGGGCUCCACAACUGUGGCGUAUU	chr15:91456104-91456317(+)$1	213	152	179	10.9407
GUGGAUCUGCGCACACGCCAGGUGCCU	chr21:46687308-46687558(-)$1	250	33	60	9.4999
UUUCUAUCCUGGAAAUUCAGAAAGGAG	chr5:137902726-137902970(-)$1	244	156	183	13.1240
AUGUCCGGGGGCGCUCGCCACCGGAGC	chr18:8706479-8706801(+)$1	322	80	107	11.9346
UGAAAUAUAUUUUUAAGAAAAUAUUUU	chr6:117890686-117891006(-)$1	320	11	38	14.7415
CUGCUCGAACGCAUUCGCCGAGAGCAG	chr18:47810322-47810580(-)$1	258	188	215	12.7799
CCAGGGAGGAGCUGAGGCAAAUUGCAG	chr7:99695433-99695655(-)$1	222	172	199	11.7840
CUUUUUCUGUUGUAGGUAAAGGGAGAA	chr3:128363656-128363937(-)$1	281	96	123	15.4709
AGUGGGAGAUGAUGUUUCAGUCUCCCU	chr11:125447309-125447636(+)$1	327	194	221	11.2661
UUUUGCUCUGUUCAAGAACAAGAGUAU	chr5:175782595-175782905(-)$1	310	39	66	11.8435
GGCGGGGAAUAAUAACUUGGGGCCUGC	chr1:155717574-155717847(+)$1	273	63	90	13.3960
UAGUUAUUUUCUUCUUGGAUAGUAAUU	chr12:124228216-124228467(+)$1	251	61	88	13.3723
ACAGAAAGGCAUUGAAAUGACCAUGGC	chr11:66974875-66975111(+)$1	236	142	169	12.0892
UGAGCAGCCCCGACCCUGACCAUGCCG	chr17:76121129-76121388(-)$1	259	151	178	11.8558
GAAGCAGCGCCAGGAGUGGGAGGUGAA	chr6:33248115-33248400(-)$1	285	153	180	13.2081
GUAAUGGGCCAAGUAAUUGAAGUUGAA	chr7:139094277-139094501(+)$1	224	130	157	12.8555
ACUGAGAUUUUGUGUUUUAAAAUUUCA	chr20:5545522-5545769(-)$1	247	17	44	9.1011
CAGAACCAGAUCACAUGGUCCUGGGGA	chr9:95009564-95009797(-)$1	233	28	55	12.2205
AACAUCUGCCAGGAGACUGAGCGGCUG	chr9:33255149-33255418(-)$1	269	145	172	11.2023
CAAAAUUCCCAUUCGUGUGUGUGUGUG	chr17:40146761-40147017(-)$1	256	171	198	12.5559
CCUGGGUCAUGGCUCCCCAGACACCUC	chr2:130911951-130912209(-)$1	258	44	71	13.6455
GAUGAUAUUAGUAAGUACUUAAGUUUU	chr15:58971297-58971536(-)$1	239	204	231	12.8522
AUUUUCGUUUACUAUUGAUAGAUGAGA	chr8:48830735-48830988(-)$1	253	24	51	10.6179
AACCAUACAACACACAUGUCCUUGGUU	chr2:174055666-174055910(+)$1	244	131	158	13.5658
UGGAGCAUUAGGUAUUUCUGAUGCUUU	chr8:124373746-124373987(-)$1	241	11	38	12.6812
GCAGUCACUGGCUUGGGCCCCUCUGCC	chr22:42296188-42296468(+)$1	280	63	90	13.4802
AGGGUGGGAAGUUAAGACUGAAGCCCU	chr16:57799159-57799484(-)$1	325	274	301	13.5914
GGCUGUGUCCUGUGGUCAGUGGCCUAU	chr16:85687746-85688022(+)$1	276	71	98	12.8987
UACGUGGAGUAUGAAAAUGAAUCCCAG	chr12:108918113-108918353(-)$1	240	79	106	13.8980
UGCAUAUUGUGGUCAUCUACAAACCUG	chr10:93593506-93593789(+)$1	283	147	174	10.3685
CAUCACCACCACGUGAGUGCGUGGGAA	chr6:31655949-31656205(-)$1	256	168	195	11.6064
UUGGCAGAACUGACUGUAGAUCCCCAG	chr1:201816294-201816572(+)$1	278	126	153	12.6780
UACAGGCAAACCUCCUGGUACAGGCUG	chr16:24802734-24802957(+)$1	223	111	138	13.2248
agcccaggaggucaagaccagccuggg	chr19:46027233-46027497(+)$1	264	220	247	13.3311
uauguauaaaauuuauauuuuauaCAU	chr6:135813265-135813559(-)$1	294	213	240	13.5944

#DB
.(((((((.(.(....).).)))))))	chr19:4847732-4848031(-)$1	1	39	66	11.7775
(((((.((.(((....))))).)))))	chr7:933369-933684(+)$1	1	260	287	11.5208
(((..(((((((....))))))).)))	chr5:891281-891503(-)$1	1	31	58	11.4455
((((((((..((....))...))).))	chr1:182825553-182825814(+)$1	1	19	46	11.7768
((((((((((((....))).)))))))	chrX:48339998-48340270(+)$1	1	13	40	15.1478
....((((.(((....))).)))))))	chr6:34824033-34824286(+)$1	1	12	39	12.6931
(((((((...((...))...)))))))	chr16:2867258-2867554(+)$1	1	132	159	11.0168
((((.(((.(((....)))))))))).	chr16:28969872-28970170(+)$1	1	123	150	11.8735
...(((((((((.....))))))))).	chr14:20825653-20825939(+)$1	1	126	153	9.2693
..((.(((.(((....))).)))..))	chr19:11493750-11494068(-)$1	1	247	274	13.1462
.(((.((..(((....)))..)).)))	chr3:41266722-41266961(+)$1	1	26	53	13.2127
((((.(((((((....))).)))).))	chr7:2255479-2255746(-)$1	1	35	62	11.7474
.((((..((((((...))).))).)))	chr5:61800365-61800630(+)$1	1	125	152	10.1771
(..(((.(.(.(....).).).)))..	chr12:124017855-124018137(-)$1	1	193	220	12.3191
.((((((((((((...)))))))))))	chr2:111425147-111425431(-)$1	1	108	135	11.3027
((((...(.(((....))).)...)))	chr2:152293654-152293900(+)$1	1	107	134	13.5311
(((((....(((....)))..))))))	chr6:30638536-30638781(-)$1	1	169	196	14.2745
(.(((.(((.((....)).))).))).	chr15:91456104-91456317(+)$1	1	152	179	10.9407
(.(.(((((.((....))))))).)))	chr21:46687308-46687558(-)$1	1	33	60	9.4999
(((((.((.(((....))))).)))))	chr5:137902726-137902970(-)$1	1	156	183	13.1240
.(((((((.(((....))).))))).)	chr18:8706479-8706801(+)$1	1	80	107	11.9346
((((((((.(((....))).)))))))	chr6:117890686-117891006(-)$1	1	11	38	14.7415
((((((....((....))...))))))	chr18:47810322-47810580(-)$1	1	188	215	12.7799
((.(.((...((....))...)).).)	chr7:99695433-99695655(-)$1	1	172	199	11.7840
((((((((.(((....))).)))))))	chr3:128363656-128363937(-)$1	1	96	123	15.4709
)))(((((((((....))).))))))(	chr11:125447309-125447636(+)$1	1	194	221	11.2661
...(((((((((....))).)))))).	chr5:175782595-175782905(-)$1	1	39	66	11.8435
((((((...(((....)))...)))))	chr1:155717574-155717847(+)$1	1	63	90	13.3960
.(((((((.(((....))).)))))))	chr12:124228216-124228467(+)$1	1	61	88	13.3723
..((..((((((....))).)).)..)	chr11:66974875-66975111(+)$1	1	142	169	12.0892
((.(((....((....))....)))))	chr17:76121129-76121388(-)$1	1	151	178	11.8558
...((..(.(((....))))..))...	chr6:33248115-33248400(-)$1	1	153	180	13.2081
(.....((((((....)))..)))...	chr7:139094277-139094501(+)$1	1	130	157	12.8555
.(((((((((((.....))))))))))	chr20:5545522-5545769(-)$1	1	17	44	9.1011
(....(((((((....))).))))...	chr9:95009564-95009797(-)$1	1	28	55	12.2205
.....(((((((....))).)))))))	chr9:33255149-33255418(-)$1	1	145	172	11.2023
((.....(.(((....))).)..))))	chr17:40146761-40147017(-)$1	1	171	198	12.5559
.((((((..(((....)))...))).)	chr2:130911951-130912209(-)$1	1	44	71	13.6455
(((((.((((((....)))..))).))	chr15:58971297-58971536(-)$1	1	204	231	12.8522
..((((((((((....).)))))))))	chr8:48830735-48830988(-)$1	1	24	51	10.6179
(((((....(((....)))...)))))	chr2:174055666-174055910(+)$1	1	131	158	13.5658
.(((((((((((....)))))))))))	chr8:124373746-124373987(-)$1	1	11	38	12.6812
((((.((..(((....)))....)).)	chr22:42296188-42296468(+)$1	1	63	90	13.4802
(((((....(((....)))...)))))	chr16:57799159-57799484(-)$1	1	274	301	13.5914
((.(((((((((....))).)))..))	chr16:85687746-85688022(+)$1	1	71	98	12.8987
(..(.(((.(((....)))..))))))	chr12:108918113-108918353(-)$1	1	79	106	13.8980
.(((..((((((....))))))...))	chr10:93593506-93593789(+)$1	1	147	174	10.3685
..((.(((((((....))).)))))))	chr6:31655949-31656205(-)$1	1	168	195	11.6064
((((..((.(((....))).)).))))	chr1:201816294-201816572(+)$1	1	126	153	12.6780
).(((.(..(((....)))...).)))	chr16:24802734-24802957(+)$1	1	111	138	13.2248
.(((((((.(((....)))..))))))	chr19:46027233-46027497(+)$1	1	220	247	13.3311
.(((((((((((....)))))))))))	chr6:135813265-135813559(-)$1	1	213	240	13.5944

#PSSM
: : 0.13	f : 0.11	e : 0.11	# : 0.07	d : 0.07	i : 0.07	c : 0.05	= : 0.05	$ : 0.05	[ : 0.05	g : 0.05	" : 0.03	! : 0.03	b : 0.01	F : 0.01	
= : 0.13	f : 0.11	e : 0.11	g : 0.09	# : 0.09	c : 0.07	d : 0.07	! : 0.07	i : 0.05	[ : 0.03	$ : 0.03	: : 0.03	" : 0.01	b : 0.01	
= : 0.13	c : 0.11	g : 0.09	e : 0.09	# : 0.07	d : 0.07	b : 0.07	i : 0.07	f : 0.05	[ : 0.05	$ : 0.05	! : 0.03	" : 0.01	a : 0.01	
c : 0.15	= : 0.13	e : 0.11	g : 0.09	f : 0.09	i : 0.09	b : 0.07	d : 0.05	$ : 0.05	# : 0.03	a : 0.03	! : 0.01	[ : 0.01	
[ : 0.15	= : 0.13	e : 0.11	c : 0.11	g : 0.09	f : 0.07	! : 0.07	i : 0.07	$ : 0.05	d : 0.03	" : 0.01	b : 0.01	# : 0.01	
c : 0.15	= : 0.13	g : 0.09	[ : 0.09	d : 0.09	! : 0.09	i : 0.05	b : 0.05	# : 0.05	e : 0.05	f : 0.03	$ : 0.03	" : 0.01	
c : 0.17	= : 0.13	b : 0.11	d : 0.09	# : 0.09	g : 0.07	i : 0.05	f : 0.05	! : 0.03	" : 0.03	e : 0.03	a : 0.03	[ : 0.01	$ : 0.01	
c : 0.17	= : 0.11	d : 0.09	# : 0.09	g : 0.07	b : 0.07	! : 0.07	a : 0.07	" : 0.05	i : 0.05	f : 0.05	e : 0.03	
[ : 0.32	! : 0.09	= : 0.09	c : 0.09	# : 0.09	d : 0.07	" : 0.05	f : 0.05	i : 0.03	g : 0.01	e : 0.01	b : 0.01	
c : 0.67	= : 0.07	a : 0.03	" : 0.03	i : 0.03	[ : 0.03	# : 0.03	g : 0.01	! : 0.01	f : 0.01	
c : 0.67	b : 0.13	= : 0.07	[ : 0.03	i : 0.03	g : 0.01	f : 0.01	
c : 0.67	b : 0.13	= : 0.07	a : 0.05	g : 0.01	i : 0.01	f : 0.01	
m : 0.90	n : 0.03	l : 0.01	c : 0.01	= : 0.01	
m : 0.90	l : 0.05	n : 0.03	
m : 0.90	l : 0.05	n : 0.03	
m : 0.90	n : 0.03	l : 0.03	b : 0.01	
c : 0.67	b : 0.13	a : 0.05	= : 0.05	n : 0.03	g : 0.01	f : 0.01	
c : 0.67	b : 0.11	= : 0.07	] : 0.05	g : 0.01	3 : 0.01	i : 0.01	f : 0.01	
c : 0.67	3 : 0.07	= : 0.07	a : 0.03	i : 0.03	g : 0.01	] : 0.01	e : 0.01	4 : 0.01	f : 0.01	
] : 0.40	3 : 0.17	2 : 0.11	= : 0.07	b : 0.03	c : 0.03	i : 0.03	4 : 0.03	g : 0.01	e : 0.01	a : 0.01	f : 0.01	
3 : 0.15	= : 0.13	2 : 0.13	d : 0.09	c : 0.09	b : 0.07	g : 0.05	i : 0.05	a : 0.05	f : 0.05	e : 0.03	4 : 0.03	
c : 0.17	= : 0.13	g : 0.11	3 : 0.11	d : 0.09	b : 0.07	] : 0.05	i : 0.05	f : 0.05	e : 0.03	4 : 0.03	2 : 0.03	
c : 0.19	= : 0.13	g : 0.11	d : 0.11	f : 0.07	i : 0.07	e : 0.07	b : 0.05	] : 0.05	3 : 0.03	2 : 0.01	4 : 0.01	a : 0.01	
c : 0.15	= : 0.13	] : 0.11	d : 0.11	g : 0.09	f : 0.09	i : 0.07	e : 0.07	2 : 0.03	3 : 0.03	b : 0.03	a : 0.01	
c : 0.13	= : 0.13	g : 0.09	f : 0.09	e : 0.09	d : 0.07	i : 0.07	] : 0.05	2 : 0.05	a : 0.05	3 : 0.03	4 : 0.03	b : 0.03	
f : 0.13	c : 0.13	= : 0.13	e : 0.11	g : 0.09	d : 0.09	i : 0.07	] : 0.07	b : 0.03	2 : 0.03	4 : 0.03	3 : 0.01	
c : 0.13	e : 0.13	= : 0.13	f : 0.11	g : 0.09	d : 0.09	i : 0.07	b : 0.05	2 : 0.03	3 : 0.03	4 : 0.03	] : 0.01	6 : 0.01	

#score	643.5105272272755
#seq	52
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_UTR_m3_run1.txt

#BEAR
LLLJJJJJJJJJJJLLLDDDDKKBB::eeeeennnnneee	chr9:19378708-19378945(-)$1	237	42	82	47.5901
:::JJJJJJJJJJJLLLDDDDKKBB::eeeeennnnneee	chr9:19378781-19378998(-)$1	217	95	135	46.7825
:::JJJJJJJJJJJLLLDDDDKKBB::eeeeennnnneee	chr9:19378773-19378978(-)$1	205	75	115	46.7825
:::JJJJJJJJJJJLLLDDDDKKBB::eeeeennnnneee	chr9:19378798-19379017(-)$1	219	114	154	46.7825
:::JJJJJJJJJJJLLLDDDDKKBB::eeeeennnnneee	chr9:19378759-19378973(-)$1	214	70	110	46.7825
LLLJJJJJJJJJJJLLLDDDDKKBB::eeeeennnnneee	chr9:19378745-19378959(-)$1	214	56	96	47.5901

#otherMatches

#Seq PSSM
GAAUCAGUGGUGGGAACGACAAACAAGGUUUCCCCAUGAA	chr9:19378708-19378945(-)$1	237	42	82	47.5901
GAAUCAGUGGUGGGAACGACAAACAAGGUUUCCCCAUGAA	chr9:19378781-19378998(-)$1	217	95	135	46.7825
GAAUCAGUGGUGGGAACGACAAACAAGGUUUCCCCAUGAA	chr9:19378773-19378978(-)$1	205	75	115	46.7825
GAAUCAGUGGUGGGAACGACAAACAAGGUUUCCCCAUGAA	chr9:19378798-19379017(-)$1	219	114	154	46.7825
GAAUCAGUGGUGGGAACGACAAACAAGGUUUCCCCAUGAA	chr9:19378759-19378973(-)$1	214	70	110	46.7825
GAAUCAGUGGUGGGAACGACAAACAAGGUUUCCCCAUGAA	chr9:19378745-19378959(-)$1	214	56	96	47.5901

#DB
...(((((((((((...((((..((..(((((.....)))	chr9:19378708-19378945(-)$1	1	42	82	47.5901
...(((((((((((...((((..((..(((((.....)))	chr9:19378781-19378998(-)$1	1	95	135	46.7825
...(((((((((((...((((..((..(((((.....)))	chr9:19378773-19378978(-)$1	1	75	115	46.7825
...(((((((((((...((((..((..(((((.....)))	chr9:19378798-19379017(-)$1	1	114	154	46.7825
...(((((((((((...((((..((..(((((.....)))	chr9:19378759-19378973(-)$1	1	70	110	46.7825
...(((((((((((...((((..((..(((((.....)))	chr9:19378745-19378959(-)$1	1	56	96	47.5901

#PSSM
: : 0.66	L : 0.33	
: : 0.66	L : 0.33	
: : 0.66	L : 0.33	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
L : 0.99	
L : 0.99	
L : 0.99	
D : 0.99	
D : 0.99	
D : 0.99	
D : 0.99	
K : 0.99	
K : 0.99	
B : 0.99	
B : 0.99	
: : 0.99	
: : 0.99	
e : 0.99	
e : 0.99	
e : 0.99	
e : 0.99	
e : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
e : 0.99	
e : 0.99	
e : 0.99	

#score	282.3103720393998
#seq	6
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_UTR_m2_run1.txt

#BEAR
=============mmmm=============	chr10:3819866-3820125(-)$1	259	145	175	17.6333
=========ddddmmmmdddd333======	chr12:64842225-64842450(+)$1	225	51	81	15.5813
dd"""iiiiiiiiillliiiiiiiii]ddd	chrX:3522330-3522598(-)$1	268	229	259	12.9360
iiiiiiii"""ccclllccc]iiiiiiiii	chr19:896940-897164(-)$1	224	6	36	14.3729
=============mmmm=============	chr11:62284082-62284307(-)$1	225	99	129	17.6333
=============mmmm=============	chr10:11502617-11502886(-)$1	269	233	263	17.6333
d!!cccggggggglllggggggg4444ccc	chr12:12874161-12874422(+)$1	261	64	94	11.3195
iiiiiiiccc[ccclllccc]ccc]iiiii	chr3:167726551-167726772(-)$1	221	185	215	13.4593
g[==========qqqqqqqq==========	chr1:157094412-157094642(-)$1	230	118	148	12.4808
:============mmmm============:	chr1:24088332-24088610(+)$1	278	82	112	15.1770
c####ccc[ddddmmmmddddccc]cccee	chr19:36229616-36229860(+)$1	244	154	184	10.8520
iiiiii!!bb[ccclllccc]bb333iiii	chr19:14230264-14230522(-)$1	258	182	212	13.2052
=============nnnnn============	chr21:34106205-34106489(-)$1	284	179	209	15.8082
hh!!iiiiiiiiiooooooiiiiiiiii]h	chr18:13124749-13125062(+)$1	313	28	58	14.3869
b==========rrrrrrrrr==========	chr22:41575898-41576153(+)$1	255	170	200	14.2143
ii!!gggggggoooooogggggggiiiiii	chr15:83673818-83674056(-)$1	238	49	79	13.5878
iiiii==========nnnnn==========	chr5:167984292-167984530(-)$1	238	105	135	13.8955
ccc[cccbb[cccmmmmccc]bb22ccc]c	chr20:52184064-52184370(-)$1	306	52	82	10.5346
iiiiii!!ccc[aooooooa]ccc22iiii	chr7:100882786-100883073(-)$1	287	117	147	13.4491
[gggggggfffffflllffffff333gggg	chr19:49989290-49989574(+)$1	284	41	71	10.7157
=======[eeeeemmmmeeeee22======	chr19:33137269-33137539(-)$1	270	9	39	14.6740
iiiiii!!a[cccmmmmccc]a22iiiiii	chr8:124025854-124026115(-)$1	261	143	173	14.5256
==========qqqqqqqq============	chr11:120359481-120359762(+)$1	281	194	224	12.4138
ffffff"""ddddmmmmdddd333ffffff	chr19:48206345-48206635(+)$1	290	68	98	9.9257
Diiiiiiiii[aooooooa]iiiiiiiii:	chr15:66841542-66841831(+)$1	289	5	35	12.7816
=============mmmm=============	chr12:124105079-124105322(+)$1	243	57	87	17.6333
=============mmmm=============	chr17:17714336-17714649(+)$1	313	213	243	17.6333
cc===========mmmm===========]c	chr20:62566393-62566698(+)$1	305	147	177	16.7899
c!!ccc!!eeeeemmmmeeeee]ccc]ccc	chr1:31405115-31405350(-)$1	235	117	147	11.6340
!!ggggggg[cccoooooocccggggggg]	chr9:34086373-34086633(-)$1	260	129	159	12.7480
:============$$$$$============	chr2:100017267-100017548(-)$1	281	14	44	12.4247
d!!bb[gggggggmmmmgggggggbb]ddd	chr10:79737022-79737324(-)$1	302	140	170	10.7181
"""ccc!!eeeeemmmmeeeee22cccggg	chr20:49201082-49201327(+)$1	245	211	241	11.8139
iii####ddddoooooodddd4444iiiii	chr6:7251913-7252172(+)$1	259	164	194	12.6295
ccc!!ccceeeeemmmmeeeee333ccc33	chr10:85912619-85912918(+)$1	299	127	157	11.7547
"==========rrrrrrrrr==========	chr3:197510579-197510826(+)$1	247	52	82	14.4844
======"""ddddmmmmdddd4444=====	chr3:194123574-194123815(-)$1	241	135	165	14.8783
!!ggggggg[cccooooooccc]ggggggg	chr13:110406189-110406459(-)$1	270	67	97	12.9163
c!!iiiiiiiiiooooooiiiiiiiii22c	chr2:38522227-38522549(-)$1	322	37	67	14.4181
c!!bb####ddddmmmmdddd4444bb22c	chr10:1085905-1086150(-)$1	245	189	219	10.7524
ddda####eeeeemmmmeeeee4444a]dd	chr1:47141574-47141811(-)$1	237	131	161	10.6488
========[ddddmmmmdddd22=======	chr12:22842975-22843263(+)$1	288	46	76	14.7932
C:==========lll==========fffff	chr2:96851667-96851924(-)$1	257	28	58	11.4064
gggg[bb[eeeeemmmmeeeee]bb]gggg	chr13:73333021-73333290(-)$1	269	39	69	10.9249
###ggggggg[cccoooooocccggggggg	chr16:50351717-50351976(+)$1	259	150	180	11.8103
iiii]ccceeeee4444=============	chr12:131360950-131361194(+)$1	244	130	160	13.0130
:============oooooo===========	chr14:70238462-70238692(+)$1	230	69	99	16.1411
iiii"""ccc[bbmmmmbb]ccc4444iii	chr9:115166174-115166431(+)$1	257	70	100	12.5130

#otherMatches

#Seq PSSM
aguauguguauguguguauauauauauauu	chr10:3819866-3820125(-)$1	259	145	175	17.6333
UUCUUUAUGUGUGAAGACACAAAGUAUGGG	chr12:64842225-64842450(+)$1	225	51	81	15.5813
UUUUCUCCUUUGGUCUAAUCGAGGGAUGGG	chrX:3522330-3522598(-)$1	268	229	259	12.9360
UGAGCUUUUCUGGCCCGGUCUGAAGCUCAA	chr19:896940-897164(-)$1	224	6	36	14.3729
UUGUAUGUGUGUACAUAUAUAUAUAUAUAA	chr11:62284082-62284307(-)$1	225	99	129	17.6333
auauauauauauauauauauauauauauau	chr10:11502617-11502886(-)$1	269	233	263	17.6333
UUACCUUUUAUGUAGCACAUAAACUUUGGG	chr12:12874161-12874422(+)$1	261	64	94	11.3195
AAUACAAUUAUUUUGGUAAAUUAGCUUGUA	chr3:167726551-167726772(-)$1	221	185	215	13.4593
UAGGGGCAUAGACUUGUAUUUUUAUGUUUU	chr1:157094412-157094642(-)$1	230	118	148	12.4808
CAUUUGUAUUUUGGUCCCAAAAUGUAAAUA	chr1:24088332-24088610(+)$1	278	82	112	15.1770
AUGUUUGGAGAGGUGGUCUUCCCAUUUGUA	chr19:36229616-36229860(+)$1	244	154	184	10.8520
AAGCACUUCAUUUAGAAUGAUUGUUUGUGC	chr19:14230264-14230522(-)$1	258	182	212	13.2052
GAUUUUCAAAAGAGGAAUUUUUUUGGAAAU	chr21:34106205-34106489(-)$1	284	179	209	15.8082
CAUUUUUGUGUAAAGUAAAUUACAUAAGUU	chr18:13124749-13125062(+)$1	313	28	58	14.3869
UGUGAGACAGACACCCUGACUUUGUUUCAC	chr22:41575898-41576153(+)$1	255	170	200	14.2143
UUGCUAAUGGUGAAGAGGCUGUUAAAUAGA	chr15:83673818-83674056(-)$1	238	49	79	13.5878
AACGUGAAGUAUUUCUCAUUGAAAUGCUUU	chr5:167984292-167984530(-)$1	238	105	135	13.8955
CAAGGGAGAACUCAUUUGAGAUCAGUCUGU	chr20:52184064-52184370(-)$1	306	52	82	10.5346
CGUCCUUCAGCCCCAUCAUGUGCUUUGGGA	chr7:100882786-100883073(-)$1	287	117	147	13.4491
agaggaaguuggcuagaggccggucccuuC	chr19:49989290-49989574(+)$1	284	41	71	10.7157
UGUUUCCAGGAUGUCUUUAUUCAAGGGAAC	chr19:33137269-33137539(-)$1	270	9	39	14.6740
CAUUGUAUGUAUAAGAAUAUUCUGACAGUG	chr8:124025854-124026115(-)$1	261	143	173	14.5256
UCUGUUUUCUGGGGUCUGGGAAAAUAGAAA	chr11:120359481-120359762(+)$1	281	194	224	12.4138
UAGUACUGUAAGAUAAAUUUUUUUGUACUG	chr19:48206345-48206635(+)$1	290	68	98	9.9257
uggaguucacaggcuCAUCAGUGAAUUCUG	chr15:66841542-66841831(+)$1	289	5	35	12.7816
auauauauauauauauauauauauauauau	chr12:124105079-124105322(+)$1	243	57	87	17.6333
uauauauauguauacauauacauauauaua	chr17:17714336-17714649(+)$1	313	213	243	17.6333
UGUGUGUACAUAUGUGUAUAUGUAUAUAUC	chr20:62566393-62566698(+)$1	305	147	177	16.7899
UCUUGCUUCUAUAAAUAUAUAGUGUAUACU	chr1:31405115-31405350(-)$1	235	117	147	11.6340
UACUAUUGCUAGACCCUCUUCUGUAAUGGG	chr9:34086373-34086633(-)$1	260	129	159	12.7480
GUAAAUAAUUGUGUUAAUUAUUUUACUGUA	chr2:100017267-100017548(-)$1	281	14	44	12.4247
GCUGAUGUAUAAAGAGUUUUGUGCUCCCUG	chr10:79737022-79737324(-)$1	302	140	170	10.7181
CAUGAAUUUGGGGUGCUUCCCAUUUUUUUC	chr20:49201082-49201327(+)$1	245	211	241	11.8139
AGAAUCACAAGUUUGGUUUUGGUACUUUUU	chr6:7251913-7252172(+)$1	259	164	194	12.6295
AUAGAUGUGGUCAUGUUUGACUUGUACAGA	chr10:85912619-85912918(+)$1	299	127	157	11.7547
UGUGAAAAUAUGGUAUAAAGGUGUUUUCAU	chr3:197510579-197510826(+)$1	247	52	82	14.4844
AUGUAUUAAAAUUUGGUAAUUAUGUGUACA	chr3:194123574-194123815(-)$1	241	135	165	14.8783
UAUUUCUUGCUAUUGUGAUAUGACAAGAGA	chr13:110406189-110406459(-)$1	270	67	97	12.9163
AAACUGAACUGUCUUUUUGCAGUUUAGCCU	chr2:38522227-38522549(-)$1	322	37	67	14.4181
GUUUGUUAAAUUCAAUAGAAUGACUCAUUU	chr10:1085905-1086150(-)$1	245	189	219	10.7524
CAGCCAUAUCUCAUCUCUGAGAGGAAGACU	chr1:47141574-47141811(-)$1	237	131	161	10.6488
UUUAUGUUGAAUUGGGAAAUUGUGGCAUAA	chr12:22842975-22843263(+)$1	288	46	76	14.7932
uagagauggaguuucacucuguuucccagg	chr2:96851667-96851924(-)$1	257	28	58	11.4064
AAGACAUUGGCAUUCAAAUGUCUAUAUCUU	chr13:73333021-73333290(-)$1	269	39	69	10.9249
UAAUAGGUCAGUGUAAAGAAAUAUGAUUUG	chr16:50351717-50351976(+)$1	259	150	180	11.8103
UUGCUCCACCUUCAUAUUGGCUAGGUAGGG	chr12:131360950-131361194(+)$1	244	130	160	13.0130
GAAUUAGUUUAAUGCCUUAAUUAAACUAAU	chr14:70238462-70238692(+)$1	230	69	99	16.1411
UCUAAUAAGGUCGUAUUUGUUCUGUUGUAG	chr9:115166174-115166431(+)$1	257	70	100	12.5130

#DB
(((((((((((((....)))))))))))))	chr10:3819866-3820125(-)$1	1	145	175	17.6333
(((((((((((((....))))...))))))	chr12:64842225-64842450(+)$1	1	51	81	15.5813
((...(((((((((...))))))))).)))	chrX:3522330-3522598(-)$1	1	229	259	12.9360
((((((((...(((...))).)))))))))	chr19:896940-897164(-)$1	1	6	36	14.3729
(((((((((((((....)))))))))))))	chr11:62284082-62284307(-)$1	1	99	129	17.6333
(((((((((((((....)))))))))))))	chr10:11502617-11502886(-)$1	1	233	263	17.6333
(..((((((((((...)))))))....)))	chr12:12874161-12874422(+)$1	1	64	94	11.3195
((((((((((.(((...))).))).)))))	chr3:167726551-167726772(-)$1	1	185	215	13.4593
(.((((((((((........))))))))))	chr1:157094412-157094642(-)$1	1	118	148	12.4808
.((((((((((((....)))))))))))).	chr1:24088332-24088610(+)$1	1	82	112	15.1770
(....(((.((((....))))))).)))))	chr19:36229616-36229860(+)$1	1	154	184	10.8520
((((((..((.(((...))).))...))))	chr19:14230264-14230522(-)$1	1	182	212	13.2052
(((((((((((((.....))))))))))))	chr21:34106205-34106489(-)$1	1	179	209	15.8082
((..(((((((((......))))))))).)	chr18:13124749-13125062(+)$1	1	28	58	14.3869
)((((((((((.........))))))))))	chr22:41575898-41576153(+)$1	1	170	200	14.2143
((..(((((((......)))))))))))))	chr15:83673818-83674056(-)$1	1	49	79	13.5878
)))))((((((((((.....))))))))))	chr5:167984292-167984530(-)$1	1	105	135	13.8955
(((.(((((.(((....))).))..))).)	chr20:52184064-52184370(-)$1	1	52	82	10.5346
((((((..(((.(......).)))..))))	chr7:100882786-100883073(-)$1	1	117	147	13.4491
.(((((((((((((...))))))...))))	chr19:49989290-49989574(+)$1	1	41	71	10.7157
(((((((.(((((....)))))..))))))	chr19:33137269-33137539(-)$1	1	9	39	14.6740
((((((..(.(((....))).)..))))))	chr8:124025854-124026115(-)$1	1	143	173	14.5256
((((((((((........))))))))))))	chr11:120359481-120359762(+)$1	1	194	224	12.4138
((((((...((((....))))...))))))	chr19:48206345-48206635(+)$1	1	68	98	9.9257
((((((((((.(......).))))))))).	chr15:66841542-66841831(+)$1	1	5	35	12.7816
(((((((((((((....)))))))))))))	chr12:124105079-124105322(+)$1	1	57	87	17.6333
(((((((((((((....)))))))))))))	chr17:17714336-17714649(+)$1	1	213	243	17.6333
(((((((((((((....))))))))))).)	chr20:62566393-62566698(+)$1	1	147	177	16.7899
(..(((..(((((....))))).))).)))	chr1:31405115-31405350(-)$1	1	117	147	11.6340
..(((((((.(((......)))))))))).	chr9:34086373-34086633(-)$1	1	129	159	12.7480
.((((((((((((.....((((((((((((	chr2:100017267-100017548(-)$1	1	14	44	12.4247
(..((.(((((((....))))))))).)))	chr10:79737022-79737324(-)$1	1	140	170	10.7181
...(((..(((((....)))))..))))))	chr20:49201082-49201327(+)$1	1	211	241	11.8139
(((....((((......))))....)))))	chr6:7251913-7252172(+)$1	1	164	194	12.6295
(((..((((((((....)))))...)))..	chr10:85912619-85912918(+)$1	1	127	157	11.7547
.((((((((((.........))))))))))	chr3:197510579-197510826(+)$1	1	52	82	14.4844
((((((...((((....))))....)))))	chr3:194123574-194123815(-)$1	1	135	165	14.8783
..(((((((.(((......))).)))))))	chr13:110406189-110406459(-)$1	1	67	97	12.9163
(..(((((((((......)))))))))..)	chr2:38522227-38522549(-)$1	1	37	67	14.4181
(..((....((((....))))....))..)	chr10:1085905-1086150(-)$1	1	189	219	10.7524
((((....(((((....)))))....).))	chr1:47141574-47141811(-)$1	1	131	161	10.6488
((((((((.((((....))))..)))))))	chr12:22842975-22843263(+)$1	1	46	76	14.7932
(.((((((((((...))))))))))(((((	chr2:96851667-96851924(-)$1	1	28	58	11.4064
((((.((.(((((....))))).)).))))	chr13:73333021-73333290(-)$1	1	39	69	10.9249
...(((((((.(((......))))))))))	chr16:50351717-50351976(+)$1	1	150	180	11.8103
)))).))))))))....)))))))))))))	chr12:131360950-131361194(+)$1	1	130	160	13.0130
.((((((((((((......)))))))))))	chr14:70238462-70238692(+)$1	1	69	99	16.1411
((((...(((.((....)).)))....)))	chr9:115166174-115166431(+)$1	1	70	100	12.5130

#PSSM
= : 0.22	i : 0.20	c : 0.14	d : 0.08	: : 0.06	g : 0.04	! : 0.04	" : 0.04	h : 0.02	b : 0.02	[ : 0.02	f : 0.02	D : 0.02	C : 0.02	# : 0.02	
= : 0.33	i : 0.22	! : 0.14	c : 0.06	d : 0.04	# : 0.04	g : 0.04	[ : 0.02	h : 0.02	f : 0.02	" : 0.02	: : 0.02	
= : 0.39	i : 0.20	! : 0.14	g : 0.08	" : 0.04	# : 0.04	c : 0.04	f : 0.02	d : 0.02	
= : 0.39	i : 0.20	g : 0.10	c : 0.06	! : 0.06	# : 0.04	b : 0.04	" : 0.02	[ : 0.02	f : 0.02	a : 0.02	
= : 0.39	i : 0.18	g : 0.10	c : 0.08	# : 0.06	" : 0.04	b : 0.04	f : 0.02	! : 0.02	[ : 0.02	] : 0.02	
= : 0.41	i : 0.18	c : 0.14	g : 0.10	# : 0.06	f : 0.02	[ : 0.02	b : 0.02	" : 0.02	
= : 0.39	g : 0.14	i : 0.12	! : 0.10	c : 0.08	" : 0.06	# : 0.06	b : 0.02	
= : 0.37	g : 0.14	i : 0.10	c : 0.10	! : 0.10	[ : 0.04	" : 0.04	# : 0.04	b : 0.02	d : 0.02	
= : 0.35	e : 0.14	g : 0.12	i : 0.08	" : 0.06	c : 0.06	[ : 0.04	b : 0.04	f : 0.02	a : 0.02	d : 0.02	# : 0.02	
= : 0.33	d : 0.14	e : 0.14	i : 0.08	g : 0.08	[ : 0.08	c : 0.06	" : 0.02	b : 0.02	f : 0.02	
= : 0.31	d : 0.14	e : 0.14	[ : 0.10	c : 0.10	i : 0.06	g : 0.06	" : 0.02	f : 0.02	q : 0.02	
= : 0.27	c : 0.16	e : 0.14	d : 0.12	i : 0.06	g : 0.04	r : 0.04	o : 0.04	[ : 0.02	f : 0.02	q : 0.02	a : 0.02	b : 0.02	
= : 0.22	c : 0.16	e : 0.14	d : 0.12	o : 0.08	i : 0.04	g : 0.04	q : 0.04	r : 0.04	a : 0.02	f : 0.02	l : 0.02	b : 0.02	
m : 0.47	o : 0.18	c : 0.08	l : 0.04	q : 0.04	r : 0.04	i : 0.02	n : 0.02	= : 0.02	f : 0.02	$ : 0.02	4 : 0.02	
m : 0.47	o : 0.20	l : 0.14	q : 0.04	r : 0.04	n : 0.02	= : 0.02	$ : 0.02	4 : 0.02	
m : 0.47	o : 0.20	l : 0.12	q : 0.04	n : 0.04	r : 0.04	$ : 0.02	= : 0.02	4 : 0.02	
m : 0.47	o : 0.20	l : 0.10	q : 0.04	n : 0.04	r : 0.04	g : 0.02	$ : 0.02	= : 0.02	4 : 0.02	
= : 0.18	o : 0.16	d : 0.14	e : 0.12	c : 0.10	g : 0.06	q : 0.04	n : 0.04	r : 0.04	i : 0.02	f : 0.02	$ : 0.02	b : 0.02	
= : 0.25	d : 0.14	o : 0.12	e : 0.12	c : 0.10	g : 0.06	i : 0.04	r : 0.04	q : 0.02	n : 0.02	f : 0.02	a : 0.02	b : 0.02	
= : 0.27	d : 0.14	c : 0.14	e : 0.12	i : 0.06	g : 0.06	r : 0.04	] : 0.04	q : 0.02	n : 0.02	a : 0.02	f : 0.02	o : 0.02	
= : 0.35	d : 0.14	] : 0.12	e : 0.12	i : 0.08	c : 0.08	g : 0.06	f : 0.02	
= : 0.35	c : 0.14	e : 0.12	i : 0.10	g : 0.06	4 : 0.06	3 : 0.04	b : 0.04	f : 0.02	a : 0.02	2 : 0.02	
= : 0.35	i : 0.10	c : 0.10	g : 0.08	2 : 0.08	4 : 0.08	3 : 0.06	] : 0.06	b : 0.04	f : 0.02	
= : 0.37	4 : 0.12	3 : 0.10	i : 0.10	g : 0.10	c : 0.08	2 : 0.08	b : 0.02	
= : 0.41	i : 0.14	4 : 0.12	3 : 0.06	g : 0.06	] : 0.04	2 : 0.04	c : 0.04	b : 0.04	f : 0.02	
= : 0.41	i : 0.18	c : 0.10	4 : 0.06	g : 0.06	3 : 0.04	f : 0.04	b : 0.04	2 : 0.02	] : 0.02	
= : 0.41	i : 0.20	g : 0.10	c : 0.08	] : 0.06	4 : 0.04	f : 0.04	b : 0.02	a : 0.02	
= : 0.41	i : 0.20	g : 0.12	c : 0.10	d : 0.04	f : 0.04	2 : 0.04	] : 0.02	
= : 0.39	i : 0.18	g : 0.12	d : 0.06	] : 0.06	c : 0.04	f : 0.04	2 : 0.04	e : 0.02	3 : 0.02	
= : 0.37	i : 0.16	c : 0.12	g : 0.10	d : 0.06	: : 0.04	f : 0.04	e : 0.02	h : 0.02	] : 0.02	3 : 0.02	

#score	647.6787825325247
#seq	48
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_UTR_m3_run1.txt

#BEAR
dddqqqqqqqqdddd	chr3:47452306-47452553(+)$1	247	43	58	13.0962
gggqqqqqqqqgggg	chr6:31236708-31236934(-)$1	226	197	212	12.8250
dddqqqqqqqqdddd	chr16:56465011-56465305(-)$1	294	209	224	13.0962
cccqqqqqqqqccc3	chr5:151042963-151043226(-)$1	263	99	114	13.9864
cccqqqqqqqqccc:	chr15:96874638-96874983(+)$1	345	192	207	13.1088
cccqqqqqqqqccc:	chr19:45323471-45323685(+)$1	214	153	168	13.1088
cccqqqqqqqqccc]	chr11:119533132-119533410(-)$1	278	191	206	13.9246
dddqqqqqqqqdddd	chr1:161191994-161192234(-)$1	240	140	155	13.0962
dddqqqqqqqqdddd	chr1:183113428-183113732(+)$1	304	69	84	13.0962
eeeqqqqqqqqeeee	chr22:36885096-36885395(-)$1	299	254	269	12.7226
cccqqqqqqqqcccD	chr6:34213499-34213743(+)$1	244	201	216	12.9654
dddqqqqqqqqdddd	chr6:42906813-42907068(+)$1	255	165	180	13.0962
#bbqqqqqqqqbb33	chr16:450344-450591(+)$1	247	164	179	12.6590
fffqqqqqqqqffff	chr11:119532625-119532911(-)$1	286	183	198	12.4158
cccqqqqqqqqccc]	chr20:31611324-31611565(+)$1	241	99	114	13.9246
[bbqqqqqqqqbb22	chr17:76988223-76988451(-)$1	228	189	204	12.2899
cccqqqqqqqqccc]	chr1:145523337-145523596(+)$1	259	94	109	13.9246
dddqqqqqqqqdddd	chr17:45727220-45727477(+)$1	257	126	141	13.0962
dddqqqqqqqqdddd	chr1:20301881-20302114(-)$1	233	128	143	13.0962
iiiqqqqqqqqiiii	chr15:75313195-75313507(+)$1	312	213	228	12.8117
fffqqqqqqqqffff	chr1:151221739-151222012(+)$1	273	11	26	12.4158
fffqqqqqqqqffff	chr1:151666787-151667081(+)$1	294	4	19	12.4158
cccqqqqqqqqccc2	chrX:153671591-153671871(+)$1	280	69	84	13.8051
cccqqqqqqqqccc:	chr12:69972129-69972407(+)$1	278	92	107	13.1088
c[aqqqqqqqqaccc	chr1:160061060-160061289(-)$1	229	187	202	13.2523
dddqqqqqqqqdddd	chr8:30669974-30670267(-)$1	293	138	153	13.0962
[bbqqqqqqqqbb]g	chr16:66978687-66979012(+)$1	325	56	71	12.4226
ccaqqqqqqqqa]cc	chr2:27001469-27001719(+)$1	250	113	128	13.1987
cccqqqqqqqqccc]	chr4:159046663-159046961(-)$1	298	278	293	13.9246
eeeqqqqqqqqeeee	chr10:121355948-121356279(-)$1	331	121	136	12.7226
eeeqqqqqqqqeeee	chrX:153671101-153671401(+)$1	300	265	280	12.7226
fffqqqqqqqqffff	chr19:41856675-41856973(-)$1	298	219	234	12.4158
fffqqqqqqqqffff	chr22:38062092-38062378(+)$1	286	11	26	12.4158
cccqqqqqqqqccc:	chr21:47706328-47706640(+)$1	312	41	56	13.1088
gggqqqqqqqqgggg	chr12:50494079-50494337(+)$1	258	148	163	12.8250
bbbqqqqqqqqbb]b	chr16:88697876-88698159(+)$1	283	7	22	11.9480
dddqqqqqqqqdddd	chr15:37390300-37390629(-)$1	329	238	253	13.0962
dddqqqqqqqqdddd	chr12:53845890-53846132(+)$1	242	101	116	13.0962
#bbqqqqqqqqbb44	chr12:7024644-7024885(+)$1	241	142	157	12.5415
dddqqqqqqqqdddd	chr11:72529262-72529565(+)$1	303	97	112	13.0962
ddaqqqqqqqqa]dd	chr17:80272958-80273290(-)$1	332	101	116	12.8827
cccqqqqqqqqccc3	chr19:13208421-13208686(+)$1	265	140	155	13.9864
"bbqqqqqqqqbb33	chr1:109235061-109235337(+)$1	276	104	119	12.6927
cccqqqqqqqqccc2	chr12:122239791-122240070(-)$1	279	195	210	13.8051
eeeqqqqqqqqeeee	chr16:57417255-57417510(+)$1	255	205	220	12.7226
cccqqqqqqqqccc:	chr16:58079912-58080152(+)$1	240	126	141	13.1088
fffqqqqqqqqffff	chr15:65620545-65620832(-)$1	287	255	270	12.4158
cccqqqqqqqqccc5	chr10:102745075-102745335(+)$1	260	25	40	13.2012
cccqqqqqqqqccc2	chr12:7024252-7024558(+)$1	306	73	88	13.8051
cccqqqqqqqqccc2	chr1:155300630-155300903(+)$1	273	157	172	13.8051
eeeqqqqqqqqeeee	chr17:42268441-42268719(+)$1	278	7	22	12.7226
cccqqqqqqqqccc3	chr16:67759288-67759588(-)$1	300	84	99	13.9864
#bbqqqqqqqqbb33	chr16:450409-450621(+)$1	212	99	114	12.6590
cccqqqqqqqqccc:	chr12:16035345-16035605(+)$1	260	115	130	13.1088
cccqqqqqqqqcccc	chrX:56592270-56592520(+)$1	250	26	41	13.7573
cccqqqqqqqqccc]	chr6:114292009-114292261(-)$1	252	229	244	13.9246
dddqqqqqqqqdddd	chr7:143079958-143080235(+)$1	277	91	106	13.0962
cccqqqqqqqqccc:	chr11:2159666-2159891(-)$1	225	79	94	13.1088
eeeqqqqqqqqeeee	chr15:75312141-75312441(+)$1	300	191	206	12.7226
cccqqqqqqqqccc:	chr11:2160248-2160466(-)$1	218	175	190	13.1088
[bbqqqqqqqqbb]b	chr17:27383361-27383646(+)$1	285	237	252	12.2213
eeeqqqqqqqqeeee	chr10:81114570-81114832(+)$1	262	184	199	12.7226
eeeqqqqqqqqeeee	chr16:72819874-72820133(-)$1	259	214	229	12.7226
eeeqqqqqqqqeeee	chr1:16266716-16266969(+)$1	253	214	229	12.7226
dddqqqqqqqqdddd	chr3:128533313-128533558(+)$1	245	128	143	13.0962
dddqqqqqqqqdddd	chr12:56386197-56386521(+)$1	324	119	134	13.0962
cccqqqqqqqqccc]	chr16:29999530-29999789(+)$1	259	10	25	13.9246
"bbqqqqqqqqbb33	chr8:8175492-8175763(-)$1	271	129	144	12.6927
eeeqqqqqqqqeeee	chr14:94187061-94187333(-)$1	272	148	163	12.7226

#otherMatches

#Seq PSSM
GUCCCGCUCAAGACC	chr3:47452306-47452553(+)$1	247	43	58	13.0962
UUCCUGUUCCAGAGA	chr6:31236708-31236934(-)$1	226	197	212	12.8250
GCUCAUCCAUUAGCU	chr16:56465011-56465305(-)$1	294	209	224	13.0962
ACUCCUUCCACAGUA	chr5:151042963-151043226(-)$1	263	99	114	13.9864
GCCAACUCCUCGGCU	chr15:96874638-96874983(+)$1	345	192	207	13.1088
agccuccccaagcuc	chr19:45323471-45323685(+)$1	214	153	168	13.1088
CAGCCAAAGCACUGA	chr11:119533132-119533410(-)$1	278	191	206	13.9246
CUGAAUGAAUCCAGC	chr1:161191994-161192234(-)$1	240	140	155	13.0962
AAUGACACUCUGUUC	chr1:183113428-183113732(+)$1	304	69	84	13.0962
ACCAUGUGUAAGGUG	chr22:36885096-36885395(-)$1	299	254	269	12.7226
AUGUUCAUCCUCAUU	chr6:34213499-34213743(+)$1	244	201	216	12.9654
GAGUAAAAAUGUUCU	chr6:42906813-42907068(+)$1	255	165	180	13.0962
UCUGUACCCCAAGCC	chr16:450344-450591(+)$1	247	164	179	12.6590
CUAAUGUGUAAUAGA	chr11:119532625-119532911(-)$1	286	183	198	12.4158
cugccccaccccAGC	chr20:31611324-31611565(+)$1	241	99	114	13.9246
CCCUCUCUCAUGGUU	chr17:76988223-76988451(-)$1	228	189	204	12.2899
GCACCACAAGUUGUU	chr1:145523337-145523596(+)$1	259	94	109	13.9246
AGCACCAGCGCGCUC	chr17:45727220-45727477(+)$1	257	126	141	13.0962
CUUAACCAAAGAAGC	chr1:20301881-20302114(-)$1	233	128	143	13.0962
CCAUGACCUGUUGGA	chr15:75313195-75313507(+)$1	312	213	228	12.8117
GAAGGAAAGAAUUCU	chr1:151221739-151222012(+)$1	273	11	26	12.4158
UCCAGAUAAGAGGAG	chr1:151666787-151667081(+)$1	294	4	19	12.4158
GGGAAAACGGACCCA	chrX:153671591-153671871(+)$1	280	69	84	13.8051
UGCCCAAACCAGCAC	chr12:69972129-69972407(+)$1	278	92	107	13.1088
GACUGUAAAACGCUC	chr1:160061060-160061289(-)$1	229	187	202	13.2523
GCCGCCUGCUGGGCU	chr8:30669974-30670267(-)$1	293	138	153	13.0962
AUCCCCCCACUGAGC	chr16:66978687-66979012(+)$1	325	56	71	12.4226
AGCCCCCACAAGCCU	chr2:27001469-27001719(+)$1	250	113	128	13.1987
GGAGACUGGAAUCCU	chr4:159046663-159046961(-)$1	298	278	293	13.9246
uccuccuGGUUGGAG	chr10:121355948-121356279(-)$1	331	121	136	12.7226
AACUCUCGCGUGUUG	chrX:153671101-153671401(+)$1	300	265	280	12.7226
GUUUGCUGAGUAACC	chr19:41856675-41856973(-)$1	298	219	234	12.4158
GGCCUGACCCAGCCA	chr22:38062092-38062378(+)$1	286	11	26	12.4158
CGCAUUCACCCGCGU	chr21:47706328-47706640(+)$1	312	41	56	13.1088
UUGACACUGGACAAC	chr12:50494079-50494337(+)$1	258	148	163	12.8250
CCUCCCUCCCCAGAG	chr16:88697876-88698159(+)$1	283	7	22	11.9480
CUGCCCCAUUACGGC	chr15:37390300-37390629(-)$1	329	238	253	13.0962
GGGUCUCUUUCcccc	chr12:53845890-53846132(+)$1	242	101	116	13.0962
UGACCUUCUCCUCUU	chr12:7024644-7024885(+)$1	241	142	157	12.5415
ccaugcucuccuggu	chr11:72529262-72529565(+)$1	303	97	112	13.0962
GGCCCCUGCACGUCC	chr17:80272958-80273290(-)$1	332	101	116	12.8827
CAGACGCCAACUUGA	chr19:13208421-13208686(+)$1	265	140	155	13.9864
UGGCCCCCUCccccc	chr1:109235061-109235337(+)$1	276	104	119	12.6927
ACUGGAAAACAAGUC	chr12:122239791-122240070(-)$1	279	195	210	13.8051
UGUCUUUUCUUGCAU	chr16:57417255-57417510(+)$1	255	205	220	12.7226
CUGCCUCACCACGGA	chr16:58079912-58080152(+)$1	240	126	141	13.1088
UGUGAAAGAAAAUGU	chr15:65620545-65620832(-)$1	287	255	270	12.4158
UCAAUUCUGACUGAG	chr10:102745075-102745335(+)$1	260	25	40	13.2012
GGGAGGACAGGCCCA	chr12:7024252-7024558(+)$1	306	73	88	13.8051
UGAUAAUGUACUCAC	chr1:155300630-155300903(+)$1	273	157	172	13.8051
GGAUGUCAUCUUCCU	chr17:42268441-42268719(+)$1	278	7	22	12.7226
UGGCCAGCACACUAU	chr16:67759288-67759588(-)$1	300	84	99	13.9864
UCUGUACCCCAAGCC	chr16:450409-450621(+)$1	212	99	114	12.6590
UGACCCCUCCCUCAC	chr12:16035345-16035605(+)$1	260	115	130	13.1088
UAGUUGUAAGUCUAA	chrX:56592270-56592520(+)$1	250	26	41	13.7573
ACUACUACGACGGUG	chr6:114292009-114292261(-)$1	252	229	244	13.9246
ACACAGUUCCAUGUU	chr7:143079958-143080235(+)$1	277	91	106	13.0962
gcccucucuucggcc	chr11:2159666-2159891(-)$1	225	79	94	13.1088
GGCUUGAUUCUGCUA	chr15:75312141-75312441(+)$1	300	191	206	12.7226
GCUCCCCCUCCAGCC	chr11:2160248-2160466(-)$1	218	175	190	13.1088
UGAUCAGAUAUUCUA	chr17:27383361-27383646(+)$1	285	237	252	12.2213
uuguccccagccaaa	chr10:81114570-81114832(+)$1	262	184	199	12.7226
UUCAUUUCUUAGAGG	chr16:72819874-72820133(-)$1	259	214	229	12.7226
UAUUAAAAAAUAUAA	chr1:16266716-16266969(+)$1	253	214	229	12.7226
AUAUUGCCCAUUAUU	chr3:128533313-128533558(+)$1	245	128	143	13.0962
GUGUUCCUCCCCAUU	chr12:56386197-56386521(+)$1	324	119	134	13.0962
GUGCUCAUCCUCACC	chr16:29999530-29999789(+)$1	259	10	25	13.9246
AACCCUUUCCUGUCU	chr8:8175492-8175763(-)$1	271	129	144	12.6927
GGCUCCUGACUGCCU	chr14:94187061-94187333(-)$1	272	148	163	12.7226

#DB
(((........))))	chr3:47452306-47452553(+)$1	1	43	58	13.0962
(((........))))	chr6:31236708-31236934(-)$1	1	197	212	12.8250
(((........))))	chr16:56465011-56465305(-)$1	1	209	224	13.0962
(((........))).	chr5:151042963-151043226(-)$1	1	99	114	13.9864
(((........))).	chr15:96874638-96874983(+)$1	1	192	207	13.1088
(((........))).	chr19:45323471-45323685(+)$1	1	153	168	13.1088
(((........))).	chr11:119533132-119533410(-)$1	1	191	206	13.9246
(((........))))	chr1:161191994-161192234(-)$1	1	140	155	13.0962
(((........))))	chr1:183113428-183113732(+)$1	1	69	84	13.0962
(((........))))	chr22:36885096-36885395(-)$1	1	254	269	12.7226
(((........))))	chr6:34213499-34213743(+)$1	1	201	216	12.9654
(((........))))	chr6:42906813-42907068(+)$1	1	165	180	13.0962
.((........))..	chr16:450344-450591(+)$1	1	164	179	12.6590
(((........))))	chr11:119532625-119532911(-)$1	1	183	198	12.4158
(((........))).	chr20:31611324-31611565(+)$1	1	99	114	13.9246
.((........))..	chr17:76988223-76988451(-)$1	1	189	204	12.2899
(((........))).	chr1:145523337-145523596(+)$1	1	94	109	13.9246
(((........))))	chr17:45727220-45727477(+)$1	1	126	141	13.0962
(((........))))	chr1:20301881-20302114(-)$1	1	128	143	13.0962
(((........))))	chr15:75313195-75313507(+)$1	1	213	228	12.8117
(((........))))	chr1:151221739-151222012(+)$1	1	11	26	12.4158
(((........))))	chr1:151666787-151667081(+)$1	1	4	19	12.4158
(((........))).	chrX:153671591-153671871(+)$1	1	69	84	13.8051
(((........))).	chr12:69972129-69972407(+)$1	1	92	107	13.1088
(.(........))))	chr1:160061060-160061289(-)$1	1	187	202	13.2523
(((........))))	chr8:30669974-30670267(-)$1	1	138	153	13.0962
.((........)).)	chr16:66978687-66979012(+)$1	1	56	71	12.4226
(((........).))	chr2:27001469-27001719(+)$1	1	113	128	13.1987
(((........))).	chr4:159046663-159046961(-)$1	1	278	293	13.9246
(((........))))	chr10:121355948-121356279(-)$1	1	121	136	12.7226
(((........))))	chrX:153671101-153671401(+)$1	1	265	280	12.7226
(((........))))	chr19:41856675-41856973(-)$1	1	219	234	12.4158
(((........))))	chr22:38062092-38062378(+)$1	1	11	26	12.4158
(((........))).	chr21:47706328-47706640(+)$1	1	41	56	13.1088
(((........))))	chr12:50494079-50494337(+)$1	1	148	163	12.8250
(((........)).)	chr16:88697876-88698159(+)$1	1	7	22	11.9480
(((........))))	chr15:37390300-37390629(-)$1	1	238	253	13.0962
(((........))))	chr12:53845890-53846132(+)$1	1	101	116	13.0962
.((........))..	chr12:7024644-7024885(+)$1	1	142	157	12.5415
(((........))))	chr11:72529262-72529565(+)$1	1	97	112	13.0962
(((........).))	chr17:80272958-80273290(-)$1	1	101	116	12.8827
(((........))).	chr19:13208421-13208686(+)$1	1	140	155	13.9864
.((........))..	chr1:109235061-109235337(+)$1	1	104	119	12.6927
(((........))).	chr12:122239791-122240070(-)$1	1	195	210	13.8051
(((........))))	chr16:57417255-57417510(+)$1	1	205	220	12.7226
(((........))).	chr16:58079912-58080152(+)$1	1	126	141	13.1088
(((........))))	chr15:65620545-65620832(-)$1	1	255	270	12.4158
(((........))).	chr10:102745075-102745335(+)$1	1	25	40	13.2012
(((........))).	chr12:7024252-7024558(+)$1	1	73	88	13.8051
(((........))).	chr1:155300630-155300903(+)$1	1	157	172	13.8051
(((........))))	chr17:42268441-42268719(+)$1	1	7	22	12.7226
(((........))).	chr16:67759288-67759588(-)$1	1	84	99	13.9864
.((........))..	chr16:450409-450621(+)$1	1	99	114	12.6590
(((........))).	chr12:16035345-16035605(+)$1	1	115	130	13.1088
(((........))))	chrX:56592270-56592520(+)$1	1	26	41	13.7573
(((........))).	chr6:114292009-114292261(-)$1	1	229	244	13.9246
(((........))))	chr7:143079958-143080235(+)$1	1	91	106	13.0962
(((........))).	chr11:2159666-2159891(-)$1	1	79	94	13.1088
(((........))))	chr15:75312141-75312441(+)$1	1	191	206	12.7226
(((........))).	chr11:2160248-2160466(-)$1	1	175	190	13.1088
.((........)).)	chr17:27383361-27383646(+)$1	1	237	252	12.2213
(((........))))	chr10:81114570-81114832(+)$1	1	184	199	12.7226
(((........))))	chr16:72819874-72820133(-)$1	1	214	229	12.7226
(((........))))	chr1:16266716-16266969(+)$1	1	214	229	12.7226
(((........))))	chr3:128533313-128533558(+)$1	1	128	143	13.0962
(((........))))	chr12:56386197-56386521(+)$1	1	119	134	13.0962
(((........))).	chr16:29999530-29999789(+)$1	1	10	25	13.9246
.((........))..	chr8:8175492-8175763(-)$1	1	129	144	12.6927
(((........))))	chr14:94187061-94187333(-)$1	1	148	163	12.7226

#PSSM
c : 0.37	d : 0.21	e : 0.14	f : 0.08	# : 0.04	[ : 0.04	g : 0.02	" : 0.02	i : 0.01	b : 0.01	
c : 0.36	d : 0.21	e : 0.14	b : 0.13	f : 0.08	g : 0.02	i : 0.01	[ : 0.01	
c : 0.34	d : 0.20	e : 0.14	b : 0.13	f : 0.08	a : 0.04	g : 0.02	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.34	d : 0.20	e : 0.14	b : 0.13	f : 0.08	a : 0.04	g : 0.02	i : 0.01	
c : 0.36	d : 0.20	e : 0.14	b : 0.13	f : 0.08	g : 0.02	] : 0.02	i : 0.01	
c : 0.37	d : 0.21	e : 0.14	f : 0.08	3 : 0.05	] : 0.04	g : 0.02	2 : 0.01	i : 0.01	4 : 0.01	
d : 0.21	e : 0.14	: : 0.11	3 : 0.10	] : 0.08	f : 0.08	2 : 0.07	g : 0.04	c : 0.04	b : 0.02	D : 0.01	i : 0.01	4 : 0.01	5 : 0.01	

#score	900.5141220643037
#seq	69
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_CDS_m3_run1.txt

#BEAR
ffff[a!!ddddmmmmdddd]afffff	chr8:144940558-144940891(-)$1	333	58	85	13.8342
[a!!bbbbddddmmmmdddd22bb]bb	chr7:2394448-2394708(+)$1	260	148	175	13.8445
ccc[ccceeeeemmmmeeeee]ccccc	chr9:116999867-117000095(+)$1	228	23	50	12.7475
ee!!ccc!!cccmmmmccc22ccc22e	chr2:232325086-232325378(-)$1	292	245	272	12.8622
cccccc[ddddnnnnndddd]ccc]cc	chr2:232327809-232328119(-)$1	310	197	224	12.4870
cc[ccc!!ddddmmmmdddd4444ccc	chr9:117002396-117002646(+)$1	250	86	113	15.4947
"""ggggggg[ammmma]gggggggcc	chr20:17610392-17610688(-)$1	296	250	277	11.7432

#otherMatches

#Seq PSSM
CUCCAGGACCUGGAAACGGGACGGAGC	chr8:144940558-144940891(-)$1	333	58	85	13.8342
AGGAGCGCGCCGAGCCCGGCCAGCAGC	chr7:2394448-2394708(+)$1	260	148	175	13.8445
GGAAGGUGGGGUCCUCACCCCUGCCUC	chr9:116999867-117000095(+)$1	228	23	50	12.7475
CAAAGGGACUUAAUACUGAAACCUGAU	chr2:232325086-232325378(-)$1	292	245	272	12.8622
AGUGGAGAAGAGGUAAUUUUAUCCAAC	chr2:232327809-232328119(-)$1	310	197	224	12.4870
UCUCUGCUUCCCCUCAGGGAUUCCCAG	chr9:117002396-117002646(+)$1	250	86	113	15.4947
UCAGUGCAGGGUGCUGGGUCUGCAUGC	chr20:17610392-17610688(-)$1	296	250	277	11.7432

#DB
((((.(..((((....)))).))))))	chr8:144940558-144940891(-)$1	1	58	85	13.8342
.(..((((((((....))))..)).))	chr7:2394448-2394708(+)$1	1	148	175	13.8445
(((.((((((((....))))).)))))	chr9:116999867-117000095(+)$1	1	23	50	12.7475
((..(((..(((....)))..)))..)	chr2:232325086-232325378(-)$1	1	245	272	12.8622
((((((.((((.....)))).))).))	chr2:232327809-232328119(-)$1	1	197	224	12.4870
((.(((..((((....))))....)))	chr9:117002396-117002646(+)$1	1	86	113	15.4947
...(((((((.(....).)))))))))	chr20:17610392-17610688(-)$1	1	250	277	11.7432

#PSSM
c : 0.42	f : 0.14	[ : 0.14	e : 0.14	" : 0.14	
c : 0.42	f : 0.14	a : 0.14	e : 0.14	" : 0.14	
! : 0.28	c : 0.28	f : 0.14	[ : 0.14	" : 0.14	
! : 0.28	c : 0.28	f : 0.14	[ : 0.14	g : 0.14	
c : 0.57	[ : 0.14	b : 0.14	g : 0.14	
c : 0.57	a : 0.14	b : 0.14	g : 0.14	
! : 0.28	c : 0.28	b : 0.14	[ : 0.14	g : 0.14	
! : 0.42	b : 0.14	e : 0.14	d : 0.14	g : 0.14	
d : 0.57	e : 0.14	! : 0.14	g : 0.14	
d : 0.57	e : 0.14	c : 0.14	g : 0.14	
d : 0.57	e : 0.14	c : 0.14	[ : 0.14	
d : 0.42	e : 0.14	c : 0.14	n : 0.14	a : 0.14	
m : 0.85	n : 0.14	
m : 0.85	n : 0.14	
m : 0.85	n : 0.14	
m : 0.85	n : 0.14	
d : 0.57	e : 0.14	c : 0.14	a : 0.14	
d : 0.57	e : 0.14	c : 0.14	] : 0.14	
d : 0.57	e : 0.14	c : 0.14	g : 0.14	
d : 0.57	e : 0.14	2 : 0.14	g : 0.14	
] : 0.28	2 : 0.28	e : 0.14	4 : 0.14	g : 0.14	
c : 0.28	a : 0.14	2 : 0.14	] : 0.14	4 : 0.14	g : 0.14	
c : 0.42	f : 0.14	b : 0.14	4 : 0.14	g : 0.14	
c : 0.42	f : 0.14	b : 0.14	4 : 0.14	g : 0.14	
] : 0.28	c : 0.28	f : 0.14	2 : 0.14	g : 0.14	
c : 0.57	f : 0.14	b : 0.14	2 : 0.14	
c : 0.57	f : 0.14	b : 0.14	e : 0.14	

#score	93.01362144568569
#seq	7
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_CDS_m2_run2.txt

#BEAR
ffffffvvvvvvvvvvvvvffff	chr8:41476372-41476635(+)$1	263	96	119	21.3471
ccc[bbyyyyyyyyyyyyyyyyb	chr2:27656682-27656981(+)$1	299	245	268	20.4553
!!dddduuuuuuuuuuuudddd2	chr19:54646754-54646991(+)$1	237	114	137	23.2877
[eeeeeyyyyyyyyyyyyyyyye	chrX:117722196-117722557(+)$1	361	38	61	21.6321
fff!!bbtttttttttttbb22f	chr15:50866909-50867211(-)$1	302	41	64	19.8148
eeeeeyyyyyyyyyyyyyyyyee	chr1:43825008-43825274(+)$1	266	167	190	21.5065
h[ddddvvvvvvvvvvvvvdddd	chr16:67693002-67693334(-)$1	332	8	31	22.5339
ffffbbuuuuuuuuuuuubb333	chr11:108040399-108040722(-)$1	323	202	225	21.8150
!bbddddtttttttttttdddd]	chr12:56645735-56646027(-)$1	292	148	171	20.8790
!eeeeewwwwwwwwwwwwwweee	chr11:68358032-68358278(+)$1	246	108	131	22.3977
eeeeevvvvvvvvvvvvveeeee	chr2:160104717-160104997(-)$1	280	0	23	22.0433
!!dddduuuuuuuuuuuudddd2	chr5:38962294-38962563(-)$1	269	111	134	23.2877
ggggggwwwwwwwwwwwwwwggg	chr3:52723121-52723400(+)$1	279	81	104	22.0409
e[ddddvvvvvvvvvvvvvdddd	chr5:130498061-130498334(-)$1	273	13	36	22.6005
##dddduuuuuuuuuuuudddd3	chr2:27257891-27258125(+)$1	234	196	219	23.1671
eeddddtttttttttttdddd]e	chr10:5762572-5762852(+)$1	280	136	159	21.5225
ffffffuuuuuuuuuuuufffff	chr17:4585642-4585921(-)$1	279	136	159	21.7981
gggggguuuuuuuuuuuuggggg	chr2:97531032-97531292(-)$1	260	21	44	23.0489
iiiiiiyyyyyyyyyyyyyyyyi	chr8:29923274-29923554(-)$1	280	52	75	21.2913
[fffffftttttttttttfffff	chrX:154300482-154300748(+)$1	266	44	67	20.2633
gggggguuuuuuuuuuuuggggg	chr4:71824649-71824972(+)$1	323	94	117	23.0489
ddddbbvvvvvvvvvvvvvbb]d	chr11:244030-244358(+)$1	328	252	275	21.3586
beeeeeuuuuuuuuuuuueeeee	chr9:131029692-131029980(-)$1	288	16	39	23.1413
!!ddddxxxxxxxxxxxxxxxdd	chr11:66611283-66611528(+)$1	245	142	165	18.3477
gggggggtttttttttttggggg	chr12:112845990-112846296(-)$1	306	241	264	21.1196
[eeeeevvvvvvvvvvvvveeee	chr17:74732094-74732346(-)$1	252	9	32	22.9642
hhhhhhwwwwwwwwwwwwwwhhh	chr12:53345358-53345638(+)$1	280	5	28	20.5402
ggggggvvvvvvvvvvvvvgggg	chr7:128633727-128633989(-)$1	262	178	201	22.5611
c[cccyyyyyyyyyyyyyyyycc	chr7:6513656-6513936(-)$1	280	227	250	21.4038
:eeeeeuuuuuuuuuuuueeeee	chrX:153587639-153587902(-)$1	263	184	207	22.4770
a[ddddvvvvvvvvvvvvvdddd	chr6:31727002-31727338(+)$1	336	152	175	22.6487
hh[cccuuuuuuuuuuuuccc]h	chr11:43421489-43421811(+)$1	322	213	236	22.8420
ccddddvvvvvvvvvvvvvdddd	chr1:43305596-43305848(+)$1	252	169	192	22.4314
eeeeeeuuuuuuuuuuuueeeee	chr2:201681856-201682150(+)$1	294	47	70	23.3230
:eeeeettttttttttteeeee:	chr12:124092040-124092359(+)$1	319	86	109	19.8899
======wwwwwwwwwwwwww===	chr4:79766002-79766338(+)$1	336	289	312	22.0321
Geeeeeuuuuuuuuuuuueeeee	chr10:1046764-1047066(+)$1	302	278	301	22.9258
###cccuuuuuuuuuuuuccchh	chr19:13051445-13051695(+)$1	250	211	234	22.7565
ddddwwwwwwwwwwwwwwddddJ	chr21:40720111-40720358(-)$1	247	208	231	19.2222
c[cccwwwwwwwwwwwwwwccc3	chr11:27405757-27406023(-)$1	266	210	233	21.8952
ggggggwwwwwwwwwwwwwwggg	chr17:62499335-62499607(-)$1	272	119	142	22.0409
&eeeeeuuuuuuuuuuuueeeee	chr1:47758938-47759251(-)$1	313	199	222	22.8448
$$$ccctttttttttttcccccc	chr1:196642127-196642429(+)$1	302	59	82	20.8936
:eeeeettttttttttteeeee:	chr17:38572516-38572789(-)$1	273	248	271	19.8899
d[ddddtttttttttttdddd]d	chr2:113410329-113410600(+)$1	271	117	140	21.4731
hhhhhhuuuuuuuuuuuuhhhhh	chr22:29668057-29668409(+)$1	352	53	76	21.1187
eee[bbuuuuuuuuuuuubb333	chr16:70582214-70582524(+)$1	310	32	55	22.2190
JJdddduuuuuuuuuuuudddd:	chrX:122778398-122778681(-)$1	283	219	242	19.1989
"eeeeeuuuuuuuuuuuueeeee	chr1:44423741-44424071(+)$1	330	202	225	23.4528
======vvvvvvvvvvvvv====	chr6:33248195-33248528(-)$1	333	15	38	22.5768
g[ddddtttttttttttdddd]g	chr6:30675216-30675523(-)$1	307	57	80	21.7898
gg[cccuuuuuuuuuuuucccgg	chr3:184556395-184556728(+)$1	333	34	57	23.3816
hhhhhhuuuuuuuuuuuuhhhhh	chr20:13767785-13768098(+)$1	313	220	243	21.1187
ddddwwwwwwwwwwwwwwdddd:	chr16:88871977-88872235(+)$1	258	135	158	19.7685
eeeeexxxxxxxxxxxxxxxeee	chr1:113642992-113643295(+)$1	303	265	288	18.2286
&&eeeeettttttttttteeeee	chr2:111425258-111425529(-)$1	271	152	175	20.3789
ddd[bbyyyyyyyyyyyyyyyyb	chr14:21461223-21461558(+)$1	335	68	91	20.3023
ee[cccuuuuuuuuuuuuccc]e	chr5:179044509-179044746(-)$1	237	27	50	23.2492
h[ddddyyyyyyyyyyyyyyyyd	chr3:140681931-140682245(+)$1	314	263	286	21.2662
fbbcccvvvvvvvvvvvvvccc]	chr11:118963483-118963772(+)$1	289	193	216	21.8467
fffffftttttttttttffffff	chr6:30557353-30557607(+)$1	254	100	123	20.0850
ggggggvvvvvvvvvvvvvgggg	chr18:47812286-47812553(-)$1	267	182	205	22.5611
[cccxxxxxxxxxxxxxxxcccb	chr4:727651-727937(+)$1	286	66	89	17.5150

#otherMatches

#Seq PSSM
GGCAGGGAGGACUUGUGGACCUG	chr8:41476372-41476635(+)$1	263	96	119	21.3471
UGGGCUGACAUUAAAGAGAACAA	chr2:27656682-27656981(+)$1	299	245	268	20.4553
UGCCUCAAGAAGGUGUCCGAGGG	chr19:54646754-54646991(+)$1	237	114	137	23.2877
AUGUAUAUCCCCUGCAAUUAAAA	chrX:117722196-117722557(+)$1	361	38	61	21.6321
GGUCAGAACAUGAUAUCCUCAAA	chr15:50866909-50867211(-)$1	302	41	64	19.8148
AGGUUCAGACCACUCCUAGCAAA	chr1:43825008-43825274(+)$1	266	167	190	21.5065
UUAGCAACCAAGACUUAGAUGUU	chr16:67693002-67693334(-)$1	332	8	31	22.5339
CCCUCCAAAAUCUCAGAAGGCUC	chr11:108040399-108040722(-)$1	323	202	225	21.8150
AGCGGAACCCCAUACACCUUCCA	chr12:56645735-56646027(-)$1	292	148	171	20.8790
CGAGUAUCAGACAUCAACUUUAC	chr11:68358032-68358278(+)$1	246	108	131	22.3977
CUGAGGAAAAUUGAAGAGCUCAG	chr2:160104717-160104997(-)$1	280	0	23	22.0433
AAAUCUAAGAAACUAUAAAGAUG	chr5:38962294-38962563(-)$1	269	111	134	23.2877
ACUUAUAUUAAAUAAAUCAGGUG	chr3:52723121-52723400(+)$1	279	81	104	22.0409
GUGAUACCCAAGAAACAUAUAUC	chr5:130498061-130498334(-)$1	273	13	36	22.6005
CCAGCUAUCUCAACUACAAGCUA	chr2:27257891-27258125(+)$1	234	196	219	23.1671
UUCUGCUAGACUUGAACGCAGUG	chr10:5762572-5762852(+)$1	280	136	159	21.5225
UGCACUCUUCUCCCCACCAGUGU	chr17:4585642-4585921(-)$1	279	136	159	21.7981
AUGCUCACCUUCACUUUGGAGCA	chr2:97531032-97531292(-)$1	260	21	44	23.0489
UAAGAGCAAAAAAUACAAGUUCC	chr8:29923274-29923554(-)$1	280	52	75	21.2913
UCAUAUAAUCUGCAUCCAUAUAU	chrX:154300482-154300748(+)$1	266	44	67	20.2633
GGUUGCAGUUAACAGUAAGUAGC	chr4:71824649-71824972(+)$1	323	94	117	23.0489
CUGAACUUUUGUGUUUUCUGUAU	chr11:244030-244358(+)$1	328	252	275	21.3586
GAUGGUGGGGAAAUAAGAACCAU	chr9:131029692-131029980(-)$1	288	16	39	23.1413
GCCAGGCACAUCCCUGCUCACCC	chr11:66611283-66611528(+)$1	245	142	165	18.3477
CUUCGCAAAAUGGUAAGAUGUGG	chr12:112845990-112846296(-)$1	306	241	264	21.1196
GUCCUCCCCCAGUGUCCAAGAGG	chr17:74732094-74732346(-)$1	252	9	32	22.9642
CGGGCCCAAUAUGACGAGCUGGC	chr12:53345358-53345638(+)$1	280	5	28	20.5402
AUUCACUUCUGUGUCUUCUGUGA	chr7:128633727-128633989(-)$1	262	178	201	22.5611
AUGUCUUAAUAUGCUGUUCUUGA	chr7:6513656-6513936(-)$1	280	227	250	21.4038
UGUCCUGCAUGGAUAACAAGGAC	chrX:153587639-153587902(-)$1	263	184	207	22.4770
GAGGACCAAGAGAUGCAAAGUCC	chr6:31727002-31727338(+)$1	336	152	175	22.6487
UUAUGACUUCCCUACAUCUCGAA	chr11:43421489-43421811(+)$1	322	213	236	22.8420
UCCUGUUGCCCUAAUAUUUGCAG	chr1:43305596-43305848(+)$1	252	169	192	22.4314
AAUGGAACACUUAAUGCAUCCAU	chr2:201681856-201682150(+)$1	294	47	70	23.3230
AGGCUGUUUUCUUGUUGUAGCCA	chr12:124092040-124092359(+)$1	319	86	109	19.8899
AUUUCAUUUAUAGAUUUCUUUGA	chr4:79766002-79766338(+)$1	336	289	312	22.0321
CAAUACUAGUCCACAAUUGUAUU	chr10:1046764-1047066(+)$1	302	278	301	22.9258
UAUGCCUAUGAUAACUUUGGCGU	chr19:13051445-13051695(+)$1	250	211	234	22.7565
UCCAUUUUGAUUAGCUAUUGGAG	chr21:40720111-40720358(-)$1	247	208	231	19.2222
AAAAGAAAAAAAUAUUGGCCUUA	chr11:27405757-27406023(-)$1	266	210	233	21.8952
ACACUUACGUAUUUAAUUAAAGG	chr17:62499335-62499607(-)$1	272	119	142	22.0409
AUGUAAUGCCGUAACCUUUUACA	chr1:47758938-47759251(-)$1	313	199	222	22.8448
CCAGGCUAUCUAUAAAUGCCGCC	chr1:196642127-196642429(+)$1	302	59	82	20.8936
CUGUCAUUUCAAUCAGUUGAUAA	chr17:38572516-38572789(-)$1	273	248	271	19.8899
ACCCCUUUUUGCUUUACAGGGCU	chr2:113410329-113410600(+)$1	271	117	140	21.4731
GAAUUCUUCCUGCCACGUGAAUU	chr22:29668057-29668409(+)$1	352	53	76	21.1187
CUGUGGCUUCCCUCUUCUCCUGU	chr16:70582214-70582524(+)$1	310	32	55	22.2190
AAGCUCAAACAAUAGACAGAGCC	chrX:122778398-122778681(-)$1	283	219	242	19.1989
CGGCUCAAAAGUUUCUAGGGGUC	chr1:44423741-44424071(+)$1	330	202	225	23.4528
GCCCCUUUGAAGAUGUGCUGGGG	chr6:33248195-33248528(-)$1	333	15	38	22.5768
AGCCCAACACCAGAGCCUGGGGU	chr6:30675216-30675523(-)$1	307	57	80	21.7898
CAAGAGCCAUAUACCAUUUUCUG	chr3:184556395-184556728(+)$1	333	34	57	23.3816
GUGGUGAUCAUAAUACAAUACCA	chr20:13767785-13768098(+)$1	313	220	243	21.1187
CGCCCCCAUCCUCCCAUAGGCGU	chr16:88871977-88872235(+)$1	258	135	158	19.7685
GGCUAGAGGUAAUUUUAAAAUAG	chr1:113642992-113643295(+)$1	303	265	288	18.2286
AUAUGCAAGUAUAAUCAGUGCAU	chr2:111425258-111425529(-)$1	271	152	175	20.3789
CCAGCAUUUCAGCCACAAACUUU	chr14:21461223-21461558(+)$1	335	68	91	20.3023
UAGAAAUUUUAGGUUUUUUUUGU	chr5:179044509-179044746(-)$1	237	27	50	23.2492
UUUAUCGAUAUAAACCAAAUUAG	chr3:140681931-140682245(+)$1	314	263	286	21.2662
CGGCUCAGAUAGCAUACAAGAGA	chr11:118963483-118963772(+)$1	289	193	216	21.8467
UUCCCUUGCAGACCCAUGGGGAA	chr6:30557353-30557607(+)$1	254	100	123	20.0850
AAUGGAUGUGUAAAGUGGUUCCG	chr18:47812286-47812553(-)$1	267	182	205	22.5611
UCUUGAAGAUAAGUCAGAAAAGU	chr4:727651-727937(+)$1	286	66	89	17.5150

#DB
((((((.............))))	chr8:41476372-41476635(+)$1	1	96	119	21.3471
(((.((................)	chr2:27656682-27656981(+)$1	1	245	268	20.4553
..((((............)))).	chr19:54646754-54646991(+)$1	1	114	137	23.2877
.(((((................)	chrX:117722196-117722557(+)$1	1	38	61	21.6321
(((..((...........))..)	chr15:50866909-50867211(-)$1	1	41	64	19.8148
(((((................))	chr1:43825008-43825274(+)$1	1	167	190	21.5065
(.((((.............))))	chr16:67693002-67693334(-)$1	1	8	31	22.5339
((((((............))...	chr11:108040399-108040722(-)$1	1	202	225	21.8150
.((((((...........)))).	chr12:56645735-56646027(-)$1	1	148	171	20.8790
.(((((..............)))	chr11:68358032-68358278(+)$1	1	108	131	22.3977
(((((.............)))))	chr2:160104717-160104997(-)$1	1	0	23	22.0433
..((((............)))).	chr5:38962294-38962563(-)$1	1	111	134	23.2877
((((((..............)))	chr3:52723121-52723400(+)$1	1	81	104	22.0409
(.((((.............))))	chr5:130498061-130498334(-)$1	1	13	36	22.6005
..((((............)))).	chr2:27257891-27258125(+)$1	1	196	219	23.1671
((((((...........)))).)	chr10:5762572-5762852(+)$1	1	136	159	21.5225
((((((............)))))	chr17:4585642-4585921(-)$1	1	136	159	21.7981
((((((............)))))	chr2:97531032-97531292(-)$1	1	21	44	23.0489
((((((................)	chr8:29923274-29923554(-)$1	1	52	75	21.2913
.((((((...........)))))	chrX:154300482-154300748(+)$1	1	44	67	20.2633
((((((............)))))	chr4:71824649-71824972(+)$1	1	94	117	23.0489
((((((.............)).)	chr11:244030-244358(+)$1	1	252	275	21.3586
)(((((............)))))	chr9:131029692-131029980(-)$1	1	16	39	23.1413
..((((...............))	chr11:66611283-66611528(+)$1	1	142	165	18.3477
(((((((...........)))))	chr12:112845990-112846296(-)$1	1	241	264	21.1196
.(((((.............))))	chr17:74732094-74732346(-)$1	1	9	32	22.9642
((((((..............)))	chr12:53345358-53345638(+)$1	1	5	28	20.5402
((((((.............))))	chr7:128633727-128633989(-)$1	1	178	201	22.5611
(.(((................))	chr7:6513656-6513936(-)$1	1	227	250	21.4038
.(((((............)))))	chrX:153587639-153587902(-)$1	1	184	207	22.4770
(.((((.............))))	chr6:31727002-31727338(+)$1	1	152	175	22.6487
((.(((............))).)	chr11:43421489-43421811(+)$1	1	213	236	22.8420
))((((.............))))	chr1:43305596-43305848(+)$1	1	169	192	22.4314
((((((............)))))	chr2:201681856-201682150(+)$1	1	47	70	23.3230
.(((((...........))))).	chr12:124092040-124092359(+)$1	1	86	109	19.8899
((((((..............)))	chr4:79766002-79766338(+)$1	1	289	312	22.0321
)(((((............)))))	chr10:1046764-1047066(+)$1	1	278	301	22.9258
...(((............)))))	chr19:13051445-13051695(+)$1	1	211	234	22.7565
((((..............)))))	chr21:40720111-40720358(-)$1	1	208	231	19.2222
(.(((..............))).	chr11:27405757-27406023(-)$1	1	210	233	21.8952
((((((..............)))	chr17:62499335-62499607(-)$1	1	119	142	22.0409
.(((((............)))))	chr1:47758938-47759251(-)$1	1	199	222	22.8448
...(((...........))))))	chr1:196642127-196642429(+)$1	1	59	82	20.8936
.(((((...........))))).	chr17:38572516-38572789(-)$1	1	248	271	19.8899
(.((((...........)))).)	chr2:113410329-113410600(+)$1	1	117	140	21.4731
((((((............)))))	chr22:29668057-29668409(+)$1	1	53	76	21.1187
(((.((............))...	chr16:70582214-70582524(+)$1	1	32	55	22.2190
))((((............)))).	chrX:122778398-122778681(-)$1	1	219	242	19.1989
.(((((............)))))	chr1:44423741-44424071(+)$1	1	202	225	23.4528
((((((.............))))	chr6:33248195-33248528(-)$1	1	15	38	22.5768
(.((((...........)))).)	chr6:30675216-30675523(-)$1	1	57	80	21.7898
((.(((............)))))	chr3:184556395-184556728(+)$1	1	34	57	23.3816
((((((............)))))	chr20:13767785-13768098(+)$1	1	220	243	21.1187
((((..............)))).	chr16:88871977-88872235(+)$1	1	135	158	19.7685
(((((...............)))	chr1:113642992-113643295(+)$1	1	265	288	18.2286
..(((((...........)))))	chr2:111425258-111425529(-)$1	1	152	175	20.3789
(((.((................)	chr14:21461223-21461558(+)$1	1	68	91	20.3023
((.(((............))).)	chr5:179044509-179044746(-)$1	1	27	50	23.2492
(.((((................)	chr3:140681931-140682245(+)$1	1	263	286	21.2662
)(((((.............))).	chr11:118963483-118963772(+)$1	1	193	216	21.8467
((((((...........))))))	chr6:30557353-30557607(+)$1	1	100	123	20.0850
((((((.............))))	chr18:47812286-47812553(-)$1	1	182	205	22.5611
.(((...............))))	chr4:727651-727937(+)$1	1	66	89	17.5150

#PSSM
g : 0.14	e : 0.12	f : 0.09	h : 0.09	! : 0.07	d : 0.07	c : 0.06	[ : 0.06	: : 0.04	# : 0.03	= : 0.03	& : 0.03	i : 0.01	b : 0.01	a : 0.01	G : 0.01	$ : 0.01	J : 0.01	" : 0.01	
e : 0.26	[ : 0.12	g : 0.12	f : 0.09	d : 0.06	h : 0.06	c : 0.04	! : 0.04	b : 0.03	# : 0.03	= : 0.03	i : 0.01	$ : 0.01	J : 0.01	& : 0.01	
d : 0.26	e : 0.25	g : 0.11	f : 0.09	c : 0.06	h : 0.04	[ : 0.04	b : 0.03	= : 0.03	i : 0.01	# : 0.01	$ : 0.01	
d : 0.26	e : 0.23	c : 0.14	g : 0.11	f : 0.07	[ : 0.04	h : 0.04	= : 0.03	! : 0.01	i : 0.01	
e : 0.23	d : 0.22	c : 0.12	g : 0.11	b : 0.07	f : 0.06	h : 0.04	= : 0.03	w : 0.03	! : 0.01	i : 0.01	x : 0.01	
d : 0.22	e : 0.19	g : 0.11	b : 0.09	c : 0.09	f : 0.06	h : 0.04	w : 0.04	y : 0.03	= : 0.03	x : 0.03	v : 0.01	i : 0.01	
u : 0.33	v : 0.19	w : 0.12	y : 0.11	t : 0.11	x : 0.04	b : 0.01	d : 0.01	f : 0.01	g : 0.01	e : 0.01	
u : 0.33	v : 0.19	t : 0.19	w : 0.12	y : 0.11	x : 0.04	
u : 0.33	v : 0.19	t : 0.19	w : 0.12	y : 0.11	x : 0.04	
u : 0.33	v : 0.19	t : 0.19	w : 0.12	y : 0.11	x : 0.04	
u : 0.33	v : 0.19	t : 0.19	w : 0.12	y : 0.11	x : 0.04	
u : 0.33	v : 0.19	t : 0.19	w : 0.12	y : 0.11	x : 0.04	
u : 0.33	v : 0.19	t : 0.19	w : 0.12	y : 0.11	x : 0.04	
u : 0.33	v : 0.19	t : 0.19	w : 0.12	y : 0.11	x : 0.04	
u : 0.33	v : 0.19	t : 0.19	w : 0.12	y : 0.11	x : 0.04	
u : 0.33	v : 0.19	t : 0.19	w : 0.12	y : 0.11	x : 0.04	
u : 0.33	v : 0.19	t : 0.19	w : 0.12	y : 0.11	x : 0.04	
u : 0.33	v : 0.19	w : 0.12	y : 0.11	t : 0.07	d : 0.04	x : 0.04	e : 0.03	c : 0.01	f : 0.01	
v : 0.17	d : 0.15	e : 0.15	y : 0.11	w : 0.09	c : 0.07	b : 0.04	f : 0.04	g : 0.04	x : 0.04	h : 0.03	
d : 0.22	e : 0.17	c : 0.12	y : 0.11	w : 0.07	g : 0.07	f : 0.06	b : 0.06	x : 0.03	h : 0.03	= : 0.01	
d : 0.22	e : 0.20	c : 0.12	y : 0.11	g : 0.11	f : 0.06	h : 0.04	3 : 0.03	= : 0.03	2 : 0.01	b : 0.01	x : 0.01	
e : 0.22	d : 0.19	g : 0.12	] : 0.09	y : 0.07	c : 0.07	f : 0.06	h : 0.06	3 : 0.03	= : 0.03	2 : 0.01	
e : 0.23	g : 0.14	d : 0.12	f : 0.07	h : 0.07	3 : 0.06	: : 0.06	b : 0.04	2 : 0.03	] : 0.03	c : 0.03	= : 0.03	i : 0.01	J : 0.01	

#score	1360.8651515346403
#seq	63
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_transcript_m1_run1.txt

#BEAR
""===========bb[cccnnnnnccc333bb]======	chr7:158703432-158703766(+)$1	334	262	301	18.5528
========"""ccc[ddddmmmmdddd]ccc4444====	chr19:802209-802483(+)$1	274	201	240	13.4806
ffffccc!!ccc####cccmmmmccc333ccc]ccc22f	chr3:49050189-49050477(+)$1	288	107	146	13.9122
ccc"""bb[ggggggg!!aooooooa22ggggggg]bbc	chr16:89010951-89011194(-)$1	243	180	219	14.3316
============[eeeeellleeeee]============	chr4:140097463-140097780(-)$1	317	217	256	14.2830
ii[bb[ccc[cccbbbbbbnnnnnbb]bb]bb]cccccc	chr19:34882195-34882465(+)$1	270	31	70	13.3864
###iiiiiiiii####bb!!ammmma22bb22iiiiiii	chr16:21523530-21523779(-)$1	249	104	143	14.4160
"a[eeeee[bb!!ccc[bboooooobb]ccc22bb]eee	chr6:166755839-166756158(-)$1	319	81	120	11.7553
cccffffff####abb[bbnnnnnbb]bb]a4444ffff	chr22:49839966-49840218(-)$1	252	209	248	13.6976
=====================lll===============	chr1:987809-988086(+)$1	277	228	267	17.6764
ccc!!ffffff[bb!!cccmmmmccc22bb22ffffff]	chrX:39956097-39956365(-)$1	268	51	90	12.5418
]bb:bb============oooooo============]bb	chr14:19686476-19686827(+)$1	351	171	210	14.8170
ggg####bb[a[ccc[bboooooobb]ccc]a]bb4444	chr9:126691836-126692113(-)$1	277	121	160	13.9608
CC==========[ccc[annnnna]ccc==========J	chr12:132386367-132386666(+)$1	299	4	43	14.0296
gggg[bbbb[ccc####bbnnnnnbb22ccc]bb]bb]g	chr17:41107957-41108281(-)$1	324	48	87	14.6352
ggggggg"""bb!!eeeeemmmmeeeeebb]ggggggg]	chr2:236455157-236455447(+)$1	290	233	272	11.8206
ddd[ccc[ccc"""bb[cccmmmmccc]bb22cccccc]	chr1:2199816-2200086(+)$1	270	215	254	12.1633
ccc[ffffff"""bb[ccclllccc333bb]ffffff]c	chr8:142432765-142433069(+)$1	304	30	69	13.3461
#a[iiiiiiiii!!a[bboooooobba]iiiiiiiii22	chr16:85682958-85683215(+)$1	257	157	196	16.8842
:bb[bb[============nnnnn============22b	chr14:105914064-105914331(+)$1	267	56	95	16.2550
[iiiiiiiii[bb[ddddnnnnndddd]bb]iiiiiiii	chr7:2239627-2239933(-)$1	306	176	215	14.8321
============[bb!!bbnnnnnbb22bb]========	chr5:34192102-34192335(-)$1	233	44	83	19.2295
iiiiiiiiggggggg"""annnnna333ggggggg22ii	chr4:903881-904250(-)$1	369	2	41	17.3100
:==========!!eeeeeooooooeeeee]=========	chr19:59057494-59057732(+)$1	238	117	156	14.8869
ee:iiiiiiiii####bboooooobb4444iiiiiiiii	chr19:46699609-46699918(-)$1	309	70	109	16.4632
oooeeeeebb[bb"""cccnnnnnccc4444bb]bbggg	chr7:143082009-143082283(+)$1	274	103	142	13.2117
eeee####ccca[ccc[annnnna]ccc]a]ccceeeee	chr3:9876764-9877116(+)$1	352	151	190	13.0079
eeee[aggggggg!!a[bbnnnnnbb]a22ggggggg]a	chr9:136137551-136137898(-)$1	347	275	314	15.8067
cca[===========ddddammmma]dddd]========	chr16:88850477-88850780(-)$1	303	166	205	14.6293
cc!!bb!!ccc[bb!!cccnnnnnccc]bb]ccc22bb2	chr7:150798743-150799030(+)$1	287	70	109	14.4878
fff$$$$$===========nnnnn===========4444	chr22:20095413-20095699(+)$1	286	30	69	16.6090
hhhhggggggg[cccddddnnnnndddd]ccc]gggggg	chr7:5635220-5635600(+)$1	380	146	185	13.6825
eeee:ggggggg[bb[cccmmmmccc22bb]gggggggc	chr13:114252112-114252397(+)$1	285	170	209	12.9887
dd[bb[ggggggg[eeeeennnnneeeee333ggggggg	chr9:139997865-139998145(+)$1	280	210	249	14.1004
iiiiiiiii[ccc"""bboooooobb]ccciiiiiiiii	chr7:2145772-2146158(-)$1	386	271	310	16.9998
ccciiiiiiiii"""a[bbmmmmbb]a333iiiiiiiii	chr16:88844134-88844423(-)$1	289	140	179	16.1391
:::iiiiiiiii####cccmmmmccc4444iiiiiiiii	chr11:63913966-63914236(-)$1	270	109	148	13.6710
cc[eeeee####gggggggnnnnngggggggeeeee]cc	chr11:126146108-126146382(+)$1	274	145	184	13.3305
e$$$$$ggggggg####bbnnnnnbb22gggggggeeee	chr6:158986243-158986512(+)$1	269	63	102	15.2824
eee[ccc!!cccbb[cccooooooccc]bb333ccc22c	chr1:1282778-1283037(-)$1	259	74	113	14.1690
ffffff[a[ggggggg[ccclllccc22ggggggg]a]f	chr7:148580485-148580787(-)$1	302	189	228	13.7611
dd####gggggggbb[a!!ammmma22a]bb]ggggggg	chr2:132039986-132040227(+)$1	241	44	83	13.0234
ffff!!eeeee[bb"""bbnnnnnbb333bb]eeeee]f	chr5:138629678-138629996(+)$1	318	92	131	14.5476
[ffffff!!==========nnnnn==========22fff	chr19:10406705-10406966(+)$1	261	202	241	16.4214
""ccc[ccc[eeeee[cccooooooccc]eeeee]ccc]	chr9:136137357-136137602(-)$1	245	64	103	12.3222
===========fffffflllffffff22===========	chr19:1416029-1416288(+)$1	259	137	176	12.4510
hhhhhh[ccc[ccc!!cccnnnnnccc22ccc]ccc]hh	chr19:54678410-54678704(-)$1	294	151	190	14.3963
==========!!cccrrrrrrrrrccc333=========	chr17:80877299-80877590(+)$1	291	95	134	15.3957
b[ggggggg!!bb[a[cccnnnnnccc]a]bb22ggggg	chr7:157033625-157033952(+)$1	327	276	315	15.2465
$$ccc[ffffff"""ddddnnnnndddd333ffffffcc	chr17:54975127-54975450(-)$1	323	12	51	12.9583
ffffff============oooooo============]ff	chr19:3457392-3457650(+)$1	258	134	173	16.7496
gg[ccc[a####ccc[cccmmmmccc]ccc22a]ccc]g	chr22:49921847-49922099(-)$1	252	117	156	13.4397
ccc!!ccc!!ffffff[bbnnnnnbb]ffffff]ccc33	chr19:34874338-34874547(+)$1	209	32	71	14.0233
fffff!!bb[iiiiiiiiinnnnniiiiiiiii]bbfff	chr16:1413478-1413809(-)$1	331	51	90	14.6810

#otherMatches

#Seq PSSM
AGGCCCGUGGGCCGAGGGCGAUUGGCUGUGUCAGGCCUG	chr7:158703432-158703766(+)$1	334	262	301	18.5528
CAGCUCCUUGACCAGGCAUGGGGGUGUGUGGAGCUGGGG	chr19:802209-802483(+)$1	274	201	240	13.4806
GCCCUGCGUGGUUAUGAGGAGCUCCUGUUGCUGGCAUCG	chr3:49050189-49050477(+)$1	288	107	146	13.9122
GGCCAGAAGUGCAGUUGGCAGGACAGAAGGCUGCAGUUG	chr16:89010951-89011194(-)$1	243	180	219	14.3316
GGCGGGGGGGGGCGCUGGACACCAGUUUCCUUCCCUGUC	chr4:140097463-140097780(-)$1	317	217	256	14.2830
GGACUGUCCAUGUCUGAGGAGUUACCAUCUGGUACAGGA	chr19:34882195-34882465(+)$1	270	31	70	13.3864
UUGUCUUCAGGCAUAGGGGAGCACACAGCCACGCCUGGG	chr16:21523530-21523779(-)$1	249	104	143	14.4160
GCGGGACCGGACUUCCGGCUGGUCUGUGGGGUUUCGGGU	chr6:166755839-166756158(-)$1	319	81	120	11.7553
CAGAGGCCCGAGAGCCAGCCACUAGCCGGACGGAAGGGC	chr22:49839966-49840218(-)$1	252	209	248	13.6976
ugcauggguccauguguguauaguguguacacauggguc	chr1:987809-988086(+)$1	277	228	267	17.6764
GCUUUCGUUUUUAUUUCAUAGCUAUGUUAUUUAAAAUGC	chrX:39956097-39956365(-)$1	268	51	90	12.5418
GUCGGCCCGGCGGGGGUGACCCCGCGCCCUCGCCGGUGC	chr14:19686476-19686827(+)$1	351	171	210	14.8170
gcggggugcgcgcgggguggcagggcgccgggggUCAGG	chr9:126691836-126692113(-)$1	277	121	160	13.9608
GUCUCGGGGGGAAUGUGAGGAGUUGGCGUCUUCCUGAGG	chr12:132386367-132386666(+)$1	299	4	43	14.0296
CAGUGACCUUCAGGUAAGUGAGGAACGGCUGUGGAGUGG	chr17:41107957-41108281(-)$1	324	48	87	14.6352
AAGGAGCUGUCAGUCUGAGACCUCUCAGUGUGCUCUUUC	chr2:236455157-236455447(+)$1	290	233	272	11.8206
UUCUUGGCUGGCUUGACAGGUCCCCCUUUCCCUCACCAU	chr1:2199816-2200086(+)$1	270	215	254	12.1633
UCCCGAGCCCUUUGCUGUCCCAGAUGUUGCUGGGCUCUG	chr8:142432765-142433069(+)$1	304	30	69	13.3461
UCUGUGGGCCCCUCGCUCUGCACUGACUGGGGCCUGCCU	chr16:85682958-85683215(+)$1	257	157	196	16.8842
UGGCGGCUGGGCCUUGCGGUGAUUCUGCAGGGCCCACAC	chr14:105914064-105914331(+)$1	267	56	95	16.2550
CCCUCCACCUGUCGUGGGUGCGCCCCGGGAGGGGUGGAG	chr7:2239627-2239933(-)$1	306	176	215	14.8321
CUUUAGUUCCUGGAGGCCUUCCGUAGAGCUGUGGGAGCU	chr5:34192102-34192335(-)$1	233	44	83	19.2295
ACUGAGCAGGGCCCUGAGCGUCGUGGAAGGGGCCCUGUG	chr4:903881-904250(-)$1	369	2	41	17.3100
GUUCCCUGGCACACAUCUGGUAUAAGAUGCUGCUAGGGA	chr19:59057494-59057732(+)$1	238	117	156	14.8869
GGAGGCUCAGCUGGGGUCGGGCAGGGAAGGGGCUGAGCC	chr19:46699609-46699918(-)$1	309	70	109	16.4632
GGAGCUUCCCAGGGAGUGCAGACAGCGGGGACCAGGAGG	chr7:143082009-143082283(+)$1	274	103	142	13.2117
AGGGCUGAGGCCUGCCCCAUGAAGAGGCUGAGCCCCCUG	chr3:9876764-9877116(+)$1	352	151	190	13.0079
CAGGUGAGAGAAGGAGGGUGAGUGAUGUGAUUUUUCUAC	chr9:136137551-136137898(-)$1	347	275	314	15.8067
GCCUGGUGUCAGGGCGGGGCAGGGGUCCCCAGUCCUGGC	chr16:88850477-88850780(-)$1	303	166	205	14.6293
AGGAGGGGCCCAGGAUAGGCCGAACCUCCCAGGGAGCCA	chr7:150798743-150799030(+)$1	287	70	109	14.4878
GAGGUGAGUGUAAUCAUUUUCCUCAAAUGAUUACAGAAA	chr22:20095413-20095699(+)$1	286	30	69	16.6090
CCUUGGGUGAGAGCUUAGUGCAGGGCUAUGGUCCUUGCC	chr7:5635220-5635600(+)$1	380	146	185	13.6825
CCUCCCCUGCAGGCUGCUGCUUCCAGGAGGGCUGCAGGC	chr13:114252112-114252397(+)$1	285	170	209	12.9887
CAGGCGUGCAGGUCGGUGUUACACACAUUCACACUUGCA	chr9:139997865-139998145(+)$1	280	210	249	14.1004
GCACCUUUCACGCAAGGCACCGACGCAGUGGAGGGGUGC	chr7:2145772-2146158(-)$1	386	271	310	16.9998
AGGAGCCUCGAAGGAAGGCACAGGCGUGGGUUUGGGGCU	chr16:88844134-88844423(-)$1	289	140	179	16.1391
GGAGGUUGGGCAGAAGCAUAGAAGUGGGGAUGCCUGGCU	chr11:63913966-63914236(-)$1	270	109	148	13.6710
GUUUCUGCAGUUCGUAACCGCACUGGUUGUGGCAGGUAU	chr11:126146108-126146382(+)$1	274	145	184	13.3305
UUCUGAACCCCUCGUGAGCCCUAUGUGGGAGGGGUAGGC	chr6:158986243-158986512(+)$1	269	63	102	15.2824
CUAAUGCUGUUUGUUGCAAAUGUGUGCCACCAGGAAAUG	chr1:1282778-1283037(-)$1	259	74	113	14.1690
GACGUUCGCGGCGGGGAACUCGGAGUAGCUUCGCCUCUG	chr7:148580485-148580787(-)$1	302	189	228	13.7611
UUGGGGGUGAGGGGUGAAAAGUGAUGGUGGCUCCUUCAC	chr2:132039986-132040227(+)$1	241	44	83	13.0234
GGAGAUUUUGGGUGAAGAGGUGCGCUGACCGGCCGAGCU	chr5:138629678-138629996(+)$1	318	92	131	14.5476
AGCUCCCCGGGGCAUGAGGACUGACUUCGUGCCUGUGGG	chr19:10406705-10406966(+)$1	261	202	241	16.4214
UCCUUUUCCUAAUAAUGCUUGUCUUGGUCUUGUUUGGGU	chr9:136137357-136137602(-)$1	245	64	103	12.3222
AGCACGUUGCUCCUGCUGCUGGUGGGGCAGUAACGUGUU	chr19:1416029-1416288(+)$1	259	137	176	12.4510
GCUGCGAGCUCCUGGAUCCCUGAAGGAGACAGAGGCCUG	chr19:54678410-54678704(-)$1	294	151	190	14.3963
GUAUGAAAUGGGGCAGAGCAGACGUGUGGGCAUUUCAUG	chr17:80877299-80877590(+)$1	291	95	134	15.3957
UGUCGCAGCAUAGUCAGGAAAAAAUCCCGucuuagcugu	chr7:157033625-157033952(+)$1	327	276	315	15.2465
AAAGUUGGUGUGAACCCAGGAGGGCUGGCUGCACACUGC	chr17:54975127-54975450(-)$1	323	12	51	12.9583
CCUCUGCUCUCUCCCCGGUUUGUGUUGGGGAGAGGGUUG	chr19:3457392-3457650(+)$1	258	134	173	16.7496
CUGCUGUGUUCUGGGGAGGGUGGCCUGCCCCUCUCAGAG	chr22:49921847-49922099(-)$1	252	117	156	13.4397
GAAAAGUGAGGAUCAGGUAGUGGGUGGCUGAUUGCACAA	chr19:34874338-34874547(+)$1	209	32	71	14.0233
GGGGGCAAGAUCCUGGGGCUGUGUGCCCUGGGGCCUCCC	chr16:1413478-1413809(-)$1	331	51	90	14.6810

#DB
..(((((((((((((.(((.....)))...)).))))))	chr7:158703432-158703766(+)$1	1	262	301	18.5528
((((((((...(((.((((....)))).)))....))))	chr19:802209-802483(+)$1	1	201	240	13.4806
(((((((..(((....(((....)))...))).)))..)	chr3:49050189-49050477(+)$1	1	107	146	13.9122
(((...((.(((((((..(......)..))))))).)))	chr16:89010951-89011194(-)$1	1	180	219	14.3316
((((((((((((.(((((...))))).))))))))))))	chr4:140097463-140097780(-)$1	1	217	256	14.2830
((.((.(((.(((((((((.....)).)).)).))))))	chr19:34882195-34882465(+)$1	1	31	70	13.3864
...(((((((((....((..(....)..))..)))))))	chr16:21523530-21523779(-)$1	1	104	143	14.4160
.(.(((((.((..(((.((......)).)))..)).)))	chr6:166755839-166756158(-)$1	1	81	120	11.7553
)))((((((....(((.((.....)).)).)....))))	chr22:49839966-49840218(-)$1	1	209	248	13.6976
(((((((((((((((((((((...)))))))))))))))	chr1:987809-988086(+)$1	1	228	267	17.6764
(((..((((((.((..(((....)))..))..)))))).	chrX:39956097-39956365(-)$1	1	51	90	12.5418
.)).((((((((((((((......)))))))))))).))	chr14:19686476-19686827(+)$1	1	171	210	14.8170
(((....((.(.(((.((......)).))).).))....	chr9:126691836-126692113(-)$1	1	121	160	13.9608
((((((((((((.(((.(.....).)))))))))))))(	chr12:132386367-132386666(+)$1	1	4	43	14.0296
((((.((((.(((....((.....))..))).)).)).)	chr17:41107957-41108281(-)$1	1	48	87	14.6352
(((((((...((..(((((....))))))).))))))).	chr2:236455157-236455447(+)$1	1	233	272	11.8206
(((.(((.(((...((.(((....))).))..)))))).	chr1:2199816-2200086(+)$1	1	215	254	12.1633
(((.((((((...((.(((...)))...)).)))))).)	chr8:142432765-142433069(+)$1	1	30	69	13.3461
.(.(((((((((..(.((......))).)))))))))..	chr16:85682958-85683215(+)$1	1	157	196	16.8842
.((.((.((((((((((((.....))))))))))))..)	chr14:105914064-105914331(+)$1	1	56	95	16.2550
.(((((((((.((.((((.....)))).)).))))))))	chr7:2239627-2239933(-)$1	1	176	215	14.8321
((((((((((((.((..((.....))..)).))))))))	chr5:34192102-34192335(-)$1	1	44	83	19.2295
(((((((((((((((...(.....)...)))))))..))	chr4:903881-904250(-)$1	1	2	41	17.3100
.((((((((((..(((((......))))).)))))))))	chr19:59057494-59057732(+)$1	1	117	156	14.8869
)).(((((((((....((......))....)))))))))	chr19:46699609-46699918(-)$1	1	70	109	16.4632
...)))))((.((...(((.....)))....)).))(((	chr7:143082009-143082283(+)$1	1	103	142	13.2117
((((....((((.(((.(.....).))).).))))))))	chr3:9876764-9877116(+)$1	1	151	190	13.0079
((((.((((((((..(.((.....)).)..))))))).)	chr9:136137551-136137898(-)$1	1	275	314	15.8067
(((.((((((((((((((((....).)))).))))))))	chr16:88850477-88850780(-)$1	1	166	205	14.6293
((..((..(((.((..(((.....))).)).)))..)).	chr7:150798743-150799030(+)$1	1	70	109	14.4878
(((.....(((((((((((.....)))))))))))....	chr22:20095413-20095699(+)$1	1	30	69	16.6090
))))(((((((.(((((((.....)))).))).))))))	chr7:5635220-5635600(+)$1	1	146	185	13.6825
)))).(((((((.((.(((....)))..)).)))))))(	chr13:114252112-114252397(+)$1	1	170	209	12.9887
((.((.(((((((.(((((.....)))))...)))))))	chr9:139997865-139998145(+)$1	1	210	249	14.1004
(((((((((.(((...((......)).))))))))))))	chr7:2145772-2146158(-)$1	1	271	310	16.9998
((((((((((((...(.((....)).)...)))))))))	chr16:88844134-88844423(-)$1	1	140	179	16.1391
...(((((((((....(((....)))....)))))))))	chr11:63913966-63914236(-)$1	1	109	148	13.6710
((.(((((....(((((((.....)))))))))))).))	chr11:126146108-126146382(+)$1	1	145	184	13.3305
(.....(((((((....((.....))..)))))))))))	chr6:158986243-158986512(+)$1	1	63	102	15.2824
(((.(((..(((((.(((......))).))...)))..)	chr1:1282778-1283037(-)$1	1	74	113	14.1690
((((((.(.(((((((.(((...)))..))))))).).)	chr7:148580485-148580787(-)$1	1	189	228	13.7611
((....(((((((((.(..(....)..).)).)))))))	chr2:132039986-132040227(+)$1	1	44	83	13.0234
((((..(((((.((...((.....))...)).))))).)	chr5:138629678-138629996(+)$1	1	92	131	14.5476
.((((((..((((((((((.....))))))))))..)))	chr19:10406705-10406966(+)$1	1	202	241	16.4214
..(((.(((.(((((.(((......))).))))).))).	chr9:136137357-136137602(-)$1	1	64	103	12.3222
(((((((((((((((((...))))))..)))))))))))	chr19:1416029-1416288(+)$1	1	137	176	12.4510
((((((.(((.(((..(((.....)))..))).))).))	chr19:54678410-54678704(-)$1	1	151	190	14.3963
((((((((((..(((.........)))...)))))))))	chr17:80877299-80877590(+)$1	1	95	134	15.3957
(.(((((((..((.(.(((.....))).).))..)))))	chr7:157033625-157033952(+)$1	1	276	315	15.2465
..(((.((((((...((((.....))))...))))))))	chr17:54975127-54975450(-)$1	1	12	51	12.9583
((((((((((((((((((......)))))))))))).))	chr19:3457392-3457650(+)$1	1	134	173	16.7496
((.(((.(....(((.(((....))).)))..).))).)	chr22:49921847-49922099(-)$1	1	117	156	13.4397
(((..(((..((((((.((.....)).)))))).)))..	chr19:34874338-34874547(+)$1	1	32	71	14.0233
(((((..((.(((((((((.....))))))))).)))))	chr16:1413478-1413809(-)$1	1	51	90	14.6810

#PSSM
c : 0.16	= : 0.11	f : 0.11	e : 0.11	g : 0.07	" : 0.05	i : 0.05	d : 0.05	: : 0.05	# : 0.03	[ : 0.03	h : 0.03	] : 0.01	C : 0.01	o : 0.01	b : 0.01	$ : 0.01	
c : 0.16	= : 0.12	f : 0.12	e : 0.09	i : 0.07	g : 0.07	d : 0.05	" : 0.03	a : 0.03	b : 0.03	h : 0.03	$ : 0.03	# : 0.01	C : 0.01	o : 0.01	: : 0.01	[ : 0.01	
= : 0.16	c : 0.14	f : 0.12	[ : 0.11	g : 0.07	e : 0.07	i : 0.05	# : 0.03	b : 0.03	: : 0.03	h : 0.03	d : 0.01	o : 0.01	a : 0.01	! : 0.01	$ : 0.01	
= : 0.16	i : 0.14	f : 0.12	e : 0.11	[ : 0.09	! : 0.05	g : 0.05	c : 0.05	b : 0.03	# : 0.03	$ : 0.03	h : 0.03	" : 0.01	: : 0.01	
= : 0.18	i : 0.14	c : 0.11	f : 0.11	b : 0.09	e : 0.05	! : 0.05	# : 0.05	g : 0.05	[ : 0.03	$ : 0.03	" : 0.01	: : 0.01	h : 0.01	
= : 0.18	i : 0.14	f : 0.11	c : 0.09	[ : 0.07	b : 0.07	g : 0.07	e : 0.05	# : 0.05	$ : 0.03	! : 0.03	" : 0.01	a : 0.01	h : 0.01	
= : 0.22	i : 0.14	g : 0.14	c : 0.11	f : 0.09	e : 0.07	[ : 0.07	b : 0.03	# : 0.03	! : 0.03	$ : 0.01	
= : 0.24	i : 0.14	g : 0.12	! : 0.07	b : 0.07	c : 0.07	e : 0.07	f : 0.07	a : 0.03	" : 0.01	[ : 0.01	# : 0.01	$ : 0.01	
= : 0.24	g : 0.14	i : 0.12	c : 0.11	! : 0.07	f : 0.07	b : 0.07	[ : 0.05	" : 0.03	# : 0.03	e : 0.01	
= : 0.25	g : 0.16	c : 0.11	[ : 0.11	i : 0.11	# : 0.05	f : 0.05	" : 0.03	b : 0.03	! : 0.03	e : 0.01	
= : 0.24	g : 0.16	c : 0.14	i : 0.11	# : 0.05	f : 0.05	[ : 0.05	" : 0.03	b : 0.03	e : 0.03	! : 0.03	a : 0.01	
= : 0.20	g : 0.14	c : 0.12	i : 0.11	[ : 0.09	b : 0.07	! : 0.05	# : 0.05	f : 0.05	" : 0.03	a : 0.01	e : 0.01	
c : 0.16	= : 0.14	g : 0.14	b : 0.12	# : 0.09	[ : 0.09	! : 0.07	" : 0.07	f : 0.03	e : 0.01	i : 0.01	
b : 0.18	c : 0.16	= : 0.12	# : 0.11	" : 0.09	g : 0.07	e : 0.05	! : 0.05	[ : 0.05	f : 0.03	a : 0.01	i : 0.01	
b : 0.14	c : 0.12	= : 0.12	# : 0.11	e : 0.09	" : 0.09	g : 0.07	! : 0.07	[ : 0.03	a : 0.03	f : 0.03	d : 0.01	i : 0.01	
[ : 0.16	# : 0.11	= : 0.11	d : 0.09	e : 0.07	c : 0.07	! : 0.07	" : 0.07	g : 0.05	b : 0.05	a : 0.03	f : 0.03	r : 0.01	i : 0.01	
c : 0.24	[ : 0.16	b : 0.11	= : 0.11	d : 0.09	e : 0.07	! : 0.03	# : 0.03	" : 0.03	g : 0.01	a : 0.01	f : 0.01	r : 0.01	i : 0.01	
c : 0.27	b : 0.27	= : 0.11	d : 0.09	e : 0.07	! : 0.03	a : 0.03	" : 0.01	g : 0.01	l : 0.01	r : 0.01	i : 0.01	
c : 0.25	b : 0.18	o : 0.14	d : 0.07	= : 0.07	n : 0.05	a : 0.03	l : 0.03	! : 0.03	e : 0.03	g : 0.01	r : 0.01	i : 0.01	
n : 0.46	o : 0.20	m : 0.14	l : 0.05	c : 0.03	a : 0.03	! : 0.01	= : 0.01	r : 0.01	
n : 0.46	m : 0.20	o : 0.20	l : 0.05	a : 0.01	= : 0.01	f : 0.01	r : 0.01	
n : 0.46	m : 0.22	o : 0.20	l : 0.05	e : 0.01	f : 0.01	r : 0.01	
n : 0.46	m : 0.22	o : 0.20	l : 0.03	e : 0.01	c : 0.01	f : 0.01	r : 0.01	
n : 0.40	o : 0.20	c : 0.12	m : 0.07	d : 0.03	e : 0.03	a : 0.03	l : 0.01	b : 0.01	f : 0.01	r : 0.01	
c : 0.27	b : 0.24	= : 0.11	d : 0.07	e : 0.07	o : 0.05	a : 0.05	] : 0.03	m : 0.01	g : 0.01	f : 0.01	i : 0.01	
c : 0.31	b : 0.24	= : 0.11	d : 0.07	e : 0.07	a : 0.03	3 : 0.03	] : 0.03	g : 0.01	2 : 0.01	f : 0.01	i : 0.01	
c : 0.20	2 : 0.18	] : 0.14	= : 0.11	d : 0.09	3 : 0.07	e : 0.05	a : 0.03	4 : 0.03	b : 0.01	g : 0.01	i : 0.01	
2 : 0.18	] : 0.14	3 : 0.12	= : 0.12	c : 0.11	e : 0.05	4 : 0.05	d : 0.05	b : 0.03	a : 0.03	g : 0.01	f : 0.01	i : 0.01	
b : 0.22	= : 0.16	3 : 0.11	c : 0.11	g : 0.09	] : 0.07	4 : 0.05	i : 0.03	e : 0.03	2 : 0.03	d : 0.01	a : 0.01	f : 0.01	
b : 0.22	c : 0.16	= : 0.16	3 : 0.09	g : 0.09	] : 0.07	4 : 0.05	i : 0.03	a : 0.01	2 : 0.01	d : 0.01	e : 0.01	f : 0.01	
= : 0.20	] : 0.16	c : 0.11	g : 0.11	i : 0.11	b : 0.09	2 : 0.07	3 : 0.05	a : 0.01	4 : 0.01	e : 0.01	f : 0.01	
= : 0.24	g : 0.12	i : 0.12	c : 0.09	2 : 0.09	b : 0.07	] : 0.05	f : 0.05	4 : 0.03	3 : 0.03	e : 0.03	a : 0.01	
= : 0.24	g : 0.16	i : 0.14	] : 0.11	f : 0.07	c : 0.05	e : 0.05	4 : 0.03	2 : 0.03	b : 0.03	3 : 0.01	a : 0.01	
= : 0.25	g : 0.18	c : 0.12	i : 0.12	] : 0.07	b : 0.05	f : 0.05	e : 0.05	4 : 0.03	2 : 0.01	
= : 0.24	g : 0.20	c : 0.12	i : 0.12	b : 0.07	f : 0.05	e : 0.05	4 : 0.03	] : 0.03	2 : 0.03	
= : 0.24	c : 0.14	i : 0.12	g : 0.12	f : 0.07	e : 0.07	] : 0.05	b : 0.05	2 : 0.05	4 : 0.03	
= : 0.18	g : 0.14	i : 0.12	f : 0.11	c : 0.09	2 : 0.07	e : 0.07	] : 0.07	b : 0.05	4 : 0.03	a : 0.01	
= : 0.18	i : 0.12	g : 0.12	] : 0.11	c : 0.09	f : 0.09	2 : 0.07	b : 0.05	e : 0.05	4 : 0.03	h : 0.01	3 : 0.01	
= : 0.16	f : 0.12	c : 0.12	i : 0.12	g : 0.12	] : 0.07	e : 0.05	b : 0.03	4 : 0.03	2 : 0.03	J : 0.01	a : 0.01	h : 0.01	3 : 0.01	

#score	786.202777320185
#seq	54
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_transcript_m3_run2.txt

#BEAR
dddd!!ddddddddmmmmdddd22dddd22	chr19:45406716-45406961(+)$1	245	29	59	9.3633
gggeeeeeffffffmmmmffffff22eeee	chr10:97365828-97366081(-)$1	253	135	165	9.7688
gggggga[eeeeemmmmeeeee22a22ggg	chr22:36863152-36863467(-)$1	315	188	218	8.3586
[dddd[ccc!!cccmmmmcccccc]dddd]	chr19:1244216-1244425(+)$1	209	40	70	11.5283
gggg[bb!!eeeeemmmmeeeee4444bb]	chr16:89627268-89627497(+)$1	229	18	48	9.9730
cc[ccc[ccc!!bbmmmmbb22cccccc]c	chr8:74205733-74205964(-)$1	231	70	100	11.0140
ggggg[a!!bb[bbmmmmbb]bbagggggg	chr19:39876082-39876338(+)$1	256	4	34	10.4665
###ccc[ccc[cccmmmmccc]cccccc88	chr1:6694247-6694515(-)$1	268	13	43	10.7246
dddd!!bb"""cccmmmmcccbb]dddd22	chr12:24967584-24967847(-)$1	263	154	184	10.4590
eeeee[a!!eeeeemmmmeeeeeaeeeee2	chr12:120637176-120637383(-)$1	207	169	199	10.1705
hhhh[affffff[ammmma]ffffff4444	chr11:67353484-67353713(+)$1	229	74	104	10.1641
ddd####ffffffooooooffffff333dd	chr22:43562674-43562909(-)$1	235	41	71	9.7723
[ccc[eeeee!!cccmmmmccc4444eeee	chr19:39305980-39306272(-)$1	292	84	114	10.1737
ff"""a!!ggggggglllggggggg22a]f	chr1:38175160-38175460(+)$1	300	157	187	9.9199
[dddd####ccc[ammmma]ccc22ddddf	chr1:113246205-113246502(-)$1	297	164	194	11.0351
[ffffff[ccc[bbmmmmbbcccffffff]	chr11:5274331-5274557(-)$1	226	12	42	10.1363
"""dddd[a[ddddmmmmdddd]adddd44	chr20:23614214-23614487(-)$1	273	140	170	9.5103
dddd"""bb[cccooooooccc]bb]dddd	chr17:6917500-6917741(+)$1	241	104	134	9.1126
ffff!!ccc!!cccmmmmccc]ccc22fff	chr11:67379754-67379980(+)$1	226	96	126	11.4483
hhh####a[eeeeemmmmeeeee]ahhhhh	chr12:118582807-118583039(+)$1	232	16	46	9.8756
[ccc"""gggggggmmmmggggggg]ccc]	chr16:31202703-31202921(+)$1	218	51	81	13.0587
===!!eeeeea[bbmmmmbb]a]eeeee33	chr1:54497616-54497904(-)$1	288	200	230	11.4590
dddd"""eeeee[cccmmmmccc4444eee	chr11:5290797-5291006(-)$1	209	167	197	8.5418
ggggggggggggggmmmmggggggg4444g	chr8:110355696-110355942(+)$1	246	34	64	11.6463
eee[a"""ffffffmmmmffffffaeeeee	chr19:45381926-45382210(+)$1	284	29	59	10.8984
[ffffff[ccc[bbmmmmbbcccffffff]	chr11:5274357-5274582(-)$1	225	37	67	10.1363
cc####eeeee[bboooooobb]eeeee44	chr16:85707003-85707248(+)$1	245	57	87	9.4063
hh[dddd!!a[cccmmmmccc]a22dddd]	chr8:109215109-109215376(-)$1	267	153	183	10.5633
ddd"""dddd!!bbmmmmbb22dddddddd	chr9:130925813-130926076(+)$1	263	94	124	10.3384
hccc[dddd[ddddmmmmdddd]dddd22c	chrX:100650329-100650545(+)$1	216	160	190	9.0753
!ffffffccc[cccmmmmccc]ccc]ffff	chr1:32669743-32670049(+)$1	306	26	56	10.4890
ff:eeeee"""cccmmmmccc]eeeeeggg	chr6:41756891-41757128(+)$1	237	71	101	9.2731
####==========mmmm==========44	chr12:24970777-24971029(-)$1	252	196	226	12.2424
!!eeeeeggggggglllggggggg4444ee	chr9:138824872-138825110(-)$1	238	52	82	9.1084
ff!!ccc[bb!!bbmmmmbb]bb]ccc]ff	chr1:67452365-67452604(+)$1	239	195	225	10.0650
:ccc"""iiiiiiiiillliiiiiiiii22	chr9:37357323-37357594(+)$1	271	223	253	8.5350
ggggg####eeeeemmmmeeeee22ggggg	chr7:123182018-123182264(-)$1	246	167	197	10.6629
d:ggggggg"""bbmmmmbb4444gggggg	chr20:43535090-43535332(+)$1	242	98	128	9.7315
eee[a!!gggggggmmmmggggggg]aeee	chr17:79801191-79801453(-)$1	262	51	81	11.9836
hhh####cccddddnnnnndddd]ccc444	chr12:100618038-100618252(+)$1	214	56	86	7.9893
"eeeee[eeeeebbmmmmbb]eeeee333e	chr15:34633964-34634207(-)$1	243	146	176	10.6180
==ccc[eeeee[bbmmmmbbeeeee]ccc:	chr18:9124812-9125050(+)$1	238	125	155	10.2564
beeeeedddd[abbmmmmbb]a]dddd]ee	chr19:17430721-17431003(+)$1	282	62	92	9.4131
ddd####ccc!!bbmmmmbb333ccc22dd	chr10:105148786-105149023(-)$1	237	145	175	11.8149
c:ccc!!ffffffooooooffffff]cccc	chr11:118888891-118889093(-)$1	202	99	129	8.4410
dddd!!dddd[cccmmmmcccdddd]dddd	chr6:74230624-74230853(-)$1	229	119	149	10.8040
eee####gggggggmmmmggggggg22eee	chr6:31606807-31607052(-)$1	245	211	241	12.0853
[dddd"""ffffffmmmmffffff22dddd	chr3:50643974-50644226(-)$1	252	108	138	10.7731
ca[bbiiiiiiiiimmmmiiiiiiiii]bb	chr1:1246889-1247135(+)$1	246	15	45	10.0448
ff[a"""gggggggooooooggggggg555	chr11:65622223-65622447(-)$1	224	15	45	8.3922
[ccc!!ggggggglllggggggg333ccc2	chr17:73262229-73262482(+)$1	253	186	216	9.3354
c:ccc!!ffffffooooooffffff]cccc	chr11:118888910-118889124(-)$1	214	130	160	8.4410
f[bb!!ccc[ddddmmmmddddccc]bb]f	chr8:125555347-125555614(+)$1	267	71	101	9.6354
ccc"""eeeee[ccclllccc]eeeeeccc	chr1:153963490-153963709(+)$1	219	9	39	9.9572

#otherMatches

#Seq PSSM
GGCGUCCCCAUCCUCCAAAGGGCCUGGGCC	chr19:45406716-45406961(+)$1	245	29	59	9.3633
CUUGCAGCUUCCUGCAUCCAGGAGAUGCUG	chr10:97365828-97366081(-)$1	253	135	165	9.7688
ACCCCCCAGGGAGCUGCCUCCCAGGCAGGG	chr22:36863152-36863467(-)$1	315	188	218	8.3586
ACCAGGAGCCGGGCUGGGGUCGCUGCUGGC	chr19:1244216-1244425(+)$1	209	40	70	11.5283
ggcccgggggggugcgcgcgcccggggUCC	chr16:89627268-89627497(+)$1	229	18	48	9.9730
AGUGGACAGUACGCAUGCGCCAACUUCCUC	chr8:74205733-74205964(-)$1	231	70	100	11.0140
GAGUGUGCAGGACGCAGGCGGCCCCACUCU	chr19:39876082-39876338(+)$1	256	4	34	10.4665
ACUGGUAUCUGAGUAACGGCUAAGAACCUC	chr1:6694247-6694515(-)$1	268	13	43	10.7246
ACAUCAGCUAGAUGGUAACAUGCAAUGUCA	chr12:24967584-24967847(-)$1	263	154	184	10.4590
CCGCAUGUCCCUUCGCGGGAAGGCUGUGGU	chr12:120637176-120637383(-)$1	207	169	199	10.1705
UGGUGGUGUCUGGCAGGAGGCGGGCAAGGA	chr11:67353484-67353713(+)$1	229	74	104	10.1641
UUGAAAUUAAGAACUAUCUUUCUUGUAGCA	chr22:43562674-43562909(-)$1	235	41	71	9.7723
AGGAUGGGCGAUGACAGUUGUUUCUAUGCC	chr19:39305980-39306272(-)$1	292	84	114	10.1737
UCUUUGAGCUGAUUGUUCUAAUCAGAGCUG	chr1:38175160-38175460(+)$1	300	157	187	9.9199
UCAGUUUCCGGAGGUCUACGUCCCUACUGU	chr1:113246205-113246502(-)$1	297	164	194	11.0351
ACUGGAGUGGCCAGUGCCCUGUCCUCCAGA	chr11:5274331-5274557(-)$1	226	12	42	10.1363
CCCGGUGUGCGGUGCAUACACCCCCACCUC	chr20:23614214-23614487(-)$1	273	140	170	9.5103
GGGCCCCGGCGCGUUUCCCCGCUCCAGCCC	chr17:6917500-6917741(+)$1	241	104	134	9.1126
CCGCCACUUUCGGCCGGAGCUCGAGGAGCG	chr11:67379754-67379980(+)$1	226	96	126	11.4483
AUUUUGGGGGGUAUUUUGGUACUGUGAUGG	chr12:118582807-118583039(+)$1	232	16	46	9.8756
AUUAAUUAGCCUGGCUCCCCAGGUUCUGGA	chr16:31202703-31202921(+)$1	218	51	81	13.0587
UUACUCAAAUCUGUGAAGACUGUAUUUGCU	chr1:54497616-54497904(-)$1	288	200	230	11.4590
GCCAUCCUGGGCAACCCCAAGGUCAAGGCC	chr11:5290797-5291006(-)$1	209	167	197	8.5418
UUGUGGUUUUAUUUCUGAAAGUAAAACUUG	chr8:110355696-110355942(+)$1	246	34	64	11.6463
GGUUGGACUUGUUCGUCUGGACGACACUGG	chr19:45381926-45382210(+)$1	284	29	59	10.8984
ACUGGAGUGGCCAGUGCCCUGUCCUCCAGA	chr11:5274357-5274582(-)$1	225	37	67	10.1363
UUGUUGUUUUGGUUUUUUUUGGGCAAAAAA	chr16:85707003-85707248(+)$1	245	57	87	9.4063
AGCAGGUCAGAGGUAAGAACCACACAUCUU	chr8:109215109-109215376(-)$1	267	153	183	10.5633
CCAACCGGGACCCAACCCUGCCUCCCUGGG	chr9:130925813-130926076(+)$1	263	94	124	10.3384
UUAUUUGAAAAGGUGAACAUCUAUUCAUUG	chrX:100650329-100650545(+)$1	216	160	190	9.0753
CAGGGGCUUCGUUCCAGGGAAGGAAUGCUC	chr1:32669743-32670049(+)$1	306	26	56	10.4890
UUUCCAGGAACUUGAUACUAAAUUUGGGAC	chr6:41756891-41757128(+)$1	237	71	101	9.2731
GUAGUUUGUAGUAUCAAUGUGUUACAAGAG	chr12:24970777-24971029(-)$1	252	196	226	12.2424
UAUUUUUAGCAUCUGACAGGUGUUUACAAA	chr9:138824872-138825110(-)$1	238	52	82	9.1084
UGUCAAAGAUGGUCUGUAGAAAUGUUUUUA	chr1:67452365-67452604(+)$1	239	195	225	10.0650
UUUCAAGAAAGUGUUUUAAAAAUACUUUGG	chr9:37357323-37357594(+)$1	271	223	253	8.5350
UUACUGACAUUUUGUAAUCAAGAAAAGUGA	chr7:123182018-123182264(-)$1	246	167	197	10.6629
CGAUUUUUCACAGCCUCAGCCUAGGAAAAA	chr20:43535090-43535332(+)$1	242	98	128	9.7315
CAGUGUCGCCAUGACUGAUCAUGGCUCUUG	chr17:79801191-79801453(-)$1	262	51	81	11.9836
CAUUCUAAAGUUGGAAAGACUGAUCUUAUA	chr12:100618038-100618252(+)$1	214	56	86	7.9893
UGGCAUCCAGUCUCUCGUGGCGAUUGAUUA	chr15:34633964-34634207(-)$1	243	146	176	10.6180
CCUGUGUGAACGCACCAAUGGUUCAAAUAA	chr18:9124812-9125050(+)$1	238	125	155	10.2564
GUUCUCCAGAGAACCAGAGUGUGUCUGUGA	chr19:17430721-17431003(+)$1	282	62	92	9.4131
AUGCCUGGAGAAGCUAAUGCCAACUCAUCA	chr10:105148786-105149023(-)$1	237	145	175	11.8149
AUGGUAAGCUUCAGGGGUGUGAAGUCGCCG	chr11:118888891-118889093(-)$1	202	99	129	8.4410
GCCAGAACACAGGUAAGUGCCGUGUGUGGU	chr6:74230624-74230853(-)$1	229	119	149	10.8040
AAAUAAAAGUCGGAUUUUUCUGGCUGCUUU	chr6:31606807-31607052(-)$1	245	211	241	12.0853
UAGGUCUGCUUCCUGCCCAGGAAGGUGCCU	chr3:50643974-50644226(-)$1	252	108	138	10.7731
CCCGUCUCUGUCCCAGGCGGGAUGGGGCAC	chr1:1246889-1247135(+)$1	246	15	45	10.0448
CUGUUUAGUUCUGUGUAUAAAUGGAAUGUU	chr11:65622223-65622447(-)$1	224	15	45	8.3922
UUGUCCUUAUACAAAAUGUAUAAAAAGCAG	chr17:73262229-73262482(+)$1	253	186	216	9.3354
AUGGUAAGCUUCAGGGGUGUGAAGUCGCCG	chr11:118888910-118889124(-)$1	214	130	160	8.4410
AAGGAGGCCGAGGAAGAAUUCUGGUACCGU	chr8:125555347-125555614(+)$1	267	71	101	9.6354
AGCUCUCCCCGGUGUGUGACAGUGGGGGCU	chr1:153963490-153963709(+)$1	219	9	39	9.9572

#DB
((((..((((((((....))))..))))..	chr19:45406716-45406961(+)$1	1	29	59	9.3633
)))(((((((((((....))))))..))))	chr10:97365828-97366081(-)$1	1	135	165	9.7688
(((((((.(((((....)))))..)..)))	chr22:36863152-36863467(-)$1	1	188	218	8.3586
.((((.(((..(((....)))))).)))).	chr19:1244216-1244425(+)$1	1	40	70	11.5283
((((.((..(((((....)))))....)).	chr16:89627268-89627497(+)$1	1	18	48	9.9730
((.(((.(((..((....))..)))))).)	chr8:74205733-74205964(-)$1	1	70	100	11.0140
(((((.(..((.((....)).)))))))))	chr19:39876082-39876338(+)$1	1	4	34	10.4665
...(((.(((.(((....))).))))))..	chr1:6694247-6694515(-)$1	1	13	43	10.7246
((((..((...(((....))))).))))..	chr12:24967584-24967847(-)$1	1	154	184	10.4590
(((((.(..(((((....))))))))))).	chr12:120637176-120637383(-)$1	1	169	199	10.1705
((((.(((((((.(....).))))))....	chr11:67353484-67353713(+)$1	1	74	104	10.1641
(((....((((((......))))))...))	chr22:43562674-43562909(-)$1	1	41	71	9.7723
.(((.(((((..(((....)))....))))	chr19:39305980-39306272(-)$1	1	84	114	10.1737
((...(..(((((((...)))))))..).)	chr1:38175160-38175460(+)$1	1	157	187	9.9199
.((((....(((.(....).)))..)))))	chr1:113246205-113246502(-)$1	1	164	194	11.0351
.((((((.(((.((....))))))))))).	chr11:5274331-5274557(-)$1	1	12	42	10.1363
...((((.(.((((....)))).)))))..	chr20:23614214-23614487(-)$1	1	140	170	9.5103
((((...((.(((......))).)).))))	chr17:6917500-6917741(+)$1	1	104	134	9.1126
((((..(((..(((....))).)))..)))	chr11:67379754-67379980(+)$1	1	96	126	11.4483
(((....(.(((((....))))).))))))	chr12:118582807-118583039(+)$1	1	16	46	9.8756
.(((...(((((((....))))))).))).	chr16:31202703-31202921(+)$1	1	51	81	13.0587
(((..((((((.((....)).).)))))..	chr1:54497616-54497904(-)$1	1	200	230	11.4590
((((...(((((.(((....)))....)))	chr11:5290797-5291006(-)$1	1	167	197	8.5418
((((((((((((((....)))))))....)	chr8:110355696-110355942(+)$1	1	34	64	11.6463
(((.(...((((((....))))))))))))	chr19:45381926-45382210(+)$1	1	29	59	10.8984
.((((((.(((.((....))))))))))).	chr11:5274357-5274582(-)$1	1	37	67	10.1363
((....(((((.((......)).)))))..	chr16:85707003-85707248(+)$1	1	57	87	9.4063
((.((((..(.(((....))).)..)))).	chr8:109215109-109215376(-)$1	1	153	183	10.5633
(((...((((..((....))..))))))))	chr9:130925813-130926076(+)$1	1	94	124	10.3384
((((.((((.((((....)))).))))..)	chrX:100650329-100650545(+)$1	1	160	190	9.0753
.(((((((((.(((....))).))).))))	chr1:32669743-32670049(+)$1	1	26	56	10.4890
)).(((((...(((....))).)))))(((	chr6:41756891-41757128(+)$1	1	71	101	9.2731
....((((((((((....))))))))))..	chr12:24970777-24971029(-)$1	1	196	226	12.2424
..((((((((((((...)))))))....))	chr9:138824872-138825110(-)$1	1	52	82	9.1084
((..(((.((..((....)).)).))).))	chr1:67452365-67452604(+)$1	1	195	225	10.0650
.(((...(((((((((...)))))))))..	chr9:37357323-37357594(+)$1	1	223	253	8.5350
(((((....(((((....)))))..)))))	chr7:123182018-123182264(-)$1	1	167	197	10.6629
).(((((((...((....))....))))))	chr20:43535090-43535332(+)$1	1	98	128	9.7315
(((.(..(((((((....))))))).))))	chr17:79801191-79801453(-)$1	1	51	81	11.9836
(((....(((((((.....)))).)))...	chr12:100618038-100618252(+)$1	1	56	86	7.9893
.(((((.(((((((....)).)))))...)	chr15:34633964-34634207(-)$1	1	146	176	10.6180
))(((.(((((.((....))))))).))).	chr18:9124812-9125050(+)$1	1	125	155	10.2564
((((((((((.(((....)).).)))).))	chr19:17430721-17431003(+)$1	1	62	92	9.4131
(((....(((..((....))...)))..))	chr10:105148786-105149023(-)$1	1	145	175	11.8149
).(((..((((((......)))))).)))(	chr11:118888891-118889093(-)$1	1	99	129	8.4410
((((..((((.(((....))))))).))))	chr6:74230624-74230853(-)$1	1	119	149	10.8040
(((....(((((((....)))))))..)))	chr6:31606807-31607052(-)$1	1	211	241	12.0853
.((((...((((((....))))))..))))	chr3:50643974-50644226(-)$1	1	108	138	10.7731
((.(((((((((((....))))))))).))	chr1:1246889-1247135(+)$1	1	15	45	10.0448
((.(...(((((((......)))))))...	chr11:65622223-65622447(-)$1	1	15	45	8.3922
.(((..(((((((...)))))))...))).	chr17:73262229-73262482(+)$1	1	186	216	9.3354
).(((..((((((......)))))).)))(	chr11:118888910-118889124(-)$1	1	130	160	8.4410
(.((..(((.((((....))))))).)).)	chr8:125555347-125555614(+)$1	1	71	101	9.6354
(((...(((((.(((...))).))))))))	chr1:153963490-153963709(+)$1	1	9	39	9.9572

#PSSM
d : 0.16	[ : 0.14	g : 0.11	c : 0.11	f : 0.11	h : 0.09	e : 0.07	# : 0.03	" : 0.03	= : 0.03	! : 0.03	: : 0.01	b : 0.01	
d : 0.20	c : 0.14	f : 0.14	g : 0.11	e : 0.11	h : 0.07	: : 0.05	# : 0.03	= : 0.03	" : 0.01	! : 0.01	a : 0.01	[ : 0.01	
d : 0.20	c : 0.16	g : 0.12	e : 0.12	[ : 0.07	f : 0.07	# : 0.05	h : 0.05	" : 0.03	= : 0.01	: : 0.01	! : 0.01	b : 0.01	
d : 0.18	c : 0.18	# : 0.12	e : 0.11	g : 0.11	f : 0.07	" : 0.05	! : 0.03	[ : 0.03	b : 0.03	h : 0.01	a : 0.01	
" : 0.14	! : 0.12	e : 0.11	c : 0.11	# : 0.11	g : 0.09	d : 0.09	[ : 0.07	f : 0.05	a : 0.03	= : 0.01	b : 0.01	
! : 0.16	" : 0.16	# : 0.14	e : 0.12	[ : 0.07	g : 0.05	c : 0.05	f : 0.05	d : 0.05	a : 0.03	b : 0.01	= : 0.01	i : 0.01	
e : 0.14	d : 0.12	# : 0.12	" : 0.12	c : 0.07	f : 0.07	! : 0.07	a : 0.05	[ : 0.05	g : 0.05	b : 0.03	= : 0.01	i : 0.01	
e : 0.16	c : 0.14	g : 0.14	d : 0.09	[ : 0.09	! : 0.09	f : 0.07	b : 0.03	# : 0.03	" : 0.03	i : 0.03	a : 0.01	= : 0.01	
c : 0.18	g : 0.16	e : 0.14	f : 0.12	d : 0.09	! : 0.07	" : 0.03	# : 0.03	b : 0.03	i : 0.03	a : 0.01	[ : 0.01	= : 0.01	
e : 0.22	c : 0.14	g : 0.14	f : 0.12	d : 0.07	[ : 0.07	" : 0.05	! : 0.03	b : 0.03	i : 0.03	a : 0.01	= : 0.01	
e : 0.18	g : 0.14	f : 0.12	! : 0.12	d : 0.09	[ : 0.09	c : 0.07	" : 0.05	i : 0.03	b : 0.01	a : 0.01	= : 0.01	
c : 0.18	g : 0.14	f : 0.12	e : 0.12	[ : 0.12	d : 0.09	! : 0.09	i : 0.03	= : 0.01	" : 0.01	a : 0.01	
b : 0.24	c : 0.20	g : 0.14	f : 0.11	d : 0.09	e : 0.09	[ : 0.05	i : 0.03	= : 0.01	
b : 0.24	c : 0.20	g : 0.12	d : 0.09	e : 0.07	o : 0.07	f : 0.05	a : 0.03	i : 0.03	m : 0.01	= : 0.01	l : 0.01	
m : 0.74	o : 0.11	c : 0.05	l : 0.03	g : 0.01	i : 0.01	n : 0.01	
m : 0.75	o : 0.11	l : 0.07	c : 0.01	i : 0.01	n : 0.01	
m : 0.77	o : 0.11	l : 0.07	n : 0.01	g : 0.01	
m : 0.75	o : 0.11	l : 0.05	g : 0.03	e : 0.01	n : 0.01	
b : 0.22	c : 0.16	g : 0.12	o : 0.11	e : 0.09	d : 0.07	f : 0.05	a : 0.03	m : 0.03	= : 0.01	l : 0.01	n : 0.01	i : 0.01	
b : 0.22	c : 0.20	g : 0.12	f : 0.11	d : 0.09	e : 0.09	] : 0.03	o : 0.03	i : 0.03	m : 0.01	= : 0.01	
c : 0.27	g : 0.14	f : 0.12	e : 0.11	d : 0.09	] : 0.09	2 : 0.03	i : 0.03	b : 0.01	= : 0.01	4 : 0.01	3 : 0.01	
g : 0.14	f : 0.12	e : 0.12	c : 0.12	d : 0.11	] : 0.11	b : 0.07	2 : 0.03	a : 0.03	i : 0.03	= : 0.01	4 : 0.01	3 : 0.01	
c : 0.18	e : 0.14	g : 0.14	f : 0.12	] : 0.11	b : 0.05	d : 0.05	2 : 0.03	4 : 0.03	i : 0.03	a : 0.01	= : 0.01	3 : 0.01	
f : 0.16	c : 0.12	g : 0.12	e : 0.11	2 : 0.09	4 : 0.07	] : 0.07	d : 0.07	a : 0.05	i : 0.03	b : 0.01	= : 0.01	3 : 0.01	
c : 0.14	g : 0.14	d : 0.12	e : 0.12	f : 0.11	2 : 0.09	4 : 0.07	a : 0.05	i : 0.03	] : 0.01	b : 0.01	= : 0.01	3 : 0.01	
d : 0.16	] : 0.16	e : 0.12	2 : 0.11	4 : 0.09	c : 0.09	g : 0.07	f : 0.05	3 : 0.03	i : 0.03	h : 0.01	= : 0.01	
d : 0.22	c : 0.16	e : 0.14	2 : 0.09	4 : 0.09	g : 0.07	f : 0.05	3 : 0.03	i : 0.03	h : 0.01	= : 0.01	a : 0.01	b : 0.01	
d : 0.18	e : 0.16	c : 0.14	g : 0.09	4 : 0.07	f : 0.07	] : 0.05	b : 0.03	3 : 0.03	2 : 0.03	a : 0.01	h : 0.01	= : 0.01	i : 0.01	5 : 0.01	
e : 0.16	d : 0.16	4 : 0.11	c : 0.11	g : 0.09	f : 0.09	2 : 0.07	] : 0.05	b : 0.03	3 : 0.03	8 : 0.01	h : 0.01	5 : 0.01	
e : 0.16	g : 0.11	] : 0.11	d : 0.11	f : 0.11	2 : 0.09	c : 0.09	4 : 0.09	8 : 0.01	h : 0.01	3 : 0.01	: : 0.01	b : 0.01	5 : 0.01	

#score	548.193087419109
#seq	54
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_CDS_m1_run2.txt

#BEAR
dddd[ccccccmmmmccc333cccdddd	chr1:33237159-33237407(+)$1	248	15	43	11.0650
gg[dddd[aooooooadddd22gggggg	chr19:3543253-3543523(-)$1	270	152	180	9.3197
a!!a[bb[cccmmmmccc]bb]a22acc	chr17:46620728-46621034(-)$1	306	190	218	10.2648
ddd####cccnnnnnccc333dddd]bb	chr19:1584474-1584752(-)$1	278	14	42	10.4487
!a!!gggggggmmmmggggggg22a22c	chr11:770243-770510(-)$1	267	55	83	8.4138
dd[dddd[cccmmmmccc333dddd]dd	chrX:118925436-118925683(-)$1	247	170	198	11.6238
gggg[ccc[bbmmmmbbcccggggggg]	chr17:79826314-79826562(-)$1	248	181	209	9.3548
fffff####bbnnnnnbb4444ffffff	chr12:120534715-120534967(-)$1	252	125	153	9.5183
fffff####bbnnnnnbb4444ffffff	chr12:120534542-120534845(-)$1	303	3	31	9.5183
ggggggg[cccnnnnncccggggggga]	chr19:55998518-55998769(+)$1	251	141	169	9.7496
ff[ccc!!aooooooa]cccffffff]d	chr16:88762922-88763173(-)$1	251	104	132	9.6100
"""ccc!!bboooooobb]ccceeeee:	chr11:64894264-64894588(+)$1	324	197	225	8.8959
b[iiiiiiiiinnnnniiiiiiiii]bb	chr19:6413633-6413849(-)$1	216	161	189	8.4792
d####ddddoooooodddd4444dddd:	chr19:45854170-45854400(-)$1	230	162	190	8.3044
eeeee"""cccooooooccc]eeeee::	chr11:66392950-66393214(+)$1	264	160	188	8.7136
hh!!bb!!cccmmmmccc22bb22hhhh	chr1:16555447-16555676(-)$1	229	9	37	9.6145
cccbb!!ddddmmmmdddd333bb]ccc	chr19:51301519-51301788(-)$1	269	155	183	9.8622
c[dddd!!cccmmmmccc22dddd]ccc	chr21:46359946-46360180(+)$1	234	6	34	10.7526
dd[ccc!!cccmmmmccc4444ccc]dd	chr19:8468333-8468646(+)$1	313	11	39	12.6960
dd[ddddbboooooobb4444ddddddd	chr19:11256968-11257246(-)$1	278	135	163	8.3588
eeeee####ccclllccc4444eeeee:	chr12:120534784-120535015(-)$1	231	3	31	9.9175
bb[dddd[cccooooooccc]dddd]bb	chr20:61919625-61919947(+)$1	322	144	172	9.6026
ee!!bb!!cccnnnnnccc22bbeeeee	chr19:6413391-6413709(-)$1	318	117	145	9.8223
bb!!bb[ddddmmmmddddbb4444bbg	chr19:1581102-1581368(-)$1	266	2	30	8.0749
cc[a"""ddddoooooodddd]acccbb	chr16:1496204-1496491(-)$1	287	97	125	9.3167
[dddd!!ddddmmmmdddd]dddd]bb]	chrX:152953802-152954150(+)$1	348	198	226	8.7783
fffff!!ddddmmmmdddd333ffffff	chr4:2939873-2940167(-)$1	294	145	173	10.0243
ccffffffcccmmmmccc]ffffff]cc	chr17:79890698-79890962(-)$1	264	224	252	9.4097
bbccc[a[cccnnnnnccc]a]ccc888	chr9:136208440-136208722(-)$1	282	75	103	8.6971
cc[gggggggmmmmggggggg]ccc]ff	chr7:4799037-4799284(+)$1	247	211	239	8.1420
[dddd[a[cccmmmmccc]addddhhhh	chr17:76117555-76117812(-)$1	257	179	207	9.9608
eeeee"""bboooooobb4444eeeeed	chr17:46620941-46621206(-)$1	265	141	169	10.3588
e"""ccc[cccnnnnnccc22ccc]eee	chr19:47778290-47778560(+)$1	270	73	101	10.4390
fffbb"""cccmmmmcccbb]ffffff]	chr1:15736387-15736695(+)$1	308	50	78	10.1018
cc####eeeeemmmmeeeeeccc]a]ee	chr1:11849358-11849599(-)$1	241	147	175	8.3494
gggg[ccc[bbmmmmbbcccggggggg]	chr17:79826162-79826493(-)$1	331	112	140	9.3548
eeee[ccccccmmmmccc4444ccc]ee	chr1:11849279-11849525(-)$1	246	56	84	11.6230
c!!a!!bba[ammmma]a]bb22a22cc	chr17:79826389-79826628(-)$1	239	74	102	9.0076

#otherMatches

#Seq PSSM
AGCCCUGAGCCUGCAGGCCCUUCAGGCU	chr1:33237159-33237407(+)$1	248	15	43	11.0650
UUCCCAGGCGUCCGAGUUGGUCAGGCCU	chr19:3543253-3543523(-)$1	270	152	180	9.3197
GGACAUCUGCGACCCUGCCGAGGAAccc	chr17:46620728-46621034(-)$1	306	190	218	10.2648
CCCCUGAGGCUccgcgccgccggggcgc	chr19:1584474-1584752(-)$1	278	14	42	10.4487
GCCCAGCCGGCGGGAGCUGGCUCAGAAC	chr11:770243-770510(-)$1	267	55	83	8.4138
CCCCGGGGUGGCUUCCCAAAACCCGAGG	chrX:118925436-118925683(-)$1	247	170	198	11.6238
UGGACGUGUGCGUCUGCUGCUCCGGGGU	chr17:79826314-79826562(-)$1	248	181	209	9.3548
GUGCCCCCUCCUCCCCGGCCAAGGCGCC	chr12:120534715-120534967(-)$1	252	125	153	9.5183
GUGCCCCCUCCUCCCCGGCCAAGGCGCC	chr12:120534542-120534845(-)$1	303	3	31	9.5183
CCCCAGGCUGGGAGAGCUAUCUGGGGAG	chr19:55998518-55998769(+)$1	251	141	169	9.7496
UGCGGGAGGGGACGGCACCCCAGUGGUG	chr16:88762922-88763173(-)$1	251	104	132	9.6100
CAAAGGCCUGAGACCCCACCCUGCCCCC	chr11:64894264-64894588(+)$1	324	197	225	8.8959
UGUUUUUAAAAUAAACUUUUAAAAAGGA	chr19:6413633-6413849(-)$1	216	161	189	8.4792
GUGUUGAGUGACAUGGCUCUCUUCAUUC	chr19:45854170-45854400(-)$1	230	162	190	8.3044
CGACGAUCCCUACAAAAAGGCUGUCGCC	chr11:66392950-66393214(+)$1	264	160	188	8.7136
ggugugguggcaagcgccuguaauccca	chr1:16555447-16555676(-)$1	229	9	37	9.6145
CCCGCCAGGCCACCAGGCUCAUGCUGGG	chr19:51301519-51301788(-)$1	269	155	183	9.8622
UGCCGUGCUCCGCCGGGAAGAUGGGGAA	chr21:46359946-46360180(+)$1	234	6	34	10.7526
ACGACGAGUCCCCGGGGAACAACGUGGU	chr19:8468333-8468646(+)$1	313	11	39	12.6960
CUCAGCUCCUAGAGUGGCCUCAGCUAGG	chr19:11256968-11257246(-)$1	278	135	163	8.3588
CCUCCCCCAGCCCGAGGCCCACGGAGGU	chr12:120534784-120535015(-)$1	231	3	31	9.9175
GCCUGGGCCUGUGCUGUCAGACCCGCGU	chr20:61919625-61919947(+)$1	322	144	172	9.6026
GUAUUGCAGGACCCCUUCCCCCAGCAGC	chr19:6413391-6413709(-)$1	318	117	145	9.8223
GGCAGCUCCCAUUCUUGGGGCAUUUCCG	chr19:1581102-1581368(-)$1	266	2	30	8.0749
CUCGUCUAGGUUUCUUUACCUCCAGGGA	chr16:1496204-1496491(-)$1	287	97	125	9.3167
ccggcccggccgugcggcccgccgAGGC	chrX:152953802-152954150(+)$1	348	198	226	8.7783
accugccuuggccccccaauuauaggug	chr4:2939873-2940167(-)$1	294	145	173	10.0243
CCCCUCUGUGAAGGCUCAGCAGAGGUGG	chr17:79890698-79890962(-)$1	264	224	252	9.4097
GUGGUCGUGUUUUCUUAACUCUGCUUCU	chr9:136208440-136208722(-)$1	282	75	103	8.6971
CCUUCGCAGGACCCUUUGUGGUGGUCCC	chr7:4799037-4799284(+)$1	247	211	239	8.1420
CGGGGAUGGGGGGAGCCUGGCCCUUGCU	chr17:76117555-76117812(-)$1	257	179	207	9.9608
CUGCGCACGGCUUACACCAACACGCAGC	chr17:46620941-46621206(-)$1	265	141	169	10.3588
CACCCGCCGGCCCACAGCCCAGCGCGCC	chr19:47778290-47778560(+)$1	270	73	101	10.4390
CCGGCCAAGGCGAGUGCCGCGCGGGCCA	chr1:15736387-15736695(+)$1	308	50	78	10.1018
UGCUCUGGCGGCUUCCUGUCCACUCUCG	chr1:11849358-11849599(-)$1	241	147	175	8.3494
UGGACGUGUGCGUCUGCUGCUCCGGGGU	chr17:79826162-79826493(-)$1	331	112	140	9.3548
AGCCCCCAACCCCGCGGUGCUCUGGCGG	chr1:11849279-11849525(-)$1	246	56	84	11.6230
CCUCCUCGGUCUCCUGUCUCGUUGCUGC	chr17:79826389-79826628(-)$1	239	74	102	9.0076

#DB
((((.((((((....)))...)))))))	chr1:33237159-33237407(+)$1	1	15	43	11.0650
((.((((.(......)))))..))))))	chr19:3543253-3543523(-)$1	1	152	180	9.3197
(..(.((.(((....))).)).)..)))	chr17:46620728-46621034(-)$1	1	190	218	10.2648
(((....(((.....)))...)))).))	chr19:1584474-1584752(-)$1	1	14	42	10.4487
.(..(((((((....)))))))..)..)	chr11:770243-770510(-)$1	1	55	83	8.4138
((.((((.(((....)))...)))).))	chrX:118925436-118925683(-)$1	1	170	198	11.6238
((((.(((.((....)))))))))))).	chr17:79826314-79826562(-)$1	1	181	209	9.3548
(((((....((.....))....))))))	chr12:120534715-120534967(-)$1	1	125	153	9.5183
(((((....((.....))....))))))	chr12:120534542-120534845(-)$1	1	3	31	9.5183
(((((((.(((.....))))))))))).	chr19:55998518-55998769(+)$1	1	141	169	9.7496
((.(((..(......).))))))))).)	chr16:88762922-88763173(-)$1	1	104	132	9.6100
...(((..((......)).)))))))).	chr11:64894264-64894588(+)$1	1	197	225	8.8959
(.(((((((((.....))))))))).))	chr19:6413633-6413849(-)$1	1	161	189	8.4792
(....((((......))))....)))).	chr19:45854170-45854400(-)$1	1	162	190	8.3044
(((((...(((......))).)))))..	chr11:66392950-66393214(+)$1	1	160	188	8.7136
((..((..(((....)))..))..))))	chr1:16555447-16555676(-)$1	1	9	37	9.6145
(((((..((((....))))...)).)))	chr19:51301519-51301788(-)$1	1	155	183	9.8622
(.((((..(((....)))..)))).)))	chr21:46359946-46360180(+)$1	1	6	34	10.7526
((.(((..(((....)))....))).))	chr19:8468333-8468646(+)$1	1	11	39	12.6960
((.((((((......))....)))))))	chr19:11256968-11257246(-)$1	1	135	163	8.3588
(((((....(((...)))....))))).	chr12:120534784-120535015(-)$1	1	3	31	9.9175
((.((((.(((......))).)))).))	chr20:61919625-61919947(+)$1	1	144	172	9.6026
((..((..(((.....)))..)))))))	chr19:6413391-6413709(-)$1	1	117	145	9.8223
((..((.((((....))))))....))(	chr19:1581102-1581368(-)$1	1	2	30	8.0749
((.(...((((......)))).))))))	chr16:1496204-1496491(-)$1	1	97	125	9.3167
.((((..((((....)))).)))).)).	chrX:152953802-152954150(+)$1	1	198	226	8.7783
(((((..((((....))))...))))))	chr4:2939873-2940167(-)$1	1	145	173	10.0243
(((((((((((....))).)))))).))	chr17:79890698-79890962(-)$1	1	224	252	9.4097
(((((.(.(((.....))).).)))...	chr9:136208440-136208722(-)$1	1	75	103	8.6971
((.(((((((....))))))).))).))	chr7:4799037-4799284(+)$1	1	211	239	8.1420
.((((.(.(((....))).)))))))))	chr17:76117555-76117812(-)$1	1	179	207	9.9608
(((((...((......))....))))))	chr17:46620941-46621206(-)$1	1	141	169	10.3588
(...(((.(((.....)))..))).)))	chr19:47778290-47778560(+)$1	1	73	101	10.4390
(((((...(((....))))).)))))).	chr1:15736387-15736695(+)$1	1	50	78	10.1018
((....(((((....)))))))).).))	chr1:11849358-11849599(-)$1	1	147	175	8.3494
((((.(((.((....)))))))))))).	chr17:79826162-79826493(-)$1	1	112	140	9.3548
((((.((((((....)))....))).))	chr1:11849279-11849525(-)$1	1	56	84	11.6230
(..(..(((.(....).).))..)..))	chr17:79826389-79826628(-)$1	1	74	102	9.0076

#PSSM
c : 0.18	d : 0.15	e : 0.15	f : 0.13	g : 0.10	b : 0.10	[ : 0.05	a : 0.02	! : 0.02	" : 0.02	h : 0.02	
d : 0.18	f : 0.13	e : 0.13	c : 0.13	g : 0.10	b : 0.07	! : 0.05	" : 0.05	[ : 0.05	a : 0.02	# : 0.02	h : 0.02	
[ : 0.21	! : 0.15	d : 0.13	f : 0.13	e : 0.10	g : 0.07	" : 0.05	# : 0.05	c : 0.05	i : 0.02	
d : 0.21	! : 0.10	g : 0.10	f : 0.10	c : 0.10	e : 0.10	a : 0.07	# : 0.07	b : 0.05	i : 0.02	" : 0.02	
d : 0.18	[ : 0.13	c : 0.13	b : 0.13	f : 0.10	# : 0.07	g : 0.07	e : 0.07	i : 0.02	" : 0.02	! : 0.02	
c : 0.21	d : 0.15	# : 0.13	b : 0.10	" : 0.10	! : 0.10	g : 0.07	[ : 0.05	i : 0.02	f : 0.02	
! : 0.23	c : 0.13	d : 0.13	# : 0.10	" : 0.10	g : 0.07	b : 0.05	a : 0.05	i : 0.02	[ : 0.02	f : 0.02	e : 0.02	
[ : 0.21	! : 0.15	d : 0.15	c : 0.13	# : 0.07	" : 0.07	g : 0.05	b : 0.05	i : 0.02	f : 0.02	e : 0.02	
c : 0.44	d : 0.15	a : 0.07	# : 0.07	b : 0.07	g : 0.05	[ : 0.05	i : 0.02	e : 0.02	
c : 0.47	b : 0.15	d : 0.13	o : 0.10	g : 0.05	i : 0.02	e : 0.02	[ : 0.02	
c : 0.44	o : 0.15	d : 0.13	b : 0.10	n : 0.02	g : 0.02	i : 0.02	m : 0.02	e : 0.02	a : 0.02	
m : 0.52	o : 0.23	n : 0.21	c : 0.02	
m : 0.52	o : 0.23	n : 0.21	l : 0.02	
m : 0.52	o : 0.23	n : 0.21	l : 0.02	
m : 0.49	o : 0.23	n : 0.21	l : 0.02	g : 0.02	
c : 0.31	n : 0.18	o : 0.13	d : 0.13	a : 0.07	b : 0.07	g : 0.05	e : 0.02	
c : 0.42	b : 0.18	d : 0.15	o : 0.07	g : 0.05	] : 0.05	i : 0.02	e : 0.02	
c : 0.55	d : 0.18	b : 0.10	g : 0.05	i : 0.02	4 : 0.02	e : 0.02	a : 0.02	
c : 0.23	d : 0.18	4 : 0.18	] : 0.13	3 : 0.07	g : 0.05	2 : 0.05	i : 0.02	b : 0.02	e : 0.02	
4 : 0.21	c : 0.15	3 : 0.13	b : 0.10	2 : 0.10	g : 0.07	d : 0.05	] : 0.05	i : 0.02	f : 0.02	a : 0.02	e : 0.02	
4 : 0.21	3 : 0.13	g : 0.13	b : 0.10	d : 0.10	2 : 0.07	] : 0.07	f : 0.05	c : 0.05	i : 0.02	a : 0.02	
4 : 0.21	d : 0.18	c : 0.10	] : 0.10	g : 0.10	f : 0.07	2 : 0.05	b : 0.05	3 : 0.05	i : 0.02	e : 0.02	
c : 0.18	d : 0.18	f : 0.15	g : 0.10	e : 0.10	2 : 0.07	a : 0.05	4 : 0.05	b : 0.05	i : 0.02	
d : 0.21	c : 0.18	f : 0.15	e : 0.13	g : 0.10	2 : 0.07	i : 0.02	b : 0.02	4 : 0.02	] : 0.02	a : 0.02	
d : 0.15	f : 0.15	e : 0.13	c : 0.13	g : 0.10	] : 0.10	2 : 0.05	a : 0.05	h : 0.05	i : 0.02	4 : 0.02	
] : 0.23	e : 0.15	f : 0.13	g : 0.10	d : 0.07	c : 0.07	2 : 0.05	h : 0.05	b : 0.05	a : 0.02	8 : 0.02	
e : 0.18	b : 0.15	d : 0.13	c : 0.13	f : 0.13	g : 0.07	h : 0.05	2 : 0.02	a : 0.02	] : 0.02	: : 0.02	8 : 0.02	
d : 0.15	c : 0.15	] : 0.13	b : 0.10	f : 0.10	: : 0.10	e : 0.10	g : 0.05	h : 0.05	8 : 0.02	

#score	365.546632819521
#seq	38
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_CDS_m1_run1.txt

#BEAR
!!a[ccc"""bb[ddddllldddd]bb333ccca22iiii	chr1:248020655-248020940(+)$1	285	194	234	13.7483
!!bb[eeeee"""ddddnnnnnddddeeeeebb333dddd	chr9:140446425-140446710(+)$1	285	188	228	12.7985
cc!!eeeee[a!!ddddoooooodddd22aeeeeeccc22	chr4:48343876-48344125(+)$1	249	82	122	15.1776
[gggggggcccvvvvvvvvvvvvvccc333ggggggg]cc	chr1:87379610-87379897(-)$1	287	206	246	11.8445
ggggffffff!!a[ddddmmmmddddaffffff]gggggg	chr8:145149889-145150126(+)$1	237	100	140	11.6553
ffdddd[ccc[bb[cccoooooocccbb]cccdddd]fff	chr7:117824231-117824541(+)$1	310	4	44	12.5830
eee[a!!bb[a!!eeeeennnnneeeee]a]bb22aeeee	chr11:65834873-65835129(+)$1	256	130	170	11.8147
dddd!!gggggggacccooooooccc]a]ggggggg]ddd	chr7:6071033-6071337(-)$1	304	72	112	14.6540
!!dddd"""bb!!eeeeennnnneeeee22bb333dddd2	chr2:10583304-10583535(-)$1	231	103	143	12.5431
eee####==========oooooo==========eeeee]f	chr2:74691996-74692401(-)$1	405	137	177	14.6534
!!dddd"""bb!!eeeeennnnneeeee22bb333dddd2	chr2:10583335-10583540(-)$1	205	108	148	12.5431
ggggggg!!ccceeeeeooooooeeeee22ccc666666g	chr2:179395427-179395692(+)$1	265	115	155	12.4919
::eeeee[iiiiiiiiiooooooiiiiiiiiieeeeeccc	chr17:1552769-1553060(-)$1	291	83	123	12.0048
dd!!ddddbbccc[cccooooooccc]ccc]bb]dddd33	chr1:1689651-1689926(-)$1	275	35	75	13.5144
==========####cccmmmmccc4444===========:	chr17:80789333-80789590(+)$1	257	23	63	13.6075
iiiiiii[ccc!!acccooooooccc]a22ccciiiiiii	chr17:80788533-80788836(+)$1	303	145	185	17.4057
hhhh[dddd[gggggggooooooggggggg22dddd]hhh	chr19:34919232-34919495(+)$1	263	79	119	11.8530
!!ffffff####ccc[ccclllcccccc333ffffff22b	chr11:108093067-108093362(-)$1	295	103	143	12.5252
[iiiiiiiii"""ddddoooooodddd333iiiiiiiii]	chr3:99567351-99567606(+)$1	255	99	139	18.7563
===!!ccczzzzzzzzzzzzzzzzzccc22==========	chr7:6075407-6075693(-)$1	286	10	50	11.4022
[iiiiiiiii!!ddddbbnnnnnbb]dddd22iiiiiiii	chr6:31371352-31371637(+)$1	285	2	42	12.2563
!!a[bbccc!!cccrrrrrrrrrcccccc]bb]a22bb]e	chr7:104752719-104752984(-)$1	265	169	209	11.3862
===========[ccc[annnnna]ccc]============	chr7:141478455-141478709(+)$1	254	50	90	15.2046
cc[a!!dddd####ddddmmmmdddd4444dddd22accc	chr9:101569942-101570380(+)$1	438	328	368	12.9689
ffffffffffccc[cccooooooccc]ccc]ffffff]ff	chr8:145149926-145150185(+)$1	259	137	177	13.2681
"""ccc[gggggggeeeeellleeeee4444gggggggcc	chr17:29622717-29623003(+)$1	286	163	203	13.3622
Fbb[bb"""ccc[ddddnnnnnddddccc333bb]bbfff	chr17:80789598-80789920(+)$1	322	55	95	12.3528
Bccc[ggggggg!!cccooooooccc]ggggggg]ccc::	chr9:131418761-131419066(-)$1	305	206	246	13.4244
!!iiiiiiiii[a[ccclllccca]iiiiiiiii22ccce	chr14:103593470-103593864(+)$1	394	56	96	13.9802
ee[ggggggg[eeeeecccnnnnnccc333eeeee]gggg	chr17:7137444-7137760(-)$1	316	79	119	12.2645
gggggg!!ccc"""ddddllldddd333cccgggggggbb	chr21:46281535-46281798(-)$1	263	19	59	14.1660
hhhh]bbdddd[a[cccooooooccc]a]dddddddd[gg	chr15:28519468-28519705(-)$1	237	89	129	12.6202
ff"""ccc[bb"""eeeeellleeeee333bb]ccc4444	chr3:196304350-196304621(+)$1	271	59	99	13.1620
[bb[ccc[ccca[a[ddddmmmmdddd]a]a]ccc]cccb	chr2:97482543-97482864(+)$1	321	152	192	12.1578
[bb"""dddd!!cccrrrrrrrrrccc4444ddddbb]gg	chr7:923743-923955(+)$1	212	20	60	11.6962
cc[hhhhhhhh"""eeeeellleeeee333hhhhhhhhcc	chr11:61644789-61645083(-)$1	294	226	266	11.9905
&&eeeee!!accc[cccoooooocccccc]a22eeeee88	chr18:8609607-8609929(+)$1	322	261	301	12.3650
bb[ccc[eeeee[ddddnnnnnddddeeeeeccc]bbggg	chr6:32940754-32940965(+)$1	211	8	48	11.8975
d[a[ccc[ccc!!dddd[ccclllccc22dddd]ccc]cc	chr17:74261444-74261704(+)$1	260	40	80	12.0855
dd[ggggggg"""ddddooooooddddggggggg22dddd	chr20:5986972-5987288(+)$1	316	65	105	15.9611
[ccc[bb!!ddddddddoooooodddd333dddd]bb]cc	chr19:8550707-8551005(+)$1	298	143	183	15.4161
cc[a[ggggggg[ddddlllddddggggggg]a]ccceee	chr7:129710288-129710649(+)$1	361	96	136	12.4654
""ccc####ccc[ddddoooooodddd]cccccc22dddd	chr2:11484151-11484474(-)$1	323	276	316	15.6345
""iiiiiiiii"""cccmmmmccc]iiiiiiiii333bb:	chr19:35766585-35766954(+)$1	369	138	178	12.6779
[ccc[bb!!ddddddddoooooodddd333dddd]bb]cc	chr19:8550805-8551049(+)$1	244	45	85	15.4161
cc!!eeeee####ddddmmmmddddeeeee22ccc]ccc]	chr9:37784684-37785100(-)$1	416	212	252	11.9110
ffffffffffccc[cccooooooccc]ccc]ffffff]ff	chr8:145149985-145150240(+)$1	255	78	118	13.2681
eeeeccc!!ccc[ddddnnnnndddd]ccc22ccc333ee	chr7:6075349-6075583(-)$1	234	64	104	13.3811
!!==========[cccqqqqqqqqccc==========333	chr6:90503375-90503656(-)$1	281	121	161	12.8679
ggggggg[cccdddd[aooooooa]dddd]ccc22ggggg	chr16:2301257-2301524(-)$1	267	127	167	14.7054
gg[eeeee[bb[eeeeeooooooeeeee]bb22eeeee]g	chr19:8551041-8551271(+)$1	230	76	116	12.8883

#otherMatches

#Seq PSSM
AGGACCUGAGCCGCUUCUGCGAGGAGGACGAGGCGGCGCU	chr1:248020655-248020940(+)$1	285	194	234	13.7483
GCGCAGCUUCAGGGGCCGCAAGGGCCGGGGCGCCAAGGGC	chr9:140446425-140446710(+)$1	285	188	228	12.7985
CCUUGGGCCUCAGCGCCAAGUCGGGCGGCGGGCCCGGGUC	chr4:48343876-48344125(+)$1	249	82	122	15.1776
GCAGCUGCCACAGGGAGAGUAGGAGUGAUUGCAGCUGAGA	chr1:87379610-87379897(-)$1	287	206	246	11.8445
GGAGGAGGCCAAGAUGGCGGCAGCUGCGGCUUCGCUUCGC	chr8:145149889-145150126(+)$1	237	100	140	11.6553
GUCGGCACCGCUGCGUUACCCGGAACCGCCGGGCCGAACA	chr7:117824231-117824541(+)$1	310	4	44	12.5830
GGAAGGCCUGGAAGUGUGAAUUACAUACAUGAGAACUCCA	chr11:65834873-65835129(+)$1	256	130	170	11.8147
GCCUGACUUUUUUCCAGAAGUGACUGAGCAGAAAAGAGGG	chr7:6071033-6071337(-)$1	304	72	112	14.6540
UUGGUUUCAGCAUGUAUCUGCUUGAUAUUGGCGGUGGCUU	chr2:10583304-10583535(-)$1	231	103	143	12.5431
gcgUAGCACGGCUGGAGGAGUGGCUCUGGCCGUCGUGGUC	chr2:74691996-74692401(-)$1	405	137	177	14.6534
UUGGUUUCAGCAUGUAUCUGCUUGAUAUUGGCGGUGGCUU	chr2:10583335-10583540(-)$1	205	108	148	12.5431
UGGGUGAUACGGCUUUCGGGUGAGAAGGUUCUGGAGAUUU	chr2:179395427-179395692(+)$1	265	115	155	12.4919
AUCUGGCGCGCCGUUUCGGGCCGGAGGCGGCGGCCGGGCU	chr17:1552769-1553060(-)$1	291	83	123	12.0048
UCGCGAGCCACAUGUGUGACCCGGCAGGUGCUGAGCUCAU	chr1:1689651-1689926(-)$1	275	35	75	13.5144
UCUGGCCUGUAAAAUCCGUAAGGAAUCGGCAGGUUAGAGG	chr17:80789333-80789590(+)$1	257	23	63	13.6075
CUGGAAGGCGCGGCCUCCGAGACGAGAGAGGCGCUUCCGG	chr17:80788533-80788836(+)$1	303	145	185	17.4057
CCGCCGCGGCUCGUGGUUGUCCCGCCAUGGCACUGUCGCG	chr19:34919232-34919495(+)$1	263	79	119	11.8530
UGUUACCCUCGGACGUAGCCCGGCUUGUAUUGGGUAAGCG	chr11:108093067-108093362(-)$1	295	103	143	12.5252
UGUUGGUUCUGGGGAGCGUCCCUGCUCAGGAGAGCUAGCU	chr3:99567351-99567606(+)$1	255	99	139	18.7563
GUUAAAAUGUUAACAUUUGCUUCAAAUUCAAGCAGGAGAU	chr7:6075407-6075693(-)$1	286	10	50	11.4022
GCGCCUUCUCCCCGGCCACUGCUUGAGCCGCUGAGAGGGU	chr6:31371352-31371637(+)$1	285	2	42	12.2563
UUUGUUGGUUAAACUGACUGUAUGUUGCUGAAGAUUGUCC	chr7:104752719-104752984(-)$1	265	169	209	11.3862
AUACGGAAAGGUCAGUCUACCUGUCUGCUUUUUUUGUGUU	chr7:141478455-141478709(+)$1	254	50	90	15.2046
CGUGCGGCUGCACCAGAUUAACAUCUACCUCAGCGACCGC	chr9:101569942-101570380(+)$1	438	328	368	12.9689
cgggcgcgcgugcccggggUCUGCUGUGCAGCGCGCGUCC	chr8:145149926-145150185(+)$1	259	137	177	13.2681
UGUUACUACUGAGGUUGAGAACCUCGAGACUUCUUAGUGU	chr17:29622717-29623003(+)$1	286	163	203	13.3622
UUUGUAGAUGAGAUUUUAUGUGGAAACUCUGGUGGAAGGA	chr17:80789598-80789920(+)$1	322	55	95	12.3528
CCUCGCAGUGGAGGGCCGUCCAGGGCAUCCGCUGGGAGAC	chr9:131418761-131419066(-)$1	305	206	246	13.4244
cggcggccgcuggaggcgccgcccgagcggcugcgccagg	chr14:103593470-103593864(+)$1	394	56	96	13.9802
UGUCCGCGCUCGCGCGUCGGUUUGCGGGUGUGCGCAGGCG	chr17:7137444-7137760(-)$1	316	79	119	12.2645
uccauucaacacaaacucagugagugccugugaugggcca	chr21:46281535-46281798(-)$1	263	19	59	14.1660
CUCUGACGCGUGUGUGCGCCCAGGCGAGGAUGCGGACCUC	chr15:28519468-28519705(-)$1	237	89	129	12.6202
CCCCAUUGCUCAGAGCACUGAUGGUGCAAGGACCAAGAUU	chr3:196304350-196304621(+)$1	271	59	99	13.1620
AGCGCGGGGCUCGUGUUCCUGGUGGGAGAGGUGGUGCCGG	chr2:97482543-97482864(+)$1	321	152	192	12.1578
ACCUCAGAUAGAAGCAUCCAGAACGCUGUAGUAUCGGCAA	chr7:923743-923955(+)$1	212	20	60	11.6962
GUAUGCGUGCAACAGUGUGGCUCACAUGUGUGCGCGCAGC	chr11:61644789-61645083(-)$1	294	226	266	11.9905
CGGCUCCCGCGGCGUGGGCAAGACCAGCCUGAUGGAGCGC	chr18:8609607-8609929(+)$1	322	261	301	12.3650
GUGGGGCGCCGUGUUGGGAGUACUGAGCGGCCCCGGCGCG	chr6:32940754-32940965(+)$1	211	8	48	11.8975
gugAGCGCGAGCCCCGGAGCCCCGGGCGGCCGGCCUCccg	chr17:74261444-74261704(+)$1	260	40	80	12.0855
GGAGGCUGCGUCCGGCCGCUCUUGGCUUGCGGCUGCCCGG	chr20:5986972-5987288(+)$1	316	65	105	15.9611
UGGCGUGGAGCGCAUGGGCCCUGCCAUCGAGCGCAUGGGC	chr19:8550707-8551005(+)$1	298	143	183	15.4161
CUGUCUCCUGGGUCUCUGGAGGAGCCCAGGAAGGAGGCUC	chr7:129710288-129710649(+)$1	361	96	136	12.4654
CAGGCGCGAGCCGCCAGAGGAAGCUGGAGGCGCUGAUCCG	chr2:11484151-11484474(-)$1	323	276	316	15.6345
auguguccuagcuuggcggaagcuucuggggcauugacga	chr19:35766585-35766954(+)$1	369	138	178	12.6779
UGGCGUGGAGCGCAUGGGCCCUGCCAUCGAGCGCAUGGGC	chr19:8550805-8551049(+)$1	244	45	85	15.4161
CCGUUGAGCCUGAAUGCUAGAGCGUGCUCGCGGGUGCGCG	chr9:37784684-37785100(-)$1	416	212	252	11.9110
cgggcgcgcgugcccggggUCUGCUGUGCAGCGCGCGUCC	chr8:145149985-145150240(+)$1	255	78	118	13.2681
GAGUCGGCCUGCUUUGCUUGAUGCAGUGCACACUGCAAGC	chr7:6075349-6075583(-)$1	234	64	104	13.3811
GACAGCUGUUUGUGGUGUGGUGCUGCCUGGGCAGCUGCCA	chr6:90503375-90503656(-)$1	281	121	161	12.8679
cggagcgggcggccggcggcggagacggcgcgcggcgcUU	chr16:2301257-2301524(-)$1	267	127	167	14.7054
UGGCAUUGAGCGCAUGGGCCUGGCCAUGGGUGGCGGUGGC	chr19:8551041-8551271(+)$1	230	76	116	12.8883

#DB
..(.(((...((.((((...)))).))...))))..))))	chr1:248020655-248020940(+)$1	1	194	234	13.7483
..((.(((((...((((.....)))))))))))...))))	chr9:140446425-140446710(+)$1	1	188	228	12.7985
((..(((((.(..((((......))))..)))))))))..	chr4:48343876-48344125(+)$1	1	82	122	15.1776
.((((((((((.............)))...))))))).))	chr1:87379610-87379897(-)$1	1	206	246	11.8445
((((((((((..(.((((....))))))))))).))))))	chr8:145149889-145150126(+)$1	1	100	140	11.6553
((((((.(((.((.(((......))))).))))))).)))	chr7:117824231-117824541(+)$1	1	4	44	12.5830
(((.(..((.(..(((((.....))))).).))..)))))	chr11:65834873-65835129(+)$1	1	130	170	11.8147
((((..(((((((((((......))).).))))))).)))	chr7:6071033-6071337(-)$1	1	72	112	14.6540
..((((...((..(((((.....)))))..))...)))).	chr2:10583304-10583535(-)$1	1	103	143	12.5431
(((....((((((((((......))))))))))))))).)	chr2:74691996-74692401(-)$1	1	137	177	14.6534
..((((...((..(((((.....)))))..))...)))).	chr2:10583335-10583540(-)$1	1	108	148	12.5431
(((((((..((((((((......)))))..)))......)	chr2:179395427-179395692(+)$1	1	115	155	12.4919
..(((((.(((((((((......))))))))))))))(((	chr17:1552769-1553060(-)$1	1	83	123	12.0048
((..(((((((((.(((......))).))).)).))))..	chr1:1689651-1689926(-)$1	1	35	75	13.5144
((((((((((....(((....)))....))))))))))).	chr17:80789333-80789590(+)$1	1	23	63	13.6075
(((((((.(((..((((......))).)..))))))))))	chr17:80788533-80788836(+)$1	1	145	185	17.4057
((((.((((.(((((((......)))))))..)))).)))	chr19:34919232-34919495(+)$1	1	79	119	11.8530
..((((((....(((.(((...))))))...))))))..)	chr11:108093067-108093362(-)$1	1	103	143	12.5252
.(((((((((...((((......))))...))))))))).	chr3:99567351-99567606(+)$1	1	99	139	18.7563
(((..(((.................)))..))))))))))	chr7:6075407-6075693(-)$1	1	10	50	11.4022
.(((((((((..((((((.....)).))))..))))))))	chr6:31371352-31371637(+)$1	1	2	42	12.2563
..(.(((((..(((.........)))))).)).)..)).)	chr7:104752719-104752984(-)$1	1	169	209	11.3862
(((((((((((.(((.(.....).))).))))))))))))	chr7:141478455-141478709(+)$1	1	50	90	15.2046
((.(..((((....((((....))))....))))..))))	chr9:101569942-101570380(+)$1	1	328	368	12.9689
(((((((((((((.(((......))).))).)))))).))	chr8:145149926-145150185(+)$1	1	137	177	13.2681
...(((.((((((((((((...)))))....)))))))))	chr17:29622717-29623003(+)$1	1	163	203	13.3622
(((.((...(((.((((.....)))))))...)).))(((	chr17:80789598-80789920(+)$1	1	55	95	12.3528
)(((.(((((((..(((......))).))))))).)))..	chr9:131418761-131419066(-)$1	1	206	246	13.4244
..(((((((((.(.(((...)))).)))))))))..))))	chr14:103593470-103593864(+)$1	1	56	96	13.9802
((.(((((((.((((((((.....)))...))))).))))	chr17:7137444-7137760(-)$1	1	79	119	12.2645
((((((..(((...((((...))))...))))))))))((	chr21:46281535-46281798(-)$1	1	19	59	14.1660
)))).))((((.(.(((......))).).))))((((.((	chr15:28519468-28519705(-)$1	1	89	129	12.6202
((...(((.((...(((((...)))))...)).)))....	chr3:196304350-196304621(+)$1	1	59	99	13.1620
.((.(((.((((.(.((((....)))).).).))).))))	chr2:97482543-97482864(+)$1	1	152	192	12.1578
.((...((((..(((.........)))....)))))).))	chr7:923743-923955(+)$1	1	20	60	11.6962
((.((((((((...(((((...)))))...))))))))))	chr11:61644789-61645083(-)$1	1	226	266	11.9905
..(((((..((((.(((......)))))).)..)))))..	chr18:8609607-8609929(+)$1	1	261	301	12.3650
((.(((.(((((.((((.....)))))))))))).))(((	chr6:32940754-32940965(+)$1	1	8	48	11.8975
(.(.(((.(((..((((.(((...)))..)))).))).))	chr17:74261444-74261704(+)$1	1	40	80	12.0855
((.(((((((...((((......)))))))))))..))))	chr20:5986972-5987288(+)$1	1	65	105	15.9611
.(((.((..((((((((......))))...)))).)).))	chr19:8550707-8551005(+)$1	1	143	183	15.4161
((.(.(((((((.((((...))))))))))).).)))(((	chr7:129710288-129710649(+)$1	1	96	136	12.4654
..(((....(((.((((......)))).))))))..))))	chr2:11484151-11484474(-)$1	1	276	316	15.6345
..(((((((((...(((....))).)))))))))...)).	chr19:35766585-35766954(+)$1	1	138	178	12.6779
.(((.((..((((((((......))))...)))).)).))	chr19:8550805-8551049(+)$1	1	45	85	15.4161
((..(((((....((((....)))))))))..))).))).	chr9:37784684-37785100(-)$1	1	212	252	11.9110
(((((((((((((.(((......))).))).)))))).))	chr8:145149985-145150240(+)$1	1	78	118	13.2681
(((((((..(((.((((.....)))).)))..)))...))	chr7:6075349-6075583(-)$1	1	64	104	13.3811
..((((((((((.(((........)))))))))))))...	chr6:90503375-90503656(-)$1	1	121	161	12.8679
(((((((.(((((((.(......).)))).)))..)))))	chr16:2301257-2301524(-)$1	1	127	167	14.7054
((.(((((.((.(((((......))))).))..))))).)	chr19:8551041-8551271(+)$1	1	76	116	12.8883

#PSSM
! : 0.15	[ : 0.13	c : 0.09	g : 0.09	f : 0.07	e : 0.07	d : 0.07	= : 0.05	" : 0.05	h : 0.03	: : 0.01	i : 0.01	F : 0.01	B : 0.01	& : 0.01	b : 0.01	
! : 0.15	c : 0.15	g : 0.11	f : 0.07	e : 0.07	b : 0.07	d : 0.05	= : 0.05	i : 0.05	" : 0.05	h : 0.03	: : 0.01	& : 0.01	[ : 0.01	
[ : 0.13	g : 0.09	e : 0.09	i : 0.09	b : 0.07	d : 0.07	= : 0.07	c : 0.07	a : 0.05	! : 0.05	f : 0.05	h : 0.03	" : 0.03	
g : 0.13	[ : 0.11	c : 0.11	i : 0.09	! : 0.07	d : 0.07	e : 0.07	= : 0.05	h : 0.05	f : 0.05	a : 0.03	" : 0.03	b : 0.01	# : 0.01	
c : 0.13	[ : 0.11	g : 0.11	e : 0.09	i : 0.09	f : 0.07	d : 0.07	! : 0.05	= : 0.05	b : 0.03	" : 0.03	a : 0.01	# : 0.01	] : 0.01	h : 0.01	
c : 0.15	g : 0.15	e : 0.11	d : 0.09	i : 0.09	b : 0.09	f : 0.07	! : 0.05	= : 0.05	# : 0.03	" : 0.01	h : 0.01	
g : 0.15	c : 0.13	e : 0.11	i : 0.09	f : 0.07	d : 0.07	[ : 0.05	" : 0.05	= : 0.05	b : 0.05	! : 0.03	# : 0.03	h : 0.01	
g : 0.13	! : 0.11	e : 0.09	[ : 0.09	d : 0.09	" : 0.07	f : 0.07	c : 0.07	= : 0.07	i : 0.07	b : 0.01	h : 0.01	# : 0.01	
c : 0.15	g : 0.11	! : 0.09	i : 0.09	" : 0.07	e : 0.07	= : 0.07	d : 0.07	f : 0.05	b : 0.03	# : 0.03	[ : 0.03	z : 0.01	h : 0.01	
c : 0.21	g : 0.11	b : 0.09	i : 0.09	d : 0.09	= : 0.07	[ : 0.05	f : 0.05	e : 0.03	# : 0.03	" : 0.01	z : 0.01	! : 0.01	h : 0.01	a : 0.01	
c : 0.27	b : 0.09	g : 0.09	! : 0.07	# : 0.07	" : 0.05	= : 0.05	i : 0.05	d : 0.05	a : 0.03	[ : 0.03	z : 0.01	h : 0.01	e : 0.01	
! : 0.17	c : 0.17	" : 0.13	g : 0.09	# : 0.07	[ : 0.07	d : 0.05	b : 0.03	= : 0.03	e : 0.03	v : 0.01	i : 0.01	z : 0.01	a : 0.01	
[ : 0.15	c : 0.15	" : 0.13	! : 0.13	d : 0.07	a : 0.05	g : 0.05	e : 0.05	# : 0.05	v : 0.01	b : 0.01	= : 0.01	i : 0.01	z : 0.01	
d : 0.31	[ : 0.15	e : 0.11	c : 0.09	" : 0.07	a : 0.05	# : 0.03	g : 0.03	v : 0.01	= : 0.01	i : 0.01	z : 0.01	! : 0.01	
d : 0.37	c : 0.31	e : 0.17	v : 0.01	= : 0.01	i : 0.01	g : 0.01	z : 0.01	r : 0.01	[ : 0.01	
d : 0.37	c : 0.25	e : 0.17	[ : 0.05	r : 0.03	v : 0.01	= : 0.01	i : 0.01	g : 0.01	z : 0.01	
d : 0.35	c : 0.27	e : 0.15	r : 0.03	a : 0.03	v : 0.01	= : 0.01	i : 0.01	g : 0.01	z : 0.01	b : 0.01	q : 0.01	
o : 0.41	e : 0.11	n : 0.09	d : 0.07	l : 0.05	m : 0.05	c : 0.03	r : 0.03	v : 0.01	z : 0.01	b : 0.01	[ : 0.01	q : 0.01	
o : 0.41	n : 0.17	m : 0.09	l : 0.07	c : 0.05	e : 0.05	r : 0.03	v : 0.01	z : 0.01	d : 0.01	q : 0.01	
o : 0.41	n : 0.19	l : 0.15	m : 0.11	r : 0.03	v : 0.01	z : 0.01	c : 0.01	q : 0.01	
o : 0.41	n : 0.19	m : 0.11	l : 0.09	d : 0.03	r : 0.03	c : 0.03	v : 0.01	z : 0.01	q : 0.01	
o : 0.41	n : 0.19	l : 0.09	d : 0.07	m : 0.05	c : 0.05	r : 0.03	v : 0.01	z : 0.01	q : 0.01	
o : 0.41	d : 0.19	n : 0.09	c : 0.07	e : 0.05	r : 0.03	v : 0.01	z : 0.01	a : 0.01	m : 0.01	l : 0.01	q : 0.01	
d : 0.33	c : 0.25	e : 0.15	a : 0.03	v : 0.01	= : 0.01	i : 0.01	g : 0.01	z : 0.01	b : 0.01	] : 0.01	n : 0.01	r : 0.01	l : 0.01	q : 0.01	
c : 0.33	d : 0.29	e : 0.15	] : 0.07	g : 0.03	= : 0.01	i : 0.01	4 : 0.01	z : 0.01	b : 0.01	
c : 0.35	d : 0.27	e : 0.17	i : 0.05	g : 0.03	b : 0.01	= : 0.01	4 : 0.01	] : 0.01	3 : 0.01	
e : 0.21	c : 0.21	d : 0.17	] : 0.15	i : 0.05	b : 0.03	4 : 0.03	g : 0.03	a : 0.01	= : 0.01	3 : 0.01	
3 : 0.17	c : 0.17	e : 0.15	4 : 0.07	g : 0.07	a : 0.05	i : 0.05	] : 0.05	2 : 0.03	= : 0.03	d : 0.03	f : 0.01	b : 0.01	
3 : 0.17	c : 0.17	2 : 0.13	] : 0.09	= : 0.07	g : 0.07	e : 0.05	i : 0.05	4 : 0.05	d : 0.03	f : 0.01	a : 0.01	
3 : 0.19	c : 0.13	g : 0.09	2 : 0.09	= : 0.07	] : 0.07	e : 0.05	i : 0.05	d : 0.05	4 : 0.05	a : 0.03	f : 0.01	b : 0.01	
c : 0.13	g : 0.09	b : 0.09	= : 0.09	d : 0.09	e : 0.07	] : 0.07	i : 0.07	2 : 0.07	3 : 0.03	4 : 0.03	a : 0.03	f : 0.01	h : 0.01	
c : 0.13	b : 0.13	g : 0.11	2 : 0.11	d : 0.11	= : 0.09	f : 0.07	i : 0.07	e : 0.03	] : 0.03	3 : 0.01	h : 0.01	
c : 0.17	d : 0.15	g : 0.11	= : 0.09	b : 0.07	f : 0.07	i : 0.07	e : 0.05	3 : 0.03	] : 0.03	2 : 0.03	h : 0.01	a : 0.01	
d : 0.13	e : 0.11	g : 0.11	c : 0.11	i : 0.09	] : 0.07	= : 0.07	3 : 0.05	f : 0.05	a : 0.03	2 : 0.03	6 : 0.01	b : 0.01	h : 0.01	
2 : 0.15	e : 0.11	c : 0.11	g : 0.09	d : 0.09	] : 0.09	3 : 0.07	= : 0.07	i : 0.05	f : 0.05	6 : 0.01	h : 0.01	
2 : 0.11	g : 0.11	d : 0.11	c : 0.09	b : 0.09	e : 0.07	= : 0.07	3 : 0.05	i : 0.05	f : 0.05	] : 0.05	a : 0.01	6 : 0.01	h : 0.01	
d : 0.13	c : 0.13	g : 0.11	b : 0.11	e : 0.09	i : 0.07	= : 0.07	] : 0.05	f : 0.05	3 : 0.03	6 : 0.01	a : 0.01	4 : 0.01	h : 0.01	
d : 0.13	c : 0.13	] : 0.13	g : 0.11	e : 0.09	i : 0.07	= : 0.05	f : 0.03	h : 0.03	b : 0.03	3 : 0.03	6 : 0.01	2 : 0.01	[ : 0.01	4 : 0.01	
c : 0.21	d : 0.11	g : 0.11	i : 0.07	f : 0.07	e : 0.05	] : 0.05	= : 0.05	2 : 0.03	3 : 0.03	b : 0.03	6 : 0.01	h : 0.01	: : 0.01	4 : 0.01	8 : 0.01	
c : 0.15	g : 0.15	f : 0.09	e : 0.09	d : 0.07	i : 0.05	2 : 0.05	: : 0.05	b : 0.05	3 : 0.03	] : 0.03	= : 0.03	h : 0.01	4 : 0.01	8 : 0.01	

#score	676.7807522981512
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_CDS_m3_run2.txt

#BEAR
ddd[ccc[bb[dddd[bbmmmmbbdddd]bb]ccc]dddd	chr3:52567604-52567906(-)$1	302	162	202	11.1850
dddd"""ggggggg[bbqqqqqqqqbb]ggggggg4444d	chr8:103424361-103424610(-)$1	249	188	228	9.4734
hhh[ffffffffffffbbnnnnnbb]ffffff]ffffff9	chr17:79860162-79860406(-)$1	244	159	199	11.3023
fffffffffff[ddddcccnnnnnccc]dddd]ffffffd	chr2:232575101-232575353(+)$1	252	130	170	10.5176
dd!!eeeeedddd"""ddddllldddddddd]eeeee]dd	chr3:49755246-49755516(+)$1	270	18	58	11.0313
dddd!!hhhhhhhh!!bblllbbhhhhhhhh22dddd22d	chr22:50873291-50873526(+)$1	235	54	94	9.8474
deeeee[hhhhhhhh[ccclllccc]hhhhhhhh]eeeee	chr11:65325159-65325437(-)$1	278	56	96	10.0834
gggggg"""dddd[bbbbnnnnnbb]bb]ddddggggggg	chr8:145687775-145688071(-)$1	296	28	68	11.5716
ddd!!ffffff"""ccc[bblllbb]ccc333ffffff22	chr16:2029100-2029389(+)$1	289	152	192	12.6527
ee[dddd[a[dddd[cccnnnnnccc]dddd]a]ddddee	chr17:74381116-74381378(+)$1	262	104	144	12.4143
dddd"""ccc!!bb[a[ccclllccc]a]bb22cccdddd	chr12:62996807-62997118(+)$1	311	202	242	12.6252
dddccc"""ffffff[bbnnnnnbb]ffffff4444ccc]	chr20:32251179-32251458(-)$1	279	2	42	13.2573
dccc!!ccc[bb!!fffffflllffffff22bb]ccc22c	chr1:36788412-36788683(+)$1	271	161	201	10.2096
cdddd!!ffffffrrrrrrrrrffffff4444dddd]ccc	chr17:41622773-41623039(+)$1	266	6	46	8.7271
eeeeffffff[dddd[bbnnnnnbb]dddd22ffffffcc	chr7:73021386-73021655(-)$1	269	185	225	13.5636
[a[ggggggg[a####bb[a"""eeeee!!ffffff!!ff	chr21:47565643-47565898(-)$1	255	88	128	8.5244
ddddccc####eeeeerrrrrrrrreeeee22ccc]dddd	chr19:538656-538923(+)$1	267	24	64	10.5177
ddd[eeeee[ccca[ddddmmmmdddd]a]ccc]eeeeed	chr1:27320446-27320740(+)$1	294	101	141	10.3898

#otherMatches

#Seq PSSM
gcggggcugcgggcggccgcucggcgcuggcugcugugcg	chr3:52567604-52567906(-)$1	302	162	202	11.1850
CCGAGGACCAGCUCAAUGACAGGUAAUAGGGCUGGCGGGU	chr8:103424361-103424610(-)$1	249	188	228	9.4734
GCCCCGCCGCUGGCUUGUACCACGCGAGGCCAGGCGGCGC	chr17:79860162-79860406(-)$1	244	159	199	11.3023
GGCCCGGAGCCGCUCGCCGGACAGCGGCCGAGGGGUUCCC	chr2:232575101-232575353(+)$1	252	130	170	10.5176
GGAAGCUGGGGGGCCAGGCACAGUGCUUCCCACCAGUAUC	chr3:49755246-49755516(+)$1	270	18	58	11.0313
GGCAAGGUCGGGGCCAGGAGGCCGCCCCGAUGGUGCCUGU	chr22:50873291-50873526(+)$1	235	54	94	9.8474
gggcgggggcggcggggcugcuggcgcugcugcugcugcu	chr11:65325159-65325437(-)$1	278	56	96	10.0834
gccgcuauguccggcgccgaggaggccggcgggggcggcc	chr8:145687775-145688071(-)$1	296	28	68	11.5716
GGUCGUCUCCUCCACGGAACCCCGUCCCGCUCAGGAGAGC	chr16:2029100-2029389(+)$1	289	152	192	12.6527
GGACUCCCCUCCCCCUGGCAGCCCCGAGGGGUGAGGAGCU	chr17:74381116-74381378(+)$1	262	104	144	12.4143
CUCGGGACGUGGCGGCAGCUCCUAGCGGGCGAAGCGCGGG	chr12:62996807-62997118(+)$1	311	202	242	12.6252
CCGCGCAAUCUGGGUGCCGCCGGGGAGCCCAGCCCAGCGC	chr20:32251179-32251458(-)$1	279	2	42	13.2573
CGGAUGUGCGCGUAGGCAGCCAGGCUGUUGCUGAGCAACU	chr1:36788412-36788683(+)$1	271	161	201	10.2096
UAGUCUGGGGGACGAGGUUGGGGUCCUCGGGUGACUCAGG	chr17:41622773-41623039(+)$1	266	6	46	8.7271
GUCGGGUGAGCUCCUGAUGGGAAAUGGGGGAUCUCAUCGC	chr7:73021386-73021655(-)$1	269	185	225	13.5636
GCGCGCCUUCGUGGGGGAGGUGGGUGCCCGCUCUGCGGCC	chr21:47565643-47565898(-)$1	255	88	128	8.5244
CCAGGAGCAUCCAGGGCACCUUCCAUCCUGCACUCGCUGG	chr19:538656-538923(+)$1	267	24	64	10.5177
ggcgcggcugcgggggcggggggccgcgcgcUGGAGCUGG	chr1:27320446-27320740(+)$1	294	101	141	10.3898

#DB
(((.(((.((.((((.((....)))))).)).))).))))	chr3:52567604-52567906(-)$1	1	162	202	11.1850
((((...(((((((.((........)).)))))))....)	chr8:103424361-103424610(-)$1	1	188	228	9.4734
(((.((((((((((((((.....)).)))))).)))))).	chr17:79860162-79860406(-)$1	1	159	199	11.3023
)))))((((((.(((((((.....))).)))).))))))(	chr2:232575101-232575353(+)$1	1	130	170	10.5176
((..(((((((((...((((...)))))))).))))).))	chr3:49755246-49755516(+)$1	1	18	58	11.0313
((((..((((((((..((...))))))))))..))))..)	chr22:50873291-50873526(+)$1	1	54	94	9.8474
((((((.((((((((.(((...))).)))))))).)))))	chr11:65325159-65325437(-)$1	1	56	96	10.0834
((((((...((((.((((.....)).)).)))))))))))	chr8:145687775-145688071(-)$1	1	28	68	11.5716
(((..((((((...(((.((...)).)))...))))))..	chr16:2029100-2029389(+)$1	1	152	192	12.6527
((.((((.(.((((.(((.....))).)))).).))))))	chr17:74381116-74381378(+)$1	1	104	144	12.4143
((((...(((..((.(.(((...))).).))..)))))))	chr12:62996807-62997118(+)$1	1	202	242	12.6252
((((((...((((((.((.....)).))))))....))).	chr20:32251179-32251458(-)$1	1	2	42	13.2573
)(((..(((.((..((((((...))))))..)).)))..)	chr1:36788412-36788683(+)$1	1	161	201	10.2096
(((((..((((((.........))))))....)))).)))	chr17:41622773-41623039(+)$1	1	6	46	8.7271
))))((((((.((((.((.....)).))))..))))))((	chr7:73021386-73021655(-)$1	1	185	225	13.5636
.(.(((((((.(....((.(...(((((..((((((..((	chr21:47565643-47565898(-)$1	1	88	128	8.5244
(((((((....(((((.........)))))..))).))))	chr19:538656-538923(+)$1	1	24	64	10.5177
(((.(((((.((((.((((....)))).).))).))))))	chr1:27320446-27320740(+)$1	1	101	141	10.3898

#PSSM
d : 0.61	e : 0.11	h : 0.05	f : 0.05	g : 0.05	c : 0.05	[ : 0.05	
d : 0.55	e : 0.16	h : 0.05	f : 0.05	g : 0.05	c : 0.05	a : 0.05	
d : 0.50	e : 0.11	[ : 0.11	h : 0.05	f : 0.05	! : 0.05	g : 0.05	c : 0.05	
d : 0.33	[ : 0.16	! : 0.11	e : 0.11	g : 0.11	c : 0.11	f : 0.05	
c : 0.16	f : 0.16	e : 0.16	! : 0.16	" : 0.11	g : 0.11	d : 0.11	
f : 0.22	c : 0.16	e : 0.16	! : 0.16	" : 0.11	g : 0.11	d : 0.05	
" : 0.22	f : 0.22	c : 0.16	e : 0.11	h : 0.05	[ : 0.05	d : 0.05	! : 0.05	g : 0.05	
f : 0.27	[ : 0.11	g : 0.11	e : 0.11	h : 0.11	" : 0.11	c : 0.11	# : 0.05	
f : 0.27	g : 0.11	e : 0.11	h : 0.11	" : 0.11	c : 0.11	b : 0.05	a : 0.05	# : 0.05	
f : 0.33	[ : 0.16	g : 0.11	d : 0.11	h : 0.11	b : 0.05	c : 0.05	# : 0.05	
f : 0.27	[ : 0.16	d : 0.16	h : 0.11	g : 0.05	! : 0.05	b : 0.05	# : 0.05	c : 0.05	
d : 0.27	f : 0.16	h : 0.11	g : 0.05	[ : 0.05	" : 0.05	! : 0.05	b : 0.05	a : 0.05	e : 0.05	c : 0.05	
d : 0.33	f : 0.16	h : 0.11	g : 0.05	" : 0.05	b : 0.05	! : 0.05	# : 0.05	e : 0.05	c : 0.05	
d : 0.22	f : 0.11	" : 0.11	h : 0.11	g : 0.05	[ : 0.05	b : 0.05	! : 0.05	r : 0.05	# : 0.05	e : 0.05	a : 0.05	
[ : 0.22	d : 0.16	f : 0.16	" : 0.05	! : 0.05	h : 0.05	b : 0.05	c : 0.05	r : 0.05	# : 0.05	e : 0.05	
[ : 0.22	b : 0.11	f : 0.11	d : 0.11	c : 0.11	" : 0.05	! : 0.05	a : 0.05	r : 0.05	# : 0.05	e : 0.05	
b : 0.44	c : 0.22	d : 0.11	r : 0.11	[ : 0.05	f : 0.05	
b : 0.38	c : 0.22	d : 0.11	r : 0.11	q : 0.05	[ : 0.05	f : 0.05	
n : 0.27	c : 0.16	d : 0.11	r : 0.11	m : 0.05	q : 0.05	l : 0.05	b : 0.05	f : 0.05	[ : 0.05	
n : 0.33	m : 0.11	l : 0.11	r : 0.11	q : 0.05	d : 0.05	b : 0.05	c : 0.05	f : 0.05	a : 0.05	
n : 0.33	l : 0.33	m : 0.11	r : 0.11	q : 0.05	" : 0.05	
n : 0.33	l : 0.27	m : 0.11	r : 0.11	q : 0.05	b : 0.05	" : 0.05	
n : 0.33	l : 0.22	b : 0.11	q : 0.05	c : 0.05	f : 0.05	" : 0.05	r : 0.05	m : 0.05	
b : 0.33	c : 0.16	d : 0.11	f : 0.11	q : 0.05	n : 0.05	h : 0.05	e : 0.05	r : 0.05	
b : 0.27	c : 0.22	d : 0.16	f : 0.11	q : 0.05	h : 0.05	e : 0.05	r : 0.05	
] : 0.33	d : 0.16	c : 0.16	f : 0.11	e : 0.11	b : 0.05	h : 0.05	
d : 0.22	f : 0.22	b : 0.11	c : 0.11	h : 0.11	] : 0.11	e : 0.11	
d : 0.22	f : 0.22	] : 0.16	h : 0.11	e : 0.11	b : 0.05	c : 0.05	a : 0.05	
d : 0.22	] : 0.16	f : 0.16	h : 0.11	g : 0.05	c : 0.05	4 : 0.05	! : 0.05	e : 0.05	a : 0.05	
d : 0.27	b : 0.11	f : 0.11	h : 0.11	g : 0.05	3 : 0.05	2 : 0.05	4 : 0.05	! : 0.05	e : 0.05	] : 0.05	
d : 0.22	f : 0.16	2 : 0.16	b : 0.11	h : 0.11	g : 0.05	3 : 0.05	4 : 0.05	c : 0.05	
2 : 0.22	] : 0.16	f : 0.16	d : 0.11	g : 0.05	h : 0.05	3 : 0.05	b : 0.05	4 : 0.05	c : 0.05	
c : 0.16	f : 0.16	] : 0.11	2 : 0.11	d : 0.11	g : 0.05	e : 0.05	h : 0.05	a : 0.05	4 : 0.05	b : 0.05	
f : 0.27	c : 0.16	] : 0.16	g : 0.11	d : 0.11	e : 0.05	h : 0.05	4 : 0.05	
f : 0.27	c : 0.22	d : 0.16	g : 0.11	e : 0.11	] : 0.05	4 : 0.05	
f : 0.27	e : 0.16	d : 0.16	] : 0.11	4 : 0.11	c : 0.11	g : 0.05	
d : 0.27	f : 0.22	e : 0.16	c : 0.11	4 : 0.05	g : 0.05	] : 0.05	! : 0.05	
d : 0.22	f : 0.22	2 : 0.11	e : 0.11	c : 0.11	4 : 0.05	] : 0.05	g : 0.05	! : 0.05	
d : 0.22	f : 0.16	2 : 0.16	e : 0.16	c : 0.16	4 : 0.05	g : 0.05	
d : 0.44	c : 0.16	e : 0.11	9 : 0.05	g : 0.05	2 : 0.05	] : 0.05	f : 0.05	

#score	197.89483595421112
#seq	18
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_transcript_m2_run1.txt

#BEAR
[ffffffuuuuuuuuuuuuffffff	chr17:8047075-8047338(-)$1	263	43	68	22.9485
::ddddwwwwwwwwwwwwwwdddd:	chr19:14627727-14628012(-)$1	285	16	41	19.5434
eeeeeyyyyyyyyyyyyyyyyeeee	chr10:121339985-121340201(-)$1	216	151	176	23.3076
ggggggxxxxxxxxxxxxxxxgggg	chr18:9182298-9182568(+)$1	270	40	65	18.4351
ffffyyyyyyyyyyyyyyyyfffff	chr12:27116124-27116396(+)$1	272	184	209	21.8690
e[fffffftttttttttttffffff	chr1:182822352-182822594(+)$1	242	17	42	21.4915
eeeeeyyyyyyyyyyyyyyyyeeee	chr12:49952969-49953234(-)$1	265	96	121	23.3076
##ddddwwwwwwwwwwwwwwdddd4	chr19:40964052-40964300(-)$1	248	35	60	22.0703
ddddccctttttttttttccc]ddd	chr17:73774987-73775217(-)$1	230	199	224	20.9955
::a[ddddtttttttttttdddd]a	chrX:153587022-153587268(-)$1	246	1	26	19.7509
:ffffffuuuuuuuuuuuuffffff	chr2:71337873-71338146(-)$1	273	74	99	22.1130
dd[eeeeettttttttttteeeee]	chr1:160323740-160324048(+)$1	308	13	38	22.6459
ddd[cccuuuuuuuuuuuuccc]dd	chr17:66042507-66042750(+)$1	243	27	52	22.9261
d!!eeeeettttttttttteeeee]	chr7:6509291-6509539(-)$1	248	219	244	22.7150
((fffffftttttttttttffffff	chr21:38877425-38877735(+)$1	310	128	153	20.2926
ggggggguuuuuuuuuuuugggggg	chr11:10824587-10824826(-)$1	239	116	141	22.8398
ddddbbwwwwwwwwwwwwwwbb]dd	chr1:109823569-109823820(-)$1	251	112	137	20.8522
eeeeeexxxxxxxxxxxxxxxeeee	chr3:9484851-9485102(+)$1	251	108	133	19.4357
hhhhhhhuuuuuuuuuuuuhhhhhh	chr11:34478061-34478357(+)$1	296	15	40	19.8901
ff"""bbvvvvvvvvvvvvvbb]ff	chr11:71158682-71158927(-)$1	245	122	147	20.6591
!!fffffftttttttttttffffff	chr5:151178644-151178918(+)$1	274	235	260	21.5879
::eeeeettttttttttteeeeedd	chr1:44441604-44441879(+)$1	275	87	112	20.3203
iiiiiiivvvvvvvvvvvvviiiii	chr5:74650164-74650430(+)$1	266	141	166	21.6714
eeeee[auuuuuuuuuuuua]eeee	chr7:150644803-150645048(-)$1	245	199	224	24.1785
ccc[ddddtttttttttttdddd22	chr19:14626897-14627149(-)$1	252	127	152	20.9928
gggggggvvvvvvvvvvvvvggggg	chr7:131081905-131082162(+)$1	257	205	230	21.9102
iiiiiiivvvvvvvvvvvvviiiii	chr3:37292727-37293038(+)$1	311	204	229	21.6714
cddddyyyyyyyyyyyyyyyydddd	chr17:7221382-7221640(-)$1	258	125	150	22.3752
eeeddddwwwwwwwwwwwwwwdddd	chr11:61069724-61069986(-)$1	262	133	158	21.8496
"ddddxxxxxxxxxxxxxxxdddd3	chr15:64010793-64011047(-)$1	254	21	46	18.5031
b[eeeeeuuuuuuuuuuuueeeee]	chr12:53865260-53865538(+)$1	278	113	138	24.1395
ffffffwwwwwwwwwwwwwwfffff	chr6:170858121-170858355(-)$1	234	124	149	21.9141
d[ddddxxxxxxxxxxxxxxxdddd	chr15:63970467-63970726(-)$1	259	58	83	18.4754
ddddddduuuuuuuuuuuudddd44	chr6:30584793-30585068(-)$1	275	10	35	22.8024
b[eeeeeuuuuuuuuuuuueeeeeb	chr1:249151656-249151903(-)$1	247	144	169	23.7557
cccdddduuuuuuuuuuuudddd]c	chr3:47456329-47456630(-)$1	301	205	230	22.9419
eeeeeyyyyyyyyyyyyyyyyeeee	chr2:32698025-32698317(+)$1	292	161	186	23.3076
:ffffffuuuuuuuuuuuuffffff	chr8:37720511-37720798(-)$1	287	147	172	22.1130
eeeeexxxxxxxxxxxxxxxeeeee	chr7:138963905-138964154(+)$1	249	8	33	19.4307
!!eeeeevvvvvvvvvvvvveeeee	chr10:51581157-51581429(+)$1	272	184	209	23.2777
#eeeeevvvvvvvvvvvvveeeee]	chr4:2254136-2254410(-)$1	274	90	115	23.0430
ff[dddduuuuuuuuuuuuddddff	chr1:100177517-100177849(-)$1	332	225	250	23.0182
fffa[bbvvvvvvvvvvvvvbb]a]	chr17:80041688-80041918(-)$1	230	129	154	20.8879
fdddd[bbtttttttttttbbdddd	chr3:9516653-9516889(+)$1	236	145	170	20.9042
ffffffvvvvvvvvvvvvvffffff	chr1:206810846-206811136(+)$1	290	228	253	21.6526
FFeeeeeuuuuuuuuuuuueeeee:	chr19:54647256-54647496(+)$1	240	195	220	22.5261
ee[eeeeettttttttttteeeee]	chr22:21345805-21346012(+)$1	207	139	164	22.7814
ddd[ddddtttttttttttdddd]d	chr1:47691456-47691727(-)$1	271	240	265	21.3926
dd[dddduuuuuuuuuuuudddd]d	chr7:73932290-73932569(+)$1	279	156	181	22.9711
::fffffftttttttttttffffff	chr17:1579211-1579491(-)$1	280	216	241	19.7987
f:fffffftttttttttttffffff	chr11:46397462-46397713(+)$1	251	74	99	20.4902
::eeeeeuuuuuuuuuuuueeeeeF	chr7:44713195-44713480(+)$1	285	222	247	22.1734
[ffffffuuuuuuuuuuuuffffff	chr22:50192673-50192933(-)$1	260	158	183	22.9485
eeeeeyyyyyyyyyyyyyyyyeeee	chrX:154018235-154018437(-)$1	202	152	177	23.3076
##eeeeeuuuuuuuuuuuueeeee2	chr22:19386609-19386864(-)$1	255	83	108	23.9580
[eeeeevvvvvvvvvvvvveeeee]	chr7:100483139-100483381(+)$1	242	123	148	23.0888
[ffffffuuuuuuuuuuuuffffff	chr7:100465535-100465841(+)$1	306	265	290	22.9485
cc[cccwwwwwwwwwwwwwwccc]c	chr19:46180079-46180302(+)$1	223	61	86	21.8975
eeeeexxxxxxxxxxxxxxxeeeee	chr7:2418635-2418864(+)$1	229	107	132	19.4307
eeeeeyyyyyyyyyyyyyyyyeeee	chr4:151773972-151774241(-)$1	269	124	149	23.3076
##eeeeevvvvvvvvvvvvveeeee	chrX:131157376-131157648(+)$1	272	90	115	23.0953
bb"""ccctttttttttttccc22b	chr19:39440871-39441140(-)$1	269	119	144	20.0673
eddddyyyyyyyyyyyyyyyydddd	chr14:73763894-73764168(-)$1	274	114	139	22.3976
dddd[ccctttttttttttcccddd	chr1:226054772-226055009(-)$1	237	11	36	21.6626

#otherMatches

#Seq PSSM
CUUGGCCUGUCCUCUCCCUGGUCAG	chr17:8047075-8047338(-)$1	263	43	68	22.9485
UUGGGGUUCUUCCUUGCUCUCCCCU	chr19:14627727-14628012(-)$1	285	16	41	19.5434
CUGCCCAAACUCCAAAAUGAUGGUA	chr10:121339985-121340201(-)$1	216	151	176	23.3076
UAUAUAUAUUCAAAUAACCCUUAUA	chr18:9182298-9182568(+)$1	270	40	65	18.4351
UGGCAGCAGUAAUGAGGAAAGCCAU	chr12:27116124-27116396(+)$1	272	184	209	21.8690
AUAAUUCUUUAAUGUAUUUAGGAUU	chr1:182822352-182822594(+)$1	242	17	42	21.4915
GACCUACUCCCCCAAUUCUUCAGGU	chr12:49952969-49953234(-)$1	265	96	121	23.3076
ACGGCCCUCCCCUACACCUCGgccc	chr19:40964052-40964300(-)$1	248	35	60	22.0703
UUCGUCGUUAUCAGAAGUCGACCGA	chr17:73774987-73775217(-)$1	230	199	224	20.9955
GAGGACCAGAGUGCAGAGGUGGUGC	chrX:153587022-153587268(-)$1	246	1	26	19.7509
AACUAGUGAUUUUAAUUAAACUAGU	chr2:71337873-71338146(-)$1	273	74	99	22.1130
UUGGUCCCAAAAGGCUUGAGGGAUA	chr1:160323740-160324048(+)$1	308	13	38	22.6459
CCUAGAGAUUAAAUACAGACUUCAG	chr17:66042507-66042750(+)$1	243	27	52	22.9261
CGAUGGAAAUCAUGAUACCUUCCGA	chr7:6509291-6509539(-)$1	248	219	244	22.7150
UUAGAGAAAGCCUUUCAUCUUCUCU	chr21:38877425-38877735(+)$1	310	128	153	20.2926
AGGaauauuaaaauaaaauuauuuu	chr11:10824587-10824826(-)$1	239	116	141	22.8398
GUGGGAUUGACCCUGAAAUUUCUCC	chr1:109823569-109823820(-)$1	251	112	137	20.8522
UGAAAAAUCCAACCAGAAGCCUUUU	chr3:9484851-9485102(+)$1	251	108	133	19.4357
UAAAUUCUUAUGUUUUAUUGGAUUU	chr11:34478061-34478357(+)$1	296	15	40	19.8901
UUAUUCAUUUUUGUGUUCCUUGCAG	chr11:71158682-71158927(-)$1	245	122	147	20.6591
GUCCUAAUAAAACUUGUACAUUAGG	chr5:151178644-151178918(+)$1	274	235	260	21.5879
GAGGGGUUAAGAUUUUGUGCUCCGC	chr1:44441604-44441879(+)$1	275	87	112	20.3203
UUUUUUUUCUCCAUUUCUUUAGAAA	chr5:74650164-74650430(+)$1	266	141	166	21.6714
GCCCUGAGAGCAGUGAGGAUGAGGG	chr7:150644803-150645048(-)$1	245	199	224	24.1785
GAGCCAGCUUCCAUCUAAUGCUGUC	chr19:14626897-14627149(-)$1	252	127	152	20.9928
ACCUUGUCUCAACUGGUAUAGCAAG	chr7:131081905-131082162(+)$1	257	205	230	21.9102
CUUCAUUUACAGAGCAACUUGAUGA	chr3:37292727-37293038(+)$1	311	204	229	21.6714
ACCUGUGCCCCUCUGCUCCCUCAGG	chr17:7221382-7221640(-)$1	258	125	150	22.3752
ACUGCCUCCUUCACUUCUUCAGGGC	chr11:61069724-61069986(-)$1	262	133	158	21.8496
UCUGAAACACACAAAUUUACUUAGU	chr15:64010793-64011047(-)$1	254	21	46	18.5031
GCCAUGCAACUCUAAUUCGGUGUGC	chr12:53865260-53865538(+)$1	278	113	138	24.1395
GGAGAAUUAAUUUUUUUCUUUUUUC	chr6:170858121-170858355(-)$1	234	124	149	21.9141
GACCCAAAUACUAGUUCAACAUGGG	chr15:63970467-63970726(-)$1	259	58	83	18.4754
UCCGGGUAUAAAAGACUCCACCCGA	chr6:30584793-30585068(-)$1	275	10	35	22.8024
GCUCUCCAGGGUAAGAGGAGGAGAC	chr1:249151656-249151903(-)$1	247	144	169	23.7557
GGCCUGUCACCUGACCCACACAGUG	chr3:47456329-47456630(-)$1	301	205	230	22.9419
GUGGAGUUUUAUUAACAAUAAUCUA	chr2:32698025-32698317(+)$1	292	161	186	23.3076
CUAUUUCCCCCCCUCCAAAGAAAUA	chr8:37720511-37720798(-)$1	287	147	172	22.1130
CGUAUAAACUGAGCACUUAAAUACG	chr7:138963905-138964154(+)$1	249	8	33	19.4307
CCAGACCAUCACCACAUUUGGGUCU	chr10:51581157-51581429(+)$1	272	184	209	23.2777
UGCAGGGCCCUGGAAACUGCCUGCU	chr4:2254136-2254410(-)$1	274	90	115	23.0430
GCUAGCUGCUUAUAUUACAAGUUGU	chr1:100177517-100177849(-)$1	332	225	250	23.0182
CCGCGCUUCCUCUCUUCACCAGGGU	chr17:80041688-80041918(-)$1	230	129	154	20.8879
AAAGGAGCAACAGUUUACAGCCCUU	chr3:9516653-9516889(+)$1	236	145	170	20.9042
CUUCUGAACCACCUCCACCCAGAAG	chr1:206810846-206811136(+)$1	290	228	253	21.6526
GCAGCUUAUAGACAACCGCAAGCUC	chr19:54647256-54647496(+)$1	240	195	220	22.5261
CUCCGGGGCUCCCCACCACCCCCGC	chr22:21345805-21346012(+)$1	207	139	164	22.7814
GCAUGGCCCCCCCGCACCUGGUCCU	chr1:47691456-47691727(-)$1	271	240	265	21.3926
UCUCCUGGACUCUCCCCUACAGGCG	chr7:73932290-73932569(+)$1	279	156	181	22.9711
GAGGCGCUGUCCCGCAUCAAGCGUC	chr17:1579211-1579491(-)$1	280	216	241	19.7987
GAGGGGCUGAAGCAGCCGGGGCCCC	chr11:46397462-46397713(+)$1	251	74	99	20.4902
CAUGUUCAUCAAUGACCUGGAGCAG	chr7:44713195-44713480(+)$1	285	222	247	22.1734
GUUCUCAGAGAGAAAAUGAUGAGGA	chr22:50192673-50192933(-)$1	260	158	183	22.9485
GGAAUGAUCUCAUUAAAAGUAAUUC	chrX:154018235-154018437(-)$1	202	152	177	23.3076
UGAUAGCUAUUACCUUGCUGCUAUG	chr22:19386609-19386864(-)$1	255	83	108	23.9580
GGAGGAAGAAGCGAAUGAAUCCUUG	chr7:100483139-100483381(+)$1	242	123	148	23.0888
GCUGGCCGAGCUGAAUGGGGGUCGG	chr7:100465535-100465841(+)$1	306	265	290	22.9485
CUGGGGGAGACUGGGAGACACCCGG	chr19:46180079-46180302(+)$1	223	61	86	21.8975
UGUGCUUUCCCCAACCUCAUGCAUA	chr7:2418635-2418864(+)$1	229	107	132	19.4307
UGAUUGUACAUUUUUCACCUAGGUC	chr4:151773972-151774241(-)$1	269	124	149	23.3076
ACAGCCCACCUCCUAGCCCCGGGCU	chrX:131157376-131157648(+)$1	272	90	115	23.0953
GGCCUGGCUGCGCUGACCCGCCUAC	chr19:39440871-39441140(-)$1	269	119	144	20.0673
GACAUUUUUUUAAUAUUAUAUAUGU	chr14:73763894-73764168(-)$1	274	114	139	22.3976
CCAGUCAGACGUUGUCUUCCUGCUG	chr1:226054772-226055009(-)$1	237	11	36	21.6626

#DB
.((((((............))))))	chr17:8047075-8047338(-)$1	1	43	68	22.9485
..((((..............)))).	chr19:14627727-14628012(-)$1	1	16	41	19.5434
(((((................))))	chr10:121339985-121340201(-)$1	1	151	176	23.3076
((((((...............))))	chr18:9182298-9182568(+)$1	1	40	65	18.4351
((((................)))))	chr12:27116124-27116396(+)$1	1	184	209	21.8690
(.((((((...........))))))	chr1:182822352-182822594(+)$1	1	17	42	21.4915
(((((................))))	chr12:49952969-49953234(-)$1	1	96	121	23.3076
..((((..............)))).	chr19:40964052-40964300(-)$1	1	35	60	22.0703
(((((((...........))).)))	chr17:73774987-73775217(-)$1	1	199	224	20.9955
..(.((((...........)))).)	chrX:153587022-153587268(-)$1	1	1	26	19.7509
.((((((............))))))	chr2:71337873-71338146(-)$1	1	74	99	22.1130
((.(((((...........))))).	chr1:160323740-160324048(+)$1	1	13	38	22.6459
(((.(((............))).))	chr17:66042507-66042750(+)$1	1	27	52	22.9261
(..(((((...........))))).	chr7:6509291-6509539(-)$1	1	219	244	22.7150
..((((((...........))))))	chr21:38877425-38877735(+)$1	1	128	153	20.2926
(((((((............))))))	chr11:10824587-10824826(-)$1	1	116	141	22.8398
((((((..............)).))	chr1:109823569-109823820(-)$1	1	112	137	20.8522
)(((((...............))))	chr3:9484851-9485102(+)$1	1	108	133	19.4357
(((((((............))))))	chr11:34478061-34478357(+)$1	1	15	40	19.8901
((...((.............)).))	chr11:71158682-71158927(-)$1	1	122	147	20.6591
..((((((...........))))))	chr5:151178644-151178918(+)$1	1	235	260	21.5879
..(((((...........)))))((	chr1:44441604-44441879(+)$1	1	87	112	20.3203
(((((((.............)))))	chr5:74650164-74650430(+)$1	1	141	166	21.6714
(((((.(............).))))	chr7:150644803-150645048(-)$1	1	199	224	24.1785
(((.((((...........))))..	chr19:14626897-14627149(-)$1	1	127	152	20.9928
(((((((.............)))))	chr7:131081905-131082162(+)$1	1	205	230	21.9102
(((((((.............)))))	chr3:37292727-37293038(+)$1	1	204	229	21.6714
(((((................))))	chr17:7221382-7221640(-)$1	1	125	150	22.3752
(((((((..............))))	chr11:61069724-61069986(-)$1	1	133	158	21.8496
.((((...............)))).	chr15:64010793-64011047(-)$1	1	21	46	18.5031
(.(((((............))))).	chr12:53865260-53865538(+)$1	1	113	138	24.1395
((((((..............)))))	chr6:170858121-170858355(-)$1	1	124	149	21.9141
(.((((...............))))	chr15:63970467-63970726(-)$1	1	58	83	18.4754
(((((((............))))..	chr6:30584793-30585068(-)$1	1	10	35	22.8024
(.(((((............))))))	chr1:249151656-249151903(-)$1	1	144	169	23.7557
(((((((............)))).)	chr3:47456329-47456630(-)$1	1	205	230	22.9419
(((((................))))	chr2:32698025-32698317(+)$1	1	161	186	23.3076
.((((((............))))))	chr8:37720511-37720798(-)$1	1	147	172	22.1130
(((((...............)))))	chr7:138963905-138964154(+)$1	1	8	33	19.4307
..(((((.............)))))	chr10:51581157-51581429(+)$1	1	184	209	23.2777
.(((((.............))))).	chr4:2254136-2254410(-)$1	1	90	115	23.0430
((.((((............))))))	chr1:100177517-100177849(-)$1	1	225	250	23.0182
((((.((.............)).).	chr17:80041688-80041918(-)$1	1	129	154	20.8879
)((((.((...........))))))	chr3:9516653-9516889(+)$1	1	145	170	20.9042
((((((.............))))))	chr1:206810846-206811136(+)$1	1	228	253	21.6526
))(((((............))))).	chr19:54647256-54647496(+)$1	1	195	220	22.5261
((.(((((...........))))).	chr22:21345805-21346012(+)$1	1	139	164	22.7814
(((.((((...........)))).)	chr1:47691456-47691727(-)$1	1	240	265	21.3926
((.((((............)))).)	chr7:73932290-73932569(+)$1	1	156	181	22.9711
..((((((...........))))))	chr17:1579211-1579491(-)$1	1	216	241	19.7987
).((((((...........))))))	chr11:46397462-46397713(+)$1	1	74	99	20.4902
..(((((............))))))	chr7:44713195-44713480(+)$1	1	222	247	22.1734
.((((((............))))))	chr22:50192673-50192933(-)$1	1	158	183	22.9485
(((((................))))	chrX:154018235-154018437(-)$1	1	152	177	23.3076
..(((((............))))).	chr22:19386609-19386864(-)$1	1	83	108	23.9580
.(((((.............))))).	chr7:100483139-100483381(+)$1	1	123	148	23.0888
.((((((............))))))	chr7:100465535-100465841(+)$1	1	265	290	22.9485
((.(((..............))).)	chr19:46180079-46180302(+)$1	1	61	86	21.8975
(((((...............)))))	chr7:2418635-2418864(+)$1	1	107	132	19.4307
(((((................))))	chr4:151773972-151774241(-)$1	1	124	149	23.3076
..(((((.............)))))	chrX:131157376-131157648(+)$1	1	90	115	23.0953
((...(((...........)))..)	chr19:39440871-39441140(-)$1	1	119	144	20.0673
(((((................))))	chr14:73763894-73764168(-)$1	1	114	139	22.3976
((((.(((...........))))))	chr1:226054772-226055009(-)$1	1	11	36	21.6626

#PSSM
e : 0.20	d : 0.15	f : 0.12	: : 0.10	[ : 0.06	# : 0.06	c : 0.06	g : 0.04	b : 0.04	! : 0.03	i : 0.03	( : 0.01	h : 0.01	" : 0.01	F : 0.01	
e : 0.20	d : 0.18	f : 0.17	: : 0.09	[ : 0.06	g : 0.04	# : 0.04	! : 0.04	c : 0.04	i : 0.03	( : 0.01	h : 0.01	F : 0.01	b : 0.01	
e : 0.31	f : 0.21	d : 0.20	[ : 0.07	g : 0.04	" : 0.03	i : 0.03	c : 0.03	a : 0.01	! : 0.01	h : 0.01	
e : 0.34	d : 0.23	f : 0.20	[ : 0.06	g : 0.04	" : 0.03	i : 0.03	h : 0.01	a : 0.01	c : 0.01	
e : 0.34	d : 0.23	f : 0.18	g : 0.04	c : 0.04	" : 0.03	i : 0.03	[ : 0.03	y : 0.01	b : 0.01	h : 0.01	
e : 0.21	f : 0.18	d : 0.17	y : 0.12	c : 0.07	g : 0.04	b : 0.04	x : 0.04	i : 0.03	[ : 0.03	h : 0.01	
e : 0.17	f : 0.15	y : 0.12	d : 0.12	x : 0.09	w : 0.07	c : 0.06	b : 0.04	v : 0.04	g : 0.03	i : 0.03	h : 0.01	a : 0.01	
u : 0.28	v : 0.15	y : 0.12	w : 0.09	x : 0.09	f : 0.07	d : 0.04	e : 0.04	t : 0.03	c : 0.03	b : 0.01	
u : 0.28	t : 0.25	v : 0.15	y : 0.12	w : 0.09	x : 0.09	
u : 0.28	t : 0.25	v : 0.15	y : 0.12	w : 0.09	x : 0.09	
u : 0.28	t : 0.25	v : 0.15	y : 0.12	w : 0.09	x : 0.09	
u : 0.28	t : 0.25	v : 0.15	y : 0.12	w : 0.09	x : 0.09	
u : 0.28	t : 0.25	v : 0.15	y : 0.12	w : 0.09	x : 0.09	
u : 0.28	t : 0.25	v : 0.15	y : 0.12	w : 0.09	x : 0.09	
u : 0.28	t : 0.25	v : 0.15	y : 0.12	w : 0.09	x : 0.09	
u : 0.28	t : 0.25	v : 0.15	y : 0.12	w : 0.09	x : 0.09	
u : 0.28	t : 0.25	v : 0.15	y : 0.12	w : 0.09	x : 0.09	
u : 0.28	t : 0.25	v : 0.15	y : 0.12	w : 0.09	x : 0.09	
u : 0.28	t : 0.21	v : 0.15	y : 0.12	w : 0.09	x : 0.09	c : 0.01	e : 0.01	
f : 0.17	e : 0.17	y : 0.12	d : 0.10	v : 0.10	w : 0.09	x : 0.09	c : 0.06	g : 0.01	h : 0.01	a : 0.01	b : 0.01	
e : 0.23	f : 0.20	d : 0.15	y : 0.10	c : 0.07	b : 0.06	x : 0.04	g : 0.03	i : 0.03	h : 0.01	] : 0.01	w : 0.01	
e : 0.34	d : 0.23	f : 0.20	c : 0.06	g : 0.04	b : 0.04	i : 0.03	] : 0.01	h : 0.01	
e : 0.34	d : 0.26	f : 0.20	] : 0.06	g : 0.04	i : 0.03	h : 0.01	c : 0.01	2 : 0.01	
e : 0.32	f : 0.23	d : 0.20	] : 0.07	g : 0.04	i : 0.03	2 : 0.03	h : 0.01	4 : 0.01	a : 0.01	
f : 0.23	d : 0.18	e : 0.17	] : 0.10	g : 0.04	: : 0.03	4 : 0.03	i : 0.03	2 : 0.03	b : 0.03	c : 0.03	a : 0.01	h : 0.01	3 : 0.01	F : 0.01	

#score	1395.0603213783531
#seq	64
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_CDS_m1_run1.txt

#BEAR
ddeeeeevvvvvvvvvvvvveeeee]	chr4:57237623-57237912(-)$1	289	198	224	23.7649
ggggggguuuuuuuuuuuuggggggg	chr17:76167718-76167961(+)$1	243	78	104	24.2138
ffff[bbuuuuuuuuuuuubb22fff	chr7:107545793-107546048(+)$1	255	91	117	22.6692
c[eeeeevvvvvvvvvvvvveeeee]	chr16:88870163-88870366(+)$1	203	86	112	24.2702
==[dddduuuuuuuuuuuudddd]==	chr19:39334601-39334837(-)$1	236	201	227	24.9780
hhhhhhhuuuuuuuuuuuuhhhhhhh	chr19:42753971-42754194(-)$1	223	16	42	21.6086
bb!!ddddtttttttttttdddd22b	chr17:7150066-7150280(-)$1	214	42	68	22.3086
::eeeeevvvvvvvvvvvvveeeee:	chr11:72469535-72469747(-)$1	212	154	180	21.3774
$$$$$bbtttttttttttbb4444gg	chr1:39908431-39908680(+)$1	249	179	205	21.3293
gggg[bbvvvvvvvvvvvvvbb]ggg	chr12:6623367-6623609(+)$1	242	91	117	23.4796
:ccccccuuuuuuuuuuuuccc]ccc	chr6:17764790-17765083(-)$1	293	207	233	23.6030
========ttttttttttt=======	chr19:58904295-58904499(+)$1	204	141	167	22.7183
:eeeeevvvvvvvvvvvvveeeeeFF	chr1:182353722-182353940(-)$1	218	116	142	22.2342
ggggggguuuuuuuuuuuuggggggg	chr11:57449814-57450046(+)$1	232	125	151	24.2138
eee[cccuuuuuuuuuuuuccc22ee	chr11:763646-763867(+)$1	221	117	143	24.5229
="""bbvvvvvvvvvvvvvbb4444=	chr21:30441662-30441915(-)$1	253	42	68	23.4636
d[a[ccctttttttttttccc]a]dd	chr1:32798210-32798446(+)$1	236	81	107	22.9568
$ddddccctttttttttttccc]ddd	chr17:7834723-7834964(-)$1	241	113	139	22.3967
fffff[bbtttttttttttbb]ffff	chr11:320555-320777(-)$1	222	59	85	21.0049
==[dddduuuuuuuuuuuudddd]==	chr19:39334563-39334790(-)$1	227	154	180	24.9780
ff[ddddvvvvvvvvvvvvvddddff	chr2:55460398-55460611(+)$1	213	23	49	23.6869
[a[dddduuuuuuuuuuuudddd]ad	chr15:30011129-30011386(-)$1	257	152	178	24.7673
&&eeeeeuuuuuuuuuuuueeeee88	chr16:46712923-46713170(-)$1	247	41	67	22.7482
cc!!cccuuuuuuuuuuuuccc333c	chr1:167904947-167905164(-)$1	217	32	58	25.4643
b[eeeeettttttttttteeeee]bb	chr19:39924064-39924266(-)$1	202	67	93	22.5947
ee[cccawwwwwwwwwwwwwwa]ccc	chr17:80014064-80014313(+)$1	249	163	189	23.1247
bb[ddddtttttttttttdddd22bb	chr17:4851514-4851745(-)$1	231	121	147	22.0685
eee[cccvvvvvvvvvvvvvccc]ee	chr16:2213898-2214102(+)$1	204	139	165	24.2470
e[eeeeeuuuuuuuuuuuueeeeeee	chr2:176794589-176794805(-)$1	216	136	162	24.3287
[ffffffuuuuuuuuuuuuffffffc	chr1:149858749-149858962(+)$1	213	65	91	23.1344
ff[dddduuuuuuuuuuuuddddfff	chr2:101619063-101619290(+)$1	227	122	148	24.0445
""eeeeewwwwwwwwwwwwwweeeee	chr2:220115765-220115990(-)$1	225	65	91	23.3489
iii[cccuuuuuuuuuuuuccc]iii	chr1:54509075-54509299(-)$1	224	68	94	24.9289
e!!dddduuuuuuuuuuuudddd22e	chr5:33456153-33456366(+)$1	213	168	194	24.5403
%eeeeevvvvvvvvvvvvveeeee66	chr11:120343682-120343922(+)$1	240	173	199	22.7532
gg[cccwwwwwwwwwwwwwwccc]gg	chr13:98641231-98641453(+)$1	222	42	68	24.0516
ee!!cccuuuuuuuuuuuuccc22ee	chr18:77737508-77737736(-)$1	228	137	163	24.7046
[acccxxxxxxxxxxxxxxxccc]a]	chr6:31807285-31807490(+)$1	205	43	69	18.8074
gggg[bbwwwwwwwwwwwwwwbb]gg	chr1:17354231-17354460(-)$1	229	102	128	22.5311
c[eeeeeuuuuuuuuuuuueeeee33	chr9:124115458-124115673(-)$1	215	87	113	24.8280
ddd!!bbuuuuuuuuuuuubb22ddd	chr11:62291135-62291359(-)$1	224	106	132	22.4379
cc[cccuuuuuuuuuuuuccc]cccd	chr14:102467845-102468055(+)$1	210	35	61	22.4757
gggg[bbvvvvvvvvvvvvvbb333g	chr1:54675547-54675766(+)$1	219	103	129	23.9643
####cccuuuuuuuuuuuuccc22dd	chr17:37008789-37008991(-)$1	202	91	117	24.6873
c[eeeeeuuuuuuuuuuuueeeeecc	chr5:176764265-176764502(-)$1	237	19	45	24.5107
!!cccxxxxxxxxxxxxxxxccc22f	chr19:2129230-2129503(-)$1	273	90	116	18.7387
[ddddwwwwwwwwwwwwwwdddd]ee	chr9:123632098-123632309(-)$1	211	99	125	22.8978
ggggggvvvvvvvvvvvvvggggggg	chr19:34957785-34958016(+)$1	231	77	103	23.8511
#dddd[auuuuuuuuuuuua]dddda	chr19:5896827-5897085(-)$1	258	54	80	23.6553
hh[bbccctttttttttttccc]bb]	chr1:24745927-24746179(+)$1	252	92	118	21.6888
[eeeeevvvvvvvvvvvvveeeee33	chr6:13307857-13308078(-)$1	221	86	112	24.3259
ggggggguuuuuuuuuuuuggggggg	chr1:115282266-115282517(-)$1	251	87	113	24.2138
""eeeeeuuuuuuuuuuuueeeee22	chr18:34378387-34378594(-)$1	207	143	169	24.4402
:ffffffuuuuuuuuuuuuffffff:	chr20:34143777-34143993(+)$1	216	72	98	21.2604
$$$dddduuuuuuuuuuuudddd555	chr6:157527803-157528047(+)$1	244	84	110	21.9008
cceeeeettttttttttteeeee22c	chr6:26199681-26199891(+)$1	210	92	118	22.8907
&&&&cccuuuuuuuuuuuuccc333e	chr1:1747193-1747400(-)$1	207	126	152	22.9995
fffdddduuuuuuuuuuuudddd333	chr3:128344651-128344888(-)$1	237	13	39	24.5391
gggggggwwwwwwwwwwwwwwggggg	chr11:64785821-64786047(+)$1	226	59	85	23.1253
!bbdddduuuuuuuuuuuudddd]bb	chr5:115249033-115249295(+)$1	262	88	114	23.6324

#otherMatches

#Seq PSSM
GUGGUGCCUCUCUGCUUAUUGUACCA	chr4:57237623-57237912(-)$1	289	198	224	23.7649
ACCCUGCUGUGCUCCCCCUGCAGGGU	chr17:76167718-76167961(+)$1	243	78	104	24.2138
UUAUUGAUACAAAGAACAUUCUUAUA	chr7:107545793-107546048(+)$1	255	91	117	22.6692
GCCGCGUCACCGACUUCUUcgcgcgc	chr16:88870163-88870366(+)$1	203	86	112	24.2702
AGGUGACUGACUGCCCCUUGUCAGCU	chr19:39334601-39334837(-)$1	236	201	227	24.9780
CACACCUAAGUGCGUGUUAAGGUGUG	chr19:42753971-42754194(-)$1	223	16	42	21.6086
UCUAGGCCUGGGUUGUGGUGGUCAUG	chr17:7150066-7150280(-)$1	214	42	68	22.3086
CUACUCAGUCAAACAUCCCGUGAGUC	chr11:72469535-72469747(-)$1	212	154	180	21.3774
AAGAGCUAUACAGAUAACAGAAAGCC	chr1:39908431-39908680(+)$1	249	179	205	21.3293
CUGGAGAAUCCCACCAUUAAUCACCA	chr12:6623367-6623609(+)$1	242	91	117	23.4796
AGGAUGCAGACUCCACCGAGCACUCC	chr6:17764790-17765083(-)$1	293	207	233	23.6030
UUGUGGAGCGCCUCACUAACUCCAUG	chr19:58904295-58904499(+)$1	204	141	167	22.7183
CGGCACCAGUACCACAUCCGUGCCUA	chr1:182353722-182353940(-)$1	218	116	142	22.2342
AAUGCAAUUAUGUUUCUCUUUGUGUU	chr11:57449814-57450046(+)$1	232	125	151	24.2138
AAAAUCUACAACUACUACAAGAAGUU	chr11:763646-763867(+)$1	221	117	143	24.5229
AUUUGAUUAAUAAUGGCUUUCUUUUU	chr21:30441662-30441915(-)$1	253	42	68	23.4636
UGUGUUCUAGAAGUCACCGAAGAGGA	chr1:32798210-32798446(+)$1	236	81	107	22.9568
UUGUCAGCAAGAUGUCCCCGCUAGAC	chr17:7834723-7834964(-)$1	241	113	139	22.3967
GGGGGCGCCCCACAACCCUGCUCCCC	chr11:320555-320777(-)$1	222	59	85	21.0049
AGGUGACUGACUGCCCCUUGUCAGCU	chr19:39334563-39334790(-)$1	227	154	180	24.9780
GGUAAUUGUCAAACUAAAUGAGUUCU	chr2:55460398-55460611(+)$1	213	23	49	23.6869
ACCUAUGAACCCCAACUCCCAUACGU	chr15:30011129-30011386(-)$1	257	152	178	24.7673
GAAGGAUAGUAGUAAGUUGGUCCUGU	chr16:46712923-46713170(-)$1	247	41	67	22.7482
GGACGAGAACACAGCCACGCUCCCAC	chr1:167904947-167905164(-)$1	217	32	58	25.4643
GUCCAUCUCCAAAGCCCUGGUGGCCU	chr19:39924064-39924266(-)$1	202	67	93	22.5947
CAAGUACGCCUCAUGUCUCAAGAUGC	chr17:80014064-80014313(+)$1	249	163	189	23.1247
CGUGGGCUACAAGGACUCGCCCUCCG	chr17:4851514-4851745(-)$1	231	121	147	22.0685
AGGACCCCCAGCAUGCCCCAGGGAUC	chr16:2213898-2214102(+)$1	204	139	165	24.2470
GGAUAUUUAUAGUCUUACUGAUGUCA	chr2:176794589-176794805(-)$1	216	136	162	24.3287
GCUGGGCAAAGUCACCAUCGCCCAGG	chr1:149858749-149858962(+)$1	213	65	91	23.1344
GCGAGAAGAAAAAGGGCCGUUCUGCC	chr2:101619063-101619290(+)$1	227	122	148	24.0445
AAGCUGGAAUUCUCCAUCUACCCAGC	chr2:220115765-220115990(-)$1	225	65	91	23.3489
uaauauauuucucauuauuuauuuua	chr1:54509075-54509299(-)$1	224	68	94	24.9289
AAAUACACAAAGUAAGUAAUGUAACU	chr5:33456153-33456366(+)$1	213	168	194	24.5403
uaauuuaaaaaauaaaauaaaauuuG	chr11:120343682-120343922(+)$1	240	173	199	22.7532
UCUGACUUACACAACUUUAUGUCUGG	chr13:98641231-98641453(+)$1	222	42	68	24.0516
AGGUACGUUAUCUUAAAGUUGUUACU	chr18:77737508-77737736(-)$1	228	137	163	24.7046
GACACAAUAUCUUCCGCCUGGUGCUG	chr6:31807285-31807490(+)$1	205	43	69	18.8074
UUUGAGCAACUUCUAUGCACAGUACA	chr1:17354231-17354460(-)$1	229	102	128	22.5311
UUGCAGGUUUGUUUUUUAUUCUGCCA	chr9:124115458-124115673(-)$1	215	87	113	24.8280
CCUGACAUUGACUUAAACUUGAAAGG	chr11:62291135-62291359(-)$1	224	106	132	22.4379
GUGUGGAAUACUUAUGAACUAGACUU	chr14:102467845-102468055(+)$1	210	35	61	22.4757
GGAGCCCGACUGAGCACUAAGGAUCC	chr1:54675547-54675766(+)$1	219	103	129	23.9643
GAUGGCCACAGUCAAGAAAGGCAAAC	chr17:37008789-37008991(-)$1	202	91	117	24.6873
CUGUCCUACGACCACAGCAAGGAUGG	chr5:176764265-176764502(-)$1	237	19	45	24.5107
ACGCAACCCUAAGAACUACCUGUCCC	chr19:2129230-2129503(-)$1	273	90	116	18.7387
GUGCCACAUCCCCAUAGCGGGCAGUG	chr9:123632098-123632309(-)$1	211	99	125	22.8978
CUGCCAAAAGCAUAACCAAUGGCAGU	chr19:34957785-34958016(+)$1	231	77	103	23.8511
AGCCUCCCUCCUCUGUCUCGCAGGCC	chr19:5896827-5897085(-)$1	258	54	80	23.6553
AUGCGCCACUAGACCACCAUGGACGG	chr1:24745927-24746179(+)$1	252	92	118	21.6888
UUGCUUAAUCUUUAGCCAAAAGCGUU	chr6:13307857-13308078(-)$1	221	86	112	24.3259
GGGGUUAUUGAAAAACUGUUAACCUC	chr1:115282266-115282517(-)$1	251	87	113	24.2138
AUAUGCCUUCACCAGCUAUGGCAUUA	chr18:34378387-34378594(-)$1	207	143	169	24.4402
AUCCAGGCAUUGUGAACCCCCUGGAC	chr20:34143777-34143993(+)$1	216	72	98	21.2604
AAGCAUCAUAGCAACCAUCGAUGACG	chr6:157527803-157528047(+)$1	244	84	110	21.9008
GUGUUUAUUUAUCAUGCCUGAACCUG	chr6:26199681-26199891(+)$1	210	92	118	22.8907
AGAAUCCAAAUGCGCACGAGGAGGAC	chr1:1747193-1747400(-)$1	207	126	152	22.9995
UUAUUCCCAUCUUCUUCCAGGAACAU	chr3:128344651-128344888(-)$1	237	13	39	24.5391
UGGGGAGGACAUCGACACCAUCUCCC	chr11:64785821-64786047(+)$1	226	59	85	23.1253
AUCCCAAGAAAUAUUAACAUUGGUGA	chr5:115249033-115249295(+)$1	262	88	114	23.6324

#DB
(((((((.............))))).	chr4:57237623-57237912(-)$1	1	198	224	23.7649
(((((((............)))))))	chr17:76167718-76167961(+)$1	1	78	104	24.2138
((((.((............))..)))	chr7:107545793-107546048(+)$1	1	91	117	22.6692
(.(((((.............))))).	chr16:88870163-88870366(+)$1	1	86	112	24.2702
((.((((............)))).))	chr19:39334601-39334837(-)$1	1	201	227	24.9780
(((((((............)))))))	chr19:42753971-42754194(-)$1	1	16	42	21.6086
((..((((...........))))..)	chr17:7150066-7150280(-)$1	1	42	68	22.3086
..(((((.............))))).	chr11:72469535-72469747(-)$1	1	154	180	21.3774
.....((...........))....))	chr1:39908431-39908680(+)$1	1	179	205	21.3293
((((.((.............)).)))	chr12:6623367-6623609(+)$1	1	91	117	23.4796
.((((((............))).)))	chr6:17764790-17765083(-)$1	1	207	233	23.6030
((((((((...........)))))))	chr19:58904295-58904499(+)$1	1	141	167	22.7183
.(((((.............)))))))	chr1:182353722-182353940(-)$1	1	116	142	22.2342
(((((((............)))))))	chr11:57449814-57450046(+)$1	1	125	151	24.2138
(((.(((............)))..))	chr11:763646-763867(+)$1	1	117	143	24.5229
(...((.............))....)	chr21:30441662-30441915(-)$1	1	42	68	23.4636
(.(.(((...........))).).))	chr1:32798210-32798446(+)$1	1	81	107	22.9568
.(((((((...........))).)))	chr17:7834723-7834964(-)$1	1	113	139	22.3967
(((((.((...........)).))))	chr11:320555-320777(-)$1	1	59	85	21.0049
((.((((............)))).))	chr19:39334563-39334790(-)$1	1	154	180	24.9780
((.((((.............))))))	chr2:55460398-55460611(+)$1	1	23	49	23.6869
.(.((((............)))).))	chr15:30011129-30011386(-)$1	1	152	178	24.7673
..(((((............)))))..	chr16:46712923-46713170(-)$1	1	41	67	22.7482
((..(((............)))...)	chr1:167904947-167905164(-)$1	1	32	58	25.4643
(.(((((...........))))).))	chr19:39924064-39924266(-)$1	1	67	93	22.5947
((.((((..............).)))	chr17:80014064-80014313(+)$1	1	163	189	23.1247
((.((((...........))))..))	chr17:4851514-4851745(-)$1	1	121	147	22.0685
(((.(((.............))).))	chr16:2213898-2214102(+)$1	1	139	165	24.2470
(.(((((............)))))))	chr2:176794589-176794805(-)$1	1	136	162	24.3287
.((((((............)))))))	chr1:149858749-149858962(+)$1	1	65	91	23.1344
((.((((............)))))))	chr2:101619063-101619290(+)$1	1	122	148	24.0445
..(((((..............)))))	chr2:220115765-220115990(-)$1	1	65	91	23.3489
(((.(((............))).)))	chr1:54509075-54509299(-)$1	1	68	94	24.9289
(..((((............))))..)	chr5:33456153-33456366(+)$1	1	168	194	24.5403
.(((((.............)))))..	chr11:120343682-120343922(+)$1	1	173	199	22.7532
((.(((..............))).))	chr13:98641231-98641453(+)$1	1	42	68	24.0516
((..(((............)))..))	chr18:77737508-77737736(-)$1	1	137	163	24.7046
.((((...............))).).	chr6:31807285-31807490(+)$1	1	43	69	18.8074
((((.((..............)).))	chr1:17354231-17354460(-)$1	1	102	128	22.5311
(.(((((............)))))..	chr9:124115458-124115673(-)$1	1	87	113	24.8280
(((..((............))..)))	chr11:62291135-62291359(-)$1	1	106	132	22.4379
((.(((............))).)))(	chr14:102467845-102468055(+)$1	1	35	61	22.4757
((((.((.............))...)	chr1:54675547-54675766(+)$1	1	103	129	23.9643
....(((............)))..))	chr17:37008789-37008991(-)$1	1	91	117	24.6873
(.(((((............)))))))	chr5:176764265-176764502(-)$1	1	19	45	24.5107
..(((...............)))..)	chr19:2129230-2129503(-)$1	1	90	116	18.7387
.((((..............)))).))	chr9:123632098-123632309(-)$1	1	99	125	22.8978
((((((.............)))))))	chr19:34957785-34958016(+)$1	1	77	103	23.8511
.((((.(............).)))))	chr19:5896827-5897085(-)$1	1	54	80	23.6553
((.(((((...........))).)).	chr1:24745927-24746179(+)$1	1	92	118	21.6888
.(((((.............)))))..	chr6:13307857-13308078(-)$1	1	86	112	24.3259
(((((((............)))))))	chr1:115282266-115282517(-)$1	1	87	113	24.2138
..(((((............)))))..	chr18:34378387-34378594(-)$1	1	143	169	24.4402
.((((((............)))))).	chr20:34143777-34143993(+)$1	1	72	98	21.2604
...((((............))))...	chr6:157527803-157528047(+)$1	1	84	110	21.9008
(((((((...........)))))..)	chr6:26199681-26199891(+)$1	1	92	118	22.8907
....(((............)))...)	chr1:1747193-1747400(-)$1	1	126	152	22.9995
(((((((............))))...	chr3:128344651-128344888(-)$1	1	13	39	24.5391
(((((((..............)))))	chr11:64785821-64786047(+)$1	1	59	85	23.1253
.((((((............)))).))	chr5:115249033-115249295(+)$1	1	88	114	23.6324

#PSSM
g : 0.15	c : 0.09	e : 0.09	f : 0.08	[ : 0.08	= : 0.06	: : 0.06	d : 0.05	b : 0.05	$ : 0.05	h : 0.03	& : 0.03	" : 0.03	# : 0.03	! : 0.03	i : 0.01	% : 0.01	
g : 0.15	f : 0.11	e : 0.11	[ : 0.09	d : 0.08	c : 0.06	= : 0.05	b : 0.05	" : 0.05	h : 0.03	$ : 0.03	a : 0.03	& : 0.03	! : 0.03	: : 0.01	i : 0.01	# : 0.01	
e : 0.26	[ : 0.16	g : 0.13	f : 0.08	! : 0.06	d : 0.06	c : 0.05	$ : 0.03	h : 0.01	= : 0.01	" : 0.01	a : 0.01	i : 0.01	# : 0.01	& : 0.01	b : 0.01	
e : 0.23	d : 0.21	g : 0.13	c : 0.09	f : 0.06	! : 0.06	[ : 0.06	h : 0.01	$ : 0.01	= : 0.01	" : 0.01	# : 0.01	b : 0.01	& : 0.01	
e : 0.23	d : 0.23	c : 0.23	g : 0.08	[ : 0.06	f : 0.05	b : 0.03	h : 0.01	$ : 0.01	= : 0.01	! : 0.01	
e : 0.23	c : 0.23	d : 0.18	b : 0.11	g : 0.08	[ : 0.03	f : 0.03	x : 0.03	h : 0.01	= : 0.01	w : 0.01	
e : 0.18	d : 0.18	c : 0.18	b : 0.11	v : 0.08	g : 0.06	a : 0.03	f : 0.03	w : 0.03	x : 0.03	h : 0.01	= : 0.01	u : 0.01	
u : 0.49	v : 0.19	w : 0.09	t : 0.08	c : 0.03	x : 0.03	d : 0.01	= : 0.01	b : 0.01	
u : 0.49	v : 0.19	t : 0.16	w : 0.09	x : 0.03	
u : 0.49	v : 0.19	t : 0.16	w : 0.09	x : 0.03	
u : 0.49	v : 0.19	t : 0.16	w : 0.09	x : 0.03	
u : 0.49	v : 0.19	t : 0.16	w : 0.09	x : 0.03	
u : 0.49	v : 0.19	t : 0.16	w : 0.09	x : 0.03	
u : 0.49	v : 0.19	t : 0.16	w : 0.09	x : 0.03	
u : 0.49	v : 0.19	t : 0.16	w : 0.09	x : 0.03	
u : 0.49	v : 0.19	t : 0.16	w : 0.09	x : 0.03	
u : 0.49	v : 0.19	t : 0.16	w : 0.09	x : 0.03	
u : 0.49	v : 0.19	t : 0.16	w : 0.09	x : 0.03	
u : 0.48	v : 0.19	w : 0.09	t : 0.08	c : 0.03	e : 0.03	x : 0.03	b : 0.01	d : 0.01	
d : 0.18	c : 0.18	e : 0.16	v : 0.11	b : 0.08	w : 0.08	g : 0.06	f : 0.03	x : 0.03	h : 0.01	= : 0.01	a : 0.01	
c : 0.24	e : 0.21	d : 0.19	b : 0.09	g : 0.06	w : 0.06	f : 0.03	h : 0.01	4 : 0.01	= : 0.01	] : 0.01	
e : 0.23	d : 0.21	c : 0.21	g : 0.08	b : 0.05	] : 0.05	2 : 0.03	4 : 0.03	f : 0.03	h : 0.01	= : 0.01	a : 0.01	
e : 0.23	d : 0.19	2 : 0.09	] : 0.09	g : 0.08	c : 0.08	f : 0.05	3 : 0.05	4 : 0.03	h : 0.01	= : 0.01	a : 0.01	b : 0.01	
e : 0.19	] : 0.18	2 : 0.13	g : 0.09	f : 0.08	d : 0.06	3 : 0.06	c : 0.05	4 : 0.03	h : 0.01	= : 0.01	i : 0.01	b : 0.01	5 : 0.01	
e : 0.15	g : 0.15	f : 0.09	3 : 0.09	2 : 0.08	d : 0.08	c : 0.06	b : 0.06	= : 0.05	a : 0.03	h : 0.01	F : 0.01	4 : 0.01	8 : 0.01	i : 0.01	6 : 0.01	5 : 0.01	
g : 0.16	e : 0.13	c : 0.09	d : 0.09	f : 0.08	] : 0.06	= : 0.06	b : 0.06	3 : 0.05	: : 0.03	h : 0.01	F : 0.01	8 : 0.01	i : 0.01	6 : 0.01	a : 0.01	2 : 0.01	5 : 0.01	

#score	1395.0339533532322
#seq	60
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_UTR_m2_run1.txt

#BEAR
gggg[a[eeeeeooooooeeeeea]ggggg	chr6:30568322-30568650(-)$1	328	243	273	13.2432
cc!!dddd[cccooooooccc]dddd22cc	chr8:145067168-145067436(+)$1	268	177	207	15.2146
==========cccmmmmccc22========	chr6:52367385-52367644(-)$1	259	93	123	13.5395
========[cccooooooccc]========	chr6:36891799-36892058(+)$1	259	210	240	18.9370
=========[bboooooobb]=========	chr11:102269174-102269434(-)$1	260	6	36	17.1285
bb==========mmmm==========4444	chr5:179157395-179157654(+)$1	259	175	205	12.9766
eee!!ccc[cccooooooccc]ccc22eee	chr5:179156471-179156712(+)$1	241	182	212	15.6665
c"""ffffff[aooooooa]ffffff22cc	chr17:26880601-26880951(-)$1	350	117	147	13.0899
iiiiii"""cccooooooccc]iiiiiiii	chr7:139255697-139255947(-)$1	250	144	174	17.7693
========[cccooooooccc]========	chr6:36891858-36892141(+)$1	283	151	181	18.9370
=======!!cccooooooccc22=======	chr17:53401402-53401661(+)$1	259	5	35	18.5103
::cccgggggggooooooggggggg]ccc:	chr22:29190648-29190891(-)$1	243	167	197	12.6097
:=============lll=============	chr9:136228979-136229242(-)$1	263	144	174	13.8633
cca[eeeee[bboooooobb22eeeee]a]	chr6:32136299-32136558(-)$1	259	99	129	13.0890
ggggggg!!cccrrrrrrrrrccc333ggg	chr16:57417260-57417559(+)$1	299	112	142	11.4288
"bb[dddd[cccooooooccc]dddd]bb3	chr9:136229999-136230238(-)$1	239	7	37	14.5326
Eccc[gggggggoooooogggggggccc::	chr6:7586191-7586451(+)$1	260	7	37	12.6859
cc"""ccc[cccooooooccc22ccc4444	chr2:54895739-54895988(+)$1	249	8	38	16.9253
:ffffff!!cccooooooccc22ffffff:	chr20:54942697-54942985(+)$1	288	257	287	12.7211
::==========oooooo==========::	chr16:57290001-57290308(-)$1	307	259	289	14.2269
============oooooo============	chr17:75494738-75495037(+)$1	299	183	213	18.2285
dddd[ccc[cccooooooccc22ccc]ddd	chr5:10680046-10680317(-)$1	271	65	95	15.1115
:dddd[ccccccooooooccc]ccc22ddd	chr3:52558982-52559220(-)$1	238	174	204	13.6090
ggggiiiiiiiiinnnnniiiiiiiii444	chr5:179156345-179156603(+)$1	258	53	83	12.3790
=======!!cccooooooccc22=======	chr17:40126031-40126310(+)$1	279	191	221	18.5103
cc[ffffff!!aooooooa22ffffff]cc	chr2:216225744-216225974(-)$1	230	62	92	12.7316
======####ccclllccc333========	chr14:101201188-101201443(+)$1	255	126	156	13.8105
========[ddddllldddd22========	chr3:49572758-49573038(+)$1	280	227	257	12.4601
:=============lll=============	chr9:136228945-136229176(-)$1	231	78	108	13.8633
eccc[ccc[cccooooooccc]ccc22ccc	chr6:111215051-111215344(+)$1	293	58	88	16.3248
============oooooo============	chr20:377567-377848(+)$1	281	108	138	18.2285
gggggccc[cccoooooocccccc22gggg	chr12:57107219-57107438(-)$1	219	126	156	15.7006
dd!!dddd[cccooooooccc]dddd333d	chr12:110784632-110784875(+)$1	243	65	95	15.1950
c"""ccc"""bboooooobb]ccc333ccc	chr1:150938434-150938692(-)$1	258	101	131	15.1745
eeeee####cccooooooccc22eeeee77	chr12:53856218-53856433(+)$1	215	86	116	13.3678
==========cccmmmmccc22========	chr6:52367444-52367702(-)$1	258	151	181	13.5395
:ccc[ccc[cccoooooocccccc]ccc:F	chr19:3976221-3976476(-)$1	255	21	51	13.8389
b[==========lll==========]bbcc	chr2:27549211-27549484(-)$1	273	196	226	13.0410
iiiiiiiii[bboooooobbiiiiiiiii9	chr3:183960499-183960801(-)$1	302	161	191	15.4163
cc!!dddd[cccooooooccc]dddd22cc	chrX:108885105-108885327(-)$1	222	129	159	15.2146
cc[ccc[eeeeeooooooeeeee22ccc22	chr7:137564744-137564985(-)$1	241	118	148	12.1565
[bb[dddd[cccooooooccc]dddd]bb]	chr22:38259176-38259452(+)$1	276	52	82	14.5053
g$$$$$ffffffooooooffffff4444gg	chr12:66358299-66358578(+)$1	279	208	238	12.5833
hhhh$$$$$cccooooooccc22hhhhhhh	chr2:65540397-65540670(-)$1	273	162	192	12.6939
%ccc[bb"""bboooooobb333bb]cccf	chr15:74005491-74005813(+)$1	322	204	234	13.6547
!ccc[gggggggooooooggggggg]ccc2	chr17:37006359-37006567(-)$1	208	94	124	15.5048
eee!!ccc[ccc[aooooooa]cccccc]e	chr4:79462680-79462940(+)$1	260	98	128	13.1650
&&bb[gggggggoooooogggggggbbggg	chr19:57323806-57324084(-)$1	278	144	174	13.0151
cc"""gggggggooooooggggggg]ccc]	chr13:30087506-30087756(-)$1	250	65	95	15.9670
============oooooo============	chr8:17423664-17423912(+)$1	248	92	122	18.2285
eeeeegggggggooooooggggggg]eeee	chr12:50156818-50157086(+)$1	268	2	32	13.9092

#otherMatches

#Seq PSSM
AUCCCCACCAGGCGCCUUCCUGGGUGGAUU	chr6:30568322-30568650(-)$1	328	243	273	13.2432
AGCCAAGAGGUGAGGGUGCACGUCUUCCCU	chr8:145067168-145067436(+)$1	268	177	207	15.2146
GCCUGCCGGUCAGAAGCCUGGGGCUGGUAG	chr6:52367385-52367644(-)$1	259	93	123	13.5395
GGCAGCACUGCUCUCGUCAGCUGUGUUGCC	chr6:36891799-36892058(+)$1	259	210	240	18.9370
GGUUUGGGUUUUGAAAUAAACAUCUGGAUC	chr11:102269174-102269434(-)$1	260	6	36	17.1285
GCUGAGCUUUAAAUCAUUAGAGCUUAAAUU	chr5:179157395-179157654(+)$1	259	175	205	12.9766
AUGUUUCUUCUUUCUUUUAAGCAGACCCAU	chr5:179156471-179156712(+)$1	241	182	212	15.6665
CCUAGCCCCUGCUGUCAUGAAGGGGCCAGG	chr17:26880601-26880951(-)$1	350	117	147	13.0899
UGGAAAAACUCACACAGUUGAAUUUCCAAA	chr7:139255697-139255947(-)$1	250	144	174	17.7693
GGCAGCACUGCUCUCGUCAGCUGUGUUGCC	chr6:36891858-36892141(+)$1	283	151	181	18.9370
GGGAGGGCUGUAGAUCAUUACUUCUUUCUC	chr17:53401402-53401661(+)$1	259	5	35	18.5103
CCUGCUGAGGGGGCUCUUUCCCUCAUGUAU	chr22:29190648-29190891(-)$1	243	167	197	12.6097
CUGGGGACAGGCUGGCUCAGCCUGUCUCCA	chr9:136228979-136229242(-)$1	263	144	174	13.8633
GCCUGCCCUUGCCCAGAUGCCCAGGGUCGU	chr6:32136299-32136558(-)$1	259	99	129	13.0890
GCUGCAGUUGCCAGUCACCCCGGCCACCUG	chr16:57417260-57417559(+)$1	299	112	142	11.4288
CUUUAUUUGCAGAGACACCUGAGAAUCGAU	chr9:136229999-136230238(-)$1	239	7	37	14.5326
UGCAGUAGAGUGAUAGGACAUUCUAUGCUU	chr6:7586191-7586451(+)$1	260	7	37	12.6859
UGAAAUUCCAGCAUGCAAGCUCAGAACCAA	chr2:54895739-54895988(+)$1	249	8	38	16.9253
CCACAAGGCUAAAUAAAAUUACAUUUGUGA	chr20:54942697-54942985(+)$1	288	257	287	12.7211
UGuuuuauuuuuuuuaauaaaaauaaaGAU	chr16:57290001-57290308(-)$1	307	259	289	14.2269
GCGGCCUCCCCGAGGUUGUGGGGAGGCUGC	chr17:75494738-75495037(+)$1	299	183	213	18.2285
CAUUUGUGCUAGAAAAACCUAUCCACUGAU	chr5:10680046-10680317(-)$1	271	65	95	15.1115
ACACGGAGCAGUACAUGCACUCGCUGACGU	chr3:52558982-52559220(-)$1	238	174	204	13.6090
CUUGGGAGGGUCAGGCUGUGGCCUUCUGGA	chr5:179156345-179156603(+)$1	258	53	83	12.3790
CAGAACCCCGAGCCCUACUUCCAGGUUCUG	chr17:40126031-40126310(+)$1	279	191	221	18.5103
CAAACACUUCUGCUUUCACUUAAGUGUCUG	chr2:216225744-216225974(-)$1	230	62	92	12.7316
UCGCUAUCUCUUGUGUCAAAUCUGGUGAAC	chr14:101201188-101201443(+)$1	255	126	156	13.8105
UGUGUUUUCUGCAUUCUGUAAAGAAACAUA	chr3:49572758-49573038(+)$1	280	227	257	12.4601
CUGGGGACAGGCUGGCUCAGCCUGUCUCCA	chr9:136228945-136229176(-)$1	231	78	108	13.8633
UUGUGAAAGCAACUCAAUUUGGUUUAUGCA	chr6:111215051-111215344(+)$1	293	58	88	16.3248
UACCAGUGUCGGCCUCCACUGAUGCUGGUG	chr20:377567-377848(+)$1	281	108	138	18.2285
ACUUUUCUUGGGCAUUGUUCCAGACcaggg	chr12:57107219-57107438(-)$1	219	126	156	15.7006
AUUUAAUUUGAUAUCACAGUCUAAUUUUUA	chr12:110784632-110784875(+)$1	243	65	95	15.1950
AUAAAGCCAAGGAACUACCCCGCUCCCUGC	chr1:150938434-150938692(-)$1	258	101	131	15.1745
ACCGGCCCAAGCCGUCCAGCUCUCCGGUCA	chr12:53856218-53856433(+)$1	215	86	116	13.3678
GCCUGCCGGUCAGAAGCCUGGGGCUGGUAG	chr6:52367444-52367702(-)$1	258	151	181	13.5395
ACAGCGACGCUCCCCUGAGAGGUUUCUGGG	chr19:3976221-3976476(-)$1	255	21	51	13.8389
CACUCAGGCCUGACCUAGGCUUGGGAGUCA	chr2:27549211-27549484(-)$1	273	196	226	13.0410
UGUGGGCCAUGCCUGCACGCUGGCUCACAC	chr3:183960499-183960801(-)$1	302	161	191	15.4163
UGUUUAUGUAAACAAAUCUUUCCAUAUCCA	chrX:108885105-108885327(-)$1	222	129	159	15.2146
AGAUGGCUCUUGUUCAGUCAAGACCCCAGA	chr7:137564744-137564985(-)$1	241	118	148	12.1565
UGGGCAGAGUCAUUGCUUUGAAUCUGACUU	chr22:38259176-38259452(+)$1	276	52	82	14.5053
UUCUAUGuuuuuuuaauuaaaaauuuuuaa	chr12:66358299-66358578(+)$1	279	208	238	12.5833
UGGUACCUCGAGGCACCAUUCCAGCCAGGG	chr2:65540397-65540670(-)$1	273	162	192	12.6939
CUGCCUUAUUUCACCAAAGACACGAUGCAU	chr15:74005491-74005813(+)$1	322	204	234	13.6547
AUGCAGGUUCUGCCAUUACAGGACCAGUAG	chr17:37006359-37006567(-)$1	208	94	124	15.5048
UAUAUUUGCUCAUGAUUUCACUUGACAGCG	chr4:79462680-79462940(+)$1	260	98	128	13.1650
CCUGUGCAGCAUCAGCUUAUGCUGCCACAA	chr19:57323806-57324084(-)$1	278	144	174	13.0151
GCUUUGGAGCCAGUCUGGUGGCUCCUGUAA	chr13:30087506-30087756(-)$1	250	65	95	15.9670
UUCUUUUGUCUUGUCUUAGAGAUGAGGGGG	chr8:17423664-17423912(+)$1	248	92	122	18.2285
AUUUUUUGAUCAAAAAACUGAUUAGCAGAA	chr12:50156818-50157086(+)$1	268	2	32	13.9092

#DB
((((.(.(((((......)))))).)))))	chr6:30568322-30568650(-)$1	1	243	273	13.2432
((..((((.(((......))).))))..))	chr8:145067168-145067436(+)$1	1	177	207	15.2146
(((((((((((((....)))..))))))))	chr6:52367385-52367644(-)$1	1	93	123	13.5395
((((((((.(((......))).))))))))	chr6:36891799-36892058(+)$1	1	210	240	18.9370
(((((((((.((......)).)))))))))	chr11:102269174-102269434(-)$1	1	6	36	17.1285
((((((((((((....))))))))))....	chr5:179157395-179157654(+)$1	1	175	205	12.9766
(((..(((.(((......))).)))..)))	chr5:179156471-179156712(+)$1	1	182	212	15.6665
(...((((((.(......).))))))..))	chr17:26880601-26880951(-)$1	1	117	147	13.0899
((((((...(((......))).))))))))	chr7:139255697-139255947(-)$1	1	144	174	17.7693
((((((((.(((......))).))))))))	chr6:36891858-36892141(+)$1	1	151	181	18.9370
(((((((..(((......)))..)))))))	chr17:53401402-53401661(+)$1	1	5	35	18.5103
..((((((((((......))))))).))).	chr22:29190648-29190891(-)$1	1	167	197	12.6097
.(((((((((((((...)))))))))))))	chr9:136228979-136229242(-)$1	1	144	174	13.8633
(((.(((((.((......))..))))).).	chr6:32136299-32136558(-)$1	1	99	129	13.0890
(((((((..(((.........)))...)))	chr16:57417260-57417559(+)$1	1	112	142	11.4288
.((.((((.(((......))).)))).)).	chr9:136229999-136230238(-)$1	1	7	37	14.5326
((((.(((((((......))))))))))..	chr6:7586191-7586451(+)$1	1	7	37	12.6859
((...(((.(((......)))..)))....	chr2:54895739-54895988(+)$1	1	8	38	16.9253
.((((((..(((......)))..)))))).	chr20:54942697-54942985(+)$1	1	257	287	12.7211
..((((((((((......))))))))))..	chr16:57290001-57290308(-)$1	1	259	289	14.2269
((((((((((((......))))))))))))	chr17:75494738-75495037(+)$1	1	183	213	18.2285
((((.(((.(((......)))..))).)))	chr5:10680046-10680317(-)$1	1	65	95	15.1115
.((((.((((((......))).)))..)))	chr3:52558982-52559220(-)$1	1	174	204	13.6090
(((((((((((((.....)))))))))...	chr5:179156345-179156603(+)$1	1	53	83	12.3790
(((((((..(((......)))..)))))))	chr17:40126031-40126310(+)$1	1	191	221	18.5103
((.((((((..(......)..)))))).))	chr2:216225744-216225974(-)$1	1	62	92	12.7316
((((((....(((...)))...))))))))	chr14:101201188-101201443(+)$1	1	126	156	13.8105
((((((((.((((...))))..))))))))	chr3:49572758-49573038(+)$1	1	227	257	12.4601
.(((((((((((((...)))))))))))))	chr9:136228945-136229176(-)$1	1	78	108	13.8633
((((.(((.(((......))).)))..)))	chr6:111215051-111215344(+)$1	1	58	88	16.3248
((((((((((((......))))))))))))	chr20:377567-377848(+)$1	1	108	138	18.2285
((((((((.(((......))))))..))))	chr12:57107219-57107438(-)$1	1	126	156	15.7006
((..((((.(((......))).))))...)	chr12:110784632-110784875(+)$1	1	65	95	15.1950
(...(((...((......)).)))...)))	chr1:150938434-150938692(-)$1	1	101	131	15.1745
(((((....(((......)))..)))))..	chr12:53856218-53856433(+)$1	1	86	116	13.3678
(((((((((((((....)))..))))))))	chr6:52367444-52367702(-)$1	1	151	181	13.5395
.(((.(((.(((......)))))).))).(	chr19:3976221-3976476(-)$1	1	21	51	13.8389
(.((((((((((...)))))))))).))((	chr2:27549211-27549484(-)$1	1	196	226	13.0410
(((((((((.((......))))))))))).	chr3:183960499-183960801(-)$1	1	161	191	15.4163
((..((((.(((......))).))))..))	chrX:108885105-108885327(-)$1	1	129	159	15.2146
((.(((.(((((......)))))..)))..	chr7:137564744-137564985(-)$1	1	118	148	12.1565
.((.((((.(((......))).)))).)).	chr22:38259176-38259452(+)$1	1	52	82	14.5053
(.....((((((......))))))....))	chr12:66358299-66358578(+)$1	1	208	238	12.5833
((((.....(((......)))..)))))))	chr2:65540397-65540670(-)$1	1	162	192	12.6939
.(((.((...((......))...)).))))	chr15:74005491-74005813(+)$1	1	204	234	13.6547
.(((.(((((((......))))))).))).	chr17:37006359-37006567(-)$1	1	94	124	15.5048
(((..(((.(((.(......).)))))).)	chr4:79462680-79462940(+)$1	1	98	128	13.1650
..((.(((((((......))))))))))))	chr19:57323806-57324084(-)$1	1	144	174	13.0151
((...(((((((......))))))).))).	chr13:30087506-30087756(-)$1	1	65	95	15.9670
((((((((((((......))))))))))))	chr8:17423664-17423912(+)$1	1	92	122	18.2285
((((((((((((......))))))).))))	chr12:50156818-50157086(+)$1	1	2	32	13.9092

#PSSM
= : 0.23	c : 0.17	: : 0.13	g : 0.09	e : 0.09	b : 0.03	i : 0.03	d : 0.03	" : 0.01	E : 0.01	[ : 0.01	h : 0.01	% : 0.01	! : 0.01	& : 0.01	
= : 0.27	c : 0.23	g : 0.07	e : 0.07	b : 0.05	d : 0.05	" : 0.03	i : 0.03	: : 0.03	f : 0.01	[ : 0.01	$ : 0.01	h : 0.01	& : 0.01	
= : 0.33	c : 0.11	g : 0.07	e : 0.07	" : 0.07	! : 0.05	b : 0.05	i : 0.03	d : 0.03	[ : 0.03	a : 0.01	f : 0.01	$ : 0.01	h : 0.01	
= : 0.33	c : 0.13	! : 0.09	g : 0.07	" : 0.07	[ : 0.05	i : 0.03	f : 0.03	d : 0.03	e : 0.03	$ : 0.01	h : 0.01	b : 0.01	
= : 0.33	[ : 0.15	d : 0.11	f : 0.05	i : 0.05	c : 0.05	e : 0.05	! : 0.03	g : 0.03	" : 0.03	$ : 0.03	
= : 0.33	c : 0.17	g : 0.13	d : 0.09	f : 0.05	i : 0.05	$ : 0.03	a : 0.01	e : 0.01	[ : 0.01	# : 0.01	b : 0.01	
= : 0.31	c : 0.17	g : 0.13	d : 0.09	f : 0.07	[ : 0.03	i : 0.03	# : 0.03	" : 0.01	e : 0.01	$ : 0.01	b : 0.01	
= : 0.27	c : 0.15	g : 0.11	d : 0.09	! : 0.07	e : 0.05	f : 0.05	" : 0.05	i : 0.03	# : 0.03	$ : 0.01	
[ : 0.29	= : 0.21	g : 0.11	! : 0.07	e : 0.05	f : 0.05	" : 0.05	i : 0.03	# : 0.03	c : 0.01	$ : 0.01	
c : 0.43	= : 0.19	g : 0.11	[ : 0.05	e : 0.03	f : 0.03	" : 0.03	i : 0.01	! : 0.01	# : 0.01	d : 0.01	
c : 0.49	= : 0.15	g : 0.11	b : 0.09	e : 0.03	[ : 0.01	i : 0.01	! : 0.01	d : 0.01	f : 0.01	
c : 0.49	= : 0.15	g : 0.11	b : 0.09	e : 0.03	a : 0.03	i : 0.01	d : 0.01	f : 0.01	
o : 0.78	c : 0.05	= : 0.03	m : 0.01	r : 0.01	i : 0.01	d : 0.01	l : 0.01	[ : 0.01	
o : 0.78	m : 0.05	l : 0.05	= : 0.03	r : 0.01	n : 0.01	a : 0.01	
o : 0.80	l : 0.09	m : 0.05	r : 0.01	n : 0.01	
o : 0.80	l : 0.07	m : 0.05	r : 0.01	n : 0.01	= : 0.01	
o : 0.80	m : 0.03	= : 0.03	l : 0.03	r : 0.01	n : 0.01	c : 0.01	d : 0.01	
o : 0.80	= : 0.07	c : 0.05	r : 0.01	n : 0.01	d : 0.01	
c : 0.45	= : 0.15	g : 0.11	b : 0.09	e : 0.03	a : 0.03	r : 0.01	i : 0.01	d : 0.01	f : 0.01	o : 0.01	
c : 0.43	= : 0.15	g : 0.11	b : 0.09	e : 0.03	] : 0.01	r : 0.01	i : 0.01	2 : 0.01	3 : 0.01	d : 0.01	f : 0.01	o : 0.01	
c : 0.39	= : 0.15	g : 0.11	2 : 0.09	e : 0.03	] : 0.03	f : 0.03	i : 0.03	3 : 0.03	r : 0.01	a : 0.01	
] : 0.23	2 : 0.21	= : 0.17	g : 0.11	c : 0.07	f : 0.05	e : 0.03	i : 0.03	3 : 0.03	
= : 0.29	c : 0.15	2 : 0.13	g : 0.11	d : 0.09	e : 0.05	f : 0.05	i : 0.05	3 : 0.01	
= : 0.33	c : 0.19	g : 0.11	d : 0.09	f : 0.07	i : 0.05	e : 0.03	a : 0.01	2 : 0.01	h : 0.01	b : 0.01	
= : 0.33	c : 0.11	g : 0.11	d : 0.09	f : 0.05	i : 0.05	] : 0.03	e : 0.03	3 : 0.03	2 : 0.03	4 : 0.01	h : 0.01	b : 0.01	
= : 0.31	] : 0.11	c : 0.11	d : 0.09	2 : 0.07	f : 0.05	i : 0.05	e : 0.03	3 : 0.03	g : 0.01	4 : 0.01	h : 0.01	b : 0.01	
= : 0.29	c : 0.15	2 : 0.11	4 : 0.05	i : 0.05	e : 0.05	3 : 0.05	] : 0.05	g : 0.03	f : 0.03	b : 0.03	h : 0.01	
= : 0.29	c : 0.19	g : 0.07	4 : 0.07	2 : 0.05	e : 0.05	b : 0.05	i : 0.03	] : 0.03	d : 0.03	f : 0.01	3 : 0.01	h : 0.01	
= : 0.27	c : 0.21	g : 0.09	4 : 0.05	: : 0.05	e : 0.03	i : 0.03	b : 0.03	d : 0.03	a : 0.01	f : 0.01	3 : 0.01	7 : 0.01	2 : 0.01	h : 0.01	] : 0.01	
= : 0.27	c : 0.13	g : 0.09	: : 0.07	4 : 0.05	e : 0.05	] : 0.05	d : 0.05	2 : 0.03	i : 0.01	3 : 0.01	7 : 0.01	F : 0.01	9 : 0.01	h : 0.01	f : 0.01	

#score	748.2257431378339
#seq	51
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF803GSP_RPS11_transcript_m2_run2.txt

#BEAR
ccc[a[ccc[cccmmmmccc22ccc]a]cc	chr1:22263547-22263814(-)$1	267	91	121	10.5207
fff"""cccrrrrrrrrrccc22ffffff:	chrM:516-733(+)$1	217	104	134	12.7536
gggggbb[cccooooooccc]bb]gggggg	chr19:893464-893689(+)$1	225	177	207	9.5805
ccc[cccddddoooooodddd]ccc]ccc:	chr5:79947513-79947762(-)$1	249	205	235	9.9828
[ccc^^^^^^^^^^^^^^^^^^^ccc]ddd	chr3:134502292-134502497(-)$1	205	24	54	13.2762
fff####cccpppppppccc333ffffffd	chr7:5340290-5340511(+)$1	221	73	103	12.4076
[ccc!!ddddoooooodddd22cccccc::	chr2:54197781-54198048(-)$1	267	3	33	10.2858
%bb[a[eeeeeccclllccc4444eeeee]	chr17:56408175-56408393(-)$1	218	93	123	9.4681
fff####cccpppppppccc333ffffffd	chr7:5340286-5340490(+)$1	204	77	107	12.4076
eee^^^^^^^^^^^^^^^^^^^^^^^eeee	chrM:12180-12410(+)$1	230	138	168	11.6563
gggg"""ccc!!aooooooa22ccc4444g	chrX:68892301-68892514(+)$1	213	164	194	13.0666
[ccc^^^^^^^^^^^^^^^^^^^ccc]ddd	chr3:134502255-134502492(-)$1	237	19	49	13.2762
ddd####eeeeerrrrrrrrreeeee333d	chr2:37359952-37360180(-)$1	228	150	180	10.5443
=====!!ddddnnnnndddd333=======	chr19:48259088-48259321(+)$1	233	90	120	10.6484

#otherMatches

#Seq PSSM
cgcgggccgggccaugggguggcgggcggc	chr1:22263547-22263814(-)$1	267	91	121	10.5207
UUAGACGGGCUCACAUCACCCCAUAAACAA	chrM:516-733(+)$1	217	104	134	12.7536
ggcuggaaugcaauggcgcgaucuuagcuu	chr19:893464-893689(+)$1	225	177	207	9.5805
UCACCUGAGUUGUAAAAAACUCCAGUUGAU	chr5:79947513-79947762(-)$1	249	205	235	9.9828
caucauuuaaaagacaaauaucagauuggu	chr3:134502292-134502497(-)$1	205	24	54	13.2762
AGGCUAGACCGCAGGAAGGUGCAUUUGGGU	chr7:5340290-5340511(+)$1	221	73	103	12.4076
UCCGAGGGCGACGGGCCGCCAGCGGCCGCA	chr2:54197781-54198048(-)$1	267	3	33	10.2858
GGGGAAUGGGUGGUGGGACCAGGGACCCAA	chr17:56408175-56408393(-)$1	218	93	123	9.4681
AGGCUAGACCGCAGGAAGGUGCAUUUGGGU	chr7:5340286-5340490(+)$1	204	77	107	12.4076
GCAACUCCAAAUAAAAGUAAUAACCAUGCA	chrM:12180-12410(+)$1	230	138	168	11.6563
cuguaaugccagcacuuugggaggccgagg	chrX:68892301-68892514(+)$1	213	164	194	13.0666
caucauuuaaaagacaaauaucagauuggu	chr3:134502255-134502492(-)$1	237	19	49	13.2762
cagaaccaaaagaaaucgaaccuuuuuuac	chr2:37359952-37360180(-)$1	228	150	180	10.5443
UGGGCUGGGCCAGUGGGGCCAAUGCCCAGG	chr19:48259088-48259321(+)$1	233	90	120	10.6484

#DB
(((.(.(((.(((....)))..))).).))	chr1:22263547-22263814(-)$1	1	91	121	10.5207
(((...(((.........)))..)))))).	chrM:516-733(+)$1	1	104	134	12.7536
(((((((.(((......))).)).))))))	chr19:893464-893689(+)$1	1	177	207	9.5805
(((.(((((((......)))).))).))).	chr5:79947513-79947762(-)$1	1	205	235	9.9828
.(((...................))).)))	chr3:134502292-134502497(-)$1	1	24	54	13.2762
(((....(((.......)))...)))))))	chr7:5340290-5340511(+)$1	1	73	103	12.4076
.(((..((((......))))..))))))..	chr2:54197781-54198048(-)$1	1	3	33	10.2858
.((.(.((((((((...)))....))))).	chr17:56408175-56408393(-)$1	1	93	123	9.4681
(((....(((.......)))...)))))))	chr7:5340286-5340490(+)$1	1	77	107	12.4076
(((.......................))))	chrM:12180-12410(+)$1	1	138	168	11.6563
((((...(((..(......)..)))....)	chrX:68892301-68892514(+)$1	1	164	194	13.0666
.(((...................))).)))	chr3:134502255-134502492(-)$1	1	19	49	13.2762
(((....(((((.........)))))...)	chr2:37359952-37360180(-)$1	1	150	180	10.5443
(((((..((((.....))))...)))))))	chr19:48259088-48259321(+)$1	1	90	120	10.6484

#PSSM
f : 0.21	[ : 0.21	c : 0.14	g : 0.14	% : 0.07	e : 0.07	d : 0.07	= : 0.07	
c : 0.35	f : 0.21	g : 0.14	b : 0.07	e : 0.07	d : 0.07	= : 0.07	
c : 0.35	f : 0.21	g : 0.14	b : 0.07	e : 0.07	d : 0.07	= : 0.07	
[ : 0.21	c : 0.21	# : 0.21	g : 0.14	" : 0.07	^ : 0.07	= : 0.07	
^ : 0.21	# : 0.21	a : 0.14	" : 0.14	g : 0.07	c : 0.07	! : 0.07	= : 0.07	
^ : 0.21	# : 0.21	[ : 0.14	" : 0.14	! : 0.14	b : 0.07	c : 0.07	
c : 0.21	^ : 0.21	# : 0.21	b : 0.07	d : 0.07	e : 0.07	" : 0.07	! : 0.07	
c : 0.35	d : 0.21	^ : 0.21	e : 0.14	[ : 0.07	
c : 0.42	d : 0.21	^ : 0.21	e : 0.14	
c : 0.28	d : 0.21	^ : 0.21	e : 0.14	[ : 0.07	r : 0.07	
^ : 0.21	c : 0.14	d : 0.14	p : 0.14	e : 0.14	r : 0.07	o : 0.07	! : 0.07	
o : 0.21	^ : 0.21	c : 0.14	p : 0.14	r : 0.07	! : 0.07	e : 0.07	n : 0.07	
o : 0.21	^ : 0.21	c : 0.14	r : 0.14	p : 0.14	a : 0.07	n : 0.07	
o : 0.28	^ : 0.21	r : 0.14	p : 0.14	m : 0.07	c : 0.07	n : 0.07	
o : 0.28	^ : 0.21	r : 0.14	p : 0.14	m : 0.07	l : 0.07	n : 0.07	
o : 0.28	^ : 0.21	r : 0.14	p : 0.14	m : 0.07	l : 0.07	n : 0.07	
o : 0.21	^ : 0.21	r : 0.14	p : 0.14	d : 0.14	m : 0.07	l : 0.07	
c : 0.35	d : 0.21	^ : 0.21	r : 0.14	o : 0.07	
c : 0.42	d : 0.21	^ : 0.21	o : 0.07	r : 0.07	
c : 0.42	d : 0.21	^ : 0.21	a : 0.07	r : 0.07	
2 : 0.21	^ : 0.21	3 : 0.21	c : 0.07	] : 0.07	d : 0.07	4 : 0.07	r : 0.07	
2 : 0.28	^ : 0.21	3 : 0.21	b : 0.07	] : 0.07	4 : 0.07	e : 0.07	
c : 0.28	^ : 0.21	3 : 0.21	2 : 0.07	b : 0.07	4 : 0.07	e : 0.07	
c : 0.42	f : 0.21	] : 0.07	4 : 0.07	^ : 0.07	e : 0.07	= : 0.07	
c : 0.42	f : 0.21	e : 0.14	g : 0.07	^ : 0.07	= : 0.07	
f : 0.21	c : 0.21	] : 0.14	e : 0.14	g : 0.07	^ : 0.07	4 : 0.07	= : 0.07	
f : 0.21	c : 0.14	] : 0.14	e : 0.14	a : 0.07	g : 0.07	4 : 0.07	3 : 0.07	= : 0.07	
f : 0.21	c : 0.14	d : 0.14	e : 0.14	] : 0.07	g : 0.07	4 : 0.07	3 : 0.07	= : 0.07	
f : 0.21	c : 0.14	d : 0.14	e : 0.14	g : 0.07	: : 0.07	4 : 0.07	3 : 0.07	= : 0.07	
d : 0.35	: : 0.21	g : 0.14	c : 0.07	] : 0.07	e : 0.07	= : 0.07	

#score	159.8752505054929
#seq	14
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_UTR_m1_run1.txt

#BEAR
cc!!ccc"""bbbb[cccooooooccc22bb]bb333cc	chr14:102549277-102549534(-)$1	257	10	49	15.1765
$$$$$ccc!!ccc[bb[bbnnnnnbb]bb333ccc22cc	chr19:4499428-4499668(+)$1	240	141	180	12.6955
ee[a####ccc!!bb[bboooooobb]bb22ccc333a]	chr16:89350383-89350616(-)$1	233	101	140	15.7723
dddd####ccc!!bb[bboooooobb]bb22ccc22ddd	chr7:102065468-102065714(+)$1	246	110	149	14.1753
b[ddddiiiiiiiii!!bboooooobb]iiiiiiiii]d	chr2:61408385-61408614(+)$1	229	55	94	15.0688
ddd$$$$$cccbb[ddddoooooodddd]bb22cccddd	chr16:89346589-89346878(-)$1	289	208	247	11.7457
f!!bb[ccc[bb"""ddddooooooddddbb]ccc]bb3	chr8:144407450-144407783(-)$1	333	88	127	13.3357
!ccc[ffffff[abb[aooooooabb]a]ffffff]ccc	chr1:39790263-39790495(+)$1	232	154	193	13.4750
ccc"""a[bbcccddddbbnnnnnbb]dddd]ccc]bba	chr17:17722628-17722851(-)$1	223	109	148	12.9412
b[ddddiiiiiiiii!!bboooooobb]iiiiiiiii]d	chr2:61408362-61408585(+)$1	223	78	117	15.0688
h:bb[bb!!bbeeeee[bboooooobb22eeeee333bb	chrX:53439048-53439296(-)$1	248	97	136	10.8858
!!iiiiiiiii[bbssssssssssbb]iiiiiiiiiggg	chr22:50018193-50018424(-)$1	231	68	107	11.1245
===========[eeeeeooooooeeeee]==========	chr8:38854436-38854722(+)$1	286	4	43	13.1963
!!a[bb[eeeee[bb[bboooooobb333bb]eeeeebb	chr7:933243-933538(+)$1	295	186	225	14.0216
b[iiiiiiiii!!ccc[cccmmmmcccccciiiiiiiii	chrX:153178677-153178968(-)$1	291	183	222	12.7691
ddd"""ggggggg####ddddooooooddddggggggg5	chr19:55649315-55649543(-)$1	228	59	98	10.7409
ccc[hhhhhhhh[a!!cccmmmmccc22ahhhhhhhh]c	chr11:6566343-6566620(+)$1	277	108	147	10.8489
hhhhhhhhccc!!ddddoooooodddd]ccc]hhhhhhh	chr11:65820043-65820279(+)$1	236	33	72	11.3668
ggggccc[ccc[bb[ddddnnnnndddd]bbccc]ccc:	chr19:1817133-1817391(-)$1	258	98	137	12.5351
ggggg####bb####ddddooooooddddbb4444gggg	chr2:131975720-131975982(+)$1	262	215	254	13.6166
gg####eeeeebba!!cccooooooccc22a]bb]eeee	chr2:232577052-232577316(+)$1	264	177	216	13.2817
c"""ccc[dddd[bb[bboooooobb]bb]ddddccc]c	chr1:39776511-39776770(+)$1	259	209	248	13.5866
gg####ccc[ccc!!eeeeellleeeeeccc]cccgggg	chr7:5569349-5569639(-)$1	290	144	183	11.6338
d[ccc[bb[bb[bb[cccooooooccc]bb]bbbb]ccc	chr19:5612438-5612679(-)$1	241	44	83	13.3513
###eeeee[bb!!ddddoooooodddd22bbeeeee333	chr1:109780351-109780618(+)$1	267	137	176	12.1227
f!!ffffff[bbccc!!bbnnnnnbb22ccc]bb22fff	chr1:59249180-59249443(-)$1	263	115	154	12.8315
ccc####hhhhhhhh[bboooooobb22hhhhhhhh22c	chr12:133252585-133252846(-)$1	261	196	235	13.7449
dd==========$$$$$ccclllccc4444=========	chr11:110150303-110150541(-)$1	238	141	180	13.6849
gggggggggdddd!!a[ccclllccc]a22dddd]gggg	chr9:139730328-139730563(+)$1	235	187	226	11.3997
ddd!!cccccc!!ccc[bbnnnnnbbccc22ccc66666	chr19:47228694-47228956(-)$1	262	186	225	11.8179
hhhh####===========nnnnn===========hhhh	chr5:96108245-96108538(+)$1	293	163	202	13.6582
eeeeeee[a"""bb"""cccaooooooa]ccc22bba]e	chr7:6461254-6461493(-)$1	239	159	198	10.9047
eeeee####ggggggg[bbnnnnnbb]ggggggg4444e	chrX:118986701-118986995(-)$1	294	28	67	13.3199
iii[dddd[bb[ccc[aooooooa]ccc]bb]ddddiii	chr9:35689852-35690156(-)$1	304	161	200	12.8197
#hhhhhhhh"""ccc[cccnnnnnccc]ccchhhhhhhh	chr22:22321872-22322109(-)$1	237	71	110	11.5733
ddd[ccc[ccc!!bbddddllldddd333bb22ccc888	chr12:56572090-56572436(-)$1	346	204	243	11.5426
ccc!!bb[bbffffff!!aooooooa22ffffff]bb]b	chr17:4575257-4575595(-)$1	338	209	248	12.1644
eeeee!!ggggggg!!ddddllldddd22ggggggg22e	chr12:56565412-56565663(-)$1	251	108	147	11.6341
e[iiiiiiiii[bb"""bbnnnnnbb333bb]iiiiiii	chr20:57242955-57243269(+)$1	314	97	136	17.0013
b[ddddiiiiiiiii!!bboooooobb]iiiiiiiii]d	chr2:61408354-61408562(+)$1	208	86	125	15.0688
!!ccc!!ccc"""a[ddddmmmmdddda333ccc]ccc4	chr7:100483919-100484154(+)$1	235	142	181	12.4735
###a[bb[ccc!!bbrrrrrrrrrbb22ccc]bb]a22c	chr3:184040321-184040577(+)$1	256	81	120	12.4460
fffff[dddd[bb"""cccnnnnnccc333bb]dddd33	chr19:10262377-10262623(-)$1	246	102	141	11.7352
===!!bb$$$$$ddddoooooodddd333bb22======	chr13:31035388-31035658(-)$1	270	147	186	11.5384
e!!a[ffffff[bb[cccaooooooa]cccbbffffff]	chr7:77378746-77379040(+)$1	294	169	208	13.3652
dd[dddd[ccc[bb!!bboooooobb22bbccc]dddd5	chrX:152937408-152937655(-)$1	247	57	96	13.7705
d[ccc[bbccc[bb####cccnnnnnccc4444bbccc]	chr11:118919443-118919682(-)$1	239	30	69	10.5284
Fddddbb!!bb!!ccc[bbnnnnnbb]ccc22bb22bb2	chr3:128211706-128211984(+)$1	278	234	273	11.9662
b[a"""hhhhhhhh!!bboooooobb22hhhhhhhh333	chr14:105929467-105929693(+)$1	226	148	187	14.8527
cccc[eeeee"""bba[bbnnnnnbb]a]bbeeeee]cc	chrX:152953489-152953715(+)$1	226	104	143	13.2849
b[ccc[iiiiiiiii!!ccclllccc22iiiiiiiii]c	chr7:5569467-5569694(-)$1	227	150	189	14.5483
ee[bbbb[ccc####ddddnnnnndddd4444ccc]bb]	chr7:72988594-72988890(-)$1	296	202	241	12.4259
bb####ffffff[ccc[bbnnnnnbb22ccc]ffffff5	chr17:43158907-43159162(+)$1	255	98	137	12.4992

#otherMatches

#Seq PSSM
GGAAUUUGAGGGGAAGACUUUAGUGUCAGUCACCAAAGA	chr14:102549277-102549534(-)$1	257	10	49	15.1765
CAAAGAUCgaggcggugcagaaagugaacaaggcuggga	chr19:4499428-4499668(+)$1	240	141	180	12.6955
CUGCUUUUGACGAAUAUUGUAACAAAAAUCAGUUUCUGG	chr16:89350383-89350616(-)$1	233	101	140	15.7723
GCCUGGAACCUGGCUCGUGCUGUGACCAGAAGGGAAAGG	chr7:102065468-102065714(+)$1	246	110	149	14.1753
UUUGCUCAUUUUAGGCAUCGUUAAAGAAUCUGGAGUGAA	chr2:61408385-61408614(+)$1	229	55	94	15.0688
GCUCUGGGGCCCCUGGAAAAUAGCUUCCUGGACGGCAGC	chr16:89346589-89346878(-)$1	289	208	247	11.7457
AGAAGAGGCAGAAAAACUUCAGCAAGAGUUCGGCUACUG	chr8:144407450-144407783(-)$1	333	88	127	13.3357
AUGAGAGAUUAUGGCACAUCUGGGGCACCUGGUCUAUCA	chr1:39790263-39790495(+)$1	232	154	193	13.4750
GGCAGACUCGCUGCUUCUGACAGCCAUGAAGACAGACGG	chr17:17722628-17722851(-)$1	223	109	148	12.9412
UUUGCUCAUUUUAGGCAUCGUUAAAGAAUCUGGAGUGAA	chr2:61408362-61408585(+)$1	223	78	117	15.0688
AAGGACUCAGAAUUGAACCAGAAGCGGCCUCAGUACAUC	chrX:53439048-53439296(-)$1	248	97	136	10.8858
AUCAGUUUUUUGUGCUGCGUCUUCCAGGAAAAGCUGGGG	chr22:50018193-50018424(-)$1	231	68	107	11.1245
GCGCGUGCUCGUCGGGCGCGCGUGCUCGUCGGGCGCGCG	chr8:38854436-38854722(+)$1	286	4	43	13.1963
GGCGGGACCCCAUGUACAACGAGGUGAGAGCUUGGGGCU	chr7:933243-933538(+)$1	295	186	225	14.0216
CACUUGGGGCUCUUCUUGGGGCUGCCCAGAAGCUCCAGG	chrX:153178677-153178968(-)$1	291	183	222	12.7691
CCUACAGGGGAGUCCAUGAGGUUAACCCCUUACUUCCCA	chr19:55649315-55649543(-)$1	228	59	98	10.7409
GUGGGGAGGAGGUGAAGCUGCAGGGUCCCCUUCCUCUGC	chr11:6566343-6566620(+)$1	277	108	147	10.8489
GGCAGGCCGCUGGGGCCUGACCUGGCCGGGCUGGCCUGC	chr11:65820043-65820279(+)$1	236	33	72	11.3668
GGGCUUCGUGAAGACCUUUGAGAAAGAGCUCUCAGGAGA	chr19:1817133-1817391(-)$1	258	98	137	12.5351
CUGUUGGCUACUACUGGCUUCUCCUGGCUGUUAAAAGCA	chr2:131975720-131975982(+)$1	262	215	254	13.6166
GGUUCUGGCUUGAGAAGAAGGGGGGUUUGGCAUCUGGGU	chr2:232577052-232577316(+)$1	264	177	216	13.2817
AGAGUUCAUUGGAUGGCAAGAGUAUGGCACCUAAGAAAU	chr1:39776511-39776770(+)$1	259	209	248	13.5866
GGGCCUGGCUUCCUGCCGCGCGCCGCGGGGACGCCUCCG	chr7:5569349-5569639(-)$1	290	144	183	11.6338
AUGUAUGUGCCCCGUGUUUAAAGUGACUUGUGGAUUUGC	chr19:5612438-5612679(-)$1	241	44	83	13.3513
CAUGGAGGUCACCGAUGCUUGAACAUUCCUGCCUCCCUA	chr1:109780351-109780618(+)$1	267	137	176	12.1227
CUGCGUCUUAGGCUUCUCCACGGCGGUAAAGACCAGAAG	chr1:59249180-59249443(-)$1	263	115	154	12.8315
GGUAUUGUGGGAAGAACGGACAUGUGGAUCUUUCCAAGG	chr12:133252585-133252846(-)$1	261	196	235	13.7449
UGUAUUUUAUUACAUUUGACAGUGUCUCAAUAAUAAGAU	chr11:110150303-110150541(-)$1	238	141	180	13.6849
CUGUGCCUGCCACUCUGAGUACCGCUGACCGUGGCCAGG	chr9:139730328-139730563(+)$1	235	187	226	11.3997
CUCAAGCUCUGGAACCUGCAGAAGGCGGUCACGGCCAAG	chr19:47228694-47228956(-)$1	262	186	225	11.8179
AGAAAACAAUUGUUCUGGGUGAUUUCUAGAAUGGUUUUU	chr5:96108245-96108538(+)$1	293	163	202	13.6582
UUGCCUGUGAAUGCUGACCACACAGAAGAUGGGUGCCUC	chr7:6461254-6461493(-)$1	239	159	198	10.9047
ACGGGAGCUUCCCGGGAGCCGUUUGUGCCCGGGGUAACC	chrX:118986701-118986995(-)$1	294	28	67	13.3199
GGGGAGGGUCCUGGUUGCCGGCCCCGCCCGGUCCCUCCC	chr9:35689852-35690156(-)$1	304	161	200	12.8197
AGUGUUUGACCGGGAGAUCGCACAGAUGUUUUUAAACAU	chr22:22321872-22322109(-)$1	237	71	110	11.5733
CCACAUCAUCAUUCCCAGCUACGCUGCCUGGUUUGACUA	chr12:56572090-56572436(-)$1	346	204	243	11.5426
CAGCAGGAGGGGAGGUAGAAGAAGGUGCACCUCCACCCC	chr17:4575257-4575595(-)$1	338	209	248	12.1644
GUCAGUCGGGCAACCCUGUUAUGAGCACUGUUGCCUUCC	chr12:56565412-56565663(-)$1	251	108	147	11.6341
AUGUUGGCCGGAUUAAGCAGAAGAUGAAAGAAUUGGCCA	chr20:57242955-57243269(+)$1	314	97	136	17.0013
UUUGCUCAUUUUAGGCAUCGUUAAAGAAUCUGGAGUGAA	chr2:61408354-61408562(+)$1	208	86	125	15.0688
UGACUCCCCAAAGGACUUUGUCAGAAGCAACUGGUAGUG	chr7:100483919-100484154(+)$1	235	142	181	12.4735
CAGUGGUGUGCCCCCACGUCCUGAGGAAGCAGAUGAGAC	chr3:184040321-184040577(+)$1	256	81	120	12.4460
GUGUCAGCAGCCUGAGUGUGGGAAAUGUAAAGCCUGCAA	chr19:10262377-10262623(-)$1	246	102	141	11.7352
gaugaUGAUGAUGAAUAAGUUGGUUCUAGCGCAGUUUUU	chr13:31035388-31035658(-)$1	270	147	186	11.5384
AGGCAUCCUAAAUGAUAACAUAAAAGAUUACGUUGGGAA	chr7:77378746-77379040(+)$1	294	169	208	13.3652
CUACCUGGCCAUGGAACUGUGAGGAGGGCCUGGGCAGGC	chrX:152937408-152937655(-)$1	247	57	96	13.7705
GAGAAUGUAGGAGGGCAGAGGCUUUUCCUGACACCCCUG	chr11:118919443-118919682(-)$1	239	30	69	10.5284
CUGCUAGGAUGGAUGUGGCGGCAGGCAAUAGACAGACUU	chr3:128211706-128211984(+)$1	278	234	273	11.9662
GUGCCCGGGGUGUGCCGCCUCCCCGUCCUGCGCCCCAUC	chr14:105929467-105929693(+)$1	226	148	187	14.8527
AGGCCCCUGCUCCGGCCGCCGCUUGCAGACCGCGGGCGC	chrX:152953489-152953715(+)$1	226	104	143	13.2849
UGUUUGAACCGGGCGGAGGCGGGGCUGGCGCCCGGUUGG	chr7:5569467-5569694(-)$1	227	150	189	14.5483
UGCACCCUGAGACUCAGCCCCACAGGCUUUUCCUCUGGA	chr7:72988594-72988890(-)$1	296	202	241	12.4259
UUACAGUGGUUUGAGUCCAGCCAAUGACACUGGAGCCaa	chr17:43158907-43159162(+)$1	255	98	137	12.4992

#DB
((..(((...((((.(((......)))..)).))...))	chr14:102549277-102549534(-)$1	1	10	49	15.1765
.....(((..(((.((.((.....)).))...)))..))	chr19:4499428-4499668(+)$1	1	141	180	12.6955
((.(....(((..((.((......)).))..)))...).	chr16:89350383-89350616(-)$1	1	101	140	15.7723
((((....(((..((.((......)).))..)))..)))	chr7:102065468-102065714(+)$1	1	110	149	14.1753
(.(((((((((((((..((......)).))))))))).)	chr2:61408385-61408614(+)$1	1	55	94	15.0688
(((.....(((((.((((......)))).))..))))))	chr16:89346589-89346878(-)$1	1	208	247	11.7457
(..((.(((.((...((((......)))))).))).)).	chr8:144407450-144407783(-)$1	1	88	127	13.3357
.(((.((((((.(((.(......))).).)))))).)))	chr1:39790263-39790495(+)$1	1	154	193	13.4750
(((...(.(((((((((((.....)).)))).))).)))	chr17:17722628-17722851(-)$1	1	109	148	12.9412
(.(((((((((((((..((......)).))))))))).)	chr2:61408362-61408585(+)$1	1	78	117	15.0688
).((.((..(((((((.((......))..)))))...))	chrX:53439048-53439296(-)$1	1	97	136	10.8858
..(((((((((.((..........)).))))))))))))	chr22:50018193-50018424(-)$1	1	68	107	11.1245
(((((((((((.(((((......))))).))))))))))	chr8:38854436-38854722(+)$1	1	4	43	13.1963
..(.((.(((((.((.((......))...)).)))))))	chr7:933243-933538(+)$1	1	186	225	14.0216
(.(((((((((..(((.(((....)))))))))))))))	chrX:153178677-153178968(-)$1	1	183	222	12.7691
(((...(((((((....((((......))))))))))).	chr19:55649315-55649543(-)$1	1	59	98	10.7409
(((.((((((((.(..(((....)))..))))))))).)	chr11:6566343-6566620(+)$1	1	108	147	10.8489
(((((((((((..((((......)))).))).)))))))	chr11:65820043-65820279(+)$1	1	33	72	11.3668
))))(((.(((.((.((((.....)))).))))).))).	chr19:1817133-1817391(-)$1	1	98	137	12.5351
(((((....((....((((......))))))....))))	chr2:131975720-131975982(+)$1	1	215	254	13.6166
((....((((((((..(((......)))..).)).))))	chr2:232577052-232577316(+)$1	1	177	216	13.2817
(...(((.((((.((.((......)).)).))))))).)	chr1:39776511-39776770(+)$1	1	209	248	13.5866
((....(((.(((..(((((...)))))))).)))))))	chr7:5569349-5569639(-)$1	1	144	183	11.6338
(.(((.((.((.((.(((......))).)).)))).)))	chr19:5612438-5612679(-)$1	1	44	83	13.3513
...(((((.((..((((......))))..)))))))...	chr1:109780351-109780618(+)$1	1	137	176	12.1227
(..((((((.(((((..((.....))..))).))..)))	chr1:59249180-59249443(-)$1	1	115	154	12.8315
(((....((((((((.((......))..))))))))..)	chr12:133252585-133252846(-)$1	1	196	235	13.7449
((((((((((((.....(((...)))....)))))))))	chr11:110150303-110150541(-)$1	1	141	180	13.6849
))(((((((((((..(.(((...))).)..)))).))))	chr9:139730328-139730563(+)$1	1	187	226	11.3997
(((..((((((..(((.((.....)))))..))).....	chr19:47228694-47228956(-)$1	1	186	225	11.8179
((((....(((((((((((.....)))))))))))))))	chr5:96108245-96108538(+)$1	1	163	202	13.6582
(((((((.(...((...((((......).)))..))).)	chr7:6461254-6461493(-)$1	1	159	198	10.9047
(((((....(((((((.((.....)).)))))))....)	chrX:118986701-118986995(-)$1	1	28	67	13.3199
(((.((((.((.(((.(......).))).)).)))))))	chr9:35689852-35690156(-)$1	1	161	200	12.8197
.((((((((...(((.(((.....))).)))))))))))	chr22:22321872-22322109(-)$1	1	71	110	11.5733
(((.(((.(((..((((((...))))...))..)))...	chr12:56572090-56572436(-)$1	1	204	243	11.5426
(((..((.((((((((..(......)..)))))).)).)	chr17:4575257-4575595(-)$1	1	209	248	12.1644
(((((..(((((((..((((...))))..)))))))..)	chr12:56565412-56565663(-)$1	1	108	147	11.6341
(.(((((((((.((...((.....))...)).)))))))	chr20:57242955-57243269(+)$1	1	97	136	17.0013
(.(((((((((((((..((......)).))))))))).)	chr2:61408354-61408562(+)$1	1	86	125	15.0688
..(((..(((...(.((((....)))))...))).))).	chr7:100483919-100484154(+)$1	1	142	181	12.4735
...(.((.(((..((.........))..))).)).)..)	chr3:184040321-184040577(+)$1	1	81	120	12.4460
(((((.((((.((...(((.....)))...)).))))..	chr19:10262377-10262623(-)$1	1	102	141	11.7352
(((..((.....((((......))))...))..))))))	chr13:31035388-31035658(-)$1	1	147	186	11.5384
(..(.((((((.((.((((......).))))))))))).	chr7:77378746-77379040(+)$1	1	169	208	13.3652
((.((((.(((.((..((......))..))))).)))).	chrX:152937408-152937655(-)$1	1	57	96	13.7705
(.(((.(((((.((....(((.....)))....))))).	chr11:118919443-118919682(-)$1	1	30	69	10.5284
)((((((..((..(((.((.....)).)))..))..)).	chr3:128211706-128211984(+)$1	1	234	273	11.9662
(.(...((((((((..((......))..))))))))...	chr14:105929467-105929693(+)$1	1	148	187	14.8527
((((.(((((...(((.((.....)).).))))))).))	chrX:152953489-152953715(+)$1	1	104	143	13.2849
(.(((.(((((((((..(((...)))..))))))))).)	chr7:5569467-5569694(-)$1	1	150	189	14.5483
((.((((.(((....((((.....))))....))).)).	chr7:72988594-72988890(-)$1	1	202	241	12.4259
((....((((((.(((.((.....))..))).)))))).	chr17:43158907-43159162(+)$1	1	98	137	12.4992

#PSSM
d : 0.16	c : 0.13	e : 0.13	b : 0.13	g : 0.09	! : 0.07	f : 0.05	h : 0.05	# : 0.05	= : 0.03	$ : 0.01	i : 0.01	F : 0.01	
[ : 0.16	d : 0.15	c : 0.13	! : 0.11	e : 0.09	g : 0.09	h : 0.05	= : 0.03	# : 0.03	$ : 0.01	: : 0.01	" : 0.01	i : 0.01	f : 0.01	b : 0.01	
c : 0.18	d : 0.16	# : 0.09	! : 0.07	i : 0.07	[ : 0.05	= : 0.05	h : 0.05	g : 0.05	e : 0.05	a : 0.03	$ : 0.01	b : 0.01	" : 0.01	f : 0.01	
d : 0.11	c : 0.11	! : 0.07	" : 0.07	[ : 0.07	# : 0.07	e : 0.07	a : 0.05	b : 0.05	i : 0.05	h : 0.05	g : 0.05	$ : 0.03	= : 0.03	f : 0.03	
c : 0.15	# : 0.13	d : 0.11	[ : 0.09	e : 0.07	b : 0.05	" : 0.05	i : 0.05	h : 0.05	! : 0.05	$ : 0.03	= : 0.03	g : 0.03	f : 0.03	
# : 0.16	b : 0.13	c : 0.11	d : 0.09	[ : 0.09	f : 0.05	" : 0.05	i : 0.05	h : 0.05	e : 0.05	= : 0.03	! : 0.03	$ : 0.01	g : 0.01	
c : 0.15	b : 0.15	i : 0.13	# : 0.11	f : 0.07	h : 0.07	e : 0.07	d : 0.05	= : 0.03	g : 0.03	! : 0.03	$ : 0.01	a : 0.01	[ : 0.01	
[ : 0.16	i : 0.13	c : 0.09	# : 0.09	h : 0.09	f : 0.07	e : 0.07	g : 0.05	$ : 0.03	! : 0.03	= : 0.03	b : 0.03	d : 0.03	" : 0.01	
c : 0.26	i : 0.13	f : 0.07	h : 0.07	! : 0.05	= : 0.05	e : 0.05	g : 0.05	[ : 0.05	b : 0.03	# : 0.03	d : 0.03	" : 0.01	a : 0.01	$ : 0.01	
c : 0.22	b : 0.15	i : 0.13	" : 0.05	[ : 0.05	f : 0.05	= : 0.05	e : 0.05	g : 0.05	h : 0.05	d : 0.05	! : 0.01	$ : 0.01	
c : 0.26	b : 0.16	i : 0.13	f : 0.07	" : 0.07	= : 0.05	g : 0.05	h : 0.05	e : 0.03	d : 0.03	[ : 0.01	$ : 0.01	
[ : 0.18	! : 0.16	b : 0.11	i : 0.07	" : 0.07	c : 0.05	g : 0.05	h : 0.05	e : 0.03	# : 0.03	d : 0.03	= : 0.03	f : 0.03	$ : 0.01	
b : 0.22	! : 0.16	c : 0.11	i : 0.07	[ : 0.07	" : 0.05	g : 0.05	e : 0.03	# : 0.03	h : 0.03	d : 0.03	a : 0.01	$ : 0.01	= : 0.01	f : 0.01	
b : 0.32	c : 0.13	i : 0.07	d : 0.07	# : 0.05	a : 0.05	[ : 0.03	" : 0.03	e : 0.03	! : 0.03	h : 0.03	g : 0.03	$ : 0.01	= : 0.01	f : 0.01	
b : 0.16	c : 0.13	! : 0.13	[ : 0.09	d : 0.09	i : 0.07	" : 0.07	# : 0.07	e : 0.03	s : 0.01	h : 0.01	$ : 0.01	= : 0.01	g : 0.01	f : 0.01	
d : 0.20	! : 0.18	[ : 0.15	c : 0.13	e : 0.05	" : 0.05	# : 0.03	a : 0.03	b : 0.01	s : 0.01	$ : 0.01	= : 0.01	g : 0.01	f : 0.01	r : 0.01	
d : 0.20	[ : 0.16	c : 0.13	b : 0.13	! : 0.11	a : 0.03	e : 0.03	# : 0.03	" : 0.03	s : 0.01	$ : 0.01	= : 0.01	r : 0.01	o : 0.01	
b : 0.37	c : 0.22	d : 0.16	o : 0.11	s : 0.01	e : 0.01	= : 0.01	! : 0.01	r : 0.01	# : 0.01	
o : 0.30	b : 0.24	c : 0.18	d : 0.15	a : 0.03	s : 0.01	e : 0.01	= : 0.01	r : 0.01	
o : 0.47	n : 0.26	c : 0.11	d : 0.03	m : 0.03	s : 0.01	e : 0.01	l : 0.01	r : 0.01	
o : 0.47	n : 0.26	l : 0.11	m : 0.05	s : 0.01	d : 0.01	a : 0.01	r : 0.01	c : 0.01	
o : 0.50	n : 0.28	l : 0.11	m : 0.05	s : 0.01	r : 0.01	
o : 0.49	n : 0.28	l : 0.09	m : 0.05	d : 0.03	s : 0.01	r : 0.01	
o : 0.39	n : 0.28	d : 0.11	c : 0.07	a : 0.03	e : 0.03	s : 0.01	m : 0.01	r : 0.01	
b : 0.35	o : 0.20	c : 0.16	d : 0.16	e : 0.03	= : 0.01	] : 0.01	n : 0.01	
b : 0.43	c : 0.20	d : 0.20	e : 0.03	o : 0.03	a : 0.03	= : 0.01	n : 0.01	
] : 0.22	c : 0.16	d : 0.16	2 : 0.16	b : 0.07	3 : 0.07	e : 0.03	o : 0.03	4 : 0.01	= : 0.01	
2 : 0.24	d : 0.13	c : 0.13	] : 0.11	a : 0.09	3 : 0.09	b : 0.07	e : 0.03	i : 0.01	4 : 0.01	= : 0.01	g : 0.01	
c : 0.20	] : 0.13	2 : 0.11	b : 0.11	3 : 0.11	i : 0.09	d : 0.07	h : 0.03	4 : 0.03	a : 0.01	= : 0.01	g : 0.01	f : 0.01	
b : 0.26	c : 0.18	2 : 0.09	i : 0.09	3 : 0.05	h : 0.05	4 : 0.05	f : 0.03	d : 0.03	= : 0.03	g : 0.03	e : 0.01	] : 0.01	
b : 0.26	c : 0.15	i : 0.11	2 : 0.07	d : 0.07	= : 0.05	h : 0.05	3 : 0.03	f : 0.03	g : 0.03	4 : 0.03	e : 0.01	a : 0.01	] : 0.01	
] : 0.22	c : 0.13	i : 0.11	2 : 0.07	h : 0.07	e : 0.05	= : 0.05	g : 0.05	4 : 0.05	b : 0.05	f : 0.03	d : 0.03	3 : 0.01	
c : 0.20	i : 0.13	b : 0.11	h : 0.09	2 : 0.07	f : 0.07	e : 0.07	= : 0.05	g : 0.05	d : 0.05	4 : 0.03	] : 0.01	
c : 0.22	b : 0.13	i : 0.13	h : 0.09	f : 0.07	e : 0.07	= : 0.07	d : 0.07	g : 0.05	4 : 0.01	2 : 0.01	] : 0.01	
c : 0.15	i : 0.13	] : 0.11	h : 0.09	= : 0.07	3 : 0.05	2 : 0.05	f : 0.05	e : 0.05	b : 0.05	d : 0.05	g : 0.03	4 : 0.03	6 : 0.01	
i : 0.13	c : 0.11	h : 0.11	] : 0.09	g : 0.09	2 : 0.07	e : 0.07	3 : 0.05	= : 0.05	d : 0.05	b : 0.03	f : 0.03	6 : 0.01	4 : 0.01	a : 0.01	
i : 0.13	c : 0.11	3 : 0.09	b : 0.09	g : 0.09	2 : 0.07	d : 0.07	h : 0.07	= : 0.05	f : 0.05	e : 0.03	6 : 0.01	a : 0.01	4 : 0.01	8 : 0.01	] : 0.01	
c : 0.15	] : 0.15	b : 0.11	g : 0.09	d : 0.05	= : 0.05	i : 0.05	h : 0.05	3 : 0.05	f : 0.05	2 : 0.05	a : 0.01	e : 0.01	6 : 0.01	4 : 0.01	8 : 0.01	
c : 0.18	d : 0.09	] : 0.07	3 : 0.07	g : 0.07	e : 0.07	b : 0.05	= : 0.05	i : 0.05	5 : 0.05	h : 0.05	a : 0.01	: : 0.01	f : 0.01	6 : 0.01	8 : 0.01	4 : 0.01	2 : 0.01	

#score	683.1393576956071
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_CDS_m2_run2.txt

#BEAR
======bb[ddddoooooodddd333bb333=====	chr16:29708420-29708651(+)$1	231	113	149	15.2485
ccc!!a!!a[cccooooooccc]a22a22cccdddd	chr15:64448218-64448444(-)$1	226	130	166	15.0089
ddd!!eeeee[cccnnnnnccc]eeeee22dddd]=	chr1:46654491-46654754(-)$1	263	37	73	12.6276
cc[a[bb"""ddddmmmmdddd22bb]accc=====	chr19:42365080-42365287(+)$1	207	42	78	12.4815
eeee[a$$$$$cccnnnnnccc55555a]eeeeebb	chr1:161192686-161192936(-)$1	250	185	221	12.6388
dd[ccc[cccddddnnnnndddd333ccc22ccc]d	chr16:85834731-85834990(+)$1	259	83	119	15.2631
!eeeeea"""ccc[ammmma]ccc333a]eeeee22	chr16:88714376-88714623(-)$1	247	49	85	12.9222
g####bb####ddddmmmmdddd22bb]ggggggg5	chr11:116703455-116703709(+)$1	254	117	153	11.8140
=======####cccnnnnnccc333==========]	chr15:64448138-64448366(-)$1	228	7	43	19.2748
=======[ccc[cccmmmmccc]ccc]=========	chr17:6917537-6917907(+)$1	370	316	352	13.4910
[cccggggggg[bboooooobbggggggg333ccc]	chr6:31830293-31830579(-)$1	286	29	65	11.6497
[bb!!accc!!cccmmmmcccccc]a22bb]ggggg	chr9:117094048-117094309(+)$1	261	45	81	12.1204
e[a[eeeee!!cccnnnnnccc666666eeeee]a]	chr14:103986155-103986475(-)$1	320	67	103	13.3501
ggg"""ccc"""bbnnnnnbb4444ccc4444gggg	chr19:49464019-49464271(+)$1	252	6	42	15.7306
iiiiiiiia!!cccooooooccc22a]iiiiiiiii	chr10:102744484-102744780(+)$1	296	199	235	15.9607
[a[addddbb[cccnnnnnccc]bb]dddd]a]a]b	chr20:62664100-62664385(+)$1	285	73	109	12.7431
!a[a[ccceeeeeannnnna]eeeee4444ccc]a]	chr9:90345917-90346231(+)$1	314	22	58	13.5617
ggggffffff[cccnnnnnccc22ffffff]ggggg	chr9:140136954-140137218(+)$1	264	158	194	13.2815
iiiiiiiii!!cccnnnnnccc666666iiiiiiii	chr20:60884368-60884599(-)$1	231	78	114	15.3822
ggggg!!a[eeeeennnnneeeee22a4444ggggg	chr19:5691321-5691544(+)$1	223	21	57	14.3804
dddd[bb####cccmmmmccc4444bbdddd333dd	chr20:60884943-60885191(-)$1	248	81	117	12.0876
hhhhhhh####cccnnnnnccc4444hhhhhhhh22	chr16:2292961-2293290(-)$1	329	282	318	14.5877
=======bb[bboooooobb]bb4444=========	chr1:2125405-2125656(-)$1	251	137	173	12.6659
ddeeeeea"""cccooooooccc4444a]eeeee88	chr8:27457194-27457428(-)$1	234	78	114	13.9446
c!!eeeee"""cccnnnnnccc333eeeee22ccc:	chr15:44085886-44086150(+)$1	264	120	156	14.9252
ccc"""ccc[aooooooa]ccc333ccc22bb]bb]	chr19:1244221-1244513(+)$1	292	157	193	12.5196
eeee!!a[ccccccooooooccc]ccc]a333eeee	chr1:161192616-161192864(-)$1	248	32	68	14.1550
ee[bb%%%%%%cccnnnnnccc4444bb]eeeee]c	chr20:25206971-25207227(+)$1	256	215	251	12.8041
==="""ddddddddnnnnndddd22dddd]======	chr1:46775856-46776089(+)$1	233	164	200	14.6519
[a[ccc!!ffffffnnnnnffffff22ccc]adddd	chr16:2011685-2011939(+)$1	254	130	166	12.1688
iiiiii!!ccc[aooooooa]ccc22iiiiiiiii]	chr7:100882829-100883089(-)$1	260	133	169	14.7985
eeee!!a[ccccccooooooccc]ccc]a333eeee	chr1:161192664-161192886(-)$1	222	54	90	14.1550
"""ccc"""ddddoooooodddd333cccccc====	chr20:30156879-30157176(+)$1	297	39	75	15.8721
gg"""ccc"""ddddllldddd4444ccc333gggg	chr17:36918562-36918810(+)$1	248	153	189	15.0661
====bb"""eeeeennnnneeeee333bb333====	chr4:74321306-74321515(+)$1	209	49	85	15.6082
$$bb[a####ddddnnnnndddd4444a]bb4444f	chr14:23033906-23034137(-)$1	231	147	183	15.3870
ccc"""a[ccc[cccmmmmccc]ccc]a4444ccc]	chr3:49159039-49159308(-)$1	269	165	201	13.3419
iii$$$$$dddd[annnnna]dddd333iiiiiiii	chr17:79974719-79974968(+)$1	249	49	85	14.5013
i!!ccc[bb[ddddnnnnndddd22bb]ccc]iiii	chr17:27076847-27077163(+)$1	316	107	143	14.9906
cc"""ccc####aooooooa333ccc333ccceeee	chr11:46403757-46403989(+)$1	232	66	102	14.6079
b"""bb!!a[ddddmmmmdddd]a333bb]bb====	chr17:39679986-39680298(-)$1	312	109	145	12.4720
c[dddd"""ccc[annnnna]ccc333dddd]ccc:	chr16:88697880-88698187(+)$1	307	54	90	14.5223
a[ccc####eeeeennnnneeeeeccc]a]ffffff	chr20:34214094-34214340(-)$1	246	152	188	12.9631
ee!!a[ccc[cccooooooccc]ccc]a22eeeee8	chr17:34171744-34172137(+)$1	393	222	258	13.5903
g!!ccc!!ccccccnnnnnccc]ccc22ccc88888	chr12:9220684-9220899(-)$1	215	126	162	13.6945
bdddd####eeeeennnnneeeee333dddd333bb	chr19:1440000-1440278(+)$1	278	75	111	13.2485
!ccc[dddd!!cccooooooccc22ddddcccccc2	chr3:52842569-52842809(+)$1	240	81	117	13.5693
:cccccc####cccooooooccc4444ccc]ccc::	chr2:219679181-219679457(+)$1	276	84	120	13.6365
d[ggggggg[ddddnnnnndddd333gggggggddd	chr9:116822404-116822638(-)$1	234	121	157	14.8167
:ccc"""ccc[cccnnnnnccc]ccc]cccffffff	chr17:79974819-79975090(+)$1	271	51	87	14.0957
d[ccc[bb!!acccmmmmccc]a22bb333ccc]dd	chr19:35758453-35758716(+)$1	263	122	158	12.3323
g!!ccc!!ccccccnnnnnccc]ccc22ccc88888	chr12:9220678-9220884(-)$1	206	111	147	13.6945
gg[ccc!!bb"""ccclllccc22bb]cccgggggg	chr6:33258012-33258295(+)$1	283	140	176	12.3103
cc!!dddd[ddddoooooodddd22dddd22ccc33	chr3:48445724-48446003(-)$1	279	122	158	12.5807
iiiii!!bb!!cccnnnnnccc333bbiiiiiiiii	chr7:5340127-5340386(+)$1	259	84	120	17.3339

#otherMatches

#Seq PSSM
GGCCACCGUGCUGAAGGCCCAGUUCCCGAGUGUGGC	chr16:29708420-29708651(+)$1	231	113	149	15.2485
ACAGACAGCCGGGAUAAACCCCUGAAGGAUGUGAUC	chr15:64448218-64448444(-)$1	226	130	166	15.0089
AGUACCUGGGAAUCAUUACGAUCCCUAGCAGCUCAU	chr1:46654491-46654754(-)$1	263	37	73	12.6276
AUAUGGGGUAGUUUGUGGAGAUGACUGAAUCGUGCU	chr19:42365080-42365287(+)$1	207	42	78	12.4815
CUGAUGGAGAAGGUCAAGAGCCCAGAGCUUCAGGCC	chr1:161192686-161192936(-)$1	250	185	221	12.6388
UUGGCUACCAGGGUAUUUAGCCUAGUUGGCAAGCGA	chr16:85834731-85834990(+)$1	259	83	119	15.2631
CCAGGCCCCCGGGACGGGAGCCCCACAGUGCCUGAC	chr16:88714376-88714623(-)$1	247	49	85	12.9222
CAGACCAACUUCAGCCGUGGCUGCCUGAGACCUCAA	chr11:116703455-116703709(+)$1	254	117	153	11.8140
ACCUUUCUUUUCCAGGAGGUGGUGCGGAAGGUGGAG	chr15:64448138-64448366(-)$1	228	7	43	19.2748
CCUGUGUCUGUGCUUGAGUGGGGGCGAGCACGGGGC	chr17:6917537-6917907(+)$1	370	316	352	13.4910
ACUGGGGAGCGACCCAGCACGGCGCUCCCGGACAGA	chr6:31830293-31830579(-)$1	286	29	65	11.6497
CUCCCCCUGCAGCUGACAAGCCAGAGACGACCAAGG	chr9:117094048-117094309(+)$1	261	45	81	12.1204
UCCUCCGCCCUGACUUGCUGUCUCCCCAGGCGGUGU	chr14:103986155-103986475(-)$1	320	67	103	13.3501
GGACAAGGUUCAGUCCCUAACGCCCACUCCACUCCC	chr19:49464019-49464271(+)$1	252	6	42	15.7306
CACAUGUGGUAACACACACCUGUAUCACACAUGUGC	chr10:102744484-102744780(+)$1	296	199	235	15.9607
GUGCCCUGUGGUCCCCCCAGGAGCAGCAGGAGGAGG	chr20:62664100-62664385(+)$1	285	73	109	12.7431
GCAUGGGUGGCUACGUAAAGAUGGCCAAAGACCGGA	chr9:90345917-90346231(+)$1	314	22	58	13.5617
GUACCCUCCUCAUCAGCAAGAUCCGGGAGGAGUACC	chr9:140136954-140137218(+)$1	264	158	194	13.2815
CGUGCAGCCCUGGCCCCCCGCCUACUGCGGCUGCAU	chr20:60884368-60884599(-)$1	231	78	114	15.3822
ACACCAAGUUCGUGCGGGACAUGAUUCGGGAGGUGU	chr19:5691321-5691544(+)$1	223	21	57	14.3804
GGGGAGUUCUCCACGUCAGUGACCCGCCCCUCAGUG	chr20:60884943-60885191(-)$1	248	81	117	12.0876
GGAGACCAGAAGGUUCUCCACCCAAAGGUUUUCUGU	chr16:2292961-2293290(-)$1	329	282	318	14.5877
UCUGGGCCGAGCUACUGCGCACGGUGAGCCCGGAGC	chr1:2125405-2125656(-)$1	251	137	173	12.6659
CGGCUGGCAAACCUCACGCAAGGCGAAGACCAGUAC	chr8:27457194-27457428(-)$1	234	78	114	13.9446
CCUGUGUGCCUGGAGCCAGUCCCACCACGCUCGCGU	chr15:44085886-44086150(+)$1	264	120	156	14.9252
GGCAGAGAUCCAGAUCCGAAUCGAGGCCAACGAGGC	chr19:1244221-1244513(+)$1	292	157	193	12.5196
GUUCGGAGACAGGCAAAGGAGCCAUGUGUGGAGAGC	chr1:161192616-161192864(-)$1	248	32	68	14.1550
CUGACCCCACCUCCUCCAUGGACAGUGUGAGCCCCG	chr20:25206971-25207227(+)$1	256	215	251	12.8041
UUGCAAUGGUCAGGGAAGACUUGGUGCCAACAAUCU	chr1:46775856-46776089(+)$1	233	164	200	14.6519
ACAGUUCUGCCAGGAAGUGCCUGGCCAAACAGAGGC	chr16:2011685-2011939(+)$1	254	130	166	12.1688
CGUCCUUCAGCCCCAUCAUGUGCUUUGGGAUGAGUG	chr7:100882829-100883089(-)$1	260	133	169	14.7985
GUUCGGAGACAGGCAAAGGAGCCAUGUGUGGAGAGC	chr1:161192664-161192886(-)$1	222	54	90	14.1550
UCAGUUAUGAGGAGUCAAAUCCUAAGGAUCCAGCGG	chr20:30156879-30157176(+)$1	297	39	75	15.8721
ACCGGGAUGCAGUGUCAGGCAUGGGAGUCAUUGUCC	chr17:36918562-36918810(+)$1	248	153	189	15.0661
AAGACAAAACGAGUCUUUCAUUCGGUGUGAACUUUU	chr4:74321306-74321515(+)$1	209	49	85	15.6082
AUUGGACACAUGGAUUUUCUUCAGAUUUGCACUUAC	chr14:23033906-23034137(-)$1	231	147	183	15.3870
CAGGGUCGUGCCCAGGAGGCUGAGCAGGUGGGUUGA	chr3:49159039-49159308(-)$1	269	165	201	13.3419
CACCUCCCGUGGCGGCACUCACCACUCUGUGUCUUC	chr17:79974719-79974968(+)$1	249	49	85	14.5013
GGGUAGUUCAAAGAGUCUGUCUUGAGAUCUGAUUUU	chr17:27076847-27077163(+)$1	316	107	143	14.9906
CUGUUCCUCGCGCGUUGUAGAUAAGGUGAAGAAGGG	chr11:46403757-46403989(+)$1	232	66	102	14.6079
CAUAUCCAGGCGCUGAUCAGCGGUAUUGAAGCCCAG	chr17:39679986-39680298(-)$1	312	109	145	12.4720
UAGUGACCAGCACGGUUCUCAUGUAAAUUACAAGCC	chr16:88697880-88698187(+)$1	307	54	90	14.5223
AUCCUGCACAGGCCCCCCAGGCCUAGGUUCCCUUGG	chr20:34214094-34214340(-)$1	246	152	188	12.9631
GUGGCGGCUAUGGAGGAGACCGAGGUGGGGGCUACG	chr17:34171744-34172137(+)$1	393	222	258	13.5903
CCACUCACACUCCUCCAAAAGGCAGUCAGAGCUCCU	chr12:9220684-9220899(-)$1	215	126	162	13.6945
CGGCGGAAGCAGCACUCCCUGCUGAAGCGCCUGCGC	chr19:1440000-1440278(+)$1	278	75	111	13.2485
UGAUUGAUGGUGUCCACACUGACUACAUUGUCCCCA	chr3:52842569-52842809(+)$1	240	81	117	13.5693
AGACCCAGUUUGUGUUCUGCCACUAUGUGGUGUCCC	chr2:219679181-219679457(+)$1	276	84	120	13.6365
AACUGGCCGGUCUGCAAGUCAGAGGAUGGCCAGUGU	chr9:116822404-116822638(-)$1	234	121	157	14.8167
ACCUAAGUCUGAGCCAGCUGCUGAGGAGGGGGCGCU	chr17:79974819-79975090(+)$1	271	51	87	14.0957
CCGCGCCGCCCCCGUACUCGGAGACCGACUCGCAGG	chr19:35758453-35758716(+)$1	263	122	158	12.3323
CCACUCACACUCCUCCAAAAGGCAGUCAGAGCUCCU	chr12:9220678-9220884(-)$1	206	111	147	13.6945
GGUGCUAGUCAAACAGGAGCUGGGGGAGGCUCGGGC	chr6:33258012-33258295(+)$1	283	140	176	12.3103
CCACGGCCUGCUGUUGCUUCAGCCUGGCCUGGGCAG	chr3:48445724-48446003(-)$1	279	122	158	12.5807
GGCAUCAGCAACGGCUACUUCGGCAGCGUGCCCAUG	chr7:5340127-5340386(+)$1	259	84	120	17.3339

#DB
((((((((.((((......))))...))...)))))	chr16:29708420-29708651(+)$1	1	113	149	15.2485
(((..(..(.(((......))).)..)..)))((((	chr15:64448218-64448444(-)$1	1	130	166	15.0089
(((..(((((.(((.....))).)))))..)))).)	chr1:46654491-46654754(-)$1	1	37	73	12.6276
((.(.((...((((....))))..)).)))))))))	chr19:42365080-42365287(+)$1	1	42	78	12.4815
((((.(.....(((.....))).....).)))))))	chr1:161192686-161192936(-)$1	1	185	221	12.6388
((.(((.(((((((.....))))...)))..))).)	chr16:85834731-85834990(+)$1	1	83	119	15.2631
.((((((...(((.(....).)))...).)))))..	chr16:88714376-88714623(-)$1	1	49	85	12.9222
(....((....((((....))))..)).))))))).	chr11:116703455-116703709(+)$1	1	117	153	11.8140
(((((((....(((.....)))...)))))))))).	chr15:64448138-64448366(-)$1	1	7	43	19.2748
(((((((.(((.(((....))).))).)))))))))	chr17:6917537-6917907(+)$1	1	316	352	13.4910
.((((((((((.((......)))))))))...))).	chr6:31830293-31830579(-)$1	1	29	65	11.6497
.((..((((..(((....)))))).)..)).)))))	chr9:117094048-117094309(+)$1	1	45	81	12.1204
(.(.(((((..(((.....)))......))))).).	chr14:103986155-103986475(-)$1	1	67	103	13.3501
(((...(((...((.....))....)))....))))	chr19:49464019-49464271(+)$1	1	6	42	15.7306
(((((((((..(((......)))..).)))))))))	chr10:102744484-102744780(+)$1	1	199	235	15.9607
.(.(((((((.(((.....))).)).)))).).).)	chr20:62664100-62664385(+)$1	1	73	109	12.7431
.(.(.(((((((((.....).)))))....))).).	chr9:90345917-90346231(+)$1	1	22	58	13.5617
((((((((((.(((.....)))..)))))).)))))	chr9:140136954-140137218(+)$1	1	158	194	13.2815
(((((((((..(((.....)))......))))))))	chr20:60884368-60884599(-)$1	1	78	114	15.3822
(((((..(.(((((.....)))))..)....)))))	chr19:5691321-5691544(+)$1	1	21	57	14.3804
((((.((....(((....)))....))))))...))	chr20:60884943-60885191(-)$1	1	81	117	12.0876
(((((((....(((.....)))....))))))))..	chr16:2292961-2293290(-)$1	1	282	318	14.5877
(((((((((.((......)).))....)))))))))	chr1:2125405-2125656(-)$1	1	137	173	12.6659
((((((((...(((......)))....).)))))..	chr8:27457194-27457428(-)$1	1	78	114	13.9446
(..(((((...(((.....)))...)))))..))).	chr15:44085886-44086150(+)$1	1	120	156	14.9252
(((...(((.(......).)))...)))..)).)).	chr19:1244221-1244513(+)$1	1	157	193	12.5196
((((..(.((((((......))).))).)...))))	chr1:161192616-161192864(-)$1	1	32	68	14.1550
((.((......(((.....)))....)).))))).)	chr20:25206971-25207227(+)$1	1	215	251	12.8041
(((...((((((((.....))))..)))).))))))	chr1:46775856-46776089(+)$1	1	164	200	14.6519
.(.(((..((((((.....))))))..))).)))))	chr16:2011685-2011939(+)$1	1	130	166	12.1688
((((((..(((.(......).)))..))))))))).	chr7:100882829-100883089(-)$1	1	133	169	14.7985
((((..(.((((((......))).))).)...))))	chr1:161192664-161192886(-)$1	1	54	90	14.1550
...(((...((((......))))...))))))))))	chr20:30156879-30157176(+)$1	1	39	75	15.8721
((...(((...((((...))))....)))...))))	chr17:36918562-36918810(+)$1	1	153	189	15.0661
((((((...(((((.....)))))...))...))))	chr4:74321306-74321515(+)$1	1	49	85	15.6082
..((.(....((((.....))))....).))....)	chr14:23033906-23034137(-)$1	1	147	183	15.3870
(((...(.(((.(((....))).))).)....))).	chr3:49159039-49159308(-)$1	1	165	201	13.3419
(((.....((((.(.....).))))...))))))))	chr17:79974719-79974968(+)$1	1	49	85	14.5013
(..(((.((.((((.....))))..)).))).))))	chr17:27076847-27077163(+)$1	1	107	143	14.9906
((...(((....(......)...)))...)))))))	chr11:46403757-46403989(+)$1	1	66	102	14.6079
(...((..(.((((....)))).)...)).))))))	chr17:39679986-39680298(-)$1	1	109	145	12.4720
(.((((...(((.(.....).)))...)))).))).	chr16:88697880-88698187(+)$1	1	54	90	14.5223
(.(((....(((((.....)))))))).).))))))	chr20:34214094-34214340(-)$1	1	152	188	12.9631
((..(.(((.(((......))).))).)..))))).	chr17:34171744-34172137(+)$1	1	222	258	13.5903
(..(((..((((((.....))).)))..))).....	chr12:9220684-9220899(-)$1	1	126	162	13.6945
(((((....(((((.....)))))...))))...))	chr19:1440000-1440278(+)$1	1	75	111	13.2485
.(((.((((..(((......)))..)))))))))).	chr3:52842569-52842809(+)$1	1	81	117	13.5693
.((((((....(((......)))....))).)))..	chr2:219679181-219679457(+)$1	1	84	120	13.6365
(.(((((((.((((.....))))...))))))))))	chr9:116822404-116822638(-)$1	1	121	157	14.8167
.(((...(((.(((.....))).))).)))((((((	chr17:79974819-79975090(+)$1	1	51	87	14.0957
(.(((.((..((((....))).)..))...))).))	chr19:35758453-35758716(+)$1	1	122	158	12.3323
(..(((..((((((.....))).)))..))).....	chr12:9220678-9220884(-)$1	1	111	147	13.6945
((.(((..((...(((...)))..)).)))))))))	chr6:33258012-33258295(+)$1	1	140	176	12.3103
((..((((.((((......))))..))))..)))..	chr3:48445724-48446003(-)$1	1	122	158	12.5807
(((((..((..(((.....)))...)))))))))))	chr7:5340127-5340386(+)$1	1	84	120	17.3339

#PSSM
c : 0.14	g : 0.14	= : 0.10	d : 0.10	e : 0.10	i : 0.10	[ : 0.07	! : 0.05	b : 0.03	: : 0.03	h : 0.01	" : 0.01	$ : 0.01	a : 0.01	
c : 0.18	= : 0.10	e : 0.10	d : 0.09	[ : 0.09	g : 0.09	i : 0.09	! : 0.07	a : 0.05	" : 0.03	# : 0.01	b : 0.01	h : 0.01	$ : 0.01	
c : 0.16	[ : 0.12	= : 0.10	! : 0.10	e : 0.09	i : 0.09	d : 0.07	g : 0.07	" : 0.07	b : 0.03	# : 0.01	a : 0.01	h : 0.01	
c : 0.23	" : 0.12	e : 0.10	= : 0.09	! : 0.09	i : 0.07	a : 0.05	g : 0.05	d : 0.05	b : 0.03	# : 0.01	[ : 0.01	h : 0.01	$ : 0.01	
c : 0.18	" : 0.12	[ : 0.10	! : 0.09	= : 0.07	e : 0.07	i : 0.07	d : 0.07	g : 0.05	b : 0.05	# : 0.01	f : 0.01	h : 0.01	$ : 0.01	a : 0.01	
c : 0.20	e : 0.09	b : 0.09	" : 0.09	= : 0.07	a : 0.07	d : 0.07	! : 0.07	i : 0.05	g : 0.03	# : 0.03	[ : 0.03	f : 0.01	h : 0.01	% : 0.01	$ : 0.01	
! : 0.16	c : 0.14	b : 0.09	e : 0.07	a : 0.07	d : 0.07	" : 0.07	= : 0.05	# : 0.05	$ : 0.03	[ : 0.03	g : 0.03	i : 0.03	f : 0.01	h : 0.01	% : 0.01	
c : 0.16	# : 0.14	! : 0.12	b : 0.09	" : 0.09	[ : 0.07	d : 0.07	e : 0.05	$ : 0.03	g : 0.03	i : 0.03	a : 0.03	f : 0.01	% : 0.01	
c : 0.23	# : 0.16	" : 0.14	b : 0.09	[ : 0.05	a : 0.05	e : 0.05	d : 0.05	g : 0.03	f : 0.03	$ : 0.01	i : 0.01	% : 0.01	! : 0.01	
c : 0.18	[ : 0.12	# : 0.12	! : 0.12	e : 0.10	" : 0.10	d : 0.09	b : 0.03	f : 0.03	$ : 0.01	g : 0.01	% : 0.01	
d : 0.20	c : 0.20	# : 0.10	! : 0.10	" : 0.09	e : 0.09	[ : 0.07	a : 0.03	$ : 0.01	g : 0.01	b : 0.01	% : 0.01	f : 0.01	
c : 0.49	d : 0.23	e : 0.09	[ : 0.07	" : 0.03	b : 0.01	o : 0.01	f : 0.01	# : 0.01	
c : 0.50	d : 0.21	e : 0.09	b : 0.03	o : 0.03	a : 0.03	[ : 0.03	f : 0.01	" : 0.01	
c : 0.47	o : 0.16	d : 0.16	e : 0.07	a : 0.05	b : 0.03	[ : 0.01	f : 0.01	
n : 0.50	o : 0.29	m : 0.09	c : 0.05	d : 0.03	a : 0.01	
n : 0.50	o : 0.29	m : 0.16	l : 0.01	c : 0.01	
n : 0.50	o : 0.29	m : 0.16	l : 0.03	
n : 0.50	o : 0.27	m : 0.16	l : 0.03	a : 0.01	
n : 0.50	o : 0.25	m : 0.07	d : 0.05	c : 0.05	b : 0.01	] : 0.01	l : 0.01	
c : 0.41	d : 0.21	o : 0.12	a : 0.10	e : 0.07	b : 0.03	f : 0.01	
c : 0.52	d : 0.21	] : 0.10	e : 0.07	b : 0.03	f : 0.01	3 : 0.01	
c : 0.54	d : 0.23	e : 0.09	b : 0.03	4 : 0.03	f : 0.01	3 : 0.01	] : 0.01	
d : 0.18	] : 0.18	c : 0.18	3 : 0.09	4 : 0.09	e : 0.09	2 : 0.05	6 : 0.03	5 : 0.01	g : 0.01	b : 0.01	f : 0.01	a : 0.01	
c : 0.20	2 : 0.18	4 : 0.16	3 : 0.14	e : 0.10	a : 0.03	6 : 0.03	] : 0.03	5 : 0.01	g : 0.01	b : 0.01	f : 0.01	d : 0.01	
3 : 0.23	2 : 0.18	c : 0.18	4 : 0.16	b : 0.05	e : 0.03	6 : 0.03	f : 0.03	5 : 0.01	g : 0.01	] : 0.01	d : 0.01	
c : 0.21	3 : 0.18	b : 0.12	4 : 0.12	2 : 0.07	e : 0.05	d : 0.05	a : 0.03	6 : 0.03	5 : 0.01	= : 0.01	g : 0.01	] : 0.01	f : 0.01	
c : 0.14	b : 0.12	] : 0.12	3 : 0.12	4 : 0.09	2 : 0.07	d : 0.07	a : 0.03	e : 0.03	g : 0.03	6 : 0.03	5 : 0.01	= : 0.01	f : 0.01	h : 0.01	i : 0.01	
c : 0.16	a : 0.12	d : 0.12	] : 0.09	b : 0.07	2 : 0.07	= : 0.05	i : 0.05	3 : 0.05	e : 0.03	g : 0.03	6 : 0.03	4 : 0.03	f : 0.01	h : 0.01	
c : 0.20	d : 0.12	] : 0.09	i : 0.09	2 : 0.07	4 : 0.07	3 : 0.05	g : 0.05	= : 0.05	b : 0.05	a : 0.05	e : 0.03	f : 0.01	h : 0.01	
c : 0.21	3 : 0.12	e : 0.10	2 : 0.09	i : 0.09	4 : 0.07	d : 0.07	= : 0.05	] : 0.05	g : 0.03	b : 0.03	f : 0.01	h : 0.01	
c : 0.18	3 : 0.10	e : 0.10	] : 0.09	i : 0.09	d : 0.07	= : 0.07	2 : 0.05	g : 0.05	4 : 0.05	b : 0.05	f : 0.03	h : 0.01	
c : 0.16	3 : 0.12	= : 0.10	e : 0.10	g : 0.10	i : 0.09	4 : 0.05	a : 0.03	b : 0.03	] : 0.03	f : 0.03	8 : 0.03	d : 0.01	h : 0.01	2 : 0.01	
c : 0.18	= : 0.16	e : 0.16	g : 0.14	i : 0.10	d : 0.05	] : 0.03	3 : 0.03	f : 0.03	8 : 0.03	h : 0.01	4 : 0.01	
= : 0.16	e : 0.14	c : 0.14	g : 0.12	i : 0.10	d : 0.07	] : 0.05	3 : 0.03	f : 0.03	8 : 0.03	a : 0.01	h : 0.01	b : 0.01	4 : 0.01	
= : 0.16	g : 0.12	i : 0.10	d : 0.09	c : 0.09	] : 0.07	e : 0.07	b : 0.05	8 : 0.05	2 : 0.03	a : 0.03	f : 0.03	4 : 0.01	: : 0.01	3 : 0.01	
= : 0.16	] : 0.12	d : 0.10	g : 0.10	i : 0.09	8 : 0.07	b : 0.05	2 : 0.05	: : 0.05	e : 0.05	f : 0.05	5 : 0.01	c : 0.01	3 : 0.01	

#score	766.6331791445236
#seq	55
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_UTR_m3_run2.txt

#BEAR
eeeee[ccc!!cccmmmmccc]ccc]eeeeee	chr6:33264753-33265046(-)$1	293	108	140	12.7081
eeee==========mmmm==========FFFF	chr19:1271458-1271726(+)$1	268	69	101	10.9729
ggggg:dddd[cccmmmmccc]ddddeeeee!	chr2:38536350-38536632(-)$1	282	117	149	9.8837
ggggggg"""ddddooooooddddggggggg:	chr17:8111115-8111359(-)$1	244	48	80	10.6579
eddddccc"""cccmmmmccc22ccc]dddd:	chr11:6621542-6621800(-)$1	258	63	95	12.4048
ddd!!bb####cccmmmmccc4444bb]dddd	chr7:73663916-73664222(-)$1	306	170	202	14.3439
!!ccc!!bb"""bbmmmmbb4444bb4444cc	chr12:57504864-57505165(-)$1	301	231	263	12.8893
!ffffff####cccmmmmccc22ffffffbb]	chr19:10572308-10572574(+)$1	266	158	190	13.7885
eeeeeee[a[cccammmma]ccc]a]eeeeeG	chr17:34171095-34171390(+)$1	295	253	285	11.7973
fff[bb[a"""ccclllccc]abb]ffffffd	chr1:22178992-22179296(-)$1	304	63	95	10.4100
eeeee"""a[ddddoooooodddd]aeeeee8	chr12:56120677-56120941(-)$1	264	117	149	9.9361
=========]ccc4444dddd4444ccc333f	chr2:135677324-135677629(+)$1	305	217	249	9.7769
bb[ddddaa[ddddmmmmdddd]a]a]dddd2	chr9:130863390-130863691(+)$1	301	138	170	11.8261
[cccccc"""a[bbmmmmbb]a333ccc]ccc	chr19:46026984-46027273(+)$1	289	8	40	14.8130
:ffffff####cccmmmmccc333ffffff::	chr8:144921242-144921487(-)$1	245	66	98	13.0007
fff[a[a!!a!!bbmmmmbb22a22aa]ffff	chr15:34651809-34652061(-)$1	252	5	37	12.5744
dffffff"""cccooooooccc333ffffff7	chr16:2012194-2012403(-)$1	209	20	52	12.1010
ddd[eeeee"""bbmmmmbb4444eeeee22d	chr7:65440826-65441094(-)$1	268	67	99	12.2116
[cccggggggg[bbmmmmbb]ggggggg]ccc	chr6:74230451-74230707(-)$1	256	187	219	11.3928
ddd!!ffffffcccmmmmccc4444ffffffd	chr8:117863920-117864218(-)$1	298	88	120	12.6852
!!ggggggg[ddddmmmmddddggggggg333	chr1:249151532-249151859(-)$1	327	275	307	13.0371
a[ccc[bb!!ddddmmmmdddd22bbccca22	chr22:20939221-20939458(+)$1	237	129	161	12.6070
ggggggg"""ddddmmmmdddd333ggggggg	chr11:10829070-10829291(-)$1	221	97	129	15.8681
bb[ffffff!!cccmmmmccc333ffffffbb	chr6:111213978-111214231(+)$1	253	212	244	13.2668
[bb[ggggggg[bbmmmmbb]ggggggg]bb]	chr16:31202167-31202424(+)$1	257	78	110	10.6321
=====[eeeee[bbmmmmbbeeeee=======	chr1:220384066-220384344(-)$1	278	50	82	10.4537
ffffffdddd[cccmmmmccc]ddddccc[bb	chr2:191785738-191786051(+)$1	313	165	197	10.2242
ccc[a[ccc[ddddmmmmdddd]ccc]a]ccc	chr1:150522516-150522754(+)$1	238	113	145	12.9325
hheeeee####cccmmmmccc4444eeeee::	chr12:57908781-57909050(+)$1	269	117	149	13.7159
ggg[bb####ddddmmmmdddd333bb]gggg	chr15:45008565-45008828(+)$1	263	223	255	14.7525
ffffff!!a[ddddmmmmdddda333ffffff	chrX:153647890-153648152(+)$1	262	150	182	13.9393
fffffffff!!cccmmmmccc>>>>>>>>>>>	chr1:249151851-249152156(-)$1	305	196	228	11.3220
!eeeee####ddddmmmmdddd4444eeeee]	chr2:219142068-219142329(-)$1	261	214	246	15.1410
!!eeeee!!eeeeemmmmeeeeeeeeee]eee	chr2:131878361-131878677(+)$1	316	39	71	10.5737
$$ffffff[eeeeemmmmeeeee333ffffff	chr22:19393118-19393421(-)$1	303	42	74	10.8739
ggggggg####cccmmmmccc4444ggggggg	chr8:74203106-74203387(-)$1	281	148	180	16.2955
bb[a[a[a!!ddddllldddd22a]a]a]bb]	chr19:11038922-11039180(-)$1	258	223	255	10.9260
::eeeee####cccmmmmccc333eeeee:::	chr20:34317145-34317386(-)$1	241	204	236	11.0228
dddd[bb####bboooooobb4444bb]dddd	chr1:55518171-55518463(+)$1	292	78	110	10.3266
cccdddd"""ddddmmmmdddd4444dddd]c	chr16:3729587-3729846(-)$1	259	41	73	14.2204
cccbb$$$$$ddddmmmmdddd4444bb]ccc	chr14:24034793-24035055(-)$1	262	178	210	13.0887
"eeeeebb!!ddddmmmmdddd]bb]eeeeeg	chr11:71939061-71939344(+)$1	283	175	207	12.1789
dd[ccc####ddddmmmmdddd333cccdddd	chr14:24606625-24606900(+)$1	275	149	181	14.5918
:ccc!!ccc[ddddmmmmdddd4444ccc22c	chr17:7155864-7156166(+)$1	302	157	189	12.8517
%%%%dddd"""cccmmmmccc333dddd4444	chr19:3206118-3206375(+)$1	257	134	166	11.3077
[cccggggggg[bbmmmmbb]ggggggg]ccc	chr6:74230407-74230631(-)$1	224	111	143	11.3928
3ddddiiiiiiiiimmmmiiiiiiiiifffff	chr6:31727002-31727338(+)$1	336	192	224	10.5857
hhhhhhhh[addddmmmmdddd4444a]hhhh	chr4:37848624-37848911(+)$1	287	63	95	11.6619
ggggggg####cccmmmmccc4444ggggggg	chr8:74202984-74203306(-)$1	322	67	99	16.2955
:ggggggg"""ccclllccc4444ggggggg:	chr7:44838727-44838994(+)$1	267	116	148	11.7826
f!!a!!a[ddddbbmmmmbb4444dddd]a22	chr3:50137404-50137695(+)$1	291	184	216	11.9787

#otherMatches

#Seq PSSM
GGGGGUGGUGUGGAACUGUCUGACUUCCCCUU	chr6:33264753-33265046(-)$1	293	108	140	12.7081
UCACUUUUUCCUGUAUGUGCAGGAGGAGGGGA	chr19:1271458-1271726(+)$1	268	69	101	10.9729
UGAGCUCUUAAACAGUUUUGUCUAAGAUAGAA	chr2:38536350-38536632(-)$1	282	117	149	9.8837
GGGAAGCAAAACUGUCACAUCAGUGUUUCUCU	chr17:8111115-8111359(-)$1	244	48	80	10.6579
AGGCUUCAAGAUUGUCUCCAAGGUGAGGGCCC	chr11:6621542-6621800(-)$1	258	63	95	12.4048
GGGCCUGUUGAGUGUCUCCAUGUCUCAUCCCA	chr7:73663916-73664222(-)$1	306	170	202	14.3439
AAGACAGCAGAGGGGUUGCCGAGGUGAGGGGU	chr12:57504864-57505165(-)$1	301	231	263	12.8893
GGCUUCUACCUGGUGAAAACUUCAGAGGCCCG	chr19:10572308-10572574(+)$1	266	158	190	13.7885
AGGACUCUCGUCCCUCAGGAGGAGGUGGGUCA	chr17:34171095-34171390(+)$1	295	253	285	11.7973
GGCCUCAGUCCUGGUCACCAUCGAAGCCUCUG	chr1:22178992-22179296(-)$1	304	63	95	10.4100
CAGGGACCGGCUGUGCCAAAACGGGCCCCUGU	chr12:56120677-56120941(-)$1	264	117	149	9.9361
GUUGGAUUUAGUGUUCUGAAUUAACGGUAAAC	chr2:135677324-135677629(+)$1	305	217	249	9.7769
GGUCCAGCCUCGGGCCUCCCCGUGCGCCUGGC	chr9:130863390-130863691(+)$1	301	138	170	11.8261
GUACCAUGAGGGUAGGGAUAGUGGGAUGUGUG	chr19:46026984-46027273(+)$1	289	8	40	14.8130
AGGAGUUCUGAUGCCCCAGCAGCUAACUCCAC	chr8:144921242-144921487(-)$1	245	66	98	13.0007
CUUGUGCACCACCCUUUUGGAAGAGGAGGAGC	chr15:34651809-34652061(-)$1	252	5	37	12.5744
CGACAGACCCGCCCAGAAUGGCCUCUCUGUUC	chr16:2012194-2012403(-)$1	209	20	52	12.1010
GCCCUGCCUAUCUGUAUUCAUUGGAGGUAAUG	chr7:65440826-65441094(-)$1	268	67	99	12.2116
UGGGGCCGCCGCGUGCGAAUCUGGUGGCACCU	chr6:74230451-74230707(-)$1	256	187	219	11.3928
AAGUGGUAUUUAGGGAGGCCUUUUAAAGUAUC	chr8:117863920-117864218(-)$1	298	88	120	12.6852
GGGGCUUGUGUGGGAGUGCUCAGCAGGCCAUA	chr1:249151532-249151859(-)$1	327	275	307	13.0371
GCGUGUGCCAGGUGUGGUCACCAUGCCGCCUC	chr22:20939221-20939458(+)$1	237	129	161	12.6070
UAGAAUGUGGCUUUUUCAAAAGAUUCGUUCUG	chr11:10829070-10829291(-)$1	221	97	129	15.8681
UCCUAUGAUGACCUGAUCAGGAAAGUUGUAGA	chr6:111213978-111214231(+)$1	253	212	244	13.2668
GAAUGGGAAUAUGAUAGAUCUUGUUUCUUUUG	chr16:31202167-31202424(+)$1	257	78	110	10.6321
AAGGAUAAAUAAGAGUCAUCUGUUUUCUUUGC	chr1:220384066-220384344(-)$1	278	50	82	10.4537
GAAUAUGUUGGAUUCAGUAAUGCAACGUGAGU	chr2:191785738-191786051(+)$1	313	165	197	10.2242
UGGCCAGGAGGAGCCCGCGUUUGUCCAGACCA	chr1:150522516-150522754(+)$1	238	113	145	12.9325
CUGGAGGUCUUGACUAAUGUCUCCUCUUCCUC	chr12:57908781-57909050(+)$1	269	117	149	13.7159
GCCAGUAUGGUAUUGCAGGAUAAAGGCAGGUG	chr15:45008565-45008828(+)$1	263	223	255	14.7525
CAGGGAAAGUGAACAUGAGUUCCGAAUUCCUG	chrX:153647890-153648152(+)$1	262	150	182	13.9393
CCUCCUUUCAAAGGGAGCCCUGAGUAAGUUUG	chr1:249151851-249152156(-)$1	305	196	228	11.3220
GUCACCAUCUUCUGCUUUCAGACCAAGGUGAG	chr2:219142068-219142329(-)$1	261	214	246	15.1410
GGCCCUUCCUCAGCUGAUGCUGAAGGGGAUAA	chr2:131878361-131878677(+)$1	316	39	71	10.5737
CGGCUCCAGUGGUAAGCUUGCCAAUGUGGAGC	chr22:19393118-19393421(-)$1	303	42	74	10.8739
AGAGUAUAAGUGGUGGUAAUCUUGAAUACUUU	chr8:74203106-74203387(-)$1	281	148	180	16.2955
GGCUGUGAACCCUGACCCAGGAGUGAGAccca	chr19:11038922-11039180(-)$1	258	223	255	10.9260
GGUACUGUUAAAUUUGAUGAUAUUUAGUAAUU	chr20:34317145-34317386(-)$1	241	204	236	11.0228
UCCAGCCACCUGCUGAUUUGUUAUAGGGUGGA	chr1:55518171-55518463(+)$1	292	78	110	10.3266
GUCUCUCUCCUCAGGAUACUGGUAUCGGGAUG	chr16:3729587-3729846(-)$1	259	41	73	14.2204
CUGGUGACAAUGGGAUACUCCACAGAACACAG	chr14:24034793-24035055(-)$1	262	178	210	13.0887
UCAGAAGCAUGUGCACACGUAUCGCAUUCUGC	chr11:71939061-71939344(+)$1	283	175	207	12.1789
GUACUUGAAACCACAAUGGUGGGAAGAGACUU	chr14:24606625-24606900(+)$1	275	149	181	14.5918
CGCGACGGGUUCGCGAAGGCGGUAAUCCCAGC	chr17:7155864-7156166(+)$1	302	157	189	12.8517
CCUACAGCAGAUCCAGCAGGAGCAGCUGGACU	chr19:3206118-3206375(+)$1	257	134	166	11.3077
UGGGGCCGCCGCGUGCGAAUCUGGUGGCACCU	chr6:74230407-74230631(-)$1	224	111	143	11.3928
UACCCAGUUUCUCUCAGAGGAGAAGCUGCACU	chr6:31727002-31727338(+)$1	336	192	224	10.5857
AAAAUCUUGCGGGCCAUUGCCUUAAAGGAAGG	chr4:37848624-37848911(+)$1	287	63	95	11.6619
AGAGUAUAAGUGGUGGUAAUCUUGAAUACUUU	chr8:74202984-74203306(-)$1	322	67	99	16.2955
AGCUGUUUGCAGACAAGGUCCCAAAGACAGCA	chr7:44838727-44838994(+)$1	267	116	148	11.7826
AAUGAAAGGUUUGCCAUGGCUAAGGAAUGUGA	chr3:50137404-50137695(+)$1	291	184	216	11.9787

#DB
(((((.(((..(((....))).))).))))))	chr6:33264753-33265046(-)$1	1	108	140	12.7081
))))((((((((((....))))))))))((((	chr19:1271458-1271726(+)$1	1	69	101	10.9729
))))).((((.(((....))).))))(((((.	chr2:38536350-38536632(-)$1	1	117	149	9.8837
(((((((...((((......))))))))))).	chr17:8111115-8111359(-)$1	1	48	80	10.6579
)(((((((...(((....)))..))).)))).	chr11:6621542-6621800(-)$1	1	63	95	12.4048
(((..((....(((....)))....)).))))	chr7:73663916-73664222(-)$1	1	170	202	14.3439
..(((..((...((....))....))....))	chr12:57504864-57505165(-)$1	1	231	263	12.8893
.((((((....(((....)))..)))))))).	chr19:10572308-10572574(+)$1	1	158	190	13.7885
))(((((.(.((((....).))).).))))))	chr17:34171095-34171390(+)$1	1	253	285	11.7973
(((.((.(...(((...))).))).))))))(	chr1:22178992-22179296(-)$1	1	63	95	10.4100
(((((...(.((((......)))).)))))).	chr12:56120677-56120941(-)$1	1	117	149	9.9361
))))))))).)))....))))....)))...)	chr2:135677324-135677629(+)$1	1	217	249	9.7769
((.((((((.((((....)))).).).)))).	chr9:130863390-130863691(+)$1	1	138	170	11.8261
.((((((...(.((....)).)...))).)))	chr19:46026984-46027273(+)$1	1	8	40	14.8130
.((((((....(((....)))...))))))..	chr8:144921242-144921487(-)$1	1	66	98	13.0007
(((.(.(..(..((....))..)..)).))))	chr15:34651809-34652061(-)$1	1	5	37	12.5744
(((((((...(((......)))...)))))).	chr16:2012194-2012403(-)$1	1	20	52	12.1010
(((.(((((...((....))....)))))..)	chr7:65440826-65441094(-)$1	1	67	99	12.2116
.((((((((((.((....)).))))))).)))	chr6:74230451-74230707(-)$1	1	187	219	11.3928
(((..(((((((((....)))....)))))))	chr8:117863920-117864218(-)$1	1	88	120	12.6852
..(((((((.((((....)))))))))))...	chr1:249151532-249151859(-)$1	1	275	307	13.0371
(.(((.((..((((....))))..))))))..	chr22:20939221-20939458(+)$1	1	129	161	12.6070
(((((((...((((....))))...)))))))	chr11:10829070-10829291(-)$1	1	97	129	15.8681
((.((((((..(((....)))...))))))))	chr6:111213978-111214231(+)$1	1	212	244	13.2668
.((.(((((((.((....)).))))))).)).	chr16:31202167-31202424(+)$1	1	78	110	10.6321
(((((.(((((.((....))))))))))))))	chr1:220384066-220384344(-)$1	1	50	82	10.4537
))))))((((.(((....))).))))(((.((	chr2:191785738-191786051(+)$1	1	165	197	10.2242
(((.(.(((.((((....)))).))).).)))	chr1:150522516-150522754(+)$1	1	113	145	12.9325
))(((((....(((....)))....)))))..	chr12:57908781-57909050(+)$1	1	117	149	13.7159
(((.((....((((....))))...)).))))	chr15:45008565-45008828(+)$1	1	223	255	14.7525
((((((..(.((((....)))))...))))))	chrX:153647890-153648152(+)$1	1	150	182	13.9393
(((((((((..(((....)))...........	chr1:249151851-249152156(-)$1	1	196	228	11.3220
.(((((....((((....))))....))))).	chr2:219142068-219142329(-)$1	1	214	246	15.1410
..(((((..(((((....)))))))))).)))	chr2:131878361-131878677(+)$1	1	39	71	10.5737
..((((((.(((((....)))))...))))))	chr22:19393118-19393421(-)$1	1	42	74	10.8739
(((((((....(((....)))....)))))))	chr8:74203106-74203387(-)$1	1	148	180	16.2955
((.(.(.(..((((...))))..).).).)).	chr19:11038922-11039180(-)$1	1	223	255	10.9260
..(((((....(((....)))...)))))...	chr20:34317145-34317386(-)$1	1	204	236	11.0228
((((.((....((......))....)).))))	chr1:55518171-55518463(+)$1	1	78	110	10.3266
(((((((...((((....))))....)))).)	chr16:3729587-3729846(-)$1	1	41	73	14.2204
(((((.....((((....))))....)).)))	chr14:24034793-24035055(-)$1	1	178	210	13.0887
.(((((((..((((....)))).)).))))))	chr11:71939061-71939344(+)$1	1	175	207	12.1789
((.(((....((((....))))...)))))))	chr14:24606625-24606900(+)$1	1	149	181	14.5918
.(((..(((.((((....))))....)))..)	chr17:7155864-7156166(+)$1	1	157	189	12.8517
....((((...(((....)))...))))....	chr19:3206118-3206375(+)$1	1	134	166	11.3077
.((((((((((.((....)).))))))).)))	chr6:74230407-74230631(-)$1	1	111	143	11.3928
.))))(((((((((....)))))))))(((((	chr6:31727002-31727338(+)$1	1	192	224	10.5857
((((((((.(((((....))))....).))))	chr4:37848624-37848911(+)$1	1	63	95	11.6619
(((((((....(((....)))....)))))))	chr8:74202984-74203306(-)$1	1	67	99	16.2955
.(((((((...(((...)))....))))))).	chr7:44838727-44838994(+)$1	1	116	148	11.7826
(..(..(.((((((....))....)))).)..	chr3:50137404-50137695(+)$1	1	184	216	11.9787

#PSSM
g : 0.11	d : 0.11	f : 0.11	e : 0.09	! : 0.09	[ : 0.07	: : 0.07	b : 0.05	c : 0.05	= : 0.03	h : 0.03	a : 0.01	$ : 0.01	" : 0.01	% : 0.01	3 : 0.01	
f : 0.15	g : 0.13	d : 0.13	c : 0.13	e : 0.11	! : 0.07	b : 0.07	= : 0.03	h : 0.03	[ : 0.01	$ : 0.01	: : 0.01	% : 0.01	
e : 0.17	c : 0.17	f : 0.17	g : 0.15	d : 0.11	[ : 0.07	= : 0.03	b : 0.01	% : 0.01	h : 0.01	! : 0.01	
e : 0.17	f : 0.15	g : 0.13	c : 0.13	[ : 0.11	d : 0.09	! : 0.03	= : 0.03	a : 0.03	b : 0.01	% : 0.01	h : 0.01	
g : 0.19	e : 0.17	f : 0.15	d : 0.09	! : 0.07	c : 0.07	= : 0.05	b : 0.05	a : 0.03	[ : 0.03	h : 0.01	
g : 0.17	f : 0.17	e : 0.13	[ : 0.09	b : 0.07	c : 0.05	! : 0.05	d : 0.05	= : 0.03	: : 0.01	" : 0.01	a : 0.01	$ : 0.01	i : 0.01	h : 0.01	
g : 0.17	f : 0.13	e : 0.11	c : 0.09	d : 0.09	b : 0.07	# : 0.05	= : 0.03	! : 0.03	[ : 0.03	a : 0.03	" : 0.01	$ : 0.01	i : 0.01	h : 0.01	
# : 0.21	" : 0.11	g : 0.09	c : 0.07	f : 0.07	d : 0.05	b : 0.05	a : 0.05	! : 0.05	= : 0.03	[ : 0.03	e : 0.03	$ : 0.01	i : 0.01	h : 0.01	
# : 0.21	" : 0.17	! : 0.09	a : 0.07	g : 0.07	c : 0.05	d : 0.05	f : 0.05	= : 0.03	e : 0.03	[ : 0.03	b : 0.01	$ : 0.01	i : 0.01	
" : 0.21	# : 0.21	[ : 0.13	! : 0.11	d : 0.05	g : 0.05	e : 0.05	a : 0.03	= : 0.01	] : 0.01	f : 0.01	$ : 0.01	i : 0.01	
d : 0.35	# : 0.15	" : 0.11	! : 0.07	c : 0.05	g : 0.05	e : 0.05	[ : 0.03	= : 0.01	a : 0.01	f : 0.01	i : 0.01	
c : 0.39	d : 0.35	[ : 0.09	" : 0.03	e : 0.03	= : 0.01	! : 0.01	b : 0.01	i : 0.01	
c : 0.39	d : 0.33	b : 0.19	e : 0.03	= : 0.01	i : 0.01	
c : 0.33	d : 0.33	b : 0.17	o : 0.03	e : 0.03	= : 0.01	a : 0.01	4 : 0.01	i : 0.01	
m : 0.84	o : 0.07	l : 0.05	4 : 0.01	
m : 0.84	o : 0.07	l : 0.05	4 : 0.01	
m : 0.84	o : 0.07	l : 0.05	4 : 0.01	
m : 0.84	o : 0.07	c : 0.03	d : 0.03	
c : 0.33	d : 0.31	b : 0.17	o : 0.07	e : 0.03	= : 0.01	a : 0.01	i : 0.01	
c : 0.35	d : 0.31	b : 0.19	o : 0.03	e : 0.03	= : 0.01	] : 0.01	i : 0.01	
d : 0.35	c : 0.33	] : 0.09	4 : 0.07	e : 0.05	= : 0.01	2 : 0.01	b : 0.01	i : 0.01	
d : 0.31	4 : 0.21	2 : 0.07	3 : 0.07	] : 0.05	g : 0.05	e : 0.05	c : 0.03	a : 0.03	= : 0.01	> : 0.01	i : 0.01	
4 : 0.31	3 : 0.17	d : 0.07	2 : 0.07	g : 0.07	] : 0.05	e : 0.05	c : 0.03	a : 0.03	= : 0.01	b : 0.01	> : 0.01	i : 0.01	
4 : 0.31	3 : 0.21	d : 0.07	g : 0.07	c : 0.05	b : 0.03	a : 0.03	2 : 0.03	e : 0.03	= : 0.01	f : 0.01	] : 0.01	> : 0.01	i : 0.01	
4 : 0.23	3 : 0.13	g : 0.11	d : 0.07	] : 0.07	e : 0.07	c : 0.05	b : 0.05	f : 0.05	= : 0.01	a : 0.01	2 : 0.01	> : 0.01	i : 0.01	
g : 0.17	f : 0.11	c : 0.09	b : 0.09	4 : 0.09	d : 0.07	a : 0.07	e : 0.07	] : 0.05	= : 0.03	3 : 0.03	> : 0.01	i : 0.01	
e : 0.19	g : 0.17	f : 0.15	c : 0.11	] : 0.07	b : 0.07	d : 0.05	= : 0.03	a : 0.03	4 : 0.01	> : 0.01	i : 0.01	
e : 0.19	g : 0.17	f : 0.17	c : 0.11	d : 0.09	] : 0.09	= : 0.03	a : 0.03	4 : 0.01	> : 0.01	b : 0.01	
f : 0.19	e : 0.17	] : 0.17	g : 0.13	d : 0.11	c : 0.05	4 : 0.03	F : 0.01	3 : 0.01	= : 0.01	> : 0.01	h : 0.01	
f : 0.17	e : 0.15	g : 0.11	d : 0.11	c : 0.09	b : 0.05	4 : 0.03	3 : 0.03	2 : 0.03	a : 0.03	F : 0.01	= : 0.01	[ : 0.01	> : 0.01	: : 0.01	h : 0.01	
e : 0.13	f : 0.13	g : 0.11	c : 0.11	d : 0.09	b : 0.09	2 : 0.07	: : 0.05	3 : 0.03	F : 0.01	= : 0.01	> : 0.01	] : 0.01	4 : 0.01	h : 0.01	
c : 0.15	: : 0.11	d : 0.11	f : 0.09	g : 0.09	] : 0.07	2 : 0.05	e : 0.03	b : 0.03	F : 0.01	! : 0.01	G : 0.01	8 : 0.01	7 : 0.01	3 : 0.01	= : 0.01	> : 0.01	4 : 0.01	h : 0.01	

#score	630.0237402717727
#seq	51
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_CDS_m2_run2.txt

#BEAR
iiiiiidddd"""ccclllccc4444dddd22ii	chr1:26139047-26139290(+)$1	243	115	149	9.9827
ggggggg!!gggggggoooooogggggggggggg	chr22:24313649-24313936(-)$1	287	70	104	13.6705
ggggggg$$$$$dddd[aooooooa]dddd7777	chr21:47612358-47612567(-)$1	209	62	96	10.7953
ffff[ggggggg[a[ammmmaa]ggggggg]fff	chr21:46929208-46929437(-)$1	229	119	153	9.6646
ggggggg"""gggggggnnnnnggggggg333gg	chr12:76448730-76448970(-)$1	240	189	223	11.7211
dddd"""ggggggg[cccmmmmccc]gggggggd	chr18:55282834-55283054(-)$1	220	26	60	11.1507
!!ggggggg$$$$$eeeeellleeeeeggggggg	chr6:116911354-116911618(+)$1	264	95	129	10.3210
eeee"""ffffff!!cccmmmmccc22ffffff4	chr6:44218186-44218427(+)$1	241	115	149	9.9829
odddd:ggggggg!!cccmmmmccc22ggggggg	chrX:135593971-135594255(+)$1	284	20	54	10.4011
eeeee[ccc[ccceeeeellleeeee22ccc]cc	chr12:6879238-6879468(+)$1	230	151	185	9.9670
dddd"""ggggggg[cccmmmmccc]gggggggd	chr18:55282803-55283034(-)$1	231	6	40	11.1507
"ggggggg[a####bboooooobb22a]gggggg	chr1:26138269-26138543(+)$1	274	85	119	13.8208
b[a[dddd[a!!ddddoooooodddd22adddda	chr14:65233292-65233506(-)$1	214	149	183	12.8470
ddd[bbcccbb####cccmmmmccc333bb]ccc	chr14:102551021-102551256(-)$1	235	153	187	11.5612
eeee[dddd[bb[cccooooooccc22bb]dddd	chrM:14217-14453(-)$1	236	81	115	12.3273
d!!ccc[a!!dddd[aooooooa]dddd22a]cc	chr14:65239510-65239747(-)$1	237	167	201	12.0995
fff[ggggggg[ddddooooooddddggggggg]	chr17:34151029-34151304(+)$1	275	9	43	12.9174
===!!bb$$$$$ddddoooooodddd333bb22=	chr13:31035425-31035661(-)$1	236	150	184	13.6628
c####bb!!gggggggooooooggggggg22bb3	chr9:100777600-100777819(+)$1	219	19	53	12.5092
$$$$$ggggggg[ddddmmmmddddggggggg33	chr12:76449816-76450021(-)$1	205	157	191	9.7199
ggggggg$$$$$dddd[aooooooa]dddd7777	chr21:47612367-47612613(-)$1	246	108	142	10.7953
eeee[dddd[bb[cccooooooccc22bb]dddd	chrM:14164-14381(-)$1	217	9	43	12.3273
ddd[bbcccbb####cccmmmmccc333bb]ccc	chr14:102551056-102551272(-)$1	216	169	203	11.5612
eeee[ccc"""eeeeeooooooeeeeeccc]eee	chr1:94341723-94341971(-)$1	248	184	218	12.7546
iiiiiiiii!!fffffflllffffffiiiiiiii	chr1:12004456-12004700(+)$1	244	134	168	9.7685
iiiii!!a[ccc!!bboooooobb22ccc]a]ii	chr19:10478991-10479329(-)$1	338	89	123	12.8925
gggggg333ddddcccoooooocccdddd!!ddd	chr12:76449778-76450000(-)$1	222	162	196	10.2312
fffdddddddd[ddddoooooodddd22dddd33	chr22:24313601-24313849(-)$1	248	51	85	11.3795
ggggggg$$$$$dddd[aooooooa]dddd7777	chr21:47612318-47612551(-)$1	233	46	80	10.7953
ccc[dddd####ddddooooooddddddddccc]	chr16:4721228-4721519(+)$1	291	244	278	12.9721
===!!bb$$$$$ddddoooooodddd333bb22=	chr13:31035375-31035625(-)$1	250	114	148	13.6628
[eeeee[ccc"""eeeeellleeeee22ccc]ee	chr14:65246430-65246666(-)$1	236	96	130	10.4856
ggggggg!!a[eeeeellleeeee]a22gggggg	chr4:145974804-145975061(-)$1	257	121	155	10.3229
====!!eeeee[ccccccmmmmccc22ccc]eee	chr9:99699330-99699572(-)$1	242	121	155	11.4498
ii::==========[cccmmmmccc]========	chrM:14364-14601(-)$1	237	97	131	10.7198
dd[dddd[a####ddddllldddd4444a]dddd	chr11:17332638-17332898(+)$1	260	130	164	10.5829
ddd[ggggggg!!cccooooooccc22ggggggg	chr19:41938162-41938488(-)$1	326	185	219	14.7400
========"""eeeee!!aooooooa22eeeee8	chr1:150192892-150193157(-)$1	265	166	200	11.5687
##bb[ccc####ccccccmmmmccc]cccccc]b	chr17:40371745-40371993(-)$1	248	19	53	11.9428
ggggggg"""gggggggnnnnnggggggg333gg	chr12:76448698-76448930(-)$1	232	149	183	11.7211
ddd[bbcccbb####cccmmmmccc333bb]ccc	chr14:102551017-102551221(-)$1	204	118	152	11.5612
ii[dddd[ccc[bb[cccmmmmccc333bb]ccc	chr20:57474796-57475104(+)$1	308	165	199	11.6015
"a[dddd####cccrrrrrrrrrcccdddd]a33	chr20:39721066-39721310(+)$1	244	76	110	10.2756
iiiiiccc!!gggggggrrrrrrrrrggggggg2	chr5:139903688-139903928(+)$1	240	122	156	10.1262
c####bb!!gggggggooooooggggggg22bb3	chr9:100777545-100777747(+)$1	202	74	108	12.5092
a[bb[ccc[ccc!!bboooooobb22ccc]ccc]	chr9:80646048-80646334(-)$1	286	203	237	12.0545
c$$$$$dddd"""bb!!aooooooa22bb333dd	chr5:149777853-149778097(+)$1	244	118	152	11.3290
=========####cccooooooccc333======	chr9:131456127-131456364(+)$1	237	36	70	17.1427
a[eeeee####eeeeemmmmeeeee333eeeee]	chrM:14181-14397(-)$1	216	113	147	9.9312
"ggggggg!!dddd[cccmmmmccc]dddd22gg	chr21:46951351-46951628(-)$1	277	137	171	11.4428
bb[bb[ccc!!eeeeeooooooeeeee22cccbb	chr14:65236214-65236481(-)$1	267	68	102	11.0102
"""cccccc####cccooooooccc4444ccc66	chrX:53610707-53610947(-)$1	240	78	112	14.4931
dd$$$$$bb"""bbrrrrrrrrrbb333bb4444	chr2:170667341-170667650(+)$1	309	178	212	9.6056
ggggg!!bb!!bb[aooooooa]bb333bb22gg	chr1:27105556-27105824(+)$1	268	166	200	12.4559

#otherMatches

#Seq PSSM
UCGGUGUGGCCCCAGGUCUCCUACUUGCCGUUCA	chr1:26139047-26139290(+)$1	243	115	149	9.9827
AAGAUGUGGUAUUAGCCAAGGAGCUGAUGAUAUC	chr22:24313649-24313936(-)$1	287	70	104	13.6705
GUacauggagacagauguacauacaggucuaugc	chr21:47612358-47612567(-)$1	209	62	96	10.7953
UGUCGUGCAGCUGCACCACGGGGGGCUGCAAGGC	chr21:46929208-46929437(-)$1	229	119	153	9.6646
UAUUUAUAAUUUUGUAACAUGCUUACAGGUAGAU	chr12:76448730-76448970(-)$1	240	189	223	11.7211
CGUGAACGUUGUUAAAGUUAGAACUCUGGCAACC	chr18:55282834-55283054(-)$1	220	26	60	11.1507
ACUCCAGUUACAAUUGAGAAUUUCUUAAAUUGGA	chr6:116911354-116911618(+)$1	264	95	129	10.3210
UCACUAAUGACUGGGAAGACCACUUGGCAGUCAA	chr6:44218186-44218427(+)$1	241	115	149	9.9829
GUUCGAAGAUGAUGAUUCCAAUGAGAAGUUGUUU	chrX:135593971-135594255(+)$1	284	20	54	10.4011
GGCUGGGUUGCUGGGCCUGAGGGGCUGUCAGGGA	chr12:6879238-6879468(+)$1	230	151	185	9.9670
CGUGAACGUUGUUAAAGUUAGAACUCUGGCAACC	chr18:55282803-55283034(-)$1	231	6	40	11.1507
GUACCCCUUCAAGAAGGUGAGGCUGGGCAGGGGU	chr1:26138269-26138543(+)$1	274	85	119	13.8208
GCGAGAUGAGCUGGCGCAGCCCCGCCCUCCAUCC	chr14:65233292-65233506(-)$1	214	149	183	12.8470
GAAAUCCCGACGAUAUUACUAAUGAGGAGUACGG	chr14:102551021-102551256(-)$1	235	153	187	11.5612
AUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUG	chrM:14217-14453(-)$1	236	81	115	12.3273
CAUCGACGCGGGCCACAGCGAGGCGGCCACCAUC	chr14:65239510-65239747(-)$1	237	167	201	12.0995
AAAUGAGAGUGGUUAUUUGUGUGUAAUAUUUUCU	chr17:34151029-34151304(+)$1	275	9	43	12.9174
gaugaUGAUGAUGAAUAAGUUGGUUCUAGCGCAG	chr13:31035425-31035661(-)$1	236	150	184	13.6628
UAAAGUCAAUUUUUGUUACUGUACagaggaggaa	chr9:100777600-100777819(+)$1	219	19	53	12.5092
AUUUUGGUUAACUGUUUUUAAGAAUGUUGACUUG	chr12:76449816-76450021(-)$1	205	157	191	9.7199
GUacauggagacagauguacauacaggucuaugc	chr21:47612367-47612613(-)$1	246	108	142	10.7953
AUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUG	chrM:14164-14381(-)$1	217	9	43	12.3273
GAAAUCCCGACGAUAUUACUAAUGAGGAGUACGG	chr14:102551056-102551272(-)$1	216	169	203	11.5612
AUGUAUUUCAAGUGGUUAAUUUACCAUAAAAAUA	chr1:94341723-94341971(-)$1	248	184	218	12.7546
AAGAGGGCCUCAGAGCUGGUGGCUCUGGUUCUCU	chr1:12004456-12004700(+)$1	244	134	168	9.7685
CUGCCCAGGGGCAACGUGAGACUGAAGCUGCAGG	chr19:10478991-10479329(-)$1	338	89	123	12.8925
UUGACUUGCUCAGUGAUAUGGUUCAGGUAAUUUU	chr12:76449778-76450000(-)$1	222	162	196	10.2312
UUUUCCCCUUGGAGUCCUGGCAGAUUGGCAAGAU	chr22:24313601-24313849(-)$1	248	51	85	11.3795
GUacauggagacagauguacauacaggucuaugc	chr21:47612318-47612551(-)$1	233	46	80	10.7953
GUGAGGUUUCCCUCUGCCAUUACAGAAGCCCACA	chr16:4721228-4721519(+)$1	291	244	278	12.9721
gaugaUGAUGAUGAAUAAGUUGGUUCUAGCGCAG	chr13:31035375-31035625(-)$1	250	114	148	13.6628
GAGGAGAUGCAGACUUGAGCAUCGAGAAGCGGUU	chr14:65246430-65246666(-)$1	236	96	130	10.4856
UUUUUCAGCCUCAUGUUUUACAUGUGAAUGAAGA	chr4:145974804-145975061(-)$1	257	121	155	10.3229
GGCCUGGGUGGUGGCAGGUGGGCCUUGGUCUCCG	chr9:99699330-99699572(-)$1	242	121	155	11.4498
AAUUUAUUUAGGGGGAAUGAUGGUUGUCUUUGGA	chrM:14364-14601(-)$1	237	97	131	10.7198
GGAAGAGACUGAUGGAUUGGAUCCUAAUGACUUU	chr11:17332638-17332898(+)$1	260	130	164	10.5829
AGGCUGGACAUCUCGGACCUCCCUGCCGUGUCCA	chr19:41938162-41938488(-)$1	326	185	219	14.7400
UCAUUCUAAGACCAGAUUCUCUAAUGUUUCUGGG	chr1:150192892-150193157(-)$1	265	166	200	11.5687
AAUGCAGUAUCUGAGCCCAGGAGGGUCUCGCUCC	chr17:40371745-40371993(-)$1	248	19	53	11.9428
UAUUUAUAAUUUUGUAACAUGCUUACAGGUAGAU	chr12:76448698-76448930(-)$1	232	149	183	11.7211
GAAAUCCCGACGAUAUUACUAAUGAGGAGUACGG	chr14:102551017-102551221(-)$1	204	118	152	11.5612
GACAAAGUAACUGACACAUGUUUGUUCAUCUGUU	chr20:57474796-57475104(+)$1	308	165	199	11.6015
AAGUGGAAAUUCCUAGAACAUAAAGGUCCAGUAU	chr20:39721066-39721310(+)$1	244	76	110	10.2756
AGAAUGAUGAAGAUGGUGAGAAACAAACCAUCUG	chr5:139903688-139903928(+)$1	240	122	156	10.1262
UAAAGUCAAUUUUUGUUACUGUACagaggaggaa	chr9:100777545-100777747(+)$1	202	74	108	12.5092
GGCGUGCUGCCUGAGCGAGGAGGCCAAGGAAGCC	chr9:80646048-80646334(-)$1	286	203	237	12.0545
CAAAGAUUCUGAGUCACCGUCCCAGAAGAAAAAG	chr5:149777853-149778097(+)$1	244	118	152	11.3290
UUUUUUUUAAGGUUCCCGAUAUGGAUGAUgaaga	chr9:131456127-131456364(+)$1	237	36	70	17.1427
GGGUCAGGGUUGAUUCGGGAGGAUCCUAUUGGUG	chrM:14181-14397(-)$1	216	113	147	9.9312
UGCUGCGGGAGCUGGGGGACAGCCUGCGGCGGCC	chr21:46951351-46951628(-)$1	277	137	171	11.4428
UCACCAGGGCAUCAAUGCAGAGAUUGAAACCCGG	chr14:65236214-65236481(-)$1	267	68	102	11.0102
UUUGGCCCUAGAGAGUACAAACACUGAAAAGGAG	chrX:53610707-53610947(-)$1	240	78	112	14.4931
CCAACAAGAAUCCCUAAACAAAUGGAAGUCAAAA	chr2:170667341-170667650(+)$1	309	178	212	9.6056
AGAGGAAGUAGUUGAAAAUGAUGAGGAGAUAGCC	chr1:27105556-27105824(+)$1	268	166	200	12.4559

#DB
((((((((((...(((...)))....))))..))	chr1:26139047-26139290(+)$1	1	115	149	9.9827
(((((((..(((((((......))))))))))))	chr22:24313649-24313936(-)$1	1	70	104	13.6705
(((((((.....((((.(......).))))....	chr21:47612358-47612567(-)$1	1	62	96	10.7953
((((.(((((((.(.(....)).))))))).)))	chr21:46929208-46929437(-)$1	1	119	153	9.6646
(((((((...(((((((.....)))))))...))	chr12:76448730-76448970(-)$1	1	189	223	11.7211
((((...(((((((.(((....))).))))))))	chr18:55282834-55283054(-)$1	1	26	60	11.1507
..(((((((.....(((((...))))))))))))	chr6:116911354-116911618(+)$1	1	95	129	10.3210
((((...((((((..(((....)))..)))))).	chr6:44218186-44218427(+)$1	1	115	149	9.9829
.)))).(((((((..(((....)))..)))))))	chrX:135593971-135594255(+)$1	1	20	54	10.4011
(((((.(((.((((((((...)))))..))).))	chr12:6879238-6879468(+)$1	1	151	185	9.9670
((((...(((((((.(((....))).))))))))	chr18:55282803-55283034(-)$1	1	6	40	11.1507
.(((((((.(....((......))..).))))))	chr1:26138269-26138543(+)$1	1	85	119	13.8208
(.(.((((.(..((((......))))..))))))	chr14:65233292-65233506(-)$1	1	149	183	12.8470
(((.(((((((....(((....)))...)).)))	chr14:102551021-102551256(-)$1	1	153	187	11.5612
((((.((((.((.(((......)))..)).))))	chrM:14217-14453(-)$1	1	81	115	12.3273
(..(((.(..((((.(......).))))..).))	chr14:65239510-65239747(-)$1	1	167	201	12.0995
(((.(((((((.((((......))))))))))).	chr17:34151029-34151304(+)$1	1	9	43	12.9174
(((..((.....((((......))))...))..)	chr13:31035425-31035661(-)$1	1	150	184	13.6628
(....((..(((((((......)))))))..)).	chr9:100777600-100777819(+)$1	1	19	53	12.5092
.....(((((((.((((....)))))))))))..	chr12:76449816-76450021(-)$1	1	157	191	9.7199
(((((((.....((((.(......).))))....	chr21:47612367-47612613(-)$1	1	108	142	10.7953
((((.((((.((.(((......)))..)).))))	chrM:14164-14381(-)$1	1	9	43	12.3273
(((.(((((((....(((....)))...)).)))	chr14:102551056-102551272(-)$1	1	169	203	11.5612
((((.(((...(((((......)))))))).)))	chr1:94341723-94341971(-)$1	1	184	218	12.7546
(((((((((..((((((...))))))))))))))	chr1:12004456-12004700(+)$1	1	134	168	9.7685
(((((..(.(((..((......))..))).).))	chr19:10478991-10479329(-)$1	1	89	123	12.8925
))))))...))))(((......)))((((..(((	chr12:76449778-76450000(-)$1	1	162	196	10.2312
)))((((((((.((((......))))..))))..	chr22:24313601-24313849(-)$1	1	51	85	11.3795
(((((((.....((((.(......).))))....	chr21:47612318-47612551(-)$1	1	46	80	10.7953
(((.((((....((((......))))))))))).	chr16:4721228-4721519(+)$1	1	244	278	12.9721
(((..((.....((((......))))...))..)	chr13:31035375-31035625(-)$1	1	114	148	13.6628
.(((((.(((...(((((...)))))..))).))	chr14:65246430-65246666(-)$1	1	96	130	10.4856
(((((((..(.(((((...))))).)..))))))	chr4:145974804-145975061(-)$1	1	121	155	10.3229
((((..(((((.((((((....)))..))).)))	chr9:99699330-99699572(-)$1	1	121	155	11.4498
))..((((((((((.(((....))).))))))))	chrM:14364-14601(-)$1	1	97	131	10.7198
((.((((.(....((((...))))....).))))	chr11:17332638-17332898(+)$1	1	130	164	10.5829
(((.(((((((..(((......)))..)))))))	chr19:41938162-41938488(-)$1	1	185	219	14.7400
((((((((...(((((..(......)..))))).	chr1:150192892-150193157(-)$1	1	166	200	11.5687
..((.(((....((((((....))).)))))).)	chr17:40371745-40371993(-)$1	1	19	53	11.9428
(((((((...(((((((.....)))))))...))	chr12:76448698-76448930(-)$1	1	149	183	11.7211
(((.(((((((....(((....)))...)).)))	chr14:102551017-102551221(-)$1	1	118	152	11.5612
((.((((.(((.((.(((....)))...)).)))	chr20:57474796-57475104(+)$1	1	165	199	11.6015
.(.((((....(((.........))))))).)..	chr20:39721066-39721310(+)$1	1	76	110	10.2756
((((((((..(((((((.........))))))).	chr5:139903688-139903928(+)$1	1	122	156	10.1262
(....((..(((((((......)))))))..)).	chr9:100777545-100777747(+)$1	1	74	108	12.5092
(.((.(((.(((..((......))..))).))).	chr9:80646048-80646334(-)$1	1	203	237	12.0545
(.....((((...((..(......)..))...))	chr5:149777853-149778097(+)$1	1	118	152	11.3290
(((((((((....(((......)))...))))))	chr9:131456127-131456364(+)$1	1	36	70	17.1427
(.(((((....(((((....)))))...))))).	chrM:14181-14397(-)$1	1	113	147	9.9312
.(((((((..((((.(((....))).))))..))	chr21:46951351-46951628(-)$1	1	137	171	11.4428
((.((.(((..(((((......)))))..)))))	chr14:65236214-65236481(-)$1	1	68	102	11.0102
...((((((....(((......)))....)))..	chrX:53610707-53610947(-)$1	1	78	112	14.4931
((.....((...((.........))...))....	chr2:170667341-170667650(+)$1	1	178	212	9.6056
(((((..((..((.(......).))...))..))	chr1:27105556-27105824(+)$1	1	166	200	12.4559

#PSSM
g : 0.16	d : 0.16	i : 0.11	e : 0.09	= : 0.09	" : 0.07	c : 0.07	f : 0.05	b : 0.03	a : 0.03	! : 0.01	o : 0.01	$ : 0.01	[ : 0.01	# : 0.01	
g : 0.20	d : 0.16	i : 0.11	e : 0.11	= : 0.09	f : 0.05	[ : 0.05	# : 0.05	! : 0.03	$ : 0.03	c : 0.01	a : 0.01	b : 0.01	" : 0.01	
g : 0.22	d : 0.12	e : 0.12	= : 0.09	i : 0.07	[ : 0.07	f : 0.05	$ : 0.05	# : 0.03	b : 0.03	a : 0.01	! : 0.01	c : 0.01	: : 0.01	" : 0.01	
g : 0.22	d : 0.12	e : 0.12	[ : 0.12	i : 0.07	$ : 0.05	= : 0.05	b : 0.05	c : 0.03	! : 0.03	# : 0.03	f : 0.01	: : 0.01	
g : 0.25	d : 0.12	[ : 0.11	i : 0.07	b : 0.07	" : 0.05	e : 0.05	! : 0.05	$ : 0.05	= : 0.05	c : 0.03	# : 0.03	
g : 0.27	d : 0.14	b : 0.12	c : 0.11	" : 0.05	! : 0.05	= : 0.05	i : 0.03	[ : 0.03	e : 0.03	$ : 0.03	: : 0.01	
g : 0.27	d : 0.18	c : 0.18	b : 0.07	" : 0.05	= : 0.05	[ : 0.03	! : 0.03	e : 0.03	i : 0.01	3 : 0.01	$ : 0.01	
c : 0.20	g : 0.18	d : 0.12	$ : 0.09	! : 0.07	= : 0.05	" : 0.03	a : 0.03	[ : 0.03	# : 0.03	b : 0.03	f : 0.01	i : 0.01	3 : 0.01	e : 0.01	
g : 0.14	c : 0.14	! : 0.12	d : 0.09	$ : 0.09	" : 0.07	[ : 0.07	# : 0.07	= : 0.03	b : 0.03	f : 0.01	i : 0.01	3 : 0.01	e : 0.01	a : 0.01	
g : 0.18	# : 0.12	$ : 0.11	! : 0.11	" : 0.09	d : 0.07	c : 0.07	[ : 0.05	a : 0.05	b : 0.05	f : 0.01	e : 0.01	= : 0.01	
g : 0.24	# : 0.14	" : 0.11	$ : 0.11	b : 0.09	c : 0.07	! : 0.07	d : 0.07	f : 0.01	[ : 0.01	e : 0.01	= : 0.01	
g : 0.20	# : 0.16	$ : 0.11	e : 0.09	" : 0.07	c : 0.07	[ : 0.07	b : 0.05	d : 0.05	f : 0.03	! : 0.03	= : 0.01	
d : 0.22	g : 0.16	# : 0.12	e : 0.09	[ : 0.07	c : 0.07	" : 0.05	! : 0.05	b : 0.05	f : 0.03	$ : 0.01	= : 0.01	
d : 0.24	c : 0.18	g : 0.14	e : 0.12	! : 0.07	# : 0.07	b : 0.05	a : 0.01	$ : 0.01	f : 0.01	= : 0.01	[ : 0.01	
d : 0.20	c : 0.16	e : 0.14	[ : 0.12	g : 0.11	b : 0.07	# : 0.05	! : 0.03	r : 0.03	f : 0.01	a : 0.01	
c : 0.35	d : 0.20	e : 0.14	g : 0.11	b : 0.05	a : 0.03	r : 0.03	f : 0.01	! : 0.01	o : 0.01	
o : 0.40	c : 0.22	[ : 0.05	g : 0.05	e : 0.05	l : 0.03	m : 0.03	d : 0.03	! : 0.03	r : 0.03	f : 0.01	
o : 0.40	c : 0.22	l : 0.07	a : 0.07	m : 0.05	e : 0.05	r : 0.05	n : 0.03	! : 0.01	
o : 0.48	m : 0.27	l : 0.11	r : 0.05	n : 0.03	e : 0.01	a : 0.01	
o : 0.49	m : 0.27	l : 0.09	r : 0.05	n : 0.03	c : 0.01	e : 0.01	
o : 0.49	m : 0.24	l : 0.05	r : 0.05	n : 0.03	e : 0.03	c : 0.01	a : 0.01	f : 0.01	d : 0.01	
o : 0.48	m : 0.22	e : 0.07	r : 0.05	a : 0.03	n : 0.03	d : 0.03	c : 0.01	l : 0.01	f : 0.01	
c : 0.33	d : 0.14	e : 0.12	g : 0.09	o : 0.09	b : 0.05	r : 0.05	] : 0.03	4 : 0.01	a : 0.01	f : 0.01	
c : 0.35	d : 0.14	e : 0.12	g : 0.11	o : 0.09	b : 0.09	4 : 0.01	] : 0.01	f : 0.01	r : 0.01	
c : 0.35	d : 0.14	g : 0.11	e : 0.11	a : 0.07	2 : 0.05	4 : 0.03	b : 0.03	f : 0.01	] : 0.01	o : 0.01	r : 0.01	
2 : 0.18	] : 0.14	d : 0.14	3 : 0.14	g : 0.12	e : 0.09	4 : 0.05	a : 0.03	f : 0.01	c : 0.01	r : 0.01	
2 : 0.24	g : 0.20	3 : 0.18	d : 0.16	e : 0.05	c : 0.05	4 : 0.03	a : 0.01	i : 0.01	= : 0.01	
g : 0.25	3 : 0.18	d : 0.16	2 : 0.12	c : 0.09	b : 0.05	4 : 0.03	f : 0.01	] : 0.01	i : 0.01	= : 0.01	
g : 0.29	d : 0.16	b : 0.16	c : 0.12	a : 0.03	2 : 0.03	3 : 0.03	= : 0.03	e : 0.03	f : 0.01	i : 0.01	4 : 0.01	
g : 0.22	d : 0.16	b : 0.14	c : 0.12	] : 0.09	3 : 0.05	2 : 0.05	= : 0.03	e : 0.03	f : 0.01	i : 0.01	! : 0.01	
g : 0.20	] : 0.14	c : 0.12	2 : 0.09	d : 0.09	7 : 0.05	3 : 0.05	a : 0.03	b : 0.03	= : 0.03	e : 0.03	f : 0.01	i : 0.01	! : 0.01	4 : 0.01	
g : 0.20	c : 0.16	d : 0.11	2 : 0.09	] : 0.07	e : 0.07	7 : 0.05	3 : 0.05	f : 0.03	b : 0.03	= : 0.03	i : 0.01	a : 0.01	4 : 0.01	
g : 0.25	c : 0.14	d : 0.11	e : 0.09	i : 0.05	7 : 0.05	b : 0.05	3 : 0.05	f : 0.03	2 : 0.03	= : 0.03	] : 0.01	6 : 0.01	4 : 0.01	
g : 0.18	d : 0.12	c : 0.11	3 : 0.09	] : 0.07	= : 0.07	i : 0.05	7 : 0.05	e : 0.05	4 : 0.03	b : 0.03	f : 0.01	a : 0.01	8 : 0.01	2 : 0.01	6 : 0.01	

#score	628.488085240396
#seq	54
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_transcript_m3_run1.txt

#BEAR
eeeeeqqqqqqqqeeeee	chr3:196644622-196644888(+)$1	266	164	182	13.5536
$$$bbqqqqqqqqbb333	chr20:40126729-40126968(-)$1	239	34	52	14.0975
fffffqqqqqqqqfffff	chr20:40127834-40128065(-)$1	231	168	186	13.1356
gggggqqqqqqqqggggg	chr16:72992681-72992939(-)$1	258	186	204	13.9306
gggggqqqqqqqqggggg	chr13:107220062-107220312(-)$1	250	148	166	13.9306
cccccqqqqqqqqccc33	chr20:45256930-45257189(-)$1	259	156	174	15.2035
eeeeeqqqqqqqqeeeee	chr1:214470944-214471207(+)$1	263	224	242	13.5536
"ddddqqqqqqqqdddd3	chr2:85768851-85769090(+)$1	239	184	202	13.7973
e[cccqqqqqqqqcccee	chr7:43670435-43670720(-)$1	285	50	68	14.9183
cccccqqqqqqqqccc22	chr16:90233513-90233731(+)$1	218	2	20	14.9554
ccc[aqqqqqqqqa]ccc	chr2:138751096-138751337(+)$1	241	111	129	13.7149
!!cccqqqqqqqqccc22	chr10:38407496-38407723(+)$1	227	184	202	15.4586
ffcccqqqqqqqqccc22	chr2:63105923-63106183(+)$1	260	171	189	14.8385
""cccqqqqqqqqccc33	chr8:38404014-38404313(-)$1	299	66	84	15.5355
fffffqqqqqqqqfffff	chr12:46589413-46589681(-)$1	268	150	168	13.1356
gggggqqqqqqqqggggg	chr8:17882817-17883050(+)$1	233	80	98	13.9306
cccccqqqqqqqqccc]c	chr16:20718229-20718455(+)$1	226	7	25	14.7789
""cccqqqqqqqqcccee	chr18:19391265-19391534(+)$1	269	245	263	14.9932
eeeeeqqqqqqqqeeeee	chr15:56208913-56209159(-)$1	246	111	129	13.5536
a[cccqqqqqqqqccca]	chr16:24802450-24802723(+)$1	273	145	163	14.9413
ggcccqqqqqqqqccc::	chr5:55433011-55433244(+)$1	233	81	99	12.9079
"""bbqqqqqqqqbb333	chr1:214819557-214819784(+)$1	227	187	205	14.7978
!!cccqqqqqqqqccc22	chrX:119677499-119677751(-)$1	252	63	81	15.4586
iiiiiqqqqqqqqiiiii	chr6:31856302-31856618(-)$1	316	114	132	13.9059
cccbbqqqqqqqqbb]cc	chr3:37992941-37993188(+)$1	247	226	244	13.8587
eeeeeqqqqqqqqeeeee	chr19:12638424-12638684(-)$1	260	227	245	13.5536
!!cccqqqqqqqqccc22	chr4:66886679-66886936(+)$1	257	117	135	15.4586
!!cccqqqqqqqqccc22	chr8:121727396-121727668(-)$1	272	97	115	15.4586
eeeeeqqqqqqqqeeeee	chr3:172110218-172110469(+)$1	251	197	215	13.5536
!!cccqqqqqqqqccc44	chr20:57260966-57261235(+)$1	269	78	96	15.3735
dddddqqqqqqqqdddd]	chr7:2793179-2793457(-)$1	278	179	197	13.4017
"""bbqqqqqqqqbb333	chr3:33590426-33590721(-)$1	295	102	120	14.7978
==cccqqqqqqqqcccee	chr11:47738891-47739125(-)$1	234	78	96	14.8495
gggggqqqqqqqqggggg	chr13:45150555-45150887(-)$1	332	143	161	13.9306
!!cccqqqqqqqqccc22	chr2:170493883-170494133(+)$1	250	89	107	15.4586
!!cccqqqqqqqqccc]d	chr14:39716485-39716737(+)$1	252	89	107	15.2241
[ddddqqqqqqqqdddd3	chr11:57076027-57076303(-)$1	276	223	241	13.8333
f[cccqqqqqqqqccc]f	chr18:72343152-72343439(+)$1	287	81	99	14.9291
eeebbqqqqqqqqbb]ee	chr15:102010106-102010352(-)$1	246	178	196	13.9295
dd[bbqqqqqqqqbb22d	chr9:131347937-131348230(+)$1	293	17	35	13.6854
g[cccqqqqqqqqcccgg	chr20:32676135-32676406(+)$1	271	25	43	14.9096
eeeeeqqqqqqqqeeeee	chr11:2677704-2677932(-)$1	228	49	67	13.5536
ff[bbqqqqqqqqbbfff	chrX:70779415-70779627(+)$1	212	21	39	13.5472
dddbbqqqqqqqqbb]dd	chr2:63083363-63083620(+)$1	257	138	156	13.5051
ddcccqqqqqqqqccc]d	chr14:103170334-103170607(+)$1	273	116	134	14.6138
fffffqqqqqqqqfffff	chr6:129910184-129910448(-)$1	264	226	244	13.1356
[ddddqqqqqqqqdddde	chr15:93485972-93486202(+)$1	230	179	197	13.5702
[ddddqqqqqqqqdddd]	chr6:166788961-166789191(-)$1	230	194	212	13.6785
!!cccqqqqqqqqccc]b	chr5:93018746-93019014(-)$1	268	143	161	14.9905
eeeeeqqqqqqqqeeeee	chr14:105839707-105839985(+)$1	278	32	50	13.5536
d!!bbqqqqqqqqbb22d	chr2:63103124-63103384(+)$1	260	200	218	13.9809
fffffqqqqqqqqfffff	chr6:132043266-132043499(+)$1	233	75	93	13.1356
d[cccqqqqqqqqccc]d	chr10:97921027-97921275(+)$1	248	88	106	14.8766
iiibbqqqqqqqqbb22i	chr11:2677434-2677664(-)$1	230	158	176	13.9758
eeeeeqqqqqqqqeeeee	chr1:219371160-219371471(+)$1	311	238	256	13.5536
!a[bbqqqqqqqqbb]a2	chr3:51440562-51440831(-)$1	269	123	141	14.2678
ddd[aqqqqqqqqa]ddd	chr14:34987706-34987975(-)$1	269	198	216	13.1763
eeebbqqqqqqqqbb]ee	chr6:36050987-36051260(+)$1	273	48	66	13.9295
[ddddqqqqqqqqdddd2	chr15:40916291-40916554(+)$1	263	25	43	13.6919
ff[bbqqqqqqqqbbfff	chr17:8395667-8395926(-)$1	259	108	126	13.5472
"ddddqqqqqqqqdddd3	chr2:152319520-152319790(+)$1	270	202	220	13.7973
eeeeeqqqqqqqqeeeee	chr6:132011794-132012049(+)$1	255	80	98	13.5536
bbcccqqqqqqqqccc]b	chr6:132011977-132012322(+)$1	345	311	329	13.8854
cc[bbqqqqqqqqbbccc	chr8:121781196-121781408(-)$1	212	143	161	13.8916
e[cccqqqqqqqqccc]e	chr15:25235603-25235895(+)$1	292	132	150	15.1195
d!!bbqqqqqqqqbb333	chr7:34430328-34430616(-)$1	288	89	107	14.7501
!!cccqqqqqqqqccc22	chr4:13600892-13601167(-)$1	275	130	148	15.4586
eeeeeqqqqqqqqeeeee	chr17:45037556-45037786(+)$1	230	92	110	13.5536

#otherMatches

#Seq PSSM
cacacuaauugccgugug	chr3:196644622-196644888(+)$1	266	164	182	13.5536
UUUCUUUUGGCUCAGUAA	chr20:40126729-40126968(-)$1	239	34	52	14.0975
ACAGAUUACAUCUUCUGU	chr20:40127834-40128065(-)$1	231	168	186	13.1356
CAGAGGGCAAGGACUCUG	chr16:72992681-72992939(-)$1	258	186	204	13.9306
AGCGCGUGCGGAAGCGUU	chr13:107220062-107220312(-)$1	250	148	166	13.9306
GGAGCUAAGCAAUGUUUU	chr20:45256930-45257189(-)$1	259	156	174	15.2035
UCUUCUCUGCUCUGAAGG	chr1:214470944-214471207(+)$1	263	224	242	13.5536
CUGGCAGAACUACGCCGU	chr2:85768851-85769090(+)$1	239	184	202	13.7973
cauuuaaaaaaaaaaagu	chr7:43670435-43670720(-)$1	285	50	68	14.9183
GUGGCAUCAACAGGCCCA	chr16:90233513-90233731(+)$1	218	2	20	14.9554
gcaagacugccaacaugc	chr2:138751096-138751337(+)$1	241	111	129	13.7149
UAAGUCAAAACUAACUGU	chr10:38407496-38407723(+)$1	227	184	202	15.4586
gucacccaagauugugcc	chr2:63105923-63106183(+)$1	260	171	189	14.8385
uaguugaaaaaugaauau	chr8:38404014-38404313(-)$1	299	66	84	15.5355
guuccaugccaacggagc	chr12:46589413-46589681(-)$1	268	150	168	13.1356
AGUCUGAUGAAGAAGAUU	chr8:17882817-17883050(+)$1	233	80	98	13.9306
AUGAGAAAGGGCCCUUAA	chr16:20718229-20718455(+)$1	226	7	25	14.7789
auucugacacauaagauc	chr18:19391265-19391534(+)$1	269	245	263	14.9932
UGUUUGGAAAUGAGAACA	chr15:56208913-56209159(-)$1	246	111	129	13.5536
GUGACAGUGACAGGUCCG	chr16:24802450-24802723(+)$1	273	145	163	14.9413
AUGCAGAGAGUAAUGCUG	chr5:55433011-55433244(+)$1	233	81	99	12.9079
GACCAAGAAAUUAUGAAG	chr1:214819557-214819784(+)$1	227	187	205	14.7978
UAAUGUAAAAAACUAUCU	chrX:119677499-119677751(-)$1	252	63	81	15.4586
UCGCUGGAGACAGAGCGA	chr6:31856302-31856618(-)$1	316	114	132	13.9059
ucucaaaaaGCAAUGUAG	chr3:37992941-37993188(+)$1	247	226	244	13.8587
CUUUCGAAGACAUGAAAG	chr19:12638424-12638684(-)$1	260	227	245	13.5536
ugguccugcccuugacgu	chr4:66886679-66886936(+)$1	257	117	135	15.4586
AUCCUUCAUUCACAGGUA	chr8:121727396-121727668(-)$1	272	97	115	15.4586
CUUUAGAAACAUGUAGAG	chr3:172110218-172110469(+)$1	251	197	215	13.5536
gauuugggucaaggaagg	chr20:57260966-57261235(+)$1	269	78	96	15.3735
ucacagaguuuuaugugu	chr7:2793179-2793457(-)$1	278	179	197	13.4017
aaagagaaaacauucaaa	chr3:33590426-33590721(-)$1	295	102	120	14.7978
AUGCUAAUUUUGAAGCCC	chr11:47738891-47739125(-)$1	234	78	96	14.8495
UGAGCGACACUGAGCUCG	chr13:45150555-45150887(-)$1	332	143	161	13.9306
AAAAAAUAAAAAAUUUGA	chr2:170493883-170494133(+)$1	250	89	107	15.4586
AAUUAAAUAAUGGUGAGC	chr14:39716485-39716737(+)$1	252	89	107	15.2241
GGGGUGAGCCAGUGCCCA	chr11:57076027-57076303(-)$1	276	223	241	13.8333
GGAAAGCAAGGUAUUUGU	chr18:72343152-72343439(+)$1	287	81	99	14.9291
AUAUCAUCACGGCGAUUA	chr15:102010106-102010352(-)$1	246	178	196	13.9295
AAAACUUAUUUUUGUCCU	chr9:131347937-131348230(+)$1	293	17	35	13.6854
AACAUUGGGAAUCGUGUG	chr20:32676135-32676406(+)$1	271	25	43	14.9096
uccuacaaaucaauagga	chr11:2677704-2677932(-)$1	228	49	67	13.5536
GGUGUUCUGUUAUGCCCU	chrX:70779415-70779627(+)$1	212	21	39	13.5472
ucccagugccagaugugg	chr2:63083363-63083620(+)$1	257	138	156	13.5051
GGCUUGUUUACUAAGGAC	chr14:103170334-103170607(+)$1	273	116	134	14.6138
uucccaucacagagggag	chr6:129910184-129910448(-)$1	264	226	244	13.1356
AGGUGAAAUCCAGUACCU	chr15:93485972-93486202(+)$1	230	179	197	13.5702
agguucuaaaaucaauca	chr6:166788961-166789191(-)$1	230	194	212	13.6785
AAGCUGAAGAAAAAGCGC	chr5:93018746-93019014(-)$1	268	143	161	14.9905
aagugaacccuuccauuu	chr14:105839707-105839985(+)$1	278	32	50	13.5536
ucccagaucaaagugaaa	chr2:63103124-63103384(+)$1	260	200	218	13.9809
UUGAACUAAUUUUUUCAA	chr6:132043266-132043499(+)$1	233	75	93	13.1356
GCAAGUAAAUUUUUUUUC	chr10:97921027-97921275(+)$1	248	88	106	14.8766
gggcugagauucaaguac	chr11:2677434-2677664(-)$1	230	158	176	13.9758
GAAGAUAAUUUGUUUUUC	chr1:219371160-219371471(+)$1	311	238	256	13.5536
ACGCAGGGGAAGAUGGGG	chr3:51440562-51440831(-)$1	269	123	141	14.2678
aucacaacgucaggagau	chr14:34987706-34987975(-)$1	269	198	216	13.1763
accccaagccaagggagg	chr6:36050987-36051260(+)$1	273	48	66	13.9295
GGACUUUACAAGUAGUCA	chr15:40916291-40916554(+)$1	263	25	43	13.6919
GAAGAGAAGAGCAUCUCU	chr17:8395667-8395926(-)$1	259	108	126	13.5472
CAGAAAAUAGACCUUUUA	chr2:152319520-152319790(+)$1	270	202	220	13.7973
UAGAGCAGAAUUUCUUUA	chr6:132011794-132012049(+)$1	255	80	98	13.5536
UGUGGUAGUAUUCCCAGC	chr6:132011977-132012322(+)$1	345	311	329	13.8854
AGGCCAAGAGAGAGGCUG	chr8:121781196-121781408(-)$1	212	143	161	13.8916
UGGAGAUGUCUGCCUUAA	chr15:25235603-25235895(+)$1	292	132	150	15.1195
uaauaucauauuuuaguc	chr7:34430328-34430616(-)$1	288	89	107	14.7501
AGGGGAAUGCUAACUCAC	chr4:13600892-13601167(-)$1	275	130	148	15.4586
gacacacaaugagguguc	chr17:45037556-45037786(+)$1	230	92	110	13.5536

#DB
(((((........)))))	chr3:196644622-196644888(+)$1	1	164	182	13.5536
...((........))...	chr20:40126729-40126968(-)$1	1	34	52	14.0975
(((((........)))))	chr20:40127834-40128065(-)$1	1	168	186	13.1356
(((((........)))))	chr16:72992681-72992939(-)$1	1	186	204	13.9306
(((((........)))))	chr13:107220062-107220312(-)$1	1	148	166	13.9306
(((((........)))..	chr20:45256930-45257189(-)$1	1	156	174	15.2035
(((((........)))))	chr1:214470944-214471207(+)$1	1	224	242	13.5536
.((((........)))).	chr2:85768851-85769090(+)$1	1	184	202	13.7973
(.(((........)))))	chr7:43670435-43670720(-)$1	1	50	68	14.9183
(((((........)))..	chr16:90233513-90233731(+)$1	1	2	20	14.9554
(((.(........).)))	chr2:138751096-138751337(+)$1	1	111	129	13.7149
..(((........)))..	chr10:38407496-38407723(+)$1	1	184	202	15.4586
(((((........)))..	chr2:63105923-63106183(+)$1	1	171	189	14.8385
..(((........)))..	chr8:38404014-38404313(-)$1	1	66	84	15.5355
(((((........)))))	chr12:46589413-46589681(-)$1	1	150	168	13.1356
(((((........)))))	chr8:17882817-17883050(+)$1	1	80	98	13.9306
(((((........))).)	chr16:20718229-20718455(+)$1	1	7	25	14.7789
..(((........)))))	chr18:19391265-19391534(+)$1	1	245	263	14.9932
(((((........)))))	chr15:56208913-56209159(-)$1	1	111	129	13.5536
(.(((........)))).	chr16:24802450-24802723(+)$1	1	145	163	14.9413
))(((........)))..	chr5:55433011-55433244(+)$1	1	81	99	12.9079
...((........))...	chr1:214819557-214819784(+)$1	1	187	205	14.7978
..(((........)))..	chrX:119677499-119677751(-)$1	1	63	81	15.4586
(((((........)))))	chr6:31856302-31856618(-)$1	1	114	132	13.9059
(((((........)).))	chr3:37992941-37993188(+)$1	1	226	244	13.8587
(((((........)))))	chr19:12638424-12638684(-)$1	1	227	245	13.5536
..(((........)))..	chr4:66886679-66886936(+)$1	1	117	135	15.4586
..(((........)))..	chr8:121727396-121727668(-)$1	1	97	115	15.4586
(((((........)))))	chr3:172110218-172110469(+)$1	1	197	215	13.5536
..(((........)))..	chr20:57260966-57261235(+)$1	1	78	96	15.3735
(((((........)))).	chr7:2793179-2793457(-)$1	1	179	197	13.4017
...((........))...	chr3:33590426-33590721(-)$1	1	102	120	14.7978
))(((........)))((	chr11:47738891-47739125(-)$1	1	78	96	14.8495
(((((........)))))	chr13:45150555-45150887(-)$1	1	143	161	13.9306
..(((........)))..	chr2:170493883-170494133(+)$1	1	89	107	15.4586
..(((........))).)	chr14:39716485-39716737(+)$1	1	89	107	15.2241
.((((........)))).	chr11:57076027-57076303(-)$1	1	223	241	13.8333
(.(((........))).)	chr18:72343152-72343439(+)$1	1	81	99	14.9291
(((((........)).))	chr15:102010106-102010352(-)$1	1	178	196	13.9295
((.((........))..)	chr9:131347937-131348230(+)$1	1	17	35	13.6854
(.(((........)))))	chr20:32676135-32676406(+)$1	1	25	43	14.9096
(((((........)))))	chr11:2677704-2677932(-)$1	1	49	67	13.5536
((.((........)))))	chrX:70779415-70779627(+)$1	1	21	39	13.5472
(((((........)).))	chr2:63083363-63083620(+)$1	1	138	156	13.5051
(((((........))).)	chr14:103170334-103170607(+)$1	1	116	134	14.6138
(((((........)))))	chr6:129910184-129910448(-)$1	1	226	244	13.1356
.((((........)))))	chr15:93485972-93486202(+)$1	1	179	197	13.5702
.((((........)))).	chr6:166788961-166789191(-)$1	1	194	212	13.6785
..(((........))).)	chr5:93018746-93019014(-)$1	1	143	161	14.9905
(((((........)))))	chr14:105839707-105839985(+)$1	1	32	50	13.5536
(..((........))..)	chr2:63103124-63103384(+)$1	1	200	218	13.9809
(((((........)))))	chr6:132043266-132043499(+)$1	1	75	93	13.1356
(.(((........))).)	chr10:97921027-97921275(+)$1	1	88	106	14.8766
(((((........))..)	chr11:2677434-2677664(-)$1	1	158	176	13.9758
(((((........)))))	chr1:219371160-219371471(+)$1	1	238	256	13.5536
.(.((........)).).	chr3:51440562-51440831(-)$1	1	123	141	14.2678
(((.(........).)))	chr14:34987706-34987975(-)$1	1	198	216	13.1763
(((((........)).))	chr6:36050987-36051260(+)$1	1	48	66	13.9295
.((((........)))).	chr15:40916291-40916554(+)$1	1	25	43	13.6919
((.((........)))))	chr17:8395667-8395926(-)$1	1	108	126	13.5472
.((((........)))).	chr2:152319520-152319790(+)$1	1	202	220	13.7973
(((((........)))))	chr6:132011794-132012049(+)$1	1	80	98	13.5536
(((((........))).)	chr6:132011977-132012322(+)$1	1	311	329	13.8854
((.((........)))))	chr8:121781196-121781408(-)$1	1	143	161	13.8916
(.(((........))).)	chr15:25235603-25235895(+)$1	1	132	150	15.1195
(..((........))...	chr7:34430328-34430616(-)$1	1	89	107	14.7501
..(((........)))..	chr4:13600892-13601167(-)$1	1	130	148	15.4586
(((((........)))))	chr17:45037556-45037786(+)$1	1	92	110	13.5536

#PSSM
e : 0.20	! : 0.14	f : 0.11	d : 0.11	g : 0.08	c : 0.08	" : 0.08	[ : 0.05	i : 0.02	$ : 0.01	a : 0.01	= : 0.01	b : 0.01	
e : 0.17	d : 0.16	! : 0.16	f : 0.10	c : 0.08	[ : 0.08	g : 0.07	" : 0.05	i : 0.02	$ : 0.01	= : 0.01	a : 0.01	b : 0.01	
c : 0.39	e : 0.17	d : 0.13	[ : 0.07	f : 0.05	g : 0.05	" : 0.02	i : 0.02	! : 0.02	$ : 0.01	
c : 0.36	b : 0.22	e : 0.14	d : 0.10	f : 0.05	g : 0.05	[ : 0.02	i : 0.01	
c : 0.36	b : 0.22	e : 0.14	d : 0.10	f : 0.05	g : 0.05	a : 0.02	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.36	b : 0.22	e : 0.14	d : 0.10	f : 0.05	g : 0.05	a : 0.02	i : 0.01	
c : 0.36	b : 0.22	e : 0.14	d : 0.10	f : 0.05	g : 0.05	] : 0.02	i : 0.01	
c : 0.39	e : 0.14	d : 0.11	f : 0.08	] : 0.07	3 : 0.05	g : 0.05	2 : 0.04	i : 0.01	
e : 0.22	2 : 0.16	d : 0.13	] : 0.11	3 : 0.08	f : 0.08	g : 0.07	c : 0.04	a : 0.02	: : 0.01	i : 0.01	4 : 0.01	
e : 0.25	2 : 0.14	3 : 0.13	f : 0.10	d : 0.10	g : 0.07	c : 0.05	] : 0.04	i : 0.02	b : 0.02	: : 0.01	4 : 0.01	

#score	965.5300329292205
#seq	68
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_UTR_m1_run2.txt

#BEAR
gggggg[bb^^^^^^^^^^^^^^^^^^^^^^^^^bb]	chr7:150070534-150070778(+)$1	244	85	122	42.6503
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrX:56592320-56592538(+)$1	218	115	152	50.1656
e^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:35260163-35260430(+)$1	267	72	109	50.0964
e^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:42153222-42153453(+)$1	231	52	89	50.0964
$$$$ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:50813316-50813617(+)$1	301	208	245	47.1898
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr19:41765809-41766070(+)$1	261	60	97	49.7876
:eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr12:56636149-56636389(-)$1	240	24	61	45.5379
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr16:29910705-29910914(-)$1	209	84	121	49.7657
bb[ddddbb^^^^^^^^^^^^^^^^^^^^^^^bb]dd	chrX:48325656-48325931(-)$1	275	28	65	39.4642
iiiiiii^^^^^^^^^^^^^^^^^^^^^^^^^^^^ii	chr19:36370498-36370784(+)$1	286	64	101	45.6581
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr12:66218606-66218886(+)$1	280	214	251	50.1656
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb	chr20:251527-251785(-)$1	258	165	202	49.8303
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^===	chr2:131807510-131807771(-)$1	261	99	136	50.1730
e"""ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr8:124027149-124027421(-)$1	272	109	146	47.3515
c[eeeee!!a^^^^^^^^^^^^^^^^^^^^^^^^a22	chr7:94298742-94298978(+)$1	236	171	208	42.6470
cc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr20:307502-307754(+)$1	252	193	230	49.3169
e^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:38454799-38455049(+)$1	250	76	113	50.0964
b!!dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr6:44201592-44201893(+)$1	301	92	129	45.6958
:eeeeebb^^^^^^^^^^^^^^^^^^^^^^^^^^bb]	chr16:2011593-2011846(+)$1	253	106	143	43.2214
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr2:219081901-219082259(+)$1	358	219	256	49.7876
cc[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr7:2701593-2701865(+)$1	272	112	149	47.0584
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr19:45542745-45543049(+)$1	304	264	301	50.1656
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ggg	chr17:30808478-30808757(+)$1	279	136	173	50.0175
iiiiiiii^^^^^^^^^^^^^^^^^^^^^^^^^^iii	chr11:64978935-64979207(+)$1	272	190	227	44.1245
::eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr1:27861151-27861507(-)$1	356	146	183	42.8313
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^===	chr11:2160248-2160466(-)$1	218	76	113	50.1730
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ggg	chr19:49128620-49128890(+)$1	270	169	206	50.0175
d^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr6:33267696-33267954(-)$1	258	41	78	49.4727
f"""ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr11:2153839-2154053(-)$1	214	67	104	47.2319
f[eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr11:43365762-43366030(+)$1	268	126	163	44.2829
d"""bb[bb^^^^^^^^^^^^^^^^^^^^^^^^^bb]	chr2:181845493-181845735(+)$1	242	16	53	43.6132
ffffff!!bb^^^^^^^^^^^^^^^^^^^^^^^^bb2	chr15:74701945-74702200(-)$1	255	114	151	40.9481
'''eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr1:161275205-161275421(-)$1	216	91	128	44.2398
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr1:228682151-228682419(+)$1	268	195	232	49.7876
:ggggggg^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr5:149781212-149781432(-)$1	220	77	114	39.1693
iiiiiiii^^^^^^^^^^^^^^^^^^^^^^^^^^iii	chr3:128532599-128532871(+)$1	272	85	122	44.1245
:ggggggg^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr5:149781201-149781412(-)$1	211	57	94	39.1693
e"""ccc^^^^^^^^^^^^^^^^^^^^^^ccc22eee	chr12:53343448-53343743(-)$1	295	144	181	40.0472
ddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr12:57452702-57452953(-)$1	251	56	93	47.8754
hffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr22:29951559-29951837(-)$1	278	177	214	44.6207
e^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:131203695-131203992(-)$1	297	135	172	50.0964
ddd[dddd^^^^^^^^^^^^^^^^^^^^^^^dddddd	chr7:143087760-143088030(+)$1	270	106	143	39.1969
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr19:45323305-45323534(+)$1	229	110	147	50.1656
)))eeeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr2:204305564-204305820(-)$1	256	22	59	41.1202
gg!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr15:74005800-74006060(+)$1	260	48	85	46.8198
g[eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:47130366-47130589(+)$1	223	66	103	46.1897
hhhhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^hhh	chr7:131172530-131172787(+)$1	257	72	109	42.3224
dd!!ccc^^^^^^^^^^^^^^^^^^^^^^^^ccc22d	chr7:129470555-129470840(-)$1	285	110	147	42.0787
d[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb	chr10:72181566-72181849(+)$1	283	38	75	47.4300
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr9:125795746-125796048(+)$1	302	82	119	48.9292
d[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr17:8377927-8378216(-)$1	289	110	147	47.6068
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^===	chr3:183889217-183889464(+)$1	247	90	127	50.1730
g^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ggg	chr7:104753145-104753426(+)$1	281	116	153	49.7367
##ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr17:30264034-30264296(+)$1	262	39	76	44.2952
f^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:72491363-72491646(-)$1	283	171	208	49.9768
##a[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:40827186-40827483(-)$1	297	158	195	47.3658
e^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ee	chr11:203814-204083(-)$1	269	104	141	49.8965
e^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr8:37556559-37556810(+)$1	251	162	199	50.0964
d"""ccc^^^^^^^^^^^^^^^^^^^^^^^^ccc]dd	chr16:29882771-29883006(-)$1	235	134	171	43.0680
d^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr9:139942843-139943119(-)$1	276	196	233	50.0541
e^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:85117489-85117766(-)$1	277	138	175	50.0964

#otherMatches

#Seq PSSM
UCUGCUGUUAAUACUUCCAUCCUCUUCCUUCCCAAAG	chr7:150070534-150070778(+)$1	244	85	122	42.6503
cuuauuuccuuuaguuuccuuccuuAGCCGUUUUGAG	chrX:56592320-56592538(+)$1	218	115	152	50.1656
cucucccuucaccaacccugucccucaccccuguccc	chr6:35260163-35260430(+)$1	267	72	109	50.0964
ACCCCCCUCAGAUCAGCCUCUUCUACAUUUUCAAUUU	chr17:42153222-42153453(+)$1	231	52	89	50.0964
AUCUCGCUCUCACUCUCUACGUAGCCACUCUCCUUCC	chr19:50813316-50813617(+)$1	301	208	245	47.1898
ACUCCACCUUCCCACUUUCCCACCCCACGCCUUAUCC	chr19:41765809-41766070(+)$1	261	60	97	49.7876
AGCUUUUUCCCCACUUCUGUACCCUAUCACCCCUAAA	chr12:56636149-56636389(-)$1	240	24	61	45.5379
CUCUCCCAGUUCCCCAACCCACCCCUUCCCCUCCCCG	chr16:29910705-29910914(-)$1	209	84	121	49.7657
UCCCUGGCCUUGUUUCUCCCCACCCGCUCUUCGGCCC	chrX:48325656-48325931(-)$1	275	28	65	39.4642
ACCUUAAUUUAUUUUUUAAGUUUAUUUAUGGCUCUUU	chr19:36370498-36370784(+)$1	286	64	101	45.6581
uccucuccuccuccuccuccccucuucUCUUUUUGGC	chr12:66218606-66218886(+)$1	280	214	251	50.1656
ccUGUGGUUUUUUCCUCUCUUCUUCCCUUCUUUCUGG	chr20:251527-251785(-)$1	258	165	202	49.8303
UUUCUUCCUCCCUGUAACUUAACCUUUUUUCCCUUUU	chr2:131807510-131807771(-)$1	261	99	136	50.1730
ACACAUGCCUCUCUCCCACUUUUCCCAACCCCCACAU	chr8:124027149-124027421(-)$1	272	109	146	47.3515
CUGUAUUCUCUUCACUCUAUAUUUCUCUCUAUUUGCU	chr7:94298742-94298978(+)$1	236	171	208	42.6470
GCAGCCCAACCCCCACCCCUUCCCCGACACCCAAGCC	chr20:307502-307754(+)$1	252	193	230	49.3169
CUCACCCCCUAACCUCAUCCUAUCUCUUUCUCCAACC	chr3:38454799-38455049(+)$1	250	76	113	50.0964
GAUAUACUCCAUUCUCCCCUGCGCCUCCUCCUCUGUG	chr6:44201592-44201893(+)$1	301	92	129	45.6958
UGCAAAUCUUCCCUCCCCUCCCUUGUGCUCACUUGAC	chr16:2011593-2011846(+)$1	253	106	143	43.2214
UCCCUCCGUCCUUGCCUCCCUUACCCACCCUCACCGG	chr2:219081901-219082259(+)$1	358	219	256	49.7876
CCCGGCCCUUCCCUCCACAGCUCUCCUUCCUCCCGCC	chr7:2701593-2701865(+)$1	272	112	149	47.0584
UCCCUCUACCACCCAGACUCAUACCCAACCCCACGCA	chr19:45542745-45543049(+)$1	304	264	301	50.1656
uuuccucucugucccuucucuuuccccucUCAACCAG	chr17:30808478-30808757(+)$1	279	136	173	50.0175
UGCAGACUAUAAACUAUAACCACUAGCUCGACACAGU	chr11:64978935-64979207(+)$1	272	190	227	44.1245
CCUCUGCCUCCCACCCUGCCCCCUACACCCCCUGCAG	chr1:27861151-27861507(-)$1	356	146	183	42.8313
AUCUACCUCAACUCCCCCCAUCCCCGCUUCGCCCGAG	chr11:2160248-2160466(-)$1	218	76	113	50.1730
auuucaauccuuucucuuguuuaucuauuccuaugaa	chr19:49128620-49128890(+)$1	270	169	206	50.0175
CUAUUCCUUUCCUCCAAUGAACCAAACGCCUCCCGCC	chr6:33267696-33267954(-)$1	258	41	78	49.4727
GCUUUAAACACCCUUCACAUACCCUCCCCCCAAAUUA	chr11:2153839-2154053(-)$1	214	67	104	47.2319
UCCCUUAUCCCUCACCCUUCCCCUUCCCUUUCCUAAG	chr11:43365762-43366030(+)$1	268	126	163	44.2829
GCCCGGCACUGCACAACCCCCUCCGACUUUCAAUGUU	chr2:181845493-181845735(+)$1	242	16	53	43.6132
UGGGGUGAGGGAAACGGGAGAAUGAAGGAGAAAACUG	chr15:74701945-74702200(-)$1	255	114	151	40.9481
UCCCCAGGCAAUUGUAUUCUCCCCCACCUUCACCCCU	chr1:161275205-161275421(-)$1	216	91	128	44.2398
UUAUCUCUAGCUCUUUCCCUCCUCCCAUUUCCUUUAG	chr1:228682151-228682419(+)$1	268	195	232	49.7876
UCUCUUCCCUUUCCCCAGCAUCACUCCCCAAGGAAGA	chr5:149781212-149781432(-)$1	220	77	114	39.1693
UGGUCUUUUUACCCCCCCUUUCCCCUCCCUCCUUGAA	chr3:128532599-128532871(+)$1	272	85	122	44.1245
UCUCUUCCCUUUCCCCAGCAUCACUCCCCAAGGAAGA	chr5:149781201-149781412(-)$1	211	57	94	39.1693
UCAACCCUGUCCCCUUCCCCCUCUCUCCUGGGAAAGA	chr12:53343448-53343743(-)$1	295	144	181	40.0472
UAUUCAACUUUCAAUUCCAUCUUAAAAAACAUUUGUA	chr12:57452702-57452953(-)$1	251	56	93	47.8754
AGGCCUUCAUUUAUCUUCUAAAAUUCCUCAUCUCAAG	chr22:29951559-29951837(-)$1	278	177	214	44.6207
AUCACCUCCCCUUCAUUCAUUCCUUCCCUUAUCCUCA	chr6:131203695-131203992(-)$1	297	135	172	50.0964
AUGUCUAGCCCCUCCCAUUUCCAACCCCUCCCUAGCA	chr7:143087760-143088030(+)$1	270	106	143	39.1969
auccccauccucccccaaccuccagccccaacaccCA	chr19:45323305-45323534(+)$1	229	110	147	50.1656
CAAUGGAGUUGUUccaccacccccucccccuccucca	chr2:204305564-204305820(-)$1	256	22	59	41.1202
GUCUAGAAGCUGUUUCCUUUCCCCUCCUUCCUCCUCU	chr15:74005800-74006060(+)$1	260	48	85	46.8198
CAGGGAGUUUUAUAGCCCUUUUCUACUUUCCUCCCCU	chr17:47130366-47130589(+)$1	223	66	103	46.1897
GAAGGGAUCUUAACCAUCACAAGUUUUUACCCUCUUC	chr7:131172530-131172787(+)$1	257	72	109	42.3224
GCCCUGUCUCCUCCCUUCCACCUUUCUCCUUGCAUUG	chr7:129470555-129470840(-)$1	285	110	147	42.0787
GCAGUCCCCAUUACAGUCUCCACCUCCCCGUCUUCCU	chr10:72181566-72181849(+)$1	283	38	75	47.4300
uuuuucuuuccccucccccuuucuuccuuuucccaag	chr9:125795746-125796048(+)$1	302	82	119	48.9292
GUGGGUGUGACUCCUUCAUUUUUCCUUCUCCCUUCCC	chr17:8377927-8378216(-)$1	289	110	147	47.6068
CUUUUCUUUCUUUUUUCCUCCCCCAAUUUACCCUGGG	chr3:183889217-183889464(+)$1	247	90	127	50.1730
GCCCCUCAUCACCAUCCACCACCCCAUCCAUCCACAG	chr7:104753145-104753426(+)$1	281	116	153	49.7367
CUGAGGAGACACUUUUUUUUuccucccuccuucccuc	chr17:30264034-30264296(+)$1	262	39	76	44.2952
GCAAACACUCCACCCUCCACCUUCCAUUUUCCCCCAC	chr15:72491363-72491646(-)$1	283	171	208	49.9768
CUGUGACUUCUCUCUCUCCCUGUCUUCACUUUGUUCA	chr19:40827186-40827483(-)$1	297	158	195	47.3658
UCACCCUUCCCCUCCCCUCCUCCUUCCUUCCACACAG	chr11:203814-204083(-)$1	269	104	141	49.8965
UUuuuuguuuuguuuuguuuuguuuuUUCCUUUGUUG	chr8:37556559-37556810(+)$1	251	162	199	50.0964
CCCUGGAGAUCCUACAGUAAAUAAACCAGCAUCCUGC	chr16:29882771-29883006(-)$1	235	134	171	43.0680
uccaccccACCACUGUCUUCUCCAUCCUUCCACCCCA	chr9:139942843-139943119(-)$1	276	196	233	50.0541
CCUUUCCCUCACUUCCCCUUUUAUAAUGUCACACAAA	chrX:85117489-85117766(-)$1	277	138	175	50.0964

#DB
((((((.((.........................)).	chr7:150070534-150070778(+)$1	1	85	122	42.6503
..................................)))	chrX:56592320-56592538(+)$1	1	115	152	50.1656
(....................................	chr6:35260163-35260430(+)$1	1	72	109	50.0964
(....................................	chr17:42153222-42153453(+)$1	1	52	89	50.0964
....(((..............................	chr19:50813316-50813617(+)$1	1	208	245	47.1898
..................................)))	chr19:41765809-41766070(+)$1	1	60	97	49.7876
.(((((............................)))	chr12:56636149-56636389(-)$1	1	24	61	45.5379
..................................)))	chr16:29910705-29910914(-)$1	1	84	121	49.7657
((.((((((.......................)).))	chrX:48325656-48325931(-)$1	1	28	65	39.4642
(((((((............................))	chr19:36370498-36370784(+)$1	1	64	101	45.6581
..................................)))	chr12:66218606-66218886(+)$1	1	214	251	50.1656
...................................))	chr20:251527-251785(-)$1	1	165	202	49.8303
..................................)))	chr2:131807510-131807771(-)$1	1	99	136	50.1730
(...(((...........................)))	chr8:124027149-124027421(-)$1	1	109	146	47.3515
(.(((((..(........................)..	chr7:94298742-94298978(+)$1	1	171	208	42.6470
((................................)))	chr20:307502-307754(+)$1	1	193	230	49.3169
(....................................	chr3:38454799-38455049(+)$1	1	76	113	50.0964
(..((((...........................)))	chr6:44201592-44201893(+)$1	1	92	129	45.6958
.(((((((..........................)).	chr16:2011593-2011846(+)$1	1	106	143	43.2214
..................................)))	chr2:219081901-219082259(+)$1	1	219	256	49.7876
((.(((............................)))	chr7:2701593-2701865(+)$1	1	112	149	47.0584
..................................)))	chr19:45542745-45543049(+)$1	1	264	301	50.1656
..................................)))	chr17:30808478-30808757(+)$1	1	136	173	50.0175
((((((((..........................)))	chr11:64978935-64979207(+)$1	1	190	227	44.1245
..(((((..........................))))	chr1:27861151-27861507(-)$1	1	146	183	42.8313
..................................)))	chr11:2160248-2160466(-)$1	1	76	113	50.1730
..................................)))	chr19:49128620-49128890(+)$1	1	169	206	50.0175
(.................................)))	chr6:33267696-33267954(-)$1	1	41	78	49.4727
(...(((...........................)))	chr11:2153839-2154053(-)$1	1	67	104	47.2319
(.(((((..........................))))	chr11:43365762-43366030(+)$1	1	126	163	44.2829
(...((.((.........................)).	chr2:181845493-181845735(+)$1	1	16	53	43.6132
((((((..((........................)).	chr15:74701945-74702200(-)$1	1	114	151	40.9481
...(((((..........................)))	chr1:161275205-161275421(-)$1	1	91	128	44.2398
..................................)))	chr1:228682151-228682419(+)$1	1	195	232	49.7876
.(((((((.......................))))))	chr5:149781212-149781432(-)$1	1	77	114	39.1693
((((((((..........................)))	chr3:128532599-128532871(+)$1	1	85	122	44.1245
.(((((((.......................))))))	chr5:149781201-149781412(-)$1	1	57	94	39.1693
(...(((......................)))..)))	chr12:53343448-53343743(-)$1	1	144	181	40.0472
(((...............................)))	chr12:57452702-57452953(-)$1	1	56	93	47.8754
)((((((...........................)))	chr22:29951559-29951837(-)$1	1	177	214	44.6207
(....................................	chr6:131203695-131203992(-)$1	1	135	172	50.0964
(((.((((.......................))))))	chr7:143087760-143088030(+)$1	1	106	143	39.1969
..................................)))	chr19:45323305-45323534(+)$1	1	110	147	50.1656
...(((((........................)))))	chr2:204305564-204305820(-)$1	1	22	59	41.1202
((..(((...........................)))	chr15:74005800-74006060(+)$1	1	48	85	46.8198
(.(((((..............................	chr17:47130366-47130589(+)$1	1	66	103	46.1897
(((((((...........................)))	chr7:131172530-131172787(+)$1	1	72	109	42.3224
((..(((........................)))..)	chr7:129470555-129470840(-)$1	1	110	147	42.0787
(.((...............................))	chr10:72181566-72181849(+)$1	1	38	75	47.4300
((................................)))	chr9:125795746-125796048(+)$1	1	82	119	48.9292
(.(((.............................)))	chr17:8377927-8378216(-)$1	1	110	147	47.6068
..................................)))	chr3:183889217-183889464(+)$1	1	90	127	50.1730
(.................................)))	chr7:104753145-104753426(+)$1	1	116	153	49.7367
..((((((..........................)))	chr17:30264034-30264296(+)$1	1	39	76	44.2952
(....................................	chr15:72491363-72491646(-)$1	1	171	208	49.9768
..(.(((..............................	chr19:40827186-40827483(-)$1	1	158	195	47.3658
(..................................))	chr11:203814-204083(-)$1	1	104	141	49.8965
(....................................	chr8:37556559-37556810(+)$1	1	162	199	50.0964
(...(((........................))).))	chr16:29882771-29883006(-)$1	1	134	171	43.0680
(....................................	chr9:139942843-139943119(-)$1	1	196	233	50.0541
(....................................	chrX:85117489-85117766(-)$1	1	138	175	50.0964

#PSSM
^ : 0.22	e : 0.16	d : 0.14	: : 0.08	g : 0.06	f : 0.06	i : 0.04	c : 0.04	b : 0.03	h : 0.03	# : 0.03	$ : 0.01	' : 0.01	) : 0.01	
^ : 0.40	" : 0.08	[ : 0.08	g : 0.06	e : 0.04	i : 0.04	d : 0.04	c : 0.03	f : 0.03	# : 0.03	$ : 0.01	b : 0.01	! : 0.01	: : 0.01	' : 0.01	) : 0.01	h : 0.01	
^ : 0.44	e : 0.09	" : 0.08	g : 0.04	i : 0.04	! : 0.04	f : 0.04	[ : 0.03	d : 0.03	$ : 0.01	' : 0.01	) : 0.01	h : 0.01	b : 0.01	c : 0.01	a : 0.01	
^ : 0.45	e : 0.13	" : 0.08	g : 0.04	i : 0.04	f : 0.04	d : 0.03	c : 0.03	[ : 0.03	! : 0.03	$ : 0.01	h : 0.01	b : 0.01	
^ : 0.47	c : 0.16	e : 0.13	g : 0.04	d : 0.04	i : 0.04	f : 0.04	b : 0.01	h : 0.01	
^ : 0.49	c : 0.14	e : 0.13	g : 0.04	d : 0.04	i : 0.04	f : 0.04	b : 0.01	h : 0.01	
^ : 0.52	c : 0.13	e : 0.09	d : 0.04	i : 0.04	[ : 0.03	g : 0.03	f : 0.03	b : 0.01	! : 0.01	h : 0.01	
^ : 0.77	b : 0.06	! : 0.03	i : 0.03	e : 0.03	g : 0.03	d : 0.01	f : 0.01	
^ : 0.91	b : 0.06	! : 0.01	
^ : 0.96	a : 0.01	b : 0.01	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.98	c : 0.01	
^ : 0.98	c : 0.01	
^ : 0.90	c : 0.04	g : 0.03	d : 0.01	
^ : 0.86	g : 0.03	c : 0.03	b : 0.01	2 : 0.01	d : 0.01	e : 0.01	
^ : 0.83	e : 0.04	g : 0.03	c : 0.03	b : 0.01	2 : 0.01	d : 0.01	
^ : 0.24	c : 0.16	e : 0.11	f : 0.08	d : 0.08	g : 0.08	b : 0.06	= : 0.04	] : 0.03	i : 0.03	a : 0.01	h : 0.01	2 : 0.01	
^ : 0.18	c : 0.16	e : 0.13	d : 0.11	b : 0.09	f : 0.08	g : 0.08	i : 0.04	= : 0.04	2 : 0.03	h : 0.01	
^ : 0.18	c : 0.16	e : 0.13	d : 0.13	f : 0.08	g : 0.08	] : 0.04	i : 0.04	= : 0.04	b : 0.03	2 : 0.03	h : 0.01	

#score	2844.3854350513743
#seq	61
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_CDS_m3_run1.txt

#BEAR
ffffffooooooffffff	chr4:6863455-6863786(+)$1	331	62	80	12.4944
hhffffffmmmmffffff	chr19:5719961-5720213(-)$1	252	173	191	7.8403
ggggggoooooogggggg	chr19:47778061-47778339(+)$1	278	152	170	9.8713
b[fffffflllffffff]	chr1:33236040-33236288(+)$1	248	45	63	8.1947
gggggggnnnnngggggg	chr11:6566360-6566632(+)$1	272	0	18	7.6554
ee[cccooooooccceee	chr22:50016963-50017204(-)$1	241	220	238	8.9904
ffffffooooooffffff	chr9:139904818-139905104(-)$1	286	37	55	12.4944
eeefffffflllffffff	chr11:66392569-66392798(+)$1	229	149	167	7.9666
[ffffffnnnnnffffff	chr22:22277411-22277647(-)$1	236	46	64	10.2990
dffffffnnnnnffffff	chr6:3259324-3259594(+)$1	270	181	199	10.0009
ffffffnnnnnffffff:	chr12:132401763-132402074(+)$1	311	235	253	8.2176
eeeebboooooobb]eee	chr3:45730811-45731099(+)$1	288	137	155	7.7007
[ffffffnnnnnffffff	chr14:31495152-31495415(-)$1	263	92	110	10.2990
e[bb[aooooooa]bb]e	chr16:845040-845284(+)$1	244	166	184	7.9993
fffff[ammmmaffffff	chr16:28878125-28878389(+)$1	264	225	243	8.9575
bb[cccooooooccc]bb	chr1:226030068-226030375(-)$1	307	83	101	8.6031
ffffffooooooffffff	chr16:725959-726250(+)$1	291	220	238	12.4944
bb[cccoooooocccbbc	chr19:49964744-49965010(+)$1	266	141	159	8.5145
gggg[aooooooa]gggg	chr19:47778364-47778599(+)$1	235	22	40	9.6712
ffffffffmmmmffffff	chr17:80016442-80016717(-)$1	275	108	126	8.6681
ffffffooooooffffff	chr9:140323182-140323436(+)$1	254	222	240	12.4944
ffffffooooooffffff	chr11:637257-637535(+)$1	278	204	222	12.4944
ffffffooooooffffff	chr17:46131916-46132230(+)$1	314	3	21	12.4944
ffff[aooooooafffff	chr17:79866767-79867103(-)$1	336	66	84	11.6625
fffffflllfffffffff	chr11:639288-639567(+)$1	279	23	41	7.9859
gggggggnnnnngggggg	chr11:61197015-61197330(-)$1	315	66	84	7.6554
[a[cccooooooccc]a]	chr7:100174751-100175019(-)$1	268	5	23	9.2368
dbbcccooooooccc]bb	chr7:77166748-77166983(+)$1	235	71	89	8.2779
[ffffffnnnnnffffff	chr14:31495101-31495352(-)$1	251	29	47	10.2990
]bbcccoooooocccfff	chr10:101379863-101380186(-)$1	323	217	235	9.6416
iiii[aooooooa]iiii	chr16:89367079-89367343(-)$1	264	130	148	8.9759
ggggggoooooogggggg	chr19:2425958-2426272(-)$1	314	231	249	9.8713
ffffffffmmmmffffff	chr10:72503652-72503958(+)$1	306	227	245	8.6681
[ffffffnnnnnffffff	chr20:60897710-60897990(-)$1	280	227	245	10.2990
ffffffooooooffffff	chr21:45735929-45736232(+)$1	303	258	276	12.4944
:ffffffnnnnnffffff	chr21:47612608-47612826(-)$1	218	183	201	9.1390
ffffffooooooffffff	chr21:47612200-47612495(-)$1	295	156	174	12.4944
cc!!bboooooobb]ccc	chr19:1104611-1104910(+)$1	299	1	19	7.9346
ffffffooooooffffff	chr22:50016771-50017013(-)$1	242	20	38	12.4944

#otherMatches

#Seq PSSM
UUGUAGAAAUGCCUGCAG	chr4:6863455-6863786(+)$1	331	62	80	12.4944
CAGGAGCGUGGUUGCUCC	chr19:5719961-5720213(-)$1	252	173	191	7.8403
GCCCCGGAGGCGCGGGGC	chr19:47778061-47778339(+)$1	278	152	170	9.8713
GGUGGCUCUGAGGGCCAG	chr1:33236040-33236288(+)$1	248	45	63	8.1947
UCUUGCCCAACUGGUGAG	chr11:6566360-6566632(+)$1	272	0	18	7.6554
CUGCUGGAUUUGCAGAGG	chr22:50016963-50017204(-)$1	241	220	238	8.9904
GCUCUGGGCAUGUAGGGU	chr9:139904818-139905104(-)$1	286	37	55	12.4944
GCUGGCUCCUAUGGGGCC	chr11:66392569-66392798(+)$1	229	149	167	7.9666
UGGUCUUCCUCAGGGACC	chr22:22277411-22277647(-)$1	236	46	64	10.2990
CCCCAGGCUUCUCUUGGG	chr6:3259324-3259594(+)$1	270	181	199	10.0009
UGCUGGGGGCACCAGCAG	chr12:132401763-132402074(+)$1	311	235	253	8.2176
UUGUGCAGGAUGGCGACG	chr3:45730811-45731099(+)$1	288	137	155	7.7007
ACCUGGGGGGAACCUGGG	chr14:31495152-31495415(-)$1	263	92	110	10.2990
CUGGCCUUCGAUGACCUG	chr16:845040-845284(+)$1	244	166	184	7.9993
CAAGGUGAGGCCCCUUGG	chr16:28878125-28878389(+)$1	264	225	243	8.9575
CAACAAUAGAAUUUGCUG	chr1:226030068-226030375(-)$1	307	83	101	8.6031
GGGAUCAAGCAGGGUCCC	chr16:725959-726250(+)$1	291	220	238	12.4944
GGUGGCCCUCGUGCCCCC	chr19:49964744-49965010(+)$1	266	141	159	8.5145
GCGCCGUCCCCUCCGUGU	chr19:47778364-47778599(+)$1	235	22	40	9.6712
GGGCAGGGUGGUCUCUGC	chr17:80016442-80016717(-)$1	275	108	126	8.6681
GGCCAUGUCCAAGUGGCC	chr9:140323182-140323436(+)$1	254	222	240	12.4944
CGCUCGUGUGCGUGAGCG	chr11:637257-637535(+)$1	278	204	222	12.4944
GGAGGGGAUUGGCUCUCU	chr17:46131916-46132230(+)$1	314	3	21	12.4944
GUAGAGAGACAGCCUGCC	chr17:79866767-79867103(-)$1	336	66	84	11.6625
CUGGCUCACAGCCGGGCC	chr11:639288-639567(+)$1	279	23	41	7.9859
GCCUUUUGAGGGAGGAGG	chr11:61197015-61197330(-)$1	315	66	84	7.6554
AGGCGGGAGGAGCCGGCA	chr7:100174751-100175019(-)$1	268	5	23	9.2368
ggcggcgggggggccAGC	chr7:77166748-77166983(+)$1	235	71	89	8.2779
ACCUGGGGGGAACCUGGG	chr14:31495101-31495352(-)$1	251	29	47	10.2990
ggcggcggggaggccggg	chr10:101379863-101380186(-)$1	323	217	235	9.6416
CUGGUCUCUGGUGCCUGG	chr16:89367079-89367343(-)$1	264	130	148	8.9759
CCGGGUAUAGACACCUGG	chr19:2425958-2426272(-)$1	314	231	249	9.8713
GCGGGGGUGACAACUCCC	chr10:72503652-72503958(+)$1	306	227	245	8.6681
ACUGCCUGUGCAAGGCGG	chr20:60897710-60897990(-)$1	280	227	245	10.2990
ACGGGAAGCCCAUCUCGU	chr21:45735929-45736232(+)$1	303	258	276	12.4944
aucugugccacacacaga	chr21:47612608-47612826(-)$1	218	183	201	9.1390
CUGCUUGAGCAGGAGCAG	chr21:47612200-47612495(-)$1	295	156	174	12.4944
gcACCUUGGCCUAGCGCG	chr19:1104611-1104910(+)$1	299	1	19	7.9346
AUCCAGGGCCUGCUGGAU	chr22:50016771-50017013(-)$1	242	20	38	12.4944

#DB
((((((......))))))	chr4:6863455-6863786(+)$1	1	62	80	12.4944
))((((((....))))))	chr19:5719961-5720213(-)$1	1	173	191	7.8403
((((((......))))))	chr19:47778061-47778339(+)$1	1	152	170	9.8713
(.((((((...)))))).	chr1:33236040-33236288(+)$1	1	45	63	8.1947
(((((((.....))))))	chr11:6566360-6566632(+)$1	1	0	18	7.6554
((.(((......))))))	chr22:50016963-50017204(-)$1	1	220	238	8.9904
((((((......))))))	chr9:139904818-139905104(-)$1	1	37	55	12.4944
)))((((((...))))))	chr11:66392569-66392798(+)$1	1	149	167	7.9666
.((((((.....))))))	chr22:22277411-22277647(-)$1	1	46	64	10.2990
)((((((.....))))))	chr6:3259324-3259594(+)$1	1	181	199	10.0009
((((((.....)))))).	chr12:132401763-132402074(+)$1	1	235	253	8.2176
((((((......)).)))	chr3:45730811-45731099(+)$1	1	137	155	7.7007
.((((((.....))))))	chr14:31495152-31495415(-)$1	1	92	110	10.2990
(.((.(......).)).)	chr16:845040-845284(+)$1	1	166	184	7.9993
(((((.(....)))))))	chr16:28878125-28878389(+)$1	1	225	243	8.9575
((.(((......))).))	chr1:226030068-226030375(-)$1	1	83	101	8.6031
((((((......))))))	chr16:725959-726250(+)$1	1	220	238	12.4944
((.(((......))))))	chr19:49964744-49965010(+)$1	1	141	159	8.5145
((((.(......).))))	chr19:47778364-47778599(+)$1	1	22	40	9.6712
((((((((....))))))	chr17:80016442-80016717(-)$1	1	108	126	8.6681
((((((......))))))	chr9:140323182-140323436(+)$1	1	222	240	12.4944
((((((......))))))	chr11:637257-637535(+)$1	1	204	222	12.4944
((((((......))))))	chr17:46131916-46132230(+)$1	1	3	21	12.4944
((((.(......))))))	chr17:79866767-79867103(-)$1	1	66	84	11.6625
((((((...))))))(((	chr11:639288-639567(+)$1	1	23	41	7.9859
(((((((.....))))))	chr11:61197015-61197330(-)$1	1	66	84	7.6554
.(.(((......))).).	chr7:100174751-100175019(-)$1	1	5	23	9.2368
((((((......))).))	chr7:77166748-77166983(+)$1	1	71	89	8.2779
.((((((.....))))))	chr14:31495101-31495352(-)$1	1	29	47	10.2990
.))(((......)))(((	chr10:101379863-101380186(-)$1	1	217	235	9.6416
((((.(......).))))	chr16:89367079-89367343(-)$1	1	130	148	8.9759
((((((......))))))	chr19:2425958-2426272(-)$1	1	231	249	9.8713
))((((((....))))))	chr10:72503652-72503958(+)$1	1	227	245	8.6681
.((((((.....))))))	chr20:60897710-60897990(-)$1	1	227	245	10.2990
((((((......))))))	chr21:45735929-45736232(+)$1	1	258	276	12.4944
.((((((.....))))))	chr21:47612608-47612826(-)$1	1	183	201	9.1390
((((((......))))))	chr21:47612200-47612495(-)$1	1	156	174	12.4944
((..((......)).)))	chr19:1104611-1104910(+)$1	1	1	19	7.9346
((((((......))))))	chr22:50016771-50017013(-)$1	1	20	38	12.4944

#PSSM
f : 0.38	g : 0.12	[ : 0.12	e : 0.10	b : 0.07	d : 0.05	h : 0.02	] : 0.02	i : 0.02	: : 0.02	c : 0.02	
f : 0.53	g : 0.12	b : 0.10	e : 0.07	[ : 0.05	h : 0.02	a : 0.02	i : 0.02	c : 0.02	
f : 0.58	g : 0.12	[ : 0.10	b : 0.07	e : 0.05	i : 0.02	! : 0.02	
f : 0.61	c : 0.15	g : 0.12	e : 0.02	b : 0.02	i : 0.02	! : 0.02	
f : 0.58	c : 0.15	g : 0.10	[ : 0.10	b : 0.05	
f : 0.56	c : 0.15	g : 0.10	a : 0.10	b : 0.05	[ : 0.02	
o : 0.58	f : 0.28	g : 0.05	n : 0.02	a : 0.02	l : 0.02	
o : 0.58	n : 0.23	f : 0.12	m : 0.02	l : 0.02	
o : 0.58	n : 0.23	m : 0.10	l : 0.05	f : 0.02	
o : 0.58	n : 0.23	m : 0.10	l : 0.05	f : 0.02	
o : 0.58	n : 0.23	m : 0.10	l : 0.05	f : 0.02	
o : 0.58	n : 0.20	m : 0.07	f : 0.07	l : 0.02	a : 0.02	
f : 0.58	c : 0.15	g : 0.10	a : 0.10	b : 0.05	
f : 0.61	c : 0.15	g : 0.10	] : 0.07	b : 0.05	
f : 0.61	c : 0.15	g : 0.12	] : 0.05	b : 0.02	i : 0.02	
f : 0.64	g : 0.12	] : 0.07	e : 0.05	b : 0.05	i : 0.02	c : 0.02	
f : 0.64	g : 0.12	b : 0.07	e : 0.05	] : 0.02	a : 0.02	i : 0.02	c : 0.02	
f : 0.58	g : 0.12	e : 0.07	] : 0.05	b : 0.05	c : 0.05	: : 0.02	i : 0.02	

#score	381.54836603794365
#seq	39
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_transcript_m3_run2.txt

#BEAR
ggg"""ddddpppppppdddd4444	chr7:153104624-153104921(-)$1	297	62	87	17.1905
==========ppppppp========	chr20:33614907-33615242(-)$1	335	295	320	16.5883
===gggggggpppppppgggggggE	chr2:168739713-168739974(-)$1	261	232	257	15.2308
b[ccc[cccapppppppa]cccccc	chr11:2689062-2689347(-)$1	285	211	236	15.9435
ggggga[cccpppppppccc]a444	chr1:3655602-3655993(-)$1	391	71	96	16.5304
[dddd[ddddpppppppdddd]ddd	chr9:139711930-139712223(+)$1	293	63	88	16.2860
d!!bb[ddddpppppppddddbbdd	chr3:195419160-195419427(+)$1	267	98	123	16.0495
ggggg[ddddpppppppdddd]ggg	chr11:65267702-65267909(+)$1	207	87	112	17.7353
gggggg[cccpppppppccc333gg	chr17:20788480-20788719(+)$1	239	188	213	17.0788
!dddd"""bbpppppppbb333ddd	chr9:136137595-136137854(-)$1	259	203	228	14.6045
dd:gggggggpppppppggggggg:	chr8:91323870-91324160(+)$1	290	58	83	13.8461
c$$$$$ddddpppppppddddcccb	chr7:119509796-119510089(-)$1	293	177	202	15.7618
cc!!ddddbbpppppppbb]dddd2	chr22:48193985-48194316(+)$1	331	140	165	14.7686
fff####cccpppppppccc4444f	chr1:246284051-246284350(-)$1	299	195	220	16.0013
ggggg[ddddpppppppdddd]ggg	chr11:65267709-65267920(+)$1	211	80	105	17.7353
::ccc"""bbpppppppbb333ccc	chr3:6589979-6590244(+)$1	265	1	26	13.9036
bb[bb!!cccpppppppccc]bbbb	chr3:6591135-6591425(+)$1	290	234	259	15.3436
cc[bb[ddddrrrrrrrrrdddd]b	chr11:5482700-5483012(-)$1	312	117	142	12.2532
ccbb[eeeeepppppppeeeee]bb	chr19:28935253-28935516(-)$1	263	189	214	14.7620
eeeeddddbbpppppppbb]ddddE	chr11:5443360-5443645(-)$1	285	163	188	13.3728
bb[bb!!cccpppppppccc]bbbb	chr3:6591331-6591571(+)$1	240	38	63	15.3436
eeccc[ddddpppppppdddd]ccc	chr1:29504170-29504443(-)$1	273	147	172	17.2049
iiii[eeeeepppppppeeeeeiii	chr22:50001185-50001471(-)$1	286	117	142	15.6896
Biiiiiiiiipppppppiiiiiiii	chr3:42680266-42680503(+)$1	237	170	195	15.2487
::bb"""cccpppppppccc333bb	chr10:70333083-70333369(+)$1	286	2	27	14.5123
++dddd[cccpppppppccc22ddd	chr19:34875444-34875713(+)$1	269	117	142	13.8037
gggg[eeeeepppppppeeeee]gg	chr1:203769764-203769994(+)$1	230	149	174	15.7634
eeee!!ddddrrrrrrrrrdddd22	chr8:91018539-91018879(+)$1	340	12	37	11.9281
gggg[a!!bbpppppppbb22aggg	chr19:34876277-34876514(+)$1	237	164	189	15.3646
::bb!!ddddpppppppdddd22bb	chr11:65349429-65349694(+)$1	265	35	60	14.4878
cccgggggggpppppppggggggg2	chr7:153097827-153098088(-)$1	261	145	170	15.8506
ggggg!!cccpppppppccc]gggg	chr15:27349517-27349828(+)$1	311	97	122	17.1780
ggggg[ddddpppppppdddd]ggg	chr11:65267736-65267943(+)$1	207	53	78	17.7353
!a[gggggggpppppppggggggg]	chr1:231173421-231173697(-)$1	276	211	236	16.0859
eeeee[ddddpppppppdddd]eee	chr2:55253818-55254056(-)$1	238	136	161	16.2910
[gggggggbbpppppppbb22gggg	chr18:75695132-75695361(-)$1	229	175	200	15.2806
ggggg[ddddpppppppdddd]ggg	chr11:65267669-65267873(+)$1	204	120	145	17.7353
ggggg[ddddrrrrrrrrrddddgg	chr1:2324188-2324454(+)$1	266	14	39	12.8700
eeccc[ddddpppppppdddd]ccc	chr1:29504112-29504363(-)$1	251	67	92	17.2049
bb!!ffffffpppppppffffff22	chr8:6577861-6578120(+)$1	259	12	37	14.0210
fffbb[ddddpppppppdddd]bb]	chr16:20698212-20698430(+)$1	218	115	140	16.2638
"ffffffcccpppppppccc]ffff	chr12:46319944-46320217(-)$1	273	80	105	15.1501
ggggg[ddddpppppppdddd]ggg	chr11:65267697-65267902(+)$1	205	92	117	17.7353
eeee[eeeeepppppppeeeee333	chr2:170493659-170493936(+)$1	277	62	87	15.3187
cc"""eeeeepppppppeeeee]cc	chr8:130523932-130524237(-)$1	305	186	211	15.4822
c!!gggggggpppppppggggggg2	chr21:45453347-45453663(+)$1	316	101	126	16.0700
!cccffffffpppppppffffff]c	chr1:214813814-214814104(+)$1	290	41	66	14.5359
c[a[ffffffpppppppffffff]a	chr22:20913167-20913444(+)$1	277	123	148	14.4958
e!!bb[ddddpppppppddddbb22	chr5:135814001-135814250(+)$1	249	195	220	16.1978
dddccc[cccpppppppcccccc]d	chr1:153609270-153609584(+)$1	314	41	66	15.5245
eeccc[ddddpppppppdddd]ccc	chr1:29503958-29504312(-)$1	354	16	41	17.2049

#otherMatches

#Seq PSSM
uuucacauguaacgagaacauuuau	chr7:153104624-153104921(-)$1	297	62	87	17.1905
gaucaggaacaagacgaguuccuga	chr20:33614907-33615242(-)$1	335	295	320	16.5883
ucugguuuuuguuuuaaaaaggccu	chr2:168739713-168739974(-)$1	261	232	257	15.2308
ugaagaugccucaagcugcgcacuu	chr11:2689062-2689347(-)$1	285	211	236	15.9435
UUGAUUGUGUGGGUUAGAUAGAGGU	chr1:3655602-3655993(-)$1	391	71	96	16.5304
gacgugggcugaggggaggccgacg	chr9:139711930-139712223(+)$1	293	63	88	16.2860
AGCCACAGGAGAAAGUAUCCUUGUC	chr3:195419160-195419427(+)$1	267	98	123	16.0495
CUUAAUGUUUUUGCAUUGGACUUUG	chr11:65267702-65267909(+)$1	207	87	112	17.7353
ucauaugucaggggucauggggaau	chr17:20788480-20788719(+)$1	239	188	213	17.0788
AUUACAAGGCGGGACAGGUAAAGUG	chr9:136137595-136137854(-)$1	259	203	228	14.6045
AUAUUUUUCUAAUCCAAAGAGAAAA	chr8:91323870-91324160(+)$1	290	58	83	13.8461
cauuaucaugagaacaacauggagg	chr7:119509796-119510089(-)$1	293	177	202	15.7618
ccagcucucugguuagaggaagaga	chr22:48193985-48194316(+)$1	331	140	165	14.7686
ugcccuucuggaucucacagccuag	chr1:246284051-246284350(-)$1	299	195	220	16.0013
CUUAAUGUUUUUGCAUUGGACUUUG	chr11:65267709-65267920(+)$1	211	80	105	17.7353
aagccaaaagaacaaagcuggaggc	chr3:6589979-6590244(+)$1	265	1	26	13.9036
ugacagagggcaaccaacccaugca	chr3:6591135-6591425(+)$1	290	234	259	15.3436
ugacagagacagaacuccagucugu	chr11:5482700-5483012(-)$1	312	117	142	12.2532
CUGAGAGUUAAAGCAAAUGACUGUU	chr19:28935253-28935516(-)$1	263	189	214	14.7620
CCGUGAGGAUGAAGUAGAUGCCUUC	chr11:5443360-5443645(-)$1	285	163	188	13.3728
ugacagagggcaaccaacccaugca	chr3:6591331-6591571(+)$1	240	38	63	15.3436
GUGUAAGCAAGAGUUCAUUGCCUAC	chr1:29504170-29504443(-)$1	273	147	172	17.2049
aagugucuaCGACAGAAGUGGGACU	chr22:50001185-50001471(-)$1	286	117	142	15.6896
CAGUUUACUAAAGAUGAUAGUAAAC	chr3:42680266-42680503(+)$1	237	170	195	15.2487
UUGGCAGGCUCAAAACAAGCGACCC	chr10:70333083-70333369(+)$1	286	2	27	14.5123
GAAGGCAGGUGGAUAGAGCCAGGUC	chr19:34875444-34875713(+)$1	269	117	142	13.8037
AAAACUUCCCCCACCAUGGGAAAUU	chr1:203769764-203769994(+)$1	230	149	174	15.7634
cugagaccugaaagaugaguaggag	chr8:91018539-91018879(+)$1	340	12	37	11.9281
AAACACAGGUGUGUAGAACAGGGUU	chr19:34876277-34876514(+)$1	237	164	189	15.3646
AGGCGACAGGGGUGAUGCCUGAGGC	chr11:65349429-65349694(+)$1	265	35	60	14.4878
GGCUUGGAGUCCUCACCACUCCAGA	chr7:153097827-153098088(-)$1	261	145	170	15.8506
GUUUUGUGUAUGGGUUUUAUUGAAA	chr15:27349517-27349828(+)$1	311	97	122	17.1780
CUUAAUGUUUUUGCAUUGGACUUUG	chr11:65267736-65267943(+)$1	207	53	78	17.7353
CUGGAACUGGGAGUGCGCCAGUUUG	chr1:231173421-231173697(-)$1	276	211	236	16.0859
GAGAGUAGUAAUGAUGAUACUUCUU	chr2:55253818-55254056(-)$1	238	136	161	16.2910
AAGUUAGCCCACAGGGAGGUUGCUG	chr18:75695132-75695361(-)$1	229	175	200	15.2806
CUUAAUGUUUUUGCAUUGGACUUUG	chr11:65267669-65267873(+)$1	204	120	145	17.7353
GCCGUAUGCCUGAGGUGACGGCGAC	chr1:2324188-2324454(+)$1	266	14	39	12.8700
GUGUAAGCAAGAGUUCAUUGCCUAC	chr1:29504112-29504363(-)$1	251	67	92	17.2049
GUUAUUUUUAAAGGUAAUGAAAACU	chr8:6577861-6578120(+)$1	259	12	37	14.0210
UGCCCCCAUcucuuucugguguggu	chr16:20698212-20698430(+)$1	218	115	140	16.2638
AGUUUGUGGAACAGCAAUCCUAUAA	chr12:46319944-46320217(-)$1	273	80	105	15.1501
CUUAAUGUUUUUGCAUUGGACUUUG	chr11:65267697-65267902(+)$1	205	92	117	17.7353
UCACACAGAAAAGAAAAUUCUGAGA	chr2:170493659-170493936(+)$1	277	62	87	15.3187
guaauggaccauuuggaggucuggc	chr8:130523932-130524237(-)$1	305	186	211	15.4822
GAAACUAUGUAggcccggcauggug	chr21:45453347-45453663(+)$1	316	101	126	16.0700
UUCUCAGCUUACUGGGCAAGUUGAA	chr1:214813814-214814104(+)$1	290	41	66	14.5359
UGGAGAgccgggcacaguggcucac	chr22:20913167-20913444(+)$1	277	123	148	14.4958
cagauacagaacaagcauuugauaa	chr5:135814001-135814250(+)$1	249	195	220	16.1978
CAGUAGACUUUUAUGUUAAGCUGUC	chr1:153609270-153609584(+)$1	314	41	66	15.5245
GUGUAAGCAAGAGUUCAUUGCCUAC	chr1:29503958-29504312(-)$1	354	16	41	17.2049

#DB
(((...((((.......))))....	chr7:153104624-153104921(-)$1	1	62	87	17.1905
((((((((((.......))))))))	chr20:33614907-33615242(-)$1	1	295	320	16.5883
)))(((((((.......))))))))	chr2:168739713-168739974(-)$1	1	232	257	15.2308
(.(((.((((.......).))))))	chr11:2689062-2689347(-)$1	1	211	236	15.9435
((((((.(((.......))).)...	chr1:3655602-3655993(-)$1	1	71	96	16.5304
.((((.((((.......)))).)))	chr9:139711930-139712223(+)$1	1	63	88	16.2860
(..((.((((.......))))))))	chr3:195419160-195419427(+)$1	1	98	123	16.0495
(((((.((((.......)))).)))	chr11:65267702-65267909(+)$1	1	87	112	17.7353
((((((.(((.......)))...))	chr17:20788480-20788719(+)$1	1	188	213	17.0788
.((((...((.......))...)))	chr9:136137595-136137854(-)$1	1	203	228	14.6045
)).(((((((.......))))))).	chr8:91323870-91324160(+)$1	1	58	83	13.8461
(.....((((.......))))))))	chr7:119509796-119510089(-)$1	1	177	202	15.7618
((..((((((.......)).)))).	chr22:48193985-48194316(+)$1	1	140	165	14.7686
(((....(((.......)))....)	chr1:246284051-246284350(-)$1	1	195	220	16.0013
(((((.((((.......)))).)))	chr11:65267709-65267920(+)$1	1	80	105	17.7353
..(((...((.......))...)))	chr3:6589979-6590244(+)$1	1	1	26	13.9036
((.((..(((.......))).))))	chr3:6591135-6591425(+)$1	1	234	259	15.3436
((.((.((((.........)))).)	chr11:5482700-5483012(-)$1	1	117	142	12.2532
))((.(((((.......))))).))	chr19:28935253-28935516(-)$1	1	189	214	14.7620
))))((((((.......)).)))))	chr11:5443360-5443645(-)$1	1	163	188	13.3728
((.((..(((.......))).))))	chr3:6591331-6591571(+)$1	1	38	63	15.3436
(((((.((((.......)))).)))	chr1:29504170-29504443(-)$1	1	147	172	17.2049
((((.(((((.......))))))))	chr22:50001185-50001471(-)$1	1	117	142	15.6896
)(((((((((.......))))))))	chr3:42680266-42680503(+)$1	1	170	195	15.2487
..((...(((.......)))...))	chr10:70333083-70333369(+)$1	1	2	27	14.5123
..((((.(((.......)))..)))	chr19:34875444-34875713(+)$1	1	117	142	13.8037
((((.(((((.......))))).))	chr1:203769764-203769994(+)$1	1	149	174	15.7634
((((..((((.........))))..	chr8:91018539-91018879(+)$1	1	12	37	11.9281
((((.(..((.......))..))))	chr19:34876277-34876514(+)$1	1	164	189	15.3646
..((..((((.......))))..))	chr11:65349429-65349694(+)$1	1	35	60	14.4878
((((((((((.......))))))).	chr7:153097827-153098088(-)$1	1	145	170	15.8506
(((((..(((.......))).))))	chr15:27349517-27349828(+)$1	1	97	122	17.1780
(((((.((((.......)))).)))	chr11:65267736-65267943(+)$1	1	53	78	17.7353
.(.(((((((.......))))))).	chr1:231173421-231173697(-)$1	1	211	236	16.0859
(((((.((((.......)))).)))	chr2:55253818-55254056(-)$1	1	136	161	16.2910
.(((((((((.......))..))))	chr18:75695132-75695361(-)$1	1	175	200	15.2806
(((((.((((.......)))).)))	chr11:65267669-65267873(+)$1	1	120	145	17.7353
(((((.((((.........))))))	chr1:2324188-2324454(+)$1	1	14	39	12.8700
(((((.((((.......)))).)))	chr1:29504112-29504363(-)$1	1	67	92	17.2049
((..((((((.......))))))..	chr8:6577861-6578120(+)$1	1	12	37	14.0210
(((((.((((.......)))).)).	chr16:20698212-20698430(+)$1	1	115	140	16.2638
.(((((((((.......))).))))	chr12:46319944-46320217(-)$1	1	80	105	15.1501
(((((.((((.......)))).)))	chr11:65267697-65267902(+)$1	1	92	117	17.7353
((((.(((((.......)))))...	chr2:170493659-170493936(+)$1	1	62	87	15.3187
((...(((((.......))))).))	chr8:130523932-130524237(-)$1	1	186	211	15.4822
(..(((((((.......))))))).	chr21:45453347-45453663(+)$1	1	101	126	16.0700
.(((((((((.......)))))).)	chr1:214813814-214814104(+)$1	1	41	66	14.5359
(.(.((((((.......)))))).)	chr22:20913167-20913444(+)$1	1	123	148	14.4958
(..((.((((.......))))))..	chr5:135814001-135814250(+)$1	1	195	220	16.1978
((((((.(((.......)))))).)	chr1:153609270-153609584(+)$1	1	41	66	15.5245
(((((.((((.......)))).)))	chr1:29503958-29504312(-)$1	1	16	41	17.2049

#PSSM
g : 0.23	c : 0.15	e : 0.15	b : 0.07	d : 0.05	! : 0.05	: : 0.05	= : 0.03	[ : 0.03	f : 0.03	i : 0.01	B : 0.01	+ : 0.01	" : 0.01	
g : 0.25	e : 0.13	c : 0.11	d : 0.07	! : 0.05	f : 0.05	: : 0.05	b : 0.05	= : 0.03	[ : 0.03	i : 0.03	$ : 0.01	+ : 0.01	a : 0.01	
g : 0.25	c : 0.13	! : 0.09	d : 0.07	[ : 0.07	e : 0.07	f : 0.05	b : 0.05	= : 0.03	i : 0.03	: : 0.01	$ : 0.01	" : 0.01	a : 0.01	
g : 0.33	b : 0.17	c : 0.13	e : 0.07	d : 0.05	" : 0.03	! : 0.03	i : 0.03	= : 0.01	$ : 0.01	# : 0.01	f : 0.01	[ : 0.01	
g : 0.29	c : 0.11	b : 0.11	d : 0.09	[ : 0.09	f : 0.07	" : 0.05	! : 0.03	= : 0.01	$ : 0.01	# : 0.01	i : 0.01	e : 0.01	
[ : 0.31	g : 0.13	! : 0.09	e : 0.09	" : 0.07	f : 0.07	d : 0.05	a : 0.03	= : 0.01	$ : 0.01	# : 0.01	i : 0.01	c : 0.01	
d : 0.41	g : 0.11	e : 0.09	[ : 0.07	! : 0.07	f : 0.07	" : 0.05	= : 0.01	c : 0.01	# : 0.01	i : 0.01	
d : 0.41	c : 0.21	g : 0.11	e : 0.09	f : 0.05	" : 0.03	= : 0.01	i : 0.01	! : 0.01	
d : 0.37	c : 0.21	b : 0.11	g : 0.09	e : 0.09	f : 0.05	= : 0.01	i : 0.01	
d : 0.37	c : 0.19	b : 0.11	g : 0.09	e : 0.09	f : 0.05	= : 0.01	a : 0.01	i : 0.01	
p : 0.94	r : 0.05	
p : 0.94	r : 0.05	
p : 0.94	r : 0.05	
p : 0.94	r : 0.05	
p : 0.94	r : 0.05	
p : 0.94	r : 0.05	
p : 0.94	r : 0.05	
d : 0.31	c : 0.19	b : 0.11	g : 0.09	e : 0.09	r : 0.05	f : 0.05	= : 0.01	a : 0.01	i : 0.01	
d : 0.31	c : 0.19	b : 0.11	g : 0.09	e : 0.09	r : 0.05	f : 0.05	= : 0.01	] : 0.01	i : 0.01	
d : 0.37	c : 0.21	g : 0.09	e : 0.09	f : 0.05	3 : 0.03	] : 0.03	2 : 0.03	= : 0.01	i : 0.01	
d : 0.41	g : 0.09	] : 0.09	e : 0.09	3 : 0.07	2 : 0.05	f : 0.05	c : 0.03	= : 0.01	4 : 0.01	i : 0.01	
] : 0.21	g : 0.13	d : 0.09	e : 0.09	b : 0.07	3 : 0.07	f : 0.07	c : 0.05	4 : 0.03	a : 0.03	2 : 0.03	= : 0.01	i : 0.01	
g : 0.25	d : 0.15	c : 0.13	b : 0.09	f : 0.07	4 : 0.05	3 : 0.05	] : 0.05	i : 0.03	= : 0.01	2 : 0.01	e : 0.01	
g : 0.31	c : 0.13	d : 0.11	b : 0.11	] : 0.07	4 : 0.05	2 : 0.05	i : 0.03	= : 0.01	e : 0.01	f : 0.01	3 : 0.01	
g : 0.21	c : 0.13	b : 0.13	2 : 0.11	d : 0.09	4 : 0.03	E : 0.03	f : 0.03	i : 0.03	] : 0.03	= : 0.01	: : 0.01	e : 0.01	3 : 0.01	a : 0.01	

#score	794.5663499608886
#seq	51
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_UTR_m1_run1.txt

#BEAR
ffffffuuuuuuuuuuuuffffff2	chr6:7882553-7882823(-)$1	270	163	188	22.7926
eeeeevvvvvvvvvvvvveeeee44	chr5:149937020-149937271(+)$1	251	75	100	23.6383
hhh[ccctttttttttttccc]hhh	chr7:107260375-107260627(+)$1	252	55	80	22.0983
ee[ddddtttttttttttdddd]ee	chr8:97346232-97346544(+)$1	312	72	97	22.4925
ee!!bbvvvvvvvvvvvvvbb]eee	chr2:162881245-162881551(-)$1	306	260	285	23.2366
gggggguuuuuuuuuuuuggggggg	chr15:77239676-77239959(+)$1	283	118	143	24.1967
!!eeeeettttttttttteeeee22	chr1:154574509-154574823(-)$1	314	285	310	22.8102
i[dddduuuuuuuuuuuudddd]ii	chr22:19035870-19036146(-)$1	276	90	115	23.8845
iiiiiiwwwwwwwwwwwwwwiiiii	chr11:494577-494869(-)$1	292	58	83	22.9181
ddd[ccctttttttttttccc]ddd	chr2:97499087-97499345(+)$1	258	27	52	22.4148
:eeeeettttttttttteeeeeggg	chr16:16235922-16236147(+)$1	225	173	198	21.8978
f[ddddtttttttttttdddd333f	chr17:44248473-44248730(-)$1	257	42	67	22.1346
hhhhhhwwwwwwwwwwwwwwhhhhh	chr8:38848444-38848695(-)$1	251	54	79	20.6204
ggg[ccctttttttttttccc]ggg	chr3:14527707-14527987(+)$1	280	210	235	23.3996
======vvvvvvvvvvvvv======	chr5:112349620-112350001(+)$1	381	72	97	24.4572
eeeyyyyyyyyyyyyyyyyeeeee:	chr1:236140067-236140311(-)$1	244	169	194	20.4948
dd[ddddtttttttttttdddd]dd	chr5:177022560-177022818(+)$1	258	132	157	21.8922
:eeeeeuuuuuuuuuuuueeeee::	chr17:76987905-76988169(-)$1	264	229	254	21.3255
======vvvvvvvvvvvvv======	chr10:105360951-105361193(-)$1	242	170	195	24.4572
iiiiiiuuuuuuuuuuuuiiiiiii	chr12:74934401-74934654(+)$1	253	74	99	24.2676
e!!ddddtttttttttttdddd]ee	chr11:61564344-61564729(+)$1	385	20	45	22.4754
##ddddvvvvvvvvvvvvvdddd44	chrX:135957316-135957532(-)$1	216	44	69	23.1969
fff[bbwwwwwwwwwwwwwwbb]ff	chr16:11963665-11963932(-)$1	267	36	61	21.3305
eeeeevvvvvvvvvvvvveeeee]d	chr4:74285870-74286073(+)$1	203	74	99	23.6340
ggggggvvvvvvvvvvvvvgggggg	chr14:62214019-62214292(+)$1	273	168	193	24.1356
ffffffvvvvvvvvvvvvvffffff	chr2:208628259-208628505(-)$1	246	91	116	22.8178
ddddbbvvvvvvvvvvvvvbb]ddd	chr6:64418943-64419210(+)$1	267	38	63	22.2680
ggggggvvvvvvvvvvvvvgggggg	chr17:47004269-47004520(+)$1	251	93	118	24.1356
c[cccvvvvvvvvvvvvvccc]ccc	chr1:55315568-55315813(-)$1	245	2	27	23.2829
"""ccctttttttttttccc333ff	chr12:9317785-9318058(-)$1	273	52	77	22.2739
##dddduuuuuuuuuuuudddd444	chr17:79804779-79805004(-)$1	225	25	50	23.3567
#cccyyyyyyyyyyyyyyyyccc44	chr14:21168498-21168747(+)$1	249	116	141	21.0816
ecccyyyyyyyyyyyyyyyyccc22	chr8:17426294-17426521(+)$1	227	10	35	20.7868
feeeeettttttttttteeeee444	chrX:77082161-77082431(-)$1	270	123	148	22.6179
e[dddduuuuuuuuuuuudddd]ee	chr2:216229516-216229731(-)$1	215	35	60	23.7480
"eeeeevvvvvvvvvvvvveeeee3	chr12:110776985-110777213(+)$1	228	43	68	24.3089
ddd[ccctttttttttttcccdddd	chr1:150938299-150938522(-)$1	223	5	30	22.2579
===yyyyyyyyyyyyyyyy======	chr13:113977290-113977532(+)$1	242	203	228	21.6264
eeeyyyyyyyyyyyyyyyyeeeee2	chr2:85545632-85545840(-)$1	208	160	185	21.3258
ggggggwwwwwwwwwwwwwwggggg	chr14:21484888-21485277(-)$1	389	313	338	22.8664
ffffffwwwwwwwwwwwwwwfffff	chr17:12046030-12046323(+)$1	293	187	212	21.6338
gggggguuuuuuuuuuuuggggggg	chrX:114884616-114884879(+)$1	263	236	261	24.1967
ggggggwwwwwwwwwwwwwwggggg	chr4:129190728-129190980(-)$1	252	19	44	22.8664
eee[ccctttttttttttccc]eee	chr1:76260166-76260449(+)$1	283	184	209	23.3523
ggggggtttttttttttgggggggd	chr8:22277535-22277792(+)$1	257	105	130	22.4988
ccc[bbtttttttttttbb]cccee	chr2:26413882-26414128(-)$1	246	155	180	21.5505
[fffffftttttttttttffffff3	chr14:54416637-54416893(-)$1	256	61	86	21.8910
!eeeeewwwwwwwwwwwwwweeeee	chr15:72499380-72499588(-)$1	208	98	123	22.9942
i[dddduuuuuuuuuuuudddd]ii	chr22:19035946-19036179(-)$1	233	123	148	23.8845
eee!!bbtttttttttttbb22eee	chr4:74272245-74272447(+)$1	202	6	31	21.7518
(eeeeeuuuuuuuuuuuueeeeegg	chr20:30157198-30157424(+)$1	226	103	128	23.6934
:eeeeeuuuuuuuuuuuueeeee::	chr3:195781889-195782146(-)$1	257	85	110	21.3255
[bb[bbvvvvvvvvvvvvvbb]bb]	chr7:91741478-91741716(-)$1	238	55	80	21.9638
ffffffuuuuuuuuuuuufffffff	chr17:27383835-27384094(+)$1	259	191	216	22.8272
"eeeeeyyyyyyyyyyyyyyyyeee	chr9:5786517-5786760(-)$1	243	143	168	21.1224
gggggguuuuuuuuuuuuggggggg	chr12:26628139-26628410(-)$1	271	16	41	24.1967
======wwwwwwwwwwwwww=====	chr12:51112485-51112702(+)$1	217	114	139	23.1486
e[dddduuuuuuuuuuuuddddeee	chr6:38120538-38120803(+)$1	265	172	197	23.7185
iiiiiiuuuuuuuuuuuuiiiiiii	chr11:44266640-44266947(+)$1	307	198	223	24.2676
ffff[awwwwwwwwwwwwwwa]fff	chr20:60889622-60889863(-)$1	241	39	64	22.0181
"eeeeeuuuuuuuuuuuueeeeebb	chr17:76850239-76850521(-)$1	282	148	173	23.7980
feeeeeuuuuuuuuuuuueeeeeEE	chr20:44526546-44526778(+)$1	232	114	139	22.1144
[eeeeewwwwwwwwwwwwwweeeee	chr5:150409604-150409877(-)$1	273	104	129	22.9926
ddddwwwwwwwwwwwwwwdddd]bb	chr20:43127515-43127748(-)$1	233	155	180	20.8080
ggggggtttttttttttggggggge	chr4:129191865-129192150(-)$1	285	18	43	22.5921
eeeeevvvvvvvvvvvvveeeee]d	chr4:74285884-74286087(+)$1	203	60	85	23.6340
eeeeevvvvvvvvvvvvveeeee]d	chr4:74285887-74286091(+)$1	204	57	82	23.6340

#otherMatches

#Seq PSSM
AACAUGUCUUUAGUUCCUCAUGUUA	chr6:7882553-7882823(-)$1	270	163	188	22.7926
gccugaccaucuuccucccaggccc	chr5:149937020-149937271(+)$1	251	75	100	23.6383
acuauauaaacuaagauaauacaGU	chr7:107260375-107260627(+)$1	252	55	80	22.0983
UAACAGCCUUUAGAAGCCGCUGCUG	chr8:97346232-97346544(+)$1	312	72	97	22.4925
UGCUUCUAGAGCAACAUGUGAUcag	chr2:162881245-162881551(-)$1	306	260	285	23.2366
GACAAAAAUGGUGAUGGAUUUGUUA	chr15:77239676-77239959(+)$1	283	118	143	24.1967
UUGUGGAAAAUCGCGGUCUCCACUC	chr1:154574509-154574823(-)$1	314	285	310	22.8102
GGAGCCUGAGAUGUGUGUGGCUGCU	chr22:19035870-19036146(-)$1	276	90	115	23.8845
CGGGCCCAUGCCUCCCUUCUGGCCU	chr11:494577-494869(-)$1	292	58	83	22.9181
GGGAUCGUCAUGCUGCAUCGAAUCC	chr2:97499087-97499345(+)$1	258	27	52	22.4148
AGCUGGAAGGUACUAUGCCAGUCCU	chr16:16235922-16236147(+)$1	225	173	198	21.8978
UUUCAGUGCUUUAGAUUCUGACACA	chr17:44248473-44248730(-)$1	257	42	67	22.1346
GGGGAAUCAAAUUUGUUCCUUUCCU	chr8:38848444-38848695(-)$1	251	54	79	20.6204
UUUACAGACAUUUACCACCUGCGGA	chr3:14527707-14527987(+)$1	280	210	235	23.3996
GGCUCUCUAAUCUUCCUCUGGAGUU	chr5:112349620-112350001(+)$1	381	72	97	24.4572
CCAUGACCUCACCCCUCCUUGGUUU	chr1:236140067-236140311(-)$1	244	169	194	20.4948
GUGUUACUGAUCAGGGAUGUGAGGC	chr5:177022560-177022818(+)$1	258	132	157	21.8922
UUCGCAUAGGCAGUGAUUUGCGAUU	chr17:76987905-76988169(-)$1	264	229	254	21.3255
CUUGGGGGUGUCUUCUGAGCUCAAG	chr10:105360951-105361193(-)$1	242	170	195	24.4572
ACUUCCUAACAAUGUCUUGGAAGUG	chr12:74934401-74934654(+)$1	253	74	99	24.2676
CCUAGACUGUGCUUUUCUGUCUUGU	chr11:61564344-61564729(+)$1	385	20	45	22.4754
ACCACGAGAUUAUACUUACCGUGAU	chrX:135957316-135957532(-)$1	216	44	69	23.1969
AACGAGGUAACUCAUAUUUGCUGGU	chr16:11963665-11963932(-)$1	267	36	61	21.3305
AACAUCUGUCAUGUCUUUGUGUUCA	chr4:74285870-74286073(+)$1	203	74	99	23.6340
GAAAAAUUUUUACACCUUUUUUUUC	chr14:62214019-62214292(+)$1	273	168	193	24.1356
GUAGUUGUAUAUUUUAAUGAACUGC	chr2:208628259-208628505(-)$1	246	91	116	22.8178
AUUACUAAUGUCAUAAUAAAGAUAA	chr6:64418943-64419210(+)$1	267	38	63	22.2680
AGUCCCUCUUGAUGCGCCUGGGACU	chr17:47004269-47004520(+)$1	251	93	118	24.1356
AAGGUAUUUUGGAAUCACACCCUCC	chr1:55315568-55315813(-)$1	245	2	27	23.2829
CUUACAUUCAUUAUUUCUGUUCUUC	chr12:9317785-9318058(-)$1	273	52	77	22.2739
UCAGACCCAGUAACUUAAGUUUAUA	chr17:79804779-79805004(-)$1	225	25	50	23.3567
UUUCUUUUUCCUGAAACUUUGAAUC	chr14:21168498-21168747(+)$1	249	116	141	21.0816
ucuacaaaaaaaacaaaaauuagcu	chr8:17426294-17426521(+)$1	227	10	35	20.7868
AGGCCAAAUCUAUGCUGUGGUUCUU	chrX:77082161-77082431(-)$1	270	123	148	22.6179
GUUAUGAUGAUGGGAAGACAUACCA	chr2:216229516-216229731(-)$1	215	35	60	23.7480
agguaaaAAAGUUCAGAAAUUGCCA	chr12:110776985-110777213(+)$1	228	43	68	24.3089
AGGAGAGUUCUCUGCAUCCUCCCUC	chr1:150938299-150938522(-)$1	223	5	30	22.2579
GGCGUCUCUAAUGUCUGCAGCUCAA	chr13:113977290-113977532(+)$1	242	203	228	21.6264
AGGCCAUUUUCUGAAAACCCCUGUU	chr2:85545632-85545840(-)$1	208	160	185	21.3258
UUCUGCUAUAACAAUAAACUGUAGA	chr14:21484888-21485277(-)$1	389	313	338	22.8664
UGCCAUUACAGAACCAAAUCGUGGC	chr17:12046030-12046323(+)$1	293	187	212	21.6338
GUAUAUAUGUAGGAAUUAAUGUACU	chrX:114884616-114884879(+)$1	263	236	261	24.1967
GAUAGAUACUAAAUUAUUAUUUUAU	chr4:129190728-129190980(-)$1	252	19	44	22.8664
AGUUGCAUAGUAUAGUUUUGCCAUU	chr1:76260166-76260449(+)$1	283	184	209	23.3523
GCUGGGCACCUUGGACCUCCAGCUG	chr8:22277535-22277792(+)$1	257	105	130	22.4988
CCAAGACCAUCUCUCCCUCCUGGUG	chr2:26413882-26414128(-)$1	246	155	180	21.5505
CCAUGCUGUACCUGGAUGAGUAUGA	chr14:54416637-54416893(-)$1	256	61	86	21.8910
AGCCUGUCAUCUGUGCUACUCAGGC	chr15:72499380-72499588(-)$1	208	98	123	22.9942
GGAGCCUGAGAUGUGUGUGGCUGCU	chr22:19035946-19036179(-)$1	233	123	148	23.8845
AACCUAUACCCAUACAUGAUUUGUU	chr4:74272245-74272447(+)$1	202	6	31	21.7518
UUGUGGACUGAUUUUGCCUCACAUU	chr20:30157198-30157424(+)$1	226	103	128	23.6934
UUCGUGAUUAAACUAACCCAUGAUG	chr3:195781889-195782146(-)$1	257	85	110	21.3255
AAUUGUAACUCGGGGCCUAACUAUA	chr7:91741478-91741716(-)$1	238	55	80	21.9638
CUCUUUGCUGGUAUAUUUGAAGAGC	chr17:27383835-27384094(+)$1	259	191	216	22.8272
AGCCUGUGUCAAGCUGUUUCUUCAG	chr9:5786517-5786760(-)$1	243	143	168	21.1224
AUGUUGUUUCUGGCAUUUCAAUAUU	chr12:26628139-26628410(-)$1	271	16	41	24.1967
AGGUAAGUGUUCCUGAAGUGUUACC	chr12:51112485-51112702(+)$1	217	114	139	23.1486
CUCCCACAGAGCUGGAAAUGGGGGG	chr6:38120538-38120803(+)$1	265	172	197	23.7185
CCAAAAUUUCUCUCAUUCUUUUGGU	chr11:44266640-44266947(+)$1	307	198	223	24.2676
UCAGGGAGGGUGGUGGUGGACGCUG	chr20:60889622-60889863(-)$1	241	39	64	22.0181
UUUCUCGGUAAUGAUAAGGAGAAUC	chr17:76850239-76850521(-)$1	282	148	173	23.7980
GCCCUGGUUAGUGAAGUACGGGGAC	chr20:44526546-44526778(+)$1	232	114	139	22.1144
ACAGAAGAGAAUGAUGGAUAUUCUG	chr5:150409604-150409877(-)$1	273	104	129	22.9926
gaugggaaaaugagacgacauugcu	chr20:43127515-43127748(-)$1	233	155	180	20.8080
UAUAUUGAAGACAACCAGAUAUGUA	chr4:129191865-129192150(-)$1	285	18	43	22.5921
AACAUCUGUCAUGUCUUUGUGUUCA	chr4:74285884-74286087(+)$1	203	60	85	23.6340
AACAUCUGUCAUGUCUUUGUGUUCA	chr4:74285887-74286091(+)$1	204	57	82	23.6340

#DB
((((((............)))))).	chr6:7882553-7882823(-)$1	1	163	188	22.7926
(((((.............)))))..	chr5:149937020-149937271(+)$1	1	75	100	23.6383
(((.(((...........))).)))	chr7:107260375-107260627(+)$1	1	55	80	22.0983
((.((((...........)))).))	chr8:97346232-97346544(+)$1	1	72	97	22.4925
((..((.............)).)))	chr2:162881245-162881551(-)$1	1	260	285	23.2366
((((((............)))))))	chr15:77239676-77239959(+)$1	1	118	143	24.1967
..(((((...........)))))..	chr1:154574509-154574823(-)$1	1	285	310	22.8102
(.((((............)))).))	chr22:19035870-19036146(-)$1	1	90	115	23.8845
((((((..............)))))	chr11:494577-494869(-)$1	1	58	83	22.9181
(((.(((...........))).)))	chr2:97499087-97499345(+)$1	1	27	52	22.4148
.(((((...........)))))(((	chr16:16235922-16236147(+)$1	1	173	198	21.8978
(.((((...........))))...)	chr17:44248473-44248730(-)$1	1	42	67	22.1346
((((((..............)))))	chr8:38848444-38848695(-)$1	1	54	79	20.6204
(((.(((...........))).)))	chr3:14527707-14527987(+)$1	1	210	235	23.3996
((((((.............))))))	chr5:112349620-112350001(+)$1	1	72	97	24.4572
(((................))))).	chr1:236140067-236140311(-)$1	1	169	194	20.4948
((.((((...........)))).))	chr5:177022560-177022818(+)$1	1	132	157	21.8922
.(((((............)))))..	chr17:76987905-76988169(-)$1	1	229	254	21.3255
((((((.............))))))	chr10:105360951-105361193(-)$1	1	170	195	24.4572
((((((............)))))))	chr12:74934401-74934654(+)$1	1	74	99	24.2676
(..((((...........)))).))	chr11:61564344-61564729(+)$1	1	20	45	22.4754
..((((.............))))..	chrX:135957316-135957532(-)$1	1	44	69	23.1969
(((.((..............)).))	chr16:11963665-11963932(-)$1	1	36	61	21.3305
(((((.............))))).)	chr4:74285870-74286073(+)$1	1	74	99	23.6340
((((((.............))))))	chr14:62214019-62214292(+)$1	1	168	193	24.1356
((((((.............))))))	chr2:208628259-208628505(-)$1	1	91	116	22.8178
((((((.............)).)))	chr6:64418943-64419210(+)$1	1	38	63	22.2680
((((((.............))))))	chr17:47004269-47004520(+)$1	1	93	118	24.1356
(.(((.............))).)))	chr1:55315568-55315813(-)$1	1	2	27	23.2829
...(((...........)))...))	chr12:9317785-9318058(-)$1	1	52	77	22.2739
..((((............))))...	chr17:79804779-79805004(-)$1	1	25	50	23.3567
.(((................)))..	chr14:21168498-21168747(+)$1	1	116	141	21.0816
((((................)))..	chr8:17426294-17426521(+)$1	1	10	35	20.7868
((((((...........)))))...	chrX:77082161-77082431(-)$1	1	123	148	22.6179
(.((((............)))).))	chr2:216229516-216229731(-)$1	1	35	60	23.7480
.(((((.............))))).	chr12:110776985-110777213(+)$1	1	43	68	24.3089
(((.(((...........)))))))	chr1:150938299-150938522(-)$1	1	5	30	22.2579
(((................))))))	chr13:113977290-113977532(+)$1	1	203	228	21.6264
(((................))))).	chr2:85545632-85545840(-)$1	1	160	185	21.3258
((((((..............)))))	chr14:21484888-21485277(-)$1	1	313	338	22.8664
((((((..............)))))	chr17:12046030-12046323(+)$1	1	187	212	21.6338
((((((............)))))))	chrX:114884616-114884879(+)$1	1	236	261	24.1967
((((((..............)))))	chr4:129190728-129190980(-)$1	1	19	44	22.8664
(((.(((...........))).)))	chr1:76260166-76260449(+)$1	1	184	209	23.3523
((((((...........))))))))	chr8:22277535-22277792(+)$1	1	105	130	22.4988
(((.((...........)).)))))	chr2:26413882-26414128(-)$1	1	155	180	21.5505
.((((((...........)))))).	chr14:54416637-54416893(-)$1	1	61	86	21.8910
.(((((..............)))))	chr15:72499380-72499588(-)$1	1	98	123	22.9942
(.((((............)))).))	chr22:19035946-19036179(-)$1	1	123	148	23.8845
(((..((...........))..)))	chr4:74272245-74272447(+)$1	1	6	31	21.7518
.(((((............)))))))	chr20:30157198-30157424(+)$1	1	103	128	23.6934
.(((((............)))))..	chr3:195781889-195782146(-)$1	1	85	110	21.3255
.((.((.............)).)).	chr7:91741478-91741716(-)$1	1	55	80	21.9638
((((((............))))))(	chr17:27383835-27384094(+)$1	1	191	216	22.8272
.(((((................)))	chr9:5786517-5786760(-)$1	1	143	168	21.1224
((((((............)))))))	chr12:26628139-26628410(-)$1	1	16	41	24.1967
((((((..............)))))	chr12:51112485-51112702(+)$1	1	114	139	23.1486
(.((((............)))))))	chr6:38120538-38120803(+)$1	1	172	197	23.7185
((((((............)))))))	chr11:44266640-44266947(+)$1	1	198	223	24.2676
((((.(..............).)))	chr20:60889622-60889863(-)$1	1	39	64	22.0181
.(((((............)))))))	chr17:76850239-76850521(-)$1	1	148	173	23.7980
)(((((............)))))))	chr20:44526546-44526778(+)$1	1	114	139	22.1144
.(((((..............)))))	chr5:150409604-150409877(-)$1	1	104	129	22.9926
((((..............)))).))	chr20:43127515-43127748(-)$1	1	155	180	20.8080
((((((...........)))))))(	chr4:129191865-129192150(-)$1	1	18	43	22.5921
(((((.............))))).)	chr4:74285884-74286087(+)$1	1	60	85	23.6340
(((((.............))))).)	chr4:74285887-74286091(+)$1	1	57	82	23.6340

#PSSM
e : 0.20	g : 0.14	f : 0.13	i : 0.07	d : 0.07	= : 0.05	" : 0.05	: : 0.04	# : 0.04	[ : 0.04	h : 0.02	! : 0.02	c : 0.02	( : 0.01	
e : 0.31	g : 0.14	f : 0.10	[ : 0.08	d : 0.07	= : 0.05	i : 0.04	c : 0.04	h : 0.02	! : 0.02	# : 0.02	" : 0.01	b : 0.01	
e : 0.29	d : 0.16	g : 0.14	f : 0.10	= : 0.05	c : 0.05	i : 0.04	h : 0.02	[ : 0.02	! : 0.02	" : 0.01	b : 0.01	
e : 0.23	d : 0.17	g : 0.13	[ : 0.11	f : 0.08	c : 0.05	i : 0.04	= : 0.04	y : 0.04	! : 0.02	h : 0.01	
e : 0.23	d : 0.14	g : 0.13	c : 0.10	f : 0.07	b : 0.07	y : 0.07	i : 0.04	= : 0.04	h : 0.01	! : 0.01	[ : 0.01	w : 0.01	
e : 0.17	d : 0.14	g : 0.13	c : 0.08	b : 0.08	f : 0.07	v : 0.07	y : 0.07	i : 0.04	= : 0.04	h : 0.01	a : 0.01	w : 0.01	
u : 0.25	v : 0.22	w : 0.16	t : 0.10	y : 0.08	c : 0.07	d : 0.04	e : 0.01	f : 0.01	b : 0.01	
t : 0.26	u : 0.25	v : 0.22	w : 0.16	y : 0.08	
t : 0.26	u : 0.25	v : 0.22	w : 0.16	y : 0.08	
t : 0.26	u : 0.25	v : 0.22	w : 0.16	y : 0.08	
t : 0.26	u : 0.25	v : 0.22	w : 0.16	y : 0.08	
t : 0.26	u : 0.25	v : 0.22	w : 0.16	y : 0.08	
t : 0.26	u : 0.25	v : 0.22	w : 0.16	y : 0.08	
t : 0.26	u : 0.25	v : 0.22	w : 0.16	y : 0.08	
t : 0.26	u : 0.25	v : 0.22	w : 0.16	y : 0.08	
t : 0.26	u : 0.25	v : 0.22	w : 0.16	y : 0.08	
t : 0.26	u : 0.25	v : 0.22	w : 0.16	y : 0.08	
u : 0.25	v : 0.22	t : 0.16	w : 0.16	y : 0.08	e : 0.02	g : 0.02	d : 0.01	c : 0.01	b : 0.01	
e : 0.17	d : 0.14	v : 0.14	w : 0.14	c : 0.10	y : 0.08	g : 0.07	f : 0.04	i : 0.02	b : 0.02	
e : 0.22	d : 0.16	w : 0.14	c : 0.10	g : 0.10	f : 0.05	b : 0.05	= : 0.04	y : 0.04	i : 0.02	] : 0.01	
e : 0.25	d : 0.16	c : 0.13	g : 0.13	f : 0.07	b : 0.05	= : 0.05	i : 0.04	h : 0.01	3 : 0.01	2 : 0.01	y : 0.01	a : 0.01	
e : 0.25	d : 0.16	] : 0.13	g : 0.13	f : 0.07	= : 0.05	i : 0.04	c : 0.04	3 : 0.02	h : 0.01	b : 0.01	2 : 0.01	y : 0.01	
e : 0.29	g : 0.16	] : 0.11	f : 0.08	d : 0.05	= : 0.05	c : 0.05	i : 0.04	h : 0.02	3 : 0.02	4 : 0.02	b : 0.01	
e : 0.20	g : 0.17	f : 0.11	4 : 0.07	i : 0.07	d : 0.05	= : 0.05	] : 0.04	b : 0.04	h : 0.02	2 : 0.02	: : 0.02	3 : 0.01	c : 0.01	E : 0.01	
e : 0.17	g : 0.14	d : 0.11	f : 0.10	4 : 0.07	i : 0.07	2 : 0.05	= : 0.05	: : 0.04	h : 0.02	3 : 0.02	b : 0.02	c : 0.01	] : 0.01	E : 0.01	

#score	1523.4350536370087
#seq	67
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_CDS_m3_run2.txt

#BEAR
dd####ddddoooooodddd]dddd	chr1:173455293-173455501(+)$1	208	142	167	11.0458
f!!gggggggooooooggggggg22	chr2:172809333-172809615(+)$1	282	152	177	12.2095
ddddccc[bboooooobb]ccc]dd	chr1:145438829-145439057(+)$1	228	35	60	14.8458
[ffffff[bboooooobb]ffffff	chr6:27835145-27835395(-)$1	250	74	99	14.0492
ca!!ffffffooooooffffff22a	chr2:73479728-73479999(+)$1	271	201	226	12.0830
e[bb[bb[bboooooobb]bbbb]e	chr7:93633409-93633646(-)$1	237	96	121	13.2742
"""dddd[bboooooobb]dddd33	chr3:135969122-135969426(+)$1	304	42	67	14.8396
dddd[bb[bboooooobb]bb]ddd	chrX:77369268-77369497(+)$1	229	8	33	13.8206
ee[ccc[cccoooooocccccc]ee	chr18:57026162-57026400(-)$1	238	15	40	13.3347
iiiiii"""aooooooa333iiiii	chr11:14539411-14539627(-)$1	216	56	81	13.3302
c:dddd!!bboooooobb22dddd:	chr10:81113494-81113795(+)$1	301	259	284	13.0529
!!dddd[cccooooooccc]dddd]	chr3:156272722-156273008(-)$1	286	139	164	13.4647
eeee[cccbboooooobb]ccc333	chr7:73609010-73609316(+)$1	306	237	262	14.8179
eeeeee!!bboooooobb22eeeee	chr11:61091406-61091684(-)$1	278	203	228	14.3743
ccdddd[cccooooooccc]dddd]	chr9:35062199-35062448(-)$1	249	108	133	13.2536
eeeee[ddddoooooodddd]eeee	chr9:127115842-127116084(-)$1	242	198	223	10.8862
ddddccc[aooooooaccc]ddddd	chr14:100820026-100820297(-)$1	271	203	228	11.9337
dd!!bb[cccooooooccc]bb22d	chr1:110950117-110950355(-)$1	238	30	55	12.3119
[a[ccc[cccooooooccc]ccc]a	chr11:65623402-65623665(-)$1	263	122	147	13.8661
ccc"""ddddoooooodddd]ccc:	chr12:57905974-57906223(+)$1	249	8	33	10.4545
[bbdddd[bboooooobb]dddd22	chr11:18424286-18424504(+)$1	218	168	193	13.9469
ee[bb!!cccooooooccc22bbee	chr15:44085867-44086133(+)$1	266	188	213	12.3094
gggg"""cccooooooccc22gggg	chr19:38798217-38798482(-)$1	265	149	174	12.9591
dddd[cccbboooooobb]cccddd	chr1:182354415-182354666(-)$1	251	162	187	14.5885
ccc:ffffffooooooffffffccc	chr12:21794935-21795160(-)$1	225	169	194	11.0281
ccdddd[cccooooooccc]dddd]	chr9:35062152-35062399(-)$1	247	59	84	13.2536
ggggg[a[bboooooobb]a]gggg	chr5:180665998-180666237(-)$1	239	138	163	14.8476
dddd[bbcccooooooccc]bb]dd	chr6:26056287-26056506(-)$1	219	93	118	12.2351
[bb$$$$$bboooooobb4444bb]	chr12:98992253-98992506(+)$1	253	96	121	13.1998
ee[bb[bbbboooooobb]bb]bbe	chr11:64084819-64085080(-)$1	261	73	98	12.5507
[dddd!!cccoooooocccdddd]e	chr17:76170765-76171016(-)$1	251	5	30	13.0722
$$$$ffffffooooooffffff333	chr5:233559-233809(+)$1	250	116	141	11.7872
g::eeeeebboooooobb]eeeeeG	chr7:143573479-143573736(-)$1	257	138	163	11.5329
C:ffffffbboooooobb22fffff	chrX:153627742-153628019(+)$1	277	5	30	11.8932
d[dddd[cccoooooocccdddddd	chr2:97544086-97544311(-)$1	225	140	165	12.6488
:ffffff[bboooooobb]ffffff	chrX:154012201-154012419(-)$1	218	0	25	13.0898
[bb$$$$$bboooooobb4444bb]	chr12:98992306-98992562(+)$1	256	43	68	13.1998
eeeaccc[bboooooobb]ccc]a]	chr1:8923856-8924087(-)$1	231	153	178	14.9595
eeeeebb[aooooooa]bb]eeeee	chr17:28575998-28576291(-)$1	293	247	272	10.9204
:a[gggggggooooooggggggg]a	chr11:32605272-32605576(+)$1	304	41	66	11.6588
ffffff!!bboooooobb333ffff	chr11:75282867-75283131(+)$1	264	23	48	14.3395
====="""bboooooobb333====	chr9:32572935-32573188(-)$1	253	34	59	15.4068
cc[eeeeebboooooobb]eeeee]	chr7:75684066-75684301(+)$1	235	201	226	14.1376
$$$$ffffffooooooffffffeee	chr16:87436551-87436796(+)$1	245	216	241	11.5299
ddddccc[bboooooobb]ccc]dd	chr1:145438863-145439093(+)$1	230	1	26	14.8458
f:dddd!!bboooooobb22ddddF	chr12:56119917-56120145(-)$1	228	151	176	13.2756
####ffffffooooooffffff444	chr19:51857359-51857647(-)$1	288	217	242	12.2969
""eeeee[bboooooobb]eeeee4	chrX:77378661-77378907(+)$1	246	25	50	14.4434
::::ccc[bboooooobb]cccfff	chr21:33036020-33036281(+)$1	261	116	141	11.3393
:ccc"""cccooooooccc]ccc::	chr19:59060436-59060641(+)$1	205	169	194	10.8819
hhhhhha[bboooooobb]a22hhh	chr10:17277067-17277315(+)$1	248	206	231	12.4269
####ffffffooooooffffffeee	chr2:73476094-73476402(+)$1	308	273	298	12.2296
cc[ccc!!bboooooobb22ccc]c	chr6:30691118-30691376(+)$1	258	183	208	15.2309

#otherMatches

#Seq PSSM
CUCUACCCAGCUACCACUGGCAGGA	chr1:173455293-173455501(+)$1	208	142	167	11.0458
AUCUAAAGUUGAUGAGAACUUUGAC	chr2:172809333-172809615(+)$1	282	152	177	12.2095
CGGCAGUGGCGAGAAGGUGGCUGGC	chr1:145438829-145439057(+)$1	228	35	60	14.8458
AGUUUCUUGCCACCAUGUCGGAAAC	chr6:27835145-27835395(-)$1	250	74	99	14.0492
UCGACUGUGGAUGCUCCCACAGCAG	chr2:73479728-73479999(+)$1	271	201	226	12.0830
UUUCUCUCUCUCCUCUGGCAGGAUG	chr7:93633409-93633646(-)$1	237	96	121	13.2742
UUAGCACAUGCGUACUCAGGUGCGC	chr3:135969122-135969426(+)$1	304	42	67	14.8396
GGACAAUGGAGCCAAGUCGGUAGUC	chrX:77369268-77369497(+)$1	229	8	33	13.8206
ACGGCGUGGGAGGAGACCCCGCGGU	chr18:57026162-57026400(-)$1	238	15	40	13.3347
AAAGAUCUUCUAAGAUGUGUGUUUU	chr11:14539411-14539627(-)$1	216	56	81	13.3302
CCAGGACCCACCACAUUGCUUCCUA	chr10:81113494-81113795(+)$1	301	259	284	13.0529
AAAGGCAGCUCCAAACAGCAGUCUG	chr3:156272722-156273008(-)$1	286	139	164	13.4647
UGGGAUGAUCAUGGCCGGUUCACAC	chr7:73609010-73609316(+)$1	306	237	262	14.8179
CAAGGAUCUCCGUGUAGAACUCCUU	chr11:61091406-61091684(-)$1	278	203	228	14.3743
GAUCAUGAGCAAAUUGGCUGGUGAG	chr9:35062199-35062448(-)$1	249	108	133	13.2536
CACUUCCUGAAUGGCAUCAGUGGGU	chr9:127115842-127116084(-)$1	242	198	223	10.8862
GCCAAGGACAUCAUCGCCUGUGGCU	chr14:100820026-100820297(-)$1	271	203	228	11.9337
GCUCGCGUCAAGUGACUGAGGCCUG	chr1:110950117-110950355(-)$1	238	30	55	12.3119
CGAUGUGGGCCAGACUGUCGACGAC	chr11:65623402-65623665(-)$1	263	122	147	13.8661
GGUCUCAGGAAAUCUCUCCUAACCA	chr12:57905974-57906223(+)$1	249	8	33	10.4545
UGCAAUCUGGAUUCAGCCCGAUUCC	chr11:18424286-18424504(+)$1	218	168	193	13.9469
GCUCACAGGUCCCAGCACCGAUGGC	chr15:44085867-44086133(+)$1	266	188	213	12.3094
AGGUGCUGGCCAUCCUGCUCAGCCU	chr19:38798217-38798482(-)$1	265	149	174	12.9591
AGAAUGGUCUGAAGUGAGUACCUUC	chr1:182354415-182354666(-)$1	251	162	187	14.5885
UGUAAUCUGGAUUCUGCUAGAUUUC	chr12:21794935-21795160(-)$1	225	169	194	11.0281
GAUCAUGAGCAAAUUGGCUGGUGAG	chr9:35062152-35062399(-)$1	247	59	84	13.2536
CCAGAUGGAUCCCUCUGUGCUUCUG	chr5:180665998-180666237(-)$1	239	138	163	14.8476
CUUGGUCUCAAGAGCCUGGUGAGCA	chr6:26056287-26056506(-)$1	219	93	118	12.2351
UGCUGAAUUCUUUGCUGACAUUGCC	chr12:98992253-98992506(+)$1	253	96	121	13.1998
UGCGGCGACAUGAAACUGCUUACCC	chr11:64084819-64085080(-)$1	261	73	98	12.5507
AGACAAGUACCACUCCGUGUGUCGG	chr17:76170765-76171016(-)$1	251	5	30	13.0722
UGGAGCGAUACGCCCCUGUCGCGAA	chr5:233559-233809(+)$1	250	116	141	11.7872
CUUCAUUUCCUGUGAUGGUGAAUGA	chr7:143573479-143573736(-)$1	257	138	163	11.5329
GAAGAGCCCCUGCACUGGUUGGCUC	chrX:153627742-153628019(+)$1	277	5	30	11.8932
CAUCACUCCAGACCAGUGGGUGAGU	chr2:97544086-97544311(-)$1	225	140	165	12.6488
UGGAAAUGAACACUGCUUGGUUUUC	chrX:154012201-154012419(-)$1	218	0	25	13.0898
UGCUGAAUUCUUUGCUGACAUUGCC	chr12:98992306-98992562(+)$1	256	43	68	13.1998
GGCGAGCAGCUUUCCCGCAGCUACG	chr1:8923856-8924087(-)$1	231	153	178	14.9595
GGCUGAGUGAUACUGCCCUCCAGCU	chr17:28575998-28576291(-)$1	293	247	272	10.9204
ACAGGUCGCCGCUCAGGGUGACCCG	chr11:32605272-32605576(+)$1	304	41	66	11.6588
GUCAGGCAAGAAGGACCUGUACCUG	chr11:75282867-75283131(+)$1	264	23	48	14.3395
CCCGCAAGGUCGCUUUGCAGAGCGG	chr9:32572935-32573188(-)$1	253	34	59	15.4068
GGAGUGGCCGCAGAUCUGAGCCACA	chr7:75684066-75684301(+)$1	235	201	226	14.1376
UACCAACUGAGAUCGAUCAGUUCAU	chr16:87436551-87436796(+)$1	245	216	241	11.5299
CGGCAGUGGCGAGAAGGUGGCUGGC	chr1:145438863-145439093(+)$1	230	1	26	14.8458
AUGUCGAAGAACCGAGUCCCCGACU	chr12:56119917-56120145(-)$1	228	151	176	13.2756
GUCAGCUGUGGGCCUGCACAGUGCC	chr19:51857359-51857647(-)$1	288	217	242	12.2969
UGUAGAUUGGCACUUCUCUGUUUGA	chrX:77378661-77378907(+)$1	246	25	50	14.4434
UUAAAGGACUGACUGAAGGCCUGCA	chr21:33036020-33036281(+)$1	261	116	141	11.3393
AGGUAAGCCUGUCCCAAGGAACUAU	chr19:59060436-59060641(+)$1	205	169	194	10.8819
UGAAGGAGGAAAUGGCUCGUCACCU	chr10:17277067-17277315(+)$1	248	206	231	12.4269
CCCUGGUAUAACAGAGUGUACUGUC	chr2:73476094-73476402(+)$1	308	273	298	12.2296
AUCCGAGAAGAAUACCCUGAUCGCA	chr6:30691118-30691376(+)$1	258	183	208	15.2309

#DB
((....((((......)))).))))	chr1:173455293-173455501(+)$1	1	142	167	11.0458
(..(((((((......)))))))..	chr2:172809333-172809615(+)$1	1	152	177	12.2095
(((((((.((......)).))).))	chr1:145438829-145439057(+)$1	1	35	60	14.8458
.((((((.((......)).))))))	chr6:27835145-27835395(-)$1	1	74	99	14.0492
((..((((((......))))))..)	chr2:73479728-73479999(+)$1	1	201	226	12.0830
(.((.((.((......)).)))).)	chr7:93633409-93633646(-)$1	1	96	121	13.2742
...((((.((......)).))))..	chr3:135969122-135969426(+)$1	1	42	67	14.8396
((((.((.((......)).)).)))	chrX:77369268-77369497(+)$1	1	8	33	13.8206
((.(((.(((......)))))).))	chr18:57026162-57026400(-)$1	1	15	40	13.3347
((((((...(......)...)))))	chr11:14539411-14539627(-)$1	1	56	81	13.3302
).((((..((......))..)))).	chr10:81113494-81113795(+)$1	1	259	284	13.0529
..((((.(((......))).)))).	chr3:156272722-156273008(-)$1	1	139	164	13.4647
((((.(((((......)).)))...	chr7:73609010-73609316(+)$1	1	237	262	14.8179
((((((..((......))..)))))	chr11:61091406-61091684(-)$1	1	203	228	14.3743
((((((.(((......))).)))).	chr9:35062199-35062448(-)$1	1	108	133	13.2536
(((((.((((......)))).))))	chr9:127115842-127116084(-)$1	1	198	223	10.8862
(((((((.(......)))).))))(	chr14:100820026-100820297(-)$1	1	203	228	11.9337
((..((.(((......))).))..)	chr1:110950117-110950355(-)$1	1	30	55	12.3119
.(.(((.(((......))).))).)	chr11:65623402-65623665(-)$1	1	122	147	13.8661
(((...((((......)))).))).	chr12:57905974-57906223(+)$1	1	8	33	10.4545
.((((((.((......)).))))..	chr11:18424286-18424504(+)$1	1	168	193	13.9469
((.((..(((......)))..))))	chr15:44085867-44086133(+)$1	1	188	213	12.3094
((((...(((......)))..))))	chr19:38798217-38798482(-)$1	1	149	174	12.9591
((((.(((((......)).))))))	chr1:182354415-182354666(-)$1	1	162	187	14.5885
))).((((((......))))))(((	chr12:21794935-21795160(-)$1	1	169	194	11.0281
((((((.(((......))).)))).	chr9:35062152-35062399(-)$1	1	59	84	13.2536
(((((.(.((......)).).))))	chr5:180665998-180666237(-)$1	1	138	163	14.8476
((((.(((((......))).)).))	chr6:26056287-26056506(-)$1	1	93	118	12.2351
.((.....((......))....)).	chr12:98992253-98992506(+)$1	1	96	121	13.1998
((.((.((((......)).)).)))	chr11:64084819-64085080(-)$1	1	73	98	12.5507
.((((..(((......))))))).)	chr17:76170765-76171016(-)$1	1	5	30	13.0722
....((((((......))))))...	chr5:233559-233809(+)$1	1	116	141	11.7872
)..(((((((......)).))))))	chr7:143573479-143573736(-)$1	1	138	163	11.5329
(.((((((((......))..)))))	chrX:153627742-153628019(+)$1	1	5	30	11.8932
(.((((.(((......)))))))))	chr2:97544086-97544311(-)$1	1	140	165	12.6488
.((((((.((......)).))))))	chrX:154012201-154012419(-)$1	1	0	25	13.0898
.((.....((......))....)).	chr12:98992306-98992562(+)$1	1	43	68	13.1998
(((((((.((......)).))).).	chr1:8923856-8924087(-)$1	1	153	178	14.9595
(((((((.(......).)).)))))	chr17:28575998-28576291(-)$1	1	247	272	10.9204
.(.(((((((......))))))).)	chr11:32605272-32605576(+)$1	1	41	66	11.6588
((((((..((......))...))))	chr11:75282867-75283131(+)$1	1	23	48	14.3395
(((((...((......))...))))	chr9:32572935-32573188(-)$1	1	34	59	15.4068
((.(((((((......)).))))).	chr7:75684066-75684301(+)$1	1	201	226	14.1376
....((((((......)))))))))	chr16:87436551-87436796(+)$1	1	216	241	11.5299
(((((((.((......)).))).))	chr1:145438863-145439093(+)$1	1	1	26	14.8458
).((((..((......))..)))))	chr12:56119917-56120145(-)$1	1	151	176	13.2756
....((((((......))))))...	chr19:51857359-51857647(-)$1	1	217	242	12.2969
..(((((.((......)).))))).	chrX:77378661-77378907(+)$1	1	25	50	14.4434
....(((.((......)).)))(((	chr21:33036020-33036281(+)$1	1	116	141	11.3393
.(((...(((......))).)))..	chr19:59060436-59060641(+)$1	1	169	194	10.8819
(((((((.((......)).)..)))	chr10:17277067-17277315(+)$1	1	206	231	12.4269
....((((((......)))))))))	chr2:73476094-73476402(+)$1	1	273	298	12.2296
((.(((..((......))..))).)	chr6:30691118-30691376(+)$1	1	183	208	15.2309

#PSSM
d : 0.16	e : 0.16	c : 0.15	[ : 0.11	: : 0.07	f : 0.05	g : 0.05	" : 0.03	$ : 0.03	# : 0.03	i : 0.01	! : 0.01	C : 0.01	= : 0.01	h : 0.01	
d : 0.16	e : 0.15	c : 0.13	: : 0.09	f : 0.05	a : 0.05	b : 0.05	! : 0.03	[ : 0.03	" : 0.03	g : 0.03	$ : 0.03	# : 0.03	i : 0.01	= : 0.01	h : 0.01	
d : 0.24	[ : 0.13	e : 0.11	f : 0.07	b : 0.07	# : 0.05	! : 0.05	c : 0.05	g : 0.03	$ : 0.03	: : 0.03	" : 0.01	i : 0.01	= : 0.01	h : 0.01	
d : 0.28	e : 0.13	g : 0.07	f : 0.07	c : 0.07	$ : 0.07	# : 0.05	b : 0.05	! : 0.03	: : 0.03	i : 0.01	" : 0.01	a : 0.01	= : 0.01	h : 0.01	
f : 0.18	d : 0.16	c : 0.15	e : 0.11	[ : 0.09	g : 0.05	b : 0.05	" : 0.05	$ : 0.03	# : 0.01	i : 0.01	= : 0.01	h : 0.01	
c : 0.18	f : 0.18	d : 0.15	b : 0.09	e : 0.07	" : 0.07	[ : 0.05	g : 0.03	! : 0.03	$ : 0.03	# : 0.01	i : 0.01	h : 0.01	
f : 0.16	c : 0.13	[ : 0.13	! : 0.13	d : 0.09	b : 0.09	" : 0.07	e : 0.05	g : 0.03	a : 0.03	$ : 0.03	
[ : 0.28	c : 0.26	f : 0.13	! : 0.09	d : 0.05	g : 0.03	" : 0.03	$ : 0.03	e : 0.03	b : 0.01	
b : 0.50	c : 0.22	f : 0.11	d : 0.05	g : 0.03	a : 0.03	" : 0.01	
b : 0.50	c : 0.22	f : 0.11	d : 0.05	g : 0.03	o : 0.03	a : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.96	a : 0.03	
b : 0.50	c : 0.24	f : 0.11	d : 0.05	g : 0.03	a : 0.01	] : 0.01	
b : 0.52	c : 0.24	f : 0.11	d : 0.05	g : 0.03	3 : 0.01	
] : 0.33	c : 0.24	f : 0.11	2 : 0.09	d : 0.05	3 : 0.05	g : 0.03	4 : 0.03	b : 0.01	
] : 0.16	f : 0.15	d : 0.13	c : 0.13	2 : 0.13	b : 0.05	3 : 0.05	e : 0.05	g : 0.03	a : 0.03	4 : 0.03	
c : 0.18	d : 0.18	f : 0.16	b : 0.09	e : 0.09	] : 0.07	2 : 0.05	g : 0.03	4 : 0.03	3 : 0.03	i : 0.01	
d : 0.20	c : 0.20	f : 0.18	e : 0.11	g : 0.07	b : 0.07	] : 0.03	4 : 0.03	i : 0.01	= : 0.01	2 : 0.01	
d : 0.24	e : 0.15	] : 0.09	f : 0.09	b : 0.09	c : 0.09	g : 0.07	2 : 0.03	3 : 0.03	i : 0.01	= : 0.01	4 : 0.01	h : 0.01	
d : 0.24	e : 0.18	f : 0.09	] : 0.09	2 : 0.07	3 : 0.05	b : 0.05	c : 0.03	g : 0.03	i : 0.01	a : 0.01	= : 0.01	4 : 0.01	: : 0.01	h : 0.01	
e : 0.18	d : 0.16	] : 0.13	f : 0.09	a : 0.05	3 : 0.05	: : 0.05	2 : 0.03	g : 0.03	c : 0.03	4 : 0.03	i : 0.01	G : 0.01	= : 0.01	F : 0.01	h : 0.01	

#score	689.3164533695941
#seq	53
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_CDS_m1_run1.txt

#BEAR
a[dddd[ccc[ccc[cccnnnnncccccccccddddaggg	chr7:5632793-5633050(+)$1	257	119	159	14.9376
!ccchhhhhhhh"""cccooooooccchhhhhhhh333cc	chr11:71725291-71725558(-)$1	267	23	63	13.5954
!!ccc!!a!!ccc!!cccnnnnncccccc22a4444ccc2	chr14:102478576-102478810(+)$1	234	83	123	15.9595
ee!!hhhhhhhh"""ccclllccc333hhhhhhhheeeee	chrX:53224109-53224349(-)$1	240	44	84	11.8342
ggg"""ccc!!gggggggnnnnnggggggg22cccggggg	chr1:889102-889366(-)$1	264	213	253	13.9151
b:bb!!eeeee[bb[cccnnnnnccc]bb]eeeee22bbF	chr22:35808401-35808674(+)$1	273	123	163	12.2527
bbccc[ccc[ggggggglllggggggg]ccc]ccc4444b	chr2:96945121-96945369(-)$1	248	7	47	11.5003
###dddd[ccc[bb[ccclllcccbb]ccc]dddd4444d	chr3:47890607-47890863(+)$1	256	183	223	14.2103
bb[eeeee####eeeeeooooooeeeeeeeeee]bb333e	chr15:22954112-22954452(+)$1	340	134	174	12.8865
eeeee"""bb####cccooooooccc4444bb]eeeee]d	chr3:184021377-184021624(+)$1	247	111	151	14.0859
####ccc####ccc[cccnnnnncccccc4444ccc333a	chr11:61081319-61081540(-)$1	221	123	163	17.5123
bbeeeeeccc!!ggggggglllggggggg]cccggggggg	chr17:80039901-80040132(-)$1	231	111	151	12.2064
bb[ffffffbb"""cccooooooccc333bb]ffffff]b	chr17:78359981-78360271(+)$1	290	143	183	13.7473
::eeeeedddd####cccnnnnnccc4444dddd]eeeee	chr10:75529556-75529836(+)$1	280	3	43	13.3485
!ccc####dddd"""bboooooobb333dddd22ccc22b	chr1:19412632-19412865(-)$1	233	13	53	13.0103
bbeeeee!!dddd[cccooooooccc]ddddeeeee]bb:	chr1:160267347-160267604(-)$1	257	62	102	13.0993
cccbb[cccccc!!ddddnnnnndddd22ccc]ccc]bb:	chr1:19481339-19481566(-)$1	227	45	85	12.0828
iiiiiiiii[dddd!!bbnnnnnbb]dddd]iiiiiiiii	chr19:19017792-19018022(-)$1	230	134	174	13.6172
ggg!!ffffff####cccnnnnnccc333ffffff66666	chr11:62364767-62364987(-)$1	220	76	116	13.4501
=dddd"""ffffff[cccnnnnnccc]ffffff4444ddd	chr14:102474414-102474622(+)$1	208	43	83	13.1321
[a[eeeee[bb[a[ddddmmmmdddd]abb333eeeee]a	chr10:71151794-71152014(+)$1	220	77	117	12.0798
!!a[bb"""bb[ccc[bbnnnnnbb22ccc]bbbba]eee	chr7:128485943-128486169(+)$1	226	31	71	12.2287
""eeeee"""dddd[ddddllldddddddd]eeeee22cc	chr3:184038379-184038597(+)$1	218	125	165	12.0280
gg[eeeee[eeeee[cccmmmmccceeeee22eeeee]gg	chr17:26960594-26960857(-)$1	263	36	76	11.9085
ddddbbbb!!gggggggooooooggggggg]bb]bb22dd	chr17:78337307-78337595(+)$1	288	204	244	11.0606
cc[eeeee!!ccc"""bbnnnnnbb]ccc]eeeeecccbb	chr17:80046757-80047039(-)$1	282	233	273	14.6184
!eeeee[ggggggg[cccnnnnnccc]ggggggg22eeee	chr17:27016428-27016679(+)$1	251	116	156	15.0258
iiiiiiii####bb[cccnnnnnccc]bb333iiiiiiii	chr12:57906462-57906737(+)$1	275	53	93	16.5507
ggggggg[ccc####ddddmmmmdddd22ccc]ggggggg	chr16:30370500-30370759(-)$1	259	94	134	11.7927
!bb[ccc[cccgggggggnnnnnggggggg]ccc]ccc]b	chr17:57760167-57760428(+)$1	261	107	147	14.1647
eeeeccc!!eeeee!!bbnnnnnbb4444eeeee]ccc44	chr17:1564186-1564418(-)$1	232	53	93	13.3422
eeeeedddddddd[cccooooooccc]dddd22dddd]ee	chr17:80042666-80042894(-)$1	228	117	157	12.3369
gg!!dddd[a[a!!ddddnnnnndddd]a]a]dddd4444	chr10:1046629-1046882(+)$1	253	155	195	14.8655
cc!!dddd[bb[bb[ccclllccc]bb]bb]ddddccc]b	chr5:169140930-169141188(+)$1	258	142	182	12.2617
ccciiiiiiiiiddddoooooodddd]iiiiiiiii333c	chr6:31762708-31762927(-)$1	219	96	136	13.8468
bb[ggggggg[ccc!!ccclllccc22cccggggggg]bb	chr9:71835700-71835996(+)$1	296	50	90	13.9606
!ggggggg$$$$$eeeeennnnneeeee22ggggggg]ee	chr14:65241844-65242197(-)$1	353	203	243	12.2780
bb!!bb[eeeee!!cccooooooccc22eeeee]bb22bb	chr1:6662562-6662792(-)$1	230	24	64	13.5479
bb[iiiiiiiii!!ccc[annnnna]ccc22iiiiiiiii	chr7:128486280-128486581(+)$1	301	140	180	14.5649
####eeeee[ccc"""cccmmmmccc333ccceeeeeddd	chr1:19438931-19439161(-)$1	230	77	117	13.5435
==========[cccddddnnnnndddd333ccc333====	chr6:150038889-150039178(-)$1	289	239	279	15.1574
bb!!iiiiiiiii!!cccnnnnnccc]iiiiiiiii333b	chr10:6130909-6131315(+)$1	406	61	101	18.3224
gg[dddd!!bb[bb!!bboooooobb]bbbb22dddd]gg	chrX:53227571-53227805(-)$1	234	48	88	11.8476
bb!!a[ccc"""ddddrrrrrrrrrdddd4444ccca22b	chr12:6625912-6626174(+)$1	262	176	216	10.9778
[a!!ddddccc[bb[cccmmmmcccbb333ccc]dddd22	chr3:184043167-184043371(+)$1	204	77	117	12.5886
$ggggggg[ccc"""cccmmmmccc333cccggggggg88	chr16:2814744-2814963(+)$1	219	127	167	13.9156
cc[dddd"""ccc[bb[ammmma]bbccc]dddd]ccc]g	chr12:6691238-6691483(-)$1	245	189	229	11.5626
cc!!iiiiiiiii[cccooooooccc]iiiiiiiiicccc	chr1:19414213-19414467(-)$1	254	162	202	16.2350
b####iiiiiiiiicccooooooccc]iiiiiiiii22bb	chr3:184019295-184019535(+)$1	240	43	83	15.8994
###eeeee"""ccccccooooooccc]ccc]eeeee4444	chr15:91025091-91025365(+)$1	274	74	114	16.6565
!a[eeeee!!a[bb[ccclllccc]bb]a22eeeeea22c	chr19:11118477-11118717(+)$1	240	102	142	13.9232

#otherMatches

#Seq PSSM
GAGGACCGCCUGUCCUGCUUCGCGCAGACGGUGUCCCCCG	chr7:5632793-5633050(+)$1	257	119	159	14.9376
AGGUGGCGCGGCUGACCCAGGAGCGGGGCCGUGCCCAGGC	chr11:71725291-71725558(-)$1	267	23	63	13.5954
CAGCGUGAGAGGCGAGCUGCAGAAGCGCCAGUGGAUCGUC	chr14:102478576-102478810(+)$1	234	83	123	15.9595
AGGCGGGGGAUGUAAGGGAAGCCCAGUCAUUCCCUCUCUU	chrX:53224109-53224349(-)$1	240	44	84	11.8342
CCCAGUCCCCUCCCUGUGUCUGUCAUGGGGUCGGGGGGCC	chr1:889102-889366(-)$1	264	213	253	13.9151
GAGCCCCCAGGAGGAGGAGGAGUUCCGUCGCCUGGCUGCC	chr22:35808401-35808674(+)$1	273	123	163	12.2527
GGGCUUCCUGAGCAUGGUCUCCGUGUUGAGGUGGCUUUUC	chr2:96945121-96945369(-)$1	248	7	47	11.5003
GCUGGUGAAGGGCGUGCUGAUGGCCGGCCUCUACCCCAAC	chr3:47890607-47890863(+)$1	256	183	223	14.2103
GCAGGAUGGAGAGCGUGUUCAACCACGCCAUCCGGCACAC	chr15:22954112-22954452(+)$1	340	134	174	12.8865
CCUCACCCAGAUUGACAAGUACCUGUACUCCUCUGAGGAC	chr3:184021377-184021624(+)$1	247	111	151	14.0859
UGACCACCUUUGAGAGUAGCCAUUACCUCCUUUGUGCCUU	chr11:61081319-61081540(-)$1	221	123	163	17.5123
GUGCCCUGAGCUGGACUACUUUGUGGUCUUCUCCUCUGUG	chr17:80039901-80040132(-)$1	231	111	151	12.2064
GCCGACGGGGCCUGGGCCUCUGUGCUACCGCUCUCGUCAG	chr17:78359981-78360271(+)$1	290	143	183	13.7473
AUGAUCAUUGACUUUAUUUUGAUAAUCCCCUCAGUUGAUC	chr10:75529556-75529836(+)$1	280	3	43	13.3485
cccacccccacccccgcccccCCGCCCAGGUGCCUGGUUG	chr1:19412632-19412865(-)$1	233	13	53	13.0103
UCUUUAGAUUGCUCUGGAAGCAGCCAAAGCACUGGAUGAC	chr1:160267347-160267604(-)$1	257	62	102	13.0993
CACGUGUUGCAGAUGUUGUUCUUCAGCUAUUGUCAAGGCA	chr1:19481339-19481566(-)$1	227	45	85	12.0828
GAGCAGGAGCGUGGACGUGACCAACACCACCUUCCUGCUC	chr19:19017792-19018022(-)$1	230	134	174	13.6172
UUGACUUCUCAAUUUCUCCCUUAGAGCUGUGGGAACCUUU	chr11:62364767-62364987(-)$1	220	76	116	13.4501
ggagacaauugagggcacagcaGGUGGUUUUAGCGCCUUU	chr14:102474414-102474622(+)$1	208	43	83	13.1321
GUGUUCCAGGGACCGGCAGCAAUGCCUGCUACAUGGAGGA	chr10:71151794-71152014(+)$1	220	77	117	12.0798
gagaggagagggagCAUCUGUGUGAAGGCUGCCCCCACCC	chr7:128485943-128486169(+)$1	226	31	71	12.2287
CCCCAGGUACUGUCUGCUUUUCGAGUGAUACCCUGGCUGG	chr3:184038379-184038597(+)$1	218	125	165	12.0280
AAGAGAGGGGUAAUGUUGUGAACAAGUUAUAGCCUUUGUU	chr17:26960594-26960857(-)$1	263	36	76	11.9085
UGCCGCUGGAGCUCAUCUGCUCCGAUGAGCACAUGCAAGG	chr17:78337307-78337595(+)$1	288	204	244	11.0606
GGAUGGGCGCCUCAGCUGAGCACCAAGAGAGCCCACCUGC	chr17:80046757-80047039(-)$1	282	233	273	14.6184
ACCUUGAUGCCUUUGCAGAAGAGCUGGAGAGGCAGGUAAG	chr17:27016428-27016679(+)$1	251	116	156	15.0258
UCAUUCUCCUCUGUCCAGAGUACCUGAACUAUGAGGAUGG	chr12:57906462-57906737(+)$1	275	53	93	16.5507
CGGGGAGAUCUUUUUUGCACUCCUGCGCCGGGCCUCCCCG	chr16:30370500-30370759(-)$1	259	94	134	11.7927
UCGCCUGUGUAGAUGGGAAAGAAUUCCGUCUUGCUCAGAU	chr17:57760167-57760428(+)$1	261	107	147	14.1647
CCCUGGGCGGUGUGGAAGGCAUUCUGGAACACACACUCUU	chr17:1564186-1564418(-)$1	232	53	93	13.3422
CCGGGCUCCGCAGAACUGCAGAAGGUGUUGCAGGGAGACC	chr17:80042666-80042894(-)$1	228	117	157	12.3369
AUCAGACCUCUCUUCAUCAACAAGGUGUGUGUGGUCACUC	chr10:1046629-1046882(+)$1	253	155	195	14.8655
CCUUCCUUCUUAUCGACACCAUGUGGAAAACAAGGGGGCC	chr5:169140930-169141188(+)$1	258	142	182	12.2617
CCCGCCUGCCGGCCCUGGAGCAGGGGCCCGGUGGGCUCUG	chr6:31762708-31762927(-)$1	219	96	136	13.8468
CACAUUCAGUUGUGAUUGUCCUGCGUCCACACUGAGUUUG	chr9:71835700-71835996(+)$1	296	50	90	13.9606
GCUCCUGGGACAGGCUGCGGGAGGCAGCGGCCGGGAGGCU	chr14:65241844-65242197(-)$1	353	203	243	12.2780
UGACCCUGGAGGCGGCGGGCGGGCGCGACUUCCCGGCGCA	chr1:6662562-6662792(-)$1	230	24	64	13.5479
UGACCGAGGGCUGUGAUCCCACCCGCGUCCGAGCCUUCGG	chr7:128486280-128486581(+)$1	301	140	180	14.5649
AUAAUCUUCGCCGAGGGGCUGCGGCCAUGCGGGAGGAGGU	chr1:19438931-19439161(-)$1	230	77	117	13.5435
GUUGGCGGGGCGGUGGCCGCCGGGGCCCACGCCCAUCCCC	chr6:150038889-150039178(-)$1	289	239	279	15.1574
cgcaggcgcgggcgcGCUCUCCCGGCAGCCCGCGCUCCCU	chr10:6130909-6131315(+)$1	406	61	101	18.3224
CUGCUGCAGCAACUAAAGAACUGCCUGAGUGAGGCAGAGG	chrX:53227571-53227805(-)$1	234	48	88	11.8476
CAGAGACCAGUUCUUGGAUACUUUACAAGCCCAUGGCCAU	chr12:6625912-6626174(+)$1	262	176	216	10.9778
UGACUGGCCCUCUGUCUCCACAGAGCAAUUGGGUGCCACG	chr3:184043167-184043371(+)$1	204	77	117	12.5886
GAGAUGGGUCUGGGACUCCCUCGAGGCACAGCCUGUCUGG	chr16:2814744-2814963(+)$1	219	127	167	13.9156
UGAGCCUCUUGCCAUUGUUUCUAGGGggccaggcgcagug	chr12:6691238-6691483(-)$1	245	189	229	11.5626
AGCUGCUGGGCCUACGGUCGGUCCUGAGGGCCCAGCCUGA	chr1:19414213-19414467(-)$1	254	162	202	16.2350
CAUCAUCUCCGUUUUGGCCAUGACCAUGAGUGGGGAGCGU	chr3:184019295-184019535(+)$1	240	43	83	15.8994
GUUGGGUAUAAUUUCUGUCUUCCCAGCAAACUGCCCUAUG	chr15:91025091-91025365(+)$1	274	74	114	16.6565
GGAGGAGGAAGAGCAGCCGCAGGCAGCACAGCCUCCCACC	chr19:11118477-11118717(+)$1	240	102	142	13.9232

#DB
(.((((.(((.(((.(((.....)))))))))))))))))	chr7:5632793-5633050(+)$1	1	119	159	14.9376
.(((((((((((...(((......)))))))))))...))	chr11:71725291-71725558(-)$1	1	23	63	13.5954
..(((..(..(((..(((.....))))))..)....))).	chr14:102478576-102478810(+)$1	1	83	123	15.9595
((..((((((((...(((...)))...)))))))))))))	chrX:53224109-53224349(-)$1	1	44	84	11.8342
(((...(((..(((((((.....)))))))..))))))))	chr1:889102-889366(-)$1	1	213	253	13.9151
).((..(((((.((.(((.....))).)).)))))..)))	chr22:35808401-35808674(+)$1	1	123	163	12.2527
(((((.(((.(((((((...))))))).))).)))....)	chr2:96945121-96945369(-)$1	1	7	47	11.5003
...((((.(((.((.(((...))))).))).))))....)	chr3:47890607-47890863(+)$1	1	183	223	14.2103
((.(((((....(((((......)))))))))).))...)	chr15:22954112-22954452(+)$1	1	134	174	12.8865
(((((...((....(((......)))....)).))))).)	chr3:184021377-184021624(+)$1	1	111	151	14.0859
....(((....(((.(((.....))))))....)))...)	chr11:61081319-61081540(-)$1	1	123	163	17.5123
)))))))(((..(((((((...))))))).)))(((((((	chr17:80039901-80040132(-)$1	1	111	151	12.2064
((.((((((((...(((......)))...)).)))))).)	chr17:78359981-78360271(+)$1	1	143	183	13.7473
..(((((((((....(((.....)))....)))).)))))	chr10:75529556-75529836(+)$1	1	3	43	13.3485
.(((....((((...((......))...))))..)))..)	chr1:19412632-19412865(-)$1	1	13	53	13.0103
(((((((..((((.(((......))).))))))))).)).	chr1:160267347-160267604(-)$1	1	62	102	13.0993
)))((.((((((..((((.....))))..))).))).)).	chr1:19481339-19481566(-)$1	1	45	85	12.0828
(((((((((.((((..((.....)).)))).)))))))))	chr19:19017792-19018022(-)$1	1	134	174	13.6172
(((..((((((....(((.....)))...)))))).....	chr11:62364767-62364987(-)$1	1	76	116	13.4501
(((((...((((((.(((.....))).))))))....)))	chr14:102474414-102474622(+)$1	1	43	83	13.1321
.(.(((((.((.(.((((....)))).)))...))))).)	chr10:71151794-71152014(+)$1	1	77	117	12.0798
..(.((...((.(((.((.....))..))).))))).)))	chr7:128485943-128486169(+)$1	1	31	71	12.2287
..(((((...((((.((((...)))))))).)))))..))	chr3:184038379-184038597(+)$1	1	125	165	12.0280
((.(((((.(((((.(((....))))))))..))))).))	chr17:26960594-26960857(-)$1	1	36	76	11.9085
((((((((..(((((((......))))))).)).))..))	chr17:78337307-78337595(+)$1	1	204	244	11.0606
((.(((((..(((...((.....)).))).))))))))))	chr17:80046757-80047039(-)$1	1	233	273	14.6184
.(((((.(((((((.(((.....))).)))))))..))))	chr17:27016428-27016679(+)$1	1	116	156	15.0258
((((((((....((.(((.....))).))...))))))))	chr12:57906462-57906737(+)$1	1	53	93	16.5507
(((((((.(((....((((....))))..))).)))))))	chr16:30370500-30370759(-)$1	1	94	134	11.7927
.((.(((.((((((((((.....))))))).))).))).)	chr17:57760167-57760428(+)$1	1	107	147	14.1647
(((((((..(((((..((.....))....))))).)))..	chr17:1564186-1564418(-)$1	1	53	93	13.3422
(((((((((((((.(((......))).))))..)))).))	chr17:80042666-80042894(-)$1	1	117	157	12.3369
((..((((.(.(..((((.....)))).).).))))....	chr10:1046629-1046882(+)$1	1	155	195	14.8655
((..((((.((.((.(((...))).)).)).))))))).)	chr5:169140930-169141188(+)$1	1	142	182	12.2617
((((((((((((((((......)))).)))))))))...)	chr6:31762708-31762927(-)$1	1	96	136	13.8468
((.(((((((.(((..(((...)))..)))))))))).))	chr9:71835700-71835996(+)$1	1	50	90	13.9606
.(((((((.....(((((.....)))))..))))))).))	chr14:65241844-65242197(-)$1	1	203	243	12.2780
((..((.(((((..(((......)))..))))).))..))	chr1:6662562-6662792(-)$1	1	24	64	13.5479
((.(((((((((..(((.(.....).)))..)))))))))	chr7:128486280-128486581(+)$1	1	140	180	14.5649
....(((((.(((...(((....)))...)))))))))))	chr1:19438931-19439161(-)$1	1	77	117	13.5435
((((((((((.(((((((.....))))...)))...))))	chr6:150038889-150039178(-)$1	1	239	279	15.1574
((..(((((((((..(((.....))).)))))))))...)	chr10:6130909-6131315(+)$1	1	61	101	18.3224
((.((((..((.((..((......)).))))..)))).))	chrX:53227571-53227805(-)$1	1	48	88	11.8476
((..(.(((...((((.........))))....))))..)	chr12:6625912-6626174(+)$1	1	176	216	10.9778
.(..(((((((.((.(((....)))))...))).))))..	chr3:184043167-184043371(+)$1	1	77	117	12.5886
.(((((((.(((...(((....)))...))))))))))..	chr16:2814744-2814963(+)$1	1	127	167	13.9156
((.((((...(((.((.(....).))))).)))).))).)	chr12:6691238-6691483(-)$1	1	189	229	11.5626
((..(((((((((.(((......))).)))))))))))))	chr1:19414213-19414467(-)$1	1	162	202	16.2350
(....((((((((((((......))).)))))))))..))	chr3:184019295-184019535(+)$1	1	43	83	15.8994
...(((((...((((((......))).))).)))))....	chr15:91025091-91025365(+)$1	1	74	114	16.6565
.(.(((((..(.((.(((...))).)).)..))))))..)	chr19:11118477-11118717(+)$1	1	102	142	13.9232

#PSSM
b : 0.23	! : 0.15	g : 0.11	c : 0.11	e : 0.07	# : 0.07	i : 0.03	= : 0.03	[ : 0.03	a : 0.01	: : 0.01	" : 0.01	d : 0.01	$ : 0.01	
b : 0.21	c : 0.15	g : 0.15	e : 0.09	# : 0.09	a : 0.05	! : 0.03	: : 0.03	i : 0.03	d : 0.03	[ : 0.01	" : 0.01	= : 0.01	
[ : 0.19	! : 0.15	e : 0.15	c : 0.11	g : 0.09	# : 0.09	d : 0.05	b : 0.03	i : 0.03	a : 0.01	= : 0.01	
e : 0.27	! : 0.17	d : 0.11	c : 0.07	i : 0.07	g : 0.07	# : 0.05	b : 0.03	[ : 0.03	" : 0.01	f : 0.01	= : 0.01	
e : 0.27	d : 0.15	i : 0.11	c : 0.09	b : 0.07	g : 0.07	h : 0.03	! : 0.03	# : 0.03	" : 0.01	f : 0.01	= : 0.01	a : 0.01	
e : 0.23	d : 0.15	i : 0.13	g : 0.07	" : 0.05	[ : 0.05	c : 0.05	b : 0.05	h : 0.03	! : 0.03	f : 0.03	# : 0.01	= : 0.01	
e : 0.23	c : 0.13	d : 0.13	i : 0.13	g : 0.07	[ : 0.05	" : 0.05	h : 0.03	f : 0.03	! : 0.01	# : 0.01	b : 0.01	= : 0.01	
e : 0.17	i : 0.13	c : 0.11	" : 0.09	d : 0.09	g : 0.07	[ : 0.05	! : 0.05	h : 0.03	# : 0.03	f : 0.03	a : 0.01	b : 0.01	= : 0.01	
c : 0.19	! : 0.13	i : 0.11	[ : 0.09	" : 0.07	e : 0.05	# : 0.05	f : 0.05	d : 0.05	h : 0.03	g : 0.03	b : 0.01	$ : 0.01	= : 0.01	
c : 0.15	b : 0.11	! : 0.09	i : 0.09	e : 0.07	d : 0.07	" : 0.07	[ : 0.05	# : 0.05	h : 0.03	f : 0.03	g : 0.03	a : 0.01	$ : 0.01	= : 0.01	
c : 0.19	d : 0.11	b : 0.09	i : 0.09	[ : 0.07	e : 0.07	# : 0.07	g : 0.05	h : 0.03	! : 0.03	f : 0.03	" : 0.03	$ : 0.01	a : 0.01	
c : 0.21	[ : 0.15	# : 0.11	g : 0.09	d : 0.09	i : 0.09	e : 0.05	h : 0.03	" : 0.03	! : 0.01	f : 0.01	a : 0.01	$ : 0.01	
c : 0.19	b : 0.13	g : 0.11	d : 0.11	" : 0.09	# : 0.07	! : 0.07	e : 0.05	i : 0.05	f : 0.01	a : 0.01	$ : 0.01	
" : 0.13	b : 0.13	c : 0.11	! : 0.11	g : 0.11	[ : 0.09	e : 0.07	# : 0.07	d : 0.07	f : 0.01	i : 0.01	
[ : 0.23	c : 0.19	" : 0.11	! : 0.11	d : 0.11	g : 0.09	# : 0.05	e : 0.03	b : 0.01	
c : 0.52	d : 0.15	g : 0.09	! : 0.07	e : 0.03	b : 0.03	" : 0.03	[ : 0.01	
c : 0.56	b : 0.11	d : 0.11	g : 0.09	e : 0.03	o : 0.01	r : 0.01	[ : 0.01	
c : 0.39	o : 0.23	d : 0.11	b : 0.09	g : 0.05	l : 0.01	e : 0.01	[ : 0.01	r : 0.01	a : 0.01	
n : 0.39	o : 0.27	l : 0.09	m : 0.09	d : 0.03	c : 0.03	g : 0.01	a : 0.01	r : 0.01	
n : 0.41	o : 0.27	l : 0.15	m : 0.13	r : 0.01	
n : 0.41	o : 0.27	l : 0.13	m : 0.13	g : 0.01	r : 0.01	
n : 0.41	o : 0.27	m : 0.13	c : 0.07	l : 0.05	g : 0.01	r : 0.01	
n : 0.41	o : 0.25	c : 0.15	d : 0.05	g : 0.03	m : 0.03	r : 0.01	a : 0.01	
c : 0.52	d : 0.13	g : 0.09	b : 0.09	o : 0.03	e : 0.03	n : 0.01	r : 0.01	] : 0.01	
c : 0.47	b : 0.15	d : 0.13	g : 0.09	e : 0.03	] : 0.03	3 : 0.01	a : 0.01	r : 0.01	
c : 0.39	d : 0.15	b : 0.11	g : 0.09	3 : 0.05	e : 0.05	] : 0.05	2 : 0.03	4 : 0.01	
] : 0.27	c : 0.13	d : 0.13	3 : 0.11	g : 0.09	e : 0.05	4 : 0.05	2 : 0.05	b : 0.05	
c : 0.19	3 : 0.13	g : 0.09	d : 0.09	] : 0.07	i : 0.07	b : 0.05	e : 0.05	4 : 0.05	2 : 0.05	h : 0.03	f : 0.01	a : 0.01	
c : 0.23	d : 0.11	g : 0.09	b : 0.09	3 : 0.09	i : 0.07	e : 0.05	4 : 0.05	2 : 0.05	h : 0.03	a : 0.03	f : 0.01	
c : 0.19	] : 0.09	d : 0.09	2 : 0.07	g : 0.07	e : 0.07	4 : 0.07	b : 0.07	i : 0.07	3 : 0.05	h : 0.03	f : 0.03	
c : 0.17	] : 0.15	2 : 0.09	e : 0.09	d : 0.09	i : 0.07	b : 0.05	g : 0.05	h : 0.03	4 : 0.03	f : 0.03	3 : 0.03	a : 0.01	
e : 0.17	c : 0.15	i : 0.11	d : 0.09	2 : 0.07	g : 0.07	] : 0.05	b : 0.05	h : 0.03	4 : 0.03	f : 0.03	3 : 0.03	a : 0.01	
e : 0.21	i : 0.13	d : 0.11	c : 0.11	g : 0.07	4 : 0.05	] : 0.05	f : 0.05	2 : 0.05	h : 0.03	b : 0.03	3 : 0.01	
e : 0.21	d : 0.15	i : 0.13	c : 0.11	g : 0.11	] : 0.07	h : 0.03	4 : 0.03	f : 0.03	2 : 0.01	b : 0.01	3 : 0.01	
e : 0.19	d : 0.13	i : 0.13	c : 0.11	g : 0.09	b : 0.07	] : 0.07	h : 0.03	4 : 0.03	f : 0.03	2 : 0.01	3 : 0.01	
e : 0.19	c : 0.17	i : 0.13	g : 0.11	d : 0.09	4 : 0.07	b : 0.05	3 : 0.03	2 : 0.03	f : 0.01	6 : 0.01	a : 0.01	
c : 0.15	e : 0.13	g : 0.11	3 : 0.09	2 : 0.09	4 : 0.09	a : 0.05	] : 0.05	i : 0.05	d : 0.05	f : 0.01	6 : 0.01	= : 0.01	
c : 0.13	2 : 0.13	e : 0.11	g : 0.09	3 : 0.09	] : 0.09	4 : 0.07	b : 0.05	i : 0.05	d : 0.05	f : 0.01	6 : 0.01	= : 0.01	
b : 0.13	g : 0.11	e : 0.11	] : 0.11	4 : 0.09	c : 0.07	3 : 0.07	2 : 0.07	i : 0.05	d : 0.05	6 : 0.01	= : 0.01	8 : 0.01	
b : 0.21	g : 0.13	e : 0.13	c : 0.09	d : 0.09	i : 0.05	4 : 0.05	2 : 0.03	a : 0.03	: : 0.03	F : 0.01	6 : 0.01	= : 0.01	8 : 0.01	

#score	693.4784617911045
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_UTR_m1_run1.txt

#BEAR
egggggggnnnnngggggg	chr2:85772082-85772330(+)$1	248	225	244	11.6516
=======oooooo======	chr17:79801302-79801592(-)$1	290	52	71	8.9780
iiiiiiiinnnnniiiiii	chr11:75111333-75111659(+)$1	326	165	184	12.4464
####ddddnnnnndddd22	chr8:97243080-97243373(-)$1	293	31	50	10.6727
eeee[cccnnnnnccc22e	chr3:184052710-184053008(+)$1	298	205	224	11.0615
d!!eeeeennnnneeeee2	chr6:27809333-27809577(+)$1	244	65	84	9.9818
ddd!!cccnnnnncccddd	chr5:179147314-179147562(+)$1	248	15	34	11.1783
hhhh[cccnnnnnccc]hh	chr18:47017930-47018195(-)$1	265	182	201	11.0369
d[ffffffnnnnnffffff	chr9:127998515-127998793(-)$1	278	249	268	9.8090
[ccc[cccnnnnncccccc	chr17:8076671-8076902(-)$1	231	158	177	11.9900
eeeee[bbnnnnnbb]eee	chr2:187368764-187369056(+)$1	292	102	121	9.8650
cc"""cccnnnnncccccc	chr17:37360812-37361058(+)$1	246	172	191	11.9297
:cccddddnnnnndddd]c	chrX:70793452-70793759(+)$1	307	15	34	10.1103
[ccc[cccnnnnncccccc	chr17:8076713-8076964(-)$1	251	220	239	11.9900
=======oooooo======	chr8:33370954-33371172(+)$1	218	29	48	8.9780
dd!!ddddnnnnndddddd	chr19:47104519-47104794(+)$1	275	223	242	10.6540
=gggggggnnnnngggggg	chr11:67810673-67810988(+)$1	315	17	36	11.8564
#ccc!!bbnnnnnbb22cc	chr12:104341409-104341685(+)$1	276	105	124	10.5431
iiiiiiiinnnnniiiiii	chr11:122929941-122930216(-)$1	275	251	270	12.4464
========nnnnn======	chr12:76449748-76449964(-)$1	216	182	201	12.9380
b[ffffffnnnnnffffff	chr15:66795598-66795830(-)$1	232	103	122	9.6483
cc!!ddddnnnnndddd]c	chr19:3053642-3053907(-)$1	265	68	87	11.4695
[gggggggnnnnngggggg	chr3:142838710-142838970(+)$1	260	122	141	11.8903
[bb[ddddnnnnndddd]b	chr17:8076658-8076871(-)$1	213	37	56	10.6357
========nnnnn======	chr12:76449740-76449948(-)$1	208	166	185	12.9380
ccc[ddddnnnnndddd]c	chr1:45244215-45244460(+)$1	245	26	45	11.3537
=======oooooo======	chr8:33370926-33371150(+)$1	224	57	76	8.9780
eee"""bbnnnnnbb333e	chr10:79800301-79800545(+)$1	244	142	161	10.6763

#otherMatches

#Seq PSSM
UUUCAGGAUCUAUUUUUGG	chr2:85772082-85772330(+)$1	248	225	244	11.6516
AAAUUCCGUCUGUGGGAUU	chr17:79801302-79801592(-)$1	290	52	71	8.9780
UGUGCUGCGUUCUGUGGCA	chr11:75111333-75111659(+)$1	326	165	184	12.4464
CCGUAUCUGAAAGAGGUUA	chr8:97243080-97243373(-)$1	293	31	50	10.6727
AGAUAUAUUAUAUAUAAAG	chr3:184052710-184053008(+)$1	298	205	224	11.0615
CAAGAUUUGGCUAAAAUUA	chr6:27809333-27809577(+)$1	244	65	84	9.9818
AGCCCUGGGCCAGCCAGCU	chr5:179147314-179147562(+)$1	248	15	34	11.1783
UAUACUGAAUGAGUUACUG	chr18:47017930-47018195(-)$1	265	182	201	11.0369
AAUAAAUGUUUGUUAUUUA	chr9:127998515-127998793(-)$1	278	249	268	9.8090
UUAUGCUGAUUAGCAGAUA	chr17:8076671-8076902(-)$1	231	158	177	11.9900
UUUGUGUUGAAAAAAGAUA	chr2:187368764-187369056(+)$1	292	102	121	9.8650
CUCUCUGCUUCUUGCAAGG	chr17:37360812-37361058(+)$1	246	172	191	11.9297
AGCCUGAAGAAAGUUCGUG	chrX:70793452-70793759(+)$1	307	15	34	10.1103
UUAUGCUGAUUAGCAGAUA	chr17:8076713-8076964(-)$1	251	220	239	11.9900
UAUAAGAUgauccuuuugu	chr8:33370954-33371172(+)$1	218	29	48	8.9780
UAACGGGGCAGGACCCCUG	chr19:47104519-47104794(+)$1	275	223	242	10.6540
CGGGAGGCCUCCUGCCUUC	chr11:67810673-67810988(+)$1	315	17	36	11.8564
UGUUUUGGAUGCCCCCUAA	chr12:104341409-104341685(+)$1	276	105	124	10.5431
CCAGGCAGCCAUCUUGUCU	chr11:122929941-122930216(-)$1	275	251	270	12.4464
UUUGAAGGGUAAACCUUUG	chr12:76449748-76449964(-)$1	216	182	201	12.9380
CAGACAGCCCUAUGCUGUC	chr15:66795598-66795830(-)$1	232	103	122	9.6483
AUGAUGGCGAGAAGUCGGA	chr19:3053642-3053907(-)$1	265	68	87	11.4695
UCCUUUGGUCCAGUCGGAG	chr3:142838710-142838970(+)$1	260	122	141	11.8903
ugaaacgugauuaacgucu	chr17:8076658-8076871(-)$1	213	37	56	10.6357
UUUGAAGGGUAAACCUUUG	chr12:76449740-76449948(-)$1	208	166	185	12.9380
UUGCAGCGUGCAUCGCUUC	chr1:45244215-45244460(+)$1	245	26	45	11.3537
UAUAAGAUgauccuuuugu	chr8:33370926-33371150(+)$1	224	57	76	8.9780
CUAAAAACUUCAUGUGUCU	chr10:79800301-79800545(+)$1	244	142	161	10.6763

#DB
)(((((((.....))))))	chr2:85772082-85772330(+)$1	1	225	244	11.6516
(((((((......))))))	chr17:79801302-79801592(-)$1	1	52	71	8.9780
((((((((.....))))))	chr11:75111333-75111659(+)$1	1	165	184	12.4464
....((((.....))))..	chr8:97243080-97243373(-)$1	1	31	50	10.6727
((((.(((.....)))..)	chr3:184052710-184053008(+)$1	1	205	224	11.0615
(..(((((.....))))).	chr6:27809333-27809577(+)$1	1	65	84	9.9818
(((..(((.....))))))	chr5:179147314-179147562(+)$1	1	15	34	11.1783
((((.(((.....))).))	chr18:47017930-47018195(-)$1	1	182	201	11.0369
(.((((((.....))))))	chr9:127998515-127998793(-)$1	1	249	268	9.8090
.(((.(((.....))))))	chr17:8076671-8076902(-)$1	1	158	177	11.9900
(((((.((.....)).)))	chr2:187368764-187369056(+)$1	1	102	121	9.8650
((...(((.....))))))	chr17:37360812-37361058(+)$1	1	172	191	11.9297
.(((((((.....)))).)	chrX:70793452-70793759(+)$1	1	15	34	10.1103
.(((.(((.....))))))	chr17:8076713-8076964(-)$1	1	220	239	11.9900
(((((((......))))))	chr8:33370954-33371172(+)$1	1	29	48	8.9780
((..((((.....))))))	chr19:47104519-47104794(+)$1	1	223	242	10.6540
((((((((.....))))))	chr11:67810673-67810988(+)$1	1	17	36	11.8564
.(((..((.....))..))	chr12:104341409-104341685(+)$1	1	105	124	10.5431
((((((((.....))))))	chr11:122929941-122930216(-)$1	1	251	270	12.4464
((((((((.....))))))	chr12:76449748-76449964(-)$1	1	182	201	12.9380
(.((((((.....))))))	chr15:66795598-66795830(-)$1	1	103	122	9.6483
((..((((.....)))).)	chr19:3053642-3053907(-)$1	1	68	87	11.4695
.(((((((.....))))))	chr3:142838710-142838970(+)$1	1	122	141	11.8903
.((.((((.....)))).)	chr17:8076658-8076871(-)$1	1	37	56	10.6357
((((((((.....))))))	chr12:76449740-76449948(-)$1	1	166	185	12.9380
(((.((((.....)))).)	chr1:45244215-45244460(+)$1	1	26	45	11.3537
(((((((......))))))	chr8:33370926-33371150(+)$1	1	57	76	8.9780
(((...((.....))...)	chr10:79800301-79800545(+)$1	1	142	161	10.6763

#PSSM
= : 0.21	e : 0.14	d : 0.14	[ : 0.14	c : 0.10	i : 0.07	# : 0.07	h : 0.03	: : 0.03	b : 0.03	
c : 0.24	= : 0.17	g : 0.10	e : 0.10	i : 0.07	d : 0.07	[ : 0.07	# : 0.03	! : 0.03	h : 0.03	b : 0.03	
= : 0.17	c : 0.17	g : 0.10	e : 0.10	! : 0.10	i : 0.07	f : 0.07	# : 0.03	d : 0.03	h : 0.03	" : 0.03	b : 0.03	
= : 0.17	c : 0.14	g : 0.10	e : 0.10	! : 0.10	i : 0.07	f : 0.07	" : 0.07	[ : 0.07	# : 0.03	h : 0.03	
d : 0.21	= : 0.17	[ : 0.14	g : 0.10	i : 0.07	e : 0.07	! : 0.07	f : 0.07	" : 0.07	
d : 0.21	c : 0.21	= : 0.17	g : 0.10	i : 0.07	f : 0.07	e : 0.03	[ : 0.03	! : 0.03	" : 0.03	
d : 0.21	c : 0.21	= : 0.17	g : 0.10	b : 0.10	i : 0.07	f : 0.07	e : 0.03	
d : 0.21	c : 0.21	g : 0.10	o : 0.10	b : 0.10	i : 0.07	f : 0.07	= : 0.07	e : 0.03	
n : 0.89	o : 0.10	
n : 0.89	o : 0.10	
n : 0.89	o : 0.10	
n : 0.89	o : 0.10	
n : 0.89	o : 0.10	
d : 0.21	c : 0.21	= : 0.17	g : 0.10	b : 0.10	i : 0.07	f : 0.07	e : 0.03	
d : 0.21	c : 0.21	= : 0.17	g : 0.10	b : 0.10	i : 0.07	f : 0.07	e : 0.03	
d : 0.21	c : 0.21	= : 0.17	g : 0.10	i : 0.07	f : 0.07	e : 0.03	] : 0.03	2 : 0.03	3 : 0.03	
d : 0.24	= : 0.17	g : 0.10	c : 0.10	i : 0.07	2 : 0.07	e : 0.07	f : 0.07	] : 0.03	3 : 0.03	
= : 0.17	c : 0.14	] : 0.14	g : 0.10	i : 0.07	2 : 0.07	e : 0.07	d : 0.07	f : 0.07	h : 0.03	3 : 0.03	
c : 0.24	= : 0.17	g : 0.10	e : 0.10	i : 0.07	2 : 0.07	d : 0.07	f : 0.07	h : 0.03	b : 0.03	

#score	307.7081490322963
#seq	28
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_transcript_m3_run2.txt

#BEAR
bb[gggggggooooooggggggg]b	chr1:146728171-146728424(+)$1	253	43	68	11.9834
ggggccccccmmmmccc4444ccc]	chr2:32780040-32780381(+)$1	341	284	309	10.0217
==========mmmm===========	chr2:236450734-236451044(+)$1	310	206	231	16.4171
================[ccc[dddd	chr10:105595988-105596250(-)$1	262	52	77	10.9345
gggggg[cccmmmmccc]ggggggg	chr4:99950167-99950423(+)$1	256	35	60	11.9098
[=============!!cccccca[g	chr6:128490666-128490924(-)$1	258	28	53	11.0387
==========nnnnn==========	chr6:1907974-1908241(-)$1	267	212	237	14.5209
[a[gggggggmmmmggggggga]cc	chr6:158993817-158994133(+)$1	316	256	281	12.5432
==========oooooo=========	chr6:75965324-75965595(-)$1	271	102	127	15.9455
f!!gggggggmmmmgggggggffff	chr6:2194557-2194822(-)$1	265	138	163	11.8334
$$$gggggggmmmmgggggggccc]	chr16:70065551-70065844(-)$1	293	98	123	11.7600
!iiiiiiiiimmmmiiiiiiiii22	chr14:21702368-21702594(-)$1	226	28	53	14.5476
==========mmmm===========	chr16:81660677-81661039(+)$1	362	133	158	16.4171
==========mmmm==========E	chr6:71200357-71200658(+)$1	301	229	254	15.2179
[============bb==========	chr10:124186559-124186884(+)$1	325	192	217	13.0724
====================fffff	chr2:216231321-216231552(-)$1	231	40	65	12.3294
==========oooooo=========	chr8:606990-607259(-)$1	269	30	55	15.9455
]iiiiiiiii4444ggggggg]fff	chr12:22619492-22619789(-)$1	297	221	246	11.2712
iiiiii[cccooooooccc333iii	chr17:29487742-29488042(+)$1	300	258	283	12.6049
"""gggggggmmmmggggggg333d	chr12:110873967-110874245(-)$1	278	132	157	12.6484
==========oooooo=========	chr21:40669142-40669407(-)$1	265	21	46	15.9455
###gggggggmmmmgggggggffff	chr3:194174741-194175049(-)$1	308	253	278	11.8945
[gggggggooooooggggggg]ccc	chrX:133075710-133075963(-)$1	253	110	135	11.8553
c[iiiiiiiiillliiiiiiiiicc	chr10:93586459-93586765(+)$1	306	145	170	13.8940
[gggggggooooooggggggg22dd	chr11:86991467-86991770(+)$1	303	188	213	10.9486
gggggggcccmmmmccc]ggggggg	chrX:73231442-73231729(+)$1	287	195	220	11.9022
==========oooooo=========	chr7:124498577-124498915(-)$1	338	294	319	15.9455
ggggggggggooooooggggggg22	chr17:56082387-56082623(-)$1	236	203	228	12.2197
==========rrrrrrrrr======	chr5:65451446-65451697(+)$1	251	150	175	11.5426
fiiiiiiiiimmmmiiiiiiiii::	chr6:17623829-17624113(-)$1	284	35	60	12.7280
iiiiiiii[bblllbbiiiiiiiii	chr8:86094670-86095012(+)$1	342	48	73	12.6344
==========mmmm===========	chr3:142754871-142755137(+)$1	266	185	210	16.4171
==========mmmm==========:	chr6:45303013-45303294(-)$1	281	255	280	15.3308
:iiiiiiiiimmmmiiiiiiiii:G	chr12:11181789-11182048(-)$1	259	133	158	12.1986
==========mmmm===========	chr11:9610739-9611002(+)$1	263	51	76	16.4171
==========mmmm===========	chr6:128716868-128717164(-)$1	296	20	45	16.4171
[iiiiiiiiillliiiiiiiii]a]	chr6:131197897-131198202(-)$1	305	266	291	14.1048
Diiiiiiiiimmmmiiiiiiiii::	chr6:127633622-127633884(-)$1	262	143	168	11.5781
==========nnnnn==========	chr8:17813914-17814168(+)$1	254	226	251	14.5209
=!!gggggggmmmmggggggg]===	chr2:42531428-42531675(+)$1	247	66	91	13.5490
giiiiiiiiiooooooiiiiiiiii	chr14:31106833-31107099(+)$1	266	226	251	14.8233
cccgggggggmmmmggggggg]ccc	chr6:88227987-88228277(-)$1	290	103	128	12.0625
[iiiiiiiiimmmmiiiiiiiiihh	chr13:113567095-113567542(+)$1	447	17	42	14.5780
bb[gggggggooooooggggggg]b	chr5:179047716-179047943(-)$1	227	75	100	11.9834
iiiiiii[bbmmmmbb]iiiiiiii	chr15:25233415-25233656(+)$1	241	30	55	13.0675
==========nnnnn==========	chr10:76082156-76082406(+)$1	250	63	88	14.5209
ii[ccc[cccoooooocccccc]ii	chr2:177183333-177183656(+)$1	323	65	90	11.2134
==========mmmm===========	chr4:83292034-83292307(-)$1	273	158	183	16.4171
ddiiiiiiiiillliiiiiiiii::	chr14:31404136-31404396(-)$1	260	68	93	11.4036
===[ccc[bboooooobb]ccc===	chr2:162016963-162017214(+)$1	251	193	218	11.0045

#otherMatches

#Seq PSSM
UCGUGAGUAGGUUGUACUAUUUAAG	chr1:146728171-146728424(+)$1	253	43	68	11.9834
aucccuuugggaggccaagaugaga	chr2:32780040-32780381(+)$1	341	284	309	10.0217
CCAGGGCCAGGGACUUGGCCUUGGC	chr2:236450734-236451044(+)$1	310	206	231	16.4171
uauggaugugucuguguguggguuu	chr10:105595988-105596250(-)$1	262	52	77	10.9345
CAUAUUUUAAAUUUUUGUGAUAUGU	chr4:99950167-99950423(+)$1	256	35	60	11.9098
AAAGAAAUGCUUAACAAUAACAAGA	chr6:128490666-128490924(-)$1	258	28	53	11.0387
UAUGGACAUGCAACUUAUGUUUAUA	chr6:1907974-1908241(-)$1	267	212	237	14.5209
guguauguaugugugugCAUGAGAU	chr6:158993817-158994133(+)$1	316	256	281	12.5432
UGUGUUGAUGAUAUUAUAUUGACAU	chr6:75965324-75965595(-)$1	271	102	127	15.9455
AACUAUAUAUGUAUGUGUGUAUGUU	chr6:2194557-2194822(-)$1	265	138	163	11.8334
UCAAGUGAAGUUCUUUUUGCUGGCC	chr16:70065551-70065844(-)$1	293	98	123	11.7600
AUUCAGAGGCUGGAGUCUCUGAAAU	chr14:21702368-21702594(-)$1	226	28	53	14.5476
caugugggaugacuguuuuaugugu	chr16:81660677-81661039(+)$1	362	133	158	16.4171
UAAUAUGUUUAUGAAAAUAUGUUAC	chr6:71200357-71200658(+)$1	301	229	254	15.2179
UAUUGUGUUAAAUGCACAAGUAGGG	chr10:124186559-124186884(+)$1	325	192	217	13.0724
GCAAUUGUGGGAGCGGGGAUGUCAA	chr2:216231321-216231552(-)$1	231	40	65	12.3294
cagguuuauucuccaaaauaaaccu	chr8:606990-607259(-)$1	269	30	55	15.9455
UUAAAGCUAUCUCAAAAUGUUUUGG	chr12:22619492-22619789(-)$1	297	221	246	11.2712
AUUGAACAAUUGUUUUAUUUCCUUC	chr17:29487742-29488042(+)$1	300	258	283	12.6049
UCAAAUGUAUAAAAAUGUAUUACCA	chr12:110873967-110874245(-)$1	278	132	157	12.6484
GUCGUUGUUUUGUGAUGAGCAGUGA	chr21:40669142-40669407(-)$1	265	21	46	15.9455
UUUGUAGAGUCAAGACUCUACCACU	chr3:194174741-194175049(-)$1	308	253	278	11.8945
ucagaaugcuagCCCAUUUUGUAUA	chrX:133075710-133075963(-)$1	253	110	135	11.8553
cuguuuuuuccauugggaaaaaugu	chr10:93586459-93586765(+)$1	306	145	170	13.8940
uugcuuugugcuccuaaagcacugu	chr11:86991467-86991770(+)$1	303	188	213	10.9486
gcacauuucaccaaugacaaugugc	chrX:73231442-73231729(+)$1	287	195	220	11.9022
AACAAAUUGuuaaauuacaauuugu	chr7:124498577-124498915(-)$1	338	294	319	15.9455
UCAUGUGUCUUUCUGUAGACAUAUC	chr17:56082387-56082623(-)$1	236	203	228	12.2197
UUGAUGUGUAACAGUUUCAUGCAUA	chr5:65451446-65451697(+)$1	251	150	175	11.5426
ugcauuuauuggcuaauagaugcau	chr6:17623829-17624113(-)$1	284	35	60	12.7280
AUGUAGGUAGGUUUCCAUUUGCAUA	chr8:86094670-86095012(+)$1	342	48	73	12.6344
CUAUUGCUUACCAUUAAGUAGUGGA	chr3:142754871-142755137(+)$1	266	185	210	16.4171
AUUGUUUAGAUACAUUUAAAUAAUU	chr6:45303013-45303294(-)$1	281	255	280	15.3308
AAUUUUGUCAUCAAUGAUGAAAUGA	chr12:11181789-11182048(-)$1	259	133	158	12.1986
AGCUGCUUUUGAUGAAAAGCAGCUA	chr11:9610739-9611002(+)$1	263	51	76	16.4171
AAGUUACAUUUCUAAAUGUAAUUUU	chr6:128716868-128717164(-)$1	296	20	45	16.4171
GUCUAUUGUUUAAAACAAUAGAGAA	chr6:131197897-131198202(-)$1	305	266	291	14.1048
ucuuuugggugaaaaucuaagagug	chr6:127633622-127633884(-)$1	262	143	168	11.5781
AAUGAGCUAAGAGAAUUAGUUCAUU	chr8:17813914-17814168(+)$1	254	226	251	14.5209
CUCAUUAGCUACAAAGUUGAUUGAA	chr2:42531428-42531675(+)$1	247	66	91	13.5490
GAUAGGCUGUAUGAAAGCAGUUUGU	chr14:31106833-31107099(+)$1	266	226	251	14.8233
agaaauacauuuauguguauuaucu	chr6:88227987-88228277(-)$1	290	103	128	12.0625
ucuguguguguauguauguaugggg	chr13:113567095-113567542(+)$1	447	17	42	14.5780
GCAGUGAGUUUUGGCUAGCUUAUGG	chr5:179047716-179047943(-)$1	227	75	100	11.9834
UGUUGGGUUUGGGAAAUUUCAACAU	chr15:25233415-25233656(+)$1	241	30	55	13.0675
AAAUUGUGAUACCUCAUUAUAGUUU	chr10:76082156-76082406(+)$1	250	63	88	14.5209
GACACUGUGCUAUUAUGCAGGUUUU	chr2:177183333-177183656(+)$1	323	65	90	11.2134
uguguguguguguguAUAUAUAUAC	chr4:83292034-83292307(-)$1	273	158	183	16.4171
CCUUAAUGAUGGGUUAUUAUUAAAU	chr14:31404136-31404396(-)$1	260	68	93	11.4036
UUUUGUGCGGGAGAAACCACGCGAG	chr2:162016963-162017214(+)$1	251	193	218	11.0045

#DB
((.(((((((......))))))).)	chr1:146728171-146728424(+)$1	1	43	68	11.9834
((((((((((....)))....))).	chr2:32780040-32780381(+)$1	1	284	309	10.0217
((((((((((....)))))))))))	chr2:236450734-236451044(+)$1	1	206	231	16.4171
((((((((((((((((.(((.((((	chr10:105595988-105596250(-)$1	1	52	77	10.9345
((((((.(((....))).)))))))	chr4:99950167-99950423(+)$1	1	35	60	11.9098
.(((((((((((((..(((((((.(	chr6:128490666-128490924(-)$1	1	28	53	11.0387
((((((((((.....))))))))))	chr6:1907974-1908241(-)$1	1	212	237	14.5209
.(.(((((((....)))))))).))	chr6:158993817-158994133(+)$1	1	256	281	12.5432
((((((((((......)))))))))	chr6:75965324-75965595(-)$1	1	102	127	15.9455
(..(((((((....)))))))))))	chr6:2194557-2194822(-)$1	1	138	163	11.8334
...(((((((....)))))))))).	chr16:70065551-70065844(-)$1	1	98	123	11.7600
.(((((((((....)))))))))..	chr14:21702368-21702594(-)$1	1	28	53	14.5476
((((((((((....)))))))))))	chr16:81660677-81661039(+)$1	1	133	158	16.4171
((((((((((....)))))))))))	chr6:71200357-71200658(+)$1	1	229	254	15.2179
.((((((((((((((((((((((((	chr10:124186559-124186884(+)$1	1	192	217	13.0724
(((((((((((((((((((((((((	chr2:216231321-216231552(-)$1	1	40	65	12.3294
((((((((((......)))))))))	chr8:606990-607259(-)$1	1	30	55	15.9455
.)))))))))....))))))).)))	chr12:22619492-22619789(-)$1	1	221	246	11.2712
((((((.(((......)))...)))	chr17:29487742-29488042(+)$1	1	258	283	12.6049
...(((((((....)))))))...)	chr12:110873967-110874245(-)$1	1	132	157	12.6484
((((((((((......)))))))))	chr21:40669142-40669407(-)$1	1	21	46	15.9455
...(((((((....)))))))))))	chr3:194174741-194175049(-)$1	1	253	278	11.8945
.(((((((......))))))).)))	chrX:133075710-133075963(-)$1	1	110	135	11.8553
(.(((((((((...)))))))))))	chr10:93586459-93586765(+)$1	1	145	170	13.8940
.(((((((......)))))))..))	chr11:86991467-86991770(+)$1	1	188	213	10.9486
((((((((((....))).)))))))	chrX:73231442-73231729(+)$1	1	195	220	11.9022
((((((((((......)))))))))	chr7:124498577-124498915(-)$1	1	294	319	15.9455
((((((((((......)))))))..	chr17:56082387-56082623(-)$1	1	203	228	12.2197
((((((((((.........))))))	chr5:65451446-65451697(+)$1	1	150	175	11.5426
)(((((((((....)))))))))..	chr6:17623829-17624113(-)$1	1	35	60	12.7280
((((((((.((...)))))))))))	chr8:86094670-86095012(+)$1	1	48	73	12.6344
((((((((((....)))))))))))	chr3:142754871-142755137(+)$1	1	185	210	16.4171
((((((((((....)))))))))).	chr6:45303013-45303294(-)$1	1	255	280	15.3308
.(((((((((....))))))))).)	chr12:11181789-11182048(-)$1	1	133	158	12.1986
((((((((((....)))))))))))	chr11:9610739-9611002(+)$1	1	51	76	16.4171
((((((((((....)))))))))))	chr6:128716868-128717164(-)$1	1	20	45	16.4171
.(((((((((...))))))))).).	chr6:131197897-131198202(-)$1	1	266	291	14.1048
)(((((((((....)))))))))..	chr6:127633622-127633884(-)$1	1	143	168	11.5781
((((((((((.....))))))))))	chr8:17813914-17814168(+)$1	1	226	251	14.5209
(..(((((((....))))))).)))	chr2:42531428-42531675(+)$1	1	66	91	13.5490
((((((((((......)))))))))	chr14:31106833-31107099(+)$1	1	226	251	14.8233
((((((((((....))))))).)))	chr6:88227987-88228277(-)$1	1	103	128	12.0625
.(((((((((....)))))))))))	chr13:113567095-113567542(+)$1	1	17	42	14.5780
((.(((((((......))))))).)	chr5:179047716-179047943(-)$1	1	75	100	11.9834
(((((((.((....)).))))))))	chr15:25233415-25233656(+)$1	1	30	55	13.0675
((((((((((.....))))))))))	chr10:76082156-76082406(+)$1	1	63	88	14.5209
((.(((.(((......)))))).))	chr2:177183333-177183656(+)$1	1	65	90	11.2134
((((((((((....)))))))))))	chr4:83292034-83292307(-)$1	1	158	183	16.4171
))(((((((((...)))))))))..	chr14:31404136-31404396(-)$1	1	68	93	11.4036
(((.(((.((......)).))))))	chr2:162016963-162017214(+)$1	1	193	218	11.0045

#PSSM
= : 0.40	[ : 0.14	g : 0.10	i : 0.08	b : 0.04	f : 0.04	c : 0.04	$ : 0.02	! : 0.02	] : 0.02	" : 0.02	# : 0.02	: : 0.02	D : 0.02	d : 0.02	
= : 0.42	i : 0.23	g : 0.12	b : 0.04	! : 0.04	a : 0.02	$ : 0.02	" : 0.02	# : 0.02	[ : 0.02	c : 0.02	d : 0.02	
= : 0.42	i : 0.25	g : 0.12	[ : 0.08	! : 0.04	$ : 0.02	" : 0.02	# : 0.02	c : 0.02	
= : 0.40	g : 0.30	i : 0.25	c : 0.02	[ : 0.02	
= : 0.40	g : 0.27	i : 0.25	c : 0.06	
= : 0.40	g : 0.27	i : 0.25	c : 0.06	
= : 0.40	g : 0.25	i : 0.23	[ : 0.06	c : 0.04	
= : 0.40	g : 0.23	i : 0.21	c : 0.10	[ : 0.04	
= : 0.40	g : 0.19	i : 0.19	c : 0.10	o : 0.04	b : 0.04	[ : 0.02	
= : 0.40	g : 0.19	i : 0.19	c : 0.10	b : 0.06	o : 0.04	
m : 0.48	o : 0.25	= : 0.08	n : 0.06	i : 0.04	4 : 0.02	r : 0.02	b : 0.02	l : 0.02	
m : 0.48	o : 0.25	= : 0.08	l : 0.08	n : 0.06	4 : 0.02	r : 0.02	
m : 0.48	o : 0.25	= : 0.08	l : 0.08	n : 0.06	4 : 0.02	r : 0.02	
m : 0.48	o : 0.25	= : 0.06	n : 0.06	l : 0.06	b : 0.02	4 : 0.02	r : 0.02	i : 0.02	
o : 0.21	= : 0.19	g : 0.19	i : 0.16	c : 0.06	n : 0.06	b : 0.06	! : 0.02	r : 0.02	
= : 0.27	o : 0.21	g : 0.19	i : 0.16	c : 0.06	b : 0.04	! : 0.02	r : 0.02	
= : 0.34	g : 0.25	i : 0.19	c : 0.12	[ : 0.02	r : 0.02	] : 0.02	b : 0.02	
= : 0.34	g : 0.25	i : 0.21	c : 0.08	] : 0.04	4 : 0.02	r : 0.02	b : 0.02	
= : 0.34	g : 0.30	i : 0.21	c : 0.08	4 : 0.02	r : 0.02	] : 0.02	
= : 0.36	g : 0.30	i : 0.21	c : 0.08	4 : 0.02	3 : 0.02	
= : 0.34	g : 0.30	i : 0.21	c : 0.06	4 : 0.02	[ : 0.02	f : 0.02	3 : 0.02	
= : 0.34	i : 0.21	g : 0.10	c : 0.10	] : 0.08	f : 0.06	3 : 0.04	d : 0.02	a : 0.02	2 : 0.02	
= : 0.38	i : 0.21	g : 0.10	c : 0.08	f : 0.08	] : 0.06	d : 0.02	a : 0.02	3 : 0.02	2 : 0.02	
= : 0.38	c : 0.12	i : 0.10	f : 0.08	: : 0.08	] : 0.04	d : 0.04	g : 0.04	2 : 0.04	[ : 0.02	3 : 0.02	a : 0.02	h : 0.02	
= : 0.34	i : 0.10	c : 0.08	f : 0.08	: : 0.08	] : 0.06	d : 0.06	g : 0.06	b : 0.04	2 : 0.04	E : 0.02	G : 0.02	h : 0.02	

#score	666.082991554572
#seq	50
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_transcript_m3_run2.txt

#BEAR
dddqqqqqqqqddd	chr20:47902998-47903237(+)$1	239	53	67	13.4315
dddqqqqqqqqddd	chr7:151742648-151742882(+)$1	234	29	43	13.4315
cccqqqqqqqqccc	chr8:23391769-23392018(+)$1	249	208	222	13.9561
cccqqqqqqqqccc	chrX:18314374-18314635(-)$1	261	40	54	13.9561
cccqqqqqqqqccc	chr1:212224310-212224686(+)$1	376	286	300	13.9561
eeeqqqqqqqqeee	chr22:20927918-20928199(+)$1	281	26	40	12.8270
cccqqqqqqqqccc	chr1:167965959-167966228(+)$1	269	101	115	13.9561
eeeqqqqqqqqeee	chr15:90745613-90745950(+)$1	337	72	86	12.8270
ccaqqqqqqqqa]c	chr2:114694293-114694590(+)$1	297	128	142	13.5094
dddqqqqqqqqddd	chr14:68508355-68508671(+)$1	316	187	201	13.4315
cccqqqqqqqqccc	chr1:227254173-227254529(-)$1	356	242	256	13.9561
dddqqqqqqqqddd	chr21:39475222-39475540(-)$1	318	80	94	13.4315
cccqqqqqqqqccc	chr8:106480181-106480614(+)$1	433	188	202	13.9561
cccqqqqqqqqccc	chr11:107884070-107884371(+)$1	301	260	274	13.9561
fffqqqqqqqqfff	chr12:62735810-62736087(+)$1	277	114	128	12.3228
cccqqqqqqqqccc	chr1:51851786-51852101(-)$1	315	3	17	13.9561
eeeqqqqqqqqeee	chrX:73186611-73186855(+)$1	244	143	157	12.8270
eeeqqqqqqqqeee	chr7:103774186-103774550(-)$1	364	227	241	12.8270
dddqqqqqqqqddd	chr7:138225207-138225511(+)$1	304	165	179	13.4315
dddqqqqqqqqddd	chr2:27011832-27012123(+)$1	291	258	272	13.4315
dddqqqqqqqqddd	chr4:80944757-80945046(-)$1	289	155	169	13.4315
cccqqqqqqqqccc	chr7:149186707-149187063(-)$1	356	34	48	13.9561
cccqqqqqqqqccc	chr6:35344146-35344415(+)$1	269	37	51	13.9561
dddqqqqqqqqddd	chr4:103639439-103639779(-)$1	340	286	300	13.4315
cccqqqqqqqqccc	chr8:130533757-130534039(-)$1	282	129	143	13.9561
cccqqqqqqqqccc	chr19:15944388-15944645(+)$1	257	118	132	13.9561
eeeqqqqqqqqeee	chr2:122239891-122240199(-)$1	308	248	262	12.8270
dddqqqqqqqqddd	chr7:43689413-43689750(-)$1	337	218	232	13.4315
cccqqqqqqqqccc	chr8:130530980-130531228(-)$1	248	20	34	13.9561
cccqqqqqqqqccc	chr19:54642121-54642394(+)$1	273	117	131	13.9561
dddqqqqqqqqddd	chrX:134678371-134678687(+)$1	316	54	68	13.4315
ccaqqqqqqqqa]c	chr4:48203295-48203651(-)$1	356	147	161	13.5094
eeeqqqqqqqqeee	chr1:32828517-32828803(-)$1	286	122	136	12.8270
eeeqqqqqqqqeee	chr2:39345207-39345509(-)$1	302	276	290	12.8270
dddqqqqqqqqddd	chr7:17903931-17904204(-)$1	273	190	204	13.4315
cccqqqqqqqqccc	chr15:25661940-25662260(-)$1	320	20	34	13.9561
cccqqqqqqqqccc	chr2:26484632-26485009(+)$1	377	199	213	13.9561
c[aqqqqqqqqacc	chr7:141476835-141477098(+)$1	263	22	36	13.5323
fffqqqqqqqqfff	chr1:175984119-175984403(-)$1	284	151	165	12.3228
cccqqqqqqqqccc	chr8:130475398-130475643(-)$1	245	10	24	13.9561
cccqqqqqqqqccc	chr11:6507083-6507304(+)$1	221	140	154	13.9561
eeeqqqqqqqqeee	chr12:116614354-116614601(-)$1	247	114	128	12.8270
dddqqqqqqqqddd	chr2:15529938-15530221(-)$1	283	93	107	13.4315
g[aqqqqqqqqagg	chr6:35338937-35339201(+)$1	264	166	180	13.0061
!!aqqqqqqqqa22	chr11:107882914-107883218(+)$1	304	25	39	12.3404
gggqqqqqqqqggg	chr9:108472334-108472667(+)$1	333	299	313	12.8715
dddqqqqqqqqddd	chr4:120388814-120389084(+)$1	270	67	81	13.4315
cccqqqqqqqqccc	chr18:2667109-2667444(+)$1	335	217	231	13.9561
eeaqqqqqqqqa]e	chr8:130532784-130533064(-)$1	280	161	175	12.9379
dddqqqqqqqqddd	chr1:95628792-95629122(+)$1	330	212	226	13.4315
cccqqqqqqqqccc	chr18:9581660-9581991(-)$1	331	150	164	13.9561
cccqqqqqqqqccc	chr12:80277110-80277435(-)$1	325	15	29	13.9561
dddqqqqqqqqddd	chr1:35840721-35841025(+)$1	304	76	90	13.4315
cccqqqqqqqqccc	chr2:168713072-168713388(-)$1	316	118	132	13.9561
fffqqqqqqqqfff	chr18:9571831-9572061(-)$1	230	192	206	12.3228
gggqqqqqqqqggg	chr6:10911755-10912060(+)$1	305	229	243	12.8715
!!aqqqqqqqqa22	chr9:125916346-125916599(-)$1	253	87	101	12.3404
cccqqqqqqqqccc	chr1:94340251-94340570(-)$1	319	148	162	13.9561
dddqqqqqqqqddd	chr20:45841841-45842154(-)$1	313	136	150	13.4315
cccqqqqqqqqccc	chr7:135827729-135828025(+)$1	296	46	60	13.9561
cccqqqqqqqqccc	chr17:27432397-27432710(-)$1	313	47	61	13.9561
dddqqqqqqqqddd	chr7:143002961-143003256(+)$1	295	23	37	13.4315
f[aqqqqqqqqaff	chr11:5509411-5509723(-)$1	312	8	22	12.7404
===qqqqqqqq===	chr22:20079926-20080197(+)$1	271	137	151	12.9248
cccqqqqqqqqccc	chr7:155554582-155554845(+)$1	263	57	71	13.9561
cccqqqqqqqqccc	chr8:54884635-54884889(-)$1	254	65	79	13.9561
eeeqqqqqqqqeee	chr7:99113768-99114023(+)$1	255	69	83	12.8270
ccaqqqqqqqqa]c	chr13:39587725-39588008(-)$1	283	159	173	13.5094
cccqqqqqqqqccc	chr7:106969558-106969913(-)$1	355	170	184	13.9561
cccqqqqqqqqccc	chr1:61099868-61100167(-)$1	299	204	218	13.9561
cccqqqqqqqqccc	chr7:139097891-139098295(+)$1	404	176	190	13.9561
dddqqqqqqqqddd	chr4:104113583-104113810(-)$1	227	142	156	13.4315
dddqqqqqqqqddd	chrX:110935244-110935590(+)$1	346	148	162	13.4315
eeeqqqqqqqqeee	chr17:33979864-33980252(+)$1	388	361	375	12.8270

#otherMatches

#Seq PSSM
ccuuuccucauagg	chr20:47902998-47903237(+)$1	239	53	67	13.4315
ucaugaucuuuuga	chr7:151742648-151742882(+)$1	234	29	43	13.4315
agcuuuccauugcu	chr8:23391769-23392018(+)$1	249	208	222	13.9561
guauauuuguuugc	chrX:18314374-18314635(-)$1	261	40	54	13.9561
GAAcucaugauuuc	chr1:212224310-212224686(+)$1	376	286	300	13.9561
UCUCAGUUAUAAGA	chr22:20927918-20928199(+)$1	281	26	40	12.8270
ggauuuuuucuucc	chr1:167965959-167966228(+)$1	269	101	115	13.9561
ACAUCUGCUUCUGU	chr15:90745613-90745950(+)$1	337	72	86	12.8270
ggcuucuagauguc	chr2:114694293-114694590(+)$1	297	128	142	13.5094
UGCCUAUCUCUGCA	chr14:68508355-68508671(+)$1	316	187	201	13.4315
CUCCCUUCCCAGAG	chr1:227254173-227254529(-)$1	356	242	256	13.9561
UGCUUCCUGAUGUA	chr21:39475222-39475540(-)$1	318	80	94	13.4315
AGAUAUACCGUUCU	chr8:106480181-106480614(+)$1	433	188	202	13.9561
UCCUUCUGAUUGGA	chr11:107884070-107884371(+)$1	301	260	274	13.9561
cuuauuucagcaag	chr12:62735810-62736087(+)$1	277	114	128	12.3228
agauaucaccuucu	chr1:51851786-51852101(-)$1	315	3	17	13.9561
ACUUAGAUUUUGGU	chrX:73186611-73186855(+)$1	244	143	157	12.8270
guggcaccugacac	chr7:103774186-103774550(-)$1	364	227	241	12.8270
uugaacuccuccag	chr7:138225207-138225511(+)$1	304	165	179	13.4315
caccuuuuguagug	chr2:27011832-27012123(+)$1	291	258	272	13.4315
uccacccugucgga	chr4:80944757-80945046(-)$1	289	155	169	13.4315
UGCUGUCUCCUGCA	chr7:149186707-149187063(-)$1	356	34	48	13.9561
gucuuauuucugau	chr6:35344146-35344415(+)$1	269	37	51	13.9561
ucuucaauuccaga	chr4:103639439-103639779(-)$1	340	286	300	13.4315
gcugaaaguagggu	chr8:130533757-130534039(-)$1	282	129	143	13.9561
agucuuuuccaacu	chr19:15944388-15944645(+)$1	257	118	132	13.9561
GGAACCCUAACUCC	chr2:122239891-122240199(-)$1	308	248	262	12.8270
CUGAUGCCCUGCAG	chr7:43689413-43689750(-)$1	337	218	232	13.4315
gucaaaccuuagac	chr8:130530980-130531228(-)$1	248	20	34	13.9561
GGGACGAGGACCCC	chr19:54642121-54642394(+)$1	273	117	131	13.9561
GCAUAUCACACUGC	chrX:134678371-134678687(+)$1	316	54	68	13.4315
gccucucacaugug	chr4:48203295-48203651(-)$1	356	147	161	13.5094
AGGAUCCUUCACCU	chr1:32828517-32828803(-)$1	286	122	136	12.8270
aguuccuauuuacu	chr2:39345207-39345509(-)$1	302	276	290	12.8270
ugauuaauuuuuca	chr7:17903931-17904204(-)$1	273	190	204	13.4315
gagucacuuaccuu	chr15:25661940-25662260(-)$1	320	20	34	13.9561
GCCUUUAUCCUGGC	chr2:26484632-26485009(+)$1	377	199	213	13.9561
UAGUAAUAUUUCAA	chr7:141476835-141477098(+)$1	263	22	36	13.5323
gcucuuaccacagc	chr1:175984119-175984403(-)$1	284	151	165	12.3228
CACUGCUCCAUGUG	chr8:130475398-130475643(-)$1	245	10	24	13.9561
cagugccuauucug	chr11:6507083-6507304(+)$1	221	140	154	13.9561
CUUUGCUCCUUAAG	chr12:116614354-116614601(-)$1	247	114	128	12.8270
ugcuucauccugca	chr2:15529938-15530221(-)$1	283	93	107	13.4315
GUGUCAACAUUCUU	chr6:35338937-35339201(+)$1	264	166	180	13.0061
UUGUUCCUUUUCUU	chr11:107882914-107883218(+)$1	304	25	39	12.3404
AUAUGAUCUUCUAU	chr9:108472334-108472667(+)$1	333	299	313	12.8715
ggucccugcuaacc	chr4:120388814-120389084(+)$1	270	67	81	13.4315
CUAGCCUCCCAUAG	chr18:2667109-2667444(+)$1	335	217	231	13.9561
agcuuuuguuuguc	chr8:130532784-130533064(-)$1	280	161	175	12.9379
uccuuuagcucgga	chr1:95628792-95629122(+)$1	330	212	226	13.4315
gugucauuuuucgc	chr18:9581660-9581991(-)$1	331	150	164	13.9561
ccagaucuauaugg	chr12:80277110-80277435(-)$1	325	15	29	13.9561
AGUCUUCAACCAUU	chr1:35840721-35841025(+)$1	304	76	90	13.4315
GCACUCUCUCCUGC	chr2:168713072-168713388(-)$1	316	118	132	13.9561
ACAUGAUUUCCUGU	chr18:9571831-9572061(-)$1	230	192	206	12.3228
GAAAGCCCUCAUUC	chr6:10911755-10912060(+)$1	305	229	243	12.8715
augcuaguuuacuc	chr9:125916346-125916599(-)$1	253	87	101	12.3404
UGAUCUUGUUUUCA	chr1:94340251-94340570(-)$1	319	148	162	13.9561
ugaucuuacuuuca	chr20:45841841-45842154(-)$1	313	136	150	13.4315
ugccuguucccgua	chr7:135827729-135828025(+)$1	296	46	60	13.9561
gaucucaggacauc	chr17:27432397-27432710(-)$1	313	47	61	13.9561
AGAAACGUCCAUCU	chr7:143002961-143003256(+)$1	295	23	37	13.4315
GAGUUCUAUAUCCA	chr11:5509411-5509723(-)$1	312	8	22	12.7404
GCUCUGCCCCCAGC	chr22:20079926-20080197(+)$1	271	137	151	12.9248
uuguuuccauucag	chr7:155554582-155554845(+)$1	263	57	71	13.9561
UACCAAUACUUGUA	chr8:54884635-54884889(-)$1	254	65	79	13.9561
CUGUCCACUUUCAG	chr7:99113768-99114023(+)$1	255	69	83	12.8270
GCCCCUAACAAGUG	chr13:39587725-39588008(-)$1	283	159	173	13.5094
ACAUCCUUUCUUGU	chr7:106969558-106969913(-)$1	355	170	184	13.9561
GGCUCUGUGUUGCC	chr1:61099868-61100167(-)$1	299	204	218	13.9561
UGGAUCCAUUCCCA	chr7:139097891-139098295(+)$1	404	176	190	13.9561
ggaaccuugucucc	chr4:104113583-104113810(-)$1	227	142	156	13.4315
uagucauucUUCUA	chrX:110935244-110935590(+)$1	346	148	162	13.4315
ugauccuugcuuua	chr17:33979864-33980252(+)$1	388	361	375	12.8270

#DB
(((........)))	chr20:47902998-47903237(+)$1	1	53	67	13.4315
(((........)))	chr7:151742648-151742882(+)$1	1	29	43	13.4315
(((........)))	chr8:23391769-23392018(+)$1	1	208	222	13.9561
(((........)))	chrX:18314374-18314635(-)$1	1	40	54	13.9561
(((........)))	chr1:212224310-212224686(+)$1	1	286	300	13.9561
(((........)))	chr22:20927918-20928199(+)$1	1	26	40	12.8270
(((........)))	chr1:167965959-167966228(+)$1	1	101	115	13.9561
(((........)))	chr15:90745613-90745950(+)$1	1	72	86	12.8270
(((........).)	chr2:114694293-114694590(+)$1	1	128	142	13.5094
(((........)))	chr14:68508355-68508671(+)$1	1	187	201	13.4315
(((........)))	chr1:227254173-227254529(-)$1	1	242	256	13.9561
(((........)))	chr21:39475222-39475540(-)$1	1	80	94	13.4315
(((........)))	chr8:106480181-106480614(+)$1	1	188	202	13.9561
(((........)))	chr11:107884070-107884371(+)$1	1	260	274	13.9561
(((........)))	chr12:62735810-62736087(+)$1	1	114	128	12.3228
(((........)))	chr1:51851786-51852101(-)$1	1	3	17	13.9561
(((........)))	chrX:73186611-73186855(+)$1	1	143	157	12.8270
(((........)))	chr7:103774186-103774550(-)$1	1	227	241	12.8270
(((........)))	chr7:138225207-138225511(+)$1	1	165	179	13.4315
(((........)))	chr2:27011832-27012123(+)$1	1	258	272	13.4315
(((........)))	chr4:80944757-80945046(-)$1	1	155	169	13.4315
(((........)))	chr7:149186707-149187063(-)$1	1	34	48	13.9561
(((........)))	chr6:35344146-35344415(+)$1	1	37	51	13.9561
(((........)))	chr4:103639439-103639779(-)$1	1	286	300	13.4315
(((........)))	chr8:130533757-130534039(-)$1	1	129	143	13.9561
(((........)))	chr19:15944388-15944645(+)$1	1	118	132	13.9561
(((........)))	chr2:122239891-122240199(-)$1	1	248	262	12.8270
(((........)))	chr7:43689413-43689750(-)$1	1	218	232	13.4315
(((........)))	chr8:130530980-130531228(-)$1	1	20	34	13.9561
(((........)))	chr19:54642121-54642394(+)$1	1	117	131	13.9561
(((........)))	chrX:134678371-134678687(+)$1	1	54	68	13.4315
(((........).)	chr4:48203295-48203651(-)$1	1	147	161	13.5094
(((........)))	chr1:32828517-32828803(-)$1	1	122	136	12.8270
(((........)))	chr2:39345207-39345509(-)$1	1	276	290	12.8270
(((........)))	chr7:17903931-17904204(-)$1	1	190	204	13.4315
(((........)))	chr15:25661940-25662260(-)$1	1	20	34	13.9561
(((........)))	chr2:26484632-26485009(+)$1	1	199	213	13.9561
(.(........)))	chr7:141476835-141477098(+)$1	1	22	36	13.5323
(((........)))	chr1:175984119-175984403(-)$1	1	151	165	12.3228
(((........)))	chr8:130475398-130475643(-)$1	1	10	24	13.9561
(((........)))	chr11:6507083-6507304(+)$1	1	140	154	13.9561
(((........)))	chr12:116614354-116614601(-)$1	1	114	128	12.8270
(((........)))	chr2:15529938-15530221(-)$1	1	93	107	13.4315
(.(........)))	chr6:35338937-35339201(+)$1	1	166	180	13.0061
..(........)..	chr11:107882914-107883218(+)$1	1	25	39	12.3404
(((........)))	chr9:108472334-108472667(+)$1	1	299	313	12.8715
(((........)))	chr4:120388814-120389084(+)$1	1	67	81	13.4315
(((........)))	chr18:2667109-2667444(+)$1	1	217	231	13.9561
(((........).)	chr8:130532784-130533064(-)$1	1	161	175	12.9379
(((........)))	chr1:95628792-95629122(+)$1	1	212	226	13.4315
(((........)))	chr18:9581660-9581991(-)$1	1	150	164	13.9561
(((........)))	chr12:80277110-80277435(-)$1	1	15	29	13.9561
(((........)))	chr1:35840721-35841025(+)$1	1	76	90	13.4315
(((........)))	chr2:168713072-168713388(-)$1	1	118	132	13.9561
(((........)))	chr18:9571831-9572061(-)$1	1	192	206	12.3228
(((........)))	chr6:10911755-10912060(+)$1	1	229	243	12.8715
..(........)..	chr9:125916346-125916599(-)$1	1	87	101	12.3404
(((........)))	chr1:94340251-94340570(-)$1	1	148	162	13.9561
(((........)))	chr20:45841841-45842154(-)$1	1	136	150	13.4315
(((........)))	chr7:135827729-135828025(+)$1	1	46	60	13.9561
(((........)))	chr17:27432397-27432710(-)$1	1	47	61	13.9561
(((........)))	chr7:143002961-143003256(+)$1	1	23	37	13.4315
(.(........)))	chr11:5509411-5509723(-)$1	1	8	22	12.7404
(((........)))	chr22:20079926-20080197(+)$1	1	137	151	12.9248
(((........)))	chr7:155554582-155554845(+)$1	1	57	71	13.9561
(((........)))	chr8:54884635-54884889(-)$1	1	65	79	13.9561
(((........)))	chr7:99113768-99114023(+)$1	1	69	83	12.8270
(((........).)	chr13:39587725-39588008(-)$1	1	159	173	13.5094
(((........)))	chr7:106969558-106969913(-)$1	1	170	184	13.9561
(((........)))	chr1:61099868-61100167(-)$1	1	204	218	13.9561
(((........)))	chr7:139097891-139098295(+)$1	1	176	190	13.9561
(((........)))	chr4:104113583-104113810(-)$1	1	142	156	13.4315
(((........)))	chrX:110935244-110935590(+)$1	1	148	162	13.4315
(((........)))	chr17:33979864-33980252(+)$1	1	361	375	12.8270

#PSSM
c : 0.45	d : 0.25	e : 0.14	f : 0.05	g : 0.04	! : 0.02	= : 0.01	
c : 0.44	d : 0.25	e : 0.14	f : 0.04	[ : 0.04	! : 0.02	g : 0.02	= : 0.01	
c : 0.40	d : 0.25	e : 0.13	a : 0.12	f : 0.04	g : 0.02	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.40	d : 0.25	e : 0.13	a : 0.12	f : 0.04	g : 0.02	= : 0.01	
c : 0.41	d : 0.25	e : 0.13	] : 0.05	f : 0.05	g : 0.04	2 : 0.02	= : 0.01	
c : 0.45	d : 0.25	e : 0.14	f : 0.05	g : 0.04	2 : 0.02	= : 0.01	

#score	995.2179924505574
#seq	74
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_CDS_m1_run1.txt

#BEAR
ccc[dddd!!cccrrrrrrrrrccc333dddd]ccc:	chr18:56998159-56998430(-)$1	271	2	39	15.3226
gg[eeeeevvvvvvvvvvvvveeeee333gggggggG	chr4:120221408-120221636(-)$1	228	5	42	21.3719
c[ggggggg"""ddddoooooodddd333ggggggg]	chr6:24650832-24651120(-)$1	288	10	47	15.6558
hhhhhhhh####bbcccmmmmccc]bb22hhhhhhhh	chr20:31025023-31025331(+)$1	308	13	50	14.7274
hhhhhhhhxxxxxxxxxxxxxxxhhhhhhhhiiiiii	chr6:166739519-166739756(-)$1	237	112	149	19.0479
ggggggg!!bb!!bboooooobb22bb22ggggggg]	chr5:133292406-133292656(-)$1	250	139	176	15.6552
hh[eeeeewwwwwwwwwwwwwweeeee22hhhhhhhh	chr4:57897000-57897294(+)$1	294	232	269	22.7011
gggggggcccwwwwwwwwwwwwwwccc]ggggggg]b	chr12:26571969-26572245(-)$1	276	179	216	21.1560
ggg"""dddd!!bbtttttttttttbb22dddd]ggg	chr14:39868454-39868833(-)$1	379	293	330	17.2904

#otherMatches

#Seq PSSM
AGUCCUGUUUCUUUCCAAAGUUAAGCGUAUAGAACUU	chr18:56998159-56998430(-)$1	271	2	39	15.3226
UAGCGAGGGAGGGAGGCAGAACUUCGAUGUGAGGCCU	chr4:120221408-120221636(-)$1	228	5	42	21.3719
GAAGUUUGGACCUUCUUGGAUUAGAAAAACUGGACUG	chr6:24650832-24651120(-)$1	288	10	47	15.6558
UGCAGCCUGAAAGCCAUGAUCAUGUGCCAAGGCUGCG	chr20:31025023-31025331(+)$1	308	13	50	14.7274
AUUUACCCUGUGUGCUGCUCUUUGGGUAAGUUAUGUC	chr6:166739519-166739756(-)$1	237	112	149	19.0479
UAUUUGCUUGACUUUUUAUAUGAUAUUGUGCAAAUGU	chr5:133292406-133292656(-)$1	250	139	176	15.6552
UAUGUACUGUGUUGUGAUAAAAAGUAUUUUAUUUGUU	chr4:57897000-57897294(+)$1	294	232	269	22.7011
GGAUAUGGCCUUUCUCUAUCACGUGGCGUAUGUCCUG	chr12:26571969-26572245(-)$1	276	179	216	21.1560
UCAAAGUGACAAUGUAUAGGGCUUUCACGGUUAAUGG	chr14:39868454-39868833(-)$1	379	293	330	17.2904

#DB
(((.((((..(((.........)))...)))).))).	chr18:56998159-56998430(-)$1	1	2	39	15.3226
((.(((((.............)))))...)))))))(	chr4:120221408-120221636(-)$1	1	5	42	21.3719
(.(((((((...((((......))))...))))))).	chr6:24650832-24651120(-)$1	1	10	47	15.6558
((((((((....(((((....))).))..))))))))	chr20:31025023-31025331(+)$1	1	13	50	14.7274
((((((((...............))))))))((((((	chr6:166739519-166739756(-)$1	1	112	149	19.0479
(((((((..((..((......))..))..))))))).	chr5:133292406-133292656(-)$1	1	139	176	15.6552
((.(((((..............)))))..))))))))	chr4:57897000-57897294(+)$1	1	232	269	22.7011
((((((((((..............))).))))))).)	chr12:26571969-26572245(-)$1	1	179	216	21.1560
(((...((((..((...........))..)))).)))	chr14:39868454-39868833(-)$1	1	293	330	17.2904

#PSSM
g : 0.44	h : 0.33	c : 0.22	
g : 0.44	h : 0.33	c : 0.11	[ : 0.11	
g : 0.44	[ : 0.22	h : 0.22	c : 0.11	
g : 0.33	e : 0.22	h : 0.22	[ : 0.11	" : 0.11	
g : 0.33	e : 0.22	h : 0.22	d : 0.11	" : 0.11	
g : 0.33	e : 0.22	h : 0.22	d : 0.11	" : 0.11	
g : 0.33	d : 0.22	e : 0.22	h : 0.22	
d : 0.22	e : 0.22	h : 0.22	g : 0.11	! : 0.11	c : 0.11	
! : 0.22	v : 0.11	g : 0.11	# : 0.11	x : 0.11	w : 0.11	c : 0.11	d : 0.11	
! : 0.11	v : 0.11	" : 0.11	# : 0.11	x : 0.11	b : 0.11	w : 0.11	c : 0.11	d : 0.11	
w : 0.22	c : 0.11	v : 0.11	" : 0.11	# : 0.11	x : 0.11	b : 0.11	! : 0.11	
! : 0.22	w : 0.22	c : 0.11	v : 0.11	" : 0.11	# : 0.11	x : 0.11	
b : 0.22	w : 0.22	c : 0.11	v : 0.11	d : 0.11	x : 0.11	! : 0.11	
b : 0.33	w : 0.22	r : 0.11	v : 0.11	d : 0.11	x : 0.11	
w : 0.22	r : 0.11	v : 0.11	d : 0.11	c : 0.11	x : 0.11	b : 0.11	t : 0.11	
w : 0.22	r : 0.11	v : 0.11	d : 0.11	c : 0.11	x : 0.11	o : 0.11	t : 0.11	
o : 0.22	w : 0.22	r : 0.11	v : 0.11	c : 0.11	x : 0.11	t : 0.11	
o : 0.22	w : 0.22	r : 0.11	v : 0.11	m : 0.11	x : 0.11	t : 0.11	
o : 0.22	w : 0.22	r : 0.11	v : 0.11	m : 0.11	x : 0.11	t : 0.11	
o : 0.22	w : 0.22	r : 0.11	v : 0.11	m : 0.11	x : 0.11	t : 0.11	
o : 0.22	w : 0.22	r : 0.11	v : 0.11	m : 0.11	x : 0.11	t : 0.11	
w : 0.22	r : 0.11	e : 0.11	o : 0.11	c : 0.11	x : 0.11	b : 0.11	t : 0.11	
c : 0.22	e : 0.22	d : 0.11	x : 0.11	b : 0.11	w : 0.11	t : 0.11	
c : 0.22	e : 0.22	d : 0.11	h : 0.11	2 : 0.11	w : 0.11	t : 0.11	
c : 0.22	e : 0.22	d : 0.11	] : 0.11	h : 0.11	2 : 0.11	t : 0.11	
b : 0.33	e : 0.22	3 : 0.11	d : 0.11	h : 0.11	c : 0.11	
3 : 0.33	b : 0.33	h : 0.11	e : 0.11	c : 0.11	
2 : 0.44	3 : 0.33	h : 0.11	] : 0.11	
2 : 0.44	3 : 0.22	d : 0.11	h : 0.11	g : 0.11	
g : 0.44	h : 0.33	d : 0.22	
g : 0.44	h : 0.33	d : 0.22	
g : 0.44	d : 0.22	h : 0.22	i : 0.11	
g : 0.44	h : 0.22	] : 0.11	i : 0.11	d : 0.11	
g : 0.44	h : 0.22	c : 0.11	i : 0.11	] : 0.11	
g : 0.55	h : 0.22	c : 0.11	i : 0.11	
g : 0.44	h : 0.22	c : 0.11	i : 0.11	] : 0.11	
] : 0.22	h : 0.22	: : 0.11	G : 0.11	i : 0.11	b : 0.11	g : 0.11	

#score	162.92870203353334
#seq	9
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_CDS_m2_run1.txt

#BEAR
ggggggg!!ccc[cccooooooccc]cccgggggggFFFF	chr7:50444164-50444418(+)$1	254	1	41	12.8548
iiiiii$$$$$a[cccqqqqqqqqccc]a4444iiiiiii	chr11:47380057-47380360(-)$1	303	185	225	11.0219
##ffffff!!ddddrrrrrrrrrdddd22ffffff]ffff	chr12:50410311-50410598(-)$1	287	222	262	10.4070
cceeeee[a"""ddddoooooodddd4444a]eeeee22c	chr15:72509677-72509889(-)$1	212	69	109	14.0690
============[ddddnnnnndddd333===========	chr3:183898841-183899107(+)$1	266	222	262	17.5238
bb"""ccc!!gggggggnnnnnggggggg]ccc333bbdd	chr7:102760128-102760441(-)$1	313	55	95	12.9727
cc####bb!!gggggggooooooggggggg22bb333ccc	chr9:100777584-100777802(+)$1	218	34	74	12.8474
dddeeeee!!gggggggnnnnnggggggg]eeeeeeeeee	chr9:100774602-100774805(+)$1	203	81	121	11.6731
!!eeeee!!ffffff[annnnna]ffffffeeeee]ccc:	chr6:36483134-36483416(-)$1	282	30	70	10.5591
[bb!!ccc!!ggggggglllggggggg22ccc22bb]fff	chr4:142150718-142150952(+)$1	234	141	181	11.6426
dddeeeee[a"""ddddoooooodddd4444a]eeeeeII	chr15:72509647-72509877(-)$1	230	56	96	11.3138
ggg!!a####ddddqqqqqqqqdddd333a22ggggggg2	chr3:195792286-195792497(-)$1	211	44	84	11.1415
gccc[bb[bb!!eeeeeooooooeeeee22bb333bbccc	chr1:185267181-185267450(-)$1	269	132	172	12.0848
!dddd!!ccc"""ddddnnnnndddd22ccc333dddd22	chr10:43088913-43089166(-)$1	253	147	187	14.4051
gggggg[bb[bb[ddddccclllccc333dddd]bb]bb]	chr8:48701370-48701642(-)$1	272	7	47	10.8015
ccc!!bb$$$$$ddddoooooodddd4444bb22ccc]cc	chr7:99077330-99077598(+)$1	268	136	176	13.8914
hhhhhbb[bb"""ddddnnnnndddd22bb]bb>>>>>>>	chr19:36727795-36728048(+)$1	253	25	65	11.2428
!!ccc!!a[ccc[eeeeellleeeeeccc]a22ccc4444	chr10:120802049-120802341(-)$1	292	161	201	12.7642
ggiiiiiiiiibb"""ccclllccc333bb]iiiiiiiii	chr10:70099095-70099352(+)$1	257	206	246	12.9891
iii!!ccc####ddddoooooodddd333ccc>>>>>>>>	chr22:24439214-24439499(+)$1	285	207	247	14.7264
:ffffffiiiiiiiiiooooooiiiiiiiii333ffffff	chr9:100777553-100777784(+)$1	231	9	49	12.9729
ddddcccddddbb[cccnnnnnccc]bb]dddd]ccc]dd	chr1:205683365-205683622(-)$1	257	74	114	9.7422
iiiiiiiii[bb!!a[ccclllccc]a22bb22iiiiiii	chr20:62562304-62562574(+)$1	270	86	126	13.2427
iiiiiiiiibb[eeeeemmmmeeeee4444bb22iiiiii	chr17:17942628-17942926(+)$1	298	49	89	11.7281
ggggggg!!eeeee!!annnnna22eeeeeggggggg22d	chr17:76117682-76117980(-)$1	298	39	79	11.9573
a[ffffff[ccceeeeennnnneeeee]cccffffff]a:	chr1:76260182-76260467(+)$1	285	60	100	11.4789
cciiiiiiiii"""cccnnnnnccc55555iiiiiiiii:	chr10:33200861-33201105(-)$1	244	124	164	11.3273
c[a!!ffffff!!bbrrrrrrrrrbb333ffffff4444a	chr7:6074949-6075277(-)$1	328	66	106	11.4662
[ccc[==========!!bblllbb]==========]ccc]	chr11:32608569-32608791(+)$1	222	3	43	13.1181
a!!dddd"""bb[eeeeemmmmeeeee]bb333dddd22a	chr20:57473776-57474101(+)$1	325	195	235	10.4181
ee[cccffffff[ddddooooooddddffffff333ccce	chr5:132412454-132412682(+)$1	228	59	99	12.5111
g[bb$$$$$ccc[eeeeellleeeee]ccc4444bbgggg	chr10:70098289-70098546(+)$1	257	192	232	11.4049
####aeeeee"""ddddnnnnndddd22eeeee]a333ee	chr6:160484297-160484558(+)$1	261	65	105	13.7796
[=========="""cccnnnnnccc55555==========	chr10:33200766-33201037(-)$1	271	56	96	13.3083
[eeeee"""iiiiiiiiillliiiiiiiii4444eeeee]	chr8:101725244-101725477(-)$1	233	100	140	13.1718
eeeee[eeeeea!!ddddmmmmdddd22a]eeeee]eeee	chr4:71889200-71889478(+)$1	278	78	118	10.4016
f####ggggggg[bboooooobb]ggggggg22ffffff3	chr10:51585045-51585303(+)$1	258	58	98	11.5167
ddd[a[ccc[bb[ddddooooooddddbb]ccc]a]dddd	chr15:28520018-28520290(-)$1	272	221	261	12.3748
cffffffggggggg!!annnnna22ggggggg333fffff	chr7:97493511-97493810(-)$1	299	123	163	12.6977
ggggggg!!ccc[ddddnnnnndddd]ccc333ggggggg	chrX:100297155-100297459(-)$1	304	0	40	15.7418
ggggg[bb[ccc"""cccmmmmccc22ccc]bb333gggg	chr8:141745340-141745657(-)$1	317	145	185	11.8330
[eeeee"""iiiiiiiiillliiiiiiiii4444eeeee]	chr8:101725235-101725444(-)$1	209	67	107	13.1718
============[bbffffff####ccc==========cc	chr17:55187229-55187519(+)$1	290	86	126	9.7786
==============qqqqqqqq==============dddd	chr3:142094649-142094939(-)$1	290	100	140	11.4814
:ffffffiiiiiiiiiooooooiiiiiiiii333ffffff	chr9:100777545-100777748(+)$1	203	17	57	12.9729
"""ddddxxxxxxxxxxxxxxxdddd333ggggggg]ccc	chr3:47752071-47752379(-)$1	308	142	182	10.5182
c[a!!ffffff!!bbrrrrrrrrrbb333ffffff4444a	chr7:6075104-6075364(-)$1	260	153	193	11.4662
[ddddggggggg!!cccooooooccc]ggggggg4444dd	chr1:185267250-185267513(-)$1	263	104	144	13.6924
cccccc!!a[ggggggglllggggggg]a]ccc22ccc33	chr11:64846484-64846736(-)$1	252	113	153	12.1370
ggggggccc####ddddnnnnndddd22ccc]gggggggC	chr2:152346402-152346705(+)$1	303	233	273	14.2874

#otherMatches

#Seq PSSM
GUGUUGUUUUGUUGAGUUUUUUUUUUGCAAUGACACUGAG	chr7:50444164-50444418(+)$1	254	1	41	12.8548
ggugugugugucucucugugccaugaguguguguacaucu	chr11:47380057-47380360(-)$1	303	185	225	11.0219
AGAUUUCAAAUUUGGGAUUUUUACAAAGCUGAAGUAUUUU	chr12:50410311-50410598(-)$1	287	222	262	10.4070
AGACGUUGAAGGAGAUGAUUAAGUCUGGAAUGAAUGUGGC	chr15:72509677-72509889(-)$1	212	69	109	14.0690
AGUGGGGUCUAGUGAACCACAAGUUUCUUCUGGAUUUCAU	chr3:183898841-183899107(+)$1	266	222	262	17.5238
CAAUUCUGUCAUUGCUUUGAAUGAGCGAUUUGGUAAUGAG	chr7:102760128-102760441(-)$1	313	55	95	12.9727
CUAAAGUCAAUUUUUGUUACUGUACagaggaggaagaagg	chr9:100777584-100777802(+)$1	218	34	74	12.8474
GCUGUUUGCUAUUCUUUAGGAAGAAGAAUUUGGACUUGAU	chr9:100774602-100774805(+)$1	203	81	121	11.6731
UUAUUUUGGCAGAUAGGGAAGACAUAUCUGAAAAUUGGUA	chr6:36483134-36483416(-)$1	282	30	70	10.5591
UUAGACACAAGUAAUGAGCUUUGUUAUAGGUGAAUGUUGA	chr4:142150718-142150952(+)$1	234	141	181	11.6426
GAGACGUUGAAGGAGAUGAUUAAGUCUGGAAUGAAUGUGG	chr15:72509647-72509877(-)$1	230	56	96	11.3138
UCCCUCUGACUGGAAAACAGACUCUACAUGUAGGAUGGUA	chr3:195792286-195792497(-)$1	211	44	84	11.1415
CUUCACCAAGGAGCAAUGCUGGGAUUGCAACUGUAGGGAA	chr1:185267181-185267450(-)$1	269	132	172	12.0848
AGAGAACUCACACAGGUGAGAAACCUUUUGAAUGUCUUGA	chr10:43088913-43089166(-)$1	253	147	187	14.4051
UCUUACUUUUUUUUUCCCCUGACAGGAUUGGAGCAAUGAU	chr8:48701370-48701642(-)$1	272	7	47	10.8015
cuuagucccuuaucugcaauuccagaaucagaaaaagcgg	chr7:99077330-99077598(+)$1	268	136	176	13.8914
AAUGUGGAACAGCCUUUGGCCAGAAGAAGUACCUCAUAAA	chr19:36727795-36728048(+)$1	253	25	65	11.2428
GACCAGACGAUGAUCGGGUUCCCCGGCGUGGCAUGGAUGA	chr10:120802049-120802341(-)$1	292	161	201	12.7642
ACAUUGCUAAUGUGAGUAAUUUUUAAUAACUAUUAGUGGU	chr10:70099095-70099352(+)$1	257	206	246	12.9891
CCUGAGGCUCAUCCGGAUCCCCCUGGCUCGCCAUGCUUUU	chr22:24439214-24439499(+)$1	285	207	247	14.7264
CUUUGUUGUUGUUGCCUCCAUUGGCAAUAAUCUAAGCAAA	chr9:100777553-100777784(+)$1	231	9	49	12.9729
AUGCCAAUGGAGUGACUGAACUGGUGACAUCUGUUUGAGC	chr1:205683365-205683622(-)$1	257	74	114	9.7422
AGGGCCCGUGUGUGUGUGUGGGGCAGAGCCAGAAUGGGCC	chr20:62562304-62562574(+)$1	270	86	126	13.2427
UCCCGCCCCCCAGGCUCGCCUGAGCCAAUCGGAAGGGGCG	chr17:17942628-17942926(+)$1	298	49	89	11.7281
AGGGCAGGUGGGGCAUGGGGAACUGGCCCUCUGUCCUGGU	chr17:76117682-76117980(-)$1	298	39	79	11.9573
GGAGAAGAACAGAUUAAACCUGUUAAUCCUGUCUUUUGCA	chr1:76260182-76260467(+)$1	285	60	100	11.4789
CUUACUGCAGGAAAGAAAACAGUUCAGAAAUCUGCAGUAA	chr10:33200861-33201105(-)$1	244	124	164	11.3273
UGCGGAGACAUGUGAUGCUGCUAUUCUGAAUGUCUGUCAG	chr7:6074949-6075277(-)$1	328	66	106	11.4662
GCUUAUCUGAAAUCUAAAGGAGCUGAGAUUUCAGAAGAGA	chr11:32608569-32608791(+)$1	222	3	43	13.1181
GAGCUUUCAAUCUCUCUUUAAAAGGGGCGGCGAAGAGGAC	chr20:57473776-57474101(+)$1	325	195	235	10.4181
AGUGCAAAUGCUUCAGAUCUCCCUUUGAGCAUUGAAUGUU	chr5:132412454-132412682(+)$1	228	59	99	12.5111
UUCUUAAUGUUCCUGACACUUUGUCAAGAAAUACAGAAAU	chr10:70098289-70098546(+)$1	257	192	232	11.4049
ccggccAUUUGUAAAGCUUUUUGCUUGAAAAUGUGAAUGC	chr6:160484297-160484558(+)$1	261	65	105	13.7796
CUUACUGCAGGAAAGAAAACAGUUCAGAAAUCUGCAGUAA	chr10:33200766-33201037(-)$1	271	56	96	13.3083
GAAAGUGGAAAAUCCAAAGGAUUUGGAUUUGUAAGCUUUG	chr8:101725244-101725477(-)$1	233	100	140	13.1718
UAUUUUUGCAUCUAAUUUGUAUGAAUCUGAAUGCAUGAAU	chr4:71889200-71889478(+)$1	278	78	118	10.4016
GGAGGUGUGCAGAGCCAAUGAGCCCUGCACAAGCUUUGCA	chr10:51585045-51585303(+)$1	258	58	98	11.5167
CGCAGGGCCUGGCGAUCAGGUACGGUCCCUGGUGUGGCGC	chr15:28520018-28520290(-)$1	272	221	261	12.3748
UUUUACUGGAUACUGCCAAUAAGAAAGUGUUCCUGGGUAG	chr7:97493511-97493810(-)$1	299	123	163	12.6977
ACAGUAAUUCAGUUCUGCUCAACAGGCUUGCUUUUACUGU	chrX:100297155-100297459(-)$1	304	0	40	15.7418
UUCAAGGAGUGAAGAACAAUGAUGUAAUCGGUCGAAUUGA	chr8:141745340-141745657(-)$1	317	145	185	11.8330
GAAAGUGGAAAAUCCAAAGGAUUUGGAUUUGUAAGCUUUG	chr8:101725235-101725444(-)$1	209	67	107	13.1718
AAGUUCUUGGUUACUGGCUGCUCUGAGUGGGGUCUGUGUG	chr17:55187229-55187519(+)$1	290	86	126	9.7786
gugugugugugugugugugugugcacgugugcgcaugugu	chr3:142094649-142094939(-)$1	290	100	140	11.4814
CUUUGUUGUUGUUGCCUCCAUUGGCAAUAAUCUAAGCAAA	chr9:100777545-100777748(+)$1	203	17	57	12.9729
AUGAGGUGGAUGAAAAUAGGAAGCCUGUGAGUUUUCGUCA	chr3:47752071-47752379(-)$1	308	142	182	10.5182
UGCGGAGACAUGUGAUGCUGCUAUUCUGAAUGUCUGUCAG	chr7:6075104-6075364(-)$1	260	153	193	11.4662
GUAUGUGGUGGCUUUGAUGGUUCUCAUGCCAUCAGUUGUG	chr1:185267250-185267513(-)$1	263	104	144	13.6924
GCCGAGUUUGAAGCUGCUGAGCAGUUUGAUCUCCUGGUUG	chr11:64846484-64846736(-)$1	252	113	153	12.1370
GGUAUCCUUUAAUCUGUGUUUAGCAGCUGAGUGAUGUCUU	chr2:152346402-152346705(+)$1	303	233	273	14.2874

#DB
(((((((..(((.(((......))).))))))))))((((	chr7:50444164-50444418(+)$1	1	1	41	12.8548
((((((.....(.(((........))).)....)))))))	chr11:47380057-47380360(-)$1	1	185	225	11.0219
..((((((..((((.........))))..)))))).))))	chr12:50410311-50410598(-)$1	1	222	262	10.4070
(((((((.(...((((......))))....).)))))..)	chr15:72509677-72509889(-)$1	1	69	109	14.0690
((((((((((((.((((.....))))...)))))))))))	chr3:183898841-183899107(+)$1	1	222	262	17.5238
((...(((..(((((((.....))))))).)))...))))	chr7:102760128-102760441(-)$1	1	55	95	12.9727
((....((..(((((((......)))))))..))...)))	chr9:100777584-100777802(+)$1	1	34	74	12.8474
)))(((((..(((((((.....))))))).)))))(((((	chr9:100774602-100774805(+)$1	1	81	121	11.6731
..(((((..((((((.(.....).))))))))))).))).	chr6:36483134-36483416(-)$1	1	30	70	10.5591
.((..(((..(((((((...)))))))..)))..)).)))	chr4:142150718-142150952(+)$1	1	141	181	11.6426
)))(((((.(...((((......))))....).)))))((	chr15:72509647-72509877(-)$1	1	56	96	11.3138
(((..(....((((........))))...)..))))))).	chr3:195792286-195792497(-)$1	1	44	84	11.1415
)(((.((.((..(((((......)))))..))...)))))	chr1:185267181-185267450(-)$1	1	132	172	12.0848
.((((..(((...((((.....))))..)))...))))..	chr10:43088913-43089166(-)$1	1	147	187	14.4051
((((((.((.((.(((((((...)))...)))).)).)).	chr8:48701370-48701642(-)$1	1	7	47	10.8015
(((..((.....((((......))))....))..))).))	chr7:99077330-99077598(+)$1	1	136	176	13.8914
(((((((.((...((((.....))))..)).)).......	chr19:36727795-36728048(+)$1	1	25	65	11.2428
..(((..(.(((.(((((...)))))))).)..)))....	chr10:120802049-120802341(-)$1	1	161	201	12.7642
))(((((((((((...(((...)))...)).)))))))))	chr10:70099095-70099352(+)$1	1	206	246	12.9891
(((..(((....((((......))))...)))........	chr22:24439214-24439499(+)$1	1	207	247	14.7264
.(((((((((((((((......)))))))))...))))))	chr9:100777553-100777784(+)$1	1	9	49	12.9729
(((((((((((((.(((.....))).)).)))).))).))	chr1:205683365-205683622(-)$1	1	74	114	9.7422
(((((((((.((..(.(((...))).)..))..)))))))	chr20:62562304-62562574(+)$1	1	86	126	13.2427
(((((((((((.(((((....)))))....))..))))))	chr17:17942628-17942926(+)$1	1	49	89	11.7281
(((((((..(((((..(.....)..))))))))))))..)	chr17:76117682-76117980(-)$1	1	39	79	11.9573
(.((((((.((((((((.....))))).))))))))).).	chr1:76260182-76260467(+)$1	1	60	100	11.4789
))(((((((((...(((.....))).....))))))))).	chr10:33200861-33201105(-)$1	1	124	164	11.3273
(.(..((((((..((.........))...))))))....)	chr7:6074949-6075277(-)$1	1	66	106	11.4662
.(((.((((((((((..((...)).)))))))))).))).	chr11:32608569-32608791(+)$1	1	3	43	13.1181
(..((((...((.(((((....))))).))...))))..)	chr20:57473776-57474101(+)$1	1	195	235	10.4181
((.(((((((((.((((......))))))))))...))))	chr5:132412454-132412682(+)$1	1	59	99	12.5111
(.((.....(((.(((((...))))).)))....))))))	chr10:70098289-70098546(+)$1	1	192	232	11.4049
....((((((...((((.....))))..))))).)...))	chr6:160484297-160484558(+)$1	1	65	105	13.7796
.((((((((((...(((.....))).....))))))))))	chr10:33200766-33201037(-)$1	1	56	96	13.3083
.(((((...(((((((((...)))))))))....))))).	chr8:101725244-101725477(-)$1	1	100	140	13.1718
(((((.((((((..((((....))))..).))))).))))	chr4:71889200-71889478(+)$1	1	78	118	10.4016
(....(((((((.((......)).)))))))..)))))).	chr10:51585045-51585303(+)$1	1	58	98	11.5167
(((.(.(((.((.((((......)))))).))).).))))	chr15:28520018-28520290(-)$1	1	221	261	12.3748
((((((((((((((..(.....)..)))))))...)))))	chr7:97493511-97493810(-)$1	1	123	163	12.6977
(((((((..(((.((((.....)))).)))...)))))))	chrX:100297155-100297459(-)$1	1	0	40	15.7418
(((((.((.(((...(((....)))..))).))...))))	chr8:141745340-141745657(-)$1	1	145	185	11.8330
.(((((...(((((((((...)))))))))....))))).	chr8:101725235-101725444(-)$1	1	67	107	13.1718
((((((((((((.((((((((....(((((((((((((((	chr17:55187229-55187519(+)$1	1	86	126	9.7786
((((((((((((((........))))))))))))))))))	chr3:142094649-142094939(-)$1	1	100	140	11.4814
.(((((((((((((((......)))))))))...))))))	chr9:100777545-100777748(+)$1	1	17	57	12.9729
...((((...............))))...))))))).)))	chr3:47752071-47752379(-)$1	1	142	182	10.5182
(.(..((((((..((.........))...))))))....)	chr7:6075104-6075364(-)$1	1	153	193	11.4662
.(((((((((((..(((......))).)))))))....))	chr1:185267250-185267513(-)$1	1	104	144	13.6924
((((((..(.(((((((...))))))).).)))..)))..	chr11:64846484-64846736(-)$1	1	113	153	12.1370
(((((((((....((((.....))))..))).))))))))	chr2:152346402-152346705(+)$1	1	233	273	14.2874

#PSSM
g : 0.19	c : 0.16	[ : 0.12	i : 0.08	d : 0.08	= : 0.06	! : 0.06	# : 0.04	: : 0.04	a : 0.04	e : 0.04	b : 0.02	h : 0.02	f : 0.02	" : 0.02	
g : 0.16	c : 0.14	d : 0.12	i : 0.08	= : 0.08	[ : 0.08	e : 0.08	# : 0.06	! : 0.06	f : 0.06	b : 0.04	h : 0.02	" : 0.02	
g : 0.14	i : 0.12	d : 0.12	f : 0.10	e : 0.10	c : 0.10	= : 0.08	# : 0.06	" : 0.04	b : 0.04	a : 0.04	h : 0.02	! : 0.02	[ : 0.02	
e : 0.14	g : 0.12	! : 0.12	i : 0.10	f : 0.10	c : 0.10	d : 0.10	= : 0.08	# : 0.06	" : 0.02	h : 0.02	b : 0.02	[ : 0.02	
e : 0.14	g : 0.12	! : 0.12	i : 0.10	f : 0.10	= : 0.08	d : 0.08	c : 0.08	# : 0.04	[ : 0.04	a : 0.04	" : 0.02	h : 0.02	$ : 0.02	
g : 0.14	f : 0.14	e : 0.14	c : 0.12	i : 0.10	= : 0.10	b : 0.06	[ : 0.06	! : 0.04	d : 0.04	# : 0.02	a : 0.02	$ : 0.02	
f : 0.16	e : 0.12	c : 0.12	g : 0.10	= : 0.10	b : 0.10	i : 0.08	! : 0.06	$ : 0.04	d : 0.04	" : 0.04	# : 0.02	[ : 0.02	
c : 0.12	i : 0.12	! : 0.10	f : 0.10	= : 0.10	e : 0.08	$ : 0.06	[ : 0.06	b : 0.06	" : 0.06	g : 0.06	# : 0.02	a : 0.02	d : 0.02	x : 0.02	
! : 0.18	i : 0.12	= : 0.10	[ : 0.08	$ : 0.06	b : 0.06	c : 0.06	f : 0.06	" : 0.06	g : 0.06	a : 0.04	# : 0.04	e : 0.04	d : 0.02	x : 0.02	
c : 0.14	i : 0.12	! : 0.10	= : 0.10	f : 0.08	[ : 0.08	# : 0.06	b : 0.06	e : 0.06	g : 0.06	$ : 0.04	" : 0.04	a : 0.02	d : 0.02	x : 0.02	
g : 0.16	c : 0.12	i : 0.12	" : 0.10	= : 0.10	b : 0.10	f : 0.08	d : 0.06	$ : 0.04	# : 0.04	e : 0.04	! : 0.02	x : 0.02	
g : 0.16	" : 0.14	c : 0.12	b : 0.12	= : 0.08	i : 0.08	! : 0.06	a : 0.04	d : 0.04	f : 0.04	# : 0.04	$ : 0.02	[ : 0.02	e : 0.02	x : 0.02	
[ : 0.23	" : 0.14	g : 0.12	d : 0.10	! : 0.10	e : 0.08	i : 0.08	b : 0.04	= : 0.04	f : 0.02	x : 0.02	# : 0.02	
d : 0.30	e : 0.14	g : 0.12	" : 0.08	i : 0.08	b : 0.08	! : 0.06	c : 0.04	= : 0.04	f : 0.02	[ : 0.02	x : 0.02	
d : 0.27	c : 0.12	e : 0.12	g : 0.10	i : 0.08	b : 0.08	q : 0.04	" : 0.04	! : 0.04	r : 0.02	f : 0.02	a : 0.02	= : 0.02	x : 0.02	
d : 0.27	c : 0.14	e : 0.12	g : 0.10	i : 0.08	r : 0.06	! : 0.06	[ : 0.04	q : 0.04	" : 0.02	o : 0.02	f : 0.02	x : 0.02	
d : 0.21	o : 0.14	c : 0.14	e : 0.12	g : 0.10	q : 0.06	r : 0.06	a : 0.06	i : 0.04	! : 0.02	f : 0.02	x : 0.02	
n : 0.30	o : 0.25	c : 0.08	q : 0.06	r : 0.06	e : 0.06	l : 0.04	i : 0.04	m : 0.02	b : 0.02	d : 0.02	f : 0.02	x : 0.02	
n : 0.30	o : 0.25	l : 0.12	m : 0.08	q : 0.06	r : 0.06	c : 0.06	b : 0.02	f : 0.02	x : 0.02	
n : 0.30	o : 0.25	l : 0.18	m : 0.08	q : 0.06	r : 0.06	c : 0.02	f : 0.02	x : 0.02	
n : 0.30	o : 0.25	l : 0.16	m : 0.08	q : 0.06	r : 0.06	g : 0.04	f : 0.02	x : 0.02	
n : 0.30	o : 0.23	l : 0.08	q : 0.06	r : 0.06	e : 0.06	m : 0.06	g : 0.04	i : 0.04	b : 0.02	# : 0.02	x : 0.02	
d : 0.23	c : 0.14	o : 0.12	e : 0.10	g : 0.08	i : 0.08	r : 0.06	a : 0.06	b : 0.04	q : 0.02	l : 0.02	# : 0.02	= : 0.02	
d : 0.32	c : 0.18	e : 0.12	g : 0.10	i : 0.08	] : 0.04	2 : 0.04	r : 0.04	q : 0.02	b : 0.02	# : 0.02	= : 0.02	
d : 0.32	c : 0.19	g : 0.12	e : 0.12	i : 0.08	2 : 0.04	b : 0.04	f : 0.02	] : 0.02	# : 0.02	= : 0.02	
d : 0.32	g : 0.14	e : 0.14	c : 0.08	i : 0.08	] : 0.06	5 : 0.04	b : 0.04	= : 0.04	f : 0.02	3 : 0.02	2 : 0.02	
3 : 0.16	g : 0.14	2 : 0.12	c : 0.08	d : 0.08	e : 0.08	i : 0.08	4 : 0.06	] : 0.06	5 : 0.04	= : 0.04	f : 0.02	b : 0.02	a : 0.02	
2 : 0.16	3 : 0.16	c : 0.12	g : 0.12	] : 0.08	4 : 0.08	i : 0.08	f : 0.04	e : 0.04	b : 0.04	5 : 0.04	= : 0.04	
c : 0.16	3 : 0.14	g : 0.12	2 : 0.08	4 : 0.08	b : 0.08	i : 0.08	a : 0.06	= : 0.06	f : 0.04	e : 0.04	5 : 0.04	] : 0.02	
c : 0.16	g : 0.12	] : 0.12	4 : 0.10	f : 0.10	= : 0.08	b : 0.08	i : 0.08	d : 0.04	e : 0.04	5 : 0.04	a : 0.02	2 : 0.02	
c : 0.16	g : 0.12	4 : 0.10	= : 0.10	f : 0.08	e : 0.08	b : 0.08	] : 0.06	i : 0.06	a : 0.04	2 : 0.04	d : 0.04	3 : 0.04	
g : 0.10	f : 0.10	= : 0.10	c : 0.10	2 : 0.10	b : 0.10	3 : 0.10	4 : 0.08	e : 0.08	] : 0.04	d : 0.04	i : 0.04	a : 0.02	
3 : 0.14	g : 0.12	2 : 0.12	f : 0.10	e : 0.10	= : 0.10	4 : 0.08	c : 0.06	b : 0.06	d : 0.04	i : 0.04	] : 0.02	> : 0.02	
3 : 0.16	g : 0.14	f : 0.10	e : 0.10	= : 0.10	i : 0.08	2 : 0.08	] : 0.08	4 : 0.06	> : 0.04	b : 0.02	c : 0.02	d : 0.02	
f : 0.14	e : 0.14	g : 0.12	3 : 0.12	i : 0.10	= : 0.10	b : 0.06	c : 0.06	d : 0.04	> : 0.04	a : 0.04	4 : 0.02	2 : 0.02	
g : 0.12	i : 0.10	] : 0.10	e : 0.10	3 : 0.10	f : 0.10	= : 0.08	b : 0.08	c : 0.08	4 : 0.06	d : 0.04	> : 0.04	
f : 0.12	e : 0.12	c : 0.12	g : 0.12	i : 0.10	d : 0.08	4 : 0.08	= : 0.06	] : 0.06	b : 0.04	3 : 0.04	> : 0.04	F : 0.02	
c : 0.14	f : 0.12	i : 0.10	e : 0.10	g : 0.10	4 : 0.08	2 : 0.06	= : 0.06	d : 0.06	] : 0.06	b : 0.04	> : 0.04	F : 0.02	3 : 0.02	
c : 0.16	f : 0.12	i : 0.10	d : 0.10	e : 0.10	g : 0.10	2 : 0.08	4 : 0.06	= : 0.04	> : 0.04	F : 0.02	I : 0.02	b : 0.02	a : 0.02	3 : 0.02	
c : 0.12	d : 0.12	f : 0.10	i : 0.08	e : 0.08	] : 0.08	: : 0.06	a : 0.06	g : 0.06	= : 0.04	2 : 0.04	> : 0.04	3 : 0.04	F : 0.02	I : 0.02	4 : 0.02	C : 0.02	

#score	616.6332658516159
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_CDS_m2_run1.txt

#BEAR
ebb[bb[bbnnnnnbb]bbbb]	chr1:234614072-234614332(-)$1	260	108	130	7.3498
fffff[cccnnnnncccfffff	chr12:62996785-62997002(+)$1	217	15	37	8.6933
bgggggggooooooggggggg]	chr2:231902493-231902754(+)$1	261	157	179	9.0987
a[gggggggnnnnnggggggg]	chr17:79860502-79860766(-)$1	264	98	120	9.7615
bbffffffooooooffffff]b	chr6:144809778-144809994(+)$1	216	118	140	6.8243
ccc[ccccccmmmmccc22ccc	chr9:101558572-101558850(-)$1	278	216	238	7.3425
[ccc"""bbnnnnnbbccc]cc	chr19:46522370-46522671(+)$1	301	144	166	8.8008
ccc[ccccccmmmmccc]ccc]	chr17:80197785-80198011(+)$1	226	99	121	7.3463
[eeeee[bbnnnnnbb22eeee	chr22:20073375-20073639(+)$1	264	227	249	8.2529
!!a!!cccooooooccc22a22	chr3:49050193-49050494(+)$1	301	199	221	9.2975
eeeeecccooooooccc::ccc	chr3:49050843-49051138(+)$1	295	44	66	7.0031
gggggcccooooooccc22ggg	chr8:103424328-103424631(-)$1	303	46	68	9.7599
####a[cccnnnnnccc]a444	chr9:101558650-101558912(-)$1	262	35	57	8.9900
fffff!!bbnnnnnbb22ffff	chr3:49055820-49056130(-)$1	310	205	227	7.9963
eeebb[cccnnnnncccbb22e	chr14:24901507-24901777(+)$1	270	185	207	8.2070
======[ccclllccc======	chr12:62996652-62996877(+)$1	225	180	202	8.8024
=========oooooo=======	chr17:36760601-36760863(-)$1	262	192	214	9.4356
!iiiiiiiiillliiiiiiiii	chr5:179046223-179046484(-)$1	261	129	151	8.3239
d!!ffffffooooooffffff2	chr22:20074000-20074330(+)$1	330	243	265	7.0142
[eeeee[bbnnnnnbbeeeee]	chr12:62996677-62996969(+)$1	292	66	88	8.2197
c[gggggggnnnnnggggggg]	chr19:917368-917661(+)$1	293	128	150	9.7670
bgggggggooooooggggggg]	chr2:231902428-231902693(+)$1	265	222	244	9.0987
cc[a!!bbammmma]bb22a]c	chr10:120802012-120802296(-)$1	284	231	253	6.8759
b[bb[ddddnnnnndddd]bb]	chr16:28878142-28878383(+)$1	241	147	169	7.2407
======[ccclllccc======	chr12:62996802-62997021(+)$1	219	30	52	8.8024
iiiiiicccnnnnnccc22iii	chr12:19592491-19592784(+)$1	293	219	241	10.6523
eeee[ddddnnnnndddd]eee	chr17:79972868-79973103(+)$1	235	52	74	7.7607
""dddd[bbnnnnnbb22dddd	chr22:20073596-20073818(+)$1	222	6	28	7.2680
hhhh[bb[annnnna]bb]hhh	chr22:20073439-20073660(+)$1	221	173	195	8.8713
fffa[cccooooooccca::ee	chr10:70481251-70481487(+)$1	236	170	192	6.7449
hhhhhh[bbnnnnnbb]hhhhh	chr13:113863808-113864055(+)$1	247	220	242	8.0530
eeeffffffnnnnnffffff]e	chr6:7581201-7581452(+)$1	251	174	196	7.9715
:eeeee!!ccclllccc22eee	chr7:77166718-77166983(+)$1	265	199	221	6.2823
bb[ccc[annnnna]ccc333b	chr22:20073885-20074174(+)$1	289	246	268	7.7573
eeee:cccoooooocccfffff	chr12:72056738-72057002(-)$1	264	141	163	7.3424
cdddd!!cccmmmmccc22ddd	chr22:20073651-20073904(+)$1	253	130	152	6.2977
hhhh[bb[annnnna]bb]hhh	chr22:20073460-20073683(+)$1	223	152	174	8.8713
iiiiiicccmmmmccc333iii	chr1:27320160-27320412(+)$1	252	123	145	8.0956
eeeee[a[aooooooa]a]eee	chr22:20073745-20073984(+)$1	239	143	165	8.3318
==========lll=========	chr12:62997004-62997266(+)$1	262	157	179	8.9062
e[bb[bbcccmmmmccc22bb]	chr2:54856728-54856971(+)$1	243	213	235	6.6683
hhhh[bb[annnnna]bb]hhh	chr22:20073483-20073710(+)$1	227	129	151	8.8713
ggggg[bboooooobbgggggg	chr2:54197724-54198040(-)$1	316	227	249	8.9595
dd!!ddddoooooodddd]ddd	chr7:150935603-150935845(+)$1	242	206	228	6.5986
eeeebb[cccmmmmccc]bb33	chr17:57232267-57232552(-)$1	285	160	182	6.5512
======[ccclllccc======	chr12:62996821-62997049(+)$1	228	11	33	8.8024
hhhh[bb[annnnna]bb]hhh	chr22:20073510-20073741(+)$1	231	102	124	8.8713
:gggggggoooooogggggggE	chr1:19487406-19487667(-)$1	261	210	232	6.8877
hhhh[bb[annnnna]bb]hhh	chr22:20073541-20073768(+)$1	227	71	93	8.8713
hhhhh[bboooooobb]hhhhh	chr1:1284336-1284625(-)$1	289	28	50	7.6006
[ccc[bb[ccclllccc]bb]c	chr7:11022475-11022744(+)$1	269	35	57	7.2948
eeeffffffnnnnnffffff22	chr3:184044979-184045233(+)$1	254	200	222	7.7100
ee[gggggggmmmmggggggge	chr1:19441218-19441471(-)$1	253	187	209	6.8089

#otherMatches

#Seq PSSM
CCGUGUGGGGCGGGCUGGCCGC	chr1:234614072-234614332(-)$1	260	108	130	7.3498
UGGCCUGGGGACUUCCCGGCUA	chr12:62996785-62997002(+)$1	217	15	37	8.6933
GCCUGCGGGAGAUGCUGCGGGA	chr2:231902493-231902754(+)$1	261	157	179	9.0987
GGUGGGGGCGGGGGGCCCCCAG	chr17:79860502-79860766(-)$1	264	98	120	9.7615
GGGAGCUGGACAAACAGCUCAC	chr6:144809778-144809994(+)$1	216	118	140	6.8243
cggagccggcgggggccgaggu	chr9:101558572-101558850(-)$1	278	216	238	7.3425
GGCCAAUUCUGGAUGAGGUGGU	chr19:46522370-46522671(+)$1	301	144	166	8.8008
GCGGGUGCCCUGGCGGGCCGCG	chr17:80197785-80198011(+)$1	226	99	121	7.3463
CCUGCAAACGUCCAGUGGUGCA	chr22:20073375-20073639(+)$1	264	227	249	8.2529
AUCUUUGUCAAGGAACGUUGUC	chr3:49050193-49050494(+)$1	301	199	221	9.2975
AACCCUCGGUCACACGAGAAGC	chr3:49050843-49051138(+)$1	295	44	66	7.0031
UUCCCUCCAUUUGGGGACUGGG	chr8:103424328-103424631(-)$1	303	46	68	9.7599
ggcgcgggcggguggccggaag	chr9:101558650-101558912(-)$1	262	35	57	8.9900
GUGUGGAUCAAGGAGACGCGCA	chr3:49055820-49056130(-)$1	310	205	227	7.9963
UGGUGACUGGCACACAGCGUUU	chr14:24901507-24901777(+)$1	270	185	207	8.2070
GCUGUUUGGCGGAGCCGGCGGC	chr12:62996652-62996877(+)$1	225	180	202	8.8024
UUGUGGGACAAGGAGGUCCUGC	chr17:36760601-36760863(-)$1	262	192	214	9.4356
AGUACGGGGGAGGCCUUCGUGC	chr5:179046223-179046484(-)$1	261	129	151	8.3239
AAACCCAAAGAGAGAUUUGGGA	chr22:20074000-20074330(+)$1	330	243	265	7.0142
CGUUUUCGCCUCCUGUAGAGCU	chr12:62996677-62996969(+)$1	292	66	88	8.2197
GCGGCCAUGCACACCGUGGCUA	chr19:917368-917661(+)$1	293	128	150	9.7670
GCCUGCGGGAGAUGCUGCGGGA	chr2:231902428-231902693(+)$1	265	222	244	9.0987
GCGUAACACAGAUGAUGACAGG	chr10:120802012-120802296(-)$1	284	231	253	6.8759
UGCUGCUUCGAAGUGAAGGAGA	chr16:28878142-28878383(+)$1	241	147	169	7.2407
GCUGUUUGGCGGAGCCGGCGGC	chr12:62996802-62997021(+)$1	219	30	52	8.8024
UUCGGCGGCGCGGGGCCGGGCU	chr12:19592491-19592784(+)$1	293	219	241	10.6523
GGGACGGUGUGACCCACUUUCC	chr17:79972868-79973103(+)$1	235	52	74	7.7607
CCUGCAAACGUCCAGUGGUGCA	chr22:20073596-20073818(+)$1	222	6	28	7.2680
UCCAGUGGUGCAGAGGUAAUGG	chr22:20073439-20073660(+)$1	221	173	195	8.8713
UGCGUGGUAAACGAGCCCAGGG	chr10:70481251-70481487(+)$1	236	170	192	6.7449
gcgcccgccaagccggggggcg	chr13:113863808-113864055(+)$1	247	220	242	8.0530
GGAAGAGCUGAGGAGGCUCUCU	chr6:7581201-7581452(+)$1	251	174	196	7.9715
AGUCCUGACCACAAUGGGGAGG	chr7:77166718-77166983(+)$1	265	199	221	6.2823
GCAGGCGGGUUCACGGCUAAAG	chr22:20073885-20074174(+)$1	289	246	268	7.7573
GAGGAGGAGCAGGAUCCGGGUU	chr12:72056738-72057002(-)$1	264	141	163	7.3424
CCCGGCACGCACCUGCGGUCCG	chr22:20073651-20073904(+)$1	253	130	152	6.2977
UCCAGUGGUGCAGAGGUAAUGG	chr22:20073460-20073683(+)$1	223	152	174	8.8713
GGCUGCCGCAUCAGCGCCUGCG	chr1:27320160-27320412(+)$1	252	123	145	8.0956
GUGCUGUACACAGGAGCAGAGC	chr22:20073745-20073984(+)$1	239	143	165	8.3318
GUGGAGGGAGCGGCUCUCUCCG	chr12:62997004-62997266(+)$1	262	157	179	8.9062
UGAGCGGGGCGCUGGUCAGCCA	chr2:54856728-54856971(+)$1	243	213	235	6.6683
UCCAGUGGUGCAGAGGUAAUGG	chr22:20073483-20073710(+)$1	227	129	151	8.8713
CUGCUGCCCUACGCGGAGCGGC	chr2:54197724-54198040(-)$1	316	227	249	8.9595
CUCAGCCCCAGGAAGGGCAAGG	chr7:150935603-150935845(+)$1	242	206	228	6.5986
GAGGCUGGACCAGAGUCGAGUU	chr17:57232267-57232552(-)$1	285	160	182	6.5512
GCUGUUUGGCGGAGCCGGCGGC	chr12:62996821-62997049(+)$1	228	11	33	8.8024
UCCAGUGGUGCAGAGGUAAUGG	chr22:20073510-20073741(+)$1	231	102	124	8.8713
GCCUCUGCCGCACAGUAGAGGG	chr1:19487406-19487667(-)$1	261	210	232	6.8877
UCCAGUGGUGCAGAGGUAAUGG	chr22:20073541-20073768(+)$1	227	71	93	8.8713
gggcggucgggcgggggcgccc	chr1:1284336-1284625(-)$1	289	28	50	7.6006
GAGGAUGACAAUGAUUGGCGAC	chr7:11022475-11022744(+)$1	269	35	57	7.2948
AGGGGCUGCGCAAGGCAGCUAG	chr3:184044979-184045233(+)$1	254	200	222	7.7100
GACUCAGGGCUGUGGCCUUGAU	chr1:19441218-19441471(-)$1	253	187	209	6.8089

#DB
(((.((.((.....)).)))).	chr1:234614072-234614332(-)$1	1	108	130	7.3498
(((((.(((.....))))))))	chr12:62996785-62997002(+)$1	1	15	37	8.6933
((((((((......))))))).	chr2:231902493-231902754(+)$1	1	157	179	9.0987
(.(((((((.....))))))).	chr17:79860502-79860766(-)$1	1	98	120	9.7615
((((((((......)))))).)	chr6:144809778-144809994(+)$1	1	118	140	6.8243
(((.((((((....)))..)))	chr9:101558572-101558850(-)$1	1	216	238	7.3425
.(((...((.....))))).))	chr19:46522370-46522671(+)$1	1	144	166	8.8008
(((.((((((....))).))).	chr17:80197785-80198011(+)$1	1	99	121	7.3463
.(((((.((.....))..))))	chr22:20073375-20073639(+)$1	1	227	249	8.2529
..(..(((......)))..)..	chr3:49050193-49050494(+)$1	1	199	221	9.2975
)))))(((......)))..(((	chr3:49050843-49051138(+)$1	1	44	66	7.0031
((((((((......)))..)))	chr8:103424328-103424631(-)$1	1	46	68	9.7599
....(.(((.....))).)...	chr9:101558650-101558912(-)$1	1	35	57	8.9900
(((((..((.....))..))))	chr3:49055820-49056130(-)$1	1	205	227	7.9963
(((((.(((.....)))))..)	chr14:24901507-24901777(+)$1	1	185	207	8.2070
((((((.(((...)))))))))	chr12:62996652-62996877(+)$1	1	180	202	8.8024
(((((((((......)))))))	chr17:36760601-36760863(-)$1	1	192	214	9.4356
.(((((((((...)))))))))	chr5:179046223-179046484(-)$1	1	129	151	8.3239
(..((((((......)))))).	chr22:20074000-20074330(+)$1	1	243	265	7.0142
.(((((.((.....))))))).	chr12:62996677-62996969(+)$1	1	66	88	8.2197
(.(((((((.....))))))).	chr19:917368-917661(+)$1	1	128	150	9.7670
((((((((......))))))).	chr2:231902428-231902693(+)$1	1	222	244	9.0987
((.(..(((....).))..).)	chr10:120802012-120802296(-)$1	1	231	253	6.8759
(.((.((((.....)))).)).	chr16:28878142-28878383(+)$1	1	147	169	7.2407
((((((.(((...)))))))))	chr12:62996802-62997021(+)$1	1	30	52	8.8024
(((((((((.....)))..)))	chr12:19592491-19592784(+)$1	1	219	241	10.6523
((((.((((.....)))).)))	chr17:79972868-79973103(+)$1	1	52	74	7.7607
..((((.((.....))..))))	chr22:20073596-20073818(+)$1	1	6	28	7.2680
((((.((.(.....).)).)))	chr22:20073439-20073660(+)$1	1	173	195	8.8713
)))(.(((......))))..((	chr10:70481251-70481487(+)$1	1	170	192	6.7449
((((((.((.....)).)))))	chr13:113863808-113864055(+)$1	1	220	242	8.0530
(((((((((.....)))))).)	chr6:7581201-7581452(+)$1	1	174	196	7.9715
.(((((..(((...)))..)))	chr7:77166718-77166983(+)$1	1	199	221	6.2823
((.(((.(.....).)))...)	chr22:20073885-20074174(+)$1	1	246	268	7.7573
)))).(((......)))(((((	chr12:72056738-72057002(-)$1	1	141	163	7.3424
)((((..(((....)))..)))	chr22:20073651-20073904(+)$1	1	130	152	6.2977
((((.((.(.....).)).)))	chr22:20073460-20073683(+)$1	1	152	174	8.8713
(((((((((....)))...)))	chr1:27320160-27320412(+)$1	1	123	145	8.0956
(((((.(.(......).).)))	chr22:20073745-20073984(+)$1	1	143	165	8.3318
((((((((((...)))))))))	chr12:62997004-62997266(+)$1	1	157	179	8.9062
(.((.(((((....)))..)).	chr2:54856728-54856971(+)$1	1	213	235	6.6683
((((.((.(.....).)).)))	chr22:20073483-20073710(+)$1	1	129	151	8.8713
(((((.((......))))))))	chr2:54197724-54198040(-)$1	1	227	249	8.9595
((..((((......)))).)))	chr7:150935603-150935845(+)$1	1	206	228	6.5986
((((((.(((....))).))..	chr17:57232267-57232552(-)$1	1	160	182	6.5512
((((((.(((...)))))))))	chr12:62996821-62997049(+)$1	1	11	33	8.8024
((((.((.(.....).)).)))	chr22:20073510-20073741(+)$1	1	102	124	8.8713
.(((((((......))))))))	chr1:19487406-19487667(-)$1	1	210	232	6.8877
((((.((.(.....).)).)))	chr22:20073541-20073768(+)$1	1	71	93	8.8713
(((((.((......)).)))))	chr1:1284336-1284625(-)$1	1	28	50	7.6006
.(((.((.(((...))).)).)	chr7:11022475-11022744(+)$1	1	35	57	7.2948
(((((((((.....))))))..	chr3:184044979-184045233(+)$1	1	200	222	7.7100
((.(((((((....))))))))	chr1:19441218-19441471(-)$1	1	187	209	6.8089

#PSSM
e : 0.20	h : 0.13	b : 0.09	c : 0.09	= : 0.09	[ : 0.07	f : 0.05	! : 0.03	g : 0.03	d : 0.03	i : 0.03	: : 0.03	a : 0.01	# : 0.01	" : 0.01	
e : 0.22	h : 0.13	g : 0.09	c : 0.09	= : 0.09	[ : 0.07	b : 0.05	f : 0.05	i : 0.05	! : 0.03	d : 0.03	# : 0.01	" : 0.01	
e : 0.20	g : 0.13	h : 0.13	= : 0.09	f : 0.07	c : 0.07	b : 0.05	i : 0.05	[ : 0.05	! : 0.03	d : 0.03	a : 0.01	# : 0.01	
g : 0.15	e : 0.15	h : 0.13	f : 0.11	= : 0.09	[ : 0.05	c : 0.05	b : 0.05	i : 0.05	! : 0.03	a : 0.03	d : 0.03	# : 0.01	
[ : 0.18	g : 0.15	f : 0.11	e : 0.09	= : 0.09	b : 0.05	c : 0.05	i : 0.05	d : 0.05	! : 0.03	h : 0.03	" : 0.01	a : 0.01	: : 0.01	
b : 0.16	c : 0.15	[ : 0.11	g : 0.11	= : 0.09	f : 0.07	d : 0.07	e : 0.05	! : 0.05	i : 0.05	" : 0.01	h : 0.01	
c : 0.22	[ : 0.18	b : 0.18	g : 0.11	f : 0.07	! : 0.05	d : 0.05	= : 0.03	" : 0.01	i : 0.01	a : 0.01	
c : 0.33	b : 0.18	[ : 0.13	g : 0.11	f : 0.07	d : 0.05	= : 0.03	i : 0.01	! : 0.01	a : 0.01	
c : 0.28	o : 0.22	b : 0.13	a : 0.13	g : 0.05	f : 0.05	= : 0.03	d : 0.03	i : 0.01	n : 0.01	
n : 0.43	o : 0.28	c : 0.18	m : 0.03	i : 0.01	= : 0.01	g : 0.01	
n : 0.43	o : 0.28	m : 0.15	l : 0.09	c : 0.03	
n : 0.43	o : 0.28	m : 0.15	l : 0.13	
n : 0.43	o : 0.28	m : 0.15	l : 0.13	
n : 0.41	o : 0.28	m : 0.11	c : 0.07	a : 0.03	l : 0.03	i : 0.01	= : 0.01	
c : 0.37	b : 0.16	g : 0.11	a : 0.09	f : 0.05	o : 0.05	d : 0.05	] : 0.03	i : 0.01	= : 0.01	
c : 0.39	b : 0.18	g : 0.11	] : 0.09	f : 0.07	d : 0.05	= : 0.03	i : 0.01	a : 0.01	
c : 0.33	g : 0.13	b : 0.11	= : 0.09	] : 0.07	f : 0.07	2 : 0.05	d : 0.05	i : 0.01	e : 0.01	3 : 0.01	
2 : 0.20	b : 0.13	g : 0.13	f : 0.11	= : 0.09	] : 0.07	d : 0.05	c : 0.03	a : 0.03	h : 0.03	: : 0.01	i : 0.01	e : 0.01	3 : 0.01	
] : 0.16	2 : 0.15	f : 0.13	g : 0.13	= : 0.09	b : 0.07	c : 0.03	e : 0.03	: : 0.03	h : 0.03	3 : 0.03	a : 0.01	i : 0.01	d : 0.01	
g : 0.15	f : 0.13	h : 0.13	b : 0.09	e : 0.09	= : 0.09	c : 0.05	i : 0.05	d : 0.05	a : 0.03	] : 0.01	4 : 0.01	2 : 0.01	: : 0.01	3 : 0.01	
g : 0.15	h : 0.13	e : 0.11	= : 0.09	f : 0.07	] : 0.07	c : 0.07	b : 0.05	2 : 0.05	i : 0.05	d : 0.05	3 : 0.03	4 : 0.01	
] : 0.16	e : 0.15	h : 0.13	c : 0.09	= : 0.09	f : 0.05	2 : 0.05	i : 0.05	d : 0.05	b : 0.03	g : 0.03	4 : 0.01	3 : 0.01	E : 0.01	

#score	428.00952085616393
#seq	53
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_UTR_m2_run2.txt

#BEAR
cc[a!!eeeeeuuuuuuuuuuuueeeee22accc	chr3:195777989-195778247(-)$1	258	83	117	26.1402
ccc####dddduuuuuuuuuuuudddd333ccc]	chr17:47127506-47127729(+)$1	223	81	115	26.6625
FF::ffffffvvvvvvvvvvvvvffffff:eeee	chr10:102122601-102122845(+)$1	244	28	62	20.6972
==[a####bbwwwwwwwwwwwwwwbb22a]====	chr17:1465750-1466015(-)$1	265	198	232	24.0901
ddddgggggggvvvvvvvvvvvvvggggggg]dd	chr1:92146420-92146679(-)$1	259	19	53	26.4113
e"""gggggggyyyyyyyyyyyyyyyyggggggg	chr15:73595723-73595992(+)$1	269	157	191	23.0228
ffffff[cccuuuuuuuuuuuuccc]ffffffa[	chr17:56167525-56167770(+)$1	245	0	34	23.8628
============ttttttttttt===========	chr1:150547225-150547507(-)$1	282	178	212	26.2647
::hhhhhhhhvvvvvvvvvvvvvhhhhhhhhfff	chr9:33113163-33113392(-)$1	229	9	43	22.2996
eeeeedddd[auuuuuuuuuuuuaddddgggggg	chr1:109856361-109856605(-)$1	244	116	150	26.0275
dd[ffffff[avvvvvvvvvvvvva]ffffff]d	chr16:67596434-67596727(-)$1	293	61	95	25.3636
::a[gggggggtttttttttttggggggg]a::e	chr5:114950439-114950722(-)$1	283	22	56	21.2468
ggggg!!ddddtttttttttttdddd22gggggg	chr1:36787655-36787970(+)$1	315	7	41	25.3325
e[iiiiiiiiiwwwwwwwwwwwwwwiiiiiiiii	chr16:75283453-75283670(-)$1	217	46	80	25.6281
ggg[ffffffvvvvvvvvvvvvvffffffggggg	chr19:44127066-44127334(-)$1	268	95	129	25.4230
============ttttttttttt===========	chr19:58991074-58991372(-)$1	298	176	210	26.2647
ffffff[eeeeettttttttttteeeeeffffff	chr11:2153479-2153711(-)$1	232	18	52	24.2953
eeeee"""ddddtttttttttttdddd333eeee	chr19:6414481-6414726(-)$1	245	190	224	24.7985
ccc####dddduuuuuuuuuuuudddd333ccc]	chr17:47127447-47127678(+)$1	231	140	174	26.6625
fffff[ddddwwwwwwwwwwwwwwdddd333fff	chr16:57417159-57417409(+)$1	250	160	194	24.3019
bb####bbyyyyyyyyyyyyyyyybb333bb333	chr16:69165873-69166163(-)$1	290	58	92	21.2616
hhh[cccddddtttttttttttdddd]ccc22hh	chr12:46751925-46752171(-)$1	246	181	215	23.4268
=======[cccvvvvvvvvvvvvvccc]======	chr2:97525575-97525832(-)$1	257	208	242	27.3364
ffffhhhhhhhhttttttttttthhhhhhhh22f	chr17:2592928-2593201(-)$1	273	219	253	22.5131
==========wwwwwwwwwwwwww==========	chr1:205683227-205683489(-)$1	262	178	212	26.1361
ddd[ggggggguuuuuuuuuuuuggggggg]ddd	chr2:48010559-48010867(+)$1	308	204	238	26.3904
ffffff[eeeeettttttttttteeeeeffffff	chr11:2153578-2153782(-)$1	204	89	123	24.2953
c[iiiiiiiiiuuuuuuuuuuuuiiiiiiiii]c	chr11:61197165-61197469(-)$1	304	237	271	27.3604
e[iiiiiiiiivvvvvvvvvvvvviiiiiiiii]	chr2:159313489-159313743(+)$1	254	140	174	27.4948
"a[bb[eeeeeuuuuuuuuuuuueeeee]bb]a3	chr16:848358-848617(+)$1	259	77	111	25.3736
ffffff[eeeeettttttttttteeeeeffffff	chr11:2153582-2153832(-)$1	250	139	173	24.2953
eedddd[ddddvvvvvvvvvvvvvdddd]dddd]	chr19:48886128-48886346(-)$1	218	115	149	25.0950
:eeeeeeeeeettttttttttteeeee]eeeee:	chr1:230838512-230838740(-)$1	228	5	39	22.0081
ggggggg"""bbtttttttttttbb333gggggg	chr2:183902833-183903075(-)$1	242	128	162	24.7429
deeeeeddddwwwwwwwwwwwwwwdddd]eeeee	chr1:236140683-236140919(-)$1	236	157	191	23.9193
dd!!a[cccavvvvvvvvvvvvva]ccc]a22dd	chr11:9467791-9468055(+)$1	264	31	65	25.9943
dddd[ffffffuuuuuuuuuuuuffffffdddd]	chr19:575279-575506(+)$1	227	128	162	24.2536
dd[eeeee!!auuuuuuuuuuuua22eeeeeddd	chr9:138901916-138902175(-)$1	259	51	85	25.0922
ccc:gggggggwwwwwwwwwwwwwwggggggg::	chr6:117996596-117996878(+)$1	282	48	82	22.1511
ddd[ffffffwwwwwwwwwwwwwwffffff]ddd	chr14:103399128-103399408(+)$1	280	27	61	23.4787
d[hhhhhhhhbbtttttttttttbb]hhhhhhhh	chr5:179155986-179156226(+)$1	240	191	225	22.7330
!ccc!!ccc[attttttttttta]ccc]ccc]dd	chr3:49044895-49045152(+)$1	257	95	129	25.8472
[dddd"""cccuuuuuuuuuuuuccc]dddd]ee	chr7:1577785-1578063(+)$1	278	207	241	25.2042
ccc####dddduuuuuuuuuuuudddd333ccc]	chr17:47127529-47127794(+)$1	265	58	92	26.6625
eeeehhhhhhhhttttttttttthhhhhhhh22e	chr7:77166635-77166867(+)$1	232	15	49	22.6447
ccc[hhhhhhhhttttttttttthhhhhhhh]cc	chr19:7978293-7978581(+)$1	288	66	100	23.5219
cc!!bb[cccwwwwwwwwwwwwwwccc22bb444	chr20:1918791-1919102(+)$1	311	137	171	24.3044
fffff!!dddduuuuuuuuuuuudddd]ffffff	chr1:25826080-25826342(+)$1	262	30	64	25.7626
eeeee!!ddddtttttttttttdddd22eeeee2	chr15:35271713-35271985(-)$1	272	194	228	24.0223
hbb!!eeeeevvvvvvvvvvvvveeeee22bb]h	chr11:2159442-2159661(-)$1	219	67	101	24.5558
!!hhhhhhhhwwwwwwwwwwwwwwhhhhhhhhcc	chr3:49571748-49571972(+)$1	224	183	217	23.3732
dddd[eeeeewwwwwwwwwwwwwweeeeedddd]	chr16:29817823-29818170(-)$1	347	17	51	23.9413

#otherMatches

#Seq PSSM
GAAGCCAAAGACUUAGUAUAUUUUCUUUUCCUCU	chr3:195777989-195778247(-)$1	258	83	117	26.1402
CCUCUCCCGUGUAGGUUUCACAUUAUGUCCAGGU	chr17:47127506-47127729(+)$1	223	81	115	26.6625
CAAAAGAGGGUUUAUUUUCAGUCCCCUCUCUCUG	chr10:102122601-102122845(+)$1	244	28	62	20.6972
GUGCGGAAGCGGGGAGGAGGGAGGGUGGGGACGG	chr17:1465750-1466015(-)$1	265	198	232	24.0901
UGUAUCUGCAGUCUUUUGUUAUUUCUGCAGGCUA	chr1:92146420-92146679(-)$1	259	19	53	26.4113
GAAUGUUUCUGUCAUUGUACUUUCUUCCAGAAGC	chr15:73595723-73595992(+)$1	269	157	191	23.0228
UUAGUUAGGUCUUAGCAAUCAAACCAAAUUGAUG	chr17:56167525-56167770(+)$1	245	0	34	23.8628
GGCAAAUCCUCCAAAAGGGAAAGGGAGGAUUUGC	chr1:150547225-150547507(-)$1	282	178	212	26.2647
CUGGGCUGGUCCCUCUCAUUUUUACCAGUCUGAG	chr9:33113163-33113392(-)$1	229	9	43	22.2996
ACCCUGAGCACUUUUUUACAAUUGGCUCUGAGAA	chr1:109856361-109856605(-)$1	244	116	150	26.0275
GGCGGCCCGCGAAACCUCCUCCACCCCGGGCCCC	chr16:67596434-67596727(-)$1	293	61	95	25.3636
AAGUAUUAUCUGAUAGAAUACAAGAUGAUUCAAA	chr5:114950439-114950722(-)$1	283	22	56	21.2468
ACUUCACCUCUUCAUCGACCCCAGAGAGGGAGUG	chr1:36787655-36787970(+)$1	315	7	41	25.3325
CCUUUAGGAGGUCCUACCACCCUUUUCUUCUGAG	chr16:75283453-75283670(-)$1	217	46	80	25.6281
CAAGUCCAGUGAGGGCAGUAGGGAUUGGGUUGGG	chr19:44127066-44127334(-)$1	268	95	129	25.4230
CUGGGUAGGGCUGGUAGCACAGAGGCCCUGCCCA	chr19:58991074-58991372(-)$1	298	176	210	26.2647
GGACUUUGAGUCAAAUUGGCCUGGACUUGAGUCC	chr11:2153479-2153711(-)$1	232	18	52	24.2953
gugggcgugaagaucguugccaccuuccaaccua	chr19:6414481-6414726(-)$1	245	190	224	24.7985
CCUCUCCCGUGUAGGUUUCACAUUAUGUCCAGGU	chr17:47127447-47127678(+)$1	231	140	174	26.6625
UCAGGCCAGGCCCUCUGCCCACUCCCUGCAACCU	chr16:57417159-57417409(+)$1	250	160	194	24.3019
cggaaggcggagggaaggaagggagcgagcgggg	chr16:69165873-69166163(-)$1	290	58	92	21.2616
AAAUACAUGCUUAAUCCUGAGUAGCAGUGUUuuu	chr12:46751925-46752171(-)$1	246	181	215	23.4268
GAGGGUGGGCCUGCUGUGGACAAUGGCAUACUCU	chr2:97525575-97525832(-)$1	257	208	242	27.3364
GGUGGCGGGGGCCCCCACACGCUGCUCCCGCUCC	chr17:2592928-2593201(-)$1	273	219	253	22.5131
GGUGUGUACGUGUGAGUGUGUGUUUGUAUACAUC	chr1:205683227-205683489(-)$1	262	178	212	26.1361
AGAGUUGGCUUGAAUGAGUGCAGGGGUCGAGUCU	chr2:48010559-48010867(+)$1	308	204	238	26.3904
GGACUUUGAGUCAAAUUGGCCUGGACUUGAGUCC	chr11:2153578-2153782(-)$1	204	89	123	24.2953
CCGGGUUUGUCGGGAGGGAGCGGGGCGGGCCUAG	chr11:61197165-61197469(-)$1	304	237	271	27.3604
ccgcggcACUUUUUUAAUUUUUUCGGGUGCCGCA	chr2:159313489-159313743(+)$1	254	140	174	27.4948
guggggcucacaggauggugggaguggggcuggg	chr16:848358-848617(+)$1	259	77	111	25.3736
GGACUUUGAGUCAAAUUGGCCUGGACUUGAGUCC	chr11:2153582-2153832(-)$1	250	139	173	24.2953
CCGGGGCAGGGUCCAAGAUCUUUUCCCUUCCCCA	chr19:48886128-48886346(-)$1	218	115	149	25.0950
AGCAGCCGUUUCUCCUUGGUCUAAGUGUGCUGCA	chr1:230838512-230838740(-)$1	228	5	39	22.0081
CUCUCCUAAGGCGGAGGUCGCGGGCGGGAGGGGA	chr2:183902833-183903075(-)$1	242	128	162	24.7429
UGUCAGCUCCUUGACCUAUGAGCCGGGGCCUGAC	chr1:236140683-236140919(-)$1	236	157	191	23.9193
CUCAUUGGCCUGUUUUUAAUCCUGUGCCUAGAAG	chr11:9467791-9468055(+)$1	264	31	65	25.9943
UCCGCGUCUCCUGUGGGCUUGUCGGGGACCGGAG	chr19:575279-575506(+)$1	227	128	162	24.2536
CUGCAGGCAGGGGAUGACCGGGACAGGCCUGGGC	chr9:138901916-138902175(-)$1	259	51	85	25.0922
CGGGGCUGCCAAGGGAGGAGGAAGAUGGCGGCGG	chr6:117996596-117996878(+)$1	282	48	82	22.1511
UCUACGUGAUCAUACGGGCUACUAAUCACGGGGG	chr14:103399128-103399408(+)$1	280	27	61	23.4787
UGAGUUCCUCCUAAGGAAAUUGAGGAGAGGGACU	chr5:179155986-179156226(+)$1	240	191	225	22.7330
GUGGAAAGGGGGAAAGAAACAGCGCCUCCCAGGG	chr3:49044895-49045152(+)$1	257	95	129	25.8472
CGCCCCUCAGGAACCCCACACCCCCUUGGGCCGC	chr7:1577785-1578063(+)$1	278	207	241	25.2042
CCUCUCCCGUGUAGGUUUCACAUUAUGUCCAGGU	chr17:47127529-47127794(+)$1	265	58	92	26.6625
GGCUGCUCCUGGAAGUUGUGGUGUCGGGAGCCCA	chr7:77166635-77166867(+)$1	232	15	49	22.6447
UGUGGGGGUUUGAGGACGUGUGACAAGCUCCAGC	chr19:7978293-7978581(+)$1	288	66	100	23.5219
GACCCAUCUCUCCCUUCUAGACCUGAGCUUGCCC	chr20:1918791-1919102(+)$1	311	137	171	24.3044
GUGUAUUAUACAUGGGUAGAAAAGUGUUUGCACA	chr1:25826080-25826342(+)$1	262	30	64	25.7626
UUUACAGAGAUGAAACAUGACAGUCUGAGUAAAA	chr15:35271713-35271985(-)$1	272	194	228	24.0223
GCCCCGUCGCACAUUCGGCCCCCGCGACUCGGCC	chr11:2159442-2159661(-)$1	219	67	101	24.5558
AAUUGUUUUAUUAAAAAAAAGAUUUAAAAUGGUG	chr3:49571748-49571972(+)$1	224	183	217	23.3732
ACCUGCAGGGGGUUCUGGGCGUGACCCUGAGGUG	chr16:29817823-29818170(-)$1	347	17	51	23.9413

#DB
((.(..(((((............)))))..))))	chr3:195777989-195778247(-)$1	1	83	117	26.1402
(((....((((............))))...))).	chr17:47127506-47127729(+)$1	1	81	115	26.6625
((..((((((.............)))))).((((	chr10:102122601-102122845(+)$1	1	28	62	20.6972
((.(....((..............))..).))))	chr17:1465750-1466015(-)$1	1	198	232	24.0901
(((((((((((.............))))))).))	chr1:92146420-92146679(-)$1	1	19	53	26.4113
(...(((((((................)))))))	chr15:73595723-73595992(+)$1	1	157	191	23.0228
((((((.(((............))).))))))(.	chr17:56167525-56167770(+)$1	1	0	34	23.8628
((((((((((((...........)))))))))))	chr1:150547225-150547507(-)$1	1	178	212	26.2647
..((((((((.............))))))))(((	chr9:33113163-33113392(-)$1	1	9	43	22.2996
)))))((((.(............)))))((((((	chr1:109856361-109856605(-)$1	1	116	150	26.0275
((.((((((.(.............).)))))).)	chr16:67596434-67596727(-)$1	1	61	95	25.3636
..(.(((((((...........))))))).)..(	chr5:114950439-114950722(-)$1	1	22	56	21.2468
(((((..((((...........))))..))))))	chr1:36787655-36787970(+)$1	1	7	41	25.3325
(.(((((((((..............)))))))))	chr16:75283453-75283670(-)$1	1	46	80	25.6281
(((.((((((.............)))))))))))	chr19:44127066-44127334(-)$1	1	95	129	25.4230
((((((((((((...........)))))))))))	chr19:58991074-58991372(-)$1	1	176	210	26.2647
((((((.(((((...........)))))))))))	chr11:2153479-2153711(-)$1	1	18	52	24.2953
(((((...((((...........))))...))))	chr19:6414481-6414726(-)$1	1	190	224	24.7985
(((....((((............))))...))).	chr17:47127447-47127678(+)$1	1	140	174	26.6625
(((((.((((..............))))...)))	chr16:57417159-57417409(+)$1	1	160	194	24.3019
((....((................))...))...	chr16:69165873-69166163(-)$1	1	58	92	21.2616
(((.(((((((...........)))).)))..))	chr12:46751925-46752171(-)$1	1	181	215	23.4268
(((((((.(((.............))).))))))	chr2:97525575-97525832(-)$1	1	208	242	27.3364
((((((((((((...........))))))))..)	chr17:2592928-2593201(-)$1	1	219	253	22.5131
((((((((((..............))))))))))	chr1:205683227-205683489(-)$1	1	178	212	26.1361
(((.(((((((............))))))).)))	chr2:48010559-48010867(+)$1	1	204	238	26.3904
((((((.(((((...........)))))))))))	chr11:2153578-2153782(-)$1	1	89	123	24.2953
(.(((((((((............))))))))).)	chr11:61197165-61197469(-)$1	1	237	271	27.3604
(.(((((((((.............))))))))).	chr2:159313489-159313743(+)$1	1	140	174	27.4948
.(.((.(((((............))))).)).).	chr16:848358-848617(+)$1	1	77	111	25.3736
((((((.(((((...........)))))))))))	chr11:2153582-2153832(-)$1	1	139	173	24.2953
((((((.((((.............)))).)))).	chr19:48886128-48886346(-)$1	1	115	149	25.0950
.((((((((((...........))))).))))).	chr1:230838512-230838740(-)$1	1	5	39	22.0081
(((((((...((...........))...))))))	chr2:183902833-183903075(-)$1	1	128	162	24.7429
((((((((((..............)))).)))))	chr1:236140683-236140919(-)$1	1	157	191	23.9193
((..(.((((.............).))).)..))	chr11:9467791-9468055(+)$1	1	31	65	25.9943
((((.((((((............)))))))))).	chr19:575279-575506(+)$1	1	128	162	24.2536
((.(((((..(............)..))))))))	chr9:138901916-138902175(-)$1	1	51	85	25.0922
))).(((((((..............)))))))..	chr6:117996596-117996878(+)$1	1	48	82	22.1511
(((.((((((..............)))))).)))	chr14:103399128-103399408(+)$1	1	27	61	23.4787
(.((((((((((...........)).))))))))	chr5:179155986-179156226(+)$1	1	191	225	22.7330
.(((..(((.(...........).))).))).))	chr3:49044895-49045152(+)$1	1	95	129	25.8472
.((((...(((............))).)))).))	chr7:1577785-1578063(+)$1	1	207	241	25.2042
(((....((((............))))...))).	chr17:47127529-47127794(+)$1	1	58	92	26.6625
((((((((((((...........))))))))..)	chr7:77166635-77166867(+)$1	1	15	49	22.6447
(((.((((((((...........)))))))).))	chr19:7978293-7978581(+)$1	1	66	100	23.5219
((..((.(((..............)))..))...	chr20:1918791-1919102(+)$1	1	137	171	24.3044
(((((..((((............)))).))))))	chr1:25826080-25826342(+)$1	1	30	64	25.7626
(((((..((((...........))))..))))).	chr15:35271713-35271985(-)$1	1	194	228	24.0223
(((..(((((.............)))))..)).)	chr11:2159442-2159661(-)$1	1	67	101	24.5558
..((((((((..............))))))))))	chr3:49571748-49571972(+)$1	1	183	217	23.3732
((((.(((((..............))))))))).	chr16:29817823-29818170(-)$1	1	17	51	23.9413

#PSSM
d : 0.19	c : 0.15	e : 0.15	f : 0.13	= : 0.09	: : 0.05	g : 0.05	h : 0.03	! : 0.03	F : 0.01	b : 0.01	" : 0.01	[ : 0.01	
d : 0.17	c : 0.15	f : 0.13	e : 0.13	= : 0.09	[ : 0.07	g : 0.05	: : 0.03	b : 0.03	F : 0.01	" : 0.01	h : 0.01	a : 0.01	! : 0.01	
d : 0.13	f : 0.13	c : 0.11	e : 0.11	[ : 0.09	= : 0.07	h : 0.07	g : 0.05	i : 0.05	! : 0.03	: : 0.01	" : 0.01	a : 0.01	# : 0.01	b : 0.01	
f : 0.15	e : 0.13	[ : 0.11	d : 0.09	# : 0.07	= : 0.07	h : 0.05	i : 0.05	! : 0.05	a : 0.03	: : 0.03	g : 0.03	" : 0.01	b : 0.01	c : 0.01	
f : 0.19	g : 0.13	h : 0.11	e : 0.11	# : 0.09	= : 0.07	! : 0.05	i : 0.05	b : 0.03	d : 0.03	[ : 0.03	c : 0.01	a : 0.01	
f : 0.17	g : 0.11	h : 0.11	! : 0.09	# : 0.09	e : 0.09	= : 0.07	i : 0.05	[ : 0.05	d : 0.03	" : 0.03	c : 0.01	b : 0.01	
e : 0.11	g : 0.11	[ : 0.11	h : 0.11	f : 0.09	# : 0.07	= : 0.07	d : 0.05	! : 0.05	i : 0.05	c : 0.05	" : 0.03	b : 0.01	
d : 0.21	e : 0.17	h : 0.11	f : 0.09	g : 0.09	c : 0.07	= : 0.05	i : 0.05	" : 0.05	# : 0.01	b : 0.01	[ : 0.01	
d : 0.23	e : 0.15	c : 0.11	h : 0.11	f : 0.09	g : 0.09	= : 0.05	i : 0.05	b : 0.01	y : 0.01	" : 0.01	! : 0.01	
d : 0.21	e : 0.15	h : 0.11	g : 0.09	f : 0.07	c : 0.07	= : 0.05	[ : 0.05	i : 0.05	b : 0.01	y : 0.01	" : 0.01	a : 0.01	! : 0.01	
d : 0.17	w : 0.15	e : 0.11	v : 0.09	g : 0.09	a : 0.07	i : 0.05	h : 0.05	= : 0.03	c : 0.03	b : 0.03	u : 0.01	y : 0.01	f : 0.01	
u : 0.24	v : 0.19	w : 0.19	t : 0.11	e : 0.05	h : 0.05	y : 0.03	= : 0.03	b : 0.03	d : 0.01	
t : 0.32	u : 0.24	v : 0.19	w : 0.19	y : 0.03	
t : 0.32	u : 0.24	v : 0.19	w : 0.19	y : 0.03	
t : 0.32	u : 0.24	v : 0.19	w : 0.19	y : 0.03	
t : 0.32	u : 0.24	v : 0.19	w : 0.19	y : 0.03	
t : 0.32	u : 0.24	v : 0.19	w : 0.19	y : 0.03	
t : 0.32	u : 0.24	v : 0.19	w : 0.19	y : 0.03	
t : 0.32	u : 0.24	v : 0.19	w : 0.19	y : 0.03	
t : 0.32	u : 0.24	v : 0.19	w : 0.19	y : 0.03	
t : 0.32	u : 0.24	v : 0.19	w : 0.19	y : 0.03	
t : 0.32	u : 0.24	v : 0.19	w : 0.19	y : 0.03	
u : 0.23	t : 0.21	v : 0.19	w : 0.19	d : 0.05	y : 0.03	c : 0.01	g : 0.01	e : 0.01	a : 0.01	
w : 0.19	d : 0.15	e : 0.13	v : 0.09	h : 0.07	f : 0.05	a : 0.05	y : 0.03	c : 0.03	= : 0.03	g : 0.03	b : 0.03	i : 0.01	] : 0.01	
d : 0.23	e : 0.15	c : 0.09	h : 0.09	f : 0.07	b : 0.07	g : 0.05	= : 0.05	w : 0.03	i : 0.03	y : 0.01	a : 0.01	] : 0.01	2 : 0.01	
d : 0.23	e : 0.15	h : 0.09	c : 0.09	f : 0.07	g : 0.07	] : 0.05	= : 0.05	i : 0.05	b : 0.03	y : 0.01	3 : 0.01	2 : 0.01	
e : 0.17	d : 0.17	f : 0.11	h : 0.11	g : 0.07	c : 0.07	2 : 0.05	= : 0.05	i : 0.05	3 : 0.03	] : 0.03	y : 0.01	
e : 0.15	3 : 0.11	f : 0.11	h : 0.11	g : 0.09	d : 0.09	2 : 0.07	] : 0.07	= : 0.05	i : 0.05	c : 0.03	
f : 0.19	g : 0.15	3 : 0.11	h : 0.11	= : 0.07	] : 0.07	e : 0.07	2 : 0.05	i : 0.05	c : 0.03	a : 0.01	d : 0.01	
g : 0.15	f : 0.13	h : 0.11	3 : 0.09	= : 0.07	d : 0.07	e : 0.07	i : 0.05	b : 0.05	2 : 0.03	] : 0.03	c : 0.03	: : 0.01	a : 0.01	
g : 0.13	e : 0.11	f : 0.11	h : 0.11	= : 0.09	c : 0.07	b : 0.07	d : 0.07	i : 0.05	a : 0.03	2 : 0.03	] : 0.03	3 : 0.01	
f : 0.15	g : 0.11	d : 0.11	e : 0.09	= : 0.09	] : 0.09	c : 0.07	2 : 0.07	i : 0.05	h : 0.03	: : 0.01	3 : 0.01	4 : 0.01	b : 0.01	
d : 0.17	c : 0.11	e : 0.11	f : 0.11	= : 0.09	g : 0.09	] : 0.05	a : 0.03	: : 0.03	i : 0.03	h : 0.03	2 : 0.03	3 : 0.01	4 : 0.01	
] : 0.13	d : 0.13	f : 0.13	e : 0.11	= : 0.09	g : 0.09	c : 0.07	h : 0.05	3 : 0.03	: : 0.03	[ : 0.01	i : 0.01	4 : 0.01	2 : 0.01	

#score	1279.99048406275
#seq	52
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565RQI_SSB_UTR_m1_run2.txt

#BEAR
fffff[ffffff"""a[ddddoooooodddd]affffff]	chr1:3689252-3689484(+)$1	232	132	172	41.8497
fffff[ffffff"""a[ddddoooooodddd]affffff]	chr1:3689284-3689497(+)$1	213	100	140	41.8497

#otherMatches

#Seq PSSM
CGGUGCGGCCGCAGUGGGCAGGUGCGACUGUGCGCGGCCU	chr1:3689252-3689484(+)$1	232	132	172	41.8497
CGGUGCGGCCGCAGUGGGCAGGUGCGACUGUGCGCGGCCU	chr1:3689284-3689497(+)$1	213	100	140	41.8497

#DB
(((((.((((((...(.((((......)))).))))))).	chr1:3689252-3689484(+)$1	1	132	172	41.8497
(((((.((((((...(.((((......)))).))))))).	chr1:3689284-3689497(+)$1	1	100	140	41.8497

#PSSM
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
[ : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
" : 1.00	
" : 1.00	
" : 1.00	
a : 1.00	
[ : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
] : 1.00	
a : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
] : 1.00	

#score	83.69950524259995
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_CDS_m3_run2.txt

#BEAR
GGGGGGG:ccc[cccnnnnnccc]ccc	chr21:46281467-46281762(-)$1	295	45	72	18.0841
DDDDCCCccc!!cccnnnnnccc22cc	chr14:39649897-39650168(+)$1	271	182	209	21.4225
ddd22bbccc!!cccnnnnnccc22cc	chr14:39649968-39650241(+)$1	273	111	138	20.9556

#otherMatches

#Seq PSSM
agacuucagccagugaaGUGCACAGGU	chr21:46281467-46281762(-)$1	295	45	72	18.0841
GCUAGAGAUGGUUGAGAAUGUCAAACA	chr14:39649897-39650168(+)$1	271	182	209	21.4225
GCUAGAGAUGGUUGAGAAUGUCAAACA	chr14:39649968-39650241(+)$1	273	111	138	20.9556

#DB
(((((((.(((.(((.....))).)))	chr21:46281467-46281762(-)$1	1	45	72	18.0841
)))))))(((..(((.....)))..))	chr14:39649897-39650168(+)$1	1	182	209	21.4225
)))..))(((..(((.....)))..))	chr14:39649968-39650241(+)$1	1	111	138	20.9556

#PSSM
G : 0.33	D : 0.33	d : 0.33	
G : 0.33	D : 0.33	d : 0.33	
G : 0.33	D : 0.33	d : 0.33	
G : 0.33	D : 0.33	2 : 0.33	
G : 0.33	C : 0.33	2 : 0.33	
G : 0.33	C : 0.33	b : 0.33	
G : 0.33	C : 0.33	b : 0.33	
c : 0.66	: : 0.33	
c : 1.00	
c : 1.00	
! : 0.66	c : 0.33	
! : 0.66	[ : 0.33	
c : 1.00	
c : 1.00	
c : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
2 : 0.66	] : 0.33	
2 : 0.66	c : 0.33	
c : 1.00	
c : 1.00	

#score	60.46229476149999
#seq	3
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_CDS_m1_run1.txt

#BEAR
cc!!ffffff[eeeeeooooooeeeeeffffff]ccc]	chr14:24109001-24109216(+)$1	215	5	43	12.3185
iiiiiii[ccc[ddddmmmmdddd]ccc333iiiiiii	chr6:170067911-170068279(-)$1	368	169	207	13.5271
c!!ccc[a[ccc[cccooooooccc]ccc]a]ccc22c	chr7:65551630-65551907(+)$1	277	124	162	16.4263
eeeee!!a[ccc[cccooooooccc]ccc]a22eeeee	chr17:34171851-34172128(+)$1	277	112	150	15.5966
gggggccc[ccc[cccccclllccc22ccc]cccccc]	chr2:54197728-54198041(-)$1	313	152	190	13.1643
ggggg[a[bbffffffooooooffffff]bb]a]gggg	chr11:85375448-85375725(-)$1	277	3	41	13.2296
!!bb[bbffffff!!aooooooa22ffffff]bb]bb4	chr17:4575256-4575564(-)$1	308	181	219	11.5253
:ffffffiiiiiiiiiooooooiiiiiiiii333ffff	chr9:100777544-100777790(+)$1	246	18	56	13.5391
=========####cccooooooccc333==========	chr9:131456123-131456396(+)$1	273	40	78	19.8996
d[iiiiiiiii####ddddllldddd333iiiiiiiii	chr6:168343981-168344236(+)$1	255	204	242	14.9720
:==========!!cccooooooccc4444=========	chr14:23450739-23450992(-)$1	253	212	250	18.9197
iiiiiiiiccc!!ddddllldddd22ccc22iiiiiii	chr21:46900512-46900730(+)$1	218	42	80	13.7723
ggggggg"""ffffffooooooffffff4444gggggg	chr2:27593044-27593302(-)$1	258	175	213	14.6212
i[ccc!!bbccc[ddddnnnnndddd]ccc]bb4444c	chr20:61542662-61542954(-)$1	292	183	221	13.0280
dd[ggggggg####bboooooobb4444ggggggg]dd	chr17:43227421-43227682(+)$1	261	146	184	15.0068
bb!!bb!!dddd[cccoooooocccdddd4444bb333	chr19:36297262-36297528(-)$1	266	141	179	14.9900
e[bb"""a[gggggggooooooggggggga333bbeee	chr6:138753465-138753718(-)$1	253	76	114	14.6993
!!ccc!!bb####cccooooooccc4444bb22ccc22	chr21:47616015-47616268(-)$1	253	32	70	16.1042
======"""gggggggooooooggggggg]========	chr2:39570422-39570694(-)$1	272	181	219	17.5775
d===========[a[ddddllldddd]a==========	chr2:75937752-75938063(-)$1	311	162	200	15.1420
##ccc"""dddd[cccmmmmcccdddd4444ccc333b	chr5:176951951-176952255(-)$1	304	59	97	12.4880
iiiiiii$$$$$ddddoooooodddd333iiiiiiiii	chr20:52197889-52198177(-)$1	288	245	283	17.5236
e[ccc!!dddd[ddddoooooodddd22dddd22ccc3	chr3:48445743-48445997(-)$1	254	113	151	15.0883
ffffff"""bb[ddddoooooodddd]bb333ffffff	chr16:89971382-89971607(+)$1	225	153	191	14.7386
h[a"""ccc[a!!ddddllldddd22a]ccc333a]hh	chr22:45724172-45724375(+)$1	203	26	64	12.8861
Ieeeee"""ddddcccooooooccc4444dddd66666	chr14:24034223-24034442(-)$1	219	126	164	12.6683
F==========####cccmmmmccc==========eee	chr18:55997915-55998230(+)$1	315	42	80	14.1369
[dddd[a"""ddddbbccclllccc333bb]dddd333	chr7:77166718-77166990(+)$1	272	145	183	12.5348
iiiiiii!!bb[ddddoooooodddd]bb]iiiiiiii	chr14:35747709-35748024(+)$1	315	200	238	17.0140
:===========ddddoooooodddd22==========	chr7:97498159-97498438(-)$1	279	91	129	17.4671
cccbb[a[iiiiiiiiinnnnniiiiiiiii]a]bb]c	chr16:2570668-2570942(+)$1	274	183	221	12.2863
g[dddd[ggggggg[aooooooa]gggggggddddggg	chr6:32939471-32939692(+)$1	221	126	164	13.8764
iiii[bb[ccc[ddddllldddd]cccbb]iiiiiiii	chr7:26233095-26233349(-)$1	254	29	67	12.6935
fffff[bb[ccc!!bboooooobb22cccbbffffff]	chr9:116999160-116999402(+)$1	242	135	173	12.5557
========####ddddannnnna]dddd==========	chr7:150776678-150776973(-)$1	295	140	178	15.6110
hh=============[ccclllccc]============	chr5:78373202-78373526(+)$1	324	120	158	14.9963
cccdddd[bb!!ddddoooooodddd22bbdddd:bb[	chr8:94746331-94746611(-)$1	280	100	138	12.2224
eeeee####eeeee[aooooooa]eeeee333eeeee]	chr13:76382128-76382451(+)$1	323	108	146	14.3101
eeeeccc[dddd"""cccmmmmccc333ddddccc]ee	chr17:55183714-55183983(+)$1	269	201	239	12.0431
eeee[bb!!dddd[bboooooobb]dddd22bb4444e	chr11:71724217-71724493(-)$1	276	102	140	12.8700
eeeegggggggccccccnnnnnccc4444ccc]ggggg	chr20:62311915-62312171(+)$1	256	172	210	13.5584
iiii[bb[ccc[ddddllldddd]cccbb]iiiiiiii	chr7:26233149-26233383(-)$1	234	63	101	12.6935
b[bb[ccc[ccc"""cccmmmmccc333ccc]cccbbb	chr2:70056989-70057298(+)$1	309	215	253	12.1962
ggggggadddd!!cccooooooccc]dddd4444a]gg	chr2:101650027-101650296(-)$1	269	194	232	16.1392
ddd####dddd####cccmmmmccc4444dddd4444d	chr3:48670808-48671020(-)$1	212	87	125	12.5172
===####dddd!!ddddnnnnndddd]dddd=======	chr1:153617449-153617727(+)$1	278	77	115	14.3667
dddd!!eeeee"""cccnnnnnccc4444eeeeedddd	chr19:45853768-45854038(-)$1	270	153	191	12.0671
======"""bb!!ccclllccc22bb333=========	chr11:47236694-47236925(+)$1	231	83	121	14.5992
ee####dddd[eeeeeooooooeeeee]ddddeeeee6	chr1:2125078-2125387(-)$1	309	244	282	12.1593
ff[eeeee[dddd!!aooooooa22dddd]eeeee22f	chr20:60898731-60898950(-)$1	219	151	189	12.6876
####eeeee"""ddddnnnnndddd4444eeeee4444	chr22:21799973-21800290(+)$1	317	148	186	12.4430
ddddddd####eeeeeooooooeeeee22dddd22ddd	chr19:36302760-36303018(-)$1	258	84	122	11.8802

#otherMatches

#Seq PSSM
UGGAGCACUGUGGGGGCGUCGACUUCCUGGUGUGCAGC	chr14:24109001-24109216(+)$1	215	5	43	12.3185
CUCAUCUCGGCGUCUGAGGACAGAGGCUUUAAGGUGAG	chr6:170067911-170068279(-)$1	368	169	207	13.5271
CUCUGAGCGGCUGCUGGAGGUGCGGAAGCGGAUCAAUG	chr7:65551630-65551907(+)$1	277	124	162	16.4263
GUGGUGGCGGCUAUGGAGGAGACCGAGGUGGGGGCUAC	chr17:34171851-34172128(+)$1	277	112	150	15.5966
gcccccggagccgggcgggcgucccgagccgggcccgc	chr2:54197728-54198041(-)$1	313	152	190	13.1643
GAGGGGGAGCCGCGGCGGCGUGGCCGUGCGCGCGCCCU	chr11:85375448-85375725(-)$1	277	3	41	13.2296
CAGGAGGGGAGGUAGAAGAAGGUGCACCUCCACCCCCA	chr17:4575256-4575564(-)$1	308	181	219	11.5253
CUUUGUUGUUGUUGCCUCCAUUGGCAAUAAUCUAAGCA	chr9:100777544-100777790(+)$1	246	18	56	13.5391
UUUUUUUUAAGGUUCCCGAUAUGGAUGAUgaagaagga	chr9:131456123-131456396(+)$1	273	40	78	19.8996
UAUUAGCAUUUUUAGGUGAUUUUUGCAUUAAAUGUUGA	chr6:168343981-168344236(+)$1	255	204	242	14.9720
CCCGGCCCUGGGCAGCCCUGGAGCUCUAGCCGGGGCCG	chr14:23450739-23450992(-)$1	253	212	250	18.9197
GUGGUCAUCCCUGGUGGGUGCCACAUGGGCUGUGACUA	chr21:46900512-46900730(+)$1	218	42	80	13.7723
UACUGGUACGCGGAGCCGACGAGCUCCGGACAGCUAGU	chr2:27593044-27593302(-)$1	258	175	213	14.6212
GGAGGCAGCCCAAGCGCACUGAGCGCGUGGAGCAGUUC	chr20:61542662-61542954(-)$1	292	183	221	13.0280
CCAGCUGCUGACCGAGAACGAACUGCACCGGCAGCAGG	chr17:43227421-43227682(+)$1	261	146	184	15.0068
CAGCUCCAUGGGAUGGAAGACCCCACUCAGCCUGACUA	chr19:36297262-36297528(-)$1	266	141	179	14.9900
GACUCUGGACAUGGAUCUGGGAAUCUGUGCAAUAGCAG	chr6:138753465-138753718(-)$1	253	76	114	14.6993
GAUAGGUAAACUGCUGUUUUACCAGAAUGUUCACUGGA	chr21:47616015-47616268(-)$1	253	32	70	16.1042
UAUUUUUAUAGGGGUUAGGUUGAAUUUCUUAAAAUACA	chr2:39570422-39570694(-)$1	272	181	219	17.5775
UGAGCCUGGGGCGCCGAGGGAACUUCCGGUCCCGGGUU	chr2:75937752-75938063(-)$1	311	162	200	15.1420
AGGCCCAGUUGGCAGCAGAAGCUCUAAAGCAGGCAAAU	chr5:176951951-176952255(-)$1	304	59	97	12.4880
CUAUUCCCAUCUCCAGACAACGCUGGCCAggaaugggg	chr20:52197889-52198177(-)$1	288	245	283	17.5236
GAGCCACGGCCUGCUGUUGCUUCAGCCUGGCCUGGGCA	chr3:48445743-48445997(-)$1	254	113	151	15.0883
GCCCCCUCCUCAGGGACCCUCAUCCCAGACACGGGGGC	chr16:89971382-89971607(+)$1	225	153	191	14.7386
UGGGGGUGCGGGAGGCCUUUGGCCGGCGGCAGAACAAG	chr22:45724172-45724375(+)$1	203	26	64	12.8861
GAGGGCACUGGUUAGCUGUGUUGCUUGGAGACCCCAUC	chr14:24034223-24034442(-)$1	219	126	164	12.6683
CUUCUCUGAAAGCCUUGGGAGACCAUUUCAGAGGAAGU	chr18:55997915-55998230(+)$1	315	42	80	14.1369
AUGGAGCAAGUGGAGAUCCUGAGGAAAUUCAUCCAGAG	chr7:77166718-77166990(+)$1	272	145	183	12.5348
CAGGUCUUCGGAGAGGUAAGUCCCUCACUCAGACUUGU	chr14:35747709-35748024(+)$1	315	200	238	17.0140
CCAACUGCUGCUUUGGAUUUCACCGGUUGGCGGUAGUU	chr7:97498159-97498438(-)$1	279	91	129	17.4671
CGGGACUGCGGGGGCCGCAUCUUGGCUCCCGGAUUCAU	chr16:2570668-2570942(+)$1	274	183	221	12.2863
GAGUGCUGGAGGCUCUGGGGCGAUGGCUUCCGCACCUC	chr6:32939471-32939692(+)$1	221	126	164	13.8764
UAAUAGGUGGCAAUUUUGGAGGUAGCCCCGGUUAUGGA	chr7:26233095-26233349(-)$1	254	29	67	12.6935
GGGGAAGCCAGGGCCUCUGGUAAGUACCUGCUCCUCCA	chr9:116999160-116999402(+)$1	242	135	173	12.5557
CGGCUUCUGGAACAGGCGAAGAGCCCUGGGGAGCUGCU	chr7:150776678-150776973(-)$1	295	140	178	15.6110
GAGUGGGGAGGUUGUGAUUGGAGAUGGCAGCUUUCUCA	chr5:78373202-78373526(+)$1	324	120	158	14.9963
UCCCCUGAGGAGGACUUCAGGCAGUCACCCCAGGAGCA	chr8:94746331-94746611(-)$1	280	100	138	12.2224
UUUCACCCCUGGCCCCUGCAGUGAGGCUGACUUGAAGA	chr13:76382128-76382451(+)$1	323	108	146	14.3101
UGGCCACCACGGUUGGCAAGGUUGCAGGUCGUGUGUGU	chr17:55183714-55183983(+)$1	269	201	239	12.0431
GCAGAGCAAGCAGGCCGCUGGGGGACUGCGGGCAGAGC	chr11:71724217-71724493(-)$1	276	102	140	12.8700
CUGUGGCAUCUCCUUCCCUGAUGGAAGCCGGGCGGGUG	chr20:62311915-62312171(+)$1	256	172	210	13.5584
UAAUAGGUGGCAAUUUUGGAGGUAGCCCCGGUUAUGGA	chr7:26233149-26233383(-)$1	234	63	101	12.6935
UACUGUCACCCUGACUCGGAGACGGACGAGGAUGAGGA	chr2:70056989-70057298(+)$1	309	215	253	12.1962
AGAGCACCCCGCCUUCCAGAACGAAACGGGAAUUGCUG	chr2:101650027-101650296(-)$1	269	194	232	16.1392
CCACCAGUGGCGGACCUGGUUGCAGUAAGGCCAAGAUU	chr3:48670808-48671020(-)$1	212	87	125	12.5172
CCCUUUGGGCCAGGUCGGGGUAUGAUAGGUCGGGGAAG	chr1:153617449-153617727(+)$1	278	77	115	14.3667
GGGGAUGCUGCUCAGUCCCCCAGGCCCAUGCAGUCCCC	chr19:45853768-45854038(-)$1	270	153	191	12.0671
GAGCCCGAGGCCAAGAAGCUCUGUGCGAAGGGCUCCGG	chr11:47236694-47236925(+)$1	231	83	121	14.5992
GCCGUCUGUGGAGGGUGCCGCGGCCCUGCGCAGCUGCC	chr1:2125078-2125387(-)$1	309	244	282	12.1593
UGAGUGCUGACCCCAGGAUAUGCGAGGGUGGGCGCCAC	chr20:60898731-60898950(-)$1	219	151	189	12.6876
ACAACCACCUGAGCCUGCUGGAGGCGCCUGGUGGGCAG	chr22:21799973-21800290(+)$1	317	148	186	12.4430
GGGUCAGAAGGCCAGGAGCCUCCUUGGAGCUGAGCCCC	chr19:36302760-36303018(-)$1	258	84	122	11.8802

#DB
((..((((((.(((((......))))))))))).))).	chr14:24109001-24109216(+)$1	1	5	43	12.3185
(((((((.(((.((((....)))).)))...)))))))	chr6:170067911-170068279(-)$1	1	169	207	13.5271
(..(((.(.(((.(((......))).))).).)))..)	chr7:65551630-65551907(+)$1	1	124	162	16.4263
(((((..(.(((.(((......))).))).)..)))))	chr17:34171851-34172128(+)$1	1	112	150	15.5966
((((((((.(((.((((((...)))..))).)))))).	chr2:54197728-54198041(-)$1	1	152	190	13.1643
(((((.(.((((((((......)))))).)).).))))	chr11:85375448-85375725(-)$1	1	3	41	13.2296
..((.((((((((..(......)..)))))).)).)).	chr17:4575256-4575564(-)$1	1	181	219	11.5253
.(((((((((((((((......)))))))))...))))	chr9:100777544-100777790(+)$1	1	18	56	13.5391
(((((((((....(((......)))...))))))))))	chr9:131456123-131456396(+)$1	1	40	78	19.8996
(.(((((((((....((((...))))...)))))))))	chr6:168343981-168344236(+)$1	1	204	242	14.9720
.((((((((((..(((......)))....)))))))))	chr14:23450739-23450992(-)$1	1	212	250	18.9197
(((((((((((..((((...))))..)))..)))))))	chr21:46900512-46900730(+)$1	1	42	80	13.7723
(((((((...((((((......))))))....))))))	chr2:27593044-27593302(-)$1	1	175	213	14.6212
(.(((..(((((.((((.....)))).))).))....)	chr20:61542662-61542954(-)$1	1	183	221	13.0280
((.(((((((....((......))....))))))).))	chr17:43227421-43227682(+)$1	1	146	184	15.0068
((..((..((((.(((......)))))))....))...	chr19:36297262-36297528(-)$1	1	141	179	14.9900
(.((...(.(((((((......))))))))...)))))	chr6:138753465-138753718(-)$1	1	76	114	14.6993
..(((..((....(((......)))....))..)))..	chr21:47616015-47616268(-)$1	1	32	70	16.1042
((((((...(((((((......))))))).))))))))	chr2:39570422-39570694(-)$1	1	181	219	17.5775
)(((((((((((.(.((((...)))).)))))))))))	chr2:75937752-75938063(-)$1	1	162	200	15.1420
..(((...((((.(((....)))))))....)))...)	chr5:176951951-176952255(-)$1	1	59	97	12.4880
(((((((.....((((......))))...)))))))))	chr20:52197889-52198177(-)$1	1	245	283	17.5236
(.(((..((((.((((......))))..))))..))).	chr3:48445743-48445997(-)$1	1	113	151	15.0883
((((((...((.((((......)))).))...))))))	chr16:89971382-89971607(+)$1	1	153	191	14.7386
(.(...(((.(..((((...))))..).)))...).))	chr22:45724172-45724375(+)$1	1	26	64	12.8861
)(((((...(((((((......)))....)))).....	chr14:24034223-24034442(-)$1	1	126	164	12.6683
(((((((((((....(((....)))))))))))))(((	chr18:55997915-55998230(+)$1	1	42	80	14.1369
.((((.(...(((((((((...)))...)).))))...	chr7:77166718-77166990(+)$1	1	145	183	12.5348
(((((((..((.((((......)))).)).))))))))	chr14:35747709-35748024(+)$1	1	200	238	17.0140
.(((((((((((((((......))))..))))))))))	chr7:97498159-97498438(-)$1	1	91	129	17.4671
(((((.(.(((((((((.....))))))))).).)).)	chr16:2570668-2570942(+)$1	1	183	221	12.2863
(.((((.(((((((.(......).))))))))))))))	chr6:32939471-32939692(+)$1	1	126	164	13.8764
((((.((.(((.((((...)))).))))).))))))))	chr7:26233095-26233349(-)$1	1	29	67	12.6935
(((((.((.(((..((......))..))))))))))).	chr9:116999160-116999402(+)$1	1	135	173	12.5557
((((((((....(((((.....).))))))))))))))	chr7:150776678-150776973(-)$1	1	140	178	15.6110
))(((((((((((((.(((...))).))))))))))))	chr5:78373202-78373526(+)$1	1	120	158	14.9963
)))((((.((..((((......))))..)))))).((.	chr8:94746331-94746611(-)$1	1	100	138	12.2224
(((((....(((((.(......).)))))...))))).	chr13:76382128-76382451(+)$1	1	108	146	14.3101
(((((((.((((...(((....)))...))))))).))	chr17:55183714-55183983(+)$1	1	201	239	12.0431
((((.((..((((.((......)).))))..))....)	chr11:71724217-71724493(-)$1	1	102	140	12.8700
))))(((((((((((((.....)))....))).)))))	chr20:62311915-62312171(+)$1	1	172	210	13.5584
((((.((.(((.((((...)))).))))).))))))))	chr7:26233149-26233383(-)$1	1	63	101	12.6935
(.((.(((.(((...(((....)))...))).))))))	chr2:70056989-70057298(+)$1	1	215	253	12.1962
(((((((((((..(((......))).))))....).))	chr2:101650027-101650296(-)$1	1	194	232	16.1392
(((....((((....(((....)))....))))....)	chr3:48670808-48671020(-)$1	1	87	125	12.5172
(((....((((..((((.....)))).)))))))))))	chr1:153617449-153617727(+)$1	1	77	115	14.3667
((((..(((((...(((.....)))....)))))))))	chr19:45853768-45854038(-)$1	1	153	191	12.0671
((((((...((..(((...)))..))...)))))))))	chr11:47236694-47236925(+)$1	1	83	121	14.5992
((....((((.(((((......))))).))))))))).	chr1:2125078-2125387(-)$1	1	244	282	12.1593
((.(((((.((((..(......)..)))).)))))..)	chr20:60898731-60898950(-)$1	1	151	189	12.6876
....(((((...((((.....))))....)))))....	chr22:21799973-21800290(+)$1	1	148	186	12.4430
(((((((....(((((......)))))..))))..)))	chr19:36302760-36303018(-)$1	1	84	122	11.8802

#PSSM
e : 0.15	i : 0.13	d : 0.11	g : 0.09	= : 0.09	c : 0.07	: : 0.05	f : 0.05	! : 0.03	b : 0.03	# : 0.03	h : 0.03	I : 0.01	F : 0.01	[ : 0.01	
= : 0.17	e : 0.13	[ : 0.13	i : 0.11	d : 0.09	g : 0.07	f : 0.07	c : 0.05	! : 0.05	# : 0.03	b : 0.01	h : 0.01	
= : 0.19	i : 0.13	e : 0.11	c : 0.11	d : 0.09	g : 0.07	! : 0.05	b : 0.05	f : 0.05	[ : 0.03	# : 0.03	a : 0.01	
= : 0.17	i : 0.13	e : 0.13	c : 0.09	g : 0.09	d : 0.09	b : 0.07	# : 0.07	f : 0.05	! : 0.03	" : 0.01	
= : 0.17	c : 0.11	g : 0.11	i : 0.09	e : 0.09	[ : 0.09	f : 0.07	d : 0.07	# : 0.05	b : 0.03	" : 0.03	! : 0.01	
= : 0.17	i : 0.09	! : 0.09	b : 0.09	c : 0.07	[ : 0.07	g : 0.07	# : 0.07	f : 0.05	" : 0.05	e : 0.05	d : 0.05	
= : 0.13	" : 0.11	i : 0.09	! : 0.09	b : 0.09	c : 0.07	a : 0.07	g : 0.05	d : 0.05	# : 0.05	e : 0.05	f : 0.03	[ : 0.03	
[ : 0.13	= : 0.13	" : 0.13	d : 0.09	a : 0.05	c : 0.05	i : 0.05	b : 0.05	g : 0.05	! : 0.05	e : 0.05	f : 0.03	# : 0.03	$ : 0.01	
d : 0.15	[ : 0.13	= : 0.11	" : 0.11	c : 0.09	b : 0.07	i : 0.05	g : 0.05	# : 0.05	f : 0.03	! : 0.03	e : 0.03	$ : 0.01	
d : 0.21	c : 0.19	b : 0.09	= : 0.09	g : 0.09	# : 0.07	i : 0.05	" : 0.05	f : 0.03	e : 0.03	$ : 0.01	[ : 0.01	
d : 0.21	c : 0.19	# : 0.09	= : 0.09	g : 0.07	f : 0.05	i : 0.05	b : 0.05	[ : 0.03	e : 0.03	$ : 0.01	a : 0.01	! : 0.01	" : 0.01	
c : 0.13	# : 0.13	! : 0.13	d : 0.13	[ : 0.11	e : 0.07	f : 0.05	g : 0.05	= : 0.05	i : 0.03	" : 0.03	$ : 0.01	
d : 0.28	[ : 0.13	! : 0.13	# : 0.11	e : 0.07	f : 0.05	g : 0.05	" : 0.05	i : 0.03	= : 0.01	c : 0.01	
d : 0.30	c : 0.23	e : 0.07	# : 0.07	! : 0.05	g : 0.05	" : 0.05	f : 0.03	i : 0.03	a : 0.01	= : 0.01	[ : 0.01	
d : 0.28	c : 0.24	b : 0.07	e : 0.05	# : 0.05	[ : 0.05	f : 0.03	! : 0.03	i : 0.03	g : 0.03	" : 0.03	= : 0.01	
d : 0.32	c : 0.32	a : 0.07	b : 0.07	e : 0.05	f : 0.03	i : 0.03	g : 0.03	[ : 0.01	
o : 0.55	c : 0.17	d : 0.11	l : 0.05	m : 0.03	i : 0.01	a : 0.01	n : 0.01	
o : 0.55	c : 0.13	n : 0.13	l : 0.09	m : 0.03	d : 0.03	
o : 0.55	n : 0.13	m : 0.11	l : 0.09	c : 0.05	d : 0.03	
o : 0.55	l : 0.13	n : 0.13	m : 0.11	d : 0.03	c : 0.01	
o : 0.55	n : 0.13	d : 0.09	l : 0.09	m : 0.07	c : 0.03	
o : 0.55	d : 0.11	n : 0.11	l : 0.09	m : 0.07	c : 0.03	
c : 0.34	d : 0.30	a : 0.09	e : 0.05	b : 0.05	f : 0.03	i : 0.03	g : 0.03	2 : 0.01	
c : 0.32	d : 0.28	] : 0.09	e : 0.05	2 : 0.05	b : 0.05	f : 0.03	i : 0.03	g : 0.03	
c : 0.36	d : 0.24	2 : 0.09	e : 0.07	g : 0.05	] : 0.03	f : 0.03	i : 0.03	4 : 0.01	b : 0.01	
d : 0.28	4 : 0.15	e : 0.07	] : 0.07	2 : 0.07	3 : 0.07	c : 0.05	f : 0.05	g : 0.05	i : 0.03	= : 0.01	b : 0.01	
4 : 0.15	c : 0.13	3 : 0.13	d : 0.11	] : 0.09	e : 0.07	2 : 0.07	f : 0.05	g : 0.05	i : 0.03	= : 0.03	a : 0.01	
4 : 0.17	c : 0.13	3 : 0.13	d : 0.11	f : 0.07	2 : 0.07	b : 0.07	g : 0.05	i : 0.03	] : 0.03	= : 0.03	a : 0.01	e : 0.01	
4 : 0.17	c : 0.15	d : 0.15	= : 0.11	b : 0.11	3 : 0.07	g : 0.07	f : 0.03	i : 0.03	] : 0.01	e : 0.01	2 : 0.01	
= : 0.15	d : 0.15	] : 0.13	c : 0.09	b : 0.09	i : 0.07	3 : 0.05	4 : 0.05	f : 0.03	2 : 0.03	g : 0.03	e : 0.03	a : 0.01	
= : 0.17	d : 0.15	i : 0.13	3 : 0.07	4 : 0.07	] : 0.05	b : 0.05	c : 0.05	e : 0.05	f : 0.03	a : 0.03	2 : 0.03	g : 0.03	
= : 0.19	d : 0.17	i : 0.13	] : 0.09	3 : 0.09	c : 0.05	4 : 0.05	e : 0.05	f : 0.03	2 : 0.03	b : 0.03	g : 0.01	
= : 0.19	i : 0.13	d : 0.11	c : 0.09	e : 0.09	f : 0.05	2 : 0.05	b : 0.05	3 : 0.05	a : 0.03	g : 0.03	4 : 0.03	] : 0.01	
= : 0.19	i : 0.13	c : 0.11	e : 0.11	4 : 0.07	] : 0.05	b : 0.05	g : 0.05	d : 0.05	3 : 0.03	2 : 0.03	f : 0.03	6 : 0.01	
= : 0.19	c : 0.13	i : 0.13	e : 0.07	g : 0.07	4 : 0.07	f : 0.05	b : 0.05	d : 0.05	a : 0.03	] : 0.01	3 : 0.01	6 : 0.01	: : 0.01	2 : 0.01	
= : 0.17	i : 0.13	e : 0.09	c : 0.07	g : 0.07	b : 0.07	4 : 0.07	] : 0.07	f : 0.05	3 : 0.05	2 : 0.03	d : 0.03	6 : 0.01	
= : 0.17	i : 0.13	e : 0.11	g : 0.09	4 : 0.07	c : 0.05	2 : 0.05	b : 0.05	f : 0.05	d : 0.05	3 : 0.05	h : 0.01	6 : 0.01	] : 0.01	
= : 0.17	i : 0.13	e : 0.09	g : 0.09	] : 0.07	d : 0.07	c : 0.05	f : 0.05	3 : 0.05	4 : 0.03	b : 0.03	6 : 0.03	2 : 0.01	h : 0.01	[ : 0.01	

#score	735.380366152952
#seq	52
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_CDS_m1_run1.txt

#BEAR
ggga[bb!!ccc!!bbpppppppbb4444ccc22bb]a	chr11:618794-619008(-)$1	214	155	193	19.0279
ddd!!dddd[eeeeepppppppeeeee22dddd22ddd	chr4:39459954-39460161(-)$1	207	5	43	13.2997
bb[a[eeeee####cccnnnnnccc4444eeeee]a]b	chr10:64573524-64573735(-)$1	211	33	71	11.9910
ddddccceeeeeccca[ccclllccc]a]ccc333eee	chr20:62597553-62597756(-)$1	203	128	166	11.4537
dddddddd[a!!ddddpppppppdddd22adddd]ddd	chr1:4771981-4772204(+)$1	223	130	168	14.2709
ddd[ggggggg[bbcccooooooccc88888888bbgg	chr20:62597556-62597772(-)$1	216	52	90	11.4200
d!!cccbbbbccc[cccooooooccc]ccc]bb]bb]c	chr11:75115614-75115831(+)$1	217	58	96	12.1669
ggga[bb!!ccc!!bbpppppppbb4444ccc22bb]a	chr11:618785-618994(-)$1	209	141	179	19.0279
eeeeccc!!ddddxxxxxxxxxxxxxxxdddd22ccc:	chr17:26919458-26919700(-)$1	242	19	57	11.4218
!ccc$$$$$ffffffrrrrrrrrrffffff333ccc]f	chr11:9481795-9482048(-)$1	253	84	122	12.3182
dddd[bb[ddddddddpppppppdddd333dddd]bb]	chr11:62293169-62293424(-)$1	255	94	132	15.6309

#otherMatches

#Seq PSSM
GCACAGCACAGACCCCAGAGCCAGGAACCUCUCAGCCG	chr11:618794-619008(-)$1	214	155	193	19.0279
GCCUGGCAGUCUCCAGUAGGAGUGGAGCUCUGUGCGGC	chr4:39459954-39460161(-)$1	207	5	43	13.2997
UCAGUGCCAGAGAGACCUACAUGGUACAGCUGGCCCAG	chr10:64573524-64573735(-)$1	211	33	71	11.9910
UGUGGUCAGCAAGCCGGUGACAGUCAGCAGGCCCAUUG	chr20:62597553-62597756(-)$1	203	128	166	11.4537
cccggcUGUGGAGUUUUAGGAGUGGACAGCCAGCGCGG	chr1:4771981-4772204(+)$1	223	130	168	14.2709
GUACCUGUCACCAAACCCAUUACGGUAACAAAGCUUGU	chr20:62597556-62597772(-)$1	216	52	90	11.4200
UUUGAGACCCCAGCUGUGUGCUAACAACUGUGGUGUCC	chr11:75115614-75115831(+)$1	217	58	96	12.1669
GCACAGCACAGACCCCAGAGCCAGGAACCUCUCAGCCG	chr11:618785-618994(-)$1	209	141	179	19.0279
UUCAGGAAUCUCCGUCCCAUCUCUUAGAGGAGUCUCCA	chr17:26919458-26919700(-)$1	242	19	57	11.4218
UUGCUCUAGGGCUCUGCAUUCCCGAGAGCUGCUGUAUG	chr11:9481795-9482048(-)$1	253	84	122	12.3182
GGAUGUUACAGGCCCUAAGGUAGAGGGAGAUCUGAAAG	chr11:62293169-62293424(-)$1	255	94	132	15.6309

#DB
((((.((..(((..((.......))....)))..)).)	chr11:618794-619008(-)$1	1	155	193	19.0279
(((..((((.(((((.......)))))..))))..)))	chr4:39459954-39460161(-)$1	1	5	43	13.2997
((.(.(((((....(((.....)))....))))).).)	chr10:64573524-64573735(-)$1	1	33	71	11.9910
((((((((((((((((.(((...))).).)))...)))	chr20:62597553-62597756(-)$1	1	128	166	11.4537
((((((((.(..((((.......))))..))))).)))	chr1:4771981-4772204(+)$1	1	130	168	14.2709
(((.(((((((.(((((......)))........))))	chr20:62597556-62597772(-)$1	1	52	90	11.4200
(..((((((((((.(((......))).))).)).)).)	chr11:75115614-75115831(+)$1	1	58	96	12.1669
((((.((..(((..((.......))....)))..)).)	chr11:618785-618994(-)$1	1	141	179	19.0279
))))(((..((((...............))))..))).	chr17:26919458-26919700(-)$1	1	19	57	11.4218
.(((.....((((((.........))))))...))).)	chr11:9481795-9482048(-)$1	1	84	122	12.3182
((((.((.((((((((.......))))...)))).)).	chr11:62293169-62293424(-)$1	1	94	132	15.6309

#PSSM
d : 0.54	g : 0.18	b : 0.09	e : 0.09	! : 0.09	
d : 0.45	g : 0.18	b : 0.09	! : 0.09	e : 0.09	c : 0.09	
d : 0.45	g : 0.18	[ : 0.09	! : 0.09	e : 0.09	c : 0.09	
a : 0.27	d : 0.27	c : 0.18	! : 0.09	[ : 0.09	e : 0.09	
[ : 0.36	c : 0.27	! : 0.09	d : 0.09	g : 0.09	$ : 0.09	
b : 0.27	c : 0.27	d : 0.18	e : 0.09	g : 0.09	$ : 0.09	
b : 0.36	d : 0.18	c : 0.18	e : 0.09	g : 0.09	$ : 0.09	
! : 0.27	d : 0.18	e : 0.18	g : 0.09	b : 0.09	$ : 0.09	[ : 0.09	
! : 0.27	d : 0.18	e : 0.18	[ : 0.09	g : 0.09	b : 0.09	$ : 0.09	
c : 0.18	e : 0.18	d : 0.18	[ : 0.09	a : 0.09	g : 0.09	b : 0.09	f : 0.09	
c : 0.27	e : 0.18	d : 0.18	# : 0.09	! : 0.09	g : 0.09	f : 0.09	
c : 0.27	e : 0.18	d : 0.18	# : 0.09	! : 0.09	[ : 0.09	f : 0.09	
d : 0.27	! : 0.18	c : 0.18	e : 0.09	# : 0.09	b : 0.09	f : 0.09	
! : 0.18	d : 0.18	e : 0.09	# : 0.09	c : 0.09	b : 0.09	[ : 0.09	x : 0.09	f : 0.09	
c : 0.36	b : 0.18	d : 0.18	e : 0.09	x : 0.09	f : 0.09	
c : 0.27	b : 0.18	d : 0.18	p : 0.09	a : 0.09	x : 0.09	r : 0.09	
p : 0.45	c : 0.27	[ : 0.09	x : 0.09	r : 0.09	
p : 0.45	o : 0.18	n : 0.09	c : 0.09	x : 0.09	r : 0.09	
p : 0.45	o : 0.18	n : 0.09	c : 0.09	x : 0.09	r : 0.09	
p : 0.45	o : 0.18	n : 0.09	c : 0.09	x : 0.09	r : 0.09	
p : 0.45	o : 0.18	n : 0.09	l : 0.09	x : 0.09	r : 0.09	
p : 0.45	o : 0.18	n : 0.09	l : 0.09	x : 0.09	r : 0.09	
p : 0.36	o : 0.18	e : 0.09	c : 0.09	l : 0.09	x : 0.09	r : 0.09	
c : 0.36	b : 0.18	d : 0.18	e : 0.09	x : 0.09	r : 0.09	
c : 0.36	b : 0.18	d : 0.18	e : 0.09	x : 0.09	f : 0.09	
4 : 0.27	c : 0.27	d : 0.18	e : 0.09	x : 0.09	f : 0.09	
4 : 0.27	] : 0.18	d : 0.18	e : 0.09	8 : 0.09	x : 0.09	f : 0.09	
4 : 0.27	2 : 0.18	a : 0.09	8 : 0.09	c : 0.09	x : 0.09	f : 0.09	3 : 0.09	
4 : 0.27	2 : 0.18	] : 0.09	8 : 0.09	c : 0.09	d : 0.09	f : 0.09	3 : 0.09	
c : 0.36	d : 0.18	e : 0.09	a : 0.09	8 : 0.09	f : 0.09	3 : 0.09	
d : 0.36	c : 0.27	e : 0.09	8 : 0.09	] : 0.09	3 : 0.09	
d : 0.36	c : 0.27	e : 0.09	8 : 0.09	b : 0.09	3 : 0.09	
2 : 0.27	d : 0.27	3 : 0.18	e : 0.09	8 : 0.09	b : 0.09	
2 : 0.36	d : 0.18	e : 0.09	3 : 0.09	8 : 0.09	] : 0.09	c : 0.09	
b : 0.36	] : 0.27	c : 0.18	2 : 0.09	3 : 0.09	
b : 0.45	d : 0.18	c : 0.18	a : 0.09	e : 0.09	
] : 0.45	d : 0.18	e : 0.09	g : 0.09	c : 0.09	b : 0.09	
a : 0.18	d : 0.18	b : 0.09	e : 0.09	g : 0.09	c : 0.09	: : 0.09	f : 0.09	] : 0.09	

#score	152.02946643800917
#seq	11
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_CDS_m3_run2.txt

#BEAR
ddddggggggg[bboooooobb]ggggggg]dd	chr20:40065836-40066074(-)$1	238	200	233	13.4598
eee[==========oooooo==========]ee	chr2:61454158-61454450(-)$1	292	217	250	15.4332
hhhhh####eeeeeooooooeeeee333hhhhh	chr3:58116434-58116715(+)$1	281	215	248	12.0183
fffff"""ffffffooooooffffff4444fff	chr12:57000314-57000567(-)$1	253	27	60	13.0606
ccc[ccc!!ccc[ammmma]ccc22ccc]cccf	chr2:54856073-54856290(+)$1	217	15	48	10.8484
ee!!eeeee"""cccnnnnnccc22eeeee22e	chr2:54870163-54870366(+)$1	203	82	115	10.7287
a[ccc####bbrrrrrrrrrbb4444ccca]==	chr2:54882981-54883228(+)$1	247	64	97	10.5024
gg[ffffff"""bboooooobbffffffggggg	chr9:139341242-139341498(-)$1	256	28	61	12.8328
eee!!bb$$$$$cccoooooocccbb22eeeee	chr11:62288780-62289009(-)$1	229	62	95	12.0250
eeeee"""bb[cccooooooccc22bb]eeeee	chr7:91632325-91632586(+)$1	261	99	132	15.3338
ff####ccc[ddddoooooodddd]ccc333ff	chr3:58095655-58095912(+)$1	257	141	174	15.4651
eeeeeeeeee[cccooooooccc]eeeee]eee	chr16:11981454-11981709(-)$1	255	42	75	13.7482
e[eeeee[a!!cccooooooccc22a]eeeee]	chr1:39896437-39896681(+)$1	244	185	218	15.4790
ffccc"""ccc[bboooooobb]ccc4444ccc	chr20:31020660-31020887(+)$1	227	104	137	14.7896
bb$$$$$gggggggooooooggggggg4444bb	chr6:157099789-157100036(+)$1	247	161	194	13.0338
!!bb[eeeee!!bboooooobb22eeeee]bb]	chr17:41570096-41570391(+)$1	295	189	222	12.2240
ffff!!dddd[cccoooooocccdddd22ffff	chr17:26951150-26951356(-)$1	206	16	49	13.1769
eeeee[eeeeecccooooooccc22eeeee]ee	chr16:70296187-70296461(-)$1	274	201	234	14.2047
&&dddd[gggggggooooooggggggg333ddd	chr1:39851236-39851519(+)$1	283	204	237	12.7301
cccbb!!bb!!ddddoooooodddd22bb22bb	chr2:54041620-54041856(+)$1	236	119	152	11.4879
fff####ccc!!cccmmmmccc22ccc4444ff	chr2:15467874-15468094(-)$1	220	135	168	11.1332
iiiiiiiii!!cccccclllccc333ccc22ii	chr1:156713853-156714139(-)$1	286	233	266	12.1839
##dddd####ddddoooooodddd333dddd55	chr4:13600975-13601210(-)$1	235	24	57	12.8034
:ffffffgggggggooooooggggggg]fffff	chr11:120278347-120278619(+)$1	272	195	228	11.7641
fff[bb!!bbddddoooooodddd]bb]bbfff	chr6:56356924-56357153(-)$1	229	190	223	12.5600
gggggg####ddddooooooddddggggggg::	chr10:103558791-103559056(-)$1	265	209	242	13.1259
!!bb"""bb[a[bboooooobb]a]bb333bbg	chr2:15607711-15608018(-)$1	307	109	142	14.0973
h[ccc%%%%%%cccooooooccc333ccchhhh	chr6:56479063-56479329(-)$1	266	28	61	12.3991
f!!bb[ggggggg[annnnna]ggggggg333b	chr17:27009642-27009914(+)$1	272	98	131	10.3231
[==========[bboooooobb]==========	chr7:97823759-97823985(+)$1	226	181	214	15.1725
c[bb[ccc"""cccooooooccc]ccc]bbccc	chr9:711715-711973(+)$1	258	224	257	14.9029
======[bb[ddddoooooodddd22bb]====	chr1:11297965-11298202(-)$1	237	52	85	14.4281
eeeeccc[bb[a[aooooooaa]bbccc]eeee	chrX:153581428-153581666(-)$1	238	105	138	13.4722
dddddd[a[bbcccooooooccc]bba]dddd]	chr12:26749817-26750125(-)$1	308	152	185	13.3726
cccccc[ccc[cccoooooocccccc]ccc]cc	chr6:144875803-144876040(+)$1	237	146	179	15.0368
adddd[bb[a[cccooooooccc]a]bb]dddd	chr2:96966635-96966858(-)$1	223	81	114	14.1956
c####ccc[bb[bboooooobb]bb]ccc4444	chr6:56503980-56504209(-)$1	229	139	172	13.2893
eeee[ffffffabboooooobb22a]ffffff5	chr19:57325052-57325295(-)$1	243	188	221	11.6277
ee!!eeeee"""cccnnnnnccc22eeeee22e	chr2:54870063-54870316(+)$1	253	182	215	10.7287
cc[ddddcccddddoooooodddd]ccc]dddd	chr12:970139-970403(+)$1	264	48	81	13.4402
dddd!!bb!!ddddoooooodddd22bb22ddd	chr2:54873292-54873529(+)$1	237	111	144	13.7245
ff!!dddd[addddoooooodddd]a]dddd22	chr5:139905477-139905801(+)$1	324	38	71	12.8296
eee[ccc"""bb[aooooooabb333ccc]eee	chr4:85642461-85642740(-)$1	279	81	114	15.0362
dddd[bb[ffffffooooooffffff]bb]ddd	chr7:5372449-5372711(-)$1	262	94	127	11.3687
ffff"""iiiiiiiiimmmmiiiiiiiii22ff	chr21:34922681-34922960(+)$1	279	43	76	10.0132
ddd"""ccc!!cccooooooccc22ccc333dd	chr19:47424500-47424808(+)$1	308	77	110	16.7885
!ccc####a[ddddllldddda333ccc333cc	chr11:62300187-62300402(-)$1	215	118	151	11.9516
a####ccc[ddddoooooodddd]ccc22a]ee	chr1:39888301-39888523(+)$1	222	110	143	12.8253
:dddd[ccc!!cccooooooccc22cccdddd:	chr11:34167614-34167941(+)$1	327	269	302	13.4061
eeeee$$$$$ddddoooooodddd22eeeee:C	chr6:56342070-56342359(-)$1	289	117	150	11.9027
ggggggg[a[ccc[ammmmaccc]a]ggggggg	chr5:150501607-150501844(-)$1	237	145	178	11.3432
ggggggg[a[ddddoooooodddd]a]gggggg	chr22:36681647-36681897(-)$1	250	0	33	14.7150
ggggggg"""ccc[ccclllccc]cccgggggg	chr1:19446691-19446942(-)$1	251	172	205	11.2843
===="""ccc[ddddnnnnnddddccc333===	chr21:34947801-34948031(+)$1	230	20	53	12.0577

#otherMatches

#Seq PSSM
UCAUAUUAAGAAAGAAAUCCCUAUCUUGGUAGU	chr20:40065836-40066074(-)$1	238	200	233	13.4598
GCUCUUUUGGUUGAACAGUCUCGAUCAGAAAGG	chr2:61454158-61454450(-)$1	292	217	250	15.4332
UGCCUUCCUGCAGACAUUCAUCUGCCCCAGGCA	chr3:58116434-58116715(+)$1	281	215	248	12.0183
CAUUUUUCUUUCUGCUCUCACAGAAACAUUGAA	chr12:57000314-57000567(-)$1	253	27	60	13.0606
CCAGGUGAUCCGAGACCGCGUGGCCCACAUGGA	chr2:54856073-54856290(+)$1	217	15	48	10.8484
UGGCUUGACAAAAUCGAGAAGGUGAGUUAAAAC	chr2:54870163-54870366(+)$1	203	82	115	10.7287
UACAGAUCAAGGAAAAAUUACUGCAGUUGACGG	chr2:54882981-54883228(+)$1	247	64	97	10.5024
GAGUGUCUUCAGUGAGACCCCAGGGACGUUCGG	chr9:139341242-139341498(-)$1	256	28	61	12.8328
GAAGAUGCCCAAGGUGAAAAUGCCCAAAUUCAG	chr11:62288780-62289009(-)$1	229	62	95	12.0250
GUAAGCAAGAACAGUUGAUUUUGGAUCACUUAC	chr7:91632325-91632586(+)$1	261	99	132	15.3338
UGGAUUUUGACAUUAUUCACAAUGCCAAUGAUA	chr3:58095655-58095912(+)$1	257	141	174	15.4651
AAUAUCCUAAAAACUCUGAUGUUCUUAGGAAUA	chr16:11981454-11981709(-)$1	255	42	75	13.7482
UGAUGUGUGAGAUACAGUACUAUGACCCACAUA	chr1:39896437-39896681(+)$1	244	185	218	15.4790
CUUUGAAGACUACUAUGGACAGAAGUAAGGCAG	chr20:31020660-31020887(+)$1	227	104	137	14.7896
CCAUUAUCCGGGCUACAGCCGGCCcggcgcggg	chr6:157099789-157100036(+)$1	247	161	194	13.0338
UAGAUGGCGGGAUAAGCAUGUGGACCGCCCUCC	chr17:41570096-41570391(+)$1	295	189	222	12.2240
GGCAUGAGUGACCAGUUGUGUGGCAUUGCUGCC	chr17:26951150-26951356(-)$1	206	16	49	13.1769
AGCAGUGAAGAUGUGAGCCAACAGUUCUUCCUU	chr16:70296187-70296461(-)$1	274	201	234	14.2047
AAUUCGAUCUGACUUGGAGCAGUUAGACCACGA	chr1:39851236-39851519(+)$1	283	204	237	12.7301
GGUGACUGUAAAACUAAAGUAAGUUAGACCAUC	chr2:54041620-54041856(+)$1	236	119	152	11.4879
AGUGGAAAGCUUUGCAGAAGUAUUGCUGAGAAC	chr2:15467874-15468094(-)$1	220	135	168	11.1332
GGGUAUCCCACAGGAGCAGGGCUUUGCCUCAGG	chr1:156713853-156714139(-)$1	286	233	266	12.1839
AAGAGGACAGAAAGAGAGCACUUUACACCUCAU	chr4:13600975-13601210(-)$1	235	24	57	12.8034
AUUCAUUCUUUCAAAGAGUAUUGAGAGUAGUGA	chr11:120278347-120278619(+)$1	272	195	228	11.7641
AUAUGUUAUGGAUGUACUUUUAUCACAGGCUGU	chr6:56356924-56357153(-)$1	229	190	223	12.5600
AUUAGUGACAUUGCCCCCAUGCAAACUGAUGAA	chr10:103558791-103559056(-)$1	265	209	242	13.1259
AUAGACAUUGACAGUAUCUCCUAUGAAGAGCUU	chr2:15607711-15608018(-)$1	307	109	142	14.0973
UACCGCUCACAACUGUCAGAAGUCACUGGAAGA	chr6:56479063-56479329(-)$1	266	28	61	12.3991
UUAGAUGGCCUGGCCAAAAAGUUUGGGCUUACU	chr17:27009642-27009914(+)$1	272	98	131	10.3231
UGCUAGGAAAUUGAGUGUGGUCUGUUUUCUAGU	chr7:97823759-97823985(+)$1	226	181	214	15.1725
CUCAGGGAGAAUGGAGAGUGCCGGUCUGUGGCU	chr9:711715-711973(+)$1	258	224	257	14.9029
GAUGGGAUCAUGAGGAAAUGUUCAAAGGCUCCA	chr1:11297965-11298202(-)$1	237	52	85	14.4281
GUGCCCAAGGAGACGGGGGAGCACCUGGUGCAU	chrX:153581428-153581666(-)$1	238	105	138	13.4722
GGGAUGAGAGUGGCCCCUUAGCCUACCACAUCA	chr12:26749817-26750125(-)$1	308	152	185	13.3726
UGAGAAAAUAUGAGGCUCGACUCUAUAUUCUUC	chr6:144875803-144876040(+)$1	237	146	179	15.0368
GAGACAUACGGUGUGAAUGUGCAGUUUGAGUCU	chr2:96966635-96966858(-)$1	223	81	114	14.1956
GGUUAACUAUUGAGGUAAAGCUGGAAAGUGUAA	chr6:56503980-56504209(-)$1	229	139	172	13.2893
UCUGUGGGCAGCUCUUCAAUGACCGCCUGUCCC	chr19:57325052-57325295(-)$1	243	188	221	11.6277
UGGCUUGACAAAAUCGAGAAGGUGAGUUAAAAC	chr2:54870063-54870316(+)$1	253	182	215	10.7287
GGGUAUGUCUGUGAAGGUGAUCACAAGACCAUG	chr12:970139-970403(+)$1	264	48	81	13.4402
CUGACAGCAGCAGCCUCAGCGCUGAGGCCAUCA	chr2:54873292-54873529(+)$1	237	111	144	13.7245
UUCUGUCAGAAUUUGUUUUGAGAUCUGUGACUC	chr5:139905477-139905801(+)$1	324	38	71	12.8296
AGCAGCUACAAGACCAGAUUGCUGAGGGCAGCU	chr4:85642461-85642740(-)$1	279	81	114	15.0362
GGCUGCUGCGGCCCAAGAAGGGGCUGGGGGAGC	chr7:5372449-5372711(-)$1	262	94	127	11.3687
GCCCCCUGUGACUCCAGUGCUGGAGUUACCUGG	chr21:34922681-34922960(+)$1	279	43	76	10.0132
UAUUCAGCUUGUAGCACUCACUGAUGGCGCUGU	chr19:47424500-47424808(+)$1	308	77	110	16.7885
ACUUAAAGGCUCCAGAGUGGACAUAGAGACACC	chr11:62300187-62300402(-)$1	215	118	151	11.9516
GAAUUGCACAGCUACAGGAAGCUUUGUUGCAUU	chr1:39888301-39888523(+)$1	222	110	143	12.8253
UGUGAGCUCAACCUGGCUAAAGGCAGAGUCACU	chr11:34167614-34167941(+)$1	327	269	302	13.4061
AGCCACCACUAUGGGCGACACCGUUUUGGCUAU	chr6:56342070-56342359(-)$1	289	117	150	11.9027
UGGCACCAGGGGGUCUAGUGUCUGCGGGUGCCA	chr5:150501607-150501844(-)$1	237	145	178	11.3432
GGGGGCAGAGUUGGGGGGGACCAGGUGUGUCCC	chr22:36681647-36681897(-)$1	250	0	33	14.7150
AGGAAACCCUGAUCCAGUUCCUGCGUUGUUUCC	chr1:19446691-19446942(-)$1	251	172	205	11.2843
GAGGUUCAGACUCCUACAGAGGGAUCUUUGUUU	chr21:34947801-34948031(+)$1	230	20	53	12.0577

#DB
(((((((((((.((......)).))))))).))	chr20:40065836-40066074(-)$1	1	200	233	13.4598
(((.((((((((((......)))))))))).))	chr2:61454158-61454450(-)$1	1	217	250	15.4332
(((((....(((((......)))))...)))))	chr3:58116434-58116715(+)$1	1	215	248	12.0183
(((((...((((((......))))))....)))	chr12:57000314-57000567(-)$1	1	27	60	13.0606
(((.(((..(((.(....).)))..))).)))(	chr2:54856073-54856290(+)$1	1	15	48	10.8484
((..(((((...(((.....)))..)))))..)	chr2:54870163-54870366(+)$1	1	82	115	10.7287
(.(((....((.........))....)))).))	chr2:54882981-54883228(+)$1	1	64	97	10.5024
((.((((((...((......)))))))))))))	chr9:139341242-139341498(-)$1	1	28	61	12.8328
(((..((.....(((......)))))..)))))	chr11:62288780-62289009(-)$1	1	62	95	12.0250
(((((...((.(((......)))..)).)))))	chr7:91632325-91632586(+)$1	1	99	132	15.3338
((....(((.((((......)))).)))...))	chr3:58095655-58095912(+)$1	1	141	174	15.4651
((((((((((.(((......))).))))).)))	chr16:11981454-11981709(-)$1	1	42	75	13.7482
(.(((((.(..(((......)))..).))))).	chr1:39896437-39896681(+)$1	1	185	218	15.4790
(((((...(((.((......)).)))....)))	chr20:31020660-31020887(+)$1	1	104	137	14.7896
((.....(((((((......)))))))....))	chr6:157099789-157100036(+)$1	1	161	194	13.0338
..((.(((((..((......))..))))).)).	chr17:41570096-41570391(+)$1	1	189	222	12.2240
((((..((((.(((......)))))))..))))	chr17:26951150-26951356(-)$1	1	16	49	13.1769
(((((.((((((((......)))..))))).))	chr16:70296187-70296461(-)$1	1	201	234	14.2047
..((((.(((((((......)))))))...)))	chr1:39851236-39851519(+)$1	1	204	237	12.7301
)))((..((..((((......))))..))..))	chr2:54041620-54041856(+)$1	1	119	152	11.4879
(((....(((..(((....)))..)))....))	chr2:15467874-15468094(-)$1	1	135	168	11.1332
(((((((((..((((((...)))...)))..))	chr1:156713853-156714139(-)$1	1	233	266	12.1839
..((((....((((......))))...))))..	chr4:13600975-13601210(-)$1	1	24	57	12.8034
.(((((((((((((......))))))).)))))	chr11:120278347-120278619(+)$1	1	195	228	11.7641
(((.((..((((((......)))).)).)))))	chr6:56356924-56357153(-)$1	1	190	223	12.5600
((((((....((((......)))))))))))..	chr10:103558791-103559056(-)$1	1	209	242	13.1259
..((...((.(.((......)).).))...)))	chr2:15607711-15608018(-)$1	1	109	142	14.0973
(.(((......(((......)))...)))))))	chr6:56479063-56479329(-)$1	1	28	61	12.3991
(..((.(((((((.(.....).)))))))...)	chr17:27009642-27009914(+)$1	1	98	131	10.3231
.((((((((((.((......)).))))))))))	chr7:97823759-97823985(+)$1	1	181	214	15.1725
(.((.(((...(((......))).))).)))))	chr9:711715-711973(+)$1	1	224	257	14.9029
((((((.((.((((......))))..)).))))	chr1:11297965-11298202(-)$1	1	52	85	14.4281
(((((((.((.(.(......)).))))).))))	chrX:153581428-153581666(-)$1	1	105	138	13.4722
((((((.(.(((((......))).))).)))).	chr12:26749817-26750125(-)$1	1	152	185	13.3726
((((((.(((.(((......)))))).))).))	chr6:144875803-144876040(+)$1	1	146	179	15.0368
)((((.((.(.(((......))).).)).))))	chr2:96966635-96966858(-)$1	1	81	114	14.1956
(....(((.((.((......)).)).)))....	chr6:56503980-56504209(-)$1	1	139	172	13.2893
((((.(((((((((......))..).)))))).	chr19:57325052-57325295(-)$1	1	188	221	11.6277
((..(((((...(((.....)))..)))))..)	chr2:54870063-54870316(+)$1	1	182	215	10.7287
((.(((((((((((......)))).))).))))	chr12:970139-970403(+)$1	1	48	81	13.4402
((((..((..((((......))))..))..)))	chr2:54873292-54873529(+)$1	1	111	144	13.7245
((..((((.(((((......)))).).))))..	chr5:139905477-139905801(+)$1	1	38	71	12.8296
(((.(((...((.(......)))...))).)))	chr4:85642461-85642740(-)$1	1	81	114	15.0362
((((.((.((((((......)))))).)).)))	chr7:5372449-5372711(-)$1	1	94	127	11.3687
((((...(((((((((....)))))))))..))	chr21:34922681-34922960(+)$1	1	43	76	10.0132
(((...(((..(((......)))..)))...))	chr19:47424500-47424808(+)$1	1	77	110	16.7885
.(((....(.((((...)))))...)))...))	chr11:62300187-62300402(-)$1	1	118	151	11.9516
(....(((.((((......)))).)))..).))	chr1:39888301-39888523(+)$1	1	110	143	12.8253
.((((.(((..(((......)))..))))))).	chr11:34167614-34167941(+)$1	1	269	302	13.4061
(((((.....((((......))))..))))).(	chr6:56342070-56342359(-)$1	1	117	150	11.9027
(((((((.(.(((.(....)))).).)))))))	chr5:150501607-150501844(-)$1	1	145	178	11.3432
(((((((.(.((((......)))).).))))))	chr22:36681647-36681897(-)$1	1	0	33	14.7150
(((((((...(((.(((...))).)))))))))	chr1:19446691-19446942(-)$1	1	172	205	11.2843
((((...(((.((((.....)))))))...)))	chr21:34947801-34948031(+)$1	1	20	53	12.0577

#PSSM
e : 0.22	f : 0.16	c : 0.11	d : 0.09	g : 0.09	a : 0.05	! : 0.05	h : 0.03	: : 0.03	= : 0.03	b : 0.01	& : 0.01	i : 0.01	# : 0.01	[ : 0.01	
e : 0.20	f : 0.16	d : 0.12	c : 0.09	g : 0.09	[ : 0.07	! : 0.05	# : 0.05	= : 0.05	h : 0.01	b : 0.01	& : 0.01	i : 0.01	
e : 0.18	d : 0.16	c : 0.12	f : 0.11	! : 0.07	g : 0.07	# : 0.05	b : 0.05	= : 0.05	[ : 0.03	h : 0.01	$ : 0.01	i : 0.01	
d : 0.16	e : 0.12	f : 0.09	c : 0.09	b : 0.09	[ : 0.07	! : 0.07	# : 0.07	g : 0.07	= : 0.05	h : 0.01	$ : 0.01	i : 0.01	" : 0.01	
c : 0.12	e : 0.12	d : 0.12	g : 0.09	# : 0.09	[ : 0.07	" : 0.07	= : 0.05	f : 0.05	! : 0.05	b : 0.05	h : 0.01	$ : 0.01	i : 0.01	
" : 0.12	c : 0.12	g : 0.09	# : 0.09	e : 0.09	d : 0.09	[ : 0.07	= : 0.05	f : 0.05	b : 0.05	! : 0.05	$ : 0.03	i : 0.01	% : 0.01	
c : 0.16	# : 0.11	" : 0.11	e : 0.11	g : 0.09	b : 0.07	[ : 0.07	f : 0.05	d : 0.05	= : 0.03	$ : 0.03	! : 0.03	i : 0.01	% : 0.01	
c : 0.18	g : 0.09	# : 0.09	" : 0.09	e : 0.09	[ : 0.09	b : 0.09	= : 0.03	! : 0.03	f : 0.03	$ : 0.03	d : 0.03	i : 0.03	% : 0.01	a : 0.01	
c : 0.14	b : 0.11	g : 0.09	e : 0.09	[ : 0.09	# : 0.07	f : 0.07	a : 0.07	" : 0.05	= : 0.03	! : 0.03	$ : 0.03	i : 0.03	d : 0.01	% : 0.01	
c : 0.11	" : 0.11	b : 0.11	[ : 0.11	! : 0.11	g : 0.09	e : 0.07	f : 0.05	= : 0.03	$ : 0.03	d : 0.03	# : 0.03	a : 0.03	% : 0.01	i : 0.01	
d : 0.22	[ : 0.12	! : 0.12	g : 0.09	c : 0.07	" : 0.07	b : 0.07	f : 0.05	= : 0.03	e : 0.03	$ : 0.01	a : 0.01	% : 0.01	i : 0.01	
c : 0.29	d : 0.25	[ : 0.09	g : 0.07	" : 0.05	f : 0.03	! : 0.03	a : 0.03	= : 0.01	e : 0.01	r : 0.01	$ : 0.01	b : 0.01	i : 0.01	
c : 0.35	d : 0.25	b : 0.14	g : 0.07	[ : 0.05	f : 0.03	= : 0.01	e : 0.01	r : 0.01	i : 0.01	
c : 0.31	d : 0.24	b : 0.14	a : 0.05	g : 0.05	[ : 0.05	f : 0.03	= : 0.01	e : 0.01	r : 0.01	i : 0.01	o : 0.01	
o : 0.74	c : 0.11	d : 0.03	a : 0.03	m : 0.01	r : 0.01	i : 0.01	l : 0.01	
o : 0.77	n : 0.07	m : 0.05	c : 0.03	r : 0.01	i : 0.01	l : 0.01	
o : 0.77	m : 0.07	n : 0.07	c : 0.03	r : 0.01	l : 0.01	
o : 0.77	m : 0.07	n : 0.07	l : 0.03	r : 0.01	d : 0.01	
o : 0.77	n : 0.07	m : 0.05	l : 0.03	a : 0.01	r : 0.01	d : 0.01	
o : 0.75	n : 0.07	l : 0.03	d : 0.03	] : 0.01	r : 0.01	c : 0.01	m : 0.01	a : 0.01	
c : 0.35	d : 0.24	b : 0.16	g : 0.05	a : 0.05	f : 0.03	o : 0.03	= : 0.01	e : 0.01	i : 0.01	
c : 0.37	d : 0.24	b : 0.18	g : 0.05	f : 0.03	a : 0.03	= : 0.01	e : 0.01	] : 0.01	i : 0.01	
c : 0.35	d : 0.24	] : 0.11	g : 0.07	f : 0.05	2 : 0.05	= : 0.01	e : 0.01	4 : 0.01	b : 0.01	i : 0.01	3 : 0.01	
d : 0.24	2 : 0.20	] : 0.12	g : 0.09	3 : 0.07	f : 0.05	c : 0.05	= : 0.03	b : 0.03	e : 0.01	4 : 0.01	a : 0.01	i : 0.01	
2 : 0.20	c : 0.12	g : 0.11	] : 0.11	3 : 0.09	b : 0.07	e : 0.05	f : 0.05	a : 0.05	= : 0.03	d : 0.03	4 : 0.01	i : 0.01	
c : 0.25	g : 0.11	3 : 0.09	e : 0.09	b : 0.09	2 : 0.07	] : 0.07	f : 0.05	a : 0.05	= : 0.03	4 : 0.01	d : 0.01	i : 0.01	
c : 0.31	g : 0.12	e : 0.11	b : 0.11	] : 0.09	= : 0.03	3 : 0.03	4 : 0.03	f : 0.03	2 : 0.03	d : 0.01	a : 0.01	i : 0.01	
c : 0.24	e : 0.12	g : 0.11	] : 0.09	b : 0.09	3 : 0.07	4 : 0.07	2 : 0.05	= : 0.03	f : 0.03	d : 0.03	i : 0.01	
e : 0.16	g : 0.12	c : 0.11	3 : 0.11	] : 0.09	4 : 0.07	b : 0.07	d : 0.07	2 : 0.05	= : 0.03	f : 0.03	h : 0.01	i : 0.01	
e : 0.14	3 : 0.12	g : 0.11	d : 0.11	4 : 0.09	] : 0.07	2 : 0.07	= : 0.05	f : 0.05	h : 0.03	c : 0.03	a : 0.03	b : 0.03	
d : 0.16	e : 0.12	] : 0.11	f : 0.09	2 : 0.09	g : 0.09	3 : 0.07	c : 0.05	4 : 0.05	= : 0.05	h : 0.03	b : 0.03	
d : 0.16	e : 0.16	f : 0.14	c : 0.09	= : 0.07	g : 0.07	b : 0.07	2 : 0.05	h : 0.03	: : 0.03	i : 0.01	5 : 0.01	3 : 0.01	4 : 0.01	
e : 0.18	f : 0.14	d : 0.12	g : 0.09	= : 0.07	c : 0.07	] : 0.05	b : 0.05	h : 0.03	5 : 0.03	: : 0.03	i : 0.01	4 : 0.01	2 : 0.01	C : 0.01	

#score	701.8882477818016
#seq	54
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_UTR_m1_run1.txt

#BEAR
dddd[ccc!!eeeeeooooooeeeee22ccc]ddd	chr3:184102300-184102580(+)$1	280	138	173	12.2453
======[abb[ddddoooooodddd]bb]a]====	chr20:61569041-61569320(-)$1	279	187	222	15.2982
ccc####bb[a!!bboooooobb]abb4444ccc2	chr17:39976545-39976767(+)$1	222	71	106	15.2696
dd==========[ddddllldddd]==========	chr12:26985900-26986142(-)$1	242	153	188	13.1076
iiiiiibb"""ddddoooooodddd333bb]iiii	chr3:156867969-156868252(-)$1	283	25	60	15.4842
ddddeeeee####bboooooobb333eeeee]ddd	chr12:26985531-26985817(-)$1	286	1	36	13.4642
&&&&&ccc[bb[cccooooooccc]bbcccbbeee	chr17:27419858-27420115(-)$1	257	120	155	12.2818
ddiiiiiiiii!!bboooooobb]iiiiiiiii]d	chr2:61408354-61408567(+)$1	213	90	125	15.2441
ggggccc!!ccc[bblllbb]ccc333ccc]gggg	chr7:148513673-148513942(-)$1	269	174	209	11.9170
cc[a[a[eeeee[cccnnnnnccc]eeeee]a]ac	chr11:62494680-62494948(-)$1	268	189	224	11.6869
d[ffffff"""ccc[ccclllccc]ccc4444fff	chr7:73009959-73010186(-)$1	227	34	69	12.3256
ee"""bb!!ffffffooooooffffff22bbeeee	chr2:63053145-63053373(+)$1	228	63	98	12.1057
gggg[ccc"""fffffflllffffff333cccggg	chr16:88785857-88786134(-)$1	277	238	273	11.6197
####bb!!gggggggooooooggggggg22bb333	chr9:100777598-100777866(+)$1	268	22	57	13.8585
=========bbddddoooooodddd]bb22=====	chr17:73900521-73900841(-)$1	320	255	290	15.5409
e[a!!ccc[bb"""cccmmmmccc]bbccc22a]e	chr14:39646697-39646959(+)$1	262	114	149	11.5273
d!!dddd"""ccc[cccmmmmcccccc333dddd9	chr8:27467982-27468196(-)$1	214	155	190	10.7436
gggggbb!!cccrrrrrrrrrccc22bb22ggggg	chr1:1333512-1333760(-)$1	248	131	166	11.5347
hhhheeeeebb[cccoooooocccbb]eeeee]hh	chr14:39748439-39748646(+)$1	207	35	70	12.8779
:dddd!!ccc!!cccooooooccc]ccc333dddd	chr16:58633254-58633515(-)$1	261	177	212	14.9736
ggggggg[dddd[cccnnnnnccc333dddd]ggg	chr12:104327636-104327887(+)$1	251	77	112	12.6799
ccc####bb[a!!bboooooobb]abb4444ccc2	chr17:39976453-39976719(+)$1	266	163	198	15.2696
!ccc"""bbbb[cccooooooccc22bb]bb333c	chr14:102549473-102549730(-)$1	257	209	244	15.5538
:ggggggg[bb[cccooooooccc]bb22gggggg	chr8:117861083-117861299(-)$1	216	112	147	16.1428
i!!ccc[bb[a[cccoooooocccabb]ccciiii	chr17:79966902-79967168(+)$1	266	117	152	16.3227
!!eeeee"""ccc[aooooooa]ccc333eeeee2	chr16:4910768-4911182(+)$1	414	302	337	15.2323
b!!ccc!!ffffffaooooooa]ffffff22ccc2	chr17:79866651-79866885(-)$1	234	103	138	12.8659
FFggggggg"""cccooooooccc333ggggggg:	chr9:71766490-71766740(+)$1	250	6	41	16.0442
[===============nnnnn==============	chr1:1560278-1560576(+)$1	298	28	63	14.4649
ddgggggggcccddddmmmmdddd]ccc333gggg	chr1:160232053-160232353(-)$1	300	203	238	11.0937
[iiiiiiiii####cccmmmmccc22iiiiiiiii	chr3:79067710-79067982(-)$1	272	49	84	13.3313
gggggg####bb[cccnnnnncccbb333gggggg	chr2:61411748-61411991(+)$1	243	180	215	14.0387
ccffffff[bb!!bboooooobb333bb]ffffff	chr2:74750006-74750245(-)$1	239	165	200	14.4034
fff[dddd"""ddddoooooodddddddd333fff	chr3:184042644-184042909(+)$1	265	96	131	13.4677
cggggggg####cccooooooccc666666ggggg	chr16:69660242-69660532(+)$1	290	90	125	15.2680
###eeeee"""ddddoooooodddd333eeeeeee	chr17:74733061-74733313(-)$1	252	51	86	14.4297
cc"""==========oooooo==========ccc:	chr12:111908263-111908623(-)$1	360	244	279	15.5308
=========####cccnnnnnccc==========2	chr16:89858235-89858501(-)$1	266	22	57	15.5238
eedddd[dddd[cccooooooccc]dddd]dddd]	chr17:27448571-27448838(-)$1	267	128	163	13.1116
::==========[cccnnnnnccc22=========	chr6:163956026-163956259(+)$1	233	110	145	13.4070
:ggggggg[bb!!bboooooobb22bb]ggggggg	chr14:91976395-91976728(-)$1	333	74	109	14.5014
fffff"""bb!!cccooooooccc22bb22fffff	chr19:5641709-5642024(+)$1	315	3	38	15.7341
gffffff$$$$$cccooooooccc4444ffffff]	chr4:184201867-184202128(+)$1	261	191	226	15.3229
:ccceeeee[eeeeeooooooeeeeeeeeee]ccc	chr3:142761862-142762190(+)$1	328	231	266	11.0442
ffffff[bb[a[cccooooooccc]a]bb]fffff	chr10:7791237-7791475(+)$1	238	154	189	14.9934
###==========[aooooooa]============	chr17:73663341-73663658(+)$1	317	107	142	17.0335
========="""ddddmmmmdddd]==========	chr2:128180688-128180917(+)$1	229	114	149	13.4470
:bb!!dddd"""cccooooooccc333ddddbb:f	chr9:117066800-117067053(+)$1	253	107	142	13.1592
c[bb####bb"""cccnnnnnccc]bb333bb]cc	chr9:139700882-139701116(+)$1	234	82	117	13.7632
fffff[a[eeeee[aooooooa]eeeee]a]ffff	chr6:56373330-56373646(-)$1	316	179	214	12.6148

#otherMatches

#Seq PSSM
GUGGCUGCCCUGCCCUACUGUGGGCAUAGCGCCCG	chr3:184102300-184102580(+)$1	280	138	173	12.2453
CCUGUCGUUUGCGUGAGGCCGCACGGGGUGGGGCG	chr20:61569041-61569320(-)$1	279	187	222	15.2982
GGCCAUCUGAGACCUGCAAUGAGACCACCAAGCUU	chr17:39976545-39976767(+)$1	222	71	106	15.2696
UGCCGGGGAGGCGGCGGCGGCUGCGGCUUCUCUGG	chr12:26985900-26986142(-)$1	242	153	188	13.1076
AAGCUUCAGAAGAACUGGUUUGUUUACAUGCAAGC	chr3:156867969-156868252(-)$1	283	25	60	15.4842
AGUCCCGCGAUCCGAUCCGCUUCUGCCGCGGCGGC	chr12:26985531-26985817(-)$1	286	1	36	13.4642
GAGAAGCGGCUGCGGAAGGACCUGAAGCGCACCAA	chr17:27419858-27420115(-)$1	257	120	155	12.2818
CUCAUUUUAGGCAUCGUUAAAGAAUCUGGAGUGAA	chr2:61408354-61408567(+)$1	213	90	125	15.2441
UGUCAUGAAGCUCCUUAGAGAAGUCAACAUAGAUA	chr7:148513673-148513942(-)$1	269	174	209	11.9170
GCUCGCUCGCGCGGGCUCAGUGCUGGCGCGUGAgg	chr11:62494680-62494948(-)$1	268	189	224	11.6869
GUGCUGGGACCAGGGGGCCAUGCCGCCUUACCCCC	chr7:73009959-73010186(-)$1	227	34	69	12.3256
UUUAAUCUUCCAGGAAUCCCCUUCUGGUCGAAGGA	chr2:63053145-63053373(+)$1	228	63	98	12.1057
GUGGUGCUGGAGGCCCUCCCAGGGCUCGGAGCCCA	chr16:88785857-88786134(-)$1	277	238	273	11.6197
AAAGUCAAUUUUUGUUACUGUACagaggaggaaga	chr9:100777598-100777866(+)$1	268	22	57	13.8585
GCCCGGGGAACUCGGGACCCGCCGGCGUUUUCCCC	chr17:73900521-73900841(-)$1	320	255	290	15.5409
UCAGUUGUAGCUACCUCCAAAGAGCGCACACGUAG	chr14:39646697-39646959(+)$1	262	114	149	11.5273
GAGUGGGCAGGUCCUGGGGGACCAGACGGUCUCAG	chr8:27467982-27468196(-)$1	214	155	190	10.7436
CAGCUGAGAGACAAAAAGUGAGUCAGUCAGAGCUG	chr1:1333512-1333760(-)$1	248	131	166	11.5347
UAAAUGAAUUGAUUUACUUGAGAGCGUAUUUGUUU	chr14:39748439-39748646(+)$1	207	35	70	12.8779
AUUACAAAGAAAGCAUUAACCUGCCUCUGAGGUGA	chr16:58633254-58633515(-)$1	261	177	212	14.9736
GGUUCUUGUCUUGCAUUUAGUGUGAUAAGGAGAAG	chr12:104327636-104327887(+)$1	251	77	112	12.6799
GGCCAUCUGAGACCUGCAAUGAGACCACCAAGCUU	chr17:39976453-39976719(+)$1	266	163	198	15.2696
AUUUGAGGGGAAGACUUUAGUGUCAGUCACCAAAG	chr14:102549473-102549730(-)$1	257	209	244	15.5538
CAGGUAUUGCCGCUGUUGUCUCAGAGGAAAAUGCU	chr8:117861083-117861299(-)$1	216	112	147	16.1428
GACGGUGGACGACGUGAGAAGACGCUUGGCCCAGC	chr17:79966902-79967168(+)$1	266	117	152	16.3227
CCCCUGGAGAAGCGCGUUAAGGAGCUGGCUCAGGU	chr16:4910768-4911182(+)$1	414	302	337	15.2323
AAAUACAACUGUGACUUCUGUGUUCACGGCAGUGA	chr17:79866651-79866885(-)$1	234	103	138	12.8659
UGCAUUUCCCAAAAUCUUACCAUUGCAGGGAAUGA	chr9:71766490-71766740(+)$1	250	6	41	16.0442
CAGGGCUGGGCUGUGGCUGGCUCAUGGCUCAGCCU	chr1:1560278-1560576(+)$1	298	28	63	14.4649
AGACGGGAAGCGGGCUGCUGAGCCUCGCCGAUUCC	chr1:160232053-160232353(-)$1	300	203	238	11.0937
GGAGGCAGGAAACGGCACUACUGCGCUUCUGCCUC	chr3:79067710-79067982(-)$1	272	49	84	13.3313
CCUGCAGGUAUGAGCUCUGUUGGCCAAAAUGUAGG	chr2:61411748-61411991(+)$1	243	180	215	14.0387
ACCCAGGGUGUGUGAGGAGAAUCUGAGCUCCCUGG	chr2:74750006-74750245(-)$1	239	165	200	14.4034
AUCAAGUUUAUUGGAGAGUUGUUCAAACUGAAGAU	chr3:184042644-184042909(+)$1	265	96	131	13.4677
AGUUACAGUUACCUCCAUCUAGAGAAACAUCUGUA	chr16:69660242-69660532(+)$1	290	90	125	15.2680
CCGGGCCGCCACUCAGAGCUAUGAGCUACGGCCGC	chr17:74733061-74733313(-)$1	252	51	86	14.4297
CCACAUUAUCAGUCUCAGGUAAGGCUGGUAAGGCC	chr12:111908263-111908623(-)$1	360	244	279	15.5308
CAGCUCUUUGUGAUGCUGAGUGCAGAGGAGUUGGU	chr16:89858235-89858501(-)$1	266	22	57	15.5238
AUCUGGCCUCACUGGUGUACCUCAAUGAGUCCAGC	chr17:27448571-27448838(-)$1	267	128	163	13.1116
AAGAAAUUAUUGGUACCUGCAGUAAGUAAUAAUUU	chr6:163956026-163956259(+)$1	233	110	145	13.4070
GCGCCGCUUUUGAGGGGCGAACCAAGAUGGCGGCG	chr14:91976395-91976728(-)$1	333	74	109	14.5014
UGGCGGUCACAUGAUGGUUCGGUCUGGUUGUGUCA	chr19:5641709-5642024(+)$1	315	3	38	15.7341
CUUAUUUCCUUUGCUGUUGGGAGCUCAAAGAUGAU	chr4:184201867-184202128(+)$1	261	191	226	15.3229
ACGAGCCAAACUUCGUGAAAUUGAGGUUGGUGUUG	chr3:142761862-142762190(+)$1	328	231	266	11.0442
GAUAUCAGGGUGGUUAAUUAAAAUGAACCAGAUAU	chr10:7791237-7791475(+)$1	238	154	189	14.9934
UAAGAUGGCGGGGAAGAAGAAUGUUCUGUCGUCUC	chr17:73663341-73663658(+)$1	317	107	142	17.0335
GGGGCGCGGCACCAGCACCAGCUGCCCGCGCCCUC	chr2:128180688-128180917(+)$1	229	114	149	13.4470
AGCUUUCCAGACGUGGAUGGACACCAGUGGAGCAC	chr9:117066800-117067053(+)$1	253	107	142	13.1592
CGUUGAGAAGAAAAUGACAGACAUGCUAAAAGAGG	chr9:139700882-139701116(+)$1	234	82	117	13.7632
GUGAUGGAGCUAGCAGAAAAGUUCUGGUGUGAUCA	chr6:56373330-56373646(-)$1	316	179	214	12.6148

#DB
((((.(((..(((((......)))))..))).)))	chr3:184102300-184102580(+)$1	1	138	173	12.2453
((((((.(((.((((......)))).)).).))))	chr20:61569041-61569320(-)$1	1	187	222	15.2982
(((....((.(..((......)).)))....))).	chr17:39976545-39976767(+)$1	1	71	106	15.2696
))((((((((((.((((...)))).))))))))))	chr12:26985900-26986142(-)$1	1	153	188	13.1076
((((((((...((((......))))...)).))))	chr3:156867969-156868252(-)$1	1	25	60	15.4842
(((((((((....((......))...))))).)))	chr12:26985531-26985817(-)$1	1	1	36	13.4642
.....(((.((.(((......))).))))))))))	chr17:27419858-27420115(-)$1	1	120	155	12.2818
(((((((((((..((......)).))))))))).)	chr2:61408354-61408567(+)$1	1	90	125	15.2441
(((((((..(((.((...)).)))...))).))))	chr7:148513673-148513942(-)$1	1	174	209	11.9170
((.(.(.(((((.(((.....))).))))).).))	chr11:62494680-62494948(-)$1	1	189	224	11.6869
(.((((((...(((.(((...))).)))....)))	chr7:73009959-73010186(-)$1	1	34	69	12.3256
((...((..((((((......))))))..))))))	chr2:63053145-63053373(+)$1	1	63	98	12.1057
((((.(((...((((((...))))))...))))))	chr16:88785857-88786134(-)$1	1	238	273	11.6197
....((..(((((((......)))))))..))...	chr9:100777598-100777866(+)$1	1	22	57	13.8585
(((((((((((((((......)))).))..)))))	chr17:73900521-73900841(-)$1	1	255	290	15.5409
(.(..(((.((...(((....))).)))))..).)	chr14:39646697-39646959(+)$1	1	114	149	11.5273
(..((((...(((.(((....))))))...)))).	chr8:27467982-27468196(-)$1	1	155	190	10.7436
(((((((..(((.........)))..))..)))))	chr1:1333512-1333760(-)$1	1	131	166	11.5347
(((((((((((.(((......))))).))))).))	chr14:39748439-39748646(+)$1	1	35	70	12.8779
.((((..(((..(((......))).)))...))))	chr16:58633254-58633515(-)$1	1	177	212	14.9736
(((((((.((((.(((.....)))...)))).)))	chr12:104327636-104327887(+)$1	1	77	112	12.6799
(((....((.(..((......)).)))....))).	chr17:39976453-39976719(+)$1	1	163	198	15.2696
.(((...((((.(((......)))..)).))...)	chr14:102549473-102549730(-)$1	1	209	244	15.5538
.(((((((.((.(((......))).))..))))))	chr8:117861083-117861299(-)$1	1	112	147	16.1428
(..(((.((.(.(((......)))))).)))))))	chr17:79966902-79967168(+)$1	1	117	152	16.3227
..(((((...(((.(......).)))...))))).	chr16:4910768-4911182(+)$1	1	302	337	15.2323
(..(((..(((((((......).))))))..))).	chr17:79866651-79866885(-)$1	1	103	138	12.8659
(((((((((...(((......)))...))))))).	chr9:71766490-71766740(+)$1	1	6	41	16.0442
.(((((((((((((((.....))))))))))))))	chr1:1560278-1560576(+)$1	1	28	63	14.4649
((((((((((((((((....)))).)))...))))	chr1:160232053-160232353(-)$1	1	203	238	11.0937
.(((((((((....(((....)))..)))))))))	chr3:79067710-79067982(-)$1	1	49	84	13.3313
((((((....((.(((.....)))))...))))))	chr2:61411748-61411991(+)$1	1	180	215	14.0387
((((((((.((..((......))...)).))))))	chr2:74750006-74750245(-)$1	1	165	200	14.4034
(((.((((...((((......))))))))...)))	chr3:184042644-184042909(+)$1	1	96	131	13.4677
)(((((((....(((......)))......)))))	chr16:69660242-69660532(+)$1	1	90	125	15.2680
...(((((...((((......))))...)))))))	chr17:74733061-74733313(-)$1	1	51	86	14.4297
((...((((((((((......))))))))))))).	chr12:111908263-111908623(-)$1	1	244	279	15.5308
(((((((((....(((.....))))))))))))).	chr16:89858235-89858501(-)$1	1	22	57	15.5238
((((((.((((.(((......))).)))).)))).	chr17:27448571-27448838(-)$1	1	128	163	13.1116
..((((((((((.(((.....)))..)))))))))	chr6:163956026-163956259(+)$1	1	110	145	13.4070
.(((((((.((..((......))..)).)))))))	chr14:91976395-91976728(-)$1	1	74	109	14.5014
(((((...((..(((......)))..))..)))))	chr19:5641709-5642024(+)$1	1	3	38	15.7341
(((((((.....(((......)))....)))))).	chr4:184201867-184202128(+)$1	1	191	226	15.3229
.((((((((.(((((......)))))))))).)))	chr3:142761862-142762190(+)$1	1	231	266	11.0442
((((((.((.(.(((......))).).)).)))))	chr10:7791237-7791475(+)$1	1	154	189	14.9934
...((((((((((.(......).))))))))))))	chr17:73663341-73663658(+)$1	1	107	142	17.0335
(((((((((...((((....)))).))))))))))	chr2:128180688-128180917(+)$1	1	114	149	13.4470
.((..((((...(((......)))...)))))).(	chr9:117066800-117067053(+)$1	1	107	142	13.1592
(.((....((...(((.....))).))...)).))	chr9:139700882-139701116(+)$1	1	82	117	13.7632
(((((.(.(((((.(......).))))).).))))	chr6:56373330-56373646(-)$1	1	179	214	12.6148

#PSSM
d : 0.14	c : 0.14	g : 0.12	: : 0.12	= : 0.08	f : 0.08	e : 0.06	# : 0.06	i : 0.04	! : 0.04	[ : 0.04	& : 0.02	h : 0.02	b : 0.02	F : 0.02	
g : 0.16	c : 0.14	d : 0.12	= : 0.10	f : 0.10	! : 0.08	[ : 0.06	# : 0.06	i : 0.04	e : 0.04	& : 0.02	h : 0.02	F : 0.02	: : 0.02	b : 0.02	
g : 0.19	= : 0.14	f : 0.14	d : 0.08	c : 0.08	i : 0.06	# : 0.06	! : 0.06	" : 0.04	b : 0.04	& : 0.02	[ : 0.02	a : 0.02	h : 0.02	e : 0.02	
g : 0.19	= : 0.16	f : 0.12	d : 0.10	c : 0.08	# : 0.06	i : 0.06	" : 0.04	! : 0.04	e : 0.04	& : 0.02	a : 0.02	h : 0.02	[ : 0.02	b : 0.02	
= : 0.16	g : 0.16	f : 0.12	e : 0.10	d : 0.08	[ : 0.06	# : 0.06	i : 0.06	c : 0.06	" : 0.06	! : 0.04	& : 0.02	b : 0.02	
= : 0.18	c : 0.14	g : 0.14	e : 0.10	f : 0.08	d : 0.08	# : 0.06	i : 0.06	b : 0.06	" : 0.04	a : 0.02	! : 0.02	[ : 0.02	
= : 0.16	g : 0.12	c : 0.10	[ : 0.10	e : 0.10	# : 0.08	b : 0.06	f : 0.06	! : 0.06	d : 0.06	i : 0.04	" : 0.04	a : 0.02	
= : 0.16	b : 0.12	c : 0.10	e : 0.10	! : 0.10	g : 0.10	" : 0.06	d : 0.06	i : 0.04	f : 0.04	[ : 0.04	# : 0.04	a : 0.02	$ : 0.02	
b : 0.16	= : 0.16	" : 0.14	e : 0.10	[ : 0.10	! : 0.08	g : 0.06	d : 0.06	i : 0.04	# : 0.04	c : 0.02	f : 0.02	$ : 0.02	
b : 0.21	" : 0.19	[ : 0.10	= : 0.10	# : 0.08	c : 0.08	i : 0.04	e : 0.04	f : 0.04	d : 0.04	! : 0.02	g : 0.02	$ : 0.02	
" : 0.18	b : 0.18	= : 0.10	c : 0.10	e : 0.08	a : 0.08	# : 0.08	f : 0.04	! : 0.04	d : 0.04	[ : 0.02	i : 0.02	g : 0.02	$ : 0.02	
! : 0.14	[ : 0.14	d : 0.12	c : 0.12	= : 0.10	" : 0.10	e : 0.08	# : 0.08	f : 0.06	g : 0.02	b : 0.02	$ : 0.02	
c : 0.32	d : 0.14	[ : 0.12	! : 0.10	e : 0.06	# : 0.06	f : 0.06	= : 0.06	" : 0.04	g : 0.02	r : 0.02	
c : 0.40	d : 0.16	b : 0.14	[ : 0.08	f : 0.06	e : 0.04	= : 0.04	g : 0.02	" : 0.02	r : 0.02	# : 0.02	
c : 0.44	d : 0.16	b : 0.14	a : 0.08	e : 0.04	f : 0.04	= : 0.04	[ : 0.02	g : 0.02	r : 0.02	
o : 0.66	c : 0.19	d : 0.06	l : 0.02	f : 0.02	r : 0.02	= : 0.02	
o : 0.66	n : 0.14	c : 0.08	m : 0.04	d : 0.02	l : 0.02	f : 0.02	r : 0.02	
o : 0.66	n : 0.14	m : 0.10	l : 0.06	c : 0.02	r : 0.02	
o : 0.66	n : 0.14	m : 0.10	l : 0.06	b : 0.02	r : 0.02	
o : 0.66	n : 0.14	m : 0.10	l : 0.06	b : 0.02	r : 0.02	
o : 0.66	n : 0.14	d : 0.06	m : 0.06	] : 0.02	l : 0.02	f : 0.02	r : 0.02	
c : 0.50	d : 0.16	b : 0.12	a : 0.08	e : 0.04	f : 0.04	= : 0.04	g : 0.02	
c : 0.50	d : 0.16	b : 0.12	] : 0.08	e : 0.04	f : 0.04	= : 0.04	g : 0.02	
c : 0.52	d : 0.16	e : 0.06	] : 0.06	f : 0.06	= : 0.06	3 : 0.04	g : 0.02	2 : 0.02	
] : 0.23	3 : 0.12	2 : 0.12	d : 0.10	= : 0.08	e : 0.06	a : 0.06	f : 0.06	c : 0.04	b : 0.04	i : 0.02	g : 0.02	6 : 0.02	4 : 0.02	
b : 0.19	3 : 0.16	= : 0.12	c : 0.10	2 : 0.10	e : 0.08	f : 0.06	] : 0.04	d : 0.04	i : 0.02	g : 0.02	6 : 0.02	4 : 0.02	a : 0.02	
b : 0.27	3 : 0.18	= : 0.14	e : 0.08	c : 0.08	i : 0.04	f : 0.04	] : 0.04	d : 0.04	2 : 0.02	g : 0.02	6 : 0.02	4 : 0.02	
b : 0.14	= : 0.14	3 : 0.14	c : 0.12	e : 0.10	d : 0.08	2 : 0.06	4 : 0.06	i : 0.04	g : 0.04	] : 0.04	f : 0.02	6 : 0.02	
= : 0.14	3 : 0.14	2 : 0.12	c : 0.10	e : 0.10	] : 0.08	d : 0.08	4 : 0.06	b : 0.04	i : 0.04	f : 0.04	g : 0.04	6 : 0.02	
= : 0.14	c : 0.12	e : 0.12	2 : 0.10	3 : 0.10	g : 0.08	4 : 0.06	b : 0.06	a : 0.04	i : 0.04	d : 0.04	f : 0.04	] : 0.04	6 : 0.02	
= : 0.16	g : 0.12	] : 0.10	e : 0.10	b : 0.10	d : 0.08	f : 0.08	c : 0.06	4 : 0.06	3 : 0.06	i : 0.04	2 : 0.04	
= : 0.16	g : 0.16	c : 0.10	f : 0.10	] : 0.08	i : 0.08	b : 0.08	e : 0.08	d : 0.06	3 : 0.04	a : 0.02	4 : 0.02	2 : 0.02	
g : 0.19	= : 0.16	f : 0.14	d : 0.10	c : 0.10	i : 0.08	e : 0.08	] : 0.06	3 : 0.04	a : 0.02	b : 0.02	
g : 0.19	= : 0.16	f : 0.14	c : 0.12	d : 0.10	e : 0.08	i : 0.06	] : 0.04	3 : 0.04	a : 0.02	h : 0.02	: : 0.02	
g : 0.18	= : 0.14	f : 0.14	2 : 0.10	d : 0.08	e : 0.08	c : 0.08	i : 0.06	: : 0.04	] : 0.04	3 : 0.02	9 : 0.02	h : 0.02	

#score	692.9043840440658
#seq	50
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_CDS_m1_run1.txt

#BEAR
ff[bb[bbeeeee####cccooooooccc22eeeee7777	chr12:53856199-53856428(+)$1	229	97	137	15.1755
ff[bb[bbeeeee####cccooooooccc22eeeee7777	chr12:53856234-53856448(+)$1	214	62	102	15.1755
ggg[dddd!!ccc!!bb[aooooooa]bb333cccdddd]	chr11:68852519-68852792(+)$1	273	214	254	15.0186
dd!!bb[ffffff[a[cccooooooccc]a]ffffffbb4	chr8:25315622-25315949(-)$1	327	17	57	13.7873
cc[bb!!ccc!!bb[eeeeennnnneeeee]bb22cccbb	chr17:26988783-26989098(-)$1	315	255	295	11.4821
iiiii[a[dddd$$$$$ccclllcccdddd]a]iiiiiii	chr5:154135348-154135594(+)$1	246	175	215	13.6172
cc[==============[aooooooa]=============	chr12:123464896-123465182(+)$1	286	57	97	17.3174
ee:iiiiiiiii[a[eeeeellleeeee]a]iiiiiiiii	chr22:19704769-19705094(+)$1	325	284	324	11.5960
c]bbdddd!!==========oooooo==========]ddd	chr19:44284852-44285117(-)$1	265	181	221	14.5925
gggg[dddda!!ccc!!aooooooa22ccc22a22dddd]	chr16:31044911-31045239(+)$1	328	265	305	14.2505
c"""ccc[a[dddd!!ddddoooooodddddddd]accc3	chr9:80645327-80645588(-)$1	261	140	180	13.3803
ffffff[dddd!!bb!!cccnnnnnccc333bb22dddd]	chr17:47841255-47841510(-)$1	255	24	64	13.3459
ffffff[a[cccccc[ccc[ammmmaccc]ccc]cccaff	chr19:798435-798683(+)$1	248	112	152	12.7646
!ccc!!eeeee[a"""ddddoooooodddd333a]eeeee	chr19:49841917-49842166(-)$1	249	60	100	15.4528
ddccc[iiiiiiiii[cccooooooccc]iiiiiiiiicc	chr17:46627751-46628024(+)$1	273	140	180	15.8849
gggggg[bb[a[a!!a[cccammmma]ccc]a]a]a]bb]	chr22:20862384-20862665(+)$1	281	106	146	14.4091
eeeee[a[ccc####fffffflllffffff4444ccc]a]	chr17:79223763-79224038(-)$1	275	187	227	12.3798
dddbb[bb!!ccc[cccooooooccc]ccc22bb333bb3	chr1:27023201-27023442(+)$1	241	188	228	12.7262
e[dddd[dddd[bbeeeeeooooooeeeee]bb4444ddd	chr2:172379606-172379895(+)$1	289	4	44	12.0794
cccffffff"""bb!!a[bboooooobb]a22bb]fffff	chrX:129147752-129148059(+)$1	307	213	253	13.2761
[ggggggg!!bb"""ccc[ccclllccccccbb22ggggg	chrX:153629156-153629468(+)$1	312	2	42	12.9235
ddccc!!a[eeeee!!a[bboooooobb333a22eeeee]	chr21:45561122-45561366(+)$1	244	71	111	15.0211
eee$$$$$ggggggg!!ccclllccc]ggggggg4444ee	chr17:79220712-79220973(-)$1	261	35	75	12.7096
bb[bb[bb[a!!ccc[cccooooooccc]ccc22a]bb]b	chr9:140323142-140323446(+)$1	304	203	243	14.1206
dddd"""ccc[ccc[dddd[ammmma]dddd]cccccc44	chr17:7476602-7476864(+)$1	262	148	188	12.2928
=========]cccgggggggoooooogggggggeeeeebb	chr21:47571550-47571812(-)$1	262	91	131	13.9492
eee===========!!cccannnnna]ccc]=========	chr16:67190440-67190717(-)$1	277	53	93	16.8509
ccc[eeeeecccccc[bbcccooooooccc]bb]ccc888	chr19:2270332-2270547(+)$1	215	109	149	12.5701
e[a[==========!!avvvvvvvvvvvvva22=======	chrX:41193836-41194064(+)$1	228	8	48	12.3168
ddddddd[a[gggggggcccmmmmccc4444ggggggg]a	chr2:132044624-132044857(+)$1	233	67	107	11.8424
eeee[dddd[bb[a"""cccooooooccca]bbdddd]ee	chr19:18548455-18548762(-)$1	307	147	187	14.7744
ff[bb[bbeeeee####cccooooooccc22eeeee7777	chr12:53856179-53856399(+)$1	220	117	157	15.1755
ff[bb[bbeeeee####cccooooooccc22eeeee7777	chr12:53856248-53856451(+)$1	203	48	88	15.1755
[eeeee!!ccc####ccc[bblllbb]ccc4444ccceee	chr19:49843460-49843688(-)$1	228	98	138	13.4045
A:iiiiiiiii$$$$$a[aooooooa]a4444iiiiiiii	chr19:1592438-1592725(-)$1	287	83	123	14.3941
cccccccc[a[gggggggddddllldddd22gggggggac	chr11:126146263-126146516(+)$1	253	58	98	11.7815
=============ccc[eeeeellleeeee]ccc333===	chr19:38876626-38876892(+)$1	266	45	85	13.4488
==[a"""dddd[ccca[cccnnnnnccc]a22cccdddda	chr15:42867759-42868016(+)$1	257	137	177	14.6040
fffff[bbdddd[ccc[ccclllccc]ccc333dddd333	chr11:236089-236384(-)$1	295	154	194	13.6937
eegggggggeeeee!!a[bboooooobb]a22eeeee]gg	chr8:103424343-103424626(-)$1	283	136	176	14.7964
ggdddd[ccc[ggggggg[bblllbb]gggggggccc]dd	chr11:2405786-2406026(+)$1	240	12	52	11.2946
gggggg!!eeeeeddddcccnnnnnccc]dddd4444eee	chr12:132402829-132403171(+)$1	342	270	310	12.6583
fffff[a[cccdddd!!cccnnnnncccdddd]ccc]a]f	chr17:62501773-62502029(-)$1	256	173	213	12.9293
""eeeee[dddd[a[ccc[bblllbb]ccc]a22dddd]e	chr7:104753062-104753345(-)$1	283	179	219	11.7123
gggggg!!eeeeeddddcccnnnnnccc]dddd4444eee	chr12:132402971-132403220(+)$1	249	128	168	12.6583
ff[bb[bbeeeee####cccooooooccc22eeeee7777	chr12:53856174-53856379(+)$1	205	122	162	15.1755
==============!!cccxxxxxxxxxxxxxxxccc22=	chr18:51750757-51751054(-)$1	297	147	187	12.8988
dddd"""ccc[ccc[dddd[ammmma]dddd]cccccc44	chr17:7476695-7476920(+)$1	225	55	95	12.2928
"""dddd!!ccc!!ccc[bbmmmmbb]ccc22ccc4444d	chrX:152939528-152939802(-)$1	274	90	130	12.4360
ccc[ggggggg[ccc[ccc[bblllbbccccccggggggg	chr19:49964943-49965225(+)$1	282	82	122	12.3432
ggggggg!!ccc!!eeeeeooooooeeeee22ccc]gggg	chr19:1421032-1421271(+)$1	239	60	100	14.5652
[iiiiiiiii$$$$$eeeeennnnneeeee22iiiiiiii	chr11:2005455-2005814(+)$1	359	17	57	12.8794
iigggggggeeeee"""cccooooooccc22eeeee8888	chr19:2270347-2270595(+)$1	248	170	210	15.5613
ff[==========!!avvvvvvvvvvvvva22========	chrX:41193694-41193955(+)$1	261	151	191	13.2250
eeeedddd####gggggggoooooogggggggdddd]eee	chr2:172016737-172017019(-)$1	282	101	141	12.4469
dd[a"""ggggggg"""cccooooooccc22gggggggad	chr12:49444054-49444313(-)$1	259	167	207	17.2064
iiii"""dddd$$$$$cccoooooocccdddd333iiiii	chr19:18653594-18653872(-)$1	278	233	273	15.6549

#otherMatches

#Seq PSSM
CAUCCCGUACCGGCCCAAGCCGUCCAGCUCUCCGGUCAUC	chr12:53856199-53856428(+)$1	229	97	137	15.1755
CAUCCCGUACCGGCCCAAGCCGUCCAGCUCUCCGGUCAUC	chr12:53856234-53856448(+)$1	214	62	102	15.1755
GGCUCUUCCUGGAAACAGCAGGUGAGGUGGGGUCCGAGGU	chr11:68852519-68852792(+)$1	273	214	254	15.0186
UGGGUGUGGGACAGAGUGCGUGCGUGUGGUGUGUCCCCAA	chr8:25315622-25315949(-)$1	327	17	57	13.7873
GCGUCCAGCCUGGGUGUCGUUACUUGCGGCUCCGUGGUGA	chr17:26988783-26989098(-)$1	315	255	295	11.4821
GCAGCAGGAGCGCGAGAGCCCGCGGCCGCUGCAGCUGCCC	chr5:154135348-154135594(+)$1	246	175	215	13.6172
CCGGGGAGGAGGGCGGCGCGCGCGAGGGUCGCCUUCUUCC	chr12:123464896-123465182(+)$1	286	57	97	17.3174
CAGGGCCACCUGAGGGCUGCAGGGCAGCGCAUGGGUGGCC	chr22:19704769-19705094(+)$1	325	284	324	11.5960
CGGCUGGGCACUGGUGCUGGCAGGAACUGGCAUUGGACUC	chr19:44284852-44285117(-)$1	265	181	221	14.5925
GGAUGGGGACGGGCGGACGAACUGGAACGCAGGACUUCUG	chr16:31044911-31045239(+)$1	328	265	305	14.2505
AUUCCCGGAGCACUCAUGGUGAGGAAGCCAAGUGGUUGGC	chr9:80645327-80645588(-)$1	261	140	180	13.3803
UCUCGCAGUGGGGCUGAGGCAGGCAGCCGGGAGAGCCAUg	chr17:47841255-47841510(-)$1	255	24	64	13.3459
GGGUCCUGCAGACGGCGAGACGAGGGCUCCCCGCUCUCGG	chr19:798435-798683(+)$1	248	112	152	12.7646
GGGCAAGAUCACCUUAUCUAGGAUUGUGGAGUCGUUGGUC	chr19:49841917-49842166(-)$1	249	60	100	15.4528
CCGGCAGGGGGCGGCAGCGGAUCCGCGUAGCCGCCCCCGC	chr17:46627751-46628024(+)$1	273	140	180	15.8849
UUGGGGUGUGGGCGGUGGGACGGAGGAUCUGAGGGUGACC	chr22:20862384-20862665(+)$1	281	106	146	14.4091
GUGCUGAAGUCAAGAGCCUGUCUGGCGGGCCACAGACCUG	chr17:79223763-79224038(-)$1	275	187	227	12.3798
GCCGCCGUCUUCCACCAACAACAUGGCGGACAACAAAGCC	chr1:27023201-27023442(+)$1	241	188	228	12.7262
UGCCGGAGCGCCGCGCAGUCGGGCCGCUGCAGCCCACGCG	chr2:172379606-172379895(+)$1	289	4	44	12.0794
caccucugcacccaucccggccuccUUCAGUUUGAGUAGA	chrX:129147752-129148059(+)$1	307	213	253	13.2761
UGGCCCUCUGGACAAGUGGCGGGCCCUGCACUCAUGAGGG	chrX:153629156-153629468(+)$1	312	2	42	12.9235
UCGGGAUCCCGUCCUUGUCAGAGAAGUGUUCCUUGGAUGA	chr21:45561122-45561366(+)$1	244	71	111	15.0211
UGUGGGCCGCGCCGUCCCUGGCCCAGCACGGUGCAUGAGC	chr17:79220712-79220973(-)$1	261	35	75	12.7096
GUGGCGUCGGCACAGUGCCAGCUGGGGCUCUGGACAGAGG	chr9:140323142-140323446(+)$1	304	203	243	14.1206
GGCACCAGGAGCCCACCCGGCGCCGGGCGGGCGGGUCCAU	chr17:7476602-7476864(+)$1	262	148	188	12.2928
CUUCCCGGGACCCCGGGGGGCUGUUCCCUCCCGUGGGGGA	chr21:47571550-47571812(-)$1	262	91	131	13.9492
GGUGGGGACAGCUGAACCACGUGGGGCUGGGUAGUUGUCU	chr16:67190440-67190717(-)$1	277	53	93	16.8509
GGAUGGCCCGGGACGCGCCGGGCGAGGCCGCGCACGUAGA	chr19:2270332-2270547(+)$1	215	109	149	12.5701
CAUGCGCGAAUCCCGACUGAUUAGUGACCUGGGGGGGUUU	chrX:41193836-41194064(+)$1	228	8	48	12.3168
CUGCUGGAUGUCUAGGUGGUAGAAACCAAGGACCUAGGGA	chr2:132044624-132044857(+)$1	233	67	107	11.8424
GAGAAGGGCACGGGACCCGGGAUUCACUGCGCGGCCUGUC	chr19:18548455-18548762(-)$1	307	147	187	14.7744
CAUCCCGUACCGGCCCAAGCCGUCCAGCUCUCCGGUCAUC	chr12:53856179-53856399(+)$1	220	117	157	15.1755
CAUCCCGUACCGGCCCAAGCCGUCCAGCUCUCCGGUCAUC	chr12:53856248-53856451(+)$1	203	48	88	15.1755
GGGGCCUAACGGUAUCGAGCGAGCCGGUUGUAGACGUGGU	chr19:49843460-49843688(-)$1	228	98	138	13.4045
GAGCCGGGCGCAAUGGAGCGGAAGAGGUGGGAGUGCCCGG	chr19:1592438-1592725(-)$1	287	83	123	14.3941
AGGCCUAGAGACUCCGCUUGUUGCAGACACCAGUGGAGCC	chr11:126146263-126146516(+)$1	253	58	98	11.7815
CAGGGCAGGUGCGGGCCUCCGGGGCCCGGGAGCUGAGUGU	chr19:38876626-38876892(+)$1	266	45	85	13.4488
UGGGUUGUGGCAGACGGAUGGCGAACGUGCAGGUCGCCGU	chr15:42867759-42868016(+)$1	257	137	177	14.6040
CUGCGGCUGUCGGCUGGUGCUUGGCGGCAGGGACGAUGUG	chr11:236089-236384(-)$1	295	154	194	13.6937
UCGAGUGGAGGACGAGAAGGAAAGCACCAUGACGUCCAUC	chr8:103424343-103424626(-)$1	283	136	176	14.7964
GGGCCCGGCCACUUGGGAGGCGGGGCAUCCUGGGGGCGGG	chr11:2405786-2406026(+)$1	240	12	52	11.2946
CGAGGCCCCAGCCCCUGAGCUCCCUGCUCCAGGACACGGC	chr12:132402829-132403171(+)$1	342	270	310	12.6583
GUUUCGGGAGGUGUUUUUGGGGUGGCCGGGCAUUCUGUGG	chr17:62501773-62502029(-)$1	256	173	213	12.9293
CAUGUGCUACAGAGUGUUGCUGAUGGGAAUUCGGCUGUUG	chr7:104753062-104753345(-)$1	283	179	219	11.7123
CGAGGCCCCAGCCCCUGAGCUCCCUGCUCCAGGACACGGC	chr12:132402971-132403220(+)$1	249	128	168	12.6583
CAUCCCGUACCGGCCCAAGCCGUCCAGCUCUCCGGUCAUC	chr12:53856174-53856379(+)$1	205	122	162	15.1755
GCCGCUGCUGCCCGGAGCAGGAGGAGGGGGAGAGUGCGGC	chr18:51750757-51751054(-)$1	297	147	187	12.8988
GGCACCAGGAGCCCACCCGGCGCCGGGCGGGCGGGUCCAU	chr17:7476695-7476920(+)$1	225	55	95	12.2928
ggagccagagggagcccagugagUGCCGGGAGCCCAGGGU	chrX:152939528-152939802(-)$1	274	90	130	12.4360
UCCGGAAGGUGGCCUUCUGCGGAGCCCCGGAGGUACCUUC	chr19:49964943-49965225(+)$1	282	82	122	12.3432
GGGAGGGUUUGGAGGGUUCCCGUGUGAACUAACUAUCCUU	chr19:1421032-1421271(+)$1	239	60	100	14.5652
CUGGUGCCCGUGAUAUCCGCCUGACGCGGAAGUGGGCACC	chr11:2005455-2005814(+)$1	359	17	57	12.8794
GCUGGGGGUGGCGCACUCCGACAGCCCGGCAGCGCCCUGG	chr19:2270347-2270595(+)$1	248	170	210	15.5613
AUGCGCGAAUCCCGACUGAUUAGUGACCUGGGGGGGUUUG	chrX:41193694-41193955(+)$1	261	151	191	13.2250
UGGAAGUUUGGAGGGGCCGCCAUCUUGGUCCCAGCUCUCC	chr2:172016737-172017019(-)$1	282	101	141	12.4469
UGAGAAAGUUUCAGAACCUGAAUGCCCAGCCUUGGAACCC	chr12:49444054-49444313(-)$1	259	167	207	17.2064
AGCUUGGGGCCUGGGGGACGGAGGGGUUGGUUAUUGGUUC	chr19:18653594-18653872(-)$1	278	233	273	15.6549

#DB
((.((.(((((((....(((......)))..)))))....	chr12:53856199-53856428(+)$1	1	97	137	15.1755
((.((.(((((((....(((......)))..)))))....	chr12:53856234-53856448(+)$1	1	62	102	15.1755
(((.((((..(((..((.(......).))...))))))).	chr11:68852519-68852792(+)$1	1	214	254	15.0186
((..((.((((((.(.(((......))).).)))))))).	chr8:25315622-25315949(-)$1	1	17	57	13.7873
((.((..(((..((.(((((.....))))).))..)))))	chr17:26988783-26989098(-)$1	1	255	295	11.4821
(((((.(.((((.....(((...))))))).).)))))))	chr5:154135348-154135594(+)$1	1	175	215	13.6172
((.((((((((((((((.(......).)))))))))))))	chr12:123464896-123465182(+)$1	1	57	97	17.3174
)).(((((((((.(.(((((...))))).).)))))))))	chr22:19704769-19705094(+)$1	1	284	324	11.5960
).))((((..((((((((((......)))))))))).)))	chr19:44284852-44285117(-)$1	1	181	221	14.5925
((((.(((((..(((..(......)..)))..)..)))).	chr16:31044911-31045239(+)$1	1	265	305	14.2505
(...(((.(.((((..((((......)))))))).)))).	chr9:80645327-80645588(-)$1	1	140	180	13.3803
((((((.((((..((..(((.....)))...))..)))).	chr17:47841255-47841510(-)$1	1	24	64	13.3459
((((((.(.((((((.(((.(....)))).))).))))))	chr19:798435-798683(+)$1	1	112	152	12.7646
.(((..(((((.(...((((......))))...).)))))	chr19:49841917-49842166(-)$1	1	60	100	15.4528
))(((.(((((((((.(((......))).)))))))))))	chr17:46627751-46628024(+)$1	1	140	180	15.8849
((((((.((.(.(..(.((((....).))).).).).)).	chr22:20862384-20862665(+)$1	1	106	146	14.4091
(((((.(.(((....((((((...))))))....))).).	chr17:79223763-79224038(-)$1	1	187	227	12.3798
(((((.((..(((.(((......))).)))..))...)).	chr1:27023201-27023442(+)$1	1	188	228	12.7262
(.((((.((((.(((((((......))))).))....)))	chr2:172379606-172379895(+)$1	1	4	44	12.0794
(((((((((...((..(.((......)).)..)).)))))	chrX:129147752-129148059(+)$1	1	213	253	13.2761
.(((((((..((...(((.(((...))))))))..)))))	chrX:153629156-153629468(+)$1	1	2	42	12.9235
(((((..(.(((((..(.((......))...)..))))).	chr21:45561122-45561366(+)$1	1	71	111	15.0211
(((.....(((((((..(((...))).)))))))....))	chr17:79220712-79220973(-)$1	1	35	75	12.7096
((.((.((.(..(((.(((......))).)))..).)).)	chr9:140323142-140323446(+)$1	1	203	243	14.1206
((((...(((.(((.((((.(....).)))).))))))..	chr17:7476602-7476864(+)$1	1	148	188	12.2928
))))))))).)))(((((((......)))))))(((((((	chr21:47571550-47571812(-)$1	1	91	131	13.9492
)))(((((((((((..((((.....).))).)))))))))	chr16:67190440-67190717(-)$1	1	53	93	16.8509
(((.(((((((((((.(((((......))).)).)))...	chr19:2270332-2270547(+)$1	1	109	149	12.5701
(.(.((((((((((..(.............)..)))))))	chrX:41193836-41194064(+)$1	1	8	48	12.3168
)))((((.(.((((((((((....)))....))))))).)	chr2:132044624-132044857(+)$1	1	67	107	11.8424
((((.((((.((.(...(((......)))).)))))).))	chr19:18548455-18548762(-)$1	1	147	187	14.7744
((.((.(((((((....(((......)))..)))))....	chr12:53856179-53856399(+)$1	1	117	157	15.1755
((.((.(((((((....(((......)))..)))))....	chr12:53856248-53856451(+)$1	1	48	88	15.1755
.(((((..(((....(((.((...)).)))....))))))	chr19:49843460-49843688(-)$1	1	98	138	13.4045
(.(((((((((.....(.(......).)....))))))))	chr19:1592438-1592725(-)$1	1	83	123	14.3941
)))))(((.(.(((((((((((...))))..)))))))))	chr11:126146263-126146516(+)$1	1	58	98	11.7815
((((((((((((((((.(((((...))))).)))...)))	chr19:38876626-38876892(+)$1	1	45	85	13.4488
((.(...((((.((((.(((.....))).)..))))))))	chr15:42867759-42868016(+)$1	1	137	177	14.6040
(((((.((((((.(((.(((...))).)))...))))...	chr11:236089-236384(-)$1	1	154	194	13.6937
))((((((((((((..(.((......)).)..))))).))	chr8:103424343-103424626(-)$1	1	136	176	14.7964
((((((.(((.(((((((.((...)).)))))))))).))	chr11:2405786-2406026(+)$1	1	12	52	11.2946
((((((..((((((((((((.....))).))))....)))	chr12:132402829-132403171(+)$1	1	270	310	12.6583
(((((.(.(((((((..(((.....))))))).))).).)	chr17:62501773-62502029(-)$1	1	173	213	12.9293
..(((((.((((.(.(((.((...)).))).)..)))).)	chr7:104753062-104753345(-)$1	1	179	219	11.7123
((((((..((((((((((((.....))).))))....)))	chr12:132402971-132403220(+)$1	1	128	168	12.6583
((.((.(((((((....(((......)))..)))))....	chr12:53856174-53856379(+)$1	1	122	162	15.1755
((((((((((((((..(((...............)))..)	chr18:51750757-51751054(-)$1	1	147	187	12.8988
((((...(((.(((.((((.(....).)))).))))))..	chr17:7476695-7476920(+)$1	1	55	95	12.2928
...((((..(((..(((.((....)).)))..)))....)	chrX:152939528-152939802(-)$1	1	90	130	12.4360
(((.(((((((.(((.(((.((...)))))))))))))))	chr19:49964943-49965225(+)$1	1	82	122	12.3432
(((((((..(((..(((((......)))))..))).))))	chr19:1421032-1421271(+)$1	1	60	100	14.5652
.(((((((((.....(((((.....)))))..))))))))	chr11:2005455-2005814(+)$1	1	17	57	12.8794
((((((((((((((...(((......)))..)))))....	chr19:2270347-2270595(+)$1	1	170	210	15.5613
((.((((((((((..(.............)..))))))))	chrX:41193694-41193955(+)$1	1	151	191	13.2250
((((((((....(((((((......))))))))))).)))	chr2:172016737-172017019(-)$1	1	101	141	12.4469
((.(...(((((((...(((......)))..)))))))))	chr12:49444054-49444313(-)$1	1	167	207	17.2064
((((...((((.....(((......)))))))...)))))	chr19:18653594-18653872(-)$1	1	233	273	15.6549

#PSSM
f : 0.17	e : 0.15	d : 0.14	c : 0.14	g : 0.12	= : 0.07	i : 0.05	[ : 0.05	" : 0.03	! : 0.01	b : 0.01	A : 0.01	
f : 0.17	g : 0.14	d : 0.14	e : 0.14	c : 0.12	i : 0.07	= : 0.07	" : 0.05	[ : 0.03	] : 0.01	b : 0.01	: : 0.01	
[ : 0.19	g : 0.15	c : 0.12	e : 0.12	d : 0.10	i : 0.07	f : 0.07	= : 0.05	" : 0.03	! : 0.01	: : 0.01	b : 0.01	a : 0.01	
b : 0.15	g : 0.14	= : 0.10	d : 0.10	i : 0.08	f : 0.08	e : 0.08	[ : 0.07	c : 0.07	a : 0.03	! : 0.01	" : 0.01	$ : 0.01	
b : 0.15	g : 0.14	d : 0.12	= : 0.12	f : 0.08	" : 0.08	i : 0.07	c : 0.07	e : 0.07	[ : 0.03	! : 0.01	$ : 0.01	
[ : 0.21	d : 0.15	g : 0.14	= : 0.12	" : 0.08	! : 0.05	i : 0.05	f : 0.05	e : 0.05	c : 0.03	b : 0.01	$ : 0.01	
b : 0.14	d : 0.12	= : 0.12	[ : 0.10	! : 0.08	g : 0.08	" : 0.08	i : 0.07	a : 0.05	e : 0.05	c : 0.03	f : 0.01	$ : 0.01	
b : 0.15	d : 0.15	= : 0.12	[ : 0.10	c : 0.08	g : 0.08	! : 0.08	i : 0.07	f : 0.03	a : 0.03	e : 0.03	$ : 0.01	
e : 0.15	d : 0.15	c : 0.12	= : 0.12	! : 0.10	g : 0.08	i : 0.07	[ : 0.07	f : 0.03	a : 0.03	b : 0.01	# : 0.01	
e : 0.19	c : 0.19	d : 0.12	= : 0.10	! : 0.07	i : 0.07	[ : 0.07	a : 0.05	g : 0.05	f : 0.01	" : 0.01	] : 0.01	# : 0.01	
e : 0.19	c : 0.17	d : 0.14	= : 0.12	g : 0.07	[ : 0.07	! : 0.05	i : 0.05	b : 0.03	f : 0.01	a : 0.01	" : 0.01	$ : 0.01	# : 0.01	
e : 0.17	c : 0.15	= : 0.12	d : 0.08	[ : 0.08	g : 0.08	! : 0.07	# : 0.05	$ : 0.05	i : 0.03	b : 0.03	f : 0.01	" : 0.01	
c : 0.19	e : 0.17	= : 0.12	g : 0.10	$ : 0.07	[ : 0.07	b : 0.05	! : 0.05	d : 0.03	a : 0.03	# : 0.03	f : 0.01	i : 0.01	" : 0.01	
c : 0.17	# : 0.12	g : 0.12	! : 0.08	= : 0.08	b : 0.07	$ : 0.07	d : 0.07	a : 0.05	e : 0.05	[ : 0.03	" : 0.03	i : 0.01	
! : 0.17	c : 0.17	# : 0.12	g : 0.10	[ : 0.08	" : 0.08	$ : 0.07	d : 0.05	= : 0.03	e : 0.03	a : 0.01	b : 0.01	i : 0.01	
! : 0.19	c : 0.12	[ : 0.10	# : 0.08	e : 0.08	g : 0.08	" : 0.07	d : 0.07	$ : 0.05	a : 0.05	= : 0.03	b : 0.01	f : 0.01	
c : 0.22	d : 0.10	# : 0.08	e : 0.08	a : 0.08	g : 0.08	! : 0.07	[ : 0.07	" : 0.05	b : 0.03	= : 0.03	$ : 0.01	f : 0.01	v : 0.01	
c : 0.50	[ : 0.12	e : 0.10	d : 0.07	g : 0.07	v : 0.03	= : 0.01	a : 0.01	f : 0.01	o : 0.01	b : 0.01	
c : 0.47	e : 0.10	d : 0.08	b : 0.07	[ : 0.07	a : 0.05	o : 0.03	g : 0.03	v : 0.03	= : 0.01	f : 0.01	
c : 0.35	o : 0.21	b : 0.12	e : 0.07	[ : 0.07	d : 0.05	v : 0.03	= : 0.01	f : 0.01	g : 0.01	a : 0.01	x : 0.01	
o : 0.47	n : 0.14	l : 0.07	a : 0.07	b : 0.07	c : 0.03	v : 0.03	m : 0.03	f : 0.01	d : 0.01	e : 0.01	x : 0.01	
o : 0.49	n : 0.14	l : 0.14	m : 0.10	v : 0.03	c : 0.01	d : 0.01	e : 0.01	x : 0.01	b : 0.01	
o : 0.49	l : 0.21	n : 0.14	m : 0.10	v : 0.03	x : 0.01	
o : 0.47	n : 0.14	l : 0.14	m : 0.10	c : 0.07	v : 0.03	e : 0.01	x : 0.01	
o : 0.45	n : 0.14	c : 0.08	m : 0.07	l : 0.07	b : 0.07	v : 0.03	e : 0.01	a : 0.01	f : 0.01	x : 0.01	
o : 0.28	c : 0.26	a : 0.14	e : 0.10	b : 0.08	v : 0.03	2 : 0.01	f : 0.01	d : 0.01	x : 0.01	g : 0.01	
c : 0.35	] : 0.24	e : 0.10	d : 0.07	b : 0.07	g : 0.03	v : 0.03	= : 0.01	2 : 0.01	f : 0.01	o : 0.01	x : 0.01	
c : 0.50	e : 0.10	d : 0.10	b : 0.07	g : 0.07	= : 0.03	v : 0.03	f : 0.01	4 : 0.01	a : 0.01	x : 0.01	
c : 0.35	] : 0.15	d : 0.14	e : 0.08	g : 0.07	= : 0.03	3 : 0.03	v : 0.03	4 : 0.03	b : 0.01	f : 0.01	x : 0.01	
c : 0.21	d : 0.15	2 : 0.14	a : 0.12	e : 0.08	g : 0.07	3 : 0.05	= : 0.03	4 : 0.03	] : 0.01	i : 0.01	f : 0.01	v : 0.01	x : 0.01	
2 : 0.29	] : 0.19	d : 0.12	3 : 0.08	c : 0.07	4 : 0.07	g : 0.07	= : 0.03	i : 0.01	a : 0.01	x : 0.01	
2 : 0.17	g : 0.12	e : 0.10	b : 0.10	d : 0.08	a : 0.07	c : 0.07	3 : 0.05	= : 0.05	4 : 0.05	i : 0.03	] : 0.03	f : 0.01	x : 0.01	
c : 0.15	b : 0.14	e : 0.12	g : 0.10	= : 0.07	i : 0.07	d : 0.07	2 : 0.07	] : 0.05	3 : 0.05	4 : 0.03	f : 0.01	a : 0.01	x : 0.01	
e : 0.14	c : 0.14	2 : 0.12	g : 0.10	i : 0.08	= : 0.08	4 : 0.08	d : 0.07	] : 0.03	a : 0.03	b : 0.03	f : 0.01	x : 0.01	3 : 0.01	
c : 0.22	e : 0.15	i : 0.08	= : 0.08	2 : 0.07	] : 0.07	4 : 0.07	g : 0.07	d : 0.07	3 : 0.05	f : 0.01	a : 0.01	
e : 0.17	c : 0.17	d : 0.14	i : 0.10	= : 0.08	4 : 0.08	g : 0.08	f : 0.03	a : 0.03	3 : 0.03	] : 0.03	
c : 0.17	d : 0.12	i : 0.10	g : 0.10	7 : 0.08	4 : 0.08	= : 0.07	] : 0.07	e : 0.07	f : 0.03	3 : 0.03	b : 0.01	8 : 0.01	
d : 0.12	e : 0.12	i : 0.10	g : 0.10	7 : 0.08	= : 0.08	b : 0.07	c : 0.07	] : 0.07	a : 0.03	4 : 0.03	8 : 0.03	f : 0.01	3 : 0.01	2 : 0.01	
e : 0.14	d : 0.12	7 : 0.08	b : 0.08	i : 0.08	= : 0.08	g : 0.07	] : 0.07	a : 0.05	4 : 0.05	c : 0.03	f : 0.03	8 : 0.03	3 : 0.01	2 : 0.01	
e : 0.14	] : 0.10	= : 0.10	7 : 0.08	i : 0.08	d : 0.08	g : 0.07	4 : 0.05	b : 0.05	3 : 0.05	f : 0.05	c : 0.03	8 : 0.03	a : 0.03	

#score	781.498354998749
#seq	57
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_CDS_m3_run1.txt

#BEAR
ggg[ccc[bbnnnnnbb]ccc22ggg	chr17:46048626-46048844(+)$1	218	40	66	13.5299
eee!!eeeeennnnneeeee]eeeee	chr6:35888149-35888406(-)$1	257	222	248	12.6513
c"""ffffffnnnnnffffff4444c	chr1:11866259-11866509(+)$1	250	139	165	12.6874
f!!gggggggnnnnnggggggg22ff	chr17:4458472-4458761(-)$1	289	242	268	12.8579
[dddd"""bbnnnnnbb22ddddhhh	chr1:40626959-40627253(+)$1	294	15	41	10.8642
eee!!eeeeennnnneeeee22eeee	chr1:162762348-162762578(+)$1	230	180	206	12.7065
ffff[ccc[annnnna]ccc]fffff	chr11:27528158-27528416(-)$1	258	88	114	12.6534
hhh[ccc[bbnnnnnbb]ccc]hhhh	chr10:134145079-134145446(-)$1	367	43	69	12.5473
b[bb[eeeeennnnneeeee22bb]b	chr22:29137974-29138280(+)$1	306	81	107	11.3813
ddd[a!!cccnnnnnccc]a]ddddB	chr19:10812079-10812368(+)$1	289	231	257	11.6814
dd:gggggggnnnnngggggggeeee	chr17:56084305-56084591(-)$1	286	241	267	11.7953
bb[eeeee[annnnna]eeeee]bb]	chr1:1243040-1243406(-)$1	366	225	251	12.2518
eee"""ddddnnnnndddd]eeeee]	chrX:69353683-69353961(+)$1	278	7	33	12.5405
eeee!!ddddnnnnndddd22eeeee	chr1:3566396-3566721(-)$1	325	134	160	12.0576
hh!!ffffffnnnnnffffffhhhhh	chr19:5719784-5720053(-)$1	269	140	166	11.7440
ddd"""ddddnnnnndddd333dddd	chr15:23086149-23086458(-)$1	309	96	122	12.6117
gg!!ffffffnnnnnffffffggggg	chr8:23104054-23104354(+)$1	300	183	209	12.9161
"""eeeeebbnnnnnbb]eeeee333	chr9:131418710-131419056(-)$1	346	79	105	12.7885
fffffeeeeennnnneeeee]fffff	chr16:67281196-67281507(-)$1	311	123	149	11.7043
bb[gggggggnnnnnggggggg4444	chrX:54209430-54209731(-)$1	301	267	293	12.8579
c"""ffffffnnnnnffffff4444c	chr1:11866189-11866459(+)$1	270	209	235	12.6874
[eeeee[cccnnnnnccc]eeeee]c	chr11:61197490-61197764(+)$1	274	199	225	12.7652
!ffffff[bbnnnnnbbffffffggg	chr20:37590896-37591153(+)$1	257	35	61	12.4706
[iiiiiiiiinnnnniiiiiiiii]b	chr9:139981330-139981642(+)$1	312	254	280	13.6710
ggggg[bb[annnnna]bb]gggggg	chr18:2960655-2960949(-)$1	294	208	234	12.8509
ddddffffffnnnnnffffff]dddd	chr1:29557182-29557539(-)$1	357	83	109	11.3998
+iiiiiiiiinnnnniiiiiiiii22	chr3:122785919-122786153(+)$1	234	67	93	12.7399
!bb[aeeeeennnnneeeee]a]bb]	chr17:79213048-79213326(+)$1	278	125	151	12.2851
ee"""ccc[annnnna]ccc333eee	chr19:11350265-11350526(+)$1	261	193	219	14.1361
hhh[ccc[bbnnnnnbb]ccc22hhh	chr17:46048538-46048801(+)$1	263	128	154	12.5917
fff"""ddddnnnnndddd22fffff	chr12:56321427-56321787(-)$1	360	198	224	11.9844
[dddd!!cccnnnnnccc22ddddcc	chr16:15068820-15069163(+)$1	343	240	266	11.7352
gggggbbcccnnnnnccc]bb]gggg	chr18:51795828-51796147(+)$1	319	275	301	12.6265
:eeeee[cccnnnnnccceeeeeddd	chr11:67771369-67771676(-)$1	307	163	189	11.2723
hh"""bb[bbnnnnnbb]bb4444hh	chr6:24666909-24667198(-)$1	289	245	271	12.7037
!iiiiiiiiinnnnniiiiiiiii22	chr14:68162300-68162578(-)$1	278	116	142	13.5281
bb[eeeee[annnnna]eeeee]bb]	chr19:18632630-18632970(-)$1	340	155	181	12.2518
eeeee[ddddnnnnndddd]eeeee:	chr11:66384048-66384295(+)$1	247	216	242	10.9835
iii[ffffffnnnnnffffff333ii	chr15:65321725-65322033(-)$1	308	149	175	13.3087
eee[ccc!!annnnna22ccc]eeee	chr7:100136897-100137155(+)$1	258	43	69	12.6286
ddccc[bbbbnnnnnbb]bb22ccc]	chr16:2570305-2570561(+)$1	256	137	163	12.1278
bb"""a[cccnnnnnccca333bb44	chr6:30640556-30640865(-)$1	309	228	254	13.2654
ggggggg[bbnnnnnbb]ggggggg]	chr1:226111639-226111957(-)$1	318	221	247	13.7472
iiiiibb[bbnnnnnbbbb]iiiiii	chr14:78174185-78174463(-)$1	278	68	94	12.9733
ffff!!bb[annnnna]bb333ffff	chr16:2587919-2588235(+)$1	316	117	143	12.6017
ccc"""ddddnnnnndddd4444ccc	chr3:38388187-38388524(+)$1	337	168	194	12.9998
###eeeee[annnnna]eeeee333c	chr17:72771696-72771952(-)$1	256	64	90	12.9421
#iiiiiiiiinnnnniiiiiiiiiad	chr15:69112984-69113257(-)$1	273	106	132	13.5565
[iiiiiiiiinnnnniiiiiiiiibb	chr1:179051102-179051458(+)$1	356	264	290	13.4115
[ccc!!ddddnnnnnddddcccdddd	chr7:148823161-148823466(-)$1	305	168	194	11.9915
ffffffddddnnnnndddd333ffff	chr11:126138947-126139299(+)$1	352	57	83	12.1565
[bb[bb[cccnnnnnccc]bbbbbb]	chr2:169103770-169104038(-)$1	268	121	147	11.0597
gggggggcccnnnnnccc333ggggg	chr2:190306099-190306404(+)$1	305	80	106	13.8969
dd"""bb[bbnnnnnbb]bb333ddd	chr3:101568257-101568621(+)$1	364	147	173	13.0758
eccc[eeeeennnnneeeee22ccc]	chr6:43028961-43029284(+)$1	323	130	156	12.6826
c[bb[bb[bbnnnnnbbbb]bb]ccc	chr5:149737166-149737510(+)$1	344	104	130	11.4872
===========lll===========c	chr14:23938811-23939038(+)$1	227	173	199	9.5071
ggggggg[bbnnnnnbb]gggggggB	chrX:151142986-151143249(-)$1	263	112	138	12.6868

#otherMatches

#Seq PSSM
GCGCGAGUGGUACGUCCUCUCUCCGC	chr17:46048626-46048844(+)$1	218	40	66	13.5299
GGUUUCACGUCUUGAACGUGCACCGG	chr6:35888149-35888406(-)$1	257	222	248	12.6513
AGGAGCUGGUAAGAAGCCGGCGGAGU	chr1:11866259-11866509(+)$1	250	139	165	12.6874
AGUUCUUGGACUUCUUCUGGGACAUU	chr17:4458472-4458761(-)$1	289	242	268	12.8579
UCGCUAAGGAGUGCGUCACAGUGCGC	chr1:40626959-40627253(+)$1	294	15	41	10.8642
GCAAGGCAGAAGCUGUCUGUGCUGCU	chr1:162762348-162762578(+)$1	230	180	206	12.7065
UCCUGUGGGUCUGUAGGUUAAGGGAG	chr11:27528158-27528416(-)$1	258	88	114	12.6534
GGGGGUGGCAGGGGGUGGUGCGCCUG	chr10:134145079-134145446(-)$1	367	43	69	12.5473
GACCACGGCUAGAUAGGCCGCCGGCC	chr22:29137974-29138280(+)$1	306	81	107	11.3813
ACCGAACAGCUGGACGCUCUGGGUUG	chr19:10812079-10812368(+)$1	289	231	257	11.6814
GCCGCGGGGGACCGCCCUUCGCCUUC	chr17:56084305-56084591(-)$1	286	241	267	11.7953
CGAGGAGUGCGUCAAGGACUCCCCGC	chr1:1243040-1243406(-)$1	366	225	251	12.2518
ACCAAUGAGGUGCUUCUUCCGGUUUU	chrX:69353683-69353961(+)$1	278	7	33	12.5405
UGGCGCCCGCGGCAGGCGGCGGCCAU	chr1:3566396-3566721(-)$1	325	134	160	12.0576
CGCAUUCUCGGGGGGCGAGGACGCCU	chr19:5719784-5720053(-)$1	269	140	166	11.7440
GGGAGGGGGCGCGUAGCCCGAGCCCC	chr15:23086149-23086458(-)$1	309	96	122	12.6117
CCCAGCCGGGGGAGACCCGGCGGGCC	chr8:23104054-23104354(+)$1	300	183	209	12.9161
UCAGCCAGGCGGGAAGCGCUGGUGUU	chr9:131418710-131419056(-)$1	346	79	105	12.7885
AGUGUGCUUUGAGUAGAAGCUGCACU	chr16:67281196-67281507(-)$1	311	123	149	11.7043
CGCCAGGGGCUCCGUGCCUCUGCAAC	chrX:54209430-54209731(-)$1	301	267	293	12.8579
AGGAGCUGGUAAGAAGCCGGCGGAGU	chr1:11866189-11866459(+)$1	270	209	235	12.6874
CGGCAGCGGGGAUUACCCUUUGUCUU	chr11:61197490-61197764(+)$1	274	199	225	12.7652
GGGGGCCACGCCCUCCGGGCCCUGGG	chr20:37590896-37591153(+)$1	257	35	61	12.4706
CUCAUCGGGACUUCAUCUCGGUGACG	chr9:139981330-139981642(+)$1	312	254	280	13.6710
UCAUCGUGGUACAGCAGCAGGAUGGC	chr18:2960655-2960949(-)$1	294	208	234	12.8509
UAGCCGGGGCGUCAGGCUCUGUGUUG	chr1:29557182-29557539(-)$1	357	83	109	11.3998
GCCAGCGGUGGGCAGCGCUGCUGGGA	chr3:122785919-122786153(+)$1	234	67	93	12.7399
ACGGAGCGGUGUGGGGCCGCGUGCGA	chr17:79213048-79213326(+)$1	278	125	151	12.2851
UCAACGGUGUGUACAGGACCACGGAG	chr19:11350265-11350526(+)$1	261	193	219	14.1361
GCGCGAGUGGUACGUCCUCUCUCCGC	chr17:46048538-46048801(+)$1	263	128	154	12.5917
AGGCCAGGGCCGCCCGCCCAACCUGG	chr12:56321427-56321787(-)$1	360	198	224	11.9844
ACGCGUCCCUGGAGAAGGUCCGUGCC	chr16:15068820-15069163(+)$1	343	240	266	11.7352
GGCGGCGGCCACUGGGGCGCGACCGU	chr18:51795828-51796147(+)$1	319	275	301	12.6265
AUGGAGGCGGAGCCGCCGCUCUACCC	chr11:67771369-67771676(-)$1	307	163	189	11.2723
CCUGGCCGAGAACGACUGGGAGAUGG	chr6:24666909-24667198(-)$1	289	245	271	12.7037
ACGCUGGAGCAUCCCGCUCUGGUGCC	chr14:68162300-68162578(-)$1	278	116	142	13.5281
UAGCGACGGCAGCAAGGUGUCGGUGU	chr19:18632630-18632970(-)$1	340	155	181	12.2518
ACGGCACGGUCAUGAGCUGCGCCGUC	chr11:66384048-66384295(+)$1	247	216	242	10.9835
GUCCCCAGUGGCGAGCACUGGCCCGA	chr15:65321725-65322033(-)$1	308	149	175	13.3087
GCUGACUAGCggggagggagugggca	chr7:100136897-100137155(+)$1	258	43	69	12.6286
UCCCGACACGGCUCACGAUGCGCGGC	chr16:2570305-2570561(+)$1	256	137	163	12.1278
GCAGGGAGCGUGAGUCGCCAUGGCGA	chr6:30640556-30640865(-)$1	309	228	254	13.2654
CGUGGAGGCGGGAGGCGGCUUCGCGG	chr1:226111639-226111957(-)$1	318	221	247	13.7472
CGGAACACGAGAGAAUCUGCUUCCGG	chr14:78174185-78174463(-)$1	278	68	94	12.9733
CUUCGGGGAGGAGGACGCUGAGGAGG	chr16:2587919-2588235(+)$1	316	117	143	12.6017
GGCCAUGGCGGAGCACGCCCCUCGCC	chr3:38388187-38388524(+)$1	337	168	194	12.9998
AUUCAGGGUCCUGAAGUCUUUGCUCU	chr17:72771696-72771952(-)$1	256	64	90	12.9421
UCGGGGUUUAUUGAUUGAAUUCCGCC	chr15:69112984-69113257(-)$1	273	106	132	13.5565
AGCCGGGCUCGGCCUGGGCCUGGCCG	chr1:179051102-179051458(+)$1	356	264	290	13.4115
AGCCGGCUUCGGUAAGAAGGGCCGGU	chr7:148823161-148823466(-)$1	305	168	194	11.9915
CGCGCUCGUCUGAAUGGCGUUUGGCG	chr11:126138947-126139299(+)$1	352	57	83	12.1565
ACGUCCAGCUUCCCCAGCAggcggcc	chr2:169103770-169104038(-)$1	268	121	147	11.0597
GGCGGGACCAGAGAUUGGCCAUUCCG	chr2:190306099-190306404(+)$1	305	80	106	13.8969
GGGAGGCAGCCGCGCGCAGCGAGCCG	chr3:101568257-101568621(+)$1	364	147	173	13.0758
GGGCAGCGGGAUGAGCCUGCAGGCCA	chr6:43028961-43029284(+)$1	323	130	156	12.6826
CGGGGCGUGCAGGUAGCCGGCCGGCC	chr5:149737166-149737510(+)$1	344	104	130	11.4872
UUUGCCUUCAGCGGCUGGAGGCAAAC	chr14:23938811-23939038(+)$1	227	173	199	9.5071
CGCGACCUCCGCGCAGGUGGUCGCGC	chrX:151142986-151143249(-)$1	263	112	138	12.6868

#DB
(((.(((.((.....)).)))..)))	chr17:46048626-46048844(+)$1	1	40	66	13.5299
(((..(((((.....))))).)))))	chr6:35888149-35888406(-)$1	1	222	248	12.6513
(...((((((.....))))))....)	chr1:11866259-11866509(+)$1	1	139	165	12.6874
(..(((((((.....)))))))..))	chr17:4458472-4458761(-)$1	1	242	268	12.8579
.((((...((.....))..)))))))	chr1:40626959-40627253(+)$1	1	15	41	10.8642
(((..(((((.....)))))..))))	chr1:162762348-162762578(+)$1	1	180	206	12.7065
((((.(((.(.....).))).)))))	chr11:27528158-27528416(-)$1	1	88	114	12.6534
(((.(((.((.....)).))).))))	chr10:134145079-134145446(-)$1	1	43	69	12.5473
(.((.(((((.....)))))..)).)	chr22:29137974-29138280(+)$1	1	81	107	11.3813
(((.(..(((.....))).).)))))	chr19:10812079-10812368(+)$1	1	231	257	11.6814
)).(((((((.....)))))))((((	chr17:56084305-56084591(-)$1	1	241	267	11.7953
((.(((((.(.....).))))).)).	chr1:1243040-1243406(-)$1	1	225	251	12.2518
(((...((((.....)))).))))).	chrX:69353683-69353961(+)$1	1	7	33	12.5405
((((..((((.....))))..)))))	chr1:3566396-3566721(-)$1	1	134	160	12.0576
((..((((((.....)))))))))))	chr19:5719784-5720053(-)$1	1	140	166	11.7440
(((...((((.....))))...))))	chr15:23086149-23086458(-)$1	1	96	122	12.6117
((..((((((.....)))))))))))	chr8:23104054-23104354(+)$1	1	183	209	12.9161
...(((((((.....)).)))))...	chr9:131418710-131419056(-)$1	1	79	105	12.7885
((((((((((.....))))).)))))	chr16:67281196-67281507(-)$1	1	123	149	11.7043
((.(((((((.....)))))))....	chrX:54209430-54209731(-)$1	1	267	293	12.8579
(...((((((.....))))))....)	chr1:11866189-11866459(+)$1	1	209	235	12.6874
.(((((.(((.....))).))))).)	chr11:61197490-61197764(+)$1	1	199	225	12.7652
.((((((.((.....)))))))))))	chr20:37590896-37591153(+)$1	1	35	61	12.4706
.(((((((((.....))))))))).)	chr9:139981330-139981642(+)$1	1	254	280	13.6710
(((((.((.(.....).)).))))))	chr18:2960655-2960949(-)$1	1	208	234	12.8509
((((((((((.....)))))).))))	chr1:29557182-29557539(-)$1	1	83	109	11.3998
.(((((((((.....)))))))))..	chr3:122785919-122786153(+)$1	1	67	93	12.7399
.((.((((((.....))))).).)).	chr17:79213048-79213326(+)$1	1	125	151	12.2851
((...(((.(.....).)))...)))	chr19:11350265-11350526(+)$1	1	193	219	14.1361
(((.(((.((.....)).)))..)))	chr17:46048538-46048801(+)$1	1	128	154	12.5917
(((...((((.....))))..)))))	chr12:56321427-56321787(-)$1	1	198	224	11.9844
.((((..(((.....)))..))))))	chr16:15068820-15069163(+)$1	1	240	266	11.7352
((((((((((.....))).)).))))	chr18:51795828-51796147(+)$1	1	275	301	12.6265
.(((((.(((.....))))))))(((	chr11:67771369-67771676(-)$1	1	163	189	11.2723
((...((.((.....)).))....))	chr6:24666909-24667198(-)$1	1	245	271	12.7037
.(((((((((.....)))))))))..	chr14:68162300-68162578(-)$1	1	116	142	13.5281
((.(((((.(.....).))))).)).	chr19:18632630-18632970(-)$1	1	155	181	12.2518
(((((.((((.....)))).))))).	chr11:66384048-66384295(+)$1	1	216	242	10.9835
(((.((((((.....))))))...))	chr15:65321725-65322033(-)$1	1	149	175	13.3087
(((.(((..(.....)..))).))))	chr7:100136897-100137155(+)$1	1	43	69	12.6286
(((((.((((.....)).))..))).	chr16:2570305-2570561(+)$1	1	137	163	12.1278
((...(.(((.....))))...))..	chr6:30640556-30640865(-)$1	1	228	254	13.2654
(((((((.((.....)).))))))).	chr1:226111639-226111957(-)$1	1	221	247	13.7472
(((((((.((.....)))).))))))	chr14:78174185-78174463(-)$1	1	68	94	12.9733
((((..((.(.....).))...))))	chr16:2587919-2588235(+)$1	1	117	143	12.6017
(((...((((.....))))....)))	chr3:38388187-38388524(+)$1	1	168	194	12.9998
...(((((.(.....).)))))...)	chr17:72771696-72771952(-)$1	1	64	90	12.9421
.(((((((((.....)))))))))))	chr15:69112984-69113257(-)$1	1	106	132	13.5565
.(((((((((.....)))))))))))	chr1:179051102-179051458(+)$1	1	264	290	13.4115
.(((..((((.....)))))))))))	chr7:148823161-148823466(-)$1	1	168	194	11.9915
((((((((((.....))))...))))	chr11:126138947-126139299(+)$1	1	57	83	12.1565
.((.((.(((.....))).)))))).	chr2:169103770-169104038(-)$1	1	121	147	11.0597
((((((((((.....)))...)))))	chr2:190306099-190306404(+)$1	1	80	106	13.8969
((...((.((.....)).))...)))	chr3:101568257-101568621(+)$1	1	147	173	13.0758
((((.(((((.....)))))..))).	chr6:43028961-43029284(+)$1	1	130	156	12.6826
(.((.((.((.....)))).)).)))	chr5:149737166-149737510(+)$1	1	104	130	11.4872
(((((((((((...)))))))))))(	chr14:23938811-23939038(+)$1	1	173	199	9.5071
(((((((.((.....)).))))))))	chrX:151142986-151143249(-)$1	1	112	138	12.6868

#PSSM
e : 0.13	g : 0.12	[ : 0.12	f : 0.10	d : 0.10	b : 0.08	c : 0.06	h : 0.06	! : 0.05	i : 0.03	# : 0.03	" : 0.01	+ : 0.01	: : 0.01	= : 0.01	
e : 0.15	d : 0.13	g : 0.12	i : 0.12	f : 0.10	b : 0.10	h : 0.06	" : 0.05	c : 0.05	[ : 0.03	! : 0.01	# : 0.01	= : 0.01	
e : 0.13	" : 0.12	i : 0.12	g : 0.10	f : 0.10	d : 0.08	b : 0.06	c : 0.06	! : 0.05	[ : 0.05	h : 0.03	: : 0.01	# : 0.01	= : 0.01	
" : 0.17	[ : 0.13	g : 0.13	e : 0.13	i : 0.10	f : 0.08	! : 0.06	d : 0.05	c : 0.05	b : 0.03	= : 0.01	
f : 0.15	g : 0.13	" : 0.13	e : 0.12	i : 0.10	c : 0.08	! : 0.08	[ : 0.06	d : 0.03	a : 0.03	b : 0.01	= : 0.01	
e : 0.20	f : 0.13	c : 0.10	g : 0.10	b : 0.10	" : 0.08	! : 0.08	i : 0.08	[ : 0.05	a : 0.01	= : 0.01	
e : 0.17	d : 0.13	b : 0.13	f : 0.12	c : 0.10	g : 0.10	i : 0.08	[ : 0.06	! : 0.03	" : 0.01	= : 0.01	
[ : 0.17	e : 0.17	c : 0.17	d : 0.13	f : 0.10	i : 0.08	g : 0.05	b : 0.05	" : 0.01	! : 0.01	= : 0.01	
b : 0.22	c : 0.13	d : 0.13	[ : 0.12	e : 0.10	f : 0.10	i : 0.08	g : 0.05	! : 0.01	= : 0.01	
b : 0.22	a : 0.13	c : 0.13	d : 0.13	e : 0.10	f : 0.10	i : 0.08	g : 0.05	= : 0.01	
n : 0.98	= : 0.01	
n : 0.98	l : 0.01	
n : 0.98	l : 0.01	
n : 0.98	l : 0.01	
n : 0.98	= : 0.01	
b : 0.22	a : 0.13	c : 0.13	d : 0.13	e : 0.10	f : 0.10	i : 0.08	g : 0.05	= : 0.01	
b : 0.22	c : 0.13	d : 0.13	] : 0.12	e : 0.10	f : 0.10	i : 0.08	g : 0.05	2 : 0.01	= : 0.01	
c : 0.17	] : 0.15	e : 0.15	d : 0.13	f : 0.12	i : 0.08	b : 0.06	g : 0.05	2 : 0.03	= : 0.01	
e : 0.18	d : 0.13	f : 0.12	b : 0.12	c : 0.10	g : 0.08	i : 0.08	] : 0.06	2 : 0.03	a : 0.01	3 : 0.01	= : 0.01	
e : 0.20	c : 0.12	f : 0.12	g : 0.08	] : 0.08	3 : 0.08	i : 0.08	b : 0.08	2 : 0.05	d : 0.01	a : 0.01	4 : 0.01	= : 0.01	
e : 0.13	f : 0.12	3 : 0.12	g : 0.10	2 : 0.10	i : 0.10	c : 0.08	] : 0.08	b : 0.05	d : 0.03	4 : 0.03	= : 0.01	
e : 0.17	g : 0.13	3 : 0.12	2 : 0.10	i : 0.10	4 : 0.06	f : 0.06	] : 0.06	d : 0.05	b : 0.03	h : 0.01	a : 0.01	c : 0.01	= : 0.01	
e : 0.17	d : 0.10	f : 0.10	g : 0.10	i : 0.10	4 : 0.08	] : 0.06	3 : 0.06	2 : 0.05	b : 0.05	h : 0.03	c : 0.03	= : 0.01	
e : 0.15	g : 0.13	d : 0.12	b : 0.10	i : 0.10	f : 0.08	4 : 0.06	h : 0.06	c : 0.06	3 : 0.05	2 : 0.01	= : 0.01	
g : 0.13	e : 0.13	f : 0.10	d : 0.10	h : 0.08	b : 0.08	c : 0.08	4 : 0.06	] : 0.05	3 : 0.03	2 : 0.03	i : 0.03	a : 0.01	= : 0.01	
c : 0.13	] : 0.13	g : 0.10	e : 0.10	f : 0.10	d : 0.10	h : 0.08	b : 0.05	B : 0.03	4 : 0.03	2 : 0.03	i : 0.03	3 : 0.01	: : 0.01	

#score	723.6214144631259
#seq	58
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_transcript_m2_run2.txt

#BEAR
"cccqqqqqqqqccc]	chr20:60640260-60640607(-)$1	347	292	308	13.8588
:cccqqqqqqqqcccf	chr7:5396705-5396952(-)$1	247	176	192	12.7650
[cccqqqqqqqqccc]	chr10:95360612-95360897(-)$1	285	62	78	13.9434
ddddqqqqqqqqdddd	chr19:11105402-11105704(+)$1	302	114	130	14.4404
a[bbqqqqqqqqbb]a	chr16:22385523-22385861(-)$1	338	267	283	12.2526
gg[aqqqqqqqqa]gg	chr2:232577051-232577316(+)$1	265	56	72	13.1148
eeeeqqqqqqqqeeee	chr6:114180844-114181108(+)$1	264	1	17	13.1697
eeeeqqqqqqqqeeee	chr16:591181-591566(+)$1	385	343	359	13.1697
ffffqqqqqqqqffff	chr3:98620099-98620490(-)$1	391	56	72	12.1767
eeeaqqqqqqqqa]ee	chr19:878336-878625(-)$1	289	200	216	13.2525
[cccqqqqqqqqcccc	chr20:42086703-42086923(+)$1	220	66	82	13.9115
ccccqqqqqqqqccc:	chr17:39845204-39845466(+)$1	262	98	114	12.9557
cc[aqqqqqqqqa]cc	chr4:13338733-13338980(+)$1	247	16	32	13.4184
eeeeqqqqqqqqeeee	chr12:7024844-7025099(+)$1	255	178	194	13.1697
ddddqqqqqqqqdddd	chr11:2152617-2152822(-)$1	205	152	168	14.4404
ddddqqqqqqqqdddd	chr11:2152545-2152781(-)$1	236	111	127	14.4404
ddddqqqqqqqqdddd	chr17:48823044-48823465(+)$1	421	250	266	14.4404
[cccqqqqqqqqccc]	chr21:34143592-34143958(-)$1	366	162	178	13.9434
ddddqqqqqqqqdddd	chr20:35024784-35025168(+)$1	384	145	161	14.4404
ggggqqqqqqqqgggg	chr19:55628673-55629013(-)$1	340	302	318	12.9920
[cccqqqqqqqqccc]	chr22:39916656-39916947(+)$1	291	33	49	13.9434
ddddqqqqqqqqdddd	chr20:60718832-60719109(+)$1	277	88	104	14.4404
%cccqqqqqqqqccc6	chr19:24187187-24187408(-)$1	221	182	198	12.7483
ggggqqqqqqqqgggg	chr2:54856094-54856353(+)$1	259	107	123	12.9920
ddddqqqqqqqqdddd	chr11:2152607-2152815(-)$1	208	145	161	14.4404
[cccqqqqqqqqccc3	chr20:62624682-62624938(+)$1	256	182	198	13.9394
ddddqqqqqqqqdddd	chr11:2152581-2152786(-)$1	205	116	132	14.4404
!!bbqqqqqqqqbb]c	chr19:18717373-18717707(-)$1	334	92	108	12.4593
ddddqqqqqqqqdddd	chr22:36685224-36685444(-)$1	220	187	203	14.4404
[cccqqqqqqqqccc2	chr20:3175857-3176095(-)$1	238	151	167	13.7176
b[bbqqqqqqqqbb]b	chr14:32546304-32546562(+)$1	258	159	175	11.7544
dd[aqqqqqqqqa]dd	chr7:2671511-2671814(+)$1	303	283	299	13.8374
ddddqqqqqqqqdddd	chr11:2153201-2153405(-)$1	204	38	54	14.4404
ffffqqqqqqqqffff	chr17:36868855-36869144(+)$1	289	31	47	12.1767
b[bbqqqqqqqqbb]b	chr10:98346576-98346890(-)$1	314	250	266	11.7544
ddddqqqqqqqqdddd	chr9:35731968-35732270(-)$1	302	106	122	14.4404
ddddqqqqqqqqdddd	chr1:146756899-146757194(+)$1	295	254	270	14.4404
ddddqqqqqqqqdddd	chr11:2152462-2152671(-)$1	209	1	17	14.4404
ffffqqqqqqqqffff	chr20:57465135-57465422(+)$1	287	11	27	12.1767
dd[aqqqqqqqqaddd	chr2:232327809-232328056(-)$1	247	183	199	14.0682
iiiiqqqqqqqqiiii	chr11:2151874-2152079(-)$1	205	99	115	13.0119
"cccqqqqqqqqccc3	chr11:10529796-10530050(-)$1	254	7	23	13.8548
ccbbqqqqqqqqbb]c	chr15:90328470-90328821(-)$1	351	265	281	12.4802
ddddqqqqqqqqdddd	chr7:98997868-98998148(-)$1	280	245	261	14.4404
ddddqqqqqqqqdddd	chr19:878825-879126(-)$1	301	183	199	14.4404
eeeeqqqqqqqqeeee	chr21:47563020-47563289(-)$1	269	188	204	13.1697
ecccqqqqqqqqccc]	chr11:130011316-130011559(+)$1	243	75	91	13.8886
ddddqqqqqqqqdddd	chr16:70719674-70719918(-)$1	244	166	182	14.4404
!cccqqqqqqqqccc3	chr19:1020848-1021214(-)$1	366	181	197	13.9603
cc[aqqqqqqqqa]cc	chr1:169075586-169075865(+)$1	279	177	193	13.4184
ddddqqqqqqqqdddd	chr7:2697819-2698026(+)$1	207	147	163	14.4404
ddddqqqqqqqqdddd	chr11:120081818-120082083(+)$1	265	83	99	14.4404
eeeeqqqqqqqqeeee	chr1:19433274-19433558(-)$1	284	225	241	13.1697
ddddqqqqqqqqdddd	chr17:80190703-80190977(+)$1	274	255	271	14.4404
[cccqqqqqqqqccc]	chr17:16945976-16946284(+)$1	308	28	44	13.9434
!cccqqqqqqqqccc4	chr11:57094066-57094425(-)$1	359	11	27	13.9700
:cccqqqqqqqqccc:	chr22:36681610-36681839(-)$1	229	14	30	12.0240
eeeeqqqqqqqqeeee	chr20:43029842-43030139(+)$1	297	251	267	13.1697
ddddqqqqqqqqdddd	chr20:32436228-32436511(+)$1	283	153	169	14.4404
e!!aqqqqqqqqa22e	chr2:232326150-232326383(-)$1	233	71	87	12.6777
ddddqqqqqqqqdddd	chr11:2153159-2153379(-)$1	220	12	28	14.4404
ddddqqqqqqqqdddd	chr11:2152622-2152828(-)$1	206	158	174	14.4404
icccqqqqqqqqccc8	chr3:195802067-195802336(-)$1	269	84	100	13.4172
ddddqqqqqqqqdddd	chr3:167750216-167750601(-)$1	385	79	95	14.4404
ddddqqqqqqqqdddd	chr11:2152602-2152807(-)$1	205	137	153	14.4404
ddddqqqqqqqqdddd	chr2:102472332-102472605(+)$1	273	49	65	14.4404
eeeeqqqqqqqqeeee	chr11:67888649-67888929(-)$1	280	224	240	13.1697

#otherMatches

#Seq PSSM
uggcccUGGCAAgccc	chr20:60640260-60640607(-)$1	347	292	308	13.8588
AUCGAAAACUAGCGGG	chr7:5396705-5396952(-)$1	247	176	192	12.7650
GCCGGGCACUGACGGA	chr10:95360612-95360897(-)$1	285	62	78	13.9434
GCAUUCUCCAGCAUGC	chr19:11105402-11105704(+)$1	302	114	130	14.4404
AAGGAGGACGAGCCGU	chr16:22385523-22385861(-)$1	338	267	283	12.2526
CAGUAGGAGGGAAGUG	chr2:232577051-232577316(+)$1	265	56	72	13.1148
CUCUGCCCCUUAGGAG	chr6:114180844-114181108(+)$1	264	1	17	13.1697
GAGCGCCUCCCAGUUC	chr16:591181-591566(+)$1	385	343	359	13.1697
CCUCCGCGGCUCGAGG	chr3:98620099-98620490(-)$1	391	56	72	12.1767
ggUGGACAUUGACAAC	chr19:878336-878625(-)$1	289	200	216	13.2525
CUCAAAAAUGGGUGAG	chr20:42086703-42086923(+)$1	220	66	82	13.9115
CAGAACCUCCACUCUU	chr17:39845204-39845466(+)$1	262	98	114	12.9557
CUGGAGAAGGAACGAG	chr4:13338733-13338980(+)$1	247	16	32	13.4184
GGAGAUCCUGGACUCC	chr12:7024844-7025099(+)$1	255	178	194	13.1697
ugcgcacacacacgca	chr11:2152617-2152822(-)$1	205	152	168	14.4404
ugcgcacacacacgca	chr11:2152545-2152781(-)$1	236	111	127	14.4404
CAUCAGACAGAAGAUG	chr17:48823044-48823465(+)$1	421	250	266	14.4404
UCGCCGCCUUCCGCGC	chr21:34143592-34143958(-)$1	366	162	178	13.9434
gugcacacacacgcac	chr20:35024784-35025168(+)$1	384	145	161	14.4404
GCGUCUGAUGCUgcgc	chr19:55628673-55629013(-)$1	340	302	318	12.9920
GGCCUUUGCAGCGGCG	chr22:39916656-39916947(+)$1	291	33	49	13.9434
GGUUACGCAGCAAACC	chr20:60718832-60719109(+)$1	277	88	104	14.4404
CUGAUCAUCAUUUCAA	chr19:24187187-24187408(-)$1	221	182	198	12.7483
UCUGGGAGAUGGCAGA	chr2:54856094-54856353(+)$1	259	107	123	12.9920
ugcgcacacacacgca	chr11:2152607-2152815(-)$1	208	145	161	14.4404
UGCGGUUUCUAACGCU	chr20:62624682-62624938(+)$1	256	182	198	13.9394
ugcgcacacacacgca	chr11:2152581-2152786(-)$1	205	116	132	14.4404
CUGCUCAGACUUGCUC	chr19:18717373-18717707(-)$1	334	92	108	12.4593
GGCUCUGUCGCUGGCC	chr22:36685224-36685444(-)$1	220	187	203	14.4404
ACCUGAAACUGAAGGA	chr20:3175857-3176095(-)$1	238	151	167	13.7176
GGCGGGGGGAGGUGGC	chr14:32546304-32546562(+)$1	258	159	175	11.7544
CGGGGUCAGCUACGCG	chr7:2671511-2671814(+)$1	303	283	299	13.8374
AAAGCACUCAUACUUU	chr11:2153201-2153405(-)$1	204	38	54	14.4404
UUUGUCCUCGCCCAGA	chr17:36868855-36869144(+)$1	289	31	47	12.1767
cggGAGGAGGAGUCGG	chr10:98346576-98346890(-)$1	314	250	266	11.7544
UGUCGAAGGGAGGGCG	chr9:35731968-35732270(-)$1	302	106	122	14.4404
CAUAAGAAAAAGUAUG	chr1:146756899-146757194(+)$1	295	254	270	14.4404
ugcgcacacacacgca	chr11:2152462-2152671(-)$1	209	1	17	14.4404
UCCUAACAGACAAGGA	chr20:57465135-57465422(+)$1	287	11	27	12.1767
CUACAAAAUGGAGAGU	chr2:232327809-232328056(-)$1	247	183	199	14.0682
GGGUAGGAAGUGGUCC	chr11:2151874-2152079(-)$1	205	99	115	13.0119
ACUGACAAUUAACAGC	chr11:10529796-10530050(-)$1	254	7	23	13.8548
GCCCCCAUGCAAGGUG	chr15:90328470-90328821(-)$1	351	265	281	12.4802
GUGUCACGGGGAAUAC	chr7:98997868-98998148(-)$1	280	245	261	14.4404
ggccggggccggggcc	chr19:878825-879126(-)$1	301	183	199	14.4404
UUACAAGGCUGGGUGA	chr21:47563020-47563289(-)$1	269	188	204	13.1697
GGUCAUUGACGAGACU	chr11:130011316-130011559(+)$1	243	75	91	13.8886
GCGCUGCUCCCCGCGC	chr16:70719674-70719918(-)$1	244	166	182	14.4404
GGACACUUGCGGGUCG	chr19:1020848-1021214(-)$1	366	181	197	13.9603
GGACCAAAGAAAGCCC	chr1:169075586-169075865(+)$1	279	177	193	13.4184
AGGCGCACGACAGCCU	chr7:2697819-2698026(+)$1	207	147	163	14.4404
GCCCCCAACUUUGGGC	chr11:120081818-120082083(+)$1	265	83	99	14.4404
GAGGUAUAUCUUUCUC	chr1:19433274-19433558(-)$1	284	225	241	13.1697
UCCUGGAAGAUGGGGA	chr17:80190703-80190977(+)$1	274	255	271	14.4404
CGUGCAGCGAACCGCC	chr17:16945976-16946284(+)$1	308	28	44	13.9434
UGGUGACAGGGGACCU	chr11:57094066-57094425(-)$1	359	11	27	13.9700
CCCUGGCGUUAGAGGA	chr22:36681610-36681839(-)$1	229	14	30	12.0240
UUUGAGAAUGUGCAGG	chr20:43029842-43030139(+)$1	297	251	267	13.1697
CACCAACACCGAGGUG	chr20:32436228-32436511(+)$1	283	153	169	14.4404
AGAGgaugaggacgau	chr2:232326150-232326383(-)$1	233	71	87	12.6777
AAAGCACUCAUACUUU	chr11:2153159-2153379(-)$1	220	12	28	14.4404
ugcgcacacacacgca	chr11:2152622-2152828(-)$1	206	158	174	14.4404
AUGCCUUUUUCCGCAA	chr3:195802067-195802336(-)$1	269	84	100	13.4172
UCCAACAAGAAGUGGA	chr3:167750216-167750601(-)$1	385	79	95	14.4404
ugcgcacacacacgca	chr11:2152602-2152807(-)$1	205	137	153	14.4404
CAUCAUGAGAAAGAUG	chr2:102472332-102472605(+)$1	273	49	65	14.4404
GACUCUGAGCCUAGUC	chr11:67888649-67888929(-)$1	280	224	240	13.1697

#DB
.(((........))).	chr20:60640260-60640607(-)$1	1	292	308	13.8588
.(((........)))(	chr7:5396705-5396952(-)$1	1	176	192	12.7650
.(((........))).	chr10:95360612-95360897(-)$1	1	62	78	13.9434
((((........))))	chr19:11105402-11105704(+)$1	1	114	130	14.4404
(.((........)).)	chr16:22385523-22385861(-)$1	1	267	283	12.2526
((.(........).))	chr2:232577051-232577316(+)$1	1	56	72	13.1148
((((........))))	chr6:114180844-114181108(+)$1	1	1	17	13.1697
((((........))))	chr16:591181-591566(+)$1	1	343	359	13.1697
((((........))))	chr3:98620099-98620490(-)$1	1	56	72	12.1767
((((........).))	chr19:878336-878625(-)$1	1	200	216	13.2525
.(((........))))	chr20:42086703-42086923(+)$1	1	66	82	13.9115
)(((........))).	chr17:39845204-39845466(+)$1	1	98	114	12.9557
((.(........).))	chr4:13338733-13338980(+)$1	1	16	32	13.4184
((((........))))	chr12:7024844-7025099(+)$1	1	178	194	13.1697
((((........))))	chr11:2152617-2152822(-)$1	1	152	168	14.4404
((((........))))	chr11:2152545-2152781(-)$1	1	111	127	14.4404
((((........))))	chr17:48823044-48823465(+)$1	1	250	266	14.4404
.(((........))).	chr21:34143592-34143958(-)$1	1	162	178	13.9434
((((........))))	chr20:35024784-35025168(+)$1	1	145	161	14.4404
((((........))))	chr19:55628673-55629013(-)$1	1	302	318	12.9920
.(((........))).	chr22:39916656-39916947(+)$1	1	33	49	13.9434
((((........))))	chr20:60718832-60719109(+)$1	1	88	104	14.4404
.(((........))).	chr19:24187187-24187408(-)$1	1	182	198	12.7483
((((........))))	chr2:54856094-54856353(+)$1	1	107	123	12.9920
((((........))))	chr11:2152607-2152815(-)$1	1	145	161	14.4404
.(((........))).	chr20:62624682-62624938(+)$1	1	182	198	13.9394
((((........))))	chr11:2152581-2152786(-)$1	1	116	132	14.4404
..((........)).)	chr19:18717373-18717707(-)$1	1	92	108	12.4593
((((........))))	chr22:36685224-36685444(-)$1	1	187	203	14.4404
.(((........))).	chr20:3175857-3176095(-)$1	1	151	167	13.7176
(.((........)).)	chr14:32546304-32546562(+)$1	1	159	175	11.7544
((.(........).))	chr7:2671511-2671814(+)$1	1	283	299	13.8374
((((........))))	chr11:2153201-2153405(-)$1	1	38	54	14.4404
((((........))))	chr17:36868855-36869144(+)$1	1	31	47	12.1767
(.((........)).)	chr10:98346576-98346890(-)$1	1	250	266	11.7544
((((........))))	chr9:35731968-35732270(-)$1	1	106	122	14.4404
((((........))))	chr1:146756899-146757194(+)$1	1	254	270	14.4404
((((........))))	chr11:2152462-2152671(-)$1	1	1	17	14.4404
((((........))))	chr20:57465135-57465422(+)$1	1	11	27	12.1767
((.(........))))	chr2:232327809-232328056(-)$1	1	183	199	14.0682
((((........))))	chr11:2151874-2152079(-)$1	1	99	115	13.0119
.(((........))).	chr11:10529796-10530050(-)$1	1	7	23	13.8548
((((........)).)	chr15:90328470-90328821(-)$1	1	265	281	12.4802
((((........))))	chr7:98997868-98998148(-)$1	1	245	261	14.4404
((((........))))	chr19:878825-879126(-)$1	1	183	199	14.4404
((((........))))	chr21:47563020-47563289(-)$1	1	188	204	13.1697
((((........))).	chr11:130011316-130011559(+)$1	1	75	91	13.8886
((((........))))	chr16:70719674-70719918(-)$1	1	166	182	14.4404
.(((........))).	chr19:1020848-1021214(-)$1	1	181	197	13.9603
((.(........).))	chr1:169075586-169075865(+)$1	1	177	193	13.4184
((((........))))	chr7:2697819-2698026(+)$1	1	147	163	14.4404
((((........))))	chr11:120081818-120082083(+)$1	1	83	99	14.4404
((((........))))	chr1:19433274-19433558(-)$1	1	225	241	13.1697
((((........))))	chr17:80190703-80190977(+)$1	1	255	271	14.4404
.(((........))).	chr17:16945976-16946284(+)$1	1	28	44	13.9434
.(((........))).	chr11:57094066-57094425(-)$1	1	11	27	13.9700
.(((........))).	chr22:36681610-36681839(-)$1	1	14	30	12.0240
((((........))))	chr20:43029842-43030139(+)$1	1	251	267	13.1697
((((........))))	chr20:32436228-32436511(+)$1	1	153	169	14.4404
(..(........)..)	chr2:232326150-232326383(-)$1	1	71	87	12.6777
((((........))))	chr11:2153159-2153379(-)$1	1	12	28	14.4404
((((........))))	chr11:2152622-2152828(-)$1	1	158	174	14.4404
((((........))).	chr3:195802067-195802336(-)$1	1	84	100	13.4172
((((........))))	chr3:167750216-167750601(-)$1	1	79	95	14.4404
((((........))))	chr11:2152602-2152807(-)$1	1	137	153	14.4404
((((........))))	chr2:102472332-102472605(+)$1	1	49	65	14.4404
((((........))))	chr11:67888649-67888929(-)$1	1	224	240	13.1697

#PSSM
d : 0.40	e : 0.14	[ : 0.10	c : 0.05	g : 0.04	f : 0.04	! : 0.04	" : 0.02	: : 0.02	b : 0.02	i : 0.02	a : 0.01	% : 0.01	
d : 0.40	c : 0.29	e : 0.11	[ : 0.04	g : 0.04	f : 0.04	! : 0.02	i : 0.01	
d : 0.37	c : 0.25	e : 0.11	b : 0.07	[ : 0.07	f : 0.04	g : 0.02	i : 0.01	! : 0.01	
d : 0.37	c : 0.25	a : 0.10	e : 0.10	b : 0.07	f : 0.04	g : 0.02	i : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.37	c : 0.25	a : 0.10	e : 0.10	b : 0.07	f : 0.04	g : 0.02	i : 0.01	
d : 0.38	c : 0.25	e : 0.10	b : 0.07	] : 0.07	f : 0.04	g : 0.02	i : 0.01	2 : 0.01	
d : 0.40	c : 0.28	e : 0.11	] : 0.07	g : 0.04	f : 0.04	i : 0.01	2 : 0.01	
d : 0.40	e : 0.13	] : 0.08	c : 0.07	f : 0.05	g : 0.04	3 : 0.04	: : 0.02	b : 0.02	a : 0.01	6 : 0.01	2 : 0.01	i : 0.01	4 : 0.01	8 : 0.01	

#score	914.000826947041
#seq	67
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_UTR_m1_run1.txt

#BEAR
ggggggg[cccooooooccc333gggggggi	chr15:44063547-44063803(+)$1	256	21	52	17.5042
======="""cccmmmmccc===========	chr4:763959-764201(-)$1	242	174	205	12.3862
!!cccbb[cccooooooccc]bb]ccc22ff	chr17:58326668-58326983(-)$1	315	227	258	14.4405
ggggggg[cccooooooccc333ggggggg:	chr11:62283814-62284051(-)$1	237	5	36	16.4652
fffff"""cccoooooocccfffffffffff	chr15:40913964-40914222(+)$1	258	177	208	13.2590
============nnnnn============ee	chr3:160134046-160134300(+)$1	254	145	176	13.0038
e[bb!!cccrrrrrrrrrccc22bb]eeeee	chr1:241794975-241795223(-)$1	248	77	108	13.0554
ggiiiiiiiiiooooooiiiiiiiii>>>>>	chr4:761263-761517(-)$1	254	127	158	14.0361
ddd!!bb[cccoooooocccbb]dddd22ee	chr16:20693536-20693802(+)$1	266	70	101	13.6927
gg"""cccrrrrrrrrrccc4444ggggggg	chrX:106310310-106310558(-)$1	248	167	198	14.6047
hhhh"""bbrrrrrrrrrbb333hhhhhhhh	chr4:174253089-174253320(-)$1	231	72	103	14.0478
c[bb[cccbbaooooooa]bb]ccc]bbccc	chr3:160141303-160141538(+)$1	235	36	67	13.3296
hhhh"""bbrrrrrrrrrbb333hhhhhhhh	chr4:174253073-174253289(-)$1	216	41	72	14.0478

#otherMatches

#Seq PSSM
UGUUUCUUAGCUGCACUGUUUAUGGAAAUAC	chr15:44063547-44063803(+)$1	256	21	52	17.5042
CACAUAUGUAGCAUGCAUGUGUGUGUGUGCG	chr4:763959-764201(-)$1	242	174	205	12.3862
uuucucauguccccagugaucuguagacugc	chr17:58326668-58326983(-)$1	315	227	258	14.4405
UGGAACUAUACAGAUAGGUAAAGAGUUCCAA	chr11:62283814-62284051(-)$1	237	5	36	16.4652
UGAUAGAAAGACUGAACUCUUAUCAGGUGAA	chr15:40913964-40914222(+)$1	258	177	208	13.2590
AAAGAAAAAGAAGUAAGUUUUUUUUUUUUAU	chr3:160134046-160134300(+)$1	254	145	176	13.0038
CACGAAAAUUAGUCUAGCAUUGCCGGGGGUA	chr1:241794975-241795223(-)$1	248	77	108	13.0554
AGCUGCUUUUUAUCUAAAGGAAGCAGAAGAA	chr4:761263-761517(-)$1	254	127	158	14.0361
UUCACGGCUGUGAUCAGACACCAGGAGCUUG	chr16:20693536-20693802(+)$1	266	70	101	13.6927
UAAAAAACUAAUUAAAUGUUGAAAUAUUUCU	chrX:106310310-106310558(-)$1	248	167	198	14.6047
gaugaagaugaagaaUAAAUGGCUAUCCUUU	chr4:174253089-174253320(-)$1	231	72	103	14.0478
UAGUAGCUGACAACUUGGAUCAAGCCACAAG	chr3:160141303-160141538(+)$1	235	36	67	13.3296
gaugaagaugaagaaUAAAUGGCUAUCCUUU	chr4:174253073-174253289(-)$1	216	41	72	14.0478

#DB
(((((((.(((......)))...)))))))(	chr15:44063547-44063803(+)$1	1	21	52	17.5042
(((((((...(((....))))))))))))))	chr4:763959-764201(-)$1	1	174	205	12.3862
..(((((.(((......))).)).)))..))	chr17:58326668-58326983(-)$1	1	227	258	14.4405
(((((((.(((......)))...))))))).	chr11:62283814-62284051(-)$1	1	5	36	16.4652
(((((...(((......))))))))))))))	chr15:40913964-40914222(+)$1	1	177	208	13.2590
((((((((((((.....))))))))))))((	chr3:160134046-160134300(+)$1	1	145	176	13.0038
(.((..(((.........)))..)).)))))	chr1:241794975-241795223(-)$1	1	77	108	13.0554
(((((((((((......))))))))).....	chr4:761263-761517(-)$1	1	127	158	14.0361
(((..((.(((......))))).))))..))	chr16:20693536-20693802(+)$1	1	70	101	13.6927
((...(((.........)))....)))))))	chrX:106310310-106310558(-)$1	1	167	198	14.6047
((((...((.........))...))))))))	chr4:174253089-174253320(-)$1	1	72	103	14.0478
(.((.((((((......).)).))).)))))	chr3:160141303-160141538(+)$1	1	36	67	13.3296
((((...((.........))...))))))))	chr4:174253073-174253289(-)$1	1	41	72	14.0478

#PSSM
g : 0.30	= : 0.15	h : 0.15	! : 0.07	f : 0.07	e : 0.07	d : 0.07	c : 0.07	
g : 0.30	= : 0.15	[ : 0.15	h : 0.15	! : 0.07	f : 0.07	d : 0.07	
g : 0.15	= : 0.15	b : 0.15	h : 0.15	c : 0.07	f : 0.07	i : 0.07	d : 0.07	" : 0.07	
g : 0.15	= : 0.15	b : 0.15	h : 0.15	c : 0.07	f : 0.07	i : 0.07	! : 0.07	" : 0.07	
" : 0.23	g : 0.15	= : 0.15	! : 0.15	c : 0.07	f : 0.07	i : 0.07	[ : 0.07	
" : 0.23	g : 0.15	= : 0.15	b : 0.15	c : 0.15	! : 0.07	i : 0.07	
" : 0.23	c : 0.23	g : 0.15	= : 0.15	b : 0.15	i : 0.07	
[ : 0.30	c : 0.23	" : 0.15	b : 0.15	= : 0.07	i : 0.07	
c : 0.46	b : 0.23	" : 0.07	= : 0.07	i : 0.07	r : 0.07	
c : 0.38	r : 0.30	" : 0.07	= : 0.07	i : 0.07	b : 0.07	
c : 0.46	r : 0.30	= : 0.07	i : 0.07	a : 0.07	
o : 0.53	r : 0.30	c : 0.07	= : 0.07	
o : 0.53	r : 0.30	c : 0.07	n : 0.07	
o : 0.53	r : 0.30	m : 0.07	n : 0.07	
o : 0.53	r : 0.30	m : 0.07	n : 0.07	
o : 0.53	r : 0.30	m : 0.07	n : 0.07	
o : 0.53	r : 0.30	m : 0.07	n : 0.07	
c : 0.53	r : 0.23	= : 0.07	i : 0.07	a : 0.07	
c : 0.61	b : 0.15	= : 0.07	i : 0.07	] : 0.07	
c : 0.61	b : 0.23	= : 0.07	i : 0.07	
3 : 0.30	= : 0.15	b : 0.15	] : 0.07	f : 0.07	c : 0.07	i : 0.07	4 : 0.07	
3 : 0.30	= : 0.15	b : 0.15	f : 0.07	2 : 0.07	i : 0.07	4 : 0.07	] : 0.07	
3 : 0.30	= : 0.15	b : 0.07	f : 0.07	2 : 0.07	i : 0.07	] : 0.07	4 : 0.07	c : 0.07	
g : 0.15	= : 0.15	h : 0.15	] : 0.07	f : 0.07	b : 0.07	i : 0.07	d : 0.07	4 : 0.07	c : 0.07	
g : 0.23	= : 0.15	c : 0.15	h : 0.15	f : 0.07	b : 0.07	i : 0.07	d : 0.07	
g : 0.23	= : 0.15	] : 0.15	h : 0.15	c : 0.07	f : 0.07	i : 0.07	d : 0.07	
g : 0.23	= : 0.15	h : 0.15	c : 0.07	f : 0.07	e : 0.07	> : 0.07	d : 0.07	b : 0.07	
g : 0.23	= : 0.15	2 : 0.15	h : 0.15	f : 0.07	e : 0.07	> : 0.07	b : 0.07	
g : 0.23	= : 0.15	2 : 0.15	h : 0.15	f : 0.07	e : 0.07	> : 0.07	c : 0.07	
g : 0.23	e : 0.23	f : 0.15	h : 0.15	= : 0.07	> : 0.07	c : 0.07	
e : 0.23	f : 0.15	h : 0.15	i : 0.07	= : 0.07	: : 0.07	> : 0.07	g : 0.07	c : 0.07	

#score	183.87368529789234
#seq	13
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_CDS_m1_run2.txt

#BEAR
ccc!!ggggggg[ccc^^^^^^^^^^^^^^^^^^ccc22	chr13:29246424-29246670(+)$1	246	42	81	11.1608
]bbggggggg[a[ddddoooooodddd]a]ggggggg::	chr7:127724730-127724933(+)$1	203	96	135	12.8497
==========bb[ddddoooooodddd333bb333====	chr16:29708418-29708728(+)$1	310	111	150	17.5191
fffff####ccc!!bboooooobbcccffffff]a]ccc	chrX:131524803-131525104(-)$1	301	28	67	13.3768
eee$$$$$ccc!!cccqqqqqqqqccc22ccc4444eee	chr2:207007313-207007526(-)$1	213	65	104	11.4179
ddd!!ccc[bbccceeeeellleeeee]ccc22bb]ccc	chrX:153226935-153227181(-)$1	246	3	42	10.8820
!!bb"""ccc[cccnnnnnccc]ccc4444bb22ccc44	chr16:70287835-70288041(-)$1	206	51	90	10.7069
ccc!!eeeee!!eeeeennnnneeeee]eeeee]ccc22	chr5:150512554-150512783(-)$1	229	113	152	11.6586
ccc!!ccc[ccc[fffffflllffffff]ccc22ccc22	chr17:5341352-5341663(-)$1	311	219	258	12.6739
iiiiiiii[ccc!!cccpppppppccc22ccc]iiiiii	chr2:69597072-69597336(-)$1	264	65	104	12.0064
!!ccc####bb"""cccpppppppccc333bb22ccccc	chr19:41809921-41810203(+)$1	282	220	259	13.0485
[eeeee"""ccc!!bb"""aooooooa333bb22ccc33	chr22:31816245-31816512(+)$1	267	119	158	15.1716
f[a[dddd[ccc"""bboooooobb4444ccc]dddd]a	chr11:71725342-71725631(-)$1	289	172	211	15.0613
hdddd!!eeeee[ddddoooooodddd]eeeee333ddd	chr7:5359928-5360150(-)$1	222	149	188	13.5146
!eeeeeccc####eeeeeooooooeeeeeccc22eeeee	chr14:23946308-23946646(+)$1	338	216	255	13.7435
::==========!!cccooooooccc22==========:	chr1:227149053-227149305(+)$1	252	32	71	14.5975
#dddd[a!!bb[bb[bboooooobbbb]bb22adddd33	chr4:187516742-187516990(-)$1	248	101	140	12.1708
"ccc[bbcccbbccc[bbnnnnnbb]ccc]bb]ccc333	chrX:70349482-70349786(+)$1	304	21	60	11.1331
=========="""cccwwwwwwwwwwwwwwccc22====	chr17:66521793-66522114(+)$1	321	159	198	11.6107
ffff"""==========oooooo==========]fffff	chr10:106019343-106019630(+)$1	287	177	216	15.8598
gggggg!!eeeee[cccooooooccc]eeeee22ggggg	chr9:33056789-33057062(-)$1	273	69	108	14.9405
ffff[ccc####eeeeeooooooeeeee333ccc]ffff	chr11:61081732-61082041(-)$1	309	9	48	14.6907
ffffff!!==========nnnnn==========]fffff	chr1:46032440-46032671(+)$1	231	179	218	11.9694
ccc"""bb[a[bb[ddddnnnnndddd22bb]a]bb333	chrX:77380727-77380966(+)$1	239	4	43	12.3092
dd[iiiiiiiii!!cccooooooccciiiiiiiiidddd	chr2:54871432-54871696(+)$1	264	181	220	15.4661
bb[bb!!ccc!!a[eeeeeooooooeeeee]a22ccc22	chr20:47739593-47739861(-)$1	268	169	208	13.5313
[a$$$$$dddd[eeeeeooooooeeeeedddd22a]ccc	chr1:40533237-40533487(+)$1	250	183	222	13.6648
[ggggggg!!ccc[cccqqqqqqqqccc]ccc22ggggg	chr1:39757479-39757768(+)$1	289	141	180	11.6961
ddd[bb####a[ddddoooooodddd]a333bb]dddd4	chr10:75551920-75552211(+)$1	291	75	114	14.1896
ccc[acccccc[ddddrrrrrrrrrdddd]ccc]ccc]a	chr1:241675269-241675534(-)$1	265	91	130	12.8608
####eeeee####ddddoooooodddd333eeeee4444	chr2:96933295-96933576(+)$1	281	52	91	15.5653
:dddd"""ccc[eeeeeooooooeeeee]ccc333dddd	chr14:39543518-39543791(-)$1	273	191	230	14.4482
=aeeeee"""gggggggoooooogggggggeeeee]a22	chr11:62300637-62300889(-)$1	252	190	229	13.6674
========="""ccc[aooooooa]ccc4444=======	chr6:26216407-26216653(-)$1	246	191	230	17.1309
ccc!!ccc[bb"""eeeeeooooooeeeeebb]ccc22c	chr2:32692590-32692842(+)$1	252	65	104	13.7461
!!hhhhhhhh[a!!a[aooooooa]a22a]hhhhhhhh2	chr12:111180356-111180627(-)$1	271	155	194	13.3109
ee!!ccc!!ccc[ffffffmmmmffffff]ccc]ccc33	chr22:38890805-38891041(-)$1	236	94	133	11.2549
hhh!!bb####cccaooooooa]ccc4444bb]hhhhhh	chr6:42980595-42980856(-)$1	261	104	143	13.1121
[dddd[ccc!!ccc[bboooooobb333ccc333ccc22	chr8:48883110-48883518(+)$1	408	250	289	16.2009
fff$$$$$ccc!!ddddoooooodddd22ccc666666f	chr11:60610108-60610430(+)$1	322	71	110	13.3582
iiiiii!!eeeee[cccnnnnnccceeeee]iiiiiiii	chr17:61907392-61907609(+)$1	217	175	214	11.4933
dddd$$$$$ccc!!cccooooooccc22ccc666666dd	chr12:81532809-81533122(+)$1	313	187	226	12.8783
###ccc!!ccc####cccmmmmccc4444ccc22ccc44	chr5:150496587-150496801(-)$1	214	92	131	13.9551
ffff[ggggggg[ddddooooooddddggggggg]ffff	chr17:34151029-34151303(+)$1	274	8	47	13.8092
[dddd[bb[cccddddoooooodddd333ccc]bb]ddd	chr19:57328377-57328671(-)$1	294	10	49	13.7863
[bb"""bb[bb!!eeeeeooooooeeeee22bb]bb333	chr7:29963542-29963790(-)$1	248	183	222	14.2239
ccc[ddddgggggggooooooggggggg333ddddccc]	chr16:12874988-12875320(-)$1	332	109	148	11.9206
e"""ggggggg"""cccooooooccc22ggggggg4444	chr16:69744960-69745242(-)$1	282	8	47	16.5940
hhhhhh[dddd[ccc[aooooooa]ccc22dddd]hhhh	chr1:182354568-182354791(-)$1	223	54	93	12.0053
eeee:::==========oooooo================	chr3:184045544-184045814(+)$1	270	176	215	13.0991
ddd!!ccc[bb"""cccooooooccc4444bb22ccc22	chr6:7562831-7563075(+)$1	244	182	221	18.4528
ccc!!dddd####ddddoooooodddd333ddddccc::	chr3:58124010-58124240(+)$1	230	58	97	14.2428
==="""bbccc^^^^^^^^^^^^^^^^^^^ccc]bb333	chr11:118344783-118345047(+)$1	264	209	248	10.8011

#otherMatches

#Seq PSSM
UCCCCAAAGGUUCAGCGUCUUCCAUUUCUUUCAAGCUCA	chr13:29246424-29246670(+)$1	246	42	81	11.1608
ACCCCCCUGUAGAGGGCUCCUAUGCCCCCCGCAGGGGAG	chr7:127724730-127724933(+)$1	203	96	135	12.8497
CCACGGCCACCGUGCUGAAGGCCCAGUUCCCGAGUGUGG	chr16:29708418-29708728(+)$1	310	111	150	17.5191
UGGGGAGAAUGAUUGCCGCUAUGCUCACCCUACUGAUGC	chrX:131524803-131525104(-)$1	301	28	67	13.3768
UGGACUCUGACACCUUAUGCACUGAAGAGGUCUUCCCCA	chr2:207007313-207007526(-)$1	213	65	104	11.4179
AGAACUGGGGUAGCAGAGGUGGCCUCUAGCUUGGCACCA	chrX:153226935-153227181(-)$1	246	3	42	10.8820
AUCCCAGCAAGUUGUGGCCCAGAUUGAGAUGGUCGUCUA	chr16:70287835-70288041(-)$1	206	51	90	10.7069
CAGCAUCUUCGGUUGGGUAAGCUCCAGAGAAGACCUGAA	chr5:150512554-150512783(-)$1	229	113	152	11.6586
AAGUAAGUACUGGUCUGGGGAUCCCAGGGCAGCAACUCC	chr17:5341352-5341663(-)$1	311	219	258	12.6739
AAUUUUGCUUUUUUACCUCAUGAUGGUUUAGGUGUGGGA	chr2:69597072-69597336(-)$1	264	65	104	12.0064
CGUCAGCAGCUACAGCCCUCCACAGGUGAGAGAAUGAGU	chr19:41809921-41810203(+)$1	282	220	259	13.0485
UUGGCUUUAAGAAGAAGGACAAGGGAGGCAUUAAUCUCA	chr22:31816245-31816512(+)$1	267	119	158	15.1716
UGAGAUGCGGCUGCAGAACGCCCUCAACGAGCAGCGUGU	chr11:71725342-71725631(-)$1	289	172	211	15.0613
AGCCUACUGGAGCCAGCAGUACCGCUGUCUCUACCCAGG	chr7:5359928-5360150(-)$1	222	149	188	13.5146
ACAUCAGUGCUUUGACAGGGGGAACUGUUCAUCUUGAUG	chr14:23946308-23946646(+)$1	338	216	255	13.7435
GAUGGCUGCCAUAUUGGGAGACACCAUCAUGGUGGCUAA	chr1:227149053-227149305(+)$1	252	32	71	14.5975
AGUGCAGUCUCUGAGCUCCUUCCAGUCCGAAUCGUGCGA	chr4:187516742-187516990(-)$1	248	101	140	12.1708
CCCUAUCUCCCACCCGUGAACCACAGGGGAUGCGGAACU	chrX:70349482-70349786(+)$1	304	21	60	11.1331
UUGCUUUGAUUUAUGGAACACCGAGAGCAGCCACUGUCA	chr17:66521793-66522114(+)$1	321	159	198	11.6107
GCUUGCCAGAAGAUGAUCUUAGAGUUGUUUUCUAAGGUU	chr10:106019343-106019630(+)$1	287	177	216	15.8598
UUUUUAAUUCUUUUUUUUUUUUCAAAUAAAGGUGUGGAA	chr9:33056789-33057062(-)$1	273	69	108	14.9405
AUUUACCACCUUUCCACUCCUGUGUGGACCCUGGCAGAU	chr11:61081732-61082041(-)$1	309	9	48	14.6907
UCCGGAAGACUCUGGCUGACCUCCAGCUGGAGUAUCUGG	chr1:46032440-46032671(+)$1	231	179	218	11.9694
GGGUUGGGGAGCACACUGCCUUACAGUUUUGGUGCCAAU	chrX:77380727-77380966(+)$1	239	4	43	12.3092
AGAGCUGUGCAGAUCUAGACAAAUGGCUGCACGGCCUGG	chr2:54871432-54871696(+)$1	264	181	220	15.4661
GGAGCCAGAGUACACGCUCCUCACAGAGCGAGGCCUCCC	chr20:47739593-47739861(-)$1	268	169	208	13.5313
ACAACAAGUUGUGUGGGCCAGACCCCACCAACCAGAACC	chr1:40533237-40533487(+)$1	250	183	222	13.6648
AGUGUGGAGUUGCAGCUAGAAACACAGCAGCACAUCCAU	chr1:39757479-39757768(+)$1	289	141	180	11.6961
UCAGCUGAAGGGGGAGAUAAAGCUCUACAUAAGAUGGGU	chr10:75551920-75552211(+)$1	291	75	114	14.1896
GUAGCUGAAGGUAAAUUAAAUGAUCAUUUUCCUCUCGUG	chr1:241675269-241675534(-)$1	265	91	130	12.8608
UUUCCCCUUUCACAGUGUGUAACCACUCUCGAGGGCCAU	chr2:96933295-96933576(+)$1	281	52	91	15.5653
ACAGUUUUUGUAAUUAUAAGCAAAUGAUGACAUUUACUG	chr14:39543518-39543791(-)$1	273	191	230	14.4482
UGGAUGCCUCUGCUCCCCAAAUUGGGGGUAGCAUCACUG	chr11:62300637-62300889(-)$1	252	190	229	13.6674
AGGCUCUUUUCAGAGCCACUCAAGUCUCACAUAAAGAGC	chr6:26216407-26216653(-)$1	246	191	230	17.1309
CCACUUGUGGAGACUUGGCCUCUUUGUCAAUUGACAUUU	chr2:32692590-32692842(+)$1	252	65	104	13.7461
AACGGCUGCUGGAAGGUAAGGGGGGCGGCGGGCGGCUGA	chr12:111180356-111180627(-)$1	271	155	194	13.3109
AGAAUGCUUGAUAUGGGGUUUGAACCCCAGAUCCGUAAA	chr22:38890805-38891041(-)$1	236	94	133	11.2549
UUUGCCAGACCCACCAUUAGAGAGUGAAGAUGAAGAUGA	chr6:42980595-42980856(-)$1	261	104	143	13.1121
GUUCGACAAGAUGAAUGAAAGUACAAGAUCGGUAUUGCA	chr8:48883110-48883518(+)$1	408	250	289	16.2009
CCGAGCAAGCCACCUCCAGCUGGGGAGACGGUGACAGGC	chr11:60610108-60610430(+)$1	322	71	110	13.3582
GUGGUGGUGGUGGUGGGGUCAGCUCUUACUGUACCACUU	chr17:61907392-61907609(+)$1	217	175	214	11.4933
GGACAACACAAACCAGACAAAAUUCUCAUUUAUAAUCGU	chr12:81532809-81533122(+)$1	313	187	226	12.8783
CCAGGCACGGGAAGAUGCCCAGGUAAGACCCCCAGCCCA	chr5:150496587-150496801(-)$1	214	92	131	13.9551
GAAAUGAGAGUGGUUAUUUGUGUGUAAUAUUUUCUUUUU	chr17:34151029-34151303(+)$1	274	8	47	13.8092
CAGAAAGAGAGUUCUUGAAAGAAAGAGGCGCUAUCAUUU	chr19:57328377-57328671(-)$1	294	10	49	13.7863
ACUGUGUUGACACGGAGAUUAAGUUCUUUAAGUGAAGUA	chr7:29963542-29963790(-)$1	248	183	222	14.2239
CCCACAGUUUGGGCUGAUCAAGGCCUGGUCCACUGGGGA	chr16:12874988-12875320(-)$1	332	109	148	11.9206
AACUGCAUGGAAUUGGUUGACUUACCUCUCUGUGCUUUC	chr16:69744960-69745242(-)$1	282	8	47	16.5940
AGUGAGCAGUUAGCUUUGUUUUAAUGGCCAAGCUUCUCG	chr1:182354568-182354791(-)$1	223	54	93	12.0053
AGCAUAUGGGGCAGCUGCUGCACCAGCUGCUCUGUGCUG	chr3:184045544-184045814(+)$1	270	176	215	13.0991
GUACUUGUCUGUGUUUCAUUUUAGAGUCUUCAAAAUAUC	chr6:7562831-7563075(+)$1	244	182	221	18.4528
AGACUGCCGGGAAGGGUAAAGUGACCUGCACGGUUCUGA	chr3:58124010-58124240(+)$1	230	58	97	14.2428
GUAAGAGUCUUAAACAAACCGACCAGCCCAAAGCACAGG	chr11:118344783-118345047(+)$1	264	209	248	10.8011

#DB
(((..(((((((.(((..................)))..	chr13:29246424-29246670(+)$1	1	42	81	11.1608
.))(((((((.(.((((......)))).).)))))))..	chr7:127724730-127724933(+)$1	1	96	135	12.8497
((((((((((((.((((......))))...))...))))	chr16:29708418-29708728(+)$1	1	111	150	17.5191
(((((....(((..((......))))))))))).).)))	chrX:131524803-131525104(-)$1	1	28	67	13.3768
(((.....(((..(((........)))..)))....)))	chr2:207007313-207007526(-)$1	1	65	104	11.4179
(((..(((.((((((((((...))))).)))..)).)))	chrX:153226935-153227181(-)$1	1	3	42	10.8820
..((...(((.(((.....))).)))....))..)))..	chr16:70287835-70288041(-)$1	1	51	90	10.7069
(((..(((((..(((((.....))))).))))).)))..	chr5:150512554-150512783(-)$1	1	113	152	11.6586
(((..(((.(((.((((((...)))))).)))..)))..	chr17:5341352-5341663(-)$1	1	219	258	12.6739
((((((((.(((..(((.......)))..))).))))))	chr2:69597072-69597336(-)$1	1	65	104	12.0064
..(((....((...(((.......)))...))..)))))	chr19:41809921-41810203(+)$1	1	220	259	13.0485
.(((((...(((..((...(......)...))..)))..	chr22:31816245-31816512(+)$1	1	119	158	15.1716
(.(.((((.(((...((......))....))).)))).)	chr11:71725342-71725631(-)$1	1	172	211	15.0613
(((((..(((((.((((......)))).)))))...)))	chr7:5359928-5360150(-)$1	1	149	188	13.5146
.((((((((....(((((......))))))))..)))))	chr14:23946308-23946646(+)$1	1	216	255	13.7435
..((((((((((..(((......)))..)))))))))).	chr1:227149053-227149305(+)$1	1	32	71	14.5975
.((((.(..((.((.((......)))).))..)))))..	chr4:187516742-187516990(-)$1	1	101	140	12.1708
.(((.((((((((((.((.....)).))).)).)))...	chrX:70349482-70349786(+)$1	1	21	60	11.1331
((((((((((...(((..............)))..))))	chr17:66521793-66522114(+)$1	1	159	198	11.6107
((((...((((((((((......)))))))))).)))))	chr10:106019343-106019630(+)$1	1	177	216	15.8598
((((((..(((((.(((......))).)))))..)))))	chr9:33056789-33057062(-)$1	1	69	108	14.9405
((((.(((....(((((......)))))...))).))))	chr11:61081732-61082041(-)$1	1	9	48	14.6907
((((((..((((((((((.....)))))))))).)))))	chr1:46032440-46032671(+)$1	1	179	218	11.9694
(((...((.(.((.((((.....))))..)).).))...	chrX:77380727-77380966(+)$1	1	4	43	12.3092
((.(((((((((..(((......))))))))))))))))	chr2:54871432-54871696(+)$1	1	181	220	15.4661
((.((..(((..(.(((((......))))).)..)))..	chr20:47739593-47739861(-)$1	1	169	208	13.5313
.(.....((((.(((((......)))))))))..).)))	chr1:40533237-40533487(+)$1	1	183	222	13.6648
.(((((((..(((.(((........))).)))..)))))	chr1:39757479-39757768(+)$1	1	141	180	11.6961
(((.((....(.((((......)))).)...)).)))).	chr10:75551920-75552211(+)$1	1	75	114	14.1896
(((.(((((((.((((.........)))).))).))).)	chr1:241675269-241675534(-)$1	1	91	130	12.8608
....(((((....((((......))))...)))))....	chr2:96933295-96933576(+)$1	1	52	91	15.5653
.((((...(((.(((((......))))).)))...))))	chr14:39543518-39543791(-)$1	1	191	230	14.4482
(((((((...(((((((......)))))))))))).)..	chr11:62300637-62300889(-)$1	1	190	229	13.6674
(((((((((...(((.(......).)))....)))))))	chr6:26216407-26216653(-)$1	1	191	230	17.1309
(((..(((.((...(((((......))))))).)))..)	chr2:32692590-32692842(+)$1	1	65	104	13.7461
..((((((((.(..(.(......).)..).)))))))).	chr12:111180356-111180627(-)$1	1	155	194	13.3109
((..(((..(((.((((((....)))))).))).)))..	chr22:38890805-38891041(-)$1	1	94	133	11.2549
(((..((....((((......).)))....)).))))))	chr6:42980595-42980856(-)$1	1	104	143	13.1121
.((((.(((..(((.((......))...)))...)))..	chr8:48883110-48883518(+)$1	1	250	289	16.2009
(((.....(((..((((......))))..)))......)	chr11:60610108-60610430(+)$1	1	71	110	13.3582
((((((..(((((.(((.....)))))))).))))))))	chr17:61907392-61907609(+)$1	1	175	214	11.4933
((((.....(((..(((......)))..)))......))	chr12:81532809-81533122(+)$1	1	187	226	12.8783
...(((..(((....(((....)))....)))..)))..	chr5:150496587-150496801(-)$1	1	92	131	13.9551
((((.(((((((.((((......))))))))))).))))	chr17:34151029-34151303(+)$1	1	8	47	13.8092
.((((.((.(((((((......))))...))).)).)))	chr19:57328377-57328671(-)$1	1	10	49	13.7863
.((...((.((..(((((......)))))..)).))...	chr7:29963542-29963790(-)$1	1	183	222	14.2239
(((.(((((((((((......)))))))...))))))).	chr16:12874988-12875320(-)$1	1	109	148	11.9206
(...(((((((...(((......)))..)))))))....	chr16:69744960-69745242(-)$1	1	8	47	16.5940
((((((.((((.(((.(......).)))..)))).))))	chr1:182354568-182354791(-)$1	1	54	93	12.0053
))))...((((((((((......))))))))))((((((	chr3:184045544-184045814(+)$1	1	176	215	13.0991
(((..(((.((...(((......)))....))..)))..	chr6:7562831-7563075(+)$1	1	182	221	18.4528
(((..((((....((((......))))...)))))))..	chr3:58124010-58124240(+)$1	1	58	97	14.2428
(((...(((((...................))).))...	chr11:118344783-118345047(+)$1	1	209	248	10.8011

#PSSM
c : 0.15	f : 0.13	[ : 0.11	= : 0.09	d : 0.09	e : 0.07	! : 0.07	h : 0.05	# : 0.05	i : 0.03	: : 0.03	] : 0.01	" : 0.01	g : 0.01	b : 0.01	
d : 0.18	c : 0.16	f : 0.11	e : 0.09	= : 0.07	b : 0.05	! : 0.05	i : 0.03	g : 0.03	a : 0.03	# : 0.03	h : 0.03	[ : 0.01	: : 0.01	" : 0.01	
c : 0.18	d : 0.16	f : 0.11	= : 0.09	e : 0.09	b : 0.05	h : 0.05	i : 0.03	g : 0.03	[ : 0.03	# : 0.03	a : 0.01	$ : 0.01	! : 0.01	" : 0.01	
! : 0.16	d : 0.11	f : 0.09	= : 0.07	e : 0.07	[ : 0.07	" : 0.07	g : 0.05	$ : 0.05	i : 0.05	c : 0.05	b : 0.03	h : 0.03	# : 0.01	
! : 0.15	d : 0.13	" : 0.09	g : 0.07	= : 0.07	$ : 0.07	e : 0.07	i : 0.05	c : 0.05	[ : 0.05	f : 0.03	b : 0.03	h : 0.03	a : 0.01	: : 0.01	
c : 0.15	g : 0.11	" : 0.11	e : 0.09	= : 0.07	$ : 0.07	i : 0.05	d : 0.05	[ : 0.05	b : 0.05	# : 0.03	! : 0.03	h : 0.03	f : 0.01	: : 0.01	
c : 0.16	! : 0.11	b : 0.11	g : 0.09	= : 0.07	$ : 0.07	" : 0.07	# : 0.05	e : 0.05	d : 0.05	i : 0.03	a : 0.01	h : 0.01	[ : 0.01	: : 0.01	
c : 0.20	= : 0.11	! : 0.11	g : 0.09	d : 0.09	# : 0.07	b : 0.07	$ : 0.05	e : 0.05	" : 0.05	i : 0.03	h : 0.01	
c : 0.20	[ : 0.16	= : 0.13	g : 0.09	# : 0.09	e : 0.09	! : 0.05	d : 0.05	" : 0.03	i : 0.01	h : 0.01	$ : 0.01	
c : 0.32	= : 0.11	b : 0.11	# : 0.11	g : 0.09	e : 0.07	d : 0.03	! : 0.03	" : 0.03	a : 0.01	i : 0.01	h : 0.01	
c : 0.28	b : 0.15	g : 0.09	# : 0.09	[ : 0.07	= : 0.07	! : 0.05	e : 0.05	" : 0.03	d : 0.03	i : 0.01	a : 0.01	
c : 0.24	" : 0.11	[ : 0.11	! : 0.09	# : 0.09	g : 0.07	= : 0.07	b : 0.05	e : 0.05	a : 0.03	i : 0.01	^ : 0.01	
! : 0.18	c : 0.15	[ : 0.13	e : 0.11	" : 0.11	# : 0.07	= : 0.05	d : 0.05	b : 0.03	g : 0.03	a : 0.01	^ : 0.01	
c : 0.18	d : 0.18	! : 0.13	e : 0.11	" : 0.09	[ : 0.09	= : 0.05	f : 0.03	g : 0.03	b : 0.01	# : 0.01	^ : 0.01	
c : 0.30	d : 0.20	e : 0.16	= : 0.05	b : 0.03	f : 0.03	[ : 0.03	g : 0.03	a : 0.03	n : 0.01	" : 0.01	# : 0.01	^ : 0.01	
c : 0.26	d : 0.20	e : 0.16	b : 0.09	[ : 0.07	= : 0.05	f : 0.03	o : 0.03	n : 0.01	g : 0.01	^ : 0.01	
c : 0.20	e : 0.16	d : 0.15	o : 0.09	b : 0.07	= : 0.05	a : 0.05	^ : 0.03	f : 0.03	q : 0.01	n : 0.01	" : 0.01	w : 0.01	r : 0.01	g : 0.01	
o : 0.56	e : 0.09	n : 0.05	^ : 0.03	q : 0.03	f : 0.03	p : 0.03	" : 0.01	b : 0.01	w : 0.01	= : 0.01	d : 0.01	r : 0.01	c : 0.01	
o : 0.60	n : 0.11	e : 0.05	^ : 0.03	q : 0.03	f : 0.03	p : 0.03	" : 0.01	w : 0.01	r : 0.01	m : 0.01	
o : 0.64	n : 0.09	^ : 0.03	q : 0.03	l : 0.03	p : 0.03	m : 0.03	c : 0.01	a : 0.01	w : 0.01	r : 0.01	
o : 0.66	n : 0.09	^ : 0.03	q : 0.03	l : 0.03	p : 0.03	m : 0.03	c : 0.01	w : 0.01	r : 0.01	
o : 0.62	n : 0.09	^ : 0.03	q : 0.03	l : 0.03	p : 0.03	m : 0.03	c : 0.01	w : 0.01	r : 0.01	a : 0.01	g : 0.01	
o : 0.56	n : 0.05	^ : 0.03	q : 0.03	e : 0.03	] : 0.03	p : 0.03	d : 0.03	c : 0.03	b : 0.01	f : 0.01	w : 0.01	r : 0.01	m : 0.01	g : 0.01	
d : 0.18	c : 0.18	b : 0.09	e : 0.09	o : 0.09	= : 0.05	a : 0.05	^ : 0.03	q : 0.03	f : 0.03	p : 0.03	g : 0.03	w : 0.01	r : 0.01	
c : 0.26	d : 0.18	e : 0.13	b : 0.07	o : 0.05	= : 0.05	] : 0.05	^ : 0.03	f : 0.03	g : 0.03	w : 0.01	q : 0.01	r : 0.01	
c : 0.28	d : 0.20	e : 0.18	= : 0.05	^ : 0.03	f : 0.03	4 : 0.03	g : 0.03	o : 0.01	b : 0.01	] : 0.01	w : 0.01	a : 0.01	3 : 0.01	
e : 0.18	d : 0.16	c : 0.15	4 : 0.09	2 : 0.07	= : 0.05	^ : 0.03	f : 0.03	] : 0.03	g : 0.03	3 : 0.03	a : 0.01	b : 0.01	w : 0.01	i : 0.01	
e : 0.16	2 : 0.15	3 : 0.13	] : 0.09	4 : 0.09	c : 0.07	f : 0.05	= : 0.05	g : 0.05	^ : 0.03	w : 0.01	i : 0.01	a : 0.01	d : 0.01	
3 : 0.16	e : 0.15	4 : 0.11	2 : 0.09	c : 0.07	= : 0.07	] : 0.05	g : 0.05	^ : 0.03	a : 0.03	f : 0.03	d : 0.03	b : 0.01	w : 0.01	i : 0.01	
c : 0.24	3 : 0.15	e : 0.11	] : 0.09	4 : 0.07	= : 0.07	g : 0.05	^ : 0.03	b : 0.03	2 : 0.03	f : 0.01	w : 0.01	i : 0.01	d : 0.01	
c : 0.32	b : 0.16	e : 0.09	= : 0.07	g : 0.05	3 : 0.05	d : 0.05	2 : 0.03	] : 0.03	^ : 0.01	f : 0.01	i : 0.01	4 : 0.01	h : 0.01	
c : 0.28	b : 0.18	e : 0.09	= : 0.07	d : 0.07	g : 0.05	2 : 0.03	i : 0.03	^ : 0.01	f : 0.01	] : 0.01	a : 0.01	4 : 0.01	h : 0.01	3 : 0.01	6 : 0.01	
2 : 0.22	] : 0.11	= : 0.09	c : 0.09	e : 0.07	g : 0.05	3 : 0.05	d : 0.05	a : 0.03	i : 0.03	b : 0.03	6 : 0.03	^ : 0.01	f : 0.01	4 : 0.01	h : 0.01	
2 : 0.22	] : 0.18	d : 0.09	3 : 0.07	g : 0.05	i : 0.05	= : 0.05	c : 0.05	b : 0.03	e : 0.03	h : 0.03	6 : 0.03	^ : 0.01	4 : 0.01	
c : 0.28	b : 0.09	g : 0.07	d : 0.07	3 : 0.05	i : 0.05	e : 0.05	= : 0.05	] : 0.05	a : 0.03	f : 0.03	h : 0.03	6 : 0.03	4 : 0.01	2 : 0.01	
c : 0.30	= : 0.09	] : 0.09	d : 0.09	f : 0.07	g : 0.05	4 : 0.05	b : 0.05	h : 0.05	i : 0.03	6 : 0.03	3 : 0.01	e : 0.01	
c : 0.32	d : 0.13	= : 0.09	3 : 0.07	f : 0.07	g : 0.05	h : 0.05	e : 0.03	i : 0.03	4 : 0.03	6 : 0.03	a : 0.01	2 : 0.01	
2 : 0.15	3 : 0.13	d : 0.11	= : 0.09	c : 0.09	4 : 0.07	f : 0.07	h : 0.05	: : 0.03	e : 0.03	i : 0.03	] : 0.03	g : 0.03	6 : 0.01	
2 : 0.15	3 : 0.13	c : 0.09	4 : 0.09	d : 0.09	f : 0.09	= : 0.07	: : 0.05	e : 0.03	i : 0.03	a : 0.03	g : 0.03	h : 0.03	] : 0.01	

#score	714.541460789447
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_transcript_m2_run1.txt

#BEAR
!!eeeeeuuuuuuuuuuuueeeee]iii	chr8:11687625-11687874(+)$1	249	106	134	23.7340
fffff[bbtttttttttttbb]ffffff	chr19:2432456-2432758(-)$1	302	243	271	23.6696
fffff[bbtttttttttttbb]ffffff	chr22:29440591-29440875(+)$1	284	163	191	23.6696
!bb[ddddvvvvvvvvvvvvvdddd]bb	chr7:1511771-1512014(-)$1	243	58	86	23.5182
d####bbuuuuuuuuuuuubb4444ddd	chr11:61041804-61042070(-)$1	266	119	147	22.8045
fgggggggtttttttttttggggggg22	chr8:17401803-17402097(+)$1	294	164	192	24.4512
h"""ddddtttttttttttddddhhhhh	chr2:216809586-216809856(-)$1	270	135	163	24.2444
ggggggbbtttttttttttbb]gggggg	chr20:368843-369056(+)$1	213	13	41	24.5878
cc[eeeeettttttttttteeeee]ccc	chr8:103664462-103664779(-)$1	317	170	198	24.3197
[ffffffvvvvvvvvvvvvvffffffcc	chr12:57572284-57572495(+)$1	211	40	68	23.8320
:gggggggtttttttttttggggggg::	chr10:5139627-5139892(+)$1	265	118	146	21.9986
fff[bbvvvvvvvvvvvvvbbffffff3	chr19:43026211-43026508(-)$1	297	178	206	22.9401
iiiiiiiiuuuuuuuuuuuuiiiiiiii	chr9:140100264-140100499(+)$1	235	204	232	24.4858
ccc[ddddyyyyyyyyyyyyyyyydddd	chr20:60714870-60715136(-)$1	266	98	126	20.3598
ccc[accctttttttttttccc]a]ccc	chr1:8418134-8418357(-)$1	223	82	110	25.4235
cbb!!ccctttttttttttccc22bb]c	chr14:95058245-95058529(+)$1	284	204	232	24.5218
eaddddvvvvvvvvvvvvvdddd]a]ee	chr17:80037310-80037556(-)$1	246	184	212	22.7587
gggggggwwwwwwwwwwwwwwggggggg	chr14:53127891-53128145(-)$1	254	213	241	22.9181
c[a!!bbuuuuuuuuuuuubb333a]cc	chr12:56510576-56510783(+)$1	207	46	74	23.9611
c"""ddddtttttttttttdddd]ccc6	chr11:34111944-34112205(+)$1	261	67	95	24.7616
[ffffffwwwwwwwwwwwwwwffffff]	chr2:232326578-232326824(-)$1	246	203	231	22.2484
[bb[ddddtttttttttttddddbb]bb	chr4:110638524-110638809(-)$1	285	80	108	24.1421
!!eeeeeuuuuuuuuuuuueeeeeffff	chr5:891224-891449(-)$1	225	181	209	23.4810
[a"""ccctttttttttttccc333a]g	chr14:20813466-20813719(+)$1	253	137	165	25.9234
ee!!bb[atttttttttttabb22eeee	chr19:15514399-15514695(-)$1	296	234	262	23.7114
iiiiiiiitttttttttttiiiiiiiii	chr2:183604916-183605171(+)$1	255	141	169	24.9943
!ffffffuuuuuuuuuuuufffffffff	chr11:822247-822489(+)$1	242	161	189	23.4397
fffffffftttttttttttffffff444	chr16:67213176-67213437(-)$1	261	172	200	23.7350
ddd[ddddtttttttttttdddddddd]	chr11:34186207-34186532(-)$1	325	13	41	23.9198
ddd[dddduuuuuuuuuuuudddd]ddd	chr2:242174892-242175121(-)$1	229	137	165	23.4744
!a[cccvvvvvvvvvvvvvccc]a22dd	chr11:63964702-63964955(+)$1	253	140	168	23.5170
[bbeeeeettttttttttteeeee6666	chr2:209119525-209119773(-)$1	248	70	98	22.1766
hhhhhhhhttttttttttthhhhhhhh]	chr5:174918958-174919249(+)$1	291	3	31	22.0366
ee!!ddddwwwwwwwwwwwwwwdddd]e	chr20:43046920-43047147(+)$1	227	9	37	21.6915
fff[ddddtttttttttttddddfffff	chr2:272019-272340(+)$1	321	237	265	24.8627
[gggggggtttttttttttgggggggee	chr17:56440493-56440776(-)$1	283	17	45	25.0579
[gggggggvvvvvvvvvvvvvggggggg	chr20:36156058-36156295(-)$1	237	206	234	24.5552
dd[eeeeewwwwwwwwwwwwwweeeee7	chr8:22265917-22266145(+)$1	228	23	51	20.5554
ccc[dddduuuuuuuuuuuudddd22cc	chr9:86591816-86592078(-)$1	262	178	206	24.0985
===a[avvvvvvvvvvvvva]a]=====	chr10:71877416-71877687(-)$1	271	224	252	24.0319
dd!!ddddvvvvvvvvvvvvvdddd22d	chr11:61580729-61580997(-)$1	268	48	76	23.2376
i"""dddduuuuuuuuuuuuddddiiii	chr12:2930693-2931036(+)$1	343	277	305	24.6636
'ggggggguuuuuuuuuuuuggggggg7	chr5:141014368-141014696(-)$1	328	172	200	23.4143
hhh[ddddtttttttttttdddd22hhh	chr5:170837424-170837658(+)$1	234	102	130	23.9767
========ttttttttttt=========	chr6:43746482-43746722(+)$1	240	20	48	25.5122
[ffffffvvvvvvvvvvvvvffffffcc	chr11:8704615-8704904(+)$1	289	8	36	23.8320
[bb!!cccvvvvvvvvvvvvvccc22bb	chr2:101611755-101611976(+)$1	221	136	164	23.6027
!gggggggtttttttttttgggggggdd	chr1:182354880-182355140(-)$1	260	27	55	24.9564
ff[bbccctttttttttttccc22bb]f	chrX:102840948-102841236(+)$1	288	47	75	23.8516
[ffffffwwwwwwwwwwwwwwffffffc	chr12:42707391-42707717(-)$1	326	43	71	22.2322
####ddddtttttttttttdddd]ffff	chr17:40935758-40936084(+)$1	326	47	75	25.1269
!bb!!ccctttttttttttccc]bbiii	chr14:35871837-35872082(-)$1	245	157	185	25.0422
f####ccctttttttttttccc22ffff	chr11:822503-822745(+)$1	242	26	54	25.0417

#otherMatches

#Seq PSSM
UUAAUCUUCUUAUCUGUCUAGGUUUGGA	chr8:11687625-11687874(+)$1	249	106	134	23.7340
UCUCUGGGGAACUGGAGAAUCAAGAGGC	chr19:2432456-2432758(-)$1	302	243	271	23.6696
UGUUCCGUUCCAGCAACCCACUGAAUAC	chr22:29440591-29440875(+)$1	284	163	191	23.6696
AGAUGGCCCCCUACAUGAAACGGCUUUC	chr7:1511771-1512014(-)$1	243	58	86	23.5182
CAAAGCCUGUGGAAUUGAUGGAGAGGGG	chr11:61041804-61042070(-)$1	266	119	147	22.8045
AGUGUUGCAAGAGCCUGGAGUGGCACCU	chr8:17401803-17402097(+)$1	294	164	192	24.4512
GGACCGUCUCAUUGCACUUGAUGCUGCA	chr2:216809586-216809856(-)$1	270	135	163	24.2444
UUGGGCCCUAUGUCCUCCUGGAGCCCGA	chr20:368843-369056(+)$1	213	13	41	24.5878
UGAUUUCUGAAAGGCCAAAAGAGAGUAU	chr8:103664462-103664779(-)$1	317	170	198	24.3197
ACAGAGGACCAACACCCAGCCCUUUGAC	chr12:57572284-57572495(+)$1	211	40	68	23.8320
UGCAGUUUGUAUGAGCAUAAAAUUGCGC	chr10:5139627-5139892(+)$1	265	118	146	21.9986
CCAGCAACAACUCCAACCCUGUGGAGGA	chr19:43026211-43026508(-)$1	297	178	206	22.9401
CUUUCCCUUAUGGCGGAUUUAGGGAAGG	chr9:140100264-140100499(+)$1	235	204	232	24.4858
UGCUGGGUCAUCGUGUCUGUCCCCACCC	chr20:60714870-60715136(-)$1	266	98	126	20.3598
gcaggacccccuccaccaAGGUGCGUGC	chr1:8418134-8418357(-)$1	223	82	110	25.4235
CACGGGGACAAUAUUCACUUUCAGGUCG	chr14:95058245-95058529(+)$1	284	204	232	24.5218
CCCGGUCCUUCUACUACAAGCUGCGUGC	chr17:80037310-80037556(-)$1	246	184	212	22.7587
UUCUUCUCACCUCUAAAAAUCAGAAGAA	chr14:53127891-53128145(-)$1	254	213	241	22.9181
GGCGAGUAGUAGCGAGGAGACGAAGGCA	chr12:56510576-56510783(+)$1	207	46	74	23.9611
GUUCACUUUUUGUUUGGCUAAGUUUAGU	chr11:34111944-34112205(+)$1	261	67	95	24.7616
AGCUGUCACUCCAGGCAAAAAGGCAGCA	chr2:232326578-232326824(-)$1	246	203	231	22.2484
ACUAGGACUAACUCAGCAUGUUCAGGGU	chr4:110638524-110638809(-)$1	285	80	108	24.1421
CAAGGGUGCACUUUUAGAGACUCUCCUG	chr5:891224-891449(-)$1	225	181	209	23.4810
GUACAGCCAAGGUGGGGAAGGUAAGAGA	chr14:20813466-20813719(+)$1	253	137	165	25.9234
AUGGCCACUUCACACUCUUGGGAAAUGC	chr19:15514399-15514695(-)$1	296	234	262	23.7114
UUUGGAAGUAAUACAUAAUCUUCCAGAU	chr2:183604916-183605171(+)$1	255	141	169	24.9943
GGUGGCAUUUCAGACAACCUGCCACUCU	chr11:822247-822489(+)$1	242	161	189	23.4397
AGGAGGGGCCCCAAUAACUCCCCUUUUU	chr16:67213176-67213437(-)$1	261	172	200	23.7350
ACUUCGUCCACCAAAUGCAGAUGAGUGU	chr11:34186207-34186532(-)$1	325	13	41	23.9198
UAGAGGUGCCCUUUGACCUUCACCGUUA	chr2:242174892-242175121(-)$1	229	137	165	23.4744
ACAUGACUUACAUUACCAAUCAAGCAGG	chr11:63964702-63964955(+)$1	253	140	168	23.5170
CUGUGGCGCCCCAACUCUUCGCCAGCAU	chr2:209119525-209119773(-)$1	248	70	98	22.1766
AUUUAUAGCAAAAUUAUCUUUAUAAAUA	chr5:174918958-174919249(+)$1	291	3	31	22.0366
augaugcccauuucacaguucaggcagg	chr20:43046920-43047147(+)$1	227	9	37	21.6915
GAGCUGCCUAAGAAAUCAUGGCAUUCAC	chr2:272019-272340(+)$1	321	237	265	24.8627
GCCGCUGGGGCUGACCUGGCCAGUGGUG	chr17:56440493-56440776(-)$1	283	17	45	25.0579
ACUGGGGUUUUCCUUCCGCAUACCCCGG	chr20:36156058-36156295(-)$1	237	206	234	24.5552
GCACCUCGGAGAACCAGGAAAACGAGGA	chr8:22265917-22266145(+)$1	228	23	51	20.5554
AAGAGUUUAAACUACUACACGAGCAGCU	chr9:86591816-86592078(-)$1	262	178	206	24.0985
AGGCUCUCUCUUUUCCACUGUGUCCUGG	chr10:71877416-71877687(-)$1	271	224	252	24.0319
cuucaccucucaCUUCAACUUGGGUACA	chr11:61580729-61580997(-)$1	268	48	76	23.2376
CCUGGCAGAGCAGAGCAUUCCUGCGUUU	chr12:2930693-2931036(+)$1	343	277	305	24.6636
CGAGGUCUUCAAGCCAUACCAGGCCUCC	chr5:141014368-141014696(-)$1	328	172	200	23.4143
CCAGGCUAUUCAAGAUCUCUGGCAGUGG	chr5:170837424-170837658(+)$1	234	102	130	23.9767
acaguguugcuccauaauaaaugcuguu	chr6:43746482-43746722(+)$1	240	20	48	25.5122
CAGCUUUCCCAAACGCUCCAGAAGUUAG	chr11:8704615-8704904(+)$1	289	8	36	23.8320
CAGCAGGACUCGCUACUUCUCUCCACCU	chr2:101611755-101611976(+)$1	221	136	164	23.6027
AAGAGGGCAAGGCUUAAGGGCCUUCUGA	chr1:182354880-182355140(-)$1	260	27	55	24.9564
CCGAGGCCUGGAAAGAAAUGGCGGCUGG	chrX:102840948-102841236(+)$1	288	47	75	23.8516
UAUGUAUAUUAUUCUUACUAAAUACAUC	chr12:42707391-42707717(-)$1	326	43	71	22.2322
CUGGGGCCGGGCAGACAUAGGCUAGGAG	chr17:40935758-40936084(+)$1	326	47	75	25.1269
UGUGAGCAGAAAUUCCAAAUGCAGCCAU	chr14:35871837-35872082(-)$1	245	157	185	25.0422
UCACCAACACCAGCAUCCAGUUCAACCU	chr11:822503-822745(+)$1	242	26	54	25.0417

#DB
..(((((............))))).)))	chr8:11687625-11687874(+)$1	1	106	134	23.7340
(((((.((...........)).))))))	chr19:2432456-2432758(-)$1	1	243	271	23.6696
(((((.((...........)).))))))	chr22:29440591-29440875(+)$1	1	163	191	23.6696
.((.((((.............)))).))	chr7:1511771-1512014(-)$1	1	58	86	23.5182
(....((............))....)))	chr11:61041804-61042070(-)$1	1	119	147	22.8045
((((((((...........)))))))..	chr8:17401803-17402097(+)$1	1	164	192	24.4512
(...((((...........)))))))))	chr2:216809586-216809856(-)$1	1	135	163	24.2444
((((((((...........)).))))))	chr20:368843-369056(+)$1	1	13	41	24.5878
((.(((((...........))))).)))	chr8:103664462-103664779(-)$1	1	170	198	24.3197
.((((((.............))))))))	chr12:57572284-57572495(+)$1	1	40	68	23.8320
.(((((((...........)))))))..	chr10:5139627-5139892(+)$1	1	118	146	21.9986
(((.((.............)))))))).	chr19:43026211-43026508(-)$1	1	178	206	22.9401
((((((((............))))))))	chr9:140100264-140100499(+)$1	1	204	232	24.4858
(((.((((................))))	chr20:60714870-60715136(-)$1	1	98	126	20.3598
(((.((((...........))).).)))	chr1:8418134-8418357(-)$1	1	82	110	25.4235
(((..(((...........)))..)).)	chr14:95058245-95058529(+)$1	1	204	232	24.5218
((((((.............)))).).))	chr17:80037310-80037556(-)$1	1	184	212	22.7587
(((((((..............)))))))	chr14:53127891-53128145(-)$1	1	213	241	22.9181
(.(..((............))...).))	chr12:56510576-56510783(+)$1	1	46	74	23.9611
(...((((...........)))).))).	chr11:34111944-34112205(+)$1	1	67	95	24.7616
.((((((..............)))))).	chr2:232326578-232326824(-)$1	1	203	231	22.2484
.((.((((...........)))))).))	chr4:110638524-110638809(-)$1	1	80	108	24.1421
..(((((............)))))))))	chr5:891224-891449(-)$1	1	181	209	23.4810
.(...(((...........)))...).)	chr14:20813466-20813719(+)$1	1	137	165	25.9234
((..((.(...........)))..))))	chr19:15514399-15514695(-)$1	1	234	262	23.7114
((((((((...........)))))))))	chr2:183604916-183605171(+)$1	1	141	169	24.9943
.((((((............)))))))))	chr11:822247-822489(+)$1	1	161	189	23.4397
((((((((...........))))))...	chr16:67213176-67213437(-)$1	1	172	200	23.7350
(((.((((...........)))))))).	chr11:34186207-34186532(-)$1	1	13	41	23.9198
(((.((((............)))).)))	chr2:242174892-242175121(-)$1	1	137	165	23.4744
.(.(((.............))).)..))	chr11:63964702-63964955(+)$1	1	140	168	23.5170
.(((((((...........)))))....	chr2:209119525-209119773(-)$1	1	70	98	22.1766
((((((((...........)))))))).	chr5:174918958-174919249(+)$1	1	3	31	22.0366
((..((((..............)))).)	chr20:43046920-43047147(+)$1	1	9	37	21.6915
(((.((((...........)))))))))	chr2:272019-272340(+)$1	1	237	265	24.8627
.(((((((...........)))))))))	chr17:56440493-56440776(-)$1	1	17	45	25.0579
.(((((((.............)))))))	chr20:36156058-36156295(-)$1	1	206	234	24.5552
((.(((((..............))))).	chr8:22265917-22266145(+)$1	1	23	51	20.5554
(((.((((............))))..))	chr9:86591816-86592078(-)$1	1	178	206	24.0985
((((.(.............).).)))))	chr10:71877416-71877687(-)$1	1	224	252	24.0319
((..((((.............))))..)	chr11:61580729-61580997(-)$1	1	48	76	23.2376
(...((((............))))))))	chr12:2930693-2931036(+)$1	1	277	305	24.6636
.(((((((............))))))).	chr5:141014368-141014696(-)$1	1	172	200	23.4143
(((.((((...........))))..)))	chr5:170837424-170837658(+)$1	1	102	130	23.9767
((((((((...........)))))))))	chr6:43746482-43746722(+)$1	1	20	48	25.5122
.((((((.............))))))))	chr11:8704615-8704904(+)$1	1	8	36	23.8320
.((..(((.............)))..))	chr2:101611755-101611976(+)$1	1	136	164	23.6027
.(((((((...........)))))))))	chr1:182354880-182355140(-)$1	1	27	55	24.9564
((.(((((...........)))..)).)	chrX:102840948-102841236(+)$1	1	47	75	23.8516
.((((((..............)))))))	chr12:42707391-42707717(-)$1	1	43	71	22.2322
....((((...........)))).))))	chr17:40935758-40936084(+)$1	1	47	75	25.1269
.((..(((...........))).)))))	chr14:35871837-35872082(-)$1	1	157	185	25.0422
(....(((...........)))..))))	chr11:822503-822745(+)$1	1	26	54	25.0417

#PSSM
[ : 0.18	f : 0.15	! : 0.13	c : 0.13	d : 0.09	h : 0.05	i : 0.05	e : 0.05	g : 0.03	= : 0.03	: : 0.01	' : 0.01	# : 0.01	
f : 0.20	g : 0.15	b : 0.11	c : 0.07	d : 0.07	# : 0.05	" : 0.05	a : 0.05	! : 0.03	i : 0.03	e : 0.03	h : 0.03	= : 0.03	[ : 0.01	
f : 0.18	g : 0.15	b : 0.11	" : 0.07	[ : 0.07	# : 0.05	c : 0.05	d : 0.05	! : 0.05	e : 0.03	i : 0.03	h : 0.03	= : 0.03	a : 0.01	
[ : 0.18	f : 0.15	g : 0.15	! : 0.13	e : 0.09	" : 0.07	# : 0.05	i : 0.03	d : 0.01	c : 0.01	h : 0.01	a : 0.01	= : 0.01	b : 0.01	
d : 0.28	f : 0.15	g : 0.15	e : 0.09	! : 0.07	b : 0.05	# : 0.03	i : 0.03	a : 0.01	" : 0.01	c : 0.01	h : 0.01	[ : 0.01	= : 0.01	
d : 0.28	g : 0.15	c : 0.15	f : 0.11	e : 0.09	b : 0.07	[ : 0.03	i : 0.03	h : 0.01	a : 0.01	= : 0.01	
d : 0.26	g : 0.13	c : 0.13	f : 0.11	e : 0.09	b : 0.09	v : 0.07	i : 0.03	[ : 0.01	h : 0.01	= : 0.01	
d : 0.26	c : 0.13	g : 0.11	v : 0.11	u : 0.09	b : 0.05	e : 0.05	w : 0.05	i : 0.03	a : 0.01	f : 0.01	h : 0.01	= : 0.01	
t : 0.50	u : 0.18	v : 0.18	w : 0.09	y : 0.01	
t : 0.50	u : 0.18	v : 0.18	w : 0.09	y : 0.01	
t : 0.50	u : 0.18	v : 0.18	w : 0.09	y : 0.01	
t : 0.50	u : 0.18	v : 0.18	w : 0.09	y : 0.01	
t : 0.50	u : 0.18	v : 0.18	w : 0.09	y : 0.01	
t : 0.50	u : 0.18	v : 0.18	w : 0.09	y : 0.01	
t : 0.50	u : 0.18	v : 0.18	w : 0.09	y : 0.01	
t : 0.50	u : 0.18	v : 0.18	w : 0.09	y : 0.01	
t : 0.50	u : 0.18	v : 0.18	w : 0.09	y : 0.01	
t : 0.50	u : 0.18	v : 0.18	w : 0.09	y : 0.01	
t : 0.50	u : 0.18	v : 0.18	w : 0.09	y : 0.01	
d : 0.15	c : 0.13	b : 0.11	v : 0.11	u : 0.09	w : 0.09	e : 0.07	g : 0.07	a : 0.03	f : 0.03	y : 0.01	i : 0.01	h : 0.01	= : 0.01	
d : 0.20	b : 0.13	c : 0.13	g : 0.09	w : 0.09	e : 0.07	v : 0.07	f : 0.07	i : 0.03	y : 0.01	h : 0.01	] : 0.01	= : 0.01	
d : 0.24	c : 0.15	g : 0.13	f : 0.13	e : 0.07	] : 0.05	i : 0.03	w : 0.03	4 : 0.01	y : 0.01	3 : 0.01	b : 0.01	h : 0.01	a : 0.01	= : 0.01	
d : 0.26	f : 0.16	g : 0.15	e : 0.09	] : 0.07	2 : 0.07	i : 0.03	3 : 0.03	4 : 0.01	y : 0.01	h : 0.01	= : 0.01	c : 0.01	
f : 0.18	g : 0.15	d : 0.13	e : 0.09	2 : 0.09	] : 0.05	h : 0.03	i : 0.03	a : 0.03	3 : 0.03	b : 0.03	= : 0.03	4 : 0.01	y : 0.01	c : 0.01	
f : 0.24	g : 0.15	d : 0.09	] : 0.07	b : 0.07	2 : 0.07	i : 0.05	h : 0.03	a : 0.03	e : 0.03	= : 0.03	4 : 0.01	c : 0.01	3 : 0.01	6 : 0.01	
f : 0.22	g : 0.15	i : 0.09	d : 0.09	] : 0.07	2 : 0.07	h : 0.05	c : 0.05	b : 0.03	e : 0.03	= : 0.03	a : 0.01	4 : 0.01	6 : 0.01	
f : 0.18	c : 0.13	d : 0.11	i : 0.09	g : 0.07	] : 0.07	e : 0.07	b : 0.05	h : 0.05	2 : 0.03	= : 0.03	: : 0.01	4 : 0.01	6 : 0.01	
f : 0.15	c : 0.15	d : 0.11	i : 0.09	g : 0.07	e : 0.07	b : 0.05	] : 0.05	h : 0.03	6 : 0.03	7 : 0.03	= : 0.03	2 : 0.01	: : 0.01	3 : 0.01	4 : 0.01	

#score	1259.1058218388357
#seq	53
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_UTR_m3_run1.txt

#BEAR
d[eeeeepppppppeeeee]dd	chr17:46052789-46053038(+)$1	249	190	212	13.6737
b[bbcccpppppppccc>>>>>	chr21:46915173-46915403(+)$1	230	101	123	14.1398
eee[cccpppppppccc]eeee	chr21:46915171-46915373(+)$1	202	10	32	15.1767
ddeeeeepppppppeeeee888	chr16:52580569-52580815(-)$1	246	71	93	12.7839
g!!ddddpppppppdddd]ggg	chr14:35747709-35748024(+)$1	315	168	190	14.6083
eee[arrrrrrrrraeeeee]b	chrX:48433498-48433774(+)$1	276	232	254	10.3181
ccc!!bbpppppppbb22ccc5	chr9:116999160-116999402(+)$1	242	187	209	13.1420
eeeecccpppppppccc]eeee	chr19:24216173-24216521(+)$1	348	302	324	14.9109
""eeeeepppppppeeeee333	chr15:42129352-42129669(+)$1	317	43	65	14.5625
[ffffffpppppppffffff44	chr11:129991565-129991802(+)$1	237	136	158	14.2782
ddd[cccpppppppccc]dddd	chr9:100818961-100819252(+)$1	291	235	257	14.5422
h[bb!!apppppppa]bb]hhh	chr2:128180564-128180784(+)$1	220	173	195	12.7052
ii[bbbbpppppppbb]bb]ii	chr19:1360067-1360399(+)$1	332	20	42	12.8737
d[a[cccpppppppccca]ddd	chr9:117037888-117038148(+)$1	260	177	199	15.2224
[ffffffpppppppffffff55	chr2:71357672-71357977(+)$1	305	133	155	12.8866
ffffcccpppppppccc]ffff	chr17:37617904-37618125(+)$1	221	28	50	15.1468
$$$$cccpppppppccc=====	chr11:14521142-14521444(-)$1	302	87	109	15.0019
cccddddpppppppdddd]ccc	chr5:78373202-78373526(+)$1	324	284	306	14.2282
[ffffffrrrrrrrrrffffff	chr1:2125078-2125387(-)$1	309	167	189	10.4109
g[addddpppppppdddd4444	chr17:66539758-66540039(+)$1	281	227	249	14.8712
ffeeeeepppppppeeeee]ff	chr1:53377136-53377420(-)$1	284	50	72	13.7519
+++ddddpppppppddddffff	chr3:184099255-184099512(+)$1	257	89	111	12.1806
hhhhcccrrrrrrrrrccc666	chr16:841221-841474(+)$1	253	132	154	9.9166
c!!ddddrrrrrrrrrdddd22	chr9:117044456-117044662(+)$1	206	180	202	10.5372
gggggggpppppppggggggg]	chr19:19105847-19106166(-)$1	319	279	301	14.5644
bb[a[bbpppppppbb]a]bb2	chr19:45853768-45854038(-)$1	270	231	253	12.8887
=======ppppppp========	chr14:70238176-70238445(+)$1	269	69	91	15.0744
##eeeeepppppppeeeee555	chr5:176980112-176980428(-)$1	316	203	225	12.2185
gggggggpppppppgggggggG	chr4:1229637-1229942(-)$1	305	196	218	13.8946
!bb[cccrrrrrrrrrcccbb2	chr16:22337033-22337349(+)$1	316	111	133	10.7126
[ccccccpppppppccc4444c	chr16:457353-457644(+)$1	291	129	151	15.6532
"""ddddpppppppdddd22dd	chr11:67810936-67811207(+)$1	271	13	35	13.7822
ffffcccpppppppccc]ffff	chr17:37617925-37618155(+)$1	230	7	29	15.1468
fffffbbpppppppbb]fffff	chr20:57266422-57266709(+)$1	287	263	285	13.3177
###ddddpppppppdddd4444	chr9:139743573-139743849(+)$1	276	249	271	14.7601
f[bbcccpppppppccc]bb22	chr12:72056719-72057048(-)$1	329	209	231	14.4456
eeeecccpppppppccc333ee	chr12:56490260-56490485(+)$1	225	136	158	15.2948
gggggggrrrrrrrrrgggggg	chr3:48445743-48445997(-)$1	254	29	51	10.9991
cc!!cccpppppppccc22ccc	chr11:126145864-126146227(+)$1	363	297	319	15.4941
c[a[cccpppppppccc]a]cc	chr6:30584571-30584873(-)$1	302	37	59	15.8951
iii[cccpppppppccciiiii	chr2:232576581-232576787(+)$1	206	6	28	15.6314
cc[ddddpppppppdddd]ccc	chr20:3893130-3893382(+)$1	252	141	163	14.3994
iiiiirrrrrrrrriiiiiiii	chr17:47005906-47006180(+)$1	274	126	148	10.8543
))))cccpppppppccc333gg	chr9:117031420-117031672(+)$1	252	17	39	14.0270
e####bbpppppppbb22eeee	chr16:89350981-89351318(-)$1	337	154	176	13.1979
ff!!arrrrrrrrra22fffff	chr10:5025122-5025498(+)$1	376	54	76	10.2890
ggggg[apppppppa]gggggg	chr5:172755106-172755408(-)$1	302	24	46	14.5522
eeeee[apppppppa]eeeee2	chr16:89348866-89349129(-)$1	263	219	241	13.8215
ccc[cccpppppppcccccc33	chr1:21113569-21113904(-)$1	335	39	61	15.8755
fff[cccpppppppcccfffff	chr16:89346553-89346829(-)$1	276	18	40	15.2238
ee[ddddpppppppdddd]eee	chr6:33164137-33164457(-)$1	320	291	313	13.9688
ddd[cccpppppppcccdddd]	chr16:16248442-16248744(-)$1	302	220	242	14.5880
fffffffpppppppffffff33	chr20:2820860-2821126(-)$1	266	236	258	14.2372
cc!!cccpppppppccc]cccb	chr6:167412764-167413112(+)$1	348	223	245	15.4599
ccc[cccpppppppccc22ccc	chr14:73569933-73570260(+)$1	327	206	228	15.3720

#otherMatches

#Seq PSSM
UUGACGUGUACCAGGCGUCUGU	chr17:46052789-46053038(+)$1	249	190	212	13.6737
CGCCCCGGGAUGAACGGAUUGA	chr21:46915173-46915403(+)$1	230	101	123	14.1398
CUGGCGUGGGGCUAACGGCAGG	chr21:46915171-46915373(+)$1	202	10	32	15.1767
ACGCGCCACCCCCGGGCGCCCU	chr16:52580569-52580815(-)$1	246	71	93	12.7839
CAUGAAGUAGCUUCCUUUGGAG	chr14:35747709-35748024(+)$1	315	168	190	14.6083
UCAAGGAGUAUUAACUGAAAAG	chrX:48433498-48433774(+)$1	276	232	254	10.3181
CACACUCUCCAACUGAUCGUGU	chr9:116999160-116999402(+)$1	242	187	209	13.1420
GCGGGACUGCCUUCGUCACCGC	chr19:24216173-24216521(+)$1	348	302	324	14.9109
GAGCCAGCCCCUCCCUGGCCAG	chr15:42129352-42129669(+)$1	317	43	65	14.5625
AAAGGUAACUCUUCUACUUUGA	chr11:129991565-129991802(+)$1	237	136	158	14.2782
CCAAGCGCAUGAUCCGCAUGGC	chr9:100818961-100819252(+)$1	291	235	257	14.5422
UGCCAGCGCGGUGAGGGGGAGA	chr2:128180564-128180784(+)$1	220	173	195	12.7052
CCUGUGCAGUGAACGUAACCGG	chr19:1360067-1360399(+)$1	332	20	42	12.8737
UUGCAGCGCCUGGAGCUCUGGG	chr9:117037888-117038148(+)$1	260	177	199	15.2224
AGGUCUGGCGUCGACGGACCCU	chr2:71357672-71357977(+)$1	305	133	155	12.8866
GCCCGCGUAGUCCUCGCAGGGC	chr17:37617904-37618125(+)$1	221	28	50	15.1468
AUAGCCGGAGUAGACGGAGCCG	chr11:14521142-14521444(-)$1	302	87	109	15.0019
UCUGAUUGAGAGAAGAUCAAGA	chr5:78373202-78373526(+)$1	324	284	306	14.2282
CACCUGGAAUCCCCCGCCAGGU	chr1:2125078-2125387(-)$1	309	167	189	10.4109
CGAUGGCACGGCAAGUCAGGAA	chr17:66539758-66540039(+)$1	281	227	249	14.8712
GGGCUGGGGAUGGGCUGGCACU	chr1:53377136-53377420(-)$1	284	50	72	13.7519
GCAUCGCAGUUAUAGCGACCGC	chr3:184099255-184099512(+)$1	257	89	111	12.1806
AGCGACCGAAGCAGAAGGUGAG	chr16:841221-841474(+)$1	253	132	154	9.9166
GCCUGCGUCCCUCCCCCGCAUC	chr9:117044456-117044662(+)$1	206	180	202	10.5372
CUUGGCUCCUUCACAGCCAAGA	chr19:19105847-19106166(-)$1	319	279	301	14.5644
GUUCUGCGUCACCAGCUGUGCC	chr19:45853768-45854038(-)$1	270	231	253	12.8887
CUUGCUAAAAAUUCUGGUAAGU	chr14:70238176-70238445(+)$1	269	69	91	15.0744
GCAGCCAGAAGGCAUGGCUCUU	chr5:176980112-176980428(-)$1	316	203	225	12.2185
AUCGGCACCCAGCCUGCUGAUG	chr4:1229637-1229942(-)$1	305	196	218	13.8946
ACCACGCGUUGCUGGAGCGGGA	chr16:22337033-22337349(+)$1	316	111	133	10.7126
UCCGAGCGCCCCCAGCUGUCAU	chr16:457353-457644(+)$1	291	129	151	15.6532
GAGCACCCCGUGACGGUGAGCA	chr11:67810936-67811207(+)$1	271	13	35	13.7822
GCCCGCGUAGUCCUCGCAGGGC	chr17:37617925-37618155(+)$1	230	7	29	15.1468
UGGUGGAAAACCUCUCACACCA	chr20:57266422-57266709(+)$1	287	263	285	13.3177
CUCCCGCAGUACAAGCGGCCCC	chr9:139743573-139743849(+)$1	276	249	271	14.7601
CAGCAGCAGUCAGAGCUGGCGA	chr12:72056719-72057048(-)$1	329	209	231	14.4456
UGUGCACAAAGUGAGUGACCCA	chr12:56490260-56490485(+)$1	225	136	158	15.2948
GGCCCAGAAGAUGCAGCUGGGC	chr3:48445743-48445997(-)$1	254	29	51	10.9991
UGACAUCGAAGUUGGAUAGCgu	chr11:126145864-126146227(+)$1	363	297	319	15.4941
GAGUGUUUUGAAGCAACCCGUA	chr6:30584571-30584873(-)$1	302	37	59	15.8951
UCUGUCGAGGAGAAUGAGGAAA	chr2:232576581-232576787(+)$1	206	6	28	15.6314
UGGCUUCAAGGUAAGGGGGCAU	chr20:3893130-3893382(+)$1	252	141	163	14.3994
GGCUUGGGGAACGGAAGUUUAU	chr17:47005906-47006180(+)$1	274	126	148	10.8543
AGAGCUGGUGGAAACAGGAAGG	chr9:117031420-117031672(+)$1	252	17	39	14.0270
CAGGAGCACAGGAAGCGAGCCU	chr16:89350981-89351318(-)$1	337	154	176	13.1979
gucucagagucuacgucacucc	chr10:5025122-5025498(+)$1	376	54	76	10.2890
UCUCCGGAGAGCUACGGGAGGG	chr5:172755106-172755408(-)$1	302	24	46	14.5522
AGGAGAGGCACAGACACUCCUC	chr16:89348866-89349129(-)$1	263	219	241	13.8215
CCCACGCGCGggaggcggggcc	chr1:21113569-21113904(-)$1	335	39	61	15.8755
GCCAUCUCCACCUCAGAGGCGG	chr16:89346553-89346829(-)$1	276	18	40	15.2238
GGGAGGCAGUCUAGGUCUGUUC	chr6:33164137-33164457(-)$1	320	291	313	13.9688
AGCUGCAGUACAAGUGUGCUGA	chr16:16248442-16248744(-)$1	302	220	242	14.5880
GUCGCGGGUGAACACCGCGGAG	chr20:2820860-2821126(-)$1	266	236	258	14.2372
CUGAACCGCAUCAAGGUGAGGC	chr6:167412764-167413112(+)$1	348	223	245	15.4599
GAUAGAGAAAGGAGCUCAGAUC	chr14:73569933-73570260(+)$1	327	206	228	15.3720

#DB
(.(((((.......))))).))	chr17:46052789-46053038(+)$1	1	190	212	13.6737
(.(((((.......))).....	chr21:46915173-46915403(+)$1	1	101	123	14.1398
(((.(((.......))).))))	chr21:46915171-46915373(+)$1	1	10	32	15.1767
(((((((.......)))))...	chr16:52580569-52580815(-)$1	1	71	93	12.7839
(..((((.......)))).)))	chr14:35747709-35748024(+)$1	1	168	190	14.6083
(((.(.........)))))).)	chrX:48433498-48433774(+)$1	1	232	254	10.3181
(((..((.......))..))).	chr9:116999160-116999402(+)$1	1	187	209	13.1420
(((((((.......))).))))	chr19:24216173-24216521(+)$1	1	302	324	14.9109
..(((((.......)))))...	chr15:42129352-42129669(+)$1	1	43	65	14.5625
.((((((.......))))))..	chr11:129991565-129991802(+)$1	1	136	158	14.2782
(((.(((.......))).))))	chr9:100818961-100819252(+)$1	1	235	257	14.5422
(.((..(.......).)).)))	chr2:128180564-128180784(+)$1	1	173	195	12.7052
((.((((.......)).)).))	chr19:1360067-1360399(+)$1	1	20	42	12.8737
(.(.(((.......)))).)))	chr9:117037888-117038148(+)$1	1	177	199	15.2224
.((((((.......))))))..	chr2:71357672-71357977(+)$1	1	133	155	12.8866
(((((((.......))).))))	chr17:37617904-37618125(+)$1	1	28	50	15.1468
....(((.......))))))))	chr11:14521142-14521444(-)$1	1	87	109	15.0019
(((((((.......)))).)))	chr5:78373202-78373526(+)$1	1	284	306	14.2282
.((((((.........))))))	chr1:2125078-2125387(-)$1	1	167	189	10.4109
(.(((((.......))))....	chr17:66539758-66540039(+)$1	1	227	249	14.8712
(((((((.......))))).))	chr1:53377136-53377420(-)$1	1	50	72	13.7519
...((((.......))))))))	chr3:184099255-184099512(+)$1	1	89	111	12.1806
(((((((.........)))...	chr16:841221-841474(+)$1	1	132	154	9.9166
(..((((.........))))..	chr9:117044456-117044662(+)$1	1	180	202	10.5372
(((((((.......))))))).	chr19:19105847-19106166(-)$1	1	279	301	14.5644
((.(.((.......)).).)).	chr19:45853768-45854038(-)$1	1	231	253	12.8887
(((((((.......))))))))	chr14:70238176-70238445(+)$1	1	69	91	15.0744
..(((((.......)))))...	chr5:176980112-176980428(-)$1	1	203	225	12.2185
(((((((.......))))))))	chr4:1229637-1229942(-)$1	1	196	218	13.8946
.((.(((.........))))).	chr16:22337033-22337349(+)$1	1	111	133	10.7126
.((((((.......)))....)	chr16:457353-457644(+)$1	1	129	151	15.6532
...((((.......))))..))	chr11:67810936-67811207(+)$1	1	13	35	13.7822
(((((((.......))).))))	chr17:37617925-37618155(+)$1	1	7	29	15.1468
(((((((.......)).)))))	chr20:57266422-57266709(+)$1	1	263	285	13.3177
...((((.......))))....	chr9:139743573-139743849(+)$1	1	249	271	14.7601
(.(((((.......))).))..	chr12:72056719-72057048(-)$1	1	209	231	14.4456
(((((((.......)))...))	chr12:56490260-56490485(+)$1	1	136	158	15.2948
(((((((.........))))))	chr3:48445743-48445997(-)$1	1	29	51	10.9991
((..(((.......)))..)))	chr11:126145864-126146227(+)$1	1	297	319	15.4941
(.(.(((.......))).).))	chr6:30584571-30584873(-)$1	1	37	59	15.8951
(((.(((.......))))))))	chr2:232576581-232576787(+)$1	1	6	28	15.6314
((.((((.......)))).)))	chr20:3893130-3893382(+)$1	1	141	163	14.3994
(((((.........))))))))	chr17:47005906-47006180(+)$1	1	126	148	10.8543
....(((.......)))...))	chr9:117031420-117031672(+)$1	1	17	39	14.0270
(....((.......))..))))	chr16:89350981-89351318(-)$1	1	154	176	13.1979
((..(.........)..)))))	chr10:5025122-5025498(+)$1	1	54	76	10.2890
(((((.(.......).))))))	chr5:172755106-172755408(-)$1	1	24	46	14.5522
(((((.(.......).))))).	chr16:89348866-89349129(-)$1	1	219	241	13.8215
(((.(((.......))))))..	chr1:21113569-21113904(-)$1	1	39	61	15.8755
(((.(((.......))))))))	chr16:89346553-89346829(-)$1	1	18	40	15.2238
((.((((.......)))).)))	chr6:33164137-33164457(-)$1	1	291	313	13.9688
(((.(((.......))))))).	chr16:16248442-16248744(-)$1	1	220	242	14.5880
(((((((.......))))))..	chr20:2820860-2821126(-)$1	1	236	258	14.2372
((..(((.......))).))))	chr6:167412764-167413112(+)$1	1	223	245	15.4599
(((.(((.......)))..)))	chr14:73569933-73570260(+)$1	1	206	228	15.3720

#PSSM
c : 0.16	f : 0.14	e : 0.12	g : 0.10	d : 0.09	[ : 0.07	i : 0.05	b : 0.03	" : 0.03	h : 0.03	# : 0.03	$ : 0.01	+ : 0.01	= : 0.01	! : 0.01	) : 0.01	
f : 0.18	c : 0.14	[ : 0.12	e : 0.10	g : 0.07	d : 0.05	i : 0.05	# : 0.05	! : 0.03	" : 0.03	b : 0.03	$ : 0.01	+ : 0.01	h : 0.01	= : 0.01	) : 0.01	
e : 0.18	f : 0.14	! : 0.09	c : 0.09	b : 0.07	[ : 0.07	g : 0.07	a : 0.05	d : 0.03	# : 0.03	i : 0.03	$ : 0.01	+ : 0.01	h : 0.01	= : 0.01	" : 0.01	) : 0.01	
[ : 0.20	d : 0.16	e : 0.14	f : 0.12	b : 0.07	! : 0.07	g : 0.07	$ : 0.01	h : 0.01	a : 0.01	= : 0.01	c : 0.01	i : 0.01	) : 0.01	# : 0.01	
c : 0.40	d : 0.16	e : 0.10	f : 0.09	g : 0.07	a : 0.03	! : 0.03	b : 0.01	[ : 0.01	= : 0.01	i : 0.01	# : 0.01	
c : 0.40	d : 0.16	e : 0.09	b : 0.09	f : 0.07	r : 0.05	g : 0.05	[ : 0.03	! : 0.01	= : 0.01	
c : 0.40	d : 0.16	e : 0.09	b : 0.09	f : 0.07	r : 0.05	a : 0.05	g : 0.05	= : 0.01	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
c : 0.36	d : 0.14	e : 0.09	a : 0.09	b : 0.09	r : 0.09	f : 0.05	g : 0.03	= : 0.01	i : 0.01	
c : 0.36	d : 0.14	e : 0.10	b : 0.09	r : 0.09	f : 0.05	] : 0.05	g : 0.03	= : 0.01	i : 0.01	2 : 0.01	
c : 0.40	d : 0.16	e : 0.12	f : 0.07	g : 0.07	2 : 0.05	] : 0.05	b : 0.01	= : 0.01	i : 0.01	
d : 0.18	] : 0.14	e : 0.12	f : 0.12	2 : 0.07	g : 0.07	c : 0.05	b : 0.03	a : 0.03	= : 0.03	3 : 0.03	i : 0.03	> : 0.01	4 : 0.01	
e : 0.18	f : 0.18	] : 0.12	c : 0.09	g : 0.07	d : 0.05	4 : 0.05	2 : 0.05	b : 0.03	= : 0.03	3 : 0.03	i : 0.03	> : 0.01	a : 0.01	
f : 0.18	c : 0.12	e : 0.10	g : 0.09	] : 0.07	d : 0.07	3 : 0.05	4 : 0.05	b : 0.05	= : 0.03	i : 0.03	> : 0.01	8 : 0.01	h : 0.01	6 : 0.01	5 : 0.01	2 : 0.01	
f : 0.14	c : 0.12	e : 0.10	g : 0.10	d : 0.09	4 : 0.07	3 : 0.05	i : 0.05	5 : 0.03	= : 0.03	2 : 0.03	b : 0.03	> : 0.01	8 : 0.01	] : 0.01	h : 0.01	6 : 0.01	
f : 0.14	c : 0.10	e : 0.09	2 : 0.09	d : 0.07	g : 0.07	5 : 0.05	3 : 0.05	4 : 0.05	i : 0.05	b : 0.03	= : 0.03	] : 0.03	> : 0.01	8 : 0.01	h : 0.01	6 : 0.01	G : 0.01	

#score	757.5119342336728
#seq	55
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_transcript_m1_run1.txt

#BEAR
a[eeeee!!ddddbboooooobb]dddd22eeeee22a]e	chr1:36788782-36789063(+)$1	281	199	239	13.9067
gggggg[a[bb[cccooooooccc]bb]a22ggggggg]g	chr19:18547588-18547846(-)$1	258	116	156	16.6877
fff$$$$$ccc[ccclllccc]ccc4444ffffff4444e	chr8:68497605-68497858(-)$1	253	60	100	12.6568
"""eeeee!!eeeeeooooooeeeee4444eeeee22bb2	chr10:21823278-21823534(+)$1	256	177	217	13.9113
c!!gggggggacccbblllbb]ccc]a]ggggggg22ccc	chr17:80188099-80188371(+)$1	272	93	133	14.0858
!!ccc####a[ddddnnnnndddd]a333ccc22a22fff	chr5:134260167-134260370(+)$1	203	107	147	14.8135
b[bb[ffffff!!bboooooobb333ffffff]bb]bb33	chr6:170123960-170124248(-)$1	288	71	111	13.8641
####dddd!!a[cccooooooccc]a333dddd333ccc]	chr21:45739352-45739651(+)$1	299	64	104	18.1369
eeeee####dddd[bboooooobb]dddd]eeeee22ddd	chr5:1099248-1099548(-)$1	300	37	77	13.4347
cffffff"""a[cccxxxxxxxxxxxxxxxccc]a333ff	chr5:134263528-134263773(+)$1	245	57	97	12.2230
c!!bb[eeeee[cccrrrrrrrrrccceeeee]bb22ccc	chr7:2677445-2677696(+)$1	251	121	161	11.4447
==========[eeeeellleeeee]============]dd	chr4:140097423-140097701(-)$1	278	140	180	13.1331
"==========[cccmmmmccc>>>>>>>>>>>>======	chr16:447243-447497(+)$1	254	80	120	12.3369
"gggggggbb[ddddooooooddddbb]ggggggg4444c	chr22:51122429-51122764(+)$1	335	275	315	14.8571
gggg!!a[ccc[bboooooobb]ccca22ggggggg4444	chr14:104165101-104165367(+)$1	266	68	108	15.2003
bbb[bb!!ccc[cccooooooccc]ccc22bbbb]bb]ab	chr13:113764817-113765117(+)$1	300	20	60	13.7287
dd!!eeeee"""cccooooooccc333eeeee333dddd:	chr7:107594041-107594288(-)$1	247	188	228	15.3827
!!ccc####a[ddddnnnnndddd]a333ccc22a22fff	chr5:134260160-134260364(+)$1	204	114	154	14.8135
c[ffffff####cccooooooccc]ffffff]ccc]====	chr21:47560063-47560286(-)$1	223	132	172	16.1256
gggggggffffff[aooooooa]ffffff333ggggggg2	chr10:21785873-21786177(-)$1	304	173	213	13.8441
eeeeeee$$$$$cccooooooccc22eeeee]eeeee333	chr18:77674907-77675157(-)$1	250	189	229	14.5553
iiiiiii[ccc!!bboooooobb4444ccc]iiiiiiiii	chr14:89826250-89826527(-)$1	277	17	57	17.5673
ggggg!!eeeee[bboooooobb22eeeeegggggggfff	chr12:62919644-62919980(+)$1	336	107	147	14.0879
####ccc[ccc"""bbmmmmbb4444ccc]ccc4444ccc	chrM:1572-1814(+)$1	242	189	229	15.2106
ggggccc[ccc[cccccclllccc22ccc]cccccc]ggg	chr2:54197821-54198044(-)$1	223	156	196	14.1728
bb[ccc!!ccc[ccclllccc]ccc22ccc]bb]a22ccc	chr14:102182444-102182705(-)$1	261	91	131	13.7477
gggggggccc!!a[cccmmmmccc]a22ccc22ggggggg	chr17:74380113-74380342(+)$1	229	127	167	13.1329
!bb!!ccc!!ddddcccmmmmccc]dddd333ccc22bb]	chr17:80394543-80394839(+)$1	296	50	90	12.3304
eeeee[ggggggg[aooooooa22ggggggg333eeeeec	chr18:77673048-77673310(-)$1	262	190	230	14.2766
####ccc[ccc"""bbmmmmbb4444ccc]ccc4444ccc	chrM:1637-1842(+)$1	205	124	164	15.2106
ddd"""a[ccca[bboooooobb]a]ccc]adddd22bb]	chr7:44836332-44836636(+)$1	304	36	76	14.9967
ggg####dddd[cccooooooccc22ddddgggggggfff	chr8:71315475-71315696(-)$1	221	57	97	15.7001
!==========[a!!ammmma22a]==========]ccc]	chr13:92000161-92000428(+)$1	267	171	211	15.3816
[==========[bboooooobb333==========22ddd	chr10:88854942-88855308(+)$1	366	266	306	17.3687
####ccc[ccc"""bbmmmmbb4444ccc]ccc4444ccc	chrM:1664-1867(+)$1	203	97	137	15.2106
eee[dddd[bb[cccooooooccc22bb]dddd]eeeee]	chrM:14272-14484(-)$1	212	113	153	14.8997
gggccc[bbbb!!cccnnnnnccc]bb]bb]ccc333ggg	chr5:14336543-14336783(+)$1	240	180	220	13.6677
:cccccc[ccc[ccclllcccccc]ccc]cccgggggggl	chr16:448826-449068(+)$1	242	120	160	13.0195
""iiiiiiiii[ddddmmmmdddd]iiiiiiiii4444dd	chr3:12329689-12330009(+)$1	320	259	299	13.8401
eee[dddd[bb[cccooooooccc22bb]dddd]eeeee]	chrM:14239-14451(-)$1	212	80	120	14.8997
fffff[a"""cccammmma]ccc333a]ffffff333eee	chrY:2713651-2713874(+)$1	223	128	168	13.1032
gggggg"""bb[ddddlllddddbb333ggggggg]gggg	chr16:89351016-89351325(-)$1	309	211	251	13.5723
iiiiiiii"""ddddnnnnndddd333iiiiiiiii:a[a	chr1:245026395-245026616(-)$1	221	71	111	13.3920
:==============nnnnn==============ccc[dd	chr16:447942-448197(+)$1	255	134	174	13.4205
e!!eeeee!!ccc[bboooooobb]ccc]eeeee22eeee	chr10:19571846-19572079(+)$1	233	132	172	14.5271
####ccc[ccc"""bbmmmmbb4444ccc]ccc4444ccc	chrM:1685-1891(+)$1	206	76	116	15.2106
e!!eeeee!!ccc[bboooooobb]ccc]eeeee22eeee	chr10:19571921-19572198(+)$1	277	57	97	14.5271
e[gggggggbb[cccooooooccc]bb]ggggggg22eee	chr19:893456-893690(+)$1	234	181	221	17.4518
+ccc!!ccc####bboooooobb4444ccc22ccc22a]f	chr16:88584175-88584465(+)$1	290	136	176	16.4626
ffff!!ccc"""cccooooooccc333ccc]ffffffBBZ	chr7:157679964-157680208(-)$1	244	143	183	13.7514
ggggggiiiiiiiiinnnnniiiiiiiii333gggggggD	chr7:2677900-2678156(+)$1	256	213	253	12.5480
eee[dddd[bb[cccooooooccc22bb]dddd]eeeee]	chrM:14232-14435(-)$1	203	64	104	14.8997
!!ccc####a[ddddnnnnndddd]a333ccc22a22fff	chr5:134260170-134260402(+)$1	232	104	144	14.8135
bb[bb!!ccc[bb[bboooooobb]bbccc333bb]bb]a	chr2:61411764-61412033(+)$1	269	203	243	12.8107
dd"""==========oooooo==========333dddd]h	chr5:1105783-1106041(-)$1	258	152	192	15.8321

#otherMatches

#Seq PSSM
CUCCGGGAAGGGAAGCUGCCUCUCUCCUcgcccggccgcc	chr1:36788782-36789063(+)$1	281	199	239	13.9067
GGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUCCCCC	chr19:18547588-18547846(-)$1	258	116	156	16.6877
GAUCUAACAAUAGAAGCCUUCAAUUUCUUAUCUACCGAGA	chr8:68497605-68497858(-)$1	253	60	100	12.6568
GAGCGGUGGGCUgccgggccgggcggggggcgccggggcg	chr10:21823278-21823534(+)$1	256	177	217	13.9113
GCGUCUGUCCCCCAGGGCCCCAUGGUGUGGACAGAGUCUG	chr17:80188099-80188371(+)$1	272	93	133	14.0858
GUUACUGGUUGAACAUUGUUUGUUGGUGUGUAUAUUGUAC	chr5:134260167-134260370(+)$1	203	107	147	14.8135
ggccggcccccgggcgggcgggcggagggggcggggccgg	chr6:170123960-170124248(-)$1	288	71	111	13.8641
GAAGAUCGAGGGAGGAAGGGGCCUGCGGGUGGUACAGGAG	chr21:45739352-45739651(+)$1	299	64	104	18.1369
GGCCCUGCUGUCCCCCGGAGGAGGUGGACUGGGUCGGGGC	chr5:1099248-1099548(-)$1	300	37	77	13.4347
GUUGUUGAUUUGGUUGAAAAAUAGUAGGGGGAUGGUGCUA	chr5:134263528-134263773(+)$1	245	57	97	12.2230
CACCCACAGAGUGCCAGUGCCUUCGGCCUCUGAGGAGGGU	chr7:2677445-2677696(+)$1	251	121	161	11.4447
CGGGGGGGGGCGCUGGACACCAGUUUCCUUCCCUGUCGUG	chr4:140097423-140097701(-)$1	278	140	180	13.1331
ccgcgcgccccggcggggACGCGGAGGGGAGGAAGGGGCG	chr16:447243-447497(+)$1	254	80	120	12.3369
Agaccagugugcccguuugcuugggacugcugguuuuagc	chr22:51122429-51122764(+)$1	335	275	315	14.8571
CUUCGGCACUGAUCGUGUAGGAACAGGAGGAGGGGGGCAG	chr14:104165101-104165367(+)$1	266	68	108	15.2003
GGGAGCACGGCAGGGAGGACACCCAGCCAGGCCCGCGAGC	chr13:113764817-113765117(+)$1	300	20	60	13.7287
CAGACCCAGAAGCCUGUGACAAGGAGACUGGGAGGUGUCU	chr7:107594041-107594288(-)$1	247	188	228	15.3827
GUUACUGGUUGAACAUUGUUUGUUGGUGUGUAUAUUGUAC	chr5:134260160-134260364(+)$1	204	114	154	14.8135
CACCCUGUGAGGCACGUGAAGGUGGACGGGGAGUGCUGGG	chr21:47560063-47560286(-)$1	223	132	172	16.1256
CGGACUCGUGUCCACAGUACAGAGGACAUGUAGGGUUCGG	chr10:21785873-21786177(-)$1	304	173	213	13.8441
ACCUUGGCCCUGGGUUUUAGUAUCACCCGAGUGUGAAUUC	chr18:77674907-77675157(-)$1	250	189	229	14.5553
UUGUGCAGUGGGGGCAGAAACGCAAGGCCAGUGUGCAGGG	chr14:89826250-89826527(-)$1	277	17	57	17.5673
GUCUCAGCACCAGCUAACUCAGGAAUGGUGGGGAUUGGUG	chr12:62919644-62919980(+)$1	336	107	147	14.0879
GAAACCUGGCGCAAUAGAUAUAGUACCGCAAGGGAAAGAU	chrM:1572-1814(+)$1	242	189	229	15.2106
cccccggagccgggcgggcgucccgagccgggcccgcggg	chr2:54197821-54198044(-)$1	223	156	196	14.1728
CAGUGGACAGACCUUGAUGAGUUCUCACCAGUGUGACUCU	chr14:102182444-102182705(-)$1	261	91	131	13.7477
CGGCGCCGACAGCACCCGCGGGGGCGAGGUCGUGGCGUCG	chr17:74380113-74380342(+)$1	229	127	167	13.1329
ACCUGGAUGUGCACGGCAAGGGUCAGUGCCAAGUUGUGGG	chr17:80394543-80394839(+)$1	296	50	90	12.3304
CAAGGAGAGGAUUUCAACUACGUCAGUCCUCACCCCUUGG	chr18:77673048-77673310(-)$1	262	190	230	14.2766
GAAACCUGGCGCAAUAGAUAUAGUACCGCAAGGGAAAGAU	chrM:1637-1842(+)$1	205	124	164	15.2106
CCCUUGGGCCGCGUCUCCUUUGAGGUCGGGCGGGCGGCGG	chr7:44836332-44836636(+)$1	304	36	76	14.9967
UGCGAGAGCUCAGGAGACGAGUCCCGGAGCGCGAGGCGGG	chr8:71315475-71315696(-)$1	221	57	97	15.7001
ggccggggcgggUCUCGGCCGUUGGCCGCCCCGGCGUGUG	chr13:92000161-92000428(+)$1	267	171	211	15.3816
ACCCUGGCCUGUCCUCUGGCGGCCUCAGGCCGGGGCCGGG	chr10:88854942-88855308(+)$1	366	266	306	17.3687
GAAACCUGGCGCAAUAGAUAUAGUACCGCAAGGGAAAGAU	chrM:1664-1867(+)$1	203	97	137	15.2106
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUG	chrM:14272-14484(-)$1	212	113	153	14.8997
UUUAUCAGGCUGCCCAUCAGCUGGAAGACCGGAUUCAAGA	chr5:14336543-14336783(+)$1	240	180	220	13.6677
AAAGGGUGAGGUGGCAGUGCCUCUGACCUCUUGCCUUUUG	chr16:448826-449068(+)$1	242	120	160	13.0195
GAGCCGGGGACACGGGGACCUCCGCGUCCCCGGCGGAGGU	chr3:12329689-12330009(+)$1	320	259	299	13.8401
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUG	chrM:14239-14451(-)$1	212	80	120	14.8997
CAAAGGUAUGUUGCACAAGUCAAGUGAGCUUUGUAAUUUC	chrY:2713651-2713874(+)$1	223	128	168	13.1032
GUCCAGCGCGGAGGGCGCUGUCCCCAAACUGGACAAGGAG	chr16:89351016-89351325(-)$1	309	211	251	13.5723
UCUCGGGGGGAGGGGAGAGGCCCCAGGUCCCGGGGCGGGC	chr1:245026395-245026616(-)$1	221	71	111	13.3920
UGUCCAGAUUCUGUGGGACAUACAGGGUCUGGGCUCCUCU	chr16:447942-448197(+)$1	255	134	174	13.4205
CCUGUGUAAAUGGUAUCAACCAAUCCCAGUACAUUUGCUU	chr10:19571846-19572079(+)$1	233	132	172	14.5271
GAAACCUGGCGCAAUAGAUAUAGUACCGCAAGGGAAAGAU	chrM:1685-1891(+)$1	206	76	116	15.2106
CCUGUGUAAAUGGUAUCAACCAAUCCCAGUACAUUUGCUU	chr10:19571921-19572198(+)$1	277	57	97	14.5271
cccaggcuggaaugcaauggcgcgaucuuagcuuguugca	chr19:893456-893690(+)$1	234	181	221	17.4518
gguggauggauaaaugagugggugaggccaggcgcagugg	chr16:88584175-88584465(+)$1	290	136	176	16.4626
GUCACUCUAUUUUAUUCUAAUAUGCAUUAGUUGACAGAUG	chr7:157679964-157680208(-)$1	244	143	183	13.7514
UGGCCUCCUUCCAGGCCAUUCCUGGAGGGUGAGGGCCAGC	chr7:2677900-2678156(+)$1	256	213	253	12.5480
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGGUUG	chrM:14232-14435(-)$1	203	64	104	14.8997
GUUACUGGUUGAACAUUGUUUGUUGGUGUGUAUAUUGUAC	chr5:134260170-134260402(+)$1	232	104	144	14.8135
GGGUAAAGGAAGUGUUUGAGUCAGGGCUCCGAAUGGCCGU	chr2:61411764-61412033(+)$1	269	203	243	12.8107
GACAUGGGGGGCUGGUCUCCUUUGGCCUUCCUUCUCAGAU	chr5:1105783-1106041(-)$1	258	152	192	15.8321

#DB
(.(((((..((((((......)).))))..)))))..).)	chr1:36788782-36789063(+)$1	1	199	239	13.9067
((((((.(.((.(((......))).)).)..))))))).)	chr19:18547588-18547846(-)$1	1	116	156	16.6877
(((.....(((.(((...))).)))....))))))....)	chr8:68497605-68497858(-)$1	1	60	100	12.6568
...(((((..(((((......)))))....)))))..)).	chr10:21823278-21823534(+)$1	1	177	217	13.9113
(..(((((((((((((...)).))).).)))))))..)))	chr17:80188099-80188371(+)$1	1	93	133	14.0858
..(((....(.((((.....)))).)...)))..)..)))	chr5:134260167-134260370(+)$1	1	107	147	14.8135
(.((.((((((..((......))...)))))).)).))..	chr6:170123960-170124248(-)$1	1	71	111	13.8641
....((((..(.(((......))).)...))))...))).	chr21:45739352-45739651(+)$1	1	64	104	18.1369
(((((....((((.((......)).)))).)))))..)))	chr5:1099248-1099548(-)$1	1	37	77	13.4347
(((((((...(.(((...............))).)...))	chr5:134263528-134263773(+)$1	1	57	97	12.2230
(..((.(((((.(((.........)))))))).))..)))	chr7:2677445-2677696(+)$1	1	121	161	11.4447
((((((((((.(((((...))))).)))))))))))).))	chr4:140097423-140097701(-)$1	1	140	180	13.1331
.((((((((((.(((....)))............))))))	chr16:447243-447497(+)$1	1	80	120	12.3369
.(((((((((.((((......)))))).)))))))....)	chr22:51122429-51122764(+)$1	1	275	315	14.8571
((((..(.(((.((......)).))))..)))))))....	chr14:104165101-104165367(+)$1	1	68	108	15.2003
(((.((..(((.(((......))).)))..)))).)).))	chr13:113764817-113765117(+)$1	1	20	60	13.7287
((..(((((...(((......)))...)))))...)))).	chr7:107594041-107594288(-)$1	1	188	228	15.3827
..(((....(.((((.....)))).)...)))..)..)))	chr5:134260160-134260364(+)$1	1	114	154	14.8135
(.((((((....(((......))).)))))).))).))))	chr21:47560063-47560286(-)$1	1	132	172	16.1256
(((((((((((((.(......).))))))...))))))).	chr10:21785873-21786177(-)$1	1	173	213	13.8441
(((((((.....(((......)))..))))).)))))...	chr18:77674907-77675157(-)$1	1	189	229	14.5553
(((((((.(((..((......))....))).)))))))))	chr14:89826250-89826527(-)$1	1	17	57	17.5673
(((((..(((((.((......))..))))))))))))(((	chr12:62919644-62919980(+)$1	1	107	147	14.0879
....(((.(((...((....))....))).)))....)))	chrM:1572-1814(+)$1	1	189	229	15.2106
(((((((.(((.((((((...)))..))).)))))).)))	chr2:54197821-54198044(-)$1	1	156	196	14.1728
((.(((..(((.(((...))).)))..))).)).)..)))	chr14:102182444-102182705(-)$1	1	91	131	13.7477
((((((((((..(.(((....))).)..)))..)))))))	chr17:74380113-74380342(+)$1	1	127	167	13.1329
.((..(((..(((((((....))).))))...)))..)).	chr17:80394543-80394839(+)$1	1	50	90	12.3304
(((((.(((((((.(......)..)))))))...))))))	chr18:77673048-77673310(-)$1	1	190	230	14.2766
....(((.(((...((....))....))).)))....)))	chrM:1637-1842(+)$1	1	124	164	15.2106
(((...(.((((.((......)).).))).)))))..)).	chr7:44836332-44836636(+)$1	1	36	76	14.9967
(((....((((.(((......)))..)))))))))))(((	chr8:71315475-71315696(-)$1	1	57	97	15.7001
.((((((((((.(..(....)..).)))))))))).))).	chr13:92000161-92000428(+)$1	1	171	211	15.3816
.((((((((((.((......))...))))))))))..)))	chr10:88854942-88855308(+)$1	1	266	306	17.3687
....(((.(((...((....))....))).)))....)))	chrM:1664-1867(+)$1	1	97	137	15.2106
(((.((((.((.(((......)))..)).)))).))))).	chrM:14272-14484(-)$1	1	113	153	14.8997
((((((.((((..(((.....))).)).)).)))...)))	chr5:14336543-14336783(+)$1	1	180	220	13.6677
.((((((.(((.(((...)))))).))).)))(((((((.	chr16:448826-449068(+)$1	1	120	160	13.0195
..(((((((((.((((....)))).)))))))))....))	chr3:12329689-12330009(+)$1	1	259	299	13.8401
(((.((((.((.(((......)))..)).)))).))))).	chrM:14239-14451(-)$1	1	80	120	14.8997
(((((.(...((((....).)))...).))))))...)))	chrY:2713651-2713874(+)$1	1	128	168	13.1032
((((((...((.((((...))))))...))))))).))))	chr16:89351016-89351325(-)$1	1	211	251	13.5723
((((((((...((((.....))))...))))))))).(.(	chr1:245026395-245026616(-)$1	1	71	111	13.3920
.((((((((((((((.....))))))))))))))(((.((	chr16:447942-448197(+)$1	1	134	174	13.4205
(..(((((..(((.((......)).))).)))))..))))	chr10:19571846-19572079(+)$1	1	132	172	14.5271
....(((.(((...((....))....))).)))....)))	chrM:1685-1891(+)$1	1	76	116	15.2106
(..(((((..(((.((......)).))).)))))..))))	chr10:19571921-19572198(+)$1	1	57	97	14.5271
(.(((((((((.(((......))).)).)))))))..)))	chr19:893456-893690(+)$1	1	181	221	17.4518
.(((..(((....((......))....)))..)))..).)	chr16:88584175-88584465(+)$1	1	136	176	16.4626
((((..(((...(((......)))...))).)))))))).	chr7:157679964-157680208(-)$1	1	143	183	13.7514
(((((((((((((((.....)))))))))...))))))))	chr7:2677900-2678156(+)$1	1	213	253	12.5480
(((.((((.((.(((......)))..)).)))).))))).	chrM:14232-14435(-)$1	1	64	104	14.8997
..(((....(.((((.....)))).)...)))..)..)))	chr5:134260170-134260402(+)$1	1	104	144	14.8135
((.((..(((.((.((......)).)))))...)).)).)	chr2:61411764-61412033(+)$1	1	203	243	12.8107
((...((((((((((......))))))))))...)))).)	chr5:1105783-1106041(-)$1	1	152	192	15.8321

#PSSM
g : 0.18	e : 0.16	! : 0.09	# : 0.09	" : 0.07	c : 0.07	b : 0.07	f : 0.05	d : 0.05	i : 0.03	: : 0.03	a : 0.01	= : 0.01	[ : 0.01	+ : 0.01	
g : 0.20	! : 0.12	e : 0.10	# : 0.09	= : 0.09	[ : 0.07	f : 0.07	b : 0.07	d : 0.05	" : 0.03	i : 0.03	c : 0.03	
g : 0.21	e : 0.12	f : 0.09	! : 0.09	c : 0.09	# : 0.09	= : 0.09	b : 0.05	i : 0.05	" : 0.03	[ : 0.03	d : 0.01	
g : 0.20	e : 0.12	c : 0.12	# : 0.10	= : 0.09	f : 0.07	[ : 0.07	b : 0.05	i : 0.05	! : 0.03	" : 0.03	$ : 0.01	
c : 0.20	g : 0.16	e : 0.14	= : 0.09	d : 0.07	! : 0.07	f : 0.05	b : 0.05	i : 0.05	" : 0.03	$ : 0.01	[ : 0.01	# : 0.01	
c : 0.16	g : 0.14	e : 0.10	= : 0.10	# : 0.09	! : 0.09	d : 0.07	f : 0.05	[ : 0.05	i : 0.05	$ : 0.01	b : 0.01	" : 0.01	
c : 0.16	e : 0.12	g : 0.10	= : 0.10	# : 0.09	d : 0.07	! : 0.07	i : 0.07	f : 0.05	a : 0.05	[ : 0.03	$ : 0.01	" : 0.01	
[ : 0.16	e : 0.10	= : 0.10	d : 0.09	c : 0.09	g : 0.07	# : 0.07	! : 0.05	f : 0.05	" : 0.05	i : 0.05	$ : 0.03	a : 0.01	b : 0.01	
c : 0.29	! : 0.10	= : 0.10	# : 0.09	[ : 0.07	" : 0.07	g : 0.05	e : 0.05	f : 0.03	b : 0.03	i : 0.03	$ : 0.01	d : 0.01	
c : 0.25	b : 0.14	= : 0.10	! : 0.09	" : 0.09	d : 0.05	a : 0.05	g : 0.03	f : 0.03	e : 0.03	# : 0.03	i : 0.03	$ : 0.01	
c : 0.27	b : 0.12	[ : 0.10	= : 0.09	d : 0.07	e : 0.05	a : 0.05	" : 0.05	f : 0.03	# : 0.03	i : 0.03	$ : 0.01	! : 0.01	g : 0.01	
[ : 0.36	d : 0.14	" : 0.10	c : 0.07	! : 0.07	e : 0.05	# : 0.03	= : 0.03	f : 0.01	$ : 0.01	g : 0.01	a : 0.01	i : 0.01	b : 0.01	
c : 0.41	d : 0.18	" : 0.07	! : 0.05	b : 0.05	e : 0.03	[ : 0.03	a : 0.03	= : 0.03	f : 0.01	g : 0.01	# : 0.01	i : 0.01	
c : 0.38	b : 0.14	d : 0.14	[ : 0.12	" : 0.07	e : 0.03	= : 0.03	! : 0.01	a : 0.01	i : 0.01	
c : 0.40	b : 0.27	d : 0.12	e : 0.03	o : 0.03	a : 0.03	= : 0.03	! : 0.01	m : 0.01	i : 0.01	
o : 0.45	b : 0.16	n : 0.10	c : 0.07	l : 0.05	m : 0.03	d : 0.03	x : 0.01	r : 0.01	e : 0.01	a : 0.01	
o : 0.52	m : 0.14	n : 0.12	l : 0.10	c : 0.05	x : 0.01	r : 0.01	
o : 0.52	m : 0.18	n : 0.12	l : 0.10	x : 0.01	r : 0.01	c : 0.01	
o : 0.52	m : 0.16	n : 0.12	l : 0.07	c : 0.05	x : 0.01	r : 0.01	a : 0.01	
o : 0.52	m : 0.14	n : 0.12	c : 0.07	b : 0.01	x : 0.01	r : 0.01	e : 0.01	l : 0.01	] : 0.01	d : 0.01	
o : 0.49	b : 0.12	d : 0.10	c : 0.09	m : 0.03	x : 0.01	r : 0.01	e : 0.01	l : 0.01	a : 0.01	n : 0.01	= : 0.01	i : 0.01	
c : 0.34	b : 0.21	d : 0.12	o : 0.07	] : 0.05	e : 0.03	a : 0.03	= : 0.03	x : 0.01	r : 0.01	2 : 0.01	i : 0.01	
c : 0.38	b : 0.18	d : 0.12	4 : 0.07	e : 0.03	] : 0.03	2 : 0.03	= : 0.03	x : 0.01	r : 0.01	> : 0.01	3 : 0.01	i : 0.01	
c : 0.38	d : 0.10	4 : 0.10	b : 0.09	3 : 0.05	] : 0.03	e : 0.03	2 : 0.03	= : 0.03	x : 0.01	r : 0.01	> : 0.01	f : 0.01	a : 0.01	i : 0.01	
] : 0.34	2 : 0.12	3 : 0.10	4 : 0.10	c : 0.09	d : 0.03	= : 0.03	e : 0.01	x : 0.01	> : 0.01	f : 0.01	g : 0.01	a : 0.01	b : 0.01	i : 0.01	
4 : 0.12	2 : 0.12	3 : 0.10	c : 0.10	b : 0.09	a : 0.09	= : 0.09	d : 0.05	e : 0.03	] : 0.03	f : 0.03	i : 0.03	x : 0.01	> : 0.01	g : 0.01	
c : 0.20	b : 0.14	3 : 0.14	= : 0.09	d : 0.07	4 : 0.07	a : 0.05	f : 0.05	e : 0.03	2 : 0.03	i : 0.03	x : 0.01	> : 0.01	g : 0.01	
c : 0.27	] : 0.10	3 : 0.09	= : 0.09	d : 0.07	e : 0.07	f : 0.05	b : 0.05	i : 0.05	4 : 0.03	2 : 0.03	x : 0.01	> : 0.01	g : 0.01	
c : 0.21	] : 0.10	g : 0.09	= : 0.09	3 : 0.07	f : 0.07	e : 0.07	2 : 0.05	d : 0.05	i : 0.05	4 : 0.03	a : 0.01	x : 0.01	> : 0.01	b : 0.01	
c : 0.18	] : 0.12	g : 0.10	e : 0.10	d : 0.09	= : 0.09	f : 0.07	2 : 0.05	3 : 0.05	i : 0.03	4 : 0.01	x : 0.01	> : 0.01	b : 0.01	
c : 0.20	e : 0.14	g : 0.14	= : 0.09	f : 0.07	d : 0.07	3 : 0.07	] : 0.07	2 : 0.03	i : 0.03	> : 0.01	b : 0.01	a : 0.01	
c : 0.20	g : 0.14	e : 0.12	3 : 0.10	d : 0.09	f : 0.07	= : 0.07	i : 0.05	b : 0.03	] : 0.03	2 : 0.03	> : 0.01	
g : 0.20	c : 0.18	e : 0.10	d : 0.09	2 : 0.07	= : 0.07	3 : 0.07	f : 0.05	i : 0.05	] : 0.03	b : 0.03	> : 0.01	
g : 0.21	e : 0.10	] : 0.09	c : 0.09	b : 0.07	3 : 0.07	= : 0.07	4 : 0.07	f : 0.05	2 : 0.05	i : 0.05	> : 0.01	d : 0.01	
g : 0.21	e : 0.14	a : 0.09	c : 0.09	4 : 0.09	3 : 0.07	= : 0.07	b : 0.05	f : 0.03	i : 0.03	d : 0.03	2 : 0.03	] : 0.01	
2 : 0.29	g : 0.14	4 : 0.12	] : 0.09	e : 0.09	3 : 0.07	= : 0.03	d : 0.03	i : 0.03	c : 0.03	b : 0.01	f : 0.01	
2 : 0.25	g : 0.14	4 : 0.14	e : 0.12	b : 0.05	c : 0.05	3 : 0.05	= : 0.05	d : 0.03	i : 0.01	] : 0.01	: : 0.01	f : 0.01	
c : 0.16	g : 0.14	e : 0.14	b : 0.09	f : 0.09	4 : 0.07	d : 0.07	a : 0.05	3 : 0.03	] : 0.03	= : 0.03	i : 0.01	[ : 0.01	B : 0.01	
c : 0.16	e : 0.14	g : 0.12	f : 0.10	d : 0.10	] : 0.09	4 : 0.05	b : 0.05	3 : 0.03	= : 0.03	a : 0.01	i : 0.01	[ : 0.01	B : 0.01	
c : 0.16	f : 0.12	] : 0.12	e : 0.10	g : 0.09	d : 0.09	2 : 0.03	3 : 0.03	= : 0.03	a : 0.03	4 : 0.01	b : 0.01	: : 0.01	i : 0.01	l : 0.01	Z : 0.01	D : 0.01	h : 0.01	

#score	794.1892547133637
#seq	55
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_CDS_m2_run2.txt

#BEAR
c^^^^^^^^^^^^^^^^^^^ccc	chr2:27657267-27657524(+)$1	257	139	162	12.8955
gggggggtttttttttttggggg	chr9:74359832-74360099(-)$1	267	74	97	19.7298
c"""eeeeesssssssssseeee	chr6:158487517-158487763(+)$1	246	161	184	14.1248
hhhdddduuuuuuuuuuuudddd	chr10:121341870-121342115(-)$1	245	69	92	20.9984
ffffffvvvvvvvvvvvvvffff	chr6:144814468-144814686(+)$1	218	35	58	19.2626
dd!!bbvvvvvvvvvvvvvbb22	chr2:232325124-232325376(-)$1	252	136	159	19.2302
ee[dddduuuuuuuuuuuudddd	chrX:128649640-128649862(-)$1	222	150	173	21.7125
ggggggguuuuuuuuuuuugggg	chr12:26878494-26878756(-)$1	262	154	177	21.0778
c[eeeeesssssssssseeeee]	chr22:36684243-36684488(-)$1	245	137	160	14.7591
gggggggyyyyyyyyyyyyyyyy	chr3:156876565-156876867(-)$1	302	194	217	17.8286
dbb[cccuuuuuuuuuuuuccc]	chr11:637281-637542(+)$1	261	20	43	21.2584
dddyyyyyyyyyyyyyyyydddd	chr2:232326423-232326691(-)$1	268	129	152	18.2137
c!!eeeeettttttttttteeee	chr11:62297544-62297769(-)$1	225	12	35	19.7787
dddbbxxxxxxxxxxxxxxxbb]	chr1:234565868-234566117(-)$1	249	31	54	14.5106
ff[dddduuuuuuuuuuuudddd	chr1:19481436-19481668(-)$1	232	59	82	21.7011
d!!ddddvvvvvvvvvvvvvddd	chr9:117014772-117015023(+)$1	251	24	47	20.4820
cc[ddddxxxxxxxxxxxxxxxd	chr12:103260270-103260539(-)$1	269	144	167	15.6340
bb[ddddtttttttttttdddd3	chr9:710782-711044(+)$1	262	53	76	20.3881
c!!ddddtttttttttttdddd2	chr11:62289397-62289628(-)$1	231	146	169	20.8141
!!eeeeesssssssssseeeee3	chr2:55570683-55570960(-)$1	277	12	35	14.7124
:ddddwwwwwwwwwwwwwwdddd	chr12:62919644-62919980(+)$1	336	64	87	19.1931
cccddddvvvvvvvvvvvvvddd	chr10:21827663-21827942(+)$1	279	237	260	20.1339
ddd[cccssssssssssccc]dd	chr20:31022419-31022662(+)$1	243	154	177	15.1140
gggggwwwwwwwwwwwwwwgggg	chr10:21823473-21823713(+)$1	240	47	70	19.9266
bb[cccvvvvvvvvvvvvvccc]	chr17:35634764-35634998(-)$1	234	66	89	20.3096
d[cccwwwwwwwwwwwwwwccc]	chr6:56380149-56380464(-)$1	315	133	156	20.2960
gggggggtttttttttttggggg	chr11:108191958-108192242(+)$1	284	19	42	19.7298
ffffddddssssssssssdddde	chr1:39916677-39916951(+)$1	274	61	84	14.7808
d^^^^^^^^^^^^^^^^^^dddd	chr2:32667098-32667355(+)$1	257	52	75	13.1213
ee[dddduuuuuuuuuuuudddd	chr2:170668077-170668321(+)$1	244	198	221	21.7125
ffffffvvvvvvvvvvvvvffff	chr6:144814486-144814692(+)$1	206	17	40	19.2626
:fffffftttttttttttfffff	chr9:116997788-116998032(+)$1	244	219	242	18.1809
ddd[ddddssssssssssdddd]	chr19:2270278-2270549(+)$1	271	125	148	15.1908
gggggwwwwwwwwwwwwwwgggg	chr4:83348506-83348757(-)$1	251	73	96	19.9266
:eeeeevvvvvvvvvvvvveeee	chr12:26839428-26839637(-)$1	209	164	187	19.0561
========ttttttttttt====	chr2:152291921-152292191(+)$1	270	177	200	19.5458
eee[cccssssssssssccc]ee	chr1:40776677-40776913(-)$1	236	27	50	15.0565
iiiiiiiuuuuuuuuuuuuiiii	chr2:54197726-54198021(-)$1	295	255	278	21.0016
###ddddyyyyyyyyyyyyyyyy	chrX:53585611-53585837(-)$1	226	96	119	18.0565
fff[cccssssssssssccc]ff	chr1:19490204-19490419(-)$1	215	25	48	14.8590
ddd[cccsssssssssscccddd	chr2:63086281-63086524(+)$1	243	21	44	15.2744
::ddddvvvvvvvvvvvvvdddd	chr12:53849568-53849780(+)$1	212	153	176	18.5722
f[eeeeewwwwwwwwwwwwwwee	chr11:47772703-47772940(-)$1	237	154	177	19.3928
dd!!bbvvvvvvvvvvvvvbb22	chr2:232325100-232325324(-)$1	224	84	107	19.2302
&&fffffftttttttttttffff	chr4:151842248-151842477(-)$1	229	142	165	17.4175
ee!!ccctttttttttttccc22	chr15:28510663-28510905(-)$1	242	14	37	20.4133
:ffffffuuuuuuuuuuuuffff	chrX:70783204-70783450(+)$1	246	89	112	19.4755
e"""cccuuuuuuuuuuuuccc4	chr21:27484217-27484506(-)$1	289	255	278	21.7145
ff[ddddtttttttttttdddd3	chr7:127670441-127670752(+)$1	311	70	93	20.6540
ccc[ddddssssssssssdddd]	chr9:116981979-116982209(+)$1	230	38	61	15.4092

#otherMatches

#Seq PSSM
CACAAGACGAUGAAUGAAAAGGU	chr2:27657267-27657524(+)$1	257	139	162	12.8955
GGGGAUUCAGCCGCUAAAAGUCU	chr9:74359832-74360099(-)$1	267	74	97	19.7298
GACUUUGGGGGAGACAAAAUCCA	chr6:158487517-158487763(+)$1	246	161	184	14.1248
CUUUGUGGAAUUUUAUGAACACA	chr10:121341870-121342115(-)$1	245	69	92	20.9984
UUGUCCAGAAACAGCAAACGGAC	chr6:144814468-144814686(+)$1	218	35	58	19.2626
GAAAUGGCCAAACAGAAAGCAGC	chr2:232325124-232325376(-)$1	252	136	159	19.2302
GAUCUCUUUAUAUGAAAAUGGAG	chrX:128649640-128649862(-)$1	222	150	173	21.7125
CCUUGCUGAAGAAACUACAGGUA	chr12:26878494-26878756(-)$1	262	154	177	21.0778
GACUCGGCCAACAAGAACCGGGA	chr22:36684243-36684488(-)$1	245	137	160	14.7591
GCCAGUUAAGAGGAAAAAGGUAA	chr3:156876565-156876867(-)$1	302	194	217	17.8286
GCCAUGGGGAACCGCAGCACCGC	chr11:637281-637542(+)$1	261	20	43	21.2584
CCAAAGCAGUUACCACACCUGGC	chr2:232326423-232326691(-)$1	268	129	152	18.2137
UGGCACCUGAAGAUGCCCAAGGU	chr11:62297544-62297769(-)$1	225	12	35	19.7787
GUGCAUAUUAAAUAAAACAUUGU	chr1:234565868-234566117(-)$1	249	31	54	14.5106
CAACAUGAAUUACUGCAAAUAUG	chr1:19481436-19481668(-)$1	232	59	82	21.7011
CCCUCUGCACCUGCCUCCCACAG	chr9:117014772-117015023(+)$1	251	24	47	20.4820
ACAUUGCCUACAACUACCGCCAG	chr12:103260270-103260539(-)$1	269	144	167	15.6340
GACAAGGAACAGAAAGACCCUUA	chr9:710782-711044(+)$1	262	53	76	20.3881
UGAAUCUGAAAGGUCCAAAGAUG	chr11:62289397-62289628(-)$1	231	146	169	20.8141
AAUCCUUGCCAAUAAAAAAGGAA	chr2:55570683-55570960(-)$1	277	12	35	14.7124
UUUCCCUUCUUCUCUAACAGGAA	chr12:62919644-62919980(+)$1	336	64	87	19.1931
GCACUCCUGUUGUGGUUUGUGGG	chr10:21827663-21827942(+)$1	279	237	260	20.1339
UGUACGUCAGAUCUACAGCGAAC	chr20:31022419-31022662(+)$1	243	154	177	15.1140
AGCACUAAUCGGCUUGCAUGUGU	chr10:21823473-21823713(+)$1	240	47	70	19.9266
CAUGUGUUCUCUAUUAAUUCGCU	chr17:35634764-35634998(-)$1	234	66	89	20.3096
ACAGAAACACAAUCAAUCAUCUC	chr6:56380149-56380464(-)$1	315	133	156	20.2960
CUGAAAACCUCUUCUUUAUUUUC	chr11:108191958-108192242(+)$1	284	19	42	19.7298
GGAAGCCCUGCUCUUUUCGGGUC	chr1:39916677-39916951(+)$1	274	61	84	14.7808
GUUACAGUUUUCAGAAUUUCAUG	chr2:32667098-32667355(+)$1	257	52	75	13.1213
CCAAUUUUUUAUUCAUUUUAAAU	chr2:170668077-170668321(+)$1	244	198	221	21.7125
UUGUCCAGAAACAGCAAACGGAC	chr6:144814486-144814692(+)$1	206	17	40	19.2626
AGGGUCCAUCAUGAGCAAGGACC	chr9:116997788-116998032(+)$1	244	219	242	18.1809
UCGUGGGCCCCGUUUUUCGCCCC	chr19:2270278-2270549(+)$1	271	125	148	15.1908
ACAAAUGAAAGAAGAGGAUUUUG	chr4:83348506-83348757(-)$1	251	73	96	19.9266
UGCAUCCCUUUUUGAACUAGAUG	chr12:26839428-26839637(-)$1	209	164	187	19.0561
GAGGUAGAUAUUCUUGUUUUUUG	chr2:152291921-152292191(+)$1	270	177	200	19.5458
CUGAAUCUUGGGAGGGUGGUGCA	chr1:40776677-40776913(-)$1	236	27	50	15.0565
GGCCCAGAUCAAAUGCAACCUGG	chr2:54197726-54198021(-)$1	295	255	278	21.0016
GAAUUCCUGAGGGAUGAGGAGCU	chrX:53585611-53585837(-)$1	226	96	119	18.0565
AGAUGCCUCAUUUCGUUGGUUUC	chr1:19490204-19490419(-)$1	215	25	48	14.8590
GAGCUUAUCAACAAACUUAACUU	chr2:63086281-63086524(+)$1	243	21	44	15.2744
UUUGGCUGGACCCACUAAUGCCA	chr12:53849568-53849780(+)$1	212	153	176	18.5722
UAUUAUUGGAAUACACAAACAAA	chr11:47772703-47772940(-)$1	237	154	177	19.3928
GAAAUGGCCAAACAGAAAGCAGC	chr2:232325100-232325324(-)$1	224	84	107	19.2302
AUGAGGAAAUCACUCCCAGUUCU	chr4:151842248-151842477(-)$1	229	142	165	17.4175
CUAUCUGUUUGAAGGCUCCAGUG	chr15:28510663-28510905(-)$1	242	14	37	20.4133
AGAUUCAAAUAACAAUUAAUGGA	chrX:70783204-70783450(+)$1	246	89	112	19.4755
AUUUGUUUUCAAAAAAUUUAACU	chr21:27484217-27484506(-)$1	289	255	278	21.7145
CACACCACCUUGCUGAACUGGUU	chr7:127670441-127670752(+)$1	311	70	93	20.6540
CUGAAGGUGACAACACUAACCUA	chr9:116981979-116982209(+)$1	230	38	61	15.4092

#DB
(...................)))	chr2:27657267-27657524(+)$1	1	139	162	12.8955
(((((((...........)))))	chr9:74359832-74360099(-)$1	1	74	97	19.7298
(...(((((..........))))	chr6:158487517-158487763(+)$1	1	161	184	14.1248
)))((((............))))	chr10:121341870-121342115(-)$1	1	69	92	20.9984
((((((.............))))	chr6:144814468-144814686(+)$1	1	35	58	19.2626
((..((.............))..	chr2:232325124-232325376(-)$1	1	136	159	19.2302
((.((((............))))	chrX:128649640-128649862(-)$1	1	150	173	21.7125
(((((((............))))	chr12:26878494-26878756(-)$1	1	154	177	21.0778
(.(((((..........))))).	chr22:36684243-36684488(-)$1	1	137	160	14.7591
(((((((................	chr3:156876565-156876867(-)$1	1	194	217	17.8286
(((.(((............))).	chr11:637281-637542(+)$1	1	20	43	21.2584
(((................))))	chr2:232326423-232326691(-)$1	1	129	152	18.2137
(..(((((...........))))	chr11:62297544-62297769(-)$1	1	12	35	19.7787
(((((...............)).	chr1:234565868-234566117(-)$1	1	31	54	14.5106
((.((((............))))	chr1:19481436-19481668(-)$1	1	59	82	21.7011
(..((((.............)))	chr9:117014772-117015023(+)$1	1	24	47	20.4820
((.((((...............)	chr12:103260270-103260539(-)$1	1	144	167	15.6340
((.((((...........)))).	chr9:710782-711044(+)$1	1	53	76	20.3881
(..((((...........)))).	chr11:62289397-62289628(-)$1	1	146	169	20.8141
..(((((..........))))).	chr2:55570683-55570960(-)$1	1	12	35	14.7124
.((((..............))))	chr12:62919644-62919980(+)$1	1	64	87	19.1931
(((((((.............)))	chr10:21827663-21827942(+)$1	1	237	260	20.1339
(((.(((..........))).))	chr20:31022419-31022662(+)$1	1	154	177	15.1140
(((((..............))))	chr10:21823473-21823713(+)$1	1	47	70	19.9266
((.(((.............))).	chr17:35634764-35634998(-)$1	1	66	89	20.3096
(.(((..............))).	chr6:56380149-56380464(-)$1	1	133	156	20.2960
(((((((...........)))))	chr11:108191958-108192242(+)$1	1	19	42	19.7298
))))((((..........))))(	chr1:39916677-39916951(+)$1	1	61	84	14.7808
(..................))))	chr2:32667098-32667355(+)$1	1	52	75	13.1213
((.((((............))))	chr2:170668077-170668321(+)$1	1	198	221	21.7125
((((((.............))))	chr6:144814486-144814692(+)$1	1	17	40	19.2626
.((((((...........)))))	chr9:116997788-116998032(+)$1	1	219	242	18.1809
(((.((((..........)))).	chr19:2270278-2270549(+)$1	1	125	148	15.1908
(((((..............))))	chr4:83348506-83348757(-)$1	1	73	96	19.9266
.(((((.............))))	chr12:26839428-26839637(-)$1	1	164	187	19.0561
((((((((...........))))	chr2:152291921-152292191(+)$1	1	177	200	19.5458
(((.(((..........))).))	chr1:40776677-40776913(-)$1	1	27	50	15.0565
(((((((............))))	chr2:54197726-54198021(-)$1	1	255	278	21.0016
...((((................	chrX:53585611-53585837(-)$1	1	96	119	18.0565
(((.(((..........))).))	chr1:19490204-19490419(-)$1	1	25	48	14.8590
(((.(((..........))))))	chr2:63086281-63086524(+)$1	1	21	44	15.2744
..((((.............))))	chr12:53849568-53849780(+)$1	1	153	176	18.5722
(.(((((..............))	chr11:47772703-47772940(-)$1	1	154	177	19.3928
((..((.............))..	chr2:232325100-232325324(-)$1	1	84	107	19.2302
..((((((...........))))	chr4:151842248-151842477(-)$1	1	142	165	17.4175
((..(((...........)))..	chr15:28510663-28510905(-)$1	1	14	37	20.4133
.((((((............))))	chrX:70783204-70783450(+)$1	1	89	112	19.4755
(...(((............))).	chr21:27484217-27484506(-)$1	1	255	278	21.7145
((.((((...........)))).	chr7:127670441-127670752(+)$1	1	70	93	20.6540
(((.((((..........)))).	chr9:116981979-116982209(+)$1	1	38	61	15.4092

#PSSM
d : 0.21	c : 0.16	f : 0.14	g : 0.12	e : 0.10	: : 0.10	b : 0.04	h : 0.02	! : 0.02	= : 0.02	i : 0.02	# : 0.02	& : 0.02	
f : 0.16	d : 0.16	g : 0.12	e : 0.10	! : 0.08	[ : 0.06	b : 0.06	c : 0.06	^ : 0.04	" : 0.04	h : 0.02	= : 0.02	i : 0.02	# : 0.02	: : 0.02	& : 0.02	
f : 0.14	[ : 0.14	d : 0.14	g : 0.12	! : 0.12	e : 0.10	c : 0.06	^ : 0.04	" : 0.04	h : 0.02	b : 0.02	= : 0.02	i : 0.02	# : 0.02	
d : 0.25	[ : 0.14	g : 0.12	f : 0.12	e : 0.10	! : 0.06	^ : 0.04	" : 0.04	c : 0.04	y : 0.02	b : 0.02	= : 0.02	i : 0.02	
d : 0.32	c : 0.18	g : 0.12	e : 0.12	f : 0.10	b : 0.06	^ : 0.04	y : 0.02	= : 0.02	i : 0.02	
d : 0.30	c : 0.16	e : 0.12	f : 0.10	g : 0.08	w : 0.08	^ : 0.04	b : 0.04	y : 0.02	x : 0.02	= : 0.02	i : 0.02	
d : 0.27	v : 0.14	c : 0.14	e : 0.10	g : 0.08	w : 0.08	f : 0.06	^ : 0.04	y : 0.02	x : 0.02	= : 0.02	i : 0.02	
u : 0.18	v : 0.18	t : 0.14	s : 0.12	w : 0.10	y : 0.06	d : 0.06	^ : 0.04	e : 0.04	x : 0.04	= : 0.02	f : 0.02	
t : 0.19	u : 0.18	v : 0.18	s : 0.18	w : 0.10	y : 0.06	^ : 0.04	x : 0.04	e : 0.02	
t : 0.19	s : 0.19	u : 0.18	v : 0.18	w : 0.10	y : 0.06	^ : 0.04	x : 0.04	
t : 0.19	s : 0.19	u : 0.18	v : 0.18	w : 0.10	y : 0.06	^ : 0.04	x : 0.04	
t : 0.19	s : 0.19	u : 0.18	v : 0.18	w : 0.10	y : 0.06	^ : 0.04	x : 0.04	
t : 0.19	s : 0.19	u : 0.18	v : 0.18	w : 0.10	y : 0.06	^ : 0.04	x : 0.04	
t : 0.19	s : 0.19	u : 0.18	v : 0.18	w : 0.10	y : 0.06	^ : 0.04	x : 0.04	
t : 0.19	s : 0.19	u : 0.18	v : 0.18	w : 0.10	y : 0.06	^ : 0.04	x : 0.04	
t : 0.19	s : 0.19	u : 0.18	v : 0.18	w : 0.10	y : 0.06	^ : 0.04	x : 0.04	
t : 0.19	s : 0.19	u : 0.18	v : 0.18	w : 0.10	y : 0.06	^ : 0.04	x : 0.04	
t : 0.19	u : 0.18	v : 0.18	w : 0.10	s : 0.08	c : 0.08	y : 0.06	^ : 0.04	e : 0.04	x : 0.04	
u : 0.18	v : 0.18	d : 0.12	w : 0.10	c : 0.10	y : 0.06	t : 0.06	^ : 0.04	g : 0.04	e : 0.04	x : 0.04	s : 0.02	f : 0.02	
d : 0.27	c : 0.18	g : 0.10	e : 0.10	f : 0.10	b : 0.04	y : 0.04	x : 0.04	v : 0.04	^ : 0.02	= : 0.02	i : 0.02	w : 0.02	
d : 0.34	c : 0.12	g : 0.10	e : 0.10	f : 0.10	b : 0.06	] : 0.06	y : 0.04	x : 0.02	= : 0.02	i : 0.02	w : 0.02	
d : 0.36	e : 0.14	f : 0.12	c : 0.10	g : 0.10	2 : 0.06	y : 0.04	b : 0.02	x : 0.02	= : 0.02	i : 0.02	
d : 0.25	] : 0.14	e : 0.12	f : 0.12	g : 0.10	2 : 0.08	3 : 0.06	y : 0.04	c : 0.02	= : 0.02	i : 0.02	4 : 0.02	

#score	921.1224415581781
#seq	50
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_CDS_m1_run1.txt

#BEAR
!!ddddyyyyyyyyyyyyyyyydddd]e	chr12:6692404-6692644(-)$1	240	123	151	20.0585
^^^^^^^^^^^^^^^^^^^^^eeeee33	chrM:9856-10085(+)$1	229	27	55	17.7305
^^^^^^^^^^^^^^^^^^^^^^^^^^ee	chrM:13255-13466(+)$1	211	167	195	17.3174
d::ffffffuuuuuuuuuuuuffffff:	chr1:39800589-39800871(+)$1	282	245	273	17.2189
hhhccccccuuuuuuuuuuuuccc]ccc	chr2:190339931-190340257(+)$1	326	288	316	20.2023
e!!ffffffvvvvvvvvvvvvvffffff	chr12:46357788-46358061(-)$1	273	43	71	19.4385
cc####cccuuuuuuuuuuuuccc333c	chr1:22033182-22033428(-)$1	246	9	37	22.3588
d[dddd[ccctttttttttttccc]ddd	chr5:33467644-33467905(+)$1	261	20	48	18.5330
bb"""ddddtttttttttttdddd22bb	chr12:6690356-6690607(-)$1	251	171	199	18.2114
eeccc[awwwwwwwwwwwwwwa]ccc]e	chr12:21789969-21790229(-)$1	260	20	48	20.2453
b[dddd[ccctttttttttttccc]ddd	chr6:35837484-35837745(-)$1	261	77	105	18.5226
d"""eeeeesssssssssseeeee]ddd	chr11:62298842-62299120(-)$1	278	226	254	14.3358
^^^^^^^^^^^^^^^^^^^^^^^ccc]c	chrM:10479-10691(+)$1	212	55	83	17.7716
HHHHeeeeeuuuuuuuuuuuueeeee::	chr10:105762224-105762495(+)$1	271	12	40	16.8791
ccc!!dddduuuuuuuuuuuudddd333	chrM:12513-12766(+)$1	253	221	249	21.3504
!!ccc[eeeeesssssssssseeeee]c	chr21:40571099-40571412(-)$1	313	207	235	14.9725
bb[ffffffyyyyyyyyyyyyyyyyfff	chr11:62291603-62291812(-)$1	209	114	142	18.7266
f%%%%%%ccctttttttttttcccffff	chr1:220152740-220153016(-)$1	276	212	240	16.5741
=^^^^^^^^^^^^^^^^^^^^=======	chr7:91631594-91631847(+)$1	253	162	190	17.0710
b[gggggggssssssssssggggggg]b	chrM:14452-14671(-)$1	219	1	29	13.0237
d:dddd[ddddssssssssssdddd333	chr2:55253846-55254193(-)$1	347	250	278	12.6709
hhhhhhhhvvvvvvvvvvvvvhhhhhhh	chr17:65900716-65900974(+)$1	258	83	111	15.8707
ccc!!ddddtttttttttttdddd4444	chr7:91623834-91624063(+)$1	229	151	179	19.4355
^^^^^^^^^^^^^^^^^^^^^eeeee]d	chrM:9790-10002(+)$1	212	57	85	17.6303
hhhhhhh^^^^^^^^^^^^^^^^^^^hh	chr8:101725257-101725496(-)$1	239	38	66	14.3876
eee^^^^^^^^^^^^^^^^^^eeeee]e	chr11:62294319-62294593(-)$1	274	175	203	16.9900
fff!!eeeeettttttttttteeeee]f	chr17:34171000-34171235(+)$1	235	58	86	19.3586
####ffffffxxxxxxxxxxxxxxxfff	chr7:27832583-27832810(+)$1	227	91	119	16.3341
c[dddd[bbtttttttttttbbdddd]c	chr4:13605609-13605939(-)$1	330	141	169	18.4223
dd!!eeeeeuuuuuuuuuuuueeeee22	chr7:91708343-91708627(+)$1	284	194	222	21.2443
g"""ffffffzzzzzzzzzzzzzzzzzf	chr8:30938619-30938886(+)$1	267	191	219	12.6003
cc"""ddddtttttttttttdddd333c	chr11:62288213-62288448(-)$1	235	92	120	19.8961
hhh####bbtttttttttttbb4444hh	chr1:214816305-214816544(+)$1	239	186	214	17.9512
####eeeeeuuuuuuuuuuuueeeee66	chr11:62293662-62293889(-)$1	227	78	106	21.2456
g[ccc[ccctttttttttttccc]ccc]	chr3:180665551-180665818(+)$1	267	67	95	19.3162
iiibb[bbvvvvvvvvvvvvvbb]bb]i	chr16:8997030-8997358(-)$1	328	77	105	18.6939
f[ffffffwwwwwwwwwwwwwwffffff	chr4:68358489-68358789(-)$1	300	225	253	18.9745
=========vvvvvvvvvvvvv======	chr14:61278600-61278930(+)$1	330	206	234	20.1418
b:::eeeeeuuuuuuuuuuuueeeee::	chr4:68383826-68384144(-)$1	318	162	190	17.0502
^^^^^^^^^^^^^^^^^^^^^^^^^^ee	chrM:13266-13496(+)$1	230	156	184	17.3174
e"""eeeeeuuuuuuuuuuuueeeee]e	chr1:171526286-171526511(+)$1	225	172	200	22.1856
::ccc[a^^^^^^^^^^^^^^^^^^a]c	chr8:53569110-53569406(-)$1	296	122	150	15.9339
'''bbccc^^^^^^^^^^^^^^^^^^^c	chrM:12784-12987(+)$1	203	36	64	15.2153
dddd!!eeeeerrrrrrrrreeeee22d	chr11:62298293-62298533(-)$1	240	126	154	10.8484

#otherMatches

#Seq PSSM
AAUCAUUAAACAGGAAGAAAGUGUGGAU	chr12:6692404-6692644(-)$1	240	123	151	20.0585
ACUUUACAUCCAAACAUCACUUUGGCUU	chrM:9856-10085(+)$1	229	27	55	17.7305
ACUCAAAACCAUACCUCUCACUUCAACC	chrM:13255-13466(+)$1	211	167	195	17.3174
UCAGAUGCUAAAGAAUUUAUCAGUAUCA	chr1:39800589-39800871(+)$1	282	245	273	17.2189
GUUAUUUCUGUUCUAAAAAUAAGAUAAU	chr2:190339931-190340257(+)$1	326	288	316	20.2023
UUGGGAGAAGGCAAACAUAAAAUUCUCU	chr12:46357788-46358061(-)$1	273	43	71	19.4385
GAUAAUGACUUUUUUUCAGCUGUUUUUU	chr1:22033182-22033428(-)$1	246	9	37	22.3588
UUGUUGGUGAAAAAGAGAAAAUCAGUGG	chr5:33467644-33467905(+)$1	261	20	48	18.5330
AUGCCAUACUAAAGACAAAUGUGUAAGU	chr12:6690356-6690607(-)$1	251	171	199	18.2114
acagagcaguagucaaagucaggucugg	chr12:21789969-21790229(-)$1	260	20	48	20.2453
UACCAUUGGCCAGGAUCAAACGCUUAUG	chr6:35837484-35837745(-)$1	261	77	105	18.5226
CCAAAGAUUAAAAUGCCCAAAUUUAGCA	chr11:62298842-62299120(-)$1	278	226	254	14.3358
AUCGCUCACACCUCAUAUCCUCCCUACU	chrM:10479-10691(+)$1	212	55	83	17.7716
CUGACACAGAAGACCAAGAAACUGUGGA	chr10:105762224-105762495(+)$1	271	12	40	16.8791
CCGCUAACAACCUAUUCCAACUGUUCAU	chrM:12513-12766(+)$1	253	221	249	21.3504
GAUGAAUCUGAAAACAGAGACUCAGAGU	chr21:40571099-40571412(-)$1	313	207	235	14.9725
AGUGAAAGGAUCCAAGUUUAAAAUGCCU	chr11:62291603-62291812(-)$1	209	114	142	18.7266
GACAACAUGGGUUUAGUAUUACCACCCC	chr1:220152740-220153016(-)$1	276	212	240	16.5741
GAUUGAAAAGCAAAGGAACACUUUUUCA	chr7:91631594-91631847(+)$1	253	162	190	17.0710
UGUAUGCUUUGUUUCUGUUGAGUGUGGG	chrM:14452-14671(-)$1	219	1	29	13.0237
AAACUAAUCACGAAAAAGAUAGUGAGAG	chr2:55253846-55254193(-)$1	347	250	278	12.6709
UGUUUUCAUUUACACCAGGUUUGGAAAC	chr17:65900716-65900974(+)$1	258	83	111	15.8707
CUCACUGCUAAUUUACAACAAGCAAGAA	chr7:91623834-91624063(+)$1	229	151	179	19.4355
UCCUCACUAUCUGCUUCAUCCGCCAACU	chrM:9790-10002(+)$1	212	57	85	17.6303
CGUGAAUGUUGUAUGGAAUAUCUUUGAU	chr8:101725257-101725496(-)$1	239	38	66	14.3876
GGCCCCAAAGUUGAUGUAAAUGCCCCCG	chr11:62294319-62294593(-)$1	274	175	203	16.9900
UCCCCUGGCCCCAUCCCCCUAGGCCGUG	chr17:34171000-34171235(+)$1	235	58	86	19.3586
UUCUUUCUAGGACAAGACUGAUACACUG	chr7:27832583-27832810(+)$1	227	91	119	16.3341
UGUUGAAGUCUAAAUCAAAAACUCAAGG	chr4:13605609-13605939(-)$1	330	141	169	18.4223
CAAAUAUUGGACAGAAGACAUCAAUGAA	chr7:91708343-91708627(+)$1	284	194	222	21.2443
AGGUACUAAAUAAAGAGGAAGCACAUUU	chr8:30938619-30938886(+)$1	267	191	219	12.6003
UGUACAUUUCAAAAGCCCACAAAUCUCC	chr11:62288213-62288448(-)$1	235	92	120	19.8961
CAGAAAAUGAACAGUGGCAACAGAAGCU	chr1:214816305-214816544(+)$1	239	186	214	17.9512
CUAAGUUCAAGAUGCCAGAGAUGAAUAU	chr11:62293662-62293889(-)$1	227	78	106	21.2456
AUGAAUGGAUAUAGGCAUUUUUUUUUCU	chr3:180665551-180665818(+)$1	267	67	95	19.3162
GUGCUUUCAUACAUAUUUUCAGAUAGUC	chr16:8997030-8997358(-)$1	328	77	105	18.6939
AACUUUUAGAUUUUAUUUUAAAUAGGAG	chr4:68358489-68358789(-)$1	300	225	253	18.9745
CUAAAAAGGAAGAAUAAGCAGGCUUUUU	chr14:61278600-61278930(+)$1	330	206	234	20.1418
GAUCAUCUCAGAAUAGAAUACGAGAUUC	chr4:68383826-68384144(-)$1	318	162	190	17.0502
ACUCAAAACCAUACCUCUCACUUCAACC	chrM:13266-13496(+)$1	230	156	184	17.3174
UACAGGGAUCCAGCAAGCACAGUCUUca	chr1:171526286-171526511(+)$1	225	172	200	22.1856
UAUCCAGGAAAAAGAAAAACAGUUACAG	chr8:53569110-53569406(-)$1	296	122	150	15.9339
GCAGAUGCCAACACAGCAGCCAUUCAAG	chrM:12784-12987(+)$1	203	36	64	15.2153
AGGUGGACAUCGAAGCCCCAGAUGUGAG	chr11:62298293-62298533(-)$1	240	126	154	10.8484

#DB
..((((................)))).)	chr12:6692404-6692644(-)$1	1	123	151	20.0585
.....................)))))..	chrM:9856-10085(+)$1	1	27	55	17.7305
..........................))	chrM:13255-13466(+)$1	1	167	195	17.3174
)..((((((............)))))).	chr1:39800589-39800871(+)$1	1	245	273	17.2189
(((((((((............))).)))	chr2:190339931-190340257(+)$1	1	288	316	20.2023
(..((((((.............))))))	chr12:46357788-46358061(-)$1	1	43	71	19.4385
((....(((............)))...)	chr1:22033182-22033428(-)$1	1	9	37	22.3588
(.((((.(((...........))).)))	chr5:33467644-33467905(+)$1	1	20	48	18.5330
((...((((...........))))..))	chr12:6690356-6690607(-)$1	1	171	199	18.2114
(((((.(..............).))).)	chr12:21789969-21790229(-)$1	1	20	48	20.2453
(.((((.(((...........))).)))	chr6:35837484-35837745(-)$1	1	77	105	18.5226
(...(((((..........))))).)))	chr11:62298842-62299120(-)$1	1	226	254	14.3358
.......................))).)	chrM:10479-10691(+)$1	1	55	83	17.7716
(((((((((............)))))..	chr10:105762224-105762495(+)$1	1	12	40	16.8791
(((..((((............))))...	chrM:12513-12766(+)$1	1	221	249	21.3504
..(((.(((((..........))))).)	chr21:40571099-40571412(-)$1	1	207	235	14.9725
((.((((((................)))	chr11:62291603-62291812(-)$1	1	114	142	18.7266
(......(((...........)))))))	chr1:220152740-220153016(-)$1	1	212	240	16.5741
(....................)))))))	chr7:91631594-91631847(+)$1	1	162	190	17.0710
(.(((((((..........))))))).)	chrM:14452-14671(-)$1	1	1	29	13.0237
).((((.((((..........))))...	chr2:55253846-55254193(-)$1	1	250	278	12.6709
((((((((.............)))))))	chr17:65900716-65900974(+)$1	1	83	111	15.8707
(((..((((...........))))....	chr7:91623834-91624063(+)$1	1	151	179	19.4355
.....................))))).)	chrM:9790-10002(+)$1	1	57	85	17.6303
(((((((...................))	chr8:101725257-101725496(-)$1	1	38	66	14.3876
(((..................))))).)	chr11:62294319-62294593(-)$1	1	175	203	16.9900
(((..(((((...........))))).)	chr17:34171000-34171235(+)$1	1	58	86	19.3586
....((((((...............)))	chr7:27832583-27832810(+)$1	1	91	119	16.3341
(.((((.((...........)))))).)	chr4:13605609-13605939(-)$1	1	141	169	18.4223
((..(((((............)))))..	chr7:91708343-91708627(+)$1	1	194	222	21.2443
(...((((((.................)	chr8:30938619-30938886(+)$1	1	191	219	12.6003
((...((((...........))))...)	chr11:62288213-62288448(-)$1	1	92	120	19.8961
(((....((...........))....))	chr1:214816305-214816544(+)$1	1	186	214	17.9512
....(((((............)))))..	chr11:62293662-62293889(-)$1	1	78	106	21.2456
(.(((.(((...........))).))).	chr3:180665551-180665818(+)$1	1	67	95	19.3162
(((((.((.............)).)).)	chr16:8997030-8997358(-)$1	1	77	105	18.6939
(.((((((..............))))))	chr4:68358489-68358789(-)$1	1	225	253	18.9745
(((((((((.............))))))	chr14:61278600-61278930(+)$1	1	206	234	20.1418
)...(((((............)))))..	chr4:68383826-68384144(-)$1	1	162	190	17.0502
..........................))	chrM:13266-13496(+)$1	1	156	184	17.3174
(...(((((............))))).)	chr1:171526286-171526511(+)$1	1	172	200	22.1856
..(((.(..................).)	chr8:53569110-53569406(-)$1	1	122	150	15.9339
...(((((...................)	chrM:12784-12987(+)$1	1	36	64	15.2153
((((..(((((.........)))))..)	chr11:62298293-62298533(-)$1	1	126	154	10.8484

#PSSM
d : 0.13	^ : 0.11	c : 0.11	b : 0.11	h : 0.09	e : 0.09	f : 0.06	! : 0.04	= : 0.04	# : 0.04	g : 0.04	H : 0.02	i : 0.02	: : 0.02	' : 0.02	
^ : 0.13	[ : 0.13	: : 0.09	h : 0.09	c : 0.09	! : 0.06	" : 0.06	b : 0.04	e : 0.04	# : 0.04	d : 0.04	H : 0.02	% : 0.02	f : 0.02	i : 0.02	= : 0.02	' : 0.02	
d : 0.13	^ : 0.13	c : 0.13	" : 0.11	h : 0.09	# : 0.06	: : 0.04	! : 0.04	f : 0.04	H : 0.02	[ : 0.02	% : 0.02	g : 0.02	e : 0.02	i : 0.02	= : 0.02	' : 0.02	
^ : 0.15	d : 0.13	c : 0.11	" : 0.11	f : 0.09	# : 0.09	! : 0.09	h : 0.04	b : 0.04	H : 0.02	% : 0.02	g : 0.02	= : 0.02	: : 0.02	
^ : 0.15	f : 0.13	e : 0.13	d : 0.11	c : 0.11	! : 0.09	# : 0.04	" : 0.04	h : 0.04	b : 0.04	% : 0.02	g : 0.02	= : 0.02	
d : 0.20	^ : 0.15	e : 0.15	f : 0.13	[ : 0.11	c : 0.04	# : 0.04	h : 0.04	% : 0.02	g : 0.02	= : 0.02	! : 0.02	
e : 0.20	^ : 0.15	f : 0.13	c : 0.09	[ : 0.09	d : 0.09	a : 0.04	h : 0.04	y : 0.02	% : 0.02	g : 0.02	# : 0.02	b : 0.02	= : 0.02	
^ : 0.20	e : 0.20	c : 0.15	f : 0.13	d : 0.11	b : 0.06	y : 0.02	w : 0.02	g : 0.02	h : 0.02	= : 0.02	
^ : 0.22	e : 0.20	c : 0.13	f : 0.11	d : 0.11	w : 0.04	v : 0.04	b : 0.04	y : 0.02	g : 0.02	= : 0.02	
^ : 0.22	u : 0.20	t : 0.13	v : 0.09	c : 0.06	e : 0.06	y : 0.04	w : 0.04	s : 0.04	f : 0.04	d : 0.02	
^ : 0.22	t : 0.22	u : 0.20	v : 0.09	y : 0.04	w : 0.04	s : 0.04	e : 0.04	d : 0.02	x : 0.02	z : 0.02	
^ : 0.22	t : 0.22	u : 0.20	v : 0.09	s : 0.09	y : 0.04	w : 0.04	x : 0.02	z : 0.02	r : 0.02	
^ : 0.22	t : 0.22	u : 0.20	v : 0.09	s : 0.09	y : 0.04	w : 0.04	x : 0.02	z : 0.02	r : 0.02	
^ : 0.22	t : 0.22	u : 0.20	v : 0.09	s : 0.09	y : 0.04	w : 0.04	x : 0.02	z : 0.02	r : 0.02	
^ : 0.22	t : 0.22	u : 0.20	v : 0.09	s : 0.09	y : 0.04	w : 0.04	x : 0.02	z : 0.02	r : 0.02	
^ : 0.22	t : 0.22	u : 0.20	v : 0.09	s : 0.09	y : 0.04	w : 0.04	x : 0.02	z : 0.02	r : 0.02	
^ : 0.22	t : 0.22	u : 0.20	v : 0.09	s : 0.09	y : 0.04	w : 0.04	x : 0.02	z : 0.02	r : 0.02	
^ : 0.22	t : 0.22	u : 0.20	v : 0.09	s : 0.09	y : 0.04	w : 0.04	x : 0.02	z : 0.02	r : 0.02	
^ : 0.22	t : 0.22	u : 0.20	v : 0.09	s : 0.09	y : 0.04	w : 0.04	x : 0.02	z : 0.02	r : 0.02	
^ : 0.22	t : 0.22	u : 0.20	v : 0.09	y : 0.04	w : 0.04	s : 0.04	e : 0.02	g : 0.02	x : 0.02	z : 0.02	r : 0.02	
^ : 0.22	u : 0.20	v : 0.09	t : 0.09	d : 0.06	y : 0.04	w : 0.04	e : 0.04	s : 0.04	b : 0.04	g : 0.02	x : 0.02	z : 0.02	c : 0.02	
e : 0.27	^ : 0.13	c : 0.13	d : 0.11	b : 0.06	y : 0.04	v : 0.04	f : 0.02	a : 0.02	= : 0.02	g : 0.02	h : 0.02	x : 0.02	z : 0.02	w : 0.02	
e : 0.27	d : 0.15	^ : 0.13	c : 0.13	f : 0.06	= : 0.04	] : 0.02	y : 0.02	g : 0.02	h : 0.02	x : 0.02	z : 0.02	4 : 0.02	b : 0.02	
e : 0.27	d : 0.15	c : 0.15	^ : 0.11	f : 0.06	= : 0.04	] : 0.04	y : 0.02	g : 0.02	h : 0.02	x : 0.02	z : 0.02	4 : 0.02	
e : 0.25	^ : 0.11	d : 0.09	f : 0.09	] : 0.09	c : 0.06	3 : 0.04	= : 0.04	4 : 0.04	2 : 0.02	y : 0.02	g : 0.02	h : 0.02	x : 0.02	z : 0.02	b : 0.02	
e : 0.22	f : 0.13	d : 0.11	^ : 0.09	c : 0.09	3 : 0.09	2 : 0.04	= : 0.04	4 : 0.04	g : 0.02	h : 0.02	z : 0.02	b : 0.02	a : 0.02	
] : 0.27	f : 0.13	3 : 0.11	d : 0.06	h : 0.06	e : 0.04	c : 0.04	: : 0.04	= : 0.04	2 : 0.04	b : 0.02	4 : 0.02	z : 0.02	6 : 0.02	^ : 0.02	
c : 0.18	f : 0.15	e : 0.13	d : 0.11	3 : 0.06	: : 0.06	h : 0.06	b : 0.04	= : 0.04	4 : 0.02	2 : 0.02	6 : 0.02	] : 0.02	i : 0.02	

#score	780.2589779251889
#seq	44
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_CDS_m1_run2.txt

#BEAR
::dddd!!dddd[aooooooa]dddd333ddd	chr2:21235080-21235315(-)$1	235	5	37	12.4914
=======[a!!cccnnnnnccc22a]======	chr2:21228371-21228623(-)$1	252	58	90	10.9978
::dddd!!a!!cccooooooccc22a22dddd	chr4:74275026-74275236(+)$1	210	111	143	13.6958
dddd!!ccc[ddddoooooodddd]cccdddd	chr2:216298029-216298271(-)$1	242	160	192	13.7449
ffffff!!dddd[ccclllcccdddd333fff	chr2:216288130-216288349(-)$1	219	6	38	9.9359
::dddd!!a!!cccooooooccc22a22dddd	chr4:74275000-74275226(+)$1	226	137	169	13.6958
""ccc%%%%%%cccooooooccc4444ccc22	chr12:50149315-50149582(+)$1	267	169	201	13.3477
::dddd!!a!!cccooooooccc22a22dddd	chr4:74275071-74275294(+)$1	223	66	98	13.6958
ffffff"""cccrrrrrrrrrccc666666ff	chr2:21236210-21236472(-)$1	262	202	234	9.3953
eee[ccc[ccccccooooooccc]ccc]ccc4	chr3:133486782-133487025(+)$1	243	64	96	13.6884
hhhhhhh[bbddddoooooodddd]bb22hhh	chr3:58108853-58109129(+)$1	276	176	208	11.1565
GGdddd[a[eeeeeooooooeeeeea]ddddc	chr2:216288073-216288306(-)$1	233	46	78	12.7985
eee[ccc$$$$$bboooooobb88888888cc	chr4:74279036-74279257(+)$1	221	160	192	11.9795
:ccc[a####ddddnnnnndddd4444a]ccc	chr2:216286717-216286943(-)$1	226	40	72	13.1271
[bb!!ccc!!ddddoooooodddd22ccc22b	chr2:21259967-21260225(-)$1	258	99	131	14.8399
ffffff####ddddoooooodddd4444ffff	chr3:133482976-133483209(+)$1	233	106	138	16.9804
ffff%%%%%%ddddoooooodddd333fffff	chr2:216230190-216230443(-)$1	253	41	73	13.3232
:ffffff$$$$$bboooooobb333ffffffD	chr2:216242842-216243074(-)$1	232	134	166	10.6572
dd[a"""a[eeeeeooooooeeeee]a22add	chr16:74640521-74640771(-)$1	250	117	149	13.8771
f"""dddd[cccoooooocccdddd333ffff	chr2:21245616-21245846(-)$1	230	154	186	11.4198
dddd!!ccc[ddddoooooodddd]cccdddd	chr2:216298011-216298229(-)$1	218	118	150	13.7449
ggggccc"""eeeeennnnneeeee333ccc3	chr2:21241767-21241979(-)$1	212	86	118	13.0256
ffffff!!ffffffooooooffffff22ffff	chr3:195789624-195789903(-)$1	279	205	237	11.8188
===[bb[a[eeeeeooooooeeeee]a]bb22	chr2:216289730-216289947(-)$1	217	19	51	13.5395
:ccc[a####ddddnnnnndddd4444a]ccc	chr2:216286792-216287029(-)$1	237	126	158	13.1271
ffffff####ddddoooooodddd4444ffff	chr3:133482925-133483176(+)$1	251	157	189	16.9804
ccgggggggccc[aooooooa]ccc:eeeeec	chr2:21235161-21235398(-)$1	237	88	120	11.0474
[cccdddd[eeeeeooooooeeeee333dddd	chr2:21233873-21234156(-)$1	283	191	223	14.5337
eeee[ddddeeeeeooooooeeeee22dddd]	chr4:155506859-155507070(-)$1	211	164	196	12.5788
ddd[ccc"""eeeeennnnneeeee22ccc22	chr2:21236142-21236379(-)$1	237	48	80	11.5384
ffff[bb"""ddddoooooodddd333bb]ff	chr2:216256360-216256613(-)$1	253	172	204	16.3921
ddd[ccc"""a[cccmmmmccc]a333ccc22	chr2:21228190-21228412(-)$1	222	115	147	11.5258
"cccffffffddddoooooodddd88888888	chr3:133467184-133467437(+)$1	253	150	182	12.1124
ff!!ccc!!a[cccooooooccc]a]ccc22f	chr2:21234476-21234694(-)$1	218	173	205	14.8194
b[eeeee"""cccrrrrrrrrrccc333eeee	chr3:133473238-133473448(+)$1	210	6	38	10.8504
b[ccc"""ffffffooooooffffff]ccc]b	chr2:216274305-216274535(-)$1	230	122	154	12.1619
ccc"""ccc[ddddoooooodddd]ccc333c	chr1:116946407-116946642(+)$1	235	84	116	14.8028
ffff[bb"""ddddoooooodddd333bb]ff	chr2:216256254-216256463(-)$1	209	22	54	16.3921
hhhh!!ddddddddoooooodddd00000000	chr3:58106894-58107139(+)$1	245	118	150	11.4528
[bb!!eeeeeddddoooooodddd]eeeee22	chr2:216299326-216299547(-)$1	221	57	89	12.3300
ca[dddd!!eeeeeooooooeeeee666666d	chr12:9229307-9229536(-)$1	229	174	206	12.9212
[eeeee"""eeeeeooooooeeeeeeeeee]b	chr2:21245776-21246010(-)$1	234	113	145	13.1731
ffff[bb"""ddddoooooodddd333bb]ff	chr2:216256263-216256497(-)$1	234	56	88	16.3921
HH:ccc"""eeeeeooooooeeeee333ccc:	chr2:216236875-216237119(-)$1	244	210	242	13.4892
:ggggggg####bboooooobb333ggggggg	chr2:216296455-216296686(-)$1	231	176	208	12.7372
hhhh[ccc[a!!bboooooobb22a]ccc]hh	chr2:216288840-216289095(-)$1	255	133	165	11.8150
eee[ccc$$$$$bboooooobb88888888cc	chr4:74279148-74279389(+)$1	241	48	80	11.9795
::dddd!!a!!cccooooooccc22a22dddd	chr4:74275036-74275243(+)$1	207	101	133	13.6958
:==========[ddddmmmmdddd333=====	chr2:216245679-216245903(-)$1	224	157	189	10.3634
ggggccc"""eeeeennnnneeeee333ccc3	chr2:21241805-21242066(-)$1	261	173	205	13.0256
""dddd####ddddoooooodddd22dddd22	chr1:116941175-116941446(+)$1	271	40	72	15.3802
:==========[ddddmmmmdddd333=====	chr2:216245662-216245879(-)$1	217	133	165	10.3634
===[bb[a[eeeeeooooooeeeee]a]bb22	chr2:216289747-216289960(-)$1	213	32	64	13.5395
=======####cccnnnnnccc4444======	chr4:74281884-74282098(+)$1	214	51	83	12.5828
ff!!ccc!!a[cccooooooccc]a]ccc22f	chr2:21234424-21234647(-)$1	223	126	158	14.8194
:eeeee!!ccc[bboooooobb]ccc333eee	chr2:21235935-21236182(-)$1	247	37	69	12.5250
[ccc"""ddddcccooooooccc7777777dd	chr1:116932734-116932953(+)$1	219	9	41	12.2372

#otherMatches

#Seq PSSM
AGCAUUUGUUUGUCAAAGAAGUCAAGAUUGAU	chr2:21235080-21235315(-)$1	235	5	37	12.4914
UUUGGCUGAUAAAUUCAUUAUUCCUGGGCUGA	chr2:21228371-21228623(-)$1	252	58	90	10.9978
AAGGUAUAAAGCUGCUUUUACAGAAUGUUGCC	chr4:74275026-74275236(+)$1	210	111	143	13.6958
CUCCAUGAUCUGGGACUGUACCUGCAUCGGGG	chr2:216298029-216298271(-)$1	242	160	192	13.7449
GCAGAAACCUGGCUCUCUCAGACCAGUAAUUC	chr2:216288130-216288349(-)$1	219	6	38	9.9359
AAGGUAUAAAGCUGCUUUUACAGAAUGUUGCC	chr4:74275000-74275226(+)$1	226	137	169	13.6958
AUGAAACUGAACAGAAAAGACUGGGACUUCUU	chr12:50149315-50149582(+)$1	267	169	201	13.3477
AAGGUAUAAAGCUGCUUUUACAGAAUGUUGCC	chr4:74275071-74275294(+)$1	223	66	98	13.6958
GGGAUUCCAUCUGCCAUCUCGAGAGUUCCAAG	chr2:21236210-21236472(-)$1	262	202	234	9.3953
UGACUUCCUCUUGUCCUUCUGCACAGAUGAAU	chr3:133486782-133487025(+)$1	243	64	96	13.6884
UUUGAAGAAGUCCACAUACCUGGGUCUCCCUU	chr3:58108853-58109129(+)$1	276	176	208	11.1565
GUUCCUGGCAGUUUUGGUUCAGACUCGAGGAG	chr2:216288073-216288306(-)$1	233	46	78	12.7985
UGCUGUGAAAAACCUCUGUUGGAAAAAUCCCA	chr4:74279036-74279257(+)$1	221	160	192	11.9795
AGCAGCAUGACAUGGGUCACAUGAUGAGGUGC	chr2:216286717-216286943(-)$1	226	40	72	13.1271
AUACCGUGUAUGGAAACUGCUCCACUCACUUU	chr2:21259967-21260225(-)$1	258	99	131	14.8399
UGUGGUCUGGUGCCUGUCUUGGCAGAAAACUA	chr3:133482976-133483209(+)$1	233	106	138	16.9804
UCAGAAUAUACAAAUAACUUUUUGGUCCUGAC	chr2:216230190-216230443(-)$1	253	41	73	13.3232
UUGACAAGCAGACCAGCUCAGGGAGUUGUCAC	chr2:216242842-216243074(-)$1	232	134	166	10.6572
GGAGGAAGAGUCCUGCAGGGAGGACGUGACCC	chr16:74640521-74640771(-)$1	250	117	149	13.8771
CAGCCAAGUCUGCCUAGCCAGUUUGAAAGAGA	chr2:21245616-21245846(-)$1	230	154	186	11.4198
CUCCAUGAUCUGGGACUGUACCUGCAUCGGGG	chr2:216298011-216298229(-)$1	218	118	150	13.7449
AUACCCUGAAGUUUGUAACUCAAGCAGAAGGU	chr2:21241767-21241979(-)$1	212	86	118	13.0256
UGGACACGAGCUUGUGGGCUUAGGCUGUUGUC	chr3:195789624-195789903(-)$1	279	205	237	11.8188
GUCACAGACAGUGGUGUGGUCUACUCUGUGGG	chr2:216289730-216289947(-)$1	217	19	51	13.5395
AGCAGCAUGACAUGGGUCACAUGAUGAGGUGC	chr2:216286792-216287029(-)$1	237	126	158	13.1271
UGUGGUCUGGUGCCUGUCUUGGCAGAAAACUA	chr3:133482925-133483176(+)$1	251	157	189	16.9804
AGCAUUUGUUUGUCAAAGAAGUCAAGAUUGAU	chr2:21235161-21235398(-)$1	237	88	120	11.0474
GCAGCUGUAUAGCAAAUUCCUGUUGAAAGCAG	chr2:21233873-21234156(-)$1	283	191	223	14.5337
GAAUCCAGUUCUCAUCACCCUGGGAUAGCUGA	chr4:155506859-155507070(-)$1	211	164	196	12.5788
CCUCCAGAGAUCUAAAGAUGUUAGAGACUGUU	chr2:21236142-21236379(-)$1	237	48	80	11.5384
UCCUGGUGCGUUACUCACCUGUGAAAAAUGAG	chr2:216256360-216256613(-)$1	253	172	204	16.3921
GUGCCUGAAUCUCAGUUAACUGUGUCCCAGUU	chr2:21228190-21228412(-)$1	222	115	147	11.5258
CCGCGACCAUAUGAAAAGCGUCAUUCCAUCCG	chr3:133467184-133467437(+)$1	253	150	182	12.1124
AUGACAUGAUGGGCUCAUAUGCUGAAAUGAAA	chr2:21234476-21234694(-)$1	218	173	205	14.8194
CUCCGCUCCCCUCCCUCCUCAAGAGUCCGGUG	chr3:133473238-133473448(+)$1	210	6	38	10.8504
UUCUGAAUCUGUGACCGAAAUCACAGCCAGUA	chr2:216274305-216274535(-)$1	230	122	154	12.1619
UACUCUAUUUCCAGACCUACCUGGUGGUUCUG	chr1:116946407-116946642(+)$1	235	84	116	14.8028
UCCUGGUGCGUUACUCACCUGUGAAAAAUGAG	chr2:216256254-216256463(-)$1	209	22	54	16.3921
GGGCAGGAGGCCAGGGGAAGCUGGACGUGACA	chr3:58106894-58107139(+)$1	245	118	150	11.4528
ACCUAGGCAAUGCGUUGGUUUGUACUUGUUAU	chr2:216299326-216299547(-)$1	221	57	89	12.3300
UGUGAAGAAAGGUGAGAGCACACCUGAGAUCC	chr12:9229307-9229536(-)$1	229	174	206	12.9212
GGCAAAACCCUCCGUGUCUGUGGAGUUUGUGA	chr2:21245776-21246010(-)$1	234	113	145	13.1731
UCCUGGUGCGUUACUCACCUGUGAAAAAUGAG	chr2:216256263-216256497(-)$1	234	56	88	16.3921
AUGGUUUUAGGCGGACCACACCGCCCACAACG	chr2:216236875-216237119(-)$1	244	210	242	13.4892
AAUGUGGGGUUGGACCAGAAUCACAUCUACAU	chr2:216296455-216296686(-)$1	231	176	208	12.7372
ACCACAGAAGGGCGACAGGACGGACAUCUUUG	chr2:216288840-216289095(-)$1	255	133	165	11.8150
UGCUGUGAAAAACCUCUGUUGGAAAAAUCCCA	chr4:74279148-74279389(+)$1	241	48	80	11.9795
AAGGUAUAAAGCUGCUUUUACAGAAUGUUGCC	chr4:74275036-74275243(+)$1	207	101	133	13.6958
UUGCUUGGGAAAGCCCACAGGGGCAAGUUUCC	chr2:216245679-216245903(-)$1	224	157	189	10.3634
AUACCCUGAAGUUUGUAACUCAAGCAGAAGGU	chr2:21241805-21242066(-)$1	261	173	205	13.0256
UAACCCGUUUUCCCUUUUCUGGGGUAGGGUGC	chr1:116941175-116941446(+)$1	271	40	72	15.3802
UUGCUUGGGAAAGCCCACAGGGGCAAGUUUCC	chr2:216245662-216245879(-)$1	217	133	165	10.3634
GUCACAGACAGUGGUGUGGUCUACUCUGUGGG	chr2:216289747-216289960(-)$1	213	32	64	13.5395
GGCAUAAUACUAUUAACACAAUUCUUUUAUGU	chr4:74281884-74282098(+)$1	214	51	83	12.5828
AUGACAUGAUGGGCUCAUAUGCUGAAAUGAAA	chr2:21234424-21234647(-)$1	223	126	158	14.8194
ACUGGUCCGCCUCCUACAGUGGUGGCAACACC	chr2:21235935-21236182(-)$1	247	37	69	12.5250
GACAAAUUUCUUCCACAUUAGGAUAUAGCAAG	chr1:116932734-116932953(+)$1	219	9	41	12.2372

#DB
..((((..((((.(......).))))...)))	chr2:21235080-21235315(-)$1	1	5	37	12.4914
(((((((.(..(((.....)))..).))))))	chr2:21228371-21228623(-)$1	1	58	90	10.9978
..((((..(..(((......)))..)..))))	chr4:74275026-74275236(+)$1	1	111	143	13.6958
((((..(((.((((......)))).)))))))	chr2:216298029-216298271(-)$1	1	160	192	13.7449
((((((..((((.(((...)))))))...)))	chr2:216288130-216288349(-)$1	1	6	38	9.9359
..((((..(..(((......)))..)..))))	chr4:74275000-74275226(+)$1	1	137	169	13.6958
..(((......(((......)))....)))..	chr12:50149315-50149582(+)$1	1	169	201	13.3477
..((((..(..(((......)))..)..))))	chr4:74275071-74275294(+)$1	1	66	98	13.6958
((((((...(((.........)))......))	chr2:21236210-21236472(-)$1	1	202	234	9.3953
(((.(((.((((((......))).))).))).	chr3:133486782-133487025(+)$1	1	64	96	13.6884
(((((((.((((((......)))).))..)))	chr3:58108853-58109129(+)$1	1	176	208	11.1565
((((((.(.(((((......)))))).))))(	chr2:216288073-216288306(-)$1	1	46	78	12.7985
(((.(((.....((......))........))	chr4:74279036-74279257(+)$1	1	160	192	11.9795
.(((.(....((((.....))))....).)))	chr2:216286717-216286943(-)$1	1	40	72	13.1271
.((..(((..((((......))))..)))..)	chr2:21259967-21260225(-)$1	1	99	131	14.8399
((((((....((((......))))....))))	chr3:133482976-133483209(+)$1	1	106	138	16.9804
((((......((((......))))...)))))	chr2:216230190-216230443(-)$1	1	41	73	13.3232
.((((((.....((......))...)))))))	chr2:216242842-216243074(-)$1	1	134	166	10.6572
((.(...(.(((((......))))).)..)))	chr16:74640521-74640771(-)$1	1	117	149	13.8771
(...((((.(((......)))))))...))))	chr2:21245616-21245846(-)$1	1	154	186	11.4198
((((..(((.((((......)))).)))))))	chr2:216298011-216298229(-)$1	1	118	150	13.7449
(((((((...(((((.....)))))...))).	chr2:21241767-21241979(-)$1	1	86	118	13.0256
((((((..((((((......))))))..))))	chr3:195789624-195789903(-)$1	1	205	237	11.8188
(((.((.(.(((((......))))).).))..	chr2:216289730-216289947(-)$1	1	19	51	13.5395
.(((.(....((((.....))))....).)))	chr2:216286792-216287029(-)$1	1	126	158	13.1271
((((((....((((......))))....))))	chr3:133482925-133483176(+)$1	1	157	189	16.9804
)))))))))(((.(......).))).((((((	chr2:21235161-21235398(-)$1	1	88	120	11.0474
.(((((((.(((((......)))))...))))	chr2:21233873-21234156(-)$1	1	191	223	14.5337
((((.(((((((((......)))))..)))).	chr4:155506859-155507070(-)$1	1	164	196	12.5788
(((.(((...(((((.....)))))..)))..	chr2:21236142-21236379(-)$1	1	48	80	11.5384
((((.((...((((......))))...)).))	chr2:216256360-216256613(-)$1	1	172	204	16.3921
(((.(((...(.(((....))).)...)))..	chr2:21228190-21228412(-)$1	1	115	147	11.5258
.(((((((((((((......))))........	chr3:133467184-133467437(+)$1	1	150	182	12.1124
((..(((..(.(((......))).).)))..)	chr2:21234476-21234694(-)$1	1	173	205	14.8194
(.(((((...(((.........)))...))))	chr3:133473238-133473448(+)$1	1	6	38	10.8504
(.(((...((((((......)))))).))).)	chr2:216274305-216274535(-)$1	1	122	154	12.1619
(((...(((.((((......)))).)))...)	chr1:116946407-116946642(+)$1	1	84	116	14.8028
((((.((...((((......))))...)).))	chr2:216256254-216256463(-)$1	1	22	54	16.3921
((((..((((((((......))))........	chr3:58106894-58107139(+)$1	1	118	150	11.4528
.((..(((((((((......)))).)))))..	chr2:216299326-216299547(-)$1	1	57	89	12.3300
((.((((..(((((......)))))......)	chr12:9229307-9229536(-)$1	1	174	206	12.9212
.(((((...(((((......)))))))))).)	chr2:21245776-21246010(-)$1	1	113	145	13.1731
((((.((...((((......))))...)).))	chr2:216256263-216256497(-)$1	1	56	88	16.3921
)).(((...(((((......)))))...))).	chr2:216236875-216237119(-)$1	1	210	242	13.4892
.(((((((....((......))...)))))))	chr2:216296455-216296686(-)$1	1	176	208	12.7372
((((.(((.(..((......))..).))).))	chr2:216288840-216289095(-)$1	1	133	165	11.8150
(((.(((.....((......))........))	chr4:74279148-74279389(+)$1	1	48	80	11.9795
..((((..(..(((......)))..)..))))	chr4:74275036-74275243(+)$1	1	101	133	13.6958
.((((((((((.((((....))))...)))))	chr2:216245679-216245903(-)$1	1	157	189	10.3634
(((((((...(((((.....)))))...))).	chr2:21241805-21242066(-)$1	1	173	205	13.0256
..((((....((((......))))..))))..	chr1:116941175-116941446(+)$1	1	40	72	15.3802
.((((((((((.((((....))))...)))))	chr2:216245662-216245879(-)$1	1	133	165	10.3634
(((.((.(.(((((......))))).).))..	chr2:216289747-216289960(-)$1	1	32	64	13.5395
(((((((....(((.....)))....))))))	chr4:74281884-74282098(+)$1	1	51	83	12.5828
((..(((..(.(((......))).).)))..)	chr2:21234424-21234647(-)$1	1	126	158	14.8194
.(((((..(((.((......)).)))...)))	chr2:21235935-21236182(-)$1	1	37	69	12.5250
.(((...(((((((......))).......))	chr1:116932734-116932953(+)$1	1	9	41	12.2372

#PSSM
: : 0.21	f : 0.21	d : 0.08	[ : 0.08	= : 0.07	e : 0.07	" : 0.05	h : 0.05	c : 0.05	g : 0.03	b : 0.03	G : 0.01	H : 0.01	
f : 0.21	c : 0.12	= : 0.10	e : 0.10	: : 0.08	d : 0.08	" : 0.05	h : 0.05	g : 0.05	b : 0.03	[ : 0.03	G : 0.01	a : 0.01	H : 0.01	
d : 0.19	f : 0.17	c : 0.14	e : 0.12	= : 0.10	g : 0.07	h : 0.05	b : 0.03	[ : 0.03	! : 0.03	" : 0.01	: : 0.01	
d : 0.17	f : 0.17	c : 0.14	[ : 0.12	= : 0.07	! : 0.07	g : 0.07	e : 0.07	h : 0.05	" : 0.03	a : 0.01	
c : 0.21	d : 0.17	f : 0.12	[ : 0.12	! : 0.08	= : 0.07	" : 0.05	e : 0.05	b : 0.03	g : 0.03	h : 0.01	% : 0.01	
c : 0.21	d : 0.19	f : 0.12	b : 0.08	= : 0.07	" : 0.07	e : 0.07	! : 0.05	% : 0.03	a : 0.03	g : 0.03	h : 0.01	
c : 0.24	! : 0.14	" : 0.10	# : 0.08	d : 0.08	= : 0.07	[ : 0.05	b : 0.05	% : 0.03	f : 0.03	g : 0.03	e : 0.03	h : 0.01	
" : 0.21	! : 0.19	# : 0.10	c : 0.08	d : 0.08	a : 0.07	[ : 0.05	$ : 0.05	% : 0.03	g : 0.03	= : 0.03	f : 0.01	e : 0.01	
" : 0.19	[ : 0.12	# : 0.12	d : 0.08	a : 0.08	c : 0.08	! : 0.07	$ : 0.05	f : 0.05	% : 0.03	= : 0.03	b : 0.01	g : 0.01	e : 0.01	
e : 0.17	" : 0.14	# : 0.12	! : 0.10	c : 0.08	d : 0.07	[ : 0.05	$ : 0.05	f : 0.05	a : 0.05	% : 0.03	= : 0.03	b : 0.01	
d : 0.35	e : 0.21	! : 0.10	c : 0.10	$ : 0.05	f : 0.03	[ : 0.03	# : 0.03	= : 0.03	% : 0.01	a : 0.01	
d : 0.33	c : 0.26	e : 0.21	[ : 0.07	$ : 0.05	f : 0.03	# : 0.01	! : 0.01	
d : 0.33	c : 0.22	e : 0.21	b : 0.10	[ : 0.05	f : 0.03	r : 0.01	o : 0.01	
d : 0.33	c : 0.22	e : 0.21	b : 0.10	a : 0.03	r : 0.03	f : 0.03	o : 0.01	
o : 0.77	n : 0.07	e : 0.05	c : 0.03	r : 0.03	d : 0.03	
o : 0.77	n : 0.12	r : 0.03	d : 0.03	c : 0.01	m : 0.01	
o : 0.77	n : 0.12	m : 0.05	r : 0.03	l : 0.01	
o : 0.77	n : 0.12	m : 0.05	r : 0.03	l : 0.01	
o : 0.75	n : 0.12	m : 0.05	r : 0.03	l : 0.01	c : 0.01	
o : 0.75	c : 0.08	n : 0.05	r : 0.03	d : 0.03	m : 0.03	
d : 0.33	c : 0.24	e : 0.21	b : 0.10	a : 0.03	r : 0.03	f : 0.03	
d : 0.35	c : 0.24	e : 0.21	b : 0.10	] : 0.03	f : 0.03	r : 0.01	
d : 0.38	c : 0.21	e : 0.21	2 : 0.03	8 : 0.03	3 : 0.03	f : 0.03	] : 0.03	4 : 0.01	
d : 0.35	e : 0.21	2 : 0.10	4 : 0.07	c : 0.07	] : 0.05	8 : 0.03	3 : 0.03	f : 0.03	a : 0.01	7 : 0.01	
e : 0.21	3 : 0.15	2 : 0.10	4 : 0.10	] : 0.08	a : 0.07	c : 0.07	d : 0.05	8 : 0.05	f : 0.03	6 : 0.01	0 : 0.01	7 : 0.01	
3 : 0.22	] : 0.12	4 : 0.10	a : 0.08	c : 0.08	2 : 0.07	8 : 0.05	f : 0.05	d : 0.03	6 : 0.03	e : 0.03	b : 0.01	: : 0.01	0 : 0.01	g : 0.01	7 : 0.01	
3 : 0.28	c : 0.14	2 : 0.12	4 : 0.08	8 : 0.05	a : 0.05	e : 0.05	= : 0.03	6 : 0.03	] : 0.03	b : 0.01	f : 0.01	0 : 0.01	g : 0.01	d : 0.01	7 : 0.01	
c : 0.19	3 : 0.15	2 : 0.12	= : 0.07	] : 0.05	d : 0.05	8 : 0.05	e : 0.05	b : 0.05	6 : 0.03	a : 0.03	4 : 0.03	f : 0.03	0 : 0.01	g : 0.01	7 : 0.01	
c : 0.21	d : 0.17	f : 0.10	b : 0.08	3 : 0.07	= : 0.07	e : 0.07	8 : 0.05	6 : 0.03	2 : 0.03	] : 0.03	0 : 0.01	g : 0.01	7 : 0.01	
d : 0.19	c : 0.17	f : 0.12	e : 0.08	= : 0.07	] : 0.07	8 : 0.05	2 : 0.05	6 : 0.03	b : 0.03	h : 0.01	a : 0.01	3 : 0.01	0 : 0.01	g : 0.01	7 : 0.01	
d : 0.21	f : 0.19	2 : 0.17	c : 0.14	= : 0.07	e : 0.05	h : 0.03	] : 0.03	8 : 0.01	3 : 0.01	0 : 0.01	6 : 0.01	g : 0.01	
f : 0.21	d : 0.19	2 : 0.12	c : 0.12	= : 0.07	b : 0.05	h : 0.03	3 : 0.03	e : 0.03	4 : 0.01	D : 0.01	] : 0.01	8 : 0.01	0 : 0.01	: : 0.01	g : 0.01	

#score	740.6646143907088
#seq	57
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_transcript_m1_run1.txt

#BEAR
iiiiiii[bb[dddd[cccnnnnncccdddd]bb]iiiii	chr1:16957873-16958126(-)$1	253	161	201	12.9012
dddd==========ccccccmmmmccc]ccc333======	chr16:88723676-88723910(-)$1	234	67	107	16.0743
eeee[a[dddd!!gggggggmmmmggggggg333ddddae	chr7:99627945-99628205(+)$1	260	59	99	13.5474
ggggggg!!ccc!!ddddoooooodddd]ccc]ggggggg	chr17:70117866-70118131(+)$1	265	144	184	14.3183
:a[ccc[ccc[a[ffffffooooooffffff]a]cccccc	chr7:142962095-142962413(+)$1	318	28	68	13.3845
"""a[ccc!!dddd!!a[bbmmmmbbaddddccc]a]eee	chr16:88724086-88724328(-)$1	242	53	93	12.9125
d!!ggggggg"""dddd[bbmmmmbbddddggggggg]dd	chr14:21544726-21544969(+)$1	243	149	189	13.5395
ccc[ccc!!ccc[gggggggmmmmggggggg]ccc]ccc]	chr7:75610856-75611110(+)$1	254	186	226	14.6886
fff[bb####==========mmmm==========bbffff	chr9:140347364-140347588(-)$1	224	161	201	13.8012
iiii[iiiiiiiii!!ddddmmmmdddd4444iiiiiiii	chr20:33594072-33594305(-)$1	233	155	195	14.1887
e####eeeee==========rrrrrrrrr==========2	chr6:30584790-30585095(-)$1	305	90	130	12.8019
eeee[eeeee[bb[ccccccmmmmccc]cccbb]eeeeee	chr13:50571174-50571467(+)$1	293	28	68	13.6158
e"""gggggggdddd!!cccmmmmccc]dddd22gggggg	chr3:48456818-48457050(-)$1	232	30	70	14.6607
gg[a[ggggggg[ccc[cccmmmmcccccc]ggggggg]a	chr17:60556496-60556861(+)$1	365	17	57	15.9803
gggggggccc[dddd[cccooooooccc]dddd]ccc22g	chr17:37901141-37901411(+)$1	270	78	118	14.7746
a[ggggggg!!cccccccccnnnnnccc]ccc22ccc22g	chr2:219266335-219266545(+)$1	210	103	143	14.9362
ee[ggggggg$$$$$eeeeemmmmeeeeeggggggg]eee	chr16:24741080-24741336(+)$1	256	15	55	12.4829
cc!!ffffff[a!!ccc[aooooooa]ccc22a]ffffff	chr17:7011759-7012033(-)$1	274	227	267	14.6941
ea[eeeee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14217-14422(-)$1	205	46	86	13.4054
ccceeeee!!a!!gggggggmmmmggggggg]a22eeeee	chr20:34205450-34205692(+)$1	242	23	63	14.6470
ea[eeeee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14222-14435(-)$1	213	59	99	13.4054
ggggggg####ffffff[bblllbb]ffffff333ggggg	chr14:24568831-24569086(+)$1	255	163	203	12.5120
ccc!!gggggggccc[cccnnnnnccc]ccc]ggggggg2	chr5:179248104-179248383(+)$1	279	204	244	15.3187
#eeeee[bb[ccc"""cccnnnnnccc333ccc]bb]eee	chr12:46766145-46766378(-)$1	233	6	46	13.3183
eeeee!!===========oooooo===========333ee	chr2:149639199-149639533(-)$1	334	214	254	16.1703
ccc!!iiiiiiiii####bbnnnnnbb333iiiiiiiii5	chr17:80037806-80038051(-)$1	245	32	72	13.5719
"""eeeee!!ccc!!fffffflllffffff22ccc333ee	chr3:48667141-48667395(-)$1	254	49	89	12.6002
c!!hhhhhhhh"""ccc[bbmmmmbb]ccc]hhhhhhhh2	chr5:93903966-93904220(-)$1	254	42	82	12.5084
eeeee[gggggggbb[cccooooooccc]bb]ggggggg2	chr19:893455-893690(+)$1	235	178	218	14.9306
[dddd[ccc"""ccc[eeeeellleeeee]ccc]ccc22d	chr11:724784-725061(+)$1	277	12	52	11.8521
!a[gggggggbbdddd[cccmmmmcccdddd]bb]ggggg	chr19:49458123-49458427(+)$1	304	108	148	13.6415
dddd[ggggggg!!ffffffnnnnnffffff]ggggggg]	chr17:4686007-4686270(+)$1	263	165	205	13.1388
ff!!a!!ccc####a[ddddnnnnndddd]a333ccc22a	chr5:134260114-134260402(+)$1	288	155	195	13.7096
ggggggg!!ccc[bb[cccnnnnnccc]bb]ccc22gggg	chr20:2819679-2819907(-)$1	228	110	150	13.5417
++a[eeeee[agggggggooooooggggggg]a]eeeee]	chr17:77078044-77078299(+)$1	255	98	138	13.4819
ddd[bbbb[ggggggg[ccclllcccggggggg333bb>>	chr16:67984709-67984966(-)$1	257	142	182	12.1918
gg####eeeee!!gggggggooooooggggggg]eeeeeg	chr2:27356900-27357230(-)$1	330	93	133	14.7306
ffccc####===========oooooo===========444	chr9:139726256-139726554(+)$1	298	162	202	15.7413
ccc!!ccc!!ggggggg[bbmmmmbb]ggggggg22ccc2	chr16:67983707-67984038(-)$1	331	103	143	13.9462
ea[eeeee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14235-14449(-)$1	214	73	113	13.4054
$$dddddddd[ccc[a!!aooooooa22a]ccc]dddd22	chr16:50664604-50664846(+)$1	242	175	215	12.3748
c[eeeee!!ccc[ccc[cccooooooccc]cccccceeee	chr22:37904335-37904599(-)$1	264	40	80	15.1925
hhhhh[a[ccc"""cccooooooccc22ccc]a]hhhhhh	chr16:50582551-50582813(+)$1	262	38	78	12.4455
=====!!bb[bb[ccc[cccmmmmccc]cccbb]bb333=	chr7:100282732-100283073(-)$1	341	22	62	14.2370
cc!!a[a[============lll============22a]a	chr7:5569719-5569971(-)$1	252	25	65	15.9596
dddd!!ggggggg[ddddbbmmmmbb]dddd]ggggggg]	chr16:88722283-88722555(-)$1	272	15	55	13.0887
ggggggg[bb[a[dddd[bbnnnnnbbdddd]a]bb]ggg	chr7:142962001-142962239(+)$1	238	126	166	12.5508
f[eeeee####eeeee[cccmmmmccceeeeeeeeee]ff	chr17:74381954-74382203(+)$1	249	112	152	12.2623
h####ccc============mmmm============]ccc	chr5:134263532-134263774(+)$1	242	193	233	15.8644
a[ggggggg!!cccccccccnnnnnccc]ccc22ccc22g	chr2:219266345-219266576(+)$1	231	93	133	14.9362
ccc"""ccc"""bb!!cccooooooccc]bb]ccc333cc	chr14:35872778-35872996(-)$1	218	67	107	14.9148
b!!ccc!!eeeeegggggggmmmmggggggg333eeeee3	chr12:123994712-123994983(-)$1	271	135	175	14.0373
ccc[eeeee!!a####cccooooooccc333a22eeeeec	chr7:150774541-150774786(-)$1	245	138	178	15.6308
e!!ccc[eeeee####cccooooooccceeeee333ccc2	chr14:54418396-54418665(-)$1	269	151	191	14.7874
gg[ggggggg[a[gggggggmmmmggggggg]a]gggggg	chr20:60894109-60894349(-)$1	240	165	205	16.1752

#otherMatches

#Seq PSSM
CUCGCCUUUCGGUGGCUUCGGAUUGAACUGCAGAUGGGUG	chr1:16957873-16958126(-)$1	253	161	201	12.9012
GUGGGUGCCCACAGAGACCCGCAGGGGUUCUGGGCUGUGG	chr16:88723676-88723910(-)$1	234	67	107	16.0743
CGGAUGCAGGCUUACUGUCUGAUAAGAUGGUUUUGUCUCU	chr7:99627945-99628205(+)$1	260	59	99	13.5474
GGGGGCGCUGGUCAGGGCUGAUUUGCCCCGCCCCGCCUCC	chr17:70117866-70118131(+)$1	265	144	184	14.3183
UGGAGCAUCCAGAGAUGCUGGAGAAAGCGUCCCGGGAGCU	chr7:142962095-142962413(+)$1	318	28	68	13.3845
UCCGAGCAUCCAGAAAGUGCUUCUGCCUCUGUGCCCCUCC	chr16:88724086-88724328(-)$1	242	53	93	12.9125
GCUGGUUUCUGAGUCCUUGGGUGCCCAGGAAGAAACCCCC	chr14:21544726-21544969(+)$1	243	149	189	13.5395
GGUCGAGGAGGGACCUUGGUCCCAGCCAAGGACUCACUCU	chr7:75610856-75611110(+)$1	254	186	226	14.6886
GACCACGCAGCCUUCUCCAGCUGCCUGGGGGAGGGUGUCU	chr9:140347364-140347588(-)$1	224	161	201	13.8012
UUUACGUUAGAGACGACGGGGGAGUCUGGGCAGUCuuugg	chr20:33594072-33594305(-)$1	233	155	195	14.1887
UAGAGGUAAGUUUGCCUACUUUGUCGUCUAGUGGGUAAAA	chr6:30584790-30585095(-)$1	305	90	130	12.8019
CGCGUACCGUGCGGUCCCUGUAGUUGGAGGACGGGCGGUC	chr13:50571174-50571467(+)$1	293	28	68	13.6158
UCUGCUGGCCCCACCAAGAGCUUCCUCAGGUGUUGGGCCA	chr3:48456818-48457050(-)$1	232	30	70	14.6607
ggcggggggUUGCGGCGCUCAGGAGAGGCCCCGGCUCCGC	chr17:60556496-60556861(+)$1	365	17	57	15.9803
GCCUUCCGCCUCUUCAAGGUGAGACCCUGGGAGUGGCAUG	chr17:37901141-37901411(+)$1	270	78	118	14.7746
CGUGGGGGCCAGGUGGGGCCACGGGGGCACCUGGACUCAG	chr2:219266335-219266545(+)$1	210	103	143	14.9362
GCUGCGGAGGGCUUGAGGCUCGCGAGCCUCCUUCGCCGCG	chr16:24741080-24741336(+)$1	256	15	55	12.4829
GGAGGUCCAGGCAAUCAGCACCCACGGUGAGGGGCUGGAC	chr17:7011759-7012033(-)$1	274	227	267	14.6941
UAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14217-14422(-)$1	205	46	86	13.4054
UCCCUGGCAGGAGACGUGCUGGUCAGCAUGUACAGGUCAG	chr20:34205450-34205692(+)$1	242	23	63	14.6470
UAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14222-14435(-)$1	213	59	99	13.4054
GUGUUCACAAUGACUUUGUCAGUGAGAAAGUUUCCUGAAC	chr14:24568831-24569086(+)$1	255	163	203	12.5120
GGGAGCCGGCCUGGUGACUGGAGUGGUGACCAAGGCCGGG	chr5:179248104-179248383(+)$1	279	204	244	15.3187
UUUUUUGUUUGUUUUUUAUGAUUUGUAUUUGACUGAGAGA	chr12:46766145-46766378(-)$1	233	6	46	13.3183
AGUUCACCCUCUAAAUCACCACGAUGAUUUAGAGGUAAGG	chr2:149639199-149639533(-)$1	334	214	254	16.1703
CAGGGUGGGUCCUGGACACCCCUGAGGCCGCAGGACCCAG	chr17:80037806-80038051(-)$1	245	32	72	13.5719
GGUCAUCUUCUCCCUGCUGCUCGUGGUGGUCCGGACACAG	chr3:48667141-48667395(-)$1	254	49	89	12.6002
GGGUUGUUUUCGUUGAUGUUGGUUAGGGUUGGGAAACGAG	chr5:93903966-93904220(-)$1	254	42	82	12.5084
guugcccaggcuggaaugcaauggcgcgaucuuagcuugu	chr19:893455-893690(+)$1	235	178	218	14.9306
GAGCUAUCGGUGCUCAAGGAUGAGGUCCUAGAGGUGAGGG	chr11:724784-725061(+)$1	277	12	52	11.8521
gcagacgggcgggaggagggcgagCCCCCUCGCCGGCCCG	chr19:49458123-49458427(+)$1	304	108	148	13.6415
UCUAUGGGAUCGGUGCGAGGCGCCCCCUCGCGUGGUCCCC	chr17:4686007-4686270(+)$1	263	165	205	13.1388
UAGUAGUUACUGGUUGAACAUUGUUUGUUGGUGUGUAUAU	chr5:134260114-134260402(+)$1	288	155	195	13.7096
CAGACCCUGGCCUGGCAGGGUUCUCCUCCCUGGCAUGGGU	chr20:2819679-2819907(-)$1	228	110	150	13.5417
AAGGUGGGUGGUGGCUUUCGUCCAAGGGCCAGCGGCCCAG	chr17:77078044-77078299(+)$1	255	98	138	13.4819
GGAAGCGCUUGGCCUGUGUACGUUGCCAGGUCACAUGCAC	chr16:67984709-67984966(-)$1	257	142	182	12.1918
CUGGGGCUGGGUCUUGCUGCGGGCUGGCGGCGAUUCCAGG	chr2:27356900-27357230(-)$1	330	93	133	14.7306
CCGGCGGAUGUGGGUCUCGCCGCUGAGUGGGGCUCACUGA	chr9:139726256-139726554(+)$1	298	162	202	15.7413
GGCGGCCUGAGCCCCCAAGGCGGGCCCUGGGGGUGAGGGA	chr16:67983707-67984038(-)$1	331	103	143	13.9462
UAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14235-14449(-)$1	214	73	113	13.4054
GGACCUGCGGAGCUGGGAGAAGAAGCAGCGAGCCCCGCUC	chr16:50664604-50664846(+)$1	242	175	215	12.3748
AGUGGGCCGAGGAGCUGCGCGACCAGGUGGGGCCCUGCCC	chr22:37904335-37904599(-)$1	264	40	80	15.1925
gcugccgccgccgccgccgccUCGCGAUGUGCCUGCAGCC	chr16:50582551-50582813(+)$1	262	38	78	12.4455
UCCCCACUGCCCACCCUGGGCCCACUCUGGGGGACAAACG	chr7:100282732-100283073(-)$1	341	22	62	14.2370
GGGAGGCGCGCUCCGGGGGUGCCGCUCUCGGGGCGGGGGC	chr7:5569719-5569971(-)$1	252	25	65	15.9596
GCCUGAACUCCGCGUGCUCAUCCUUGUGGUGAGUGGGGUG	chr16:88722283-88722555(-)$1	272	15	55	13.0887
GCAUCCAGAGAUGCUGGAGAAAGCGUCCCGGGAGCUGUGG	chr7:142962001-142962239(+)$1	238	126	166	12.5508
GGGCGGCCCCCGGGGCGUGCUCCCGCGGCCCUGCCGCGUG	chr17:74381954-74382203(+)$1	249	112	152	12.2623
UUGGAGUAGGCUUAGGUUAUGUACGUAGUCUAGGCCAUAC	chr5:134263532-134263774(+)$1	242	193	233	15.8644
CGUGGGGGCCAGGUGGGGCCACGGGGGCACCUGGACUCAG	chr2:219266345-219266576(+)$1	231	93	133	14.9362
GGCCUUCCUCAACUUCCAGAACAACCUGCAGCAGGUGCGC	chr14:35872778-35872996(-)$1	218	67	107	14.9148
CAGCUAAACCCAGCACUGCUCUGCAGCAGUGUCCCUGGGG	chr12:123994712-123994983(-)$1	271	135	175	14.0373
GCCAGAGGGACCAUGAAGCGCCAAAGCUAAGGAGCUCUCG	chr7:150774541-150774786(-)$1	245	138	178	15.6308
CAGUGAAAGCCCUGGGGAAGAAGAGUUCGGGUUACAUCAA	chr14:54418396-54418665(-)$1	269	151	191	14.7874
UCCGGGCCCCUGGCCUGCCAAGGAUGGCAGGGCUGGGGUC	chr20:60894109-60894349(-)$1	240	165	205	16.1752

#DB
(((((((.((.((((.(((.....))))))).)).)))))	chr1:16957873-16958126(-)$1	1	161	201	12.9012
))))((((((((((((((((....))).)))...))))))	chr16:88723676-88723910(-)$1	1	67	107	16.0743
((((.(.((((..(((((((....)))))))...))))))	chr7:99627945-99628205(+)$1	1	59	99	13.5474
(((((((..(((..((((......)))).))).)))))))	chr17:70117866-70118131(+)$1	1	144	184	14.3183
.(.(((.(((.(.((((((......)))))).).))))))	chr7:142962095-142962413(+)$1	1	28	68	13.3845
...(.(((..((((..(.((....)))))))))).).)))	chr16:88724086-88724328(-)$1	1	53	93	12.9125
(..(((((((...((((.((....))))))))))))).))	chr14:21544726-21544969(+)$1	1	149	189	13.5395
(((.(((..(((.(((((((....))))))).))).))).	chr7:75610856-75611110(+)$1	1	186	226	14.6886
(((.((....((((((((((....))))))))))))))))	chr9:140347364-140347588(-)$1	1	161	201	13.8012
((((.(((((((((..((((....))))....))))))))	chr20:33594072-33594305(-)$1	1	155	195	14.1887
(....(((((((((((((((.........)))))))))).	chr6:30584790-30585095(-)$1	1	90	130	12.8019
((((.(((((.((.((((((....))).))))).))))))	chr13:50571174-50571467(+)$1	1	28	68	13.6158
(...(((((((((((..(((....))).))))..))))))	chr3:48456818-48457050(-)$1	1	30	70	14.6607
((.(.(((((((.(((.(((....)))))).))))))).)	chr17:60556496-60556861(+)$1	1	17	57	15.9803
((((((((((.((((.(((......))).)))).)))..)	chr17:37901141-37901411(+)$1	1	78	118	14.7746
(.(((((((..(((((((((.....))).)))..)))..)	chr2:219266335-219266545(+)$1	1	103	143	14.9362
((.(((((((.....(((((....)))))))))))).)))	chr16:24741080-24741336(+)$1	1	15	55	12.4829
((..((((((.(..(((.(......).)))..).))))))	chr17:7011759-7012033(-)$1	1	227	267	14.6941
((.(((((.((((.((.(((......)))..)).)))).)	chrM:14217-14422(-)$1	1	46	86	13.4054
((((((((..(..(((((((....))))))).)..)))))	chr20:34205450-34205692(+)$1	1	23	63	14.6470
((.(((((.((((.((.(((......)))..)).)))).)	chrM:14222-14435(-)$1	1	59	99	13.4054
(((((((....((((((.((...)).))))))...)))))	chr14:24568831-24569086(+)$1	1	163	203	12.5120
(((..((((((((((.(((.....))).))).))))))).	chr5:179248104-179248383(+)$1	1	204	244	15.3187
.(((((.((.(((...(((.....)))...))).)).)))	chr12:46766145-46766378(-)$1	1	6	46	13.3183
(((((..(((((((((((......)))))))))))...))	chr2:149639199-149639533(-)$1	1	214	254	16.1703
(((..(((((((((....((.....))...))))))))).	chr17:80037806-80038051(-)$1	1	32	72	13.5719
...(((((..(((..((((((...))))))..)))...))	chr3:48667141-48667395(-)$1	1	49	89	12.6002
(..((((((((...(((.((....)).))).)))))))).	chr5:93903966-93904220(-)$1	1	42	82	12.5084
(((((.(((((((((.(((......))).)).))))))).	chr19:893455-893690(+)$1	1	178	218	14.9306
.((((.(((...(((.(((((...))))).))).)))..)	chr11:724784-725061(+)$1	1	12	52	11.8521
.(.(((((((((((((.(((....))))))).)).)))))	chr19:49458123-49458427(+)$1	1	108	148	13.6415
((((.(((((((..((((((.....)))))).))))))).	chr17:4686007-4686270(+)$1	1	165	205	13.1388
((..(..(((....(.((((.....)))).)...)))..)	chr5:134260114-134260402(+)$1	1	155	195	13.7096
(((((((..(((.((.(((.....))).)).)))..))))	chr20:2819679-2819907(-)$1	1	110	150	13.5417
..(.(((((.((((((((......))))))).).))))).	chr17:77078044-77078299(+)$1	1	98	138	13.4819
(((.((((.(((((((.(((...))))))))))...))..	chr16:67984709-67984966(-)$1	1	142	182	12.1918
((....(((((..(((((((......))))))).))))))	chr2:27356900-27357230(-)$1	1	93	133	14.7306
(((((....(((((((((((......)))))))))))...	chr9:139726256-139726554(+)$1	1	162	202	15.7413
(((..(((..(((((((.((....)).)))))))..))).	chr16:67983707-67984038(-)$1	1	103	143	13.9462
((.(((((.((((.((.(((......)))..)).)))).)	chrM:14235-14449(-)$1	1	73	113	13.4054
..((((((((.(((.(..(......)..).))).))))..	chr16:50664604-50664846(+)$1	1	175	215	12.3748
(.(((((..(((.(((.(((......))).))))))))))	chr22:37904335-37904599(-)$1	1	40	80	15.1925
(((((.(.(((...(((......)))..))).).))))))	chr16:50582551-50582813(+)$1	1	38	78	12.4455
(((((..((.((.(((.(((....))).))))).))...)	chr7:100282732-100283073(-)$1	1	22	62	14.2370
((..(.(.((((((((((((...))))))))))))..).)	chr7:5569719-5569971(-)$1	1	25	65	15.9596
((((..(((((((.((((((....)).)))).))))))).	chr16:88722283-88722555(-)$1	1	15	55	13.0887
(((((((.((.(.((((.((.....)))))).).)).)))	chr7:142962001-142962239(+)$1	1	126	166	12.5508
(.(((((....(((((.(((....))))))))))))).))	chr17:74381954-74382203(+)$1	1	112	152	12.2623
(....(((((((((((((((....)))))))))))).)))	chr5:134263532-134263774(+)$1	1	193	233	15.8644
(.(((((((..(((((((((.....))).)))..)))..)	chr2:219266345-219266576(+)$1	1	93	133	14.9362
(((...(((...((..(((......))).)).)))...))	chr14:35872778-35872996(-)$1	1	67	107	14.9148
(..(((..((((((((((((....)))))))...))))).	chr12:123994712-123994983(-)$1	1	135	175	14.0373
(((.(((((..(....(((......)))...)..))))))	chr7:150774541-150774786(-)$1	1	138	178	15.6308
(..(((.(((((....(((......))))))))...))).	chr14:54418396-54418665(-)$1	1	151	191	14.7874
((.(((((((.(.(((((((....))))))).).))))))	chr20:60894109-60894349(-)$1	1	165	205	16.1752

#PSSM
e : 0.20	c : 0.20	g : 0.14	d : 0.09	f : 0.07	i : 0.03	" : 0.03	a : 0.03	h : 0.03	: : 0.01	# : 0.01	[ : 0.01	! : 0.01	+ : 0.01	$ : 0.01	= : 0.01	b : 0.01	
c : 0.16	g : 0.14	e : 0.10	d : 0.09	a : 0.09	! : 0.07	[ : 0.07	" : 0.05	f : 0.05	i : 0.03	# : 0.03	+ : 0.01	$ : 0.01	h : 0.01	= : 0.01	
[ : 0.14	c : 0.14	e : 0.12	g : 0.12	! : 0.12	d : 0.10	" : 0.05	# : 0.05	i : 0.03	f : 0.01	a : 0.01	h : 0.01	= : 0.01	
e : 0.21	g : 0.20	! : 0.10	d : 0.09	[ : 0.09	c : 0.07	# : 0.05	i : 0.03	a : 0.03	" : 0.03	h : 0.03	= : 0.01	
g : 0.21	e : 0.21	[ : 0.10	c : 0.09	! : 0.07	# : 0.05	= : 0.03	b : 0.03	h : 0.03	d : 0.03	a : 0.03	i : 0.01	f : 0.01	" : 0.01	
g : 0.27	e : 0.21	c : 0.12	! : 0.07	[ : 0.07	i : 0.05	b : 0.03	# : 0.03	= : 0.01	a : 0.01	f : 0.01	h : 0.01	d : 0.01	" : 0.01	
g : 0.30	e : 0.21	c : 0.10	[ : 0.07	! : 0.07	i : 0.05	# : 0.03	a : 0.03	= : 0.01	f : 0.01	h : 0.01	b : 0.01	d : 0.01	
g : 0.21	e : 0.20	c : 0.14	! : 0.09	[ : 0.07	# : 0.07	b : 0.05	= : 0.03	d : 0.03	i : 0.03	f : 0.01	h : 0.01	
g : 0.21	! : 0.14	e : 0.12	c : 0.10	b : 0.07	= : 0.07	# : 0.07	[ : 0.07	d : 0.03	i : 0.03	f : 0.01	h : 0.01	
g : 0.20	c : 0.14	! : 0.12	= : 0.09	d : 0.09	e : 0.09	# : 0.05	[ : 0.05	b : 0.03	i : 0.03	" : 0.03	f : 0.01	h : 0.01	
[ : 0.14	g : 0.14	= : 0.12	c : 0.12	d : 0.09	" : 0.05	! : 0.05	# : 0.05	e : 0.05	i : 0.03	a : 0.03	b : 0.03	$ : 0.01	h : 0.01	
c : 0.16	g : 0.14	d : 0.12	= : 0.12	a : 0.09	" : 0.09	! : 0.05	b : 0.05	e : 0.05	i : 0.03	$ : 0.01	f : 0.01	# : 0.01	
d : 0.14	[ : 0.14	= : 0.12	c : 0.12	! : 0.10	g : 0.09	" : 0.05	# : 0.05	i : 0.03	b : 0.03	e : 0.03	$ : 0.01	f : 0.01	
g : 0.16	c : 0.14	d : 0.12	= : 0.12	[ : 0.09	! : 0.07	" : 0.05	b : 0.05	# : 0.05	f : 0.03	i : 0.03	$ : 0.01	e : 0.01	
c : 0.21	g : 0.16	d : 0.14	= : 0.10	b : 0.09	! : 0.07	f : 0.05	# : 0.05	$ : 0.01	" : 0.01	a : 0.01	[ : 0.01	e : 0.01	
c : 0.18	g : 0.16	[ : 0.12	= : 0.10	d : 0.09	f : 0.07	! : 0.07	b : 0.05	# : 0.05	e : 0.03	" : 0.01	a : 0.01	
c : 0.29	[ : 0.16	g : 0.14	d : 0.10	= : 0.10	f : 0.07	! : 0.03	e : 0.03	a : 0.01	# : 0.01	
c : 0.41	g : 0.12	[ : 0.12	= : 0.10	d : 0.07	f : 0.05	e : 0.03	# : 0.01	! : 0.01	o : 0.01	
c : 0.41	b : 0.14	g : 0.10	= : 0.09	o : 0.07	f : 0.05	d : 0.03	e : 0.03	a : 0.03	
c : 0.25	o : 0.21	b : 0.14	g : 0.10	= : 0.09	n : 0.07	d : 0.03	e : 0.03	f : 0.03	
m : 0.38	o : 0.32	n : 0.18	l : 0.05	r : 0.01	f : 0.01	e : 0.01	
m : 0.38	o : 0.32	n : 0.18	l : 0.09	r : 0.01	
m : 0.38	o : 0.32	n : 0.18	l : 0.09	r : 0.01	
m : 0.38	o : 0.30	n : 0.18	l : 0.03	c : 0.03	r : 0.01	b : 0.01	= : 0.01	
o : 0.25	c : 0.23	g : 0.10	b : 0.10	n : 0.10	= : 0.07	d : 0.03	e : 0.03	r : 0.01	f : 0.01	
c : 0.36	b : 0.12	g : 0.10	o : 0.10	= : 0.07	d : 0.05	f : 0.05	e : 0.03	a : 0.03	r : 0.01	] : 0.01	
c : 0.40	g : 0.14	= : 0.09	d : 0.07	f : 0.07	] : 0.07	e : 0.03	b : 0.03	2 : 0.03	a : 0.01	r : 0.01	
c : 0.25	d : 0.16	g : 0.16	] : 0.10	= : 0.09	f : 0.07	e : 0.05	3 : 0.03	2 : 0.03	r : 0.01	
c : 0.21	g : 0.16	d : 0.14	] : 0.10	= : 0.09	f : 0.07	e : 0.07	3 : 0.05	4 : 0.01	r : 0.01	b : 0.01	a : 0.01	
c : 0.20	g : 0.18	d : 0.14	= : 0.10	f : 0.07	] : 0.07	2 : 0.05	3 : 0.05	b : 0.05	e : 0.03	4 : 0.01	
c : 0.21	g : 0.20	d : 0.12	= : 0.10	2 : 0.09	f : 0.05	] : 0.05	b : 0.03	e : 0.03	4 : 0.01	i : 0.01	a : 0.01	3 : 0.01	
] : 0.25	c : 0.16	g : 0.10	= : 0.10	b : 0.09	3 : 0.07	d : 0.03	2 : 0.03	e : 0.03	4 : 0.01	f : 0.01	i : 0.01	h : 0.01	a : 0.01	
g : 0.18	c : 0.16	b : 0.12	a : 0.12	= : 0.10	3 : 0.09	2 : 0.07	i : 0.03	e : 0.03	] : 0.01	d : 0.01	h : 0.01	
] : 0.29	g : 0.16	3 : 0.12	c : 0.10	= : 0.10	2 : 0.09	b : 0.03	i : 0.03	h : 0.01	e : 0.01	
g : 0.18	c : 0.18	= : 0.10	e : 0.10	d : 0.09	b : 0.07	] : 0.05	2 : 0.05	3 : 0.05	i : 0.03	h : 0.03	f : 0.01	
g : 0.21	c : 0.12	e : 0.12	d : 0.09	3 : 0.09	= : 0.07	b : 0.07	i : 0.05	2 : 0.05	h : 0.03	a : 0.01	] : 0.01	f : 0.01	
g : 0.21	c : 0.16	e : 0.14	d : 0.09	] : 0.09	3 : 0.07	i : 0.05	= : 0.05	f : 0.03	h : 0.03	b : 0.01	2 : 0.01	
g : 0.21	e : 0.18	d : 0.09	c : 0.09	2 : 0.09	3 : 0.07	i : 0.05	= : 0.03	] : 0.03	f : 0.03	h : 0.03	b : 0.01	4 : 0.01	a : 0.01	
e : 0.21	g : 0.20	c : 0.10	2 : 0.10	] : 0.09	i : 0.05	f : 0.05	= : 0.03	h : 0.03	a : 0.01	d : 0.01	> : 0.01	4 : 0.01	3 : 0.01	
e : 0.21	g : 0.20	2 : 0.12	c : 0.07	] : 0.07	f : 0.05	a : 0.05	i : 0.03	= : 0.03	d : 0.03	5 : 0.01	> : 0.01	4 : 0.01	h : 0.01	3 : 0.01	

#score	769.5322952830911
#seq	55
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_transcript_m1_run1.txt

#BEAR
ggggggg####ddddoooooodddd]ggggggg]cc	chr4:1229845-1230094(-)$1	249	148	184	16.0705
qccc:eeeee!!cccooooooccc22eeeeefffff	chr19:510768-511024(+)$1	256	35	71	13.3799
hhhhhhhh[a[ddddoooooodddd]a]hhhhhhhh	chr1:1281655-1281940(-)$1	285	61	97	13.1133
dd####ccc"""cccooooooccc333cccdddd]a	chr17:20798765-20799049(+)$1	284	122	158	17.9267
=========ffffffooooooffffff4444=====	chr19:5048937-5049267(+)$1	330	55	91	14.1538
=========!!ccc!!aooooooa22ccc]======	chr2:97495940-97496181(-)$1	241	3	39	15.3997
gggggggdddd[bboooooobbdddd4444gggggg	chr16:85658110-85658341(+)$1	231	155	191	13.2611
dd[bb[a[bb[ddddoooooodddd22bb]a22bb2	chr7:30597826-30598104(-)$1	278	16	52	13.5109
dddd[ccc####ddddmmmmdddd4444ccc]dddd	chr9:138358632-138358940(-)$1	308	29	65	12.8193
gggggg!!dddd[cccnnnnnccc]dddd333gggg	chr5:292699-293059(+)$1	360	142	178	13.0725
eee[ggggggg!!bboooooobbggggggg]eeeee	chr8:607871-608133(-)$1	262	210	246	14.0015
ee!!a[ccc!!a[bboooooobb]a22ccc]a22ee	chr4:1828585-1828854(-)$1	269	155	191	15.6392
ccc[a!!ccc[bb[aooooooa]bb]ccc22a333c	chr16:89183777-89184027(+)$1	250	134	170	15.1295
=====[dddd"""ddddllldddd333dddd]====	chr8:610642-610892(-)$1	250	157	193	14.1223
[dddd[ccc"""cccooooooccc333ccc]dddd]	chr19:19211846-19212115(+)$1	269	164	200	18.1517
bb[ccc[ccc"""bboooooobb333ccc]ccc]bb	chr17:46695528-46695806(-)$1	278	98	134	15.6944
cc[a[dddd####cccnnnnnccc]dddd]a]ccc]	chr19:2425608-2425862(-)$1	254	146	182	14.0320
!cccdddd[ffffffooooooffffffdddd]ccc]	chr17:1465453-1465718(-)$1	265	123	159	12.9434
!!bb"""dddd[cccooooooccc22dddd]bb22g	chr15:29235644-29235867(+)$1	223	19	55	14.9359
cca[ccc!!cccaooooooa]ccc22ccc333a]cc	chr22:50013912-50014185(-)$1	273	1	37	14.6004
ddd"""ccc[a"""cccmmmmccc22a]ccc]dddd	chr15:29241039-29241296(+)$1	257	86	122	12.8929
cccbb[dddd[acccooooooccc]a]dddd]bbDD	chr11:62289982-62290225(-)$1	243	98	134	13.5016
c[ggggggg####ddddllldddd333ggggggg33	chr17:80096748-80097016(-)$1	268	210	246	13.9775
eee!!dddd"""ddddoooooodddd]dddd]eeee	chr8:141108830-141109096(-)$1	266	110	146	14.3268
c!!ccc[bb[eeeeeooooooeeeeebbccc]ccc7	chr1:16259627-16259854(+)$1	227	71	107	12.9914
d[ccc[ccc"""aooooooa22ccc]cccdddd]a2	chr10:126745846-126746091(-)$1	245	26	62	13.9666
dddd!!dddd[ddddoooooodddddddddddd]bb	chr16:88836355-88836637(-)$1	282	245	281	13.7498
ccccccgggggggcccnnnnnccc]ggggggg]ccc	chr13:92001030-92001255(+)$1	225	85	121	12.7252
:ccc!!iiiiiiiiiooooooiiiiiiiiiccc===	chr4:1231779-1232026(-)$1	247	123	159	14.8989
dd[ccc!!ccc!!bbmmmmbb]ccc333ccc]dddd	chr4:515963-516237(+)$1	274	26	62	11.5817
ffff[dddd[a[cccnnnnnccc]a]dddd333fff	chr11:62299445-62299694(-)$1	249	109	145	12.3917
gggggggbb"""cccoooooocccbb]ggggggg]c	chr17:20801125-20801398(+)$1	273	176	212	16.1268
!bb[ggggggg[cccooooooccc]ggggggg]bb2	chr1:76209791-76210065(+)$1	274	165	201	15.1354
ccccccccc"""cccooooooccc4444ccc]cccF	chr12:132219348-132219618(+)$1	270	127	163	18.2257
eeeee===========mmmm===========333ee	chr6:4948014-4948241(+)$1	227	174	210	12.2483
:dddd[ccc"""cccooooooccc4444ccc]dddd	chr16:89585078-89585354(+)$1	276	199	235	17.0266
========="""cccmmmmccc===========22f	chr4:763952-764205(-)$1	253	176	212	13.2373
eeee!!bb[ccccccooooooccc]cccbb333eee	chr22:20836318-20836561(-)$1	243	5	41	15.1019
iiiii!!ddddddddoooooodddd]dddd333iii	chr16:89034613-89034877(-)$1	264	59	95	15.8237
[dddd"""eeeee[aooooooa]eeeee333ddddb	chr16:88988413-88988626(-)$1	213	121	157	13.0081
a[ggggggg!!ddddnnnnndddd4444ggggggg]	chr7:1131018-1131308(-)$1	290	106	142	13.4790
#ccc!!a####eeeeennnnneeeee333a22ccc4	chr7:2147098-2147404(-)$1	306	219	255	12.2048
cc[ccc[iiiiiiiiiooooooiiiiiiiii]ccc]	chr22:47458153-47458405(+)$1	252	51	87	14.9872
gg[cccdddd####aooooooa4444dddd4444cc	chr11:62284330-62284611(-)$1	281	152	188	16.2411
fffffffff!!ddddoooooodddd]ffffff22ff	chr9:139559522-139559760(+)$1	238	8	44	13.1388
iiiiiiiii####cccnnnnnccc333iiiiiiiii	chr19:955604-955833(+)$1	229	21	57	15.6479
ccc!!ffffffccccccmmmmccc4444ccc]ffff	chr4:755556-755832(+)$1	276	181	217	11.7330
gggg"""dddd!!bboooooobb22dddd22ggggg	chr13:114528903-114529210(+)$1	307	128	164	14.4230
[eeeee[bb[a[cccooooooccc]a22bbeeeee]	chr7:158568213-158568447(-)$1	234	118	154	14.5664
[dddd####a[ddddoooooodddd]a333dddd]d	chr4:13603125-13603370(-)$1	245	108	144	14.9640

#otherMatches

#Seq PSSM
GAGGCCUAUAACCUGCAGGAACGGGCGGGCCUUGCC	chr4:1229845-1230094(-)$1	249	148	184	16.0705
AACGAAGCCCCAGCUGAUCUGGGCCAGGGUUCCCCC	chr19:510768-511024(+)$1	256	35	71	13.3799
UCUCUGCCUGGUGCUGGGUUUGGUGGUUGGCAGGGG	chr1:1281655-1281940(-)$1	285	61	97	13.1133
CCUCUGACGUUUCCCCAUCCCGGGUGCCGUGGGGCC	chr17:20798765-20799049(+)$1	284	122	158	17.9267
CAGCAGCUCGGUCUCCUGUGAGGGGCCCCGGGGGUU	chr19:5048937-5049267(+)$1	330	55	91	14.1538
GGAGGCCUACAGGAAGCAGGUCAGAGUCCCUGGGCC	chr2:97495940-97496181(-)$1	241	3	39	15.3997
GGGUUGAGGGCGUGAAUCUCCAGCCUCCGUUCAGCC	chr16:85658110-85658341(+)$1	231	155	191	13.2611
cugcugcgagacuuggaaaaauaaggacugggaaga	chr7:30597826-30598104(-)$1	278	16	52	13.5109
gucauguuuaaagauagagauauuaaauaauuugac	chr9:138358632-138358940(-)$1	308	29	65	12.8193
cgagucaggcagggguggcaggcugcugugaggacu	chr5:292699-293059(+)$1	360	142	178	13.0725
cucugccauucuuccucuucugggaguggcuggggu	chr8:607871-608133(-)$1	262	210	246	14.0015
GCGACACCUGAGACUCAGAACAGACGGAGGGGAAGC	chr4:1828585-1828854(-)$1	269	155	191	15.6392
GGGACCACUGUCUACACCCAGGGAGUCAGGAGCAGC	chr16:89183777-89184027(+)$1	250	134	170	15.1295
ucucuugcucccucccaguuugggCCAGGGCCAGGG	chr8:610642-610892(-)$1	250	157	193	14.1223
CUCAGGCUGGCAUGGGAGCAGUCAACGCAGGUUGGC	chr19:19211846-19212115(+)$1	269	164	200	18.1517
GCGGGUCAGCAGGUCAGGUGAGAGGGGCUAGCCGGC	chr17:46695528-46695806(-)$1	278	98	134	15.6944
CUCUGCCUGCUCUGCCGCCGAGGCCCGGGGAUGGGA	chr19:2425608-2425862(-)$1	254	146	182	14.0320
gCCGGGGCGUUCGGCAUCUGAGCCGGGGCCCACGGG	chr17:1465453-1465718(-)$1	265	123	159	12.9434
guccuaugaaaugcuaccacaagcccuuucuggcaa	chr15:29235644-29235867(+)$1	223	19	55	14.9359
uggaggcgauugcgcucgugacaaaagccagacaca	chr22:50013912-50014185(-)$1	273	1	37	14.6004
UCCAAGGCUGCAGAGUUGUAAAGCGGGGGGUGGGGC	chr15:29241039-29241296(+)$1	257	86	122	12.8929
UGGAUGUUCGAGGCCCAGACUGGCACCUGAAGAUGC	chr11:62289982-62290225(-)$1	243	98	134	13.5016
UCACGUUAAAGUAAGGUGACACCUAAGUUAACGUAA	chr17:80096748-80097016(-)$1	268	210	246	13.9775
UCUGGGCGGGCGUCAUUACUUUGUGGAUCGCGGGAU	chr8:141108830-141109096(-)$1	266	110	146	14.3268
GAAGUCACUCUUGUUCGGAAAGACAAAGGGCGCCAG	chr1:16259627-16259854(+)$1	227	71	107	12.9914
CCGAUCAGUGAAUGGACAAAGAGCUAAUUGCCAGUC	chr10:126745846-126746091(-)$1	245	26	62	13.9666
GUAGGUUAGGAGGGCCUCAGAGCCCCCUGCUGCCCC	chr16:88836355-88836637(-)$1	282	245	281	13.7498
GCCUCGGGCCGCGUGCGACGGGCACCGCGGCCGCGG	chr13:92001030-92001255(+)$1	225	85	121	12.7252
CGGCAGGCCCGGGCCACAGCAGGUCUGGGUGCCACU	chr4:1231779-1232026(-)$1	247	123	159	14.8989
GUUACCAAGGUGAUUGUAAAGAGCUGGCGGUCACAG	chr4:515963-516237(+)$1	274	26	62	11.5817
AGUGGAUGUGAACCUGCCCAAGGCUGAUGUGGACAU	chr11:62299445-62299694(-)$1	249	109	145	12.3917
GCCUGUGGCCAGAGCAAGAAAGCUGCACACGGGCAG	chr17:20801125-20801398(+)$1	273	176	212	16.1268
UAGGUUCUGCUUUUGGGGCUGCAGCAGCAGGAGCUU	chr1:76209791-76210065(+)$1	274	165	201	15.1354
CCCGCUCCGAGAGACAGACAGGUCAGGCCGGAAGCG	chr12:132219348-132219618(+)$1	270	127	163	18.2257
GGGACGUGGGUGGCUUAUCCAAGUCAUUUGCUUUGU	chr6:4948014-4948241(+)$1	227	174	210	12.2483
gagcuugguggaccgucguggugggagagccuggcu	chr16:89585078-89585354(+)$1	276	199	235	17.0266
UACACAUAUGUAGCAUGCAUGUGUGUGUGUGCGGCC	chr4:763952-764205(-)$1	253	176	212	13.2373
UGAGCAGGCAUGUGAUAACAUUCAGCAUCCAUUCUC	chr22:20836318-20836561(-)$1	243	5	41	15.1019
CCCCUCAGCUGGGGCUUCCUCGUCUGCAGUGCAAGG	chr16:89034613-89034877(-)$1	264	59	95	15.8237
AUGUCCUGGCCACGACACGUUUGguggcaucgacac	chr16:88988413-88988626(-)$1	213	121	157	13.0081
GGGUUUGUUAACUGCAGAGAGUGGGAAGAACAGAUG	chr7:1131018-1131308(-)$1	290	106	142	13.4790
ACAGCAUGAUUGCAGCGGGCAGCUGUUGAAGACUGG	chr7:2147098-2147404(-)$1	306	219	255	12.2048
CUGGGAAUUUGGACACCUGCUUGUGUCUGAGGUCUG	chr22:47458153-47458405(+)$1	252	51	87	14.9872
UGGGAAAGUUAAAGGGAAACACGGGAAGCUGAAAUU	chr11:62284330-62284611(-)$1	281	152	188	16.2411
GCCUGUGGAUUCGCUGGGAGGAGUGUUCUGCGAUGG	chr9:139559522-139559760(+)$1	238	8	44	13.1388
GUUUucucacacacucuauuugagagauggggaaac	chr19:955604-955833(+)$1	229	21	57	15.6479
GCAUGGGUCUGGUGUCGUUUUUGAAAAUCGCUCAGG	chr4:755556-755832(+)$1	276	181	217	11.7330
GAGGCAGGGUGGGGCCGAGCAGUAACACUAUCCUCA	chr13:114528903-114529210(+)$1	307	128	164	14.4230
gccugaagagggggcugaauugcugcagucucagga	chr7:158568213-158568447(-)$1	234	118	154	14.5664
GGUUACAGGUGCAGGUGUUGUCCUGGGAGAUAAUGA	chr4:13603125-13603370(-)$1	245	108	144	14.9640

#DB
(((((((....((((......)))).))))))).))	chr4:1229845-1230094(-)$1	1	148	184	16.0705
.))).(((((..(((......)))..)))))(((((	chr19:510768-511024(+)$1	1	35	71	13.3799
((((((((.(.((((......)))).).))))))))	chr1:1281655-1281940(-)$1	1	61	97	13.1133
((....(((...(((......)))...))))))).)	chr17:20798765-20799049(+)$1	1	122	158	17.9267
(((((((((((((((......))))))....)))))	chr19:5048937-5049267(+)$1	1	55	91	14.1538
(((((((((..(((..(......)..))).))))))	chr2:97495940-97496181(-)$1	1	3	39	15.3997
(((((((((((.((......))))))....))))))	chr16:85658110-85658341(+)$1	1	155	191	13.2611
((.((.(.((.((((......))))..)).)..)).	chr7:30597826-30598104(-)$1	1	16	52	13.5109
((((.(((....((((....))))....))).))))	chr9:138358632-138358940(-)$1	1	29	65	12.8193
((((((..((((.(((.....))).))))...))))	chr5:292699-293059(+)$1	1	142	178	13.0725
(((.(((((((..((......))))))))).)))))	chr8:607871-608133(-)$1	1	210	246	14.0015
((..(.(((..(.((......)).)..))).)..))	chr4:1828585-1828854(-)$1	1	155	191	15.6392
(((.(..(((.((.(......).)).)))..)...)	chr16:89183777-89184027(+)$1	1	134	170	15.1295
(((((.((((...((((...))))...)))).))))	chr8:610642-610892(-)$1	1	157	193	14.1223
.((((.(((...(((......)))...))).)))).	chr19:19211846-19212115(+)$1	1	164	200	18.1517
((.(((.(((...((......))...))).))).))	chr17:46695528-46695806(-)$1	1	98	134	15.6944
((.(.((((....(((.....))).)))).).))).	chr19:2425608-2425862(-)$1	1	146	182	14.0320
.(((((((.((((((......)))))))))).))).	chr17:1465453-1465718(-)$1	1	123	159	12.9434
..((...((((.(((......)))..)))).))..)	chr15:29235644-29235867(+)$1	1	19	55	14.9359
(((.(((..((((......).)))..)))...).))	chr22:50013912-50014185(-)$1	1	1	37	14.6004
(((...(((.(...(((....)))..).))).))))	chr15:29241039-29241296(+)$1	1	86	122	12.8929
)))((.((((.((((......))).).)))).))))	chr11:62289982-62290225(-)$1	1	98	134	13.5016
(.(((((((....((((...))))...)))))))..	chr17:80096748-80097016(-)$1	1	210	246	13.9775
(((..((((...((((......)))).)))).))))	chr8:141108830-141109096(-)$1	1	110	146	14.3268
(..(((.((.(((((......)))))))))).))).	chr1:16259627-16259854(+)$1	1	71	107	12.9914
(.(((.(((...(......)..))).))))))).).	chr10:126745846-126746091(-)$1	1	26	62	13.9666
((((..((((.((((......)))))))))))).))	chr16:88836355-88836637(-)$1	1	245	281	13.7498
)))(((((((((((((.....))).))))))).)))	chr13:92001030-92001255(+)$1	1	85	121	12.7252
.(((..(((((((((......))))))))))))(((	chr4:1231779-1232026(-)$1	1	123	159	14.8989
((.(((..(((..((....)).)))...))).))))	chr4:515963-516237(+)$1	1	26	62	11.5817
((((.((((.(.(((.....))).).))))...)))	chr11:62299445-62299694(-)$1	1	109	145	12.3917
(((((((((...(((......))))).))))))).)	chr17:20801125-20801398(+)$1	1	176	212	16.1268
.((.(((((((.(((......))).))))))).)).	chr1:76209791-76210065(+)$1	1	165	201	15.1354
)))((((((...(((......)))....))).)))(	chr12:132219348-132219618(+)$1	1	127	163	18.2257
((((((((((((((((....)))))))))))...))	chr6:4948014-4948241(+)$1	1	174	210	12.2483
.((((.(((...(((......)))....))).))))	chr16:89585078-89585354(+)$1	1	199	235	17.0266
(((((((((...(((....))))))))))))))..)	chr4:763952-764205(-)$1	1	176	212	13.2373
((((..((.((((((......))).)))))...)))	chr22:20836318-20836561(-)$1	1	5	41	15.1019
(((((..((((((((......)))).))))...)))	chr16:89034613-89034877(-)$1	1	59	95	15.8237
.((((...(((((.(......).)))))...)))))	chr16:88988413-88988626(-)$1	1	121	157	13.0081
(.(((((((..((((.....))))....))))))).	chr7:1131018-1131308(-)$1	1	106	142	13.4790
.(((..(....(((((.....)))))...)..))).	chr7:2147098-2147404(-)$1	1	219	255	12.2048
((.(((.(((((((((......))))))))).))).	chr22:47458153-47458405(+)$1	1	51	87	14.9872
((.(((((((....(......)....))))....))	chr11:62284330-62284611(-)$1	1	152	188	16.2411
(((((((((..((((......)))).))))))..))	chr9:139559522-139559760(+)$1	1	8	44	13.1388
(((((((((....(((.....)))...)))))))))	chr19:955604-955833(+)$1	1	21	57	15.6479
(((..((((((((((((....)))....))).))))	chr4:755556-755832(+)$1	1	181	217	11.7330
((((...((((..((......))..))))..)))))	chr13:114528903-114529210(+)$1	1	128	164	14.4230
.(((((.((.(.(((......))).)..))))))).	chr7:158568213-158568447(-)$1	1	118	154	14.5664
.((((....(.((((......)))).)...)))).)	chr4:13603125-13603370(-)$1	1	108	144	14.9640

#PSSM
c : 0.19	d : 0.14	g : 0.12	e : 0.10	= : 0.08	[ : 0.08	! : 0.06	: : 0.04	f : 0.04	i : 0.04	q : 0.02	h : 0.02	b : 0.02	a : 0.02	# : 0.02	
c : 0.23	d : 0.19	g : 0.12	e : 0.12	= : 0.08	[ : 0.06	b : 0.04	! : 0.04	f : 0.04	i : 0.04	h : 0.02	
c : 0.19	g : 0.14	d : 0.14	[ : 0.12	e : 0.10	= : 0.08	! : 0.04	b : 0.04	f : 0.04	i : 0.04	h : 0.02	# : 0.02	a : 0.02	
c : 0.23	g : 0.14	d : 0.12	= : 0.08	[ : 0.08	b : 0.06	! : 0.06	e : 0.06	f : 0.04	i : 0.04	h : 0.02	# : 0.02	a : 0.02	" : 0.02	
c : 0.18	g : 0.16	! : 0.12	d : 0.10	= : 0.08	[ : 0.06	" : 0.06	b : 0.04	a : 0.04	e : 0.04	i : 0.04	: : 0.02	h : 0.02	# : 0.02	f : 0.02	
c : 0.18	g : 0.16	[ : 0.14	! : 0.12	= : 0.08	d : 0.08	" : 0.08	e : 0.04	# : 0.04	f : 0.04	h : 0.02	i : 0.02	
c : 0.18	g : 0.16	d : 0.16	= : 0.08	! : 0.08	[ : 0.08	" : 0.06	a : 0.04	i : 0.04	f : 0.04	e : 0.02	h : 0.02	b : 0.02	# : 0.02	
d : 0.23	c : 0.19	g : 0.10	= : 0.08	b : 0.08	# : 0.06	! : 0.06	i : 0.06	f : 0.04	e : 0.02	h : 0.02	[ : 0.02	" : 0.02	
d : 0.23	c : 0.19	g : 0.10	# : 0.08	= : 0.08	b : 0.08	[ : 0.06	i : 0.06	e : 0.04	f : 0.04	! : 0.02	
d : 0.18	" : 0.16	# : 0.12	c : 0.10	! : 0.08	[ : 0.08	f : 0.06	g : 0.06	e : 0.04	a : 0.04	i : 0.04	b : 0.02	= : 0.02	
" : 0.19	# : 0.14	[ : 0.12	! : 0.10	d : 0.10	f : 0.06	g : 0.06	c : 0.06	a : 0.06	e : 0.04	i : 0.04	= : 0.02	
" : 0.21	d : 0.18	[ : 0.10	# : 0.10	! : 0.08	c : 0.08	e : 0.06	f : 0.04	a : 0.04	i : 0.04	b : 0.02	g : 0.02	= : 0.02	
c : 0.30	d : 0.19	# : 0.08	! : 0.06	" : 0.06	e : 0.06	f : 0.04	b : 0.04	[ : 0.04	a : 0.04	i : 0.04	g : 0.02	= : 0.02	
c : 0.38	d : 0.23	b : 0.12	f : 0.04	[ : 0.04	o : 0.04	e : 0.04	i : 0.04	" : 0.02	= : 0.02	# : 0.02	
c : 0.38	d : 0.23	b : 0.10	o : 0.06	a : 0.06	f : 0.04	e : 0.04	i : 0.04	! : 0.02	= : 0.02	
o : 0.64	c : 0.12	d : 0.08	m : 0.04	n : 0.04	! : 0.02	= : 0.02	e : 0.02	i : 0.02	
o : 0.68	n : 0.14	m : 0.08	d : 0.04	c : 0.04	a : 0.02	
o : 0.70	n : 0.14	m : 0.12	l : 0.04	
o : 0.70	n : 0.14	m : 0.12	l : 0.04	
o : 0.66	n : 0.14	m : 0.08	l : 0.04	a : 0.04	b : 0.02	c : 0.02	
o : 0.64	n : 0.10	d : 0.08	b : 0.04	m : 0.04	c : 0.04	] : 0.02	2 : 0.02	= : 0.02	
c : 0.40	d : 0.21	b : 0.10	o : 0.06	a : 0.06	f : 0.04	e : 0.04	2 : 0.02	i : 0.02	] : 0.02	= : 0.02	
c : 0.42	d : 0.25	b : 0.08	f : 0.04	] : 0.04	e : 0.04	i : 0.04	= : 0.04	o : 0.02	4 : 0.02	
c : 0.40	d : 0.25	e : 0.06	f : 0.04	] : 0.04	i : 0.04	= : 0.04	a : 0.02	g : 0.02	b : 0.02	3 : 0.02	4 : 0.02	2 : 0.02	
d : 0.18	] : 0.14	2 : 0.12	3 : 0.12	4 : 0.12	e : 0.06	f : 0.04	a : 0.04	b : 0.04	c : 0.04	i : 0.04	= : 0.04	g : 0.02	
] : 0.16	2 : 0.14	3 : 0.14	d : 0.12	4 : 0.12	g : 0.06	e : 0.06	f : 0.04	a : 0.04	i : 0.04	= : 0.04	b : 0.02	c : 0.02	
d : 0.16	3 : 0.14	c : 0.12	4 : 0.12	g : 0.08	a : 0.06	f : 0.06	2 : 0.06	] : 0.06	e : 0.04	i : 0.04	= : 0.04	b : 0.02	
d : 0.23	c : 0.18	4 : 0.14	g : 0.12	i : 0.06	3 : 0.06	e : 0.04	] : 0.04	b : 0.04	= : 0.04	f : 0.02	2 : 0.02	
c : 0.30	d : 0.23	g : 0.14	b : 0.06	i : 0.06	3 : 0.06	4 : 0.04	= : 0.04	e : 0.02	h : 0.02	f : 0.02	
c : 0.19	d : 0.19	g : 0.14	] : 0.08	3 : 0.08	i : 0.06	4 : 0.04	2 : 0.04	= : 0.04	b : 0.04	e : 0.02	h : 0.02	a : 0.02	f : 0.02	
c : 0.18	d : 0.16	g : 0.14	3 : 0.12	] : 0.08	= : 0.06	2 : 0.06	e : 0.04	4 : 0.04	a : 0.04	i : 0.04	h : 0.02	f : 0.02	
] : 0.25	g : 0.16	d : 0.12	3 : 0.12	= : 0.06	f : 0.04	2 : 0.04	e : 0.04	a : 0.04	c : 0.04	h : 0.02	b : 0.02	4 : 0.02	i : 0.02	
d : 0.19	c : 0.16	g : 0.14	3 : 0.10	= : 0.08	2 : 0.06	e : 0.06	f : 0.04	b : 0.04	] : 0.04	h : 0.02	a : 0.02	4 : 0.02	i : 0.02	
d : 0.16	c : 0.14	g : 0.12	] : 0.10	= : 0.08	e : 0.08	2 : 0.08	f : 0.06	b : 0.06	3 : 0.04	i : 0.04	h : 0.02	4 : 0.02	
c : 0.19	d : 0.12	e : 0.12	f : 0.08	= : 0.08	g : 0.08	b : 0.08	] : 0.06	3 : 0.04	2 : 0.04	i : 0.04	h : 0.02	D : 0.02	a : 0.02	
c : 0.12	] : 0.12	f : 0.10	d : 0.10	e : 0.10	= : 0.08	g : 0.08	2 : 0.06	b : 0.06	i : 0.04	h : 0.02	a : 0.02	D : 0.02	3 : 0.02	7 : 0.02	F : 0.02	4 : 0.02	

#score	716.2837116932924
#seq	50
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_transcript_m2_run1.txt

#BEAR
eeeqqqqqqqqeeee	chr6:87970248-87970555(+)$1	307	171	186	12.7250
eeeqqqqqqqqeeee	chr1:165723364-165723613(-)$1	249	37	52	12.7250
cccqqqqqqqqccc:	chrM:12653-12861(+)$1	208	20	35	12.6233
!bbqqqqqqqqbb22	chr5:134260964-134261240(+)$1	276	88	103	11.8633
eeeqqqqqqqqeeee	chr3:6618194-6618466(+)$1	272	34	49	12.7250
cccqqqqqqqqccc2	chr4:769614-769913(-)$1	299	202	217	13.1772
gggqqqqqqqqgggg	chr20:32681408-32681637(-)$1	229	168	183	12.7172
gggqqqqqqqqgggg	chrM:12513-12766(+)$1	253	125	140	12.7172
dddqqqqqqqqdddd	chr2:55253846-55254193(-)$1	347	203	218	14.1747
cccqqqqqqqqcccb	chr14:56107746-56108026(+)$1	280	254	269	13.1739
!!aqqqqqqqqa]gg	chr8:101725257-101725496(-)$1	239	199	214	12.7386
dddqqqqqqqqdddd	chr11:62293662-62293889(-)$1	227	155	170	14.1747
dddqqqqqqqqdddd	chr2:168740854-168741139(-)$1	285	261	276	14.1747
g[aqqqqqqqqa]gg	chrM:3087-3289(+)$1	202	96	111	12.6272
cccqqqqqqqqccc:	chrM:12661-12887(+)$1	226	12	27	12.6233
dddqqqqqqqqdddd	chr7:119427019-119427281(-)$1	262	144	159	14.1747
dddqqqqqqqqdddd	chr11:62298842-62299120(-)$1	278	103	118	14.1747
cccqqqqqqqqccc:	chrM:12643-12853(+)$1	210	30	45	12.6233
dddqqqqqqqqdddd	chrM:14416-14644(-)$1	228	116	131	14.1747
cccqqqqqqqqccc]	chr5:70806029-70806277(+)$1	248	7	22	13.3697
cccqqqqqqqqccc]	chr8:91283668-91283972(+)$1	304	166	181	13.3697
hhhqqqqqqqqhhhh	chr9:134080186-134080463(+)$1	277	226	241	11.9661
cccqqqqqqqqccc4	chr10:18858762-18859031(-)$1	269	141	156	13.3381
dddqqqqqqqqdddd	chr8:91267366-91267642(+)$1	276	4	19	14.1747
dbbqqqqqqqqbb]d	chr3:37366942-37367158(+)$1	216	28	43	12.6333
:bbqqqqqqqqbbcc	chr8:91386277-91386581(+)$1	304	151	166	11.4231
eeeqqqqqqqqeeee	chr8:91269600-91269874(+)$1	274	174	189	12.7250
[bbqqqqqqqqbbbb	chr7:119438012-119438304(-)$1	292	161	176	11.7870
dddqqqqqqqqdddd	chr5:33467644-33467905(+)$1	261	191	206	14.1747
[bbqqqqqqqqbbdd	chr11:2672724-2672996(-)$1	272	229	244	12.7210
gggqqqqqqqqgggg	chr5:72286241-72286543(+)$1	302	249	264	12.7172
dddqqqqqqqqdddd	chr5:10264737-10265057(+)$1	320	275	290	14.1747
dddqqqqqqqqdddd	chr12:6690356-6690607(-)$1	251	118	133	14.1747
dddqqqqqqqqdddd	chr14:61278600-61278930(+)$1	330	287	302	14.1747
cccqqqqqqqqccc:	chr7:91667875-91668120(+)$1	245	127	142	12.6233
dddqqqqqqqqdddd	chr7:120896982-120897244(+)$1	262	99	114	14.1747
dddqqqqqqqqdddd	chr8:91384981-91385265(+)$1	284	94	109	14.1747
dddqqqqqqqqdddd	chr18:9254585-9254877(+)$1	292	228	243	14.1747
dddqqqqqqqqdddd	chr7:119433319-119433575(-)$1	256	21	36	14.1747
[bbqqqqqqqqbb]c	chr10:18854936-18855219(-)$1	283	40	55	12.2739
dddqqqqqqqqdddd	chr16:20687273-20687649(+)$1	376	329	344	14.1747
dddqqqqqqqqdddd	chr10:18856331-18856616(-)$1	285	12	27	14.1747
gggqqqqqqqqgggg	chrM:12622-12843(+)$1	221	16	31	12.7172
dddqqqqqqqqdddd	chr1:171526286-171526511(+)$1	225	36	51	14.1747
dddqqqqqqqqdddd	chr7:102545765-102546070(-)$1	305	23	38	14.1747
cccqqqqqqqqccc:	chr11:62291603-62291812(-)$1	209	147	162	12.6233
dddqqqqqqqqdddd	chrM:14367-14602(-)$1	235	74	89	14.1747
!!aqqqqqqqqa22e	chr7:158485905-158486185(-)$1	280	126	141	12.2993
dddqqqqqqqqdddd	chr4:770808-771123(-)$1	315	182	197	14.1747
dddqqqqqqqqdddd	chr4:13605609-13605939(-)$1	330	287	302	14.1747
[bbqqqqqqqqbb]c	chr3:37365765-37366020(+)$1	255	46	61	12.2739
dddqqqqqqqqdddd	chr3:37368338-37368589(+)$1	251	8	23	14.1747
dddqqqqqqqqdddd	chr11:62284793-62285044(-)$1	251	116	131	14.1747
eeeqqqqqqqqeeee	chr1:214816305-214816544(+)$1	239	164	179	12.7250
cccqqqqqqqqccc:	chr5:171368834-171369179(-)$1	345	0	15	12.6233
cccqqqqqqqqcccd	chr4:770490-770805(-)$1	315	171	186	13.6037
===qqqqqqqq====	chr12:122992666-122992913(-)$1	247	222	237	12.8624

#otherMatches

#Seq PSSM
CUCUGAAACGUGGGA	chr6:87970248-87970555(+)$1	307	171	186	12.7250
GUUUAUUUAACAGCU	chr1:165723364-165723613(-)$1	249	37	52	12.7250
AACAUUAAUCAGUUC	chrM:12653-12861(+)$1	208	20	35	12.6233
AUGGUUUUGAGUAGU	chr5:134260964-134261240(+)$1	276	88	103	11.8633
ucauuugaaauugag	chr3:6618194-6618466(+)$1	272	34	49	12.7250
UGCCCCACAAAGUAA	chr4:769614-769913(-)$1	299	202	217	13.1772
UAUACAUUUACAUAC	chr20:32681408-32681637(-)$1	229	168	183	12.7172
UAGAAUUCUCACUGU	chrM:12513-12766(+)$1	253	125	140	12.7172
CUUGGAAAGUAAAGU	chr2:55253846-55254193(-)$1	347	203	218	14.1747
UACUACGUUUUGUAU	chr14:56107746-56108026(+)$1	280	254	269	13.1739
AGCAGGAAGAAGGGG	chr8:101725257-101725496(-)$1	239	199	214	12.7386
CCCAAAGUGAAGGGU	chr11:62293662-62293889(-)$1	227	155	170	14.1747
gaggaggaaaguuuc	chr2:168740854-168741139(-)$1	285	261	276	14.1747
UCAUCUCAACUUAGU	chrM:3087-3289(+)$1	202	96	111	12.6272
AACAUUAAUCAGUUC	chrM:12661-12887(+)$1	226	12	27	12.6233
ccacuaaaaaauggg	chr7:119427019-119427281(-)$1	262	144	159	14.1747
CCUAAAGUAAAGGGA	chr11:62298842-62299120(-)$1	278	103	118	14.1747
AACAUUAAUCAGUUC	chrM:12643-12853(+)$1	210	30	45	12.6233
UUAUAUGGGUUUAAU	chrM:14416-14644(-)$1	228	116	131	14.1747
ACUGAAAGAGAAGUA	chr5:70806029-70806277(+)$1	248	7	22	13.3697
UCAAGGUCCAAUGAG	chr8:91283668-91283972(+)$1	304	166	181	13.3697
gaaaucaagacuuuu	chr9:134080186-134080463(+)$1	277	226	241	11.9661
auggggaguaguaug	chr10:18858762-18859031(-)$1	269	141	156	13.3381
agaaaacaaaaucua	chr8:91267366-91267642(+)$1	276	4	19	14.1747
CCUAGAGGACAAGAG	chr3:37366942-37367158(+)$1	216	28	43	12.6333
gccaaccaacaggau	chr8:91386277-91386581(+)$1	304	151	166	11.4231
ucucuauuaacagau	chr8:91269600-91269874(+)$1	274	174	189	12.7250
caguccuaaaucucu	chr7:119438012-119438304(-)$1	292	161	176	11.7870
UCCAUGGAAAAGGAG	chr5:33467644-33467905(+)$1	261	191	206	14.1747
acacacucauaugcc	chr11:2672724-2672996(-)$1	272	229	244	12.7210
AAUACUUUAUAGUUC	chr5:72286241-72286543(+)$1	302	249	264	12.7172
AUAAAAAUAGCUGUU	chr5:10264737-10265057(+)$1	320	275	290	14.1747
GUUAAAUCUACAGCC	chr12:6690356-6690607(-)$1	251	118	133	14.1747
GGAUUUACCUUUCCU	chr14:61278600-61278930(+)$1	330	287	302	14.1747
GAUAUACCAGAAUCA	chr7:91667875-91668120(+)$1	245	127	142	12.6233
auggacauaaacaug	chr7:120896982-120897244(+)$1	262	99	114	14.1747
ggcaaaugaaaguua	chr8:91384981-91385265(+)$1	284	94	109	14.1747
GAGGAGGGGAACUUU	chr18:9254585-9254877(+)$1	292	228	243	14.1747
ggacuaaauucucca	chr7:119433319-119433575(-)$1	256	21	36	14.1747
guggaauggaaugga	chr10:18854936-18855219(-)$1	283	40	55	12.2739
caccuacaaaagugc	chr16:20687273-20687649(+)$1	376	329	344	14.1747
gcggaauggaaugca	chr10:18856331-18856616(-)$1	285	12	27	14.1747
UAGAAUUCUCACUGU	chrM:12622-12843(+)$1	221	16	31	12.7172
GAACUGUUGCAUUCA	chr1:171526286-171526511(+)$1	225	36	51	14.1747
ggacuaaacucucca	chr7:102545765-102546070(-)$1	305	23	38	14.1747
GAGUAUUUCAUCUCC	chr11:62291603-62291812(-)$1	209	147	162	12.6233
UUAUAUGGGUUUAAU	chrM:14367-14602(-)$1	235	74	89	14.1747
GGCAGGUAGUGGAAG	chr7:158485905-158486185(-)$1	280	126	141	12.2993
auaaaguucaaugua	chr4:770808-771123(-)$1	315	182	197	14.1747
UCUAAAGUUGAAGAC	chr4:13605609-13605939(-)$1	330	287	302	14.1747
AGCAGACAAAAGCAU	chr3:37365765-37366020(+)$1	255	46	61	12.2739
CUCAAAUGGAAGAGA	chr3:37368338-37368589(+)$1	251	8	23	14.1747
GAAAAGUAACAUUCC	chr11:62284793-62285044(-)$1	251	116	131	14.1747
UGCCUUAGGAAGCAG	chr1:214816305-214816544(+)$1	239	164	179	12.7250
acauccuccuuugua	chr5:171368834-171369179(-)$1	345	0	15	12.6233
uggggguggagccau	chr4:770490-770805(-)$1	315	171	186	13.6037
AAAAAUAUUACUUUC	chr12:122992666-122992913(-)$1	247	222	237	12.8624

#DB
(((........))))	chr6:87970248-87970555(+)$1	1	171	186	12.7250
(((........))))	chr1:165723364-165723613(-)$1	1	37	52	12.7250
(((........))).	chrM:12653-12861(+)$1	1	20	35	12.6233
.((........))..	chr5:134260964-134261240(+)$1	1	88	103	11.8633
(((........))))	chr3:6618194-6618466(+)$1	1	34	49	12.7250
(((........))).	chr4:769614-769913(-)$1	1	202	217	13.1772
(((........))))	chr20:32681408-32681637(-)$1	1	168	183	12.7172
(((........))))	chrM:12513-12766(+)$1	1	125	140	12.7172
(((........))))	chr2:55253846-55254193(-)$1	1	203	218	14.1747
(((........))))	chr14:56107746-56108026(+)$1	1	254	269	13.1739
..(........).))	chr8:101725257-101725496(-)$1	1	199	214	12.7386
(((........))))	chr11:62293662-62293889(-)$1	1	155	170	14.1747
(((........))))	chr2:168740854-168741139(-)$1	1	261	276	14.1747
(.(........).))	chrM:3087-3289(+)$1	1	96	111	12.6272
(((........))).	chrM:12661-12887(+)$1	1	12	27	12.6233
(((........))))	chr7:119427019-119427281(-)$1	1	144	159	14.1747
(((........))))	chr11:62298842-62299120(-)$1	1	103	118	14.1747
(((........))).	chrM:12643-12853(+)$1	1	30	45	12.6233
(((........))))	chrM:14416-14644(-)$1	1	116	131	14.1747
(((........))).	chr5:70806029-70806277(+)$1	1	7	22	13.3697
(((........))).	chr8:91283668-91283972(+)$1	1	166	181	13.3697
(((........))))	chr9:134080186-134080463(+)$1	1	226	241	11.9661
(((........))).	chr10:18858762-18859031(-)$1	1	141	156	13.3381
(((........))))	chr8:91267366-91267642(+)$1	1	4	19	14.1747
(((........)).)	chr3:37366942-37367158(+)$1	1	28	43	12.6333
.((........))((	chr8:91386277-91386581(+)$1	1	151	166	11.4231
(((........))))	chr8:91269600-91269874(+)$1	1	174	189	12.7250
.((........))))	chr7:119438012-119438304(-)$1	1	161	176	11.7870
(((........))))	chr5:33467644-33467905(+)$1	1	191	206	14.1747
.((........))))	chr11:2672724-2672996(-)$1	1	229	244	12.7210
(((........))))	chr5:72286241-72286543(+)$1	1	249	264	12.7172
(((........))))	chr5:10264737-10265057(+)$1	1	275	290	14.1747
(((........))))	chr12:6690356-6690607(-)$1	1	118	133	14.1747
(((........))))	chr14:61278600-61278930(+)$1	1	287	302	14.1747
(((........))).	chr7:91667875-91668120(+)$1	1	127	142	12.6233
(((........))))	chr7:120896982-120897244(+)$1	1	99	114	14.1747
(((........))))	chr8:91384981-91385265(+)$1	1	94	109	14.1747
(((........))))	chr18:9254585-9254877(+)$1	1	228	243	14.1747
(((........))))	chr7:119433319-119433575(-)$1	1	21	36	14.1747
.((........)).)	chr10:18854936-18855219(-)$1	1	40	55	12.2739
(((........))))	chr16:20687273-20687649(+)$1	1	329	344	14.1747
(((........))))	chr10:18856331-18856616(-)$1	1	12	27	14.1747
(((........))))	chrM:12622-12843(+)$1	1	16	31	12.7172
(((........))))	chr1:171526286-171526511(+)$1	1	36	51	14.1747
(((........))))	chr7:102545765-102546070(-)$1	1	23	38	14.1747
(((........))).	chr11:62291603-62291812(-)$1	1	147	162	12.6233
(((........))))	chrM:14367-14602(-)$1	1	74	89	14.1747
..(........)..)	chr7:158485905-158486185(-)$1	1	126	141	12.2993
(((........))))	chr4:770808-771123(-)$1	1	182	197	14.1747
(((........))))	chr4:13605609-13605939(-)$1	1	287	302	14.1747
.((........)).)	chr3:37365765-37366020(+)$1	1	46	61	12.2739
(((........))))	chr3:37368338-37368589(+)$1	1	8	23	14.1747
(((........))))	chr11:62284793-62285044(-)$1	1	116	131	14.1747
(((........))))	chr1:214816305-214816544(+)$1	1	164	179	12.7250
(((........))).	chr5:171368834-171369179(-)$1	1	0	15	12.6233
(((........))))	chr4:770490-770805(-)$1	1	171	186	13.6037
(((........))))	chr12:122992666-122992913(-)$1	1	222	237	12.8624

#PSSM
d : 0.43	c : 0.21	e : 0.08	g : 0.08	[ : 0.07	! : 0.05	h : 0.01	: : 0.01	= : 0.01	
d : 0.42	c : 0.21	b : 0.12	e : 0.08	g : 0.07	! : 0.03	[ : 0.01	h : 0.01	= : 0.01	
d : 0.42	c : 0.21	b : 0.12	e : 0.08	g : 0.07	a : 0.05	h : 0.01	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.42	c : 0.21	b : 0.12	e : 0.08	g : 0.07	a : 0.05	h : 0.01	= : 0.01	
d : 0.42	c : 0.21	b : 0.12	e : 0.08	g : 0.07	] : 0.03	h : 0.01	2 : 0.01	= : 0.01	
d : 0.43	c : 0.22	g : 0.10	e : 0.08	] : 0.05	2 : 0.03	h : 0.01	b : 0.01	= : 0.01	
d : 0.47	e : 0.10	: : 0.10	g : 0.10	c : 0.05	2 : 0.03	b : 0.03	] : 0.03	h : 0.01	4 : 0.01	= : 0.01	

#score	757.9308395310117
#seq	57
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_CDS_m1_run2.txt

#BEAR
!!ccc[a[ccc!!ddddmmmmdddd]ccc]accc333fff	chr2:241496664-241496977(-)$1	313	194	234	14.1964
c!!eeeee####ccccccmmmmccc]ccceeeee22ccc]	chr19:18547585-18547860(-)$1	275	51	91	14.8457
e[iiiiiiiii"""cccrrrrrrrrrccc333iiiiiiii	chr14:103576589-103576856(+)$1	267	160	200	13.4368
!!cccggggggg"""ccclllccc333ggggggg22ccc3	chr14:23992394-23992688(+)$1	294	34	74	16.2441
iiiii[gggggggrrrrrrrrrggggggg]iiiiiiiii2	chr8:145687806-145688072(-)$1	266	131	171	11.8801
!!dddd"""bb[bb!!ccclllccc333bb]bb]dddd22	chr21:46918258-46918529(+)$1	271	104	144	12.3655
dd[bb[gggggggeeeeemmmmeeeee333gggggggbb]	chr2:242755982-242756245(+)$1	263	27	67	12.9145
cccffffffccc[cccooooooccc]ccc]ffffff]ccc	chr9:139249969-139250268(+)$1	299	102	142	13.6245
!ccc####bbeeeeecccooooooccc]eeeee]bbccc2	chr21:46876520-46876757(+)$1	237	174	214	12.5518
bb####gggggggeeeeemmmmeeeee333ggggggg444	chr10:103599464-103599776(-)$1	312	28	68	13.4817
ccc####ffffff[cccoooooocccffffff333ccc33	chr22:42525212-42525544(+)$1	332	112	152	13.9060
Geeeee####bb[cccccclllccc333cccbb4444eee	chr1:19208254-19208539(-)$1	285	152	192	13.4827
e[iiiiiiiii"""cccrrrrrrrrrccc333iiiiiiii	chr14:103576703-103576910(+)$1	207	46	86	13.4368
eeee!!ccc"""a[ddddmmmmdddd]a333ccc]eeeee	chr4:1217183-1217505(-)$1	322	145	185	13.5430
e[ccc[ccc"""ccc[annnnna]ccccccccc]eeeee]	chr19:41858836-41859087(+)$1	251	132	172	12.9171
ffbbccc!!ccc[ccc[ammmma]ccccccccc]bb]fff	chr17:7311435-7311676(+)$1	241	128	168	13.9118
c"""a[dddd[a[a[cccmmmmccc]a]a]ddddaccc]b	chr19:56599527-56599789(-)$1	262	22	62	14.6479
ggccc[eeeee"""ddddmmmmdddd333eeeee4444cc	chr19:38876626-38876875(+)$1	249	158	198	13.8473
ddd:===========[bbmmmmbb]===========:ggg	chr11:637279-637544(+)$1	265	129	169	12.5197
gggggccc[ccc[cccccclllccc22ccc]cccccc]gg	chr2:54197730-54198054(-)$1	324	165	205	14.8604
ddccc[ggggggg!!cccmmmmccc]ggggggg]ccc22d	chr14:104165093-104165399(+)$1	306	182	222	16.1062
bb[==========[bb[allla]bb]==========]bb2	chr8:145754278-145754567(-)$1	289	9	49	13.7993
ccc[bbccc[ccc[cccnnnnnccc]cccccc22bb]ccc	chr1:234613904-234614160(-)$1	256	51	91	12.6067
c"""a[ffffff!!ddddmmmmdddd333ffffff]a444	chr9:132374593-132374847(+)$1	254	208	248	13.9703
eeeee[ffffff"""cccmmmmccc333ffffff]eeeee	chr13:114144690-114144940(-)$1	250	27	67	14.7535
[eeeeeiiiiiiiiirrrrrrrrriiiiiiiii333eeee	chr14:23993688-23993910(+)$1	222	156	196	11.8431
ffffff"""ccc[cccooooooccc]ccc333ffffffff	chr16:90015880-90016144(+)$1	264	65	105	14.2686
a[a!!dddd[ccc[ddddlllddddccc]ddddaaccc33	chr20:32251363-32251635(-)$1	272	58	98	12.0835
eeeeeeeee####cccccclllccc]ccc22eeeee4444	chr19:2811919-2812166(+)$1	247	196	236	13.5615
:ggggggg####ccc[ccclllccc]ccc333gggggggF	chr4:1217059-1217312(-)$1	253	201	241	13.7647
eeee!!hhhhhhhh[cccmmmmccc]hhhhhhhh]eeeee	chr19:460515-460754(-)$1	239	87	127	12.6843
e####a[ffffff[acccmmmmccc]a]ffffff]a333e	chr15:51386772-51387033(+)$1	261	165	205	14.8873
a!!bb[a!!ccc[eeeeemmmmeeeee]ccc22a]bb22a	chr21:47565650-47565867(-)$1	217	102	142	12.4567
ccccc[a[hhhhhhhh[aooooooahhhhhhhh]a]ccc]	chr16:89975268-89975496(+)$1	228	36	76	11.8405
fffgggggggdddd[cccmmmmccc22dddd]ggggggg]	chr2:231902554-231902863(+)$1	309	4	44	14.5184
""ccc[iiiiiiiiicccmmmmccc]iiiiiiiiiccc33	chr21:46929292-46929520(-)$1	228	155	195	17.6055
bb[ffffff[dddd[cccmmmmccc333dddd]ffffffb	chr12:132401794-132402059(+)$1	265	118	158	13.1627
[dddd[a"""ddddbbccclllccc333bb]dddd333a]	chr7:77166704-77166994(+)$1	290	159	199	13.3450
ccc"""eeeeebb"""bbmmmmbb333bb]eeeee]ccc]	chr16:448115-448361(+)$1	246	150	190	12.6655
"""cccbb"""eeeeeooooooeeeee4444bb]ccc333	chr16:15031873-15032176(+)$1	303	231	271	11.8712
ffffff[ggggggg[a[ammmmaa]ggggggg]ffffff]	chr21:46929119-46929371(-)$1	252	51	91	13.9139
ii[bb####dddd!!cccmmmmccc]dddd4444bb22ii	chr11:63766288-63766531(+)$1	243	40	80	13.8477
ggggggggggdddd[cccmmmmccc22dddd]ggggggg]	chr2:231902453-231902696(+)$1	243	105	145	14.8009
eeee"""iiiiiiiii[aooooooa]iiiiiiiii]eeee	chr11:111636970-111637244(-)$1	274	83	123	14.5951
fffff"""dddd"""cccmmmmccc333dddd]ffffff:	chr5:176867878-176868115(-)$1	237	169	209	14.0112
e[ccc[a[ccc!!ddddmmmmdddd]ccc]a]ccc]eeee	chr22:31672662-31672933(+)$1	271	50	90	13.5502
iiiiiiii[ccc[bb[bbmmmmbb22bb]ccciiiiiiii	chr22:20786024-20786292(-)$1	268	114	154	12.7950
iiiiii!!eeeee!!cccmmmmccc22eeeee]iiiiiii	chr2:241499977-241500266(-)$1	289	115	155	15.0612
b]ddddggggggg!!cccmmmmccc]gggggggccca[ff	chr19:1474683-1474944(-)$1	261	170	210	14.3476
[dddd"""ccc"""ddddmmmmdddd22ccc22dddd22=	chr16:87735796-87736037(-)$1	241	31	71	12.7249
[a[bb####eeeee[cccooooooccc333eeeeebb]a]	chr3:49044845-49045094(+)$1	249	60	100	13.4977
FFccc[ccc[ccc!!cccoooooocccccc]ccc333ccc	chr11:66627604-66627857(-)$1	253	137	177	14.4340
####eeeee[cccccc[ammmma]ccc22ccceeeee333	chr19:3700175-3700415(-)$1	240	103	143	13.9521
ff[bb[bb==========nnnnn==========333bb]b	chr11:63883752-63883956(-)$1	204	131	171	12.4745
f[cccggggggg"""bbmmmmbb333ggggggg22ccc22	chr11:63884815-63885070(-)$1	255	141	181	13.3828
!eeeee[a[a[ccc[cccmmmmccc]ccc]a]a]eeeee2	chrX:41193692-41193951(+)$1	259	86	126	15.3458
c[bb!!ggggggg[ddddllldddd22gggggggbb]ccc	chr11:702869-703122(-)$1	253	123	163	13.2938
FFFFF==========ccclllccc333==========fff	chr17:74379834-74380082(+)$1	248	43	83	13.8695

#otherMatches

#Seq PSSM
GACGUCGCUUGCAGGUUGGAAGACCACAGACAUGGAAGGG	chr2:241496664-241496977(-)$1	313	194	234	14.1964
UGGCGCCCAACGACCUCGUGUUCGAUGGUGGGCGGAGCCC	chr19:18547585-18547860(-)$1	275	51	91	14.8457
AUCGUUGAGGGGAGUGUUUUGGGGCCGCAGAGCUCUCAAU	chr14:103576589-103576856(+)$1	267	160	200	13.4368
AAGUUGCCCAGCGGGGGCUGAGCCAGAGCUGGGCCAGAUA	chr14:23992394-23992688(+)$1	294	34	74	16.2441
ggggcggccgccgggcaggcggcggcggcggcucugggcg	chr8:145687806-145688072(-)$1	266	131	171	11.8801
UCCCCUCUCGCCGCCACGGUCCCCGCUCGCCGCCAGGGUC	chr21:46918258-46918529(+)$1	271	104	144	12.3655
AGCGAUCCUGGGUGCCCUGCGGGGGGCUGUGCCCAGGUCC	chr2:242755982-242756245(+)$1	263	27	67	12.9145
AGCAGCCCCCGGUCUCGUCUGGGGGUCUGCGGGGCUAGCU	chr9:139249969-139250268(+)$1	299	102	142	13.6245
UGCGUGUUGGAGCCGCCUGGGCGGGGGCCGGCUGCCCGUC	chr21:46876520-46876757(+)$1	237	174	214	12.5518
GGAGAACAUGGGAAGGCUCCAGGGUUUCGAUCCUAUGCCU	chr10:103599464-103599776(-)$1	312	28	68	13.4817
GCAUCCACCUUGCUCCCUUGGCUGGGGCAGGGCUUUGCCC	chr22:42525212-42525544(+)$1	332	112	152	13.9060
GGGCAGGGCAACGUGGUCCUAUGGAAGCCCAGUGACACUG	chr1:19208254-19208539(-)$1	285	152	192	13.4827
AUCGUUGAGGGGAGUGUUUUGGGGCCGCAGAGCUCUCAAU	chr14:103576703-103576910(+)$1	207	46	86	13.4368
GGCCUUGCCAUGCCAGGGACUCCCCUUGACCGGCCGGCCC	chr4:1217183-1217505(-)$1	322	145	185	13.5430
GGCACUGCCGAGAGCGCGAACAGGGCUGGUGUGGUGGGGA	chr19:41858836-41859087(+)$1	251	132	172	12.9171
CCCCGAUCAGCAUGUGGCUCCUGGCGCUGUGUCUGGUGGG	chr17:7311435-7311676(+)$1	241	128	168	13.9118
cauggcgggcgcgggggcaaaggccgcggggccccggucg	chr19:56599527-56599789(-)$1	262	22	62	14.6479
UGCCUCCGCCAGCCCCGUUGAAGCGGAAGUGGCGUUCAGG	chr19:38876626-38876875(+)$1	249	158	198	13.8473
GGCGGCGCUGGUGGGGGGCGUGCUGCUCAUCGGCGCGGUG	chr11:637279-637544(+)$1	265	129	169	12.5197
gcccccggagccgggcgggcgucccgagccgggcccgcgg	chr2:54197730-54198054(-)$1	324	165	205	14.8604
CCGGUCAGCCAGCAGUCUCACCAGGAGCUGGUUAGCCCAG	chr14:104165093-104165399(+)$1	306	182	222	16.1062
UCCUCCCGUUCCUUGUGGGCGCGGCCGGGGGCGGGAAGAG	chr8:145754278-145754567(-)$1	289	9	49	13.7993
ccgcgcccgcggcgcgcgcgaggcgggcccggacgcccgg	chr1:234613904-234614160(-)$1	256	51	91	12.6067
GAUUCUGUGCUGAagcccuguugggcagguagugcuguca	chr9:132374593-132374847(+)$1	254	208	248	13.9703
GCGGCGCGCUGGAUGUGGGAGGCCGAGCCCAGCGAGCUGC	chr13:114144690-114144940(-)$1	250	27	67	14.7535
UGGGCUGGGGAAGGUGAUGGAGUAGCCUUCUCUUCAGGCU	chr14:23993688-23993910(+)$1	222	156	196	11.8431
ACUCCGCACACCGGGGUGACUUCUCAGGUUCUCGGGGUGG	chr16:90015880-90016144(+)$1	264	65	105	14.2686
GAGCAGCCGCGGCCAGCUCAGAGCUGCCCUGGCCCCGCCC	chr20:32251363-32251635(-)$1	272	58	98	12.0835
GCCUCAGAGCCAUGGGCUGAGACAGACCCUUCUCUGGAGA	chr19:2811919-2812166(+)$1	247	196	236	13.5615
CCAGGGCUGGCUGGAGCCUGUGAGGAUCCCAGAGCCCUGA	chr4:1217059-1217312(-)$1	253	201	241	13.7647
gcggggggcggcgggguccggggacgccgccgccgccgcc	chr19:460515-460754(-)$1	239	87	127	12.6843
gccagggggcggcuccgcagaggcgagcgccgccgcgccc	chr15:51386772-51387033(+)$1	261	165	205	14.8873
gggcggcucgguggcggcggccgcugcggccauggugagc	chr21:47565650-47565867(-)$1	217	102	142	12.4567
UGGCUGCCUCUUUCAGACCCAGAUGCUGAGAGAUGGGGCU	chr16:89975268-89975496(+)$1	228	36	76	11.8405
ggcggcggcggcggcggcgCGCGCCAUCCGCUCGCCGCUG	chr2:231902554-231902863(+)$1	309	4	44	14.5184
GGGCCGCGCGGUGGGGUGGGGGUGCUCCCGCCGCGGGUAG	chr21:46929292-46929520(-)$1	228	155	195	17.6055
GGCGGGAGUCAGGAUGCUCCUGAGCCCUUCCUUGCUCUCC	chr12:132401794-132402059(+)$1	265	118	158	13.1627
AUGGAGCAAGUGGAGAUCCUGAGGAAAUUCAUCCAGAGGG	chr7:77166704-77166994(+)$1	290	159	199	13.3450
GCGACAGGCCUUGAAACUCCACAGCAGCACAGGCCCCGUC	chr16:448115-448361(+)$1	246	150	190	12.6655
uuuuggcuccuGCUGGGAUUUAUCAGCCAUCAGUCCACCU	chr16:15031873-15032176(+)$1	303	231	271	11.8712
GCUGUCGUGCAGCUGCACCACGGGGGGCUGCAAGGCGGCC	chr21:46929119-46929371(-)$1	252	51	91	13.9139
CUGCGGGAGCCUCAGGCUGGAAGGCAGAGGACAGUGAGAG	chr11:63766288-63766531(+)$1	243	40	80	13.8477
ggcggcggcggcggcggcgCGCGCCAUCCGCUCGCCGCUG	chr2:231902453-231902696(+)$1	243	105	145	14.8009
UCCCUACUGCCUgggcgcggggcggggccugggcgcgggg	chr11:111636970-111637244(-)$1	274	83	123	14.5951
CUCUUGGAAGCACUCGGUCUCCACCAUCUGCUGAGGAGCA	chr5:176867878-176868115(-)$1	237	169	209	14.0112
cggccccggccccggcccccAGGCCAGGCAGUGGCGGCCA	chr22:31672662-31672933(+)$1	271	50	90	13.5502
GGCGGGGCUAGGACGCGCAGCAGCUCUGGCCUGUCUCGUC	chr22:20786024-20786292(-)$1	268	114	154	12.7950
GGAGGUACGGGCGAGGCGGCCCCGCGGCGCCCAGCUUCUG	chr2:241499977-241500266(-)$1	289	115	155	15.0612
UGCUGUACUGUGAUUCUGUCGUCAGCUCACAGUGGCCGUG	chr19:1474683-1474944(-)$1	261	170	210	14.3476
ACGGGCCAGGCACUGCCCUGCAGGGCCCGCCCCCCUGCCC	chr16:87735796-87736037(-)$1	241	31	71	12.7249
GGAGCUUAUACUCCUCCCAGUGACGGGUCUGGAGUGCGUG	chr3:49044845-49045094(+)$1	249	60	100	13.4977
GCCCUCUGCCCCACGAGGCUCAUCCCUUGGAGCACACAGG	chr11:66627604-66627857(-)$1	253	137	177	14.4340
AGAGCGGGGCGGCGGCAGGUAACGGCCCGGCCUCCCGGGG	chr19:3700175-3700415(-)$1	240	103	143	13.9521
Augguggccguggucaucacaacgguggccgugacagugg	chr11:63883752-63883956(-)$1	204	131	171	12.4745
CUGGCCGUGGUCUUGGCAGCCGCAUUGGCCACGCCGCCCU	chr11:63884815-63885070(-)$1	255	141	181	13.3828
GCUUUUGUGUGUGCGUGCGCAGGCGGGCGGAGGGGGAGGA	chrX:41193692-41193951(+)$1	259	86	126	15.3458
AGGGCCAGGCUGGCGGCCAGCGGCCUCUCAGCCUCUGUCA	chr11:702869-703122(-)$1	253	123	163	13.2938
UCCGGCGCCCCUUCUUCACGCUGAGCCAGAGGGGGCGGGG	chr17:74379834-74380082(+)$1	248	43	83	13.8695

#DB
..(((.(.(((..((((....)))).))).))))...)))	chr2:241496664-241496977(-)$1	1	194	234	14.1964
(..(((((....((((((....))).))))))))..))).	chr19:18547585-18547860(-)$1	1	51	91	14.8457
(.(((((((((...(((.........)))...))))))))	chr14:103576589-103576856(+)$1	1	160	200	13.4368
..((((((((((...(((...)))...)))))))..))).	chr14:23992394-23992688(+)$1	1	34	74	16.2441
(((((.(((((((.........))))))).))))))))).	chr8:145687806-145688072(-)$1	1	131	171	11.8801
..((((...((.((..(((...)))...)).)).))))..	chr21:46918258-46918529(+)$1	1	104	144	12.3655
((.((.((((((((((((....)))))...))))))))).	chr2:242755982-242756245(+)$1	1	27	67	12.9145
((((((((((((.(((......))).))).)))))).)))	chr9:139249969-139250268(+)$1	1	102	142	13.6245
.(((....((((((((((......))).))))).))))).	chr21:46876520-46876757(+)$1	1	174	214	12.5518
((....((((((((((((....)))))...)))))))...	chr10:103599464-103599776(-)$1	1	28	68	13.4817
(((....((((((.(((......)))))))))...)))..	chr22:42525212-42525544(+)$1	1	112	152	13.9060
((((((....((.((((((...)))...)))))....)))	chr1:19208254-19208539(-)$1	1	152	192	13.4827
(.(((((((((...(((.........)))...))))))))	chr14:103576703-103576910(+)$1	1	46	86	13.4368
((((..(((...(.((((....)))).)...))).)))))	chr4:1217183-1217505(-)$1	1	145	185	13.5430
(.(((.(((...(((.(.....).))))))))).))))).	chr19:41858836-41859087(+)$1	1	132	172	12.9171
(((((((..(((.(((.(....).))))))))).)).)))	chr17:7311435-7311676(+)$1	1	128	168	13.9118
(...(.((((.(.(.(((....))).).).)))))))).)	chr19:56599527-56599789(-)$1	1	22	62	14.6479
(((((.(((((...((((....))))...)))))....))	chr19:38876626-38876875(+)$1	1	158	198	13.8473
))).(((((((((((.((....)).))))))))))).(((	chr11:637279-637544(+)$1	1	129	169	12.5197
((((((((.(((.((((((...)))..))).)))))).))	chr2:54197730-54198054(-)$1	1	165	205	14.8604
(((((.(((((((..(((....))).))))))).)))..)	chr14:104165093-104165399(+)$1	1	182	222	16.1062
((.((((((((((.((.(...).)).)))))))))).)).	chr8:145754278-145754567(-)$1	1	9	49	13.7993
(((.(((((.(((.(((.....))).))))))..)).)))	chr1:234613904-234614160(-)$1	1	51	91	12.6067
(...(.((((((..((((....))))...)))))).)...	chr9:132374593-132374847(+)$1	1	208	248	13.9703
(((((.((((((...(((....)))...)))))).)))))	chr13:114144690-114144940(-)$1	1	27	67	14.7535
.((((((((((((((.........)))))))))...))))	chr14:23993688-23993910(+)$1	1	156	196	11.8431
((((((...(((.(((......))).)))...))))))))	chr16:90015880-90016144(+)$1	1	65	105	14.2686
(.(..((((.(((.((((...))))))).)))))))))..	chr20:32251363-32251635(-)$1	1	58	98	12.0835
(((((((((....((((((...))).)))..)))))....	chr19:2811919-2812166(+)$1	1	196	236	13.5615
.(((((((....(((.(((...))).)))...))))))))	chr4:1217059-1217312(-)$1	1	201	241	13.7647
((((..((((((((.(((....))).)))))))).)))))	chr19:460515-460754(-)$1	1	87	127	12.6843
(....(.((((((.((((....))).).)))))).)...)	chr15:51386772-51387033(+)$1	1	165	205	14.8873
(..((.(..(((.(((((....))))).)))..).))..)	chr21:47565650-47565867(-)$1	1	102	142	12.4567
(((((.(.((((((((.(......))))))))).).))).	chr16:89975268-89975496(+)$1	1	36	76	11.8405
((((((((((((((.(((....)))..)))).))))))).	chr2:231902554-231902863(+)$1	1	4	44	14.5184
..(((.((((((((((((....))).))))))))))))..	chr21:46929292-46929520(-)$1	1	155	195	17.6055
((.((((((.((((.(((....)))...)))).)))))))	chr12:132401794-132402059(+)$1	1	118	158	13.1627
.((((.(...(((((((((...)))...)).))))...).	chr7:77166704-77166994(+)$1	1	159	199	13.3450
(((...(((((((...((....))...)).))))).))).	chr16:448115-448361(+)$1	1	150	190	12.6655
...(((((...(((((......)))))....)).)))...	chr16:15031873-15032176(+)$1	1	231	271	11.8712
((((((.(((((((.(.(....)).))))))).)))))).	chr21:46929119-46929371(-)$1	1	51	91	13.9139
((.((....((((..(((....))).))))....))..))	chr11:63766288-63766531(+)$1	1	40	80	13.8477
((((((((((((((.(((....)))..)))).))))))).	chr2:231902453-231902696(+)$1	1	105	145	14.8009
((((...(((((((((.(......).))))))))).))))	chr11:111636970-111637244(-)$1	1	83	123	14.5951
(((((...((((...(((....)))...)))).)))))).	chr5:176867878-176868115(-)$1	1	169	209	14.0112
(.(((.(.(((..((((....)))).))).).))).))))	chr22:31672662-31672933(+)$1	1	50	90	13.5502
((((((((.(((.((.((....))..)).)))))))))))	chr22:20786024-20786292(-)$1	1	114	154	12.7950
((((((..(((((..(((....)))..))))).)))))))	chr2:241499977-241500266(-)$1	1	115	155	15.0612
).))))(((((((..(((....))).)))))))((((.((	chr19:1474683-1474944(-)$1	1	170	210	14.3476
.((((...(((...((((....))))..)))..))))..)	chr16:87735796-87736037(-)$1	1	31	71	12.7249
.(.((....(((((.(((......)))...))))))).).	chr3:49044845-49045094(+)$1	1	60	100	13.4977
(((((.(((.(((..(((......)))))).)))...)))	chr11:66627604-66627857(-)$1	1	137	177	14.4340
....(((((.((((((.(....).)))..))))))))...	chr19:3700175-3700415(-)$1	1	103	143	13.9521
((.((.((((((((((((.....))))))))))...)).)	chr11:63883752-63883956(-)$1	1	131	171	12.4745
(.((((((((((...((....))...)))))))..)))..	chr11:63884815-63885070(-)$1	1	141	181	13.3828
.(((((.(.(.(((.(((....))).))).).).))))).	chrX:41193692-41193951(+)$1	1	86	126	15.3458
(.((..(((((((.((((...))))..))))))))).)))	chr11:702869-703122(-)$1	1	123	163	13.2938
((((((((((((((((((...)))...))))))))))(((	chr17:74379834-74380082(+)$1	1	43	83	13.8695

#PSSM
e : 0.17	c : 0.15	f : 0.12	! : 0.08	i : 0.06	b : 0.06	[ : 0.06	d : 0.05	g : 0.05	a : 0.03	" : 0.03	F : 0.03	G : 0.01	: : 0.01	# : 0.01	
e : 0.13	[ : 0.12	c : 0.10	f : 0.10	! : 0.08	d : 0.08	i : 0.06	" : 0.06	g : 0.06	b : 0.05	# : 0.03	F : 0.03	] : 0.01	a : 0.01	
c : 0.25	e : 0.13	[ : 0.10	i : 0.08	d : 0.08	f : 0.06	# : 0.05	" : 0.05	g : 0.05	! : 0.03	b : 0.03	a : 0.01	F : 0.01	
c : 0.20	e : 0.15	b : 0.12	i : 0.08	f : 0.08	d : 0.06	# : 0.06	g : 0.06	" : 0.05	: : 0.01	= : 0.01	[ : 0.01	! : 0.01	F : 0.01	
c : 0.20	e : 0.12	b : 0.10	i : 0.08	f : 0.08	d : 0.06	# : 0.06	! : 0.06	g : 0.06	a : 0.03	= : 0.03	" : 0.03	F : 0.01	
[ : 0.27	e : 0.10	g : 0.08	# : 0.08	i : 0.06	f : 0.06	" : 0.06	d : 0.05	! : 0.05	c : 0.05	= : 0.05	b : 0.01	a : 0.01	
g : 0.18	c : 0.10	a : 0.08	e : 0.08	i : 0.08	" : 0.08	# : 0.08	f : 0.06	= : 0.05	[ : 0.05	d : 0.03	b : 0.03	h : 0.01	! : 0.01	
g : 0.20	i : 0.10	f : 0.10	e : 0.08	" : 0.08	c : 0.08	# : 0.06	[ : 0.05	! : 0.05	= : 0.05	d : 0.03	b : 0.03	h : 0.01	a : 0.01	
g : 0.18	c : 0.12	f : 0.10	# : 0.08	i : 0.08	e : 0.08	" : 0.06	= : 0.06	d : 0.05	[ : 0.05	! : 0.03	h : 0.03	b : 0.01	
g : 0.18	c : 0.15	i : 0.08	[ : 0.08	# : 0.06	f : 0.06	" : 0.06	e : 0.06	= : 0.06	d : 0.05	b : 0.03	h : 0.03	a : 0.01	
c : 0.22	g : 0.15	d : 0.10	i : 0.08	e : 0.08	f : 0.06	= : 0.06	# : 0.05	" : 0.05	b : 0.03	[ : 0.03	h : 0.03	
c : 0.18	g : 0.15	" : 0.10	d : 0.10	e : 0.06	f : 0.06	= : 0.06	# : 0.05	i : 0.05	! : 0.03	b : 0.03	h : 0.03	[ : 0.01	a : 0.01	
c : 0.13	" : 0.13	[ : 0.13	g : 0.12	d : 0.08	e : 0.06	= : 0.06	! : 0.05	i : 0.05	b : 0.03	f : 0.03	h : 0.03	a : 0.01	# : 0.01	
c : 0.18	" : 0.15	[ : 0.12	d : 0.10	e : 0.10	! : 0.10	= : 0.05	i : 0.05	b : 0.03	h : 0.03	r : 0.01	a : 0.01	g : 0.01	
c : 0.24	d : 0.13	[ : 0.13	! : 0.10	" : 0.08	e : 0.08	= : 0.05	b : 0.05	i : 0.05	r : 0.01	a : 0.01	h : 0.01	
c : 0.53	d : 0.13	e : 0.06	[ : 0.06	b : 0.05	r : 0.03	! : 0.01	h : 0.01	" : 0.01	a : 0.01	i : 0.01	= : 0.01	
c : 0.51	d : 0.13	[ : 0.10	b : 0.06	e : 0.05	o : 0.05	r : 0.03	a : 0.01	= : 0.01	
c : 0.44	d : 0.10	a : 0.10	r : 0.06	o : 0.06	m : 0.05	e : 0.05	b : 0.05	n : 0.03	= : 0.01	
m : 0.53	o : 0.15	c : 0.10	l : 0.08	r : 0.06	n : 0.05	
m : 0.53	l : 0.18	o : 0.15	r : 0.06	n : 0.05	
m : 0.53	l : 0.18	o : 0.15	r : 0.06	n : 0.05	
m : 0.48	o : 0.15	l : 0.10	d : 0.06	r : 0.06	n : 0.05	c : 0.03	a : 0.01	b : 0.01	
c : 0.44	d : 0.13	o : 0.10	e : 0.06	a : 0.06	b : 0.06	r : 0.05	g : 0.01	] : 0.01	n : 0.01	
c : 0.46	d : 0.13	o : 0.08	e : 0.06	b : 0.06	r : 0.05	] : 0.05	g : 0.01	a : 0.01	= : 0.01	3 : 0.01	
c : 0.53	d : 0.13	3 : 0.06	e : 0.06	r : 0.03	] : 0.03	a : 0.03	g : 0.01	b : 0.01	i : 0.01	2 : 0.01	= : 0.01	
] : 0.31	3 : 0.17	c : 0.13	2 : 0.10	e : 0.06	d : 0.06	r : 0.03	g : 0.03	= : 0.03	i : 0.01	h : 0.01	
c : 0.31	3 : 0.18	2 : 0.10	g : 0.08	e : 0.06	= : 0.05	i : 0.05	a : 0.03	h : 0.03	f : 0.01	] : 0.01	d : 0.01	b : 0.01	
c : 0.27	3 : 0.18	g : 0.12	] : 0.06	= : 0.06	i : 0.05	d : 0.05	h : 0.03	b : 0.03	2 : 0.03	f : 0.01	a : 0.01	4 : 0.01	e : 0.01	
c : 0.31	g : 0.12	3 : 0.10	d : 0.08	= : 0.06	b : 0.05	f : 0.05	i : 0.05	e : 0.03	] : 0.03	h : 0.03	a : 0.01	4 : 0.01	2 : 0.01	
c : 0.17	3 : 0.13	] : 0.12	g : 0.10	d : 0.10	e : 0.06	f : 0.06	= : 0.06	i : 0.05	b : 0.03	h : 0.03	2 : 0.01	4 : 0.01	
g : 0.13	c : 0.13	e : 0.10	d : 0.10	3 : 0.08	f : 0.08	i : 0.06	] : 0.06	= : 0.06	a : 0.05	h : 0.03	4 : 0.03	2 : 0.01	
c : 0.15	g : 0.13	e : 0.12	f : 0.08	d : 0.08	3 : 0.06	i : 0.06	= : 0.06	] : 0.06	b : 0.05	h : 0.03	2 : 0.03	4 : 0.01	
g : 0.17	c : 0.12	e : 0.12	i : 0.12	f : 0.08	= : 0.06	] : 0.06	b : 0.05	d : 0.05	2 : 0.05	h : 0.03	3 : 0.01	4 : 0.01	a : 0.01	
] : 0.13	f : 0.13	i : 0.12	g : 0.12	c : 0.10	e : 0.10	3 : 0.05	d : 0.05	= : 0.05	4 : 0.03	2 : 0.03	a : 0.03	h : 0.01	
i : 0.12	f : 0.10	e : 0.10	3 : 0.08	g : 0.08	b : 0.08	] : 0.08	c : 0.08	2 : 0.05	d : 0.05	a : 0.05	= : 0.05	4 : 0.03	
c : 0.15	b : 0.12	e : 0.12	3 : 0.08	i : 0.08	g : 0.08	f : 0.08	] : 0.08	= : 0.05	2 : 0.03	d : 0.03	4 : 0.03	a : 0.01	
c : 0.22	e : 0.15	i : 0.08	g : 0.08	] : 0.08	3 : 0.06	f : 0.06	4 : 0.05	b : 0.05	d : 0.03	a : 0.03	: : 0.01	2 : 0.01	= : 0.01	
c : 0.24	e : 0.15	f : 0.12	i : 0.08	4 : 0.06	g : 0.06	2 : 0.06	3 : 0.06	b : 0.05	] : 0.03	d : 0.01	[ : 0.01	
c : 0.17	e : 0.15	f : 0.13	i : 0.10	3 : 0.10	2 : 0.08	g : 0.08	4 : 0.05	b : 0.03	] : 0.03	a : 0.03	
] : 0.17	e : 0.13	3 : 0.10	2 : 0.10	f : 0.08	i : 0.08	c : 0.08	4 : 0.05	b : 0.05	g : 0.03	d : 0.01	F : 0.01	a : 0.01	: : 0.01	= : 0.01	

#score	794.3094487840049
#seq	58
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF821EXR_HNRNPUL1_transcript_m3_run1.txt

#BEAR
========ppppppp=======	chr19:575529-575774(+)$1	245	104	126	15.1826
:gggggggpppppppggggggg	chr19:1411653-1411898(+)$1	245	1	23	14.2883
ccc[ddddpppppppddddccc	chr16:85651895-85652144(+)$1	249	149	171	14.7807
eeee[cccpppppppccc]eee	chr16:85666910-85667172(+)$1	262	213	235	14.5639
#eeeeerrrrrrrrreeeeebb	chr1:76255105-76255329(+)$1	224	26	48	10.4002
eee!!cccpppppppccc22ee	chr22:50018485-50018711(-)$1	226	2	24	14.5863
!eeeeebbpppppppbb]eeee	chr22:49993486-49993741(-)$1	255	140	162	13.2690
$$dddd[apppppppa]dddd3	chr2:27273605-27273815(+)$1	210	80	102	14.1129
eeffffffpppppppffffff:	chr19:1409991-1410222(+)$1	231	118	140	12.0678
#bb[ddddpppppppddddbbh	chr11:65193628-65193882(+)$1	254	138	160	13.8175
iiieeeeepppppppeeeeeff	chrX:135961284-135961491(-)$1	207	151	173	14.8094
iiiiiiiipppppppiiiiiii	chr16:89033145-89033382(-)$1	237	172	194	15.2648
iii!!cccpppppppccc22ii	chr22:49957865-49958133(-)$1	268	187	209	15.4778
cgggggggpppppppggggggg	chr19:3698783-3699034(-)$1	251	192	214	15.1884
ddd!!cccpppppppcccdddd	chr16:31198641-31198883(+)$1	242	115	137	14.3905
$$dddd[apppppppa]dddd3	chr2:27273615-27273828(+)$1	213	70	92	14.1129
========rrrrrrrrr=====	chr16:31199378-31199623(+)$1	245	74	96	11.0892
g"""ddddpppppppdddd333	chr2:234197459-234197676(+)$1	217	51	73	14.9317
dddd[cccpppppppccc22dd	chr5:179046404-179046676(-)$1	272	212	234	14.1170
gggeeeeepppppppeeeee]g	chrX:135961303-135961532(-)$1	229	192	214	15.0631
[cccddddpppppppdddd]cc	chr19:1411020-1411292(+)$1	272	44	66	14.9560
:dddd!!apppppppa22dddd	chr22:17091073-17091340(+)$1	267	182	204	12.3380
gggeeeeepppppppeeeee]g	chrX:135961295-135961503(-)$1	208	163	185	15.0631
hh!!ddddpppppppdddd777	chr17:2232322-2232587(-)$1	265	99	121	12.8938
ddd!!cccpppppppcccdddd	chr16:31198588-31198841(+)$1	253	168	190	14.3905
c[bbddddpppppppdddd]bb	chr11:3067409-3067664(-)$1	255	120	142	13.9991
$ccc[cccpppppppccc]ccc	chr7:91762799-91763068(-)$1	269	160	182	14.8035
hhhhhhhhppppppphhhhhhh	chr7:921233-921487(+)$1	254	176	198	13.3257
hhhhhhhhppppppphhhhhhh	chr1:76255088-76255291(+)$1	203	27	49	13.3257
gggeeeeepppppppeeeee]g	chrX:135961291-135961495(-)$1	204	155	177	15.0631
ddffffffpppppppffffff2	chr11:65195554-65195791(+)$1	237	57	79	12.7771
$$dddd[apppppppa]dddd3	chr2:27273628-27273837(+)$1	209	57	79	14.1129
fff!!cccpppppppccc22ff	chr22:50018600-50018914(-)$1	314	205	227	14.5941
fff!!cccpppppppccc22ff	chr22:50027944-50028194(-)$1	250	22	44	14.5941
ggggggggpppppppggggggg	chr22:49991350-49991635(-)$1	285	143	165	15.2651
gggeeeeepppppppeeeee22	chr17:16342999-16343322(+)$1	323	293	315	14.6176
[bb[ddddpppppppdddd]bb	chr22:50010501-50010784(-)$1	283	237	259	14.2567
""bb[cccpppppppccc]bb6	chr21:45563746-45564039(+)$1	293	197	219	13.5815
:gggggggpppppppggggggg	chr11:65193577-65193814(+)$1	237	78	100	14.2883
iiieeeeepppppppeeeee::	chrX:135961255-135961484(-)$1	229	144	166	13.0050
ffffddddpppppppdddd]ff	chr14:21860207-21860507(-)$1	300	132	154	14.2995
!!ddddrrrrrrrrrdddd22c	chr11:93454869-93455115(+)$1	246	5	27	10.9827
hhhhhhhhppppppphhhhhhh	chr22:50011824-50012082(-)$1	258	32	54	13.3257
gg!!ddddpppppppddddggg	chr4:67445-67689(+)$1	244	199	221	15.2895
#gggggggpppppppggggggg	chr5:40832668-40832873(-)$1	205	89	111	15.2915
bb[eeeeepppppppeeeee]b	chr22:49961775-49962082(-)$1	307	22	44	14.1070
bgggggggpppppppggggggg	chr6:133136385-133136611(+)$1	226	92	114	14.9881
Jgggggggpppppppggggggg	chr1:28907227-28907486(-)$1	259	15	37	13.8104
g[ddddrrrrrrrrrdddd]gg	chr11:65191946-65192191(+)$1	245	84	106	11.2633
Heeeeerrrrrrrrreeeeeee	chr16:89023760-89024004(-)$1	244	151	173	9.9823
hhhhhhhhppppppphhhhhhh	chr1:76255091-76255305(+)$1	214	24	46	13.3257
ffff[cccpppppppccc22ff	chr4:1237843-1238118(-)$1	275	57	79	14.3358
gg[eeeeepppppppeeeeegg	chr22:50011586-50011836(-)$1	250	28	50	15.0343
hhhhhhhhppppppphhhhhhh	chr3:186502633-186502846(+)$1	213	99	121	13.3257
""ddddrrrrrrrrrdddd444	chr2:203141070-203141335(+)$1	265	130	152	10.7669
gggggggrrrrrrrrrgggggg	chr16:31199251-31199476(+)$1	225	202	224	11.3647
!!ffffffpppppppffffff]	chr22:50013563-50013832(-)$1	269	52	74	13.6149
===[ddddpppppppdddd22=	chr3:187459396-187459664(-)$1	268	232	254	15.0787

#otherMatches

#Seq PSSM
GCAGCCUUAUCCUGCGGGGCUG	chr19:575529-575774(+)$1	245	104	126	15.1826
CGCGCAGCGUGCCCAGCUGUGC	chr19:1411653-1411898(+)$1	245	1	23	14.2883
UGUUACUGUGUCGAUCAGUGCA	chr16:85651895-85652144(+)$1	249	149	171	14.7807
AGGAUGCGGGCCGCACGCCUCC	chr16:85666910-85667172(+)$1	262	213	235	14.5639
AGUUUUGUUACAAGUGAAGCUG	chr1:76255105-76255329(+)$1	224	26	48	10.4002
CACAGCAGAAGGUUCCUGGAGU	chr22:50018485-50018711(-)$1	226	2	24	14.5863
AGGAGGCCUCCUGCCGGCCCUC	chr22:49993486-49993741(-)$1	255	140	162	13.2690
guggauagggcguggcaauccu	chr2:27273605-27273815(+)$1	210	80	102	14.1129
CUGCUUUUGAGUCUGAGAAGUC	chr19:1409991-1410222(+)$1	231	118	140	12.0678
GGGAUGAUGCAAACAAUUACUG	chr11:65193628-65193882(+)$1	254	138	160	13.8175
UUUGGUUAUUUCAUUUGACCUA	chrX:135961284-135961491(-)$1	207	151	173	14.8094
GGCUCUGCAAGCCAGGCAGGGC	chr16:89033145-89033382(-)$1	237	172	194	15.2648
UUUGGCAAAACUGAGUUGGGAG	chr22:49957865-49958133(-)$1	268	187	209	15.4778
UUCUGAAUGUUUAAAAUUCAGA	chr19:3698783-3699034(-)$1	251	192	214	15.1884
GCUCAUGGGAAAUAACCAGGUC	chr16:31198641-31198883(+)$1	242	115	137	14.3905
guggauagggcguggcaauccu	chr2:27273615-27273828(+)$1	213	70	92	14.1129
UGCCUAGAAUUUUCUCCUCUGG	chr16:31199378-31199623(+)$1	245	74	96	11.0892
GCUUAGUCACAAAGGGAUUUGA	chr2:234197459-234197676(+)$1	217	51	73	14.9317
GGGCUUGUGAUGUUAAUAUUGC	chr5:179046404-179046676(-)$1	272	212	234	14.1170
UUUGGUUAUUUCAUUUGACCUA	chrX:135961303-135961532(-)$1	229	192	214	15.0631
ACCUGUGCAGAGUGAGCACAAG	chr19:1411020-1411292(+)$1	272	44	66	14.9560
UGUUGUGCUUGUGCUGAUCAAC	chr22:17091073-17091340(+)$1	267	182	204	12.3380
UUUGGUUAUUUCAUUUGACCUA	chrX:135961295-135961503(-)$1	208	163	185	15.0631
UUUAUUCAAAAUGUCUGAACCU	chr17:2232322-2232587(-)$1	265	99	121	12.8938
GCUCAUGGGAAAUAACCAGGUC	chr16:31198588-31198841(+)$1	253	168	190	14.3905
AAGCGGGCCUGGUACGUCCAGC	chr11:3067409-3067664(-)$1	255	120	142	13.9991
UCUGAUGCUAAUAAUGUAACAG	chr7:91762799-91763068(-)$1	269	160	182	14.8035
cggguaccaagcauggguaccu	chr7:921233-921487(+)$1	254	176	198	13.3257
CAGGAUUUGGUCAAAAAGUUUU	chr1:76255088-76255291(+)$1	203	27	49	13.3257
UUUGGUUAUUUCAUUUGACCUA	chrX:135961291-135961495(-)$1	204	155	177	15.0631
UGAAUUCAGACUUUGUGAAUUU	chr11:65195554-65195791(+)$1	237	57	79	12.7771
guggauagggcguggcaauccu	chr2:27273628-27273837(+)$1	209	57	79	14.1129
CACAGCAGAAGGUUCCUGGAGU	chr22:50018600-50018914(-)$1	314	205	227	14.5941
acaauguugccaaagagcugug	chr22:50027944-50028194(-)$1	250	22	44	14.5941
CACAAUGCCUUGUAAGUGUUGU	chr22:49991350-49991635(-)$1	285	143	165	15.2651
CAGGUAGGGUCUAGAUCUGCGG	chr17:16342999-16343322(+)$1	323	293	315	14.6176
ACUGGGACAGGGACAGUCUGAG	chr22:50010501-50010784(-)$1	283	237	259	14.2567
AGGCACUGGAAUGAGUAGAGCA	chr21:45563746-45564039(+)$1	293	197	219	13.5815
UUAAAAAUCAUGGUUAUUUUUA	chr11:65193577-65193814(+)$1	237	78	100	14.2883
UUUGGUUAUUUCAUUUGACCUA	chrX:135961255-135961484(-)$1	229	144	166	13.0050
AGGUAGGGAGUUUUACCCUAAC	chr14:21860207-21860507(-)$1	300	132	154	14.2995
UGUGUUUAUAAAGAUAACAGCU	chr11:93454869-93455115(+)$1	246	5	27	10.9827
CUCAGCCCUGGAUGUGGGUUGA	chr22:50011824-50012082(-)$1	258	32	54	13.3257
auaaaguauuucaauuacuaua	chr4:67445-67689(+)$1	244	199	221	15.2895
GAUUUCAGCAUUUAACUGAGAU	chr5:40832668-40832873(-)$1	205	89	111	15.2915
GAAUCUGAACACGGAUCAGAGU	chr22:49961775-49962082(-)$1	307	22	44	14.1070
CUUCACUCCUUUUAUGAGUGAA	chr6:133136385-133136611(+)$1	226	92	114	14.9881
UUGUUGUAACUGAUCUGCAACA	chr1:28907227-28907486(-)$1	259	15	37	13.8104
UGAAGAGCUGUUUAAUUUUAAA	chr11:65191946-65192191(+)$1	245	84	106	11.2633
GCAAGCUCCGACCCCGUUUGUG	chr16:89023760-89024004(-)$1	244	151	173	9.9823
CAGGAUUUGGUCAAAAAGUUUU	chr1:76255091-76255305(+)$1	214	24	46	13.3257
GUCCCUCUCCAGACCAGAAUGG	chr4:1237843-1238118(-)$1	275	57	79	14.3358
UGUGGGCUGAGAAGGGGCUCCG	chr22:50011586-50011836(-)$1	250	28	50	15.0343
GUAUCCUACUUUUUUUAGGGUA	chr3:186502633-186502846(+)$1	213	99	121	13.3257
UCUGACUCAAUAUUCGUCACUA	chr2:203141070-203141335(+)$1	265	130	152	10.7669
GCCUAGAAUUUUCUCCUCUGGG	chr16:31199251-31199476(+)$1	225	202	224	11.3647
aggcucuuuuauguuaagggca	chr22:50013563-50013832(-)$1	269	52	74	13.6149
GCGAGCACAGCGAGGGUGCAGC	chr3:187459396-187459664(-)$1	268	232	254	15.0787

#DB
((((((((.......)))))))	chr19:575529-575774(+)$1	1	104	126	15.1826
.(((((((.......)))))))	chr19:1411653-1411898(+)$1	1	1	23	14.2883
(((.((((.......)))))))	chr16:85651895-85652144(+)$1	1	149	171	14.7807
((((.(((.......))).)))	chr16:85666910-85667172(+)$1	1	213	235	14.5639
.(((((.........)))))))	chr1:76255105-76255329(+)$1	1	26	48	10.4002
(((..(((.......)))..))	chr22:50018485-50018711(-)$1	1	2	24	14.5863
.(((((((.......)).))))	chr22:49993486-49993741(-)$1	1	140	162	13.2690
..((((.(.......).)))).	chr2:27273605-27273815(+)$1	1	80	102	14.1129
))((((((.......)))))).	chr19:1409991-1410222(+)$1	1	118	140	12.0678
.((.((((.......)))))))	chr11:65193628-65193882(+)$1	1	138	160	13.8175
)))(((((.......)))))((	chrX:135961284-135961491(-)$1	1	151	173	14.8094
((((((((.......)))))))	chr16:89033145-89033382(-)$1	1	172	194	15.2648
(((..(((.......)))..))	chr22:49957865-49958133(-)$1	1	187	209	15.4778
)(((((((.......)))))))	chr19:3698783-3699034(-)$1	1	192	214	15.1884
(((..(((.......)))))))	chr16:31198641-31198883(+)$1	1	115	137	14.3905
..((((.(.......).)))).	chr2:27273615-27273828(+)$1	1	70	92	14.1129
((((((((.........)))))	chr16:31199378-31199623(+)$1	1	74	96	11.0892
(...((((.......))))...	chr2:234197459-234197676(+)$1	1	51	73	14.9317
((((.(((.......)))..))	chr5:179046404-179046676(-)$1	1	212	234	14.1170
((((((((.......))))).)	chrX:135961303-135961532(-)$1	1	192	214	15.0631
.(((((((.......)))).))	chr19:1411020-1411292(+)$1	1	44	66	14.9560
.((((..(.......)..))))	chr22:17091073-17091340(+)$1	1	182	204	12.3380
((((((((.......))))).)	chrX:135961295-135961503(-)$1	1	163	185	15.0631
((..((((.......))))...	chr17:2232322-2232587(-)$1	1	99	121	12.8938
(((..(((.......)))))))	chr16:31198588-31198841(+)$1	1	168	190	14.3905
(.((((((.......)))).))	chr11:3067409-3067664(-)$1	1	120	142	13.9991
.(((.(((.......))).)))	chr7:91762799-91763068(-)$1	1	160	182	14.8035
((((((((.......)))))))	chr7:921233-921487(+)$1	1	176	198	13.3257
((((((((.......)))))))	chr1:76255088-76255291(+)$1	1	27	49	13.3257
((((((((.......))))).)	chrX:135961291-135961495(-)$1	1	155	177	15.0631
((((((((.......)))))).	chr11:65195554-65195791(+)$1	1	57	79	12.7771
..((((.(.......).)))).	chr2:27273628-27273837(+)$1	1	57	79	14.1129
(((..(((.......)))..))	chr22:50018600-50018914(-)$1	1	205	227	14.5941
(((..(((.......)))..))	chr22:50027944-50028194(-)$1	1	22	44	14.5941
)(((((((.......)))))))	chr22:49991350-49991635(-)$1	1	143	165	15.2651
((((((((.......)))))..	chr17:16342999-16343322(+)$1	1	293	315	14.6176
.((.((((.......)))).))	chr22:50010501-50010784(-)$1	1	237	259	14.2567
..((.(((.......))).)).	chr21:45563746-45564039(+)$1	1	197	219	13.5815
.(((((((.......)))))))	chr11:65193577-65193814(+)$1	1	78	100	14.2883
)))(((((.......)))))..	chrX:135961255-135961484(-)$1	1	144	166	13.0050
((((((((.......)))).))	chr14:21860207-21860507(-)$1	1	132	154	14.2995
..((((.........))))..)	chr11:93454869-93455115(+)$1	1	5	27	10.9827
((((((((.......)))))))	chr22:50011824-50012082(-)$1	1	32	54	13.3257
((..((((.......)))))))	chr4:67445-67689(+)$1	1	199	221	15.2895
.(((((((.......)))))))	chr5:40832668-40832873(-)$1	1	89	111	15.2915
((.(((((.......))))).)	chr22:49961775-49962082(-)$1	1	22	44	14.1070
)(((((((.......)))))))	chr6:133136385-133136611(+)$1	1	92	114	14.9881
((((((((.......)))))))	chr1:28907227-28907486(-)$1	1	15	37	13.8104
(.((((.........)))).))	chr11:65191946-65192191(+)$1	1	84	106	11.2633
((((((.........)))))((	chr16:89023760-89024004(-)$1	1	151	173	9.9823
((((((((.......)))))))	chr1:76255091-76255305(+)$1	1	24	46	13.3257
((((.(((.......)))..))	chr4:1237843-1238118(-)$1	1	57	79	14.3358
((.(((((.......)))))))	chr22:50011586-50011836(-)$1	1	28	50	15.0343
((((((((.......)))))))	chr3:186502633-186502846(+)$1	1	99	121	13.3257
..((((.........))))...	chr2:203141070-203141335(+)$1	1	130	152	10.7669
(((((((.........))))))	chr16:31199251-31199476(+)$1	1	202	224	11.3647
..((((((.......)))))).	chr22:50013563-50013832(-)$1	1	52	74	13.6149
(((.((((.......))))..)	chr3:187459396-187459664(-)$1	1	232	254	15.0787

#PSSM
g : 0.17	h : 0.10	$ : 0.06	i : 0.06	d : 0.06	f : 0.06	= : 0.05	: : 0.05	c : 0.05	e : 0.05	# : 0.05	! : 0.05	[ : 0.03	" : 0.03	b : 0.03	J : 0.01	H : 0.01	
g : 0.24	e : 0.10	h : 0.10	d : 0.08	i : 0.06	f : 0.06	= : 0.05	c : 0.05	$ : 0.05	b : 0.05	" : 0.05	[ : 0.03	! : 0.03	
g : 0.20	d : 0.17	f : 0.12	e : 0.08	h : 0.08	b : 0.06	i : 0.06	= : 0.05	c : 0.05	! : 0.03	[ : 0.03	" : 0.01	
e : 0.20	g : 0.13	! : 0.13	d : 0.13	f : 0.08	h : 0.08	[ : 0.06	= : 0.03	c : 0.03	b : 0.03	i : 0.01	" : 0.01	
d : 0.29	e : 0.18	g : 0.13	! : 0.10	[ : 0.08	h : 0.08	f : 0.05	= : 0.03	i : 0.01	
d : 0.27	c : 0.18	e : 0.18	g : 0.13	h : 0.08	f : 0.05	= : 0.03	i : 0.01	! : 0.01	
c : 0.18	d : 0.17	g : 0.13	e : 0.13	r : 0.08	h : 0.08	[ : 0.05	f : 0.05	= : 0.03	b : 0.01	i : 0.01	! : 0.01	
c : 0.18	d : 0.17	e : 0.13	g : 0.12	r : 0.10	h : 0.08	a : 0.06	f : 0.05	= : 0.03	b : 0.01	i : 0.01	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
d : 0.22	c : 0.18	e : 0.17	g : 0.12	h : 0.08	a : 0.06	f : 0.05	r : 0.03	= : 0.01	b : 0.01	i : 0.01	
d : 0.22	c : 0.18	e : 0.17	g : 0.13	h : 0.08	] : 0.05	f : 0.05	= : 0.01	b : 0.01	i : 0.01	r : 0.01	2 : 0.01	
d : 0.27	c : 0.18	e : 0.17	g : 0.13	h : 0.08	f : 0.05	= : 0.03	] : 0.01	i : 0.01	2 : 0.01	
d : 0.32	e : 0.18	g : 0.13	2 : 0.10	h : 0.08	] : 0.05	f : 0.05	= : 0.03	i : 0.01	
e : 0.20	g : 0.15	2 : 0.13	d : 0.10	] : 0.08	h : 0.08	f : 0.05	= : 0.03	c : 0.03	b : 0.03	i : 0.01	3 : 0.01	7 : 0.01	4 : 0.01	
g : 0.18	f : 0.13	d : 0.12	b : 0.08	h : 0.08	e : 0.06	] : 0.06	c : 0.05	2 : 0.05	= : 0.03	i : 0.03	3 : 0.01	7 : 0.01	: : 0.01	4 : 0.01	
g : 0.24	h : 0.10	f : 0.08	c : 0.06	e : 0.06	b : 0.06	3 : 0.06	d : 0.06	= : 0.05	: : 0.03	i : 0.03	2 : 0.03	7 : 0.01	6 : 0.01	4 : 0.01	] : 0.01	

#score	802.9547652648367
#seq	58
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_transcript_m1_run1.txt

#BEAR
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^iiii	chr15:57443024-57443339(+)$1	315	135	174	56.5556
eeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr19:46405175-46405467(-)$1	292	29	68	50.9536
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr1:36761065-36761331(+)$1	266	126	165	56.1517
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr11:122558859-122559118(+)$1	259	95	134	56.6781
eeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr19:18280197-18280521(+)$1	324	35	74	52.4896
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^iiii	chr5:31526660-31526910(-)$1	250	206	245	56.5556
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr17:7474768-7475026(+)$1	258	106	145	56.6226
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr16:89973829-89974076(+)$1	247	27	66	52.1928
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc2	chr18:74085060-74085350(-)$1	290	38	77	56.4326
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr16:89974557-89974852(+)$1	295	167	206	56.6226
bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:129719628-129719874(+)$1	246	52	91	53.8242
gg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr7:104753145-104753426(+)$1	281	115	154	54.8779
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]d	chr12:3086379-3086648(+)$1	269	115	154	55.9840
!!a[a!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^ccc2	chr9:140166231-140166502(+)$1	271	6	45	46.1015
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr1:997365-997667(+)$1	302	194	233	56.5998
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr3:119764791-119765078(-)$1	287	131	170	56.6226
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr16:87734036-87734325(-)$1	289	233	272	56.6226
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr19:45323718-45323981(+)$1	263	83	122	56.6226
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr20:48698433-48698682(-)$1	249	74	113	55.0113
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr12:7045616-7045871(+)$1	255	83	122	55.0113
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr1:154241346-154241587(+)$1	241	106	145	56.6781
=========^^^^^^^^^^^^^^^^^^^^^^^^^^====	chr12:6442330-6442597(-)$1	267	196	235	45.4388
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr17:42153222-42153453(+)$1	231	70	109	56.6781
""dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr7:47496555-47496823(-)$1	268	99	138	49.9123
hhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhh	chr8:48236795-48237102(+)$1	307	147	186	51.7930
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^cccd	chr8:71024874-71025173(-)$1	299	170	209	56.6618
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr8:126225850-126226131(+)$1	281	111	150	56.5998
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr7:101557609-101557888(+)$1	279	157	196	56.6781
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr11:71150963-71151233(-)$1	270	149	188	56.5998
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr2:61409502-61409812(+)$1	310	162	201	56.6781
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr7:959039-959310(-)$1	271	118	157	56.6226
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr11:85699503-85699776(-)$1	273	138	177	56.6781
cc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]a]	chrX:109441227-109441528(-)$1	301	146	185	52.0838
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccch	chr8:129046302-129046569(+)$1	267	101	140	56.5374
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr12:100592875-100593180(-)$1	305	124	163	56.5998
bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^b	chr6:33289237-33289515(-)$1	278	72	111	53.7713
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr3:43377603-43377883(+)$1	280	80	119	56.1517
cc^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc333bb33	chr9:131039095-131039399(+)$1	304	79	118	46.7082
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr12:13236066-13236402(+)$1	336	112	151	56.1517
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr19:41812591-41812846(+)$1	255	156	195	56.6226
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr3:122103337-122103678(+)$1	341	20	59	56.6226
dd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr14:103575446-103575712(+)$1	266	171	210	54.7983
!!dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr16:29821763-29822059(+)$1	296	197	236	49.9073
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]	chrX:56592320-56592538(+)$1	218	114	153	56.6614
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]	chr1:154942221-154942495(-)$1	274	101	140	52.8876
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr13:114197436-114197709(+)$1	273	50	89	54.8931
gg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr2:135964071-135964447(-)$1	376	254	293	54.8779
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bbff	chr11:70860726-70861030(-)$1	304	218	257	55.8692
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chr9:129638389-129638670(+)$1	281	6	45	46.8062
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr11:70844482-70844767(-)$1	285	134	173	56.4832
ee!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr17:48212468-48212716(-)$1	248	117	156	45.5832
cc:dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr19:6680691-6680935(-)$1	244	65	104	47.3986
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr12:57115104-57115396(-)$1	292	104	143	56.4832
f^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ff	chr17:7417129-7417359(+)$1	230	34	73	55.1333
hhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhh	chr11:68659390-68659689(-)$1	299	17	56	49.9599
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhh	chr7:5352442-5352747(-)$1	305	210	249	56.0224
ddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd>>	chr5:318098-318379(+)$1	281	209	248	49.6409
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhh	chr12:57824629-57824871(-)$1	242	138	177	53.6287
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]	chr1:78572634-78572882(+)$1	248	167	206	56.6614

#otherMatches

#Seq PSSM
uuuccuuuccccuuucccCuuuuuucuccuuuuuuggag	chr15:57443024-57443339(+)$1	315	135	174	56.5556
GCACCCCCAUCCUCCCUCCAUUUCCUAUCCUCCCGUGCC	chr19:46405175-46405467(-)$1	292	29	68	50.9536
uccucccucccuuccuucuucccucccuuccucccuuuc	chr1:36761065-36761331(+)$1	266	126	165	56.1517
cuuccuucccuuccuucccuuccuccccuuccuuccucc	chr11:122558859-122559118(+)$1	259	95	134	56.6781
GGGGUucucucacccucuuucucuuuccuucccuccccc	chr19:18280197-18280521(+)$1	324	35	74	52.4896
AGUUCCUCCUUGUUUUCCUCCCAUGCCACCACCAAUGCC	chr5:31526660-31526910(-)$1	250	206	245	56.5556
CCUUUCCUCUCUUGCCUCUUCCCACUCACUUCCCUUUGG	chr17:7474768-7475026(+)$1	258	106	145	56.6226
CUGGcucccaccucccuccucccaccucccaccucccag	chr16:89973829-89974076(+)$1	247	27	66	52.1928
uucuuuccuuuccuuccuuuucuuuacuuccuucuuuuc	chr18:74085060-74085350(-)$1	290	38	77	56.4326
AGUUCCCACUUCUUUCCUCACAGUUCCCACCUCCCAGCU	chr16:89974557-89974852(+)$1	295	167	206	56.6226
gcuuccuccuucccucccuuccucccuuucuuccucccu	chr7:129719628-129719874(+)$1	246	52	91	53.8242
UGCCCCUCAUCACCAUCCACCACCCCAUCCAUCCACAGG	chr7:104753145-104753426(+)$1	281	115	154	54.8779
ccuuucccccuucccuucuuuuuccucucucuUUUGACC	chr12:3086379-3086648(+)$1	269	115	154	55.9840
cugucucccccucccuccacccuccuccugucccugggc	chr9:140166231-140166502(+)$1	271	6	45	46.1015
cccucccucccucccucccucccucAGUCACUCACGGGU	chr1:997365-997667(+)$1	302	194	233	56.5998
ccauccccuccucccauccaccuccucccauccccuggc	chr3:119764791-119765078(-)$1	287	131	170	56.6226
ccucuacccccugcccuccucccuccGCCUUAUCUGGAA	chr16:87734036-87734325(-)$1	289	233	272	56.6226
cagccccuaccccaucccuaugccauccccacccagcac	chr19:45323718-45323981(+)$1	263	83	122	56.6226
GCUGCUUUUUCUCCCUCCUCCUCAAGUUCCUUUUUGCAC	chr20:48698433-48698682(-)$1	249	74	113	55.0113
CCCCCCAAGUAUACUCAGCCUUCUCUCCCAUCCCAGGCU	chr12:7045616-7045871(+)$1	255	83	122	55.0113
ccuuucccuuccucuuccuuccuaucccuuaaaacugcc	chr1:154241346-154241587(+)$1	241	106	145	56.6781
CCCCACCCUGUCCCUCGUCACUUCCUCUGUCCUGUGGGG	chr12:6442330-6442597(-)$1	267	196	235	45.4388
UCUUCUACAUUUUCAAUUUCCUCAAGUACACCCUCUGGC	chr17:42153222-42153453(+)$1	231	70	109	56.6781
ccuccccuccccuccccuUUACCAGCACACCUCCAGGGA	chr7:47496555-47496823(-)$1	268	99	138	49.9123
GUGUCUGUUGUCAUUCUCUACUAGCUUUUUCUUCUUAUG	chr8:48236795-48237102(+)$1	307	147	186	51.7930
CCCUAUUUUCAUUCCUUUUUUAAAAAAUAAUAUAAGCUA	chr8:71024874-71025173(-)$1	299	170	209	56.6618
ccuuauuuccuuccuuccuuccuuccuucAACUGUACAG	chr8:126225850-126226131(+)$1	281	111	150	56.5998
cuuccuuccuuucuucuuucuuucuuuuuucccuuggga	chr7:101557609-101557888(+)$1	279	157	196	56.6781
uuaucuauccauccauccaucAUAAACCAAUGUUUGGGG	chr11:71150963-71151233(-)$1	270	149	188	56.5998
cuucuacucuucucccuuucccaauuuuccucucUGCCA	chr2:61409502-61409812(+)$1	310	162	201	56.6781
ucucucccucucucucuccuucccucccucccucucGUG	chr7:959039-959310(-)$1	271	118	157	56.6226
uuacuccuuuccugccuuccugccuuGUAUGCCUUGUCA	chr11:85699503-85699776(-)$1	273	138	177	56.6781
uuuuccuucuuccuucccugccucccuuccuuUGACUGU	chrX:109441227-109441528(-)$1	301	146	185	52.0838
ccacccccucuuuucucuccuccuucuccuccuccucuu	chr8:129046302-129046569(+)$1	267	101	140	56.5374
UAUCUCCCUCUGCUCCUUCCCUCUGACCCCUCUCUAGUG	chr12:100592875-100593180(-)$1	305	124	163	56.5998
GGUucuccuguccuuucuuucccacuaaccccaccuccc	chr6:33289237-33289515(-)$1	278	72	111	53.7713
ucuuuuUCUUUCUUUCUucccucccucccuuuccuuccu	chr3:43377603-43377883(+)$1	280	80	119	56.1517
GGUCAUUCCCGAAUCCCUCCCCUUCCUUUCCUCAUGCCC	chr9:131039095-131039399(+)$1	304	79	118	46.7082
CCUCCUCUUUCCCUUAAACACCCUCCCUUUUCCUUAGAC	chr12:13236066-13236402(+)$1	336	112	151	56.1517
UUUUUGACUAAAUAAUCCCCACCUCCCUUGAUCAUACAG	chr19:41812591-41812846(+)$1	255	156	195	56.6226
UCUCCAUCCACCCAGCUCCCACCAACUUAACUGCCCACG	chr3:122103337-122103678(+)$1	341	20	59	56.6226
ugucucccucccucccucccucuccacccugcccccaug	chr14:103575446-103575712(+)$1	266	171	210	54.7983
GGGGAGUUGGUGCUUUCUUUUCCUUUUUUUUUUUUUUCC	chr16:29821763-29822059(+)$1	296	197	236	49.9073
ccuuauuuccuuuaguuuccuuccuuAGCCGUUUUGAGU	chrX:56592320-56592538(+)$1	218	114	153	56.6614
UGUCCUAUUUCCUAAACCUUUCUCAUCCCUUCCCCGAUU	chr1:154942221-154942495(-)$1	274	101	140	52.8876
accccaccuccucccccugccccucgcccucccucuguc	chr13:114197436-114197709(+)$1	273	50	89	54.8931
GAGUUAUCACACCCAACACAAUUACAAUUCCUUAAUUAU	chr2:135964071-135964447(-)$1	376	254	293	54.8779
ccuccuucccuccccuccucccuuccuuccucccucUUG	chr11:70860726-70861030(-)$1	304	218	257	55.8692
GGAAAUGCAGACAUCAUGUuuccuuuuuuuuuuuuuccc	chr9:129638389-129638670(+)$1	281	6	45	46.8062
ccaauccauccacauccccccuccacucacUcauccguc	chr11:70844482-70844767(-)$1	285	134	173	56.4832
GGACAGGUGCCCCGACUCCCCCCACCCCUCCACCCCACC	chr17:48212468-48212716(-)$1	248	117	156	45.5832
AUUUGGGCUUUCUCCUCUCCCUUCUCUUAUUUCUUCCCA	chr19:6680691-6680935(-)$1	244	65	104	47.3986
UUUUCUCCUCCCCCUCCCCCUUUCUUUAUCUCCUUUUGC	chr12:57115104-57115396(-)$1	292	104	143	56.4832
UCACCUACCAGUCCCAAAUAUUCACCCACCUCUCCCAAG	chr17:7417129-7417359(+)$1	230	34	73	55.1333
cgugacccaccucgcuccccuucuccuccacccuccgcg	chr11:68659390-68659689(-)$1	299	17	56	49.9599
ccuccuccucuuccuccucuucuuccuccACCACAGACG	chr7:5352442-5352747(-)$1	305	210	249	56.0224
gcaccuccccccauccuuuauuuccccccacccugcauc	chr5:318098-318379(+)$1	281	209	248	49.6409
gguuccccccuuuucuuccccucuccccccuccuuccca	chr12:57824629-57824871(-)$1	242	138	177	53.6287
uuuuccuuuucuuucccuccuucccucucucccuugcuc	chr1:78572634-78572882(+)$1	248	167	206	56.6614

#DB
...................................))))	chr15:57443024-57443339(+)$1	1	135	174	56.5556
((((..............................)))))	chr19:46405175-46405467(-)$1	1	29	68	50.9536
...................................))))	chr1:36761065-36761331(+)$1	1	126	165	56.1517
...................................))))	chr11:122558859-122559118(+)$1	1	95	134	56.6781
((((...............................))))	chr19:18280197-18280521(+)$1	1	35	74	52.4896
...................................))))	chr5:31526660-31526910(-)$1	1	206	245	56.5556
...................................))))	chr17:7474768-7475026(+)$1	1	106	145	56.6226
((((...............................))))	chr16:89973829-89974076(+)$1	1	27	66	52.1928
...................................))).	chr18:74085060-74085350(-)$1	1	38	77	56.4326
...................................))))	chr16:89974557-89974852(+)$1	1	167	206	56.6226
((.....................................	chr7:129719628-129719874(+)$1	1	52	91	53.8242
((.................................))))	chr7:104753145-104753426(+)$1	1	115	154	54.8779
...................................)).)	chr12:3086379-3086648(+)$1	1	115	154	55.9840
..(.(..(((.........................))).	chr9:140166231-140166502(+)$1	1	6	45	46.1015
...................................))))	chr1:997365-997667(+)$1	1	194	233	56.5998
...................................))))	chr3:119764791-119765078(-)$1	1	131	170	56.6226
...................................))))	chr16:87734036-87734325(-)$1	1	233	272	56.6226
...................................))))	chr19:45323718-45323981(+)$1	1	83	122	56.6226
((.................................))))	chr20:48698433-48698682(-)$1	1	74	113	55.0113
((.................................))))	chr12:7045616-7045871(+)$1	1	83	122	55.0113
...................................))))	chr1:154241346-154241587(+)$1	1	106	145	56.6781
(((((((((..........................))))	chr12:6442330-6442597(-)$1	1	196	235	45.4388
...................................))))	chr17:42153222-42153453(+)$1	1	70	109	56.6781
..((((.............................))))	chr7:47496555-47496823(-)$1	1	99	138	49.9123
(((................................))))	chr8:48236795-48237102(+)$1	1	147	186	51.7930
...................................))))	chr8:71024874-71025173(-)$1	1	170	209	56.6618
...................................))))	chr8:126225850-126226131(+)$1	1	111	150	56.5998
...................................))))	chr7:101557609-101557888(+)$1	1	157	196	56.6781
...................................))))	chr11:71150963-71151233(-)$1	1	149	188	56.5998
...................................))))	chr2:61409502-61409812(+)$1	1	162	201	56.6781
...................................))))	chr7:959039-959310(-)$1	1	118	157	56.6226
...................................))))	chr11:85699503-85699776(-)$1	1	138	177	56.6781
((...............................))).).	chrX:109441227-109441528(-)$1	1	146	185	52.0838
...................................))))	chr8:129046302-129046569(+)$1	1	101	140	56.5374
...................................))))	chr12:100592875-100593180(-)$1	1	124	163	56.5998
((....................................)	chr6:33289237-33289515(-)$1	1	72	111	53.7713
...................................))))	chr3:43377603-43377883(+)$1	1	80	119	56.1517
((...........................)))...))..	chr9:131039095-131039399(+)$1	1	79	118	46.7082
...................................))))	chr12:13236066-13236402(+)$1	1	112	151	56.1517
...................................))))	chr19:41812591-41812846(+)$1	1	156	195	56.6226
...................................))))	chr3:122103337-122103678(+)$1	1	20	59	56.6226
((.................................))))	chr14:103575446-103575712(+)$1	1	171	210	54.7983
..((((.............................))))	chr16:29821763-29822059(+)$1	1	197	236	49.9073
...................................))).	chrX:56592320-56592538(+)$1	1	114	153	56.6614
.(((...............................))).	chr1:154942221-154942495(-)$1	1	101	140	52.8876
((..................................)))	chr13:114197436-114197709(+)$1	1	50	89	54.8931
((.................................))))	chr2:135964071-135964447(-)$1	1	254	293	54.8779
...................................))))	chr11:70860726-70861030(-)$1	1	218	257	55.8692
(((((............................))))))	chr9:129638389-129638670(+)$1	1	6	45	46.8062
....................................)))	chr11:70844482-70844767(-)$1	1	134	173	56.4832
((..(((((..........................))))	chr17:48212468-48212716(-)$1	1	117	156	45.5832
)).((((............................))))	chr19:6680691-6680935(-)$1	1	65	104	47.3986
....................................)))	chr12:57115104-57115396(-)$1	1	104	143	56.4832
(....................................))	chr17:7417129-7417359(+)$1	1	34	73	55.1333
((((...............................))))	chr11:68659390-68659689(-)$1	1	17	56	49.9599
...................................))))	chr7:5352442-5352747(-)$1	1	210	249	56.0224
(((..............................))))..	chr5:318098-318379(+)$1	1	209	248	49.6409
((..................................)))	chr12:57824629-57824871(-)$1	1	138	177	53.6287
...................................))).	chr1:78572634-78572882(+)$1	1	167	206	56.6614

#PSSM
^ : 0.55	e : 0.10	d : 0.05	h : 0.05	c : 0.05	b : 0.03	g : 0.03	! : 0.03	f : 0.03	= : 0.01	" : 0.01	[ : 0.01	
^ : 0.57	e : 0.10	c : 0.06	d : 0.05	h : 0.05	b : 0.03	g : 0.03	! : 0.03	= : 0.01	" : 0.01	f : 0.01	
^ : 0.76	d : 0.06	e : 0.03	h : 0.03	a : 0.01	= : 0.01	c : 0.01	f : 0.01	! : 0.01	: : 0.01	
^ : 0.79	d : 0.06	e : 0.03	[ : 0.01	= : 0.01	c : 0.01	f : 0.01	! : 0.01	h : 0.01	
^ : 0.88	d : 0.05	a : 0.01	= : 0.01	f : 0.01	e : 0.01	
^ : 0.89	d : 0.05	! : 0.01	= : 0.01	e : 0.01	
^ : 0.93	! : 0.01	= : 0.01	e : 0.01	d : 0.01	
^ : 0.94	c : 0.01	= : 0.01	e : 0.01	
^ : 0.94	c : 0.01	= : 0.01	e : 0.01	
^ : 0.98	c : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.98	c : 0.01	
^ : 0.98	c : 0.01	
^ : 0.98	c : 0.01	
^ : 0.98	3 : 0.01	
^ : 0.93	c : 0.01	3 : 0.01	f : 0.01	d : 0.01	
^ : 0.91	e : 0.01	c : 0.01	3 : 0.01	f : 0.01	d : 0.01	
d : 0.23	e : 0.18	c : 0.13	^ : 0.11	g : 0.10	f : 0.06	b : 0.05	h : 0.05	i : 0.03	= : 0.01	
d : 0.23	e : 0.20	c : 0.15	g : 0.10	f : 0.06	h : 0.06	^ : 0.05	b : 0.05	i : 0.03	= : 0.01	] : 0.01	
d : 0.22	e : 0.20	c : 0.15	f : 0.10	g : 0.10	h : 0.06	i : 0.03	^ : 0.03	] : 0.01	= : 0.01	a : 0.01	3 : 0.01	> : 0.01	
d : 0.25	e : 0.20	f : 0.10	g : 0.10	h : 0.08	] : 0.06	i : 0.03	2 : 0.03	c : 0.03	^ : 0.01	= : 0.01	b : 0.01	3 : 0.01	> : 0.01	

#score	3200.4985166702613
#seq	59
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_transcript_m2_run2.txt

#BEAR
cc!!cccqqqqqqqqccc22c	chr8:141621163-141621454(-)$1	291	164	185	15.1695
ddd[cccqqqqqqqqccc333	chr7:138155844-138156092(+)$1	248	123	144	15.3715
ddd[cccqqqqqqqqcccddd	chr6:157343239-157343475(+)$1	236	122	143	14.6012
bffffffqqqqqqqqffffff	chr2:235863676-235863893(+)$1	217	192	213	14.8288
c[eeeeeqqqqqqqqeeeee2	chr10:97320276-97320579(-)$1	303	24	45	14.9726
ee[ddddqqqqqqqqddddee	chr2:236666891-236667190(+)$1	299	54	75	13.7409
!!eeeeeqqqqqqqqeeeee2	chr9:94185143-94185425(-)$1	282	184	205	15.0617
iiiiiiiqqqqqqqqiiiiii	chr20:17653306-17653689(-)$1	383	254	275	15.3706
:ffffffqqqqqqqqffffff	chr6:2155147-2155384(-)$1	237	125	146	14.1827
e####bbqqqqqqqqbb333e	chr2:236539394-236539667(+)$1	273	181	202	13.8102
""eeeeeqqqqqqqqeeeeef	chr20:62527052-62527304(+)$1	252	136	157	15.0667
c!!ddddqqqqqqqqdddd22	chr16:89549270-89549521(-)$1	251	94	115	13.9393
####cccqqqqqqqqccc333	chr17:44241739-44241961(-)$1	222	109	130	15.7533
ffffcccqqqqqqqqccc>>>	chr15:99353556-99353845(+)$1	289	39	60	14.4950
g[eeeeeqqqqqqqqeeeee]	chr9:136855089-136855385(-)$1	296	18	39	15.1587
iiiiiiiqqqqqqqqiiiiii	chr7:158339395-158339765(-)$1	370	255	276	15.3706
)ffffffqqqqqqqqffffff	chr20:61548554-61548823(-)$1	269	75	96	14.6153
Aeeeeeaqqqqqqqqa]eeee	chr19:878844-879107(-)$1	263	189	210	14.0247
=======qqqqqqqq======	chr2:236486554-236486794(+)$1	240	200	221	15.7451
gggggggqqqqqqqqgggggg	chr13:113360678-113361110(+)$1	432	2	23	15.5216
Cffffffqqqqqqqqffffff	chr11:86855934-86856221(+)$1	287	20	41	14.0346
dd[a[bbqqqqqqqqbb]a22	chr7:1149094-1149385(-)$1	291	112	133	13.4491
fff"""aqqqqqqqqa22fff	chr20:32251251-32251486(-)$1	235	124	145	13.9256
dd!!cccqqqqqqqqccc]dd	chr12:31714747-31715012(-)$1	265	235	256	15.0569
d[ddddaqqqqqqqqa]dddd	chr16:75282300-75282527(-)$1	227	67	88	13.8639
iiiiiiiqqqqqqqqiiiiii	chr3:185451775-185452176(-)$1	401	306	327	15.3706
####cccqqqqqqqqccc444	chr1:2182981-2183258(+)$1	277	64	85	15.4659
hhh[cccqqqqqqqqccc]hh	chr4:87885913-87886194(+)$1	281	214	235	14.6239
=======qqqqqqqq======	chr19:3098093-3098354(+)$1	261	40	61	15.7451
:ffffffqqqqqqqqffffff	chr10:105419453-105419696(-)$1	243	157	178	14.1827
:ffffffqqqqqqqqffffff	chr10:689497-689843(-)$1	346	68	89	14.1827
d[eeeeeqqqqqqqqeeeeed	chr2:102332900-102333173(+)$1	273	147	168	14.7540
d[eeeeeqqqqqqqqeeeee]	chr11:65194858-65195107(+)$1	249	136	157	15.0442
gggggggqqqqqqqqgggggg	chr10:71929796-71930063(-)$1	267	219	240	15.5216
ddeeeeeqqqqqqqqeeeee]	chr2:236438793-236439045(+)$1	252	45	66	14.6777
cffffffqqqqqqqqffffff	chr12:112035282-112035539(-)$1	257	114	135	15.0216
ccc[cccqqqqqqqqccc]cc	chrX:133029520-133029781(-)$1	261	156	177	15.5249
gggggggqqqqqqqqgggggg	chr22:20934864-20935123(+)$1	259	20	41	15.5216
gggggggqqqqqqqqgggggg	chr2:129056374-129056626(-)$1	252	198	219	15.5216
##eeeeeqqqqqqqqeeeee4	chr9:137256023-137256293(+)$1	270	41	62	15.0390
iiiiiiiqqqqqqqqiiiiii	chr6:7140986-7141233(+)$1	247	96	117	15.3706
ccc[cccqqqqqqqqccc]cc	chr2:241565062-241565310(+)$1	248	70	91	15.5249
fffffbbqqqqqqqqbb]fff	chr9:126691584-126691844(-)$1	260	154	175	13.9190
$eeeeeaqqqqqqqqa]eeee	chr12:23862795-23863106(-)$1	311	205	226	14.6438
""eeeeeqqqqqqqqeeeee3	chr19:57350086-57350334(-)$1	248	68	89	15.2146
d!!ddddqqqqqqqqdddd22	chr16:75034038-75034326(+)$1	288	183	204	13.8314
ccc[cccqqqqqqqqccc]cc	chr2:11479763-11480003(-)$1	240	25	46	15.5249
gbb[cccqqqqqqqqccc]bb	chr7:157584012-157584305(-)$1	293	237	258	14.4921
ggddddaqqqqqqqqa]dddd	chr13:51097944-51098271(+)$1	327	294	315	13.8535
gggggggqqqqqqqqgggggg	chr17:75456242-75456567(+)$1	325	178	199	15.5216
"ffffffqqqqqqqqffffff	chr20:32252005-32252230(-)$1	225	139	160	15.1295
gggggggqqqqqqqqgggggg	chr6:138874645-138874958(-)$1	313	282	303	15.5216
ggggg[aqqqqqqqqaggggg	chr8:121779529-121779850(-)$1	321	14	35	15.3610
ddeeeeeqqqqqqqqeeeee]	chr17:80190211-80190486(+)$1	275	138	159	14.6777
accccccqqqqqqqqccc]cc	chr6:7109719-7110001(+)$1	282	78	99	15.2628
b"""cccqqqqqqqqcccbb=	chr17:55511264-55511524(+)$1	260	132	153	14.7131
gggggggqqqqqqqqgggggg	chr20:3882310-3882587(+)$1	277	42	63	15.5216
fff[cccqqqqqqqqccc444	chr1:246300865-246301188(-)$1	323	143	164	15.3937
:ffffffqqqqqqqqffffff	chr22:28959858-28960132(-)$1	274	226	247	14.1827
[ffffffqqqqqqqqffffff	chr19:1165471-1165774(-)$1	303	31	52	15.0973
=======qqqqqqqq======	chr16:87887515-87887772(-)$1	257	93	114	15.7451
eeee[bbqqqqqqqqbbeeee	chr20:35487390-35487688(-)$1	298	129	150	13.8176
[ffffffqqqqqqqqffffff	chr2:11450712-11450978(-)$1	266	223	244	15.0973
####cccqqqqqqqqccc444	chr3:4402907-4403203(-)$1	296	73	94	15.4659
b[eeeeeqqqqqqqqeeeee]	chr1:228275966-228276276(+)$1	310	117	138	14.9593
[ffffffqqqqqqqqffffff	chr17:70484150-70484380(-)$1	230	20	41	15.0973
gggggggqqqqqqqqgggggg	chr17:53378547-53378796(+)$1	249	163	184	15.5216
""bbcccqqqqqqqqccc]bb	chr1:61678103-61678403(+)$1	300	206	227	14.4680
eee[cccqqqqqqqqccc]ee	chr4:1239850-1240099(-)$1	249	148	169	15.3729
"a[ddddqqqqqqqqdddd]a	chr15:72521828-72522093(-)$1	265	99	120	14.0389

#otherMatches

#Seq PSSM
ucgccgccuugcacugugcag	chr8:141621163-141621454(-)$1	291	164	185	15.1695
auAUUUAUUUCAUCUUGAUUU	chr7:138155844-138156092(+)$1	248	123	144	15.3715
UGGCUGUUACCCGACGCACCG	chr6:157343239-157343475(+)$1	236	122	143	14.6012
GGGUCAGCUUUGCUCCUGGCC	chr2:235863676-235863893(+)$1	217	192	213	14.8288
GUGUGUUCAUUCAUCAGCAUC	chr10:97320276-97320579(-)$1	303	24	45	14.9726
UAGUAAUGACUAAUAAUUAUG	chr2:236666891-236667190(+)$1	299	54	75	13.7409
UGAUGUGGGAAUAUGCGCGUA	chr9:94185143-94185425(-)$1	282	184	205	15.0617
gugaauauaugaguuuauuca	chr20:17653306-17653689(-)$1	383	254	275	15.3706
GAAAGAGUUAUCAGCCUCUUU	chr6:2155147-2155384(-)$1	237	125	146	14.1827
CCCGAUCAAAACAAAGAGCCG	chr2:236539394-236539667(+)$1	273	181	202	13.8102
UUGGUUUGUUAGAAAAAACCU	chr20:62527052-62527304(+)$1	252	136	157	15.0667
ccuuagauuuauuguuuuaua	chr16:89549270-89549521(-)$1	251	94	115	13.9393
AGUAAACUUUCAUUUGUUGAA	chr17:44241739-44241961(-)$1	222	109	130	15.7533
AAACCCUGCUAUUUAAGGuaa	chr15:99353556-99353845(+)$1	289	39	60	14.4950
GAGGGGUGUUUAGGGGCCCUG	chr9:136855089-136855385(-)$1	296	18	39	15.1587
GUGCAUCUGCAUGUUGGUGCA	chr7:158339395-158339765(-)$1	370	255	276	15.3706
ugccauuguaaaccugauggc	chr20:61548554-61548823(-)$1	269	75	96	14.6153
gcuggUGGACAUUGACAACCA	chr19:878844-879107(-)$1	263	189	210	14.0247
CCAGGGCGAGCCUCAGUUCUG	chr2:236486554-236486794(+)$1	240	200	221	15.7451
GAUGUUCAGCAGGCAGGACAU	chr13:113360678-113361110(+)$1	432	2	23	15.5216
uagguaacauaucuauuaccu	chr11:86855934-86856221(+)$1	287	20	41	14.0346
CCACGCAGAGGUGAGUGGGGA	chr7:1149094-1149385(-)$1	291	112	133	13.4491
GGGGGAGAAUCAGCACGAUCC	chr20:32251251-32251486(-)$1	235	124	145	13.9256
CAAAGGGAAAAAAUGCUCAUG	chr12:31714747-31715012(-)$1	265	235	256	15.0569
CACCCAGGAUGGGGACAUGGG	chr16:75282300-75282527(-)$1	227	67	88	13.8639
CCUCUUGUGGCGAAGUAAGGG	chr3:185451775-185452176(-)$1	401	306	327	15.3706
CUGUGUAACGGUUACUGCCUC	chr1:2182981-2183258(+)$1	277	64	85	15.4659
UUUGAGUUUGCCGCUAUUGGA	chr4:87885913-87886194(+)$1	281	214	235	14.6239
UAUGCAUGAAUGUGAAUGCAU	chr19:3098093-3098354(+)$1	261	40	61	15.7451
UAGGGUCUGACUUGUGGCCCU	chr10:105419453-105419696(-)$1	243	157	178	14.1827
CAUUUGUGAACAGUAACAAGU	chr10:689497-689843(-)$1	346	68	89	14.1827
uaucaguuagccuuugcuggg	chr2:102332900-102333173(+)$1	273	147	168	14.7540
CACUACUGACAAACGGGUGGA	chr11:65194858-65195107(+)$1	249	136	157	15.0442
gccucacagcccucggugagg	chr10:71929796-71930063(-)$1	267	219	240	15.5216
GCCAGCUGCUGCAGAGGCUGA	chr2:236438793-236439045(+)$1	252	45	66	14.6777
GGCGGGCGGUUGUCAGUUCGU	chr12:112035282-112035539(-)$1	257	114	135	15.0216
CCUUUUUCUUCAUCAAAAUAG	chrX:133029520-133029781(-)$1	261	156	177	15.5249
UUGGGCUGAGCAUGGGGCCCA	chr22:20934864-20935123(+)$1	259	20	41	15.5216
GGAAAGCCUUUUUUUGuuuuu	chr2:129056374-129056626(-)$1	252	198	219	15.5216
AGGCAUCAGGGAUGAGGUGCA	chr9:137256023-137256293(+)$1	270	41	62	15.0390
CGCUGGCCCCCGAGCGCCAGC	chr6:7140986-7141233(+)$1	247	96	117	15.3706
UCAGAGCGAGGUGAGGCUGUG	chr2:241565062-241565310(+)$1	248	70	91	15.5249
GGCCACCUAAGGUGUGGAUGG	chr9:126691584-126691844(-)$1	260	154	175	13.9190
UUUUCACUUCAAGCUGCUGAA	chr12:23862795-23863106(-)$1	311	205	226	14.6438
GGGCGGCUGCGGUUUGCCGCA	chr19:57350086-57350334(-)$1	248	68	89	15.2146
GAAGGGCAGAGCGAAGCCUAC	chr16:75034038-75034326(+)$1	288	183	204	13.8314
ugcuggauucagucuuccugc	chr2:11479763-11480003(-)$1	240	25	46	15.5249
AUAUGUGGACGCGGGCGCUUA	chr7:157584012-157584305(-)$1	293	237	258	14.4921
GUGUAGCUAUUCAGUGACUGC	chr13:51097944-51098271(+)$1	327	294	315	13.8535
UGGGCUGGCUCCUCACAGCUC	chr17:75456242-75456567(+)$1	325	178	199	15.5216
CUCCCUCAUGCCUAAGAGGGA	chr20:32252005-32252230(-)$1	225	139	160	15.1295
AACAUGGAUCACCUAUCAUGU	chr6:138874645-138874958(-)$1	313	282	303	15.5216
agauuugaaccaagacagucu	chr8:121779529-121779850(-)$1	321	14	35	15.3610
AGGGGUCAGGUUCAGGACCCU	chr17:80190211-80190486(+)$1	275	138	159	14.6777
CCGGGCCGCUUGACAGGCGCC	chr6:7109719-7110001(+)$1	282	78	99	15.2628
gcacgugaguuaauacaucca	chr17:55511264-55511524(+)$1	260	132	153	14.7131
UUAAAGCUCUUGGAUGUUUUA	chr20:3882310-3882587(+)$1	277	42	63	15.5216
ACACCUGUGCGUUCUCAGAAC	chr1:246300865-246301188(-)$1	323	143	164	15.3937
auccauucauucguuaaugga	chr22:28959858-28960132(-)$1	274	226	247	14.1827
ggggucuggagucugagaucu	chr19:1165471-1165774(-)$1	303	31	52	15.0973
GCGGGGGGGUCCUGGCCUCUG	chr16:87887515-87887772(-)$1	257	93	114	15.7451
gccaugggcaaguuaccuggc	chr20:35487390-35487688(-)$1	298	129	150	13.8176
CAGGAUAUAAAAUAUUAUUUU	chr2:11450712-11450978(-)$1	266	223	244	15.0973
GAAUGUCUGUGGGGUGACUCU	chr3:4402907-4403203(-)$1	296	73	94	15.4659
UCCCAGAAAAAGGAAUUUGGU	chr1:228275966-228276276(+)$1	310	117	138	14.9593
ACAGUUGGUGAGGUGCGGCUG	chr17:70484150-70484380(-)$1	230	20	41	15.0973
auGUCUUAAUCAACAAAGACA	chr17:53378547-53378796(+)$1	249	163	184	15.5216
UGUCCUUAUUGAUAAAAGAGA	chr1:61678103-61678403(+)$1	300	206	227	14.4680
CCACUGCUCUCCCCCGCACUG	chr4:1239850-1240099(-)$1	249	148	169	15.3729
GAGGGGGACAGGAAGCCUCGU	chr15:72521828-72522093(-)$1	265	99	120	14.0389

#DB
((..(((........)))..)	chr8:141621163-141621454(-)$1	1	164	185	15.1695
(((.(((........)))...	chr7:138155844-138156092(+)$1	1	123	144	15.3715
(((.(((........))))))	chr6:157343239-157343475(+)$1	1	122	143	14.6012
)((((((........))))))	chr2:235863676-235863893(+)$1	1	192	213	14.8288
(.(((((........))))).	chr10:97320276-97320579(-)$1	1	24	45	14.9726
((.((((........))))))	chr2:236666891-236667190(+)$1	1	54	75	13.7409
..(((((........))))).	chr9:94185143-94185425(-)$1	1	184	205	15.0617
(((((((........))))))	chr20:17653306-17653689(-)$1	1	254	275	15.3706
.((((((........))))))	chr6:2155147-2155384(-)$1	1	125	146	14.1827
(....((........))...)	chr2:236539394-236539667(+)$1	1	181	202	13.8102
..(((((........))))))	chr20:62527052-62527304(+)$1	1	136	157	15.0667
(..((((........))))..	chr16:89549270-89549521(-)$1	1	94	115	13.9393
....(((........)))...	chr17:44241739-44241961(-)$1	1	109	130	15.7533
(((((((........)))...	chr15:99353556-99353845(+)$1	1	39	60	14.4950
(.(((((........))))).	chr9:136855089-136855385(-)$1	1	18	39	15.1587
(((((((........))))))	chr7:158339395-158339765(-)$1	1	255	276	15.3706
.((((((........))))))	chr20:61548554-61548823(-)$1	1	75	96	14.6153
(((((((........).))))	chr19:878844-879107(-)$1	1	189	210	14.0247
(((((((........))))))	chr2:236486554-236486794(+)$1	1	200	221	15.7451
(((((((........))))))	chr13:113360678-113361110(+)$1	1	2	23	15.5216
(((((((........))))))	chr11:86855934-86856221(+)$1	1	20	41	14.0346
((.(.((........)).)..	chr7:1149094-1149385(-)$1	1	112	133	13.4491
(((...(........)..)))	chr20:32251251-32251486(-)$1	1	124	145	13.9256
((..(((........))).))	chr12:31714747-31715012(-)$1	1	235	256	15.0569
(.(((((........).))))	chr16:75282300-75282527(-)$1	1	67	88	13.8639
(((((((........))))))	chr3:185451775-185452176(-)$1	1	306	327	15.3706
....(((........)))...	chr1:2182981-2183258(+)$1	1	64	85	15.4659
(((.(((........))).))	chr4:87885913-87886194(+)$1	1	214	235	14.6239
(((((((........))))))	chr19:3098093-3098354(+)$1	1	40	61	15.7451
.((((((........))))))	chr10:105419453-105419696(-)$1	1	157	178	14.1827
.((((((........))))))	chr10:689497-689843(-)$1	1	68	89	14.1827
(.(((((........))))))	chr2:102332900-102333173(+)$1	1	147	168	14.7540
(.(((((........))))).	chr11:65194858-65195107(+)$1	1	136	157	15.0442
(((((((........))))))	chr10:71929796-71930063(-)$1	1	219	240	15.5216
(((((((........))))).	chr2:236438793-236439045(+)$1	1	45	66	14.6777
(((((((........))))))	chr12:112035282-112035539(-)$1	1	114	135	15.0216
(((.(((........))).))	chrX:133029520-133029781(-)$1	1	156	177	15.5249
(((((((........))))))	chr22:20934864-20935123(+)$1	1	20	41	15.5216
(((((((........))))))	chr2:129056374-129056626(-)$1	1	198	219	15.5216
..(((((........))))).	chr9:137256023-137256293(+)$1	1	41	62	15.0390
(((((((........))))))	chr6:7140986-7141233(+)$1	1	96	117	15.3706
(((.(((........))).))	chr2:241565062-241565310(+)$1	1	70	91	15.5249
(((((((........)).)))	chr9:126691584-126691844(-)$1	1	154	175	13.9190
.((((((........).))))	chr12:23862795-23863106(-)$1	1	205	226	14.6438
..(((((........))))).	chr19:57350086-57350334(-)$1	1	68	89	15.2146
(..((((........))))..	chr16:75034038-75034326(+)$1	1	183	204	13.8314
(((.(((........))).))	chr2:11479763-11480003(-)$1	1	25	46	15.5249
(((.(((........))).))	chr7:157584012-157584305(-)$1	1	237	258	14.4921
))(((((........).))))	chr13:51097944-51098271(+)$1	1	294	315	13.8535
(((((((........))))))	chr17:75456242-75456567(+)$1	1	178	199	15.5216
.((((((........))))))	chr20:32252005-32252230(-)$1	1	139	160	15.1295
(((((((........))))))	chr6:138874645-138874958(-)$1	1	282	303	15.5216
(((((.(........))))))	chr8:121779529-121779850(-)$1	1	14	35	15.3610
(((((((........))))).	chr17:80190211-80190486(+)$1	1	138	159	14.6777
(((((((........))).))	chr6:7109719-7110001(+)$1	1	78	99	15.2628
(...(((........))))))	chr17:55511264-55511524(+)$1	1	132	153	14.7131
(((((((........))))))	chr20:3882310-3882587(+)$1	1	42	63	15.5216
(((.(((........)))...	chr1:246300865-246301188(-)$1	1	143	164	15.3937
.((((((........))))))	chr22:28959858-28960132(-)$1	1	226	247	14.1827
.((((((........))))))	chr19:1165471-1165774(-)$1	1	31	52	15.0973
(((((((........))))))	chr16:87887515-87887772(-)$1	1	93	114	15.7451
((((.((........))))))	chr20:35487390-35487688(-)$1	1	129	150	13.8176
.((((((........))))))	chr2:11450712-11450978(-)$1	1	223	244	15.0973
....(((........)))...	chr3:4402907-4403203(-)$1	1	73	94	15.4659
(.(((((........))))).	chr1:228275966-228276276(+)$1	1	117	138	14.9593
.((((((........))))))	chr17:70484150-70484380(-)$1	1	20	41	15.0973
(((((((........))))))	chr17:53378547-53378796(+)$1	1	163	184	15.5216
..(((((........))).))	chr1:61678103-61678403(+)$1	1	206	227	14.4680
(((.(((........))).))	chr4:1239850-1240099(-)$1	1	148	169	15.3729
.(.((((........)))).)	chr15:72521828-72522093(-)$1	1	99	120	14.0389

#PSSM
g : 0.17	d : 0.14	c : 0.10	" : 0.07	e : 0.05	i : 0.05	: : 0.05	# : 0.05	f : 0.05	b : 0.04	= : 0.04	[ : 0.04	! : 0.01	) : 0.01	A : 0.01	C : 0.01	h : 0.01	$ : 0.01	a : 0.01	
f : 0.22	g : 0.14	d : 0.08	[ : 0.08	c : 0.07	e : 0.07	# : 0.07	i : 0.05	" : 0.05	! : 0.04	= : 0.04	h : 0.01	b : 0.01	a : 0.01	
f : 0.22	e : 0.21	g : 0.12	! : 0.05	d : 0.05	i : 0.05	# : 0.05	c : 0.05	[ : 0.04	= : 0.04	b : 0.02	h : 0.01	" : 0.01	
f : 0.20	e : 0.20	[ : 0.12	g : 0.12	d : 0.08	i : 0.05	# : 0.05	= : 0.04	! : 0.02	" : 0.02	a : 0.01	c : 0.01	b : 0.01	
c : 0.25	f : 0.18	e : 0.18	g : 0.12	d : 0.08	i : 0.05	= : 0.04	[ : 0.02	# : 0.01	" : 0.01	
c : 0.25	e : 0.18	f : 0.17	g : 0.11	d : 0.08	i : 0.05	b : 0.05	= : 0.04	" : 0.01	[ : 0.01	
c : 0.25	f : 0.17	e : 0.15	g : 0.11	a : 0.08	d : 0.05	i : 0.05	b : 0.05	= : 0.04	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.25	f : 0.17	e : 0.15	g : 0.11	a : 0.08	d : 0.05	i : 0.05	b : 0.05	= : 0.04	
c : 0.25	f : 0.17	e : 0.15	g : 0.12	d : 0.05	i : 0.05	b : 0.05	] : 0.05	= : 0.04	2 : 0.01	
c : 0.25	e : 0.20	f : 0.17	g : 0.12	d : 0.08	i : 0.05	= : 0.04	] : 0.02	3 : 0.01	2 : 0.01	
f : 0.20	e : 0.20	g : 0.12	] : 0.12	d : 0.10	i : 0.05	3 : 0.04	= : 0.04	4 : 0.04	2 : 0.01	> : 0.01	a : 0.01	b : 0.01	
e : 0.22	f : 0.20	g : 0.12	2 : 0.05	d : 0.05	i : 0.05	c : 0.05	3 : 0.04	= : 0.04	4 : 0.04	b : 0.04	> : 0.01	h : 0.01	] : 0.01	
f : 0.21	g : 0.12	e : 0.08	c : 0.07	d : 0.07	2 : 0.07	] : 0.07	i : 0.05	= : 0.05	4 : 0.05	3 : 0.04	b : 0.02	> : 0.01	h : 0.01	a : 0.01	

#score	1041.6725416326217
#seq	70
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800XSC_GNL3_transcript_m1_run2.txt

#BEAR
$$$$$eeeee[cccuuuuuuuuuuuuccc]eeeee	chr12:48416393-48416608(+)$1	215	133	168	19.6890
ddd[ccc"""ddddrrrrrrrrrdddd]ccc]ddd	chrM:488-713(+)$1	225	89	124	14.3291
ee[bb!!ggggggguuuuuuuuuuuuggggggg22	chr11:106689567-106689780(-)$1	213	4	39	18.7605
eeee[ffffff^^^^^^^^^^^^^^^^^^^^^^^^	chr12:69236346-69236554(-)$1	208	149	184	17.9603
!eeeee####ffffffrrrrrrrrrffffff333e	chr10:128256267-128256476(-)$1	209	53	88	14.9996
fffff[eeeee[bbtttttttttttbbeeeeefff	chr6:27792114-27792355(+)$1	241	142	177	16.4666
!eeeee####ffffffrrrrrrrrrffffff333e	chr10:128256276-128256488(-)$1	212	65	100	14.9996
dd!!ffffff[cccuuuuuuuuuuuuccc]fffff	chr7:103029312-103029525(-)$1	213	162	197	20.4938
[ccc^^^^^^^^^^^^^^^^^^^^^ccc22eeeee	chr4:83816904-83817169(-)$1	265	44	79	18.2920
ee####eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chrM:9852-10078(+)$1	226	10	45	18.0999
==========[ccctttttttttttccc=======	chr13:92003225-92003447(+)$1	222	109	144	19.4993
ddeeeee^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:12176-12400(+)$1	224	138	173	19.6993
deeeee$$$$$cccooooooccc4444eeeee]dd	chr1:173835344-173835554(-)$1	210	72	107	12.0787
nncccccc!!ddddtttttttttttdddd22ccc:	chr19:893479-893691(+)$1	212	71	106	15.4634
ggg^^^^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr15:72150877-72151102(+)$1	225	4	39	19.0792
ddd[ccc"""ddddrrrrrrrrrdddd]ccc]ddd	chrM:516-721(+)$1	205	61	96	14.3291
dd!!ffffff[cccuuuuuuuuuuuuccc]fffff	chr7:103029306-103029512(-)$1	206	149	184	20.4938
deeeee$$$$$cccooooooccc4444eeeee]dd	chr1:173835354-173835573(-)$1	219	91	126	12.0787

#otherMatches

#Seq PSSM
GUGGAUUGCCUGGUCAGUGUUUGAAAGCCUGGCAA	chr12:48416393-48416608(+)$1	215	133	168	19.6890
AGUUUAUGUAGCUUACCUCCUCAAAGCAAUACACU	chrM:488-713(+)$1	225	89	124	14.3291
gucuugaagcucuccaagucaucaccgaggguuga	chr11:106689567-106689780(-)$1	213	4	39	18.7605
AACUAUUUUAUGUCCACAUUUCACUUCUGUAUUUA	chr12:69236346-69236554(-)$1	208	149	184	17.9603
AAGGUGCCACUCGAGGCUUCUUCUCCCUUGGAAAC	chr10:128256267-128256476(-)$1	209	53	88	14.9996
UACUUUCUCAGCUGAAGAGUGGUAACACUGAGGAG	chr6:27792114-27792355(+)$1	241	142	177	16.4666
AAGGUGCCACUCGAGGCUUCUUCUCCCUUGGAAAC	chr10:128256276-128256488(-)$1	212	65	100	14.9996
GGAGCCCUUUGAUGAUUUCUAGUUAGCGUGAGAGG	chr7:103029312-103029525(-)$1	213	162	197	20.4938
AAGCAAUGAGAAUCUUACAACUAGAGCUGAAGUUC	chr4:83816904-83817169(-)$1	265	44	79	18.2920
UCAUCCGCCAACUAAUAUUUCACUUUACAUCCAAA	chrM:9852-10078(+)$1	226	10	45	18.0999
UAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUU	chr13:92003225-92003447(+)$1	222	109	144	19.4993
UGGUGCAACUCCAAAUAAAAGUAAUAACCAUGCAC	chrM:12176-12400(+)$1	224	138	173	19.6993
GCAGAUUUAAUCAUGAAGAGAUGUACUAUCUGUCU	chr1:173835344-173835554(-)$1	210	72	107	12.0787
caaggaugacacgcaaauucgugaagcguuccaua	chr19:893479-893691(+)$1	212	71	106	15.4634
gaugggaauugaacaaugagaacacuugggucuau	chr15:72150877-72151102(+)$1	225	4	39	19.0792
AGUUUAUGUAGCUUACCUCCUCAAAGCAAUACACU	chrM:516-721(+)$1	205	61	96	14.3291
GGAGCCCUUUGAUGAUUUCUAGUUAGCGUGAGAGG	chr7:103029306-103029512(-)$1	206	149	184	20.4938
GCAGAUUUAAUCAUGAAGAGAUGUACUAUCUGUCU	chr1:173835354-173835573(-)$1	219	91	126	12.0787

#DB
.....(((((.(((............))).)))))	chr12:48416393-48416608(+)$1	1	133	168	19.6890
(((.(((...((((.........)))).))).)))	chrM:488-713(+)$1	1	89	124	14.3291
((.((..(((((((............)))))))..	chr11:106689567-106689780(-)$1	1	4	39	18.7605
((((.((((((........................	chr12:69236346-69236554(-)$1	1	149	184	17.9603
.(((((....((((((.........))))))...)	chr10:128256267-128256476(-)$1	1	53	88	14.9996
(((((.(((((.((...........))))))))))	chr6:27792114-27792355(+)$1	1	142	177	16.4666
.(((((....((((((.........))))))...)	chr10:128256276-128256488(-)$1	1	65	100	14.9996
((..((((((.(((............))).)))))	chr7:103029312-103029525(-)$1	1	162	197	20.4938
.(((.....................)))..)))))	chr4:83816904-83817169(-)$1	1	44	79	18.2920
((....(((((........................	chrM:9852-10078(+)$1	1	10	45	18.0999
((((((((((.(((...........))))))))))	chr13:92003225-92003447(+)$1	1	109	144	19.4993
))(((((.......................)))))	chrM:12176-12400(+)$1	1	138	173	19.6993
((((((.....(((......)))....))))).))	chr1:173835344-173835554(-)$1	1	72	107	12.0787
..)))(((..((((...........))))..))).	chr19:893479-893691(+)$1	1	71	106	15.4634
(((..........................))))))	chr15:72150877-72151102(+)$1	1	4	39	19.0792
(((.(((...((((.........)))).))).)))	chrM:516-721(+)$1	1	61	96	14.3291
((..((((((.(((............))).)))))	chr7:103029306-103029512(-)$1	1	149	184	20.4938
((((((.....(((......)))....))))).))	chr1:173835354-173835573(-)$1	1	91	126	12.0787

#PSSM
d : 0.38	e : 0.16	! : 0.11	$ : 0.05	f : 0.05	[ : 0.05	= : 0.05	n : 0.05	g : 0.05	
e : 0.38	d : 0.27	$ : 0.05	f : 0.05	c : 0.05	= : 0.05	n : 0.05	g : 0.05	
e : 0.33	d : 0.11	! : 0.11	c : 0.11	$ : 0.05	[ : 0.05	f : 0.05	# : 0.05	= : 0.05	g : 0.05	
e : 0.33	[ : 0.11	! : 0.11	c : 0.11	$ : 0.05	b : 0.05	f : 0.05	# : 0.05	= : 0.05	^ : 0.05	
e : 0.27	c : 0.16	f : 0.16	^ : 0.11	$ : 0.05	b : 0.05	[ : 0.05	# : 0.05	= : 0.05	
e : 0.33	c : 0.16	f : 0.16	^ : 0.11	! : 0.05	[ : 0.05	# : 0.05	= : 0.05	
e : 0.22	c : 0.16	f : 0.16	# : 0.11	^ : 0.11	$ : 0.11	! : 0.05	= : 0.05	
e : 0.16	f : 0.16	^ : 0.16	" : 0.11	# : 0.11	$ : 0.11	g : 0.05	= : 0.05	c : 0.05	
e : 0.16	f : 0.16	^ : 0.16	" : 0.11	# : 0.11	$ : 0.11	g : 0.05	= : 0.05	! : 0.05	
e : 0.16	f : 0.16	^ : 0.16	" : 0.11	# : 0.11	$ : 0.11	g : 0.05	= : 0.05	! : 0.05	
[ : 0.22	d : 0.16	f : 0.16	^ : 0.16	e : 0.11	$ : 0.11	g : 0.05	
c : 0.33	^ : 0.27	d : 0.16	f : 0.11	g : 0.05	[ : 0.05	
c : 0.33	^ : 0.27	d : 0.16	f : 0.11	g : 0.05	b : 0.05	
c : 0.33	^ : 0.27	d : 0.16	f : 0.11	g : 0.05	b : 0.05	
^ : 0.27	u : 0.22	t : 0.16	r : 0.11	f : 0.11	o : 0.11	
^ : 0.27	u : 0.22	t : 0.16	r : 0.11	f : 0.11	o : 0.11	
^ : 0.27	u : 0.22	r : 0.22	t : 0.16	o : 0.11	
^ : 0.27	u : 0.22	r : 0.22	t : 0.16	o : 0.11	
^ : 0.27	u : 0.22	r : 0.22	t : 0.16	o : 0.11	
^ : 0.27	u : 0.22	r : 0.22	t : 0.16	o : 0.11	
^ : 0.27	u : 0.22	r : 0.22	t : 0.16	c : 0.11	
^ : 0.27	u : 0.22	r : 0.22	t : 0.16	c : 0.11	
^ : 0.27	u : 0.22	r : 0.22	t : 0.16	c : 0.11	
^ : 0.27	u : 0.22	t : 0.16	d : 0.11	r : 0.11	4 : 0.11	
^ : 0.27	u : 0.22	t : 0.16	d : 0.11	r : 0.11	4 : 0.11	
u : 0.22	^ : 0.22	d : 0.16	f : 0.11	c : 0.11	4 : 0.11	b : 0.05	
c : 0.27	^ : 0.22	d : 0.16	f : 0.11	4 : 0.11	g : 0.05	b : 0.05	
c : 0.27	^ : 0.22	e : 0.16	] : 0.11	f : 0.11	g : 0.05	d : 0.05	
c : 0.27	^ : 0.22	e : 0.16	f : 0.11	g : 0.05	2 : 0.05	= : 0.05	d : 0.05	
] : 0.16	^ : 0.16	e : 0.16	c : 0.11	g : 0.11	f : 0.11	2 : 0.11	= : 0.05	
e : 0.33	f : 0.22	c : 0.11	g : 0.11	^ : 0.11	= : 0.05	2 : 0.05	
e : 0.33	] : 0.11	g : 0.11	^ : 0.11	3 : 0.11	f : 0.11	= : 0.05	c : 0.05	
e : 0.16	f : 0.16	d : 0.11	g : 0.11	^ : 0.11	3 : 0.11	] : 0.11	= : 0.05	c : 0.05	
d : 0.22	e : 0.16	f : 0.16	^ : 0.11	3 : 0.11	2 : 0.05	= : 0.05	c : 0.05	g : 0.05	
e : 0.27	d : 0.22	f : 0.16	^ : 0.11	2 : 0.05	= : 0.05	: : 0.05	g : 0.05	

#score	306.813024633111
#seq	18
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF233ZXV_DHX30_transcript_m1_run2.txt

#BEAR
iiiiiiivvvvvvvvvvvvviiiiiiiii	chr20:24944195-24944436(-)$1	241	66	95	28.4048
bb!!cccyyyyyyyyyyyyyyyyccc]bb	chr1:567833-568072(+)$1	239	134	163	21.3697
=======vvvvvvvvvvvvv=========	chrM:1287-1491(+)$1	204	52	81	29.6683
========uuuuuuuuuuuu=========	chr14:32954003-32954250(+)$1	247	145	174	27.6510
!!ffffffuuuuuuuuuuuuffffff555	chrM:8024-8253(+)$1	229	46	75	21.3981
=======vvvvvvvvvvvvv=========	chrM:1248-1450(+)$1	202	91	120	29.6683
=======vvvvvvvvvvvvv=========	chrM:1227-1432(+)$1	205	112	141	29.6683
!!ffffffuuuuuuuuuuuuffffff555	chrM:7958-8185(+)$1	227	112	141	21.3981
=======vvvvvvvvvvvvv=========	chrM:1179-1384(+)$1	205	160	189	29.6683
ddd!!bbtttttttttttbb22dddd333	chrM:611-816(+)$1	205	24	53	22.2748
=======vvvvvvvvvvvvv=========	chrM:1232-1444(+)$1	212	107	136	29.6683
eeee[cccuuuuuuuuuuuuccc]eeeee	chr12:48416393-48416608(+)$1	215	139	168	23.1490
gggggggvvvvvvvvvvvvvggggggg:B	chrM:5917-6152(+)$1	235	131	160	25.0426
eee[ccc^^^^^^^^^^^^^^^^^^^ccc	chr11:2150970-2151201(-)$1	231	139	168	19.1390
=======vvvvvvvvvvvvv=========	chrM:1285-1487(+)$1	202	54	83	29.6683
ddd!!bbtttttttttttbb22dddd333	chrM:628-833(+)$1	205	7	36	22.2748
=========ttttttttttt=========	chr11:2151084-2151301(-)$1	217	30	59	25.8581
iiiiiiiyyyyyyyyyyyyyyyyiiiiii	chr1:567124-567364(+)$1	240	52	81	24.1229
gggggggxxxxxxxxxxxxxxxggggggg	chr2:239147267-239147563(-)$1	296	135	164	19.0925
eee[ccc^^^^^^^^^^^^^^^^^^^ccc	chr11:2150881-2151092(-)$1	211	30	59	19.1390
ffffffwwwwwwwwwwwwwwffffff:cc	chr16:3421875-3422132(-)$1	257	13	42	22.0401
fffffffwwwwwwwwwwwwwwffffff::	chr11:618790-619005(-)$1	215	31	60	21.4338
=======vvvvvvvvvvvvv=========	chrM:1253-1459(+)$1	206	86	115	29.6683
=======vvvvvvvvvvvvv=========	chrM:1291-1500(+)$1	209	48	77	29.6683
d[eeeeevvvvvvvvvvvvveeeeedddd	chrM:1151-1363(+)$1	212	29	58	23.9955
=======vvvvvvvvvvvvv=========	chrM:1174-1379(+)$1	205	165	194	29.6683
=========ttttttttttt=========	chr11:2151067-2151284(-)$1	217	13	42	25.8581
=======vvvvvvvvvvvvv=========	chrM:1259-1464(+)$1	205	80	109	29.6683
ddd!!bbtttttttttttbb22dddd333	chrM:586-794(+)$1	208	49	78	22.2748
=======vvvvvvvvvvvvv=========	chrM:1264-1468(+)$1	204	75	104	29.6683
ddd!!bbtttttttttttbb22dddd333	chrM:603-806(+)$1	203	32	61	22.2748
ddd!!bbtttttttttttbb22dddd333	chrM:619-828(+)$1	209	16	45	22.2748
:ffffffvvvvvvvvvvvvvffffffeee	chrM:3135-3378(+)$1	243	197	226	23.2226
=======vvvvvvvvvvvvv=========	chrM:1300-1504(+)$1	204	39	68	29.6683
eee[ccc^^^^^^^^^^^^^^^^^^^ccc	chr11:2151001-2151212(-)$1	211	150	179	19.1390
ddd!!bbtttttttttttbb22dddd333	chrM:596-803(+)$1	207	39	68	22.2748
=======vvvvvvvvvvvvv=========	chrM:1268-1479(+)$1	211	71	100	29.6683
=======vvvvvvvvvvvvv=========	chrM:1316-1531(+)$1	215	23	52	29.6683
hh[ddddyyyyyyyyyyyyyyyydddd]h	chrM:10328-10552(+)$1	224	171	200	20.1079
=======vvvvvvvvvvvvv=========	chrM:1279-1485(+)$1	206	60	89	29.6683
=======vvvvvvvvvvvvv=========	chrM:1166-1374(+)$1	208	173	202	29.6683
eee[ccc^^^^^^^^^^^^^^^^^^^ccc	chr11:2150892-2151098(-)$1	206	36	65	19.1390
!!ffffffuuuuuuuuuuuuffffff555	chrM:8053-8270(+)$1	217	17	46	21.3981
=======wwwwwwwwwwwwww========	chr1:77436808-77437047(+)$1	239	66	95	28.0229
eee[ccc^^^^^^^^^^^^^^^^^^^ccc	chr11:2150863-2151081(-)$1	218	19	48	19.1390
=======vvvvvvvvvvvvv=========	chrM:1244-1448(+)$1	204	95	124	29.6683
gggggggvvvvvvvvvvvvvggggggg33	chr11:62285830-62286077(-)$1	247	136	165	27.3532
eee[ccc^^^^^^^^^^^^^^^^^^^ccc	chr11:2150954-2151164(-)$1	210	102	131	19.1390
gggggggvvvvvvvvvvvvvggggggg::	chrM:5912-6117(+)$1	205	136	165	24.9793

#otherMatches

#Seq PSSM
UGGACACAGUCGUGGUUCAAGUGUCCACA	chr20:24944195-24944436(-)$1	241	66	95	28.4048
UCGAAGAACCCGUAUACAUAAAAUCUAGA	chr1:567833-568072(+)$1	239	134	163	21.3697
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1287-1491(+)$1	204	52	81	29.6683
CUCCCGCCUUUUUUUCCUGCGGCGGGAGA	chr14:32954003-32954250(+)$1	247	145	174	27.6510
CAUGAGCUGUCCCCACAUUAGGCUUAAAA	chrM:8024-8253(+)$1	229	46	75	21.3981
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1248-1450(+)$1	202	91	120	29.6683
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1227-1432(+)$1	205	112	141	29.6683
CAUGAGCUGUCCCCACAUUAGGCUUAAAA	chrM:7958-8185(+)$1	227	112	141	21.3981
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1179-1384(+)$1	205	160	189	29.6683
UCACCCCAUAAACAAAUAGGUUUGGUCCU	chrM:611-816(+)$1	205	24	53	22.2748
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1232-1444(+)$1	212	107	136	29.6683
UGCCUGGUCAGUGUUUGAAAGCCUGGCAA	chr12:48416393-48416608(+)$1	215	139	168	23.1490
GGUAACGACCACAUCUACAACGUUAUCGU	chrM:5917-6152(+)$1	235	131	160	25.0426
GGGAGGUUUACCUCGCCCCCACUUGUGCC	chr11:2150970-2151201(-)$1	231	139	168	19.1390
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1285-1487(+)$1	202	54	83	29.6683
UCACCCCAUAAACAAAUAGGUUUGGUCCU	chrM:628-833(+)$1	205	7	36	22.2748
AGGAGGUCCGAAGCUCUGUGGGACCUCUU	chr11:2151084-2151301(-)$1	217	30	59	25.8581
GAAGUUUAUAUUCUCAUCCUACCAGGCUU	chr1:567124-567364(+)$1	240	52	81	24.1229
UCCCUGGAUCUCCUCCCUCCUCCCAGGGG	chr2:239147267-239147563(-)$1	296	135	164	19.0925
GGGAGGUUUACCUCGCCCCCACUUGUGCC	chr11:2150881-2151092(-)$1	211	30	59	19.1390
UAUACCAUUAAUCCAACACAGGUAUGCUC	chr16:3421875-3422132(-)$1	257	13	42	22.0401
UCCCACCAACCAGCCACUCCCGGUGGGGA	chr11:618790-619005(-)$1	215	31	60	21.4338
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1253-1459(+)$1	206	86	115	29.6683
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1291-1500(+)$1	209	48	77	29.6683
GUGCUUCAUAUCCCUCUAGAGGAGCCUGU	chrM:1151-1363(+)$1	212	29	58	23.9955
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1174-1379(+)$1	205	165	194	29.6683
AGGAGGUCCGAAGCUCUGUGGGACCUCUU	chr11:2151067-2151284(-)$1	217	13	42	25.8581
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1259-1464(+)$1	205	80	109	29.6683
UCACCCCAUAAACAAAUAGGUUUGGUCCU	chrM:586-794(+)$1	208	49	78	22.2748
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1264-1468(+)$1	204	75	104	29.6683
UCACCCCAUAAACAAAUAGGUUUGGUCCU	chrM:603-806(+)$1	203	32	61	22.2748
UCACCCCAUAAACAAAUAGGUUUGGUCCU	chrM:619-828(+)$1	209	16	45	22.2748
UCAUUGUACCCAUUCUAAUCGCAAUGGCA	chrM:3135-3378(+)$1	243	197	226	23.2226
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1300-1504(+)$1	204	39	68	29.6683
GGGAGGUUUACCUCGCCCCCACUUGUGCC	chr11:2151001-2151212(-)$1	211	150	179	19.1390
UCACCCCAUAAACAAAUAGGUUUGGUCCU	chrM:596-803(+)$1	207	39	68	22.2748
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1268-1479(+)$1	211	71	100	29.6683
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1316-1531(+)$1	215	23	52	29.6683
AGCAUUUACCAUCUCACUUCUAGGAAUAC	chrM:10328-10552(+)$1	224	171	200	20.1079
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1279-1485(+)$1	206	60	89	29.6683
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1166-1374(+)$1	208	173	202	29.6683
GGGAGGUUUACCUCGCCCCCACUUGUGCC	chr11:2150892-2151098(-)$1	206	36	65	19.1390
CAUGAGCUGUCCCCACAUUAGGCUUAAAA	chrM:8053-8270(+)$1	217	17	46	21.3981
AUAUUUGCAAAAUUAAAAAAUUAAAUGUU	chr1:77436808-77437047(+)$1	239	66	95	28.0229
GGGAGGUUUACCUCGCCCCCACUUGUGCC	chr11:2150863-2151081(-)$1	218	19	48	19.1390
AGCCCAUGAGGUGGCAAGAAAUGGGCUAC	chrM:1244-1448(+)$1	204	95	124	29.6683
UGCAUCUGUUCCCAGCAUGAAGGUGCAUG	chr11:62285830-62286077(-)$1	247	136	165	27.3532
GGGAGGUUUACCUCGCCCCCACUUGUGCC	chr11:2150954-2151164(-)$1	210	102	131	19.1390
GGUAACGACCACAUCUACAACGUUAUCGU	chrM:5912-6117(+)$1	205	136	165	24.9793

#DB
(((((((.............)))))))))	chr20:24944195-24944436(-)$1	1	66	95	28.4048
((..(((................))).))	chr1:567833-568072(+)$1	1	134	163	21.3697
(((((((.............)))))))))	chrM:1287-1491(+)$1	1	52	81	29.6683
((((((((............)))))))))	chr14:32954003-32954250(+)$1	1	145	174	27.6510
..((((((............))))))...	chrM:8024-8253(+)$1	1	46	75	21.3981
(((((((.............)))))))))	chrM:1248-1450(+)$1	1	91	120	29.6683
(((((((.............)))))))))	chrM:1227-1432(+)$1	1	112	141	29.6683
..((((((............))))))...	chrM:7958-8185(+)$1	1	112	141	21.3981
(((((((.............)))))))))	chrM:1179-1384(+)$1	1	160	189	29.6683
(((..((...........))..))))...	chrM:611-816(+)$1	1	24	53	22.2748
(((((((.............)))))))))	chrM:1232-1444(+)$1	1	107	136	29.6683
((((.(((............))).)))))	chr12:48416393-48416608(+)$1	1	139	168	23.1490
(((((((.............))))))).)	chrM:5917-6152(+)$1	1	131	160	25.0426
(((.(((...................)))	chr11:2150970-2151201(-)$1	1	139	168	19.1390
(((((((.............)))))))))	chrM:1285-1487(+)$1	1	54	83	29.6683
(((..((...........))..))))...	chrM:628-833(+)$1	1	7	36	22.2748
(((((((((...........)))))))))	chr11:2151084-2151301(-)$1	1	30	59	25.8581
(((((((................))))))	chr1:567124-567364(+)$1	1	52	81	24.1229
(((((((...............)))))))	chr2:239147267-239147563(-)$1	1	135	164	19.0925
(((.(((...................)))	chr11:2150881-2151092(-)$1	1	30	59	19.1390
((((((..............)))))).((	chr16:3421875-3422132(-)$1	1	13	42	22.0401
)((((((..............))))))..	chr11:618790-619005(-)$1	1	31	60	21.4338
(((((((.............)))))))))	chrM:1253-1459(+)$1	1	86	115	29.6683
(((((((.............)))))))))	chrM:1291-1500(+)$1	1	48	77	29.6683
(.(((((.............)))))))))	chrM:1151-1363(+)$1	1	29	58	23.9955
(((((((.............)))))))))	chrM:1174-1379(+)$1	1	165	194	29.6683
(((((((((...........)))))))))	chr11:2151067-2151284(-)$1	1	13	42	25.8581
(((((((.............)))))))))	chrM:1259-1464(+)$1	1	80	109	29.6683
(((..((...........))..))))...	chrM:586-794(+)$1	1	49	78	22.2748
(((((((.............)))))))))	chrM:1264-1468(+)$1	1	75	104	29.6683
(((..((...........))..))))...	chrM:603-806(+)$1	1	32	61	22.2748
(((..((...........))..))))...	chrM:619-828(+)$1	1	16	45	22.2748
.((((((.............))))))(((	chrM:3135-3378(+)$1	1	197	226	23.2226
(((((((.............)))))))))	chrM:1300-1504(+)$1	1	39	68	29.6683
(((.(((...................)))	chr11:2151001-2151212(-)$1	1	150	179	19.1390
(((..((...........))..))))...	chrM:596-803(+)$1	1	39	68	22.2748
(((((((.............)))))))))	chrM:1268-1479(+)$1	1	71	100	29.6683
(((((((.............)))))))))	chrM:1316-1531(+)$1	1	23	52	29.6683
((.((((................)))).)	chrM:10328-10552(+)$1	1	171	200	20.1079
(((((((.............)))))))))	chrM:1279-1485(+)$1	1	60	89	29.6683
(((((((.............)))))))))	chrM:1166-1374(+)$1	1	173	202	29.6683
(((.(((...................)))	chr11:2150892-2151098(-)$1	1	36	65	19.1390
..((((((............))))))...	chrM:8053-8270(+)$1	1	17	46	21.3981
(((((((..............))))))))	chr1:77436808-77437047(+)$1	1	66	95	28.0229
(((.(((...................)))	chr11:2150863-2151081(-)$1	1	19	48	19.1390
(((((((.............)))))))))	chrM:1244-1448(+)$1	1	95	124	29.6683
(((((((.............)))))))..	chr11:62285830-62286077(-)$1	1	136	165	27.3532
(((.(((...................)))	chr11:2150954-2151164(-)$1	1	102	131	19.1390
(((((((.............)))))))..	chrM:5912-6117(+)$1	1	136	165	24.9793

#PSSM
= : 0.42	d : 0.14	e : 0.14	g : 0.08	! : 0.06	i : 0.04	f : 0.04	b : 0.02	: : 0.02	h : 0.02	
= : 0.42	e : 0.14	d : 0.12	g : 0.08	! : 0.06	f : 0.06	i : 0.04	b : 0.02	[ : 0.02	h : 0.02	
= : 0.42	e : 0.16	f : 0.12	d : 0.12	g : 0.08	i : 0.04	! : 0.02	[ : 0.02	
= : 0.42	! : 0.14	f : 0.12	[ : 0.12	g : 0.08	i : 0.04	e : 0.04	d : 0.02	
= : 0.42	c : 0.14	f : 0.12	! : 0.12	g : 0.08	i : 0.04	[ : 0.02	e : 0.02	d : 0.02	
= : 0.42	c : 0.16	f : 0.12	b : 0.12	g : 0.08	i : 0.04	e : 0.02	d : 0.02	
= : 0.42	c : 0.16	b : 0.12	f : 0.10	g : 0.08	i : 0.04	w : 0.02	e : 0.02	d : 0.02	
v : 0.46	t : 0.12	^ : 0.12	y : 0.06	= : 0.06	f : 0.06	w : 0.06	c : 0.02	x : 0.02	
v : 0.46	t : 0.12	^ : 0.12	u : 0.10	y : 0.06	w : 0.06	= : 0.04	x : 0.02	
v : 0.46	t : 0.16	^ : 0.12	u : 0.10	y : 0.06	w : 0.06	x : 0.02	
v : 0.46	t : 0.16	^ : 0.12	u : 0.10	y : 0.06	w : 0.06	x : 0.02	
v : 0.46	t : 0.16	^ : 0.12	u : 0.10	y : 0.06	w : 0.06	x : 0.02	
v : 0.46	t : 0.16	^ : 0.12	u : 0.10	y : 0.06	w : 0.06	x : 0.02	
v : 0.46	t : 0.16	^ : 0.12	u : 0.10	y : 0.06	w : 0.06	x : 0.02	
v : 0.46	t : 0.16	^ : 0.12	u : 0.10	y : 0.06	w : 0.06	x : 0.02	
v : 0.46	t : 0.16	^ : 0.12	u : 0.10	y : 0.06	w : 0.06	x : 0.02	
v : 0.46	t : 0.16	^ : 0.12	u : 0.10	y : 0.06	w : 0.06	x : 0.02	
v : 0.46	t : 0.16	^ : 0.12	u : 0.10	y : 0.06	w : 0.06	x : 0.02	
v : 0.46	b : 0.12	^ : 0.12	u : 0.10	y : 0.06	w : 0.06	t : 0.04	x : 0.02	
v : 0.46	b : 0.12	^ : 0.12	u : 0.10	y : 0.06	w : 0.06	t : 0.04	x : 0.02	
= : 0.40	2 : 0.12	^ : 0.12	f : 0.10	y : 0.06	g : 0.06	w : 0.04	i : 0.02	c : 0.02	x : 0.02	e : 0.02	
= : 0.42	f : 0.12	2 : 0.12	^ : 0.12	y : 0.06	g : 0.06	i : 0.02	c : 0.02	x : 0.02	e : 0.02	
= : 0.42	f : 0.12	d : 0.12	^ : 0.12	g : 0.08	y : 0.06	i : 0.02	c : 0.02	e : 0.02	
= : 0.42	d : 0.14	f : 0.12	^ : 0.12	g : 0.08	i : 0.04	c : 0.02	] : 0.02	e : 0.02	
= : 0.42	d : 0.14	f : 0.12	^ : 0.12	g : 0.08	i : 0.04	e : 0.04	c : 0.02	
= : 0.42	d : 0.16	f : 0.12	^ : 0.12	g : 0.08	i : 0.04	c : 0.02	e : 0.02	
= : 0.42	3 : 0.12	c : 0.12	g : 0.08	5 : 0.06	i : 0.04	e : 0.04	d : 0.04	] : 0.02	: : 0.02	f : 0.02	
= : 0.42	3 : 0.14	c : 0.14	5 : 0.06	: : 0.06	i : 0.04	e : 0.04	b : 0.02	g : 0.02	d : 0.02	] : 0.02	
= : 0.42	3 : 0.14	c : 0.14	5 : 0.06	i : 0.04	e : 0.04	: : 0.04	b : 0.02	B : 0.02	g : 0.02	d : 0.02	h : 0.02	

#score	1228.7437738652789
#seq	49
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_transcript_m1_run1.txt

#BEAR
accc"""cccccc"""bboooooobb22ccc]ccc]ccc]	chr9:139886990-139887244(+)$1	254	70	110	16.5752
===========####ddddmmmmdddd22===========	chr7:100804267-100804512(+)$1	245	101	141	16.6779
)bb[ffffffdddd[cccooooooccc]dddd333fffff	chr19:11663893-11664167(-)$1	274	143	183	14.0788
c[ccc[bb[a[ccc[cccooooooccc]ccc]abbccc]c	chr14:23389958-23390265(-)$1	307	29	69	16.7020
b!!ggggggg[a"""ddddmmmmdddd333aggggggg22	chrX:152961798-152962014(+)$1	216	126	166	15.3738
ggg"""a[a!!iiiiiiiiimmmmiiiiiiiii22a]a33	chr1:47843806-47844035(+)$1	229	144	184	14.1617
hhhhhhhh"""ddddcccooooooccc]dddd333hhhhh	chr8:145161638-145161865(+)$1	227	41	81	14.6709
dd"""dddd"""dddd!!ccclllccc333dddd333ddd	chr6:16266179-16266426(+)$1	247	169	209	12.6297
ff===========####bbmmmmbb===========22ff	chr17:27941169-27941435(+)$1	266	29	69	14.4779
==============[cccmmmmccc==============a	chr19:49653659-49653927(+)$1	268	222	262	16.3091
!!ccc"""dddd"""cccooooooccc333dddd333ccc	chr10:58117426-58117705(-)$1	279	81	121	19.1840
[ggggggg[bbdddd[bboooooobb]dddd4444bb]gg	chr20:2443181-2443420(-)$1	239	184	224	14.5099
!a!!ccc!!ccc[arrrrrrrrra]ccc22ccc22a]ccc	chr1:880334-880585(-)$1	251	76	116	12.8525
====================mmmm================	chr16:29821892-29822128(+)$1	236	87	127	16.4311
c[ccc"""eeeee!!ddddmmmmdddd22eeeee333ccc	chr2:232673143-232673414(+)$1	271	52	92	12.8063
:ggggggg####ffffffooooooffffff4444gggggg	chr8:101734018-101734236(-)$1	218	46	86	14.7147
iiiiiiiii[a[a[ddddoooooodddd]aaiiiiiiiii	chr11:67817857-67818127(+)$1	270	151	191	17.6595
ggggggg####ffffffooooooffffff4444ggggggg	chr8:101734015-101734218(-)$1	203	29	69	14.6205
[a[ggggggg"""bb[cccnnnnncccbb]ggggggg]a]	chrX:153906239-153906480(-)$1	241	29	69	13.8827
dd[bb[bb[bbccc[cccoooooocccccc]bb]bb4444	chr9:139566432-139566640(+)$1	208	42	82	15.1250
c[a"""cccdddd[cccrrrrrrrrrccc]dddd22ccc3	chr19:1577415-1577659(-)$1	244	182	222	12.0907
"""dddd"""bb[eeeeeooooooeeeeebbdddd22===	chr19:42409269-42409515(+)$1	246	45	85	13.5781
%%============ddddnnnnndddd22===========	chr16:67862284-67862572(-)$1	288	96	136	14.8852
%%%===========[cccooooooccc]===========]	chr11:61641159-61641418(-)$1	259	15	55	18.8672
fff=========="""cccooooooccc333=========	chr19:50372358-50372622(-)$1	264	223	263	19.4348
dd[dddd!!ccc"""ddddllldddd4444ccc22ddddd	chr12:6857220-6857458(-)$1	238	43	83	13.0875
fff:iiiiiiiii"""bboooooobbiiiiiiiiicccoo	chr6:31526032-31526341(+)$1	309	164	204	15.5061
hhhhhhh!!ddddbbcccooooooccc]bb]dddd4444h	chr11:67378563-67378778(+)$1	215	32	72	14.0219
:dddd####a[a!!acccooooooccc]a22a]a22dddd	chr3:48481718-48481939(+)$1	221	118	158	16.5967
b!!gggggggbb"""ccc[bblllbb]ccc4444bb]ggg	chr1:155112557-155112791(-)$1	234	124	164	13.6213
####bb!!bb[a[ccc[aooooooa]ccc]a333bb4444	chr19:7684538-7684793(-)$1	255	121	161	16.5213
[bb[dddd"""bb[ddddoooooodddd333bb333dddd	chr11:62482314-62482638(-)$1	324	227	267	15.6558
========dddd"""cccoooooocccdddd]========	chr9:130925792-130926067(+)$1	275	25	65	18.8369
ggggg[a[ccc!!ccc[aooooooaccccccaggggggg>	chr19:12841737-12841981(-)$1	244	163	203	17.1223
::===========bb[bboooooobb]bb4444=======	chr1:2125389-2125686(-)$1	297	161	201	15.8767
:ggggggg!!bb[a[cccooooooccc]abbggggggg::	chr3:47892154-47892410(-)$1	256	9	49	15.0035
ddd[ccc####a"""cccnnnnnccc22a4444ccc]ddd	chr19:3062207-3062463(-)$1	256	96	136	14.9308
[dddd####gggggggddddllldddd333gggggggddd	chr16:67471941-67472234(-)$1	293	167	207	13.0294
gggbb[ccc[ccc!!bb!!aooooooa22bbccc]ccc33	chr6:33171654-33171916(+)$1	262	17	57	14.0783
bb!!dddd[bb!!ccc[bboooooobb]ccc]bb333ddd	chr19:8576418-8576686(-)$1	268	105	145	14.1373
eeee####ffffff[cccooooooccc]ffffff22eeee	chr19:19388435-19388723(-)$1	288	179	219	14.5606
bb[ggggggg$$$$$cccooooooccc22ggggggg]bb:	chr3:50367775-50368059(-)$1	284	120	160	15.9930
iiii####ccc"""ddddoooooodddd333ccc22iiii	chr5:137891107-137891349(-)$1	242	110	150	18.4321
b[dddd[ccc[bb!!cccooooooccc]bb]ccc]dddd]	chr12:56552042-56552278(+)$1	236	123	163	16.0069
gggg[ccc!!bb"""ccclllccc22bb]cccggggggg]	chr6:33258019-33258305(+)$1	286	131	171	13.0178
================[bbmmmmbb]==============	chr6:34555429-34555651(-)$1	222	58	98	15.5464
hhhh!!dddd[a"""cccooooooccc4444a]dddd22h	chr11:126072928-126073192(-)$1	264	21	61	16.6263
ee[==========####bbnnnnnbb333==========e	chr1:900620-900870(+)$1	250	159	199	16.3541
ggggg"""bb[dddd[bboooooobbdddd]bb22ggggg	chr4:1810303-1810587(+)$1	284	133	173	14.8623
####bb[iiiiiiiii[aooooooa]iiiiiiiii]bb22	chr5:139062838-139063106(+)$1	268	192	232	16.2712
========[eeeeeddddoooooodddd>>>>>>>>>>>>	chr11:770796-770998(-)$1	202	9	49	13.9415
b!!ffffff!!a"""ddddmmmmdddd333a]ffffff22	chr7:128498809-128499070(+)$1	261	38	78	13.2183

#otherMatches

#Seq PSSM
GCGGCCCCGCCUGACAGGCCUUCUCCCCCAGCGUGACCGA	chr9:139886990-139887244(+)$1	254	70	110	16.5752
UUUCUAACCUUGCCACUUUGAGGGAAGGAAGGGUUGGGGG	chr7:100804267-100804512(+)$1	245	101	141	16.6779
CGCCGUUCCCCAGGUCCCUGGGCUGGGCCCUGACAGGGAG	chr19:11663893-11664167(-)$1	274	143	183	14.0788
CAUCUGUGUGCGUUUCUGGCGAUGCAGCAAUUCCAAGAAG	chr14:23389958-23390265(-)$1	307	29	69	16.7020
CGACACCCAGACAGAGGCUGCAGGGCUGGGGCUGGGUGAG	chrX:152961798-152962014(+)$1	216	126	166	15.3738
UUUCUUGGAAGAGAUAGGAAUGAGUUCUUAUCUAGUGUUG	chr1:47843806-47844035(+)$1	229	144	184	14.1617
GGGGCCAGCAGCAGGCCUGGGUAGGGGUCCUGAAACUGGU	chr8:145161638-145161865(+)$1	227	41	81	14.6709
gagcuguaacacuugccaucuuuaagagcuguaacacuug	chr6:16266179-16266426(+)$1	247	169	209	12.6297
GGUUCCAGCUUCUCCUUGGGCAGCCAGAAGUUGGAGUCCC	chr17:27941169-27941435(+)$1	266	29	69	14.4779
AGUCUUCCUUCUUCGUCCGAAAGGAGGGGAGGGGGGACUC	chr19:49653659-49653927(+)$1	268	222	262	16.3091
GGUGGUUAUAUGUGGGAAGAUAAUUUUAUUCAUGGAUCCA	chr10:58117426-58117705(-)$1	279	81	121	19.1840
GUGGGAUAGGAAAUGGAGGGAAGAUUGCAUUUAGAUCAUA	chr20:2443181-2443420(-)$1	239	184	224	14.5099
AGCACUCGGCAUgggguggaagacgaugaagaggacgagg	chr1:880334-880585(-)$1	251	76	116	12.8525
UUCCUUUUUUUUUUUUUUCCAGGGGGAGGGAGGAGAGGAA	chr16:29821892-29822128(+)$1	236	87	127	16.4311
CUGCACCUGGGUAGGGAUGGUGGCAUCGAUGCCCCUCUGU	chr2:232673143-232673414(+)$1	271	52	92	12.8063
CAAAAAAUCCGCGUCUCCCCCGCCGGAGACUUUUAUUUUU	chr8:101734018-101734236(-)$1	218	46	86	14.7147
GGAGGUGGGCGUGGCGGCUGUGGUGCUGGUCCCCAUCUUU	chr11:67817857-67818127(+)$1	270	151	191	17.6595
AAAAAAUCCGCGUCUCCCCCGCCGGAGACUUUUAUUUUUU	chr8:101734015-101734218(-)$1	203	29	69	14.6205
GUGCGGGCUUGUGCCAUGUGUGAAACAGGGAAGCUUGGGG	chrX:153906239-153906480(-)$1	241	29	69	13.8827
AGCAGCUCGGCCGCAUCGACUCCCUGAGCGAGCAGAUUUC	chr9:139566432-139566640(+)$1	208	42	82	15.1250
UCGCCCGGCGCUGCCAGAAUGCUCCACUGCCAGCCGGCCC	chr19:1577415-1577659(-)$1	244	182	222	12.0907
CUUUCUCCCCAGCUGGUGUGCUCUCAUCACUGAGACUGCC	chr19:42409269-42409515(+)$1	246	45	85	13.5781
AUAAAUAUUUCCAGCAUCUUUGUGAUGAUCUGGAGGUAUU	chr16:67862284-67862572(-)$1	288	96	136	14.8852
CAGGGGUGUUAGGAUCUUGCAACUGAGCUCCUAACACCCA	chr11:61641159-61641418(-)$1	259	15	55	18.8672
GGCCCUCACUCUCCGGCCCUGGUGUGGGGGAGAGAGUGAG	chr19:50372358-50372622(-)$1	264	223	263	19.4348
GUGAGCUCUGGGUUUAGGGGCCCCCUCCAUCCCUCAGCUA	chr12:6857220-6857458(-)$1	238	43	83	13.0875
GCCAGGGGCCCCCCUUUGGAGGAACAGGGGGCUCUGAGGA	chr6:31526032-31526341(+)$1	309	164	204	15.5061
CAUCUCUGGCCAUGUCAACCACCCUUGCACUGUGGAGGAG	chr11:67378563-67378778(+)$1	215	32	72	14.0219
AGCCCAAGAAGCAGGCCAAGGAGAUGGACgaggugagggc	chr3:48481718-48481939(+)$1	221	118	158	16.5967
CCUGGGUGGCCCUGACCACGGGAGCCUUGGGCCUGGAGCU	chr1:155112557-155112791(-)$1	234	124	164	13.6213
GAGGACGAGGACGAGGACGAGAUGGACCUGGAGCCCAACG	chr19:7684538-7684793(-)$1	255	121	161	16.5213
GACAUUCUGAGGCAGCUGGACUGGCAGCCAAGUAAAGGAG	chr11:62482314-62482638(-)$1	324	227	267	15.6558
UGCUGGAGUCCAACCGGCAGACACGCCUGGAGUUCCAGCA	chr9:130925792-130926067(+)$1	275	25	65	18.8369
ACCAGUGCGGUGACGAUGAUAAAACUCGGCCCCUGGUGAA	chr19:12841737-12841981(-)$1	244	163	203	17.1223
AGCGGCUCUGGGCCGAGCUACUGCGCACGGUGAGCCCGGA	chr1:2125389-2125686(-)$1	297	161	201	15.8767
AGGAGUGGUCAGAGUUCCCUCAAAGGAUCCUCCACUCCAG	chr3:47892154-47892410(-)$1	256	9	49	15.0035
cgcgcggggagggggcgcaggaagcgggcgaggccgggcg	chr19:3062207-3062463(-)$1	256	96	136	14.9308
cucccuucuguGGGUCGCUCCCAGAGCCAUGGCCCAUGGG	chr16:67471941-67472234(-)$1	293	167	207	13.0294
GGGACAUCUGCCAAAGGAAGGAACUGUAGCCUGGGAGAAU	chr6:33171654-33171916(+)$1	262	17	57	14.0783
GCCCCCCGCGCCUGCGCCCCUUCCUGGCCGCUGCACCCGG	chr19:8576418-8576686(-)$1	268	105	145	14.1373
AAGUGAGUGUGGCCUUGUGGGAGGGCAUGGCCAUGAACUU	chr19:19388435-19388723(-)$1	288	179	219	14.5606
AGUGGGGCCUGUGGAAUGAGUGUGCAUGGAGGCCCUCCUG	chr3:50367775-50368059(-)$1	284	120	160	15.9930
AUGGGGCAGAGGAAUCUAGAACAAUGGGAAACUUAGCUAU	chr5:137891107-137891349(-)$1	242	110	150	18.4321
CGGAGAGCUGAGCAGUCAAGAUGGUGGGGCCCAGGUCUUG	chr12:56552042-56552278(+)$1	236	123	163	16.0069
CCGGUGCUAGUCAAACAGGAGCUGGGGGAGGCUCGGGCCA	chr6:33258019-33258305(+)$1	286	131	171	13.0178
GAGGUGUGUGUGUGUGGAUGGAUGUGCACGUGUGCAUGCU	chr6:34555429-34555651(-)$1	222	58	98	15.5464
AGCCAGGUGGGAUAAGGUAAAGCAACUCAGCUGCUACAGG	chr11:126072928-126073192(-)$1	264	21	61	16.6263
CUGCGUGUCCUCCCCUCCACUGCCUGCAUGGGGGGCGCGG	chr1:900620-900870(+)$1	250	159	199	16.3541
UGGGCAGCUGUCCCUUGCUUGCCUGCAGGGCCAUGGCUCA	chr4:1810303-1810587(+)$1	284	133	173	14.8623
AGAAGCCGCUCUGUAUCCAUCCACGCGUGCAGAGCUGCCA	chr5:139062838-139063106(+)$1	268	192	232	16.2712
AGGGCACCAGGGUGGGCACAUUCCUGCCACAUCAGAGCUG	chr11:770796-770998(-)$1	202	9	49	13.9415
CAAGGGGCUGGCGAGGGCUGCGAGGCCAGGGAAGCCCUGA	chr7:128498809-128499070(+)$1	261	38	78	13.2183

#DB
((((...((((((...((......))..))).))).))).	chr9:139886990-139887244(+)$1	1	70	110	16.5752
(((((((((((....((((....))))..)))))))))))	chr7:100804267-100804512(+)$1	1	101	141	16.6779
.((.((((((((((.(((......))).))))...)))))	chr19:11663893-11664167(-)$1	1	143	183	14.0788
(.(((.((.(.(((.(((......))).))).)))))).)	chr14:23389958-23390265(-)$1	1	29	69	16.7020
(..(((((((.(...((((....))))...))))))))..	chrX:152961798-152962014(+)$1	1	126	166	15.3738
(((...(.(..(((((((((....)))))))))..).)..	chr1:47843806-47844035(+)$1	1	144	184	14.1617
((((((((...(((((((......))).))))...)))))	chr8:145161638-145161865(+)$1	1	41	81	14.6709
((...((((...((((..(((...)))...))))...)))	chr6:16266179-16266426(+)$1	1	169	209	12.6297
(((((((((((((....((....)))))))))))))..))	chr17:27941169-27941435(+)$1	1	29	69	14.4779
((((((((((((((.(((....))))))))))))))))))	chr19:49653659-49653927(+)$1	1	222	262	16.3091
..(((...((((...(((......)))...))))...)))	chr10:58117426-58117705(-)$1	1	81	121	19.1840
.(((((((.((((((.((......)).))))....)).))	chr20:2443181-2443420(-)$1	1	184	224	14.5099
.(..(((..(((.(.........).)))..)))..).)))	chr1:880334-880585(-)$1	1	76	116	12.8525
((((((((((((((((((((....))))))))))))))))	chr16:29821892-29822128(+)$1	1	87	127	16.4311
(.(((...(((((..((((....))))..)))))...)))	chr2:232673143-232673414(+)$1	1	52	92	12.8063
.(((((((....((((((......))))))....))))))	chr8:101734018-101734236(-)$1	1	46	86	14.7147
(((((((((.(.(.((((......)))).)))))))))))	chr11:67817857-67818127(+)$1	1	151	191	17.6595
(((((((....((((((......))))))....)))))))	chr8:101734015-101734218(-)$1	1	29	69	14.6205
.(.(((((((...((.(((.....))))).))))))).).	chrX:153906239-153906480(-)$1	1	29	69	13.8827
((.((.((.(((((.(((......)))))).)).))....	chr9:139566432-139566640(+)$1	1	42	82	15.1250
(.(...(((((((.(((.........))).))))..))).	chr19:1577415-1577659(-)$1	1	182	222	12.0907
...((((...((.(((((......)))))))))))..)))	chr19:42409269-42409515(+)$1	1	45	85	13.5781
..((((((((((((((((.....))))..)))))))))))	chr16:67862284-67862572(-)$1	1	96	136	14.8852
...(((((((((((.(((......))).))))))))))).	chr11:61641159-61641418(-)$1	1	15	55	18.8672
)))((((((((((...(((......)))...)))))))))	chr19:50372358-50372622(-)$1	1	223	263	19.4348
((.((((..(((...((((...))))....)))..)))))	chr12:6857220-6857458(-)$1	1	43	83	13.0875
))).(((((((((...((......)))))))))))(((..	chr6:31526032-31526341(+)$1	1	164	204	15.5061
(((((((..(((((((((......))).)).))))....)	chr11:67378563-67378778(+)$1	1	32	72	14.0219
.((((....(.(..((((......))).)..).)..))))	chr3:48481718-48481939(+)$1	1	118	158	16.5967
(..(((((((((...(((.((...)).)))....)).)))	chr1:155112557-155112791(-)$1	1	124	164	13.6213
....((..((.(.(((.(......).))).)...))....	chr19:7684538-7684793(-)$1	1	121	161	16.5213
.((.((((...((.((((......))))...))...))))	chr11:62482314-62482638(-)$1	1	227	267	15.6558
((((((((((((...(((......))))))).))))))))	chr9:130925792-130926067(+)$1	1	25	65	18.8369
(((((.(.(((..(((.(......))))))))))))))).	chr19:12841737-12841981(-)$1	1	163	203	17.1223
..(((((((((((((.((......)).))....)))))))	chr1:2125389-2125686(-)$1	1	161	201	15.8767
.(((((((..((.(.(((......))).))))))))))..	chr3:47892154-47892410(-)$1	1	9	49	15.0035
(((.(((....(...(((.....)))..)....))).)))	chr19:3062207-3062463(-)$1	1	96	136	14.9308
.((((....(((((((((((...))))...))))))))))	chr16:67471941-67472234(-)$1	1	167	207	13.0294
(((((.(((.(((..((..(......)..))))).)))..	chr6:33171654-33171916(+)$1	1	17	57	14.0783
((..((((.((..(((.((......)).))).))...)))	chr19:8576418-8576686(-)$1	1	105	145	14.1373
((((....((((((.(((......))).))))))..))))	chr19:19388435-19388723(-)$1	1	179	219	14.5606
((.(((((((.....(((......)))..))))))).)).	chr3:50367775-50368059(-)$1	1	120	160	15.9930
((((....(((...((((......))))...)))..))))	chr5:137891107-137891349(-)$1	1	110	150	18.4321
(.((((.(((.((..(((......))).)).))).)))).	chr12:56552042-56552278(+)$1	1	123	163	16.0069
((((.(((..((...(((...)))..)).)))))))))).	chr6:33258019-33258305(+)$1	1	131	171	13.0178
((((((((((((((((.((....)).))))))))))))))	chr6:34555429-34555651(-)$1	1	58	98	15.5464
((((..((((.(...(((......)))....).))))..)	chr11:126072928-126073192(-)$1	1	21	61	16.6263
((.((((((((((....((.....))...)))))))))))	chr1:900620-900870(+)$1	1	159	199	16.3541
(((((...((.((((.((......)))))).))..)))))	chr4:1810303-1810587(+)$1	1	133	173	14.8623
....((.(((((((((.(......).))))))))).))..	chr5:139062838-139063106(+)$1	1	192	232	16.2712
((((((((.(((((((((......))))............	chr11:770796-770998(-)$1	1	9	49	13.9415
(..((((((..(...((((....))))...).))))))..	chr7:128498809-128499070(+)$1	1	38	78	13.2183

#PSSM
= : 0.11	b : 0.11	g : 0.11	d : 0.07	[ : 0.07	: : 0.07	c : 0.05	h : 0.05	f : 0.05	! : 0.03	i : 0.03	% : 0.03	# : 0.03	e : 0.03	a : 0.01	) : 0.01	" : 0.01	
g : 0.17	= : 0.11	d : 0.11	b : 0.07	[ : 0.07	! : 0.07	h : 0.05	f : 0.05	a : 0.03	i : 0.03	% : 0.03	# : 0.03	e : 0.03	c : 0.01	" : 0.01	: : 0.01	
= : 0.17	g : 0.17	! : 0.09	[ : 0.09	c : 0.07	d : 0.07	h : 0.05	b : 0.03	" : 0.03	i : 0.03	f : 0.03	# : 0.03	a : 0.01	% : 0.01	e : 0.01	
= : 0.23	g : 0.21	d : 0.09	c : 0.07	[ : 0.05	" : 0.05	h : 0.05	! : 0.03	i : 0.03	b : 0.03	# : 0.03	: : 0.01	e : 0.01	f : 0.01	
= : 0.23	g : 0.19	d : 0.13	c : 0.09	" : 0.07	b : 0.07	f : 0.03	h : 0.03	i : 0.03	# : 0.03	[ : 0.01	! : 0.01	
= : 0.23	g : 0.15	" : 0.11	d : 0.11	[ : 0.07	# : 0.07	c : 0.05	f : 0.03	h : 0.03	i : 0.03	b : 0.03	! : 0.01	
= : 0.23	g : 0.15	d : 0.11	c : 0.09	" : 0.07	# : 0.07	f : 0.03	b : 0.03	a : 0.03	h : 0.03	i : 0.03	[ : 0.03	! : 0.01	
= : 0.23	g : 0.13	# : 0.11	c : 0.09	d : 0.07	" : 0.07	! : 0.07	i : 0.05	f : 0.03	b : 0.03	[ : 0.03	h : 0.01	
= : 0.19	c : 0.11	[ : 0.09	! : 0.09	# : 0.09	g : 0.07	d : 0.07	f : 0.05	" : 0.05	i : 0.05	b : 0.03	a : 0.01	e : 0.01	
= : 0.19	c : 0.11	g : 0.09	d : 0.09	b : 0.09	! : 0.07	" : 0.07	# : 0.05	f : 0.03	a : 0.03	e : 0.03	[ : 0.03	i : 0.03	
= : 0.19	[ : 0.13	b : 0.13	c : 0.11	d : 0.09	" : 0.07	# : 0.05	! : 0.03	e : 0.03	i : 0.03	a : 0.01	g : 0.01	f : 0.01	$ : 0.01	
= : 0.17	d : 0.15	c : 0.11	a : 0.11	b : 0.11	i : 0.05	" : 0.05	# : 0.03	e : 0.03	f : 0.03	! : 0.03	[ : 0.01	g : 0.01	$ : 0.01	
" : 0.21	= : 0.17	d : 0.13	c : 0.07	[ : 0.07	i : 0.05	f : 0.05	! : 0.05	e : 0.03	b : 0.03	# : 0.01	a : 0.01	g : 0.01	$ : 0.01	
" : 0.24	d : 0.09	c : 0.09	= : 0.09	! : 0.07	# : 0.05	f : 0.05	[ : 0.05	b : 0.05	i : 0.03	a : 0.03	e : 0.03	g : 0.01	$ : 0.01	
" : 0.23	d : 0.17	[ : 0.13	c : 0.07	# : 0.05	! : 0.05	b : 0.05	i : 0.03	= : 0.03	f : 0.03	r : 0.01	e : 0.01	a : 0.01	g : 0.01	$ : 0.01	
c : 0.42	d : 0.21	[ : 0.07	" : 0.05	i : 0.03	# : 0.03	= : 0.03	f : 0.03	r : 0.01	e : 0.01	g : 0.01	b : 0.01	
c : 0.40	d : 0.21	b : 0.11	[ : 0.09	# : 0.03	f : 0.03	i : 0.01	! : 0.01	r : 0.01	= : 0.01	e : 0.01	
c : 0.38	d : 0.21	b : 0.17	a : 0.05	! : 0.03	r : 0.03	i : 0.01	= : 0.01	f : 0.01	o : 0.01	e : 0.01	
o : 0.55	d : 0.11	b : 0.07	c : 0.05	r : 0.03	n : 0.03	i : 0.01	m : 0.01	= : 0.01	[ : 0.01	! : 0.01	l : 0.01	
o : 0.59	m : 0.13	n : 0.07	r : 0.03	l : 0.03	i : 0.01	c : 0.01	= : 0.01	b : 0.01	d : 0.01	a : 0.01	
o : 0.61	m : 0.17	n : 0.07	l : 0.05	r : 0.03	c : 0.01	b : 0.01	
o : 0.61	m : 0.17	l : 0.07	n : 0.07	r : 0.03	c : 0.01	
o : 0.61	m : 0.15	n : 0.07	l : 0.05	c : 0.03	r : 0.03	d : 0.01	
o : 0.59	d : 0.13	c : 0.05	m : 0.03	l : 0.03	b : 0.03	n : 0.03	a : 0.01	f : 0.01	r : 0.01	
c : 0.34	d : 0.21	b : 0.17	o : 0.05	a : 0.05	f : 0.03	i : 0.01	] : 0.01	= : 0.01	r : 0.01	e : 0.01	2 : 0.01	
c : 0.38	d : 0.21	b : 0.15	= : 0.05	] : 0.05	f : 0.03	i : 0.01	r : 0.01	e : 0.01	o : 0.01	2 : 0.01	
c : 0.40	d : 0.21	= : 0.07	i : 0.05	] : 0.05	2 : 0.03	f : 0.03	b : 0.03	e : 0.01	4 : 0.01	a : 0.01	3 : 0.01	
] : 0.19	2 : 0.13	d : 0.13	c : 0.13	3 : 0.11	= : 0.07	i : 0.05	b : 0.05	f : 0.03	4 : 0.03	e : 0.01	
3 : 0.17	c : 0.15	2 : 0.11	d : 0.09	= : 0.09	b : 0.07	i : 0.05	f : 0.05	a : 0.05	] : 0.03	4 : 0.03	e : 0.01	> : 0.01	
= : 0.15	3 : 0.15	c : 0.13	d : 0.09	4 : 0.09	b : 0.09	i : 0.05	] : 0.05	2 : 0.03	f : 0.03	e : 0.01	a : 0.01	g : 0.01	> : 0.01	
= : 0.15	c : 0.13	d : 0.13	4 : 0.11	a : 0.07	] : 0.07	i : 0.05	g : 0.05	b : 0.05	3 : 0.05	e : 0.01	2 : 0.01	f : 0.01	> : 0.01	
= : 0.17	d : 0.13	4 : 0.11	c : 0.11	] : 0.09	g : 0.09	i : 0.07	b : 0.05	a : 0.05	e : 0.01	3 : 0.01	f : 0.01	> : 0.01	
= : 0.19	g : 0.13	c : 0.11	4 : 0.11	d : 0.09	i : 0.07	b : 0.07	3 : 0.05	] : 0.03	f : 0.03	a : 0.01	e : 0.01	> : 0.01	
= : 0.21	g : 0.15	d : 0.11	c : 0.09	3 : 0.07	2 : 0.07	4 : 0.05	i : 0.05	b : 0.03	f : 0.03	e : 0.01	] : 0.01	a : 0.01	> : 0.01	
= : 0.21	g : 0.17	2 : 0.15	3 : 0.13	b : 0.07	i : 0.05	d : 0.05	c : 0.03	] : 0.03	4 : 0.01	> : 0.01	f : 0.01	
= : 0.21	g : 0.19	3 : 0.09	2 : 0.09	c : 0.07	b : 0.07	d : 0.05	] : 0.03	f : 0.03	a : 0.03	h : 0.01	i : 0.01	4 : 0.01	> : 0.01	
= : 0.19	g : 0.17	c : 0.09	] : 0.09	d : 0.09	3 : 0.07	4 : 0.05	f : 0.03	2 : 0.03	b : 0.03	i : 0.03	h : 0.01	e : 0.01	> : 0.01	
= : 0.21	c : 0.15	g : 0.15	d : 0.15	4 : 0.05	f : 0.03	2 : 0.03	] : 0.03	i : 0.03	b : 0.03	a : 0.01	h : 0.01	e : 0.01	> : 0.01	
= : 0.21	d : 0.15	g : 0.13	c : 0.09	2 : 0.07	4 : 0.05	f : 0.03	3 : 0.03	i : 0.03	] : 0.01	h : 0.01	a : 0.01	o : 0.01	: : 0.01	e : 0.01	b : 0.01	> : 0.01	
= : 0.15	d : 0.13	] : 0.09	g : 0.09	c : 0.07	2 : 0.05	3 : 0.05	h : 0.05	f : 0.03	i : 0.03	4 : 0.03	> : 0.03	: : 0.03	e : 0.03	a : 0.01	o : 0.01	

#score	795.1582013858849
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_CDS_m2_run2.txt

#BEAR
ggg[ccc!!cccnnnnnccc22ccc]ggg	chr9:34647693-34647980(+)$1	287	68	97	15.3578
[eeeee"""cccnnnnnccc4444eeeee	chr22:50660894-50661168(-)$1	274	177	206	14.4545
===="""eeeeennnnneeeee4444===	chr12:72004729-72004985(-)$1	256	211	240	11.6392
iiiiiiiii[bboooooobb]iiiiiiii	chr4:107115776-107116045(-)$1	269	190	219	10.6155
iiiiiiiii[bbnnnnnbbiiiiiiiiic	chr10:135215564-135215810(+)$1	246	172	201	11.5771
::dddd!!cccooooooccc22ddddddd	chr7:1608841-1609101(-)$1	260	79	108	10.6177
ccc[dddd[cccmmmmccc22dddd]ccc	chr7:5262119-5262364(+)$1	245	13	42	9.4283
$$dddd"""cccmmmmccc333dddd333	chr2:160623672-160623945(+)$1	273	120	149	11.5579
ccc[bb!!cccooooooccc22bbccc]g	chr20:47626654-47626926(+)$1	272	128	157	12.5287
=======!!cccooooooccc========	chr11:70185171-70185460(+)$1	289	30	59	13.2703
gggeeeee[bbannnnna]bb]eeeee]g	chr20:62368761-62369025(+)$1	264	64	93	10.5259
[bb[gggggggannnnna]ggggggg]bb	chr17:73701581-73701843(+)$1	262	175	204	10.8534
dddddd!!cccooooooccc22dddd22d	chr16:30715276-30715528(+)$1	252	125	154	12.0977
cc[ccc[eeeeellleeeee22ccc]ccc	chr2:69583579-69583802(-)$1	223	40	69	9.9319
b[ccc"""ddddnnnnndddd333ccc]b	chr2:128084191-128084504(-)$1	313	144	173	13.2008
cc!!bb[a[bboooooobb]a]bb333cc	chr2:54886921-54887189(+)$1	268	57	86	10.1605
ccc[ggggggg[aooooooa]ggggggg]	chr2:29164222-29164469(+)$1	247	44	73	10.0485
!!eeeee!!cccmmmmccc4444eeeee]	chr17:38189567-38189828(-)$1	261	53	82	10.9301
eee[ccc!!cccoooooocccccc]eeee	chr11:3765719-3766002(-)$1	283	68	97	11.7946
c!!ccc"""cccnnnnnccc22ccc22cc	chr9:135798738-135799007(-)$1	269	20	49	15.4354
:eeeee"""ddddllldddd4444eeeee	chr14:36169392-36169642(-)$1	250	114	143	9.8303
##dddd!!ddddnnnnndddd]dddd===	chr1:153617423-153617730(+)$1	307	108	137	12.2706
iiiiii"""cccammmma]ccciiiiiii	chr6:33162684-33162948(-)$1	264	130	159	11.3533
[bb[dddd[cccaooooooa]ccc22ddd	chr6:168348409-168348716(+)$1	307	108	137	9.5535
ddd[ccc!!ddddllldddd22ccc]ddd	chr1:151196607-151196861(+)$1	254	197	226	11.1980
#dddd####cccnnnnnccc22ddddfff	chr5:32380114-32380387(-)$1	273	116	145	13.7821
d[ffffffddddnnnnndddd4444ffff	chr14:24654056-24654301(-)$1	245	138	167	10.4228
::==========nnnnn==========dd	chr2:85770672-85770919(+)$1	247	75	104	11.0456
[a!!ccceeeeennnnneeeee]ccc22a	chr17:42117495-42117737(-)$1	242	206	235	10.8471
:ccca[ccc[cccmmmmccc22ccc]a]c	chr10:121336102-121336372(-)$1	270	138	167	9.7341
ddd[ccc"""bbnnnnnbb333ccc]ddd	chr10:135214913-135215187(+)$1	274	154	183	13.4180
ggggggg!!cccnnnnnccc333gggggg	chr2:201778023-201778253(-)$1	230	9	38	15.1132
dddccc"""cccmmmmccc333ccc]ddd	chr1:97270235-97270487(+)$1	252	199	228	12.3756
!!a[ffffff[annnnna]ffffff]a22	chr13:76431935-76432197(+)$1	262	41	70	9.8822
!!dddd"""cccnnnnnccc4444dddd]	chr2:99197912-99198194(+)$1	282	157	186	14.6693
[ggggggg[cccnnnnncccggggggg]d	chr6:41566423-41566677(+)$1	254	14	43	13.0339
=eeeee"""cccnnnnnccc333eeeee>	chr11:12886220-12886517(+)$1	297	101	130	14.6032
ee!!ccceeeeeooooooeeeee333ccc	chr6:30622984-30623228(-)$1	244	146	175	9.5742
ggggggg[cccooooooccc22ggggggg	chr20:62572416-62572633(-)$1	217	15	44	12.8093
cceeeee!!cccnnnnnccc22eeeee::	chr10:121339382-121339656(-)$1	274	187	216	11.8113
iiiiii!!cccooooooccc22iiiiiii	chr4:57356641-57356942(+)$1	301	32	61	13.8188
ddddccc!!bbnnnnnbb4444ccc]ddd	chr6:145161784-145162017(+)$1	233	151	180	11.1244
cccccc"""cccmmmmccc333ccc]ccc	chr2:209108193-209108460(-)$1	267	177	206	12.8265
d[ccc!!eeeeennnnneeeee]ccc]dd	chr4:2916494-2916742(+)$1	248	202	231	11.1372
eeeee"""ddddnnnnndddd333eeeee	chr6:64289848-64290072(+)$1	224	184	213	12.6609
bb[ccc"""cccnnnnnccc333ccc]bb	chr3:8675522-8675794(-)$1	272	10	39	14.8367
"""bb!!ddddoooooodddd22bb]iii	chr11:46439456-46439728(-)$1	272	47	76	10.3970
!!ccc"""ddddmmmmdddd333ccc22a	chr1:207269756-207270005(+)$1	249	68	97	11.2784
=======[ddddnnnnndddd]=======	chr21:44513222-44513474(-)$1	252	28	57	13.1628

#otherMatches

#Seq PSSM
GUUCGGCCCUGCCCGUAGCACAGCCAAGC	chr9:34647693-34647980(+)$1	287	68	97	15.3578
CUCUGCAGAGGCAGCUCGUCGGGAGCAGA	chr22:50660894-50661168(-)$1	274	177	206	14.4545
UUCUCAAUUUAAAAGAAUUAAAGCACAGA	chr12:72004729-72004985(-)$1	256	211	240	11.6392
GUUUUUUUGAUAUUGUAUUAGCAAAAGGA	chr4:107115776-107116045(-)$1	269	190	219	10.6155
CUGGCCCUGUGUGGUGAgccggggcuggg	chr10:135215564-135215810(+)$1	246	172	201	11.5771
CCCUUUCUUUUUAACCUAAAUUAAAGCUG	chr7:1608841-1609101(-)$1	260	79	108	10.6177
CUGGAGAUAGCCGUGUGGCGCAUUUGCAG	chr7:5262119-5262364(+)$1	245	13	42	9.4283
AGCUUCAGAGGAUGAUUCCGAAGAAGACG	chr2:160623672-160623945(+)$1	273	120	149	11.5579
GGGACAUGGCGAUCCGCUGCAUUGCCCAG	chr20:47626654-47626926(+)$1	272	128	157	12.5287
AGAUUCUGCCUUAACUAAAAGAGAGUUUA	chr11:70185171-70185460(+)$1	289	30	59	13.2703
CUGCCAGGUGGCGCCAGGUCCCCUUGGCC	chr20:62368761-62369025(+)$1	264	64	93	10.5259
ACCGCCUCCUCCUGGGUGUGAGGAGGAGG	chr17:73701581-73701843(+)$1	262	175	204	10.8534
GACAGGCAGCAAUCCUGUGUCCCCUGCCU	chr16:30715276-30715528(+)$1	252	125	154	12.0977
AGCCAGUAUGUUCUAGGCAUUUCUGACUU	chr2:69583579-69583802(-)$1	223	40	69	9.9319
CAGGUUACAUUCCAGAUGAAUUACACCAG	chr2:128084191-128084504(-)$1	313	144	173	13.2008
AAAUUGAGUGAUGAUGUucucccacccuu	chr2:54886921-54887189(+)$1	268	57	86	10.1605
AUUUGCGUGUUCGUCAUCUCUAAUACGUU	chr2:29164222-29164469(+)$1	247	44	73	10.0485
UUCAGGGCCAGGUGCUCCUUCUCUCCUGU	chr17:38189567-38189828(-)$1	261	53	82	10.9301
CACAACAUUGAAAGGAUCUUCUGUGGUGC	chr11:3765719-3766002(-)$1	283	68	97	11.7946
UGUGAUUUGUGAUUCUCUCAGUGUUUAGA	chr9:135798738-135799007(-)$1	269	20	49	15.4354
UUUCUUUUCCUUUUUUAAAGCCAUGAGAA	chr14:36169392-36169642(-)$1	250	114	143	9.8303
UGGGCCAGGUCGGGGUAUGAUAGGUCGGG	chr1:153617423-153617730(+)$1	307	108	137	12.2706
GCCUCUCCAACCCUAGUGAGGUGGAGGUC	chr6:33162684-33162948(-)$1	264	130	159	11.3533
CCCUGACUUGAGCAGAUCAGCCUCCUAGU	chr6:168348409-168348716(+)$1	307	108	137	9.5535
GAAGGAACCUGUUUAUGACAUUUUUAUUU	chr1:151196607-151196861(+)$1	254	197	226	11.1980
CUCGGGUAUGGUGAAAGACCCACCGGACG	chr5:32380114-32380387(-)$1	273	116	145	13.7821
CCGGAGCUUAUGGAAUGCAUGCUGCAGCU	chr14:24654056-24654301(-)$1	245	138	167	10.4228
UUUAAUUUAAUGCUACAUAUUAAGUUACG	chr2:85770672-85770919(+)$1	247	75	104	11.0456
CAGACCAUUCACAAGACGUGAGUUGGGAU	chr17:42117495-42117737(-)$1	242	206	235	10.8471
GCCAAGUGUAUGGAAACCCACAACAGUAU	chr10:121336102-121336372(-)$1	270	138	167	9.7341
ACCAGAGCUGUGAUGUCCAAAAUUCAGGU	chr10:135214913-135215187(+)$1	274	154	183	13.4180
GGGAUAACAUGCAAAUAGCACUUUUAUUC	chr2:201778023-201778253(-)$1	230	9	38	15.1132
UAUGCCUGGAGUCUCAGCUGGUGGCAAUA	chr1:97270235-97270487(+)$1	252	199	228	12.3756
UGACUGCUAUGUAUCCCAGAUGGCAAUAU	chr13:76431935-76432197(+)$1	262	41	70	9.8822
AACUUGAGCGGCCUGGUGCCCAUCCGAGA	chr2:99197912-99198194(+)$1	282	157	186	14.6693
GCCCCAGAGUUCUGGGUGAGUUUGGGGGG	chr6:41566423-41566677(+)$1	254	14	43	13.0339
GGGCUUUUCAUCUCCAUGGUUACAGGCUU	chr11:12886220-12886517(+)$1	297	101	130	14.6032
GCUAUGAGAACUUUGUACAGUUCAGAUCG	chr6:30622984-30623228(-)$1	244	146	175	9.5742
GGGAGGGCUCUGGGAAAAGACCCCCUUCU	chr20:62572416-62572633(-)$1	217	15	44	12.8093
UUGUAUCUUUUUAUAACAAACUGGUACGU	chr10:121339382-121339656(-)$1	274	187	216	11.8113
UUUAUAUUACUUUCUCCAGUUUUAUAAAC	chr4:57356641-57356942(+)$1	301	32	61	13.8188
AGCAGAUUCACAGCACGUUUCCAUCUUGC	chr6:145161784-145162017(+)$1	233	151	180	11.1244
UUGAAGAUUUUGCACACAGUUCCUUCCAA	chr2:209108193-209108460(-)$1	267	177	206	12.8265
CACCACACUCACAGACCGUGAGCUGGAGG	chr4:2916494-2916742(+)$1	248	202	231	11.1372
GUUUCAAAGAUUCCAACGGUCAUAGAAAC	chr6:64289848-64290072(+)$1	224	184	213	12.6609
gguacaauuccucucuaagguuguGUUUC	chr3:8675522-8675794(-)$1	272	10	39	14.8367
UCUCCCUGGAUUUUGUUAUUCUUGGUAAC	chr11:46439456-46439728(-)$1	272	47	76	10.3970
CCUGGCCCUCAUAACUAUGACUUCUAUAC	chr1:207269756-207270005(+)$1	249	68	97	11.2784
GCUGCGCGUGUUGAGAGAGUGGGUGUGGU	chr21:44513222-44513474(-)$1	252	28	57	13.1628

#DB
(((.(((..(((.....)))..))).)))	chr9:34647693-34647980(+)$1	1	68	97	15.3578
.(((((...(((.....)))....)))))	chr22:50660894-50661168(-)$1	1	177	206	14.4545
((((...(((((.....)))))....)))	chr12:72004729-72004985(-)$1	1	211	240	11.6392
(((((((((.((......)).))))))))	chr4:107115776-107116045(-)$1	1	190	219	10.6155
(((((((((.((.....)))))))))))(	chr10:135215564-135215810(+)$1	1	172	201	11.5771
..((((..(((......)))..))))(((	chr7:1608841-1609101(-)$1	1	79	108	10.6177
(((.((((.(((....)))..)))).)))	chr7:5262119-5262364(+)$1	1	13	42	9.4283
..((((...(((....)))...))))...	chr2:160623672-160623945(+)$1	1	120	149	11.5579
(((.((..(((......)))..))))).)	chr20:47626654-47626926(+)$1	1	128	157	12.5287
(((((((..(((......)))))))))))	chr11:70185171-70185460(+)$1	1	30	59	13.2703
((((((((.(((.....).)).))))).)	chr20:62368761-62369025(+)$1	1	64	93	10.5259
.((.((((((((.....).))))))).))	chr17:73701581-73701843(+)$1	1	175	204	10.8534
((((((..(((......)))..))))..)	chr16:30715276-30715528(+)$1	1	125	154	12.0977
((.(((.(((((...)))))..))).)))	chr2:69583579-69583802(-)$1	1	40	69	9.9319
(.(((...((((.....))))...))).)	chr2:128084191-128084504(-)$1	1	144	173	13.2008
((..((.(.((......)).).))...))	chr2:54886921-54887189(+)$1	1	57	86	10.1605
(((.(((((((.(......).))))))).	chr2:29164222-29164469(+)$1	1	44	73	10.0485
..(((((..(((....)))....))))).	chr17:38189567-38189828(-)$1	1	53	82	10.9301
(((.(((..(((......)))))).))))	chr11:3765719-3766002(-)$1	1	68	97	11.7946
(..(((...(((.....)))..)))..))	chr9:135798738-135799007(-)$1	1	20	49	15.4354
.(((((...((((...))))....)))))	chr14:36169392-36169642(-)$1	1	114	143	9.8303
..((((..((((.....)))).)))))))	chr1:153617423-153617730(+)$1	1	108	137	12.2706
((((((...((((....).))))))))))	chr6:33162684-33162948(-)$1	1	130	159	11.3533
.((.((((.((((......).)))..)))	chr6:168348409-168348716(+)$1	1	108	137	9.5535
(((.(((..((((...))))..))).)))	chr1:151196607-151196861(+)$1	1	197	226	11.1980
.((((....(((.....)))..)))))))	chr5:32380114-32380387(-)$1	1	116	145	13.7821
(.((((((((((.....))))....))))	chr14:24654056-24654301(-)$1	1	138	167	10.4228
..((((((((((.....))))))))))((	chr2:85770672-85770919(+)$1	1	75	104	11.0456
.(..((((((((.....))))).)))..)	chr17:42117495-42117737(-)$1	1	206	235	10.8471
.((((.(((.(((....)))..))).).)	chr10:121336102-121336372(-)$1	1	138	167	9.7341
(((.(((...((.....))...))).)))	chr10:135214913-135215187(+)$1	1	154	183	13.4180
(((((((..(((.....)))...))))))	chr2:201778023-201778253(-)$1	1	9	38	15.1132
((((((...(((....)))...))).)))	chr1:97270235-97270487(+)$1	1	199	228	12.3756
..(.((((((.(.....).)))))).)..	chr13:76431935-76432197(+)$1	1	41	70	9.8822
..((((...(((.....)))....)))).	chr2:99197912-99198194(+)$1	1	157	186	14.6693
.(((((((.(((.....)))))))))).)	chr6:41566423-41566677(+)$1	1	14	43	13.0339
((((((...(((.....)))...))))).	chr11:12886220-12886517(+)$1	1	101	130	14.6032
((..((((((((......)))))...)))	chr6:30622984-30623228(-)$1	1	146	175	9.5742
(((((((.(((......)))..)))))))	chr20:62572416-62572633(-)$1	1	15	44	12.8093
))(((((..(((.....)))..)))))..	chr10:121339382-121339656(-)$1	1	187	216	11.8113
((((((..(((......)))..)))))))	chr4:57356641-57356942(+)$1	1	32	61	13.8188
(((((((..((.....))....))).)))	chr6:145161784-145162017(+)$1	1	151	180	11.1244
((((((...(((....)))...))).)))	chr2:209108193-209108460(-)$1	1	177	206	12.8265
(.(((..(((((.....))))).))).))	chr4:2916494-2916742(+)$1	1	202	231	11.1372
(((((...((((.....))))...)))))	chr6:64289848-64290072(+)$1	1	184	213	12.6609
((.(((...(((.....)))...))).))	chr3:8675522-8675794(-)$1	1	10	39	14.8367
...((..((((......))))..)).)))	chr11:46439456-46439728(-)$1	1	47	76	10.3970
..(((...((((....))))...)))..)	chr1:207269756-207270005(+)$1	1	68	97	11.2784
(((((((.((((.....)))).)))))))	chr21:44513222-44513474(-)$1	1	28	57	13.1628

#PSSM
c : 0.16	d : 0.14	[ : 0.10	g : 0.08	= : 0.08	i : 0.08	: : 0.08	! : 0.08	e : 0.06	b : 0.04	# : 0.04	$ : 0.02	" : 0.02	
c : 0.16	e : 0.12	d : 0.12	g : 0.10	! : 0.10	i : 0.08	= : 0.06	b : 0.06	[ : 0.06	: : 0.04	$ : 0.02	# : 0.02	a : 0.02	" : 0.02	
d : 0.20	c : 0.16	e : 0.14	g : 0.10	= : 0.08	i : 0.08	! : 0.08	b : 0.04	[ : 0.04	f : 0.02	a : 0.02	" : 0.02	
[ : 0.20	c : 0.18	e : 0.14	d : 0.14	= : 0.08	i : 0.08	! : 0.06	g : 0.06	f : 0.02	b : 0.02	
c : 0.30	d : 0.16	e : 0.14	g : 0.10	i : 0.08	b : 0.06	= : 0.06	f : 0.04	" : 0.02	a : 0.02	
c : 0.24	d : 0.14	e : 0.12	g : 0.10	" : 0.08	i : 0.08	= : 0.06	b : 0.04	f : 0.04	! : 0.04	# : 0.02	[ : 0.02	
" : 0.28	c : 0.16	! : 0.14	g : 0.10	= : 0.06	e : 0.06	i : 0.04	d : 0.04	[ : 0.04	f : 0.04	# : 0.02	
" : 0.28	! : 0.26	e : 0.12	d : 0.06	g : 0.06	i : 0.04	f : 0.04	[ : 0.04	a : 0.02	# : 0.02	= : 0.02	c : 0.02	
" : 0.22	! : 0.16	d : 0.14	c : 0.12	e : 0.10	[ : 0.10	i : 0.04	g : 0.04	# : 0.02	= : 0.02	f : 0.02	
c : 0.48	d : 0.18	e : 0.10	[ : 0.06	b : 0.06	g : 0.04	= : 0.02	" : 0.02	f : 0.02	
c : 0.51	d : 0.18	b : 0.12	e : 0.10	g : 0.04	= : 0.02	[ : 0.02	
c : 0.40	d : 0.16	o : 0.14	e : 0.10	b : 0.06	a : 0.06	[ : 0.02	= : 0.02	n : 0.02	
n : 0.51	o : 0.22	m : 0.12	a : 0.06	d : 0.04	l : 0.02	c : 0.02	
n : 0.51	o : 0.26	m : 0.16	l : 0.06	
n : 0.51	o : 0.26	m : 0.16	l : 0.06	
n : 0.51	o : 0.26	m : 0.16	l : 0.04	e : 0.02	
n : 0.48	o : 0.26	c : 0.10	d : 0.06	m : 0.04	e : 0.02	b : 0.02	
c : 0.42	d : 0.18	o : 0.12	e : 0.08	b : 0.08	a : 0.08	= : 0.02	
c : 0.46	d : 0.18	e : 0.10	b : 0.08	] : 0.08	o : 0.04	= : 0.02	4 : 0.02	
c : 0.38	d : 0.18	e : 0.10	3 : 0.08	b : 0.04	a : 0.04	4 : 0.04	i : 0.02	2 : 0.02	g : 0.02	] : 0.02	= : 0.02	f : 0.02	
2 : 0.26	3 : 0.16	d : 0.12	4 : 0.10	e : 0.08	] : 0.06	c : 0.06	g : 0.04	i : 0.02	b : 0.02	a : 0.02	= : 0.02	f : 0.02	
2 : 0.26	3 : 0.20	4 : 0.12	e : 0.08	] : 0.08	g : 0.06	c : 0.06	i : 0.04	= : 0.04	d : 0.02	f : 0.02	
c : 0.22	4 : 0.12	d : 0.12	3 : 0.12	i : 0.08	g : 0.08	= : 0.06	e : 0.06	b : 0.04	] : 0.04	f : 0.02	2 : 0.02	
c : 0.30	d : 0.12	4 : 0.10	g : 0.10	i : 0.08	e : 0.08	b : 0.06	= : 0.06	3 : 0.06	f : 0.02	
c : 0.30	e : 0.14	d : 0.14	g : 0.10	i : 0.08	= : 0.06	4 : 0.04	3 : 0.04	] : 0.02	2 : 0.02	f : 0.02	b : 0.02	
] : 0.22	e : 0.16	d : 0.12	c : 0.12	g : 0.10	i : 0.08	= : 0.06	3 : 0.04	2 : 0.04	4 : 0.02	f : 0.02	
e : 0.16	d : 0.14	c : 0.12	g : 0.10	= : 0.10	i : 0.10	2 : 0.08	] : 0.06	3 : 0.04	f : 0.04	a : 0.04	
d : 0.18	e : 0.12	c : 0.12	i : 0.10	] : 0.10	g : 0.08	= : 0.08	2 : 0.08	b : 0.04	f : 0.04	3 : 0.02	: : 0.02	
d : 0.20	c : 0.16	g : 0.10	e : 0.08	= : 0.08	i : 0.08	b : 0.06	] : 0.06	f : 0.04	a : 0.04	3 : 0.02	2 : 0.02	> : 0.02	: : 0.02	

#score	584.5986807011308
#seq	49
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_CDS_m2_run2.txt

#BEAR
ddddccc[dddd!!cccmmmmccc22dddd]ccc22dddd	chr17:78337392-78337653(+)$1	261	66	106	14.4664
eeee"""ccc####cccmmmmccc4444ccc]eeeeeddd	chr21:34922084-34922343(+)$1	259	92	132	16.1285
iicccbbaddddeeeeemmmmeeeee4444dddd]a333b	chr10:120832408-120832633(-)$1	225	170	210	12.9772
bb[ccc####dddd[bbmmmmbb]dddd4444ccc]bb]b	chrX:53592029-53592249(-)$1	220	172	212	12.8404
eeeee####ccc!!cccmmmmccc]ccc333eeeeeffff	chr17:38560943-38561167(-)$1	224	85	125	15.9185
==========!!eeeeemmmmeeeee22==========ff	chr1:52293367-52293604(-)$1	237	24	64	15.1778
!!ccc!!ccc!!eeeeemmmmeeeee4444ccc]ccc333	chr13:98649690-98649974(+)$1	284	151	191	15.6828
!!ccc[a!!ddddcccnnnnnccc]dddd22a]ccc333f	chr1:115276530-115276776(-)$1	246	127	167	13.9573
=========[bb[a[bbmmmmbb]a]bb]==========:	chr9:95047914-95048178(-)$1	264	195	235	14.0591
"ggggggg####cccccclllccc7777777ccc4444gg	chr11:62291443-62291730(-)$1	287	166	206	13.4870
[eeeeeccc"""bbcccmmmmccc]bb333ccc4444eee	chr12:120591466-120591735(-)$1	269	63	103	16.2422
hhhhhhhhdddd!!cccmmmmccc]dddd>>>>>>>>>>>	chr17:27010580-27010909(+)$1	329	156	196	12.4628
[ggggggg[a[eeeeeooooooeeeee333a]ggggggg]	chr1:52260081-52260381(-)$1	300	27	67	13.6279
!dddd[dddd[acccooooooccc22a]dddd]dddd333	chrX:153587374-153587592(-)$1	218	89	129	13.1340
iiiiiiiffffff[cccmmmmccc]ffffff4444iiiii	chr10:120832311-120832535(-)$1	224	163	203	15.3097
bb[dddd"""ccc[ccclllcccccc]dddd]bb333eee	chr3:193333361-193333636(+)$1	275	148	188	12.6508
gggggggffffffacccmmmmccc22a]ffffff22gggg	chr11:14507847-14508116(-)$1	269	15	55	14.3148
dd!!eeeee####ddddmmmmddddeeeee22dddd333d	chrX:153579958-153580163(-)$1	205	49	89	13.1924
==========[a!!cccmmmmccc22a4444=========	chr16:58583693-58583902(-)$1	209	159	199	20.3693
ii"""iiiiiiiiicccmmmmccc4444iiiiiiiii22i	chr17:26942654-26942910(-)$1	256	208	248	17.5090
ffff!!ccc!!ffffffmmmmffffff4444ccc22ffff	chr16:2814624-2814881(+)$1	257	70	110	13.0391
====[dddd$$$$$cccmmmmccc22dddd]=========	chr19:59060870-59061117(+)$1	247	126	166	16.9915
c[ccc!!a"""ddddnnnnndddd22a22ccc]ccc333b	chr16:2813803-2814049(+)$1	246	67	107	12.5232
cc####ccc"""ddddnnnnnddddccc4444cccdddd]	chr1:19487423-19487670(-)$1	247	150	190	12.8462
iiiiiiii"""a"""bboooooobb]a333iiiiiiiii]	chr18:19383766-19384021(+)$1	255	174	214	15.5197
##bb!!eeeee"""ccclllccceeeee22bb4444ccc3	chr1:19450934-19451203(-)$1	269	62	102	13.4869
hhhhhhhh!!bb!!cccmmmmccc]bb4444hhhhhhhhe	chr10:71151871-71152162(+)$1	291	197	237	13.8062
###eeeee!!bb!!cccmmmmccc22bbeeeee333ffff	chr1:19419233-19419467(-)$1	234	177	217	14.9445
###ccc[ccc!!a[ddddllldddd]accc]cccffffff	chr21:34925543-34925773(+)$1	230	85	125	12.9419
ddddbb!!ccc"""cccmmmmccc]ccc]bb]dddd333d	chr1:19510204-19510441(-)$1	237	147	187	15.3963
dd[a####ddddbbcccmmmmccc]bb22dddd333addd	chr2:96953519-96953749(-)$1	230	184	224	13.7941
ddd[bb[ccc[a!!cccmmmmccc22a22cccbb]dddd3	chr17:45751903-45752142(+)$1	239	148	188	15.2287
"=========="""cccmmmmccc4444==========44	chr1:19433089-19433314(-)$1	225	136	176	19.6023
[eeeeedddd"""ddddllldddd]dddd333eeeeeccc	chr17:78321477-78321742(+)$1	265	54	94	12.6559
====[ggggggg!!ccclllccc333ggggggg]======	chr8:48842312-48842514(-)$1	202	147	187	16.2477
c[eeeee!!dddd!!bbmmmmbb333dddd333eeeee22	chr18:2775708-2775984(+)$1	276	44	84	13.2939
cc[eeeee####ccc[aooooooa]ccc333eeeee]ccc	chr1:19504007-19504230(-)$1	223	127	167	13.6916
==!!a[cccvvvvvvvvvvvvvccc]a333==========	chr12:1006612-1006885(+)$1	273	49	89	12.6930
ggggg[ccc[ccc[cccoooooocccccc]cccggggggg	chrX:153589597-153589837(-)$1	240	50	90	14.0228
iiccc"""bb[ddddbbmmmmbb]dddd]bb333ccc22i	chr11:9463533-9463784(+)$1	251	25	65	12.8838
c!!ccc[ccc[bboooooobbccc]ccc333cccgggggg	chr2:96955963-96956200(-)$1	237	182	222	12.5218
iiiiiiiibbeeeeeooooooeeeee]bb22iiiiiiiii	chrX:153581824-153582040(-)$1	216	102	142	11.8835
ff[==========cccnnnnnccc]==========333ff	chr17:1581737-1581974(-)$1	237	15	55	15.1379
==="""eeeee"""cccmmmmccceeeee55555======	chr19:59060406-59060651(+)$1	245	141	181	13.8124
%cccbb[cccaddddccclllccc]dddd]a]ccc]bb]c	chrX:153579194-153579445(-)$1	251	113	153	12.4901
=====ccc[eeeeecccmmmmccc4444eeeeeccc]===	chr8:48805744-48805988(-)$1	244	121	161	16.2261
===[a[dddd!!bbcccmmmmccc]bbdddda]=======	chrX:153219913-153220261(-)$1	348	198	238	15.9836
=="""ffffff"""ccclllccc333ffffff333=====	chrX:41076373-41076603(+)$1	230	34	74	15.4451
f"""ccc!!ccc!!cccmmmmccc22ccc333ccc4444f	chr20:57480337-57480617(+)$1	280	156	196	18.1760
ggg####eeeee!!cccmmmmccc22eeeeeggggggg]d	chr3:184023462-184023753(+)$1	291	190	230	15.6009
iii[ccc[ccc!!ddddmmmmdddd333ccc]ccc333ii	chr11:34107520-34107819(+)$1	299	226	266	16.5061
ggggggg[bb"""ddddmmmmdddd4444bbggggggg33	chrX:153580650-153580909(-)$1	259	46	86	15.3011

#otherMatches

#Seq PSSM
CACCCUGAAGCCCAGUCCCCAGGCGUGGCUACAGUUGGUG	chr17:78337392-78337653(+)$1	261	66	106	14.4664
CUGUCAGUUGUAUCUACAUCAGUAAUCUCAGAGCAGUCAG	chr21:34922084-34922343(+)$1	259	92	132	16.1285
UUUGGACCUUCUUAGAAACAAUUCUAGAGUAGAGCGCCUG	chr10:120832408-120832633(-)$1	225	170	210	12.9772
GGAUGCCCAAGGAGCCUCUCAAGAUUCCAGUAGCAACCAG	chrX:53592029-53592249(-)$1	220	172	212	12.8404
GGAGGAUAGAAGACAACGAAAGUUACUUGGGCUUCCUGAG	chr17:38560943-38561167(-)$1	224	85	125	15.9185
UGAACAAAAACGGAAAUGCCAGUUUUGUUUUUUGUUCAGA	chr1:52293367-52293604(-)$1	237	24	64	15.1778
CAGAUGAACUAGAAGAUGAUGAUUUUGACAGGUAAUCAAA	chr13:98649690-98649974(+)$1	284	151	191	15.6828
GCCUGGCGAUGAUGUGGAAUUCACAAUCAAGGACAGAAAU	chr1:115276530-115276776(-)$1	246	127	167	13.9573
UUAUUCAGCAUUGAGUUUUGUAGGUGGAAGCUGAGUAGUU	chr9:95047914-95048178(-)$1	264	195	235	14.0591
GUGACUUUAAAGGCCCCAAAGUGGAUAUUAAGGCACCAGA	chr11:62291443-62291730(-)$1	287	166	206	13.4870
UGGACAGCUCUCAGGUGAAGCCACUCUUUCAGUUUUUUGU	chr12:120591466-120591735(-)$1	269	63	103	16.2422
UGGCCAUCGAACGGGCUUUACAGCAGUUCCUCUAUGUGCA	chr17:27010580-27010909(+)$1	329	156	196	12.4628
AUUGAAAAGUUAGAAGGCCUAGCUUCUUAUAGUUUUUGGG	chr1:52260081-52260381(-)$1	300	27	67	13.6279
UGUGCAUGAUGUGACAGAUGCGUCCAAGGUCAAGUGCUCU	chrX:153587374-153587592(-)$1	218	89	129	13.1340
GUGCUUUGAAAUUGACUGAGGAGUAAAUUUUCUGAAAAGU	chr10:120832311-120832535(-)$1	224	163	203	15.3097
AUGGAUUGUGCCUGACAUUGUGUGGGAAAUUGAUGAGUAU	chr3:193333361-193333636(+)$1	275	148	188	12.6508
GAAAACAAGCGUUCCUGAAAUCGGUUGAAAUGUUAAUGUU	chr11:14507847-14508116(-)$1	269	15	55	14.3148
UGGGAGGCCCAAAGGCUGAUGAGCCGGUCUUACACUCUUU	chrX:153579958-153580163(-)$1	205	49	89	13.1924
GGUUAUGAAGAGAGUCAGUAUUGAGCCAAACUUUCAUAGC	chr16:58583693-58583902(-)$1	209	159	199	20.3693
CGCAAAGCCCUGGUUGCCCAGGUAUCCCGCCAGGGCUCAU	chr17:26942654-26942910(-)$1	256	208	248	17.5090
AUGCAGUGGAAAAGGCAGGGAUGUCUUCAAAUCAGAGCAU	chr16:2814624-2814881(+)$1	257	70	110	13.0391
GGCCCUGCAGGAUGUACCAGGGUGAGUGUGAGGCUGGUGG	chr19:59060870-59061117(+)$1	247	126	166	16.9915
AAGACAAGAUAGAGGUGAGUUCUCAGCGAGUCCUAUGUUG	chr16:2813803-2814049(+)$1	246	67	107	12.5232
ACAAAGCCAAGGUUACCAUCAGUGAUGGAAAGGUUGCUGA	chr1:19487423-19487670(-)$1	247	150	190	12.8462
UACUUUUGAAGCAAAACGUGGAUGUCGAAGCAGAGGUAAG	chr18:19383766-19384021(+)$1	255	174	214	15.5197
CAGAAAUGGUACUGAGGCUUCCUUACCAAAUCAAAAAGAU	chr1:19450934-19451203(-)$1	269	62	102	13.4869
CCCCGCCUGGUGGAGAGGACACUCACAGUCAGGGUGGGGG	chr10:71151871-71152162(+)$1	291	197	237	13.8062
GUGAGGGUACAGGGGUACAAGUAUAACUACCCUAGUUUAC	chr1:19419233-19419467(-)$1	234	177	217	14.9445
UGUGACCGUCCUGGAGUCUUCGACUGUGACUGUCCUGGAG	chr21:34925543-34925773(+)$1	230	85	125	12.9419
GCUGUGACCAUCUAGGCAAGAGCUCAUGACACCAGCUUCC	chr1:19510204-19510441(-)$1	237	147	187	15.3963
AGUGGGGGUCCCCAACCCAAGGGUCUGAUGGGAAAGCCUC	chr2:96953519-96953749(-)$1	230	184	224	13.7941
GUGGUUAUGGCCUCCCUGUUAAGGAUGUUCCAAAGCACAG	chr17:45751903-45752142(+)$1	239	148	188	15.2287
GCCAUCUCUAUUUGACUGAGAAGUAUGUGUGGAGGUGGAA	chr1:19433089-19433314(-)$1	225	136	176	19.6023
CUGGGGACCCACCGCGUCAAAUGUCGGGUUCACCCCAACU	chr17:78321477-78321742(+)$1	265	54	94	12.6559
AUGAGUAUAUAUAAAUGUAUCAUAAAAUAUGUGAUUGUGG	chr8:48842312-48842514(-)$1	202	147	187	16.2477
GAAGAUGAUAGAGCUGCGAUGGUUAUUUCUUGGCAUCUGG	chr18:2775708-2775984(+)$1	276	44	84	13.2939
UGUCGCUUUUUGUCCAGAUCAUCCAGGAGUUGAGCGUCAA	chr1:19504007-19504230(-)$1	223	127	167	13.6916
AGGACCUGCAGAGUCGCCAGAAGCAUGAAAUUGAAUCUUU	chr12:1006612-1006885(+)$1	273	49	89	12.6930
CUUCCUGCCCCGUGAGGAAGGGCCCUAUGAGGUGGAGGUG	chrX:153589597-153589837(-)$1	240	50	90	14.0228
UAGUGUAGAACGGAGCUACCAAGCCUCUCUUAUUCAUGUU	chr11:9463533-9463784(+)$1	251	25	65	12.8838
CCAAGGCACCAGGAGUGGGUCGGUCCCUAUUGUGCUGCGG	chr2:96955963-96956200(-)$1	237	182	222	12.5218
CACUGCUCGGGUCACAGGUGGGUGGCACUGGGAGCAGUGA	chrX:153581824-153582040(-)$1	216	102	142	11.8835
AAUUGUAUUGCAGCUGGCAGAUGGAUUGCAGUAUAUAUUU	chr17:1581737-1581974(-)$1	237	15	55	15.1379
GGGACUGCGCCUGCAGGAACCCCUGGUGCCCCACCCCUGG	chr19:59060406-59060651(+)$1	245	141	181	13.8124
GGUGCACAGCCCCUCAGGAGCCCUGGAGGAGUGCUAUGUC	chrX:153579194-153579445(-)$1	251	113	153	12.4901
GGUGGCUGUGGCCAGCCCUCGGGCAUCCUGGCCCAGCCCA	chr8:48805744-48805988(-)$1	244	121	161	16.2261
GGUGGCUCGCCCAGCACCACAGUGACUGUGACAGCCCUGG	chrX:153219913-153220261(-)$1	348	198	238	15.9836
CAGACUUGUUUGAAAAUGGGGUUGGAAAAUAAAAAUGUGU	chrX:41076373-41076603(+)$1	230	34	74	15.4451
CGAACGCUCCAACGAGUACCAGCUGAUUGACUGUGCCCAG	chr20:57480337-57480617(+)$1	280	156	196	18.1760
CAGAGACUGAGCUCAAGGAUACUUAUGCUCGUUGGCUUCC	chr3:184023462-184023753(+)$1	291	190	230	15.6009
GUCCCUAUAAUUUCAUACAGGUAUGUUCAUUUUAGUCAGA	chr11:34107520-34107819(+)$1	299	226	266	16.5061
GGGGUGGAGCCCAGGGCUGCUGCUCACUAGCCCAUCCCCA	chrX:153580650-153580909(-)$1	259	46	86	15.3011

#DB
(((((((.((((..(((....)))..)))).)))..))))	chr17:78337392-78337653(+)$1	1	66	106	14.4664
((((...(((....(((....)))....))).)))))(((	chr21:34922084-34922343(+)$1	1	92	132	16.1285
(((((((((((((((((....)))))....)))).)...)	chr10:120832408-120832633(-)$1	1	170	210	12.9772
((.(((....((((.((....)).))))....))).)).)	chrX:53592029-53592249(-)$1	1	172	212	12.8404
(((((....(((..(((....))).)))...)))))))))	chr17:38560943-38561167(-)$1	1	85	125	15.9185
((((((((((..(((((....)))))..))))))))))((	chr1:52293367-52293604(-)$1	1	24	64	15.1778
..(((..(((..(((((....)))))....))).)))...	chr13:98649690-98649974(+)$1	1	151	191	15.6828
..(((.(..(((((((.....))).))))..).)))...)	chr1:115276530-115276776(-)$1	1	127	167	13.9573
(((((((((.((.(.((....)).).)).)))))))))).	chr9:95047914-95048178(-)$1	1	195	235	14.0591
.(((((((....((((((...))).......)))....))	chr11:62291443-62291730(-)$1	1	166	206	13.4870
.((((((((...(((((....))).))...)))....)))	chr12:120591466-120591735(-)$1	1	63	103	16.2422
((((((((((((..(((....))).))))...........	chr17:27010580-27010909(+)$1	1	156	196	12.4628
.(((((((.(.(((((......)))))...).))))))).	chr1:52260081-52260381(-)$1	1	27	67	13.6279
.((((.((((.((((......)))..).)))).))))...	chrX:153587374-153587592(-)$1	1	89	129	13.1340
(((((((((((((.(((....))).))))))....)))))	chr10:120832311-120832535(-)$1	1	163	203	15.3097
((.((((...(((.(((...)))))).)))).))...)))	chr3:193333361-193333636(+)$1	1	148	188	12.6508
(((((((((((((((((....)))..).))))))..))))	chr11:14507847-14508116(-)$1	1	15	55	14.3148
((..(((((....((((....)))))))))..))))...)	chrX:153579958-153580163(-)$1	1	49	89	13.1924
((((((((((.(..(((....)))..)....)))))))))	chr16:58583693-58583902(-)$1	1	159	199	20.3693
((...((((((((((((....)))....)))))))))..)	chr17:26942654-26942910(-)$1	1	208	248	17.5090
((((..(((..((((((....))))))....)))..))))	chr16:2814624-2814881(+)$1	1	70	110	13.0391
((((.((((.....(((....)))..)))).)))))))))	chr19:59060870-59061117(+)$1	1	126	166	16.9915
(.(((..(...((((.....))))..)..))).)))...)	chr16:2813803-2814049(+)$1	1	67	107	12.5232
((....(((...((((.....)))))))....))))))).	chr1:19487423-19487670(-)$1	1	150	190	12.8462
((((((((...(...((......)).)...))))))))).	chr18:19383766-19384021(+)$1	1	174	214	15.5197
..((..(((((...(((...))))))))..))....))).	chr1:19450934-19451203(-)$1	1	62	102	13.4869
((((((((..((..(((....))).))....))))))))(	chr10:71151871-71152162(+)$1	1	197	237	13.8062
...(((((..((..(((....)))..)))))))...))))	chr1:19419233-19419467(-)$1	1	177	217	14.9445
...(((.(((..(.((((...)))).)))).)))))))))	chr21:34925543-34925773(+)$1	1	85	125	12.9419
((((((..(((...(((....))).))).)).))))...)	chr1:19510204-19510441(-)$1	1	147	187	15.3963
((.(....(((((((((....))).))..))))...))))	chr2:96953519-96953749(-)$1	1	184	224	13.7941
(((.((.(((.(..(((....)))..)..))))).)))).	chr17:45751903-45752142(+)$1	1	148	188	15.2287
.((((((((((...(((....)))....))))))))))..	chr1:19433089-19433314(-)$1	1	136	176	19.6023
.(((((((((...((((...)))).))))...))))))))	chr17:78321477-78321742(+)$1	1	54	94	12.6559
((((.(((((((..(((...)))...))))))).))))))	chr8:48842312-48842514(-)$1	1	147	187	16.2477
(.(((((..((((..((....))...))))...)))))..	chr18:2775708-2775984(+)$1	1	44	84	13.2939
((.(((((....(((.(......).)))...))))).)))	chr1:19504007-19504230(-)$1	1	127	167	13.6916
((..(.(((.............))).)...))))))))))	chr12:1006612-1006885(+)$1	1	49	89	12.6930
(((((.(((.(((.(((......)))))).))))))))))	chrX:153589597-153589837(-)$1	1	50	90	14.0228
(((((...((.((((((....)).)))).))...)))..)	chr11:9463533-9463784(+)$1	1	25	65	12.8838
(..(((.(((.((......))))).)))...)))))))))	chr2:96955963-96956200(-)$1	1	182	222	12.5218
(((((((((((((((......))))).))..)))))))))	chrX:153581824-153582040(-)$1	1	102	142	11.8835
((.(((((((((((((.....))).))))))))))...))	chr17:1581737-1581974(-)$1	1	15	55	15.1379
(((...(((((...(((....)))))))).....))))))	chr19:59060406-59060651(+)$1	1	141	181	13.8124
.(((((.(((((((((((...))).)))).).))).)).)	chrX:153579194-153579445(-)$1	1	113	153	12.4901
((((((((.((((((((....)))....)))))))).)))	chr8:48805744-48805988(-)$1	1	121	161	16.2261
(((.(.((((..(((((....))).))))))).)))))))	chrX:153219913-153220261(-)$1	1	198	238	15.9836
((...((((((...(((...)))...))))))...)))))	chrX:41076373-41076603(+)$1	1	34	74	15.4451
(...(((..(((..(((....)))..)))...)))....)	chr20:57480337-57480617(+)$1	1	156	196	18.1760
(((....(((((..(((....)))..)))))))))))).)	chr3:184023462-184023753(+)$1	1	190	230	15.6009
(((.(((.(((..((((....))))...))).)))...))	chr11:34107520-34107819(+)$1	1	226	266	16.5061
(((((((.((...((((....))))....)))))))))..	chrX:153580650-153580909(-)$1	1	46	86	15.3011

#PSSM
= : 0.19	i : 0.13	d : 0.09	c : 0.09	g : 0.07	! : 0.05	[ : 0.05	f : 0.05	# : 0.05	e : 0.03	b : 0.03	" : 0.03	h : 0.03	% : 0.01	
= : 0.21	i : 0.13	d : 0.11	g : 0.11	e : 0.07	! : 0.05	c : 0.05	# : 0.05	b : 0.03	h : 0.03	f : 0.03	[ : 0.03	" : 0.01	
= : 0.17	c : 0.11	g : 0.11	e : 0.09	[ : 0.09	d : 0.07	i : 0.07	! : 0.05	" : 0.05	# : 0.05	h : 0.03	f : 0.01	b : 0.01	
c : 0.17	= : 0.15	e : 0.13	g : 0.09	d : 0.07	" : 0.07	i : 0.05	[ : 0.05	h : 0.03	! : 0.03	# : 0.03	f : 0.01	b : 0.01	a : 0.01	
c : 0.21	e : 0.13	= : 0.11	g : 0.09	" : 0.07	i : 0.05	# : 0.05	b : 0.05	h : 0.03	d : 0.03	! : 0.03	[ : 0.03	a : 0.03	
c : 0.13	e : 0.11	= : 0.09	[ : 0.09	g : 0.09	b : 0.07	# : 0.07	! : 0.07	i : 0.07	" : 0.05	h : 0.03	d : 0.03	f : 0.01	
c : 0.17	e : 0.11	= : 0.09	g : 0.09	d : 0.09	# : 0.07	i : 0.07	[ : 0.07	! : 0.05	" : 0.03	h : 0.03	b : 0.01	a : 0.01	f : 0.01	
c : 0.23	e : 0.11	= : 0.09	! : 0.07	d : 0.07	[ : 0.05	# : 0.05	g : 0.05	f : 0.05	i : 0.05	a : 0.03	h : 0.03	" : 0.03	
c : 0.24	d : 0.15	= : 0.09	! : 0.09	# : 0.07	e : 0.07	f : 0.05	" : 0.05	b : 0.05	[ : 0.03	i : 0.01	g : 0.01	
c : 0.19	d : 0.17	" : 0.09	# : 0.07	= : 0.07	e : 0.07	f : 0.05	! : 0.05	b : 0.05	[ : 0.03	a : 0.01	i : 0.01	$ : 0.01	g : 0.01	v : 0.01	
d : 0.13	c : 0.11	" : 0.11	[ : 0.11	! : 0.09	e : 0.09	# : 0.07	b : 0.05	f : 0.05	= : 0.03	i : 0.01	$ : 0.01	g : 0.01	v : 0.01	a : 0.01	
d : 0.19	" : 0.17	! : 0.09	# : 0.07	c : 0.07	b : 0.07	e : 0.07	a : 0.07	f : 0.05	i : 0.01	$ : 0.01	g : 0.01	v : 0.01	= : 0.01	
! : 0.21	" : 0.15	d : 0.13	e : 0.11	c : 0.09	b : 0.07	f : 0.05	# : 0.03	[ : 0.01	i : 0.01	$ : 0.01	a : 0.01	v : 0.01	= : 0.01	
! : 0.21	d : 0.17	e : 0.11	" : 0.11	c : 0.09	[ : 0.07	b : 0.05	a : 0.03	# : 0.01	i : 0.01	f : 0.01	$ : 0.01	v : 0.01	o : 0.01	
c : 0.59	d : 0.17	e : 0.09	[ : 0.03	f : 0.01	" : 0.01	! : 0.01	v : 0.01	o : 0.01	
c : 0.57	d : 0.11	b : 0.09	e : 0.07	o : 0.05	f : 0.01	n : 0.01	[ : 0.01	v : 0.01	
c : 0.53	b : 0.09	d : 0.09	n : 0.07	o : 0.07	e : 0.05	f : 0.01	a : 0.01	v : 0.01	
m : 0.61	o : 0.13	l : 0.09	n : 0.07	c : 0.03	d : 0.01	v : 0.01	
m : 0.61	l : 0.15	o : 0.13	n : 0.07	v : 0.01	
m : 0.61	l : 0.15	o : 0.11	n : 0.07	v : 0.01	b : 0.01	
m : 0.61	o : 0.11	c : 0.07	n : 0.05	l : 0.05	d : 0.03	v : 0.01	b : 0.01	
c : 0.59	d : 0.13	e : 0.07	b : 0.07	o : 0.07	f : 0.01	v : 0.01	
c : 0.61	d : 0.13	e : 0.09	b : 0.07	o : 0.05	f : 0.01	
c : 0.57	d : 0.13	e : 0.11	] : 0.05	3 : 0.05	f : 0.01	b : 0.01	a : 0.01	
] : 0.26	2 : 0.19	e : 0.13	d : 0.13	4 : 0.07	c : 0.05	3 : 0.05	a : 0.01	7 : 0.01	f : 0.01	b : 0.01	
2 : 0.19	e : 0.15	c : 0.13	d : 0.11	4 : 0.09	] : 0.07	b : 0.07	3 : 0.07	f : 0.03	7 : 0.01	= : 0.01	
d : 0.17	a : 0.15	4 : 0.13	c : 0.13	b : 0.11	e : 0.09	f : 0.05	] : 0.03	2 : 0.01	7 : 0.01	g : 0.01	= : 0.01	3 : 0.01	
d : 0.21	4 : 0.19	c : 0.15	3 : 0.09	2 : 0.07	e : 0.07	b : 0.05	] : 0.03	f : 0.03	7 : 0.01	g : 0.01	= : 0.01	
d : 0.19	4 : 0.15	3 : 0.13	c : 0.09	e : 0.09	2 : 0.07	= : 0.05	] : 0.05	f : 0.05	7 : 0.01	i : 0.01	g : 0.01	b : 0.01	
3 : 0.17	d : 0.13	4 : 0.13	c : 0.09	= : 0.07	e : 0.07	2 : 0.05	f : 0.05	b : 0.05	] : 0.03	7 : 0.01	> : 0.01	i : 0.01	g : 0.01	5 : 0.01	
c : 0.13	3 : 0.11	d : 0.09	4 : 0.09	= : 0.09	b : 0.07	] : 0.05	2 : 0.05	f : 0.05	e : 0.05	a : 0.03	i : 0.03	7 : 0.01	> : 0.01	g : 0.01	5 : 0.01	
c : 0.19	= : 0.13	] : 0.11	e : 0.07	3 : 0.07	d : 0.05	4 : 0.05	i : 0.05	g : 0.05	a : 0.03	f : 0.03	> : 0.01	2 : 0.01	b : 0.01	h : 0.01	5 : 0.01	
c : 0.24	= : 0.13	e : 0.11	d : 0.07	] : 0.07	g : 0.07	i : 0.05	3 : 0.05	4 : 0.03	b : 0.03	> : 0.01	f : 0.01	h : 0.01	5 : 0.01	
c : 0.24	= : 0.15	e : 0.09	d : 0.07	g : 0.07	3 : 0.07	4 : 0.05	i : 0.05	] : 0.03	b : 0.03	> : 0.01	f : 0.01	h : 0.01	5 : 0.01	
c : 0.19	= : 0.19	e : 0.09	g : 0.09	4 : 0.07	3 : 0.07	2 : 0.05	d : 0.05	i : 0.05	] : 0.03	> : 0.01	h : 0.01	f : 0.01	
= : 0.19	e : 0.09	c : 0.09	g : 0.09	d : 0.09	3 : 0.09	4 : 0.07	i : 0.07	2 : 0.05	] : 0.03	a : 0.01	> : 0.01	h : 0.01	f : 0.01	
= : 0.19	3 : 0.15	g : 0.11	d : 0.07	f : 0.07	i : 0.07	e : 0.05	c : 0.05	4 : 0.05	b : 0.03	] : 0.03	> : 0.01	h : 0.01	a : 0.01	
= : 0.21	3 : 0.17	g : 0.11	d : 0.09	f : 0.07	e : 0.05	i : 0.05	c : 0.05	b : 0.03	4 : 0.03	2 : 0.03	> : 0.01	h : 0.01	
= : 0.17	3 : 0.15	f : 0.11	d : 0.09	g : 0.09	i : 0.07	] : 0.05	2 : 0.05	c : 0.05	e : 0.03	4 : 0.03	> : 0.01	h : 0.01	
f : 0.15	= : 0.15	d : 0.11	3 : 0.09	i : 0.09	g : 0.07	b : 0.05	e : 0.05	] : 0.05	c : 0.05	: : 0.01	> : 0.01	4 : 0.01	2 : 0.01	

#score	758.2044746145716
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_transcript_m2_run1.txt

#BEAR
fff[==========mmmm==========22f	chr22:49960016-49960279(-)$1	263	124	155	13.2573
dddd"""ccc!!bbmmmmbb22ccc4444dd	chr19:3457058-3457325(+)$1	267	85	116	12.0239
hhhhh[ccc!!cccmmmmccc22ccc]hhhh	chr17:76115663-76115925(-)$1	262	47	78	11.7013
ggggggg[ggggggglllggggggg333ggg	chr16:88838729-88838991(-)$1	262	86	117	11.7318
ff!!bb"""ccc[ammmmaccc]bb22ffff	chr22:50627028-50627296(+)$1	268	184	215	11.5557
========="""bbmmmmbb333========	chr8:142426083-142426345(+)$1	262	154	185	13.8796
bffffffccc[cccmmmmcccccc22fffff	chr11:63913806-63914065(-)$1	259	66	97	12.1207
eeee[iiiiiiiiimmmmiiiiiiiiieeee	chr17:79877678-79877934(-)$1	256	201	232	12.4760
ee$$$$$gggggggmmmmggggggg22eeee	chr9:130330388-130330660(-)$1	272	58	89	11.4766
eeeea[dddd[cccmmmmccc]dddd]a]ee	chr8:140817296-140817551(-)$1	255	189	220	11.8233
ccc"""eeeeebbammmma]bb]eeeeeccc	chr2:97549929-97550180(-)$1	251	160	191	10.1631
ggggggg[ccccccmmmmccc]ccc]ggggg	chr9:138974343-138974593(-)$1	250	215	246	14.2411
::ccc!!ccc!!bbmmmmbb22ccc22ccci	chr17:80054961-80055237(-)$1	276	110	141	10.9997
Fa!!ggggggg[bblllbb]ggggggg22ae	chr19:56150464-56150736(+)$1	272	24	55	10.2356
[ffffff[ggggggglllggggggg]fffff	chr16:89361196-89361415(-)$1	219	111	142	10.4052
eeee"""gggggggmmmmggggggg22eeee	chr21:46840475-46840710(+)$1	235	133	164	12.2676
!ccc"""dddd!!ammmma22dddd333ccc	chr22:19785488-19785744(-)$1	256	83	114	11.8856
d!!gggggggddddmmmmdddd]ggggggg4	chr17:79971517-79971778(+)$1	261	33	64	12.2065
cc[===========nnnnn===========]	chr11:1999396-1999682(+)$1	286	178	209	11.0055
dddd[ffffff[bbmmmmbb]ffffff]ddd	chr19:5061157-5061409(+)$1	252	173	204	10.3502
cc[ccc[bb!!cccmmmmcccbb]ccc]ccc	chr22:23540477-23540781(+)$1	304	2	33	11.8914
hhh"""dddd[cccmmmmccc]dddd333hh	chr14:105254182-105254493(-)$1	311	170	201	11.9788
gg"""dddd!!cccmmmmccc]dddd]gggg	chr19:54642131-54642424(+)$1	293	20	51	12.7903
d[ccc[eeeeecccmmmmccc]eeeee]ccc	chr5:1335213-1335508(-)$1	295	88	119	11.8707
ggggggg[a!!ccclllccc22a]ggggggg	chr7:2041687-2041925(-)$1	238	170	201	11.7715
cc[cccdddd[cccmmmmccc]dddd]ccc]	chr16:81553590-81553924(+)$1	334	19	50	12.2362
cc!!ggggggg[ccclllccc]gggggggcc	chr19:4984389-4984633(+)$1	244	206	237	12.5705
a[a[==========mmmm==========]a]	chr14:103570040-103570302(+)$1	262	80	111	13.9259
gg####eeeee[bbmmmmbbeeeee]ggggg	chr15:29403545-29403800(+)$1	255	179	210	11.9185
ddddccc[a[a[ammmma]aa]ccc]dddd2	chr9:139565761-139565998(+)$1	237	11	42	9.8730
dddd[iiiiiiiiimmmmiiiiiiiii]ddd	chr1:975599-975854(+)$1	255	176	207	12.2234
dd!!bb[gggggggmmmmggggggg]bb]dd	chr9:139614897-139615132(+)$1	235	81	112	11.4697
!!ggggggg[cccnnnnnccc]gggggggcc	chr1:54737140-54737431(-)$1	291	171	202	11.0569
ccc[ccc[a[ddddmmmmdddda]cccccc]	chr9:140073899-140074189(-)$1	290	185	216	11.4772
a!!iiiiiiiiibbmmmmbb]iiiiiiiii2	chr22:46973785-46974060(+)$1	275	48	79	13.2213
#ccc[a[gggggggmmmmggggggg]a]ccc	chr3:126716798-126717091(+)$1	293	253	284	12.8483
fffff[ccc[a[ccclllccc]acccfffff	chr1:1556253-1556520(+)$1	267	115	146	11.1269
ff!!ffffff!!bbmmmmbb22ffffff]ff	chr19:1881004-1881266(-)$1	262	39	70	11.6599
:bb[ggggggg[bbmmmmbb]ggggggg]bb	chr1:2229579-2229842(+)$1	263	219	250	11.3003
gg$$$$$dddd[bbmmmmbbddddggggggg	chr8:144555411-144555656(-)$1	245	59	90	11.4364
!ggggggg!!ddddmmmmddddggggggg22	chr14:105626411-105626623(-)$1	212	87	118	12.0193
ffffff!!ccc[bbmmmmbb]ccc333ffff	chr9:139426834-139427064(-)$1	230	55	86	12.6910
!ffffffdddd[bbmmmmbbdddd22fffff	chr11:73090933-73091166(+)$1	233	188	219	11.0431
eeeee[ccc[ddddmmmmddddccc22eeee	chr19:5051570-5051822(+)$1	252	152	183	11.1345
:ggggggg[cccooooooccc333ggggggg	chr4:1318660-1318901(+)$1	241	182	213	10.4769
ggggggg[ccc[ccclllccc]cccgggggg	chr11:3063828-3064106(-)$1	278	244	275	12.4025
gggggg"""ddddaooooooa]ddddggggg	chr14:105623057-105623309(-)$1	252	219	250	10.1229
fffff[cccccc[bbmmmmbb]ccc]ccc]f	chr9:139719376-139719619(+)$1	243	76	107	10.3550
eeeeeccc[cccooooooccc]ccc]eeeee	chr8:54793976-54794261(+)$1	285	2	33	10.0346
ccggggggg[ddddmmmmddddggggggg44	chr1:1280155-1280417(-)$1	262	160	191	12.1731
b[dddd[ccc[cccmmmmccc]cccdddd]b	chr16:85661003-85661261(+)$1	258	49	80	11.3465
####ffffff!!bbmmmmbbffffff333ee	chr11:776592-776850(-)$1	258	215	246	11.4258
ddd[a"""bb[cccmmmmccc]bb22a]ddd	chr7:148580784-148581058(-)$1	274	212	243	11.5572
ggggggg"""ddddmmmmddddggggggg]c	chr7:127672412-127672672(+)$1	260	196	227	12.2472
!!ffffff[ddddammmma]dddd]ffffff	chr9:137307041-137307288(+)$1	247	155	186	10.8167
bffffffccc[cccmmmmcccccc22fffff	chr11:63913910-63914235(-)$1	325	236	267	12.1207
iiiiiiiii[ddddllldddd]iiiiiiiii	chr16:88990633-88990917(-)$1	284	129	160	10.8323

#otherMatches

#Seq PSSM
UGCACACGGUGACUCGGGGGUCACCGUGCAG	chr22:49960016-49960279(-)$1	263	124	155	13.2573
GCCCACAUCUAAGCCAGUGUGAGGAGUCAGG	chr19:3457058-3457325(+)$1	267	85	116	12.0239
cugggccugguggugugugccuguaguccca	chr17:76115663-76115925(-)$1	262	47	78	11.7013
GGCACGGGCCUUUUUAUGAGGGAGGAAGCCG	chr16:88838729-88838991(-)$1	262	86	117	11.7318
UCAGGUCCUGGGACAGAAGCCCUGCGGGACA	chr22:50627028-50627296(+)$1	268	184	215	11.5557
GGGCUCUGUCUGGuuguagcaucacagagcu	chr8:142426083-142426345(+)$1	262	154	185	13.8796
GGCUGCCAGCUGAGGCCACUUGCUUGGGUAG	chr11:63913806-63914065(-)$1	259	66	97	12.1207
GGGCGACUUCCCUGGGUCUAGGGGAGUGUUC	chr17:79877678-79877934(-)$1	256	201	232	12.4760
AUGAAGGCCCGGGACUGAUUCUGGGGAGUGG	chr9:130330388-130330660(-)$1	272	58	89	11.4766
UUCACCUGCAACCCCAAUGGGAUGCAUGAUG	chr8:140817296-140817551(-)$1	255	189	220	11.8233
CUGAGAGCCCAGACAUCUGCUCUUGGGCCAG	chr2:97549929-97550180(-)$1	251	160	191	10.1631
GAUGGUGACCCCGUUGAGAUGAGGGCCACUG	chr9:138974343-138974593(-)$1	250	215	246	14.2411
AUGGGGAGGCAAGCGUCUGUGGGUUCACCCG	chr17:80054961-80055237(-)$1	276	110	141	10.9997
ucagcuaggagccauguugccuccuagagga	chr19:56150464-56150736(+)$1	272	24	55	10.2356
CUCCUGCGCUCUGCACUGUGUGGAGGGCAGG	chr16:89361196-89361415(-)$1	219	111	142	10.4052
CUCCCCUCCUCAGAACCUUCUGGGGCUGGAG	chr21:46840475-46840710(+)$1	235	133	164	12.2676
AGCCGGGUCACAGGGAGCCAAGUGGGGAGGU	chr22:19785488-19785744(-)$1	256	83	114	11.8856
UGUGGGGGCUCCGGUAGCCCGGCAGCCCUCU	chr17:79971517-79971778(+)$1	261	33	64	12.2065
CACAACUCGGGCAGGCCUAUUGCCCGAGUUU	chr11:1999396-1999682(+)$1	286	178	209	11.0055
AUUUGAAAUCAUUGUCACCACUGGUUUAAGA	chr19:5061157-5061409(+)$1	252	173	204	10.3502
GGGGCAGGGCCACAUCUUUGUCCGUGUGCCG	chr22:23540477-23540781(+)$1	304	2	33	11.8914
UGGAGGUCAUGGCAUGGCUGUGGUGGAGGCC	chr14:105254182-105254493(-)$1	311	170	201	11.9788
CCCCUCGGCCUCGGUCCUUCGCGUUGUGGGG	chr19:54642131-54642424(+)$1	293	20	51	12.7903
GCUGGGCCCAGUCAUGGCUGACCUGGGGCCA	chr5:1335213-1335508(-)$1	295	88	119	11.8707
CUCAGCUGUCGCAGGCCCUGGAGGAGCUGGG	chr7:2041687-2041925(-)$1	238	170	201	11.7715
CUGGCUUUGCGGCAGGGGUGCAGCAGCAGUG	chr16:81553590-81553924(+)$1	334	19	50	12.2362
UCGUCAGGUUUUCUGCUCCGGUGAACUUGGA	chr19:4984389-4984633(+)$1	244	206	237	12.5705
AGAGGCGCGCGCGCgugugugugugugugug	chr14:103570040-103570302(+)$1	262	80	111	13.9259
CAGAAAAUGGCAUGCAGGCGGCCAUAUGGAU	chr15:29403545-29403800(+)$1	255	179	210	11.9185
GUGAGACGUCGGCAGGGGGCAGGUCUUCACA	chr9:139565761-139565998(+)$1	237	11	42	9.8730
CCCCUCUCCGCGCCUGCAGGUGCGGGGUGGG	chr1:975599-975854(+)$1	255	176	207	12.2234
GGGAUUGAGGGGCUGCCAGGCCCCUGGAGCU	chr9:139614897-139615132(+)$1	235	81	112	11.4697
aacagggucuuuggagcacgauggcccugca	chr1:54737140-54737431(-)$1	291	171	202	11.0569
GCCCAGAGGAUGGUAUUGGCCACGUUUGGCU	chr9:140073899-140074189(-)$1	290	185	216	11.4772
GAGCAGGACCUGCACCCCUGCCAGGUCCUGG	chr22:46973785-46974060(+)$1	275	48	79	13.2213
GCUUGUGUGGUGGGUCACUUCACCAGAGAAG	chr3:126716798-126717091(+)$1	293	253	284	12.8483
AGCGCUGGGAUGGCUAGAAGCGGCCUGUGCU	chr1:1556253-1556520(+)$1	267	115	146	11.1269
AGCUGUGGCCGCGCCUGGGCUGGGUCACCCU	chr19:1881004-1881266(-)$1	262	39	70	11.6599
AGGGAGUUGUGUUGACAUCAUCAUGGCUGCU	chr1:2229579-2229842(+)$1	263	219	250	11.3003
CUGAACACCAGUGAAGAUUCCUGGGGCCCAC	chr8:144555411-144555656(-)$1	245	59	90	11.4364
ACGGGGGUGGUUUGUGGACAGAGCCCUUGGG	chr14:105626411-105626623(-)$1	212	87	118	12.0193
CCGGGGAUGUGUCAUCUGUGUCAUCCACCCU	chr9:139426834-139427064(-)$1	230	55	86	12.6910
GGUGUCCUCCCUCACUGCUGGGGAAUGGGCA	chr11:73090933-73091166(+)$1	233	188	219	11.0431
GGGGGGUCAUCCUGCACCCAGGUGAAGCCCC	chr19:5051570-5051822(+)$1	252	152	183	11.1345
UGCGGCCGAGCCAGUUGGGGUACACGGCUGU	chr4:1318660-1318901(+)$1	241	182	213	10.4769
GGAAUGUGCUGGGCACGCUGUGCAGGCAUUC	chr11:3063828-3064106(-)$1	278	244	275	12.4025
UUGGGGAGUGGGCCAGCACAGUGUCCUCCCA	chr14:105623057-105623309(-)$1	252	219	250	10.1229
CUCCCUUCCCCUUGGAAUCCUUGGGUGGGCG	chr9:139719376-139719619(+)$1	243	76	107	10.3550
GAAAUCGCAUUGACCACCCGAAGCGUAUUUC	chr8:54793976-54794261(+)$1	285	2	33	10.0346
GAGGUGGGGACCCUGCCAGGGGCUCUGCUGU	chr1:1280155-1280417(-)$1	262	160	191	12.1731
AGGGCCGAGGGGCCUUUAGGUGUCUGGCUGU	chr16:85661003-85661261(+)$1	258	49	80	11.3465
guagcuccuCAAGUGUGGACGGGGAGAUGGG	chr11:776592-776850(-)$1	258	215	246	11.4258
GGGACGGGACAGACACAAGUUGGUGGGACCC	chr7:148580784-148581058(-)$1	274	212	243	11.5572
gggcccccUGGCUCUGAAGAGCGGGGCUCAg	chr7:127672412-127672672(+)$1	260	196	227	12.2472
GGAGCUGUAGCUUCAGGAGAAAGUGGCGGCU	chr9:137307041-137307288(+)$1	247	155	186	10.8167
GGCUGCCAGCUGAGGCCACUUGCUUGGGUAG	chr11:63913910-63914235(-)$1	325	236	267	12.1207
GCCUCCUUGUGGUCGGCGGCCCCAGGGAGGC	chr16:88990633-88990917(-)$1	284	129	160	10.8323

#DB
(((.((((((((((....))))))))))..)	chr22:49960016-49960279(-)$1	1	124	155	13.2573
((((...(((..((....))..)))....))	chr19:3457058-3457325(+)$1	1	85	116	12.0239
(((((.(((..(((....)))..))).))))	chr17:76115663-76115925(-)$1	1	47	78	11.7013
(((((((.(((((((...)))))))...)))	chr16:88838729-88838991(-)$1	1	86	117	11.7318
((..((...(((.(....)))).))..))))	chr22:50627028-50627296(+)$1	1	184	215	11.5557
(((((((((...((....))...))))))))	chr8:142426083-142426345(+)$1	1	154	185	13.8796
((((((((((.(((....))))))..)))))	chr11:63913806-63914065(-)$1	1	66	97	12.1207
((((.(((((((((....)))))))))))))	chr17:79877678-79877934(-)$1	1	201	232	12.4760
((.....(((((((....)))))))..))))	chr9:130330388-130330660(-)$1	1	58	89	11.4766
(((((.((((.(((....))).)))).).))	chr8:140817296-140817551(-)$1	1	189	220	11.8233
(((...((((((((....).)).))))))))	chr2:97549929-97550180(-)$1	1	160	191	10.1631
(((((((.((((((....))).))).)))))	chr9:138974343-138974593(-)$1	1	215	246	14.2411
..(((..(((..((....))..)))..)))(	chr17:80054961-80055237(-)$1	1	110	141	10.9997
((..(((((((.((...)).)))))))..)(	chr19:56150464-56150736(+)$1	1	24	55	10.2356
.((((((.(((((((...))))))).)))))	chr16:89361196-89361415(-)$1	1	111	142	10.4052
((((...(((((((....)))))))..))))	chr21:46840475-46840710(+)$1	1	133	164	12.2676
.(((...((((..(....)..))))...)))	chr22:19785488-19785744(-)$1	1	83	114	11.8856
(..(((((((((((....)))).))))))).	chr17:79971517-79971778(+)$1	1	33	64	12.2065
((.(((((((((((.....))))))))))).	chr11:1999396-1999682(+)$1	1	178	209	11.0055
((((.((((((.((....)).)))))).)))	chr19:5061157-5061409(+)$1	1	173	204	10.3502
((.(((.((..(((....))))).))).)))	chr22:23540477-23540781(+)$1	1	2	33	11.8914
(((...((((.(((....))).))))...))	chr14:105254182-105254493(-)$1	1	170	201	11.9788
((...((((..(((....))).)))).))))	chr19:54642131-54642424(+)$1	1	20	51	12.7903
(.(((.((((((((....))).))))).)))	chr5:1335213-1335508(-)$1	1	88	119	11.8707
(((((((.(..(((...)))..).)))))))	chr7:2041687-2041925(-)$1	1	170	201	11.7715
((.(((((((.(((....))).)))).))).	chr16:81553590-81553924(+)$1	1	19	50	12.2362
((..(((((((.(((...))).)))))))))	chr19:4984389-4984633(+)$1	1	206	237	12.5705
(.(.((((((((((....)))))))))).).	chr14:103570040-103570302(+)$1	1	80	111	13.9259
((....(((((.((....))))))).)))))	chr15:29403545-29403800(+)$1	1	179	210	11.9185
(((((((.(.(.(....).)).))).)))).	chr9:139565761-139565998(+)$1	1	11	42	9.8730
((((.(((((((((....))))))))).)))	chr1:975599-975854(+)$1	1	176	207	12.2234
((..((.(((((((....))))))).)).))	chr9:139614897-139615132(+)$1	1	81	112	11.4697
..(((((((.(((.....))).)))))))))	chr1:54737140-54737431(-)$1	1	171	202	11.0569
(((.(((.(.((((....))))).)))))).	chr9:140073899-140074189(-)$1	1	185	216	11.4772
(..(((((((((((....)).))))))))).	chr22:46973785-46974060(+)$1	1	48	79	13.2213
.(((.(.(((((((....))))))).).)))	chr3:126716798-126717091(+)$1	1	253	284	12.8483
(((((.(((.(.(((...))).)))))))))	chr1:1556253-1556520(+)$1	1	115	146	11.1269
((..((((((..((....))..)))))).))	chr19:1881004-1881266(-)$1	1	39	70	11.6599
.((.(((((((.((....)).))))))).))	chr1:2229579-2229842(+)$1	1	219	250	11.3003
((.....((((.((....)))))))))))))	chr8:144555411-144555656(-)$1	1	59	90	11.4364
.(((((((..((((....)))))))))))..	chr14:105626411-105626623(-)$1	1	87	118	12.0193
((((((..(((.((....)).)))...))))	chr9:139426834-139427064(-)$1	1	55	86	12.6910
.((((((((((.((....))))))..)))))	chr11:73090933-73091166(+)$1	1	188	219	11.0431
(((((.(((.((((....)))))))..))))	chr19:5051570-5051822(+)$1	1	152	183	11.1345
.(((((((.(((......)))...)))))))	chr4:1318660-1318901(+)$1	1	182	213	10.4769
(((((((.(((.(((...))).)))))))))	chr11:3063828-3064106(-)$1	1	244	275	12.4025
((((((...(((((......).)))))))))	chr14:105623057-105623309(-)$1	1	219	250	10.1229
(((((.((((((.((....)).))).))).)	chr9:139719376-139719619(+)$1	1	76	107	10.3550
((((((((.(((......))).))).)))))	chr8:54793976-54794261(+)$1	1	2	33	10.0346
(((((((((.((((....)))))))))))..	chr1:1280155-1280417(-)$1	1	160	191	12.1731
(.((((.(((.(((....))).))))))).)	chr16:85661003-85661261(+)$1	1	49	80	11.3465
....((((((..((....))))))))...))	chr11:776592-776850(-)$1	1	215	246	11.4258
(((.(...((.(((....))).))..).)))	chr7:148580784-148581058(-)$1	1	212	243	11.5572
(((((((...((((....))))))))))).)	chr7:127672412-127672672(+)$1	1	196	227	12.2472
..((((((.(((((....).)))).))))))	chr9:137307041-137307288(+)$1	1	155	186	10.8167
((((((((((.(((....))))))..)))))	chr11:63913910-63914235(-)$1	1	236	267	12.1207
(((((((((.((((...)))).)))))))))	chr16:88990633-88990917(-)$1	1	129	160	10.8323

#PSSM
g : 0.15	d : 0.14	c : 0.12	f : 0.10	e : 0.10	! : 0.08	b : 0.05	: : 0.05	h : 0.03	a : 0.03	# : 0.03	= : 0.01	F : 0.01	[ : 0.01	i : 0.01	
g : 0.19	f : 0.17	c : 0.15	d : 0.10	e : 0.10	! : 0.07	[ : 0.05	h : 0.03	= : 0.01	: : 0.01	a : 0.01	b : 0.01	# : 0.01	i : 0.01	
g : 0.17	f : 0.15	! : 0.12	d : 0.10	c : 0.10	e : 0.08	[ : 0.05	h : 0.03	$ : 0.03	# : 0.03	= : 0.01	" : 0.01	a : 0.01	b : 0.01	i : 0.01	
g : 0.19	f : 0.14	c : 0.10	[ : 0.08	d : 0.08	! : 0.08	e : 0.08	" : 0.05	= : 0.03	$ : 0.03	# : 0.03	i : 0.03	h : 0.01	
g : 0.24	f : 0.17	" : 0.10	c : 0.10	= : 0.07	[ : 0.07	b : 0.03	$ : 0.03	a : 0.03	i : 0.03	e : 0.03	h : 0.01	# : 0.01	d : 0.01	
g : 0.24	f : 0.15	" : 0.10	[ : 0.10	c : 0.08	= : 0.07	i : 0.07	b : 0.03	$ : 0.03	d : 0.03	! : 0.01	# : 0.01	a : 0.01	
g : 0.22	f : 0.14	c : 0.12	" : 0.10	= : 0.07	i : 0.07	d : 0.07	[ : 0.07	e : 0.05	$ : 0.03	! : 0.03	
g : 0.21	c : 0.17	[ : 0.12	d : 0.12	= : 0.07	" : 0.07	i : 0.07	f : 0.07	e : 0.05	b : 0.01	! : 0.01	
c : 0.21	g : 0.21	d : 0.12	= : 0.07	i : 0.07	" : 0.05	e : 0.05	f : 0.05	a : 0.05	[ : 0.05	b : 0.03	! : 0.01	
c : 0.21	g : 0.17	d : 0.14	[ : 0.12	! : 0.08	= : 0.05	i : 0.05	e : 0.05	f : 0.05	" : 0.03	b : 0.01	
d : 0.21	g : 0.15	! : 0.14	c : 0.14	[ : 0.12	= : 0.05	i : 0.05	e : 0.05	a : 0.03	" : 0.01	f : 0.01	
c : 0.31	[ : 0.19	d : 0.15	g : 0.10	! : 0.08	= : 0.05	i : 0.05	" : 0.01	b : 0.01	
c : 0.29	b : 0.24	d : 0.15	g : 0.10	= : 0.05	[ : 0.03	i : 0.03	o : 0.03	! : 0.01	a : 0.01	
c : 0.28	b : 0.24	d : 0.12	g : 0.10	a : 0.08	= : 0.05	i : 0.03	o : 0.03	m : 0.01	n : 0.01	
m : 0.75	l : 0.05	c : 0.05	o : 0.05	g : 0.03	n : 0.03	b : 0.01	
m : 0.77	l : 0.14	o : 0.05	n : 0.03	
m : 0.77	l : 0.14	o : 0.05	n : 0.03	
m : 0.75	l : 0.08	o : 0.05	n : 0.03	b : 0.01	c : 0.01	a : 0.01	d : 0.01	
c : 0.33	b : 0.22	d : 0.12	g : 0.10	a : 0.07	= : 0.03	i : 0.03	n : 0.01	] : 0.01	o : 0.01	m : 0.01	
c : 0.35	b : 0.22	d : 0.12	g : 0.10	= : 0.05	] : 0.05	i : 0.03	2 : 0.01	a : 0.01	o : 0.01	
c : 0.33	d : 0.17	g : 0.12	2 : 0.08	] : 0.07	= : 0.05	i : 0.03	b : 0.03	a : 0.03	3 : 0.01	e : 0.01	f : 0.01	
] : 0.29	d : 0.17	g : 0.14	2 : 0.08	c : 0.07	= : 0.05	i : 0.05	3 : 0.03	b : 0.03	f : 0.03	e : 0.01	
g : 0.22	c : 0.21	d : 0.15	i : 0.07	= : 0.05	] : 0.05	f : 0.05	a : 0.05	3 : 0.03	b : 0.03	e : 0.03	2 : 0.01	
c : 0.24	g : 0.24	d : 0.15	= : 0.07	i : 0.07	e : 0.05	f : 0.05	] : 0.05	b : 0.03	3 : 0.01	
g : 0.29	c : 0.22	d : 0.10	= : 0.07	2 : 0.07	i : 0.07	e : 0.05	f : 0.05	b : 0.01	3 : 0.01	] : 0.01	
g : 0.21	2 : 0.15	] : 0.14	d : 0.10	= : 0.07	c : 0.07	i : 0.07	f : 0.07	3 : 0.05	e : 0.03	4 : 0.01	
g : 0.26	f : 0.14	3 : 0.08	2 : 0.08	= : 0.07	] : 0.07	i : 0.07	e : 0.05	c : 0.05	d : 0.03	a : 0.03	4 : 0.01	b : 0.01	
g : 0.26	f : 0.15	e : 0.10	] : 0.10	= : 0.07	3 : 0.07	c : 0.07	d : 0.03	i : 0.03	4 : 0.01	h : 0.01	a : 0.01	2 : 0.01	b : 0.01	
g : 0.26	c : 0.15	f : 0.14	e : 0.08	] : 0.08	d : 0.08	2 : 0.03	= : 0.03	3 : 0.03	i : 0.03	4 : 0.01	h : 0.01	
g : 0.17	c : 0.17	f : 0.15	e : 0.12	d : 0.10	] : 0.05	2 : 0.03	h : 0.03	= : 0.03	a : 0.03	i : 0.03	b : 0.01	4 : 0.01	
f : 0.19	g : 0.15	e : 0.14	c : 0.14	d : 0.08	] : 0.07	2 : 0.05	h : 0.03	i : 0.03	4 : 0.03	b : 0.03	= : 0.01	

#score	667.2552705315628
#seq	57
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_CDS_m3_run1.txt

#BEAR
b[ddddnnnnndddd	chr19:47778057-47778359(+)$1	302	98	113	13.2697
%%ddddnnnnndddd	chr19:11256915-11257184(-)$1	269	204	219	12.9088
::ddddnnnnndddd	chrX:153276372-153276611(-)$1	239	52	67	11.9011
e:ddddnnnnndddd	chr15:90814672-90814982(+)$1	310	52	67	12.2646
[eeeeennnnneeee	chr6:32159417-32159659(-)$1	242	34	49	10.5187
ffddddnnnnndddd	chr19:51301568-51301818(-)$1	250	181	196	12.6015
ddddddnnnnndddd	chr16:2871327-2871612(+)$1	285	122	137	12.7353
!eeeeennnnneeee	chr19:49376716-49376987(+)$1	271	147	162	10.6872
a[ddddnnnnndddd	chr12:57910571-57910789(-)$1	218	28	43	13.5691
!!ddddnnnnndddd	chr17:76220517-76220742(+)$1	225	135	150	13.8914
!!ddddnnnnndddd	chr19:3539129-3539388(-)$1	259	64	79	13.8914
dddcccnnnnnccc]	chr12:54741725-54741933(+)$1	208	115	130	9.6790
d!!cccnnnnncccd	chr1:16202596-16202873(+)$1	277	27	42	10.3638
:ddddannnnna]dd	chr9:140110457-140110724(+)$1	267	229	244	10.6910
deeeeennnnneeee	chr17:38153971-38154280(+)$1	309	281	296	10.1241
&&ddddnnnnndddd	chr19:45912228-45912480(-)$1	252	195	210	12.8499
%%ddddnnnnndddd	chr1:15987588-15987853(+)$1	265	24	39	12.9088
c[ddddnnnnndddd	chr17:28849258-28849542(+)$1	284	233	248	13.3476
!eeeeennnnneeee	chr3:170584113-170584414(-)$1	301	139	154	10.6872
!!ddddnnnnndddd	chr19:45911595-45911845(-)$1	250	149	164	13.8914
b[ddddnnnnndddd	chr19:1585067-1585317(-)$1	250	65	80	13.2697
''ddddnnnnndddd	chr12:113624590-113624842(+)$1	252	206	221	12.8050
a[ddddnnnnndddd	chr12:57910641-57910894(-)$1	253	133	148	13.5691
!eeeeennnnneeee	chr18:12329022-12329314(-)$1	292	259	274	10.6872
!eeeeennnnneeee	chr17:80213207-80213442(-)$1	235	66	81	10.6872
::ddddnnnnndddd	chr14:103805008-103805247(+)$1	239	115	130	11.9011
"eeeeennnnneeee	chr17:420648-420902(-)$1	254	212	227	10.6768
""ddddnnnnndddd	chr12:133294480-133294741(+)$1	261	80	95	13.8241
!!ddddnnnnndddd	chr20:3765559-3765886(-)$1	327	286	301	13.8914
::ddddnnnnndddd	chr1:15987241-15987518(+)$1	277	167	182	11.9011
!!ddddnnnnndddd	chr1:203800704-203800954(+)$1	250	38	53	13.8914
""ddddnnnnndddd	chr1:32375584-32375814(-)$1	230	106	121	13.8241
a[ddddnnnnndddd	chr12:57910589-57910832(-)$1	243	71	86	13.5691
b[ddddnnnnndddd	chr16:31123628-31123964(+)$1	336	141	156	13.2697
++ddddnnnnndddd	chr12:56811296-56811603(-)$1	307	69	84	12.6179
e[ddddnnnnndddd	chr22:39131868-39132154(-)$1	286	31	46	13.2173
c:ddddnnnnndddd	chr20:25207120-25207390(+)$1	270	208	223	12.3949
$$ddddnnnnndddd	chr17:27400829-27401139(-)$1	310	143	158	13.5662
!!ddddnnnnndddd	chr16:28884845-28885128(+)$1	283	87	102	13.8914
ggddddnnnnndddd	chr14:104177277-104177591(-)$1	314	61	76	12.9500
!!ddddnnnnndddd	chr16:30681341-30681608(+)$1	267	189	204	13.8914
!eeeeennnnneeee	chr19:49376843-49377090(+)$1	247	20	35	10.6872
d!!cccnnnnnccc2	chr2:71215946-71216211(-)$1	265	227	242	9.5837
!!ddddnnnnndddd	chr5:180651132-180651466(+)$1	334	86	101	13.8914
[a[cccnnnnnccc]	chr9:136208413-136208732(-)$1	319	90	105	9.7830
bbddddnnnnndddd	chr19:6213260-6213492(-)$1	232	84	99	12.6789
!!ddddnnnnndddd	chr19:49377552-49377804(+)$1	252	150	165	13.8914
::ddddnnnnndddd	chr19:18679193-18679464(+)$1	271	236	251	11.9011

#otherMatches

#Seq PSSM
GGAGCCGAGUGGGCU	chr19:47778057-47778359(+)$1	302	98	113	13.2697
UCAAGGUUGGCCCuu	chr19:11256915-11257184(-)$1	269	204	219	12.9088
uguuucaaaaagaaa	chrX:153276372-153276611(-)$1	239	52	67	11.9011
UAGAGUCAGACACUC	chr15:90814672-90814982(+)$1	310	52	67	12.2646
UGGCUGAAGCCCAGU	chr6:32159417-32159659(-)$1	242	34	49	10.5187
AGGGCCCGCCAGGCC	chr19:51301568-51301818(-)$1	250	181	196	12.6015
UCGGCCCAAUCGGCC	chr16:2871327-2871612(+)$1	285	122	137	12.7353
GUGUCCCUAGAGGGC	chr19:49376716-49376987(+)$1	271	147	162	10.6872
GGGCUGGAAAGCAGC	chr12:57910571-57910789(-)$1	218	28	43	13.5691
UAAGAUGAUGGAUUU	chr17:76220517-76220742(+)$1	225	135	150	13.8914
AACCUGACACCCagg	chr19:3539129-3539388(-)$1	259	64	79	13.8914
CAAGAAUGUGUUUCU	chr12:54741725-54741933(+)$1	208	115	130	9.6790
AAUGUUUGCAUGACU	chr1:16202596-16202873(+)$1	277	27	42	10.3638
CAGGCCUCAUUGCGC	chr9:140110457-140110724(+)$1	267	229	244	10.6910
GGCUCAGAUUUUGGG	chr17:38153971-38154280(+)$1	309	281	296	10.1241
CUCCGGCUCCACUGG	chr19:45912228-45912480(-)$1	252	195	210	12.8499
AUCAGGCCAUAUCUG	chr1:15987588-15987853(+)$1	265	24	39	12.9088
AGCCUGACCAGCAGG	chr17:28849258-28849542(+)$1	284	233	248	13.3476
ACAAUCUUCGUGAUU	chr3:170584113-170584414(-)$1	301	139	154	10.6872
GGUGGGUUGCCCCCA	chr19:45911595-45911845(-)$1	250	149	164	13.8914
gggUCCGCCCGGGGC	chr19:1585067-1585317(-)$1	250	65	80	13.2697
CACCCCCUCAAGGGG	chr12:113624590-113624842(+)$1	252	206	221	12.8050
GGGCUGGAAAGCAGC	chr12:57910641-57910894(-)$1	253	133	148	13.5691
AUGGAAUGGUUUUCU	chr18:12329022-12329314(-)$1	292	259	274	10.6872
CUGGAGGACCUCUUC	chr17:80213207-80213442(-)$1	235	66	81	10.6872
GGCGUCGAAUGGAUG	chr14:103805008-103805247(+)$1	239	115	130	11.9011
UGGAAACCUGAUUUC	chr17:420648-420902(-)$1	254	212	227	10.6768
CUCUGCCCCCAGCAG	chr12:133294480-133294741(+)$1	261	80	95	13.8241
GAUUCAGACAGUGAG	chr20:3765559-3765886(-)$1	327	286	301	13.8914
GCCCGUCUAUAACGG	chr1:15987241-15987518(+)$1	277	167	182	11.9011
UUAUUUUCCAUAAAU	chr1:203800704-203800954(+)$1	250	38	53	13.8914
CUGUGCUGGUUGCAC	chr1:32375584-32375814(-)$1	230	106	121	13.8241
GGGCUGGAAAGCAGC	chr12:57910589-57910832(-)$1	243	71	86	13.5691
CCUCCAGAACUUGGA	chr16:31123628-31123964(+)$1	336	141	156	13.2697
AACGAUACCAGAUUG	chr12:56811296-56811603(-)$1	307	69	84	12.6179
CUCCUGAGCAGCAGG	chr22:39131868-39132154(-)$1	286	31	46	13.2173
CCCAAUAAAAGGUUG	chr20:25207120-25207390(+)$1	270	208	223	12.3949
UGACCUAUUUAAGGU	chr17:27400829-27401139(-)$1	310	143	158	13.5662
UCCCGGAAGAGCUGG	chr16:28884845-28885128(+)$1	283	87	102	13.8914
GGGCCUCCCACAGGC	chr14:104177277-104177591(-)$1	314	61	76	12.9500
GGCCUCUCUGUGGGG	chr16:30681341-30681608(+)$1	267	189	204	13.8914
GUGUCCCUAGAGGGC	chr19:49376843-49377090(+)$1	247	20	35	10.6872
GGGUCCACUGAGGGA	chr2:71215946-71216211(-)$1	265	227	242	9.5837
gaggCUGUGGGGGCU	chr5:180651132-180651466(+)$1	334	86	101	13.8914
CGUGUUUUCUUAACU	chr9:136208413-136208732(-)$1	319	90	105	9.7830
UGAGCUGGUGGAGCU	chr19:6213260-6213492(-)$1	232	84	99	12.6789
AGUGAUACAGGAUCA	chr19:49377552-49377804(+)$1	252	150	165	13.8914
ACGGGCGAAUAGCCC	chr19:18679193-18679464(+)$1	271	236	251	11.9011

#DB
(.((((.....))))	chr19:47778057-47778359(+)$1	1	98	113	13.2697
..((((.....))))	chr19:11256915-11257184(-)$1	1	204	219	12.9088
..((((.....))))	chrX:153276372-153276611(-)$1	1	52	67	11.9011
).((((.....))))	chr15:90814672-90814982(+)$1	1	52	67	12.2646
.(((((.....))))	chr6:32159417-32159659(-)$1	1	34	49	10.5187
))((((.....))))	chr19:51301568-51301818(-)$1	1	181	196	12.6015
))((((.....))))	chr16:2871327-2871612(+)$1	1	122	137	12.7353
.(((((.....))))	chr19:49376716-49376987(+)$1	1	147	162	10.6872
(.((((.....))))	chr12:57910571-57910789(-)$1	1	28	43	13.5691
..((((.....))))	chr17:76220517-76220742(+)$1	1	135	150	13.8914
..((((.....))))	chr19:3539129-3539388(-)$1	1	64	79	13.8914
((((((.....))).	chr12:54741725-54741933(+)$1	1	115	130	9.6790
(..(((.....))))	chr1:16202596-16202873(+)$1	1	27	42	10.3638
.(((((.....).))	chr9:140110457-140110724(+)$1	1	229	244	10.6910
)(((((.....))))	chr17:38153971-38154280(+)$1	1	281	296	10.1241
..((((.....))))	chr19:45912228-45912480(-)$1	1	195	210	12.8499
..((((.....))))	chr1:15987588-15987853(+)$1	1	24	39	12.9088
(.((((.....))))	chr17:28849258-28849542(+)$1	1	233	248	13.3476
.(((((.....))))	chr3:170584113-170584414(-)$1	1	139	154	10.6872
..((((.....))))	chr19:45911595-45911845(-)$1	1	149	164	13.8914
(.((((.....))))	chr19:1585067-1585317(-)$1	1	65	80	13.2697
..((((.....))))	chr12:113624590-113624842(+)$1	1	206	221	12.8050
(.((((.....))))	chr12:57910641-57910894(-)$1	1	133	148	13.5691
.(((((.....))))	chr18:12329022-12329314(-)$1	1	259	274	10.6872
.(((((.....))))	chr17:80213207-80213442(-)$1	1	66	81	10.6872
..((((.....))))	chr14:103805008-103805247(+)$1	1	115	130	11.9011
.(((((.....))))	chr17:420648-420902(-)$1	1	212	227	10.6768
..((((.....))))	chr12:133294480-133294741(+)$1	1	80	95	13.8241
..((((.....))))	chr20:3765559-3765886(-)$1	1	286	301	13.8914
..((((.....))))	chr1:15987241-15987518(+)$1	1	167	182	11.9011
..((((.....))))	chr1:203800704-203800954(+)$1	1	38	53	13.8914
..((((.....))))	chr1:32375584-32375814(-)$1	1	106	121	13.8241
(.((((.....))))	chr12:57910589-57910832(-)$1	1	71	86	13.5691
(.((((.....))))	chr16:31123628-31123964(+)$1	1	141	156	13.2697
..((((.....))))	chr12:56811296-56811603(-)$1	1	69	84	12.6179
(.((((.....))))	chr22:39131868-39132154(-)$1	1	31	46	13.2173
).((((.....))))	chr20:25207120-25207390(+)$1	1	208	223	12.3949
..((((.....))))	chr17:27400829-27401139(-)$1	1	143	158	13.5662
..((((.....))))	chr16:28884845-28885128(+)$1	1	87	102	13.8914
((((((.....))))	chr14:104177277-104177591(-)$1	1	61	76	12.9500
..((((.....))))	chr16:30681341-30681608(+)$1	1	189	204	13.8914
.(((((.....))))	chr19:49376843-49377090(+)$1	1	20	35	10.6872
(..(((.....))).	chr2:71215946-71216211(-)$1	1	227	242	9.5837
..((((.....))))	chr5:180651132-180651466(+)$1	1	86	101	13.8914
.(.(((.....))).	chr9:136208413-136208732(-)$1	1	90	105	9.7830
((((((.....))))	chr19:6213260-6213492(-)$1	1	84	99	12.6789
..((((.....))))	chr19:49377552-49377804(+)$1	1	150	165	13.8914
..((((.....))))	chr19:18679193-18679464(+)$1	1	236	251	11.9011

#PSSM
! : 0.29	: : 0.10	d : 0.10	b : 0.08	a : 0.06	" : 0.06	% : 0.04	e : 0.04	[ : 0.04	c : 0.04	f : 0.02	& : 0.02	' : 0.02	+ : 0.02	$ : 0.02	g : 0.02	
! : 0.22	[ : 0.16	e : 0.16	: : 0.12	d : 0.06	% : 0.04	" : 0.04	f : 0.02	& : 0.02	' : 0.02	+ : 0.02	$ : 0.02	g : 0.02	a : 0.02	b : 0.02	
d : 0.77	e : 0.16	! : 0.04	[ : 0.02	
d : 0.75	e : 0.16	c : 0.08	
d : 0.75	e : 0.16	c : 0.08	
d : 0.72	e : 0.16	c : 0.08	a : 0.02	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
d : 0.72	e : 0.16	c : 0.08	a : 0.02	
d : 0.72	e : 0.16	c : 0.08	] : 0.02	
d : 0.75	e : 0.16	c : 0.08	
d : 0.77	e : 0.16	] : 0.04	2 : 0.02	

#score	595.4962135732753
#seq	48
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF656IDO_XRCC6_transcript_m2_run2.txt

#BEAR
e[bb!!ffffffcccpppppppccc]ffffff22bb	chr3:171846878-171847121(+)$1	243	82	118	13.8508
d!!ccc"""bb[cccqqqqqqqqccc]bb22ccc22	chr14:23537103-23537356(-)$1	253	206	242	9.1436
dd"""ffffff[cccpppppppcccffffffdddd]	chr6:30711093-30711367(-)$1	274	166	202	14.1031
:eeeeeccc"""cccpppppppccc]ccc]eeeee:	chr5:140090793-140091021(+)$1	228	9	45	12.5450
da[eeeee[eeeeeooooooeeeee22eeeee]a]d	chr6:159047173-159047424(+)$1	251	6	42	10.6276
===========[cccpppppppccc]==========	chr17:18965299-18965552(+)$1	253	115	151	16.3558
c"""eeeeeaeeeeellleeeee]a22eeeee333c	chr6:16646110-16646349(-)$1	239	194	230	9.8442
:dddd[eeeeexxxxxxxxxxxxxxxeeeee333dd	chr2:42423843-42424116(+)$1	273	20	56	9.2431
hhh===========ssssssssss===========0	chr17:57915201-57915472(+)$1	271	188	224	9.7369
ddd!!ccc####cccpppppppccc22ccc]dddd]	chr1:155238210-155238464(-)$1	254	95	131	15.6660
ddd[ddddccc[cccqqqqqqqqccc]ccc333ddd	chr1:44736137-44736347(-)$1	210	75	111	10.3671
fdddd!!eeeeebbrrrrrrrrrbb22eeeee22dd	chr1:33478170-33478421(-)$1	251	108	144	13.4020
"""cccccc[eeeeepppppppeeeee]ccc]ccc3	chr3:171523628-171523877(-)$1	249	139	175	15.3271
iiiiii[eeeeecccpppppppccc]eeeee]iiii	chr15:99254245-99254486(+)$1	241	184	220	16.0255
d"""dddd[ddddrrrrrrrrrdddddddddddd]c	chr7:92284115-92284332(-)$1	217	178	214	13.9525
hhhhhhh!!ddddrrrrrrrrrdddd]hhhhhhhhg	chr3:184036867-184037123(+)$1	256	101	137	11.1628
ffff[ccc"""ddddpppppppdddd22ccc]ffff	chr5:78111190-78111433(-)$1	243	193	229	13.7044
f!!dddd"""fffffflllffffff22dddd]ffff	chr8:22267347-22267629(+)$1	282	119	155	8.0561
ffff####eeeeepppppppeeeee22ffffff22c	chr16:50600695-50600940(+)$1	245	94	130	11.2036
iiiiiieeeee[cccpppppppccc22eeeee]iii	chr2:118852834-118853092(+)$1	258	19	55	16.7276
b"""dddd[ffffffpppppppffffffdddd22bb	chrX:132942321-132942564(-)$1	243	83	119	13.4848
d"""dddd[ddddrrrrrrrrrdddddddddddd]c	chr7:92284077-92284315(-)$1	238	161	197	13.9525
gggg!!ffffff!!cccnnnnnccc22ffffffggg	chr8:22878691-22878949(-)$1	258	196	232	8.7606
[a####eeeeesssssssssseeeeeaffffffccc	chr2:101485812-101486064(+)$1	252	90	126	9.6602
%%%%dddd!!cccrrrrrrrrrccc333dddddddd	chr10:35095661-35095907(-)$1	246	202	238	13.2346
bb[dddd[eeeeerrrrrrrrreeeee]dddd]bb:	chr7:76183145-76183419(+)$1	274	79	115	12.6220
eeee!!eeeee[ddddnnnnndddd22eeeee4444	chr16:457185-457440(+)$1	255	191	227	9.3670
"""cccccc[eeeeepppppppeeeee]ccc]ccc3	chr3:171523677-171523889(-)$1	212	151	187	15.3271
++++dddd!!cccrrrrrrrrrccc22dddd>>>>>	chr17:15414483-15414761(-)$1	278	212	248	12.4681
gggg!!bb!!a[cccpppppppccc]a22bb]gggg	chr17:64216401-64216628(-)$1	227	118	154	15.2223
gggg!!bb!!a[cccpppppppccc]a22bb]gggg	chr17:64216428-64216656(-)$1	228	146	182	15.2223
gggggg[dddd[cccoooooocccdddd333ggggg	chrX:133013479-133013756(-)$1	277	96	132	9.8230
ff[cccccc[eeeeepppppppeeeee]ccc22ccc	chr2:97492725-97492975(+)$1	250	146	182	14.5475

#otherMatches

#Seq PSSM
uauguugcugggguuggucuggaacuccuggucuca	chr3:171846878-171847121(+)$1	243	82	118	13.8508
CCACAACUCUCCGAAGAGAAGUAUUCUGACCUUGCU	chr14:23537103-23537356(-)$1	253	206	242	9.1436
UUUAGGAGGUGACUGCAUCCUCCAGCAUCUCAACUC	chr6:30711093-30711367(-)$1	274	166	202	14.1031
CUUUGUGACGUAGGUCUUUCUCACCAGUCAAUAAAA	chr5:140090793-140091021(+)$1	228	9	45	12.5450
CCAUUGCUGCCAUUGGGGGAGAUGGGAGGCGAAGUG	chr6:159047173-159047424(+)$1	251	6	42	10.6276
agagggagagaacgcggucugagugguUUUUCCUUC	chr17:18965299-18965552(+)$1	253	115	151	16.3558
UUGCACCAUCCUGGGCUCCCCAGAGGAGUGGUAUUA	chr6:16646110-16646349(-)$1	239	194	230	9.8442
AGGAAAGCUAAAUCUAACCCACCAAAUUAGUAACUU	chr2:42423843-42424116(+)$1	273	20	56	9.2431
CUUGGUUUCUCCCAGACAUGUUGGUGGGAGAGAUUU	chr17:57915201-57915472(+)$1	271	188	224	9.7369
CUGUUGAGAAUUGACCUCUGUUGUCCACUCCCAGCU	chr1:155238210-155238464(-)$1	254	95	131	15.6660
UCUUGAGUCCUUGAGGAAGUGAAUUCUGGGCUUGCU	chr1:44736137-44736347(-)$1	210	75	111	10.3671
guugcccaggcuggucuugaacuccuaggcuuaagc	chr1:33478170-33478421(-)$1	251	108	144	13.4020
cuaccuuggcuuccaaacgugcugggauucacaggc	chr3:171523628-171523877(-)$1	249	139	175	15.3271
UGGCUACCUUGAGUUCAACAUAAGCAUUAAGAUGGC	chr15:99254245-99254486(+)$1	241	184	220	16.0255
auuuggugacacagguuuguuaugugcaccuggaaa	chr7:92284115-92284332(-)$1	217	178	214	13.9525
UGUUUCUUUGCCCCUUUGUAAAGGGCUGGAGACAGG	chr3:184036867-184037123(+)$1	256	101	137	11.1628
UGGCCUGCUCUCUUCUGUUCUUGAAGCUGCAAGCCA	chr5:78111190-78111433(-)$1	243	193	229	13.7044
UUUGGUUUUCUCAGUGUCUCACUGAUUAACCUGGCC	chr8:22267347-22267629(+)$1	282	119	155	8.0561
AAGACACUUUUGGGAAUCCACCAAAUCUCUUGUGUC	chr16:50600695-50600940(+)$1	245	94	130	11.2036
CUGUUAGUAUUCAUAGAAAACAUAUCAAAUAUGUGA	chr2:118852834-118853092(+)$1	258	19	55	16.7276
UGUUGAAUAGUUUUUCUAUUUAGAAAGCAUUCUAAG	chrX:132942321-132942564(-)$1	243	83	119	13.4848
auuuggugacacagguuuguuaugugcaccuggaaa	chr7:92284077-92284315(-)$1	238	161	197	13.9525
AUGGCUGACGCAUUAAGGUUUUCUUCUUGUGUCCUG	chr8:22878691-22878949(-)$1	258	196	232	8.7606
aggauuuguguuuguucugcuacacaccugcaggcu	chr2:101485812-101486064(+)$1	252	90	126	9.6602
AUACAGGGUCCAGGACCUCUUACUGCUUCCCUCCAU	chr10:35095661-35095907(-)$1	246	202	238	13.2346
GGAGACAGCCAUUGUUUCAAGAAAUGGGUGUUGCCU	chr7:76183145-76183419(+)$1	274	79	115	12.6220
CAGGCCGAGGCUGCAGGGCUGCUGUCUGCCUCUUUA	chr16:457185-457440(+)$1	255	191	227	9.3670
cuaccuuggcuuccaaacgugcugggauucacaggc	chr3:171523677-171523889(-)$1	212	151	187	15.3271
ucuuugaauuuggucuuguauuuuauuuucauaaaa	chr17:15414483-15414761(-)$1	278	212	248	12.4681
ucccgaugaaugagaccuggcuucugacccaaggga	chr17:64216401-64216628(-)$1	227	118	154	15.2223
ucccgaugaaugagaccuggcuucugacccaaggga	chr17:64216428-64216656(-)$1	228	146	182	15.2223
ggguuucaccauguuggccaaggcuggucuugaacu	chrX:133013479-133013756(-)$1	277	96	132	9.8230
GGGUCAUGGGAGAGACACCUCCUCUCUGCCAGAUGA	chr2:97492725-97492975(+)$1	250	146	182	14.5475

#DB
(.((..(((((((((.......))).))))))..))	chr3:171846878-171847121(+)$1	1	82	118	13.8508
(..(((...((.(((........))).))..)))..	chr14:23537103-23537356(-)$1	1	206	242	9.1436
((...((((((.(((.......))))))))))))).	chr6:30711093-30711367(-)$1	1	166	202	14.1031
.((((((((...(((.......))).))).))))).	chr5:140090793-140091021(+)$1	1	9	45	12.5450
((.(((((.(((((......)))))..))))).).)	chr6:159047173-159047424(+)$1	1	6	42	10.6276
(((((((((((.(((.......))).))))))))))	chr17:18965299-18965552(+)$1	1	115	151	16.3558
(...(((((((((((...))))).)..)))))...)	chr6:16646110-16646349(-)$1	1	194	230	9.8442
.((((.(((((...............)))))...))	chr2:42423843-42424116(+)$1	1	20	56	9.2431
((((((((((((((..........))))))))))).	chr17:57915201-57915472(+)$1	1	188	224	9.7369
(((..(((....(((.......)))..))).)))).	chr1:155238210-155238464(-)$1	1	95	131	15.6660
(((.(((((((.(((........))).)))...)))	chr1:44736137-44736347(-)$1	1	75	111	10.3671
(((((..(((((((.........))..)))))..))	chr1:33478170-33478421(-)$1	1	108	144	13.4020
...((((((.(((((.......))))).))).))).	chr3:171523628-171523877(-)$1	1	139	175	15.3271
((((((.((((((((.......))).))))).))))	chr15:99254245-99254486(+)$1	1	184	220	16.0255
(...((((.((((.........)))))))))))).)	chr7:92284115-92284332(-)$1	1	178	214	13.9525
(((((((..((((.........)))).)))))))))	chr3:184036867-184037123(+)$1	1	101	137	11.1628
((((.(((...((((.......))))..))).))))	chr5:78111190-78111433(-)$1	1	193	229	13.7044
(..((((...((((((...))))))..)))).))))	chr8:22267347-22267629(+)$1	1	119	155	8.0561
((((....(((((.......)))))..))))))..)	chr16:50600695-50600940(+)$1	1	94	130	11.2036
(((((((((((.(((.......)))..))))).)))	chr2:118852834-118853092(+)$1	1	19	55	16.7276
(...((((.((((((.......))))))))))..))	chrX:132942321-132942564(-)$1	1	83	119	13.4848
(...((((.((((.........)))))))))))).)	chr7:92284077-92284315(-)$1	1	161	197	13.9525
((((..((((((..(((.....)))..)))))))))	chr8:22878691-22878949(-)$1	1	196	232	8.7606
.(....(((((..........)))))))))))))))	chr2:101485812-101486064(+)$1	1	90	126	9.6602
....((((..(((.........)))...))))))))	chr10:35095661-35095907(-)$1	1	202	238	13.2346
((.((((.(((((.........))))).)))).)).	chr7:76183145-76183419(+)$1	1	79	115	12.6220
((((..(((((.((((.....))))..)))))....	chr16:457185-457440(+)$1	1	191	227	9.3670
...((((((.(((((.......))))).))).))).	chr3:171523677-171523889(-)$1	1	151	187	15.3271
....((((..(((.........)))..)))).....	chr17:15414483-15414761(-)$1	1	212	248	12.4681
((((..((..(.(((.......))).)..)).))))	chr17:64216401-64216628(-)$1	1	118	154	15.2223
((((..((..(.(((.......))).)..)).))))	chr17:64216428-64216656(-)$1	1	146	182	15.2223
((((((.((((.(((......)))))))...)))))	chrX:133013479-133013756(-)$1	1	96	132	9.8230
((.((((((.(((((.......))))).)))..)))	chr2:97492725-97492975(+)$1	1	146	182	14.5475

#PSSM
d : 0.21	f : 0.15	g : 0.12	e : 0.06	: : 0.06	h : 0.06	" : 0.06	i : 0.06	b : 0.06	= : 0.03	c : 0.03	[ : 0.03	% : 0.03	+ : 0.03	
" : 0.18	d : 0.15	g : 0.12	f : 0.09	! : 0.06	e : 0.06	a : 0.06	h : 0.06	i : 0.06	[ : 0.03	= : 0.03	% : 0.03	b : 0.03	+ : 0.03	
" : 0.21	d : 0.12	g : 0.12	[ : 0.09	! : 0.06	e : 0.06	h : 0.06	i : 0.06	f : 0.06	b : 0.03	= : 0.03	# : 0.03	% : 0.03	+ : 0.03	
" : 0.15	c : 0.12	d : 0.12	g : 0.12	e : 0.09	= : 0.06	i : 0.06	f : 0.06	b : 0.03	! : 0.03	[ : 0.03	h : 0.03	# : 0.03	% : 0.03	+ : 0.03	
d : 0.30	! : 0.18	c : 0.12	e : 0.09	= : 0.06	i : 0.06	# : 0.06	" : 0.03	h : 0.03	[ : 0.03	g : 0.03	
d : 0.24	! : 0.18	c : 0.18	e : 0.09	= : 0.06	i : 0.06	# : 0.06	f : 0.03	[ : 0.03	h : 0.03	g : 0.03	
d : 0.24	c : 0.18	e : 0.18	f : 0.09	= : 0.06	[ : 0.06	b : 0.06	" : 0.03	! : 0.03	h : 0.03	# : 0.03	
e : 0.24	d : 0.21	c : 0.18	f : 0.09	" : 0.06	= : 0.06	b : 0.06	! : 0.03	# : 0.03	[ : 0.03	
e : 0.27	c : 0.15	! : 0.15	[ : 0.12	f : 0.09	" : 0.09	= : 0.06	# : 0.03	d : 0.03	
e : 0.27	f : 0.12	d : 0.12	! : 0.12	" : 0.09	[ : 0.09	= : 0.06	b : 0.03	a : 0.03	# : 0.03	c : 0.03	
e : 0.39	f : 0.15	d : 0.12	c : 0.09	" : 0.06	= : 0.06	a : 0.06	b : 0.03	# : 0.03	
[ : 0.27	e : 0.27	f : 0.12	d : 0.12	c : 0.06	" : 0.03	x : 0.03	= : 0.03	# : 0.03	s : 0.03	
c : 0.42	e : 0.21	d : 0.15	f : 0.06	x : 0.03	= : 0.03	b : 0.03	! : 0.03	s : 0.03	
c : 0.36	r : 0.18	e : 0.15	d : 0.06	f : 0.06	x : 0.03	= : 0.03	b : 0.03	p : 0.03	! : 0.03	s : 0.03	
c : 0.39	r : 0.21	e : 0.12	s : 0.06	d : 0.06	f : 0.06	o : 0.03	x : 0.03	p : 0.03	
p : 0.45	r : 0.21	q : 0.06	o : 0.06	s : 0.06	l : 0.03	x : 0.03	f : 0.03	c : 0.03	d : 0.03	
p : 0.45	r : 0.21	q : 0.06	o : 0.06	l : 0.06	s : 0.06	x : 0.03	c : 0.03	n : 0.03	
p : 0.45	r : 0.21	q : 0.06	o : 0.06	l : 0.06	s : 0.06	n : 0.06	x : 0.03	
p : 0.45	r : 0.21	q : 0.06	o : 0.06	s : 0.06	n : 0.06	e : 0.03	x : 0.03	l : 0.03	
p : 0.45	r : 0.21	q : 0.06	o : 0.06	s : 0.06	n : 0.06	e : 0.03	x : 0.03	f : 0.03	
p : 0.42	r : 0.21	e : 0.09	q : 0.06	s : 0.06	n : 0.06	x : 0.03	f : 0.03	o : 0.03	
p : 0.42	r : 0.21	e : 0.12	q : 0.06	x : 0.03	s : 0.03	f : 0.03	n : 0.03	d : 0.03	c : 0.03	
c : 0.39	e : 0.24	d : 0.15	q : 0.06	f : 0.06	x : 0.03	s : 0.03	r : 0.03	
c : 0.45	e : 0.21	d : 0.15	f : 0.06	] : 0.03	x : 0.03	s : 0.03	b : 0.03	
c : 0.42	e : 0.21	d : 0.18	f : 0.06	a : 0.03	x : 0.03	= : 0.03	b : 0.03	
2 : 0.30	] : 0.18	e : 0.15	d : 0.15	c : 0.06	f : 0.06	x : 0.03	= : 0.03	3 : 0.03	
2 : 0.33	e : 0.18	f : 0.09	] : 0.09	d : 0.09	a : 0.09	= : 0.06	c : 0.03	3 : 0.03	
e : 0.21	f : 0.18	d : 0.15	] : 0.12	c : 0.09	2 : 0.09	= : 0.06	b : 0.03	h : 0.03	3 : 0.03	
c : 0.21	e : 0.21	d : 0.21	f : 0.15	= : 0.06	2 : 0.06	b : 0.03	h : 0.03	3 : 0.03	
e : 0.21	d : 0.21	c : 0.18	f : 0.15	= : 0.06	b : 0.06	2 : 0.03	] : 0.03	h : 0.03	3 : 0.03	
e : 0.24	d : 0.21	f : 0.15	c : 0.12	= : 0.06	3 : 0.06	b : 0.06	2 : 0.03	] : 0.03	h : 0.03	
d : 0.21	] : 0.21	e : 0.18	f : 0.12	= : 0.06	3 : 0.06	c : 0.03	h : 0.03	> : 0.03	g : 0.03	2 : 0.03	
d : 0.15	f : 0.15	2 : 0.12	c : 0.09	] : 0.09	3 : 0.09	g : 0.09	= : 0.06	e : 0.03	i : 0.03	h : 0.03	4 : 0.03	> : 0.03	
d : 0.18	c : 0.15	2 : 0.12	g : 0.12	= : 0.06	3 : 0.06	i : 0.06	f : 0.06	e : 0.03	a : 0.03	h : 0.03	b : 0.03	4 : 0.03	> : 0.03	
d : 0.18	c : 0.12	g : 0.12	b : 0.09	] : 0.09	2 : 0.06	= : 0.06	i : 0.06	f : 0.06	e : 0.03	3 : 0.03	h : 0.03	4 : 0.03	> : 0.03	
c : 0.18	d : 0.15	g : 0.15	b : 0.06	] : 0.06	: : 0.06	3 : 0.06	i : 0.06	f : 0.06	2 : 0.03	= : 0.03	0 : 0.03	4 : 0.03	> : 0.03	

#score	414.7384619222941
#seq	33
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_CDS_m1_run1.txt

#BEAR
###bb[ddddwwwwwwwwwwwwwwddddb	chr4:187557803-187558051(-)$1	248	196	225	20.2348
##eeeee[bbwwwwwwwwwwwwwwbb]ee	chr16:28845327-28845602(+)$1	275	12	41	20.6475
G:::ddddyyyyyyyyyyyyyyyydddd:	chr1:169510844-169511055(-)$1	211	127	156	20.3009
c!!ddddzzzzzzzzzzzzzzzzzdddd2	chr6:16327591-16327892(-)$1	301	148	177	21.4265
e^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr11:61553449-61553698(+)$1	249	130	159	24.6409
cc[bb^^^^^^^^^^^^^^^^^^^^^^^b	chr9:33953189-33953496(-)$1	307	128	157	24.9013
eeeedddd^^^^^^^^^^^^^^^^^^^dd	chr2:65543767-65544083(-)$1	316	268	297	24.4955
c!!eeeee[auuuuuuuuuuuua]eeeee	chr1:27057688-27057942(+)$1	254	192	221	21.3097
=!!eeeeeyyyyyyyyyyyyyyyyeeeee	chr20:52192775-52193051(-)$1	276	90	119	25.5702
d!!dddd^^^^^^^^^^^^^^^^^^dddd	chr2:21228350-21228606(-)$1	256	203	232	25.3756
e^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr1:167358723-167359054(+)$1	331	55	84	24.6409
"""eeeeewwwwwwwwwwwwwweeeeeff	chr7:139298935-139299165(-)$1	230	140	169	21.7473
fffff^^^^^^^^^^^^^^^^^^^^ffff	chr6:142736988-142737245(+)$1	257	178	207	24.0029
####bb[cccwwwwwwwwwwwwwwccc]b	chr12:49444821-49445069(-)$1	248	146	175	20.8157
"""ccc^^^^^^^^^^^^^^^^^^^^^^^	chr16:72829169-72829409(-)$1	240	136	165	26.4487
:gggggggyyyyyyyyyyyyyyyyggggg	chr8:101718848-101719075(-)$1	227	2	31	23.7470
ee[eeeee^^^^^^^^^^^^^^^^^^^^^	chr1:154437564-154437916(+)$1	352	195	224	25.2264
ieeeee[bb^^^^^^^^^^^^^^^^^^^^	chr11:118376401-118376657(+)$1	256	25	54	23.5711
"""eeeee^^^^^^^^^^^^^^^^^^^^^	chr20:33328880-33329150(-)$1	270	58	87	26.1607
ggggggddddwwwwwwwwwwwwwwdddd]	chr12:9258833-9259038(-)$1	205	30	59	20.1906
cc[ddddzzzzzzzzzzzzzzzzzddddc	chr1:171553024-171553355(+)$1	331	24	53	21.1421
=ggggggg^^^^^^^^^^^^^^^^^^ggg	chr3:194168496-194168783(-)$1	287	234	263	24.9613
ff!!cccauuuuuuuuuuuua]cccffff	chr20:49510720-49510994(-)$1	274	16	45	19.4062
dddd[a[bbxxxxxxxxxxxxxxxbba]d	chr16:72822568-72822828(-)$1	260	17	46	20.8837
"""dddd^^^^^^^^^^^^^^^^^^^^dd	chr3:71102682-71103012(-)$1	330	58	87	26.2369
ff####bbyyyyyyyyyyyyyyyybb333	chr14:62204799-62205078(+)$1	279	100	129	23.8680
b!!eeeeeuuuuuuuuuuuueeeee4444	chr20:33330864-33331173(-)$1	309	90	119	19.5103
##ffffff^^^^^^^^^^^^^^^^^^^^^	chr2:128757784-128758026(-)$1	242	64	93	24.8010
eeeee[bbxxxxxxxxxxxxxxxbb]eee	chr12:12483243-12483481(-)$1	238	187	216	21.2638
:ccc[cccyyyyyyyyyyyyyyyyccc]c	chr4:73944438-73944695(-)$1	257	132	161	23.6364
$$gggggggxxxxxxxxxxxxxxxggggg	chr7:103191517-103191788(-)$1	271	130	159	22.1918
f!!ggggggguuuuuuuuuuuuggggggg	chr2:21224774-21224997(-)$1	223	26	55	19.3261
:::eeeeeyyyyyyyyyyyyyyyyeeeee	chr16:3533289-3533575(+)$1	286	215	244	22.2496
###dddd^^^^^^^^^^^^^^^^^^^^dd	chr11:59421372-59421643(-)$1	271	25	54	26.1667
[ggggggg^^^^^^^^^^^^^^^^^^^^g	chr9:34635415-34635734(-)$1	319	190	219	25.1912
:eeeee^^^^^^^^^^^^^^^^^^eeeee	chr4:155533454-155533684(-)$1	230	52	81	23.9272
b[gggggggauuuuuuuuuuuua]ggggg	chr12:7045869-7046126(+)$1	257	199	228	20.1741
ggggggg^^^^^^^^^^^^^^^^^^gggg	chr19:41811488-41811788(+)$1	300	65	94	25.0939
ggggggg^^^^^^^^^^^^^^^^^^gggg	chr20:2945539-2945832(+)$1	293	26	55	25.0939
"""dddd^^^^^^^^^^^^^^^^^^dddd	chr2:21231512-21231724(-)$1	212	147	176	25.8338
fffff^^^^^^^^^^^^^^^^^^^fffff	chr1:46499735-46499988(+)$1	253	143	172	23.4899
eeeee^^^^^^^^^^^^^^^^^^^eeeee	chr3:13383193-13383452(-)$1	259	75	104	24.5444
"""gggggggwwwwwwwwwwwwwwggggg	chr11:61732885-61733086(-)$1	201	127	156	21.2233
^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr15:50782412-50782744(+)$1	332	142	171	24.7425
eeee^^^^^^^^^^^^^^^^^^^^^eeee	chr11:33374885-33375184(+)$1	299	93	122	24.7576
"""eeeeewwwwwwwwwwwwwweeeeeee	chr2:21229055-21229264(-)$1	209	126	155	21.9933
^^^^^^^^^^^^^^^^^^^^^^^^dddd:	chr8:101721588-101721796(-)$1	208	45	74	23.6167
gg[a[cccyyyyyyyyyyyyyyyyccc]a	chr4:187524563-187524812(-)$1	249	12	41	24.9265
iiiiiiii^^^^^^^^^^^^^^^^^^^^^	chr4:71067878-71068117(+)$1	239	39	68	24.9440
ccc[ccczzzzzzzzzzzzzzzzzccc]c	chr1:116941574-116941806(+)$1	232	26	55	20.9850
####ddddbbuuuuuuuuuuuubb]dddd	chr2:174820013-174820267(-)$1	254	128	157	19.7288
gg[eeeeewwwwwwwwwwwwwweeeeegg	chr12:57006698-57006940(-)$1	242	66	95	21.2718
fff[ddddyyyyyyyyyyyyyyyydddd]	chr3:150176215-150176526(+)$1	311	43	72	23.9071
c####cccuuuuuuuuuuuuccccccbb]	chr12:53860940-53861174(+)$1	234	91	120	19.1488
h:gggggggwwwwwwwwwwwwwwgggggg	chr1:100547560-100547875(+)$1	315	268	297	19.3675
iiiiiiii^^^^^^^^^^^^^^^^^^iii	chr12:1889653-1889904(+)$1	251	67	96	24.6779
"""dddd^^^^^^^^^^^^^^^^^^dddd	chr1:27057616-27057883(+)$1	267	73	102	25.8338
:gggggggwwwwwwwwwwwwwwggggggg	chr2:21224540-21224770(-)$1	230	174	203	19.8045
cc[dddd^^^^^^^^^^^^^^^^^^^^^^	chr9:74312933-74313216(-)$1	283	160	189	25.5989
dd[dddd^^^^^^^^^^^^^^^^^^^^dd	chr11:34117923-34118210(+)$1	287	70	99	25.1320
=!!eeeee^^^^^^^^^^^^^^^^^^^^^	chr2:223806158-223806416(+)$1	258	11	40	25.9460
:gggggggwwwwwwwwwwwwwwggggggg	chr5:72798753-72798978(+)$1	225	169	198	19.8045
c!!ccc^^^^^^^^^^^^^^^^^^^^^^^	chrM:4629-4859(+)$1	230	43	72	26.1638
+gggggggyyyyyyyyyyyyyyyyggggg	chr3:52028034-52028242(-)$1	208	73	102	24.0998
e!!eeeeeuuuuuuuuuuuueeeee22ee	chr6:142688930-142689147(+)$1	217	96	125	18.9785
e^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr16:72822069-72822316(-)$1	247	57	86	24.6409
==!!ddddwwwwwwwwwwwwwwdddd22=	chr2:21234500-21234723(-)$1	223	21	50	20.7522
'''a[ddddwwwwwwwwwwwwwwdddda7	chrX:41091554-41091854(+)$1	300	190	219	18.9612
"""ccc^^^^^^^^^^^^^^^^^^^^ccc	chr1:160327935-160328212(+)$1	277	23	52	26.2015
gg####bbyyyyyyyyyyyyyyyybb22g	chr2:136479393-136479656(+)$1	263	5	34	23.6730

#otherMatches

#Seq PSSM
GAAAUCUCCUACAGCAUCGAAGACGGGAA	chr4:187557803-187558051(-)$1	248	196	225	20.2348
UAGAGGGGAAAAUACAAAAUAAAAUUGUC	chr16:28845327-28845602(+)$1	275	12	41	20.6475
GACCCUGAUCAAAUGCACUCUACUUCAGA	chr1:169510844-169511055(-)$1	211	127	156	20.3009
CCCCGUCCACCUCCACCCCCACCAGACGA	chr6:16327591-16327892(-)$1	301	148	177	21.4265
GACUACCACUUCCACUUCUACCGCCUGUG	chr11:61553449-61553698(+)$1	249	130	159	24.6409
UCUUCACAAAUUCGCAACACAACAAUCAG	chr9:33953189-33953496(-)$1	307	128	157	24.9013
GGAAUGGCCUCUUUCCCCUCCUAUUCAGC	chr2:65543767-65544083(-)$1	316	268	297	24.4955
CCCCGGCUCCAUACCCCUCCCAGCAGUCG	chr1:27057688-27057942(+)$1	254	192	221	21.3097
CGGCGCAGUCCAAAUCCCUGCCAUCUGCG	chr20:52192775-52193051(-)$1	276	90	119	25.5702
UGCCCUCAACCUACCAACACUCCCCGAGG	chr2:21228350-21228606(-)$1	256	203	232	25.3756
AUCUCUUCACGUGUUUUUCCUCAUUGUUU	chr1:167358723-167359054(+)$1	331	55	84	24.6409
UUGAGCAGCCACAGCCUCUCACCUGCUUC	chr7:139298935-139299165(-)$1	230	140	169	21.7473
CCGAUACAUUCUAAAAUUCUGCAUCAUUG	chr6:142736988-142737245(+)$1	257	178	207	24.0029
AAUCGCAUCUGUCCCCUGAGCUUGAGAAG	chr12:49444821-49445069(-)$1	248	146	175	20.8157
CAGUGCACAGCCAAACCAAACCCAAGAAA	chr16:72829169-72829409(-)$1	240	136	165	26.4487
AAAGAGCAAGAUAAAAAUACAAAAUGUUC	chr8:101718848-101719075(-)$1	227	2	31	23.7470
GGGGUCUGACAAUACCUCGAGCCACAACC	chr1:154437564-154437916(+)$1	352	195	224	25.2264
UUGGGGUCACUUAAUACUUCAUCUCACCG	chr11:118376401-118376657(+)$1	256	25	54	23.5711
UACACCUGUCUUUAUCAAUUCAUCCUCAA	chr20:33328880-33329150(-)$1	270	58	87	26.1607
GGGAGGUGAUAGAAUUUUAGAGACAUCAU	chr12:9258833-9259038(-)$1	205	30	59	20.1906
GAUGAAAUUAACUUCUAACAAUAUUUUCU	chr1:171553024-171553355(+)$1	331	24	53	21.1421
ACCUCAAUUAUUUAUcauaugcagcuauu	chr3:194168496-194168783(-)$1	287	234	263	24.9613
UCAUUUCCGCAAUGUCCAUAGUGAAGACU	chr20:49510720-49510994(-)$1	274	16	45	19.4062
GUCUUGAGCUUCAGCCCUACCCCUGCCCA	chr16:72822568-72822828(-)$1	260	17	46	20.8837
CUUCCUAUUUAUCCUUCAUUAACAUUCUA	chr3:71102682-71103012(-)$1	330	58	87	26.2369
GCAAUGUCUCCAUUACCCACCGCUGAAAC	chr14:62204799-62205078(+)$1	279	100	129	23.8680
CAUGUGGCACCCCCACCACAGCCACCACA	chr20:33330864-33331173(-)$1	309	90	119	19.5103
ACGAGAUGUCACAACAAGAAUCACACUAC	chr2:128757784-128758026(-)$1	242	64	93	24.8010
GUUUACAGAAAUCUCCAACCUAACUUUGA	chr12:12483243-12483481(-)$1	238	187	216	21.2638
CCUGCCCCAUCAUCAGUACCGUUAGGGUC	chr4:73944438-73944695(-)$1	257	132	161	23.6364
UUCUGCUGCCCCUCUGCUACCACAGCAGC	chr7:103191517-103191788(-)$1	271	130	159	22.1918
GCAAUUUCUGCACAGAAAUAUUCAGGAAU	chr2:21224774-21224997(-)$1	223	26	55	19.3261
UCUCCCCUAUUACUACUCCAUUCGAGGGG	chr16:3533289-3533575(+)$1	286	215	244	22.2496
UACUGACAACAUUCUUUAAAAUUUCAAGU	chr11:59421372-59421643(-)$1	271	25	54	26.1667
ACAGGGACAUACACCAUGCAGAUCCUGAG	chr9:34635415-34635734(-)$1	319	190	219	25.1912
AACAGAUAAUAAACUAGUGAAAUUUCUGU	chr4:155533454-155533684(-)$1	230	52	81	23.9272
GCACACCUGCCCCCACCUCACAGCCAGGU	chr12:7045869-7046126(+)$1	257	199	228	20.1741
UUUGGCUUUUUUCCCUCCACUUUCCAGCC	chr19:41811488-41811788(+)$1	300	65	94	25.0939
GAAGAGGCCAAAACUUCAAAUCCAACUUC	chr20:2945539-2945832(+)$1	293	26	55	25.0939
CAUAAUCCCAACUCUCAACCUUAAUGAUU	chr2:21231512-21231724(-)$1	212	147	176	25.8338
GCCUUUCCCCCCGAUCUCCCACUCAAGGC	chr1:46499735-46499988(+)$1	253	143	172	23.4899
UGAUGAAGCCCUUGACAACUACACCAUCA	chr3:13383193-13383452(-)$1	259	75	104	24.5444
CUUUGAAGAACUUUGCCAAAUACUUUCUU	chr11:61732885-61733086(-)$1	201	127	156	21.2233
UCCUUCCACCCCUCCAACUCAUAAAGCCA	chr15:50782412-50782744(+)$1	332	142	171	24.7425
UCUGUUACCAUCCCCAACCAUUCAUCAGA	chr11:33374885-33375184(+)$1	299	93	122	24.7576
CACUUCCAAAAUUGAUGAUAUCUGGAACC	chr2:21229055-21229264(-)$1	209	126	155	21.9933
ACCCUGUAAUCAACCCCUACCAGCCAGCA	chr8:101721588-101721796(-)$1	208	45	74	23.6167
UCACAGUGCAUAUCAGACAAGUCACACAG	chr4:187524563-187524812(-)$1	249	12	41	24.9265
AGAGCAUAUUUUCAACGAUCACUGAUUUA	chr4:71067878-71068117(+)$1	239	39	68	24.9440
CAGUAACAUUCCCGAGAUCACCCCGUUCC	chr1:116941574-116941806(+)$1	232	26	55	20.9850
UCUUCAGGGAAAUUAUAUCCAGUCGCCUG	chr2:174820013-174820267(-)$1	254	128	157	19.7288
GAUGAUAGUCAAACAUCAACCUCUAUCUU	chr12:57006698-57006940(-)$1	242	66	95	21.2718
GAACGAGAAAAUGCACUGUUAAAAUCUCU	chr3:150176215-150176526(+)$1	311	43	72	23.9071
CAACAGUCUCAUUUUCCCAUGACGCAUGG	chr12:53860940-53861174(+)$1	234	91	120	19.1488
AUGUACAUUCCAUUUCCAUCCACAGUGUA	chr1:100547560-100547875(+)$1	315	268	297	19.3675
GGAGCCAUUCUCUGCCUUUCUUUUUCAUG	chr12:1889653-1889904(+)$1	251	67	96	24.6779
CCAGACUCCAUAUUACAACCAGCAAAGUC	chr1:27057616-27057883(+)$1	267	73	102	25.8338
UAAAAGAAAUCUUCAUUUAUUCUUCUUUU	chr2:21224540-21224770(-)$1	230	174	203	19.8045
GGAUGUGAAAGAGUCAAGAUCCAAGCAGC	chr9:74312933-74313216(-)$1	283	160	189	25.5989
AUGUAUAUAUCUUUUUCUUUUUUAAAUUA	chr11:34117923-34118210(+)$1	287	70	99	25.1320
AACUUAAAUACCUUUUCUUCUUUUCUUUU	chr2:223806158-223806416(+)$1	258	11	40	25.9460
CGAAGCUCUGCCCAAACAAUGUGAGUUUC	chr5:72798753-72798978(+)$1	225	169	198	19.8045
UAAUCCUUCUAAUAGCUAUCCUCUUCAAC	chrM:4629-4859(+)$1	230	43	72	26.1638
GCCACCUGUACCUUUCCUGCUUUUCAGGU	chr3:52028034-52028242(-)$1	208	73	102	24.0998
UCAAUGCCAGCUACAUCAGAGGUAUGUAA	chr6:142688930-142689147(+)$1	217	96	125	18.9785
CAGUUCCUUCCUUACUUUGUACCAGGCUU	chr16:72822069-72822316(-)$1	247	57	86	24.6409
GCAUCUAUGAAAUUAACAACAAAUGGCCG	chr2:21234500-21234723(-)$1	223	21	50	20.7522
GAAGUAUCCCCACCUCAAACCAAGGAUCA	chrX:41091554-41091854(+)$1	300	190	219	18.9612
CUUCGGCAUCCUCAUCUUCUCCCUCAUCG	chr1:160327935-160328212(+)$1	277	23	52	26.2015
ccgccugccucagccucccaaauugcuag	chr2:136479393-136479656(+)$1	263	5	34	23.6730

#DB
...((.((((..............)))))	chr4:187557803-187558051(-)$1	1	196	225	20.2348
..(((((.((..............)).))	chr16:28845327-28845602(+)$1	1	12	41	20.6475
(...((((................)))).	chr1:169510844-169511055(-)$1	1	127	156	20.3009
(..((((.................)))).	chr6:16327591-16327892(-)$1	1	148	177	21.4265
(.......................)))))	chr11:61553449-61553698(+)$1	1	130	159	24.6409
((.((.......................)	chr9:33953189-33953496(-)$1	1	128	157	24.9013
((((((((...................))	chr2:65543767-65544083(-)$1	1	268	297	24.4955
(..(((((.(............).)))))	chr1:27057688-27057942(+)$1	1	192	221	21.3097
(..(((((................)))))	chr20:52192775-52193051(-)$1	1	90	119	25.5702
(..((((..................))))	chr2:21228350-21228606(-)$1	1	203	232	25.3756
(.......................)))))	chr1:167358723-167359054(+)$1	1	55	84	24.6409
...(((((..............)))))))	chr7:139298935-139299165(-)$1	1	140	169	21.7473
(((((....................))))	chr6:142736988-142737245(+)$1	1	178	207	24.0029
....((.(((..............))).)	chr12:49444821-49445069(-)$1	1	146	175	20.8157
...(((.......................	chr16:72829169-72829409(-)$1	1	136	165	26.4487
.(((((((................)))))	chr8:101718848-101719075(-)$1	1	2	31	23.7470
((.(((((.....................	chr1:154437564-154437916(+)$1	1	195	224	25.2264
((((((.((....................	chr11:118376401-118376657(+)$1	1	25	54	23.5711
...(((((.....................	chr20:33328880-33329150(-)$1	1	58	87	26.1607
((((((((((..............)))).	chr12:9258833-9259038(-)$1	1	30	59	20.1906
((.((((.................)))))	chr1:171553024-171553355(+)$1	1	24	53	21.1421
)(((((((..................)))	chr3:194168496-194168783(-)$1	1	234	263	24.9613
((..((((............).)))))))	chr20:49510720-49510994(-)$1	1	16	45	19.4062
((((.(.((...............))).)	chr16:72822568-72822828(-)$1	1	17	46	20.8837
...((((....................))	chr3:71102682-71103012(-)$1	1	58	87	26.2369
((....((................))...	chr14:62204799-62205078(+)$1	1	100	129	23.8680
(..(((((............)))))....	chr20:33330864-33331173(-)$1	1	90	119	19.5103
..((((((.....................	chr2:128757784-128758026(-)$1	1	64	93	24.8010
(((((.((...............)).)))	chr12:12483243-12483481(-)$1	1	187	216	21.2638
.(((.(((................))).)	chr4:73944438-73944695(-)$1	1	132	161	23.6364
..(((((((...............)))))	chr7:103191517-103191788(-)$1	1	130	159	22.1918
(..(((((((............)))))))	chr2:21224774-21224997(-)$1	1	26	55	19.3261
...(((((................)))))	chr16:3533289-3533575(+)$1	1	215	244	22.2496
...((((....................))	chr11:59421372-59421643(-)$1	1	25	54	26.1667
.(((((((....................)	chr9:34635415-34635734(-)$1	1	190	219	25.1912
.(((((..................)))))	chr4:155533454-155533684(-)$1	1	52	81	23.9272
(.((((((((............).)))))	chr12:7045869-7046126(+)$1	1	199	228	20.1741
(((((((..................))))	chr19:41811488-41811788(+)$1	1	65	94	25.0939
(((((((..................))))	chr20:2945539-2945832(+)$1	1	26	55	25.0939
...((((..................))))	chr2:21231512-21231724(-)$1	1	147	176	25.8338
(((((...................)))))	chr1:46499735-46499988(+)$1	1	143	172	23.4899
(((((...................)))))	chr3:13383193-13383452(-)$1	1	75	104	24.5444
...(((((((..............)))))	chr11:61732885-61733086(-)$1	1	127	156	21.2233
........................)))))	chr15:50782412-50782744(+)$1	1	142	171	24.7425
((((.....................))))	chr11:33374885-33375184(+)$1	1	93	122	24.7576
...(((((..............)))))))	chr2:21229055-21229264(-)$1	1	126	155	21.9933
........................)))).	chr8:101721588-101721796(-)$1	1	45	74	23.6167
((.(.(((................))).)	chr4:187524563-187524812(-)$1	1	12	41	24.9265
((((((((.....................	chr4:71067878-71068117(+)$1	1	39	68	24.9440
(((.(((.................))).)	chr1:116941574-116941806(+)$1	1	26	55	20.9850
....((((((............)).))))	chr2:174820013-174820267(-)$1	1	128	157	19.7288
((.(((((..............)))))))	chr12:57006698-57006940(-)$1	1	66	95	21.2718
(((.((((................)))).	chr3:150176215-150176526(+)$1	1	43	72	23.9071
(....(((............)))))))).	chr12:53860940-53861174(+)$1	1	91	120	19.1488
).(((((((..............))))))	chr1:100547560-100547875(+)$1	1	268	297	19.3675
((((((((..................)))	chr12:1889653-1889904(+)$1	1	67	96	24.6779
...((((..................))))	chr1:27057616-27057883(+)$1	1	73	102	25.8338
.(((((((..............)))))))	chr2:21224540-21224770(-)$1	1	174	203	19.8045
((.((((......................	chr9:74312933-74313216(-)$1	1	160	189	25.5989
((.((((....................))	chr11:34117923-34118210(+)$1	1	70	99	25.1320
(..(((((.....................	chr2:223806158-223806416(+)$1	1	11	40	25.9460
.(((((((..............)))))))	chr5:72798753-72798978(+)$1	1	169	198	19.8045
(..(((.......................	chrM:4629-4859(+)$1	1	43	72	26.1638
.(((((((................)))))	chr3:52028034-52028242(-)$1	1	73	102	24.0998
(..(((((............)))))..))	chr6:142688930-142689147(+)$1	1	96	125	18.9785
(.......................)))))	chr16:72822069-72822316(-)$1	1	57	86	24.6409
((..((((..............))))..)	chr2:21234500-21234723(-)$1	1	21	50	20.7522
...(.((((..............))))).	chrX:41091554-41091854(+)$1	1	190	219	18.9612
...(((....................)))	chr1:160327935-160328212(+)$1	1	23	52	26.2015
((....((................))..)	chr2:136479393-136479656(+)$1	1	5	34	23.6730

#PSSM
e : 0.12	" : 0.12	c : 0.11	# : 0.08	f : 0.08	: : 0.08	g : 0.08	= : 0.05	d : 0.04	i : 0.04	b : 0.02	^ : 0.02	G : 0.01	$ : 0.01	[ : 0.01	h : 0.01	+ : 0.01	' : 0.01	
g : 0.17	! : 0.12	" : 0.12	# : 0.10	e : 0.10	^ : 0.07	c : 0.07	f : 0.07	: : 0.04	d : 0.02	i : 0.02	$ : 0.01	[ : 0.01	= : 0.01	' : 0.01	
g : 0.17	! : 0.15	" : 0.12	# : 0.10	e : 0.10	[ : 0.10	^ : 0.07	f : 0.05	: : 0.02	c : 0.02	i : 0.02	d : 0.01	' : 0.01	
e : 0.25	g : 0.20	d : 0.14	^ : 0.07	# : 0.07	c : 0.05	f : 0.04	b : 0.02	! : 0.02	a : 0.02	i : 0.02	[ : 0.02	: : 0.01	
e : 0.22	d : 0.20	g : 0.20	^ : 0.08	c : 0.07	[ : 0.05	b : 0.04	f : 0.04	# : 0.04	i : 0.02	
d : 0.21	e : 0.20	g : 0.20	^ : 0.14	c : 0.11	[ : 0.02	# : 0.02	i : 0.02	b : 0.01	a : 0.01	f : 0.01	
d : 0.24	^ : 0.20	g : 0.18	e : 0.17	c : 0.07	[ : 0.04	b : 0.04	i : 0.02	f : 0.01	
^ : 0.32	e : 0.15	g : 0.15	d : 0.11	b : 0.07	c : 0.05	z : 0.04	i : 0.02	[ : 0.01	a : 0.01	f : 0.01	
^ : 0.45	y : 0.14	w : 0.08	g : 0.07	b : 0.05	u : 0.05	d : 0.04	z : 0.04	[ : 0.01	c : 0.01	x : 0.01	
^ : 0.47	y : 0.14	w : 0.11	u : 0.05	z : 0.04	x : 0.04	d : 0.02	b : 0.02	a : 0.02	g : 0.02	c : 0.01	
^ : 0.47	w : 0.18	y : 0.14	u : 0.11	z : 0.04	x : 0.04	
^ : 0.47	w : 0.18	y : 0.14	u : 0.11	z : 0.04	x : 0.04	
^ : 0.47	w : 0.18	y : 0.14	u : 0.11	z : 0.04	x : 0.04	
^ : 0.47	w : 0.18	y : 0.14	u : 0.11	z : 0.04	x : 0.04	
^ : 0.47	w : 0.18	y : 0.14	u : 0.11	z : 0.04	x : 0.04	
^ : 0.47	w : 0.18	y : 0.14	u : 0.11	z : 0.04	x : 0.04	
^ : 0.47	w : 0.18	y : 0.14	u : 0.11	z : 0.04	x : 0.04	
^ : 0.47	w : 0.18	y : 0.14	u : 0.11	z : 0.04	x : 0.04	
^ : 0.47	w : 0.18	y : 0.14	u : 0.11	z : 0.04	x : 0.04	
^ : 0.47	w : 0.18	y : 0.14	u : 0.11	z : 0.04	x : 0.04	
^ : 0.47	w : 0.18	y : 0.14	u : 0.05	z : 0.04	x : 0.04	e : 0.02	a : 0.01	c : 0.01	
^ : 0.47	w : 0.18	y : 0.14	u : 0.05	z : 0.04	x : 0.04	e : 0.02	] : 0.01	c : 0.01	
^ : 0.47	y : 0.14	w : 0.10	e : 0.07	z : 0.04	x : 0.04	g : 0.04	a : 0.02	c : 0.02	b : 0.01	d : 0.01	
^ : 0.47	y : 0.14	w : 0.07	e : 0.07	g : 0.05	z : 0.04	] : 0.02	c : 0.02	x : 0.02	b : 0.02	d : 0.02	
^ : 0.35	e : 0.20	d : 0.12	g : 0.12	c : 0.08	b : 0.07	f : 0.01	] : 0.01	
^ : 0.25	d : 0.18	e : 0.18	g : 0.15	c : 0.07	b : 0.05	f : 0.04	4 : 0.01	] : 0.01	2 : 0.01	
^ : 0.21	e : 0.20	d : 0.17	g : 0.17	c : 0.07	f : 0.04	2 : 0.04	] : 0.01	a : 0.01	3 : 0.01	4 : 0.01	b : 0.01	i : 0.01	
d : 0.21	e : 0.20	g : 0.18	^ : 0.15	] : 0.07	f : 0.05	2 : 0.02	3 : 0.01	4 : 0.01	b : 0.01	i : 0.01	a : 0.01	c : 0.01	
g : 0.21	e : 0.20	d : 0.12	^ : 0.12	f : 0.05	c : 0.05	b : 0.04	] : 0.04	: : 0.02	2 : 0.01	3 : 0.01	4 : 0.01	a : 0.01	i : 0.01	= : 0.01	7 : 0.01	

#score	1615.3316454721066
#seq	70
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_CDS_m3_run2.txt

#BEAR
iiiii[bboooooobb333iiiii	chr1:214815082-214815314(+)$1	232	166	190	12.3818
cccc[cccoooooocccccc333c	chr11:62296875-62297097(-)$1	222	175	199	10.3329
[eeeeebboooooobb]eeeee33	chr15:40913964-40914222(+)$1	258	119	143	10.4545
"""eeeeeooooooeeeeeggggg	chr11:62285119-62285382(-)$1	263	211	235	9.0003
=========nnnnn==========	chr3:160134046-160134300(+)$1	254	148	172	8.4667
ffff[cccooooooccc22fffff	chr11:62291322-62291604(-)$1	282	235	259	9.9509
dddeeeeebbmmmmbb333eeeee	chr3:47165799-47166032(-)$1	233	79	103	8.3726
========lll=============	chr11:62293173-62293427(-)$1	254	171	195	8.2289
!ccc!!cccmmmmccc22ccc22e	chr2:232325097-232325355(-)$1	258	225	249	8.3915
[a[eeeeeooooooeeeee]a]dd	chr12:46320559-46320862(-)$1	303	170	194	9.1692
fff[ddddoooooodddd4444ff	chr1:39800999-39801251(+)$1	252	220	244	8.7118
!!bb[cccoooooocccbb]dddd	chr16:20693536-20693802(+)$1	266	73	97	9.5336
eeeee[bboooooobb]eeeee]c	chr1:203766812-203767065(+)$1	253	107	131	10.7498
!!ddddoooooodddd22adddd[	chr2:55253888-55254152(-)$1	264	119	143	7.5049
bb[cccbbaooooooa]bb]ccc]	chr3:160141303-160141538(+)$1	235	38	62	8.4647
"""bb[annnnna]bb333a]ggg	chr11:62292795-62293047(-)$1	252	38	62	8.7096
eeee"""bbnnnnnbb333eeeee	chr11:62288128-62288380(-)$1	252	203	227	9.5615
fffff[cccmmmmccc22ffffff	chr3:37365721-37366022(+)$1	301	34	58	7.5023
+dddd[cccmmmmccc4444dddd	chr1:214819808-214820064(+)$1	256	221	245	7.9437
dd[cccbboooooobb]cccdddd	chr1:39799371-39799627(+)$1	256	175	199	10.4815
ccffffffooooooffffff22cc	chr3:37365549-37365808(+)$1	259	114	138	8.2237
fffff[cccmmmmccc22ffffff	chr3:37365626-37365911(+)$1	285	129	153	7.5023
#ccc!!bboooooobb22cccbbc	chr3:47161680-47161972(-)$1	292	141	165	11.2205
eeeee####bblllbb4444eeee	chr11:62290721-62290952(-)$1	231	8	32	8.5905
ddd!!ddddllldddd4444dddd	chr3:37366585-37366878(+)$1	293	256	280	7.1641
ccbb####bbmmmmbb4444bb]c	chr18:9256905-9257166(+)$1	261	16	40	8.4133
"""eeeeeooooooeeeee4444c	chr2:152320603-152320891(+)$1	288	222	246	9.5071
eeeeccc[bbmmmmbb333ccc22	chr15:40915379-40915642(+)$1	263	31	55	8.5302
ddddccc!!bblllbb22ccc]dd	chr19:4037212-4037479(+)$1	267	159	183	7.8859
d[bb[cccooooooccc22bb]dd	chrM:14220-14444(-)$1	224	80	104	9.8322
ccbb####bbmmmmbb4444bb]c	chr18:9256705-9256989(+)$1	284	216	240	8.4133
:dddd[bboooooobb22dddd::	chr2:152319890-152320149(+)$1	259	193	217	7.9468
"""bb[annnnna]bb333a]ggg	chr11:62293957-62294202(-)$1	245	41	65	8.7096
ddd[acccooooooccc]a]dddd	chr11:62292333-62292590(-)$1	257	124	148	10.2300
ffffffffooooooffffff]fff	chr3:47951870-47952128(-)$1	258	225	249	8.1194
ddd[a[a[bbmmmmbb]aa]dddd	chr7:148702218-148702471(-)$1	253	126	150	8.2544
c!!eeeeeooooooeeeee4444c	chr11:62291909-62292150(-)$1	241	148	172	9.4317
eeee"""bbnnnnnbb333eeeee	chr11:62295475-62295705(-)$1	230	100	124	9.5615
=====[abbmmmmbb]a]======	chr11:62300333-62300597(-)$1	264	119	143	8.1924

#otherMatches

#Seq PSSM
UUUAAACCUCAGAUGGAUCUUGAA	chr1:214815082-214815314(+)$1	232	166	190	12.3818
CCGAUGUGGACUUACACUUGAAAG	chr11:62296875-62297097(-)$1	222	175	199	10.3329
AUGUAUCUAAGGAAAGAAUACAGC	chr15:40913964-40914222(+)$1	258	119	143	10.4545
CAGGGGGUGUCAGUGCCCCAGACA	chr11:62285119-62285382(-)$1	263	211	235	9.0003
GAAAAAGAAGUAAGUUUUUUUUUU	chr3:160134046-160134300(+)$1	254	148	172	8.4667
GCCCAAGUAUGAACAUUGAGGGCC	chr11:62291322-62291604(-)$1	282	235	259	9.9509
GCACCAAAACAAAAGUUAAUUUGG	chr3:47165799-47166032(-)$1	233	79	103	8.3726
UUGAUGUCCCAGAUGUUAAUGUUC	chr11:62293173-62293427(-)$1	254	171	195	8.2289
AGGGACUUAAUACUGAAACCUGAU	chr2:232325097-232325355(-)$1	258	225	249	8.3915
AGUGGUCUAGGUCCAGAUCUCAUU	chr12:46320559-46320862(-)$1	303	170	194	9.1692
GAACAUGCAAACCAGCAUUUCUUU	chr1:39800999-39801251(+)$1	252	220	244	8.7118
ACGGCUGUGAUCAGACACCAGGAG	chr16:20693536-20693802(+)$1	266	73	97	9.5336
AUCUGGGAGGCCUGUUGCAGAUGC	chr1:203766812-203767065(+)$1	253	107	131	10.7498
AAGAUAGUGAUAUGUUGGCUGCUG	chr2:55253888-55254152(-)$1	264	119	143	7.5049
GUAGCUGACAACUUGGAUCAAGCC	chr3:160141303-160141538(+)$1	235	38	62	8.4647
CCCCAAGAUCCCCAUGCCUGACUU	chr11:62292795-62293047(-)$1	252	38	62	8.7096
GUCCAGAAGGGAAACUGAAGGGCC	chr11:62288128-62288380(-)$1	252	203	227	9.5615
CCAGCAGGCAUCUGCUAAGCUGGA	chr3:37365721-37366022(+)$1	301	34	58	7.5023
AUAGAAGGGAUGACCCAAAGUCUG	chr1:214819808-214820064(+)$1	256	221	245	7.9437
CUUGGUGGACGUUGCUGACCAGCC	chr1:39799371-39799627(+)$1	256	175	199	10.4815
CUUCUCUUGAAGGAAAGGGACAAG	chr3:37365549-37365808(+)$1	259	114	138	8.2237
CCAGCAGGCAUCUGCUAAGCUGGA	chr3:37365626-37365911(+)$1	285	129	153	7.5023
AGCAGGGAGAGACAUCAGUGCCCC	chr3:47161680-47161972(-)$1	292	141	165	11.2205
GGUCCAGAUGCAAAGCUGAAGGGC	chr11:62290721-62290952(-)$1	231	8	32	8.5905
GCAGCUAGUUGAACUGAAGAUGCU	chr3:37366585-37366878(+)$1	293	256	280	7.1641
AGUGACAACCCCAAGGCCUCCAGU	chr18:9256905-9257166(+)$1	261	16	40	8.4133
GAAAAUCAGUCACAUGAUUAUAAA	chr2:152320603-152320891(+)$1	288	222	246	9.5071
AGGAACACCAACAGUGAUAUGUAC	chr15:40915379-40915642(+)$1	263	31	55	8.5302
GCUCCUCUCGAAGAUCCUGAGCGA	chr19:4037212-4037479(+)$1	267	159	183	7.8859
UGUGGGUGAAAGAGUAUGAUGGGG	chrM:14220-14444(-)$1	224	80	104	9.8322
AGUGACAACCCCAAGGCCUCCAGU	chr18:9256705-9256989(+)$1	284	216	240	8.4133
GGAGCAUGACAAUACAAAGCUUAA	chr2:152319890-152320149(+)$1	259	193	217	7.9468
CCCCAAGAUCUCCAUGCCUGACUU	chr11:62293957-62294202(-)$1	245	41	65	8.7096
UCAAGGCCCAGACUGGCACCUGAA	chr11:62292333-62292590(-)$1	257	124	148	10.2300
UCCUUCAGUAGUAUCUGAGGAGAA	chr3:47951870-47952128(-)$1	258	225	249	8.1194
UGGGGAGGAUGUCAAUGCCGCCAU	chr7:148702218-148702471(-)$1	253	126	150	8.2544
CAGAAAUUGACUUGAAUUUGAAAG	chr11:62291909-62292150(-)$1	241	148	172	9.4317
GUCCAGAAGGGAAGCUGAAGGGCC	chr11:62295475-62295705(-)$1	230	100	124	9.5615
CUGCCUGAGAUUGCUACUGGUGGG	chr11:62300333-62300597(-)$1	264	119	143	8.1924

#DB
(((((.((......))...)))))	chr1:214815082-214815314(+)$1	1	166	190	12.3818
((((.(((......))))))...)	chr11:62296875-62297097(-)$1	1	175	199	10.3329
.(((((((......)).)))))..	chr15:40913964-40914222(+)$1	1	119	143	10.4545
...(((((......))))))))))	chr11:62285119-62285382(-)$1	1	211	235	9.0003
(((((((((.....))))))))))	chr3:160134046-160134300(+)$1	1	148	172	8.4667
((((.(((......)))..)))))	chr11:62291322-62291604(-)$1	1	235	259	9.9509
)))(((((((....))...)))))	chr3:47165799-47166032(-)$1	1	79	103	8.3726
((((((((...)))))))))))))	chr11:62293173-62293427(-)$1	1	171	195	8.2289
.(((..(((....)))..)))..)	chr2:232325097-232325355(-)$1	1	225	249	8.3915
.(.(((((......))))).).))	chr12:46320559-46320862(-)$1	1	170	194	9.1692
(((.((((......))))....))	chr1:39800999-39801251(+)$1	1	220	244	8.7118
..((.(((......))))).))))	chr16:20693536-20693802(+)$1	1	73	97	9.5336
(((((.((......)).))))).)	chr1:203766812-203767065(+)$1	1	107	131	10.7498
..((((......))))..)((((.	chr2:55253888-55254152(-)$1	1	119	143	7.5049
((.((((((......).)).))).	chr3:160141303-160141538(+)$1	1	38	62	8.4647
...((.(.....).))...).)))	chr11:62292795-62293047(-)$1	1	38	62	8.7096
((((...((.....))...)))))	chr11:62288128-62288380(-)$1	1	203	227	9.5615
(((((.(((....)))..))))))	chr3:37365721-37366022(+)$1	1	34	58	7.5023
.((((.(((....)))....))))	chr1:214819808-214820064(+)$1	1	221	245	7.9437
((.(((((......)).)))))))	chr1:39799371-39799627(+)$1	1	175	199	10.4815
((((((((......))))))..))	chr3:37365549-37365808(+)$1	1	114	138	8.2237
(((((.(((....)))..))))))	chr3:37365626-37365911(+)$1	1	129	153	7.5023
.(((..((......))..))))))	chr3:47161680-47161972(-)$1	1	141	165	11.2205
(((((....((...))....))))	chr11:62290721-62290952(-)$1	1	8	32	8.5905
(((..((((...))))....))))	chr3:37366585-37366878(+)$1	1	256	280	7.1641
((((....((....))....)).)	chr18:9256905-9257166(+)$1	1	16	40	8.4133
...(((((......)))))....)	chr2:152320603-152320891(+)$1	1	222	246	9.5071
(((((((.((....))...)))..	chr15:40915379-40915642(+)$1	1	31	55	8.5302
(((((((..((...))..))).))	chr19:4037212-4037479(+)$1	1	159	183	7.8859
(.((.(((......)))..)).))	chrM:14220-14444(-)$1	1	80	104	9.8322
((((....((....))....)).)	chr18:9256705-9256989(+)$1	1	216	240	8.4133
.((((.((......))..))))..	chr2:152319890-152320149(+)$1	1	193	217	7.9468
...((.(.....).))...).)))	chr11:62293957-62294202(-)$1	1	41	65	8.7096
(((.((((......))).).))))	chr11:62292333-62292590(-)$1	1	124	148	10.2300
((((((((......)))))).)))	chr3:47951870-47952128(-)$1	1	225	249	8.1194
(((.(.(.((....)).)).))))	chr7:148702218-148702471(-)$1	1	126	150	8.2544
(..(((((......)))))....)	chr11:62291909-62292150(-)$1	1	148	172	9.4317
((((...((.....))...)))))	chr11:62295475-62295705(-)$1	1	100	124	9.5615
(((((.(((....)).).))))))	chr11:62300333-62300597(-)$1	1	119	143	8.1924

#PSSM
d : 0.17	c : 0.12	f : 0.12	e : 0.12	" : 0.10	= : 0.07	! : 0.07	[ : 0.05	i : 0.02	b : 0.02	+ : 0.02	# : 0.02	: : 0.02	
d : 0.20	c : 0.15	e : 0.15	f : 0.12	" : 0.10	= : 0.07	! : 0.07	i : 0.02	a : 0.02	b : 0.02	[ : 0.02	
d : 0.20	e : 0.15	f : 0.15	" : 0.10	b : 0.10	c : 0.07	= : 0.07	[ : 0.07	i : 0.02	! : 0.02	
e : 0.28	b : 0.15	c : 0.12	f : 0.12	d : 0.10	= : 0.07	[ : 0.07	i : 0.02	! : 0.02	
e : 0.20	[ : 0.10	d : 0.10	c : 0.10	f : 0.10	= : 0.07	! : 0.07	b : 0.05	" : 0.05	# : 0.05	a : 0.05	i : 0.02	
[ : 0.25	c : 0.23	e : 0.15	d : 0.07	# : 0.07	= : 0.05	! : 0.05	" : 0.05	f : 0.05	
c : 0.28	b : 0.17	e : 0.12	a : 0.10	# : 0.07	= : 0.05	d : 0.05	" : 0.05	f : 0.05	o : 0.02	
b : 0.25	c : 0.23	e : 0.12	# : 0.07	= : 0.05	d : 0.05	n : 0.05	f : 0.05	[ : 0.05	o : 0.02	! : 0.02	
o : 0.48	b : 0.20	c : 0.10	n : 0.05	= : 0.02	l : 0.02	a : 0.02	# : 0.02	d : 0.02	! : 0.02	
o : 0.51	b : 0.17	n : 0.12	m : 0.12	l : 0.05	
o : 0.51	m : 0.25	n : 0.12	l : 0.05	b : 0.05	
o : 0.51	m : 0.25	n : 0.12	l : 0.07	= : 0.02	
o : 0.48	m : 0.25	n : 0.07	d : 0.05	a : 0.05	l : 0.05	= : 0.02	
o : 0.48	m : 0.12	c : 0.10	n : 0.07	d : 0.05	] : 0.05	l : 0.05	= : 0.02	b : 0.02	
b : 0.46	c : 0.23	e : 0.10	d : 0.07	= : 0.05	f : 0.05	o : 0.02	
b : 0.43	c : 0.23	e : 0.10	d : 0.07	= : 0.05	f : 0.05	a : 0.02	] : 0.02	
3 : 0.17	2 : 0.17	c : 0.12	] : 0.12	4 : 0.12	e : 0.10	= : 0.05	f : 0.05	d : 0.02	a : 0.02	
2 : 0.23	3 : 0.17	e : 0.15	4 : 0.12	c : 0.05	= : 0.05	b : 0.05	f : 0.05	] : 0.05	d : 0.02	a : 0.02	
3 : 0.17	e : 0.15	4 : 0.15	c : 0.12	f : 0.10	= : 0.07	a : 0.07	2 : 0.05	b : 0.05	d : 0.02	
4 : 0.20	c : 0.15	e : 0.12	f : 0.12	] : 0.12	= : 0.07	d : 0.05	a : 0.05	i : 0.02	g : 0.02	b : 0.02	
d : 0.20	e : 0.15	c : 0.12	= : 0.07	f : 0.07	4 : 0.07	] : 0.07	b : 0.07	i : 0.02	3 : 0.02	g : 0.02	a : 0.02	2 : 0.02	
d : 0.20	e : 0.15	f : 0.10	g : 0.07	= : 0.07	] : 0.07	4 : 0.07	b : 0.07	2 : 0.05	c : 0.05	i : 0.02	3 : 0.02	
d : 0.25	f : 0.12	e : 0.10	g : 0.07	= : 0.07	] : 0.07	3 : 0.05	2 : 0.05	c : 0.05	4 : 0.05	i : 0.02	b : 0.02	: : 0.02	
d : 0.23	c : 0.20	f : 0.12	e : 0.12	g : 0.07	= : 0.07	i : 0.02	3 : 0.02	[ : 0.02	] : 0.02	2 : 0.02	: : 0.02	

#score	349.6434014113822
#seq	39
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_CDS_m1_run1.txt

#BEAR
C:eeeeeuuuuuuuuuuuueeeee	chr19:7707021-7707230(+)$1	209	46	70	21.8613
cceeeeeyyyyyyyyyyyyyyyye	chrX:55047471-55047697(-)$1	226	83	107	20.3705
cfffffftttttttttttffffff	chr4:83799846-83800076(-)$1	230	171	195	22.7352
hhhhhhhvvvvvvvvvvvvvhhhh	chr8:53574103-53574349(-)$1	246	44	68	21.8687
!bb[cccuuuuuuuuuuuuccc22	chr18:756460-756724(-)$1	264	16	40	22.7308
a[eeeeeuuuuuuuuuuuueeeee	chr17:8449789-8450044(-)$1	255	99	123	24.2749
hhhh[bbuuuuuuuuuuuubb]hh	chr19:6368559-6368814(+)$1	255	224	248	22.0040
ffffcccuuuuuuuuuuuuccc]f	chr5:10282213-10282472(-)$1	259	166	190	23.8711
hh[dddduuuuuuuuuuuuddddh	chr9:75784870-75785142(+)$1	272	23	47	22.5285
!!eeeeevvvvvvvvvvvvveeee	chr7:65617116-65617385(+)$1	269	217	241	24.6781
d[eeeeettttttttttteeeee]	chr2:174062651-174062896(+)$1	245	166	190	22.5980
=======wwwwwwwwwwwwww===	chr17:18219362-18219660(+)$1	298	251	275	22.6517
ccccccvvvvvvvvvvvvvccccc	chr22:44392136-44392462(+)$1	326	245	269	22.9679
gggggggvvvvvvvvvvvvvgggg	chr2:152131897-152132192(-)$1	295	202	226	24.4097
!!fffffftttttttttttfffff	chr1:8931849-8932051(-)$1	202	158	182	23.1620
cccddddwwwwwwwwwwwwwwddd	chr8:144892580-144892833(-)$1	253	91	115	21.7198
ggggggguuuuuuuuuuuuggggg	chr17:79804247-79804496(-)$1	249	140	164	24.1331
[ffffffvvvvvvvvvvvvvffff	chr6:13657363-13657608(-)$1	245	209	233	24.5954
c[eeeeewwwwwwwwwwwwwweee	chr14:102470891-102471120(+)$1	229	166	190	23.1845
$$$eeeeettttttttttteeeee	chr8:99719302-99719566(-)$1	264	13	37	22.0120
gggggggvvvvvvvvvvvvvgggg	chr3:195791163-195791368(-)$1	205	86	110	24.4097
=[eeeeevvvvvvvvvvvvveeee	chr9:124116776-124117004(-)$1	228	160	184	24.5971
eee[ddddtttttttttttdddde	chr1:93299050-93299295(+)$1	245	180	204	21.5906
eeeeeeevvvvvvvvvvvvveeee	chr14:24606427-24606681(+)$1	254	80	104	24.1873
[ccc[ccctttttttttttccc]c	chr12:98993631-98993882(+)$1	251	182	206	22.6731
!!fffffftttttttttttfffff	chr7:99694823-99695041(-)$1	218	29	53	23.1620
gggggggtttttttttttgggggg	chr1:93826072-93826330(+)$1	258	158	182	22.5167
eeee[bbyyyyyyyyyyyyyyyyb	chr1:115272916-115273143(-)$1	227	158	182	19.3611
fff!!bbvvvvvvvvvvvvvbb22	chr3:183898800-183899052(+)$1	252	190	214	22.5014
:eeeeevvvvvvvvvvvvveeeee	chr19:46350912-46351177(-)$1	265	108	132	22.5304
Cffffffuuuuuuuuuuuufffff	chr6:2953229-2953519(-)$1	290	88	112	23.0271
!ffffffwwwwwwwwwwwwwwfff	chr9:88924328-88924590(-)$1	262	51	75	23.1889
"""dddduuuuuuuuuuuudddd3	chr7:99697253-99697477(-)$1	224	48	72	22.7939
dfffffftttttttttttffffff	chr1:115251056-115251318(-)$1	262	65	89	22.5471
ffffffwwwwwwwwwwwwwwffff	chr1:212161139-212161446(-)$1	307	134	158	22.7079
!!fffffftttttttttttfffff	chr3:179293932-179294195(+)$1	263	106	130	23.1620
[ffffffwwwwwwwwwwwwwwfff	chrX:100646416-100646649(+)$1	233	199	223	23.1991
[ffffffvvvvvvvvvvvvvffff	chr3:139079822-139080036(-)$1	214	157	181	24.5954
hh[eeeeettttttttttteeeee	chr7:155099849-155100093(+)$1	244	34	58	22.5370
ggeeeeeuuuuuuuuuuuueeeee	chrX:11197385-11197672(-)$1	287	187	211	24.2448
eeeee[bbtttttttttttbbeee	chr18:19395541-19395811(+)$1	270	144	168	21.9789
ffffffwwwwwwwwwwwwwwffff	chr3:47908632-47908885(-)$1	253	26	50	22.7079
Iccc[bbuuuuuuuuuuuubb]cc	chr1:20980021-20980270(-)$1	249	15	39	21.6420
eeee[ccctttttttttttcccee	chr15:55474266-55474484(-)$1	218	118	142	22.7751
ggggggguuuuuuuuuuuuggggg	chr15:75219004-75219240(-)$1	236	125	149	24.1331
[ffffffwwwwwwwwwwwwwwfff	chrX:24080432-24080639(+)$1	207	5	29	23.1991
f!!dddduuuuuuuuuuuudddd]	chr1:154201041-154201248(+)$1	207	96	120	23.0056
f!!dddduuuuuuuuuuuudddd3	chr12:49522934-49523168(-)$1	234	30	54	22.9485
ggggggguuuuuuuuuuuuggggg	chr12:7054842-7055055(+)$1	213	185	209	24.1331
:fffffftttttttttttffffff	chr1:160293122-160293373(-)$1	251	95	119	21.7929
gggggggwwwwwwwwwwwwwwggg	chr20:39751827-39752043(+)$1	216	150	174	23.0200
gggggggvvvvvvvvvvvvvgggg	chr12:110770895-110771192(+)$1	297	162	186	24.4097
ffff[bbtttttttttttbb]fff	chr11:320644-320860(-)$1	216	143	167	21.9316
a[eeeeeuuuuuuuuuuuueeeee	chr20:44526543-44526805(+)$1	262	116	140	24.2749
f!!ddddwwwwwwwwwwwwwwddd	chr3:122811124-122811393(+)$1	269	123	147	21.8588

#otherMatches

#Seq PSSM
CUGCCCUAAACCCCACCCCAGGGC	chr19:7707021-7707230(+)$1	209	46	70	21.8613
GCUGGGCUGAUGCAUAUCCCUUUG	chrX:55047471-55047697(-)$1	226	83	107	20.3705
CCUUGGAUGUGAACAUUUUCCAGG	chr4:83799846-83800076(-)$1	230	171	195	22.7352
CCUUUGAAACAUUUUUUUUCUCAA	chr8:53574103-53574349(-)$1	246	44	68	21.8687
ACCAUGUCCGUCAUCUUCAGCAAA	chr18:756460-756724(-)$1	264	16	40	22.7308
GUGAUGGAGUUUACUCGGGCCAUC	chr17:8449789-8450044(-)$1	255	99	123	24.2749
GCCCUGCUCACCCCUUGUUGCUGG	chr19:6368559-6368814(+)$1	255	224	248	22.0040
AAGUUGGCAUCuuuucucuucgua	chr5:10282213-10282472(-)$1	259	166	190	23.8711
CUUCUAUAAGUAAAAAAAAAUAGA	chr9:75784870-75785142(+)$1	272	23	47	22.5285
ACCCAGCAUAGAAGAGCACAGCUG	chr7:65617116-65617385(+)$1	269	217	241	24.6781
GGCUUGUAGUGGAAAAAAACGAGG	chr2:174062651-174062896(+)$1	245	166	190	22.5980
GAGCUUUCAGCCGAAUUUUCCAGA	chr17:18219362-18219660(+)$1	298	251	275	22.6517
CCCGUCAAUAAAUGUUAAAGACAC	chr22:44392136-44392462(+)$1	326	245	269	22.9679
AGGGUGUAGAAGGUUAACAGACAC	chr2:152131897-152132192(-)$1	295	202	226	24.4097
UUGCCCAGUCCUGUCCUCUCUGGG	chr1:8931849-8932051(-)$1	202	158	182	23.1620
CGAGCUCAAGGUGAUGAAGAGGAG	chr8:144892580-144892833(-)$1	253	91	115	21.7198
GGCAGAGAGGAUCACAGAGUUCUG	chr17:79804247-79804496(-)$1	249	140	164	24.1331
CUGUUGUGUUAAUCUUAUCAACAA	chr6:13657363-13657608(-)$1	245	209	233	24.5954
AUUUUUGCAUACCUCAUUUCUUAA	chr14:102470891-102471120(+)$1	229	166	190	23.1845
AUAUUUCUUUCCAGUUAAUAGAAG	chr8:99719302-99719566(-)$1	264	13	37	22.0120
GGGGCCCAGAGAGAUGCAUGGGGC	chr3:195791163-195791368(-)$1	205	86	110	24.4097
ACUAAAGUUCuuuuuauuuuuuuu	chr9:124116776-124117004(-)$1	228	160	184	24.5971
UAGACAGUCCCCUUUUUUUAUUGC	chr1:93299050-93299295(+)$1	245	180	204	21.5906
CCCUCCUCCCACCCUACACCAGGA	chr14:24606427-24606681(+)$1	254	80	104	24.1873
UGAAGCACUGUACAAGUUUGUGGU	chr12:98993631-98993882(+)$1	251	182	206	22.6731
UCCAGGCAACAUCAACAUCUGUCU	chr7:99694823-99695041(-)$1	218	29	53	23.1620
UGUUUUUCCCUGCACAACAAAAAC	chr1:93826072-93826330(+)$1	258	158	182	22.5167
CGGUUUCAUUUCAUUCCCAUUCAG	chr1:115272916-115273143(-)$1	227	158	182	19.3611
CACAGCUGAUGAAACAAGCAAGAG	chr3:183898800-183899052(+)$1	252	190	214	22.5014
GCCAGGAGCAUGAUAUCAGCCUGG	chr19:46350912-46351177(-)$1	265	108	132	22.5304
CUUCCGCUCAGGUAAAAUUGCGGA	chr6:2953229-2953519(-)$1	290	88	112	23.0271
UAGCAGAAAACAGACCUUUCCUUU	chr9:88924328-88924590(-)$1	262	51	75	23.1889
GGUGAGCAAAGUGAAUGUGGCUCU	chr7:99697253-99697477(-)$1	224	48	72	22.7939
CACUGGUAAGAGAAAUACGCCAGU	chr1:115251056-115251318(-)$1	262	65	89	22.5471
GACAGCUUAAAACUAGGGAUGUUG	chr1:212161139-212161446(-)$1	307	134	158	22.7079
GACAGUGGAGCCACUCAUACCACU	chr3:179293932-179294195(+)$1	263	106	130	23.1620
UCCGGGUCUCUCUCCCUCCACGCC	chrX:100646416-100646649(+)$1	233	199	223	23.1991
GGUUUUUGGAGAGGGAAGUGAAGA	chr3:139079822-139080036(-)$1	214	157	181	24.5954
UAAUUAAAAUAUUUAUACAUUUAG	chr7:155099849-155100093(+)$1	244	34	58	22.5370
CUGAGGGACAUGCCAGACCCCCUU	chrX:11197385-11197672(-)$1	287	187	211	24.2448
GACAGACACCACUUCAUAUUGCUG	chr18:19395541-19395811(+)$1	270	144	168	21.9789
GUGUUGUUUUUUCUAUUUUCUAAC	chr3:47908632-47908885(-)$1	253	26	50	22.7079
AGGCAACUAUGAACUAGCUGUGGC	chr1:20980021-20980270(-)$1	249	15	39	21.6420
UGGAAGAUGCUCCUUAAAAAUCUC	chr15:55474266-55474484(-)$1	218	118	142	22.7751
GUUGUUAAGGUCAGUGAAAUAAUA	chr15:75219004-75219240(-)$1	236	125	149	24.1331
cccauaauuugcuuugucucuuua	chrX:24080432-24080639(+)$1	207	5	29	23.1991
GCAUGACUGCAAUGGAGAUGUCAA	chr1:154201041-154201248(+)$1	207	96	120	23.0056
CACCCUGAGCAGCUCAUCACAGGC	chr12:49522934-49523168(-)$1	234	30	54	22.9485
GCCCAUGACCCUGCCACCCCAUGG	chr12:7054842-7055055(+)$1	213	185	209	24.1331
AUGCCCCUUAUUGUAUCUGGGGCA	chr1:160293122-160293373(-)$1	251	95	119	21.7929
GGUUUGGGAAAGAUGGAUAAACUG	chr20:39751827-39752043(+)$1	216	150	174	23.0200
UUGUAAUGACUCUGCUUUGGAUUA	chr12:110770895-110771192(+)$1	297	162	186	24.4097
GGGGCGCCCCACAACCCUGCUCCC	chr11:320644-320860(-)$1	216	143	167	21.9316
GGCCCUGGUUAGUGAAGUACGGGG	chr20:44526543-44526805(+)$1	262	116	140	24.2749
GGCGGUGAAAGGACAAGGGACCAU	chr3:122811124-122811393(+)$1	269	123	147	21.8588

#DB
(.(((((............)))))	chr19:7707021-7707230(+)$1	1	46	70	21.8613
))(((((................)	chrX:55047471-55047697(-)$1	1	83	107	20.3705
)((((((...........))))))	chr4:83799846-83800076(-)$1	1	171	195	22.7352
(((((((.............))))	chr8:53574103-53574349(-)$1	1	44	68	21.8687
.((.(((............)))..	chr18:756460-756724(-)$1	1	16	40	22.7308
(.(((((............)))))	chr17:8449789-8450044(-)$1	1	99	123	24.2749
((((.((............)).))	chr19:6368559-6368814(+)$1	1	224	248	22.0040
(((((((............))).)	chr5:10282213-10282472(-)$1	1	166	190	23.8711
((.((((............)))))	chr9:75784870-75785142(+)$1	1	23	47	22.5285
..(((((.............))))	chr7:65617116-65617385(+)$1	1	217	241	24.6781
(.(((((...........))))).	chr2:174062651-174062896(+)$1	1	166	190	22.5980
(((((((..............)))	chr17:18219362-18219660(+)$1	1	251	275	22.6517
)))(((.............)))((	chr22:44392136-44392462(+)$1	1	245	269	22.9679
(((((((.............))))	chr2:152131897-152132192(-)$1	1	202	226	24.4097
..((((((...........)))))	chr1:8931849-8932051(-)$1	1	158	182	23.1620
(((((((..............)))	chr8:144892580-144892833(-)$1	1	91	115	21.7198
(((((((............)))))	chr17:79804247-79804496(-)$1	1	140	164	24.1331
.((((((.............))))	chr6:13657363-13657608(-)$1	1	209	233	24.5954
(.(((((..............)))	chr14:102470891-102471120(+)$1	1	166	190	23.1845
...(((((...........)))))	chr8:99719302-99719566(-)$1	1	13	37	22.0120
(((((((.............))))	chr3:195791163-195791368(-)$1	1	86	110	24.4097
(.(((((.............))))	chr9:124116776-124117004(-)$1	1	160	184	24.5971
(((.((((...........)))))	chr1:93299050-93299295(+)$1	1	180	204	21.5906
))(((((.............))))	chr14:24606427-24606681(+)$1	1	80	104	24.1873
.(((.(((...........))).)	chr12:98993631-98993882(+)$1	1	182	206	22.6731
..((((((...........)))))	chr7:99694823-99695041(-)$1	1	29	53	23.1620
(((((((...........))))))	chr1:93826072-93826330(+)$1	1	158	182	22.5167
((((.((................)	chr1:115272916-115273143(-)$1	1	158	182	19.3611
(((..((.............))..	chr3:183898800-183899052(+)$1	1	190	214	22.5014
.(((((.............)))))	chr19:46350912-46351177(-)$1	1	108	132	22.5304
(((((((............)))))	chr6:2953229-2953519(-)$1	1	88	112	23.0271
.((((((..............)))	chr9:88924328-88924590(-)$1	1	51	75	23.1889
...((((............)))).	chr7:99697253-99697477(-)$1	1	48	72	22.7939
)((((((...........))))))	chr1:115251056-115251318(-)$1	1	65	89	22.5471
((((((..............))))	chr1:212161139-212161446(-)$1	1	134	158	22.7079
..((((((...........)))))	chr3:179293932-179294195(+)$1	1	106	130	23.1620
.((((((..............)))	chrX:100646416-100646649(+)$1	1	199	223	23.1991
.((((((.............))))	chr3:139079822-139080036(-)$1	1	157	181	24.5954
((.(((((...........)))))	chr7:155099849-155100093(+)$1	1	34	58	22.5370
(((((((............)))))	chrX:11197385-11197672(-)$1	1	187	211	24.2448
(((((.((...........)))))	chr18:19395541-19395811(+)$1	1	144	168	21.9789
((((((..............))))	chr3:47908632-47908885(-)$1	1	26	50	22.7079
((((.((............)).))	chr1:20980021-20980270(-)$1	1	15	39	21.6420
((((.(((...........)))))	chr15:55474266-55474484(-)$1	1	118	142	22.7751
(((((((............)))))	chr15:75219004-75219240(-)$1	1	125	149	24.1331
.((((((..............)))	chrX:24080432-24080639(+)$1	1	5	29	23.1991
(..((((............)))).	chr1:154201041-154201248(+)$1	1	96	120	23.0056
(..((((............)))).	chr12:49522934-49523168(-)$1	1	30	54	22.9485
(((((((............)))))	chr12:7054842-7055055(+)$1	1	185	209	24.1331
.((((((...........))))))	chr1:160293122-160293373(-)$1	1	95	119	21.7929
(((((((..............)))	chr20:39751827-39752043(+)$1	1	150	174	23.0200
(((((((.............))))	chr12:110770895-110771192(+)$1	1	162	186	24.4097
((((.((...........)).)))	chr11:320644-320860(-)$1	1	143	167	21.9316
(.(((((............)))))	chr20:44526543-44526805(+)$1	1	116	140	24.2749
(..((((..............)))	chr3:122811124-122811393(+)$1	1	123	147	21.8588

#PSSM
g : 0.16	f : 0.14	! : 0.10	c : 0.09	[ : 0.09	e : 0.09	h : 0.07	C : 0.03	a : 0.03	d : 0.03	= : 0.03	: : 0.03	$ : 0.01	" : 0.01	I : 0.01	
f : 0.25	g : 0.16	! : 0.12	e : 0.10	c : 0.09	[ : 0.09	h : 0.07	: : 0.01	b : 0.01	= : 0.01	$ : 0.01	" : 0.01	
f : 0.30	e : 0.27	g : 0.14	c : 0.07	! : 0.05	h : 0.03	[ : 0.03	b : 0.01	= : 0.01	$ : 0.01	" : 0.01	
e : 0.29	f : 0.29	g : 0.14	d : 0.10	c : 0.05	h : 0.03	[ : 0.03	= : 0.01	! : 0.01	
e : 0.25	f : 0.25	g : 0.14	d : 0.12	[ : 0.10	c : 0.05	h : 0.01	= : 0.01	! : 0.01	
f : 0.25	e : 0.23	g : 0.14	d : 0.12	c : 0.09	b : 0.09	h : 0.01	= : 0.01	[ : 0.01	
e : 0.21	f : 0.21	g : 0.14	d : 0.12	b : 0.10	c : 0.07	v : 0.03	w : 0.03	h : 0.01	= : 0.01	
u : 0.29	v : 0.21	w : 0.18	t : 0.10	f : 0.05	y : 0.03	e : 0.03	c : 0.03	d : 0.01	b : 0.01	
u : 0.29	t : 0.27	v : 0.21	w : 0.18	y : 0.03	
u : 0.29	t : 0.27	v : 0.21	w : 0.18	y : 0.03	
u : 0.29	t : 0.27	v : 0.21	w : 0.18	y : 0.03	
u : 0.29	t : 0.27	v : 0.21	w : 0.18	y : 0.03	
u : 0.29	t : 0.27	v : 0.21	w : 0.18	y : 0.03	
u : 0.29	t : 0.27	v : 0.21	w : 0.18	y : 0.03	
u : 0.29	t : 0.27	v : 0.21	w : 0.18	y : 0.03	
u : 0.29	t : 0.27	v : 0.21	w : 0.18	y : 0.03	
u : 0.29	t : 0.27	v : 0.21	w : 0.18	y : 0.03	
u : 0.29	t : 0.27	v : 0.21	w : 0.18	y : 0.03	
u : 0.29	v : 0.21	w : 0.18	t : 0.16	f : 0.05	y : 0.03	e : 0.01	g : 0.01	b : 0.01	
v : 0.18	w : 0.18	e : 0.14	f : 0.12	c : 0.09	d : 0.09	b : 0.07	g : 0.07	y : 0.03	
e : 0.20	f : 0.20	w : 0.14	g : 0.12	c : 0.09	d : 0.09	b : 0.07	y : 0.03	h : 0.01	] : 0.01	
f : 0.27	e : 0.23	g : 0.14	d : 0.12	c : 0.09	y : 0.03	] : 0.03	h : 0.01	= : 0.01	b : 0.01	
f : 0.27	e : 0.25	g : 0.14	d : 0.12	y : 0.03	h : 0.03	2 : 0.03	] : 0.03	c : 0.03	= : 0.01	
f : 0.29	e : 0.27	g : 0.14	h : 0.05	c : 0.05	2 : 0.03	] : 0.03	d : 0.03	3 : 0.03	= : 0.01	b : 0.01	

#score	1261.7037289153436
#seq	55
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_CDS_m1_run2.txt

#BEAR
b####cccccc!!cccmmmmccc333ccc]ccc66	chrX:153063487-153063691(+)$1	204	64	99	11.2409
ee::bb==========oooooo==========]bb	chr4:83778053-83778315(-)$1	262	106	141	12.7651
cc[eeeee"""ddddoooooodddd333eeeee]c	chr11:63521033-63521251(+)$1	218	105	140	15.5989
[ccc[dddd[ddddoooooodddd]dddd]ccc]a	chr20:30142492-30142722(+)$1	230	56	91	13.5906
eeeeeccc[eeeeeooooooeeeee]ccc]eeeee	chr19:581485-581691(+)$1	206	143	178	12.6968
BBccc!!gggggggbboooooobb]ggggggg]cc	chr20:43129720-43130040(-)$1	320	232	267	11.8968
eeeee[bb!!a[cccooooooccc]a22bbeeeee	chr11:57155128-57155347(-)$1	219	175	210	14.7890
dddd[bb[ffffffooooooffffff4444bb333	chr11:315003-315233(+)$1	230	125	160	11.3237
ccc[ggggggg!!cccnnnnnccc]gggggggccc	chr19:40485640-40485921(+)$1	281	152	187	12.7982
ddd!!dddd[a[ccc[aooooooa]ccca]dddd3	chr3:33055469-33055736(-)$1	267	44	79	13.5226
ddd[dddd####cccooooooccc22dddd]dddd	chr4:144797800-144798075(-)$1	275	155	190	14.3447
dccc[==========oooooo==========ccc:	chr7:100859342-100859563(-)$1	221	41	76	15.7987
ggggggccc[ccc[bboooooobb]cccccc22gg	chr12:50155385-50155608(+)$1	223	63	98	13.5658
eeee!!bb!!a[bboooooobb]a]bb]eeeee44	chr19:11552032-11552255(+)$1	223	100	135	13.0166
:ffffffbb"""cccooooooccc333bb]fffff	chr16:30080118-30080369(+)$1	251	202	237	13.9354
ggggggg####ccc[ccclllccc]ccc333gggg	chr19:10394109-10394364(+)$1	255	85	120	12.4448
=====[accc[ddddooooooddddccc333a]==	chr1:225597892-225598130(-)$1	238	7	42	15.2570
$$hhhhhhhh!!cccooooooccc]hhhhhhhhff	chr1:155112390-155112693(-)$1	303	112	147	12.8446
ggg!!dddd"""cccmmmmcccdddd4444ggggg	chr17:33932707-33932933(+)$1	226	28	63	11.3194
cc[eeeee"""ddddoooooodddd333eeeee]c	chr11:63521051-63521276(+)$1	225	87	122	15.5989
cc[eeeee"""ddddoooooodddd333eeeee]c	chr11:63521076-63521280(+)$1	204	62	97	15.5989
dddd!!iiiiiiiiiooooooiiiiiiiiidddd2	chr1:1158548-1158809(-)$1	261	48	83	14.9745
iiiiiii"""eeeeeooooooeeeee4444iiiii	chr19:45419385-45419655(+)$1	270	161	196	14.8684
hhh[ggggggg"""aooooooa333ggggggghhh	chrX:47445869-47446116(+)$1	247	6	41	14.6633
eeeegggggggddddoooooodddd22ggggggg6	chrX:153061888-153062107(+)$1	219	56	91	13.9325
ddggggggg"""cccooooooccc]gggggggfff	chr11:75277581-75277878(+)$1	297	196	231	16.2262
bb[===========nnnnn===========bbccc	chr11:118968564-118968818(-)$1	254	57	92	11.7842
ggggbbccc[a[cccooooooccc]accc]bb]gg	chr22:19711600-19711946(+)$1	346	140	175	15.9518
ffff!!ccc"""ddddllldddd333ccc22ffff	chr11:88027261-88027562(-)$1	301	150	185	11.6583
!a!!bb$$$$$ddddoooooodddd4444bb333a	chrX:153657314-153657529(+)$1	215	129	164	13.8552
[a$$$$$dddd!!bboooooobb22dddd4444a]	chr15:64452202-64452433(-)$1	231	148	183	12.3300
c"""ccc[ccc!!cccnnnnnccc22ccc]ccc33	chr12:96411233-96411460(-)$1	227	92	127	13.0723
fffff==========oooooo==========22ff	chr19:13050190-13050404(+)$1	214	168	203	15.5705
=========[a[cccmmmmccc]a]==========	chrX:153663519-153663790(+)$1	271	41	76	12.9250
eeeee[eeeee!!bboooooobb22eeeee]eeee	chr6:108234492-108234733(-)$1	241	180	215	12.8577
ee!!===========lll===========]eeeee	chr8:42256207-42256482(+)$1	275	201	236	13.6187
cc[iiiiiiiii[bboooooobb]iiiiiiiiicc	chr8:11706553-11706774(-)$1	221	23	58	15.4652
ccccbb####ddddoooooodddd333bb]ccc]c	chr9:90344479-90344747(+)$1	268	30	65	14.3109
d[cccccc[dddd[bboooooobb]dddd]ccc22	chr2:55214536-55214776(-)$1	240	27	62	12.6226
eeeeccc[iiiiiiiiillliiiiiiiii]ccc]e	chr1:12024601-12024822(+)$1	221	98	133	12.4196
ee[a####ccc[ddddllldddd22ccc4444a]e	chr2:20234640-20234866(-)$1	226	64	99	11.3214
hh####gggggggcccnnnnnccc]ggggggg22h	chr10:126097209-126097420(-)$1	211	136	171	11.7009
ccc[eeeee[bb[aooooooa]bbeeeee]ccc99	chr2:162226515-162226751(+)$1	236	108	143	11.5018
b!!eeeee[a!!cccooooooccc22aeeeee22b	chr10:102114173-102114442(+)$1	269	110	145	15.0389
bhhhhhhhh"""cccooooooccchhhhhhhh444	chr1:116943669-116943958(+)$1	289	66	101	13.6830
cc[bb!!ccc[bbbboooooobb]bb]cccbb]cc	chr17:57758580-57758856(+)$1	276	101	136	12.4545
c[a[bbeeeee[ddddaooooooa]ddddeeeee]	chr2:10928994-10929207(-)$1	213	131	166	11.6835
fff[dddd!!eeeeeooooooeeeee4444dddd]	chr18:21124305-21124567(-)$1	262	154	189	13.3005
bbeeeee[ccc[cccooooooccc22ccc]eeeee	chr10:102114128-102114339(+)$1	211	160	195	15.1366
fffbb[ccc[dddd[aooooooadddd]ccc333b	chr2:65245173-65245428(+)$1	255	121	156	12.9627
c!!ccc[bb[ddddoooooodddd]bb333ccc]c	chr5:177020549-177020768(+)$1	219	79	114	14.0891
ccdddd==========lll==========4444dd	chr13:37539698-37539958(-)$1	260	138	173	12.8151
"eeeee[bb"""cccooooooccc333bb]eeeee	chr1:25679272-25679481(+)$1	209	165	200	15.7493
hhhhhhhh!!eeeeeooooooeeeee333hhhhhh	chr12:50156555-50156779(+)$1	224	83	118	12.5458
dddd"""iiiiiiiiinnnnniiiiiiiiidddd]	chr14:74947304-74947582(-)$1	278	18	53	11.5937

#otherMatches

#Seq PSSM
CAUCAUCCCGCCUCUGUUUACAGUCAGCGUGGACC	chrX:153063487-153063691(+)$1	204	64	99	11.2409
AACCGCAUGGCCGAUGCCAUUAUAUUGGCCAUAGC	chr4:83778053-83778315(-)$1	262	106	141	12.7651
CUGCUCAUUUUCAGUGUCCCGAUUGUCUAUGAGAA	chr11:63521033-63521251(+)$1	218	105	140	15.5989
UGGUGUUUCCCCAGGAUCUGCUGGAGAAAGGCCUC	chr20:30142492-30142722(+)$1	230	56	91	13.5906
CGGGGUGGCCCAGGGCCACUCCUGGUCCGUCCCUG	chr19:581485-581691(+)$1	206	143	178	12.6968
GAGAAAGAGGGAGUGCAGUAUAGCUACUCCUUAUU	chr20:43129720-43130040(-)$1	320	232	267	11.8968
CAAGGAGGAGAUGCUACAAAGAGCCUGACCCUUUG	chr11:57155128-57155347(-)$1	219	175	210	14.7890
UGCAACCUUUGCACUCCACUGUGCAAUGCUGGCCC	chr11:315003-315233(+)$1	230	125	160	11.3237
GGGAUGUGUUCCGCCUGGCCAAGGAGAAUGCACCU	chr19:40485640-40485921(+)$1	281	152	187	12.7982
UGACAGUGGCCACCAUGAUGAAGCCUGGGCCCACA	chr3:33055469-33055736(-)$1	267	44	79	13.5226
CUGUAUUCGAUGACUGAUAAAGGUGAGAAUUCAGU	chr4:144797800-144798075(-)$1	275	155	190	14.3447
AGCUUCUGCUGGCCCGAGUGGGGGCUGGCGGAGCA	chr7:100859342-100859563(-)$1	221	41	76	15.7987
UCUGAAGUACAGAUCCUAAUCUGGUUCUUGCCUUU	chr12:50155385-50155608(+)$1	223	63	98	13.5658
CCUUAUUGAGGACUGGAAGAAGGCACGGGAGGAGA	chr19:11552032-11552255(+)$1	223	100	135	13.0166
AGGCAACCUCCUACCUCAUUUGGUUCCAGUGUUGU	chr16:30080118-30080369(+)$1	251	202	237	13.9354
UGGCAGCCAGUGGGCAAGAACCUUACCCUACGCUG	chr19:10394109-10394364(+)$1	255	85	120	12.4448
UUCAGGUGGUUAUUAACUUGGUGAUGCUUUUGGCU	chr1:225597892-225598130(-)$1	238	7	42	15.2570
CUGGUGUCCGCCGGCUGCUAUGCCCUGGGCACUGU	chr1:155112390-155112693(-)$1	303	112	147	12.8446
AGACGUAGUGAACUGUAUGCAGACUGACAAUCUGG	chr17:33932707-33932933(+)$1	226	28	63	11.3194
CUGCUCAUUUUCAGUGUCCCGAUUGUCUAUGAGAA	chr11:63521051-63521276(+)$1	225	87	122	15.5989
CUGCUCAUUUUCAGUGUCCCGAUUGUCUAUGAGAA	chr11:63521076-63521280(+)$1	204	62	97	15.5989
GACAGGUGUGAUCUGCUCUUCCAGGUCACGUGUCU	chr1:1158548-1158809(-)$1	261	48	83	14.9745
CCGCAUCAAACAGAGUGAACUUUCUGCCAAGAUGC	chr19:45419385-45419655(+)$1	270	161	196	14.8684
AGGCAGGGAGAAGCCCUCAGAGAUGUUUCCCUCCU	chrX:47445869-47446116(+)$1	247	6	41	14.6633
GUCAUUUCCACUGAGACCGUCUUCAUUGUGGAGAU	chrX:153061888-153062107(+)$1	219	56	91	13.9325
GAAGCUGGGCAGCCGACUGUACGGACCCAGCUCAG	chr11:75277581-75277878(+)$1	297	196	231	16.2262
CCACACAGGUACCCAUCACGGGUGUUUGUGGGAGA	chr11:118968564-118968818(-)$1	254	57	92	11.7842
CGGCCGCCUGCUGCCCUAUCUGGCCGAGGACGAGC	chr22:19711600-19711946(+)$1	346	140	175	15.9518
AGGGGAUCUACCACCACACUGGUCUAAGAGACCCU	chr11:88027261-88027562(-)$1	301	150	185	11.6583
ACUUGCAGCUCUCUACCUACUUAGAUCCCGCCCUG	chrX:153657314-153657529(+)$1	215	129	164	13.8552
GGGCCAAGGAGUAUGUCAGUGUAGCCUCCACAGUG	chr15:64452202-64452433(-)$1	231	148	183	12.3300
UUUUUUGUAGGCAGGCGACAAGUCACUCUCCAAUG	chr12:96411233-96411460(-)$1	227	92	127	13.0723
ACUGUGGGGGCGGCUAUGUGAAGCUGUUUCCUAAU	chr19:13050190-13050404(+)$1	214	168	203	15.5705
GUGGGCUGGUGUGGCCCCAGCCUCCCCAGCUCACC	chrX:153663519-153663790(+)$1	271	41	76	12.9250
UUUUAAAAUAUUGGCGAUAUGGUAUAUAUUAUAAA	chr6:108234492-108234733(-)$1	241	180	215	12.8577
AUAGGUUCAAUUUAUCUUGUAGAUUGAAUGAUGAA	chr8:42256207-42256482(+)$1	275	201	236	13.6187
UGUGGCCCUUUGAGGGGACUGCUGCAGAGGGCCCA	chr8:11706553-11706774(-)$1	221	23	58	15.4652
CCAAGUAUUCUGUUGCUAAUGACACCGGCUUUGUG	chr9:90344479-90344747(+)$1	268	30	65	14.3109
AUUCAGCAUUGUGAGCGUAACAGCCUACAUUGCCU	chr2:55214536-55214776(-)$1	240	27	62	12.6226
GUGGUGUCUGGAAUGUGCCCUAUAUUUCAAACAUC	chr1:12024601-12024822(+)$1	221	98	133	12.4196
GACCUCCUGGCCUUGGACUCCAGCUGCCUCCUGUU	chr2:20234640-20234866(-)$1	226	64	99	11.3214
AUACCCUCAAAAAUAAUCUUUUUAUUUUUUGAUAG	chr10:126097209-126097420(-)$1	211	136	171	11.7009
AGUGUGGAGGCAGUUGAUCCAGUGUUCCAAGCUAA	chr2:162226515-162226751(+)$1	236	108	143	11.5018
ACGUGGGUUGGCUGCUUGUGCGCAAACACCCAGCU	chr10:102114173-102114442(+)$1	269	110	145	15.0389
GUCUUCUGCAUUUCAGACCUAUGAGCAGAGGAAAA	chr1:116943669-116943958(+)$1	289	66	101	13.6830
CUGCAAUUAAGGCUGACCGUACACGUGUUAUGGAG	chr17:57758580-57758856(+)$1	276	101	136	12.4545
GUGAGGAGCACCAGCUCUGUGUUGUGGCUGUGCUG	chr2:10928994-10929207(-)$1	213	131	166	11.6835
CAGCUACAUUGGGUUGCCCUUGACCCUCAUUGUGA	chr18:21124305-21124567(-)$1	262	154	189	13.3005
GGUUGGCUGCUUGUGCGCAAACACCCAGCUGUCAA	chr10:102114128-102114339(+)$1	211	160	195	15.1366
CACCGUGAACAUGGACGGAGCAGCCAUCUUCCAGU	chr2:65245173-65245428(+)$1	255	121	156	12.9627
GAAGCUUGUUACCUUCCUCCAGGUCAUCCUGGCCC	chr5:177020549-177020768(+)$1	219	79	114	14.0891
UGGUGUGGUUCCUUUGUGUCAAAGGAAUCAGGGAC	chr13:37539698-37539958(-)$1	260	138	173	12.8151
AUUCUUUUUGGAGGUUAUGUUGCUAAAGGUAAGAG	chr1:25679272-25679481(+)$1	209	165	200	15.7493
UUUUUCUCCAUUUCUAGGAUAAGAAGAAAGAGAAG	chr12:50156555-50156779(+)$1	224	83	118	12.5458
UCUAGGAUUCAUAGUUAAACCAAUUAUGGAUAGAA	chr14:74947304-74947582(-)$1	278	18	53	11.5937

#DB
(....((((((..(((....)))...))).)))..	chrX:153063487-153063691(+)$1	1	64	99	11.2409
))..((((((((((((......)))))))))).))	chr4:83778053-83778315(-)$1	1	106	141	12.7651
((.(((((...((((......))))...))))).)	chr11:63521033-63521251(+)$1	1	105	140	15.5989
.(((.((((.((((......)))).)))).))).)	chr20:30142492-30142722(+)$1	1	56	91	13.5906
((((((((.(((((......))))).))).)))))	chr19:581485-581691(+)$1	1	143	178	12.6968
))(((..(((((((((......)).))))))).))	chr20:43129720-43130040(-)$1	1	232	267	11.8968
(((((.((..(.(((......))).)..)))))))	chr11:57155128-57155347(-)$1	1	175	210	14.7890
((((.((.((((((......))))))....))...	chr11:315003-315233(+)$1	1	125	160	11.3237
(((.(((((((..(((.....))).))))))))))	chr19:40485640-40485921(+)$1	1	152	187	12.7982
(((..((((.(.(((.(......).)))).)))).	chr3:33055469-33055736(-)$1	1	44	79	13.5226
(((.((((....(((......)))..)))).))))	chr4:144797800-144798075(-)$1	1	155	190	14.3447
)(((.((((((((((......))))))))))))).	chr7:100859342-100859563(-)$1	1	41	76	15.7987
(((((((((.(((.((......)).))))))..))	chr12:50155385-50155608(+)$1	1	63	98	13.5658
((((..((..(.((......)).).)).)))))..	chr19:11552032-11552255(+)$1	1	100	135	13.0166
.((((((((...(((......)))...)).)))))	chr16:30080118-30080369(+)$1	1	202	237	13.9354
(((((((....(((.(((...))).)))...))))	chr19:10394109-10394364(+)$1	1	85	120	12.4448
(((((.((((.((((......)))))))...).))	chr1:225597892-225598130(-)$1	1	7	42	15.2570
..((((((((..(((......))).))))))))))	chr1:155112390-155112693(-)$1	1	112	147	12.8446
(((..((((...(((....)))))))....)))))	chr17:33932707-33932933(+)$1	1	28	63	11.3194
((.(((((...((((......))))...))))).)	chr11:63521051-63521276(+)$1	1	87	122	15.5989
((.(((((...((((......))))...))))).)	chr11:63521076-63521280(+)$1	1	62	97	15.5989
((((..(((((((((......))))))))))))).	chr1:1158548-1158809(-)$1	1	48	83	14.9745
(((((((...(((((......)))))....)))))	chr19:45419385-45419655(+)$1	1	161	196	14.8684
(((.(((((((...(......)...))))))))))	chrX:47445869-47446116(+)$1	1	6	41	14.6633
(((((((((((((((......))))..))))))).	chrX:153061888-153062107(+)$1	1	56	91	13.9325
))(((((((...(((......))).)))))))(((	chr11:75277581-75277878(+)$1	1	196	231	16.2262
((.(((((((((((.....)))))))))))))(((	chr11:118968564-118968818(-)$1	1	57	92	11.7842
(((((((((.(.(((......))).)))).)).))	chr22:19711600-19711946(+)$1	1	140	175	15.9518
((((..(((...((((...))))...)))..))))	chr11:88027261-88027562(-)$1	1	150	185	11.6583
.(..((.....((((......))))....))...)	chrX:153657314-153657529(+)$1	1	129	164	13.8552
.(.....((((..((......))..))))....).	chr15:64452202-64452433(-)$1	1	148	183	12.3300
(...(((.(((..(((.....)))..))).)))..	chr12:96411233-96411460(-)$1	1	92	127	13.0723
(((((((((((((((......))))))))))..))	chr19:13050190-13050404(+)$1	1	168	203	15.5705
(((((((((.(.(((....))).).))))))))))	chrX:153663519-153663790(+)$1	1	41	76	12.9250
(((((.(((((..((......))..))))).))))	chr6:108234492-108234733(-)$1	1	180	215	12.8577
((..(((((((((((...))))))))))).)))))	chr8:42256207-42256482(+)$1	1	201	236	13.6187
((.(((((((((.((......)).)))))))))))	chr8:11706553-11706774(-)$1	1	23	58	15.4652
((((((....((((......))))...)).))).)	chr9:90344479-90344747(+)$1	1	30	65	14.3109
(.((((((.((((.((......)).)))).)))..	chr2:55214536-55214776(-)$1	1	27	62	12.6226
(((((((.(((((((((...))))))))).))).)	chr1:12024601-12024822(+)$1	1	98	133	12.4196
((.(....(((.((((...))))..)))....).)	chr2:20234640-20234866(-)$1	1	64	99	11.3214
((....((((((((((.....))).)))))))..)	chr10:126097209-126097420(-)$1	1	136	171	11.7009
(((.(((((.((.(......).))))))).)))..	chr2:162226515-162226751(+)$1	1	108	143	11.5018
(..(((((.(..(((......)))..))))))..)	chr10:102114173-102114442(+)$1	1	110	145	15.0389
(((((((((...(((......)))))))))))...	chr1:116943669-116943958(+)$1	1	66	101	13.6830
((.((..(((.((((......)).)).))))).))	chr17:57758580-57758856(+)$1	1	101	136	12.4545
(.(.(((((((.(((((......).))))))))).	chr2:10928994-10929207(-)$1	1	131	166	11.6835
(((.((((..(((((......)))))....)))).	chr18:21124305-21124567(-)$1	1	154	189	13.3005
))(((((.(((.(((......)))..))).)))))	chr10:102114128-102114339(+)$1	1	160	195	15.1366
(((((.(((.((((.(......))))).)))...)	chr2:65245173-65245428(+)$1	1	121	156	12.9627
(..(((.((.((((......)))).))...))).)	chr5:177020549-177020768(+)$1	1	79	114	14.0891
((((((((((((((((...))))))))))....))	chr13:37539698-37539958(-)$1	1	138	173	12.8151
.(((((.((...(((......)))...)).)))))	chr1:25679272-25679481(+)$1	1	165	200	15.7493
((((((((..(((((......)))))...))))))	chr12:50156555-50156779(+)$1	1	83	118	12.5458
((((...(((((((((.....))))))))))))).	chr14:74947304-74947582(-)$1	1	18	53	11.5937

#PSSM
c : 0.21	e : 0.16	d : 0.14	b : 0.09	g : 0.07	f : 0.07	h : 0.05	[ : 0.03	= : 0.03	B : 0.01	: : 0.01	$ : 0.01	i : 0.01	! : 0.01	" : 0.01	
c : 0.20	e : 0.18	d : 0.10	f : 0.09	g : 0.07	h : 0.07	= : 0.03	b : 0.03	a : 0.03	[ : 0.03	! : 0.03	# : 0.01	B : 0.01	$ : 0.01	i : 0.01	" : 0.01	
e : 0.14	[ : 0.12	c : 0.12	d : 0.10	g : 0.09	f : 0.09	h : 0.07	! : 0.07	# : 0.03	= : 0.03	: : 0.01	i : 0.01	$ : 0.01	" : 0.01	a : 0.01	
e : 0.21	c : 0.10	[ : 0.10	d : 0.07	! : 0.07	g : 0.07	f : 0.05	= : 0.05	h : 0.05	# : 0.03	i : 0.03	b : 0.03	: : 0.01	$ : 0.01	" : 0.01	a : 0.01	
e : 0.18	b : 0.12	g : 0.10	c : 0.09	! : 0.09	= : 0.07	# : 0.05	[ : 0.05	d : 0.05	h : 0.05	f : 0.03	i : 0.03	$ : 0.01	" : 0.01	
e : 0.12	c : 0.10	b : 0.10	d : 0.10	g : 0.10	! : 0.09	= : 0.09	[ : 0.07	h : 0.05	i : 0.03	# : 0.03	f : 0.01	$ : 0.01	" : 0.01	
c : 0.16	e : 0.14	= : 0.12	g : 0.10	d : 0.09	b : 0.05	h : 0.05	i : 0.05	! : 0.03	$ : 0.03	# : 0.03	[ : 0.03	f : 0.01	a : 0.01	" : 0.01	
c : 0.16	= : 0.12	e : 0.12	d : 0.10	g : 0.10	b : 0.09	[ : 0.07	# : 0.05	h : 0.05	i : 0.05	" : 0.01	$ : 0.01	
c : 0.18	= : 0.12	g : 0.10	" : 0.07	d : 0.07	! : 0.07	i : 0.07	[ : 0.05	# : 0.05	b : 0.05	e : 0.05	h : 0.03	f : 0.01	$ : 0.01	
" : 0.18	[ : 0.14	c : 0.10	= : 0.10	g : 0.09	! : 0.07	i : 0.07	e : 0.05	# : 0.05	d : 0.03	f : 0.01	h : 0.01	$ : 0.01	a : 0.01	
" : 0.16	= : 0.10	d : 0.10	e : 0.10	c : 0.09	g : 0.09	a : 0.09	i : 0.07	# : 0.03	[ : 0.03	! : 0.03	f : 0.01	$ : 0.01	b : 0.01	
d : 0.20	[ : 0.14	! : 0.12	" : 0.12	= : 0.10	e : 0.07	i : 0.07	g : 0.03	c : 0.03	b : 0.03	f : 0.01	# : 0.01	
c : 0.27	d : 0.25	= : 0.10	! : 0.09	e : 0.07	i : 0.05	g : 0.03	b : 0.03	[ : 0.03	f : 0.01	" : 0.01	
c : 0.32	d : 0.23	= : 0.10	b : 0.09	e : 0.07	i : 0.05	[ : 0.03	g : 0.01	f : 0.01	" : 0.01	a : 0.01	
c : 0.30	d : 0.16	o : 0.12	b : 0.12	= : 0.09	i : 0.05	e : 0.05	[ : 0.03	a : 0.01	n : 0.01	
o : 0.61	c : 0.09	b : 0.05	d : 0.05	= : 0.03	m : 0.03	i : 0.03	[ : 0.01	n : 0.01	l : 0.01	a : 0.01	
o : 0.70	n : 0.09	l : 0.07	m : 0.05	a : 0.03	c : 0.01	i : 0.01	
o : 0.74	n : 0.09	l : 0.09	m : 0.05	c : 0.01	
o : 0.74	n : 0.09	l : 0.09	m : 0.05	= : 0.01	
o : 0.74	n : 0.07	= : 0.05	l : 0.03	c : 0.03	d : 0.03	m : 0.01	
o : 0.61	d : 0.09	n : 0.07	c : 0.05	= : 0.05	e : 0.01	f : 0.01	b : 0.01	l : 0.01	i : 0.01	a : 0.01	
c : 0.30	d : 0.20	o : 0.12	= : 0.09	b : 0.09	e : 0.07	i : 0.05	f : 0.01	a : 0.01	] : 0.01	
c : 0.27	d : 0.21	b : 0.14	= : 0.10	e : 0.07	i : 0.05	o : 0.03	] : 0.03	f : 0.01	3 : 0.01	a : 0.01	
c : 0.25	d : 0.20	= : 0.10	e : 0.07	b : 0.07	a : 0.07	3 : 0.05	i : 0.05	2 : 0.05	] : 0.03	f : 0.01	
] : 0.29	d : 0.14	2 : 0.12	3 : 0.10	= : 0.10	e : 0.09	i : 0.07	f : 0.01	h : 0.01	b : 0.01	
3 : 0.14	= : 0.12	d : 0.10	g : 0.09	c : 0.09	2 : 0.09	e : 0.09	i : 0.07	b : 0.05	a : 0.03	h : 0.03	] : 0.01	f : 0.01	4 : 0.01	
c : 0.20	= : 0.12	3 : 0.12	d : 0.10	g : 0.09	4 : 0.09	i : 0.07	2 : 0.03	b : 0.03	h : 0.03	e : 0.03	a : 0.01	] : 0.01	
c : 0.21	= : 0.12	g : 0.10	3 : 0.09	d : 0.09	4 : 0.09	i : 0.07	b : 0.05	e : 0.05	] : 0.03	h : 0.03	2 : 0.01	
c : 0.16	= : 0.12	e : 0.12	g : 0.10	4 : 0.10	d : 0.09	b : 0.07	3 : 0.07	i : 0.07	h : 0.03	a : 0.01	
] : 0.25	e : 0.12	4 : 0.12	g : 0.10	= : 0.09	c : 0.05	3 : 0.05	h : 0.05	i : 0.05	b : 0.03	d : 0.01	2 : 0.01	
e : 0.20	c : 0.18	g : 0.12	b : 0.09	= : 0.07	d : 0.07	h : 0.05	4 : 0.05	] : 0.03	3 : 0.03	i : 0.03	f : 0.01	2 : 0.01	
e : 0.21	c : 0.16	g : 0.14	d : 0.09	b : 0.07	h : 0.05	4 : 0.05	= : 0.03	2 : 0.03	f : 0.03	i : 0.03	3 : 0.03	a : 0.01	
c : 0.20	e : 0.20	] : 0.09	d : 0.09	2 : 0.07	3 : 0.05	f : 0.05	g : 0.05	h : 0.05	4 : 0.05	i : 0.03	= : 0.01	a : 0.01	
] : 0.14	e : 0.12	c : 0.10	d : 0.10	g : 0.09	f : 0.09	3 : 0.07	2 : 0.05	4 : 0.03	= : 0.03	h : 0.03	6 : 0.01	b : 0.01	i : 0.01	a : 0.01	9 : 0.01	
c : 0.18	e : 0.14	f : 0.09	g : 0.07	] : 0.07	b : 0.05	3 : 0.05	h : 0.05	6 : 0.03	a : 0.03	d : 0.03	4 : 0.03	= : 0.03	2 : 0.03	: : 0.01	i : 0.01	9 : 0.01	

#score	742.6339656394512
#seq	55
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_transcript_m3_run2.txt

#BEAR
f!!dddd[bbmmmmbb]dddd22f	chr22:49921213-49921423(-)$1	210	146	170	12.9728
::eeeee[bbmmmmbb333eeeee	chr1:36788258-36788519(+)$1	261	168	192	11.2813
ggg[ddddbbmmmmbb]ddddggg	chr17:79991715-79992017(+)$1	302	185	209	13.1371
ggggggg[bbmmmmbbggggggg]	chr4:160200330-160200621(+)$1	291	167	191	14.2437
iiiiiii[bbmmmmbb]iiiiiii	chr22:20112235-20112498(+)$1	263	200	224	15.1730
i[a[a[bbbbmmmmbb]bb]a]ai	chr2:240287769-240288057(-)$1	288	196	220	12.6654
e!!gggggggmmmmggggggg444	chr1:36790221-36790481(+)$1	260	20	44	10.1623
eeee####bbmmmmbb4444eeee	chr15:28395649-28395925(-)$1	276	181	205	13.0229
ggggggg[bbmmmmbb]ggggggg	chr9:138766832-138767144(-)$1	312	217	241	14.8675
ggggggg!!bblllbb22gggggg	chr21:45734502-45734770(+)$1	268	24	48	11.0877
gggg[bb[bbmmmmbb]bbggggg	chr21:46281763-46281992(-)$1	229	117	141	13.7086
ggggggg[bbmmmmbb]ggggggg	chr11:65190403-65190665(+)$1	262	100	124	14.8675
!eeeee!!bbmmmmbb333eeeee	chr16:89758116-89758368(+)$1	252	145	169	13.7511
h!!dddd!!ammmma22dddd333	chr5:134511935-134512208(+)$1	273	139	163	10.5485
ggggg####ammmma22ggggggg	chr16:30537318-30537652(-)$1	334	148	172	11.7680
==="""a[bbmmmmbba]======	chr3:52449589-52449943(+)$1	354	309	333	14.4618
gggggg!!bbmmmmbb22gggggg	chr3:178883792-178884066(+)$1	274	33	57	14.8070
cc"""a[cccmmmmccc]a4444c	chr8:11706085-11706368(-)$1	283	20	44	9.7596
[iiiiiiiiimmmmiiiiiiiii]	chr11:65374340-65374656(-)$1	316	242	266	11.3230
ggggggg!!bblllbb]ggggggg	chr17:80811048-80811308(+)$1	260	165	189	11.2051
e!!ccc!!bbmmmmbb4444ccc2	chr2:148719778-148720038(-)$1	260	126	150	13.5042
==========mmmm==========	chr1:885860-886104(-)$1	244	3	27	11.8498
ddd[ddddbbmmmmbb]dddd]dd	chrX:153584325-153584624(-)$1	299	119	143	11.8767
hhhhhhh[bbmmmmbbhhhhhhhh	chr19:46285183-46285474(-)$1	291	153	177	12.0821
ii"""bb[bbmmmmbb]bb]iiii	chr5:102521832-102522095(+)$1	263	99	123	13.5799
e[eeeee[bbmmmmbb]eeeee]e	chr19:50190465-50190766(+)$1	301	42	66	13.3253
[bbdddd[bbmmmmbb]dddd]bb	chr21:45734706-45734959(+)$1	253	3	27	12.1261
cccdddd[bbmmmmbb]dddd]cc	chr16:50337433-50337700(+)$1	267	128	152	13.0800
======!!bbmmmmbb22======	chr1:44053414-44053678(+)$1	264	166	190	15.1070
=======cccmmmmccc22=====	chr5:134512041-134512327(+)$1	286	64	88	11.1814
!!eeeee[bbmmmmbbeeeee22c	chr16:85669026-85669334(+)$1	308	57	81	12.4528
hhhhhhhhbbmmmmbb]hhhhhhh	chr1:44817738-44818011(-)$1	273	63	87	12.1403
ggggggg[bbmmmmbb]ggggggg	chr8:144875874-144876153(-)$1	279	155	179	14.8675
eeee"""cccmmmmccc]eeeeee	chr4:175237690-175237967(+)$1	277	144	168	9.8757
ggggggg[bbmmmmbb22gggggg	chr8:100231183-100231467(+)$1	284	43	67	14.7501
hhhhhhhhbbmmmmbb]hhhhhhh	chr16:22284477-22284755(+)$1	278	82	106	12.1403
dddd!!a[bbmmmmbb]a22dddd	chr17:80808405-80808719(+)$1	314	133	157	12.5612
eeee[a!!bbmmmmbb22a]eeee	chr2:64068081-64068414(+)$1	333	132	156	13.7157
a[ccc"""bbmmmmbb]ccc]a]b	chr19:862723-862986(+)$1	263	105	129	13.4552
###dddd[bbmmmmbb]ddddfff	chr22:50011784-50012020(-)$1	236	189	213	12.6481
eee[ccc!!ammmma22ccc]eee	chr22:49923893-49924115(-)$1	222	45	69	10.6991
iiiiiiddddmmmmdddd]iiiii	chr5:6600771-6601097(-)$1	326	248	272	9.6224
!!ccc[a[bbmmmmbbaccc22gg	chr10:101379837-101380153(-)$1	316	279	303	13.4223
eee[ccccccmmmmccc333ccc]	chr19:2209321-2209593(+)$1	272	132	156	10.2578
eeeccc[cccmmmmccc]ccc]ee	chr2:3355122-3355475(-)$1	353	104	128	10.1742

#otherMatches

#Seq PSSM
UCUGUGUCCAUGUUUGUGCACCug	chr22:49921213-49921423(-)$1	210	146	170	12.9728
ACCCCUACUCGAAGGGCAUUAGGG	chr1:36788258-36788519(+)$1	261	168	192	11.2813
CCCUGGCCCCCGCCGGAGGCCGGG	chr17:79991715-79992017(+)$1	302	185	209	13.1371
UCCUUUGUACAUAGGUUAAAGGAU	chr4:160200330-160200621(+)$1	291	167	191	14.2437
AGGGUUGGGCUUGAGUGCAGCCCU	chr22:20112235-20112498(+)$1	263	200	224	15.1730
GACCCUGACGACCCUGCUCUGUGC	chr2:240287769-240288057(-)$1	288	196	220	12.6654
UCCCCCAGUCCCGAGACUGGGUUC	chr1:36790221-36790481(+)$1	260	20	44	10.1623
GCCAUUCUCGGUGAUGUUCUUGGU	chr15:28395649-28395925(-)$1	276	181	205	13.0229
gauguguuauuaguauugcauauu	chr9:138766832-138767144(-)$1	312	217	241	14.8675
CCGCCCUCUGGUUCCCUUGGGGUG	chr21:45734502-45734770(+)$1	268	24	48	11.0877
UGCAUCAUCUUUCAAGCUGUGCGA	chr21:46281763-46281992(-)$1	229	117	141	13.7086
GCCAGGCUGUCCCUACUGCCUGGU	chr11:65190403-65190665(+)$1	262	100	124	14.8675
GGAGAAUAUGCCAACACCCUUCUC	chr16:89758116-89758368(+)$1	252	145	169	13.7511
GUGGGAGAGCUCUGGACCUCCAGU	chr5:134511935-134512208(+)$1	273	139	163	10.5485
UGAGGGGGGCGUGGGAAUUUCAGC	chr16:30537318-30537652(-)$1	334	148	172	11.7680
ucucuugugcagaugccuagaagu	chr3:52449589-52449943(+)$1	354	309	333	14.4618
ugaagucagggaugccauauuuua	chr3:178883792-178884066(+)$1	274	33	57	14.8070
UGAGGGGUGGCAUCCCAGCAAAAC	chr8:11706085-11706368(-)$1	283	20	44	9.7596
AGUGAGGCUGGUCACAGUCUCACA	chr11:65374340-65374656(-)$1	316	242	266	11.3230
ucucagcuuccuaaggugcuggga	chr17:80811048-80811308(+)$1	260	165	189	11.2051
uaccuuauucucaugaucuggagc	chr2:148719778-148720038(-)$1	260	126	150	13.5042
gugcaugcaugcgugugugugcac	chr1:885860-886104(-)$1	244	3	27	11.8498
CCAAGCCACUAACUAGAUGGCAUG	chrX:153584325-153584624(-)$1	299	119	143	11.8767
GGCUCAGAGUGUGGACCUGGGCCC	chr19:46285183-46285474(-)$1	291	153	177	12.0821
UAAGAGCCAUGUUAAUUGCAUGCU	chr5:102521832-102522095(+)$1	263	99	123	13.5799
GGCUUCCGGGGGAGCUGGGGGGGC	chr19:50190465-50190766(+)$1	301	42	66	13.3253
AAGGCCAGGGGCCCCCGUGGCUCU	chr21:45734706-45734959(+)$1	253	3	27	12.1261
GCUGGCCGUGCAUUCAGGGCCUGG	chr16:50337433-50337700(+)$1	267	128	152	13.0800
CUGGUCAGGGGAGUCCAAGGCUGG	chr1:44053414-44053678(+)$1	264	166	190	15.1070
GGCUUCUUCCUCAGGGACAGGGAG	chr5:134512041-134512327(+)$1	286	64	88	11.1814
ACUGCCUGCCUGGUGGAGGCAUCC	chr16:85669026-85669334(+)$1	308	57	81	12.4528
GACCAAGGCCUUUGGGAUCUUGGU	chr1:44817738-44818011(-)$1	273	63	87	12.1403
GCCCCUCCUCCAGGGAUGGGGGGU	chr8:144875874-144876153(-)$1	279	155	179	14.8675
UGGAAUUUCCUUCAGGACUCCACU	chr4:175237690-175237967(+)$1	277	144	168	9.8757
auuccaguugaccucauccuggaa	chr8:100231183-100231467(+)$1	284	43	67	14.7501
cuuuuaauugcaugcauauuaaga	chr16:22284477-22284755(+)$1	278	82	106	12.1403
gguugugugugcugACCCCGGACC	chr17:80808405-80808719(+)$1	314	133	157	12.5612
GGCUGCGACCGUUAGGGAGGGGCU	chr2:64068081-64068414(+)$1	333	132	156	13.7157
GGGUGGGGUCGGGGGAACACGUGG	chr19:862723-862986(+)$1	263	105	129	13.4552
UAUUCUCGGGAUGUUCAGGGAUGU	chr22:50011784-50012020(-)$1	236	189	213	12.6481
acuguguuucaacugccacaaggu	chr22:49923893-49924115(-)$1	222	45	69	10.6991
UGCUCUGGCAGCCCUGCUAAGGGC	chr5:6600771-6601097(-)$1	326	248	272	9.6224
CACGCACAUGGUGGCAGGCGCCGU	chr10:101379837-101380153(-)$1	316	279	303	13.4223
GCUGCCCCCUCUUGAGGCCUGGGG	chr19:2209321-2209593(+)$1	272	132	156	10.2578
UGUGGUUUCAGGGAUGGUGCCUAC	chr2:3355122-3355475(-)$1	353	104	128	10.1742

#DB
(..((((.((....)).))))..)	chr22:49921213-49921423(-)$1	1	146	170	12.9728
..(((((.((....))...)))))	chr1:36788258-36788519(+)$1	1	168	192	11.2813
(((.((((((....)).)))))))	chr17:79991715-79992017(+)$1	1	185	209	13.1371
(((((((.((....))))))))).	chr4:160200330-160200621(+)$1	1	167	191	14.2437
(((((((.((....)).)))))))	chr22:20112235-20112498(+)$1	1	200	224	15.1730
(.(.(.((((....)).)).).))	chr2:240287769-240288057(-)$1	1	196	220	12.6654
(..(((((((....)))))))...	chr1:36790221-36790481(+)$1	1	20	44	10.1623
((((....((....))....))))	chr15:28395649-28395925(-)$1	1	181	205	13.0229
(((((((.((....)).)))))))	chr9:138766832-138767144(-)$1	1	217	241	14.8675
(((((((..((...))..))))))	chr21:45734502-45734770(+)$1	1	24	48	11.0877
((((.((.((....)).)))))))	chr21:46281763-46281992(-)$1	1	117	141	13.7086
(((((((.((....)).)))))))	chr11:65190403-65190665(+)$1	1	100	124	14.8675
.(((((..((....))...)))))	chr16:89758116-89758368(+)$1	1	145	169	13.7511
(..((((..(....)..))))...	chr5:134511935-134512208(+)$1	1	139	163	10.5485
(((((....(....)..)))))))	chr16:30537318-30537652(-)$1	1	148	172	11.7680
(((...(.((....))).))))))	chr3:52449589-52449943(+)$1	1	309	333	14.4618
((((((..((....))..))))))	chr3:178883792-178884066(+)$1	1	33	57	14.8070
((...(.(((....))).)....)	chr8:11706085-11706368(-)$1	1	20	44	9.7596
.(((((((((....))))))))).	chr11:65374340-65374656(-)$1	1	242	266	11.3230
(((((((..((...)).)))))))	chr17:80811048-80811308(+)$1	1	165	189	11.2051
(..(((..((....))....))).	chr2:148719778-148720038(-)$1	1	126	150	13.5042
((((((((((....))))))))))	chr1:885860-886104(-)$1	1	3	27	11.8498
(((.((((((....)).)))).))	chrX:153584325-153584624(-)$1	1	119	143	11.8767
(((((((.((....))))))))))	chr19:46285183-46285474(-)$1	1	153	177	12.0821
((...((.((....)).)).))))	chr5:102521832-102522095(+)$1	1	99	123	13.5799
(.(((((.((....)).))))).)	chr19:50190465-50190766(+)$1	1	42	66	13.3253
.((((((.((....)).)))).))	chr21:45734706-45734959(+)$1	1	3	27	12.1261
(((((((.((....)).)))).))	chr16:50337433-50337700(+)$1	1	128	152	13.0800
((((((..((....))..))))))	chr1:44053414-44053678(+)$1	1	166	190	15.1070
((((((((((....)))..)))))	chr5:134512041-134512327(+)$1	1	64	88	11.1814
..(((((.((....)))))))..)	chr16:85669026-85669334(+)$1	1	57	81	12.4528
((((((((((....)).)))))))	chr1:44817738-44818011(-)$1	1	63	87	12.1403
(((((((.((....)).)))))))	chr8:144875874-144876153(-)$1	1	155	179	14.8675
((((...(((....))).)))))(	chr4:175237690-175237967(+)$1	1	144	168	9.8757
(((((((.((....))..))))))	chr8:100231183-100231467(+)$1	1	43	67	14.7501
((((((((((....)).)))))))	chr16:22284477-22284755(+)$1	1	82	106	12.1403
((((..(.((....)).)..))))	chr17:80808405-80808719(+)$1	1	133	157	12.5612
((((.(..((....))..).))))	chr2:64068081-64068414(+)$1	1	132	156	13.7157
(.(((...((....)).))).).)	chr19:862723-862986(+)$1	1	105	129	13.4552
...((((.((....)).)))))))	chr22:50011784-50012020(-)$1	1	189	213	12.6481
(((.(((..(....)..))).)))	chr22:49923893-49924115(-)$1	1	45	69	10.6991
((((((((((....)))).)))))	chr5:6600771-6601097(-)$1	1	248	272	9.6224
..(((.(.((....))))))..))	chr10:101379837-101380153(-)$1	1	279	303	13.4223
(((.((((((....)))...))).	chr19:2209321-2209593(+)$1	1	132	156	10.2578
((((((.(((....))).))).))	chr2:3355122-3355475(-)$1	1	104	128	10.1742

#PSSM
g : 0.24	e : 0.20	i : 0.08	h : 0.08	= : 0.08	! : 0.06	c : 0.04	[ : 0.04	d : 0.04	f : 0.02	: : 0.02	a : 0.02	# : 0.02	
g : 0.24	e : 0.15	! : 0.13	i : 0.08	= : 0.08	[ : 0.06	h : 0.06	c : 0.04	d : 0.04	: : 0.02	b : 0.02	# : 0.02	
g : 0.24	e : 0.22	! : 0.08	= : 0.08	i : 0.06	h : 0.06	c : 0.06	" : 0.04	d : 0.04	a : 0.02	b : 0.02	# : 0.02	
g : 0.24	e : 0.15	d : 0.13	[ : 0.11	c : 0.08	i : 0.06	" : 0.06	= : 0.06	h : 0.06	
g : 0.22	d : 0.15	c : 0.13	e : 0.08	" : 0.08	i : 0.06	= : 0.06	h : 0.06	[ : 0.04	a : 0.02	# : 0.02	! : 0.02	
g : 0.20	d : 0.15	e : 0.08	c : 0.08	i : 0.06	" : 0.06	= : 0.06	h : 0.06	[ : 0.04	# : 0.04	b : 0.04	a : 0.04	! : 0.02	
d : 0.17	g : 0.17	! : 0.11	e : 0.06	b : 0.06	a : 0.06	h : 0.06	i : 0.04	# : 0.04	[ : 0.04	= : 0.04	" : 0.04	c : 0.04	
[ : 0.42	! : 0.20	c : 0.11	d : 0.06	# : 0.04	h : 0.04	b : 0.02	g : 0.02	i : 0.02	= : 0.02	" : 0.02	
b : 0.68	c : 0.11	! : 0.08	g : 0.02	# : 0.02	i : 0.02	= : 0.02	d : 0.02	
b : 0.73	c : 0.11	a : 0.06	g : 0.02	i : 0.02	= : 0.02	d : 0.02	
m : 0.95	b : 0.04	
m : 0.95	l : 0.04	
m : 0.95	l : 0.04	
m : 0.95	l : 0.04	
b : 0.73	c : 0.11	a : 0.06	g : 0.02	i : 0.02	= : 0.02	d : 0.02	
b : 0.73	c : 0.11	2 : 0.06	g : 0.02	i : 0.02	= : 0.02	d : 0.02	
] : 0.42	2 : 0.17	c : 0.11	3 : 0.04	g : 0.04	4 : 0.04	a : 0.04	i : 0.02	= : 0.02	h : 0.02	e : 0.02	d : 0.02	
d : 0.17	g : 0.15	2 : 0.13	] : 0.08	3 : 0.06	b : 0.06	h : 0.06	c : 0.06	i : 0.04	4 : 0.04	e : 0.04	= : 0.02	a : 0.02	
g : 0.22	d : 0.15	c : 0.08	3 : 0.06	b : 0.06	= : 0.06	h : 0.06	e : 0.06	i : 0.04	4 : 0.04	a : 0.04	2 : 0.04	] : 0.02	
g : 0.24	d : 0.15	e : 0.11	= : 0.08	c : 0.08	i : 0.06	] : 0.06	4 : 0.06	h : 0.06	2 : 0.02	3 : 0.02	
g : 0.24	d : 0.17	e : 0.15	i : 0.08	= : 0.08	c : 0.06	h : 0.06	] : 0.04	a : 0.02	4 : 0.02	2 : 0.02	
g : 0.24	e : 0.15	] : 0.11	i : 0.08	= : 0.08	2 : 0.06	h : 0.06	4 : 0.04	c : 0.04	3 : 0.02	d : 0.02	a : 0.02	f : 0.02	
g : 0.26	e : 0.15	i : 0.08	= : 0.08	c : 0.06	h : 0.06	2 : 0.04	4 : 0.04	d : 0.04	] : 0.04	a : 0.02	3 : 0.02	b : 0.02	f : 0.02	
g : 0.24	e : 0.17	i : 0.08	= : 0.08	] : 0.06	c : 0.06	h : 0.06	f : 0.04	d : 0.04	b : 0.04	4 : 0.02	3 : 0.02	2 : 0.02	

#score	565.3116934287999
#seq	45
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_CDS_m1_run2.txt

#BEAR
ff^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:3668-3923(+)$1	255	80	114	44.3705
cc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]cc	chrM:10501-10709(+)$1	208	28	62	44.8175
^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:9748-9967(+)$1	219	92	126	47.8915
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrM:5277-5488(+)$1	211	92	126	46.2974
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11946-12152(+)$1	206	30	64	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:11171-11377(+)$1	206	128	162	46.9739
^^^^^^^^^^^^^^^^^^^^^^^^^^^^bbeeee	chrM:11042-11246(+)$1	204	76	110	46.8931
^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:9784-9990(+)$1	206	56	90	47.8915
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:11150-11367(+)$1	217	149	183	46.9739
^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb333e	chr3:124732211-124732454(-)$1	243	84	118	46.0259
ee^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee:	chrM:3745-3956(+)$1	211	3	37	44.3760
^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:9767-9977(+)$1	210	73	107	47.8915
^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:9777-9984(+)$1	207	63	97	47.8915
^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:9790-9998(+)$1	208	50	84	47.8915
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc:	chrM:11115-11342(+)$1	227	161	195	45.8429
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11962-12166(+)$1	204	14	48	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^bbeeee	chrM:11046-11252(+)$1	206	72	106	46.8931
e^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:3906-4145(+)$1	239	142	176	46.8602
^^^^^^^^^^^^^^^^^^^^^^^^^eeeeegggg	chrM:9231-9441(+)$1	210	78	112	42.6204
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11968-12174(+)$1	206	8	42	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrM:5272-5477(+)$1	205	97	131	46.2974
^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:9798-10004(+)$1	206	42	76	47.8915
^^^^^^^^^^^^^^^^^^^^^^^^^eeeeegggg	chrM:9206-9431(+)$1	225	103	137	42.6204
eee^^^^^^^^^^^^^^^^^^^^^^^^^eeeee8	chrM:13796-14026(+)$1	230	130	164	43.4988
f^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:7042-7264(+)$1	222	91	125	45.8154
eeeee^^^^^^^^^^^^^^^^^^^^^^^eeeee7	chrM:11868-12084(+)$1	216	50	84	40.2618
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11916-12121(+)$1	205	60	94	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:11195-11399(+)$1	204	104	138	46.9739
cc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]cc	chrM:10493-10701(+)$1	208	36	70	44.8175
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11904-12111(+)$1	207	72	106	46.8336
e^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:3999-4204(+)$1	205	49	83	46.8602
^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee4	chrM:5025-5264(+)$1	239	33	67	47.6410
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11921-12128(+)$1	207	55	89	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc:	chrM:11142-11347(+)$1	205	134	168	45.8429
eeeee^^^^^^^^^^^^^^^^^^^^^^^eeeee7	chrM:11852-12068(+)$1	216	66	100	40.2618
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:11177-11383(+)$1	206	122	156	46.9739
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11952-12157(+)$1	205	24	58	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11957-12162(+)$1	205	19	53	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:11189-11395(+)$1	206	110	144	46.9739
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:8967-9198(+)$1	231	124	158	46.3682
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:11199-11405(+)$1	206	100	134	46.9739
f^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:7037-7242(+)$1	205	96	130	45.8154
e^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:4004-4220(+)$1	216	44	78	46.8602
f^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:7014-7229(+)$1	215	119	153	45.8154
eeeee^^^^^^^^^^^^^^^^^^^^^^^eeeee7	chrM:11897-12100(+)$1	203	21	55	40.2618
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:13996-14213(+)$1	217	172	206	47.3677
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11928-12132(+)$1	204	48	82	46.8336
cc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]cc	chrM:10509-10726(+)$1	217	20	54	44.8175
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc:	chrM:11147-11350(+)$1	203	129	163	45.8429
e^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:3945-4161(+)$1	216	103	137	46.8602
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11932-12140(+)$1	208	44	78	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11966-12168(+)$1	202	10	44	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc22e	chrM:10711-10917(+)$1	206	167	201	46.4656
eeeee^^^^^^^^^^^^^^^^^^^^^^^eeeee7	chrM:11884-12097(+)$1	213	34	68	40.2618
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:11205-11414(+)$1	209	94	128	46.9739
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrM:5226-5472(+)$1	246	86	120	46.2974
e^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:3978-4185(+)$1	207	70	104	46.8602
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:13349-13559(+)$1	210	70	104	47.3677
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:11167-11371(+)$1	204	132	166	46.9739
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11944-12146(+)$1	202	32	66	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11940-12144(+)$1	204	36	70	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:11183-11389(+)$1	206	116	150	46.9739
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:11214-11424(+)$1	210	85	119	46.9739
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11900-12104(+)$1	204	76	110	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrM:5288-5503(+)$1	215	81	115	46.2974
e^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:3961-4178(+)$1	217	87	121	46.8602
^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11912-12116(+)$1	204	64	98	46.8336
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc22e	chrM:10719-10922(+)$1	203	159	193	46.4656
eee^^^^^^^^^^^^^^^^^^^^^^^^^eeeee4	chr11:32954632-32954923(+)$1	291	149	183	43.7982

#otherMatches

#Seq PSSM
AUCAUUCUACUAUCAACAUUACUAAUAAGUGGCU	chrM:3668-3923(+)$1	255	80	114	44.3705
AGUAUAUCGCUCACACCUCAUAUCCUCCCUACUA	chrM:10501-10709(+)$1	208	28	62	44.8175
UCAACUUUCCUCACUAUCUGCUUCAUCCGCCAAC	chrM:9748-9967(+)$1	219	92	126	47.8915
CUCAAUCACACUACUCCCCAUAUCUAACAACGUA	chrM:5277-5488(+)$1	211	92	126	46.2974
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11946-12152(+)$1	206	30	64	46.8336
UCUCACUGCCCAAGAACUAUCAAACUCCUGAGCC	chrM:11171-11377(+)$1	206	128	162	46.9739
UCUUCUUCGAAACCACACUUAUCCCCACCUUGGC	chrM:11042-11246(+)$1	204	76	110	46.8931
UCAACUUUCCUCACUAUCUGCUUCAUCCGCCAAC	chrM:9784-9990(+)$1	206	56	90	47.8915
UCUCACUGCCCAAGAACUAUCAAACUCCUGAGCC	chrM:11150-11367(+)$1	217	149	183	46.9739
CACCAUUUAUUUUCAUCAAUUUUACCAUCAACCA	chr3:124732211-124732454(-)$1	243	84	118	46.0259
AUCAUUCUACUAUCAACAUUACUAAUAAGUGGCU	chrM:3745-3956(+)$1	211	3	37	44.3760
UCAACUUUCCUCACUAUCUGCUUCAUCCGCCAAC	chrM:9767-9977(+)$1	210	73	107	47.8915
UCAACUUUCCUCACUAUCUGCUUCAUCCGCCAAC	chrM:9777-9984(+)$1	207	63	97	47.8915
UCAACUUUCCUCACUAUCUGCUUCAUCCGCCAAC	chrM:9790-9998(+)$1	208	50	84	47.8915
UCACUAAACAUUCUACUACUCACUCUCACUGCCC	chrM:11115-11342(+)$1	227	161	195	45.8429
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11962-12166(+)$1	204	14	48	46.8336
UCUUCUUCGAAACCACACUUAUCCCCACCUUGGC	chrM:11046-11252(+)$1	206	72	106	46.8931
GACGCACUCUCCCCUGAACUCUACACAACAUAUU	chrM:3906-4145(+)$1	239	142	176	46.8602
UUUCACUUCCACUCCAUAACGCUCCUCAUACUAG	chrM:9231-9441(+)$1	210	78	112	42.6204
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11968-12174(+)$1	206	8	42	46.8336
CUCAAUCACACUACUCCCCAUAUCUAACAACGUA	chrM:5272-5477(+)$1	205	97	131	46.2974
UCAACUUUCCUCACUAUCUGCUUCAUCCGCCAAC	chrM:9798-10004(+)$1	206	42	76	47.8915
UUUCACUUCCACUCCAUAACGCUCCUCAUACUAG	chrM:9206-9431(+)$1	225	103	137	42.6204
UAGCAUCACACACCGCACAAUCCCCUAUCUAGGC	chrM:13796-14026(+)$1	230	130	164	43.4988
CAAAAUCCAUUUCACUAUCAUAUUCAUCGGCGUA	chrM:7042-7264(+)$1	222	91	125	45.8154
UCCUGAUCAAAUAUCACUCUCCUACUUACAGGAC	chrM:11868-12084(+)$1	216	50	84	40.2618
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11916-12121(+)$1	205	60	94	46.8336
UCUCACUGCCCAAGAACUAUCAAACUCCUGAGCC	chrM:11195-11399(+)$1	204	104	138	46.9739
AGUAUAUCGCUCACACCUCAUAUCCUCCCUACUA	chrM:10493-10701(+)$1	208	36	70	44.8175
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11904-12111(+)$1	207	72	106	46.8336
GACGCACUCUCCCCUGAACUCUACACAACAUAUU	chrM:3999-4204(+)$1	205	49	83	46.8602
AACCCUAACAUAACCAUUCUUAAUUUAACUAUUU	chrM:5025-5264(+)$1	239	33	67	47.6410
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11921-12128(+)$1	207	55	89	46.8336
UCACUAAACAUUCUACUACUCACUCUCACUGCCC	chrM:11142-11347(+)$1	205	134	168	45.8429
UCCUGAUCAAAUAUCACUCUCCUACUUACAGGAC	chrM:11852-12068(+)$1	216	66	100	40.2618
UCUCACUGCCCAAGAACUAUCAAACUCCUGAGCC	chrM:11177-11383(+)$1	206	122	156	46.9739
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11952-12157(+)$1	205	24	58	46.8336
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11957-12162(+)$1	205	19	53	46.8336
UCUCACUGCCCAAGAACUAUCAAACUCCUGAGCC	chrM:11189-11395(+)$1	206	110	144	46.9739
ACACUUAUCAUCUUCACAAUUCUAAUUCUACUGA	chrM:8967-9198(+)$1	231	124	158	46.3682
UCUCACUGCCCAAGAACUAUCAAACUCCUGAGCC	chrM:11199-11405(+)$1	206	100	134	46.9739
CAAAAUCCAUUUCACUAUCAUAUUCAUCGGCGUA	chrM:7037-7242(+)$1	205	96	130	45.8154
GACGCACUCUCCCCUGAACUCUACACAACAUAUU	chrM:4004-4220(+)$1	216	44	78	46.8602
CAAAAUCCAUUUCACUAUCAUAUUCAUCGGCGUA	chrM:7014-7229(+)$1	215	119	153	45.8154
UCCUGAUCAAAUAUCACUCUCCUACUUACAGGAC	chrM:11897-12100(+)$1	203	21	55	40.2618
UCAAUUACAAUAUAUACACCAACAAACAAUGUUC	chrM:13996-14213(+)$1	217	172	206	47.3677
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11928-12132(+)$1	204	48	82	46.8336
AGUAUAUCGCUCACACCUCAUAUCCUCCCUACUA	chrM:10509-10726(+)$1	217	20	54	44.8175
UCACUAAACAUUCUACUACUCACUCUCACUGCCC	chrM:11147-11350(+)$1	203	129	163	45.8429
GACGCACUCUCCCCUGAACUCUACACAACAUAUU	chrM:3945-4161(+)$1	216	103	137	46.8602
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11932-12140(+)$1	208	44	78	46.8336
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11966-12168(+)$1	202	10	44	46.8336
UAUUUUUUAACCAAAUCAACAACAACCUAUUUAG	chrM:10711-10917(+)$1	206	167	201	46.4656
UCCUGAUCAAAUAUCACUCUCCUACUUACAGGAC	chrM:11884-12097(+)$1	213	34	68	40.2618
UCUCACUGCCCAAGAACUAUCAAACUCCUGAGCC	chrM:11205-11414(+)$1	209	94	128	46.9739
CAUAGCCACCAUCACCCUCCUUAACCUCUACUUC	chrM:5226-5472(+)$1	246	86	120	46.2974
GACGCACUCUCCCCUGAACUCUACACAACAUAUU	chrM:3978-4185(+)$1	207	70	104	46.8602
ACUACUCAAAACCAUACCUCUCACUUCAACCUCC	chrM:13349-13559(+)$1	210	70	104	47.3677
UCUCACUGCCCAAGAACUAUCAAACUCCUGAGCC	chrM:11167-11371(+)$1	204	132	166	46.9739
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11944-12146(+)$1	202	32	66	46.8336
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11940-12144(+)$1	204	36	70	46.8336
UCUCACUGCCCAAGAACUAUCAAACUCCUGAGCC	chrM:11183-11389(+)$1	206	116	150	46.9739
UCUCACUGCCCAAGAACUAUCAAACUCCUGAGCC	chrM:11214-11424(+)$1	210	85	119	46.9739
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11900-12104(+)$1	204	76	110	46.8336
CUCAAUCACACUACUCCCCAUAUCUAACAACGUA	chrM:5288-5503(+)$1	215	81	115	46.2974
GACGCACUCUCCCCUGAACUCUACACAACAUAUU	chrM:3961-4178(+)$1	217	87	121	46.8602
ACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11912-12116(+)$1	204	64	98	46.8336
UAUUUUUUAACCAAAUCAACAACAACCUAUUUAG	chrM:10719-10922(+)$1	203	159	193	46.4656
CAGACAUUACAAAAUAACAUAACUUCCCCUGACC	chr11:32954632-32954923(+)$1	291	149	183	43.7982

#DB
((..........................))))))	chrM:3668-3923(+)$1	1	80	114	44.3705
((..........................))).))	chrM:10501-10709(+)$1	1	28	62	44.8175
............................))))).	chrM:9748-9967(+)$1	1	92	126	47.8915
..............................))))	chrM:5277-5488(+)$1	1	92	126	46.2974
............................))))))	chrM:11946-12152(+)$1	1	30	64	46.8336
............................))))))	chrM:11171-11377(+)$1	1	128	162	46.9739
............................))))))	chrM:11042-11246(+)$1	1	76	110	46.8931
............................))))).	chrM:9784-9990(+)$1	1	56	90	47.8915
............................))))))	chrM:11150-11367(+)$1	1	149	183	46.9739
............................))...)	chr3:124732211-124732454(-)$1	1	84	118	46.0259
((..........................))))).	chrM:3745-3956(+)$1	1	3	37	44.3760
............................))))).	chrM:9767-9977(+)$1	1	73	107	47.8915
............................))))).	chrM:9777-9984(+)$1	1	63	97	47.8915
............................))))).	chrM:9790-9998(+)$1	1	50	84	47.8915
..............................))).	chrM:11115-11342(+)$1	1	161	195	45.8429
............................))))))	chrM:11962-12166(+)$1	1	14	48	46.8336
............................))))))	chrM:11046-11252(+)$1	1	72	106	46.8931
(...........................))))).	chrM:3906-4145(+)$1	1	142	176	46.8602
.........................)))))))))	chrM:9231-9441(+)$1	1	78	112	42.6204
............................))))))	chrM:11968-12174(+)$1	1	8	42	46.8336
..............................))))	chrM:5272-5477(+)$1	1	97	131	46.2974
............................))))).	chrM:9798-10004(+)$1	1	42	76	47.8915
.........................)))))))))	chrM:9206-9431(+)$1	1	103	137	42.6204
(((.........................))))).	chrM:13796-14026(+)$1	1	130	164	43.4988
(...........................))))))	chrM:7042-7264(+)$1	1	91	125	45.8154
(((((.......................))))).	chrM:11868-12084(+)$1	1	50	84	40.2618
............................))))))	chrM:11916-12121(+)$1	1	60	94	46.8336
............................))))))	chrM:11195-11399(+)$1	1	104	138	46.9739
((..........................))).))	chrM:10493-10701(+)$1	1	36	70	44.8175
............................))))))	chrM:11904-12111(+)$1	1	72	106	46.8336
(...........................))))).	chrM:3999-4204(+)$1	1	49	83	46.8602
............................))))).	chrM:5025-5264(+)$1	1	33	67	47.6410
............................))))))	chrM:11921-12128(+)$1	1	55	89	46.8336
..............................))).	chrM:11142-11347(+)$1	1	134	168	45.8429
(((((.......................))))).	chrM:11852-12068(+)$1	1	66	100	40.2618
............................))))))	chrM:11177-11383(+)$1	1	122	156	46.9739
............................))))))	chrM:11952-12157(+)$1	1	24	58	46.8336
............................))))))	chrM:11957-12162(+)$1	1	19	53	46.8336
............................))))))	chrM:11189-11395(+)$1	1	110	144	46.9739
...............................)))	chrM:8967-9198(+)$1	1	124	158	46.3682
............................))))))	chrM:11199-11405(+)$1	1	100	134	46.9739
(...........................))))))	chrM:7037-7242(+)$1	1	96	130	45.8154
(...........................))))).	chrM:4004-4220(+)$1	1	44	78	46.8602
(...........................))))))	chrM:7014-7229(+)$1	1	119	153	45.8154
(((((.......................))))).	chrM:11897-12100(+)$1	1	21	55	40.2618
.............................)))))	chrM:13996-14213(+)$1	1	172	206	47.3677
............................))))))	chrM:11928-12132(+)$1	1	48	82	46.8336
((..........................))).))	chrM:10509-10726(+)$1	1	20	54	44.8175
..............................))).	chrM:11147-11350(+)$1	1	129	163	45.8429
(...........................))))).	chrM:3945-4161(+)$1	1	103	137	46.8602
............................))))))	chrM:11932-12140(+)$1	1	44	78	46.8336
............................))))))	chrM:11966-12168(+)$1	1	10	44	46.8336
............................)))..)	chrM:10711-10917(+)$1	1	167	201	46.4656
(((((.......................))))).	chrM:11884-12097(+)$1	1	34	68	40.2618
............................))))))	chrM:11205-11414(+)$1	1	94	128	46.9739
..............................))))	chrM:5226-5472(+)$1	1	86	120	46.2974
(...........................))))).	chrM:3978-4185(+)$1	1	70	104	46.8602
.............................)))))	chrM:13349-13559(+)$1	1	70	104	47.3677
............................))))))	chrM:11167-11371(+)$1	1	132	166	46.9739
............................))))))	chrM:11944-12146(+)$1	1	32	66	46.8336
............................))))))	chrM:11940-12144(+)$1	1	36	70	46.8336
............................))))))	chrM:11183-11389(+)$1	1	116	150	46.9739
............................))))))	chrM:11214-11424(+)$1	1	85	119	46.9739
............................))))))	chrM:11900-12104(+)$1	1	76	110	46.8336
..............................))))	chrM:5288-5503(+)$1	1	81	115	46.2974
(...........................))))).	chrM:3961-4178(+)$1	1	87	121	46.8602
............................))))))	chrM:11912-12116(+)$1	1	64	98	46.8336
............................)))..)	chrM:10719-10922(+)$1	1	159	193	46.4656
(((.........................))))).	chr11:32954632-32954923(+)$1	1	149	183	43.7982

#PSSM
^ : 0.71	e : 0.18	f : 0.05	c : 0.04	
^ : 0.84	e : 0.10	c : 0.04	f : 0.01	
^ : 0.91	e : 0.08	
^ : 0.94	e : 0.05	
^ : 0.94	e : 0.05	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.97	e : 0.02	
^ : 0.97	e : 0.02	
^ : 0.97	e : 0.02	
e : 0.31	h : 0.21	f : 0.20	^ : 0.14	c : 0.07	b : 0.04	
e : 0.34	h : 0.21	f : 0.20	^ : 0.11	c : 0.07	b : 0.04	
e : 0.34	h : 0.21	f : 0.20	c : 0.11	d : 0.05	g : 0.02	3 : 0.01	^ : 0.01	
e : 0.34	h : 0.21	f : 0.20	d : 0.05	c : 0.05	] : 0.04	g : 0.02	2 : 0.02	3 : 0.01	
e : 0.34	h : 0.21	f : 0.20	c : 0.10	d : 0.05	g : 0.02	2 : 0.02	3 : 0.01	
h : 0.21	f : 0.20	] : 0.17	e : 0.10	c : 0.05	d : 0.05	: : 0.05	7 : 0.05	g : 0.02	4 : 0.02	8 : 0.01	

#score	3179.193523950201
#seq	69
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_UTR_m2_run2.txt

#BEAR
fffff[cccooooooccc333	chr2:203630730-203630989(+)$1	259	30	51	12.9734
$$$$$ddddoooooodddd33	chr13:31035425-31035661(-)$1	236	157	178	10.7468
!!gggggggoooooogggggg	chr9:100777600-100777819(+)$1	219	26	47	12.0259
e"""ddddooooooddddeee	chr9:34634651-34634896(-)$1	245	23	44	9.4813
eeeffffffooooooffffff	chr13:113540773-113541012(+)$1	239	19	40	10.7259
b[ccc[cccnnnnncccccc2	chr4:1018978-1019235(+)$1	257	175	196	8.3736
""ccc[cccooooooccc]cc	chr21:46915687-46915930(+)$1	243	119	140	13.8478
ddddddd[aooooooa]dddd	chr13:113539408-113539708(+)$1	300	215	236	10.2480
&&gggggggoooooogggggg	chr7:128499126-128499342(+)$1	216	141	162	10.9096
ccccc[cccooooooccc]cc	chr13:114536508-114536754(-)$1	246	188	209	13.2999
ffbb[ddddoooooodddd]b	chr12:48438586-48438840(-)$1	254	98	119	10.3689
b[ccc[cccnnnnncccccc2	chr4:1019067-1019333(+)$1	266	86	107	8.3736
&&ccc[cccooooooccc]cc	chr16:4854620-4854869(-)$1	249	13	34	12.6664
dddffffffooooooffffff	chr7:148514800-148515060(-)$1	260	112	133	10.6349
gggggg[bboooooobb22gg	chr19:10490951-10491227(-)$1	276	81	102	11.5102
"""ffffffooooooffffff	chr11:57174505-57174762(-)$1	257	79	100	11.4301
"""ffffffooooooffffff	chr13:30779920-30780180(-)$1	260	209	230	11.4301
eeeee[cccooooooccc22e	chr11:57174990-57175237(-)$1	247	125	146	12.5145
gg::bbcccooooooccc]bb	chr12:6879238-6879468(+)$1	230	115	136	9.7755
c####ddddoooooodddd88	chr17:38246781-38247076(+)$1	295	248	269	10.4429
dddd!!cccooooooccc>>>	chr12:123998056-123998283(-)$1	227	63	84	12.0561
eeee!!cccooooooccc333	chr16:4740127-4740386(+)$1	259	115	136	13.1963
eeeee[cccooooooccc]ee	chr10:50534924-50535238(+)$1	314	202	223	12.6011
::bb[ddddoooooodddd]b	chr12:48438522-48438786(-)$1	264	44	65	8.9631
dddd!!cccooooooccc444	chr15:59205685-59205919(-)$1	234	27	48	12.7075
eeeee!!bboooooobb]eee	chr4:174253059-174253264(-)$1	205	156	177	11.0733
""ccc[cccooooooccc]cc	chr21:46915769-46915996(+)$1	227	37	58	13.8478
:ccc[ddddoooooodddd22	chr12:105155171-105155460(+)$1	289	253	274	10.2446
:ccc[ddddoooooodddd]c	chr19:41938663-41938958(-)$1	295	11	32	10.6003
fff####bboooooobb22ff	chr22:20052344-20052622(+)$1	278	195	216	11.0794
""eeeee!!aooooooa22ee	chr1:150192892-150193157(-)$1	265	175	196	10.2643
dddd!!cccooooooccc22d	chr22:24313477-24313756(-)$1	279	233	254	12.4698
ccc[bb[bboooooobb22bb	chr12:49976589-49976836(+)$1	247	163	184	10.5179
""bb[ddddoooooodddd]b	chr22:50297103-50297357(-)$1	254	196	217	11.1175
ccc[bb[bboooooobb22bb	chr12:49976648-49976871(+)$1	223	104	125	10.5179
b[ccc[cccnnnnnccc]ccc	chr21:46915926-46916159(+)$1	233	162	183	8.5128
ffffff!!aooooooa22fff	chr5:122165409-122165705(+)$1	296	234	255	10.6488
fffff[cccooooooccc]ff	chr4:1019475-1019812(+)$1	337	66	87	12.6902
""ccc[cccooooooccc]cc	chr21:46915623-46915876(+)$1	253	183	204	13.8478
eeeee!!bboooooobb]eee	chr4:174253021-174253252(-)$1	231	144	165	11.0733
!!gggggggoooooogggggg	chr9:100777619-100777830(+)$1	211	7	28	12.0259
d"""ddddoooooodddd]dd	chr13:113539577-113539815(+)$1	238	196	217	9.7195
iiiiiii[aooooooa]iiii	chr16:89367073-89367337(-)$1	264	121	142	11.3540
eeeee!!bboooooobb]eee	chr4:174253064-174253276(-)$1	212	168	189	11.0733
c[ccc!!bboooooobb22cc	chr9:80646048-80646334(-)$1	286	210	231	12.2460
dd[ffffffooooooffffff	chr7:128498682-128498960(+)$1	278	78	99	10.7283
eeee!!cccooooooccc333	chr15:75952705-75952957(+)$1	252	94	115	13.1963
""ccc[cccooooooccc]cc	chr21:46915676-46915880(+)$1	204	130	151	13.8478
&&gggggggoooooogggggg	chr11:129992096-129992363(+)$1	267	132	153	10.9096
33ddddcccoooooocccddd	chr12:76449778-76450000(-)$1	222	169	190	10.7531
b!!ffffffooooooffffff	chr19:10488978-10489217(-)$1	239	65	86	11.1003
dccc!!cccnnnnnccc22cc	chr14:102965245-102965508(+)$1	263	167	188	8.6133
""ccc[cccooooooccc]cc	chr21:46915796-46916014(+)$1	218	10	31	13.8478

#otherMatches

#Seq PSSM
GUUUUCGAAUUAGACUUCUUU	chr2:203630730-203630989(+)$1	259	30	51	12.9734
AUGAUGAAUAAGUUGGUUCUA	chr13:31035425-31035661(-)$1	236	157	178	10.7468
AAUUUUUGUUACUGUACagag	chr9:100777600-100777819(+)$1	219	26	47	12.0259
AAGGGGCCCUUCCUGGCCUGG	chr9:34634651-34634896(-)$1	245	23	44	9.4813
GGAAGUUACCCAUUUGUAACU	chr13:113540773-113541012(+)$1	239	19	40	10.7259
UGGGCACGGGGGGGCCGGCCA	chr4:1018978-1019235(+)$1	257	175	196	8.3736
CUAUGAGCCCUCCCUGGCCCA	chr21:46915687-46915930(+)$1	243	119	140	13.8478
CAGAGAGACGUAUGAGCUUCU	chr13:113539408-113539708(+)$1	300	215	236	10.2480
AUGCAGCUCAGCUGGGAGCUG	chr7:128499126-128499342(+)$1	216	141	162	10.9096
CCUGUCACACUGACCUGUCAC	chr13:114536508-114536754(-)$1	246	188	209	13.2999
UGUUGUUAGGCCUUACUAAGA	chr12:48438586-48438840(-)$1	254	98	119	10.3689
UGGGCACGGGGGGGCCGGCCA	chr4:1019067-1019333(+)$1	266	86	107	8.3736
CCUUCCAGUCAAGGAACUAGA	chr16:4854620-4854869(-)$1	249	13	34	12.6664
GGGUUUUACUGUUCUGUGAAA	chr7:148514800-148515060(-)$1	260	112	133	10.6349
GUCCUCAGGAAGAAGCCGCGG	chr19:10490951-10491227(-)$1	276	81	102	11.5102
uguaaaauugagaugaauuuu	chr11:57174505-57174762(-)$1	257	79	100	11.4301
aGAGUCUUUAUUGCAGAAGAC	chr13:30779920-30780180(-)$1	260	209	230	11.4301
GCAGCAAGAAAAGAAUCUCAG	chr11:57174990-57175237(-)$1	247	125	146	12.5145
GCCCGCGCUGAAGAGAGCUGC	chr12:6879238-6879468(+)$1	230	115	136	9.7755
UGCUCCUUUUUCUUUAAAGCU	chr17:38246781-38247076(+)$1	295	248	269	10.4429
GGUCUUUCCGUAUCAGGAUAA	chr12:123998056-123998283(-)$1	227	63	84	12.0561
UCCUGGGCCGCAGAUGGCAAA	chr16:4740127-4740386(+)$1	259	115	136	13.1963
UUGGCCCGGUCCCCUCCGUGC	chr10:50534924-50535238(+)$1	314	202	223	12.6011
UGUUGUUAGGCCUUACUAAGA	chr12:48438522-48438786(-)$1	264	44	65	8.9631
UGUGAAUUGGAGAAUCAAGAG	chr15:59205685-59205919(-)$1	234	27	48	12.7075
UAUAGCUGAUAAGAUUCUCUG	chr4:174253059-174253264(-)$1	205	156	177	11.0733
CUAUGAGCCCUCCCUGGCCCA	chr21:46915769-46915996(+)$1	227	37	58	13.8478
CCUACAGGCAACAAGGCCUUC	chr12:105155171-105155460(+)$1	289	253	274	10.2446
CGCUGUUGCAGAACAGCAGGA	chr19:41938663-41938958(-)$1	295	11	32	10.6003
auggacaccgacacaggcaca	chr22:20052344-20052622(+)$1	278	195	216	11.0794
GACCAGAUUCUCUAAUGUUUC	chr1:150192892-150193157(-)$1	265	175	196	10.2643
UCUGGGGCCACCAUGGGCAGC	chr22:24313477-24313756(-)$1	279	233	254	12.4698
auuguuaccaaagcaggagaa	chr12:49976589-49976836(+)$1	247	163	184	10.5179
ACCCAGGCACCUGUCUGCCAG	chr22:50297103-50297357(-)$1	254	196	217	11.1175
auuguuaccaaagcaggagaa	chr12:49976648-49976871(+)$1	223	104	125	10.5179
UUGAGCCAAGAGCUUUGUCUC	chr21:46915926-46916159(+)$1	233	162	183	8.5128
AGAAAAUUUUACAAUAUUUUU	chr5:122165409-122165705(+)$1	296	234	255	10.6488
GUCUGGACGCACACACGUGCA	chr4:1019475-1019812(+)$1	337	66	87	12.6902
CUAUGAGCCCUCCCUGGCCCA	chr21:46915623-46915876(+)$1	253	183	204	13.8478
UAUAGCUGAUAAGAUUCUCUG	chr4:174253021-174253252(-)$1	231	144	165	11.0733
AAUUUUUGUUACUGUACagag	chr9:100777619-100777830(+)$1	211	7	28	12.0259
cacaugugagcucccacacgu	chr13:113539577-113539815(+)$1	238	196	217	9.7195
ACCCUGGUCUCUGGUGCCUGG	chr16:89367073-89367337(-)$1	264	121	142	11.3540
UAUAGCUGAUAAGAUUCUCUG	chr4:174253064-174253276(-)$1	212	168	189	11.0733
UGCCUGAGCGAGGAGGCCAAG	chr9:80646048-80646334(-)$1	286	210	231	12.2460
ACCUUGUCUGUGUCAGGACAG	chr7:128498682-128498960(+)$1	278	78	99	10.7283
GACUCACGAAUGUAAUCGCUC	chr15:75952705-75952957(+)$1	252	94	115	13.1963
CUAUGAGCCCUCCCUGGCCCA	chr21:46915676-46915880(+)$1	204	130	151	13.8478
ACUUCACAGAAGCAGCUGUgg	chr11:129992096-129992363(+)$1	267	132	153	10.9096
GCUCAGUGAUAUGGUUCAGGU	chr12:76449778-76450000(-)$1	222	169	190	10.7531
AGGGGUCUCUGGGCUGAGACU	chr19:10488978-10489217(-)$1	239	65	86	11.1003
GGCUGCCCGCCUCCUGGAGAG	chr14:102965245-102965508(+)$1	263	167	188	8.6133
CUAUGAGCCCUCCCUGGCCCA	chr21:46915796-46916014(+)$1	218	10	31	13.8478

#DB
(((((.(((......)))...	chr2:203630730-203630989(+)$1	1	30	51	12.9734
.....((((......))))..	chr13:31035425-31035661(-)$1	1	157	178	10.7468
..(((((((......))))))	chr9:100777600-100777819(+)$1	1	26	47	12.0259
(...((((......)))))))	chr9:34634651-34634896(-)$1	1	23	44	9.4813
)))((((((......))))))	chr13:113540773-113541012(+)$1	1	19	40	10.7259
(.(((.(((.....)))))).	chr4:1018978-1019235(+)$1	1	175	196	8.3736
..(((.(((......))).))	chr21:46915687-46915930(+)$1	1	119	140	13.8478
(((((((.(......).))))	chr13:113539408-113539708(+)$1	1	215	236	10.2480
..(((((((......))))))	chr7:128499126-128499342(+)$1	1	141	162	10.9096
(((((.(((......))).))	chr13:114536508-114536754(-)$1	1	188	209	13.2999
((((.((((......)))).)	chr12:48438586-48438840(-)$1	1	98	119	10.3689
(.(((.(((.....)))))).	chr4:1019067-1019333(+)$1	1	86	107	8.3736
..(((.(((......))).))	chr16:4854620-4854869(-)$1	1	13	34	12.6664
(((((((((......))))))	chr7:148514800-148515060(-)$1	1	112	133	10.6349
((((((.((......))..))	chr19:10490951-10491227(-)$1	1	81	102	11.5102
...((((((......))))))	chr11:57174505-57174762(-)$1	1	79	100	11.4301
...((((((......))))))	chr13:30779920-30780180(-)$1	1	209	230	11.4301
(((((.(((......)))..)	chr11:57174990-57175237(-)$1	1	125	146	12.5145
))..(((((......))).))	chr12:6879238-6879468(+)$1	1	115	136	9.7755
(....((((......))))..	chr17:38246781-38247076(+)$1	1	248	269	10.4429
((((..(((......)))...	chr12:123998056-123998283(-)$1	1	63	84	12.0561
((((..(((......)))...	chr16:4740127-4740386(+)$1	1	115	136	13.1963
(((((.(((......))).))	chr10:50534924-50535238(+)$1	1	202	223	12.6011
..((.((((......)))).)	chr12:48438522-48438786(-)$1	1	44	65	8.9631
((((..(((......)))...	chr15:59205685-59205919(-)$1	1	27	48	12.7075
(((((..((......)).)))	chr4:174253059-174253264(-)$1	1	156	177	11.0733
..(((.(((......))).))	chr21:46915769-46915996(+)$1	1	37	58	13.8478
.(((.((((......))))..	chr12:105155171-105155460(+)$1	1	253	274	10.2446
.(((.((((......)))).)	chr19:41938663-41938958(-)$1	1	11	32	10.6003
(((....((......))..))	chr22:20052344-20052622(+)$1	1	195	216	11.0794
..(((((..(......)..))	chr1:150192892-150193157(-)$1	1	175	196	10.2643
((((..(((......)))..)	chr22:24313477-24313756(-)$1	1	233	254	12.4698
(((.((.((......))..))	chr12:49976589-49976836(+)$1	1	163	184	10.5179
..((.((((......)))).)	chr22:50297103-50297357(-)$1	1	196	217	11.1175
(((.((.((......))..))	chr12:49976648-49976871(+)$1	1	104	125	10.5179
(.(((.(((.....))).)))	chr21:46915926-46916159(+)$1	1	162	183	8.5128
((((((..(......)..)))	chr5:122165409-122165705(+)$1	1	234	255	10.6488
(((((.(((......))).))	chr4:1019475-1019812(+)$1	1	66	87	12.6902
..(((.(((......))).))	chr21:46915623-46915876(+)$1	1	183	204	13.8478
(((((..((......)).)))	chr4:174253021-174253252(-)$1	1	144	165	11.0733
..(((((((......))))))	chr9:100777619-100777830(+)$1	1	7	28	12.0259
(...((((......)))).))	chr13:113539577-113539815(+)$1	1	196	217	9.7195
(((((((.(......).))))	chr16:89367073-89367337(-)$1	1	121	142	11.3540
(((((..((......)).)))	chr4:174253064-174253276(-)$1	1	168	189	11.0733
(.(((..((......))..))	chr9:80646048-80646334(-)$1	1	210	231	12.2460
((.((((((......))))))	chr7:128498682-128498960(+)$1	1	78	99	10.7283
((((..(((......)))...	chr15:75952705-75952957(+)$1	1	94	115	13.1963
..(((.(((......))).))	chr21:46915676-46915880(+)$1	1	130	151	13.8478
..(((((((......))))))	chr11:129992096-129992363(+)$1	1	132	153	10.9096
..))))(((......)))(((	chr12:76449778-76450000(-)$1	1	169	190	10.7531
(..((((((......))))))	chr19:10488978-10489217(-)$1	1	65	86	11.1003
)(((..(((.....)))..))	chr14:102965245-102965508(+)$1	1	167	188	8.6133
..(((.(((......))).))	chr21:46915796-46916014(+)$1	1	10	31	13.8478

#PSSM
e : 0.16	" : 0.16	d : 0.15	f : 0.09	c : 0.09	b : 0.07	& : 0.05	: : 0.05	! : 0.03	g : 0.03	$ : 0.01	i : 0.01	3 : 0.01	
" : 0.20	e : 0.15	d : 0.11	c : 0.11	f : 0.09	[ : 0.07	! : 0.05	& : 0.05	g : 0.03	$ : 0.01	# : 0.01	: : 0.01	i : 0.01	3 : 0.01	
c : 0.30	e : 0.16	d : 0.11	g : 0.09	f : 0.07	" : 0.07	b : 0.05	$ : 0.01	: : 0.01	# : 0.01	i : 0.01	[ : 0.01	! : 0.01	
c : 0.26	f : 0.16	e : 0.15	g : 0.09	d : 0.09	b : 0.05	" : 0.03	# : 0.03	[ : 0.03	$ : 0.01	: : 0.01	i : 0.01	
c : 0.20	f : 0.16	e : 0.11	! : 0.11	g : 0.09	[ : 0.09	d : 0.07	b : 0.05	# : 0.03	$ : 0.01	i : 0.01	
[ : 0.26	d : 0.20	! : 0.18	f : 0.13	g : 0.09	b : 0.05	# : 0.01	e : 0.01	i : 0.01	
c : 0.41	d : 0.18	f : 0.11	! : 0.09	g : 0.07	[ : 0.05	# : 0.01	e : 0.01	i : 0.01	
c : 0.41	d : 0.16	b : 0.15	f : 0.11	g : 0.07	[ : 0.03	! : 0.03	
c : 0.41	b : 0.15	d : 0.13	f : 0.11	g : 0.07	a : 0.05	o : 0.03	! : 0.01	
o : 0.90	n : 0.07	a : 0.01	
o : 0.92	n : 0.07	
o : 0.92	n : 0.07	
o : 0.92	n : 0.07	
o : 0.92	n : 0.07	
o : 0.88	c : 0.07	d : 0.03	
c : 0.41	d : 0.16	b : 0.15	f : 0.11	g : 0.07	a : 0.05	o : 0.01	
c : 0.41	d : 0.16	b : 0.15	f : 0.11	g : 0.07	] : 0.03	a : 0.01	2 : 0.01	
c : 0.37	d : 0.18	2 : 0.15	f : 0.11	g : 0.07	] : 0.07	i : 0.01	
] : 0.20	d : 0.16	2 : 0.16	f : 0.13	g : 0.07	e : 0.07	3 : 0.05	c : 0.05	> : 0.01	4 : 0.01	i : 0.01	
c : 0.22	f : 0.16	e : 0.11	g : 0.09	3 : 0.07	] : 0.07	d : 0.05	2 : 0.05	b : 0.05	8 : 0.01	> : 0.01	4 : 0.01	i : 0.01	
c : 0.20	f : 0.16	e : 0.13	b : 0.11	g : 0.09	3 : 0.07	d : 0.07	2 : 0.05	8 : 0.01	> : 0.01	4 : 0.01	i : 0.01	

#score	599.2271065784471
#seq	53
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_transcript_m2_run1.txt

#BEAR
ggggggg####eeeeellleeeeeggggggg]a	chr7:47325875-47326191(-)$1	316	30	63	14.5713
d[ggggggg!!ddddllldddd333gggggggd	chr16:18817779-18818016(-)$1	237	194	227	11.7879
dd[a[bb"""eeeeemmmmeeeee333bba]dd	chr7:66232819-66233091(+)$1	272	200	233	14.6227
ffgggggggffffffmmmmffffff]ggggggg	chr1:169454479-169454732(-)$1	253	181	214	10.2379
++ccc"""eeeeeooooooeeeee333ccciii	chr20:21299206-21299455(+)$1	249	115	148	12.9229
cc[ccc!!a[eeeeemmmmeeeee]a22ccc]c	chr1:8645949-8646207(-)$1	258	193	226	15.8095
ffffff$$$$$ddddmmmmdddd]ffffffeee	chr20:60637989-60638226(-)$1	237	16	49	11.0205
c!!eeeeeeeeeeooooooeeeee]eeeee]cc	chrY:2717420-2717740(+)$1	320	4	37	12.1757
fff!!ccc!!eeeeennnnneeeee22cccfff	chr1:31497646-31497861(-)$1	215	73	106	12.7088
iiiii[eeeee[cccmmmmccc]eeeeeiiiii	chr4:189411023-189411278(+)$1	255	170	203	10.8846
gggggccc"""cccmmmmcccccc]ggggggg]	chr1:27032776-27033022(+)$1	246	151	184	10.7750
:eeeee"""eeeeeooooooeeeeeeeeeeccc	chr1:2180501-2180807(+)$1	306	153	186	11.9188
iiiiiiiieeeeebbmmmmbb4444eeeee]ii	chr17:56069333-56069569(-)$1	236	49	82	10.7909
ddd[ccceeeeecccmmmmccc4444eeeee]c	chr1:42677261-42677528(-)$1	267	92	125	11.3658
:ggggggg[addddoooooodddd]a]gggggg	chr1:32573829-32574100(+)$1	271	201	234	11.2247
##dddd!!gggggggmmmmggggggg]dddd]h	chr14:99898035-99898339(-)$1	304	67	100	10.6594
e!!dddd####ddddmmmmdddd4444dddd22	chr7:36292926-36293193(+)$1	267	225	258	12.5034
eeeecccbb[eeeeemmmmeeeee]bb]ccc]e	chr20:47901837-47902075(+)$1	238	150	183	13.8717
ciiiiiiiiieeeeemmmmeeeee22iiiiiii	chr1:21362445-21362732(-)$1	287	219	252	14.9118
"ggggggg!!eeeeemmmmeeeee]ggggggg2	chr8:119060303-119060566(-)$1	263	95	128	15.7739
cc!!ccc"""eeeeennnnneeeee4444ccc2	chr16:89500977-89501234(-)$1	257	42	75	13.9016
iiiiiiiii!!ddddmmmmdddd]iiiiiiiii	chr2:61499541-61499803(-)$1	262	179	212	12.8837
ccc[ffffff[eeeeellleeeee]ffffff]c	chr7:138172278-138172511(+)$1	233	188	221	12.7073
ddd[a$$$$$eeeeennnnneeeeea]dddd]b	chr5:6721602-6721863(+)$1	261	124	157	11.7886
Jdddddddd[eeeeemmmmeeeee]dddd]ddd	chr16:81483589-81483847(+)$1	258	77	110	11.0043
"""ffffff!!ddddmmmmdddd22ffffff]a	chr6:3318880-3319119(-)$1	239	146	179	11.9452
ffffff!!bbeeeeemmmmeeeee22bb22fff	chr11:3009585-3009843(-)$1	258	141	174	12.8084
b[a[ccc"""eeeeemmmmeeeee333ccca]b	chr18:55922492-55922764(+)$1	272	124	157	16.2014
!ffffff"""ddddnnnnndddd333ffffff4	chr5:38865961-38866207(+)$1	246	68	101	11.4786
b[ccc"""gggggggmmmmggggggg333ccc]	chr2:236599221-236599490(+)$1	269	130	163	11.7606
ffffffbb[eeeeeooooooeeeeebb]fffff	chr17:63550820-63551051(-)$1	231	160	193	11.2604
""dddd"""eeeeennnnneeeee]ddddccc2	chr8:141695172-141695421(-)$1	249	130	163	12.3907
cceeeee[a[eeeeemmmmeeeee]a]eeeee2	chr22:47465815-47466061(+)$1	246	183	216	14.7304
eeee####gggggggmmmmgggggggeeeeedd	chr6:143499056-143499318(+)$1	262	20	53	10.6065
=======!!ggggggglllggggggg=======	chr19:28279743-28280096(-)$1	353	219	252	11.4947
::ggggggg[eeeeellleeeeegggggggggg	chr16:152004-152256(-)$1	252	48	81	11.5789
dd[ccc[eeeee[aooooooa]eeeee]ccc]d	chr10:80980852-80981107(+)$1	255	190	223	10.8892
g"""ccc[a[eeeeemmmmeeeee]a]ccc]gg	chr14:105899514-105899803(+)$1	289	147	180	15.7919
iiiia!!ccceeeeemmmmeeeee]ccc22a22	chr18:77701152-77701379(-)$1	227	156	189	14.0206
ddd"""eeeeeddddmmmmdddd]eeeee333d	chr6:160522235-160522507(+)$1	272	156	189	10.9779
ggggggg[bb[ddddmmmmdddd22bb]ggggg	chr16:23132578-23132844(-)$1	266	23	56	11.7052
:a[bb[ccc[eeeeemmmmeeeee]ccc]bb]a	chr8:141141587-141141831(-)$1	244	111	144	13.2504
eeee[ccc!!eeeeemmmmeeeeeccc]eeeee	chr21:46838995-46839293(+)$1	298	77	110	14.1869
[ggggggg"""eeeeellleeeee4444ggggg	chr1:2191508-2191812(+)$1	304	142	175	14.8332
ff[bb!!eeeeeddddllldddd4444eeeee2	chr3:43353161-43353415(+)$1	254	13	46	11.3781
e"""ccc####ddddnnnnndddd4444ccc22	chr7:130770433-130770696(-)$1	263	117	150	11.9163
ee[bb[ccc[eeeeellleeeeeccc]bb]eee	chr17:74338025-74338335(-)$1	310	113	146	11.6773
ffffff####eeeeemmmmeeeee4444fffff	chr2:32584253-32584567(+)$1	314	39	72	15.3786
!ffffff!!a[eeeeellleeeee]affffff3	chr12:108935950-108936264(-)$1	314	98	131	13.8671
ffffffff!!eeeeennnnneeeeeffffff]f	chr9:116958662-116958969(+)$1	307	128	161	12.2078
eeee####eeeeeooooooeeeee333eeeee3	chr15:99252813-99253047(+)$1	234	6	39	13.5970
d$$$$$ccc[eeeeemmmmeeeee]ccc4444d	chr7:127395659-127395906(+)$1	247	135	168	13.2186
"a[dddd####eeeeellleeeee333dddd]a	chr4:57775405-57775690(+)$1	285	194	227	14.2245
gggggg!!bb[ddddmmmmddddbb]ggggggg	chr11:85746149-85746425(-)$1	276	147	180	11.6372

#otherMatches

#Seq PSSM
GGUGCCUUCCUGGUAACUCUUACUGGGCACUGA	chr7:47325875-47326191(-)$1	316	30	63	14.5713
UUCUUAGUGUAGUUUGCUAGAUGAUUAUUAAGA	chr16:18817779-18818016(-)$1	237	194	227	11.7879
guugucauuuuuugucaucacaaauauugcuac	chr7:66232819-66233091(+)$1	272	200	233	14.6227
GUAUGCUGAUCGUGUUGUAAUGUGGCUUAGCGU	chr1:169454479-169454732(-)$1	253	181	214	10.2379
ucccguuugauuucuuccuagaucccuugguua	chr20:21299206-21299455(+)$1	249	115	148	12.9229
uguauaaugucugauuuuuguuagccuguaucc	chr1:8645949-8646207(-)$1	258	193	226	15.8095
GGGAGGAAGAGAGCUGUGAAGCUACUUCCCGGG	chr20:60637989-60638226(-)$1	237	16	49	11.0205
GCUUUGAGCCUGCCUACUUGCAGGACUCAAUCC	chrY:2717420-2717740(+)$1	320	4	37	12.1757
CUAAUCGAUGAUUCUAGAAAAGGAUGUUUGUAG	chr1:31497646-31497861(-)$1	215	73	106	12.7088
uagaguaauuuucuaauuuuaguaaauuuucua	chr4:189411023-189411278(+)$1	255	170	203	10.8846
AAAGCCCAUUUGGUGUGUGCUUGGUGUUUUUAU	chr1:27032776-27033022(+)$1	246	151	184	10.7750
AGGUCCCAUUGUGGUUGGGUCCACAGGGCCCCU	chr1:2180501-2180807(+)$1	306	153	186	11.9188
UUAGUUUCUCUAUGCAAAUGCUUUAAUGGAUGA	chr17:56069333-56069569(-)$1	236	49	82	10.7909
ucagaugcugguuguaguagcauugugcuggau	chr1:42677261-42677528(-)$1	267	92	125	11.3658
UCUGUCCUGCGCCCAGACUGGGGCUGGGGGACG	chr1:32573829-32574100(+)$1	271	201	234	11.2247
AGUAUUCCCGAGUUAAAAUUGACUUGUAAUAAG	chr14:99898035-99898339(-)$1	304	67	100	10.6594
auugaacucuccaauuauuauugaauuguuuuu	chr7:36292926-36293193(+)$1	267	225	258	12.5034
gucuccuacugcagaguucucuguuguaaggua	chr20:47901837-47902075(+)$1	238	150	183	13.8717
cagagaggaggcccuagagaggguagcuccucu	chr1:21362445-21362732(-)$1	287	219	252	14.9118
UGGAGAGGUCACUUUAGGAAAGGUUUCUCUCUU	chr8:119060303-119060566(-)$1	263	95	128	15.7739
UUAUUAGAUGCUCAUCAAACAUGAGGCCACUAC	chr16:89500977-89501234(-)$1	257	42	75	13.9016
ucucagauuuggauauauauguuggauuugaga	chr2:61499541-61499803(-)$1	262	179	212	12.8837
ugauaugcugccggauuugguuugccaguauuu	chr7:138172278-138172511(+)$1	233	188	221	12.7073
ACUGCAUUUGCUGGCAGUGAGCCAGGGGGUGGG	chr5:6721602-6721863(+)$1	261	124	157	11.7886
UGCUCCUUAGUGUCUCAUCGGGCAGUGAGAGGG	chr16:81483589-81483847(+)$1	258	77	110	11.0043
AGACUUGACUGAGGCCGCAGCCuguguuaagau	chr6:3318880-3319119(-)$1	239	146	179	11.9452
gcagaauaaaacagaagucuuuguccuuguuuc	chr11:3009585-3009843(-)$1	258	141	174	12.8084
GCGCGGUCAUGUGGUUCUGGCCACCCUACCCUC	chr18:55922492-55922764(+)$1	272	124	157	16.2014
guacugugugcagguggguucugguggcaguga	chr5:38865961-38866207(+)$1	246	68	101	11.4786
CGGCUAUUGGUAGACACCUGUCUGCUUGGGGCA	chr2:236599221-236599490(+)$1	269	130	163	11.7606
GCCCAAGGUGGGGCUCAUCUGCCUCCCAUUGGG	chr17:63550820-63551051(-)$1	231	160	193	11.2604
guauggcuagcugguugucucagcaccauuuau	chr8:141695172-141695421(-)$1	249	130	163	12.3907
GCGGAGCUGACUUGAUGGUUCGAGACUGUUCCC	chr22:47465815-47466061(+)$1	246	183	216	14.7304
cagcaguuuugcucuggagggagcagguugcca	chr6:143499056-143499318(+)$1	262	20	53	10.6065
uggaagaguuugaaaaagauuuucagucuuuca	chr19:28279743-28280096(-)$1	353	219	252	11.4947
UCCAUCAGGGAGUUUUAGAAGCUCCUGGUGAAA	chr16:152004-152256(-)$1	252	48	81	11.5789
guguguguCCUGGGAGAGUGCGCAGGAGGCGAG	chr10:80980852-80981107(+)$1	255	190	223	10.8892
gcaccgguguggcugcccucggucccuccgucu	chr14:105899514-105899803(+)$1	289	147	180	15.7919
GCAGCAGAGCCCCCGACCACGGGGAGCUGAGUU	chr18:77701152-77701379(-)$1	227	156	189	14.0206
UGCAUAGCUCUCAGACCUGUCUGUGGAGUGUGG	chr6:160522235-160522507(+)$1	272	156	189	10.9779
GGCCUGAACUGACUAGAAUUGGUAAAGAUUGGG	chr16:23132578-23132844(-)$1	266	23	56	11.7052
GGGUUGUCUAGGACGGGGCCGUCUAGGAGAAGC	chr8:141141587-141141831(-)$1	244	111	144	13.2504
CAUGCAAUUCCAUGUAgugacgugauuccgugu	chr21:46838995-46839293(+)$1	298	77	110	14.1869
ugugcggcggcaucuccuugagguuuaaguugc	chr1:2191508-2191812(+)$1	304	142	175	14.8332
CAAUGAACCUGUGCCUGCUGGGCUAAGACAGGA	chr3:43353161-43353415(+)$1	254	13	46	11.3781
ugucagauuuuccgguuucucugguuuuucuca	chr7:130770433-130770696(-)$1	263	117	150	11.9163
gguguaucuguaggaagauccuaagaaauuucu	chr17:74338025-74338335(-)$1	310	113	146	11.6773
uuggaauaagugguauAUGUACUAGGAUUUCUA	chr2:32584253-32584567(+)$1	314	39	72	15.3786
gacuuugcuggaucauagggugauguuaaagug	chr12:108935950-108936264(-)$1	314	98	131	13.8671
guggacccuggggucaguuggaccuggguccua	chr9:116958662-116958969(+)$1	307	128	161	12.2078
AUUUAAAAAUUUUAUCUGAAAAGUAAAAGGUGU	chr15:99252813-99253047(+)$1	234	6	39	13.5970
CUCCCUGUAGGAUAAUGAAUUGUCAUGCCUCUG	chr7:127395659-127395906(+)$1	247	135	168	13.2186
UCGUUAAAAUUCCAUUUGGGGUGGCAGUUAGGG	chr4:57775405-57775690(+)$1	285	194	227	14.2245
CUGGUGGGAGAGUUUGUAAAGGCCUACACUAGG	chr11:85746149-85746425(-)$1	276	147	180	11.6372

#DB
(((((((....(((((...)))))))))))).)	chr7:47325875-47326191(-)$1	1	30	63	14.5713
(.(((((((..((((...))))...))))))))	chr16:18817779-18818016(-)$1	1	194	227	11.7879
((.(.((...(((((....)))))...))).))	chr7:66232819-66233091(+)$1	1	200	233	14.6227
(((((((((((((((....)))))).)))))))	chr1:169454479-169454732(-)$1	1	181	214	10.2379
..(((...(((((......)))))...))))))	chr20:21299206-21299455(+)$1	1	115	148	12.9229
((.(((..(.(((((....))))).)..))).)	chr1:8645949-8646207(-)$1	1	193	226	15.8095
((((((.....((((....)))).)))))))))	chr20:60637989-60638226(-)$1	1	16	49	11.0205
(..((((((((((......))))).))))).))	chrY:2717420-2717740(+)$1	1	4	37	12.1757
(((..(((..(((((.....)))))..))))))	chr1:31497646-31497861(-)$1	1	73	106	12.7088
(((((.(((((.(((....))).))))))))))	chr4:189411023-189411278(+)$1	1	170	203	10.8846
((((((((...(((....)))))).))))))).	chr1:27032776-27033022(+)$1	1	151	184	10.7750
.(((((...(((((......))))))))))(((	chr1:2180501-2180807(+)$1	1	153	186	11.9188
(((((((((((((((....))....))))).))	chr17:56069333-56069569(-)$1	1	49	82	10.7909
(((.(((((((((((....)))....))))).)	chr1:42677261-42677528(-)$1	1	92	125	11.3658
.(((((((.(((((......)))).).))))))	chr1:32573829-32574100(+)$1	1	201	234	11.2247
..((((..(((((((....))))))).)))).)	chr14:99898035-99898339(-)$1	1	67	100	10.6594
(..((((....((((....))))....))))..	chr7:36292926-36293193(+)$1	1	225	258	12.5034
(((((((((.(((((....))))).)).))).)	chr20:47901837-47902075(+)$1	1	150	183	13.8717
)((((((((((((((....)))))..)))))))	chr1:21362445-21362732(-)$1	1	219	252	14.9118
.(((((((..(((((....))))).))))))).	chr8:119060303-119060566(-)$1	1	95	128	15.7739
((..(((...(((((.....)))))....))).	chr16:89500977-89501234(-)$1	1	42	75	13.9016
(((((((((..((((....)))).)))))))))	chr2:61499541-61499803(-)$1	1	179	212	12.8837
(((.((((((.(((((...))))).)))))).)	chr7:138172278-138172511(+)$1	1	188	221	12.7073
(((.(.....(((((.....)))))).)))).)	chr5:6721602-6721863(+)$1	1	124	157	11.7886
(((((((((.(((((....))))).)))).)))	chr16:81483589-81483847(+)$1	1	77	110	11.0043
...((((((..((((....))))..)))))).)	chr6:3318880-3319119(-)$1	1	146	179	11.9452
((((((..(((((((....)))))..))..)))	chr11:3009585-3009843(-)$1	1	141	174	12.8084
(.(.(((...(((((....)))))...)))).)	chr18:55922492-55922764(+)$1	1	124	157	16.2014
.((((((...((((.....))))...)))))).	chr5:38865961-38866207(+)$1	1	68	101	11.4786
(.(((...(((((((....)))))))...))).	chr2:236599221-236599490(+)$1	1	130	163	11.7606
((((((((.(((((......))))))).)))))	chr17:63550820-63551051(-)$1	1	160	193	11.2604
..((((...(((((.....))))).))))))).	chr8:141695172-141695421(-)$1	1	130	163	12.3907
(((((((.(.(((((....))))).).))))).	chr22:47465815-47466061(+)$1	1	183	216	14.7304
((((....(((((((....))))))))))))))	chr6:143499056-143499318(+)$1	1	20	53	10.6065
(((((((..(((((((...))))))))))))))	chr19:28279743-28280096(-)$1	1	219	252	11.4947
..(((((((.(((((...))))))))))))(((	chr16:152004-152256(-)$1	1	48	81	11.5789
((.(((.(((((.(......).))))).))).)	chr10:80980852-80981107(+)$1	1	190	223	10.8892
(...(((.(.(((((....))))).).))).))	chr14:105899514-105899803(+)$1	1	147	180	15.7919
(((((..((((((((....))))).)))..)..	chr18:77701152-77701379(-)$1	1	156	189	14.0206
(((...(((((((((....)))).)))))...)	chr6:160522235-160522507(+)$1	1	156	189	10.9779
(((((((.((.((((....))))..)).)))))	chr16:23132578-23132844(-)$1	1	23	56	11.7052
.(.((.(((.(((((....))))).))).)).)	chr8:141141587-141141831(-)$1	1	111	144	13.2504
((((.(((..(((((....)))))))).)))))	chr21:46838995-46839293(+)$1	1	77	110	14.1869
.(((((((...(((((...)))))....)))))	chr1:2191508-2191812(+)$1	1	142	175	14.8332
((.((..(((((((((...))))....))))).	chr3:43353161-43353415(+)$1	1	13	46	11.3781
(...(((....((((.....))))....)))..	chr7:130770433-130770696(-)$1	1	117	150	11.9163
((.((.(((.(((((...)))))))).)).)))	chr17:74338025-74338335(-)$1	1	113	146	11.6773
((((((....(((((....)))))....)))))	chr2:32584253-32584567(+)$1	1	39	72	15.3786
.((((((..(.(((((...))))).))))))).	chr12:108935950-108936264(-)$1	1	98	131	13.8671
((((((((..(((((.....))))))))))).)	chr9:116958662-116958969(+)$1	1	128	161	12.2078
((((....(((((......)))))...))))).	chr15:99252813-99253047(+)$1	1	6	39	13.5970
(.....(((.(((((....))))).)))....)	chr7:127395659-127395906(+)$1	1	135	168	13.2186
.(.((((....(((((...)))))...)))).)	chr4:57775405-57775690(+)$1	1	194	227	14.2245
((((((..((.((((....)))))).)))))))	chr11:85746149-85746425(-)$1	1	147	180	11.6372

#PSSM
f : 0.14	d : 0.12	e : 0.12	c : 0.11	g : 0.09	i : 0.07	: : 0.07	" : 0.07	b : 0.03	! : 0.03	+ : 0.01	# : 0.01	J : 0.01	= : 0.01	[ : 0.01	
f : 0.18	g : 0.12	d : 0.11	e : 0.11	i : 0.09	c : 0.07	" : 0.07	[ : 0.05	! : 0.03	a : 0.03	+ : 0.01	# : 0.01	= : 0.01	: : 0.01	$ : 0.01	
g : 0.18	f : 0.14	[ : 0.12	e : 0.11	d : 0.11	i : 0.09	c : 0.05	! : 0.05	" : 0.05	a : 0.01	= : 0.01	$ : 0.01	
g : 0.18	f : 0.14	e : 0.12	i : 0.09	d : 0.09	c : 0.07	[ : 0.07	" : 0.05	b : 0.05	! : 0.03	a : 0.01	= : 0.01	$ : 0.01	
g : 0.18	c : 0.18	f : 0.16	d : 0.09	i : 0.07	e : 0.05	b : 0.05	[ : 0.03	a : 0.03	# : 0.03	! : 0.01	= : 0.01	" : 0.01	$ : 0.01	
c : 0.20	g : 0.16	f : 0.16	d : 0.09	" : 0.05	e : 0.05	[ : 0.05	i : 0.05	$ : 0.03	# : 0.03	! : 0.03	b : 0.01	= : 0.01	
c : 0.22	g : 0.14	! : 0.11	f : 0.09	" : 0.07	e : 0.07	i : 0.05	d : 0.05	# : 0.05	b : 0.03	$ : 0.03	= : 0.01	[ : 0.01	
" : 0.14	# : 0.12	c : 0.12	g : 0.11	! : 0.11	e : 0.11	i : 0.05	f : 0.05	[ : 0.05	$ : 0.03	b : 0.03	d : 0.01	
e : 0.16	" : 0.14	g : 0.11	! : 0.11	# : 0.09	b : 0.07	c : 0.07	a : 0.05	$ : 0.03	[ : 0.03	i : 0.03	f : 0.03	d : 0.01	
e : 0.22	[ : 0.16	! : 0.12	" : 0.11	# : 0.09	g : 0.07	b : 0.05	f : 0.03	$ : 0.03	a : 0.03	i : 0.01	c : 0.01	
e : 0.61	# : 0.07	g : 0.07	[ : 0.07	! : 0.05	" : 0.03	d : 0.03	f : 0.01	$ : 0.01	
e : 0.66	d : 0.20	g : 0.07	f : 0.01	[ : 0.01	c : 0.01	
e : 0.61	d : 0.22	g : 0.07	c : 0.05	f : 0.01	[ : 0.01	
e : 0.53	d : 0.22	g : 0.07	o : 0.05	c : 0.05	f : 0.01	b : 0.01	a : 0.01	
e : 0.48	d : 0.18	o : 0.12	g : 0.07	c : 0.03	n : 0.03	f : 0.01	m : 0.01	b : 0.01	
m : 0.55	o : 0.12	n : 0.12	e : 0.09	l : 0.05	g : 0.01	d : 0.01	
m : 0.55	l : 0.18	o : 0.12	n : 0.12	
m : 0.55	l : 0.18	o : 0.12	n : 0.12	
m : 0.53	l : 0.12	o : 0.12	n : 0.12	e : 0.03	d : 0.01	c : 0.01	
e : 0.48	d : 0.18	n : 0.09	o : 0.07	g : 0.07	c : 0.05	f : 0.01	b : 0.01	
e : 0.59	d : 0.22	g : 0.07	c : 0.05	f : 0.01	b : 0.01	a : 0.01	
e : 0.59	d : 0.22	g : 0.07	c : 0.05	f : 0.01	4 : 0.01	] : 0.01	
e : 0.61	d : 0.20	g : 0.07	4 : 0.03	3 : 0.01	f : 0.01	] : 0.01	c : 0.01	
e : 0.59	g : 0.09	4 : 0.07	] : 0.05	3 : 0.03	c : 0.03	d : 0.03	2 : 0.03	f : 0.01	b : 0.01	
] : 0.27	e : 0.16	3 : 0.12	4 : 0.12	g : 0.11	2 : 0.07	f : 0.03	c : 0.03	i : 0.01	b : 0.01	
g : 0.16	4 : 0.12	3 : 0.11	a : 0.11	e : 0.11	c : 0.09	f : 0.07	2 : 0.05	b : 0.05	] : 0.03	d : 0.03	i : 0.01	
e : 0.14	g : 0.12	3 : 0.11	f : 0.11	] : 0.11	4 : 0.11	b : 0.07	c : 0.07	2 : 0.03	i : 0.03	d : 0.03	= : 0.01	
e : 0.18	g : 0.14	c : 0.12	f : 0.11	d : 0.11	] : 0.09	4 : 0.07	b : 0.05	i : 0.03	2 : 0.01	3 : 0.01	= : 0.01	
g : 0.18	e : 0.18	c : 0.14	f : 0.14	d : 0.11	i : 0.05	b : 0.03	4 : 0.03	2 : 0.03	3 : 0.01	= : 0.01	] : 0.01	
c : 0.20	g : 0.18	e : 0.16	f : 0.14	d : 0.07	i : 0.05	] : 0.03	2 : 0.03	a : 0.01	= : 0.01	3 : 0.01	b : 0.01	4 : 0.01	
g : 0.18	f : 0.16	c : 0.14	e : 0.14	d : 0.09	] : 0.07	i : 0.07	a : 0.03	= : 0.01	3 : 0.01	b : 0.01	4 : 0.01	
] : 0.24	g : 0.18	e : 0.11	f : 0.11	i : 0.09	c : 0.09	d : 0.05	2 : 0.05	= : 0.01	3 : 0.01	4 : 0.01	
2 : 0.14	d : 0.12	g : 0.12	i : 0.09	c : 0.09	f : 0.09	a : 0.07	e : 0.07	] : 0.03	b : 0.03	3 : 0.03	h : 0.01	4 : 0.01	= : 0.01	

#score	683.8393337731665
#seq	54
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_transcript_m2_run1.txt

#BEAR
ccccccqqqqqqqqccc]ccc	chr18:9940857-9941144(+)$1	287	234	255	14.8952
ffffffqqqqqqqqffffff]	chr11:109964092-109964392(+)$1	300	158	179	13.4805
ddddbbqqqqqqqqbb]dddd	chr7:26239011-26239256(-)$1	245	127	148	15.2573
[eeeeeqqqqqqqqeeeee]a	chr16:31198475-31198748(+)$1	273	55	76	14.0401
ccc[bbqqqqqqqqbb]ccc:	chr7:2677443-2677686(+)$1	243	171	192	15.0639
ee!!bbqqqqqqqqbb22eee	chr17:70556493-70556743(-)$1	250	29	50	15.9141
[eeeeeqqqqqqqqeeeee]d	chr11:65194857-65195083(+)$1	226	138	159	14.0283
h[ddddqqqqqqqqdddd]hh	chr1:17985488-17985785(+)$1	297	119	140	13.2606
!eeeeeqqqqqqqqeeeee]f	chr14:54422755-54423049(-)$1	294	232	253	13.9566
ggggggqqqqqqqqggggggg	chr11:70675973-70676245(-)$1	272	46	67	14.6382
cbbcccqqqqqqqqccc]bb]	chr11:65195881-65196125(+)$1	244	28	49	13.7055
ddd[bbqqqqqqqqbb]dddd	chr19:879193-879456(-)$1	263	103	124	15.7155
======qqqqqqqq=======	chr16:87887526-87887770(-)$1	244	92	113	15.1521
Eeeeeeqqqqqqqqeeeeeee	chr3:65534819-65535104(-)$1	285	182	203	12.9249
::a[bbqqqqqqqqbb]accc	chr17:70484128-70484388(-)$1	260	92	113	14.0660
eeeebbqqqqqqqqbb]eeee	chr8:142419395-142419657(+)$1	262	5	26	15.5623
dd[cccqqqqqqqqcccdddd	chr11:65201842-65202086(+)$1	244	60	81	14.5633
ccc[bbqqqqqqqqbb22ccc	chr16:88561623-88561863(+)$1	240	92	113	15.8913
ggggggqqqqqqqqggggggg	chr11:65203510-65203744(+)$1	234	87	108	14.6382
ccccccqqqqqqqqccc]ccc	chr2:129060026-129060280(-)$1	254	209	230	14.8952
ggggggqqqqqqqqggggggg	chr2:235883678-235883972(+)$1	294	66	87	14.6382
hh!!bbqqqqqqqqbb333hh	chr11:65195550-65195794(+)$1	244	137	158	15.9562
ggggggqqqqqqqqggggggg	chr11:65203463-65203699(+)$1	236	134	155	14.6382
ba!!bbqqqqqqqqbb22a]b	chr16:81598488-81598749(+)$1	261	38	59	15.5715
ffffffqqqqqqqqffffff2	chr16:85651888-85652160(+)$1	272	26	47	13.2937
ddd!!aqqqqqqqqa22dddd	chr17:7476261-7476549(+)$1	288	217	238	14.4163
!eeeeeqqqqqqqqeeeee22	chr21:47562996-47563254(-)$1	258	151	172	13.7392
dd[cccqqqqqqqqccc]ddd	chr17:77964151-77964411(-)$1	260	217	238	14.7879
ddd[bbqqqqqqqqbb]dddd	chr11:65211546-65211750(+)$1	204	11	32	15.7155
+eeeeeqqqqqqqqeeeee33	chr16:75283280-75283526(-)$1	246	103	124	13.3755
b!!cccqqqqqqqqccc22bb	chr11:65194915-65195130(+)$1	215	128	149	14.0703
iiiiiiqqqqqqqqiiiiiii	chr7:131012963-131013205(+)$1	242	114	135	14.7134
!eeeeeqqqqqqqqeeeee22	chr16:81581138-81581396(+)$1	258	39	60	13.7392
ffffffqqqqqqqqfffffff	chr17:75439278-75439540(+)$1	262	201	222	13.3620
ffffffqqqqqqqqffffffe	chr7:47498254-47498507(-)$1	253	158	179	13.4692
cc[cccqqqqqqqqccc333c	chr11:65194981-65195216(+)$1	235	62	83	15.3527
f"""bbqqqqqqqqbb333ff	chr17:70479458-70479704(-)$1	246	153	174	15.9020
ggg[bbqqqqqqqqbbggggg	chr2:236434807-236435061(+)$1	254	147	168	15.9314
ddd[bbqqqqqqqqbb]dddd	chr11:65211550-65211764(+)$1	214	7	28	15.7155
ddd[bbqqqqqqqqbb]dddd	chr11:65211539-65211746(+)$1	207	18	39	15.7155
ggg!!aqqqqqqqqa22gggg	chr10:80856649-80856934(+)$1	285	247	268	14.8866
!!ddddqqqqqqqqdddd22e	chr19:878814-879096(-)$1	282	151	172	13.5628
:a[cccqqqqqqqqccc]agg	chr17:63555563-63555804(-)$1	241	26	47	14.1323
eee[bbqqqqqqqqbbeeeee	chr17:75368214-75368497(+)$1	283	15	36	15.6000
ddddbbqqqqqqqqbb]dddd	chr7:2674540-2674789(+)$1	249	218	239	15.2573
eee[bbqqqqqqqqbb]eeee	chr11:65194683-65194892(+)$1	209	13	34	15.9549
eeea[aqqqqqqqqa]a]eee	chr10:77488487-77488769(+)$1	282	180	201	14.5320
fff[bbqqqqqqqqbb]ffff	chr2:240319226-240319469(-)$1	243	183	204	15.3475
b[a!!aqqqqqqqqa4444a]	chr17:77975405-77975660(-)$1	255	54	75	14.9614
$$ddddqqqqqqqqdddd22b	chr7:100142308-100142566(+)$1	258	115	136	12.6582
dd"""aqqqqqqqqa333ddd	chr1:3468066-3468332(-)$1	266	55	76	15.1335
e[a[bbqqqqqqqqbb]a22e	chr17:63555178-63555487(-)$1	309	162	183	15.8286
cc[cccqqqqqqqqccc333c	chr11:65194907-65195115(+)$1	208	136	157	15.3527
ccc[bbqqqqqqqqbb]ccc:	chr11:65190342-65190558(+)$1	216	3	24	15.0639
ddd[bbqqqqqqqqbb]dddd	chr19:879121-879388(-)$1	267	211	232	15.7155
$a!!bbqqqqqqqqbb22a33	chr2:153298414-153298691(+)$1	277	216	237	15.8394
iiii[aqqqqqqqqaiiiiii	chr21:38445871-38446130(+)$1	259	73	94	14.9194
hh!!bbqqqqqqqqbb333hh	chr11:65195501-65195715(+)$1	214	186	207	15.9562
[bb[bbqqqqqqqqbbbbeee	chr8:142425029-142425289(+)$1	260	201	222	14.4924
[a!!bbqqqqqqqqbb4444a	chr2:235867278-235867518(+)$1	240	34	55	16.1707
ggggggqqqqqqqqggggggg	chr11:18034145-18034393(-)$1	248	67	88	14.6382
a[acccqqqqqqqqccc]a]a	chr17:75316236-75316506(+)$1	270	179	200	14.9585
ee[cccqqqqqqqqccc]eee	chr2:200323329-200323580(-)$1	251	220	241	14.9517
ccddddqqqqqqqqdddd]cc	chr16:31198262-31198556(+)$1	294	23	44	13.6526

#otherMatches

#Seq PSSM
gguaaagaaauauauuuaacC	chr18:9940857-9941144(+)$1	287	234	255	14.8952
ggcgccaggcggagggcgccg	chr11:109964092-109964392(+)$1	300	158	179	13.4805
CCUUUAUAGAUGAUUACGAGG	chr7:26239011-26239256(-)$1	245	127	148	15.2573
GGCUUGUGUGUGUGUGAGUGU	chr16:31198475-31198748(+)$1	273	55	76	14.0401
CAGUGCCCCUAGCCGUUCUGC	chr7:2677443-2677686(+)$1	243	171	192	15.0639
ACAGGUGAACACGGGCAGGUG	chr17:70556493-70556743(-)$1	250	29	50	15.9141
ACUACUGACAAACGGGUGGAG	chr11:65194857-65195083(+)$1	226	138	159	14.0283
GUGGCCAAGCACUGGGUUCCC	chr1:17985488-17985785(+)$1	297	119	140	13.2606
UCUGCGGUAGAGAGCGCAGUC	chr14:54422755-54423049(-)$1	294	232	253	13.9566
CUUCUUGGCAAAUGAGGAAGU	chr11:70675973-70676245(-)$1	272	46	67	14.6382
CCAGGGCUAACCUCUCCAUGU	chr11:65195881-65196125(+)$1	244	28	49	13.7055
CAGGGGAAGGUGAGCUGCUGG	chr19:879193-879456(-)$1	263	103	124	15.7155
CGGGGGGGUCCUGGCCUCUGU	chr16:87887526-87887770(-)$1	244	92	113	15.1521
AGCGGCUGGAACGCGCUGCAC	chr3:65534819-65535104(-)$1	285	182	203	12.9249
GGCGCCGGUGAGGAGGGGGCU	chr17:70484128-70484388(-)$1	260	92	113	14.0660
CGGGGUAGGGAUCAGCUCCUG	chr8:142419395-142419657(+)$1	262	5	26	15.5623
ugcuauuguguccuguacauu	chr11:65201842-65202086(+)$1	244	60	81	14.5633
GGACCCUGGAGUGUGGAAUCC	chr16:88561623-88561863(+)$1	240	92	113	15.8913
GGCUCUUACCUCAUAGGGUCA	chr11:65203510-65203744(+)$1	234	87	108	14.6382
AGCCCUACACCUAGAGGAGCU	chr2:129060026-129060280(-)$1	254	209	230	14.8952
CCGGGAUUGAGUAUUUCUGGU	chr2:235883678-235883972(+)$1	294	66	87	14.6382
GCAAAUUAAAAGUUAUGGGGC	chr11:65195550-65195794(+)$1	244	137	158	15.9562
GGCUCUUACCUCAUAGGGUCA	chr11:65203463-65203699(+)$1	236	134	155	14.6382
CCGGGCGACUGUAUGCAGGUG	chr16:81598488-81598749(+)$1	261	38	59	15.5715
gcccucuggcaguugagggug	chr16:85651888-85652160(+)$1	272	26	47	13.2937
CCUGGCGUGGGAAAGAAAGGU	chr17:7476261-7476549(+)$1	288	217	238	14.4163
CCUUACAAGGCUGGGUGAGAA	chr21:47562996-47563254(-)$1	258	151	172	13.7392
CCAGGCUCACCUCUGCCCGGG	chr17:77964151-77964411(-)$1	260	217	238	14.7879
UUUGGAGGCUGAAGUUGAAGC	chr11:65211546-65211750(+)$1	204	11	32	15.7155
CUCCAGCAAAGACACUGGGCA	chr16:75283280-75283526(-)$1	246	103	124	13.3755
ACCUAGUAAACCUUCUGUCUG	chr11:65194915-65195130(+)$1	215	128	149	14.0703
CUCUGGGGCAGGAAUCGGAGU	chr7:131012963-131013205(+)$1	242	114	135	14.7134
GGCAAAAGCGAGGGUUUGCAG	chr16:81581138-81581396(+)$1	258	39	60	13.7392
AAAAGUAAGGUCACACUUUUA	chr17:75439278-75439540(+)$1	262	201	222	13.3620
CAGGCUCCUCAGAUGGCCUGG	chr7:47498254-47498507(-)$1	253	158	179	13.4692
ACCUAGUAAACCUUCUGUCUG	chr11:65194981-65195216(+)$1	235	62	83	15.3527
AAAAGUGUUUGCGAAUGAAUG	chr17:70479458-70479704(-)$1	246	153	174	15.9020
UUCUCUUGAUUGACAGGAACC	chr2:236434807-236435061(+)$1	254	147	168	15.9314
UUUGGAGGCUGAAGUUGAAGC	chr11:65211550-65211764(+)$1	214	7	28	15.7155
UUUGGAGGCUGAAGUUGAAGC	chr11:65211539-65211746(+)$1	207	18	39	15.7155
AUGGGCUCAGGUGUGGACAUG	chr10:80856649-80856934(+)$1	285	247	268	14.8866
ggggccggggccggggccggg	chr19:878814-879096(-)$1	282	151	172	13.5628
UGGCACAGGCAGUAGUGGCGU	chr17:63555563-63555804(-)$1	241	26	47	14.1323
AUGCUGUGAAUUCUCACAUGG	chr17:75368214-75368497(+)$1	283	15	36	15.6000
CAGGAGGCCUGAGACUCCCUG	chr7:2674540-2674789(+)$1	249	218	239	15.2573
UUACAGGAGACAAACUUUGGG	chr11:65194683-65194892(+)$1	209	13	34	15.9549
gagccccucucaucgugucuc	chr10:77488487-77488769(+)$1	282	180	201	14.5320
CCUACUCACUUCCUAGAAGGA	chr2:240319226-240319469(-)$1	243	183	204	15.3475
agcagggaagggggcaagggg	chr17:77975405-77975660(-)$1	255	54	75	14.9614
GAGCCUAAAGGGAAGGGCGGC	chr7:100142308-100142566(+)$1	258	115	136	12.6582
GCAGUGUGGUGUGUCUGGGCA	chr1:3468066-3468332(-)$1	266	55	76	15.1335
AGUGGGGAAAUAUACCGAAAU	chr17:63555178-63555487(-)$1	309	162	183	15.8286
ACCUAGUAAACCUUCUGUCUG	chr11:65194907-65195115(+)$1	208	136	157	15.3527
CAGACAGGGAGAGAUGACUGA	chr11:65190342-65190558(+)$1	216	3	24	15.0639
CAGGGGAAGGCGAGCUgcugg	chr19:879121-879388(-)$1	267	211	232	15.7155
AGGGAGGAAAUGGACUAACAU	chr2:153298414-153298691(+)$1	277	216	237	15.8394
AGGGUGUGAGUAGUCCCUUUG	chr21:38445871-38446130(+)$1	259	73	94	14.9194
GCAAAUUAAAAGUUAUGGGGC	chr11:65195501-65195715(+)$1	214	186	207	15.9562
ACCUGGGAGUGAAGCCGGGGC	chr8:142425029-142425289(+)$1	260	201	222	14.4924
GAAGUCAAGGAGGAGAAAGAU	chr2:235867278-235867518(+)$1	240	34	55	16.1707
CGGGGAAGGAAGGGUCUUCGC	chr11:18034145-18034393(-)$1	248	67	88	14.6382
GGGACCGGAUCUCAGGUACGC	chr17:75316236-75316506(+)$1	270	179	200	14.9585
AGACGCGGCACCCAGCGACUG	chr2:200323329-200323580(-)$1	251	220	241	14.9517
GGGGUAGGGUAGAAUGCCACC	chr16:31198262-31198556(+)$1	294	23	44	13.6526

#DB
((((((........))).)))	chr18:9940857-9941144(+)$1	1	234	255	14.8952
((((((........)))))).	chr11:109964092-109964392(+)$1	1	158	179	13.4805
((((((........)).))))	chr7:26239011-26239256(-)$1	1	127	148	15.2573
.(((((........))))).)	chr16:31198475-31198748(+)$1	1	55	76	14.0401
(((.((........)).))).	chr7:2677443-2677686(+)$1	1	171	192	15.0639
((..((........))..)))	chr17:70556493-70556743(-)$1	1	29	50	15.9141
.(((((........))))).)	chr11:65194857-65195083(+)$1	1	138	159	14.0283
(.((((........)))).))	chr1:17985488-17985785(+)$1	1	119	140	13.2606
.(((((........))))).)	chr14:54422755-54423049(-)$1	1	232	253	13.9566
((((((........)))))))	chr11:70675973-70676245(-)$1	1	46	67	14.6382
((((((........))).)).	chr11:65195881-65196125(+)$1	1	28	49	13.7055
(((.((........)).))))	chr19:879193-879456(-)$1	1	103	124	15.7155
((((((........)))))))	chr16:87887526-87887770(-)$1	1	92	113	15.1521
((((((........)))))((	chr3:65534819-65535104(-)$1	1	182	203	12.9249
..(.((........)).)(((	chr17:70484128-70484388(-)$1	1	92	113	14.0660
((((((........)).))))	chr8:142419395-142419657(+)$1	1	5	26	15.5623
((.(((........)))))))	chr11:65201842-65202086(+)$1	1	60	81	14.5633
(((.((........))..)))	chr16:88561623-88561863(+)$1	1	92	113	15.8913
((((((........)))))))	chr11:65203510-65203744(+)$1	1	87	108	14.6382
((((((........))).)))	chr2:129060026-129060280(-)$1	1	209	230	14.8952
((((((........)))))))	chr2:235883678-235883972(+)$1	1	66	87	14.6382
((..((........))...))	chr11:65195550-65195794(+)$1	1	137	158	15.9562
((((((........)))))))	chr11:65203463-65203699(+)$1	1	134	155	14.6382
((..((........))..).)	chr16:81598488-81598749(+)$1	1	38	59	15.5715
((((((........)))))).	chr16:85651888-85652160(+)$1	1	26	47	13.2937
(((..(........)..))))	chr17:7476261-7476549(+)$1	1	217	238	14.4163
.(((((........)))))..	chr21:47562996-47563254(-)$1	1	151	172	13.7392
((.(((........))).)))	chr17:77964151-77964411(-)$1	1	217	238	14.7879
(((.((........)).))))	chr11:65211546-65211750(+)$1	1	11	32	15.7155
.(((((........)))))..	chr16:75283280-75283526(-)$1	1	103	124	13.3755
(..(((........)))..))	chr11:65194915-65195130(+)$1	1	128	149	14.0703
((((((........)))))))	chr7:131012963-131013205(+)$1	1	114	135	14.7134
.(((((........)))))..	chr16:81581138-81581396(+)$1	1	39	60	13.7392
((((((........)))))))	chr17:75439278-75439540(+)$1	1	201	222	13.3620
((((((........)))))))	chr7:47498254-47498507(-)$1	1	158	179	13.4692
((.(((........)))...)	chr11:65194981-65195216(+)$1	1	62	83	15.3527
(...((........))...))	chr17:70479458-70479704(-)$1	1	153	174	15.9020
(((.((........)))))))	chr2:236434807-236435061(+)$1	1	147	168	15.9314
(((.((........)).))))	chr11:65211550-65211764(+)$1	1	7	28	15.7155
(((.((........)).))))	chr11:65211539-65211746(+)$1	1	18	39	15.7155
(((..(........)..))))	chr10:80856649-80856934(+)$1	1	247	268	14.8866
..((((........))))..)	chr19:878814-879096(-)$1	1	151	172	13.5628
.(.(((........))).)((	chr17:63555563-63555804(-)$1	1	26	47	14.1323
(((.((........)))))))	chr17:75368214-75368497(+)$1	1	15	36	15.6000
((((((........)).))))	chr7:2674540-2674789(+)$1	1	218	239	15.2573
(((.((........)).))))	chr11:65194683-65194892(+)$1	1	13	34	15.9549
((((.(........).).)))	chr10:77488487-77488769(+)$1	1	180	201	14.5320
(((.((........)).))))	chr2:240319226-240319469(-)$1	1	183	204	15.3475
(.(..(........)....).	chr17:77975405-77975660(-)$1	1	54	75	14.9614
..((((........))))..)	chr7:100142308-100142566(+)$1	1	115	136	12.6582
((...(........)...)))	chr1:3468066-3468332(-)$1	1	55	76	15.1335
(.(.((........)).)..)	chr17:63555178-63555487(-)$1	1	162	183	15.8286
((.(((........)))...)	chr11:65194907-65195115(+)$1	1	136	157	15.3527
(((.((........)).))).	chr11:65190342-65190558(+)$1	1	3	24	15.0639
(((.((........)).))))	chr19:879121-879388(-)$1	1	211	232	15.7155
.(..((........))..)..	chr2:153298414-153298691(+)$1	1	216	237	15.8394
((((.(........)))))))	chr21:38445871-38446130(+)$1	1	73	94	14.9194
((..((........))...))	chr11:65195501-65195715(+)$1	1	186	207	15.9562
.((.((........)))))))	chr8:142425029-142425289(+)$1	1	201	222	14.4924
.(..((........))....)	chr2:235867278-235867518(+)$1	1	34	55	16.1707
((((((........)))))))	chr11:18034145-18034393(-)$1	1	67	88	14.6382
(.((((........))).).)	chr17:75316236-75316506(+)$1	1	179	200	14.9585
((.(((........))).)))	chr2:200323329-200323580(-)$1	1	220	241	14.9517
((((((........)))).))	chr16:31198262-31198556(+)$1	1	23	44	13.6526

#PSSM
d : 0.17	c : 0.14	e : 0.10	g : 0.10	f : 0.09	[ : 0.06	! : 0.06	h : 0.04	b : 0.04	: : 0.03	i : 0.03	$ : 0.03	= : 0.01	E : 0.01	+ : 0.01	a : 0.01	
e : 0.20	d : 0.17	c : 0.12	g : 0.10	f : 0.07	[ : 0.06	a : 0.06	b : 0.03	h : 0.03	! : 0.03	i : 0.03	= : 0.01	: : 0.01	" : 0.01	$ : 0.01	
d : 0.18	e : 0.17	! : 0.10	g : 0.10	[ : 0.09	c : 0.07	f : 0.07	a : 0.06	b : 0.03	i : 0.03	" : 0.03	= : 0.01	
[ : 0.23	c : 0.17	! : 0.14	e : 0.12	d : 0.09	g : 0.07	f : 0.06	i : 0.03	" : 0.03	= : 0.01	a : 0.01	
b : 0.39	c : 0.17	e : 0.10	g : 0.07	f : 0.06	d : 0.06	! : 0.04	[ : 0.03	= : 0.01	i : 0.01	" : 0.01	
b : 0.39	c : 0.17	e : 0.10	a : 0.09	g : 0.07	f : 0.06	d : 0.06	= : 0.01	i : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
b : 0.39	c : 0.17	e : 0.10	a : 0.09	g : 0.07	f : 0.06	d : 0.06	= : 0.01	i : 0.01	
b : 0.39	c : 0.17	e : 0.10	g : 0.07	f : 0.06	d : 0.06	2 : 0.03	i : 0.03	= : 0.01	] : 0.01	4 : 0.01	3 : 0.01	
] : 0.21	c : 0.17	e : 0.12	2 : 0.09	g : 0.09	f : 0.06	d : 0.06	3 : 0.06	i : 0.03	4 : 0.03	= : 0.01	a : 0.01	b : 0.01	
d : 0.20	e : 0.15	] : 0.12	g : 0.10	3 : 0.09	f : 0.07	2 : 0.07	c : 0.03	a : 0.03	i : 0.03	4 : 0.03	= : 0.01	b : 0.01	
e : 0.21	d : 0.17	g : 0.10	c : 0.09	f : 0.07	3 : 0.07	a : 0.06	2 : 0.06	] : 0.03	i : 0.03	4 : 0.03	b : 0.01	= : 0.01	
d : 0.17	e : 0.12	g : 0.12	c : 0.10	f : 0.09	] : 0.07	2 : 0.07	3 : 0.06	h : 0.04	b : 0.03	i : 0.03	= : 0.01	a : 0.01	4 : 0.01	
d : 0.18	e : 0.17	g : 0.12	c : 0.10	f : 0.06	] : 0.04	a : 0.04	h : 0.04	b : 0.04	2 : 0.04	: : 0.03	3 : 0.03	i : 0.03	= : 0.01	

#score	945.3222340032769
#seq	64
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_UTR_m1_run2.txt

#BEAR
ccc####ccc[dddd[aooooooa]dddd22ccc22ccc	chr6:34857006-34857331(+)$1	325	40	79	14.9590
bccc"""bb[a[eeeeeooooooeeeeea]bb333ccc]	chr17:7477024-7477337(+)$1	313	64	103	15.1024
c[eeeee[a$$$$$cccmmmmccc4444a]eeeee]ccc	chr10:17271172-17271430(-)$1	258	8	47	11.8735
bbgggggggdddd!!cccnnnnnccc22dddd]gggggg	chr22:50013594-50013832(-)$1	238	3	42	13.2625
ff[bbccccccbb!!bboooooobb]bb]ccc]ccc22b	chr16:88718465-88718710(-)$1	245	172	211	14.0685
:bb[eeeeeccc"""aooooooa333ccc22eeeee]bb	chr16:4736594-4736839(+)$1	245	183	222	13.0104
$$ccc[a[bb$$$$$cccnnnnnccc4444bb]a]ccc3	chr15:64752848-64753082(+)$1	234	17	56	13.4814
iiii"""dddd$$$$$bboooooobb22dddd]iiiiii	chr17:46653873-46654118(-)$1	245	155	194	14.6609
[ffffffeeeee[ccc[ammmmaccc]eeeee333ffff	chr7:140178737-140179006(-)$1	269	149	188	12.0926
iiii"""bb[ccc[cccmmmmccccccbb]iiiiiiiii	chr22:50696140-50696405(-)$1	265	106	145	12.1495
[ccc[dddd!!ffffffooooooffffff333dddd]cc	chr9:139904818-139905104(-)$1	286	26	65	13.8784
=[bb"""ggggggg[bboooooobb]ggggggg>>>>>>	chr6:31698196-31698441(-)$1	245	11	50	14.5782
###ccc[eeeee"""bboooooobb22eeeee]ccc444	chr6:29600378-29600665(-)$1	287	162	201	16.3568
ggggg[a[a!!a!!cccooooooccc22a22a]a]gggg	chr12:56632206-56632447(-)$1	241	84	123	19.0339
a"""a[bb[a####ddddllldddd333a]bb]a]a]==	chr19:50436985-50437259(+)$1	274	110	149	13.3859
bbffffffdddd!!cccooooooccc4444dddd]ffff	chr19:50168043-50168358(-)$1	315	219	258	15.7974
b[ccc[iiiiiiiii!!ccclllccc22iiiiiiiii]c	chr7:5569448-5569689(-)$1	241	145	184	13.1192
bccc####dddd"""bbnnnnnbb4444dddd333ccc]	chr1:153954337-153954619(-)$1	282	66	105	13.8588
[dddd"""dddd[eeeeeooooooeeeee]dddddddd]	chrX:133930784-133931088(-)$1	304	130	169	12.6678
ggggg!!ffffff[cccooooooccc]ffffff22gggg	chr4:1019492-1019798(+)$1	306	41	80	15.9308
dddd!!eeeee!!ddddoooooodddd333eeeeedddd	chr12:109124315-109124608(-)$1	293	211	250	14.9415
fff[ccc"""eeeee[annnnna]eeeee333ccc]fff	chr17:79878275-79878535(-)$1	260	143	182	11.8130
e!!bb####ffffff[aooooooaffffff333bbeeee	chr17:79866767-79867103(-)$1	336	55	94	13.3540
a[ccc[a[ffffff[bboooooobb22ffffffaccc]a	chr11:95522561-95522848(-)$1	287	186	225	14.9943
cccffffff!!a[a[bboooooobb]a]a22ffffff]c	chr11:1774034-1774311(-)$1	277	63	102	15.8282
cc!!ddddccc!!ddddoooooodddd22ccc]dddd]c	chr22:32021714-32021968(-)$1	254	155	194	15.2766
ggggggg[dddd[ddddoooooodddd]dddd]gggggg	chr2:97525521-97525841(-)$1	320	170	209	16.0623
===[a!!eeeeeeeeeeooooooeeeee]eeeee22a22	chr15:74701929-74702205(-)$1	276	212	251	14.2082
cccffffff[bb"""cccmmmmccc333bb]ffffff]c	chr12:113826631-113826898(+)$1	267	195	234	11.6713
d[dddd[ccc[ccc[bboooooobb]ccc]cccdddddd	chr1:26232505-26232755(-)$1	250	92	131	14.3059
ggggggiiiiiiiii[annnnna]iiiiiiiii333ggg	chr7:1577293-1577605(+)$1	312	137	176	13.6854
iiiiiiiiccc[cccbboooooobb]ccc]ccc4444ii	chr17:73775232-73775536(-)$1	304	214	253	16.4866
ddcccggggggg[ddddoooooodddd]ggggggg]ccc	chr6:33266643-33266927(-)$1	284	7	46	15.5849
ggggggg!!ccc[ddddoooooodddd]cccggggggg]	chr7:100174871-100175080(-)$1	209	49	88	16.5901
gggggccca!!eeeee[annnnnaeeeee22a]ccc333	chr5:138629678-138629929(+)$1	251	152	191	12.9605
eeeee[==========!!aooooooa]==========55	chr22:22899480-22899721(-)$1	241	32	71	13.0826
fffff[ccc$$$$$cccoooooocccccc]ffffff]gg	chr6:33266569-33266843(-)$1	274	21	60	15.8565
[ggggggg[ccc"""cccnnnnnccc22cccggggggga	chr21:47721588-47721865(-)$1	277	176	215	14.8444
hhhhhhhh!!ccc[cccooooooccc]ccc]hhhhhhhh	chr15:91446097-91446422(+)$1	325	62	101	14.2215
fccceeeee####ddddoooooodddd22eeeeeeeeee	chr11:554406-554730(+)$1	324	185	224	14.7484
g"""bb[accc####ddddllldddd333ccc]a]bb22	chr1:2122240-2122565(-)$1	325	263	302	12.6648
ggggggg[dddd!!abboooooobb]a22dddd]ggggg	chr5:154136527-154136840(+)$1	313	121	160	16.3902
eeee!!ccc####ddddoooooodddd]ccc4444eeee	chr19:12811283-12811564(-)$1	281	150	189	15.7153
f!!eeeeedddd!!cccooooooccc4444dddd00000	chr6:30881965-30882258(+)$1	293	68	107	14.6862
fffccceeeee[a[cccoooooocccaeeeee]ccc22f	chr7:102004313-102004592(+)$1	279	102	141	15.7953
eccc[abb!!gggggggooooooggggggg333bb]a]c	chr19:47778061-47778339(+)$1	278	141	180	14.9816
""eeeee!!ccc!!bboooooobbccceeeee333iiii	chr16:31501917-31502170(-)$1	253	108	147	15.1489
==========="""cccooooooccc4444=========	chr7:100171716-100171993(-)$1	277	231	270	19.2654

#otherMatches

#Seq PSSM
GGGAAAAGGCAGGGAGGGGGUGGUGUCCCCAGCCGGUUU	chr6:34857006-34857331(+)$1	325	40	79	14.9590
AUCCGGGCAACGCGAGGGGGGGGCUUCGGCUGGAGGGAG	chr17:7477024-7477337(+)$1	313	64	103	15.1024
UGGCUGCGGAGGGUGGCGAUGGCCUGGGCGGCGGCGGUG	chr10:17271172-17271430(-)$1	258	8	47	11.8735
cggcagacugagagugucacagagaccaucucaagucug	chr22:50013594-50013832(-)$1	238	3	42	13.2625
CCUCCUUGGGCCUCAGGAAACCACCAAGUGCCUCGGAUG	chr16:88718465-88718710(-)$1	245	172	211	14.0685
CGGUCCUGCAGCAGACACGUUAGGACGCUCAGCAGGUCC	chr16:4736594-4736839(+)$1	245	183	222	13.0104
gaggcgcggggagggggcagagagccagagccggagccg	chr15:64752848-64753082(+)$1	234	17	56	13.4814
CCCCACACUUUAUAUACGAAUAAACGCAGAAGAGGGGGA	chr17:46653873-46654118(-)$1	245	155	194	14.6609
GGAGGGCGGGGACCGGCGUUGUCUCGAUCUCUGCAGCCC	chr7:140178737-140179006(-)$1	269	149	188	12.0926
GGGGAGAAGCGGUAGGGAGGACCCACCCUGCCCCUGCCC	chr22:50696140-50696405(-)$1	265	106	145	12.1495
GACCAAGGUGGGCUCUGGGCAUGUAGGGUGGGGCCUGGG	chr9:139904818-139905104(-)$1	286	26	65	13.8784
UGUGGGGUGGGAUGAGUAGGACAACAUAUUUCAGUAAUA	chr6:31698196-31698441(-)$1	245	11	50	14.5782
GGAUGGAAUCGGGGAGCGCUGAGGCGGCCGAUGCCGGGA	chr6:29600378-29600665(-)$1	287	162	201	16.3568
GGGGUGGGUGGGAGGGGAGGGUGCCUGGCAGAGCAGCCC	chr12:56632206-56632447(-)$1	241	84	123	19.0339
AAGGUGUUGGAGAGGGGCUGUGUCUGGGUGAGGGAUGGC	chr19:50436985-50437259(+)$1	274	110	149	13.3859
GGCCGGUCGCGCCCAGGAAAUGCCCUAUACGCGCAGGCC	chr19:50168043-50168358(-)$1	315	219	258	15.7974
UGUUUGAACCGGGCGGAGGCGGGGCUGGCGCCCGGUUGG	chr7:5569448-5569689(-)$1	241	145	184	13.1192
CCCCGGAAGCUGAACCUGAGGGAGACAACGGCAGAGGGA	chr1:153954337-153954619(-)$1	282	66	105	13.8588
GGGCUGGACCGGGUCCCCGAGCAUGGGGAGCUGGAGCCG	chrX:133930784-133931088(-)$1	304	130	169	12.6678
GAUAUGCUGUCUGGACGCACACACGUGCAGAUAUGGUAU	chr4:1019492-1019798(+)$1	306	41	80	15.9308
UGUGUUUCCCUAAUAGCGGGGCAGCUGGCGAGGGACGCA	chr12:109124315-109124608(-)$1	293	211	250	14.9415
CCCUGUGUCUGGCCAUGUGAGCCCUGGCCUUUCACCGGG	chr17:79878275-79878535(-)$1	260	143	182	11.8130
UAAGGGCCAGGGUAGAGAGACAGCCUGCCCCCACCGGCC	chr17:79866767-79867103(-)$1	336	55	94	13.3540
GGAGGAGACUGAGGAGCAGGAUGGCGGCCUCGGCCCUGU	chr11:95522561-95522848(-)$1	287	186	225	14.9943
UCCCGGGCCCGUUGAGGAUGAGGCCGCUAGAGGCCUGAG	chr11:1774034-1774311(-)$1	277	63	102	15.8282
CUGCGCCGGCCCAUGAUGUGUCAGUCAGAGGCGCGGCAA	chr22:32021714-32021968(-)$1	254	155	194	15.2766
UCUUCCUGUACAGGGCUGGGAAAGGCUGUGUGAGGGGAG	chr2:97525521-97525841(-)$1	320	170	209	16.0623
UCCAGGACUCUGCCCUUGGCGUUGAGGGUUGGGGGGCGG	chr15:74701929-74702205(-)$1	276	212	251	14.2082
CUCCCAGCUGCAUUCCCACGGGUGGCCCUGGAGCUGGUG	chr12:113826631-113826898(+)$1	267	195	234	11.6713
GUGGGCAGGGGGCUGGGCGAUCACCGGGCGUCCGCUCCG	chr1:26232505-26232755(-)$1	250	92	131	14.3059
UCCCUGGCCCAGGGUGUGGGGAGGGUCCUGGGCUGGCAG	chr7:1577293-1577605(+)$1	312	137	176	13.6854
CCCUGGGGGGCGGCCCGGGUGAGCGCGGCGGCCUUAUCU	chr17:73775232-73775536(-)$1	304	214	253	16.4866
GAGCUGGGGACUCGGGCGCCUGGGUCCUGGUCCCUGAGC	chr6:33266643-33266927(-)$1	284	7	46	15.5849
CCCUGUCUUGGUCCCUCAGGCGGGAGGAGCCGGCAGGGG	chr7:100174871-100175080(-)$1	209	49	88	16.5901
UGUGGGCGGGGGCGGGACGACUAGCCCGUUACACGCGGG	chr5:138629678-138629929(+)$1	251	152	191	12.9605
CUGGGACUCGGCCCCUCUGAAGGUGCUGGGGGUUGGGGA	chr22:22899480-22899721(-)$1	241	32	71	13.0826
CUCCUGCUCUCGGAGCGGGCGGACGCGGGGGGGAGCGGA	chr6:33266569-33266843(-)$1	274	21	60	15.8565
UGAGGGGCCUGUGAACCCCACCAGGGCAACAGCCCCUCC	chr21:47721588-47721865(-)$1	277	176	215	14.8444
GCUCGGCCGACUGGGCCCGGAGCGGCGCGGAGGCCGGGC	chr15:91446097-91446422(+)$1	325	62	101	14.2215
UCUCCUGCUAGAAUUGGGCAUGGCCGAGGGGCAGGGGCU	chr11:554406-554730(+)$1	324	185	224	14.7484
UGGACUGGUCUGAGGGCAGAGGCUGUAGGGGAGCGAGGG	chr1:2122240-2122565(-)$1	325	263	302	12.6648
gcccgcggcgcggcccgAGUGUGCGUGUGCGCGGCGCGG	chr5:154136527-154136840(+)$1	313	121	160	16.3902
GAGUCGCCCUGUCAGCACGCACAUGCUUGGGACCCACUC	chr19:12811283-12811564(-)$1	281	150	189	15.7153
CUCCAGGGCCACGUUCCAGGGUCGGGUUUGGUGGAUUCC	chr6:30881965-30882258(+)$1	293	68	107	14.6862
UGCGGGGCUGGACGCUGACUGCCCGGGCCAGCACCUAGG	chr7:102004313-102004592(+)$1	279	102	141	15.7953
CGGCGCCGAGAGCCCCGGAGGCGCGGGGCUGAGCGAGGG	chr19:47778061-47778339(+)$1	278	141	180	14.9816
UUAGGGCAACUGCAGCGGGUGGGCCAGGCCCUCAUGGGA	chr16:31501917-31502170(-)$1	253	108	147	15.1489
ACCCUUGGCCUGCCGGCCUGGCUGCCUCUGGGGUCGAGG	chr7:100171716-100171993(-)$1	277	231	270	19.2654

#DB
(((....(((.((((.(......).))))..)))..)))	chr6:34857006-34857331(+)$1	1	40	79	14.9590
((((...((.(.(((((......)))))).))...))).	chr17:7477024-7477337(+)$1	1	64	103	15.1024
(.(((((.(.....(((....)))....).))))).)))	chr10:17271172-17271430(-)$1	1	8	47	11.8735
(((((((((((((..(((.....)))..)))).))))))	chr22:50013594-50013832(-)$1	1	3	42	13.2625
((.((((((((((..((......)).)).))).)))..)	chr16:88718465-88718710(-)$1	1	172	211	14.0685
.((.((((((((...(......)...)))..))))).))	chr16:4736594-4736839(+)$1	1	183	222	13.0104
..(((.(.((.....(((.....)))....)).).))).	chr15:64752848-64753082(+)$1	1	17	56	13.4814
((((...((((.....((......))..)))).))))))	chr17:46653873-46654118(-)$1	1	155	194	14.6609
.(((((((((((.(((.(....)))).)))))...))))	chr7:140178737-140179006(-)$1	1	149	188	12.0926
((((...((.(((.(((....)))))))).)))))))))	chr22:50696140-50696405(-)$1	1	106	145	12.1495
.(((.((((..((((((......))))))...)))).))	chr9:139904818-139905104(-)$1	1	26	65	13.8784
(.((...(((((((.((......)).)))))))......	chr6:31698196-31698441(-)$1	1	11	50	14.5782
...(((.(((((...((......))..))))).)))...	chr6:29600378-29600665(-)$1	1	162	201	16.3568
(((((.(.(..(..(((......)))..)..).).))))	chr12:56632206-56632447(-)$1	1	84	123	19.0339
(...(.((.(....((((...))))...).)).).).))	chr19:50436985-50437259(+)$1	1	110	149	13.3859
((((((((((((..(((......)))....)))).))))	chr19:50168043-50168358(-)$1	1	219	258	15.7974
(.(((.(((((((((..(((...)))..))))))))).)	chr7:5569448-5569689(-)$1	1	145	184	13.1192
((((....((((...((.....))....))))...))).	chr1:153954337-153954619(-)$1	1	66	105	13.8588
.((((...((((.(((((......))))).)))))))).	chrX:133930784-133931088(-)$1	1	130	169	12.6678
(((((..((((((.(((......))).))))))..))))	chr4:1019492-1019798(+)$1	1	41	80	15.9308
((((..(((((..((((......))))...)))))))))	chr12:109124315-109124608(-)$1	1	211	250	14.9415
(((.(((...(((((.(.....).)))))...))).)))	chr17:79878275-79878535(-)$1	1	143	182	11.8130
(..((....((((((.(......)))))))...))))))	chr17:79866767-79867103(-)$1	1	55	94	13.3540
(.(((.(.((((((.((......))..)))))))))).)	chr11:95522561-95522848(-)$1	1	186	225	14.9943
(((((((((..(.(.((......)).).)..)))))).)	chr11:1774034-1774311(-)$1	1	63	102	15.8282
((..(((((((..((((......))))..))).)))).)	chr22:32021714-32021968(-)$1	1	155	194	15.2766
(((((((.((((.((((......)))).)))).))))))	chr2:97525521-97525841(-)$1	1	170	209	16.0623
(((.(..((((((((((......))))).)))))..)..	chr15:74701929-74702205(-)$1	1	212	251	14.2082
(((((((((.((...(((....)))...)).)))))).)	chr12:113826631-113826898(+)$1	1	195	234	11.6713
(.((((.(((.(((.((......)).))).)))))))))	chr1:26232505-26232755(-)$1	1	92	131	14.3059
(((((((((((((((.(.....).)))))))))...)))	chr7:1577293-1577605(+)$1	1	137	176	13.6854
(((((((((((.(((((......)).))).)))....))	chr17:73775232-73775536(-)$1	1	214	253	16.4866
((((((((((((.((((......)))).))))))).)))	chr6:33266643-33266927(-)$1	1	7	46	15.5849
(((((((..(((.((((......)))).)))))))))).	chr7:100174871-100175080(-)$1	1	49	88	16.5901
(((((((((..(((((.(.....))))))..).)))...	chr5:138629678-138629929(+)$1	1	152	191	12.9605
(((((.((((((((((..(......).))))))))))..	chr22:22899480-22899721(-)$1	1	32	71	13.0826
(((((.(((.....(((......)))))).)))))).))	chr6:33266569-33266843(-)$1	1	21	60	15.8565
.(((((((.(((...(((.....)))..)))))))))))	chr21:47721588-47721865(-)$1	1	176	215	14.8444
((((((((..(((.(((......))).))).))))))))	chr15:91446097-91446422(+)$1	1	62	101	14.2215
))))(((((....((((......))))..)))))(((((	chr11:554406-554730(+)$1	1	185	224	14.7484
(...((.((((....((((...))))...))).).))..	chr1:2122240-2122565(-)$1	1	263	302	12.6648
(((((((.((((..(((......)).)..)))).)))))	chr5:154136527-154136840(+)$1	1	121	160	16.3902
((((..(((....((((......)))).)))....))))	chr19:12811283-12811564(-)$1	1	150	189	15.7153
(..(((((((((..(((......)))....)))).....	chr6:30881965-30882258(+)$1	1	68	107	14.6862
(((((((((((.(.(((......))))))))).)))..)	chr7:102004313-102004592(+)$1	1	102	141	15.7953
)(((.(((..(((((((......)))))))...)).).)	chr19:47778061-47778339(+)$1	1	141	180	14.9816
..(((((..(((..((......))))))))))...))))	chr16:31501917-31502170(-)$1	1	108	147	15.1489
(((((((((((...(((......)))....)))))))))	chr7:100171716-100171993(-)$1	1	231	270	19.2654

#PSSM
g : 0.16	f : 0.12	c : 0.10	b : 0.10	[ : 0.08	e : 0.08	i : 0.06	= : 0.06	d : 0.06	a : 0.04	: : 0.02	$ : 0.02	# : 0.02	h : 0.02	" : 0.02	
c : 0.18	g : 0.16	[ : 0.10	f : 0.10	b : 0.06	i : 0.06	" : 0.06	d : 0.06	! : 0.04	= : 0.04	e : 0.04	$ : 0.02	# : 0.02	h : 0.02	
c : 0.25	g : 0.18	f : 0.10	e : 0.08	i : 0.06	d : 0.06	! : 0.06	b : 0.04	" : 0.04	= : 0.04	[ : 0.02	# : 0.02	h : 0.02	
c : 0.22	g : 0.18	e : 0.10	f : 0.10	b : 0.06	[ : 0.06	i : 0.06	d : 0.06	" : 0.04	# : 0.02	! : 0.02	h : 0.02	= : 0.02	
g : 0.18	c : 0.14	e : 0.12	f : 0.10	" : 0.08	b : 0.06	d : 0.06	# : 0.04	[ : 0.04	a : 0.04	! : 0.04	i : 0.02	h : 0.02	= : 0.02	
g : 0.14	[ : 0.14	" : 0.10	e : 0.10	c : 0.10	f : 0.08	! : 0.08	# : 0.06	d : 0.06	i : 0.02	h : 0.02	b : 0.02	a : 0.02	= : 0.02	
e : 0.14	g : 0.12	" : 0.10	c : 0.10	f : 0.08	# : 0.06	a : 0.06	[ : 0.06	i : 0.06	d : 0.04	b : 0.04	! : 0.04	= : 0.04	h : 0.02	
e : 0.16	c : 0.12	[ : 0.12	b : 0.08	g : 0.08	f : 0.08	d : 0.06	i : 0.06	# : 0.04	" : 0.04	! : 0.04	= : 0.04	h : 0.02	a : 0.02	
c : 0.16	d : 0.16	e : 0.14	f : 0.08	! : 0.08	b : 0.06	a : 0.06	g : 0.06	[ : 0.04	i : 0.04	= : 0.04	" : 0.02	# : 0.02	
c : 0.20	d : 0.16	! : 0.12	e : 0.10	[ : 0.06	f : 0.06	$ : 0.04	g : 0.04	i : 0.04	= : 0.04	# : 0.04	b : 0.02	a : 0.02	" : 0.02	
c : 0.20	d : 0.16	e : 0.12	! : 0.08	$ : 0.06	g : 0.06	# : 0.06	f : 0.06	[ : 0.04	i : 0.04	= : 0.04	a : 0.02	b : 0.02	
d : 0.16	c : 0.14	e : 0.10	$ : 0.08	f : 0.08	# : 0.08	[ : 0.06	g : 0.06	b : 0.04	a : 0.04	i : 0.04	! : 0.04	= : 0.02	" : 0.02	
! : 0.14	" : 0.12	[ : 0.12	e : 0.08	$ : 0.08	c : 0.08	f : 0.08	# : 0.08	d : 0.04	g : 0.04	i : 0.04	b : 0.02	= : 0.02	a : 0.02	
d : 0.16	! : 0.14	" : 0.12	e : 0.10	$ : 0.08	[ : 0.08	c : 0.06	f : 0.06	g : 0.04	# : 0.04	i : 0.04	a : 0.02	= : 0.02	
c : 0.25	d : 0.18	e : 0.10	" : 0.10	[ : 0.08	! : 0.04	$ : 0.04	f : 0.04	i : 0.04	= : 0.02	# : 0.02	a : 0.02	g : 0.02	b : 0.02	
c : 0.31	b : 0.20	d : 0.18	[ : 0.08	e : 0.08	a : 0.02	$ : 0.02	f : 0.02	! : 0.02	= : 0.02	g : 0.02	
c : 0.29	b : 0.20	d : 0.18	a : 0.08	e : 0.06	o : 0.04	[ : 0.04	! : 0.04	f : 0.02	g : 0.02	
o : 0.64	c : 0.10	n : 0.06	m : 0.04	a : 0.04	d : 0.04	b : 0.02	e : 0.02	! : 0.02	
o : 0.68	n : 0.14	m : 0.08	l : 0.02	c : 0.02	a : 0.02	d : 0.02	
o : 0.70	n : 0.14	m : 0.08	l : 0.04	c : 0.02	
o : 0.70	n : 0.14	m : 0.08	l : 0.06	
o : 0.70	n : 0.14	c : 0.04	m : 0.04	l : 0.04	d : 0.02	
o : 0.66	n : 0.08	a : 0.08	c : 0.06	d : 0.04	b : 0.04	l : 0.02	
c : 0.33	b : 0.20	d : 0.18	a : 0.06	o : 0.06	e : 0.04	] : 0.04	3 : 0.02	f : 0.02	g : 0.02	
c : 0.33	b : 0.18	d : 0.18	e : 0.10	4 : 0.04	f : 0.04	] : 0.02	3 : 0.02	i : 0.02	o : 0.02	g : 0.02	
c : 0.31	d : 0.18	] : 0.12	e : 0.10	3 : 0.06	4 : 0.04	f : 0.04	2 : 0.04	b : 0.02	i : 0.02	a : 0.02	g : 0.02	
d : 0.16	2 : 0.14	4 : 0.12	c : 0.12	e : 0.10	] : 0.08	3 : 0.06	a : 0.06	f : 0.04	g : 0.04	b : 0.02	i : 0.02	
e : 0.18	2 : 0.16	4 : 0.12	c : 0.10	] : 0.10	f : 0.08	3 : 0.08	b : 0.04	g : 0.04	d : 0.02	i : 0.02	= : 0.02	
c : 0.16	e : 0.14	d : 0.10	a : 0.10	4 : 0.08	f : 0.08	g : 0.06	2 : 0.06	] : 0.04	b : 0.04	i : 0.04	3 : 0.04	= : 0.02	
] : 0.16	c : 0.14	e : 0.12	2 : 0.10	d : 0.10	4 : 0.08	3 : 0.06	g : 0.06	f : 0.06	i : 0.04	b : 0.02	= : 0.02	
e : 0.16	d : 0.16	c : 0.16	2 : 0.10	3 : 0.08	b : 0.06	i : 0.06	f : 0.06	g : 0.04	] : 0.04	= : 0.04	
e : 0.18	d : 0.16	c : 0.12	f : 0.10	3 : 0.08	g : 0.08	b : 0.06	i : 0.06	a : 0.04	= : 0.04	h : 0.02	4 : 0.02	
] : 0.25	3 : 0.12	e : 0.10	d : 0.10	f : 0.10	c : 0.08	g : 0.08	i : 0.06	= : 0.04	h : 0.02	4 : 0.02	
c : 0.12	d : 0.12	3 : 0.10	e : 0.10	g : 0.10	a : 0.10	i : 0.06	f : 0.06	b : 0.04	4 : 0.04	= : 0.04	> : 0.02	2 : 0.02	h : 0.02	] : 0.02	
g : 0.12	c : 0.12	3 : 0.10	] : 0.10	e : 0.08	d : 0.08	2 : 0.06	i : 0.06	f : 0.06	b : 0.04	4 : 0.04	= : 0.04	> : 0.02	h : 0.02	0 : 0.02	
c : 0.16	g : 0.14	f : 0.10	d : 0.10	] : 0.08	e : 0.08	i : 0.08	2 : 0.04	= : 0.04	> : 0.02	a : 0.02	3 : 0.02	4 : 0.02	h : 0.02	b : 0.02	0 : 0.02	
g : 0.16	c : 0.14	f : 0.10	] : 0.08	i : 0.08	d : 0.08	e : 0.06	2 : 0.04	4 : 0.04	a : 0.04	= : 0.04	> : 0.02	3 : 0.02	h : 0.02	b : 0.02	0 : 0.02	
g : 0.18	c : 0.14	] : 0.12	2 : 0.08	i : 0.08	f : 0.06	d : 0.06	e : 0.06	= : 0.04	b : 0.02	> : 0.02	4 : 0.02	3 : 0.02	5 : 0.02	h : 0.02	0 : 0.02	
c : 0.18	g : 0.14	] : 0.08	i : 0.08	f : 0.08	e : 0.06	b : 0.04	3 : 0.04	= : 0.04	d : 0.04	a : 0.04	2 : 0.04	> : 0.02	4 : 0.02	5 : 0.02	h : 0.02	0 : 0.02	

#score	698.4341345416852
#seq	48
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_CDS_m2_run1.txt

#BEAR
YGGGGGGG}CCCDDDD:::	chr15:89173421-89173755(+)$1	334	315	334	10.4586
:GGGGGGGZZZCCC}CCCF	chr6:34212633-34212956(+)$1	323	275	294	12.0058
IIIIIIII}DDDDZZZDDD	chr7:128828800-128829136(+)$1	336	280	299	10.3171
}AFFFFFF}DDDDEEEEE:	chr14:102974082-102974380(-)$1	298	273	292	10.3160
HHHHHHHH}BB?????EEE	chr3:126261308-126261541(+)$1	233	191	210	12.2106
IIIIIIIII______DDDD	chr17:79890680-79890967(-)$1	287	197	216	10.4662
HHHHHHHH}BB}AZZZCCC	chr9:140003267-140003526(+)$1	259	206	225	13.1162
YBBFFFFFF~~~~EEEEEB	chr6:33740246-33740508(-)$1	262	227	246	10.7625
:GGGGGGG}A?????DDDD	chr15:79214287-79214628(-)$1	341	283	302	11.0131
FFFFFFEEEEE}CCCYYBB	chr16:69152295-69152557(-)$1	262	219	238	9.1352
}GGGGGGG}CCC}FFFFFF	chr22:41735771-41736035(+)$1	264	223	242	11.7708
FFFFFF}A}BB}CCCHHHH	chr19:51301265-51301532(-)$1	267	107	126	9.1678
fGGGGGGGEEEEEYYEEEE	chr19:55998204-55998443(+)$1	239	205	224	11.3400
B}GGGGGGGYYCCC}DDDD	chr19:49424394-49424649(+)$1	255	222	241	11.3154
:GGGGGGG}DDDDYYA}CC	chr19:55998500-55998818(+)$1	318	188	207	11.9533
:GGGGGGG}BBZZZEEEEE	chr19:42411237-42411601(+)$1	364	184	203	13.2395
HHHHHHHHYYCCCZZZFFF	chr19:3976116-3976413(-)$1	297	189	208	12.1637
:GGGGGGG~~~~CCC::::	chr13:113751047-113751331(+)$1	284	265	284	10.7259
JJJJJJJJJYYCCC}A}BB	chr19:3539129-3539393(-)$1	264	107	126	9.5887
fGGGGGGGZZZCCC}EEEE	chr19:1582520-1582764(-)$1	244	223	242	12.0538
HGGGGGGGEEEEEBBYYII	chr22:38054673-38055028(+)$1	355	328	347	11.3740
~GGGGGGGDDDDEEEEEYY	chr19:51301503-51301810(-)$1	307	264	283	11.1051
~GGGGGGGYYCCCEEEEE:	chr20:2124332-2124570(+)$1	238	206	225	12.2810
}GGGGGGG}BBCCC}BB::	chr18:77710756-77710996(-)$1	240	130	149	12.7117
JJJJJJ}A}BB}CCC}DDD	chr1:156109508-156109785(+)$1	277	245	264	9.9069
HHHHHHHHYYDDDDYYEEE	chr14:105235835-105236112(-)$1	277	230	249	12.6178
HHHHHHHH}BBZZZFFFFF	chr11:64532850-64533146(-)$1	296	224	243	12.4115
BGGGGGGGZZZBBZZZEEE	chr17:71204275-71204648(-)$1	373	338	357	13.0887
JJJJJJJJJBB}DDDDYYA	chr4:1161105-1161380(-)$1	275	171	190	9.1866
ZGGGGGGG}BBBB}DDDD}	chr12:133067155-133067507(+)$1	352	137	156	12.8537
::FFFFFF}EEEEE}CCC}	chr19:1592527-1592783(-)$1	256	219	238	9.5363
EEFFFFFF~~~~BBDDDD:	chr7:150778498-150778754(-)$1	256	237	256	10.0633
}GGGGGGG}BB}BBYYHHH	chr19:1924178-1924417(+)$1	239	209	228	13.2663
BGGGGGGG}BB}BB}EEEE	chr12:6457000-6457274(-)$1	274	233	252	14.2607
ZHHHHHHHHYYCCC}CCCB	chr2:220403865-220404214(-)$1	349	327	346	11.9655
JJJJJJJJ}DDDDEEEEEZ	chr2:70676561-70676840(-)$1	279	241	260	9.2744
HHHHHHHHCCC}EEEEEBB	chr16:2757350-2757627(+)$1	277	253	272	11.8115
D}FFFFFF}BB~~~~EEEE	chr9:139735160-139735485(+)$1	325	113	132	12.3074
BBHHHHHHHHYYBBYYHHH	chr8:145539865-145540320(-)$1	455	367	386	10.2886
HHHHHHHH}CCC~~~~EEE	chr19:6414887-6415155(-)$1	268	140	159	13.6043
BFFFFFFEEEEE~~~~DDD	chr16:1496110-1496380(-)$1	270	133	152	10.0701
HHHHHHHH}BBYYBBYYCC	chr9:130169509-130169893(+)$1	384	302	321	13.7339
IIIIIIIIIBB}EEEEE::	chr21:33686819-33687101(-)$1	282	186	205	10.4492
HHHHHHHH~~~~DDDD:::	chr19:4542935-4543267(-)$1	332	312	331	11.0363
YHHHHHHHHYYCCC}BB::	chr16:29818027-29818264(+)$1	237	217	236	11.3605
CGGGGGGG~~~~DDDDYYE	chr11:770254-770507(-)$1	253	127	146	12.5344
}GGGGGGG}EEEEEBB{CC	chr22:38471032-38471346(+)$1	314	230	249	11.7660
:GGGGGGGYYAYYDDDDFF	chr6:30593415-30593727(+)$1	312	250	269	11.9762
YHHHHHHHHZZZBBBBYYC	chr7:4801989-4802269(+)$1	280	223	242	12.1616
HHHHHHHH}BB}CCC~~~~	chr19:867906-868244(-)$1	338	149	168	13.3989
}GGGGGGG______CCC}D	chr11:1776035-1776288(-)$1	253	176	195	11.9579
::FFFFFF}EEEEEYYA}C	chr1:1374977-1375248(+)$1	271	143	162	9.9695
:GGGGGGG}EEEEEDDDDB	chr7:75615665-75615929(+)$1	264	112	131	11.6025
}GGGGGGG~~~~FFFFFFY	chr22:30824427-30824734(+)$1	307	262	281	12.3354
HHHHHHHH}BBYYFFFFFF	chr5:10680713-10680977(-)$1	264	200	219	12.5526
HHHHHHHH}BB}AZZZCCC	chr9:140003326-140003580(+)$1	254	147	166	13.1162
YHHHHHHHHBBBBFFFFFF	chr7:100276311-100276628(+)$1	317	66	85	11.1581

#otherMatches

#Seq PSSM
CUCCUGUGGUUUUGCUAAU	chr15:89173421-89173755(+)$1	334	315	334	10.4586
CCACGCAUACACACAUGCC	chr6:34212633-34212956(+)$1	323	275	294	12.0058
CGGCCUCGAGCGGGAACGC	chr7:128828800-128829136(+)$1	336	280	299	10.3171
GGUGCGCGACCUGCUACCC	chr14:102974082-102974380(-)$1	298	273	292	10.3160
ccaggaccccucuucaaga	chr3:126261308-126261541(+)$1	233	191	210	12.2106
CGGGCUCCUUCCUGAGAGC	chr17:79890680-79890967(-)$1	287	197	216	10.4662
CUGAGGCUCCAGGGCUGGC	chr9:140003267-140003526(+)$1	259	206	225	13.1162
CACGAUUCCAAAGGUCUGC	chr6:33740246-33740508(-)$1	262	227	246	10.7625
CUCUGUGCCCAGCCUGGAA	chr15:79214287-79214628(-)$1	341	283	302	11.0131
GUGAACGGACCAUGCUUCC	chr16:69152295-69152557(-)$1	262	219	238	9.1352
UGGCCGCCUCUGUGCUGGA	chr22:41735771-41736035(+)$1	264	223	242	11.7708
GGACAGACACCGCCUGGCC	chr19:51301265-51301532(-)$1	267	107	126	9.1678
CUCUCCCUCAGUGAGUCCU	chr19:55998204-55998443(+)$1	239	205	224	11.3400
CUCUGGCUGCCCGUGUCCG	chr19:49424394-49424649(+)$1	255	222	241	11.3154
GGGAGAGGAGGCCGAGCAG	chr19:55998500-55998818(+)$1	318	188	207	11.9533
UCUCUCCCUCCUGCCCUCU	chr19:42411237-42411601(+)$1	364	184	203	13.2395
GCAUUAAGAGGUUUAUUUG	chr19:3976116-3976413(-)$1	297	189	208	12.1637
CUCCGGGGCAGAGGCAGGU	chr13:113751047-113751331(+)$1	284	265	284	10.7259
AGGGGCUCACCUGUAGGGA	chr19:3539129-3539393(-)$1	264	107	126	9.5887
CAGGGUGGAUGGCUGUUCC	chr19:1582520-1582764(-)$1	244	223	242	12.0538
CUUCGCGCGCCUCGGCUUC	chr22:38054673-38055028(+)$1	355	328	347	11.3740
AGUGGGCUACCAAGGGCUU	chr19:51301503-51301810(-)$1	307	264	283	11.1051
GUGAAGCUUUuguuugggu	chr20:2124332-2124570(+)$1	238	206	225	12.2810
GCGGCCGCGGCCAUGGUCU	chr18:77710756-77710996(-)$1	240	130	149	12.7117
GGCAAGAGGGGGUGGAGGG	chr1:156109508-156109785(+)$1	277	245	264	9.9069
UUCCGCUGUCGCCCCAGGC	chr14:105235835-105236112(-)$1	277	230	249	12.6178
UUCCAGGCAGACAGCCUCA	chr11:64532850-64533146(-)$1	296	224	243	12.4115
CUGUCGGUCCAGAUUUGAA	chr17:71204275-71204648(-)$1	373	338	357	13.0887
GGCUCCUGUGCAGGCUCAU	chr4:1161105-1161380(-)$1	275	171	190	9.1866
Acgcgggccuccgcggcgc	chr12:133067155-133067507(+)$1	352	137	156	12.8537
AGGUCGGGGCUGUCGGCCG	chr19:1592527-1592783(-)$1	256	219	238	9.5363
GAGCCCAGCCCUGCGCCGC	chr7:150778498-150778754(-)$1	256	237	256	10.0633
UGGGAUGGUGGAAGCCGGU	chr19:1924178-1924417(+)$1	239	209	228	13.2663
UGAGAGGGAAGGAGAGGUU	chr12:6457000-6457274(-)$1	274	233	252	14.2607
UCCCUGCCCCCUGACGCUG	chr2:220403865-220404214(-)$1	349	327	346	11.9655
AUAGUGGAUAGCUCAUCCC	chr2:70676561-70676840(-)$1	279	241	260	9.2744
GAGGCAGACACUCCCAGUC	chr16:2757350-2757627(+)$1	277	253	272	11.8115
CAGGAGGGACCUGUGAGGG	chr9:139735160-139735485(+)$1	325	113	132	12.3074
CCUCUUCAGCCUGCCAGGG	chr8:145539865-145540320(-)$1	455	367	386	10.2886
GUGGCCGGAGGUCUCCGGG	chr19:6414887-6415155(-)$1	268	140	159	13.6043
CCCCGAGGGCUGCCCUGCC	chr16:1496110-1496380(-)$1	270	133	152	10.0701
GGGCCUCUAGGAUCUUUGU	chr9:130169509-130169893(+)$1	384	302	321	13.7339
GCUCGAGUUUGAGGCAGCA	chr21:33686819-33687101(-)$1	282	186	205	10.4492
GGGUCUCCGAGGUGCCGGU	chr19:4542935-4543267(-)$1	332	312	331	11.0363
uggggggggacgcccgccc	chr16:29818027-29818264(+)$1	237	217	236	11.3605
CCAAGGCCGACCGGCACUG	chr11:770254-770507(-)$1	253	127	146	12.5344
GCUCCUCUGUCCUCGCACA	chr22:38471032-38471346(+)$1	314	230	249	11.7660
ccaggaguuugagaccagc	chr6:30593415-30593727(+)$1	312	250	269	11.9762
AUCGGCGGCACCUGGACAC	chr7:4801989-4802269(+)$1	280	223	242	12.1616
GGGGGUCCAGGCGGACCUU	chr19:867906-868244(-)$1	338	149	168	13.3989
CCCCUGGGUUCUGUGGGCG	chr11:1776035-1776288(-)$1	253	176	195	11.9579
ccgugccccgcgccccgac	chr1:1374977-1375248(+)$1	271	143	162	9.9695
CUCCCUGGACGUGUGGAGC	chr7:75615665-75615929(+)$1	264	112	131	11.6025
CAGGGAGUCACAGAAGGGC	chr22:30824427-30824734(+)$1	307	262	281	12.3354
UGCUUUUUAGUAUGGGCCA	chr5:10680713-10680977(-)$1	264	200	219	12.5526
CUGAGGCUCCAGGGCUGGC	chr9:140003326-140003580(+)$1	254	147	166	13.1162
CUGUGGCCACGGGCUCCUG	chr7:100276311-100276628(+)$1	317	66	85	11.1581

#DB
.))))))).)))))))...	chr15:89173421-89173755(+)$1	1	315	334	10.4586
.)))))))...))).))))	chr6:34212633-34212956(+)$1	1	275	294	12.0058
)))))))).))))...)))	chr7:128828800-128829136(+)$1	1	280	299	10.3171
.))))))).))))))))).	chr14:102974082-102974380(-)$1	1	273	292	10.3160
)))))))).)).....)))	chr3:126261308-126261541(+)$1	1	191	210	12.2106
)))))))))......))))	chr17:79890680-79890967(-)$1	1	197	216	10.4662
)))))))).)).)...)))	chr9:140003267-140003526(+)$1	1	206	225	13.1162
.))))))))....))))))	chr6:33740246-33740508(-)$1	1	227	246	10.7625
.))))))).).....))))	chr15:79214287-79214628(-)$1	1	283	302	11.0131
))))))))))).)))..))	chr16:69152295-69152557(-)$1	1	219	238	9.1352
.))))))).))).))))))	chr22:41735771-41736035(+)$1	1	223	242	11.7708
)))))).).)).)))))))	chr19:51301265-51301532(-)$1	1	107	126	9.1678
)))))))))))))..))))	chr19:55998204-55998443(+)$1	1	205	224	11.3400
).)))))))..))).))))	chr19:49424394-49424649(+)$1	1	222	241	11.3154
.))))))).))))..).))	chr19:55998500-55998818(+)$1	1	188	207	11.9533
.))))))).))...)))))	chr19:42411237-42411601(+)$1	1	184	203	13.2395
))))))))..)))...)))	chr19:3976116-3976413(-)$1	1	189	208	12.1637
.)))))))....)))....	chr13:113751047-113751331(+)$1	1	265	284	10.7259
)))))))))..))).).))	chr19:3539129-3539393(-)$1	1	107	126	9.5887
))))))))...))).))))	chr19:1582520-1582764(-)$1	1	223	242	12.0538
)))))))))))))))..))	chr22:38054673-38055028(+)$1	1	328	347	11.3740
.))))))))))))))))..	chr19:51301503-51301810(-)$1	1	264	283	11.1051
.)))))))..)))))))).	chr20:2124332-2124570(+)$1	1	206	225	12.2810
.))))))).))))).))..	chr18:77710756-77710996(-)$1	1	130	149	12.7117
)))))).).)).))).)))	chr1:156109508-156109785(+)$1	1	245	264	9.9069
))))))))..))))..)))	chr14:105235835-105236112(-)$1	1	230	249	12.6178
)))))))).))...)))))	chr11:64532850-64533146(-)$1	1	224	243	12.4115
))))))))...))...)))	chr17:71204275-71204648(-)$1	1	338	357	13.0887
))))))))))).))))..)	chr4:1161105-1161380(-)$1	1	171	190	9.1866
.))))))).)))).)))).	chr12:133067155-133067507(+)$1	1	137	156	12.8537
..)))))).))))).))).	chr19:1592527-1592783(-)$1	1	219	238	9.5363
))))))))....)))))).	chr7:150778498-150778754(-)$1	1	237	256	10.0633
.))))))).)).))..)))	chr19:1924178-1924417(+)$1	1	209	228	13.2663
)))))))).)).)).))))	chr12:6457000-6457274(-)$1	1	233	252	14.2607
.))))))))..))).))))	chr2:220403865-220404214(-)$1	1	327	346	11.9655
)))))))).))))))))).	chr2:70676561-70676840(-)$1	1	241	260	9.2744
))))))))))).)))))))	chr16:2757350-2757627(+)$1	1	253	272	11.8115
).)))))).))....))))	chr9:139735160-139735485(+)$1	1	113	132	12.3074
))))))))))..))..)))	chr8:145539865-145540320(-)$1	1	367	386	10.2886
)))))))).)))....)))	chr19:6414887-6415155(-)$1	1	140	159	13.6043
))))))))))))....)))	chr16:1496110-1496380(-)$1	1	133	152	10.0701
)))))))).))..))..))	chr9:130169509-130169893(+)$1	1	302	321	13.7339
))))))))))).)))))..	chr21:33686819-33687101(-)$1	1	186	205	10.4492
))))))))....))))...	chr19:4542935-4543267(-)$1	1	312	331	11.0363
.))))))))..))).))..	chr16:29818027-29818264(+)$1	1	217	236	11.3605
))))))))....))))..)	chr11:770254-770507(-)$1	1	127	146	12.5344
.))))))).)))))((.((	chr22:38471032-38471346(+)$1	1	230	249	11.7660
.)))))))..)..))))))	chr6:30593415-30593727(+)$1	1	250	269	11.9762
.))))))))...))))..)	chr7:4801989-4802269(+)$1	1	223	242	12.1616
)))))))).)).)))....	chr19:867906-868244(-)$1	1	149	168	13.3989
.)))))))......))).)	chr11:1776035-1776288(-)$1	1	176	195	11.9579
..)))))).)))))..).)	chr1:1374977-1375248(+)$1	1	143	162	9.9695
.))))))).)))))(((((	chr7:75615665-75615929(+)$1	1	112	131	11.6025
.)))))))....)))))).	chr22:30824427-30824734(+)$1	1	262	281	12.3354
)))))))).))..))))))	chr5:10680713-10680977(-)$1	1	200	219	12.5526
)))))))).)).)...)))	chr9:140003326-140003580(+)$1	1	147	166	13.1162
.))))))))))))))))))	chr7:100276311-100276628(+)$1	1	66	85	11.1581

#PSSM
H : 0.22	: : 0.15	} : 0.12	Y : 0.08	B : 0.08	J : 0.07	I : 0.05	F : 0.03	f : 0.03	~ : 0.03	Z : 0.03	E : 0.01	D : 0.01	C : 0.01	
G : 0.40	H : 0.28	J : 0.07	I : 0.05	F : 0.05	B : 0.03	} : 0.03	: : 0.03	A : 0.01	E : 0.01	
G : 0.42	H : 0.29	F : 0.14	J : 0.07	I : 0.05	B : 0.01	
G : 0.42	H : 0.29	F : 0.15	J : 0.07	I : 0.05	
G : 0.42	H : 0.29	F : 0.15	J : 0.07	I : 0.05	
G : 0.42	H : 0.29	F : 0.15	J : 0.07	I : 0.05	
G : 0.42	H : 0.29	F : 0.12	I : 0.05	J : 0.05	} : 0.03	E : 0.01	
G : 0.42	H : 0.29	F : 0.10	I : 0.05	J : 0.05	E : 0.03	A : 0.03	
} : 0.47	~ : 0.08	H : 0.08	E : 0.07	Y : 0.07	Z : 0.05	I : 0.03	J : 0.03	F : 0.01	G : 0.01	D : 0.01	C : 0.01	_ : 0.01	
B : 0.31	E : 0.14	Y : 0.14	~ : 0.10	D : 0.08	C : 0.07	Z : 0.07	_ : 0.03	A : 0.01	H : 0.01	
B : 0.31	E : 0.14	C : 0.10	D : 0.10	~ : 0.10	Y : 0.08	Z : 0.07	_ : 0.03	? : 0.01	A : 0.01	
C : 0.21	} : 0.19	~ : 0.12	E : 0.12	D : 0.10	Y : 0.07	Z : 0.05	B : 0.05	? : 0.03	_ : 0.03	
C : 0.24	D : 0.15	E : 0.15	B : 0.14	~ : 0.07	Y : 0.05	? : 0.03	_ : 0.03	A : 0.03	Z : 0.03	} : 0.01	F : 0.01	
C : 0.21	E : 0.19	Z : 0.12	B : 0.12	D : 0.10	F : 0.07	~ : 0.05	? : 0.03	_ : 0.03	Y : 0.03	} : 0.01	
} : 0.15	D : 0.14	E : 0.14	C : 0.10	Y : 0.10	Z : 0.08	F : 0.08	B : 0.07	~ : 0.05	? : 0.03	_ : 0.01	
E : 0.21	D : 0.19	Y : 0.12	Z : 0.08	F : 0.08	C : 0.07	B : 0.07	~ : 0.05	A : 0.03	? : 0.01	H : 0.01	: : 0.01	} : 0.01	
E : 0.28	D : 0.17	C : 0.10	Y : 0.10	F : 0.10	: : 0.05	H : 0.05	} : 0.03	B : 0.03	{ : 0.01	~ : 0.01	A : 0.01	
E : 0.22	D : 0.15	C : 0.14	F : 0.12	: : 0.10	Y : 0.07	B : 0.05	H : 0.05	} : 0.03	I : 0.01	~ : 0.01	
E : 0.17	: : 0.15	F : 0.12	D : 0.12	C : 0.12	B : 0.10	H : 0.05	Y : 0.03	} : 0.03	I : 0.01	A : 0.01	Z : 0.01	~ : 0.01	

#score	658.2176890719737
#seq	57
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_transcript_m3_run1.txt

#BEAR
Fddddqqqqqqqqdddd	chr11:32605279-32605544(+)$1	265	169	186	13.9487
!!cccqqqqqqqqccc]	chr11:65211480-65211747(+)$1	267	4	21	14.2100
!ddddqqqqqqqqdddd	chr12:112846355-112846560(-)$1	205	2	19	14.5045
[ddddqqqqqqqqdddd	chr19:893457-893688(+)$1	231	145	162	14.4700
!!cccqqqqqqqqcccd	chr8:126010673-126010976(+)$1	303	115	132	14.2879
eeeeeqqqqqqqqeeee	chr7:10979563-10979855(-)$1	292	28	45	13.3313
:ddddqqqqqqqqdddd	chr12:96252645-96252923(+)$1	278	252	269	13.5146
"""bbqqqqqqqqbb33	chr17:7210825-7211170(+)$1	345	244	261	12.9794
Dddddqqqqqqqqdddd	chr17:26903718-26903958(-)$1	240	40	57	13.4007
eeeeeqqqqqqqqeeee	chr11:75110463-75110722(+)$1	259	150	167	13.3313
"ddddqqqqqqqqdddd	chr15:78832687-78832980(+)$1	293	218	235	14.4696
###bbqqqqqqqqbb22	chr1:149858072-149858325(-)$1	253	38	55	12.4751
!!cccqqqqqqqqccc]	chr6:26285544-26285845(-)$1	301	123	140	14.2100
eeeeeqqqqqqqqeeee	chr6:26158312-26158602(+)$1	290	264	281	13.3313
ddcccqqqqqqqqccc>	chr19:49999594-49999824(+)$1	230	21	38	13.5639
gggggqqqqqqqqgggg	chr1:228645377-228645637(-)$1	260	183	200	13.1923
Eddddqqqqqqqqdddd	chr4:56963491-56963728(+)$1	237	67	84	13.4693
[ddddqqqqqqqqdddd	chr2:28974686-28975030(+)$1	344	317	334	14.4700
dddddqqqqqqqqdddd	chr1:197115494-197115795(-)$1	301	66	83	14.1877
fffffqqqqqqqqffff	chr6:27100350-27100637(-)$1	287	92	109	12.4187
ccc[aqqqqqqqqa]cc	chr19:47731985-47732287(-)$1	302	135	152	13.5485
[ddddqqqqqqqqdddd	chr1:26232785-26233010(-)$1	225	199	216	14.4700
""cccqqqqqqqqccc2	chr4:39459913-39460161(-)$1	248	111	128	13.8858
ffffaqqqqqqqqa]ff	chr15:44580970-44581218(+)$1	248	35	52	12.8501
gggggqqqqqqqqgggg	chr11:5269438-5269750(-)$1	312	182	199	13.1923
[ddddqqqqqqqqdddd	chr17:18965295-18965531(+)$1	236	184	201	14.4700
####aqqqqqqqqa444	chr22:24951875-24952129(+)$1	254	132	149	13.5040
[a!!aqqqqqqqqa22a	chr19:45981776-45982009(-)$1	233	190	207	13.2310
iiiiiqqqqqqqqiiii	chr8:28387857-28388118(+)$1	261	62	79	13.1718
eeeeeqqqqqqqqeeee	chr3:23958537-23958766(+)$1	229	117	134	13.3313
cddddqqqqqqqqdddd	chr1:26232779-26232985(-)$1	206	174	191	14.2918
""cccqqqqqqqqccc]	chr6:27860776-27861050(-)$1	274	11	28	14.1042
ddd[aqqqqqqqqa]dd	chr1:111991988-111992304(+)$1	316	294	311	13.8331
ff[bbqqqqqqqqbbff	chr8:110346477-110346751(+)$1	274	78	95	12.3440
eeeeeqqqqqqqqeeee	chr19:50000350-50000565(+)$1	215	131	148	13.3313
:ddddqqqqqqqqdddd	chr12:56510477-56510683(+)$1	206	41	58	13.5146
h!!bbqqqqqqqqbbhh	chr11:17099065-17099318(-)$1	253	57	74	12.3235
c!!bbqqqqqqqqbbcc	chr17:56429328-56429653(-)$1	325	73	90	13.0302
""cccqqqqqqqqcccd	chr19:36142034-36142264(+)$1	230	184	201	14.1821
eeeeeqqqqqqqqeeee	chr17:72199765-72199985(+)$1	220	88	105	13.3313
:ddddqqqqqqqqdddd	chr15:66795738-66795962(-)$1	224	80	97	13.5146
!ddddqqqqqqqqdddd	chr17:26903758-26904015(-)$1	257	97	114	14.5045
$ddddqqqqqqqqdddd	chr3:52029768-52030022(-)$1	254	147	164	14.2384
bddddqqqqqqqqdddd	chr12:57066704-57066950(-)$1	246	177	194	14.0657
d[cccqqqqqqqqccc]	chr11:67351534-67351741(+)$1	207	46	63	13.8434
cddddqqqqqqqqdddd	chr12:6976600-6976847(+)$1	247	221	238	14.2918
:ddddqqqqqqqqdddd	chr7:54825116-54825362(-)$1	246	160	177	13.5146
dd[bbqqqqqqqqbb]d	chr1:109642825-109643028(+)$1	203	6	23	12.8523
fffffqqqqqqqqffff	chr6:27835150-27835448(-)$1	298	16	33	12.4187
fffffqqqqqqqqffff	chr15:90777004-90777263(-)$1	259	98	115	12.4187
eeeeeqqqqqqqqeeee	chr17:26902392-26902664(-)$1	272	218	235	13.3313
Cddddqqqqqqqqdddd	chr9:128003305-128003571(-)$1	266	87	104	13.3430
eeeeeqqqqqqqqeeee	chr3:40498729-40498955(+)$1	226	9	26	13.3313
ggggaqqqqqqqqa]gg	chr11:64084824-64085089(-)$1	265	210	227	13.3994
[a!!aqqqqqqqqa22a	chr19:45981755-45981960(-)$1	205	141	158	13.2310
####aqqqqqqqqa444	chr2:97560688-97560992(-)$1	304	108	125	13.5040
d[cccqqqqqqqqccc]	chr10:105156063-105156305(-)$1	242	119	136	13.8434
fffffqqqqqqqqffff	chr15:66797025-66797283(-)$1	258	221	238	12.4187
ffcccqqqqqqqqccc:	chr3:134502249-134502488(-)$1	239	174	191	12.6119
c[cccqqqqqqqqccc]	chr8:74205736-74205964(-)$1	228	28	45	13.9475

#otherMatches

#Seq PSSM
UUCAUCGACAUCAGUGA	chr11:32605279-32605544(+)$1	265	169	186	13.9487
AGGUUGGGACUUAGAUG	chr11:65211480-65211747(+)$1	267	4	21	14.2100
CUGGGGAGCCCAGCCCA	chr12:112846355-112846560(-)$1	205	2	19	14.5045
auuuucccucccagaaa	chr19:893457-893688(+)$1	231	145	162	14.4700
UACUCUGGUUACUGGGG	chr8:126010673-126010976(+)$1	303	115	132	14.2879
GCCCUCCCAGCCAAGGG	chr7:10979563-10979855(-)$1	292	28	45	13.3313
GGAGGGAGACCAGCCUC	chr12:96252645-96252923(+)$1	278	252	269	13.5146
AGGUGAGAGCGGGCAGG	chr17:7210825-7211170(+)$1	345	244	261	12.9794
GCCUCAUUUACCAGAGG	chr17:26903718-26903958(-)$1	240	40	57	13.4007
AGAGGAAGGUGAGCCUC	chr11:75110463-75110722(+)$1	259	150	167	13.3313
CGCGGAAGCUUGGCCGC	chr15:78832687-78832980(+)$1	293	218	235	14.4696
GGAGCCCUAAUUUGCAU	chr1:149858072-149858325(-)$1	253	38	55	12.4751
UGGCCGUGGUAAAGGUG	chr6:26285544-26285845(-)$1	301	123	140	14.2100
GGGGAUCAUGAAUUCCU	chr6:26158312-26158602(+)$1	290	264	281	13.3313
UGCGUUUCUCCUUACGU	chr19:49999594-49999824(+)$1	230	21	38	13.5639
CGGGGCUGCAGUUCCCC	chr1:228645377-228645637(-)$1	260	183	200	13.1923
uacggccauaccaccgu	chr4:56963491-56963728(+)$1	237	67	84	13.4693
AGCUGAACGUGGACAGC	chr2:28974686-28975030(+)$1	344	317	334	14.4700
UCUAGGGAGUAGGUUAG	chr1:197115494-197115795(-)$1	301	66	83	14.1877
AUAGCUACACAGUGCUA	chr6:27100350-27100637(-)$1	287	92	109	12.4187
AGUCCUUGUGUGUGUGC	chr19:47731985-47732287(-)$1	302	135	152	13.5485
GGCUGGGCCGUGGCAGC	chr1:26232785-26233010(-)$1	225	199	216	14.4700
AUUCUCAGCAAUCAGAC	chr4:39459913-39460161(-)$1	248	111	128	13.8858
AAGCCUCCGGAACGCGU	chr15:44580970-44581218(+)$1	248	35	52	12.8501
AGCUUUCAAGGAUAGGC	chr11:5269438-5269750(-)$1	312	182	199	13.1923
UAAACUCCGGGCCGUUU	chr17:18965295-18965531(+)$1	236	184	201	14.4700
GGACCGAAGAGAAGAAA	chr22:24951875-24952129(+)$1	254	132	149	13.5040
ACUUCUUUUGCUUGUUG	chr19:45981776-45982009(-)$1	233	190	207	13.2310
ggcugCUAgucuauggu	chr8:28387857-28388118(+)$1	261	62	79	13.1718
CAGCCAUCAGGUAGGCU	chr3:23958537-23958766(+)$1	229	117	134	13.3313
GGCUGGGCCGUGGCAGC	chr1:26232779-26232985(-)$1	206	174	191	14.2918
AAGCUUAGCCAAUGGCC	chr6:27860776-27861050(-)$1	274	11	28	14.1042
GGCGCAGCGACACGGGC	chr1:111991988-111992304(+)$1	316	294	311	13.8331
AAUGCGUGUUCUAGCUU	chr8:110346477-110346751(+)$1	274	78	95	12.3440
UCUUUCAAAACAAGAAG	chr19:50000350-50000565(+)$1	215	131	148	13.3313
CACAGCAAACUAACUGU	chr12:56510477-56510683(+)$1	206	41	58	13.5146
CUUCCUGCGUGUUGGGU	chr11:17099065-17099318(-)$1	253	57	74	12.3235
CAUUCUGGGUAACGAGC	chr17:56429328-56429653(-)$1	325	73	90	13.0302
ACCAGACUAGAAACUGC	chr19:36142034-36142264(+)$1	230	184	201	14.1821
GUGUCUCUAGGGUGAUA	chr17:72199765-72199985(+)$1	220	88	105	13.3313
UGUCUUUUUCUUUAGGC	chr15:66795738-66795962(-)$1	224	80	97	13.5146
GCCUCAUUUACCAGAGG	chr17:26903758-26904015(-)$1	257	97	114	14.5045
AUGGUGAGUGUUGGCCG	chr3:52029768-52030022(-)$1	254	147	164	14.2384
GUUAAUGUAAAUUUUGA	chr12:57066704-57066950(-)$1	246	177	194	14.0657
CAAACUUUUCUUUGUUC	chr11:67351534-67351741(+)$1	207	46	63	13.8434
CGGCCAAGGUGCCGGCC	chr12:6976600-6976847(+)$1	247	221	238	14.2918
AACCUGAUAGAAAAGGU	chr7:54825116-54825362(-)$1	246	160	177	13.5146
CGGCCUGGGUCCUGGGU	chr1:109642825-109643028(+)$1	203	6	23	12.8523
AUUGGACGCUCCACCAA	chr6:27835150-27835448(-)$1	298	16	33	12.4187
UGUCUGCGUCUCGAGGC	chr15:90777004-90777263(-)$1	259	98	115	12.4187
GUCUGUAGGUAAGUGGA	chr17:26902392-26902664(-)$1	272	218	235	13.3313
UGCAAGUCGGAAAUUGC	chr9:128003305-128003571(-)$1	266	87	104	13.3430
gcacCAACCAAUCGGUG	chr3:40498729-40498955(+)$1	226	9	26	13.3313
GGGCCGGGGUCCAGUGC	chr11:64084824-64085089(-)$1	265	210	227	13.3994
ACUUCUUUUGCUUGUUG	chr19:45981755-45981960(-)$1	205	141	158	13.2310
ggaaggaaaagagcggg	chr2:97560688-97560992(-)$1	304	108	125	13.5040
CGGAAUUUGCGGCUUUG	chr10:105156063-105156305(-)$1	242	119	136	13.8434
GGUUCGGAGCAUAGAAU	chr15:66797025-66797283(-)$1	258	221	238	12.4187
ugggagaAAUACAUCCA	chr3:134502249-134502488(-)$1	239	174	191	12.6119
AAGACACCUAUGAGUCG	chr8:74205736-74205964(-)$1	228	28	45	13.9475

#DB
)((((........))))	chr11:32605279-32605544(+)$1	1	169	186	13.9487
..(((........))).	chr11:65211480-65211747(+)$1	1	4	21	14.2100
.((((........))))	chr12:112846355-112846560(-)$1	1	2	19	14.5045
.((((........))))	chr19:893457-893688(+)$1	1	145	162	14.4700
..(((........))))	chr8:126010673-126010976(+)$1	1	115	132	14.2879
(((((........))))	chr7:10979563-10979855(-)$1	1	28	45	13.3313
.((((........))))	chr12:96252645-96252923(+)$1	1	252	269	13.5146
...((........))..	chr17:7210825-7211170(+)$1	1	244	261	12.9794
(((((........))))	chr17:26903718-26903958(-)$1	1	40	57	13.4007
(((((........))))	chr11:75110463-75110722(+)$1	1	150	167	13.3313
.((((........))))	chr15:78832687-78832980(+)$1	1	218	235	14.4696
...((........))..	chr1:149858072-149858325(-)$1	1	38	55	12.4751
..(((........))).	chr6:26285544-26285845(-)$1	1	123	140	14.2100
(((((........))))	chr6:26158312-26158602(+)$1	1	264	281	13.3313
(((((........))).	chr19:49999594-49999824(+)$1	1	21	38	13.5639
(((((........))))	chr1:228645377-228645637(-)$1	1	183	200	13.1923
(((((........))))	chr4:56963491-56963728(+)$1	1	67	84	13.4693
.((((........))))	chr2:28974686-28975030(+)$1	1	317	334	14.4700
(((((........))))	chr1:197115494-197115795(-)$1	1	66	83	14.1877
(((((........))))	chr6:27100350-27100637(-)$1	1	92	109	12.4187
(((.(........).))	chr19:47731985-47732287(-)$1	1	135	152	13.5485
.((((........))))	chr1:26232785-26233010(-)$1	1	199	216	14.4700
..(((........))).	chr4:39459913-39460161(-)$1	1	111	128	13.8858
(((((........).))	chr15:44580970-44581218(+)$1	1	35	52	12.8501
(((((........))))	chr11:5269438-5269750(-)$1	1	182	199	13.1923
.((((........))))	chr17:18965295-18965531(+)$1	1	184	201	14.4700
....(........)...	chr22:24951875-24952129(+)$1	1	132	149	13.5040
.(..(........)..)	chr19:45981776-45982009(-)$1	1	190	207	13.2310
(((((........))))	chr8:28387857-28388118(+)$1	1	62	79	13.1718
(((((........))))	chr3:23958537-23958766(+)$1	1	117	134	13.3313
(((((........))))	chr1:26232779-26232985(-)$1	1	174	191	14.2918
..(((........))).	chr6:27860776-27861050(-)$1	1	11	28	14.1042
(((.(........).))	chr1:111991988-111992304(+)$1	1	294	311	13.8331
((.((........))))	chr8:110346477-110346751(+)$1	1	78	95	12.3440
(((((........))))	chr19:50000350-50000565(+)$1	1	131	148	13.3313
.((((........))))	chr12:56510477-56510683(+)$1	1	41	58	13.5146
(..((........))))	chr11:17099065-17099318(-)$1	1	57	74	12.3235
(..((........))))	chr17:56429328-56429653(-)$1	1	73	90	13.0302
..(((........))))	chr19:36142034-36142264(+)$1	1	184	201	14.1821
(((((........))))	chr17:72199765-72199985(+)$1	1	88	105	13.3313
.((((........))))	chr15:66795738-66795962(-)$1	1	80	97	13.5146
.((((........))))	chr17:26903758-26904015(-)$1	1	97	114	14.5045
.((((........))))	chr3:52029768-52030022(-)$1	1	147	164	14.2384
(((((........))))	chr12:57066704-57066950(-)$1	1	177	194	14.0657
(.(((........))).	chr11:67351534-67351741(+)$1	1	46	63	13.8434
)((((........))))	chr12:6976600-6976847(+)$1	1	221	238	14.2918
.((((........))))	chr7:54825116-54825362(-)$1	1	160	177	13.5146
((.((........)).)	chr1:109642825-109643028(+)$1	1	6	23	12.8523
(((((........))))	chr6:27835150-27835448(-)$1	1	16	33	12.4187
(((((........))))	chr15:90777004-90777263(-)$1	1	98	115	12.4187
(((((........))))	chr17:26902392-26902664(-)$1	1	218	235	13.3313
(((((........))))	chr9:128003305-128003571(-)$1	1	87	104	13.3430
(((((........))))	chr3:40498729-40498955(+)$1	1	9	26	13.3313
(((((........).))	chr11:64084824-64085089(-)$1	1	210	227	13.3994
.(..(........)..)	chr19:45981755-45981960(-)$1	1	141	158	13.2310
....(........)...	chr2:97560688-97560992(-)$1	1	108	125	13.5040
(.(((........))).	chr10:105156063-105156305(-)$1	1	119	136	13.8434
(((((........))))	chr15:66797025-66797283(-)$1	1	221	238	12.4187
))(((........))).	chr3:134502249-134502488(-)$1	1	174	191	12.6119
(.(((........))).	chr8:74205736-74205964(-)$1	1	28	45	13.9475

#PSSM
e : 0.13	f : 0.11	[ : 0.09	d : 0.09	! : 0.08	" : 0.08	c : 0.08	: : 0.06	# : 0.05	g : 0.05	F : 0.01	D : 0.01	E : 0.01	i : 0.01	h : 0.01	$ : 0.01	b : 0.01	C : 0.01	
d : 0.38	e : 0.13	f : 0.11	! : 0.08	" : 0.06	# : 0.05	g : 0.05	[ : 0.05	a : 0.03	c : 0.01	i : 0.01	
d : 0.35	c : 0.19	e : 0.13	f : 0.08	! : 0.06	# : 0.05	g : 0.05	[ : 0.03	" : 0.01	i : 0.01	
d : 0.33	c : 0.18	e : 0.13	b : 0.09	f : 0.08	g : 0.05	[ : 0.03	# : 0.03	! : 0.03	i : 0.01	
d : 0.33	c : 0.18	e : 0.13	a : 0.13	b : 0.09	f : 0.06	g : 0.03	i : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.33	c : 0.18	e : 0.13	a : 0.13	b : 0.09	f : 0.06	g : 0.03	i : 0.01	
d : 0.33	c : 0.18	e : 0.13	b : 0.09	f : 0.06	] : 0.06	g : 0.03	4 : 0.03	2 : 0.03	i : 0.01	
d : 0.35	c : 0.21	e : 0.13	f : 0.09	2 : 0.05	g : 0.05	4 : 0.03	3 : 0.01	i : 0.01	h : 0.01	] : 0.01	
d : 0.39	e : 0.13	] : 0.09	f : 0.09	g : 0.05	2 : 0.03	c : 0.03	4 : 0.03	a : 0.03	3 : 0.01	> : 0.01	i : 0.01	h : 0.01	: : 0.01	

#score	812.333993035423
#seq	60
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_CDS_m2_run2.txt

#BEAR
gggg!!ddddmmmmdddd22ggggggg4444hh	chr6:27107261-27107520(+)$1	259	87	120	8.2782
gggggg[cccooooooccc]ggggggg22dddd	chr6:26104095-26104349(+)$1	254	67	100	11.6546
==="""ccc[aooooooa]ccc4444=======	chr6:26216376-26216595(-)$1	219	139	172	13.6374
[bb[cccoooooocccbb]ccc]ccc22eeeee	chr1:149858807-149859059(+)$1	252	173	206	8.9763
ddd"""eeeeennnnneeeee22ddddcccfff	chr6:27806700-27806930(+)$1	230	41	74	9.9876
dccc[ccc[bbnnnnnbb]ccc]ccc333dddd	chr6:27861507-27861762(+)$1	255	30	63	15.2372
c!!cccccc[bbmmmmbbccc22ccc333cccc	chr6:26104270-26104518(+)$1	248	142	175	12.7084
dccc[ccc[bbnnnnnbb]ccc]ccc333dddd	chr6:27114050-27114338(-)$1	288	58	91	15.2372
cc"""ddddpppppppdddd333ccc4444ccc	chr6:26285601-26285829(-)$1	228	11	44	9.0560
eee[cccdddd"""cccooooooccc333dddd	chr6:26055952-26056192(-)$1	240	109	142	9.2006
dccc[ccc[bbnnnnnbb]ccc]ccc333dddd	chr6:27100099-27100334(-)$1	235	102	135	15.2372
a!!bb[ccc[bbmmmmbb]ccc]bb]agggggg	chr6:27101102-27101336(+)$1	234	127	160	10.1031
dccc[ccc[bbnnnnnbb]ccc]ccc333dddd	chr6:27100038-27100299(-)$1	261	67	100	15.2372
dd[bb[cccddddllldddd333ccc]bbdddd	chr6:27100255-27100499(-)$1	244	95	128	10.0159
fff!!ffffffrrrrrrrrrffffff4444fff	chr6:27776257-27776474(+)$1	217	25	58	9.0030
eee[cccdddd"""cccooooooccc333dddd	chr6:26055917-26056127(-)$1	210	44	77	9.2006
ddd"""eeeeennnnneeeee22ddddgggggg	chr6:27806642-27806870(+)$1	228	99	132	10.2215
a!!bb[ccc[bbmmmmbb]ccc]bb]agggggg	chr6:27101136-27101368(+)$1	232	93	126	10.1031
#ccc"""eeeeellleeeee333ccceeeee]d	chr6:26124687-26124937(+)$1	250	79	112	10.2845
"ccc[a!!cccnnnnnccc]a]ccc]bb]a]cc	chr6:26158665-26158934(+)$1	269	41	74	11.2794
iii"""eeeeennnnneeeee333iiiiiiiii	chr6:26285310-26285531(-)$1	221	78	111	12.0472
fff!!ffffffrrrrrrrrrffffff4444fff	chr6:27776204-27776455(+)$1	251	78	111	9.0030
gg####eeeeennnnneeeee4444gggggggC	chr6:26205025-26205291(+)$1	266	121	154	10.0867
iiiiiiii[ccclllccc333iiiiiiiii]dd	chr6:26216395-26216649(-)$1	254	139	172	11.1310
===[ffffff[bblllbb]ffffff]=======	chr6:26104191-26104413(+)$1	222	124	157	9.4197
2ffffff==========22ggggggg333dddd	chr6:26285543-26285801(-)$1	258	113	146	9.0120
c!!cccccc[bbmmmmbbccc22ccc333cccc	chr6:26104348-26104600(+)$1	252	64	97	12.7084
dccc[ccccccmmmmccc]ccc]ccc333dddd	chr1:149857670-149857939(-)$1	269	46	79	13.4903
!!a[dddd[bboooooobb]dddd]a]ffffff	chr6:27101085-27101301(+)$1	216	63	96	8.5694
fccc!!ccc[aooooooa]cccccc55555fff	chr6:26198977-26199246(-)$1	269	31	64	10.1706
dd[a[eeeeennnnneeeee]adddd4444ccc	chr6:26204941-26205205(+)$1	264	134	167	10.1882
dd####ccccccpppppppccc]ccc333dddd	chr6:26234369-26234611(-)$1	242	26	59	9.9510
a[gggggggbblllbb22ggggggg]a333a]e	chr6:26197341-26197588(-)$1	247	163	196	9.3775
========a[aooooooa]a]===========]	chr1:149858918-149859185(-)$1	267	181	214	12.4926
c!!bb!!ddddnnnnnddddbb22cccgggggg	chr6:27775881-27776120(+)$1	239	144	177	9.8548
:ccc"""cccooooooccc333cccccclllcc	chr6:27834471-27834760(-)$1	289	27	60	10.5150
dccc[ccc[cccmmmmcccccc]ccc333dddd	chr6:26123600-26123855(-)$1	255	20	53	13.2767
ccc[gggggggnnnnnggggggg22cccfffff	chr6:26217459-26217694(+)$1	235	13	46	9.7424
iiiii[bbbboooooobb]bb]iiiiiiiiicc	chr6:27778110-27778356(+)$1	246	190	223	10.5151
eee[cccdddd"""cccooooooccc333dddd	chr6:26055927-26056132(-)$1	205	49	82	9.2006

#otherMatches

#Seq PSSM
GUCUACGCGCUCAAGCGCCAGGGCCGCACCCUC	chr6:27107261-27107520(+)$1	259	87	120	8.2782
UGCGAUAGGAAUCAUGUCUGGUCGCGGCAAAGG	chr6:26104095-26104349(+)$1	254	67	100	11.6546
UUUUCAGAGCCACUCAAGUCUCACAUAAAGAGC	chr6:26216376-26216595(-)$1	219	139	172	13.6374
AAUGCGCUAUUUCGUGAUCAGCCCUUCAUUUGA	chr1:149858807-149859059(+)$1	252	173	206	8.9763
GCUGCUGCCAGGGGAGCUGGCCAAGCACGCGGU	chr6:27806700-27806930(+)$1	230	41	74	9.9876
CGCCUGCUGCUGCCCGGGGAGCUGGCCAAGCAC	chr6:27861507-27861762(+)$1	255	30	63	15.2372
AAAACUGUCACAGCCAUGGAUGUAGUAUAUGCC	chr6:26104270-26104518(+)$1	248	142	175	12.7084
CGCCUGCUGCUGCCCGGGGAGUUGGCCAAGCAC	chr6:27114050-27114338(-)$1	288	58	91	15.2372
UCUUCAAUUAGGUCCGAAUUCCCGGCAUAUAAG	chr6:26285601-26285829(-)$1	228	11	44	9.0560
GCUGUGAAGCCCAAGGCCGCUAAGCCCAAGGUU	chr6:26055952-26056192(-)$1	240	109	142	9.2006
CGCCUGCUGCUGCCUGGGGAGUUGGCCAAGCAC	chr6:27100099-27100334(-)$1	235	102	135	15.2372
CGAAGGGCAAGUAACUAUCUGUACUAGUUUGUG	chr6:27101102-27101336(+)$1	234	127	160	10.1031
CGCCUGCUGCUGCCUGGGGAGUUGGCCAAGCAC	chr6:27100038-27100299(-)$1	261	67	100	15.2372
GUACAAGGUUCUGAAGCAGGUCCACCCUGACAC	chr6:27100255-27100499(-)$1	244	95	128	10.0159
GCAAAGUCACCAUCGCACAGGGUGGCGUCCUGC	chr6:27776257-27776474(+)$1	217	25	58	9.0030
GCUGUGAAGCCCAAGGCCGCUAAGCCCAAGGUU	chr6:26055917-26056127(-)$1	210	44	77	9.2006
GCUGCUGCCAGGGGAGCUGGCCAAGCACGCGGU	chr6:27806642-27806870(+)$1	228	99	132	10.2215
CGAAGGGCAAGUAACUAUCUGUACUAGUUUGUG	chr6:27101136-27101368(+)$1	232	93	126	10.1031
AUUGCUCAGGGCGGCGUCCUUCCUAACAUCCAG	chr6:26124687-26124937(+)$1	250	79	112	10.2845
CCGGGGGAGCUGGCCAAGCACGCCGUGUCGGAG	chr6:26158665-26158934(+)$1	269	41	74	11.2794
AGCGACAGGGACGCACUCUUUACGGCUUCGGUG	chr6:26285310-26285531(-)$1	221	78	111	12.0472
GCAAAGUCACCAUCGCACAGGGUGGCGUCCUGC	chr6:27776204-27776455(+)$1	251	78	111	9.0030
AGAGACAGGGACGCACUCUUUACGGCUUCGGCG	chr6:26205025-26205291(+)$1	266	121	154	10.0867
AGUAUACAAGCUCCAAGUAAAUGUGUGCUUAGG	chr6:26216395-26216649(-)$1	254	139	172	11.1310
UUCCGGUCUUAUCUAUGAGGAGACUCGAGGUGU	chr6:26104191-26104413(+)$1	222	124	157	9.4197
GGAGGAGCUAAGCGUCAUCGCAAGGUUUUGCGC	chr6:26285543-26285801(-)$1	258	113	146	9.0120
AAAACUGUCACAGCCAUGGAUGUAGUAUAUGCC	chr6:26104348-26104600(+)$1	252	64	97	12.7084
CGCCUGCUGCUGCCCGGCGAGCUGGCCAAGCAC	chr1:149857670-149857939(-)$1	269	46	79	13.4903
AAGUCACCAUCGCACAGGGCGGUGUCCUGCCCA	chr6:27101085-27101301(+)$1	216	63	96	8.5694
UGGCCAUCCGCAACGACGAGGAGCUAAACAAGU	chr6:26198977-26199246(-)$1	269	31	64	10.1706
UGAUGCUGUGACUUACACGGAGCACGCCAAACG	chr6:26204941-26205205(+)$1	264	134	167	10.1882
GCCAAAGCCCCUAAGCCCAAGGCGGCCAAGCCU	chr6:26234369-26234611(-)$1	242	26	59	9.9510
CAAGCAGCUGGCCACCAAGGCUGCUCGAAAGAG	chr6:26197341-26197588(-)$1	247	163	196	9.3775
GGGCUGAUCACGAAAUAGCGCAUUAGCUCUUUU	chr1:149858918-149859185(-)$1	267	181	214	12.4926
CAAGGCCAAGACCCGCUCUUCUCGGGCCGGGCU	chr6:27775881-27776120(+)$1	239	144	177	9.8548
AGCCCAAGGCAGUUAAGCCGAAGGCGGCAAAGC	chr6:27834471-27834760(-)$1	289	27	60	10.5150
CGCCUGCUGCUUCCCGGAGAGCUGGCCAAGCAC	chr6:26123600-26123855(-)$1	255	20	53	13.2767
GACGAGGAGCUAAAUAAGCUUCUAGGUCGCGUG	chr6:26217459-26217694(+)$1	235	13	46	9.7424
UUCAGAGCCACCCACAUGCGCGCUGAAAAGAUC	chr6:27778110-27778356(+)$1	246	190	223	10.5151
GCUGUGAAGCCCAAGGCCGCUAAGCCCAAGGUU	chr6:26055927-26056132(-)$1	205	49	82	9.2006

#DB
((((..((((....))))..)))))))....))	chr6:27107261-27107520(+)$1	1	87	120	8.2782
((((((.(((......))).)))))))..))))	chr6:26104095-26104349(+)$1	1	67	100	11.6546
(((...(((.(......).)))....)))))))	chr6:26216376-26216595(-)$1	1	139	172	13.6374
.((.(((......))))).))).)))..)))))	chr1:149858807-149859059(+)$1	1	173	206	8.9763
(((...(((((.....)))))..)))))))(((	chr6:27806700-27806930(+)$1	1	41	74	9.9876
((((.(((.((.....)).))).)))...))))	chr6:27861507-27861762(+)$1	1	30	63	15.2372
(..((((((.((....)))))..)))...)))(	chr6:26104270-26104518(+)$1	1	142	175	12.7084
((((.(((.((.....)).))).)))...))))	chr6:27114050-27114338(-)$1	1	58	91	15.2372
((...((((.......))))...)))....)))	chr6:26285601-26285829(-)$1	1	11	44	9.0560
(((.(((((((...(((......)))...))))	chr6:26055952-26056192(-)$1	1	109	142	9.2006
((((.(((.((.....)).))).)))...))))	chr6:27100099-27100334(-)$1	1	102	135	15.2372
(..((.(((.((....)).))).)).)))))))	chr6:27101102-27101336(+)$1	1	127	160	10.1031
((((.(((.((.....)).))).)))...))))	chr6:27100038-27100299(-)$1	1	67	100	15.2372
((.((.(((((((...))))...))).))))))	chr6:27100255-27100499(-)$1	1	95	128	10.0159
(((..((((((.........))))))....)))	chr6:27776257-27776474(+)$1	1	25	58	9.0030
(((.(((((((...(((......)))...))))	chr6:26055917-26056127(-)$1	1	44	77	9.2006
(((...(((((.....)))))..))))((((((	chr6:27806642-27806870(+)$1	1	99	132	10.2215
(..((.(((.((....)).))).)).)))))))	chr6:27101136-27101368(+)$1	1	93	126	10.1031
.(((...(((((...)))))...)))))))).)	chr6:26124687-26124937(+)$1	1	79	112	10.2845
.(((.(..(((.....))).).))).)).).))	chr6:26158665-26158934(+)$1	1	41	74	11.2794
(((...(((((.....)))))...)))))))))	chr6:26285310-26285531(-)$1	1	78	111	12.0472
(((..((((((.........))))))....)))	chr6:27776204-27776455(+)$1	1	78	111	9.0030
((....(((((.....)))))....))))))))	chr6:26205025-26205291(+)$1	1	121	154	10.0867
((((((((.(((...)))...))))))))).))	chr6:26216395-26216649(-)$1	1	139	172	11.1310
(((.((((((.((...)).)))))).)))))))	chr6:26104191-26104413(+)$1	1	124	157	9.4197
.))))))))))))))))..)))))))...))))	chr6:26285543-26285801(-)$1	1	113	146	9.0120
(..((((((.((....)))))..)))...)))(	chr6:26104348-26104600(+)$1	1	64	97	12.7084
((((.((((((....))).))).)))...))))	chr1:149857670-149857939(-)$1	1	46	79	13.4903
..(.((((.((......)).)))).).))))))	chr6:27101085-27101301(+)$1	1	63	96	8.5694
((((..(((.(......).)))))).....)))	chr6:26198977-26199246(-)$1	1	31	64	10.1706
((.(.(((((.....))))).)))))....)))	chr6:26204941-26205205(+)$1	1	134	167	10.1882
((....((((((.......))).)))...))))	chr6:26234369-26234611(-)$1	1	26	59	9.9510
(.(((((((((...))..))))))).)...).)	chr6:26197341-26197588(-)$1	1	163	196	9.3775
(((((((((.(......).).))))))))))).	chr1:149858918-149859185(-)$1	1	181	214	12.4926
(..((..((((.....))))))..)))))))))	chr6:27775881-27776120(+)$1	1	144	177	9.8548
.(((...(((......)))...)))(((...))	chr6:27834471-27834760(-)$1	1	27	60	10.5150
((((.(((.(((....)))))).)))...))))	chr6:26123600-26123855(-)$1	1	20	53	13.2767
(((.(((((((.....)))))))..)))(((((	chr6:26217459-26217694(+)$1	1	13	46	9.7424
(((((.((((......)).)).)))))))))))	chr6:27778110-27778356(+)$1	1	190	223	10.5151
(((.(((((((...(((......)))...))))	chr6:26055927-26056132(-)$1	1	49	82	9.2006

#PSSM
d : 0.27	c : 0.12	g : 0.07	= : 0.07	e : 0.07	a : 0.07	f : 0.07	i : 0.07	[ : 0.02	# : 0.02	" : 0.02	2 : 0.02	! : 0.02	: : 0.02	
c : 0.30	! : 0.15	d : 0.12	g : 0.07	= : 0.07	e : 0.07	f : 0.07	i : 0.07	b : 0.02	[ : 0.02	
c : 0.27	! : 0.12	g : 0.07	= : 0.07	e : 0.07	f : 0.07	i : 0.07	d : 0.05	[ : 0.05	# : 0.05	b : 0.02	" : 0.02	a : 0.02	
c : 0.30	[ : 0.17	" : 0.12	b : 0.10	g : 0.07	! : 0.05	# : 0.05	i : 0.05	f : 0.02	a : 0.02	= : 0.02	
[ : 0.19	" : 0.17	c : 0.15	! : 0.10	b : 0.10	g : 0.07	# : 0.05	i : 0.05	f : 0.05	d : 0.02	= : 0.02	
c : 0.30	" : 0.15	[ : 0.10	f : 0.10	! : 0.07	g : 0.07	d : 0.05	# : 0.05	a : 0.02	i : 0.02	e : 0.02	= : 0.02	
c : 0.45	e : 0.12	f : 0.10	d : 0.07	" : 0.05	! : 0.05	g : 0.05	[ : 0.02	i : 0.02	= : 0.02	b : 0.02	
c : 0.40	d : 0.17	e : 0.15	f : 0.07	= : 0.05	g : 0.05	o : 0.02	! : 0.02	i : 0.02	b : 0.02	
c : 0.30	[ : 0.17	d : 0.15	e : 0.15	f : 0.07	g : 0.05	o : 0.02	= : 0.02	a : 0.02	b : 0.02	
c : 0.17	[ : 0.17	b : 0.17	d : 0.15	e : 0.15	f : 0.07	o : 0.02	p : 0.02	= : 0.02	g : 0.02	
b : 0.24	e : 0.12	d : 0.12	c : 0.12	o : 0.10	a : 0.07	f : 0.05	m : 0.02	p : 0.02	[ : 0.02	= : 0.02	n : 0.02	g : 0.02	
n : 0.30	o : 0.19	b : 0.12	" : 0.07	c : 0.07	m : 0.05	r : 0.05	p : 0.02	d : 0.02	e : 0.02	= : 0.02	l : 0.02	
n : 0.30	o : 0.19	m : 0.17	" : 0.07	l : 0.07	p : 0.05	r : 0.05	d : 0.02	b : 0.02	= : 0.02	
n : 0.30	m : 0.17	o : 0.17	l : 0.12	" : 0.07	p : 0.05	r : 0.05	c : 0.02	= : 0.02	
n : 0.30	o : 0.17	m : 0.15	c : 0.10	l : 0.10	p : 0.05	r : 0.05	d : 0.02	= : 0.02	b : 0.02	
n : 0.27	o : 0.17	c : 0.15	m : 0.12	p : 0.05	l : 0.05	r : 0.05	e : 0.05	d : 0.02	= : 0.02	b : 0.02	
b : 0.27	c : 0.22	e : 0.15	d : 0.10	o : 0.10	r : 0.05	= : 0.02	p : 0.02	2 : 0.02	g : 0.02	
b : 0.30	c : 0.15	e : 0.15	d : 0.10	a : 0.07	o : 0.07	r : 0.05	2 : 0.05	p : 0.02	g : 0.02	
] : 0.32	c : 0.15	e : 0.15	d : 0.07	o : 0.07	2 : 0.05	r : 0.05	g : 0.05	3 : 0.02	b : 0.02	p : 0.02	
c : 0.35	e : 0.15	] : 0.07	d : 0.07	o : 0.07	g : 0.07	r : 0.05	3 : 0.05	2 : 0.02	f : 0.02	a : 0.02	b : 0.02	
c : 0.35	g : 0.12	3 : 0.12	e : 0.10	o : 0.07	f : 0.07	] : 0.05	b : 0.05	a : 0.02	d : 0.02	
c : 0.30	g : 0.12	3 : 0.12	2 : 0.10	o : 0.07	f : 0.07	] : 0.05	4 : 0.02	i : 0.02	d : 0.02	a : 0.02	= : 0.02	b : 0.02	
] : 0.24	g : 0.12	2 : 0.12	3 : 0.10	o : 0.07	f : 0.07	c : 0.07	4 : 0.05	i : 0.05	d : 0.05	= : 0.02	
c : 0.47	g : 0.10	d : 0.10	f : 0.07	4 : 0.05	b : 0.05	i : 0.05	2 : 0.05	3 : 0.02	= : 0.02	
c : 0.50	g : 0.10	d : 0.07	f : 0.07	i : 0.07	4 : 0.05	b : 0.05	] : 0.02	= : 0.02	2 : 0.02	
c : 0.47	] : 0.12	g : 0.10	d : 0.07	i : 0.07	f : 0.05	4 : 0.02	a : 0.02	5 : 0.02	= : 0.02	
3 : 0.32	4 : 0.10	g : 0.07	= : 0.07	a : 0.07	i : 0.07	c : 0.07	d : 0.05	] : 0.05	2 : 0.02	e : 0.02	b : 0.02	5 : 0.02	
3 : 0.35	4 : 0.12	g : 0.12	= : 0.07	c : 0.07	i : 0.07	2 : 0.05	b : 0.05	e : 0.02	f : 0.02	5 : 0.02	
3 : 0.35	4 : 0.12	g : 0.12	= : 0.07	i : 0.07	e : 0.05	f : 0.05	2 : 0.02	c : 0.02	b : 0.02	] : 0.02	5 : 0.02	l : 0.02	
d : 0.32	4 : 0.12	g : 0.12	= : 0.07	c : 0.07	i : 0.07	e : 0.05	f : 0.05	a : 0.02	5 : 0.02	3 : 0.02	l : 0.02	
d : 0.32	f : 0.15	g : 0.12	c : 0.10	= : 0.07	e : 0.05	] : 0.05	i : 0.05	4 : 0.02	a : 0.02	l : 0.02	
d : 0.35	c : 0.17	f : 0.15	g : 0.12	= : 0.07	] : 0.05	h : 0.02	e : 0.02	i : 0.02	
d : 0.37	c : 0.17	f : 0.15	g : 0.10	= : 0.05	e : 0.05	h : 0.02	i : 0.02	C : 0.02	] : 0.02	

#score	435.41323211951976
#seq	40
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_CDS_m3_run2.txt

#BEAR
beeeeebboooooobb]eeee	chr19:2270511-2270780(+)$1	269	175	196	6.3799
ddd[ddddllldddd]dddd3	chr22:39714970-39715194(-)$1	224	100	121	6.4707
===eeeeennnnneeeee333	chr11:116707700-116707974(-)$1	274	53	74	11.0195
ee[ccc[annnnnaccceeee	chr2:216300345-216300618(-)$1	273	64	85	10.9187
ee[bbcccnnnnnccc]bb]e	chr20:307085-307318(-)$1	233	71	92	10.0725
[a[bb[aooooooa]bb]a]b	chr22:19929020-19929366(-)$1	346	134	155	7.2275
$$$eeeeennnnneeeeebb]	chr3:13461567-13461855(-)$1	288	100	121	9.3911
iii[ddddnnnnnddddiiii	chr4:78740075-78740321(-)$1	246	44	65	11.4182
!dddd[bbnnnnnbb]dddd4	chr8:30669826-30670090(-)$1	264	148	169	9.4811
gggggggooooooggggggg:	chr14:94849370-94849659(-)$1	289	246	267	6.5734
hgggggggnnnnnggggggg9	chr3:186330775-186331086(+)$1	311	194	215	9.7440
eeeeecccnnnnnccc]eeee	chr2:21266636-21266901(-)$1	265	211	232	10.6309
ddda[cccnnnnnccc]a]dd	chr17:73774724-73774970(-)$1	246	164	185	10.1723
a"""bb[annnnna]bb333a	chr8:145693805-145694074(+)$1	269	24	45	10.7729
ccc[ddddnnnnndddd]ccc	chr3:13418919-13419161(-)$1	242	167	188	11.5064
e!!ccc[annnnna]ccc444	chr2:21266704-21267036(-)$1	332	16	37	11.5079
ccc[ddddnnnnndddd]ccc	chr3:13418961-13419228(-)$1	267	234	255	11.5064
ccc[ddddnnnnndddd]ccc	chr1:249151853-249152142(-)$1	289	243	264	11.5064
[eeeeeddddllldddd]eee	chr6:31937067-31937359(+)$1	292	28	49	6.8110
####ddddnnnnndddd4444	chr6:31508813-31509030(-)$1	217	52	73	11.9528
b[ffffffnnnnnffffff]b	chr15:66795595-66795798(-)$1	203	71	92	8.9154

#otherMatches

#Seq PSSM
UCAGCCCCGGAUCGGGAGGUU	chr19:2270511-2270780(+)$1	269	175	196	6.3799
GCGGACAGAAACUGUGUGCUG	chr22:39714970-39715194(-)$1	224	100	121	6.4707
AUCUCAGCCCACAGCUGGCCU	chr11:116707700-116707974(-)$1	274	53	74	11.0195
UGCGGGCGUCUCUCCCCCACC	chr2:216300345-216300618(-)$1	273	64	85	10.9187
gcuccucguccuccGACGGUG	chr20:307085-307318(-)$1	233	71	92	10.0725
gcgcAGCAGGUAGGAUGGGGU	chr22:19929020-19929366(-)$1	346	134	155	7.2275
agggucgcgggaggugacgcg	chr3:13461567-13461855(-)$1	288	100	121	9.3911
GCGGCGGGGCUGACCCGCGUC	chr4:78740075-78740321(-)$1	246	44	65	11.4182
CCGCCAUGGACGACAAGGCGU	chr8:30669826-30670090(-)$1	264	148	169	9.4811
GGCUGAGUUCGCCUUCAGCCU	chr14:94849370-94849659(-)$1	289	246	267	6.5734
UGGGGCUGCCACUCAGCCCCA	chr3:186330775-186331086(+)$1	311	194	215	9.7440
CCGGCGGCACGAGGUUGGCCG	chr2:21266636-21266901(-)$1	265	211	232	10.6309
AGGAGGCUAGCGAAGCGUACC	chr17:73774724-73774970(-)$1	246	164	185	10.1723
CGGGCUGGGGUUUUGGGAGGG	chr8:145693805-145694074(+)$1	269	24	45	10.7729
GUUUUUGACAAGUUCAGCAAC	chr3:13418919-13419161(-)$1	242	167	188	11.5064
CCUUUGGACCUUUUGCAAUCC	chr2:21266704-21267036(-)$1	332	16	37	11.5079
GUUUUUGACAAGUUCAGCAAC	chr3:13418961-13419228(-)$1	267	234	255	11.5064
GGUAGUUUGAUGGAGGCAACC	chr1:249151853-249152142(-)$1	289	243	264	11.5064
GAGGUCCAGGUGGCUUGUGGC	chr6:31937067-31937359(+)$1	292	28	49	6.8110
AGAGCUAUGGGAGGUGGACGG	chr6:31508813-31509030(-)$1	217	52	73	11.9528
CAGACAGCCCUAUGCUGUCAG	chr15:66795595-66795798(-)$1	203	71	92	8.9154

#DB
)(((((((......)).))))	chr19:2270511-2270780(+)$1	1	175	196	6.3799
(((.((((...)))).)))).	chr22:39714970-39715194(-)$1	1	100	121	6.4707
((((((((.....)))))...	chr11:116707700-116707974(-)$1	1	53	74	11.0195
((.(((.(.....))))))))	chr2:216300345-216300618(-)$1	1	64	85	10.9187
((.(((((.....))).)).)	chr20:307085-307318(-)$1	1	71	92	10.0725
.(.((.(......).)).).)	chr22:19929020-19929366(-)$1	1	134	155	7.2275
...(((((.....))))))).	chr3:13461567-13461855(-)$1	1	100	121	9.3911
(((.((((.....))))))))	chr4:78740075-78740321(-)$1	1	44	65	11.4182
.((((.((.....)).)))).	chr8:30669826-30670090(-)$1	1	148	169	9.4811
(((((((......))))))).	chr14:94849370-94849659(-)$1	1	246	267	6.5734
((((((((.....))))))).	chr3:186330775-186331086(+)$1	1	194	215	9.7440
((((((((.....))).))))	chr2:21266636-21266901(-)$1	1	211	232	10.6309
((((.(((.....))).).))	chr17:73774724-73774970(-)$1	1	164	185	10.1723
(...((.(.....).))...)	chr8:145693805-145694074(+)$1	1	24	45	10.7729
(((.((((.....)))).)))	chr3:13418919-13419161(-)$1	1	167	188	11.5064
(..(((.(.....).)))...	chr2:21266704-21267036(-)$1	1	16	37	11.5079
(((.((((.....)))).)))	chr3:13418961-13419228(-)$1	1	234	255	11.5064
(((.((((.....)))).)))	chr1:249151853-249152142(-)$1	1	243	264	11.5064
.(((((((((...)))).)))	chr6:31937067-31937359(+)$1	1	28	49	6.8110
....((((.....))))....	chr6:31508813-31509030(-)$1	1	52	73	11.9528
(.((((((.....)))))).)	chr15:66795595-66795798(-)$1	1	71	92	8.9154

#PSSM
e : 0.19	c : 0.14	b : 0.09	d : 0.09	[ : 0.09	= : 0.04	$ : 0.04	i : 0.04	! : 0.04	g : 0.04	h : 0.04	a : 0.04	# : 0.04	
e : 0.23	d : 0.14	c : 0.14	g : 0.09	= : 0.04	a : 0.04	$ : 0.04	i : 0.04	" : 0.04	! : 0.04	# : 0.04	[ : 0.04	
e : 0.14	d : 0.14	[ : 0.14	c : 0.14	g : 0.09	= : 0.04	$ : 0.04	i : 0.04	" : 0.04	! : 0.04	# : 0.04	f : 0.04	
e : 0.23	[ : 0.23	c : 0.09	b : 0.09	g : 0.09	d : 0.04	a : 0.04	" : 0.04	# : 0.04	f : 0.04	
d : 0.33	e : 0.23	b : 0.14	c : 0.09	g : 0.09	[ : 0.04	f : 0.04	
d : 0.28	c : 0.23	e : 0.19	[ : 0.09	g : 0.09	b : 0.04	f : 0.04	
d : 0.33	[ : 0.14	c : 0.14	b : 0.09	e : 0.09	g : 0.09	a : 0.04	f : 0.04	
d : 0.33	a : 0.14	c : 0.14	b : 0.09	e : 0.09	o : 0.09	g : 0.04	f : 0.04	
n : 0.76	o : 0.14	l : 0.04	d : 0.04	
n : 0.76	o : 0.14	l : 0.04	d : 0.04	
n : 0.76	o : 0.14	l : 0.09	
n : 0.76	o : 0.14	d : 0.04	l : 0.04	
n : 0.76	o : 0.14	d : 0.04	l : 0.04	
d : 0.33	a : 0.19	c : 0.14	e : 0.09	g : 0.09	o : 0.04	b : 0.04	f : 0.04	
d : 0.33	c : 0.19	] : 0.14	b : 0.09	e : 0.09	g : 0.09	f : 0.04	
d : 0.28	c : 0.23	b : 0.14	] : 0.09	e : 0.09	g : 0.09	f : 0.04	
d : 0.38	] : 0.19	e : 0.09	c : 0.09	b : 0.09	g : 0.09	f : 0.04	
e : 0.23	] : 0.23	d : 0.09	g : 0.09	b : 0.04	i : 0.04	a : 0.04	3 : 0.04	c : 0.04	4 : 0.04	f : 0.04	
e : 0.19	c : 0.14	d : 0.09	3 : 0.09	b : 0.09	g : 0.09	4 : 0.09	a : 0.04	i : 0.04	] : 0.04	f : 0.04	
e : 0.19	d : 0.14	] : 0.14	c : 0.14	3 : 0.09	g : 0.09	4 : 0.09	b : 0.04	i : 0.04	
e : 0.23	4 : 0.14	c : 0.14	3 : 0.09	b : 0.09	] : 0.04	i : 0.04	: : 0.04	9 : 0.04	d : 0.04	a : 0.04	

#score	203.98006217269054
#seq	21
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_UTR_m1_run2.txt

#BEAR
c!!a[gggggggaooooooa]ggggggga22cccggg	chr19:41770845-41771099(+)$1	254	36	73	10.9336
""ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:90493047-90493348(+)$1	301	90	127	11.1001
$$$eeeee[bbrrrrrrrrrbb]eeeee333gggggg	chr4:763941-764198(-)$1	257	36	73	12.2332
a####eeeee[cccrrrrrrrrrccc]eeeee66666	chr12:123463994-123464266(+)$1	272	117	154	12.0695
eee"""gggggggcccqqqqqqqqccc333ggggggg	chr22:20109971-20110227(+)$1	256	86	123	11.8243
fffeeeee!!ddddcccooooooccc4444dddd]ee	chr3:15901014-15901315(-)$1	301	158	195	12.9160
eeebb[ddddvvvvvvvvvvvvvdddd]bb333eeee	chr6:33168761-33169071(+)$1	310	13	50	12.4064
gggggg[a!!a!!cccnnnnnccc22a22a]gggggg	chr2:132044905-132045160(+)$1	255	146	183	11.1737
"""a!!ccc[ddddllldddd]ccc22a333ffffff	chr1:2325766-2326036(+)$1	270	49	86	10.8090
eeee!!bb[a[a[arrrrrrrrra]a]a]bb22eeee	chr6:34664394-34664666(-)$1	272	101	138	13.3068
:bbffffffdddd!!cccooooooccc4444dddd]f	chr19:50168058-50168449(-)$1	391	309	346	10.7788
::ggggggg####ddddoooooodddd333ggggggg	chr2:55237169-55237424(-)$1	255	94	131	11.7964
bb"""eeeee!!fffffflllffffff4444eeeee2	chr22:50013894-50014168(-)$1	274	133	170	12.5734
eggggggg!!ddddrrrrrrrrrdddd4444gggggg	chr1:2325730-2325966(+)$1	236	143	180	16.7673
bb"""eeeee!!fffffflllffffff4444eeeee2	chr22:50013828-50014094(-)$1	266	59	96	12.5734
iiiiii"""eeeeerrrrrrrrreeeee>>>>>>>>>	chr22:19429491-19429764(-)$1	273	90	127	13.6074
eee[bb####ddddrrrrrrrrrdddd4444bbeeee	chr6:109702652-109702980(-)$1	328	256	293	15.2928
ffffff"""eeeeesssssssssseeeee22ffffff	chr1:2325389-2325643(+)$1	254	138	175	10.7291

#otherMatches

#Seq PSSM
UGACACUCAGUGCAGGGGGGACACUGGGGGAGGGGCC	chr19:41770845-41771099(+)$1	254	36	73	10.9336
gaaguagggguagugggagaaguagagggaguggggg	chr1:90493047-90493348(+)$1	301	90	127	11.1001
GCAGGGUGACAGUUUACAAAUGCCGCCUGAAGCAAAU	chr4:763941-764198(-)$1	257	36	73	12.2332
gggagggagcagcugggcaaggaaguggcuucagagg	chr12:123463994-123464266(+)$1	272	117	154	12.0695
UUGUGGUGUGUUUGUUGAAUUUAAAACCAGAAAUACG	chr22:20109971-20110227(+)$1	256	86	123	11.8243
CUCAGAGGAGGAGGCGGGACCGGCCGGGCACCUCACC	chr3:15901014-15901315(-)$1	301	158	195	12.9160
UCGUAGAGACGAGGGCCCAGAGAGUCUGUAAAGUGGC	chr6:33168761-33169071(+)$1	310	13	50	12.4064
UCUCCUCUUGGCCCUGCCCUACAGAUCAUAAAGGAGA	chr2:132044905-132045160(+)$1	255	146	183	11.1737
CUUGAGGGCGGGAUUGCGUCUGGCCACCUGUUGCCUU	chr1:2325766-2326036(+)$1	270	49	86	10.8090
gggggagAGUGAGUGAGUGGCAGAGUGAGUUUACCCC	chr6:34664394-34664666(-)$1	272	101	138	13.3068
AGGCCGGUCGCGCCCAGGAAAUGCCCUAUACGCGCAG	chr19:50168058-50168449(-)$1	391	309	346	10.7788
GUUUGUGCAGUUACAGCUUUUCUGUUGGUAUGCAUAA	chr2:55237169-55237424(-)$1	255	94	131	11.7964
uggcaccaaggcucacuugggaggugacaagcuuggg	chr22:50013894-50014168(-)$1	274	133	170	12.5734
CCAGUGCUCAcagugaggaugggacuggaaaagcguu	chr1:2325730-2325966(+)$1	236	143	180	16.7673
uggcaccaaggcucacuugggaggugacaagcuuggg	chr22:50013828-50014094(-)$1	266	59	96	12.5734
ucuguuguaguuuggguaaaagacagacauuaaacau	chr22:19429491-19429764(-)$1	273	90	127	13.6074
CUAAGGCUAAACUGGAAGGUAGGUAGUGAAACCUAGG	chr6:109702652-109702980(-)$1	328	256	293	15.2928
GCCUGGCUUUGGCCUAAAUAGGGUGGCCAUUCCAGGU	chr1:2325389-2325643(+)$1	254	138	175	10.7291

#DB
(..(.((((((((......).))))))))..)))(((	chr19:41770845-41771099(+)$1	1	36	73	10.9336
..((((((.............................	chr1:90493047-90493348(+)$1	1	90	127	11.1001
...(((((.((.........)).)))))...))))))	chr4:763941-764198(-)$1	1	36	73	12.2332
(....(((((.(((.........))).))))).....	chr12:123463994-123464266(+)$1	1	117	154	12.0695
(((...((((((((((........)))...)))))))	chr22:20109971-20110227(+)$1	1	86	123	11.8243
)))(((((..(((((((......)))....)))).))	chr3:15901014-15901315(-)$1	1	158	195	12.9160
(((((.((((.............)))).))...))))	chr6:33168761-33169071(+)$1	1	13	50	12.4064
((((((.(..(..(((.....)))..)..).))))))	chr2:132044905-132045160(+)$1	1	146	183	11.1737
...(..(((.((((...)))).)))..)...))))))	chr1:2325766-2326036(+)$1	1	49	86	10.8090
((((..((.(.(.(.........).).).))..))))	chr6:34664394-34664666(-)$1	1	101	138	13.3068
.((((((((((((..(((......)))....)))).)	chr19:50168058-50168449(-)$1	1	309	346	10.7788
..(((((((....((((......))))...)))))))	chr2:55237169-55237424(-)$1	1	94	131	11.7964
((...(((((..((((((...))))))....))))).	chr22:50013894-50014168(-)$1	1	133	170	12.5734
)(((((((..((((.........))))....))))))	chr1:2325730-2325966(+)$1	1	143	180	16.7673
((...(((((..((((((...))))))....))))).	chr22:50013828-50014094(-)$1	1	59	96	12.5734
((((((...(((((.........))))).........	chr22:19429491-19429764(-)$1	1	90	127	13.6074
(((.((....((((.........))))....))))))	chr6:109702652-109702980(-)$1	1	256	293	15.2928
((((((...(((((..........)))))..))))))	chr1:2325389-2325643(+)$1	1	138	175	10.7291

#PSSM
e : 0.27	" : 0.11	f : 0.11	: : 0.11	b : 0.11	c : 0.05	$ : 0.05	a : 0.05	g : 0.05	i : 0.05	
e : 0.22	b : 0.16	" : 0.11	f : 0.11	g : 0.11	! : 0.05	$ : 0.05	# : 0.05	: : 0.05	i : 0.05	
e : 0.22	f : 0.16	g : 0.16	" : 0.16	! : 0.05	$ : 0.05	# : 0.05	b : 0.05	i : 0.05	
f : 0.16	e : 0.16	" : 0.16	g : 0.16	a : 0.11	# : 0.05	b : 0.05	i : 0.05	[ : 0.05	
f : 0.16	" : 0.16	g : 0.16	e : 0.11	b : 0.11	! : 0.11	[ : 0.05	# : 0.05	i : 0.05	
e : 0.27	g : 0.22	f : 0.16	! : 0.11	" : 0.05	[ : 0.05	i : 0.05	b : 0.05	
e : 0.27	g : 0.22	f : 0.11	" : 0.11	d : 0.05	[ : 0.05	c : 0.05	b : 0.05	# : 0.05	
e : 0.27	g : 0.22	f : 0.11	" : 0.11	d : 0.05	a : 0.05	c : 0.05	b : 0.05	# : 0.05	
g : 0.16	e : 0.16	! : 0.16	[ : 0.11	" : 0.11	^ : 0.05	d : 0.05	c : 0.05	f : 0.05	# : 0.05	
e : 0.27	! : 0.16	g : 0.11	d : 0.11	# : 0.11	^ : 0.05	b : 0.05	[ : 0.05	a : 0.05	
d : 0.27	g : 0.11	[ : 0.11	! : 0.11	e : 0.11	^ : 0.05	b : 0.05	v : 0.05	a : 0.05	# : 0.05	
d : 0.27	! : 0.16	g : 0.11	e : 0.11	^ : 0.05	r : 0.05	c : 0.05	v : 0.05	a : 0.05	# : 0.05	
d : 0.27	f : 0.11	e : 0.11	a : 0.05	^ : 0.05	r : 0.05	c : 0.05	g : 0.05	v : 0.05	! : 0.05	[ : 0.05	# : 0.05	
d : 0.27	c : 0.16	f : 0.11	e : 0.11	o : 0.05	^ : 0.05	r : 0.05	v : 0.05	a : 0.05	! : 0.05	
r : 0.33	c : 0.16	f : 0.11	o : 0.05	^ : 0.05	v : 0.05	l : 0.05	! : 0.05	d : 0.05	s : 0.05	
r : 0.33	c : 0.22	f : 0.11	o : 0.05	^ : 0.05	v : 0.05	l : 0.05	d : 0.05	s : 0.05	
r : 0.33	c : 0.11	f : 0.11	o : 0.05	^ : 0.05	q : 0.05	v : 0.05	n : 0.05	l : 0.05	d : 0.05	s : 0.05	
r : 0.33	o : 0.16	f : 0.11	^ : 0.05	q : 0.05	v : 0.05	n : 0.05	d : 0.05	c : 0.05	s : 0.05	
r : 0.33	o : 0.22	l : 0.11	^ : 0.05	q : 0.05	v : 0.05	n : 0.05	d : 0.05	s : 0.05	
r : 0.33	o : 0.16	l : 0.11	a : 0.05	^ : 0.05	q : 0.05	v : 0.05	n : 0.05	d : 0.05	s : 0.05	
r : 0.27	o : 0.16	l : 0.11	] : 0.05	^ : 0.05	b : 0.05	q : 0.05	v : 0.05	n : 0.05	d : 0.05	s : 0.05	
r : 0.27	o : 0.16	f : 0.11	g : 0.05	^ : 0.05	b : 0.05	q : 0.05	v : 0.05	c : 0.05	] : 0.05	s : 0.05	
r : 0.27	o : 0.16	c : 0.11	f : 0.11	g : 0.05	^ : 0.05	] : 0.05	q : 0.05	v : 0.05	s : 0.05	
c : 0.22	d : 0.22	e : 0.11	f : 0.11	g : 0.05	^ : 0.05	q : 0.05	a : 0.05	o : 0.05	s : 0.05	
c : 0.27	d : 0.22	e : 0.16	f : 0.11	g : 0.05	^ : 0.05	2 : 0.05	] : 0.05	
c : 0.22	d : 0.22	e : 0.16	2 : 0.11	f : 0.11	g : 0.05	^ : 0.05	a : 0.05	
d : 0.22	e : 0.16	] : 0.11	c : 0.11	f : 0.11	g : 0.05	^ : 0.05	4 : 0.05	a : 0.05	2 : 0.05	
4 : 0.33	e : 0.22	3 : 0.11	a : 0.11	g : 0.05	^ : 0.05	] : 0.05	2 : 0.05	
4 : 0.33	3 : 0.22	e : 0.11	a : 0.05	^ : 0.05	b : 0.05	2 : 0.05	] : 0.05	> : 0.05	
4 : 0.33	3 : 0.22	2 : 0.11	b : 0.11	^ : 0.05	e : 0.05	a : 0.05	> : 0.05	
4 : 0.27	3 : 0.16	2 : 0.11	g : 0.11	^ : 0.05	e : 0.05	d : 0.05	] : 0.05	b : 0.05	> : 0.05	
g : 0.27	e : 0.16	d : 0.11	f : 0.11	c : 0.05	^ : 0.05	3 : 0.05	2 : 0.05	> : 0.05	b : 0.05	
g : 0.27	d : 0.11	f : 0.11	e : 0.11	c : 0.05	^ : 0.05	6 : 0.05	3 : 0.05	2 : 0.05	> : 0.05	b : 0.05	
g : 0.27	e : 0.27	d : 0.11	f : 0.11	c : 0.05	^ : 0.05	6 : 0.05	> : 0.05	
g : 0.33	e : 0.27	f : 0.11	^ : 0.05	6 : 0.05	] : 0.05	d : 0.05	> : 0.05	
g : 0.33	e : 0.33	f : 0.11	^ : 0.05	6 : 0.05	] : 0.05	> : 0.05	
g : 0.33	e : 0.22	f : 0.16	2 : 0.11	^ : 0.05	6 : 0.05	> : 0.05	

#score	222.89203728556654
#seq	18
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_CDS_m1_run1.txt

#BEAR
ccccccuuuuuuuuuuuuccc]cc	chr20:61536837-61537065(-)$1	228	117	141	23.4427
%%cccwwwwwwwwwwwwwwccc66	chr8:21826881-21827148(+)$1	267	83	107	20.3315
:eeeeeuuuuuuuuuuuueeeee:	chr15:63353727-63354019(+)$1	292	217	241	21.3462
ffffffvvvvvvvvvvvvvfffff	chr16:57241469-57241803(+)$1	334	91	115	22.3474
$eeeeevvvvvvvvvvvvveeeee	chr16:56536214-56536480(-)$1	266	61	85	23.6699
"""dddduuuuuuuuuuuudddd2	chr1:21323983-21324243(-)$1	260	169	193	22.5938
!!ddddyyyyyyyyyyyyyyyydd	chr18:56018101-56018358(+)$1	257	38	62	21.0575
ffffffvvvvvvvvvvvvvfffff	chr20:61594511-61594782(+)$1	271	90	114	22.3474
a!!dddduuuuuuuuuuuudddda	chr5:64859503-64859762(+)$1	259	74	98	22.9109
eeee[bbuuuuuuuuuuuubbeee	chr5:38886195-38886522(+)$1	327	175	199	21.7128
$$eeeeeuuuuuuuuuuuueeeee	chr16:58619262-58619511(-)$1	249	54	78	22.6458
::eeeeeuuuuuuuuuuuueeeee	chr2:32688131-32688400(+)$1	269	223	247	20.9690
ggggggtttttttttttggggggg	chr6:41566423-41566677(+)$1	254	198	222	21.8805
b[dddduuuuuuuuuuuudddd]b	chr18:12986731-12987033(+)$1	302	108	132	22.8003
hhhhhhvvvvvvvvvvvvvhhhhh	chr13:76431935-76432197(+)$1	262	230	254	21.9867
ccc!!bbtttttttttttbb]ccc	chr20:34214157-34214415(-)$1	258	85	109	21.2243
gg[cccvvvvvvvvvvvvvccc]g	chr5:134116718-134116967(+)$1	249	198	222	24.0686
dddeeeeettttttttttteeeee	chr2:220099433-220099695(+)$1	262	175	199	20.7237
ggggggvvvvvvvvvvvvvggggg	chrX:70767595-70767881(+)$1	286	37	61	23.7820
!!ddddtttttttttttddddddd	chr17:62481843-62482096(-)$1	253	118	142	22.2283
###cccvvvvvvvvvvvvvccc44	chr2:209176826-209177106(+)$1	280	189	213	23.9451
fffffavvvvvvvvvvvvva]fff	chr6:145161762-145161984(+)$1	222	170	194	22.7043
ggggggvvvvvvvvvvvvvggggg	chr3:101575796-101576064(+)$1	268	171	195	23.7820
c[cccwwwwwwwwwwwwwwccccc	chr20:43559245-43559494(+)$1	249	129	153	22.5727
ddddddvvvvvvvvvvvvvdddd]	chr17:74326042-74326295(-)$1	253	208	232	23.3183
cccccccuuuuuuuuuuuuccc44	chr16:24788147-24788426(+)$1	279	79	103	22.8348
eeeeewwwwwwwwwwwwwweeeee	chr2:20494153-20494409(-)$1	256	9	33	22.1211
f[eeeeettttttttttteeeeef	chr3:49049574-49049821(+)$1	247	210	234	22.1362
gggggwwwwwwwwwwwwwwggggg	chr14:39746029-39746286(+)$1	257	136	160	22.2942
ffffffvvvvvvvvvvvvvfffff	chr6:41751748-41752008(+)$1	260	196	220	22.3474
d[ddddtttttttttttdddd]dd	chr2:113410351-113410628(+)$1	277	95	119	21.9458
:eeeeevvvvvvvvvvvvveeeee	chr9:96062221-96062475(+)$1	254	113	137	22.9197
gggggyyyyyyyyyyyyyyyyggg	chr17:40721407-40721653(+)$1	246	136	160	21.0880
dd[ccctttttttttttcccdddd	chr5:131046166-131046463(-)$1	297	82	106	22.1646
ee[cccvvvvvvvvvvvvvccc]e	chr7:107642685-107642950(-)$1	265	147	171	23.7754
hh[ccctttttttttttccchhhh	chr5:95226590-95226859(-)$1	269	187	211	21.7075
ggggggtttttttttttggggggg	chr1:155886351-155886612(-)$1	261	216	240	21.8805
cc[ccctttttttttttccc]ccc	chr12:57492543-57492802(-)$1	259	156	180	22.5412
##ddddwwwwwwwwwwwwwwdddd	chr6:167426886-167427215(+)$1	329	180	204	22.3936
feeeeewwwwwwwwwwwwwweeee	chr16:24741464-24741715(+)$1	251	163	187	22.2732
iiiiiiwwwwwwwwwwwwwwiiii	chr10:79799833-79800069(+)$1	236	61	85	22.3358
c"""ddddtttttttttttdddd3	chr13:47286538-47286808(+)$1	270	227	251	20.8759
b[ddddtttttttttttdddd]bb	chr10:5042487-5042741(-)$1	254	16	40	21.3728
eeddddtttttttttttdddd]ee	chr4:128841886-128842117(-)$1	231	19	43	21.8288
gggggguuuuuuuuuuuugggggg	chr2:228195228-228195479(+)$1	251	173	197	23.1294
[ccc[bbuuuuuuuuuuuubb]cc	chr1:97278472-97278745(+)$1	273	124	148	21.8456
"eeeeewwwwwwwwwwwwwweeee	chr20:62595879-62596140(-)$1	261	90	114	22.4838
c[ddddvvvvvvvvvvvvvddddc	chr19:10916483-10916754(+)$1	271	245	269	23.9210
ccc[bbtttttttttttbb]ccc0	chr7:138203811-138204079(+)$1	268	67	91	20.6546
======vvvvvvvvvvvvv=====	chr6:150048184-150048448(-)$1	264	93	117	23.7828
:eeeeewwwwwwwwwwwwwweeee	chr6:117898486-117898745(-)$1	259	136	160	21.5598
eeeyyyyyyyyyyyyyyyyeeeee	chr1:154227205-154227460(+)$1	255	84	108	20.3935
ddddyyyyyyyyyyyyyyyydddd	chr17:73236351-73236603(-)$1	252	87	111	20.3945
!!eeeeeuuuuuuuuuuuueeeee	chrX:128615017-128615260(-)$1	243	75	99	23.1718
c[eeeeettttttttttteeeee]	chr16:28847943-28848232(+)$1	289	127	151	22.3870
gggggguuuuuuuuuuuugggggg	chr10:121341985-121342230(-)$1	245	185	209	23.1294
##eeeeettttttttttteeeee2	chr6:56964131-56964396(+)$1	265	73	97	22.1043
cc[ccctttttttttttccc]ccc	chr5:72359550-72359829(+)$1	279	122	146	22.5412
hhhhhhuuuuuuuuuuuuhhhhhh	chr6:32943918-32944191(+)$1	273	72	96	21.1086
&&dddduuuuuuuuuuuudddd66	chr6:31500587-31500813(-)$1	226	112	136	21.0738
c!!ccctttttttttttccc22cc	chr1:71532464-71532725(-)$1	261	13	37	22.3584
g!!cccuuuuuuuuuuuuccc22g	chr6:36507843-36508092(-)$1	249	216	240	23.3638
c!!cccyyyyyyyyyyyyyyyycc	chr17:57915602-57915855(+)$1	253	156	180	21.3054
::ddddwwwwwwwwwwwwwwdddd	chr10:121336102-121336372(-)$1	270	44	68	20.3771
ggggggyyyyyyyyyyyyyyyygg	chr12:57883875-57884129(+)$1	254	138	162	20.8929
"""cccvvvvvvvvvvvvvccc55	chr10:21970132-21970412(+)$1	280	59	83	22.4925
h[ddddtttttttttttdddd]hh	chr2:198283175-198283437(-)$1	262	104	128	21.7448

#otherMatches

#Seq PSSM
GGUAAGUAUUCGUAUUCUCUUCAU	chr20:61536837-61537065(-)$1	228	117	141	23.4427
UUAAGUCCUUUUUCCCUCUCUUUU	chr8:21826881-21827148(+)$1	267	83	107	20.3315
UGUGACGAACAACUUGAAGUCACU	chr15:63353727-63354019(+)$1	292	217	241	21.3462
CCGGGAUUGUCGUCUCUCUUCCUG	chr16:57241469-57241803(+)$1	334	91	115	22.3474
AUGACCUAAAAGUAUACCUGGUUA	chr16:56536214-56536480(-)$1	266	61	85	23.6699
UCACUAUCACCCUUAACUAAUAGA	chr1:21323983-21324243(-)$1	260	169	193	22.5938
AUAGUUUUUAAAUGUUGCCUUUGA	chr18:56018101-56018358(+)$1	257	38	62	21.0575
GUUUGAAACCGUUGCUCCCUCAGA	chr20:61594511-61594782(+)$1	271	90	114	22.3474
CUAACAUUUUCCUAUUCUUAUGUG	chr5:64859503-64859762(+)$1	259	74	98	22.9109
CUGUAGAUCUUUGCCUCAUUCACA	chr5:38886195-38886522(+)$1	327	175	199	21.7128
GUUUGUUUUUAAUUAGUAUAGCAG	chr16:58619262-58619511(-)$1	249	54	78	22.6458
CUUUGCAGUCUCUCUCUCAUGCAA	chr2:32688131-32688400(+)$1	269	223	247	20.9690
CUCCGGAAGACAGGGACCUGGAGG	chr6:41566423-41566677(+)$1	254	198	222	21.8805
uuccugucuucauuguuuCAGGUA	chr18:12986731-12987033(+)$1	302	108	132	22.8003
UUUUUUGCUUUUUUUUUAAAAAAA	chr13:76431935-76432197(+)$1	262	230	254	21.9867
CCACUGACUUUUCCCUUUUCUUGG	chr20:34214157-34214415(-)$1	258	85	109	21.2243
AUGACCAGGAUGCCAUGGAGGUGA	chr5:134116718-134116967(+)$1	249	198	222	24.0686
GGGGACUCUGGAUCUUUGUGAGUC	chr2:220099433-220099695(+)$1	262	175	199	20.7237
AGAAGGAAUAAUGAUAUCACCUUC	chrX:70767595-70767881(+)$1	286	37	61	23.7820
AUGGACGAAAAAAUGUGGUUCCUU	chr17:62481843-62482096(-)$1	253	118	142	22.2283
AAAGGUAAUUUUAUAAAaagcugu	chr2:209176826-209177106(+)$1	280	189	213	23.9451
UGGAGCAGAUUCACAGCACGUUUC	chr6:145161762-145161984(+)$1	222	170	194	22.7043
CUGGAACUCAUUCGCCUCUUUUUG	chr3:101575796-101576064(+)$1	268	171	195	23.7820
CCUGCCCGCAACUCCCACCGCAGC	chr20:43559245-43559494(+)$1	249	129	153	22.5727
GUGCUCCCGAAGUCAGAAUGAGCU	chr17:74326042-74326295(-)$1	253	208	232	23.3183
CCACCCCUUUUCUUUUGUUGGGAU	chr16:24788147-24788426(+)$1	279	79	103	22.8348
AAGACAUGUUCUUCUCUAAGUCUU	chr2:20494153-20494409(-)$1	256	9	33	22.1211
GUGCAGGAGAGGAUUGUGUCUGCU	chr3:49049574-49049821(+)$1	247	210	234	22.1362
GACCAGAUUCUAAUCUUUAUGGUU	chr14:39746029-39746286(+)$1	257	136	160	22.2942
UCCUGCAGCAACUCCCUCCGCAGG	chr6:41751748-41752008(+)$1	260	196	220	22.3474
ACCCCUUUUUGCUUUACAGGGCUG	chr2:113410351-113410628(+)$1	277	95	119	21.9458
UGGACGGUUUACCACCCAACGUCU	chr9:96062221-96062475(+)$1	254	113	137	22.9197
UUUGCACAAGGAGAAGAAAAAGCA	chr17:40721407-40721653(+)$1	246	136	160	21.0880
UGUGUAUUUUACGUUUUUGCCAUG	chr5:131046166-131046463(-)$1	297	82	106	22.1646
GAAUGGAGAAGCCUUGAAACCACU	chr7:107642685-107642950(-)$1	265	147	171	23.7754
AAACUAAAUAUUUGAAAUAGUUCU	chr5:95226590-95226859(-)$1	269	187	211	21.7075
CAAAUGUAUUCAGAUGUUAUUUGU	chr1:155886351-155886612(-)$1	261	216	240	21.8805
CAUGGUGCCUUCUUAUGACCUUGG	chr12:57492543-57492802(-)$1	259	156	180	22.5412
GAGGGCAGAGGAGAAAAGCAGCCU	chr6:167426886-167427215(+)$1	329	180	204	22.3936
UGGGCGAGCUUUCCGUCUCCCGCC	chr16:24741464-24741715(+)$1	251	163	187	22.2732
AAGGGACUAUUAAUGAAAUCUUUC	chr10:79799833-79800069(+)$1	236	61	85	22.3358
AUAACUCAUUGCUUUCUCUUGAGC	chr13:47286538-47286808(+)$1	270	227	251	20.8759
AUCAAAUUAAUUUCACUUUUGUUC	chr10:5042487-5042741(-)$1	254	16	40	21.3728
AGAAAUGAUUCUUGUAAGUUUGCU	chr4:128841886-128842117(-)$1	231	19	43	21.8288
UCAGUACGAAAUGGAAUAUACUGA	chr2:228195228-228195479(+)$1	251	173	197	23.1294
AGAAGAGGAUCUACGAACACUGUU	chr1:97278472-97278745(+)$1	273	124	148	21.8456
ACCUGCCCAAUUCCACCCAAGCAG	chr20:62595879-62596140(-)$1	261	90	114	22.4838
CCUGUGUAAAGCCCCACCCCACAG	chr19:10916483-10916754(+)$1	271	245	269	23.9210
AUUUACUAUUCAAUUAUGUUAAUU	chr7:138203811-138204079(+)$1	268	67	91	20.6546
CCUUUUCUUUUUUUCUCCCAGGAG	chr6:150048184-150048448(-)$1	264	93	117	23.7828
UAAGUAUAUUGUUUCUGUUUUGCU	chr6:117898486-117898745(-)$1	259	136	160	21.5598
CUGUUUUUUUUUUUUUUACCAGAA	chr1:154227205-154227460(+)$1	255	84	108	20.3935
CCUGUUUUCUUCUCUAUUGUCAGG	chr17:73236351-73236603(-)$1	252	87	111	20.3945
UUGUUGUUGUUUGUUGUGUAUAGC	chrX:128615017-128615260(-)$1	243	75	99	23.1718
GCUCCCCUUCCACCCCCCGGGGAA	chr16:28847943-28848232(+)$1	289	127	151	22.3870
UUUGUGGAAUUUUAUGAACACAGA	chr10:121341985-121342230(-)$1	245	185	209	23.1294
GGAAUAAAAACUGCAAGCUUAUUG	chr6:56964131-56964396(+)$1	265	73	97	22.1043
CCCACAACUCCUCUUUCUGUAGGC	chr5:72359550-72359829(+)$1	279	122	146	22.5412
AAGAGAAUCAAACUACACUUUUUU	chr6:32943918-32944191(+)$1	273	72	96	21.1086
uccucccccccAGCCAAUGGAGAU	chr6:31500587-31500813(-)$1	226	112	136	21.0738
AAAUCCUGUUUAUUUUUGGAGCUA	chr1:71532464-71532725(-)$1	261	13	37	22.3584
UCGCUCAACAUGAAGAACGAGAAA	chr6:36507843-36508092(-)$1	249	216	240	23.3638
GUAAGACUUUAAUCCGGUUUCUUC	chr17:57915602-57915855(+)$1	253	156	180	21.3054
CCCACUCUUUCUUCAUAUACGGUG	chr10:121336102-121336372(-)$1	270	44	68	20.3771
GGUUCCAGACACUGAGUACCCAGG	chr12:57883875-57884129(+)$1	254	138	162	20.8929
UAUCUCUUUUUUUACCCUUGAGUC	chr10:21970132-21970412(+)$1	280	59	83	22.4925
UGUUGCUGUUCUUUUCUGCAGGAG	chr2:198283175-198283437(-)$1	262	104	128	21.7448

#DB
((((((............))).))	chr20:61536837-61537065(-)$1	1	117	141	23.4427
..(((..............)))..	chr8:21826881-21827148(+)$1	1	83	107	20.3315
.(((((............))))).	chr15:63353727-63354019(+)$1	1	217	241	21.3462
((((((.............)))))	chr16:57241469-57241803(+)$1	1	91	115	22.3474
.(((((.............)))))	chr16:56536214-56536480(-)$1	1	61	85	23.6699
...((((............)))).	chr1:21323983-21324243(-)$1	1	169	193	22.5938
..((((................))	chr18:56018101-56018358(+)$1	1	38	62	21.0575
((((((.............)))))	chr20:61594511-61594782(+)$1	1	90	114	22.3474
(..((((............)))))	chr5:64859503-64859762(+)$1	1	74	98	22.9109
((((.((............)))))	chr5:38886195-38886522(+)$1	1	175	199	21.7128
..(((((............)))))	chr16:58619262-58619511(-)$1	1	54	78	22.6458
..(((((............)))))	chr2:32688131-32688400(+)$1	1	223	247	20.9690
((((((...........)))))))	chr6:41566423-41566677(+)$1	1	198	222	21.8805
(.((((............)))).)	chr18:12986731-12987033(+)$1	1	108	132	22.8003
((((((.............)))))	chr13:76431935-76432197(+)$1	1	230	254	21.9867
(((..((...........)).)))	chr20:34214157-34214415(-)$1	1	85	109	21.2243
((.(((.............))).)	chr5:134116718-134116967(+)$1	1	198	222	24.0686
((((((((...........)))))	chr2:220099433-220099695(+)$1	1	175	199	20.7237
((((((.............)))))	chrX:70767595-70767881(+)$1	1	37	61	23.7820
..((((...........)))))))	chr17:62481843-62482096(-)$1	1	118	142	22.2283
...(((.............)))..	chr2:209176826-209177106(+)$1	1	189	213	23.9451
((((((.............).)))	chr6:145161762-145161984(+)$1	1	170	194	22.7043
((((((.............)))))	chr3:101575796-101576064(+)$1	1	171	195	23.7820
(.(((..............)))))	chr20:43559245-43559494(+)$1	1	129	153	22.5727
((((((.............)))).	chr17:74326042-74326295(-)$1	1	208	232	23.3183
(((((((............)))..	chr16:24788147-24788426(+)$1	1	79	103	22.8348
(((((..............)))))	chr2:20494153-20494409(-)$1	1	9	33	22.1211
(.(((((...........))))))	chr3:49049574-49049821(+)$1	1	210	234	22.1362
(((((..............)))))	chr14:39746029-39746286(+)$1	1	136	160	22.2942
((((((.............)))))	chr6:41751748-41752008(+)$1	1	196	220	22.3474
(.((((...........)))).))	chr2:113410351-113410628(+)$1	1	95	119	21.9458
.(((((.............)))))	chr9:96062221-96062475(+)$1	1	113	137	22.9197
(((((................)))	chr17:40721407-40721653(+)$1	1	136	160	21.0880
((.(((...........)))))))	chr5:131046166-131046463(-)$1	1	82	106	22.1646
((.(((.............))).)	chr7:107642685-107642950(-)$1	1	147	171	23.7754
((.(((...........)))))))	chr5:95226590-95226859(-)$1	1	187	211	21.7075
((((((...........)))))))	chr1:155886351-155886612(-)$1	1	216	240	21.8805
((.(((...........))).)))	chr12:57492543-57492802(-)$1	1	156	180	22.5412
..((((..............))))	chr6:167426886-167427215(+)$1	1	180	204	22.3936
)(((((..............))))	chr16:24741464-24741715(+)$1	1	163	187	22.2732
((((((..............))))	chr10:79799833-79800069(+)$1	1	61	85	22.3358
(...((((...........)))).	chr13:47286538-47286808(+)$1	1	227	251	20.8759
(.((((...........)))).))	chr10:5042487-5042741(-)$1	1	16	40	21.3728
((((((...........)))).))	chr4:128841886-128842117(-)$1	1	19	43	21.8288
((((((............))))))	chr2:228195228-228195479(+)$1	1	173	197	23.1294
.(((.((............)).))	chr1:97278472-97278745(+)$1	1	124	148	21.8456
.(((((..............))))	chr20:62595879-62596140(-)$1	1	90	114	22.4838
(.((((.............)))))	chr19:10916483-10916754(+)$1	1	245	269	23.9210
(((.((...........)).))).	chr7:138203811-138204079(+)$1	1	67	91	20.6546
((((((.............)))))	chr6:150048184-150048448(-)$1	1	93	117	23.7828
.(((((..............))))	chr6:117898486-117898745(-)$1	1	136	160	21.5598
(((................)))))	chr1:154227205-154227460(+)$1	1	84	108	20.3935
((((................))))	chr17:73236351-73236603(-)$1	1	87	111	20.3945
..(((((............)))))	chrX:128615017-128615260(-)$1	1	75	99	23.1718
(.(((((...........))))).	chr16:28847943-28848232(+)$1	1	127	151	22.3870
((((((............))))))	chr10:121341985-121342230(-)$1	1	185	209	23.1294
..(((((...........))))).	chr6:56964131-56964396(+)$1	1	73	97	22.1043
((.(((...........))).)))	chr5:72359550-72359829(+)$1	1	122	146	22.5412
((((((............))))))	chr6:32943918-32944191(+)$1	1	72	96	21.1086
..((((............))))..	chr6:31500587-31500813(-)$1	1	112	136	21.0738
(..(((...........)))..))	chr1:71532464-71532725(-)$1	1	13	37	22.3584
(..(((............)))..)	chr6:36507843-36508092(-)$1	1	216	240	23.3638
(..(((................))	chr17:57915602-57915855(+)$1	1	156	180	21.3054
..((((..............))))	chr10:121336102-121336372(-)$1	1	44	68	20.3771
((((((................))	chr12:57883875-57884129(+)$1	1	138	162	20.8929
...(((.............)))..	chr10:21970132-21970412(+)$1	1	59	83	22.4925
(.((((...........)))).))	chr2:198283175-198283437(-)$1	1	104	128	21.7448

#PSSM
c : 0.17	g : 0.16	f : 0.08	: : 0.07	e : 0.07	d : 0.07	h : 0.05	" : 0.04	! : 0.04	# : 0.04	$ : 0.02	b : 0.02	% : 0.01	a : 0.01	i : 0.01	[ : 0.01	= : 0.01	& : 0.01	
e : 0.16	g : 0.14	[ : 0.11	c : 0.10	! : 0.10	f : 0.05	d : 0.05	" : 0.04	h : 0.04	# : 0.04	: : 0.02	% : 0.01	$ : 0.01	i : 0.01	= : 0.01	& : 0.01	
e : 0.22	d : 0.20	g : 0.13	c : 0.10	[ : 0.08	f : 0.05	! : 0.05	" : 0.04	h : 0.02	# : 0.01	i : 0.01	= : 0.01	
c : 0.23	e : 0.22	d : 0.22	g : 0.13	f : 0.05	h : 0.02	! : 0.01	i : 0.01	" : 0.01	[ : 0.01	= : 0.01	y : 0.01	
c : 0.22	d : 0.22	e : 0.20	g : 0.13	f : 0.05	[ : 0.02	h : 0.02	y : 0.02	! : 0.01	i : 0.01	b : 0.01	= : 0.01	
d : 0.22	c : 0.19	e : 0.19	g : 0.10	w : 0.05	b : 0.05	f : 0.04	y : 0.04	h : 0.02	a : 0.01	i : 0.01	= : 0.01	
v : 0.23	t : 0.19	w : 0.14	u : 0.11	e : 0.10	y : 0.08	d : 0.04	b : 0.04	c : 0.01	
t : 0.25	u : 0.23	v : 0.23	w : 0.14	y : 0.08	e : 0.01	d : 0.01	
t : 0.28	u : 0.23	v : 0.23	w : 0.14	y : 0.08	
t : 0.28	u : 0.23	v : 0.23	w : 0.14	y : 0.08	
t : 0.28	u : 0.23	v : 0.23	w : 0.14	y : 0.08	
t : 0.28	u : 0.23	v : 0.23	w : 0.14	y : 0.08	
t : 0.28	u : 0.23	v : 0.23	w : 0.14	y : 0.08	
t : 0.28	u : 0.23	v : 0.23	w : 0.14	y : 0.08	
t : 0.28	u : 0.23	v : 0.23	w : 0.14	y : 0.08	
t : 0.28	u : 0.23	v : 0.23	w : 0.14	y : 0.08	
t : 0.28	u : 0.23	v : 0.23	w : 0.14	y : 0.08	
u : 0.23	v : 0.23	w : 0.14	y : 0.08	t : 0.08	d : 0.07	c : 0.07	g : 0.02	b : 0.01	
v : 0.23	w : 0.14	u : 0.11	c : 0.10	d : 0.10	y : 0.08	e : 0.05	g : 0.05	b : 0.02	t : 0.02	h : 0.01	
c : 0.20	e : 0.17	d : 0.17	g : 0.10	w : 0.08	y : 0.07	f : 0.04	b : 0.04	h : 0.02	a : 0.01	] : 0.01	= : 0.01	
d : 0.23	e : 0.22	c : 0.14	g : 0.10	y : 0.05	] : 0.05	f : 0.04	h : 0.04	b : 0.02	i : 0.01	= : 0.01	2 : 0.01	
e : 0.23	d : 0.17	c : 0.16	g : 0.11	] : 0.08	f : 0.05	y : 0.04	h : 0.04	2 : 0.02	i : 0.01	= : 0.01	
e : 0.25	d : 0.17	c : 0.13	g : 0.13	f : 0.05	h : 0.05	] : 0.04	6 : 0.02	4 : 0.02	i : 0.01	b : 0.01	= : 0.01	2 : 0.01	5 : 0.01	
e : 0.20	g : 0.16	c : 0.13	d : 0.10	f : 0.07	h : 0.05	6 : 0.02	2 : 0.02	b : 0.02	4 : 0.02	] : 0.02	: : 0.01	a : 0.01	i : 0.01	3 : 0.01	0 : 0.01	= : 0.01	5 : 0.01	

#score	1487.4478057791284
#seq	67
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_CDS_m2_run1.txt

#BEAR
c[ddddvvvvvvvvvvvvvdddd]c	chr6:26156696-26156907(+)$1	211	136	161	23.4872
c[ddddtttttttttttddddccc4	chr7:148427054-148427357(+)$1	303	188	213	21.6678
e[bbwwwwwwwwwwwwwwbb]eeee	chrX:153599155-153599420(-)$1	265	226	251	21.8444
da[bbvvvvvvvvvvvvvbb]a]dd	chr19:13264176-13264423(+)$1	247	179	204	22.4732
hhhhhhvvvvvvvvvvvvvhhhhhh	chr17:43012640-43012882(-)$1	242	141	166	21.5158
efffffftttttttttttffffffJ	chr2:152266795-152267044(+)$1	249	97	122	19.8616
ddddwwwwwwwwwwwwwwdddd>>>	chr5:40764959-40765183(-)$1	224	29	54	20.7993
!cccwwwwwwwwwwwwwwccc]eee	chr17:7405158-7405453(+)$1	295	31	56	22.0877
eeee[auuuuuuuuuuuua]eeeee	chr4:6925729-6925980(+)$1	251	68	93	24.2358
ccddddvvvvvvvvvvvvvdddd33	chr12:110765635-110765901(+)$1	266	148	173	23.4655
fcccyyyyyyyyyyyyyyyyccc33	chr3:37034397-37034618(-)$1	221	178	203	20.6661
FFdddduuuuuuuuuuuuddddddd	chr1:8418724-8418984(-)$1	260	130	155	21.9987
!eeeeewwwwwwwwwwwwwweeeee	chr12:122958104-122958342(-)$1	238	186	211	22.8587
gggggggtttttttttttggggggg	chr19:42777986-42778235(+)$1	249	25	50	22.1172
dddd[bbtttttttttttbb]dddd	chr16:2285083-2285331(+)$1	248	200	225	21.8213
gggggggtttttttttttggggggg	chr4:1725365-1725592(+)$1	227	191	216	22.1172
eeddddvvvvvvvvvvvvvdddd]e	chr19:54972477-54972694(+)$1	217	48	73	23.4499
b!!cccwwwwwwwwwwwwwwccc22	chr9:131456197-131456422(+)$1	225	115	140	21.9241
:eeeeevvvvvvvvvvvvveeeee:	chr1:204379487-204379702(-)$1	215	87	112	22.3679
$$ddddvvvvvvvvvvvvvdddd66	chr2:71653658-71653985(+)$1	327	225	250	21.9334
hhhcccvvvvvvvvvvvvvccc333	chr3:33840100-33840333(+)$1	233	134	159	23.3676
iibb[bbtttttttttttbb]bb22	chr1:113460312-113460576(-)$1	264	98	123	21.0595
b[eeeeettttttttttteeeee]b	chr18:3457493-3457764(+)$1	271	33	58	22.2325
ffffffvvvvvvvvvvvvvffffff	chr11:62437342-62437604(-)$1	262	133	158	22.6580
dddd[bbtttttttttttbb]dddd	chr16:2052225-2052484(-)$1	259	219	244	21.8213
c!!ccctttttttttttccc4444c	chrX:30872180-30872483(-)$1	303	147	172	22.1365
:eeeeettttttttttteeeee:cc	chr16:89661762-89661975(+)$1	213	8	33	20.2873
&eeeeeuuuuuuuuuuuueeeeedd	chr16:70286566-70286790(-)$1	224	145	170	22.9922
ccc[bbwwwwwwwwwwwwwwbbccc	chr1:150483998-150484294(+)$1	296	142	167	21.0309
!!bbwwwwwwwwwwwwwwbb333cc	chr8:23423712-23423928(+)$1	216	113	138	21.3838
bbyyyyyyyyyyyyyyyybb]eeee	chr3:128204926-128205178(-)$1	252	208	233	19.5761
====[bbtttttttttttbb]====	chr6:32939326-32939558(+)$1	232	88	113	22.5139
ggggggvvvvvvvvvvvvvgggggg	chr22:41833025-41833277(-)$1	252	29	54	23.6732
eeeeewwwwwwwwwwwwwweeeeeg	chr12:124221638-124221922(+)$1	284	43	68	22.8704
ffffffvvvvvvvvvvvvvffffff	chr1:1509773-1510058(-)$1	285	242	267	22.6580
iiiiyyyyyyyyyyyyyyyyiiiii	chr4:15627326-15627576(-)$1	250	141	166	20.8040
ceeeeewwwwwwwwwwwwwweeeee	chr16:68156296-68156562(+)$1	266	179	204	22.7660
b[dddduuuuuuuuuuuuddddbb2	chr6:36936599-36936822(-)$1	223	28	53	22.6087
[fffffftttttttttttffffff]	chr2:220082879-220083134(-)$1	255	181	206	21.4814
bb[cccuuuuuuuuuuuuccc]bbe	chr1:52498551-52498809(-)$1	258	53	78	22.6850
eee[bbuuuuuuuuuuuubb]eeee	chr1:1684252-1684548(-)$1	296	201	226	23.7514
c[dddduuuuuuuuuuuuddddccc	chr19:5790126-5790383(-)$1	257	50	75	23.2106
hhhhhhuuuuuuuuuuuuhhhhhhh	chr8:144776438-144776699(+)$1	261	216	241	21.0557
[eeeeettttttttttteeeeebb4	chr6:27107021-27107272(+)$1	251	51	76	21.8054
eee[bbuuuuuuuuuuuubb]eeee	chr15:51790881-51791249(-)$1	368	35	60	23.7514
!eeeeewwwwwwwwwwwwwweeeee	chr1:47685359-47685641(-)$1	282	196	221	22.8587
!eeeeevvvvvvvvvvvvveeeee]	chrX:119694090-119694406(-)$1	316	263	288	24.2727
:eeeeevvvvvvvvvvvvveeeee:	chr12:122260447-122260722(+)$1	275	29	54	22.3679
ee"""bbtttttttttttbb333ee	chr17:26919625-26919878(-)$1	253	66	91	21.9100
eeeeevvvvvvvvvvvvveeeeeff	chr5:175933841-175934098(+)$1	257	28	53	23.4920
gggggggtttttttttttggggggg	chr22:20074083-20074330(+)$1	247	73	98	22.1172
b[cccvvvvvvvvvvvvvccc]bbe	chr7:107398826-107399086(+)$1	260	37	62	22.9252
eeeebbuuuuuuuuuuuubb]eeee	chr1:67519365-67519664(-)$1	299	138	163	23.8336
ffffyyyyyyyyyyyyyyyyfffff	chr6:30882527-30882768(+)$1	241	106	131	20.0883
ggggggvvvvvvvvvvvvvgggggg	chr22:45718974-45719226(+)$1	252	6	31	23.6732
ee[cccuuuuuuuuuuuuccc]eee	chr17:57776125-57776373(-)$1	248	91	116	23.8216
b!!bbvvvvvvvvvvvvvbb22bb]	chr1:44442740-44443030(+)$1	290	171	196	22.0401
gggggguuuuuuuuuuuuggggggg	chr2:54197610-54197839(-)$1	229	74	99	23.4259
ddddwwwwwwwwwwwwwwdddd444	chr3:14711340-14711613(+)$1	273	58	83	21.3639
!!eeeeettttttttttteeeee22	chr2:27607698-27607918(-)$1	220	17	42	22.4783
fffffvvvvvvvvvvvvvffffffe	chr12:123087517-123087793(+)$1	276	205	230	22.4848
!eeeeettttttttttteeeeeeee	chr4:113568307-113568609(+)$1	302	194	219	22.4631
b[ddddwwwwwwwwwwwwwwddddb	chr1:113460376-113460630(-)$1	254	177	202	21.5856
eeeeyyyyyyyyyyyyyyyyeeeee	chr11:57563924-57564234(+)$1	310	254	279	21.3186

#otherMatches

#Seq PSSM
ACGUGGAGAAGAACAACAGCCGCAU	chr6:26156696-26156907(+)$1	211	136	161	23.4872
ACGGCCUGAAGCAGAUUGGCCUGGA	chr7:148427054-148427357(+)$1	303	188	213	21.6678
UGCGUCCUUCCAUCUCCCCGGGCGG	chrX:153599155-153599420(-)$1	265	226	251	21.8444
GCCGCAAACGACGCAGCAGCAGCCU	chr19:13264176-13264423(+)$1	247	179	204	22.4732
GCUGGGAAGGGAGGGGGACCCCGGC	chr17:43012640-43012882(-)$1	242	141	166	21.5158
CACUGGAUUUUCUCCUCUUCCGGUU	chr2:152266795-152267044(+)$1	249	97	122	19.8616
UCUCAUAAUAGAUAACAGGAGAAUA	chr5:40764959-40765183(-)$1	224	29	54	20.7993
UCAGUAUACACCACCUUUCUGUUUC	chr17:7405158-7405453(+)$1	295	31	56	22.0877
AAAUUGAAAAUAUUGGGGCCAUUUA	chr4:6925729-6925980(+)$1	251	68	93	24.2358
ACUGGUACACUUACAACAAACCAGA	chr12:110765635-110765901(+)$1	266	148	173	23.4655
CCGCCUCAUCGUAGCUACCCGCGAA	chr3:37034397-37034618(-)$1	221	178	203	20.6661
GCCCGACACACCUGCCCUUCGGACU	chr1:8418724-8418984(-)$1	260	130	155	21.9987
CGCCAUUUGAAUUUGAGAAUAUGGC	chr12:122958104-122958342(-)$1	238	186	211	22.8587
UCUGGAAUCCUACCCACCUUCCAGA	chr19:42777986-42778235(+)$1	249	25	50	22.1172
UCGUGCAGAACGUCACCAUGGACGA	chr16:2285083-2285331(+)$1	248	200	225	21.8213
GGACUGGAAAACUCACACCCGGUCU	chr4:1725365-1725592(+)$1	227	191	216	22.1172
GGGGGCACCCAGCAAGCCCGCCCAC	chr19:54972477-54972694(+)$1	217	48	73	23.4499
gaaggagagguaaaagaaAAUUUGG	chr9:131456197-131456422(+)$1	225	115	140	21.9241
AAGGGGCAAGAUUUACCCACCCCUG	chr1:204379487-204379702(-)$1	215	87	112	22.3679
GAACUAAAUAUGGAAGAAAUGGUAA	chr2:71653658-71653985(+)$1	327	225	250	21.9334
CUCGGUGCAGCUGAAAAAGACCUCA	chr3:33840100-33840333(+)$1	233	134	159	23.3676
UUGCUACUAAACUGCUGUGUUGCUG	chr1:113460312-113460576(-)$1	264	98	123	21.0595
AGAGGAGACCCCAUUUCAUUCCUGU	chr18:3457493-3457764(+)$1	271	33	58	22.2325
UGGGCUUUGGACUAGAAAUAGCCCA	chr11:62437342-62437604(-)$1	262	133	158	22.6580
GAACCGCCACAUCGACCUGCAGUUC	chr16:2052225-2052484(-)$1	259	219	244	21.8213
UAUUCAGCCCAUUUCAGUGAUACCA	chrX:30872180-30872483(-)$1	303	147	172	22.1365
CCAGCAAUACUACAUCCUGCUGAUC	chr16:89661762-89661975(+)$1	213	8	33	20.2873
CCUCGGGGAUGUAAAGAACUGAGUG	chr16:70286566-70286790(-)$1	224	145	170	22.9922
UGGACAAUAUCAAGAACAUCUGCCA	chr1:150483998-150484294(+)$1	296	142	167	21.0309
AAGGAAACAGCCACCUAGCCAACGG	chr8:23423712-23423928(+)$1	216	113	138	21.3838
CUCCCUCACCCCUACAGCAGCCCAC	chr3:128204926-128205178(-)$1	252	208	233	19.5761
CAGGCGUCUUGCGGCCACACCCCUG	chr6:32939326-32939558(+)$1	232	88	113	22.5139
GCUUUUGAAAAAGAAAUAUGAAGGC	chr22:41833025-41833277(-)$1	252	29	54	23.6732
AGGUGAAGAAAAUGAAGGCCAUCUA	chr12:124221638-124221922(+)$1	284	43	68	22.8704
GACCGGCCCUCCCUCCUCCCCGGUU	chr1:1509773-1510058(-)$1	285	242	267	22.6580
GUGGAAAAAUAAAGACAUUACCAUG	chr4:15627326-15627576(-)$1	250	141	166	20.8040
ACUUGGACACUCAUUAUCACCCAGG	chr16:68156296-68156562(+)$1	266	179	204	22.7660
GCGUGGCCUCCCUUUCACUCACCUU	chr6:36936599-36936822(-)$1	223	28	53	22.6087
CUGGUCUCCUGCUCCUCUGGACUGU	chr2:220082879-220083134(-)$1	255	181	206	21.4814
CCGGCCUUUAUUCACUUUGGUGGGC	chr1:52498551-52498809(-)$1	258	53	78	22.6850
GCUAGGUCAAGCCCCUAUCCAGGCC	chr1:1684252-1684548(-)$1	296	201	226	23.7514
AAGGAGCAGUUUCACCAAUUCCUGG	chr19:5790126-5790383(-)$1	257	50	75	23.2106
GUUCUUCACGCGGCAUCAGAGGACU	chr8:144776438-144776699(+)$1	261	216	241	21.0557
UCUGACCACUUGAUAAUGUCAGGAC	chr6:27107021-27107272(+)$1	251	51	76	21.8054
GGCAGUACAGCAAAGGAAACAGUCA	chr15:51790881-51791249(-)$1	368	35	60	23.7514
CGCAGCCUCCAUCCUGCCAUGCUGC	chr1:47685359-47685641(-)$1	282	196	221	22.8587
UGAGGAAuccuccuccuccuccucc	chrX:119694090-119694406(-)$1	316	263	288	24.2727
CCCGGCCACCCAGCCCACCGCCGGA	chr12:122260447-122260722(+)$1	275	29	54	22.3679
UACCAUGGCAGAGACAAACAGCAUA	chr17:26919625-26919878(-)$1	253	66	91	21.9100
GUGGCCCAAUCCCCCUACGCUACAG	chr5:175933841-175934098(+)$1	257	28	53	23.4920
UCGUUCAGAGAGACAGAGUGGAUGA	chr22:20074083-20074330(+)$1	247	73	98	22.1172
GAUGCCACCACCUCCUUUGCAACAU	chr7:107398826-107399086(+)$1	260	37	62	22.9252
GGUGGUGAAUAAGAGCGUGCUCACC	chr1:67519365-67519664(-)$1	299	138	163	23.8336
CUCUUUUCGACCACCAUUUUGGGGG	chr6:30882527-30882768(+)$1	241	106	131	20.0883
CAGACAGUUCCAGACUUUGUGUUUG	chr22:45718974-45719226(+)$1	252	6	31	23.6732
ugcuucaaacauuuuucaggaccac	chr17:57776125-57776373(-)$1	248	91	116	23.8216
UCUGUGUCCUUGUCCCCAACCUAGC	chr1:44442740-44443030(+)$1	290	171	196	22.0401
GCCCAGAUCAAAUGCAACCUGGGCC	chr2:54197610-54197839(-)$1	229	74	99	23.4259
AGGCUUUUUUAUAACAGUGUCUUAU	chr3:14711340-14711613(+)$1	273	58	83	21.3639
AGCUGCUGACACGCUACGGGCAGAA	chr2:27607698-27607918(-)$1	220	17	42	22.4783
ACUCUCUAUAGUCAACCCAGAGUGG	chr12:123087517-123087793(+)$1	276	205	230	22.4848
CCACUGAACCCCAAAAGCAGUGCUC	chr4:113568307-113568609(+)$1	302	194	219	22.4631
GAGCCCUCAUGCGACCAAUCGGGCC	chr1:113460376-113460630(-)$1	254	177	202	21.5856
GCAGUGAUAACUAUGGCAGUCUGUC	chr11:57563924-57564234(+)$1	310	254	279	21.3186

#DB
(.((((.............)))).)	chr6:26156696-26156907(+)$1	1	136	161	23.4872
(.((((...........))))))).	chr7:148427054-148427357(+)$1	1	188	213	21.6678
(.((..............)).))))	chrX:153599155-153599420(-)$1	1	226	251	21.8444
((.((.............)).).))	chr19:13264176-13264423(+)$1	1	179	204	22.4732
((((((.............))))))	chr17:43012640-43012882(-)$1	1	141	166	21.5158
)((((((...........)))))))	chr2:152266795-152267044(+)$1	1	97	122	19.8616
((((..............))))...	chr5:40764959-40765183(-)$1	1	29	54	20.7993
.(((..............))).)))	chr17:7405158-7405453(+)$1	1	31	56	22.0877
((((.(............).)))))	chr4:6925729-6925980(+)$1	1	68	93	24.2358
((((((.............))))..	chr12:110765635-110765901(+)$1	1	148	173	23.4655
((((................)))..	chr3:37034397-37034618(-)$1	1	178	203	20.6661
((((((............))))(((	chr1:8418724-8418984(-)$1	1	130	155	21.9987
.(((((..............)))))	chr12:122958104-122958342(-)$1	1	186	211	22.8587
(((((((...........)))))))	chr19:42777986-42778235(+)$1	1	25	50	22.1172
((((.((...........)).))))	chr16:2285083-2285331(+)$1	1	200	225	21.8213
(((((((...........)))))))	chr4:1725365-1725592(+)$1	1	191	216	22.1172
((((((.............)))).)	chr19:54972477-54972694(+)$1	1	48	73	23.4499
(..(((..............)))..	chr9:131456197-131456422(+)$1	1	115	140	21.9241
.(((((.............))))).	chr1:204379487-204379702(-)$1	1	87	112	22.3679
..((((.............))))..	chr2:71653658-71653985(+)$1	1	225	250	21.9334
((((((.............)))...	chr3:33840100-33840333(+)$1	1	134	159	23.3676
((((.((...........)).))..	chr1:113460312-113460576(-)$1	1	98	123	21.0595
(.(((((...........))))).)	chr18:3457493-3457764(+)$1	1	33	58	22.2325
((((((.............))))))	chr11:62437342-62437604(-)$1	1	133	158	22.6580
((((.((...........)).))))	chr16:2052225-2052484(-)$1	1	219	244	21.8213
(..(((...........)))....)	chrX:30872180-30872483(-)$1	1	147	172	22.1365
.(((((...........))))).((	chr16:89661762-89661975(+)$1	1	8	33	20.2873
.(((((............)))))))	chr16:70286566-70286790(-)$1	1	145	170	22.9922
(((.((..............)))))	chr1:150483998-150484294(+)$1	1	142	167	21.0309
..((..............))...))	chr8:23423712-23423928(+)$1	1	113	138	21.3838
((................)).))))	chr3:128204926-128205178(-)$1	1	208	233	19.5761
((((.((...........)).))))	chr6:32939326-32939558(+)$1	1	88	113	22.5139
((((((.............))))))	chr22:41833025-41833277(-)$1	1	29	54	23.6732
(((((..............))))))	chr12:124221638-124221922(+)$1	1	43	68	22.8704
((((((.............))))))	chr1:1509773-1510058(-)$1	1	242	267	22.6580
((((................)))))	chr4:15627326-15627576(-)$1	1	141	166	20.8040
)(((((..............)))))	chr16:68156296-68156562(+)$1	1	179	204	22.7660
(.((((............)))))).	chr6:36936599-36936822(-)$1	1	28	53	22.6087
.((((((...........)))))).	chr2:220082879-220083134(-)$1	1	181	206	21.4814
((.(((............))).)))	chr1:52498551-52498809(-)$1	1	53	78	22.6850
(((.((............)).))))	chr1:1684252-1684548(-)$1	1	201	226	23.7514
(.((((............)))))))	chr19:5790126-5790383(-)$1	1	50	75	23.2106
((((((............)))))))	chr8:144776438-144776699(+)$1	1	216	241	21.0557
.(((((...........))))))).	chr6:27107021-27107272(+)$1	1	51	76	21.8054
(((.((............)).))))	chr15:51790881-51791249(-)$1	1	35	60	23.7514
.(((((..............)))))	chr1:47685359-47685641(-)$1	1	196	221	22.8587
.(((((.............))))).	chrX:119694090-119694406(-)$1	1	263	288	24.2727
.(((((.............))))).	chr12:122260447-122260722(+)$1	1	29	54	22.3679
((...((...........))...))	chr17:26919625-26919878(-)$1	1	66	91	21.9100
(((((.............)))))((	chr5:175933841-175934098(+)$1	1	28	53	23.4920
(((((((...........)))))))	chr22:20074083-20074330(+)$1	1	73	98	22.1172
(.(((.............))).)))	chr7:107398826-107399086(+)$1	1	37	62	22.9252
((((((............)).))))	chr1:67519365-67519664(-)$1	1	138	163	23.8336
((((................)))))	chr6:30882527-30882768(+)$1	1	106	131	20.0883
((((((.............))))))	chr22:45718974-45719226(+)$1	1	6	31	23.6732
((.(((............))).)))	chr17:57776125-57776373(-)$1	1	91	116	23.8216
(..((.............))..)).	chr1:44442740-44443030(+)$1	1	171	196	22.0401
((((((............)))))))	chr2:54197610-54197839(-)$1	1	74	99	23.4259
((((..............))))...	chr3:14711340-14711613(+)$1	1	58	83	21.3639
..(((((...........)))))..	chr2:27607698-27607918(-)$1	1	17	42	22.4783
(((((.............))))))(	chr12:123087517-123087793(+)$1	1	205	230	22.4848
.(((((...........))))))))	chr4:113568307-113568609(+)$1	1	194	219	22.4631
(.((((..............)))))	chr1:113460376-113460630(-)$1	1	177	202	21.5856
((((................)))))	chr11:57563924-57564234(+)$1	1	254	279	21.3186

#PSSM
e : 0.18	b : 0.12	c : 0.10	! : 0.10	g : 0.09	d : 0.07	f : 0.07	h : 0.04	: : 0.04	i : 0.03	[ : 0.03	F : 0.01	$ : 0.01	& : 0.01	= : 0.01	
e : 0.31	[ : 0.12	f : 0.09	g : 0.09	! : 0.07	d : 0.06	c : 0.06	h : 0.04	i : 0.03	b : 0.03	a : 0.01	F : 0.01	$ : 0.01	= : 0.01	
e : 0.29	d : 0.20	f : 0.09	g : 0.09	c : 0.06	b : 0.04	[ : 0.04	h : 0.04	! : 0.04	y : 0.01	= : 0.01	i : 0.01	" : 0.01	
e : 0.26	d : 0.20	c : 0.12	f : 0.09	g : 0.09	b : 0.07	[ : 0.04	h : 0.03	y : 0.01	= : 0.01	i : 0.01	" : 0.01	
e : 0.21	d : 0.14	b : 0.09	g : 0.09	c : 0.09	w : 0.07	f : 0.07	[ : 0.07	y : 0.07	h : 0.03	" : 0.01	
e : 0.18	d : 0.14	b : 0.14	w : 0.09	g : 0.09	v : 0.07	y : 0.07	c : 0.07	f : 0.06	h : 0.03	a : 0.01	
v : 0.28	w : 0.18	u : 0.18	t : 0.07	y : 0.07	b : 0.07	g : 0.04	f : 0.03	e : 0.03	
v : 0.28	t : 0.26	w : 0.18	u : 0.18	y : 0.07	
v : 0.28	t : 0.26	w : 0.18	u : 0.18	y : 0.07	
v : 0.28	t : 0.26	w : 0.18	u : 0.18	y : 0.07	
v : 0.28	t : 0.26	w : 0.18	u : 0.18	y : 0.07	
v : 0.28	t : 0.26	w : 0.18	u : 0.18	y : 0.07	
v : 0.28	t : 0.26	w : 0.18	u : 0.18	y : 0.07	
v : 0.28	t : 0.26	w : 0.18	u : 0.18	y : 0.07	
v : 0.28	t : 0.26	w : 0.18	u : 0.18	y : 0.07	
v : 0.28	t : 0.26	w : 0.18	u : 0.18	y : 0.07	
v : 0.28	t : 0.26	w : 0.18	u : 0.18	y : 0.07	
v : 0.28	w : 0.18	t : 0.18	u : 0.18	y : 0.07	e : 0.04	d : 0.01	c : 0.01	
v : 0.20	b : 0.20	w : 0.10	e : 0.10	d : 0.09	c : 0.07	y : 0.06	g : 0.06	f : 0.04	a : 0.01	h : 0.01	
b : 0.20	e : 0.17	d : 0.15	c : 0.09	w : 0.09	g : 0.09	f : 0.07	y : 0.06	h : 0.03	] : 0.01	
e : 0.25	d : 0.17	] : 0.15	c : 0.10	f : 0.09	g : 0.09	h : 0.03	3 : 0.03	4 : 0.01	b : 0.01	i : 0.01	2 : 0.01	
e : 0.32	d : 0.18	f : 0.09	g : 0.09	c : 0.06	] : 0.06	h : 0.03	b : 0.03	3 : 0.03	a : 0.01	4 : 0.01	= : 0.01	i : 0.01	2 : 0.01	
e : 0.32	d : 0.12	f : 0.09	g : 0.09	b : 0.09	c : 0.07	3 : 0.04	h : 0.03	4 : 0.03	] : 0.01	> : 0.01	: : 0.01	= : 0.01	i : 0.01	
e : 0.28	f : 0.10	d : 0.09	g : 0.09	c : 0.07	b : 0.07	] : 0.04	3 : 0.04	2 : 0.04	h : 0.03	4 : 0.03	> : 0.01	6 : 0.01	= : 0.01	i : 0.01	
e : 0.28	g : 0.10	c : 0.09	d : 0.07	2 : 0.06	f : 0.06	4 : 0.04	3 : 0.04	] : 0.04	h : 0.03	: : 0.03	b : 0.03	J : 0.01	> : 0.01	6 : 0.01	= : 0.01	i : 0.01	

#score	1425.3974909366689
#seq	64
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_transcript_m3_run1.txt

#BEAR
ccc[ccc[aqqqqqqqqaccc]c	chr5:10263170-10263426(+)$1	256	21	44	15.9424
iiiiiiiiiqqqqqqqqiiiiii	chr7:129746362-129746624(+)$1	262	126	149	16.1504
[ccceeeeeqqqqqqqqeeeee]	chr17:1561447-1561662(-)$1	215	152	175	14.5932
e[ccc[cccqqqqqqqqccc]cc	chr1:19512933-19513157(-)$1	224	112	135	16.4479
gg[ccc[bbqqqqqqqqbb]ccc	chrX:53222300-53222543(-)$1	243	13	36	15.8836
iiiiiiiiiqqqqqqqqiiiiii	chr1:220267453-220267716(+)$1	263	46	69	16.1504
c[ccc[cccqqqqqqqqcccccc	chr7:98606023-98606279(+)$1	256	151	174	16.3545
ffffffcccqqqqqqqqccc]ff	chr17:42931842-42932115(-)$1	273	241	264	15.2519
dddd!!cccqqqqqqqqccc22d	chr11:62289292-62289560(-)$1	268	169	192	15.6019
c[gggggggqqqqqqqqgggggg	chr1:19481424-19481664(-)$1	240	117	140	16.1045
d[ccc[cccqqqqqqqqccc]cc	chr3:184040097-184040337(+)$1	240	28	51	16.4171
bb[ffffffqqqqqqqqffffff	chr2:96958953-96959162(-)$1	209	48	71	14.0316
ggg[eeeeeqqqqqqqqeeeeeg	chr2:217005808-217006041(+)$1	233	29	52	14.8093
eeeeee[bbqqqqqqqqbb]eee	chr1:19441939-19442207(-)$1	268	179	202	14.8716
eeeeeddddqqqqqqqqdddd33	chr11:65347451-65347707(+)$1	256	74	97	14.4081
dddd"""bbqqqqqqqqbb333d	chr17:57754403-57754641(+)$1	238	33	56	15.4228
ccc"""cccqqqqqqqqccc333	chr3:184049030-184049251(+)$1	221	66	89	16.8411
dd[bbacccqqqqqqqqccc22a	chr19:15512073-15512365(-)$1	292	76	99	15.5007
fff"""cccqqqqqqqqccc333	chr1:226558034-226558256(-)$1	222	61	84	16.4513
g$$$$$cccqqqqqqqqcccggg	chr5:10256031-10256295(+)$1	264	139	162	15.4446
ccgggggggqqqqqqqqgggggg	chr2:96968876-96969118(-)$1	242	176	199	15.9513
ee!!eeeeeqqqqqqqqeeeeee	chrX:153587254-153587466(-)$1	212	83	106	14.5341
fff[bb[bbqqqqqqqqbb22bb	chr11:71729349-71729649(-)$1	300	127	150	14.3293
iiiiiiiiiqqqqqqqqiiiiii	chr8:48769698-48769948(-)$1	250	175	198	16.1504
iiiiiiiiaqqqqqqqqa]iiii	chr1:6662131-6662416(-)$1	285	223	246	16.0572
bb[bb!!bbqqqqqqqqbb22bb	chr15:25683635-25683885(-)$1	250	146	169	14.5714
=========qqqqqqqq======	chr6:53169064-53169324(-)$1	260	94	117	16.4712
hhhh[ddddqqqqqqqqddddhh	chr7:158449279-158449499(-)$1	220	99	122	13.9584
c[gggggggqqqqqqqqgggggg	chr1:19500808-19501040(-)$1	232	64	87	16.1045
d[a[ccc[aqqqqqqqqaccc]a	chr11:62297258-62297497(-)$1	239	100	123	15.9041
cc"""ddddqqqqqqqqdddd33	chr1:19488880-19489111(-)$1	231	162	185	15.2485
::gggggggqqqqqqqqgggggg	chr6:7246576-7246935(+)$1	359	316	339	14.0248
hhhhhhhbbqqqqqqqqbb]hhh	chrX:153583092-153583298(-)$1	206	90	113	14.3741
=========qqqqqqqq======	chrX:53577898-53578163(-)$1	265	163	186	16.4712
[ccc"""bbqqqqqqqqbb333c	chr2:96955598-96955834(-)$1	236	34	57	16.2724
ddd[bb[bbqqqqqqqqbb]bb]	chrX:53607812-53608057(-)$1	245	145	168	14.4158
a[gggggggqqqqqqqqgggggg	chr9:35720047-35720277(-)$1	230	169	192	16.0629
$bb!!ddddqqqqqqqqdddd22	chr1:19483161-19483414(-)$1	253	115	138	14.0617
####cccbbqqqqqqqqbb]ccc	chr3:184040778-184041002(+)$1	224	62	85	15.7305
d!!bb[cccqqqqqqqqccc]bb	chr2:198352978-198353223(-)$1	245	59	82	15.7073
ceeeee[bbqqqqqqqqbb22ee	chr6:119510776-119511083(-)$1	307	100	123	14.8271
ggggg!!bbqqqqqqqqbb]ggg	chr7:2400303-2400559(+)$1	256	28	51	16.2734
dd[bb[cccqqqqqqqqcccbbd	chr1:226573202-226573480(-)$1	278	74	97	15.0447
###ddddbbqqqqqqqqbb]ddd	chr3:196230137-196230392(-)$1	255	111	134	14.6169
ggggggg[aqqqqqqqqa]gggg	chr19:11120984-11121223(+)$1	239	14	37	15.8610
ffffff[bbqqqqqqqqbbffff	chrX:151138127-151138418(-)$1	291	191	214	14.5537
bb[bb[cccqqqqqqqqccc]bb	chr19:59055944-59056207(+)$1	263	86	109	15.2248
[a[acccbbqqqqqqqqbb]ccc	chr14:102498547-102498764(+)$1	217	155	178	15.8474
::gggggggqqqqqqqqgggggg	chr7:135300643-135300892(+)$1	249	2	25	14.0248
hhhhh[cccqqqqqqqqccc]hh	chr11:63967602-63967859(+)$1	257	208	231	15.4816
gg"""ddddqqqqqqqqdddd33	chr14:102506529-102506805(+)$1	276	113	136	15.2690
$$$ffffffqqqqqqqqffffff	chr1:226555125-226555410(-)$1	285	74	97	13.7605
::gggggggqqqqqqqqgggggg	chr13:46722417-46722673(-)$1	256	214	237	14.0248
e[ccc[cccqqqqqqqqccc333	chr5:31511070-31511359(-)$1	289	143	166	16.8090
e!!bb[cccqqqqqqqqcccbb2	chr12:6697408-6697662(-)$1	254	223	246	15.4425
a[dddd[bbqqqqqqqqbb]ddd	chr17:38145891-38146202(+)$1	311	248	271	14.7295
eeeee[cccqqqqqqqqccc22e	chr21:16436963-16437408(-)$1	445	413	436	15.6237
cc[ffffffqqqqqqqqffffff	chr1:19499323-19499543(-)$1	220	47	70	14.5134
[ccc"""bbqqqqqqqqbb22cc	chr19:11130166-11130431(+)$1	265	203	226	15.6921
""a[eeeeeqqqqqqqqeeeeea	chr7:2406073-2406301(+)$1	228	164	187	14.6340
ggggg[cccqqqqqqqqcccggg	chr2:96952396-96952619(-)$1	223	190	213	16.5815
cc!!eeeeeqqqqqqqqeeeee2	chr2:27456476-27456720(+)$1	244	120	143	14.7910
eegggggggqqqqqqqqgggggg	chr3:48646498-48646783(-)$1	285	27	50	15.7347
dddd!!cccqqqqqqqqccc22d	chrX:153236652-153236903(-)$1	251	21	44	15.6019
e"""eeeeeqqqqqqqqeeeee4	chrX:53423342-53423608(-)$1	266	8	31	14.6655
ggg!!ddddqqqqqqqqdddd22	chr22:21157436-21157709(-)$1	273	65	88	14.9476
fff!!ddddqqqqqqqqdddd22	chr17:7415039-7415267(+)$1	228	5	28	14.4722
hheeeee[aqqqqqqqqa]eeee	chr12:111157521-111157807(-)$1	286	138	161	14.2587
!ccc!!cccqqqqqqqqccc]cc	chr19:28985879-28986162(-)$1	283	83	106	16.5532

#otherMatches

#Seq PSSM
GCUGGGUUGUUUUGUUUCGCCAA	chr5:10263170-10263426(+)$1	256	21	44	15.9424
ugacauauaugcuuuucuguaug	chr7:129746362-129746624(+)$1	262	126	149	16.1504
UGUUGCCUCUUAUUCUUGGGGUG	chr17:1561447-1561662(-)$1	215	152	175	14.5932
ACAGCAGCCAAGGUAGAGGCCGC	chr1:19512933-19513157(-)$1	224	112	135	16.4479
CUGUCUGUAAUCACAGCUGGAGA	chrX:53222300-53222543(-)$1	243	13	36	15.8836
UCCUGCCCCUUCAAGCUGGGGCG	chr1:220267453-220267716(+)$1	263	46	69	16.1504
CAGCCACCAGGUAGCAGUGGGGC	chr7:98606023-98606279(+)$1	256	151	174	16.3545
GGAAGAAACUACAAAGUGUUCUU	chr17:42931842-42932115(-)$1	273	241	264	15.2519
GGGCCCCAAAGUGGACAUUGAUG	chr11:62289292-62289560(-)$1	268	169	192	15.6019
GCGGUGGUGUGUCCGUGUACUAC	chr1:19481424-19481664(-)$1	240	117	140	16.1045
uuuuauuuauuuauuuuuaauua	chr3:184040097-184040337(+)$1	240	28	51	16.4171
AAGAUGUAGCCACCUUUCUACGU	chr2:96958953-96959162(-)$1	209	48	71	14.0316
UACGUAGAAAGCAUUUGUUUUAG	chr2:217005808-217006041(+)$1	233	29	52	14.8093
GAGUUUGCAGACUUCUAUGAAAA	chr1:19441939-19442207(-)$1	268	179	202	14.8716
CUCCUGGUCUCUCCCCUGGCCCA	chr11:65347451-65347707(+)$1	256	74	97	14.4081
GUGAAAAUCCCUACUAUGACAGU	chr17:57754403-57754641(+)$1	238	33	56	15.4228
GCUGGAAGGAAUUUCUACCUGAA	chr3:184049030-184049251(+)$1	221	66	89	16.8411
CCUACCGCGACCAGUUCCGCAUG	chr19:15512073-15512365(-)$1	292	76	99	15.5007
GGGGAAGCUGAGCAAAAGGCAGA	chr1:226558034-226558256(-)$1	222	61	84	16.4513
GAACACCUGGACAAGAUCAGCGA	chr5:10256031-10256295(+)$1	264	139	162	15.4446
CUAUGAGGUGCUACUCAGCUUCA	chr2:96968876-96969118(-)$1	242	176	199	15.9513
CCCAUUGCAGGUCAAAGUGCAAG	chrX:153587254-153587466(-)$1	212	83	106	14.5341
CCUAGCCCUGCUGAAUGAGAAGC	chr11:71729349-71729649(-)$1	300	127	150	14.3293
AUGGUGGUUGAGAUAGUGGCCAC	chr8:48769698-48769948(-)$1	250	175	198	16.1504
GUGCGCCGCUUCUACCUGUUGGC	chr1:6662131-6662416(-)$1	285	223	246	16.0572
gcggcagcgaaagagaacgaggc	chr15:25683635-25683885(-)$1	250	146	169	14.5714
UGUGUGUGUUUGUGUGUGUACAU	chr6:53169064-53169324(-)$1	260	94	117	16.4712
CAGCUGUGGUGUGAUUUCCACGC	chr7:158449279-158449499(-)$1	220	99	122	13.9584
GUAAGGAAAUGACUCUCUUUCUU	chr1:19500808-19501040(-)$1	232	64	87	16.1045
GAUGUGGAGGUUCAUGGCCCAGA	chr11:62297258-62297497(-)$1	239	100	123	15.9041
GCGGUGGAAGAGGAAGAUUCCCA	chr1:19488880-19489111(-)$1	231	162	185	15.2485
GACGGCGCGGAAGAGGACGCGUC	chr6:7246576-7246935(+)$1	359	316	339	14.0248
CCCCUUCCAAGUGACGGUGAGGA	chrX:153583092-153583298(-)$1	206	90	113	14.3741
GCUGUGAUGCCACCUGACAUUGC	chrX:53577898-53578163(-)$1	265	163	186	16.4712
AUGGGAGCCUGUCAUUUGGACAU	chr2:96955598-96955834(-)$1	236	34	57	16.2724
GGAGAUCAACUACAUCCUUCGUG	chrX:53607812-53608057(-)$1	245	145	168	14.4158
GGUGGGCAGCAUGCCCCCUGCCC	chr9:35720047-35720277(-)$1	230	169	192	16.0629
CCCUGCAAGGAAGACUACUUGGC	chr1:19483161-19483414(-)$1	253	115	138	14.0617
UUCUGAGACCUUUUCCUGUCCUC	chr3:184040778-184041002(+)$1	224	62	85	15.7305
GAUGCCCUUAAUGCUACAAGAGC	chr2:198352978-198353223(-)$1	245	59	82	15.7073
GGGCCUCCUGGAGCACAAGAUGG	chr6:119510776-119511083(-)$1	307	100	123	14.8271
CUCUCUUGUUCAGAAUUACUGGG	chr7:2400303-2400559(+)$1	256	28	51	16.2734
UGACAUGUUUCUCCACUGGCUGC	chr1:226573202-226573480(-)$1	278	74	97	15.0447
ACGUUUGCCUUGAAAAUGGACAA	chr3:196230137-196230392(-)$1	255	111	134	14.6169
GCACAUUGUCACAGAUAGGAAUG	chr19:11120984-11121223(+)$1	239	14	37	15.8610
GCUUCUGCUUCCCUUAUAGAGAA	chrX:151138127-151138418(-)$1	291	191	214	14.5537
gcagcggcCCAGCAGUUGGCGGC	chr19:59055944-59056207(+)$1	263	86	109	15.2248
GCUGCUGGGGGAAAGCACCACAG	chr14:102498547-102498764(+)$1	217	155	178	15.8474
UACAUGUUUAAAUUCUAGAAUAU	chr7:135300643-135300892(+)$1	249	2	25	14.0248
AGGAGUGGGUUUUCUCUCUCUCU	chr11:63967602-63967859(+)$1	257	208	231	15.4816
ACCCCCAGGAUCCAGGGCCUGAC	chr14:102506529-102506805(+)$1	276	113	136	15.2690
GUCGGGGGCUUUCUUUUGCUCCU	chr1:226555125-226555410(-)$1	285	74	97	13.7605
AGAAUAUGAUGCUAUUUUCAUGU	chr13:46722417-46722673(-)$1	256	214	237	14.0248
GGAGCAGGCAAGAAAAGGCCAAA	chr5:31511070-31511359(-)$1	289	143	166	16.8090
UAAUAAGUAACAUGUUAUGCUAG	chr12:6697408-6697662(-)$1	254	223	246	15.4425
CAGGCCAACAACAAUGAGUGGGC	chr17:38145891-38146202(+)$1	311	248	271	14.7295
CGGCCCGCGUCGGCUCUCGCUUG	chr21:16436963-16437408(-)$1	445	413	436	15.6237
UCUCAAAGGUCCAGGUCUCUUUG	chr1:19499323-19499543(-)$1	220	47	70	14.5134
UCGCCAAGGUAACGUGUCCCUGU	chr19:11130166-11130431(+)$1	265	203	226	15.6921
CAGUGAUGGCAAACGCCCCGUCC	chr7:2406073-2406301(+)$1	228	164	187	14.6340
CUCUGUGAGUGUCUCCUCUCCAG	chr2:96952396-96952619(-)$1	223	190	213	16.5815
UGGAGCGCUUCCUGAGCAGCGCA	chr2:27456476-27456720(+)$1	244	120	143	14.7910
CGCGGCUGUUCCCUUCCACAGCC	chr3:48646498-48646783(-)$1	285	27	50	15.7347
GUCGAGGCUGUUUCGGGAGCGGC	chrX:153236652-153236903(-)$1	251	21	44	15.6019
AAUAUCCCAGGGUAAGAUGGGGA	chrX:53423342-53423608(-)$1	266	8	31	14.6655
CCACAGGCCAUGUGACAGGUUGA	chr22:21157436-21157709(-)$1	273	65	88	14.9476
CUGGAUCUGGGUGGCGACAGAAG	chr17:7415039-7415267(+)$1	228	5	28	14.4722
AACUGUUGAUGGCAUAUUGAAUA	chr12:111157521-111157807(-)$1	286	138	161	14.2587
AUGUCUUGGAAUUCCUACCACAC	chr19:28985879-28986162(-)$1	283	83	106	16.5532

#DB
(((.(((.(........)))).)	chr5:10263170-10263426(+)$1	1	21	44	15.9424
(((((((((........))))))	chr7:129746362-129746624(+)$1	1	126	149	16.1504
.((((((((........))))).	chr17:1561447-1561662(-)$1	1	152	175	14.5932
(.(((.(((........))).))	chr1:19512933-19513157(-)$1	1	112	135	16.4479
((.(((.((........)).)))	chrX:53222300-53222543(-)$1	1	13	36	15.8836
(((((((((........))))))	chr1:220267453-220267716(+)$1	1	46	69	16.1504
(.(((.(((........))))))	chr7:98606023-98606279(+)$1	1	151	174	16.3545
(((((((((........))).))	chr17:42931842-42932115(-)$1	1	241	264	15.2519
((((..(((........)))..)	chr11:62289292-62289560(-)$1	1	169	192	15.6019
(.(((((((........))))))	chr1:19481424-19481664(-)$1	1	117	140	16.1045
(.(((.(((........))).))	chr3:184040097-184040337(+)$1	1	28	51	16.4171
((.((((((........))))))	chr2:96958953-96959162(-)$1	1	48	71	14.0316
(((.(((((........))))))	chr2:217005808-217006041(+)$1	1	29	52	14.8093
)(((((.((........)).)))	chr1:19441939-19442207(-)$1	1	179	202	14.8716
(((((((((........))))..	chr11:65347451-65347707(+)$1	1	74	97	14.4081
((((...((........))...)	chr17:57754403-57754641(+)$1	1	33	56	15.4228
(((...(((........)))...	chr3:184049030-184049251(+)$1	1	66	89	16.8411
((.((((((........)))..)	chr19:15512073-15512365(-)$1	1	76	99	15.5007
(((...(((........)))...	chr1:226558034-226558256(-)$1	1	61	84	16.4513
(.....(((........))))))	chr5:10256031-10256295(+)$1	1	139	162	15.4446
(((((((((........))))))	chr2:96968876-96969118(-)$1	1	176	199	15.9513
((..(((((........))))))	chrX:153587254-153587466(-)$1	1	83	106	14.5341
(((.((.((........))..))	chr11:71729349-71729649(-)$1	1	127	150	14.3293
(((((((((........))))))	chr8:48769698-48769948(-)$1	1	175	198	16.1504
(((((((((........).))))	chr1:6662131-6662416(-)$1	1	223	246	16.0572
((.((..((........))..))	chr15:25683635-25683885(-)$1	1	146	169	14.5714
(((((((((........))))))	chr6:53169064-53169324(-)$1	1	94	117	16.4712
((((.((((........))))))	chr7:158449279-158449499(-)$1	1	99	122	13.9584
(.(((((((........))))))	chr1:19500808-19501040(-)$1	1	64	87	16.1045
(.(.(((.(........)))).)	chr11:62297258-62297497(-)$1	1	100	123	15.9041
((...((((........))))..	chr1:19488880-19489111(-)$1	1	162	185	15.2485
..(((((((........))))))	chr6:7246576-7246935(+)$1	1	316	339	14.0248
(((((((((........)).)))	chrX:153583092-153583298(-)$1	1	90	113	14.3741
(((((((((........))))))	chrX:53577898-53578163(-)$1	1	163	186	16.4712
.(((...((........))...)	chr2:96955598-96955834(-)$1	1	34	57	16.2724
(((.((.((........)).)).	chrX:53607812-53608057(-)$1	1	145	168	14.4158
(.(((((((........))))))	chr9:35720047-35720277(-)$1	1	169	192	16.0629
.((..((((........))))..	chr1:19483161-19483414(-)$1	1	115	138	14.0617
....(((((........)).)))	chr3:184040778-184041002(+)$1	1	62	85	15.7305
(..((.(((........))).))	chr2:198352978-198353223(-)$1	1	59	82	15.7073
((((((.((........))..))	chr6:119510776-119511083(-)$1	1	100	123	14.8271
(((((..((........)).)))	chr7:2400303-2400559(+)$1	1	28	51	16.2734
((.((.(((........))))))	chr1:226573202-226573480(-)$1	1	74	97	15.0447
...((((((........)).)))	chr3:196230137-196230392(-)$1	1	111	134	14.6169
(((((((.(........).))))	chr19:11120984-11121223(+)$1	1	14	37	15.8610
((((((.((........))))))	chrX:151138127-151138418(-)$1	1	191	214	14.5537
((.((.(((........))).))	chr19:59055944-59056207(+)$1	1	86	109	15.2248
.(.((((((........)).)))	chr14:102498547-102498764(+)$1	1	155	178	15.8474
..(((((((........))))))	chr7:135300643-135300892(+)$1	1	2	25	14.0248
(((((.(((........))).))	chr11:63967602-63967859(+)$1	1	208	231	15.4816
((...((((........))))..	chr14:102506529-102506805(+)$1	1	113	136	15.2690
...((((((........))))))	chr1:226555125-226555410(-)$1	1	74	97	13.7605
..(((((((........))))))	chr13:46722417-46722673(-)$1	1	214	237	14.0248
(.(((.(((........)))...	chr5:31511070-31511359(-)$1	1	143	166	16.8090
(..((.(((........))))).	chr12:6697408-6697662(-)$1	1	223	246	15.4425
(.((((.((........)).)))	chr17:38145891-38146202(+)$1	1	248	271	14.7295
(((((.(((........)))..)	chr21:16436963-16437408(-)$1	1	413	436	15.6237
((.((((((........))))))	chr1:19499323-19499543(-)$1	1	47	70	14.5134
.(((...((........))..))	chr19:11130166-11130431(+)$1	1	203	226	15.6921
..(.(((((........))))))	chr7:2406073-2406301(+)$1	1	164	187	14.6340
(((((.(((........))))))	chr2:96952396-96952619(-)$1	1	190	213	16.5815
((..(((((........))))).	chr2:27456476-27456720(+)$1	1	120	143	14.7910
))(((((((........))))))	chr3:48646498-48646783(-)$1	1	27	50	15.7347
((((..(((........)))..)	chrX:153236652-153236903(-)$1	1	21	44	15.6019
(...(((((........))))).	chrX:53423342-53423608(-)$1	1	8	31	14.6655
(((..((((........))))..	chr22:21157436-21157709(-)$1	1	65	88	14.9476
(((..((((........))))..	chr17:7415039-7415267(+)$1	1	5	28	14.4722
(((((((.(........).))))	chr12:111157521-111157807(-)$1	1	138	161	14.2587
.(((..(((........))).))	chr19:28985879-28986162(-)$1	1	83	106	16.5532

#PSSM
c : 0.14	e : 0.13	d : 0.13	g : 0.11	f : 0.07	i : 0.05	[ : 0.05	h : 0.05	b : 0.04	: : 0.04	= : 0.02	a : 0.02	$ : 0.02	# : 0.02	" : 0.01	! : 0.01	
c : 0.14	[ : 0.13	g : 0.10	d : 0.08	e : 0.08	f : 0.07	i : 0.05	b : 0.05	h : 0.05	: : 0.04	$ : 0.02	= : 0.02	# : 0.02	! : 0.02	" : 0.02	a : 0.01	
g : 0.18	c : 0.14	[ : 0.11	f : 0.07	d : 0.07	e : 0.07	i : 0.05	! : 0.05	h : 0.04	" : 0.04	$ : 0.02	= : 0.02	a : 0.02	# : 0.02	b : 0.01	
g : 0.15	c : 0.13	[ : 0.08	b : 0.08	f : 0.07	d : 0.07	e : 0.07	" : 0.07	! : 0.07	i : 0.05	h : 0.04	= : 0.02	$ : 0.01	# : 0.01	a : 0.01	
e : 0.15	g : 0.15	c : 0.13	b : 0.11	" : 0.10	! : 0.08	f : 0.07	i : 0.05	= : 0.02	h : 0.02	d : 0.02	$ : 0.01	[ : 0.01	
[ : 0.15	e : 0.13	g : 0.13	d : 0.13	c : 0.07	f : 0.07	! : 0.07	" : 0.07	i : 0.05	b : 0.02	= : 0.02	a : 0.01	$ : 0.01	h : 0.01	
c : 0.33	g : 0.13	d : 0.11	e : 0.10	[ : 0.10	i : 0.05	f : 0.04	" : 0.04	! : 0.02	= : 0.02	h : 0.01	
c : 0.27	b : 0.23	g : 0.11	d : 0.10	e : 0.08	[ : 0.05	i : 0.05	f : 0.04	= : 0.02	
c : 0.27	b : 0.23	g : 0.11	d : 0.10	e : 0.08	a : 0.07	i : 0.04	f : 0.04	= : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.27	b : 0.23	g : 0.11	d : 0.10	e : 0.08	a : 0.07	i : 0.04	f : 0.04	= : 0.02	
c : 0.30	b : 0.23	g : 0.11	d : 0.10	e : 0.08	i : 0.04	f : 0.04	] : 0.04	= : 0.02	
c : 0.30	] : 0.13	g : 0.13	e : 0.10	d : 0.10	i : 0.05	f : 0.05	2 : 0.05	3 : 0.02	= : 0.02	
g : 0.17	d : 0.13	e : 0.11	2 : 0.11	] : 0.10	c : 0.08	3 : 0.07	i : 0.05	f : 0.05	b : 0.04	= : 0.02	h : 0.01	
g : 0.17	e : 0.13	c : 0.11	3 : 0.11	2 : 0.10	b : 0.10	f : 0.07	i : 0.05	h : 0.04	] : 0.02	= : 0.02	d : 0.02	
g : 0.18	c : 0.14	d : 0.08	3 : 0.08	f : 0.07	e : 0.07	2 : 0.07	i : 0.05	b : 0.05	a : 0.04	h : 0.04	] : 0.02	= : 0.02	4 : 0.01	

#score	1058.9439545304583
#seq	69
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456SOS_UTP18_UTR_m3_run2.txt

#BEAR
gggga^^^^^^^^^^^^^^^^^^^^^a]ggg	chr12:104341341-104341592(+)$1	251	192	223	15.4562
eeeehhhhhhhhvvvvvvvvvvvvvhhhhhh	chr9:100777604-100777861(+)$1	257	168	199	20.3994
ggggggg!!ddddrrrrrrrrrddddggggg	chr11:122929515-122929721(-)$1	206	20	51	15.0119
hhhhhhhh"""bbrrrrrrrrrbb333hhhh	chr4:174253033-174253339(-)$1	306	87	118	14.5192
eeeeeee!!ddddtttttttttttddddeee	chr11:5275486-5275725(-)$1	239	66	97	20.0296
eeeeeccceeeee[assssssssssaeeeee	chr17:27047468-27047719(+)$1	251	171	202	17.0426
eeeeeccceeeee[assssssssssaeeeee	chr17:27047519-27047735(+)$1	216	120	151	17.0426
[iiiiiiiiivvvvvvvvvvvvviiiiiiii	chr2:159313512-159313832(+)$1	320	118	149	19.7001

#otherMatches

#Seq PSSM
UCCCCUUCUCCCCUGCACUGUAAAAUGUGGG	chr12:104341341-104341592(+)$1	251	192	223	15.4562
UUGUAGCUGUUUAAAAAAAAAAAAAAGGUAG	chr9:100777604-100777861(+)$1	257	168	199	20.3994
gcuaugaugauggauuccaaaaccauucgua	chr11:122929515-122929721(-)$1	206	20	51	15.0119
agaggaugaagaugaagaaUAAAUGGCUAUC	chr4:174253033-174253339(-)$1	306	87	118	14.5192
AAAGUCAAGGCACAUGGCAAGAAGGUGCUGA	chr11:5275486-5275725(-)$1	239	66	97	20.0296
GCCAGGGUGGCCCACUGCAGUUCUUGGGGCC	chr17:27047468-27047719(+)$1	251	171	202	17.0426
GCCAGGGUGGCCCACUGCAGUUCUUGGGGCC	chr17:27047519-27047735(+)$1	216	120	151	17.0426
cgcggcACUUUUUUAAUUUUUUCGGGUGCCG	chr2:159313512-159313832(+)$1	320	118	149	19.7001

#DB
(((((.....................).)))	chr12:104341341-104341592(+)$1	1	192	223	15.4562
((((((((((((.............))))))	chr9:100777604-100777861(+)$1	1	168	199	20.3994
(((((((..((((.........)))))))))	chr11:122929515-122929721(-)$1	1	20	51	15.0119
((((((((...((.........))...))))	chr4:174253033-174253339(-)$1	1	87	118	14.5192
(((((((..((((...........)))))))	chr11:5275486-5275725(-)$1	1	66	97	20.0296
))))))))(((((.(..........))))))	chr17:27047468-27047719(+)$1	1	171	202	17.0426
))))))))(((((.(..........))))))	chr17:27047519-27047735(+)$1	1	120	151	17.0426
.(((((((((.............))))))))	chr2:159313512-159313832(+)$1	1	118	149	19.7001

#PSSM
e : 0.50	g : 0.25	h : 0.12	[ : 0.12	
e : 0.50	g : 0.25	h : 0.12	i : 0.12	
e : 0.50	g : 0.25	h : 0.12	i : 0.12	
e : 0.50	g : 0.25	h : 0.12	i : 0.12	
e : 0.37	h : 0.25	a : 0.12	g : 0.12	i : 0.12	
h : 0.25	c : 0.25	^ : 0.12	g : 0.12	e : 0.12	i : 0.12	
h : 0.25	c : 0.25	^ : 0.12	g : 0.12	e : 0.12	i : 0.12	
h : 0.25	! : 0.25	c : 0.25	^ : 0.12	i : 0.12	
! : 0.25	e : 0.25	^ : 0.12	h : 0.12	" : 0.12	i : 0.12	
d : 0.25	e : 0.25	^ : 0.12	h : 0.12	" : 0.12	i : 0.12	
d : 0.25	e : 0.25	^ : 0.12	h : 0.12	" : 0.12	v : 0.12	
d : 0.25	e : 0.25	^ : 0.12	h : 0.12	b : 0.12	v : 0.12	
v : 0.25	d : 0.25	e : 0.25	^ : 0.12	b : 0.12	
v : 0.25	r : 0.25	[ : 0.25	^ : 0.12	t : 0.12	
v : 0.25	r : 0.25	a : 0.25	^ : 0.12	t : 0.12	
v : 0.25	r : 0.25	s : 0.25	^ : 0.12	t : 0.12	
v : 0.25	r : 0.25	s : 0.25	^ : 0.12	t : 0.12	
v : 0.25	r : 0.25	s : 0.25	^ : 0.12	t : 0.12	
v : 0.25	r : 0.25	s : 0.25	^ : 0.12	t : 0.12	
v : 0.25	r : 0.25	s : 0.25	^ : 0.12	t : 0.12	
v : 0.25	r : 0.25	s : 0.25	^ : 0.12	t : 0.12	
v : 0.25	r : 0.25	s : 0.25	^ : 0.12	t : 0.12	
v : 0.25	s : 0.25	^ : 0.12	d : 0.12	b : 0.12	t : 0.12	
s : 0.25	^ : 0.12	v : 0.12	d : 0.12	b : 0.12	t : 0.12	i : 0.12	
d : 0.25	s : 0.25	^ : 0.12	v : 0.12	3 : 0.12	i : 0.12	
d : 0.25	a : 0.25	^ : 0.12	h : 0.12	3 : 0.12	i : 0.12	
e : 0.25	a : 0.12	h : 0.12	g : 0.12	3 : 0.12	d : 0.12	i : 0.12	
h : 0.25	e : 0.25	] : 0.12	g : 0.12	d : 0.12	i : 0.12	
e : 0.37	g : 0.25	h : 0.25	i : 0.12	
e : 0.37	g : 0.25	h : 0.25	i : 0.12	
e : 0.37	g : 0.25	h : 0.25	i : 0.12	

#score	139.2019638293624
#seq	8
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_CDS_m2_run2.txt

#BEAR
####bb####bb[cccnnnnnccc]bbbb22ggggggg	chr9:100773513-100773753(+)$1	240	138	176	15.9985
####bb####bb[cccnnnnnccc]bbbb22ggggggg	chr9:100773553-100773771(+)$1	218	98	136	15.9985
!!ffffff####ddddnnnnndddd333ffffffffff	chr2:230656763-230657045(-)$1	282	220	258	14.5960
[eeeee[a"""a[cccnnnnnccc]a333a]eeeee]b	chr1:52305957-52306232(-)$1	275	227	265	17.0340
eee"""ggggggg[bbnnnnnbbggggggg4444eeee	chr11:47493615-47493929(-)$1	314	159	197	14.1985
[a"""a"""ccc!!a[ammmma]a22ccc333a22a]d	chr10:103577576-103577934(-)$1	358	145	183	14.5843
!ffffff[ccc!!bboooooobbcccffffff22cccc	chr15:69072648-69072912(-)$1	264	148	186	11.8456
=========[eeeeeooooooeeeee]===========	chr14:102449685-102449999(+)$1	314	53	91	13.9392
cc!!bb!!ccc!!cccnnnnnccc22ccc333bb22cc	chr13:98667879-98668137(+)$1	258	206	244	16.9815
ee[ddddccc####bbnnnnnbb22ccc333dddd]ee	chr1:200587354-200587684(-)$1	330	214	252	13.8847
ccc"""a[ccc[ddddnnnnndddd]ccc]a333ccc2	chr1:154155362-154155566(-)$1	204	52	90	15.4266
[a[ccc[bb[bb[cccnnnnnccc]bb]bbccc]a]a:	chr19:54705253-54705497(+)$1	244	44	82	13.4790
ggggggg[ccc[a[a[ammmma]a]a]cccgggggggd	chr19:5623271-5623508(+)$1	237	143	181	12.1080
ddiiiiiiiii!!cccnnnnnccc333iiiiiiiii]d	chr5:145850104-145850411(+)$1	307	78	116	17.7720
""ffffff$$$$$cccnnnnnccc22ffffffeeeee:	chr2:85768864-85769115(+)$1	251	171	209	13.9737
[============[ccclllccc]============]c	chr4:142154863-142155163(+)$1	300	67	105	14.9986
g==========eeeeennnnneeeee4444========	chr20:34302044-34302307(-)$1	263	180	218	15.4684
""dddddddd!!cccooooooccc333dddd4444ddd	chr6:31729492-31729774(+)$1	282	16	54	13.9897
eeeee!!ccc[a[cccoooooocccaccc22eeeee]a	chr11:129991472-129991771(+)$1	299	85	123	13.7019
eeeee!!a[ccc[cccooooooccc]ccc]a22eeeee	chr17:34171852-34172137(+)$1	285	111	149	13.6943
ddddbb!!bb[ccc[annnnna]ccc]bb]bb]ddddd	chr17:76219443-76219762(+)$1	319	133	171	12.5162
bb[eeeee$$$$$cccnnnnnccc22eeeee]bb::ee	chr2:232325323-232325598(-)$1	275	55	93	12.7249
c####dddd!!eeeeennnnneeeee]dddd4444ccc	chr3:170584050-170584361(-)$1	311	76	114	13.6227
###eeeee$$$$$cccnnnnnccc4444eeeee333ee	chr10:43297484-43297772(+)$1	288	172	210	16.5392
ddd####bb!!ddddoooooodddd22bb]dddd]ddd	chr2:27606297-27606568(-)$1	271	124	162	12.0431
ffffffiiiiiiiiiooooooiiiiiiiii333fffff	chr9:100777545-100777748(+)$1	203	18	56	12.9144
fff$$$$$eeeeecccnnnnnccc22eeeeeffffff=	chr19:8530106-8530369(+)$1	263	95	133	13.4599
gggggg"""a"""cccmmmmccc22a333ggggggg]f	chr12:132198558-132198893(+)$1	335	188	226	14.0704
ggg[a===========oooooo===========4444a	chr1:150198838-150199203(-)$1	365	47	85	15.3153
!!ccc####bb!!cccooooooccc22bb22ccc]eee	chr8:30945292-30945537(+)$1	245	147	185	14.9845
$$$cccbb"""eeeeennnnneeeeebb]ccc333ddd	chr14:39649884-39650194(+)$1	310	264	302	13.2063
="""bb[eeeee!!bbnnnnnbb333eeeee]bb]===	chr16:2808893-2809149(+)$1	256	173	211	14.5535
!!bb!!eeeee"""bbnnnnnbb333eeeee22bbccc	chr15:66791638-66791889(-)$1	251	150	188	14.0873
[a"""dddd####cccnnnnnccc333dddd>>>>>>>	chr10:120809213-120809515(-)$1	302	125	163	16.0702
iiii!!a[==========lll==========a]iiiii	chr8:117861117-117861339(-)$1	222	50	88	14.4388
###iiiiiiiii[bboooooobb]iiiiiiiii=====	chr17:48820972-48821274(+)$1	302	39	77	14.2619
eeeee[a[gggggggooooooggggggg333a]eeeee	chr8:124382090-124382367(-)$1	277	32	70	12.7971
:iiiiiiiii####cccmmmmccc22iiiiiiiii:bb	chr3:9512207-9512506(+)$1	299	64	102	11.7791
ccc!!eeeee"""bboooooobb4444eeeee22cccc	chr7:142651446-142651714(-)$1	268	115	153	13.4003
dd[bbcccbb####cccmmmmccc333bb]ccc]bb]d	chr14:102550990-102551265(-)$1	275	163	201	12.5633
+===========!!bboooooobb]===========55	chr1:165728659-165728921(-)$1	262	70	108	13.1661
dd[bbcccbb####cccmmmmccc333bb]ccc]bb]d	chr14:102550922-102551190(-)$1	268	88	126	12.5633
c!!eeeee####ddddnnnnndddd]eeeee>>>>>>>	chr5:145882920-145883202(+)$1	282	46	84	13.7188
ccc"""eeeee[ddddnnnnndddd22eeeee]ccc]=	chr2:29169374-29169690(+)$1	316	75	113	14.1145
ggggggg"""ffffffnnnnnffffff4444ggggggg	chr15:44843531-44843821(+)$1	290	226	264	13.9037
ggg[dddd$$$$$cccnnnnnccc4444ddddgggggg	chr11:32610039-32610323(+)$1	284	231	269	15.5891
$ccc!!cccgggggggnnnnnggggggg]ccc333ccc	chr2:232576551-232576778(+)$1	227	23	61	14.6131
ccdddd!!ccc!!ddddllldddd22ccc]dddd]ccc	chr19:19105888-19106180(-)$1	292	23	61	11.8303
[eeeee[a"""a[cccnnnnnccc]a333a]eeeee]b	chr1:52305891-52306157(-)$1	266	152	190	17.0340
:dddd"""eeeeecccnnnnnccc]eeeee4444dddd	chr2:170668076-170668357(+)$1	281	28	66	13.4826
ffffff[==========lll==========ffffff]b	chr20:42086915-42087255(+)$1	340	252	290	12.3083
cc"""ccc[ccc!!cccmmmmccc]ccccccccc333c	chr7:148514851-148515175(-)$1	324	89	127	12.9772
ii####bb####ddddnnnnndddd333bb]iiiiiii	chr3:156870712-156871053(-)$1	341	184	222	16.2285
=!!bb$$$$$ddddoooooodddd333bb22=======	chr13:31035369-31035667(-)$1	298	158	196	13.0136
!!eeeee$$$$$ddddnnnnndddd22eeeee22a:cc	chr17:4575288-4575634(-)$1	346	212	250	13.4813
========"""bbrrrrrrrrrbb4444==========	chrX:64956557-64956865(+)$1	308	235	273	12.8752
gggggg"""eeeee[annnnna]eeeee4444gggggg	chr15:25615919-25616291(-)$1	372	306	344	14.5165
:dddd!!ccc!!ddddnnnnndddd]ccc4444dddd:	chr12:104340493-104340728(+)$1	235	128	166	12.7022
c!!ffffffbb!!cccnnnnnccc22bb4444ffffff	chr3:99536635-99536995(+)$1	360	158	196	15.2329
c####bb!!gggggggooooooggggggg22bb333cc	chr9:100777576-100777798(+)$1	222	43	81	13.3271

#otherMatches

#Seq PSSM
acgaugaagUCAGUGAGGAGGUCAGUGCAGCUGUUUUC	chr9:100773513-100773753(+)$1	240	138	176	15.9985
acgaugaagUCAGUGAGGAGGUCAGUGCAGCUGUUUUC	chr9:100773553-100773771(+)$1	218	98	136	15.9985
UUCAGGGCCUUUGGCUUAAAUGGCUUUUGCUUUGCUUU	chr2:230656763-230657045(-)$1	282	220	258	14.5960
gaagaugaguuugaugaugaacaugaugaugaucuuga	chr1:52305957-52306232(-)$1	275	227	265	17.0340
UCUGAGACUGGAGUGAGAGGGUCUUCUGGUAAGUGGGG	chr11:47493615-47493929(-)$1	314	159	197	14.1985
GGGCAGGAGGAUGGUGCAGAAGGAGAGUCAAGCGACGU	chr10:103577576-103577934(-)$1	358	145	183	14.5843
GAAGAAGAGCUUGGUGGUAUGGCAGCCUUUUUACUCUC	chr15:69072648-69072912(-)$1	264	148	186	11.8456
AGUUUUUCAGACUUGGGAUGAUGAGUAUGAGAAACUUC	chr14:102449685-102449999(+)$1	314	53	91	13.9392
ACUUGUAAAUGCCUCAAUUUCUGAUUUAUGUGACUUGU	chr13:98667879-98668137(+)$1	258	206	244	16.9815
GAUUCUGCAGAAAAGUGGAAAACAGCUGAAAUAGAUUC	chr1:200587354-200587684(-)$1	330	214	252	13.8847
GCUGAGCGCCUCCAGCGAGAAGUUGAGGGAGAAAGGCG	chr1:154155362-154155566(-)$1	204	52	90	15.4266
UCUAGUUGUUGUGCCAGUACGUGGGACUACACUUGUCC	chr19:54705253-54705497(+)$1	244	44	82	13.4790
GGGCCCCGAGGGCGGGCACAGGGUGGGUCUGGGGUCCU	chr19:5623271-5623508(+)$1	237	143	181	12.1080
UUAAUUUUUUUCAUAGAAAAGUUAGAAGAGAAGAUUAA	chr5:145850104-145850411(+)$1	307	78	116	17.7720
CUGGCAGAACUACGCCGUAAUGGCACUUUGCCUUGGUU	chr2:85768864-85769115(+)$1	251	171	209	13.9737
GAUGCUUAUUGGAAGAACCUUUCAUCUGAUAAGUAUGG	chr4:142154863-142155163(+)$1	300	67	105	14.9986
UAAUGGCAAGACUUGCAGAGGGUAAGUGUUUCUUGCUA	chr20:34302044-34302307(-)$1	263	180	218	15.4684
UUUUCUCCCUCCCCACAGGAUUGGCCAAGGGUUUCAGG	chr6:31729492-31729774(+)$1	282	16	54	13.9897
CAUGUGGGGUAGACCAGUUCCAUGGCACUGAAUAUGUG	chr11:129991472-129991771(+)$1	299	85	123	13.7019
GUGGUGGCGGCUAUGGAGGAGACCGAGGUGGGGGCUAC	chr17:34171852-34172137(+)$1	285	111	149	13.6943
UUGAGGAAACUGCGGAGAAAGUGCGCCGUGCCAUCGAG	chr17:76219443-76219762(+)$1	319	133	171	12.5162
CAAAGGAAAGAAAGCUGCAAAAGUUGUUCCUGUGAAAG	chr2:232325323-232325598(-)$1	275	55	93	12.7249
CUUAAGAAGAACAAUCUUCGUGAUUGGCUUCGAGUGGU	chr3:170584050-170584361(-)$1	311	76	114	13.6227
GCAGAAGAUGGUAAGUAAAGAGCUGGGUUCUUCAGGAA	chr10:43297484-43297772(+)$1	288	172	210	16.5392
AGCGGUGGUGGCCCUGAUACGAGGGAAGCAGUUGAUUG	chr2:27606297-27606568(-)$1	271	124	162	12.0431
UUUGUUGUUGUUGCCUCCAUUGGCAAUAAUCUAAGCAA	chr9:100777545-100777748(+)$1	203	18	56	12.9144
UUUUAGGAUCCUGAUGGUGAACAUGCCAGGAGAGCAAU	chr19:8530106-8530369(+)$1	263	95	133	13.4599
CCUUGCAUACGGACUUGCUUGAGGAGGAGGCAAGGCAA	chr12:132198558-132198893(+)$1	335	188	226	14.0704
UUUACUCAUCUUUAAAUGAUUUUUUAAAGAUGGCGAUG	chr1:150198838-150199203(-)$1	365	47	85	15.3153
AGCACUGAAGUAUGUUUGAAAUGACUCACCUGUGAUAC	chr8:30945292-30945537(+)$1	245	147	185	14.9845
AAGUGUAGAACCUUCAGAAAAUGAAGCUAGCAAAGAAU	chr14:39649884-39650194(+)$1	310	264	302	13.2063
UGAAUGACUGGAGAAGGUUUGCUGAAUUCAGGCAGAGG	chr16:2808893-2809149(+)$1	256	173	211	14.5535
UAAAUUUGAUUAUUCCAUAAAGGUCAAAUCAUUUUGGA	chr15:66791638-66791889(-)$1	251	150	188	14.0873
AGGGAGUUGGAAAUUGAAGAACGAGAACGGCGUAGAGA	chr10:120809213-120809515(-)$1	302	125	163	16.0702
UUGGGGGUCAUUUUUAUUCAGGAUGAAGAUGCAUCAGG	chr8:117861117-117861339(-)$1	222	50	88	14.4388
ACAAUAGUUGGGUUUGAAAGAAAUCUUAACUGUUUUUU	chr17:48820972-48821274(+)$1	302	39	77	14.2619
ACUCACCUAUGUUAAAAAUUGUUAACAUUUUGCUGAGU	chr8:124382090-124382367(-)$1	277	32	70	12.7971
CCCACUUCUGAGACUGGUUUCCCAAGCAGAAGUGGAGA	chr3:9512207-9512506(+)$1	299	64	102	11.7791
UUUGAUGUUCCCCUCAAGCAAGAUCAAGAACAGAAGAU	chr7:142651446-142651714(-)$1	268	115	153	13.4003
AAAUCCCGACGAUAUUACUAAUGAGGAGUACGGAGAAU	chr14:102550990-102551265(-)$1	275	163	201	12.5633
AUUUUUACUGUGUUACUAUGUUGUUUACAGUGGAAAAG	chr1:165728659-165728921(-)$1	262	70	108	13.1661
AAAUCCCGACGAUAUUACUAAUGAGGAGUACGGAGAAU	chr14:102550922-102551190(-)$1	268	88	126	12.5633
UAAUCAUCACUUGGACAGUCAGUCUCGAUGGAGCAAAG	chr5:145882920-145883202(+)$1	282	46	84	13.7188
UUGGUAUUUCGACUAGGAUAAUUGGgaugaagaugagg	chr2:29169374-29169690(+)$1	316	75	113	14.1145
GGUAGUGGUAUAGUUUCUAACAGGCUGCAAAUAUUACC	chr15:44843531-44843821(+)$1	290	226	264	13.9037
CUGCAGUUGUAAGUUAAGAUCUGAAAGAAACUCAGUUU	chr11:32610039-32610323(+)$1	284	231	269	15.5891
ACAUGGCCUGUUUUCUGUCGAGGAGAAUGAGGAAAAUG	chr2:232576551-232576778(+)$1	227	23	61	14.6131
CCUAGGACAGACCCUUGAUCCAGGCAUCUCCCUGUGGC	chr19:19105888-19106180(-)$1	292	23	61	11.8303
gaagaugaguuugaugaugaacaugaugaugaucuuga	chr1:52305891-52306157(-)$1	266	152	190	17.0340
AGUAAUUGUGCUCAGUAUUAAACUAGAGCAGUACUUAC	chr2:170668076-170668357(+)$1	281	28	66	13.4826
CGCUCCGCGCCCUUGGGGACCCUGGGGGCGGGGGUGGG	chr20:42086915-42087255(+)$1	340	252	290	12.3083
AUUAAUGUGCUGGAAUCAAAGGAUACAGACAGUGAUAG	chr7:148514851-148515175(-)$1	324	89	127	12.9772
CUAAAGGAGUUGGGAUUUUGUGUUCAUGUCAAGCAUCC	chr3:156870712-156871053(-)$1	341	184	222	16.2285
ugaUGAUGAUGAAUAAGUUGGUUCUAGCGCAGUUUUUU	chr13:31035369-31035667(-)$1	298	158	196	13.0136
aagaaCUGGAAGAGGUGGAAGACCUGGAGUUUGGCACA	chr17:4575288-4575634(-)$1	346	212	250	13.4813
GCUUGGAGUCACCUUGGAGAUUGGAUUUUUCCAGGCCU	chrX:64956557-64956865(+)$1	308	235	273	12.8752
UUUAUUAAUGAACCACUGAAUGAGGUUCUAGAAAUGGA	chr15:25615919-25616291(-)$1	372	306	344	14.5165
CGCUUCGGUCAGGGUAUCUUUUACCAGACACUAAAGCA	chr12:104340493-104340728(+)$1	235	128	166	12.7022
UGUUCUGCCCACGUCGAGACCUGAGCUGAAAUGGCAGA	chr3:99536635-99536995(+)$1	360	158	196	15.2329
UAAAGUCAAUUUUUGUUACUGUACagaggaggaagaag	chr9:100777576-100777798(+)$1	222	43	81	13.3271

#DB
....((....((.(((.....))).))))..)))))))	chr9:100773513-100773753(+)$1	1	138	176	15.9985
....((....((.(((.....))).))))..)))))))	chr9:100773553-100773771(+)$1	1	98	136	15.9985
..((((((....((((.....))))...))))))))))	chr2:230656763-230657045(-)$1	1	220	258	14.5960
.(((((.(...(.(((.....))).)...).))))).)	chr1:52305957-52306232(-)$1	1	227	265	17.0340
(((...(((((((.((.....)))))))))....))))	chr11:47493615-47493929(-)$1	1	159	197	14.1985
.(...(...(((..(.(....).)..)))...)..).)	chr10:103577576-103577934(-)$1	1	145	183	14.5843
.((((((.(((..((......)))))))))))..)))(	chr15:69072648-69072912(-)$1	1	148	186	11.8456
(((((((((.(((((......))))).)))))))))))	chr14:102449685-102449999(+)$1	1	53	91	13.9392
((..((..(((..(((.....)))..)))...))..))	chr13:98667879-98668137(+)$1	1	206	244	16.9815
((.(((((((....((.....))..)))...)))).))	chr1:200587354-200587684(-)$1	1	214	252	13.8847
(((...(.(((.((((.....)))).))).)...))).	chr1:154155362-154155566(-)$1	1	52	90	15.4266
.(.(((.((.((.(((.....))).)).))))).).).	chr19:54705253-54705497(+)$1	1	44	82	13.4790
(((((((.(((.(.(.(....).).).)))))))))))	chr19:5623271-5623508(+)$1	1	143	181	12.1080
(((((((((((..(((.....)))...))))))))).)	chr5:145850104-145850411(+)$1	1	78	116	17.7720
..((((((.....(((.....)))..))))))))))).	chr2:85768864-85769115(+)$1	1	171	209	13.9737
.((((((((((((.(((...))).)))))))))))).)	chr4:142154863-142155163(+)$1	1	67	105	14.9986
)(((((((((((((((.....)))))....))))))))	chr20:34302044-34302307(-)$1	1	180	218	15.4684
..((((((((..(((......)))...))))....)))	chr6:31729492-31729774(+)$1	1	16	54	13.9897
(((((..(((.(.(((......)))))))..))))).)	chr11:129991472-129991771(+)$1	1	85	123	13.7019
(((((..(.(((.(((......))).))).)..)))))	chr17:34171852-34172137(+)$1	1	111	149	13.6943
((((((..((.(((.(.....).))).)).)).))))(	chr17:76219443-76219762(+)$1	1	133	171	12.5162
((.(((((.....(((.....)))..))))).))..((	chr2:232325323-232325598(-)$1	1	55	93	12.7249
(....((((..(((((.....))))).))))....)))	chr3:170584050-170584361(-)$1	1	76	114	13.6227
...(((((.....(((.....)))....)))))...))	chr10:43297484-43297772(+)$1	1	172	210	16.5392
(((....((..((((......))))..)).)))).)))	chr2:27606297-27606568(-)$1	1	124	162	12.0431
(((((((((((((((......)))))))))...)))))	chr9:100777545-100777748(+)$1	1	18	56	12.9144
(((.....((((((((.....)))..))))))))))))	chr19:8530106-8530369(+)$1	1	95	133	13.4599
((((((...(...(((....)))..)...))))))).)	chr12:132198558-132198893(+)$1	1	188	226	14.0704
(((.((((((((((((......)))))))))))....)	chr1:150198838-150199203(-)$1	1	47	85	15.3153
..(((....((..(((......)))..))..))).)))	chr8:30945292-30945537(+)$1	1	147	185	14.9845
...(((((...(((((.....))))))).)))...)))	chr14:39649884-39650194(+)$1	1	264	302	13.2063
(...((.(((((..((.....))...))))).)).)))	chr16:2808893-2809149(+)$1	1	173	211	14.5535
..((..(((((...((.....))...)))))..)))))	chr15:66791638-66791889(-)$1	1	150	188	14.0873
.(...((((....(((.....)))...)))).......	chr10:120809213-120809515(-)$1	1	125	163	16.0702
((((..(.((((((((((...))))))))))).)))))	chr8:117861117-117861339(-)$1	1	50	88	14.4388
...(((((((((.((......)).))))))))))))))	chr17:48820972-48821274(+)$1	1	39	77	14.2619
(((((.(.(((((((......)))))))...).)))))	chr8:124382090-124382367(-)$1	1	32	70	12.7971
.(((((((((....(((....)))..))))))))).((	chr3:9512207-9512506(+)$1	1	64	102	11.7791
(((..(((((...((......))....)))))..))))	chr7:142651446-142651714(-)$1	1	115	153	13.4003
((.(((((((....(((....)))...)).))).)).)	chr14:102550990-102551265(-)$1	1	163	201	12.5633
.(((((((((((..((......)).)))))))))))..	chr1:165728659-165728921(-)$1	1	70	108	13.1661
((.(((((((....(((....)))...)).))).)).)	chr14:102550922-102551190(-)$1	1	88	126	12.5633
(..(((((....((((.....)))).))))).......	chr5:145882920-145883202(+)$1	1	46	84	13.7188
(((...(((((.((((.....))))..))))).))).)	chr2:29169374-29169690(+)$1	1	75	113	14.1145
(((((((...((((((.....))))))....)))))))	chr15:44843531-44843821(+)$1	1	226	264	13.9037
(((.((((.....(((.....)))....))))))))))	chr11:32610039-32610323(+)$1	1	231	269	15.5891
.(((..((((((((((.....))))))).)))...)))	chr2:232576551-232576778(+)$1	1	23	61	14.6131
((((((..(((..((((...))))..))).)))).)))	chr19:19105888-19106180(-)$1	1	23	61	11.8303
.(((((.(...(.(((.....))).)...).))))).)	chr1:52305891-52306157(-)$1	1	152	190	17.0340
.((((...((((((((.....))).)))))....))))	chr2:170668076-170668357(+)$1	1	28	66	13.4826
((((((.((((((((((...)))))))))))))))).)	chr20:42086915-42087255(+)$1	1	252	290	12.3083
((...(((.(((..(((....))).)))))))))...)	chr7:148514851-148515175(-)$1	1	89	127	12.9772
((....((....((((.....))))...)).)))))))	chr3:156870712-156871053(-)$1	1	184	222	16.2285
(..((.....((((......))))...))..)))))))	chr13:31035369-31035667(-)$1	1	158	196	13.0136
..(((((.....((((.....))))..)))))..).((	chr17:4575288-4575634(-)$1	1	212	250	13.4813
((((((((...((.........))....))))))))))	chrX:64956557-64956865(+)$1	1	235	273	12.8752
((((((...(((((.(.....).)))))....))))))	chr15:25615919-25616291(-)$1	1	306	344	14.5165
.((((..(((..((((.....)))).)))....)))).	chr12:104340493-104340728(+)$1	1	128	166	12.7022
(..((((((((..(((.....)))..))....))))))	chr3:99536635-99536995(+)$1	1	158	196	15.2329
(....((..(((((((......)))))))..))...))	chr9:100777576-100777798(+)$1	1	43	81	13.3271

#PSSM
c : 0.16	g : 0.11	[ : 0.09	! : 0.08	e : 0.08	d : 0.08	# : 0.06	= : 0.06	f : 0.05	: : 0.05	" : 0.03	$ : 0.03	i : 0.03	b : 0.01	+ : 0.01	
! : 0.11	e : 0.11	c : 0.11	d : 0.11	# : 0.09	g : 0.09	= : 0.08	f : 0.06	a : 0.05	" : 0.05	i : 0.05	b : 0.01	$ : 0.01	
# : 0.11	e : 0.11	f : 0.09	g : 0.09	d : 0.09	= : 0.08	[ : 0.08	c : 0.08	" : 0.06	! : 0.06	i : 0.05	$ : 0.01	b : 0.01	
e : 0.15	" : 0.11	# : 0.09	f : 0.09	d : 0.09	= : 0.08	c : 0.06	g : 0.06	i : 0.06	b : 0.06	! : 0.03	[ : 0.03	$ : 0.01	
e : 0.15	b : 0.13	f : 0.09	" : 0.09	d : 0.09	= : 0.08	g : 0.06	# : 0.06	! : 0.06	c : 0.05	i : 0.05	$ : 0.01	a : 0.01	
e : 0.11	b : 0.09	f : 0.09	= : 0.09	d : 0.09	! : 0.09	c : 0.08	" : 0.06	g : 0.06	i : 0.05	# : 0.05	$ : 0.03	a : 0.01	[ : 0.01	
e : 0.11	= : 0.09	! : 0.09	[ : 0.08	d : 0.08	# : 0.06	f : 0.06	" : 0.06	i : 0.06	c : 0.06	g : 0.05	a : 0.05	b : 0.05	$ : 0.03	
= : 0.11	c : 0.11	e : 0.11	" : 0.08	[ : 0.08	! : 0.06	b : 0.06	i : 0.06	d : 0.06	# : 0.05	f : 0.05	a : 0.05	$ : 0.05	g : 0.01	
c : 0.15	" : 0.13	= : 0.11	# : 0.09	$ : 0.09	e : 0.09	b : 0.08	i : 0.06	d : 0.05	g : 0.03	[ : 0.03	f : 0.01	! : 0.01	
c : 0.18	e : 0.11	# : 0.09	$ : 0.09	= : 0.09	" : 0.08	b : 0.08	g : 0.06	i : 0.06	[ : 0.03	! : 0.03	d : 0.01	a : 0.01	
# : 0.13	c : 0.13	e : 0.11	" : 0.09	= : 0.09	b : 0.08	$ : 0.08	g : 0.06	! : 0.06	i : 0.05	[ : 0.03	f : 0.01	d : 0.01	
# : 0.13	! : 0.13	e : 0.13	$ : 0.08	= : 0.08	b : 0.06	g : 0.06	c : 0.06	a : 0.05	[ : 0.05	" : 0.05	d : 0.03	i : 0.03	f : 0.01	
! : 0.16	d : 0.15	[ : 0.13	e : 0.11	# : 0.08	g : 0.06	$ : 0.06	= : 0.06	" : 0.05	c : 0.03	a : 0.01	i : 0.01	f : 0.01	b : 0.01	
c : 0.35	d : 0.16	e : 0.08	! : 0.06	# : 0.06	[ : 0.05	b : 0.05	= : 0.05	g : 0.05	i : 0.01	" : 0.01	f : 0.01	r : 0.01	
c : 0.41	d : 0.15	b : 0.13	e : 0.06	= : 0.05	g : 0.05	a : 0.03	[ : 0.03	i : 0.01	f : 0.01	o : 0.01	r : 0.01	
c : 0.39	o : 0.15	d : 0.13	b : 0.08	e : 0.05	= : 0.05	[ : 0.03	a : 0.03	g : 0.03	f : 0.01	r : 0.01	
n : 0.55	o : 0.24	c : 0.08	a : 0.03	= : 0.03	m : 0.01	d : 0.01	r : 0.01	
n : 0.55	o : 0.24	m : 0.11	l : 0.05	= : 0.01	r : 0.01	
n : 0.55	o : 0.24	m : 0.11	l : 0.06	r : 0.01	
n : 0.55	o : 0.24	m : 0.11	l : 0.06	r : 0.01	
n : 0.55	o : 0.23	m : 0.09	c : 0.03	d : 0.03	l : 0.01	= : 0.01	r : 0.01	
c : 0.36	d : 0.16	b : 0.11	o : 0.09	a : 0.06	e : 0.06	= : 0.03	g : 0.03	i : 0.01	f : 0.01	r : 0.01	
c : 0.41	d : 0.16	b : 0.15	] : 0.06	e : 0.06	= : 0.05	g : 0.05	i : 0.01	f : 0.01	
c : 0.41	d : 0.16	e : 0.08	g : 0.06	= : 0.05	a : 0.03	2 : 0.03	] : 0.03	3 : 0.03	b : 0.03	i : 0.01	4 : 0.01	f : 0.01	
2 : 0.16	] : 0.15	d : 0.13	3 : 0.13	c : 0.08	e : 0.08	g : 0.06	= : 0.06	4 : 0.06	i : 0.03	f : 0.01	
2 : 0.19	3 : 0.16	e : 0.09	a : 0.08	= : 0.08	g : 0.06	c : 0.06	] : 0.06	4 : 0.06	b : 0.05	i : 0.03	f : 0.01	
3 : 0.18	c : 0.15	e : 0.11	b : 0.08	= : 0.08	4 : 0.08	g : 0.06	] : 0.06	2 : 0.06	f : 0.05	i : 0.05	
b : 0.16	c : 0.16	e : 0.16	= : 0.09	3 : 0.08	4 : 0.08	g : 0.06	i : 0.06	d : 0.05	f : 0.03	] : 0.01	
b : 0.16	e : 0.16	c : 0.15	= : 0.11	3 : 0.08	i : 0.06	4 : 0.06	d : 0.06	f : 0.05	g : 0.03	] : 0.03	
e : 0.16	= : 0.11	] : 0.11	2 : 0.09	4 : 0.08	3 : 0.06	c : 0.06	i : 0.06	d : 0.06	f : 0.05	a : 0.03	g : 0.03	b : 0.03	
e : 0.15	= : 0.11	2 : 0.09	4 : 0.09	c : 0.09	d : 0.09	3 : 0.08	f : 0.06	] : 0.05	i : 0.05	a : 0.03	g : 0.03	b : 0.01	
e : 0.11	4 : 0.11	= : 0.11	c : 0.11	g : 0.08	f : 0.08	3 : 0.06	d : 0.06	i : 0.06	2 : 0.03	b : 0.03	] : 0.03	> : 0.03	a : 0.03	
g : 0.11	= : 0.11	e : 0.08	4 : 0.08	2 : 0.08	c : 0.08	f : 0.06	b : 0.06	3 : 0.06	i : 0.06	] : 0.06	d : 0.05	> : 0.03	a : 0.01	
g : 0.11	= : 0.11	e : 0.09	f : 0.08	4 : 0.08	d : 0.08	3 : 0.08	2 : 0.06	b : 0.06	i : 0.06	] : 0.05	c : 0.05	> : 0.03	
g : 0.11	e : 0.11	= : 0.11	f : 0.08	3 : 0.08	c : 0.06	d : 0.06	i : 0.06	] : 0.06	4 : 0.05	b : 0.05	2 : 0.03	a : 0.03	> : 0.03	: : 0.01	
e : 0.13	c : 0.13	= : 0.13	g : 0.11	d : 0.09	f : 0.08	i : 0.05	: : 0.05	3 : 0.05	] : 0.03	> : 0.03	b : 0.03	a : 0.01	2 : 0.01	4 : 0.01	
] : 0.18	c : 0.16	e : 0.13	g : 0.09	= : 0.09	d : 0.09	f : 0.06	> : 0.03	i : 0.03	a : 0.01	4 : 0.01	b : 0.01	5 : 0.01	3 : 0.01	
c : 0.18	d : 0.16	= : 0.13	e : 0.11	g : 0.08	f : 0.06	b : 0.06	: : 0.05	a : 0.03	> : 0.03	i : 0.03	2 : 0.01	5 : 0.01	

#score	845.7028668864201
#seq	60
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF854NXI_HNRNPU_UTR_m2_run1.txt

#BEAR
[bb&&&&&&&eeeeemmmmeeeee333bb]ccc]ccc]bb	chr11:65311582-65311845(-)$1	263	32	72	26.9186
gg(((((((((cccdddd[eeeee[dddd[ammmma]ddd	chr17:76818945-76819236(-)$1	291	60	100	24.5040
++++++++++eeeeemmmmeeeee22eeeee4444ggggg	chr16:30014035-30014305(+)$1	270	174	214	26.2134

#otherMatches

#Seq PSSM
GUCAGGCAAGCUCGGAGGACUGAGAGGGAGGCCACCAAGC	chr11:65311582-65311845(-)$1	263	32	72	26.9186
CAGAUGAGAGACUGAGGUGUGCAUGUUCUGUGGGAGGGGA	chr17:76818945-76819236(-)$1	291	60	100	24.5040
AGAAUGAGAGGCCGCAUUUGCGGUGGUCuggaguacagga	chr16:30014035-30014305(+)$1	270	174	214	26.2134

#DB
.((.......(((((....)))))...)).))).))).))	chr11:65311582-65311845(-)$1	1	32	72	26.9186
((.........(((((((.(((((.((((.(....).)))	chr17:76818945-76819236(-)$1	1	60	100	24.5040
..........(((((....)))))..)))))....)))))	chr16:30014035-30014305(+)$1	1	174	214	26.2134

#PSSM
[ : 0.33	g : 0.33	+ : 0.33	
b : 0.33	g : 0.33	+ : 0.33	
b : 0.33	( : 0.33	+ : 0.33	
& : 0.33	( : 0.33	+ : 0.33	
& : 0.33	( : 0.33	+ : 0.33	
& : 0.33	( : 0.33	+ : 0.33	
& : 0.33	( : 0.33	+ : 0.33	
& : 0.33	( : 0.33	+ : 0.33	
& : 0.33	( : 0.33	+ : 0.33	
& : 0.33	( : 0.33	+ : 0.33	
e : 0.66	( : 0.33	
e : 0.66	c : 0.33	
e : 0.66	c : 0.33	
e : 0.66	c : 0.33	
e : 0.66	d : 0.33	
m : 0.66	d : 0.33	
m : 0.66	d : 0.33	
m : 0.66	d : 0.33	
m : 0.66	[ : 0.33	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
3 : 0.33	[ : 0.33	2 : 0.33	
3 : 0.33	d : 0.33	2 : 0.33	
3 : 0.33	d : 0.33	e : 0.33	
b : 0.33	d : 0.33	e : 0.33	
b : 0.33	d : 0.33	e : 0.33	
] : 0.33	[ : 0.33	e : 0.33	
c : 0.33	a : 0.33	e : 0.33	
c : 0.33	m : 0.33	4 : 0.33	
c : 0.33	m : 0.33	4 : 0.33	
] : 0.33	m : 0.33	4 : 0.33	
c : 0.33	m : 0.33	4 : 0.33	
c : 0.33	a : 0.33	g : 0.33	
c : 0.33	] : 0.33	g : 0.33	
] : 0.33	d : 0.33	g : 0.33	
b : 0.33	d : 0.33	g : 0.33	
b : 0.33	d : 0.33	g : 0.33	

#score	77.63618296669998
#seq	3
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_UTR_m1_run1.txt

#BEAR
eeee[bb[a!!bb!!cccooooooccc]bb]a]bb]eeee	chr12:123465318-123465588(+)$1	270	1	41	13.0568
3dddd]ccc==========oooooo==========::eee	chr22:38203079-38203290(+)$1	211	118	158	14.6195
eeeee[ccc!!dddd[cccooooooccc]dddd22ccc22	chr8:145067171-145067444(+)$1	273	167	207	14.4199
]ccciiiiiiiii"""cccooooooccc22iiiiiiiii:	chr17:39975818-39976074(+)$1	256	150	190	17.7486
ccc:ggggggg[a!!ccc[allla]ccc22a]gggggggC	chr16:75285374-75285714(-)$1	340	126	166	12.9773
fffff[ccc[dddd"""bboooooobb]dddd]ccc]fff	chr8:27468385-27468649(-)$1	264	35	75	12.9961
iiiiii"""a[dddd"""cccmmmmccc22dddd]a333i	chr14:23779664-23779880(+)$1	216	13	53	12.8898
3dddd]ccc==========oooooo==========::eee	chr22:38203065-38203279(+)$1	214	132	172	14.6195
f:::a[ggggggg[bbcccooooooccc333bb]gggggg	chr6:44122689-44122934(+)$1	245	147	187	13.5823
E==========[a[ddddoooooodddd22a]========	chr12:58005533-58005817(+)$1	284	13	53	15.7596
============%%%%%%cccmmmmccc4444========	chr20:33872316-33872617(-)$1	301	126	166	11.9818
""eeeee[a"""ccc[acccnnnnnccc]a]ccca]eeee	chr14:24615703-24615989(-)$1	286	28	68	13.5886
eeee[ggggggg!!bb[ccclllcccbb22ggggggg22e	chr9:139687420-139687724(+)$1	304	170	210	12.9665
c[cccgggggggffffffaooooooa]ffffff]gggggg	chr19:2096764-2097047(+)$1	283	154	194	14.5482
ffffff=============nnnnn=============]ff	chr17:74261729-74262071(+)$1	342	23	63	15.9289
hhhhhh"""dddd####bboooooobb333ddddhhhhhh	chr2:118867073-118867367(+)$1	294	114	154	13.0278
22ccc:a[==========aooooooa]==========]a:	chr19:7978198-7978477(+)$1	279	208	248	15.5862
dddd[==========[ddddmmmmdddd==========44	chr19:40719010-40719282(+)$1	272	210	250	13.8854
::ccc[a!!bb[ddddcccooooooccc333dddd]bb22	chr16:87738790-87739094(-)$1	304	245	285	12.7818
eccc[ccc[ccc!!eeeeennnnneeeee22ccc]ccccc	chr1:36789183-36789465(+)$1	282	142	182	12.7819
ccc"""iiiiiiiiiddddnnnnndddd]iiiiiiiii33	chr5:137878182-137878430(-)$1	248	81	121	14.6143
ffiiiiiiiii!!bb[ccclllccc]bb22iiiiiiiii]	chr9:35756635-35756935(+)$1	300	12	52	14.0868
diiiiiiiii!!bbbb[bbnnnnnbb]bb]bb333iiiii	chr1:11905745-11905998(+)$1	253	104	144	12.8898
b[eeeee[bb[gggggggannnnna]ggggggg]bb]eee	chr17:73701706-73701981(+)$1	275	43	83	12.5706
cc[ccc"""a####a[cccnnnnnccc]a333a333ccc]	chr17:235820-236109(-)$1	289	187	227	15.6036
f[ccc$$$$$ccc[a!!cccnnnnnccc22a]ccccccff	chr16:2551228-2551472(+)$1	244	108	148	13.6397
b[dddd"""dddd[eeeeeooooooeeeee]dddddddd]	chrX:133930873-133931138(-)$1	265	179	219	12.4578
"""iiiiiiiii!!eeeeeooooooeeeee4444iiiiii	chr17:76794268-76794534(-)$1	266	212	252	16.2917
==========####eeeeeooooooeeeee333=======	chr3:100428492-100428742(+)$1	250	56	96	17.4244
ee::eeeee[ggggggg[aooooooa]ggggggg]eeeee	chr13:115000276-115000543(+)$1	267	109	149	12.6103
"ffffff[ccc[bb!!cccooooooccc333bb]ccc22f	chr20:33432967-33433231(-)$1	264	142	182	15.5541
ggggggg[ccc[bb[a[bbnnnnnbb]a]bb]cccggggg	chr1:183441977-183442256(+)$1	279	183	223	12.8154
b"""=============[bblllbb]=============3	chr20:4680562-4680817(+)$1	255	33	73	15.0961
====:ccc!!eeeeeddddoooooodddd]eeeee4444c	chr17:7082343-7082598(-)$1	255	170	210	12.3614
gggggg[===========[ccclllccc===========2	chr17:4871258-4871521(-)$1	263	98	138	15.8535
cccbbccc!!ccc[ccc[ammmma]ccc22ccc]ccc333	chr19:50363530-50363843(+)$1	313	48	88	13.4236
hhhhhh[ccc####eeeeeooooooeeeeeccc]hhhhhh	chr16:87738562-87738809(-)$1	247	153	193	13.0620
eee===========[cccpppppppccc===========]	chr20:33432937-33433167(-)$1	230	38	78	13.4299
ee[eeeee!!ccc[ccc[aooooooa]ccc]ccc22eeee	chr17:7211147-7211452(+)$1	305	154	194	14.6219
=============[gggggggmmmmggggggg========	chr1:24791578-24791909(+)$1	331	271	311	14.8096
============!!eeeeerrrrrrrrreeeee4444===	chr9:131583610-131583909(-)$1	299	217	257	13.2231
a[a[dddd[abba[eeeeeooooooeeeee22a]bb]a22	chr3:24535986-24536274(-)$1	288	80	120	12.9570
]cccbb!!ccc[agggggggnnnnnggggggg333a]ccc	chr16:67977244-67977463(-)$1	219	127	167	13.3093
dddd[ffffff[ccc[cccooooooccc]ccc]ffffff]	chr19:54379262-54379522(+)$1	260	90	130	14.2733
dddd!!bb!!eeeee[cccooooooccc]eeeeebbdddd	chr20:57475255-57475528(+)$1	273	51	91	13.0447
ggggoooooogggggggbboooooobbggggggg[eeeee	chr14:77935596-77935892(+)$1	296	24	64	12.9836
eee[bb!!ffffff"""bboooooobb333ffffff]bb]	chr19:18478047-18478317(+)$1	270	194	234	13.3373
gggg[bb[a[ccc"""cccbbnnnnnbb]ccc22ccc]a]	chr16:4388821-4389073(-)$1	252	41	81	12.1256
gggggggg"""ccc[bbbbnnnnnbb]bb]ccc]gggggg	chr4:2935685-2935940(-)$1	255	201	241	13.0149
fffff[===========qqqqqqqq===========]fff	chr22:45127940-45128246(+)$1	306	69	109	12.3838
=====================mmmm===============	chr16:29821948-29822203(+)$1	255	30	70	16.4520
iii####eeeee[ffffffooooooffffff22eeeee33	chrX:131622884-131623133(-)$1	249	11	51	12.5489
ggggg[dddd[bb####cccnnnnnccc22bb]ddddggg	chr19:989861-990180(+)$1	319	89	129	12.7149
ccbb[ggggggg"""ccc[cccmmmmccc]ccc4444ggg	chr19:42788122-42788370(+)$1	248	86	126	11.7805
bb!!eeeeeeeeee[ccccccmmmmccc22ccc]eeeee]	chr19:14529762-14530026(-)$1	264	82	122	11.0957
fffeeeee[cccbbeeeeeooooooeeeee]bb]ccc22e	chr20:57475013-57475273(+)$1	260	107	147	12.8491

#otherMatches

#Seq PSSM
CCUUGAGGCGGCGAGGCCGCGAAGGGCGCGGGGCUGGAGG	chr12:123465318-123465588(+)$1	270	1	41	13.0568
UCUGUGUGCAUGUGUGUGUUUGUGUAUAUAUACAUAUCUA	chr22:38203079-38203290(+)$1	211	118	158	14.6195
GGGAUUGAGCCAAGAGGUGAGGGUGCACGUCUUCCCUCCU	chr8:145067171-145067444(+)$1	273	167	207	14.4199
ACUGCCCAUUGUGUCUAGGCCACCCCCUCCCACAGUGGGA	chr17:39975818-39976074(+)$1	256	150	190	17.7486
CGCGCGGCCGGGCAUGCUGGGAUCGGGCUGGGCCGGCUGG	chr16:75285374-75285714(-)$1	340	126	166	12.9773
CGUCUGCUGGGGUGAAGGUUUAGGUGCACAUUGCAGAGGA	chr8:27468385-27468649(-)$1	264	35	75	12.9961
GUCCUAGAAUGUGGCAACGUAGUUGUGCUCGCCAGAACGU	chr14:23779664-23779880(+)$1	216	13	53	12.8898
UCUGUGUGCAUGUGUGUGUUUGUGUAUAUAUACAUAUCUA	chr22:38203065-38203279(+)$1	214	132	172	14.6195
CAAAGAGGGGUGCAGAGGGAGUUCCCCCAGAUCAGUACCC	chr6:44122689-44122934(+)$1	245	147	187	13.5823
CCCCCCCUCCCACAGCCUGGACCGGGGUAGGAGGGAGGGG	chr12:58005533-58005817(+)$1	284	13	53	15.7596
CGGUCCUGGGUCGGGAGGGGUGGGGGCCAGAGGAUUCAGG	chr20:33872316-33872617(-)$1	301	126	166	11.9818
CUGGCUGGGAAUGGCUGAGGGGCUACCUACUGCUUGCGGC	chr14:24615703-24615989(-)$1	286	28	68	13.5886
GGGUCGAAGGGGCCUGUACACUCUGUCAUUUCCUUUCUAG	chr9:139687420-139687724(+)$1	304	170	210	12.9665
UUGGCCGGCGGCGGGCCGGGACGGGCAUGGCCCUGCUGCU	chr19:2096764-2097047(+)$1	283	154	194	14.5482
ccgggcggcggcgggggcggggAGCGCUCCUGUUGUCGGC	chr17:74261729-74262071(+)$1	342	23	63	15.9289
CGUGUGUGUUGGAGUGAGUGAGAGAAUGUGUCUGUGCAUG	chr2:118867073-118867367(+)$1	294	114	154	13.0278
gggcugagggugggggugcgagguggUCACUCCCAUCGUG	chr19:7978198-7978477(+)$1	279	208	248	15.5862
UGGUGGCCCCUGGGGCGUGGGGGGUCAUUUCCAGGGGCAG	chr19:40719010-40719282(+)$1	272	210	250	13.8854
UAGGGCGUGAGCGGCCGGCACGAAAGCCCAGGGCCUCUGU	chr16:87738790-87739094(-)$1	304	245	285	12.7818
cgggaggagggAGAGCCCGGCCCGCGGGCCGUCCGUCCCC	chr1:36789183-36789465(+)$1	282	142	182	12.7819
GAGAAGGGGUCCUUUCCCCGCAUGGGGGUAAGGGGCCCGC	chr5:137878182-137878430(-)$1	248	81	121	14.6143
GGGGUCCAGGGGACAUCCUGGAAGGCUGGGCCCUGGGCCA	chr9:35756635-35756935(+)$1	300	12	52	14.0868
CAUGGGGUGGGAGAGGCGAGGAAGUCACCAUCAAACCACU	chr1:11905745-11905998(+)$1	253	104	144	12.8898
GGCGGGCACCGCCUCCUCCUGGGUGUGAGGAGGAGGGGCC	chr17:73701706-73701981(+)$1	275	43	83	12.5706
gcggcucagcggcggggccggcggggcgcacagggaggcg	chr17:235820-236109(-)$1	289	187	227	15.6036
GUGGGAACGUGCAGCUAAGGGUGGGCCUGUGGUGCCCCCU	chr16:2551228-2551472(+)$1	244	108	148	13.6397
GGGGCUGGACCGGGUCCCCGAGCAUGGGGAGCUGGAGCCG	chrX:133930873-133931138(-)$1	265	179	219	12.4578
guguguguCCUAGUCACUUGGAGAAGGgugugugugggau	chr17:76794268-76794534(-)$1	266	212	252	16.2917
GCGGCCUCCGCAAGCCGGUAUGGCCACUGGAGACGGGGGU	chr3:100428492-100428742(+)$1	250	56	96	17.4244
GGGUGGGGGGUGCGGGUGUGGGUGGGGACCUGCGGCCUUC	chr13:115000276-115000543(+)$1	267	109	149	12.6103
UGUUCCCAGAGUCCCUCCUUCUCCCAGGUUUGGUCUCAGG	chr20:33432967-33433231(-)$1	264	142	182	15.5541
ACUCGUGGUGUGGCGUGGGAUUGGUUGGAGCGAUGCAUGA	chr1:183441977-183442256(+)$1	279	183	223	12.8154
AUCUCUUUCCUCAUCUUCCUGAUAGUGGGAUGAGGAAGGU	chr20:4680562-4680817(+)$1	255	33	73	15.0961
UGGGUGGGAAACAUCAGAGGAUGGAUUCUGGAUGUCAGGC	chr17:7082343-7082598(-)$1	255	170	210	12.3614
GCCGCGGGGAGGGCUGCACGGCCGGGCUUGUGGUUCUCUA	chr17:4871258-4871521(-)$1	263	98	138	15.8535
CCCCCGCAGAGACUGGUGAGUGGUGACCCUGUCAUGUACA	chr19:50363530-50363843(+)$1	313	48	88	13.4236
GUGGGCGGGCGUACCAGGGGAGGCACUCUGGCCGGCCCGC	chr16:87738562-87738809(-)$1	247	153	193	13.0620
GCAGCGGGGUGGGGCGGGGUCUCUGCUCCCCCACUUUGCA	chr20:33432937-33433167(-)$1	230	38	78	13.4299
CGAGCCGCGAGGCAGCCACGCGGGAGAGGCCGCCAGGCGG	chr17:7211147-7211452(+)$1	305	154	194	14.6219
guauguauauguguguuuguguguuuacaaacuaugugua	chr1:24791578-24791909(+)$1	331	271	311	14.8096
CGGUGCACUGGGGACCUGCAUGGGGAAGGCGGGAGAGCUC	chr9:131583610-131583909(-)$1	299	217	257	13.2231
CCGGCUCCAGGGCACUGGUAAUUUGGCUAGAGGACCGCGC	chr3:24535986-24536274(-)$1	288	80	120	12.9570
AGCACCUCAGCGCCUUCCCUUCCUCAGGGAAGCCUGGGCU	chr16:67977244-67977463(-)$1	219	127	167	13.3093
CAGCUGUUCUCUUUUGCCCGUAGGUGGGAGGGUGGGGAUU	chr19:54379262-54379522(+)$1	260	90	130	14.2733
GACAAGUCCUUAGUGAGCAACCUACUGUGUACUAGAUGUC	chr20:57475255-57475528(+)$1	273	51	91	13.0447
GGACACUUCAGUCCAGCUCUCUCCUGACUGGGGCUUGCGA	chr14:77935596-77935892(+)$1	296	24	64	12.9836
GGGAACAGGGGUGCAGGGACAGUGAUCAGGGCACCUGGUA	chr19:18478047-18478317(+)$1	270	194	234	13.3373
UGCCAGAGGACCUGcagggccacuaaggaccccaaggcug	chr16:4388821-4389073(-)$1	252	41	81	12.1256
UGUGGGGGUAUGCCAGGCCCCGGAGGACUCGGCUUCCCCG	chr4:2935685-2935940(-)$1	255	201	241	13.0149
CGGGGUGGAGGGGCCUGAGGGUCGGCAGGUCUCUUCCCCC	chr22:45127940-45128246(+)$1	306	69	109	12.3838
UUUCCUUUUUUUUUUUUUUCCAGGGGGAGGGAGGAGAGGA	chr16:29821948-29822203(+)$1	255	30	70	16.4520
GUUCUGGAGGUGGGGCGGGCUUUAAUUUGCUUAUAUCUAA	chrX:131622884-131623133(-)$1	249	11	51	12.5489
GAGAGGAGGCGCCAAGGCCCCUGGCGGGAAGGGGCUUCUC	chr19:989861-990180(+)$1	319	89	129	12.7149
uggcggggcggggaggcgguggugguucggcgcggggcUC	chr19:42788122-42788370(+)$1	248	86	126	11.7805
UCAGAGCGCUGUGUGUUGGCCGUUGGGCACCGGGGCGCAU	chr19:14529762-14530026(-)$1	264	82	122	11.0957
AUCUGAGGGGGGAGGGGGGAUGGGGCCCCUGCUACCUGAC	chr20:57475013-57475273(+)$1	260	107	147	12.8491

#DB
((((.((.(..((..(((......))).)).).)).))))	chr12:123465318-123465588(+)$1	1	1	41	13.0568
.)))).)))((((((((((......))))))))))..(((	chr22:38203079-38203290(+)$1	1	118	158	14.6195
(((((.(((..((((.(((......))).))))..)))..	chr8:145067171-145067444(+)$1	1	167	207	14.4199
.)))(((((((((...(((......)))..))))))))).	chr17:39975818-39976074(+)$1	1	150	190	17.7486
))).(((((((.(..(((.(...).)))..).)))))))(	chr16:75285374-75285714(-)$1	1	126	166	12.9773
(((((.(((.((((...((......)).)))).))).)))	chr8:27468385-27468649(-)$1	1	35	75	12.9961
((((((...(.((((...(((....)))..)))).)...)	chr14:23779664-23779880(+)$1	1	13	53	12.8898
.)))).)))((((((((((......))))))))))..(((	chr22:38203065-38203279(+)$1	1	132	172	14.6195
)...(.(((((((.(((((......)))...)).))))))	chr6:44122689-44122934(+)$1	1	147	187	13.5823
(((((((((((.(.((((......))))..).))))))))	chr12:58005533-58005817(+)$1	1	13	53	15.7596
((((((((((((......(((....)))....))))))))	chr20:33872316-33872617(-)$1	1	126	166	11.9818
..(((((.(...(((.((((.....))).).)))).))))	chr14:24615703-24615989(-)$1	1	28	68	13.5886
((((.(((((((..((.(((...)))))..)))))))..)	chr9:139687420-139687724(+)$1	1	170	210	12.9665
(.(((((((((((((((((......).)))))).))))))	chr19:2096764-2097047(+)$1	1	154	194	14.5482
(((((((((((((((((((.....))))))))))))).))	chr17:74261729-74262071(+)$1	1	23	63	15.9289
((((((...((((....((......))...))))))))))	chr2:118867073-118867367(+)$1	1	114	154	13.0278
..))).(.(((((((((((......).)))))))))).).	chr19:7978198-7978477(+)$1	1	208	248	15.5862
((((.((((((((((.((((....))))))))))))))..	chr19:40719010-40719282(+)$1	1	210	250	13.8854
..(((.(..((.(((((((......)))...)))).))..	chr16:87738790-87739094(-)$1	1	245	285	12.7818
)(((.(((.(((..(((((.....)))))..))).)))))	chr1:36789183-36789465(+)$1	1	142	182	12.7819
(((...(((((((((((((.....)))).)))))))))..	chr5:137878182-137878430(-)$1	1	81	121	14.6143
(((((((((((..((.(((...))).))..))))))))).	chr9:35756635-35756935(+)$1	1	12	52	14.0868
((((((((((..((((.((.....)).)).))...)))))	chr1:11905745-11905998(+)$1	1	104	144	12.8898
(.(((((.((.((((((((.....).))))))).)).)))	chr17:73701706-73701981(+)$1	1	43	83	12.5706
((.(((...(....(.(((.....))).)...)...))).	chr17:235820-236109(-)$1	1	187	227	15.6036
(.(((.....(((.(..(((.....)))..).))))))))	chr16:2551228-2551472(+)$1	1	108	148	13.6397
(.((((...((((.(((((......))))).)))))))).	chrX:133930873-133931138(-)$1	1	179	219	12.4578
...(((((((((..(((((......)))))....))))))	chr17:76794268-76794534(-)$1	1	212	252	16.2917
((((((((((....(((((......)))))...)))))))	chr3:100428492-100428742(+)$1	1	56	96	17.4244
))..(((((.(((((((.(......).))))))).)))))	chr13:115000276-115000543(+)$1	1	109	149	12.6103
.((((((.(((.((..(((......)))...)).)))..)	chr20:33432967-33433231(-)$1	1	142	182	15.5541
(((((((.(((.((.(.((.....)).).)).))))))))	chr1:183441977-183442256(+)$1	1	183	223	12.8154
(...(((((((((((((.((...)).))))))))))))).	chr20:4680562-4680817(+)$1	1	33	73	15.0961
)))).(((..(((((((((......)))).)))))....)	chr17:7082343-7082598(-)$1	1	170	210	12.3614
((((((.(((((((((((.(((...)))))))))))))).	chr17:4871258-4871521(-)$1	1	98	138	15.8535
((((((((..(((.(((.(....).)))..))).)))...	chr19:50363530-50363843(+)$1	1	48	88	13.4236
((((((.(((....(((((......)))))))).))))))	chr16:87738562-87738809(-)$1	1	153	193	13.0620
((((((((((((((.(((.......)))))))))))))).	chr20:33432937-33433167(-)$1	1	38	78	13.4299
((.(((((..(((.(((.(......).))).)))..))))	chr17:7211147-7211452(+)$1	1	154	194	14.6219
(((((((((((((.(((((((....)))))))))))))))	chr1:24791578-24791909(+)$1	1	271	311	14.8096
((((((((((((..(((((.........)))))....)))	chr9:131583610-131583909(-)$1	1	217	257	13.2231
(.(.((((.((((.(((((......)))))..).)).)..	chr3:24535986-24536274(-)$1	1	80	120	12.9570
.)))((..(((.((((((((.....)))))))...).)))	chr16:67977244-67977463(-)$1	1	127	167	13.3093
((((.((((((.(((.(((......))).))).)))))).	chr19:54379262-54379522(+)$1	1	90	130	14.2733
((((..((..(((((.(((......))).)))))))))))	chr20:57475255-57475528(+)$1	1	51	91	13.0447
((((......)))))))((......))(((((((.(((((	chr14:77935596-77935892(+)$1	1	24	64	12.9836
(((.((..((((((...((......))...)))))).)).	chr19:18478047-18478317(+)$1	1	194	234	13.3373
((((.((.(.(((...(((((.....)).)))..))).).	chr16:4388821-4389073(-)$1	1	41	81	12.1256
((((((((...(((.((((.....)).)).))).))))))	chr4:2935685-2935940(-)$1	1	201	241	13.0149
(((((.(((((((((((........))))))))))).)))	chr22:45127940-45128246(+)$1	1	69	109	12.3838
(((((((((((((((((((((....)))))))))))))))	chr16:29821948-29822203(+)$1	1	30	70	16.4520
(((....(((((.((((((......))))))..)))))..	chrX:131622884-131623133(-)$1	1	11	51	12.5489
(((((.((((.((....(((.....)))..)).)))))))	chr19:989861-990180(+)$1	1	89	129	12.7149
((((.(((((((...(((.(((....))).)))....)))	chr19:42788122-42788370(+)$1	1	86	126	11.7805
((..((((((((((.((((((....)))..))).))))).	chr19:14529762-14530026(-)$1	1	82	122	11.0957
((((((((.((((((((((......))))).)).)))..)	chr20:57475013-57475273(+)$1	1	107	147	12.8491

#PSSM
e : 0.14	f : 0.12	c : 0.10	= : 0.10	g : 0.10	d : 0.07	b : 0.07	" : 0.05	3 : 0.03	] : 0.03	i : 0.03	h : 0.03	E : 0.01	2 : 0.01	: : 0.01	a : 0.01	
c : 0.14	e : 0.12	= : 0.12	f : 0.10	g : 0.10	d : 0.08	[ : 0.08	i : 0.05	" : 0.05	: : 0.03	h : 0.03	2 : 0.01	b : 0.01	
c : 0.17	e : 0.12	= : 0.12	d : 0.10	g : 0.10	f : 0.08	i : 0.07	: : 0.03	h : 0.03	[ : 0.03	" : 0.03	a : 0.01	b : 0.01	! : 0.01	
c : 0.14	= : 0.14	e : 0.12	d : 0.10	g : 0.10	f : 0.07	i : 0.07	: : 0.05	h : 0.03	" : 0.03	b : 0.03	[ : 0.03	# : 0.01	! : 0.01	
= : 0.14	[ : 0.12	e : 0.12	i : 0.08	g : 0.08	c : 0.08	d : 0.07	f : 0.07	b : 0.05	h : 0.03	a : 0.01	" : 0.01	: : 0.01	! : 0.01	o : 0.01	# : 0.01	
= : 0.16	g : 0.12	[ : 0.10	e : 0.10	i : 0.08	b : 0.07	c : 0.07	f : 0.05	] : 0.03	h : 0.03	d : 0.03	: : 0.01	" : 0.01	$ : 0.01	! : 0.01	o : 0.01	# : 0.01	
= : 0.19	c : 0.12	g : 0.12	e : 0.10	i : 0.08	" : 0.07	b : 0.05	a : 0.03	f : 0.03	[ : 0.03	d : 0.03	! : 0.03	$ : 0.01	o : 0.01	# : 0.01	
= : 0.21	c : 0.14	[ : 0.12	g : 0.10	i : 0.08	e : 0.08	" : 0.07	! : 0.05	d : 0.03	$ : 0.01	f : 0.01	b : 0.01	o : 0.01	
= : 0.23	c : 0.14	i : 0.08	g : 0.08	" : 0.08	! : 0.08	a : 0.05	[ : 0.05	e : 0.05	f : 0.03	b : 0.01	$ : 0.01	o : 0.01	d : 0.01	
= : 0.26	! : 0.10	c : 0.10	i : 0.08	g : 0.08	[ : 0.05	a : 0.05	d : 0.05	" : 0.03	b : 0.03	f : 0.03	e : 0.03	$ : 0.01	o : 0.01	
= : 0.24	c : 0.16	g : 0.12	i : 0.07	e : 0.07	! : 0.05	d : 0.05	[ : 0.05	# : 0.05	" : 0.03	b : 0.03	f : 0.03	
= : 0.23	[ : 0.12	g : 0.12	c : 0.12	d : 0.08	e : 0.07	b : 0.05	i : 0.05	# : 0.05	! : 0.03	" : 0.01	f : 0.01	
= : 0.19	c : 0.12	b : 0.10	d : 0.10	! : 0.08	a : 0.07	g : 0.07	# : 0.05	e : 0.05	i : 0.03	f : 0.03	% : 0.01	[ : 0.01	" : 0.01	
= : 0.17	[ : 0.14	! : 0.10	# : 0.08	b : 0.08	d : 0.07	g : 0.07	" : 0.05	c : 0.05	f : 0.05	e : 0.05	% : 0.01	i : 0.01	
e : 0.17	= : 0.16	" : 0.08	g : 0.08	d : 0.07	b : 0.07	c : 0.07	[ : 0.07	! : 0.05	f : 0.03	# : 0.03	a : 0.03	% : 0.01	i : 0.01	
= : 0.14	e : 0.14	c : 0.12	[ : 0.12	" : 0.08	g : 0.08	b : 0.07	d : 0.07	f : 0.03	# : 0.03	! : 0.03	% : 0.01	a : 0.01	
c : 0.30	= : 0.14	e : 0.14	g : 0.08	d : 0.07	" : 0.05	[ : 0.05	f : 0.03	# : 0.03	% : 0.01	a : 0.01	! : 0.01	b : 0.01	
c : 0.33	e : 0.14	b : 0.12	= : 0.10	d : 0.07	[ : 0.07	g : 0.05	f : 0.03	" : 0.01	% : 0.01	q : 0.01	
c : 0.30	b : 0.14	e : 0.14	a : 0.10	= : 0.07	[ : 0.05	d : 0.05	o : 0.03	g : 0.03	p : 0.01	q : 0.01	f : 0.01	
o : 0.48	c : 0.16	n : 0.14	b : 0.03	g : 0.03	a : 0.01	d : 0.01	l : 0.01	m : 0.01	p : 0.01	r : 0.01	q : 0.01	= : 0.01	
o : 0.48	n : 0.21	c : 0.08	l : 0.07	m : 0.03	p : 0.01	g : 0.01	r : 0.01	b : 0.01	q : 0.01	= : 0.01	
o : 0.48	n : 0.23	m : 0.12	l : 0.07	c : 0.03	p : 0.01	r : 0.01	q : 0.01	
o : 0.48	n : 0.23	m : 0.14	l : 0.07	c : 0.01	p : 0.01	r : 0.01	q : 0.01	
o : 0.48	n : 0.23	m : 0.12	a : 0.03	c : 0.03	b : 0.01	l : 0.01	p : 0.01	r : 0.01	q : 0.01	
o : 0.44	m : 0.10	n : 0.08	c : 0.07	b : 0.07	d : 0.05	] : 0.03	= : 0.01	e : 0.01	a : 0.01	l : 0.01	p : 0.01	r : 0.01	q : 0.01	
c : 0.35	b : 0.12	e : 0.12	= : 0.08	d : 0.07	a : 0.07	] : 0.05	g : 0.03	r : 0.01	n : 0.01	f : 0.01	m : 0.01	
c : 0.35	b : 0.12	] : 0.12	e : 0.12	= : 0.10	d : 0.07	g : 0.05	r : 0.01	f : 0.01	
c : 0.33	= : 0.12	e : 0.12	b : 0.08	g : 0.08	d : 0.07	] : 0.05	f : 0.03	3 : 0.03	a : 0.01	r : 0.01	
= : 0.17	2 : 0.17	e : 0.14	] : 0.12	3 : 0.08	g : 0.08	b : 0.05	d : 0.03	f : 0.03	c : 0.03	4 : 0.01	a : 0.01	
2 : 0.19	= : 0.17	e : 0.14	3 : 0.10	g : 0.08	] : 0.07	c : 0.05	b : 0.03	d : 0.03	f : 0.03	4 : 0.01	a : 0.01	i : 0.01	
= : 0.17	c : 0.12	g : 0.10	] : 0.08	3 : 0.08	d : 0.07	i : 0.05	a : 0.05	f : 0.05	b : 0.05	e : 0.05	4 : 0.03	2 : 0.03	
= : 0.17	c : 0.17	d : 0.10	g : 0.10	b : 0.08	] : 0.07	i : 0.05	e : 0.05	4 : 0.03	f : 0.03	3 : 0.03	2 : 0.03	a : 0.01	
= : 0.23	c : 0.17	d : 0.08	g : 0.08	] : 0.07	i : 0.05	b : 0.05	3 : 0.05	e : 0.05	f : 0.03	a : 0.03	2 : 0.03	4 : 0.01	
= : 0.24	] : 0.17	c : 0.10	d : 0.08	g : 0.07	i : 0.05	3 : 0.05	4 : 0.05	e : 0.05	2 : 0.03	f : 0.03	b : 0.01	
= : 0.24	c : 0.12	g : 0.08	b : 0.07	i : 0.07	] : 0.05	d : 0.05	3 : 0.05	e : 0.05	2 : 0.03	h : 0.03	4 : 0.03	f : 0.03	a : 0.01	[ : 0.01	
= : 0.21	c : 0.14	g : 0.10	i : 0.08	e : 0.07	] : 0.05	b : 0.05	4 : 0.05	: : 0.03	a : 0.03	h : 0.03	d : 0.03	f : 0.03	3 : 0.01	2 : 0.01	
= : 0.19	c : 0.14	e : 0.12	g : 0.10	] : 0.10	i : 0.08	d : 0.05	4 : 0.05	: : 0.03	h : 0.03	3 : 0.01	b : 0.01	f : 0.01	
e : 0.17	= : 0.17	g : 0.12	c : 0.08	i : 0.08	f : 0.05	2 : 0.05	] : 0.05	3 : 0.03	h : 0.03	b : 0.03	d : 0.03	4 : 0.01	a : 0.01	
e : 0.16	= : 0.16	g : 0.12	2 : 0.10	f : 0.08	i : 0.07	3 : 0.07	c : 0.05	h : 0.03	a : 0.03	4 : 0.03	d : 0.03	b : 0.01	
e : 0.17	] : 0.14	g : 0.10	= : 0.10	f : 0.08	2 : 0.07	3 : 0.07	i : 0.05	c : 0.05	: : 0.03	h : 0.03	C : 0.01	4 : 0.01	d : 0.01	

#score	771.0596143159229
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_CDS_m3_run2.txt

#BEAR
$=================="""fff	chr7:97498360-97498604(-)$1	244	138	163	9.3714
eeiiiiiiiii!!bbccc####ccc	chr20:49307563-49307864(-)$1	301	116	141	9.0771
fffffggggggg[eeeee!!a[a[d	chr6:166755853-166756149(-)$1	296	211	236	8.4176
$$$$ffffffccc[dddd!!ccc!!	chr7:99686488-99686804(+)$1	316	54	79	8.7482
gggg"""cccbb!!dddd[ddddll	chr16:88729360-88729637(-)$1	277	115	140	8.9728
[bb!!ggggggg!!dddd[dddd[a	chr7:54825137-54825389(-)$1	252	107	132	10.3070
b!!ccc[eeeee!!dddd!!fffff	chr2:85769648-85769932(+)$1	284	164	189	9.2045
$$$bb!!ccc[a!!eeeee"""bb!	chr19:39138196-39138519(+)$1	323	82	107	8.2639
dddd[ccc[ccc[==========!!	chr17:79894942-79895209(-)$1	267	81	106	8.2221
"dddd"""a[ccc[dddd[bb[eee	chr1:153930840-153931111(-)$1	271	132	157	9.1580
!=========="""dddd[ffffff	chr19:50180394-50180674(+)$1	280	152	177	11.2649
e]iiiiiiiii:a[ggggggg[bb!	chr15:91537544-91537831(-)$1	287	117	142	7.3108
==========####bbccc!!eeee	chr18:43678037-43678293(-)$1	256	58	83	9.3916
[ccc!!cccccc!!dddd[ccchhh	chr9:134011226-134011455(+)$1	229	31	56	10.1979
eeeee!!adddd!!eeeee!!eeee	chr11:46822726-46822974(-)$1	248	171	196	7.6441
"bb[ggggggg"""==========[	chr16:447202-447481(+)$1	279	108	133	9.4235
dddggggggg[a[ddddbb[dddd"	chrX:77380693-77380954(+)$1	261	141	166	8.1140
#iiiiiiiii[a!!dddd[iiiiii	chr22:19918452-19918722(-)$1	270	99	124	11.7932
==========[bb[dddd"""dddd	chr16:28962291-28962545(+)$1	254	64	89	10.9961
gggggg[ccc[dddddddd[ccc[b	chr17:73839682-73839943(-)$1	261	134	159	8.4549
cc"""ccc[ccc!!ddddmmmmddd	chrX:152957483-152957736(+)$1	253	125	150	7.4420
:ccc[ggggggg!!ddddllldddd	chr11:67810665-67810942(+)$1	277	123	148	7.6497
"""ddddeeeee[dddd!!ccc[cc	chr11:18425139-18425353(+)$1	214	90	115	7.9282
Affffff[ccc"""ccc[a[eeeee	chr2:54197795-54198044(-)$1	249	83	108	6.9017
gggggggdddd"""dddd[eeeeet	chr17:56084378-56084706(-)$1	328	61	86	8.8908
ddd[eeeee[bb!!dddd$$$$$a[	chr1:39753047-39753335(+)$1	288	109	134	8.4301
gggggg[a[ccc!!bb"""gggggg	chr6:26124309-26124566(+)$1	257	13	38	8.4922
####eeeee$$$$$dddda[eeeee	chr1:155904033-155904290(-)$1	257	5	30	8.1390
obb==========[dddd[eeeeec	chr16:75018806-75019087(-)$1	281	127	152	10.1015
eeiiiiiiiii"""dddd"""ffff	chr2:170440775-170441069(+)$1	294	149	174	11.1700
iiii[ggggggg!!dddd[ccc[ii	chr11:5275557-5275828(-)$1	271	43	68	11.3133
[bb[ggggggga[dddd!!cccbbc	chr9:101867328-101867596(+)$1	268	107	132	9.1193
==========!!ffffff[======	chr9:101558621-101558914(-)$1	293	157	182	8.7865
============[eeeee!!eeeee	chr17:27224488-27224741(-)$1	253	137	162	10.0120
!eeeee!!ccc!!adddd[dddd[d	chr1:19490783-19491026(-)$1	243	146	171	9.3044
ciiiiiiiii$$$$$ccc[eeeeel	chr2:98262433-98262715(+)$1	282	149	174	7.8941
ggggggccc[ccc[dddd[bb####	chr19:12845270-12845568(-)$1	298	174	199	9.5134
dd[ccc[ffffff[dddd####ccc	chr12:56435825-56436138(+)$1	313	105	130	9.0031
dddd[ggggggg!!dddd[bb[ddd	chr1:109289227-109289509(+)$1	282	193	218	9.8665
b[dddd"""a[bb[dddd[gggggg	chr17:55333991-55334261(+)$1	270	199	224	8.6537
dddd!!bbdddd!!dddd[adddd%	chr3:195789675-195789922(-)$1	247	49	74	7.8207
iiiiiiiibb[aeeeee[ccc[ccc	chr5:131132508-131132810(-)$1	302	54	79	7.7876
========ccc[a[dddd$$$$$cc	chr16:2587900-2588217(+)$1	317	67	92	10.4906
e[bb[bb[eeeee[dddd!!bb!!c	chr21:47878917-47879215(+)$1	298	193	218	8.3689
hhbb[hhhhhhhh[dddd!!bb[ff	chr3:186501278-186501522(+)$1	244	75	100	7.8827
dddd!!eeeee"""ggggggg[ccc	chr19:6739607-6739900(+)$1	293	34	59	7.6218
[eeeee####bb!!eeeee[a[fff	chr12:56122010-56122239(-)$1	229	106	131	7.7365
c===========[eeeee"""ccc[	chr5:137688338-137688618(+)$1	280	183	208	10.4380
a[bb[a!!a[ccceeeee!!hhhhh	chr15:101835271-101835546(-)$1	275	96	121	7.6116
======ggggggg[dddd!!ccc!!	chr12:56693895-56694180(-)$1	285	154	179	11.4373
hhh####ccc[bb[dddd[cccbb"	chrX:153060016-153060294(+)$1	278	45	70	8.7461
gg####cccccc!!dddd[cccacc	chr1:12089620-12089925(+)$1	305	170	195	10.5231
ebbdddd"""ccc[dddd!!bb[dd	chr4:17812498-17812803(+)$1	305	145	170	8.3412

#otherMatches

#Seq PSSM
GUGUGGCAUUUGGGCGCUGUUUGGC	chr7:97498360-97498604(-)$1	244	138	163	9.3714
AGACGCUUGCUGGCGGCAAUAGGGA	chr20:49307563-49307864(-)$1	301	116	141	9.0771
AGGACGACGAGGAGCAGGGCCUGAC	chr6:166755853-166756149(-)$1	296	211	236	8.4176
AACAUGCGCCGCUCGCCUUACGGAA	chr7:99686488-99686804(+)$1	316	54	79	8.7482
GGCUGUGGAGCUGGGGUCACUGCGC	chr16:88729360-88729637(-)$1	277	115	140	8.9728
CAUGGAUCAGGUAAUGCAGUUUGUU	chr7:54825137-54825389(-)$1	252	107	132	10.3070
UCGUUGGGUGGCAAAAUCCCUUGUU	chr2:85769648-85769932(+)$1	284	164	189	9.2045
agggcgggcugaagcagcugaagcg	chr19:39138196-39138519(+)$1	323	82	107	8.2639
ACCCGCGCACGGUAGCUGGGUUGGG	chr17:79894942-79895209(-)$1	267	81	106	8.2221
AGGAAGAUGGCGACGUCGGGGGCGA	chr1:153930840-153931111(-)$1	271	132	157	9.1580
GCCGAGGCCGCGAACUGCAUCAUGG	chr19:50180394-50180674(+)$1	280	152	177	11.2649
GUUGUUGCUCUCGGGGCCGUGUGGA	chr15:91537544-91537831(-)$1	287	117	142	7.3108
GCGGCUGCAGAAGUACCGCCUGCGG	chr18:43678037-43678293(-)$1	256	58	83	9.3916
UGCAGACCCAGGUUAGCUUAGAACU	chr9:134011226-134011455(+)$1	229	31	56	10.1979
CUUACUGGCCUGGCUGUUGGGCUAA	chr11:46822726-46822974(-)$1	248	171	196	7.6441
CGGGUGAGUggggccgcgcgccccg	chr16:447202-447481(+)$1	279	108	133	9.4235
ACUGCCACUUGCUGUGCCAAAUGGA	chrX:77380693-77380954(+)$1	261	141	166	8.1140
AGCAGGUCAGCGGGACUAUGAUCUC	chr22:19918452-19918722(-)$1	270	99	124	11.7932
GGGCCGCUGGUCCGGAGGUAGCGGU	chr16:28962291-28962545(+)$1	254	64	89	10.9961
GCACCCAUGGACCUCAGCCACGGCG	chr17:73839682-73839943(-)$1	261	134	159	8.4549
CCGGAUGUCUGUGCCAGGCACACCU	chrX:152957483-152957736(+)$1	253	125	150	7.4420
AGGCAGGGCAGGAGGUUGGAGCAGC	chr11:67810665-67810942(+)$1	277	123	148	7.6497
AUUUCUUUUAGUGCCUGUAUGGAGU	chr11:18425139-18425353(+)$1	214	90	115	7.9282
gguucgggugggagggggugggggg	chr2:54197795-54198044(-)$1	249	83	108	6.9017
GUCUCCCCCCCAUAUCCGUGCGCCG	chr17:56084378-56084706(-)$1	328	61	86	8.8908
GUGGCCAUCAGCUCCUCUGAAGAUG	chr1:39753047-39753335(+)$1	288	109	134	8.4301
UGCUACCGACCAAUCAAAAAGUCGG	chr6:26124309-26124566(+)$1	257	13	38	8.4922
AUUUUCACCGGAACCGCUCGGCCCC	chr1:155904033-155904290(-)$1	257	5	30	8.1390
GGUGGGAGGGCGCCGUCCUggggcc	chr16:75018806-75019087(-)$1	281	127	152	10.1015
GCCUUUUCUGGCGGCGGUAGAUUUG	chr2:170440775-170441069(+)$1	294	149	174	11.1700
GGCACCUUCUGACUGUCAAACUGUU	chr11:5275557-5275828(-)$1	271	43	68	11.3133
aggcagcggcgcggccgggccgggc	chr9:101867328-101867596(+)$1	268	107	132	9.1193
UGCCCCCGGCCUUCCAGCUGCUGCU	chr9:101558621-101558914(-)$1	293	157	182	8.7865
GCCGCCGGCGCCAUGGGCAAUUGCC	chr17:27224488-27224741(-)$1	253	137	162	10.0120
ACAGAGAUGCUGGCCAACGGUGAUG	chr1:19490783-19491026(-)$1	243	146	171	9.3044
CUGGCCGCGCAGGCCCUGAGGGCUC	chr2:98262433-98262715(+)$1	282	149	174	7.8941
ccguugggcugagucgggaucgggg	chr19:12845270-12845568(-)$1	298	174	199	9.5134
CUCCGGUCCGUGCCUCCAAGAUGGU	chr12:56435825-56436138(+)$1	313	105	130	9.0031
GGGUAGGGGUUGAGAGAGGGAAGGC	chr1:109289227-109289509(+)$1	282	193	218	9.8665
CGCCGCCUUGGGCUCGCUCUCCUUG	chr17:55333991-55334261(+)$1	270	199	224	8.6537
UACCUUCCAUCCUUGUCUGUGUAUA	chr3:195789675-195789922(-)$1	247	49	74	7.8207
gccccgccccgcgcgccgUGGCCGU	chr5:131132508-131132810(-)$1	302	54	79	7.7876
gcgccgggggcggggggcggcgggc	chr16:2587900-2588217(+)$1	317	67	92	10.4906
GAGCUGGAGCUGGAGCUGUCGGAAG	chr21:47878917-47879215(+)$1	298	193	218	8.3689
GGGCGCCGCUGUCUUUUCAGUCGGG	chr3:186501278-186501522(+)$1	244	75	100	7.8827
gggcggggccgggcggggcggggcg	chr19:6739607-6739900(+)$1	293	34	59	7.6218
CGGCAGCCAUGGCGGUGGAAGGAGG	chr12:56122010-56122239(-)$1	229	106	131	7.7365
ugcugcugcuguucgcggacacugc	chr5:137688338-137688618(+)$1	280	183	208	10.4380
CGCUGGGACGUCUCGCUGGCGGGAG	chr15:101835271-101835546(-)$1	275	96	121	7.6116
CCCUUUCUUACCUCCCCACCAGAUC	chr12:56693895-56694180(-)$1	285	154	179	11.4373
CCACUUACGCGUCGCUCUUCCUCGU	chrX:153060016-153060294(+)$1	278	45	70	8.7461
GGAGAGCUGUGGCUUCUCAUGGGCC	chr1:12089620-12089925(+)$1	305	170	195	10.5231
GGCUGGCAGGCUGUAGCCGAGCGCG	chr4:17812498-17812803(+)$1	305	145	170	8.3412

#DB
.((((((((((((((((((...(((	chr7:97498360-97498604(-)$1	1	138	163	9.3714
(((((((((((..(((((....(((	chr20:49307563-49307864(-)$1	1	116	141	9.0771
)))))(((((((.(((((..(.(.(	chr6:166755853-166756149(-)$1	1	211	236	8.4176
....(((((((((.((((..(((..	chr7:99686488-99686804(+)$1	1	54	79	8.7482
((((...(((((..((((.((((..	chr16:88729360-88729637(-)$1	1	115	140	8.9728
.((..(((((((..((((.((((.(	chr7:54825137-54825389(-)$1	1	107	132	10.3070
(..(((.(((((..((((..(((((	chr2:85769648-85769932(+)$1	1	164	189	9.2045
...((..(((.(..(((((...((.	chr19:39138196-39138519(+)$1	1	82	107	8.2639
((((.(((.(((.((((((((((..	chr17:79894942-79895209(-)$1	1	81	106	8.2221
.((((...(.(((.((((.((.(((	chr1:153930840-153931111(-)$1	1	132	157	9.1580
.((((((((((...((((.((((((	chr19:50180394-50180674(+)$1	1	152	177	11.2649
).))))))))).(.(((((((.((.	chr15:91537544-91537831(-)$1	1	117	142	7.3108
((((((((((....(((((..((((	chr18:43678037-43678293(-)$1	1	58	83	9.3916
.(((..((((((..((((.((((((	chr9:134011226-134011455(+)$1	1	31	56	10.1979
(((((..(((((..(((((..((((	chr11:46822726-46822974(-)$1	1	171	196	7.6441
.((.(((((((...((((((((((.	chr16:447202-447481(+)$1	1	108	133	9.4235
)))(((((((.(.((((((.((((.	chrX:77380693-77380954(+)$1	1	141	166	8.1140
.(((((((((.(..((((.((((((	chr22:19918452-19918722(-)$1	1	99	124	11.7932
((((((((((.((.((((...((((	chr16:28962291-28962545(+)$1	1	64	89	10.9961
((((((.(((.((((((((.(((.(	chr17:73839682-73839943(-)$1	1	134	159	8.4549
((...(((.(((..((((....)))	chrX:152957483-152957736(+)$1	1	125	150	7.4420
.(((.(((((((..((((...))))	chr11:67810665-67810942(+)$1	1	123	148	7.6497
...(((((((((.((((..(((.((	chr11:18425139-18425353(+)$1	1	90	115	7.9282
(((((((.(((...(((.(.(((((	chr2:54197795-54198044(-)$1	1	83	108	6.9017
(((((((((((...((((.(((((.	chr17:56084378-56084706(-)$1	1	61	86	8.8908
(((.(((((.((..((((.....(.	chr1:39753047-39753335(+)$1	1	109	134	8.4301
((((((.(.(((..((...((((((	chr6:26124309-26124566(+)$1	1	13	38	8.4922
....(((((.....(((((.(((((	chr1:155904033-155904290(-)$1	1	5	30	8.1390
.))((((((((((.((((.((((((	chr16:75018806-75019087(-)$1	1	127	152	10.1015
))(((((((((...((((...((((	chr2:170440775-170441069(+)$1	1	149	174	11.1700
((((.(((((((..((((.(((.((	chr11:5275557-5275828(-)$1	1	43	68	11.3133
.((.((((((((.((((..((((((	chr9:101867328-101867596(+)$1	1	107	132	9.1193
((((((((((..((((((.((((((	chr9:101558621-101558914(-)$1	1	157	182	8.7865
((((((((((((.(((((..(((((	chr17:27224488-27224741(-)$1	1	137	162	10.0120
.(((((..(((..(((((.((((.(	chr1:19490783-19491026(-)$1	1	146	171	9.3044
((((((((((.....(((.(((((.	chr2:98262433-98262715(+)$1	1	149	174	7.8941
(((((((((.(((.((((.((....	chr19:12845270-12845568(-)$1	1	174	199	9.5134
((.(((.((((((.((((....(((	chr12:56435825-56436138(+)$1	1	105	130	9.0031
((((.(((((((..((((.((.(((	chr1:109289227-109289509(+)$1	1	193	218	9.8665
(.((((...(.((.((((.((((((	chr17:55333991-55334261(+)$1	1	199	224	8.6537
((((..((((((..((((.(((((.	chr3:195789675-195789922(-)$1	1	49	74	7.8207
((((((((((.((((((.(((.(((	chr5:131132508-131132810(-)$1	1	54	79	7.7876
))))))))(((.(.((((.....((	chr16:2587900-2588217(+)$1	1	67	92	10.4906
(.((.((.(((((.((((..((..(	chr21:47878917-47879215(+)$1	1	193	218	8.3689
))((.((((((((.((((..((.((	chr3:186501278-186501522(+)$1	1	75	100	7.8827
((((..(((((...(((((((.(((	chr19:6739607-6739900(+)$1	1	34	59	7.6218
.(((((....((..(((((.(.(((	chr12:56122010-56122239(-)$1	1	106	131	7.7365
((((((((((((.(((((...(((.	chr5:137688338-137688618(+)$1	1	183	208	10.4380
(.((.(..(.((((((((..(((((	chr15:101835271-101835546(-)$1	1	96	121	7.6116
(((((((((((((.((((..(((..	chr12:56693895-56694180(-)$1	1	154	179	11.4373
(((....(((.((.((((.(((((.	chrX:153060016-153060294(+)$1	1	45	70	8.7461
((....((((((..((((.((((((	chr1:12089620-12089925(+)$1	1	170	195	10.5231
)))((((...(((.((((..((.((	chr4:17812498-17812803(+)$1	1	145	170	8.3412

#PSSM
d : 0.13	e : 0.11	g : 0.11	= : 0.11	[ : 0.07	$ : 0.05	" : 0.05	c : 0.05	b : 0.03	! : 0.03	# : 0.03	i : 0.03	h : 0.03	f : 0.01	: : 0.01	A : 0.01	o : 0.01	a : 0.01	
= : 0.16	d : 0.15	g : 0.11	e : 0.09	b : 0.09	i : 0.07	c : 0.05	[ : 0.05	f : 0.03	$ : 0.03	h : 0.03	! : 0.01	] : 0.01	" : 0.01	# : 0.01	
= : 0.16	b : 0.15	d : 0.15	i : 0.13	g : 0.09	e : 0.05	f : 0.03	$ : 0.03	c : 0.03	" : 0.03	# : 0.03	! : 0.01	[ : 0.01	h : 0.01	
= : 0.18	d : 0.15	i : 0.13	g : 0.11	c : 0.07	b : 0.07	e : 0.05	[ : 0.05	# : 0.05	f : 0.03	$ : 0.01	! : 0.01	" : 0.01	
= : 0.18	[ : 0.13	g : 0.13	i : 0.11	e : 0.09	! : 0.07	d : 0.07	f : 0.05	" : 0.03	c : 0.03	# : 0.03	b : 0.01	
g : 0.22	= : 0.18	i : 0.11	! : 0.09	c : 0.07	e : 0.07	d : 0.05	f : 0.03	" : 0.03	# : 0.03	b : 0.01	h : 0.01	a : 0.01	
g : 0.18	= : 0.16	i : 0.11	c : 0.09	[ : 0.07	! : 0.07	" : 0.05	e : 0.05	f : 0.03	d : 0.03	b : 0.03	# : 0.03	h : 0.01	
= : 0.16	g : 0.16	c : 0.16	i : 0.11	e : 0.09	" : 0.05	f : 0.03	a : 0.03	[ : 0.03	! : 0.03	d : 0.01	b : 0.01	h : 0.01	# : 0.01	
c : 0.18	g : 0.16	= : 0.15	e : 0.11	i : 0.09	[ : 0.05	d : 0.05	f : 0.03	a : 0.03	" : 0.03	b : 0.01	h : 0.01	# : 0.01	
c : 0.22	g : 0.16	= : 0.15	i : 0.09	e : 0.07	[ : 0.07	d : 0.05	f : 0.03	$ : 0.01	a : 0.01	b : 0.01	h : 0.01	# : 0.01	" : 0.01	
c : 0.24	g : 0.15	[ : 0.15	= : 0.09	e : 0.07	i : 0.05	b : 0.05	d : 0.05	$ : 0.03	# : 0.01	! : 0.01	f : 0.01	h : 0.01	
c : 0.18	g : 0.11	b : 0.11	" : 0.11	a : 0.09	= : 0.07	! : 0.05	e : 0.05	d : 0.05	$ : 0.03	: : 0.01	# : 0.01	f : 0.01	[ : 0.01	h : 0.01	
! : 0.33	[ : 0.13	" : 0.11	c : 0.09	b : 0.05	= : 0.03	a : 0.03	$ : 0.03	f : 0.03	e : 0.03	# : 0.01	d : 0.01	h : 0.01	g : 0.01	
! : 0.30	[ : 0.26	" : 0.11	e : 0.09	d : 0.07	= : 0.03	$ : 0.03	b : 0.01	# : 0.01	f : 0.01	a : 0.01	
d : 0.64	e : 0.15	= : 0.05	b : 0.05	g : 0.03	c : 0.01	f : 0.01	$ : 0.01	
d : 0.64	e : 0.15	= : 0.05	c : 0.05	g : 0.03	b : 0.03	f : 0.01	
d : 0.64	e : 0.15	c : 0.07	= : 0.05	g : 0.03	" : 0.01	f : 0.01	
d : 0.58	e : 0.13	= : 0.05	c : 0.05	g : 0.03	! : 0.03	[ : 0.03	b : 0.01	" : 0.01	f : 0.01	
[ : 0.33	! : 0.20	" : 0.07	= : 0.05	e : 0.05	# : 0.03	g : 0.03	c : 0.03	a : 0.03	$ : 0.03	b : 0.01	d : 0.01	m : 0.01	l : 0.01	
! : 0.20	c : 0.13	" : 0.09	[ : 0.09	g : 0.07	d : 0.05	= : 0.05	b : 0.05	e : 0.05	# : 0.03	$ : 0.03	f : 0.01	i : 0.01	m : 0.01	l : 0.01	a : 0.01	
c : 0.18	b : 0.11	e : 0.11	" : 0.09	d : 0.09	g : 0.07	= : 0.05	# : 0.03	a : 0.03	f : 0.03	! : 0.03	$ : 0.03	i : 0.01	m : 0.01	l : 0.01	h : 0.01	
c : 0.18	e : 0.15	[ : 0.13	d : 0.13	# : 0.05	f : 0.05	= : 0.05	b : 0.05	" : 0.03	$ : 0.03	g : 0.03	i : 0.01	m : 0.01	h : 0.01	
d : 0.16	e : 0.16	c : 0.15	f : 0.09	b : 0.07	[ : 0.07	= : 0.05	a : 0.03	h : 0.03	$ : 0.03	g : 0.03	i : 0.01	# : 0.01	! : 0.01	
e : 0.16	c : 0.15	d : 0.13	f : 0.11	[ : 0.07	! : 0.07	b : 0.07	h : 0.03	= : 0.03	i : 0.03	g : 0.03	l : 0.01	a : 0.01	# : 0.01	
c : 0.18	d : 0.13	f : 0.11	e : 0.11	! : 0.09	[ : 0.05	l : 0.03	h : 0.03	" : 0.03	i : 0.03	g : 0.03	a : 0.01	b : 0.01	t : 0.01	= : 0.01	# : 0.01	% : 0.01	

#score	477.7534158282394
#seq	53
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_UTR_m3_run2.txt

#BEAR
eeeee!!ddddnnnnndddd4444ee	chr6:43738589-43738875(+)$1	286	223	249	10.3028
hhhhhhh[cccooooooccchhhhhh	chr7:148581163-148581450(-)$1	287	54	80	10.6331
hbb!!ddddbboooooobb]dddd44	chr3:182631573-182631879(+)$1	306	142	168	10.5339
=======[cccooooooccc]=====	chr6:28120738-28121104(+)$1	366	86	112	13.6234
ddiiiiiiiiiooooooiiiiiiiii	chr5:176980146-176980451(-)$1	305	86	112	11.9947
gg[a[bb[ddddnnnnndddd]bba]	chr1:114447183-114447521(-)$1	338	141	167	10.6872
iiiiiiiiiddddllldddd]iiiii	chr3:156869414-156869691(-)$1	277	216	242	9.8948
bb!!bb[ddddoooooodddd]bb22	chr19:5661643-5661923(+)$1	280	138	164	13.4784
bb[ccc[ddddoooooodddd]ccc]	chr19:36719579-36719804(+)$1	225	28	54	14.3241
[dddd####bboooooobb333dddd	chr11:66391691-66391987(+)$1	296	47	73	11.1400
cc:ccc[ddddooooooddddccc::	chr7:100076576-100076881(-)$1	305	150	176	10.8478
hhhh"""ddddoooooodddd333hh	chr17:79803702-79803935(-)$1	233	147	173	13.8691
ggggggg[ddddmmmmdddd22gggg	chr19:38894148-38894439(+)$1	291	79	105	9.4396
gg!!bb[bb[aooooooa]bb]bb22	chr6:31726226-31726474(+)$1	248	149	175	10.6082
d"""gggggggoooooogggggggdd	chr22:22336990-22337275(-)$1	285	250	276	11.2565
!ccc[bb[ddddnnnnndddd]bbcc	chr14:21979209-21979471(-)$1	262	209	235	10.4015
:cccccc!!bboooooobb22ccc]c	chr16:67863589-67863898(-)$1	309	15	41	10.2639
fffff!!ddddnnnnndddd22ffff	chr7:99697114-99697333(-)$1	219	30	56	10.2796
cccccc[ddddnnnnndddd]ccc]c	chr2:232327814-232328108(-)$1	294	186	212	10.7431
ccc[ccc"""ddddllldddd]cccc	chr19:7711944-7712206(+)$1	262	189	215	9.1760
fff[a[a[cccooooooccca]afff	chr1:235530672-235530919(+)$1	247	193	219	12.8369
cccccc!!ddddllldddd333ccc]	chr19:7711064-7711338(+)$1	274	139	165	10.3581
eeee!!eeeeeooooooeeeee22ee	chr8:124361497-124361769(-)$1	272	187	213	10.6339
bb[bb[eeeeeooooooeeeee]bb]	chr7:116502509-116502845(+)$1	336	49	75	10.5989
c!!ddddddddoooooodddd]dddd	chr19:49610779-49611064(+)$1	285	142	168	13.1115
dddddd"""bboooooobb4444ddd	chr1:179198556-179198828(-)$1	272	192	218	10.7429
iiiiiiiddddoooooodddd]iiii	chr5:86564625-86564903(+)$1	278	241	267	14.5905
fffff!!ddddnnnnndddd22ffff	chr3:196214216-196214494(-)$1	278	237	263	10.2796
ccccc"""cccooooooccc333ccc	chr20:3893129-3893386(+)$1	257	224	250	13.6509
bb!!cccddddoooooodddd]ccc2	chr16:89865464-89865739(-)$1	275	138	164	13.9434
fffff!!ddddnnnnndddd4444ff	chr7:139083239-139083513(+)$1	274	93	119	10.5385
fff"""eeeeeooooooeeeeeffff	chr15:42132878-42133154(+)$1	276	146	172	11.3274
fffff[eeeeeooooooeeeeeffff	chr1:205687269-205687545(-)$1	276	142	168	10.8200
c!!dddd[ddddnnnnndddd]dddd	chr12:123463556-123463858(+)$1	302	116	142	10.0995
ggg####ddddooooooddddggggg	chr19:55649303-55649543(-)$1	240	69	95	14.3056
fff[bb[ddddooooooddddbb]ff	chr16:89383264-89383585(-)$1	321	78	104	12.8752
======!!a[aooooooa]a22====	chr8:145652189-145652444(-)$1	255	135	161	13.0652
!!eeeeeddddoooooodddd]eeee	chr1:113161513-113161838(-)$1	325	114	140	12.8560
dd"""bb[cccooooooccc]bbddd	chr20:57226243-57226508(+)$1	265	195	221	11.4398
hhhhhhhhcccooooooccc]hhhhh	chr1:204485456-204485760(+)$1	304	21	47	10.5819
ggggg!!ddddooooooddddggggg	chr17:61919894-61920355(-)$1	461	30	56	14.3983
[eeeee!!ddddnnnnndddd22eee	chr15:63340673-63341000(+)$1	327	258	284	10.0027
dd####a[ddddnnnnndddda4444	chr12:123001661-123001947(-)$1	286	162	188	10.5195
ggggggg[cccooooooccc]ggggg	chr8:26151076-26151372(+)$1	296	196	222	12.9428
bb"""ccc[bboooooobbccc333b	chr11:118919349-118919605(-)$1	256	73	99	10.9282
iiiiii!!cccooooooccciiiiii	chr16:67202842-67203121(+)$1	279	191	217	13.4805
ffff"""ddddooooooddddfffff	chr17:43024879-43025159(-)$1	280	217	243	13.4135
ggggg[bb[cccooooooccc]bb22	chr8:117861123-117861340(-)$1	217	156	182	10.4806
[bbdddd!!bboooooobb333dddd	chr4:83812133-83812387(-)$1	254	102	128	10.6654
ff!!bb[ddddoooooodddd]bb33	chr19:5707616-5707885(-)$1	269	17	43	14.1137
d[dddd[ddddoooooodddddddd]	chrX:154002976-154003253(+)$1	277	46	72	12.7213
===========oooooo=========	chr9:131456819-131457043(+)$1	224	88	114	12.9086

#otherMatches

#Seq PSSM
GCGGUGUGCGCAGACAGUGCUCCAGC	chr6:43738589-43738875(+)$1	286	223	249	10.3028
AUUGGGCUGCCGCGUUUGGCGCUCGG	chr7:148581163-148581450(-)$1	287	54	80	10.6331
CGUGUGCAUCUGUUGGAAGAAUGCUG	chr3:182631573-182631879(+)$1	306	142	168	10.5339
UUAUUUCAGGUGGUGAGACCAGGAGU	chr6:28120738-28121104(+)$1	366	86	112	13.6234
CUGAGCCUGCCCAGGAAGGCAGGCUC	chr5:176980146-176980451(-)$1	305	86	112	11.9947
ACCGUGGGAGCUGUGGGAGCUGCCCU	chr1:114447183-114447521(-)$1	338	141	167	10.6872
CUAUCAAAAUGAAUAGUUCAUUUUUG	chr3:156869414-156869691(-)$1	277	216	242	9.8948
CGGCGGCCCGCGGUGCGGCGGCCCUA	chr19:5661643-5661923(+)$1	280	138	164	13.4784
ACCCAGCAUUAACAUUGUAAUACUGU	chr19:36719579-36719804(+)$1	225	28	54	14.3241
AGCUCAACGGCAAAGAAGUGAAGGGC	chr11:66391691-66391987(+)$1	296	47	73	11.1400
CCACUCGCUGGCUGCCACCGGGAGCA	chr7:100076576-100076881(-)$1	305	150	176	10.8478
ACGUGGCUUUUGAUGAGAAAAAAAAC	chr17:79803702-79803935(-)$1	233	147	173	13.8691
GCAGCUCGGCAGCCUGCUGCGGGAGC	chr19:38894148-38894439(+)$1	291	79	105	9.4396
AUAGAUCCUGAAAUUGAUGAGAGUGA	chr6:31726226-31726474(+)$1	248	149	175	10.6082
GCGAGCUCGGGAGAGCGCCCGGGCCG	chr22:22336990-22337275(-)$1	285	250	276	11.2565
AGGCACUGGGCUGUUGGGGCCGAGGC	chr14:21979209-21979471(-)$1	262	209	235	10.4015
AGCCCUUACACGAUGGAGUUGAAGAG	chr16:67863589-67863898(-)$1	309	15	41	10.2639
UGGUGGACUCAAUUUGUGAGAAUGCC	chr7:99697114-99697333(-)$1	219	30	56	10.2796
AGUGGAGAAGAGGUAAUUUUAUCCAA	chr2:232327814-232328108(-)$1	294	186	212	10.7431
GUGAggccccggggccgcccccgccc	chr19:7711944-7712206(+)$1	262	189	215	9.1760
CGGUGCGUCACCCUGCAGUGCUCUUG	chr1:235530672-235530919(+)$1	247	193	219	12.8369
ACCCCGGUCAUCAAGGAUGUAAUGGA	chr19:7711064-7711338(+)$1	274	139	165	10.3581
UUUACGAAGGCCUGGUCGCUUUGAUA	chr8:124361497-124361769(-)$1	272	187	213	10.6339
CGGGCCCCUCCCUUAGCGGGGGCGCG	chr7:116502509-116502845(+)$1	336	49	75	10.5989
GAACAUCCGGCAUUCAGGCCGCGAUG	chr19:49610779-49611064(+)$1	285	142	168	13.1115
GGGCUGGGAGGGAGAGACCGGAGCAG	chr1:179198556-179198828(-)$1	272	192	218	10.7429
GAAGGGGUAAAUCAUACUUUGUCCUU	chr5:86564625-86564903(+)$1	278	241	267	14.5905
AGGGAACGCUAAGGUAUGGUCAUCCC	chr3:196214216-196214494(-)$1	278	237	263	10.2796
uuugagaggccgagaugggcagauca	chr20:3893129-3893386(+)$1	257	224	250	13.6509
CCUCCACUCACAAGAUCGUGAGGUGC	chr16:89865464-89865739(-)$1	275	138	164	13.9434
UUUCCCUUCCAGAGAAUGGAUCUUGG	chr7:139083239-139083513(+)$1	274	93	119	10.5385
UGUGUUGUCAGUACUGUUUGAUGCGG	chr15:42132878-42133154(+)$1	276	146	172	11.3274
GAUGAUGGUCUGGGGAGAGAUUUUAU	chr1:205687269-205687545(-)$1	276	142	168	10.8200
UGGGCCAGGGUGUCCUCCACCGUGGC	chr12:123463556-123463858(+)$1	302	116	142	10.0995
AGUCCAUGAGGUUAACCCCUUACUUC	chr19:55649303-55649543(-)$1	240	69	95	14.3056
UGUGUGUCUUCUCUUUUGAAGCAGAC	chr16:89383264-89383585(-)$1	321	78	104	12.8752
CCACGCCGGGCAUAGGAGGUGAGUGU	chr8:145652189-145652444(-)$1	255	135	161	13.0652
UGGCGGCGUGGGUGAAGCCGCAGCUG	chr1:113161513-113161838(-)$1	325	114	140	12.8560
CCAGGCCGUCCAGGAAAGGAAGGGGU	chr20:57226243-57226508(+)$1	265	195	221	11.4398
GGCCUCACCGGAAGCCCUCGUGUGAG	chr1:204485456-204485760(+)$1	304	21	47	10.5819
CGCCUCUGGGUAACUCGACUCGGGCG	chr17:61919894-61920355(-)$1	461	30	56	14.3983
AGCCCCCAGAGGCGCAUCCUCCCGGG	chr15:63340673-63341000(+)$1	327	258	284	10.0027
GAGUAGGAGUCGGUAGGUGACCAUCA	chr12:123001661-123001947(-)$1	286	162	188	10.5195
UGCAAAAUUUGGAUAUAUAAUUUUUG	chr8:26151076-26151372(+)$1	296	196	222	12.9428
CAGAAGCCCGCCAGGAAGCGGCGAAU	chr11:118919349-118919605(-)$1	256	73	99	10.9282
CAGGGGUGGCUGAGUCAAGCCCUCUG	chr16:67202842-67203121(+)$1	279	191	217	13.4805
CGGACGCGCAGACCCAGCUGCUCCGG	chr17:43024879-43025159(-)$1	280	217	243	13.4135
GUAUUGCCGCUGUUGUCUCAGAGGAA	chr8:117861123-117861340(-)$1	217	156	182	10.4806
AGCGCUGCACUAACGCAGGAUCCGGC	chr4:83812133-83812387(-)$1	254	102	128	10.6654
GGCCACCGAGGCAGCUCCCUUUGUCC	chr19:5707616-5707885(-)$1	269	17	43	14.1137
ACACUUGCUGCCUUGAUGCAGGAGUA	chrX:154002976-154003253(+)$1	277	46	72	12.7213
UUUUUCUUUCAGGAGGAUGAAGGAGA	chr9:131456819-131457043(+)$1	224	88	114	12.9086

#DB
(((((..((((.....))))....))	chr6:43738589-43738875(+)$1	1	223	249	10.3028
(((((((.(((......)))))))))	chr7:148581163-148581450(-)$1	1	54	80	10.6331
)((..((((((......)).))))..	chr3:182631573-182631879(+)$1	1	142	168	10.5339
(((((((.(((......))).)))))	chr6:28120738-28121104(+)$1	1	86	112	13.6234
))(((((((((......)))))))))	chr5:176980146-176980451(-)$1	1	86	112	11.9947
((.(.((.((((.....)))).))).	chr1:114447183-114447521(-)$1	1	141	167	10.6872
(((((((((((((...)))).)))))	chr3:156869414-156869691(-)$1	1	216	242	9.8948
((..((.((((......)))).))..	chr19:5661643-5661923(+)$1	1	138	164	13.4784
((.(((.((((......)))).))).	chr19:36719579-36719804(+)$1	1	28	54	14.3241
.((((....((......))...))))	chr11:66391691-66391987(+)$1	1	47	73	11.1400
)).(((.((((......)))))))..	chr7:100076576-100076881(-)$1	1	150	176	10.8478
((((...((((......))))...))	chr17:79803702-79803935(-)$1	1	147	173	13.8691
(((((((.((((....))))..))))	chr19:38894148-38894439(+)$1	1	79	105	9.4396
((..((.((.(......).)).))..	chr6:31726226-31726474(+)$1	1	149	175	10.6082
(...(((((((......)))))))))	chr22:22336990-22337275(-)$1	1	250	276	11.2565
.(((.((.((((.....)))).))))	chr14:21979209-21979471(-)$1	1	209	235	10.4015
.((((((..((......))..))).)	chr16:67863589-67863898(-)$1	1	15	41	10.2639
(((((..((((.....))))..))))	chr7:99697114-99697333(-)$1	1	30	56	10.2796
((((((.((((.....)))).))).)	chr2:232327814-232328108(-)$1	1	186	212	10.7431
(((.(((...((((...)))).))))	chr19:7711944-7712206(+)$1	1	189	215	9.1760
(((.(.(.(((......)))).))))	chr1:235530672-235530919(+)$1	1	193	219	12.8369
((((((..((((...))))...))).	chr19:7711064-7711338(+)$1	1	139	165	10.3581
((((..(((((......)))))..))	chr8:124361497-124361769(-)$1	1	187	213	10.6339
((.((.(((((......))))).)).	chr7:116502509-116502845(+)$1	1	49	75	10.5989
(..((((((((......)))).))))	chr19:49610779-49611064(+)$1	1	142	168	13.1115
((((((...((......))....)))	chr1:179198556-179198828(-)$1	1	192	218	10.7429
(((((((((((......)))).))))	chr5:86564625-86564903(+)$1	1	241	267	14.5905
(((((..((((.....))))..))))	chr3:196214216-196214494(-)$1	1	237	263	10.2796
(((((...(((......)))...)))	chr20:3893129-3893386(+)$1	1	224	250	13.6509
((..(((((((......)))).))).	chr16:89865464-89865739(-)$1	1	138	164	13.9434
(((((..((((.....))))....))	chr7:139083239-139083513(+)$1	1	93	119	10.5385
(((...(((((......)))))))))	chr15:42132878-42133154(+)$1	1	146	172	11.3274
(((((.(((((......)))))))))	chr1:205687269-205687545(-)$1	1	142	168	10.8200
(..((((.((((.....)))).))))	chr12:123463556-123463858(+)$1	1	116	142	10.0995
(((....((((......)))))))))	chr19:55649303-55649543(-)$1	1	69	95	14.3056
(((.((.((((......)))))).))	chr16:89383264-89383585(-)$1	1	78	104	12.8752
((((((..(.(......).)..))))	chr8:145652189-145652444(-)$1	1	135	161	13.0652
..(((((((((......)))).))))	chr1:113161513-113161838(-)$1	1	114	140	12.8560
((...((.(((......))).)))))	chr20:57226243-57226508(+)$1	1	195	221	11.4398
(((((((((((......))).)))))	chr1:204485456-204485760(+)$1	1	21	47	10.5819
(((((..((((......)))))))))	chr17:61919894-61920355(-)$1	1	30	56	14.3983
.(((((..((((.....))))..)))	chr15:63340673-63341000(+)$1	1	258	284	10.0027
((....(.((((.....)))))....	chr12:123001661-123001947(-)$1	1	162	188	10.5195
(((((((.(((......))).)))))	chr8:26151076-26151372(+)$1	1	196	222	12.9428
((...(((.((......)))))...)	chr11:118919349-118919605(-)$1	1	73	99	10.9282
((((((..(((......)))))))))	chr16:67202842-67203121(+)$1	1	191	217	13.4805
((((...((((......)))))))))	chr17:43024879-43025159(-)$1	1	217	243	13.4135
(((((.((.(((......))).))..	chr8:117861123-117861340(-)$1	1	156	182	10.4806
.((((((..((......))...))))	chr4:83812133-83812387(-)$1	1	102	128	10.6654
((..((.((((......)))).))..	chr19:5707616-5707885(-)$1	1	17	43	14.1137
(.((((.((((......)))))))).	chrX:154002976-154003253(+)$1	1	46	72	12.7213
(((((((((((......)))))))))	chr9:131456819-131457043(+)$1	1	88	114	12.9086

#PSSM
f : 0.17	g : 0.13	c : 0.13	d : 0.11	b : 0.09	h : 0.07	= : 0.05	i : 0.05	[ : 0.05	e : 0.03	! : 0.03	: : 0.01	
f : 0.17	b : 0.13	g : 0.13	c : 0.13	d : 0.09	e : 0.05	h : 0.05	= : 0.05	i : 0.05	! : 0.05	" : 0.01	[ : 0.01	
f : 0.15	! : 0.11	c : 0.11	g : 0.09	e : 0.07	i : 0.07	h : 0.05	= : 0.05	[ : 0.05	d : 0.05	" : 0.05	b : 0.03	: : 0.01	# : 0.01	
c : 0.13	d : 0.11	! : 0.09	f : 0.09	e : 0.07	i : 0.07	g : 0.07	" : 0.07	h : 0.05	= : 0.05	[ : 0.05	# : 0.03	a : 0.01	b : 0.01	
c : 0.15	d : 0.11	b : 0.09	" : 0.09	g : 0.09	i : 0.07	f : 0.07	e : 0.05	= : 0.05	h : 0.03	! : 0.03	[ : 0.03	# : 0.03	a : 0.01	
c : 0.15	b : 0.13	! : 0.11	d : 0.11	i : 0.07	" : 0.07	[ : 0.07	= : 0.05	# : 0.05	g : 0.05	h : 0.03	e : 0.03	
! : 0.17	[ : 0.15	e : 0.09	d : 0.07	b : 0.07	" : 0.07	c : 0.07	i : 0.05	g : 0.05	h : 0.03	= : 0.03	# : 0.03	a : 0.03	
d : 0.38	[ : 0.19	! : 0.11	e : 0.07	" : 0.05	i : 0.03	b : 0.03	# : 0.01	g : 0.01	h : 0.01	c : 0.01	= : 0.01	
d : 0.51	c : 0.15	e : 0.07	i : 0.03	! : 0.03	" : 0.03	[ : 0.03	# : 0.01	b : 0.01	g : 0.01	a : 0.01	= : 0.01	
d : 0.51	c : 0.17	b : 0.11	e : 0.07	[ : 0.03	i : 0.01	g : 0.01	" : 0.01	= : 0.01	
d : 0.53	c : 0.17	b : 0.11	e : 0.07	a : 0.03	i : 0.01	g : 0.01	= : 0.01	
o : 0.71	d : 0.17	n : 0.09	c : 0.01	
o : 0.73	n : 0.19	d : 0.03	m : 0.01	l : 0.01	
o : 0.73	n : 0.19	l : 0.03	m : 0.01	d : 0.01	
o : 0.73	n : 0.19	l : 0.05	m : 0.01	
o : 0.73	n : 0.19	l : 0.03	m : 0.01	d : 0.01	
o : 0.73	d : 0.15	n : 0.09	l : 0.01	
d : 0.53	c : 0.15	b : 0.11	e : 0.07	a : 0.03	i : 0.01	g : 0.01	o : 0.01	= : 0.01	
d : 0.53	c : 0.17	b : 0.11	e : 0.07	] : 0.03	i : 0.01	g : 0.01	= : 0.01	
d : 0.51	c : 0.19	e : 0.07	3 : 0.05	] : 0.01	i : 0.01	b : 0.01	g : 0.01	2 : 0.01	4 : 0.01	a : 0.01	= : 0.01	
d : 0.40	] : 0.11	2 : 0.09	3 : 0.07	e : 0.07	4 : 0.05	i : 0.03	c : 0.03	h : 0.01	b : 0.01	g : 0.01	a : 0.01	= : 0.01	
] : 0.26	3 : 0.09	2 : 0.09	c : 0.07	g : 0.07	e : 0.07	4 : 0.05	i : 0.05	h : 0.03	d : 0.03	= : 0.03	b : 0.03	a : 0.01	f : 0.01	
b : 0.15	c : 0.13	d : 0.11	g : 0.09	f : 0.09	4 : 0.07	i : 0.07	= : 0.05	3 : 0.05	h : 0.03	2 : 0.03	a : 0.01	] : 0.01	e : 0.01	
d : 0.15	c : 0.15	b : 0.13	f : 0.11	g : 0.09	i : 0.07	4 : 0.05	= : 0.05	h : 0.03	3 : 0.03	e : 0.03	2 : 0.01	] : 0.01	
d : 0.15	f : 0.15	c : 0.11	e : 0.07	i : 0.07	g : 0.07	h : 0.05	= : 0.05	2 : 0.05	4 : 0.03	] : 0.03	3 : 0.03	a : 0.01	: : 0.01	b : 0.01	
f : 0.15	d : 0.13	] : 0.09	c : 0.09	e : 0.07	i : 0.07	2 : 0.07	g : 0.07	h : 0.05	= : 0.05	4 : 0.03	: : 0.01	b : 0.01	3 : 0.01	

#score	608.7312167250732
#seq	52
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_transcript_m2_run1.txt

#BEAR
"eeeeettttttttttteeeee]	chr6:49589437-49589707(-)$1	270	140	163	21.7520
a!!cccuuuuuuuuuuuuccc22	chr17:44197862-44198208(-)$1	346	236	259	23.2807
hhhhhhuuuuuuuuuuuuhhhhh	chr4:39457573-39457838(-)$1	265	4	27	21.0140
g[eeeeettttttttttteeeee	chr6:167396994-167397297(-)$1	303	41	64	21.8335
ggg[bbvvvvvvvvvvvvvbb]g	chr1:65721664-65721957(+)$1	293	183	206	23.1230
gggggguuuuuuuuuuuuggggg	chr5:10384172-10384461(+)$1	289	17	40	23.6543
ffff[auuuuuuuuuuuua]fff	chr1:21102001-21102260(-)$1	259	21	44	23.5904
eeeeyyyyyyyyyyyyyyyyeee	chr7:158585654-158585983(-)$1	329	11	34	20.5292
gg[ccctttttttttttccc]gg	chr5:65453280-65453553(+)$1	273	14	37	22.2718
!!cccwwwwwwwwwwwwwwccc4	chr1:167516591-167516889(-)$1	298	210	233	22.9710
ffffffvvvvvvvvvvvvvffff	chr8:91306251-91306503(+)$1	252	89	112	23.5460
###ccctttttttttttccc444	chr1:52533207-52533490(+)$1	283	228	251	21.6856
dddddwwwwwwwwwwwwwwdddd	chr22:19360593-19360861(-)$1	268	180	203	21.9389
ffffffuuuuuuuuuuuufffff	chr11:5441486-5441729(-)$1	243	199	222	22.9755
c!!cccuuuuuuuuuuuuccc22	chr15:27393694-27393938(+)$1	244	97	120	23.2933
eeeeewwwwwwwwwwwwwweeee	chr6:24782798-24783061(+)$1	263	129	152	22.6973
ffffffvvvvvvvvvvvvvffff	chr7:12426229-12426498(-)$1	269	212	235	23.5460
cc[cccvvvvvvvvvvvvvccc]	chr8:93835682-93835911(-)$1	229	53	76	24.0361
b[cccwwwwwwwwwwwwwwccc]	chr2:160571533-160571855(+)$1	322	26	49	22.8234
gggggguuuuuuuuuuuuggggg	chr7:119456597-119456857(-)$1	260	186	209	23.6543
c[dddduuuuuuuuuuuudddd]	chr5:12577587-12577869(+)$1	282	18	41	22.9604
======uuuuuuuuuuuu=====	chr2:24825468-24825765(+)$1	297	166	189	23.8395
iiiiiivvvvvvvvvvvvviiii	chr1:230362650-230363023(+)$1	373	191	214	24.0059
:eeeeettttttttttteeeeee	chr20:33489945-33490295(+)$1	350	230	253	20.6195
eeeeevvvvvvvvvvvvveeeee	chr12:11304986-11305252(-)$1	266	220	243	23.2818
fffffwwwwwwwwwwwwwwffff	chr7:120849887-120850145(+)$1	258	6	29	22.5733
eeeeevvvvvvvvvvvvveeeee	chr16:74627528-74627881(-)$1	353	209	232	23.2818
#ddddwwwwwwwwwwwwwwdddd	chr11:61576572-61576913(-)$1	341	157	180	22.1535
fffffftttttttttttffffff	chr21:23604030-23604312(+)$1	282	73	96	21.3055
gggggwwwwwwwwwwwwwwgggg	chr2:109211068-109211330(+)$1	262	78	101	23.1683
""cccvvvvvvvvvvvvvccc33	chr7:6518047-6518336(-)$1	289	182	205	23.6439
c[cccwwwwwwwwwwwwwwccc]	chr1:65783113-65783336(+)$1	223	150	173	23.0074
ffffyyyyyyyyyyyyyyyyfff	chr8:91326008-91326292(+)$1	284	163	186	20.4675
fffffwwwwwwwwwwwwwwffff	chrX:32461358-32461573(-)$1	215	63	86	22.5733
[eeeeevvvvvvvvvvvvveeee	chr9:124140637-124140948(+)$1	311	59	82	23.8666
ddddyyyyyyyyyyyyyyyyddd	chr7:119502260-119502525(-)$1	265	134	157	19.8704
bcccyyyyyyyyyyyyyyyyccc	chr2:175006448-175006754(-)$1	306	173	196	20.2048
iiiiiivvvvvvvvvvvvviiii	chr1:97219957-97220271(+)$1	314	100	123	24.0059
gggggguuuuuuuuuuuuggggg	chr3:6669978-6670226(+)$1	248	72	95	23.6543
======vvvvvvvvvvvvv====	chr7:120805112-120805356(+)$1	244	161	184	24.2523
ddd[bbwwwwwwwwwwwwwwbb]	chr8:91324880-91325166(+)$1	286	129	152	20.9346
g!!ddddtttttttttttdddd0	chr8:93857899-93858160(-)$1	261	158	181	20.9658
gggggwwwwwwwwwwwwwwgggg	chr6:89018380-89018648(-)$1	268	11	34	23.1683
%eeeeettttttttttteeeee4	chr7:116540183-116540463(+)$1	280	61	84	20.9935
ffffffvvvvvvvvvvvvvffff	chr15:23813447-23813735(+)$1	288	211	234	23.5460
iieeeeettttttttttteeeee	chr7:119398724-119398964(-)$1	240	23	46	21.7307
eeeeyyyyyyyyyyyyyyyyeee	chr1:52243956-52244217(+)$1	261	70	93	20.5292
ffffffvvvvvvvvvvvvvffff	chr15:23813581-23813842(+)$1	261	77	100	23.5460
##ddddvvvvvvvvvvvvvdddd	chr15:69101640-69101975(-)$1	335	17	40	23.1781
[ddddwwwwwwwwwwwwwwdddd	chr7:40104760-40105060(+)$1	300	81	104	22.2223
=======ttttttttttt=====	chr21:38823269-38823530(+)$1	261	133	156	22.2314
gggggwwwwwwwwwwwwwwgggg	chr2:187926801-187927067(+)$1	266	149	172	23.1683
f"""ccctttttttttttccc33	chr1:8800566-8800823(-)$1	257	58	81	21.9361
eeeeeeuuuuuuuuuuuueeeee	chr18:75698146-75698358(-)$1	212	37	60	23.1453
bb[ddddtttttttttttdddd]	chr21:44518722-44518963(-)$1	241	196	219	20.8232
gggggggtttttttttttggggg	chr4:32004703-32004990(+)$1	287	10	33	21.9478
ddd[bbvvvvvvvvvvvvvbb]d	chr1:51399594-51399905(-)$1	311	260	283	22.3844
:eeeeevvvvvvvvvvvvveeee	chr7:26229787-26230067(-)$1	280	82	105	22.8152
gggggwwwwwwwwwwwwwwgggg	chr6:76352575-76352860(+)$1	285	105	128	23.1683
##dddduuuuuuuuuuuudddd5	chr6:20417541-20417816(+)$1	275	207	230	21.9269
fffffftttttttttttffffff	chr11:5415107-5415382(-)$1	275	125	148	21.3055
gggggggtttttttttttggggg	chr11:93467272-93467499(-)$1	227	140	163	21.9478
&ddddwwwwwwwwwwwwwwdddd	chr7:120810487-120810717(+)$1	230	86	109	21.5646
gggggguuuuuuuuuuuuggggg	chr1:173990415-173990751(-)$1	336	186	209	23.6543
fffffwwwwwwwwwwwwwwffff	chr12:11102092-11102384(-)$1	292	31	54	22.5733
:ddddwwwwwwwwwwwwwwdddd	chr4:769503-769751(-)$1	248	143	166	21.1708

#otherMatches

#Seq PSSM
augcaaaauaaaauaaauuguag	chr6:49589437-49589707(-)$1	270	140	163	21.7520
GUUAACUUACACUAUCAUGUUUU	chr17:44197862-44198208(-)$1	346	236	259	23.2807
UCGAUUACAAUUUCAGAAAGUUG	chr4:39457573-39457838(-)$1	265	4	27	21.0140
aauuguuauugaauuugagauga	chr6:167396994-167397297(-)$1	303	41	64	21.8335
UAAUUAUCUUUCAAAUAUUUAUU	chr1:65721664-65721957(+)$1	293	183	206	23.1230
uauggcagcaaucagauggccgu	chr5:10384172-10384461(+)$1	289	17	40	23.6543
cuguaggcaguuauaacacaacg	chr1:21102001-21102260(-)$1	259	21	44	23.5904
auaauucagcauacaaaaauuug	chr7:158585654-158585983(-)$1	329	11	34	20.5292
CUCAAUUUAUCAAGAAUGUUCAG	chr5:65453280-65453553(+)$1	273	14	37	22.2718
CUGUAUAUAAAGUUAUUCUUACU	chr1:167516591-167516889(-)$1	298	210	233	22.9710
CAUAAUAAUACAAAAUUAAAUUG	chr8:91306251-91306503(+)$1	252	89	112	23.5460
CCUCUGCCCcccaaccucagccc	chr1:52533207-52533490(+)$1	283	228	251	21.6856
aagagcaaaaacuauaaaacucu	chr22:19360593-19360861(-)$1	268	180	203	21.9389
UGCUAUGCAAAUAAGGAAAUGGC	chr11:5441486-5441729(-)$1	243	199	222	22.9755
uuauacaccagugaccaaguagu	chr15:27393694-27393938(+)$1	244	97	120	23.2933
AGUUAAAUAUCAAGACAAAUAAC	chr6:24782798-24783061(+)$1	263	129	152	22.6973
UCCUUGGUCAGACAGAAAGCAAg	chr7:12426229-12426498(-)$1	269	212	235	23.5460
AAAACAUUUUCCCCACUCUUGUC	chr8:93835682-93835911(-)$1	229	53	76	24.0361
UGCCAGUAAUAAAGAACAAUGGG	chr2:160571533-160571855(+)$1	322	26	49	22.8234
uaguauauauaggguuuaauacu	chr7:119456597-119456857(-)$1	260	186	209	23.6543
AAGAACAUUUAAUUCUGAGUUCA	chr5:12577587-12577869(+)$1	282	18	41	22.9604
UUUAGUAUGUUAAUGUGAACUAA	chr2:24825468-24825765(+)$1	297	166	189	23.8395
auguaaauaaauuugaaacuuac	chr1:230362650-230363023(+)$1	373	191	214	24.0059
ugcugugaagaaaauaagcagug	chr20:33489945-33490295(+)$1	350	230	253	20.6195
UGUGCAAUUUUCUAAAAAGUAUA	chr12:11304986-11305252(-)$1	266	220	243	23.2818
cuucaaacuauccauuugaugag	chr7:120849887-120850145(+)$1	258	6	29	22.5733
UGACAGCAAAAGAAAUUAUGUUA	chr16:74627528-74627881(-)$1	353	209	232	23.2818
ACAGUAAAAUAUGACAGAAACUG	chr11:61576572-61576913(-)$1	341	157	180	22.1535
AUAUAAAAAAUGAUCACUUAUAU	chr21:23604030-23604312(+)$1	282	73	96	21.3055
auuaauuuuaauaauauguuuaa	chr2:109211068-109211330(+)$1	262	78	101	23.1683
aauucacugaagaauaacgaaag	chr7:6518047-6518336(-)$1	289	182	205	23.6439
aagcaaccagaugagccaaugcc	chr1:65783113-65783336(+)$1	223	150	173	23.0074
CUAGUAAAUCCAUCAUACAUUUA	chr8:91326008-91326292(+)$1	284	163	186	20.4675
CAAAACACUUAAUUUCACUUUUU	chrX:32461358-32461573(-)$1	215	63	86	22.5733
agauuugaaauuaaaaccaaaau	chr9:124140637-124140948(+)$1	311	59	82	23.8666
cAAAGUagaauaaaguaauauuu	chr7:119502260-119502525(-)$1	265	134	157	19.8704
GAGGAGAUAAAAAACUAAAACCU	chr2:175006448-175006754(-)$1	306	173	196	20.2048
uugcauaucaaaauucuaagugu	chr1:97219957-97220271(+)$1	314	100	123	24.0059
AAUCUAAACAAAAAAUCAUAGAU	chr3:6669978-6670226(+)$1	248	72	95	23.6543
GGAUAUAAACUUCACUUAAGUAU	chr7:120805112-120805356(+)$1	244	161	184	24.2523
CUUGAUUUAAUAAGAACAAUAUG	chr8:91324880-91325166(+)$1	286	129	152	20.9346
caacagcaaaaugacagagcuga	chr8:93857899-93858160(-)$1	261	158	181	20.9658
uggugaaaagguuaaaaaauacc	chr6:89018380-89018648(-)$1	268	11	34	23.1683
aaaugucauaaacuaaaacauua	chr7:116540183-116540463(+)$1	280	61	84	20.9935
AAUCUACAUACAACUuaauuaga	chr15:23813447-23813735(+)$1	288	211	234	23.5460
UUUCACAAUAAAGAGAGAUGUGA	chr7:119398724-119398964(-)$1	240	23	46	21.7307
ggauuaaaaaagcaggauuuauc	chr1:52243956-52244217(+)$1	261	70	93	20.5292
AAUCUACAUACAACUuaauuaga	chr15:23813581-23813842(+)$1	261	77	100	23.5460
ucauguuuuucucauuaucacau	chr15:69101640-69101975(-)$1	335	17	40	23.1781
cucuaaaauagaauaaaacuaga	chr7:40104760-40105060(+)$1	300	81	104	22.2223
agaauguaaagaaagaaaacauu	chr21:38823269-38823530(+)$1	261	133	156	22.2314
AUUAUAAAUCAAUAAACAAAUAA	chr2:187926801-187927067(+)$1	266	149	172	23.1683
uguguguguuaguuuucaacaaa	chr1:8800566-8800823(-)$1	257	58	81	21.9361
CAGCAACAGAACGAAUACUUGCU	chr18:75698146-75698358(-)$1	212	37	60	23.1453
GCUUUCUUGACUGACAAUAGAAU	chr21:44518722-44518963(-)$1	241	196	219	20.8232
CUGAGGCAAAAUAUAGAAGCUUU	chr4:32004703-32004990(+)$1	287	10	33	21.9478
ccaggaggagauaaaugaaucau	chr1:51399594-51399905(-)$1	311	260	283	22.3844
UGGUGCCUUCAUUUAAAAAGCAC	chr7:26229787-26230067(-)$1	280	82	105	22.8152
AAGGUGGAAAAAUAAAAAGAUUU	chr6:76352575-76352860(+)$1	285	105	128	23.1683
auaaguguaauuaaauaaacuuu	chr6:20417541-20417816(+)$1	275	207	230	21.9269
UUUUCCUGAUACUAAAUGGAAAA	chr11:5415107-5415382(-)$1	275	125	148	21.3055
CAUUAUAUUCCUGUAUUUUAUAA	chr11:93467272-93467499(-)$1	227	140	163	21.9478
ccugaugaauaauaaguacucag	chr7:120810487-120810717(+)$1	230	86	109	21.5646
GGGAUGCGCCUCUCUAAACAUCU	chr1:173990415-173990751(-)$1	336	186	209	23.6543
ggagauaaacuuauaauuuuuuc	chr12:11102092-11102384(-)$1	292	31	54	22.5733
AAGCCAACAUUAAAAAAAAggcu	chr4:769503-769751(-)$1	248	143	166	21.1708

#DB
.(((((...........))))).	chr6:49589437-49589707(-)$1	1	140	163	21.7520
(..(((............)))..	chr17:44197862-44198208(-)$1	1	236	259	23.2807
((((((............)))))	chr4:39457573-39457838(-)$1	1	4	27	21.0140
(.(((((...........)))))	chr6:167396994-167397297(-)$1	1	41	64	21.8335
(((.((.............)).)	chr1:65721664-65721957(+)$1	1	183	206	23.1230
((((((............)))))	chr5:10384172-10384461(+)$1	1	17	40	23.6543
((((.(............).)))	chr1:21102001-21102260(-)$1	1	21	44	23.5904
((((................)))	chr7:158585654-158585983(-)$1	1	11	34	20.5292
((.(((...........))).))	chr5:65453280-65453553(+)$1	1	14	37	22.2718
..(((..............))).	chr1:167516591-167516889(-)$1	1	210	233	22.9710
((((((.............))))	chr8:91306251-91306503(+)$1	1	89	112	23.5460
...(((...........)))...	chr1:52533207-52533490(+)$1	1	228	251	21.6856
(((((..............))))	chr22:19360593-19360861(-)$1	1	180	203	21.9389
((((((............)))))	chr11:5441486-5441729(-)$1	1	199	222	22.9755
(..(((............)))..	chr15:27393694-27393938(+)$1	1	97	120	23.2933
(((((..............))))	chr6:24782798-24783061(+)$1	1	129	152	22.6973
((((((.............))))	chr7:12426229-12426498(-)$1	1	212	235	23.5460
((.(((.............))).	chr8:93835682-93835911(-)$1	1	53	76	24.0361
(.(((..............))).	chr2:160571533-160571855(+)$1	1	26	49	22.8234
((((((............)))))	chr7:119456597-119456857(-)$1	1	186	209	23.6543
(.((((............)))).	chr5:12577587-12577869(+)$1	1	18	41	22.9604
((((((............)))))	chr2:24825468-24825765(+)$1	1	166	189	23.8395
((((((.............))))	chr1:230362650-230363023(+)$1	1	191	214	24.0059
.(((((...........)))))(	chr20:33489945-33490295(+)$1	1	230	253	20.6195
(((((.............)))))	chr12:11304986-11305252(-)$1	1	220	243	23.2818
(((((..............))))	chr7:120849887-120850145(+)$1	1	6	29	22.5733
(((((.............)))))	chr16:74627528-74627881(-)$1	1	209	232	23.2818
.((((..............))))	chr11:61576572-61576913(-)$1	1	157	180	22.1535
((((((...........))))))	chr21:23604030-23604312(+)$1	1	73	96	21.3055
(((((..............))))	chr2:109211068-109211330(+)$1	1	78	101	23.1683
..(((.............)))..	chr7:6518047-6518336(-)$1	1	182	205	23.6439
(.(((..............))).	chr1:65783113-65783336(+)$1	1	150	173	23.0074
((((................)))	chr8:91326008-91326292(+)$1	1	163	186	20.4675
(((((..............))))	chrX:32461358-32461573(-)$1	1	63	86	22.5733
.(((((.............))))	chr9:124140637-124140948(+)$1	1	59	82	23.8666
((((................)))	chr7:119502260-119502525(-)$1	1	134	157	19.8704
)(((................)))	chr2:175006448-175006754(-)$1	1	173	196	20.2048
((((((.............))))	chr1:97219957-97220271(+)$1	1	100	123	24.0059
((((((............)))))	chr3:6669978-6670226(+)$1	1	72	95	23.6543
((((((.............))))	chr7:120805112-120805356(+)$1	1	161	184	24.2523
(((.((..............)).	chr8:91324880-91325166(+)$1	1	129	152	20.9346
(..((((...........)))).	chr8:93857899-93858160(-)$1	1	158	181	20.9658
(((((..............))))	chr6:89018380-89018648(-)$1	1	11	34	23.1683
.(((((...........))))).	chr7:116540183-116540463(+)$1	1	61	84	20.9935
((((((.............))))	chr15:23813447-23813735(+)$1	1	211	234	23.5460
(((((((...........)))))	chr7:119398724-119398964(-)$1	1	23	46	21.7307
((((................)))	chr1:52243956-52244217(+)$1	1	70	93	20.5292
((((((.............))))	chr15:23813581-23813842(+)$1	1	77	100	23.5460
..((((.............))))	chr15:69101640-69101975(-)$1	1	17	40	23.1781
.((((..............))))	chr7:40104760-40105060(+)$1	1	81	104	22.2223
(((((((...........)))))	chr21:38823269-38823530(+)$1	1	133	156	22.2314
(((((..............))))	chr2:187926801-187927067(+)$1	1	149	172	23.1683
(...(((...........)))..	chr1:8800566-8800823(-)$1	1	58	81	21.9361
)(((((............)))))	chr18:75698146-75698358(-)$1	1	37	60	23.1453
((.((((...........)))).	chr21:44518722-44518963(-)$1	1	196	219	20.8232
(((((((...........)))))	chr4:32004703-32004990(+)$1	1	10	33	21.9478
(((.((.............)).)	chr1:51399594-51399905(-)$1	1	260	283	22.3844
.(((((.............))))	chr7:26229787-26230067(-)$1	1	82	105	22.8152
(((((..............))))	chr6:76352575-76352860(+)$1	1	105	128	23.1683
..((((............)))).	chr6:20417541-20417816(+)$1	1	207	230	21.9269
((((((...........))))))	chr11:5415107-5415382(-)$1	1	125	148	21.3055
(((((((...........)))))	chr11:93467272-93467499(-)$1	1	140	163	21.9478
.((((..............))))	chr7:120810487-120810717(+)$1	1	86	109	21.5646
((((((............)))))	chr1:173990415-173990751(-)$1	1	186	209	23.6543
(((((..............))))	chr12:11102092-11102384(-)$1	1	31	54	22.5733
.((((..............))))	chr4:769503-769751(-)$1	1	143	166	21.1708

#PSSM
g : 0.21	f : 0.19	e : 0.09	# : 0.06	d : 0.06	c : 0.06	b : 0.04	= : 0.04	i : 0.04	: : 0.04	" : 0.03	[ : 0.03	a : 0.01	h : 0.01	! : 0.01	% : 0.01	& : 0.01	
g : 0.18	f : 0.18	e : 0.16	d : 0.12	! : 0.06	[ : 0.06	# : 0.04	= : 0.04	i : 0.04	c : 0.03	" : 0.03	h : 0.01	b : 0.01	
e : 0.19	f : 0.18	g : 0.16	d : 0.16	c : 0.07	! : 0.04	[ : 0.04	= : 0.04	i : 0.03	h : 0.01	# : 0.01	" : 0.01	
e : 0.19	f : 0.18	d : 0.16	c : 0.15	g : 0.15	[ : 0.04	= : 0.04	i : 0.03	h : 0.01	" : 0.01	
e : 0.16	c : 0.15	g : 0.15	f : 0.15	d : 0.15	y : 0.07	b : 0.04	= : 0.04	i : 0.03	h : 0.01	[ : 0.01	
w : 0.24	e : 0.12	f : 0.10	c : 0.09	g : 0.09	y : 0.07	d : 0.07	b : 0.04	= : 0.04	v : 0.04	i : 0.03	h : 0.01	a : 0.01	
w : 0.25	v : 0.24	u : 0.19	t : 0.10	y : 0.07	e : 0.03	d : 0.03	g : 0.03	= : 0.01	c : 0.01	
w : 0.25	v : 0.24	t : 0.22	u : 0.19	y : 0.07	
w : 0.25	v : 0.24	t : 0.22	u : 0.19	y : 0.07	
w : 0.25	v : 0.24	t : 0.22	u : 0.19	y : 0.07	
w : 0.25	v : 0.24	t : 0.22	u : 0.19	y : 0.07	
w : 0.25	v : 0.24	t : 0.22	u : 0.19	y : 0.07	
w : 0.25	v : 0.24	t : 0.22	u : 0.19	y : 0.07	
w : 0.25	v : 0.24	t : 0.22	u : 0.19	y : 0.07	
w : 0.25	v : 0.24	t : 0.22	u : 0.19	y : 0.07	
w : 0.25	v : 0.24	t : 0.22	u : 0.19	y : 0.07	
w : 0.25	v : 0.24	t : 0.22	u : 0.19	y : 0.07	
w : 0.25	v : 0.24	u : 0.19	t : 0.12	y : 0.07	e : 0.04	c : 0.03	f : 0.03	
w : 0.25	v : 0.19	e : 0.12	c : 0.09	g : 0.09	y : 0.07	d : 0.06	f : 0.04	= : 0.03	h : 0.01	a : 0.01	
e : 0.16	c : 0.15	g : 0.15	f : 0.15	d : 0.15	y : 0.07	= : 0.04	b : 0.03	i : 0.03	h : 0.01	] : 0.01	w : 0.01	
e : 0.19	f : 0.18	d : 0.16	g : 0.15	c : 0.13	b : 0.04	= : 0.04	i : 0.03	h : 0.01	] : 0.01	4 : 0.01	
e : 0.19	f : 0.18	g : 0.16	d : 0.16	c : 0.07	= : 0.04	2 : 0.03	] : 0.03	i : 0.03	3 : 0.03	h : 0.01	4 : 0.01	b : 0.01	
g : 0.18	f : 0.18	e : 0.16	d : 0.12	] : 0.10	4 : 0.04	= : 0.04	2 : 0.03	i : 0.03	3 : 0.03	h : 0.01	c : 0.01	0 : 0.01	5 : 0.01	

#score	1483.5329445343157
#seq	66
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_CDS_m1_run2.txt

#BEAR
####ccc[dddd!!bboooooobbdddd22ccc22gggg	chr17:42430033-42430270(+)$1	237	9	48	12.5125
[dddd[ggggggg[ddddnnnnndddd333gggggggdd	chr9:116822427-116822631(-)$1	204	110	149	15.9779
gggg[bb[dddd!!ddddoooooodddd]dddd333bbg	chr19:45412250-45412471(+)$1	221	86	125	14.1188
[bb"""ccc$$$$$ddddnnnnndddd333ccc333bb]	chr12:56708542-56708848(-)$1	306	11	50	18.8321
=========####cccrrrrrrrrrccc22=========	chr2:98264467-98264677(+)$1	210	160	199	14.2243
ccc[ccc[eeeee!!a[ccclllccca22eeeee]ccc]	chr1:84967408-84967632(-)$1	224	9	48	12.0394
bb[ccc[ffffff[ddddnnnnndddd]ffffff]ccc]	chr10:5149583-5149874(+)$1	291	0	39	13.1336
g[ccc[ccc[bb[ccc[bboooooobb333cccbb]ccc	chr19:7585568-7585871(+)$1	303	180	219	12.2592
cceeeeeccc"""eeeeellleeeee4444ccc]eeeee	chr12:6601477-6601726(-)$1	249	1	40	13.9677
======[ccc"""cccqqqqqqqqccc333ccc======	chr2:178083912-178084143(+)$1	231	163	202	13.9645
gggggg!!dddd[a[cccnnnnnccc22a]dddd333gg	chr3:53259657-53259930(-)$1	273	48	87	14.6223
"ccc!!dddd!!eeeeeooooooeeeee22dddd22ccc	chr11:46760793-46761028(+)$1	235	36	75	13.8444
ddd!!ccc!!ccc[ddddooooooddddccc]ccc22dd	chr12:120638432-120638648(-)$1	216	175	214	13.8711
[bb[bb!!eeeee!!ddddllldddd4444eeeee22bb	chr19:5903521-5903749(-)$1	228	127	166	14.1866
g!!ffffff[a"""ddddnnnnndddd]a]ffffff22g	chr11:812661-812864(+)$1	203	124	163	15.5671
ee[bb[ccc$$$$$ddddnnnnndddd]ccc]bb]eeee	chr16:18794311-18794524(-)$1	213	96	135	14.6713
eee"""eeeee"""ddddnnnnndddd333eeeee333e	chr19:50002687-50002925(+)$1	238	145	184	18.4256
ff!!eeeee$$$$$cccooooooccc4444eeeee333f	chr12:56510471-56510677(+)$1	206	161	200	16.8225
cc####dddd####cccooooooccc333dddd333ccc	chr12:53291084-53291370(-)$1	286	80	119	17.1627
$hhhhhhhh$$$$$cccooooooccc4444hhhhhhhhf	chr22:45958872-45959172(+)$1	300	110	149	13.4054
d4444cccccc!!ddddoooooodddd22cccddddeee	chr14:70809288-70809544(-)$1	256	141	180	14.1501
ggggg!!eeeee[ddddoooooodddd333eeeee5555	chr19:45411735-45412010(+)$1	275	227	266	13.9653
bccc[eeeee$$$$$cccnnnnnccc666666eeeee33	chrX:47001709-47001939(-)$1	230	67	106	12.6545
==========[dddd[bblllbbdddd22==========	chr6:167369481-167369738(-)$1	257	175	214	13.2244
fbb[ccc[eeeee[ddddoooooodddd]eeeee333cc	chr19:58905859-58906062(+)$1	203	160	199	14.4784
bb!!ffffff####ddddnnnnndddd333ffffff]bb	chr17:74035623-74035908(-)$1	285	15	54	16.9647
ffffff[ccc"""eeeeemmmmeeeee333ccc22ffff	chr16:2294398-2294655(-)$1	257	11	50	13.5825
$hhhhhhhh"""a!!ddddllldddd22a333hhhhhhh	chr19:18707358-18707613(-)$1	255	113	152	12.9407
[eeeee[ccc####ddddllldddd4444ccc]eeeeee	chr7:96318154-96318379(-)$1	225	28	67	15.2439
:::==========eeeeennnnneeeee333========	chr11:116707757-116707961(-)$1	204	30	69	12.4697
ddd"""dddd####cccooooooccc4444dddddddd]	chr11:6703247-6703547(-)$1	300	81	120	15.8826
h[ccc[eeeee[eeeeennnnneeeee333eeeee22cc	chr3:50355375-50355720(-)$1	345	62	101	13.6791
bb[bb[ccc[ccc!!cccnnnnncccccc]ccc]bb]bb	chr8:146015161-146015382(-)$1	221	107	146	12.5368
::ccc"""ccc[bb[cccnnnnnccc]bb]ccc333ccc	chr9:140446801-140447078(+)$1	277	34	73	11.6716
eebbeeeee[a!!ddddnnnnndddd22a]eeeee]bb]	chr7:100887266-100887513(-)$1	247	130	169	14.3142
=========="""cccqqqqqqqqccc333=========	chr5:139625435-139625709(-)$1	274	200	239	13.9704
ddd[ffffff####ddddnnnnndddd4444ffffff33	chr12:7045011-7045266(+)$1	255	8	47	16.7072
ffff[dddd####ccc[ammmma]ccc22ddddffffff	chr1:113246156-113246409(-)$1	253	67	106	12.0121
gggg####bb####ddddmmmmdddd22bb]ggggggg5	chr11:116703474-116703699(+)$1	225	95	134	13.4955
ddd[dddd[ccc!!ddddmmmmdddd4444ccc]dddd]	chr19:45410925-45411165(+)$1	240	153	192	13.8212
ggggggg!!ccc"""cccnnnnnccc]ccc]ggggggg:	chr19:34890704-34890929(+)$1	225	92	131	13.2849
+ccc"""ccc"""ddddoooooodddd333cccccc===	chr20:30156861-30157109(+)$1	248	53	92	18.3908
gggg####bb####ddddmmmmdddd22bb]ggggggg5	chr11:116703445-116703674(+)$1	229	124	163	13.4955
[bbbb!!eeeee[ddddnnnnndddd333eeeee333bb	chr7:150773327-150773629(+)$1	302	38	77	14.9691
ggg!!ccc[ccc!!ddddmmmmddddccc]ccc333ggg	chr5:149827118-149827367(-)$1	249	140	179	14.7971
eee"""ccc!!eeeeeaccclllccc]a22eeeee22cc	chr9:90345861-90346145(+)$1	284	134	173	12.6712
[eeeee[bb$$$$$eeeeellleeeee4444bb]eeeee	chr3:101399871-101400129(-)$1	258	15	54	12.6045
=========$$$$$ddddllldddd55555=========	chr17:7307239-7307513(-)$1	274	83	122	13.5709
CC:ccc[eeeee[ddddoooooodddd333eeeee22cc	chr17:38151667-38151881(+)$1	214	61	100	13.9195
ddd####ccc[a!!ddddoooooodddda]ccc333ddd	chr20:60883699-60883972(+)$1	273	136	175	16.1581
ggggggg"""bb[ddddoooooodddd4444bb333ggg	chrX:48386620-48386924(+)$1	304	140	179	16.5886
ffff!!bb$$$$$ddddoooooodddd4444bbffffff	chr9:138395865-138396149(+)$1	284	127	166	15.2863
CC================nnnnn================	chr2:132249347-132249571(-)$1	224	132	171	12.3097
bbggggggg"""eeeeeooooooeeeeeggggggg]bbG	chr17:7481685-7481935(+)$1	250	134	173	12.6745
fffffeeeee[a!!ddddmmmmdddd22a22eeeee]ff	chr20:62369872-62370126(+)$1	254	175	214	13.5431
[bb[eeeee"""a[ccc[annnnna]ccc]a]eeeee]b	chr11:18428688-18428925(+)$1	237	177	216	12.5960

#otherMatches

#Seq PSSM
UGAUCGGCGCCACUGCUGUCCUGCUGGCUUCCGCUGCGC	chr17:42430033-42430270(+)$1	237	9	48	12.5125
UGACAACUGGCCGGUCUGCAAGUCAGAGGAUGGCCAGUG	chr9:116822427-116822631(-)$1	204	110	149	15.9779
GAGGAGCAGGCCCAGCAGAUACGCCUGCAGGCCGAGGCC	chr19:45412250-45412471(+)$1	221	86	125	14.1188
AUGAAUGGAAAUCCUGGGUUGAUCCCAUUCUCCUCACAC	chr12:56708542-56708848(-)$1	306	11	50	18.8321
CUAGCCAUUGCAUUGGCUCCUUCUCCCAUAGAUGGCUGG	chr2:98264467-98264677(+)$1	210	160	199	14.2243
UUCUGUCUGCAGAAUGCUCAACAUGACCCUCUGCUGACU	chr1:84967408-84967632(-)$1	224	9	48	12.0394
UGAAAUCACUUUACUACUCCCCUAGUAAUGGAGUCAUUG	chr10:5149583-5149874(+)$1	291	0	39	13.1336
CGUGGCACUGUCAGCCCAGCCCUCCCUACCGGCGAGAGU	chr19:7585568-7585871(+)$1	303	180	219	12.2592
GCUCAGCAAGAUGCAACCGUGGGUUGAAAGCUUAGCUGG	chr12:6601477-6601726(-)$1	249	1	40	13.9677
AAGAAUAUGUGGAACUGUUCACUGAGUGUAAUAAUUUUU	chr2:178083912-178084143(+)$1	231	163	202	13.9645
GCAGUUAACCGGGUACCAAGAAGUGGGAAGCCGGCUGAG	chr3:53259657-53259930(-)$1	273	48	87	14.6223
CGCUGGUAUCAAAUGGGCAUCGUCUCAUGGGGUGAAGGC	chr11:46760793-46761028(+)$1	235	36	75	13.8444
Cagcugcuaugugcugagggucuacucacaccggcuacu	chr12:120638432-120638648(-)$1	216	175	214	13.8711
GUGAGCGCCGGCCGGGCCCCGAGGGUGGAGGGCCGAGGC	chr19:5903521-5903749(-)$1	228	127	166	14.1866
GAGGAGUCUGAAGAGUCAGAUGAUGACAUGGGAUUUGGC	chr11:812661-812864(+)$1	203	124	163	15.5671
AUAGUUUCAUUGUACUGACAACCUCAGCUGGCAUCAUGG	chr16:18794311-18794524(-)$1	213	96	135	14.6713
UUCAACGUGCUCAAGGUCACCAAGGCUGCCGGCACCAAG	chr19:50002687-50002925(+)$1	238	145	184	18.4256
AGCGAGGAGACGAAGGCAAGUCCGCCAUACCUCCUGAAC	chr12:56510471-56510677(+)$1	206	161	200	16.8225
CAGGGCCGUGGUUGUGAAGAAGAUCGAGACACGUGAUGG	chr12:53291084-53291370(-)$1	286	80	119	17.1627
UCACCACCCGGAAGGUGAGCCCCCACAGUGGGGUGGUGG	chr22:45958872-45959172(+)$1	300	110	149	13.4054
AAAUCCGAUAUGAUGCUGUGAAGAGUAAAGUAAGAAAUA	chr14:70809288-70809544(-)$1	256	141	180	14.1501
GCGGCGAGGUGCAGGCCAUGCUCGGCCAGAGCACCGAGG	chr19:45411735-45412010(+)$1	275	227	266	13.9653
CCUCACGUCUACCCCUGCUAUUUGCACUACCAGGAUGAA	chrX:47001709-47001939(-)$1	230	67	106	12.6545
AGUGGGGAGCGUGGGAGCCGGGCCCUAGAGCUUUCCACU	chr6:167369481-167369738(-)$1	257	175	214	13.2244
AGAAUUCAGAGCUGUGUGUCUCCUUGCAGGGCUCCUCGA	chr19:58905859-58906062(+)$1	203	160	199	14.4784
UGGCCCUCAACCAUGUGGCUUUCCCACCCCUUGAGGACA	chr17:74035623-74035908(-)$1	285	15	54	16.9647
GCGUCGUGCACCUGGGCUCCCCAGCCCUCCUGCUGUGAU	chr16:2294398-2294655(-)$1	257	11	50	13.5825
AUGGCUCCAAGAAAGCCGGGAUCUGGAGUGAGUGGAGCC	chr19:18707358-18707613(-)$1	255	113	152	12.9407
AUUUAUUGUAUUGUUUCUAAAAGAAUGUUUAUUAUAAAG	chr7:96318154-96318379(-)$1	225	28	67	15.2439
UUCGGCUCAGAUCUCAGCCCACAGCUGGCCUGAUCUGGG	chr11:116707757-116707961(-)$1	204	30	69	12.4697
CAGAGACAGCCACCUUACACUCCUAAACCAGCUGCUGCA	chr11:6703247-6703547(-)$1	300	81	120	15.8826
CAUAGGCAGGCAGCUGGAGGUGCCAGCGAGGCCUGGGCU	chr3:50355375-50355720(-)$1	345	62	101	13.6791
CCUGCUGGCCGCAAAGUGGGUCUCAUUGCUGCCCGCCGG	chr8:146015161-146015382(-)$1	221	107	146	12.5368
AAAGGACUUCAAGGACGGUACCUUCGACCCUGACAACCU	chr9:140446801-140447078(+)$1	277	34	73	11.6716
GCUCGGUGUCCAAGAGCACGCAGUUUGAGUACGCCUGGU	chr7:100887266-100887513(-)$1	247	130	169	14.3142
GGCAGAGGAGUGUCUGCAGGGAAACAGCUUCUCCUCUGC	chr5:139625435-139625709(-)$1	274	200	239	13.9704
CCAUGGAGCCCCCCACAUCUCGAAUGUUCCAGGCUCCUC	chr12:7045011-7045266(+)$1	255	8	47	16.7072
AGGAUCAGUUUCCGGAGGUCUACGUCCCUACUGUCUUUG	chr1:113246156-113246409(-)$1	253	67	106	12.0121
GGUCAGACCAACUUCAGCCGUGGCUGCCUGAGACCUCAA	chr11:116703474-116703699(+)$1	225	95	134	13.4955
ACCGAGUGGCAGAGCGGCCAGCGCUGGGAACUGGCACUG	chr19:45410925-45411165(+)$1	240	153	192	13.8212
UCUUGGCAGAGUGGAGCUGGGAAAGCAGCUGGCUAAGAA	chr19:34890704-34890929(+)$1	225	92	131	13.2849
UUGGUCAGUUAUGAGGAGUCAAAUCCUAAGGAUCCAGCG	chr20:30156861-30157109(+)$1	248	53	92	18.3908
GGUCAGACCAACUUCAGCCGUGGCUGCCUGAGACCUCAA	chr11:116703445-116703674(+)$1	229	124	163	13.4955
ACACACAGCUGGAUGCUAACGAGGCAGAGCCGGUGUUUG	chr7:150773327-150773629(+)$1	302	38	77	14.9691
GGAGAGAAUGUAUUUGGUGUCUGCCAUAUCUUUGCAUCC	chr5:149827118-149827367(-)$1	249	140	179	14.7971
UCAGCAGCCAGCUACCCCACUGUGUGAGCUGGUGGACGG	chr9:90345861-90346145(+)$1	284	134	173	12.6712
GUAAUAAUAGGGUAACAAAAGUUUUGUGGAGUAAUAUUG	chr3:101399871-101400129(-)$1	258	15	54	12.6045
UGGUCCGGUGCGUCCUGUUCUACAGCUAUGGCCGGGCCA	chr17:7307239-7307513(-)$1	274	83	122	13.5709
CCAGAAGCUGCAGUUGGAUAGCCCCGAAGAUGCAGAGUU	chr17:38151667-38151881(+)$1	214	61	100	13.9195
AGGAACUGGGCGCUUGCAGUGCGUUGCACACCCUCACCU	chr20:60883699-60883972(+)$1	273	136	175	16.1581
UGUGCUUGAUGCUGUGAAGCACCUCACUCAUGCCCAGAG	chrX:48386620-48386924(+)$1	304	140	179	16.5886
CCCAAAGCAAACCACAGCCAAGCCUGUCUGAGCUGGGAG	chr9:138395865-138396149(+)$1	284	127	166	15.2863
GGGCCCGCUGUCCCUGCCCCAGUGGCGGGGGUGGCGGGC	chr2:132249347-132249571(-)$1	224	132	171	12.3097
CCCAGCCCCAGCCAGGGCUCAAUCUCUGGGGGCUGAGGA	chr17:7481685-7481935(+)$1	250	134	173	12.6745
CCCUGGCGGGUGACCUGGCCUACCAGACCCUCCCGCUCA	chr20:62369872-62370126(+)$1	254	175	214	13.5431
CAACAGGAUUCUAGGUGGAGGUUGUGCAUGUUGUCCUUU	chr11:18428688-18428925(+)$1	237	177	216	12.5960

#DB
....(((.((((..((......))))))..)))..))))	chr17:42430033-42430270(+)$1	1	9	48	12.5125
.((((.(((((((.((((.....))))...)))))))))	chr9:116822427-116822631(-)$1	1	110	149	15.9779
((((.((.((((..((((......)))).))))...)))	chr19:45412250-45412471(+)$1	1	86	125	14.1188
.((...(((.....((((.....))))...)))...)).	chr12:56708542-56708848(-)$1	1	11	50	18.8321
(((((((((....(((.........)))..)))))))))	chr2:98264467-98264677(+)$1	1	160	199	14.2243
(((.(((.(((((..(.(((...))))..))))).))).	chr1:84967408-84967632(-)$1	1	9	48	12.0394
((.(((.((((((.((((.....)))).)))))).))).	chr10:5149583-5149874(+)$1	1	0	39	13.1336
(.(((.(((.((.(((.((......))...))))).)))	chr19:7585568-7585871(+)$1	1	180	219	12.2592
((((((((((...(((((...)))))....))).)))))	chr12:6601477-6601726(-)$1	1	1	40	13.9677
((((((.(((...(((........)))...)))))))))	chr2:178083912-178084143(+)$1	1	163	202	13.9645
((((((..((((.(.(((.....)))..).))))...))	chr3:53259657-53259930(-)$1	1	48	87	14.6223
.(((..((((..(((((......)))))..))))..)))	chr11:46760793-46761028(+)$1	1	36	75	13.8444
(((..(((..(((.((((......))))))).)))..))	chr12:120638432-120638648(-)$1	1	175	214	13.8711
.((.((..(((((..((((...))))....)))))..))	chr19:5903521-5903749(-)$1	1	127	166	14.1866
(..((((((.(...((((.....)))).).))))))..)	chr11:812661-812864(+)$1	1	124	163	15.5671
((.((.(((.....((((.....)))).))).)).))))	chr16:18794311-18794524(-)$1	1	96	135	14.6713
(((...(((((...((((.....))))...)))))...)	chr19:50002687-50002925(+)$1	1	145	184	18.4256
((..(((((.....(((......)))....)))))...)	chr12:56510471-56510677(+)$1	1	161	200	16.8225
((....((((....(((......)))...))))...)))	chr12:53291084-53291370(-)$1	1	80	119	17.1627
.((((((((.....(((......)))....)))))))))	chr22:45958872-45959172(+)$1	1	110	149	13.4054
)....)))(((..((((......))))..)))(((((((	chr14:70809288-70809544(-)$1	1	141	180	14.1501
(((((..(((((.((((......))))...)))))....	chr19:45411735-45412010(+)$1	1	227	266	13.9653
((((.(((((.....(((.....)))......)))))..	chrX:47001709-47001939(-)$1	1	67	106	12.6545
((((((((((.((((.((...))))))..))))))))))	chr6:167369481-167369738(-)$1	1	175	214	13.2244
)((.(((.(((((.((((......)))).)))))...))	chr19:58905859-58906062(+)$1	1	160	199	14.4784
((..((((((....((((.....))))...)))))).))	chr17:74035623-74035908(-)$1	1	15	54	16.9647
((((((.(((...(((((....)))))...)))..))))	chr16:2294398-2294655(-)$1	1	11	50	13.5825
.((((((((...(..((((...))))..)...)))))))	chr19:18707358-18707613(-)$1	1	113	152	12.9407
.(((((.(((....((((...))))....))).))))))	chr7:96318154-96318379(-)$1	1	28	67	15.2439
...(((((((((((((((.....)))))...))))))))	chr11:116707757-116707961(-)$1	1	30	69	12.4697
(((...((((....(((......)))....)))))))).	chr11:6703247-6703547(-)$1	1	81	120	15.8826
(.(((.(((((.(((((.....)))))...)))))..))	chr3:50355375-50355720(-)$1	1	62	101	13.6791
((.((.(((.(((..(((.....)))))).))).)).))	chr8:146015161-146015382(-)$1	1	107	146	12.5368
..(((...(((.((.(((.....))).)).)))...)))	chr9:140446801-140447078(+)$1	1	34	73	11.6716
(((((((((.(..((((.....))))..).))))).)).	chr7:100887266-100887513(-)$1	1	130	169	14.3142
((((((((((...(((........)))...)))))))))	chr5:139625435-139625709(-)$1	1	200	239	13.9704
(((.((((((....((((.....))))....))))))..	chr12:7045011-7045266(+)$1	1	8	47	16.7072
((((.((((....(((.(....).)))..))))))))))	chr1:113246156-113246409(-)$1	1	67	106	12.0121
((((....((....((((....))))..)).))))))).	chr11:116703474-116703699(+)$1	1	95	134	13.4955
(((.((((.(((..((((....))))....))).)))).	chr19:45410925-45411165(+)$1	1	153	192	13.8212
(((((((..(((...(((.....))).))).))))))).	chr19:34890704-34890929(+)$1	1	92	131	13.2849
.(((...(((...((((......))))...)))))))))	chr20:30156861-30157109(+)$1	1	53	92	18.3908
((((....((....((((....))))..)).))))))).	chr11:116703445-116703674(+)$1	1	124	163	13.4955
.((((..(((((.((((.....))))...)))))...))	chr7:150773327-150773629(+)$1	1	38	77	14.9691
(((..(((.(((..((((....))))))).)))...)))	chr5:149827118-149827367(-)$1	1	140	179	14.7971
(((...(((..(((((((((...))).)..)))))..))	chr9:90345861-90346145(+)$1	1	134	173	12.6712
.(((((.((.....(((((...)))))....)).)))))	chr3:101399871-101400129(-)$1	1	15	54	12.6045
(((((((((.....((((...)))).....)))))))))	chr17:7307239-7307513(-)$1	1	83	122	13.5709
((.(((.(((((.((((......))))...)))))..))	chr17:38151667-38151881(+)$1	1	61	100	13.9195
(((....(((.(..((((......))))).)))...)))	chr20:60883699-60883972(+)$1	1	136	175	16.1581
(((((((...((.((((......))))....))...)))	chrX:48386620-48386924(+)$1	1	140	179	16.5886
((((..((.....((((......))))....))))))))	chr9:138395865-138396149(+)$1	1	127	166	15.2863
))((((((((((((((((.....))))))))))))))))	chr2:132249347-132249571(-)$1	1	132	171	12.3097
(((((((((...(((((......)))))))))))).)))	chr17:7481685-7481935(+)$1	1	134	173	12.6745
((((((((((.(..((((....))))..)..))))).))	chr20:62369872-62370126(+)$1	1	175	214	13.5431
.((.(((((...(.(((.(.....).))).).))))).)	chr11:18428688-18428925(+)$1	1	177	216	12.5960

#PSSM
g : 0.17	[ : 0.12	d : 0.10	f : 0.10	= : 0.08	b : 0.08	e : 0.07	c : 0.05	$ : 0.03	: : 0.03	C : 0.03	# : 0.01	" : 0.01	h : 0.01	+ : 0.01	
b : 0.16	g : 0.14	d : 0.10	c : 0.10	e : 0.10	= : 0.08	f : 0.08	[ : 0.03	h : 0.03	: : 0.03	C : 0.03	# : 0.01	! : 0.01	4 : 0.01	
g : 0.16	c : 0.12	d : 0.10	b : 0.10	= : 0.10	e : 0.08	f : 0.07	[ : 0.05	! : 0.05	# : 0.03	h : 0.03	: : 0.03	4 : 0.01	
g : 0.14	c : 0.14	= : 0.12	[ : 0.10	f : 0.08	" : 0.07	! : 0.07	b : 0.07	# : 0.05	e : 0.05	h : 0.03	d : 0.01	4 : 0.01	
c : 0.14	= : 0.12	e : 0.10	" : 0.08	g : 0.08	f : 0.08	! : 0.07	b : 0.07	# : 0.07	[ : 0.05	d : 0.03	h : 0.03	4 : 0.01	
c : 0.14	e : 0.14	= : 0.12	" : 0.10	[ : 0.08	g : 0.07	! : 0.07	f : 0.07	# : 0.07	b : 0.03	h : 0.03	d : 0.03	
c : 0.19	e : 0.14	= : 0.10	[ : 0.10	d : 0.08	g : 0.07	! : 0.07	f : 0.05	# : 0.05	b : 0.03	h : 0.03	" : 0.03	
c : 0.24	e : 0.17	= : 0.10	d : 0.08	[ : 0.07	f : 0.07	! : 0.05	g : 0.03	h : 0.03	" : 0.03	# : 0.03	b : 0.03	
c : 0.23	e : 0.23	d : 0.12	= : 0.10	f : 0.07	b : 0.05	g : 0.03	! : 0.03	h : 0.03	[ : 0.03	" : 0.01	$ : 0.01	
c : 0.19	e : 0.17	$ : 0.12	d : 0.10	[ : 0.07	= : 0.07	" : 0.07	f : 0.05	# : 0.03	! : 0.03	b : 0.03	g : 0.01	
# : 0.16	$ : 0.14	e : 0.14	" : 0.14	c : 0.12	d : 0.05	[ : 0.05	b : 0.03	! : 0.03	a : 0.03	= : 0.03	g : 0.01	f : 0.01	
" : 0.17	# : 0.16	$ : 0.14	e : 0.12	c : 0.08	d : 0.07	! : 0.05	b : 0.03	= : 0.03	[ : 0.03	a : 0.03	g : 0.01	f : 0.01	
# : 0.16	! : 0.14	$ : 0.14	" : 0.14	e : 0.12	[ : 0.10	c : 0.03	a : 0.03	= : 0.03	g : 0.01	f : 0.01	d : 0.01	b : 0.01	
! : 0.17	d : 0.16	$ : 0.12	e : 0.12	# : 0.12	[ : 0.08	c : 0.08	" : 0.05	a : 0.01	b : 0.01	= : 0.01	
d : 0.49	c : 0.17	e : 0.14	! : 0.07	[ : 0.03	b : 0.01	$ : 0.01	" : 0.01	= : 0.01	
d : 0.51	c : 0.26	e : 0.14	b : 0.01	a : 0.01	[ : 0.01	= : 0.01	
d : 0.51	c : 0.17	e : 0.12	[ : 0.05	q : 0.03	o : 0.01	r : 0.01	b : 0.01	a : 0.01	= : 0.01	
d : 0.37	o : 0.23	c : 0.12	e : 0.07	n : 0.05	b : 0.03	q : 0.03	r : 0.01	a : 0.01	= : 0.01	[ : 0.01	
n : 0.32	o : 0.30	m : 0.12	l : 0.07	c : 0.03	q : 0.03	d : 0.03	r : 0.01	b : 0.01	e : 0.01	a : 0.01	
n : 0.33	o : 0.32	l : 0.12	m : 0.12	c : 0.03	q : 0.03	r : 0.01	
n : 0.33	o : 0.32	l : 0.16	m : 0.12	q : 0.03	r : 0.01	
n : 0.33	o : 0.32	m : 0.12	l : 0.08	q : 0.03	d : 0.03	r : 0.01	e : 0.01	b : 0.01	
o : 0.30	n : 0.28	d : 0.19	e : 0.07	b : 0.03	l : 0.03	q : 0.03	r : 0.01	a : 0.01	
d : 0.46	c : 0.19	e : 0.12	o : 0.08	q : 0.03	b : 0.01	r : 0.01	] : 0.01	= : 0.01	n : 0.01	
d : 0.55	c : 0.24	e : 0.12	r : 0.01	o : 0.01	= : 0.01	a : 0.01	
d : 0.51	c : 0.26	e : 0.12	b : 0.01	4 : 0.01	5 : 0.01	= : 0.01	] : 0.01	
d : 0.35	c : 0.12	4 : 0.12	2 : 0.10	e : 0.10	] : 0.05	3 : 0.03	a : 0.01	b : 0.01	6 : 0.01	5 : 0.01	= : 0.01	
3 : 0.24	4 : 0.19	2 : 0.17	d : 0.08	c : 0.08	] : 0.05	e : 0.05	6 : 0.01	b : 0.01	a : 0.01	5 : 0.01	= : 0.01	
3 : 0.26	4 : 0.19	2 : 0.14	a : 0.10	c : 0.10	b : 0.05	] : 0.03	f : 0.01	6 : 0.01	5 : 0.01	= : 0.01	g : 0.01	
3 : 0.24	4 : 0.17	] : 0.14	2 : 0.08	c : 0.08	d : 0.05	e : 0.05	= : 0.03	b : 0.03	f : 0.01	6 : 0.01	5 : 0.01	g : 0.01	
c : 0.28	e : 0.19	d : 0.10	= : 0.08	4 : 0.07	f : 0.05	] : 0.05	g : 0.03	3 : 0.03	h : 0.01	6 : 0.01	2 : 0.01	a : 0.01	
c : 0.24	e : 0.21	d : 0.10	= : 0.10	g : 0.08	f : 0.07	] : 0.05	b : 0.05	h : 0.01	6 : 0.01	3 : 0.01	
e : 0.24	c : 0.23	d : 0.12	= : 0.10	g : 0.08	f : 0.07	b : 0.07	h : 0.03	] : 0.01	
e : 0.26	3 : 0.12	= : 0.12	f : 0.10	g : 0.08	] : 0.07	d : 0.07	2 : 0.03	b : 0.03	c : 0.03	h : 0.03	
e : 0.24	3 : 0.17	= : 0.12	g : 0.08	f : 0.08	2 : 0.05	] : 0.05	d : 0.05	b : 0.03	c : 0.03	h : 0.03	
3 : 0.21	= : 0.12	e : 0.12	2 : 0.10	f : 0.10	g : 0.08	c : 0.05	] : 0.05	d : 0.05	h : 0.03	5 : 0.01	b : 0.01	
= : 0.14	g : 0.12	e : 0.12	c : 0.10	2 : 0.10	3 : 0.08	b : 0.07	f : 0.07	] : 0.05	d : 0.05	h : 0.03	5 : 0.01	
c : 0.17	b : 0.14	= : 0.14	g : 0.12	d : 0.08	e : 0.08	3 : 0.07	f : 0.07	h : 0.03	2 : 0.01	5 : 0.01	] : 0.01	
= : 0.14	c : 0.14	g : 0.10	] : 0.10	e : 0.10	f : 0.10	b : 0.08	d : 0.05	5 : 0.05	3 : 0.03	h : 0.01	: : 0.01	G : 0.01	

#score	798.2360992887952
#seq	56
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_transcript_m1_run2.txt

#BEAR
[ddddtttttttttttddddddd	chr16:84690861-84691126(+)$1	265	104	127	21.7577
=====yyyyyyyyyyyyyyyy==	chr2:47643342-47643575(+)$1	233	7	30	20.1992
ggggguuuuuuuuuuuugggggg	chr12:49522201-49522438(-)$1	237	179	202	23.7512
iiiiiitttttttttttiiiiii	chr10:43889996-43890211(-)$1	215	77	100	22.3519
eeebbvvvvvvvvvvvvvbb]ee	chr12:53856243-53856448(+)$1	205	174	197	22.6446
gg!!bbtttttttttttbb22gg	chr20:40045244-40045526(-)$1	282	35	58	21.4718
d[cccuuuuuuuuuuuucccddd	chr19:49469800-49470023(+)$1	223	34	57	23.2606
ddddvvvvvvvvvvvvvddddff	chr19:46355681-46355894(-)$1	213	65	88	22.7446
ffffbbtttttttttttbb]fff	chr16:2256508-2256754(+)$1	246	202	225	21.5240
dddyyyyyyyyyyyyyyyydddd	chr8:48733195-48733406(-)$1	211	86	109	19.8072
ggggguuuuuuuuuuuugggggg	chrX:48448444-48448689(+)$1	245	23	46	23.7512
!ddddvvvvvvvvvvvvvdddd]	chr3:48198983-48199227(-)$1	244	188	211	23.6452
!dddduuuuuuuuuuuudddd22	chr5:33456153-33456366(+)$1	213	170	193	23.1089
e[cccvvvvvvvvvvvvvccc]e	chr17:79224597-79224863(-)$1	266	135	158	23.7306
"cccyyyyyyyyyyyyyyyyccc	chr9:127911966-127912230(-)$1	264	32	55	20.0955
!!cccvvvvvvvvvvvvvccc22	chr12:57108305-57108530(-)$1	225	121	144	23.4252
:dddduuuuuuuuuuuudddddd	chr19:56156006-56156272(+)$1	266	88	111	22.0971
gggggvvvvvvvvvvvvvggggg	chr1:160268895-160269108(-)$1	213	83	106	23.9847
[ddddvvvvvvvvvvvvvdddd3	chr3:193412413-193412691(+)$1	278	68	91	23.6591
ccc[bbtttttttttttbb]ccc	chr10:17271316-17271600(+)$1	284	85	108	21.6496
beeeeettttttttttteeeee]	chr20:57613546-57613789(-)$1	243	208	231	22.2641
[dddduuuuuuuuuuuudddd]c	chr17:79801093-79801310(-)$1	217	97	120	23.6280
gggggwwwwwwwwwwwwwwgggg	chr12:64825217-64825466(+)$1	249	88	111	22.4564
ggggguuuuuuuuuuuugggggg	chr1:28880051-28880318(+)$1	267	178	201	23.7512
eeeeeuuuuuuuuuuuueeeeec	chr19:1619220-1619436(-)$1	216	67	90	23.4677
dddwwwwwwwwwwwwwwddddgg	chr5:139864613-139864825(+)$1	212	66	89	21.3578
ccddddtttttttttttdddd::	chr20:44052876-44053085(+)$1	209	113	136	20.3044
dddwwwwwwwwwwwwwwddddhh	chr7:137561399-137561685(-)$1	286	103	126	20.9375
f[cccuuuuuuuuuuuuccc]ff	chrX:134947867-134948116(-)$1	249	28	51	23.5540
[dddduuuuuuuuuuuudddd]c	chr15:44120353-44120605(+)$1	252	186	209	23.6280
fffffvvvvvvvvvvvvvfffff	chr1:212276564-212276789(+)$1	225	177	200	23.1075
ggggggtttttttttttgggggg	chr1:223962925-223963138(+)$1	213	67	90	22.6572
eeeewwwwwwwwwwwwwweeeee	chr1:55349209-55349433(-)$1	224	64	87	22.0921
[eeeeettttttttttteeeeed	chr11:94532579-94532854(+)$1	275	131	154	22.5449
fffffuuuuuuuuuuuuffffff	chr1:110091331-110091540(+)$1	209	98	121	22.8541
eeeeevvvvvvvvvvvvveeeee	chr12:102122625-102122873(+)$1	248	196	219	23.5897
fffffvvvvvvvvvvvvvfffff	chr13:37569547-37569832(-)$1	285	112	135	23.1075
gggggvvvvvvvvvvvvvggggg	chr10:17756745-17756998(+)$1	253	53	76	23.9847
c[cccvvvvvvvvvvvvvccccc	chr15:75705186-75705485(-)$1	299	127	150	23.6737
eeeeeuuuuuuuuuuuueeeee2	chr10:43883273-43883484(-)$1	211	129	152	23.2995
[ddddvvvvvvvvvvvvvdddd]	chr15:72491462-72491683(-)$1	221	97	120	23.6897
fffffuuuuuuuuuuuuffffff	chr15:52155023-52155267(+)$1	244	24	47	22.8541
:ddddvvvvvvvvvvvvvdddd:	chr16:84797596-84797813(+)$1	217	111	134	21.4587
geeeeettttttttttteeeee:	chr16:2814865-2815084(+)$1	219	155	178	21.6362
eeeeevvvvvvvvvvvvveeeee	chr6:150064681-150064952(-)$1	271	27	50	23.5897
fffffuuuuuuuuuuuuffffff	chr17:73143620-73143841(-)$1	221	51	74	22.8541
g[cccvvvvvvvvvvvvvccc]g	chr3:38049499-38049705(-)$1	206	125	148	23.9734
eeeeeuuuuuuuuuuuueeeeei	chrX:118603629-118603835(+)$1	206	157	180	23.4931
fffffuuuuuuuuuuuuffffff	chr7:155089893-155090124(+)$1	231	29	52	22.8541
eeewwwwwwwwwwwwwweeeee3	chrX:151909115-151909353(+)$1	238	26	49	21.4460
e[cccuuuuuuuuuuuuccc]ee	chr10:74234882-74235115(-)$1	233	18	41	23.5354
gggggvvvvvvvvvvvvvggggg	chr22:21305691-21305929(+)$1	238	59	82	23.9847
eeeeeuuuuuuuuuuuueeeeeC	chr16:30094655-30094875(+)$1	220	186	209	22.3162
!ddddyyyyyyyyyyyyyyyydd	chr10:27411697-27411945(-)$1	248	139	162	19.8388
dd[bbwwwwwwwwwwwwwwbb]d	chr2:206988555-206988819(-)$1	264	104	127	20.7725
=====uuuuuuuuuuuu======	chr12:120899862-120900065(-)$1	203	159	182	23.7290
fffffftttttttttttffffff	chr1:117634340-117634651(+)$1	311	4	27	21.8697
!eeeeettttttttttteeeee2	chr17:39847440-39847666(+)$1	226	9	32	22.4723
gg[bbuuuuuuuuuuuubbgggg	chr6:20492460-20492715(+)$1	255	147	170	22.9634
hhhhbbtttttttttttbb]hhh	chr12:54744268-54744504(+)$1	236	38	61	20.8146
hhhhhuuuuuuuuuuuuhhhhhh	chr10:24874365-24874622(-)$1	257	112	135	21.5842
f[ddddtttttttttttdddd]f	chr19:18285805-18286113(+)$1	308	204	227	22.5151
gggggvvvvvvvvvvvvvggggg	chr17:80012739-80012951(+)$1	212	11	34	23.9847
fffffvvvvvvvvvvvvvfffff	chr3:139079822-139080023(-)$1	201	146	169	23.1075
ggggguuuuuuuuuuuugggggg	chr8:29931377-29931644(-)$1	267	54	77	23.7512
bbddddtttttttttttdddd]b	chr17:56423085-56423333(-)$1	248	140	163	21.5801
gggggwwwwwwwwwwwwwwgggg	chr20:5526083-5526413(-)$1	330	5	28	22.4564
[a[ccctttttttttttcccaff	chr1:220363617-220363831(-)$1	214	74	97	22.6360
[ddddtttttttttttdddd]bb	chr3:195776273-195776488(-)$1	215	7	30	21.3465

#otherMatches

#Seq PSSM
CUGCAGAACGUCUCCAUGCAGAA	chr16:84690861-84691126(+)$1	265	104	127	21.7577
GUUAUUGUUCCUCUGUUUUUCAU	chr2:47643342-47643575(+)$1	233	7	30	20.1992
AAAGCCUACCAUGAACAGCUUUC	chr12:49522201-49522438(-)$1	237	179	202	23.7512
CAUUUCAUUACCAUCCAGAAGUG	chr10:43889996-43890211(-)$1	215	77	100	22.3519
CAUCACACCAAGCCACUCUGCAU	chr12:53856243-53856448(+)$1	205	174	197	22.6446
UUUUGUGAAUUUAGGUAACUCGA	chr20:40045244-40045526(-)$1	282	35	58	21.4718
CUCAGCUCUGUGACUUCCUGGAG	chr19:49469800-49470023(+)$1	223	34	57	23.2606
GGGUAUUCCUCCUCCCCACCCCC	chr19:46355681-46355894(-)$1	213	65	88	22.7446
GAGACCguuuuagguuggguucu	chr16:2256508-2256754(+)$1	246	202	225	21.5240
CCAAAUAUUACAUUCAAAAUGGC	chr8:48733195-48733406(-)$1	211	86	109	19.8072
ccaccuccugagguucugguggg	chrX:48448444-48448689(+)$1	245	23	46	23.7512
CAGCCUCCUUACCAUCACGGCUU	chr3:48198983-48199227(-)$1	244	188	211	23.6452
AUACACAAAGUAAGUAAUGUAAC	chr5:33456153-33456366(+)$1	213	170	193	23.1089
AAAGCUCCUUACGCCUUUGCUCU	chr17:79224597-79224863(-)$1	266	135	158	23.7306
UGUUCAUAUCAACAACUUAAAAC	chr9:127911966-127912230(-)$1	264	32	55	20.0955
CAGGCAACCACACAACAAGCCCA	chr12:57108305-57108530(-)$1	225	121	144	23.4252
ACCUGCUUAUUGACACUCAGGGU	chr19:56156006-56156272(+)$1	266	88	111	22.0971
UACCCAUCUAUGUCACACGGGUG	chr1:160268895-160269108(-)$1	213	83	106	23.9847
CCUUUCUAAACAUACAAUAAAGU	chr3:193412413-193412691(+)$1	278	68	91	23.6591
CAUCGCCACCCUCCGCAGCCAUG	chr10:17271316-17271600(+)$1	284	85	108	21.6496
AAAGUUGCACAGCCACAGACUUC	chr20:57613546-57613789(-)$1	243	208	231	22.2641
UGGCCUCUCUACAGCACGGCCUG	chr17:79801093-79801310(-)$1	217	97	120	23.6280
UUGCUUAUAUAGUCGAACCAGUA	chr12:64825217-64825466(+)$1	249	88	111	22.4564
AUCCGAAACCGCCUCACUGGGUA	chr1:28880051-28880318(+)$1	267	178	201	23.7512
GCUGGCCUCAGGUUUCACCGGCC	chr19:1619220-1619436(-)$1	216	67	90	23.4677
AGAUUGCGAUUUAUUUUUCUUCA	chr5:139864613-139864825(+)$1	212	66	89	21.3578
ACGCCAGAUCCUAACCAUGGCUU	chr20:44052876-44053085(+)$1	209	113	136	20.3044
AAGACCUUCAUCCUCCCCUUCCU	chr7:137561399-137561685(-)$1	286	103	126	20.9375
CAGCAAAGAUGGGAUGAUGCAGA	chrX:134947867-134948116(-)$1	249	28	51	23.5540
UGAUGAAGAUACCACACCAUCCC	chr15:44120353-44120605(+)$1	252	186	209	23.6280
UGUAUAAUUUUAUUUGAAAUACA	chr1:212276564-212276789(+)$1	225	177	200	23.1075
CUGUUGAUUCUACCAAACAACAG	chr1:223962925-223963138(+)$1	213	67	90	22.6572
UGUCGGGAAGUACAAGAAGACAC	chr1:55349209-55349433(-)$1	224	64	87	22.0921
CUGGCCAUUCAGCACCAGGCCAC	chr11:94532579-94532854(+)$1	275	131	154	22.5449
GCGGCCAAAGAAGUGAAGCUGCU	chr1:110091331-110091540(+)$1	209	98	121	22.8541
AGCAAAUAAAAUAUUUCAUUGCU	chr12:102122625-102122873(+)$1	248	196	219	23.5897
CAUUUACAACUGCUACAAAAAUG	chr13:37569547-37569832(-)$1	285	112	135	23.1075
UGGCAGAUACCUGCUAAAUGCCA	chr10:17756745-17756998(+)$1	253	53	76	23.9847
GUGUCCCAGCUAUUCAAAGGCCA	chr15:75705186-75705485(-)$1	299	127	150	23.6737
GACACCCACCCUGACAAGUGUCC	chr10:43883273-43883484(-)$1	211	129	152	23.2995
GGGCUGUUGUUCCAUUGAAGCCG	chr15:72491462-72491683(-)$1	221	97	120	23.6897
AGCAAAAAUUAAGUGACUUGCUG	chr15:52155023-52155267(+)$1	244	24	47	22.8541
CGGCCCCAAAAACCACUCGGUCA	chr16:84797596-84797813(+)$1	217	111	134	21.4587
CGUUCUCCAUCAUCCCCAGAGCU	chr16:2814865-2815084(+)$1	219	155	178	21.6362
GAGUUAAAUAAACAAAUGGACUU	chr6:150064681-150064952(-)$1	271	27	50	23.5897
UUUUCUAUUGUAUUUCUGAAGAA	chr17:73143620-73143841(-)$1	221	51	74	22.8541
GUGGAAGAUUAUGAUGCCUCCUC	chr3:38049499-38049705(-)$1	206	125	148	23.9734
AAGAUAAAUACAAGCAGAUCUUC	chrX:118603629-118603835(+)$1	206	157	180	23.4931
CGCUCUUUGUCUCUUCUGAGUGA	chr7:155089893-155090124(+)$1	231	29	52	22.8541
CCCAAGACAACCCAAAAGGGAAA	chrX:151909115-151909353(+)$1	238	26	49	21.4460
CUUCCUAAUAUUUUUCUGGAUGU	chr10:74234882-74235115(-)$1	233	18	41	23.5354
GUGGUUCAUCCAUCAUCUGCUGC	chr22:21305691-21305929(+)$1	238	59	82	23.9847
CUGAGAUCUUUGACUACCUCAGC	chr16:30094655-30094875(+)$1	220	186	209	22.3162
GGCAGACCAUAAAUCAACUUCUU	chr10:27411697-27411945(-)$1	248	139	162	19.8388
UAAAGGUUAAAUAACAAAACUAU	chr2:206988555-206988819(-)$1	264	104	127	20.7725
GUCUCGGUCUGGGUCAAGGGGCC	chr12:120899862-120900065(-)$1	203	159	182	23.7290
ACAUGGUUAAAGUAGCCCCAUGU	chr1:117634340-117634651(+)$1	311	4	27	21.8697
GUCCUCGGUGAAUCUGAGAGGAG	chr17:39847440-39847666(+)$1	226	9	32	22.4723
UGGACUUGGUACAAAAUGUCGGU	chr6:20492460-20492715(+)$1	255	147	170	22.9634
AAGACCUCACUGUUCCUGGCUCU	chr12:54744268-54744504(+)$1	236	38	61	20.8146
GAAACGAAACAUAGCGAGUUUUU	chr10:24874365-24874622(-)$1	257	112	135	21.5842
UGGUGCCCUACGGAAACGCACAG	chr19:18285805-18286113(+)$1	308	204	227	22.5151
UUGGCUCUGCGCCCCCCCGCCAG	chr17:80012739-80012951(+)$1	212	11	34	23.9847
UUUUUGGAGAGGGAAGUGAAGAA	chr3:139079822-139080023(-)$1	201	146	169	23.1075
UGUUUUCUUGCUGUUUCAGACAG	chr8:29931377-29931644(-)$1	267	54	77	23.7512
CAGAGGCCCUUCUACUCCCUCUU	chr17:56423085-56423333(-)$1	248	140	163	21.5801
CAGAACCUUCCUGCUCACUUUCU	chr20:5526083-5526413(-)$1	330	5	28	22.4564
UGUGAAAACAGUGAACGUUCCCU	chr1:220363617-220363831(-)$1	214	74	97	22.6360
GUUGAGUUACUUCCUAUCAAGCC	chr3:195776273-195776488(-)$1	215	7	30	21.3465

#DB
.((((...........)))))))	chr16:84690861-84691126(+)$1	1	104	127	21.7577
(((((................))	chr2:47643342-47643575(+)$1	1	7	30	20.1992
(((((............))))))	chr12:49522201-49522438(-)$1	1	179	202	23.7512
((((((...........))))))	chr10:43889996-43890211(-)$1	1	77	100	22.3519
(((((.............)).))	chr12:53856243-53856448(+)$1	1	174	197	22.6446
((..((...........))..))	chr20:40045244-40045526(-)$1	1	35	58	21.4718
(.(((............))))))	chr19:49469800-49470023(+)$1	1	34	57	23.2606
((((.............))))))	chr19:46355681-46355894(-)$1	1	65	88	22.7446
((((((...........)).)))	chr16:2256508-2256754(+)$1	1	202	225	21.5240
(((................))))	chr8:48733195-48733406(-)$1	1	86	109	19.8072
(((((............))))))	chrX:48448444-48448689(+)$1	1	23	46	23.7512
.((((.............)))).	chr3:48198983-48199227(-)$1	1	188	211	23.6452
.((((............))))..	chr5:33456153-33456366(+)$1	1	170	193	23.1089
(.(((.............))).)	chr17:79224597-79224863(-)$1	1	135	158	23.7306
.(((................)))	chr9:127911966-127912230(-)$1	1	32	55	20.0955
..(((.............)))..	chr12:57108305-57108530(-)$1	1	121	144	23.4252
.((((............))))((	chr19:56156006-56156272(+)$1	1	88	111	22.0971
(((((.............)))))	chr1:160268895-160269108(-)$1	1	83	106	23.9847
.((((.............)))).	chr3:193412413-193412691(+)$1	1	68	91	23.6591
(((.((...........)).)))	chr10:17271316-17271600(+)$1	1	85	108	21.6496
((((((...........))))).	chr20:57613546-57613789(-)$1	1	208	231	22.2641
.((((............)))).)	chr17:79801093-79801310(-)$1	1	97	120	23.6280
(((((..............))))	chr12:64825217-64825466(+)$1	1	88	111	22.4564
(((((............))))))	chr1:28880051-28880318(+)$1	1	178	201	23.7512
(((((............))))))	chr19:1619220-1619436(-)$1	1	67	90	23.4677
(((..............))))))	chr5:139864613-139864825(+)$1	1	66	89	21.3578
))((((...........))))..	chr20:44052876-44053085(+)$1	1	113	136	20.3044
(((..............))))))	chr7:137561399-137561685(-)$1	1	103	126	20.9375
(.(((............))).))	chrX:134947867-134948116(-)$1	1	28	51	23.5540
.((((............)))).)	chr15:44120353-44120605(+)$1	1	186	209	23.6280
(((((.............)))))	chr1:212276564-212276789(+)$1	1	177	200	23.1075
((((((...........))))))	chr1:223962925-223963138(+)$1	1	67	90	22.6572
((((..............)))))	chr1:55349209-55349433(-)$1	1	64	87	22.0921
.(((((...........))))))	chr11:94532579-94532854(+)$1	1	131	154	22.5449
(((((............))))))	chr1:110091331-110091540(+)$1	1	98	121	22.8541
(((((.............)))))	chr12:102122625-102122873(+)$1	1	196	219	23.5897
(((((.............)))))	chr13:37569547-37569832(-)$1	1	112	135	23.1075
(((((.............)))))	chr10:17756745-17756998(+)$1	1	53	76	23.9847
(.(((.............)))))	chr15:75705186-75705485(-)$1	1	127	150	23.6737
(((((............))))).	chr10:43883273-43883484(-)$1	1	129	152	23.2995
.((((.............)))).	chr15:72491462-72491683(-)$1	1	97	120	23.6897
(((((............))))))	chr15:52155023-52155267(+)$1	1	24	47	22.8541
.((((.............)))).	chr16:84797596-84797813(+)$1	1	111	134	21.4587
)(((((...........))))).	chr16:2814865-2815084(+)$1	1	155	178	21.6362
(((((.............)))))	chr6:150064681-150064952(-)$1	1	27	50	23.5897
(((((............))))))	chr17:73143620-73143841(-)$1	1	51	74	22.8541
(.(((.............))).)	chr3:38049499-38049705(-)$1	1	125	148	23.9734
(((((............))))))	chrX:118603629-118603835(+)$1	1	157	180	23.4931
(((((............))))))	chr7:155089893-155090124(+)$1	1	29	52	22.8541
(((..............))))).	chrX:151909115-151909353(+)$1	1	26	49	21.4460
(.(((............))).))	chr10:74234882-74235115(-)$1	1	18	41	23.5354
(((((.............)))))	chr22:21305691-21305929(+)$1	1	59	82	23.9847
(((((............))))))	chr16:30094655-30094875(+)$1	1	186	209	22.3162
.((((................))	chr10:27411697-27411945(-)$1	1	139	162	19.8388
((.((..............)).)	chr2:206988555-206988819(-)$1	1	104	127	20.7725
(((((............))))))	chr12:120899862-120900065(-)$1	1	159	182	23.7290
((((((...........))))))	chr1:117634340-117634651(+)$1	1	4	27	21.8697
.(((((...........))))).	chr17:39847440-39847666(+)$1	1	9	32	22.4723
((.((............))))))	chr6:20492460-20492715(+)$1	1	147	170	22.9634
((((((...........)).)))	chr12:54744268-54744504(+)$1	1	38	61	20.8146
(((((............))))))	chr10:24874365-24874622(-)$1	1	112	135	21.5842
(.((((...........)))).)	chr19:18285805-18286113(+)$1	1	204	227	22.5151
(((((.............)))))	chr17:80012739-80012951(+)$1	1	11	34	23.9847
(((((.............)))))	chr3:139079822-139080023(-)$1	1	146	169	23.1075
(((((............))))))	chr8:29931377-29931644(-)$1	1	54	77	23.7512
((((((...........)))).)	chr17:56423085-56423333(-)$1	1	140	163	21.5801
(((((..............))))	chr20:5526083-5526413(-)$1	1	5	28	22.4564
.(.(((...........))))))	chr1:220363617-220363831(-)$1	1	74	97	22.6360
.((((...........)))).))	chr3:195776273-195776488(-)$1	1	7	30	21.3465

#PSSM
g : 0.21	e : 0.15	f : 0.15	[ : 0.11	d : 0.08	! : 0.07	c : 0.04	= : 0.02	: : 0.02	b : 0.02	h : 0.02	i : 0.01	" : 0.01	
d : 0.23	g : 0.18	e : 0.18	f : 0.13	[ : 0.10	c : 0.04	= : 0.02	h : 0.02	i : 0.01	! : 0.01	b : 0.01	a : 0.01	
d : 0.26	e : 0.18	g : 0.15	c : 0.13	f : 0.13	[ : 0.04	= : 0.02	h : 0.02	i : 0.01	! : 0.01	
d : 0.21	g : 0.15	e : 0.15	c : 0.13	f : 0.13	b : 0.04	w : 0.04	= : 0.02	h : 0.02	i : 0.01	! : 0.01	y : 0.01	[ : 0.01	
d : 0.20	g : 0.15	e : 0.14	c : 0.11	f : 0.11	b : 0.10	w : 0.05	= : 0.02	y : 0.02	i : 0.01	v : 0.01	h : 0.01	
u : 0.31	v : 0.27	w : 0.10	y : 0.05	b : 0.05	e : 0.05	d : 0.04	t : 0.02	i : 0.01	g : 0.01	f : 0.01	c : 0.01	
u : 0.31	v : 0.27	t : 0.24	w : 0.10	y : 0.05	
u : 0.31	v : 0.27	t : 0.24	w : 0.10	y : 0.05	
u : 0.31	v : 0.27	t : 0.24	w : 0.10	y : 0.05	
u : 0.31	v : 0.27	t : 0.24	w : 0.10	y : 0.05	
u : 0.31	v : 0.27	t : 0.24	w : 0.10	y : 0.05	
u : 0.31	v : 0.27	t : 0.24	w : 0.10	y : 0.05	
u : 0.31	v : 0.27	t : 0.24	w : 0.10	y : 0.05	
u : 0.31	v : 0.27	t : 0.24	w : 0.10	y : 0.05	
u : 0.31	v : 0.27	t : 0.24	w : 0.10	y : 0.05	
u : 0.31	v : 0.27	t : 0.24	w : 0.10	y : 0.05	
u : 0.31	v : 0.27	t : 0.21	w : 0.10	y : 0.05	d : 0.02	
v : 0.26	d : 0.17	e : 0.13	g : 0.07	b : 0.07	f : 0.07	y : 0.05	c : 0.05	w : 0.05	i : 0.01	= : 0.01	h : 0.01	
d : 0.23	e : 0.17	g : 0.13	c : 0.11	f : 0.11	b : 0.08	y : 0.05	w : 0.04	i : 0.01	= : 0.01	h : 0.01	
d : 0.24	g : 0.17	e : 0.17	c : 0.11	f : 0.11	y : 0.04	] : 0.04	b : 0.02	i : 0.01	2 : 0.01	= : 0.01	h : 0.01	
d : 0.24	g : 0.17	e : 0.17	f : 0.13	c : 0.08	] : 0.05	y : 0.02	h : 0.02	i : 0.01	2 : 0.01	b : 0.01	= : 0.01	a : 0.01	
g : 0.20	e : 0.20	f : 0.17	d : 0.13	] : 0.10	c : 0.04	h : 0.04	= : 0.02	2 : 0.02	i : 0.01	: : 0.01	b : 0.01	
g : 0.21	f : 0.18	d : 0.10	e : 0.08	c : 0.08	2 : 0.05	] : 0.04	: : 0.04	h : 0.04	= : 0.02	i : 0.02	3 : 0.02	b : 0.02	C : 0.01	

#score	1558.0303614477775
#seq	69
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_CDS_m2_run2.txt

#BEAR
:ccc"""cccooooooccc333ccc:::	chr11:61079177-61079481(-)$1	304	214	242	9.9169
"ccc!!ddddoooooodddd333cccff	chr2:230695342-230695697(-)$1	355	34	62	15.8151
ee"""eeeeennnnneeeee333eeeee	chr6:31937062-31937312(+)$1	250	20	48	9.4719
"""bb[cccooooooccc]bb22dddd4	chr10:104113251-104113521(+)$1	270	166	194	9.7771
!!dddd[cccooooooccc22ddddhhh	chr14:32546485-32546788(+)$1	303	161	189	9.8955
eebb!!eeeeellleeeee4444bb]ee	chr17:72768099-72768410(-)$1	311	94	122	8.7889
Accc!!ddddoooooodddd22ccc:ee	chr14:21484914-21485174(-)$1	260	17	45	13.4903
##ccc[ddddoooooodddd]ccc22a]	chr1:39888342-39888594(+)$1	252	72	100	14.0626
bb####ddddoooooodddd333bb:::	chr1:247050401-247050695(-)$1	294	24	52	12.4044
==ccc[ddddoooooodddd22ccc]==	chr2:207634698-207634970(+)$1	272	28	56	14.8705
[a!!ddddqqqqqqqqdddd4444a]ee	chr17:75494563-75494796(+)$1	233	169	197	9.1208
a[eeeee[ddddmmmmdddd22eeeee]	chr3:184041060-184041305(+)$1	245	5	33	9.1370
c[ccc[ddddnnnnndddd]ccc]ccc]	chr1:249151582-249151903(-)$1	321	281	309	10.0634
dddd!!ddddoooooodddd]dddd:::	chr2:178083872-178084105(+)$1	233	10	38	10.8444
eeeea[ddddoooooodddd]a]eeeee	chr2:101638026-101638301(-)$1	275	142	170	12.8262
dd[bbaddddoooooodddd22a]bb33	chr3:58123952-58124189(+)$1	237	54	82	13.3995
!ccc"""eeeeemmmmeeeee22ccc22	chr14:21963401-21963758(+)$1	357	267	295	9.0772
[bb"""eeeeennnnneeeee4444bb]	chr1:28176899-28177192(+)$1	293	125	153	9.5216
c[bb[eeeeeooooooeeeeebb]cccf	chr5:111071014-111071297(-)$1	283	162	190	10.5600
===ddddrrrrrrrrrdddd]=======	chrY:15026437-15026739(+)$1	302	129	157	9.8088
bb"""eeeeeooooooeeeee333bbee	chr11:72423483-72423761(-)$1	278	68	96	12.0111
iiii[ddddpppppppdddd333iiiii	chr12:62949776-62950083(+)$1	307	241	269	9.6464
"ccc"""cccbblllbb]ccc333ccc3	chr16:3117320-3117594(+)$1	274	193	221	9.2739
c!!bb[ddddoooooodddd]bb4444c	chr3:48457752-48458036(-)$1	284	247	275	13.4176
[bb!!ccccccooooooccc]ccc22bb	chr19:798426-798682(+)$1	256	70	98	9.8773
#ccc!!ccclllccc22ccc333ccc33	chr16:75270524-75270831(-)$1	307	61	89	8.8767
!!ddddddddoooooodddd00000000	chr3:58106866-58107093(+)$1	227	150	178	10.8617
ccc!!eeeeeooooooeeeee22cccdd	chr15:85191612-85191886(-)$1	274	118	146	12.1081
e[a$$$$$ddddmmmmdddd333a]eee	chr6:33179168-33179451(+)$1	283	89	117	9.9947
!!eeeee[ddddmmmmdddd333eeeee	chr1:21102933-21103206(-)$1	273	24	52	10.2533
[a"""ddddbbccclllccc333bb]dd	chr7:77166709-77166969(+)$1	260	159	187	8.8862
=============lll============	chr11:62293136-62293424(-)$1	288	163	191	8.8407
dd####ddddoooooodddd]ddddddd	chr20:37153454-37153708(+)$1	254	153	181	13.0991
::ccc[ddddoooooodddd22cccCCC	chr20:40079487-40079739(-)$1	252	137	165	10.0415
==========rrrrrrrrr=========	chr1:31465081-31465346(-)$1	265	232	260	8.3549
""dddd!!ddddmmmmdddd333dddd4	chr1:46035407-46035687(+)$1	280	239	267	10.7950
[ddddcccddddmmmmdddd]ccc4444	chr16:4721241-4721505(+)$1	264	225	253	9.6588
dddd[bb[cccooooooccc22bb]ddd	chrM:14201-14443(-)$1	242	76	104	9.2848
Idddd[ddddoooooodddddddd:ccc	chr2:230693737-230694072(-)$1	335	284	312	10.3692
[ccc!!ddddrrrrrrrrrdddd]ccc]	chr16:11990430-11990691(-)$1	261	125	153	9.7511
====dddd[bblllbbdddd333=====	chr17:80397923-80398200(+)$1	277	10	38	10.2768
fccc[eeeeeooooooeeeee]ccc]ff	chr14:38265947-38266292(+)$1	345	291	319	11.3332
!!ccc[ddddooooooddddccc4444h	chr6:33179068-33179348(+)$1	280	11	39	13.9279
dd[cccddddoooooodddd4444ccc]	chr6:170892649-170892910(-)$1	261	229	257	14.4593
""bb[ddddpppppppdddd333bb333	chr6:7574859-7575088(+)$1	229	64	92	9.9283
ggggggddddoooooodddd]ggggggg	chr16:70601278-70601523(+)$1	245	177	205	12.7628
!!bb"""ddddmmmmdddd22bbdddda	chr14:23528320-23528582(-)$1	262	184	212	9.0913

#otherMatches

#Seq PSSM
GCUAGCACCCAGGUAAGGGCAGUGGACA	chr11:61079177-61079481(-)$1	304	214	242	9.9169
UUGCCUUUAUUCAAUUGUAGUCCGCAAA	chr2:230695342-230695697(-)$1	355	34	62	15.8151
CAAGCGGAUUGGUGAGGUCCAGGUGGCU	chr6:31937062-31937312(+)$1	250	20	48	9.4719
UCUGAGAGCUGAUCUGCUGUCCCUCAUC	chr10:104113251-104113521(+)$1	270	166	194	9.7771
ACCUUGCGGACCCCGCUCCUCCAAGCCU	chr14:32546485-32546788(+)$1	303	161	189	9.8955
CCCAGGUGAACUUUGUUCAGGUGUGAGG	chr17:72768099-72768410(-)$1	311	94	122	8.7889
GGGCAACAGGAAGGGGCCUGGGGCCGUU	chr14:21484914-21485174(-)$1	260	17	45	13.4903
UUGCACAGCUACAGGAAGCUUUGUUGCA	chr1:39888342-39888594(+)$1	252	72	100	14.0626
GCUUUUUAAAAGACCAUUUAUUUGCUAC	chr1:247050401-247050695(-)$1	294	24	52	12.4044
CAGUACAUCAGUUCAGUGGUUUUGCUUG	chr2:207634698-207634970(+)$1	272	28	56	14.8705
AGAUGUAGACGCCACCCUGCCCACCCCC	chr17:75494563-75494796(+)$1	233	169	197	9.1208
AGUGGGAGUGGAUGAUUCCGUGUCUCAG	chr3:184041060-184041305(+)$1	245	5	33	9.1370
CUGGUGCCCGGGCUUCGGGGGCCUGGCG	chr1:249151582-249151903(-)$1	321	281	309	10.0634
UGGUGGUAAGUACUUUCUUAAAUCAAUU	chr2:178083872-178084105(+)$1	233	10	38	10.8444
GCUUCAUAUCCCUCCAGGUAAGAAAGUC	chr2:101638026-101638301(-)$1	275	142	170	12.8262
AGGUCCUGGAAUCGCCUCCACUGUGAAA	chr3:58123952-58124189(+)$1	237	54	82	13.3995
UGCUGUAUCUGGUCUACUAGAAAAGCUC	chr14:21963401-21963758(+)$1	357	267	295	9.0772
AACUAGGGAGAAAAACUUUCCAUGUGUG	chr1:28176899-28177192(+)$1	293	125	153	9.5216
CUUCCUAAGGUAAGAUCCUUAGAUGCCA	chr5:111071014-111071297(-)$1	283	162	190	10.5600
GGUUUUGUUAUAAAAUCAGACAUUUUUG	chrY:15026437-15026739(+)$1	302	129	157	9.8088
CAGAGGGGGCGUGGCAGCCCCGGGUGGG	chr11:72423483-72423761(-)$1	278	68	96	12.0111
agaaauuuggaaaauacagaCGAUUCUU	chr12:62949776-62950083(+)$1	307	241	269	9.6464
AGGAUCCGGCCCUUUGGUGCCAACUCUG	chr16:3117320-3117594(+)$1	274	193	221	9.2739
GACGUGGUGUCUCAGAACACGACUUUGC	chr3:48457752-48458036(-)$1	284	247	275	13.4176
AGGCGCAGCCCUAGAGUGGGUCUGGACC	chr19:798426-798682(+)$1	256	70	98	9.8773
UGCCAGGGCAAUGCCAGGGCCAGGCUGA	chr16:75270524-75270831(-)$1	307	61	89	8.8767
AGGAGGCCAGGGGAAGCUGGACGUGACA	chr3:58106866-58107093(+)$1	227	150	178	10.8617
GGUAUGGUCAAUUUUGUGAUCCAGCCAU	chr15:85191612-85191886(-)$1	274	118	146	12.1081
GAGAAAUUGAGCUCGUGUUCCGGCCCCA	chr6:33179168-33179451(+)$1	283	89	117	9.9947
ACCUGCUACUUCGAGUGAGGCAGAGCAG	chr1:21102933-21103206(-)$1	273	24	52	10.2533
GCAAGUGGAGAUCCUGAGGAAAUUCAUC	chr7:77166709-77166969(+)$1	260	159	187	8.8862
GGACAUUGAUGUCCCAGAUGUUAAUGUU	chr11:62293136-62293424(-)$1	288	163	191	8.8407
UAUUAUAUCAACUGUCUGAUUUGGCCUG	chr20:37153454-37153708(+)$1	254	153	181	13.0991
AAACAGCACUGCAACAAGUGAGUGUCCC	chr20:40079487-40079739(-)$1	252	137	165	10.0415
UGUGAACCUGUUAGUGAUGUAGGUUUAC	chr1:31465081-31465346(-)$1	265	232	260	8.3549
UCCCUUCCAGCUCUGCAGCUAAUGAGGU	chr1:46035407-46035687(+)$1	280	239	267	10.7950
AUCUGGGUGAGGUUUCCCUCUGCCAUUA	chr16:4721241-4721505(+)$1	264	225	253	9.6588
UGCUGUGGGUGAAAGAGUAUGAUGGGGU	chrM:14201-14443(-)$1	242	76	104	9.2848
UAAGGCUGUGUACAAUCACACCUUAAAU	chr2:230693737-230694072(-)$1	335	284	312	10.3692
GGGUGGUUCCUUGGGAGAUGGAAGGCCG	chr16:11990430-11990691(-)$1	261	125	153	9.7511
GGCUCAGGCGCCCGGCCCUGGAAGGCCC	chr17:80397923-80398200(+)$1	277	10	38	10.2768
AAAAUUAAGUCAUACuauuuauuuucug	chr14:38265947-38266292(+)$1	345	291	319	11.3332
AAGCGACCCCGUGGAGGGGGCGCAGGGG	chr6:33179068-33179348(+)$1	280	11	39	13.9279
CUCCAGAUGCCACAAAGCAUAUUACUGC	chr6:170892649-170892910(-)$1	261	229	257	14.4593
CUCCAAACAGAAGACAUGUUAAAGGUUU	chr6:7574859-7575088(+)$1	229	64	92	9.9283
UGGUGCUGAGAUCUAGCUCAUGUGUCAA	chr16:70601278-70601523(+)$1	245	177	205	12.7628
AGUCGGAGCACACCUGUGCGGGACCGGG	chr14:23528320-23528582(-)$1	262	184	212	9.0913

#DB
.(((...(((......)))...)))...	chr11:61079177-61079481(-)$1	1	214	242	9.9169
.(((..((((......))))...)))))	chr2:230695342-230695697(-)$1	1	34	62	15.8151
((...(((((.....)))))...)))))	chr6:31937062-31937312(+)$1	1	20	48	9.4719
...((.(((......))).))..)))).	chr10:104113251-104113521(+)$1	1	166	194	9.7771
..((((.(((......)))..)))))))	chr14:32546485-32546788(+)$1	1	161	189	9.8955
((((..(((((...)))))....)).))	chr17:72768099-72768410(-)$1	1	94	122	8.7889
((((..((((......))))..))).((	chr14:21484914-21485174(-)$1	1	17	45	13.4903
..(((.((((......)))).)))..).	chr1:39888342-39888594(+)$1	1	72	100	14.0626
((....((((......))))...))...	chr1:247050401-247050695(-)$1	1	24	52	12.4044
(((((.((((......))))..))).))	chr2:207634698-207634970(+)$1	1	28	56	14.8705
.(..((((........))))....).))	chr17:75494563-75494796(+)$1	1	169	197	9.1208
(.(((((.((((....))))..))))).	chr3:184041060-184041305(+)$1	1	5	33	9.1370
(.(((.((((.....)))).))).))).	chr1:249151582-249151903(-)$1	1	281	309	10.0634
((((..((((......)))).))))...	chr2:178083872-178084105(+)$1	1	10	38	10.8444
(((((.((((......)))).).)))))	chr2:101638026-101638301(-)$1	1	142	170	12.8262
((.(((((((......))))..).))..	chr3:58123952-58124189(+)$1	1	54	82	13.3995
.(((...(((((....)))))..)))..	chr14:21963401-21963758(+)$1	1	267	295	9.0772
.((...(((((.....)))))....)).	chr1:28176899-28177192(+)$1	1	125	153	9.5216
(.((.(((((......))))))).)))(	chr5:111071014-111071297(-)$1	1	162	190	10.5600
(((((((.........)))).)))))))	chrY:15026437-15026739(+)$1	1	129	157	9.8088
((...(((((......)))))...))((	chr11:72423483-72423761(-)$1	1	68	96	12.0111
((((.((((.......))))...)))))	chr12:62949776-62950083(+)$1	1	241	269	9.6464
.(((...(((((...)).)))...))).	chr16:3117320-3117594(+)$1	1	193	221	9.2739
(..((.((((......)))).))....)	chr3:48457752-48458036(-)$1	1	247	275	13.4176
.((..((((((......))).)))..))	chr19:798426-798682(+)$1	1	70	98	9.8773
.(((..(((...)))..)))...)))..	chr16:75270524-75270831(-)$1	1	61	89	8.8767
..((((((((......))))........	chr3:58106866-58107093(+)$1	1	150	178	10.8617
(((..(((((......)))))..)))((	chr15:85191612-85191886(-)$1	1	118	146	12.1081
(.(.....((((....))))...).)))	chr6:33179168-33179451(+)$1	1	89	117	9.9947
..(((((.((((....))))...)))))	chr1:21102933-21103206(-)$1	1	24	52	10.2533
.(...(((((((((...)))...)).))	chr7:77166709-77166969(+)$1	1	159	187	8.8862
(((((((((((((...))))))))))))	chr11:62293136-62293424(-)$1	1	163	191	8.8407
((....((((......)))).))))(((	chr20:37153454-37153708(+)$1	1	153	181	13.0991
..(((.((((......))))..))))))	chr20:40079487-40079739(-)$1	1	137	165	10.0415
((((((((((.........)))))))))	chr1:31465081-31465346(-)$1	1	232	260	8.3549
..((((..((((....))))...)))).	chr1:46035407-46035687(+)$1	1	239	267	10.7950
.(((((((((((....)))).)))....	chr16:4721241-4721505(+)$1	1	225	253	9.6588
((((.((.(((......)))..)).)))	chrM:14201-14443(-)$1	1	76	104	9.2848
)((((.((((......)))))))).(((	chr2:230693737-230694072(-)$1	1	284	312	10.3692
.(((..((((.........)))).))).	chr16:11990430-11990691(-)$1	1	125	153	9.7511
((((((((.((...))))))...)))))	chr17:80397923-80398200(+)$1	1	10	38	10.2768
((((.(((((......))))).))).))	chr14:38265947-38266292(+)$1	1	291	319	11.3332
..(((.((((......)))))))....)	chr6:33179068-33179348(+)$1	1	11	39	13.9279
((.(((((((......))))....))).	chr6:170892649-170892910(-)$1	1	229	257	14.4593
..((.((((.......))))...))...	chr6:7574859-7575088(+)$1	1	64	92	9.9283
((((((((((......)))).)))))))	chr16:70601278-70601523(+)$1	1	177	205	12.7628
..((...((((....))))..)))))))	chr14:23528320-23528582(-)$1	1	184	212	9.0913

#PSSM
! : 0.12	[ : 0.12	" : 0.10	= : 0.10	d : 0.10	e : 0.08	c : 0.08	: : 0.04	# : 0.04	b : 0.04	A : 0.02	a : 0.02	i : 0.02	I : 0.02	f : 0.02	g : 0.02	
c : 0.19	d : 0.14	! : 0.12	= : 0.10	b : 0.08	[ : 0.08	e : 0.06	" : 0.06	a : 0.04	# : 0.02	i : 0.02	: : 0.02	g : 0.02	
c : 0.29	d : 0.14	b : 0.12	" : 0.08	= : 0.08	e : 0.06	# : 0.04	! : 0.04	[ : 0.04	i : 0.02	a : 0.02	g : 0.02	
c : 0.29	d : 0.17	b : 0.14	" : 0.08	! : 0.06	e : 0.06	= : 0.06	# : 0.04	i : 0.02	$ : 0.02	g : 0.02	
" : 0.17	! : 0.17	d : 0.17	c : 0.12	[ : 0.10	b : 0.06	# : 0.04	e : 0.04	= : 0.04	a : 0.02	$ : 0.02	g : 0.02	
[ : 0.19	d : 0.19	e : 0.14	! : 0.12	" : 0.10	c : 0.06	# : 0.04	= : 0.04	a : 0.02	$ : 0.02	b : 0.02	g : 0.02	
d : 0.51	e : 0.19	" : 0.08	c : 0.08	= : 0.04	[ : 0.02	$ : 0.02	! : 0.02	b : 0.02	
d : 0.51	e : 0.17	c : 0.14	[ : 0.06	= : 0.04	r : 0.02	$ : 0.02	! : 0.02	
d : 0.57	e : 0.17	c : 0.14	= : 0.04	q : 0.02	r : 0.02	[ : 0.02	
d : 0.51	e : 0.17	c : 0.10	p : 0.04	b : 0.04	= : 0.04	o : 0.02	q : 0.02	r : 0.02	l : 0.02	
o : 0.48	d : 0.12	e : 0.06	r : 0.06	b : 0.06	n : 0.04	p : 0.04	c : 0.04	q : 0.02	l : 0.02	= : 0.02	
o : 0.53	d : 0.10	n : 0.06	l : 0.06	r : 0.06	p : 0.04	q : 0.02	e : 0.02	b : 0.02	c : 0.02	= : 0.02	m : 0.02	
o : 0.53	m : 0.14	n : 0.06	l : 0.06	r : 0.06	p : 0.04	c : 0.04	q : 0.02	= : 0.02	
o : 0.53	m : 0.14	l : 0.08	n : 0.06	r : 0.06	p : 0.04	c : 0.04	q : 0.02	
o : 0.53	m : 0.14	n : 0.06	r : 0.06	l : 0.06	p : 0.04	e : 0.02	q : 0.02	c : 0.02	b : 0.02	
o : 0.51	m : 0.12	r : 0.06	e : 0.04	d : 0.04	p : 0.04	b : 0.04	l : 0.04	c : 0.02	q : 0.02	n : 0.02	2 : 0.02	
d : 0.59	e : 0.17	c : 0.06	o : 0.04	r : 0.04	b : 0.02	2 : 0.02	l : 0.02	= : 0.02	
d : 0.59	e : 0.17	c : 0.14	r : 0.04	] : 0.02	= : 0.02	
d : 0.59	e : 0.17	c : 0.14	r : 0.04	] : 0.02	= : 0.02	
d : 0.57	e : 0.14	c : 0.10	2 : 0.04	= : 0.04	3 : 0.02	b : 0.02	4 : 0.02	] : 0.02	
3 : 0.25	] : 0.19	2 : 0.17	e : 0.12	4 : 0.06	c : 0.06	= : 0.04	d : 0.04	b : 0.02	0 : 0.02	
3 : 0.29	2 : 0.19	d : 0.10	c : 0.10	4 : 0.08	b : 0.06	= : 0.06	a : 0.02	0 : 0.02	] : 0.02	g : 0.02	
3 : 0.27	c : 0.21	d : 0.10	4 : 0.08	b : 0.08	2 : 0.06	= : 0.06	e : 0.02	] : 0.02	a : 0.02	0 : 0.02	g : 0.02	
c : 0.25	d : 0.14	b : 0.10	4 : 0.10	e : 0.08	] : 0.08	= : 0.08	3 : 0.04	i : 0.02	0 : 0.02	a : 0.02	g : 0.02	
c : 0.29	d : 0.12	b : 0.12	e : 0.08	4 : 0.08	= : 0.08	2 : 0.04	] : 0.04	a : 0.02	i : 0.02	0 : 0.02	: : 0.02	g : 0.02	
c : 0.21	e : 0.10	d : 0.10	] : 0.10	: : 0.08	= : 0.08	b : 0.06	4 : 0.06	2 : 0.04	h : 0.02	i : 0.02	0 : 0.02	C : 0.02	3 : 0.02	g : 0.02	
e : 0.19	d : 0.14	c : 0.12	= : 0.10	: : 0.06	3 : 0.06	4 : 0.06	f : 0.04	b : 0.04	h : 0.02	a : 0.02	2 : 0.02	i : 0.02	0 : 0.02	C : 0.02	g : 0.02	
e : 0.17	] : 0.12	= : 0.10	3 : 0.08	d : 0.08	: : 0.06	f : 0.06	4 : 0.06	h : 0.04	c : 0.04	2 : 0.02	i : 0.02	b : 0.02	0 : 0.02	C : 0.02	g : 0.02	a : 0.02	

#score	510.0363554118913
#seq	47
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_UTR_m1_run1.txt

#BEAR
ee[ddddvvvvvvvvvvvvvddddeee	chr5:130498048-130498343(-)$1	295	21	48	23.5339
eeeeeyyyyyyyyyyyyyyyyeeeee]	chr12:51399303-51399559(-)$1	256	41	68	22.7101
iiiiiiiitttttttttttiiiiiiii	chr1:29485878-29486110(-)$1	232	91	118	23.6011
cc[cccyyyyyyyyyyyyyyyyccc]c	chrX:135958522-135958767(-)$1	245	162	189	23.4221
#eeeeeyyyyyyyyyyyyyyyyeeeee	chr14:73577420-73577739(+)$1	319	254	281	23.1772
========vvvvvvvvvvvvv======	chr1:24975180-24975498(+)$1	318	207	234	24.7183
b[fffffftttttttttttffffff]b	chrX:135961350-135961599(-)$1	249	90	117	22.1583
"""cccyyyyyyyyyyyyyyyyccc22	chr3:43743578-43743826(+)$1	248	134	161	23.2262
gggggg[auuuuuuuuuuuua]ggggg	chr16:74685676-74685937(-)$1	261	171	198	25.5437
ee[eeeeeuuuuuuuuuuuueeeee]e	chr6:4064918-4065180(+)$1	262	149	176	24.4390
iiiiiiyyyyyyyyyyyyyyyyiiiii	chr17:31065268-31065547(-)$1	279	119	146	23.7370
hh[cccyyyyyyyyyyyyyyyyccc]h	chr12:123005800-123006089(-)$1	289	104	131	23.0415
##eeeeevvvvvvvvvvvvveeeee33	chr2:54112769-54113014(-)$1	245	170	197	24.4546
"""eeeeettttttttttteeeee333	chr11:9168592-9168845(-)$1	253	155	182	23.5683
fff[ddddtttttttttttdddd]fff	chr3:195778949-195779155(-)$1	206	98	125	22.3826
::dddd[auuuuuuuuuuuua]dddd:	chr18:9563371-9563687(-)$1	316	199	226	21.1466
eee!!ccctttttttttttccc]eeee	chr11:43467369-43467618(+)$1	249	51	78	23.3741
hhhhhhhwwwwwwwwwwwwwwhhhhhh	chr6:91260111-91260385(-)$1	274	214	241	21.3777
ggggg!!attttttttttta22ggggg	chr12:133252290-133252549(-)$1	259	72	99	24.3055
:gggggggtttttttttttggggggge	chr3:42674951-42675234(+)$1	283	70	97	22.6345
"""eeeeeuuuuuuuuuuuueeeeegg	chr6:4062301-4062563(+)$1	262	119	146	24.6729
ggggdddduuuuuuuuuuuudddd::d	chr6:30584859-30585111(-)$1	252	52	79	21.9698
hh!!ddddvvvvvvvvvvvvvdddd33	chr19:53119967-53120259(-)$1	292	20	47	23.5651
[ffffffvvvvvvvvvvvvvffffff]	chr1:145441070-145441320(+)$1	250	119	146	23.4702
"""eeeeeuuuuuuuuuuuueeeee]a	chr16:24807081-24807333(+)$1	252	29	56	24.7060
dddd[ddddtttttttttttdddd]dd	chr1:46078714-46078980(+)$1	266	210	237	21.5041
#ffffffwwwwwwwwwwwwwwffffff	chr18:33744312-33744563(+)$1	251	61	88	22.5756
cc[ddddvvvvvvvvvvvvvdddd]cc	chr7:150779621-150779886(-)$1	265	236	263	23.5886
[bb[ddddvvvvvvvvvvvvvdddd]b	chr15:69072690-69072914(-)$1	224	168	195	23.0284
e[a[cccwwwwwwwwwwwwwwccca]e	chr16:56968986-56969277(+)$1	291	130	157	23.6011
###bb[bbvvvvvvvvvvvvvbb]bb4	chr12:56680125-56680396(-)$1	271	30	57	21.8122
gggggcccuuuuuuuuuuuuccc]ggg	chr15:41246298-41246566(+)$1	268	44	71	25.1034
iiiiiiyyyyyyyyyyyyyyyyiiiii	chr17:74731013-74731363(-)$1	350	219	246	23.7370
::ffffffuuuuuuuuuuuuffffffc	chr2:153547361-153547596(-)$1	235	81	108	21.5376
f!!eeeeeuuuuuuuuuuuueeeee]f	chr2:114670632-114670941(+)$1	309	80	107	24.5782
gggggggvvvvvvvvvvvvvggggggg	chr14:73572503-73572794(+)$1	291	49	76	24.7972
gggggggvvvvvvvvvvvvvggggggg	chr5:137902558-137902802(-)$1	244	121	148	24.7972
ggg[a[a[attttttttttta]a]a]g	chr6:32943001-32943264(+)$1	263	52	79	24.1667
%%eeeeewwwwwwwwwwwwwweeeee5	chr15:45008402-45008711(+)$1	309	34	61	21.3741
ggg"""ccctttttttttttcccgggg	chr7:151167601-151167858(-)$1	257	145	172	23.5302
+ffffffvvvvvvvvvvvvvffffff4	chr9:95080812-95081120(-)$1	308	130	157	22.6703
eeee[cccuuuuuuuuuuuuccceeee	chr7:92204977-92205242(-)$1	265	162	189	24.3958
eggggggguuuuuuuuuuuuggggggg	chr20:42088270-42088564(+)$1	294	123	150	24.8085
!!eeeeewwwwwwwwwwwwwweeeeed	chr11:68358024-68358277(+)$1	253	115	142	23.4286
ffffff!!attttttttttta]fffff	chr14:23791036-23791292(+)$1	256	133	160	23.1858
b[bb[ccctttttttttttccc]bb]b	chr12:80172227-80172507(-)$1	280	106	133	22.1614
[gggggggtttttttttttggggggg]	chr2:38536378-38536673(-)$1	295	267	294	23.7834
gggggggwwwwwwwwwwwwwwgggggg	chr9:95027707-95027946(-)$1	239	35	62	24.0248
gggggggvvvvvvvvvvvvvggggggg	chr5:137909404-137909638(-)$1	234	124	151	24.7972
dccccccvvvvvvvvvvvvvccc22cc	chr12:122992859-122993104(-)$1	245	155	182	23.3300
d[ddddyyyyyyyyyyyyyyyydddd2	chr10:70532666-70532961(+)$1	295	44	71	22.2079
gggggggvvvvvvvvvvvvvggggggg	chr2:171863019-171863281(-)$1	262	1	28	24.7972
cc"""cccvvvvvvvvvvvvvccc333	chr8:61531039-61531321(+)$1	282	165	192	24.2151
F::eeeeewwwwwwwwwwwwwweeeee	chr20:34329909-34330138(-)$1	229	77	104	20.1436
ggg!!ddddtttttttttttdddd22g	chr2:201724299-201724576(-)$1	277	103	130	22.6615
eee[bbyyyyyyyyyyyyyyyybbeee	chr6:10894334-10894620(+)$1	286	48	75	21.8319

#otherMatches

#Seq PSSM
GGUGAUACCCAAGAAACAUAUAUCCCA	chr5:130498048-130498343(-)$1	295	21	48	23.5339
UGUCCUUUUUGGGAAGUGUUUGGGCAC	chr12:51399303-51399559(-)$1	256	41	68	22.7101
AUUUAUUUGAACCUUCCAAAGGUGGAU	chr1:29485878-29486110(-)$1	232	91	118	23.6011
GUGAAUGAUGCUUAAAAUUUUAAUUgg	chrX:135958522-135958767(-)$1	245	162	189	23.4221
AGCCUUGUCUGAAACCUACUCUGAGGC	chr14:73577420-73577739(+)$1	319	254	281	23.1772
AUUUUUGAAUGGAAAAAAUGCUCGAGA	chr1:24975180-24975498(+)$1	318	207	234	24.7183
AGUAUUUGGCAAAUAUGGACGAAUAGU	chrX:135961350-135961599(-)$1	249	90	117	22.1583
CUUGCACAUACAAAAAAGAACCUGUUC	chr3:43743578-43743826(+)$1	248	134	161	23.2262
AAAUUUCGGAAGGCUAGAAACUAGAUU	chr16:74685676-74685937(-)$1	261	171	198	25.5437
AGUGAUCAAGAUAUGGAAGCUGAUUUC	chr6:4064918-4065180(+)$1	262	149	176	24.4390
GAAUUGUUUUUUCUGUGCUUCUCAGUU	chr17:31065268-31065547(-)$1	279	119	146	23.7370
GUAUUCACAGAUAAUGAAGGAAGAAAA	chr12:123005800-123006089(-)$1	289	104	131	23.0415
CUACCUUUGUUUUUCAAGGUAAGGUUU	chr2:54112769-54113014(-)$1	245	170	197	24.4546
AUAAGCGCUAUGCCUUCCUGCGCUGUG	chr11:9168592-9168845(-)$1	253	155	182	23.5683
AGGUGGAGUAUCACUUCCUCUCUCCCU	chr3:195778949-195779155(-)$1	206	98	125	22.3826
CCAUCAGUAUAGAAAAGAGAAGUGAUU	chr18:9563371-9563687(-)$1	316	199	226	21.1466
uguagauuuucuaagaacUAAUaauaa	chr11:43467369-43467618(+)$1	249	51	78	23.3741
GGAAGAGUAUUGACUUGAUUUUUCUUU	chr6:91260111-91260385(-)$1	274	214	241	21.3777
UUGGGAGAGGAAUUUGGAAUAGCUUGA	chr12:133252290-133252549(-)$1	259	72	99	24.3055
AUGAAAUGCAAACAUUAUACAUUUUAA	chr3:42674951-42675234(+)$1	283	70	97	22.6345
ACUUUUCCUUUUGAUGGUGCGGAAAGA	chr6:4062301-4062563(+)$1	262	119	146	24.6729
GUCCGGGUAUAAAAGACUCCACCCGAG	chr6:30584859-30585111(-)$1	252	52	79	21.9698
cuaaucguucaacucccacuuaugagu	chr19:53119967-53120259(-)$1	292	20	47	23.5651
CCUGCAUCCUCAACAACAAUGUGCAGU	chr1:145441070-145441320(+)$1	250	119	146	23.4702
aaaguugcgauaacuaguaagcgacag	chr16:24807081-24807333(+)$1	252	29	56	24.7060
GUUGUUAGCCACUCAGUACUGUUGUCA	chr1:46078714-46078980(+)$1	266	210	237	21.5041
UAAAAUGUUUUCUCUUCAGUUUAUUUU	chr18:33744312-33744563(+)$1	251	61	88	22.5756
AUGACCCUGAUUGAAGGGGUGGGUGAU	chr7:150779621-150779886(-)$1	265	236	263	23.5886
AUGGCAGCCUUUUUACUCUCAGCUGGU	chr15:69072690-69072914(-)$1	224	168	195	23.0284
ACCUGUGUUACUCUUUCUUUCCAUGAU	chr16:56968986-56969277(+)$1	291	130	157	23.6011
AAAGAAGACUAAGAAUAAGAAUCAUUG	chr12:56680125-56680396(-)$1	271	30	57	21.8122
CAGCGGGAUUGAUAAAGGUUUCCUUGC	chr15:41246298-41246566(+)$1	268	44	71	25.1034
AGGUUAUUUUGUAACAUUUGUCUAACU	chr17:74731013-74731363(-)$1	350	219	246	23.7370
UUUGCCUGUUUUUUAUUUUUUAGGUAC	chr2:153547361-153547596(-)$1	235	81	108	21.5376
AUUAGUGAAAUCUUUAUAAAUUAUUUU	chr2:114670632-114670941(+)$1	309	80	107	24.5782
UUUGUUUACAUUAGAGAAAAAAGCAGA	chr14:73572503-73572794(+)$1	291	49	76	24.7972
CCAAUGUGGUUAAUAUGUAGACGUUGG	chr5:137902558-137902802(-)$1	244	121	148	24.7972
AUAGGGGGGgugugugugugugugugu	chr6:32943001-32943264(+)$1	263	52	79	24.1667
UUCUAACCAUUUUAGACAUUUGUUAGU	chr15:45008402-45008711(+)$1	309	34	61	21.3741
GCUUUGGCAGAAUCUUGGAAUGCAGCU	chr7:151167601-151167858(-)$1	257	145	172	23.5302
AAAUUCUUUUUUUUUCUUUUAGAAUUG	chr9:95080812-95081120(-)$1	308	130	157	22.6703
CUAUACUUUUACAUUGCCUUAAGAUAG	chr7:92204977-92205242(-)$1	265	162	189	24.3958
CCCUUCAUGUGAUAAAGGUGGUGGAGG	chr20:42088270-42088564(+)$1	294	123	150	24.8085
UCGAGUAUCAGACAUCAACUUUACUCU	chr11:68358024-68358277(+)$1	253	115	142	23.4286
UGGGUCAGCGAUCACUACAAGGGGCCC	chr14:23791036-23791292(+)$1	256	133	160	23.1858
UGGUACCUUAAAUCGAUCUAGGAACGA	chr12:80172227-80172507(-)$1	280	106	133	22.1614
GUGAUUUAUCUUUCUGCCUUGAAUUAG	chr2:38536378-38536673(-)$1	295	267	294	23.7834
GCAUGCUAUAUAAAUUAACUCAGUAUG	chr9:95027707-95027946(-)$1	239	35	62	24.0248
GUUGGUAUUGAUUUGGGUACUACCAAC	chr5:137909404-137909638(-)$1	234	124	151	24.7972
CAUCAGGAACACAAGUAACACCUCAGA	chr12:122992859-122993104(-)$1	245	155	182	23.3300
AGUAAAUAAAUAAUAAAGGCAUUUUAA	chr10:70532666-70532961(+)$1	295	44	71	22.2079
GGAAAGAUAUGCUUGCUUUCUCUUUCC	chr2:171863019-171863281(-)$1	262	1	28	24.7972
GAGGUAUAUACAUAUAAAUAUUGUUGG	chr8:61531039-61531321(+)$1	282	165	192	24.2151
UUCUCUAAUUCCAUUGUUUUUUUUAGA	chr20:34329909-34330138(-)$1	229	77	104	20.1436
UUAGAUGAAAUUGUUGAUACUUUAGGU	chr2:201724299-201724576(-)$1	277	103	130	22.6615
AGAUGGCCUGAAAGAAGAUGAACCUCU	chr6:10894334-10894620(+)$1	286	48	75	21.8319

#DB
((.((((.............)))))))	chr5:130498048-130498343(-)$1	1	21	48	23.5339
(((((................))))).	chr12:51399303-51399559(-)$1	1	41	68	22.7101
((((((((...........))))))))	chr1:29485878-29486110(-)$1	1	91	118	23.6011
((.(((................))).)	chrX:135958522-135958767(-)$1	1	162	189	23.4221
.(((((................)))))	chr14:73577420-73577739(+)$1	1	254	281	23.1772
((((((((.............))))))	chr1:24975180-24975498(+)$1	1	207	234	24.7183
(.((((((...........)))))).)	chrX:135961350-135961599(-)$1	1	90	117	22.1583
...(((................)))..	chr3:43743578-43743826(+)$1	1	134	161	23.2262
((((((.(............).)))))	chr16:74685676-74685937(-)$1	1	171	198	25.5437
((.(((((............))))).)	chr6:4064918-4065180(+)$1	1	149	176	24.4390
((((((................)))))	chr17:31065268-31065547(-)$1	1	119	146	23.7370
((.(((................))).)	chr12:123005800-123006089(-)$1	1	104	131	23.0415
..(((((.............)))))..	chr2:54112769-54113014(-)$1	1	170	197	24.4546
...(((((...........)))))...	chr11:9168592-9168845(-)$1	1	155	182	23.5683
(((.((((...........)))).)))	chr3:195778949-195779155(-)$1	1	98	125	22.3826
..((((.(............).)))).	chr18:9563371-9563687(-)$1	1	199	226	21.1466
(((..(((...........))).))))	chr11:43467369-43467618(+)$1	1	51	78	23.3741
(((((((..............))))))	chr6:91260111-91260385(-)$1	1	214	241	21.3777
(((((..(...........)..)))))	chr12:133252290-133252549(-)$1	1	72	99	24.3055
.(((((((...........)))))))(	chr3:42674951-42675234(+)$1	1	70	97	22.6345
...(((((............)))))))	chr6:4062301-4062563(+)$1	1	119	146	24.6729
))))((((............))))..(	chr6:30584859-30585111(-)$1	1	52	79	21.9698
((..((((.............))))..	chr19:53119967-53120259(-)$1	1	20	47	23.5651
.((((((.............)))))).	chr1:145441070-145441320(+)$1	1	119	146	23.4702
...(((((............))))).)	chr16:24807081-24807333(+)$1	1	29	56	24.7060
((((.((((...........)))).))	chr1:46078714-46078980(+)$1	1	210	237	21.5041
.((((((..............))))))	chr18:33744312-33744563(+)$1	1	61	88	22.5756
((.((((.............)))).))	chr7:150779621-150779886(-)$1	1	236	263	23.5886
.((.((((.............)))).)	chr15:69072690-69072914(-)$1	1	168	195	23.0284
(.(.(((..............)))).)	chr16:56968986-56969277(+)$1	1	130	157	23.6011
...((.((.............)).)).	chr12:56680125-56680396(-)$1	1	30	57	21.8122
((((((((............))).)))	chr15:41246298-41246566(+)$1	1	44	71	25.1034
((((((................)))))	chr17:74731013-74731363(-)$1	1	219	246	23.7370
..((((((............))))))(	chr2:153547361-153547596(-)$1	1	81	108	21.5376
(..(((((............))))).)	chr2:114670632-114670941(+)$1	1	80	107	24.5782
(((((((.............)))))))	chr14:73572503-73572794(+)$1	1	49	76	24.7972
(((((((.............)))))))	chr5:137902558-137902802(-)$1	1	121	148	24.7972
(((.(.(.(...........).).).)	chr6:32943001-32943264(+)$1	1	52	79	24.1667
..(((((..............))))).	chr15:45008402-45008711(+)$1	1	34	61	21.3741
(((...(((...........)))))))	chr7:151167601-151167858(-)$1	1	145	172	23.5302
.((((((.............)))))).	chr9:95080812-95081120(-)$1	1	130	157	22.6703
((((.(((............)))))))	chr7:92204977-92205242(-)$1	1	162	189	24.3958
((((((((............)))))))	chr20:42088270-42088564(+)$1	1	123	150	24.8085
..(((((..............))))))	chr11:68358024-68358277(+)$1	1	115	142	23.4286
((((((..(...........).)))))	chr14:23791036-23791292(+)$1	1	133	160	23.1858
(.((.(((...........))).)).)	chr12:80172227-80172507(-)$1	1	106	133	22.1614
.(((((((...........))))))).	chr2:38536378-38536673(-)$1	1	267	294	23.7834
(((((((..............))))))	chr9:95027707-95027946(-)$1	1	35	62	24.0248
(((((((.............)))))))	chr5:137909404-137909638(-)$1	1	124	151	24.7972
(((((((.............)))..))	chr12:122992859-122993104(-)$1	1	155	182	23.3300
(.((((................)))).	chr10:70532666-70532961(+)$1	1	44	71	22.2079
(((((((.............)))))))	chr2:171863019-171863281(-)$1	1	1	28	24.7972
((...(((.............)))...	chr8:61531039-61531321(+)$1	1	165	192	24.2151
(..(((((..............)))))	chr20:34329909-34330138(-)$1	1	77	104	20.1436
(((..((((...........))))..)	chr2:201724299-201724576(-)$1	1	103	130	22.6615
(((.((................)))))	chr6:10894334-10894620(+)$1	1	48	75	21.8319

#PSSM
g : 0.21	e : 0.14	# : 0.07	" : 0.07	i : 0.05	c : 0.05	h : 0.05	f : 0.05	: : 0.05	[ : 0.05	d : 0.05	b : 0.03	= : 0.01	% : 0.01	+ : 0.01	! : 0.01	F : 0.01	
g : 0.26	e : 0.12	f : 0.08	c : 0.07	[ : 0.07	" : 0.07	i : 0.05	h : 0.05	: : 0.05	# : 0.03	! : 0.03	= : 0.01	d : 0.01	b : 0.01	% : 0.01	
g : 0.26	e : 0.14	f : 0.12	[ : 0.08	" : 0.08	i : 0.05	d : 0.05	! : 0.03	b : 0.03	= : 0.01	h : 0.01	a : 0.01	# : 0.01	c : 0.01	: : 0.01	
e : 0.21	g : 0.21	f : 0.10	d : 0.08	[ : 0.08	c : 0.07	i : 0.05	! : 0.05	b : 0.03	" : 0.03	= : 0.01	h : 0.01	
e : 0.19	g : 0.19	d : 0.14	f : 0.10	c : 0.08	i : 0.05	[ : 0.05	! : 0.03	b : 0.03	" : 0.03	= : 0.01	h : 0.01	a : 0.01	
d : 0.17	c : 0.17	e : 0.17	g : 0.16	f : 0.10	i : 0.05	[ : 0.03	y : 0.01	= : 0.01	h : 0.01	! : 0.01	" : 0.01	b : 0.01	
y : 0.16	e : 0.16	d : 0.14	c : 0.14	g : 0.14	f : 0.08	[ : 0.03	! : 0.03	i : 0.01	= : 0.01	h : 0.01	b : 0.01	a : 0.01	
v : 0.17	y : 0.16	e : 0.10	d : 0.10	c : 0.10	w : 0.10	a : 0.05	g : 0.05	f : 0.03	i : 0.01	= : 0.01	b : 0.01	[ : 0.01	! : 0.01	
v : 0.26	u : 0.19	y : 0.16	t : 0.16	w : 0.12	d : 0.03	a : 0.03	c : 0.01	
v : 0.26	t : 0.24	u : 0.19	y : 0.16	w : 0.12	
v : 0.26	t : 0.24	u : 0.19	y : 0.16	w : 0.12	
v : 0.26	t : 0.24	u : 0.19	y : 0.16	w : 0.12	
v : 0.26	t : 0.24	u : 0.19	y : 0.16	w : 0.12	
v : 0.26	t : 0.24	u : 0.19	y : 0.16	w : 0.12	
v : 0.26	t : 0.24	u : 0.19	y : 0.16	w : 0.12	
v : 0.26	t : 0.24	u : 0.19	y : 0.16	w : 0.12	
v : 0.26	t : 0.24	u : 0.19	y : 0.16	w : 0.12	
v : 0.26	t : 0.24	u : 0.19	y : 0.16	w : 0.12	
v : 0.26	t : 0.24	u : 0.19	y : 0.16	w : 0.12	
v : 0.26	u : 0.19	y : 0.16	w : 0.12	t : 0.08	c : 0.03	g : 0.03	i : 0.01	f : 0.01	e : 0.01	d : 0.01	a : 0.01	
y : 0.16	w : 0.12	g : 0.12	d : 0.10	e : 0.10	c : 0.10	v : 0.08	f : 0.07	a : 0.07	i : 0.01	2 : 0.01	
e : 0.16	d : 0.14	y : 0.14	c : 0.14	g : 0.14	f : 0.08	] : 0.07	i : 0.01	= : 0.01	h : 0.01	2 : 0.01	b : 0.01	w : 0.01	
e : 0.19	d : 0.17	g : 0.17	c : 0.16	f : 0.10	i : 0.05	] : 0.03	b : 0.03	= : 0.01	h : 0.01	a : 0.01	
e : 0.23	g : 0.19	d : 0.16	f : 0.10	c : 0.08	] : 0.07	i : 0.05	b : 0.03	= : 0.01	h : 0.01	2 : 0.01	
e : 0.24	g : 0.21	f : 0.12	d : 0.07	i : 0.05	c : 0.05	3 : 0.03	] : 0.03	a : 0.03	b : 0.03	2 : 0.03	= : 0.01	h : 0.01	: : 0.01	
g : 0.23	] : 0.17	e : 0.16	f : 0.10	3 : 0.07	i : 0.05	d : 0.05	2 : 0.03	c : 0.03	= : 0.01	h : 0.01	: : 0.01	b : 0.01	
g : 0.23	e : 0.16	c : 0.07	3 : 0.07	f : 0.07	] : 0.05	i : 0.05	b : 0.05	d : 0.05	2 : 0.03	h : 0.03	4 : 0.03	= : 0.01	: : 0.01	a : 0.01	5 : 0.01	

#score	1307.113451174764
#seq	56
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_CDS_m1_run2.txt

#BEAR
========eeeee!!bboooooobb]eeeee:dddd[ddd	chr16:2580589-2580922(+)$1	333	124	164	11.5056
[a[ccc[bb!!eeeeennnnneeeee22bb]ccc]a]ddd	chr2:85769590-85769803(+)$1	213	107	147	11.1015
cc!!a[dddd[eeeeecccmmmmccc333eeeee]dddda	chr22:20073439-20073660(+)$1	221	89	129	12.4368
eeee[bb!!ccc[ddddoooooodddd333ccc]bb]eee	chr5:179046223-179046484(-)$1	261	80	120	14.4845
ee!!ccc####ffffffooooooffffff22ccc22eeee	chr19:46522370-46522671(+)$1	301	55	95	12.5815
iiiiii!!dddd!!cccooooooccc22dddd]iiiiiii	chr12:62996821-62997049(+)$1	228	110	150	16.7295
ccc[eeeeebba[ddddmmmmdddd]a]bb]eeeee]ccc	chrX:48814597-48814832(-)$1	235	71	111	11.4647
ee"""dddd####ddddnnnnnddddddddeeeee22eee	chr7:150935603-150935845(+)$1	242	14	54	12.1605
[bbeeeee!!bbcccrrrrrrrrrccc]bb]eeeee]bb]	chr1:1284336-1284625(-)$1	289	175	215	9.3314
iiiiiii[dddd!!cccooooooccc333ddddiiiiiii	chr17:41622778-41623041(+)$1	263	21	61	16.7376
==========[ccc[cccnnnnnccc]ccc]=========	chr22:20073885-20074174(+)$1	289	80	120	15.2040
eee!!ffffff"""cccoooooocccffffff22eeeee:	chr6:144758714-144758980(+)$1	266	89	129	12.2235
====[ccc[a!!bb!!ammmma22bba]ccc=========	chr9:101558572-101558850(-)$1	278	118	158	13.3898
iiiiii!!dddd!!cccooooooccc22dddd]iiiiiii	chr12:62996802-62997021(+)$1	219	129	169	16.7295
dddda[bb[ccc[ddddoooooodddd]ccc]bb]a22dd	chr17:79860502-79860766(-)$1	264	134	174	13.6518
cc[ccc$$$$$bbddddllldddd]bb4444ccc]ccc]f	chr1:19441218-19441471(-)$1	253	108	148	11.0961
beeeeeccc####ddddmmmmdddd4444ccc22eeeee]	chr4:1804673-1804902(+)$1	229	137	177	12.2225
#gggggggccc!!ddddnnnnndddd22ccc22ggggggg	chr6:4032034-4032290(+)$1	256	132	172	14.3691
bb[cccggggggg!!aooooooa22ggggggg333ccc]b	chr2:219265477-219265718(+)$1	241	132	172	12.7834
e[ffffff"""ffffffooooooffffffffffffeeeee	chr16:28877649-28877919(+)$1	270	120	160	11.4968
iiiiii!!dddd!!cccooooooccc22dddd]iiiiiii	chr12:62996785-62997002(+)$1	217	146	186	16.7295
F:ggggggg"""a!!ddddmmmmdddd22a22ggggggg:	chr5:179248449-179248705(+)$1	256	160	200	11.3586
iiiiii!!dddd!!cccooooooccc22dddd]iiiiiii	chr12:62996872-62997155(+)$1	283	59	99	16.7295
iiiiiiiccc[ccceeeeemmmmeeeee]cccccc4444i	chr12:72056738-72057002(-)$1	264	46	86	11.6762
!!dddd!!bb"""ddddnnnnndddd22bb22dddd22dd	chr11:57564218-57564487(+)$1	269	226	266	12.1374
ggggggeeeee!!a[bboooooobb]a22eeeee]ggggg	chr8:103424328-103424631(-)$1	303	144	184	13.8815
"""ffffff!!bb"""ddddllldddd]bb22ffffff33	chr13:113863808-113864055(+)$1	247	66	106	11.3428
iiiiii!!dddd!!cccooooooccc22dddd]iiiiiii	chr12:62996849-62997072(+)$1	223	82	122	16.7295
!!eeeee[ccc[ccc[cccmmmmccc]ccc]ccc]eeeee	chr9:116984402-116984634(+)$1	232	128	168	12.1661
ggggggccc[ccc[cccccclllccc22ccc]cccccc]g	chr2:54197724-54198040(-)$1	316	150	190	13.4203
cc!!a[ccc[dddd!!aooooooa22dddd]ccc]a5555	chr7:77166718-77166983(+)$1	265	95	135	11.2878
ccc[ccc!!a[eeeeeooooooeeeee]a22ccc]ccc]f	chr17:8108125-8108364(-)$1	239	186	226	14.0091
b!!a[ccc$$$$$ddddlllddddccc333a22bb]hhhh	chr6:144809778-144809994(+)$1	216	152	192	11.3472
==####ccc####ddddmmmmdddd]ccc22=========	chr10:70481251-70481487(+)$1	236	88	128	14.1035
c"""dddd"""a[a[bboooooobb]a]a333dddd333c	chr1:36788404-36788682(+)$1	278	107	147	14.8813
ccc####ccc"""ddddnnnnnddddccc4444cccdddd	chr1:19487406-19487667(-)$1	261	146	186	13.3725
cc!!a[dddd[eeeeecccmmmmccc333eeeee]dddda	chr22:20073483-20073710(+)$1	227	45	85	12.4368
=========bbbb[ddddooooooddddbb]bb:bb[ccc	chr17:36760601-36760863(-)$1	262	67	107	11.3156
[eeeeeccc!!a[a[ddddmmmmdddd]a]a22ccc4444	chr2:54856728-54856971(+)$1	243	45	85	12.8020
eeee[ccc####a[ddddnnnnndddd]accceeeee]dd	chr3:49050843-49051138(+)$1	295	201	241	13.4458
[ffffffdddd!!ddddoooooodddd]dddd]ffffff]	chr7:150935645-150935908(+)$1	263	155	195	14.1082
gggggggggdddd[cccmmmmccc22dddd]ggggggg]g	chr2:231902493-231902754(+)$1	261	66	106	11.6136
====[ccc[a!!bb!!ammmma22bba]ccc=========	chr9:101558650-101558912(-)$1	262	180	220	13.3898
cc!!ccc!!a[ccc[eeeeellleeeeeccc]a22ccc]c	chr10:120802012-120802296(-)$1	284	114	154	11.9059
cc!!a[dddd[eeeeecccmmmmccc333eeeee]dddda	chr22:20073460-20073683(+)$1	223	68	108	12.4368
a[ggggggg[a[gggggggmmmmgggggggaggggggg]a	chr17:80197785-80198011(+)$1	226	20	60	11.6958
cc[ggggggg[bbddddoooooodddd]bb]ggggggg]c	chr17:79972868-79973103(+)$1	235	192	232	16.0496
c"""ffffff[bb!!eeeeellleeeeebb]ffffff]cc	chr3:50103764-50104027(+)$1	263	83	123	10.3349
ee[bb[ggggggg!!bboooooobb22ggggggg]bb]ee	chr9:101558430-101558693(-)$1	263	141	181	12.8252
!!ffffff[ccc[ddddoooooodddd]cccffffffddd	chr3:49055820-49056130(-)$1	310	122	162	14.4949
==========[ccc[cccnnnnnccc]ccc]=========	chr22:20073784-20074049(+)$1	265	181	221	15.2040
ffccc!!ccc####cccmmmmccc333ccc]ccc22ffff	chr3:49050193-49050494(+)$1	301	105	145	12.2602
!dddd[a[dddd[ddddnnnnndddddddd]a]dddd]cc	chr12:62996677-62996969(+)$1	292	249	289	11.8135

#otherMatches

#Seq PSSM
GGGAACAGCCAGGGAAGAACCACCUGCCUGGGCAGGGCCU	chr16:2580589-2580922(+)$1	333	124	164	11.5056
GUUUGACUGGACGCAAAAUCAUUGUGGACACUUAUGGCGG	chr2:85769590-85769803(+)$1	213	107	147	11.1015
GCAGGAGAAGCGGUGAUGGAGAGCCGAGCUCGCCCCUUCC	chr22:20073439-20073660(+)$1	221	89	129	12.4368
GGAAAUCGUGCCAAAUGGGAUAACAUUGCCGGUGGACUUC	chr5:179046223-179046484(-)$1	261	80	120	14.4845
UUAUUGGAGAAGGAGACAGUGGGGUUUUUGGCCAUGGGAG	chr19:46522370-46522671(+)$1	301	55	95	12.5815
GGGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCCCCCA	chr12:62996821-62997049(+)$1	228	110	150	16.7295
gccgaugcccccggcgccgcggcgcggcggaggugugggc	chrX:48814597-48814832(-)$1	235	71	111	11.4647
CUGGUGCAGAAGUUCUCCCUGCGAGACUGCAGCCCACGGC	chr7:150935603-150935845(+)$1	242	14	54	12.1605
gcgccAUGGCGGAGACCAAGAUUAUCUACCACAUGGACGA	chr1:1284336-1284625(-)$1	289	175	215	9.3314
GGGUCCUCGGGUGACUCAGGGGCGGGGCAGCCCAGGACUC	chr17:41622778-41623041(+)$1	263	21	61	16.7376
UGCUUGUCCCUUUGGCGGGAGUGUUGGUGACGGGGUAGGC	chr22:20073885-20074174(+)$1	289	80	120	15.2040
UUGAGAUUCAGGAACAGAUGACCCUGCUGAAUGCUAGAUG	chr6:144758714-144758980(+)$1	266	89	129	12.2235
GCGCGCGUGUGACCAGGGCGACAcggagacggcgcggcgg	chr9:101558572-101558850(-)$1	278	118	158	13.3898
GGGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCCCCCA	chr12:62996802-62997021(+)$1	219	129	169	16.7295
GUCCGGGCUCAGGCGGCGAGGCAGUCGGCUGCGCGCAGGG	chr17:79860502-79860766(-)$1	264	134	174	13.6518
UCUAUGCCAAGCCUUGCUGUGCAGUGGAUCCCAUUGAGAA	chr1:19441218-19441471(-)$1	253	108	148	11.0961
CCGGCCGGCACAAGAGCUCCAGCUCCAAGGCCCUGGCCGC	chr4:1804673-1804902(+)$1	229	137	177	12.2225
GUUAUGAGUCUGGCUCUGAAGAAGAGGGGGAAAUUCAUGA	chr6:4032034-4032290(+)$1	256	132	172	14.3691
GCUGCCCCCAGGUCUGCCCACCCUCGCCUGGGUCUGGCUG	chr2:219265477-219265718(+)$1	241	132	172	12.7834
GUGCUGGGCCCUUCUCGAUCAUCUGAGGACCUGGCCGGCC	chr16:28877649-28877919(+)$1	270	120	160	11.4968
GGGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCCCCCA	chr12:62996785-62997002(+)$1	217	146	186	16.7295
GACGCGGGUAAACAAGCGCGGGGGUGCGGGGGACUCGCGA	chr5:179248449-179248705(+)$1	256	160	200	11.3586
GGGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCCCCCA	chr12:62996872-62997155(+)$1	283	59	99	16.7295
CUUUCGAGGCAGGCCUUACCGGGGUGGGAGUCGCUGGAGU	chr12:72056738-72057002(-)$1	264	46	86	11.6762
GACCCUCGUCGGCGCCUCAGGUAGGCAAGAAUAGGGGAAG	chr11:57564218-57564487(+)$1	269	226	266	12.1374
AGUGGAGGACGAGAAGGAAAGCACCAUGACGUCCAUCCAU	chr8:103424328-103424631(-)$1	303	144	184	13.8815
gggcgggcggagcggagcucggcgggcggcggcgcucggg	chr13:113863808-113864055(+)$1	247	66	106	11.3428
GGGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCCCCCA	chr12:62996849-62997072(+)$1	223	82	122	16.7295
GAGUCCCCGGCCUCAUUGUAAGUACAUUGAUGCCUGGGGC	chr9:116984402-116984634(+)$1	232	128	168	12.1661
Agcccccggagccgggcgggcgucccgagccgggcccgcg	chr2:54197724-54198040(-)$1	316	150	190	13.4203
cgggcgggcggcgggggggccAGCGACCGCAGCCGGGGGG	chr7:77166718-77166983(+)$1	265	95	135	11.2878
CAUUCACUCGGGUGCGUGUGUUUGUAUGUCUGUGUAUGUA	chr17:8108125-8108364(-)$1	239	186	226	14.0091
UGACAGGAUAGAUGCUUUCCAAGUUCCACAGGAAGCUCAG	chr6:144809778-144809994(+)$1	216	152	192	11.3472
GUUUUACCCUCCUGGCCCCCCGGCCCGGGACAUCGUGGCG	chr10:70481251-70481487(+)$1	236	88	128	14.1035
GGAAGGGGAUGGUGGUCAGGGAAGGGUUCAGGCCCCCAGU	chr1:36788404-36788682(+)$1	278	107	147	14.8813
GACAAAGCCAAGGUUACCAUCAGUGAUGGAAAGGUUGCUG	chr1:19487406-19487667(-)$1	261	146	186	13.3725
GCAGGAGAAGCGGUGAUGGAGAGCCGAGCUCGCCCCUUCC	chr22:20073483-20073710(+)$1	227	45	85	12.4368
GGGCAGAGCCCGCUCUCCCAGGGAGGAGGCUGGACCGAGG	chr17:36760601-36760863(-)$1	262	67	107	11.3156
GCAGAGCUGACGCGGCUGCGGAAGCAGGCACUCCAGGACA	chr2:54856728-54856971(+)$1	243	45	85	12.8020
UGAUUCUCCGGGAGGGUCUGCAUGGCCGUGAGAUCACUUG	chr3:49050843-49051138(+)$1	295	201	241	13.4458
UUUGUCUGCCUCAGCCCCAGGAAGGGCAAGGCAAGAUGGU	chr7:150935645-150935908(+)$1	263	155	195	14.1082
gcggcggcggcggcggcgCGCGCCAUCCGCUCGCCGCUGG	chr2:231902493-231902754(+)$1	261	66	106	11.6136
GCGCGCGUGUGACCAGGGCGACAcggagacggcgcggcgg	chr9:101558650-101558912(-)$1	262	180	220	13.3898
UAGACCAGACGAUGAUCGGGUUCCCCGGCGUGGCAUGGAU	chr10:120802012-120802296(-)$1	284	114	154	11.9059
GCAGGAGAAGCGGUGAUGGAGAGCCGAGCUCGCCCCUUCC	chr22:20073460-20073683(+)$1	223	68	108	12.4368
CAGUGGCCUGCGUGGCUGGGAGCCCGGUCAGAGGCCGCCG	chr17:80197785-80198011(+)$1	226	20	60	11.6958
GGACUCUGGGAGGCUUCUUUUUUGGGGUCCAUCCAGAGGC	chr17:79972868-79973103(+)$1	235	192	232	16.0496
GAAUAAACUGGCUUGUCUGCUUUGCAGAAGGCAGUUUCCC	chr3:50103764-50104027(+)$1	263	83	123	10.3349
GGACGAGGCGGGCAACACCGCACUGCAGUUCGCCGCGGCC	chr9:101558430-101558693(-)$1	263	141	181	12.8252
UUCCGGUCACCAUGGCGACCAGGCGCCUUGGGGUCGGGGA	chr3:49055820-49056130(-)$1	310	122	162	14.4949
UGCUUGUCCCUUUGGCGGGAGUGUUGGUGACGGGGUAGGC	chr22:20073784-20074049(+)$1	265	181	221	15.2040
CCUGCGUGGUUAUGAGGAGCUCCUGUUGCUGGCAUCGGGC	chr3:49050193-49050494(+)$1	301	105	145	12.2602
CGGGUGGGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGC	chr12:62996677-62996969(+)$1	292	249	289	11.8135

#DB
))))))))(((((..((......)).))))).((((.(((	chr16:2580589-2580922(+)$1	1	124	164	11.5056
.(.(((.((..(((((.....)))))..)).))).).)))	chr2:85769590-85769803(+)$1	1	107	147	11.1015
((..(.((((.((((((((....)))...))))).)))))	chr22:20073439-20073660(+)$1	1	89	129	12.4368
((((.((..(((.((((......))))...))).)).)))	chr5:179046223-179046484(-)$1	1	80	120	14.4845
((..(((....((((((......))))))..)))..))))	chr19:46522370-46522671(+)$1	1	55	95	12.5815
((((((..((((..(((......)))..)))).)))))))	chr12:62996821-62997049(+)$1	1	110	150	16.7295
(((.((((((((.((((....)))).).)).))))).)))	chrX:48814597-48814832(-)$1	1	71	111	11.4647
((...((((....((((.....)))))))))))))..)))	chr7:150935603-150935845(+)$1	1	14	54	12.1605
.(((((((..(((((.........))).)).))))).)).	chr1:1284336-1284625(-)$1	1	175	215	9.3314
(((((((.((((..(((......)))...)))))))))))	chr17:41622778-41623041(+)$1	1	21	61	16.7376
((((((((((.(((.(((.....))).))).)))))))))	chr22:20073885-20074174(+)$1	1	80	120	15.2040
(((..((((((...(((......)))))))))..))))).	chr6:144758714-144758980(+)$1	1	89	129	12.2235
((((.(((.(..((..(....)..))).))))))))))))	chr9:101558572-101558850(-)$1	1	118	158	13.3898
((((((..((((..(((......)))..)))).)))))))	chr12:62996802-62997021(+)$1	1	129	169	16.7295
(((((.((.(((.((((......)))).))).)).)..))	chr17:79860502-79860766(-)$1	1	134	174	13.6518
((.(((.....((((((...)))).))....))).))).)	chr1:19441218-19441471(-)$1	1	108	148	11.0961
(((((((((....((((....))))....)))..))))).	chr4:1804673-1804902(+)$1	1	137	177	12.2225
.((((((((((..((((.....))))..)))..)))))))	chr6:4032034-4032290(+)$1	1	132	172	14.3691
((.((((((((((..(......)..)))))))...))).)	chr2:219265477-219265718(+)$1	1	132	172	12.7834
(.((((((...((((((......)))))))))))))))))	chr16:28877649-28877919(+)$1	1	120	160	11.4968
((((((..((((..(((......)))..)))).)))))))	chr12:62996785-62997002(+)$1	1	146	186	16.7295
(.(((((((...(..((((....))))..)..))))))).	chr5:179248449-179248705(+)$1	1	160	200	11.3586
((((((..((((..(((......)))..)))).)))))))	chr12:62996872-62997155(+)$1	1	59	99	16.7295
((((((((((.((((((((....))))).))))))....)	chr12:72056738-72057002(-)$1	1	46	86	11.6762
..((((..((...((((.....))))..))..))))..))	chr11:57564218-57564487(+)$1	1	226	266	12.1374
(((((((((((..(.((......)).)..))))).)))))	chr8:103424328-103424631(-)$1	1	144	184	13.8815
...((((((..((...((((...)))).))..))))))..	chr13:113863808-113864055(+)$1	1	66	106	11.3428
((((((..((((..(((......)))..)))).)))))))	chr12:62996849-62997072(+)$1	1	82	122	16.7295
..(((((.(((.(((.(((....))).))).))).)))))	chr9:116984402-116984634(+)$1	1	128	168	12.1661
(((((((((.(((.((((((...)))..))).)))))).)	chr2:54197724-54198040(-)$1	1	150	190	13.4203
((..(.(((.((((..(......)..)))).))).)....	chr7:77166718-77166983(+)$1	1	95	135	11.2878
(((.(((..(.(((((......))))).)..))).))).)	chr17:8108125-8108364(-)$1	1	186	226	14.0091
(..(.(((.....((((...)))))))...)..)).))))	chr6:144809778-144809994(+)$1	1	152	192	11.3472
((....(((....((((....)))).)))..)))))))))	chr10:70481251-70481487(+)$1	1	88	128	14.1035
(...((((...(.(.((......)).).)...))))...)	chr1:36788404-36788682(+)$1	1	107	147	14.8813
(((....(((...((((.....)))))))....)))))))	chr1:19487406-19487667(-)$1	1	146	186	13.3725
((..(.((((.((((((((....)))...))))).)))))	chr22:20073483-20073710(+)$1	1	45	85	12.4368
)))))))))((((.((((......)))))).)).((.(((	chr17:36760601-36760863(-)$1	1	67	107	11.3156
.((((((((..(.(.((((....)))).).)..)))....	chr2:54856728-54856971(+)$1	1	45	85	12.8020
((((.(((....(.((((.....)))).))))))))).))	chr3:49050843-49051138(+)$1	1	201	241	13.4458
.((((((((((..((((......)))).)))).)))))).	chr7:150935645-150935908(+)$1	1	155	195	14.1082
(((((((((((((.(((....)))..)))).))))))).)	chr2:231902493-231902754(+)$1	1	66	106	11.6136
((((.(((.(..((..(....)..))).))))))))))))	chr9:101558650-101558912(-)$1	1	180	220	13.3898
((..(((..(.(((.(((((...)))))))).)..))).)	chr10:120802012-120802296(-)$1	1	114	154	11.9059
((..(.((((.((((((((....)))...))))).)))))	chr22:20073460-20073683(+)$1	1	68	108	12.4368
(.(((((((.(.(((((((....))))))))))))))).)	chr17:80197785-80198011(+)$1	1	20	60	11.6958
((.(((((((.((((((......)))).)).))))))).)	chr17:79972868-79973103(+)$1	1	192	232	16.0496
(...((((((.((..(((((...))))))).)))))).))	chr3:50103764-50104027(+)$1	1	83	123	10.3349
((.((.(((((((..((......))..))))))).)).))	chr9:101558430-101558693(-)$1	1	141	181	12.8252
..((((((.(((.((((......)))).))))))))))))	chr3:49055820-49056130(-)$1	1	122	162	14.4949
((((((((((.(((.(((.....))).))).)))))))))	chr22:20073784-20074049(+)$1	1	181	221	15.2040
(((((..(((....(((....)))...))).)))..))))	chr3:49050193-49050494(+)$1	1	105	145	12.2602
.((((.(.((((.((((.....)))))))).).)))).))	chr12:62996677-62996969(+)$1	1	249	289	11.8135

#PSSM
c : 0.22	= : 0.13	e : 0.13	i : 0.13	[ : 0.07	! : 0.07	b : 0.05	g : 0.05	d : 0.01	# : 0.01	F : 0.01	" : 0.01	a : 0.01	f : 0.01	
c : 0.18	e : 0.15	= : 0.13	i : 0.13	g : 0.07	! : 0.07	" : 0.05	b : 0.03	d : 0.03	[ : 0.03	f : 0.03	a : 0.01	: : 0.01	
! : 0.13	i : 0.13	= : 0.11	e : 0.11	g : 0.11	[ : 0.09	c : 0.07	" : 0.07	d : 0.05	f : 0.05	b : 0.01	# : 0.01	
! : 0.13	i : 0.13	g : 0.13	= : 0.11	e : 0.11	c : 0.07	f : 0.07	" : 0.05	d : 0.05	[ : 0.03	# : 0.03	a : 0.01	b : 0.01	
c : 0.13	i : 0.13	g : 0.13	a : 0.09	[ : 0.09	e : 0.09	f : 0.09	= : 0.07	d : 0.05	# : 0.03	" : 0.01	! : 0.01	b : 0.01	
c : 0.18	[ : 0.13	i : 0.13	g : 0.13	f : 0.11	e : 0.09	= : 0.07	d : 0.05	# : 0.03	b : 0.01	! : 0.01	
c : 0.22	! : 0.13	g : 0.13	f : 0.11	d : 0.09	= : 0.07	e : 0.07	b : 0.03	i : 0.03	[ : 0.01	$ : 0.01	# : 0.01	a : 0.01	
c : 0.22	! : 0.16	g : 0.13	d : 0.11	f : 0.09	= : 0.07	e : 0.05	[ : 0.05	b : 0.03	# : 0.01	$ : 0.01	
d : 0.22	c : 0.18	g : 0.11	! : 0.07	[ : 0.07	e : 0.05	= : 0.05	f : 0.05	b : 0.03	# : 0.03	$ : 0.03	" : 0.03	
d : 0.22	c : 0.15	# : 0.09	! : 0.07	a : 0.07	b : 0.05	g : 0.05	" : 0.05	[ : 0.05	e : 0.03	= : 0.03	f : 0.03	$ : 0.03	
[ : 0.18	d : 0.18	c : 0.11	# : 0.11	! : 0.09	" : 0.09	b : 0.05	e : 0.03	$ : 0.03	g : 0.03	f : 0.01	a : 0.01	
d : 0.16	c : 0.15	e : 0.11	b : 0.11	# : 0.09	! : 0.09	" : 0.07	a : 0.05	f : 0.03	g : 0.03	[ : 0.03	$ : 0.01	
! : 0.16	[ : 0.13	c : 0.13	b : 0.13	e : 0.11	# : 0.07	" : 0.05	g : 0.05	f : 0.03	a : 0.03	d : 0.03	$ : 0.01	
d : 0.30	! : 0.20	c : 0.11	e : 0.09	[ : 0.07	a : 0.05	f : 0.03	" : 0.03	b : 0.03	g : 0.01	# : 0.01	
d : 0.32	c : 0.22	! : 0.15	e : 0.11	[ : 0.11	f : 0.03	" : 0.01	g : 0.01	
d : 0.35	c : 0.22	e : 0.15	b : 0.07	! : 0.05	f : 0.03	r : 0.01	a : 0.01	" : 0.01	[ : 0.01	g : 0.01	
d : 0.37	c : 0.30	b : 0.07	a : 0.05	e : 0.05	f : 0.03	o : 0.03	n : 0.01	r : 0.01	g : 0.01	
o : 0.39	c : 0.13	m : 0.13	n : 0.11	d : 0.09	e : 0.05	l : 0.03	r : 0.01	g : 0.01	
o : 0.41	n : 0.16	m : 0.13	c : 0.09	d : 0.05	e : 0.05	l : 0.03	r : 0.01	g : 0.01	
o : 0.41	m : 0.28	n : 0.16	l : 0.03	e : 0.03	r : 0.01	d : 0.01	c : 0.01	
o : 0.41	m : 0.28	n : 0.16	l : 0.07	d : 0.03	r : 0.01	
o : 0.41	m : 0.15	n : 0.15	d : 0.09	l : 0.07	a : 0.03	c : 0.03	e : 0.01	r : 0.01	
o : 0.37	d : 0.18	m : 0.15	l : 0.07	n : 0.05	e : 0.03	2 : 0.03	c : 0.03	r : 0.01	a : 0.01	
d : 0.35	c : 0.30	e : 0.09	b : 0.07	2 : 0.05	f : 0.03	r : 0.01	a : 0.01	o : 0.01	g : 0.01	
d : 0.33	c : 0.30	b : 0.11	e : 0.09	2 : 0.05	f : 0.03	] : 0.01	g : 0.01	3 : 0.01	
c : 0.30	d : 0.28	] : 0.09	e : 0.09	b : 0.05	2 : 0.05	f : 0.03	g : 0.03	4 : 0.01	3 : 0.01	
d : 0.26	2 : 0.18	e : 0.09	3 : 0.09	a : 0.09	c : 0.07	f : 0.05	] : 0.05	g : 0.03	b : 0.01	4 : 0.01	
] : 0.24	2 : 0.20	3 : 0.11	c : 0.11	d : 0.09	e : 0.07	f : 0.05	g : 0.05	4 : 0.03	
c : 0.24	d : 0.18	b : 0.15	3 : 0.11	a : 0.07	f : 0.05	g : 0.05	4 : 0.03	2 : 0.03	e : 0.01	] : 0.01	
c : 0.26	d : 0.20	b : 0.15	e : 0.09	3 : 0.05	2 : 0.05	g : 0.05	f : 0.03	4 : 0.03	a : 0.01	] : 0.01	
] : 0.24	c : 0.20	d : 0.13	e : 0.11	2 : 0.11	a : 0.05	f : 0.03	4 : 0.03	g : 0.03	3 : 0.01	
c : 0.20	e : 0.13	d : 0.13	2 : 0.11	= : 0.09	g : 0.09	f : 0.07	] : 0.05	: : 0.01	3 : 0.01	4 : 0.01	b : 0.01	a : 0.01	
c : 0.18	e : 0.15	] : 0.13	= : 0.09	2 : 0.09	g : 0.09	d : 0.07	f : 0.07	b : 0.03	3 : 0.01	4 : 0.01	a : 0.01	
c : 0.20	e : 0.15	i : 0.11	g : 0.11	= : 0.09	f : 0.09	d : 0.07	2 : 0.05	b : 0.03	] : 0.01	3 : 0.01	: : 0.01	
] : 0.20	i : 0.11	e : 0.11	= : 0.09	g : 0.09	f : 0.09	d : 0.07	c : 0.07	b : 0.05	2 : 0.05	3 : 0.01	
d : 0.13	e : 0.13	c : 0.13	i : 0.11	g : 0.11	= : 0.09	f : 0.07	a : 0.05	b : 0.05	2 : 0.05	4 : 0.01	] : 0.01	
e : 0.11	i : 0.11	g : 0.11	d : 0.09	= : 0.09	c : 0.09	f : 0.09	] : 0.07	2 : 0.05	[ : 0.03	4 : 0.03	5 : 0.01	h : 0.01	3 : 0.01	b : 0.01	
d : 0.13	e : 0.13	c : 0.13	i : 0.11	g : 0.11	= : 0.09	] : 0.07	f : 0.05	2 : 0.03	4 : 0.03	b : 0.01	5 : 0.01	h : 0.01	3 : 0.01	
d : 0.18	e : 0.15	] : 0.15	i : 0.11	= : 0.09	c : 0.07	g : 0.05	4 : 0.03	3 : 0.03	f : 0.03	b : 0.01	5 : 0.01	h : 0.01	
d : 0.13	i : 0.13	c : 0.13	e : 0.11	= : 0.09	a : 0.07	g : 0.07	] : 0.05	f : 0.05	: : 0.03	b : 0.01	3 : 0.01	5 : 0.01	h : 0.01	4 : 0.01	

#score	695.008082547039
#seq	53
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_CDS_m3_run2.txt

#BEAR
$$$$$ddddrrrrrrrrrdddd22dddd	chr16:1816569-1816832(+)$1	263	70	98	12.5806
fff"""ddddpppppppdddd333ffff	chr2:178081364-178081634(+)$1	270	20	48	16.2889
ccc[ccccccpppppppccc]ccc]ccc	chr16:56969168-56969505(+)$1	337	16	44	16.6813
ddd!!eeeeepppppppeeeee22dddd	chr2:97278170-97278428(-)$1	258	144	172	15.7665
ggg!!eeeeepppppppeeeee]ggggg	chr12:46757382-46757647(-)$1	265	63	91	16.4737
fffffeeeeepppppppeeeee::dddd	chr2:203152324-203152609(+)$1	285	223	251	12.9179
c####cccrrrrrrrrrccc22cccfff	chr17:48560969-48561250(+)$1	281	173	201	13.2194
[a"""eeeeepppppppeeeeeaggggg	chrX:153587913-153588148(-)$1	235	200	228	16.5636
bb[cccbbbbpppppppbb]bb]cccbb	chr1:228333562-228333922(+)$1	360	214	242	13.2100
[bb[ddddrrrrrrrrrdddd22bb]hh	chr8:21938246-21938470(+)$1	224	187	215	11.7698
:ccc!!ddddpppppppdddd22ccc::	chr17:78310110-78310370(+)$1	260	29	57	14.0932
dd[ccc[cccpppppppcccccc]dddd	chr8:145667215-145667541(-)$1	326	208	236	16.0603
eeeee[ddddpppppppddddeeeee::	chr12:48359702-48359983(+)$1	281	81	109	13.3808
[iiiiiiiiipppppppiiiiiiiiicc	chr11:87024317-87024612(+)$1	295	265	293	16.3101
hhhhh[ddddpppppppdddd]hhhhhh	chr1:47765446-47765758(-)$1	312	132	160	14.4656
a[eeeee[bbpppppppbb]eeeee]aF	chr1:45269655-45269961(+)$1	306	266	294	13.8679
cc!!ffffffpppppppffffff22ccc	chr8:145065690-145065976(+)$1	286	123	151	15.1325
ee####cccrrrrrrrrrccc22eeeee	chr1:32687978-32688252(+)$1	274	189	217	13.0735
eeeee[ddddpppppppdddd]eeeee:	chr2:32626394-32626709(+)$1	315	20	48	14.3527
[dddd"""bbpppppppbb22dddd]dd	chr12:56641253-56641546(-)$1	293	202	230	13.5511
ccc[bb[cccpppppppcccbb]ccc44	chr16:70288264-70288505(-)$1	241	135	163	15.5671
==========ppppppp===========	chr8:145623232-145623489(-)$1	257	4	32	16.6532
gggggg[bbrrrrrrrrrbb]ggggggg	chr1:100602464-100602713(+)$1	249	213	241	12.3989
[ccc"""bbrrrrrrrrrbb333ccc]b	chr11:62650356-62650615(+)$1	259	159	187	12.9076
ddd!!addddpppppppdddd]a22ddd	chr1:154213880-154214126(+)$1	246	32	60	16.2103
"""ddddcccpppppppccc333dddd4	chr11:117110459-117110728(+)$1	269	121	149	16.5913
gggggg!!bbpppppppbb22ggggggg	chr21:46916863-46917094(+)$1	231	41	69	14.9747
ddd[ffffffpppppppffffffdddd2	chr16:2012807-2013053(-)$1	246	47	75	13.9581
bb[bb!!cccpppppppccc22bb]bb]	chr12:123004888-123005168(-)$1	280	120	148	14.4817
&&&&&eeeeepppppppeeeee333===	chr8:38161985-38162224(-)$1	239	75	103	13.9929
$$$ccc[cccpppppppccccccccc]f	chr10:96356598-96357034(+)$1	436	396	424	16.0287
i[a[ffffffpppppppffffff]a]ii	chr20:49571582-49571867(-)$1	285	167	195	15.0772
cc####ddddpppppppdddd22ccccc	chr7:2411357-2411674(+)$1	317	145	173	16.9296
gggggggcccpppppppccc22gggggg	chr3:49462193-49462481(-)$1	288	117	145	16.4248
$$$$ffffffpppppppffffff333bb	chr2:48065863-48066152(-)$1	289	251	279	14.4386
dd[dddd[arrrrrrrrra]dddd]ddd	chr8:30954203-30954499(+)$1	296	93	121	11.5547
""hhhhhhhhppppppphhhhhhhhccc	chr3:49759196-49759467(-)$1	271	99	127	13.5821
gg[a[eeeeepppppppeeeee333a]g	chr1:19570309-19570605(-)$1	296	217	245	16.6319
g[a[ddddrrrrrrrrrdddd]a]gggg	chr9:130982101-130982367(+)$1	266	132	160	13.4651
"ccc!!ddddpppppppddddccc6666	chr7:128489912-128490161(+)$1	249	150	178	14.5622
ddd!!a[cccpppppppccc]a]dddd:	chr6:33169360-33169645(+)$1	285	241	269	15.6899
###gggggggpppppppgggggggdddd	chr12:6978144-6978410(+)$1	266	20	48	15.8664
c####eeeeepppppppeeeee333ccc	chr17:27075125-27075417(+)$1	292	134	162	17.0416
[ccc[ddddrrrrrrrrrdddd]cccdd	chr12:132399856-132400088(+)$1	232	188	216	13.2434
eeeee[ddddpppppppdddd]eeeee:	chr19:6421193-6421431(-)$1	238	79	107	14.3527
gggggg[cccpppppppccc]ggggggg	chr1:182845926-182846177(+)$1	251	109	137	16.6829
!ccc[cccrrrrrrrrrcccccc22ddd	chr16:67574323-67574583(+)$1	260	159	187	13.1186
eee[ddddrrrrrrrrrdddd22eeeee	chr8:23425778-23426047(+)$1	269	11	39	12.3084
ddd[a[ddddpppppppdddd]a]dddd	chr11:208995-209276(+)$1	281	87	115	16.1771
:iiiiiiiiipppppppiiiiiiiii::	chr12:57922294-57922627(+)$1	333	254	282	13.5181
'iiiiiiiiipppppppiiiiiiiiiaa	chr12:51402072-51402395(-)$1	323	197	225	15.5877
gggggg[bbrrrrrrrrrbb]ggggggg	chr17:17720329-17720636(-)$1	307	113	141	12.3989
fff[bb[cccpppppppccc]bb333ff	chr16:89871497-89871818(-)$1	321	19	47	15.2659
!!ccceeeeepppppppeeeee]ccc]e	chr4:48533030-48533308(-)$1	278	232	260	16.1018
iii[ccccccpppppppccc]ccc]iii	chr21:40720158-40720377(-)$1	219	102	130	16.7323
"""a"""cccpppppppccc4444a333	chr15:65114466-65114742(-)$1	276	154	182	17.2259
!!a!!eeeeepppppppeeeeea22ccc	chr19:39949670-39949948(+)$1	278	161	189	16.6983

#otherMatches

#Seq PSSM
AGAACGGCUGGUAGGAAGGGCCCGGGGC	chr16:1816569-1816832(+)$1	263	70	98	12.5806
UCCCUUGCCUGUAUUAAAGGUCGUGGAG	chr2:178081364-178081634(+)$1	270	20	48	16.2889
GUUGUUGGAUCACCAAUGUCUCAGGGAC	chr16:56969168-56969505(+)$1	337	16	44	16.6813
CCCAUCUGCUGAACAAUGGCAGUGGGGU	chr2:97278170-97278428(-)$1	258	144	172	15.7665
GUGUCCAAGAUUUCAUUUUUUGCUAUGU	chr12:46757382-46757647(-)$1	265	63	91	16.4737
AAGGAggccaggugugguggcucaagcc	chr2:203152324-203152609(+)$1	285	223	251	12.9179
ACACCACUCCCUCCUAAAGUCUUGCAGA	chr17:48560969-48561250(+)$1	281	173	201	13.2194
UGACCGAGGGCUGCGACCCCUCCCGGGU	chrX:153587913-153588148(-)$1	235	200	228	16.5636
GGUGGGGCCCUAUGGCUGGAGCACCCCC	chr1:228333562-228333922(+)$1	360	214	242	13.2100
GCCAGGCAAGUGGAAUGUGCUGCGGGGU	chr8:21938246-21938470(+)$1	224	187	215	11.7698
AAGGCUCUGGAUAAGGACCAGUACCUGC	chr17:78310110-78310370(+)$1	260	29	57	14.0932
GGGCUCUCUCCCUCACAGAGGAGGCCUG	chr8:145667215-145667541(-)$1	326	208	236	16.0603
AGCCUUAGGGUUUCAUUCCCUGGGUUGU	chr12:48359702-48359983(+)$1	281	81	109	13.3808
AUGAAUUGGAAAUACCAUCCAAUUCAUC	chr11:87024317-87024612(+)$1	295	265	293	16.3101
UUGAGCAGUAAUCUGAAUAUUUCUCAAG	chr1:47765446-47765758(-)$1	312	132	160	14.4656
AGGGUGGGGUCUGGUACAUGCUGCUGUG	chr1:45269655-45269961(+)$1	306	266	294	13.8679
GGGAGGUGCUUGUGAGUGGCGCUGACCC	chr8:145065690-145065976(+)$1	286	123	151	15.1325
GUCCAUUACGCAGAUUAAGUAUAACCGC	chr1:32687978-32688252(+)$1	274	189	217	13.0735
GGAAAGAUCUGCAUAUGGGAUGUUUCCA	chr2:32626394-32626709(+)$1	315	20	48	14.3527
UGCUGCUAGAGAAAGGAUCCACAGCUGA	chr12:56641253-56641546(-)$1	293	202	230	13.5511
CCAUGGAUCCUGUCCUUGGACCCUGGAC	chr16:70288264-70288505(-)$1	241	135	163	15.5671
UCCGCCUGCUGGAAGGAGGUAGGUGGGU	chr8:145623232-145623489(-)$1	257	4	32	16.6532
UGGUAUGUAAUGCCUUGGUAGAugcugc	chr1:100602464-100602713(+)$1	249	213	241	12.3989
UGGGACAGUCCUUUCACAGCAAGCCCUG	chr11:62650356-62650615(+)$1	259	159	187	12.9076
ACAUUGAUGUUUUCUAUACAUGCUUUGU	chr1:154213880-154214126(+)$1	246	32	60	16.2103
GUAUUUAAACUGUCCUUGUUAUAUGAAG	chr11:117110459-117110728(+)$1	269	121	149	16.5913
GUGGUGGCCUCCAUUUCAGAACAUCGCC	chr21:46916863-46917094(+)$1	231	41	69	14.9747
GUGGCCUCUCUUUCCUUGAGGGGUGCAA	chr16:2012807-2013053(-)$1	246	47	75	13.9581
AACUAUUAGUCAUUCAAACUCCUAUUUC	chr12:123004888-123005168(-)$1	280	120	148	14.4817
AUUCUUCUGCUGUAAAUGUAGGCUUUUG	chr8:38161985-38162224(-)$1	239	75	103	13.9929
UUAGAGUAUUAAAAUCAAAUCUCAGACA	chr10:96356598-96357034(+)$1	436	396	424	16.0287
UGUGAUAUGAAUUGUGAUUAUGUAGGGG	chr20:49571582-49571867(-)$1	285	167	195	15.0772
ACUUUGAGGCGAAUGGGGCCUACGUGCU	chr7:2411357-2411674(+)$1	317	145	173	16.9296
UCUGCUUGGCUUGCUUUGCCCUGAGCAG	chr3:49462193-49462481(-)$1	288	117	145	16.4248
ACAAUUAGUUGGAACAAAAUUAAAAUGC	chr2:48065863-48066152(-)$1	289	251	279	14.4386
AUUGUAUACGUAACUCCAGAAUACUGUU	chr8:30954203-30954499(+)$1	296	93	121	11.5547
GAGGGGCGGGGAGUGUGCCUGCCUCCCU	chr3:49759196-49759467(-)$1	271	99	127	13.5821
UGGCUCCUUGAUCUGUACAGGGUCUGGU	chr1:19570309-19570605(-)$1	296	217	245	16.6319
AGCUGUAGACGGCCCUCCUGCUGGUGCA	chr9:130982101-130982367(+)$1	266	132	160	13.4651
UCUGAAGUGCCACAGCUGCGCCAGCCCU	chr7:128489912-128490161(+)$1	249	150	178	14.5622
GCAUCGCUCUCUACUUCAGAUCUUGCUC	chr6:33169360-33169645(+)$1	285	241	269	15.6899
GGAGAGGGGUGUGUGGGACCCUUCCCUC	chr12:6978144-6978410(+)$1	266	20	48	15.8664
AGCACCUCUGACAUUUCCAGAGCCAUGA	chr17:27075125-27075417(+)$1	292	134	162	17.0416
GCUCUUUCCAAGUGAAAAGGAGUGGGAA	chr12:132399856-132400088(+)$1	232	188	216	13.2434
UUGCUUUGGGUUUUCUCUCUACAGCAAU	chr19:6421193-6421431(-)$1	238	79	107	14.3527
CAAGUAAGUUACUGGGAAACCUAUUUGU	chr1:182845926-182846177(+)$1	251	109	137	16.6829
UCUGCAUGAAAUAUGGGCGUCAGCGCUG	chr16:67574323-67574583(+)$1	260	159	187	13.1186
GAACACCCGAUCGCAGAGGGUAAUUUUC	chr8:23425778-23426047(+)$1	269	11	39	12.3084
GCAGUGUUGCGGGGAGAGUGGGGGUGCA	chr11:208995-209276(+)$1	281	87	115	16.1771
GGUUUGGACAGUUCUAAUGUCCAAAUAG	chr12:57922294-57922627(+)$1	333	254	282	13.5181
UCUGCUGGAUGGCUCAAGUUCAGCAGCC	chr12:51402072-51402395(-)$1	323	197	225	15.5877
AGCCCCCAGGCUUGUGAACUUGGGGCUC	chr17:17720329-17720636(-)$1	307	113	141	12.3989
CAUCCCGACAUGCAUGCUGUGGGAUCGU	chr16:89871497-89871818(-)$1	321	19	47	15.2659
cccaguguuagacaauaugauagcuguu	chr4:48533030-48533308(-)$1	278	232	260	16.1018
UGCCUUUCAGAAACCUCCUGCAAAAGUG	chr21:40720158-40720377(-)$1	219	102	130	16.7323
ACAGGGAAGUCAUAUCUGCUAAAGCGAA	chr15:65114466-65114742(-)$1	276	154	182	17.2259
GAGGAUCUGAUGAGCUCUCAGACGACAU	chr19:39949670-39949948(+)$1	278	161	189	16.6983

#DB
.....((((.........))))..))))	chr16:1816569-1816832(+)$1	1	70	98	12.5806
(((...((((.......))))...))))	chr2:178081364-178081634(+)$1	1	20	48	16.2889
(((.((((((.......))).))).)))	chr16:56969168-56969505(+)$1	1	16	44	16.6813
(((..(((((.......)))))..))))	chr2:97278170-97278428(-)$1	1	144	172	15.7665
(((..(((((.......))))).)))))	chr12:46757382-46757647(-)$1	1	63	91	16.4737
)))))(((((.......)))))..((((	chr2:203152324-203152609(+)$1	1	223	251	12.9179
(....(((.........)))..))))))	chr17:48560969-48561250(+)$1	1	173	201	13.2194
.(...(((((.......)))))))))))	chrX:153587913-153588148(-)$1	1	200	228	16.5636
((.(((((((.......)).)).)))))	chr1:228333562-228333922(+)$1	1	214	242	13.2100
.((.((((.........))))..)).))	chr8:21938246-21938470(+)$1	1	187	215	11.7698
.(((..((((.......))))..)))..	chr17:78310110-78310370(+)$1	1	29	57	14.0932
((.(((.(((.......)))))).))))	chr8:145667215-145667541(-)$1	1	208	236	16.0603
(((((.((((.......)))))))))..	chr12:48359702-48359983(+)$1	1	81	109	13.3808
.(((((((((.......)))))))))))	chr11:87024317-87024612(+)$1	1	265	293	16.3101
(((((.((((.......)))).))))))	chr1:47765446-47765758(-)$1	1	132	160	14.4656
(.(((((.((.......)).))))).))	chr1:45269655-45269961(+)$1	1	266	294	13.8679
((..((((((.......))))))..)))	chr8:145065690-145065976(+)$1	1	123	151	15.1325
((....(((.........)))..)))))	chr1:32687978-32688252(+)$1	1	189	217	13.0735
(((((.((((.......)))).))))).	chr2:32626394-32626709(+)$1	1	20	48	14.3527
.((((...((.......))..)))).))	chr12:56641253-56641546(-)$1	1	202	230	13.5511
(((.((.(((.......))))).)))..	chr16:70288264-70288505(-)$1	1	135	163	15.5671
((((((((((.......)))))))))))	chr8:145623232-145623489(-)$1	1	4	32	16.6532
((((((.((.........)).)))))))	chr1:100602464-100602713(+)$1	1	213	241	12.3989
.(((...((.........))...))).)	chr11:62650356-62650615(+)$1	1	159	187	12.9076
(((..(((((.......)))).)..)))	chr1:154213880-154214126(+)$1	1	32	60	16.2103
...(((((((.......)))...)))).	chr11:117110459-117110728(+)$1	1	121	149	16.5913
((((((..((.......))..)))))))	chr21:46916863-46917094(+)$1	1	41	69	14.9747
(((.((((((.......)))))))))).	chr16:2012807-2013053(-)$1	1	47	75	13.9581
((.((..(((.......)))..)).)).	chr12:123004888-123005168(-)$1	1	120	148	14.4817
.....(((((.......)))))...)))	chr8:38161985-38162224(-)$1	1	75	103	13.9929
...(((.(((.......))))))))).)	chr10:96356598-96357034(+)$1	1	396	424	16.0287
(.(.((((((.......)))))).).))	chr20:49571582-49571867(-)$1	1	167	195	15.0772
((....((((.......))))..)))))	chr7:2411357-2411674(+)$1	1	145	173	16.9296
((((((((((.......)))..))))))	chr3:49462193-49462481(-)$1	1	117	145	16.4248
....((((((.......))))))...))	chr2:48065863-48066152(-)$1	1	251	279	14.4386
((.((((.(.........).)))).)))	chr8:30954203-30954499(+)$1	1	93	121	11.5547
..((((((((.......)))))))))))	chr3:49759196-49759467(-)$1	1	99	127	13.5821
((.(.(((((.......)))))...).)	chr1:19570309-19570605(-)$1	1	217	245	16.6319
(.(.((((.........)))).).))))	chr9:130982101-130982367(+)$1	1	132	160	13.4651
.(((..((((.......)))))))....	chr7:128489912-128490161(+)$1	1	150	178	14.5622
(((..(.(((.......))).).)))).	chr6:33169360-33169645(+)$1	1	241	269	15.6899
...(((((((.......)))))))))))	chr12:6978144-6978410(+)$1	1	20	48	15.8664
(....(((((.......)))))...)))	chr17:27075125-27075417(+)$1	1	134	162	17.0416
.(((.((((.........)))).)))))	chr12:132399856-132400088(+)$1	1	188	216	13.2434
(((((.((((.......)))).))))).	chr19:6421193-6421431(-)$1	1	79	107	14.3527
((((((.(((.......))).)))))))	chr1:182845926-182846177(+)$1	1	109	137	16.6829
.(((.(((.........))))))..)))	chr16:67574323-67574583(+)$1	1	159	187	13.1186
(((.((((.........))))..)))))	chr8:23425778-23426047(+)$1	1	11	39	12.3084
(((.(.((((.......)))).).))))	chr11:208995-209276(+)$1	1	87	115	16.1771
.(((((((((.......)))))))))..	chr12:57922294-57922627(+)$1	1	254	282	13.5181
.(((((((((.......)))))))))))	chr12:51402072-51402395(-)$1	1	197	225	15.5877
((((((.((.........)).)))))))	chr17:17720329-17720636(-)$1	1	113	141	12.3989
(((.((.(((.......))).))...))	chr16:89871497-89871818(-)$1	1	19	47	15.2659
..((((((((.......))))).))).)	chr4:48533030-48533308(-)$1	1	232	260	16.1018
(((.((((((.......))).))).)))	chr21:40720158-40720377(-)$1	1	102	130	16.7323
...(...(((.......)))....)...	chr15:65114466-65114742(-)$1	1	154	182	17.2259
..(..(((((.......))))))..)))	chr19:39949670-39949948(+)$1	1	161	189	16.6983

#PSSM
g : 0.14	d : 0.12	c : 0.10	[ : 0.10	e : 0.08	" : 0.07	$ : 0.05	f : 0.05	! : 0.05	b : 0.03	: : 0.03	i : 0.03	h : 0.01	a : 0.01	= : 0.01	& : 0.01	# : 0.01	' : 0.01	
c : 0.15	d : 0.14	g : 0.12	e : 0.08	i : 0.07	$ : 0.05	f : 0.05	# : 0.05	b : 0.05	[ : 0.05	" : 0.05	! : 0.03	a : 0.01	h : 0.01	= : 0.01	& : 0.01	
c : 0.14	d : 0.10	g : 0.10	# : 0.08	[ : 0.08	e : 0.08	i : 0.07	$ : 0.05	f : 0.05	" : 0.05	a : 0.05	h : 0.03	b : 0.01	! : 0.01	= : 0.01	& : 0.01	
[ : 0.17	c : 0.15	! : 0.10	g : 0.10	# : 0.07	e : 0.07	i : 0.05	d : 0.05	$ : 0.03	" : 0.03	h : 0.03	a : 0.03	f : 0.01	= : 0.01	b : 0.01	& : 0.01	
! : 0.12	c : 0.10	d : 0.10	g : 0.10	f : 0.08	" : 0.07	# : 0.07	e : 0.07	i : 0.05	b : 0.05	[ : 0.05	h : 0.03	$ : 0.01	= : 0.01	& : 0.01	a : 0.01	
e : 0.17	d : 0.12	c : 0.12	g : 0.10	[ : 0.08	" : 0.07	f : 0.07	! : 0.05	i : 0.05	# : 0.03	b : 0.03	a : 0.03	= : 0.01	h : 0.01	
d : 0.29	e : 0.17	[ : 0.14	c : 0.08	f : 0.07	i : 0.05	" : 0.05	! : 0.03	g : 0.03	b : 0.01	= : 0.01	h : 0.01	
d : 0.26	c : 0.26	e : 0.15	b : 0.07	f : 0.07	i : 0.05	[ : 0.03	" : 0.01	= : 0.01	! : 0.01	h : 0.01	g : 0.01	
c : 0.22	d : 0.21	e : 0.15	b : 0.12	r : 0.08	f : 0.07	i : 0.05	= : 0.01	a : 0.01	h : 0.01	g : 0.01	
r : 0.21	c : 0.21	d : 0.17	e : 0.15	b : 0.07	f : 0.07	i : 0.05	= : 0.01	h : 0.01	g : 0.01	
p : 0.78	r : 0.21	
p : 0.78	r : 0.21	
p : 0.78	r : 0.21	
p : 0.78	r : 0.21	
p : 0.78	r : 0.21	
p : 0.78	r : 0.21	
p : 0.78	r : 0.21	
c : 0.24	d : 0.22	e : 0.15	r : 0.12	b : 0.07	f : 0.07	i : 0.05	= : 0.01	h : 0.01	g : 0.01	
d : 0.26	c : 0.26	e : 0.15	b : 0.12	f : 0.07	i : 0.05	= : 0.01	a : 0.01	h : 0.01	g : 0.01	
d : 0.26	c : 0.26	e : 0.15	f : 0.07	] : 0.05	i : 0.05	b : 0.05	2 : 0.03	= : 0.01	h : 0.01	g : 0.01	
d : 0.28	e : 0.17	] : 0.12	2 : 0.08	c : 0.07	f : 0.07	i : 0.05	b : 0.03	3 : 0.03	= : 0.01	h : 0.01	g : 0.01	4 : 0.01	
e : 0.19	2 : 0.14	c : 0.10	] : 0.10	g : 0.08	d : 0.07	f : 0.07	3 : 0.05	b : 0.05	i : 0.05	= : 0.01	h : 0.01	a : 0.01	4 : 0.01	
2 : 0.12	c : 0.12	3 : 0.10	] : 0.10	g : 0.10	a : 0.08	e : 0.07	f : 0.07	i : 0.05	h : 0.03	d : 0.03	b : 0.03	: : 0.01	= : 0.01	4 : 0.01	
c : 0.21	g : 0.14	2 : 0.10	3 : 0.10	e : 0.10	d : 0.08	] : 0.07	i : 0.05	b : 0.03	h : 0.03	: : 0.01	= : 0.01	4 : 0.01	
d : 0.17	c : 0.15	g : 0.14	e : 0.10	3 : 0.08	] : 0.07	2 : 0.07	i : 0.05	h : 0.03	a : 0.03	f : 0.01	b : 0.01	= : 0.01	6 : 0.01	
c : 0.22	d : 0.21	g : 0.14	e : 0.08	] : 0.07	i : 0.07	3 : 0.05	f : 0.03	= : 0.03	h : 0.01	b : 0.01	a : 0.01	6 : 0.01	
d : 0.24	g : 0.14	c : 0.12	e : 0.07	] : 0.07	f : 0.05	b : 0.05	: : 0.05	h : 0.03	a : 0.03	= : 0.03	i : 0.03	4 : 0.01	6 : 0.01	3 : 0.01	
d : 0.19	g : 0.15	c : 0.12	: : 0.10	f : 0.07	b : 0.05	e : 0.05	h : 0.03	4 : 0.03	= : 0.03	i : 0.03	F : 0.01	2 : 0.01	] : 0.01	6 : 0.01	a : 0.01	3 : 0.01	

#score	844.2025673540865
#seq	57
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_transcript_m1_run2.txt

#BEAR
"gggggggwwwwwwwwwwwwwwgggggg	chr2:111924621-111924868(+)$1	247	35	63	24.1553
eeeeeeeeevvvvvvvvvvvvveeeee:	chr14:35519279-35519551(+)$1	272	91	119	22.9777
iiiiiiiiiuuuuuuuuuuuuiiiiiii	chr19:811986-812191(+)$1	205	23	51	24.4903
:eeeeeccctttttttttttccc]eeee	chrX:118378171-118378420(+)$1	249	153	181	21.7453
i[a[eeeeeuuuuuuuuuuuueeeee22	chr21:16334072-16334316(-)$1	244	144	172	24.7175
bb[ffffffvvvvvvvvvvvvvffffff	chr5:145668436-145668684(+)$1	248	164	192	24.2037
iiii"""bbuuuuuuuuuuuubb4444i	chr5:43526414-43526674(-)$1	260	105	133	23.0156
:gggggggvvvvvvvvvvvvvggggggg	chr11:107661634-107661928(-)$1	294	19	47	23.7516
Fgggggggxxxxxxxxxxxxxxxggggg	chr19:2233148-2233454(-)$1	306	262	290	19.0701
dd"""ddddvvvvvvvvvvvvvdddd33	chr9:74969492-74969751(-)$1	259	168	196	23.5202
"""ffffffvvvvvvvvvvvvvffffff	chr7:66421254-66421487(+)$1	233	89	117	24.7373
C:ffffffvvvvvvvvvvvvvffffffi	chr1:193055167-193055425(+)$1	258	185	213	22.5115
:ccc[dddduuuuuuuuuuuuddddccc	chr17:75210052-75210288(+)$1	236	106	134	22.8124
eeee[bbwwwwwwwwwwwwwwbb]eeee	chr1:45101601-45101860(+)$1	259	178	206	21.9664
[gggggggxxxxxxxxxxxxxxxggggg	chr6:75965318-75965576(-)$1	258	24	52	19.4781
e!!a[ddddtttttttttttdddd]aee	chr11:61919557-61919822(+)$1	265	96	124	21.9078
CC:eeeeevvvvvvvvvvvvveeeee==	chr8:27316369-27316634(+)$1	265	14	42	21.5323
ee[gggggggtttttttttttggggggg	chr9:96441325-96441617(+)$1	292	62	90	22.6311
ccc[cccxxxxxxxxxxxxxxxccc]cc	chr12:69784396-69784662(+)$1	266	170	198	18.6753
c"""eeeeeuuuuuuuuuuuueeeee55	chr7:75615972-75616227(+)$1	255	173	201	23.4289
dd[ddddawwwwwwwwwwwwwwa]dddd	chr19:16243238-16243518(+)$1	280	161	189	22.3478
%%ffffffvvvvvvvvvvvvvffffff4	chr2:70169798-70170049(+)$1	251	107	135	23.2258
=========vvvvvvvvvvvvv======	chr2:175936979-175937245(-)$1	266	186	214	24.7920
d!!gggggggtttttttttttggggggg	chr3:167726422-167726687(-)$1	265	39	67	22.9375
eee!!bbwwwwwwwwwwwwwwbb22eee	chr5:180004772-180005040(+)$1	268	124	152	21.4324
ii[ffffffwwwwwwwwwwwwwwfffff	chr10:17757671-17757945(+)$1	274	227	255	23.7258
b!!ddddyyyyyyyyyyyyyyyydddd2	chr3:167401793-167402056(-)$1	263	128	156	21.0778
Cffffffbbuuuuuuuuuuuubb]ffff	chr2:47387610-47387875(-)$1	265	50	78	22.7941
""bb[awwwwwwwwwwwwwwabb333ee	chr1:95657981-95658281(+)$1	300	161	189	20.8905
==========ttttttttttt=======	chr21:43408284-43408561(-)$1	277	182	210	23.1894
cc[ffffffvvvvvvvvvvvvvffffff	chr4:175238448-175238695(+)$1	247	138	166	24.4760
::eeeeewwwwwwwwwwwwwweeeee::	chr18:54269955-54270226(-)$1	271	107	135	19.7105
f[bb!!cccwwwwwwwwwwwwwwccc22	chr5:71515270-71515512(-)$1	242	45	73	22.6413
"""eeeeevvvvvvvvvvvvveeeee44	chr6:133110826-133111084(-)$1	258	110	138	24.7208
[ffffffyyyyyyyyyyyyyyyyfffff	chr1:6582153-6582420(-)$1	267	6	34	21.9660
fffffddddtttttttttttdddd]fff	chr14:35870647-35870941(-)$1	294	129	157	21.6468
###ffffffvvvvvvvvvvvvvffffff	chr10:70931111-70931355(+)$1	244	135	163	24.6528
d!!ffffffuuuuuuuuuuuuffffff]	chr11:770111-770387(-)$1	276	84	112	24.7997
h[bb[dddduuuuuuuuuuuuddddbb2	chr14:75598201-75598432(-)$1	231	193	221	22.5856
b[ffffffxxxxxxxxxxxxxxxfffff	chr17:72764752-72764977(+)$1	225	4	32	19.2814
giiiiiiiiitttttttttttiiiiiii	chr15:44063546-44063787(+)$1	241	51	79	22.4636
b!!ffffffuuuuuuuuuuuuffffff3	chr6:24786163-24786387(+)$1	224	112	140	24.9401
ggg:eeeeevvvvvvvvvvvvveeeeec	chr3:73117583-73117820(+)$1	237	69	97	23.2431
iiiiiiiiiuuuuuuuuuuuuiiiiiii	chr5:59893100-59893450(-)$1	350	28	56	24.4903
''eeeeewwwwwwwwwwwwwweeeeeff	chr8:99964036-99964349(+)$1	313	61	89	22.2646
iiiiiii[auuuuuuuuuuuua]iiiii	chr4:89647803-89648065(-)$1	262	10	38	24.7485
fffff[ccctttttttttttccc]ffff	chr2:152670674-152670900(-)$1	226	56	84	22.6093
:ffffffyyyyyyyyyyyyyyyyfffff	chr1:109606993-109607237(-)$1	244	103	131	21.2422
dd"""dddduuuuuuuuuuuudddd333	chr14:23612187-23612438(-)$1	251	155	183	23.7226
:::ffffffvvvvvvvvvvvvvffffff	chr1:2239241-2239516(+)$1	275	107	135	21.8285
f::ffffffuuuuuuuuuuuuffffff:	chr3:45541855-45542122(+)$1	267	163	191	21.5829
[bb[eeeeeuuuuuuuuuuuueeeee]b	chr1:19443663-19443901(-)$1	238	62	90	24.1302
c[bbddddvvvvvvvvvvvvvdddd]bb	chr3:10192126-10192395(+)$1	269	230	258	22.5025
]ccceeeeevvvvvvvvvvvvveeeee:	chr22:50167741-50167990(-)$1	249	178	206	23.0374
i[a[eeeeeuuuuuuuuuuuueeeee22	chr21:16333934-16334194(-)$1	260	22	50	24.7175
hhhhh[cccuuuuuuuuuuuuccchhhh	chr12:118582575-118582835(+)$1	260	43	71	22.3472
"iiiiiiiiitttttttttttiiiiiii	chr1:1683502-1683755(-)$1	253	102	130	22.5779
$$$ffffffuuuuuuuuuuuuffffff2	chr2:16734026-16734290(-)$1	264	44	72	24.1927
ee[gggggggtttttttttttggggggg	chr12:121201521-121201768(-)$1	247	190	218	22.6311
bb!!eeeeeuuuuuuuuuuuueeeee22	chr16:46990609-46990892(-)$1	283	200	228	24.4000
fff!!eeeeettttttttttteeeeeff	chr9:4860720-4860949(+)$1	229	131	159	22.6866
ff"""ddddwwwwwwwwwwwwwwdddd4	chr15:65953916-65954240(-)$1	324	159	187	22.4306
"gggggggvvvvvvvvvvvvvggggggg	chr12:108962967-108963191(+)$1	224	18	46	24.5183
eeeeeeeeeuuuuuuuuuuuueeeee]e	chr15:75663312-75663590(-)$1	278	142	170	24.0948
b"""ddddyyyyyyyyyyyyyyyydddd	chr6:53363358-53363620(-)$1	262	13	41	20.8215
ccc"""ccctttttttttttccc333cc	chr7:10978335-10978590(-)$1	255	71	99	22.3382

#otherMatches

#Seq PSSM
UGUAGAAAUAUUGUAUAUUUAUUUUCUG	chr2:111924621-111924868(+)$1	247	35	63	24.1553
ccuggcuaauuuuuguauuuuuuuagua	chr14:35519279-35519551(+)$1	272	91	119	22.9777
GGGUGuaaauauuuauaauuuuuuauaC	chr19:811986-812191(+)$1	205	23	51	24.4903
AAUAGUCAUUGUAUUUUCUUGUGAACUG	chrX:118378171-118378420(+)$1	249	153	181	21.7453
AGUGUAAAUAUAAUCAGACAGGUUUAAA	chr21:16334072-16334316(-)$1	244	144	172	24.7175
AUAUGUAAUGUUUGUUUUAUCAAUUACA	chr5:145668436-145668684(+)$1	248	164	192	24.2037
UUUUCCAGCUAACUAAAAACUGUGUACA	chr5:43526414-43526674(-)$1	260	105	133	23.0156
CAAAAAUCUGUAAUGCCCUGUGAUUUUU	chr11:107661634-107661928(-)$1	294	19	47	23.7516
GGGUGCUUGUUCUGUUCAAAUAAAGGUA	chr19:2233148-2233454(-)$1	306	262	290	19.0701
UACUUCUGAUUUAUUGCAAUGUUCAGUC	chr9:74969492-74969751(-)$1	259	168	196	23.5202
AAAAGGGCUUCAAAAUGUAAAUGGCUCU	chr7:66421254-66421487(+)$1	233	89	117	24.7373
UGUACAUAUUUUCUUCUGUUUUAUGUGA	chr1:193055167-193055425(+)$1	258	185	213	22.5115
AGCCAGCUGCACCCGCCCACCCAGCGGC	chr17:75210052-75210288(+)$1	236	106	134	22.8124
UGGUGUGGACAGAAGCGGAUACGGGCCA	chr1:45101601-45101860(+)$1	259	178	206	21.9664
CCACAUGAUGCAUAGAGCCUCUUUCAUG	chr6:75965318-75965576(-)$1	258	24	52	19.4781
GUGGGUGGGGAAGAAAUGGGCCCAGCCC	chr11:61919557-61919822(+)$1	265	96	124	21.9078
UUUGGGAACCAAGCUAUUCCUUUCCCUU	chr8:27316369-27316634(+)$1	265	14	42	21.5323
GAUGCUGUAAUUUAUUAAUGUUUGUAGC	chr9:96441325-96441617(+)$1	292	62	90	22.6311
ACAGAUCCUAUUUCUCCCUCCUGAUGUG	chr12:69784396-69784662(+)$1	266	170	198	18.6753
CCCUUGGAAUAAAGUUCUGUUUUCUGUA	chr7:75615972-75616227(+)$1	255	173	201	23.4289
GUGUGACCGUCGACCACAGCCAGUGUCA	chr19:16243238-16243518(+)$1	280	161	189	22.3478
UAUGACGCCAAUGUAAAUCCUGUGUCAA	chr2:70169798-70170049(+)$1	251	107	135	23.2258
AAACUGUACUAUUUUCUUUUAUGUGCAG	chr2:175936979-175937245(-)$1	266	186	214	24.7920
CCUUUAUGUAUAAAAACCCAUUAUGUAA	chr3:167726422-167726687(-)$1	265	39	67	22.9375
AUACAGGGUCUUUUUUCUUUACCGAUGU	chr5:180004772-180005040(+)$1	268	124	152	21.4324
UUUCAAAGUAAUCUACAUUCCUGGCUUU	chr10:17757671-17757945(+)$1	274	227	255	23.7258
CUUAAUCAUAAUCUCACACUGAAGAUUU	chr3:167401793-167402056(-)$1	263	128	156	21.0778
CUACUGUCAAAAAAAUAUGCAUGUAUAG	chr2:47387610-47387875(-)$1	265	50	78	22.7941
AUGCACUCUUUUCUUACUAUGGCUGUCA	chr1:95657981-95658281(+)$1	300	161	189	20.8905
AAAGAAUGUAAAAUGUUUUAAUAUAUUC	chr21:43408284-43408561(-)$1	277	182	210	23.1894
AUUUUAAGAAUUCUUUAUACAAUUUUAA	chr4:175238448-175238695(+)$1	247	138	166	24.4760
UAGUGUUUCCAUUGUAAUCUUGACACAU	chr18:54269955-54270226(-)$1	271	107	135	19.7105
UUCAGAGCAGAUUUUGCUUACUAUGUAG	chr5:71515270-71515512(-)$1	242	45	73	22.6413
UGUACAUAUUGGAGCAAAAUUUAUGUUU	chr6:133110826-133111084(-)$1	258	110	138	24.7208
uggucucgaacuuccaaccucaggggau	chr1:6582153-6582420(-)$1	267	6	34	21.9660
UGUGUUACCCUCCUGUAAAUGGUGUACA	chr14:35870647-35870941(-)$1	294	129	157	21.6468
UUUGUUAAGCUGCCUUUUUUUUUUUAAC	chr10:70931111-70931355(+)$1	244	135	163	24.6528
CAGUGAUGCACCCUGUCCUAAGCAUUGA	chr11:770111-770387(-)$1	276	84	112	24.7997
AUUCACUUGUAAAUGUUGGAUUGGGGAU	chr14:75598201-75598432(-)$1	231	193	221	22.5856
GACUGGAGCAAGAAAAACGAACUCUUCA	chr17:72764752-72764977(+)$1	225	4	32	19.2814
ACCAGGACCAGUUUAUGUUUGUGGUUUU	chr15:44063546-44063787(+)$1	241	51	79	22.4636
GAACAUUGUGUAUAACUUAGAAUAAUGA	chr6:24786163-24786387(+)$1	224	112	140	24.9401
AAAUGUUGAUUAUUAGAUAAAUUUAACC	chr3:73117583-73117820(+)$1	237	69	97	23.2431
AUUAGUAUUUUUAUAAAACUCAAUGCUA	chr5:59893100-59893450(-)$1	350	28	56	24.4903
ACUGUAGAAAGCCACACACUACUACAUC	chr8:99964036-99964349(+)$1	313	61	89	22.2646
UAAGUUUGCUCUUAAUCGUAUGGAAGCU	chr4:89647803-89648065(-)$1	262	10	38	24.7485
ACUUUUUUCCCCAGUUCUAUGAAUGAAG	chr2:152670674-152670900(-)$1	226	56	84	22.6093
AGUUUCCGAAAAUUACCAUCUGGGGAAA	chr1:109606993-109607237(-)$1	244	103	131	21.2422
GUAUCGCAGGAAAAACAGGUACUGCCCA	chr14:23612187-23612438(-)$1	251	155	183	23.7226
GUUCUGUGCCUUCCAGCAUCUUGUACAG	chr1:2239241-2239516(+)$1	275	107	135	21.8285
UAUGCAAGAUUCUUUAGUCAUUUUUGCC	chr3:45541855-45542122(+)$1	267	163	191	21.5829
GGCAGUCACACCAUCAGCAAAGUGACAG	chr1:19443663-19443901(-)$1	238	62	90	24.1302
UGCUGUUUUAUUACUGUUUCUAAACUAG	chr3:10192126-10192395(+)$1	269	230	258	22.5025
AACUUAACUUAUUCUGAUUUUUAGUUAU	chr22:50167741-50167990(-)$1	249	178	206	23.0374
AGUGUAAAUAUAAUCAGACAGGUUUAAA	chr21:16333934-16334194(-)$1	260	22	50	24.7175
UGGGGACCUGAACUGUCCUGGAGGCCCC	chr12:118582575-118582835(+)$1	260	43	71	22.3472
UUUUUAGAGACUCUUUUAAACUUUCUGA	chr1:1683502-1683755(-)$1	253	102	130	22.5779
CGAUGAAUCAACUUCCAAACAGAUUCGA	chr2:16734026-16734290(-)$1	264	44	72	24.1927
GUGAUUAUAGUCUUGGUUUACCUGUGGU	chr12:121201521-121201768(-)$1	247	190	218	22.6311
ACAUGGAUUAUUAUAAGUUUCAAUCCUG	chr16:46990609-46990892(-)$1	283	200	228	24.4000
UCUGGUUCAUUGUAUUUAUAUGUGAGGG	chr9:4860720-4860949(+)$1	229	131	159	22.6866
UAAAUGGUUCAAAAGACUCAGACAGCUU	chr15:65953916-65954240(-)$1	324	159	187	22.4306
CGUGAAGUGCAUAAGUAUCUAAUUUUAC	chr12:108962967-108963191(+)$1	224	18	46	24.5183
AUAGUACUGUGGCUUCAGAUUUAGUACC	chr15:75663312-75663590(-)$1	278	142	170	24.0948
UCAGCAUUUAGGAAAGUAAAAUAUAGUG	chr6:53363358-53363620(-)$1	262	13	41	20.8215
UCCCCCUCUUUGUAUUUAUUGGAACUGG	chr7:10978335-10978590(-)$1	255	71	99	22.3382

#DB
.(((((((..............))))))	chr2:111924621-111924868(+)$1	1	35	63	24.1553
))))(((((.............))))).	chr14:35519279-35519551(+)$1	1	91	119	22.9777
(((((((((............)))))))	chr19:811986-812191(+)$1	1	23	51	24.4903
.((((((((...........))).))))	chrX:118378171-118378420(+)$1	1	153	181	21.7453
(.(.(((((............)))))..	chr21:16334072-16334316(-)$1	1	144	172	24.7175
((.((((((.............))))))	chr5:145668436-145668684(+)$1	1	164	192	24.2037
((((...((............))....)	chr5:43526414-43526674(-)$1	1	105	133	23.0156
.(((((((.............)))))))	chr11:107661634-107661928(-)$1	1	19	47	23.7516
)(((((((...............)))))	chr19:2233148-2233454(-)$1	1	262	290	19.0701
((...((((.............))))..	chr9:74969492-74969751(-)$1	1	168	196	23.5202
...((((((.............))))))	chr7:66421254-66421487(+)$1	1	89	117	24.7373
).((((((.............))))))(	chr1:193055167-193055425(+)$1	1	185	213	22.5115
.(((.((((............)))))))	chr17:75210052-75210288(+)$1	1	106	134	22.8124
((((.((..............)).))))	chr1:45101601-45101860(+)$1	1	178	206	21.9664
.(((((((...............)))))	chr6:75965318-75965576(-)$1	1	24	52	19.4781
(..(.((((...........)))).)))	chr11:61919557-61919822(+)$1	1	96	124	21.9078
((.(((((.............)))))((	chr8:27316369-27316634(+)$1	1	14	42	21.5323
((.(((((((...........)))))))	chr9:96441325-96441617(+)$1	1	62	90	22.6311
(((.(((...............))).))	chr12:69784396-69784662(+)$1	1	170	198	18.6753
(...(((((............)))))..	chr7:75615972-75616227(+)$1	1	173	201	23.4289
((.(((((..............).))))	chr19:16243238-16243518(+)$1	1	161	189	22.3478
..((((((.............)))))).	chr2:70169798-70170049(+)$1	1	107	135	23.2258
(((((((((.............))))))	chr2:175936979-175937245(-)$1	1	186	214	24.7920
(..(((((((...........)))))))	chr3:167726422-167726687(-)$1	1	39	67	22.9375
(((..((..............))..)))	chr5:180004772-180005040(+)$1	1	124	152	21.4324
((.((((((..............)))))	chr10:17757671-17757945(+)$1	1	227	255	23.7258
(..((((................)))).	chr3:167401793-167402056(-)$1	1	128	156	21.0778
(((((((((............)).))))	chr2:47387610-47387875(-)$1	1	50	78	22.7941
..((.(..............)))...))	chr1:95657981-95658281(+)$1	1	161	189	20.8905
((((((((((...........)))))))	chr21:43408284-43408561(-)$1	1	182	210	23.1894
((.((((((.............))))))	chr4:175238448-175238695(+)$1	1	138	166	24.4760
..(((((..............)))))..	chr18:54269955-54270226(-)$1	1	107	135	19.7105
(.((..(((..............)))..	chr5:71515270-71515512(-)$1	1	45	73	22.6413
...(((((.............)))))..	chr6:133110826-133111084(-)$1	1	110	138	24.7208
.((((((................)))))	chr1:6582153-6582420(-)$1	1	6	34	21.9660
(((((((((...........)))).)))	chr14:35870647-35870941(-)$1	1	129	157	21.6468
...((((((.............))))))	chr10:70931111-70931355(+)$1	1	135	163	24.6528
(..((((((............)))))).	chr11:770111-770387(-)$1	1	84	112	24.7997
(.((.((((............)))))).	chr14:75598201-75598432(-)$1	1	193	221	22.5856
(.((((((...............)))))	chr17:72764752-72764977(+)$1	1	4	32	19.2814
)(((((((((...........)))))))	chr15:44063546-44063787(+)$1	1	51	79	22.4636
(..((((((............)))))).	chr6:24786163-24786387(+)$1	1	112	140	24.9401
))).(((((.............)))))(	chr3:73117583-73117820(+)$1	1	69	97	23.2431
(((((((((............)))))))	chr5:59893100-59893450(-)$1	1	28	56	24.4903
..(((((..............)))))))	chr8:99964036-99964349(+)$1	1	61	89	22.2646
(((((((.(............).)))))	chr4:89647803-89648065(-)$1	1	10	38	24.7485
(((((.(((...........))).))))	chr2:152670674-152670900(-)$1	1	56	84	22.6093
.((((((................)))))	chr1:109606993-109607237(-)$1	1	103	131	21.2422
((...((((............))))...	chr14:23612187-23612438(-)$1	1	155	183	23.7226
...((((((.............))))))	chr1:2239241-2239516(+)$1	1	107	135	21.8285
)..((((((............)))))).	chr3:45541855-45542122(+)$1	1	163	191	21.5829
.((.(((((............))))).)	chr1:19443663-19443901(-)$1	1	62	90	24.1302
(.((((((.............)))).))	chr3:10192126-10192395(+)$1	1	230	258	22.5025
.)))(((((.............))))).	chr22:50167741-50167990(-)$1	1	178	206	23.0374
(.(.(((((............)))))..	chr21:16333934-16334194(-)$1	1	22	50	24.7175
(((((.(((............)))))))	chr12:118582575-118582835(+)$1	1	43	71	22.3472
.(((((((((...........)))))))	chr1:1683502-1683755(-)$1	1	102	130	22.5779
...((((((............)))))).	chr2:16734026-16734290(-)$1	1	44	72	24.1927
((.(((((((...........)))))))	chr12:121201521-121201768(-)$1	1	190	218	22.6311
((..(((((............)))))..	chr16:46990609-46990892(-)$1	1	200	228	24.4000
(((..(((((...........)))))))	chr9:4860720-4860949(+)$1	1	131	159	22.6866
((...((((..............)))).	chr15:65953916-65954240(-)$1	1	159	187	22.4306
.(((((((.............)))))))	chr12:108962967-108963191(+)$1	1	18	46	24.5183
(((((((((............))))).)	chr15:75663312-75663590(-)$1	1	142	170	24.0948
(...((((................))))	chr6:53363358-53363620(-)$1	1	13	41	20.8215
(((...(((...........)))...))	chr7:10978335-10978590(-)$1	1	71	99	22.3382

#PSSM
e : 0.10	i : 0.10	" : 0.09	: : 0.09	b : 0.09	f : 0.09	d : 0.07	c : 0.07	C : 0.04	[ : 0.04	= : 0.03	h : 0.03	g : 0.03	F : 0.01	% : 0.01	# : 0.01	' : 0.01	] : 0.01	$ : 0.01	
e : 0.10	i : 0.10	f : 0.10	g : 0.09	[ : 0.09	" : 0.07	c : 0.07	! : 0.07	: : 0.06	b : 0.04	d : 0.04	= : 0.03	C : 0.01	% : 0.01	# : 0.01	' : 0.01	h : 0.01	$ : 0.01	
f : 0.13	e : 0.10	" : 0.10	g : 0.09	i : 0.09	[ : 0.09	! : 0.09	b : 0.07	c : 0.06	: : 0.04	a : 0.03	= : 0.03	# : 0.01	h : 0.01	$ : 0.01	
f : 0.27	g : 0.12	e : 0.12	i : 0.09	" : 0.09	[ : 0.06	b : 0.06	! : 0.04	c : 0.03	d : 0.03	= : 0.03	a : 0.01	: : 0.01	h : 0.01	
f : 0.27	e : 0.21	g : 0.12	i : 0.07	" : 0.07	[ : 0.07	d : 0.06	! : 0.04	= : 0.03	c : 0.01	h : 0.01	
f : 0.24	e : 0.22	d : 0.16	g : 0.12	i : 0.07	" : 0.03	b : 0.03	= : 0.03	[ : 0.03	c : 0.01	a : 0.01	! : 0.01	
f : 0.24	e : 0.21	d : 0.16	g : 0.12	c : 0.09	i : 0.07	b : 0.03	= : 0.03	" : 0.01	w : 0.01	
f : 0.19	e : 0.18	d : 0.13	g : 0.12	c : 0.07	w : 0.07	i : 0.06	y : 0.04	b : 0.03	= : 0.03	x : 0.01	a : 0.01	[ : 0.01	
e : 0.15	f : 0.15	w : 0.10	v : 0.10	d : 0.10	c : 0.07	i : 0.06	x : 0.06	y : 0.06	g : 0.04	b : 0.03	= : 0.03	a : 0.01	
u : 0.28	v : 0.25	w : 0.15	t : 0.07	x : 0.06	y : 0.06	g : 0.04	i : 0.03	= : 0.01	e : 0.01	
u : 0.28	v : 0.25	t : 0.18	w : 0.15	x : 0.06	y : 0.06	
u : 0.28	v : 0.25	t : 0.18	w : 0.15	x : 0.06	y : 0.06	
u : 0.28	v : 0.25	t : 0.18	w : 0.15	x : 0.06	y : 0.06	
u : 0.28	v : 0.25	t : 0.18	w : 0.15	x : 0.06	y : 0.06	
u : 0.28	v : 0.25	t : 0.18	w : 0.15	x : 0.06	y : 0.06	
u : 0.28	v : 0.25	t : 0.18	w : 0.15	x : 0.06	y : 0.06	
u : 0.28	v : 0.25	t : 0.18	w : 0.15	x : 0.06	y : 0.06	
u : 0.28	v : 0.25	t : 0.18	w : 0.15	x : 0.06	y : 0.06	
u : 0.28	v : 0.25	t : 0.18	w : 0.15	x : 0.06	y : 0.06	
u : 0.28	v : 0.25	t : 0.18	w : 0.15	x : 0.06	y : 0.06	
u : 0.28	v : 0.25	w : 0.13	t : 0.10	x : 0.06	y : 0.06	c : 0.04	d : 0.03	a : 0.01	
e : 0.16	v : 0.15	f : 0.09	d : 0.09	w : 0.07	b : 0.07	g : 0.07	i : 0.06	c : 0.06	x : 0.06	y : 0.06	= : 0.01	a : 0.01	
e : 0.21	f : 0.16	d : 0.10	g : 0.09	c : 0.07	b : 0.07	i : 0.06	y : 0.06	x : 0.04	w : 0.04	= : 0.03	a : 0.01	] : 0.01	
f : 0.22	e : 0.21	d : 0.13	g : 0.12	i : 0.07	] : 0.07	c : 0.04	= : 0.03	3 : 0.03	4 : 0.01	2 : 0.01	y : 0.01	
f : 0.25	e : 0.24	d : 0.13	g : 0.12	i : 0.07	] : 0.03	c : 0.03	= : 0.03	3 : 0.03	4 : 0.01	2 : 0.01	h : 0.01	
f : 0.27	e : 0.25	g : 0.12	i : 0.07	d : 0.07	3 : 0.04	c : 0.03	] : 0.03	= : 0.03	4 : 0.01	a : 0.01	b : 0.01	h : 0.01	
f : 0.30	g : 0.12	e : 0.12	i : 0.07	2 : 0.06	d : 0.06	c : 0.04	= : 0.04	4 : 0.03	3 : 0.03	b : 0.03	] : 0.03	5 : 0.01	: : 0.01	h : 0.01	
f : 0.21	g : 0.12	i : 0.10	2 : 0.10	e : 0.09	: : 0.06	c : 0.06	3 : 0.04	= : 0.04	4 : 0.04	d : 0.03	b : 0.03	5 : 0.01	] : 0.01	h : 0.01	

#score	1504.7879695258923
#seq	66
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_transcript_m1_run2.txt

#BEAR
ddd[dddd[dddd[ddddoooooodddd]dddd]dddd]d	chr17:80808011-80808252(+)$1	241	105	145	13.3430
####iiiiiiiii[cccooooooccc22iiiiiiiii333	chr12:66359808-66360071(+)$1	263	211	251	18.9565
:===========[cccbbnnnnnbb]ccc]==========	chr2:130919691-130919978(-)$1	287	246	286	13.9493
ccc[a==========[bboooooobb]==========]a]	chr1:21983427-21983724(-)$1	297	196	236	18.2385
""cccbb[bb[dddd[ddddoooooodddd333dddd333	chr3:48664457-48664779(-)$1	322	83	123	12.6377
iiiiiii"""ccc"""bboooooobb333ccc55555iii	chr1:155107103-155107375(+)$1	272	217	257	13.3352
FFF:iiiiiiiii[bb[aooooooa]bb]iiiiiiiiidd	chr2:240287258-240287517(-)$1	259	129	169	13.9057
d"""iiiiiiiiiccccccmmmmccc22ccc]iiiiiiii	chr11:2155940-2156199(-)$1	259	97	137	15.5922
============####ccclllccc333============	chr14:101201256-101201478(+)$1	222	52	92	17.2142
f"""ffffffdddd[cccooooooccc22dddd333ffff	chr9:33112347-33112629(-)$1	282	195	235	15.3495
####iiiiiiiii!!cccooooooccc]iiiiiiiii333	chr2:171574185-171574421(+)$1	236	70	110	20.7426
"""==========[eeeeemmmmeeeee==========66	chr14:70497258-70497518(+)$1	260	39	79	14.6483
d"""dddd"""a!!eeeeellleeeee22a333dddd333	chr16:87739415-87739705(-)$1	290	212	252	13.0548
!!iiiiiiiiicccssssssssssccc]iiiiiiiii22c	chr12:8071859-8072110(-)$1	251	139	179	13.0804
ggggggggg[eeeeecccooooooccc]eeeeeggggggg	chr4:1809185-1809431(+)$1	246	133	173	16.5077
ccccbbccc[ccc[ddddooooooddddccc22ccc]bb]	chr17:39847020-39847272(+)$1	252	92	132	14.4421
HHgggggggbbbb[ddddoooooodddd]bb]bb]ggggg	chr17:70117262-70117492(+)$1	230	188	228	13.8178
%bbggggggg$$$$$cccooooooccc4444ggggggg]b	chr22:29194967-29195183(-)$1	216	129	169	16.7134
ddd[dddd[dddd[ddddoooooodddd]dddd]dddd]d	chr17:80808052-80808321(+)$1	269	64	104	13.3430
ccc[==========!!bbmmmmbb22==========]ccc	chr2:102508245-102508511(+)$1	266	102	142	14.1140
cc[iiiiiiiii"""cccnnnnnccc333iiiiiiiii]c	chr7:127231551-127231826(+)$1	275	20	60	16.7680
c[dddd[a[ffffffcccooooooccc]ffffff333a]d	chr2:171573458-171573682(+)$1	224	163	203	15.1087
$$$$ccc!!dddd[eeeeeooooooeeeee22dddd22cc	chr1:169101377-169101671(+)$1	294	166	206	12.8838
[ggggggg[==========mmmm==========22ggggg	chr11:62392232-62392474(-)$1	242	70	110	15.2914
==========!!eeeeecccmmmmccc]eeeee22=====	chr2:20648242-20648505(+)$1	263	46	86	14.0026
:ccc[eeeee[a!!ddddoooooodddd333a]eeeee]c	chr16:50615604-50615912(+)$1	308	72	112	14.6182
eiiiiiiiii[bb[ddddoooooodddd]bb333iiiiii	chr11:64894800-64895099(-)$1	299	148	188	17.2999
fff[==============mmmm==============]fff	chr17:79963812-79964116(+)$1	304	160	200	15.1091
[eeeeeccc!!ccc[bbbboooooobb]bb]cccccc]ee	chr13:113977557-113977809(+)$1	252	32	72	12.8047
cc!!a"""==========oooooo==========22a22c	chr22:38203104-38203326(+)$1	222	94	134	17.9657
ddd[ccc[bb[ccc[cccooooooccc]ccc]bb]cccdd	chr17:70117191-70117462(+)$1	271	187	227	15.8410
bb[ggggggg[bb[cccammmma]ccc]bbggggggg]bb	chr18:55989913-55990152(+)$1	239	183	223	13.5082
####bb!!ccc[ccc[bboooooobb]ccc]ccc22bbff	chr13:113761150-113761402(+)$1	252	195	235	14.3385
hhhhggggggg####cccooooooccc22ggggggg::::	chr5:139646359-139646571(-)$1	212	147	187	13.2428
####ccc[eeeee!!ccc[aooooooa]ccc22eeeee]c	chr2:220047689-220047938(+)$1	249	148	188	14.9183
Eiiiiiiiiiccc[cccmmmmcccccc4444iiiiiiiii	chr2:240287631-240287883(-)$1	252	162	202	13.3323
e!!bb!!ggggggg!!bboooooobb4444ggggggg]bb	chr4:166419235-166419535(+)$1	300	251	291	16.1675
=========dddd!!cccooooooccc4444dddd]====	chr5:177022684-177022945(+)$1	261	46	86	18.1991
=====!!ggggggg[ddddmmmmdddd]ggggggg=====	chr1:227163994-227164303(+)$1	309	117	157	14.2454
iiiiiiii!!ccc[ccccccmmmmccc]ccc333ccc22i	chr3:186796027-186796277(+)$1	250	125	165	15.0179
####cccffffff"""cccnnnnnccc22ffffff]ccc5	chr15:23051229-23051522(-)$1	293	81	121	12.3557
$$$dddd[bbdddd[cccoooooocccdddd]bbddddcc	chr7:75615844-75616116(+)$1	272	205	245	13.6103
ddddggggggga"""cccooooooccc333a]gggggggE	chr7:148700306-148700604(-)$1	298	246	286	17.0112
[bb[ffffff[bb[ddddoooooodddd]bb]ffffff]b	chr7:1056006-1056286(-)$1	280	130	170	14.0717
!!ccc!!a[iiiiiiiiillliiiiiiiii]a22ccc444	chr12:112460380-112460660(+)$1	280	136	176	13.6781
:::bb[ccc[eeeeecccooooooccc333eeeee]cccb	chr19:18704013-18704269(-)$1	256	93	133	12.9158
Gggggggg####ffffffooooooffffff4444gggggg	chr1:92146175-92146469(-)$1	294	226	266	14.5998
gg[eeeeebb####ddddooooooddddbb]eeeee]ggg	chr2:36776059-36776311(+)$1	252	11	51	14.1887
!!ffffff[a[eeeee[aooooooaeeeee]affffff22	chr3:32932966-32933189(+)$1	223	107	147	13.7129
"""ggggggg!!eeeeecccmmmmccc]eeeee22ggggg	chr1:44048901-44049186(+)$1	285	13	53	13.3639
"""===============mmmm===============]ii	chr17:79964001-79964332(+)$1	331	220	260	17.0585
gg::cccffffff!!cccooooooccc]ffffff]ccc::	chr2:219128810-219129111(-)$1	301	96	136	12.2909
ffff[dddd####ccc!!aooooooa22ccc22dddd22f	chr18:76906317-76906567(+)$1	250	91	131	13.2117
ccc[dddd[ccc####cccmmmmccc333ccc]dddd]cc	chr18:74135466-74135711(-)$1	245	36	76	13.5191
cc!!ccc[bb"""eeeeeooooooeeeee]bbccc22ccc	chr16:87865237-87865466(-)$1	229	1	41	14.0642
======!!a!!bb[cccbblllbb]cccbb22a]======	chr20:43955681-43955941(-)$1	260	204	244	13.5279

#otherMatches

#Seq PSSM
ggcugugcuguuguuggcuguguuguuguuggcugugcug	chr17:80808011-80808252(+)$1	241	105	145	13.3430
UGCUCUUUGUUACAGUUCCAUUAAAUGAGUAAUAAAGUUU	chr12:66359808-66360071(+)$1	263	211	251	18.9565
GCUCCCGCCCUUGGGAACCCACUGUAUCUGGAGGGUGGGA	chr2:130919691-130919978(-)$1	287	246	286	13.9493
cugucuuguucagacucuaucgccagugucugaauagugu	chr1:21983427-21983724(-)$1	297	196	236	18.2385
AUAUGCACAUCUGGGUGUGCCCUCCUGCAUGUCCCCACAC	chr3:48664457-48664779(-)$1	322	83	123	12.6377
GUGUUUUUUCGGACAUGCUUUUCUGCCACUCCAUAUUAAA	chr1:155107103-155107375(+)$1	272	217	257	13.3352
GCCACACGCAUGACCCUGACAACCCUGGCUUGUGUGUGCA	chr2:240287258-240287517(-)$1	259	129	169	13.9057
GCAUGCGCCUCCUUGGGCCCCAAGGCUGCCGUGGGGGGUG	chr11:2155940-2156199(-)$1	259	97	137	15.5922
UGGUGUUCGCUAUCUCUUGUGUCAAAUCUGGUGAACGCUA	chr14:101201256-101201478(+)$1	222	52	92	17.2142
AAGGCCUCCCGGUCAGCAUUAUCCUGCCAGACCUCGGGGA	chr9:33112347-33112629(-)$1	282	195	235	15.3495
AAAGGAACUUGGGAGAUUUGAAACAGUGCUCGGGUUUUCG	chr2:171574185-171574421(+)$1	236	70	110	20.7426
AGAGAUUUAUAUGCUGUAUAUAAAUAUAUAUGUAAAUUGU	chr14:70497258-70497518(+)$1	260	39	79	14.6483
CUUUCCUCACACUCUCAGCUAAGCUGGUUGGAAGAGGCUC	chr16:87739415-87739705(-)$1	290	212	252	13.0548
CAUGUCAACUUCUGGCUCCUCAAACAGUAGGUUGGCAGUA	chr12:8071859-8072110(-)$1	251	139	179	13.0804
GGGGCAGGGAGCUGGGCCCGACAUGGCUCCGGCCUCUGCC	chr4:1809185-1809431(+)$1	246	133	173	16.5077
UCCUUGCAAUGAGUAGAAUUUCCCUUCUCUCCCUUGUCAC	chr17:39847020-39847272(+)$1	252	92	132	14.4421
AGAGGAGCCCGCGCCUCGAGUCCCCGAGCCGCCGCGGCUU	chr17:70117262-70117492(+)$1	230	188	228	13.8178
AGAAGAAGAGGUAAAACUACUUAAGGUCAAACUCUUUUAU	chr22:29194967-29195183(-)$1	216	129	169	16.7134
ggcugugcuguuguuggcuguguuguuguuggcugugcug	chr17:80808052-80808321(+)$1	269	64	104	13.3430
GGGGUCCCAUUUUGUUUCUUUGGAUUUGGGGUGGGGGUCC	chr2:102508245-102508511(+)$1	266	102	142	14.1140
CUAUGGAAGGGGCUUCCUGGCCAAGGCCCCCUCUUCCAGA	chr7:127231551-127231826(+)$1	275	20	60	16.7680
GCUGCGGCAAGGUGUACGGGAAGACGUCGCACCUGAAGGC	chr2:171573458-171573682(+)$1	224	163	203	15.1087
UCUGGAUCUGCCCAUCACUUUGGCUAGUGACAGGGCUAAU	chr1:169101377-169101671(+)$1	294	166	206	12.8838
UGGGGAGUCGGGGAAUAUUUGUGGGUAUUUUUUUUACUUC	chr11:62392232-62392474(-)$1	242	70	110	15.2914
GAGGAUGGGGGGAUGuuauauaaauauagauauaauuuua	chr2:20648242-20648505(+)$1	263	46	86	14.0026
GCAGCUCUCAGUGGCUGUUAGCUUACAGAGGAGUGGGACC	chr16:50615604-50615912(+)$1	308	72	112	14.6182
UGGUCUUUCCAGUUUAGAAAAGGCUCUGUGCCAAGGAGGG	chr11:64894800-64895099(-)$1	299	148	188	17.2999
gggggcguguguguguccuugcggguacacaugcgugcuu	chr17:79963812-79964116(+)$1	304	160	200	15.1091
CUGUUGACAUUCGGGGUGAUCCUGUUCUGCGCUGUGUACA	chr13:113977557-113977809(+)$1	252	32	72	12.8047
CUGUGUGCAUGUGUGUGUUUGUGUAUAUAUACAUAUCUAG	chr22:38203104-38203326(+)$1	222	94	134	17.9657
CUCGCCGCGGUAGCCGGCCGACGCGCCAGCUUCCCCGGGA	chr17:70117191-70117462(+)$1	271	187	227	15.8410
AUGCCUGCCCUGCGUGCCGUGGGUGUGGGUGGGUGGGGAU	chr18:55989913-55990152(+)$1	239	183	223	13.5082
UGUUCCCUGCUCGAGAGGAAGUGACCGCUCCAGCUUGGCC	chr13:113761150-113761402(+)$1	252	195	235	14.3385
GAGACAGCAGUCUAGUACUUGCUUGUAAAGCUGUUGAUGA	chr5:139646359-139646571(-)$1	212	147	187	13.2428
CAUCCUUUGCCAGCUCCUCCUAUCCCGUGGGCACUGGCCA	chr2:220047689-220047938(+)$1	249	148	188	14.9183
GCAUGCGUGUUUGUGUGUGUCCACCAGUGCCACAUGCAUG	chr2:240287631-240287883(-)$1	252	162	202	13.3323
AGUUCUCUAAGAUUUUUGGUCUGGCAUUGUGGUCUUAUGA	chr4:166419235-166419535(+)$1	300	251	291	16.1675
GGGGGGAGGGGAAUGGGCAGGCAAGCCAGUCUUCUGUCUU	chr5:177022684-177022945(+)$1	261	46	86	18.1991
GUUGCCUggcuucggggcugcggggcugcggggcugcgAU	chr1:227163994-227164303(+)$1	309	117	157	14.2454
GGUUCUGUCUUCUUUGAUAGCCAUCUAUUCAUCUGGAUCA	chr3:186796027-186796277(+)$1	250	125	165	15.0179
ACCCUGGUUUGCAUGUCCACACCCUGGUUUGCAAGUCCAC	chr15:23051229-23051522(-)$1	293	81	121	12.3557
GGUGGCUGCACAGAAGGGCUCUUUCUCUCUGCUGAGCUGG	chr7:75615844-75616116(+)$1	272	205	245	13.6103
AGGGCUGGGGGCAAAGGGGCAUGAUCCAGGGUCCCCCAGG	chr7:148700306-148700604(-)$1	298	246	286	17.0112
ugcugugcgcugcugugcugcugugcgcugcugugugcug	chr7:1056006-1056286(-)$1	280	130	170	14.0717
GGCUGUGAGUCCCUUGUGGAAUAUAAGGGGGUAGUGGGAA	chr12:112460380-112460660(+)$1	280	136	176	13.6781
GUGUGUGUGAGGGUUGGUUGAGUUGCCUAGAACCCCUGCC	chr19:18704013-18704269(-)$1	256	93	133	12.9158
UGGGUGAGUCCUAUGUGAUUUUUUUCAUGUUUGUUUUAUC	chr1:92146175-92146469(-)$1	294	226	266	14.5998
UAAAGUUGCUAAGAUAUAUUUGCCUGUAAGAUAGCUGUAG	chr2:36776059-36776311(+)$1	252	11	51	14.1887
AGUUCCUGCGCCCACAAGGGGUAGCUGUGGACCAGGAAGG	chr3:32932966-32933189(+)$1	223	107	147	13.7129
GACCAGGGAUGGGUGGGCAGACCCCUGACCUGCAUGUUCC	chr1:44048901-44049186(+)$1	285	13	53	13.3639
gguguguguguauaugcaugucugugugugcacauaugug	chr17:79964001-79964332(+)$1	331	220	260	17.0585
CUUUCACUUUCAUUUGCUGGUGUGAGCCAUGGGGUGUGUA	chr2:219128810-219129111(-)$1	301	96	136	12.2909
GCAUGUCGGGGGAGCUGGCGGUGUGGAGAGUGACCGAAGG	chr18:76906317-76906567(+)$1	250	91	131	13.2117
CACCUGCGUGUGUUUCGGGGGAGCCUUUUCACCUGCGUGU	chr18:74135466-74135711(-)$1	245	36	76	13.5191
CGUUUGGAGGCCCCUGGGCUCUCACCCAGUCCCCACCCGC	chr16:87865237-87865466(-)$1	229	1	41	14.0642
GCCAGGUUCUUCUUGAGCUUUGGGCCUCAGUUGCCCUGGC	chr20:43955681-43955941(-)$1	260	204	244	13.5279

#DB
(((.((((.((((.((((......)))).)))).)))).)	chr17:80808011-80808252(+)$1	1	105	145	13.3430
....(((((((((.(((......)))..)))))))))...	chr12:66359808-66360071(+)$1	1	211	251	18.9565
.(((((((((((.(((((.....)).))).))))))))))	chr2:130919691-130919978(-)$1	1	246	286	13.9493
(((.(((((((((((.((......)).)))))))))).).	chr1:21983427-21983724(-)$1	1	196	236	18.2385
..(((((.((.((((.((((......))))...))))...	chr3:48664457-48664779(-)$1	1	83	123	12.6377
(((((((...(((...((......))...))).....)))	chr1:155107103-155107375(+)$1	1	217	257	13.3352
(((.(((((((((.((.(......).)).)))))))))((	chr2:240287258-240287517(-)$1	1	129	169	13.9057
(...(((((((((((((((....)))..))).))))))))	chr11:2155940-2156199(-)$1	1	97	137	15.5922
((((((((((((....(((...)))...))))))))))))	chr14:101201256-101201478(+)$1	1	52	92	17.2142
(...((((((((((.(((......)))..))))...))))	chr9:33112347-33112629(-)$1	1	195	235	15.3495
....(((((((((..(((......))).)))))))))...	chr2:171574185-171574421(+)$1	1	70	110	20.7426
...((((((((((.(((((....)))))))))))))))..	chr14:70497258-70497518(+)$1	1	39	79	14.6483
(...((((...(..(((((...)))))..)...))))...	chr16:87739415-87739705(-)$1	1	212	252	13.0548
..((((((((((((..........))).)))))))))..)	chr12:8071859-8072110(-)$1	1	139	179	13.0804
(((((((((.((((((((......))).))))))))))))	chr4:1809185-1809431(+)$1	1	133	173	16.5077
(((((((((.(((.((((......)))))))..))).)).	chr17:39847020-39847272(+)$1	1	92	132	14.4421
))(((((((((((.((((......)))).)).)).)))))	chr17:70117262-70117492(+)$1	1	188	228	13.8178
.(((((((((.....(((......)))....))))))).)	chr22:29194967-29195183(-)$1	1	129	169	16.7134
(((.((((.((((.((((......)))).)))).)))).)	chr17:80808052-80808321(+)$1	1	64	104	13.3430
(((.((((((((((..((....))..)))))))))).)))	chr2:102508245-102508511(+)$1	1	102	142	14.1140
((.(((((((((...(((.....)))...))))))))).)	chr7:127231551-127231826(+)$1	1	20	60	16.7680
(.((((.(.(((((((((......))).))))))...).)	chr2:171573458-171573682(+)$1	1	163	203	15.1087
....(((..((((.(((((......)))))..))))..))	chr1:169101377-169101671(+)$1	1	166	206	12.8838
.(((((((.((((((((((....))))))))))..)))))	chr11:62392232-62392474(-)$1	1	70	110	15.2914
((((((((((..((((((((....))).)))))..)))))	chr2:20648242-20648505(+)$1	1	46	86	14.0026
.(((.(((((.(..((((......))))...).))))).)	chr16:50615604-50615912(+)$1	1	72	112	14.6182
((((((((((.((.((((......)))).))...))))))	chr11:64894800-64895099(-)$1	1	148	188	17.2999
(((.((((((((((((((....)))))))))))))).)))	chr17:79963812-79964116(+)$1	1	160	200	15.1091
.((((((((..(((.((((......)).)).)))))).))	chr13:113977557-113977809(+)$1	1	32	72	12.8047
((..(...((((((((((......))))))))))..)..)	chr22:38203104-38203326(+)$1	1	94	134	17.9657
(((.(((.((.(((.(((......))).))).)).)))))	chr17:70117191-70117462(+)$1	1	187	227	15.8410
((.(((((((.((.((((....).))).))))))))).))	chr18:55989913-55990152(+)$1	1	183	223	13.5082
....((..(((.(((.((......)).))).)))..))))	chr13:113761150-113761402(+)$1	1	195	235	14.3385
))))(((((((....(((......)))..)))))))....	chr5:139646359-139646571(-)$1	1	147	187	13.2428
....(((.(((((..(((.(......).)))..))))).)	chr2:220047689-220047938(+)$1	1	148	188	14.9183
)((((((((((((.(((....))))))....)))))))))	chr2:240287631-240287883(-)$1	1	162	202	13.3323
(..((..(((((((..((......))....))))))).))	chr4:166419235-166419535(+)$1	1	251	291	16.1675
(((((((((((((..(((......)))....)))).))))	chr5:177022684-177022945(+)$1	1	46	86	18.1991
(((((..(((((((.((((....)))).))))))))))))	chr1:227163994-227164303(+)$1	1	117	157	14.2454
((((((((..(((.((((((....))).)))...)))..)	chr3:186796027-186796277(+)$1	1	125	165	15.0179
....(((((((((...(((.....)))..)))))).))).	chr15:23051229-23051522(-)$1	1	81	121	12.3557
...((((.((((((.(((......))))))).))))))))	chr7:75615844-75616116(+)$1	1	205	245	13.6103
))))((((((((...(((......)))...).))))))))	chr7:148700306-148700604(-)$1	1	246	286	17.0112
.((.((((((.((.((((......)))).)).)))))).)	chr7:1056006-1056286(-)$1	1	130	170	14.0717
..(((..(.(((((((((...))))))))).)..)))...	chr12:112460380-112460660(+)$1	1	136	176	13.6781
...((.(((.((((((((......)))...))))).))))	chr19:18704013-18704269(-)$1	1	93	133	12.9158
)(((((((....((((((......))))))....))))))	chr1:92146175-92146469(-)$1	1	226	266	14.5998
((.(((((((....((((......)))))).))))).)))	chr2:36776059-36776311(+)$1	1	11	51	14.1887
..((((((.(.(((((.(......)))))).)))))))..	chr3:32932966-32933189(+)$1	1	107	147	13.7129
...(((((((..((((((((....))).)))))..)))))	chr1:44048901-44049186(+)$1	1	13	53	13.3639
...(((((((((((((((....))))))))))))))).))	chr17:79964001-79964332(+)$1	1	220	260	17.0585
))..(((((((((..(((......))).)))))).)))..	chr2:219128810-219129111(-)$1	1	96	136	12.2909
((((.((((....(((..(......)..)))..))))..)	chr18:76906317-76906567(+)$1	1	91	131	13.2117
(((.((((.(((....(((....)))...))).)))).))	chr18:74135466-74135711(-)$1	1	36	76	13.5191
((..(((.((...(((((......))))).)))))..)))	chr16:87865237-87865466(-)$1	1	1	41	14.0642
((((((..(..((.(((((...)).)))))..).))))))	chr20:43955681-43955941(-)$1	1	204	244	13.5279

#PSSM
c : 0.14	d : 0.10	# : 0.08	= : 0.08	" : 0.07	: : 0.05	f : 0.05	! : 0.05	g : 0.05	[ : 0.05	i : 0.03	$ : 0.03	e : 0.03	F : 0.01	H : 0.01	% : 0.01	b : 0.01	h : 0.01	E : 0.01	G : 0.01	
c : 0.14	" : 0.12	= : 0.10	# : 0.08	g : 0.08	d : 0.07	i : 0.07	! : 0.07	b : 0.05	$ : 0.03	f : 0.03	F : 0.01	H : 0.01	[ : 0.01	e : 0.01	h : 0.01	: : 0.01	
c : 0.12	= : 0.10	" : 0.10	d : 0.08	# : 0.08	i : 0.08	g : 0.07	[ : 0.05	f : 0.05	! : 0.05	b : 0.03	$ : 0.03	: : 0.03	F : 0.01	e : 0.01	h : 0.01	
[ : 0.14	= : 0.14	g : 0.12	i : 0.10	# : 0.08	c : 0.07	" : 0.05	d : 0.05	: : 0.03	e : 0.03	! : 0.03	b : 0.03	f : 0.03	$ : 0.01	h : 0.01	
i : 0.17	= : 0.17	g : 0.16	c : 0.14	d : 0.10	b : 0.07	f : 0.05	a : 0.03	[ : 0.03	e : 0.03	
i : 0.17	= : 0.17	g : 0.16	d : 0.12	c : 0.10	b : 0.05	f : 0.05	e : 0.05	! : 0.05	" : 0.01	[ : 0.01	
i : 0.17	= : 0.16	g : 0.16	c : 0.16	d : 0.10	! : 0.08	f : 0.05	e : 0.03	b : 0.01	[ : 0.01	" : 0.01	
g : 0.19	i : 0.16	= : 0.16	d : 0.08	[ : 0.08	f : 0.08	c : 0.05	! : 0.05	" : 0.03	a : 0.03	e : 0.03	
= : 0.17	g : 0.16	i : 0.14	[ : 0.12	b : 0.08	f : 0.07	c : 0.07	" : 0.03	! : 0.03	e : 0.03	# : 0.01	d : 0.01	a : 0.01	
= : 0.17	i : 0.16	g : 0.12	b : 0.10	f : 0.08	d : 0.07	[ : 0.05	! : 0.05	" : 0.03	e : 0.03	c : 0.03	# : 0.03	a : 0.01	
= : 0.16	i : 0.12	[ : 0.12	d : 0.10	c : 0.10	! : 0.07	g : 0.07	e : 0.05	f : 0.05	# : 0.05	" : 0.03	b : 0.01	$ : 0.01	
= : 0.16	c : 0.14	d : 0.12	i : 0.10	b : 0.08	e : 0.07	# : 0.07	a : 0.05	f : 0.05	! : 0.03	g : 0.03	$ : 0.01	[ : 0.01	" : 0.01	
c : 0.14	d : 0.12	= : 0.12	e : 0.10	i : 0.08	# : 0.08	b : 0.08	f : 0.07	" : 0.05	! : 0.03	g : 0.03	[ : 0.01	$ : 0.01	
[ : 0.24	c : 0.12	= : 0.10	! : 0.10	e : 0.10	" : 0.07	# : 0.07	d : 0.05	f : 0.03	g : 0.03	$ : 0.01	i : 0.01	
d : 0.16	c : 0.16	e : 0.16	! : 0.10	= : 0.08	[ : 0.08	" : 0.07	# : 0.05	f : 0.03	b : 0.01	s : 0.01	$ : 0.01	i : 0.01	
c : 0.39	d : 0.16	e : 0.12	= : 0.07	[ : 0.05	" : 0.03	b : 0.03	# : 0.03	! : 0.03	s : 0.01	i : 0.01	f : 0.01	
c : 0.41	d : 0.17	b : 0.12	e : 0.10	= : 0.07	[ : 0.03	s : 0.01	i : 0.01	f : 0.01	! : 0.01	
c : 0.37	d : 0.17	b : 0.14	e : 0.07	= : 0.07	a : 0.05	o : 0.01	s : 0.01	m : 0.01	i : 0.01	f : 0.01	! : 0.01	
o : 0.53	c : 0.12	m : 0.08	e : 0.05	n : 0.03	d : 0.03	b : 0.03	s : 0.01	= : 0.01	[ : 0.01	l : 0.01	a : 0.01	
o : 0.58	m : 0.17	l : 0.07	n : 0.05	c : 0.05	d : 0.01	s : 0.01	a : 0.01	
o : 0.62	m : 0.23	l : 0.07	n : 0.05	s : 0.01	
o : 0.62	m : 0.21	n : 0.05	l : 0.05	s : 0.01	c : 0.01	i : 0.01	
o : 0.62	m : 0.14	n : 0.05	c : 0.03	b : 0.03	= : 0.03	e : 0.01	s : 0.01	a : 0.01	i : 0.01	
o : 0.60	c : 0.10	b : 0.05	= : 0.05	m : 0.05	e : 0.03	s : 0.01	] : 0.01	d : 0.01	n : 0.01	i : 0.01	
c : 0.42	d : 0.16	b : 0.08	o : 0.08	= : 0.07	e : 0.05	a : 0.03	2 : 0.01	i : 0.01	f : 0.01	] : 0.01	
c : 0.42	d : 0.16	b : 0.08	e : 0.08	= : 0.07	] : 0.03	o : 0.03	3 : 0.01	2 : 0.01	i : 0.01	f : 0.01	a : 0.01	
c : 0.37	d : 0.17	e : 0.08	= : 0.08	3 : 0.07	2 : 0.05	] : 0.03	b : 0.03	a : 0.01	4 : 0.01	i : 0.01	f : 0.01	
] : 0.23	d : 0.17	2 : 0.12	= : 0.10	3 : 0.10	e : 0.07	4 : 0.07	c : 0.05	b : 0.01	i : 0.01	f : 0.01	
c : 0.14	= : 0.14	] : 0.10	3 : 0.10	e : 0.10	i : 0.07	2 : 0.07	4 : 0.07	b : 0.07	f : 0.05	d : 0.03	g : 0.01	
c : 0.16	= : 0.14	b : 0.12	i : 0.10	d : 0.08	e : 0.08	4 : 0.07	f : 0.07	3 : 0.05	] : 0.03	g : 0.03	a : 0.01	
= : 0.16	c : 0.14	i : 0.08	] : 0.08	d : 0.07	e : 0.07	b : 0.07	4 : 0.07	g : 0.07	3 : 0.05	f : 0.05	2 : 0.03	a : 0.01	
= : 0.16	i : 0.10	] : 0.10	e : 0.08	2 : 0.08	g : 0.08	d : 0.07	3 : 0.07	c : 0.07	f : 0.05	a : 0.05	4 : 0.01	b : 0.01	
= : 0.16	i : 0.12	g : 0.10	d : 0.08	e : 0.08	f : 0.08	3 : 0.07	2 : 0.07	b : 0.05	c : 0.05	] : 0.03	5 : 0.01	4 : 0.01	a : 0.01	
= : 0.14	i : 0.12	g : 0.12	d : 0.10	f : 0.08	c : 0.07	2 : 0.07	e : 0.07	] : 0.05	3 : 0.05	b : 0.05	5 : 0.01	4 : 0.01	
d : 0.16	i : 0.14	= : 0.14	g : 0.14	c : 0.08	2 : 0.08	e : 0.07	] : 0.05	f : 0.05	3 : 0.03	5 : 0.01	
= : 0.17	g : 0.17	d : 0.14	i : 0.14	c : 0.10	e : 0.05	2 : 0.05	] : 0.05	3 : 0.03	f : 0.03	5 : 0.01	
= : 0.16	g : 0.16	i : 0.14	d : 0.12	c : 0.12	] : 0.07	f : 0.05	2 : 0.03	e : 0.03	5 : 0.01	3 : 0.01	a : 0.01	b : 0.01	: : 0.01	
g : 0.14	= : 0.12	] : 0.10	i : 0.10	c : 0.10	2 : 0.08	3 : 0.07	f : 0.07	d : 0.05	b : 0.03	e : 0.03	a : 0.01	: : 0.01	4 : 0.01	
] : 0.14	g : 0.12	c : 0.12	= : 0.10	i : 0.08	2 : 0.08	3 : 0.07	f : 0.05	b : 0.05	d : 0.03	: : 0.03	a : 0.01	6 : 0.01	e : 0.01	4 : 0.01	
c : 0.17	= : 0.10	i : 0.10	g : 0.10	d : 0.08	b : 0.08	3 : 0.07	f : 0.07	] : 0.03	: : 0.03	6 : 0.01	e : 0.01	5 : 0.01	E : 0.01	4 : 0.01	2 : 0.01	

#score	826.832578856582
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_transcript_m1_run1.txt

#BEAR
h!!ffffff[eeeeellleeeee]ffffff]hhhhhhhh]	chr17:19093343-19093553(-)$1	210	13	53	23.9943
gggggg!!a[ddddmmmmdddd]a4444ggggggg]dddd	chr2:133015122-133015353(-)$1	231	44	84	15.2118
h!!ffffff[eeeeellleeeee]ffffff]hhhhhhhh]	chr17:19093390-19093627(-)$1	237	87	127	23.9943
h!!ffffff[eeeeellleeeee]ffffff]hhhhhhhh]	chr17:19091288-19091507(+)$1	219	58	98	23.9943
h!!ffffff[eeeeellleeeee]ffffff]hhhhhhhh]	chr17:19091320-19091544(+)$1	224	26	66	23.9943
h!!ffffff[eeeeellleeeee]ffffff]hhhhhhhh]	chr17:19093354-19093577(-)$1	223	37	77	23.9943
gggggg!!a[ddddmmmmdddd]a4444ggggggg]dddd	chr2:133015153-133015365(-)$1	212	56	96	15.2118
cc!!ccc[ccc[bboooooobb]ccc]ccc22ccc]hhhh	chr16:2015088-2015366(+)$1	278	123	163	13.1478
h!!ffffff[eeeeellleeeee]ffffff]hhhhhhhh]	chr17:19015764-19016034(-)$1	270	103	143	23.9943
b[ccc[ccceeeeemmmmeeeee]cccccc]bb]hhhhhh	chr9:116999867-117000095(+)$1	228	21	61	17.4015
cc"""ggggggg[ammmma]gggggggccc22ccc]====	chr20:17610392-17610688(-)$1	296	248	288	13.4642
h!!ffffff[eeeeellleeeee]ffffff]hhhhhhhh]	chr17:19091307-19091512(+)$1	205	39	79	23.9943
h!!ffffff[eeeeellleeeee]ffffff]hhhhhhhh]	chr17:19091312-19091520(+)$1	208	34	74	23.9943
ddeeeee[a[ddddllldddd]a]eeeee22dddddddd!	chr9:117073833-117074102(+)$1	269	114	154	12.3259
ffffff"""eeeeellleeeee]ffffff333bb]eeeee	chr7:73007599-73007824(-)$1	225	79	119	15.0645
[ccc!!a[ddddoooooodddd]acccbbdddd22ccc]f	chr20:62575372-62575649(-)$1	277	135	175	11.4515
ggggggaddddcccmmmmccc]dddd]a]ggggggg333f	chr20:26189846-26190067(-)$1	221	34	74	11.2973
a[ggggggg[ddddllldddd22ggggggg]accc[dddd	chr8:99837539-99837771(-)$1	232	79	119	15.2727
h!!ffffff[eeeeellleeeee]ffffff]hhhhhhhh]	chr17:19093377-19093590(-)$1	213	50	90	23.9943
hh[a!!bbbbddddmmmmdddd22bb]bb22ahhhhhhhh	chr7:2394448-2394708(+)$1	260	146	186	15.1260
cc####eeeeecccmmmmccc4444eeeeeccc]dddd33	chr20:26190357-26190591(-)$1	234	41	81	11.8587

#otherMatches

#Seq PSSM
aucauuucuauaguguguuacuagagaaguuucucugaac	chr17:19093343-19093553(-)$1	210	13	53	23.9943
GUCCCUGAGCGCCUCUGCGGGCCCGACGAGGGGCGACUGG	chr2:133015122-133015353(-)$1	231	44	84	15.2118
aucauuucuauaguguguuacuagagaaguuucucugaac	chr17:19093390-19093627(-)$1	237	87	127	23.9943
aucauuucuauaguguguuacuagagaaguuucucugaac	chr17:19091288-19091507(+)$1	219	58	98	23.9943
aucauuucuauaguguguuacuagagaaguuucucugaac	chr17:19091320-19091544(+)$1	224	26	66	23.9943
aucauuucuauaguguguuacuagagaaguuucucugaac	chr17:19093354-19093577(-)$1	223	37	77	23.9943
GUCCCUGAGCGCCUCUGCGGGCCCGACGAGGGGCGACUGG	chr2:133015153-133015365(-)$1	212	56	96	15.2118
GCCGUGGCCGCGGGUGAGAUUCGGCGCCCAGAGCCCCCGG	chr16:2015088-2015366(+)$1	278	123	163	13.1478
aucauuucuauaguguguuacuagagaaguuucuuugaac	chr17:19015764-19016034(-)$1	270	103	143	23.9943
AUGGAAGGUGGGGUCCUCACCCCUGCCUCCCUGCAACCUC	chr9:116999867-117000095(+)$1	228	21	61	17.4015
GUUCAGUGCAGGGUGCUGGGUCUGCAUGCCGGCCCAGCCC	chr20:17610392-17610688(-)$1	296	248	288	13.4642
aucauuucuauaguguguuacuagagaaguuucucugaac	chr17:19091307-19091512(+)$1	205	39	79	23.9943
aucauuucuauaguguguuacuagagaaguuucucugaac	chr17:19091312-19091520(+)$1	208	34	74	23.9943
GGAGGCCUGGGUGCGAAGCAUGUUGGCUUGGCCCUUCACG	chr9:117073833-117074102(+)$1	269	114	154	12.3259
AGCAGAAAAGGAGGUUCCCUCUCUCUGCUCCUUCACUGCU	chr7:73007599-73007824(-)$1	225	79	119	15.0645
UGCUCAGGACCCAGCCGAGGGUGCAGCCCGCUCAGCACAC	chr20:62575372-62575649(-)$1	277	135	175	11.4515
CCGCGCGUGGGUCCUGAGGGAGCUCGUCGGUGUGGGGUUC	chr20:26189846-26190067(-)$1	221	34	74	11.2973
ggggcgggggUGGCUAGGCCAGGCCCUGCUGCGAGCCUCU	chr8:99837539-99837771(-)$1	232	79	119	15.2727
aucauuucuauaguguguuacuagagaaguuucucugaac	chr17:19093377-19093590(-)$1	213	50	90	23.9943
CGAGGAGCGCGCCGAGCCCGGCCAGCAGCAgccggccgcc	chr7:2394448-2394708(+)$1	260	146	186	15.1260
uugacacuuacguggcagcacucuuguaagAAUAGAauau	chr20:26190357-26190591(-)$1	234	41	81	11.8587

#DB
(..((((((.(((((...))))).)))))).)))))))).	chr17:19093343-19093553(-)$1	1	13	53	23.9943
((((((..(.((((....)))).)....))))))).))))	chr2:133015122-133015353(-)$1	1	44	84	15.2118
(..((((((.(((((...))))).)))))).)))))))).	chr17:19093390-19093627(-)$1	1	87	127	23.9943
(..((((((.(((((...))))).)))))).)))))))).	chr17:19091288-19091507(+)$1	1	58	98	23.9943
(..((((((.(((((...))))).)))))).)))))))).	chr17:19091320-19091544(+)$1	1	26	66	23.9943
(..((((((.(((((...))))).)))))).)))))))).	chr17:19093354-19093577(-)$1	1	37	77	23.9943
((((((..(.((((....)))).)....))))))).))))	chr2:133015153-133015365(-)$1	1	56	96	15.2118
((..(((.(((.((......)).))).)))..))).))))	chr16:2015088-2015366(+)$1	1	123	163	13.1478
(..((((((.(((((...))))).)))))).)))))))).	chr17:19015764-19016034(-)$1	1	103	143	23.9943
(.(((.((((((((....))))).)))))).)).))))))	chr9:116999867-117000095(+)$1	1	21	61	17.4015
((...(((((((.(....).))))))))))..))).))))	chr20:17610392-17610688(-)$1	1	248	288	13.4642
(..((((((.(((((...))))).)))))).)))))))).	chr17:19091307-19091512(+)$1	1	39	79	23.9943
(..((((((.(((((...))))).)))))).)))))))).	chr17:19091312-19091520(+)$1	1	34	74	23.9943
(((((((.(.((((...)))).).)))))..))))((((.	chr9:117073833-117074102(+)$1	1	114	154	12.3259
((((((...(((((...))))).))))))...)).)))))	chr7:73007599-73007824(-)$1	1	79	119	15.0645
.(((..(.((((......)))).))))))))))..))).)	chr20:62575372-62575649(-)$1	1	135	175	11.4515
((((((((((((((....))).)))).).)))))))...)	chr20:26189846-26190067(-)$1	1	34	74	11.2973
(.(((((((.((((...))))..))))))).)(((.((((	chr8:99837539-99837771(-)$1	1	79	119	15.2727
(..((((((.(((((...))))).)))))).)))))))).	chr17:19093377-19093590(-)$1	1	50	90	23.9943
((.(..((((((((....))))..)).))..)))))))))	chr7:2394448-2394708(+)$1	1	146	186	15.1260
((....((((((((....)))....)))))))).))))..	chr20:26190357-26190591(-)$1	1	41	81	11.8587

#PSSM
h : 0.47	g : 0.14	c : 0.14	b : 0.04	d : 0.04	f : 0.04	[ : 0.04	a : 0.04	
! : 0.42	c : 0.19	g : 0.14	[ : 0.09	d : 0.04	f : 0.04	h : 0.04	
! : 0.47	g : 0.19	c : 0.09	" : 0.04	e : 0.04	f : 0.04	[ : 0.04	# : 0.04	
f : 0.47	g : 0.19	c : 0.09	! : 0.04	" : 0.04	e : 0.04	a : 0.04	# : 0.04	
f : 0.47	g : 0.19	c : 0.09	! : 0.09	" : 0.04	e : 0.04	# : 0.04	
f : 0.47	g : 0.23	! : 0.09	c : 0.04	[ : 0.04	e : 0.04	# : 0.04	
f : 0.42	! : 0.09	c : 0.09	g : 0.09	e : 0.09	a : 0.09	" : 0.04	b : 0.04	
f : 0.42	[ : 0.14	! : 0.09	g : 0.09	c : 0.04	" : 0.04	d : 0.04	b : 0.04	e : 0.04	
f : 0.42	a : 0.14	c : 0.09	g : 0.09	d : 0.09	" : 0.04	b : 0.04	e : 0.04	
[ : 0.61	e : 0.14	d : 0.09	c : 0.04	g : 0.04	b : 0.04	
e : 0.57	d : 0.33	c : 0.04	g : 0.04	
e : 0.52	d : 0.28	c : 0.09	[ : 0.04	g : 0.04	
e : 0.52	d : 0.23	c : 0.09	b : 0.04	[ : 0.04	o : 0.04	
e : 0.52	d : 0.23	c : 0.09	b : 0.04	a : 0.04	o : 0.04	
e : 0.42	m : 0.33	l : 0.14	o : 0.09	
l : 0.57	m : 0.33	o : 0.09	
l : 0.57	m : 0.33	o : 0.09	
l : 0.42	m : 0.33	o : 0.09	d : 0.09	e : 0.04	
e : 0.52	d : 0.28	c : 0.09	o : 0.04	a : 0.04	
e : 0.52	d : 0.28	c : 0.09	o : 0.04	] : 0.04	
e : 0.52	d : 0.28	c : 0.09	b : 0.04	g : 0.04	
e : 0.52	d : 0.19	] : 0.09	b : 0.04	g : 0.04	2 : 0.04	4 : 0.04	
e : 0.47	] : 0.23	2 : 0.09	g : 0.04	a : 0.04	d : 0.04	4 : 0.04	
] : 0.52	a : 0.14	g : 0.09	c : 0.04	f : 0.04	d : 0.04	2 : 0.04	4 : 0.04	
f : 0.47	4 : 0.14	c : 0.14	g : 0.09	e : 0.04	d : 0.04	b : 0.04	
f : 0.47	c : 0.14	4 : 0.09	g : 0.09	e : 0.09	d : 0.04	b : 0.04	
f : 0.47	] : 0.14	4 : 0.09	c : 0.09	g : 0.09	e : 0.09	
f : 0.47	c : 0.14	4 : 0.09	e : 0.09	b : 0.09	a : 0.04	g : 0.04	
f : 0.47	g : 0.14	c : 0.14	e : 0.09	b : 0.09	] : 0.04	
f : 0.42	g : 0.19	c : 0.14	2 : 0.09	3 : 0.04	d : 0.04	e : 0.04	
] : 0.52	2 : 0.19	g : 0.14	3 : 0.04	d : 0.04	c : 0.04	
h : 0.42	g : 0.14	2 : 0.09	d : 0.09	a : 0.09	b : 0.04	3 : 0.04	c : 0.04	
h : 0.47	c : 0.19	g : 0.14	b : 0.09	d : 0.09	
h : 0.47	g : 0.14	c : 0.14	] : 0.09	d : 0.04	b : 0.04	2 : 0.04	
h : 0.52	g : 0.14	c : 0.14	d : 0.09	] : 0.04	2 : 0.04	
h : 0.52	] : 0.19	d : 0.09	e : 0.04	c : 0.04	g : 0.04	[ : 0.04	
h : 0.57	d : 0.23	= : 0.04	e : 0.04	c : 0.04	3 : 0.04	
h : 0.57	d : 0.23	= : 0.04	e : 0.04	c : 0.04	3 : 0.04	
h : 0.57	d : 0.19	3 : 0.09	= : 0.04	e : 0.04	] : 0.04	
] : 0.42	d : 0.14	h : 0.14	f : 0.09	= : 0.04	! : 0.04	e : 0.04	3 : 0.04	

#score	382.7833754108999
#seq	21
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_transcript_m1_run1.txt

#BEAR
ddddd:dddd[ccc[ddddnnnnndddd333ccc333ddd	chr1:2174507-2174794(+)$1	287	214	254	13.5835
===========$$$$$cccnnnnnccc333==========	chr7:150822911-150823159(+)$1	248	21	61	17.1844
fffffffffff!!a[ddddnnnnndddd333a22ffffff	chr7:101595890-101596145(+)$1	255	158	198	13.7825
[bb"""dddd[ddddddddoooooodddd]dddd22dddd	chr17:46703606-46703847(-)$1	241	10	50	12.2094
ddd!!ffffff[ddddcccnnnnnccc22dddd]ffffff	chr4:899314-899564(-)$1	250	182	222	11.9322
[ffffffggggggg[a!!annnnna]a]ggggggg4444f	chr19:3099256-3099502(+)$1	246	125	165	14.4886
e[bbddddbbbb"""ddddnnnnndddd333bb333bb]d	chr2:169313352-169313624(+)$1	272	172	212	12.7464
gggggg!!bbdddd[aooooooa]dddd]bb333gggggg	chr19:3512013-3512262(+)$1	249	46	86	12.6183
ddda[iiiiiiiii[bb[annnnna]bb]iiiiiiiii]a	chr19:42758899-42759175(-)$1	276	50	90	15.8558
!eeeee[cccccc!!ddddmmmmdddd22ccc22ccc]ee	chr8:144355576-144355832(+)$1	256	107	147	12.7440
eeeee[a[a[dddd[ddddnnnnndddd]ddddaa]eeee	chr16:75034388-75034644(+)$1	256	197	237	13.1741
cbb[ggggggg####ddddnnnnndddd333ggggggg]b	chr1:1509406-1509648(-)$1	242	84	124	16.3049
mccciiiiiiiii####bbnnnnnbb22iiiiiiiii::c	chr17:80054864-80055138(-)$1	274	37	77	12.8508
dddd[ffffffccc[ddddmmmmdddd]ccc4444fffff	chr19:45619232-45619523(+)$1	291	13	53	12.1817
=========[a####ddddnnnnndddda===========	chr8:141635771-141636041(-)$1	270	104	144	18.0727
cciiiiiiiii[aiiiiiiiiiooooooiiiiiiiii>>>	chr16:88582212-88582458(+)$1	246	48	88	12.7062
gggg"""ccc[a"""ddddrrrrrrrrrdddd333a]ccc	chr11:637704-637960(+)$1	256	3	43	12.6654
bb[ccc[ccc[ccc[bbddddllldddd]bb333ccc]cc	chr16:89012209-89012450(-)$1	241	119	159	12.6631
gggggg[a[==========oooooo==========]a333	chr16:15240954-15241212(-)$1	258	135	175	17.1109
=========[hhhhhhhhoooooohhhhhhhh========	chr16:87524293-87524567(-)$1	274	114	154	14.1639
iiiiiiiii[a[ggggggglllgggggggaiiiiiiiii]	chr10:182486-182763(+)$1	277	155	195	14.0812
ddd]a==========[cccmmmmccc22==========::	chr2:242592735-242592979(+)$1	244	127	167	13.0400
dddd[iiiiiiiii[ddddnnnnnddddiiiiiiiii]dd	chr8:145014985-145015255(-)$1	270	88	128	17.5460
::bb[gggggggccc[cccnnnnnccc]ccc]ggggggg]	chr5:170815383-170815658(+)$1	275	176	216	13.1162
dddd[==========[bbmmmmbb]==========]dddd	chr19:41107605-41107853(+)$1	248	98	138	12.6899
eee"""a!!ccc"""ddddmmmmdddd22ccc22a333ee	chr21:46494192-46494484(+)$1	292	145	185	13.8960
gggggg[a####bb[ddddmmmmddddbb22a]ggggggg	chr5:61602606-61602850(+)$1	244	97	137	12.5793
""bb[ccc!!cccffffffooooooffffff]ccc22ccc	chr9:94661056-94661298(-)$1	242	163	203	12.0107
dddd####gggggggeeeeellleeeee]ggggggg22dd	chr19:12806956-12807251(-)$1	295	156	196	12.6601
ddddccc!!ggggggg[ccclllccc]gggggggccc]dd	chr19:4984478-4984748(+)$1	270	112	152	13.1849
$$$$$eeeee[ccc[ddddoooooodddd4444ccc22ee	chr11:67044249-67044484(+)$1	235	11	51	13.6187
cceeeee!!ccc"""cccrrrrrrrrrccc333ccceeee	chr10:75758251-75758489(+)$1	238	6	46	11.8263
fffff[iiiiiiiiiddddnnnnndddd]iiiiiiiiiff	chr19:2139592-2139858(-)$1	266	182	222	16.4532
===========bb"""bboooooobb22bb]=========	chr9:139715802-139716054(+)$1	252	48	88	15.7821
:::==========!!ddddoooooodddd==========:	chr3:44903683-44903990(+)$1	307	217	257	14.8635
e[ccc[hhhhhhhh[cccooooooccchhhhhhhh333cc	chr19:18618443-18618722(-)$1	279	156	196	13.2638
c[a!!iiiiiiiii[eeeeeooooooeeeee22iiiiiii	chr1:202776578-202776875(-)$1	297	109	149	14.9634
"""a[iiiiiiiii!!bboooooobb]iiiiiiiiia]ee	chr5:34191454-34191712(-)$1	258	186	226	16.3595
dddd"""ggggggg[accclllccc]a]ggggggg]dddd	chr22:49981130-49981376(-)$1	246	39	79	13.8211
==========[bb[ggggggglllggggggg]bb]=====	chr11:64073194-64073454(+)$1	260	129	169	13.3903
"ffffff[dddd####cccnnnnnccc333dddd22ffff	chr9:131466392-131466665(+)$1	273	145	185	12.7449
ggg[ccc[ddddccc!!ddddllldddd]ccc]dddd]cc	chr7:138145597-138145832(+)$1	235	35	75	11.8894
ggg$$$$$ggggggg[bboooooobbgggggggggggggg	chr8:144678287-144678556(-)$1	269	127	167	13.7746
idddd[a[ccc[bb[ddddoooooodddd]bb]ccc]add	chr12:133295290-133295567(+)$1	277	156	196	14.4184
ggggggggggggg!!ddddoooooodddd333ggggggg4	chr8:144675253-144675515(-)$1	262	2	42	17.1834
!!bb[cccggggggg!!aooooooa22ggggggg333ccc	chr2:219265483-219265726(+)$1	243	124	164	14.9776
ddd[==========[eeeeeooooooeeeee]========	chr11:484488-484718(+)$1	230	20	60	15.8303
dddggggggg!!a!!ddddnnnnndddd4444a22ggggg	chr16:81514757-81515019(+)$1	262	191	231	16.0554
"iiiiiiiii####eeeeemmmmeeeeeiiiiiiiii]gg	chr5:153579535-153579804(+)$1	269	107	147	13.8283
ccc[dddd!!dddd[ddddoooooodddd]dddd]dddd]	chr22:49928197-49928440(-)$1	243	126	166	12.9111
ddda[ggggggg[bbcccooooooccc]bb]ggggggg]a	chr22:20891473-20891723(+)$1	250	73	113	14.7280
g[a!!==============[a==========ccc[ggggg	chr16:81524648-81524899(+)$1	251	43	83	13.6620
c]ccc22gggggggccc[aooooooacccggggggg[ccc	chr1:230203001-230203252(+)$1	251	93	133	13.7121
fff!!==========[ccc!!ccc[=============[e	chr15:69112681-69112916(-)$1	235	73	113	13.1666
dddffffff!!ccc"""bboooooobb333cccffffff]	chr6:170860592-170860853(-)$1	261	6	46	13.1328

#otherMatches

#Seq PSSM
GCACGAGAUGUCAGUGUGCUCCGCGUACCACCUGCUUCAU	chr1:2174507-2174794(+)$1	287	214	254	13.5835
GAGGCGGCGGCGGGAACGGGUCCUCUGGGGGCUGUCGCCU	chr7:150822911-150823159(+)$1	248	21	61	17.1844
GUCCCAGAGGUGUGUUGGGAGGUCCCCACCCCUUGCCUCU	chr7:101595890-101596145(+)$1	255	158	198	13.7825
UCAUUUUGCAAGGAGAGCUGAGACGGGCUGCUCCACUGUA	chr17:46703606-46703847(-)$1	241	10	50	12.2094
cguggccuggggcguggcgaaguccguagcauggccuggg	chr4:899314-899564(-)$1	250	182	222	11.9322
GGCCAGGGGCUCUGGGAAGGCCCACGUGCAGGGUCAUUAU	chr19:3099256-3099502(+)$1	246	125	165	14.4886
GGCCCGCGCCACCCACCUGACAGCCAGGAACGUUCCGGAC	chr2:169313352-169313624(+)$1	272	172	212	12.7464
CCUCCCUCCUCUCUGAGACUGAUGGGGGCAGCAUGGGAGG	chr19:3512013-3512262(+)$1	249	46	86	12.6183
GGGCGGGGGCAGCACGUGUGGGGGAGACUUGUUGCCCCGG	chr19:42758899-42759175(-)$1	276	50	90	15.8558
GUGGCUGGCUGGACUGGGGAGGUCCCCCCUCCAUGGUGGG	chr8:144355576-144355832(+)$1	256	107	147	12.7440
CAGCCGGCGAGUCUCGCGGGGGCUUUGCAGGACCCGGGCU	chr16:75034388-75034644(+)$1	256	197	237	13.1741
CGGCGGCCGAUCAUGGUAUUUCGUGUGCGUCGUUGGCCAC	chr1:1509406-1509648(-)$1	242	84	124	16.3049
ACCCGCGCAGGUGAAGGGUGCCAGGCAACACCUGCGUGUC	chr17:80054864-80055138(-)$1	274	37	77	12.8508
aaGUUGUGUGUCACAUGGGGGGACUCGGGUGCUUAGCACA	chr19:45619232-45619523(+)$1	291	13	53	12.1817
UUUGGGGGGUGGUCCCUGUUCUGUGCAGCUCCCCUGAGGA	chr8:141635771-141636041(-)$1	270	104	144	18.0727
GAUCCUUCUGGGGUGCUGGGAUGUGGGGAUCUUGGCAGGC	chr16:88582212-88582458(+)$1	246	48	88	12.7062
GCGGCAGGGGCGCUGCGCCUUGUCCCUCGGCGAUACACCC	chr11:637704-637960(+)$1	256	3	43	12.6654
ggcggucucagucgcuucuaaguuuugguaaaaacgaaug	chr16:89012209-89012450(-)$1	241	119	159	12.6631
AGGGGCCCUGCACCCAGGUGCAGCUGCUUGGGUGCUGCCA	chr16:15240954-15241212(-)$1	258	135	175	17.1109
acgcgugugucgcaugugggcauguauaugugcacacgug	chr16:87524293-87524567(-)$1	274	114	154	14.1639
UACCUGGUGUCAUAUAUGCGGUGUGUAUAGUACCAGGUGU	chr10:182486-182763(+)$1	277	155	195	14.0812
AGUGGGCUUGUGGCCUGUGGGGCCAUCUGGCCAUGAGCAC	chr2:242592735-242592979(+)$1	244	127	167	13.0400
UUGGGGGCUUCUGGUGACUCCUGAGGUUCUGGAGGCUGCU	chr8:145014985-145015255(-)$1	270	88	128	17.5460
GGCCGCAACCGCUGGGAGCACGUGGUUGCCACGUGGUUGG	chr5:170815383-170815658(+)$1	275	176	216	13.1162
GCUUUUGGGGUUGGGUCCUGAGGGUUCCGAUUUUGCAAGC	chr19:41107605-41107853(+)$1	248	98	138	12.6899
GUGAGGGAGGUGCCACAGCUCCGGCUGCCCACGACAGACA	chr21:46494192-46494484(+)$1	292	145	185	13.8960
GGAGCGGGCUUCGUUAGGGAUGACCCUGCCUCGCGCUUCC	chr5:61602606-61602850(+)$1	244	97	137	12.5793
AUGCCCGUUCUGGAGGCAGCCGGGCCUGCCUGCCAUCAUG	chr9:94661056-94661298(-)$1	242	163	203	12.0107
CACGUCCUGUCGCGGGUGUGCCACGCGCUCCGCGACCUCG	chr19:12806956-12807251(-)$1	295	156	196	12.6601
ACGCCUCGUCAGGUUUUCUGCUCCGGUGAACUUGGAGUGU	chr19:4984478-4984748(+)$1	270	112	152	13.1849
caacccuuugugacuggcuucguucagccucauguuuuca	chr11:67044249-67044484(+)$1	235	11	51	13.6187
gccgaggguucgaauggccucuucuccgcccugugaccuu	chr10:75758251-75758489(+)$1	238	6	46	11.8263
GCUUGUGGGUGCCUCAUCGUUCACUGAUGGAGGCACUCCA	chr19:2139592-2139858(-)$1	266	182	222	16.4532
CCUGAGCGGUGCCGGGGCGGGGAGGCAGGGCCGCCGCUCA	chr9:139715802-139716054(+)$1	252	48	88	15.7821
ACCUUUUCUCCGGUUGGGCUAGUUCGCUCUCGGGGAAGAA	chr3:44903683-44903990(+)$1	307	217	257	14.8635
UACACAGUGCAAUCUCCUACACAGAGGGAUUGCACCCAGU	chr19:18618443-18618722(-)$1	279	156	196	13.2638
UGCGAGUUGUCGUGCGAGGAGGAAAGUUUUCAAUAUGGCG	chr1:202776578-202776875(-)$1	297	109	149	14.9634
ACUGUGGGCCAGCUGGCAGUGGGAUGAGGCUGGCCCCCUC	chr5:34191454-34191712(-)$1	258	186	226	16.3595
CUGGAACCGGUGUUUGCGGAAACCGACCAACGCCGCCCAG	chr22:49981130-49981376(-)$1	246	39	79	13.8211
GCCAGUCCGGGCCACGGUUGGGACCCAGUCGAGGGUCGGA	chr11:64073194-64073454(+)$1	260	129	169	13.3903
ACCUGGGUGAAGCCGUGAGAGAGCCUUCUACUUCCUCCCG	chr9:131466392-131466665(+)$1	273	145	185	12.7449
GGCUCGUCGCCGUUCGCCACCCAAGGUGAGAACCGGCCGC	chr7:138145597-138145832(+)$1	235	35	75	11.8894
CUGUGAGACAGCAGCAUCUCCCCUGGGCUGCUGCAGGGUU	chr8:144678287-144678556(-)$1	269	127	167	13.7746
CGGCUCGGGGUGUCCGCUCCCCUCUGGGUCGAGGCCACAG	chr12:133295290-133295567(+)$1	277	156	196	14.4184
CAGGACACCUAGUGUCUCCAGCCGAGGAGUGAACUGGGUG	chr8:144675253-144675515(-)$1	262	2	42	17.1834
ACGCUGCCCCCAGGUCUGCCCACCCUCGCCUGGGUCUGGC	chr2:219265483-219265726(+)$1	243	124	164	14.9776
UGCGUGUGUGCUGUGUGCGCAGGAGAGUGUAAACAGUGCA	chr11:484488-484718(+)$1	230	20	60	15.8303
gagggccuugagcgacuguguguaacagaugaggacaggg	chr16:81514757-81515019(+)$1	262	191	231	16.0554
GUCUGUGGGUCUGCCCCUGCUCACAGGGACUUGCGGAGGC	chr5:153579535-153579804(+)$1	269	107	147	13.8283
CCUCGUUAAAUGUCACGCUGAGCGGGGUGCGACGGUGACC	chr22:49928197-49928440(-)$1	243	126	166	12.9111
CACAGACUCUGGAACCCCUCUGUUGGGUGUCCUAGGGUGU	chr22:20891473-20891723(+)$1	250	73	113	14.7280
UAGGGGUUUUGUGGUGGGUUCCUGUUCCUGACCCAUGUGG	chr16:81524648-81524899(+)$1	251	43	83	13.6620
UGUACUCGGGGGGCGGCUCUGCGCUggccgggggcgcggg	chr1:230203001-230203252(+)$1	251	93	133	13.7121
CCGCUGCCCUUGGUGUGUGACUACCUGUGCGUGUGCUCCC	chr15:69112681-69112916(-)$1	235	73	113	13.1666
gugugaaguugagccaggacuuaauucauagcuauuucac	chr6:170860592-170860853(-)$1	261	6	46	13.1328

#DB
))))).((((.(((.((((.....))))...)))...)))	chr1:2174507-2174794(+)$1	1	214	254	13.5835
(((((((((((.....(((.....)))...))))))))))	chr7:150822911-150823159(+)$1	1	21	61	17.1844
)))))((((((..(.((((.....))))...)..))))))	chr7:101595890-101596145(+)$1	1	158	198	13.7825
.((...((((.((((((((......)))).))))..))))	chr17:46703606-46703847(-)$1	1	10	50	12.2094
(((..((((((.(((((((.....)))..)))).))))))	chr4:899314-899564(-)$1	1	182	222	11.9322
.(((((((((((((.(..(.....).).)))))))....)	chr19:3099256-3099502(+)$1	1	125	165	14.4886
(.((((((((((...((((.....))))...))...)).)	chr2:169313352-169313624(+)$1	1	172	212	12.7464
((((((..((((((.(......).)))).))...))))))	chr19:3512013-3512262(+)$1	1	46	86	12.6183
)))(.(((((((((.((.(.....).)).))))))))).)	chr19:42758899-42759175(-)$1	1	50	90	15.8558
.(((((.((((((..((((....))))..)))..))).))	chr8:144355576-144355832(+)$1	1	107	147	12.7440
(((((.(.(.((((.((((.....)))).)))))).))))	chr16:75034388-75034644(+)$1	1	197	237	13.1741
)((.(((((((....((((.....))))...))))))).)	chr1:1509406-1509648(-)$1	1	84	124	16.3049
.)))(((((((((....((.....))..)))))))))..(	chr17:80054864-80055138(-)$1	1	37	77	12.8508
((((.(((((((((.((((....)))).)))....)))))	chr19:45619232-45619523(+)$1	1	13	53	12.1817
(((((((((.(....((((.....))))))))))))))))	chr8:141635771-141636041(-)$1	1	104	144	18.0727
))(((((((((.((((((((((......)))))))))...	chr16:88582212-88582458(+)$1	1	48	88	12.7062
((((...(((.(...((((.........))))...).)))	chr11:637704-637960(+)$1	1	3	43	12.6654
((.(((.(((.(((.((((((...)))).))...))).))	chr16:89012209-89012450(-)$1	1	119	159	12.6631
((((((.(.((((((((((......)))))))))).)...	chr16:15240954-15241212(-)$1	1	135	175	17.1109
(((((((((.((((((((......))))))))))))))))	chr16:87524293-87524567(-)$1	1	114	154	14.1639
(((((((((.(.(((((((...))))))))))))))))).	chr10:182486-182763(+)$1	1	155	195	14.0812
))).)((((((((((.(((....)))..))))))))))..	chr2:242592735-242592979(+)$1	1	127	167	13.0400
((((.(((((((((.((((.....))))))))))))).))	chr8:145014985-145015255(-)$1	1	88	128	17.5460
..((.((((((((((.(((.....))).))).))))))).	chr5:170815383-170815658(+)$1	1	176	216	13.1162
((((.((((((((((.((....)).)))))))))).))))	chr19:41107605-41107853(+)$1	1	98	138	12.6899
(((...(..(((...((((....))))..)))..)...))	chr21:46494192-46494484(+)$1	1	145	185	13.8960
((((((.(....((.((((....))))))..).)))))))	chr5:61602606-61602850(+)$1	1	97	137	12.5793
..((.(((..(((((((((......)))))).)))..)))	chr9:94661056-94661298(-)$1	1	163	203	12.0107
((((....((((((((((((...))))).)))))))..))	chr19:12806956-12807251(-)$1	1	156	196	12.6601
(((((((..(((((((.(((...))).)))))))))).))	chr19:4984478-4984748(+)$1	1	112	152	13.1849
.....(((((.(((.((((......))))....)))..))	chr11:67044249-67044484(+)$1	1	11	51	13.6187
(((((((..(((...(((.........)))...)))))))	chr10:75758251-75758489(+)$1	1	6	46	11.8263
(((((.(((((((((((((.....)))).)))))))))))	chr19:2139592-2139858(-)$1	1	182	222	16.4532
(((((((((((((...((......))..)).)))))))))	chr9:139715802-139716054(+)$1	1	48	88	15.7821
...((((((((((..((((......)))))))))))))).	chr3:44903683-44903990(+)$1	1	217	257	14.8635
(.(((.((((((((.(((......)))))))))))...))	chr19:18618443-18618722(-)$1	1	156	196	13.2638
(.(..(((((((((.(((((......)))))..)))))))	chr1:202776578-202776875(-)$1	1	109	149	14.9634
...(.(((((((((..((......)).)))))))))).))	chr5:34191454-34191712(-)$1	1	186	226	16.3595
((((...(((((((.((((...))).).))))))).))))	chr22:49981130-49981376(-)$1	1	39	79	13.8211
((((((((((.((.(((((((...))))))).)).)))))	chr11:64073194-64073454(+)$1	1	129	169	13.3903
.((((((.((((....(((.....)))...))))..))))	chr9:131466392-131466665(+)$1	1	145	185	12.7449
(((.(((.(((((((..((((...)))).))).)))).))	chr7:138145597-138145832(+)$1	1	35	75	11.8894
(((.....(((((((.((......))))))))))))))))	chr8:144678287-144678556(-)$1	1	127	167	13.7746
(((((.(.(((.((.((((......)))).)).))).)))	chr12:133295290-133295567(+)$1	1	156	196	14.4184
(((((((((((((..((((......))))...))))))).	chr8:144675253-144675515(-)$1	1	2	42	17.1834
..((.((((((((((..(......)..)))))))...)))	chr2:219265483-219265726(+)$1	1	124	164	14.9776
(((.((((((((((.(((((......))))).))))))))	chr11:484488-484718(+)$1	1	20	60	15.8303
((((((((((..(..((((.....))))....)..)))))	chr16:81514757-81515019(+)$1	1	191	231	16.0554
.(((((((((....(((((....)))))))))))))).))	chr5:153579535-153579804(+)$1	1	107	147	13.8283
(((.((((..((((.((((......)))).)))).)))).	chr22:49928197-49928440(-)$1	1	126	166	12.9111
((((.(((((((.(((((......))).)).))))))).)	chr22:20891473-20891723(+)$1	1	73	113	14.7280
(.(..((((((((((((((.((((((((((((((.(((((	chr16:81524648-81524899(+)$1	1	43	83	13.6620
).)))..)))))))(((.(......))))(((((((.(((	chr1:230203001-230203252(+)$1	1	93	133	13.7121
(((..((((((((((.(((..(((.(((((((((((((.(	chr15:69112681-69112916(-)$1	1	73	113	13.1666
(((((((((..(((...((......))...))))))))).	chr6:170860592-170860853(-)$1	1	6	46	13.1328

#PSSM
d : 0.25	g : 0.14	c : 0.10	= : 0.09	e : 0.07	" : 0.07	f : 0.05	[ : 0.03	! : 0.03	i : 0.03	: : 0.03	m : 0.01	b : 0.01	$ : 0.01	
d : 0.27	g : 0.12	= : 0.09	f : 0.09	[ : 0.07	c : 0.07	b : 0.05	e : 0.05	i : 0.03	: : 0.03	" : 0.03	$ : 0.01	! : 0.01	] : 0.01	
d : 0.27	g : 0.12	b : 0.10	= : 0.09	f : 0.09	e : 0.07	c : 0.07	i : 0.05	a : 0.03	[ : 0.01	$ : 0.01	: : 0.01	" : 0.01	
d : 0.14	= : 0.10	g : 0.10	f : 0.09	! : 0.07	b : 0.07	[ : 0.07	c : 0.07	a : 0.05	e : 0.05	i : 0.05	" : 0.03	$ : 0.03	] : 0.01	
[ : 0.16	= : 0.12	g : 0.10	f : 0.09	c : 0.09	d : 0.07	" : 0.07	! : 0.07	i : 0.07	e : 0.05	$ : 0.03	a : 0.01	# : 0.01	
= : 0.20	g : 0.14	i : 0.14	f : 0.10	c : 0.09	" : 0.07	[ : 0.07	e : 0.05	d : 0.03	: : 0.01	# : 0.01	$ : 0.01	2 : 0.01	
= : 0.20	i : 0.16	f : 0.10	g : 0.09	d : 0.07	[ : 0.07	c : 0.07	a : 0.05	" : 0.03	e : 0.03	! : 0.01	# : 0.01	h : 0.01	$ : 0.01	2 : 0.01	
= : 0.20	i : 0.16	g : 0.14	c : 0.09	d : 0.07	f : 0.07	! : 0.07	[ : 0.07	a : 0.03	# : 0.01	e : 0.01	h : 0.01	$ : 0.01	
= : 0.20	g : 0.20	i : 0.16	! : 0.09	d : 0.07	f : 0.07	c : 0.07	b : 0.03	a : 0.01	[ : 0.01	# : 0.01	e : 0.01	h : 0.01	
g : 0.21	= : 0.18	i : 0.14	c : 0.10	d : 0.07	[ : 0.07	f : 0.05	! : 0.05	b : 0.03	# : 0.01	e : 0.01	h : 0.01	
g : 0.20	= : 0.16	i : 0.12	[ : 0.10	d : 0.09	c : 0.09	f : 0.05	a : 0.03	h : 0.03	# : 0.03	! : 0.03	b : 0.01	
g : 0.18	c : 0.16	= : 0.12	d : 0.10	i : 0.10	[ : 0.07	# : 0.07	b : 0.05	! : 0.03	h : 0.03	$ : 0.01	a : 0.01	
c : 0.16	g : 0.16	= : 0.12	i : 0.10	d : 0.09	" : 0.07	# : 0.07	b : 0.07	a : 0.03	h : 0.03	$ : 0.01	! : 0.01	[ : 0.01	
g : 0.14	c : 0.12	i : 0.10	= : 0.10	d : 0.09	" : 0.09	# : 0.09	! : 0.07	b : 0.05	h : 0.03	$ : 0.01	a : 0.01	f : 0.01	[ : 0.01	
[ : 0.30	" : 0.10	g : 0.10	! : 0.09	= : 0.09	# : 0.07	c : 0.05	d : 0.03	i : 0.03	$ : 0.01	h : 0.01	f : 0.01	e : 0.01	b : 0.01	
d : 0.38	[ : 0.09	e : 0.07	c : 0.07	a : 0.05	g : 0.05	! : 0.05	b : 0.03	# : 0.03	= : 0.03	" : 0.03	$ : 0.01	i : 0.01	h : 0.01	f : 0.01	
d : 0.36	c : 0.20	b : 0.10	e : 0.07	! : 0.05	= : 0.03	g : 0.03	o : 0.01	# : 0.01	i : 0.01	h : 0.01	f : 0.01	[ : 0.01	" : 0.01	
d : 0.40	c : 0.20	b : 0.10	e : 0.07	[ : 0.03	= : 0.03	g : 0.03	! : 0.01	o : 0.01	i : 0.01	h : 0.01	f : 0.01	a : 0.01	
d : 0.40	c : 0.14	o : 0.14	e : 0.07	a : 0.05	b : 0.03	= : 0.03	g : 0.03	i : 0.01	m : 0.01	f : 0.01	r : 0.01	
o : 0.32	n : 0.29	m : 0.12	e : 0.05	r : 0.03	d : 0.03	l : 0.03	i : 0.01	c : 0.01	g : 0.01	[ : 0.01	! : 0.01	
o : 0.36	n : 0.29	m : 0.12	l : 0.07	r : 0.03	d : 0.03	i : 0.01	g : 0.01	a : 0.01	! : 0.01	
o : 0.36	n : 0.29	m : 0.12	l : 0.12	r : 0.03	i : 0.01	= : 0.01	c : 0.01	
o : 0.36	n : 0.29	m : 0.10	l : 0.09	r : 0.03	c : 0.03	a : 0.01	g : 0.01	b : 0.01	= : 0.01	
o : 0.36	n : 0.29	d : 0.07	c : 0.07	l : 0.05	r : 0.03	e : 0.03	] : 0.01	g : 0.01	b : 0.01	= : 0.01	
d : 0.29	o : 0.23	c : 0.16	b : 0.07	a : 0.05	r : 0.03	g : 0.03	e : 0.03	h : 0.01	] : 0.01	= : 0.01	[ : 0.01	
d : 0.40	c : 0.14	b : 0.09	= : 0.07	] : 0.05	o : 0.05	r : 0.03	g : 0.03	e : 0.03	h : 0.01	f : 0.01	2 : 0.01	a : 0.01	
d : 0.40	c : 0.12	2 : 0.07	= : 0.07	e : 0.07	g : 0.05	a : 0.03	b : 0.03	r : 0.03	] : 0.03	o : 0.01	h : 0.01	f : 0.01	
d : 0.32	2 : 0.10	] : 0.09	g : 0.09	= : 0.07	e : 0.07	3 : 0.05	b : 0.03	h : 0.03	c : 0.03	o : 0.01	r : 0.01	f : 0.01	i : 0.01	
3 : 0.12	d : 0.12	g : 0.12	] : 0.12	i : 0.09	= : 0.09	c : 0.07	2 : 0.05	b : 0.05	h : 0.03	e : 0.03	a : 0.01	f : 0.01	4 : 0.01	
3 : 0.14	g : 0.14	i : 0.12	= : 0.12	c : 0.10	b : 0.07	] : 0.05	d : 0.05	h : 0.03	4 : 0.03	e : 0.03	a : 0.01	2 : 0.01	f : 0.01	
= : 0.14	g : 0.14	i : 0.14	3 : 0.10	d : 0.10	c : 0.10	b : 0.05	h : 0.03	4 : 0.03	] : 0.03	e : 0.03	2 : 0.01	f : 0.01	
g : 0.16	= : 0.14	i : 0.14	c : 0.10	d : 0.10	3 : 0.07	] : 0.07	4 : 0.05	a : 0.03	b : 0.03	h : 0.03	2 : 0.01	
g : 0.20	= : 0.18	i : 0.14	d : 0.09	c : 0.07	2 : 0.07	3 : 0.07	] : 0.05	b : 0.03	4 : 0.03	h : 0.01	a : 0.01	
g : 0.21	= : 0.18	i : 0.16	c : 0.10	2 : 0.07	d : 0.07	3 : 0.07	] : 0.01	a : 0.01	4 : 0.01	h : 0.01	b : 0.01	f : 0.01	
g : 0.20	= : 0.18	i : 0.16	c : 0.12	3 : 0.07	f : 0.05	2 : 0.05	a : 0.03	] : 0.03	4 : 0.01	h : 0.01	d : 0.01	[ : 0.01	
g : 0.20	= : 0.16	i : 0.16	c : 0.10	3 : 0.09	f : 0.07	] : 0.07	2 : 0.05	d : 0.03	4 : 0.01	a : 0.01	
= : 0.16	g : 0.16	i : 0.14	f : 0.09	d : 0.09	3 : 0.07	c : 0.05	2 : 0.05	e : 0.03	] : 0.03	a : 0.03	4 : 0.01	b : 0.01	[ : 0.01	
= : 0.16	g : 0.16	] : 0.12	d : 0.09	f : 0.09	i : 0.07	c : 0.07	3 : 0.05	e : 0.03	2 : 0.03	4 : 0.01	b : 0.01	: : 0.01	> : 0.01	a : 0.01	
d : 0.16	g : 0.14	= : 0.12	c : 0.12	f : 0.10	e : 0.10	] : 0.07	: : 0.03	i : 0.03	4 : 0.01	> : 0.01	3 : 0.01	[ : 0.01	
d : 0.16	c : 0.14	e : 0.12	= : 0.10	f : 0.10	g : 0.10	] : 0.07	a : 0.03	: : 0.03	b : 0.01	> : 0.01	3 : 0.01	i : 0.01	4 : 0.01	

#score	770.2025221186982
#seq	55
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_UTR_m3_run2.txt

#BEAR
BB{A{DDDDKKFFFFFFCC	chr12:56554868-56555123(+)$1	255	135	154	7.6617
C{AKKDDDDHHHHHHHH::	chr17:66031922-66032178(+)$1	256	10	29	7.7752
DDCCCDDDDGGGGGGGZZZ	chr7:5569356-5569623(-)$1	267	239	258	10.8673
FFFFF~~~~FFFFFF::::	chr11:62609091-62609322(-)$1	231	129	148	10.1147
FFFFF~~~~FFFFFF::::	chr11:62609122-62609357(-)$1	235	164	183	10.1147
EEEEEKKBB:FFFFFF:::	chr17:46052349-46052635(+)$1	286	5	24	8.3977
f:::DDDD}GGGGGGG:::	chr19:18682642-18682916(+)$1	274	253	272	8.0186
HHHHHHHYYGGGGGGG:::	chr17:46053121-46053361(+)$1	240	114	133	8.2766
DDD}CCCZZZFFFFFFZZZ	chr11:72414344-72414560(-)$1	216	128	147	9.7200
EE}CCC}BBFFFFFF{CCC	chr6:43738480-43738702(+)$1	222	91	110	10.1043
EEEEYYBBYYFFFFFF}CC	chr17:74732714-74732970(-)$1	256	165	184	10.6576
ccCCCYYA}GGGGGGGZZZ	chr3:100428670-100428988(+)$1	318	201	220	9.9841
C}A}CCCYYGGGGGGG:::	chr19:49122183-49122425(-)$1	242	160	179	10.3278
EEEEE}DDDDFFFFFF}II	chr1:245026262-245026521(-)$1	259	195	214	9.1551

#otherMatches

#Seq PSSM
GGAGAACUGGUCAGACUCA	chr12:56554868-56555123(+)$1	255	135	154	7.6617
UGGAAGCCCAGGCCCGCUU	chr17:66031922-66032178(+)$1	256	10	29	7.7752
gcgcccccuggcggccUAA	chr7:5569356-5569623(-)$1	267	239	258	10.8673
uauuaaauggauuuuugga	chr11:62609091-62609322(-)$1	231	129	148	10.1147
uauuaaauggauuuuugga	chr11:62609122-62609357(-)$1	235	164	183	10.1147
gguuggauuagagggguua	chr17:46052349-46052635(+)$1	286	5	24	8.3977
GAGAGGAGCCUGCCUGCUC	chr19:18682642-18682916(+)$1	274	253	272	8.0186
CCCACAGAGCAGGUGUUGC	chr17:46053121-46053361(+)$1	240	114	133	8.2766
GAGCUUGAGAUCCUCUGGA	chr11:72414344-72414560(-)$1	216	128	147	9.7200
GGGGGUCGGGGCUCGCGGC	chr6:43738480-43738702(+)$1	222	91	110	10.1043
GGCGAAGCACGUGGUGCGG	chr17:74732714-74732970(-)$1	256	165	184	10.6576
CAGCUAAUGCCUUGGUGCA	chr3:100428670-100428988(+)$1	318	201	220	9.9841
UACUCUGGGGGCCAGGAAA	chr19:49122183-49122425(-)$1	242	160	179	10.3278
CCCCCUCUCUGCGCUCUCU	chr1:245026262-245026521(-)$1	259	195	214	9.1551

#DB
((.(.((((..((((((((	chr12:56554868-56555123(+)$1	1	135	154	7.6617
(.(..((((((((((((..	chr17:66031922-66032178(+)$1	1	10	29	7.7752
))))))))))))))))...	chr7:5569356-5569623(-)$1	1	239	258	10.8673
)))))....))))))....	chr11:62609091-62609322(-)$1	1	129	148	10.1147
)))))....))))))....	chr11:62609122-62609357(-)$1	1	164	183	10.1147
(((((..((.((((((...	chr17:46052349-46052635(+)$1	1	5	24	8.3977
)...)))).)))))))...	chr19:18682642-18682916(+)$1	1	253	272	8.0186
)))))))..)))))))...	chr17:46053121-46053361(+)$1	1	114	133	8.2766
))).)))...))))))...	chr11:72414344-72414560(-)$1	1	128	147	9.7200
)).))).))((((((.(((	chr6:43738480-43738702(+)$1	1	91	110	10.1043
))))..))..)))))).))	chr17:74732714-74732970(-)$1	1	165	184	10.6576
)))))..).)))))))...	chr3:100428670-100428988(+)$1	1	201	220	9.9841
).).)))..)))))))...	chr19:49122183-49122425(-)$1	1	160	179	10.3278
))))).)))))))))).))	chr1:245026262-245026521(-)$1	1	195	214	9.1551

#PSSM
E : 0.28	C : 0.14	D : 0.14	F : 0.14	B : 0.07	f : 0.07	H : 0.07	c : 0.07	
E : 0.28	D : 0.14	F : 0.14	B : 0.07	{ : 0.07	: : 0.07	H : 0.07	c : 0.07	} : 0.07	
E : 0.21	A : 0.14	C : 0.14	F : 0.14	{ : 0.07	: : 0.07	H : 0.07	D : 0.07	} : 0.07	
C : 0.21	E : 0.21	F : 0.14	} : 0.14	A : 0.07	K : 0.07	: : 0.07	H : 0.07	
C : 0.35	F : 0.14	E : 0.14	{ : 0.07	K : 0.07	D : 0.07	H : 0.07	Y : 0.07	
D : 0.28	C : 0.21	~ : 0.14	Y : 0.14	K : 0.07	H : 0.07	} : 0.07	
D : 0.35	~ : 0.14	C : 0.14	K : 0.07	H : 0.07	} : 0.07	B : 0.07	Y : 0.07	
D : 0.35	B : 0.21	~ : 0.14	Y : 0.14	Z : 0.07	A : 0.07	
D : 0.28	Y : 0.21	~ : 0.14	B : 0.14	} : 0.14	Z : 0.07	
G : 0.35	F : 0.21	K : 0.07	H : 0.07	: : 0.07	Z : 0.07	Y : 0.07	D : 0.07	
F : 0.49	G : 0.35	K : 0.07	H : 0.07	
F : 0.57	G : 0.35	H : 0.07	
F : 0.57	G : 0.35	H : 0.07	
F : 0.57	G : 0.35	H : 0.07	
F : 0.57	G : 0.35	H : 0.07	
F : 0.35	G : 0.35	: : 0.14	H : 0.07	{ : 0.07	
: : 0.42	Z : 0.21	} : 0.14	F : 0.07	H : 0.07	C : 0.07	
: : 0.49	C : 0.21	Z : 0.21	I : 0.07	
: : 0.49	C : 0.21	Z : 0.21	I : 0.07	

#score	131.17594100997854
#seq	14
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_UTR_m1_run1.txt

#BEAR
a[ddddxxxxxxxxxxxxxxxddd	chr3:128211706-128211991(+)$1	285	73	97	16.1022
c[eeeeewwwwwwwwwwwwwweee	chrX:152953652-152953892(+)$1	240	143	167	18.8718
eeee[dddduuuuuuuuuuuuddd	chr3:128211661-128211906(+)$1	245	21	45	16.6018
cceeeee[assssssssssaeeee	chr17:27047515-27047735(+)$1	220	130	154	15.2504
b[eeeee!!cccooooooccc]ee	chr11:611844-612083(+)$1	239	99	123	8.0872
eeeee^^^^^^^^^^^^^^^^^^e	chrM:8450-8675(+)$1	225	142	166	15.2405
eeee[ddddssssssssssdddde	chr20:1165115-1165373(-)$1	258	2	26	13.0653
b[eeeeeyyyyyyyyyyyyyyyye	chr17:79878091-79878343(-)$1	252	220	244	17.5487
ddffffff^^^^^^^^^^^^^^^^	chr7:111928873-111929110(+)$1	237	125	149	13.1314
!bb[a[a[arrrrrrrrra]a]a]	chr6:34664376-34664664(-)$1	288	104	128	11.6587
ccc[a[bbuuuuuuuuuuuubb]a	chr6:31698293-31698552(-)$1	259	210	234	16.2368
hhhhh"""bbrrrrrrrrrbb333	chr4:174253099-174253320(-)$1	221	71	95	11.6057
cceeeee[assssssssssaeeee	chr17:27047468-27047715(+)$1	247	177	201	15.2504
hhhhh"""bbrrrrrrrrrbb333	chr4:174253120-174253335(-)$1	215	86	110	11.6057

#otherMatches

#Seq PSSM
ggccUGGAGUAGAGCUGGGAGCAG	chr3:128211706-128211991(+)$1	285	73	97	16.1022
CAUGAGAUUCUUCAGGCUCACUUU	chrX:152953652-152953892(+)$1	240	143	167	18.8718
ggccgggccgggggcgggAAGGGC	chr3:128211661-128211906(+)$1	245	21	45	16.6018
GUGGCCCACUGCAGUUCUUGGGGC	chr17:27047515-27047735(+)$1	220	130	154	15.2504
CUGACACCUGGUCUGUGCACCUGU	chr11:611844-612083(+)$1	239	99	123	8.0872
GAUCAUUCUAUUUCCCCCUCUAUU	chrM:8450-8675(+)$1	225	142	166	15.2405
GCGGCGGGUGGGGUAUUGGGCCCC	chr20:1165115-1165373(-)$1	258	2	26	13.0653
GUCAGCCUGAAAAUGGAAAUAUUG	chr17:79878091-79878343(-)$1	252	220	244	17.5487
ccuuucuuaaaaaaaaaaaaaaaa	chr7:111928873-111929110(+)$1	237	125	149	13.1314
agAGUGAGUGAGUGGCAGAGUGAG	chr6:34664376-34664664(-)$1	288	104	128	11.6587
UGGGCGACAUGGAAUGAGGGGUGG	chr6:31698293-31698552(-)$1	259	210	234	16.2368
ggaugaagaugaagaaUAAAUGGC	chr4:174253099-174253320(-)$1	221	71	95	11.6057
GUGGCCCACUGCAGUUCUUGGGGC	chr17:27047468-27047715(+)$1	247	177	201	15.2504
ggaugaagaugaagaaUAAAUGGC	chr4:174253120-174253335(-)$1	215	86	110	11.6057

#DB
(.((((...............)))	chr3:128211706-128211991(+)$1	1	73	97	16.1022
(.(((((..............)))	chrX:152953652-152953892(+)$1	1	143	167	18.8718
((((.((((............)))	chr3:128211661-128211906(+)$1	1	21	45	16.6018
))(((((.(..........)))))	chr17:27047515-27047735(+)$1	1	130	154	15.2504
(.(((((..(((......))).))	chr11:611844-612083(+)$1	1	99	123	8.0872
(((((..................)	chrM:8450-8675(+)$1	1	142	166	15.2405
((((.((((..........)))))	chr20:1165115-1165373(-)$1	1	2	26	13.0653
(.(((((................)	chr17:79878091-79878343(-)$1	1	220	244	17.5487
))((((((................	chr7:111928873-111929110(+)$1	1	125	149	13.1314
.((.(.(.(.........).).).	chr6:34664376-34664664(-)$1	1	104	128	11.6587
(((.(.((............)).)	chr6:31698293-31698552(-)$1	1	210	234	16.2368
(((((...((.........))...	chr4:174253099-174253320(-)$1	1	71	95	11.6057
))(((((.(..........)))))	chr17:27047468-27047715(+)$1	1	177	201	15.2504
(((((...((.........))...	chr4:174253120-174253335(-)$1	1	86	110	11.6057

#PSSM
c : 0.28	e : 0.21	b : 0.14	h : 0.14	a : 0.07	d : 0.07	! : 0.07	
[ : 0.28	e : 0.21	c : 0.21	h : 0.14	d : 0.07	b : 0.07	
e : 0.57	h : 0.14	d : 0.07	f : 0.07	b : 0.07	c : 0.07	
e : 0.57	[ : 0.14	h : 0.14	d : 0.07	f : 0.07	
e : 0.42	[ : 0.14	a : 0.14	h : 0.14	d : 0.07	f : 0.07	
e : 0.35	d : 0.21	[ : 0.14	" : 0.14	^ : 0.07	f : 0.07	
e : 0.35	d : 0.14	" : 0.14	x : 0.07	^ : 0.07	f : 0.07	a : 0.07	b : 0.07	
[ : 0.21	d : 0.14	" : 0.14	x : 0.07	w : 0.07	! : 0.07	^ : 0.07	y : 0.07	f : 0.07	b : 0.07	
a : 0.21	d : 0.14	^ : 0.14	b : 0.14	x : 0.07	w : 0.07	! : 0.07	y : 0.07	u : 0.07	
s : 0.21	u : 0.14	^ : 0.14	b : 0.14	x : 0.07	w : 0.07	c : 0.07	y : 0.07	r : 0.07	
s : 0.21	r : 0.21	u : 0.14	^ : 0.14	x : 0.07	w : 0.07	c : 0.07	y : 0.07	
s : 0.21	r : 0.21	u : 0.14	^ : 0.14	x : 0.07	w : 0.07	c : 0.07	y : 0.07	
s : 0.21	r : 0.21	u : 0.14	^ : 0.14	x : 0.07	w : 0.07	o : 0.07	y : 0.07	
s : 0.21	r : 0.21	u : 0.14	^ : 0.14	x : 0.07	w : 0.07	o : 0.07	y : 0.07	
s : 0.21	r : 0.21	u : 0.14	^ : 0.14	x : 0.07	w : 0.07	o : 0.07	y : 0.07	
s : 0.21	r : 0.21	u : 0.14	^ : 0.14	x : 0.07	w : 0.07	o : 0.07	y : 0.07	
s : 0.21	r : 0.21	u : 0.14	^ : 0.14	x : 0.07	w : 0.07	o : 0.07	y : 0.07	
s : 0.21	r : 0.21	u : 0.14	^ : 0.14	x : 0.07	w : 0.07	o : 0.07	y : 0.07	
s : 0.21	u : 0.14	^ : 0.14	r : 0.14	x : 0.07	w : 0.07	c : 0.07	y : 0.07	a : 0.07	
u : 0.14	a : 0.14	^ : 0.14	b : 0.14	x : 0.07	w : 0.07	c : 0.07	d : 0.07	y : 0.07	] : 0.07	
b : 0.21	e : 0.14	^ : 0.14	x : 0.07	w : 0.07	u : 0.07	c : 0.07	d : 0.07	y : 0.07	a : 0.07	
d : 0.21	e : 0.21	] : 0.14	^ : 0.14	3 : 0.14	y : 0.07	b : 0.07	
e : 0.28	d : 0.21	^ : 0.14	3 : 0.14	y : 0.07	a : 0.07	] : 0.07	
e : 0.49	d : 0.14	3 : 0.14	^ : 0.07	] : 0.07	a : 0.07	

#score	200.25748670685
#seq	14
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_transcript_m1_run2.txt

#BEAR
eeee!!bb[dddd!!bbnnnnnbb22ddddbb22ee	chr9:128001406-128001647(-)$1	241	88	124	13.1154
fffffdddd[gggggggnnnnnggggggg22ddddD	chr3:197680862-197681121(+)$1	259	194	230	13.6081
c[eeeee[ccc!!ddddnnnnndddd4444ccc]ee	chr1:173450364-173450578(+)$1	214	23	59	14.3421
dd"""ccc!!gggggggnnnnnggggggg]ccc22d	chr7:5644898-5645153(+)$1	255	181	217	15.6570
gggggg!!dddd[ddddnnnnndddd]dddd4444g	chr9:35060211-35060450(-)$1	239	187	223	14.3353
eee[dddd!!gggggggnnnnnggggggg]dddd]e	chr8:11687810-11688030(+)$1	220	162	198	15.6888
:ccc[ccc[bb!!ddddnnnnndddd]bb]ccc22c	chr9:35072335-35072544(-)$1	209	54	90	12.8144
ffff[bb!!ccc[acccooooooccc]a]ccc4444	chr6:26204760-26204994(+)$1	234	7	43	12.6741
fff"""ccc[dddd[bbnnnnnbb22dddd]ccc22	chr11:122930080-122930289(-)$1	209	27	63	13.6290
fff[bb[dddd[a[cccnnnnnccca]dddd]bbff	chr17:39914894-39915142(-)$1	248	157	193	14.1054
eeee!!bb[dddd[cccnnnnnccc]ddddbbeeee	chr7:5569117-5569342(-)$1	225	164	200	14.3997
gggggg$$$$$ffffffnnnnnffffff]ggggggg	chr10:5842556-5842768(-)$1	212	85	121	12.9822
!a[eeeee[ccc"""bbnnnnnbb]ccc]eeeeea]	chr17:7479860-7480111(+)$1	251	26	62	14.7924
eeeeeeeeeeccc[cccnnnnnccc]ccc:ddddoo	chr11:67800542-67800804(+)$1	262	175	211	13.8701
:dddd[a[a[gggggggnnnnnggggggg]aa]ddd	chr6:159187839-159188051(-)$1	212	123	159	14.8416
b[bb[bb[dddd!!cccnnnnnccc22dddd]bb]b	chr16:31196367-31196601(+)$1	234	40	76	13.7980
dddd]eeeeegggggggnnnnngggggggeeeee!!	chr2:176042862-176043125(-)$1	263	194	230	13.9698
####ccc[hhhhhhhhannnnna]hhhhhhhh]ccc	chr1:151372466-151372713(+)$1	247	7	43	13.0775
b!!dddd!!gggggggaooooooa]gggggggdddd	chr16:30081174-30081395(+)$1	221	86	122	12.3537
:dddd[a[a[gggggggnnnnnggggggg]aa]ddd	chr6:159187851-159188061(-)$1	210	133	169	14.8416
ffffff:==========nnnnn==========ccco	chr11:18425235-18425458(+)$1	223	108	144	14.9989
[dddd[ccc[bb!!cccooooooccc]bb]ccc]dd	chr12:56552044-56552287(+)$1	243	122	158	11.9907
FFiiiiiiiiiccc[aooooooaccc333iiiiiii	chr14:103523425-103523637(-)$1	212	110	146	12.2656
FFccc[ggggggg[cccnnnnncccggggggg]ccc	chr11:18422292-18422590(+)$1	298	16	52	15.6680
cc[dddddddd[a!!bbnnnnnbb22a]dddd4444	chr3:49062457-49062686(-)$1	229	127	163	14.4563
!dddd[==========oooooo==========]ddd	chr19:9533939-9534173(-)$1	234	153	189	13.4013
b!!dddd!!gggggggaooooooa]gggggggdddd	chr16:30081195-30081433(+)$1	238	65	101	12.3537
gggggadddd[ffffffnnnnnffffff]dddd]a2	chr1:109954398-109954659(-)$1	261	104	140	13.5391
fff:a[===========oooooo===========]a	chr1:46035516-46035765(+)$1	249	28	64	12.8808
hhhhhhdddd[ccc[bbnnnnnbb22ccc]dddd]h	chr4:6642543-6642824(+)$1	281	89	125	13.1805
$gggggggeeeeecccooooooccc4444eeeee]g	chr16:30081368-30081626(+)$1	258	13	49	11.9166
ffffff===========nnnnn===========:::	chr11:18425159-18425435(+)$1	276	184	220	13.6119
fff[cccdddd[eeeeennnnneeeee]dddd]ccc	chr19:581465-581691(+)$1	226	51	87	13.4463
cc[bb!!ccc[a!!cccnnnnnccc]accc22bb33	chr16:70292832-70293066(-)$1	234	184	220	15.2420
cc[ffffff[gggggggnnnnnggggggg22fffff	chrX:133609121-133609387(+)$1	266	75	111	14.0472
333ffffffdddd[cccnnnnnccc]ddddeeeeea	chr1:151373169-151373422(+)$1	253	82	118	13.4421
####iiiiiiiii!!bbnnnnnbb333iiiiiiiii	chr12:57033680-57033885(-)$1	205	60	96	15.9899
eeeee"""eeeee[cccnnnnnccc22eeeee22ee	chr9:35713141-35713390(-)$1	249	191	227	15.0022
fffggggggg[ffffffnnnnnffffff]ggggggg	chr11:18418326-18418555(+)$1	229	144	180	13.7820
!===========!!ccclllccc22===========	chr1:45225946-45226214(+)$1	268	74	110	12.7802
iiiiiiii[iiiiiiiiimmmmiiiiiiiii]iiii	chr1:109773463-109773745(+)$1	282	215	251	11.0538
eeebbeeeee!!eeeeennnnneeeee333eeeee4	chr2:136673695-136673956(-)$1	261	15	51	13.4154
cc[bb$$$$$ccc[cccnnnnnccccccbb]cccee	chr1:45479185-45479419(+)$1	234	93	129	13.8503
!dddd####ccc[ddddnnnnndddd]cccdddd33	chr6:31701884-31702121(-)$1	237	91	127	14.3911
ccceeeee[eeeeecccnnnnnccc4444eeeee]e	chr5:43298716-43298949(-)$1	233	79	115	15.1200
b[hhhhhhhhgggggggnnnnnggggggg333hhhh	chr11:88070569-88070894(-)$1	325	154	190	13.6286
##ccc[ccc!!bb[a[annnnna]a]bb22cccccc	chr15:72501953-72502241(-)$1	288	205	241	14.4644
[eeeee"""ccc!!cccnnnnnccc22ccc]eeeee	chr6:26123694-26123943(-)$1	249	87	123	15.9832
dddd[bba[ddddddddnnnnndddd]dddd]a333	chr2:97560696-97560917(-)$1	221	105	141	13.3189
:ccc!!eeeee"""cccnnnnnccc333eeeee22c	chr15:44085867-44086133(+)$1	266	136	172	15.1942
ee####dddda[ccc[annnnnaccc]a]dddd333	chr16:30078734-30078987(+)$1	253	66	102	15.7665
!bb[ddddeeeee!!bbnnnnnbb]eeeee]dddd]	chr7:5567304-5567523(-)$1	219	56	92	13.2003
!bb[eeeee!!bb[cccooooooccc]bb22eeeee	chr7:99697171-99697389(-)$1	218	23	59	11.0977
eeeee[eeeee!!cccaooooooa]ccceeeee333	chr22:42486524-42486757(-)$1	233	174	210	12.6071
[eeeeedddd!!eeeeennnnneeeee22dddd22e	chr6:170862115-170862345(-)$1	230	5	41	13.3464
:eeeee[bb!!dddd[annnnna]dddd22bb]eee	chr16:2289842-2290088(-)$1	246	38	74	12.2082
hh$$$$$ccc!!bb!!annnnna22bb]ccc333hh	chr7:54823399-54823666(-)$1	267	140	176	12.2643
b[ccc[cccgggggggnnnnnggggggg]ccc]ccc	chr17:57760200-57760446(+)$1	246	76	112	13.5837
=========$$$$$cccnnnnnccc===========	chr19:810827-811137(+)$1	310	107	143	16.0930

#otherMatches

#Seq PSSM
CAUCCUGGUGUUUGACCUGGGUGGCGGAACCUUCGA	chr9:128001406-128001647(-)$1	241	88	124	13.1154
CAGACUAGGUUCAAGGUGUUGUGCUUUGACUUCUGA	chr3:197680862-197681121(+)$1	259	194	230	13.6081
AAGUUGUGACUUUUCAUUCUCUGUGAUGUUGGUGAU	chr1:173450364-173450578(+)$1	214	23	59	14.3421
ACCCCGCCUCGCUCUGGGAGUACUAGGGCCGGCCCG	chr7:5644898-5645153(+)$1	255	181	217	15.6570
GGAAUAGAGGCUGUUUUUCUUUAAGAGGGUUGAAAU	chr9:35060211-35060450(-)$1	239	187	223	14.3353
GUGGGGUAGGAGUAAGGGUGGAUUUUGCUGUGCUAU	chr8:11687810-11688030(+)$1	220	162	198	15.6888
AGGGAAGCCGCUUGCGGGUUUGUCGCCGCUGCUCGC	chr9:35072335-35072544(-)$1	209	54	90	12.8144
AUGCGCGUUUUCAGUCUUCAUUUAGGUCCGAAUUCC	chr6:26204760-26204994(+)$1	234	7	43	12.6741
CAGAAGCUUCUCCAAGACUUCUUCAAUGGAAAAGAA	chr11:122930080-122930289(-)$1	209	27	63	13.6290
CACACAGCAGCCCUACACGGUAUGUGAGCUGGUGGU	chr17:39914894-39915142(-)$1	248	157	193	14.1054
CCCCAGGCACCAGGUAGGGGAGCUGGCUGGGUGGGG	chr7:5569117-5569342(-)$1	225	164	200	14.3997
AUGCUUUUUCUAUAGGAAUGUAUCCUGUCAGGUAUA	chr10:5842556-5842768(-)$1	212	85	121	12.9822
UGUCACGCCUGUAUCGGGGGCACCAACGUGCGUGCU	chr17:7479860-7480111(+)$1	251	26	62	14.7924
UGCAAGCUCUGCGAGGCCAUCUGCCCCGCCCAGGUG	chr11:67800542-67800804(+)$1	262	175	211	13.8701
AGGGCAGAGGGGUGCUCAUAGCGGGCGCUGCCAGCC	chr6:159187839-159188051(-)$1	212	123	159	14.8416
cggcggcggcggcggugguggUUACAACCGCAGCAG	chr16:31196367-31196601(+)$1	234	40	76	13.7980
UUGGUGUCAUGGGAAUGUACGUUAUUUCCAAAGUCA	chr2:176042862-176043125(-)$1	263	194	230	13.9698
GGACCUCAGUCCUCGGCGUUAAGUUCGAGGGCGGAG	chr1:151372466-151372713(+)$1	247	7	43	13.0775
CGAGCCCUGCAGGCCUCUGCCCUGAAGGCCUGGGGC	chr16:30081174-30081395(+)$1	221	86	122	12.3537
AGGGCAGAGGGGUGCUCAUAGCGGGCGCUGCCAGCC	chr6:159187851-159188061(-)$1	210	133	169	14.8416
GCAGGUGGUUGAGAGGUAAUAAAUCUUUCAAUUUGG	chr11:18425235-18425458(+)$1	223	108	144	14.9989
GGAGAGCUGAGCAGUCAAGAUGGUGGGGCCCAGGUC	chr12:56552044-56552287(+)$1	243	122	158	11.9907
GCGGGCCGCGCGGCACCAUGUCGGCCAAGGUGCGGC	chr14:103523425-103523637(-)$1	212	110	146	12.2656
UGGAACAAAUUUUUGCUGCCUAGGUAAAAUUUAUUC	chr11:18422292-18422590(+)$1	298	16	52	15.6680
GGUGAGGCCCAGUACCCGUGAAGGCCAGUGGGACCC	chr3:49062457-49062686(-)$1	229	127	163	14.4563
gauccacaccggaacgugagucuguucuggugggga	chr19:9533939-9534173(-)$1	234	153	189	13.4013
CGAGCCCUGCAGGCCUCUGCCCUGAAGGCCUGGGGC	chr16:30081195-30081433(+)$1	238	65	101	12.3537
UCGUCCCUUUGGAGUAGCAUUAUUAUUUGGAGGAGU	chr1:109954398-109954659(-)$1	261	104	140	13.5391
AUCUGUCUCUCUUUCCAGGUGGAUGGGAAGAGAGUC	chr1:46035516-46035765(+)$1	249	28	64	12.8808
UGGAGGUGCUGGAGCCCGAGGAGGAUUUCGAGCAGU	chr4:6642543-6642824(+)$1	281	89	125	13.1805
UGGGUGGAUGGGACUCGGAGAAGAGCCCUUCUCACU	chr16:30081368-30081626(+)$1	258	13	49	11.9166
GCAGGUGGUUGAGAGGUAAUAAAUCUUUCAAUUUGG	chr11:18425159-18425435(+)$1	276	184	220	13.6119
UGGCUGAGGUGCUGGUGCUGGUCACCAUCAUCUUCA	chr19:581465-581691(+)$1	226	51	87	13.4463
GUAGGAUGGGCGACGGCUGAAUGCCCCCCCUCCCCA	chr16:70292832-70293066(-)$1	234	184	220	15.2420
UUUUAUUUCUGUAGGACUGAACGUCUUGCUCGAGAU	chrX:133609121-133609387(+)$1	266	75	111	14.0472
UGUGGACAUGCUUGGUGUAGCCUAUGAAGCCCCUUC	chr1:151373169-151373422(+)$1	253	82	118	13.4421
AUCCCAACAUUGUUGGCAGUGAGCAUUACGAUGUUG	chr12:57033680-57033885(-)$1	205	60	96	15.9899
UAUGCAGGUAUGUGGGCAGAGAGCCAGGCAUGGGGC	chr9:35713141-35713390(-)$1	249	191	227	15.0022
GUUGGUGCUGUUGGCAUGGCCUGUGCCAUCAGUAUC	chr11:18418326-18418555(+)$1	229	144	180	13.7820
AGCUAAAGGGAGAAUGCAUGGCAAGUUCUCUUUGGU	chr1:45225946-45226214(+)$1	268	74	110	12.7802
AAAAGAAACaaaauauauauauauauauuuuuuuuu	chr1:109773463-109773745(+)$1	282	215	251	11.0538
UUUCAGACUGAAAUUCAAACAGUGAAUAAACAGUUC	chr2:136673695-136673956(-)$1	261	15	51	13.4154
AGGUGACCAUGGUACCUGGCAAAGGACCCAGCUUCC	chr1:45479185-45479419(+)$1	234	93	129	13.8503
AUGGGGCCAAGAUUGGGAACUGCCCAUUCUCCCAGA	chr6:31701884-31702121(-)$1	237	91	127	14.3911
CUCUCUUUGCAUGACUGUGGUUCAGAAUCUUAUGGA	chr5:43298716-43298949(-)$1	233	79	115	15.1200
ACCUGCUGGGCACCUGGGUCUUCCAGGUGGGCUCCA	chr11:88070569-88070894(-)$1	325	154	190	13.6286
UUCUCUCCAGGUGAAGCAGAAAGGUACGUAUGGGAG	chr15:72501953-72502241(-)$1	288	205	241	14.4644
AGGGAGAUCCAGACGGCCGUGCGCCUGCUGCUUCCC	chr6:26123694-26123943(-)$1	249	87	123	15.9832
GUGGUCUUGCUCAUGGUGAUGGACUGUUGGGGACUU	chr2:97560696-97560917(-)$1	221	105	141	13.3189
UCGCCUGUGUGCCUGGAGCCAGUCCCACCACGCUCG	chr15:44085867-44086133(+)$1	266	136	172	15.1942
GCACCGAGAACACCGAGGAGAACCGGCGCUUCUACC	chr16:30078734-30078987(+)$1	253	66	102	15.7665
CCUCGCUGUCCACCUUCCAGCAGAUGUGGAUCAGCA	chr7:5567304-5567523(-)$1	219	56	92	13.2003
CUCAUCGGGAACAGGUGGCUCUGUAUGUGGACCUGG	chr7:99697171-99697389(-)$1	218	23	59	11.0977
CCCGGAGGCCGCCGCUCAAGGUCGUAGCCGGCCCGG	chr22:42486524-42486757(-)$1	233	174	210	12.6071
CAGCCGUGCGAUGUUGUCCUCUACAGCCAUGUAUUC	chr6:170862115-170862345(-)$1	230	5	41	13.3464
UCAUCUCCAAAGACUCCAUCCAGAAGUCCCUGCAGA	chr16:2289842-2290088(-)$1	246	38	74	12.2082
GAUUCAUUGGCUUCUUUGUGAAAUUGAUCCAUAUUC	chr7:54823399-54823666(-)$1	267	140	176	12.2643
GCCUGUGUAGAUGGGAAAGAAUUCCGUCUUGCUCAG	chr17:57760200-57760446(+)$1	246	76	112	13.5837
UUUUAAAGAGAAAUCAGUUUACCUGUUUUUAAAAAA	chr19:810827-811137(+)$1	310	107	143	16.0930

#DB
((((..((.((((..((.....))..))))))..))	chr9:128001406-128001647(-)$1	1	88	124	13.1154
)))))((((.(((((((.....)))))))..)))))	chr3:197680862-197681121(+)$1	1	194	230	13.6081
(.(((((.(((..((((.....))))....))).))	chr1:173450364-173450578(+)$1	1	23	59	14.3421
((...(((..(((((((.....))))))).)))..)	chr7:5644898-5645153(+)$1	1	181	217	15.6570
((((((..((((.((((.....)))).))))....)	chr9:35060211-35060450(-)$1	1	187	223	14.3353
(((.((((..(((((((.....))))))).)))).)	chr8:11687810-11688030(+)$1	1	162	198	15.6888
.(((.(((.((..((((.....)))).)).)))..)	chr9:35072335-35072544(-)$1	1	54	90	12.8144
((((.((..(((.((((......))).).)))....	chr6:26204760-26204994(+)$1	1	7	43	12.6741
(((...(((.((((.((.....))..)))).)))..	chr11:122930080-122930289(-)$1	1	27	63	13.6290
(((.((.((((.(.(((.....)))).)))).))))	chr17:39914894-39915142(-)$1	1	157	193	14.1054
((((..((.((((.(((.....))).))))))))))	chr7:5569117-5569342(-)$1	1	164	200	14.3997
((((((.....((((((.....)))))).)))))))	chr10:5842556-5842768(-)$1	1	85	121	12.9822
.(.(((((.(((...((.....)).))).)))))).	chr17:7479860-7480111(+)$1	1	26	62	14.7924
))))))))))(((.(((.....))).))).((((..	chr11:67800542-67800804(+)$1	1	175	211	13.8701
.((((.(.(.(((((((.....))))))).)).)))	chr6:159187839-159188051(-)$1	1	123	159	14.8416
(.((.((.((((..(((.....)))..)))).)).)	chr16:31196367-31196601(+)$1	1	40	76	13.7980
)))).)))))(((((((.....)))))))(((((..	chr2:176042862-176043125(-)$1	1	194	230	13.9698
....(((.(((((((((.....).)))))))).)))	chr1:151372466-151372713(+)$1	1	7	43	13.0775
(..((((..((((((((......).)))))))))))	chr16:30081174-30081395(+)$1	1	86	122	12.3537
.((((.(.(.(((((((.....))))))).)).)))	chr6:159187851-159188061(-)$1	1	133	169	14.8416
)))))).((((((((((.....))))))))))(((.	chr11:18425235-18425458(+)$1	1	108	144	14.9989
.((((.(((.((..(((......))).)).))).))	chr12:56552044-56552287(+)$1	1	122	158	11.9907
((((((((((((((.(......))))...)))))))	chr14:103523425-103523637(-)$1	1	110	146	12.2656
(((((.(((((((.(((.....)))))))))).)))	chr11:18422292-18422590(+)$1	1	16	52	15.6680
((.((((((((.(..((.....))..).))))....	chr3:49062457-49062686(-)$1	1	127	163	14.4563
.((((.((((((((((......)))))))))).)))	chr19:9533939-9534173(-)$1	1	153	189	13.4013
(..((((..((((((((......).)))))))))))	chr16:30081195-30081433(+)$1	1	65	101	12.3537
((((((((((.((((((.....)))))).)))).).	chr1:109954398-109954659(-)$1	1	104	140	13.5391
))).(.(((((((((((......))))))))))).)	chr1:46035516-46035765(+)$1	1	28	64	12.8808
((((((((((.(((.((.....))..))).)))).)	chr4:6642543-6642824(+)$1	1	89	125	13.1805
.(((((((((((((((......)))....))))).)	chr16:30081368-30081626(+)$1	1	13	49	11.9166
))))))(((((((((((.....)))))))))))...	chr11:18425159-18425435(+)$1	1	184	220	13.6119
(((.(((((((.(((((.....))))).)))).)))	chr19:581465-581691(+)$1	1	51	87	13.4463
((.((..(((.(..(((.....))).))))..))..	chr16:70292832-70293066(-)$1	1	184	220	15.2420
((.((((((.(((((((.....)))))))..)))))	chrX:133609121-133609387(+)$1	1	75	111	14.0472
...))))))((((.(((.....))).))))((((((	chr1:151373169-151373422(+)$1	1	82	118	13.4421
....(((((((((..((.....))...)))))))))	chr12:57033680-57033885(-)$1	1	60	96	15.9899
(((((...(((((.(((.....)))..)))))..))	chr9:35713141-35713390(-)$1	1	191	227	15.0022
)))(((((((.((((((.....)))))).)))))))	chr11:18418326-18418555(+)$1	1	144	180	13.7820
.(((((((((((..(((...)))..)))))))))))	chr1:45225946-45226214(+)$1	1	74	110	12.7802
((((((((.(((((((((....))))))))).))))	chr1:109773463-109773745(+)$1	1	215	251	11.0538
((((((((((..(((((.....)))))...))))).	chr2:136673695-136673956(-)$1	1	15	51	13.4154
((.((.....(((.(((.....)))))))).)))))	chr1:45479185-45479419(+)$1	1	93	129	13.8503
.((((....(((.((((.....)))).)))))))..	chr6:31701884-31702121(-)$1	1	91	127	14.3911
)))(((((.((((((((.....)))....))))).)	chr5:43298716-43298949(-)$1	1	79	115	15.1200
(.(((((((((((((((.....)))))))...))))	chr11:88070569-88070894(-)$1	1	154	190	13.6286
..(((.(((..((.(.(.....).).))..))))))	chr15:72501953-72502241(-)$1	1	205	241	14.4644
.(((((...(((..(((.....)))..))).)))))	chr6:26123694-26123943(-)$1	1	87	123	15.9832
((((.(((.((((((((.....)))).)))).)...	chr2:97560696-97560917(-)$1	1	105	141	13.3189
.(((..(((((...(((.....)))...)))))..)	chr15:44085867-44086133(+)$1	1	136	172	15.1942
((....(((((.(((.(.....)))).).))))...	chr16:30078734-30078987(+)$1	1	66	102	15.7665
.((.(((((((((..((.....)).))))).)))).	chr7:5567304-5567523(-)$1	1	56	92	13.2003
.((.(((((..((.(((......))).))..)))))	chr7:99697171-99697389(-)$1	1	23	59	11.0977
(((((.(((((..((((......).))))))))...	chr22:42486524-42486757(-)$1	1	174	210	12.6071
.(((((((((..(((((.....)))))..))))..)	chr6:170862115-170862345(-)$1	1	5	41	13.3464
.(((((.((..((((.(.....).))))..)).)))	chr16:2289842-2290088(-)$1	1	38	74	12.2082
((.....(((..((..(.....)..)).)))...))	chr7:54823399-54823666(-)$1	1	140	176	12.2643
(.(((.((((((((((.....))))))).))).)))	chr17:57760200-57760446(+)$1	1	76	112	13.5837
(((((((((.....(((.....))))))))))))))	chr19:810827-811137(+)$1	1	107	143	16.0930

#PSSM
f : 0.15	e : 0.13	c : 0.10	! : 0.10	: : 0.08	b : 0.08	d : 0.05	g : 0.05	# : 0.05	[ : 0.05	F : 0.03	h : 0.03	$ : 0.01	3 : 0.01	i : 0.01	= : 0.01	
e : 0.18	f : 0.15	d : 0.13	c : 0.11	[ : 0.06	g : 0.06	# : 0.05	! : 0.03	F : 0.03	h : 0.03	= : 0.03	b : 0.03	a : 0.01	3 : 0.01	i : 0.01	
e : 0.18	f : 0.15	d : 0.11	c : 0.10	[ : 0.08	g : 0.06	b : 0.05	# : 0.05	! : 0.03	i : 0.03	h : 0.03	= : 0.03	" : 0.01	3 : 0.01	$ : 0.01	
e : 0.18	d : 0.16	f : 0.10	g : 0.08	[ : 0.08	c : 0.08	b : 0.06	# : 0.05	" : 0.03	i : 0.03	h : 0.03	= : 0.03	: : 0.01	$ : 0.01	
e : 0.16	d : 0.16	f : 0.08	g : 0.08	c : 0.08	[ : 0.06	b : 0.06	! : 0.05	i : 0.05	" : 0.03	h : 0.03	= : 0.03	] : 0.01	a : 0.01	# : 0.01	$ : 0.01	
e : 0.16	[ : 0.15	d : 0.10	! : 0.06	c : 0.06	g : 0.06	b : 0.06	f : 0.06	i : 0.05	" : 0.03	h : 0.03	= : 0.03	$ : 0.03	# : 0.03	a : 0.01	
d : 0.16	e : 0.15	c : 0.13	b : 0.08	= : 0.08	$ : 0.05	i : 0.05	g : 0.05	! : 0.03	[ : 0.03	a : 0.03	f : 0.03	" : 0.03	: : 0.01	# : 0.01	h : 0.01	
d : 0.16	c : 0.13	e : 0.13	= : 0.10	[ : 0.08	! : 0.06	b : 0.05	i : 0.05	g : 0.05	$ : 0.03	f : 0.03	" : 0.03	# : 0.01	h : 0.01	a : 0.01	
d : 0.16	e : 0.15	[ : 0.11	c : 0.11	= : 0.10	! : 0.08	$ : 0.03	a : 0.03	h : 0.03	i : 0.03	g : 0.03	f : 0.03	# : 0.01	" : 0.01	b : 0.01	
d : 0.22	e : 0.15	c : 0.11	[ : 0.10	! : 0.08	g : 0.08	= : 0.08	$ : 0.05	i : 0.05	h : 0.03	b : 0.01	
g : 0.20	d : 0.16	c : 0.11	e : 0.10	! : 0.10	= : 0.08	[ : 0.06	i : 0.05	b : 0.03	$ : 0.03	h : 0.01	a : 0.01	
g : 0.20	d : 0.13	c : 0.13	! : 0.10	= : 0.08	[ : 0.06	e : 0.06	f : 0.05	b : 0.05	i : 0.03	h : 0.01	a : 0.01	" : 0.01	$ : 0.01	
g : 0.20	! : 0.13	e : 0.11	d : 0.10	c : 0.08	= : 0.06	[ : 0.05	f : 0.05	b : 0.05	a : 0.03	" : 0.03	i : 0.03	h : 0.01	$ : 0.01	
g : 0.18	! : 0.15	[ : 0.15	d : 0.11	c : 0.08	= : 0.06	e : 0.06	f : 0.05	" : 0.03	a : 0.01	h : 0.01	i : 0.01	b : 0.01	$ : 0.01	
c : 0.33	g : 0.18	d : 0.10	! : 0.08	= : 0.06	[ : 0.05	f : 0.05	e : 0.05	" : 0.01	h : 0.01	i : 0.01	a : 0.01	
c : 0.32	g : 0.18	b : 0.11	d : 0.08	= : 0.06	f : 0.05	e : 0.05	[ : 0.05	h : 0.01	a : 0.01	i : 0.01	! : 0.01	
c : 0.28	g : 0.13	a : 0.13	b : 0.11	d : 0.08	f : 0.05	= : 0.05	o : 0.05	e : 0.05	i : 0.01	n : 0.01	
n : 0.79	o : 0.16	l : 0.01	i : 0.01	
n : 0.79	o : 0.16	l : 0.01	m : 0.01	
n : 0.79	o : 0.16	l : 0.01	m : 0.01	
n : 0.79	o : 0.16	c : 0.01	m : 0.01	
n : 0.77	o : 0.16	c : 0.01	m : 0.01	g : 0.01	
c : 0.25	g : 0.15	b : 0.11	o : 0.11	a : 0.10	d : 0.08	f : 0.05	= : 0.05	e : 0.05	i : 0.01	
c : 0.32	g : 0.15	b : 0.11	d : 0.08	= : 0.06	f : 0.05	] : 0.05	a : 0.05	e : 0.05	2 : 0.03	i : 0.01	
c : 0.32	g : 0.15	2 : 0.10	d : 0.10	] : 0.08	= : 0.06	f : 0.05	e : 0.05	h : 0.01	3 : 0.01	i : 0.01	a : 0.01	
g : 0.20	c : 0.13	2 : 0.11	d : 0.10	= : 0.10	] : 0.08	e : 0.06	f : 0.05	4 : 0.03	3 : 0.03	a : 0.01	h : 0.01	i : 0.01	b : 0.01	
g : 0.20	] : 0.15	= : 0.10	d : 0.08	c : 0.08	e : 0.06	4 : 0.05	f : 0.05	2 : 0.05	3 : 0.05	a : 0.03	b : 0.03	h : 0.01	i : 0.01	
g : 0.20	d : 0.15	c : 0.13	= : 0.10	b : 0.06	4 : 0.05	f : 0.05	3 : 0.05	] : 0.05	a : 0.03	i : 0.03	e : 0.03	h : 0.01	2 : 0.01	
g : 0.18	d : 0.16	] : 0.11	c : 0.10	= : 0.10	b : 0.06	e : 0.06	4 : 0.05	2 : 0.05	3 : 0.03	i : 0.03	h : 0.01	
d : 0.22	e : 0.13	] : 0.11	c : 0.10	= : 0.10	2 : 0.08	g : 0.08	i : 0.05	3 : 0.03	4 : 0.01	: : 0.01	h : 0.01	b : 0.01	
d : 0.22	e : 0.15	c : 0.13	= : 0.10	g : 0.08	2 : 0.06	] : 0.06	b : 0.05	i : 0.05	a : 0.03	h : 0.01	3 : 0.01	
d : 0.18	e : 0.18	c : 0.15	= : 0.10	g : 0.08	] : 0.06	b : 0.05	a : 0.03	i : 0.03	3 : 0.03	4 : 0.01	h : 0.01	2 : 0.01	f : 0.01	
d : 0.18	e : 0.18	c : 0.13	] : 0.13	= : 0.06	4 : 0.05	b : 0.05	i : 0.05	2 : 0.03	g : 0.03	f : 0.01	h : 0.01	a : 0.01	3 : 0.01	
d : 0.18	e : 0.16	c : 0.13	2 : 0.10	3 : 0.06	] : 0.05	4 : 0.05	b : 0.05	i : 0.05	= : 0.05	g : 0.03	: : 0.01	f : 0.01	h : 0.01	
e : 0.16	d : 0.13	] : 0.10	c : 0.10	2 : 0.08	3 : 0.08	4 : 0.05	i : 0.05	f : 0.03	g : 0.03	a : 0.03	= : 0.03	h : 0.03	o : 0.01	! : 0.01	: : 0.01	
e : 0.18	d : 0.11	c : 0.11	3 : 0.08	g : 0.06	4 : 0.05	i : 0.05	h : 0.05	2 : 0.03	f : 0.03	] : 0.03	o : 0.03	a : 0.03	= : 0.03	D : 0.01	b : 0.01	! : 0.01	: : 0.01	

#score	813.4816891617098
#seq	59
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_CDS_m2_run2.txt

#BEAR
bb!!cccggggggg[bboooooobbggggggg22ccc	chr2:230695318-230695586(-)$1	268	22	59	12.7479
ddd[ccc[ccc[cccoooooocccccc22ccc]dddd	chr21:45478972-45479288(+)$1	316	151	188	15.0406
=====ggggggg!!aooooooa22ggggggg4444==	chr3:47040299-47040605(+)$1	306	194	231	14.8221
cc!!ffffff[eeeeeooooooeeeee333ffffff2	chr17:73222139-73222397(+)$1	258	70	107	14.4265
ggggggg!!ffffffooooooffffff333ggggggg	chr14:50906458-50906844(-)$1	386	199	236	14.4218
c####ccc[eeeeerrrrrrrrreeeeeccc333ccc	chr22:23610586-23610879(+)$1	293	74	111	12.5616
####dddd"""ddddllldddd]dddd22ccc22eee	chr22:19385372-19385622(-)$1	250	142	179	12.8203
eee[eeeee!!ddddoooooodddd333eeeee]eee	chr2:54155096-54155362(-)$1	266	219	256	15.7600
!ccc[ccc[eeeeerrrrrrrrreeeee]ccc]ccc4	chr18:13068288-13068556(+)$1	268	160	197	12.2614
e[cccggggggg[cccoooooocccggggggg22ccc	chr16:89334961-89335213(-)$1	252	7	44	15.2584
eee"""ccc"""eeeeellleeeee4444ccc22eee	chr19:13007105-13007429(+)$1	324	51	88	12.6927
!!ffffff[a!!cccooooooccc22a22ffffff22	chr1:153927387-153927655(-)$1	268	140	177	14.8113
ffffff$$$$$eeeeeooooooeeeee22ffffff22	chr2:27558773-27559039(-)$1	266	61	98	13.1945
fffff[a####ddddoooooodddd22a]ffffff::	chr17:2577469-2577829(+)$1	360	322	359	13.9816
cc!!dddd####ddddnnnnndddd4444dddd4444	chr8:120853887-120854157(-)$1	270	193	230	12.6908
"hhhhhhhh!!ddddoooooodddd]hhhhhhhheee	chr17:35512446-35512722(-)$1	276	210	247	13.4577
fffffffff!!ddddoooooodddd]ffffff]ffff	chr6:30571888-30572177(-)$1	289	18	55	14.4263
e!!eeeee"""ddddrrrrrrrrrdddd4444eeeee	chr1:198687322-198687581(+)$1	259	209	246	12.0546
ccccc[cccbb[cccooooooccc22bb]cccccc]c	chr1:11718459-11718722(+)$1	263	194	231	14.7311
e"""ddddccc[ddddllldddd]ccc]dddd22eee	chr4:24538506-24538779(-)$1	273	112	149	11.4040
#ggggggg!!eeeeeooooooeeeeeggggggg6666	chr12:46764134-46764396(-)$1	262	115	152	13.7523
ddd[ccc!!eeeeeooooooeeeeeccc]dddd22ff	chr22:50686774-50687006(-)$1	232	130	167	13.2226
cc[dddda[bb[cccoooooocccbb]a]dddd]ccc	chr9:131035880-131036163(-)$1	283	27	64	14.0035
aeeeee"""a[ddddrrrrrrrrrdddda333eeeee	chr17:25937118-25937395(+)$1	277	129	166	12.0049
###ggggggg[ddddccclllccc333dddd]ggggg	chrX:128701219-128701499(+)$1	280	165	202	11.7450
="""ccc[bbbb[cccooooooccc]bb]bb]ccc]=	chr1:109295614-109295907(+)$1	293	232	269	13.9193
Eggggggg[a[ddddoooooodddda]gggggggccc	chr3:52304576-52304842(-)$1	266	88	125	15.4055
eeeccc[cccbb!!bboooooobb22bb]ccc]ccc4	chr8:30954188-30954508(+)$1	320	225	262	12.8773
ccc!!===========nnnnn===========22ccc	chr1:12439536-12439799(+)$1	263	75	112	13.3852
eeeee"""iiiiiiiiiooooooiiiiiiiii22eee	chr17:80016123-80016412(-)$1	289	31	68	13.8408
bb!!iiiiiiiii[aooooooa]iiiiiiiii22bb]	chr10:101379697-101379937(-)$1	240	159	196	15.3883
cc!!ccc!!a[ddddoooooodddd]a22ccc22ccc	chr3:10133828-10134079(+)$1	251	33	70	18.7025
[ccc[a!!ccc[cccoooooocccccc22a]cccddd	chr12:110783083-110783399(+)$1	316	96	133	15.0657
gggggg[cccbb[cccooooooccc]bb]ccc]gggg	chr1:2341671-2341931(-)$1	260	29	66	14.5744
==!!ccc####ddddmmmmdddd]ccc]=========	chr2:201718465-201718736(-)$1	271	90	127	12.7403
deeeee!!bb[ddddoooooodddd]bb22eeeee]d	chr12:111947215-111947508(-)$1	293	198	235	14.8668
cc####bb!!ddddoooooodddd22bb]ccc22hhh	chr16:84124335-84124593(-)$1	258	92	129	14.1925
iiiiii!!bb[ddddoooooodddd]bbiiiiiiiii	chr18:21121064-21121385(-)$1	321	32	69	15.9611
deeeee!!ccceeeeeooooooeeeee22ccc22eee	chr1:43126478-43126718(+)$1	240	42	79	15.4167
bb!!bb"""a!!ddddmmmmdddd22a333bb22bb:	chr20:33203701-33203989(-)$1	288	1	38	11.3105
cc[bb[ccc!!ddddoooooodddd22ccc]bb]ccc	chr2:189452563-189452849(+)$1	286	39	76	15.1508
fffff[ggggggg[bboooooobb]ggggggg22fff	chr21:47699744-47700012(-)$1	268	46	83	13.2504
geeeee!!bb!!cccrrrrrrrrrccc333bb22eee	chr15:90129032-90129360(+)$1	328	212	249	12.8149
ffa[eeeee"""cccooooooccceeeee]a]fffff	chr10:104493223-104493547(+)$1	324	62	99	14.2440
[eeeee####eeeeeooooooeeeeeeeeeecccbb3	chr1:52551728-52551986(+)$1	258	26	63	14.2702
b"""eeeeeddddcccooooooccc>>>>>>>>>>>>	chr15:89734199-89734536(+)$1	337	175	212	12.0571
iiiiiii!!eeeeeaooooooa]eeeee]iiiiiiii	chrX:100646923-100647172(+)$1	249	89	126	15.5532
""eeeee####ddddlllddddeeeee]eeeee4444	chr19:46180836-46181085(+)$1	249	181	218	11.7566
[a[dddd[gggggggooooooggggggg]ddddaccc	chr12:120262830-120263076(-)$1	246	20	57	14.1226

#otherMatches

#Seq PSSM
CACCCCAAGCCUCUAGUUCUGUUGCAGGGGCUGUUGG	chr2:230695318-230695586(-)$1	268	22	59	12.7479
CUUUUCUUAGUGUGGCUUUCUCCAACUUCAGAUAGGC	chr21:45478972-45479288(+)$1	316	151	188	15.0406
CUGGUGCAGGAGUCCUUGGCUGUCUUUCUGUUGGAGC	chr3:47040299-47040605(+)$1	306	194	231	14.8221
CAGCCUUUGAGUUUGACAUCCAUCAAGUAAUCAAAGA	chr17:73222139-73222397(+)$1	258	70	107	14.4265
UUCUGGAUGACUAUAAUCUAAUAUAGUAACUCUGGGA	chr14:50906458-50906844(-)$1	386	199	236	14.4218
AAGUGCUGUCAGGCCAAUGCUCAGUUUGCAGAAAUCU	chr22:23610586-23610879(+)$1	293	74	111	12.5616
AGUACUGCCUGUCAGUUUCUGGAGCAGGGGUUGGGCU	chr22:19385372-19385622(-)$1	250	142	179	12.8203
uaaauguuguauaauuuaauuauuaaaGUAACAGUUG	chr2:54155096-54155362(-)$1	266	219	256	15.7600
GCUUUAAUCUGUAGCUAGAUAAACUACAAAUUUGAGA	chr18:13068288-13068556(+)$1	268	160	197	12.2614
CAGCUGGGCCUGGCCCAUACCAGGGUAGGUUCACGGC	chr16:89334961-89335213(-)$1	252	7	44	15.2584
CUCAGCCACAGGCAUGAUCAUCAUGGACGGUGUGGAG	chr19:13007105-13007429(+)$1	324	51	88	12.6927
GUGGAGUUUCUUAGGCUGCUUCCUCUGCUGACUUCUG	chr1:153927387-153927655(-)$1	268	140	177	14.8113
GGGCUGAGACAAGGGGAGCUUACCUCUGGCAGCCCUG	chr2:27558773-27559039(-)$1	266	61	98	13.1945
UUGAUACGUGAUGGGUAUUCUCCUAAAGAAUUAAAAU	chr17:2577469-2577829(+)$1	360	322	359	13.9816
GGAGCUGAAUUUGGAACCAAUUUCUUUUCUUAGACAC	chr8:120853887-120854157(-)$1	270	193	230	12.6908
aagaacauugaagaugacauaaucuagauguuuuagg	chr17:35512446-35512722(-)$1	276	210	247	13.4577
UCUAUUUUGAAUUGGAUGAAACUGAACGAGGUAAGAG	chr6:30571888-30572177(-)$1	289	18	55	14.4263
GAAGCUCUGAUGUGUAAUGGAAUCACACUUAAAGAGU	chr1:198687322-198687581(+)$1	259	209	246	12.0546
ACCACACGGCCGGACAUCGAGGUCAAGGACUGGUGAG	chr1:11718459-11718722(+)$1	263	194	231	14.7311
GUAAAUUUGAUUGGAGACACUCUUGUCUAAAUGUCAC	chr4:24538506-24538779(-)$1	273	112	149	11.4040
AGUAGUGAGUCUGCCAUGCAGGGCAGUUACUAUGGUA	chr12:46764134-46764396(-)$1	262	115	152	13.7523
CGGAGUCAGUGUGCAUGACAGUACAGACGCUGCUGGG	chr22:50686774-50687006(-)$1	232	130	167	13.2226
CUGAGGAUGUGAGUCUUGGAUGGCCAGGCUCCUGGGG	chr9:131035880-131036163(-)$1	283	27	64	14.0035
AGGCCAAGUGUGGCCAAAACAGAGGGCCCUGGUGGCC	chr17:25937118-25937395(+)$1	277	129	166	12.0049
CUUAUUUCUGACCCUCCAUAUUGGUAAGGGGCUAGGA	chrX:128701219-128701499(+)$1	280	165	202	11.7450
GUUUCUAAGGAGCUUAUUUUUUUAAAUUACUGUAGCC	chr1:109295614-109295907(+)$1	293	232	269	13.9193
UUGUUUACAGCUCUAACAAAAUAGACGGUAAGCAAGC	chr3:52304576-52304842(-)$1	266	88	125	15.4055
UAAAGUUAAACCUAUGGAUGGACACUGGAUUUCACUu	chr8:30954188-30954508(+)$1	320	225	262	12.8773
GGAAAACUGACCUGUGGGUUACAUGGGUUGGUCGUCC	chr1:12439536-12439799(+)$1	263	75	112	13.3852
AGGCUUCCCCAGUGGGGCUGCUCCCCUGCUGGCCAGC	chr17:80016123-80016412(-)$1	289	31	68	13.8408
ACCCGACCUGGGGCUGACCCGACCCCUGGGUCUUGUC	chr10:101379697-101379937(-)$1	240	159	196	15.3883
CAGAUUCAUGAAGAGAAACUCCUCUACUGGAACAUGG	chr3:10133828-10134079(+)$1	251	33	70	18.7025
CUCAACAGGUUAGUGCACCUUCACGGCAGGCUGAGGC	chr12:110783083-110783399(+)$1	316	96	133	15.0657
UUCUCCUCUCAGGUGCGAGGAAGUGGCUGGAGUGGAG	chr1:2341671-2341931(-)$1	260	29	66	14.5744
AGACGCUGUAAACCUCUGAAGGUAAGCCUUUGAGACA	chr2:201718465-201718736(-)$1	271	90	127	12.7403
AGCAUUACUAAAGAUUUAUCUAUUUAUAAAAAUGCGU	chr12:111947215-111947508(-)$1	293	198	235	14.8668
GCAAUGACGGACCUCUUUAUGGGUAAGUAGCCCCAGC	chr16:84124335-84124593(-)$1	258	92	129	14.1925
GCGGGAUUGGCAGUCUUCAUUGACUUUCUUCUGCAGA	chr18:21121064-21121385(-)$1	321	32	69	15.9611
UCUCUGUUUCAGGGUCAUAAAGGAUUUCAUGAUUCAG	chr1:43126478-43126718(+)$1	240	42	79	15.4167
GAUUGAUGAGGCUGGAUUAUUCCAUACAUUUCUUUCU	chr20:33203701-33203989(-)$1	288	1	38	11.3105
AACCUUUUGACCCAUUUAACUGUGGAGCAGCAGAUUU	chr2:189452563-189452849(+)$1	286	39	76	15.1508
GCACUCUCCUCUUGGCAAGGCCGCAGGGAGGACUGGU	chr21:47699744-47700012(-)$1	268	46	83	13.2504
ACUGUGCAGUUAGUAGAACCCCAAUAUGUUAUAACAC	chr15:90129032-90129360(+)$1	328	212	249	12.8149
CUGUCUUUUAUUUGUUUUUAUACAGAAAGUCAAGGUC	chr10:104493223-104493547(+)$1	324	62	99	14.2440
UGACUAAUAUUAAAAUAAACUUUUUGUAGUCUUGGAC	chr1:52551728-52551986(+)$1	258	26	63	14.2702
CACAGGGUGAGUGGCCAUCACGGGCUCAGAAUCAGCA	chr15:89734199-89734536(+)$1	337	175	212	12.0571
AUUUUUUAUCCUUUCCCUUCUGAAGAGGCAAAAAAUU	chrX:100646923-100647172(+)$1	249	89	126	15.5532
CCAUCCUCAUGACCAUCUUGGUAGGAUCGGUCCCGCC	chr19:46180836-46181085(+)$1	249	181	218	11.7566
CGUGAUUGCCUAUGAGAUGAUUUAUGGGAGAUCCCCC	chr12:120262830-120263076(-)$1	246	20	57	14.1226

#DB
((..((((((((((.((......)))))))))..)))	chr2:230695318-230695586(-)$1	1	22	59	12.7479
(((.(((.(((.(((......))))))..))).))))	chr21:45478972-45479288(+)$1	1	151	188	15.0406
((((((((((((..(......)..)))))))....))	chr3:47040299-47040605(+)$1	1	194	231	14.8221
((..((((((.(((((......)))))...)))))).	chr17:73222139-73222397(+)$1	1	70	107	14.4265
(((((((..((((((......))))))...)))))))	chr14:50906458-50906844(-)$1	1	199	236	14.4218
(....(((.(((((.........))))))))...)))	chr22:23610586-23610879(+)$1	1	74	111	12.5616
....((((...((((...)))).))))..)))..)))	chr22:19385372-19385622(-)$1	1	142	179	12.8203
(((.(((((..((((......))))...))))).)))	chr2:54155096-54155362(-)$1	1	219	256	15.7600
.(((.(((.(((((.........))))).))).))).	chr18:13068288-13068556(+)$1	1	160	197	12.2614
(.((((((((((.(((......))))))))))..)))	chr16:89334961-89335213(-)$1	1	7	44	15.2584
(((...(((...(((((...)))))....)))..)))	chr19:13007105-13007429(+)$1	1	51	88	12.6927
..((((((.(..(((......)))..)..))))))..	chr1:153927387-153927655(-)$1	1	140	177	14.8113
((((((.....(((((......)))))..))))))..	chr2:27558773-27559039(-)$1	1	61	98	13.1945
(((((.(....((((......))))..).))))))..	chr17:2577469-2577829(+)$1	1	322	359	13.9816
((..((((....((((.....))))....))))....	chr8:120853887-120854157(-)$1	1	193	230	12.6908
.((((((((..((((......)))).)))))))))))	chr17:35512446-35512722(-)$1	1	210	247	13.4577
(((((((((..((((......)))).)))))).))))	chr6:30571888-30572177(-)$1	1	18	55	14.4263
(..(((((...((((.........))))....)))))	chr1:198687322-198687581(+)$1	1	209	246	12.0546
(((((.(((((.(((......)))..)).)))))).)	chr1:11718459-11718722(+)$1	1	194	231	14.7311
(...(((((((.((((...)))).))).))))..)))	chr4:24538506-24538779(-)$1	1	112	149	11.4040
.(((((((..(((((......))))))))))))....	chr12:46764134-46764396(-)$1	1	115	152	13.7523
(((.(((..(((((......)))))))).))))..))	chr22:50686774-50687006(-)$1	1	130	167	13.2226
((.(((((.((.(((......))))).).)))).)))	chr9:131035880-131036163(-)$1	1	27	64	14.0035
((((((...(.((((.........)))))...)))))	chr17:25937118-25937395(+)$1	1	129	166	12.0049
...(((((((.(((((((...)))...)))).)))))	chrX:128701219-128701499(+)$1	1	165	202	11.7450
(...(((.((((.(((......))).)).)).))).)	chr1:109295614-109295907(+)$1	1	232	269	13.9193
((((((((.(.((((......))))).)))))))(((	chr3:52304576-52304842(-)$1	1	88	125	15.4055
((((((.(((((..((......))..)).))).))).	chr8:30954188-30954508(+)$1	1	225	262	12.8773
(((..(((((((((((.....)))))))))))..)))	chr1:12439536-12439799(+)$1	1	75	112	13.3852
(((((...(((((((((......)))))))))..)))	chr17:80016123-80016412(-)$1	1	31	68	13.8408
((..(((((((((.(......).)))))))))..)).	chr10:101379697-101379937(-)$1	1	159	196	15.3883
((..(((..(.((((......)))).)..)))..)))	chr3:10133828-10134079(+)$1	1	33	70	18.7025
.(((.(..(((.(((......))))))..).))))))	chr12:110783083-110783399(+)$1	1	96	133	15.0657
((((((.(((((.(((......))).)).))).))))	chr1:2341671-2341931(-)$1	1	29	66	14.5744
((..(((....((((....)))).))).)))))))))	chr2:201718465-201718736(-)$1	1	90	127	12.7403
((((((..((.((((......)))).))..))))).)	chr12:111947215-111947508(-)$1	1	198	235	14.8668
((....((..((((......))))..)).)))..)))	chr16:84124335-84124593(-)$1	1	92	129	14.1925
((((((..((.((((......)))).)))))))))))	chr18:21121064-21121385(-)$1	1	32	69	15.9611
)(((((..((((((((......)))))..)))..)))	chr1:43126478-43126718(+)$1	1	42	79	15.4167
((..((...(..((((....))))..)...))..)).	chr20:33203701-33203989(-)$1	1	1	38	11.3105
((.((.(((..((((......))))..))).)).)))	chr2:189452563-189452849(+)$1	1	39	76	15.1508
(((((.(((((((.((......)).)))))))..)))	chr21:47699744-47700012(-)$1	1	46	83	13.2504
((((((..((..(((.........)))...))..)))	chr15:90129032-90129360(+)$1	1	212	249	12.8149
(((.(((((...(((......)))))))).).)))))	chr10:104493223-104493547(+)$1	1	62	99	14.2440
.(((((....(((((......))))))))))))))).	chr1:52551728-52551986(+)$1	1	26	63	14.2702
(...((((((((((((......)))............	chr15:89734199-89734536(+)$1	1	175	212	12.0571
(((((((..((((((......).))))).))))))))	chrX:100646923-100647172(+)$1	1	89	126	15.5532
..(((((....((((...))))))))).)))))....	chr19:46180836-46181085(+)$1	1	181	218	11.7566
.(.((((.(((((((......))))))).))))))))	chr12:120262830-120263076(-)$1	1	20	57	14.1226

#PSSM
c : 0.18	e : 0.14	f : 0.10	b : 0.08	d : 0.08	= : 0.06	g : 0.06	# : 0.06	[ : 0.06	! : 0.04	" : 0.04	i : 0.04	a : 0.02	E : 0.02	
c : 0.20	e : 0.18	f : 0.10	g : 0.08	" : 0.08	b : 0.06	# : 0.06	d : 0.04	= : 0.04	! : 0.04	i : 0.04	[ : 0.02	h : 0.02	a : 0.02	
e : 0.20	! : 0.16	c : 0.10	f : 0.10	g : 0.08	# : 0.08	" : 0.06	[ : 0.06	d : 0.04	i : 0.04	= : 0.02	h : 0.02	a : 0.02	
! : 0.16	e : 0.16	g : 0.10	c : 0.10	f : 0.10	[ : 0.08	" : 0.08	# : 0.06	d : 0.04	i : 0.04	= : 0.02	h : 0.02	b : 0.02	
e : 0.22	c : 0.18	f : 0.12	g : 0.10	d : 0.10	i : 0.06	# : 0.04	[ : 0.04	b : 0.04	= : 0.02	" : 0.02	h : 0.02	! : 0.02	
e : 0.20	c : 0.18	g : 0.14	d : 0.10	f : 0.08	[ : 0.08	i : 0.06	" : 0.04	h : 0.02	= : 0.02	a : 0.02	# : 0.02	b : 0.02	
c : 0.22	g : 0.14	d : 0.10	e : 0.10	! : 0.10	f : 0.06	" : 0.06	[ : 0.04	i : 0.04	$ : 0.02	a : 0.02	h : 0.02	= : 0.02	b : 0.02	# : 0.02	
! : 0.18	g : 0.14	c : 0.14	e : 0.08	# : 0.08	[ : 0.06	f : 0.06	d : 0.06	" : 0.06	$ : 0.02	h : 0.02	a : 0.02	= : 0.02	i : 0.02	b : 0.02	
c : 0.18	g : 0.12	! : 0.12	[ : 0.10	# : 0.10	" : 0.08	b : 0.08	e : 0.06	f : 0.04	i : 0.04	$ : 0.02	h : 0.02	= : 0.02	
g : 0.12	c : 0.12	! : 0.12	b : 0.12	a : 0.10	# : 0.10	e : 0.08	" : 0.08	f : 0.04	i : 0.04	$ : 0.02	= : 0.02	d : 0.02	
[ : 0.14	! : 0.14	e : 0.12	g : 0.10	b : 0.10	c : 0.08	" : 0.08	# : 0.08	i : 0.04	d : 0.04	f : 0.02	$ : 0.02	= : 0.02	
d : 0.34	e : 0.18	g : 0.10	[ : 0.10	! : 0.06	b : 0.06	" : 0.04	i : 0.04	f : 0.02	# : 0.02	= : 0.02	
d : 0.40	e : 0.20	c : 0.14	g : 0.06	[ : 0.06	! : 0.04	i : 0.04	f : 0.02	= : 0.02	
d : 0.38	c : 0.22	e : 0.20	g : 0.04	! : 0.04	[ : 0.04	f : 0.02	= : 0.02	i : 0.02	
d : 0.36	c : 0.22	e : 0.12	a : 0.06	r : 0.04	o : 0.04	b : 0.04	[ : 0.02	f : 0.02	= : 0.02	i : 0.02	g : 0.02	
o : 0.48	r : 0.10	c : 0.10	e : 0.08	b : 0.06	d : 0.06	l : 0.04	= : 0.02	i : 0.02	m : 0.02	
o : 0.67	r : 0.10	l : 0.06	n : 0.04	m : 0.04	b : 0.02	e : 0.02	c : 0.02	i : 0.02	
o : 0.71	r : 0.10	l : 0.08	n : 0.04	m : 0.04	c : 0.02	
o : 0.71	r : 0.10	l : 0.06	d : 0.04	n : 0.04	m : 0.04	
o : 0.71	r : 0.10	d : 0.08	l : 0.04	n : 0.04	m : 0.02	
o : 0.67	d : 0.12	r : 0.10	e : 0.04	n : 0.04	l : 0.02	
d : 0.32	o : 0.22	c : 0.14	r : 0.10	e : 0.08	a : 0.06	f : 0.02	= : 0.02	g : 0.02	
d : 0.28	c : 0.22	e : 0.16	r : 0.10	] : 0.06	o : 0.04	b : 0.04	2 : 0.02	f : 0.02	= : 0.02	g : 0.02	
d : 0.26	c : 0.22	e : 0.22	b : 0.06	r : 0.06	] : 0.04	i : 0.04	2 : 0.02	f : 0.02	= : 0.02	g : 0.02	
d : 0.26	e : 0.24	c : 0.18	2 : 0.10	b : 0.04	g : 0.04	i : 0.04	f : 0.02	3 : 0.02	= : 0.02	] : 0.02	
e : 0.20	2 : 0.14	] : 0.14	c : 0.12	g : 0.10	d : 0.06	3 : 0.04	4 : 0.04	i : 0.04	f : 0.02	b : 0.02	a : 0.02	= : 0.02	> : 0.02	
e : 0.18	b : 0.14	g : 0.12	c : 0.12	d : 0.06	a : 0.06	f : 0.04	3 : 0.04	4 : 0.04	2 : 0.04	] : 0.04	i : 0.04	h : 0.02	= : 0.02	> : 0.02	
g : 0.14	2 : 0.14	b : 0.14	3 : 0.10	e : 0.10	d : 0.06	] : 0.06	4 : 0.04	a : 0.04	c : 0.04	i : 0.04	h : 0.02	f : 0.02	= : 0.02	> : 0.02	
] : 0.22	2 : 0.16	g : 0.12	3 : 0.08	e : 0.08	4 : 0.06	i : 0.06	c : 0.04	d : 0.04	= : 0.04	h : 0.02	f : 0.02	a : 0.02	> : 0.02	
c : 0.24	g : 0.12	d : 0.12	3 : 0.10	f : 0.08	i : 0.08	e : 0.06	= : 0.04	h : 0.02	4 : 0.02	b : 0.02	a : 0.02	2 : 0.02	] : 0.02	> : 0.02	
c : 0.22	g : 0.14	d : 0.12	f : 0.10	e : 0.08	i : 0.08	b : 0.06	= : 0.04	] : 0.04	h : 0.02	4 : 0.02	3 : 0.02	a : 0.02	> : 0.02	
c : 0.24	g : 0.12	f : 0.10	d : 0.10	i : 0.08	e : 0.06	] : 0.06	b : 0.06	4 : 0.04	3 : 0.04	= : 0.04	h : 0.02	> : 0.02	
2 : 0.28	] : 0.10	f : 0.10	e : 0.10	g : 0.08	d : 0.08	c : 0.08	i : 0.04	4 : 0.02	3 : 0.02	h : 0.02	= : 0.02	b : 0.02	> : 0.02	
2 : 0.30	f : 0.12	c : 0.12	g : 0.08	4 : 0.06	] : 0.06	e : 0.06	i : 0.04	d : 0.02	3 : 0.02	h : 0.02	6 : 0.02	= : 0.02	> : 0.02	a : 0.02	
c : 0.26	e : 0.22	f : 0.14	4 : 0.06	g : 0.06	b : 0.06	d : 0.04	i : 0.04	6 : 0.02	2 : 0.02	= : 0.02	h : 0.02	> : 0.02	
c : 0.22	e : 0.20	f : 0.10	g : 0.06	] : 0.06	b : 0.06	d : 0.04	= : 0.04	2 : 0.04	4 : 0.04	i : 0.04	: : 0.02	6 : 0.02	h : 0.02	> : 0.02	
c : 0.20	e : 0.20	4 : 0.08	f : 0.08	d : 0.06	= : 0.06	2 : 0.06	g : 0.06	: : 0.04	i : 0.04	6 : 0.02	] : 0.02	h : 0.02	3 : 0.02	> : 0.02	

#score	679.1626895123306
#seq	49
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_transcript_m3_run2.txt

#BEAR
=[eeeeevvvvvvvvvvvvveeeee=	chr2:208435875-208436137(+)$1	262	204	230	21.0346
::ddddwwwwwwwwwwwwwwdddd:f	chr1:153923093-153923341(-)$1	248	102	128	18.6911
dddd^^^^^^^^^^^^^^^^^^^^^^	chr10:134177763-134178016(+)$1	253	103	129	21.0230
gggggg^^^^^^^^^^^^^^^^^^^^	chr6:170167817-170168100(+)$1	283	69	95	21.4020
ffffff^^^^^^^^^^^^^^^^^^^^	chr19:4036835-4037091(+)$1	256	16	42	21.3283
fff[eeeeettttttttttteeeeef	chr11:2153624-2153830(-)$1	206	140	166	17.1614
fff[eeeeettttttttttteeeeef	chr11:2153572-2153779(-)$1	207	89	115	17.1614
ffffff^^^^^^^^^^^^^^^^^^^^	chr2:178215832-178216111(-)$1	279	206	232	21.3283
dddeeeeeuuuuuuuuuuuueeeee>	chr2:11705309-11705587(+)$1	278	13	39	20.3872
gggeeeeeuuuuuuuuuuuueeeee4	chr17:75467003-75467221(+)$1	218	131	157	20.8544
ff[ccc^^^^^^^^^^^^^^^^^^^^	chr11:2153456-2153662(-)$1	206	133	159	21.4213
eeeee^^^^^^^^^^^^^^^^^^^^^	chrX:3740580-3740814(-)$1	234	18	44	21.4644
[ddddxxxxxxxxxxxxxxxdddd]c	chr4:3231176-3231490(+)$1	314	26	52	19.3983
!!dddd^^^^^^^^^^^^^^^^^^^^	chr10:134178165-134178431(+)$1	266	58	84	21.3831
ffffff^^^^^^^^^^^^^^^^^^^^	chr10:80830348-80830613(+)$1	265	6	32	21.3283
[ffffffuuuuuuuuuuuuffffffb	chr11:66630893-66631148(-)$1	255	62	88	18.9619
ffffffwwwwwwwwwwwwwwffffff	chr14:95724150-95724400(-)$1	250	128	154	21.0216
:::eeeeeuuuuuuuuuuuueeeee:	chr11:2153406-2153610(-)$1	204	157	183	17.1879
##ddddvvvvvvvvvvvvvdddd333	chr19:11342537-11342754(-)$1	217	160	186	20.1277
ffffff^^^^^^^^^^^^^^^^^^^^	chr7:696244-696519(-)$1	275	48	74	21.3283
d[ddddyyyyyyyyyyyyyyyydddd	chr17:28784338-28784597(+)$1	259	66	92	20.4677
:::eeeeeuuuuuuuuuuuueeeee:	chr11:2153272-2153479(-)$1	207	26	52	17.1879
!ddddxxxxxxxxxxxxxxxdddd]e	chr9:136718993-136719224(-)$1	231	160	186	19.1987
ffff[cccuuuuuuuuuuuuccc]ff	chr17:19212941-19213233(+)$1	292	68	94	20.0928
^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2152422-2152626(-)$1	204	42	68	20.5095
ddd!!axxxxxxxxxxxxxxxa22dd	chr1:54684934-54685193(+)$1	259	155	181	18.9408
ffffffwwwwwwwwwwwwwwffffff	chr10:113969604-113969842(-)$1	238	86	112	21.0216
:::eeeeeuuuuuuuuuuuueeeee:	chr11:2153401-2153606(-)$1	205	153	179	17.1879
gddddcccuuuuuuuuuuuuccc]dd	chr21:44083629-44083959(+)$1	330	200	226	19.8414
ff[ccc^^^^^^^^^^^^^^^^^^^^	chr11:2153477-2153681(-)$1	204	152	178	21.4213
gggggggvvvvvvvvvvvvvgggggg	chr17:7371149-7371437(-)$1	288	256	282	20.1487
[ccc[ddddtttttttttttdddd]c	chr14:70124857-70125118(+)$1	261	100	126	16.5657
eeeeexxxxxxxxxxxxxxxeeeee:	chr11:2152718-2152924(-)$1	206	72	98	19.1501
ffffffvvvvvvvvvvvvvffffff:	chr4:7615936-7616196(+)$1	260	132	158	18.8203
======xxxxxxxxxxxxxxx=====	chr21:46904216-46904499(+)$1	283	214	240	19.7034
ggggggwwwwwwwwwwwwwwgggggg	chr22:47400479-47400859(+)$1	380	243	269	21.3372
[ccc[cccuuuuuuuuuuuuccc]cc	chr1:54684623-54684913(+)$1	290	207	233	20.3537
[cccdddduuuuuuuuuuuudddd22	chr3:197297546-197297825(-)$1	279	225	251	19.6872
"""cccvvvvvvvvvvvvvccc333d	chr1:17950518-17950809(+)$1	291	42	68	20.1403
c!!ccc^^^^^^^^^^^^^^^^^^^^	chr9:80934802-80935181(+)$1	379	18	44	21.3890
b[ddddwwwwwwwwwwwwwwddddbb	chr7:157632919-157633226(-)$1	307	259	285	20.8583
fbb[eeeeettttttttttteeeeeb	chr7:158217753-158218000(-)$1	247	113	139	16.7267
[dddd[auuuuuuuuuuuua]dddd]	chr20:31042830-31043040(-)$1	210	63	89	20.2691
eeeeexxxxxxxxxxxxxxxeeeeed	chr8:103666994-103667246(-)$1	252	58	84	19.5326
ggggggguuuuuuuuuuuuggggggg	chr6:2377631-2377878(+)$1	247	154	180	19.1042
ffffff^^^^^^^^^^^^^^^^^^^^	chr16:16266203-16266490(-)$1	287	6	32	21.3283
ffffffxxxxxxxxxxxxxxxfffff	chr3:50098644-50098920(+)$1	276	13	39	19.1974
ccbb[awwwwwwwwwwwwwwa]bb]c	chr9:97845626-97845873(+)$1	247	33	59	20.7462
^^^^^^^^^^^^^^^^^^^^ccc444	chr13:114477915-114478168(+)$1	253	69	95	19.1324
dddd^^^^^^^^^^^^^^^^^^^^^^	chr7:158234538-158234796(-)$1	258	101	127	21.0230
::ddddwwwwwwwwwwwwwwdddd::	chr22:48980049-48980319(+)$1	270	130	156	18.2505
f!!ddddvvvvvvvvvvvvvdddd]f	chr9:137021901-137022207(+)$1	306	21	47	20.3348
ggggggguuuuuuuuuuuuggggggg	chr18:56180475-56180720(-)$1	245	35	61	19.1042
ffffff^^^^^^^^^^^^^^^^^^^^	chr12:133095259-133095558(+)$1	299	170	196	21.3283
dddd^^^^^^^^^^^^^^^^^^^^^^	chr7:158234238-158234550(-)$1	312	56	82	21.0230
ee[ccc^^^^^^^^^^^^^^^^^^^^	chr19:33949114-33949420(-)$1	306	92	118	21.3181
ddd[bb^^^^^^^^^^^^^^^^^^^^	chr16:81611741-81612005(+)$1	264	55	81	20.6563
eeeee^^^^^^^^^^^^^^^^^^^^^	chr3:126258648-126258906(+)$1	258	149	175	21.4644
gggggg^^^^^^^^^^^^^^^^^^^^	chr19:56670638-56670902(+)$1	264	217	243	21.4020
gggggggvvvvvvvvvvvvvgggggg	chr19:2188466-2188726(+)$1	260	203	229	20.1487
========uuuuuuuuuuuu======	chr11:2152337-2152542(-)$1	205	106	132	19.8910
ddd[bb^^^^^^^^^^^^^^^^^^^^	chr6:167237908-167238197(-)$1	289	110	136	20.6563
hccc[bbuuuuuuuuuuuubb]ccc:	chrX:152956292-152956527(+)$1	235	24	50	18.1512
eeeeexxxxxxxxxxxxxxxeeeeef	chr6:170167580-170167853(+)$1	273	139	165	19.5907
eeeee^^^^^^^^^^^^^^^^^^^^^	chrX:3740667-3740926(-)$1	259	130	156	21.4644
ffddddwwwwwwwwwwwwwwdddd33	chr11:2153236-2153438(-)$1	202	21	47	21.9049
ffffffvvvvvvvvvvvvvffffff:	chr4:3230920-3231290(+)$1	370	81	107	18.8203
[bb[dddduuuuuuuuuuuudddd22	chr9:123292187-123292441(-)$1	254	150	176	19.2856
:::eeeeeuuuuuuuuuuuueeeee:	chr3:24536346-24536604(-)$1	258	144	170	17.1879
eeeeexxxxxxxxxxxxxxxeeeee]	chr9:97845740-97846092(+)$1	352	212	238	19.7698
eeeeeeeeettttttttttteeeee]	chr4:17805911-17806195(-)$1	284	165	191	17.2515

#otherMatches

#Seq PSSM
AUGCAUGAAAGUUUGACCCCCAUGUU	chr2:208435875-208436137(+)$1	262	204	230	21.0346
UCGUAGAAUCAGUCAAUUUCCUACUG	chr1:153923093-153923341(-)$1	248	102	128	18.6911
GCGCUUACACCcacccacacuuacac	chr10:134177763-134178016(+)$1	253	103	129	21.0230
gcauauaaacacacaaauguacacac	chr6:170167817-170168100(+)$1	283	69	95	21.4020
gcaugccacacauccauacaGUCCAC	chr19:4036835-4037091(+)$1	256	16	42	21.3283
CUUUGAGUCAAAUUGGCCUGGACUUG	chr11:2153624-2153830(-)$1	206	140	166	17.1614
CUUUGAGUCAAAUUGGCCUGGACUUG	chr11:2153572-2153779(-)$1	207	89	115	17.1614
CAGCUGAUCUUGUCAAACACACACAC	chr2:178215832-178216111(-)$1	279	206	232	21.3283
aguuucccuaucuucaaaaugggaac	chr2:11705309-11705587(+)$1	278	13	39	20.3872
GGAAGAGAAAACAAUUCCAGUCUCUC	chr17:75467003-75467221(+)$1	218	131	157	20.8544
CUCCUCACUCCCUUUUCCAUCACUAA	chr11:2153456-2153662(-)$1	206	133	159	21.4213
ugugcucacacacauacacacucaca	chrX:3740580-3740814(-)$1	234	18	44	21.4644
auggcacacacuacacacacgccacg	chr4:3231176-3231490(+)$1	314	26	52	19.3983
ccgcguccacacuuacaucuaccucc	chr10:134178165-134178431(+)$1	266	58	84	21.3831
ACCUGCAGCAAACUUUUUCCUUCUCU	chr10:80830348-80830613(+)$1	265	6	32	21.3283
CAGACUCCAGCUGUUUUCAGAGUCUG	chr11:66630893-66631148(-)$1	255	62	88	18.9619
GUCCAGUUCUCUCUUAUUGUCUGGAC	chr14:95724150-95724400(-)$1	250	128	154	21.0216
AGAGCAUGAAAACCAAAAUCCAUGCA	chr11:2153406-2153610(-)$1	204	157	183	17.1879
UCCAGUCACCCAUAACCUCACUGCCC	chr19:11342537-11342754(-)$1	217	160	186	20.1277
augcauccacucauucauucaucuau	chr7:696244-696519(-)$1	275	48	74	21.3283
uuuggcuguugcaaaugauguugcca	chr17:28784338-28784597(+)$1	259	66	92	20.4677
AGAGCAUGAAAACCAAAAUCCAUGCA	chr11:2153272-2153479(-)$1	207	26	52	17.1879
ucuguaucccaguaucucccacaGUU	chr9:136718993-136719224(-)$1	231	160	186	19.1987
UUGACUGUCACUUGAUUUUAACAUUC	chr17:19212941-19213233(+)$1	292	68	94	20.0928
AAGUCCCGCUAAGAUUCUCCAAUGUU	chr11:2152422-2152626(-)$1	204	42	68	20.5095
UUGAGGGAUUAGCAGGAAAAGCAGCA	chr1:54684934-54685193(+)$1	259	155	181	18.9408
GACAGGAGCCCUUUCCCUACCCUGUC	chr10:113969604-113969842(-)$1	238	86	112	21.0216
AGAGCAUGAAAACCAAAAUCCAUGCA	chr11:2153401-2153606(-)$1	205	153	179	17.1879
CCAGCCUGCCCCAUGUCCCUCAGCGC	chr21:44083629-44083959(+)$1	330	200	226	19.8414
CUCCUCACUCCCUUUUCCAUCACUAA	chr11:2153477-2153681(-)$1	204	152	178	21.4213
CCUUCUAAGAUUUAUGGGGCUGGAAG	chr17:7371149-7371437(-)$1	288	256	282	20.1487
GAGCUGGGCAGUUUCUGAAAGCCCUG	chr14:70124857-70125118(+)$1	261	100	126	16.5657
caugcacacacagcacacacgcaugc	chr11:2152718-2152924(-)$1	206	72	98	19.1501
guucauccauccauccaccaugaauc	chr4:7615936-7616196(+)$1	260	132	158	18.8203
AUGUGCACAUACACAUAGCCAGCACA	chr21:46904216-46904499(+)$1	283	214	240	19.7034
guauagauacacccacacuacuguac	chr22:47400479-47400859(+)$1	380	243	269	21.3372
agggaguugagccuucuacaaacacc	chr1:54684623-54684913(+)$1	290	207	233	20.3537
guuauuuccauaccuccucugaaauc	chr3:197297546-197297825(-)$1	279	225	251	19.6872
UUCUCCUCCCUCCACCUGUGGGCUUG	chr1:17950518-17950809(+)$1	291	42	68	20.1403
GUUUAGuccaccuauuuauucauuca	chr9:80934802-80935181(+)$1	379	18	44	21.3890
cacgcggccacacagucacacgcggu	chr7:157632919-157633226(-)$1	307	259	285	20.8583
GCGCAGGCCUCAGCUAGACUGGUCUC	chr7:158217753-158218000(-)$1	247	113	139	16.7267
AGAGCAGGAACGCCACCAGCAGCUCC	chr20:31042830-31043040(-)$1	210	63	89	20.2691
GCGGGGGGAUGACACGAGGGCCCGCC	chr8:103666994-103667246(-)$1	252	58	84	19.5326
auccaugaauucaacuaaccauggau	chr6:2377631-2377878(+)$1	247	154	180	19.1042
GUAUCUCCACCCACCUACUUACCCAU	chr16:16266203-16266490(-)$1	287	6	32	21.3283
AGUAACCUUUGUUUUAUUUCUGUUGC	chr3:50098644-50098920(+)$1	276	13	39	19.1974
cggcacacacagcacacacagcgcac	chr9:97845626-97845873(+)$1	247	33	59	20.7462
uacacaacacacaccacacaugacac	chr13:114477915-114478168(+)$1	253	69	95	19.1324
caugaccaucacuaucaccaccacca	chr7:158234538-158234796(-)$1	258	101	127	21.0230
caguacacaccacacgcacaguacac	chr22:48980049-48980319(+)$1	270	130	156	18.2505
CUUGAACCCUGUUUCUCCCUGUUCUG	chr9:137021901-137022207(+)$1	306	21	47	20.3348
AGAUAGGUUAGGACAUUUUUCUAUCU	chr18:56180475-56180720(-)$1	245	35	61	19.1042
augcauccaucauccacccaucuguc	chr12:133095259-133095558(+)$1	299	170	196	21.3283
caugaccaucacuaucaccaucacca	chr7:158234238-158234550(-)$1	312	56	82	21.0230
gacacgccauacacaccacacacacc	chr19:33949114-33949420(-)$1	306	92	118	21.3181
ugucaccaucaccaucaucaccacca	chr16:81611741-81612005(+)$1	264	55	81	20.6563
caugccacacacacacaaaugccaca	chr3:126258648-126258906(+)$1	258	149	175	21.4644
gaagcccacagcccagcccucUUCCC	chr19:56670638-56670902(+)$1	264	217	243	21.4020
GGACAGGUACGCCUCCUCCUCCUGUC	chr19:2188466-2188726(+)$1	260	203	229	20.1487
AUACACCCGUAGGGUGGGCGGGGUGU	chr11:2152337-2152542(-)$1	205	106	132	19.8910
augcagacacacacacacagacacag	chr6:167237908-167238197(-)$1	289	110	136	20.6563
UGUCUCCAACACUACCUCAGGCGACU	chrX:152956292-152956527(+)$1	235	24	50	18.1512
augccacacagacacacacaggcaua	chr6:170167580-170167853(+)$1	273	139	165	19.5907
ugugcucacacacauacacacucaca	chrX:3740667-3740926(-)$1	259	130	156	21.4644
AAUUGGCACGACCCUCACCCCCAAAU	chr11:2153236-2153438(-)$1	202	21	47	21.9049
caugcacacacacuccacaugcaugc	chr4:3230920-3231290(+)$1	370	81	107	18.8203
GCUGCUCCAAGGGAAGAAAAGGAGAG	chr9:123292187-123292441(-)$1	254	150	176	19.2856
AAGGAGUUGACAUUUUGCAGGACUCG	chr3:24536346-24536604(-)$1	258	144	170	17.1879
ugcggcacacacagcacaCACCGCAC	chr9:97845740-97846092(+)$1	352	212	238	19.7698
AGUGGUAAGUGACUAAUACUUUUACA	chr4:17805911-17806195(-)$1	284	165	191	17.2515

#DB
(.(((((.............))))))	chr2:208435875-208436137(+)$1	1	204	230	21.0346
..((((..............)))).(	chr1:153923093-153923341(-)$1	1	102	128	18.6911
((((......................	chr10:134177763-134178016(+)$1	1	103	129	21.0230
((((((....................	chr6:170167817-170168100(+)$1	1	69	95	21.4020
((((((....................	chr19:4036835-4037091(+)$1	1	16	42	21.3283
(((.(((((...........))))))	chr11:2153624-2153830(-)$1	1	140	166	17.1614
(((.(((((...........))))))	chr11:2153572-2153779(-)$1	1	89	115	17.1614
((((((....................	chr2:178215832-178216111(-)$1	1	206	232	21.3283
((((((((............))))).	chr2:11705309-11705587(+)$1	1	13	39	20.3872
((((((((............))))).	chr17:75467003-75467221(+)$1	1	131	157	20.8544
((.(((....................	chr11:2153456-2153662(-)$1	1	133	159	21.4213
(((((.....................	chrX:3740580-3740814(-)$1	1	18	44	21.4644
.((((...............)))).)	chr4:3231176-3231490(+)$1	1	26	52	19.3983
..((((....................	chr10:134178165-134178431(+)$1	1	58	84	21.3831
((((((....................	chr10:80830348-80830613(+)$1	1	6	32	21.3283
.((((((............)))))))	chr11:66630893-66631148(-)$1	1	62	88	18.9619
((((((..............))))))	chr14:95724150-95724400(-)$1	1	128	154	21.0216
...(((((............))))).	chr11:2153406-2153610(-)$1	1	157	183	17.1879
..((((.............))))...	chr19:11342537-11342754(-)$1	1	160	186	20.1277
((((((....................	chr7:696244-696519(-)$1	1	48	74	21.3283
(.((((................))))	chr17:28784338-28784597(+)$1	1	66	92	20.4677
...(((((............))))).	chr11:2153272-2153479(-)$1	1	26	52	17.1879
.((((...............)))).)	chr9:136718993-136719224(-)$1	1	160	186	19.1987
((((.(((............))).))	chr17:19212941-19213233(+)$1	1	68	94	20.0928
..........................	chr11:2152422-2152626(-)$1	1	42	68	20.5095
(((..(...............)..))	chr1:54684934-54685193(+)$1	1	155	181	18.9408
((((((..............))))))	chr10:113969604-113969842(-)$1	1	86	112	21.0216
...(((((............))))).	chr11:2153401-2153606(-)$1	1	153	179	17.1879
((((((((............))).))	chr21:44083629-44083959(+)$1	1	200	226	19.8414
((.(((....................	chr11:2153477-2153681(-)$1	1	152	178	21.4213
(((((((.............))))))	chr17:7371149-7371437(-)$1	1	256	282	20.1487
.(((.((((...........)))).)	chr14:70124857-70125118(+)$1	1	100	126	16.5657
(((((...............))))).	chr11:2152718-2152924(-)$1	1	72	98	19.1501
((((((.............)))))).	chr4:7615936-7616196(+)$1	1	132	158	18.8203
((((((...............)))))	chr21:46904216-46904499(+)$1	1	214	240	19.7034
((((((..............))))))	chr22:47400479-47400859(+)$1	1	243	269	21.3372
.(((.(((............))).))	chr1:54684623-54684913(+)$1	1	207	233	20.3537
.(((((((............))))..	chr3:197297546-197297825(-)$1	1	225	251	19.6872
...(((.............)))...)	chr1:17950518-17950809(+)$1	1	42	68	20.1403
(..(((....................	chr9:80934802-80935181(+)$1	1	18	44	21.3890
(.((((..............))))))	chr7:157632919-157633226(-)$1	1	259	285	20.8583
)((.(((((...........))))))	chr7:158217753-158218000(-)$1	1	113	139	16.7267
.((((.(............).)))).	chr20:31042830-31043040(-)$1	1	63	89	20.2691
(((((...............))))))	chr8:103666994-103667246(-)$1	1	58	84	19.5326
(((((((............)))))))	chr6:2377631-2377878(+)$1	1	154	180	19.1042
((((((....................	chr16:16266203-16266490(-)$1	1	6	32	21.3283
((((((...............)))))	chr3:50098644-50098920(+)$1	1	13	39	19.1974
((((.(..............).)).)	chr9:97845626-97845873(+)$1	1	33	59	20.7462
....................)))...	chr13:114477915-114478168(+)$1	1	69	95	19.1324
((((......................	chr7:158234538-158234796(-)$1	1	101	127	21.0230
..((((..............))))..	chr22:48980049-48980319(+)$1	1	130	156	18.2505
(..((((.............)))).)	chr9:137021901-137022207(+)$1	1	21	47	20.3348
(((((((............)))))))	chr18:56180475-56180720(-)$1	1	35	61	19.1042
((((((....................	chr12:133095259-133095558(+)$1	1	170	196	21.3283
((((......................	chr7:158234238-158234550(-)$1	1	56	82	21.0230
((.(((....................	chr19:33949114-33949420(-)$1	1	92	118	21.3181
(((.((....................	chr16:81611741-81612005(+)$1	1	55	81	20.6563
(((((.....................	chr3:126258648-126258906(+)$1	1	149	175	21.4644
((((((....................	chr19:56670638-56670902(+)$1	1	217	243	21.4020
(((((((.............))))))	chr19:2188466-2188726(+)$1	1	203	229	20.1487
((((((((............))))))	chr11:2152337-2152542(-)$1	1	106	132	19.8910
(((.((....................	chr6:167237908-167238197(-)$1	1	110	136	20.6563
)(((.((............)).))).	chrX:152956292-152956527(+)$1	1	24	50	18.1512
(((((...............)))))(	chr6:170167580-170167853(+)$1	1	139	165	19.5907
(((((.....................	chrX:3740667-3740926(-)$1	1	130	156	21.4644
((((((..............))))..	chr11:2153236-2153438(-)$1	1	21	47	21.9049
((((((.............)))))).	chr4:3230920-3231290(+)$1	1	81	107	18.8203
.((.((((............))))..	chr9:123292187-123292441(-)$1	1	150	176	19.2856
...(((((............))))).	chr3:24536346-24536604(-)$1	1	144	170	17.1879
(((((...............))))).	chr9:97845740-97846092(+)$1	1	212	238	19.7698
(((((((((...........))))).	chr4:17805911-17806195(-)$1	1	165	191	17.2515

#PSSM
f : 0.26	g : 0.12	e : 0.12	d : 0.11	[ : 0.09	: : 0.08	= : 0.04	! : 0.02	^ : 0.02	c : 0.02	# : 0.01	" : 0.01	b : 0.01	h : 0.01	
f : 0.25	d : 0.15	e : 0.12	g : 0.11	: : 0.08	c : 0.07	[ : 0.04	! : 0.04	^ : 0.02	= : 0.02	b : 0.02	# : 0.01	" : 0.01	
d : 0.25	f : 0.21	e : 0.12	g : 0.11	: : 0.05	c : 0.05	[ : 0.04	b : 0.04	^ : 0.02	= : 0.02	! : 0.02	" : 0.01	
e : 0.21	d : 0.21	f : 0.18	c : 0.12	g : 0.09	[ : 0.08	^ : 0.02	= : 0.02	! : 0.01	b : 0.01	
e : 0.25	d : 0.19	f : 0.16	g : 0.09	^ : 0.07	c : 0.07	[ : 0.07	= : 0.02	b : 0.02	! : 0.01	
f : 0.16	e : 0.15	d : 0.15	^ : 0.11	c : 0.11	g : 0.09	x : 0.08	b : 0.04	a : 0.02	= : 0.02	[ : 0.01	
^ : 0.32	e : 0.15	x : 0.12	w : 0.11	v : 0.05	g : 0.05	d : 0.05	c : 0.04	f : 0.01	y : 0.01	a : 0.01	= : 0.01	b : 0.01	
^ : 0.32	e : 0.14	x : 0.12	v : 0.11	w : 0.11	u : 0.07	c : 0.04	d : 0.04	y : 0.01	= : 0.01	
^ : 0.32	u : 0.23	x : 0.12	v : 0.11	w : 0.11	e : 0.05	y : 0.01	d : 0.01	
^ : 0.32	u : 0.23	x : 0.12	v : 0.11	w : 0.11	t : 0.07	y : 0.01	
^ : 0.32	u : 0.23	x : 0.12	v : 0.11	w : 0.11	t : 0.07	y : 0.01	
^ : 0.32	u : 0.23	x : 0.12	v : 0.11	w : 0.11	t : 0.07	y : 0.01	
^ : 0.32	u : 0.23	x : 0.12	v : 0.11	w : 0.11	t : 0.07	y : 0.01	
^ : 0.32	u : 0.23	x : 0.12	v : 0.11	w : 0.11	t : 0.07	y : 0.01	
^ : 0.32	u : 0.23	x : 0.12	v : 0.11	w : 0.11	t : 0.07	y : 0.01	
^ : 0.32	u : 0.23	x : 0.12	v : 0.11	w : 0.11	t : 0.07	y : 0.01	
^ : 0.32	u : 0.23	x : 0.12	v : 0.11	w : 0.11	t : 0.07	y : 0.01	
^ : 0.32	u : 0.23	x : 0.12	v : 0.11	w : 0.11	t : 0.07	y : 0.01	
^ : 0.32	u : 0.23	x : 0.12	v : 0.11	w : 0.11	t : 0.07	y : 0.01	
^ : 0.32	u : 0.16	x : 0.12	w : 0.11	t : 0.07	v : 0.05	f : 0.04	g : 0.02	d : 0.01	y : 0.01	c : 0.01	a : 0.01	b : 0.01	
^ : 0.30	e : 0.21	d : 0.15	f : 0.07	c : 0.07	g : 0.07	x : 0.04	y : 0.01	] : 0.01	a : 0.01	= : 0.01	b : 0.01	
^ : 0.30	e : 0.21	d : 0.16	f : 0.08	c : 0.07	g : 0.07	= : 0.02	] : 0.02	y : 0.01	a : 0.01	
^ : 0.30	e : 0.21	d : 0.18	f : 0.08	c : 0.07	g : 0.07	= : 0.02	2 : 0.01	3 : 0.01	b : 0.01	
^ : 0.30	e : 0.21	d : 0.16	f : 0.08	g : 0.07	] : 0.04	3 : 0.02	= : 0.02	2 : 0.01	b : 0.01	4 : 0.01	c : 0.01	
^ : 0.30	e : 0.21	f : 0.09	] : 0.07	g : 0.07	d : 0.05	3 : 0.04	: : 0.02	= : 0.02	c : 0.02	2 : 0.02	b : 0.01	4 : 0.01	
^ : 0.30	f : 0.12	: : 0.12	d : 0.07	g : 0.07	c : 0.05	= : 0.04	b : 0.04	] : 0.04	4 : 0.02	3 : 0.02	2 : 0.02	> : 0.01	e : 0.01	

#score	1414.0844352596073
#seq	71
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_CDS_m1_run2.txt

#BEAR
ccbb!!ccc!!cccmmmmccc]ccc22bb]ccc	chr15:28359724-28359990(-)$1	266	146	179	10.7952
eeee!!a[bb[cccnnnnnccc]bb]aeeeee:	chr1:19474991-19475206(-)$1	215	83	116	11.0727
eeeee"""bb[cccnnnnnccc22bb333eeee	chr21:38538696-38538951(+)$1	255	133	166	12.1434
hhh[dddd"""cccnnnnnccc333dddd]hhh	chr6:90453314-90453532(-)$1	218	53	86	12.9201
a[ccc[ccc!!bboooooobb22ccc]ccca22	chr15:63932450-63932718(-)$1	268	160	193	12.2710
gg"""eeeeecccannnnna]ccc]eeeeeggg	chr16:23101922-23102187(-)$1	265	173	206	12.4246
ddd[eeeeeccc[annnnna]ccc]eeeee22d	chr15:28358661-28358911(-)$1	250	123	156	11.5031
eeeee[ccc!!cccnnnnnccc22ccceeeeec	chr1:39898151-39898421(+)$1	270	117	150	13.5928
=============ccclllccc333========	chr18:19192214-19192503(+)$1	289	227	260	13.2611
[ccc[dddd!!cccmmmmccc22dddd]ccc]g	chr14:31644161-31644372(-)$1	211	90	123	10.9457
hhhh[ccc####cccmmmmccc22ccc22hhhh	chr4:151769869-151770091(-)$1	222	89	122	10.6069
:dddd[agggggggooooooggggggg22a]dd	chr13:20346367-20346634(-)$1	267	129	162	9.9326
"""ggggggg[cccooooooccc]ggggggg55	chr8:100148792-100149082(+)$1	290	71	104	12.1116
ddddd[ccc!!bboooooobb]ccc]dddd22d	chr14:55369278-55369607(-)$1	329	265	298	10.6845
[ccc!!eeeeeddddmmmmdddd333eeeee22	chr19:55628512-55628809(-)$1	297	106	139	10.0447
'bb[eeeee!!ddddllldddd4444eeeee]b	chr4:79176298-79176559(+)$1	261	85	118	10.0190
###eeeeeaeeeeennnnneeeee4444a]eee	chr20:25439032-25439265(-)$1	233	26	59	10.3210
dddd[a!!aa!!bbnnnnnbb22a]a22a]ddd	chr17:4790341-4790568(+)$1	227	57	90	11.2557
!ccc[bb!!ddddoooooodddd4444bb]ccc	chr8:100513814-100514077(+)$1	263	181	214	10.8330
cc!!eeeee!!bboooooobb]eeeee22ccc:	chr1:39824378-39824634(+)$1	256	172	205	10.2403
ccc[cccgggggggnnnnnggggggg]ccc]cc	chr17:57760167-57760391(+)$1	224	111	144	12.2245
c####dddd"""bboooooobb22dddd4444c	chr12:112757047-112757305(-)$1	258	223	256	11.4118
ddd===========nnnnn===========:::	chr3:13429801-13430035(-)$1	234	34	67	10.7124
eee!!iiiiiiiiinnnnniiiiiiiii]eeee	chr17:65889698-65889941(+)$1	243	166	199	12.5700
ee####a[bb[bboooooobb]bb]a4444eee	chr7:72861492-72861719(-)$1	227	102	135	10.2950
'''ccceeeeecccnnnnnccc]eeeee]ccc]	chr15:28437141-28437383(-)$1	242	132	165	10.2981
bb[ccc[ccc!!ccclllccc22ccc]cccbb:	chrX:70598647-70598908(+)$1	261	211	244	9.8899
===========[bbmmmmbb]===========:	chr11:637282-637542(+)$1	260	130	163	10.4213
:=============lll=============:gg	chr2:86712752-86713007(+)$1	255	2	35	10.8388
d[bb[eeeee!!cccmmmmccc4444eeeee]b	chr1:154574922-154575177(-)$1	255	166	199	10.8393
hhhhhhhh"""cccnnnnnccc333hhhhhhhh	chr5:139908473-139908731(+)$1	258	116	149	12.2639
ggggggg"""ddddnnnnnddddgggggggfff	chr13:49688700-49688968(+)$1	268	56	89	11.6735
c[ccc[ccc[ccc[ammmmaccc]ccc]ccc]c	chr5:132387625-132388053(+)$1	428	177	210	11.9577
ccc[eeeee"""cccmmmmccc333eeeee]cc	chr6:56330850-56331095(-)$1	245	45	78	12.1651
iiiiiiiii!!cccnnnnnccc22iiiiiiiii	chr1:113231453-113231702(+)$1	249	159	192	14.9731
c####ccc!!ddddmmmmddddccc4444ccc:	chr11:63960445-63960676(+)$1	231	171	204	9.8115
hhhh[a[gggggggooooooggggggg]a]hhh	chr10:96305506-96305783(+)$1	277	34	67	10.9955
iiiiii$$$$$cccooooooccc22iiiiiiii	chr4:151837480-151837768(-)$1	288	100	133	12.8272
a[ccc!!ccc[aooooooa]ccc22ccc]a]ff	chr11:63953576-63953843(+)$1	267	217	250	11.5957
eeee[ffffffcccnnnnnccc333ffffffee	chr3:184046322-184046618(+)$1	296	202	235	11.7654
cc!!cccgggggggnnnnnggggggg]ccc333	chr2:232576509-232576723(+)$1	214	67	100	12.7695
::gggggggddddoooooodddd]gggggggee	chr17:37618270-37618525(+)$1	255	24	57	9.4099
gggg[ccc!!ddddnnnnnddddcccggggggg	chr3:48448190-48448401(-)$1	211	128	161	12.4874
ccc!!eeeeeddddoooooodddd]eeeee333	chr2:153467983-153468214(+)$1	231	157	190	11.5653
eeeee[ccc!!ccclllccc22ccceeeeeddd	chr19:4037218-4037475(+)$1	257	191	224	10.3749
iiiiiiiii!!ddddllldddd22iiiiiiiii	chr16:18863639-18863886(-)$1	247	36	69	12.1797
"""dddd####cccoooooocccdddd333eee	chr12:112654610-112654826(-)$1	216	46	79	12.2302
b[ggggggg[ccc[allla]ccc]ggggggg]b	chr12:123997747-123998010(-)$1	263	175	208	12.1947
cc"""ccc"""ddddmmmmdddd333ccc333c	chr2:32800125-32800375(+)$1	250	140	173	11.9269
iiiiiiiii!!cccnnnnnccc4444iiiiiii	chr14:39645237-39645453(+)$1	216	171	204	15.0696
&==========[bbmmmmbb]==========33	chr10:128796311-128796605(+)$1	294	109	142	10.9051
d!!ggggggg[cccnnnnncccggggggg4444	chr14:21836463-21836696(-)$1	233	35	68	13.8433
ddd[eeeeeccc[annnnna]ccc]eeeee22d	chr15:28358618-28358861(-)$1	243	73	106	11.5031
bbccc[ccc"""bbmmmmbbcccccc]bb333e	chr4:100495909-100496168(+)$1	259	147	180	10.3866
b[ccc[dddd[ccclllcccddddcccbb4444	chr20:60887441-60887671(-)$1	230	36	69	10.1673
""ffffff!!ddddoooooodddd]ffffff22	chr8:9629762-9630032(+)$1	270	82	115	10.0948
gggg!!dddd[cccooooooccc]dddd22ggg	chr9:134357662-134357932(+)$1	270	33	66	12.0483
c$$$$$ccc!!cccmmmmccc22ccc333ccc2	chr12:103306505-103306776(-)$1	271	55	88	11.3911
eeeeebbccc[cccnnnnnccc]ccc333bb]e	chr17:49232907-49233201(+)$1	294	249	282	12.2544

#otherMatches

#Seq PSSM
UGGCCAGGACAUUCAGUUGAGCUCCAAGCACAC	chr15:28359724-28359990(-)$1	266	146	179	10.7952
CAGGCUGGUUGUGAGUUCUUUAGAAGCCCUGGA	chr1:19474991-19475206(-)$1	215	83	116	11.0727
UGGAAAUUCUAACAACAAAUGUGAAGUAAUUCC	chr21:38538696-38538951(+)$1	255	133	166	12.1434
GUAUUUGAAACACAUGCCUUGUUAAUCAGUUGC	chr6:90453314-90453532(-)$1	218	53	86	12.9201
GCUGUUGUGUAACCCUCCAGUGCCACCACACCA	chr15:63932450-63932718(-)$1	268	160	193	12.2710
CAAGAGCAGGCAGCGACAAGAUUGUCCUGUUGG	chr16:23101922-23102187(-)$1	265	173	206	12.4246
GGAAGGAAUGGCCCGCGUUGUGCCUGUUCCCCU	chr15:28358661-28358911(-)$1	250	123	156	11.5031
UCUGGGUCCAAUUCGCCUGGAACAGGACCAGAC	chr1:39898151-39898421(+)$1	270	117	150	13.5928
GGAGGGCUUGGCCCGGAGUCCGGAAGGCUGGGC	chr18:19192214-19192503(+)$1	289	227	260	13.2611
UGUGCUUACCUUCAUUCGUGACAGUGGACAUCU	chr14:31644161-31644372(-)$1	211	90	123	10.9457
CUGGAGGAAUUUUGCGGCAGUGUCUCCGACUAG	chr4:151769869-151770091(-)$1	222	89	122	10.6069
AAGCUGUUGUGGUUGUGGAUGAUCGCGGUAGAG	chr13:20346367-20346634(-)$1	267	129	162	9.9326
UUAUUCUGUUUGCAUUGCUUUGUUGGCAGGAGA	chr8:100148792-100149082(+)$1	290	71	104	12.1116
CGGGGCGCCAGGUGCAGCAAUGGGUUCCCCGAG	chr14:55369278-55369607(-)$1	329	265	298	10.6845
UGCUgcgcgccgccgacccuggccccggcgccg	chr19:55628512-55628809(-)$1	297	106	139	10.0447
UUGACCUUCCAGAACCCUGUUCCUAUGAAGGCC	chr4:79176298-79176559(+)$1	261	85	118	10.0190
CUUGGAUGGAGAGGGUGCUCCUCUGUGCCGCGU	chr20:25439032-25439265(-)$1	233	26	59	10.3210
CUGCAGAGGAGACAGAAUAUGAGUACAGCGGCA	chr17:4790341-4790568(+)$1	227	57	90	11.2557
ACCAGUGGACGUGUUAGUUUAUGGAUGCAGUGG	chr8:100513814-100514077(+)$1	263	181	214	10.8330
UCAGGACACAGGCUGUGUUGUGGUGUCAAGACC	chr1:39824378-39824634(+)$1	256	172	205	10.2403
CUGUGUAGAUGGGAAAGAAUUCCGUCUUGCUCA	chr17:57760167-57760391(+)$1	224	111	144	12.2245
ACAUAAGCAAAAAGAAAAUGCUGCUGCUGCCCU	chr12:112757047-112757305(-)$1	258	223	256	11.4118
UGUGUUGGGGUUUGAUCAACAAACUUUGACAAC	chr3:13429801-13430035(-)$1	234	34	67	10.7124
AUUGCUGUAAAUAUACUAAAUGUUUAUAAAAUG	chr17:65889698-65889941(+)$1	243	166	199	12.5700
aUUAUGAGGUGGCUGGUUUGCGAUGUAAGUAUU	chr7:72861492-72861719(-)$1	227	102	135	10.2950
UUGCCACAGCAGCCAGCCAGGCAUGCUGCUGGA	chr15:28437141-28437383(-)$1	242	132	165	10.2981
GAUGGCUUACAAUGUUCAGCAAGGUGUGCUUCU	chrX:70598647-70598908(+)$1	261	211	244	9.8899
GCGCUGGUGGGGGGCGUGCUGCUCAUCGGCGCG	chr11:637282-637542(+)$1	260	130	163	10.4213
AUUUGUUCCUUUUGGUGUAGAAGGAACAAAACA	chr2:86712752-86713007(+)$1	255	2	35	10.8388
CCAGUAGUUUCCUGCUUAAGCAAAUAGAAUUUC	chr1:154574922-154575177(-)$1	255	166	199	10.8393
CUUUCUCUGCUGUGCCACCCACCAAAGAGAAAG	chr5:139908473-139908731(+)$1	258	116	149	12.2639
AUGGGUUAAUACAUCAUUUAUGUGACCCAUUCA	chr13:49688700-49688968(+)$1	268	56	89	11.6735
UUAGGCGCUCGCGUGGACACCGCAAGCCCCUCA	chr5:132387625-132388053(+)$1	428	177	210	11.9577
CCUGUAGUUUAGAAUUAUUAUUGACAACUAGAG	chr6:56330850-56331095(-)$1	245	45	78	12.1651
AUCUGGCCUACGUCACCAAGACUCGGGUCAGGU	chr1:113231453-113231702(+)$1	249	159	192	14.9731
GCUACUCCGAAGCUAUUAAGCUGGAUCCCCACA	chr11:63960445-63960676(+)$1	231	171	204	9.8115
CCGCGAAGGAGAAGCGCGCUUUUUUCCCUGGCG	chr10:96305506-96305783(+)$1	277	34	67	10.9955
GCAAAGGUCUUGGCUAUUCUGCUCAUUUUGUUG	chr4:151837480-151837768(-)$1	288	100	133	12.8272
uggccaggccgcgguaggggggcggggcgggcg	chr11:63953576-63953843(+)$1	267	217	250	11.5957
CCCAUGGGGGAGCUGUUCAGGUAAGUCCCCCUG	chr3:184046322-184046618(+)$1	296	202	235	11.7654
AUGGCCUGUUUUCUGUCGAGGAGAAUGAGGAAA	chr2:232576509-232576723(+)$1	214	67	100	12.7695
UUUUCCCUUCUUCAGGUCAGGGGAAAGGGAAUG	chr17:37618270-37618525(+)$1	255	24	57	9.4099
CCAGCGACCAAGAGAUGAACUCUGUCCUGGCUG	chr3:48448190-48448401(-)$1	211	128	161	12.4874
GGCUCCAAUAUAAGAAUUGACUUAUUAUUGCCU	chr2:153467983-153468214(+)$1	231	157	190	11.5653
ACGAGAUCGAGUACCUGGUGGACGGCUCGUGGU	chr19:4037218-4037475(+)$1	257	191	224	10.3749
AGGAAUUUAUGAAUGUAACAUUGUUGAGUUCuu	chr16:18863639-18863886(-)$1	247	36	69	12.1797
GUCUCAGGCCCAGGAUUAGCCCUCUGAUUGCUG	chr12:112654610-112654826(-)$1	216	46	79	12.2302
GGAGGAGUUUGUGGCUUUGGCACUGACUUCUGU	chr12:123997747-123998010(-)$1	263	175	208	12.1947
GGAAUUGCUUCGGGCCAUUGCUUCUUGUGCUGC	chr2:32800125-32800375(+)$1	250	140	173	11.9269
UGUUGGUUUGAACAAAACCUGUGAUAAAAUCAA	chr14:39645237-39645453(+)$1	216	171	204	15.0696
GUUUGUGAACCUCAAAAAUGUGGUUUGUAAAAU	chr10:128796311-128796605(+)$1	294	109	142	10.9051
UGAUACCAAGGACUUUGCUAGUUUUGGUAAUGA	chr14:21836463-21836696(-)$1	233	35	68	13.8433
GGAAGGAAUGGCCCGCGUUGUGCCUGUUCCCCU	chr15:28358618-28358861(-)$1	243	73	106	11.5031
GCUGGUCAAUAUGAUUCUUCUUGCUGUGCUUUU	chr4:100495909-100496168(+)$1	259	147	180	10.3866
CUGGGCUUGGAGGUGGCGCCCUGACCCGCAUCC	chr20:60887441-60887671(-)$1	230	36	69	10.1673
augagggacagauaggcuuauauuaucucucua	chr8:9629762-9630032(+)$1	270	82	115	10.0948
UUUACUCUCUGGAUAAUCGAGUUGGGAGUUUGA	chr9:134357662-134357932(+)$1	270	33	66	12.0483
CUAAACUGUGGAAAAUGUUUUAAACAAAUGCAU	chr12:103306505-103306776(-)$1	271	55	88	11.3911
UGUUCCCAUUUUGAUUCCUUCAUAGUAUAGGAG	chr17:49232907-49233201(+)$1	294	249	282	12.2544

#DB
((((..(((..(((....))).)))..)).)))	chr15:28359724-28359990(-)$1	1	146	179	10.7952
((((..(.((.(((.....))).)).)))))).	chr1:19474991-19475206(-)$1	1	83	116	11.0727
(((((...((.(((.....)))..))...))))	chr21:38538696-38538951(+)$1	1	133	166	12.1434
(((.((((...(((.....)))...)))).)))	chr6:90453314-90453532(-)$1	1	53	86	12.9201
(.(((.(((..((......))..))).))))..	chr15:63932450-63932718(-)$1	1	160	193	12.2710
((...(((((((((.....).))).))))))))	chr16:23101922-23102187(-)$1	1	173	206	12.4246
(((.((((((((.(.....).))).)))))..)	chr15:28358661-28358911(-)$1	1	123	156	11.5031
(((((.(((..(((.....)))..)))))))))	chr1:39898151-39898421(+)$1	1	117	150	13.5928
((((((((((((((((...)))...))))))))	chr18:19192214-19192503(+)$1	1	227	260	13.2611
.(((.((((..(((....)))..)))).))).)	chr14:31644161-31644372(-)$1	1	90	123	10.9457
((((.(((....(((....)))..)))..))))	chr4:151769869-151770091(-)$1	1	89	122	10.6069
.((((.((((((((......)))))))..).))	chr13:20346367-20346634(-)$1	1	129	162	9.9326
...(((((((.(((......))).)))))))..	chr8:100148792-100149082(+)$1	1	71	104	12.1116
(((((.(((..((......)).))).))))..)	chr14:55369278-55369607(-)$1	1	265	298	10.6845
.(((..(((((((((....))))...)))))..	chr19:55628512-55628809(-)$1	1	106	139	10.0447
.((.(((((..((((...))))....))))).)	chr4:79176298-79176559(+)$1	1	85	118	10.0190
...(((((((((((.....)))))....).)))	chr20:25439032-25439265(-)$1	1	26	59	10.3210
((((.(..((..((.....))..).)..).)))	chr17:4790341-4790568(+)$1	1	57	90	11.2557
.(((.((..((((......))))....)).)))	chr8:100513814-100514077(+)$1	1	181	214	10.8330
((..(((((..((......)).)))))..))).	chr1:39824378-39824634(+)$1	1	172	205	10.2403
(((.((((((((((.....))))))).))).))	chr17:57760167-57760391(+)$1	1	111	144	12.2245
(....((((...((......))..))))....)	chr12:112757047-112757305(-)$1	1	223	256	11.4118
)))(((((((((((.....)))))))))))...	chr3:13429801-13430035(-)$1	1	34	67	10.7124
(((..(((((((((.....))))))))).))))	chr17:65889698-65889941(+)$1	1	166	199	12.5700
((....(.((.((......)).)).)....)))	chr7:72861492-72861719(-)$1	1	102	135	10.2950
...(((((((((((.....))).))))).))).	chr15:28437141-28437383(-)$1	1	132	165	10.2981
((.(((.(((..(((...)))..))).))))).	chrX:70598647-70598908(+)$1	1	211	244	9.8899
(((((((((((.((....)).))))))))))).	chr11:637282-637542(+)$1	1	130	163	10.4213
.(((((((((((((...))))))))))))).((	chr2:86712752-86713007(+)$1	1	2	35	10.8388
(.((.(((((..(((....)))....))))).)	chr1:154574922-154575177(-)$1	1	166	199	10.8393
((((((((...(((.....)))...))))))))	chr5:139908473-139908731(+)$1	1	116	149	12.2639
(((((((...((((.....))))))))))))))	chr13:49688700-49688968(+)$1	1	56	89	11.6735
(.(((.(((.(((.(....)))).))).))).)	chr5:132387625-132388053(+)$1	1	177	210	11.9577
(((.(((((...(((....)))...))))).))	chr6:56330850-56331095(-)$1	1	45	78	12.1651
(((((((((..(((.....)))..)))))))))	chr1:113231453-113231702(+)$1	1	159	192	14.9731
(....(((..((((....)))))))....))).	chr11:63960445-63960676(+)$1	1	171	204	9.8115
((((.(.(((((((......))))))).).)))	chr10:96305506-96305783(+)$1	1	34	67	10.9955
((((((.....(((......)))..))))))))	chr4:151837480-151837768(-)$1	1	100	133	12.8272
(.(((..(((.(......).)))..))).).))	chr11:63953576-63953843(+)$1	1	217	250	11.5957
((((.(((((((((.....)))...))))))))	chr3:184046322-184046618(+)$1	1	202	235	11.7654
((..((((((((((.....))))))).)))...	chr2:232576509-232576723(+)$1	1	67	100	12.7695
..(((((((((((......)))).)))))))((	chr17:37618270-37618525(+)$1	1	24	57	9.4099
((((.(((..((((.....))))))))))))))	chr3:48448190-48448401(-)$1	1	128	161	12.4874
(((..(((((((((......)))).)))))...	chr2:153467983-153468214(+)$1	1	157	190	11.5653
(((((.(((..(((...)))..)))))))))))	chr19:4037218-4037475(+)$1	1	191	224	10.3749
(((((((((..((((...))))..)))))))))	chr16:18863639-18863886(-)$1	1	36	69	12.1797
...((((....(((......)))))))...)))	chr12:112654610-112654826(-)$1	1	46	79	12.2302
(.(((((((.(((.(...).))).))))))).)	chr12:123997747-123998010(-)$1	1	175	208	12.1947
((...(((...((((....))))...)))...)	chr2:32800125-32800375(+)$1	1	140	173	11.9269
(((((((((..(((.....)))....)))))))	chr14:39645237-39645453(+)$1	1	171	204	15.0696
.((((((((((.((....)).))))))))))..	chr10:128796311-128796605(+)$1	1	109	142	10.9051
(..(((((((.(((.....))))))))))....	chr14:21836463-21836696(-)$1	1	35	68	13.8433
(((.((((((((.(.....).))).)))))..)	chr15:28358618-28358861(-)$1	1	73	106	11.5031
(((((.(((...((....)))))))).))...)	chr4:100495909-100496168(+)$1	1	147	180	10.3866
(.(((.((((.(((...))))))))))))....	chr20:60887441-60887671(-)$1	1	36	69	10.1673
..((((((..((((......)))).))))))..	chr8:9629762-9630032(+)$1	1	82	115	10.0948
((((..((((.(((......))).))))..)))	chr9:134357662-134357932(+)$1	1	33	66	12.0483
(.....(((..(((....)))..)))...))).	chr12:103306505-103306776(-)$1	1	55	88	11.3911
((((((((((.(((.....))).)))...)).)	chr17:49232907-49233201(+)$1	1	249	282	12.2544

#PSSM
c : 0.18	e : 0.13	d : 0.11	h : 0.06	g : 0.06	b : 0.06	i : 0.06	: : 0.05	" : 0.05	a : 0.03	= : 0.03	[ : 0.03	' : 0.03	# : 0.01	! : 0.01	& : 0.01	
c : 0.16	e : 0.13	[ : 0.10	d : 0.10	h : 0.06	g : 0.06	= : 0.06	i : 0.06	" : 0.05	b : 0.05	# : 0.05	' : 0.01	: : 0.01	! : 0.01	$ : 0.01	
c : 0.18	e : 0.11	d : 0.10	g : 0.08	h : 0.06	" : 0.06	= : 0.06	# : 0.06	i : 0.06	b : 0.05	! : 0.05	' : 0.01	[ : 0.01	f : 0.01	$ : 0.01	
c : 0.16	e : 0.11	g : 0.11	[ : 0.10	= : 0.08	d : 0.06	! : 0.06	i : 0.06	h : 0.05	# : 0.05	b : 0.03	" : 0.03	f : 0.01	$ : 0.01	
e : 0.16	c : 0.15	[ : 0.13	! : 0.10	= : 0.08	g : 0.08	d : 0.06	i : 0.06	# : 0.05	" : 0.03	h : 0.01	f : 0.01	$ : 0.01	
e : 0.15	[ : 0.13	c : 0.13	! : 0.08	= : 0.08	g : 0.08	i : 0.08	d : 0.06	a : 0.03	b : 0.03	f : 0.03	" : 0.01	# : 0.01	h : 0.01	$ : 0.01	
c : 0.23	e : 0.18	d : 0.10	= : 0.08	g : 0.08	i : 0.06	a : 0.05	! : 0.03	b : 0.03	[ : 0.03	f : 0.03	" : 0.01	h : 0.01	$ : 0.01	
c : 0.25	e : 0.18	g : 0.13	d : 0.08	= : 0.08	i : 0.06	[ : 0.03	" : 0.03	! : 0.03	f : 0.03	h : 0.01	$ : 0.01	# : 0.01	
c : 0.18	e : 0.16	g : 0.13	= : 0.08	" : 0.06	d : 0.06	! : 0.06	i : 0.06	b : 0.05	# : 0.03	a : 0.03	$ : 0.01	f : 0.01	
! : 0.25	" : 0.11	e : 0.10	g : 0.10	c : 0.08	= : 0.08	d : 0.06	b : 0.05	# : 0.03	[ : 0.03	a : 0.01	i : 0.01	$ : 0.01	f : 0.01	
! : 0.25	[ : 0.15	d : 0.11	" : 0.10	c : 0.08	= : 0.08	g : 0.06	e : 0.05	# : 0.03	i : 0.01	$ : 0.01	f : 0.01	
c : 0.42	d : 0.18	b : 0.06	g : 0.06	= : 0.05	! : 0.05	" : 0.05	[ : 0.03	# : 0.01	e : 0.01	i : 0.01	a : 0.01	
c : 0.45	d : 0.18	b : 0.15	g : 0.06	= : 0.05	[ : 0.03	e : 0.01	i : 0.01	o : 0.01	
c : 0.42	d : 0.15	o : 0.11	b : 0.08	g : 0.06	a : 0.05	= : 0.03	[ : 0.03	e : 0.01	i : 0.01	
n : 0.37	o : 0.27	m : 0.11	c : 0.08	d : 0.06	l : 0.05	a : 0.03	
n : 0.37	o : 0.27	m : 0.22	l : 0.11	c : 0.01	
n : 0.37	o : 0.27	m : 0.22	l : 0.13	
n : 0.37	o : 0.27	m : 0.22	l : 0.08	c : 0.03	= : 0.01	
n : 0.37	o : 0.25	c : 0.10	m : 0.10	d : 0.05	b : 0.05	a : 0.03	l : 0.01	= : 0.01	
c : 0.35	o : 0.15	d : 0.15	b : 0.13	a : 0.06	g : 0.03	= : 0.03	] : 0.03	e : 0.01	i : 0.01	
c : 0.45	d : 0.20	b : 0.10	] : 0.08	g : 0.06	= : 0.03	e : 0.01	i : 0.01	2 : 0.01	
c : 0.44	d : 0.20	2 : 0.10	] : 0.06	g : 0.06	= : 0.06	e : 0.01	b : 0.01	i : 0.01	
c : 0.25	2 : 0.18	d : 0.15	3 : 0.08	g : 0.08	= : 0.06	] : 0.05	4 : 0.05	e : 0.03	i : 0.01	b : 0.01	
c : 0.22	2 : 0.13	3 : 0.11	g : 0.10	d : 0.08	] : 0.08	4 : 0.06	= : 0.06	e : 0.05	b : 0.03	a : 0.01	i : 0.01	
c : 0.23	g : 0.15	3 : 0.11	] : 0.11	4 : 0.08	d : 0.06	= : 0.06	i : 0.05	b : 0.03	e : 0.03	2 : 0.03	
c : 0.18	g : 0.15	e : 0.13	4 : 0.10	d : 0.08	= : 0.08	i : 0.06	] : 0.03	3 : 0.03	a : 0.03	f : 0.03	2 : 0.01	b : 0.01	h : 0.01	
e : 0.18	g : 0.13	d : 0.10	c : 0.10	] : 0.08	= : 0.08	i : 0.08	4 : 0.06	3 : 0.05	2 : 0.03	f : 0.03	a : 0.01	h : 0.01	
e : 0.20	c : 0.10	g : 0.10	= : 0.08	i : 0.08	b : 0.06	3 : 0.06	d : 0.06	2 : 0.06	] : 0.05	4 : 0.05	f : 0.03	h : 0.01	
e : 0.18	c : 0.11	g : 0.10	= : 0.08	b : 0.06	3 : 0.06	2 : 0.06	i : 0.06	a : 0.05	4 : 0.05	] : 0.05	d : 0.03	f : 0.03	h : 0.01	
e : 0.22	c : 0.16	] : 0.10	= : 0.08	g : 0.08	4 : 0.06	i : 0.06	3 : 0.05	h : 0.03	a : 0.03	f : 0.03	d : 0.01	2 : 0.01	b : 0.01	
e : 0.16	c : 0.13	g : 0.10	h : 0.06	] : 0.06	i : 0.06	3 : 0.06	2 : 0.05	= : 0.05	4 : 0.05	f : 0.05	d : 0.03	: : 0.03	b : 0.03	a : 0.01	
e : 0.15	c : 0.13	2 : 0.10	] : 0.10	3 : 0.08	h : 0.06	g : 0.06	i : 0.06	d : 0.05	4 : 0.05	= : 0.03	f : 0.03	5 : 0.01	: : 0.01	b : 0.01	
e : 0.15	c : 0.13	: : 0.10	d : 0.10	g : 0.08	h : 0.06	2 : 0.06	i : 0.06	b : 0.05	3 : 0.05	f : 0.03	4 : 0.03	= : 0.01	5 : 0.01	] : 0.01	

#score	679.3133638259491
#seq	59
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF233ZXV_DHX30_CDS_m1_run1.txt

#BEAR
c!!aeeeee[ffffffooooooffffffeeeee]a	chrM:8024-8253(+)$1	229	148	183	20.0226
eee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14206-14410(-)$1	204	39	74	17.9125
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12751-12970(+)$1	219	15	50	23.4826
a[eeeee####eeeeemmmmeeeee333eeeee]a	chrM:14184-14399(-)$1	215	115	150	17.6827
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12691-12902(+)$1	211	75	110	23.4826
bb!!eeeee[ffffffooooooffffffeeeee]b	chrM:8097-8321(+)$1	224	75	110	20.5337
a[eeeee####eeeeemmmmeeeee333eeeee]a	chrM:14158-14384(-)$1	226	100	135	17.6827
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12725-12951(+)$1	226	41	76	23.4826
eee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14212-14422(-)$1	210	51	86	17.9125
bb!!eeeee[ffffffooooooffffffeeeee]b	chrM:8070-8275(+)$1	205	102	137	20.5337
bb!!eeeee[ffffffooooooffffffeeeee]b	chrM:8092-8297(+)$1	205	80	115	20.5337
bb!!eeeee[ffffffooooooffffffeeeee]b	chrM:8079-8292(+)$1	213	93	128	20.5337
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12702-12925(+)$1	223	64	99	23.4826
a[eeeee####eeeeemmmmeeeee333eeeee]a	chrM:14201-14404(-)$1	203	120	155	17.6827
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12685-12891(+)$1	206	81	116	23.4826
bb!!eeeee[ffffffooooooffffffeeeee]b	chrM:8053-8270(+)$1	217	119	154	20.5337
eee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14223-14445(-)$1	222	74	109	17.9125
eeeeedddd!!ddddoooooodddd333dddd:GG	chr2:20196840-20197072(-)$1	232	176	211	16.0799
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12671-12885(+)$1	214	95	130	23.4826
eee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14245-14492(-)$1	247	121	156	17.9125

#otherMatches

#Seq PSSM
GCUCUGAAAUCUGUGGAGCAAACCACAGUUUCAUG	chrM:8024-8253(+)$1	229	148	183	20.0226
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14206-14410(-)$1	204	39	74	17.9125
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12751-12970(+)$1	219	15	50	23.4826
GGGUCAGGGUUGAUUCGGGAGGAUCCUAUUGGUGC	chrM:14184-14399(-)$1	215	115	150	17.6827
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12691-12902(+)$1	211	75	110	23.4826
GCUCUGAAAUCUGUGGAGCAAACCACAGUUUCAUG	chrM:8097-8321(+)$1	224	75	110	20.5337
GGGUCAGGGUUGAUUCGGGAGGAUCCUAUUGGUGC	chrM:14158-14384(-)$1	226	100	135	17.6827
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12725-12951(+)$1	226	41	76	23.4826
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14212-14422(-)$1	210	51	86	17.9125
GCUCUGAAAUCUGUGGAGCAAACCACAGUUUCAUG	chrM:8070-8275(+)$1	205	102	137	20.5337
GCUCUGAAAUCUGUGGAGCAAACCACAGUUUCAUG	chrM:8092-8297(+)$1	205	80	115	20.5337
GCUCUGAAAUCUGUGGAGCAAACCACAGUUUCAUG	chrM:8079-8292(+)$1	213	93	128	20.5337
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12702-12925(+)$1	223	64	99	23.4826
GGGUCAGGGUUGAUUCGGGAGGAUCCUAUUGGUGC	chrM:14201-14404(-)$1	203	120	155	17.6827
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12685-12891(+)$1	206	81	116	23.4826
GCUCUGAAAUCUGUGGAGCAAACCACAGUUUCAUG	chrM:8053-8270(+)$1	217	119	154	20.5337
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14223-14445(-)$1	222	74	109	17.9125
AGGUGAGGAUCAGCCCUUUAAGGCUAUUUCCUUUG	chr2:20196840-20197072(-)$1	232	176	211	16.0799
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12671-12885(+)$1	214	95	130	23.4826
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14245-14492(-)$1	247	121	156	17.9125

#DB
(..((((((.((((((......))))))))))).)	chrM:8024-8253(+)$1	1	148	183	20.0226
(((.((((.((.(((......)))..)).)))).)	chrM:14206-14410(-)$1	1	39	74	17.9125
(((..(((((.((((......))))...))))).)	chrM:12751-12970(+)$1	1	15	50	23.4826
(.(((((....(((((....)))))...))))).)	chrM:14184-14399(-)$1	1	115	150	17.6827
(((..(((((.((((......))))...))))).)	chrM:12691-12902(+)$1	1	75	110	23.4826
((..(((((.((((((......))))))))))).)	chrM:8097-8321(+)$1	1	75	110	20.5337
(.(((((....(((((....)))))...))))).)	chrM:14158-14384(-)$1	1	100	135	17.6827
(((..(((((.((((......))))...))))).)	chrM:12725-12951(+)$1	1	41	76	23.4826
(((.((((.((.(((......)))..)).)))).)	chrM:14212-14422(-)$1	1	51	86	17.9125
((..(((((.((((((......))))))))))).)	chrM:8070-8275(+)$1	1	102	137	20.5337
((..(((((.((((((......))))))))))).)	chrM:8092-8297(+)$1	1	80	115	20.5337
((..(((((.((((((......))))))))))).)	chrM:8079-8292(+)$1	1	93	128	20.5337
(((..(((((.((((......))))...))))).)	chrM:12702-12925(+)$1	1	64	99	23.4826
(.(((((....(((((....)))))...))))).)	chrM:14201-14404(-)$1	1	120	155	17.6827
(((..(((((.((((......))))...))))).)	chrM:12685-12891(+)$1	1	81	116	23.4826
((..(((((.((((((......))))))))))).)	chrM:8053-8270(+)$1	1	119	154	20.5337
(((.((((.((.(((......)))..)).)))).)	chrM:14223-14445(-)$1	1	74	109	17.9125
)))))((((..((((......))))...)))).))	chr2:20196840-20197072(-)$1	1	176	211	16.0799
(((..(((((.((((......))))...))))).)	chrM:12671-12885(+)$1	1	95	130	23.4826
(((.((((.((.(((......)))..)).)))).)	chrM:14245-14492(-)$1	1	121	156	17.9125

#PSSM
= : 0.30	e : 0.25	b : 0.25	a : 0.15	c : 0.05	
= : 0.30	e : 0.25	b : 0.25	[ : 0.15	! : 0.05	
e : 0.39	! : 0.30	= : 0.30	
! : 0.54	[ : 0.20	e : 0.20	a : 0.05	
e : 0.49	! : 0.30	d : 0.20	
e : 0.75	d : 0.25	
e : 0.75	d : 0.25	
e : 0.60	d : 0.25	# : 0.15	
e : 0.60	[ : 0.20	# : 0.15	d : 0.05	
[ : 0.30	e : 0.30	b : 0.20	# : 0.15	! : 0.05	
f : 0.30	[ : 0.30	b : 0.20	# : 0.15	! : 0.05	
d : 0.35	f : 0.30	[ : 0.20	e : 0.15	
d : 0.35	f : 0.30	c : 0.20	e : 0.15	
d : 0.35	f : 0.30	c : 0.20	e : 0.15	
d : 0.35	f : 0.30	c : 0.20	e : 0.15	
o : 0.54	f : 0.30	e : 0.15	
o : 0.85	m : 0.15	
o : 0.85	m : 0.15	
o : 0.85	m : 0.15	
o : 0.85	m : 0.15	
o : 0.85	e : 0.15	
d : 0.35	o : 0.30	c : 0.20	e : 0.15	
d : 0.35	f : 0.30	c : 0.20	e : 0.15	
d : 0.35	f : 0.30	c : 0.20	e : 0.15	
d : 0.35	f : 0.30	2 : 0.20	e : 0.15	
3 : 0.49	f : 0.30	2 : 0.20	
3 : 0.49	f : 0.30	b : 0.20	
3 : 0.49	f : 0.30	b : 0.20	
e : 0.75	] : 0.20	d : 0.05	
e : 0.75	d : 0.25	
e : 0.75	d : 0.25	
e : 0.75	d : 0.25	
e : 0.75	d : 0.20	: : 0.05	
] : 0.95	G : 0.05	
= : 0.30	b : 0.25	a : 0.20	e : 0.20	G : 0.05	

#score	404.36548021535
#seq	20
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_transcript_m1_run1.txt

#BEAR
2eeeeeddddeeeee[cccooooooccceeeee]dddd:h	chr16:1428923-1429172(-)$1	249	120	160	11.6659
ffffff!!a[ccc!!bb[ammmma]bb22ccc]a22ffff	chr19:34873955-34874213(+)$1	258	9	49	11.8836
cc[ccc!!a[ccc[gggggggmmmmgggggggccc]a]cc	chr20:1165115-1165373(-)$1	258	93	133	10.9128
========="""ffffffmmmmffffff==========]d	chr3:128214515-128214763(+)$1	248	177	217	10.8747
ddddbb[ffffff!!a[bboooooobb]a22ffffff]bb	chr19:49605894-49606150(+)$1	256	67	107	13.9791
b"""ffffff!!a[bb[bboooooobbbb]a22ffffffb	chr12:133271777-133272098(+)$1	321	83	123	13.0867
##bb[ddddeeeee"""bbnnnnnbb333eeeee22dddd	chr19:34879665-34879907(+)$1	242	39	79	12.1903
"dddd"""ffffff[cccooooooccc22ffffff333dd	chr6:27860378-27860621(-)$1	243	189	229	15.4384
cceeeee####eeeee[bboooooobbeeeee4444eeee	chr19:4036310-4036585(+)$1	275	81	121	15.1078
dd"""ccc####bb[a[bbnnnnnbb]a]bb]ccc22ddd	chr3:128211661-128211906(+)$1	245	126	166	12.9821
eeeee[ccc####bb!!cccmmmmccc22bb333ccc]ee	chr1:47696975-47697237(-)$1	262	164	204	12.4529
ddd[ggggggg[dddd[bboooooobb22dddd]gggggg	chr16:88960010-88960294(-)$1	284	78	118	15.9556
gggggg$$$$$iiiiiiiiimmmmiiiiiiiii333gggg	chr7:140086471-140086718(-)$1	247	85	125	11.5224
:ggggggg"""cccxxxxxxxxxxxxxxxccc4444gggg	chrM:6473-6699(+)$1	226	1	41	10.6053
ff$$$$$eeeee[ccc[bboooooobbccceeeee4444f	chr13:92000043-92000285(+)$1	242	125	165	14.3788
eee[eeeee"""cccrrrrrrrrrccc4444eeeeeeeee	chr13:114755449-114755716(-)$1	267	48	88	11.1653
[eeeee[a!!ffffff[cccoooooocccffffff]a]ee	chr19:34883298-34883523(+)$1	225	92	132	14.3426
ff####ccc$$$$$a[ccclllccc]a22cccffffff]f	chr8:1792434-1792707(+)$1	273	80	120	11.2361
hhhh[bb!!eeeee[ddddoooooodddd]eeeee]bb]h	chr9:98667218-98667466(+)$1	248	109	149	12.3501
iiiiiiiii[ccc!!ddddooooooddddccc]iiiiiii	chr1:245026573-245026813(-)$1	240	188	228	15.3400
========!!dddd[a[bboooooobb]a]dddd]=====	chr6:170707847-170708101(+)$1	254	205	245	16.9497
========[bbffffff!!bbmmmmbb22ffffff]bb22	chr22:49980973-49981242(-)$1	269	42	82	10.7648
##a[eeeee[ccc!!a[cccnnnnnccc]a22ccc]eeee	chr16:89041012-89041286(-)$1	274	135	175	12.8922
###ccc[eeeee####cccnnnnnccc333eeeeeccc22	chr11:65350554-65350798(+)$1	244	138	178	13.6084
:::ccc[ggggggg"""bboooooobb22ggggggg]ccc	chrX:41151984-41152225(+)$1	241	153	193	14.4957
d[dddd[ggggggg!!cccoooooocccggggggg]dddd	chr19:4034441-4034672(+)$1	231	144	184	15.6671
ccc[iiiiiiiii[ddddooooooddddiiiiiiiii]cc	chr1:46767588-46767829(-)$1	241	86	126	14.2455
[eeeee[dddd[bb[cccooooooccc22bb]dddd]eee	chrM:14222-14444(-)$1	222	70	110	14.2776
""dddd[eeeee!!ddddoooooodddd22eeeee]dddd	chr4:53578780-53579010(+)$1	230	16	56	13.3743
========[a"""ccc[annnnna]ccc333a]=======	chr2:55249902-55250146(-)$1	244	62	102	14.9196
c####ccc[a[ccc"""bboooooobb22ccc]a]ccc44	chr5:649830-650143(+)$1	313	162	202	17.2176
ffffff$$$$$ffffff!!aooooooa22ffffff22fff	chr8:1780273-1780564(+)$1	291	101	141	12.8953
[eeeee[dddd[bb[cccooooooccc22bb]dddd]eee	chrM:14252-14494(-)$1	242	120	160	14.2776
dddd[bb!!eeeee[ddddoooooodddd]eeeee]bb]d	chr6:153741507-153741734(+)$1	227	106	146	12.9111
!!ccc####ffffff!!aqqqqqqqqa22ffffff22ccc	chr10:70514845-70515096(+)$1	251	15	55	11.0735
=======dddd"""eeeeeooooooeeeee]dddd]====	chr3:195502102-195502353(-)$1	251	130	170	13.9081
cc[ccc####ffffff[cccmmmmccc333ffffff]ccc	chr16:89038324-89038603(-)$1	279	228	268	12.9699
ggggggffffff"""a[bbnnnnnbb]a4444ffffff22	chr19:47731985-47732272(-)$1	287	216	256	12.1668
dggggggg"""cccxxxxxxxxxxxxxxxccc4444gggg	chr14:32953278-32953517(-)$1	239	81	121	11.4735
d[dddd[dddd[bb[a[bboooooobbabb]dddd]dddd	chr6:157734750-157734995(-)$1	245	31	71	14.2598
cbb[eeeee[ffffff[bboooooobb22ffffff]eeee	chr16:89042792-89043037(-)$1	245	88	128	15.8024
ccc[a[a[a####bb!!bboooooobb22bb333a]a]a]	chr16:88586272-88586549(+)$1	277	219	259	17.4165
e[ccc!!eeeee[ccccccooooooccc]ccceeeeeccc	chr19:1418385-1418617(+)$1	232	170	210	15.1725
##ggggggg!!ccc[ddddnnnnnddddccc]ggggggg]	chr8:102217355-102217630(-)$1	275	212	252	12.5254
!ccc!!dddda[gggggggooooooggggggg]a]dddd6	chr17:80544320-80544571(+)$1	251	108	148	13.3708
cchhhhhhhh[cccbbcccooooooccc]bb]ccc22hhh	chr8:28387856-28388121(+)$1	265	142	182	12.9586
=========[eeeee[cccooooooccceeeee]======	chr2:232573552-232573812(+)$1	260	139	179	16.4121
#==========!!bbssssssssssbb22==========4	chr19:4034969-4035225(+)$1	256	88	128	13.0564
dd"""dddd[bb[ccc[bboooooobb]cccbb]dddddd	chr5:1326730-1327021(-)$1	291	21	61	14.0616
#eeeee!!===========oooooo===========333e	chr2:149639200-149639432(-)$1	232	112	152	16.5638
===========!!bb[aooooooa]bb333==========	chr16:88959377-88959637(-)$1	260	147	187	16.8236
bb!!bb[ddddeeeee!!bbnnnnnbb22eeeee4444dd	chr22:50034603-50034885(-)$1	282	123	163	11.9498
ggddddbb[ccc[ddddoooooodddd22ccc]bb]dddd	chr19:34874736-34874973(+)$1	237	18	58	11.6646
dd:gggggggbbdddd[bboooooobb]dddd22bb]ggg	chr5:1099393-1099669(-)$1	276	155	195	12.4129
===[bb"""ggggggg[bboooooobb]ggggggg>>>>>	chr6:31698293-31698552(-)$1	259	120	160	15.4995
eeeee[gggggggbb[cccooooooccc]bb]ggggggg2	chr19:893459-893690(+)$1	231	174	214	14.9379
ddddiiiiiiiii"""cccnnnnnccciiiiiiiii]ddd	chr9:96432752-96433007(+)$1	255	145	185	13.4240

#otherMatches

#Seq PSSM
CGGGGCUGAGGCAGCCUGGCCUGACCCAGCUGUACUCGCU	chr16:1428923-1429172(-)$1	249	120	160	11.6659
AAGAGUCCCGUCUGGUAGGGGUAUGUAGAAGAGGUAAUUC	chr19:34873955-34874213(+)$1	258	9	49	11.8836
uguguguguguguguacgcgcgugugcgugugACGGGGUA	chr20:1165115-1165373(-)$1	258	93	133	10.9128
AGGCCAGAGCUGGCUGGAGCCUUCCAGUCUCUGGUCUGUG	chr3:128214515-128214763(+)$1	248	177	217	10.8747
AGGAGCUCCCUAAAGUGCAUGGAAUUGGGGCUUGGGGUGU	chr19:49605894-49606150(+)$1	256	67	107	13.9791
guuaguuagccuagugaguuCCCUUGCCAGUUUGUUAGCC	chr12:133271777-133272098(+)$1	321	83	123	13.0867
UCUAGAGCUGAGUCUGggcugggugugguggcucauggcu	chr19:34879665-34879907(+)$1	242	39	79	12.1903
AGAAAUUUGUGGCCGAGUUCAAGCACUGAGGCCAUUACUU	chr6:27860378-27860621(-)$1	243	189	229	15.4384
AUACAGUCCACACUGUCACACAUCCGUACAGUCCACACUG	chr19:4036310-4036585(+)$1	275	81	121	15.1078
GUAGAGCUGGGAGCAGGGCGAGGUGCGCGGCAGGCGGGCU	chr3:128211661-128211906(+)$1	245	126	166	12.9821
CCUGUGUCCUUUAGAGGUGCGUUUGCAAAUCGCUgggggc	chr1:47696975-47697237(-)$1	262	164	204	12.4529
GCUUGGCCUUAGCUCUGUCACCUGAGAAAAGGGGUGAGGC	chr16:88960010-88960294(-)$1	284	78	118	15.9556
ucugguuagugcuugggugggacacugccugggaauaccg	chr7:140086471-140086718(-)$1	247	85	125	11.5224
ACAGCAGUCCUACUUCUCCUAUCUCUCCCAGUCCUAGCUG	chrM:6473-6699(+)$1	226	1	41	10.6053
AGCCCGCGGCCGGCCAGCCGAAGAUGGUGGCGGCUACUCC	chr13:92000043-92000285(+)$1	242	125	165	14.3788
cugcaggcuguacaggaagcaugguuggggaggccucagg	chr13:114755449-114755716(-)$1	267	48	88	11.1653
UGAGGAGGUAGGAUCUGUCCCUGGUAGGAGGGUCUGUGUC	chr19:34883298-34883523(+)$1	225	92	132	14.3426
GUAGAUGACAAAGACAGGAGAAUCCAGGGGUCACCGGGGC	chr8:1792434-1792707(+)$1	273	80	120	11.2361
aucuuggaagcuaagcagggucggaccugguuaguacuug	chr9:98667218-98667466(+)$1	248	109	149	12.3501
gccgcgggcgggcggcgggagggagcccggucggcccgcg	chr1:245026573-245026813(-)$1	240	188	228	15.3400
UUAGGAGUGAGUGGGAAAGGUAGAACUAUGUCAUAACUCU	chr6:170707847-170708101(+)$1	254	205	245	16.9497
GCCCACCUGCUGGCCUGGGCUGGGGAGGGCGGGCCUGGAG	chr22:49980973-49981242(-)$1	269	42	82	10.7648
CAGACCUGAGGGCACCUCAGCCCCACUGUGUGGCUGUCAG	chr16:89041012-89041286(-)$1	274	135	175	12.8922
GAUCUCAGGGCCCGAGGCUGGAAUGGCAGAGGCCCGAGUA	chr11:65350554-65350798(+)$1	244	138	178	13.6084
agaauccugauauuaaaacaagaaaguagaguaucaagau	chrX:41151984-41152225(+)$1	241	153	193	14.4957
GGAGUCCUUUGGGCCGGGCACGUGGGCUGCCUGAAUGGCU	chr19:4034441-4034672(+)$1	231	144	184	15.6671
GGCGGGGCUGUGGGUUGGGGACCGCUGGCCGCGGCCUGGC	chr1:46767588-46767829(-)$1	241	86	126	14.2455
GGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGG	chrM:14222-14444(-)$1	222	70	110	14.2776
GCUUUGCCCGCCUCGAGCUCCUCUGCUCCCGGCGGCCAGA	chr4:53578780-53579010(+)$1	230	16	56	13.3743
caugugcgggagagcagggugugugugugugugugugugu	chr2:55249902-55250146(-)$1	244	62	102	14.9196
UGUGAGGUGGGACUGUGAGGUGUGACUGAGGUGUGACUGU	chr5:649830-650143(+)$1	313	162	202	17.2176
GCGUCCGUAGAUGCCCGGAGGAGUUGCGGUGGGCGGGGGG	chr8:1780273-1780564(+)$1	291	101	141	12.8953
GGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGG	chrM:14252-14494(-)$1	242	120	160	14.2776
aucucggaagcuaagcagggucgggccugguuaguacuug	chr6:153741507-153741734(+)$1	227	106	146	12.9111
UUGUUGAAGUUUGAAUUAUAGCUUGUUUCUUUAAAAGAAC	chr10:70514845-70515096(+)$1	251	15	55	11.0735
GUCCCGGUGCUGCAUGGGGGUGGAUCCCCGAAGCAUUUGG	chr3:195502102-195502353(-)$1	251	130	170	13.9081
ACAACUUUCACUUCUCACCACAUGUGGACCGAGAAGCAGU	chr16:89038324-89038603(-)$1	279	228	268	12.9699
CUGUGAGUCCCAAGUGGAGUGAGUUUGUGUUGUGGGACUG	chr19:47731985-47732272(-)$1	287	216	256	12.1668
ACAGCAGUCUUACUUCUCCUAUCCCUCCCAGUCCUAGCUG	chr14:32953278-32953517(-)$1	239	81	121	11.4735
GAGCGCACACUGGGACACUGUGAUGAGGCCAGGUGAGCGC	chr6:157734750-157734995(-)$1	245	31	71	14.2598
CGGAUGGCCGUGUUGACUCACCUCAGAUAUCAACAGGGCC	chr16:89042792-89043037(-)$1	245	88	128	15.8024
gguggguggauagauggauggaugaaugaaugggugggug	chr16:88586272-88586549(+)$1	277	219	259	17.4165
ggggcggggcgggccgggcUGCUGUGCCGUGGCUGCUGUU	chr19:1418385-1418617(+)$1	232	170	210	15.1725
AGCCGCCGGUCAGCUGCCAGAGUGUGGCGCUCCCGGUGGA	chr8:102217355-102217630(-)$1	275	212	252	12.5254
gggaaaggaggagaggCUGCCCCAUCAGCCUCACACUCUG	chr17:80544320-80544571(+)$1	251	108	148	13.3708
uuaguacuuggaugggagCAGUguggcuacuacauaauaa	chr8:28387856-28388121(+)$1	265	142	182	12.9586
CGGGGGCCGAGGGCUAGGCGCGGAGGCCGGCUCACGGCCC	chr2:232573552-232573812(+)$1	260	139	179	16.4121
AGCAGUUUUGCAAGCAGGGAAGUGGGCAGGCAGGGCUGUG	chr19:4034969-4035225(+)$1	256	88	128	13.0564
AUGAAAUGUGUCUGUCGAGGAGGAGCUGGAUGAAAUGUGU	chr5:1326730-1327021(-)$1	291	21	61	14.0616
GAGUUCACCCUCUAAAUCACCACGAUGAUUUAGAGGUAAG	chr2:149639200-149639432(-)$1	232	112	152	16.5638
UUCUCAUUUUCCAAGUCUCCUGUGCCUCCAGAAAGUGGGA	chr16:88959377-88959637(-)$1	260	147	187	16.8236
GGGGGCUUCUGUGGGCAGGCGUCUUGCAGGCCCAUGGUCA	chr22:50034603-50034885(-)$1	282	123	163	11.9498
UGGGCUCUCACCAGGCUCCCUCAGGCCGAGGUCAGCAGCC	chr19:34874736-34874973(+)$1	237	18	58	11.6646
UCGGGCCCUGCUGUCCCCCGGAGGAGGUGGACUGGGUCGG	chr5:1099393-1099669(-)$1	276	155	195	12.4129
AUUGUGGGGUGGGAUGAGUAGGACAACAUAUUUCAGUAAU	chr6:31698293-31698552(-)$1	259	120	160	15.4995
guugcccaggcuggaaugcaauggcgcgaucuuagcuugu	chr19:893459-893690(+)$1	231	174	214	14.9379
GAGGUCCCCAAGGAGCCCAGGACUUGGCCUUGGGGGUCCU	chr9:96432752-96433007(+)$1	255	145	185	13.4240

#DB
.)))))(((((((((.(((......)))))))).)))).(	chr16:1428923-1429172(-)$1	1	120	160	11.6659
((((((..(.(((..((.(....).))..))).)..))))	chr19:34873955-34874213(+)$1	1	9	49	11.8836
((.(((..(.(((.(((((((....)))))))))).).))	chr20:1165115-1165373(-)$1	1	93	133	10.9128
(((((((((...((((((....)))))))))))))))).)	chr3:128214515-128214763(+)$1	1	177	217	10.8747
))))((.((((((..(.((......)).)..)))))).))	chr19:49605894-49606150(+)$1	1	67	107	13.9791
(...((((((..(.((.((......)))).)..)))))))	chr12:133271777-133272098(+)$1	1	83	123	13.0867
..((.(((((((((...((.....))...)))))..))))	chr19:34879665-34879907(+)$1	1	39	79	12.1903
.((((...((((((.(((......)))..))))))...))	chr6:27860378-27860621(-)$1	1	189	229	15.4384
(((((((....(((((.((......)))))))....))))	chr19:4036310-4036585(+)$1	1	81	121	15.1078
((...(((....((.(.((.....)).).)).)))..)))	chr3:128211661-128211906(+)$1	1	126	166	12.9821
(((((.(((....((..(((....)))..))...))).))	chr1:47696975-47697237(-)$1	1	164	204	12.4529
(((.(((((((.((((.((......))..)))).))))))	chr16:88960010-88960294(-)$1	1	78	118	15.9556
((((((.....(((((((((....)))))))))...))))	chr7:140086471-140086718(-)$1	1	85	125	11.5224
.(((((((...(((...............)))....))))	chrM:6473-6699(+)$1	1	1	41	10.6053
((.....(((((.(((.((......))))))))))....)	chr13:92000043-92000285(+)$1	1	125	165	14.3788
(((.(((((...(((.........)))....)))))))))	chr13:114755449-114755716(-)$1	1	48	88	11.1653
.(((((.(..((((((.(((......))))))))).).))	chr19:34883298-34883523(+)$1	1	92	132	14.3426
((....(((.....(.(((...))).)..))))))))).)	chr8:1792434-1792707(+)$1	1	80	120	11.2361
((((.((..(((((.((((......)))).))))).)).)	chr9:98667218-98667466(+)$1	1	109	149	12.3501
(((((((((.(((..((((......))))))).)))))))	chr1:245026573-245026813(-)$1	1	188	228	15.3400
((((((((..((((.(.((......)).).)))).)))))	chr6:170707847-170708101(+)$1	1	205	245	16.9497
((((((((.((((((((..((....))..)))))).))..	chr22:49980973-49981242(-)$1	1	42	82	10.7648
..(.(((((.(((..(.(((.....))).)..))).))))	chr16:89041012-89041286(-)$1	1	135	175	12.8922
...(((.(((((....(((.....)))...))))))))..	chr11:65350554-65350798(+)$1	1	138	178	13.6084
...(((.(((((((...((......))..))))))).)))	chrX:41151984-41152225(+)$1	1	153	193	14.4957
(.((((.(((((((..(((......)))))))))).))))	chr19:4034441-4034672(+)$1	1	144	184	15.6671
(((.(((((((((.((((......))))))))))))).))	chr1:46767588-46767829(-)$1	1	86	126	14.2455
.(((((.((((.((.(((......)))..)).)))).)))	chrM:14222-14444(-)$1	1	70	110	14.2776
..((((.(((((..((((......))))..))))).))))	chr4:53578780-53579010(+)$1	1	16	56	13.3743
((((((((.(...(((.(.....).)))...).)))))))	chr2:55249902-55250146(-)$1	1	62	102	14.9196
(....(((.(.(((...((......))..))).).)))..	chr5:649830-650143(+)$1	1	162	202	17.2176
((((((.....((((((..(......)..))))))..)))	chr8:1780273-1780564(+)$1	1	101	141	12.8953
.(((((.((((.((.(((......)))..)).)))).)))	chrM:14252-14494(-)$1	1	120	160	14.2776
((((.((..(((((.((((......)))).))))).)).)	chr6:153741507-153741734(+)$1	1	106	146	12.9111
..(((....((((((..(........)..))))))..)))	chr10:70514845-70515096(+)$1	1	15	55	11.0735
(((((((((((...(((((......))))).)))).))))	chr3:195502102-195502353(-)$1	1	130	170	13.9081
((.(((....((((((.(((....)))...)))))).)))	chr16:89038324-89038603(-)$1	1	228	268	12.9699
((((((((((((...(.((.....)).)....))))))..	chr19:47731985-47732272(-)$1	1	216	256	12.1668
)(((((((...(((...............)))....))))	chr14:32953278-32953517(-)$1	1	81	121	11.4735
(.((((.((((.((.(.((......))))).)))).))))	chr6:157734750-157734995(-)$1	1	31	71	14.2598
)((.(((((.((((((.((......))..)))))).))))	chr16:89042792-89043037(-)$1	1	88	128	15.8024
(((.(.(.(....((..((......))..))...).).).	chr16:88586272-88586549(+)$1	1	219	259	17.4165
(.(((..(((((.((((((......))).)))))))))))	chr19:1418385-1418617(+)$1	1	170	210	15.1725
..(((((((..(((.((((.....))))))).))))))).	chr8:102217355-102217630(-)$1	1	212	252	12.5254
.(((..(((((.(((((((......))))))).).)))).	chr17:80544320-80544571(+)$1	1	108	148	13.3708
((((((((((.((((((((......))).)).)))..)))	chr8:28387856-28388121(+)$1	1	142	182	12.9586
(((((((((.(((((.(((......)))))))).))))))	chr2:232573552-232573812(+)$1	1	139	179	16.4121
.((((((((((..((..........))..)))))))))).	chr19:4034969-4035225(+)$1	1	88	128	13.0564
((...((((.((.(((.((......)).))))).))))))	chr5:1326730-1327021(-)$1	1	21	61	14.0616
.(((((..(((((((((((......)))))))))))...)	chr2:149639200-149639432(-)$1	1	112	152	16.5638
(((((((((((..((.(......).))...))))))))))	chr16:88959377-88959637(-)$1	1	147	187	16.8236
((..((.(((((((((..((.....))..)))))....))	chr22:50034603-50034885(-)$1	1	123	163	11.9498
))((((((.(((.((((......))))..))).)).))))	chr19:34874736-34874973(+)$1	1	18	58	11.6646
)).(((((((((((((.((......)).))))..)).)))	chr5:1099393-1099669(-)$1	1	155	195	12.4129
(((.((...(((((((.((......)).))))))).....	chr6:31698293-31698552(-)$1	1	120	160	15.4995
(((((.(((((((((.(((......))).)).))))))).	chr19:893459-893690(+)$1	1	174	214	14.9379
(((((((((((((...(((.....)))))))))))).)))	chr9:96432752-96433007(+)$1	1	145	185	13.4240

#PSSM
d : 0.17	c : 0.14	= : 0.14	# : 0.10	f : 0.07	e : 0.07	g : 0.05	[ : 0.05	b : 0.03	" : 0.03	: : 0.03	! : 0.03	2 : 0.01	h : 0.01	i : 0.01	
= : 0.15	e : 0.14	d : 0.14	c : 0.12	# : 0.08	g : 0.08	f : 0.07	[ : 0.05	" : 0.03	b : 0.03	h : 0.01	i : 0.01	: : 0.01	! : 0.01	
e : 0.15	= : 0.15	d : 0.15	g : 0.08	c : 0.08	" : 0.05	# : 0.05	f : 0.03	[ : 0.03	b : 0.03	h : 0.03	: : 0.03	$ : 0.01	i : 0.01	a : 0.01	! : 0.01	
e : 0.14	= : 0.14	d : 0.14	c : 0.12	[ : 0.12	g : 0.10	" : 0.05	f : 0.03	# : 0.03	h : 0.03	b : 0.01	$ : 0.01	i : 0.01	! : 0.01	
e : 0.19	= : 0.14	g : 0.12	c : 0.10	d : 0.08	f : 0.05	b : 0.05	[ : 0.05	i : 0.05	" : 0.03	# : 0.03	$ : 0.01	a : 0.01	! : 0.01	h : 0.01	
e : 0.15	= : 0.14	g : 0.12	c : 0.10	d : 0.10	b : 0.08	f : 0.05	[ : 0.05	i : 0.05	# : 0.03	! : 0.03	" : 0.01	$ : 0.01	h : 0.01	
[ : 0.17	= : 0.14	g : 0.10	d : 0.07	! : 0.07	e : 0.07	c : 0.07	$ : 0.05	b : 0.05	i : 0.05	f : 0.03	" : 0.03	# : 0.03	a : 0.01	h : 0.01	
d : 0.15	g : 0.14	= : 0.12	e : 0.12	! : 0.08	c : 0.07	f : 0.05	# : 0.05	i : 0.05	" : 0.03	$ : 0.03	a : 0.01	[ : 0.01	h : 0.01	b : 0.01	
d : 0.15	e : 0.12	g : 0.10	= : 0.08	f : 0.07	# : 0.07	! : 0.07	[ : 0.07	a : 0.05	" : 0.05	i : 0.05	c : 0.03	$ : 0.03	h : 0.01	
d : 0.12	[ : 0.12	e : 0.12	g : 0.10	f : 0.08	# : 0.08	" : 0.07	$ : 0.05	! : 0.05	= : 0.05	i : 0.03	a : 0.03	b : 0.01	h : 0.01	c : 0.01	
e : 0.15	f : 0.12	d : 0.10	c : 0.08	" : 0.08	g : 0.08	# : 0.07	$ : 0.05	b : 0.05	= : 0.05	! : 0.03	i : 0.03	[ : 0.03	a : 0.01	
e : 0.19	c : 0.17	f : 0.15	[ : 0.08	" : 0.07	g : 0.07	! : 0.05	# : 0.05	i : 0.05	b : 0.03	$ : 0.01	d : 0.01	= : 0.01	
c : 0.17	f : 0.15	e : 0.12	g : 0.08	b : 0.07	[ : 0.07	# : 0.05	d : 0.05	i : 0.05	! : 0.05	" : 0.05	a : 0.01	$ : 0.01	= : 0.01	
c : 0.17	b : 0.15	f : 0.14	e : 0.12	! : 0.08	d : 0.07	g : 0.07	[ : 0.05	" : 0.05	i : 0.01	$ : 0.01	# : 0.01	= : 0.01	
[ : 0.15	f : 0.12	b : 0.12	e : 0.08	! : 0.08	" : 0.08	d : 0.08	c : 0.08	g : 0.05	x : 0.03	i : 0.01	a : 0.01	# : 0.01	= : 0.01	
d : 0.15	c : 0.12	f : 0.10	a : 0.10	[ : 0.08	" : 0.07	! : 0.07	b : 0.05	g : 0.05	e : 0.05	x : 0.03	i : 0.01	r : 0.01	# : 0.01	s : 0.01	= : 0.01	
[ : 0.29	c : 0.21	d : 0.12	! : 0.07	f : 0.05	" : 0.05	g : 0.03	x : 0.03	b : 0.01	i : 0.01	r : 0.01	e : 0.01	s : 0.01	= : 0.01	a : 0.01	
b : 0.29	c : 0.28	d : 0.10	! : 0.05	g : 0.03	x : 0.03	a : 0.03	o : 0.03	[ : 0.01	f : 0.01	i : 0.01	r : 0.01	e : 0.01	s : 0.01	= : 0.01	
b : 0.31	c : 0.22	o : 0.12	d : 0.07	g : 0.03	x : 0.03	! : 0.03	a : 0.01	m : 0.01	i : 0.01	r : 0.01	n : 0.01	q : 0.01	e : 0.01	s : 0.01	= : 0.01	
o : 0.57	n : 0.12	c : 0.07	m : 0.03	x : 0.03	b : 0.03	g : 0.01	i : 0.01	r : 0.01	l : 0.01	a : 0.01	q : 0.01	s : 0.01	
o : 0.61	n : 0.15	m : 0.08	x : 0.03	g : 0.01	r : 0.01	l : 0.01	b : 0.01	q : 0.01	s : 0.01	
o : 0.61	n : 0.15	m : 0.12	x : 0.03	r : 0.01	l : 0.01	q : 0.01	s : 0.01	
o : 0.61	n : 0.15	m : 0.10	x : 0.03	f : 0.01	r : 0.01	c : 0.01	q : 0.01	s : 0.01	
o : 0.57	n : 0.14	m : 0.08	a : 0.05	x : 0.03	f : 0.01	r : 0.01	c : 0.01	q : 0.01	s : 0.01	d : 0.01	
o : 0.49	c : 0.15	d : 0.07	] : 0.05	b : 0.05	m : 0.03	x : 0.03	n : 0.03	f : 0.01	i : 0.01	q : 0.01	s : 0.01	
b : 0.38	c : 0.28	d : 0.12	g : 0.03	x : 0.03	o : 0.03	f : 0.01	i : 0.01	] : 0.01	q : 0.01	e : 0.01	= : 0.01	
b : 0.33	c : 0.29	d : 0.12	a : 0.05	g : 0.03	] : 0.03	x : 0.03	f : 0.01	3 : 0.01	i : 0.01	e : 0.01	= : 0.01	
2 : 0.29	c : 0.17	d : 0.10	] : 0.08	3 : 0.07	a : 0.05	g : 0.03	e : 0.03	i : 0.03	x : 0.03	f : 0.01	b : 0.01	4 : 0.01	= : 0.01	
2 : 0.31	3 : 0.08	] : 0.08	e : 0.07	g : 0.07	c : 0.07	d : 0.07	i : 0.05	= : 0.03	a : 0.03	b : 0.03	x : 0.03	4 : 0.03	
c : 0.19	b : 0.14	e : 0.10	f : 0.10	g : 0.08	] : 0.07	3 : 0.07	= : 0.05	i : 0.05	2 : 0.03	d : 0.03	4 : 0.03	a : 0.01	
e : 0.17	c : 0.17	f : 0.12	b : 0.12	g : 0.08	= : 0.07	d : 0.05	i : 0.05	2 : 0.03	4 : 0.03	] : 0.03	a : 0.01	3 : 0.01	
e : 0.19	c : 0.14	f : 0.14	] : 0.10	g : 0.08	d : 0.08	= : 0.07	i : 0.05	2 : 0.03	3 : 0.03	a : 0.01	4 : 0.01	b : 0.01	
e : 0.19	f : 0.17	] : 0.10	d : 0.10	g : 0.08	c : 0.07	= : 0.07	4 : 0.05	i : 0.05	2 : 0.03	3 : 0.03	b : 0.01	
f : 0.19	e : 0.15	= : 0.08	d : 0.08	g : 0.08	] : 0.07	c : 0.07	a : 0.05	4 : 0.05	3 : 0.05	i : 0.05	b : 0.01	2 : 0.01	
f : 0.19	e : 0.12	d : 0.10	= : 0.10	g : 0.10	c : 0.08	4 : 0.07	i : 0.05	] : 0.05	2 : 0.03	b : 0.03	3 : 0.01	a : 0.01	
] : 0.22	= : 0.12	2 : 0.10	d : 0.08	f : 0.08	4 : 0.08	g : 0.07	c : 0.05	i : 0.05	3 : 0.03	e : 0.03	b : 0.01	> : 0.01	
d : 0.14	= : 0.12	g : 0.10	] : 0.10	f : 0.08	e : 0.08	2 : 0.07	a : 0.05	c : 0.05	b : 0.05	3 : 0.03	4 : 0.03	i : 0.03	> : 0.01	
d : 0.17	= : 0.12	g : 0.12	] : 0.10	e : 0.10	c : 0.10	f : 0.08	b : 0.05	3 : 0.03	4 : 0.03	i : 0.01	h : 0.01	> : 0.01	
d : 0.19	e : 0.14	g : 0.12	c : 0.10	= : 0.10	] : 0.07	f : 0.05	2 : 0.05	4 : 0.03	: : 0.01	b : 0.01	i : 0.01	a : 0.01	h : 0.01	3 : 0.01	> : 0.01	
d : 0.21	e : 0.15	c : 0.10	g : 0.08	= : 0.08	f : 0.07	2 : 0.07	h : 0.05	b : 0.03	4 : 0.03	] : 0.03	i : 0.01	6 : 0.01	> : 0.01	

#score	775.873924579963
#seq	57
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_UTR_m3_run1.txt

#BEAR
ii[ffffffaqqqqqqqqa]fffff	chr15:44580872-44581121(+)$1	249	128	153	15.5318
hhh[ffffffqqqqqqqqffffffh	chr19:38865317-38865565(+)$1	248	68	93	14.8775
fff[ffffffqqqqqqqqfffffff	chr2:10443015-10443276(+)$1	261	139	164	15.0176
dd"""eeeeeqqqqqqqqeeeee33	chr5:179248512-179248793(+)$1	281	41	66	16.2021
=======[bbqqqqqqqqbb]====	chr3:20081765-20082043(+)$1	278	92	117	16.6815
ccccc[a[bbqqqqqqqqbb]a]cc	chr8:98787973-98788274(+)$1	301	215	240	15.8156
cccbb[ddddqqqqqqqqdddd]bb	chr7:100464928-100465180(+)$1	252	37	62	14.6511
c[eeeee[bbqqqqqqqqbb]eeee	chr12:96252639-96252921(+)$1	282	31	56	15.2857
bb[gggggggqqqqqqqqggggggg	chr4:113066611-113066906(+)$1	295	52	77	16.5240
bb!!ffffffqqqqqqqqffffff2	chr19:10505878-10506128(-)$1	250	55	80	15.4120
dd:gggggggqqqqqqqqggggggg	chr16:88851371-88851691(-)$1	320	80	105	15.2181
a!!ccc[cccqqqqqqqqccc22cc	chr1:47697161-47697430(-)$1	269	209	234	16.7073
bb[gggggggqqqqqqqqggggggg	chr4:120221569-120221820(-)$1	251	72	97	16.5240
!!eeeee[bbqqqqqqqqbbeeeee	chr19:18547932-18548225(-)$1	293	109	134	15.2645
iiiiii[cccqqqqqqqqccciiii	chr5:218342-218745(+)$1	403	82	107	17.1380
cc!!ffffffqqqqqqqqffffff2	chr9:114659064-114659317(+)$1	253	212	237	15.6284
bccc[eeeeeqqqqqqqqeeeee]c	chr1:202927217-202927471(-)$1	254	213	238	16.1119
b!!gggggggqqqqqqqqggggggg	chr16:9185412-9185656(+)$1	244	5	30	16.8794
[bb"""ddddqqqqqqqqdddd333	chr3:129034876-129035146(-)$1	270	156	181	15.5429
b!!a!!ddddqqqqqqqqdddd22a	chr22:24129157-24129449(+)$1	292	246	271	15.7441
a[ccc!!cccqqqqqqqqccc22cc	chr16:89787836-89788089(+)$1	253	127	152	16.6481
eeeeffffffqqqqqqqqffffffG	chr9:140446284-140446524(+)$1	240	176	201	14.2710
eeee!!ddddqqqqqqqqdddd]ee	chr7:100027147-100027450(+)$1	303	35	60	14.8874
bb[a"""cccqqqqqqqqccc]a]b	chr2:217365959-217366165(+)$1	206	167	192	16.6195
[eeeee[cccqqqqqqqqccc]eee	chr12:123756013-123756383(-)$1	370	294	319	15.9932
g[bb[a[cccqqqqqqqqccc]abb	chr18:9102614-9102895(+)$1	281	233	258	16.1910
fff!!eeeeeqqqqqqqqeeeeeff	chr3:52740080-52740371(+)$1	291	13	38	15.7399
bb[ccc[cccqqqqqqqqccc]ccc	chr10:97050509-97050833(-)$1	324	238	263	16.6036
==========qqqqqqqq=======	chr17:61850676-61850926(-)$1	250	199	224	17.1980
cccddddcccqqqqqqqqccc]ddd	chr19:4400376-4400616(-)$1	240	42	67	15.2326
==========qqqqqqqq=======	chr14:102228048-102228333(+)$1	285	121	146	17.1980
gggggg!!bbqqqqqqqqbb]gggg	chr16:12009507-12009808(-)$1	301	93	118	16.2858
ggggg[ddddqqqqqqqqddddggg	chr22:32340568-32340858(+)$1	290	200	225	15.8123
b[ccc[a[bbqqqqqqqqbb]a]cc	chr9:100745631-100745894(+)$1	263	60	85	15.9507
a!!a[eeeeeqqqqqqqqeeeee]a	chr1:16010923-16011168(+)$1	245	192	217	16.5973
========bbqqqqqqqqbb22===	chr22:36925026-36925318(-)$1	292	17	42	16.1997
FFFccc[cccqqqqqqqqccc]ccc	chr12:6643632-6643835(+)$1	203	11	36	15.0616
d[bb[eeeeeqqqqqqqqeeeeebb	chr17:79849556-79849811(+)$1	255	130	155	15.3121
ggggggg[bbqqqqqqqqbb]gggg	chr8:103424373-103424663(-)$1	290	248	273	16.2196
dddd[eeeeeqqqqqqqqeeeee33	chr3:50367757-50368055(-)$1	298	153	178	15.6313
hhhhhh[cccqqqqqqqqccc]hhh	chr3:142838635-142838982(+)$1	347	77	102	15.3166
###gggggggqqqqqqqqggggggg	chr2:236403165-236403447(+)$1	282	188	213	16.7078
c:dddd[cccqqqqqqqqccc]ddd	chr11:61583470-61583749(-)$1	279	76	101	14.4501
g$$$$$ddddqqqqqqqqdddd333	chr19:4400231-4400524(-)$1	293	68	93	15.0272
iiiiieeeeeqqqqqqqqeeeee::	chr22:19109656-19109991(-)$1	335	164	189	14.3432
ffffff[cccqqqqqqqqccc]fff	chr16:89787495-89787778(+)$1	283	45	70	15.9527
$$$$$eeeeeqqqqqqqqeeeee33	chr3:180707287-180707604(-)$1	317	49	74	15.5499
bb"""eeeeeqqqqqqqqeeeee22	chr8:74884211-74884476(-)$1	265	189	214	15.9021
e[ccc!!cccqqqqqqqqccc]ccc	chr17:49238420-49238700(+)$1	280	138	163	16.7998
========[arrrrrrrrra=====	chr7:22852621-22852892(-)$1	271	11	36	10.4400
"ggggggg[aqqqqqqqqa]ggggg	chr19:49994993-49995280(+)$1	287	200	225	16.4689
c[bb"""cccqqqqqqqqccc333b	chr16:84733509-84733745(+)$1	236	161	186	16.5444
cc[gggggggqqqqqqqqggggggg	chr1:33282717-33282993(-)$1	276	29	54	16.7404
!!a!!eeeeeqqqqqqqqeeeee22	chr12:56510461-56510675(+)$1	214	3	28	16.2795
gggbb[a!!aqqqqqqqqa22a]bb	chr7:91763516-91763801(-)$1	285	209	234	14.8118

#otherMatches

#Seq PSSM
GUUCAAAGCCUCCGGAACGCGUUUU	chr15:44580872-44581121(+)$1	249	128	153	15.5318
CGGCGCUGCCGUAAAUCAGGCGGUC	chr19:38865317-38865565(+)$1	248	68	93	14.8775
AGCUGCGGGCGCACGGAGGCCCGCG	chr2:10443015-10443276(+)$1	261	139	164	15.0176
GUGGGUUCAGAUAAUGCCCUGGAGG	chr5:179248512-179248793(+)$1	281	41	66	16.2021
gagggcguggggggagggUCUCGCU	chr3:20081765-20082043(+)$1	278	92	117	16.6815
GACGCUCCUGAAAACUUGCGCGCGC	chr8:98787973-98788274(+)$1	301	215	240	15.8156
UGGUCGUCCCCAAAAUUAGGGAGGA	chr7:100464928-100465180(+)$1	252	37	62	14.6511
UCUUUGCGUCCAAUCACAGAGGCAG	chr12:96252639-96252921(+)$1	282	31	56	15.2857
GCGGCGGCGCUGCCUGGUGCGUCGC	chr4:113066611-113066906(+)$1	295	52	77	16.5240
GGCAGGCCCUUUGCCUCCAGGGCCC	chr19:10505878-10506128(-)$1	250	55	80	15.4120
CCAGCUCGGCCCCAGUGAGCCGAGC	chr16:88851371-88851691(-)$1	320	80	105	15.2181
UUUGACUGAUUUCGUUGUGUCCUGU	chr1:47697161-47697430(-)$1	269	209	234	16.7073
AGUCCGGGAACUUAAGCAUUUUCGG	chr4:120221569-120221820(-)$1	251	72	97	16.5240
AGUCUUACAGGGGCGGAGCUUAAGG	chr19:18547932-18548225(-)$1	293	109	134	15.2645
CAGUCUGCGCAGGGACUGGCGGGAC	chr5:218342-218745(+)$1	403	82	107	17.1380
GCGAGCGCGCCGAAGACAGCGCGCA	chr9:114659064-114659317(+)$1	253	212	237	15.6284
CCCGGGGGCCCCGACCCAGGCCUGC	chr1:202927217-202927471(-)$1	254	213	238	16.1119
UUCUCCUGUCAGCAUGUGGGCGGGG	chr16:9185412-9185656(+)$1	244	5	30	16.8794
cggucucugacccccaacucggucc	chr3:129034876-129035146(-)$1	270	156	181	15.5429
GUUCCAGCUGGAGGACGACGGCGAG	chr22:24129157-24129449(+)$1	292	246	271	15.7441
GCGCCGAGCGGAGCCUAACGCCGGG	chr16:89787836-89788089(+)$1	253	127	152	16.6481
gcgcggccaggggcggggcuggccg	chr9:140446284-140446524(+)$1	240	176	201	14.2710
ACAUAGCUGCGCAGGGAAGUAGGGU	chr7:100027147-100027450(+)$1	303	35	60	14.8874
GACGCUCCUCUACUCUUUGAGACAU	chr2:217365959-217366165(+)$1	206	167	192	16.6195
CGCCCCAAGCGCCGCCAAGUUGGGG	chr12:123756013-123756383(-)$1	370	294	319	15.9932
CGUGUCUCCCUUAGUUUUGGGCGCA	chr18:9102614-9102895(+)$1	281	233	258	16.1910
CCCGUCGGAGACUUCCGCUUCCGGG	chr3:52740080-52740371(+)$1	291	13	38	15.7399
GCCUCUCGCCAUUUCCCGGGUAAGA	chr10:97050509-97050833(-)$1	324	238	263	16.6036
GCCGAGCGGUGACUCCGAGUUGCUU	chr17:61850676-61850926(-)$1	250	199	224	17.1980
gcCGGCACCGGAAGCGUGCGGUUGC	chr19:4400376-4400616(-)$1	240	42	67	15.2326
cugcugcugcgggggcaggcggcgg	chr14:102228048-102228333(+)$1	285	121	146	17.1980
CCGGGGAUCUUUGUCGCUAGCUCCC	chr16:12009507-12009808(-)$1	301	93	118	16.2858
CGGAGCGCUACGACGACAUGGCCUC	chr22:32340568-32340858(+)$1	290	200	225	15.8123
CACGCCGCCCGCCACCCAGGACCGC	chr9:100745631-100745894(+)$1	263	60	85	15.9507
GAGCGCGGCCUCCCUCCCGGCCGGG	chr1:16010923-16011168(+)$1	245	192	217	16.5973
UCUUCCGCCCAACCCAGAGGAAGCG	chr22:36925026-36925318(-)$1	292	17	42	16.1997
CCCCGGUUUCUAUAAAUUGAGCCCG	chr12:6643632-6643835(+)$1	203	11	36	15.0616
CGGCGCUGCCAACGGAAGGGCGGGU	chr17:79849556-79849811(+)$1	255	130	155	15.3121
CCAGCUCAAUGACAGGUAAUAGGGC	chr8:103424373-103424663(-)$1	290	248	273	16.2196
CUGUGCUGGGGGAAUGAGCCCAGAG	chr3:50367757-50368055(-)$1	298	153	178	15.6313
CGGGGUCUUUCUUUGCUUAAAUACC	chr3:142838635-142838982(+)$1	347	77	102	15.3166
CAACUCGGCUGCCAUCCGGGCCGAG	chr2:236403165-236403447(+)$1	282	188	213	16.7078
CAGGCCGCCUGGGGAGGGAGGGGGU	chr11:61583470-61583749(-)$1	279	76	101	14.4501
cggggacugcugaggcgcgcagagg	chr19:4400231-4400524(-)$1	293	68	93	15.0272
UCGCCCAGGUUCAGCUCCGCCUGAC	chr22:19109656-19109991(-)$1	335	164	189	14.3432
GUUGCCAUGGGCGUCUAACCGCGGC	chr16:89787495-89787778(+)$1	283	45	70	15.9527
UUUUCCGGCCUAGUUUGCGGCUGCU	chr3:180707287-180707604(-)$1	317	49	74	15.5499
CGGAGCUCCGGGUAAGGGUGGAGGG	chr8:74884211-74884476(-)$1	265	189	214	15.9021
CAUGCUCGGGGAGACCAACCCUGCA	chr17:49238420-49238700(+)$1	280	138	163	16.7998
UUUCUAGGUCUUAGGUUAUGUCUAG	chr7:22852621-22852892(-)$1	271	11	36	10.4400
AGCUGGGAGCAAGGAAAGGGUCUUA	chr19:49994993-49995280(+)$1	287	200	225	16.4689
GCGGAGUCCCAAUGAAACGGGCAGC	chr16:84733509-84733745(+)$1	236	161	186	16.5444
AGCCCAGCUGAUGCAACCUGGCUGG	chr1:33282717-33282993(-)$1	276	29	54	16.7404
CGUUGGGAUUCCGUGUACAAUCCAU	chr12:56510461-56510675(+)$1	214	3	28	16.2795
CGGCAACCUCUUGUCCAUGCUGCUG	chr7:91763516-91763801(-)$1	285	209	234	14.8118

#DB
((.(((((((........).)))))	chr15:44580872-44581121(+)$1	1	128	153	15.5318
(((.((((((........)))))))	chr19:38865317-38865565(+)$1	1	68	93	14.8775
(((.((((((........)))))))	chr2:10443015-10443276(+)$1	1	139	164	15.0176
((...(((((........)))))..	chr5:179248512-179248793(+)$1	1	41	66	16.2021
(((((((.((........)).))))	chr3:20081765-20082043(+)$1	1	92	117	16.6815
(((((.(.((........)).).))	chr8:98787973-98788274(+)$1	1	215	240	15.8156
)))((.((((........)))).))	chr7:100464928-100465180(+)$1	1	37	62	14.6511
(.(((((.((........)).))))	chr12:96252639-96252921(+)$1	1	31	56	15.2857
((.(((((((........)))))))	chr4:113066611-113066906(+)$1	1	52	77	16.5240
((..((((((........)))))).	chr19:10505878-10506128(-)$1	1	55	80	15.4120
)).(((((((........)))))))	chr16:88851371-88851691(-)$1	1	80	105	15.2181
(..(((.(((........)))..))	chr1:47697161-47697430(-)$1	1	209	234	16.7073
((.(((((((........)))))))	chr4:120221569-120221820(-)$1	1	72	97	16.5240
..(((((.((........)))))))	chr19:18547932-18548225(-)$1	1	109	134	15.2645
((((((.(((........)))))))	chr5:218342-218745(+)$1	1	82	107	17.1380
((..((((((........)))))).	chr9:114659064-114659317(+)$1	1	212	237	15.6284
((((.(((((........))))).)	chr1:202927217-202927471(-)$1	1	213	238	16.1119
(..(((((((........)))))))	chr16:9185412-9185656(+)$1	1	5	30	16.8794
.((...((((........))))...	chr3:129034876-129035146(-)$1	1	156	181	15.5429
(..(..((((........))))..)	chr22:24129157-24129449(+)$1	1	246	271	15.7441
(.(((..(((........)))..))	chr16:89787836-89788089(+)$1	1	127	152	16.6481
))))((((((........)))))))	chr9:140446284-140446524(+)$1	1	176	201	14.2710
((((..((((........)))).))	chr7:100027147-100027450(+)$1	1	35	60	14.8874
((.(...(((........))).).)	chr2:217365959-217366165(+)$1	1	167	192	16.6195
.(((((.(((........))).)))	chr12:123756013-123756383(-)$1	1	294	319	15.9932
(.((.(.(((........))).)))	chr18:9102614-9102895(+)$1	1	233	258	16.1910
(((..(((((........)))))))	chr3:52740080-52740371(+)$1	1	13	38	15.7399
((.(((.(((........))).)))	chr10:97050509-97050833(-)$1	1	238	263	16.6036
((((((((((........)))))))	chr17:61850676-61850926(-)$1	1	199	224	17.1980
)))(((((((........))).)))	chr19:4400376-4400616(-)$1	1	42	67	15.2326
((((((((((........)))))))	chr14:102228048-102228333(+)$1	1	121	146	17.1980
((((((..((........)).))))	chr16:12009507-12009808(-)$1	1	93	118	16.2858
(((((.((((........)))))))	chr22:32340568-32340858(+)$1	1	200	225	15.8123
(.(((.(.((........)).).))	chr9:100745631-100745894(+)$1	1	60	85	15.9507
(..(.(((((........))))).)	chr1:16010923-16011168(+)$1	1	192	217	16.5973
((((((((((........))..)))	chr22:36925026-36925318(-)$1	1	17	42	16.1997
((((((.(((........))).)))	chr12:6643632-6643835(+)$1	1	11	36	15.0616
(.((.(((((........)))))))	chr17:79849556-79849811(+)$1	1	130	155	15.3121
(((((((.((........)).))))	chr8:103424373-103424663(-)$1	1	248	273	16.2196
((((.(((((........)))))..	chr3:50367757-50368055(-)$1	1	153	178	15.6313
((((((.(((........))).)))	chr3:142838635-142838982(+)$1	1	77	102	15.3166
...(((((((........)))))))	chr2:236403165-236403447(+)$1	1	188	213	16.7078
).((((.(((........))).)))	chr11:61583470-61583749(-)$1	1	76	101	14.4501
(.....((((........))))...	chr19:4400231-4400524(-)$1	1	68	93	15.0272
)))))(((((........)))))..	chr22:19109656-19109991(-)$1	1	164	189	14.3432
((((((.(((........))).)))	chr16:89787495-89787778(+)$1	1	45	70	15.9527
.....(((((........)))))..	chr3:180707287-180707604(-)$1	1	49	74	15.5499
((...(((((........)))))..	chr8:74884211-74884476(-)$1	1	189	214	15.9021
(.(((..(((........))).)))	chr17:49238420-49238700(+)$1	1	138	163	16.7998
((((((((.(.........))))))	chr7:22852621-22852892(-)$1	1	11	36	10.4400
.(((((((.(........).)))))	chr19:49994993-49995280(+)$1	1	200	225	16.4689
(.((...(((........)))...)	chr16:84733509-84733745(+)$1	1	161	186	16.5444
((.(((((((........)))))))	chr1:33282717-33282993(-)$1	1	29	54	16.7404
..(..(((((........)))))..	chr12:56510461-56510675(+)$1	1	3	28	16.2795
(((((.(..(........)..).))	chr7:91763516-91763801(-)$1	1	209	234	14.8118

#PSSM
b : 0.18	c : 0.14	g : 0.10	= : 0.09	d : 0.07	i : 0.05	f : 0.05	a : 0.05	e : 0.05	h : 0.03	! : 0.03	[ : 0.03	F : 0.01	# : 0.01	$ : 0.01	" : 0.01	
[ : 0.12	b : 0.12	c : 0.10	! : 0.10	= : 0.09	g : 0.09	i : 0.05	f : 0.05	d : 0.05	e : 0.05	h : 0.03	$ : 0.03	F : 0.01	# : 0.01	: : 0.01	
c : 0.12	[ : 0.10	! : 0.10	= : 0.09	e : 0.09	g : 0.09	b : 0.07	f : 0.05	h : 0.03	" : 0.03	i : 0.03	d : 0.03	$ : 0.03	: : 0.01	F : 0.01	# : 0.01	a : 0.01	
g : 0.18	c : 0.14	= : 0.09	b : 0.09	e : 0.09	! : 0.07	" : 0.05	a : 0.05	d : 0.05	f : 0.03	[ : 0.03	i : 0.03	$ : 0.03	h : 0.01	
g : 0.18	f : 0.12	c : 0.12	" : 0.09	= : 0.09	[ : 0.09	! : 0.07	e : 0.05	b : 0.03	i : 0.03	d : 0.03	$ : 0.03	h : 0.01	
e : 0.23	g : 0.16	f : 0.12	= : 0.09	[ : 0.09	! : 0.07	c : 0.05	" : 0.05	d : 0.03	i : 0.01	a : 0.01	h : 0.01	$ : 0.01	
e : 0.21	[ : 0.16	g : 0.14	d : 0.12	f : 0.10	= : 0.09	a : 0.05	! : 0.05	" : 0.03	
c : 0.25	e : 0.18	g : 0.12	f : 0.10	[ : 0.10	d : 0.10	= : 0.07	! : 0.03	
c : 0.25	e : 0.18	b : 0.14	f : 0.10	d : 0.10	g : 0.10	= : 0.03	[ : 0.03	! : 0.01	
c : 0.25	e : 0.18	b : 0.14	d : 0.10	g : 0.10	f : 0.09	a : 0.07	= : 0.03	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
c : 0.25	e : 0.18	b : 0.14	d : 0.10	g : 0.10	f : 0.09	a : 0.05	= : 0.03	r : 0.01	
c : 0.25	e : 0.18	b : 0.14	d : 0.10	g : 0.10	f : 0.09	] : 0.03	= : 0.03	a : 0.01	2 : 0.01	
c : 0.25	e : 0.20	g : 0.12	f : 0.10	] : 0.10	d : 0.10	= : 0.05	2 : 0.03	
e : 0.21	] : 0.18	g : 0.16	f : 0.10	d : 0.10	= : 0.07	a : 0.05	2 : 0.05	i : 0.01	3 : 0.01	
e : 0.23	g : 0.18	f : 0.12	= : 0.09	] : 0.09	2 : 0.05	3 : 0.05	c : 0.05	a : 0.03	d : 0.03	i : 0.01	h : 0.01	
g : 0.18	f : 0.14	c : 0.12	3 : 0.10	= : 0.09	b : 0.07	e : 0.07	] : 0.05	2 : 0.05	d : 0.03	i : 0.01	h : 0.01	: : 0.01	
g : 0.18	c : 0.14	b : 0.10	3 : 0.09	= : 0.09	f : 0.07	e : 0.07	2 : 0.07	h : 0.03	a : 0.03	d : 0.03	i : 0.01	G : 0.01	: : 0.01	

#score	867.747216515589
#seq	55
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_UTR_m2_run1.txt

#BEAR
ddd[ffffff[cccmmmmccc]ffffffdd	chr16:1726605-1726925(+)$1	320	266	296	11.2370
[bbccc[gggggggmmmmggggggg]ccc2	chr19:54970219-54970463(+)$1	244	54	84	12.3624
fffffiiiiiiiiimmmmiiiiiiiii333	chr11:66408200-66408465(+)$1	265	197	227	13.3089
eeee"""gggggggmmmmggggggg]eeee	chr3:176913987-176914233(-)$1	246	85	115	12.9885
eeee[eeeee[cccmmmmccc]eeeee]ee	chr7:923745-924047(+)$1	302	98	128	12.3976
ggggggg"""ddddmmmmdddd4444gggg	chr16:48399219-48399570(-)$1	351	229	259	10.6544
ee"""a[gggggggmmmmggggggga]eee	chr11:57531324-57531577(+)$1	253	139	169	12.7671
b[ggggggg[ddddllldddd]ggggggg3	chr19:54970712-54970936(+)$1	224	171	201	9.6541
==========[cccmmmmccc]========	chr17:79879026-79879313(-)$1	287	253	283	15.0107
!!dddd[eeeeebbmmmmbb]eeeee]ddd	chr16:23478677-23478897(-)$1	220	26	56	11.2411
b[ccc[bbbb[cccmmmmccc]bb]bb]cc	chr20:361976-362247(+)$1	271	156	186	10.6976
eee[===========lll===========]	chr11:3011266-3011513(-)$1	247	123	153	12.9438
eeeee[iiiiiiiiillliiiiiiiii22e	chr14:39736435-39736664(+)$1	229	35	65	11.3905
:iiiiiiiii[ccclllccciiiiiiiii:	chr19:44342009-44342393(+)$1	384	176	206	10.2605
bb[a[eeeee!!bbmmmmbbeeeee]a]bb	chr6:168364548-168364809(+)$1	261	86	116	10.8898
dddd!!ccc[ddddmmmmddddccc4444d	chr4:152020806-152021122(+)$1	316	120	150	11.0711
dddd[ccc[a!!bbmmmmbb22a]ccc]dd	chr18:3011723-3012040(-)$1	317	150	180	11.9502
d[cccccc[eeeeemmmmeeeee]ccc]cc	chr11:9286484-9286849(-)$1	365	220	250	10.8883
c!!a"""gggggggmmmmggggggga22cc	chr17:20905179-20905417(-)$1	238	98	128	13.0052
d[dddd[gggggggmmmmggggggg333dd	chr5:663106-663409(+)$1	303	112	142	13.1613
eeeee[dddd!!bbmmmmbb]dddd]eeee	chr14:23990136-23990383(+)$1	247	207	237	11.3633
ffbba[eeeee[bbmmmmbb]eeeee]a33	chr17:45912170-45912394(+)$1	224	35	65	10.9929
cc[bb[dddd[cccmmmmcccdddd]bb]c	chr21:44269749-44270001(-)$1	252	122	152	10.9289
[cccggggggg[bbmmmmbb]ggggggg]c	chr6:74230385-74230644(-)$1	259	124	154	13.1340
]ccc==========oooooo==========	chr2:74330263-74330523(+)$1	260	109	139	11.8163
ggggeeeee!!cccmmmmccc22eeeee44	chr3:5258624-5258879(+)$1	255	16	46	12.1815
!!dddd[gggggggmmmmggggggg]dddd	chr19:54970267-54970495(+)$1	228	6	36	12.7852
dddd!!dddd[cccmmmmccc]dddd4444	chr2:239359822-239360057(+)$1	235	67	97	12.2352
ddd[==========mmmm==========dd	chr11:3009206-3009471(-)$1	265	19	49	14.4603
"ccc[ccc[eeeeemmmmeeeee22ccc]c	chr1:204522534-204522803(+)$1	269	62	92	10.4346
c[dddddddd[cccmmmmccc22dddd]dd	chr12:70637739-70638047(+)$1	308	142	172	11.4932
Giiiiiiiii!!bblllbb333iiiiiiii	chr7:24613722-24613985(+)$1	263	94	124	10.8548
!!dddd[ddddcccmmmmccc]dddd]ddd	chr8:42396004-42396226(-)$1	222	164	194	11.5275
hhhh==========mmmm==========::	chr17:62501828-62502091(-)$1	263	126	156	12.1702
eeeee!!dddd[bbmmmmbb]dddd]eeee	chr12:104682378-104682651(+)$1	273	154	184	11.2132
ccc[ccc[ffffffmmmmffffff]ccc]c	chr19:16038387-16038637(-)$1	250	113	143	10.5000
ee[ccc[bb!!cccmmmmccc22bb]ccc]	chr2:239360154-239360406(+)$1	252	36	66	11.6966
$$$===========mmmm===========3	chr8:146279529-146279838(+)$1	309	210	240	14.2699
[ccc!!gggggggnnnnnggggggg22ccc	chr11:111608947-111609206(-)$1	259	127	157	9.6942
dd!!ffffff[cccmmmmccc333ffffff	chr1:6259213-6259574(-)$1	361	7	37	11.3330
a[bb!!ccc[acccmmmmccc]a]ccc]bb	chr1:8852525-8852783(-)$1	258	167	197	12.0527
=============oooooo===========	chr12:77158269-77158555(+)$1	286	194	224	12.3691
cc:===========nnnnn===========	chr5:138630413-138630674(+)$1	261	98	128	10.4752
c[eeeee[a[ddddmmmmdddd]aeeeeec	chr2:11721003-11721259(+)$1	256	211	241	10.5404
:dddd!!gggggggmmmmggggggg22ddd	chr8:128959193-128959473(+)$1	280	145	175	11.5364
""eeeee[a"""bbmmmmbb]a]eeeee]d	chr12:133351288-133351542(-)$1	254	165	195	11.8466
eeee[dddd!!cccmmmmccc22dddd22e	chr1:90308456-90308727(+)$1	271	138	168	11.5284
""eeeeegggggggmmmmggggggg]eeee	chr4:52774982-52775246(+)$1	264	209	239	12.6811
gggg[gggggggbbmmmmbb]ggggggg]g	chr19:10766056-10766369(+)$1	313	9	39	13.1661
============bbmmmmbb]=========	chr12:121137195-121137443(+)$1	248	70	100	14.5684

#otherMatches

#Seq PSSM
GGGUGUUGGCGGCGUUUCCGCGGUUGGCCU	chr16:1726605-1726925(+)$1	320	266	296	11.2370
GGUGGGGAUGAGUUGCUUGACUCAUGUUUA	chr19:54970219-54970463(+)$1	244	54	84	12.3624
caaaggaaaugcuuguuagagcauuuugga	chr11:66408200-66408465(+)$1	265	197	227	13.3089
AAAGUUAUUGCCAGCUUCCUGGUAAGUUUU	chr3:176913987-176914233(-)$1	246	85	115	12.9885
CGGUUCUGCCCGUGGCCCCACUGGCGGCAU	chr7:923745-924047(+)$1	302	98	128	12.3976
CUUGUUCACAUGUUUACCAGCGGCCAGGAC	chr16:48399219-48399570(-)$1	351	229	259	10.6544
GAUAAGAUGGAAGAUUUGUCUUUUACCUCA	chr11:57531324-57531577(+)$1	253	139	169	12.7671
GAGACUCAUUCUGGAAUCUAGUGUGGGUCA	chr19:54970712-54970936(+)$1	224	171	201	9.6541
UGAGCCUUGGCUACAUCUGUGUCUAGGGCU	chr17:79879026-79879313(-)$1	287	253	283	15.0107
GCGUUACUUUUGCUGUCUAGUCAGGACUAA	chr16:23478677-23478897(-)$1	220	26	56	11.2411
GGUCUGUUUUGCGUGAGUGCGGGAUAGGGG	chr20:361976-362247(+)$1	271	156	186	10.6976
UAUUUGUGCCUAUAUGUCAUAUAGGCACAU	chr11:3011266-3011513(-)$1	247	123	153	12.9438
GGGCAGCGUAGGCCUGUGAGGCCUGCGGGU	chr14:39736435-39736664(+)$1	229	35	65	11.3905
ugucugugaugcuuuugaagauuacaggcc	chr19:44342009-44342393(+)$1	384	176	206	10.2605
ACAGUGCCCAUUGCUAUAGCUGGGCCCAGU	chr6:168364548-168364809(+)$1	261	86	116	10.8898
UCCUAGAUCGCGGCGUAGGCCGGAUGGCGA	chr4:152020806-152021122(+)$1	316	120	150	11.0711
CAGUGCAGGGGAUGGAGACAGGUGCUGGGC	chr18:3011723-3012040(-)$1	317	150	180	11.9502
CGGCCCCGGCGCCAUGAGUGGCGGCGGCGG	chr11:9286484-9286849(-)$1	365	220	250	10.8883
UCGCGAAGCUGGAGUGGCCUCUGGUGGAGC	chr17:20905179-20905417(-)$1	238	98	128	13.0052
UGGCCGCUCGUCUGUGAUCGGGCGAUUCCG	chr5:663106-663409(+)$1	303	112	142	13.1613
CUUUGAGAAUAAGUUACUGCAGUUCCCAGG	chr14:23990136-23990383(+)$1	247	207	237	11.3633
aagaagaggaaacuaugaagauuccuguac	chr17:45912170-45912394(+)$1	224	35	65	10.9929
GGUGGUGGCGGCAGCUGUCUGUGUUUCUCC	chr21:44269749-44270001(-)$1	252	122	152	10.9289
UGGGGCCGCCGCGUGCGAAUCUGGUGGCAC	chr6:74230385-74230644(-)$1	259	124	154	13.1340
UGGUGCUCUGUGCAUGGUGCUGUGCGGAGC	chr2:74330263-74330523(+)$1	260	109	139	11.8163
GGGAGAAAGAAAUGAUCACAUGACUUUUAG	chr3:5258624-5258879(+)$1	255	16	46	12.1815
GGUGGGGAUGAGUUGCUUGACUCAUGUUUA	chr19:54970267-54970495(+)$1	228	6	36	12.7852
GGCAGGAGGGGGAUUUCUGUUGCCUUGACA	chr2:239359822-239360057(+)$1	235	67	97	12.2352
GGGAGUGCAGCAGUAAAGACUGCUGCGCCC	chr11:3009206-3009471(-)$1	265	19	49	14.4603
uauauggucaccUAGUUAUAGGUAAGCCUU	chr1:204522534-204522803(+)$1	269	62	92	10.4346
CCUGCAGGCCCUGGGAUACCGAAGGCUGUG	chr12:70637739-70638047(+)$1	308	142	172	11.4932
UUGUUUGGCCAAAGUGGCUGUGGGCCGAGC	chr7:24613722-24613985(+)$1	263	94	124	10.8548
UCAGUGUAAGUCCCUUUUGGGUAUUUUUAU	chr8:42396004-42396226(-)$1	222	164	194	11.5275
UCGGGGCGGCUGCCAUUUGGUAGCUGUUGA	chr17:62501828-62502091(-)$1	263	126	156	12.1702
UUGUGAGUUCUAGCCUUUGUCAGAAAUGCA	chr12:104682378-104682651(+)$1	273	154	184	11.2132
AUGUCAUUGUGUGCUGGGGCAUGCUGUGUU	chr19:16038387-16038637(-)$1	250	113	143	10.5000
GACCUGCUGAAGAGAAUGCUCACCACCAGC	chr2:239360154-239360406(+)$1	252	36	66	11.6966
AUGUUCUCUCUUUCAGAAGAGAGAGAGAGG	chr8:146279529-146279838(+)$1	309	210	240	14.2699
UGGCCAAACAGGUCAGGUGCUUGUUCUGUC	chr11:111608947-111609206(-)$1	259	127	157	9.6942
CGAGCCCGGCAUCUACCCAGGCUCGCUGGG	chr1:6259213-6259574(-)$1	361	7	37	11.3330
GCUCAGCACCGGGUCACAACCACCGUGGGA	chr1:8852525-8852783(-)$1	258	167	197	12.0527
UUGGGGCCAGGUGGAAGCGCGUCUGGUUUU	chr12:77158269-77158555(+)$1	286	194	224	12.3691
CGUGGAUGAAUAUCCCCUAGGUGUUUAUCC	chr5:138630413-138630674(+)$1	261	98	128	10.4752
CUGUCCUAUGGGCUGCACAGCUGGAGGAUG	chr2:11721003-11721259(+)$1	256	211	241	10.5404
GUUGAAAGCCUGUCACAUGGCAGGUACUCA	chr8:128959193-128959473(+)$1	280	145	175	11.5364
CAUCCAUGUUUUCCAGGAGGCAGGUGGGAG	chr12:133351288-133351542(-)$1	254	165	195	11.8466
GUGCACGCUUUCUCUUUUGAGCCAGCGAGG	chr1:90308456-90308727(+)$1	271	138	168	11.5284
UCCGUGUUUUGGCAUCACUGCCAAACAUAU	chr4:52774982-52775246(+)$1	264	209	239	12.6811
CCAGUUAAUUCACCGCCUGGAUGAAUUAUU	chr19:10766056-10766369(+)$1	313	9	39	13.1661
AGAGCUGGGCUGAGAGUUCUGCAGUCUAGC	chr12:121137195-121137443(+)$1	248	70	100	14.5684

#DB
(((.((((((.(((....))).))))))))	chr16:1726605-1726925(+)$1	1	266	296	11.2370
.(((((.(((((((....))))))).))).	chr19:54970219-54970463(+)$1	1	54	84	12.3624
((((((((((((((....)))))))))...	chr11:66408200-66408465(+)$1	1	197	227	13.3089
((((...(((((((....))))))).))))	chr3:176913987-176914233(-)$1	1	85	115	12.9885
((((.(((((.(((....))).))))).))	chr7:923745-924047(+)$1	1	98	128	12.3976
(((((((...((((....))))....))))	chr16:48399219-48399570(-)$1	1	229	259	10.6544
((...(.(((((((....)))))))).)))	chr11:57531324-57531577(+)$1	1	139	169	12.7671
(.(((((((.((((...)))).))))))).	chr19:54970712-54970936(+)$1	1	171	201	9.6541
((((((((((.(((....))).))))))))	chr17:79879026-79879313(-)$1	1	253	283	15.0107
..((((.(((((((....)).))))).)))	chr16:23478677-23478897(-)$1	1	26	56	11.2411
(.(((.((((.(((....))).)).)).))	chr20:361976-362247(+)$1	1	156	186	10.6976
(((.(((((((((((...))))))))))).	chr11:3011266-3011513(-)$1	1	123	153	12.9438
(((((.(((((((((...)))))))))..)	chr14:39736435-39736664(+)$1	1	35	65	11.3905
.(((((((((.(((...)))))))))))).	chr19:44342009-44342393(+)$1	1	176	206	10.2605
((.(.(((((..((....))))))).).))	chr6:168364548-168364809(+)$1	1	86	116	10.8898
((((..(((.((((....)))))))....)	chr4:152020806-152021122(+)$1	1	120	150	11.0711
((((.(((.(..((....))..).))).))	chr18:3011723-3012040(-)$1	1	150	180	11.9502
(.((((((.(((((....))))).))).))	chr11:9286484-9286849(-)$1	1	220	250	10.8883
(..(...(((((((....))))))))..))	chr17:20905179-20905417(-)$1	1	98	128	13.0052
(.((((.(((((((....)))))))...))	chr5:663106-663409(+)$1	1	112	142	13.1613
(((((.((((..((....)).)))).))))	chr14:23990136-23990383(+)$1	1	207	237	11.3633
(((((.(((((.((....)).))))).)..	chr17:45912170-45912394(+)$1	1	35	65	10.9929
((.((.((((.(((....))))))).)).)	chr21:44269749-44270001(-)$1	1	122	152	10.9289
.((((((((((.((....)).))))))).)	chr6:74230385-74230644(-)$1	1	124	154	13.1340
.)))((((((((((......))))))))))	chr2:74330263-74330523(+)$1	1	109	139	11.8163
(((((((((..(((....)))..)))))..	chr3:5258624-5258879(+)$1	1	16	46	12.1815
..((((.(((((((....))))))).))))	chr19:54970267-54970495(+)$1	1	6	36	12.7852
((((..((((.(((....))).))))....	chr2:239359822-239360057(+)$1	1	67	97	12.2352
(((.((((((((((....))))))))))))	chr11:3009206-3009471(-)$1	1	19	49	14.4603
.(((.(((.(((((....)))))..))).)	chr1:204522534-204522803(+)$1	1	62	92	10.4346
(.((((((((.(((....)))..)))).))	chr12:70637739-70638047(+)$1	1	142	172	11.4932
((((((((((..((...))...))))))))	chr7:24613722-24613985(+)$1	1	94	124	10.8548
..((((.(((((((....))).)))).)))	chr8:42396004-42396226(-)$1	1	164	194	11.5275
))))((((((((((....))))))))))..	chr17:62501828-62502091(-)$1	1	126	156	12.1702
(((((..((((.((....)).)))).))))	chr12:104682378-104682651(+)$1	1	154	184	11.2132
(((.(((.((((((....)))))).))).)	chr19:16038387-16038637(-)$1	1	113	143	10.5000
((.(((.((..(((....)))..)).))).	chr2:239360154-239360406(+)$1	1	36	66	11.6966
...(((((((((((....))))))))))).	chr8:146279529-146279838(+)$1	1	210	240	14.2699
.(((..(((((((.....)))))))..)))	chr11:111608947-111609206(-)$1	1	127	157	9.6942
((..((((((.(((....)))...))))))	chr1:6259213-6259574(-)$1	1	7	37	11.3330
(.((..(((.((((....))).).))).))	chr1:8852525-8852783(-)$1	1	167	197	12.0527
(((((((((((((......)))))))))))	chr12:77158269-77158555(+)$1	1	194	224	12.3691
)).(((((((((((.....)))))))))))	chr5:138630413-138630674(+)$1	1	98	128	10.4752
(.(((((.(.((((....)))).)))))))	chr2:11721003-11721259(+)$1	1	211	241	10.5404
.((((..(((((((....)))))))..)))	chr8:128959193-128959473(+)$1	1	145	175	11.5364
..(((((.(...((....)).).))))).)	chr12:133351288-133351542(-)$1	1	165	195	11.8466
((((.((((..(((....)))..))))..)	chr1:90308456-90308727(+)$1	1	138	168	11.5284
..((((((((((((....))))))).))))	chr4:52774982-52775246(+)$1	1	209	239	12.6811
((((.(((((((((....)).))))))).)	chr19:10766056-10766369(+)$1	1	9	39	13.1661
((((((((((((((....)).)))))))))	chr12:121137195-121137443(+)$1	1	70	100	14.5684

#PSSM
e : 0.18	d : 0.16	c : 0.12	[ : 0.06	g : 0.06	b : 0.06	= : 0.06	! : 0.06	" : 0.06	f : 0.04	: : 0.04	] : 0.02	G : 0.02	h : 0.02	$ : 0.02	a : 0.02	
e : 0.18	d : 0.14	[ : 0.14	c : 0.14	! : 0.08	g : 0.06	= : 0.06	b : 0.04	f : 0.04	i : 0.04	" : 0.04	h : 0.02	$ : 0.02	
d : 0.21	e : 0.19	c : 0.14	g : 0.08	b : 0.06	= : 0.06	[ : 0.06	i : 0.04	! : 0.04	f : 0.02	" : 0.02	h : 0.02	$ : 0.02	: : 0.02	
e : 0.18	d : 0.18	c : 0.16	= : 0.10	[ : 0.08	g : 0.08	b : 0.06	i : 0.04	a : 0.04	f : 0.02	" : 0.02	h : 0.02	! : 0.02	
= : 0.18	e : 0.14	[ : 0.12	d : 0.12	c : 0.10	! : 0.08	f : 0.06	" : 0.06	g : 0.06	i : 0.04	a : 0.02	b : 0.02	
= : 0.18	c : 0.12	e : 0.12	d : 0.12	! : 0.12	[ : 0.10	g : 0.08	i : 0.06	f : 0.04	" : 0.04	a : 0.02	
= : 0.18	[ : 0.14	e : 0.14	c : 0.12	g : 0.10	d : 0.10	i : 0.08	f : 0.04	" : 0.04	! : 0.04	b : 0.02	
g : 0.23	= : 0.18	d : 0.14	e : 0.10	c : 0.10	i : 0.08	[ : 0.06	f : 0.04	b : 0.04	" : 0.02	
g : 0.23	= : 0.18	d : 0.14	e : 0.10	i : 0.08	f : 0.06	[ : 0.06	b : 0.04	c : 0.04	a : 0.04	" : 0.02	
g : 0.21	= : 0.18	e : 0.12	d : 0.12	i : 0.08	[ : 0.08	f : 0.06	! : 0.06	" : 0.04	b : 0.02	a : 0.02	
g : 0.21	[ : 0.18	= : 0.16	! : 0.14	d : 0.12	e : 0.08	i : 0.04	f : 0.02	a : 0.02	" : 0.02	
c : 0.27	g : 0.19	= : 0.16	d : 0.08	! : 0.08	e : 0.06	[ : 0.06	i : 0.04	f : 0.02	" : 0.02	
c : 0.27	b : 0.21	g : 0.18	= : 0.14	d : 0.08	i : 0.04	e : 0.04	f : 0.02	
c : 0.27	b : 0.21	g : 0.16	= : 0.12	d : 0.08	i : 0.04	e : 0.04	f : 0.02	n : 0.02	o : 0.02	
m : 0.82	l : 0.06	o : 0.04	n : 0.04	= : 0.02	i : 0.02	
m : 0.82	l : 0.10	o : 0.04	n : 0.04	
m : 0.82	l : 0.10	o : 0.04	n : 0.04	
m : 0.82	l : 0.04	o : 0.04	n : 0.04	d : 0.02	c : 0.02	b : 0.02	
c : 0.27	b : 0.21	g : 0.18	d : 0.08	= : 0.08	i : 0.04	e : 0.04	o : 0.04	f : 0.02	n : 0.02	
c : 0.27	b : 0.19	g : 0.18	= : 0.12	d : 0.08	i : 0.04	e : 0.04	o : 0.02	3 : 0.02	f : 0.02	
c : 0.25	g : 0.18	] : 0.16	= : 0.14	d : 0.08	i : 0.06	e : 0.06	2 : 0.02	3 : 0.02	f : 0.02	
g : 0.21	] : 0.16	= : 0.16	d : 0.12	e : 0.10	2 : 0.10	i : 0.06	3 : 0.04	f : 0.02	a : 0.02	
g : 0.23	= : 0.18	e : 0.12	d : 0.10	i : 0.08	2 : 0.08	f : 0.04	a : 0.04	] : 0.04	4 : 0.02	b : 0.02	c : 0.02	3 : 0.02	
g : 0.23	= : 0.18	d : 0.14	e : 0.12	i : 0.08	] : 0.06	f : 0.04	b : 0.04	4 : 0.02	c : 0.02	2 : 0.02	3 : 0.02	a : 0.02	
g : 0.23	= : 0.18	e : 0.14	d : 0.14	i : 0.08	c : 0.08	f : 0.04	] : 0.04	4 : 0.02	2 : 0.02	b : 0.02	
] : 0.18	= : 0.18	e : 0.12	c : 0.10	i : 0.08	d : 0.08	g : 0.06	f : 0.04	4 : 0.04	a : 0.04	2 : 0.04	b : 0.02	3 : 0.02	
= : 0.18	e : 0.16	c : 0.14	i : 0.08	g : 0.08	] : 0.08	2 : 0.06	d : 0.06	f : 0.04	b : 0.04	4 : 0.04	a : 0.02	3 : 0.02	
= : 0.18	e : 0.16	] : 0.14	c : 0.10	g : 0.08	d : 0.08	2 : 0.06	f : 0.04	3 : 0.04	i : 0.04	4 : 0.04	a : 0.02	b : 0.02	
d : 0.18	e : 0.14	= : 0.14	c : 0.12	] : 0.12	4 : 0.06	3 : 0.04	g : 0.04	2 : 0.04	i : 0.04	b : 0.04	: : 0.02	f : 0.02	
d : 0.21	c : 0.18	e : 0.16	= : 0.10	3 : 0.08	g : 0.04	] : 0.04	: : 0.04	b : 0.04	4 : 0.04	2 : 0.02	i : 0.02	f : 0.02	

#score	593.7319397994183
#seq	50
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_UTR_m3_run1.txt

#BEAR
"""ffffff"""ddddqqqqqqqqdddd4444ffffffff	chr12:53434480-53434723(+)$1	243	36	76	31.3902
fffff!!gggggggbbqqqqqqqqbb22ggggggg]ffff	chr11:62609005-62609323(-)$1	318	15	55	29.1998

#otherMatches

#Seq PSSM
CCAGCCCCUCCUCUUAUUUAAUUCUGAGUUUUGGGGGCCA	chr12:53434480-53434723(+)$1	243	36	76	31.3902
GGCCGCCGAGGCGACCGAAGUAAAGGUaucgcuucucggc	chr11:62609005-62609323(-)$1	318	15	55	29.1998

#DB
...((((((...((((........))))....))))))))	chr12:53434480-53434723(+)$1	1	36	76	31.3902
(((((..(((((((((........))..))))))).))))	chr11:62609005-62609323(-)$1	1	15	55	29.1998

#PSSM
" : 0.50	f : 0.50	
" : 0.50	f : 0.50	
" : 0.50	f : 0.50	
f : 1.00	
f : 1.00	
f : 0.50	! : 0.50	
f : 0.50	! : 0.50	
f : 0.50	g : 0.50	
f : 0.50	g : 0.50	
" : 0.50	g : 0.50	
" : 0.50	g : 0.50	
" : 0.50	g : 0.50	
d : 0.50	g : 0.50	
d : 0.50	g : 0.50	
d : 0.50	b : 0.50	
d : 0.50	b : 0.50	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.50	b : 0.50	
d : 0.50	b : 0.50	
d : 0.50	2 : 0.50	
d : 0.50	2 : 0.50	
4 : 0.50	g : 0.50	
4 : 0.50	g : 0.50	
4 : 0.50	g : 0.50	
4 : 0.50	g : 0.50	
f : 0.50	g : 0.50	
f : 0.50	g : 0.50	
f : 0.50	g : 0.50	
f : 0.50	] : 0.50	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	

#score	60.590085452399975
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_CDS_m2_run1.txt

#BEAR
b::::::::::::DDDD{CCC:::::::::CCCKKBBEEE	chr15:35274398-35274677(-)$1	279	29	69	14.6119
@@@@@@@@BBZZZDDDD}DDDD~~~~CCC~~~~FFFFFF}	chr1:192989370-192989667(-)$1	297	132	172	26.6070
g:::CCC______DDDDYYDDDD~~~~BBZZZCCCYYFFF	chr6:10803729-10804102(+)$1	373	239	279	22.6963
@@@@@@@CCCZZZEEEEEDDDD@@@@@@@@@@@@DDDD::	chr2:175006448-175006754(-)$1	306	264	304	22.6249
::::::::::::EEEEEDDDD{CCCCCC::::::EEEEEC	chr6:56917835-56918101(+)$1	266	18	58	17.9734

#otherMatches

#Seq PSSM
UACAACUAUAAAACCAUUGUUAAAAAAAUCUUGGCCAAGC	chr15:35274398-35274677(-)$1	279	29	69	14.6119
augcaacuggucuguguaccacaguuugagaaacacuUUG	chr1:192989370-192989667(-)$1	297	132	172	26.6070
AAAACUUGGCAAAUUUUAAAGAUUUCAUCGACCUCACUUG	chr6:10803729-10804102(+)$1	373	239	279	22.6963
UAAAUAAUGCAUAUGAUACAUCUAAUAUUGUUAUGGAAUU	chr2:175006448-175006754(-)$1	306	264	304	22.6249
CAUAUUUAGUAACCCCUAAUGGCAGUAAUAAAACUACUAG	chr6:56917835-56918101(+)$1	266	18	58	17.9734

#DB
)............((((.(((.........(((..(((((	chr15:35274398-35274677(-)$1	1	29	69	14.6119
........))...)))).))))....)))....)))))).	chr1:192989370-192989667(-)$1	1	132	172	26.6070
)...)))......))))..))))....))...)))..)))	chr6:10803729-10804102(+)$1	1	239	279	22.6963
.......)))...)))))))))............))))..	chr2:175006448-175006754(-)$1	1	264	304	22.6249
............(((((((((.((((((......((((((	chr6:56917835-56918101(+)$1	1	18	58	17.9734

#PSSM
@ : 0.40	b : 0.20	g : 0.20	: : 0.20	
: : 0.60	@ : 0.40	
: : 0.60	@ : 0.40	
: : 0.60	@ : 0.40	
: : 0.40	@ : 0.40	C : 0.20	
: : 0.40	@ : 0.40	C : 0.20	
: : 0.40	@ : 0.40	C : 0.20	
: : 0.40	@ : 0.20	_ : 0.20	C : 0.20	
: : 0.40	B : 0.20	_ : 0.20	C : 0.20	
: : 0.40	B : 0.20	_ : 0.20	C : 0.20	
: : 0.40	Z : 0.40	_ : 0.20	
: : 0.40	Z : 0.40	_ : 0.20	
Z : 0.40	: : 0.20	_ : 0.20	E : 0.20	
D : 0.60	E : 0.40	
D : 0.60	E : 0.40	
D : 0.60	E : 0.40	
D : 0.60	E : 0.40	
{ : 0.20	} : 0.20	Y : 0.20	E : 0.20	D : 0.20	
D : 0.60	C : 0.20	Y : 0.20	
D : 0.80	C : 0.20	
D : 0.80	C : 0.20	
D : 0.60	: : 0.20	{ : 0.20	
: : 0.20	~ : 0.20	D : 0.20	@ : 0.20	C : 0.20	
~ : 0.40	: : 0.20	@ : 0.20	C : 0.20	
~ : 0.40	: : 0.20	@ : 0.20	C : 0.20	
~ : 0.40	: : 0.20	@ : 0.20	C : 0.20	
C : 0.40	: : 0.20	~ : 0.20	@ : 0.20	
C : 0.40	: : 0.20	B : 0.20	@ : 0.20	
: : 0.40	C : 0.20	B : 0.20	@ : 0.20	
: : 0.40	~ : 0.20	Z : 0.20	@ : 0.20	
C : 0.20	~ : 0.20	Z : 0.20	@ : 0.20	: : 0.20	
C : 0.20	~ : 0.20	Z : 0.20	@ : 0.20	: : 0.20	
C : 0.40	~ : 0.20	@ : 0.20	: : 0.20	
K : 0.20	F : 0.20	C : 0.20	@ : 0.20	: : 0.20	
K : 0.20	F : 0.20	C : 0.20	D : 0.20	E : 0.20	
B : 0.20	F : 0.20	Y : 0.20	D : 0.20	E : 0.20	
B : 0.20	F : 0.20	Y : 0.20	D : 0.20	E : 0.20	
E : 0.40	F : 0.40	D : 0.20	
E : 0.40	F : 0.40	: : 0.20	
E : 0.20	} : 0.20	F : 0.20	: : 0.20	C : 0.20	

#score	104.51375552536
#seq	5
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_transcript_m2_run2.txt

#BEAR
eeeeeooooooeeeee	chr11:122929515-122929766(-)$1	251	202	218	11.8350
eeeeeooooooeeeee	chr5:137896673-137896887(-)$1	214	164	180	11.8350
eeeeeooooooeeeee	chr8:56986294-56986542(-)$1	248	136	152	11.8350
#eeeeennnnneeeee	chr19:48259101-48259319(+)$1	218	180	196	10.9344
bddddoooooodddd]	chr5:40832660-40832934(-)$1	274	15	31	8.2189
eeeeeeeellleeeee	chr9:77414756-77414963(+)$1	207	101	117	9.1561
:eeeeennnnneeeee	chrX:132887536-132887814(-)$1	278	12	28	10.1390
gggggooooooggggg	chr2:207026971-207027184(+)$1	213	148	164	7.9257
:eeeeennnnneeeee	chr2:232321087-232321334(-)$1	247	56	72	10.1390
:eeeeennnnneeeee	chr1:173760872-173761110(+)$1	238	125	141	10.1390
eeeeeooooooeeeee	chr1:76255061-76255332(+)$1	271	194	210	11.8350
eeeeeeeellleeeee	chr9:77414752-77414956(+)$1	204	105	121	9.1561
deeeeennnnneeeee	chr2:76672288-76672499(-)$1	211	132	148	10.6961
gggggooooooggggg	chr2:207026939-207027158(+)$1	219	180	196	7.9257
eeeeeeeellleeeee	chr10:22221971-22222222(+)$1	251	147	163	9.1561
eeeeeennnnneeeee	chr1:173760910-173761127(+)$1	217	87	103	10.9157
gggggooooooggggg	chr2:207026958-207027171(+)$1	213	161	177	7.9257
eeeeeooooooeeeee	chr17:18965169-18965417(+)$1	248	140	156	11.8350
)eeeeennnnneeeee	chr11:17096140-17096381(-)$1	241	121	137	10.5409
:eeeeennnnneeeee	chr14:50535206-50535458(+)$1	252	9	25	10.1390
eeeeeooooooeeeee	chr1:45242079-45242350(+)$1	271	222	238	11.8350
Feeeeennnnneeeee	chr13:98856129-98856379(-)$1	250	130	146	10.4951
:eeeeennnnneeeee	chr14:90088236-90088455(+)$1	219	82	98	10.1390
eeeeeeeellleeeee	chr8:144624203-144624473(+)$1	270	123	139	9.1561
:eeeeennnnneeeee	chr14:90088180-90088417(+)$1	237	138	154	10.1390
eeeeeooooooeeeee	chr14:21860212-21860451(-)$1	239	182	198	11.8350
!eeeeennnnneeeee	chr3:186502542-186502751(+)$1	209	167	183	10.9861
eeeeeeeellleeeee	chr9:77414748-77414952(+)$1	204	109	125	9.1561
deeeeennnnneeeee	chr2:76672299-76672512(-)$1	213	145	161	10.6961
"ddddoooooodddd4	chr5:175055142-175055393(+)$1	251	173	189	8.5885
eeeeeooooooeeeee	chr11:17097221-17097511(-)$1	290	191	207	11.8350
!!cccoooooocccee	chr4:4922643-4922882(-)$1	239	6	22	8.3117
!eeeeennnnneeeee	chr17:33900638-33900874(+)$1	236	141	157	10.9861
gggggooooooggggg	chr15:66795079-66795300(-)$1	221	182	198	7.9257
!eeeeennnnneeeee	chr6:86386907-86387136(-)$1	229	169	185	10.9861
eeeeeooooooeeeee	chr2:114763062-114763298(-)$1	236	133	149	11.8350
eeeeeooooooeeeee	chr20:47895403-47895641(+)$1	238	10	26	11.8350
#eeeeennnnneeeee	chr1:173835915-173836165(-)$1	250	115	131	10.9344
"ddddoooooodddd2	chr2:234184411-234184627(+)$1	216	120	136	8.3474
deeeeennnnneeeee	chr2:76672259-76672463(-)$1	204	96	112	10.6961
eeeeeooooooeeeee	chr12:57038708-57038962(-)$1	254	233	249	11.8350
$ddddoooooodddd4	chr11:100710382-100710627(+)$1	245	103	119	8.4102
eeeeeooooooeeeee	chr11:93464051-93464272(-)$1	221	91	107	11.8350
#ddddoooooodddd5	chr1:173833414-173833677(-)$1	263	234	250	7.7982
"ddddoooooodddd4	chr2:203142751-203143011(+)$1	260	127	143	8.5885
eeeeeooooooeeeee	chr5:137896637-137896851(-)$1	214	128	144	11.8350
[ddddoooooodddd]	chr2:21249585-21249829(-)$1	244	159	175	8.5296
:eeeeennnnneeeee	chr14:90088227-90088436(+)$1	209	91	107	10.1390
#ddddoooooodddd5	chr1:173833405-173833614(-)$1	209	171	187	7.7982
eeeeeeeellleeeee	chr9:77414741-77414948(+)$1	207	116	132	9.1561
:eeeeennnnneeeee	chr6:52860584-52860808(+)$1	224	2	18	10.1390
eeeeeooooooeeeee	chr17:19093371-19093609(-)$1	238	136	152	11.8350
gggggooooooggggg	chr14:95999590-95999844(-)$1	254	119	135	7.9257
eeeeeooooooeeeee	chr19:50000951-50001160(+)$1	209	150	166	11.8350

#otherMatches

#Seq PSSM
AGUAAUUUGUUUUAUU	chr11:122929515-122929766(-)$1	251	202	218	11.8350
GAAGAUGCAGUUCUUC	chr5:137896673-137896887(-)$1	214	164	180	11.8350
UUCUGAGCCAGCAGAA	chr8:56986294-56986542(-)$1	248	136	152	11.8350
AGAAGGCCUUUCCUUC	chr19:48259101-48259319(+)$1	218	180	196	10.9344
CCAAAUAAGUUUUUGA	chr5:40832660-40832934(-)$1	274	15	31	8.2189
caggguugauucagcu	chr9:77414756-77414963(+)$1	207	101	117	9.1561
AAGUUCAGUAAGGACU	chrX:132887536-132887814(-)$1	278	12	28	10.1390
CUCAAAACAAAUUGAG	chr2:207026971-207027184(+)$1	213	148	164	7.9257
UGCACAAAUUCUGUGU	chr2:232321087-232321334(-)$1	247	56	72	10.1390
ugcugcauguggcagu	chr1:173760872-173761110(+)$1	238	125	141	10.1390
AGUAUGUGUAAAUACU	chr1:76255061-76255332(+)$1	271	194	210	11.8350
caggguugauucagcu	chr9:77414752-77414956(+)$1	204	105	121	9.1561
ggaccggacuucgguc	chr2:76672288-76672499(-)$1	211	132	148	10.6961
CUCAAAACAAAUUGAG	chr2:207026939-207027158(+)$1	219	180	196	7.9257
caggguugauucagcu	chr10:22221971-22222222(+)$1	251	147	163	9.1561
ugcugcauguggcagu	chr1:173760910-173761127(+)$1	217	87	103	10.9157
CUCAAAACAAAUUGAG	chr2:207026958-207027171(+)$1	213	161	177	7.9257
gagagguagcguuuuc	chr17:18965169-18965417(+)$1	248	140	156	11.8350
aguuuccaccagaaau	chr11:17096140-17096381(-)$1	241	121	137	10.5409
agcucuccaaaggagc	chr14:50535206-50535458(+)$1	252	9	25	10.1390
UUGCUCUCCUUGGUAA	chr1:45242079-45242350(+)$1	271	222	238	11.8350
ggaccgguuuucgguc	chr13:98856129-98856379(-)$1	250	130	146	10.4951
ucagcugaucuggcug	chr14:90088236-90088455(+)$1	219	82	98	10.1390
caggguugauucggcu	chr8:144624203-144624473(+)$1	270	123	139	9.1561
ucagcugaucuggcug	chr14:90088180-90088417(+)$1	237	138	154	10.1390
GUAUGUUUUCUUGUAU	chr14:21860212-21860451(-)$1	239	182	198	11.8350
UUUGAUGUGGGAUCGG	chr3:186502542-186502751(+)$1	209	167	183	10.9861
caggguugauucagcu	chr9:77414748-77414952(+)$1	204	109	125	9.1561
ggaccggacuucgguc	chr2:76672299-76672512(-)$1	213	145	161	10.6961
agcuguaugcucaguc	chr5:175055142-175055393(+)$1	251	173	189	8.5885
AUGUGCAUUCUCACGU	chr11:17097221-17097511(-)$1	290	191	207	11.8350
GAAGACCACAAUCUCA	chr4:4922643-4922882(-)$1	239	6	22	8.3117
UUGUGGUUUUUCCACA	chr17:33900638-33900874(+)$1	236	141	157	10.9861
GAGAAAUGUGAUUCUU	chr15:66795079-66795300(-)$1	221	182	198	7.9257
UUUACAUAUGUUGUAA	chr6:86386907-86387136(-)$1	229	169	185	10.9861
cccggaaacccccggg	chr2:114763062-114763298(-)$1	236	133	149	11.8350
GGAGAAAUGAGUUUCU	chr20:47895403-47895641(+)$1	238	10	26	11.8350
ACAGAAGGGAUUUCUG	chr1:173835915-173836165(-)$1	250	115	131	10.9344
UCUGAGAGUGAUCGGC	chr2:234184411-234184627(+)$1	216	120	136	8.3474
ggaccggacuucgguc	chr2:76672259-76672463(-)$1	204	96	112	10.6961
AGUAAGGACUAUUGCU	chr12:57038708-57038962(-)$1	254	233	249	11.8350
agcugcauucucaguc	chr11:100710382-100710627(+)$1	245	103	119	8.4102
UGCUACUUUGCUAGCA	chr11:93464051-93464272(-)$1	221	91	107	11.8350
GGGUUUUUAAUGACCA	chr1:173833414-173833677(-)$1	263	234	250	7.7982
CUGACUCAUUCGUCAC	chr2:203142751-203143011(+)$1	260	127	143	8.5885
GAAGAUGCAGUUCUUC	chr5:137896637-137896851(-)$1	214	128	144	11.8350
AACAUGAGCAGGUGUG	chr2:21249585-21249829(-)$1	244	159	175	8.5296
ucagcugaucuggcug	chr14:90088227-90088436(+)$1	209	91	107	10.1390
GGGUUUUUAAUGACCA	chr1:173833405-173833614(-)$1	209	171	187	7.7982
caggguugauucagcu	chr9:77414741-77414948(+)$1	207	116	132	9.1561
ggaccggucuucgguc	chr6:52860584-52860808(+)$1	224	2	18	10.1390
gagagguagcguuuuc	chr17:19093371-19093609(-)$1	238	136	152	11.8350
UGUUUUCUGUUGAACA	chr14:95999590-95999844(-)$1	254	119	135	7.9257
CCCAGCAUGCCCUGGG	chr19:50000951-50001160(+)$1	209	150	166	11.8350

#DB
(((((......)))))	chr11:122929515-122929766(-)$1	1	202	218	11.8350
(((((......)))))	chr5:137896673-137896887(-)$1	1	164	180	11.8350
(((((......)))))	chr8:56986294-56986542(-)$1	1	136	152	11.8350
.(((((.....)))))	chr19:48259101-48259319(+)$1	1	180	196	10.9344
(((((......)))).	chr5:40832660-40832934(-)$1	1	15	31	8.2189
((((((((...)))))	chr9:77414756-77414963(+)$1	1	101	117	9.1561
.(((((.....)))))	chrX:132887536-132887814(-)$1	1	12	28	10.1390
(((((......)))))	chr2:207026971-207027184(+)$1	1	148	164	7.9257
.(((((.....)))))	chr2:232321087-232321334(-)$1	1	56	72	10.1390
.(((((.....)))))	chr1:173760872-173761110(+)$1	1	125	141	10.1390
(((((......)))))	chr1:76255061-76255332(+)$1	1	194	210	11.8350
((((((((...)))))	chr9:77414752-77414956(+)$1	1	105	121	9.1561
)(((((.....)))))	chr2:76672288-76672499(-)$1	1	132	148	10.6961
(((((......)))))	chr2:207026939-207027158(+)$1	1	180	196	7.9257
((((((((...)))))	chr10:22221971-22222222(+)$1	1	147	163	9.1561
)(((((.....)))))	chr1:173760910-173761127(+)$1	1	87	103	10.9157
(((((......)))))	chr2:207026958-207027171(+)$1	1	161	177	7.9257
(((((......)))))	chr17:18965169-18965417(+)$1	1	140	156	11.8350
.(((((.....)))))	chr11:17096140-17096381(-)$1	1	121	137	10.5409
.(((((.....)))))	chr14:50535206-50535458(+)$1	1	9	25	10.1390
(((((......)))))	chr1:45242079-45242350(+)$1	1	222	238	11.8350
)(((((.....)))))	chr13:98856129-98856379(-)$1	1	130	146	10.4951
.(((((.....)))))	chr14:90088236-90088455(+)$1	1	82	98	10.1390
((((((((...)))))	chr8:144624203-144624473(+)$1	1	123	139	9.1561
.(((((.....)))))	chr14:90088180-90088417(+)$1	1	138	154	10.1390
(((((......)))))	chr14:21860212-21860451(-)$1	1	182	198	11.8350
.(((((.....)))))	chr3:186502542-186502751(+)$1	1	167	183	10.9861
((((((((...)))))	chr9:77414748-77414952(+)$1	1	109	125	9.1561
)(((((.....)))))	chr2:76672299-76672512(-)$1	1	145	161	10.6961
.((((......)))).	chr5:175055142-175055393(+)$1	1	173	189	8.5885
(((((......)))))	chr11:17097221-17097511(-)$1	1	191	207	11.8350
..(((......)))))	chr4:4922643-4922882(-)$1	1	6	22	8.3117
.(((((.....)))))	chr17:33900638-33900874(+)$1	1	141	157	10.9861
(((((......)))))	chr15:66795079-66795300(-)$1	1	182	198	7.9257
.(((((.....)))))	chr6:86386907-86387136(-)$1	1	169	185	10.9861
(((((......)))))	chr2:114763062-114763298(-)$1	1	133	149	11.8350
(((((......)))))	chr20:47895403-47895641(+)$1	1	10	26	11.8350
.(((((.....)))))	chr1:173835915-173836165(-)$1	1	115	131	10.9344
.((((......)))).	chr2:234184411-234184627(+)$1	1	120	136	8.3474
)(((((.....)))))	chr2:76672259-76672463(-)$1	1	96	112	10.6961
(((((......)))))	chr12:57038708-57038962(-)$1	1	233	249	11.8350
.((((......)))).	chr11:100710382-100710627(+)$1	1	103	119	8.4102
(((((......)))))	chr11:93464051-93464272(-)$1	1	91	107	11.8350
.((((......)))).	chr1:173833414-173833677(-)$1	1	234	250	7.7982
.((((......)))).	chr2:203142751-203143011(+)$1	1	127	143	8.5885
(((((......)))))	chr5:137896637-137896851(-)$1	1	128	144	11.8350
.((((......)))).	chr2:21249585-21249829(-)$1	1	159	175	8.5296
.(((((.....)))))	chr14:90088227-90088436(+)$1	1	91	107	10.1390
.((((......)))).	chr1:173833405-173833614(-)$1	1	171	187	7.7982
((((((((...)))))	chr9:77414741-77414948(+)$1	1	116	132	9.1561
.(((((.....)))))	chr6:52860584-52860808(+)$1	1	2	18	10.1390
(((((......)))))	chr17:19093371-19093609(-)$1	1	136	152	11.8350
(((((......)))))	chr14:95999590-95999844(-)$1	1	119	135	7.9257
(((((......)))))	chr19:50000951-50001160(+)$1	1	150	166	11.8350

#PSSM
e : 0.40	: : 0.14	g : 0.09	# : 0.07	! : 0.07	d : 0.05	" : 0.05	b : 0.01	) : 0.01	F : 0.01	$ : 0.01	[ : 0.01	
e : 0.74	d : 0.14	g : 0.09	! : 0.01	
e : 0.74	d : 0.14	g : 0.09	c : 0.01	
e : 0.74	d : 0.14	g : 0.09	c : 0.01	
e : 0.74	d : 0.14	g : 0.09	c : 0.01	
o : 0.53	e : 0.46	
o : 0.53	n : 0.35	e : 0.11	
o : 0.53	n : 0.35	e : 0.11	
o : 0.53	n : 0.35	l : 0.11	
o : 0.53	n : 0.35	l : 0.11	
o : 0.53	n : 0.35	l : 0.11	
e : 0.74	d : 0.14	g : 0.09	c : 0.01	
e : 0.74	d : 0.14	g : 0.09	c : 0.01	
e : 0.74	d : 0.14	g : 0.09	c : 0.01	
e : 0.75	d : 0.14	g : 0.09	
e : 0.75	g : 0.09	4 : 0.05	] : 0.03	5 : 0.03	2 : 0.01	

#score	546.6630006305018
#seq	54
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF756RYJ_AARS_UTR_m2_run2.txt

#BEAR
ddd]dddd22ccc]ccc]dddd]hhhhhhhh]bb333ddd	chr3:128211718-128211966(+)$1	248	112	152	41.9640
ddd]dddd22ccc]ccc]dddd]hhhhhhhh]bb333ddd	chr3:128211660-128211918(+)$1	258	170	210	41.9640

#otherMatches

#Seq PSSM
GGGACCUGGGCGCGGGGUGGCGGCGCUCACCAGCAGAGCC	chr3:128211718-128211966(+)$1	248	112	152	41.9640
GGGACCUGGGCGCGGGGUGGCGGCGCUCACCAGCAGAGCC	chr3:128211660-128211918(+)$1	258	170	210	41.9640

#DB
))).))))..))).))).)))).)))))))).))...)))	chr3:128211718-128211966(+)$1	1	112	152	41.9640
))).))))..))).))).)))).)))))))).))...)))	chr3:128211660-128211918(+)$1	1	170	210	41.9640

#PSSM
d : 1.00	
d : 1.00	
d : 1.00	
] : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
2 : 1.00	
2 : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
] : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
] : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
] : 1.00	
h : 1.00	
h : 1.00	
h : 1.00	
h : 1.00	
h : 1.00	
h : 1.00	
h : 1.00	
h : 1.00	
] : 1.00	
b : 1.00	
b : 1.00	
3 : 1.00	
3 : 1.00	
3 : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	

#score	83.92804554939998
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_CDS_m2_run2.txt

#BEAR
==========[bbpppppppbb]======	chr7:150935456-150935682(+)$1	226	92	121	16.3775
!!ggggggg[a[aqqqqqqqqa]a]gggg	chrX:48814285-48814537(-)$1	252	171	200	10.1332
==========[ccclllccc=========	chr12:62996797-62997070(+)$1	273	31	60	9.5102
[ccc!!bb[ddddpppppppddddbb]cc	chr22:20073654-20073903(+)$1	249	81	110	11.5678
======[ccc[cccnnnnnccc]ccc]==	chr22:20073867-20074168(+)$1	301	102	131	8.6740
fbbbb[bb!!cccpppppppccc22bb33	chr17:30801680-30801883(+)$1	203	67	96	11.8526
a[a[ffffff[bboooooobbffffff]a	chr1:156389923-156390193(-)$1	270	70	99	7.4128
eee!!==========mmmm==========	chr19:18111975-18112272(+)$1	297	232	261	7.1412
fff[a[cccddddpppppppdddd]ccc]	chr22:21983337-21983582(-)$1	245	118	147	12.0207
Cffffff[eeeeepppppppeeeee]fff	chr7:150935266-150935514(+)$1	248	215	244	11.0824
b==========rrrrrrrrr=========	chr12:62997009-62997281(+)$1	272	180	209	14.4662
gggggg####cccpppppppccc4444gg	chr19:40741696-40741934(-)$1	238	79	108	13.7381
ccc!!eeeee[arrrrrrrrra]eeeee2	chr9:101558592-101558800(-)$1	208	166	195	11.9514
b:dddd!!eeeeepppppppeeeeedddd	chr9:139563966-139564209(+)$1	243	157	186	10.3495
[==========ssssssssss========	chr12:69135560-69135827(+)$1	267	93	122	11.6201
eeeiiiiiiiiirrrrrrrrriiiiiiii	chr9:101558279-101558523(-)$1	244	213	242	13.2805
g[dddd!!bb[bbssssssssssbb]bb2	chr3:152553507-152553757(+)$1	250	202	231	7.2919
c####ffffffrrrrrrrrrffffff444	chr17:46655280-46655515(-)$1	235	86	115	10.3750
==========[ccclllccc=========	chr12:62996679-62996961(+)$1	282	149	178	9.5102
==========[bbpppppppbb]======	chr7:150935513-150935736(+)$1	223	35	64	16.3775
fffff[bb[bbbbpppppppbb]bb]bb]	chr1:248020672-248020920(+)$1	248	96	125	11.6658
======[ccc[cccnnnnnccc]ccc]==	chr22:20073835-20074067(+)$1	232	134	163	8.6740
a[ggggggg!!aqqqqqqqqa4444gggg	chr17:80211014-80211280(-)$1	266	48	77	10.0249
GGGggggggg[bbpppppppbb]gggggg	chr10:70287015-70287285(-)$1	270	163	192	12.9152
ffffff!!eeeeerrrrrrrrreeeeeff	chr13:47127534-47127781(+)$1	247	5	34	10.8213
Ddddd[gggggggpppppppggggggg22	chr9:101558330-101558587(-)$1	257	23	52	12.1568
d!!ccc!!eeeeepppppppeeeee333c	chr3:15123984-15124247(-)$1	263	226	255	13.3339
fbbbb[bb!!cccpppppppccc22bb33	chr17:30801683-30801914(+)$1	231	64	93	11.8526
edddd[gggggggpppppppggggggg22	chr9:101558488-101558740(-)$1	252	176	205	12.9837
:iiiiiiiii[aooooooa]iiiiiiiii	chr5:154135214-154135449(+)$1	235	41	70	8.8804
:ggggggg[bb[apppppppa]bbggggg	chr22:46505757-46506000(+)$1	243	2	31	11.9496
F:bb[eeeeecccpppppppccc]eeeee	chr9:140006577-140006827(-)$1	250	198	227	10.5647
eeeee"""eeeeeqqqqqqqqeeeee333	chr16:28877662-28877918(+)$1	256	196	225	8.9004
iiiiiiiieeeeepppppppeeeeegggg	chr3:49050518-49050775(+)$1	257	135	164	13.8435
c[ccc!!a[eeeeeooooooeeeee]a22	chr17:8108125-8108363(-)$1	238	187	216	8.7093
==========[bbpppppppbb]======	chr7:150935432-150935656(+)$1	224	116	145	16.3775
hhhhh[gggggggqqqqqqqqgggggggh	chr22:20073777-20074035(+)$1	258	171	200	8.5108
gggccc!!eeeeepppppppeeeee22cc	chr19:46142015-46142254(-)$1	239	98	127	12.7435
ooooeeeeeddddpppppppddddeeeee	chr15:65578581-65578821(-)$1	240	167	196	10.0936
==========[bbpppppppbb]======	chr7:150935484-150935694(+)$1	210	64	93	16.3775
:ffffff!!a[bbqqqqqqqqbb333a22	chr22:20073731-20073977(+)$1	246	0	29	8.1644
dddd[a[bb[cccooooooccc]bb]add	chr17:30800858-30801064(+)$1	206	76	105	7.2029
ccccccgggggggqqqqqqqqggggggg:	chr19:18112274-18112507(+)$1	233	59	88	8.3235
==========[bbpppppppbb]======	chr7:150935497-150935708(+)$1	211	51	80	16.3775
==========[bbpppppppbb]======	chr7:150935327-150935617(+)$1	290	221	250	16.3775
geeeeea!!ddddpppppppdddd22a::	chrX:48814219-48814460(-)$1	241	209	238	9.6230

#otherMatches

#Seq PSSM
GGGCUGGAGGUGAUGGAUGUUUUCCUCCG	chr7:150935456-150935682(+)$1	226	92	121	16.3775
CCGGGGUUGGCGCGGUUGGCGGGGGCAGU	chrX:48814285-48814537(-)$1	252	171	200	10.1332
GGCUGCUGUUUGGCGGAGCCGGCGGCAGC	chr12:62996797-62997070(+)$1	273	31	60	9.5102
CGCCUCCUCAUAGACCCGAACUGUAGUGG	chr22:20073654-20073903(+)$1	249	81	110	11.5678
UGUCCCUUUGGCGGGAGUGUUGGUGACGG	chr22:20073867-20074168(+)$1	301	102	131	8.6740
UGCAGCAAUUGACCAAGUAUGUCUUUUUU	chr17:30801680-30801883(+)$1	203	67	96	11.8526
CAGAGGGGCCCGGGGAAAGCCGGCCUCAC	chr1:156389923-156390193(-)$1	270	70	99	7.4128
GGCCGGGUGCUGCUGGAGGCGGCGGCGCC	chr19:18111975-18112272(+)$1	297	232	261	7.1412
UGUUCGCCGAGGCGCUGCAGGCCUAUGGG	chr22:21983337-21983582(-)$1	245	118	147	12.0207
CUACCUGGCGGCCCGAGCCCGGCUGGCAG	chr7:150935266-150935514(+)$1	248	215	244	11.0824
ACCGCCGCUUUUCUCUCUUCAGAGCGGUG	chr12:62997009-62997281(+)$1	272	180	209	14.4662
CUCAGCCCCGAGGCCAAGUCCCUGCUUGC	chr19:40741696-40741934(-)$1	238	79	108	13.7381
cggagccggcgggggccgagguggccggg	chr9:101558592-101558800(-)$1	208	166	195	11.9514
CUGCCCCGGCUGGAAGAGGACCAGCGGGC	chr9:139563966-139564209(+)$1	243	157	186	10.3495
CAAUGUUGUGUUUUCUGCUUCAUACGAUA	chr12:69135560-69135827(+)$1	267	93	122	11.6201
CUCCUUAGAGUUGGAAUGGUAAACUUUGA	chr9:101558279-101558523(-)$1	244	213	242	13.2805
ACGGGCUUCCAGUUUUACUACCUGCCGGC	chr3:152553507-152553757(+)$1	250	202	231	7.2919
ccaccgccCGGUCUGUCCCCUCGGGCUCC	chr17:46655280-46655515(-)$1	235	86	115	10.3750
GGCUGCUGUUUGGCGGAGCCGGCGGCAGC	chr12:62996679-62996961(+)$1	282	149	178	9.5102
GGGCUGGAGGUGAUGGAUGUUUUCCUCCG	chr7:150935513-150935736(+)$1	223	35	64	16.3775
AGCUGGCGGGCCUGGUGGAGAGCGUGCGG	chr1:248020672-248020920(+)$1	248	96	125	11.6658
UGUCCCUUUGGCGGGAGUGUUGGUGACGG	chr22:20073835-20074067(+)$1	232	134	163	8.6740
CUGUGGCUGAGGGGCAGGAACAAUGCAGC	chr17:80211014-80211280(-)$1	266	48	77	10.0249
cgacggccgcggcagcccuggcggcggcC	chr10:70287015-70287285(-)$1	270	163	192	12.9152
GCCGGGAAGCGAACCCCAACCUUUCGUCC	chr13:47127534-47127781(+)$1	247	5	34	10.8213
CGUGGAUUGCUCGGACGAGGCGGGCAACA	chr9:101558330-101558587(-)$1	257	23	52	12.1568
CAGCAGCAUGAGCAGUGUCAGCUCGGUCC	chr3:15123984-15124247(-)$1	263	226	255	13.3339
UGCAGCAAUUGACCAAGUAUGUCUUUUUU	chr17:30801683-30801914(+)$1	231	64	93	11.8526
CGUGGAUUGCUCGGACGAGGCGGGCAACA	chr9:101558488-101558740(-)$1	252	176	205	12.9837
AGUUCGAGGCGGGGGAGGCAGCCUCGGGC	chr5:154135214-154135449(+)$1	235	41	70	8.8804
CGCCCAGGAUGACUCAAGAUGCCACCUGG	chr22:46505757-46506000(+)$1	243	2	31	11.9496
UACCACAGCUGUGCUGACCCCACUGGCUG	chr9:140006577-140006827(-)$1	250	198	227	10.5647
GCUCAAGAAGCGCUUUUCCCUGCGUUCAG	chr16:28877662-28877918(+)$1	256	196	225	8.9004
CUGCCCUCUCUGCACGGGAAGCAGGGUGU	chr3:49050518-49050775(+)$1	257	135	164	13.8435
UUCACUCGGGUGCGUGUGUUUGUAUGUCU	chr17:8108125-8108363(-)$1	238	187	216	8.7093
GGGCUGGAGGUGAUGGAUGUUUUCCUCCG	chr7:150935432-150935656(+)$1	224	116	145	16.3775
GUCAGUGGGGACGUGCAUGCUUGUCCCUU	chr22:20073777-20074035(+)$1	258	171	200	8.5108
UUUUUUCUUUGUCCUUUCCUGACAGCAAA	chr19:46142015-46142254(-)$1	239	98	127	12.7435
CUCGGUGCUGCGGCCCUUCCCCGCGUCCU	chr15:65578581-65578821(-)$1	240	167	196	10.0936
GGGCUGGAGGUGAUGGAUGUUUUCCUCCG	chr7:150935484-150935694(+)$1	210	64	93	16.3775
GGGCCGCCUCCUCAUAGACCCGAACUGUA	chr22:20073731-20073977(+)$1	246	0	29	8.1644
AUGUUGCUGUGCAAAAUCAUGCUCAACAC	chr17:30800858-30801064(+)$1	206	76	105	7.2029
UACGCGGCCGCGGAGACCUACCUGCGGCG	chr19:18112274-18112507(+)$1	233	59	88	8.3235
GGGCUGGAGGUGAUGGAUGUUUUCCUCCG	chr7:150935497-150935708(+)$1	211	51	80	16.3775
GGGCUGGAGGUGAUGGAUGUUUUCCUCCG	chr7:150935327-150935617(+)$1	290	221	250	16.3775
CACUGUCGAGCAGGUAAGAGCUGUGGGGU	chrX:48814219-48814460(-)$1	241	209	238	9.6230

#DB
((((((((((.((.......)).))))))	chr7:150935456-150935682(+)$1	1	92	121	16.3775
..(((((((.(.(........).).))))	chrX:48814285-48814537(-)$1	1	171	200	10.1332
((((((((((.(((...))))))))))))	chr12:62996797-62997070(+)$1	1	31	60	9.5102
.(((..((.((((.......)))))).))	chr22:20073654-20073903(+)$1	1	81	110	11.5678
((((((.(((.(((.....))).))).))	chr22:20073867-20074168(+)$1	1	102	131	8.6740
(((((.((..(((.......)))..))..	chr17:30801680-30801883(+)$1	1	67	96	11.8526
(.(.((((((.((......)))))))).)	chr1:156389923-156390193(-)$1	1	70	99	7.4128
(((..((((((((((....))))))))))	chr19:18111975-18112272(+)$1	1	232	261	7.1412
(((.(.(((((((.......)))).))).	chr22:21983337-21983582(-)$1	1	118	147	12.0207
)((((((.(((((.......))))).)))	chr7:150935266-150935514(+)$1	1	215	244	11.0824
(((((((((((.........)))))))))	chr12:62997009-62997281(+)$1	1	180	209	14.4662
((((((....(((.......)))....))	chr19:40741696-40741934(-)$1	1	79	108	13.7381
(((..(((((.(.........).))))).	chr9:101558592-101558800(-)$1	1	166	195	11.9514
).((((..(((((.......)))))))))	chr9:139563966-139564209(+)$1	1	157	186	10.3495
.((((((((((..........))))))))	chr12:69135560-69135827(+)$1	1	93	122	11.6201
)))(((((((((.........))))))))	chr9:101558279-101558523(-)$1	1	213	242	13.2805
(.((((..((.((..........)).)).	chr3:152553507-152553757(+)$1	1	202	231	7.2919
(....((((((.........))))))...	chr17:46655280-46655515(-)$1	1	86	115	10.3750
((((((((((.(((...))))))))))))	chr12:62996679-62996961(+)$1	1	149	178	9.5102
((((((((((.((.......)).))))))	chr7:150935513-150935736(+)$1	1	35	64	16.3775
(((((.((.((((.......)).)).)).	chr1:248020672-248020920(+)$1	1	96	125	11.6658
((((((.(((.(((.....))).))).))	chr22:20073835-20074067(+)$1	1	134	163	8.6740
(.(((((((..(........)....))))	chr17:80211014-80211280(-)$1	1	48	77	10.0249
)))(((((((.((.......)).))))))	chr10:70287015-70287285(-)$1	1	163	192	12.9152
((((((..(((((.........)))))))	chr13:47127534-47127781(+)$1	1	5	34	10.8213
(((((.(((((((.......)))))))..	chr9:101558330-101558587(-)$1	1	23	52	12.1568
(..(((..(((((.......)))))...)	chr3:15123984-15124247(-)$1	1	226	255	13.3339
(((((.((..(((.......)))..))..	chr17:30801683-30801914(+)$1	1	64	93	11.8526
)((((.(((((((.......)))))))..	chr9:101558488-101558740(-)$1	1	176	205	12.9837
.(((((((((.(......).)))))))))	chr5:154135214-154135449(+)$1	1	41	70	8.8804
.(((((((.((.(.......).)))))))	chr22:46505757-46506000(+)$1	1	2	31	11.9496
).((.((((((((.......))).)))))	chr9:140006577-140006827(-)$1	1	198	227	10.5647
(((((...(((((........)))))...	chr16:28877662-28877918(+)$1	1	196	225	8.9004
))))))))(((((.......)))))((((	chr3:49050518-49050775(+)$1	1	135	164	13.8435
(.(((..(.(((((......))))).)..	chr17:8108125-8108363(-)$1	1	187	216	8.7093
((((((((((.((.......)).))))))	chr7:150935432-150935656(+)$1	1	116	145	16.3775
(((((.(((((((........))))))))	chr22:20073777-20074035(+)$1	1	171	200	8.5108
((((((..(((((.......)))))..))	chr19:46142015-46142254(-)$1	1	98	127	12.7435
....)))))((((.......))))(((((	chr15:65578581-65578821(-)$1	1	167	196	10.0936
((((((((((.((.......)).))))))	chr7:150935484-150935694(+)$1	1	64	93	16.3775
.((((((..(.((........))...)..	chr22:20073731-20073977(+)$1	1	0	29	8.1644
((((.(.((.(((......))).)).)))	chr17:30800858-30801064(+)$1	1	76	105	7.2029
))))))(((((((........))))))).	chr19:18112274-18112507(+)$1	1	59	88	8.3235
((((((((((.((.......)).))))))	chr7:150935497-150935708(+)$1	1	51	80	16.3775
((((((((((.((.......)).))))))	chr7:150935327-150935617(+)$1	1	221	250	16.3775
))))))(..((((.......))))..)..	chrX:48814219-48814460(-)$1	1	209	238	9.6230

#PSSM
= : 0.21	f : 0.10	e : 0.08	g : 0.08	c : 0.08	: : 0.06	[ : 0.04	a : 0.04	b : 0.04	d : 0.04	! : 0.02	C : 0.02	G : 0.02	D : 0.02	F : 0.02	i : 0.02	h : 0.02	o : 0.02	
= : 0.26	f : 0.10	[ : 0.08	e : 0.08	c : 0.06	g : 0.06	d : 0.06	! : 0.04	b : 0.04	: : 0.04	i : 0.04	# : 0.02	G : 0.02	h : 0.02	o : 0.02	
= : 0.26	g : 0.10	f : 0.10	d : 0.10	c : 0.08	e : 0.08	b : 0.06	i : 0.04	a : 0.02	# : 0.02	G : 0.02	! : 0.02	h : 0.02	o : 0.02	
= : 0.26	g : 0.10	c : 0.10	d : 0.10	f : 0.08	b : 0.06	i : 0.06	[ : 0.04	! : 0.04	e : 0.04	# : 0.02	h : 0.02	o : 0.02	
= : 0.26	g : 0.10	f : 0.10	d : 0.08	c : 0.08	! : 0.06	i : 0.06	e : 0.06	b : 0.04	[ : 0.04	a : 0.02	# : 0.02	h : 0.02	
= : 0.28	[ : 0.15	g : 0.10	f : 0.10	e : 0.08	i : 0.06	c : 0.06	! : 0.04	d : 0.04	" : 0.02	a : 0.02	
= : 0.23	g : 0.17	! : 0.13	b : 0.08	f : 0.08	[ : 0.06	e : 0.06	i : 0.06	c : 0.02	# : 0.02	" : 0.02	a : 0.02	
= : 0.23	g : 0.17	! : 0.15	b : 0.10	c : 0.06	e : 0.06	i : 0.06	f : 0.04	[ : 0.02	# : 0.02	" : 0.02	a : 0.02	
= : 0.23	e : 0.21	g : 0.15	[ : 0.08	! : 0.08	c : 0.06	f : 0.04	i : 0.04	b : 0.04	# : 0.02	
= : 0.23	e : 0.21	g : 0.10	d : 0.08	! : 0.06	b : 0.06	[ : 0.04	c : 0.04	f : 0.04	i : 0.04	# : 0.02	a : 0.02	
[ : 0.34	e : 0.17	c : 0.10	d : 0.08	g : 0.08	= : 0.06	b : 0.04	a : 0.02	i : 0.02	f : 0.02	! : 0.02	
b : 0.23	c : 0.19	e : 0.17	d : 0.08	g : 0.08	a : 0.06	[ : 0.04	r : 0.04	= : 0.02	s : 0.02	i : 0.02	
b : 0.23	c : 0.19	e : 0.17	d : 0.08	r : 0.08	g : 0.08	a : 0.04	= : 0.02	s : 0.02	q : 0.02	o : 0.02	
p : 0.52	q : 0.13	r : 0.10	c : 0.08	o : 0.06	s : 0.04	= : 0.02	e : 0.02	
p : 0.52	q : 0.13	r : 0.10	o : 0.08	l : 0.04	n : 0.04	s : 0.04	= : 0.02	
p : 0.52	q : 0.13	r : 0.10	o : 0.08	l : 0.04	n : 0.04	s : 0.04	m : 0.02	
p : 0.52	q : 0.13	r : 0.10	o : 0.08	l : 0.04	n : 0.04	s : 0.04	m : 0.02	
p : 0.52	q : 0.13	r : 0.10	o : 0.08	c : 0.04	n : 0.04	s : 0.04	m : 0.02	
p : 0.52	q : 0.13	r : 0.10	o : 0.06	c : 0.04	n : 0.04	s : 0.04	m : 0.02	a : 0.02	
p : 0.52	q : 0.13	c : 0.10	r : 0.10	s : 0.04	b : 0.02	= : 0.02	] : 0.02	o : 0.02	
b : 0.19	c : 0.15	e : 0.13	q : 0.10	= : 0.08	d : 0.08	r : 0.06	s : 0.04	a : 0.04	g : 0.04	f : 0.02	i : 0.02	
b : 0.19	c : 0.15	e : 0.15	= : 0.10	d : 0.08	g : 0.08	a : 0.04	f : 0.04	i : 0.04	s : 0.02	4 : 0.02	r : 0.02	] : 0.02	
] : 0.28	e : 0.17	= : 0.10	d : 0.08	c : 0.08	g : 0.08	f : 0.04	i : 0.04	b : 0.04	s : 0.02	4 : 0.02	
= : 0.23	e : 0.19	g : 0.10	d : 0.08	b : 0.08	c : 0.04	2 : 0.04	f : 0.04	4 : 0.04	i : 0.04	a : 0.02	] : 0.02	3 : 0.02	
= : 0.23	e : 0.23	g : 0.13	b : 0.08	2 : 0.06	] : 0.04	c : 0.04	f : 0.04	4 : 0.04	i : 0.04	3 : 0.02	
= : 0.23	g : 0.19	] : 0.10	e : 0.10	b : 0.06	c : 0.06	f : 0.04	i : 0.04	3 : 0.04	2 : 0.04	4 : 0.02	d : 0.02	
= : 0.23	g : 0.19	b : 0.08	e : 0.08	a : 0.08	] : 0.06	f : 0.04	4 : 0.04	i : 0.04	3 : 0.04	c : 0.02	d : 0.02	2 : 0.02	
= : 0.28	g : 0.17	3 : 0.08	2 : 0.08	c : 0.06	e : 0.06	f : 0.04	d : 0.04	i : 0.04	b : 0.04	] : 0.02	4 : 0.02	: : 0.02	
= : 0.28	g : 0.13	2 : 0.13	c : 0.06	3 : 0.06	] : 0.04	f : 0.04	d : 0.04	i : 0.04	e : 0.04	: : 0.04	a : 0.02	4 : 0.02	h : 0.02	

#score	522.182456005265
#seq	46
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_transcript_m1_run2.txt

#BEAR
b[ddddvvvvvvvvvvvvvddddbb22a	chr2:216251592-216251804(-)$1	212	28	56	23.2163
eee[cccwwwwwwwwwwwwwwccceeee	chr2:152279630-152279885(+)$1	255	2	30	22.6205
ggggggyyyyyyyyyyyyyyyygggggg	chr17:40721407-40721653(+)$1	246	135	163	22.8478
dffffffvvvvvvvvvvvvvffffff44	chr17:53374119-53374341(+)$1	222	23	51	22.2948
c[eeeeettttttttttteeeee]ccc]	chr16:28847943-28848232(+)$1	289	127	155	22.5029
b[bb[auuuuuuuuuuuua]bbbbbbee	chr17:29058848-29059123(+)$1	275	70	98	21.8769
g[a!!bbuuuuuuuuuuuubb22a]ggg	chr9:95012611-95012884(-)$1	273	201	229	24.0086
==!!cccuuuuuuuuuuuuccc======	chr10:7755202-7755453(+)$1	251	215	243	25.7187
c[ddddyyyyyyyyyyyyyyyydddd33	chrX:73494112-73494337(-)$1	225	60	88	22.5133
!!ddddvvvvvvvvvvvvvdddd22eee	chr1:213037223-213037482(+)$1	259	161	189	24.3134
iiiiiiiitttttttttttiiiiiiiii	chr5:134120306-134120532(+)$1	226	179	207	22.8817
f[cccwwwwwwwwwwwwwwccc4444ff	chr21:18940397-18940606(+)$1	209	116	144	23.9847
b[eeeeeyyyyyyyyyyyyyyyyeeeee	chr2:198284817-198285037(-)$1	220	27	55	21.3576
eeeeeyyyyyyyyyyyyyyyyeeeeeff	chr1:154227205-154227460(+)$1	255	82	110	21.8666
b[dddduuuuuuuuuuuudddd]bb555	chr18:12986731-12987033(+)$1	302	108	136	20.5570
d[cccxxxxxxxxxxxxxxxccc22ddd	chr11:62364746-62365006(-)$1	260	23	51	19.3222
gggggccctttttttttttccc]ggggg	chr2:29164222-29164469(+)$1	247	167	195	23.8425
ggggggguuuuuuuuuuuuggggggg]d	chr12:67687883-67688165(+)$1	282	39	67	24.5509
"""dddduuuuuuuuuuuudddd]dddd	chr2:191761188-191761462(+)$1	274	42	70	24.3511
fffffwwwwwwwwwwwwwwffffffeee	chr7:155573324-155573569(+)$1	245	88	116	22.2131
iiiiiiiuuuuuuuuuuuuiiiiiiiii	chr11:65190987-65191196(+)$1	209	72	100	24.7383
gggyyyyyyyyyyyyyyyyggggggg]d	chr13:107209927-107210192(-)$1	265	54	82	22.3678
e"""cccuuuuuuuuuuuuccc333eee	chr19:54972240-54972491(+)$1	251	167	195	25.5596
ddcccwwwwwwwwwwwwwwccc333ddd	chr20:31600495-31600702(+)$1	207	146	174	23.3877
[bb[cccvvvvvvvvvvvvvcccbbccc	chr11:63714300-63714560(+)$1	260	148	176	23.1454
[cccxxxxxxxxxxxxxxxccc4444dd	chr17:56586136-56586440(-)$1	304	83	111	19.3201
======vvvvvvvvvvvvv=========	chr6:150048184-150048448(-)$1	264	93	121	24.8437
ff[cccvvvvvvvvvvvvvccc22ffff	chr19:9529705-9529957(-)$1	252	19	47	23.8465
"""dddduuuuuuuuuuuudddd22fff	chr1:21323983-21324243(-)$1	260	169	197	24.5947
g:eeeeeuuuuuuuuuuuueeeeeeeee	chr6:117898486-117898745(-)$1	259	88	116	22.6446
b[cccbbuuuuuuuuuuuubb]ccc]bb	chr6:109590831-109591075(+)$1	244	28	56	23.4623
!!ddddvvvvvvvvvvvvvdddd22bb>	chr14:95660661-95660953(-)$1	292	154	182	23.5555
=======uuuuuuuuuuuu=========	chr17:66511129-66511415(+)$1	286	72	100	25.4021
ccc[ddddtttttttttttdddd22ccc	chr3:10320785-10321043(+)$1	258	191	219	22.5234
d[fffffftttttttttttffffff]dd	chr6:41566423-41566677(+)$1	254	167	195	21.7756
gggggggvvvvvvvvvvvvvggggggg]	chrX:70767568-70767779(+)$1	211	63	91	23.7379
cccddddtttttttttttdddd]ccc33	chr16:2809623-2809900(+)$1	277	25	53	22.8341
!!fffffftttttttttttffffffbb]	chr16:4927276-4927545(+)$1	269	142	170	21.7613
!!ddddwwwwwwwwwwwwwwdddd22ff	chr10:5010815-5011045(+)$1	230	102	130	23.4582
++++cccuuuuuuuuuuuuccc>>>>>>	chr2:170804278-170804540(+)$1	262	127	155	21.4182
!ddddwwwwwwwwwwwwwwddddbb333	chr11:65272014-65272225(+)$1	211	157	185	23.0408
a[ddddvvvvvvvvvvvvvdddd]a]bb	chr1:226053590-226053856(-)$1	266	116	144	23.6525
!!cccwwwwwwwwwwwwwwccc22ffff	chr2:61456775-61457044(-)$1	269	58	86	23.9174
ff"""bbtttttttttttbb333fffff	chr5:78908692-78908951(+)$1	259	52	80	21.8734
d[bbwwwwwwwwwwwwwwbbdddd333e	chr2:216245706-216245912(-)$1	206	52	80	21.2360
""ddddauuuuuuuuuuuua]ddddeee	chr6:160210186-160210438(-)$1	252	81	109	24.7929
###eeeeettttttttttteeeee22dd	chr6:56964131-56964396(+)$1	265	72	100	22.2362
gggggwwwwwwwwwwwwwwggggggg]d	chr20:34326865-34327120(-)$1	255	39	67	23.4792
!!bbcccuuuuuuuuuuuuccc]bbeee	chr14:24616253-24616507(-)$1	254	141	169	24.8159
ffff!!attttttttttta22ffffffg	chr16:70010704-70010928(-)$1	224	127	155	22.4516
iiiiiiivvvvvvvvvvvvviiiiiiii	chr3:30691373-30691620(+)$1	247	2	30	23.8460
====[ccctttttttttttccc======	chr13:92003170-92003423(+)$1	253	170	198	24.2990
gggggggvvvvvvvvvvvvvggggggg:	chrX:70767555-70767768(+)$1	213	76	104	22.7604
$$eeeeeuuuuuuuuuuuueeeee6666	chr16:58619262-58619511(-)$1	249	54	82	22.0022
""ddddauuuuuuuuuuuua]ddddeee	chr6:160210238-160210447(-)$1	209	90	118	24.7929
ffff!!attttttttttta22ffffffg	chr16:70010686-70010902(-)$1	216	101	129	22.4516
[ccc!!bbtttttttttttbb]ccc22e	chr20:34214157-34214415(-)$1	258	84	112	22.3900
!ccccccuuuuuuuuuuuuccc]ccc22	chr20:61536837-61537065(-)$1	228	116	144	24.9143
"""ddddtttttttttttdddd333ccc	chr13:47286538-47286808(+)$1	270	228	256	23.5595
!!bbcccuuuuuuuuuuuuccc]bbeee	chr14:24616307-24616538(-)$1	231	172	200	24.8159
ggggggguuuuuuuuuuuuggggggg]d	chr11:65198417-65198669(+)$1	252	164	192	24.5509
fdddd[bbtttttttttttbbddddeee	chr3:9516639-9516888(+)$1	249	159	187	21.7149
!!cccxxxxxxxxxxxxxxxccc]eeee	chr19:5237140-5237413(-)$1	273	62	90	20.0653
ggggggyyyyyyyyyyyyyyyygggggg	chr12:57883875-57884129(+)$1	254	138	166	22.8478

#otherMatches

#Seq PSSM
GAUGUACGUUAAUUUCCCCUACACCUUC	chr2:216251592-216251804(-)$1	212	28	56	23.2163
UUGAUGCUCAUUAUUUCCUUUGUACAGC	chr2:152279630-152279885(+)$1	255	2	30	22.6205
UUUUGCACAAGGAGAAGAAAAAGCAGGA	chr17:40721407-40721653(+)$1	246	135	163	22.8478
uucacacucccacuaaaagugugugaga	chr17:53374119-53374341(+)$1	222	23	51	22.2948
GCUCCCCUUCCACCCCCCGGGGAACUGA	chr16:28847943-28848232(+)$1	289	127	155	22.5029
CACGGCGGUGGGGGAGGGGGCGGCUCGG	chr17:29058848-29059123(+)$1	275	70	98	21.8769
GCCUAGCCACACUUCUCUAGCCUGACCC	chr9:95012611-95012884(-)$1	273	201	229	24.0086
AGGUCCCUCUUCAACCAAUGGGUUUUGG	chr10:7755202-7755453(+)$1	251	215	243	25.7187
GUGCUAUUUCAAACCCUAAAUUUGGCUU	chrX:73494112-73494337(-)$1	225	60	88	22.5133
ACUACAUUUAUUUUCACAUUGUGAAGGG	chr1:213037223-213037482(+)$1	259	161	189	24.3134
CAGGUAGACUCCUCGUGCAUCUAUCUGU	chr5:134120306-134120532(+)$1	226	179	207	22.8817
ucggcucacugcaagcuccgccucccag	chr21:18940397-18940606(+)$1	209	116	144	23.9847
GUUGAAGUCACAGAUGCCAUAUUCUUCA	chr2:198284817-198285037(-)$1	220	27	55	21.3576
UUCUGUUUUUUUUUUUUUUACCAGAAUG	chr1:154227205-154227460(+)$1	255	82	110	21.8666
uuccugucuucauuguuuCAGGUAUUUC	chr18:12986731-12987033(+)$1	302	108	136	20.5570
AUGGAUGUUUUCCUUCUUUCUCCUUUGG	chr11:62364746-62365006(-)$1	260	23	51	19.3222
UUUCAGAAACUUUCACACCUUCAUGGAA	chr2:29164222-29164469(+)$1	247	167	195	23.8425
uuuuaauuuuuuuuCUCUCAUUGAAAUG	chr12:67687883-67688165(+)$1	282	39	67	24.5509
AAAUUUCUGCAUCUACUUUGAAAGUUUG	chr2:191761188-191761462(+)$1	274	42	70	24.3511
AGCCUUGAGAACUCCACGUGGGCUGGGU	chr7:155573324-155573569(+)$1	245	88	116	22.2131
GUGUUGGGGACAACAUUGACCAACGCUU	chr11:65190987-65191196(+)$1	209	72	100	24.7383
AUGUAUUUUUCUUAUUAAUUGUUUGCCU	chr13:107209927-107210192(-)$1	265	54	82	22.3678
UUUUCUCUCUCUCUCUUUCGAGCUUGCA	chr19:54972240-54972491(+)$1	251	167	195	25.5596
CCACCUGAAAUUCAUUGCUGGUUUCGGA	chr20:31600495-31600702(+)$1	207	146	174	23.3877
AGUGUUCAAGAAAUAUGAUAGAAACGGG	chr11:63714300-63714560(+)$1	260	148	176	23.1454
UCCCUCGUCCCCCCACCCUGGGUCCCCA	chr17:56586136-56586440(-)$1	304	83	111	19.3201
CCUUUUCUUUUUUUCUCCCAGGAGGAAG	chr6:150048184-150048448(-)$1	264	93	121	24.8437
AGAAGUAGAAAGGGUGGUGGCUGACUGU	chr19:9529705-9529957(-)$1	252	19	47	23.8465
UCACUAUCACCCUUAACUAAUAGAUGGG	chr1:21323983-21324243(-)$1	260	169	197	24.5947
AAACUUUUUUCUUAUAUCUGAAGUCUGG	chr6:117898486-117898745(-)$1	259	88	116	22.6446
CUGGUGCUAUUUUUUAUCUGCUACUUGG	chr6:109590831-109591075(+)$1	244	28	56	23.4623
GCCCAGAGCUUUGAAAUUACUGGCAUGC	chr14:95660661-95660953(-)$1	292	154	182	23.5555
GAGGGAGAACUGAAUGAAAUUCCCUUAA	chr17:66511129-66511415(+)$1	286	72	100	25.4021
CUGAUUGGAACACAGAAAACCAGGACAG	chr3:10320785-10321043(+)$1	258	191	219	22.5234
CUGGGCGCCCCUAACCCCAGCGCCUCGG	chr6:41566423-41566677(+)$1	254	167	195	21.7756
GAGAAGGAAUAAUGAUAUCACCUUCUUC	chrX:70767568-70767779(+)$1	211	63	91	23.7379
ACUUCCCGCAGUCGGUAAGGGGUAGUCC	chr16:2809623-2809900(+)$1	277	25	53	22.8341
AUGCAGCGCCUCUCCCACACGCUGCGGU	chr16:4927276-4927545(+)$1	269	142	170	21.7613
AGCUAGUUUUAUUGUCAUAUCUAGACAG	chr10:5010815-5011045(+)$1	230	102	130	23.4582
AUCUGCCAGAGUUCACGACGGCCUAAAG	chr2:170804278-170804540(+)$1	262	127	155	21.4182
ACAGUCUUCAAGAAAUUAAACUGGCAAG	chr11:65272014-65272225(+)$1	211	157	185	23.0408
UGGGUAGGAAACCUGAGCAUACCGGCAC	chr1:226053590-226053856(-)$1	266	116	144	23.6525
GUUGAGUUUUUUCUCUUUAUCAUAAAAC	chr2:61456775-61457044(-)$1	269	58	86	23.9174
GGCUGCUGUACAUUUUGAAGAAUCUUAG	chr5:78908692-78908951(+)$1	259	52	80	21.8734
AUGCUUAUUUCACAACUUGCUUUUCACA	chr2:216245706-216245912(-)$1	206	52	80	21.2360
GUUUCUCUCCUUUACCUCCGCAGAAAGG	chr6:160210186-160210438(-)$1	252	81	109	24.7929
UGGAAUAAAAACUGCAAGCUUAUUGAUU	chr6:56964131-56964396(+)$1	265	72	100	22.2362
UAUAGCCUUCCAUGUUAAACUAUAAGUA	chr20:34326865-34327120(-)$1	255	39	67	23.4792
UGGCCGGCCCUAACCCCUCUCGAGCGAG	chr14:24616253-24616507(-)$1	254	141	169	24.8159
AGUGGAAGGGUGAUAUUAUGACACUGAU	chr16:70010704-70010928(-)$1	224	127	155	22.4516
CAGGAUGGAAGAUUUAAAAUUAUCCUGA	chr3:30691373-30691620(+)$1	247	2	30	23.8460
GCAGGUAGUGUUUAGUUAUCUACUGCAU	chr13:92003170-92003423(+)$1	253	170	198	24.2990
GAGAAGGAAUAAUGAUAUCACCUUCUUC	chrX:70767555-70767768(+)$1	213	76	104	22.7604
GUUUGUUUUUAAUUAGUAUAGCAGUUGU	chr16:58619262-58619511(-)$1	249	54	82	22.0022
GUUUCUCUCCUUUACCUCCGCAGAAAGG	chr6:160210238-160210447(-)$1	209	90	118	24.7929
AGUGGAAGGGUGAUAUUAUGACACUGAU	chr16:70010686-70010902(-)$1	216	101	129	22.4516
ACCACUGACUUUUCCCUUUUCUUGGCAG	chr20:34214157-34214415(-)$1	258	84	112	22.3900
UGGUAAGUAUUCGUAUUCUCUUCAUCCC	chr20:61536837-61537065(-)$1	228	116	144	24.9143
UAACUCAUUGCUUUCUCUUGAGCCUUUU	chr13:47286538-47286808(+)$1	270	228	256	23.5595
UGGCCGGCCCUAACCCCUCUCGAGCGAG	chr14:24616307-24616538(-)$1	231	172	200	24.8159
acuucauaucaguuaaaucaugaaguau	chr11:65198417-65198669(+)$1	252	164	192	24.5509
AAAGGAGCAACAGUUUACAGCCCUUCCA	chr3:9516639-9516888(+)$1	249	159	187	21.7149
AGGAGAACCGACAGCAAAGACUCAGGGC	chr19:5237140-5237413(-)$1	273	62	90	20.0653
GGUUCCAGACACUGAGUACCCAGGAACC	chr12:57883875-57884129(+)$1	254	138	166	22.8478

#DB
(.((((.............))))))..)	chr2:216251592-216251804(-)$1	1	28	56	23.2163
(((.(((..............)))))))	chr2:152279630-152279885(+)$1	1	2	30	22.6205
((((((................))))))	chr17:40721407-40721653(+)$1	1	135	163	22.8478
(((((((.............))))))..	chr17:53374119-53374341(+)$1	1	23	51	22.2948
(.(((((...........))))).))).	chr16:28847943-28848232(+)$1	1	127	155	22.5029
(.((.(............).))))))))	chr17:29058848-29059123(+)$1	1	70	98	21.8769
(.(..((............))..).)))	chr9:95012611-95012884(-)$1	1	201	229	24.0086
((..(((............)))))))))	chr10:7755202-7755453(+)$1	1	215	243	25.7187
(.((((................))))..	chrX:73494112-73494337(-)$1	1	60	88	22.5133
..((((.............))))..)))	chr1:213037223-213037482(+)$1	1	161	189	24.3134
((((((((...........)))))))))	chr5:134120306-134120532(+)$1	1	179	207	22.8817
(.(((..............)))....))	chr21:18940397-18940606(+)$1	1	116	144	23.9847
(.(((((................)))))	chr2:198284817-198285037(-)$1	1	27	55	21.3576
(((((................)))))((	chr1:154227205-154227460(+)$1	1	82	110	21.8666
(.((((............)))).))...	chr18:12986731-12987033(+)$1	1	108	136	20.5570
(.(((...............)))..)))	chr11:62364746-62365006(-)$1	1	23	51	19.3222
((((((((...........))).)))))	chr2:29164222-29164469(+)$1	1	167	195	23.8425
(((((((............))))))).)	chr12:67687883-67688165(+)$1	1	39	67	24.5509
...((((............)))).))))	chr2:191761188-191761462(+)$1	1	42	70	24.3511
(((((..............)))))))))	chr7:155573324-155573569(+)$1	1	88	116	22.2131
(((((((............)))))))))	chr11:65190987-65191196(+)$1	1	72	100	24.7383
(((................))))))).)	chr13:107209927-107210192(-)$1	1	54	82	22.3678
(...(((............)))...)))	chr19:54972240-54972491(+)$1	1	167	195	25.5596
(((((..............)))...)))	chr20:31600495-31600702(+)$1	1	146	174	23.3877
.((.(((.............))))))))	chr11:63714300-63714560(+)$1	1	148	176	23.1454
.(((...............)))....))	chr17:56586136-56586440(-)$1	1	83	111	19.3201
((((((.............)))))))))	chr6:150048184-150048448(-)$1	1	93	121	24.8437
((.(((.............)))..))))	chr19:9529705-9529957(-)$1	1	19	47	23.8465
...((((............))))..)))	chr1:21323983-21324243(-)$1	1	169	197	24.5947
).(((((............)))))((((	chr6:117898486-117898745(-)$1	1	88	116	22.6446
(.(((((............)).))).))	chr6:109590831-109591075(+)$1	1	28	56	23.4623
..((((.............))))..)).	chr14:95660661-95660953(-)$1	1	154	182	23.5555
(((((((............)))))))))	chr17:66511129-66511415(+)$1	1	72	100	25.4021
(((.((((...........))))..)))	chr3:10320785-10321043(+)$1	1	191	219	22.5234
(.((((((...........)))))).))	chr6:41566423-41566677(+)$1	1	167	195	21.7756
(((((((.............))))))).	chrX:70767568-70767779(+)$1	1	63	91	23.7379
(((((((...........)))).)))..	chr16:2809623-2809900(+)$1	1	25	53	22.8341
..((((((...........)))))))).	chr16:4927276-4927545(+)$1	1	142	170	21.7613
..((((..............))))..))	chr10:5010815-5011045(+)$1	1	102	130	23.4582
....(((............)))......	chr2:170804278-170804540(+)$1	1	127	155	21.4182
.((((..............))))))...	chr11:65272014-65272225(+)$1	1	157	185	23.0408
(.((((.............)))).).))	chr1:226053590-226053856(-)$1	1	116	144	23.6525
..(((..............)))..))))	chr2:61456775-61457044(-)$1	1	58	86	23.9174
((...((...........))...)))))	chr5:78908692-78908951(+)$1	1	52	80	21.8734
(.((..............))))))...)	chr2:216245706-216245912(-)$1	1	52	80	21.2360
..(((((............).)))))))	chr6:160210186-160210438(-)$1	1	81	109	24.7929
...(((((...........)))))..))	chr6:56964131-56964396(+)$1	1	72	100	22.2362
(((((..............))))))).)	chr20:34326865-34327120(-)$1	1	39	67	23.4792
..(((((............))).)))))	chr14:24616253-24616507(-)$1	1	141	169	24.8159
((((..(...........)..)))))))	chr16:70010704-70010928(-)$1	1	127	155	22.4516
(((((((.............))))))))	chr3:30691373-30691620(+)$1	1	2	30	23.8460
((((.(((...........)))))))))	chr13:92003170-92003423(+)$1	1	170	198	24.2990
(((((((.............))))))).	chrX:70767555-70767768(+)$1	1	76	104	22.7604
..(((((............)))))....	chr16:58619262-58619511(-)$1	1	54	82	22.0022
..(((((............).)))))))	chr6:160210238-160210447(-)$1	1	90	118	24.7929
((((..(...........)..)))))))	chr16:70010686-70010902(-)$1	1	101	129	22.4516
.(((..((...........)).)))..)	chr20:34214157-34214415(-)$1	1	84	112	22.3900
.((((((............))).)))..	chr20:61536837-61537065(-)$1	1	116	144	24.9143
...((((...........))))...)))	chr13:47286538-47286808(+)$1	1	228	256	23.5595
..(((((............))).)))))	chr14:24616307-24616538(-)$1	1	172	200	24.8159
(((((((............))))))).)	chr11:65198417-65198669(+)$1	1	164	192	24.5509
)((((.((...........))))))(((	chr3:9516639-9516888(+)$1	1	159	187	21.7149
..(((...............))).))))	chr19:5237140-5237413(-)$1	1	62	90	20.0653
((((((................))))))	chr12:57883875-57884129(+)$1	1	138	166	22.8478

#PSSM
g : 0.17	! : 0.15	f : 0.10	b : 0.07	d : 0.07	" : 0.07	c : 0.06	= : 0.06	e : 0.04	i : 0.04	[ : 0.04	+ : 0.01	a : 0.01	# : 0.01	$ : 0.01	
[ : 0.20	g : 0.14	! : 0.12	f : 0.09	" : 0.09	c : 0.07	= : 0.06	i : 0.04	d : 0.04	e : 0.03	b : 0.01	: : 0.01	+ : 0.01	# : 0.01	$ : 0.01	
d : 0.17	c : 0.17	g : 0.14	e : 0.09	f : 0.09	b : 0.07	" : 0.07	i : 0.04	= : 0.04	a : 0.01	! : 0.01	[ : 0.01	+ : 0.01	# : 0.01	
d : 0.23	c : 0.15	g : 0.12	f : 0.09	e : 0.09	b : 0.06	[ : 0.04	i : 0.04	= : 0.04	! : 0.03	" : 0.03	y : 0.01	+ : 0.01	
d : 0.25	c : 0.23	g : 0.12	e : 0.09	f : 0.06	! : 0.06	i : 0.04	[ : 0.03	= : 0.03	y : 0.01	x : 0.01	" : 0.01	w : 0.01	
d : 0.21	c : 0.17	w : 0.10	g : 0.09	e : 0.07	f : 0.04	b : 0.04	i : 0.04	x : 0.04	! : 0.04	y : 0.03	= : 0.03	a : 0.01	[ : 0.01	
c : 0.15	w : 0.12	v : 0.09	y : 0.07	e : 0.07	b : 0.07	d : 0.07	g : 0.06	a : 0.06	f : 0.04	i : 0.04	x : 0.04	u : 0.03	= : 0.01	
u : 0.31	v : 0.17	w : 0.14	y : 0.09	t : 0.09	x : 0.04	c : 0.03	f : 0.03	b : 0.03	i : 0.01	d : 0.01	e : 0.01	
u : 0.31	t : 0.23	v : 0.17	w : 0.14	y : 0.09	x : 0.04	
u : 0.31	t : 0.23	v : 0.17	w : 0.14	y : 0.09	x : 0.04	
u : 0.31	t : 0.23	v : 0.17	w : 0.14	y : 0.09	x : 0.04	
u : 0.31	t : 0.23	v : 0.17	w : 0.14	y : 0.09	x : 0.04	
u : 0.31	t : 0.23	v : 0.17	w : 0.14	y : 0.09	x : 0.04	
u : 0.31	t : 0.23	v : 0.17	w : 0.14	y : 0.09	x : 0.04	
u : 0.31	t : 0.23	v : 0.17	w : 0.14	y : 0.09	x : 0.04	
u : 0.31	t : 0.23	v : 0.17	w : 0.14	y : 0.09	x : 0.04	
u : 0.31	t : 0.23	v : 0.17	w : 0.14	y : 0.09	x : 0.04	
u : 0.31	t : 0.23	v : 0.17	w : 0.14	y : 0.09	x : 0.04	
u : 0.28	v : 0.17	t : 0.14	w : 0.12	y : 0.09	a : 0.04	d : 0.04	x : 0.04	b : 0.03	e : 0.01	
c : 0.20	d : 0.17	b : 0.09	y : 0.07	v : 0.07	e : 0.06	g : 0.06	f : 0.04	w : 0.03	i : 0.03	x : 0.03	= : 0.03	a : 0.03	2 : 0.03	] : 0.01	
c : 0.25	d : 0.20	g : 0.09	y : 0.07	b : 0.07	f : 0.06	e : 0.06	i : 0.04	= : 0.03	] : 0.03	2 : 0.03	w : 0.01	3 : 0.01	
c : 0.26	d : 0.25	f : 0.09	g : 0.09	e : 0.07	y : 0.06	i : 0.04	= : 0.03	] : 0.03	b : 0.01	2 : 0.01	3 : 0.01	
d : 0.21	g : 0.12	c : 0.09	f : 0.09	] : 0.09	e : 0.07	= : 0.06	3 : 0.06	2 : 0.04	i : 0.04	4 : 0.03	b : 0.01	y : 0.01	> : 0.01	
g : 0.14	b : 0.10	f : 0.10	2 : 0.10	d : 0.09	c : 0.07	e : 0.07	] : 0.06	= : 0.06	i : 0.04	3 : 0.04	4 : 0.03	a : 0.01	> : 0.01	
g : 0.14	f : 0.14	b : 0.10	2 : 0.10	e : 0.07	c : 0.07	d : 0.07	= : 0.06	3 : 0.06	i : 0.04	4 : 0.03	] : 0.01	> : 0.01	a : 0.01	6 : 0.01	
e : 0.20	g : 0.15	f : 0.10	c : 0.09	2 : 0.06	= : 0.06	d : 0.06	b : 0.04	i : 0.04	] : 0.04	4 : 0.03	3 : 0.03	5 : 0.01	> : 0.01	6 : 0.01	
e : 0.20	f : 0.14	g : 0.09	d : 0.09	c : 0.06	= : 0.06	3 : 0.06	] : 0.06	b : 0.06	2 : 0.04	i : 0.04	4 : 0.01	5 : 0.01	> : 0.01	6 : 0.01	
e : 0.23	d : 0.15	f : 0.10	g : 0.09	= : 0.06	] : 0.04	3 : 0.04	i : 0.04	c : 0.04	b : 0.03	> : 0.03	a : 0.01	4 : 0.01	5 : 0.01	: : 0.01	6 : 0.01	2 : 0.01	

#score	1477.7273627102138
#seq	64
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_CDS_m2_run1.txt

#BEAR
[ddddddddmmmmdddd333ddddbb::HHHHHHHHMMMM	chr12:25361984-25362233(-)$1	249	15	55	28.8715
[bb"""ddddllldddd333bb]eeeeeHHHHHHHH}BB}	chr6:30550090-30550369(+)$1	279	186	226	31.7709

#otherMatches

#Seq PSSM
AUGAAUGUAAAGUUACACUGUUCACAAAGGUUUUGUCUCC	chr12:25361984-25362233(-)$1	249	15	55	28.8715
AAAAACAGGUAAGACCUUGGUUCUUAGCGGUCAAAAGUAG	chr6:30550090-30550369(+)$1	279	186	226	31.7709

#DB
.((((((((....))))...))))))..((((((((....	chr12:25361984-25362233(-)$1	1	15	55	28.8715
.((...((((...))))...)).))))))))))))).)).	chr6:30550090-30550369(+)$1	1	186	226	31.7709

#PSSM
[ : 1.00	
d : 0.50	b : 0.50	
d : 0.50	b : 0.50	
d : 0.50	" : 0.50	
d : 0.50	" : 0.50	
d : 0.50	" : 0.50	
d : 1.00	
d : 1.00	
d : 1.00	
m : 0.50	d : 0.50	
m : 0.50	l : 0.50	
m : 0.50	l : 0.50	
m : 0.50	l : 0.50	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
3 : 1.00	
3 : 1.00	
3 : 1.00	
d : 0.50	b : 0.50	
d : 0.50	b : 0.50	
d : 0.50	] : 0.50	
d : 0.50	e : 0.50	
b : 0.50	e : 0.50	
b : 0.50	e : 0.50	
: : 0.50	e : 0.50	
: : 0.50	e : 0.50	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
M : 0.50	} : 0.50	
M : 0.50	B : 0.50	
M : 0.50	B : 0.50	
M : 0.50	} : 0.50	

#score	60.64252641799999
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_UTR_m2_run1.txt

#BEAR
ddddtttttttttttdddd2	chr7:2883609-2883945(-)$1	336	248	268	23.0894
eeeettttttttttteeeee	chr11:2152662-2152866(-)$1	204	107	127	24.7833
eeeettttttttttteeeee	chr11:2152657-2152862(-)$1	205	103	123	24.7833
eeeettttttttttteeeee	chr11:2152728-2152951(-)$1	223	192	212	24.7833
ddddvvvvvvvvvvvvvddd	chr20:32581607-32581873(+)$1	266	148	168	21.7825
eeeettttttttttteeeee	chr11:2152617-2152822(-)$1	205	63	83	24.7833
ffffuuuuuuuuuuuuffff	chr20:39766141-39766435(+)$1	294	246	266	21.6691
eeeettttttttttteeeee	chr11:2152545-2152781(-)$1	236	22	42	24.7833
dddduuuuuuuuuuuudddd	chr5:179135194-179135440(+)$1	246	120	140	22.5688
!!bbuuuuuuuuuuuubb33	chr12:56510448-56510689(+)$1	241	177	197	21.1753
d[bbtttttttttttbb]dd	chrX:152953807-152954114(+)$1	307	162	182	22.3675
ddddtttttttttttdddd:	chr16:87865846-87866093(-)$1	247	214	234	22.3356
eeeettttttttttteeeee	chr11:2152652-2152857(-)$1	205	98	118	24.7833
a[bbtttttttttttbb]a4	chr12:49350987-49351329(-)$1	342	90	110	22.0022
eeeettttttttttteeeee	chr12:7024844-7025099(+)$1	255	84	104	24.7833
ggggtttttttttttggggg	chr7:99621088-99621374(+)$1	286	153	173	22.6555
eeeettttttttttteeeee	chr11:2152615-2152817(-)$1	202	58	78	24.7833
eeeevvvvvvvvvvvvveee	chr9:117062253-117062502(+)$1	249	215	235	22.9239
eeeettttttttttteeeee	chr11:2152682-2152888(-)$1	206	129	149	24.7833
!cccyyyyyyyyyyyyyyyy	chr9:117054291-117054584(+)$1	293	66	86	19.0384
eeeettttttttttteeeee	chr11:2152448-2152662(-)$1	214	41	61	24.7833
eewwwwwwwwwwwwwweeee	chrX:152953545-152953898(+)$1	353	255	275	20.4076
"bbuuuuuuuuuuuubb333	chr11:2153201-2153405(-)$1	204	121	141	20.1301
c[bbvvvvvvvvvvvvvbbc	chr6:30545762-30546056(+)$1	294	84	104	20.2729
:ccctttttttttttccc::	chr19:49994678-49994904(+)$1	226	193	213	19.7080
eeeettttttttttteeeee	chr11:2152688-2152909(-)$1	221	150	170	24.7833
ffffuuuuuuuuuuuuffff	chr6:117996575-117996882(+)$1	307	50	70	21.6691
eeeettttttttttteeeee	chr11:2152635-2152848(-)$1	213	89	109	24.7833
ddbbtttttttttttbb]dd	chr17:42276862-42277120(-)$1	258	156	176	22.4111
eeeevvvvvvvvvvvvveee	chr12:111180423-111180683(-)$1	260	98	118	22.9239
ddddtttttttttttddddd	chr17:27420233-27420531(-)$1	298	162	182	23.3310
====uuuuuuuuuuuu====	chr11:2152357-2152565(-)$1	208	133	153	22.1865
e[bbtttttttttttbbeee	chr15:72500985-72501335(-)$1	350	14	34	23.1671
dddduuuuuuuuuuuudddd	chr9:136242772-136243050(-)$1	278	0	20	22.5688
ffffuuuuuuuuuuuuffff	chr20:43029803-43030042(+)$1	239	36	56	21.6691
eeeettttttttttteeeee	chr11:2152581-2152786(-)$1	205	27	47	24.7833
dddduuuuuuuuuuuudddd	chr17:79827603-79827920(-)$1	317	70	90	22.5688
fffftttttttttttfffff	chr3:194207218-194207513(-)$1	295	78	98	22.3901
eeeettttttttttteeeee	chr18:11981530-11981808(+)$1	278	106	126	24.7833
eeeettttttttttteeeee	chr11:2152622-2152828(-)$1	206	69	89	24.7833
eeeettttttttttteeeee	chr19:49994885-49995106(+)$1	221	157	177	24.7833
[ccctttttttttttccc]e	chr11:18424372-18424659(+)$1	287	246	266	22.8960
ddddtttttttttttdddd]	chr17:48784871-48785244(-)$1	373	184	204	23.3093
eeeettttttttttteeeee	chr11:2152666-2152876(-)$1	210	117	137	24.7833
fffftttttttttttfffff	chr18:19321232-19321519(+)$1	287	233	253	22.3901
eeeevvvvvvvvvvvvveee	chr14:24680591-24680908(-)$1	317	205	225	22.9239
eeeettttttttttteeeee	chr11:2152648-2152852(-)$1	204	93	113	24.7833
eeeettttttttttteeeee	chr11:2152709-2152913(-)$1	204	154	174	24.7833
dddduuuuuuuuuuuudddd	chr17:43163775-43164096(+)$1	321	28	48	22.5688
ddddvvvvvvvvvvvvvddd	chr10:102759453-102759750(+)$1	297	248	268	21.7825
====uuuuuuuuuuuu====	chr11:2152347-2152557(-)$1	210	125	145	22.1865
ddddtttttttttttdddd]	chr20:62694446-62694723(+)$1	277	226	246	23.3093

#otherMatches

#Seq PSSM
GCGCGAGGCCCGGAGGCGUA	chr7:2883609-2883945(-)$1	336	248	268	23.0894
CAUGCGCAGCACAUACAUGA	chr11:2152662-2152866(-)$1	204	107	127	24.7833
CAUGCGCAGCACAUACAUGA	chr11:2152657-2152862(-)$1	205	103	123	24.7833
CAUGCGCAGCACAUACAUGA	chr11:2152728-2152951(-)$1	223	192	212	24.7833
CAGCGGAACCCAGAGAAGCU	chr20:32581607-32581873(+)$1	266	148	168	21.7825
CAUGCGCAGCACAUACAUGA	chr11:2152617-2152822(-)$1	205	63	83	24.7833
CUUUGUUCUACUCCAAGAAG	chr20:39766141-39766435(+)$1	294	246	266	21.6691
CAUGCGCAGCACAUACAUGA	chr11:2152545-2152781(-)$1	236	22	42	24.7833
AGCAUCAUGCCAUCUCUGCU	chr5:179135194-179135440(+)$1	246	120	140	22.5688
GAGUAGUAGCGAGGAGACGA	chr12:56510448-56510689(+)$1	241	177	197	21.1753
ugaccgccgcccccCGUGAg	chrX:152953807-152954114(+)$1	307	162	182	22.3675
GGGGUGCCGGCAUCUCCCCU	chr16:87865846-87866093(-)$1	247	214	234	22.3356
CAUGCGCAGCACAUACAUGA	chr11:2152652-2152857(-)$1	205	98	118	24.7833
UGCUAGGUGGAGGGAAGGAA	chr12:49350987-49351329(-)$1	342	90	110	22.0022
GGCUCCACCCCUCUAAGCCU	chr12:7024844-7025099(+)$1	255	84	104	24.7833
GGGGGCAGGAUUCCACCCUA	chr7:99621088-99621374(+)$1	286	153	173	22.6555
CAUGCGCAGCACAUACAUGA	chr11:2152615-2152817(-)$1	202	58	78	24.7833
ucauucaacaaauauuuaug	chr9:117062253-117062502(+)$1	249	215	235	22.9239
CAUGCGCAGCACAUACAUGA	chr11:2152682-2152888(-)$1	206	129	149	24.7833
GUAAUUUUUUGUGUGUUUCU	chr9:117054291-117054584(+)$1	293	66	86	19.0384
UAUCUAAGCAACUACGAUAU	chr11:2152448-2152662(-)$1	214	41	61	24.7833
GAUUCUUCAGGCUCACUUUC	chrX:152953545-152953898(+)$1	353	255	275	20.4076
agcacacacacaaacgcaca	chr11:2153201-2153405(-)$1	204	121	141	20.1301
CAGCAGCAAAAAAAAAAGCG	chr6:30545762-30546056(+)$1	294	84	104	20.2729
ACAGAGUACUCUUAACUGGC	chr19:49994678-49994904(+)$1	226	193	213	19.7080
CAUGCGCAGCACAUACAUGA	chr11:2152688-2152909(-)$1	221	150	170	24.7833
GUCCAUGUACUACUGGGGGC	chr6:117996575-117996882(+)$1	307	50	70	21.6691
CAUGCGCAGCACAUACAUGA	chr11:2152635-2152848(-)$1	213	89	109	24.7833
GACCGACGGACAUGGGGCUC	chr17:42276862-42277120(-)$1	258	156	176	22.4111
GGGAAAGGAGGUGUGAGUcc	chr12:111180423-111180683(-)$1	260	98	118	22.9239
AGGGCAAGCUCGCCACCCUC	chr17:27420233-27420531(-)$1	298	162	182	23.3310
ACCCGUAGGGUGGGCGGGGU	chr11:2152357-2152565(-)$1	208	133	153	22.1865
CAGCUCACUGUCCUUGCGGG	chr15:72500985-72501335(-)$1	350	14	34	23.1671
GCGUGGCCCCUUUAAGACGC	chr9:136242772-136243050(-)$1	278	0	20	22.5688
CCUCCACCCCUUCACAGAGG	chr20:43029803-43030042(+)$1	239	36	56	21.6691
CAUGCGCAGCACAUACAUGA	chr11:2152581-2152786(-)$1	205	27	47	24.7833
CACCGUCCCGCCCACAGGUG	chr17:79827603-79827920(-)$1	317	70	90	22.5688
GGCCGAGGGCGAUGGGGCUG	chr3:194207218-194207513(-)$1	295	78	98	22.3901
GGCUGGAGGUGGAGGGGCCC	chr18:11981530-11981808(+)$1	278	106	126	24.7833
CAUGCGCAGCACAUACAUGA	chr11:2152622-2152828(-)$1	206	69	89	24.7833
GUCCUCAAGACCCACGGACU	chr19:49994885-49995106(+)$1	221	157	177	24.7833
AUUAUAUUAUUCAAUUAGAG	chr11:18424372-18424659(+)$1	287	246	266	22.8960
gggcggggcaggcgggccug	chr17:48784871-48785244(-)$1	373	184	204	23.3093
CAUGCGCAGCACAUACAUGA	chr11:2152666-2152876(-)$1	210	117	137	24.7833
GCCCAACUCCCUCACGGGCC	chr18:19321232-19321519(+)$1	287	233	253	22.3901
AUUGAGAAUGCCACUACCAA	chr14:24680591-24680908(-)$1	317	205	225	22.9239
CAUGCGCAGCACAUACAUGA	chr11:2152648-2152852(-)$1	204	93	113	24.7833
CAUGCGCAGCACAUACAUGA	chr11:2152709-2152913(-)$1	204	154	174	24.7833
UUGAACUCAUAAUUAAUCAA	chr17:43163775-43164096(+)$1	321	28	48	22.5688
CGGCGGAGGUGAGGGGGGCC	chr10:102759453-102759750(+)$1	297	248	268	21.7825
ACCCGUAGGGUGGGCGGGGU	chr11:2152347-2152557(-)$1	210	125	145	22.1865
GCAAGGAAGAGGAGAUUGCG	chr20:62694446-62694723(+)$1	277	226	246	23.3093

#DB
((((...........)))).	chr7:2883609-2883945(-)$1	1	248	268	23.0894
((((...........)))))	chr11:2152662-2152866(-)$1	1	107	127	24.7833
((((...........)))))	chr11:2152657-2152862(-)$1	1	103	123	24.7833
((((...........)))))	chr11:2152728-2152951(-)$1	1	192	212	24.7833
((((.............)))	chr20:32581607-32581873(+)$1	1	148	168	21.7825
((((...........)))))	chr11:2152617-2152822(-)$1	1	63	83	24.7833
((((............))))	chr20:39766141-39766435(+)$1	1	246	266	21.6691
((((...........)))))	chr11:2152545-2152781(-)$1	1	22	42	24.7833
((((............))))	chr5:179135194-179135440(+)$1	1	120	140	22.5688
..((............))..	chr12:56510448-56510689(+)$1	1	177	197	21.1753
(.((...........)).))	chrX:152953807-152954114(+)$1	1	162	182	22.3675
((((...........)))).	chr16:87865846-87866093(-)$1	1	214	234	22.3356
((((...........)))))	chr11:2152652-2152857(-)$1	1	98	118	24.7833
(.((...........)).).	chr12:49350987-49351329(-)$1	1	90	110	22.0022
((((...........)))))	chr12:7024844-7025099(+)$1	1	84	104	24.7833
((((...........)))))	chr7:99621088-99621374(+)$1	1	153	173	22.6555
((((...........)))))	chr11:2152615-2152817(-)$1	1	58	78	24.7833
((((.............)))	chr9:117062253-117062502(+)$1	1	215	235	22.9239
((((...........)))))	chr11:2152682-2152888(-)$1	1	129	149	24.7833
.(((................	chr9:117054291-117054584(+)$1	1	66	86	19.0384
((((...........)))))	chr11:2152448-2152662(-)$1	1	41	61	24.7833
((..............))))	chrX:152953545-152953898(+)$1	1	255	275	20.4076
.((............))...	chr11:2153201-2153405(-)$1	1	121	141	20.1301
(.((.............)))	chr6:30545762-30546056(+)$1	1	84	104	20.2729
.(((...........)))..	chr19:49994678-49994904(+)$1	1	193	213	19.7080
((((...........)))))	chr11:2152688-2152909(-)$1	1	150	170	24.7833
((((............))))	chr6:117996575-117996882(+)$1	1	50	70	21.6691
((((...........)))))	chr11:2152635-2152848(-)$1	1	89	109	24.7833
((((...........)).))	chr17:42276862-42277120(-)$1	1	156	176	22.4111
((((.............)))	chr12:111180423-111180683(-)$1	1	98	118	22.9239
((((...........)))))	chr17:27420233-27420531(-)$1	1	162	182	23.3310
((((............))))	chr11:2152357-2152565(-)$1	1	133	153	22.1865
(.((...........)))))	chr15:72500985-72501335(-)$1	1	14	34	23.1671
((((............))))	chr9:136242772-136243050(-)$1	1	0	20	22.5688
((((............))))	chr20:43029803-43030042(+)$1	1	36	56	21.6691
((((...........)))))	chr11:2152581-2152786(-)$1	1	27	47	24.7833
((((............))))	chr17:79827603-79827920(-)$1	1	70	90	22.5688
((((...........)))))	chr3:194207218-194207513(-)$1	1	78	98	22.3901
((((...........)))))	chr18:11981530-11981808(+)$1	1	106	126	24.7833
((((...........)))))	chr11:2152622-2152828(-)$1	1	69	89	24.7833
((((...........)))))	chr19:49994885-49995106(+)$1	1	157	177	24.7833
.(((...........))).)	chr11:18424372-18424659(+)$1	1	246	266	22.8960
((((...........)))).	chr17:48784871-48785244(-)$1	1	184	204	23.3093
((((...........)))))	chr11:2152666-2152876(-)$1	1	117	137	24.7833
((((...........)))))	chr18:19321232-19321519(+)$1	1	233	253	22.3901
((((.............)))	chr14:24680591-24680908(-)$1	1	205	225	22.9239
((((...........)))))	chr11:2152648-2152852(-)$1	1	93	113	24.7833
((((...........)))))	chr11:2152709-2152913(-)$1	1	154	174	24.7833
((((............))))	chr17:43163775-43164096(+)$1	1	28	48	22.5688
((((.............)))	chr10:102759453-102759750(+)$1	1	248	268	21.7825
((((............))))	chr11:2152347-2152557(-)$1	1	125	145	22.1865
((((...........)))).	chr20:62694446-62694723(+)$1	1	226	246	23.3093

#PSSM
e : 0.46	d : 0.24	f : 0.09	! : 0.03	= : 0.03	a : 0.01	g : 0.01	" : 0.01	c : 0.01	: : 0.01	[ : 0.01	
e : 0.44	d : 0.23	f : 0.09	[ : 0.07	c : 0.05	= : 0.03	! : 0.01	g : 0.01	b : 0.01	
e : 0.42	d : 0.21	b : 0.13	f : 0.09	c : 0.05	= : 0.03	g : 0.01	w : 0.01	
e : 0.42	d : 0.21	b : 0.11	f : 0.09	c : 0.05	= : 0.03	g : 0.01	w : 0.01	u : 0.01	
t : 0.63	u : 0.21	v : 0.11	y : 0.01	w : 0.01	
t : 0.63	u : 0.21	v : 0.11	y : 0.01	w : 0.01	
t : 0.63	u : 0.21	v : 0.11	y : 0.01	w : 0.01	
t : 0.63	u : 0.21	v : 0.11	y : 0.01	w : 0.01	
t : 0.63	u : 0.21	v : 0.11	y : 0.01	w : 0.01	
t : 0.63	u : 0.21	v : 0.11	y : 0.01	w : 0.01	
t : 0.63	u : 0.21	v : 0.11	y : 0.01	w : 0.01	
t : 0.63	u : 0.21	v : 0.11	y : 0.01	w : 0.01	
t : 0.63	u : 0.21	v : 0.11	y : 0.01	w : 0.01	
t : 0.63	u : 0.21	v : 0.11	y : 0.01	w : 0.01	
t : 0.63	u : 0.21	v : 0.11	y : 0.01	w : 0.01	
e : 0.36	u : 0.19	v : 0.11	d : 0.09	b : 0.09	c : 0.03	f : 0.03	g : 0.01	y : 0.01	w : 0.01	
e : 0.38	d : 0.17	v : 0.11	b : 0.11	f : 0.09	c : 0.03	= : 0.03	g : 0.01	y : 0.01	
e : 0.46	d : 0.21	f : 0.09	] : 0.05	b : 0.03	c : 0.03	= : 0.03	g : 0.01	y : 0.01	3 : 0.01	
e : 0.46	d : 0.24	f : 0.09	3 : 0.03	= : 0.03	a : 0.01	g : 0.01	y : 0.01	b : 0.01	: : 0.01	] : 0.01	
e : 0.48	d : 0.17	f : 0.09	3 : 0.03	: : 0.03	= : 0.03	] : 0.03	2 : 0.01	4 : 0.01	g : 0.01	y : 0.01	c : 0.01	

#score	1199.262981024621
#seq	52
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_UTR_m3_run1.txt

#BEAR
eeeee!!cccpppppppccc22eee	chr19:48281888-48282148(+)$1	260	58	83	15.3945
gggggg[cccpppppppcccggggg	chr3:184032266-184032492(+)$1	226	45	70	15.8472
ff[a!!ddddpppppppdddd333a	chr7:2702976-2703209(+)$1	233	48	73	17.0279
[dddd[ddddpppppppdddd]ddd	chr2:227663683-227663938(-)$1	255	22	47	15.8364
ddd[ffffffpppppppffffff]d	chr14:50360166-50360425(+)$1	259	191	216	13.5983
eeeee!!cccpppppppccc22eee	chr10:46089885-46090162(-)$1	277	223	248	15.3945
b[hhhhhhhhppppppphhhhhhhh	chr19:2456705-2457031(-)$1	326	298	323	12.9403
ffddddddddpppppppdddd]ddd	chr2:183902732-183903062(-)$1	330	58	83	15.4227
ggggg[ddddpppppppddddgggg	chr16:691848-692100(+)$1	252	87	112	16.3228
eeeee[ddddpppppppdddd]eee	chr19:3094345-3094649(+)$1	304	68	93	15.8622
a[ccc!!cccpppppppccc]ccca	chr9:140484608-140484961(-)$1	353	315	340	16.2213
d"""ccc[bbpppppppbb]ccc]d	chr4:113152983-113153240(+)$1	257	157	182	14.8775
f!!gggggggpppppppggggggg]	chr19:50015855-50016085(+)$1	230	26	51	15.3762
bb[dddd[bbpppppppbb]dddd2	chr1:167691286-167691578(+)$1	292	74	99	14.0885
"hhhhhhhhapppppppa]hhhhhh	chr19:18652676-18652906(-)$1	230	172	197	13.1373
cccddddcccpppppppccc]dddd	chr4:22517305-22517553(-)$1	248	5	30	15.2083
cc!!ddddrrrrrrrrrdddd333c	chr3:186330796-186331016(+)$1	220	43	68	13.0838
!iiiiiiiiipppppppiiiiiiii	chr14:39736359-39736670(+)$1	311	48	73	15.5780
cceeeee[bbpppppppbb]eeeee	chr2:20646866-20647104(+)$1	238	141	166	14.5184
ffffccccccpppppppccc22ccc	chr11:207199-207423(-)$1	224	150	175	15.2311
eee[ddddrrrrrrrrrdddd22ee	chr8:38325532-38325796(-)$1	264	51	76	11.9231
[bb[ffffffpppppppffffffbb	chr9:133710609-133710887(+)$1	278	230	255	13.1304
b"""ffffffpppppppffffff]b	chr1:184723617-184723914(-)$1	297	44	69	13.8526
!!gggggggapppppppa]gggggg	chr14:105995066-105995330(+)$1	264	91	116	15.3913
f[a"""ddddrrrrrrrrrdddda]	chr10:70320328-70320600(+)$1	272	86	111	12.0435
c[bb!!ddddpppppppdddd22bb	chr20:34287257-34287478(+)$1	221	109	134	15.8994
gggggbb[bbpppppppbb]bb]gg	chr14:92587883-92588130(-)$1	247	169	194	13.7570
b"""ddddrrrrrrrrrdddd4444	chr1:183604648-183604983(-)$1	335	72	97	12.4723
gg[a!!ddddrrrrrrrrrdddd22	chr6:33756717-33757005(-)$1	288	123	148	11.9845
!ccc[eeeeepppppppeeeee]cc	chr14:53162341-53162647(-)$1	306	185	210	15.8068
:ccc[eeeeepppppppeeeee]cc	chr9:125667328-125667628(-)$1	300	0	25	14.8871
cccc[eeeeepppppppeeeee]cc	chr7:150930306-150930577(+)$1	271	128	153	15.7639
ggg[bb[cccpppppppcccbb333	chr7:27702379-27702642(-)$1	263	144	169	15.1551
dddd[eeeeepppppppeeeee]dd	chr7:1199602-1199898(-)$1	296	6	31	14.9323
eee[cccabbpppppppbb22a]cc	chr14:77494466-77494786(-)$1	320	212	237	14.3945
==[bb[ddddpppppppdddd22bb	chr2:219575526-219575840(+)$1	314	86	111	15.8285
:ccc!!ddddpppppppdddd22cc	chr2:128848795-128849044(+)$1	249	13	38	15.9228
dddeeeeebbpppppppbb]eeeee	chr10:129924398-129924694(-)$1	296	158	183	14.1599
!!ccc[a[arrrrrrrrra]a]ccc	chr8:81398675-81398939(+)$1	264	181	206	12.2568
bb:gggggggpppppppgggggggf	chr1:220101671-220101977(-)$1	306	244	269	13.6741
EEccc[ddddpppppppdddd]ccc	chr16:67927079-67927375(+)$1	296	62	87	14.8606
ccc[a!!cccpppppppccc22a]c	chr19:1249788-1250062(+)$1	274	165	190	16.3277
d[ccceeeeepppppppeeeee]cc	chr2:241555760-241556001(+)$1	241	150	175	15.6687
d[bb[eeeeepppppppeeeeebbd	chr5:139027977-139028272(+)$1	295	125	150	14.3929
ha[ccc[cccpppppppccc333cc	chr6:116892511-116892836(+)$1	325	59	84	16.3962
cc"""eeeeepppppppeeeee333	chr9:130331008-130331280(-)$1	272	112	137	16.0893
eeeee[ddddpppppppdddd]eee	chr17:38599708-38599977(+)$1	269	71	96	15.8622
ggccc[ddddpppppppdddd]ccc	chr11:57282152-57282358(-)$1	206	133	158	16.6844
::dddd[cccpppppppccc333dd	chr18:47329092-47329324(-)$1	232	157	182	14.0259
========bbpppppppbb]=====	chr3:13461589-13461881(-)$1	292	182	207	15.5047
==========ppppppp========	chr17:63556070-63556315(-)$1	245	94	119	16.0089
e[eeeee[bbpppppppbb]eeeee	chr17:37026244-37026499(+)$1	255	91	116	14.5592
c[dddd[cccpppppppcccdddd]	chr17:30186019-30186362(-)$1	343	181	206	15.3582
]cccbbddddpppppppdddd]bb:	chr19:917371-917666(+)$1	295	146	171	14.1559
cc####ddddpppppppdddd4444	chr17:26696891-26697123(-)$1	232	150	175	16.6442
==$$$$$cccpppppppccc4444=	chr11:65381115-65381480(-)$1	365	149	174	15.2981
"a[bb[ddddpppppppdddd]bba	chrX:152990389-152990646(+)$1	257	12	37	15.7151
!a!!ddddrrrrrrrrrdddd]a22	chr9:34637476-34637791(-)$1	315	206	231	12.3817
a####eeeeepppppppeeeee22a	chr3:33481512-33481782(-)$1	270	173	198	15.5081

#otherMatches

#Seq PSSM
AGGUUCCCGCCGCACUCGCGCAGAC	chr19:48281888-48282148(+)$1	260	58	83	15.3945
GCCCCCUGCGCCGGUCACGUGGGGG	chr3:184032266-184032492(+)$1	226	45	70	15.8472
UUGUGCUGGUGUCUGGGACCAAAAA	chr7:2702976-2703209(+)$1	233	48	73	17.0279
GCCUCGGGAAUCGCUGCUUCCAGAG	chr2:227663683-227663938(-)$1	255	22	47	15.8364
CCGAGAGGCUUCGUUUCGGUUUCGC	chr14:50360166-50360425(+)$1	259	191	216	13.5983
CCUGGGGCCGGGCCGAGCGGAACCA	chr10:46089885-46090162(-)$1	277	223	248	15.3945
CUGGAGCUGGAGAACGACCGGCUCC	chr19:2456705-2457031(-)$1	326	298	323	12.9403
CCGCCGCGGCUCGCUCUGUCGCCGG	chr2:183902732-183903062(-)$1	330	58	83	15.4227
CCGGCGCAGGGGCCGGAUCUGGCCG	chr16:691848-692100(+)$1	252	87	112	16.3228
gcggcggcgcgggcugagugcggcc	chr19:3094345-3094649(+)$1	304	68	93	15.8622
GCGACCCGGCCCGUCUCGCCCGUCC	chr9:140484608-140484961(-)$1	353	315	340	16.2213
UCCUUGAACCCCAUUUCGGCUCGUG	chr4:113152983-113153240(+)$1	257	157	182	14.8775
GGAUGUUCUUGGAGUCAGGGAGCAG	chr19:50015855-50016085(+)$1	230	26	51	15.3762
cggcggcggcgacugcaguggcugg	chr1:167691286-167691578(+)$1	292	74	99	14.0885
CCGGGGUCCCACCGCUCGAGGACUU	chr19:18652676-18652906(-)$1	230	172	197	13.1373
GCGCCGGGGAAGGCCCGUCCUCCGG	chr4:22517305-22517553(-)$1	248	5	30	15.2083
UCCAUGGGUCUACCUUUCCCAGCAG	chr3:186330796-186331016(+)$1	220	43	68	13.0838
UGUGCGGGUCGGGCUCGGACCUGCG	chr14:39736359-39736670(+)$1	311	48	73	15.5780
CAGCGCGGCGAGACGCACGGUGCGC	chr2:20646866-20647104(+)$1	238	141	166	14.5184
GCAGGGCCGGGCCGAAACCGACGCC	chr11:207199-207423(-)$1	224	150	175	15.2311
CGGACGGGAGCCCUCCCCCCGCCCC	chr8:38325532-38325796(-)$1	264	51	76	11.9231
GAGAUCUGCCUGAAGCUGGUGGGCU	chr9:133710609-133710887(+)$1	278	230	255	13.1304
GCACGGCUAGCAGCCCCCUGGCCAC	chr1:184723617-184723914(-)$1	297	44	69	13.8526
cccggcggccgACCAUGGUGCUGCC	chr14:105995066-105995330(+)$1	264	91	116	15.3913
CGCGAGUUGGAAAGUUUGCCCGAGG	chr10:70320328-70320600(+)$1	272	86	111	12.0435
GAGCGAGGUGAGGUAGGCGCCGGGC	chr20:34287257-34287478(+)$1	221	109	134	15.8994
CGCCGCGACGAGGAUCACGGCGACG	chr14:92587883-92588130(-)$1	247	169	194	13.7570
GACGCCUCAGAGCGGAAGAGGGAAG	chr1:183604648-183604983(-)$1	335	72	97	12.4723
GUCGGACCUGGAACUGCGGCGGGAG	chr6:33756717-33757005(-)$1	288	123	148	11.9845
GUCGGUGCGUCAGCCUCACGCGGCG	chr14:53162341-53162647(-)$1	306	185	210	15.8068
GUCCGCCUCCGUGGUgaggaggagg	chr9:125667328-125667628(-)$1	300	0	25	14.8871
GACCGCUCCUGAGUGGGAGGAGGGG	chr7:150930306-150930577(+)$1	271	128	153	15.7639
GCGAGCCAGCCAGUCCCGCUGCACA	chr7:27702379-27702642(-)$1	263	144	169	15.1551
GCGGCCUGGCGGGAUUGGCCGGUCU	chr7:1199602-1199898(-)$1	296	6	31	14.9323
GGGGGUCCCCGGGGAGAGGAAGAGA	chr14:77494466-77494786(-)$1	320	212	237	14.3945
CGGCAGCGGCGCUGGCGGCCGAGUG	chr2:219575526-219575840(+)$1	314	86	111	15.8285
UCGAGCCGCGGGAAAGGCGCGUGUC	chr2:128848795-128849044(+)$1	249	13	38	15.9228
GCCGGGGUGCAGCGAACGCGACCCC	chr10:129924398-129924694(-)$1	296	158	183	14.1599
gacgcgugcagcagacccgggagcg	chr8:81398675-81398939(+)$1	264	181	206	12.2568
UCACCGUCGCCUUCUUCGUGGCGGA	chr1:220101671-220101977(-)$1	306	244	269	13.6741
GCGCGCUGUGAUGACGCCACGACGC	chr16:67927079-67927375(+)$1	296	62	87	14.8606
GGCAGACGGCACCCAGCGCCACCAG	chr19:1249788-1250062(+)$1	274	165	190	16.3277
auacuucaccagauucaggugagag	chr2:241555760-241556001(+)$1	241	150	175	15.6687
GCGCCGCCUGCUGAGUCCGGGCGCC	chr5:139027977-139028272(+)$1	295	125	150	14.3929
GCGCGGAGCUGCAGUUAAGCAAGCC	chr6:116892511-116892836(+)$1	325	59	84	16.3962
CGACACCUCCUGGCCAUGGGGGACG	chr9:130331008-130331280(-)$1	272	112	137	16.0893
CAGGCUUGCUCCCCUCCGGCACGCC	chr17:38599708-38599977(+)$1	269	71	96	15.8622
GAACCGAGGAGAGCCCGUCCUGGGU	chr11:57282152-57282358(-)$1	206	133	158	16.6844
AAAGACUUCACUGCUACUGACUUGU	chr18:47329092-47329324(-)$1	232	157	182	14.0259
CUGCUGACGCUGUCGGUGCUGUUGG	chr3:13461589-13461881(-)$1	292	182	207	15.5047
cucggggcgcUGCUGGCGUGUCCCG	chr17:63556070-63556315(-)$1	245	94	119	16.0089
UCGCUGCUGCCUGUGUAGUUGCAGC	chr17:37026244-37026499(+)$1	255	91	116	14.5592
ccgcggagccgucucggggcccgcc	chr17:30186019-30186362(-)$1	343	181	206	15.3582
ACGUCCGGACCCAACGCGUCCUGGG	chr19:917371-917666(+)$1	295	146	171	14.1559
CUAUACGGCUGAGUGCAAGCCCCAA	chr17:26696891-26697123(-)$1	232	150	175	16.6442
CCGGAUGCCCAGGUUCCGGGACUAG	chr11:65381115-65381480(-)$1	365	149	174	15.2981
agaggaagagACGCCCCCUCUGCCC	chrX:152990389-152990646(+)$1	257	12	37	15.7151
UCCAGCGCGAAGAGAUAGCGCAGUU	chr9:34637476-34637791(-)$1	315	206	231	12.3817
cggcggcgccggcaugaggcgcagg	chr3:33481512-33481782(-)$1	270	173	198	15.5081

#DB
(((((..(((.......)))..)))	chr19:48281888-48282148(+)$1	1	58	83	15.3945
((((((.(((.......))))))))	chr3:184032266-184032492(+)$1	1	45	70	15.8472
((.(..((((.......))))...)	chr7:2702976-2703209(+)$1	1	48	73	17.0279
.((((.((((.......)))).)))	chr2:227663683-227663938(-)$1	1	22	47	15.8364
(((.((((((.......)))))).)	chr14:50360166-50360425(+)$1	1	191	216	13.5983
(((((..(((.......)))..)))	chr10:46089885-46090162(-)$1	1	223	248	15.3945
(.((((((((.......))))))))	chr19:2456705-2457031(-)$1	1	298	323	12.9403
))((((((((.......)))).)))	chr2:183902732-183903062(-)$1	1	58	83	15.4227
(((((.((((.......))))))))	chr16:691848-692100(+)$1	1	87	112	16.3228
(((((.((((.......)))).)))	chr19:3094345-3094649(+)$1	1	68	93	15.8622
(.(((..(((.......))).))))	chr9:140484608-140484961(-)$1	1	315	340	16.2213
(...(((.((.......)).))).)	chr4:113152983-113153240(+)$1	1	157	182	14.8775
(..(((((((.......))))))).	chr19:50015855-50016085(+)$1	1	26	51	15.3762
((.((((.((.......)).)))).	chr1:167691286-167691578(+)$1	1	74	99	14.0885
.(((((((((.......).))))))	chr19:18652676-18652906(-)$1	1	172	197	13.1373
((((((((((.......))).))))	chr4:22517305-22517553(-)$1	1	5	30	15.2083
((..((((.........))))...)	chr3:186330796-186331016(+)$1	1	43	68	13.0838
.(((((((((.......))))))))	chr14:39736359-39736670(+)$1	1	48	73	15.5780
(((((((.((.......)).)))))	chr2:20646866-20647104(+)$1	1	141	166	14.5184
((((((((((.......)))..)))	chr11:207199-207423(-)$1	1	150	175	15.2311
(((.((((.........))))..))	chr8:38325532-38325796(-)$1	1	51	76	11.9231
.((.((((((.......))))))))	chr9:133710609-133710887(+)$1	1	230	255	13.1304
(...((((((.......)))))).)	chr1:184723617-184723914(-)$1	1	44	69	13.8526
..((((((((.......).))))))	chr14:105995066-105995330(+)$1	1	91	116	15.3913
(.(...((((.........))))).	chr10:70320328-70320600(+)$1	1	86	111	12.0435
(.((..((((.......))))..))	chr20:34287257-34287478(+)$1	1	109	134	15.8994
(((((((.((.......)).)).))	chr14:92587883-92588130(-)$1	1	169	194	13.7570
(...((((.........))))....	chr1:183604648-183604983(-)$1	1	72	97	12.4723
((.(..((((.........))))..	chr6:33756717-33757005(-)$1	1	123	148	11.9845
.(((.(((((.......))))).))	chr14:53162341-53162647(-)$1	1	185	210	15.8068
.(((.(((((.......))))).))	chr9:125667328-125667628(-)$1	1	0	25	14.8871
((((.(((((.......))))).))	chr7:150930306-150930577(+)$1	1	128	153	15.7639
(((.((.(((.......)))))...	chr7:27702379-27702642(-)$1	1	144	169	15.1551
((((.(((((.......))))).))	chr7:1199602-1199898(-)$1	1	6	31	14.9323
(((.((((((.......))..).))	chr14:77494466-77494786(-)$1	1	212	237	14.3945
((.((.((((.......))))..))	chr2:219575526-219575840(+)$1	1	86	111	15.8285
.(((..((((.......))))..))	chr2:128848795-128849044(+)$1	1	13	38	15.9228
)))(((((((.......)).)))))	chr10:129924398-129924694(-)$1	1	158	183	14.1599
..(((.(.(.........).).)))	chr8:81398675-81398939(+)$1	1	181	206	12.2568
)).(((((((.......)))))))(	chr1:220101671-220101977(-)$1	1	244	269	13.6741
(((((.((((.......)))).)))	chr16:67927079-67927375(+)$1	1	62	87	14.8606
(((.(..(((.......)))..).)	chr19:1249788-1250062(+)$1	1	165	190	16.3277
(.((((((((.......))))).))	chr2:241555760-241556001(+)$1	1	150	175	15.6687
(.((.(((((.......))))))))	chr5:139027977-139028272(+)$1	1	125	150	14.3929
((.(((.(((.......)))...))	chr6:116892511-116892836(+)$1	1	59	84	16.3962
((...(((((.......)))))...	chr9:130331008-130331280(-)$1	1	112	137	16.0893
(((((.((((.......)))).)))	chr17:38599708-38599977(+)$1	1	71	96	15.8622
(((((.((((.......)))).)))	chr11:57282152-57282358(-)$1	1	133	158	16.6844
..((((.(((.......)))...))	chr18:47329092-47329324(-)$1	1	157	182	14.0259
((((((((((.......)).)))))	chr3:13461589-13461881(-)$1	1	182	207	15.5047
((((((((((.......))))))))	chr17:63556070-63556315(-)$1	1	94	119	16.0089
(.(((((.((.......)).)))))	chr17:37026244-37026499(+)$1	1	91	116	14.5592
(.((((.(((.......))))))).	chr17:30186019-30186362(-)$1	1	181	206	15.3582
.)))((((((.......)))).)).	chr19:917371-917666(+)$1	1	146	171	14.1559
((....((((.......))))....	chr17:26696891-26697123(-)$1	1	150	175	16.6442
((.....(((.......)))....)	chr11:65381115-65381480(-)$1	1	149	174	15.2981
.(.((.((((.......)))).)))	chrX:152990389-152990646(+)$1	1	12	37	15.7151
.(..((((.........)))).)..	chr9:34637476-34637791(-)$1	1	206	231	12.3817
(....(((((.......)))))..)	chr3:33481512-33481782(-)$1	1	173	198	15.5081

#PSSM
c : 0.15	e : 0.11	g : 0.10	d : 0.10	f : 0.08	b : 0.08	! : 0.08	= : 0.06	: : 0.05	[ : 0.03	a : 0.03	" : 0.03	E : 0.01	h : 0.01	] : 0.01	
c : 0.18	[ : 0.13	e : 0.10	g : 0.10	d : 0.06	= : 0.06	f : 0.05	" : 0.05	! : 0.05	b : 0.05	a : 0.05	h : 0.01	i : 0.01	E : 0.01	: : 0.01	# : 0.01	
c : 0.20	e : 0.13	d : 0.11	[ : 0.10	g : 0.08	" : 0.06	! : 0.05	b : 0.05	h : 0.03	= : 0.03	# : 0.03	i : 0.01	f : 0.01	a : 0.01	: : 0.01	$ : 0.01	
c : 0.18	e : 0.11	d : 0.11	g : 0.10	[ : 0.10	" : 0.08	b : 0.06	a : 0.03	h : 0.03	! : 0.03	= : 0.03	# : 0.03	i : 0.01	f : 0.01	$ : 0.01	
d : 0.16	c : 0.15	e : 0.11	g : 0.10	[ : 0.08	! : 0.06	b : 0.06	f : 0.05	h : 0.03	" : 0.03	= : 0.03	# : 0.03	i : 0.01	a : 0.01	$ : 0.01	
e : 0.18	[ : 0.15	d : 0.15	! : 0.13	g : 0.06	c : 0.06	f : 0.05	b : 0.05	h : 0.03	= : 0.03	i : 0.01	" : 0.01	# : 0.01	$ : 0.01	
d : 0.37	e : 0.18	[ : 0.08	! : 0.06	f : 0.05	c : 0.05	g : 0.05	h : 0.03	= : 0.03	i : 0.01	b : 0.01	a : 0.01	$ : 0.01	
d : 0.33	c : 0.20	e : 0.15	[ : 0.10	f : 0.05	g : 0.05	h : 0.03	= : 0.03	i : 0.01	a : 0.01	
d : 0.27	c : 0.20	b : 0.13	e : 0.13	r : 0.06	f : 0.05	g : 0.05	h : 0.03	i : 0.01	a : 0.01	= : 0.01	
d : 0.27	c : 0.20	b : 0.13	e : 0.13	r : 0.08	f : 0.05	g : 0.03	a : 0.03	h : 0.01	i : 0.01	= : 0.01	
p : 0.88	r : 0.11	
p : 0.88	r : 0.11	
p : 0.88	r : 0.11	
p : 0.88	r : 0.11	
p : 0.88	r : 0.11	
p : 0.88	r : 0.11	
p : 0.88	r : 0.11	
d : 0.30	c : 0.20	b : 0.13	e : 0.13	f : 0.05	r : 0.05	g : 0.03	a : 0.03	h : 0.01	i : 0.01	= : 0.01	
d : 0.30	c : 0.20	b : 0.13	e : 0.13	f : 0.05	g : 0.03	] : 0.03	r : 0.03	h : 0.01	i : 0.01	a : 0.01	= : 0.01	
d : 0.33	c : 0.20	] : 0.13	e : 0.13	f : 0.05	g : 0.05	h : 0.03	i : 0.01	2 : 0.01	= : 0.01	
d : 0.37	e : 0.18	2 : 0.08	g : 0.06	f : 0.05	h : 0.03	] : 0.03	b : 0.03	3 : 0.03	= : 0.03	c : 0.01	i : 0.01	a : 0.01	4 : 0.01	
e : 0.18	] : 0.16	2 : 0.13	g : 0.08	d : 0.08	3 : 0.06	f : 0.05	4 : 0.05	h : 0.03	c : 0.03	b : 0.03	= : 0.03	i : 0.01	a : 0.01	
e : 0.11	d : 0.11	] : 0.11	3 : 0.10	c : 0.10	g : 0.08	2 : 0.08	f : 0.05	4 : 0.05	b : 0.05	h : 0.03	a : 0.03	= : 0.03	i : 0.01	
c : 0.20	e : 0.13	d : 0.11	g : 0.10	b : 0.10	3 : 0.06	] : 0.06	4 : 0.05	2 : 0.05	h : 0.03	= : 0.03	i : 0.01	a : 0.01	
c : 0.22	e : 0.13	d : 0.13	g : 0.06	a : 0.06	b : 0.06	] : 0.05	2 : 0.05	= : 0.05	h : 0.03	4 : 0.03	3 : 0.03	i : 0.01	f : 0.01	: : 0.01	

#score	875.6481688182673
#seq	59
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_transcript_m3_run1.txt

#BEAR
b[cccqqqqqqqqccc]b	chr5:139819544-139819830(+)$1	286	142	160	14.0155
gggggqqqqqqqqggggg	chr6:135359081-135359385(-)$1	304	206	224	14.2634
ccc[aqqqqqqqqa]ccc	chr12:56552122-56552445(+)$1	323	280	298	13.9329
eee[aqqqqqqqqa]eee	chr6:4032111-4032352(+)$1	241	174	192	14.2394
!bb[aqqqqqqqqabb22	chr18:13057609-13057862(+)$1	253	171	189	12.9199
ggcccqqqqqqqqccc66	chr1:35824954-35825181(+)$1	227	102	120	13.5787
!!a[aqqqqqqqqa]a22	chr18:33720983-33721226(+)$1	243	220	238	13.9741
!a!!aqqqqqqqqa22a2	chr1:235377096-235377339(-)$1	243	87	105	13.2466
fff[aqqqqqqqqa]fff	chr12:123005800-123006089(-)$1	289	153	171	14.2445
f[cccqqqqqqqqccc]f	chr7:151842254-151842493(-)$1	239	5	23	14.6617
iiiiiqqqqqqqqiiiii	chr9:75777579-75777830(+)$1	251	109	127	13.8591
::cccqqqqqqqqcccff	chr4:83791456-83791662(-)$1	206	12	30	12.2460
fffffqqqqqqqqfffff	chr2:61708182-61708410(-)$1	228	174	192	14.1933
bbcccqqqqqqqqccc]b	chr9:132637432-132637734(+)$1	302	141	159	13.5561
fffffqqqqqqqqfffff	chr11:118650203-118650522(-)$1	319	202	220	14.1933
eeeeeqqqqqqqqeeeee	chr7:92079906-92080169(+)$1	263	207	225	14.1119
fffffqqqqqqqqfffff	chr6:79688302-79688537(-)$1	235	125	143	14.1933
fffffqqqqqqqqfffff	chr2:114670632-114670941(+)$1	309	264	282	14.1933
gggggqqqqqqqqggggg	chr5:10255943-10256196(+)$1	253	10	28	14.2634
d[cccqqqqqqqqccc]d	chr8:95780663-95780887(+)$1	224	170	188	14.2104
[ddddqqqqqqqqdddd2	chr8:103357641-103357880(-)$1	239	19	37	13.0707
eeeeeqqqqqqqqeeeee	chr1:109824078-109824341(-)$1	263	239	257	14.1119
f[cccqqqqqqqqcccff	chr6:147660179-147660468(+)$1	289	132	150	14.5438
a[cccqqqqqqqqccc]a	chr20:57562756-57563033(+)$1	277	220	238	14.4474
eeeeeqqqqqqqqeeeee	chr3:197023927-197024226(-)$1	299	174	192	14.1119
fffffqqqqqqqqfffff	chr2:15768420-15768692(+)$1	272	243	261	14.1933
fffffqqqqqqqqfffff	chr1:144859882-144860210(-)$1	328	162	180	14.1933
fffffqqqqqqqqfffff	chr16:56438969-56439270(-)$1	301	273	291	14.1933
eeeeeqqqqqqqqeeeee	chr22:19122540-19122829(-)$1	289	86	104	14.1119
eeeeeqqqqqqqqeeeee	chrX:53654704-53654952(-)$1	248	43	61	14.1119
fffffqqqqqqqqfffff	chr1:46072117-46072388(+)$1	271	207	225	14.1933
!ddddqqqqqqqqddddb	chr6:47544152-47544401(+)$1	249	125	143	12.8133
#ddddqqqqqqqqdddd3	chr1:145439470-145439691(+)$1	221	127	145	13.1183
fffffqqqqqqqqfffff	chr18:33718704-33718972(+)$1	268	63	81	14.1933
gggggqqqqqqqqggggg	chr11:67048022-67048348(+)$1	326	214	232	14.2634
eeeeeqqqqqqqqeeeee	chr17:73142616-73142893(-)$1	277	224	242	14.1119
eeeeeqqqqqqqqeeeee	chr11:58379642-58379897(+)$1	255	91	109	14.1119
fffffqqqqqqqqfffff	chr2:234761078-234761386(-)$1	308	257	275	14.1933
ccc[aqqqqqqqqa]ccc	chr19:7998198-7998459(-)$1	261	63	81	13.9329
g[cccqqqqqqqqccc]g	chr6:136600886-136601137(-)$1	251	71	89	14.6754
""cccqqqqqqqqccc55	chr1:145440670-145440910(+)$1	240	7	25	12.7212
ggcccqqqqqqqqccc66	chr1:35824935-35825154(+)$1	219	121	139	13.5787
eeeeeqqqqqqqqeeeee	chr12:46325103-46325477(-)$1	374	313	331	14.1119
eeeeeqqqqqqqqeeeee	chr5:139062283-139062564(+)$1	281	71	89	14.1119
eecccqqqqqqqqccc22	chr7:104809438-104809734(-)$1	296	168	186	14.2672
"""bbqqqqqqqqbb22d	chr7:143079207-143079460(+)$1	253	229	247	12.4116
gggggqqqqqqqqggggg	chr11:85687594-85687840(-)$1	246	29	47	14.2634
b!!bbqqqqqqqqbb444	chr1:160969030-160969348(-)$1	318	262	280	12.8308
gg[bbqqqqqqqqbb]gg	chr5:86636978-86637241(+)$1	263	58	76	13.1819
!!cccqqqqqqqqccc22	chr17:77812529-77812779(-)$1	250	197	215	14.3639
fffffqqqqqqqqfffff	chr1:19525036-19525284(-)$1	248	32	50	14.1933
[ddddqqqqqqqqdddd]	chr3:172480596-172480865(+)$1	269	27	45	13.1713
gggggqqqqqqqqggggg	chr2:70143098-70143393(+)$1	295	162	180	14.2634
iiibbqqqqqqqqbb22i	chr12:46760775-46761080(-)$1	305	7	25	12.7698
g[cccqqqqqqqqccc22	chr16:18800328-18800571(-)$1	243	55	73	14.4023
eeeeeqqqqqqqqeeeee	chr16:2818316-2818575(+)$1	259	123	141	14.1119
gggggqqqqqqqqggggg	chr1:55631466-55631747(-)$1	281	63	81	14.2634
fffffqqqqqqqqfffff	chr9:128002752-128003039(-)$1	287	58	76	14.1933
c[cccqqqqqqqqccc]c	chr1:150940066-150940314(-)$1	248	200	218	14.4698
eeeeeqqqqqqqqeeeee	chr21:30434747-30434990(-)$1	243	1	19	14.1119
eee[aqqqqqqqqa]eee	chr7:99008684-99008972(+)$1	288	71	89	14.2394
eeeeeqqqqqqqqeeeee	chr3:139101980-139102255(-)$1	275	135	153	14.1119
#ddddqqqqqqqqdddd2	chr19:47287590-47287846(-)$1	256	141	159	12.9366
eeeeeqqqqqqqqeeeee	chr1:44451016-44451299(+)$1	283	5	23	14.1119

#otherMatches

#Seq PSSM
AAUGGUUUUGUUUCCAGU	chr5:139819544-139819830(+)$1	286	142	160	14.0155
CUCUUGUAAGGUAAGGAG	chr6:135359081-135359385(-)$1	304	206	224	14.2634
GGGCUGGGAUAGAAACUC	chr12:56552122-56552445(+)$1	323	280	298	13.9329
ACUACAAAGAAACGAAGU	chr6:4032111-4032352(+)$1	241	174	192	14.2394
AGGUGCUUGAUUUCCCCC	chr18:13057609-13057862(+)$1	253	171	189	12.9199
GUUGGACUUAGAACCAUA	chr1:35824954-35825181(+)$1	227	102	120	13.5787
CUUAGUUAUAUCUCAAUA	chr18:33720983-33721226(+)$1	243	220	238	13.9741
aUGACAACAAUGAGGAAG	chr1:235377096-235377339(-)$1	243	87	105	13.2466
AAGAGGUAAUUAACACUU	chr12:123005800-123006089(-)$1	289	153	171	14.2445
AAAACGCUGAUGAGUUAU	chr7:151842254-151842493(-)$1	239	5	23	14.6617
UUUUCUCAGAACUGAAGA	chr9:75777579-75777830(+)$1	251	109	127	13.8591
ACCUAGGCAGAAAUAGUU	chr4:83791456-83791662(-)$1	206	12	30	12.2460
UUUGUCAUGCCAAAUAAA	chr2:61708182-61708410(-)$1	228	174	192	14.1933
CUCCUCACCCCACAGGAA	chr9:132637432-132637734(+)$1	302	141	159	13.5561
ACAUAUGUAAGGUUAUGU	chr11:118650203-118650522(-)$1	319	202	220	14.1933
AGUGGGUAAUGUGCCACU	chr7:92079906-92080169(+)$1	263	207	225	14.1119
AACUAACUGAAAAUGGUU	chr6:79688302-79688537(-)$1	235	125	143	14.1933
AAAAGAUUUAGUCCUUUU	chr2:114670632-114670941(+)$1	309	264	282	14.1933
AGCUUAAUUCUAGAAGCU	chr5:10255943-10256196(+)$1	253	10	28	14.2634
uaaaauacuuauuuuuaa	chr8:95780663-95780887(+)$1	224	170	188	14.2104
UAAAUGUAUGUGAAUUUU	chr8:103357641-103357880(-)$1	239	19	37	13.0707
aagagaaccaaaacucuu	chr1:109824078-109824341(-)$1	263	239	257	14.1119
UAGGUUCUUCAUCACCAC	chr6:147660179-147660468(+)$1	289	132	150	14.5438
ggacuaaaaucagagugu	chr20:57562756-57563033(+)$1	277	220	238	14.4474
GAGUUUAUUCCGUAACUC	chr3:197023927-197024226(-)$1	299	174	192	14.1119
UGUAGUGUGAUUGUUACG	chr2:15768420-15768692(+)$1	272	243	261	14.1933
AAGUGCUUGGAAAUACUU	chr1:144859882-144860210(-)$1	328	162	180	14.1933
GUAGUAACAGUAAAUUAC	chr16:56438969-56439270(-)$1	301	273	291	14.1933
CUGCCUGGCGUGUGGCAG	chr22:19122540-19122829(-)$1	289	86	104	14.1119
CAUGUAUACAAAAGCAUG	chrX:53654704-53654952(-)$1	248	43	61	14.1119
GUGGAAACGGGGCUCUAC	chr1:46072117-46072388(+)$1	271	207	225	14.1933
CUGGGACCCAAAACUCAG	chr6:47544152-47544401(+)$1	249	125	143	12.8133
AAUGAGAUGGUGAUCAUG	chr1:145439470-145439691(+)$1	221	127	145	13.1183
UCAGACUUUAAACUUUGG	chr18:33718704-33718972(+)$1	268	63	81	14.1933
GUGGAGCUCAACAUCCAC	chr11:67048022-67048348(+)$1	326	214	232	14.2634
CUGGGGAGUGAAACCUGG	chr17:73142616-73142893(-)$1	277	224	242	14.1119
CCUGUCUUCAAUUACAGG	chr11:58379642-58379897(+)$1	255	91	109	14.1119
CUCUGAGCUUACGCAGAG	chr2:234761078-234761386(-)$1	308	257	275	14.1933
UCAAGGAGAACAACGUGG	chr19:7998198-7998459(-)$1	261	63	81	13.9329
UUUAAAUAUCAUAUUGUA	chr6:136600886-136601137(-)$1	251	71	89	14.6754
CCCUGGUAAUUGGCAGCA	chr1:145440670-145440910(+)$1	240	7	25	12.7212
GUUGGACUUAGAACCAUA	chr1:35824935-35825154(+)$1	219	121	139	13.5787
GUCUAUAAAUAUUUGGAC	chr12:46325103-46325477(-)$1	374	313	331	14.1119
CCAUGAGGCCAUCCAUGG	chr5:139062283-139062564(+)$1	281	71	89	14.1119
AGUAGUUCAACAUCUGUG	chr7:104809438-104809734(-)$1	296	168	186	14.2672
AAUCAUUUCCCCCUGCGC	chr7:143079207-143079460(+)$1	253	229	247	12.4116
AGUGGAACUACAGCUACU	chr11:85687594-85687840(-)$1	246	29	47	14.2634
CAACCAGUUUGGAGGGAA	chr1:160969030-160969348(-)$1	318	262	280	12.8308
UUCAUGaauuuuaauaaa	chr5:86636978-86637241(+)$1	263	58	76	13.1819
AAUUUAUGCACUAAAAGG	chr17:77812529-77812779(-)$1	250	197	215	14.3639
CAUGGCACCUUUUCCAUG	chr1:19525036-19525284(-)$1	248	32	50	14.1933
UUUAAAAACACUAUUAAU	chr3:172480596-172480865(+)$1	269	27	45	13.1713
CAUGGUUAUGCCUCCAUG	chr2:70143098-70143393(+)$1	295	162	180	14.2634
UUUUGAAGACUGCCAAUG	chr12:46760775-46761080(-)$1	305	7	25	12.7698
UUCCGCAGUGUAAUGGUU	chr16:18800328-18800571(-)$1	243	55	73	14.4023
GGGACAGAUAAaagucuc	chr16:2818316-2818575(+)$1	259	123	141	14.1119
uuUUUCAAAAUAAAAAAA	chr1:55631466-55631747(-)$1	281	63	81	14.2634
CAGGACAUCAAGUUCUUG	chr9:128002752-128003039(-)$1	287	58	76	14.1933
GGGUGGACUAAGACACAC	chr1:150940066-150940314(-)$1	248	200	218	14.4698
UGUCAAAGGAAUGUGACA	chr21:30434747-30434990(-)$1	243	1	19	14.1119
GCUGGGAGUUGAUUGAGC	chr7:99008684-99008972(+)$1	288	71	89	14.2394
GUAUUAGAAAUAAAAUAC	chr3:139101980-139102255(-)$1	275	135	153	14.1119
UGCUACCUGAUUUUGGUU	chr19:47287590-47287846(-)$1	256	141	159	12.9366
CCCCAAUGAGUACUGGGG	chr1:44451016-44451299(+)$1	283	5	23	14.1119

#DB
(.(((........))).)	chr5:139819544-139819830(+)$1	1	142	160	14.0155
(((((........)))))	chr6:135359081-135359385(-)$1	1	206	224	14.2634
(((.(........).)))	chr12:56552122-56552445(+)$1	1	280	298	13.9329
(((.(........).)))	chr6:4032111-4032352(+)$1	1	174	192	14.2394
.((.(........)))..	chr18:13057609-13057862(+)$1	1	171	189	12.9199
(((((........)))..	chr1:35824954-35825181(+)$1	1	102	120	13.5787
..(.(........).)..	chr18:33720983-33721226(+)$1	1	220	238	13.9741
.(..(........)..).	chr1:235377096-235377339(-)$1	1	87	105	13.2466
(((.(........).)))	chr12:123005800-123006089(-)$1	1	153	171	14.2445
(.(((........))).)	chr7:151842254-151842493(-)$1	1	5	23	14.6617
(((((........)))))	chr9:75777579-75777830(+)$1	1	109	127	13.8591
..(((........)))((	chr4:83791456-83791662(-)$1	1	12	30	12.2460
(((((........)))))	chr2:61708182-61708410(-)$1	1	174	192	14.1933
(((((........))).)	chr9:132637432-132637734(+)$1	1	141	159	13.5561
(((((........)))))	chr11:118650203-118650522(-)$1	1	202	220	14.1933
(((((........)))))	chr7:92079906-92080169(+)$1	1	207	225	14.1119
(((((........)))))	chr6:79688302-79688537(-)$1	1	125	143	14.1933
(((((........)))))	chr2:114670632-114670941(+)$1	1	264	282	14.1933
(((((........)))))	chr5:10255943-10256196(+)$1	1	10	28	14.2634
(.(((........))).)	chr8:95780663-95780887(+)$1	1	170	188	14.2104
.((((........)))).	chr8:103357641-103357880(-)$1	1	19	37	13.0707
(((((........)))))	chr1:109824078-109824341(-)$1	1	239	257	14.1119
(.(((........)))))	chr6:147660179-147660468(+)$1	1	132	150	14.5438
(.(((........))).)	chr20:57562756-57563033(+)$1	1	220	238	14.4474
(((((........)))))	chr3:197023927-197024226(-)$1	1	174	192	14.1119
(((((........)))))	chr2:15768420-15768692(+)$1	1	243	261	14.1933
(((((........)))))	chr1:144859882-144860210(-)$1	1	162	180	14.1933
(((((........)))))	chr16:56438969-56439270(-)$1	1	273	291	14.1933
(((((........)))))	chr22:19122540-19122829(-)$1	1	86	104	14.1119
(((((........)))))	chrX:53654704-53654952(-)$1	1	43	61	14.1119
(((((........)))))	chr1:46072117-46072388(+)$1	1	207	225	14.1933
.((((........)))))	chr6:47544152-47544401(+)$1	1	125	143	12.8133
.((((........)))).	chr1:145439470-145439691(+)$1	1	127	145	13.1183
(((((........)))))	chr18:33718704-33718972(+)$1	1	63	81	14.1933
(((((........)))))	chr11:67048022-67048348(+)$1	1	214	232	14.2634
(((((........)))))	chr17:73142616-73142893(-)$1	1	224	242	14.1119
(((((........)))))	chr11:58379642-58379897(+)$1	1	91	109	14.1119
(((((........)))))	chr2:234761078-234761386(-)$1	1	257	275	14.1933
(((.(........).)))	chr19:7998198-7998459(-)$1	1	63	81	13.9329
(.(((........))).)	chr6:136600886-136601137(-)$1	1	71	89	14.6754
..(((........)))..	chr1:145440670-145440910(+)$1	1	7	25	12.7212
(((((........)))..	chr1:35824935-35825154(+)$1	1	121	139	13.5787
(((((........)))))	chr12:46325103-46325477(-)$1	1	313	331	14.1119
(((((........)))))	chr5:139062283-139062564(+)$1	1	71	89	14.1119
(((((........)))..	chr7:104809438-104809734(-)$1	1	168	186	14.2672
...((........))..)	chr7:143079207-143079460(+)$1	1	229	247	12.4116
(((((........)))))	chr11:85687594-85687840(-)$1	1	29	47	14.2634
(..((........))...	chr1:160969030-160969348(-)$1	1	262	280	12.8308
((.((........)).))	chr5:86636978-86637241(+)$1	1	58	76	13.1819
..(((........)))..	chr17:77812529-77812779(-)$1	1	197	215	14.3639
(((((........)))))	chr1:19525036-19525284(-)$1	1	32	50	14.1933
.((((........)))).	chr3:172480596-172480865(+)$1	1	27	45	13.1713
(((((........)))))	chr2:70143098-70143393(+)$1	1	162	180	14.2634
(((((........))..)	chr12:46760775-46761080(-)$1	1	7	25	12.7698
(.(((........)))..	chr16:18800328-18800571(-)$1	1	55	73	14.4023
(((((........)))))	chr16:2818316-2818575(+)$1	1	123	141	14.1119
(((((........)))))	chr1:55631466-55631747(-)$1	1	63	81	14.2634
(((((........)))))	chr9:128002752-128003039(-)$1	1	58	76	14.1933
(.(((........))).)	chr1:150940066-150940314(-)$1	1	200	218	14.4698
(((((........)))))	chr21:30434747-30434990(-)$1	1	1	19	14.1119
(((.(........).)))	chr7:99008684-99008972(+)$1	1	71	89	14.2394
(((((........)))))	chr3:139101980-139102255(-)$1	1	135	153	14.1119
.((((........)))).	chr19:47287590-47287846(-)$1	1	141	159	12.9366
(((((........)))))	chr1:44451016-44451299(+)$1	1	5	23	14.1119

#PSSM
e : 0.25	f : 0.23	g : 0.17	! : 0.07	b : 0.04	c : 0.04	i : 0.03	[ : 0.03	# : 0.03	" : 0.03	: : 0.01	d : 0.01	a : 0.01	
e : 0.25	f : 0.20	g : 0.14	[ : 0.12	d : 0.07	! : 0.04	c : 0.03	b : 0.03	i : 0.03	" : 0.03	a : 0.01	: : 0.01	
c : 0.26	e : 0.23	f : 0.20	g : 0.09	d : 0.07	! : 0.03	i : 0.03	b : 0.01	a : 0.01	" : 0.01	[ : 0.01	
c : 0.23	e : 0.20	f : 0.18	[ : 0.10	g : 0.09	d : 0.07	b : 0.06	! : 0.01	i : 0.01	
c : 0.23	e : 0.20	f : 0.18	a : 0.12	g : 0.09	d : 0.07	b : 0.06	i : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.23	e : 0.20	f : 0.18	a : 0.12	g : 0.09	d : 0.07	b : 0.06	i : 0.01	
c : 0.23	e : 0.20	f : 0.18	g : 0.09	] : 0.09	b : 0.07	d : 0.07	2 : 0.01	i : 0.01	
c : 0.26	e : 0.23	f : 0.20	g : 0.09	d : 0.07	2 : 0.04	b : 0.01	a : 0.01	i : 0.01	4 : 0.01	] : 0.01	
e : 0.23	f : 0.23	] : 0.10	g : 0.10	2 : 0.10	d : 0.07	c : 0.03	6 : 0.03	a : 0.01	i : 0.01	5 : 0.01	4 : 0.01	
f : 0.25	e : 0.23	g : 0.12	2 : 0.12	b : 0.04	c : 0.04	6 : 0.03	i : 0.03	d : 0.03	a : 0.01	3 : 0.01	5 : 0.01	4 : 0.01	] : 0.01	

#score	889.9888536660295
#seq	64
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_CDS_m1_run2.txt

#BEAR
ff!!cccvvvvvvvvvvvvvcccfff	chr21:47647450-47647698(-)$1	248	145	171	25.2079
ddd[cccwwwwwwwwwwwwwwccc]d	chr11:13749064-13749331(+)$1	267	206	232	23.6581
fffffccctttttttttttccc]fff	chr9:139342203-139342461(-)$1	258	187	213	22.7033
eeee[cccuuuuuuuuuuuuccc]ee	chr9:134015835-134016109(+)$1	274	199	225	24.3596
cc!!cccvvvvvvvvvvvvvcccccc	chr11:70170465-70170711(+)$1	246	52	78	25.4647
ccc[dddduuuuuuuuuuuudddd]c	chr19:46341702-46341974(-)$1	272	177	203	23.1867
dddd[bbvvvvvvvvvvvvvbb]ddd	chr7:100283821-100284049(-)$1	228	14	40	23.6650
::eeeeevvvvvvvvvvvvveeeee:	chr12:113710937-113711197(+)$1	260	124	150	21.3953
$$eeeeevvvvvvvvvvvvveeeee4	chr17:34858831-34859109(-)$1	278	143	169	23.7311
dddd[cccuuuuuuuuuuuucccddd	chr16:2808372-2808621(+)$1	249	119	145	23.7399
fffa[bbvvvvvvvvvvvvvbb]a]f	chr17:80041626-80041867(-)$1	241	78	104	24.1611
fffffbbuuuuuuuuuuuubb]ffff	chr20:60892617-60892843(-)$1	226	162	188	22.1691
hhhhhhhuuuuuuuuuuuuhhhhhhh	chr14:31143027-31143299(+)$1	272	220	246	20.7881
:gggggggtttttttttttggggggg	chr16:22328334-22328559(+)$1	225	191	217	21.5664
####cccvvvvvvvvvvvvvccc333	chr3:4699818-4700063(+)$1	245	93	119	25.2919
cc[bb!!bbtttttttttttbb333b	chr2:178081536-178081768(+)$1	232	152	178	21.4902
gggggggvvvvvvvvvvvvvgggggg	chr4:71840766-71841063(+)$1	297	93	119	25.1726
!eeeeewwwwwwwwwwwwwweeeee3	chr14:39646946-39647174(+)$1	228	67	93	22.9028
dddd[bbuuuuuuuuuuuubb]dddd	chr1:43905516-43905765(+)$1	249	200	226	21.9578
::ffffffuuuuuuuuuuuuffffff	chr11:85692069-85692371(-)$1	302	221	247	21.1638
gggg[cccuuuuuuuuuuuuccc]gg	chr5:37396558-37396773(+)$1	215	122	148	24.7776
eeebb[avvvvvvvvvvvvva]bb]e	chr19:34890705-34890939(+)$1	234	30	56	23.6839
hhhhhhhvvvvvvvvvvvvvhhhhhh	chr9:123624095-123624312(-)$1	217	30	56	22.7543
::eeeeevvvvvvvvvvvvveeeee:	chr1:52257622-52257843(-)$1	221	79	105	21.3953
hhhhcccwwwwwwwwwwwwwwccc]h	chr9:71840890-71841160(+)$1	270	134	160	23.1476
i[bbcccvvvvvvvvvvvvvccc22b	chr11:62400573-62400842(-)$1	269	54	80	24.5049
ggggcccwwwwwwwwwwwwwwccc]g	chr10:99225721-99226016(-)$1	295	157	183	24.1633
eeeeyyyyyyyyyyyyyyyyeeeeeb	chr17:80441489-80441708(+)$1	219	13	39	19.8689
ee"""cccuuuuuuuuuuuuccc22e	chr6:20781275-20781599(+)$1	324	117	143	23.9654
gggggggtttttttttttggggggg]	chr6:29578607-29578879(-)$1	272	223	249	21.5088
d####cccuuuuuuuuuuuuccc333	chr17:76114993-76115226(-)$1	233	76	102	24.3205
ffffffwwwwwwwwwwwwwwffffff	chr7:120765773-120765995(+)$1	222	35	61	22.6236
c[eeeeevvvvvvvvvvvvveeeee]	chr15:57383886-57384191(+)$1	305	248	274	24.4692
eeee[cccuuuuuuuuuuuuccc22e	chr1:11876571-11876842(+)$1	271	82	108	24.0774
e[bb!!bbuuuuuuuuuuuubb22bb	chr12:53566038-53566292(-)$1	254	185	211	21.9867
gggggggwwwwwwwwwwwwwwggggg	chr12:132400855-132401113(+)$1	258	54	80	23.8430
cc[fffffftttttttttttffffff	chr6:43014214-43014501(-)$1	287	203	229	21.8916
cc####ccctttttttttttccc444	chr17:73838515-73838757(-)$1	242	42	68	22.7011
eedddd[bbtttttttttttbb]ddd	chr19:39336600-39336830(-)$1	230	48	74	21.0180
mbbddddvvvvvvvvvvvvvdddd::	chr4:151935494-151935785(-)$1	291	114	140	20.8925
iiiiiiiyyyyyyyyyyyyyyyyiii	chr7:151884246-151884467(-)$1	221	174	200	21.2069
gggggbbvvvvvvvvvvvvvbb:eee	chr21:47916883-47917120(+)$1	237	45	71	23.4670
ffffffffftttttttttttffffff	chr10:72513462-72513693(+)$1	231	75	101	21.5069
####cccvvvvvvvvvvvvvccc444	chr6:28119944-28120263(+)$1	319	247	273	25.0353
cccdddduuuuuuuuuuuudddd]cc	chr5:145551372-145551610(-)$1	238	72	98	22.4881
dd[ddddvvvvvvvvvvvvvdddddd	chr1:150532137-150532357(+)$1	220	145	171	23.7434
ee::cccuuuuuuuuuuuuccc:===	chr6:161501887-161502171(+)$1	284	133	159	20.8618
ddd[eeeeettttttttttteeeeed	chr20:33902439-33902669(-)$1	230	124	150	21.3574
iiiiiiiitttttttttttiiiiiii	chr11:44135634-44135908(+)$1	274	221	247	22.6377
c]afffffftttttttttttffffff	chr19:5668151-5668397(+)$1	246	53	79	21.5243
========uuuuuuuuuuuu======	chr6:33382410-33382685(+)$1	275	24	50	24.4445
=======vvvvvvvvvvvvv======	chr15:50924965-50925186(-)$1	221	73	99	25.4660
!eeeeeawwwwwwwwwwwwwwa]eee	chr1:54870430-54870704(-)$1	274	110	136	23.2258
ffffcccyyyyyyyyyyyyyyyyccc	chr19:34869737-34869954(+)$1	217	17	43	20.6942
dddddddduuuuuuuuuuuudddd]d	chr14:76964899-76965187(+)$1	288	136	162	22.5871
ggggggguuuuuuuuuuuuggggggg	chr10:72500796-72501013(+)$1	217	124	150	23.4452
=======vvvvvvvvvvvvv======	chr8:100160104-100160339(+)$1	235	132	158	25.4660
dd[ddddwwwwwwwwwwwwwwdddd]	chr15:28493595-28493839(-)$1	244	184	210	22.6586
f[eeeeewwwwwwwwwwwwwweeeee	chr11:47772594-47772892(-)$1	298	106	132	22.9952
d[ffffffuuuuuuuuuuuuffffff	chr4:104117226-104117504(-)$1	278	184	210	23.1419
cffffffvvvvvvvvvvvvvffffff	chr1:19465478-19465769(-)$1	291	216	242	24.2062
cc[cccwwwwwwwwwwwwwwccc]cc	chr17:27246152-27246394(-)$1	242	129	155	23.8411
iiiiiiiyyyyyyyyyyyyyyyyiii	chr14:21460599-21460878(+)$1	279	228	254	21.2069

#otherMatches

#Seq PSSM
CUGAACGGGAUGACAUUUUACGUGGG	chr21:47647450-47647698(-)$1	248	145	171	25.2079
UAUGAAAUAUUCCACAAUUUUUUUGG	chr11:13749064-13749331(+)$1	267	206	232	23.6581
UGAGGUGUGAGUGGAGGGAACAGCCU	chr9:139342203-139342461(-)$1	258	187	213	22.7033
AGUCUCUCAUCAAAACACCAGAGCGA	chr9:134015835-134016109(+)$1	274	199	225	24.3596
CACUUACUAAAGAACUCAAUGUAUGC	chr11:70170465-70170711(+)$1	246	52	78	25.4647
GAUCUCCGGCCAGUCAGACACGGACA	chr19:46341702-46341974(-)$1	272	177	203	23.1867
GCUGGCGGGAACAUGGGGAACGGCGG	chr7:100283821-100284049(-)$1	228	14	40	23.6650
UCGUCAGUCUGUUUGUCCUUCUGACC	chr12:113710937-113711197(+)$1	260	124	150	21.3953
ACAGCCCAUAUCCUGCCAAAGGGCUC	chr17:34858831-34859109(-)$1	278	143	169	23.7311
UUCUCGCUCACCAACCCCAaagcaga	chr16:2808372-2808621(+)$1	249	119	145	23.7399
CCGCGCUUCCUCUCUUCACCAGGGUC	chr17:80041626-80041867(-)$1	241	78	104	24.1611
CACGGCCAACUCCCUCCCAGGCCCGU	chr20:60892617-60892843(-)$1	226	162	188	22.1691
AUUUUUUUUUUAUUUAACUAAAAAAU	chr14:31143027-31143299(+)$1	272	220	246	20.7881
UGGUGGGUGCCUACCCCCUGCCCACC	chr16:22328334-22328559(+)$1	225	191	217	21.5664
UUUCGAGCUAGAUCCCACCACUCUGC	chr3:4699818-4700063(+)$1	245	93	119	25.2919
GAUGUUUGAUAUUUUAACUUUCUUUA	chr2:178081536-178081768(+)$1	232	152	178	21.4902
UCCAAUGCAGAUAUGAGUAUCAUUGG	chr4:71840766-71841063(+)$1	297	93	119	25.1726
UGACAGUAAAUUUUCUUAUUCUGUUC	chr14:39646946-39647174(+)$1	228	67	93	22.9028
CAGGUAUGCAAGUCAAGAGGUCCCUG	chr1:43905516-43905765(+)$1	249	200	226	21.9578
UAGACUAACAGUUGAAUAAUUUAGUU	chr11:85692069-85692371(-)$1	302	221	247	21.1638
UUCAGUGGUAAUUUAAGAAUUCGGUG	chr5:37396558-37396773(+)$1	215	122	148	24.7776
CUCAGGGAUUUCAGUAGCAACGUUAG	chr19:34890705-34890939(+)$1	234	30	56	23.6839
UUGUUGCCUCACGAAUUCCAGCAGCA	chr9:123624095-123624312(-)$1	217	30	56	22.7543
AUGGAAGAACCUUGUUUUGACUUCCU	chr1:52257622-52257843(-)$1	221	79	105	21.3953
UUGAGAGACAGCCAGCAGACCCUCAU	chr9:71840890-71841160(+)$1	270	134	160	23.1476
GAGAACUGGUAUGAUUGGAGAGUGGU	chr11:62400573-62400842(-)$1	269	54	80	24.5049
CAGCAGCCACCUCGUACCCAAGCUCG	chr10:99225721-99226016(-)$1	295	157	183	24.1633
AGGGUCACUAAUGUCAAAUCUCCUGC	chr17:80441489-80441708(+)$1	219	13	39	19.8689
CUGGGUCAGAAAAAGGAUAAUGGAAG	chr6:20781275-20781599(+)$1	324	117	143	23.9654
UCAAGGGAAAAAGUCAUGCCUUUGAG	chr6:29578607-29578879(-)$1	272	223	249	21.5088
CUGAACUGCCACCCCCUCCCCAGGCU	chr17:76114993-76115226(-)$1	233	76	102	24.3205
gugcauuaauaaacauccaugugcau	chr7:120765773-120765995(+)$1	222	35	61	22.6236
GUCAGAGACAUUUUUUAUCCCUUUGU	chr15:57383886-57384191(+)$1	305	248	274	24.4692
CUUUUCCUGUGUGAACAGAAAGGUCG	chr1:11876571-11876842(+)$1	271	82	108	24.0774
ACCAUCCCACAAAGGAUUUAGGUUUG	chr12:53566038-53566292(-)$1	254	185	211	21.9867
GGGGCAGUCUUCACCCCAUCUCUGUC	chr12:132400855-132401113(+)$1	258	54	80	23.8430
ACCCAUCAACAUCCCUUUCUUUGAUG	chr6:43014214-43014501(-)$1	287	203	229	21.8916
GUCUUCCCCACUCCUCCACAGGGUUC	chr17:73838515-73838757(-)$1	242	42	68	22.7011
CCUCCUGUCUACAUUUUCCUGAGAGG	chr19:39336600-39336830(-)$1	230	48	74	21.0180
AGGGGCAUCAGAAUGAAAUUUGCCGU	chr4:151935494-151935785(-)$1	291	114	140	20.8925
CCUUUUUUUUUUUUAACUGCAAUAGA	chr7:151884246-151884467(-)$1	221	174	200	21.2069
UUUGGCCAAAUACAAAGAGAGGAAGA	chr21:47916883-47917120(+)$1	237	45	71	23.4670
CUUUCACCCUGUUUCCAGGUGGGUGA	chr10:72513462-72513693(+)$1	231	75	101	21.5069
UUUAGAUUUUUUGUUUGUUUGUUGUU	chr6:28119944-28120263(+)$1	319	247	273	25.0353
CAGCGAUUGAAAGGAAAAUGUUGUCU	chr5:145551372-145551610(-)$1	238	72	98	22.4881
GCCUGAGCACCAACCAGACCCUCAGC	chr1:150532137-150532357(+)$1	220	145	171	23.7434
AUAACUCAUUACAUACGGGGAGGAGA	chr6:161501887-161502171(+)$1	284	133	159	20.8618
GAACAUGAUCCUCAUGACAAAUCAUU	chr20:33902439-33902669(-)$1	230	124	150	21.3574
GGUACAUUCAUCCCAGCCAGGUGUGC	chr11:44135634-44135908(+)$1	274	221	247	22.6377
GGGGCCACCCCAUCCCACACGGUGGC	chr19:5668151-5668397(+)$1	246	53	79	21.5243
AGGAAUGGCGUAAGGAGGAACCGUUU	chr6:33382410-33382685(+)$1	275	24	50	24.4445
CUUCAUUUAUUUCAAACACUGAUGGA	chr15:50924965-50925186(-)$1	221	73	99	25.4660
AUACGUCUACGAAUAUUUACUGCACG	chr1:54870430-54870704(-)$1	274	110	136	23.2258
CUUGGCCUCUACUGCUGAACCCUGGC	chr19:34869737-34869954(+)$1	217	17	43	20.6942
GUAUGUCUUUCCUUCUCCAUGGACGG	chr14:76964899-76965187(+)$1	288	136	162	22.5871
GAGUGGGCCCCACCCCCCUCCCACUC	chr10:72500796-72501013(+)$1	217	124	150	23.4452
AGGUAUAUUUUGUGAUUUGCUAUAUU	chr8:100160104-100160339(+)$1	235	132	158	25.4660
GCUCGUUACUUUAGGCUUUUCGACGU	chr15:28493595-28493839(-)$1	244	184	210	22.6586
UAUUAUUGGAAUACACAAACAAAUGA	chr11:47772594-47772892(-)$1	298	106	132	22.9952
GGUUUGUAUUCACUCAAUGCUGCAGA	chr4:104117226-104117504(-)$1	278	184	210	23.1419
UGUCUCCUUGGGCAGAGGGUGGGGAC	chr1:19465478-19465769(-)$1	291	216	242	24.2062
UGUGACUAUUGCCCUCUCCUGUUUCA	chr17:27246152-27246394(-)$1	242	129	155	23.8411
CCUAUUCAUAAAGUAGUUUUCUAGGA	chr14:21460599-21460878(+)$1	279	228	254	21.2069

#DB
((..(((.............))))))	chr21:47647450-47647698(-)$1	1	145	171	25.2079
(((.(((..............))).)	chr11:13749064-13749331(+)$1	1	206	232	23.6581
((((((((...........))).)))	chr9:139342203-139342461(-)$1	1	187	213	22.7033
((((.(((............))).))	chr9:134015835-134016109(+)$1	1	199	225	24.3596
((..(((.............))))))	chr11:70170465-70170711(+)$1	1	52	78	25.4647
(((.((((............)))).)	chr19:46341702-46341974(-)$1	1	177	203	23.1867
((((.((.............)).)))	chr7:100283821-100284049(-)$1	1	14	40	23.6650
..(((((.............))))).	chr12:113710937-113711197(+)$1	1	124	150	21.3953
..(((((.............))))).	chr17:34858831-34859109(-)$1	1	143	169	23.7311
((((.(((............))))))	chr16:2808372-2808621(+)$1	1	119	145	23.7399
((((.((.............)).).)	chr17:80041626-80041867(-)$1	1	78	104	24.1611
(((((((............)).))))	chr20:60892617-60892843(-)$1	1	162	188	22.1691
(((((((............)))))))	chr14:31143027-31143299(+)$1	1	220	246	20.7881
.(((((((...........)))))))	chr16:22328334-22328559(+)$1	1	191	217	21.5664
....(((.............)))...	chr3:4699818-4700063(+)$1	1	93	119	25.2919
((.((..((...........))...)	chr2:178081536-178081768(+)$1	1	152	178	21.4902
(((((((.............))))))	chr4:71840766-71841063(+)$1	1	93	119	25.1726
.(((((..............))))).	chr14:39646946-39647174(+)$1	1	67	93	22.9028
((((.((............)).))))	chr1:43905516-43905765(+)$1	1	200	226	21.9578
..((((((............))))))	chr11:85692069-85692371(-)$1	1	221	247	21.1638
((((.(((............))).))	chr5:37396558-37396773(+)$1	1	122	148	24.7776
(((((.(.............).)).)	chr19:34890705-34890939(+)$1	1	30	56	23.6839
(((((((.............))))))	chr9:123624095-123624312(-)$1	1	30	56	22.7543
..(((((.............))))).	chr1:52257622-52257843(-)$1	1	79	105	21.3953
(((((((..............))).)	chr9:71840890-71841160(+)$1	1	134	160	23.1476
(.(((((.............)))..)	chr11:62400573-62400842(-)$1	1	54	80	24.5049
(((((((..............))).)	chr10:99225721-99226016(-)$1	1	157	183	24.1633
((((................)))))(	chr17:80441489-80441708(+)$1	1	13	39	19.8689
((...(((............)))..)	chr6:20781275-20781599(+)$1	1	117	143	23.9654
(((((((...........))))))).	chr6:29578607-29578879(-)$1	1	223	249	21.5088
(....(((............)))...	chr17:76114993-76115226(-)$1	1	76	102	24.3205
((((((..............))))))	chr7:120765773-120765995(+)$1	1	35	61	22.6236
(.(((((.............))))).	chr15:57383886-57384191(+)$1	1	248	274	24.4692
((((.(((............)))..)	chr1:11876571-11876842(+)$1	1	82	108	24.0774
(.((..((............))..))	chr12:53566038-53566292(-)$1	1	185	211	21.9867
(((((((..............)))))	chr12:132400855-132401113(+)$1	1	54	80	23.8430
((.((((((...........))))))	chr6:43014214-43014501(-)$1	1	203	229	21.8916
((....(((...........)))...	chr17:73838515-73838757(-)$1	1	42	68	22.7011
))((((.((...........)).)))	chr19:39336600-39336830(-)$1	1	48	74	21.0180
.))((((.............))))..	chr4:151935494-151935785(-)$1	1	114	140	20.8925
(((((((................)))	chr7:151884246-151884467(-)$1	1	174	200	21.2069
)))))((.............)).(((	chr21:47916883-47917120(+)$1	1	45	71	23.4670
(((((((((...........))))))	chr10:72513462-72513693(+)$1	1	75	101	21.5069
....(((.............)))...	chr6:28119944-28120263(+)$1	1	247	273	25.0353
(((((((............)))).))	chr5:145551372-145551610(-)$1	1	72	98	22.4881
((.((((.............))))))	chr1:150532137-150532357(+)$1	1	145	171	23.7434
))..(((............))).(((	chr6:161501887-161502171(+)$1	1	133	159	20.8618
(((.(((((...........))))))	chr20:33902439-33902669(-)$1	1	124	150	21.3574
((((((((...........)))))))	chr11:44135634-44135908(+)$1	1	221	247	22.6377
).)((((((...........))))))	chr19:5668151-5668397(+)$1	1	53	79	21.5243
((((((((............))))))	chr6:33382410-33382685(+)$1	1	24	50	24.4445
(((((((.............))))))	chr15:50924965-50925186(-)$1	1	73	99	25.4660
.((((((..............).)))	chr1:54870430-54870704(-)$1	1	110	136	23.2258
(((((((................)))	chr19:34869737-34869954(+)$1	1	17	43	20.6942
((((((((............)))).)	chr14:76964899-76965187(+)$1	1	136	162	22.5871
(((((((............)))))))	chr10:72500796-72501013(+)$1	1	124	150	23.4452
(((((((.............))))))	chr8:100160104-100160339(+)$1	1	132	158	25.4660
((.((((..............)))).	chr15:28493595-28493839(-)$1	1	184	210	22.6586
(.(((((..............)))))	chr11:47772594-47772892(-)$1	1	106	132	22.9952
(.((((((............))))))	chr4:104117226-104117504(-)$1	1	184	210	23.1419
(((((((.............))))))	chr1:19465478-19465769(-)$1	1	216	242	24.2062
((.(((..............))).))	chr17:27246152-27246394(-)$1	1	129	155	23.8411
(((((((................)))	chr14:21460599-21460878(+)$1	1	228	254	21.2069

#PSSM
d : 0.15	c : 0.15	f : 0.12	e : 0.12	g : 0.11	: : 0.06	i : 0.06	h : 0.04	= : 0.04	# : 0.03	! : 0.03	$ : 0.01	m : 0.01	
e : 0.14	f : 0.12	d : 0.12	g : 0.12	c : 0.11	[ : 0.07	: : 0.04	h : 0.04	# : 0.04	i : 0.04	= : 0.04	$ : 0.01	b : 0.01	] : 0.01	
e : 0.17	f : 0.14	g : 0.12	d : 0.11	[ : 0.07	# : 0.06	h : 0.04	b : 0.04	i : 0.04	= : 0.04	! : 0.03	c : 0.03	" : 0.01	: : 0.01	a : 0.01	
f : 0.15	e : 0.15	d : 0.14	g : 0.12	# : 0.06	b : 0.06	[ : 0.04	h : 0.04	i : 0.04	= : 0.04	! : 0.03	a : 0.01	" : 0.01	: : 0.01	c : 0.01	
c : 0.17	f : 0.14	e : 0.12	[ : 0.11	d : 0.11	g : 0.09	i : 0.04	= : 0.04	h : 0.03	b : 0.03	# : 0.03	y : 0.01	" : 0.01	! : 0.01	
c : 0.28	e : 0.12	d : 0.11	f : 0.11	b : 0.07	g : 0.07	i : 0.04	= : 0.04	h : 0.03	! : 0.03	[ : 0.01	y : 0.01	# : 0.01	
c : 0.28	d : 0.09	b : 0.09	e : 0.09	f : 0.09	g : 0.07	w : 0.04	i : 0.04	= : 0.04	h : 0.03	a : 0.03	! : 0.01	y : 0.01	[ : 0.01	
v : 0.31	w : 0.15	c : 0.12	u : 0.09	f : 0.07	y : 0.06	b : 0.04	d : 0.03	g : 0.01	t : 0.01	e : 0.01	i : 0.01	= : 0.01	
v : 0.31	u : 0.28	w : 0.15	t : 0.06	y : 0.06	f : 0.04	b : 0.03	c : 0.01	e : 0.01	
v : 0.31	u : 0.28	t : 0.17	w : 0.15	y : 0.06	
v : 0.31	u : 0.28	t : 0.17	w : 0.15	y : 0.06	
v : 0.31	u : 0.28	t : 0.17	w : 0.15	y : 0.06	
v : 0.31	u : 0.28	t : 0.17	w : 0.15	y : 0.06	
v : 0.31	u : 0.28	t : 0.17	w : 0.15	y : 0.06	
v : 0.31	u : 0.28	t : 0.17	w : 0.15	y : 0.06	
v : 0.31	u : 0.28	t : 0.17	w : 0.15	y : 0.06	
v : 0.31	u : 0.28	t : 0.17	w : 0.15	y : 0.06	
v : 0.31	u : 0.28	t : 0.17	w : 0.15	y : 0.06	
v : 0.31	u : 0.28	w : 0.15	t : 0.15	y : 0.06	g : 0.01	
v : 0.31	u : 0.19	w : 0.15	t : 0.11	y : 0.06	g : 0.04	c : 0.03	b : 0.03	h : 0.01	d : 0.01	i : 0.01	
c : 0.23	b : 0.12	w : 0.11	e : 0.11	f : 0.11	d : 0.07	g : 0.06	y : 0.04	= : 0.04	h : 0.03	a : 0.01	i : 0.01	
c : 0.28	e : 0.12	f : 0.11	d : 0.09	b : 0.09	g : 0.07	] : 0.04	y : 0.04	= : 0.04	h : 0.03	i : 0.01	a : 0.01	
c : 0.25	e : 0.12	f : 0.12	d : 0.11	] : 0.07	g : 0.07	y : 0.04	= : 0.04	h : 0.03	: : 0.03	3 : 0.01	b : 0.01	2 : 0.01	i : 0.01	
f : 0.15	e : 0.15	d : 0.14	c : 0.07	g : 0.07	] : 0.06	2 : 0.06	= : 0.06	3 : 0.04	i : 0.04	h : 0.03	4 : 0.03	a : 0.01	b : 0.01	
e : 0.17	f : 0.15	] : 0.11	d : 0.09	g : 0.09	c : 0.06	= : 0.06	3 : 0.04	2 : 0.04	i : 0.04	h : 0.03	4 : 0.03	b : 0.01	: : 0.01	
f : 0.17	d : 0.12	e : 0.11	g : 0.09	c : 0.07	b : 0.06	= : 0.06	: : 0.04	4 : 0.04	h : 0.04	3 : 0.04	] : 0.04	i : 0.04	

#score	1448.5796549348795
#seq	63
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_transcript_m2_run1.txt

#BEAR
f!!aqqqqqqqqa22ff	chr19:10220339-10220549(+)$1	210	159	176	12.8915
bb[aqqqqqqqqa]bb]	chr5:651415-651716(+)$1	301	20	37	12.1379
#cccqqqqqqqqccc44	chr2:203141052-203141317(+)$1	265	207	224	13.6619
ddddqqqqqqqqdddd2	chr16:85689999-85690336(+)$1	337	87	104	11.6541
!!bbqqqqqqqqbb666	chr5:137896692-137896899(-)$1	207	12	29	11.7974
#cccrrrrrrrrrccc4	chr12:110719310-110719663(+)$1	353	221	238	8.1168
f[bbqqqqqqqqbbfff	chr19:4037223-4037473(+)$1	250	38	55	12.6419
!!bbqqqqqqqqbb22d	chr1:984893-985170(+)$1	277	203	220	12.1092
bcccrrrrrrrrrccc]	chr1:1284370-1284623(-)$1	253	184	201	7.8311
ggggrrrrrrrrrgggg	chr6:133136352-133136583(+)$1	231	36	53	7.3992
ddddqqqqqqqqddddc	chr9:100777588-100777836(+)$1	248	140	157	11.6951
ccccqqqqqqqqccc:H	chr9:136217601-136217837(+)$1	236	145	162	11.8851
%cccqqqqqqqqccc66	chr19:24187174-24187384(-)$1	210	158	175	12.5284
[cccqqqqqqqqccc]c	chr2:203142732-203142979(+)$1	247	200	217	13.5542
f[bbqqqqqqqqbb]ff	chr16:89023319-89023608(-)$1	289	117	134	12.6526
ffffqqqqqqqqfffff	chr7:45144136-45144441(-)$1	305	191	208	12.6379
f!!aqqqqqqqqa22ff	chr19:10220349-10220572(+)$1	223	149	166	12.8915
ffffqqqqqqqqfffff	chr17:27050608-27050830(+)$1	222	141	158	12.6379
bcccqqqqqqqqccc]b	chr19:12814338-12814589(-)$1	251	105	122	13.0487
hhhhqqqqqqqqhhhhh	chr22:21800173-21800439(+)$1	266	10	27	11.0681
ddddqqqqqqqqdddd2	chr8:9629638-9629902(+)$1	264	162	179	11.6541
ffffqqqqqqqqfffff	chr9:139734826-139735104(+)$1	278	260	277	12.6379
gg[aqqqqqqqqa]ggg	chr17:80045175-80045413(-)$1	238	82	99	13.0156
ffffqqqqqqqqfffff	chr12:123994742-123995032(-)$1	290	250	267	12.6379
[cccqqqqqqqqcccbb	chr22:23522678-23522941(+)$1	263	187	204	13.0789
%cccqqqqqqqqccc66	chr19:24187184-24187410(-)$1	226	184	201	12.5284
eeeeqqqqqqqqeeeee	chr17:16342770-16343036(+)$1	266	60	77	11.4388

#otherMatches

#Seq PSSM
UGACGCACUGUGGGAAG	chr19:10220339-10220549(+)$1	210	159	176	12.8915
GCGUGGACUGUGAGGUG	chr5:651415-651716(+)$1	301	20	37	12.1379
CUGGAUAAAAUACUACC	chr2:203141052-203141317(+)$1	265	207	224	13.6619
gcgugagaaggagcgcg	chr16:85689999-85690336(+)$1	337	87	104	11.6541
AACAUAAAACCUUGGUA	chr5:137896692-137896899(-)$1	207	12	29	11.7974
GUGCGAGGCGGAGGCGA	chr12:110719310-110719663(+)$1	353	221	238	8.1168
UGCAGAGAGAAGUGGGG	chr19:4037223-4037473(+)$1	250	38	55	12.6419
AACCCCUGCCAUGGCGG	chr1:984893-985170(+)$1	277	203	220	12.1092
GAGACCAAGAUUAUCUA	chr1:1284370-1284623(-)$1	253	184	201	7.8311
CCACUUAAAAUGUGUGG	chr6:133136352-133136583(+)$1	231	36	53	7.3992
GCAGAAACAGAACUGUU	chr9:100777588-100777836(+)$1	248	140	157	11.6951
UCAGCAUUGCAUCUGAG	chr9:136217601-136217837(+)$1	236	145	162	11.8851
CUGAUCAUCAUUUCAAA	chr19:24187174-24187384(-)$1	210	158	175	12.5284
AGGGCUGGUUUUCCCCA	chr2:203142732-203142979(+)$1	247	200	217	13.5542
UCCGGGAGAGAGCGUGA	chr16:89023319-89023608(-)$1	289	117	134	12.6526
UGGCAGCUCAGAGCCGG	chr7:45144136-45144441(-)$1	305	191	208	12.6379
UGACGCACUGUGGGAAG	chr19:10220349-10220572(+)$1	223	149	166	12.8915
GUCAUAAUUAACUGACU	chr17:27050608-27050830(+)$1	222	141	158	12.6379
CCUCAAGUGAUGGAGAG	chr19:12814338-12814589(-)$1	251	105	122	13.0487
ACUCGGAAGAAGGAGUG	chr22:21800173-21800439(+)$1	266	10	27	11.0681
aaggggacaaugccuug	chr8:9629638-9629902(+)$1	264	162	179	11.6541
UUCUGAGCUGGAAGAGG	chr9:139734826-139735104(+)$1	278	260	277	12.6379
CACCAUGCUGCAGAUGU	chr17:80045175-80045413(-)$1	238	82	99	13.0156
GGCCCCCCACAUGGCCC	chr12:123994742-123995032(-)$1	290	250	267	12.6379
AGCGGAGAGCAGCGCCC	chr22:23522678-23522941(+)$1	263	187	204	13.0789
CUGAUCAUCAUUUCAAA	chr19:24187184-24187410(-)$1	226	184	201	12.5284
ACUUGUAAUAGGAAGUG	chr17:16342770-16343036(+)$1	266	60	77	11.4388

#DB
(..(........)..))	chr19:10220339-10220549(+)$1	1	159	176	12.8915
((.(........).)).	chr5:651415-651716(+)$1	1	20	37	12.1379
.(((........)))..	chr2:203141052-203141317(+)$1	1	207	224	13.6619
((((........)))).	chr16:85689999-85690336(+)$1	1	87	104	11.6541
..((........))...	chr5:137896692-137896899(-)$1	1	12	29	11.7974
.(((.........))).	chr12:110719310-110719663(+)$1	1	221	238	8.1168
(.((........)))))	chr19:4037223-4037473(+)$1	1	38	55	12.6419
..((........))..)	chr1:984893-985170(+)$1	1	203	220	12.1092
((((.........))).	chr1:1284370-1284623(-)$1	1	184	201	7.8311
((((.........))))	chr6:133136352-133136583(+)$1	1	36	53	7.3992
((((........)))))	chr9:100777588-100777836(+)$1	1	140	157	11.6951
)(((........))).)	chr9:136217601-136217837(+)$1	1	145	162	11.8851
.(((........)))..	chr19:24187174-24187384(-)$1	1	158	175	12.5284
.(((........))).)	chr2:203142732-203142979(+)$1	1	200	217	13.5542
(.((........)).))	chr16:89023319-89023608(-)$1	1	117	134	12.6526
((((........)))))	chr7:45144136-45144441(-)$1	1	191	208	12.6379
(..(........)..))	chr19:10220349-10220572(+)$1	1	149	166	12.8915
((((........)))))	chr17:27050608-27050830(+)$1	1	141	158	12.6379
((((........))).)	chr19:12814338-12814589(-)$1	1	105	122	13.0487
((((........)))))	chr22:21800173-21800439(+)$1	1	10	27	11.0681
((((........)))).	chr8:9629638-9629902(+)$1	1	162	179	11.6541
((((........)))))	chr9:139734826-139735104(+)$1	1	260	277	12.6379
((.(........).)))	chr17:80045175-80045413(-)$1	1	82	99	13.0156
((((........)))))	chr12:123994742-123995032(-)$1	1	250	267	12.6379
.(((........)))))	chr22:23522678-23522941(+)$1	1	187	204	13.0789
.(((........)))..	chr19:24187184-24187410(-)$1	1	184	201	12.5284
((((........)))))	chr17:16342770-16343036(+)$1	1	60	77	11.4388

#PSSM
f : 0.29	b : 0.11	d : 0.11	# : 0.07	! : 0.07	g : 0.07	% : 0.07	[ : 0.07	c : 0.03	h : 0.03	e : 0.03	
c : 0.33	! : 0.14	f : 0.14	d : 0.11	[ : 0.07	g : 0.07	b : 0.03	h : 0.03	e : 0.03	
c : 0.33	b : 0.14	f : 0.14	d : 0.11	! : 0.07	[ : 0.07	g : 0.03	h : 0.03	e : 0.03	
c : 0.33	a : 0.14	b : 0.14	f : 0.14	d : 0.11	g : 0.03	h : 0.03	e : 0.03	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
q : 0.88	r : 0.11	
c : 0.25	a : 0.14	b : 0.14	f : 0.14	d : 0.11	r : 0.11	h : 0.03	e : 0.03	
c : 0.33	b : 0.14	f : 0.14	d : 0.11	2 : 0.07	] : 0.07	g : 0.03	h : 0.03	e : 0.03	
c : 0.33	f : 0.18	2 : 0.11	d : 0.11	g : 0.07	b : 0.03	6 : 0.03	] : 0.03	h : 0.03	e : 0.03	
f : 0.29	d : 0.11	6 : 0.11	b : 0.07	c : 0.07	g : 0.07	] : 0.07	4 : 0.03	2 : 0.03	: : 0.03	h : 0.03	e : 0.03	
f : 0.29	6 : 0.11	] : 0.07	4 : 0.07	2 : 0.07	g : 0.07	c : 0.07	b : 0.07	d : 0.03	H : 0.03	h : 0.03	e : 0.03	

#score	321.83375984023695
#seq	27
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_transcript_m2_run1.txt

#BEAR
===oooooo====	chr13:113866062-113866383(+)$1	321	30	43	10.0694
gggoooooogggg	chr7:214615-214927(+)$1	312	214	227	9.9908
b[aooooooa]bb	chr11:2152978-2153192(-)$1	214	102	115	9.3071
cccooooooccc3	chr20:43034133-43034364(+)$1	231	40	53	10.9701
cccooooooccci	chr11:2152475-2152680(-)$1	205	31	44	10.9048
c[aooooooa]cc	chr7:924162-924381(+)$1	219	200	213	10.3391
cccooooooccc:	chr11:2152784-2153016(-)$1	232	22	35	10.1971
cccooooooccci	chr11:2152470-2152672(-)$1	202	23	36	10.9048
dddoooooodddd	chr13:113763414-113763756(+)$1	342	160	173	9.8592
cccooooooccc]	chr11:60689925-60690238(+)$1	313	34	47	11.0513
cccooooooccc:	chr11:2152659-2152863(-)$1	204	4	17	10.1971
dddoooooodddd	chr14:105338812-105339111(+)$1	299	156	169	9.8592
cccooooooccc]	chr11:374240-374501(+)$1	261	45	58	11.0513
d[aooooooa]dd	chr12:51323967-51324185(+)$1	218	67	80	9.9858
===oooooo====	chr10:75009837-75010061(-)$1	224	200	213	10.0694
cccooooooccc:	chr11:2152648-2152852(-)$1	204	63	76	10.1971
cccooooooccc:	chr17:56167126-56167377(+)$1	251	11	24	10.1971
cccooooooccc:	chr11:2152691-2152895(-)$1	204	106	119	10.1971
ffaooooooa]ff	chr19:945043-945300(+)$1	257	214	227	9.7563
fffooooooffff	chr7:47514735-47514995(-)$1	260	215	228	9.5217
!bboooooobbcc	chr19:938056-938301(+)$1	245	5	18	9.0614
dddoooooodddd	chr1:2169185-2169438(+)$1	253	215	228	9.8592
cccooooooccc]	chr17:79961586-79961867(+)$1	281	36	49	11.0513
dddoooooodddd	chr16:89470492-89470747(-)$1	255	113	126	9.8592
dddoooooodddd	chr2:38553064-38553315(-)$1	251	179	192	9.8592
fffooooooffff	chr20:60622887-60623171(-)$1	284	86	99	9.5217
fffooooooffff	chr20:43033039-43033291(+)$1	252	69	82	9.5217
fffooooooffff	chr16:448089-448339(+)$1	250	142	155	9.5217
eeeooooooeeee	chr7:157877183-157877525(-)$1	342	160	173	9.4993
cccooooooccc:	chr16:89511637-89511943(-)$1	306	251	264	10.1971
cccooooooccc:	chr11:2152741-2152948(-)$1	207	33	46	10.1971
fffooooooffff	chr20:60560653-60561087(-)$1	434	88	101	9.5217
dddoooooodddd	chr1:2173870-2174137(+)$1	267	4	17	9.8592
cccooooooccc]	chr12:51323985-51324212(+)$1	227	208	221	11.0513
cccooooooccc2	chr20:61589400-61589668(+)$1	268	228	241	10.7540
eeeooooooeeee	chr14:75369303-75369554(+)$1	251	49	62	9.4993
cccooooooccc:	chr22:20112239-20112505(+)$1	266	251	264	10.1971
cccooooooccci	chr11:2152480-2152684(-)$1	204	35	48	10.9048
cccooooooccci	chr11:2152536-2152741(-)$1	205	92	105	10.9048
eeeooooooeeee	chr19:15762294-15762517(+)$1	223	6	19	9.4993
!!aooooooa333	chr16:50613649-50613869(+)$1	220	99	112	9.9216
gggoooooogggg	chr3:32882042-32882310(+)$1	268	104	117	9.9908
cccooooooccci	chr11:2152546-2152756(-)$1	210	107	120	10.9048
cccooooooccc:	chr11:2152698-2152906(-)$1	208	117	130	10.1971
eeeooooooeeee	chr17:18965291-18965550(+)$1	259	20	33	9.4993
dddoooooodddd	chr2:10304229-10304507(+)$1	278	107	120	9.8592
d[aooooooa]dd	chr14:89825989-89826365(-)$1	376	82	95	9.9858
cccoooooocccf	chr16:85673921-85674195(+)$1	274	186	199	10.7942
eeeooooooeeee	chr19:15761767-15762033(+)$1	266	174	187	9.4993
dddoooooodddd	chr16:588857-589107(+)$1	250	169	182	9.8592
ccaooooooa]cc	chr11:637270-637539(+)$1	269	244	257	10.4759
fffooooooffff	chr22:43193150-43193445(-)$1	295	17	30	9.5217
cccooooooccc3	chr18:74135197-74135532(-)$1	335	93	106	10.9701
cccooooooccc]	chr17:79965317-79965531(+)$1	214	188	201	11.0513
iiiooooooiiii	chr17:79048563-79048835(+)$1	272	6	19	9.9485
cccooooooccci	chr11:2152534-2152736(-)$1	202	87	100	10.9048
eeeooooooeeee	chr10:114711995-114712253(+)$1	258	219	232	9.4993
cccooooooccc]	chr12:50156793-50157018(+)$1	225	133	146	11.0513
dddoooooodddd	chr21:46894421-46894676(+)$1	255	115	128	9.8592
b[aooooooabb]	chr1:2199100-2199339(+)$1	239	16	29	9.4445
eeeooooooeeee	chr3:127790078-127790362(+)$1	284	129	142	9.4993
dddoooooodddd	chr16:85654784-85655056(+)$1	272	251	264	9.8592
dddoooooodddd	chr20:30823969-30824237(+)$1	268	241	254	9.8592
gggoooooogggg	chr4:2827532-2827977(+)$1	445	371	384	9.9908
cccooooooccc:	chr11:2152695-2152898(-)$1	203	109	122	10.1971
fffooooooffff	chr8:142423600-142423883(+)$1	283	106	119	9.5217
dddoooooodddd	chr1:2221489-2221725(+)$1	236	89	102	9.8592
cccooooooccc]	chr13:113627080-113627344(+)$1	264	13	26	11.0513
gggoooooogggg	chr1:2166706-2166940(+)$1	234	56	69	9.9908
cccooooooccc:	chr11:2152737-2152941(-)$1	204	26	39	10.1971

#otherMatches

#Seq PSSM
ucuuuaucuagaa	chr13:113866062-113866383(+)$1	321	30	43	10.0694
GAAAGAAGCUUCC	chr7:214615-214927(+)$1	312	214	227	9.9908
cacacacacgagc	chr11:2152978-2153192(-)$1	214	102	115	9.3071
GGAGAUGUGUCCA	chr20:43034133-43034364(+)$1	231	40	53	10.9701
CCACAAAAUUGGA	chr11:2152475-2152680(-)$1	205	31	44	10.9048
GUCAUUCUGGUCC	chr7:924162-924381(+)$1	219	200	213	10.3391
gcacacacaugca	chr11:2152784-2153016(-)$1	232	22	35	10.1971
CCACAAAAUUGGA	chr11:2152470-2152672(-)$1	202	23	36	10.9048
CCGGGAGCGUGGG	chr13:113763414-113763756(+)$1	342	160	173	9.8592
GUCUCUCAUGACU	chr11:60689925-60690238(+)$1	313	34	47	11.0513
gcacacacaugca	chr11:2152659-2152863(-)$1	204	4	17	10.1971
CACUCUUGCGUGC	chr14:105338812-105339111(+)$1	299	156	169	9.8592
CCUGGGGGAAGGA	chr11:374240-374501(+)$1	261	45	58	11.0513
CGGUUUUUUUGGU	chr12:51323967-51324185(+)$1	218	67	80	9.9858
caggaguagcugg	chr10:75009837-75010061(-)$1	224	200	213	10.0694
gcacacacaugca	chr11:2152648-2152852(-)$1	204	63	76	10.1971
AGGGAUUGAUCUA	chr17:56167126-56167377(+)$1	251	11	24	10.1971
gcacacacaugca	chr11:2152691-2152895(-)$1	204	106	119	10.1971
cgcccguaagacg	chr19:945043-945300(+)$1	257	214	227	9.7563
ACAGCUCUGUGUG	chr7:47514735-47514995(-)$1	260	215	228	9.5217
uugaacucccaac	chr19:938056-938301(+)$1	245	5	18	9.0614
CACCCUCGUGUGG	chr1:2169185-2169438(+)$1	253	215	228	9.8592
CUCCCCACAGAGC	chr17:79961586-79961867(+)$1	281	36	49	11.0513
GCCAAACUGGGCU	chr16:89470492-89470747(-)$1	255	113	126	9.8592
cagacaccacugc	chr2:38553064-38553315(-)$1	251	179	192	9.8592
CUUGAUGAGGGGG	chr20:60622887-60623171(-)$1	284	86	99	9.5217
CACgugugugugu	chr20:43033039-43033291(+)$1	252	69	82	9.5217
GGGGCGGAGCUCA	chr16:448089-448339(+)$1	250	142	155	9.5217
uguggaugggcgu	chr7:157877183-157877525(-)$1	342	160	173	9.4993
GUUAAAGAAAACA	chr16:89511637-89511943(-)$1	306	251	264	10.1971
gcacacacaugca	chr11:2152741-2152948(-)$1	207	33	46	10.1971
CCUUUGGUCGGGG	chr20:60560653-60561087(-)$1	434	88	101	9.5217
GCCUACCGUGGCC	chr1:2173870-2174137(+)$1	267	4	17	9.8592
cugggauuacagg	chr12:51323985-51324212(+)$1	227	208	221	11.0513
AACGCCUUAGUUC	chr20:61589400-61589668(+)$1	268	228	241	10.7540
GUGCUGGUAUACU	chr14:75369303-75369554(+)$1	251	49	62	9.4993
UGCUUCUCUGCAU	chr22:20112239-20112505(+)$1	266	251	264	10.1971
CCACAAAAUUGGA	chr11:2152480-2152684(-)$1	204	35	48	10.9048
CCACAAAAUUGGA	chr11:2152536-2152741(-)$1	205	92	105	10.9048
ccaacuagcuggg	chr19:15762294-15762517(+)$1	223	6	19	9.4993
CUCUAACCUGCCA	chr16:50613649-50613869(+)$1	220	99	112	9.9216
CAGUUUUGUUUGG	chr3:32882042-32882310(+)$1	268	104	117	9.9908
CCACAAAAUUGGA	chr11:2152546-2152756(-)$1	210	107	120	10.9048
gcacacacaugca	chr11:2152698-2152906(-)$1	208	117	130	10.1971
gagguagcguuuu	chr17:18965291-18965550(+)$1	259	20	33	9.4993
GCagcagaguguu	chr2:10304229-10304507(+)$1	278	107	120	9.8592
ACCAUAUCCGCUC	chr14:89825989-89826365(-)$1	376	82	95	9.9858
CUGGCUUUGCAGG	chr16:85673921-85674195(+)$1	274	186	199	10.7942
ccaaaguacuggg	chr19:15761767-15762033(+)$1	266	174	187	9.4993
uagcuaggucuac	chr16:588857-589107(+)$1	250	169	182	9.8592
UCCUUCAUCGUGA	chr11:637270-637539(+)$1	269	244	257	10.4759
UCUGAUGUAGGAG	chr22:43193150-43193445(-)$1	295	17	30	9.5217
AGGGGGGAACCUU	chr18:74135197-74135532(-)$1	335	93	106	10.9701
CUGGGAAGACAGU	chr17:79965317-79965531(+)$1	214	188	201	11.0513
auaagugccugug	chr17:79048563-79048835(+)$1	272	6	19	9.9485
CCACAAAAUUGGA	chr11:2152534-2152736(-)$1	202	87	100	10.9048
GGCGGGGAGGCCC	chr10:114711995-114712253(+)$1	258	219	232	9.4993
CCUCUACUCAGGC	chr12:50156793-50157018(+)$1	225	133	146	11.0513
GGGAGAAUCCCCC	chr21:46894421-46894676(+)$1	255	115	128	9.8592
CACACUUCAGGGA	chr1:2199100-2199339(+)$1	239	16	29	9.4445
CUGCUGCUACAGA	chr3:127790078-127790362(+)$1	284	129	142	9.4993
CCGAUGUCCUGGC	chr16:85654784-85655056(+)$1	272	251	264	9.8592
gcuuacugcagcc	chr20:30823969-30824237(+)$1	268	241	254	9.8592
GGCACCACAGCCU	chr4:2827532-2827977(+)$1	445	371	384	9.9908
gcacacacaugca	chr11:2152695-2152898(-)$1	203	109	122	10.1971
CGUCAGAACACGG	chr8:142423600-142423883(+)$1	283	106	119	9.5217
GGGGUGGAGUCCU	chr1:2221489-2221725(+)$1	236	89	102	9.8592
cauagaugagugg	chr13:113627080-113627344(+)$1	264	13	26	11.0513
auaagccacugug	chr1:2166706-2166940(+)$1	234	56	69	9.9908
gcacacacaugca	chr11:2152737-2152941(-)$1	204	26	39	10.1971

#DB
(((......))))	chr13:113866062-113866383(+)$1	1	30	43	10.0694
(((......))))	chr7:214615-214927(+)$1	1	214	227	9.9908
(.(......).))	chr11:2152978-2153192(-)$1	1	102	115	9.3071
(((......))).	chr20:43034133-43034364(+)$1	1	40	53	10.9701
(((......)))(	chr11:2152475-2152680(-)$1	1	31	44	10.9048
(.(......).))	chr7:924162-924381(+)$1	1	200	213	10.3391
(((......))).	chr11:2152784-2153016(-)$1	1	22	35	10.1971
(((......)))(	chr11:2152470-2152672(-)$1	1	23	36	10.9048
(((......))))	chr13:113763414-113763756(+)$1	1	160	173	9.8592
(((......))).	chr11:60689925-60690238(+)$1	1	34	47	11.0513
(((......))).	chr11:2152659-2152863(-)$1	1	4	17	10.1971
(((......))))	chr14:105338812-105339111(+)$1	1	156	169	9.8592
(((......))).	chr11:374240-374501(+)$1	1	45	58	11.0513
(.(......).))	chr12:51323967-51324185(+)$1	1	67	80	9.9858
(((......))))	chr10:75009837-75010061(-)$1	1	200	213	10.0694
(((......))).	chr11:2152648-2152852(-)$1	1	63	76	10.1971
(((......))).	chr17:56167126-56167377(+)$1	1	11	24	10.1971
(((......))).	chr11:2152691-2152895(-)$1	1	106	119	10.1971
(((......).))	chr19:945043-945300(+)$1	1	214	227	9.7563
(((......))))	chr7:47514735-47514995(-)$1	1	215	228	9.5217
.((......))))	chr19:938056-938301(+)$1	1	5	18	9.0614
(((......))))	chr1:2169185-2169438(+)$1	1	215	228	9.8592
(((......))).	chr17:79961586-79961867(+)$1	1	36	49	11.0513
(((......))))	chr16:89470492-89470747(-)$1	1	113	126	9.8592
(((......))))	chr2:38553064-38553315(-)$1	1	179	192	9.8592
(((......))))	chr20:60622887-60623171(-)$1	1	86	99	9.5217
(((......))))	chr20:43033039-43033291(+)$1	1	69	82	9.5217
(((......))))	chr16:448089-448339(+)$1	1	142	155	9.5217
(((......))))	chr7:157877183-157877525(-)$1	1	160	173	9.4993
(((......))).	chr16:89511637-89511943(-)$1	1	251	264	10.1971
(((......))).	chr11:2152741-2152948(-)$1	1	33	46	10.1971
(((......))))	chr20:60560653-60561087(-)$1	1	88	101	9.5217
(((......))))	chr1:2173870-2174137(+)$1	1	4	17	9.8592
(((......))).	chr12:51323985-51324212(+)$1	1	208	221	11.0513
(((......))).	chr20:61589400-61589668(+)$1	1	228	241	10.7540
(((......))))	chr14:75369303-75369554(+)$1	1	49	62	9.4993
(((......))).	chr22:20112239-20112505(+)$1	1	251	264	10.1971
(((......)))(	chr11:2152480-2152684(-)$1	1	35	48	10.9048
(((......)))(	chr11:2152536-2152741(-)$1	1	92	105	10.9048
(((......))))	chr19:15762294-15762517(+)$1	1	6	19	9.4993
..(......)...	chr16:50613649-50613869(+)$1	1	99	112	9.9216
(((......))))	chr3:32882042-32882310(+)$1	1	104	117	9.9908
(((......)))(	chr11:2152546-2152756(-)$1	1	107	120	10.9048
(((......))).	chr11:2152698-2152906(-)$1	1	117	130	10.1971
(((......))))	chr17:18965291-18965550(+)$1	1	20	33	9.4993
(((......))))	chr2:10304229-10304507(+)$1	1	107	120	9.8592
(.(......).))	chr14:89825989-89826365(-)$1	1	82	95	9.9858
(((......))))	chr16:85673921-85674195(+)$1	1	186	199	10.7942
(((......))))	chr19:15761767-15762033(+)$1	1	174	187	9.4993
(((......))))	chr16:588857-589107(+)$1	1	169	182	9.8592
(((......).))	chr11:637270-637539(+)$1	1	244	257	10.4759
(((......))))	chr22:43193150-43193445(-)$1	1	17	30	9.5217
(((......))).	chr18:74135197-74135532(-)$1	1	93	106	10.9701
(((......))).	chr17:79965317-79965531(+)$1	1	188	201	11.0513
(((......))))	chr17:79048563-79048835(+)$1	1	6	19	9.9485
(((......)))(	chr11:2152534-2152736(-)$1	1	87	100	10.9048
(((......))))	chr10:114711995-114712253(+)$1	1	219	232	9.4993
(((......))).	chr12:50156793-50157018(+)$1	1	133	146	11.0513
(((......))))	chr21:46894421-46894676(+)$1	1	115	128	9.8592
(.(......))).	chr1:2199100-2199339(+)$1	1	16	29	9.4445
(((......))))	chr3:127790078-127790362(+)$1	1	129	142	9.4993
(((......))))	chr16:85654784-85655056(+)$1	1	251	264	9.8592
(((......))))	chr20:30823969-30824237(+)$1	1	241	254	9.8592
(((......))))	chr4:2827532-2827977(+)$1	1	371	384	9.9908
(((......))).	chr11:2152695-2152898(-)$1	1	109	122	10.1971
(((......))))	chr8:142423600-142423883(+)$1	1	106	119	9.5217
(((......))))	chr1:2221489-2221725(+)$1	1	89	102	9.8592
(((......))).	chr13:113627080-113627344(+)$1	1	13	26	11.0513
(((......))))	chr1:2166706-2166940(+)$1	1	56	69	9.9908
(((......))).	chr11:2152737-2152941(-)$1	1	26	39	10.1971

#PSSM
c : 0.42	d : 0.20	f : 0.11	e : 0.10	g : 0.05	= : 0.02	b : 0.02	! : 0.02	i : 0.01	
c : 0.41	d : 0.17	f : 0.11	e : 0.10	[ : 0.07	g : 0.05	= : 0.02	b : 0.01	! : 0.01	i : 0.01	
c : 0.40	d : 0.17	a : 0.11	f : 0.10	e : 0.10	g : 0.05	= : 0.02	b : 0.01	i : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.40	d : 0.17	a : 0.11	f : 0.10	e : 0.10	g : 0.05	= : 0.02	b : 0.01	i : 0.01	
c : 0.40	d : 0.17	f : 0.10	e : 0.10	] : 0.08	g : 0.05	= : 0.02	b : 0.02	3 : 0.01	i : 0.01	
c : 0.44	d : 0.20	f : 0.11	e : 0.10	g : 0.05	= : 0.02	b : 0.02	3 : 0.01	i : 0.01	
d : 0.20	: : 0.15	f : 0.12	] : 0.11	i : 0.10	e : 0.10	g : 0.05	3 : 0.04	c : 0.04	= : 0.02	b : 0.01	2 : 0.01	

#score	708.2334128187119
#seq	70
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_UTR_m2_run2.txt

#BEAR
eee[ccc[eeeeeqqqqqqqqeeeeeccc3	chr6:31625740-31625961(+)$1	221	128	158	16.0314
eeeee####ddddqqqqqqqqdddd4444e	chr14:94844788-94845017(-)$1	229	180	210	16.4581
bb!!ccc####bbqqqqqqqqbbccc22bb	chr19:6719264-6719493(-)$1	229	182	212	17.0674
ffffff"""ddddqqqqqqqqdddd4444f	chr6:7899738-7899996(-)$1	258	79	109	16.3049
i!!ccc!!eeeeeqqqqqqqqeeeee]ccc	chr7:10979554-10979858(-)$1	304	23	53	16.7035
bbiiiiiiiii[aqqqqqqqqa]iiiiiii	chr15:72502065-72502301(-)$1	236	11	41	16.7034
$$$$dddd"""bbqqqqqqqqbb22dddd6	chr17:79805067-79805277(-)$1	210	70	100	15.6538
ee[a[eeeee[bbqqqqqqqqbb]eeeee]	chr3:52019820-52020062(+)$1	242	178	208	16.0105
]adddd[ffffffqqqqqqqqffffff]dd	chr15:44045921-44046156(+)$1	235	189	219	14.6043
ggggggg####bbqqqqqqqqbb333gggg	chr17:49230856-49231117(+)$1	261	129	159	17.7785
:dddd[dddd!!aqqqqqqqqa]dddd]dd	chr15:72500884-72501192(-)$1	308	214	244	14.8777
a$$$$$gggggggqqqqqqqqggggggg55	chr5:135392252-135392517(+)$1	265	221	251	15.0320
bb"""ccc[a[bbqqqqqqqqbba]ccc]b	chr5:138260120-138260421(+)$1	301	150	180	17.1795
g[ccc[a[a!!bbqqqqqqqqbb22a333a	chr14:95080689-95080974(+)$1	285	191	221	18.2796
ffffbb[ffffffqqqqqqqqffffff444	chr17:79892429-79892717(-)$1	288	181	211	15.0451
e$$$$$bb[ddddqqqqqqqqdddd]bb33	chrX:153590829-153591046(-)$1	217	116	146	15.2254
!!ccc[ccc!!bbqqqqqqqqbb4444ccc	chr22:38201213-38201480(+)$1	267	88	118	17.8840
e"""bb!!eeeeeqqqqqqqqeeeee]bb]	chr17:26696269-26696524(-)$1	255	184	214	15.7312
dddd!!gggggggqqqqqqqqggggggg22	chr8:22277086-22277388(+)$1	302	148	178	16.2409
ccc[a[gggggggqqqqqqqqggggggg]a	chr12:110765520-110765797(+)$1	277	175	205	17.1289
fffdddd####bbqqqqqqqqbb333dddd	chr20:60962277-60962497(+)$1	220	108	138	16.4644
ggggiiiiiiiiiqqqqqqqqiiiiiiiii	chr7:43908806-43909076(-)$1	270	52	82	16.9375
gdddd[cccddddrrrrrrrrrdddd]ccc	chr4:155486946-155487195(+)$1	249	76	106	10.4409
))))bb!!eeeeeqqqqqqqqeeeee333b	chr20:60884671-60884896(-)$1	225	162	192	14.7535
$$$$dddd"""bbqqqqqqqqbb22dddd6	chr17:79805024-79805260(-)$1	236	53	83	15.6538
[dddd!!ccc[bbqqqqqqqqbb]cccddd	chr17:37070535-37070799(+)$1	264	122	152	16.5999
dd[bbbbffffffqqqqqqqqffffff]bb	chr14:95090024-95090285(+)$1	261	189	219	14.1157
"""bbdddd!!bbqqqqqqqqbb]dddd]b	chr22:29191363-29191627(-)$1	264	175	205	16.1665
cc[ccc[ccc[bbqqqqqqqqbb333ccc]	chr12:7054949-7055223(+)$1	274	180	210	17.8789
Hhhhhhhhh[cccqqqqqqqqccc]hhhhh	chr2:10924227-10924527(-)$1	300	61	91	13.7622
cc####bb!!cccrrrrrrrrrccc22bb3	chr11:71155800-71156030(-)$1	230	144	174	10.9513
eee!!ddddddddqqqqqqqqdddd>>>>>	chr9:116823664-116823880(-)$1	216	114	144	14.9018
[cccccc!!ddddrrrrrrrrrdddd333c	chr15:48624377-48624692(+)$1	315	77	107	11.7793
gg!!ccc"""cccqqqqqqqqccc333ccc	chr14:53162191-53162566(-)$1	375	24	54	18.3682
dd[ggggggg[bbqqqqqqqqbbggggggg	chr20:44049923-44050187(+)$1	264	6	36	17.1134
::ccc[ccc[cccqqqqqqqqcccccc]cc	chr7:75615756-75616022(+)$1	266	2	32	15.5036
ii[dddd"""cccqqqqqqqqccc333ddd	chr6:75949921-75950186(-)$1	265	56	86	17.2673
hhhhhh[ffffffqqqqqqqqffffff444	chr14:24776482-24776780(-)$1	298	128	158	14.8161
eeeea"""ddddaqqqqqqqqa]dddd333	chr6:144416226-144416476(-)$1	250	24	54	16.7955
gggggg"""ddddqqqqqqqqddddggggg	chr17:39679813-39680102(-)$1	289	25	55	16.6914
iiiii[ccc[cccqqqqqqqqcccccciii	chr3:150480603-150480878(-)$1	275	166	196	17.1389
[dddd[aa!!cccqqqqqqqqccc22a]a]	chr15:64448912-64449170(-)$1	258	191	221	17.0257
=============rrrrrrrrr========	chr3:184045518-184045884(+)$1	366	232	262	12.1724
bb[a[a[a[ddddqqqqqqqqdddda]a]a	chr11:62393214-62393448(-)$1	234	83	113	16.7209
ddd[dddd!!abbqqqqqqqqbb]a22ddd	chr21:27484347-27484564(-)$1	217	154	184	16.1862
dd[ggggggg[bbqqqqqqqqbbggggggg	chr1:92182101-92182365(-)$1	264	20	50	17.1134
cc!!bbgggggggqqqqqqqqggggggg]b	chr12:58088537-58088779(+)$1	242	55	85	16.6176
::ffffffeeeeeqqqqqqqqeeeee4444	chr11:130011756-130012029(+)$1	273	32	62	13.8470
==========[arrrrrrrrra]=======	chr1:55524188-55524419(+)$1	231	123	153	12.1169
:::ccc"""ddddqqqqqqqqdddd4444c	chr16:85838450-85838796(+)$1	346	177	207	14.7334
ffff"""dddd[aqqqqqqqqa]dddd]ff	chr2:176045981-176046226(-)$1	245	85	115	15.4930
ccc[a[gggggggqqqqqqqqggggggg]a	chr5:135364586-135364844(+)$1	258	137	167	17.1289

#otherMatches

#Seq PSSM
UGUAACUUCAUCUAAGUCCCCAGAUGGGUA	chr6:31625740-31625961(+)$1	221	128	158	16.0314
UACCAAGUCUCCCCUCUUCAUGGGAAAAGU	chr14:94844788-94845017(-)$1	229	180	210	16.4581
CACGACUUCCCAGGCAAAAAACUAGUGCUG	chr19:6719264-6719493(-)$1	229	182	212	17.0674
CAGCUUAAAGCUUUUCAAGCCAGGCCAAGA	chr6:7899738-7899996(-)$1	258	79	109	16.3049
CGCAAGCUGCCCUCCCAGCCAAGGGUCCUU	chr7:10979554-10979858(-)$1	304	23	53	16.7035
CCCGGGAGGAAAGAGCUUUUCCAUUCCUUC	chr15:72502065-72502301(-)$1	236	11	41	16.7034
ACAACUUUGAAGGGGAGGUCACCAAGGAGA	chr17:79805067-79805277(-)$1	210	70	100	15.6538
CCACUGGUCCAGUGGAUUGAAGCAGGACCU	chr3:52019820-52020062(+)$1	242	178	208	16.0105
GUGGAUUCUUCACUAAAGGACGUGAAGUAU	chr15:44045921-44046156(+)$1	235	189	219	14.6043
CGGCUGCAGCCGGAGUUCAAACCUAAGCAG	chr17:49230856-49231117(+)$1	261	129	159	17.7785
CAUGAGGGGGUUCGGAGGCAAGUCCCCGUU	chr15:72500884-72501192(-)$1	308	214	244	14.8777
CAGACUCUUGGGUAAAGACCAACUUAAGUA	chr5:135392252-135392517(+)$1	265	221	251	15.0320
GCACAGCUGGUGCAAUUCGAGGCCGGGCAG	chr5:138260120-138260421(+)$1	301	150	180	17.1795
ACCCAGGAGAACCAAGACCGAGGGACACAC	chr14:95080689-95080974(+)$1	285	191	221	18.2796
CCCUCCUGGUCAGUGUGUUUCCUGACCCUC	chr17:79892429-79892717(-)$1	288	181	211	15.0451
CAUCAAGUGUGCCCCUGGAGUGGUAGGCCC	chrX:153590829-153591046(-)$1	217	116	146	15.2254
gagcccggugccgagaccaagcgacagaCC	chr22:38201213-38201480(+)$1	267	88	118	17.8840
CAACUGUCAGGGGAAGACCUACCUCUUCAA	chr17:26696269-26696524(-)$1	255	184	214	15.7312
CUGGAAGUCGGGCCCUGGGCUGCCCGAUCG	chr8:22277086-22277388(+)$1	302	148	178	16.2409
UCGCAGAAUGGCAAAGAAAAAUGCCAUUGU	chr12:110765520-110765797(+)$1	277	175	205	17.1289
AGCCUCGAAAUGCAGAACGACGCCGGCGAG	chr20:60962277-60962497(+)$1	220	108	138	16.4644
GUCGGAGGUGGGGUCCCUAGUUUCCGCCUC	chr7:43908806-43909076(-)$1	270	52	82	16.9375
AGGCCUGCCCCACCGCCCAUCAGUGGAGGU	chr4:155486946-155487195(+)$1	249	76	106	10.4409
CUCAGGACUAGGUGCUGCGUAACCUAccac	chr20:60884671-60884896(-)$1	225	162	192	14.7535
ACAACUUUGAAGGGGAGGUCACCAAGGAGA	chr17:79805024-79805260(-)$1	236	53	83	15.6538
ACAGGACGGCAGCAGCUACCGGCGGCCCCU	chr17:37070535-37070799(+)$1	264	122	152	16.5999
UCUCUGGGCACAGCCUGGCCCCUGUGCACC	chr14:95090024-95090285(+)$1	261	189	219	14.1157
AAAUCGAGGAAGCACCUCUCAGCCCCUCAG	chr22:29191363-29191627(-)$1	264	175	205	16.1665
GAUGUUCCAGACAAUAAUAAAUGCGCCUGU	chr12:7054949-7055223(+)$1	274	180	210	17.8789
CUGUCGUCUCCCAGCUUCCCGUGGAGGAUG	chr2:10924227-10924527(-)$1	300	61	91	13.7622
UGUUCUCCCAGCUAGAAAGUAAAGUGUGGU	chr11:71155800-71156030(-)$1	230	144	174	10.9513
GCAUGGGCAACGGUAACAACUUCGUCACAG	chr9:116823664-116823880(-)$1	216	114	144	14.9018
UGCUCUGAAGAGACACCCGCCAUUUCACCC	chr15:48624377-48624692(+)$1	315	77	107	11.7793
CCAggccgggggcgucagggagccgggggc	chr14:53162191-53162566(-)$1	375	24	54	18.3682
CUGGCUUGGGACUCUGAACAUGGCCUGGGC	chr20:44049923-44050187(+)$1	264	6	36	17.1134
UGAUGACCAAGGGCCGCUACUCCCUGGACG	chr7:75615756-75616022(+)$1	266	2	32	15.5036
UUGUCUUUUUUUUUUUUUUUUAAAUCUAGG	chr6:75949921-75950186(-)$1	265	56	86	17.2673
UUUCCGUGUCUGUGAUCACAAGCGGACCAU	chr14:24776482-24776780(-)$1	298	128	158	14.8161
AGCGCGAGUCCGCUUCAACUUGAUGGAAAA	chr6:144416226-144416476(-)$1	250	24	54	16.7955
AGCAGGAGAUUGCCACCUACCGCAGCCUGC	chr17:39679813-39680102(-)$1	289	25	55	16.6914
GGGGCGCGCACCGCCUUGACCCGGGCGGCC	chr3:150480603-150480878(-)$1	275	166	196	17.1389
AGACAGCCUGGCUAGAUGGCAAGCAUGUGG	chr15:64448912-64449170(-)$1	258	191	221	17.0257
UCUGUGCUGGGCAUCUGUCUACUGCUCAGU	chr3:184045518-184045884(+)$1	366	232	262	12.1724
UGACCCUGAGACCUCUGUGUUGGUCCUGCG	chr11:62393214-62393448(-)$1	234	83	113	16.7209
CUGUGGCAGACUGAACAUGCACAUGAAUGU	chr21:27484347-27484564(-)$1	217	154	184	16.1862
UGAGUGUUUGUGUGAGGCAGAACCAAACAC	chr1:92182101-92182365(-)$1	264	20	50	17.1134
CUGCCAGCUGGAGCUAUUCACUUCCAGCGU	chr12:58088537-58088779(+)$1	242	55	85	16.6176
UUUCCACGUCUGCUUUAUUACGUAGGAAUC	chr11:130011756-130012029(+)$1	273	32	62	13.8470
CGCAUGGAGGUGACUGUACCCCUCCUUCgu	chr1:55524188-55524419(+)$1	231	123	153	12.1169
GCACCUGUCUGCCAGCCAGAAGGCAUUGAA	chr16:85838450-85838796(+)$1	346	177	207	14.7334
GCAGUCCCGAAGAGUGUAAGAUGUUCGCCU	chr2:176045981-176046226(-)$1	245	85	115	15.4930
CGGUGCGCGUCGUCCCGCUCCAUGGCGCUC	chr5:135364586-135364844(+)$1	258	137	167	17.1289

#DB
(((.(((.(((((........)))))))).	chr6:31625740-31625961(+)$1	1	128	158	16.0314
(((((....((((........))))....)	chr14:94844788-94845017(-)$1	1	180	210	16.4581
((..(((....((........)))))..))	chr19:6719264-6719493(-)$1	1	182	212	17.0674
((((((...((((........))))....)	chr6:7899738-7899996(-)$1	1	79	109	16.3049
(..(((..(((((........))))).)))	chr7:10979554-10979858(-)$1	1	23	53	16.7035
(((((((((((.(........).)))))))	chr15:72502065-72502301(-)$1	1	11	41	16.7034
....((((...((........))..)))).	chr17:79805067-79805277(-)$1	1	70	100	15.6538
((.(.(((((.((........)).))))).	chr3:52019820-52020062(+)$1	1	178	208	16.0105
.)((((.((((((........)))))).))	chr15:44045921-44046156(+)$1	1	189	219	14.6043
(((((((....((........))...))))	chr17:49230856-49231117(+)$1	1	129	159	17.7785
.((((.((((..(........).)))).))	chr15:72500884-72501192(-)$1	1	214	244	14.8777
(.....(((((((........)))))))..	chr5:135392252-135392517(+)$1	1	221	251	15.0320
((...(((.(.((........))).))).)	chr5:138260120-138260421(+)$1	1	150	180	17.1795
(.(((.(.(..((........))..)...)	chr14:95080689-95080974(+)$1	1	191	221	18.2796
((((((.((((((........))))))...	chr17:79892429-79892717(-)$1	1	181	211	15.0451
(.....((.((((........)))).))..	chrX:153590829-153591046(-)$1	1	116	146	15.2254
..(((.(((..((........))....)))	chr22:38201213-38201480(+)$1	1	88	118	17.8840
(...((..(((((........))))).)).	chr17:26696269-26696524(-)$1	1	184	214	15.7312
((((..(((((((........)))))))..	chr8:22277086-22277388(+)$1	1	148	178	16.2409
(((.(.(((((((........))))))).)	chr12:110765520-110765797(+)$1	1	175	205	17.1289
)))((((....((........))...))))	chr20:60962277-60962497(+)$1	1	108	138	16.4644
))))(((((((((........)))))))))	chr7:43908806-43909076(-)$1	1	52	82	16.9375
(((((.(((((((.........)))).)))	chr4:155486946-155487195(+)$1	1	76	106	10.4409
....((..(((((........)))))...)	chr20:60884671-60884896(-)$1	1	162	192	14.7535
....((((...((........))..)))).	chr17:79805024-79805260(-)$1	1	53	83	15.6538
.((((..(((.((........)).))))))	chr17:37070535-37070799(+)$1	1	122	152	16.5999
((.((((((((((........)))))).))	chr14:95090024-95090285(+)$1	1	189	219	14.1157
...((((((..((........)).)))).)	chr22:29191363-29191627(-)$1	1	175	205	16.1665
((.(((.(((.((........))...))).	chr12:7054949-7055223(+)$1	1	180	210	17.8789
(((((((((.(((........))).)))))	chr2:10924227-10924527(-)$1	1	61	91	13.7622
((....((..(((.........)))..)).	chr11:71155800-71156030(-)$1	1	144	174	10.9513
(((..((((((((........)))).....	chr9:116823664-116823880(-)$1	1	114	144	14.9018
.((((((..((((.........))))...)	chr15:48624377-48624692(+)$1	1	77	107	11.7793
((..(((...(((........)))...)))	chr14:53162191-53162566(-)$1	1	24	54	18.3682
((.(((((((.((........)))))))))	chr20:44049923-44050187(+)$1	1	6	36	17.1134
..(((.(((.(((........)))))).))	chr7:75615756-75616022(+)$1	1	2	32	15.5036
((.((((...(((........)))...)))	chr6:75949921-75950186(-)$1	1	56	86	17.2673
((((((.((((((........))))))...	chr14:24776482-24776780(-)$1	1	128	158	14.8161
(((((...(((((........).))))...	chr6:144416226-144416476(-)$1	1	24	54	16.7955
((((((...((((........)))))))))	chr17:39679813-39680102(-)$1	1	25	55	16.6914
(((((.(((.(((........)))))))))	chr3:150480603-150480878(-)$1	1	166	196	17.1389
.((((.((..(((........)))..).).	chr15:64448912-64449170(-)$1	1	191	221	17.0257
)))((((((((((.........))))))))	chr3:184045518-184045884(+)$1	1	232	262	12.1724
((.(.(.(.((((........))))).).)	chr11:62393214-62393448(-)$1	1	83	113	16.7209
(((.((((..(((........)).)..)))	chr21:27484347-27484564(-)$1	1	154	184	16.1862
((.(((((((.((........)))))))))	chr1:92182101-92182365(-)$1	1	20	50	17.1134
((..(((((((((........))))))).)	chr12:58088537-58088779(+)$1	1	55	85	16.6176
..(((((((((((........)))))....	chr11:130011756-130012029(+)$1	1	32	62	13.8470
((((((((((.(.........).)))))))	chr1:55524188-55524419(+)$1	1	123	153	12.1169
...(((...((((........))))....)	chr16:85838450-85838796(+)$1	1	177	207	14.7334
((((...((((.(........).)))).))	chr2:176045981-176046226(-)$1	1	85	115	15.4930
(((.(.(((((((........))))))).)	chr5:135364586-135364844(+)$1	1	137	167	17.1289

#PSSM
e : 0.13	g : 0.11	d : 0.09	c : 0.09	b : 0.07	f : 0.07	: : 0.07	i : 0.05	[ : 0.05	$ : 0.03	= : 0.03	] : 0.01	a : 0.01	! : 0.01	) : 0.01	" : 0.01	H : 0.01	h : 0.01	
d : 0.17	c : 0.11	e : 0.09	b : 0.07	f : 0.07	$ : 0.07	g : 0.07	: : 0.05	! : 0.03	" : 0.03	h : 0.03	i : 0.03	= : 0.03	a : 0.01	[ : 0.01	) : 0.01	
[ : 0.13	d : 0.13	c : 0.11	f : 0.09	e : 0.07	! : 0.07	$ : 0.07	g : 0.05	" : 0.05	i : 0.03	h : 0.03	= : 0.03	) : 0.01	# : 0.01	: : 0.01	
d : 0.15	c : 0.13	g : 0.09	[ : 0.07	! : 0.07	f : 0.07	$ : 0.07	e : 0.03	i : 0.03	a : 0.03	" : 0.03	b : 0.03	h : 0.03	= : 0.03	) : 0.01	# : 0.01	
c : 0.19	d : 0.19	b : 0.11	g : 0.07	i : 0.05	a : 0.05	f : 0.03	[ : 0.03	$ : 0.03	" : 0.03	! : 0.03	h : 0.03	= : 0.03	e : 0.01	# : 0.01	
[ : 0.17	c : 0.15	d : 0.15	b : 0.09	g : 0.07	# : 0.03	f : 0.03	i : 0.03	$ : 0.03	! : 0.03	h : 0.03	" : 0.03	= : 0.03	e : 0.01	a : 0.01	
c : 0.17	d : 0.15	g : 0.15	" : 0.09	[ : 0.09	! : 0.07	b : 0.05	i : 0.03	a : 0.03	= : 0.03	# : 0.01	e : 0.01	h : 0.01	f : 0.01	
d : 0.13	g : 0.13	c : 0.13	" : 0.11	f : 0.09	# : 0.07	! : 0.07	[ : 0.03	i : 0.03	b : 0.03	a : 0.03	= : 0.03	e : 0.01	h : 0.01	
" : 0.13	g : 0.13	e : 0.11	c : 0.11	d : 0.09	# : 0.07	f : 0.07	! : 0.07	[ : 0.05	i : 0.03	= : 0.03	a : 0.01	h : 0.01	
d : 0.23	g : 0.13	e : 0.11	! : 0.11	" : 0.07	f : 0.07	# : 0.05	[ : 0.05	i : 0.03	c : 0.03	= : 0.03	a : 0.01	
d : 0.21	[ : 0.13	c : 0.13	e : 0.09	g : 0.09	f : 0.07	! : 0.07	# : 0.05	i : 0.03	" : 0.03	= : 0.01	a : 0.01	
b : 0.28	d : 0.19	c : 0.13	e : 0.09	g : 0.09	f : 0.07	[ : 0.03	! : 0.01	i : 0.01	= : 0.01	a : 0.01	
b : 0.28	d : 0.17	c : 0.13	e : 0.09	g : 0.09	a : 0.07	f : 0.07	i : 0.01	= : 0.01	r : 0.01	
q : 0.90	r : 0.09	
q : 0.90	r : 0.09	
q : 0.90	r : 0.09	
q : 0.90	r : 0.09	
q : 0.90	r : 0.09	
q : 0.90	r : 0.09	
q : 0.90	r : 0.09	
q : 0.90	r : 0.09	
b : 0.28	d : 0.13	c : 0.11	e : 0.09	a : 0.09	g : 0.09	f : 0.07	r : 0.07	i : 0.01	
b : 0.28	d : 0.17	c : 0.13	e : 0.09	] : 0.09	g : 0.09	f : 0.07	i : 0.01	= : 0.01	
d : 0.23	c : 0.15	g : 0.13	e : 0.09	] : 0.07	f : 0.07	2 : 0.05	3 : 0.05	i : 0.03	= : 0.03	a : 0.01	4 : 0.01	
d : 0.24	g : 0.13	e : 0.11	c : 0.09	3 : 0.09	2 : 0.07	f : 0.07	i : 0.03	] : 0.03	= : 0.03	4 : 0.01	a : 0.01	
d : 0.15	g : 0.15	e : 0.11	c : 0.09	3 : 0.09	4 : 0.07	f : 0.07	2 : 0.05	i : 0.03	a : 0.03	= : 0.03	] : 0.01	h : 0.01	> : 0.01	
g : 0.17	d : 0.13	c : 0.11	4 : 0.09	3 : 0.09	] : 0.07	f : 0.07	2 : 0.05	i : 0.03	= : 0.03	e : 0.01	b : 0.01	h : 0.01	> : 0.01	a : 0.01	
g : 0.17	c : 0.13	d : 0.13	4 : 0.11	] : 0.11	3 : 0.07	i : 0.05	b : 0.05	= : 0.03	2 : 0.01	e : 0.01	h : 0.01	> : 0.01	a : 0.01	
d : 0.15	c : 0.13	4 : 0.11	] : 0.11	3 : 0.09	b : 0.07	g : 0.07	i : 0.05	= : 0.03	e : 0.01	5 : 0.01	2 : 0.01	h : 0.01	> : 0.01	a : 0.01	f : 0.01	
c : 0.13	b : 0.11	d : 0.11	3 : 0.07	] : 0.07	g : 0.07	a : 0.07	i : 0.05	4 : 0.05	f : 0.03	6 : 0.03	= : 0.03	e : 0.01	5 : 0.01	2 : 0.01	h : 0.01	> : 0.01	

#score	819.1984970501526
#seq	52
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_UTR_m2_run2.txt

#BEAR
dddddddd####ddddoooooodddd4444dddd]dd	chr20:4833870-4834127(-)$1	257	210	247	15.6852
[ddddggggggg!!cccnnnnnccc4444ggggggg3	chr1:55316981-55317190(-)$1	209	80	117	13.1665
c[eeeee[bb"""cccooooooccc]bb]eeeee]cc	chr15:41572209-41572465(+)$1	256	57	94	13.6794
===========[ddddqqqqqqqqdddd]========	chr15:99505104-99505374(+)$1	270	1	38	12.8685
$$$============xxxxxxxxxxxxxxx=======	chr6:160527223-160527438(+)$1	215	79	116	11.8511
dd"""bb[ccc[ddddoooooodddd]cccbb333dd	chr6:138411927-138412180(-)$1	253	168	205	15.1068
dd[ggggggg[eeeeeooooooeeeee]ggggggg22	chr2:97405541-97405788(-)$1	247	100	137	14.6511
fffccc===========rrrrrrrrr===========	chr1:160966901-160967117(-)$1	216	38	75	12.0142
c[ggggggg[aa[cccooooooccc]a]a]ggggggg	chr19:3123144-3123456(+)$1	312	47	84	16.3705
!cccccc!!a!!ddddoooooodddd]a22ccc]ccc	chr15:90814932-90815174(+)$1	242	123	160	16.8910
b[dddd[dddd[ddddoooooodddd]dddd]dddd]	chr19:49119888-49120112(-)$1	224	169	206	14.0924
eeeee[bb!!a[ddddoooooodddd]a22bb]eeee	chr17:79803757-79803967(-)$1	210	93	130	14.9760
fffff!!bb[dddd[aooooooa]ddddbb22fffff	chr19:47278353-47278609(-)$1	256	205	242	12.6349
gggggggbb"""eeeeemmmmeeeee]bb]ggggggg	chr19:43011722-43011996(-)$1	274	51	88	11.6717
cccdddd[a####ddddmmmmdddd333a]dddd]cc	chr15:65822907-65823157(+)$1	250	60	97	12.3271
ggggg!!ccc!!ccc[annnnna]ccccccggggggg	chr11:130013292-130013516(+)$1	224	18	55	13.6663
ffff!!bbccc[ddddoooooodddd]ccc]bb22ff	chr11:129997560-129997777(+)$1	217	82	119	14.7215
hhhhhhhhh"""ddddoooooodddd333hhhhhhhh	chr17:79803690-79803957(-)$1	267	164	201	15.1167
cc[dddd[a[a[ddddnnnnndddd]a]a]ddddccc	chr6:29913144-29913363(+)$1	219	77	114	12.7956
ggggggg$$$$$ddddoooooodddd4444ggggggg	chr11:4159575-4159831(+)$1	256	34	71	17.4017
ccc:ddddccc!!cccooooooccc333ccc]dddd:	chrX:53405636-53405896(-)$1	260	189	226	12.7396
###bb####bb[ddddoooooodddd]bb4444bb33	chr12:46754872-46755090(-)$1	218	150	187	14.6656
$$ggggggg"""ddddoooooodddd4444ggggggg	chr12:9243907-9244114(-)$1	207	118	155	18.1978
bbb!!iiiiiiiii[aooooooa]iiiiiiiii]bb5	chr13:30086792-30087030(-)$1	238	29	66	13.1798
[ddddggggggg!!cccnnnnnccc4444ggggggg3	chr1:55316929-55317181(-)$1	252	71	108	13.1665
eeeeeccc"""ccc[cccmmmmccc]ccc333ccc]e	chr22:33256668-33256922(+)$1	254	174	211	11.2655
eeeee[ccc"""ddddnnnnndddd333ccc]eeeee	chr4:74285226-74285430(+)$1	204	108	145	13.8905
""ccc[cccccc[ddddnnnnndddd22ccc]ccc]c	chr17:15340339-15340595(-)$1	256	155	192	13.2469
"""ggggggg"""cccoooooocccggggggg333bb	chr3:49570587-49570844(+)$1	257	111	148	15.5061
e$$$$$eeeee[ddddooooooddddeeeee22eeee	chrX:100646640-100646864(+)$1	224	124	161	12.9290
iii"""ccc"""cccqqqqqqqqccc333ccc22iii	chr11:62397799-62398031(-)$1	232	178	215	12.4029
!!===========zzzzzzzzzzzzzzzzz=======	chr9:4711543-4711802(-)$1	259	24	61	11.4902
ddd!!ccc####ddddccclllccc22ddddccc22d	chr2:85545600-85545832(-)$1	232	155	192	12.0468
=========[ffffffooooooffffff22=======	chr22:45737112-45737354(+)$1	242	20	57	13.9559
ggggggg[gggggggrrrrrrrrrggggggggggggg	chr14:31380146-31380415(-)$1	269	52	89	11.8762
b[ccc"""a!!eeeeennnnneeeee22accc]bb]c	chr1:153932190-153932452(-)$1	262	223	260	11.9080
gggggdddd!!cccooooooccc]dddd4444ggggg	chr1:155217189-155217467(-)$1	278	225	262	13.0913
dddd"""bb"""ddddccclllccc]dddd333bb44	chr17:38436550-38436820(+)$1	270	216	253	12.0065
bbb"""ggggggg[bboooooobbggggggg333bb3	chr11:118924734-118925011(-)$1	277	98	135	12.3439
=========="""ddddllldddd333==========	chr11:62397754-62397997(-)$1	243	197	234	14.9116
fffffcccbb[eeeeeooooooeeeee]bb]ccc888	chr15:77348311-77348584(-)$1	273	146	183	11.6231
hhhhhh[dddd[ddddoooooodddddddd22hhhhh	chr20:2448225-2448470(-)$1	245	180	217	13.1324
eeeffffff!!eeeeeooooooeeeee]ffffff333	chr2:223808118-223808402(+)$1	284	175	212	13.2204
c==========[ddddpppppppdddd]=========	chr10:102121453-102121692(+)$1	239	136	173	12.6429
fff[a!!dddd[ddddoooooodddddddd22a]fff	chr10:74767443-74767700(-)$1	257	36	73	14.4273
ggggggg[ccc[cccssssssssssccc]cccggggg	chr2:183582573-183582867(+)$1	294	215	252	10.9700
ccc!!dddd!!eeeeeooooooeeeeeddddccceee	chr4:129190728-129190980(-)$1	252	101	138	13.5831
c"""ggggggg[a!!aooooooa22a]ggggggg22c	chrX:131511136-131511380(-)$1	244	80	117	14.7235
ddddccc"""ccc!!ddddllldddd4444ccc333c	chr3:33133461-33133743(-)$1	282	7	44	12.7184
gggggggccc[cccooooooccc]ccc4444gggggg	chr1:234740475-234740748(-)$1	273	189	226	13.6150

#otherMatches

#Seq PSSM
GGCCGUGCAUGGGGUGUACACUCGCUAUAGGCAUAGG	chr20:4833870-4834127(-)$1	257	210	247	15.6852
AGAGUGGUCUCCGCUCUGAAUUGGAUCCAGGGGACCU	chr1:55316981-55317190(-)$1	209	80	117	13.1665
UGCACUCUGCUCUGUCAUCAAAGGCUGCUGGGUGGAG	chr15:41572209-41572465(+)$1	256	57	94	13.6794
UGCGGAGUCACAUUUCAAUGGUACGAAAAGUGGCUUC	chr15:99505104-99505374(+)$1	270	1	38	12.8685
AGGGAGGCGCUGCUGGUGUUCUUAUUCUGGCGGCAGC	chr6:160527223-160527438(+)$1	215	79	116	11.8511
UUAAAUAUCAGAUUAUUAUUUUGUAAGUUGUGGAAAA	chr6:138411927-138412180(-)$1	253	168	205	15.1068
UCUUUUGUUGGGGUCUGGGCAGGGGCCACAGCAAGUC	chr2:97405541-97405788(-)$1	247	100	137	14.6511
GUGCUUUAGUAGUAGUUUAAAGUAGUAACUGCUACUG	chr1:160966901-160967117(-)$1	216	38	75	12.0142
CGUGGCCUGAGGGUGGAGUCGCCCAGCACGCAGGCCG	chr19:3123144-3123456(+)$1	312	47	84	16.3705
ACAGCUGGGCAAGUAUUAAUGUAUAUGGAACAGCCUG	chr15:90814932-90815174(+)$1	242	123	160	16.8910
cuguacugugcugugcugugcugugcugugcugugcu	chr19:49119888-49120112(-)$1	224	169	206	14.0924
CCUCCAGCCCCACCUGAUGAGCCAGGAGCUGCCGGAG	chr17:79803757-79803967(-)$1	210	93	130	14.9760
ACAACACCAUGCUGGUUAUUUUGGCGGCUGUAGUUGU	chr19:47278353-47278609(-)$1	256	205	242	12.6349
UGGCAUUGUUUACAGCUAGAAAGCUGCACUGGUGCUA	chr19:43011722-43011996(-)$1	274	51	88	11.6717
CCAUGGAGAAUCAGGUGUUGACGCCGCAUGUCUACUG	chr15:65822907-65823157(+)$1	250	60	97	12.3271
ACCUACAAAUACCUGGAGCAGAUGCAGAUUUAGGUGG	chr11:130013292-130013516(+)$1	224	18	55	13.6663
UUUUGACCUUUGUUCUAGGUAAAGAAGGAAUGGGAAG	chr11:129997560-129997777(+)$1	217	82	119	14.7215
UGAAGACGUGGCUUUUGAUGAGAAAAAAAACGUCUUU	chr17:79803690-79803957(-)$1	267	164	201	15.1167
CUAUAGUGUGAGACAGCUGCCUUGUGUGGGACUGAGA	chr6:29913144-29913363(+)$1	219	77	114	12.7956
CUGAGGAAAGACUUGGAAGAGACCAGCAUGUCUUCAG	chr11:4159575-4159831(+)$1	256	34	71	17.4017
AGGAUCAUGCAGAGGCAGCAAAGCCGGGUGCGAUGAG	chrX:53405636-53405896(-)$1	260	189	226	12.7396
UGAUUGUUUUGGAUUGGGUACACAAUGCACCUGGAGG	chr12:46754872-46755090(-)$1	218	150	187	14.6656
CAGUCCCUGACACCAUCACCGAGUGGAAGGCAGGGGC	chr12:9243907-9244114(-)$1	207	118	155	18.1978
CCAGAAGGUUCUUGGAGAGAAGUGCAAGAAUUUGUGA	chr13:30086792-30087030(-)$1	238	29	66	13.1798
AGAGUGGUCUCCGCUCUGAAUUGGAUCCAGGGGACCU	chr1:55316929-55317181(-)$1	252	71	108	13.1665
AAUUGUUGGUCACUGGGGAAAGCCUGAGUUUGCAACC	chr22:33256668-33256922(+)$1	254	174	211	11.2655
GGAGACCUGCUUUGCCGAGGAGGUACUACAGUUCUCU	chr4:74285226-74285430(+)$1	204	108	145	13.8905
gcuuuugugaguguuggaaaaaccaaaaacugcauug	chr17:15340339-15340595(-)$1	256	155	192	13.2469
AGACCGGUGGCCUGCAGACCAUUGCCCACCGGGAGCC	chr3:49570587-49570844(+)$1	257	111	148	15.5061
GCAGAGUGGCUAUGGUGGGCAAACUAAGCCGAUUUUC	chrX:100646640-100646864(+)$1	224	124	161	12.9290
CAGGUAAGCAGACCCAGAAUUGAGGGAGAGUUGAUUG	chr11:62397799-62398031(-)$1	232	178	215	12.4029
UGAGCAGCCAUUUAAAAAUUGGAAUCUAAAGGAUGGU	chr9:4711543-4711802(-)$1	259	24	61	11.4902
CCAUUUUCUGAAAACCCCUGUUAGGAAGGUUGGAUUU	chr2:85545600-85545832(-)$1	232	155	192	12.0468
CUUUGGAAUUAGGUUGUUUUAGUAACUUCUGUUCCAA	chr22:45737112-45737354(+)$1	242	20	57	13.9559
CUGUUCUGUCAUUAGCUAUUAGUUCUAAUGGAGAACA	chr14:31380146-31380415(-)$1	269	52	89	11.8762
UGUGGAACGGGUAUGGACAGGUCAUAAACCUAGAGUC	chr1:153932190-153932452(-)$1	262	223	260	11.9080
GCAUGGCCCAGGUGUUUAAGUACAGGGUGACGUGUGC	chr1:155217189-155217467(-)$1	278	225	262	13.0913
ggaaaaggagagaguacaagaguugauacugCAUCAG	chr17:38436550-38436820(+)$1	270	216	253	12.0065
CGUAUGCACCAUUGUGACCUACCAGAUGGUGAAGACU	chr11:118924734-118925011(-)$1	277	98	135	12.3439
GGUGGCUCUUUUGCCCCUUAGGGGAUUGAGAGCCACC	chr11:62397754-62397997(-)$1	243	197	234	14.9116
ACAAUCCGGGAAAGUCGCUGUGGACUUGCCACGGUAA	chr15:77348311-77348584(-)$1	273	146	183	11.6231
UUGAUCCUCUGUGACUGUGAUGAGUUCAGAAAGAUCA	chr20:2448225-2448470(-)$1	245	180	217	13.1324
GAGGCAGGCUUAAACUCUAUUUAGUUUCGUUUGUUUU	chr2:223808118-223808402(+)$1	284	175	212	13.2204
cagcagcucauagaauuuugaguauuccaugagcugc	chr10:102121453-102121692(+)$1	239	136	173	12.6429
AGUAUUUCACUACAUCUCAGUUGGUGGGUGUUAAGCU	chr10:74767443-74767700(-)$1	257	36	73	14.4273
AAUCAGAACUUGCAUAAGAAAGAGAAUGGGAGUCUGG	chr2:183582573-183582867(+)$1	294	215	252	10.9700
UGACUACUUAGGUUCCGGGCUGGGGACAAGUUCACUU	chr4:129190728-129190980(-)$1	252	101	138	13.5831
UCAUGUAUGGAACUGAGUUUUGUAUGAUCCGUGCCAG	chrX:131511136-131511380(-)$1	244	80	117	14.7235
GAAUGCAAAGCUCCUCCUGUUCCAGGCCUUGAGGGAU	chr3:33133461-33133743(-)$1	282	7	44	12.7184
CAUCGGGACAUGGGUUUGAUCUUUUGUUGUACCUGAU	chr1:234740475-234740748(-)$1	273	189	226	13.6150

#DB
((((((((....((((......))))....)))).))	chr20:4833870-4834127(-)$1	1	210	247	15.6852
.(((((((((((..(((.....)))....))))))).	chr1:55316981-55317190(-)$1	1	80	117	13.1665
(.(((((.((...(((......))).)).))))).))	chr15:41572209-41572465(+)$1	1	57	94	13.6794
(((((((((((.((((........)))).))))))))	chr15:99505104-99505374(+)$1	1	1	38	12.8685
...((((((((((((...............)))))))	chr6:160527223-160527438(+)$1	1	79	116	11.8511
((...((.(((.((((......)))).)))))...))	chr6:138411927-138412180(-)$1	1	168	205	15.1068
((.(((((((.(((((......))))).)))))))..	chr2:97405541-97405788(-)$1	1	100	137	14.6511
))))))(((((((((((.........)))))))))))	chr1:160966901-160967117(-)$1	1	38	75	12.0142
(.(((((((.((.(((......))).).).)))))))	chr19:3123144-3123456(+)$1	1	47	84	16.3705
.((((((..(..((((......)))).)..))).)))	chr15:90814932-90815174(+)$1	1	123	160	16.8910
(.((((.((((.((((......)))).)))).)))).	chr19:49119888-49120112(-)$1	1	169	206	14.0924
(((((.((..(.((((......)))).)..)).))))	chr17:79803757-79803967(-)$1	1	93	130	14.9760
(((((..((.((((.(......).))))))..)))))	chr19:47278353-47278609(-)$1	1	205	242	12.6349
(((((((((...(((((....))))).)).)))))))	chr19:43011722-43011996(-)$1	1	51	88	11.6717
(((((((.(....((((....))))...).)))).))	chr15:65822907-65823157(+)$1	1	60	97	12.3271
(((((..(((..(((.(.....).)))))))))))))	chr11:130013292-130013516(+)$1	1	18	55	13.6663
((((..(((((.((((......)))).))).))..))	chr11:129997560-129997777(+)$1	1	82	119	14.7215
(((((((((...((((......))))...))))))))	chr17:79803690-79803957(-)$1	1	164	201	15.1167
((.((((.(.(.((((.....)))).).).)))))))	chr6:29913144-29913363(+)$1	1	77	114	12.7956
(((((((.....((((......))))....)))))))	chr11:4159575-4159831(+)$1	1	34	71	17.4017
))).(((((((..(((......)))...))).)))).	chrX:53405636-53405896(-)$1	1	189	226	12.7396
...((....((.((((......)))).))....))..	chr12:46754872-46755090(-)$1	1	150	187	14.6656
..(((((((...((((......))))....)))))))	chr12:9243907-9244114(-)$1	1	118	155	18.1978
(((..(((((((((.(......).))))))))).)).	chr13:30086792-30087030(-)$1	1	29	66	13.1798
.(((((((((((..(((.....)))....))))))).	chr1:55316929-55317181(-)$1	1	71	108	13.1665
((((((((...(((.(((....))).)))...))).)	chr22:33256668-33256922(+)$1	1	174	211	11.2655
(((((.(((...((((.....))))...))).)))))	chr4:74285226-74285430(+)$1	1	108	145	13.8905
..(((.((((((.((((.....))))..))).))).)	chr17:15340339-15340595(-)$1	1	155	192	13.2469
...(((((((...(((......))))))))))...))	chr3:49570587-49570844(+)$1	1	111	148	15.5061
(.....(((((.((((......)))))))))..))))	chrX:100646640-100646864(+)$1	1	124	161	12.9290
(((...(((...(((........)))...)))..)))	chr11:62397799-62398031(-)$1	1	178	215	12.4029
..(((((((((((.................)))))))	chr9:4711543-4711802(-)$1	1	24	61	11.4902
(((..(((....(((((((...)))..)))))))..)	chr2:85545600-85545832(-)$1	1	155	192	12.0468
(((((((((.((((((......))))))..)))))))	chr22:45737112-45737354(+)$1	1	20	57	13.9559
(((((((.(((((((.........)))))))))))))	chr14:31380146-31380415(-)$1	1	52	89	11.8762
(.(((...(..(((((.....)))))..)))).)).)	chr1:153932190-153932452(-)$1	1	223	260	11.9080
(((((((((..(((......))).))))....)))))	chr1:155217189-155217467(-)$1	1	225	262	13.0913
((((...((...(((((((...))).))))...))..	chr17:38436550-38436820(+)$1	1	216	253	12.0065
(((...(((((((.((......)))))))))...)).	chr11:118924734-118925011(-)$1	1	98	135	12.3439
((((((((((...((((...))))...))))))))))	chr11:62397754-62397997(-)$1	1	197	234	14.9116
((((((((((.(((((......))))).)).)))...	chr15:77348311-77348584(-)$1	1	146	183	11.6231
((((((.((((.((((......))))))))..)))))	chr20:2448225-2448470(-)$1	1	180	217	13.1324
(((((((((..(((((......))))).))))))...	chr2:223808118-223808402(+)$1	1	175	212	13.2204
(((((((((((.((((.......)))).)))))))))	chr10:102121453-102121692(+)$1	1	136	173	12.6429
(((.(..((((.((((......))))))))..).)))	chr10:74767443-74767700(-)$1	1	36	73	14.4273
(((((((.(((.(((..........))).))))))))	chr2:183582573-183582867(+)$1	1	215	252	10.9700
(((..((((..(((((......))))))))))))(((	chr4:129190728-129190980(-)$1	1	101	138	13.5831
(...(((((((.(..(......)..).)))))))..)	chrX:131511136-131511380(-)$1	1	80	117	14.7235
(((((((...(((..((((...))))....)))...)	chr3:33133461-33133743(-)$1	1	7	44	12.7184
((((((((((.(((......))).)))....))))))	chr1:234740475-234740748(-)$1	1	189	226	13.6150

#PSSM
c : 0.16	g : 0.14	d : 0.12	f : 0.10	e : 0.10	b : 0.08	= : 0.06	[ : 0.04	$ : 0.04	! : 0.04	h : 0.04	" : 0.04	# : 0.02	i : 0.02	
d : 0.16	g : 0.14	f : 0.10	c : 0.10	[ : 0.08	= : 0.08	e : 0.08	$ : 0.06	" : 0.06	h : 0.04	b : 0.04	# : 0.02	i : 0.02	! : 0.02	
g : 0.18	d : 0.14	c : 0.12	e : 0.10	= : 0.10	f : 0.10	" : 0.06	$ : 0.04	[ : 0.04	h : 0.04	b : 0.04	# : 0.02	i : 0.02	
g : 0.21	d : 0.16	= : 0.12	e : 0.08	" : 0.08	c : 0.08	f : 0.08	! : 0.06	h : 0.04	: : 0.02	b : 0.02	$ : 0.02	[ : 0.02	
g : 0.23	d : 0.14	= : 0.12	c : 0.10	e : 0.08	" : 0.08	! : 0.08	f : 0.06	h : 0.04	b : 0.02	$ : 0.02	a : 0.02	
g : 0.23	d : 0.14	= : 0.12	c : 0.12	! : 0.08	" : 0.08	[ : 0.06	h : 0.04	e : 0.02	b : 0.02	# : 0.02	i : 0.02	$ : 0.02	f : 0.02	
g : 0.25	c : 0.16	= : 0.14	d : 0.12	b : 0.06	! : 0.06	e : 0.04	[ : 0.04	" : 0.04	h : 0.02	# : 0.02	i : 0.02	f : 0.02	
g : 0.16	c : 0.16	d : 0.14	= : 0.14	[ : 0.12	b : 0.10	" : 0.04	! : 0.02	h : 0.02	$ : 0.02	# : 0.02	i : 0.02	e : 0.02	f : 0.02	
g : 0.18	c : 0.18	= : 0.14	b : 0.10	d : 0.10	# : 0.06	a : 0.06	! : 0.04	" : 0.04	h : 0.02	$ : 0.02	i : 0.02	e : 0.02	f : 0.02	
" : 0.16	g : 0.14	c : 0.14	= : 0.12	! : 0.10	[ : 0.08	# : 0.06	b : 0.06	d : 0.06	a : 0.02	$ : 0.02	i : 0.02	e : 0.02	
" : 0.19	c : 0.12	! : 0.12	g : 0.10	= : 0.10	d : 0.08	# : 0.06	[ : 0.06	a : 0.06	$ : 0.02	b : 0.02	i : 0.02	e : 0.02	f : 0.02	
[ : 0.25	" : 0.18	e : 0.10	c : 0.10	g : 0.08	# : 0.06	= : 0.06	! : 0.06	a : 0.02	d : 0.02	$ : 0.02	i : 0.02	f : 0.02	
d : 0.40	c : 0.14	e : 0.12	! : 0.06	" : 0.06	= : 0.06	[ : 0.04	g : 0.04	# : 0.02	i : 0.02	f : 0.02	a : 0.02	
d : 0.46	c : 0.19	e : 0.12	! : 0.08	= : 0.04	i : 0.02	z : 0.02	f : 0.02	g : 0.02	[ : 0.02	
d : 0.44	c : 0.18	e : 0.12	[ : 0.06	= : 0.04	o : 0.04	! : 0.04	z : 0.02	f : 0.02	g : 0.02	b : 0.02	
d : 0.46	c : 0.14	e : 0.12	a : 0.06	o : 0.04	x : 0.02	= : 0.02	[ : 0.02	q : 0.02	z : 0.02	f : 0.02	r : 0.02	b : 0.02	s : 0.02	
o : 0.56	c : 0.10	d : 0.08	n : 0.06	q : 0.04	x : 0.02	= : 0.02	e : 0.02	a : 0.02	z : 0.02	r : 0.02	p : 0.02	s : 0.02	
o : 0.56	n : 0.14	c : 0.06	q : 0.04	r : 0.04	m : 0.04	x : 0.02	z : 0.02	l : 0.02	p : 0.02	s : 0.02	d : 0.02	
o : 0.56	n : 0.14	m : 0.06	q : 0.04	r : 0.04	c : 0.04	x : 0.02	z : 0.02	l : 0.02	p : 0.02	s : 0.02	d : 0.02	
o : 0.56	n : 0.14	l : 0.08	m : 0.06	q : 0.04	r : 0.04	x : 0.02	z : 0.02	p : 0.02	s : 0.02	
o : 0.52	n : 0.14	m : 0.06	l : 0.06	q : 0.04	r : 0.04	c : 0.04	x : 0.02	z : 0.02	d : 0.02	p : 0.02	s : 0.02	
o : 0.52	n : 0.08	d : 0.08	l : 0.06	q : 0.04	r : 0.04	e : 0.04	c : 0.04	x : 0.02	m : 0.02	z : 0.02	p : 0.02	s : 0.02	
d : 0.38	c : 0.21	e : 0.12	a : 0.08	q : 0.04	r : 0.04	x : 0.02	z : 0.02	f : 0.02	b : 0.02	p : 0.02	s : 0.02	
d : 0.40	c : 0.19	e : 0.12	] : 0.10	r : 0.04	q : 0.02	x : 0.02	z : 0.02	f : 0.02	b : 0.02	s : 0.02	2 : 0.02	
d : 0.44	c : 0.23	e : 0.12	g : 0.04	x : 0.02	r : 0.02	i : 0.02	z : 0.02	f : 0.02	3 : 0.02	s : 0.02	2 : 0.02	
d : 0.38	e : 0.12	] : 0.10	3 : 0.08	c : 0.08	g : 0.06	4 : 0.04	x : 0.02	r : 0.02	i : 0.02	z : 0.02	2 : 0.02	f : 0.02	a : 0.02	
] : 0.16	d : 0.14	4 : 0.12	3 : 0.12	e : 0.10	c : 0.08	2 : 0.06	g : 0.06	a : 0.04	b : 0.02	x : 0.02	= : 0.02	i : 0.02	z : 0.02	f : 0.02	
d : 0.18	4 : 0.14	] : 0.12	c : 0.10	3 : 0.10	g : 0.08	b : 0.06	= : 0.04	a : 0.04	2 : 0.04	x : 0.02	i : 0.02	e : 0.02	z : 0.02	f : 0.02	
4 : 0.16	c : 0.14	d : 0.12	g : 0.10	a : 0.08	b : 0.08	] : 0.06	= : 0.06	2 : 0.06	3 : 0.04	x : 0.02	i : 0.02	e : 0.02	z : 0.02	f : 0.02	
c : 0.18	4 : 0.14	g : 0.14	d : 0.12	= : 0.08	] : 0.08	2 : 0.06	e : 0.04	b : 0.04	x : 0.02	h : 0.02	i : 0.02	3 : 0.02	z : 0.02	f : 0.02	
g : 0.23	c : 0.16	= : 0.14	d : 0.12	2 : 0.06	4 : 0.06	e : 0.04	b : 0.04	] : 0.04	3 : 0.04	h : 0.02	i : 0.02	f : 0.02	
g : 0.23	c : 0.16	= : 0.14	] : 0.08	2 : 0.08	d : 0.06	b : 0.06	3 : 0.06	4 : 0.04	e : 0.02	h : 0.02	i : 0.02	f : 0.02	
g : 0.25	= : 0.14	c : 0.14	d : 0.10	3 : 0.08	e : 0.04	] : 0.04	f : 0.04	h : 0.04	2 : 0.04	b : 0.02	4 : 0.02	i : 0.02	a : 0.02	
g : 0.25	= : 0.14	d : 0.10	c : 0.10	e : 0.08	3 : 0.08	] : 0.06	b : 0.06	f : 0.04	2 : 0.04	h : 0.04	
g : 0.23	= : 0.14	b : 0.10	3 : 0.08	c : 0.08	e : 0.08	] : 0.06	2 : 0.06	d : 0.04	f : 0.04	h : 0.04	i : 0.02	8 : 0.02	
g : 0.21	= : 0.14	d : 0.08	c : 0.08	e : 0.08	2 : 0.06	f : 0.06	3 : 0.06	b : 0.06	] : 0.06	h : 0.04	i : 0.02	4 : 0.02	8 : 0.02	
g : 0.18	c : 0.16	= : 0.14	3 : 0.10	e : 0.10	d : 0.06	f : 0.06	h : 0.04	2 : 0.02	] : 0.02	: : 0.02	5 : 0.02	b : 0.02	i : 0.02	4 : 0.02	8 : 0.02	

#score	677.1676276907205
#seq	50
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_transcript_m3_run1.txt

#BEAR
bbeeeee[bboooooobb]eeeee]b	chr12:123062136-123062421(+)$1	285	164	190	12.5249
ggggg[ddddooooooddddgggggg	chr6:131998929-131999179(+)$1	250	42	68	12.8535
[ffffff[bboooooobb]ffffffc	chr4:25395831-25396099(+)$1	268	140	166	12.6413
:iiiiiiiiiooooooiiiiiiiii:	chrX:2873349-2873673(-)$1	324	235	261	12.2742
==========oooooo==========	chr2:109068744-109069013(+)$1	269	94	120	14.4421
cceeeee[bboooooobb]eeeee22	chr5:1088996-1089251(-)$1	255	16	42	12.6229
"""eeeee[aooooooaeeeee333d	chr22:50683841-50684059(-)$1	218	139	165	13.1067
bb[gggggggooooooggggggg]bb	chr3:171969181-171969438(+)$1	257	27	53	13.2407
iiiiiiiibboooooobb22iiiiii	chr4:24541693-24541984(-)$1	291	233	259	14.0883
dddgggggggooooooggggggg]dd	chr2:198288431-198288708(-)$1	277	207	233	13.2200
$$$gggggggooooooggggggghhh	chr6:1726527-1726811(-)$1	284	247	273	12.5945
dddd[eeeeeooooooeeeee333dd	chr10:105526741-105527026(-)$1	285	98	124	12.2383
ff!!ccc[cccnnnnnccc]cccfff	chr20:25470410-25470617(-)$1	207	131	157	8.4482
eeeeeeeeeeooooooeeeee22eee	chr17:80895823-80896038(+)$1	215	6	32	11.5092
hhhhhhhh[aooooooa333hhhhhh	chr1:43124431-43124681(+)$1	250	123	149	11.5328
dd!!ccca[aooooooa]a]ccc]dd	chr1:205495116-205495408(+)$1	292	28	54	12.8560
ddddddddddoooooodddd]dddd]	chr9:133507235-133507513(+)$1	278	39	65	10.5903
!!eeeee[bboooooobbeeeee22b	chr17:80007690-80007929(-)$1	239	47	73	12.9041
ffff"""cccooooooccc]ffffff	chr14:71063221-71063487(-)$1	266	57	83	12.3684
bb[bb[ddddoooooodddd]bb]bb	chr16:67997266-67997479(-)$1	213	127	153	10.9348
ggggggg[bboooooobb22gggggg	chr19:10490958-10491185(-)$1	227	38	64	13.9925
=======rrrrrrrrr==========	chr7:40221488-40221728(+)$1	240	28	54	9.1383
###gggggggnnnnnggggggg4444	chr16:84766980-84767213(+)$1	233	108	134	8.8277
hhhh"""cccooooooccc]hhhhhh	chr20:39802830-39803051(+)$1	221	38	64	11.9138
gggg!!ddddooooooddddgggggg	chr3:58094820-58095041(+)$1	221	167	193	12.8484
ffffff[cccooooooccc]ffffff	chr3:184105649-184105906(+)$1	257	13	39	12.2303
e[bb####bboooooobb333bb22e	chr19:39966655-39966888(+)$1	233	145	171	12.2819
eeeeccc[bboooooobbccc22eee	chr10:79613012-79613261(-)$1	249	105	131	12.6560
###bb[a[bboooooobbabb333cc	chr19:47880302-47880560(+)$1	258	195	221	12.8815
fffdddd[bboooooobb]dddd]ff	chr2:75107308-75107563(+)$1	255	6	32	12.1980
:iiiiiiiiiooooooiiiiiiiiiF	chr19:18650259-18650525(-)$1	266	140	166	12.7770
ff!!ffffffooooooffffff22ff	chr17:3480906-3481148(-)$1	242	17	43	11.8393
eeeeffffffooooooffffff22ee	chr9:117050634-117050839(+)$1	205	63	89	11.5178
::ccc[cccaooooooa]ccc]cccE	chr4:3131649-3131867(+)$1	218	28	54	10.1395
cccccc!!bboooooobb]ccc]ccc	chr17:79567313-79567552(-)$1	239	178	204	13.4781
iiiiiiiiirrrrrrrrriiiiiiii	chr13:96295761-96296037(-)$1	276	104	130	9.0742
iiiiiiicccnnnnnccc]iiiiiii	chr11:9165650-9165919(-)$1	269	33	59	9.5806
[dddd"""bboooooobb333ddddd	chr14:24740020-24740240(-)$1	220	78	104	12.3027
dddd[eeeeeooooooeeeee333dd	chr17:78195413-78195699(+)$1	286	11	37	12.2383
gccc!!ddddoooooodddd333ccc	chr14:24113965-24114176(+)$1	211	59	85	12.5828
e####eeeeeooooooeeeee333ee	chr9:136531756-136532000(-)$1	244	109	135	12.5178
bb[gggggggooooooggggggg]bb	chr20:62577069-62577292(-)$1	223	140	166	13.2407
[bbcccddddoooooodddd]ccc22	chr2:42282042-42282252(+)$1	210	79	105	11.4517
ffffff!!bboooooobb22ffffff	chr16:68591826-68592084(+)$1	258	5	31	12.3822
e[hhhhhhhhoooooohhhhhhhh22	chr19:19767809-19768058(-)$1	249	152	178	10.8365
dd[gggggggooooooggggggg22d	chrX:70516315-70516551(+)$1	236	162	188	13.4622

#otherMatches

#Seq PSSM
GACUGGCAUUACAAGAAGAGCCAGAU	chr12:123062136-123062421(+)$1	285	164	190	12.5249
AUUGAUAAUAUAUUUCUGUUUCAAUU	chr6:131998929-131999179(+)$1	250	42	68	12.8535
ACUUGCUAUUAUGGGGGAAAGCAAGG	chr4:25395831-25396099(+)$1	268	140	166	12.6413
CUGCACUAGGGUGCAGCCUGGUGUAU	chrX:2873349-2873673(-)$1	324	235	261	12.2742
UUUUUUAAUUGUUUAGAAUUGGAGAA	chr2:109068744-109069013(+)$1	269	94	120	14.4421
CAUGGGCACCUUCAUCGGCGUCUACC	chr5:1088996-1089251(-)$1	255	16	42	12.6229
gagcauuuacaccgcagaaauGACAC	chr22:50683841-50684059(-)$1	218	139	165	13.1067
AUGGCUAUGGGAAGGGCCAUAGUGGU	chr3:171969181-171969438(+)$1	257	27	53	13.2407
CUAUUACUGCUAUGUUGUCAGGUAAU	chr4:24541693-24541984(-)$1	291	233	259	14.0883
UAUUUUUUUGAGAGAGCAAGAAAUAU	chr2:198288431-198288708(-)$1	277	207	233	13.2200
UUUGGAGCUGUCAGUUCAGCUCCCUG	chr6:1726527-1726811(-)$1	284	247	273	12.5945
GAUGCAGCUUUUGGAUAAGUUUCCCA	chr10:105526741-105527026(-)$1	285	98	124	12.2383
CCUCCAGAGGGGAGGGCCUGCUGGGC	chr20:25470410-25470617(-)$1	207	131	157	8.4482
GCCCAGGUCUCUGCAUGGGCCUUUGG	chr17:80895823-80896038(+)$1	215	6	32	11.5092
UGCCUAAGACGGCCGAGAACUUUAGG	chr1:43124431-43124681(+)$1	250	123	149	11.5328
CCAGCAGCACCUGAAUGCGCCUGGGG	chr1:205495116-205495408(+)$1	292	28	54	12.8560
ACGAGCCCUCUGUUGUGAGGCGCUCA	chr9:133507235-133507513(+)$1	278	39	65	10.5903
GUGACCACGGUCAAGUUCUGGUUUGC	chr17:80007690-80007929(-)$1	239	47	73	12.9041
UCUGUUUUCAGUCAGAUGGUUGGAAU	chr14:71063221-71063487(-)$1	266	57	83	12.3684
UUUUGGGCCACAGGUUUGGCACACAG	chr16:67997266-67997479(-)$1	213	127	153	10.9348
GGUCCUCAGGAAGAAGCCGCGGGGAC	chr19:10490958-10491185(-)$1	227	38	64	13.9925
AUGGUAAUUAAUUUAUUUAUCAUUUU	chr7:40221488-40221728(+)$1	240	28	54	9.1383
ACUCCUCGAUCUUCAGUUGAGGUAAG	chr16:84766980-84767213(+)$1	233	108	134	8.8277
GAAUCCCGCUACCAGCAGCCGUUUGA	chr20:39802830-39803051(+)$1	221	38	64	11.9138
CCAUCAAGCACACCAUUGCUGUGGUC	chr3:58094820-58095041(+)$1	221	167	193	12.8484
GGCAGGAGGCUUAUGUGCCCCCUGCC	chr3:184105649-184105906(+)$1	257	13	39	12.2303
CACCAAGAACAACAAGGUAAGGGCAG	chr19:39966655-39966888(+)$1	233	145	171	12.2819
GAGGACCAGAAGGAGAUCGGUGACCU	chr10:79613012-79613261(-)$1	249	105	131	12.6560
AUAUGAGAGCUGCGUUGCCCAGGGUG	chr19:47880302-47880560(+)$1	258	195	221	12.8815
UGGGCAACUGUCUAACUAUUUGCACC	chr2:75107308-75107563(+)$1	255	6	32	12.1980
UCUGGGUGACUGUGACGUCAUCCAGG	chr19:18650259-18650525(-)$1	266	140	166	12.7770
UGUGACCUUUUGUUCUGGGGGUGCCA	chr17:3480906-3481148(-)$1	242	17	43	11.8393
CAGGCGGUUUGCCCUAAAGCUGGUUC	chr9:117050634-117050839(+)$1	205	63	89	11.5178
UUGGGCCUGCAGAUUGGACAGCCCCA	chr4:3131649-3131867(+)$1	218	28	54	10.1395
UGCGGAAGGUACUGAGGCAUCCGGCA	chr17:79567313-79567552(-)$1	239	178	204	13.4781
gagcaagagagaccacagcucuuguu	chr13:96295761-96296037(-)$1	276	104	130	9.0742
CUCUUCCUGUGAGCAGCAGGGAGGAG	chr11:9165650-9165919(-)$1	269	33	59	9.5806
UCCUUGUAGCACGGACGCCUGAAGGU	chr14:24740020-24740240(-)$1	220	78	104	12.3027
CUGCUGCUGCUCCCCUGCGGCCCUGC	chr17:78195413-78195699(+)$1	286	11	37	12.2383
CCUUUGCCCAGUUUCAUGGGAAUGAG	chr14:24113965-24114176(+)$1	211	59	85	12.5828
CCUACGGUUACAUCCAUGACCCCAGC	chr9:136531756-136532000(-)$1	244	109	135	12.5178
CCAGGGCCCUGCAGAGGGGGCCUCGG	chr20:62577069-62577292(-)$1	223	140	166	13.2407
CACUGCGUCCUCUGCUGGACAGCAUC	chr2:42282042-42282252(+)$1	210	79	105	11.4517
AUGUUCCCAGCAUUGCCUUAGAACAU	chr16:68591826-68592084(+)$1	258	5	31	12.3822
UUACGCUAUCCAUGCUGGUGGCGUUC	chr19:19767809-19768058(-)$1	249	152	178	10.8365
GAAGCUGGUUAUAAAAAACCAGCAAU	chrX:70516315-70516551(+)$1	236	162	188	13.4622

#DB
(((((((.((......)).))))).)	chr12:123062136-123062421(+)$1	1	164	190	12.5249
(((((.((((......))))))))))	chr6:131998929-131999179(+)$1	1	42	68	12.8535
.((((((.((......)).)))))))	chr4:25395831-25396099(+)$1	1	140	166	12.6413
.(((((((((......))))))))).	chrX:2873349-2873673(-)$1	1	235	261	12.2742
((((((((((......))))))))))	chr2:109068744-109069013(+)$1	1	94	120	14.4421
(((((((.((......)).)))))..	chr5:1088996-1089251(-)$1	1	16	42	12.6229
...(((((.(......))))))...)	chr22:50683841-50684059(-)$1	1	139	165	13.1067
((.(((((((......))))))).))	chr3:171969181-171969438(+)$1	1	27	53	13.2407
((((((((((......))..))))))	chr4:24541693-24541984(-)$1	1	233	259	14.0883
((((((((((......))))))).))	chr2:198288431-198288708(-)$1	1	207	233	13.2200
...(((((((......))))))))))	chr6:1726527-1726811(-)$1	1	247	273	12.5945
((((.(((((......)))))...))	chr10:105526741-105527026(-)$1	1	98	124	12.2383
((..(((.(((.....))).))))))	chr20:25470410-25470617(-)$1	1	131	157	8.4482
((((((((((......)))))..)))	chr17:80895823-80896038(+)$1	1	6	32	11.5092
((((((((.(......)...))))))	chr1:43124431-43124681(+)$1	1	123	149	11.5328
((..((((.(......).).))).))	chr1:205495116-205495408(+)$1	1	28	54	12.8560
((((((((((......)))).)))).	chr9:133507235-133507513(+)$1	1	39	65	10.5903
..(((((.((......)))))))..)	chr17:80007690-80007929(-)$1	1	47	73	12.9041
((((...(((......))).))))))	chr14:71063221-71063487(-)$1	1	57	83	12.3684
((.((.((((......)))).)).))	chr16:67997266-67997479(-)$1	1	127	153	10.9348
(((((((.((......))..))))))	chr19:10490958-10491185(-)$1	1	38	64	13.9925
(((((((.........))))))))))	chr7:40221488-40221728(+)$1	1	28	54	9.1383
...(((((((.....)))))))....	chr16:84766980-84767213(+)$1	1	108	134	8.8277
((((...(((......))).))))))	chr20:39802830-39803051(+)$1	1	38	64	11.9138
((((..((((......))))))))))	chr3:58094820-58095041(+)$1	1	167	193	12.8484
((((((.(((......))).))))))	chr3:184105649-184105906(+)$1	1	13	39	12.2303
(.((....((......))...))..)	chr19:39966655-39966888(+)$1	1	145	171	12.2819
(((((((.((......)))))..)))	chr10:79613012-79613261(-)$1	1	105	131	12.6560
...((.(.((......)))))...))	chr19:47880302-47880560(+)$1	1	195	221	12.8815
(((((((.((......)).)))).))	chr2:75107308-75107563(+)$1	1	6	32	12.1980
.(((((((((......))))))))))	chr19:18650259-18650525(-)$1	1	140	166	12.7770
((..((((((......))))))..))	chr17:3480906-3481148(-)$1	1	17	43	11.8393
((((((((((......))))))..))	chr9:117050634-117050839(+)$1	1	63	89	11.5178
..(((.((((......).))).)))(	chr4:3131649-3131867(+)$1	1	28	54	10.1395
((((((..((......)).))).)))	chr17:79567313-79567552(-)$1	1	178	204	13.4781
(((((((((.........))))))))	chr13:96295761-96296037(-)$1	1	104	130	9.0742
((((((((((.....))).)))))))	chr11:9165650-9165919(-)$1	1	33	59	9.5806
.((((...((......))...)))))	chr14:24740020-24740240(-)$1	1	78	104	12.3027
((((.(((((......)))))...))	chr17:78195413-78195699(+)$1	1	11	37	12.2383
((((..((((......))))...)))	chr14:24113965-24114176(+)$1	1	59	85	12.5828
(....(((((......)))))...))	chr9:136531756-136532000(-)$1	1	109	135	12.5178
((.(((((((......))))))).))	chr20:62577069-62577292(-)$1	1	140	166	13.2407
.(((((((((......)))).)))..	chr2:42282042-42282252(+)$1	1	79	105	11.4517
((((((..((......))..))))))	chr16:68591826-68592084(+)$1	1	5	31	12.3822
(.((((((((......))))))))..	chr19:19767809-19768058(-)$1	1	152	178	10.8365
((.(((((((......)))))))..)	chrX:70516315-70516551(+)$1	1	162	188	13.4622

#PSSM
d : 0.13	f : 0.13	e : 0.13	b : 0.08	g : 0.08	[ : 0.06	: : 0.06	i : 0.06	= : 0.04	c : 0.04	h : 0.04	# : 0.04	" : 0.02	$ : 0.02	! : 0.02	
f : 0.15	d : 0.15	b : 0.10	i : 0.10	g : 0.06	c : 0.06	e : 0.06	# : 0.06	= : 0.04	h : 0.04	[ : 0.04	" : 0.02	$ : 0.02	! : 0.02	: : 0.02	
e : 0.13	f : 0.10	i : 0.10	d : 0.10	[ : 0.08	g : 0.06	! : 0.06	h : 0.06	# : 0.06	c : 0.06	= : 0.04	b : 0.04	" : 0.02	$ : 0.02	
g : 0.19	e : 0.15	i : 0.10	d : 0.10	f : 0.08	c : 0.08	! : 0.06	h : 0.06	b : 0.06	= : 0.04	# : 0.02	
g : 0.17	c : 0.13	e : 0.10	f : 0.10	i : 0.10	d : 0.06	= : 0.04	[ : 0.04	h : 0.04	" : 0.04	b : 0.04	! : 0.04	# : 0.04	
e : 0.17	g : 0.15	f : 0.10	i : 0.10	c : 0.10	[ : 0.08	" : 0.06	= : 0.04	h : 0.04	d : 0.04	! : 0.04	# : 0.02	
e : 0.17	d : 0.15	g : 0.15	i : 0.10	c : 0.08	f : 0.06	" : 0.06	= : 0.04	h : 0.04	! : 0.04	[ : 0.02	# : 0.02	a : 0.02	
[ : 0.19	d : 0.13	g : 0.13	e : 0.10	c : 0.10	i : 0.08	h : 0.04	f : 0.04	! : 0.04	= : 0.02	a : 0.02	r : 0.02	# : 0.02	" : 0.02	
b : 0.28	d : 0.13	g : 0.13	c : 0.13	e : 0.08	i : 0.06	[ : 0.06	f : 0.04	= : 0.02	r : 0.02	h : 0.02	
b : 0.28	d : 0.13	g : 0.13	c : 0.10	a : 0.08	e : 0.08	i : 0.04	r : 0.04	f : 0.04	= : 0.02	h : 0.02	
o : 0.89	r : 0.04	n : 0.04	c : 0.02	
o : 0.89	n : 0.06	r : 0.04	
o : 0.89	n : 0.06	r : 0.04	
o : 0.89	n : 0.06	r : 0.04	
o : 0.89	n : 0.06	r : 0.04	
o : 0.89	r : 0.04	n : 0.02	g : 0.02	c : 0.02	
b : 0.28	d : 0.13	g : 0.13	c : 0.10	a : 0.08	e : 0.08	i : 0.04	= : 0.04	f : 0.04	r : 0.02	h : 0.02	
b : 0.28	d : 0.13	g : 0.13	e : 0.10	c : 0.10	i : 0.04	= : 0.04	] : 0.04	f : 0.04	3 : 0.02	r : 0.02	h : 0.02	
] : 0.13	d : 0.13	e : 0.13	g : 0.13	c : 0.13	i : 0.06	2 : 0.06	3 : 0.06	= : 0.04	a : 0.04	f : 0.04	h : 0.02	
e : 0.17	d : 0.15	g : 0.13	] : 0.10	i : 0.08	f : 0.06	2 : 0.06	3 : 0.06	c : 0.06	= : 0.04	b : 0.02	h : 0.02	
g : 0.19	e : 0.17	f : 0.13	i : 0.10	c : 0.10	h : 0.06	] : 0.06	3 : 0.06	= : 0.04	b : 0.02	d : 0.02	
g : 0.19	f : 0.13	i : 0.10	3 : 0.10	e : 0.08	c : 0.08	h : 0.06	d : 0.06	= : 0.04	2 : 0.04	b : 0.04	] : 0.02	
g : 0.17	3 : 0.13	i : 0.10	f : 0.08	c : 0.08	2 : 0.08	e : 0.06	h : 0.06	d : 0.06	= : 0.04	b : 0.04	4 : 0.02	] : 0.02	
] : 0.13	f : 0.10	i : 0.10	3 : 0.10	2 : 0.10	e : 0.08	h : 0.08	c : 0.08	g : 0.06	= : 0.04	d : 0.04	4 : 0.02	
f : 0.15	2 : 0.13	d : 0.13	i : 0.10	e : 0.08	c : 0.08	g : 0.06	b : 0.06	h : 0.06	= : 0.04	] : 0.02	3 : 0.02	4 : 0.02	
d : 0.15	f : 0.13	b : 0.10	e : 0.10	c : 0.08	g : 0.06	2 : 0.06	i : 0.06	h : 0.06	= : 0.04	: : 0.02	] : 0.02	4 : 0.02	F : 0.02	E : 0.02	

#score	555.3832470054584
#seq	46
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_CDS_m1_run1.txt

#BEAR
$$$bb[avvvvvvvvvvvvva]bb55	chr2:21225744-21225965(-)$1	221	161	187	20.5198
ccc[ddddtttttttttttdddd]cc	chr2:61298664-61299024(+)$1	360	184	210	22.1451
!!eeeeewwwwwwwwwwwwwweeeee	chr20:39726797-39727047(+)$1	250	82	108	22.7988
:ffffffyyyyyyyyyyyyyyyyfff	chr13:49719813-49720042(+)$1	229	82	108	19.6047
gggggwwwwwwwwwwwwwwggggggg	chr1:19523534-19523769(-)$1	235	189	215	21.7472
!!ddddvvvvvvvvvvvvvdddd22c	chr13:103280124-103280373(+)$1	249	52	78	22.4561
b!!eeeeettttttttttteeeee22	chr1:39760617-39760872(+)$1	255	45	71	22.8432
ii[cccattttttttttta]ccc]ii	chrX:123195565-123195823(+)$1	258	7	33	23.3774
(ffffffuuuuuuuuuuuuffffff2	chr2:110323280-110323492(-)$1	212	171	197	23.1420
hhhhhhhuuuuuuuuuuuuhhhhhhh	chrX:64737818-64738094(-)$1	276	171	197	21.3834
dddd[bbvvvvvvvvvvvvvbb]ddd	chr9:33338453-33338655(+)$1	202	72	98	21.9526
!!fffffftttttttttttffffff]	chr1:67437237-67437474(+)$1	237	79	105	23.0887
==eeeeeuuuuuuuuuuuueeeee33	chr12:121858340-121858624(+)$1	284	225	251	24.4137
:gggggggtttttttttttggggggg	chr5:138700287-138700533(+)$1	246	145	171	22.1168
ccc[ddddtttttttttttdddd]cc	chr2:180835292-180835558(-)$1	266	73	99	22.1451
$ffffffuuuuuuuuuuuuffffff4	chr3:81630302-81630521(-)$1	219	128	154	23.7308
''''cccuuuuuuuuuuuuccc8888	chr17:35603691-35603967(-)$1	276	97	123	19.7942
eee!!bbvvvvvvvvvvvvvbb333e	chrX:79932550-79932825(-)$1	275	194	220	22.8214
!ffffffuuuuuuuuuuuuffffff3	chr14:94700867-94701105(+)$1	238	141	167	24.0227
::eeeeeuuuuuuuuuuuueeeee::	chr1:202385841-202386159(+)$1	318	133	159	20.4606
iiii[bbuuuuuuuuuuuubb]iiii	chr7:111644001-111644252(-)$1	251	165	191	23.4412
GGeeeeettttttttttteeeee:cc	chr2:21256154-21256365(-)$1	211	79	105	20.8622
cc!!cccuuuuuuuuuuuuccc22cc	chr14:92472321-92472596(-)$1	275	82	108	23.4668
:ffffffwwwwwwwwwwwwwwfffff	chr5:43294691-43294943(-)$1	252	151	177	21.4658
g:eeeeevvvvvvvvvvvvveeeeed	chr1:23398517-23398793(+)$1	276	110	136	22.8239
###eeeeettttttttttteeeee55	chr9:72893305-72893568(+)$1	263	37	63	21.7110
""fffffftttttttttttffffff4	chr12:123058736-123059020(+)$1	284	111	137	22.8744
$$$eeeeettttttttttteeeee66	chr15:77471115-77471402(-)$1	287	29	55	21.8448
!ffffffuuuuuuuuuuuuffffff3	chr6:34962037-34962291(+)$1	254	199	225	24.0227
ddddcccvvvvvvvvvvvvvccc]dd	chr12:463225-463499(-)$1	274	236	262	22.8221
++eeeeettttttttttteeeee22d	chr16:249100-249340(-)$1	240	181	207	21.4484
ggggggguuuuuuuuuuuuggggggg	chr2:166756194-166756455(-)$1	261	222	248	24.0725
hhhhhhhwwwwwwwwwwwwwwhhhhh	chr13:49710480-49710739(+)$1	259	174	200	20.3227
::eeeeeuuuuuuuuuuuueeeeehh	chr1:51121016-51121265(-)$1	249	96	122	22.1416
ccc[ddddtttttttttttdddd]cc	chr2:63086206-63086416(+)$1	210	137	163	22.1451
iiii!!attttttttttta22iiiii	chr8:95871637-95871860(+)$1	223	106	132	22.7639
#ffffffwwwwwwwwwwwwwwfffff	chr13:40254019-40254283(+)$1	264	131	157	22.3062
=======uuuuuuuuuuuu=======	chr9:116967975-116968191(+)$1	216	145	171	24.1263
[a[a[bbtttttttttttbb]aa]==	chr6:146276234-146276571(-)$1	337	149	175	22.2159
gggggggvvvvvvvvvvvvvgggggg	chr2:17898323-17898544(-)$1	221	155	181	23.9791
=======wwwwwwwwwwwwww=====	chr18:259079-259309(-)$1	230	45	71	22.5298
Fffffffvvvvvvvvvvvvvffffff	chr2:86374792-86375036(-)$1	244	19	45	23.1655
:ffffffvvvvvvvvvvvvvffffff	chr1:10342434-10342674(+)$1	240	27	53	22.8505
:ffffffwwwwwwwwwwwwwwfffff	chr6:57012390-57012669(+)$1	279	55	81	21.4658
e[bb[bbtttttttttttbbbb]eee	chr9:79895041-79895255(+)$1	214	93	119	21.0871
[a[ddddtttttttttttdddd]a]e	chr2:27825235-27825528(+)$1	293	84	110	22.1152
[ddddyyyyyyyyyyyyyyyydddd]	chr1:10195054-10195343(+)$1	289	89	115	19.8782
!!eeeeettttttttttteeeeeeee	chr4:113568265-113568609(+)$1	344	235	261	23.0874
a[eeeeewwwwwwwwwwwwwweeeee	chr21:38560764-38560996(+)$1	232	36	62	22.6393
eeee[ccctttttttttttccc4444	chr19:57327598-57327854(-)$1	256	58	84	22.7754
hhhh[bbuuuuuuuuuuuubb]hhhh	chr17:65734953-65735208(+)$1	255	30	56	21.9439
fff[cccwwwwwwwwwwwwwwccc]f	chr6:108218751-108219007(-)$1	256	204	230	22.1215
ffffyyyyyyyyyyyyyyyyffffff	chr16:53698713-53699022(-)$1	309	240	266	20.1175
hhhhhhhuuuuuuuuuuuuhhhhhhh	chr3:139092052-139092307(-)$1	255	27	53	21.3834
hhhhhhhvvvvvvvvvvvvvhhhhhh	chr14:75283639-75283860(+)$1	221	166	192	21.5182
f[ddddattttttttttta]dddd]f	chr7:91866879-91867103(-)$1	224	6	32	22.3589
e[eeeeeuuuuuuuuuuuueeeee]e	chr17:73664493-73664812(+)$1	319	250	276	24.2711
:ffffffvvvvvvvvvvvvvffffff	chr14:31416220-31416484(-)$1	264	205	231	22.8505
dd[eeeeettttttttttteeeee]d	chr1:171519260-171519479(+)$1	219	16	42	22.7843
eeee[bbuuuuuuuuuuuubbeeeee	chr3:58094818-58095051(+)$1	233	64	90	23.1467
ee[eeeeettttttttttteeeee]e	chr2:100020807-100021017(-)$1	210	122	148	23.0260
g[ddddvvvvvvvvvvvvvdddd]gg	chr14:59821863-59822119(+)$1	256	88	114	22.7368
fbb[cccuuuuuuuuuuuuccc]bb]	chr3:185414299-185414531(-)$1	232	66	92	22.7492

#otherMatches

#Seq PSSM
UUCCAGGGACUCAAGGAUAACGUGUU	chr2:21225744-21225965(-)$1	221	161	187	20.5198
UAUAUCAAAUCCUCACUUCUUGACAU	chr2:61298664-61299024(+)$1	360	184	210	22.1451
UUAUCACCAACCUAAGCAAAUGUGAU	chr20:39726797-39727047(+)$1	250	82	108	22.7988
AAUGUUGUAUUUUUACAGGCCUCCGA	chr13:49719813-49720042(+)$1	229	82	108	19.6047
CAGGAAACCAUGAAAAUCCUCCUGAA	chr1:19523534-19523769(-)$1	235	189	215	21.7472
GAGUCUUAAUCUCUUUAAUAGAUGAU	chr13:103280124-103280373(+)$1	249	52	78	22.4561
AUCCGCUCCCCACUGCCAAGAGUGCU	chr1:39760617-39760872(+)$1	255	45	71	22.8432
AAUAAGCUAACUCUUUCUGACuuuuu	chrX:123195565-123195823(+)$1	258	7	33	23.3774
GACUAGAAAUAUGUAUCUAUCUAGUA	chr2:110323280-110323492(-)$1	212	171	197	23.1420
GGCUUCUGGCCCAGAAAAGAGGAGCU	chrX:64737818-64738094(-)$1	276	171	197	21.3834
ACAAGCGGUGUAACAAGAAACGGUUG	chr9:33338453-33338655(+)$1	202	72	98	21.9526
UCAAGCCUUUUAUUUUUCUAGGCUUU	chr1:67437237-67437474(+)$1	237	79	105	23.0887
GAAAACCAAAAGUCCUGUAGGUUUAU	chr12:121858340-121858624(+)$1	284	225	251	24.4137
GUAAAAAGUUAUUUUUCAUCUUUUUA	chr5:138700287-138700533(+)$1	246	145	171	22.1168
UUCAAGGACCACCCCAUUAUCCUAGA	chr2:180835292-180835558(-)$1	266	73	99	22.1451
AUGGGCGAUAUAGUAUACACGCUCAC	chr3:81630302-81630521(-)$1	219	128	154	23.7308
AAAACCUGUGUGUUUGAGAAGGAAAA	chr17:35603691-35603967(-)$1	276	97	123	19.7942
CCAGAACAGAUCAAGAUUACGUAGAU	chrX:79932550-79932825(-)$1	275	194	220	22.8214
AGGUAUACUUUGAAUUCCUUAUGCCA	chr14:94700867-94701105(+)$1	238	141	167	24.0227
AACCAGCAAGACAACGAGGGCUGGAC	chr1:202385841-202386159(+)$1	318	133	159	20.4606
AACAACCUCCUCAACAUACGGCUGUU	chr7:111644001-111644252(-)$1	251	165	191	23.4412
AUCUCUGAGCAAAAUAUCCAGAGAGC	chr2:21256154-21256365(-)$1	211	79	105	20.8622
CCAGAAGGAGAAUUUAGAACUUAAGG	chr14:92472321-92472596(-)$1	275	82	108	23.4668
GUAAGUAUAAAUUUCACCUACUACUU	chr5:43294691-43294943(-)$1	252	151	177	21.4658
AUUAGCUGAAACACAAGGAAAGCUAG	chr1:23398517-23398793(+)$1	276	110	136	22.8239
AAAUACAUUUUGAAGAUAUAUGUAAA	chr9:72893305-72893568(+)$1	263	37	63	21.7110
GCUCAAAGUCCACAUCACUCUUUGAA	chr12:123058736-123059020(+)$1	284	111	137	22.8744
CCUCCAGUUCAGCGCCAUCACUGGUU	chr15:77471115-77471402(-)$1	287	29	55	21.8448
AGGGAUUUUUAAAGUUUGUGAUCCUG	chr6:34962037-34962291(+)$1	254	199	225	24.0227
GUGUCCUAAAUGUGUCGCCGAGGUAC	chr12:463225-463499(-)$1	274	236	262	22.8221
CUUGGUCUCCAUGACAAUGACCGUCG	chr16:249100-249340(-)$1	240	181	207	21.4484
AGUUUUAAAUUUUACCCCAUGGAACU	chr2:166756194-166756455(-)$1	261	222	248	24.0725
UGCUGGUGGUAUAAACACAGGAUCAG	chr13:49710480-49710739(+)$1	259	174	200	20.3227
UCCCCGUUCGCCACCAAUUAUGGGAG	chr1:51121016-51121265(-)$1	249	96	122	22.1416
GGACUUGGCCACCGUGAAUUCAAAUC	chr2:63086206-63086416(+)$1	210	137	163	22.1451
CCUCUUCGUCAAGUUAUAGCUGAGGA	chr8:95871637-95871860(+)$1	223	106	132	22.7639
GGCUUAUGAAAGACUUUACCGAUGGG	chr13:40254019-40254283(+)$1	264	131	157	22.3062
UGGCCAUGGUGAUGUGAAGAUGGCCA	chr9:116967975-116968191(+)$1	216	145	171	24.1263
GUAGAUGAGGAAAAGAGGCAGCAGCU	chr6:146276234-146276571(-)$1	337	149	175	22.2159
CAGCUUUGUAAACGAAUUGAAGAGCU	chr2:17898323-17898544(-)$1	221	155	181	23.9791
AGAUUGUCUAAAUCCCAGAAUACAGU	chr18:259079-259309(-)$1	230	45	71	22.5298
GUUUUCCUAAAAGUAUAUGUGGAGAA	chr2:86374792-86375036(-)$1	244	19	45	23.1655
CAUGGGGUCCCUCACUUCAUCCCCAU	chr1:10342434-10342674(+)$1	240	27	53	22.8505
CGGAGGGGCACAUUUAAAUAACUUUC	chr6:57012390-57012669(+)$1	279	55	81	21.4658
UAACGCUGGAAUAUGUAAAGGUAAGC	chr9:79895041-79895255(+)$1	214	93	119	21.0871
UGAUUUCUAGCCCAUUUUGAAAGCCG	chr2:27825235-27825528(+)$1	293	84	110	22.1152
CACGUAUAUUUUUCACCCAAGAUGUC	chr1:10195054-10195343(+)$1	289	89	115	19.8782
UCCACUGAACCCCAAAAGCAGUGCUC	chr4:113568265-113568609(+)$1	344	235	261	23.0874
CGUACUUGAAAACUGGAAGGAGAGUG	chr21:38560764-38560996(+)$1	232	36	62	22.6393
CUUAAAAGGCGUCAGAAAACUUACAA	chr19:57327598-57327854(-)$1	256	58	84	22.7754
GUUACUCAUAAGUUCAAUAGAAUAGC	chr17:65734953-65735208(+)$1	255	30	56	21.9439
UUUUAUAUUUAUUUCCCUCAUUGUCA	chr6:108218751-108219007(-)$1	256	204	230	22.1215
GGUACAUUUGAAAUAACCACUGCCUU	chr16:53698713-53699022(-)$1	309	240	266	20.1175
CUGAGAGCUAUUUUUCUUUCUUUCAG	chr3:139092052-139092307(-)$1	255	27	53	21.3834
UUGAGGUAGAAGCUUAAAGAACUUUA	chr14:75283639-75283860(+)$1	221	166	192	21.5182
UGCUAACUUUUUAAAAAUGAUUAGGA	chr7:91866879-91867103(-)$1	224	6	32	22.3589
AAUUUCAUUUGUCAGAUUUUGGAACU	chr17:73664493-73664812(+)$1	319	250	276	24.2711
ACAUAGUUUAUAUAAUGGAUAUUAUG	chr14:31416220-31416484(-)$1	264	205	231	22.8505
GUCAAAUUUGAAUGAUGAUGGUUUUA	chr1:171519260-171519479(+)$1	219	16	42	22.7843
UCCUAGCUCUGGCUUUUUUGCAGGAU	chr3:58094818-58095051(+)$1	233	64	90	23.1467
AUGGGAACCCUCUGCUGUAGUUUCAA	chr2:100020807-100021017(-)$1	210	122	148	23.0260
CAUUUGGAAAUUAUAUGAAUAAAGGU	chr14:59821863-59822119(+)$1	256	88	114	22.7368
GCUUUCUCUUUUAGGUGUUGGAUGGA	chr3:185414299-185414531(-)$1	232	66	92	22.7492

#DB
...((.(.............).))..	chr2:21225744-21225965(-)$1	1	161	187	20.5198
(((.((((...........)))).))	chr2:61298664-61299024(+)$1	1	184	210	22.1451
..(((((..............)))))	chr20:39726797-39727047(+)$1	1	82	108	22.7988
.((((((................)))	chr13:49719813-49720042(+)$1	1	82	108	19.6047
(((((..............)))))))	chr1:19523534-19523769(-)$1	1	189	215	21.7472
..((((.............))))..)	chr13:103280124-103280373(+)$1	1	52	78	22.4561
(..(((((...........)))))..	chr1:39760617-39760872(+)$1	1	45	71	22.8432
((.((((...........).))).))	chrX:123195565-123195823(+)$1	1	7	33	23.3774
.((((((............)))))).	chr2:110323280-110323492(-)$1	1	171	197	23.1420
(((((((............)))))))	chrX:64737818-64738094(-)$1	1	171	197	21.3834
((((.((.............)).)))	chr9:33338453-33338655(+)$1	1	72	98	21.9526
..((((((...........)))))).	chr1:67437237-67437474(+)$1	1	79	105	23.0887
(((((((............)))))..	chr12:121858340-121858624(+)$1	1	225	251	24.4137
.(((((((...........)))))))	chr5:138700287-138700533(+)$1	1	145	171	22.1168
(((.((((...........)))).))	chr2:180835292-180835558(-)$1	1	73	99	22.1451
.((((((............)))))).	chr3:81630302-81630521(-)$1	1	128	154	23.7308
....(((............)))....	chr17:35603691-35603967(-)$1	1	97	123	19.7942
(((..((.............))...)	chrX:79932550-79932825(-)$1	1	194	220	22.8214
.((((((............)))))).	chr14:94700867-94701105(+)$1	1	141	167	24.0227
..(((((............)))))..	chr1:202385841-202386159(+)$1	1	133	159	20.4606
((((.((............)).))))	chr7:111644001-111644252(-)$1	1	165	191	23.4412
(((((((...........))))).((	chr2:21256154-21256365(-)$1	1	79	105	20.8622
((..(((............)))..))	chr14:92472321-92472596(-)$1	1	82	108	23.4668
.((((((..............)))))	chr5:43294691-43294943(-)$1	1	151	177	21.4658
).(((((.............)))))(	chr1:23398517-23398793(+)$1	1	110	136	22.8239
...(((((...........)))))..	chr9:72893305-72893568(+)$1	1	37	63	21.7110
..((((((...........)))))).	chr12:123058736-123059020(+)$1	1	111	137	22.8744
...(((((...........)))))..	chr15:77471115-77471402(-)$1	1	29	55	21.8448
.((((((............)))))).	chr6:34962037-34962291(+)$1	1	199	225	24.0227
(((((((.............))).))	chr12:463225-463499(-)$1	1	236	262	22.8221
..(((((...........)))))..)	chr16:249100-249340(-)$1	1	181	207	21.4484
(((((((............)))))))	chr2:166756194-166756455(-)$1	1	222	248	24.0725
(((((((..............)))))	chr13:49710480-49710739(+)$1	1	174	200	20.3227
..(((((............)))))((	chr1:51121016-51121265(-)$1	1	96	122	22.1416
(((.((((...........)))).))	chr2:63086206-63086416(+)$1	1	137	163	22.1451
((((..(...........)..)))))	chr8:95871637-95871860(+)$1	1	106	132	22.7639
.((((((..............)))))	chr13:40254019-40254283(+)$1	1	131	157	22.3062
(((((((............)))))))	chr9:116967975-116968191(+)$1	1	145	171	24.1263
.(.(.((...........)).)).))	chr6:146276234-146276571(-)$1	1	149	175	22.2159
(((((((.............))))))	chr2:17898323-17898544(-)$1	1	155	181	23.9791
(((((((..............)))))	chr18:259079-259309(-)$1	1	45	71	22.5298
(((((((.............))))))	chr2:86374792-86375036(-)$1	1	19	45	23.1655
.((((((.............))))))	chr1:10342434-10342674(+)$1	1	27	53	22.8505
.((((((..............)))))	chr6:57012390-57012669(+)$1	1	55	81	21.4658
(.((.((...........)))).)))	chr9:79895041-79895255(+)$1	1	93	119	21.0871
.(.((((...........)))).).)	chr2:27825235-27825528(+)$1	1	84	110	22.1152
.((((................)))).	chr1:10195054-10195343(+)$1	1	89	115	19.8782
..(((((...........))))))))	chr4:113568265-113568609(+)$1	1	235	261	23.0874
(.(((((..............)))))	chr21:38560764-38560996(+)$1	1	36	62	22.6393
((((.(((...........)))....	chr19:57327598-57327854(-)$1	1	58	84	22.7754
((((.((............)).))))	chr17:65734953-65735208(+)$1	1	30	56	21.9439
(((.(((..............))).)	chr6:108218751-108219007(-)$1	1	204	230	22.1215
((((................))))))	chr16:53698713-53699022(-)$1	1	240	266	20.1175
(((((((............)))))))	chr3:139092052-139092307(-)$1	1	27	53	21.3834
(((((((.............))))))	chr14:75283639-75283860(+)$1	1	166	192	21.5182
(.(((((...........).)))).)	chr7:91866879-91867103(-)$1	1	6	32	22.3589
(.(((((............))))).)	chr17:73664493-73664812(+)$1	1	250	276	24.2711
.((((((.............))))))	chr14:31416220-31416484(-)$1	1	205	231	22.8505
((.(((((...........))))).)	chr1:171519260-171519479(+)$1	1	16	42	22.7843
((((.((............)))))))	chr3:58094818-58095051(+)$1	1	64	90	23.1467
((.(((((...........))))).)	chr2:100020807-100021017(-)$1	1	122	148	23.0260
(.((((.............)))).))	chr14:59821863-59822119(+)$1	1	88	114	22.7368
(((.(((............))).)).	chr3:185414299-185414531(-)$1	1	66	92	22.7492

#PSSM
: : 0.12	! : 0.09	e : 0.09	g : 0.07	h : 0.07	c : 0.06	f : 0.06	$ : 0.04	i : 0.04	d : 0.04	= : 0.04	[ : 0.04	# : 0.03	b : 0.01	( : 0.01	' : 0.01	G : 0.01	" : 0.01	+ : 0.01	F : 0.01	a : 0.01	
f : 0.20	! : 0.07	h : 0.07	[ : 0.07	c : 0.06	g : 0.06	d : 0.06	e : 0.06	i : 0.04	= : 0.04	: : 0.04	$ : 0.03	a : 0.03	' : 0.01	G : 0.01	# : 0.01	" : 0.01	+ : 0.01	b : 0.01	
f : 0.23	e : 0.20	d : 0.09	[ : 0.07	h : 0.07	g : 0.06	c : 0.04	$ : 0.03	! : 0.03	i : 0.03	= : 0.03	b : 0.03	' : 0.01	# : 0.01	
e : 0.26	f : 0.22	d : 0.11	[ : 0.07	h : 0.07	g : 0.06	b : 0.03	! : 0.03	i : 0.03	= : 0.03	c : 0.01	' : 0.01	a : 0.01	
e : 0.23	f : 0.20	d : 0.12	[ : 0.11	c : 0.09	g : 0.06	h : 0.06	! : 0.03	= : 0.03	b : 0.01	y : 0.01	
e : 0.23	f : 0.20	d : 0.11	c : 0.11	b : 0.11	h : 0.06	g : 0.04	= : 0.03	y : 0.03	[ : 0.01	w : 0.01	! : 0.01	
e : 0.23	f : 0.20	b : 0.11	c : 0.09	a : 0.06	d : 0.06	h : 0.06	g : 0.04	v : 0.03	= : 0.03	y : 0.03	w : 0.01	
u : 0.28	v : 0.19	w : 0.14	t : 0.14	e : 0.07	d : 0.04	y : 0.04	f : 0.03	g : 0.01	c : 0.01	
t : 0.33	u : 0.28	v : 0.19	w : 0.14	y : 0.04	
t : 0.33	u : 0.28	v : 0.19	w : 0.14	y : 0.04	
t : 0.33	u : 0.28	v : 0.19	w : 0.14	y : 0.04	
t : 0.33	u : 0.28	v : 0.19	w : 0.14	y : 0.04	
t : 0.33	u : 0.28	v : 0.19	w : 0.14	y : 0.04	
t : 0.33	u : 0.28	v : 0.19	w : 0.14	y : 0.04	
t : 0.33	u : 0.28	v : 0.19	w : 0.14	y : 0.04	
t : 0.33	u : 0.28	v : 0.19	w : 0.14	y : 0.04	
t : 0.33	u : 0.28	v : 0.19	w : 0.14	y : 0.04	
t : 0.33	u : 0.28	v : 0.19	w : 0.14	y : 0.04	
u : 0.28	v : 0.19	t : 0.19	w : 0.14	y : 0.04	a : 0.04	e : 0.04	b : 0.03	d : 0.01	
e : 0.19	v : 0.15	w : 0.12	d : 0.09	f : 0.09	b : 0.07	c : 0.06	y : 0.04	g : 0.04	] : 0.03	h : 0.03	2 : 0.01	= : 0.01	
e : 0.20	f : 0.15	w : 0.12	d : 0.11	c : 0.09	b : 0.09	g : 0.06	h : 0.04	y : 0.03	a : 0.01	2 : 0.01	= : 0.01	] : 0.01	
e : 0.25	f : 0.20	d : 0.12	c : 0.11	g : 0.06	h : 0.06	] : 0.04	b : 0.04	= : 0.03	y : 0.01	i : 0.01	a : 0.01	
e : 0.25	f : 0.20	d : 0.11	h : 0.07	g : 0.06	] : 0.06	c : 0.04	i : 0.03	= : 0.03	b : 0.01	y : 0.01	8 : 0.01	3 : 0.01	2 : 0.01	a : 0.01	4 : 0.01	
e : 0.23	f : 0.22	] : 0.11	h : 0.07	g : 0.06	2 : 0.04	d : 0.04	b : 0.03	i : 0.03	= : 0.03	8 : 0.01	3 : 0.01	: : 0.01	a : 0.01	4 : 0.01	c : 0.01	
f : 0.22	e : 0.09	h : 0.09	] : 0.09	c : 0.07	g : 0.07	2 : 0.04	i : 0.04	d : 0.04	= : 0.04	5 : 0.03	3 : 0.03	8 : 0.01	: : 0.01	6 : 0.01	4 : 0.01	b : 0.01	
f : 0.15	e : 0.14	c : 0.09	h : 0.09	g : 0.07	d : 0.07	i : 0.04	] : 0.04	3 : 0.04	4 : 0.04	= : 0.04	5 : 0.03	2 : 0.03	8 : 0.01	: : 0.01	6 : 0.01	

#score	1408.026213467347
#seq	63
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_CDS_m3_run1.txt

#BEAR
:ccc[ddddooooooddddccc	chr3:38207235-38207502(+)$1	267	93	115	8.9056
cc"""ddddmmmmdddd333cc	chr9:79932422-79932679(+)$1	257	14	36	14.0644
Cccc[ddddmmmmddddccc::	chr3:99568471-99568726(-)$1	255	137	159	9.5517
####eeeeemmmmeeeee333e	chrM:14158-14379(-)$1	221	102	124	9.5086
cc[a[ddddmmmmdddd]a]cc	chr4:129208540-129208807(-)$1	267	57	79	13.3783
b####ddddmmmmdddd4444b	chrX:47062471-47062714(+)$1	243	207	229	13.1555
cc!!a[ddddllldddd]a22c	chr6:33179568-33179819(+)$1	251	69	91	11.3625
eeee[ddddmmmmdddd]eeee	chr8:145107127-145107377(-)$1	250	92	114	11.9249
fffffddddmmmmdddd22fff	chr10:19571921-19572198(+)$1	277	208	230	11.0563
ffffffddddllldddd4444f	chr1:245020891-245021111(-)$1	220	48	70	10.2810
ccc[eeeeemmmmeeeeeccc]	chr1:19436787-19437001(-)$1	214	126	148	8.4243
ee"""ddddnnnnndddd333e	chr21:47931363-47931628(+)$1	265	204	226	10.5902
####eeeeemmmmeeeee333e	chrM:14179-14384(-)$1	205	107	129	9.5086
"""ddddoooooodddd333dd	chr2:135911257-135911536(+)$1	279	192	214	10.7547
gg####cccmmmmccc22gggg	chr5:1085421-1085680(-)$1	259	118	140	8.0128
[cccddddnnnnndddd]ccc]	chr9:711127-711390(+)$1	263	93	115	9.8859
dddd[ddddmmmmdddd]dddd	chr5:14330887-14331110(+)$1	223	50	72	12.2842
eeee[ddddmmmmdddd]eeee	chr15:28501269-28501540(-)$1	271	4	26	11.9249
!a!!ddddnnnnndddd]a22c	chr9:117044498-117044709(+)$1	211	181	203	10.3460
fffffddddmmmmdddd]ffff	chr2:63086281-63086524(+)$1	243	179	201	11.0562
ccccccddddllldddd]ccc3	chr16:31195433-31195674(+)$1	241	128	150	10.8509
dd"""ddddmmmmdddddddda	chr1:19484299-19484560(-)$1	261	155	177	12.2352
ffff[ddddmmmmdddd333ff	chr8:100147142-100147464(+)$1	322	23	45	12.6731
dddd[ddddmmmmdddd88888	chr10:21823549-21823831(+)$1	282	223	245	10.7096
cccbbddddmmmmdddd]bb]c	chr12:53849568-53849780(+)$1	212	98	120	11.2146
cccc[ddddnnnnndddd22cc	chr5:75967525-75967797(+)$1	272	154	176	9.8935
iiiddddoooooodddd]iiii	chr1:245021930-245022165(-)$1	235	151	173	9.5427
eee!!ddddmmmmdddd22eee	chr15:28375266-28375549(-)$1	283	13	35	12.1492
dddd!!ddddllldddddddd4	chr6:144811990-144812241(+)$1	251	30	52	10.0241
cc"""ddddmmmmdddd4444c	chr10:121341870-121342115(-)$1	245	165	187	13.8634
dddd!!ddddllldddd]dddd	chr10:19884022-19884244(+)$1	222	114	136	10.6156
ddd[ddddnnnnndddd]dddd	chr14:56103091-56103354(+)$1	263	21	43	9.3778
"ccc[ddddmmmmdddd]ccc2	chr8:25220477-25220733(+)$1	256	204	226	12.7814
:ccc[ddddmmmmdddd]ccce	chr10:93695355-93695582(+)$1	227	110	132	12.0599
g####ddddmmmmdddd]gggg	chrX:70787249-70787475(+)$1	226	51	73	12.7674
dddd[ddddmmmmdddddddd]	chr1:62253321-62253606(+)$1	285	183	205	11.6552
[ccc[ddddlllddddcccddd	chr16:448084-448343(+)$1	259	25	47	10.0916
bb[a[ddddmmmmdddd]a]bb	chr7:150777514-150777882(-)$1	368	142	164	12.2501
!dddd[ddddllldddd]dddd	chr3:156876565-156876867(-)$1	302	248	270	10.1994
eeeeeddddmmmmdddd]eeee	chr19:10221639-10221943(+)$1	304	127	149	11.3772
bb"""ddddmmmmdddd333bb	chr4:79176295-79176622(+)$1	327	177	199	12.9363
####eeeeemmmmeeeee4444	chr1:39765805-39766068(+)$1	263	171	193	9.3553
!a"""ddddmmmmdddd]a22e	chr7:127334785-127335002(+)$1	217	118	140	13.4174
ffffffddddllldddd4444f	chr1:245020861-245021091(-)$1	230	28	50	10.2810
"""ddddoooooodddd333cc	chr1:19490648-19490869(-)$1	221	10	32	10.9115
dd]a:ddddmmmmddddddddm	chr14:104165101-104165367(+)$1	266	133	155	9.4273
[ccc[ddddoooooodddd]cc	chr17:79860510-79860762(-)$1	252	138	160	9.9853
dddd[ddddmmmmdddd333dd	chr1:9790572-9790796(-)$1	224	184	206	13.1090

#otherMatches

#Seq PSSM
AGCGAGUUUGAGGGAGGACCGC	chr3:38207235-38207502(+)$1	267	93	115	8.9056
ACAUACCUAUUACUAGGAAAGU	chr9:79932422-79932679(+)$1	257	14	36	14.0644
CCAUUGAGGAUGACCUCAUGAA	chr3:99568471-99568726(-)$1	255	137	159	9.5517
GGUUGAUUCGGGAGGAUCCUAU	chrM:14158-14379(-)$1	221	102	124	9.5086
CUGGGGGCCUACCGGCUGUGGG	chr4:129208540-129208807(-)$1	267	57	79	13.3783
CUUCGGCAUCUCAAUGCAACCG	chrX:47062471-47062714(+)$1	243	207	229	13.1555
CGGAGGACCUGAUGGGUGUGGC	chr6:33179568-33179819(+)$1	251	69	91	11.3625
GGCGAGGUGGGGACGCCCUGCC	chr8:145107127-145107377(-)$1	250	92	114	11.9249
GAAUAUCUCUCUUGGGAAAUAU	chr10:19571921-19572198(+)$1	277	208	230	11.0563
GGUGUCUACUGACAGUGAAAUG	chr1:245020891-245021111(-)$1	220	48	70	10.2810
UGGUGAGUUAGGGGAUUUUCAG	chr1:19436787-19437001(-)$1	214	126	148	8.4243
GUAGAAUGUCACACACAUAACA	chr21:47931363-47931628(+)$1	265	204	226	10.5902
GGUUGAUUCGGGAGGAUCCUAU	chrM:14179-14384(-)$1	205	107	129	9.5086
AUUGAGGUUUGAGUCUCUAAUA	chr2:135911257-135911536(+)$1	279	192	214	10.7547
CUUCCAGGCGGAGGCUGCAGGU	chr5:1085421-1085680(-)$1	259	118	140	8.0128
UUCAUGUCACCAAGACACUGAU	chr9:711127-711390(+)$1	263	93	115	9.8859
GGUGUGGGGAAAUCUCUUCAUC	chr5:14330887-14331110(+)$1	223	50	72	12.2842
UCAGUGUUUAAUAAGACUUUGA	chr15:28501269-28501540(-)$1	271	4	26	11.9249
CCCUGGACCCUCCGUCCUGUUG	chr9:117044498-117044709(+)$1	211	181	203	10.3460
AUAGUCAAGUUGACUUGAACUG	chr2:63086281-63086524(+)$1	243	179	201	11.0562
GGCAGCCCCAGAGUGGGAGCUA	chr16:31195433-31195674(+)$1	241	128	150	10.8509
GAUCAGUGCUCAUGUGCUCAGG	chr1:19484299-19484560(-)$1	261	155	177	12.2352
AGAGAUUCUACAAGGAAAGCCU	chr8:100147142-100147464(+)$1	322	23	45	12.6731
CCCAACGgucaccgccgccccc	chr10:21823549-21823831(+)$1	282	223	245	10.7096
AGAGUGGUGCACGUAUCAACAU	chr12:53849568-53849780(+)$1	212	98	120	11.2146
CCUGCGCCAACUCCUGGCUCCA	chr5:75967525-75967797(+)$1	272	154	176	9.8935
UUUCUAUGUAUAAAUGGCAAAG	chr1:245021930-245022165(-)$1	235	151	173	9.5427
CUGAACAGCAGAGGCUGCCCAG	chr15:28375266-28375549(-)$1	283	13	35	12.1492
UAAUCAUCCUGAUGGGAAUUGC	chr6:144811990-144812241(+)$1	251	30	52	10.0241
CACCUUAUGAGUACAUAUAUUU	chr10:121341870-121342115(-)$1	245	165	187	13.8634
CAGCCAUCACCCUGUGAAGCUG	chr10:19884022-19884244(+)$1	222	114	136	10.6156
GUAGAAAUUCUGUGUUUGUGCU	chr14:56103091-56103354(+)$1	263	21	43	9.3778
GAGGCAUUUGUCUGAAUACCUA	chr8:25220477-25220733(+)$1	256	204	226	12.7814
AAAGCUGCUGCACAGCAACUUG	chr10:93695355-93695582(+)$1	227	110	132	12.0599
AAAAAGGCAGAUCUGCUAUUAA	chrX:70787249-70787475(+)$1	226	51	73	12.7674
CACAAGUUCUAAGGAACUGUGG	chr1:62253321-62253606(+)$1	285	183	205	11.6552
CUCCUCUGGAAACCAGGGACCC	chr16:448084-448343(+)$1	259	25	47	10.0916
GAGGGCAGCGGGAGCUGGUGUU	chr7:150777514-150777882(-)$1	368	142	164	12.2501
UACUGCUGUACCGUGCACCAGU	chr3:156876565-156876867(-)$1	302	248	270	10.1994
CGGGGGCCCAGAGGGGCUUCCC	chr19:10221639-10221943(+)$1	304	127	149	11.3772
AGAAAUGGGGUUGCCCAGUGCU	chr4:79176295-79176622(+)$1	327	177	199	12.9363
CCAUGUGUUAAAGAACACCAUU	chr1:39765805-39766068(+)$1	263	171	193	9.3553
AGUUCCUUCGAAAGAAGCUGAU	chr7:127334785-127335002(+)$1	217	118	140	13.4174
GGUGUCUACUGACAGUGAAAUG	chr1:245020861-245021091(-)$1	230	28	50	10.2810
GAUGGGACUGGCUUCCCUGAAC	chr1:19490648-19490869(-)$1	221	10	32	10.9115
GUCCGGGCUGGGCAGCCGAGGG	chr14:104165101-104165367(+)$1	266	133	155	9.4273
UCAGGCGGCGAGGCAGUCGGCU	chr17:79860510-79860762(-)$1	252	138	160	9.9853
CCCGGCAGCAGCAGCUGGAGUG	chr1:9790572-9790796(-)$1	224	184	206	13.1090

#DB
.(((.((((......)))))))	chr3:38207235-38207502(+)$1	1	93	115	8.9056
((...((((....))))...))	chr9:79932422-79932679(+)$1	1	14	36	14.0644
((((.((((....)))))))..	chr3:99568471-99568726(-)$1	1	137	159	9.5517
....(((((....)))))...)	chrM:14158-14379(-)$1	1	102	124	9.5086
((.(.((((....)))).).))	chr4:129208540-129208807(-)$1	1	57	79	13.3783
(....((((....))))....)	chrX:47062471-47062714(+)$1	1	207	229	13.1555
((..(.((((...)))).)..)	chr6:33179568-33179819(+)$1	1	69	91	11.3625
((((.((((....)))).))))	chr8:145107127-145107377(-)$1	1	92	114	11.9249
(((((((((....))))..)))	chr10:19571921-19572198(+)$1	1	208	230	11.0563
((((((((((...))))....)	chr1:245020891-245021111(-)$1	1	48	70	10.2810
(((.(((((....)))))))).	chr1:19436787-19437001(-)$1	1	126	148	8.4243
((...((((.....))))...)	chr21:47931363-47931628(+)$1	1	204	226	10.5902
....(((((....)))))...)	chrM:14179-14384(-)$1	1	107	129	9.5086
...((((......))))...))	chr2:135911257-135911536(+)$1	1	192	214	10.7547
((....(((....)))..))))	chr5:1085421-1085680(-)$1	1	118	140	8.0128
.(((((((.....)))).))).	chr9:711127-711390(+)$1	1	93	115	9.8859
((((.((((....)))).))))	chr5:14330887-14331110(+)$1	1	50	72	12.2842
((((.((((....)))).))))	chr15:28501269-28501540(-)$1	1	4	26	11.9249
.(..((((.....)))).)..)	chr9:117044498-117044709(+)$1	1	181	203	10.3460
(((((((((....)))).))))	chr2:63086281-63086524(+)$1	1	179	201	11.0562
((((((((((...)))).))).	chr16:31195433-31195674(+)$1	1	128	150	10.8509
((...((((....)))))))))	chr1:19484299-19484560(-)$1	1	155	177	12.2352
((((.((((....))))...))	chr8:100147142-100147464(+)$1	1	23	45	12.6731
((((.((((....)))).....	chr10:21823549-21823831(+)$1	1	223	245	10.7096
(((((((((....)))).)).)	chr12:53849568-53849780(+)$1	1	98	120	11.2146
((((.((((.....))))..))	chr5:75967525-75967797(+)$1	1	154	176	9.8935
(((((((......)))).))))	chr1:245021930-245022165(-)$1	1	151	173	9.5427
(((..((((....))))..)))	chr15:28375266-28375549(-)$1	1	13	35	12.1492
((((..((((...)))))))).	chr6:144811990-144812241(+)$1	1	30	52	10.0241
((...((((....))))....)	chr10:121341870-121342115(-)$1	1	165	187	13.8634
((((..((((...)))).))))	chr10:19884022-19884244(+)$1	1	114	136	10.6156
(((.((((.....)))).))))	chr14:56103091-56103354(+)$1	1	21	43	9.3778
.(((.((((....)))).))).	chr8:25220477-25220733(+)$1	1	204	226	12.7814
.(((.((((....)))).)))(	chr10:93695355-93695582(+)$1	1	110	132	12.0599
(....((((....)))).))))	chrX:70787249-70787475(+)$1	1	51	73	12.7674
((((.((((....)))))))).	chr1:62253321-62253606(+)$1	1	183	205	11.6552
.(((.((((...))))))))))	chr16:448084-448343(+)$1	1	25	47	10.0916
((.(.((((....)))).).))	chr7:150777514-150777882(-)$1	1	142	164	12.2501
.((((.((((...)))).))))	chr3:156876565-156876867(-)$1	1	248	270	10.1994
(((((((((....)))).))))	chr19:10221639-10221943(+)$1	1	127	149	11.3772
((...((((....))))...))	chr4:79176295-79176622(+)$1	1	177	199	12.9363
....(((((....)))))....	chr1:39765805-39766068(+)$1	1	171	193	9.3553
.(...((((....)))).)..)	chr7:127334785-127335002(+)$1	1	118	140	13.4174
((((((((((...))))....)	chr1:245020861-245021091(-)$1	1	28	50	10.2810
...((((......))))...))	chr1:19490648-19490869(-)$1	1	10	32	10.9115
)).).((((....))))((((.	chr14:104165101-104165367(+)$1	1	133	155	9.4273
.(((.((((......)))).))	chr17:79860510-79860762(-)$1	1	138	160	9.9853
((((.((((....))))...))	chr1:9790572-9790796(-)$1	1	184	206	13.1090

#PSSM
d : 0.18	c : 0.16	e : 0.10	f : 0.10	# : 0.06	b : 0.06	" : 0.06	[ : 0.06	! : 0.06	: : 0.04	g : 0.04	C : 0.02	i : 0.02	
c : 0.31	d : 0.20	# : 0.10	e : 0.10	f : 0.10	" : 0.04	a : 0.04	b : 0.04	g : 0.02	i : 0.02	
c : 0.22	" : 0.16	d : 0.16	# : 0.12	f : 0.10	e : 0.08	[ : 0.04	! : 0.04	i : 0.02	] : 0.02	
d : 0.20	c : 0.18	" : 0.12	# : 0.12	f : 0.10	a : 0.06	! : 0.06	e : 0.06	[ : 0.04	b : 0.02	
[ : 0.33	d : 0.14	" : 0.12	e : 0.10	f : 0.08	# : 0.06	! : 0.06	a : 0.02	c : 0.02	b : 0.02	: : 0.02	
d : 0.75	e : 0.08	[ : 0.04	f : 0.04	! : 0.04	# : 0.02	c : 0.02	
d : 0.89	e : 0.08	c : 0.02	
d : 0.83	e : 0.08	o : 0.06	c : 0.02	
d : 0.77	e : 0.08	o : 0.06	n : 0.06	c : 0.02	
m : 0.62	d : 0.14	o : 0.10	n : 0.10	l : 0.02	
m : 0.62	l : 0.16	o : 0.10	n : 0.10	
m : 0.62	l : 0.16	o : 0.10	n : 0.10	
m : 0.62	l : 0.14	o : 0.10	n : 0.10	d : 0.02	
d : 0.81	e : 0.08	o : 0.04	n : 0.04	c : 0.02	
d : 0.85	e : 0.08	o : 0.04	c : 0.02	
d : 0.89	e : 0.08	c : 0.02	
d : 0.87	e : 0.08	2 : 0.02	c : 0.02	
] : 0.41	d : 0.16	3 : 0.12	e : 0.08	4 : 0.08	2 : 0.06	c : 0.04	8 : 0.02	
d : 0.20	3 : 0.18	c : 0.14	a : 0.10	4 : 0.10	e : 0.06	2 : 0.06	g : 0.04	f : 0.02	8 : 0.02	b : 0.02	i : 0.02	
3 : 0.18	d : 0.18	c : 0.14	4 : 0.10	2 : 0.08	e : 0.08	] : 0.06	f : 0.04	g : 0.04	8 : 0.02	b : 0.02	i : 0.02	
c : 0.22	d : 0.22	4 : 0.10	e : 0.08	3 : 0.06	2 : 0.06	f : 0.06	g : 0.04	b : 0.04	: : 0.02	8 : 0.02	] : 0.02	i : 0.02	
c : 0.20	e : 0.18	d : 0.14	f : 0.10	b : 0.06	] : 0.06	g : 0.04	4 : 0.04	: : 0.02	3 : 0.02	a : 0.02	8 : 0.02	i : 0.02	2 : 0.02	m : 0.02	

#score	531.7336283663649
#seq	48
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_CDS_m1_run1.txt

#BEAR
gggggggwwwwwwwwwwwwwwgggggg	chr17:7147445-7147663(-)$1	218	126	153	23.2058
[ffffffuuuuuuuuuuuuffffff22	chr12:51442040-51442362(+)$1	322	288	315	23.1136
iiiiiiivvvvvvvvvvvvviiiiiii	chr8:101717055-101717282(-)$1	227	129	156	24.5392
cc[dddduuuuuuuuuuuudddd]ccc	chr9:33953185-33953542(-)$1	357	49	76	24.0064
cc!!cccuuuuuuuuuuuuccc22ccc	chr22:42263106-42263358(+)$1	252	87	114	24.1015
eee"""bbtttttttttttbb333eee	chr17:29654621-29654887(+)$1	266	91	118	22.0186
hhhh[bbuuuuuuuuuuuubbhhhhhh	chr12:54854064-54854327(-)$1	263	122	149	22.3869
ccc[cccuuuuuuuuuuuuccc]cccd	chr4:122739215-122739433(-)$1	218	8	35	24.2316
eeee!!bbtttttttttttbb]eeeee	chr3:40351295-40351554(+)$1	259	181	208	22.5715
:::dddduuuuuuuuuuuuddddccc[	chr12:124839883-124840218(-)$1	335	114	141	20.6832
=======uuuuuuuuuuuu========	chr8:54975807-54976035(-)$1	228	169	196	24.6383
%fffffftttttttttttffffff22e	chr14:102552288-102552519(-)$1	231	92	119	21.0166
bb[eeeeettttttttttteeeee]bb	chr18:3457440-3457746(+)$1	306	85	112	22.3942
hhhddddwwwwwwwwwwwwwwdddd]h	chr1:167345262-167345495(+)$1	233	61	88	22.2460
ffff[bbyyyyyyyyyyyyyyyybb]f	chr12:102468678-102468882(-)$1	204	126	153	19.7948
eeee[bbvvvvvvvvvvvvvbbeeeee	chr11:85707767-85708045(-)$1	278	77	104	23.6912
eeeeeyyyyyyyyyyyyyyyyeeeee:	chr1:33236650-33236876(+)$1	226	123	150	20.4115
hh[ddddvvvvvvvvvvvvvdddd22h	chr15:57543449-57543717(+)$1	268	81	108	23.6787
gggggggwwwwwwwwwwwwwwgggggg	chr17:65941641-65941914(+)$1	273	94	121	23.2058
eeeeebbvvvvvvvvvvvvvbb]eeee	chr12:53856233-53856451(+)$1	218	182	209	23.5682
ffff!!bbtttttttttttbb22ffff	chr2:128753920-128754164(-)$1	244	83	110	21.4222
f!!cccwwwwwwwwwwwwwwccc22ff	chr16:68155968-68156227(+)$1	259	163	190	22.4951
##eeeeettttttttttteeeeeaeee	chr11:67274852-67275068(-)$1	216	168	195	22.3548
a[eeeeeuuuuuuuuuuuueeeeea]d	chr7:75517243-75517513(+)$1	270	80	107	24.3285
###dddduuuuuuuuuuuudddd4444	chr1:114515572-114515851(+)$1	279	38	65	23.6518
"ccc[ccctttttttttttccc]ccce	chr2:96943480-96943750(-)$1	270	236	263	23.4330
$bb[ddddtttttttttttddddbb44	chr16:23701162-23701420(+)$1	258	28	55	21.5868
iiiiiiiitttttttttttiiiiiiii	chr3:184025301-184025531(+)$1	230	47	74	22.9785
ee"""ccctttttttttttccceeeee	chr10:27406406-27406641(-)$1	235	128	155	23.0665
gggggggvvvvvvvvvvvvvggggggg	chr1:27106614-27106849(+)$1	235	69	96	24.4585
!!eeeeeuuuuuuuuuuuueeeeefff	chr14:100743714-100743967(+)$1	253	34	61	24.0496
feeeeevvvvvvvvvvvvveeeee:bb	chr19:49469544-49469748(+)$1	204	48	75	22.2945
###dddduuuuuuuuuuuudddd333b	chr1:114483116-114483361(+)$1	245	28	55	23.8811
c[eeeeeuuuuuuuuuuuueeeee333	chr19:55899568-55899843(+)$1	275	241	268	24.5148
=======uuuuuuuuuuuu========	chr1:41502961-41503240(-)$1	279	21	48	24.6383
bb[dddduuuuuuuuuuuudddd]bb]	chr12:49666356-49666636(+)$1	280	139	166	23.2180
:bb[ddddtttttttttttdddd]bb:	chr4:73956407-73956650(-)$1	243	40	67	20.0555
hh[cccvvvvvvvvvvvvvccc22hhh	chr11:71152222-71152470(-)$1	248	20	47	23.0605
!!bbcccwwwwwwwwwwwwwwccc]bb	chr12:125284582-125284859(-)$1	277	11	38	22.2038
!!eeeeevvvvvvvvvvvvveeeee]d	chr16:30735581-30735825(+)$1	244	162	189	24.6637
:eeeeevvvvvvvvvvvvveeeee:dd	chr1:27059079-27059351(+)$1	272	61	88	21.7965
ddd:cccuuuuuuuuuuuuccc::ddd	chr19:2248424-2248697(+)$1	273	100	127	20.4331
#ffffffuuuuuuuuuuuuffffff22	chr11:125472720-125472944(+)$1	224	101	128	23.0791
c!!ddddwwwwwwwwwwwwwwdddd22	chr18:32706858-32707126(+)$1	268	54	81	22.7410
::eeeeevvvvvvvvvvvvveeeeeDD	chr11:125473950-125474198(+)$1	248	2	29	20.2339
bb[cccvvvvvvvvvvvvvccc]bb]a	chr7:77256434-77256701(+)$1	267	58	85	23.4605
hhhh[awwwwwwwwwwwwwwa]hhhhh	chr5:180670693-180670945(-)$1	252	78	105	21.8030
dd[a[ccctttttttttttcccadddd	chr17:79478430-79478665(-)$1	235	66	93	22.7891
eeee[bbuuuuuuuuuuuubb]eeeee	chr2:171819309-171819545(+)$1	236	118	145	23.6340
eeeeeyyyyyyyyyyyyyyyyeeeee4	chr11:65427068-65427345(-)$1	277	188	215	21.2070
c[fffffftttttttttttffffff]c	chr5:139908001-139908304(+)$1	303	159	186	22.3570
gggggggvvvvvvvvvvvvvggggggg	chr7:138252149-138252428(+)$1	279	198	225	24.4585
hhhhhyyyyyyyyyyyyyyyyhhhhhh	chr2:33413619-33414013(+)$1	394	361	388	19.7702
==eeeeeuuuuuuuuuuuueeeee:::	chr8:11695970-11696210(+)$1	240	90	117	21.6176
dddddddwwwwwwwwwwwwwwdddd]d	chr22:20937085-20937323(+)$1	238	40	67	22.2205
gggggggvvvvvvvvvvvvvggggggg	chr9:114994310-114994569(-)$1	259	129	156	24.4585
dddd[bbvvvvvvvvvvvvvbbddddf	chr19:808622-808829(+)$1	207	122	149	22.7758
bb[ddddvvvvvvvvvvvvvdddd22b	chr12:111953889-111954220(-)$1	331	270	297	23.5553
%fffffftttttttttttffffff22e	chr14:102552270-102552488(-)$1	218	61	88	21.0166
gggggggwwwwwwwwwwwwwwgggggg	chr12:53862474-53862704(+)$1	230	63	90	23.2058
==fffffftttttttttttffffff22	chr12:57921602-57921864(+)$1	262	83	110	22.0767
cc[cccvvvvvvvvvvvvvccc]ccc:	chr3:47632093-47632359(-)$1	266	80	107	23.2239

#otherMatches

#Seq PSSM
GAGCCGAAACCUUCACCAACAUCGGCU	chr17:7147445-7147663(-)$1	218	126	153	23.2058
CAUUCUGUCUCUUAAUUCUCAGAGUUC	chr12:51442040-51442362(+)$1	322	288	315	23.1136
GUGAUUUAAAUUUAUUUACCAAGUUGC	chr8:101717055-101717282(-)$1	227	129	156	24.5392
CAUUGCUUUUUGUCUGCUUAGCAUUGA	chr9:33953185-33953542(-)$1	357	49	76	24.0064
GUAAUGAUCACGCCAACAUUCAGCACC	chr22:42263106-42263358(+)$1	252	87	114	24.1015
AGUCUAUCAUUCAUAUCCGGACCCGCU	chr17:29654621-29654887(+)$1	266	91	118	22.0186
UGCGAGUUCCCAAAUCUCUGCCGUAUG	chr12:54854064-54854327(-)$1	263	122	149	22.3869
UGGAAUUUAACAUAAGCUUAAUGCCAA	chr4:122739215-122739433(-)$1	218	8	35	24.2316
GCCGCCGCCUCCCUCCCUUGCCCGGCG	chr3:40351295-40351554(+)$1	259	181	208	22.5715
CCUGGGCCUCCAUGACACUGCCCGGCC	chr12:124839883-124840218(-)$1	335	114	141	20.6832
GAAUAAGAACAUUAUAUUACUUAUUUA	chr8:54975807-54976035(-)$1	228	169	196	24.6383
AUCCCAGUAAAUUAGACUCUGGGAAAG	chr14:102552288-102552519(-)$1	231	92	119	21.0166
UAGAGGAGACCCCAUUUCAUUCCUGUA	chr18:3457440-3457746(+)$1	306	85	112	22.3942
UGGUGCAUCCAACCACCAAUUUGCAGC	chr1:167345262-167345495(+)$1	233	61	88	22.2460
CAUACGUGCUUUUUUUUUUUUUAAUUU	chr12:102468678-102468882(-)$1	204	126	153	19.7948
UCAAAGCUGCCCAAUGAUCUGCUUGAU	chr11:85707767-85708045(-)$1	278	77	104	23.6912
AGGUGCCUGCCCCCUUCUCCCCACCUC	chr1:33236650-33236876(+)$1	226	123	150	20.4115
CUUUUGGGUUUUAACAGGUACCAGUCA	chr15:57543449-57543717(+)$1	268	81	108	23.6787
UGUUUCAUCCCAUGUCCCUUCUGAAGC	chr17:65941641-65941914(+)$1	273	94	121	23.2058
AGCAUCACACCAAGCCACUCUGCAUGC	chr12:53856233-53856451(+)$1	218	182	209	23.5682
CAUUUACUGUUUGCAGCCAAGGUGGUG	chr2:128753920-128754164(-)$1	244	83	110	21.4222
AUCUCUCCUAACUGUCAUCAAGAAUUA	chr16:68155968-68156227(+)$1	259	163	190	22.4951
GAUGGGCAAAGAGAUCCGGCCUACCUA	chr11:67274852-67275068(-)$1	216	168	195	22.3548
CUGGCUCCUACCCCACACAGAGCUGCC	chr7:75517243-75517513(+)$1	270	80	107	24.3285
CUCAGGAUUCCUCACUUCUUCCUUCUU	chr1:114515572-114515851(+)$1	279	38	65	23.6518
GUGGUGCUCUAAACAUCUCAGCUCCAA	chr2:96943480-96943750(-)$1	270	236	263	23.4330
AGCUCAUCUUGUGCCCACUGAUGGCAG	chr16:23701162-23701420(+)$1	258	28	55	21.5868
GGGGGAAGAUUUGAAGCCCCUUUUUUC	chr3:184025301-184025531(+)$1	230	47	74	22.9785
CUUGGACAUGUAAGUUUUUUGUAGUgu	chr10:27406406-27406641(-)$1	235	128	155	23.0665
GCCCAGGACCCCUUUUCCACCCUGGGC	chr1:27106614-27106849(+)$1	235	69	96	24.4585
UGACAGUGCACGUUCGAAGGCUGUGGG	chr14:100743714-100743967(+)$1	253	34	61	24.0496
CCCUGGAGAAAAAGCUGAACCAGGCCC	chr19:49469544-49469748(+)$1	204	48	75	22.2945
AAACCCUCCCAGCCACACAAGGGCAAG	chr1:114483116-114483361(+)$1	245	28	55	23.8811
GCCAUGUCAUCAAAACUCUGCAUGUCA	chr19:55899568-55899843(+)$1	275	241	268	24.5148
UUUCAGGUGAAACCUUUGUCCUGGGGA	chr1:41502961-41503240(-)$1	279	21	48	24.6383
AGAAAGCCUACCACGAACAGCUUACUG	chr12:49666356-49666636(+)$1	280	139	166	23.2180
CAGUGCCCCCUUACCAUUUGGGCCCUU	chr4:73956407-73956650(-)$1	243	40	67	20.0555
CCUGGCUCCUCACGCACCUGCUCUGGU	chr11:71152222-71152470(-)$1	248	20	47	23.0605
CUGGCAGGACCUGCCAAUAUACUGUCC	chr12:125284582-125284859(-)$1	277	11	38	22.2038
CCGGUUCCGUCACCUCUCCCGAGCCCG	chr16:30735581-30735825(+)$1	244	162	189	24.6637
CACAGCUUUUGUUUUUCUUGUUGUAGG	chr1:27059079-27059351(+)$1	272	61	88	21.7965
CCCCCUCCCCCAACCAACUGAGAAGCU	chr19:2248424-2248697(+)$1	273	100	127	20.4331
CCACCUUACCAAAGAGCUCAAGGUGAA	chr11:125472720-125472944(+)$1	224	101	128	23.0791
UGCAGCUAAAUCAAGUCCAGCAGCUAA	chr18:32706858-32707126(+)$1	268	54	81	22.7410
UUUUCUGGGCUCAUUAUAAACAGAAUG	chr11:125473950-125474198(+)$1	248	2	29	20.2339
UGUAACACAAUCAAACAAAGUUUCAGU	chr7:77256434-77256701(+)$1	267	58	85	23.4605
UGCUAGUUUCUCUAAGCCAUCCAGUGC	chr5:180670693-180670945(-)$1	252	78	105	21.8030
GCUGUCCCUCUACGCCUCUGGGCGCAC	chr17:79478430-79478665(-)$1	235	66	93	22.7891
GGUUGGCUUACCAGAACUUGUAAACCC	chr2:171819309-171819545(+)$1	236	118	145	23.6340
CUCAUCCCAUCUUUGACAAUCGUGAGU	chr11:65427068-65427345(-)$1	277	188	215	21.2070
UUGGAGGAACCUUCUCACCUUCUCCUA	chr5:139908001-139908304(+)$1	303	159	186	22.3570
AAAGCCAAACCCCCUACAGAUGGCUUU	chr7:138252149-138252428(+)$1	279	198	225	24.4585
AAAGCCAGACUUGAUAAAAAUGCUUUU	chr2:33413619-33414013(+)$1	394	361	388	19.7702
GUACCUGACCACUCUCUCCCAGGUAAC	chr8:11695970-11696210(+)$1	240	90	117	21.6176
GCUCUGGCCCUGCCCCAUCUCCCAGUA	chr22:20937085-20937323(+)$1	238	40	67	22.2205
UUCCUGGGGCUAGUGGUAUACCAGGAA	chr9:114994310-114994569(-)$1	259	129	156	24.4585
GCACCUCUCCAACAUCCCGUGAGUGCU	chr19:808622-808829(+)$1	207	122	149	22.7758
ACCACAAUUUGUUCAUGUUUUUGUUUG	chr12:111953889-111954220(-)$1	331	270	297	23.5553
AUCCCAGUAAAUUAGACUCUGGGAAAG	chr14:102552270-102552488(-)$1	218	61	88	21.0166
GCUUGCUCUCUUCUGUCUUUUAGCAGG	chr12:53862474-53862704(+)$1	230	63	90	23.2058
UCCUGGCCCUCUUCUCUCUGGCCAGUU	chr12:57921602-57921864(+)$1	262	83	110	22.0767
GCCGCAUGAUUCCCACUGUUGCAGCCA	chr3:47632093-47632359(-)$1	266	80	107	23.2239

#DB
(((((((..............))))))	chr17:7147445-7147663(-)$1	1	126	153	23.2058
.((((((............))))))..	chr12:51442040-51442362(+)$1	1	288	315	23.1136
(((((((.............)))))))	chr8:101717055-101717282(-)$1	1	129	156	24.5392
((.((((............)))).)))	chr9:33953185-33953542(-)$1	1	49	76	24.0064
((..(((............)))..)))	chr22:42263106-42263358(+)$1	1	87	114	24.1015
(((...((...........))...)))	chr17:29654621-29654887(+)$1	1	91	118	22.0186
((((.((............))))))))	chr12:54854064-54854327(-)$1	1	122	149	22.3869
(((.(((............))).))))	chr4:122739215-122739433(-)$1	1	8	35	24.2316
((((..((...........)).)))))	chr3:40351295-40351554(+)$1	1	181	208	22.5715
...((((............))))(((.	chr12:124839883-124840218(-)$1	1	114	141	20.6832
(((((((............))))))))	chr8:54975807-54976035(-)$1	1	169	196	24.6383
.((((((...........))))))..)	chr14:102552288-102552519(-)$1	1	92	119	21.0166
((.(((((...........))))).))	chr18:3457440-3457746(+)$1	1	85	112	22.3942
(((((((..............)))).)	chr1:167345262-167345495(+)$1	1	61	88	22.2460
((((.((................)).)	chr12:102468678-102468882(-)$1	1	126	153	19.7948
((((.((.............)))))))	chr11:85707767-85708045(-)$1	1	77	104	23.6912
(((((................))))).	chr1:33236650-33236876(+)$1	1	123	150	20.4115
((.((((.............))))..)	chr15:57543449-57543717(+)$1	1	81	108	23.6787
(((((((..............))))))	chr17:65941641-65941914(+)$1	1	94	121	23.2058
(((((((.............)).))))	chr12:53856233-53856451(+)$1	1	182	209	23.5682
((((..((...........))..))))	chr2:128753920-128754164(-)$1	1	83	110	21.4222
(..(((..............)))..))	chr16:68155968-68156227(+)$1	1	163	190	22.4951
..(((((...........)))))))))	chr11:67274852-67275068(-)$1	1	168	195	22.3548
(.(((((............)))))).)	chr7:75517243-75517513(+)$1	1	80	107	24.3285
...((((............))))....	chr1:114515572-114515851(+)$1	1	38	65	23.6518
.(((.(((...........))).))))	chr2:96943480-96943750(-)$1	1	236	263	23.4330
.((.((((...........))))))..	chr16:23701162-23701420(+)$1	1	28	55	21.5868
((((((((...........))))))))	chr3:184025301-184025531(+)$1	1	47	74	22.9785
((...(((...........))))))))	chr10:27406406-27406641(-)$1	1	128	155	23.0665
(((((((.............)))))))	chr1:27106614-27106849(+)$1	1	69	96	24.4585
..(((((............))))))))	chr14:100743714-100743967(+)$1	1	34	61	24.0496
)(((((.............))))).((	chr19:49469544-49469748(+)$1	1	48	75	22.2945
...((((............))))...)	chr1:114483116-114483361(+)$1	1	28	55	23.8811
(.(((((............)))))...	chr19:55899568-55899843(+)$1	1	241	268	24.5148
(((((((............))))))))	chr1:41502961-41503240(-)$1	1	21	48	24.6383
((.((((............)))).)).	chr12:49666356-49666636(+)$1	1	139	166	23.2180
.((.((((...........)))).)).	chr4:73956407-73956650(-)$1	1	40	67	20.0555
((.(((.............)))..)))	chr11:71152222-71152470(-)$1	1	20	47	23.0605
..(((((..............))).))	chr12:125284582-125284859(-)$1	1	11	38	22.2038
..(((((.............))))).)	chr16:30735581-30735825(+)$1	1	162	189	24.6637
.(((((.............))))).((	chr1:27059079-27059351(+)$1	1	61	88	21.7965
))).(((............)))..(((	chr19:2248424-2248697(+)$1	1	100	127	20.4331
.((((((............))))))..	chr11:125472720-125472944(+)$1	1	101	128	23.0791
(..((((..............))))..	chr18:32706858-32707126(+)$1	1	54	81	22.7410
..(((((.............)))))((	chr11:125473950-125474198(+)$1	1	2	29	20.2339
((.(((.............))).)).)	chr7:77256434-77256701(+)$1	1	58	85	23.4605
((((.(..............).)))))	chr5:180670693-180670945(-)$1	1	78	105	21.8030
((.(.(((...........))))))))	chr17:79478430-79478665(-)$1	1	66	93	22.7891
((((.((............)).)))))	chr2:171819309-171819545(+)$1	1	118	145	23.6340
(((((................))))).	chr11:65427068-65427345(-)$1	1	188	215	21.2070
(.((((((...........)))))).)	chr5:139908001-139908304(+)$1	1	159	186	22.3570
(((((((.............)))))))	chr7:138252149-138252428(+)$1	1	198	225	24.4585
(((((................))))))	chr2:33413619-33414013(+)$1	1	361	388	19.7702
))(((((............)))))...	chr8:11695970-11696210(+)$1	1	90	117	21.6176
(((((((..............)))).)	chr22:20937085-20937323(+)$1	1	40	67	22.2205
(((((((.............)))))))	chr9:114994310-114994569(-)$1	1	129	156	24.4585
((((.((.............))))))(	chr19:808622-808829(+)$1	1	122	149	22.7758
((.((((.............))))..)	chr12:111953889-111954220(-)$1	1	270	297	23.5553
.((((((...........))))))..)	chr14:102552270-102552488(-)$1	1	61	88	21.0166
(((((((..............))))))	chr12:53862474-53862704(+)$1	1	63	90	23.2058
((((((((...........))))))..	chr12:57921602-57921864(+)$1	1	83	110	22.0767
((.(((.............))).))).	chr3:47632093-47632359(-)$1	1	80	107	23.2239

#PSSM
e : 0.12	c : 0.11	g : 0.09	h : 0.09	: : 0.06	= : 0.06	b : 0.06	f : 0.06	# : 0.06	d : 0.06	! : 0.04	i : 0.03	% : 0.03	[ : 0.01	a : 0.01	" : 0.01	$ : 0.01	
e : 0.16	g : 0.09	f : 0.09	h : 0.09	b : 0.09	c : 0.08	! : 0.08	= : 0.06	d : 0.06	# : 0.04	[ : 0.04	i : 0.03	: : 0.03	
e : 0.25	[ : 0.14	f : 0.12	g : 0.09	h : 0.06	! : 0.04	b : 0.04	d : 0.04	i : 0.03	c : 0.03	= : 0.03	# : 0.03	: : 0.01	" : 0.01	
e : 0.25	d : 0.17	f : 0.12	g : 0.09	c : 0.08	h : 0.04	[ : 0.04	i : 0.03	" : 0.03	= : 0.03	! : 0.01	b : 0.01	: : 0.01	a : 0.01	
e : 0.20	d : 0.19	c : 0.12	[ : 0.12	g : 0.09	f : 0.09	i : 0.03	" : 0.03	! : 0.03	= : 0.03	h : 0.01	
d : 0.19	c : 0.17	e : 0.16	g : 0.09	f : 0.09	b : 0.09	y : 0.04	i : 0.03	! : 0.03	= : 0.03	" : 0.01	a : 0.01	
d : 0.19	b : 0.14	e : 0.12	c : 0.11	g : 0.09	f : 0.09	v : 0.08	y : 0.04	i : 0.03	= : 0.03	w : 0.03	
u : 0.29	v : 0.25	w : 0.14	y : 0.06	b : 0.04	t : 0.04	c : 0.04	d : 0.03	f : 0.03	e : 0.01	i : 0.01	
u : 0.29	v : 0.25	t : 0.24	w : 0.14	y : 0.06	
u : 0.29	v : 0.25	t : 0.24	w : 0.14	y : 0.06	
u : 0.29	v : 0.25	t : 0.24	w : 0.14	y : 0.06	
u : 0.29	v : 0.25	t : 0.24	w : 0.14	y : 0.06	
u : 0.29	v : 0.25	t : 0.24	w : 0.14	y : 0.06	
u : 0.29	v : 0.25	t : 0.24	w : 0.14	y : 0.06	
u : 0.29	v : 0.25	t : 0.24	w : 0.14	y : 0.06	
u : 0.29	v : 0.25	t : 0.24	w : 0.14	y : 0.06	
u : 0.29	v : 0.25	t : 0.24	w : 0.14	y : 0.06	
u : 0.29	v : 0.25	t : 0.24	w : 0.14	y : 0.06	
u : 0.29	v : 0.25	t : 0.19	w : 0.14	y : 0.06	f : 0.03	e : 0.01	
v : 0.17	w : 0.14	c : 0.14	e : 0.12	d : 0.11	f : 0.09	b : 0.08	y : 0.06	= : 0.03	i : 0.01	
c : 0.16	e : 0.16	d : 0.14	b : 0.12	w : 0.11	f : 0.09	y : 0.06	g : 0.04	i : 0.03	= : 0.03	a : 0.01	
d : 0.19	e : 0.19	c : 0.17	g : 0.09	f : 0.09	] : 0.04	b : 0.04	i : 0.03	h : 0.03	= : 0.03	3 : 0.01	y : 0.01	2 : 0.01	
e : 0.25	d : 0.20	g : 0.09	f : 0.09	] : 0.08	2 : 0.04	h : 0.04	i : 0.03	= : 0.03	c : 0.03	3 : 0.01	y : 0.01	: : 0.01	a : 0.01	
e : 0.25	f : 0.11	d : 0.11	g : 0.09	c : 0.08	] : 0.04	2 : 0.04	h : 0.04	b : 0.04	i : 0.03	3 : 0.03	= : 0.03	a : 0.01	4 : 0.01	: : 0.01	
e : 0.17	g : 0.09	f : 0.09	c : 0.09	d : 0.09	2 : 0.08	b : 0.08	h : 0.06	: : 0.04	i : 0.03	= : 0.03	] : 0.03	3 : 0.03	a : 0.01	4 : 0.01	
e : 0.14	2 : 0.12	] : 0.11	g : 0.09	c : 0.09	b : 0.08	h : 0.06	d : 0.06	f : 0.04	i : 0.03	= : 0.03	4 : 0.03	3 : 0.03	D : 0.01	: : 0.01	
e : 0.16	d : 0.11	g : 0.09	h : 0.09	b : 0.08	f : 0.08	2 : 0.06	: : 0.06	c : 0.04	4 : 0.04	i : 0.03	= : 0.03	[ : 0.01	3 : 0.01	] : 0.01	D : 0.01	a : 0.01	

#score	1409.7762331748336
#seq	62
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_UTR_m2_run2.txt

#BEAR
abb[a[gggggggooooooggggggg]a22	chr22:20109685-20109926(+)$1	241	22	52	12.2537
eeee[bb[bb[aooooooa]bb]bb]eeee	chr10:70545840-70546076(+)$1	236	10	40	10.7781
eeee[ccc!!cccooooooccc]ccc22ee	chr12:56194244-56194456(-)$1	212	7	37	13.5246
dd$$$$$ccc"""aooooooa22ccc6666	chr1:38423689-38423982(-)$1	293	77	107	11.7527
cccccc[ffffffooooooffffff]ccc]	chr14:73565990-73566235(+)$1	245	76	106	12.0017
eeee[bb"""cccoooooocccbbeeeeed	chr1:27272604-27272877(+)$1	273	10	40	11.9780
$$$ccc[ccc[bboooooobb]ccc]ccc5	chr1:228285854-228286148(+)$1	294	201	231	13.8589
:ccc"""ccc!!bbnnnnnbb22ccc4444	chr1:153591242-153591612(-)$1	370	73	103	11.5589
c[ccc[bb!!cccnnnnnccc22bb22ccc	chr9:35731969-35732280(-)$1	311	177	207	11.1889
bbcccbb####cccmmmmccc333bb]ccc	chr14:102550954-102551188(-)$1	234	89	119	10.7924
c!!cccdddd[bboooooobb22dddd444	chr3:50114339-50114593(+)$1	254	46	76	14.1549
#eeeeeccc!!bboooooobb22ccc333e	chr16:46731324-46731633(+)$1	309	187	217	15.1475
cccccc!!eeeeeooooooeeeee333ccc	chr22:20097447-20097760(+)$1	313	132	162	13.5441
eeee[dddd!!bboooooobb22ddddeee	chr19:55648408-55648671(-)$1	263	120	150	12.8438
ccc[bba[eeeeeooooooeeeee333a]b	chr9:139562571-139562814(+)$1	243	138	168	12.2893
e[bb!!ccc[cccooooooccc]cccbb]e	chr19:39138194-39138504(+)$1	310	235	265	12.7722
dd[ccc####ddddllldddd]ccc22ddd	chr17:42284472-42284792(-)$1	320	152	182	10.2621
bb[ccc[ddddoooooodddd22ccc]bbd	chr19:13888857-13889126(+)$1	269	216	246	10.8508
!!ccc[gggggggooooooggggggg]ccc	chr17:37006364-37006567(-)$1	203	93	123	13.5782
!ccc####eeeeeooooooeeeee4444cc	chr22:22899798-22900050(-)$1	252	46	76	13.9370
####a!!bb!!cccmmmmccc22bb22a22	chr11:59573710-59573957(-)$1	247	77	107	10.8034
dd[ccc"""ddddmmmmdddd]ccc333dd	chr1:150598015-150598334(-)$1	319	3	33	10.4286
$$$$eeeee!!bboooooobb22eeeee>>	chr19:13888787-13889052(+)$1	265	148	178	12.5147
cc[bb[ccc!!bboooooobb22ccc]bb]	chr1:46079880-46080139(+)$1	259	145	175	14.8266
::ccc"""a!!bboooooobb22a333ccc	chr9:116170938-116171209(-)$1	271	104	134	15.5058
a[ccc!!ffffffooooooffffff]ccc]	chr5:140085129-140085479(+)$1	350	24	54	12.4809
=============oooooo===========	chr8:124381288-124381516(-)$1	228	55	85	13.5921
##ccc####fffffflllffffff333ccc	chr14:24686130-24686426(-)$1	296	83	113	10.2328
[bb####ccc[bboooooobb]ccc4444b	chr19:10273901-10274135(-)$1	234	119	149	14.8874
ff[ccc"""ddddllldddd333ccc]fff	chr7:77378714-77379013(+)$1	299	142	172	10.6772
""ccc!!ddddoooooodddd22ccc22ee	chr19:10505895-10506116(-)$1	221	161	191	11.9087
cc[ccc####cccnnnnnccc333cccccc	chr11:122929751-122929994(-)$1	243	189	219	12.3786
eeeeccc[eeeeeooooooeeeee22ccc4	chr11:59573621-59573910(-)$1	289	219	249	11.6725
cc[ggggggg[bboooooobb]ggggggg]	chr6:76311801-76312074(+)$1	273	32	62	13.5859
cc[bb!!bb[aooooooa]bb22bb]ccc4	chr11:62494441-62494785(-)$1	344	145	175	12.2582
bbccc####ddddoooooodddd22ccc]b	chr17:75484736-75485046(+)$1	310	150	180	12.3959
!!ccc[gggggggooooooggggggg]ccc	chr17:37006287-37006532(-)$1	245	58	88	13.5782
$$$bb####ddddmmmmdddd333bb4444	chr16:87425893-87426149(+)$1	256	28	58	10.2949
cffffff"""cccooooooccc]ffffff4	chr16:58231503-58231771(-)$1	268	123	153	12.8866
e[eeeee[a"""ccclllccc333a]eeee	chr16:89348897-89349137(-)$1	240	67	97	10.1108
fffff"""eeeeeooooooeeeee4444ff	chr14:24679759-24680075(-)$1	316	233	263	12.7146
"ccc####eeeeeooooooeeeee4444cc	chr6:163955915-163956155(+)$1	240	164	194	13.9266
ffffff$$$$$bboooooobb333ffffff	chr15:78841058-78841367(+)$1	309	96	126	13.4519
ggggg####ddddooooooddddggggggg	chr19:55649255-55649543(-)$1	288	67	97	12.7341
eeee"""ccc!!ccclllccc22ccceeee	chr17:61896959-61897274(-)$1	315	156	186	10.8861
ee"""ccc"""bboooooobb22ccc]eee	chr22:21224522-21224770(+)$1	248	59	89	15.4775
eee!!bb[bb[bboooooobb]bbbb4444	chr15:78790633-78790966(+)$1	333	68	98	13.1070
dddd[ccc"""cccmmmmccc22ccc]ddd	chr16:4910597-4910969(+)$1	372	203	233	10.4346
[a[ddddccc[bboooooobb]ccc]dddd	chrX:150156690-150156967(+)$1	277	185	215	13.0247
bbcccbb####cccmmmmccc333bb]ccc	chr14:102550988-102551198(-)$1	210	99	129	10.7924
[ccca[dddd[bboooooobb]dddd]a]c	chr3:112256892-112257101(-)$1	209	143	173	13.4121
eeee$$$$$ddddoooooodddd666666e	chr12:113596759-113597019(-)$1	260	206	236	9.9813
f####bb####bboooooobbbbfffffff	chr4:83294869-83295106(-)$1	237	119	149	12.7891
###ccc!!ccc[ammmma]cccccc22ccc	chr19:5649837-5650063(+)$1	226	145	175	10.6539
f!!ffffff!!bboooooobb22ffffff4	chr20:5095614-5095884(-)$1	270	213	243	13.7521

#otherMatches

#Seq PSSM
AGUUGUCCUGUGUCCUCCUGCGCAGGCCCU	chr22:20109685-20109926(+)$1	241	22	52	12.2537
UGUAUUAAUGACUUUUUUGCCACUGUUAUA	chr10:70545840-70546076(+)$1	236	10	40	10.7781
GAUUUAUGUUAACCACCUUGUUUCAUUUGG	chr12:56194244-56194456(-)$1	212	7	37	13.5246
GUGAAUAAGAAGACAUACGAGGAUCUGAAA	chr1:38423689-38423982(-)$1	293	77	107	11.7527
UCUUGGUGGAUUUUUUCACAGAUUUUCCGC	chr14:73565990-73566235(+)$1	245	76	106	12.0017
CUCCAGGUUCAUGGAUCAACAUCCGGAGAU	chr1:27272604-27272877(+)$1	273	10	40	11.9780
CCUUGGCUUUAGAGCUGUGUUGAAAUCCAU	chr1:228285854-228286148(+)$1	294	201	231	13.8589
ACCCUUCCCUUUGGUGUCUCCUCAGGAUGU	chr1:153591242-153591612(-)$1	370	73	103	11.5589
cggcgggcggggcgcagagccaggcagcgc	chr9:35731969-35732280(-)$1	311	177	207	11.1889
UCCCGACGAUAUUACUAAUGAGGAGUACGG	chr14:102550954-102551188(-)$1	234	89	119	10.7924
CGCUGAGGCUAAUUAAUCUAUAGGGCCCAC	chr3:50114339-50114593(+)$1	254	46	76	14.1549
CUGGUAUACAUUCCAAACUGAUAGUACAUU	chr16:46731324-46731633(+)$1	309	187	217	15.1475
UGUGGCGUCCGCCCAGCCUGGCGGUGAGCC	chr22:20097447-20097760(+)$1	313	132	162	13.5441
GGGGCGGGAGAUGAAGGUGCGCAUCCUCUC	chr19:55648408-55648671(-)$1	263	120	150	12.8438
GCCACCCCGCCUGGAGGCACAGGCCAUGAG	chr9:139562571-139562814(+)$1	243	138	168	12.2893
CAGCAGCGCGGGCAAUGGCGCUGGCGGCGG	chr19:39138194-39138504(+)$1	310	235	265	12.7722
AGGGGACUCCUCAGACUCUGACUCCAACUG	chr17:42284472-42284792(-)$1	320	152	182	10.2621
UCAUCCCACAGGCUGCACUGUCAGGAAGAG	chr19:13888857-13889126(+)$1	269	216	246	10.8508
AAUGCAGGUUCUGCCAUUACAGGACCAGUA	chr17:37006364-37006567(-)$1	203	93	123	13.5782
CCAGCAACUUCGCGGUGUGGUGAACUCUCU	chr22:22899798-22900050(-)$1	252	46	76	13.9370
AUAUGACUUGACCCACAAGGGGAAAUACUG	chr11:59573710-59573957(-)$1	247	77	107	10.8034
GGAAGGCCAGAGUCCUCACUCACCUAAACC	chr1:150598015-150598334(-)$1	319	3	33	10.4286
AGAAGCUGGCACUGCUGAAGGCCCCAGCCA	chr19:13888787-13889052(+)$1	265	148	178	12.5147
AGUGUUGAAUCUGGUAAUGCAUUUUCCAUU	chr1:46079880-46080139(+)$1	259	145	175	14.8266
gaaguagaCAACUGAAAAGGGCGGGAGACU	chr9:116170938-116171209(-)$1	271	104	134	15.5058
UGGCUGAGGAGUCUAAACUGAUUCUGAGUG	chr5:140085129-140085479(+)$1	350	24	54	12.4809
uauauauauauauauacaaauauauauaua	chr8:124381288-124381516(-)$1	228	55	85	13.5921
UUAGGCAGUGAUGGACCCUCCAUUUUACCU	chr14:24686130-24686426(-)$1	296	83	113	10.2328
UCAACCCAAAGAUCUGUAAGUGUUUAAAAU	chr19:10273901-10274135(-)$1	234	119	149	14.8874
AAAUCUAUUCAGACCAUCUGCUCAGGAUUG	chr7:77378714-77379013(+)$1	299	142	172	10.6772
GGAGACAGCCAAUUACCUGGUCAUUUGGUG	chr19:10505895-10506116(-)$1	221	161	191	11.9087
ACUACCUAUUCUGACAACCAGCCUGGUGUG	chr11:122929751-122929994(-)$1	243	189	219	12.3786
UUCUGAAAAACAAUGUUAUUUGUUGAUUUA	chr11:59573621-59573910(-)$1	289	219	249	11.6725
AAGGGAGGCGUGUUUGUGUGCUCGCUUUCA	chr6:76311801-76312074(+)$1	273	32	62	13.5859
gcggcggcggcgauggaggugaagcggcug	chr11:62494441-62494785(-)$1	344	145	175	12.2582
GCGCAUCCCGGACACCCGCGUCCACUGCUG	chr17:75484736-75485046(+)$1	310	150	180	12.3959
AAUGCAGGUUCUGCCAUUACAGGACCAGUA	chr17:37006287-37006532(-)$1	245	58	88	13.5782
CAAGGGAAGUGGCUAUCGCCAGAGUCGGAU	chr16:87425893-87426149(+)$1	256	28	58	10.2949
cgcccgccaugcccggcccggccgcgGGCA	chr16:58231503-58231771(-)$1	268	123	153	12.8866
GAAGACUCCAACGAUAAAAUCAGCGAGGUC	chr16:89348897-89349137(-)$1	240	67	97	10.1108
GUCAGGGAAUAUUGCAGAAAGUAUGGGACU	chr14:24679759-24680075(-)$1	316	233	263	12.7146
GUGGAAGAUGCUCAGAACAGAGCAGAAAUC	chr6:163955915-163956155(+)$1	240	164	194	13.9266
GAGAAUGGAAAGACAGUAAUCAGAGUUCUC	chr15:78841058-78841367(+)$1	309	96	126	13.4519
GGAGUCCAUGAGGUUAACCCCUUACUUCCC	chr19:55649255-55649543(-)$1	288	67	97	12.7341
AGGGUGUGGCAUGGCUCAGUCUGGCCCCCU	chr17:61896959-61897274(-)$1	315	156	186	10.8861
AGUCACAGAAAGCUAUAAUGCCACUGCCUC	chr22:21224522-21224770(+)$1	248	59	89	15.4775
UGUGAAGUGUGUUGUGGAAGAGACCUGUAA	chr15:78790633-78790966(+)$1	333	68	98	13.1070
GCGGUCCCAUCAGCGGAAGCUCAGGGCCUG	chr16:4910597-4910969(+)$1	372	203	233	10.4346
CUGUAGCUCAGGGCGUGCACUGUGAGGCUG	chrX:150156690-150156967(+)$1	277	185	215	13.0247
UCCCGACGAUAUUACUAAUGAGGAGUACGG	chr14:102550988-102551198(-)$1	210	99	129	10.7924
AUGGAUGAACUUGGGGAUGCAUGUUCUUAC	chr3:112256892-112257101(-)$1	209	143	173	13.4121
CUGCACUUCCUGCAGCGUGGUGGCCUCAAG	chr12:113596759-113597019(-)$1	260	206	236	9.9813
CAGGAGCCUUUGCAGCCACGCGCGCGCCUU	chr4:83294869-83295106(-)$1	237	119	149	12.7891
AAGGGUAGGUCACCUCGGCGACACCAGUCC	chr19:5649837-5650063(+)$1	226	145	175	10.6539
GGGUCUUGACUCUAAAUGCAGUUUUAAGAA	chr20:5095614-5095884(-)$1	270	213	243	13.7521

#DB
(((.(.(((((((......))))))).)..	chr22:20109685-20109926(+)$1	1	22	52	12.2537
((((.((.((.(......).)).)).))))	chr10:70545840-70546076(+)$1	1	10	40	10.7781
((((.(((..(((......))).)))..))	chr12:56194244-56194456(-)$1	1	7	37	13.5246
((.....(((...(......)..)))....	chr1:38423689-38423982(-)$1	1	77	107	11.7527
((((((.((((((......)))))).))).	chr14:73565990-73566235(+)$1	1	76	106	12.0017
((((.((...(((......))))))))))(	chr1:27272604-27272877(+)$1	1	10	40	11.9780
...(((.(((.((......)).))).))).	chr1:228285854-228286148(+)$1	1	201	231	13.8589
.(((...(((..((.....))..)))....	chr1:153591242-153591612(-)$1	1	73	103	11.5589
(.(((.((..(((.....)))..))..)))	chr9:35731969-35732280(-)$1	1	177	207	11.1889
(((((((....(((....)))...)).)))	chr14:102550954-102551188(-)$1	1	89	119	10.7924
(..(((((((.((......))..))))...	chr3:50114339-50114593(+)$1	1	46	76	14.1549
.((((((((..((......))..)))...)	chr16:46731324-46731633(+)$1	1	187	217	15.1475
((((((..(((((......)))))...)))	chr22:20097447-20097760(+)$1	1	132	162	13.5441
((((.((((..((......))..)))))))	chr19:55648408-55648671(-)$1	1	120	150	12.8438
(((.(((.(((((......)))))...).)	chr9:139562571-139562814(+)$1	1	138	168	12.2893
(.((..(((.(((......))).))))).)	chr19:39138194-39138504(+)$1	1	235	265	12.7722
((.(((....((((...)))).)))..)))	chr17:42284472-42284792(-)$1	1	152	182	10.2621
((.(((.((((......))))..))).))(	chr19:13888857-13889126(+)$1	1	216	246	10.8508
..(((.(((((((......))))))).)))	chr17:37006364-37006567(-)$1	1	93	123	13.5782
.(((....(((((......)))))....))	chr22:22899798-22900050(-)$1	1	46	76	13.9370
....(..((..(((....)))..))..)..	chr11:59573710-59573957(-)$1	1	77	107	10.8034
((.(((...((((....)))).)))...))	chr1:150598015-150598334(-)$1	1	3	33	10.4286
....(((((..((......))..)))))..	chr19:13888787-13889052(+)$1	1	148	178	12.5147
((.((.(((..((......))..))).)).	chr1:46079880-46080139(+)$1	1	145	175	14.8266
..(((...(..((......))..)...)))	chr9:116170938-116171209(-)$1	1	104	134	15.5058
(.(((..((((((......)))))).))).	chr5:140085129-140085479(+)$1	1	24	54	12.4809
(((((((((((((......)))))))))))	chr8:124381288-124381516(-)$1	1	55	85	13.5921
..(((....((((((...))))))...)))	chr14:24686130-24686426(-)$1	1	83	113	10.2328
.((....(((.((......)).)))....)	chr19:10273901-10274135(-)$1	1	119	149	14.8874
((.(((...((((...))))...))).)))	chr7:77378714-77379013(+)$1	1	142	172	10.6772
..(((..((((......))))..)))..))	chr19:10505895-10506116(-)$1	1	161	191	11.9087
((.(((....(((.....)))...))))))	chr11:122929751-122929994(-)$1	1	189	219	12.3786
(((((((.(((((......)))))..))).	chr11:59573621-59573910(-)$1	1	219	249	11.6725
((.(((((((.((......)).))))))).	chr6:76311801-76312074(+)$1	1	32	62	13.5859
((.((..((.(......).))..)).))).	chr11:62494441-62494785(-)$1	1	145	175	12.2582
(((((....((((......))))..))).)	chr17:75484736-75485046(+)$1	1	150	180	12.3959
..(((.(((((((......))))))).)))	chr17:37006287-37006532(-)$1	1	58	88	13.5782
...((....((((....))))...))....	chr16:87425893-87426149(+)$1	1	28	58	10.2949
(((((((...(((......))).)))))).	chr16:58231503-58231771(-)$1	1	123	153	12.8866
(.(((((.(...(((...)))...).))))	chr16:89348897-89349137(-)$1	1	67	97	10.1108
(((((...(((((......)))))....))	chr14:24679759-24680075(-)$1	1	233	263	12.7146
.(((....(((((......)))))....))	chr6:163955915-163956155(+)$1	1	164	194	13.9266
((((((.....((......))...))))))	chr15:78841058-78841367(+)$1	1	96	126	13.4519
(((((....((((......)))))))))))	chr19:55649255-55649543(-)$1	1	67	97	12.7341
((((...(((..(((...)))..)))))))	chr17:61896959-61897274(-)$1	1	156	186	10.8861
((...(((...((......))..))).)))	chr22:21224522-21224770(+)$1	1	59	89	15.4775
(((..((.((.((......)).))))....	chr15:78790633-78790966(+)$1	1	68	98	13.1070
((((.(((...(((....)))..))).)))	chr16:4910597-4910969(+)$1	1	203	233	10.4346
.(.(((((((.((......)).))).))))	chrX:150156690-150156967(+)$1	1	185	215	13.0247
(((((((....(((....)))...)).)))	chr14:102550988-102551198(-)$1	1	99	129	10.7924
.((((.((((.((......)).)))).).)	chr3:112256892-112257101(-)$1	1	143	173	13.4121
((((.....((((......))))......)	chr12:113596759-113597019(-)$1	1	206	236	9.9813
(....((....((......)))))))))))	chr4:83294869-83295106(-)$1	1	119	149	12.7891
...(((..(((.(....).))))))..)))	chr19:5649837-5650063(+)$1	1	145	175	10.6539
(..((((((..((......))..)))))).	chr20:5095614-5095884(-)$1	1	213	243	13.7521

#PSSM
e : 0.20	c : 0.18	f : 0.09	d : 0.07	b : 0.07	# : 0.07	$ : 0.05	! : 0.05	[ : 0.05	a : 0.03	: : 0.03	" : 0.03	= : 0.01	g : 0.01	
c : 0.20	e : 0.18	b : 0.10	d : 0.07	[ : 0.07	! : 0.07	# : 0.07	f : 0.07	$ : 0.05	: : 0.01	= : 0.01	" : 0.01	g : 0.01	a : 0.01	
c : 0.30	e : 0.18	[ : 0.16	$ : 0.07	b : 0.05	# : 0.05	f : 0.05	! : 0.03	= : 0.01	g : 0.01	" : 0.01	d : 0.01	
c : 0.43	e : 0.16	b : 0.07	f : 0.07	# : 0.05	[ : 0.03	$ : 0.03	g : 0.03	d : 0.03	= : 0.01	" : 0.01	! : 0.01	
c : 0.38	[ : 0.09	b : 0.07	# : 0.07	f : 0.07	a : 0.05	" : 0.05	e : 0.05	$ : 0.03	! : 0.03	g : 0.03	= : 0.01	d : 0.01	
c : 0.25	b : 0.12	# : 0.12	[ : 0.10	! : 0.09	" : 0.07	e : 0.05	f : 0.05	$ : 0.03	d : 0.03	= : 0.01	g : 0.01	
# : 0.16	b : 0.12	c : 0.12	" : 0.10	! : 0.10	g : 0.07	d : 0.07	$ : 0.05	[ : 0.05	e : 0.03	f : 0.03	a : 0.01	= : 0.01	
c : 0.21	# : 0.20	" : 0.10	[ : 0.09	d : 0.09	g : 0.07	f : 0.05	b : 0.05	! : 0.03	$ : 0.03	e : 0.01	= : 0.01	
c : 0.18	# : 0.16	e : 0.12	" : 0.10	d : 0.09	g : 0.07	b : 0.07	f : 0.05	! : 0.03	a : 0.03	$ : 0.03	= : 0.01	
d : 0.18	! : 0.16	c : 0.12	e : 0.10	" : 0.09	# : 0.09	g : 0.07	f : 0.05	b : 0.03	[ : 0.03	= : 0.01	$ : 0.01	
! : 0.16	d : 0.16	[ : 0.14	c : 0.12	e : 0.10	" : 0.07	g : 0.05	f : 0.05	# : 0.05	= : 0.01	a : 0.01	$ : 0.01	
b : 0.29	c : 0.18	d : 0.12	e : 0.10	g : 0.05	f : 0.05	o : 0.05	" : 0.03	! : 0.03	a : 0.01	= : 0.01	[ : 0.01	
b : 0.30	c : 0.21	d : 0.12	e : 0.10	o : 0.07	g : 0.05	f : 0.05	" : 0.01	= : 0.01	a : 0.01	
o : 0.70	c : 0.10	m : 0.05	n : 0.03	a : 0.01	b : 0.01	d : 0.01	f : 0.01	l : 0.01	
o : 0.72	m : 0.12	n : 0.05	l : 0.03	c : 0.03	f : 0.01	
o : 0.72	m : 0.12	l : 0.09	n : 0.05	
o : 0.72	m : 0.12	l : 0.07	n : 0.05	d : 0.01	
o : 0.67	d : 0.10	m : 0.07	n : 0.05	l : 0.05	a : 0.03	
o : 0.65	c : 0.14	d : 0.10	] : 0.03	a : 0.01	n : 0.01	f : 0.01	
b : 0.32	c : 0.23	d : 0.16	e : 0.10	g : 0.05	f : 0.05	] : 0.01	o : 0.01	= : 0.01	
b : 0.34	c : 0.23	d : 0.14	e : 0.10	g : 0.05	f : 0.05	a : 0.01	= : 0.01	3 : 0.01	
2 : 0.30	] : 0.14	3 : 0.12	e : 0.10	c : 0.09	g : 0.05	f : 0.05	d : 0.05	b : 0.03	= : 0.01	
2 : 0.30	3 : 0.12	c : 0.10	e : 0.10	g : 0.07	] : 0.07	d : 0.07	f : 0.05	b : 0.05	= : 0.01	
c : 0.32	e : 0.12	b : 0.10	f : 0.10	3 : 0.10	g : 0.09	d : 0.05	a : 0.01	= : 0.01	2 : 0.01	6 : 0.01	
c : 0.34	b : 0.14	f : 0.10	g : 0.09	3 : 0.07	d : 0.05	4 : 0.05	e : 0.03	2 : 0.03	= : 0.01	a : 0.01	6 : 0.01	
c : 0.25	] : 0.12	g : 0.09	2 : 0.09	3 : 0.09	b : 0.07	4 : 0.07	f : 0.07	d : 0.05	e : 0.03	= : 0.01	6 : 0.01	
] : 0.20	c : 0.12	4 : 0.12	2 : 0.10	3 : 0.10	e : 0.09	f : 0.07	d : 0.05	6 : 0.03	g : 0.03	b : 0.01	= : 0.01	
c : 0.29	4 : 0.14	e : 0.12	f : 0.09	a : 0.07	b : 0.05	d : 0.05	2 : 0.03	6 : 0.03	3 : 0.03	g : 0.03	= : 0.01	
c : 0.30	e : 0.14	f : 0.10	4 : 0.09	] : 0.07	d : 0.07	2 : 0.03	6 : 0.03	b : 0.03	g : 0.03	3 : 0.01	> : 0.01	= : 0.01	
c : 0.23	e : 0.18	4 : 0.14	d : 0.10	] : 0.07	f : 0.07	b : 0.05	2 : 0.03	6 : 0.01	5 : 0.01	> : 0.01	= : 0.01	g : 0.01	

#score	683.2281581031436
#seq	55
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF469SRC_SAFB_transcript_m1_run1.txt

#BEAR
iiiiiiiii[bbssssssssssbb]iiiiiiii	chr6:1907070-1907344(-)$1	274	206	239	17.8148
ddd[bb!!ddddtttttttttttdddd]bbddd	chr11:65267726-65267948(+)$1	222	110	143	22.9396
cc!!cccddddvvvvvvvvvvvvvdddd]ccc2	chr8:13071909-13072162(-)$1	253	142	175	22.2686
:bb[eeeeeyyyyyyyyyyyyyyyyeeeee]bb	chr7:157943415-157943703(-)$1	288	47	80	18.3174
eeeeee[cccvvvvvvvvvvvvvccc]eeeee2	chrX:20270983-20271285(-)$1	302	84	117	21.7057
d"""bb[dddduuuuuuuuuuuudddd]bb444	chr2:63060565-63060811(+)$1	246	103	136	23.8992
"""bb!!eeeeesssssssssseeeeebb]eee	chr20:17636148-17636413(-)$1	265	27	60	18.5536
eeee[eeeeewwwwwwwwwwwwwweeeee]eee	chr10:125793860-125794121(-)$1	261	38	71	21.7903
f!!bb!!eeeeewwwwwwwwwwwwwweeeee22	chr11:65267476-65267688(+)$1	212	95	128	22.8325
iiiii"""bbvvvvvvvvvvvvvbb4444iiii	chr3:197243898-197244182(-)$1	284	146	179	21.7618
f!!bb!!eeeeewwwwwwwwwwwwwweeeee22	chr11:65267465-65267676(+)$1	211	106	139	22.8325
gggggg!!ddddssssssssssdddd333gggg	chr17:166811-167096(-)$1	285	208	241	18.9860
!iiiiiiiiiwwwwwwwwwwwwwwiiiiiiiii	chr19:23507354-23507642(-)$1	288	134	167	22.3993
iii####eeeeeuuuuuuuuuuuueeeee22ii	chr5:95296418-95296742(-)$1	324	267	300	24.1094
[eeeee[ffffffssssssssssffffff4444	chr16:89547133-89547430(-)$1	297	24	57	17.4294
eee[eeeee[cccssssssssssccceeeee22	chr1:234544223-234544553(-)$1	330	160	193	18.7530
dd"""dddd[cccssssssssssccc333dddd	chr17:164082-164327(-)$1	245	46	79	18.8592
eee"""fffffftttttttttttffffff22ee	chr1:78098338-78098678(-)$1	340	5	38	21.9502
eee"""bb[ddddssssssssssdddd333bb2	chr3:195418848-195419136(+)$1	288	216	249	18.2356
ddd[ffffff[bbssssssssssbb]ffffffd	chr2:75779151-75779417(-)$1	266	33	66	16.3866
ddd[bb[eeeeettttttttttteeeee]bb]d	chr2:42426282-42426550(+)$1	268	65	98	23.4639
cccbb!!eeeeettttttttttteeeee22bb:	chr6:167358205-167358464(-)$1	259	176	209	22.1575
eeeeeggggggguuuuuuuuuuuuggggggg::	chr4:89694038-89694333(-)$1	295	94	127	20.7286
$$$dddd[ddddtttttttttttdddd]ddddg	chr5:145868544-145868857(+)$1	313	219	252	21.5731
gggggg[eeeeettttttttttteeeeeggggg	chr2:63060351-63060611(+)$1	260	167	200	23.4606
dd:iiiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr2:36627396-36627724(+)$1	328	273	306	22.1735
dddd"""eeeeexxxxxxxxxxxxxxxeeeee2	chr11:2719215-2719480(-)$1	265	136	169	17.9364
::ccc"""ddddtttttttttttdddd333ccc	chr6:129859228-129859574(-)$1	346	160	193	22.0678
cc"""ccc[ccctttttttttttccc]ccc22c	chrX:20268830-20269092(-)$1	262	206	239	23.5583
ddd"""gggggggssssssssssggggggg333	chr11:95982980-95983265(-)$1	285	210	243	18.7275
dddd"""eeeeettttttttttteeeee333dd	chr5:27493233-27493478(+)$1	245	134	167	24.0722
a[a[bb[a!!bbssssssssssbb4444a]bb]	chr7:157943587-157943876(-)$1	289	53	86	18.2349
FFeeeee[ddddtttttttttttdddd]eeeee	chr7:158280267-158280535(-)$1	268	198	231	21.2572
e"""dddd!!bbtttttttttttbb22dddd22	chr17:165161-165461(-)$1	300	26	59	21.6679
iiiii"""bbvvvvvvvvvvvvvbb4444iiii	chr3:197243757-197244098(-)$1	341	62	95	21.7618
d"""bb[dddduuuuuuuuuuuudddd]bb444	chr2:63060611-63060841(+)$1	230	57	90	23.8992
a!!ccc!!cccuuuuuuuuuuuuccc22ccc22	chr1:2324762-2325066(+)$1	304	49	82	24.0998
cc!!cccddddvvvvvvvvvvvvvdddd]ccc2	chr8:13071857-13072109(-)$1	252	89	122	22.2686
c!!bb[fffffftttttttttttffffffbb]c	chr22:51147618-51147934(+)$1	316	71	104	21.8038
eeee]bbeeeeettttttttttteeeee::ggg	chr13:98882682-98882941(+)$1	259	78	111	20.4368
[ccc[a[bb!!auuuuuuuuuuuua22bb]a]c	chr6:167358264-167358513(-)$1	249	41	74	22.4866
ggggg!!ddddwwwwwwwwwwwwwwdddd]ggg	chr15:43432214-43432522(+)$1	308	49	82	22.4882
ccc[bbffffffssssssssssffffff]bb]c	chr20:8197503-8197780(+)$1	277	97	130	17.0384
ccc[hhhhhhhhvvvvvvvvvvvvvhhhhhhhh	chr4:89698625-89698917(-)$1	292	74	107	18.6249
::ddddddddvvvvvvvvvvvvvdddd333ddd	chr8:123831774-123832052(+)$1	278	57	90	19.4432
!!dddd[cccxxxxxxxxxxxxxxxccc333dd	chr8:9629646-9629922(+)$1	276	16	49	18.3465
ddd[bb!!cccuuuuuuuuuuuuccc]bbdddd	chr1:94063403-94063650(+)$1	247	71	104	23.1768
!!dddd[cccxxxxxxxxxxxxxxxccc333dd	chr8:9629524-9629813(+)$1	289	138	171	18.3465
dd!!bb[ccccccssssssssssccc]ccc22b	chr2:238490641-238490921(-)$1	280	72	105	19.0495
""ffffff[cccsssssssssscccffffff33	chr4:152182293-152182620(-)$1	327	132	165	17.7464
f!!bb!!eeeeewwwwwwwwwwwwwweeeee22	chr11:65267488-65267707(+)$1	219	83	116	22.8325
:dddd####cccssssssssssccc4444dddd	chr19:56152582-56152893(+)$1	311	85	118	17.6332

#otherMatches

#Seq PSSM
CAUUUCCUGCUAUGUAAAGUGUUAUUAGGGAAU	chr6:1907070-1907344(-)$1	274	206	239	17.8148
CUGAGGACUAGCAUUAAUUGACAGCUGACCCAG	chr11:65267726-65267948(+)$1	222	110	143	22.9396
AUGCCAGUUUCACCAAUGAUAAGAGAAACCUGA	chr8:13071909-13072162(-)$1	253	142	175	22.2686
AGGGUGGGAUGCACAGAAUAAUAUUUCCCAGCU	chr7:157943415-157943703(-)$1	288	47	80	18.3174
uuuucccucauuccacuucaagcugaaggaagu	chrX:20270983-20271285(-)$1	302	84	117	21.7057
uuuacugaauauuuuaagaccauuguugagacc	chr2:63060565-63060811(+)$1	246	103	136	23.8992
aaagcaauuuugugaaauguaucaagagccuca	chr20:17636148-17636413(-)$1	265	27	60	18.5536
AGGGUCCCUGUUAGGGGAUGAAGCCAGGGUCCC	chr10:125793860-125794121(-)$1	261	38	71	21.7903
GAACCAAUUUAGAAGAAUACUUGAAGCUAGAAG	chr11:65267476-65267688(+)$1	212	95	128	22.8325
GGAGUGAGUGAGACAAACAGACCCAGGAGGCUU	chr3:197243898-197244182(-)$1	284	146	179	21.7618
GAACCAAUUUAGAAGAAUACUUGAAGCUAGAAG	chr11:65267465-65267676(+)$1	211	106	139	22.8325
CACUGGAGGUGGAGCACAGAGACUACAGGUCAG	chr17:166811-167096(-)$1	285	208	241	18.9860
acucgggagggugaggugagaggaucucuugag	chr19:23507354-23507642(-)$1	288	134	167	22.3993
GAGAGACCUGAGGACUCACGCACACUUAGCGCU	chr5:95296418-95296742(-)$1	324	267	300	24.1094
GUGUCACUCUCCAUUCUCUGCCCUGGGGACAUU	chr16:89547133-89547430(-)$1	297	24	57	17.4294
cacgagaucagaugagccaguuaaucgaucugg	chr1:234544223-234544553(-)$1	330	160	193	18.7530
CUACAGGUCAAUGGAGGUGGGGGCAUAGAGACU	chr17:164082-164327(-)$1	245	46	79	18.8592
CUUAGAUCUGAAGCACCAAACAGUUCAGAAGAA	chr1:78098338-78098678(-)$1	340	5	38	21.9502
agcaccgAUGCAGACCUUUGCAACUGCCCCUCA	chr3:195418848-195419136(+)$1	288	216	249	18.2356
gauguuuucuagguuugacauucccgagaaaag	chr2:75779151-75779417(-)$1	266	33	66	16.3866
UGAGUAAUUGUUGUGGGUAAUAAAGCGAGUGGU	chr2:42426282-42426550(+)$1	268	65	98	23.4639
CCUGCAGCUGGGAAAGGCGGAAACCCAGGAGUG	chr6:167358205-167358464(-)$1	259	176	209	22.1575
auCACUUUGAUGUAAAGACCAUCUCAUCAAGAA	chr4:89694038-89694333(-)$1	295	94	127	20.7286
guuuuuccaacacaaaugauaaauguuugagau	chr5:145868544-145868857(+)$1	313	219	252	21.5731
uuuccauguagacaauacagccuucuauuggaa	chr2:63060351-63060611(+)$1	260	167	200	23.4606
guuuuauuuuuuaaaggggaaaaggaagaauga	chr2:36627396-36627724(+)$1	328	273	306	22.1735
caagagccugauacacagccuuacucagucagu	chr11:2719215-2719480(-)$1	265	136	169	17.9364
UCACAUAUUCACGAAACACAACAGUGACCCUGU	chr6:129859228-129859574(-)$1	346	160	193	22.0678
caaaacaaaucuaacaacauauaagaauugcau	chrX:20268830-20269092(-)$1	262	206	239	23.5583
ucuaaguaagacaggcagcaaaguguuuuaagc	chr11:95982980-95983265(-)$1	285	210	243	18.7275
cuacauguuggucacauuucucuaccaaauggu	chr5:27493233-27493478(+)$1	245	134	167	24.0722
ggcggugugggcagggguaggagcagaaaggcg	chr7:157943587-157943876(-)$1	289	53	86	18.2349
CCAGCCGCAGGGucucuuucucucccucuggcu	chr7:158280267-158280535(-)$1	268	198	231	21.2572
UACAGGUCAGUGGAGGUGGAGUACAGGGACUAG	chr17:165161-165461(-)$1	300	26	59	21.6679
GGAGUGAGUGAGACAAACAGACCCAGGAGGCUU	chr3:197243757-197244098(-)$1	341	62	95	21.7618
uuuacugaauauuuuaagaccauuguugagacc	chr2:63060611-63060841(+)$1	230	57	90	23.8992
uacacaaaauaaaaauagggugaugugauguaa	chr1:2324762-2325066(+)$1	304	49	82	24.0998
AUGCCAGUUUCACCAAUGAUAAGAGAAACCUGA	chr8:13071857-13072109(-)$1	252	89	122	22.2686
caaaguguggagucaaaauucuuuuccaccuag	chr22:51147618-51147934(+)$1	316	71	104	21.8038
uaagugacucugguuaaugucagcagagaagug	chr13:98882682-98882941(+)$1	259	78	111	20.4368
acagguguggacgugggugggugagggcagggc	chr6:167358264-167358513(-)$1	249	41	74	22.4866
cagcugauUUUUUUUUGUUGUUGUUGAGAAAGU	chr15:43432214-43432522(+)$1	308	49	82	22.4882
UACCAGGGACAUUCUCCCAAAUGUGUCCUCUUG	chr20:8197503-8197780(+)$1	277	97	130	17.0384
GAUGUAGAUCUGGAAAAGUGUCUUACAGAUUUG	chr4:89698625-89698917(-)$1	292	74	107	18.6249
CAGGCACUAUCCAAGAAACCAAAGUAGAAUUGC	chr8:123831774-123832052(+)$1	278	57	90	19.4432
uauuagaccaggcaagaauuauuaauggaugcu	chr8:9629646-9629922(+)$1	276	16	49	18.3465
CCAAGAAAUCAUAAAUAUCACUCUGAAUCUGGA	chr1:94063403-94063650(+)$1	247	71	104	23.1768
uauuagaccaggcaagaauuauuaauggaugcu	chr8:9629524-9629813(+)$1	289	138	171	18.3465
GGAAGCAGAGCCAGAAAGGGACAUGGACUCGAG	chr2:238490641-238490921(-)$1	280	72	105	19.0495
AUUUUGGAGUCUGCACAACCAAAGAUCUGAGCC	chr4:152182293-152182620(-)$1	327	132	165	17.7464
GAACCAAUUUAGAAGAAUACUUGAAGCUAGAAG	chr11:65267488-65267707(+)$1	219	83	116	22.8325
GGGCGGAGGGACGGGAGGGGAAGUCGAGGCGCC	chr19:56152582-56152893(+)$1	311	85	118	17.6332

#DB
(((((((((.((..........)).))))))))	chr6:1907070-1907344(-)$1	1	206	239	17.8148
(((.((..((((...........)))).)))))	chr11:65267726-65267948(+)$1	1	110	143	22.9396
((..(((((((.............)))).))).	chr8:13071909-13072162(-)$1	1	142	175	22.2686
.((.(((((................))))).))	chr7:157943415-157943703(-)$1	1	47	80	18.3174
((((((.(((.............))).))))).	chrX:20270983-20271285(-)$1	1	84	117	21.7057
(...((.((((............)))).))...	chr2:63060565-63060811(+)$1	1	103	136	23.8992
...((..(((((..........))))))).)))	chr20:17636148-17636413(-)$1	1	27	60	18.5536
((((.(((((..............))))).)))	chr10:125793860-125794121(-)$1	1	38	71	21.7903
(..((..(((((..............)))))..	chr11:65267476-65267688(+)$1	1	95	128	22.8325
(((((...((.............))....))))	chr3:197243898-197244182(-)$1	1	146	179	21.7618
(..((..(((((..............)))))..	chr11:65267465-65267676(+)$1	1	106	139	22.8325
((((((..((((..........))))...))))	chr17:166811-167096(-)$1	1	208	241	18.9860
.(((((((((..............)))))))))	chr19:23507354-23507642(-)$1	1	134	167	22.3993
(((....(((((............)))))..))	chr5:95296418-95296742(-)$1	1	267	300	24.1094
.(((((.((((((..........))))))....	chr16:89547133-89547430(-)$1	1	24	57	17.4294
(((.(((((.(((..........))))))))..	chr1:234544223-234544553(-)$1	1	160	193	18.7530
((...((((.(((..........)))...))))	chr17:164082-164327(-)$1	1	46	79	18.8592
(((...((((((...........))))))..))	chr1:78098338-78098678(-)$1	1	5	38	21.9502
(((...((.((((..........))))...)).	chr3:195418848-195419136(+)$1	1	216	249	18.2356
(((.((((((.((..........)).)))))))	chr2:75779151-75779417(-)$1	1	33	66	16.3866
(((.((.(((((...........))))).)).)	chr2:42426282-42426550(+)$1	1	65	98	23.4639
)))((..(((((...........)))))..)).	chr6:167358205-167358464(-)$1	1	176	209	22.1575
)))))(((((((............)))))))..	chr4:89694038-89694333(-)$1	1	94	127	20.7286
...((((.((((...........)))).)))))	chr5:145868544-145868857(+)$1	1	219	252	21.5731
((((((.(((((...........))))))))))	chr2:63060351-63060611(+)$1	1	167	200	23.4606
)).(((((((((............)))))))))	chr2:36627396-36627724(+)$1	1	273	306	22.1735
((((...(((((...............))))).	chr11:2719215-2719480(-)$1	1	136	169	17.9364
..(((...((((...........))))...)))	chr6:129859228-129859574(-)$1	1	160	193	22.0678
((...(((.(((...........))).)))..)	chrX:20268830-20269092(-)$1	1	206	239	23.5583
(((...(((((((..........)))))))...	chr11:95982980-95983265(-)$1	1	210	243	18.7275
((((...(((((...........)))))...))	chr5:27493233-27493478(+)$1	1	134	167	24.0722
(.(.((.(..((..........))....).)).	chr7:157943587-157943876(-)$1	1	53	86	18.2349
))(((((.((((...........)))).)))))	chr7:158280267-158280535(-)$1	1	198	231	21.2572
(...((((..((...........))..))))..	chr17:165161-165461(-)$1	1	26	59	21.6679
(((((...((.............))....))))	chr3:197243757-197244098(-)$1	1	62	95	21.7618
(...((.((((............)))).))...	chr2:63060611-63060841(+)$1	1	57	90	23.8992
(..(((..(((............)))..)))..	chr1:2324762-2325066(+)$1	1	49	82	24.0998
((..(((((((.............)))).))).	chr8:13071857-13072109(-)$1	1	89	122	22.2686
(..((.((((((...........)))))))).)	chr22:51147618-51147934(+)$1	1	71	104	21.8038
)))).))(((((...........)))))..(((	chr13:98882682-98882941(+)$1	1	78	111	20.4368
.(((.(.((..(............)..)).).)	chr6:167358264-167358513(-)$1	1	41	74	22.4866
(((((..((((..............)))).)))	chr15:43432214-43432522(+)$1	1	49	82	22.4882
(((.((((((((..........)))))).)).)	chr20:8197503-8197780(+)$1	1	97	130	17.0384
(((.((((((((.............))))))))	chr4:89698625-89698917(-)$1	1	74	107	18.6249
..((((((((.............))))...)))	chr8:123831774-123832052(+)$1	1	57	90	19.4432
..((((.(((...............)))...))	chr8:9629646-9629922(+)$1	1	16	49	18.3465
(((.((..(((............))).))))))	chr1:94063403-94063650(+)$1	1	71	104	23.1768
..((((.(((...............)))...))	chr8:9629524-9629813(+)$1	1	138	171	18.3465
((..((.((((((..........))).)))..)	chr2:238490641-238490921(-)$1	1	72	105	19.0495
..((((((.(((..........)))))))))..	chr4:152182293-152182620(-)$1	1	132	165	17.7464
(..((..(((((..............)))))..	chr11:65267488-65267707(+)$1	1	83	116	22.8325
.((((....(((..........)))....))))	chr19:56152582-56152893(+)$1	1	85	118	17.6332

#PSSM
d : 0.23	e : 0.15	c : 0.13	i : 0.07	: : 0.07	f : 0.05	g : 0.05	! : 0.05	" : 0.03	[ : 0.03	a : 0.03	$ : 0.01	F : 0.01	
d : 0.21	e : 0.15	c : 0.13	! : 0.13	i : 0.09	" : 0.09	g : 0.05	: : 0.03	b : 0.01	$ : 0.01	[ : 0.01	F : 0.01	
d : 0.21	e : 0.17	! : 0.15	" : 0.11	i : 0.09	c : 0.09	g : 0.05	b : 0.01	$ : 0.01	: : 0.01	a : 0.01	f : 0.01	
[ : 0.17	" : 0.15	d : 0.13	e : 0.11	b : 0.11	i : 0.09	! : 0.05	g : 0.05	c : 0.05	# : 0.01	f : 0.01	
b : 0.26	" : 0.13	e : 0.11	d : 0.11	i : 0.09	c : 0.07	g : 0.05	[ : 0.03	f : 0.03	# : 0.01	] : 0.01	h : 0.01	
b : 0.17	" : 0.15	e : 0.11	! : 0.11	d : 0.11	c : 0.07	i : 0.05	g : 0.05	# : 0.03	f : 0.03	[ : 0.01	a : 0.01	h : 0.01	
[ : 0.21	! : 0.19	" : 0.09	f : 0.09	e : 0.07	d : 0.07	i : 0.05	c : 0.05	# : 0.03	b : 0.03	g : 0.03	h : 0.01	
e : 0.26	d : 0.15	f : 0.11	c : 0.09	! : 0.07	i : 0.05	" : 0.05	b : 0.03	g : 0.03	[ : 0.03	a : 0.01	h : 0.01	# : 0.01	
e : 0.26	d : 0.23	c : 0.11	f : 0.09	i : 0.05	b : 0.05	[ : 0.05	g : 0.03	! : 0.03	h : 0.01	# : 0.01	
d : 0.23	e : 0.23	c : 0.17	f : 0.09	[ : 0.05	! : 0.05	b : 0.03	i : 0.03	g : 0.03	y : 0.01	h : 0.01	
d : 0.21	e : 0.21	c : 0.15	v : 0.07	f : 0.07	b : 0.05	w : 0.03	g : 0.03	x : 0.03	y : 0.01	[ : 0.01	i : 0.01	! : 0.01	h : 0.01	
e : 0.21	d : 0.11	v : 0.11	c : 0.11	b : 0.07	u : 0.07	f : 0.07	w : 0.05	g : 0.03	x : 0.03	y : 0.01	i : 0.01	a : 0.01	h : 0.01	
t : 0.24	u : 0.15	s : 0.13	v : 0.13	w : 0.11	c : 0.05	x : 0.05	y : 0.01	f : 0.01	d : 0.01	b : 0.01	g : 0.01	
s : 0.26	t : 0.24	u : 0.15	v : 0.13	w : 0.11	x : 0.05	y : 0.01	
s : 0.26	t : 0.24	u : 0.15	v : 0.13	w : 0.11	x : 0.05	y : 0.01	
s : 0.26	t : 0.24	u : 0.15	v : 0.13	w : 0.11	x : 0.05	y : 0.01	
s : 0.26	t : 0.24	u : 0.15	v : 0.13	w : 0.11	x : 0.05	y : 0.01	
s : 0.26	t : 0.24	u : 0.15	v : 0.13	w : 0.11	x : 0.05	y : 0.01	
s : 0.26	t : 0.24	u : 0.15	v : 0.13	w : 0.11	x : 0.05	y : 0.01	
s : 0.26	t : 0.24	u : 0.15	v : 0.13	w : 0.11	x : 0.05	y : 0.01	
s : 0.26	t : 0.24	u : 0.15	v : 0.13	w : 0.11	x : 0.05	y : 0.01	
s : 0.26	t : 0.24	u : 0.15	v : 0.13	w : 0.11	x : 0.05	y : 0.01	
t : 0.24	u : 0.15	v : 0.13	s : 0.13	w : 0.11	x : 0.05	b : 0.03	c : 0.03	y : 0.01	e : 0.01	d : 0.01	f : 0.01	
d : 0.17	c : 0.17	b : 0.11	e : 0.11	w : 0.11	u : 0.07	f : 0.07	v : 0.05	x : 0.05	y : 0.01	g : 0.01	
d : 0.21	c : 0.17	e : 0.15	w : 0.07	b : 0.07	f : 0.07	x : 0.05	i : 0.03	g : 0.03	] : 0.01	y : 0.01	4 : 0.01	a : 0.01	v : 0.01	
d : 0.23	e : 0.17	c : 0.17	f : 0.09	4 : 0.07	i : 0.05	w : 0.05	g : 0.03	2 : 0.03	] : 0.01	x : 0.01	h : 0.01	
e : 0.24	d : 0.21	f : 0.11	] : 0.07	4 : 0.07	i : 0.05	2 : 0.05	3 : 0.03	g : 0.03	c : 0.03	x : 0.01	h : 0.01	
e : 0.26	f : 0.11	] : 0.09	3 : 0.09	d : 0.07	4 : 0.07	c : 0.07	i : 0.05	b : 0.05	g : 0.03	2 : 0.01	h : 0.01	
e : 0.19	3 : 0.15	b : 0.11	f : 0.09	] : 0.07	i : 0.05	4 : 0.05	g : 0.05	d : 0.05	c : 0.05	2 : 0.01	a : 0.01	: : 0.01	h : 0.01	
e : 0.15	b : 0.11	3 : 0.11	i : 0.09	c : 0.09	] : 0.09	d : 0.09	g : 0.07	2 : 0.05	f : 0.03	4 : 0.01	: : 0.01	h : 0.01	
e : 0.17	d : 0.13	b : 0.11	i : 0.09	g : 0.09	c : 0.07	2 : 0.07	3 : 0.07	4 : 0.05	f : 0.03	] : 0.01	a : 0.01	h : 0.01	
d : 0.17	2 : 0.15	i : 0.11	e : 0.11	b : 0.07	g : 0.07	] : 0.07	c : 0.05	4 : 0.05	3 : 0.03	f : 0.01	: : 0.01	h : 0.01	
2 : 0.21	d : 0.19	i : 0.11	g : 0.09	c : 0.09	e : 0.07	4 : 0.05	b : 0.03	: : 0.03	3 : 0.03	] : 0.01	h : 0.01	

#score	1084.3891761669643
#seq	52
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_UTR_m3_run1.txt

#BEAR
===[dddd!!ccceeeeellleeeee333ccc22d	chr1:24972439-24972664(+)$1	225	156	191	11.1446
f####bb[ccc[a[cccmmmmccc333a]ccc]bb	chr11:108345520-108345780(-)$1	260	44	79	11.6237
ccc[a[ccc[ccc[ccclllccc22ccc]ccca]c	chr7:94919545-94919773(+)$1	228	85	120	11.9261
####eeeeeffffffooooooffffff]eeeeegg	chr5:65457959-65458205(+)$1	246	203	238	13.5436
ffff[a!!dddd[bboooooobb]dddd333a]ff	chr6:101295968-101296224(-)$1	256	205	240	13.4914
[ccc[ggggggg!!cccmmmmccc]ggggggg]cc	chr17:57776115-57776378(-)$1	263	137	172	12.5289
"""ccc[a!!a[cccooooooccc]a]a]ccc333	chr16:84216581-84216823(-)$1	242	185	220	17.3451
[ffffff[gggggggoooooogggggggffffff3	chr1:155650085-155650359(-)$1	274	93	128	14.4225
ffff[ggggggg[bboooooobb333gggggggff	chr8:91063804-91064068(+)$1	264	220	255	15.1423
[ccc!!ccc[a[cccooooooccc]a333ccc22c	chr16:22358813-22359157(-)$1	344	226	261	17.2230
bb!!dddd!!ccc!!aooooooa22ccc333dddd	chr10:22615326-22615622(+)$1	296	126	161	13.8579
ggggggiiiiiiiiiooooooiiiiiiiii:gggg	chr2:43779240-43779484(-)$1	244	163	198	15.1173
dddd[ccc[ffffffooooooffffff]ccc]ddd	chr12:103232854-103233096(-)$1	242	178	213	13.4112
##ggggggg"""cccooooooccc333ggggggg4	chr18:12785638-12785893(-)$1	255	157	192	17.0548
============!!cccmmmmccc===========	chr12:93226212-93226497(-)$1	285	195	230	13.0787
((eeeee[a[ccc[aooooooaccc]aeeeee22g	chr8:25209208-25209435(+)$1	227	130	165	13.7847
g"""gggggggddddoooooodddd333ggggggg	chr3:136287586-136287803(-)$1	217	31	66	15.3282
2cccbbeeeee[cccooooooccc]eeeeeeeeee	chr2:190332233-190332474(+)$1	241	108	143	13.2690
bb[iiiiiiiii[bboooooobbiiiiiiiii]bb	chr13:31711391-31711621(-)$1	230	84	119	15.0288
cc[eeeee####cccnnnnnccc4444eeeee]cc	chr16:53967831-53968182(+)$1	351	141	176	11.5472
!eeeee####eeeeeooooooeeeee333eeeee2	chr16:9000277-9000536(-)$1	259	17	52	14.5355
b[ccc####ffffffooooooffffff4444ccc]	chr2:9994368-9994619(+)$1	251	8	43	14.3791
bb[==============mmmm==============	chr2:153532975-153533227(-)$1	252	25	60	12.8955
ggggggg[cccccc[ccclllccc]ccc333cccg	chr17:73035204-73035416(-)$1	212	54	89	12.4337
c:ccc####gggggggooooooggggggg333ccc	chr4:76419208-76419474(-)$1	266	214	249	13.7110
gg####ddddeeeeeooooooeeeee]dddd22gg	chr5:96108327-96108627(+)$1	300	149	184	12.9412
ee[ffffff[ddddoooooodddd22ffffff]ee	chr10:93756209-93756426(+)$1	217	156	191	11.6440
dddd!!ddddbbcccooooooccc]bb]dddd444	chr5:32270825-32271057(-)$1	232	81	116	13.3801
ggdddd$$$$$ddddoooooodddd333dddd22g	chr2:135815522-135815769(+)$1	247	68	103	13.3678
hhhhhffffff[cccooooooccc]ffffff333h	chr3:184105644-184105921(+)$1	277	13	48	14.2664
=======ffffff[aooooooa]ffffff:ddddl	chr4:170506557-170506801(-)$1	244	105	140	12.4018
!!dddd####eeeeeooooooeeeee333dddd33	chr1:78177407-78177638(-)$1	231	26	61	14.9010
bbdddd[ffffffbboooooobb]ffffff]dddd	chr3:121415977-121416262(-)$1	285	176	211	12.3334
ff[dddd"""ggggggglllgggggggdddd333f	chr9:33258821-33259101(-)$1	280	226	261	11.0914
!!bbdddda[eeeeeooooooeeeee333a]dddd	chr4:185582898-185583150(+)$1	252	137	172	13.6619
hhhhhh####eeeeeooooooeeeee]hhhhhhhh	chr15:43348512-43348738(-)$1	226	147	182	12.1882
dddd[==========oooooo==========]ddd	chr13:41556284-41556518(-)$1	234	87	122	15.8083
ffffffiiiiiiiiiooooooiiiiiiiii66666	chr1:46072122-46072389(+)$1	267	13	48	13.1520
[dddd[ccc[ccc!!ccclllccc]ccc]ccc]dd	chr5:10264875-10265185(+)$1	310	157	192	11.8379
d[ggggggg"""ddddmmmmdddd333ggggggg]	chr2:238976614-238976925(+)$1	311	34	69	11.2948
e:==========cccooooooccc]==========	chr18:29470599-29470912(-)$1	313	199	234	16.3463
ddd!!cccgggggggooooooggggggg]ccc22d	chr17:45235470-45235722(-)$1	252	162	197	15.3908
eeeee####ccc[bboooooobb]ccceeeee]bb	chr3:49020531-49020771(+)$1	240	165	200	13.7977
ff"""eeeee!!cccooooooccc]eeeee333ff	chr6:20535480-20535712(+)$1	232	137	172	15.3046
c[ffffffgggggggooooooggggggg666666f	chr2:61715278-61715506(-)$1	228	167	202	12.2411
ee$$$$$ccc"""bboooooobb22ccc22eeeee	chr7:151853273-151853496(-)$1	223	106	141	12.8060
a[ffffff####cccoooooocccffffff]a]bb	chr5:884038-884286(-)$1	248	6	41	14.7505
ee!!eeeee!!a[cccmmmmccc]a333eeeee22	chr19:30503298-30503550(+)$1	252	19	54	11.1475
eeeee"""bb[ddddoooooodddd]bb333eeee	chr17:65118992-65119235(-)$1	243	164	199	13.0079
c####hhhhhhhhbboooooobb4444hhhhhhhh	chr2:128941164-128941391(+)$1	227	132	167	11.9945
ggggggg"""gggggggmmmmggggggg22ggggg	chr2:216913988-216914196(-)$1	208	111	146	11.8005
!ggggggg[bb[cccooooooccc]bb]ggggggg	chr12:57127840-57128078(-)$1	238	21	56	15.6184

#otherMatches

#Seq PSSM
UUAUAGCACACUUACUUGACUCAAGUUCUGGGGUU	chr1:24972439-24972664(+)$1	225	156	191	11.1446
AGUCAACAGAAUGCAGUGUGAACUAACCUUUCAGU	chr11:108345520-108345780(-)$1	260	44	79	11.6237
AGAUGAUGGAGAUGCUCCAAGAGAAGUCCCCACCU	chr7:94919545-94919773(+)$1	228	85	120	11.9261
UCAUAUCAGUGGAUACAGUAAUAUUUAUCUGAUUU	chr5:65457959-65458205(+)$1	246	203	238	13.5436
AGUUGAAAUGAUUUAUUUUUUUAUAUUAAUGUGAA	chr6:101295968-101296224(-)$1	256	205	240	13.4914
uaaauuaauggugaguacccauacaaccauuguuu	chr17:57776115-57776378(-)$1	263	137	172	12.5289
GUGGUGGGGAUGUAGGAGGUGCUAGGACGCACGUA	chr16:84216581-84216823(-)$1	242	185	220	17.3451
ACGUUUGGCUUUUUUGCAGAAAAGGAAGCAAAUGA	chr1:155650085-155650359(-)$1	274	93	128	14.4225
CAUGUAAAAAGGACAUUAAAUUGACAUCUUUUUUG	chr8:91063804-91064068(+)$1	264	220	255	15.1423
AGGUGCCUACCGAGCACGGGCGCUGGAACUAGAGG	chr16:22358813-22359157(-)$1	344	226	261	17.2230
CAUUGAUGCCACAACCAUAAUAGAAUGUCUACAUU	chr10:22615326-22615622(+)$1	296	126	161	13.8579
UCCUGUCUCAGAAAUCCAUUCAUUUCUGAGCUUUA	chr2:43779240-43779484(-)$1	244	163	198	15.1173
UCUGUUGAUGGAGAUCCAACUAUUUCUUUCAUCAG	chr12:103232854-103233096(-)$1	242	178	213	13.4112
AAGUGAGGCUCGCUAACCCUCUAGAUUGCCUCACA	chr18:12785638-12785893(-)$1	255	157	192	17.0548
AGUGAAAUUAAUCAAGUAAGAGCUGUUAAUUUUAU	chr12:93226212-93226497(-)$1	285	195	230	13.0787
CAUCGUGAGUAUCUCUUUGUUGGAUCCCACGGCCG	chr8:25209208-25209435(+)$1	227	130	165	13.7847
UUUUGAAAAUUUAUUUGCUAUAAUAUCAAAUUUUU	chr3:136287586-136287803(-)$1	217	31	66	15.3282
AUGUACAUUUUGCCAACGAGCUGGGAAAAUAAGGU	chr2:190332233-190332474(+)$1	241	108	143	13.2690
ACAAUUUUGGUGCUGAACCUCCACAUCAGAAUGGU	chr13:31711391-31711621(-)$1	230	84	119	15.0288
UUGCCUCGCUCACUGCACGCCAGAACCUGAGGAGA	chr16:53967831-53968182(+)$1	351	141	176	11.5472
UAAAUGGCCUUACUUACUGUAAAGUGUGAUAUUUU	chr16:9000277-9000536(-)$1	259	17	52	14.5355
AGAGCUGUGGUGUAGAUGUGCCUGUACAUUUGUUG	chr2:9994368-9994619(+)$1	251	8	43	14.3791
GCAGCUGCUGUUGUUgcagcagcagcagcggcagc	chr2:153532975-153533227(-)$1	252	25	60	12.8955
AAUCUUGUGCUGAGUGGGUGUCUCUCUCAAAGGCC	chr17:73035204-73035416(-)$1	212	54	89	12.4337
UAAGCUUAACUUCUAAUAUGUUUUGGAAGCAUGCU	chr4:76419208-76419474(-)$1	266	214	249	13.7110
UUUGUUAUUCUUUUCCAGAAAGAAAAUGAAUUUGA	chr5:96108327-96108627(+)$1	300	149	184	12.9412
UUCAUUUCACUUAAGGAUAAUUAAAAUGAAAUUGA	chr10:93756209-93756426(+)$1	217	156	191	11.6440
CUUCGAGUGUUCCAGUUUUGUCUGAGGUACACAAA	chr5:32270825-32271057(-)$1	232	81	116	13.3801
AAAGUUGAAGAAGUCUUGAAUGACUGGAAACUGAU	chr2:135815522-135815769(+)$1	247	68	103	13.3678
GAGUGGGCAGGAGGCUUAUGUGCCCCCUGCCUGAC	chr3:184105644-184105921(+)$1	277	13	48	14.2664
AAGCUGGCAGUAUGAAAAACCUGGUACUGAAGAUA	chr4:170506557-170506801(-)$1	244	105	140	12.4018
UAUUUGGCCACUGACUUAAAUGUUAGAAACAAACU	chr1:78177407-78177638(-)$1	231	26	61	14.9010
UCCAGGCUCUGGUCAAACAGAUGAAUCAGACCUUG	chr3:121415977-121416262(-)$1	285	176	211	12.3334
GCUUCCUGGAuauaacuugugguuauggggacaug	chr9:33258821-33259101(-)$1	280	226	261	11.0914
GAUGGUUGCAUUACUCAUUGAGGUAAAUGGCCAAC	chr4:185582898-185583150(+)$1	252	137	172	13.6619
GUAUCUCUAUAACUGCACUUUCAGUUCAGAUGUUU	chr15:43348512-43348738(-)$1	226	147	182	12.1882
UUUUGUUUUUUAGGCCAAGAAGCUUGAGAGAAGAA	chr13:41556284-41556518(-)$1	234	87	122	15.8083
UUUCUUUUGUUCUCCUAGAAUGGAGAAUGGUGUGU	chr1:46072122-46072389(+)$1	267	13	48	13.1520
ACCAUAGUUUCACUUGUUCAAAGCUGUGUAAUCGU	chr5:10264875-10265185(+)$1	310	157	192	11.8379
UGCGUUGAUUGAGCUUGGUGAAGCAAUGUUAAUGA	chr2:238976614-238976925(+)$1	311	34	69	11.2948
UAGUAAAGCAGGGCAGGUGAGUGCAUUUGCUUUAC	chr18:29470599-29470912(-)$1	313	199	234	16.3463
GGGUUGAGAGGUGGGUGGGUUCCCAUCUCCUCUUC	chr17:45235470-45235722(-)$1	252	162	197	15.3908
CACCUAAGUUGGGAUGUGGAUGUGCCGGGGUGAGG	chr3:49020531-49020771(+)$1	240	165	200	13.7977
UAAUUAAGGUACUGAUUUAUUUUAAACCUUUUAUG	chr6:20535480-20535712(+)$1	232	137	172	15.3046
AAUAUCUGGUUGGGUGAGCCGAUCCAAUGAUCCAC	chr2:61715278-61715506(-)$1	228	167	202	12.2411
UCCUCCUACACCACCUCCUAUGGCUUGUCAGAAGA	chr7:151853273-151853496(-)$1	223	106	141	12.8060
GGGUCGGUAGAAGCUGGGUUAGGUGCCGACGCAUG	chr5:884038-884286(-)$1	248	6	41	14.7505
GGGAGUUUUGAGGAGUAUCAGCUGCGAAGAAGCCA	chr19:30503298-30503550(+)$1	252	19	54	11.1475
GAAAUACUUUCUAUUGAAUCAAGUAAAAUAGGUUU	chr17:65118992-65119235(-)$1	243	164	199	13.0079
UGACAGACUCAGGGGACAGUACCAAGGUCUGAGUC	chr2:128941164-128941391(+)$1	227	132	167	11.9945
UUCCCAGACUGCUGUGGAGAACUAUGGUUCCUGGG	chr2:216913988-216914196(-)$1	208	111	146	11.8005
AUUAUAAUGUACAUUCUUCAUAAUUUAGAUUAUAA	chr12:57127840-57128078(-)$1	238	21	56	15.6184

#DB
(((.((((..((((((((...)))))...)))..)	chr1:24972439-24972664(+)$1	1	156	191	11.1446
(....((.(((.(.(((....)))...).))).))	chr11:108345520-108345780(-)$1	1	44	79	11.6237
(((.(.(((.(((.(((...)))..))).)))).)	chr7:94919545-94919773(+)$1	1	85	120	11.9261
....(((((((((((......)))))).)))))))	chr5:65457959-65458205(+)$1	1	203	238	13.5436
((((.(..((((.((......)).))))...).))	chr6:101295968-101296224(-)$1	1	205	240	13.4914
.(((.(((((((..(((....))).))))))).))	chr17:57776115-57776378(-)$1	1	137	172	12.5289
...(((.(..(.(((......))).).).)))...	chr16:84216581-84216823(-)$1	1	185	220	17.3451
.((((((.(((((((......))))))))))))).	chr1:155650085-155650359(-)$1	1	93	128	14.4225
((((.(((((((.((......))...)))))))))	chr8:91063804-91064068(+)$1	1	220	255	15.1423
.(((..(((.(.(((......))).)...)))..)	chr16:22358813-22359157(-)$1	1	226	261	17.2230
((..((((..(((..(......)..)))...))))	chr10:22615326-22615622(+)$1	1	126	161	13.8579
))))))(((((((((......))))))))).((((	chr2:43779240-43779484(-)$1	1	163	198	15.1173
((((.(((.((((((......)))))).))).)))	chr12:103232854-103233096(-)$1	1	178	213	13.4112
..(((((((...(((......)))...))))))).	chr18:12785638-12785893(-)$1	1	157	192	17.0548
((((((((((((..(((....))))))))))))))	chr12:93226212-93226497(-)$1	1	195	230	13.0787
..(((((.(.(((.(......)))).))))))..)	chr8:25209208-25209435(+)$1	1	130	165	13.7847
(...(((((((((((......))))...)))))))	chr3:136287586-136287803(-)$1	1	31	66	15.3282
.)))))(((((.(((......))).)))))(((((	chr2:190332233-190332474(+)$1	1	108	143	13.2690
((.(((((((((.((......))))))))))).))	chr13:31711391-31711621(-)$1	1	84	119	15.0288
((.(((((....(((.....)))....))))).))	chr16:53967831-53968182(+)$1	1	141	176	11.5472
.(((((....(((((......)))))...))))).	chr16:9000277-9000536(-)$1	1	17	52	14.5355
(.(((....((((((......))))))....))).	chr2:9994368-9994619(+)$1	1	8	43	14.3791
((.((((((((((((((....))))))))))))))	chr2:153532975-153533227(-)$1	1	25	60	12.8955
(((((((.((((((.(((...))).)))...))))	chr17:73035204-73035416(-)$1	1	54	89	12.4337
).(((....(((((((......)))))))...)))	chr4:76419208-76419474(-)$1	1	214	249	13.7110
((....(((((((((......))))).))))..))	chr5:96108327-96108627(+)$1	1	149	184	12.9412
((.((((((.((((......))))..)))))).))	chr10:93756209-93756426(+)$1	1	156	191	11.6440
((((..(((((((((......))).)).))))...	chr5:32270825-32271057(-)$1	1	81	116	13.3801
((((((.....((((......))))...))))..)	chr2:135815522-135815769(+)$1	1	68	103	13.3678
(((((((((((.(((......))).))))))...)	chr3:184105644-184105921(+)$1	1	13	48	14.2664
)))))))((((((.(......).)))))).((((.	chr4:170506557-170506801(-)$1	1	105	140	12.4018
..((((....(((((......)))))...))))..	chr1:78177407-78177638(-)$1	1	26	61	14.9010
((((((.((((((((......)).)))))).))))	chr3:121415977-121416262(-)$1	1	176	211	12.3334
((.((((...(((((((...)))))))))))...)	chr9:33258821-33259101(-)$1	1	226	261	11.0914
..(((((((.(((((......)))))...).))))	chr4:185582898-185583150(+)$1	1	137	172	13.6619
((((((....(((((......))))).))))))))	chr15:43348512-43348738(-)$1	1	147	182	12.1882
((((.((((((((((......)))))))))).)))	chr13:41556284-41556518(-)$1	1	87	122	15.8083
(((((((((((((((......))))))))).....	chr1:46072122-46072389(+)$1	1	13	48	13.1520
.((((.(((.(((..(((...))).))).))).))	chr5:10264875-10265185(+)$1	1	157	192	11.8379
(.(((((((...((((....))))...))))))).	chr2:238976614-238976925(+)$1	1	34	69	11.2948
).(((((((((((((......))).))))))))))	chr18:29470599-29470912(-)$1	1	199	234	16.3463
(((..((((((((((......))))))).)))..)	chr17:45235470-45235722(-)$1	1	162	197	15.3908
(((((....(((.((......)).)))))))).))	chr3:49020531-49020771(+)$1	1	165	200	13.7977
((...(((((..(((......))).)))))...))	chr6:20535480-20535712(+)$1	1	137	172	15.3046
(.(((((((((((((......)))))))......)	chr2:61715278-61715506(-)$1	1	167	202	12.2411
((.....(((...((......))..)))..)))))	chr7:151853273-151853496(-)$1	1	106	141	12.8060
(.((((((....(((......))))))))).).))	chr5:884038-884286(-)$1	1	6	41	14.7505
((..(((((..(.(((....))).)...)))))..	chr19:30503298-30503550(+)$1	1	19	54	11.1475
(((((...((.((((......)))).))...))))	chr17:65118992-65119235(-)$1	1	164	199	13.0079
(....((((((((((......))....))))))))	chr2:128941164-128941391(+)$1	1	132	167	11.9945
(((((((...(((((((....)))))))..)))))	chr2:216913988-216914196(-)$1	1	111	146	11.8005
.(((((((.((.(((......))).)).)))))))	chr12:57127840-57128078(-)$1	1	21	56	15.6184

#PSSM
f : 0.11	g : 0.11	e : 0.11	c : 0.09	b : 0.09	d : 0.09	[ : 0.07	! : 0.07	= : 0.05	# : 0.03	h : 0.03	" : 0.01	( : 0.01	2 : 0.01	a : 0.01	
f : 0.11	g : 0.11	e : 0.11	c : 0.09	d : 0.09	# : 0.07	b : 0.07	[ : 0.07	= : 0.05	" : 0.03	: : 0.03	h : 0.03	! : 0.03	( : 0.01	
d : 0.15	c : 0.11	f : 0.11	g : 0.11	[ : 0.09	= : 0.07	# : 0.07	e : 0.07	" : 0.05	! : 0.03	h : 0.03	b : 0.01	$ : 0.01	
d : 0.15	f : 0.13	c : 0.11	g : 0.11	e : 0.09	# : 0.07	= : 0.07	! : 0.05	[ : 0.03	" : 0.03	h : 0.03	i : 0.01	b : 0.01	$ : 0.01	
d : 0.15	e : 0.13	g : 0.13	[ : 0.09	f : 0.09	= : 0.07	# : 0.05	c : 0.05	! : 0.05	h : 0.03	a : 0.01	b : 0.01	i : 0.01	" : 0.01	$ : 0.01	
g : 0.17	d : 0.13	e : 0.11	f : 0.11	= : 0.09	# : 0.07	c : 0.05	b : 0.03	[ : 0.03	! : 0.03	h : 0.03	a : 0.01	i : 0.01	$ : 0.01	" : 0.01	
g : 0.15	d : 0.11	e : 0.11	# : 0.11	c : 0.09	f : 0.09	= : 0.09	i : 0.05	[ : 0.03	$ : 0.03	b : 0.01	! : 0.01	" : 0.01	h : 0.01	
c : 0.11	g : 0.11	# : 0.11	f : 0.11	d : 0.09	e : 0.09	[ : 0.07	= : 0.07	i : 0.05	" : 0.05	! : 0.01	a : 0.01	$ : 0.01	h : 0.01	
g : 0.15	# : 0.15	c : 0.11	e : 0.07	= : 0.07	f : 0.07	! : 0.05	d : 0.05	i : 0.05	[ : 0.03	a : 0.03	" : 0.03	$ : 0.01	b : 0.01	h : 0.01	
g : 0.13	[ : 0.11	f : 0.11	# : 0.09	! : 0.07	c : 0.07	" : 0.07	= : 0.07	d : 0.05	i : 0.05	e : 0.03	b : 0.03	$ : 0.01	h : 0.01	
g : 0.17	c : 0.15	f : 0.11	e : 0.11	= : 0.07	i : 0.05	" : 0.05	d : 0.03	a : 0.03	# : 0.03	b : 0.03	! : 0.03	$ : 0.01	[ : 0.01	h : 0.01	
g : 0.15	c : 0.13	[ : 0.11	f : 0.09	d : 0.09	e : 0.09	= : 0.07	i : 0.05	" : 0.05	# : 0.03	b : 0.01	! : 0.01	a : 0.01	h : 0.01	
c : 0.32	g : 0.11	f : 0.09	[ : 0.09	d : 0.09	e : 0.09	! : 0.03	i : 0.03	= : 0.03	a : 0.01	" : 0.01	h : 0.01	
c : 0.24	b : 0.13	e : 0.11	g : 0.11	d : 0.09	[ : 0.07	! : 0.07	f : 0.05	i : 0.03	= : 0.03	
c : 0.30	b : 0.13	e : 0.11	g : 0.11	d : 0.07	f : 0.05	! : 0.03	i : 0.03	a : 0.03	= : 0.03	[ : 0.01	o : 0.01	
o : 0.71	c : 0.13	g : 0.05	e : 0.01	a : 0.01	n : 0.01	= : 0.01	d : 0.01	
o : 0.75	c : 0.11	g : 0.03	m : 0.03	e : 0.01	n : 0.01	= : 0.01	
o : 0.75	m : 0.13	l : 0.03	c : 0.03	e : 0.01	n : 0.01	
o : 0.75	m : 0.13	l : 0.09	n : 0.01	
o : 0.75	m : 0.13	l : 0.09	n : 0.01	
o : 0.73	m : 0.09	l : 0.05	c : 0.05	d : 0.03	g : 0.01	
c : 0.34	b : 0.13	e : 0.11	g : 0.09	d : 0.09	f : 0.05	o : 0.03	i : 0.03	a : 0.03	= : 0.03	
c : 0.36	b : 0.13	e : 0.11	g : 0.11	d : 0.09	f : 0.05	i : 0.03	= : 0.03	a : 0.01	] : 0.01	
c : 0.30	e : 0.11	g : 0.11	d : 0.09	f : 0.07	] : 0.07	2 : 0.05	i : 0.05	4 : 0.03	= : 0.03	3 : 0.01	
] : 0.21	e : 0.11	f : 0.11	g : 0.11	3 : 0.07	2 : 0.07	d : 0.07	i : 0.05	= : 0.05	c : 0.03	4 : 0.03	a : 0.01	
e : 0.15	3 : 0.13	f : 0.13	g : 0.13	c : 0.11	= : 0.07	i : 0.05	a : 0.03	] : 0.03	4 : 0.03	b : 0.03	d : 0.01	2 : 0.01	
3 : 0.21	f : 0.15	g : 0.15	c : 0.11	= : 0.07	] : 0.05	i : 0.05	b : 0.05	e : 0.03	4 : 0.03	d : 0.01	a : 0.01	
g : 0.17	3 : 0.15	c : 0.09	e : 0.09	f : 0.09	] : 0.07	= : 0.07	d : 0.05	i : 0.05	a : 0.03	h : 0.03	4 : 0.01	b : 0.01	
3 : 0.17	e : 0.13	g : 0.13	f : 0.11	] : 0.09	= : 0.07	d : 0.07	i : 0.05	h : 0.03	2 : 0.03	c : 0.01	4 : 0.01	6 : 0.01	
c : 0.15	e : 0.15	g : 0.11	3 : 0.09	f : 0.09	d : 0.09	= : 0.07	i : 0.05	h : 0.03	2 : 0.03	4 : 0.01	: : 0.01	a : 0.01	6 : 0.01	
c : 0.15	e : 0.15	g : 0.13	3 : 0.11	d : 0.11	= : 0.07	f : 0.05	] : 0.05	h : 0.03	6 : 0.03	: : 0.01	i : 0.01	4 : 0.01	
c : 0.17	e : 0.17	g : 0.15	d : 0.13	3 : 0.07	= : 0.05	a : 0.03	f : 0.03	] : 0.03	h : 0.03	6 : 0.03	i : 0.01	2 : 0.01	
] : 0.17	g : 0.13	d : 0.13	2 : 0.11	e : 0.11	3 : 0.07	= : 0.05	c : 0.05	h : 0.03	6 : 0.03	a : 0.01	f : 0.01	4 : 0.01	
g : 0.15	d : 0.13	2 : 0.11	c : 0.09	e : 0.09	b : 0.07	f : 0.07	3 : 0.07	= : 0.05	h : 0.03	6 : 0.03	] : 0.01	4 : 0.01	
g : 0.17	d : 0.15	c : 0.09	f : 0.09	b : 0.07	e : 0.07	3 : 0.05	= : 0.05	h : 0.05	4 : 0.03	2 : 0.03	] : 0.03	l : 0.01	6 : 0.01	

#score	706.3021512726273
#seq	52
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_CDS_m2_run2.txt

#BEAR
=======[a[bb!!ddddllldddd22bb]a]====	chr1:226032884-226033155(-)$1	271	42	78	13.5723
ddd[ffffff"""cccnnnnncccffffff22dddd	chr4:85708708-85708968(-)$1	260	194	230	13.1172
)dddd[dddd####bbnnnnnbb4444dddd22ddd	chr17:64637372-64637657(+)$1	285	195	231	12.5655
eee[ccc[bb[a[cccnnnnnccc]a]bbccceeee	chr20:25481529-25481743(-)$1	214	67	103	13.5797
eccc"""ccc!!ddddnnnnndddd22ccc333ccc	chr3:42674153-42674396(+)$1	243	9	45	16.0076
"ggggggg!!ddddcccmmmmccc22dddd4444gg	chr5:145503446-145503690(-)$1	244	158	194	13.2356
gggggg[ccc"""cccooooooccc]cccggggggg	chr13:42873679-42873916(+)$1	237	49	85	14.9559
b[cccccc!!cccrrrrrrrrrccc22ccc22ccc]	chr17:27613424-27613679(-)$1	255	64	100	11.8343
ccc[a####eeeeeooooooeeeee22accc]ccc3	chr7:151859293-151859535(-)$1	242	142	178	11.5580
cbb"""ccc####cccnnnnnccc22ccc333bb]c	chr2:152321770-152321992(+)$1	222	117	153	16.5295
gggggg"""cccddddnnnnndddd]ccc4444ggg	chr16:24583056-24583307(+)$1	251	23	59	14.4772
+===========cccooooooccc>>>>>>>>>>>=	chr4:40122398-40122647(+)$1	249	150	186	12.3488
hhh"""cccccc[cccooooooccc]ccc22ccc77	chr20:49510077-49510325(-)$1	248	121	157	12.4802
ffffff[dddd!!cccooooooccc22ddddfffff	chr10:93768571-93768807(+)$1	236	49	85	12.9549
!iiiiiiiii"""bbccclllccc]bb333iiiiii	chr2:71576665-71576929(+)$1	264	109	145	13.4611
!dddd"""dddd!!cccmmmmccc22dddddddd22	chr14:45433266-45433578(+)$1	312	66	102	11.8145
!!eeeee!!ccc!!cccmmmmccc22ccc22eeeee	chr2:232325088-232325301(-)$1	213	163	199	12.9369
fff####bbccc[cccnnnnncccccc]bbffffff	chr1:197071673-197071958(-)$1	285	43	79	12.5814
##ccc[ccc"""a[bboooooobb]a22ccccccdd	chr2:239162072-239162345(-)$1	273	69	105	13.1268
ff[a"""ccc!!ddddmmmmdddd4444ccc4444a	chr17:5085995-5086256(-)$1	261	156	192	13.1100
:ffffff[ccc"""ddddllldddd333ccc]ffff	chr7:77378787-77379109(+)$1	322	64	100	12.2505
===========!!cccooooooccc22=========	chr5:73931033-73931270(-)$1	237	136	172	16.8030
"""dddd!!gggggggnnnnnggggggg4444dddd	chr9:138379046-138379298(+)$1	252	54	90	12.0923
iiiii[a[ccc!!cccnnnnnccc333ccca]iiii	chr2:153488422-153488628(+)$1	206	92	128	17.9245
===========[bbbbnnnnnbb]bb]=========	chr21:35468678-35468958(+)$1	280	62	98	13.3468
"""bb"""dddd!!cccmmmmccc]dddd333bb22	chr1:39838118-39838369(+)$1	251	80	116	12.6778
ggggggg[ccc!!bbnnnnnbbccc]ggggggg22g	chr2:61632744-61633005(-)$1	261	42	78	12.4255
fffff"""bb####cccmmmmccc333bb333ffff	chr17:40872297-40872571(-)$1	274	160	196	14.4922
"bb[eeeee"""ddddnnnnndddd333eeeeebbd	chr10:29754255-29754628(+)$1	373	246	282	12.7875
ccc!!eeeee####cccmmmmccc333eeeee]ccc	chr11:118373854-118374101(+)$1	247	117	153	13.6511
####bb!!dddd!!cccmmmmccc22dddd]bb]ff	chr12:46320290-46320545(-)$1	255	93	129	12.6304
!!a[bb!!ccc!!cccooooooccc22ccc4444bb	chr15:42979531-42979775(+)$1	244	137	173	16.0253
==========ddddcccmmmmccc]dddd]======	chr16:31091053-31091355(+)$1	302	161	197	12.8750
d[a[===========[bblllbb22===========	chr17:37618167-37618456(+)$1	289	120	156	12.3862
dd!!ccc[ccc####bbmmmmbb333cccccc22dd	chr7:151873384-151873696(-)$1	312	93	129	12.5679
ffbb[bb[bb"""cccnnnnnccc333bbbb]bb::	chr19:19135424-19135690(-)$1	266	103	139	12.4191
ddd!!ggggggg[cccnnnnncccggggggg22ddd	chr10:101610258-101610497(+)$1	239	59	95	13.6377
dd[iiiiiiiiixxxxxxxxxxxxxxxiiiiiiiii	chrX:41025033-41025282(+)$1	249	69	105	11.0901
d"""ddddddddddddnnnnndddd22dddd333dd	chr11:14890930-14891178(+)$1	248	197	233	13.4259
"""dddd"""ddddoooooodddd333dddd333gg	chr3:42679887-42680133(+)$1	246	32	68	12.8221
!ccc!!dddd[ccc[ccclllccc333ccc]dddd]	chr6:144757134-144757352(+)$1	218	98	134	13.5329
e"""ffffff"""ddddllldddd333ffffff444	chr3:37336414-37336668(+)$1	254	35	71	13.7044
e"""ccc!!ddddcccnnnnnccc22dddd22ccce	chr17:37565320-37565626(-)$1	306	194	230	15.0672
$$$$ffffff####bboooooobb4444ffffff22	chr20:18296029-18296359(+)$1	330	248	284	12.1559
e!!ccc!!ddddrrrrrrrrrdddd22ccc]eeeee	chr1:91403980-91404242(-)$1	262	30	66	10.8114
========[ccc[cccnnnnnccc]ccc========	chr6:138199718-138199978(+)$1	260	144	180	16.1186
gggg####ccc[ddddnnnnndddd22ccc333ggg	chr12:104335087-104335311(+)$1	224	170	206	15.9730
ccc[ggggggg!!ddddlllddddggggggg]cccb	chr8:145693805-145694083(+)$1	278	41	77	11.9939
==========####bbnnnnnbb4444=========	chr16:72992681-72992939(-)$1	258	217	253	16.5519
dd!!ggggggg[a!!annnnna22a]ggggggg333	chr7:72892196-72892434(-)$1	238	98	134	13.6654
d!!bb!!cccccc[ccclllcccccc]ccc22bb44	chr10:64966756-64966986(-)$1	230	113	149	13.0143
""ffffff####ddddnnnnndddd22ffffff333	chr2:167089822-167090055(-)$1	233	88	124	14.1026
dd!!ffffff####cccmmmmccc333ffffff]dd	chr6:4041016-4041261(+)$1	245	95	131	13.6605

#otherMatches

#Seq PSSM
CUUCCCCAAGAAAAGCCUGGAGGGCACUUGUGGGGG	chr1:226032884-226033155(-)$1	271	42	78	13.5723
CCAACGCCAAAUUGCCUCAUUGGUUUGGCGCCUGGG	chr4:85708708-85708968(-)$1	260	194	230	13.1172
AGGGAUGAAAUGUGACAGUAAGUAAGUUUUCUUUUC	chr17:64637372-64637657(+)$1	285	195	231	12.5655
GGGCGCUAUGGAAGUCUUCCUGACAUGCAGGUCCCA	chr20:25481529-25481743(-)$1	214	67	103	13.5797
UUCAGAAUCAUCUUCAGAAAGUGAACUUGAACAUGA	chr3:42674153-42674396(+)$1	243	9	45	16.0076
GGGAUUGUAAUAACCAGUUAACUGUAGUUAAACCAU	chr5:145503446-145503690(-)$1	244	158	194	13.2356
AGGUCAUCUAAUGCUUCAGAUAAAGAUAGUGAUUUA	chr13:42873679-42873916(+)$1	237	49	85	14.9559
AAAUUAAGACUAGCCUUUUUAUCUAUCCUUCAAAUA	chr17:27613424-27613679(-)$1	255	64	100	11.8343
CAGAGUCCUCCCCAUUCUGCUGGGGCCCCUGCUGCC	chr7:151859293-151859535(-)$1	242	142	178	11.5580
UCUGAAGCAGACACAGCUAAACUGAAUGCCAAAGAA	chr2:152321770-152321992(+)$1	222	117	153	16.5295
CCUUGUAAGGAUCGUGAGAAGCAUGUAUUAGAAGCA	chr16:24583056-24583307(+)$1	251	23	59	14.4772
ACAUUGGGUAGCUCCAAUCUAGGAAGUUCUGAAAUG	chr4:40122398-40122647(+)$1	249	150	186	12.3488
GGGUCUAGGUGGCAACGCACCAGUUUCCAUUCCUCA	chr20:49510077-49510325(-)$1	248	121	157	12.4802
UAAACUUCAUGGAAUUCUGUGUGAUGACAUGGGUUU	chr10:93768571-93768807(+)$1	236	49	85	12.9549
CCUGAAAUUCCAACUGAUGAGGUCGAGAAUGAAUUU	chr2:71576665-71576929(+)$1	264	109	145	13.4611
AGGCCAGAUUGGCUAGGAAAACCUUACCAAGGCUCA	chr14:45433266-45433578(+)$1	312	66	102	11.8145
AAUAACAAAGGGACUUAAUACUGAAACCUGAUGUUA	chr2:232325088-232325301(-)$1	213	163	199	12.9369
GGUAAAAUGCAGCGUGAAAAGUACCUGACAAUUUUG	chr1:197071673-197071958(-)$1	285	43	79	12.5814
AUUGAAGUCCAAGCGGGUCAAACCUCGAGACUCAUC	chr2:239162072-239162345(-)$1	273	69	105	13.1268
AGAGAAGCCCUAUCAGUGCACUGAAUGUGGGAAAGC	chr17:5085995-5086256(-)$1	261	156	192	13.1100
AUAGCAAAUCUAUUCAGACCAUCUGCUCAGGAUUGC	chr7:77378787-77379109(+)$1	322	64	100	12.2505
GUUGGGGGGCACACGGCCGCAACUGGCUGCCUCCCG	chr5:73931033-73931270(-)$1	237	136	172	16.8030
CACAGCUGGUCUGUUCAGCCAGGGCGGGAAGGGGCU	chr9:138379046-138379298(+)$1	252	54	90	12.0923
UUUUCAGCUCUUAGAUACAAAGUCAACAGACAGAAA	chr2:153488422-153488628(+)$1	206	92	128	17.9245
UGGCAUUUAUGGUGGUGAUCAGCAUAGCAUGGGUGC	chr21:35468678-35468958(+)$1	280	62	98	13.3468
AAUUGCAAAGGUACUUCUUUAGAAAAUCUCAUCAUG	chr1:39838118-39838369(+)$1	251	80	116	12.6778
UCCUUUUAGUUUAUGGAGUACAGAUGAGAAGGAAAA	chr2:61632744-61633005(-)$1	261	42	78	12.4255
GCCCUGAAUCAGUACUCAGAUGAGGAGGAGGAAGGG	chr17:40872297-40872571(-)$1	274	160	196	14.4922
AGCUGCCCCCUGCAGGCCUUACCUGGCUGGGGCGCG	chr10:29754255-29754628(+)$1	373	246	282	12.7875
GACAACUGGUGAGGAAGGAAACUUGAAGCCAGAGUU	chr11:118373854-118374101(+)$1	247	117	153	13.6511
AUUCUGCUGACAAACAUAGAAAUGACUGUCCCAAUU	chr12:46320290-46320545(-)$1	255	93	129	12.6304
GGUGGUGGCCCAACCCCUAAGUGGGAAGGGAAAAAU	chr15:42979531-42979775(+)$1	244	137	173	16.0253
GAAGGGCUGCCAGACUGAAGCCAGCUCUGAGCGGCC	chr16:31091053-31091355(+)$1	302	161	197	12.8750
GGAACUUUUUUCCCUUCUUCAGGUCAGGGGAAAGGG	chr17:37618167-37618456(+)$1	289	120	156	12.3862
GUAAACCAUGUUUUUUCUCAGGGUGUGCAGGUAAAC	chr7:151873384-151873696(-)$1	312	93	129	12.5679
GGGCGAGAGUACAUAGACCACCUGAAGGCCUGGCUA	chr19:19135424-19135690(-)$1	266	103	139	12.4191
GUCUUUAGGAGCUAACACAUGGUUGCUUCUAUUGGC	chr10:101610258-101610497(+)$1	239	59	95	13.6377
CAAUUUUCAAUGUUUUUUCAAGAUUUUUAUUGAAGG	chrX:41025033-41025282(+)$1	249	69	105	11.0901
UAAACUGCAGGUGGAGAAUUCCUCCUUACCUCAAGC	chr11:14890930-14891178(+)$1	248	197	233	13.4259
CAAGGAAGAAGGUGAGGCCACAUCCGAUUCUGAAUC	chr3:42679887-42680133(+)$1	246	32	68	12.8221
GAUGAUGUUGAAGAAGUCAAAGACCAGUUUGCAACC	chr6:144757134-144757352(+)$1	218	98	134	13.5329
UAAAUCAUUUUAUGUUUUAGGAGCUCCAAAUGGACC	chr3:37336414-37336668(+)$1	254	35	71	13.7044
GGCAGACACUGAGGGAAAGUCUCCAUCUCAUAGUUC	chr17:37565320-37565626(-)$1	306	194	230	15.0672
GAAGGCACACUCGGGGGAGAAGCCAAUUGUGUGCAG	chr20:18296029-18296359(+)$1	330	248	284	12.1559
AGGAGCCUGGAGAAAAUGCUACUCUUAGUUAUGACC	chr1:91403980-91404242(-)$1	262	30	66	10.8114
UGAGGGGCUCCCUGGCAUGGCGCUCGGGGCCUCUCG	chr6:138199718-138199978(+)$1	260	144	180	16.1186
UUGUACCCACAUCUGCUCCACGUGGUCUGUUUGACG	chr12:104335087-104335311(+)$1	224	170	206	15.9730
AGGGGCUUAUCUGAGGCAGGGCCUGGUAAGUGCCUG	chr8:145693805-145694083(+)$1	278	41	77	11.9939
AGAGAAGCAGGAAGUGGGCGACGGGGAUUGCUUCUC	chr16:72992681-72992939(-)$1	258	217	253	16.5519
CAAAGACAGGGAGGACAAGAGGAGCGCCCUGUCCUG	chr7:72892196-72892434(-)$1	238	98	134	13.6654
AUAGCACUGUAAUCUGUAGUACAAUUAACAAAGCAA	chr10:64966756-64966986(-)$1	230	113	149	13.0143
UUUGGUUACUUUAGUGGCAAACACUCUUGGCUACUC	chr2:167089822-167090055(-)$1	233	88	124	14.1026
AGUCUUUCUGAAGGAAUGAAAGUUGAGCAGGAAUCU	chr6:4041016-4041261(+)$1	245	95	131	13.6605

#DB
(((((((.(.((..((((...))))..)).).))))	chr1:226032884-226033155(-)$1	1	42	78	13.5723
(((.((((((...(((.....)))))))))..))))	chr4:85708708-85708968(-)$1	1	194	230	13.1172
.((((.((((....((.....))....))))..)))	chr17:64637372-64637657(+)$1	1	195	231	12.5655
(((.(((.((.(.(((.....))).).)))))))))	chr20:25481529-25481743(-)$1	1	67	103	13.5797
((((...(((..((((.....))))..)))...)))	chr3:42674153-42674396(+)$1	1	9	45	16.0076
.(((((((..(((((((....)))..))))....))	chr5:145503446-145503690(-)$1	1	158	194	13.2356
((((((.(((...(((......))).))))))))))	chr13:42873679-42873916(+)$1	1	49	85	14.9559
(.((((((..(((.........)))..)))..))).	chr17:27613424-27613679(-)$1	1	64	100	11.8343
(((.(....(((((......)))))..)))).))).	chr7:151859293-151859535(-)$1	1	142	178	11.5580
(((...(((....(((.....)))..)))...)).)	chr2:152321770-152321992(+)$1	1	117	153	16.5295
((((((...(((((((.....)))).)))....)))	chr16:24583056-24583307(+)$1	1	23	59	14.4772
.((((((((((((((......)))...........)	chr4:40122398-40122647(+)$1	1	150	186	12.3488
(((...((((((.(((......))).)))..)))..	chr20:49510077-49510325(-)$1	1	121	157	12.4802
((((((.((((..(((......)))..)))))))))	chr10:93768571-93768807(+)$1	1	49	85	12.9549
.(((((((((...(((((...))).))...))))))	chr2:71576665-71576929(+)$1	1	109	145	13.4611
.((((...((((..(((....)))..))))))))..	chr14:45433266-45433578(+)$1	1	66	102	11.8145
..(((((..(((..(((....)))..)))..)))))	chr2:232325088-232325301(-)$1	1	163	199	12.9369
(((....(((((.(((.....)))))).))))))))	chr1:197071673-197071958(-)$1	1	43	79	12.5814
..(((.(((...(.((......)).)..))))))))	chr2:239162072-239162345(-)$1	1	69	105	13.1268
((.(...(((..((((....))))....)))....)	chr17:5085995-5086256(-)$1	1	156	192	13.1100
.((((((.(((...((((...))))...))).))))	chr7:77378787-77379109(+)$1	1	64	100	12.2505
(((((((((((..(((......)))..)))))))))	chr5:73931033-73931270(-)$1	1	136	172	16.8030
...((((..(((((((.....)))))))....))))	chr9:138379046-138379298(+)$1	1	54	90	12.0923
(((((.(.(((..(((.....)))...)))).))))	chr2:153488422-153488628(+)$1	1	92	128	17.9245
(((((((((((.((((.....)).)).)))))))))	chr21:35468678-35468958(+)$1	1	62	98	13.3468
...((...((((..(((....))).))))...))..	chr1:39838118-39838369(+)$1	1	80	116	12.6778
(((((((.(((..((.....))))).)))))))..)	chr2:61632744-61633005(-)$1	1	42	78	12.4255
(((((...((....(((....)))...))...))))	chr17:40872297-40872571(-)$1	1	160	196	14.4922
.((.(((((...((((.....))))...))))))))	chr10:29754255-29754628(+)$1	1	246	282	12.7875
(((..(((((....(((....)))...))))).)))	chr11:118373854-118374101(+)$1	1	117	153	13.6511
....((..((((..(((....)))..)))).)).))	chr12:46320290-46320545(-)$1	1	93	129	12.6304
..(.((..(((..(((......)))..)))....))	chr15:42979531-42979775(+)$1	1	137	173	16.0253
(((((((((((((((((....))).)))).))))))	chr16:31091053-31091355(+)$1	1	161	197	12.8750
(.(.(((((((((((.((...))..)))))))))))	chr17:37618167-37618456(+)$1	1	120	156	12.3862
((..(((.(((....((....))...))))))..))	chr7:151873384-151873696(-)$1	1	93	129	12.5679
))((.((.((...(((.....)))...)))).))..	chr19:19135424-19135690(-)$1	1	103	139	12.4191
(((..(((((((.(((.....))))))))))..)))	chr10:101610258-101610497(+)$1	1	59	95	13.6377
((.(((((((((...............)))))))))	chrX:41025033-41025282(+)$1	1	69	105	11.0901
(...((((((((((((.....))))..))))...))	chr11:14890930-14891178(+)$1	1	197	233	13.4259
...((((...((((......))))...))))...))	chr3:42679887-42680133(+)$1	1	32	68	12.8221
.(((..((((.(((.(((...)))...))).)))).	chr6:144757134-144757352(+)$1	1	98	134	13.5329
(...((((((...((((...))))...))))))...	chr3:37336414-37336668(+)$1	1	35	71	13.7044
(...(((..(((((((.....)))..))))..))))	chr17:37565320-37565626(-)$1	1	194	230	15.0672
....((((((....((......))....))))))..	chr20:18296029-18296359(+)$1	1	248	284	12.1559
(..(((..((((.........))))..))).)))))	chr1:91403980-91404242(-)$1	1	30	66	10.8114
((((((((.(((.(((.....))).)))))))))))	chr6:138199718-138199978(+)$1	1	144	180	16.1186
((((....(((.((((.....))))..)))...)))	chr12:104335087-104335311(+)$1	1	170	206	15.9730
(((.(((((((..((((...))))))))))).)))(	chr8:145693805-145694083(+)$1	1	41	77	11.9939
((((((((((....((.....))....)))))))))	chr16:72992681-72992939(-)$1	1	217	253	16.5519
((..(((((((.(..(.....)..).)))))))...	chr7:72892196-72892434(-)$1	1	98	134	13.6654
(..((..((((((.(((...)))))).)))..))..	chr10:64966756-64966986(-)$1	1	113	149	13.0143
..((((((....((((.....))))..))))))...	chr2:167089822-167090055(-)$1	1	88	124	14.1026
((..((((((....(((....)))...)))))).))	chr6:4041016-4041261(+)$1	1	95	131	13.6605

#PSSM
d : 0.16	= : 0.11	" : 0.11	e : 0.09	f : 0.09	! : 0.09	g : 0.07	c : 0.07	# : 0.03	) : 0.01	b : 0.01	+ : 0.01	h : 0.01	: : 0.01	i : 0.01	$ : 0.01	
d : 0.15	= : 0.13	" : 0.13	f : 0.11	c : 0.09	g : 0.09	! : 0.07	[ : 0.03	b : 0.03	i : 0.03	# : 0.03	e : 0.01	h : 0.01	$ : 0.01	
= : 0.13	c : 0.13	" : 0.11	g : 0.09	f : 0.09	! : 0.09	d : 0.07	b : 0.05	e : 0.03	i : 0.03	[ : 0.03	a : 0.03	h : 0.01	# : 0.01	$ : 0.01	
= : 0.13	[ : 0.13	c : 0.09	g : 0.09	" : 0.09	! : 0.09	d : 0.07	f : 0.07	i : 0.05	b : 0.05	# : 0.03	e : 0.01	a : 0.01	$ : 0.01	
= : 0.15	f : 0.15	c : 0.11	g : 0.11	d : 0.09	" : 0.07	b : 0.07	i : 0.05	! : 0.05	e : 0.03	# : 0.03	a : 0.01	[ : 0.01	
= : 0.15	f : 0.13	" : 0.13	g : 0.13	c : 0.09	[ : 0.05	# : 0.05	e : 0.05	d : 0.05	b : 0.05	i : 0.03	! : 0.03	
= : 0.15	c : 0.13	f : 0.11	" : 0.11	d : 0.09	g : 0.09	! : 0.07	# : 0.05	e : 0.05	[ : 0.03	i : 0.03	a : 0.01	b : 0.01	
c : 0.15	[ : 0.13	= : 0.13	! : 0.11	f : 0.09	" : 0.09	d : 0.07	g : 0.07	# : 0.03	i : 0.03	e : 0.03	b : 0.01	
c : 0.24	d : 0.15	= : 0.11	! : 0.09	f : 0.07	b : 0.07	g : 0.05	# : 0.03	" : 0.03	i : 0.03	e : 0.03	a : 0.01	[ : 0.01	
c : 0.28	d : 0.16	= : 0.11	f : 0.07	g : 0.07	b : 0.05	" : 0.05	! : 0.03	e : 0.03	# : 0.03	i : 0.03	[ : 0.01	
c : 0.24	d : 0.18	# : 0.15	" : 0.13	= : 0.07	g : 0.07	[ : 0.03	! : 0.03	b : 0.01	e : 0.01	i : 0.01	
# : 0.16	d : 0.16	" : 0.15	! : 0.15	c : 0.15	[ : 0.05	= : 0.03	g : 0.03	b : 0.01	a : 0.01	e : 0.01	i : 0.01	
! : 0.20	d : 0.20	# : 0.15	" : 0.11	[ : 0.09	c : 0.07	a : 0.03	e : 0.01	g : 0.01	b : 0.01	= : 0.01	x : 0.01	r : 0.01	
c : 0.30	d : 0.22	# : 0.13	! : 0.11	b : 0.05	r : 0.03	[ : 0.03	e : 0.01	" : 0.01	g : 0.01	= : 0.01	x : 0.01	
c : 0.47	d : 0.20	b : 0.13	r : 0.03	o : 0.03	g : 0.01	= : 0.01	# : 0.01	x : 0.01	[ : 0.01	! : 0.01	
c : 0.49	d : 0.20	b : 0.11	o : 0.05	r : 0.03	g : 0.01	n : 0.01	[ : 0.01	x : 0.01	a : 0.01	
n : 0.39	c : 0.22	o : 0.18	d : 0.07	r : 0.03	b : 0.03	m : 0.01	x : 0.01	
n : 0.39	m : 0.20	o : 0.18	l : 0.05	d : 0.03	r : 0.03	c : 0.03	b : 0.01	x : 0.01	
n : 0.39	m : 0.20	o : 0.18	l : 0.15	r : 0.03	x : 0.01	
n : 0.39	m : 0.20	o : 0.18	l : 0.15	r : 0.03	x : 0.01	
n : 0.37	m : 0.18	o : 0.15	l : 0.09	d : 0.07	r : 0.03	e : 0.01	b : 0.01	x : 0.01	c : 0.01	
c : 0.41	d : 0.24	o : 0.13	b : 0.11	r : 0.01	e : 0.01	g : 0.01	x : 0.01	a : 0.01	
c : 0.54	d : 0.24	b : 0.13	e : 0.01	g : 0.01	x : 0.01	2 : 0.01	
c : 0.54	d : 0.24	4 : 0.03	b : 0.03	2 : 0.03	e : 0.01	g : 0.01	] : 0.01	3 : 0.01	x : 0.01	
d : 0.16	c : 0.16	3 : 0.16	2 : 0.13	] : 0.11	4 : 0.07	g : 0.05	f : 0.01	e : 0.01	> : 0.01	b : 0.01	x : 0.01	a : 0.01	
2 : 0.32	3 : 0.20	] : 0.09	4 : 0.07	c : 0.05	g : 0.05	a : 0.03	b : 0.03	d : 0.03	f : 0.01	> : 0.01	= : 0.01	x : 0.01	
2 : 0.22	3 : 0.18	c : 0.15	d : 0.11	g : 0.09	4 : 0.07	] : 0.05	f : 0.01	> : 0.01	b : 0.01	= : 0.01	x : 0.01	
c : 0.28	d : 0.18	g : 0.09	b : 0.07	f : 0.07	= : 0.07	3 : 0.05	4 : 0.03	a : 0.01	> : 0.01	] : 0.01	2 : 0.01	e : 0.01	i : 0.01	
c : 0.33	d : 0.18	b : 0.09	f : 0.09	= : 0.09	g : 0.07	e : 0.03	> : 0.01	3 : 0.01	4 : 0.01	i : 0.01	
c : 0.26	d : 0.15	f : 0.09	g : 0.09	= : 0.09	3 : 0.07	] : 0.03	4 : 0.03	2 : 0.03	b : 0.03	e : 0.03	> : 0.01	i : 0.01	
2 : 0.11	c : 0.11	= : 0.11	d : 0.09	3 : 0.09	g : 0.09	f : 0.09	4 : 0.07	] : 0.05	a : 0.03	i : 0.03	e : 0.03	> : 0.01	b : 0.01	
3 : 0.13	] : 0.11	2 : 0.11	f : 0.11	= : 0.11	4 : 0.09	c : 0.07	e : 0.07	g : 0.05	i : 0.03	d : 0.03	> : 0.01	b : 0.01	
f : 0.15	= : 0.13	c : 0.11	b : 0.09	d : 0.07	e : 0.07	3 : 0.07	4 : 0.07	2 : 0.05	g : 0.05	i : 0.05	> : 0.01	] : 0.01	
c : 0.15	= : 0.13	d : 0.11	b : 0.09	f : 0.09	4 : 0.07	3 : 0.07	e : 0.05	g : 0.05	i : 0.05	2 : 0.03	] : 0.03	> : 0.01	
d : 0.16	= : 0.13	c : 0.11	g : 0.09	f : 0.09	2 : 0.07	e : 0.05	i : 0.05	4 : 0.05	b : 0.03	3 : 0.03	] : 0.01	> : 0.01	7 : 0.01	: : 0.01	
d : 0.16	= : 0.15	g : 0.11	f : 0.09	e : 0.07	c : 0.05	3 : 0.05	i : 0.05	2 : 0.05	] : 0.03	b : 0.03	4 : 0.03	7 : 0.01	a : 0.01	: : 0.01	

#score	714.9330674124201
#seq	53
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_transcript_m3_run2.txt

#BEAR
"dddd!!ddddqqqqqqqqdddd22dddd	chr12:49181483-49181722(-)$1	239	15	44	16.3233
:eeeee!!cccqqqqqqqqccc22eeeee	chr20:62669808-62670050(+)$1	242	83	112	16.3659
ee[a[ccc[bbqqqqqqqqbbccc]a]ee	chr11:118793206-118793503(-)$1	297	144	173	15.8304
c[cccbb!!cccqqqqqqqqccc22bb]c	chr16:15248017-15248292(-)$1	275	212	241	13.8736
ggggggg[cccqqqqqqqqccc]gggggg	chr8:143442300-143442546(-)$1	246	145	174	17.8894
$$$$gggggggqqqqqqqqggggggg333	chr1:113249517-113249805(-)$1	288	135	164	15.7158
dd[ccceeeeeqqqqqqqqeeeee4444c	chr19:5048273-5048509(+)$1	236	113	142	16.1044
!dddd[a[cccqqqqqqqqccc]adddd]	chr21:46855484-46855763(+)$1	279	150	179	16.8441
iiiiiiiddddqqqqqqqqdddd]iiiii	chr7:2684184-2684429(+)$1	245	18	47	17.3005
hhhhh[eeeeeqqqqqqqqeeeeehhhhh	chr6:519093-519356(-)$1	263	123	152	15.0819
!!gggggggbbqqqqqqqqbb]ggggggg	chr16:46931857-46932112(+)$1	255	144	173	16.2662
eeeee[eeeeeqqqqqqqqeeeee]eeee	chr8:71314086-71314334(-)$1	248	166	195	16.4460
fff[bbeeeeeqqqqqqqqeeeee]bb22	chr19:18716839-18717124(-)$1	285	17	46	14.8807
eggggggg[bbqqqqqqqqbb22gggggg	chr7:1161105-1161393(-)$1	288	130	159	15.7121
E:iiiiiiiiiqqqqqqqqiiiiiiiii:	chr20:60933621-60933873(-)$1	252	154	183	13.5877
ffffff[ddddqqqqqqqqdddd]fffff	chr7:1905502-1905742(-)$1	240	58	87	16.4322
==========aqqqqqqqqa]========	chr17:79962977-79963192(+)$1	215	100	129	17.1228
eeeeee[ddddqqqqqqqqdddd]eeeee	chr9:133358645-133358960(+)$1	315	49	78	16.9136
f$$$$$a[cccqqqqqqqqccc]a4444f	chr19:1295928-1296187(+)$1	259	91	120	16.3000
cc[ccc[ddddqqqqqqqqddddccc]cc	chr11:70862056-70862327(-)$1	271	36	65	16.9960
ffffff!!cccqqqqqqqqccc333ffff	chr19:1434047-1434304(+)$1	257	164	193	17.3115
[ccc[ffffffqqqqqqqqffffff]ccc	chr19:13110809-13111050(+)$1	241	4	33	15.5805
gggggg[ddddqqqqqqqqddddgggggg	chr9:113018410-113018725(-)$1	315	183	212	17.4696
fffffa[ddddqqqqqqqqdddd]a22ff	chr9:137281768-137281989(+)$1	221	56	85	16.3205
fffff"""cccqqqqqqqqccc333ffff	chr1:2026275-2026523(+)$1	248	200	229	17.4112
eeeee"""bbaqqqqqqqqa]bb]eeeee	chr7:2676967-2677226(+)$1	259	220	249	15.8500
dddeeeee[cccqqqqqqqqccc]eeeee	chrX:129118426-129118724(+)$1	298	133	162	14.3236
eeeee!!ddddqqqqqqqqdddd]eeeee	chr12:133532293-133532533(-)$1	240	2	31	17.2317
b!!ccc!!cccqqqqqqqqccc22ccc22	chr1:116916135-116916361(+)$1	226	160	189	17.0436
hhh$$$$$cccqqqqqqqqccchhhhhhh	chr4:185393892-185394157(-)$1	265	85	114	15.0207
cc!!bb[ddddqqqqqqqqdddd]bb22c	chr12:124995824-124996055(-)$1	231	199	228	16.0525
"eeeee[cccrrrrrrrrrccceeeee22	chr2:242510488-242510825(+)$1	337	54	83	10.6665
ggggeeeee[aqqqqqqqqa]eeeee888	chr9:38556692-38556996(-)$1	304	157	186	14.9139
eee[bb[cccqqqqqqqqcccbb]eeeee	chr12:133087257-133087528(+)$1	271	109	138	14.0576
ggggg[ccc[aqqqqqqqqaccc]ggggg	chr11:782484-782733(+)$1	249	3	32	17.5287
ggggg[eeeeeqqqqqqqqeeeeeggggg	chr16:88811084-88811339(-)$1	255	97	126	16.9625
c[ccc!!ddddqqqqqqqqdddd333ccc	chr14:64970862-64971138(+)$1	276	20	49	17.6729
:ccc####cccqqqqqqqqccc4444ccc	chr20:35977661-35977900(+)$1	239	74	103	16.6656
gggg!!a[cccqqqqqqqqccc]a333gg	chr7:100137250-100137536(+)$1	286	209	238	18.3632
dddbb[eeeeeqqqqqqqqeeeee22bb2	chr17:76777504-76777752(-)$1	248	75	104	14.7268
gg####eeeeeqqqqqqqqeeeee333gg	chr2:241568110-241568370(+)$1	260	18	47	16.8844
:eeeee[cccqqqqqqqqccc]eeeeedd	chr16:88839869-88840084(-)$1	215	66	95	13.6068
hhhhh[a[cccqqqqqqqqccc]ahhhhh	chr19:2135721-2136004(-)$1	283	26	55	16.1837
!!dddd"""bbqqqqqqqqbb]dddd444	chr16:88583312-88583574(+)$1	262	36	65	15.0967
[dddd[eeeeeqqqqqqqqeeeeedddd]	chr19:3360428-3360719(+)$1	291	223	252	15.7284
ccc!!ffffffqqqqqqqqffffffcccc	chr9:136856136-136856432(-)$1	296	235	264	15.5753
gggggg!!cccqqqqqqqqccc]gggggg	chr1:18014319-18014586(+)$1	267	75	104	18.1727
b[eeeee[cccqqqqqqqqccceeeeebb	chr4:8211611-8211876(+)$1	265	111	140	16.3768
dd"""ffffffqqqqqqqqffffffdddd	chr19:3359660-3359926(+)$1	266	141	170	14.6894
eeee!!ddddrrrrrrrrrdddd22eeee	chr21:45141907-45142191(+)$1	284	118	147	10.4884
"""dddd[cccqqqqqqqqcccddddfff	chr22:50870939-50871215(+)$1	276	25	54	16.1051
[ccc"""ddddqqqqqqqqddddccc]ff	chr16:640162-640415(+)$1	253	175	204	17.0971
22dddd:ddddqqqqqqqqddddffffff	chr2:241191105-241191372(-)$1	267	163	192	13.8846
#ffffff!!bbqqqqqqqqbbffffffgg	chr9:136741388-136741625(-)$1	237	37	66	15.1396
cc[a[ffffffqqqqqqqqffffffa]cc	chr7:2249028-2249272(-)$1	244	204	233	15.6362

#otherMatches

#Seq PSSM
UGGGCAGAGCCAUCCUUAGGGCUGGGCCU	chr12:49181483-49181722(-)$1	239	15	44	16.3233
GUCGGGCUGGGUCGCGUCUCCCUUcccgg	chr20:62669808-62670050(+)$1	242	83	112	16.3659
GGGAGCCAAGCGGGUACAGGCUGGGUGCC	chr11:118793206-118793503(-)$1	297	144	173	15.8304
CACAGCGGCCCUGCUAAAUAAGGAACGCC	chr16:15248017-15248292(-)$1	275	212	241	13.8736
GGGCUGGAGCUGUUCUGGAAGCCCCGGCC	chr8:143442300-143442546(-)$1	246	145	174	17.8894
GGCGUCUUGGGAACUCGUCCCCAGGAGAG	chr1:113249517-113249805(-)$1	288	135	164	15.7158
CCGGGCUCUGCUUGUGACUGCGGAACCUG	chr19:5048273-5048509(+)$1	236	113	142	16.1044
CUGCCGUGGGCUGAGGCAUGUUGGGGCAU	chr21:46855484-46855763(+)$1	279	150	179	16.8441
GUCCUGCCCCUGGAGGGUGGGGGUGCAGG	chr7:2684184-2684429(+)$1	245	18	47	17.3005
CUCGGUGGGUGUUGGUUCUCGUCUCCGAG	chr6:519093-519356(-)$1	263	123	152	15.0819
AUGGUGGGGGCAGGAUGUGGCUUCCCACU	chr16:46931857-46932112(+)$1	255	144	173	16.2662
UAGACGUUGUCUUAGACACGACGAAGUCU	chr8:71314086-71314334(-)$1	248	166	195	16.4460
GCCAGGCCCCCGGGGGCUGGGGGGAUCGC	chr19:18716839-18717124(-)$1	285	17	46	14.8807
UGGUGGUCAGCGGAAGGGAGCAGGGCUAC	chr7:1161105-1161393(-)$1	288	130	159	15.7121
UGGUUCCUCCUCUGUAAAUGGGAGGAGCA	chr20:60933621-60933873(-)$1	252	154	183	13.5877
AGAGUUUUGCUUCAAAACCAGCAUGGUUC	chr7:1905502-1905742(-)$1	240	58	87	16.4322
CUGGGCAGAGCAGAACACGGCCUCUGCUC	chr17:79962977-79963192(+)$1	215	100	129	17.1228
AAGCUCGUAAUUGAAAUUCGUUAAGGGCU	chr9:133358645-133358960(+)$1	315	49	78	16.9136
gaauggggccaggggggagugggcggggc	chr19:1295928-1296187(+)$1	259	91	120	16.3000
GGAGGUUCCUGAACACUCACAGGGCCCCC	chr11:70862056-70862327(-)$1	271	36	65	16.9960
GUCAGGUUGGGCCCAGAAACCCUUCCCUG	chr19:1434047-1434304(+)$1	257	164	193	17.3115
GGGCCGAGCUCAGAGCCGAGGGCUCUGCC	chr19:13110809-13111050(+)$1	241	4	33	15.5805
CCUGGGACUGCGGGAAGCAGCGGCCUGGG	chr9:113018410-113018725(-)$1	315	183	212	17.4696
UGCCACAGUACCCUGAUAUGUGCCGAUUG	chr9:137281768-137281989(+)$1	221	56	85	16.3205
GCUGCUCCGCCACACCCCAGGCCCCGUAG	chr1:2026275-2026523(+)$1	248	200	229	17.4112
GGGGGCUCAGGGGCAUCUACACUUCCCCC	chr7:2676967-2677226(+)$1	259	220	249	15.8500
CGGGGUCCCGCCGAGAGGAAGGCUGGGCC	chrX:129118426-129118724(+)$1	298	133	162	14.3236
GGGUCAGCUGGGCGAUUCACUGGGGGCCU	chr12:133532293-133532533(-)$1	240	2	31	17.2317
CGACGCAGUUUGGAAAUGGAGGGAGCGCA	chr1:116916135-116916361(+)$1	226	160	189	17.0436
UCCUUGUUCCCUAAGAAGCGGGGGAGGGG	chr4:185393892-185394157(-)$1	265	85	114	15.0207
GGGAUCAGAGUUCUCGGCCACUUGGAGAC	chr12:124995824-124996055(-)$1	231	199	228	16.0525
CCUGGACUCUCCUCUGCCCAGAUCCAGCA	chr2:242510488-242510825(+)$1	337	54	83	10.6665
gggguggucgugaaacauggagaccgggg	chr9:38556692-38556996(-)$1	304	157	186	14.9139
CCUGGGAGGGGAACACAGCCCCUGAGGGC	chr12:133087257-133087528(+)$1	271	109	138	14.0576
CUGGAGACGGCGGAUCGGAGCGUGUCCAG	chr11:782484-782733(+)$1	249	3	32	17.5287
UCCCUAGUCUGAUCCAGCCCAGGCAGGGA	chr16:88811084-88811339(-)$1	255	97	126	16.9625
CGCGGGAGCCUGGGUGGAGAGGCGGACUG	chr14:64970862-64971138(+)$1	276	20	49	17.6729
GGCUGGAAGCUGGGAGUGAGGUAGGGAGC	chr20:35977661-35977900(+)$1	239	74	103	16.6656
CCCGAGGGGGUCGAGGCAAACUGCAAGUG	chr7:100137250-100137536(+)$1	286	209	238	18.3632
GGCCCUGCCCGCGGGAGUCUGGGCCCGGU	chr17:76777504-76777752(-)$1	248	75	104	14.7268
GAGGAAGGCCCUUCGCUGUGGGCUGAGUC	chr2:241568110-241568370(+)$1	260	18	47	16.8844
UGCCUGUCAGCCUUUUCCCUGUCAGGCCC	chr16:88839869-88840084(-)$1	215	66	95	13.6068
GGGUCGUGGCCGUGUAGCAGGUGGGGCCU	chr19:2135721-2136004(-)$1	283	26	55	16.1837
GGGCACCCACAGAGGAAAAUGAGUGCACA	chr16:88583312-88583574(+)$1	262	36	65	15.0967
UGGCGCGUGUUGUGUUGUGAGCGCCGCCC	chr19:3360428-3360719(+)$1	291	223	252	15.7284
CCAGUGGGACUUAGGACGUGGUUCCUGGG	chr9:136856136-136856432(-)$1	296	235	264	15.5753
ugggauucacaccuaggacugucaucuca	chr1:18014319-18014586(+)$1	267	75	104	18.1727
cacccagaGGGGGACAUGGCCCCUGGGGC	chr4:8211611-8211876(+)$1	265	111	140	16.3768
CUCGAGGCGGGGACCCCCACUCGCCAGUC	chr19:3359660-3359926(+)$1	266	141	170	14.6894
CUCUGGCUUGGAUUCUAGACAGGAAGGAG	chr21:45141907-45142191(+)$1	284	118	147	10.4884
ACAGGGAGCCGACAGGAAGCGGUCCCGUC	chr22:50870939-50871215(+)$1	276	25	54	16.1051
AGUUCCUGCUGGUGGGCGACAGCGACGUG	chr16:640162-640415(+)$1	253	175	204	17.0971
GGUCCCUGGACAUCUGCCAGUCCCAGCCA	chr2:241191105-241191372(-)$1	267	163	192	13.8846
UGGCUGACUGGCUGCUCUCCCUCAGUCCC	chr9:136741388-136741625(-)$1	237	37	66	15.1396
CCUGUGGGCUCUGGGCUGUGAGCUCCUGG	chr7:2249028-2249272(-)$1	244	204	233	15.6362

#DB
.((((..((((........))))..))))	chr12:49181483-49181722(-)$1	1	15	44	16.3233
.(((((..(((........)))..)))))	chr20:62669808-62670050(+)$1	1	83	112	16.3659
((.(.(((.((........))))).).))	chr11:118793206-118793503(-)$1	1	144	173	15.8304
(.(((((..(((........)))..)).)	chr16:15248017-15248292(-)$1	1	212	241	13.8736
(((((((.(((........))).))))))	chr8:143442300-143442546(-)$1	1	145	174	17.8894
....(((((((........)))))))...	chr1:113249517-113249805(-)$1	1	135	164	15.7158
((.((((((((........)))))....)	chr19:5048273-5048509(+)$1	1	113	142	16.1044
.((((.(.(((........))).))))).	chr21:46855484-46855763(+)$1	1	150	179	16.8441
(((((((((((........)))).)))))	chr7:2684184-2684429(+)$1	1	18	47	17.3005
(((((.(((((........))))))))))	chr6:519093-519356(-)$1	1	123	152	15.0819
..(((((((((........)).)))))))	chr16:46931857-46932112(+)$1	1	144	173	16.2662
(((((.(((((........))))).))))	chr8:71314086-71314334(-)$1	1	166	195	16.4460
(((.(((((((........))))).))..	chr19:18716839-18717124(-)$1	1	17	46	14.8807
((((((((.((........))..))))))	chr7:1161105-1161393(-)$1	1	130	159	15.7121
(.(((((((((........))))))))).	chr20:60933621-60933873(-)$1	1	154	183	13.5877
((((((.((((........)))).)))))	chr7:1905502-1905742(-)$1	1	58	87	16.4322
(((((((((((........).))))))))	chr17:79962977-79963192(+)$1	1	100	129	17.1228
)(((((.((((........)))).)))))	chr9:133358645-133358960(+)$1	1	49	78	16.9136
(.....(.(((........))).)....)	chr19:1295928-1296187(+)$1	1	91	120	16.3000
((.(((.((((........))))))).))	chr11:70862056-70862327(-)$1	1	36	65	16.9960
((((((..(((........)))...))))	chr19:1434047-1434304(+)$1	1	164	193	17.3115
.(((.((((((........)))))).)))	chr19:13110809-13111050(+)$1	1	4	33	15.5805
((((((.((((........))))))))))	chr9:113018410-113018725(-)$1	1	183	212	17.4696
((((((.((((........)))).)..))	chr9:137281768-137281989(+)$1	1	56	85	16.3205
(((((...(((........)))...))))	chr1:2026275-2026523(+)$1	1	200	229	17.4112
(((((...(((........).)).)))))	chr7:2676967-2677226(+)$1	1	220	249	15.8500
)))(((((.(((........))).)))))	chrX:129118426-129118724(+)$1	1	133	162	14.3236
(((((..((((........)))).)))))	chr12:133532293-133532533(-)$1	1	2	31	17.2317
(..(((..(((........)))..)))..	chr1:116916135-116916361(+)$1	1	160	189	17.0436
(((.....(((........))))))))))	chr4:185393892-185394157(-)$1	1	85	114	15.0207
((..((.((((........)))).))..)	chr12:124995824-124996055(-)$1	1	199	228	16.0525
.(((((.(((.........))))))))..	chr2:242510488-242510825(+)$1	1	54	83	10.6665
(((((((((.(........).)))))...	chr9:38556692-38556996(-)$1	1	157	186	14.9139
(((.((.(((........))))).)))))	chr12:133087257-133087528(+)$1	1	109	138	14.0576
(((((.(((.(........)))).)))))	chr11:782484-782733(+)$1	1	3	32	17.5287
(((((.(((((........))))))))))	chr16:88811084-88811339(-)$1	1	97	126	16.9625
(.(((..((((........))))...)))	chr14:64970862-64971138(+)$1	1	20	49	17.6729
.(((....(((........)))....)))	chr20:35977661-35977900(+)$1	1	74	103	16.6656
((((..(.(((........))).)...))	chr7:100137250-100137536(+)$1	1	209	238	18.3632
(((((.(((((........)))))..)).	chr17:76777504-76777752(-)$1	1	75	104	14.7268
((....(((((........)))))...))	chr2:241568110-241568370(+)$1	1	18	47	16.8844
.(((((.(((........))).)))))((	chr16:88839869-88840084(-)$1	1	66	95	13.6068
(((((.(.(((........))).))))))	chr19:2135721-2136004(-)$1	1	26	55	16.1837
..((((...((........)).))))...	chr16:88583312-88583574(+)$1	1	36	65	15.0967
.((((.(((((........))))))))).	chr19:3360428-3360719(+)$1	1	223	252	15.7284
(((..((((((........))))))))))	chr9:136856136-136856432(-)$1	1	235	264	15.5753
((((((..(((........))).))))))	chr1:18014319-18014586(+)$1	1	75	104	18.1727
(.(((((.(((........))))))))))	chr4:8211611-8211876(+)$1	1	111	140	16.3768
((...((((((........))))))))))	chr19:3359660-3359926(+)$1	1	141	170	14.6894
((((..((((.........))))..))))	chr21:45141907-45142191(+)$1	1	118	147	10.4884
...((((.(((........))))))))))	chr22:50870939-50871215(+)$1	1	25	54	16.1051
.(((...((((........))))))).))	chr16:640162-640415(+)$1	1	175	204	17.0971
..)))).((((........))))((((((	chr2:241191105-241191372(-)$1	1	163	192	13.8846
.((((((..((........))))))))))	chr9:136741388-136741625(-)$1	1	37	66	15.1396
((.(.((((((........))))))).))	chr7:2249028-2249272(-)$1	1	204	233	15.6362

#PSSM
e : 0.14	g : 0.14	c : 0.10	f : 0.10	d : 0.07	" : 0.05	: : 0.05	! : 0.05	h : 0.05	[ : 0.05	b : 0.03	$ : 0.01	i : 0.01	E : 0.01	= : 0.01	2 : 0.01	# : 0.01	
e : 0.18	g : 0.16	d : 0.12	c : 0.12	f : 0.10	[ : 0.05	h : 0.05	! : 0.05	$ : 0.03	i : 0.01	: : 0.01	= : 0.01	" : 0.01	2 : 0.01	
e : 0.18	g : 0.16	d : 0.12	c : 0.10	f : 0.10	[ : 0.07	h : 0.05	$ : 0.03	i : 0.03	! : 0.03	" : 0.03	= : 0.01	# : 0.01	
e : 0.18	g : 0.16	c : 0.14	d : 0.10	f : 0.09	$ : 0.05	a : 0.03	i : 0.03	h : 0.03	[ : 0.03	! : 0.03	= : 0.01	b : 0.01	# : 0.01	" : 0.01	
e : 0.18	g : 0.14	d : 0.10	c : 0.09	f : 0.09	b : 0.07	[ : 0.05	! : 0.05	i : 0.03	h : 0.03	$ : 0.03	# : 0.03	" : 0.03	= : 0.01	
[ : 0.14	e : 0.12	f : 0.12	g : 0.10	! : 0.09	c : 0.07	b : 0.07	" : 0.05	d : 0.05	i : 0.03	$ : 0.03	# : 0.03	= : 0.01	a : 0.01	
e : 0.20	[ : 0.16	! : 0.12	f : 0.09	g : 0.07	a : 0.07	" : 0.07	c : 0.03	i : 0.03	d : 0.03	b : 0.01	= : 0.01	$ : 0.01	# : 0.01	: : 0.01	
d : 0.23	e : 0.18	[ : 0.12	! : 0.10	c : 0.09	f : 0.07	g : 0.05	" : 0.05	i : 0.01	= : 0.01	$ : 0.01	# : 0.01	
c : 0.32	d : 0.23	e : 0.16	f : 0.07	[ : 0.05	! : 0.03	g : 0.03	i : 0.01	= : 0.01	b : 0.01	" : 0.01	
c : 0.34	d : 0.23	e : 0.14	b : 0.10	f : 0.07	[ : 0.03	g : 0.01	i : 0.01	= : 0.01	
c : 0.29	d : 0.21	e : 0.14	b : 0.09	a : 0.07	f : 0.07	r : 0.03	q : 0.03	g : 0.01	i : 0.01	
q : 0.92	c : 0.03	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.92	r : 0.03	c : 0.03	
c : 0.30	d : 0.23	e : 0.14	b : 0.09	a : 0.07	f : 0.07	q : 0.03	g : 0.01	i : 0.01	
c : 0.36	d : 0.23	e : 0.14	b : 0.09	f : 0.07	] : 0.05	g : 0.01	i : 0.01	
c : 0.34	d : 0.23	e : 0.16	f : 0.09	] : 0.05	b : 0.03	g : 0.01	2 : 0.01	i : 0.01	= : 0.01	
d : 0.27	e : 0.21	] : 0.10	f : 0.09	c : 0.07	2 : 0.05	g : 0.03	3 : 0.03	b : 0.03	i : 0.01	= : 0.01	h : 0.01	4 : 0.01	
e : 0.21	] : 0.18	g : 0.10	f : 0.10	2 : 0.09	a : 0.07	c : 0.05	3 : 0.05	d : 0.03	i : 0.01	= : 0.01	h : 0.01	4 : 0.01	
e : 0.18	g : 0.14	f : 0.12	3 : 0.09	2 : 0.07	d : 0.07	] : 0.05	4 : 0.05	h : 0.05	c : 0.05	i : 0.03	= : 0.01	a : 0.01	b : 0.01	
e : 0.21	g : 0.14	d : 0.10	f : 0.09	c : 0.07	b : 0.05	4 : 0.05	h : 0.05	3 : 0.05	a : 0.03	i : 0.03	2 : 0.03	= : 0.01	] : 0.01	
e : 0.20	g : 0.12	f : 0.10	c : 0.09	d : 0.07	] : 0.07	b : 0.05	3 : 0.05	4 : 0.05	h : 0.05	i : 0.03	2 : 0.03	= : 0.01	8 : 0.01	
g : 0.18	e : 0.16	f : 0.12	c : 0.10	d : 0.09	2 : 0.07	4 : 0.05	h : 0.05	i : 0.03	b : 0.03	] : 0.01	3 : 0.01	= : 0.01	8 : 0.01	
g : 0.18	e : 0.16	c : 0.16	f : 0.14	2 : 0.07	d : 0.05	h : 0.05	] : 0.03	3 : 0.01	i : 0.01	: : 0.01	= : 0.01	8 : 0.01	4 : 0.01	b : 0.01	

#score	873.8274699919525
#seq	55
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_transcript_m1_run1.txt

#BEAR
cc####ccc!!ccccccmmmmccc]ccc22cccccc333	chr16:89812817-89813062(-)$1	245	52	91	16.9099
cc[dddd!!a!!eeeeemmmmeeeee4444a22dddd]c	chr21:46919090-46919414(+)$1	324	75	114	13.1446
ccc[bbeeeee[a[cccmmmmccc]a]eeeee4444bbc	chr6:33248025-33248269(-)$1	244	86	125	15.4115
dddggggggg####cccmmmmccc4444ggggggg::EE	chr10:81052037-81052288(+)$1	251	67	106	13.1798
ccc[ffffff!!eeeeemmmmeeeee]ffffff]ccc]d	chr17:79967000-79967265(+)$1	265	124	163	12.6288
ooddddggggggg[cccmmmmccc22gggggggeeeee!	chr17:48797123-48797373(+)$1	250	47	86	14.8071
iiiiiiiii####ddddmmmmdddd4444iiiiiiiii8	chr2:54885124-54885358(+)$1	234	128	167	16.5419
[dddd[bb[dddd[cccmmmmccc]dddd]bb22dddd]	chr17:38287766-38288046(+)$1	280	65	104	14.0354
iiiii[ccc$$$$$cccmmmmccc4444ccc]iiiiiii	chr11:66631071-66631316(-)$1	245	111	150	17.5792
=========!!ffffffmmmmffffff==========:e	chr2:3475552-3475851(+)$1	299	29	68	15.1513
====!!ccc"""ccc[ammmma]ccc333ccc=======	chr11:70253608-70253878(+)$1	270	130	169	17.4953
eeeee####dddd[cccmmmmcccddddeeeee]ddddf	chr6:74230519-74230780(-)$1	261	43	82	13.8242
=========[dddd[bbmmmmbb22dddd==========	chr11:1778372-1778608(-)$1	236	174	213	15.4240
dd"""a[ccc"""ddddmmmmddddccc]a4444dddd]	chr1:202976634-202976887(+)$1	253	136	175	14.6524
!!ggggggg[gggggggmmmmggggggg22gggggggee	chr2:111435332-111435629(-)$1	297	227	266	14.7052
=========cccrrrrrrrrrccc333==========22	chr7:43659249-43659512(+)$1	263	50	89	13.8927
gggg####eeeee[ccclllccceeeee]ggggggg22d	chr8:145634228-145634457(-)$1	229	75	114	13.3984
ggggggg[bb[aa[cccmmmmccc]a]a]bbgggggggd	chr16:16280794-16281053(-)$1	259	50	89	16.8505
iiiiiiiiibb[ddddaooooooa]dddd]bb]iiiiii	chr15:101967814-101968101(-)$1	287	123	162	12.7477
hhhhhheeeee"""cccmmmmccc333eeeee22hhhhh	chr9:123156615-123156867(-)$1	252	163	202	14.4773
dda"""eeeee[eeeeemmmmeeeeeeeeee333a]ddd	chr9:130931126-130931408(-)$1	282	100	139	12.9190
==========[ffffffmmmmffffff]==========:	chr2:231577941-231578186(+)$1	245	85	124	15.3504
g!!eeeee[ccc!!cccmmmmccc]ccceeeee4444gg	chr1:205497249-205497493(+)$1	244	21	60	16.2255
ccc[eeeee[ccc[cccmmmmcccccc333eeeee]ccc	chr5:883860-884140(-)$1	280	103	142	15.9601
b[ccc"""==========lll==========333ccc]b	chr6:132271286-132271501(-)$1	215	94	133	14.6296
a"""a[dddd[bb[cccmmmmccc]bb]dddd]a22a22	chr16:89958605-89958851(+)$1	246	109	148	14.3373
=======####a[ddddmmmmdddd]a==========::	chr19:926130-926377(+)$1	247	153	192	15.0674
fffff[ggggggg[a[aooooooa]a]gggggggfffff	chr17:79977529-79977772(-)$1	243	60	99	12.5323
ff[ggggggg[bb[cccmmmmccc]bb]gggggggffff	chr2:54856873-54857114(+)$1	241	66	105	15.9857
iiiiiiiii####ddddmmmmdddd4444iiiiiiiii8	chr2:54885111-54885324(+)$1	213	141	180	16.5419
eee"""ggggggg[cccmmmmccc]ggggggg]eeeee]	chr11:67048225-67048507(+)$1	282	134	173	16.5620
dd[gggggggccc[cccmmmmccc]ccc>>>>>>>>>>>	chr1:43396549-43396783(-)$1	234	137	176	14.5869
=========="""eeeeellleeeee22===========	chr3:48646399-48646661(-)$1	262	87	126	14.6036
eeee!!bbdddd!!cccmmmmcccdddd]bb333eeeee	chr9:139940130-139940387(-)$1	257	33	72	14.5157
h!!ccc[bbccc!!cccmmmmccc333ccc]bb]ccc22	chr3:186333547-186333766(+)$1	219	31	70	16.2261
============="""annnnna333=============	chr16:15221138-15221451(-)$1	313	235	274	15.4254
CCggggggg!!ccccccmmmmccc22ccc4444gggggg	chr12:6450710-6451026(-)$1	316	179	218	15.1294
:::==========cccooooooccc4444==========	chr17:79865241-79865524(-)$1	283	97	136	13.2636
dddd"""cccccc[ccclllccc22ccc4444cccdddd	chr22:20905698-20905978(+)$1	280	207	246	13.4999
ccc[iiiiiiiii[cccmmmmccciiiiiiiii]ccc]c	chr20:61540835-61541111(-)$1	276	142	181	17.9367
==========[a!!cccmmmmccc22a]==========c	chr9:139718031-139718296(+)$1	265	59	98	19.8739
cdddd[bbdddd!!cccmmmmccc333dddd]bb]dddd	chr13:114009417-114009716(-)$1	299	209	248	14.4542
c[dddd[cccddddcccmmmmccc]dddd4444ccc333	chr17:40540120-40540338(-)$1	218	8	47	15.3160
c[ccc!!ccc[gggggggmmmmggggggg]ccc]ccc]c	chr7:75610836-75611098(+)$1	262	208	247	13.3157
cccccccc[ddddddddmmmmdddd]dddd]ccc333cc	chr2:201694711-201694938(+)$1	227	106	145	13.1102
ffff!!ccc!!bb[cccmmmmccc]bb22ccc22fffff	chr22:39709478-39709699(-)$1	221	71	110	14.9843
:gggggggbbccc[cccmmmmccc]ccc]bb]ggggggg	chr2:61165543-61165788(-)$1	245	177	216	15.7025
ffffbb[ffffff[cccmmmmccc]ffffff]bb]ffff	chr12:125298527-125298825(-)$1	298	148	187	13.1607
=====eeeeeccc[cccmmmmccc333ccc]eeeee]==	chr9:125667180-125667466(-)$1	286	160	199	17.0854
=======[eeeee!!aooooooa22eeeee]========	chr6:31936794-31937051(+)$1	257	193	232	13.9496
gg####eeeee[a[cccmmmmccc333a]eeeee333gg	chr3:48466496-48466740(-)$1	244	179	218	17.2403
cggggggg[ccc[ddddmmmmddddccc]ggggggghhh	chr12:125478479-125478730(+)$1	251	66	105	14.6260

#otherMatches

#Seq PSSM
AAUUUUGACCUCUGCUCUGGUGGGUCAGCUGUCUUGUUU	chr16:89812817-89813062(-)$1	245	52	91	16.9099
CUGUGUCGGCAGUGGAGGGUAUUUCAGGGGGAAGACAAG	chr21:46919090-46919414(+)$1	324	75	114	13.1446
GGGUGAGAUCCCCCCCAUUGCUGGAGAGGGUCAGGUUCC	chr6:33248025-33248269(-)$1	244	86	125	15.4115
UAUGGACCGGUAAGGGUUCCCACUAAUCCUGGUCCAGCC	chr10:81052037-81052288(+)$1	251	67	106	13.1798
GCUUGUGCUGCCCGCUGUCCCCAGUGCCAGCACUGGCUC	chr17:79967000-79967265(+)$1	265	124	163	12.6288
CGUGCGGUGGGACCACGAGAGCGUAAGUCCCGCGGGCCU	chr17:48797123-48797373(+)$1	250	47	86	14.8071
CCAGGGAAUUCACACGAUUGCUUGUUUUUGUUUUUUGGG	chr2:54885124-54885358(+)$1	234	128	167	16.5419
UGGCUGGUGAGUAGAAUAGGAAUUGUGCUGGCUGGGCCU	chr17:38287766-38288046(+)$1	280	65	104	14.0354
CUUGGAGGGCCCCCUGACCGUUCACUUCCCCACCAAGGG	chr11:66631071-66631316(-)$1	245	111	150	17.5792
AGGGUCCUCACUUGGACUUGGGUCUGAGAGGAUCCUCAC	chr2:3475552-3475851(+)$1	299	29	68	15.1513
GAUGGAGCCCCAGGUGCAACAGGGCCCAUGGUCAUCUGU	chr11:70253608-70253878(+)$1	270	130	169	17.4953
GCCGCCAGAACACAGGUAAGUGCCGUGUGUGGUUCCCGC	chr6:74230519-74230780(-)$1	261	43	82	13.8242
UGACCUCUGACCUCAGGGCAUCCGGGAGGCGGGGGUUGG	chr11:1778372-1778608(-)$1	236	174	213	15.4240
CGAGGUGAGCGCUCGCGUGCCCGCGGCUGGAGGGCGGCU	chr1:202976634-202976887(+)$1	253	136	175	14.6524
CUGCUUGAGAGCCGGGGAGGGCUCCGGCACCUUGGGUUC	chr2:111435332-111435629(-)$1	297	227	266	14.7052
UAUGGGUACCCCUGAAUAUGUGGGUAAGUAUUCAUAAAA	chr7:43659249-43659512(+)$1	263	50	89	13.8927
GAGCCCUCCCCGCUGUccgcgacgugggugcucucaccg	chr8:145634228-145634457(-)$1	229	75	114	13.3984
AGACUCAAGUUCCUCUGGAAGCGGUGAGUGCUGAGUCUG	chr16:16280794-16281053(-)$1	259	50	89	16.8505
CCUGGGCCAGACGCAGCAGUGCCGUCUGUAUCAUGGCCC	chr15:101967814-101968101(-)$1	287	123	162	12.7477
AGCCCAGAUGGUUUGUAAUCAUGCCUCCUAUCUGUGGGC	chr9:123156615-123156867(-)$1	252	163	202	14.4773
GGCGGGCUUGGUGCUGGAUUCCCAGCCCAGGACAGACCU	chr9:130931126-130931408(-)$1	282	100	139	12.9190
CGGGGCUGCCUCCAUUUUCCUGGGUGGCGGCGGCCCCGG	chr2:231577941-231578186(+)$1	245	85	124	15.3504
GAGUACUCCACCCCCAUUGAUAUGUGGUGAGUGAGCACU	chr1:205497249-205497493(+)$1	244	21	60	16.2255
CACCGAGAGAGGGUGCCACGUGGCCCCAGACUCUCUGUG	chr5:883860-884140(-)$1	280	103	142	15.9601
AGGGUCGUGAUUCUCUCCCAGGGAGGGAGUCCUAACUGU	chr6:132271286-132271501(-)$1	215	94	133	14.6296
GGGUUGGGGGGCGUUGUCUGUGCACUGGCCCCGGUACAG	chr16:89958605-89958851(+)$1	246	109	148	14.3373
GUCCCCAAAGUUGGGCGGAGAUGUUGGUGGGGGUCCCGG	chr19:926130-926377(+)$1	247	153	192	15.0674
GGAGGUGGGUCCCCGUGUCUGUCCUCAGGGACCCUUUCC	chr17:79977529-79977772(-)$1	243	60	99	12.5323
GGUGAGCGGGGCGCUGGUCAGCCACUGGCCUGUUCCUUG	chr2:54856873-54857114(+)$1	241	66	105	15.9857
CCAGGGAAUUCACACGAUUGCUUGUUUUUGUUUUUUGGG	chr2:54885111-54885324(+)$1	213	141	180	16.5419
CCUUUAGCCCCCAGGGCCGUGGCUAUGGGGGUCAGGGCC	chr11:67048225-67048507(+)$1	282	134	173	16.5620
GUGGGAGGUAGGGGAGACUUAUCUGCCUGUUCCAGGGUA	chr1:43396549-43396783(-)$1	234	137	176	14.5869
GGGAGAGGGCCUCCAGGUUGGGCCUGCCGUCUUUUCCCU	chr3:48646399-48646661(-)$1	262	87	126	14.6036
cguggagccgccgccgGCCACCCGGGUGAGCGAGCGCGC	chr9:139940130-139940387(-)$1	257	33	72	14.5157
GAGCAUGUGAGUACCCUUCUUAGGAUGACUGUAGGUGGC	chr3:186333547-186333766(+)$1	219	31	70	16.2261
aaggcugcucgggaagggucaacacacuugagcagccuu	chr16:15221138-15221451(-)$1	313	235	274	15.4254
CCGGGCCUGGUCCUGGCGCCAGCCUCAGGCCUGCAGGUC	chr12:6450710-6451026(-)$1	316	179	218	15.1294
GAGUGCGGCUGUGCAGGGAGAGCUGAGCACGCAGCUGCA	chr17:79865241-79865524(-)$1	283	97	136	13.2636
GGGAAGUUCUUCACUGCCUUGCAUUUGACUCCAGAUCCC	chr22:20905698-20905978(+)$1	280	207	246	13.4999
GGACGGGUGCUGCACCCAUGUGGGGCGGUGCCUCUCCCG	chr20:61540835-61541111(-)$1	276	142	181	17.9367
GCAUCCACUGGAGCUACAAGAGUAAGUGUGGUGGGUGCC	chr9:139718031-139718296(+)$1	265	59	98	19.8739
CCUCCAUGAAAGAAUCAAAACUGAAGCCUUUGCAAGGGG	chr13:114009417-114009716(-)$1	299	209	248	14.4542
AGCCCCGGCCUCUCGGCCUCUGCCGGAGAAACAGGUGAA	chr17:40540120-40540338(-)$1	218	8	47	15.3160
UCGAGGAGGGACCUUGGUCCCAGCCAAGGACUCACUCUG	chr7:75610836-75611098(+)$1	262	208	247	13.3157
ucgugaagcguuccauauuuuuaugagaacacuuggaca	chr2:201694711-201694938(+)$1	227	106	145	13.1102
UCCUGACUUGUCAUGGGGGGGCUCUUGUAGAGGGAGGAU	chr22:39709478-39709699(-)$1	221	71	110	14.9843
ACAAGUGCCAAGCCCAUCUUUGUGUGCUGUGUGUGCUUG	chr2:61165543-61165788(-)$1	245	177	216	15.7025
CUGGUCACCAGCUUGCUUUGUAGCUGGCUGGGGAUCUAG	chr12:125298527-125298825(-)$1	298	148	187	13.1607
GCCCUGGGGCCUGUGCGCUGUCGCCCCUGGUGCCUCGAG	chr9:125667180-125667466(-)$1	286	160	199	17.0854
CUUCUUGAUCUGGUCCUUCCCUGUCCUGGAGCAGGAAGG	chr6:31936794-31937051(+)$1	257	193	232	13.9496
CCUGUUGGUUCUGUGGUUAUUACCCUUCUGGAUUCCUGG	chr3:48466496-48466740(-)$1	244	179	218	17.2403
GAAGGUgggcgccgggcccgcgcccgcggUCACCUUGCC	chr12:125478479-125478730(+)$1	251	66	105	14.6260

#DB
((....(((..((((((....))).)))..))))))...	chr16:89812817-89813062(-)$1	1	52	91	16.9099
((.((((..(..(((((....)))))....)..)))).)	chr21:46919090-46919414(+)$1	1	75	114	13.1446
(((.(((((((.(.(((....))).).)))))....)))	chr6:33248025-33248269(-)$1	1	86	125	15.4115
)))(((((((....(((....)))....)))))))..))	chr10:81052037-81052288(+)$1	1	67	106	13.1798
(((.((((((..(((((....))))).)))))).))).)	chr17:79967000-79967265(+)$1	1	124	163	12.6288
..))))(((((((.(((....)))..)))))))(((((.	chr17:48797123-48797373(+)$1	1	47	86	14.8071
(((((((((....((((....))))....))))))))).	chr2:54885124-54885358(+)$1	1	128	167	16.5419
.((((.((.((((.(((....))).)))).))..)))).	chr17:38287766-38288046(+)$1	1	65	104	14.0354
(((((.(((.....(((....)))....))).)))))))	chr11:66631071-66631316(-)$1	1	111	150	17.5792
(((((((((..((((((....)))))))))))))))).(	chr2:3475552-3475851(+)$1	1	29	68	15.1513
((((..(((...(((.(....).)))...))))))))))	chr11:70253608-70253878(+)$1	1	130	169	17.4953
(((((....((((.(((....)))))))))))).))))(	chr6:74230519-74230780(-)$1	1	43	82	13.8242
(((((((((.((((.((....))..))))))))))))))	chr11:1778372-1778608(-)$1	1	174	213	15.4240
((...(.(((...((((....))))))).)....)))).	chr1:202976634-202976887(+)$1	1	136	175	14.6524
..(((((((.(((((((....)))))))..)))))))))	chr2:111435332-111435629(-)$1	1	227	266	14.7052
((((((((((((.........)))...))))))))))..	chr7:43659249-43659512(+)$1	1	50	89	13.8927
((((....(((((.(((...)))))))).)))))))..)	chr8:145634228-145634457(-)$1	1	75	114	13.3984
(((((((.((.((.(((....))).).).))))))))))	chr16:16280794-16281053(-)$1	1	50	89	16.8505
(((((((((((.(((((......).)))).)).))))))	chr15:101967814-101968101(-)$1	1	123	162	12.7477
(((((((((((...(((....)))...)))))..)))))	chr9:123156615-123156867(-)$1	1	163	202	14.4773
(((...(((((.(((((....))))))))))...).)))	chr9:130931126-130931408(-)$1	1	100	139	12.9190
((((((((((.((((((....)))))).)))))))))).	chr2:231577941-231578186(+)$1	1	85	124	15.3504
(..(((((.(((..(((....))).))))))))....))	chr1:205497249-205497493(+)$1	1	21	60	16.2255
(((.(((((.(((.(((....))))))...))))).)))	chr5:883860-884140(-)$1	1	103	142	15.9601
(.(((...((((((((((...))))))))))...))).)	chr6:132271286-132271501(-)$1	1	94	133	14.6296
(...(.((((.((.(((....))).)).)))).)..)..	chr16:89958605-89958851(+)$1	1	109	148	14.3373
(((((((....(.((((....)))).)))))))))))..	chr19:926130-926377(+)$1	1	153	192	15.0674
(((((.(((((((.(.(......).).))))))))))))	chr17:79977529-79977772(-)$1	1	60	99	12.5323
((.(((((((.((.(((....))).)).)))))))))))	chr2:54856873-54857114(+)$1	1	66	105	15.9857
(((((((((....((((....))))....))))))))).	chr2:54885111-54885324(+)$1	1	141	180	16.5419
(((...(((((((.(((....))).))))))).))))).	chr11:67048225-67048507(+)$1	1	134	173	16.5620
((.((((((((((.(((....))).)))...........	chr1:43396549-43396783(-)$1	1	137	176	14.5869
((((((((((...(((((...)))))..)))))))))))	chr3:48646399-48646661(-)$1	1	87	126	14.6036
((((..((((((..(((....))))))).))...)))))	chr9:139940130-139940387(-)$1	1	33	72	14.5157
(..(((.(((((..(((....)))...))).)).)))..	chr3:186333547-186333766(+)$1	1	31	70	16.2261
(((((((((((((...(.....)...)))))))))))))	chr16:15221138-15221451(-)$1	1	235	274	15.4254
))(((((((..((((((....)))..)))....))))))	chr12:6450710-6451026(-)$1	1	179	218	15.1294
...(((((((((((((......)))....))))))))))	chr17:79865241-79865524(-)$1	1	97	136	13.2636
((((...((((((.(((...)))..)))....)))))))	chr22:20905698-20905978(+)$1	1	207	246	13.4999
(((.(((((((((.(((....)))))))))))).))).)	chr20:61540835-61541111(-)$1	1	142	181	17.9367
((((((((((.(..(((....)))..).))))))))))(	chr9:139718031-139718296(+)$1	1	59	98	19.8739
(((((.((((((..(((....)))...)))).)).))))	chr13:114009417-114009716(-)$1	1	209	248	14.4542
(.((((.((((((((((....))).))))....)))...	chr17:40540120-40540338(-)$1	1	8	47	15.3160
(.(((..(((.(((((((....))))))).))).))).)	chr7:75610836-75611098(+)$1	1	208	247	13.3157
((((((((.((((((((....)))).)))).)))...))	chr2:201694711-201694938(+)$1	1	106	145	13.1102
((((..(((..((.(((....))).))..)))..)))))	chr22:39709478-39709699(-)$1	1	71	110	14.9843
.((((((((((((.(((....))).))).)).)))))))	chr2:61165543-61165788(-)$1	1	177	216	15.7025
((((((.((((((.(((....))).)))))).)).))))	chr12:125298527-125298825(-)$1	1	148	187	13.1607
(((((((((((((.(((....)))...))).))))).))	chr9:125667180-125667466(-)$1	1	160	199	17.0854
(((((((.(((((..(......)..))))).))))))))	chr6:31936794-31937051(+)$1	1	193	232	13.9496
((....(((((.(.(((....)))...).)))))...))	chr3:48466496-48466740(-)$1	1	179	218	17.2403
)(((((((.(((.((((....))))))).)))))))(((	chr12:125478479-125478730(+)$1	1	66	105	14.6260

#PSSM
c : 0.21	= : 0.21	d : 0.09	i : 0.07	g : 0.07	f : 0.07	e : 0.05	h : 0.03	: : 0.03	o : 0.01	[ : 0.01	! : 0.01	b : 0.01	a : 0.01	C : 0.01	
= : 0.21	c : 0.13	d : 0.13	g : 0.09	i : 0.07	f : 0.07	e : 0.05	! : 0.05	[ : 0.05	o : 0.01	h : 0.01	" : 0.01	C : 0.01	: : 0.01	
= : 0.21	c : 0.13	d : 0.11	g : 0.11	i : 0.07	[ : 0.05	e : 0.05	f : 0.05	# : 0.03	" : 0.03	! : 0.03	h : 0.01	a : 0.01	: : 0.01	
= : 0.23	g : 0.17	d : 0.11	[ : 0.07	i : 0.07	" : 0.07	c : 0.07	e : 0.05	f : 0.05	# : 0.03	h : 0.01	
= : 0.21	g : 0.15	d : 0.09	i : 0.09	" : 0.07	c : 0.07	# : 0.05	! : 0.05	e : 0.05	b : 0.03	f : 0.03	h : 0.01	a : 0.01	
= : 0.19	g : 0.15	[ : 0.09	# : 0.07	i : 0.07	! : 0.07	" : 0.07	d : 0.05	e : 0.05	b : 0.03	c : 0.03	f : 0.01	a : 0.01	h : 0.01	
g : 0.21	= : 0.19	e : 0.13	c : 0.09	i : 0.07	[ : 0.07	b : 0.05	d : 0.03	# : 0.03	" : 0.03	f : 0.01	! : 0.01	
g : 0.19	c : 0.17	= : 0.15	e : 0.13	i : 0.07	b : 0.07	# : 0.05	f : 0.03	[ : 0.03	! : 0.01	" : 0.01	d : 0.01	
= : 0.17	c : 0.15	e : 0.15	g : 0.15	i : 0.07	[ : 0.07	b : 0.05	d : 0.05	f : 0.03	# : 0.03	! : 0.01	
c : 0.15	e : 0.13	g : 0.11	d : 0.11	= : 0.11	! : 0.07	# : 0.05	[ : 0.05	b : 0.05	f : 0.03	a : 0.01	$ : 0.01	" : 0.01	i : 0.01	
c : 0.17	d : 0.13	! : 0.11	e : 0.11	[ : 0.11	# : 0.07	g : 0.07	" : 0.05	= : 0.05	$ : 0.01	b : 0.01	i : 0.01	f : 0.01	
c : 0.21	d : 0.13	g : 0.09	[ : 0.07	" : 0.07	# : 0.05	f : 0.05	a : 0.05	= : 0.05	b : 0.05	! : 0.03	e : 0.03	$ : 0.01	i : 0.01	
c : 0.15	d : 0.11	e : 0.09	g : 0.09	! : 0.09	a : 0.05	# : 0.05	f : 0.05	" : 0.05	= : 0.05	b : 0.05	[ : 0.03	$ : 0.01	r : 0.01	i : 0.01	
[ : 0.36	d : 0.17	! : 0.11	c : 0.07	e : 0.07	f : 0.03	g : 0.03	" : 0.03	# : 0.01	$ : 0.01	r : 0.01	= : 0.01	
c : 0.59	d : 0.13	e : 0.07	f : 0.03	g : 0.03	[ : 0.01	r : 0.01	= : 0.01	a : 0.01	" : 0.01	! : 0.01	
c : 0.57	d : 0.13	e : 0.07	f : 0.03	[ : 0.03	g : 0.03	b : 0.01	r : 0.01	= : 0.01	" : 0.01	a : 0.01	
c : 0.55	d : 0.11	e : 0.07	a : 0.07	f : 0.03	g : 0.03	o : 0.03	b : 0.01	r : 0.01	= : 0.01	
m : 0.78	o : 0.07	l : 0.03	r : 0.01	= : 0.01	e : 0.01	n : 0.01	g : 0.01	
m : 0.80	l : 0.07	o : 0.07	r : 0.01	n : 0.01	
m : 0.80	l : 0.07	o : 0.07	r : 0.01	n : 0.01	
m : 0.80	o : 0.07	c : 0.03	l : 0.03	r : 0.01	n : 0.01	
c : 0.57	d : 0.11	e : 0.07	o : 0.07	f : 0.03	a : 0.01	b : 0.01	g : 0.01	= : 0.01	n : 0.01	m : 0.01	
c : 0.59	d : 0.11	e : 0.07	f : 0.03	g : 0.03	o : 0.03	a : 0.03	] : 0.01	b : 0.01	= : 0.01	
c : 0.57	d : 0.11	e : 0.09	2 : 0.05	f : 0.03	g : 0.03	a : 0.03	= : 0.01	3 : 0.01	
] : 0.28	d : 0.15	3 : 0.13	2 : 0.11	e : 0.09	c : 0.05	4 : 0.03	f : 0.03	g : 0.03	= : 0.01	i : 0.01	
c : 0.17	3 : 0.13	e : 0.11	d : 0.11	4 : 0.09	a : 0.05	2 : 0.05	f : 0.05	g : 0.05	b : 0.05	] : 0.03	= : 0.01	i : 0.01	
c : 0.17	d : 0.13	3 : 0.13	4 : 0.11	] : 0.07	g : 0.07	f : 0.05	e : 0.05	b : 0.05	= : 0.03	a : 0.03	2 : 0.01	i : 0.01	
c : 0.19	d : 0.15	4 : 0.11	e : 0.09	g : 0.09	= : 0.09	] : 0.07	f : 0.03	3 : 0.03	a : 0.03	2 : 0.03	i : 0.01	
= : 0.15	d : 0.13	] : 0.13	e : 0.11	g : 0.11	4 : 0.09	c : 0.07	2 : 0.05	f : 0.03	3 : 0.03	> : 0.01	i : 0.01	
= : 0.19	e : 0.13	g : 0.13	c : 0.09	4 : 0.07	i : 0.05	] : 0.05	b : 0.05	d : 0.05	2 : 0.03	f : 0.03	a : 0.01	3 : 0.01	> : 0.01	
= : 0.19	g : 0.15	e : 0.13	c : 0.09	b : 0.09	4 : 0.07	] : 0.07	i : 0.05	f : 0.03	d : 0.03	a : 0.01	> : 0.01	
= : 0.19	g : 0.17	e : 0.13	c : 0.09	] : 0.07	4 : 0.07	i : 0.05	b : 0.05	3 : 0.05	2 : 0.01	f : 0.01	d : 0.01	> : 0.01	
= : 0.21	g : 0.17	e : 0.09	c : 0.07	2 : 0.07	4 : 0.07	i : 0.07	] : 0.05	3 : 0.05	b : 0.05	f : 0.01	> : 0.01	
= : 0.21	g : 0.17	] : 0.09	e : 0.09	c : 0.07	i : 0.07	4 : 0.05	2 : 0.05	3 : 0.05	b : 0.03	d : 0.01	a : 0.01	> : 0.01	
= : 0.21	c : 0.15	g : 0.15	e : 0.09	d : 0.07	i : 0.07	4 : 0.03	f : 0.03	] : 0.03	3 : 0.03	h : 0.01	a : 0.01	2 : 0.01	> : 0.01	
= : 0.21	c : 0.13	d : 0.11	g : 0.11	e : 0.07	i : 0.07	f : 0.07	4 : 0.03	] : 0.03	3 : 0.03	: : 0.01	h : 0.01	2 : 0.01	> : 0.01	
= : 0.21	d : 0.13	c : 0.11	3 : 0.07	i : 0.07	g : 0.07	f : 0.07	e : 0.05	h : 0.03	b : 0.01	: : 0.01	2 : 0.01	4 : 0.01	a : 0.01	> : 0.01	] : 0.01	
= : 0.17	d : 0.11	] : 0.09	g : 0.09	e : 0.07	i : 0.07	2 : 0.07	f : 0.07	3 : 0.03	: : 0.03	h : 0.03	c : 0.03	b : 0.01	E : 0.01	> : 0.01	
c : 0.13	= : 0.13	d : 0.11	f : 0.09	g : 0.07	] : 0.05	e : 0.05	2 : 0.05	3 : 0.03	8 : 0.03	i : 0.03	h : 0.03	: : 0.03	E : 0.01	! : 0.01	b : 0.01	> : 0.01	

#score	780.9768516495792
#seq	52
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_CDS_m2_run1.txt

#BEAR
[eeeee!!annnnna22eeeee]f	chr19:45411818-45412074(+)$1	256	101	125	9.5734
dd!!eeeeeooooooeeeeedddd	chr20:60911307-60911584(-)$1	277	231	255	11.0050
GGGeeeeeooooooeeeeeeeeee	chr9:117027601-117027841(+)$1	240	54	78	8.7147
[a####eeeeellleeeee4444a	chr4:155507323-155507616(-)$1	293	220	244	8.6150
"gggggggoooooogggggggddd	chr17:80196513-80196750(+)$1	237	158	182	7.5365
xxxxxxxxxxxxxxxdddd]dddd	chr21:46897240-46897494(+)$1	254	104	128	9.1732
!!a[eeeeennnnneeeee]addd	chr11:116706886-116707131(-)$1	245	179	203	12.7695
:bb[eeeeennnnneeeee]bb:g	chr6:132271532-132271758(-)$1	226	79	103	10.2793
d"""eeeeennnnneeeeedddd2	chr21:46897591-46897830(+)$1	239	23	47	11.4929
cc[a[eeeeellleeeeea]ccc]	chr9:117052428-117052708(+)$1	280	230	254	9.0895
[ccc[ddddnnnnndddd]cccdd	chr9:116840313-116840548(-)$1	235	110	134	10.1194
dddaddddnnnnndddd]a]dddd	chr17:79813007-79813226(-)$1	219	56	80	8.8590
#bb[ddddoooooodddd22bb]d	chr9:116997779-116997987(+)$1	208	151	175	9.1762
:bb[eeeeennnnneeeeebbbbc	chr17:76969118-76969330(-)$1	212	89	113	9.9850
c[ccc[cccnnnnnccc]ccc]cc	chr6:31996928-31997183(+)$1	255	200	224	8.3270
:bb[eeeeennnnneeeee]bbGG	chr19:45411737-45412018(+)$1	281	185	209	9.7547
eeeexxxxxxxxxxxxxxxeeeee	chr10:73588673-73588936(-)$1	263	192	216	9.0075
eeeeerrrrrrrrreeeee]bb]a	chr21:46893716-46893959(+)$1	243	146	170	8.5618
eeeeerrrrrrrrreeeee]bb]i	chr21:46915235-46915447(+)$1	212	92	116	8.6086
ddd[eeeeeammmma]eeeeeddd	chr6:31962237-31962526(+)$1	289	47	71	8.4955
dddd!!cccooooooccc22dddd	chr1:236228189-236228456(-)$1	267	42	66	8.1990
eeeeeddddoooooodddd]eeee	chr2:220435304-220435574(-)$1	270	10	34	9.9616
ddd[eeeeennnnneeeee]dddd	chr9:117062261-117062503(+)$1	242	26	50	12.5991
ddd[eeeeennnnneeeee]dddd	chr10:95353489-95353694(-)$1	205	98	122	12.5991
bb[eeeeeooooooeeeee]bbee	chr1:19454029-19454320(-)$1	291	16	40	10.7344
eeeexxxxxxxxxxxxxxxeeeee	chr7:45928392-45928671(+)$1	279	205	229	9.0075
eee!!ddddoooooodddd22eee	chr6:43109569-43109847(+)$1	278	225	249	9.6849
dd[ccccccnnnnnccc]ccc333	chr19:45412200-45412458(+)$1	258	6	30	8.5037
ffff[ddddnnnnndddd]fffff	chr9:117027267-117027490(+)$1	223	142	166	8.9296
xxxxxxxxxxxxxxeeeee]eeee	chr9:117015063-117015311(+)$1	248	188	212	9.8897
eeeexxxxxxxxxxxxxxxeeeee	chr19:6686074-6686289(-)$1	215	38	62	9.0075
c[ccc[cccnnnnncccccc]ccc	chr12:57571133-57571354(+)$1	221	184	208	8.3139
ccc[eeeeennnnneeeee]ccc]	chr9:116958143-116958389(+)$1	246	200	224	12.2995
eee[ddddoooooodddd333eee	chr19:45411956-45412298(+)$1	342	15	39	10.1154
dd!!ccc[annnnna]ccc]dddd	chr9:117002399-117002642(+)$1	243	3	27	9.8428
eeeeerrrrrrrrreeeee]bb]i	chr21:46915171-46915394(+)$1	223	156	180	8.6086
dddd[ddddnnnnndddd]ddddb	chr17:76968194-76968440(-)$1	246	51	75	9.5812
ee[eeeeeooooooeeeee]eeee	chr1:182992853-182993090(+)$1	237	129	153	11.3752
c!!eeeeeooooooeeeee22ccc	chr11:75279995-75280319(+)$1	324	299	323	10.7261
d[bb[ddddnnnnndddd]bb]dd	chr8:144994933-144995169(-)$1	236	37	61	9.2872
eeeeeddddnnnnndddd>>>>>>	chr17:1655901-1656120(+)$1	219	118	142	9.2804
[bb[eeeeennnnneeeee]bbcc	chr19:45411893-45412148(+)$1	255	29	53	12.0199
gggggddddoooooodddd]gggg	chr17:1675093-1675352(+)$1	259	4	28	9.0796
ee[a[eeeeemmmmeeeee]aeee	chr1:980712-980969(+)$1	257	154	178	8.8796
!!eeeee!!allla22eeeee22d	chr1:985715-985954(+)$1	239	10	34	8.1605
bb!!ddddoooooodddd22bb]b	chr16:89839650-89839893(-)$1	243	199	223	8.8420
:bb[eeeeennnnneeeeebbbbc	chr17:76969076-76969292(-)$1	216	51	75	9.9850
eee!!ddddoooooodddd4444e	chr1:230846074-230846329(-)$1	255	221	245	9.8364
eee[eeeeeooooooeeeeeeeee	chr20:60885467-60885696(-)$1	229	140	164	11.0142
hhhhaddddnnnnndddd22a]hh	chr21:46910092-46910343(+)$1	251	161	185	9.0330
ddd[eeeeeooooooeeeee22dd	chr20:61461020-61461271(+)$1	251	189	213	10.4222
ccc!!ddddnnnnndddd22cccd	chr20:17601260-17601511(-)$1	251	177	201	10.6477
ii"""eeeeellleeeeeiiiiii	chr20:61460184-61460424(+)$1	240	196	220	8.5987
ddd[eeeeennnnneeeee]dddd	chr10:95353498-95353742(-)$1	244	146	170	12.5991

#otherMatches

#Seq PSSM
GGCGCGGACAUGGAGGACGUGUGC	chr19:45411818-45412074(+)$1	256	101	125	9.5734
GAACUGUGCCCACAAGUAUAUCCU	chr20:60911307-60911584(-)$1	277	231	255	11.0050
AGAAGGCCAUGGAGGGCCUAAGGU	chr9:117027601-117027841(+)$1	240	54	78	8.7147
AGAUAGCCCAGGCUCUGGGAACGC	chr4:155507323-155507616(-)$1	293	220	244	8.6150
CUUCUUCUGCAUUAGGAAGAAGCC	chr17:80196513-80196750(+)$1	237	158	182	7.5365
GAUUCUGUCUCCACGUGGGACGGG	chr21:46897240-46897494(+)$1	254	104	128	9.1732
GACGACUUCCAGAAGAAGUGGCAG	chr11:116706886-116707131(-)$1	245	179	203	12.7695
AGAUGGUGCUCCCUGCAUCUUCGG	chr6:132271532-132271758(-)$1	226	79	103	10.2793
UGUGUGGGGCCCCACCCCAGCCCG	chr21:46897591-46897830(+)$1	239	23	47	11.4929
GUGUAGGGGAACUUCCCCAGGCCA	chr9:117052428-117052708(+)$1	280	230	254	9.0895
AGCGCUGGCCCUGUGCCAACGCCG	chr9:116840313-116840548(-)$1	235	110	134	10.1194
UCCCUCCUCAUUCAGGACGUGGAG	chr17:79813007-79813226(-)$1	219	56	80	8.8590
AGGUAAUUGCAUGAGAUUUUCCCC	chr9:116997779-116997987(+)$1	208	151	175	9.1762
UUGACAGCCAGCGGGGCUGCGACC	chr17:76969118-76969330(-)$1	212	89	113	9.9850
GGCUCUGGCAGUGAGCCUGAGGCC	chr6:31996928-31997183(+)$1	255	200	224	8.3270
GCGGACAUGGAGGACGUGUGCGGC	chr19:45411737-45412018(+)$1	281	185	209	9.7547
UCCAAUAAGAUCCCAGAGCUGGAC	chr10:73588673-73588936(-)$1	263	192	216	9.0075
UGCCUGGACGAGGAAGGCGAUGAC	chr21:46893716-46893959(+)$1	243	146	170	8.5618
CCUUGGAUUUGGCAUGAGGGUGAG	chr21:46915235-46915447(+)$1	212	92	116	8.6086
ACGUGUCCCCAGUGGAGGGGCUGU	chr6:31962237-31962526(+)$1	289	47	71	8.4955
GCGGGACCGGGUUUGCGGGACCGC	chr1:236228189-236228456(-)$1	267	42	66	8.1990
CUCACGGGGCCUCGAUCCCAGUGG	chr2:220435304-220435574(-)$1	270	10	34	9.9616
UGGCUGGCGGGACACGCUGACCAU	chr9:117062261-117062503(+)$1	242	26	50	12.5991
GCUGAUCGUCCACAACGGUGAGUC	chr10:95353489-95353694(-)$1	205	98	122	12.5991
GGGAUCUUGUUCAGAGGAUGCCUC	chr1:19454029-19454320(-)$1	291	16	40	10.7344
CAGGUACCACAGUcccgccccugc	chr7:45928392-45928671(+)$1	279	205	229	9.0075
UGGACCCCACCAAGCUGGGACCCA	chr6:43109569-43109847(+)$1	278	225	249	9.6849
CCAGCCGCUACAGGAGCGGGCCCA	chr19:45412200-45412458(+)$1	258	6	30	8.5037
GAAAUUCUCUACAUGGGGCUUUUG	chr9:117027267-117027490(+)$1	223	142	166	8.9296
UCAGAUAAGGGUUAGGUggcuggg	chr9:117015063-117015311(+)$1	248	188	212	9.8897
GCCACAUCCUAUGCCCUCUUGGCC	chr19:6686074-6686289(-)$1	215	38	62	9.0075
GCCCAACGGGCUCACCGUGGACUA	chr12:57571133-57571354(+)$1	221	184	208	8.3139
CAGGUCUUCAGGCAGAAGAGCUGU	chr9:116958143-116958389(+)$1	246	200	224	12.2995
UGCAGGCCAUGCUCGGCCAGAGCA	chr19:45411956-45412298(+)$1	342	15	39	10.1154
augagauggaaacccggucagucu	chr9:117002399-117002642(+)$1	243	3	27	9.8428
CCUUGGAUUUGGCAUGAGGGUGAG	chr21:46915171-46915394(+)$1	223	156	180	8.6086
GUGGAGAAGAUCCGCUUCCCCAUG	chr17:76968194-76968440(-)$1	246	51	75	9.5812
CGGGCGGCCGCAGCGCUGCAUGCC	chr1:182992853-182993090(+)$1	237	129	153	11.3752
GCAGGUCUGUCCCAAGACCCCCUG	chr11:75279995-75280319(+)$1	324	299	323	10.7261
GAGAAGAUCAUCAAGAUCAUCAUC	chr8:144994933-144995169(-)$1	236	37	61	9.2872
GGUCCGGCUGCCUAAGCUGUAUCU	chr17:1655901-1656120(+)$1	219	118	142	9.2804
GCGGACAUGGAGGACGUGUGCGGC	chr19:45411893-45412148(+)$1	255	29	53	12.0199
CAGGCUCUCAAAGACGGGAUGCUU	chr17:1675093-1675352(+)$1	259	4	28	9.0796
CGAGGCAUCGUCACCGAUGGCCGG	chr1:980712-980969(+)$1	257	154	178	8.8796
CAGGGGGAAGGGCCGGCCCCCACC	chr1:985715-985954(+)$1	239	10	34	8.1605
CCCAGCCAGCGUGAUGGUGAGGAU	chr16:89839650-89839893(-)$1	243	199	223	8.8420
UUGACAGCCAGCGGGGCUGCGACC	chr17:76969076-76969292(-)$1	216	51	75	9.9850
UGUUCCUUGGAAGGACAAGAACUG	chr1:230846074-230846329(-)$1	255	221	245	9.8364
AUGGCAGGGGUCACACCCUGCAUC	chr20:60885467-60885696(-)$1	229	140	164	11.0142
GCCCCAGGUGAGUUGCCUUGGUGG	chr21:46910092-46910343(+)$1	251	161	185	9.0330
CUGAGCCAUUGGCACAUGGCCCCA	chr20:61461020-61461271(+)$1	251	189	213	10.4222
GGCGCCGUGGAGCACAUGAAGCCC	chr20:17601260-17601511(-)$1	251	177	201	10.6477
CAGUGGCCCAUGUUGGGCUGGGUG	chr20:61460184-61460424(+)$1	240	196	220	8.5987
GCUGAUCGUCCACAACGGUGAGUC	chr10:95353498-95353742(-)$1	244	146	170	12.5991

#DB
.(((((..(.....)..))))).)	chr19:45411818-45412074(+)$1	1	101	125	9.5734
((..(((((......)))))))))	chr20:60911307-60911584(-)$1	1	231	255	11.0050
((((((((......)))))(((((	chr9:117027601-117027841(+)$1	1	54	78	8.7147
.(....(((((...)))))....)	chr4:155507323-155507616(-)$1	1	220	244	8.6150
.(((((((......))))))))))	chr17:80196513-80196750(+)$1	1	158	182	7.5365
...............)))).))))	chr21:46897240-46897494(+)$1	1	104	128	9.1732
..(.(((((.....))))).))))	chr11:116706886-116707131(-)$1	1	179	203	12.7695
.((.(((((.....))))).)).(	chr6:132271532-132271758(-)$1	1	79	103	10.2793
(...(((((.....))))))))).	chr21:46897591-46897830(+)$1	1	23	47	11.4929
((.(.(((((...)))))).))).	chr9:117052428-117052708(+)$1	1	230	254	9.0895
.(((.((((.....)))).)))))	chr9:116840313-116840548(-)$1	1	110	134	10.1194
((((((((.....)))).).))))	chr17:79813007-79813226(-)$1	1	56	80	8.8590
.((.((((......))))..)).)	chr9:116997779-116997987(+)$1	1	151	175	9.1762
.((.(((((.....)))))))(((	chr17:76969118-76969330(-)$1	1	89	113	9.9850
(.(((.(((.....))).))).))	chr6:31996928-31997183(+)$1	1	200	224	8.3270
.((.(((((.....))))).))))	chr19:45411737-45412018(+)$1	1	185	209	9.7547
((((...............)))))	chr10:73588673-73588936(-)$1	1	192	216	9.0075
(((((.........))))).)).)	chr21:46893716-46893959(+)$1	1	146	170	8.5618
(((((.........))))).)).)	chr21:46915235-46915447(+)$1	1	92	116	8.6086
(((.((((((....).))))))))	chr6:31962237-31962526(+)$1	1	47	71	8.4955
((((..(((......)))..))))	chr1:236228189-236228456(-)$1	1	42	66	8.1990
(((((((((......)))).))))	chr2:220435304-220435574(-)$1	1	10	34	9.9616
(((.(((((.....))))).))))	chr9:117062261-117062503(+)$1	1	26	50	12.5991
(((.(((((.....))))).))))	chr10:95353489-95353694(-)$1	1	98	122	12.5991
((.(((((......))))).))))	chr1:19454029-19454320(-)$1	1	16	40	10.7344
((((...............)))))	chr7:45928392-45928671(+)$1	1	205	229	9.0075
(((..((((......))))..)))	chr6:43109569-43109847(+)$1	1	225	249	9.6849
((.((((((.....))).)))...	chr19:45412200-45412458(+)$1	1	6	30	8.5037
((((.((((.....)))).)))))	chr9:117027267-117027490(+)$1	1	142	166	8.9296
..............))))).))))	chr9:117015063-117015311(+)$1	1	188	212	9.8897
((((...............)))))	chr19:6686074-6686289(-)$1	1	38	62	9.0075
(.(((.(((.....)))))).)))	chr12:57571133-57571354(+)$1	1	184	208	8.3139
(((.(((((.....))))).))).	chr9:116958143-116958389(+)$1	1	200	224	12.2995
(((.((((......))))...)))	chr19:45411956-45412298(+)$1	1	15	39	10.1154
((..(((.(.....).))).))))	chr9:117002399-117002642(+)$1	1	3	27	9.8428
(((((.........))))).)).)	chr21:46915171-46915394(+)$1	1	156	180	8.6086
((((.((((.....)))).))))(	chr17:76968194-76968440(-)$1	1	51	75	9.5812
((.(((((......))))).))))	chr1:182992853-182993090(+)$1	1	129	153	11.3752
(..(((((......)))))..)))	chr11:75279995-75280319(+)$1	1	299	323	10.7261
(.((.((((.....)))).)).))	chr8:144994933-144995169(-)$1	1	37	61	9.2872
(((((((((.....))))......	chr17:1655901-1656120(+)$1	1	118	142	9.2804
.((.(((((.....))))).))))	chr19:45411893-45412148(+)$1	1	29	53	12.0199
(((((((((......)))).))))	chr17:1675093-1675352(+)$1	1	4	28	9.0796
((.(.(((((....))))).))))	chr1:980712-980969(+)$1	1	154	178	8.8796
..(((((..(...)..)))))..)	chr1:985715-985954(+)$1	1	10	34	8.1605
((..((((......))))..)).)	chr16:89839650-89839893(-)$1	1	199	223	8.8420
.((.(((((.....)))))))(((	chr17:76969076-76969292(-)$1	1	51	75	9.9850
(((..((((......))))....)	chr1:230846074-230846329(-)$1	1	221	245	9.8364
(((.(((((......)))))))))	chr20:60885467-60885696(-)$1	1	140	164	11.0142
(((((((((.....))))..).))	chr21:46910092-46910343(+)$1	1	161	185	9.0330
(((.(((((......)))))..))	chr20:61461020-61461271(+)$1	1	189	213	10.4222
(((..((((.....))))..)))(	chr20:17601260-17601511(-)$1	1	177	201	10.6477
((...(((((...)))))))))))	chr20:61460184-61460424(+)$1	1	196	220	8.5987
(((.(((((.....))))).))))	chr10:95353498-95353742(-)$1	1	146	170	12.5991

#PSSM
e : 0.25	d : 0.24	c : 0.11	[ : 0.07	: : 0.07	x : 0.03	! : 0.03	b : 0.03	G : 0.01	" : 0.01	# : 0.01	f : 0.01	g : 0.01	h : 0.01	i : 0.01	
e : 0.27	d : 0.20	b : 0.14	c : 0.07	! : 0.05	[ : 0.05	g : 0.03	x : 0.03	G : 0.01	a : 0.01	" : 0.01	f : 0.01	h : 0.01	i : 0.01	
e : 0.25	d : 0.14	b : 0.12	[ : 0.09	c : 0.09	! : 0.07	g : 0.03	x : 0.03	" : 0.03	G : 0.01	# : 0.01	a : 0.01	f : 0.01	h : 0.01	
[ : 0.27	e : 0.25	! : 0.11	c : 0.07	a : 0.05	g : 0.03	x : 0.03	" : 0.03	d : 0.03	# : 0.01	f : 0.01	b : 0.01	h : 0.01	
e : 0.48	[ : 0.11	x : 0.09	d : 0.07	c : 0.07	! : 0.07	g : 0.03	# : 0.01	a : 0.01	" : 0.01	
e : 0.44	d : 0.27	x : 0.09	r : 0.05	[ : 0.03	c : 0.03	# : 0.01	g : 0.01	! : 0.01	
e : 0.44	d : 0.27	x : 0.09	c : 0.09	r : 0.05	! : 0.01	g : 0.01	
e : 0.42	d : 0.27	x : 0.09	c : 0.07	r : 0.05	! : 0.03	g : 0.01	[ : 0.01	
e : 0.35	d : 0.20	o : 0.14	x : 0.09	c : 0.07	r : 0.05	a : 0.03	n : 0.01	! : 0.01	
n : 0.44	o : 0.29	x : 0.09	e : 0.07	r : 0.05	a : 0.03	
n : 0.44	o : 0.29	x : 0.09	l : 0.05	r : 0.05	m : 0.03	e : 0.01	
n : 0.44	o : 0.29	x : 0.09	l : 0.07	r : 0.05	m : 0.03	
n : 0.44	o : 0.29	x : 0.09	l : 0.07	r : 0.05	m : 0.03	
n : 0.42	o : 0.29	x : 0.09	r : 0.05	e : 0.03	m : 0.03	l : 0.01	d : 0.01	a : 0.01	
e : 0.42	d : 0.20	o : 0.14	x : 0.07	a : 0.05	c : 0.05	g : 0.01	2 : 0.01	
e : 0.48	d : 0.29	c : 0.07	x : 0.05	2 : 0.03	] : 0.03	g : 0.01	
e : 0.51	d : 0.29	c : 0.09	x : 0.05	2 : 0.01	g : 0.01	
e : 0.53	d : 0.27	] : 0.05	x : 0.05	c : 0.05	g : 0.01	
e : 0.49	d : 0.09	2 : 0.09	] : 0.07	c : 0.07	x : 0.05	a : 0.03	g : 0.01	3 : 0.01	> : 0.01	i : 0.01	
] : 0.38	e : 0.18	2 : 0.12	c : 0.07	b : 0.05	4 : 0.03	d : 0.03	g : 0.01	f : 0.01	3 : 0.01	> : 0.01	i : 0.01	
b : 0.22	e : 0.20	d : 0.18	c : 0.11	a : 0.05	2 : 0.05	4 : 0.03	g : 0.03	f : 0.01	] : 0.01	3 : 0.01	> : 0.01	i : 0.01	
d : 0.24	e : 0.22	b : 0.20	c : 0.11	] : 0.05	4 : 0.03	2 : 0.03	3 : 0.01	f : 0.01	> : 0.01	g : 0.01	i : 0.01	
d : 0.29	e : 0.22	c : 0.12	] : 0.11	4 : 0.03	b : 0.03	: : 0.01	G : 0.01	3 : 0.01	f : 0.01	> : 0.01	g : 0.01	2 : 0.01	h : 0.01	i : 0.01	
d : 0.31	e : 0.24	c : 0.11	i : 0.05	f : 0.03	a : 0.03	g : 0.03	] : 0.03	b : 0.03	2 : 0.01	G : 0.01	3 : 0.01	> : 0.01	h : 0.01	

#score	526.8113187490816
#seq	54
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF821EXR_HNRNPUL1_transcript_m2_run1.txt

#BEAR
ccc[bb[cccmmmmccc]bb]ccc	chr19:1409153-1409409(+)$1	256	214	238	10.1855
ffffff!!bbmmmmbb333fffff	chr7:98479382-98479607(+)$1	225	100	124	11.1234
[eeeee!!bbmmmmbb22eeeee]	chr5:179046691-179046929(-)$1	238	3	27	9.3778
a[dddd[cccmmmmcccddddabb	chr16:31199251-31199476(+)$1	225	103	127	8.6680
$a[ccc[cccmmmmccc333ccc]	chr22:50011824-50012082(-)$1	258	154	178	12.2008
!!ccc!!cccnnnnnccc22ccc2	chr6:26988114-26988325(+)$1	211	84	108	9.3964
gggg[a!!ccclllccc22a]ggg	chr22:50013563-50013832(-)$1	269	146	170	11.1007
dd$$$$$cccmmmmccc333dddd	chr19:5092050-5092299(+)$1	249	122	146	10.2545
ggggg"""bbmmmmbb333ggggg	chr17:16342999-16343322(+)$1	323	214	238	12.6016
eeee####bbmmmmbb4444eeee	chr22:50018557-50018800(-)$1	243	32	56	10.4415
gggggg[cccnnnnnccc22gggg	chrX:135961291-135961495(-)$1	204	47	71	10.0180
ccc[bb[cccmmmmccc]bbccc3	chr18:47340345-47340638(+)$1	293	135	159	10.2237
[gggggggccclllccc]gggggg	chr16:31199378-31199623(+)$1	245	119	143	10.3017
iiiiiiiiiooooooiiiiiiiii	chr11:93454808-93455010(+)$1	202	43	67	9.7690
ffffff!!bbmmmmbb333fffff	chr7:98479339-98479543(+)$1	204	143	167	11.1234
cccgggggggmmmmggggggg]cc	chr11:65193577-65193814(+)$1	237	129	153	9.7821
gggggg[cccmmmmcccggggggg	chr16:31197545-31197814(+)$1	269	55	79	11.8643
hhh"""ddddmmmmdddd22hhhh	chr16:31198279-31198547(+)$1	268	61	85	8.8034
##dddd[cccmmmmccc22dddd4	chr19:1411653-1411898(+)$1	245	118	142	10.0295
ccc"""ddddmmmmdddd4444cc	chr2:203141070-203141335(+)$1	265	98	122	9.1534
iiiiiiiiiooooooiiiiiiiii	chr13:114160796-114161086(+)$1	290	242	266	9.7690
gggggg[cccmmmmccc22ggggg	chr2:101889298-101889531(-)$1	233	48	72	12.6246
dddd"""cccmmmmccc333dddd	chr11:65193628-65193882(+)$1	254	208	232	11.3417
"iiiiiiiiillliiiiiiiii]g	chr7:98479281-98479497(+)$1	216	19	43	9.7363
gggggg[cccmmmmccc]gggggg	chr22:50010501-50010784(-)$1	283	16	40	12.1750
hhh"""ddddmmmmdddd22hhhh	chr16:31198156-31198455(+)$1	299	184	208	8.8034
eeee####bbmmmmbb4444eeee	chr22:50018600-50018914(-)$1	314	146	170	10.4415
==========mmmm==========	chrX:20154123-20154425(-)$1	302	61	85	11.9354
ffffff!!bbmmmmbb333fffff	chr7:98479372-98479575(+)$1	203	110	134	11.1234
fffff[ddddmmmmdddd333fff	chr10:101996766-101996995(-)$1	229	201	225	9.6065
ffffff!!bbmmmmbb22ffffff	chr22:49980951-49981248(-)$1	297	59	83	9.7560
$iiiiiiiiimmmmiiiiiiiii5	chr11:93454833-93455042(+)$1	209	19	43	10.0817
!!ccc!!cccmmmmccc22ccc22	chr2:232324973-232325188(-)$1	215	57	81	11.5902
ggiiiiiiiiillliiiiiiiiie	chr1:76255091-76255305(+)$1	214	141	165	9.9025
!!ccc!!cccnnnnnccc22ccc2	chr17:16342932-16343185(+)$1	253	39	63	9.3964
iiiiiiiiiooooooiiiiiiiii	chr11:93454810-93455024(+)$1	214	41	65	9.7690
ffffff!!bbmmmmbb333fffff	chr7:98479356-98479564(+)$1	208	126	150	11.1234
gggggg[cccnnnnnccc22gggg	chrX:135961303-135961532(-)$1	229	84	108	10.0180
:gggggggccclllccc]gggggg	chr11:93465400-93465603(-)$1	203	92	116	9.0898
ggggg!!cccooooooccc]gggg	chr22:50021715-50021956(-)$1	241	88	112	10.1357
bb[ddddcccmmmmccc]dddd]b	chr19:37500410-37500647(+)$1	237	167	191	8.4248
==========mmmm==========	chr11:65192489-65192730(+)$1	241	31	55	11.9354
ffffff!!bbmmmmbb333fffff	chr7:98479364-98479572(+)$1	208	118	142	11.1234
======[bbnnnnnbb]=======	chr12:6619568-6619780(+)$1	212	6	30	9.2015
ffffff!!bbmmmmbb333fffff	chr7:98479343-98479556(+)$1	213	139	163	11.1234
[ccc"""cccmmmmccc333cccd	chr11:62621998-62622203(-)$1	205	29	53	12.7585
ffffff[cccmmmmcccffffffb	chr22:50011586-50011836(-)$1	250	136	160	9.8539
iiiii!!cccmmmmccc333iiii	chr22:49993486-49993741(-)$1	255	210	234	13.7685
iiiiiiiiinnnnniiiiiiiiig	chr11:65192531-65192778(+)$1	247	42	66	9.0035
ggiiiiiiiiillliiiiiiiiie	chr1:76255105-76255329(+)$1	224	127	151	9.9025
==========4444==========	chr3:52724676-52724938(+)$1	262	156	180	9.3741
iiiii[ddddmmmmdddd333iii	chr10:101996707-101996945(-)$1	238	151	175	10.7749
iiiii[ddddmmmmdddd333iii	chr10:101996745-101996966(-)$1	221	172	196	10.7749
[dddd!!cccmmmmccc22dddde	chr10:3176320-3176590(+)$1	270	179	203	10.6274
iiiii!!bboooooobb]iiiiii	chr5:34192095-34192338(-)$1	243	11	35	9.8128
eeee####ccclllccc333eeee	chr3:160232804-160233033(-)$1	229	91	115	10.3770
:ffffffcccmmmmccc4444fff	chr22:50027944-50028194(-)$1	250	76	100	9.6667

#otherMatches

#Seq PSSM
GGAGAGAGGUGAGGGCUCCUGUCC	chr19:1409153-1409409(+)$1	256	214	238	10.1855
CAGUCAAACUGAUAAGAUCUGAUU	chr7:98479382-98479607(+)$1	225	100	124	11.1234
UGAUUGUGCUGUGUAGAUCAGUUU	chr5:179046691-179046929(-)$1	238	3	27	9.3778
GUGCUGAGGACAUUUCCCAGCCUG	chr16:31199251-31199476(+)$1	225	103	127	8.6680
AGGCUCUCAGGACUCUGCAUGAGG	chr22:50011824-50012082(-)$1	258	154	178	12.2008
uucgagccucaccuggagcaUUGU	chr6:26988114-26988325(+)$1	211	84	108	9.3964
aggaggcuggcgaugccuucgucc	chr22:50013563-50013832(-)$1	269	146	170	11.1007
GGAGUGGUCUGGAAAGAAGGCCUC	chr19:5092050-5092299(+)$1	249	122	146	10.2545
GCAUUUAAAGCAAACUGAUAAUGC	chr17:16342999-16343322(+)$1	323	214	238	12.6016
CCCAAAGGUGGAAGCAGGGAUGGG	chr22:50018557-50018800(-)$1	243	32	56	10.4415
AUUAUAAUUAAAAUAUAAGCUAUG	chrX:135961291-135961495(-)$1	204	47	71	10.0180
GUGAUUGUAGUAGGCUAGGGCGCU	chr18:47340345-47340638(+)$1	293	135	159	10.2237
GGAGUGAGGCUGUGAGCACUUACU	chr16:31199378-31199623(+)$1	245	119	143	10.3017
guguguguguguguguACGCACAU	chr11:93454808-93455010(+)$1	202	43	67	9.7690
CAGUCAAACUGAUAAGAUCUGAUU	chr7:98479339-98479543(+)$1	204	143	167	11.1234
CAUUUUUUAAAUGUUUAAAAAUAU	chr11:65193577-65193814(+)$1	237	129	153	9.7821
GACAGAGCUUAGCUAAGUUUGUCU	chr16:31197545-31197814(+)$1	269	55	79	11.8643
GGGUAAGACUCAAUAGUCAUCUUU	chr16:31198279-31198547(+)$1	268	61	85	8.8034
ccggagcugggaguccacacuccu	chr19:1411653-1411898(+)$1	245	118	142	10.0295
GAUGUAUUCUUCUUGGAACUGAAU	chr2:203141070-203141335(+)$1	265	98	122	9.1534
CUAGAAGGCUCCAGUGUCUUCUGG	chr13:114160796-114161086(+)$1	290	242	266	9.7690
AAUUGCAGUGUCUCCAUCAGCAGU	chr2:101889298-101889531(-)$1	233	48	72	12.6246
UCGGGUAUGCUGUUGUGAAAUUGA	chr11:65193628-65193882(+)$1	254	208	232	11.3417
UUUUCUCUACCUUGUAGAGAAGCA	chr7:98479281-98479497(+)$1	216	19	43	9.7363
GGCCUCAGAGACAACUUCGGGGCC	chr22:50010501-50010784(-)$1	283	16	40	12.1750
GGGUAAGACUCAAUAGUCAUCUUU	chr16:31198156-31198455(+)$1	299	184	208	8.8034
CCCAAAGGUGGAAGCAGGGAUGGG	chr22:50018600-50018914(-)$1	314	146	170	10.4415
GUGUGUGUGUGUGUGCACGCACAC	chrX:20154123-20154425(-)$1	302	61	85	11.9354
CAGUCAAACUGAUAAGAUCUGAUU	chr7:98479372-98479575(+)$1	203	110	134	11.1234
AGAGACUGUGCAGGCACAACUUCU	chr10:101996766-101996995(-)$1	229	201	225	9.6065
GGCCUGGGCUGGGGAGGGCGGGCC	chr22:49980951-49981248(-)$1	297	59	83	9.7560
uguguguguguguguACGCACAUG	chr11:93454833-93455042(+)$1	209	19	43	10.0817
AAGGGACUUAAUACUGAAACCUGA	chr2:232324973-232325188(-)$1	215	57	81	11.5902
UGGAGGGUAAAAUUUUUAUCUUCA	chr1:76255091-76255305(+)$1	214	141	165	9.9025
AGAUUGCGUACCCACUGCAGAGUG	chr17:16342932-16343185(+)$1	253	39	63	9.3964
guguguguguguguguACGCACAU	chr11:93454810-93455024(+)$1	214	41	65	9.7690
CAGUCAAACUGAUAAGAUCUGAUU	chr7:98479356-98479564(+)$1	208	126	150	11.1234
AUUAUAAUUAAAAUAUAAGCUAUG	chrX:135961303-135961532(-)$1	229	84	108	10.0180
CAGAGUGUUCAGUUUGAUAUACUC	chr11:93465400-93465603(-)$1	203	92	116	9.0898
GGUGGCAGAUGUGGGGGUCCCUGC	chr22:50021715-50021956(-)$1	241	88	112	10.1357
guuucagugaauuuucagcugaca	chr19:37500410-37500647(+)$1	237	167	191	8.4248
AAUUCUCUGGGGCUUUGGGGAAUU	chr11:65192489-65192730(+)$1	241	31	55	11.9354
CAGUCAAACUGAUAAGAUCUGAUU	chr7:98479364-98479572(+)$1	208	118	142	11.1234
UUGCUGGAGAGAAAUUGUGGUAAC	chr12:6619568-6619780(+)$1	212	6	30	9.2015
CAGUCAAACUGAUAAGAUCUGAUU	chr7:98479343-98479556(+)$1	213	139	163	11.1234
CGUUACUGUCAGAUGAUUUGAAUU	chr11:62621998-62622203(-)$1	205	29	53	12.7585
GGCAGCAUCCCGGGGGAGCUGCUC	chr22:50011586-50011836(-)$1	250	136	160	9.8539
CUCCCAGGCACGUGUGUAAGGGGA	chr22:49993486-49993741(-)$1	255	210	234	13.7685
AUUAAUAAUAGUAAGUUGUUAGUG	chr11:65192531-65192778(+)$1	247	42	66	9.0035
UGGAGGGUAAAAUUUUUAUCUUCA	chr1:76255105-76255329(+)$1	224	127	151	9.9025
UUCAGCCAGAGAUCAUCUGAAAGG	chr3:52724676-52724938(+)$1	262	156	180	9.3741
AGAGACUGUGCAGGCACAACUUCU	chr10:101996707-101996945(-)$1	238	151	175	10.7749
AGAGACUGUGCAGGCACAACUUCU	chr10:101996745-101996966(-)$1	221	172	196	10.7749
UACUUUUUCUUAACAGGCCAAGUU	chr10:3176320-3176590(+)$1	270	179	203	10.6274
CAGCUGGCAGUGUGAUGAGGCUGG	chr5:34192095-34192338(-)$1	243	11	35	9.8128
AAGUUUAGUGUUUUAUAGGUACUU	chr3:160232804-160233033(-)$1	229	91	115	10.3770
cuccacuggcguuagcuguaaggu	chr22:50027944-50028194(-)$1	250	76	100	9.6667

#DB
(((.((.(((....))).)).)))	chr19:1409153-1409409(+)$1	1	214	238	10.1855
((((((..((....))...)))))	chr7:98479382-98479607(+)$1	1	100	124	11.1234
.(((((..((....))..))))).	chr5:179046691-179046929(-)$1	1	3	27	9.3778
(.((((.(((....))))))))))	chr16:31199251-31199476(+)$1	1	103	127	8.6680
.(.(((.(((....)))...))).	chr22:50011824-50012082(-)$1	1	154	178	12.2008
..(((..(((.....)))..))).	chr6:26988114-26988325(+)$1	1	84	108	9.3964
((((.(..(((...)))..).)))	chr22:50013563-50013832(-)$1	1	146	170	11.1007
((.....(((....)))...))))	chr19:5092050-5092299(+)$1	1	122	146	10.2545
(((((...((....))...)))))	chr17:16342999-16343322(+)$1	1	214	238	12.6016
((((....((....))....))))	chr22:50018557-50018800(-)$1	1	32	56	10.4415
((((((.(((.....)))..))))	chrX:135961291-135961495(-)$1	1	47	71	10.0180
(((.((.(((....))).))))).	chr18:47340345-47340638(+)$1	1	135	159	10.2237
.((((((((((...))).))))))	chr16:31199378-31199623(+)$1	1	119	143	10.3017
(((((((((......)))))))))	chr11:93454808-93455010(+)$1	1	43	67	9.7690
((((((..((....))...)))))	chr7:98479339-98479543(+)$1	1	143	167	11.1234
((((((((((....))))))).))	chr11:65193577-65193814(+)$1	1	129	153	9.7821
((((((.(((....))))))))))	chr16:31197545-31197814(+)$1	1	55	79	11.8643
(((...((((....))))..))))	chr16:31198279-31198547(+)$1	1	61	85	8.8034
..((((.(((....)))..)))).	chr19:1411653-1411898(+)$1	1	118	142	10.0295
(((...((((....))))....))	chr2:203141070-203141335(+)$1	1	98	122	9.1534
(((((((((......)))))))))	chr13:114160796-114161086(+)$1	1	242	266	9.7690
((((((.(((....)))..)))))	chr2:101889298-101889531(-)$1	1	48	72	12.6246
((((...(((....)))...))))	chr11:65193628-65193882(+)$1	1	208	232	11.3417
.(((((((((...))))))))).)	chr7:98479281-98479497(+)$1	1	19	43	9.7363
((((((.(((....))).))))))	chr22:50010501-50010784(-)$1	1	16	40	12.1750
(((...((((....))))..))))	chr16:31198156-31198455(+)$1	1	184	208	8.8034
((((....((....))....))))	chr22:50018600-50018914(-)$1	1	146	170	10.4415
((((((((((....))))))))))	chrX:20154123-20154425(-)$1	1	61	85	11.9354
((((((..((....))...)))))	chr7:98479372-98479575(+)$1	1	110	134	11.1234
(((((.((((....))))...)))	chr10:101996766-101996995(-)$1	1	201	225	9.6065
((((((..((....))..))))))	chr22:49980951-49981248(-)$1	1	59	83	9.7560
.(((((((((....))))))))).	chr11:93454833-93455042(+)$1	1	19	43	10.0817
..(((..(((....)))..)))..	chr2:232324973-232325188(-)$1	1	57	81	11.5902
))(((((((((...)))))))))(	chr1:76255091-76255305(+)$1	1	141	165	9.9025
..(((..(((.....)))..))).	chr17:16342932-16343185(+)$1	1	39	63	9.3964
(((((((((......)))))))))	chr11:93454810-93455024(+)$1	1	41	65	9.7690
((((((..((....))...)))))	chr7:98479356-98479564(+)$1	1	126	150	11.1234
((((((.(((.....)))..))))	chrX:135961303-135961532(-)$1	1	84	108	10.0180
.((((((((((...))).))))))	chr11:93465400-93465603(-)$1	1	92	116	9.0898
(((((..(((......))).))))	chr22:50021715-50021956(-)$1	1	88	112	10.1357
((.(((((((....))).)))).)	chr19:37500410-37500647(+)$1	1	167	191	8.4248
((((((((((....))))))))))	chr11:65192489-65192730(+)$1	1	31	55	11.9354
((((((..((....))...)))))	chr7:98479364-98479572(+)$1	1	118	142	11.1234
((((((.((.....)).)))))))	chr12:6619568-6619780(+)$1	1	6	30	9.2015
((((((..((....))...)))))	chr7:98479343-98479556(+)$1	1	139	163	11.1234
.(((...(((....)))...))))	chr11:62621998-62622203(-)$1	1	29	53	12.7585
((((((.(((....))))))))))	chr22:50011586-50011836(-)$1	1	136	160	9.8539
(((((..(((....)))...))))	chr22:49993486-49993741(-)$1	1	210	234	13.7685
(((((((((.....)))))))))(	chr11:65192531-65192778(+)$1	1	42	66	9.0035
))(((((((((...)))))))))(	chr1:76255105-76255329(+)$1	1	127	151	9.9025
))))))))))....))))))))))	chr3:52724676-52724938(+)$1	1	156	180	9.3741
(((((.((((....))))...)))	chr10:101996707-101996945(-)$1	1	151	175	10.7749
(((((.((((....))))...)))	chr10:101996745-101996966(-)$1	1	172	196	10.7749
.((((..(((....)))..)))))	chr10:3176320-3176590(+)$1	1	179	203	10.6274
(((((..((......)).))))))	chr5:34192095-34192338(-)$1	1	11	35	9.8128
((((....(((...)))...))))	chr3:160232804-160233033(-)$1	1	91	115	10.3770
.(((((((((....)))....)))	chr22:50027944-50028194(-)$1	1	76	100	9.6667

#PSSM
g : 0.17	f : 0.15	i : 0.14	c : 0.07	[ : 0.07	= : 0.07	! : 0.05	e : 0.05	$ : 0.03	d : 0.03	h : 0.03	: : 0.03	a : 0.01	# : 0.01	" : 0.01	b : 0.01	
g : 0.21	f : 0.17	i : 0.17	c : 0.08	e : 0.07	= : 0.07	! : 0.05	d : 0.05	h : 0.03	[ : 0.01	a : 0.01	# : 0.01	b : 0.01	
i : 0.21	f : 0.17	g : 0.17	c : 0.14	e : 0.07	d : 0.07	= : 0.07	[ : 0.03	h : 0.03	$ : 0.01	
i : 0.21	g : 0.19	f : 0.17	d : 0.08	c : 0.08	e : 0.07	= : 0.07	" : 0.05	[ : 0.03	$ : 0.01	
i : 0.21	f : 0.17	g : 0.17	" : 0.08	d : 0.07	c : 0.07	= : 0.07	# : 0.05	b : 0.03	e : 0.01	[ : 0.01	$ : 0.01	
f : 0.15	g : 0.14	i : 0.14	! : 0.12	" : 0.10	= : 0.07	d : 0.05	# : 0.05	[ : 0.05	b : 0.03	e : 0.01	c : 0.01	a : 0.01	$ : 0.01	
! : 0.28	[ : 0.21	i : 0.14	d : 0.12	" : 0.05	# : 0.05	g : 0.05	= : 0.05	$ : 0.01	f : 0.01	
c : 0.38	! : 0.15	i : 0.14	d : 0.10	# : 0.05	g : 0.05	= : 0.05	b : 0.03	" : 0.01	
c : 0.45	b : 0.22	i : 0.14	d : 0.10	= : 0.05	g : 0.01	
c : 0.45	b : 0.19	d : 0.10	o : 0.07	i : 0.07	= : 0.05	n : 0.03	g : 0.01	
m : 0.66	n : 0.10	o : 0.08	c : 0.07	i : 0.03	l : 0.01	4 : 0.01	
m : 0.66	l : 0.12	n : 0.10	o : 0.08	4 : 0.01	
m : 0.66	l : 0.12	n : 0.10	o : 0.08	4 : 0.01	
m : 0.66	n : 0.10	l : 0.10	o : 0.08	i : 0.01	4 : 0.01	
c : 0.36	b : 0.21	d : 0.10	o : 0.08	i : 0.08	n : 0.07	= : 0.05	g : 0.01	
c : 0.43	b : 0.22	i : 0.14	d : 0.10	= : 0.05	g : 0.01	o : 0.01	
c : 0.45	i : 0.14	3 : 0.12	d : 0.10	= : 0.05	2 : 0.03	4 : 0.03	g : 0.01	] : 0.01	b : 0.01	
3 : 0.22	i : 0.14	] : 0.12	2 : 0.12	d : 0.12	c : 0.08	= : 0.07	4 : 0.05	g : 0.03	f : 0.01	
3 : 0.28	2 : 0.19	i : 0.15	g : 0.08	4 : 0.07	= : 0.07	b : 0.03	d : 0.03	f : 0.03	e : 0.01	c : 0.01	
3 : 0.15	i : 0.15	f : 0.14	g : 0.12	2 : 0.10	d : 0.07	4 : 0.07	= : 0.07	b : 0.03	e : 0.01	a : 0.01	c : 0.01	] : 0.01	
g : 0.17	i : 0.17	f : 0.14	d : 0.10	c : 0.10	e : 0.07	= : 0.07	3 : 0.05	] : 0.03	h : 0.03	4 : 0.03	
i : 0.21	f : 0.17	g : 0.17	c : 0.12	d : 0.08	e : 0.07	= : 0.07	h : 0.03	a : 0.01	] : 0.01	4 : 0.01	
i : 0.19	f : 0.17	g : 0.17	c : 0.14	e : 0.07	d : 0.07	= : 0.07	h : 0.03	] : 0.03	b : 0.01	2 : 0.01	
g : 0.21	f : 0.15	i : 0.12	e : 0.10	= : 0.07	c : 0.05	b : 0.05	2 : 0.05	d : 0.05	] : 0.03	h : 0.03	3 : 0.01	4 : 0.01	5 : 0.01	

#score	593.3444053168702
#seq	57
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_UTR_m3_run2.txt

#BEAR
CCGGGGGGGYYBBZZZEEE	chr4:174255111-174255413(-)$1	302	234	253	10.7002
}HHHHHHHHYYBB?????D	chr12:7052896-7053144(+)$1	248	226	245	10.5581
IIIIIIIIZZZEEEEE}FF	chr7:151216103-151216386(-)$1	283	239	258	10.9629
}GGGGGGGBB}CCC}DDDD	chr17:76116599-76116830(-)$1	231	202	221	10.1973
:HHHHHHHH}FFFFFFZZZ	chr7:5569348-5569622(-)$1	274	196	215	10.3413
:HHHHHHHHYYEEEEEJJJ	chr22:20105341-20105596(+)$1	255	116	135	11.5448
:FFFFFF}AYYDDDD}DDD	chr20:35491744-35491989(-)$1	245	147	166	9.8968
C}GGGGGGGZZZDDDDZZZ	chr11:75283135-75283404(+)$1	269	244	263	11.0040
YYGGGGGGGYYDDDDZZZE	chr2:97535541-97535801(-)$1	260	202	221	11.2525
BBA}FFFFFF}DDDD}CCC	chr22:19418918-19419254(-)$1	336	214	233	9.4135
}HHHHHHHHYYDDDD::cc	chr5:138629681-138629966(+)$1	285	183	202	10.4652
HHHHHH}BBYYEEEEECCC	chr8:87354877-87355141(+)$1	264	233	252	11.7493
JJJJJJJJJ}A}EEEEE??	chr14:100704552-100704804(-)$1	252	181	200	9.9447
GGGG}DDDDYYEEEEE}BB	chr1:110527543-110527808(+)$1	265	217	236	9.1913
B}GGGGGGG~~~~EEEEE}	chr1:150947039-150947330(-)$1	291	227	246	12.6163
bbGGGGGGG~~~~EEEEE?	chr19:18547997-18548296(-)$1	299	94	113	10.4767
IIIIIIIIIYYCCC}DDDD	chr1:249151662-249151908(-)$1	246	223	242	10.9061
IIIIIIIIIYYDDDD}CCC	chr20:49547275-49547552(-)$1	277	256	275	12.1376
BB}FFFFFFZZZCCCCCC}	chr19:1407621-1407886(+)$1	265	241	260	9.5970
EHHHHHHHH}BB}A}FFFF	chr7:5569495-5569749(-)$1	254	119	138	10.6944
YYGGGGGGGYYCCC:::::	chr8:30669838-30670090(-)$1	252	232	251	8.8632
IIIIIII::::EEEEEEEE	chr7:127671472-127671748(+)$1	276	157	176	8.8863
EE}A}FFFFFFEEEEE}DD	chr19:1652281-1652538(-)$1	257	210	229	8.7588
}GGGGGGGZZZDDDD}CCC	chr17:73775389-73775800(-)$1	411	110	129	11.3122
MGGGGGGG:::EEEEECCC	chr11:64014149-64014454(-)$1	305	96	115	9.1204
JJJJJJJJJJ}EEEEE:::	chr11:3013145-3013465(-)$1	320	239	258	8.9454
IIIIIIIIIZZZA}DDDD}	chr19:16187751-16188015(+)$1	264	228	247	10.8348
YYGGGGGGG}CCC}A}BBZ	chr6:86352565-86352819(-)$1	254	206	225	10.3935
:GGGGGGG{AFFFFFFCCC	chr7:77166711-77166970(+)$1	259	26	45	9.0436
H}GGGGGGGEEEEECCC}F	chr19:2270097-2270395(+)$1	298	266	285	10.9778
DGGGGGGG}EEEEEYYEEE	chr19:34287171-34287445(+)$1	274	202	221	11.2494
IIIIIIIIIYYDDDD}CCC	chr1:245026158-245026465(-)$1	307	251	270	12.1376
:::FFFFFFYYDDDDYYBB	chr19:5719720-5720101(-)$1	381	342	361	9.4982
}HHHHHHHHFFFFFFKKDD	chr19:10829098-10829349(+)$1	251	84	103	8.6938
CC}FFFFFF}DDDD}CCC:	chr7:150779628-150779857(-)$1	229	163	182	8.7212
}HHHHHHHHEEEEE:::::	chr19:41770609-41770858(+)$1	249	125	144	9.9731
}HHHHHHHHZZZEEEEE__	chr19:2270202-2270434(+)$1	232	196	215	12.8005
GHHHHHHHH}EEEEE}AZZ	chr1:26232172-26232446(-)$1	274	179	198	12.4285
:HHHHHHHHDDDD}A}DDD	chr1:153918927-153919200(-)$1	273	216	235	9.8958
JJJJJJJJJYYCCCEEEEE	chr16:2821093-2821358(+)$1	265	225	244	10.6035

#otherMatches

#Seq PSSM
GUGAGGCUCGCGACGUGGG	chr4:174255111-174255413(-)$1	302	234	253	10.7002
AAGCUUGGGGUAUGAAGGU	chr12:7052896-7053144(+)$1	248	226	245	10.5581
GCUGGCGGUCUCCCCCACC	chr7:151216103-151216386(-)$1	283	239	258	10.9629
GUCUCCACCCUUCAGAGGA	chr17:76116599-76116830(-)$1	231	202	221	10.1973
GGCCGGCCCGGCUUCCUUU	chr7:5569348-5569622(-)$1	274	196	215	10.3413
CCACGCGGGACGGCCCCAG	chr22:20105341-20105596(+)$1	255	116	135	11.5448
AGCGGCCGGAGCCGCGCCG	chr20:35491744-35491989(-)$1	245	147	166	9.8968
CAUUCUGCCUGCCCUGAAA	chr11:75283135-75283404(+)$1	269	244	263	11.0040
GGCUUGCGUGAGGCUGGAG	chr2:97535541-97535801(-)$1	260	202	221	11.2525
CCCGGCGCUCGCCUCAgcc	chr22:19418918-19419254(-)$1	336	214	233	9.4135
GCGGGCCGCGGCGCUGAGG	chr5:138629681-138629966(+)$1	285	183	202	10.4652
GCCGCUGCCGUGGCCGCCC	chr8:87354877-87355141(+)$1	264	233	252	11.7493
UCCUUUUUCGCGUCGGGAG	chr14:100704552-100704804(-)$1	252	181	200	9.9447
CUUCAUGGCCACCGUCACC	chr1:110527543-110527808(+)$1	265	217	236	9.1913
UGCCGCCGGGUGAGUcggg	chr1:150947039-150947330(-)$1	291	227	246	12.6163
UGGGGCGGGAGGGCUUGCA	chr19:18547997-18548296(-)$1	299	94	113	10.4767
UUGCCUCCAAAAGGUCUGC	chr1:249151662-249151908(-)$1	246	223	242	10.9061
CGCGGCCGCCAGUGCAGCC	chr20:49547275-49547552(-)$1	277	256	275	12.1376
cccggccucagacgccgcc	chr19:1407621-1407886(+)$1	265	241	260	9.5970
CUCCCGGGCGCUUGCGCGC	chr7:5569495-5569749(-)$1	254	119	138	10.6944
AAGUGCGGACGCUGUGCGA	chr8:30669838-30670090(-)$1	252	232	251	8.8632
GCUGCCGGCACGCGGGGCG	chr7:127671472-127671748(+)$1	276	157	176	8.8863
acgcgccgcgugcccggcc	chr19:1652281-1652538(-)$1	257	210	229	8.7588
GGCGCCGCGCGCCGCGGCC	chr17:73775389-73775800(-)$1	411	110	129	11.3122
GGCGGGCGGAUCGGCGGGG	chr11:64014149-64014454(-)$1	305	96	115	9.1204
CCGGCUGCCCGCCUCACUG	chr11:3013145-3013465(-)$1	320	239	258	8.9454
AUCUGGGGAGGGGGUCGCA	chr19:16187751-16188015(+)$1	264	228	247	10.8348
AACAGCUCCACUCGCGCCG	chr6:86352565-86352819(-)$1	254	206	225	10.3935
GGGGCUUGGCGGGGUCGGG	chr7:77166711-77166970(+)$1	259	26	45	9.0436
GUCCCUGUUGCCUCGAUGU	chr19:2270097-2270395(+)$1	298	266	285	10.9778
CCCGCGGCGCAGCCGAGCC	chr19:34287171-34287445(+)$1	274	202	221	11.2494
AGACUGCGUCACUAGCGCC	chr1:245026158-245026465(-)$1	307	251	270	12.1376
AUCACCCGCAACCCGGUGU	chr19:5719720-5720101(-)$1	381	342	361	9.4982
GUGCCCGCGGCGGGGAACC	chr19:10829098-10829349(+)$1	251	84	103	8.6938
UUGUGCCUCUCCAGCUCGG	chr7:150779628-150779857(-)$1	229	163	182	8.7212
CCGGAGCCUGGGCCGAGGA	chr19:41770609-41770858(+)$1	249	125	144	9.9731
GGACCUCGUGGGCCCCGUU	chr19:2270202-2270434(+)$1	232	196	215	12.8005
CCCACCCGCUGAACUGUGA	chr1:26232172-26232446(-)$1	274	179	198	12.4285
GCGGGGACCGCCCGGAUCU	chr1:153918927-153919200(-)$1	273	216	235	9.8958
CCAACUUUUCAUGUUUCUU	chr16:2821093-2821358(+)$1	265	225	244	10.6035

#DB
)))))))))..))...)))	chr4:174255111-174255413(-)$1	1	234	253	10.7002
.))))))))..)).....)	chr12:7052896-7053144(+)$1	1	226	245	10.5581
))))))))...))))).))	chr7:151216103-151216386(-)$1	1	239	258	10.9629
.))))))))).))).))))	chr17:76116599-76116830(-)$1	1	202	221	10.1973
.)))))))).))))))...	chr7:5569348-5569622(-)$1	1	196	215	10.3413
.))))))))..))))))))	chr22:20105341-20105596(+)$1	1	116	135	11.5448
.)))))).)..)))).)))	chr20:35491744-35491989(-)$1	1	147	166	9.8968
).)))))))...))))...	chr11:75283135-75283404(+)$1	1	244	263	11.0040
..)))))))..))))...)	chr2:97535541-97535801(-)$1	1	202	221	11.2525
))).)))))).)))).)))	chr22:19418918-19419254(-)$1	1	214	233	9.4135
.))))))))..))))..((	chr5:138629681-138629966(+)$1	1	183	202	10.4652
)))))).))..))))))))	chr8:87354877-87355141(+)$1	1	233	252	11.7493
))))))))).).)))))..	chr14:100704552-100704804(-)$1	1	181	200	9.9447
)))).))))..))))).))	chr1:110527543-110527808(+)$1	1	217	236	9.1913
).)))))))....))))).	chr1:150947039-150947330(-)$1	1	227	246	12.6163
)))))))))....))))).	chr19:18547997-18548296(-)$1	1	94	113	10.4767
)))))))))..))).))))	chr1:249151662-249151908(-)$1	1	223	242	10.9061
)))))))))..)))).)))	chr20:49547275-49547552(-)$1	1	256	275	12.1376
)).))))))...)))))).	chr19:1407621-1407886(+)$1	1	241	260	9.5970
))))))))).)).).))))	chr7:5569495-5569749(-)$1	1	119	138	10.6944
..)))))))..))).....	chr8:30669838-30670090(-)$1	1	232	251	8.8632
)))))))....((((((((	chr7:127671472-127671748(+)$1	1	157	176	8.8863
)).).))))))))))).))	chr19:1652281-1652538(-)$1	1	210	229	8.7588
.)))))))...)))).)))	chr17:73775389-73775800(-)$1	1	110	129	11.3122
.(((((((...((((((((	chr11:64014149-64014454(-)$1	1	96	115	9.1204
)))))))))).)))))...	chr11:3013145-3013465(-)$1	1	239	258	8.9454
)))))))))...).)))).	chr19:16187751-16188015(+)$1	1	228	247	10.8348
..))))))).))).).)).	chr6:86352565-86352819(-)$1	1	206	225	10.3935
.(((((((.((((((((((	chr7:77166711-77166970(+)$1	1	26	45	9.0436
).))))))))))))))).)	chr19:2270097-2270395(+)$1	1	266	285	10.9778
)))))))).)))))..)))	chr19:34287171-34287445(+)$1	1	202	221	11.2494
)))))))))..)))).)))	chr1:245026158-245026465(-)$1	1	251	270	12.1376
...))))))..))))..))	chr19:5719720-5720101(-)$1	1	342	361	9.4982
.))))))))((((((..((	chr19:10829098-10829349(+)$1	1	84	103	8.6938
)).)))))).)))).))).	chr7:150779628-150779857(-)$1	1	163	182	8.7212
.))))))))(((((.....	chr19:41770609-41770858(+)$1	1	125	144	9.9731
.))))))))...)))))..	chr19:2270202-2270434(+)$1	1	196	215	12.8005
))))))))).))))).)..	chr1:26232172-26232446(-)$1	1	179	198	12.4285
.)))))))))))).).)))	chr1:153918927-153919200(-)$1	1	216	235	9.8958
)))))))))..))))))))	chr16:2821093-2821358(+)$1	1	225	244	10.6035

#PSSM
} : 0.17	I : 0.15	: : 0.15	C : 0.07	Y : 0.07	B : 0.07	J : 0.07	H : 0.05	G : 0.05	E : 0.05	b : 0.02	M : 0.02	D : 0.02	
H : 0.27	I : 0.15	G : 0.15	} : 0.07	Y : 0.07	J : 0.07	C : 0.05	B : 0.05	F : 0.02	b : 0.02	E : 0.02	: : 0.02	
G : 0.35	H : 0.27	I : 0.15	J : 0.07	} : 0.07	F : 0.02	A : 0.02	: : 0.02	
G : 0.35	H : 0.27	I : 0.15	F : 0.10	J : 0.07	} : 0.02	A : 0.02	
G : 0.32	H : 0.27	I : 0.15	F : 0.12	J : 0.07	} : 0.05	
G : 0.32	H : 0.27	I : 0.15	F : 0.15	J : 0.07	D : 0.02	
G : 0.32	H : 0.24	I : 0.15	F : 0.15	J : 0.07	} : 0.02	D : 0.02	
G : 0.32	H : 0.24	I : 0.12	F : 0.12	J : 0.07	} : 0.02	B : 0.02	D : 0.02	: : 0.02	
H : 0.24	G : 0.19	F : 0.12	I : 0.10	J : 0.07	Z : 0.05	B : 0.05	: : 0.05	A : 0.02	D : 0.02	{ : 0.02	} : 0.02	
Y : 0.35	Z : 0.15	} : 0.15	F : 0.07	E : 0.07	~ : 0.05	: : 0.05	B : 0.02	J : 0.02	A : 0.02	D : 0.02	
Y : 0.35	Z : 0.15	F : 0.10	E : 0.10	} : 0.07	~ : 0.05	: : 0.05	D : 0.05	A : 0.02	B : 0.02	C : 0.02	
E : 0.30	D : 0.24	C : 0.12	Z : 0.10	B : 0.07	F : 0.07	~ : 0.05	} : 0.02	
E : 0.35	D : 0.27	C : 0.15	F : 0.07	B : 0.05	~ : 0.05	} : 0.02	A : 0.02	
E : 0.40	D : 0.24	C : 0.12	F : 0.07	} : 0.07	Z : 0.02	? : 0.02	A : 0.02	
E : 0.35	D : 0.24	} : 0.10	F : 0.07	C : 0.05	: : 0.05	A : 0.05	Z : 0.02	? : 0.02	Y : 0.02	
E : 0.32	} : 0.19	D : 0.10	F : 0.07	: : 0.07	C : 0.07	Z : 0.05	Y : 0.05	? : 0.02	K : 0.02	
C : 0.24	E : 0.19	D : 0.12	: : 0.10	} : 0.07	Z : 0.07	? : 0.02	J : 0.02	F : 0.02	B : 0.02	Y : 0.02	K : 0.02	A : 0.02	
C : 0.22	D : 0.17	E : 0.15	Z : 0.10	B : 0.07	: : 0.07	? : 0.05	F : 0.05	J : 0.02	c : 0.02	} : 0.02	_ : 0.02	
D : 0.17	C : 0.17	E : 0.12	Z : 0.10	: : 0.10	F : 0.07	} : 0.07	? : 0.05	B : 0.05	J : 0.02	c : 0.02	_ : 0.02	

#score	416.7895750878874
#seq	40
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_CDS_m1_run1.txt

#BEAR
gggggg[bb!!ggggggglllggggggg22bb]ggggggg	chr14:73569859-73570141(+)$1	282	22	62	26.1450
""ccc!!bb!!bb[cccmmmmccc]bb4444bb]ccc22a	chr21:46281467-46281762(-)$1	295	228	268	30.8560

#otherMatches

#Seq PSSM
GCUUUUAUUGGUUUCUAGAAACUGgaagaagagaaaggca	chr14:73569859-73570141(+)$1	282	22	62	26.1450
GAACCGGCAGGCUGAGCUGAGGCUGAGAGCAUGAGGUGGG	chr21:46281467-46281762(-)$1	295	228	268	30.8560

#DB
((((((.((..(((((((...)))))))..)).)))))))	chr14:73569859-73570141(+)$1	1	22	62	26.1450
..(((..((..((.(((....))).))....)).)))..)	chr21:46281467-46281762(-)$1	1	228	268	30.8560

#PSSM
g : 0.50	" : 0.50	
g : 0.50	" : 0.50	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	! : 0.50	
[ : 0.50	! : 0.50	
b : 1.00	
b : 1.00	
! : 1.00	
! : 1.00	
g : 0.50	b : 0.50	
g : 0.50	b : 0.50	
g : 0.50	[ : 0.50	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	m : 0.50	
l : 0.50	m : 0.50	
l : 0.50	m : 0.50	
l : 0.50	m : 0.50	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	] : 0.50	
g : 0.50	b : 0.50	
g : 0.50	b : 0.50	
g : 0.50	4 : 0.50	
2 : 0.50	4 : 0.50	
2 : 0.50	4 : 0.50	
b : 0.50	4 : 0.50	
b : 1.00	
] : 0.50	b : 0.50	
g : 0.50	] : 0.50	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	c : 0.50	
g : 0.50	2 : 0.50	
g : 0.50	2 : 0.50	
g : 0.50	a : 0.50	

#score	57.001144004599986
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_transcript_m2_run1.txt

#BEAR
!!ccc!!hhhhhhhhddddoooooodddd4444hhhhhhh	chr8:26151331-26151620(+)$1	289	226	266	14.8522
h[bb[ffffff####cccaooooooa]ccc4444ffffff	chr22:19753473-19753730(+)$1	257	67	107	15.7584
:=========="""eeeeeooooooeeeee>>>>>>>>>>	chr7:158482305-158482596(-)$1	291	153	193	14.5149
cc=========="""ddddmmmmdddd333==========	chr15:64980294-64980538(-)$1	244	76	116	15.6364
:==========[cccrrrrrrrrrccc333==========	chr17:57741257-57741503(+)$1	246	96	136	13.9135
:::ccc[iiiiiiiii[bboooooobbiiiiiiiii]ccc	chr5:39020933-39021199(-)$1	266	222	262	13.6026
ffffff[iiiiiiiiicccooooooccc4444iiiiiiii	chr16:85645091-85645359(+)$1	268	135	175	17.9829
==========%%%%%%cccooooooccc==========::	chr10:122619667-122619927(+)$1	260	58	98	14.3199
"""ccc[ccc[dddd!!cccnnnnnccc333dddd]cccc	chr17:3831323-3831589(-)$1	266	43	83	13.0656
gggggggccc!!a"""cccnnnnnccc333a22ccc]ggg	chr11:62620096-62620336(-)$1	240	170	210	15.7815
c]eeeeeggggggg[ddddoooooodddd22ggggggg::	chr18:12760707-12760914(+)$1	207	127	167	14.4917
[cccggggggg$$$$$cccooooooccc333ggggggg22	chr7:5460858-5461095(-)$1	237	126	166	18.0602
:ffffff"""ccc!!ddddnnnnndddd22ccc333ffff	chr10:18966585-18966866(+)$1	281	43	83	12.6212
[eeeee"""dddd!!ddddoooooodddddddd22eeeee	chr12:104742439-104742680(+)$1	241	173	213	14.6625
ccc!!dddd[ffffffcccooooooccc333ffffffddd	chr1:167191004-167191258(+)$1	254	189	229	14.6350
""ffffff[bb"""eeeeeooooooeeeeebb22ffffff	chr19:8028136-8028414(-)$1	278	190	230	13.8863
!!eeeee[a[ccc!!dddd==========lll========	chr1:155171878-155172134(-)$1	256	95	135	11.7750
[ggggggg"""ccc"""cccmmmmccc4444cccgggggg	chr11:67044762-67045056(+)$1	294	131	171	14.6569
iiii[ggggggg!!eeeeeooooooeeeee]ggggggg22	chr17:66527946-66528199(+)$1	253	63	103	16.4996
::============"""bboooooobb============B	chrX:70764424-70764636(+)$1	212	8	48	15.5783
d!!iiiiiiiii"""a[cccooooooccc]a666666iii	chr19:3052961-3053215(-)$1	254	84	124	15.3490
gggggg"""eeeee[ddddoooooodddd]eeeeeggggg	chr6:31478131-31478359(+)$1	228	96	136	16.4538
gggggg[ccc!!ggggggg[ammmma]ggggggg4444cc	chr11:32914991-32915269(+)$1	278	162	202	12.3019
"a[ddddccc[gggggggooooooggggggg22ccc333d	chr3:187457760-187458047(-)$1	287	182	222	14.0332
ccdddd[ccciiiiiiiiillliiiiiiiii333ccc]dd	chr7:150784796-150785077(+)$1	281	175	215	12.2796
bb!!eeeee!!ddddddddoooooodddd22dddd22eee	chr14:73567065-73567324(+)$1	259	137	177	13.8909
==========[bbccc[aooooooaccc666666bb]===	chrX:73182565-73182830(+)$1	265	150	190	14.6509
gggggeeeee$$$$$eeeeeooooooeeeeeeeeee]ggg	chr6:158986803-158987058(+)$1	255	55	95	13.6388
eeeccc[ggggggg[ddddoooooodddd]ggggggg]cc	chr16:89005348-89005579(-)$1	231	160	200	17.0746
ff####===========[bbnnnnnbb22===========	chr16:77225074-77225309(+)$1	235	111	151	13.0238
""adddd!!dddd!!ddddoooooodddd]dddd]dddd]	chr2:171823011-171823265(+)$1	254	150	190	14.7017
cccccc[bb"""bb[ddddoooooodddd]bb22bbcccD	chr19:5077087-5077346(+)$1	259	54	94	14.2632
"gggggggeeeeeffffffooooooffffff4444eeeee	chr19:15442835-15443109(-)$1	274	64	104	14.0409
ffffff####ccc[cccrrrrrrrrrccc]ccc4444fff	chr12:76440106-76440396(-)$1	290	142	182	12.4401
cccggggggg####cccrrrrrrrrrccc4444ggggggg	chr9:110092481-110092708(+)$1	227	144	184	15.1228
iiiiiiiii"""dddd[bblllbb]dddd333iiiiiiii	chr17:80872221-80872469(+)$1	248	3	43	13.9200
:iiiiiiiii$$$$$ddddooooooddddiiiiiiiii::	chr12:69667909-69668182(+)$1	273	133	173	15.3567
iiiiiiccc!!ccc"""bboooooobb333cccccc]iii	chr3:194174796-194175092(-)$1	296	174	214	17.4618
d==========="""ddddrrrrrrrrrdddd333=====	chr11:33880650-33880896(-)$1	246	162	202	15.1466
!bb[a[a[eeeee[eeeeeooooooeeeee]eeeee]a]a	chr15:100106553-100106811(+)$1	258	80	120	14.0241
ddccc!!ccc[dddd[bboooooobbddddccc22ccc22	chr11:65199421-65199633(+)$1	212	125	165	12.7789
eee[===========[cccnnnnnccc]===========]	chrX:70598278-70598556(+)$1	278	94	134	15.4229
iiii!!a!!a[cccffffffooooooffffff]ccc]a22	chr17:46625777-46626024(+)$1	247	16	56	14.1522
eee"""ffffffccc!!aooooooa]ccc]ffffff22ee	chr16:85666947-85667216(+)$1	269	9	49	13.3610
hhhhhhh!!bb####ddddoooooodddd333bb]hhhhh	chr10:5727482-5727744(+)$1	262	162	202	15.9588
!ggggggg"""bb"""cccnnnnnccc]bb333ggggggg	chr2:187367237-187367534(+)$1	297	52	92	15.1975
"""cccffffffccc[cccooooooccc]ccc333fffff	chr21:44269686-44269929(-)$1	243	95	135	15.9040
gggggg[eeeee[ffffffooooooffffff]eeeee]gg	chr1:45976770-45976977(-)$1	207	111	151	13.8513
hhhhhhh!!bb####ddddoooooodddd333bb333hhh	chr8:142308503-142308777(-)$1	274	198	238	16.6532
fff!!ccc"""ccc[a[cccooooooccc]a]ccc22ccc	chr22:50040258-50040494(-)$1	236	120	160	15.8492
gggggg[ccc[bb!!ddddoooooodddd]bb]ccc]ggg	chr1:167387521-167387774(+)$1	253	186	226	17.7146
:dddd!!ffffff[a[cccooooooccc]a]ffffff22d	chr1:16677737-16677972(-)$1	235	42	82	13.7834
ggggggg"""ccc!!cccqqqqqqqqccccccgggggggh	chr1:1326492-1326714(-)$1	222	27	67	12.4616

#otherMatches

#Seq PSSM
UUCCACAUACAAAUAAAUGGUGAUGCAUUUUUAUGUUUGU	chr8:26151331-26151620(+)$1	289	226	266	14.8522
UGGGAUCCGGGUUCCGGCCCUGUGCGCGCUCUACCCCGGG	chr22:19753473-19753730(+)$1	257	67	107	15.7584
CAUGGUUCCUGUCUGCACCAUGCUCGGUGUUGCUUAGCUA	chr7:158482305-158482596(-)$1	291	153	193	14.5149
ACCCCAGGGGCUCCUGAGUAUAGGCUUUUCAGUCCCUGGG	chr15:64980294-64980538(-)$1	244	76	116	15.6364
AAGUGAGUUCAAUGAAACACAUUCUCAGCAUGAAUUCAUU	chr17:57741257-57741503(+)$1	246	96	136	13.9135
GUAUUUGUGUAAUAGAAGAAUUAUAUCUUUGUUACAGAAA	chr5:39020933-39021199(-)$1	266	222	262	13.6026
ccggcccgcgugcgcccccaccuccgggccccggcgcgcg	chr16:85645091-85645359(+)$1	268	135	175	17.9829
GGAAGAAGAGCUAUGCAGAUAACAUUCUUUCUUUUUCUUU	chr10:122619667-122619927(+)$1	260	58	98	14.3199
CAGACCACACCGGGUUGGCCUCUUUGGUAUCACCUUGUGG	chr17:3831323-3831589(-)$1	266	43	83	13.0656
UUUACCUCUGCAGGAAUCUGUCUUGGAGGACAUCAGAAGG	chr11:62620096-62620336(-)$1	240	170	210	15.7815
GAGAAGCUACAggccgggcgcgguggcucacgccuguaau	chr18:12760707-12760914(+)$1	207	127	167	14.4917
ACUCUGGGACUACGCCGAGGCCGAACUUUUAGGUCCCACU	chr7:5460858-5461095(-)$1	237	126	166	18.0602
UAAUUAGUGCCUUUAUUCAUAUUUUGAAAUAAGUUCUUAG	chr10:18966585-18966866(+)$1	281	43	83	12.6212
GUUAGCAGUUGAUUUUUGUCCAAAAGCAAGUCAUGGCUAG	chr12:104742439-104742680(+)$1	241	173	213	14.6625
GAGUUGGGCUGGAGGUGCCUGGCGUGGUCUGACCUCCGUC	chr1:167191004-167191258(+)$1	254	189	229	14.6350
UCUGGGAUGCAACCGACAUGUUCAAAUGUUUGAAAUCCCA	chr19:8028136-8028414(-)$1	278	190	230	13.8863
AGUGUGUGUGGACAAGGGAUCUUGGCCUUGUAGAGGCCAG	chr1:155171878-155172134(-)$1	256	95	135	11.7750
CCCACUCUCCAGAGAUUUGGCCUCCCAUCCACUCAGGGUG	chr11:67044762-67045056(+)$1	294	131	171	14.6569
UUCAUUGUGAUUUAUAUAUAAGGUAAUGUAGGGUUAUAUU	chr17:66527946-66528199(+)$1	253	63	103	16.4996
GCAGUGACCUGGGGAACCUGCUCAAAGCCCUGGGUCGCUU	chrX:70764424-70764636(+)$1	212	8	48	15.5783
uauuuuuuuCUUUUUCCAGUAUACUAGCUUGUCUUUUAAG	chr19:3052961-3053215(-)$1	254	84	124	15.3490
cccacguucgcccuuuguucaguccAAUACAGGGUUGUGG	chr6:31478131-31478359(+)$1	228	96	136	16.4538
CUCACAUGGUGAAGUUUGGGCUCGUGGCUGAACUCGGGAU	chr11:32914991-32915269(+)$1	278	162	202	12.3019
AGCGCCGUCGCCCCCGCCCGGGUCGGCGGGGAUCGAGUUC	chr3:187457760-187458047(-)$1	287	182	222	14.0332
CCCUGGUGUGGUGGGUGCUGGAGGCACCCGCAGGCACCCC	chr7:150784796-150785077(+)$1	281	175	215	12.2796
UCUCUCAAUGACAGUGCAUCUGUGAAUGUUCGCUGGUGUU	chr14:73567065-73567324(+)$1	259	137	177	13.8909
gucuucucuauccuccacuuauaugggauaugauggcuag	chrX:73182565-73182830(+)$1	265	150	190	14.6509
GCUUUCCCCCACAGAGCCUCGCGGUGGGGGCGGGGGUGGA	chr6:158986803-158987058(+)$1	255	55	95	13.6388
CAGGGCUGCAGUGGGGAGGGCCGGGCCUCGCCGCUGCCGC	chr16:89005348-89005579(-)$1	231	160	200	17.0746
AGUAGAGUCUCCUCUUUUCGGAAAGUGUUGGAGGGGGGAC	chr16:77225074-77225309(+)$1	235	111	151	13.0238
UUGUGUUAAAGUUCUACAGCGCGCACUGUUAACUGAACGU	chr2:171823011-171823265(+)$1	254	150	190	14.7017
UCUGCCACCUGCAGAGCUCACAGCAGGGCACUAUGGGGCG	chr19:5077087-5077346(+)$1	259	54	94	14.2632
CGCGGCGCGGUCCGCGUAACCUGCAUUGCGUAAUGGGGCC	chr19:15442835-15443109(-)$1	274	64	104	14.0409
GAAAUGCAGCUUUUUCUGAACUUCAAAGAUAGAAUCCCAU	chr12:76440106-76440396(-)$1	290	142	182	12.4401
UUAUUUUCCUGUUUACAUUUUUUUUUUGUUUUGGGGAAAA	chr9:110092481-110092708(+)$1	227	144	184	15.1228
GCUCUGGGGCACGUGUGCUGUUGGGAUGCAUCCCUCAGGG	chr17:80872221-80872469(+)$1	248	3	43	13.9200
GGCAGUUUGAUAUAUGGCCAUUGUCGGCCUUAAACUGCAC	chr12:69667909-69668182(+)$1	273	133	173	15.3567
aauaguacucagcacaaaguaaauucucaaugcagucauu	chr3:194174796-194175092(-)$1	296	174	214	17.4618
AUUCAGGGGCUGACACUUCAAGGUGACAGAAGGACCAGCC	chr11:33880650-33880896(-)$1	246	162	202	15.1466
agggcgggccgguggggcuggauggggcucggcugggcgg	chr15:100106553-100106811(+)$1	258	80	120	14.0241
aguugaugggcauguagguugguuccauaucuuugcaauu	chr11:65199421-65199633(+)$1	212	125	165	12.7789
UUUAAUUGGGGAGAUACUGGGUGGUAGGGUUUCUUUGGUG	chrX:70598278-70598556(+)$1	278	94	134	15.4229
GAUUGUGAAGUUUAGGUUUCGUGGAAGAAACCGUAAUCGG	chr17:46625777-46626024(+)$1	247	16	56	14.1522
GUUGGGGCCUUAGUUUCCUUUUCUGUAACGUGGGGCAGAA	chr16:85666947-85667216(+)$1	269	9	49	13.3610
UUGGUGCGAGCAACACAGAAGUUUGUCUGAAGGCGGCGCC	chr10:5727482-5727744(+)$1	262	162	202	15.9588
AAAGAAAAAACCAAAAACUCAAAUAGUAUGUCCUUUUCUU	chr2:187367237-187367534(+)$1	297	52	92	15.1975
CUUCGUGUCCGCUGCAUCUUCCUCUAGGAGCAUCUGUGGG	chr21:44269686-44269929(-)$1	243	95	135	15.9040
UCCUACAGGGGGUGGAGAGACCAGCCUUUCUUCCUUUGGU	chr1:45976770-45976977(-)$1	207	111	151	13.8513
GGGACUGGGCCUGCUGUGGUAUGUUCCAUUCUGGAGAUGG	chr8:142308503-142308777(-)$1	274	198	238	16.6532
GGCUGGCAGAUGCUGUUGGACUUACCUCCUAGGGCCAUGU	chr22:50040258-50040494(-)$1	236	120	160	15.8492
GAGUCCCUCCCUUGGGAGUGGUGAAACUUAGAAGGAAGGA	chr1:167387521-167387774(+)$1	253	186	226	17.7146
CUGUGGUGGGAUUCUGAUCGAUCUAGAUGAAGAUUCUGAC	chr1:16677737-16677972(-)$1	235	42	82	13.7834
AGUUCAUUUGAGUUUGCAUGUUUCUCUGCACUAUGGAUUU	chr1:1326492-1326714(-)$1	222	27	67	12.4616

#DB
..(((..((((((((((((......))))....)))))))	chr8:26151331-26151620(+)$1	1	226	266	14.8522
(.((.((((((....((((......).)))....))))))	chr22:19753473-19753730(+)$1	1	67	107	15.7584
.((((((((((...(((((......)))))..........	chr7:158482305-158482596(-)$1	1	153	193	14.5149
((((((((((((...((((....))))...))))))))))	chr15:64980294-64980538(-)$1	1	76	116	15.6364
.((((((((((.(((.........)))...))))))))))	chr17:57741257-57741503(+)$1	1	96	136	13.9135
...(((.(((((((((.((......))))))))))).)))	chr5:39020933-39021199(-)$1	1	222	262	13.6026
((((((.((((((((((((......)))....))))))))	chr16:85645091-85645359(+)$1	1	135	175	17.9829
((((((((((......(((......)))))))))))))..	chr10:122619667-122619927(+)$1	1	58	98	14.3199
...(((.(((.((((..(((.....)))...)))).))))	chr17:3831323-3831589(-)$1	1	43	83	13.0656
((((((((((..(...(((.....)))...)..))).)))	chr11:62620096-62620336(-)$1	1	170	210	15.7815
).)))))(((((((.((((......))))..)))))))..	chr18:12760707-12760914(+)$1	1	127	167	14.4917
.((((((((((.....(((......)))...)))))))..	chr7:5460858-5461095(-)$1	1	126	166	18.0602
.((((((...(((..((((.....))))..)))...))))	chr10:18966585-18966866(+)$1	1	43	83	12.6212
.(((((...((((..((((......))))))))..)))))	chr12:104742439-104742680(+)$1	1	173	213	14.6625
(((..((((.(((((((((......)))...)))))))))	chr1:167191004-167191258(+)$1	1	189	229	14.6350
..((((((.((...(((((......)))))))..))))))	chr19:8028136-8028414(-)$1	1	190	230	13.8863
..(((((.(.(((..((((((((((((((...))))))))	chr1:155171878-155172134(-)$1	1	95	135	11.7750
.(((((((...(((...(((....)))....)))))))))	chr11:67044762-67045056(+)$1	1	131	171	14.6569
((((.(((((((..(((((......))))).)))))))..	chr17:66527946-66528199(+)$1	1	63	103	16.4996
..((((((((((((...((......))))))))))))))(	chrX:70764424-70764636(+)$1	1	8	48	15.5783
(..(((((((((...(.(((......))).)......)))	chr19:3052961-3053215(-)$1	1	84	124	15.3490
((((((...(((((.((((......)))).))))))))))	chr6:31478131-31478359(+)$1	1	96	136	16.4538
((((((.(((..(((((((.(....).)))))))....))	chr11:32914991-32915269(+)$1	1	162	202	12.3019
.(.(((((((.(((((((......)))))))..)))...)	chr3:187457760-187458047(-)$1	1	182	222	14.0332
((((((.((((((((((((...)))))))))...))).))	chr7:150784796-150785077(+)$1	1	175	215	12.2796
((..(((((..((((((((......))))..))))..)))	chr14:73567065-73567324(+)$1	1	137	177	13.8909
((((((((((.(((((.(......))))......)).)))	chrX:73182565-73182830(+)$1	1	150	190	14.6509
((((((((((.....(((((......)))))))))).)))	chr6:158986803-158987058(+)$1	1	55	95	13.6388
((((((.(((((((.((((......)))).))))))).))	chr16:89005348-89005579(-)$1	1	160	200	17.0746
((....(((((((((((.((.....))..)))))))))))	chr16:77225074-77225309(+)$1	1	111	151	13.0238
..(((((..((((..((((......)))).)))).)))).	chr2:171823011-171823265(+)$1	1	150	190	14.7017
)))(((.((...((.((((......)))).))..))))))	chr19:5077087-5077346(+)$1	1	54	94	14.2632
.((((((((((((((((((......))))))....)))))	chr19:15442835-15443109(-)$1	1	64	104	14.0409
((((((....(((.(((.........))).)))....)))	chr12:76440106-76440396(-)$1	1	142	182	12.4401
((((((((((....(((.........)))....)))))))	chr9:110092481-110092708(+)$1	1	144	184	15.1228
(((((((((...((((.((...)).))))...))))))))	chr17:80872221-80872469(+)$1	1	3	43	13.9200
.(((((((((.....((((......)))))))))))))..	chr12:69667909-69668182(+)$1	1	133	173	15.3567
(((((((((..(((...((......))...)))))).)))	chr3:194174796-194175092(-)$1	1	174	214	17.4618
((((((((((((...((((.........))))...)))))	chr11:33880650-33880896(-)$1	1	162	202	15.1466
.((.(.(.(((((.(((((......))))).))))).).)	chr15:100106553-100106811(+)$1	1	80	120	14.0241
(((((..(((.((((.((......)))))))))..)))..	chr11:65199421-65199633(+)$1	1	125	165	12.7789
(((.(((((((((((.(((.....))).))))))))))).	chrX:70598278-70598556(+)$1	1	94	134	15.4229
((((..(..(.(((((((((......)))))).))).)..	chr17:46625777-46626024(+)$1	1	16	56	14.1522
(((...(((((((((..(......).))).))))))..))	chr16:85666947-85667216(+)$1	1	9	49	13.3610
(((((((..((....((((......))))...)).)))))	chr10:5727482-5727744(+)$1	1	162	202	15.9588
.(((((((...((...(((.....))).))...)))))))	chr2:187367237-187367534(+)$1	1	52	92	15.1975
...((((((((((((.(((......))).)))...)))))	chr21:44269686-44269929(-)$1	1	95	135	15.9040
((((((.(((((.((((((......)))))).))))).))	chr1:45976770-45976977(-)$1	1	111	151	13.8513
(((((((..((....((((......))))...))...)))	chr8:142308503-142308777(-)$1	1	198	238	16.6532
(((..(((...(((.(.(((......))).).)))..)))	chr22:50040258-50040494(-)$1	1	120	160	15.8492
((((((.(((.((..((((......)))).)).))).)))	chr1:167387521-167387774(+)$1	1	186	226	17.7146
.((((..((((((.(.(((......))).).))))))..)	chr1:16677737-16677972(-)$1	1	42	82	13.7834
(((((((...(((..(((........))))))))))))))	chr1:1326492-1326714(-)$1	1	27	67	12.4616

#PSSM
: : 0.13	g : 0.13	c : 0.11	" : 0.11	! : 0.07	f : 0.07	i : 0.07	h : 0.05	[ : 0.05	d : 0.05	e : 0.05	= : 0.03	b : 0.01	
g : 0.18	c : 0.11	= : 0.09	f : 0.09	i : 0.09	" : 0.07	e : 0.07	! : 0.05	: : 0.03	b : 0.03	d : 0.03	h : 0.03	[ : 0.01	] : 0.01	a : 0.01	
g : 0.18	= : 0.13	c : 0.11	e : 0.11	f : 0.09	i : 0.09	b : 0.03	" : 0.03	! : 0.03	d : 0.03	h : 0.03	: : 0.01	[ : 0.01	# : 0.01	a : 0.01	
g : 0.20	c : 0.15	= : 0.13	i : 0.11	f : 0.07	d : 0.07	e : 0.05	! : 0.05	[ : 0.03	h : 0.03	b : 0.01	# : 0.01	" : 0.01	
g : 0.22	= : 0.15	c : 0.13	f : 0.07	e : 0.07	i : 0.07	d : 0.07	! : 0.05	[ : 0.03	h : 0.03	# : 0.01	a : 0.01	" : 0.01	
g : 0.22	= : 0.15	c : 0.11	f : 0.09	e : 0.09	! : 0.07	d : 0.07	i : 0.07	h : 0.03	# : 0.01	[ : 0.01	" : 0.01	
= : 0.16	[ : 0.16	g : 0.15	f : 0.09	e : 0.07	! : 0.05	d : 0.05	i : 0.05	" : 0.03	c : 0.03	a : 0.03	h : 0.03	# : 0.01	
= : 0.16	c : 0.16	g : 0.15	f : 0.09	i : 0.09	" : 0.07	! : 0.07	e : 0.05	[ : 0.03	h : 0.01	d : 0.01	b : 0.01	# : 0.01	
= : 0.16	c : 0.15	" : 0.13	i : 0.09	g : 0.09	e : 0.09	f : 0.07	! : 0.07	h : 0.01	d : 0.01	[ : 0.01	a : 0.01	b : 0.01	# : 0.01	
= : 0.16	c : 0.13	" : 0.13	g : 0.09	e : 0.09	f : 0.07	i : 0.07	b : 0.05	d : 0.03	[ : 0.03	! : 0.03	h : 0.01	# : 0.01	a : 0.01	
= : 0.13	[ : 0.11	f : 0.09	" : 0.09	i : 0.07	! : 0.07	g : 0.07	c : 0.07	e : 0.07	b : 0.05	d : 0.03	$ : 0.03	h : 0.01	% : 0.01	# : 0.01	
c : 0.15	= : 0.09	d : 0.09	# : 0.07	" : 0.07	i : 0.07	g : 0.07	f : 0.07	e : 0.07	$ : 0.05	b : 0.05	! : 0.03	h : 0.01	[ : 0.01	% : 0.01	
c : 0.20	d : 0.11	" : 0.09	# : 0.07	g : 0.07	b : 0.07	i : 0.05	$ : 0.05	= : 0.05	e : 0.05	f : 0.03	h : 0.01	% : 0.01	a : 0.01	! : 0.01	[ : 0.01	
c : 0.15	" : 0.13	! : 0.13	# : 0.07	d : 0.07	g : 0.07	i : 0.05	$ : 0.05	f : 0.05	= : 0.05	[ : 0.05	h : 0.01	% : 0.01	e : 0.01	b : 0.01	
" : 0.15	c : 0.11	! : 0.11	[ : 0.09	e : 0.07	d : 0.07	f : 0.07	# : 0.05	i : 0.05	$ : 0.05	g : 0.03	= : 0.03	h : 0.01	% : 0.01	a : 0.01	
d : 0.32	c : 0.09	e : 0.09	" : 0.09	f : 0.07	[ : 0.07	i : 0.05	! : 0.03	a : 0.03	g : 0.03	r : 0.01	% : 0.01	$ : 0.01	= : 0.01	
d : 0.30	c : 0.24	e : 0.09	[ : 0.09	" : 0.05	f : 0.05	! : 0.03	g : 0.03	r : 0.01	i : 0.01	= : 0.01	b : 0.01	
d : 0.30	c : 0.28	e : 0.09	b : 0.09	r : 0.05	f : 0.05	g : 0.03	a : 0.03	i : 0.01	[ : 0.01	
d : 0.30	c : 0.24	e : 0.09	b : 0.09	o : 0.07	r : 0.05	f : 0.05	a : 0.01	g : 0.01	i : 0.01	q : 0.01	
o : 0.60	r : 0.07	c : 0.07	n : 0.07	l : 0.03	m : 0.01	= : 0.01	[ : 0.01	e : 0.01	b : 0.01	f : 0.01	q : 0.01	
o : 0.67	n : 0.11	r : 0.07	m : 0.03	l : 0.03	= : 0.01	a : 0.01	q : 0.01	
o : 0.67	n : 0.11	r : 0.07	m : 0.05	l : 0.03	= : 0.01	q : 0.01	
o : 0.67	n : 0.11	r : 0.07	m : 0.05	= : 0.01	i : 0.01	b : 0.01	q : 0.01	
o : 0.67	n : 0.11	r : 0.07	m : 0.03	d : 0.01	= : 0.01	i : 0.01	b : 0.01	q : 0.01	
o : 0.60	c : 0.09	r : 0.05	d : 0.03	n : 0.03	a : 0.03	= : 0.01	m : 0.01	g : 0.01	i : 0.01	] : 0.01	b : 0.01	q : 0.01	
d : 0.28	c : 0.24	b : 0.09	e : 0.07	o : 0.07	r : 0.05	a : 0.03	f : 0.03	= : 0.01	g : 0.01	i : 0.01	] : 0.01	q : 0.01	
c : 0.35	d : 0.30	e : 0.09	b : 0.07	f : 0.05	] : 0.03	= : 0.01	g : 0.01	i : 0.01	r : 0.01	
d : 0.28	c : 0.28	e : 0.09	3 : 0.07	f : 0.05	i : 0.03	= : 0.03	g : 0.03	] : 0.03	4 : 0.01	2 : 0.01	r : 0.01	
d : 0.28	c : 0.13	3 : 0.13	e : 0.09	= : 0.07	f : 0.05	i : 0.03	4 : 0.03	2 : 0.03	g : 0.03	] : 0.03	6 : 0.01	b : 0.01	
3 : 0.18	] : 0.16	e : 0.09	4 : 0.07	= : 0.07	c : 0.05	i : 0.05	2 : 0.05	d : 0.05	f : 0.05	g : 0.03	l : 0.01	6 : 0.01	b : 0.01	a : 0.01	
3 : 0.13	= : 0.11	c : 0.11	4 : 0.09	f : 0.07	i : 0.05	a : 0.05	d : 0.05	b : 0.05	] : 0.05	g : 0.05	2 : 0.03	e : 0.03	> : 0.01	l : 0.01	6 : 0.01	
c : 0.13	= : 0.11	4 : 0.09	d : 0.09	g : 0.09	3 : 0.09	f : 0.07	b : 0.05	e : 0.05	i : 0.03	2 : 0.03	6 : 0.03	] : 0.03	> : 0.01	l : 0.01	
= : 0.13	g : 0.11	c : 0.11	4 : 0.07	i : 0.07	d : 0.07	2 : 0.07	e : 0.07	3 : 0.07	f : 0.05	6 : 0.03	] : 0.03	b : 0.03	> : 0.01	
g : 0.15	= : 0.13	c : 0.13	i : 0.07	3 : 0.07	2 : 0.07	e : 0.07	4 : 0.05	d : 0.05	f : 0.05	6 : 0.03	b : 0.03	h : 0.01	> : 0.01	
g : 0.15	= : 0.13	c : 0.13	f : 0.09	i : 0.07	3 : 0.07	e : 0.07	4 : 0.05	d : 0.03	2 : 0.03	b : 0.03	] : 0.03	h : 0.01	> : 0.01	6 : 0.01	
g : 0.16	= : 0.15	c : 0.13	f : 0.11	e : 0.09	i : 0.07	h : 0.03	3 : 0.03	4 : 0.03	2 : 0.03	b : 0.03	> : 0.01	] : 0.01	6 : 0.01	d : 0.01	
g : 0.16	= : 0.15	] : 0.15	f : 0.11	c : 0.07	i : 0.05	e : 0.05	2 : 0.05	h : 0.03	4 : 0.03	3 : 0.03	> : 0.01	6 : 0.01	d : 0.01	
g : 0.20	= : 0.16	f : 0.09	c : 0.09	i : 0.09	h : 0.05	e : 0.05	] : 0.05	d : 0.03	a : 0.03	2 : 0.03	> : 0.01	4 : 0.01	3 : 0.01	
g : 0.16	= : 0.15	c : 0.11	f : 0.09	2 : 0.09	i : 0.07	e : 0.07	h : 0.05	: : 0.05	d : 0.05	> : 0.01	3 : 0.01	] : 0.01	
g : 0.15	= : 0.11	f : 0.09	c : 0.09	h : 0.07	i : 0.07	2 : 0.07	e : 0.07	d : 0.07	: : 0.05	] : 0.03	> : 0.01	B : 0.01	D : 0.01	a : 0.01	

#score	778.560063636577
#seq	53
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_CDS_m1_run1.txt

#BEAR
c[eeeeeeeeee!!cccooooooccc]eeeee]eeeeecc	chr22:50689208-50689477(-)$1	269	100	140	15.3873
iiiiiiiibb"""ddddoooooodddd333bb]iiiiiii	chr3:156868052-156868331(-)$1	279	102	142	16.5130
e"""a[cccccc!!cccrrrrrrrrrccc22ccc]ccca3	chrX:70464194-70464474(-)$1	280	21	61	14.3869
d:dddd!!a[ccc[cccooooooccc]ccc]a333ddddH	chr3:48463106-48463343(-)$1	237	120	160	15.7525
f[bb!!eeeee$$$$$bboooooobb333eeeee4444bb	chrX:48664625-48664878(+)$1	253	207	247	12.2419
F:eeeee"""gggggggooooooggggggg333eeeeegg	chr22:19966486-19966752(-)$1	266	105	145	13.6895
""dddd[a[ccc[bbcccnnnnnccc]bb]cccadddd44	chr1:31896391-31896670(+)$1	279	123	163	12.9973
ggggggg"""ddddcccooooooccc]dddd22ggggggg	chr18:8378103-8378367(+)$1	264	154	194	16.2886
iiiiiii!!bb!!cccpppppppccc22bbiiiiiiiii]	chr19:42402425-42402694(+)$1	269	198	238	13.0901
========[ccc[bbssssssssssbb]ccc]========	chrY:2722464-2722749(+)$1	285	158	198	13.1915
========[ddddssssssssssdddd=============	chr16:30767765-30768043(+)$1	278	104	144	12.6130
ee$$$$$ggggggg[bboooooobbggggggg]eeeeecc	chr16:71956258-71956504(+)$1	246	105	145	13.4733
ggggggg$$$$$bbcccooooooccc]bb]gggggggbbe	chr20:62373901-62374154(+)$1	253	149	189	15.5036
[bbccc[ccc!!cccbboooooobb22ccc]ccc]ccc44	chr20:61595383-61595689(+)$1	306	115	155	15.4657
###ddddbb"""eeeeeooooooeeeee22bb]dddd444	chr11:43469386-43469668(+)$1	282	217	257	13.1369
ggggggg!!dddd[cccooooooccc]dddd22ggggggg	chr12:53862394-53862663(+)$1	269	209	249	16.3460
ddd####a[bb"""bboooooobb333bb]a333dddd33	chr16:74946104-74946386(-)$1	282	195	235	14.8620
:dddd!!eeeee"""cccooooooccc]eeeee22dddd:	chr6:35803153-35803418(-)$1	265	225	265	12.0540
ccc[a"""ccc"""cccooooooccc333ccc333a]ccc	chr2:242695107-242695392(+)$1	285	26	66	18.7001
c[cccccc[ccc"""ddddmmmmddddcccccc]cccccc	chr3:49723273-49723534(-)$1	261	95	135	11.6977
=========[ccc[ccclllccc4444ccc==========	chr2:220100271-220100534(+)$1	263	64	104	15.4006
B===========[accclllccc4444a]===========	chr20:45878081-45878347(-)$1	266	155	195	14.8016
bdddd!!gggggggcccooooooccc]ggggggg]dddd]	chr20:61588627-61588916(+)$1	289	62	102	16.5372
bb[ccc[bb[dddd[bboooooobb]dddd]bb]ccc]bb	chr16:722567-722809(+)$1	242	161	201	12.6860
]ddddiiiiiiiiicccooooooccc]iiiiiiiii::dd	chr22:42557247-42557502(-)$1	255	121	161	15.0187
ddd!!==========[aqqqqqqqqa]==========]dd	chr7:65439585-65439813(-)$1	228	146	186	13.4741
eeee[ccc"""ffffffrrrrrrrrrffffff333ccc]e	chr16:87369738-87370025(-)$1	287	114	154	12.3343
e!!ccc[a$$$$$ddddoooooodddda]ccc22eeeee:	chr19:11313284-11313537(-)$1	253	63	103	14.4386
bb22ffffffccc[cccooooooccc]cccgggggggnnn	chr20:21310981-21311237(+)$1	256	112	152	13.1113
bb[ggggggg[ccc[cccnnnnnccc]cccggggggg]bb	chr16:24965937-24966196(-)$1	259	100	140	13.2231
!!dddd[==========rrrrrrrrr==========22dd	chr9:131184999-131185257(+)$1	258	47	87	14.7568
eeeee[===========rrrrrrrrr===========]ee	chr3:197260313-197260661(-)$1	348	54	94	15.2037
=========="""ddddoooooodddd333==========	chr1:207958265-207958525(+)$1	260	220	260	18.6292
b[ggggggg"""cccqqqqqqqqccc4444ggggggg]bb	chr9:133491587-133491868(+)$1	281	18	58	12.6934
[a[iiiiiiiii!!bbpppppppbb333iiiiiiiii]a]	chr15:101825896-101826152(-)$1	256	158	198	13.4032
g!!ccc[a[ccc[ddddrrrrrrrrrdddd]ccc]accc3	chr1:25570850-25571143(-)$1	293	107	147	14.1792
iiiiiiii!!ccc####ammmma4444ccciiiiiiiii:	chr20:62320250-62320515(+)$1	265	14	54	13.4371
cc[eeeee[a####ddddoooooodddd333aeeeee333	chr11:64815104-64815395(-)$1	291	146	186	15.3207
eggggggg[ccc!!cccooooooccc]cccggggggg444	chr1:31454127-31454409(-)$1	282	196	236	18.5626
ffffff"""dddd[bb[aooooooa]bb333dddd4444f	chr19:36297628-36297897(-)$1	269	130	170	13.0147
c!!dddd!!ccc!!cccooooooccc22ccc]ddddccc2	chrX:153579296-153579572(-)$1	276	24	64	16.8648
fffff!!ccc####cccoooooocccccc]ffffffccc]	chr19:15512310-15512559(-)$1	249	95	135	16.2345
eeeeebb[ccc!!ddddoooooodddd]ccc]bb]eeeee	chr17:40716344-40716582(+)$1	238	43	83	14.0672
b[dddd[a[bb!!ddddoooooodddd333bb]a]dddd]	chr16:22336932-22337189(+)$1	257	124	164	15.6534
eee[ccc!!ccc[bbrrrrrrrrrbb]ccc333ccc]eee	chr6:79679532-79679777(-)$1	245	106	146	13.7549
cc[ccc"""bb[eeeeerrrrrrrrreeeee]bb333ccc	chr3:58097381-58097646(+)$1	265	17	57	12.2248
"ccc[ccc[bb[a[cccmmmmccc]a]bb]ccc]ccc333	chr20:60903371-60903664(-)$1	293	160	200	12.3534
eee!!dddd"""eeeeeooooooeeeeedddd4444eeee	chr16:697263-697525(+)$1	262	159	199	13.2462
gg!!dddd"""eeeeebboooooobb]eeeee]dddd22g	chr5:179047898-179048159(-)$1	261	114	154	12.7839
c[==========[bbaooooooa]bb]==========]cc	chr3:48670945-48671235(-)$1	290	119	159	17.2204
[ccc[a[dddd"""ddddrrrrrrrrrdddd333dddd]a	chr19:10224166-10224411(+)$1	245	87	127	12.3853
Eeeeee[dddd[a[cccooooooccc]adddd]eeeee::	chr2:27258296-27258570(+)$1	274	185	225	13.1620
bb[ggggggg####cccnnnnnccc333ggggggg]bb]f	chr20:39791675-39791970(+)$1	295	179	219	13.6771

#otherMatches

#Seq PSSM
GUGCGGGGAGGGACCUCUGAACUGAGCUCCUCAUCUGCCC	chr22:50689208-50689477(-)$1	269	100	140	15.3873
GUAAGCUUCAGAAGAACUGGUUUGUUUACAUGCAAGCUUA	chr3:156868052-156868331(-)$1	279	102	142	16.5130
CUCUGUGCUAUGGAAGCUUGCUGUGUGCUUACAUCAGCCC	chrX:70464194-70464474(-)$1	280	21	61	14.3869
UCGCCCAGGUGCAGUCGCCGUUCUGAGUGCUCGAGGGGCC	chr3:48463106-48463343(-)$1	237	120	160	15.7525
GUCCUAGCAGACACCUACGACUCAGUUUAUCUGCAUCCGG	chrX:48664625-48664878(+)$1	253	207	247	12.2419
GCGGUGCAUAUGGUCAGCACAGAUUGGCCAAUCGCACCCC	chr22:19966486-19966752(-)$1	266	105	145	13.6895
GAAGAGUGACAGUGCCCUCCCGCAGGCGUCCUGCCUCUGC	chr1:31896391-31896670(+)$1	279	123	163	12.9973
UCCAGGAGCAGUAUGUGUUUAUCCACGAUGCGAUCCUGGA	chr18:8378103-8378367(+)$1	264	154	194	16.2886
GUCGGGACUGGAGCUUGAACCAGAAGAGCCUCCCGGCUGG	chr19:42402425-42402694(+)$1	269	198	238	13.0901
UCCUUGCUGUGUUUAUAGUACAAGUUGUGCAAAGUGAGGA	chrY:2722464-2722749(+)$1	285	158	198	13.1915
GAGGCCCAAGAGCUGCCCCUCAUGCUCUGGGUCUCUCCUA	chr16:30767765-30768043(+)$1	278	104	144	12.6130
CUUUUUUUCUCAGGCAGAAGCUCCUCCUGGGGUAGAGACA	chr16:71956258-71956504(+)$1	246	105	145	13.4733
GGGCUGCCUGACGCCCGCCCGCCUGGAGCCGCAGCCCACG	chr20:62373901-62374154(+)$1	253	149	189	15.5036
GCGCUGUCCAGCCUGAGUAUCCUCUUCCAGAUGGCCAGAU	chr20:61595383-61595689(+)$1	306	115	155	15.4657
CAAACUCCGCUGGGUAGAGCUGACUGCCAUCGUGAGUACC	chr11:43469386-43469668(+)$1	282	217	257	13.1369
CAUUCCAAACGAUGUAAGUGUAGUUAGGUUGCAUGGGAUG	chr12:53862394-53862663(+)$1	269	209	249	16.3460
AAGUUCCCUGCACAGUACCCAAACAACGCCGCCCCUUCCU	chr16:74946104-74946386(-)$1	282	195	235	14.8620
CGCAGGAAGAGGCAGCUGGCUUCACAGAUUUCUUACUGCC	chr6:35803153-35803418(-)$1	265	225	265	12.0540
UGUCCGGGGUCGGAGCCUCACCUGGUGAAGAUACAGAACA	chr2:242695107-242695392(+)$1	285	26	66	18.7001
CCGGGGCGAGGUCUCGGCCUGAUGGCUGCCCGCACCCGCC	chr3:49723273-49723534(-)$1	261	95	135	11.6977
GUGGGAAGGCAUCACAGAUCCUGGCUAGAUCCUUUCUACU	chr2:220100271-220100534(+)$1	263	64	104	15.4006
UUCUUUCAGAUCGAAGCAAAGCUGAGAUGGAUUUGAAGGA	chr20:45878081-45878347(-)$1	266	155	195	14.8016
CCAGGCCCAGCUCUGAGCACCCACUCAAGGGCUGCCCUGA	chr20:61588627-61588916(+)$1	289	62	102	16.5372
GCUGGCCACAUCGCUGGACGCCACCUGUGACGUUGCCUGC	chr16:722567-722809(+)$1	242	161	201	12.6860
UGUCCCUUGUCUUCCAGGUGAGACUGUGGAGAUGAGAAGG	chr22:42557247-42557502(-)$1	255	121	161	15.0187
CCGCUGCUGGUGAAGGACUUCAACCUGCUUCGCUGGCUUG	chr7:65439585-65439813(-)$1	228	146	186	13.4741
UCCUGUCAUAUGGAUAUUCAUGACCUGUGUUCUUUUGGAA	chr16:87369738-87370025(-)$1	287	114	154	12.3343
CAUCCUGAUAUUCGAGACACCUAUCUCUGGGGCAGGGAGA	chr19:11313284-11313537(-)$1	253	63	103	14.4386
ACAAAACGUUGCCUCUUUUCUCUAGGUGGCUUUCUUCCUC	chr20:21310981-21311237(+)$1	256	112	152	13.1113
GCCGUGAGUUUGUUGGGUGUCUAACUGAACAAUUUGCUGC	chr16:24965937-24966196(-)$1	259	100	140	13.2231
AGAGCUCGACCUCAAAGGUGUUAGUGCUUUGGGGUCAAGG	chr9:131184999-131185257(+)$1	258	47	87	14.7568
ggcucacuuucuaucagccagcaacccugguggaaagagg	chr3:197260313-197260661(-)$1	348	54	94	15.2037
AAAAAUUAUUGUGAAGACAUGCAUUUUAAAAAUAGUUUUU	chr1:207958265-207958525(+)$1	260	220	260	18.6292
UGGGGGCAGGAGCUGGAGCUGGAUGGAGGGCUGCCCUGAC	chr9:133491587-133491868(+)$1	281	18	58	12.6934
UGCUGGUUUGCCAACUGACAAAAAGAAAGGUGGGCCAUCU	chr15:101825896-101826152(-)$1	256	158	198	13.4032
ACUCAGCAUAUACAGUAUAGUUUAUCUGCUCUAUUUCUGU	chr1:25570850-25571143(-)$1	293	107	147	14.1792
CCAGGAAGAAGCUUCCAGAACCCGAUUGGCCUUCCUGGCU	chr20:62320250-62320515(+)$1	265	14	54	13.4371
GAGGGCCGCGCACCGAGACUAAAUUCUCCUUCCGGCCAGA	chr11:64815104-64815395(-)$1	291	146	186	15.3207
ACAGCUGCUCAGCAGCAGCAGUAUGCACUGGCAGCUGCUC	chr1:31454127-31454409(-)$1	282	196	236	18.5626
CCCGGGGCCCUGACCGUCGUCUCUGUCGCCAUCAGUAUGC	chr19:36297628-36297897(-)$1	269	130	170	13.0147
CAGUGGCUCUCCCUCUUUAAACCAAGUUGGACGCCAGAUG	chrX:153579296-153579572(-)$1	276	24	64	16.8648
GUGAGGGAUCCUGAGGGGCUCCACCUGAUGCUCACCCCAU	chr19:15512310-15512559(-)$1	249	95	135	16.2345
GGGGGGGCAGGUUGGAUGUCAGGGUCUUCCUCUCACUCCC	chr17:40716344-40716582(+)$1	238	43	83	14.0672
AGCAGUGCUGCCUCCCUCCCCGCAGGGCCUGCCGGGCUGG	chr16:22336932-22337189(+)$1	257	124	164	15.6534
UAUGUGACCUAAUCAAUUUGUUUCUGUUUGUAAUUAGAUA	chr6:79679532-79679777(-)$1	245	106	146	13.7549
AAGUCUGCUCACCACUCGCUAAGUCAGAGUGAUGCUAAGG	chr3:58097381-58097646(+)$1	265	17	57	12.2248
CAGCCUGUGACUGCGGUGCCCGCCUCUGUGACGAGCUCAC	chr20:60903371-60903664(-)$1	293	160	200	12.3534
GCCAAGGCUUGUGUUCAAUCGUGUGAAUGGCCGGCGGGCC	chr16:697263-697525(+)$1	262	159	199	13.2462
CUCUUUCAGUAUUCAAGUCAAACAACGUUGAAAUGGAUUG	chr5:179047898-179048159(-)$1	261	114	154	12.7839
UUGGGCCAGGGAUGCCUUCACUGUGUCUCUCUGGUCUUGC	chr3:48670945-48671235(-)$1	290	119	159	17.2204
CAGGAGCCGCCUUAUGGGGGAAUAGGGCUCAGCUGGUGAC	chr19:10224166-10224411(+)$1	245	87	127	12.3853
AGCCGGGAGCUACGUGGGAUCAUCCGAGGGCUGCUGGCGA	chr2:27258296-27258570(+)$1	274	185	225	13.1620
GCCGGAGCUUUGCCGAGUGUCCCUUCCUGAGUUCCAGCAG	chr20:39791675-39791970(+)$1	295	179	219	13.6771

#DB
(.((((((((((..(((......))).))))).)))))))	chr22:50689208-50689477(-)$1	1	100	140	15.3873
((((((((((...((((......))))...)).)))))))	chr3:156868052-156868331(-)$1	1	102	142	16.5130
(...(.((((((..(((.........)))..))).)))).	chrX:70464194-70464474(-)$1	1	21	61	14.3869
).((((..(.(((.(((......))).))).)...)))))	chr3:48463106-48463343(-)$1	1	120	160	15.7525
(.((..(((((.....((......))...)))))....))	chrX:48664625-48664878(+)$1	1	207	247	12.2419
(.(((((...(((((((......)))))))...)))))((	chr22:19966486-19966752(-)$1	1	105	145	13.6895
..((((.(.(((.(((((.....))).)).))))))))..	chr1:31896391-31896670(+)$1	1	123	163	12.9973
(((((((...(((((((......))).))))..)))))))	chr18:8378103-8378367(+)$1	1	154	194	16.2886
(((((((..((..(((.......)))..))))))))))).	chr19:42402425-42402694(+)$1	1	198	238	13.0901
((((((((.(((.((..........)).))).))))))))	chrY:2722464-2722749(+)$1	1	158	198	13.1915
((((((((.((((..........)))))))))))))))))	chr16:30767765-30768043(+)$1	1	104	144	12.6130
((.....(((((((.((......))))))))).)))))((	chr16:71956258-71956504(+)$1	1	105	145	13.4733
(((((((.....(((((......))).)).))))))))))	chr20:62373901-62374154(+)$1	1	149	189	15.5036
.(((((.(((..(((((......))..))).))).)))..	chr20:61595383-61595689(+)$1	1	115	155	15.4657
...((((((...(((((......)))))..)).))))...	chr11:43469386-43469668(+)$1	1	217	257	13.1369
(((((((..((((.(((......))).))))..)))))))	chr12:53862394-53862663(+)$1	1	209	249	16.3460
(((....(.((...((......))...)).)...))))..	chr16:74946104-74946386(-)$1	1	195	235	14.8620
.((((..(((((...(((......))).)))))..)))).	chr6:35803153-35803418(-)$1	1	225	265	12.0540
(((.(...(((...(((......)))...)))...).)))	chr2:242695107-242695392(+)$1	1	26	66	18.7001
(.((((((.(((...((((....)))))))))).))))))	chr3:49723273-49723534(-)$1	1	95	135	11.6977
(((((((((.(((.(((...)))....)))))))))))))	chr2:220100271-220100534(+)$1	1	64	104	15.4006
)(((((((((((.((((...)))....).)))))))))))	chr20:45878081-45878347(-)$1	1	155	195	14.8016
(((((..((((((((((......))).))))))).)))).	chr20:61588627-61588916(+)$1	1	62	102	16.5372
((.(((.((.((((.((......)).)))).)).))).))	chr16:722567-722809(+)$1	1	161	201	12.6860
.))))((((((((((((......))).)))))))))..((	chr22:42557247-42557502(-)$1	1	121	161	15.0187
(((..((((((((((.(........).)))))))))).))	chr7:65439585-65439813(-)$1	1	146	186	13.4741
((((.(((...((((((.........))))))...))).)	chr16:87369738-87370025(-)$1	1	114	154	12.3343
(..(((.(.....((((......))))).)))..))))).	chr19:11313284-11313537(-)$1	1	63	103	14.4386
))..))))))(((.(((......))).)))(((((((...	chr20:21310981-21311237(+)$1	1	112	152	13.1113
((.(((((((.(((.(((.....))).)))))))))).))	chr16:24965937-24966196(-)$1	1	100	140	13.2231
..((((.((((((((((.........))))))))))..))	chr9:131184999-131185257(+)$1	1	47	87	14.7568
(((((.(((((((((((.........))))))))))).))	chr3:197260313-197260661(-)$1	1	54	94	15.2037
((((((((((...((((......))))...))))))))))	chr1:207958265-207958525(+)$1	1	220	260	18.6292
(.(((((((...(((........)))....))))))).))	chr9:133491587-133491868(+)$1	1	18	58	12.6934
.(.(((((((((..((.......))...))))))))).).	chr15:101825896-101826152(-)$1	1	158	198	13.4032
(..(((.(.(((.((((.........)))).))).)))).	chr1:25570850-25571143(-)$1	1	107	147	14.1792
((((((((..(((....(....)....)))))))))))).	chr20:62320250-62320515(+)$1	1	14	54	13.4371
((.(((((.(....((((......))))...))))))...	chr11:64815104-64815395(-)$1	1	146	186	15.3207
((((((((.(((..(((......))).))))))))))...	chr1:31454127-31454409(-)$1	1	196	236	18.5626
((((((...((((.((.(......).))...))))....)	chr19:36297628-36297897(-)$1	1	130	170	13.0147
(..((((..(((..(((......)))..))).))))))).	chrX:153579296-153579572(-)$1	1	24	64	16.8648
(((((..(((....(((......)))))).))))))))).	chr19:15512310-15512559(-)$1	1	95	135	16.2345
(((((((.(((..((((......)))).))).)).)))))	chr17:40716344-40716582(+)$1	1	43	83	14.0672
(.((((.(.((..((((......))))...)).).)))).	chr16:22336932-22337189(+)$1	1	124	164	15.6534
(((.(((..(((.((.........)).)))...))).)))	chr6:79679532-79679777(-)$1	1	106	146	13.7549
((.(((...((.(((((.........))))).))...)))	chr3:58097381-58097646(+)$1	1	17	57	12.2248
.(((.(((.((.(.(((....))).).)).))).)))...	chr20:60903371-60903664(-)$1	1	160	200	12.3534
(((..((((...(((((......)))))))))....))))	chr16:697263-697525(+)$1	1	159	199	13.2462
((..((((...(((((((......)).))))).))))..)	chr5:179047898-179048159(-)$1	1	114	154	12.7839
(.((((((((((.(((......).)).)))))))))).))	chr3:48670945-48671235(-)$1	1	119	159	17.2204
.(((.(.((((...((((.........))))...)))).)	chr19:10224166-10224411(+)$1	1	87	127	12.3853
((((((.((((.(.(((......))).))))).)))))..	chr2:27258296-27258570(+)$1	1	185	225	13.1620
((.(((((((....(((.....)))...))))))).)).)	chr20:39791675-39791970(+)$1	1	179	219	13.6771

#PSSM
e : 0.16	c : 0.13	b : 0.13	g : 0.09	= : 0.07	i : 0.05	d : 0.05	f : 0.05	[ : 0.05	" : 0.03	F : 0.01	# : 0.01	: : 0.01	B : 0.01	] : 0.01	! : 0.01	E : 0.01	
e : 0.13	[ : 0.11	g : 0.09	= : 0.09	b : 0.09	d : 0.09	c : 0.09	! : 0.07	i : 0.05	" : 0.03	: : 0.03	f : 0.03	# : 0.01	a : 0.01	
d : 0.16	e : 0.15	= : 0.11	[ : 0.11	g : 0.09	c : 0.07	! : 0.07	i : 0.05	b : 0.03	f : 0.03	" : 0.01	$ : 0.01	# : 0.01	2 : 0.01	
d : 0.16	c : 0.15	e : 0.13	g : 0.13	= : 0.11	i : 0.07	! : 0.05	[ : 0.03	f : 0.03	" : 0.01	b : 0.01	$ : 0.01	# : 0.01	2 : 0.01	
d : 0.18	g : 0.13	c : 0.13	e : 0.11	= : 0.11	i : 0.07	! : 0.05	[ : 0.05	f : 0.05	a : 0.03	$ : 0.01	# : 0.01	
c : 0.16	d : 0.15	g : 0.13	= : 0.13	i : 0.09	e : 0.07	! : 0.07	[ : 0.03	f : 0.03	$ : 0.01	# : 0.01	" : 0.01	b : 0.01	a : 0.01	
[ : 0.16	= : 0.15	g : 0.13	i : 0.09	c : 0.09	e : 0.07	! : 0.07	d : 0.07	" : 0.05	$ : 0.01	# : 0.01	f : 0.01	b : 0.01	
= : 0.16	c : 0.11	g : 0.11	! : 0.09	" : 0.09	a : 0.09	e : 0.07	i : 0.07	d : 0.07	b : 0.03	$ : 0.01	f : 0.01	[ : 0.01	
[ : 0.18	= : 0.13	" : 0.11	c : 0.09	! : 0.09	g : 0.09	e : 0.05	b : 0.05	d : 0.05	$ : 0.03	i : 0.03	a : 0.01	f : 0.01	
c : 0.22	" : 0.13	b : 0.11	= : 0.11	d : 0.09	g : 0.07	e : 0.05	[ : 0.05	$ : 0.03	i : 0.03	f : 0.01	! : 0.01	a : 0.01	
c : 0.26	" : 0.13	d : 0.13	b : 0.09	= : 0.09	e : 0.05	g : 0.05	# : 0.05	$ : 0.03	i : 0.03	! : 0.01	[ : 0.01	
c : 0.24	" : 0.15	d : 0.09	= : 0.09	! : 0.07	e : 0.05	$ : 0.05	g : 0.05	# : 0.05	[ : 0.05	i : 0.03	f : 0.01	
! : 0.15	" : 0.13	c : 0.13	[ : 0.11	d : 0.09	e : 0.07	g : 0.05	= : 0.05	# : 0.05	$ : 0.03	a : 0.03	b : 0.01	i : 0.01	f : 0.01	
d : 0.15	[ : 0.13	! : 0.09	b : 0.09	" : 0.09	c : 0.07	e : 0.07	# : 0.07	g : 0.05	= : 0.05	$ : 0.01	s : 0.01	a : 0.01	i : 0.01	f : 0.01	
c : 0.39	d : 0.15	b : 0.13	e : 0.07	[ : 0.05	= : 0.05	" : 0.03	$ : 0.01	g : 0.01	s : 0.01	f : 0.01	# : 0.01	
c : 0.41	d : 0.16	b : 0.11	e : 0.07	s : 0.03	= : 0.03	$ : 0.01	g : 0.01	[ : 0.01	f : 0.01	q : 0.01	# : 0.01	r : 0.01	a : 0.01	
c : 0.39	d : 0.16	b : 0.09	e : 0.05	p : 0.03	s : 0.03	o : 0.03	= : 0.03	g : 0.01	a : 0.01	f : 0.01	q : 0.01	# : 0.01	[ : 0.01	r : 0.01	
o : 0.49	r : 0.13	c : 0.05	d : 0.05	b : 0.03	p : 0.03	s : 0.03	l : 0.03	q : 0.03	a : 0.03	m : 0.01	n : 0.01	
o : 0.58	r : 0.15	n : 0.05	p : 0.03	s : 0.03	l : 0.03	q : 0.03	m : 0.03	d : 0.01	
o : 0.58	r : 0.15	n : 0.05	m : 0.05	p : 0.03	s : 0.03	l : 0.03	q : 0.03	
o : 0.58	r : 0.15	n : 0.05	m : 0.05	p : 0.03	s : 0.03	c : 0.03	q : 0.03	
o : 0.58	r : 0.15	n : 0.05	c : 0.05	p : 0.03	s : 0.03	m : 0.03	q : 0.03	
o : 0.54	r : 0.15	c : 0.07	n : 0.03	p : 0.03	s : 0.03	q : 0.03	a : 0.03	b : 0.01	m : 0.01	
c : 0.35	r : 0.15	d : 0.13	o : 0.09	b : 0.09	4 : 0.05	e : 0.03	g : 0.01	s : 0.01	q : 0.01	] : 0.01	
c : 0.35	d : 0.15	b : 0.15	r : 0.13	4 : 0.05	e : 0.03	g : 0.01	s : 0.01	3 : 0.01	q : 0.01	a : 0.01	] : 0.01	
c : 0.33	d : 0.15	r : 0.13	b : 0.09	3 : 0.05	4 : 0.05	g : 0.03	e : 0.03	] : 0.03	a : 0.03	2 : 0.01	
] : 0.32	d : 0.18	3 : 0.09	4 : 0.07	c : 0.05	2 : 0.05	e : 0.05	g : 0.03	b : 0.03	= : 0.03	f : 0.01	r : 0.01	
c : 0.20	3 : 0.13	d : 0.11	e : 0.09	b : 0.09	= : 0.09	g : 0.05	] : 0.05	a : 0.05	2 : 0.03	i : 0.01	f : 0.01	4 : 0.01	
c : 0.26	3 : 0.13	d : 0.13	b : 0.09	= : 0.09	e : 0.07	g : 0.07	] : 0.03	i : 0.03	2 : 0.01	f : 0.01	4 : 0.01	
c : 0.26	d : 0.13	= : 0.11	e : 0.09	3 : 0.09	] : 0.09	g : 0.07	2 : 0.03	i : 0.03	b : 0.01	f : 0.01	4 : 0.01	
c : 0.15	= : 0.15	g : 0.15	e : 0.09	d : 0.09	] : 0.07	3 : 0.07	i : 0.07	b : 0.05	f : 0.03	2 : 0.01	a : 0.01	
c : 0.15	= : 0.15	g : 0.15	e : 0.07	b : 0.07	3 : 0.07	i : 0.07	] : 0.07	d : 0.05	a : 0.03	2 : 0.03	f : 0.03	
= : 0.16	] : 0.13	3 : 0.13	g : 0.13	c : 0.11	i : 0.07	e : 0.05	2 : 0.05	b : 0.05	d : 0.03	f : 0.01	4 : 0.01	
g : 0.16	= : 0.16	e : 0.11	i : 0.09	3 : 0.09	c : 0.07	d : 0.07	] : 0.05	a : 0.03	2 : 0.03	b : 0.03	f : 0.01	4 : 0.01	
= : 0.16	g : 0.15	d : 0.13	e : 0.11	] : 0.11	i : 0.09	3 : 0.07	c : 0.07	4 : 0.03	2 : 0.01	f : 0.01	
d : 0.18	= : 0.16	e : 0.13	c : 0.13	g : 0.13	i : 0.09	4 : 0.05	a : 0.03	f : 0.01	3 : 0.01	] : 0.01	
c : 0.16	d : 0.16	e : 0.15	= : 0.15	g : 0.13	i : 0.07	4 : 0.03	] : 0.03	: : 0.01	2 : 0.01	3 : 0.01	b : 0.01	
c : 0.16	e : 0.15	d : 0.13	] : 0.13	= : 0.09	4 : 0.07	i : 0.05	g : 0.03	b : 0.03	2 : 0.03	3 : 0.03	: : 0.01	n : 0.01	
c : 0.16	d : 0.13	b : 0.09	4 : 0.09	= : 0.09	e : 0.09	i : 0.05	g : 0.05	3 : 0.05	] : 0.05	a : 0.03	n : 0.01	2 : 0.01	: : 0.01	
c : 0.11	e : 0.11	3 : 0.09	] : 0.09	= : 0.09	b : 0.07	g : 0.07	4 : 0.07	: : 0.07	d : 0.05	f : 0.03	i : 0.01	H : 0.01	n : 0.01	2 : 0.01	a : 0.01	

#score	761.2478375799583
#seq	53
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_UTR_m1_run1.txt

#BEAR
""bb[ccc####bbpppppppbb333cccbb]b	chr3:184044922-184045214(+)$1	292	127	160	9.9197
[ccc[ccc####bbvvvvvvvvvvvvvbb4444	chr17:7082235-7082519(-)$1	284	5	38	10.7315
eeee[eeeee!!bboooooobb]eeeee]eeee	chr4:174253031-174253318(-)$1	287	205	238	10.3403
!bb!!dddd####bboooooobb22dddd4444	chr16:30087575-30087857(+)$1	282	184	217	13.3034
!cccdddd####bb[bblllbbbb333dddd]c	chr20:43029850-43030149(+)$1	299	151	184	10.9675
ffff!!ccc!!ccc[annnnna]ccccccffff	chr11:130013183-130013419(+)$1	236	128	161	9.8976
dd!!ccc!!bb"""bbmmmmbb4444bb4444c	chr12:57504877-57505160(-)$1	283	224	257	9.8613
eee!!dddd!!bbrrrrrrrrrbb22dddd22e	chr14:102549353-102549619(-)$1	266	39	72	10.3983
========####cccooooooccc22=======	chr11:67810715-67811052(+)$1	337	284	317	16.5289
d==========[ddddllldddd]=========	chr12:26985754-26986012(-)$1	258	24	57	11.4256
Gccc[ffffff[cccoooooocccffffff]cc	chr11:130011740-130012027(+)$1	287	106	139	11.4161
==============oooooo=============	chr8:124381215-124381517(-)$1	302	55	88	13.9590
[ddddbb[ddddbb!!aooooooa22bb]dddd	chr14:21546492-21546748(+)$1	256	136	169	9.5553
cc[dddd!!cccrrrrrrrrrccc22dddd]cc	chr22:41487695-41487988(+)$1	293	147	180	11.1548
"ccc[ccc"""ddddlllddddcccccc333dd	chr3:48456292-48456542(-)$1	250	194	227	11.4532
gggg[ccc!!cccqqqqqqqqccc]cccggggg	chr17:80193762-80194054(+)$1	292	18	51	9.9805
d==========[ddddllldddd]=========	chr12:26985874-26986096(-)$1	222	108	141	11.4256
hhhhhhhh"""ddddoooooodddd333hhhhh	chr17:79803647-79803853(-)$1	206	61	94	10.8188
ffffff[dddd[cccooooooccc]dddd22ff	chr14:102551608-102551860(-)$1	252	168	201	11.4012
c!!ddddeeeeecccooooooccc22eeeee44	chr17:1665246-1665480(+)$1	234	95	128	12.3445
ddd"""bb[a[cccrrrrrrrrrccc]a]bb]d	chr16:28846373-28846609(+)$1	236	110	143	10.5733
ee[ddddccc[ddddoooooodddd]ccc]ddd	chr9:117050890-117051131(+)$1	241	22	55	11.6399
d[bbcccbb####cccmmmmccc333bb]ccc]	chr14:102550932-102551190(-)$1	258	89	122	10.7943
ggggg####ffffffooooooffffff4444gg	chr19:51857296-51857633(-)$1	337	198	231	11.3688
e"""bb!!gggggggooooooggggggg22bb6	chr9:100777605-100777868(+)$1	263	15	48	10.2798
[ggggggg####ccclllccc4444ggggggg]	chr12:49666601-49666860(+)$1	259	176	209	12.0735
C:ddddbb[bb[cccooooooccc]bbbb]ddd	chr17:37617680-37617971(+)$1	291	173	206	9.8079

#otherMatches

#Seq PSSM
GACCGCCUAGAGCGGAGUGAACGGGGAGGGGAC	chr3:184044922-184045214(+)$1	292	127	160	9.9197
GAGCAAGUAAAAUGGGAAGAGAGGUGGCGGGAG	chr17:7082235-7082519(-)$1	284	5	38	10.7315
UUUUGUAUAGCUGAUAAGAUUCUCUGUAGAGAA	chr4:174253031-174253318(-)$1	287	205	238	10.3403
AGGAGAGCGAAGUCAAGGCCCUGUGCGCUAAGG	chr16:30087575-30087857(+)$1	282	184	217	13.3034
AGGCAGGGAGAAUGCGACUCUCCAAAACCCUCG	chr20:43029850-43030149(+)$1	299	151	184	10.9675
CCUACAAAUACCUGGAGCAGAUGCAGAUUUAGG	chr11:130013183-130013419(+)$1	236	128	161	9.8976
AGAAGACAGCAGAGGGGUUGCCGAGGUGAGGGG	chr12:57504877-57505160(-)$1	283	224	257	9.8613
UUAGAAGUGAUCUAUAUGAUUGAGCCCAUUGAU	chr14:102549353-102549619(-)$1	266	39	72	10.3983
AGAGCGGGACCCCAGAGUCAGCUGAGCCUGCUC	chr11:67810715-67811052(+)$1	337	284	317	16.5289
GCCGGGGAGGCGGCGGCGGCUGCGGCUUCUCUG	chr12:26985754-26986012(-)$1	258	24	57	11.4256
CUGAGUAGCAGUGCUCUCAUUGGCCUGCUGGUC	chr11:130011740-130012027(+)$1	287	106	139	11.4161
auauauauauauauauacaaauauauauauaua	chr8:124381215-124381517(-)$1	302	55	88	13.9590
GCUCCACUCCCAGCAGCAAGUACGAAGUAUGGG	chr14:21546492-21546748(+)$1	256	136	169	9.5553
GUGGGCAAGCAGGACGCCGGGCUGAGUGCUAAC	chr22:41487695-41487988(+)$1	293	147	180	11.1548
CUUGACAACCUGGUCUUUGACUUUGCAACACUG	chr3:48456292-48456542(-)$1	250	194	227	11.4532
AGCUCGUGUCCCUCCCCUGCCAGGCUGCAGCUG	chr17:80193762-80194054(+)$1	292	18	51	9.9805
GCCGGGGAGGCGGCGGCGGCUGCGGCUUCUCUG	chr12:26985874-26986096(-)$1	222	108	141	11.4256
GAAGACGUGGCUUUUGAUGAGAAAAAAAACGUC	chr17:79803647-79803853(-)$1	206	61	94	10.8188
AAUAAAGGAGAUUGUGAAGAAACAUUCUCAGUU	chr14:102551608-102551860(-)$1	252	168	201	11.4012
UGGAGCCCCCUCAGUGUGCAGGCUUAGAGGGAC	chr17:1665246-1665480(+)$1	234	95	128	12.3445
CAGCCUACCCCCCAAGCCCUUUAUGGUGAGUCC	chr16:28846373-28846609(+)$1	236	110	143	10.5733
CAACAGGGCCCAGGGCUGGCAUCCUUGGCACCU	chr9:117050890-117051131(+)$1	241	22	55	11.6399
AAUCCCGACGAUAUUACUAAUGAGGAGUACGGA	chr14:102550932-102551190(-)$1	258	89	122	10.7943
UCGCCGUCAGCUGUGGGCCUGCACAGUGCCAGG	chr19:51857296-51857633(-)$1	337	198	231	11.3688
AAAGUCAAUUUUUGUUACUGUACagaggaggaa	chr9:100777605-100777868(+)$1	263	15	48	10.2798
GAGCUGUGUGCAUGCUGAGCAAUACCACAGCUG	chr12:49666601-49666860(+)$1	259	176	209	12.0735
AAGGGGGCGUGAGGCACCUAGGCCGCGGCACCC	chr17:37617680-37617971(+)$1	291	173	206	9.8079

#DB
..((.(((....((.......))...))))).)	chr3:184044922-184045214(+)$1	1	127	160	9.9197
.(((.(((....((.............))....	chr17:7082235-7082519(-)$1	1	5	38	10.7315
((((.(((((..((......)).))))).))))	chr4:174253031-174253318(-)$1	1	205	238	10.3403
.((..((((....((......))..))))....	chr16:30087575-30087857(+)$1	1	184	217	13.3034
.(((((((....((.((...))))...)))).)	chr20:43029850-43030149(+)$1	1	151	184	10.9675
((((..(((..(((.(.....).))))))))))	chr11:130013183-130013419(+)$1	1	128	161	9.8976
((..(((..((...((....))....))....)	chr12:57504877-57505160(-)$1	1	224	257	9.8613
(((..((((..((.........))..))))..)	chr14:102549353-102549619(-)$1	1	39	72	10.3983
((((((((....(((......)))..)))))))	chr11:67810715-67811052(+)$1	1	284	317	16.5289
)((((((((((.((((...)))).)))))))))	chr12:26985754-26986012(-)$1	1	24	57	11.4256
((((.((((((.(((......))))))))).))	chr11:130011740-130012027(+)$1	1	106	139	11.4161
((((((((((((((......)))))))))))))	chr8:124381215-124381517(-)$1	1	55	88	13.9590
.((((((.((((((..(......)..)).))))	chr14:21546492-21546748(+)$1	1	136	169	9.5553
((.((((..(((.........)))..)))).))	chr22:41487695-41487988(+)$1	1	147	180	11.1548
.(((.(((...((((...))))))))))...))	chr3:48456292-48456542(-)$1	1	194	227	11.4532
((((.(((..(((........))).))))))))	chr17:80193762-80194054(+)$1	1	18	51	9.9805
)((((((((((.((((...)))).)))))))))	chr12:26985874-26986096(-)$1	1	108	141	11.4256
((((((((...((((......))))...)))))	chr17:79803647-79803853(-)$1	1	61	94	10.8188
((((((.((((.(((......))).))))..))	chr14:102551608-102551860(-)$1	1	168	201	11.4012
(..((((((((((((......)))..)))))..	chr17:1665246-1665480(+)$1	1	95	128	12.3445
(((...((.(.(((.........))).).)).)	chr16:28846373-28846609(+)$1	1	110	143	10.5733
((.(((((((.((((......)))).))).)))	chr9:117050890-117051131(+)$1	1	22	55	11.6399
(.(((((((....(((....)))...)).))).	chr14:102550932-102551190(-)$1	1	89	122	10.7943
(((((....((((((......))))))....))	chr19:51857296-51857633(-)$1	1	198	231	11.3688
(...((..(((((((......)))))))..)).	chr9:100777605-100777868(+)$1	1	15	48	10.2798
.(((((((....(((...)))....))))))).	chr12:49666601-49666860(+)$1	1	176	209	12.0735
).((((((.((.(((......))).)))).)))	chr17:37617680-37617971(+)$1	1	173	206	9.8079

#PSSM
d : 0.18	e : 0.14	[ : 0.11	" : 0.07	! : 0.07	f : 0.07	= : 0.07	c : 0.07	g : 0.07	G : 0.03	h : 0.03	C : 0.03	
c : 0.18	= : 0.14	e : 0.11	d : 0.11	g : 0.11	" : 0.07	f : 0.07	b : 0.03	h : 0.03	! : 0.03	[ : 0.03	: : 0.03	
c : 0.14	= : 0.14	b : 0.11	d : 0.11	g : 0.11	e : 0.07	f : 0.07	! : 0.07	[ : 0.07	h : 0.03	" : 0.03	
d : 0.18	c : 0.14	= : 0.14	! : 0.11	g : 0.11	b : 0.07	f : 0.07	" : 0.07	e : 0.03	h : 0.03	
[ : 0.22	d : 0.22	= : 0.14	! : 0.11	c : 0.07	g : 0.07	h : 0.03	f : 0.03	" : 0.03	b : 0.03	
d : 0.25	c : 0.22	= : 0.14	f : 0.07	b : 0.07	e : 0.03	! : 0.03	h : 0.03	" : 0.03	# : 0.03	g : 0.03	
c : 0.25	d : 0.22	= : 0.14	b : 0.11	e : 0.03	f : 0.03	h : 0.03	[ : 0.03	# : 0.03	! : 0.03	g : 0.03	
c : 0.22	d : 0.14	= : 0.14	! : 0.11	b : 0.11	e : 0.07	f : 0.03	[ : 0.03	h : 0.03	# : 0.03	g : 0.03	
# : 0.22	d : 0.14	! : 0.11	= : 0.11	e : 0.07	c : 0.07	" : 0.07	[ : 0.07	f : 0.03	b : 0.03	g : 0.03	
# : 0.25	! : 0.11	= : 0.11	e : 0.07	b : 0.07	f : 0.07	d : 0.07	c : 0.07	" : 0.07	a : 0.03	g : 0.03	
# : 0.25	! : 0.11	= : 0.11	b : 0.07	f : 0.07	d : 0.07	c : 0.07	" : 0.07	[ : 0.07	e : 0.03	g : 0.03	
# : 0.25	[ : 0.18	c : 0.14	d : 0.14	! : 0.03	" : 0.03	b : 0.03	= : 0.03	e : 0.03	f : 0.03	g : 0.03	
c : 0.33	b : 0.22	d : 0.18	# : 0.07	" : 0.03	= : 0.03	r : 0.03	f : 0.03	g : 0.03	
c : 0.33	b : 0.22	d : 0.18	r : 0.07	" : 0.03	= : 0.03	q : 0.03	f : 0.03	g : 0.03	
c : 0.25	d : 0.18	r : 0.11	o : 0.07	b : 0.07	[ : 0.07	p : 0.03	v : 0.03	! : 0.03	q : 0.03	f : 0.03	g : 0.03	
o : 0.44	r : 0.11	b : 0.07	d : 0.07	l : 0.07	p : 0.03	v : 0.03	a : 0.03	! : 0.03	q : 0.03	c : 0.03	
o : 0.44	l : 0.14	r : 0.11	m : 0.07	p : 0.03	v : 0.03	b : 0.03	n : 0.03	a : 0.03	q : 0.03	
o : 0.48	l : 0.18	r : 0.11	m : 0.07	p : 0.03	v : 0.03	n : 0.03	q : 0.03	
o : 0.48	l : 0.11	r : 0.11	m : 0.07	p : 0.03	v : 0.03	n : 0.03	d : 0.03	q : 0.03	c : 0.03	
o : 0.48	r : 0.11	d : 0.11	m : 0.07	p : 0.03	v : 0.03	l : 0.03	n : 0.03	q : 0.03	c : 0.03	
o : 0.40	b : 0.11	r : 0.11	d : 0.11	c : 0.07	p : 0.03	v : 0.03	n : 0.03	= : 0.03	q : 0.03	
c : 0.29	b : 0.18	d : 0.18	r : 0.07	v : 0.03	a : 0.03	= : 0.03	o : 0.03	f : 0.03	g : 0.03	4 : 0.03	
c : 0.33	b : 0.14	d : 0.14	] : 0.07	4 : 0.07	v : 0.03	= : 0.03	o : 0.03	r : 0.03	f : 0.03	g : 0.03	
c : 0.37	3 : 0.07	b : 0.07	4 : 0.07	] : 0.07	d : 0.07	v : 0.03	e : 0.03	2 : 0.03	= : 0.03	a : 0.03	f : 0.03	g : 0.03	
2 : 0.22	3 : 0.11	c : 0.11	= : 0.11	] : 0.11	4 : 0.07	f : 0.07	d : 0.07	v : 0.03	e : 0.03	g : 0.03	
2 : 0.18	3 : 0.14	c : 0.14	= : 0.11	d : 0.07	f : 0.07	g : 0.07	v : 0.03	e : 0.03	4 : 0.03	] : 0.03	b : 0.03	
c : 0.18	d : 0.14	b : 0.14	= : 0.14	e : 0.07	3 : 0.07	f : 0.07	g : 0.07	v : 0.03	] : 0.03	
c : 0.18	b : 0.18	d : 0.18	= : 0.14	e : 0.07	g : 0.07	f : 0.03	3 : 0.03	a : 0.03	4 : 0.03	
d : 0.18	] : 0.14	= : 0.14	c : 0.11	b : 0.07	4 : 0.07	g : 0.07	f : 0.03	3 : 0.03	h : 0.03	e : 0.03	2 : 0.03	
4 : 0.14	d : 0.14	= : 0.14	b : 0.07	e : 0.07	f : 0.07	g : 0.07	2 : 0.07	] : 0.07	3 : 0.03	h : 0.03	c : 0.03	
4 : 0.14	d : 0.14	= : 0.14	b : 0.11	e : 0.07	2 : 0.07	] : 0.07	g : 0.07	f : 0.03	3 : 0.03	h : 0.03	c : 0.03	
4 : 0.14	= : 0.14	d : 0.14	] : 0.11	c : 0.11	g : 0.11	f : 0.07	e : 0.03	2 : 0.03	h : 0.03	b : 0.03	
d : 0.18	c : 0.14	= : 0.14	4 : 0.11	e : 0.07	f : 0.07	g : 0.07	] : 0.07	b : 0.03	h : 0.03	6 : 0.03	

#score	303.42170568900355
#seq	27
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_UTR_m1_run1.txt

#BEAR
e[cccyyyyyyyyyyyyyyyycc	chr10:81072628-81072890(+)$1	262	90	113	20.1865
ddd[dddduuuuuuuuuuuuddd	chr10:114910656-114910974(+)$1	318	209	232	21.6866
"""ddddtttttttttttdddd3	chr19:3976337-3976567(-)$1	230	171	194	20.9828
gggggggwwwwwwwwwwwwwwgg	chr17:48459396-48459642(-)$1	246	64	87	21.7822
iiiii[bbuuuuuuuuuuuubb]	chr16:74486460-74486710(-)$1	250	146	169	20.8189
gggggggvvvvvvvvvvvvvggg	chr17:53400299-53400525(+)$1	226	94	117	22.4443
&&&ddddvvvvvvvvvvvvvddd	chr7:94295038-94295290(+)$1	252	214	237	21.5938
ffffffwwwwwwwwwwwwwwfff	chrX:100646407-100646653(+)$1	246	209	232	21.3994
e[eeeeevvvvvvvvvvvvveee	chr1:214210899-214211158(+)$1	259	195	218	23.3981
ddeeeeettttttttttteeeee	chr1:167759280-167759578(+)$1	298	9	32	20.9170
f!!cccxxxxxxxxxxxxxxxcc	chr1:92149008-92149236(-)$1	228	77	100	17.6345
::eeeeeuuuuuuuuuuuueeee	chr2:70504550-70504789(+)$1	239	116	139	21.2872
ccddddwwwwwwwwwwwwwwddd	chr2:54896147-54896362(+)$1	215	132	155	22.2783
f[cccyyyyyyyyyyyyyyyycc	chr11:64571444-64571695(-)$1	251	144	167	20.1629
$$$ddddtttttttttttdddd2	chr2:223806335-223806580(+)$1	245	157	180	20.2118
cccddddvvvvvvvvvvvvvddd	chr3:12939511-12939774(-)$1	263	228	251	23.0245
eeeeeeewwwwwwwwwwwwwwee	chr12:104743544-104743803(+)$1	259	44	67	22.3548
e[eeeeettttttttttteeeee	chr12:50157769-50158030(+)$1	261	232	255	21.1958
=======vvvvvvvvvvvvv===	chr2:188329984-188330209(-)$1	225	149	172	22.5899
hhhhhhhvvvvvvvvvvvvvhhh	chr8:141525380-141525769(+)$1	389	281	304	20.3384
c"""cccvvvvvvvvvvvvvccc	chr16:67470928-67471213(+)$1	285	87	110	22.8860
ffffffwwwwwwwwwwwwwwfff	chr8:22878966-22879235(-)$1	269	160	183	21.3994
c[cccxxxxxxxxxxxxxxxccc	chr20:17588175-17588533(+)$1	358	2	25	17.4673
cfffffftttttttttttfffff	chr19:2071575-2071815(-)$1	240	192	215	19.6018
:ffffffvvvvvvvvvvvvvfff	chr14:65406000-65406313(-)$1	313	229	252	21.3136
[a!!cccvvvvvvvvvvvvvccc	chr18:33571239-33571509(-)$1	270	119	142	22.9420
ggeeeeevvvvvvvvvvvvveee	chr1:230415236-230415482(+)$1	246	39	62	23.2901
ffffffwwwwwwwwwwwwwwfff	chr4:119736602-119736896(-)$1	294	207	230	21.3994
ee!!cccvvvvvvvvvvvvvccc	chr10:81072980-81073215(+)$1	235	32	55	22.7461
b[bb[bbuuuuuuuuuuuubb]b	chr16:74497152-74497367(-)$1	215	27	50	20.3946
'''ddddtttttttttttddddd	chr5:78074201-78074535(-)$1	334	241	264	19.3616
::eeeeevvvvvvvvvvvvveee	chr7:6063613-6063852(-)$1	239	29	52	21.7480
ddddddddtttttttttttdddd	chr15:58889211-58889474(-)$1	263	24	47	20.4403
:eeeeexxxxxxxxxxxxxxxee	chr20:30783369-30783621(-)$1	252	199	222	17.2014
dddd[bbwwwwwwwwwwwwwwbb	chr7:94296583-94296806(+)$1	223	0	23	20.6639
cceeeeewwwwwwwwwwwwwwee	chr14:65569026-65569313(-)$1	287	180	203	22.5234
ddddddddtttttttttttdddd	chr22:21141669-21141899(+)$1	230	52	75	20.4403
gggggyyyyyyyyyyyyyyyygg	chr3:52028034-52028242(-)$1	208	76	99	20.1173
"""ddddtttttttttttdddd3	chr19:3976284-3976525(-)$1	241	129	152	20.9828
d[bb[ccctttttttttttcccb	chr11:61734788-61735067(-)$1	279	169	192	19.9180
d:eeeeeuuuuuuuuuuuueeee	chr17:42397030-42397264(-)$1	234	92	115	21.9273
C::dddduuuuuuuuuuuudddd	chr5:179393710-179393973(-)$1	263	20	43	19.9292
:eeeeexxxxxxxxxxxxxxxee	chr17:37566033-37566312(-)$1	279	102	125	17.2014
dd[ddddvvvvvvvvvvvvvddd	chr12:46752327-46752588(-)$1	261	70	93	22.9576
:eeeeexxxxxxxxxxxxxxxee	chr14:21702188-21702483(-)$1	295	69	92	17.2014
eeeee[ccctttttttttttccc	chr13:30087218-30087458(-)$1	240	107	130	19.8542
ffffffwwwwwwwwwwwwwwfff	chr1:236139951-236140255(-)$1	304	36	59	21.3994
%eeeeewwwwwwwwwwwwwweee	chr16:69726972-69727226(+)$1	254	114	137	22.0967
ddddddxxxxxxxxxxxxxxxdd	chr21:27253103-27253365(-)$1	262	144	167	17.4411
""eeeeettttttttttteeeee	chr12:102315485-102315780(+)$1	295	187	210	21.2979
=======vvvvvvvvvvvvv===	chr8:38959304-38959550(+)$1	246	147	170	22.5899
cffffffuuuuuuuuuuuuffff	chr5:42801165-42801397(-)$1	232	46	69	21.4626
feeeeebbuuuuuuuuuuuubb]	chr1:93618094-93618338(-)$1	244	154	177	21.1200
$$$$ddddtttttttttttdddd	chr14:95059000-95059233(+)$1	233	123	146	20.0305
cffffffvvvvvvvvvvvvvfff	chr2:46611810-46612062(+)$1	252	158	181	22.0625
ggggddddtttttttttttdddd	chr13:95057441-95057738(+)$1	297	213	236	20.6809
"""ddddtttttttttttdddd3	chr7:92235557-92235827(-)$1	270	207	230	20.9828
::eeeeettttttttttteeeee	chr13:98043918-98044173(+)$1	255	146	169	19.5457
cc[ddddvvvvvvvvvvvvvddd	chr3:169866823-169867124(-)$1	301	68	91	23.1604

#otherMatches

#Seq PSSM
ACGUCCCACCUCCACACCCUUGG	chr10:81072628-81072890(+)$1	262	90	113	20.1865
GGCUCACUCCAUAGUUCGUAAGU	chr10:114910656-114910974(+)$1	318	209	232	21.6866
CACUUGAUGCCGUUUCUUUCAAU	chr19:3976337-3976567(-)$1	230	171	194	20.9828
AGAUUUCACGACUCAGAGAUAGA	chr17:48459396-48459642(-)$1	246	64	87	21.7822
GGUGUCUCGUUCAUCUCUCAGAA	chr16:74486460-74486710(-)$1	250	146	169	20.8189
CUGGUGGUCUCCUCGUCAAUCCA	chr17:53400299-53400525(+)$1	226	94	117	22.4443
UCUAACUAAAAUAAUUAAUAAGU	chr7:94295038-94295290(+)$1	252	214	237	21.5938
CCGGGUCUCUCUCCCUCCACGCC	chrX:100646407-100646653(+)$1	246	209	232	21.3994
UAUUUUUCUCACUUGCUUUAAAA	chr1:214210899-214211158(+)$1	259	195	218	23.3981
GCCUGUGUCAUGUUUCCUUACAG	chr1:167759280-167759578(+)$1	298	9	32	20.9170
UUUCAGUAUAAAGAUCACCCGUU	chr1:92149008-92149236(-)$1	228	77	100	17.6345
AACACACGGUUCUAAUUAAGUGU	chr2:70504550-70504789(+)$1	239	116	139	21.2872
AUGCGGCUUUUCUGCAUCAACUG	chr2:54896147-54896362(+)$1	215	132	155	22.2783
GUCCUAAUUACCAGUCUUUAAAG	chr11:64571444-64571695(-)$1	251	144	167	20.1629
GACGUCACCAUUUUUAACUGACA	chr2:223806335-223806580(+)$1	245	157	180	20.2118
CUGCAGUUACAUACAGAAUUGCU	chr3:12939511-12939774(-)$1	263	228	251	23.0245
AGUGGUCAAAAUACAUUUCUGGG	chr12:104743544-104743803(+)$1	259	44	67	22.3548
CCCCCAGAAGGGUCAAUGUUGGG	chr12:50157769-50158030(+)$1	261	232	255	21.1958
cgaguuucaccacguuaccuagg	chr2:188329984-188330209(-)$1	225	149	172	22.5899
UUUUCAAUUUACAGUCGAUUUUG	chr8:141525380-141525769(+)$1	389	281	304	20.3384
CCUAAAGAAUCCCACCCCCACUU	chr16:67470928-67471213(+)$1	285	87	110	22.8860
UAGAUCACACAUAACAAUAGGGU	chr8:22878966-22879235(-)$1	269	160	183	21.3994
UCCAAAUUCUUUAUUCUUCCUUG	chr20:17588175-17588533(+)$1	358	2	25	17.4673
GCAGCCACCUCCUCUCCCUGGCU	chr19:2071575-2071815(-)$1	240	192	215	19.6018
UGCAGAGCCUUGCCUUUCCCCUC	chr14:65406000-65406313(-)$1	313	229	252	21.3136
GCAGCAGCCACACUCACACCCUG	chr18:33571239-33571509(-)$1	270	119	142	22.9420
AUGUUUCUUAAACUUUCCGCGAA	chr1:230415236-230415482(+)$1	246	39	62	23.2901
CUGGGCCUCCUCCUCCAAAUGCC	chr4:119736602-119736896(-)$1	294	207	230	21.3994
GGCAGUGAGACCAGCCCACCCAC	chr10:81072980-81073215(+)$1	235	32	55	22.7461
AGUGCUUGAAGCAAAAUAAAAAC	chr16:74497152-74497367(-)$1	215	27	50	20.3946
UUUCCAUUUCUAUACUUUAUGGG	chr5:78074201-78074535(-)$1	334	241	264	19.3616
UCUAAGAUAAAAGCUCAACUUCU	chr7:6063613-6063852(-)$1	239	29	52	21.7480
UUGCUGCAUUUUCUUCACUUGCA	chr15:58889211-58889474(-)$1	263	24	47	20.4403
UCAGUCUCUGCCAUCUUCCAUGA	chr20:30783369-30783621(-)$1	252	199	222	17.2014
UGGUUGCUGAGACUCCAUUUUGC	chr7:94296583-94296806(+)$1	223	0	23	20.6639
UCGGUGAcuucccccuccccuuc	chr14:65569026-65569313(-)$1	287	180	203	22.5234
cucaucugaauaccaagcacaga	chr22:21141669-21141899(+)$1	230	52	75	20.4403
ACCUGUACCUUUCCUGCUUUUCA	chr3:52028034-52028242(-)$1	208	76	99	20.1173
CACUUGAUGCCGUUUCUUUCAAU	chr19:3976284-3976525(-)$1	241	129	152	20.9828
CAUGACGACCGCGUCCACCUCGC	chr11:61734788-61735067(-)$1	279	169	192	19.9180
UCGUGGGGAUCAUCACUUACCCA	chr17:42397030-42397264(-)$1	234	92	115	21.9273
CAAGCUGUUAACCGAAGAUCAGC	chr5:179393710-179393973(-)$1	263	20	43	19.9292
CAGUACCUCACCCCCAACCCAGU	chr17:37566033-37566312(-)$1	279	102	125	17.2014
CAUAUAUUGUCUGUCCAUAUGUA	chr12:46752327-46752588(-)$1	261	70	93	22.9576
CCUGUAUACUUUUUUUUGCUUUA	chr14:21702188-21702483(-)$1	295	69	92	17.2014
GUGGGAGAGACCCGAGCAUCCUC	chr13:30087218-30087458(-)$1	240	107	130	19.8542
UGGGGCUGGCACCAGAUGAUGUC	chr1:236139951-236140255(-)$1	304	36	59	21.3994
GUCAGACUUCUACAACCUCCUCU	chr16:69726972-69727226(+)$1	254	114	137	22.0967
CAAGAAUUCUCCAAAACAAUUUU	chr21:27253103-27253365(-)$1	262	144	167	17.4411
UUGAAAUUCUGCCACCUUGUUUC	chr12:102315485-102315780(+)$1	295	187	210	21.2979
CAGAAGAAAAUUUGCUUAGAUUU	chr8:38959304-38959550(+)$1	246	147	170	22.5899
AUCAUGAGCAUCAUCACAAUCAU	chr5:42801165-42801397(-)$1	232	46	69	21.4626
ACAUAAUCUUCUACAUGUAUGAU	chr1:93618094-93618338(-)$1	244	154	177	21.1200
ucccucuguaUACAAGGAUCAGA	chr14:95059000-95059233(+)$1	233	123	146	20.0305
CACUUUAUUAUCCCUAUUUUUAA	chr2:46611810-46612062(+)$1	252	158	181	22.0625
UUGUCUUUCUCCAAUAAUUAAGG	chr13:95057441-95057738(+)$1	297	213	236	20.6809
CAUGGCACCCAUUAGAAAUGCCU	chr7:92235557-92235827(-)$1	270	207	230	20.9828
UUUACCCACUGGAUCAAAGGGUA	chr13:98043918-98044173(+)$1	255	146	169	19.5457
GACCUAAUAUGUUUUCUUCCUUA	chr3:169866823-169867124(-)$1	301	68	91	23.1604

#DB
(.(((................))	chr10:81072628-81072890(+)$1	1	90	113	20.1865
(((.((((............)))	chr10:114910656-114910974(+)$1	1	209	232	21.6866
...((((...........)))).	chr19:3976337-3976567(-)$1	1	171	194	20.9828
(((((((..............))	chr17:48459396-48459642(-)$1	1	64	87	21.7822
(((((.((............)).	chr16:74486460-74486710(-)$1	1	146	169	20.8189
(((((((.............)))	chr17:53400299-53400525(+)$1	1	94	117	22.4443
...((((.............)))	chr7:94295038-94295290(+)$1	1	214	237	21.5938
((((((..............)))	chrX:100646407-100646653(+)$1	1	209	232	21.3994
(.(((((.............)))	chr1:214210899-214211158(+)$1	1	195	218	23.3981
(((((((...........)))))	chr1:167759280-167759578(+)$1	1	9	32	20.9170
(..(((...............))	chr1:92149008-92149236(-)$1	1	77	100	17.6345
..(((((............))))	chr2:70504550-70504789(+)$1	1	116	139	21.2872
((((((..............)))	chr2:54896147-54896362(+)$1	1	132	155	22.2783
(.(((................))	chr11:64571444-64571695(-)$1	1	144	167	20.1629
...((((...........)))).	chr2:223806335-223806580(+)$1	1	157	180	20.2118
(((((((.............)))	chr3:12939511-12939774(-)$1	1	228	251	23.0245
(((((((..............))	chr12:104743544-104743803(+)$1	1	44	67	22.3548
(.(((((...........)))))	chr12:50157769-50158030(+)$1	1	232	255	21.1958
(((((((.............)))	chr2:188329984-188330209(-)$1	1	149	172	22.5899
(((((((.............)))	chr8:141525380-141525769(+)$1	1	281	304	20.3384
(...(((.............)))	chr16:67470928-67471213(+)$1	1	87	110	22.8860
((((((..............)))	chr8:22878966-22879235(-)$1	1	160	183	21.3994
(.(((...............)))	chr20:17588175-17588533(+)$1	1	2	25	17.4673
)((((((...........)))))	chr19:2071575-2071815(-)$1	1	192	215	19.6018
.((((((.............)))	chr14:65406000-65406313(-)$1	1	229	252	21.3136
.(..(((.............)))	chr18:33571239-33571509(-)$1	1	119	142	22.9420
))(((((.............)))	chr1:230415236-230415482(+)$1	1	39	62	23.2901
((((((..............)))	chr4:119736602-119736896(-)$1	1	207	230	21.3994
((..(((.............)))	chr10:81072980-81073215(+)$1	1	32	55	22.7461
(.((.((............)).)	chr16:74497152-74497367(-)$1	1	27	50	20.3946
...((((...........)))))	chr5:78074201-78074535(-)$1	1	241	264	19.3616
..(((((.............)))	chr7:6063613-6063852(-)$1	1	29	52	21.7480
((((((((...........))))	chr15:58889211-58889474(-)$1	1	24	47	20.4403
.(((((...............))	chr20:30783369-30783621(-)$1	1	199	222	17.2014
((((.((..............))	chr7:94296583-94296806(+)$1	1	0	23	20.6639
))(((((..............))	chr14:65569026-65569313(-)$1	1	180	203	22.5234
((((((((...........))))	chr22:21141669-21141899(+)$1	1	52	75	20.4403
(((((................))	chr3:52028034-52028242(-)$1	1	76	99	20.1173
...((((...........)))).	chr19:3976284-3976525(-)$1	1	129	152	20.9828
(.((.(((...........))))	chr11:61734788-61735067(-)$1	1	169	192	19.9180
).(((((............))))	chr17:42397030-42397264(-)$1	1	92	115	21.9273
(..((((............))))	chr5:179393710-179393973(-)$1	1	20	43	19.9292
.(((((...............))	chr17:37566033-37566312(-)$1	1	102	125	17.2014
((.((((.............)))	chr12:46752327-46752588(-)$1	1	70	93	22.9576
.(((((...............))	chr14:21702188-21702483(-)$1	1	69	92	17.2014
(((((.(((...........)))	chr13:30087218-30087458(-)$1	1	107	130	19.8542
((((((..............)))	chr1:236139951-236140255(-)$1	1	36	59	21.3994
.(((((..............)))	chr16:69726972-69727226(+)$1	1	114	137	22.0967
))((((...............))	chr21:27253103-27253365(-)$1	1	144	167	17.4411
..(((((...........)))))	chr12:102315485-102315780(+)$1	1	187	210	21.2979
(((((((.............)))	chr8:38959304-38959550(+)$1	1	147	170	22.5899
(((((((............))))	chr5:42801165-42801397(-)$1	1	46	69	21.4626
)(((((((............)).	chr1:93618094-93618338(-)$1	1	154	177	21.1200
....((((...........))))	chr14:95059000-95059233(+)$1	1	123	146	20.0305
)((((((.............)))	chr2:46611810-46612062(+)$1	1	158	181	22.0625
((((((((...........))))	chr13:95057441-95057738(+)$1	1	213	236	20.6809
...((((...........)))).	chr7:92235557-92235827(-)$1	1	207	230	20.9828
..(((((...........)))))	chr13:98043918-98044173(+)$1	1	146	169	19.5457
((.((((.............)))	chr3:169866823-169867124(-)$1	1	68	91	23.1604

#PSSM
d : 0.15	c : 0.15	f : 0.11	: : 0.11	e : 0.10	g : 0.08	" : 0.06	$ : 0.03	= : 0.03	i : 0.01	& : 0.01	h : 0.01	[ : 0.01	b : 0.01	' : 0.01	C : 0.01	% : 0.01	
f : 0.13	e : 0.13	[ : 0.11	d : 0.11	" : 0.08	g : 0.08	: : 0.08	c : 0.06	$ : 0.03	= : 0.03	i : 0.01	& : 0.01	! : 0.01	h : 0.01	a : 0.01	' : 0.01	
e : 0.28	f : 0.13	d : 0.10	c : 0.06	" : 0.06	g : 0.06	! : 0.05	$ : 0.03	= : 0.03	b : 0.03	[ : 0.03	i : 0.01	& : 0.01	h : 0.01	' : 0.01	: : 0.01	
e : 0.28	d : 0.25	f : 0.13	c : 0.06	g : 0.06	= : 0.03	! : 0.03	b : 0.03	[ : 0.01	i : 0.01	h : 0.01	" : 0.01	$ : 0.01	
d : 0.28	e : 0.28	f : 0.13	c : 0.11	g : 0.05	[ : 0.05	= : 0.03	i : 0.01	h : 0.01	
d : 0.28	e : 0.27	f : 0.13	c : 0.08	y : 0.05	g : 0.03	[ : 0.03	= : 0.03	b : 0.03	h : 0.01	x : 0.01	
d : 0.25	e : 0.18	w : 0.10	x : 0.10	c : 0.08	b : 0.06	f : 0.06	y : 0.05	g : 0.03	= : 0.03	h : 0.01	
v : 0.27	t : 0.16	w : 0.16	x : 0.10	d : 0.08	u : 0.08	y : 0.05	b : 0.03	c : 0.03	
v : 0.27	t : 0.25	w : 0.16	u : 0.13	x : 0.10	y : 0.05	c : 0.01	
t : 0.27	v : 0.27	w : 0.16	u : 0.13	x : 0.10	y : 0.05	
t : 0.27	v : 0.27	w : 0.16	u : 0.13	x : 0.10	y : 0.05	
t : 0.27	v : 0.27	w : 0.16	u : 0.13	x : 0.10	y : 0.05	
t : 0.27	v : 0.27	w : 0.16	u : 0.13	x : 0.10	y : 0.05	
t : 0.27	v : 0.27	w : 0.16	u : 0.13	x : 0.10	y : 0.05	
t : 0.27	v : 0.27	w : 0.16	u : 0.13	x : 0.10	y : 0.05	
t : 0.27	v : 0.27	w : 0.16	u : 0.13	x : 0.10	y : 0.05	
t : 0.27	v : 0.27	w : 0.16	u : 0.13	x : 0.10	y : 0.05	
t : 0.27	v : 0.27	w : 0.16	u : 0.13	x : 0.10	y : 0.05	
v : 0.27	w : 0.16	u : 0.13	x : 0.10	t : 0.10	d : 0.08	e : 0.06	y : 0.05	f : 0.01	
v : 0.27	d : 0.16	w : 0.16	e : 0.10	x : 0.10	y : 0.05	u : 0.05	f : 0.03	b : 0.01	c : 0.01	t : 0.01	
d : 0.27	e : 0.16	f : 0.13	c : 0.10	x : 0.08	w : 0.06	y : 0.05	b : 0.05	= : 0.03	g : 0.01	h : 0.01	
d : 0.28	e : 0.25	c : 0.15	f : 0.13	g : 0.05	b : 0.05	= : 0.03	h : 0.01	] : 0.01	
e : 0.25	d : 0.22	c : 0.13	f : 0.13	3 : 0.05	g : 0.05	b : 0.05	] : 0.03	= : 0.03	2 : 0.01	h : 0.01	

#score	1236.0690088357699
#seq	59
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_CDS_m1_run1.txt

#BEAR
=======!!bb!!a[bbmmmmbba22bb333=====	chr20:60962821-60963030(+)$1	209	54	90	15.8865
=======!!bb!!a[bbmmmmbba22bb333=====	chr20:60962865-60963072(+)$1	207	10	46	15.8865
e[ccc####bb[eeeeemmmmeeeeebb4444ccc]	chr17:80197156-80197379(+)$1	223	55	91	13.8186
:ggggggg[dddd!!bbmmmmbb]dddd]ggggggg	chr2:176042803-176043139(-)$1	336	184	220	11.5611
e[ccc"""bb!!eeeeellleeeee]bb22ccc]ee	chr20:25206119-25206389(+)$1	270	172	208	12.4183
:a[ccc"""ccc[ddddmmmmdddd]ccc333ccca	chr11:60704134-60704380(+)$1	246	96	132	13.3309
:iiiiiiiiigggggggmmmmggggggg]iiiiiii	chr20:61919628-61919960(+)$1	332	25	61	12.9537
gg!!ccc!!a!!bba[ammmma]a]bb22a22ccc3	chr17:79826382-79826635(-)$1	253	75	111	13.7145
eeeee####ccc[bb[ammmma]bb]ccc333eeee	chr11:63742054-63742338(+)$1	284	172	208	13.3032
%ggggggg####ddddnnnnndddd333ggggggg3	chr19:11242073-11242319(+)$1	246	100	136	11.3660
"ggggggg####eeeeeooooooeeeee22gggggg	chr20:61598655-61598930(+)$1	275	71	107	13.3159
d!!dddd!!bb[eeeeeooooooeeeee22bb]ddd	chr3:9957082-9957418(+)$1	336	240	276	11.7911
deeeee"""ccc[ddddmmmmddddccc4444eeee	chr1:183522073-183522319(+)$1	246	109	145	13.3561
iiiii[ccc[a[a[bboooooobba]accciiiiii	chr1:228680741-228681000(+)$1	259	36	72	12.7470
hh[a[cccbb!!eeeeeooooooeeeee]bb22ccc	chr1:1374934-1375172(+)$1	238	40	76	10.9811
iiiiiiiii####ddddmmmmdddd4444iiiiiii	chr14:105185039-105185312(+)$1	273	35	71	14.0998
deeeee"""ccc[ddddmmmmddddccc4444eeee	chr1:183521966-183522233(+)$1	267	216	252	13.3561
ddd[ggggggg"""cccmmmmccc]ggggggg]ddd	chr6:33239754-33240001(+)$1	247	203	239	12.7785
d"""ccc!!bb[ddddnnnnndddd]bb22ccc333	chr21:45879939-45880214(+)$1	275	135	171	12.0317
####iiiiiiiii[bboooooobb]iiiiiiiii33	chr9:139958955-139959219(-)$1	264	155	191	12.7138
:cccccc!!bb[eeeeellleeeee]bb22ccc]cc	chrX:105277567-105277784(-)$1	217	138	174	11.5755
e[eeeeeccc!!bbddddllldddd]bb]ccc333e	chr1:11810169-11810438(+)$1	269	69	105	11.6768
ffffff"""eeeee[bbmmmmbb]eeeee]ffffff	chr7:149576355-149576653(+)$1	298	202	238	11.1242
gg!!ccc!!a!!bba[ammmma]a]bb22a22ccc3	chr17:79826501-79826765(-)$1	264	205	241	13.7145
d[aggggggg[ccc[bbmmmmbbcccggggggg]a]	chr17:79826152-79826430(-)$1	278	43	79	12.9765
dddd[ccc[a!!eeeeeooooooeeeee]a]cccdd	chr16:1496230-1496489(-)$1	259	10	46	12.2135
b[eeeee!!bb[eeeeeooooooeeeee]bbeeeee	chr17:1657707-1657931(+)$1	224	98	134	11.8320
""ffffff!!eeeee[ammmma]eeeee22ffffff	chr1:156219621-156219878(-)$1	257	108	144	11.8355
!ffffff!!bb[eeeeemmmmeeeee]bb22fffff	chr12:120534321-120534639(-)$1	318	16	52	11.8930
ggggddddbb"""ddddmmmmdddd]bb]dddd]gg	chr11:61116950-61117272(-)$1	322	46	82	11.8467
[bb!!==========bbmmmmbb333==========	chr1:6694536-6694780(-)$1	244	194	230	14.3878
ggggg[dddd!!bb[bbmmmmbbbb]dddd]ggggg	chr21:46935582-46935813(-)$1	231	158	194	11.5929
d[aggggggg[ccc[bbmmmmbbcccggggggg]a]	chr17:79826298-79826577(-)$1	279	190	226	12.9765
Fffffff!!bb[eeeeemmmmeeeee]bb22fffff	chr12:120534492-120534857(-)$1	365	234	270	11.3650
[dddd"""ccc[bb[bbmmmmbb]bb]ccc333ddd	chr16:66965918-66966212(-)$1	294	49	85	12.0128
""ddddcccbb!!ddddmmmmdddd333bb]ccc]d	chr19:3543814-3544099(-)$1	285	37	73	12.0240
c[eeeeeaccc[ddddooooooddddccc]a]eeee	chr19:47341401-47341808(-)$1	407	298	334	11.8656
:eeeee[==========lll==========eeeeeg	chr1:9324008-9324256(+)$1	248	64	100	11.9366
!!dddd!!gggggggccclllccc]ggggggg]ddd	chr1:1374801-1375104(+)$1	303	81	117	11.6437
ccc!!ggggggg!!cccmmmmccc]gggggggccc]	chr19:1474705-1474955(-)$1	250	182	218	13.2644
ddggggggg[dddd[aooooooadddd22ggggggg	chr19:3543272-3543524(-)$1	252	146	182	11.6712
d[ccc"""ccceeeeeammmma]eeeee]ccc22cc	chr19:45853865-45854143(-)$1	278	83	119	13.0262
===!!dddd!!ggggggglllggggggg333dddd=	chr16:4562347-4562627(-)$1	280	216	252	11.5362
bb"""iiiiiiiii[annnnna]iiiiiiiiibbgg	chr14:105222869-105223170(+)$1	301	110	146	10.7960
:eeeee####ccc[aooooooa]ccc4444eeeeeh	chr17:74078585-74078869(-)$1	284	128	164	11.1575
ccc[a[a"""gggggggmmmmggggggg333aaccc	chr1:1430991-1431291(+)$1	300	245	281	14.1035
eeeee[a[ffffffcccmmmmccc]ffffff]a]ee	chr19:1461037-1461292(-)$1	255	117	153	11.0997
eeeee[ccc[bb[bboooooobb333bb]ccc]eee	chr21:45879744-45879976(+)$1	232	16	52	11.3569
eeeeebbccc[a[ddddmmmmddddaccc]bb333e	chr2:220085728-220085980(-)$1	252	131	167	11.4327
iii####ccc[a[ddddoooooodddd]accc22ii	chr1:45241167-45241372(+)$1	205	129	165	11.6605
cca[==========[ccclllccc22==========	chr8:144103098-144103347(+)$1	249	199	235	13.6475
:dddd[ccc[ccc[cccmmmmccc]ccc]ccc]ddd	chr1:1374972-1375267(+)$1	295	236	272	11.4614
c[ccc[eeeee[bb!!aooooooa22bbeeeeeccc	chr17:1657516-1657758(+)$1	242	154	190	10.7408
ggggg[dddd!!bb[bbmmmmbbbb]dddd]ggggg	chr21:46935378-46935679(-)$1	301	24	60	11.5929
!!eeeee[ggggggg[ammmma]ggggggg22eeee	chr17:46137199-46137512(+)$1	313	264	300	12.9684
===========[a[cccnnnnnccc22a]=======	chr17:73823525-73823822(-)$1	297	45	81	12.9933
:bb[=============nnnnn=============]	chr15:69747683-69747939(+)$1	256	64	100	11.9270
=======!!bb!!a[bbmmmmbba22bb333=====	chr20:60962837-60963046(+)$1	209	38	74	15.8865

#otherMatches

#Seq PSSM
UGUGACCCUUCUUCUCUUUCUAGGUUGACAAGGUCA	chr20:60962821-60963030(+)$1	209	54	90	15.8865
UGUGACCCUUCUUCUCUUUCUAGGUUGACAAGGUCA	chr20:60962865-60963072(+)$1	207	10	46	15.8865
GCAGGUGCUGCGUGGGGCCCUCUCCAGCCCGUCCUA	chr17:80197156-80197379(+)$1	223	55	91	13.8186
ACUGUGACUCCGAAAACUGUAGUAUUGGUGUCAUGG	chr2:176042803-176043139(-)$1	336	184	220	11.5611
UCCUGGACGUGACUUCAUCCUGAGGAGCCACAGCAC	chr20:25206119-25206389(+)$1	270	172	208	12.4183
AGUCACCUGAGGAGCCUGUAGGGGCCCCUGCUGUGC	chr11:60704134-60704380(+)$1	246	96	132	13.3309
UGCUCUAGUUCUUUCUUUUUGAAGAGAGUGACUGGA	chr20:61919628-61919960(+)$1	332	25	61	12.9537
GCCCAGCCUCCUCGGUCUCCUGUCUCGUUGCUGCUU	chr17:79826382-79826635(-)$1	253	75	111	13.7145
GAUCCAUUCGUUGCCGCCGGAGGGGAAGCUUGGGAU	chr11:63742054-63742338(+)$1	284	172	208	13.3032
GGUUUCUUCCUUUCCUCGUGAAGGAUAAGAGAAACA	chr19:11242073-11242319(+)$1	246	100	136	11.3660
ACCACGGGCUCCUGGACUUGCCUGUUCAACCUUGUG	chr20:61598655-61598930(+)$1	275	71	107	13.3159
CUACCGCCUGCUGCGCGACCUGCCGCGUCUGCUGCG	chr3:9957082-9957418(+)$1	336	240	276	11.7911
CGUAGCCCACAGAGGGCCCAGGCCCCUGCCCAGCUG	chr1:183522073-183522319(+)$1	246	109	145	13.3561
AAGGCACUGACCGACUACAAGAAGCUGCGGGCCUUC	chr1:228680741-228681000(+)$1	259	36	72	12.7470
CGCGGGCCGCAACUGCACCACGCUGCAGGGCCUGGC	chr1:1374934-1375172(+)$1	238	40	76	10.9811
UGAUAUUGUACCCAGCAAAACUGCUCCUAAUAAUGU	chr14:105185039-105185312(+)$1	273	35	71	14.0998
CGUAGCCCACAGAGGGCCCAGGCCCCUGCCCAGCUG	chr1:183521966-183522233(+)$1	267	216	252	13.3561
GCUGUCAGGGUUCUGGAAACGUCCUGCCCUGAGGGC	chr6:33239754-33240001(+)$1	247	203	239	12.7785
cucucccAUCUUGUGACCUCUUUACUGGCGGGGCCU	chr21:45879939-45880214(+)$1	275	135	171	12.0317
CUUCGAGGGUGGGCGCCCCAUCGCACCCACCCUCUC	chr9:139958955-139959219(-)$1	264	155	191	12.7138
GCAGCUGUCCCUGAAGUUGAACUUUCGGAUCAGCCU	chrX:105277567-105277784(-)$1	217	138	174	11.5755
GAGGGUACUGAAGCCAGCCACGCUGCGCCCGGCCCU	chr1:11810169-11810438(+)$1	269	69	105	11.6768
CUGGUUCCUGGAAGUCUUCCCAGUCUUCCCAGCCAG	chr7:149576355-149576653(+)$1	298	202	238	11.1242
GCCCAGCCUCCUCGGUCUCCUGUCUCGUUGCUGCUU	chr17:79826501-79826765(-)$1	264	205	241	13.7145
UGCCCCUGGACGUGUGCGUCUGCUGCUCCGGGGUGG	chr17:79826152-79826430(-)$1	278	43	79	12.9765
ACUGACCCUCUCGCGGGACUGACCCUGUUGUGGGCA	chr16:1496230-1496489(-)$1	259	10	46	12.2135
CCCAGUUUGGCAGCCCCAAGUGAGGGGCCGUGGCUG	chr17:1657707-1657931(+)$1	224	98	134	11.8320
UCGUGUGCUCCUCCUCCUGCUGCAGGGGCUGCACAU	chr1:156219621-156219878(-)$1	257	108	144	11.8355
CGGCACGUUCUAGCUGCGUCUGCGGCCAGCCCGUGC	chr12:120534321-120534639(-)$1	318	16	52	11.8930
GUGGCGGCCCACGCAGCUUCUGCUGAGGAGCUGACC	chr11:61116950-61117272(-)$1	322	46	82	11.8467
AGACAGCUGGCGCGGGGGGCCCCAAGCUGCGCCGGC	chr1:6694536-6694780(-)$1	244	194	230	14.3878
CAGCUGGCUGUCCAUCCUCCUGGUGUCAGCAAGCUG	chr21:46935582-46935813(-)$1	231	158	194	11.5929
UGCCCCUGGACGUGUGCGUCUGCUGCUCCGGGGUGG	chr17:79826298-79826577(-)$1	279	190	226	12.9765
CGGCACGUUCUAGCUGCGUCUGCGGCCAGCCCGUGC	chr12:120534492-120534857(-)$1	365	234	270	11.3650
CCUGGAGAACACCCACCUCUUGGAGGUUGUGAAUCA	chr16:66965918-66966212(-)$1	294	49	85	12.0128
UAGUGCCCCCUCAUCUGGGUGCAGAGACAGUGGGUG	chr19:3543814-3544099(-)$1	285	37	73	12.0240
GUGUGUCCCGAGUAACCGUGCCGUUGUCGUGUGAUG	chr19:47341401-47341808(-)$1	407	298	334	11.8656
UGGCCGUCUGUUGGACUUUGAGUUCAGUAGCGGCCG	chr1:9324008-9324256(+)$1	248	64	100	11.9366
UGGGCCCCAGCGCUGGGCUCAGCCGCGGCGCUCGGC	chr1:1374801-1375104(+)$1	303	81	117	11.6437
GCUGUACUGUGAUUCUGUCGUCAGCUCACAGUGGCC	chr19:1474705-1474955(-)$1	250	182	218	13.2644
ACCAGGCUUCCCAGGCGUCCGAGUUGGUCAGGCCUG	chr19:3543272-3543524(-)$1	252	146	182	11.6712
UGGGCUGUGGAUUCUGCUGAUGUCAGGGCUCUUUGC	chr19:45853865-45854143(-)$1	278	83	119	13.0262
UCUUCUGGCAAAAAUUCUGUUGGGAUUUAAGGCCAA	chr16:4562347-4562627(-)$1	280	216	252	11.5362
UGCGAGCCGUGGAUGGGAAGGCGGUCUGCGGUCAGU	chr14:105222869-105223170(+)$1	301	110	146	10.7960
UGCCCCUUUACAGUCUAGGCCGCCUGCCAUGGGGUG	chr17:74078585-74078869(-)$1	284	128	164	11.1575
GAGACACUCUUGGGAGAUGCAUUUUCCGUCUGGCUC	chr1:1430991-1431291(+)$1	300	245	281	14.1035
CCUGCCGCCCACCGGGUGCCCACCUUGGUGGCCCGC	chr19:1461037-1461292(-)$1	255	117	153	11.0997
GGGGAGAGGACCAGGAGGACACCGGAGGCCCUGUCC	chr21:45879744-45879976(+)$1	232	16	52	11.3569
CCACUGCCCUGCAUGGGGGCUUCCAGAGGCGCUACG	chr2:220085728-220085980(-)$1	252	131	167	11.4327
GGGUGAAGGGAGGUUGAGCUCAAUCAGGCCCCAUCC	chr1:45241167-45241372(+)$1	205	129	165	11.6605
ACGUGCCUGAUCUGUGCCCUUGGUCCCAGGUCAGGC	chr8:144103098-144103347(+)$1	249	199	235	13.6475
AGGGCCCCUGUGUCCCGAACCCGGAGCGGAGGCGCC	chr1:1374972-1375267(+)$1	295	236	272	11.4614
CACCGCGGGAGCUCAAGGAACAGCAGGAUUCCCCGG	chr17:1657516-1657758(+)$1	242	154	190	10.7408
CAGCUGGCUGUCCAUCCUCCUGGUGUCAGCAAGCUG	chr21:46935378-46935679(-)$1	301	24	60	11.5929
UGGCCAGGAUUCCAGGCAGCAGGUUGGAGUGACUGG	chr17:46137199-46137512(+)$1	313	264	300	12.9684
CCCUGCCCGCCUCUCAGAAAAGCUGCUGUGGUGGGC	chr17:73823525-73823822(-)$1	297	45	81	12.9933
AUUGACUUUUUUUUUCUAGCUGAGGAGAAGAAAGUG	chr15:69747683-69747939(+)$1	256	64	100	11.9270
UGUGACCCUUCUUCUCUUUCUAGGUUGACAAGGUCA	chr20:60962837-60963046(+)$1	209	38	74	15.8865

#DB
(((((((..((..(.((....)))..))...)))))	chr20:60962821-60963030(+)$1	1	54	90	15.8865
(((((((..((..(.((....)))..))...)))))	chr20:60962865-60963072(+)$1	1	10	46	15.8865
(.(((....((.(((((....)))))))....))).	chr17:80197156-80197379(+)$1	1	55	91	13.8186
.(((((((.((((..((....)).)))).)))))))	chr2:176042803-176043139(-)$1	1	184	220	11.5611
(.(((...((..(((((...))))).))..))).))	chr20:25206119-25206389(+)$1	1	172	208	12.4183
.(.(((...(((.((((....)))).)))...))))	chr11:60704134-60704380(+)$1	1	96	132	13.3309
.((((((((((((((((....))))))).)))))))	chr20:61919628-61919960(+)$1	1	25	61	12.9537
((..(((..(..(((.(....).).))..)..))).	chr17:79826382-79826635(-)$1	1	75	111	13.7145
(((((....(((.((.(....).)).)))...))))	chr11:63742054-63742338(+)$1	1	172	208	13.3032
.(((((((....((((.....))))...))))))).	chr19:11242073-11242319(+)$1	1	100	136	11.3660
.(((((((....(((((......)))))..))))))	chr20:61598655-61598930(+)$1	1	71	107	13.3159
(..((((..((.(((((......)))))..)).)))	chr3:9957082-9957418(+)$1	1	240	276	11.7911
)(((((...(((.((((....)))))))....))))	chr1:183522073-183522319(+)$1	1	109	145	13.3561
(((((.(((.(.(.((......))).))))))))))	chr1:228680741-228681000(+)$1	1	36	72	12.7470
((.(.(((((..(((((......))))).))..)))	chr1:1374934-1375172(+)$1	1	40	76	10.9811
(((((((((....((((....))))....)))))))	chr14:105185039-105185312(+)$1	1	35	71	14.0998
)(((((...(((.((((....)))))))....))))	chr1:183521966-183522233(+)$1	1	216	252	13.3561
(((.(((((((...(((....))).))))))).)))	chr6:33239754-33240001(+)$1	1	203	239	12.7785
(...(((..((.((((.....)))).))..)))...	chr21:45879939-45880214(+)$1	1	135	171	12.0317
....(((((((((.((......)).)))))))))..	chr9:139958955-139959219(-)$1	1	155	191	12.7138
.((((((..((.(((((...))))).))..))).))	chrX:105277567-105277784(-)$1	1	138	174	11.5755
(.((((((((..((((((...)))).)).)))...)	chr1:11810169-11810438(+)$1	1	69	105	11.6768
((((((...(((((.((....)).))))).))))))	chr7:149576355-149576653(+)$1	1	202	238	11.1242
((..(((..(..(((.(....).).))..)..))).	chr17:79826501-79826765(-)$1	1	205	241	13.7145
(.((((((((.(((.((....)))))))))))).).	chr17:79826152-79826430(-)$1	1	43	79	12.9765
((((.(((.(..(((((......))))).).)))))	chr16:1496230-1496489(-)$1	1	10	46	12.2135
(.(((((..((.(((((......))))).)))))))	chr17:1657707-1657931(+)$1	1	98	134	11.8320
..((((((..(((((.(....).)))))..))))))	chr1:156219621-156219878(-)$1	1	108	144	11.8355
.((((((..((.(((((....))))).))..)))))	chr12:120534321-120534639(-)$1	1	16	52	11.8930
((((((((((...((((....)))).)).)))).))	chr11:61116950-61117272(-)$1	1	46	82	11.8467
.((..((((((((((((....))...))))))))))	chr1:6694536-6694780(-)$1	1	194	230	14.3878
(((((.((((..((.((....)))).)))).)))))	chr21:46935582-46935813(-)$1	1	158	194	11.5929
(.((((((((.(((.((....)))))))))))).).	chr17:79826298-79826577(-)$1	1	190	226	12.9765
(((((((..((.(((((....))))).))..)))))	chr12:120534492-120534857(-)$1	1	234	270	11.3650
.((((...(((.((.((....)).)).)))...)))	chr16:66965918-66966212(-)$1	1	49	85	12.0128
..(((((((((..((((....))))...)).))).)	chr19:3543814-3544099(-)$1	1	37	73	12.0240
(.(((((((((.((((......))))))).).))))	chr19:47341401-47341808(-)$1	1	298	334	11.8656
.(((((.((((((((((...)))))))))))))))(	chr1:9324008-9324256(+)$1	1	64	100	11.9366
..((((..((((((((((...))).))))))).)))	chr1:1374801-1375104(+)$1	1	81	117	11.6437
(((..(((((((..(((....))).)))))))))).	chr19:1474705-1474955(-)$1	1	182	218	13.2644
(((((((((.((((.(......)))))..)))))))	chr19:3543272-3543524(-)$1	1	146	182	11.6712
(.(((...(((((((((....).))))).)))..))	chr19:45853865-45854143(-)$1	1	83	119	13.0262
(((..((((..(((((((...)))))))...)))))	chr16:4562347-4562627(-)$1	1	216	252	11.5362
((...(((((((((.(.....).)))))))))))))	chr14:105222869-105223170(+)$1	1	110	146	10.7960
.(((((....(((.(......).)))....)))))(	chr17:74078585-74078869(-)$1	1	128	164	11.1575
(((.(.(...(((((((....)))))))...)))))	chr1:1430991-1431291(+)$1	1	245	281	14.1035
(((((.(.(((((((((....))).)))))).).))	chr19:1461037-1461292(-)$1	1	117	153	11.0997
(((((.(((.((.((......))...)).))).)))	chr21:45879744-45879976(+)$1	1	16	52	11.3569
((((((((((.(.((((....)))))))).))...)	chr2:220085728-220085980(-)$1	1	131	167	11.4327
(((....(((.(.((((......)))).))))..))	chr1:45241167-45241372(+)$1	1	129	165	11.6605
))(.((((((((((.(((...)))..))))))))))	chr8:144103098-144103347(+)$1	1	199	235	13.6475
.((((.(((.(((.(((....))).))).))).)))	chr1:1374972-1375267(+)$1	1	236	272	11.4614
(.(((.(((((.((..(......)..))))))))))	chr17:1657516-1657758(+)$1	1	154	190	10.7408
(((((.((((..((.((....)))).)))).)))))	chr21:46935378-46935679(-)$1	1	24	60	11.5929
..(((((.(((((((.(....).)))))))..))))	chr17:46137199-46137512(+)$1	1	264	300	12.9684
(((((((((((.(.(((.....)))..).)))))))	chr17:73823525-73823822(-)$1	1	45	81	12.9933
.((.(((((((((((((.....))))))))))))).	chr15:69747683-69747939(+)$1	1	64	100	11.9270
(((((((..((..(.((....)))..))...)))))	chr20:60962837-60963046(+)$1	1	38	74	15.8865

#PSSM
d : 0.17	: : 0.13	e : 0.12	= : 0.08	g : 0.08	c : 0.08	" : 0.05	i : 0.05	! : 0.05	b : 0.03	[ : 0.03	% : 0.01	h : 0.01	# : 0.01	f : 0.01	F : 0.01	
[ : 0.15	g : 0.13	e : 0.13	= : 0.08	d : 0.08	i : 0.06	c : 0.06	! : 0.05	" : 0.05	f : 0.05	b : 0.05	a : 0.01	h : 0.01	# : 0.01	
e : 0.20	c : 0.12	g : 0.12	d : 0.10	= : 0.08	i : 0.06	f : 0.06	! : 0.05	a : 0.05	[ : 0.03	" : 0.03	b : 0.03	# : 0.01	
e : 0.20	g : 0.15	c : 0.10	d : 0.10	! : 0.08	= : 0.06	[ : 0.06	f : 0.06	i : 0.05	" : 0.03	# : 0.03	a : 0.01	
e : 0.20	c : 0.15	g : 0.15	= : 0.10	d : 0.10	i : 0.06	f : 0.06	! : 0.05	[ : 0.03	" : 0.01	a : 0.01	# : 0.01	
g : 0.13	e : 0.13	[ : 0.13	= : 0.12	c : 0.12	d : 0.08	i : 0.06	f : 0.06	# : 0.05	" : 0.05	b : 0.01	
c : 0.17	g : 0.13	= : 0.12	" : 0.12	d : 0.08	e : 0.08	# : 0.06	i : 0.06	f : 0.05	a : 0.03	[ : 0.01	! : 0.01	b : 0.01	
! : 0.20	c : 0.15	g : 0.13	" : 0.13	= : 0.08	i : 0.06	d : 0.06	# : 0.05	[ : 0.03	f : 0.01	a : 0.01	e : 0.01	
! : 0.20	c : 0.17	g : 0.12	# : 0.08	" : 0.08	= : 0.08	i : 0.06	b : 0.05	d : 0.05	[ : 0.03	f : 0.01	e : 0.01	
b : 0.24	c : 0.17	g : 0.10	= : 0.08	# : 0.06	[ : 0.06	d : 0.05	i : 0.05	a : 0.05	e : 0.03	! : 0.03	" : 0.01	f : 0.01	
b : 0.20	! : 0.15	c : 0.15	g : 0.10	= : 0.08	[ : 0.06	# : 0.05	e : 0.05	d : 0.03	i : 0.03	a : 0.01	" : 0.01	f : 0.01	
! : 0.20	[ : 0.20	c : 0.13	g : 0.10	= : 0.06	# : 0.05	e : 0.05	d : 0.03	" : 0.03	i : 0.03	a : 0.03	f : 0.01	b : 0.01	
e : 0.22	[ : 0.12	b : 0.12	! : 0.08	d : 0.08	g : 0.08	c : 0.06	= : 0.06	a : 0.03	" : 0.03	i : 0.03	# : 0.01	f : 0.01	
e : 0.22	d : 0.20	b : 0.15	g : 0.08	[ : 0.08	= : 0.06	a : 0.05	! : 0.03	c : 0.03	" : 0.01	i : 0.01	f : 0.01	
[ : 0.20	e : 0.20	d : 0.20	g : 0.08	c : 0.08	b : 0.06	a : 0.05	= : 0.05	! : 0.03	
b : 0.22	d : 0.20	e : 0.18	c : 0.12	[ : 0.08	g : 0.05	= : 0.03	a : 0.03	o : 0.03	! : 0.01	
b : 0.18	e : 0.17	d : 0.15	a : 0.12	c : 0.12	o : 0.10	g : 0.05	n : 0.05	= : 0.03	
m : 0.56	o : 0.22	n : 0.08	l : 0.05	c : 0.03	d : 0.01	g : 0.01	
m : 0.56	o : 0.22	l : 0.12	n : 0.08	
m : 0.56	o : 0.22	l : 0.12	n : 0.08	
m : 0.56	o : 0.22	n : 0.08	l : 0.06	e : 0.03	= : 0.01	
b : 0.20	o : 0.18	d : 0.17	a : 0.13	c : 0.10	e : 0.08	g : 0.05	n : 0.03	= : 0.01	
b : 0.24	d : 0.18	] : 0.13	o : 0.12	c : 0.12	e : 0.08	g : 0.05	= : 0.03	a : 0.01	
d : 0.22	e : 0.20	c : 0.17	a : 0.10	b : 0.08	g : 0.06	] : 0.05	3 : 0.03	= : 0.03	i : 0.01	
d : 0.24	e : 0.22	] : 0.13	2 : 0.08	g : 0.06	b : 0.06	c : 0.06	3 : 0.03	= : 0.03	a : 0.01	i : 0.01	
e : 0.18	] : 0.17	g : 0.12	2 : 0.10	c : 0.10	d : 0.06	3 : 0.06	b : 0.05	i : 0.03	= : 0.03	4 : 0.01	f : 0.01	a : 0.01	
b : 0.22	g : 0.15	e : 0.13	c : 0.12	d : 0.08	= : 0.06	] : 0.05	3 : 0.03	4 : 0.03	i : 0.03	a : 0.01	f : 0.01	2 : 0.01	
b : 0.22	c : 0.15	g : 0.15	e : 0.13	= : 0.06	d : 0.05	2 : 0.05	3 : 0.03	4 : 0.03	i : 0.03	f : 0.01	] : 0.01	a : 0.01	
] : 0.18	2 : 0.15	g : 0.12	c : 0.10	3 : 0.08	4 : 0.08	= : 0.06	b : 0.05	i : 0.03	e : 0.03	d : 0.03	f : 0.01	a : 0.01	
g : 0.15	2 : 0.13	3 : 0.12	c : 0.12	= : 0.08	4 : 0.06	i : 0.06	a : 0.05	b : 0.05	] : 0.05	d : 0.05	f : 0.01	e : 0.01	
g : 0.15	3 : 0.13	c : 0.13	i : 0.08	2 : 0.08	b : 0.06	] : 0.06	= : 0.06	4 : 0.05	f : 0.05	e : 0.05	d : 0.01	a : 0.01	
g : 0.18	c : 0.17	= : 0.12	i : 0.08	2 : 0.06	f : 0.06	e : 0.06	4 : 0.05	3 : 0.05	b : 0.03	d : 0.03	] : 0.03	a : 0.01	
c : 0.17	e : 0.15	g : 0.13	= : 0.12	] : 0.08	i : 0.06	f : 0.06	2 : 0.05	3 : 0.05	d : 0.03	a : 0.03	b : 0.01	
c : 0.17	e : 0.15	= : 0.12	g : 0.10	] : 0.10	d : 0.10	i : 0.06	f : 0.06	3 : 0.05	2 : 0.03	b : 0.01	
e : 0.18	c : 0.17	g : 0.13	= : 0.12	d : 0.12	i : 0.06	3 : 0.06	f : 0.06	a : 0.03	] : 0.01	
e : 0.18	g : 0.13	= : 0.12	d : 0.12	] : 0.08	3 : 0.08	c : 0.08	i : 0.06	f : 0.06	a : 0.01	h : 0.01	

#score	724.229024693617
#seq	58
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_transcript_m2_run1.txt

#BEAR
ee[bbnnnnnbb]eeee	chr19:956361-956621(+)$1	260	55	72	10.3534
eeeeennnnneeeeecc	chr1:2327059-2327308(+)$1	249	171	188	10.6669
%%cccnnnnncccdddd	chr20:57566747-57567024(+)$1	277	110	127	9.1614
"""bbnnnnnbb4444e	chr2:203964167-203964470(+)$1	303	243	260	10.1773
fffffnnnnnffffff]	chr2:27659745-27659997(+)$1	252	7	24	9.6126
""cccnnnnnccc4444	chr8:134269045-134269280(-)$1	235	161	178	11.0927
#bbbbnnnnnbb]bb44	chr12:121783759-121784010(-)$1	251	182	199	9.0492
""cccnnnnnccc333d	chr20:34218871-34219128(-)$1	257	115	132	11.1372
eeeeennnnneeeee55	chr3:185797833-185798085(-)$1	252	113	130	9.3690
gggggnnnnnggggggg	chr3:184100631-184100872(+)$1	241	208	225	10.2314
e[cccnnnnnccc333e	chr11:118888179-118888422(-)$1	243	187	204	11.3704
eecccnnnnnccc]eee	chr19:42756607-42756877(-)$1	270	44	61	11.0794
ddd[annnnna]dddd2	chr12:110028391-110028658(+)$1	267	224	241	9.8427
cc[bbnnnnnbbcccff	chr22:38209297-38209542(+)$1	245	38	55	9.8149
c[cccnnnnnccc]ccc	chr2:242611425-242611694(+)$1	269	178	195	10.8401
gggggnnnnnggggggg	chr16:81522806-81523051(+)$1	245	134	151	10.2314
bb[bbnnnnnbb]bb]c	chr11:70199953-70200162(-)$1	209	142	159	8.9834
Eddddnnnnnddddccc	chr16:28847426-28847662(+)$1	236	14	31	9.2163
a[cccnnnnnccca]ff	chr2:238487064-238487305(-)$1	241	99	116	10.6856
eeeeennnnneeeee:F	chr17:79966586-79966812(+)$1	226	37	54	9.4416
b[cccnnnnnccc]bb2	chr2:21266352-21266613(-)$1	261	215	232	10.1210
f[a[annnnna]a]fff	chr16:67977022-67977275(-)$1	253	21	38	10.0128
eeeeennnnneeeee]c	chr13:113351084-113351347(+)$1	263	104	121	10.8225
eeeeennnnneeeee]f	chr7:158153633-158153891(-)$1	258	90	107	10.7826
dd[bbnnnnnbbdddd:	chr17:79970134-79970361(+)$1	227	83	100	8.9525
eee[annnnna]eeeee	chr16:67864503-67864812(-)$1	309	101	118	10.5291
eeeeennnnneeeeeFF	chr20:31606171-31606405(+)$1	234	0	17	9.8850
[bbbbnnnnnbb22bb2	chr12:53512727-53512978(+)$1	251	191	208	8.5422
gggggnnnnnggggggg	chr3:48563011-48563275(-)$1	264	123	140	10.2314
b[cccnnnnncccbb22	chr17:7123741-7124002(+)$1	261	104	121	9.9946
fffffnnnnnffffff4	chr6:64282729-64282980(+)$1	251	112	129	9.6314
eeeeennnnneeeee22	chr16:88723898-88724161(-)$1	263	241	258	10.7112
ff[bbnnnnnbbfffff	chr16:783961-784221(-)$1	260	242	259	9.5792
eeeeennnnneeeeeee	chr16:50606122-50606365(+)$1	243	24	41	10.7062
eeebbnnnnnbb]eeee	chr20:60906394-60906681(-)$1	287	126	143	10.3690
eeeeennnnneeeeedd	chr20:61910073-61910320(+)$1	247	106	123	10.5166
gggggnnnnnggggggg	chr1:16957546-16957802(-)$1	256	31	48	10.2314
Cddddnnnnnddddccc	chr19:939806-940082(+)$1	276	48	65	9.0520
"ddddnnnnndddd333	chr20:2640897-2641179(-)$1	282	199	216	10.7990
eeeeennnnneeeee22	chr17:16344355-16344613(+)$1	258	207	224	10.7112
!ddddnnnnndddd22d	chr2:21266413-21266674(-)$1	261	123	140	10.1539
!!cccnnnnnccc333b	chr19:6682166-6682413(-)$1	247	130	147	11.1208
e!!bbnnnnnbb333ee	chr8:8197063-8197364(-)$1	301	268	285	10.4024
[ddddnnnnndddd]a]	chr17:80190704-80190956(+)$1	252	119	136	10.4121
e[cccnnnnnccc]eee	chr11:65194812-65195048(+)$1	236	4	21	11.1336
eeeeennnnneeeee33	chr11:47237703-47237950(+)$1	247	210	227	11.1180
iiiiinnnnniiiiiii	chr8:123794343-123794626(+)$1	283	87	104	10.1402
eddddnnnnnddddeee	chr16:89805659-89805922(-)$1	263	106	123	10.4143
eeeeennnnneeeee]b	chr21:46836228-46836491(+)$1	263	182	199	10.5884
[ddddnnnnndddd]a]	chr17:79962953-79963191(+)$1	238	191	208	10.4121
fffffnnnnnffffff2	chr20:40074330-40074582(-)$1	252	162	179	9.5287
fffffnnnnnffffffe	chr6:31914968-31915196(+)$1	228	29	46	9.5560
##cccnnnnnccc]fff	chr20:44515676-44515971(-)$1	295	260	277	10.7002
!ddddnnnnndddd22b	chr6:32086573-32086826(-)$1	253	170	187	9.9834
eeeeennnnneeeee]b	chr17:80019146-80019398(-)$1	252	189	206	10.5884
d[cccnnnnnccc]ddd	chr17:2593182-2593453(-)$1	271	5	22	10.6013
[ddddnnnnnddddeee	chr17:38324284-38324526(+)$1	242	44	61	10.4259
ddcccnnnnnccc]ddd	chr1:19570125-19570389(-)$1	264	153	170	10.4731
cccbbnnnnnbb]ccc:	chr3:195425744-195425970(+)$1	226	179	196	9.0409
ddcccnnnnnccc22dd	chr16:50641915-50642166(+)$1	251	157	174	10.2154
Dddddnnnnnddddeee	chr11:47316856-47317121(+)$1	265	121	138	9.2522

#otherMatches

#Seq PSSM
UCGGUGAUGGACGGGGU	chr19:956361-956621(+)$1	260	55	72	10.3534
UGUCUGAAGGGGACAGU	chr1:2327059-2327308(+)$1	249	171	188	10.6669
AAGUGGCCGACACCAGA	chr20:57566747-57567024(+)$1	277	110	127	9.1614
AAUGAACAAAUCUCCAG	chr2:203964167-203964470(+)$1	303	243	260	10.1773
CCUUAUAACUUGAGGUA	chr2:27659745-27659997(+)$1	252	7	24	9.6126
UCUUGAAUUGCAGCUAA	chr8:134269045-134269280(-)$1	235	161	178	11.0927
UUCUGCGUCACAUGAUC	chr12:121783759-121784010(-)$1	251	182	199	9.0492
AGAGAACAGGUCUGGGG	chr20:34218871-34219128(-)$1	257	115	132	11.1372
CUAGCUUUCUGCUGGAC	chr3:185797833-185798085(-)$1	252	113	130	9.3690
GUCCAGGAGAUGGACUG	chr3:184100631-184100872(+)$1	241	208	225	10.2314
UCGGGACAAGCUCAAUA	chr11:118888179-118888422(-)$1	243	187	204	11.3704
CCGCCGUUGUGGUGGGC	chr19:42756607-42756877(-)$1	270	44	61	11.0794
CCUCGCAAUACCAGGGC	chr12:110028391-110028658(+)$1	267	224	241	9.8427
CACAGAACACCUUGCCU	chr22:38209297-38209542(+)$1	245	38	55	9.8149
AGAUUCUUCUGAUGUAG	chr2:242611425-242611694(+)$1	269	178	195	10.8401
uccccacagagggggac	chr16:81522806-81523051(+)$1	245	134	151	10.2314
GCACUAAUGAAGAGCCA	chr11:70199953-70200162(-)$1	209	142	159	8.9834
AAGGUGAGCAGCCUGGC	chr16:28847426-28847662(+)$1	236	14	31	9.2163
CAGGCGAGGGGCCGGUA	chr2:238487064-238487305(-)$1	241	99	116	10.6856
GGGGCCAUGUGCCCUGC	chr17:79966586-79966812(+)$1	226	37	54	9.4416
CCUGGUCUGUCCAAGUA	chr2:21266352-21266613(-)$1	261	215	232	10.1210
GGAGGGUAAGUGUGCUU	chr16:67977022-67977275(-)$1	253	21	38	10.0128
CCCUUGGAAUGGGGGAG	chr13:113351084-113351347(+)$1	263	104	121	10.8225
AUCCUGGGUGAGGGUGG	chr7:158153633-158153891(-)$1	258	90	107	10.7826
AGAGCGUGAGGCCUCGG	chr17:79970134-79970361(+)$1	227	83	100	8.9525
CUGGUGGGCGGGCAGCU	chr16:67864503-67864812(-)$1	309	101	118	10.5291
CCAGCCCAGAGCUGGGG	chr20:31606171-31606405(+)$1	234	0	17	9.8850
UGUGCUCUAUGCCUGCU	chr12:53512727-53512978(+)$1	251	191	208	8.5422
GCUCAUCUUCUGGGCCU	chr3:48563011-48563275(-)$1	264	123	140	10.2314
GCGGUAGGUAGCCCCGA	chr17:7123741-7124002(+)$1	261	104	121	9.9946
GUGGCGGUUGGCCGCCG	chr6:64282729-64282980(+)$1	251	112	129	9.6314
GGUGCACGUGGCAUCGG	chr16:88723898-88724161(-)$1	263	241	258	10.7112
CCUGGGCAGUCCGGGCC	chr16:783961-784221(-)$1	260	242	259	9.5792
ACAGCAAGGAGUUGUGG	chr16:50606122-50606365(+)$1	243	24	41	10.7062
AUGGGAGGAGCCGCAUA	chr20:60906394-60906681(-)$1	287	126	143	10.3690
AGGGCCCCACGCCCUCG	chr20:61910073-61910320(+)$1	247	106	123	10.5166
UCAGCGGCGAGCUGAGG	chr1:16957546-16957802(-)$1	256	31	48	10.2314
GCUGGAAUUGCCAGGGC	chr19:939806-940082(+)$1	276	48	65	9.0520
UGUGAGGAAGUUGCUGA	chr20:2640897-2641179(-)$1	282	199	216	10.7990
GCUGGAAUUACCGGCAG	chr17:16344355-16344613(+)$1	258	207	224	10.7112
AGGAGGGGGUCUCCGGA	chr2:21266413-21266674(-)$1	261	123	140	10.1539
ACCCCUCCUUGGGACCC	chr19:6682166-6682413(-)$1	247	130	147	11.1208
UCUGCAGAAAGCCUCAG	chr8:8197063-8197364(-)$1	301	268	285	10.4024
GGCCAGCCUGUGGCGUG	chr17:80190704-80190956(+)$1	252	119	136	10.4121
UGCCUGAGAAGGGGAGA	chr11:65194812-65195048(+)$1	236	4	21	11.1336
GCCUCUGGGUGGGGCUG	chr11:47237703-47237950(+)$1	247	210	227	11.1180
UUUUUUUUUUAAGAGUU	chr8:123794343-123794626(+)$1	283	87	104	10.1402
UCCCGCCAGAUGGGAAG	chr16:89805659-89805922(-)$1	263	106	123	10.4143
UAGGUGUUGAACCUGAG	chr21:46836228-46836491(+)$1	263	182	199	10.5884
GCCGCGUGAAGUGGGCA	chr17:79962953-79963191(+)$1	238	191	208	10.4121
UUCCUUCCCUAGGGAGC	chr20:40074330-40074582(-)$1	252	162	179	9.5287
CUGUCUCCCUGACGGCG	chr6:31914968-31915196(+)$1	228	29	46	9.5560
AACAGGCCCACUGAGCC	chr20:44515676-44515971(-)$1	295	260	277	10.7002
CUUUGUACCUUAGAACA	chr6:32086573-32086826(-)$1	253	170	187	9.9834
GCCCUGUUCGAGGGCCG	chr17:80019146-80019398(-)$1	252	189	206	10.5884
CUGCUGCUUUGGCUGCC	chr17:2593182-2593453(-)$1	271	5	22	10.6013
ACAAGUUCCUCUUGUGU	chr17:38324284-38324526(+)$1	242	44	61	10.4259
GGGAAAUGACUUCACCA	chr1:19570125-19570389(-)$1	264	153	170	10.4731
gggaguaauccuaccca	chr3:195425744-195425970(+)$1	226	179	196	9.0409
AUAGGAUCUGCCUCAGU	chr16:50641915-50642166(+)$1	251	157	174	10.2154
UACAGUAUUUCUGUGGG	chr11:47316856-47317121(+)$1	265	121	138	9.2522

#DB
((.((.....)).))))	chr19:956361-956621(+)$1	1	55	72	10.3534
(((((.....)))))))	chr1:2327059-2327308(+)$1	1	171	188	10.6669
..(((.....)))))))	chr20:57566747-57567024(+)$1	1	110	127	9.1614
...((.....))....)	chr2:203964167-203964470(+)$1	1	243	260	10.1773
(((((.....)))))).	chr2:27659745-27659997(+)$1	1	7	24	9.6126
..(((.....)))....	chr8:134269045-134269280(-)$1	1	161	178	11.0927
.((((.....)).))..	chr12:121783759-121784010(-)$1	1	182	199	9.0492
..(((.....)))...)	chr20:34218871-34219128(-)$1	1	115	132	11.1372
(((((.....)))))..	chr3:185797833-185798085(-)$1	1	113	130	9.3690
(((((.....)))))))	chr3:184100631-184100872(+)$1	1	208	225	10.2314
(.(((.....)))...)	chr11:118888179-118888422(-)$1	1	187	204	11.3704
(((((.....))).)))	chr19:42756607-42756877(-)$1	1	44	61	11.0794
(((.(.....).)))).	chr12:110028391-110028658(+)$1	1	224	241	9.8427
((.((.....)))))))	chr22:38209297-38209542(+)$1	1	38	55	9.8149
(.(((.....))).)))	chr2:242611425-242611694(+)$1	1	178	195	10.8401
(((((.....)))))))	chr16:81522806-81523051(+)$1	1	134	151	10.2314
((.((.....)).)).)	chr11:70199953-70200162(-)$1	1	142	159	8.9834
(((((.....))))(((	chr16:28847426-28847662(+)$1	1	14	31	9.2163
(.(((.....)))).))	chr2:238487064-238487305(-)$1	1	99	116	10.6856
(((((.....))))).(	chr17:79966586-79966812(+)$1	1	37	54	9.4416
(.(((.....))).)).	chr2:21266352-21266613(-)$1	1	215	232	10.1210
(.(.(.....).).)))	chr16:67977022-67977275(-)$1	1	21	38	10.0128
(((((.....))))).)	chr13:113351084-113351347(+)$1	1	104	121	10.8225
(((((.....))))).)	chr7:158153633-158153891(-)$1	1	90	107	10.7826
((.((.....)))))).	chr17:79970134-79970361(+)$1	1	83	100	8.9525
(((.(.....).)))))	chr16:67864503-67864812(-)$1	1	101	118	10.5291
(((((.....)))))((	chr20:31606171-31606405(+)$1	1	0	17	9.8850
.((((.....))..)).	chr12:53512727-53512978(+)$1	1	191	208	8.5422
(((((.....)))))))	chr3:48563011-48563275(-)$1	1	123	140	10.2314
(.(((.....)))))..	chr17:7123741-7124002(+)$1	1	104	121	9.9946
(((((.....)))))).	chr6:64282729-64282980(+)$1	1	112	129	9.6314
(((((.....)))))..	chr16:88723898-88724161(-)$1	1	241	258	10.7112
((.((.....)))))))	chr16:783961-784221(-)$1	1	242	259	9.5792
(((((.....)))))((	chr16:50606122-50606365(+)$1	1	24	41	10.7062
(((((.....)).))))	chr20:60906394-60906681(-)$1	1	126	143	10.3690
(((((.....)))))))	chr20:61910073-61910320(+)$1	1	106	123	10.5166
(((((.....)))))))	chr1:16957546-16957802(-)$1	1	31	48	10.2314
(((((.....))))(((	chr19:939806-940082(+)$1	1	48	65	9.0520
.((((.....))))...	chr20:2640897-2641179(-)$1	1	199	216	10.7990
(((((.....)))))..	chr17:16344355-16344613(+)$1	1	207	224	10.7112
.((((.....))))..)	chr2:21266413-21266674(-)$1	1	123	140	10.1539
..(((.....)))...)	chr19:6682166-6682413(-)$1	1	130	147	11.1208
(..((.....))...))	chr8:8197063-8197364(-)$1	1	268	285	10.4024
.((((.....)))).).	chr17:80190704-80190956(+)$1	1	119	136	10.4121
(.(((.....))).)))	chr11:65194812-65195048(+)$1	1	4	21	11.1336
(((((.....)))))..	chr11:47237703-47237950(+)$1	1	210	227	11.1180
(((((.....)))))))	chr8:123794343-123794626(+)$1	1	87	104	10.1402
)((((.....))))(((	chr16:89805659-89805922(-)$1	1	106	123	10.4143
(((((.....))))).)	chr21:46836228-46836491(+)$1	1	182	199	10.5884
.((((.....)))).).	chr17:79962953-79963191(+)$1	1	191	208	10.4121
(((((.....)))))).	chr20:40074330-40074582(-)$1	1	162	179	9.5287
(((((.....))))))(	chr6:31914968-31915196(+)$1	1	29	46	9.5560
..(((.....))).)))	chr20:44515676-44515971(-)$1	1	260	277	10.7002
.((((.....))))..)	chr6:32086573-32086826(-)$1	1	170	187	9.9834
(((((.....))))).)	chr17:80019146-80019398(-)$1	1	189	206	10.5884
(.(((.....))).)))	chr17:2593182-2593453(-)$1	1	5	22	10.6013
.((((.....)))))))	chr17:38324284-38324526(+)$1	1	44	61	10.4259
(((((.....))).)))	chr1:19570125-19570389(-)$1	1	153	170	10.4731
(((((.....)).))).	chr3:195425744-195425970(+)$1	1	179	196	9.0409
(((((.....)))..))	chr16:50641915-50642166(+)$1	1	157	174	10.2154
)((((.....))))(((	chr11:47316856-47317121(+)$1	1	121	138	9.2522

#PSSM
e : 0.34	f : 0.09	d : 0.08	" : 0.06	g : 0.06	[ : 0.06	c : 0.04	b : 0.04	! : 0.04	# : 0.03	% : 0.01	E : 0.01	a : 0.01	C : 0.01	i : 0.01	D : 0.01	
e : 0.27	d : 0.22	[ : 0.13	f : 0.08	g : 0.06	" : 0.04	b : 0.04	c : 0.03	! : 0.03	% : 0.01	i : 0.01	# : 0.01	
c : 0.26	e : 0.24	d : 0.18	[ : 0.08	f : 0.06	g : 0.06	b : 0.03	" : 0.01	a : 0.01	! : 0.01	i : 0.01	
c : 0.24	e : 0.21	b : 0.18	d : 0.16	f : 0.06	g : 0.06	[ : 0.04	i : 0.01	
c : 0.24	e : 0.21	b : 0.18	d : 0.16	f : 0.06	g : 0.06	a : 0.04	i : 0.01	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
c : 0.24	e : 0.21	b : 0.18	d : 0.16	f : 0.06	g : 0.06	a : 0.04	i : 0.01	
c : 0.24	e : 0.21	b : 0.18	d : 0.16	f : 0.06	g : 0.06	] : 0.04	i : 0.01	
c : 0.26	e : 0.22	d : 0.19	] : 0.08	f : 0.08	g : 0.06	4 : 0.01	a : 0.01	2 : 0.01	3 : 0.01	i : 0.01	
e : 0.26	d : 0.21	] : 0.13	f : 0.08	3 : 0.06	g : 0.06	b : 0.04	4 : 0.03	c : 0.03	2 : 0.03	a : 0.01	i : 0.01	
e : 0.34	f : 0.11	d : 0.08	b : 0.08	3 : 0.08	c : 0.08	g : 0.06	] : 0.04	2 : 0.04	4 : 0.03	i : 0.01	
e : 0.16	f : 0.14	d : 0.11	c : 0.08	3 : 0.08	] : 0.08	2 : 0.08	g : 0.06	4 : 0.04	b : 0.03	a : 0.03	5 : 0.01	: : 0.01	F : 0.01	i : 0.01	
e : 0.21	d : 0.11	2 : 0.11	c : 0.09	f : 0.09	g : 0.06	b : 0.06	] : 0.04	4 : 0.04	F : 0.03	: : 0.03	3 : 0.03	5 : 0.01	i : 0.01	

#score	620.8021685076167
#seq	61
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_CDS_m2_run1.txt

#BEAR
a!!eeeeepppppppeeeee22	chr2:219267615-219267924(+)$1	309	198	220	12.0714
eee[a[cccooooooccc]a]e	chr8:25315648-25315940(-)$1	292	18	40	6.5690
!ccc[cccqqqqqqqqccc]cc	chr6:128327053-128327395(-)$1	342	99	121	7.5499
hhhhhh[apppppppa]hhhhh	chr12:58217991-58218476(-)$1	485	423	445	11.6790
[ffffffrrrrrrrrrffffff	chr14:24901231-24901497(+)$1	266	26	48	10.2377
!gggggggpppppppggggggg	chr18:55990366-55990591(+)$1	225	100	122	14.0801
Fgggggggpppppppggggggg	chr7:150935657-150935886(+)$1	229	205	227	13.4764
=========oooooo=======	chr17:36760615-36760867(-)$1	252	196	218	7.7550
"a[cccrrrrrrrrrccc]a33	chr14:24901297-24901621(+)$1	324	119	141	10.8637
ffffffrrrrrrrrrffffff]	chr17:37899048-37899310(+)$1	262	44	66	9.9953
b[ffffffpppppppffffff]	chr14:103574564-103574856(+)$1	292	14	36	11.9495
ffff[cccpppppppccc]fff	chr19:991810-992093(+)$1	283	101	123	12.7414
gggggggqqqqqqqqggggggg	chr12:111168338-111168635(-)$1	297	227	249	8.7495
!gggggggpppppppggggggg	chr6:91254232-91254531(-)$1	299	266	288	14.0801
fff!!cccpppppppccc]fff	chr14:24566114-24566358(+)$1	244	111	133	12.8312
dddd!!bbrrrrrrrrrbb22d	chr16:24802021-24802339(+)$1	318	232	254	8.3142
iiiiiiiipppppppiiiiiii	chr13:111315268-111315519(-)$1	251	182	204	13.6716
eee!!cccpppppppccceeee	chr2:101437409-101437658(+)$1	249	19	41	12.5295
Egggggggpppppppggggggg	chr5:139493782-139494104(+)$1	322	261	283	12.8797
a!!eeeeepppppppeeeee22	chr2:219267724-219267949(+)$1	225	89	111	12.0714
========ppppppp=======	chr3:42661364-42661641(+)$1	277	126	148	13.8295
hhhhhhbbpppppppbb]hhhh	chr20:401383-401625(+)$1	242	213	235	11.2384
hhhhh[bbpppppppbb]hhhh	chr15:80215296-80215599(-)$1	303	251	273	11.4114
!gggggggpppppppggggggg	chr18:55990355-55990566(+)$1	211	111	133	14.0801
ggggg[cccooooooccc]ggg	chr1:68151570-68151884(+)$1	314	284	306	7.7322
!!bb[cccpppppppcccbb22	chr22:20073583-20073898(+)$1	315	117	139	11.9061
"""eeeeerrrrrrrrreeeee	chr22:20074077-20074344(+)$1	267	8	30	9.8154
:gggggggpppppppggggggg	chr6:167365916-167366141(-)$1	225	202	224	12.9299
:gggggggpppppppggggggg	chr7:100027475-100027783(+)$1	308	102	124	12.9299
""a[ddddpppppppdddd]a5	chr13:113760895-113761294(+)$1	399	135	157	10.5301
=====[bbpppppppbb]====	chr7:150935375-150935631(+)$1	256	178	200	12.9155
gggggggqqqqqqqqggggggg	chr9:139904664-139905000(-)$1	336	133	155	8.7495
[eeeeerrrrrrrrreeeee]d	chr14:24901494-24901759(+)$1	265	162	184	10.1287
gggggg[aqqqqqqqqa]gggg	chr6:5000732-5000990(-)$1	258	175	197	8.3653
gggggggqqqqqqqqggggggg	chr7:150066650-150066963(+)$1	313	117	139	8.7495
ffff[cccpppppppcccffff	chr12:62996868-62997164(+)$1	296	160	182	12.6147
ff[eeeeepppppppeeeee]f	chr7:150935307-150935575(+)$1	268	179	201	12.0826
gggggggqqqqqqqqggggggg	chr22:20073731-20074049(+)$1	318	223	245	8.7495
[ccc!!bbpppppppbb]cccd	chr7:100172779-100173061(-)$1	282	71	93	11.9721
==a[eeeeeooooooeeeee]a	chr2:220043013-220043409(+)$1	396	196	218	6.2586
eee[ddddpppppppdddd]ee	chr19:18392190-18392415(-)$1	225	14	36	11.0442

#otherMatches

#Seq PSSM
CUUUGAAUGUGUGCUGUUCACU	chr2:219267615-219267924(+)$1	309	198	220	12.0714
ACAGAGUGCGUGCGUGUGGUGU	chr8:25315648-25315940(-)$1	292	18	40	6.5690
UUAACGCACAUUUUUCUGCUUU	chr6:128327053-128327395(-)$1	342	99	121	7.5499
GGGAACUCUUUGAAUGUGUUCU	chr12:58217991-58218476(-)$1	485	423	445	11.6790
GUCCCAGGGAGAUGGAUUGGGG	chr14:24901231-24901497(+)$1	266	26	48	10.2377
UAAGUCUCGAGUUAAGGGAUUU	chr18:55990366-55990591(+)$1	225	100	122	14.0801
GUAUUUUUUAAAUAUGAAAAUG	chr7:150935657-150935886(+)$1	229	205	227	13.4764
UUGUGGGACAAGGAGGUCCUGC	chr17:36760615-36760867(-)$1	252	196	218	7.7550
GAGGGUUCUGUGUCCACCGUGA	chr14:24901297-24901621(+)$1	324	119	141	10.8637
AAAGGGAAUGAAUCACCCUUUG	chr17:37899048-37899310(+)$1	262	44	66	9.9953
UUUUGGGGGAGGCAGUCCCGGC	chr14:103574564-103574856(+)$1	292	14	36	11.9495
gccuggcugggauggggcgggg	chr19:991810-992093(+)$1	283	101	123	12.7414
CUGAGAAUUUUUUUCUUCUCAG	chr12:111168338-111168635(-)$1	297	227	249	8.7495
AUAGACCACCUGAGUUGGUCUA	chr6:91254232-91254531(-)$1	299	266	288	14.0801
CCCGCCUGUGCCAACCAGAGGG	chr14:24566114-24566358(+)$1	244	111	133	12.8312
GGGCAUGUAUAGAUAAGACUAG	chr16:24802021-24802339(+)$1	318	232	254	8.3142
ACAUGGAAUGUGAAUUUUCGUG	chr13:111315268-111315519(-)$1	251	182	204	13.6716
AGCCUGGCUCCUCACGUCGCUG	chr2:101437409-101437658(+)$1	249	19	41	12.5295
CGGGCGGCAACAAGAGCCGCCU	chr5:139493782-139494104(+)$1	322	261	283	12.8797
CUUUGAAUGUGUGCUGUUCACU	chr2:219267724-219267949(+)$1	225	89	111	12.0714
UAUUCUUUUGUUUAUAGAGAAU	chr3:42661364-42661641(+)$1	277	126	148	13.8295
CCGAGUGCCCCGUGUGCUACUC	chr20:401383-401625(+)$1	242	213	235	11.2384
CUGGCAGAGGGGAGGUCAGUUG	chr15:80215296-80215599(-)$1	303	251	273	11.4114
UAAGUCUCGAGUUAAGGGAUUU	chr18:55990355-55990566(+)$1	211	111	133	14.0801
CAGCCCGGGAGGUCGCCUUGGC	chr1:68151570-68151884(+)$1	314	284	306	7.7322
CUUCUCUUCUCUCCAAAGGAUC	chr22:20073583-20073898(+)$1	315	117	139	11.9061
UGAGUUAGAAGAUUUUACUGAC	chr22:20074077-20074344(+)$1	267	8	30	9.8154
GGAGCCCUGUGAAGAGGGGUUU	chr6:167365916-167366141(-)$1	225	202	224	12.9299
GCAGGGGGGGUUAGGCCCCCUG	chr7:100027475-100027783(+)$1	308	102	124	12.9299
uggggcguggggauggcgugug	chr13:113760895-113761294(+)$1	399	135	157	10.5301
GGAGGUGAUGGAUGUUUUCCUC	chr7:150935375-150935631(+)$1	256	178	200	12.9155
GGUGGGGGCAGGAUGCCCCGCU	chr9:139904664-139905000(-)$1	336	133	155	8.7495
GGCCUCAAUGGAAACGAGGCGC	chr14:24901494-24901759(+)$1	265	162	184	10.1287
GUUGCCCUGCUACCAAAUGGUA	chr6:5000732-5000990(-)$1	258	175	197	8.3653
GGCCUCUCUGCAGUCAGAGGUC	chr7:150066650-150066963(+)$1	313	117	139	8.7495
UCCUAGCGGGCGAAGCGCGGGA	chr12:62996868-62997164(+)$1	296	160	182	12.6147
UGGCGGCCCGAGCCCGGCUGGC	chr7:150935307-150935575(+)$1	268	179	201	12.0826
GGGGACGUGCAUGCUUGUCCCU	chr22:20073731-20074049(+)$1	318	223	245	8.7495
UGUCCUGCUGCUGCUGCUGACG	chr7:100172779-100173061(-)$1	282	71	93	11.9721
GCCGAGGCGGUGGGACGCCUGG	chr2:220043013-220043409(+)$1	396	196	218	6.2586
gcggccgcggccggggcgggcg	chr19:18392190-18392415(-)$1	225	14	36	11.0442

#DB
(..(((((.......)))))..	chr2:219267615-219267924(+)$1	1	198	220	12.0714
(((.(.(((......))).).)	chr8:25315648-25315940(-)$1	1	18	40	6.5690
.(((.(((........))).))	chr6:128327053-128327395(-)$1	1	99	121	7.5499
((((((.(.......).)))))	chr12:58217991-58218476(-)$1	1	423	445	11.6790
.((((((.........))))))	chr14:24901231-24901497(+)$1	1	26	48	10.2377
.(((((((.......)))))))	chr18:55990366-55990591(+)$1	1	100	122	14.0801
)(((((((.......)))))))	chr7:150935657-150935886(+)$1	1	205	227	13.4764
(((((((((......)))))))	chr17:36760615-36760867(-)$1	1	196	218	7.7550
.(.(((.........))).)..	chr14:24901297-24901621(+)$1	1	119	141	10.8637
((((((.........)))))).	chr17:37899048-37899310(+)$1	1	44	66	9.9953
(.((((((.......)))))).	chr14:103574564-103574856(+)$1	1	14	36	11.9495
((((.(((.......))).)))	chr19:991810-992093(+)$1	1	101	123	12.7414
(((((((........)))))))	chr12:111168338-111168635(-)$1	1	227	249	8.7495
.(((((((.......)))))))	chr6:91254232-91254531(-)$1	1	266	288	14.0801
(((..(((.......))).)))	chr14:24566114-24566358(+)$1	1	111	133	12.8312
((((..((.........))..)	chr16:24802021-24802339(+)$1	1	232	254	8.3142
((((((((.......)))))))	chr13:111315268-111315519(-)$1	1	182	204	13.6716
(((..(((.......)))))))	chr2:101437409-101437658(+)$1	1	19	41	12.5295
)(((((((.......)))))))	chr5:139493782-139494104(+)$1	1	261	283	12.8797
(..(((((.......)))))..	chr2:219267724-219267949(+)$1	1	89	111	12.0714
((((((((.......)))))))	chr3:42661364-42661641(+)$1	1	126	148	13.8295
((((((((.......)).))))	chr20:401383-401625(+)$1	1	213	235	11.2384
(((((.((.......)).))))	chr15:80215296-80215599(-)$1	1	251	273	11.4114
.(((((((.......)))))))	chr18:55990355-55990566(+)$1	1	111	133	14.0801
(((((.(((......))).)))	chr1:68151570-68151884(+)$1	1	284	306	7.7322
..((.(((.......)))))..	chr22:20073583-20073898(+)$1	1	117	139	11.9061
...(((((.........)))))	chr22:20074077-20074344(+)$1	1	8	30	9.8154
.(((((((.......)))))))	chr6:167365916-167366141(-)$1	1	202	224	12.9299
.(((((((.......)))))))	chr7:100027475-100027783(+)$1	1	102	124	12.9299
..(.((((.......)))).).	chr13:113760895-113761294(+)$1	1	135	157	10.5301
(((((.((.......)).))))	chr7:150935375-150935631(+)$1	1	178	200	12.9155
(((((((........)))))))	chr9:139904664-139905000(-)$1	1	133	155	8.7495
.(((((.........))))).)	chr14:24901494-24901759(+)$1	1	162	184	10.1287
((((((.(........).))))	chr6:5000732-5000990(-)$1	1	175	197	8.3653
(((((((........)))))))	chr7:150066650-150066963(+)$1	1	117	139	8.7495
((((.(((.......)))))))	chr12:62996868-62997164(+)$1	1	160	182	12.6147
((.(((((.......))))).)	chr7:150935307-150935575(+)$1	1	179	201	12.0826
(((((((........)))))))	chr22:20073731-20074049(+)$1	1	223	245	8.7495
.(((..((.......)).))))	chr7:100172779-100173061(-)$1	1	71	93	11.9721
(((.(((((......))))).)	chr2:220043013-220043409(+)$1	1	196	218	6.2586
(((.((((.......)))).))	chr19:18392190-18392415(-)$1	1	14	36	11.0442

#PSSM
g : 0.14	! : 0.12	f : 0.12	= : 0.09	e : 0.07	h : 0.07	[ : 0.07	" : 0.07	a : 0.04	: : 0.04	F : 0.02	b : 0.02	d : 0.02	i : 0.02	E : 0.02	
g : 0.31	f : 0.14	e : 0.09	= : 0.09	! : 0.07	h : 0.07	c : 0.04	" : 0.04	a : 0.02	[ : 0.02	d : 0.02	i : 0.02	
g : 0.31	f : 0.14	e : 0.09	h : 0.07	= : 0.07	! : 0.04	c : 0.04	[ : 0.04	a : 0.04	d : 0.02	i : 0.02	b : 0.02	" : 0.02	
g : 0.31	e : 0.12	f : 0.12	[ : 0.09	c : 0.07	h : 0.07	= : 0.07	! : 0.04	d : 0.02	i : 0.02	b : 0.02	
g : 0.31	e : 0.14	[ : 0.09	! : 0.09	h : 0.07	f : 0.07	= : 0.07	d : 0.04	a : 0.02	c : 0.02	i : 0.02	
g : 0.29	c : 0.17	e : 0.14	[ : 0.09	f : 0.07	h : 0.04	= : 0.04	! : 0.04	d : 0.04	i : 0.02	
g : 0.26	c : 0.19	e : 0.12	b : 0.12	r : 0.07	[ : 0.04	f : 0.04	= : 0.04	d : 0.04	i : 0.02	
c : 0.19	g : 0.17	e : 0.12	b : 0.12	r : 0.09	q : 0.09	a : 0.04	= : 0.04	d : 0.04	f : 0.02	i : 0.02	
p : 0.60	q : 0.14	r : 0.14	c : 0.04	= : 0.02	e : 0.02	
p : 0.60	q : 0.14	r : 0.14	o : 0.09	
p : 0.60	q : 0.14	r : 0.14	o : 0.09	
p : 0.60	q : 0.14	r : 0.14	o : 0.09	
p : 0.60	q : 0.14	r : 0.14	o : 0.09	
p : 0.60	q : 0.14	r : 0.14	o : 0.09	
p : 0.60	q : 0.14	r : 0.14	o : 0.09	
g : 0.26	c : 0.19	e : 0.12	b : 0.09	r : 0.07	q : 0.04	= : 0.04	f : 0.04	d : 0.04	a : 0.02	i : 0.02	
g : 0.26	c : 0.21	e : 0.12	b : 0.09	f : 0.07	= : 0.04	r : 0.04	d : 0.04	] : 0.02	i : 0.02	a : 0.02	
g : 0.26	c : 0.21	e : 0.14	] : 0.12	f : 0.07	= : 0.04	d : 0.04	h : 0.02	b : 0.02	i : 0.02	
g : 0.29	e : 0.17	] : 0.12	f : 0.09	h : 0.07	= : 0.07	c : 0.04	b : 0.04	d : 0.04	i : 0.02	
g : 0.31	e : 0.17	f : 0.14	] : 0.07	h : 0.07	= : 0.07	a : 0.04	2 : 0.02	i : 0.02	b : 0.02	c : 0.02	
g : 0.31	f : 0.14	2 : 0.09	] : 0.09	h : 0.07	= : 0.07	e : 0.07	c : 0.04	3 : 0.02	i : 0.02	a : 0.02	
g : 0.31	f : 0.12	e : 0.09	2 : 0.07	h : 0.07	= : 0.07	d : 0.07	] : 0.04	c : 0.02	3 : 0.02	i : 0.02	5 : 0.02	a : 0.02	

#score	452.1311672506196
#seq	41
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_UTR_m1_run2.txt

#BEAR
b!!ccc[bb[a[eeeeeooooooeeeeea]bbccc22bb:	chr20:62563978-62564220(+)$1	242	193	233	13.0026
ggga[ggggggg[ddddoooooodddd22ggggggg]a33	chr20:361847-362096(+)$1	249	127	167	16.6766
ee[bb[ccc[a[eeeeeooooooeeeee]a]cccbb333e	chr3:100428776-100429002(+)$1	226	63	103	14.3092
eeeeeccc[ccc"""bb[aooooooa]bb22ccc]ccc]e	chr2:191513906-191514188(+)$1	282	127	167	13.7791
[dddd[eeeeea!!ddddoooooodddd22a]eeeeeddd	chr19:1882667-1882927(-)$1	260	205	245	13.8449
iiii####dddd!!cccooooooccc22dddd]iiiiiii	chr2:225338431-225338732(-)$1	301	202	242	17.1695
####iiiiiiiii[cccooooooccc]iiiiiiiii22dd	chr19:44111530-44111818(-)$1	288	12	52	18.4022
bgggggggdddd!!cccnnnnnccc22dddd]ggggggg]	chr22:50013719-50013948(-)$1	229	120	160	12.5581
hh"""ffffffa[ddddoooooodddd]a333ffffff44	chr2:183902762-183903036(-)$1	274	144	184	15.3866
a[a[ffffff[ffffffooooooffffff]ffffff]a]a	chr16:30535363-30535621(-)$1	258	181	221	13.2794
$dddd"""dddd!!ddddoooooodddd22dddd333ddd	chr17:79879815-79880058(-)$1	243	187	227	14.0855
ff"""==========[aqqqqqqqqa]==========333	chr19:1881964-1882211(-)$1	247	87	127	13.1104
eee"""ffffff"""bboooooobb4444ffffff]eeee	chr17:17724043-17724305(-)$1	262	31	71	14.3700
[============a[ccca!!dddd[a!!==========!	chr9:139560089-139560364(+)$1	275	132	172	12.0633
ccc!!bb"""bb!!ddddmmmmdddd22bb333bb22ccc	chr15:76226839-76227113(+)$1	274	185	225	11.4507
ddddffffff!!a[cccooooooccc]a4444ffffff]d	chrX:153362144-153362441(-)$1	297	251	291	16.3730
e[dddd[bb[a"""cccooooooccca]bbdddd]eeeee	chr19:18548455-18548762(-)$1	307	150	190	15.8730
g[cccccc"""a!!ccc$$$$$============lll===	chr12:111157440-111157697(-)$1	257	91	131	11.8250
ca[bb[bb[bb[ddddoooooodddd]bb]bb22bb]a]c	chr22:50020584-50020840(-)$1	256	61	101	13.0756
gggffffff####ddddoooooodddd4444ffffff]gg	chr19:2426620-2426858(-)$1	238	61	101	15.7049
$ccc[a[bb$$$$$cccnnnnnccc4444bb]a]ccc333	chr15:64752846-64753076(+)$1	230	20	60	12.8574
e==========!!eeeeellleeeee4444==========	chr16:28875563-28875883(+)$1	320	153	193	14.4901
eeeee[ccc[bb[ddddooooooddddbbccc22eeeee]	chr12:30907674-30907936(-)$1	262	137	177	14.9199
bb[a[a[eeeee[eeeeeooooooeeeee]eeeee]a]a]	chr15:100106528-100106812(+)$1	284	106	146	12.9275
dd[ccc$$$$$bb[cccooooooccc]bb333cccddddH	chr13:79888520-79888776(-)$1	256	182	222	15.6155
[dddd[ccc!!bb[cccooooooccc]bb55555ccc]dd	chr16:28835459-28835716(+)$1	257	90	130	13.1875
[dddd"""dddd[eeeeeooooooeeeee]dddddddd]b	chrX:133930861-133931138(-)$1	277	180	220	12.2836
========!!bb!!cccooooooccc]bb]==========	chr1:245026240-245026516(-)$1	276	155	195	20.5713
=========$$$$$ddddoooooodddd22==========	chr17:34174138-34174399(+)$1	261	192	232	17.2393
ggga[ggggggg[ddddoooooodddd22ggggggg]a33	chr20:361896-362161(+)$1	265	78	118	16.6766
eee!!ccc####ddddoooooodddd]ccc4444eeeee]	chr19:12811286-12811559(-)$1	273	146	186	15.1844
ddda[dddd!!ffffffooooooffffff]dddd]a22dd	chr19:41770955-41771195(+)$1	240	140	180	12.9532
fff!!ffffff[bbcccooooooccc]bb]ffffff22ff	chr19:49842759-49843011(-)$1	252	184	224	14.9658
ccggggggg[dddd[bboooooobb22dddd]ggggggg:	chr12:56121316-56121556(-)$1	240	197	237	13.2012
=========[bb!!cccooooooccc]bb]==========	chr12:49414579-49414821(-)$1	242	201	241	20.5110
b[dddd[dddd"""cccoooooocccdddddddd]bbeee	chr2:20549954-20550207(-)$1	253	154	194	14.5694
eeeee$$$$$ccc[cccooooooccc]ccc22eeeee:::	chr2:97535506-97535791(-)$1	285	65	105	12.6027
hhhhhh!!gggggggcccnnnnnccc]ggggggg333hhh	chr19:18554128-18554416(-)$1	288	21	61	12.1025
========!!bb!!cccooooooccc]bb]==========	chr1:245026116-245026419(-)$1	303	58	98	20.5713
========!!ccc!!ammmma22ccc]============B	chr11:67980666-67980986(-)$1	320	248	288	13.1713
"""iiiiiiiii[a[cccnnnnnccc]a]iiiiiiiii33	chr16:90018914-90019185(+)$1	271	53	93	15.5831
%%%%%a[ccc####cccooooooccc22ccc]a4444fff	chr19:59084335-59084651(-)$1	316	108	148	14.1386
eeeea[dddd####cccooooooccc4444dddd]a]eee	chr17:48542225-48542520(+)$1	295	170	210	16.7677
dd!!ddddbbbb!!ddddoooooodddd22bb]bb]dddd	chr20:35491679-35491988(-)$1	309	100	140	13.0517
iiiiiiiii[cccssssssssssccc]iiiiiiiiieeee	chr1:38396951-38397243(-)$1	292	16	56	12.0287
$$$$dddd[ggggggg[ccclllccc333ggggggg22dd	chrX:48436587-48436836(+)$1	249	150	190	11.4852
d[ggggggg[bb!!ccca[==========!!bbggggggg	chr2:61764092-61764341(-)$1	249	72	112	11.4513
d[a[dddd"""bb[bb[ccclllccc]bb]bb333dddd2	chr19:34287641-34287920(+)$1	279	47	87	11.7272
ggggggg!!ccc[ddddnnnnnddddccc]ggggggg]cc	chr8:102217317-102217686(-)$1	369	270	310	13.0594
""===========[bbqqqqqqqqbb]===========33	chr11:61197024-61197321(-)$1	297	158	198	13.1025
[eeeee"""bb[bbcccooooooccc]bb]bb]eeeeea:	chr1:26797411-26797716(+)$1	305	139	179	14.8741
iiiiiiiiadddd[cccooooooccc]dddd4444a]iii	chr3:197024234-197024489(-)$1	255	5	45	17.0797

#otherMatches

#Seq PSSM
GAAUCCACACGUGGACCAUUGUGGGUCCCUUGGGAGGCCA	chr20:62563978-62564220(+)$1	242	193	233	13.0026
CGCGGCCAGGUCAGAUCCCUUUUGAUCCGGGCCUGGGCUG	chr20:361847-362096(+)$1	249	127	167	16.6766
CGCGCCUGGGGGGCUCCGGGAGGGGAGUGCGCCAGCUAAU	chr3:100428776-100429002(+)$1	226	63	103	14.3092
GGCUGAGCAGUCCUCGGGGAGAGCGCGCCAAGACCGCUGC	chr2:191513906-191514188(+)$1	282	127	167	13.7791
UAUUGUGGUUGCUUUAGCAACUUAGCUGUUGUCGACUUAA	chr19:1882667-1882927(-)$1	260	205	245	13.8449
AAUGCAGAUUUCCCAGUUAUCUUGCUCUGAAGACAUUUCU	chr2:225338431-225338732(-)$1	301	202	242	17.1695
ACGGGCACUUCAUGCUGCAUGCCCGGGGUGAGGUGUAGGC	chr19:44111530-44111818(-)$1	288	12	52	18.4022
ggcagacugagagugucacagagaccaucucaagucugca	chr22:50013719-50013948(-)$1	229	120	160	12.5581
GCGAAGGCCGCGGGCCCGUGACUgggcgcgaggcggccgg	chr2:183902762-183903036(-)$1	274	144	184	15.3866
GGGAGUGGGGCCCCGGGGUGGGGCCUGGGCCUCUGCGUGC	chr16:30535363-30535621(-)$1	258	181	221	13.2794
AGACCAAAUCUCUGGUUGUGCGCUUAACGUGAGGGUGGGU	chr17:79879815-79880058(-)$1	243	187	227	14.0855
GUUUCGGGGGUGUGGGCGGGGCUGGGGUCAUAUCCCCUGC	chr19:1881964-1882211(-)$1	247	87	127	13.1104
gcacaugcucacuggaugagugaauGAAUGUGAGCCUGCU	chr17:17724043-17724305(-)$1	262	31	71	14.3700
gggcucgggcggcaguggcggcggcgcgugcgcgccccgg	chr9:139560089-139560364(+)$1	275	132	172	12.0633
UGAAUAUUUAUAUUUAGCUCUUGCUAUUUAGCUAUUAUCA	chr15:76226839-76227113(+)$1	274	185	225	11.4507
UCCCCUUCGCCGGCGAUCUUCCAGUUACAUAAGUGGAGUG	chrX:153362144-153362441(-)$1	297	251	291	16.3730
AAGGGCACGGGACCCGGGAUUCACUGCGCGGCCUGUCUUC	chr19:18548455-18548762(-)$1	307	150	190	15.8730
AUUUUGGUUUUGCUUCUUUCAAAUAGUCUGUUUUCCAAAG	chr12:111157440-111157697(-)$1	257	91	131	11.8250
CCUCCUGGUGGGAGGAACUCCCUCCUGUCUCCUUGGUGUG	chr22:50020584-50020840(-)$1	256	61	101	13.0756
UGCCCCCUGCCAGCCAGUGCAGCUUGGAUCUCGGGGGUGU	chr19:2426620-2426858(-)$1	238	61	101	15.7049
aggcgcggggagggggcagagagccagagccggagccgga	chr15:64752846-64753076(+)$1	230	20	60	12.8574
GUGUGAGCCGAGGUGGCCGCUGGCUGGAGAUUGGUUUGCA	chr16:28875563-28875883(+)$1	320	153	193	14.4901
GGAGGAGACGCGAGUGCGGGGUGGCGCCGGUCCACCUCCG	chr12:30907674-30907936(-)$1	262	137	177	14.9199
gggcgggccgguggggcuggauggggcucggcugggcggg	chr15:100106528-100106812(+)$1	284	106	146	12.9275
UGUGCAUUUCUUCUGAAUAUACUUUCUGAUGUUGCCAAGG	chr13:79888520-79888776(-)$1	256	182	222	15.6155
GAGGGGCUCGUCUGGUGGCAGUGCAUGAGUAGUGGAGGCC	chr16:28835459-28835716(+)$1	257	90	130	13.1875
GGGCUGGACCGGGUCCCCGAGCAUGGGGAGCUGGAGCCGC	chrX:133930861-133931138(-)$1	277	180	220	12.2836
gggaggggagcgccgccgcgccgggcucggccccUCCCCC	chr1:245026240-245026516(-)$1	276	155	195	20.5713
UCAGUAAAUUAAAAUGUUACUUUAAACAAUAUUUAUUGAG	chr17:34174138-34174399(+)$1	261	192	232	17.2393
CGCGGCCAGGUCAGAUCCCUUUUGAUCCGGGCCUGGGCUG	chr20:361896-362161(+)$1	265	78	118	16.6766
AGUCGCCCUGUCAGCACGCACAUGCUUGGGACCCACUCCA	chr19:12811286-12811559(-)$1	273	146	186	15.1844
GGUCGUGCUAGCCCAGCGUGUGGGCUGGGGGGUGGGGAGC	chr19:41770955-41771195(+)$1	240	140	180	12.9532
CCCCACCCUCCGGUGCUGGGUGGAGCGGCGGGAGGGCCGG	chr19:49842759-49843011(-)$1	252	184	224	14.9658
GAGGUUUUUGAAUUUGGUCAUGUCCCUGAUUAAAGAGCCG	chr12:56121316-56121556(-)$1	240	197	237	13.2012
AGGAGGGAGCUAAACCUAGGACCAGGAUAUCUCCCUCCUG	chr12:49414579-49414821(-)$1	242	201	241	20.5110
CGCUGGAGGUUAGAGACCGAGCUGUCGGCCCUAGGGUUCG	chr2:20549954-20550207(-)$1	253	154	194	14.5694
gccgcggagggcuggcgggcgagcgcgggcaggcggcgac	chr2:97535506-97535791(-)$1	285	65	105	12.6027
GUAUGUGGGGACCCCCCAGGGCAUGGUGGGGUCUGAGGCG	chr19:18554128-18554416(-)$1	288	21	61	12.1025
gggaggggagcgccgccgcgccgggcucggccccUCCCCC	chr1:245026116-245026419(-)$1	303	58	98	20.5713
CUCUGGAAUUAUUUUUGGUGAUUAAUUUUCUGGGGGGGAC	chr11:67980666-67980986(-)$1	320	248	288	13.1713
AGAAGGAGGAGUGAUGUUGGGAUGGCCUGAUUUCUCCUGU	chr16:90018914-90019185(+)$1	271	53	93	15.5831
GGGAAGGGCAAGGAGGCGCUCGAGCUGGUGCGCGGAGCAU	chr19:59084335-59084651(-)$1	316	108	148	14.1386
UGGCUGGGUCAGAACCUGCAAAGAGGCAAAGAUCGAUGUC	chr17:48542225-48542520(+)$1	295	170	210	16.7677
GGACGCGGUGUCGGGGCCGAGGUGGGCCGAGAGCAGCCGC	chr20:35491679-35491988(-)$1	309	100	140	13.0517
GUCCUGGUGGCCCUCUGGAGGCUGGGACACUGGGGCAGAA	chr1:38396951-38397243(-)$1	292	16	56	12.0287
aucaccugaggucaggaguucgagaccagccuggccaaca	chrX:48436587-48436836(+)$1	249	150	190	11.4852
CAUCACGUGGCCCCCUCGGUGGAGAGCUUGGGAUGGGGGA	chr2:61764092-61764341(-)$1	249	72	112	11.4513
cgcgccgcgaggggccgcgugaagcgggggccggggcggg	chr19:34287641-34287920(+)$1	279	47	87	11.7272
CCGCCGGUCAGCUGCCAGAGUGUGGCGCUCCCGGUGGACG	chr8:102217317-102217686(-)$1	369	270	310	13.0594
GGCGGCUGGAGCUGCUUGACACCUGGGGGCUCUGGCCGGA	chr11:61197024-61197321(-)$1	297	158	198	13.1025
UGGUGGAAAGAAGAGGCAGAGAGGUCGUCGUCGUCGCCCA	chr1:26797411-26797716(+)$1	305	139	179	14.8741
GCGCUCUGCGGCCGCUGCUGGCUCAGGGGCCAAGGGUCGG	chr3:197024234-197024489(-)$1	255	5	45	17.0797

#DB
(..(((.((.(.(((((......)))))).)))))..)).	chr20:62563978-62564220(+)$1	1	193	233	13.0026
((((.(((((((.((((......))))..))))))).)..	chr20:361847-362096(+)$1	1	127	167	16.6766
((.((.(((.(.(((((......))))).).)))))...)	chr3:100428776-100429002(+)$1	1	63	103	14.3092
((((((((.(((...((.(......).))..))).))).)	chr2:191513906-191514188(+)$1	1	127	167	13.7791
.((((.((((((..((((......))))..).))))))))	chr19:1882667-1882927(-)$1	1	205	245	13.8449
((((....((((..(((......)))..)))).)))))))	chr2:225338431-225338732(-)$1	1	202	242	17.1695
....(((((((((.(((......))).)))))))))..))	chr19:44111530-44111818(-)$1	1	12	52	18.4022
((((((((((((..(((.....)))..)))).))))))).	chr22:50013719-50013948(-)$1	1	120	160	12.5581
((...(((((((.((((......)))).)...))))))..	chr2:183902762-183903036(-)$1	1	144	184	15.3866
(.(.((((((.((((((......)))))).)))))).).)	chr16:30535363-30535621(-)$1	1	181	221	13.2794
.((((...((((..((((......))))..))))...)))	chr17:79879815-79880058(-)$1	1	187	227	14.0855
((...((((((((((.(........).))))))))))...	chr19:1881964-1882211(-)$1	1	87	127	13.1104
(((...((((((...((......))....)))))).))))	chr17:17724043-17724305(-)$1	1	31	71	14.3700
.(((((((((((((.((((..((((.(..((((((((((.	chr9:139560089-139560364(+)$1	1	132	172	12.0633
(((..((...((..((((....))))..))...))..)))	chr15:76226839-76227113(+)$1	1	185	225	11.4507
((((((((((..(.(((......))).)....)))))).)	chrX:153362144-153362441(-)$1	1	251	291	16.3730
(.((((.((.(...(((......)))).)))))).)))))	chr19:18548455-18548762(-)$1	1	150	190	15.8730
(.((((((...(..(((.....((((((((((((...)))	chr12:111157440-111157697(-)$1	1	91	131	11.8250
((.((.((.((.((((......)))).)).))..)).).)	chr22:50020584-50020840(-)$1	1	61	101	13.0756
(((((((((....((((......))))....)))))).))	chr19:2426620-2426858(-)$1	1	61	101	15.7049
.(((.(.((.....(((.....)))....)).).)))...	chr15:64752846-64753076(+)$1	1	20	60	12.8574
)((((((((((..(((((...)))))....))))))))))	chr16:28875563-28875883(+)$1	1	153	193	14.4901
(((((.(((.((.((((......)))))))))..))))).	chr12:30907674-30907936(-)$1	1	137	177	14.9199
((.(.(.(((((.(((((......))))).))))).).).	chr15:100106528-100106812(+)$1	1	106	146	12.9275
((.(((.....((.(((......))).))...))))))))	chr13:79888520-79888776(-)$1	1	182	222	15.6155
.((((.(((..((.(((......))).)).....))).))	chr16:28835459-28835716(+)$1	1	90	130	13.1875
.((((...((((.(((((......))))).)))))))).)	chrX:133930861-133931138(-)$1	1	180	220	12.2836
((((((((..((..(((......))).)).))))))))))	chr1:245026240-245026516(-)$1	1	155	195	20.5713
(((((((((.....((((......))))..))))))))))	chr17:34174138-34174399(+)$1	1	192	232	17.2393
((((.(((((((.((((......))))..))))))).)..	chr20:361896-362161(+)$1	1	78	118	16.6766
(((..(((....((((......)))).)))....))))).	chr19:12811286-12811559(-)$1	1	146	186	15.1844
((((.((((..((((((......)))))).)))).)..))	chr19:41770955-41771195(+)$1	1	140	180	12.9532
(((..((((((.(((((......))).)).))))))..))	chr19:49842759-49843011(-)$1	1	184	224	14.9658
))(((((((.((((.((......))..)))).))))))).	chr12:56121316-56121556(-)$1	1	197	237	13.2012
(((((((((.((..(((......))).)).))))))))))	chr12:49414579-49414821(-)$1	1	201	241	20.5110
(.((((.((((...(((......))))))))))).)))))	chr2:20549954-20550207(-)$1	1	154	194	14.5694
(((((.....(((.(((......))).)))..)))))...	chr2:97535506-97535791(-)$1	1	65	105	12.6027
((((((..((((((((((.....))).)))))))...)))	chr19:18554128-18554416(-)$1	1	21	61	12.1025
((((((((..((..(((......))).)).))))))))))	chr1:245026116-245026419(-)$1	1	58	98	20.5713
((((((((..(((..(....)..))).)))))))))))))	chr11:67980666-67980986(-)$1	1	248	288	13.1713
...(((((((((.(.(((.....))).).)))))))))..	chr16:90018914-90019185(+)$1	1	53	93	15.5831
.....(.(((....(((......)))..))).)....)))	chr19:59084335-59084651(-)$1	1	108	148	14.1386
(((((.((((....(((......)))....)))).).)))	chr17:48542225-48542520(+)$1	1	170	210	16.7677
((..((((((((..((((......))))..)).)).))))	chr20:35491679-35491988(-)$1	1	100	140	13.0517
(((((((((.(((..........))).)))))))))((((	chr1:38396951-38397243(-)$1	1	16	56	12.0287
....((((.(((((((.(((...)))...)))))))..))	chrX:48436587-48436836(+)$1	1	150	190	11.4852
(.(((((((.((..((((.((((((((((..(((((((((	chr2:61764092-61764341(-)$1	1	72	112	11.4513
(.(.((((...((.((.(((...))).)).))...)))).	chr19:34287641-34287920(+)$1	1	47	87	11.7272
(((((((..(((.((((.....))))))).))))))).))	chr8:102217317-102217686(-)$1	1	270	310	13.0594
..(((((((((((.((........)).)))))))))))..	chr11:61197024-61197321(-)$1	1	158	198	13.1025
.(((((...((.(((((......))).)).)).)))))).	chr1:26797411-26797716(+)$1	1	139	179	14.8741
(((((((((((((.(((......))).))))....).)))	chr3:197024234-197024489(-)$1	1	5	45	17.0797

#PSSM
e : 0.17	d : 0.11	g : 0.09	[ : 0.09	= : 0.09	b : 0.07	i : 0.05	$ : 0.05	c : 0.05	h : 0.03	f : 0.03	" : 0.03	# : 0.01	a : 0.01	% : 0.01	
e : 0.15	d : 0.15	= : 0.13	[ : 0.11	g : 0.09	i : 0.05	c : 0.05	h : 0.03	f : 0.03	" : 0.03	! : 0.01	# : 0.01	a : 0.01	b : 0.01	% : 0.01	$ : 0.01	
d : 0.15	= : 0.15	g : 0.13	e : 0.13	[ : 0.07	i : 0.05	" : 0.05	c : 0.05	! : 0.03	a : 0.03	# : 0.01	f : 0.01	h : 0.01	% : 0.01	$ : 0.01	
= : 0.15	d : 0.13	e : 0.09	c : 0.07	a : 0.07	i : 0.07	g : 0.07	! : 0.07	" : 0.05	b : 0.03	[ : 0.03	# : 0.01	f : 0.01	h : 0.01	% : 0.01	$ : 0.01	
d : 0.17	= : 0.15	[ : 0.09	e : 0.07	i : 0.07	g : 0.07	c : 0.05	" : 0.05	f : 0.05	! : 0.05	b : 0.03	# : 0.01	h : 0.01	% : 0.01	a : 0.01	
= : 0.17	g : 0.11	[ : 0.11	d : 0.11	c : 0.09	f : 0.09	i : 0.07	" : 0.05	a : 0.05	# : 0.01	b : 0.01	$ : 0.01	h : 0.01	e : 0.01	
= : 0.17	[ : 0.11	g : 0.11	c : 0.11	f : 0.11	d : 0.09	i : 0.07	" : 0.05	b : 0.03	$ : 0.03	e : 0.01	# : 0.01	! : 0.01	
= : 0.17	c : 0.13	f : 0.11	d : 0.11	g : 0.09	b : 0.07	i : 0.07	" : 0.07	e : 0.03	$ : 0.03	! : 0.03	# : 0.01	
d : 0.13	f : 0.11	= : 0.11	g : 0.09	b : 0.07	c : 0.07	" : 0.07	! : 0.07	[ : 0.05	i : 0.05	e : 0.03	$ : 0.03	# : 0.01	a : 0.01	
[ : 0.15	d : 0.13	f : 0.09	! : 0.09	g : 0.07	= : 0.07	$ : 0.07	c : 0.05	" : 0.05	b : 0.05	e : 0.03	i : 0.03	# : 0.03	
b : 0.17	d : 0.13	c : 0.09	g : 0.07	= : 0.07	# : 0.07	a : 0.05	f : 0.05	! : 0.05	$ : 0.05	e : 0.03	i : 0.03	" : 0.03	[ : 0.01	
b : 0.19	d : 0.11	[ : 0.09	c : 0.09	g : 0.07	# : 0.07	a : 0.05	f : 0.05	= : 0.05	i : 0.03	! : 0.03	" : 0.03	$ : 0.03	e : 0.01	
! : 0.23	[ : 0.15	b : 0.09	" : 0.07	d : 0.07	= : 0.05	# : 0.05	c : 0.05	e : 0.03	f : 0.03	$ : 0.03	g : 0.03	i : 0.01	a : 0.01	
! : 0.23	d : 0.17	[ : 0.15	e : 0.09	" : 0.07	f : 0.03	a : 0.03	$ : 0.03	b : 0.03	g : 0.03	# : 0.03	= : 0.01	s : 0.01	
c : 0.38	d : 0.24	e : 0.09	[ : 0.05	" : 0.03	f : 0.03	g : 0.03	b : 0.03	= : 0.01	! : 0.01	s : 0.01	
c : 0.44	d : 0.24	e : 0.09	b : 0.09	f : 0.03	[ : 0.01	a : 0.01	s : 0.01	g : 0.01	
c : 0.44	d : 0.21	e : 0.09	b : 0.05	f : 0.03	o : 0.03	[ : 0.03	a : 0.01	m : 0.01	s : 0.01	q : 0.01	
o : 0.55	d : 0.09	c : 0.09	n : 0.05	e : 0.05	q : 0.03	[ : 0.01	$ : 0.01	m : 0.01	s : 0.01	a : 0.01	
o : 0.67	n : 0.09	a : 0.03	q : 0.03	m : 0.03	c : 0.03	$ : 0.01	l : 0.01	s : 0.01	[ : 0.01	
o : 0.69	n : 0.09	q : 0.03	m : 0.03	c : 0.03	! : 0.01	$ : 0.01	l : 0.01	s : 0.01	= : 0.01	
o : 0.69	n : 0.09	l : 0.05	q : 0.03	! : 0.01	m : 0.01	$ : 0.01	a : 0.01	s : 0.01	= : 0.01	
o : 0.69	n : 0.09	q : 0.03	l : 0.03	d : 0.01	m : 0.01	$ : 0.01	e : 0.01	2 : 0.01	s : 0.01	= : 0.01	
o : 0.65	d : 0.09	c : 0.03	q : 0.03	= : 0.03	n : 0.03	l : 0.03	e : 0.01	2 : 0.01	s : 0.01	
c : 0.46	d : 0.19	o : 0.13	e : 0.05	f : 0.03	q : 0.03	b : 0.03	= : 0.03	
c : 0.46	d : 0.26	e : 0.09	b : 0.05	f : 0.03	= : 0.03	o : 0.01	q : 0.01	
c : 0.42	d : 0.24	e : 0.09	a : 0.03	2 : 0.03	f : 0.03	4 : 0.03	= : 0.03	[ : 0.01	b : 0.01	
] : 0.40	d : 0.19	2 : 0.09	e : 0.07	4 : 0.07	f : 0.03	a : 0.03	= : 0.03	3 : 0.01	c : 0.01	
b : 0.21	d : 0.15	2 : 0.09	= : 0.09	4 : 0.09	e : 0.07	c : 0.05	i : 0.03	] : 0.03	f : 0.03	a : 0.03	! : 0.01	g : 0.01	3 : 0.01	
b : 0.24	2 : 0.11	4 : 0.11	d : 0.09	= : 0.09	c : 0.07	a : 0.03	] : 0.03	i : 0.03	f : 0.03	e : 0.03	! : 0.01	g : 0.01	3 : 0.01	
] : 0.24	2 : 0.09	d : 0.09	= : 0.09	g : 0.07	4 : 0.07	c : 0.07	i : 0.05	b : 0.05	3 : 0.03	a : 0.01	f : 0.01	5 : 0.01	! : 0.01	
d : 0.19	= : 0.19	b : 0.11	g : 0.09	i : 0.05	3 : 0.05	f : 0.05	4 : 0.05	2 : 0.03	c : 0.03	] : 0.01	a : 0.01	e : 0.01	5 : 0.01	! : 0.01	
= : 0.19	d : 0.13	b : 0.11	g : 0.09	] : 0.09	f : 0.07	c : 0.05	i : 0.05	3 : 0.05	4 : 0.05	e : 0.01	5 : 0.01	2 : 0.01	
= : 0.19	g : 0.13	f : 0.11	d : 0.11	c : 0.07	e : 0.05	] : 0.05	i : 0.05	3 : 0.03	2 : 0.03	a : 0.03	4 : 0.03	5 : 0.01	b : 0.01	
= : 0.19	g : 0.15	f : 0.11	d : 0.11	c : 0.07	e : 0.07	i : 0.07	4 : 0.05	b : 0.03	2 : 0.03	] : 0.01	5 : 0.01	3 : 0.01	
= : 0.17	g : 0.13	e : 0.11	f : 0.11	] : 0.09	c : 0.07	b : 0.07	i : 0.07	3 : 0.05	4 : 0.03	l : 0.01	d : 0.01	
= : 0.17	g : 0.13	e : 0.11	f : 0.09	i : 0.07	b : 0.05	c : 0.05	] : 0.05	d : 0.05	a : 0.05	2 : 0.03	3 : 0.03	l : 0.01	4 : 0.01	
= : 0.17	e : 0.15	2 : 0.11	] : 0.11	g : 0.07	d : 0.07	3 : 0.05	c : 0.05	f : 0.05	i : 0.03	l : 0.01	a : 0.01	b : 0.01	4 : 0.01	
= : 0.17	e : 0.15	d : 0.11	a : 0.07	2 : 0.07	] : 0.07	3 : 0.05	i : 0.05	g : 0.05	f : 0.05	c : 0.03	b : 0.01	: : 0.01	h : 0.01	
d : 0.17	= : 0.15	3 : 0.13	e : 0.13	] : 0.09	g : 0.07	i : 0.03	c : 0.03	a : 0.03	f : 0.03	b : 0.01	4 : 0.01	: : 0.01	h : 0.01	
d : 0.15	e : 0.13	3 : 0.11	= : 0.11	: : 0.07	] : 0.07	c : 0.05	i : 0.03	g : 0.03	f : 0.03	4 : 0.01	a : 0.01	! : 0.01	H : 0.01	b : 0.01	h : 0.01	B : 0.01	2 : 0.01	

#score	751.2926470724096
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_CDS_m1_run1.txt

#BEAR
ccc[a!!ffffff!!bbrrrrrrrrrbb333ffffff444	chr7:6075005-6075275(-)$1	270	62	102	14.5835
ccc[ffffff!!a[cccammmma]ccc]a22ffffff]cc	chr7:104752577-104752880(-)$1	303	124	164	12.9139
!==========oooooo==========22eeeee]cccbb	chr12:72255091-72255351(+)$1	260	148	188	11.7091
cffffff!!ggggggg[ccclllccc333ggggggg333f	chr3:99549283-99549558(+)$1	275	83	123	13.2160
========[accc[ddddooooooddddccc333a]====	chr1:225597989-225598219(-)$1	230	93	133	15.2140
ggggggg[eeeeeyyyyyyyyyyyyyyyyeeeee]ggggg	chr17:29631605-29631859(+)$1	254	112	152	11.4248
###cccbb[a[gggggggooooooggggggg22a]bb]cc	chr7:104753068-104753344(-)$1	276	32	72	12.4778
a:::ccc[eeeee!!cccooooooccc22eeeee]ccccc	chr17:29632117-29632359(+)$1	242	137	177	13.9356
==========!!avvvvvvvvvvvvva22==========3	chrX:41193696-41193954(+)$1	258	152	192	16.1976
===========!!ddddllldddd4444===========:	chr17:29632043-29632288(+)$1	245	0	40	12.0217
iiiiiiiiiccc"""cccooooooccc333ccc>>>>>>>	chr6:170844171-170844435(-)$1	264	172	212	16.0773
ccc[a!!ffffff!!bbrrrrrrrrrbb333ffffff444	chr7:6075119-6075377(-)$1	258	164	204	14.5835
ddddiiiiiiiii!!ddddllldddd4444iiiiiiiiiC	chr17:29631938-29632178(+)$1	240	103	143	11.9057
ccc[ccc[eeeee!!cccooooooccc22eeeee]ccc]c	chr17:29632159-29632448(+)$1	289	95	135	17.6780
ggg[bb####eeeeevvvvvvvvvvvvveeeee4444bb2	chr21:46281077-46281311(-)$1	234	57	97	12.5498
!dddd!!gggggggacccooooooccc]a]ggggggg]dd	chr7:6071077-6071356(-)$1	279	90	130	15.0512
[a!!bb[ccc[ccc!!bb[allla]bb22ccc]cccbb22	chr5:137688299-137688597(+)$1	298	143	183	12.7912
=======[aeeeee[bbqqqqqqqqbb]eeeee]a22===	chr17:29632338-29632613(+)$1	275	112	152	12.8638
ccc[bb####bb[eeeeeooooooeeeee]bb333bb]cc	chr7:104752407-104752657(-)$1	250	189	229	12.4097
####a!!cccdddd[cccooooooccc]dddd]ccc22a3	chr16:2028578-2028786(+)$1	208	16	56	14.8479
ggggg!!bbeeeee[cccnnnnnccceeeee]bb22gggg	chr1:155657981-155658195(-)$1	214	105	145	11.3661
=======[aeeeee[bbqqqqqqqqbb]eeeee]a22===	chr17:29632440-29632688(+)$1	248	10	50	12.8638
[ccc####ccc####ddddmmmmdddd22ccc333ccc]b	chr7:104753296-104753543(-)$1	247	149	189	13.1261
g"""ccc[eeeee####cccmmmmccc22eeeee22ccc2	chr3:99567695-99567949(+)$1	254	10	50	13.8425
c[iiiiiiiii"""ddddoooooodddd333iiiiiiiii	chr3:99567346-99567589(+)$1	243	103	143	15.7221
ccc####eeeee^^^^^^^^^^^^^^^^^^eeeee22ccc	chr19:2199725-2199994(+)$1	269	56	96	12.7579
ffffff!!a[a[a[a!!bboooooobb22a]a]a]a22ff	chr3:47324376-47324602(+)$1	226	157	197	14.2487
=====[ggggggg[ddddssssssssssdddd]ggggggg	chr17:29622331-29622589(+)$1	258	68	108	11.8517
ccc!!a[bb[ffffffcccnnnnnccc22ffffff]bb]a	chr7:6071032-6071277(-)$1	245	60	100	11.9107
ccc[ffffff!!a[cccammmma]ccc]a22ffffff]cc	chr7:104752495-104752757(-)$1	262	1	41	12.9139

#otherMatches

#Seq PSSM
GAUGCGGAGACAUGUGAUGCUGCUAUUCUGAAUGUCUGUC	chr7:6075005-6075275(-)$1	270	62	102	14.5835
AAUGUUCCAGAAGUUGCCUGCUGAGUAUUGGCUGGAAGGU	chr7:104752577-104752880(-)$1	303	124	164	12.9139
uccauacuccaguuuguuggaguaugguaggaguauggua	chr12:72255091-72255351(+)$1	260	148	188	11.7091
GCUUUAGUGGAAAUCUUGGUGAUGCCUGUAGAUUUCGGUU	chr3:99549283-99549558(+)$1	275	83	123	13.2160
UGUUUCAGGUGGUUAUUAACUUGGUGAUGCUUUUGGCUGA	chr1:225597989-225598219(-)$1	230	93	133	15.2140
GGUUGUUGGAGUCUUCAAUGUUUUCACUUGAUUCAAACAA	chr17:29631605-29631859(+)$1	254	112	152	11.4248
UAGACCUUGGAGUCCUGUGGAUGGAUGGGGUGGUGGAUGG	chr7:104753068-104753344(-)$1	276	32	72	12.4778
CAGAGGUGAACACGGCUUGCUGGGAGGAGGUGUUGGCUAU	chr17:29632117-29632359(+)$1	242	137	177	13.9356
CGCGAAUCCCGACUGAUUAGUGACCUGGGGGGGUUUGCGG	chrX:41193696-41193954(+)$1	258	152	192	16.1976
GGGGUUUGUUUGUUACUGGUAGUAUCUAAGAUAAAUCCUG	chr17:29632043-29632288(+)$1	245	0	40	12.0217
GUACUUUGGAACUGUACCUUGGAUGGUUUUGUUUAUUAAA	chr6:170844171-170844435(-)$1	264	172	212	16.0773
GAUGCGGAGACAUGUGAUGCUGCUAUUCUGAAUGUCUGUC	chr7:6075119-6075377(-)$1	258	164	204	14.5835
GUGGGGUUUGUUUGUUACUGGUAGUAUCUAAGAUAAAUCC	chr17:29631938-29632178(+)$1	240	103	143	11.9057
CAGAGGUGAACACGGCUUGCUGGGAGGAGGUGUUGGCUAU	chr17:29632159-29632448(+)$1	289	95	135	17.6780
GCAGAGCCUGGACAGUUCUUUGGUUUUUCUGUUGUUUCUA	chr21:46281077-46281311(-)$1	234	57	97	12.5498
AGCCUGACUUUUUUCCAGAAGUGACUGAGCAGAAAAGAGG	chr7:6071077-6071356(-)$1	279	90	130	15.0512
gggaggcggcgggcgggagcgcgggucaggccggccccgg	chr5:137688299-137688597(+)$1	298	143	183	12.7912
UGGUUGACCCAAAGGAUUCCCUGUUGUGUUUUGAGAAUUA	chr17:29632338-29632613(+)$1	275	112	152	12.8638
CGAACGUGUGUCUGAGGAGGAUGAUUCUUUGAAAGUGCUU	chr7:104752407-104752657(-)$1	250	189	229	12.4097
CUUUCUUGGACUUCCUGUGGCACAACAUGAAGCUCCCUGU	chr16:2028578-2028786(+)$1	208	16	56	14.8479
GGGGAAACGAUCCCAGUGUCGGUUGCGGGAUCCGCCUCCU	chr1:155657981-155658195(-)$1	214	105	145	11.3661
UGGUUGACCCAAAGGAUUCCCUGUUGUGUUUUGAGAAUUA	chr17:29632440-29632688(+)$1	248	10	50	12.8638
GCCCAGAAGCCAAAACACUGGAAGGUGGCGGCGGAGGGGG	chr7:104753296-104753543(-)$1	247	149	189	13.1261
GUUCGGUAUCACUGCAGUACUCGUGUAAGAGUGAGGACUC	chr3:99567695-99567949(+)$1	254	10	50	13.8425
CUGUUGGUUCUGGGGAGCGUCCCUGCUCAGGAGAGCUAGC	chr3:99567346-99567589(+)$1	243	103	143	15.7221
AGCGGAGCUGUGUUCAUUCCAUUCUUUCUUCACAGGGGCU	chr19:2199725-2199994(+)$1	269	56	96	12.7579
GUCAUGGAGGAGAUCCGGCGGCAGGGCAAGCUGUGCGACG	chr3:47324376-47324602(+)$1	226	157	197	14.2487
GUGGCACCAAACGUUGUUUCCUUUGUUCGAUAUUGUUUGG	chr17:29622331-29622589(+)$1	258	68	108	11.8517
UCAGAAGUAAUCUGUUGCUGGCGGAGUUGGGCAGAAUGGU	chr7:6071032-6071277(-)$1	245	60	100	11.9107
AAUGUUCCAGAAGUUGCCUGCUGAGUAUUGGCUGGAAGGU	chr7:104752495-104752757(-)$1	262	1	41	12.9139

#DB
(((.(..((((((..((.........))...))))))...	chr7:6075005-6075275(-)$1	1	62	102	14.5835
(((.((((((..(.((((....).))).)..)))))).))	chr7:104752577-104752880(-)$1	1	124	164	12.9139
.((((((((((......))))))))))..))))).)))))	chr12:72255091-72255351(+)$1	1	148	188	11.7091
(((((((..(((((((.(((...)))...)))))))...)	chr3:99549283-99549558(+)$1	1	83	123	13.2160
((((((((.((((.((((......)))))))...).))))	chr1:225597989-225598219(-)$1	1	93	133	15.2140
(((((((.(((((................))))).)))))	chr17:29631605-29631859(+)$1	1	112	152	11.4248
...(((((.(.(((((((......)))))))..).)).))	chr7:104753068-104753344(-)$1	1	32	72	12.4778
)...(((.(((((..(((......)))..))))).)))((	chr17:29632117-29632359(+)$1	1	137	177	13.9356
((((((((((..(.............)..)))))))))).	chrX:41193696-41193954(+)$1	1	152	192	16.1976
(((((((((((..((((...))))....))))))))))).	chr17:29632043-29632288(+)$1	1	0	40	12.0217
((((((((((((...(((......)))...))).......	chr6:170844171-170844435(-)$1	1	172	212	16.0773
(((.(..((((((..((.........))...))))))...	chr7:6075119-6075377(-)$1	1	164	204	14.5835
))))(((((((((..((((...))))....))))))))))	chr17:29631938-29632178(+)$1	1	103	143	11.9057
(((.(((.(((((..(((......)))..))))).))).)	chr17:29632159-29632448(+)$1	1	95	135	17.6780
(((.((....(((((.............)))))....)).	chr21:46281077-46281311(-)$1	1	57	97	12.5498
.((((..(((((((((((......))).).))))))).))	chr7:6071077-6071356(-)$1	1	90	130	15.0512
.(..((.(((.(((..((.(...).))..))).)))))..	chr5:137688299-137688597(+)$1	1	143	183	12.7912
(((((((.((((((.((........)).))))).)..)))	chr17:29632338-29632613(+)$1	1	112	152	12.8638
(((.((....((.(((((......))))).))...)).))	chr7:104752407-104752657(-)$1	1	189	229	12.4097
....(..(((((((.(((......))).)))).)))..).	chr16:2028578-2028786(+)$1	1	16	56	14.8479
(((((..(((((((.(((.....)))))))).))..))))	chr1:155657981-155658195(-)$1	1	105	145	11.3661
(((((((.((((((.((........)).))))).)..)))	chr17:29632440-29632688(+)$1	1	10	50	12.8638
.(((....(((....((((....))))..)))...))).)	chr7:104753296-104753543(-)$1	1	149	189	13.1261
(...(((.(((((....(((....)))..)))))..))).	chr3:99567695-99567949(+)$1	1	10	50	13.8425
(.(((((((((...((((......))))...)))))))))	chr3:99567346-99567589(+)$1	1	103	143	15.7221
(((....(((((..................)))))..)))	chr19:2199725-2199994(+)$1	1	56	96	12.7579
((((((..(.(.(.(..((......))..).).).)..))	chr3:47324376-47324602(+)$1	1	157	197	14.2487
(((((.(((((((.((((..........)))).)))))))	chr17:29622331-29622589(+)$1	1	68	108	11.8517
(((..(.((.(((((((((.....)))..)))))).)).)	chr7:6071032-6071277(-)$1	1	60	100	11.9107
(((.((((((..(.((((....).))).)..)))))).))	chr7:104752495-104752757(-)$1	1	1	41	12.9139

#PSSM
c : 0.33	= : 0.19	g : 0.13	! : 0.06	# : 0.06	[ : 0.06	a : 0.03	i : 0.03	d : 0.03	f : 0.03	
c : 0.30	= : 0.23	g : 0.10	f : 0.06	# : 0.06	d : 0.06	: : 0.03	i : 0.03	a : 0.03	" : 0.03	[ : 0.03	
c : 0.30	= : 0.23	g : 0.10	f : 0.06	# : 0.06	i : 0.06	d : 0.06	: : 0.03	! : 0.03	" : 0.03	
[ : 0.23	= : 0.23	f : 0.06	g : 0.06	c : 0.06	i : 0.06	d : 0.06	! : 0.06	# : 0.06	: : 0.03	" : 0.03	
= : 0.23	f : 0.13	c : 0.13	a : 0.10	i : 0.10	b : 0.10	g : 0.06	# : 0.06	d : 0.03	! : 0.03	
= : 0.19	! : 0.16	f : 0.13	c : 0.13	i : 0.10	b : 0.10	# : 0.06	g : 0.03	[ : 0.03	a : 0.03	
! : 0.19	= : 0.19	# : 0.13	f : 0.10	c : 0.10	i : 0.10	g : 0.06	[ : 0.06	b : 0.03	
[ : 0.19	f : 0.13	= : 0.13	b : 0.10	i : 0.10	# : 0.10	! : 0.06	g : 0.06	c : 0.06	e : 0.03	
e : 0.16	f : 0.13	= : 0.10	i : 0.10	c : 0.10	a : 0.10	[ : 0.06	# : 0.06	g : 0.06	b : 0.06	! : 0.03	
e : 0.26	f : 0.13	c : 0.13	= : 0.10	g : 0.10	a : 0.06	i : 0.06	# : 0.06	[ : 0.06	
e : 0.30	f : 0.10	! : 0.10	g : 0.10	c : 0.10	= : 0.06	[ : 0.06	i : 0.06	b : 0.03	d : 0.03	a : 0.03	
e : 0.30	! : 0.13	g : 0.13	f : 0.10	c : 0.10	o : 0.03	i : 0.03	b : 0.03	d : 0.03	# : 0.03	" : 0.03	[ : 0.03	
e : 0.26	a : 0.13	g : 0.13	f : 0.10	c : 0.06	" : 0.06	o : 0.03	! : 0.03	i : 0.03	[ : 0.03	d : 0.03	# : 0.03	^ : 0.03	
! : 0.16	[ : 0.16	e : 0.16	g : 0.10	d : 0.06	" : 0.06	# : 0.06	o : 0.03	y : 0.03	v : 0.03	c : 0.03	^ : 0.03	f : 0.03	
! : 0.19	d : 0.13	[ : 0.13	c : 0.06	g : 0.06	e : 0.06	a : 0.06	# : 0.06	o : 0.03	y : 0.03	v : 0.03	" : 0.03	^ : 0.03	f : 0.03	
c : 0.26	d : 0.19	b : 0.13	g : 0.06	v : 0.06	! : 0.06	o : 0.03	y : 0.03	e : 0.03	# : 0.03	^ : 0.03	f : 0.03	
c : 0.30	d : 0.19	b : 0.16	v : 0.06	o : 0.03	[ : 0.03	y : 0.03	g : 0.03	e : 0.03	# : 0.03	^ : 0.03	! : 0.03	
c : 0.30	d : 0.16	r : 0.06	a : 0.06	v : 0.06	b : 0.06	q : 0.06	= : 0.03	y : 0.03	g : 0.03	l : 0.03	e : 0.03	^ : 0.03	
o : 0.30	c : 0.10	r : 0.06	m : 0.06	v : 0.06	d : 0.06	q : 0.06	= : 0.03	y : 0.03	l : 0.03	[ : 0.03	n : 0.03	^ : 0.03	b : 0.03	s : 0.03	
o : 0.33	m : 0.10	r : 0.06	c : 0.06	v : 0.06	l : 0.06	q : 0.06	n : 0.06	= : 0.03	y : 0.03	a : 0.03	^ : 0.03	s : 0.03	
o : 0.33	m : 0.13	l : 0.10	r : 0.06	v : 0.06	q : 0.06	n : 0.06	= : 0.03	y : 0.03	d : 0.03	^ : 0.03	s : 0.03	
o : 0.33	m : 0.13	l : 0.10	r : 0.06	v : 0.06	q : 0.06	n : 0.06	= : 0.03	y : 0.03	d : 0.03	^ : 0.03	s : 0.03	
o : 0.33	r : 0.06	a : 0.06	l : 0.06	v : 0.06	d : 0.06	q : 0.06	n : 0.06	m : 0.06	= : 0.03	y : 0.03	^ : 0.03	s : 0.03	
o : 0.33	d : 0.10	r : 0.06	] : 0.06	c : 0.06	v : 0.06	q : 0.06	= : 0.03	y : 0.03	a : 0.03	m : 0.03	^ : 0.03	s : 0.03	n : 0.03	
c : 0.36	d : 0.13	r : 0.06	v : 0.06	q : 0.06	= : 0.03	y : 0.03	g : 0.03	4 : 0.03	] : 0.03	e : 0.03	^ : 0.03	o : 0.03	s : 0.03	
c : 0.36	d : 0.13	b : 0.13	r : 0.06	v : 0.06	= : 0.03	y : 0.03	g : 0.03	4 : 0.03	e : 0.03	^ : 0.03	s : 0.03	
c : 0.30	b : 0.19	d : 0.10	4 : 0.06	e : 0.06	= : 0.03	3 : 0.03	y : 0.03	g : 0.03	a : 0.03	v : 0.03	^ : 0.03	s : 0.03	
2 : 0.30	] : 0.19	b : 0.06	3 : 0.06	d : 0.06	4 : 0.06	e : 0.06	y : 0.03	g : 0.03	v : 0.03	^ : 0.03	s : 0.03	
2 : 0.30	3 : 0.16	e : 0.16	a : 0.10	d : 0.06	c : 0.03	y : 0.03	g : 0.03	= : 0.03	4 : 0.03	^ : 0.03	
e : 0.30	3 : 0.13	c : 0.10	2 : 0.06	g : 0.06	= : 0.06	] : 0.06	d : 0.06	4 : 0.03	^ : 0.03	a : 0.03	f : 0.03	
e : 0.33	c : 0.13	3 : 0.10	g : 0.10	2 : 0.06	= : 0.06	d : 0.06	i : 0.03	b : 0.03	] : 0.03	f : 0.03	
e : 0.30	f : 0.16	c : 0.10	g : 0.06	= : 0.06	i : 0.06	d : 0.06	3 : 0.03	2 : 0.03	b : 0.03	] : 0.03	a : 0.03	
e : 0.30	f : 0.16	] : 0.13	3 : 0.10	g : 0.06	= : 0.06	i : 0.06	2 : 0.03	c : 0.03	b : 0.03	
e : 0.19	f : 0.16	g : 0.10	3 : 0.10	a : 0.06	= : 0.06	i : 0.06	c : 0.06	] : 0.06	> : 0.03	4 : 0.03	b : 0.03	
] : 0.19	f : 0.16	g : 0.10	a : 0.10	= : 0.06	i : 0.06	c : 0.06	3 : 0.06	2 : 0.06	> : 0.03	4 : 0.03	e : 0.03	
c : 0.19	2 : 0.16	f : 0.13	g : 0.13	] : 0.06	b : 0.06	= : 0.06	i : 0.06	> : 0.03	4 : 0.03	a : 0.03	
c : 0.16	2 : 0.16	f : 0.13	g : 0.13	b : 0.13	= : 0.10	i : 0.06	3 : 0.03	> : 0.03	4 : 0.03	
c : 0.19	] : 0.16	= : 0.16	g : 0.10	b : 0.10	4 : 0.06	i : 0.06	2 : 0.06	3 : 0.03	> : 0.03	
c : 0.23	= : 0.16	g : 0.10	] : 0.10	4 : 0.06	b : 0.06	i : 0.06	3 : 0.03	> : 0.03	d : 0.03	2 : 0.03	a : 0.03	f : 0.03	
c : 0.23	= : 0.10	g : 0.10	2 : 0.10	4 : 0.06	b : 0.06	f : 0.06	3 : 0.06	: : 0.03	> : 0.03	C : 0.03	d : 0.03	i : 0.03	a : 0.03	

#score	405.0573020470865
#seq	30
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_transcript_m3_run1.txt

#BEAR
gggggg[cccqqqqqqqqccc]gggggg	chr1:235291043-235291248(-)$1	205	82	110	17.6726
eeeeeeeeeeqqqqqqqqeeeee333ee	chr11:93466607-93466811(-)$1	204	62	90	16.6586
:cccdddd[aqqqqqqqqa]dddd]ccc	chr21:44269326-44269541(-)$1	215	84	112	15.2470
eeeee"""bbqqqqqqqqbb333eeeee	chr11:46783914-46784127(-)$1	213	146	174	15.9402
#eeeeeddddqqqqqqqqdddd22eeee	chr17:74557658-74557875(+)$1	217	78	106	15.9598
ddd[ffffffqqqqqqqqffffff]ddd	chr14:103804081-103804325(+)$1	244	116	144	15.3492
[ccc[eeeeeqqqqqqqqeeeee22ccc	chr1:48692833-48693065(+)$1	232	6	34	17.0809
:iiiiiiiiiqqqqqqqqiiiiiiiiic	chr6:160201237-160201443(-)$1	206	143	171	17.4350
eeee####bbqqqqqqqqbb333eeeee	chrX:54840702-54840928(+)$1	226	5	33	15.9440
======ddddqqqqqqqqdddd4444==	chr11:93464123-93464327(-)$1	204	15	43	18.2961
iiiiiii[bbqqqqqqqqbb]iiiiiii	chr17:65736691-65736921(+)$1	230	108	136	18.3177
eeeeeeeeeeqqqqqqqqeeeee333ee	chr11:93466594-93466796(-)$1	202	47	75	16.6586
[ddddeeeeeqqqqqqqqeeeee]dddd	chr9:139621172-139621375(-)$1	203	128	156	15.6323
:iiiiiiiiiqqqqqqqqiiiiiiiii:	chr6:160201262-160201464(-)$1	202	164	192	16.5403
!a!!ffffffqqqqqqqqffffff22a2	chr1:28833929-28834133(+)$1	204	151	179	15.8768
========[aqqqqqqqqa]========	chr19:7153132-7153471(-)$1	339	54	82	18.8316
ccc[ffffffqqqqqqqqffffff]ccc	chr3:171809571-171809856(+)$1	285	193	221	16.4430
dddd!!ddddqqqqqqqqdddd333ddd	chr14:103804202-103804407(+)$1	205	61	89	16.6049
ccc[ffffffqqqqqqqqffffff333c	chr17:7478009-7478212(+)$1	203	38	66	16.6022
ccc[bb!!bbqqqqqqqqbb22bbccc:	chr15:25320976-25321239(+)$1	263	149	177	14.9001
ccc[ffffffqqqqqqqqffffff]ccc	chr8:99054212-99054458(-)$1	246	94	122	16.4430
cccc[eeeeeqqqqqqqqeeeee]ccc]	chr12:120730914-120731131(-)$1	217	177	205	17.1361
fffff[ddddqqqqqqqqddddffffff	chr12:132515717-132515927(+)$1	210	138	166	15.9515
4444bbddddqqqqqqqqddddhhhhhh	chr17:80675717-80675986(+)$1	269	114	142	14.7530
==========qqqqqqqq==========	chr19:2336913-2337179(+)$1	266	41	69	19.2102
:iiiiiiiiiqqqqqqqqiiiiiiiii:	chr13:114267906-114268195(+)$1	289	80	108	16.5403
hhhhhh!!bbqqqqqqqqbb4444hhhh	chr3:52724679-52724935(+)$1	256	18	46	15.5599
$$$eeeeebbqqqqqqqqbb]eeeee33	chr16:2012320-2012525(-)$1	205	110	138	15.5598
[ggggggg[aqqqqqqqqa]ggggggga	chr20:62363523-62363791(+)$1	268	95	123	17.3708
==========qqqqqqqq==========	chr2:135894095-135894314(+)$1	219	181	209	19.2102
ccc[bb[cccqqqqqqqqccc]bb22cc	chr12:6619544-6619754(+)$1	210	137	165	16.3732
iiiiiii[bbqqqqqqqqbb]iiiiiii	chr17:65736783-65736994(+)$1	211	16	44	18.3177
:a[bb[ddddqqqqqqqqdddd]bb]a:	chr14:69365650-69365943(-)$1	293	264	292	14.2575
eeeee!!cccqqqqqqqqccceeeee::	chr20:43033495-43033718(+)$1	223	20	48	14.3486
======ddddqqqqqqqqdddd4444==	chr11:93464161-93464366(-)$1	205	54	82	18.2961
iiiiiii[bbqqqqqqqqbb]iiiiiii	chr17:65736736-65736949(+)$1	213	63	91	18.3177
[bb!!eeeeeqqqqqqqqeeeee22bb]	chr7:98479396-98479607(+)$1	211	9	37	16.1677
ggg!!eeeeeqqqqqqqqeeeee22ggg	chrX:154003229-154003436(+)$1	207	60	88	17.4285
fff"""ddddqqqqqqqqddddffffff	chr5:172447704-172447907(+)$1	203	43	71	16.3509
!iiiiiiiiiqqqqqqqqiiiiiiiii2	chr5:138611809-138612012(+)$1	203	74	102	18.3322
iiiiiii[bbqqqqqqqqbb]iiiiiii	chr17:65736768-65736972(+)$1	204	31	59	18.3177
ggg"""ddddqqqqqqqqdddd]ggggg	chr1:76253551-76253757(+)$1	206	160	188	17.7940
cccc[eeeeeqqqqqqqqeeeee]ccc2	chr13:114192395-114192745(+)$1	350	284	312	16.9556
####bb[cccqqqqqqqqccc]bbeeee	chr1:89260093-89260312(+)$1	219	88	116	15.6844
==========qqqqqqqq==========	chr17:62223673-62223880(+)$1	207	109	137	19.2102
iiiiiii[bbqqqqqqqqbb]iiiiiii	chr6:31590755-31590960(+)$1	205	115	143	18.3177
fff"""ddddqqqqqqqqddddffffff	chr5:172447629-172447833(+)$1	204	118	146	16.3509
==========qqqqqqqq==========	chr11:93468229-93468452(-)$1	223	127	155	19.2102
a[a[a[ddddqqqqqqqqdddd]a333a	chr1:109642930-109643133(+)$1	203	19	47	17.6452
gggggg[cccqqqqqqqqccc]gggggg	chr1:235291066-235291275(-)$1	209	109	137	17.6726
ccc[ffffffqqqqqqqqffffff]ccc	chr8:99054258-99054471(-)$1	213	107	135	16.4430
==========qqqqqqqq==========	chr3:183169554-183169780(+)$1	226	107	135	19.2102
iiiiiiddddqqqqqqqqdddd333iii	chr16:50657544-50657814(+)$1	270	49	77	18.5895
fffffeeeeeqqqqqqqqeeeee]ffff	chr5:111497099-111497321(+)$1	222	133	161	15.8964
ggg####cccqqqqqqqqccc4444ggg	chr14:20791293-20791496(-)$1	203	168	196	17.6140
ggg[bb!!bbqqqqqqqqbb]bb]gggg	chr1:40033020-40033224(-)$1	204	60	88	16.7271
iiddddddddqqqqqqqqdddd]dddd>	chr11:17097305-17097515(-)$1	210	35	63	15.5674
bb[cccddddqqqqqqqqdddd]ccc22	chr1:93306266-93306469(+)$1	203	24	52	16.0321

#otherMatches

#Seq PSSM
GGGCUGCGCUUCUCCCGUGGCUCAGUCU	chr1:235291043-235291248(-)$1	205	82	110	17.6726
CGAUGGGGCUUUUCCUGUAGCCUGCACA	chr11:93466607-93466811(-)$1	204	62	90	16.6586
ACCUUGGCACACACUGCAGAGCCACAGG	chr21:44269326-44269541(-)$1	215	84	112	15.2470
CCCUGGUGACAAAAUCAAGUGCACAGGG	chr11:46783914-46784127(-)$1	213	146	174	15.9402
AUCCCUGUCUGAAAAUCUGGACUGAGGG	chr17:74557658-74557875(+)$1	217	78	106	15.9598
GUGGCAGAUGAUCAAAACUGUCUGACAC	chr14:103804081-103804325(+)$1	244	116	144	15.3492
ugugugugcguguguguguguacugugc	chr1:48692833-48693065(+)$1	232	6	34	17.0809
CUGCAGGGACUAGACAUUGUUUCUGUAU	chr6:160201237-160201443(-)$1	206	143	171	17.4350
CUGCUAUUGGCUGUUCUUCCUCUGUAGU	chrX:54840702-54840928(+)$1	226	5	33	15.9440
AGUAAUGGUUUUUAUCUUAACUAUAAGU	chr11:93464123-93464327(-)$1	204	15	43	18.2961
AUGUCUAUAGUUCCUUGUCUUUGGACAU	chr17:65736691-65736921(+)$1	230	108	136	18.3177
CGAUGGGGCUUUUCCUGUAGCCUGCACA	chr11:93466594-93466796(-)$1	202	47	75	16.6586
CUCAGCGUUCUGCCCCGUGAACGUUUGA	chr9:139621172-139621375(-)$1	203	128	156	15.6323
CUGCAGGGACUAGACAUUGUUUCUGUAU	chr6:160201262-160201464(-)$1	202	164	192	16.5403
gccUUCUAGAGCACUGAAUCUGGAUUGA	chr1:28833929-28834133(+)$1	204	151	179	15.8768
uguaugugguguguguguggugcgugua	chr19:7153132-7153471(-)$1	339	54	82	18.8316
AAAUUUGACUAUAAGAUGAGUCAGUUUU	chr3:171809571-171809856(+)$1	285	193	221	16.4430
CGGUGUUCUCUCUCCCAUGAGACAAGCC	chr14:103804202-103804407(+)$1	205	61	89	16.6049
GAGUGGCAUCUGGUUGGUGAUGCCCAUC	chr17:7478009-7478212(+)$1	203	38	66	16.6022
GAGUGAAAACUUUAUACUGUCAUCCUCU	chr15:25320976-25321239(+)$1	263	149	177	14.9001
CCAAACCUAGUUCUUUCCCUAGGUCUGG	chr8:99054212-99054458(-)$1	246	94	122	16.4430
cgugacgacuugcaauauagucggcacu	chr12:120730914-120731131(-)$1	217	177	205	17.1361
CCCAGUAAGACGCUGUUUUCUUUUGGGG	chr12:132515717-132515927(+)$1	210	138	166	15.9515
UGGAGCCCCAGGUGAGGAUGGGAGAGUG	chr17:80675717-80675986(+)$1	269	114	142	14.7530
ggacgugugcuugugugugcgcguguuc	chr19:2336913-2337179(+)$1	266	41	69	19.2102
ugugugcaugaguguguguguguaugcg	chr13:114267906-114268195(+)$1	289	80	108	16.5403
AGGAUAAAGGGAAGAUAACCAAGGUAUC	chr3:52724679-52724935(+)$1	256	18	46	15.5599
UCAGGGAGGCAGAGAAAGGCUCUCCUAA	chr16:2012320-2012525(-)$1	205	110	138	15.5598
UCGCAugugugugggugagggcgugugu	chr20:62363523-62363791(+)$1	268	95	123	17.3708
CAGAACUCAUUGUUCAGUAUGAGUUUUG	chr2:135894095-135894314(+)$1	219	181	209	19.2102
AGAGAUGAAACACAGAUCUUUGGUAAUC	chr12:6619544-6619754(+)$1	210	137	165	16.3732
AUGUCUAUAGUUCCUUGUCUUUGGACAU	chr17:65736783-65736994(+)$1	211	16	44	18.3177
guguggagugaaggggagugcugugggu	chr14:69365650-69365943(-)$1	293	264	292	14.2575
acugcuuggugugugugaacuguggugu	chr20:43033495-43033718(+)$1	223	20	48	14.3486
AGUAAUGGUUUUUAUCUUAACUAUAAGU	chr11:93464161-93464366(-)$1	205	54	82	18.2961
AUGUCUAUAGUUCCUUGUCUUUGGACAU	chr17:65736736-65736949(+)$1	213	63	91	18.3177
GCACGUGUAUGUCUGGGAGUACAAAUGG	chr7:98479396-98479607(+)$1	211	9	37	16.1677
UUUCUAGUCUGGCUCGUGGGACUCUAGA	chrX:154003229-154003436(+)$1	207	60	88	17.4285
AUCCGGACAGAACCGUUCCUGUGAUGGU	chr5:172447704-172447907(+)$1	203	43	71	16.3509
CUGCCUAGGUUGUCUUGUACCUAGGCAA	chr5:138611809-138612012(+)$1	203	74	102	18.3322
AUGUCUAUAGUUCCUUGUCUUUGGACAU	chr17:65736768-65736972(+)$1	204	31	59	18.3177
AGCAAAAAGUAGUAAACAACUUAGUUAA	chr1:76253551-76253757(+)$1	206	160	188	17.7940
AGCUUGAUCUCCGUGUUUGGGuccagcu	chr13:114192395-114192745(+)$1	350	284	312	16.9556
gagacugaggcaagauuacuugagccca	chr1:89260093-89260312(+)$1	219	88	116	15.6844
GGGCCGCCUGGCCUCCCGCGGGCGGCCU	chr17:62223673-62223880(+)$1	207	109	137	19.2102
GUGUCUGUGGUUCCCUGUCUUUGGACAC	chr6:31590755-31590960(+)$1	205	115	143	18.3177
AUCCGGACAGAACCGUUCCUGUGAUGGU	chr5:172447629-172447833(+)$1	204	118	146	16.3509
CAGAACUCAUUGUUCAGUAUGAGUUUUG	chr11:93468229-93468452(-)$1	223	127	155	19.2102
GUGCGUGCGCCCACCCCUGCGCCCCUCC	chr1:109642930-109643133(+)$1	203	19	47	17.6452
GGGCUGCGCUUCUCCCGUGGCUCAGUCU	chr1:235291066-235291275(-)$1	209	109	137	17.6726
CCAAACCUAGUUCUUUCCCUAGGUCUGG	chr8:99054258-99054471(-)$1	213	107	135	16.4430
ACAAUAUAGCUGUGAAGUGCUAUGUUGU	chr3:183169554-183169780(+)$1	226	107	135	19.2102
UUCUGAAGCUCAGACCCAAGCUGUCUUG	chr16:50657544-50657814(+)$1	270	49	77	18.5895
AAGGCGUAAAUUAAACGCUUUGCAGCCU	chr5:111497099-111497321(+)$1	222	133	161	15.8964
GUGGUGAUUCCAGAUUAAGAAAAUGUAC	chr14:20791293-20791496(-)$1	203	168	196	17.6140
CAUUCCUUGCUGCCUCGUGCCGGUGUGG	chr1:40033020-40033224(-)$1	204	60	88	16.7271
aguucucaguaaauguuagcuGUGGAAU	chr11:17097305-17097515(-)$1	210	35	63	15.5674
CUAGCUCUGCGUGAUGUGGCAGAAGCGA	chr1:93306266-93306469(+)$1	203	24	52	16.0321

#DB
((((((.(((........))).))))))	chr1:235291043-235291248(-)$1	1	82	110	17.6726
((((((((((........)))))...))	chr11:93466607-93466811(-)$1	1	62	90	16.6586
.(((((((.(........).)))).)))	chr21:44269326-44269541(-)$1	1	84	112	15.2470
(((((...((........))...)))))	chr11:46783914-46784127(-)$1	1	146	174	15.9402
.(((((((((........))))..))))	chr17:74557658-74557875(+)$1	1	78	106	15.9598
(((.((((((........)))))).)))	chr14:103804081-103804325(+)$1	1	116	144	15.3492
.(((.(((((........)))))..)))	chr1:48692833-48693065(+)$1	1	6	34	17.0809
.(((((((((........)))))))))(	chr6:160201237-160201443(-)$1	1	143	171	17.4350
((((....((........))...)))))	chrX:54840702-54840928(+)$1	1	5	33	15.9440
((((((((((........))))....))	chr11:93464123-93464327(-)$1	1	15	43	18.2961
(((((((.((........)).)))))))	chr17:65736691-65736921(+)$1	1	108	136	18.3177
((((((((((........)))))...))	chr11:93466594-93466796(-)$1	1	47	75	16.6586
.(((((((((........))))).))))	chr9:139621172-139621375(-)$1	1	128	156	15.6323
.(((((((((........))))))))).	chr6:160201262-160201464(-)$1	1	164	192	16.5403
.(..((((((........))))))..).	chr1:28833929-28834133(+)$1	1	151	179	15.8768
((((((((.(........).))))))))	chr19:7153132-7153471(-)$1	1	54	82	18.8316
(((.((((((........)))))).)))	chr3:171809571-171809856(+)$1	1	193	221	16.4430
((((..((((........))))...)))	chr14:103804202-103804407(+)$1	1	61	89	16.6049
(((.((((((........))))))...)	chr17:7478009-7478212(+)$1	1	38	66	16.6022
(((.((..((........))..))))).	chr15:25320976-25321239(+)$1	1	149	177	14.9001
(((.((((((........)))))).)))	chr8:99054212-99054458(-)$1	1	94	122	16.4430
((((.(((((........))))).))).	chr12:120730914-120731131(-)$1	1	177	205	17.1361
(((((.((((........))))))))))	chr12:132515717-132515927(+)$1	1	138	166	15.9515
....))((((........))))((((((	chr17:80675717-80675986(+)$1	1	114	142	14.7530
((((((((((........))))))))))	chr19:2336913-2337179(+)$1	1	41	69	19.2102
.(((((((((........))))))))).	chr13:114267906-114268195(+)$1	1	80	108	16.5403
((((((..((........))....))))	chr3:52724679-52724935(+)$1	1	18	46	15.5599
...(((((((........)).)))))..	chr16:2012320-2012525(-)$1	1	110	138	15.5598
.(((((((.(........).))))))))	chr20:62363523-62363791(+)$1	1	95	123	17.3708
((((((((((........))))))))))	chr2:135894095-135894314(+)$1	1	181	209	19.2102
(((.((.(((........))).))..))	chr12:6619544-6619754(+)$1	1	137	165	16.3732
(((((((.((........)).)))))))	chr17:65736783-65736994(+)$1	1	16	44	18.3177
.(.((.((((........)))).)).).	chr14:69365650-69365943(-)$1	1	264	292	14.2575
(((((..(((........))))))))..	chr20:43033495-43033718(+)$1	1	20	48	14.3486
((((((((((........))))....))	chr11:93464161-93464366(-)$1	1	54	82	18.2961
(((((((.((........)).)))))))	chr17:65736736-65736949(+)$1	1	63	91	18.3177
.((..(((((........)))))..)).	chr7:98479396-98479607(+)$1	1	9	37	16.1677
(((..(((((........)))))..)))	chrX:154003229-154003436(+)$1	1	60	88	17.4285
(((...((((........))))))))))	chr5:172447704-172447907(+)$1	1	43	71	16.3509
.(((((((((........))))))))).	chr5:138611809-138612012(+)$1	1	74	102	18.3322
(((((((.((........)).)))))))	chr17:65736768-65736972(+)$1	1	31	59	18.3177
(((...((((........)))).)))))	chr1:76253551-76253757(+)$1	1	160	188	17.7940
((((.(((((........))))).))).	chr13:114192395-114192745(+)$1	1	284	312	16.9556
....((.(((........))).))))))	chr1:89260093-89260312(+)$1	1	88	116	15.6844
((((((((((........))))))))))	chr17:62223673-62223880(+)$1	1	109	137	19.2102
(((((((.((........)).)))))))	chr6:31590755-31590960(+)$1	1	115	143	18.3177
(((...((((........))))))))))	chr5:172447629-172447833(+)$1	1	118	146	16.3509
((((((((((........))))))))))	chr11:93468229-93468452(-)$1	1	127	155	19.2102
(.(.(.((((........)))).)...)	chr1:109642930-109643133(+)$1	1	19	47	17.6452
((((((.(((........))).))))))	chr1:235291066-235291275(-)$1	1	109	137	17.6726
(((.((((((........)))))).)))	chr8:99054258-99054471(-)$1	1	107	135	16.4430
((((((((((........))))))))))	chr3:183169554-183169780(+)$1	1	107	135	19.2102
((((((((((........))))...)))	chr16:50657544-50657814(+)$1	1	49	77	18.5895
((((((((((........))))).))))	chr5:111497099-111497321(+)$1	1	133	161	15.8964
(((....(((........)))....)))	chr14:20791293-20791496(-)$1	1	168	196	17.6140
(((.((..((........)).)).))))	chr1:40033020-40033224(-)$1	1	60	88	16.7271
((((((((((........)))).)))).	chr11:17097305-17097515(-)$1	1	35	63	15.5674
((.(((((((........)))).)))..	chr1:93306266-93306469(+)$1	1	24	52	16.0321

#PSSM
= : 0.13	c : 0.13	i : 0.12	g : 0.10	e : 0.08	: : 0.08	[ : 0.06	f : 0.06	# : 0.03	d : 0.03	! : 0.03	4 : 0.01	h : 0.01	$ : 0.01	a : 0.01	b : 0.01	
i : 0.18	c : 0.17	= : 0.13	g : 0.12	e : 0.10	f : 0.06	d : 0.05	a : 0.03	b : 0.03	4 : 0.01	h : 0.01	$ : 0.01	# : 0.01	[ : 0.01	
c : 0.17	i : 0.17	= : 0.13	g : 0.12	e : 0.10	d : 0.06	f : 0.06	[ : 0.03	! : 0.01	4 : 0.01	h : 0.01	$ : 0.01	b : 0.01	# : 0.01	a : 0.01	
i : 0.17	[ : 0.15	= : 0.13	e : 0.12	c : 0.08	g : 0.05	d : 0.05	! : 0.05	" : 0.05	f : 0.03	# : 0.03	4 : 0.01	h : 0.01	b : 0.01	
i : 0.17	f : 0.13	= : 0.13	e : 0.10	b : 0.10	g : 0.05	d : 0.05	[ : 0.05	! : 0.05	" : 0.05	# : 0.03	h : 0.01	a : 0.01	c : 0.01	
e : 0.18	i : 0.17	= : 0.13	f : 0.10	b : 0.08	" : 0.06	g : 0.05	[ : 0.05	d : 0.03	# : 0.03	! : 0.03	h : 0.01	c : 0.01	
d : 0.25	e : 0.17	i : 0.15	f : 0.10	= : 0.10	[ : 0.06	! : 0.06	# : 0.03	" : 0.01	g : 0.01	
d : 0.25	e : 0.17	c : 0.10	f : 0.10	= : 0.10	[ : 0.08	i : 0.06	! : 0.05	" : 0.01	# : 0.01	g : 0.01	
d : 0.24	b : 0.18	e : 0.15	c : 0.10	f : 0.10	= : 0.08	i : 0.06	[ : 0.05	
d : 0.24	b : 0.18	e : 0.15	c : 0.10	f : 0.10	= : 0.08	i : 0.06	a : 0.05	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.24	b : 0.18	e : 0.15	c : 0.10	f : 0.10	= : 0.08	i : 0.06	a : 0.05	
d : 0.24	b : 0.18	e : 0.15	c : 0.10	f : 0.10	= : 0.08	i : 0.06	] : 0.05	
d : 0.25	e : 0.15	] : 0.12	c : 0.10	f : 0.10	= : 0.10	i : 0.06	3 : 0.03	2 : 0.01	4 : 0.01	g : 0.01	
d : 0.25	e : 0.18	i : 0.15	f : 0.10	= : 0.10	] : 0.06	3 : 0.03	4 : 0.03	2 : 0.01	g : 0.01	b : 0.01	
e : 0.18	f : 0.15	i : 0.15	= : 0.10	] : 0.08	3 : 0.06	4 : 0.06	b : 0.06	g : 0.05	d : 0.01	2 : 0.01	h : 0.01	
f : 0.15	i : 0.15	= : 0.10	] : 0.08	g : 0.06	3 : 0.06	e : 0.06	2 : 0.06	4 : 0.06	b : 0.06	d : 0.03	h : 0.01	a : 0.01	c : 0.01	
i : 0.15	3 : 0.10	e : 0.10	= : 0.10	g : 0.08	] : 0.08	2 : 0.08	c : 0.06	f : 0.06	4 : 0.05	d : 0.03	h : 0.03	b : 0.01	
i : 0.17	c : 0.15	g : 0.12	e : 0.10	= : 0.10	3 : 0.06	d : 0.06	f : 0.06	4 : 0.03	2 : 0.03	h : 0.03	] : 0.01	b : 0.01	
i : 0.17	c : 0.15	= : 0.13	g : 0.12	e : 0.10	d : 0.06	f : 0.06	3 : 0.05	a : 0.03	h : 0.03	: : 0.01	b : 0.01	2 : 0.01	
c : 0.13	= : 0.13	g : 0.10	e : 0.10	i : 0.10	: : 0.08	2 : 0.06	f : 0.06	d : 0.05	] : 0.03	h : 0.03	a : 0.03	3 : 0.01	> : 0.01	

#score	981.1569184533639
#seq	58
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_CDS_m2_run2.txt

#BEAR
Hiiiiiiiiimmmmiiiiiiiii::	chr1:27320446-27320740(+)$1	294	43	68	9.0191
Ciiiiiiiiiooooooiiiiiiiii	chr16:597128-597377(+)$1	249	205	230	9.2319
=======[bbmmmmbb]========	chr11:637269-637528(+)$1	259	147	172	11.9112
fff[a[ddddllldddd]a]fffff	chr19:1467299-1467542(-)$1	243	13	38	7.9399
iiiiiiiii[annnnna]iiiiiii	chr16:2029100-2029389(+)$1	289	257	282	9.2750
==========mmmm==========]	chr9:140347363-140347614(-)$1	251	197	222	12.5915
ffffff[cccmmmmccc]ffffffd	chr20:32251179-32251458(-)$1	279	58	83	10.0141
========ccclllccc333=====	chr17:74379795-74380027(+)$1	232	89	114	11.8352
"""ccc[a!!ammmma22a]ccc22	chr8:30669833-30670093(-)$1	260	51	76	9.7655
iiiiiiicccmmmmccc333iiiii	chr1:27320165-27320415(+)$1	250	117	142	12.3923
ebb[ccc[ccclllccc]ccc]bb7	chr17:74381116-74381378(+)$1	262	220	245	8.6476
"""a[a[bboooooobb]a]a333d	chr1:36788412-36788683(+)$1	271	107	132	9.5225
ggggdddd[ammmma]dddd]gggg	chr1:234614071-234614338(-)$1	267	50	75	8.7798
ggg[dddda[ammmma22a]dddd]	chr2:232575101-232575353(+)$1	252	48	73	8.9832
gggg"""cccmmmmcccggggggg:	chr11:65325159-65325437(-)$1	278	231	256	10.4950
e[ccc!!cccmmmmccc]ccc22ee	chr3:98451615-98451834(+)$1	219	155	180	10.6212
b[eeeeecccmmmmccc]eeeeebb	chr10:75551929-75552212(+)$1	283	248	273	8.9427
ff[a[bb[bbmmmmbb]bb]a]fff	chr8:103424361-103424610(-)$1	249	42	67	9.1823
gggggg!!aooooooa22ggggggg	chr7:127670459-127670707(+)$1	248	218	243	10.1543
e!!ccccccnnnnnccc]ccc]eee	chr11:702875-703118(-)$1	243	168	193	8.4829
ccc[bb"""==============[f	chr5:138629655-138629972(+)$1	317	89	114	8.3862
ccc[bb[cccmmmmccc]bb]ccc:	chr12:62996807-62997118(+)$1	311	96	121	9.7895
fffffbb[bbmmmmbb]bb]fffff	chr8:145687775-145688071(-)$1	296	238	263	8.4554
=====a[cccmmmmccc]a]=====	chr7:73021386-73021655(-)$1	269	6	31	13.2517

#otherMatches

#Seq PSSM
GCGCUGGCGCCAGGGCGCUAGCGGG	chr1:27320446-27320740(+)$1	294	43	68	9.0191
UGCGGGGGCCCACGCAGGCUCUCGC	chr16:597128-597377(+)$1	249	205	230	9.2319
UGGUGGGGGGCGUGCUGCUCAUCGG	chr11:637269-637528(+)$1	259	147	172	11.9112
GUCUCGUCGCUGAGCGAGGCGGCGC	chr19:1467299-1467542(-)$1	243	13	38	7.9399
GGGCGGGGUGUGGUUAGGGCCCCGC	chr16:2029100-2029389(+)$1	289	257	282	9.2750
CCUUCUCCAGCUGCCUGGGGGAGGG	chr9:140347363-140347614(-)$1	251	197	222	12.5915
CCGUUGCCCAGCGUUGGCCAGCGGC	chr20:32251179-32251458(-)$1	279	58	83	10.0141
CCCCUUCUUCACGCUGAGCCAGAGG	chr17:74379795-74380027(+)$1	232	89	114	11.8352
ggagggagaggggagcggcgcccgg	chr8:30669833-30670093(-)$1	260	51	76	9.7655
GGGCUGCCGCAUCAGCGCCUGCGGC	chr1:27320165-27320415(+)$1	250	117	142	12.3923
CCCGGAGCAGGCGCCCUUCUCAGGG	chr17:74381116-74381378(+)$1	262	220	245	8.6476
AUGGUGGUCAGGGAAGGGUUCAGGC	chr1:36788412-36788683(+)$1	271	107	132	9.5225
GCGGCGCUGGUGGCCGGGCGACUGC	chr1:234614071-234614338(-)$1	267	50	75	8.7798
UCGGCCGCCAGGGGGCGAGAGCGGG	chr2:232575101-232575353(+)$1	252	48	73	8.9832
UCUCAAGGGCCAGUGUCGGGACAGU	chr11:65325159-65325437(-)$1	278	231	256	10.4950
CCCGGUGCGCCUCUGCGGUCGUCGC	chr3:98451615-98451834(+)$1	219	155	180	10.6212
CCUGGCCCUGGGCGCAGAGGCCAGC	chr10:75551929-75552212(+)$1	283	248	273	8.9427
CUGGGAGGCGGCGGCGGCUGUGGGU	chr8:103424361-103424610(-)$1	249	42	67	9.1823
GCCACAAGAGCUUCAUGGUGUGGCA	chr7:127670459-127670707(+)$1	248	218	243	10.1543
UGGUGCCUGGAGAACAGAGCAAAGG	chr11:702875-703118(-)$1	243	168	193	8.4829
GCCGGCCAAGGGCCCAGGGUGCGGC	chr5:138629655-138629972(+)$1	317	89	114	8.3862
GCGGCGGGUUCGACAGCGCGGCGCG	chr12:62996807-62997118(+)$1	311	96	121	9.7895
GCGGCCGGCGACCCCGACGCGCCGC	chr8:145687775-145688071(-)$1	296	238	263	8.4554
AGGGCCAGGGAGGCCCCAGAGCUUU	chr7:73021386-73021655(-)$1	269	6	31	13.2517

#DB
((((((((((....)))))))))..	chr1:27320446-27320740(+)$1	1	43	68	9.0191
)(((((((((......)))))))))	chr16:597128-597377(+)$1	1	205	230	9.2319
(((((((.((....)).))))))))	chr11:637269-637528(+)$1	1	147	172	11.9112
(((.(.((((...)))).).)))))	chr19:1467299-1467542(-)$1	1	13	38	7.9399
(((((((((.(.....).)))))))	chr16:2029100-2029389(+)$1	1	257	282	9.2750
((((((((((....)))))))))).	chr9:140347363-140347614(-)$1	1	197	222	12.5915
((((((.(((....))).)))))))	chr20:32251179-32251458(-)$1	1	58	83	10.0141
(((((((((((...)))...)))))	chr17:74379795-74380027(+)$1	1	89	114	11.8352
...(((.(..(....)..).)))..	chr8:30669833-30670093(-)$1	1	51	76	9.7655
((((((((((....)))...)))))	chr1:27320165-27320415(+)$1	1	117	142	12.3923
(((.(((.(((...))).))).)).	chr17:74381116-74381378(+)$1	1	220	245	8.6476
...(.(.((......)).).)...)	chr1:36788412-36788683(+)$1	1	107	132	9.5225
((((((((.(....).)))).))))	chr1:234614071-234614338(-)$1	1	50	75	8.7798
(((.(((((.(....)..).)))).	chr2:232575101-232575353(+)$1	1	48	73	8.9832
((((...(((....)))))))))).	chr11:65325159-65325437(-)$1	1	231	256	10.4950
(.(((..(((....))).)))..))	chr3:98451615-98451834(+)$1	1	155	180	10.6212
(.((((((((....))).)))))))	chr10:75551929-75552212(+)$1	1	248	273	8.9427
((.(.((.((....)).)).).)))	chr8:103424361-103424610(-)$1	1	42	67	9.1823
((((((..(......)..)))))))	chr7:127670459-127670707(+)$1	1	218	243	10.1543
(..((((((.....))).))).)))	chr11:702875-703118(-)$1	1	168	193	8.4829
(((.((...((((((((((((((.(	chr5:138629655-138629972(+)$1	1	89	114	8.3862
(((.((.(((....))).)).))).	chr12:62996807-62997118(+)$1	1	96	121	9.7895
(((((((.((....)).)).)))))	chr8:145687775-145688071(-)$1	1	238	263	8.4554
((((((.(((....))).).)))))	chr7:73021386-73021655(-)$1	1	6	31	13.2517

#PSSM
= : 0.16	f : 0.16	g : 0.16	e : 0.12	i : 0.08	" : 0.08	c : 0.08	H : 0.04	C : 0.04	b : 0.04	
i : 0.16	= : 0.16	f : 0.16	g : 0.16	" : 0.08	[ : 0.08	c : 0.08	b : 0.04	! : 0.04	
i : 0.16	= : 0.16	g : 0.16	f : 0.12	c : 0.12	" : 0.08	b : 0.04	e : 0.04	[ : 0.04	! : 0.04	
[ : 0.20	i : 0.16	= : 0.16	c : 0.12	g : 0.12	f : 0.08	a : 0.08	e : 0.04	
i : 0.16	= : 0.16	c : 0.16	f : 0.08	[ : 0.08	d : 0.08	b : 0.08	a : 0.04	" : 0.04	e : 0.04	g : 0.04	
i : 0.16	b : 0.16	= : 0.12	c : 0.12	a : 0.08	d : 0.08	[ : 0.04	f : 0.04	" : 0.04	! : 0.04	e : 0.04	g : 0.04	
[ : 0.20	i : 0.16	= : 0.12	d : 0.12	c : 0.08	" : 0.08	! : 0.08	b : 0.08	e : 0.04	
c : 0.33	[ : 0.16	i : 0.12	d : 0.12	= : 0.08	a : 0.04	b : 0.04	! : 0.04	" : 0.04	
c : 0.41	b : 0.16	i : 0.12	a : 0.08	d : 0.04	= : 0.04	! : 0.04	[ : 0.04	" : 0.04	
c : 0.37	b : 0.12	i : 0.08	[ : 0.08	= : 0.08	o : 0.08	d : 0.04	! : 0.04	a : 0.04	n : 0.04	
m : 0.54	o : 0.12	a : 0.12	c : 0.08	l : 0.04	n : 0.04	= : 0.04	
m : 0.62	o : 0.12	l : 0.12	n : 0.08	= : 0.04	
m : 0.62	o : 0.12	l : 0.12	n : 0.08	= : 0.04	
m : 0.62	o : 0.12	n : 0.08	l : 0.08	d : 0.04	= : 0.04	
c : 0.41	o : 0.12	b : 0.12	= : 0.08	m : 0.08	i : 0.04	d : 0.04	n : 0.04	a : 0.04	
c : 0.41	b : 0.16	a : 0.12	= : 0.08	i : 0.04	o : 0.04	d : 0.04	n : 0.04	] : 0.04	
c : 0.41	] : 0.12	2 : 0.12	i : 0.08	d : 0.08	= : 0.08	a : 0.04	b : 0.04	
] : 0.41	= : 0.12	2 : 0.12	i : 0.08	3 : 0.08	b : 0.08	d : 0.04	g : 0.04	
a : 0.20	i : 0.12	= : 0.12	c : 0.12	b : 0.12	3 : 0.08	g : 0.08	f : 0.04	d : 0.04	e : 0.04	
] : 0.29	i : 0.12	= : 0.12	c : 0.12	3 : 0.08	g : 0.08	f : 0.04	d : 0.04	e : 0.04	b : 0.04	
= : 0.20	i : 0.16	c : 0.16	f : 0.12	a : 0.08	] : 0.08	g : 0.08	d : 0.04	e : 0.04	
= : 0.20	i : 0.16	f : 0.12	] : 0.12	g : 0.12	c : 0.08	3 : 0.04	d : 0.04	2 : 0.04	e : 0.04	
= : 0.20	i : 0.16	f : 0.16	g : 0.12	c : 0.08	e : 0.08	b : 0.04	3 : 0.04	d : 0.04	2 : 0.04	
= : 0.16	f : 0.16	i : 0.12	g : 0.12	b : 0.08	e : 0.08	: : 0.04	2 : 0.04	3 : 0.04	d : 0.04	[ : 0.04	c : 0.04	
f : 0.16	: : 0.12	i : 0.12	= : 0.12	] : 0.08	d : 0.08	g : 0.08	e : 0.08	2 : 0.04	7 : 0.04	b : 0.04	

#score	237.67125980617507
#seq	24
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_CDS_m2_run1.txt

#BEAR
cc!!ggggggg[eeeeemmmmeeeee]ggggggg]ccc	chr11:64082628-64082875(+)$1	247	15	53	11.0057
cc"""iiiiiiiii[cccmmmmccciiiiiiiii4444	chr22:24967878-24968196(+)$1	318	123	161	14.5791
=======!!ccc!!ddddnnnnndddd333ccc=====	chr6:4056556-4056784(+)$1	228	154	192	13.7731
f[ccc[dddd####cccooooooccc333dddd22ccc	chr1:1190466-1190731(-)$1	265	23	61	14.4747
[ddddggggggg[ddddoooooodddd4444ggggggg	chr20:57415550-57415786(-)$1	236	38	76	14.2359
b=============[bboooooobb]============	chr8:109240394-109240619(-)$1	225	136	174	18.5492
ddddd$$$$$gggggggooooooggggggg4444dddd	chr19:49356973-49357239(-)$1	266	124	162	12.5666
ggggggg]bb]bb::bboooooobb===========ll	chr1:165621147-165621372(+)$1	225	131	169	12.3209
=========!!ccc[ddddmmmmddddccc========	chr17:48828136-48828389(+)$1	253	48	86	13.0086
cc####bb!!ccc[cccooooooccc]ccc22bb4444	chr12:123060342-123060628(+)$1	286	205	243	14.7984
ddiiiiiiiii!!ddddoooooodddd4444iiiiiii	chr6:31773762-31774000(-)$1	238	193	231	15.6158
ff####eeeee[eeeeeooooooeeeeeeeeeefffff	chr19:1469340-1469652(-)$1	312	115	153	11.0800
dd!!==========[bbmmmmbb]==========]ddd	chr11:34112100-34112324(+)$1	224	27	65	14.0197
ffffa!!dddd####bboooooobb22dddd22a]fff	chr8:109229514-109229789(-)$1	275	210	248	12.5931
========%%%%%%cccooooooccc==========::	chr10:122619667-122619927(+)$1	260	60	98	12.0295
bccc[cccbb!!ddddoooooodddd333bb]ccc]cc	chr3:31658412-31658658(+)$1	246	121	159	12.3163
$$eeeee[bb[ffffffooooooffffff333bb]eee	chr2:181927424-181927646(+)$1	222	91	129	11.4393
^^^eeeeeeeeee!!bboooooobb]eeeeedddd!!c	chr8:124221551-124221798(+)$1	247	157	195	11.5904
ddddhhhhhhhh[a[bboooooobb]ahhhhhhhh333	chr17:56166515-56166767(+)$1	252	149	187	12.7237
============"""bbnnnnnbb333===========	chr2:242276824-242277096(+)$1	272	197	235	16.4798
f!!dddd!!gggggggrrrrrrrrrggggggg]dddd2	chr6:147660334-147660612(+)$1	278	185	223	11.0720
fggggggg"""cccssssssssssccc]ggggggg333	chr3:194134445-194134669(-)$1	224	5	43	10.5640
c"""ddddccc####bbnnnnnbb4444ccc]dddd33	chr17:34173978-34174199(+)$1	221	16	54	12.9599
f"""dddd"""ffffffooooooffffffddddfffff	chr11:33162987-33163281(-)$1	294	93	131	11.8951
::bb!!a[gggggggbboooooobb]ggggggg]a22b	chr14:102445693-102445930(+)$1	237	54	92	12.8614
iiiii:::============oooooo============	chr2:187367237-187367534(+)$1	297	245	283	11.5156
[eeeee[cccbbeeeeeooooooeeeee]bb4444ccc	chr11:66391928-66392228(+)$1	300	118	156	11.4770
$$$===========bbpppppppbb]===========2	chr21:47690225-47690454(-)$1	229	24	62	11.9266
=========!!ccc[ddddmmmmddddccc========	chr17:48827994-48828251(+)$1	257	190	228	13.0086
dd:===========[bbmmmmbb]===========:gg	chr11:637277-637559(+)$1	282	132	170	12.2407
b!!bb[cccccc[ddddooooooddddccc]cccbb22	chr2:131904236-131904487(+)$1	251	41	79	13.0943
cc####ffffff"""cccnnnnnccc4444ffffff22	chr1:180257391-180257633(-)$1	242	77	115	11.9821
cdddd[ccc[ccc!!bbrrrrrrrrrbb22ccc]ccc2	chr11:9309880-9310172(-)$1	292	153	191	11.1858
hhhhhhh"""bb!!cccooooooccc22bbhhhhhhhh	chr7:135612195-135612408(-)$1	213	136	174	11.6025
ff!!ccc[dddd"""bboooooobb333dddd333ccc	chr2:181925423-181925640(+)$1	217	79	117	15.1544
gggggggccc[ccc[bbnnnnnbbccc22ccc]ggggg	chr1:46733166-46733392(+)$1	226	57	95	12.4324
==========ccc[cccooooooccc]ccc88888888	chr1:213061813-213062068(+)$1	255	40	78	12.4367
iiiiccc!!ccc"""bboooooobb333cccccc]iii	chr3:194174796-194175092(-)$1	296	176	214	17.0163
cccc!!ccciiiiiiiiillliiiiiiiii]ccc22cc	chr11:34119222-34119473(+)$1	251	70	108	12.8218
cc:iiiiiiiii"""cccmmmmccc4444iiiiiiiii	chr3:197598169-197598445(+)$1	276	210	248	13.8433
c[dddd!!ggggggg!!bbmmmmbb4444ggggggg]d	chr4:77957780-77958066(+)$1	286	183	221	11.1862
d[bb!!bb[a[ffffffooooooffffff]abb22bbd	chr1:78187509-78187776(-)$1	267	173	211	11.2516
iiii[bb[ddddcccbboooooobb]ccc]dddd]bb2	chr13:95813295-95813554(-)$1	259	194	232	13.1780
ddd"""=============mmmm=============22	chr12:102108247-102108474(+)$1	227	160	198	14.8834
ddd"""=============mmmm=============22	chr12:102108274-102108523(+)$1	249	133	171	14.8834
$$$ffffff[bb"""bbnnnnnbb333bbffffff333	chr14:23236505-23236719(+)$1	214	139	177	10.7284
""ccc!!ggggggg[bbrrrrrrrrrbb]ggggggg55	chr1:165623414-165623621(+)$1	207	111	149	10.9273
eeeee[iiiiiiiiicccmmmmccc22iiiiiiiiiee	chr11:62458510-62458808(-)$1	298	55	93	12.5010
##==========!!ccclllccc==========]dddd	chr1:6655377-6655622(-)$1	245	155	193	14.4898
##==========!!ccclllccc==========]dddd	chr1:6655422-6655633(-)$1	211	166	204	14.4898
ggg[dddd!!ccc!!bblllbb22ccc333dddd]ggg	chr4:71704790-71705080(-)$1	290	221	259	11.0888
f"""ccc!!ccc"""cccmmmmccc]ccc333ccc]ff	chr17:42398609-42398884(-)$1	275	227	265	13.1640
d[ddddgggggggddddoooooodddd]ggggggg]dd	chr6:105733263-105733536(-)$1	273	74	112	13.6011
ccca[eeeee[ffffffooooooffffff22eeeee]a	chrX:13336931-13337201(+)$1	270	199	237	11.6550
dddd[ccc[a"""ddddnnnnndddd333acccdddd]	chr5:137524540-137524839(-)$1	299	54	92	11.4472
:ccc[a!!iiiiiiiiiooooooiiiiiiiii]accc:	chr6:131931004-131931333(-)$1	329	221	259	14.1724

#otherMatches

#Seq PSSM
UGGGGGCUGCCCUGCUGCAACUAGUGCGGCGGCUGCAG	chr11:64082628-64082875(+)$1	247	15	53	11.0057
GGAGUGGGUGCUUGUGCAUAUAUGCUAGGUAUCUUUUG	chr22:24967878-24968196(+)$1	318	123	161	14.5791
GUGGAAACCGCAUACUUAAUGUCUAAGCACUGUUUUCC	chr6:4056556-4056784(+)$1	228	154	192	13.7731
CUCCAGCAGGCCAACCGGCACCACGGACUCCUGGGUGG	chr1:1190466-1190731(-)$1	265	23	61	14.4747
GGCUUGAGCUCCUCCCCUUCCCUGGGGCUCUGGGGCUC	chr20:57415550-57415786(-)$1	236	38	76	14.2359
ACUGUGUAAUUUUGGCUUUGUUUAGAUAAAAUUACAUG	chr8:109240394-109240619(-)$1	225	136	174	18.5492
GUCUAACCACCUUCUGUCUUGGUGCAGGAGCAACUAGA	chr19:49356973-49357239(-)$1	266	124	162	12.5666
UUUCCAGGAGGUGUUCAUCUAUUUGGAUAGUAGUUCAC	chr1:165621147-165621372(+)$1	225	131	169	12.3209
GACAGUGUAGUCCUGCAAAACAUUUUGAGGUACAUUGU	chr17:48828136-48828389(+)$1	253	48	86	13.0086
UUUUCCACUACAUUUCUUUUGUUAGAUAUGAUGUUAAU	chr12:123060342-123060628(+)$1	286	205	243	14.7984
GGGCCCUGGAACCUCUUUAAUUUGAGAAAUAUUUCAGG	chr6:31773762-31774000(-)$1	238	193	231	15.6158
CUCGGAGGUGGUGCgccgggcagggcgcucgccagggc	chr19:1469340-1469652(-)$1	312	115	153	11.0800
CUGCGUCUCAGCCUCAAGUAUUUCAGGCUGGGACAAGC	chr11:34112100-34112324(+)$1	224	27	65	14.0197
UUAAAGUUAUUCAACAGGUAAAACuaaaauauauauug	chr8:109229514-109229789(-)$1	275	210	248	12.5931
AAGAAGAGCUAUGCAGAUAACAUUCUUUCUUUUUCUUU	chr10:122619667-122619927(+)$1	260	60	98	12.0295
GUGUUCCUUAGUGUCAUCUAUUUGACUUAUACAGGUAC	chr3:31658412-31658658(+)$1	246	121	159	12.3163
AGCGGAUCCUCUGGUUGGAAGCAUAGCCACUCAGUAUU	chr2:181927424-181927646(+)$1	222	91	129	11.4393
AACACUUUGGUUCCUGAUGGCUUUCUGAACCCAGCCCU	chr8:124221551-124221798(+)$1	247	157	195	11.5904
GCGGCGGCAGCGAUGGCAAGCAGGCGGCGUUGCUGGGA	chr17:56166515-56166767(+)$1	252	149	187	12.7237
AUUUGAGAGAGAAGAGUUUUGUAUGUAUUUUUUUUAAA	chr2:242276824-242277096(+)$1	272	197	235	16.4798
GGUAGGAAAUAGAAAUUUCUAUUUUGUUUCUAAUCCUU	chr6:147660334-147660612(+)$1	278	185	223	11.0720
caucauaggaauucaauaaauUUAGAAAUUAUGAUACA	chr3:194134445-194134669(-)$1	224	5	43	10.5640
AAUUGCCAGAGUUUUGCCUGCUGCUUUCCUCGUGGCCU	chr17:34173978-34174199(+)$1	221	16	54	12.9599
UUAUAUCAGUAUUGCAGCAUUCACUGUAGUGAUAGAAA	chr11:33162987-33163281(-)$1	294	93	131	11.8951
ACGAAACUUUGCAUUCUUUCAUUAGCAAUGCAGUGGCU	chr14:102445693-102445930(+)$1	237	54	92	12.8614
UUUUAUAGAUUCUUGUUCAGAAAUAGCUGAACAAGAAU	chr2:187367237-187367534(+)$1	297	245	283	11.5156
CCAGCUACCUACCGGGCCCAGCCGUCCGUGUCACUGGG	chr11:66391928-66392228(+)$1	300	118	156	11.4770
AAUUUGCUGUUCAGGCUUUUGCUGCAUUGAACAGUAAU	chr21:47690225-47690454(-)$1	229	24	62	11.9266
GACAGUGUAGUCCUGCAAAACAUUUUGAGGUACAUUGU	chr17:48827994-48828251(+)$1	257	190	228	13.0086
GCGGCGCUGGUGGGGGGCGUGCUGCUCAUCGGCGCGGU	chr11:637277-637559(+)$1	282	132	170	12.2407
CUGGCACUGGGCAUGCUGGCAGGAGCAGCCACGGGCAU	chr2:131904236-131904487(+)$1	251	41	79	13.0943
UGACAGGCUGCAAAACAGUUUCUUUGGUGCUGCAGCGG	chr1:180257391-180257633(-)$1	242	77	115	11.9821
CUUUCCACUAGCCUUAUUUCUUGUUUGUUUGGUAAGUA	chr11:9309880-9310172(-)$1	292	153	191	11.1858
UUAAGUAAGUUUUGUUCUCCACUGAAGUAAUACUUAAC	chr7:135612195-135612408(-)$1	213	136	174	11.6025
CUGUCUAUUUGUUCCCUUUUGACAGACUGCAACCCUGG	chr2:181925423-181925640(+)$1	217	79	117	15.1544
CAGAAUGAUCUGCUUGAGUAUUUCAGCUUGGUACAUUU	chr1:46733166-46733392(+)$1	226	57	95	12.4324
CUUUGGGUUUUGAAUUUGCUGUUGAAAUCACUUACCCU	chr1:213061813-213062068(+)$1	255	40	78	12.4367
uaguacucagcacaaaguaaauucucaaugcagucauu	chr3:194174796-194175092(-)$1	296	176	214	17.0163
CGGGGAGCCCCACGAGGUAAUAUUUUGUGGUGGUGAUC	chr11:34119222-34119473(+)$1	251	70	108	12.8218
UUAAGCACAGUGGacagacauuucuuaagcauugugcu	chr3:197598169-197598445(+)$1	276	210	248	13.8433
UAAUUGGAUGUGCUUUCGCCUUUGCAUGUAAGUACGGU	chr4:77957780-77958066(+)$1	286	183	221	11.1862
GUCUCAUGUGUCCCUAGCUGGUUUUGGGGUCCAGUAGU	chr1:78187509-78187776(-)$1	267	173	211	11.2516
UGGAAGGGAUGCUGGGAAGAAAAUCACUAUGCAUGUUG	chr13:95813295-95813554(-)$1	259	194	232	13.1780
UGUUGAGAUUUGGAAAGUAAGUAUGCUUUUUAAGUUGU	chr12:102108247-102108474(+)$1	227	160	198	14.8834
UGUUGAGAUUUGGAAAGUAAGUAUGCUUUUUAAGUUGU	chr12:102108274-102108523(+)$1	249	133	171	14.8834
UUAGGAGUGGUGUUUCCUGGUUGGUUUCAUAUUUUGUU	chr14:23236505-23236719(+)$1	214	139	177	10.7284
CUGGCCUGGGCUUGGCCUGGAUUGUUGGACGAGUUCUU	chr1:165623414-165623621(+)$1	207	111	149	10.9273
AGGUCGAAAGGGGCAAGGACCCCCUUUUGUCCCUUUGA	chr11:62458510-62458808(-)$1	298	55	93	12.5010
UUUGGGAUCCACAGCCAUGAUGGGUGGGUCUCAUCUCA	chr1:6655377-6655622(-)$1	245	155	193	14.4898
UUUGGGAUCCACAGCCAUGAUGGGUGGGUCUCAUCUCA	chr1:6655422-6655633(-)$1	211	166	204	14.4898
GCAUCUUCUUGCUUUCCGCCGGCUGGUUGUGAAGUUGC	chr4:71704790-71705080(-)$1	290	221	259	11.0888
UGCCAUGUAAGACCUGUGAUCUCACUUCUCCCCAUUGU	chr17:42398609-42398884(-)$1	275	227	265	13.1640
UUCUCAGUGUUUCCAGGCUUAUUUUUGUGAGACACAUG	chr6:105733263-105733536(-)$1	273	74	112	13.6011
GAACUGUGGCCCGGCAGAUCUGACUGUUGUUGCUGCUG	chrX:13336931-13337201(+)$1	270	199	237	11.6550
AAGGCGAGACUCCUACCACCGAGGUGCCUGCUCCCUUU	chr5:137524540-137524839(-)$1	299	54	92	11.4472
CUAGUGAUUUUAGAACUGACAGAAGUUCUGAGCCCUAA	chr6:131931004-131931333(-)$1	329	221	259	14.1724

#DB
((..(((((((.(((((....))))).))))))).)))	chr11:64082628-64082875(+)$1	1	15	53	11.0057
((...(((((((((.(((....))))))))))))....	chr22:24967878-24968196(+)$1	1	123	161	14.5791
(((((((..(((..((((.....))))...))))))))	chr6:4056556-4056784(+)$1	1	154	192	13.7731
(.(((.((((....(((......)))...))))..)))	chr1:1190466-1190731(-)$1	1	23	61	14.4747
.(((((((((((.((((......))))....)))))))	chr20:57415550-57415786(-)$1	1	38	76	14.2359
((((((((((((((.((......)).))))))))))))	chr8:109240394-109240619(-)$1	1	136	174	18.5492
)((((.....(((((((......)))))))....))))	chr19:49356973-49357239(-)$1	1	124	162	12.5666
))))))).)).))..((......))(((((((((((..	chr1:165621147-165621372(+)$1	1	131	169	12.3209
(((((((((..(((.((((....)))))))))))))))	chr17:48828136-48828389(+)$1	1	48	86	13.0086
((....((..(((.(((......))).)))..))....	chr12:123060342-123060628(+)$1	1	205	243	14.7984
))(((((((((..((((......))))....)))))))	chr6:31773762-31774000(-)$1	1	193	231	15.6158
((....(((((.(((((......)))))))))))))))	chr19:1469340-1469652(-)$1	1	115	153	11.0800
((..((((((((((.((....)).)))))))))).)))	chr11:34112100-34112324(+)$1	1	27	65	14.0197
(((((..((((....((......))..))))..).)))	chr8:109229514-109229789(-)$1	1	210	248	12.5931
((((((((......(((......)))))))))))))..	chr10:122619667-122619927(+)$1	1	60	98	12.0295
((((.(((((..((((......))))...)).))).))	chr3:31658412-31658658(+)$1	1	121	159	12.3163
..(((((.((.((((((......))))))...)).)))	chr2:181927424-181927646(+)$1	1	91	129	11.4393
...)))))(((((..((......)).)))))((((..(	chr8:124221551-124221798(+)$1	1	157	195	11.5904
((((((((((((.(.((......)).)))))))))...	chr17:56166515-56166767(+)$1	1	149	187	12.7237
((((((((((((...((.....))...)))))))))))	chr2:242276824-242277096(+)$1	1	197	235	16.4798
(..((((..(((((((.........))))))).)))).	chr6:147660334-147660612(+)$1	1	185	223	11.0720
((((((((...(((..........))).)))))))...	chr3:194134445-194134669(-)$1	1	5	43	10.5640
(...(((((((....((.....))....))).))))..	chr17:34173978-34174199(+)$1	1	16	54	12.9599
(...((((...((((((......)))))))))))))))	chr11:33162987-33163281(-)$1	1	93	131	11.8951
..((..(.(((((((((......)).))))))).)..)	chr14:102445693-102445930(+)$1	1	54	92	12.8614
)))))...((((((((((((......))))))))))))	chr2:187367237-187367534(+)$1	1	245	283	11.5156
.(((((.((((((((((......))))).))....)))	chr11:66391928-66392228(+)$1	1	118	156	11.4770
...(((((((((((((.......)).))))))))))).	chr21:47690225-47690454(-)$1	1	24	62	11.9266
(((((((((..(((.((((....)))))))))))))))	chr17:48827994-48828251(+)$1	1	190	228	13.0086
)).(((((((((((.((....)).))))))))))).((	chr11:637277-637559(+)$1	1	132	170	12.2407
(..((.((((((.((((......))))))).)))))..	chr2:131904236-131904487(+)$1	1	41	79	13.0943
((....((((((...(((.....)))....))))))..	chr1:180257391-180257633(-)$1	1	77	115	11.9821
)((((.(((.(((..((.........))..))).))).	chr11:9309880-9310172(-)$1	1	153	191	11.1858
(((((((...((..(((......)))..))))))))))	chr7:135612195-135612408(-)$1	1	136	174	11.6025
((..(((.((((...((......))...))))...)))	chr2:181925423-181925640(+)$1	1	79	117	15.1544
((((((((((.(((.((.....)))))..))).)))))	chr1:46733166-46733392(+)$1	1	57	95	12.4324
(((((((((((((.(((......))).)))........	chr1:213061813-213062068(+)$1	1	40	78	12.4367
(((((((..(((...((......))...)))))).)))	chr3:194174796-194175092(-)$1	1	176	214	17.0163
)(((..((((((((((((...))))))))).)))..))	chr11:34119222-34119473(+)$1	1	70	108	12.8218
)).(((((((((...(((....)))....)))))))))	chr3:197598169-197598445(+)$1	1	210	248	13.8433
(.((((..(((((((..((....))....))))))).)	chr4:77957780-77958066(+)$1	1	183	221	11.1862
(.((..((.(.((((((......)))))).)))..)))	chr1:78187509-78187776(-)$1	1	173	211	11.2516
((((.((.(((((((((......)).))).)))).)).	chr13:95813295-95813554(-)$1	1	194	232	13.1780
(((...(((((((((((((....)))))))))))))..	chr12:102108247-102108474(+)$1	1	160	198	14.8834
(((...(((((((((((((....)))))))))))))..	chr12:102108274-102108523(+)$1	1	133	171	14.8834
...((((((.((...((.....))...))))))))...	chr14:23236505-23236719(+)$1	1	139	177	10.7284
..(((..(((((((.((.........)).)))))))..	chr1:165623414-165623621(+)$1	1	111	149	10.9273
(((((.((((((((((((....)))..)))))))))))	chr11:62458510-62458808(-)$1	1	55	93	12.5010
..((((((((((..(((...))))))))))))).))))	chr1:6655377-6655622(-)$1	1	155	193	14.4898
..((((((((((..(((...))))))))))))).))))	chr1:6655422-6655633(-)$1	1	166	204	14.4898
(((.((((..(((..((...))..)))...)))).)))	chr4:71704790-71705080(-)$1	1	221	259	11.0888
(...(((..(((...(((....))).)))...))).))	chr17:42398609-42398884(-)$1	1	227	265	13.1640
(.(((((((((((((((......)))).))))))).))	chr6:105733263-105733536(-)$1	1	74	112	13.6011
((((.(((((.((((((......))))))..))))).)	chrX:13336931-13337201(+)$1	1	199	237	11.6550
((((.(((.(...((((.....))))...)))))))).	chr5:137524540-137524839(-)$1	1	54	92	11.4472
.(((.(..(((((((((......))))))))).)))).	chr6:131931004-131931333(-)$1	1	221	259	14.1724

#PSSM
c : 0.17	d : 0.17	f : 0.14	= : 0.10	b : 0.05	g : 0.05	$ : 0.05	i : 0.05	[ : 0.03	: : 0.03	# : 0.03	^ : 0.01	h : 0.01	" : 0.01	e : 0.01	
d : 0.17	c : 0.16	= : 0.12	[ : 0.07	g : 0.07	" : 0.07	f : 0.05	$ : 0.05	i : 0.05	! : 0.03	e : 0.03	# : 0.03	^ : 0.01	: : 0.01	h : 0.01	
= : 0.16	d : 0.16	c : 0.10	! : 0.08	" : 0.07	g : 0.07	i : 0.07	# : 0.05	e : 0.05	b : 0.03	$ : 0.03	: : 0.03	f : 0.01	^ : 0.01	h : 0.01	
= : 0.19	d : 0.14	" : 0.10	c : 0.08	i : 0.08	e : 0.07	! : 0.05	g : 0.05	# : 0.05	b : 0.05	f : 0.03	h : 0.01	[ : 0.01	a : 0.01	
= : 0.21	d : 0.16	c : 0.08	[ : 0.08	g : 0.07	e : 0.07	" : 0.05	# : 0.05	i : 0.05	! : 0.05	h : 0.03	a : 0.01	b : 0.01	f : 0.01	
= : 0.21	d : 0.10	g : 0.08	! : 0.08	c : 0.08	[ : 0.07	e : 0.07	i : 0.05	# : 0.05	h : 0.03	" : 0.03	$ : 0.01	: : 0.01	b : 0.01	f : 0.01	a : 0.01	
= : 0.24	c : 0.14	g : 0.10	d : 0.08	i : 0.07	e : 0.07	! : 0.07	b : 0.05	h : 0.03	f : 0.03	$ : 0.01	a : 0.01	: : 0.01	[ : 0.01	
= : 0.23	c : 0.12	! : 0.10	g : 0.08	d : 0.08	i : 0.07	[ : 0.07	e : 0.05	b : 0.03	f : 0.03	$ : 0.01	] : 0.01	h : 0.01	: : 0.01	" : 0.01	
= : 0.23	g : 0.10	! : 0.10	c : 0.10	i : 0.08	d : 0.07	b : 0.05	e : 0.05	" : 0.05	f : 0.03	[ : 0.03	$ : 0.01	% : 0.01	h : 0.01	
= : 0.19	g : 0.12	c : 0.12	i : 0.10	d : 0.07	! : 0.07	b : 0.05	e : 0.05	" : 0.05	[ : 0.03	a : 0.03	$ : 0.01	% : 0.01	h : 0.01	f : 0.01	
= : 0.17	c : 0.16	g : 0.14	i : 0.10	[ : 0.07	! : 0.05	d : 0.05	" : 0.05	b : 0.05	e : 0.03	# : 0.01	] : 0.01	% : 0.01	h : 0.01	f : 0.01	
c : 0.21	= : 0.17	g : 0.12	i : 0.08	f : 0.08	b : 0.07	# : 0.05	[ : 0.03	! : 0.03	d : 0.03	% : 0.01	e : 0.01	h : 0.01	" : 0.01	
c : 0.16	" : 0.14	= : 0.12	g : 0.10	! : 0.08	e : 0.07	i : 0.07	f : 0.07	# : 0.05	[ : 0.05	b : 0.01	% : 0.01	d : 0.01	
! : 0.12	= : 0.12	" : 0.12	d : 0.10	g : 0.08	c : 0.08	i : 0.07	f : 0.07	e : 0.05	# : 0.05	[ : 0.03	: : 0.01	% : 0.01	a : 0.01	
[ : 0.16	c : 0.14	d : 0.12	" : 0.12	g : 0.07	f : 0.07	e : 0.05	! : 0.05	= : 0.05	i : 0.05	# : 0.03	: : 0.01	s : 0.01	b : 0.01	
b : 0.33	c : 0.21	d : 0.16	f : 0.07	e : 0.05	= : 0.05	g : 0.03	i : 0.03	s : 0.01	! : 0.01	
b : 0.32	c : 0.21	d : 0.14	f : 0.07	e : 0.05	= : 0.05	i : 0.03	g : 0.01	o : 0.01	r : 0.01	s : 0.01	p : 0.01	! : 0.01	
o : 0.48	c : 0.08	n : 0.08	m : 0.05	d : 0.05	r : 0.05	= : 0.05	l : 0.05	s : 0.01	p : 0.01	i : 0.01	b : 0.01	
o : 0.48	m : 0.12	n : 0.12	l : 0.07	r : 0.05	= : 0.05	d : 0.03	s : 0.01	p : 0.01	b : 0.01	
o : 0.48	m : 0.21	n : 0.12	l : 0.07	r : 0.05	s : 0.01	= : 0.01	p : 0.01	
o : 0.49	m : 0.21	n : 0.12	r : 0.05	c : 0.03	s : 0.01	p : 0.01	l : 0.01	b : 0.01	
o : 0.49	m : 0.16	n : 0.12	b : 0.05	r : 0.05	c : 0.03	e : 0.01	s : 0.01	p : 0.01	i : 0.01	
o : 0.48	c : 0.10	b : 0.10	m : 0.08	r : 0.05	n : 0.03	d : 0.03	e : 0.01	s : 0.01	p : 0.01	i : 0.01	2 : 0.01	
b : 0.26	c : 0.17	d : 0.16	f : 0.07	= : 0.07	e : 0.05	r : 0.05	] : 0.03	i : 0.03	g : 0.01	s : 0.01	o : 0.01	2 : 0.01	
c : 0.23	b : 0.19	d : 0.16	= : 0.10	f : 0.07	e : 0.05	r : 0.05	3 : 0.03	i : 0.03	g : 0.01	4 : 0.01	o : 0.01	
d : 0.16	c : 0.16	] : 0.12	= : 0.12	f : 0.07	3 : 0.07	e : 0.05	i : 0.05	4 : 0.05	g : 0.03	2 : 0.03	r : 0.03	o : 0.01	
= : 0.19	d : 0.12	3 : 0.12	c : 0.08	f : 0.07	4 : 0.07	] : 0.05	i : 0.05	g : 0.05	e : 0.05	2 : 0.05	b : 0.03	a : 0.01	
= : 0.21	3 : 0.12	c : 0.12	4 : 0.10	g : 0.07	i : 0.07	f : 0.07	e : 0.05	b : 0.05	] : 0.03	2 : 0.03	d : 0.01	h : 0.01	
= : 0.21	c : 0.16	g : 0.10	3 : 0.08	4 : 0.08	i : 0.07	f : 0.07	e : 0.03	d : 0.03	] : 0.03	2 : 0.03	b : 0.03	h : 0.01	
= : 0.21	g : 0.14	c : 0.14	i : 0.08	3 : 0.07	d : 0.07	4 : 0.05	b : 0.05	e : 0.03	2 : 0.03	] : 0.03	h : 0.01	f : 0.01	a : 0.01	
= : 0.24	g : 0.12	c : 0.10	d : 0.10	i : 0.07	4 : 0.05	2 : 0.03	e : 0.03	b : 0.03	3 : 0.03	h : 0.03	] : 0.03	f : 0.03	8 : 0.01	a : 0.01	
= : 0.24	g : 0.14	c : 0.12	d : 0.10	i : 0.08	4 : 0.03	2 : 0.03	e : 0.03	] : 0.03	3 : 0.03	h : 0.03	f : 0.03	8 : 0.01	b : 0.01	
= : 0.24	c : 0.14	g : 0.12	d : 0.10	i : 0.07	b : 0.05	] : 0.05	4 : 0.03	e : 0.03	h : 0.03	f : 0.03	2 : 0.01	3 : 0.01	8 : 0.01	
= : 0.23	g : 0.12	d : 0.10	c : 0.08	i : 0.07	f : 0.07	] : 0.07	2 : 0.03	4 : 0.03	b : 0.03	a : 0.03	h : 0.03	3 : 0.01	8 : 0.01	e : 0.01	
= : 0.21	] : 0.12	d : 0.12	g : 0.10	f : 0.07	c : 0.07	4 : 0.05	2 : 0.05	i : 0.05	h : 0.03	a : 0.01	b : 0.01	3 : 0.01	8 : 0.01	e : 0.01	
= : 0.19	d : 0.12	c : 0.10	g : 0.08	i : 0.07	f : 0.07	] : 0.05	3 : 0.05	b : 0.05	4 : 0.03	e : 0.03	2 : 0.03	! : 0.01	: : 0.01	h : 0.01	8 : 0.01	
c : 0.14	= : 0.12	d : 0.12	2 : 0.08	g : 0.07	f : 0.07	3 : 0.07	i : 0.05	4 : 0.03	e : 0.03	] : 0.03	b : 0.03	l : 0.01	: : 0.01	! : 0.01	h : 0.01	8 : 0.01	5 : 0.01	
2 : 0.14	c : 0.12	d : 0.12	= : 0.10	g : 0.07	f : 0.07	3 : 0.07	i : 0.05	4 : 0.03	: : 0.03	e : 0.03	l : 0.01	b : 0.01	h : 0.01	8 : 0.01	5 : 0.01	a : 0.01	] : 0.01	

#score	723.9404443217549
#seq	56
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_CDS_m1_run1.txt

#BEAR
eeeddddtttttttttttdddd]eeeee	chr4:128841882-128842185(-)$1	303	86	114	22.7011
=!!ddddtttttttttttdddd]=====	chr6:79679386-79679658(-)$1	272	160	188	24.1849
======uuuuuuuuuuuu==========	chr6:350587-350948(+)$1	361	23	51	26.0376
###cccuuuuuuuuuuuuccc55555bb	chr15:62160025-62160303(-)$1	278	121	149	20.9169
ee[awwwwwwwwwwwwwwa]eeeeeeee	chr6:132014655-132015016(+)$1	361	138	166	22.0970
iiiiiivvvvvvvvvvvvviiiiiiiii	chr21:30399978-30400315(+)$1	337	223	251	25.6319
!!bbwwwwwwwwwwwwwwbb]a]=====	chr14:50923055-50923336(-)$1	281	85	113	22.3536
"""cccwwwwwwwwwwwwwwcccccc]b	chr15:59296191-59296488(+)$1	297	102	130	23.1349
"""cccwwwwwwwwwwwwwwccc333a2	chr13:39602194-39602480(-)$1	286	230	258	23.4554
cc[ddddtttttttttttddddccc]cc	chr11:46098181-46098409(-)$1	228	39	67	23.3848
ggggggvvvvvvvvvvvvvggggggghh	chrX:13337333-13337569(+)$1	236	153	181	25.0028
iiiiiiuuuuuuuuuuuuiiiiiiiii3	chr16:74990375-74990752(-)$1	377	202	230	25.7408
gggggggtttttttttttggggggg333	chr1:35852949-35853195(+)$1	246	101	129	24.7999
!!ddddtttttttttttdddd22ccc]f	chr13:20593692-20593921(+)$1	229	166	194	22.3222
gggggggtttttttttttggggggg:::	chr5:89989526-89989817(+)$1	291	56	84	21.9764
gggggguuuuuuuuuuuugggggggeee	chr11:47813262-47813589(-)$1	327	206	234	25.2775
[eeeeevvvvvvvvvvvvveeeeebb]b	chr14:61497136-61497389(+)$1	253	100	128	23.3928
fff[avvvvvvvvvvvvva]ffffff]c	chr6:10931579-10931892(+)$1	313	98	126	23.8589
gggggguuuuuuuuuuuuggggggg22f	chrX:108926557-108926842(-)$1	285	220	248	25.0992
=======ttttttttttt==========	chr12:69107458-69107714(+)$1	256	207	235	25.1450
%ddddvvvvvvvvvvvvvdddd4444ee	chr11:74680430-74680715(+)$1	285	168	196	23.0833
ddddwwwwwwwwwwwwwwdddddddd[e	chr13:39616057-39616393(+)$1	336	12	40	20.8920
f!!cccuuuuuuuuuuuuccc22fffff	chr8:104439415-104439735(+)$1	320	186	214	24.3418
gggggggtttttttttttggggggg:::	chr5:37327567-37327847(-)$1	280	20	48	21.9764
ffffffuuuuuuuuuuuuffffffeeee	chr2:32314568-32314873(+)$1	305	107	135	23.6032
ffffffuuuuuuuuuuuuffffff:::e	chr2:9676822-9677162(-)$1	340	187	215	21.2679
gggggggtttttttttttggggggg:::	chr2:109407937-109408226(+)$1	289	178	206	21.9764
=[a[bbuuuuuuuuuuuubba]======	chr20:3899201-3899439(+)$1	238	31	59	24.4894
gggggggtttttttttttggggggg22d	chr2:97830093-97830321(+)$1	228	19	47	24.1526
=======ttttttttttt==========	chr2:230675657-230675968(-)$1	311	23	51	25.1450
iiiiiiitttttttttttiiiiiiiiic	chr19:30503347-30503637(+)$1	290	152	180	24.6184
dd[cccyyyyyyyyyyyyyyyyccc]dd	chr15:63935144-63935442(-)$1	298	84	112	20.5202
%%%cccuuuuuuuuuuuuccc4444bb]	chr1:22405060-22405320(+)$1	260	125	153	22.6714
::dddduuuuuuuuuuuuddddiiiiii	chr1:46099805-46100136(-)$1	331	173	201	22.2876
iiiiiivvvvvvvvvvvvviiiiiiiii	chr2:114500064-114500381(-)$1	317	244	272	25.6319
ccc[ccctttttttttttccc]cccfff	chr1:169435111-169435379(-)$1	268	18	46	23.8804
cccddddtttttttttttdddd]cccdd	chr1:67889717-67889999(-)$1	282	144	172	22.9544
hhhcccvvvvvvvvvvvvvccc]hhhhh	chr2:202342824-202343186(+)$1	362	93	121	23.5935
Feeeeeuuuuuuuuuuuueeeee:gggg	chr1:197104253-197104622(-)$1	369	46	74	22.5615
'''cccuuuuuuuuuuuuccc4444ddd	chr1:47765599-47765858(-)$1	259	163	191	22.7839
)ddddvvvvvvvvvvvvvdddd>>>>>>	chr6:10958899-10959149(+)$1	250	152	180	22.0315
iiiiiwwwwwwwwwwwwwwiiiiiiiii	chr6:31797511-31797767(+)$1	256	170	198	24.0893
##eeeeettttttttttteeeee333ee	chr15:59180656-59180993(-)$1	337	165	193	23.5372
"eeeeevvvvvvvvvvvvveeeee]eee	chr22:19048357-19048665(-)$1	308	226	254	23.8660
ggggggvvvvvvvvvvvvvggggggg44	chr11:58378643-58378897(+)$1	254	170	198	25.4323
ggggggwwwwwwwwwwwwwwgggggggc	chr6:42994703-42995005(+)$1	302	39	67	23.6992
fffffftttttttttttffffff333gg	chr10:24885459-24885736(-)$1	277	168	196	22.8231
eeeeewwwwwwwwwwwwwweeeeeffff	chr4:74042816-74043207(-)$1	391	67	95	21.8884
fffffvvvvvvvvvvvvvffffff:a[c	chr8:80914950-80915379(-)$1	429	141	169	22.6582
ffffffuuuuuuuuuuuuffffff]ddd	chr2:39281648-39281889(-)$1	241	149	177	23.5658
ee[accctttttttttttccc]a]eeee	chr12:104344986-104345404(-)$1	418	268	296	23.8899
ffffffftttttttttttffffffA}FF	chr1:44436301-44436663(+)$1	362	255	283	20.6599
c[dddduuuuuuuuuuuudddd22ccc:	chr6:34956975-34957259(+)$1	284	22	50	22.9084
ddd[bbtttttttttttbb]dddd]ccc	chr14:78043121-78043438(-)$1	317	15	43	21.4336
###cccuuuuuuuuuuuuccc4444fff	chr5:68660574-68660913(-)$1	339	73	101	24.7224
ee[cccwwwwwwwwwwwwwwccc22eee	chr6:157256584-157256850(+)$1	266	33	61	22.6706
hhhhhhhttttttttttthhhhhhhh44	chr18:66358318-66358601(-)$1	283	51	79	21.4930
hhhhhhvvvvvvvvvvvvvhhhhhhhh4	chr1:78162852-78163128(-)$1	276	82	110	22.6292
ffffffuuuuuuuuuuuuffffff::::	chr2:203157494-203157739(+)$1	245	74	102	20.4381
iiiiiiuuuuuuuuuuuuiiiiiiiiic	chr2:207634702-207634955(+)$1	253	90	118	25.6866
gggggguuuuuuuuuuuuggggggg444	chr17:35556894-35557201(-)$1	307	52	80	25.5272
ggggwwwwwwwwwwwwwwggggggg]ii	chr2:135878248-135878531(+)$1	283	184	212	23.5994

#otherMatches

#Seq PSSM
CAGAAAUGAUUCUUGUAAGUUUGCUGUA	chr4:128841882-128842185(-)$1	303	86	114	22.7011
UAAGUGAUUUACUAUUUUUCAUAAUUGA	chr6:79679386-79679658(-)$1	272	160	188	24.1849
UGUAGAAUCAUCCAUCCGUCUACAGCUA	chr6:350587-350948(+)$1	361	23	51	26.0376
UCUAACUUUAUUUUCUUUGUUUUUCUGC	chr15:62160025-62160303(-)$1	278	121	149	20.9169
UGCCUUUAAUAACCAUUUGUCAUUAUAA	chr6:132014655-132015016(+)$1	361	138	166	22.0970
UUUGUGUCAGUAAGUAAUCCAUAAAGUG	chr21:30399978-30400315(+)$1	337	223	251	25.6319
CAGCUUCAGAAAUAAAUUGUAUGUGUUU	chr14:50923055-50923336(-)$1	281	85	113	22.3536
CUUGGAUUUAUUUAUUUUAUUCCAGUGU	chr15:59296191-59296488(+)$1	297	102	130	23.1349
AAUGGGUUAAAAAUGAACAUCCCUGCGG	chr13:39602194-39602480(-)$1	286	230	258	23.4554
AAUGCUGACUUAAAGAAACAGCUUCAUG	chr11:46098181-46098409(-)$1	228	39	67	23.3848
UGGUGUAUCCAUCUCUUCGACACUGAUG	chrX:13337333-13337569(+)$1	236	153	181	25.0028
GUUGUGUUUUUAUACUAUUAUAAUGUUG	chr16:74990375-74990752(-)$1	377	202	230	25.7408
GCAGGGCAAAAUGUUUCAGUUCUGUGGC	chr1:35852949-35853195(+)$1	246	101	129	24.7999
UAUUAAAAUUUCCAAACUUAAAUUGUAU	chr13:20593692-20593921(+)$1	229	166	194	22.3222
GUGUUUGUACUAUGACUUUAAACAUUUU	chr5:89989526-89989817(+)$1	291	56	84	21.9764
AUAAUAGUAAUAUAUAAAUGUUAUAGUA	chr11:47813262-47813589(-)$1	327	206	234	25.2775
AGUAGGUAAGAAAAAGUAUUUUACAUUG	chr14:61497136-61497389(+)$1	253	100	128	23.3928
CCAGUUUUCCCUCCCAGUAGUGGCAGUG	chr6:10931579-10931892(+)$1	313	98	126	23.8589
UUUCUUACCAAUGCCAAGAAGAAAAACG	chrX:108926557-108926842(-)$1	285	220	248	25.0992
AUCUUUGUUUUGCUCUUCUAAAGGUUUG	chr12:69107458-69107714(+)$1	256	207	235	25.1450
UUUAUUUGAACCUAUUUUGUGAUGAUGG	chr11:74680430-74680715(+)$1	285	168	196	23.0833
GGCUGUAAUUUACGAAGAAGCUAUAGUG	chr13:39616057-39616393(+)$1	336	12	40	20.8920
GUUUUCCCGAUUGUAAAUGAGUUCUGAU	chr8:104439415-104439735(+)$1	320	186	214	24.3418
CAACUCAGGCCACAAAUAUGAGUUGUGU	chr5:37327567-37327847(-)$1	280	20	48	21.9764
UAUCAAUUAAUGUAUAAUUUGAUGUGGG	chr2:32314568-32314873(+)$1	305	107	135	23.6032
GAAUGCAUUUUUCUUCAGGCAUUUUAAA	chr2:9676822-9677162(-)$1	340	187	215	21.2679
AUUAUUUUUUUAAAGCCUAGAUGAUGAA	chr2:109407937-109408226(+)$1	289	178	206	21.9764
UGCACAUGGUGCUGUAUUUGGGGUAGCU	chr20:3899201-3899439(+)$1	238	31	59	24.4894
UAUGUUGUCAAACCCAUUCAGCAUACGG	chr2:97830093-97830321(+)$1	228	19	47	24.1526
UUAUUUUCCUUUAUUAAAAAAAUAGGAU	chr2:230675657-230675968(-)$1	311	23	51	25.1450
UUAAUCUGAAAAGUCAUAAGAUUAAAUU	chr19:30503347-30503637(+)$1	290	152	180	24.6184
GUAGACUUUAGAAUAUGUUUUUGUCAAU	chr15:63935144-63935442(-)$1	298	84	112	20.5202
CCUGUUUUUAAAGAUCUUGACUUCUCAU	chr1:22405060-22405320(+)$1	260	125	153	22.6714
CUGAGCUUCUGUUUGUGUGCUUGUUCUG	chr1:46099805-46100136(-)$1	331	173	201	22.2876
GAUACCGGUAGGAAGUUAGGGUAUCAAA	chr2:114500064-114500381(-)$1	317	244	272	25.6319
GAUGCUGCUUUGUGUCUUCAGGGUCUGG	chr1:169435111-169435379(-)$1	268	18	46	23.8804
GACCCAGAAUUGAAAGCACUGGAGUUUU	chr1:67889717-67889999(-)$1	282	144	172	22.9544
AGUGCUGCUAAAAUCCCUGAGCUACUUG	chr2:202342824-202343186(+)$1	362	93	121	23.5935
AGGAAAUAUCGCUUUACUUUUCCCCAUU	chr1:197104253-197104622(-)$1	369	46	74	22.5615
CUAGCAAAUAACUUUAAAUGCACACCUG	chr1:47765599-47765858(-)$1	259	163	191	22.7839
UGCAAAGAAAGCACCGGAUUGCCUAAUA	chr6:10958899-10959149(+)$1	250	152	180	22.0315
UUGAGGUGGACUGUUGGGACUCAAGGAC	chr6:31797511-31797767(+)$1	256	170	198	24.0893
GUAUGACUCCAAGUAAAUGUCGUUUGAU	chr15:59180656-59180993(-)$1	337	165	193	23.5372
AGACGCUUACUAUGCCCAUGUGUCGGUA	chr22:19048357-19048665(-)$1	308	226	254	23.8660
AAUUGUCUCGUUUCUCUUUACAAUUAUA	chr11:58378643-58378897(+)$1	254	170	198	25.4323
gcagugagccaagaucacaccacugcac	chr6:42994703-42995005(+)$1	302	39	67	23.6992
UCUGUUUUCCUUUUCAUAGCAGACCUUA	chr10:24885459-24885736(-)$1	277	168	196	22.8231
UCCAGAAACACAGGCUAGACUGGAAGCU	chr4:74042816-74043207(-)$1	391	67	95	21.8884
GGAGAGUAAGUAAAAUCAUUUCCAAGUA	chr8:80914950-80915379(-)$1	429	141	169	22.6582
AUAUAUGCCUCUCAUUGAAUGUGUUGUG	chr2:39281648-39281889(-)$1	241	149	177	23.5658
AUUUCUUGAAAACUGCCAAAGCACAUAU	chr12:104344986-104345404(-)$1	418	268	296	23.8899
UUCACUGACCACAUUUCCCAGUGAUGAC	chr1:44436301-44436663(+)$1	362	255	283	20.6599
CAGAGGGAACGUCCACCACCUCCAGCAA	chr6:34956975-34957259(+)$1	284	22	50	22.9084
aauugauuauuuuaacuucuauuuccau	chr14:78043121-78043438(-)$1	317	15	43	21.4336
AUGCAUUGAAAAGAAAACGugaagauga	chr5:68660574-68660913(-)$1	339	73	101	24.7224
UAUGGAACUAGAUCUCAACCUCCUCUGG	chr6:157256584-157256850(+)$1	266	33	61	22.6706
ACUUACUUUGUUUAUGAUGGUAAGUUCC	chr18:66358318-66358601(-)$1	283	51	79	21.4930
CUUCAAGCAGAAGAAAAAAUUGAAGUAG	chr1:78162852-78163128(-)$1	276	82	110	22.6292
CCCAAUGUUACAGUCAUGGUUGGGGAAU	chr2:203157494-203157739(+)$1	245	74	102	20.4381
UUUUGUAAUUAUAUUUCAAUAGGAACGU	chr2:207634702-207634955(+)$1	253	90	118	25.6866
CCUUUCUCUCUUUUAUUUGAAAGGAUUU	chr17:35556894-35557201(-)$1	307	52	80	25.5272
AUUUACCUAUGUACUUCAAGAUUGGCAG	chr2:135878248-135878531(+)$1	283	184	212	23.5994

#DB
(((((((...........)))).)))))	chr4:128841882-128842185(-)$1	1	86	114	22.7011
(..((((...........)))).)))))	chr6:79679386-79679658(-)$1	1	160	188	24.1849
((((((............))))))))))	chr6:350587-350948(+)$1	1	23	51	26.0376
...(((............))).....))	chr15:62160025-62160303(-)$1	1	121	149	20.9169
((.(..............).))))))))	chr6:132014655-132015016(+)$1	1	138	166	22.0970
((((((.............)))))))))	chr21:30399978-30400315(+)$1	1	223	251	25.6319
..((..............)).).)))))	chr14:50923055-50923336(-)$1	1	85	113	22.3536
...(((..............)))))).)	chr15:59296191-59296488(+)$1	1	102	130	23.1349
...(((..............)))...).	chr13:39602194-39602480(-)$1	1	230	258	23.4554
((.((((...........))))))).))	chr11:46098181-46098409(-)$1	1	39	67	23.3848
((((((.............)))))))((	chrX:13337333-13337569(+)$1	1	153	181	25.0028
((((((............))))))))).	chr16:74990375-74990752(-)$1	1	202	230	25.7408
(((((((...........)))))))...	chr1:35852949-35853195(+)$1	1	101	129	24.7999
..((((...........))))..))).)	chr13:20593692-20593921(+)$1	1	166	194	22.3222
(((((((...........)))))))...	chr5:89989526-89989817(+)$1	1	56	84	21.9764
((((((............))))))))))	chr11:47813262-47813589(-)$1	1	206	234	25.2775
.(((((.............))))))).)	chr14:61497136-61497389(+)$1	1	100	128	23.3928
(((.(.............).)))))).)	chr6:10931579-10931892(+)$1	1	98	126	23.8589
((((((............)))))))..)	chrX:108926557-108926842(-)$1	1	220	248	25.0992
(((((((...........))))))))))	chr12:69107458-69107714(+)$1	1	207	235	25.1450
.((((.............))))....))	chr11:74680430-74680715(+)$1	1	168	196	23.0833
((((..............))))((((.(	chr13:39616057-39616393(+)$1	1	12	40	20.8920
(..(((............)))..)))))	chr8:104439415-104439735(+)$1	1	186	214	24.3418
(((((((...........)))))))...	chr5:37327567-37327847(-)$1	1	20	48	21.9764
((((((............))))))))))	chr2:32314568-32314873(+)$1	1	107	135	23.6032
((((((............))))))...(	chr2:9676822-9677162(-)$1	1	187	215	21.2679
(((((((...........)))))))...	chr2:109407937-109408226(+)$1	1	178	206	21.9764
(.(.((............))).))))))	chr20:3899201-3899439(+)$1	1	31	59	24.4894
(((((((...........)))))))..)	chr2:97830093-97830321(+)$1	1	19	47	24.1526
(((((((...........))))))))))	chr2:230675657-230675968(-)$1	1	23	51	25.1450
(((((((...........))))))))))	chr19:30503347-30503637(+)$1	1	152	180	24.6184
((.(((................))).))	chr15:63935144-63935442(-)$1	1	84	112	20.5202
...(((............)))....)).	chr1:22405060-22405320(+)$1	1	125	153	22.6714
..((((............))))((((((	chr1:46099805-46100136(-)$1	1	173	201	22.2876
((((((.............)))))))))	chr2:114500064-114500381(-)$1	1	244	272	25.6319
(((.(((...........))).))))))	chr1:169435111-169435379(-)$1	1	18	46	23.8804
(((((((...........)))).)))))	chr1:67889717-67889999(-)$1	1	144	172	22.9544
((((((.............))).)))))	chr2:202342824-202343186(+)$1	1	93	121	23.5935
((((((............))))).((((	chr1:197104253-197104622(-)$1	1	46	74	22.5615
...(((............)))....)))	chr1:47765599-47765858(-)$1	1	163	191	22.7839
.((((.............))))......	chr6:10958899-10959149(+)$1	1	152	180	22.0315
(((((..............)))))))))	chr6:31797511-31797767(+)$1	1	170	198	24.0893
..(((((...........)))))...))	chr15:59180656-59180993(-)$1	1	165	193	23.5372
.(((((.............))))).)))	chr22:19048357-19048665(-)$1	1	226	254	23.8660
((((((.............)))))))..	chr11:58378643-58378897(+)$1	1	170	198	25.4323
((((((..............))))))))	chr6:42994703-42995005(+)$1	1	39	67	23.6992
((((((...........))))))...))	chr10:24885459-24885736(-)$1	1	168	196	22.8231
(((((..............)))))((((	chr4:74042816-74043207(-)$1	1	67	95	21.8884
(((((.............)))))).(.(	chr8:80914950-80915379(-)$1	1	141	169	22.6582
((((((............)))))).)))	chr2:39281648-39281889(-)$1	1	149	177	23.5658
((.((((...........))).).))))	chr12:104344986-104345404(-)$1	1	268	296	23.8899
)((((((...........))))))).))	chr1:44436301-44436663(+)$1	1	255	283	20.6599
(.((((............))))..))).	chr6:34956975-34957259(+)$1	1	22	50	22.9084
(((.((...........)).)))).)))	chr14:78043121-78043438(-)$1	1	15	43	21.4336
...(((............)))....)))	chr5:68660574-68660913(-)$1	1	73	101	24.7224
((.(((..............)))..)))	chr6:157256584-157256850(+)$1	1	33	61	22.6706
(((((((...........))))))))..	chr18:66358318-66358601(-)$1	1	51	79	21.4930
((((((.............)))))))).	chr1:78162852-78163128(-)$1	1	82	110	22.6292
((((((............))))))....	chr2:203157494-203157739(+)$1	1	74	102	20.4381
((((((............))))))))))	chr2:207634702-207634955(+)$1	1	90	118	25.6866
((((((............)))))))...	chr17:35556894-35557201(-)$1	1	52	80	25.5272
((((..............))))))).))	chr2:135878248-135878531(+)$1	1	184	212	23.5994

#PSSM
g : 0.19	f : 0.14	i : 0.09	e : 0.08	= : 0.08	c : 0.06	# : 0.04	" : 0.04	d : 0.04	h : 0.04	! : 0.03	% : 0.03	[ : 0.01	: : 0.01	F : 0.01	' : 0.01	) : 0.01	
g : 0.19	e : 0.12	f : 0.12	i : 0.09	d : 0.08	! : 0.06	= : 0.04	# : 0.04	c : 0.04	h : 0.04	" : 0.03	[ : 0.03	% : 0.01	: : 0.01	' : 0.01	
g : 0.19	f : 0.12	d : 0.11	e : 0.09	i : 0.09	[ : 0.08	= : 0.04	h : 0.04	! : 0.03	# : 0.03	" : 0.03	c : 0.03	b : 0.01	a : 0.01	% : 0.01	' : 0.01	
g : 0.19	d : 0.16	c : 0.16	f : 0.11	i : 0.09	e : 0.08	[ : 0.06	= : 0.04	a : 0.03	h : 0.03	b : 0.01	
c : 0.19	g : 0.17	d : 0.14	f : 0.11	i : 0.09	e : 0.08	w : 0.06	= : 0.04	b : 0.03	h : 0.03	a : 0.01	
c : 0.19	g : 0.17	d : 0.11	w : 0.09	f : 0.09	i : 0.08	e : 0.06	v : 0.06	= : 0.04	b : 0.03	h : 0.03	
u : 0.30	v : 0.19	w : 0.16	g : 0.08	d : 0.06	t : 0.04	= : 0.03	c : 0.03	i : 0.01	y : 0.01	e : 0.01	f : 0.01	h : 0.01	
t : 0.32	u : 0.30	v : 0.19	w : 0.16	y : 0.01	
t : 0.32	u : 0.30	v : 0.19	w : 0.16	y : 0.01	
t : 0.32	u : 0.30	v : 0.19	w : 0.16	y : 0.01	
t : 0.32	u : 0.30	v : 0.19	w : 0.16	y : 0.01	
t : 0.32	u : 0.30	v : 0.19	w : 0.16	y : 0.01	
t : 0.32	u : 0.30	v : 0.19	w : 0.16	y : 0.01	
t : 0.32	u : 0.30	v : 0.19	w : 0.16	y : 0.01	
t : 0.32	u : 0.30	v : 0.19	w : 0.16	y : 0.01	
t : 0.32	u : 0.30	v : 0.19	w : 0.16	y : 0.01	
t : 0.32	u : 0.30	v : 0.19	w : 0.16	y : 0.01	
u : 0.30	t : 0.27	v : 0.19	w : 0.16	d : 0.01	y : 0.01	f : 0.01	b : 0.01	
d : 0.16	g : 0.14	v : 0.12	c : 0.11	f : 0.11	w : 0.09	= : 0.04	b : 0.04	i : 0.04	a : 0.03	e : 0.03	y : 0.01	h : 0.01	
g : 0.17	d : 0.16	c : 0.12	f : 0.11	i : 0.09	e : 0.08	w : 0.06	= : 0.04	] : 0.04	b : 0.03	h : 0.03	y : 0.01	
g : 0.19	d : 0.17	c : 0.17	f : 0.12	e : 0.09	i : 0.09	= : 0.04	h : 0.03	] : 0.01	a : 0.01	y : 0.01	
g : 0.19	d : 0.16	f : 0.12	e : 0.09	i : 0.09	c : 0.06	= : 0.04	] : 0.04	4 : 0.04	2 : 0.03	h : 0.03	5 : 0.01	a : 0.01	y : 0.01	
g : 0.19	f : 0.12	i : 0.11	e : 0.09	c : 0.09	] : 0.08	= : 0.06	4 : 0.06	2 : 0.04	d : 0.03	h : 0.03	5 : 0.01	> : 0.01	a : 0.01	
g : 0.19	f : 0.12	i : 0.11	= : 0.09	c : 0.09	e : 0.08	4 : 0.06	3 : 0.04	h : 0.04	d : 0.03	2 : 0.03	5 : 0.01	: : 0.01	> : 0.01	] : 0.01	
g : 0.20	i : 0.11	c : 0.11	= : 0.09	e : 0.06	4 : 0.06	3 : 0.04	f : 0.04	: : 0.04	h : 0.04	] : 0.04	5 : 0.01	b : 0.01	d : 0.01	> : 0.01	A : 0.01	2 : 0.01	
e : 0.11	i : 0.11	= : 0.09	c : 0.08	: : 0.08	f : 0.08	3 : 0.06	g : 0.06	] : 0.04	d : 0.04	h : 0.04	b : 0.03	2 : 0.03	4 : 0.03	5 : 0.01	> : 0.01	a : 0.01	} : 0.01	
e : 0.14	i : 0.12	= : 0.09	: : 0.08	] : 0.06	f : 0.06	d : 0.06	c : 0.04	h : 0.04	g : 0.04	4 : 0.04	b : 0.03	2 : 0.03	[ : 0.03	a : 0.01	3 : 0.01	> : 0.01	F : 0.01	
e : 0.17	c : 0.11	= : 0.09	f : 0.09	i : 0.08	: : 0.08	d : 0.08	4 : 0.06	b : 0.04	h : 0.03	3 : 0.03	g : 0.03	2 : 0.01	] : 0.01	> : 0.01	F : 0.01	

#score	1448.1974836615782
#seq	62
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_UTR_m2_run1.txt

#BEAR
ccc[ccclllcccccc:EEEEEBB}FFFFFF}ABB}EEEE	chr9:139734826-139735104(+)$1	278	132	172	22.6513
[bb[bbmmmmbb]bbccc:::DDDDYYDDDD}BB}DDDD}	chr22:19418924-19419268(-)$1	344	188	228	26.1284
b[bbbbmmmmbb]bb]bb::DDDDHHHHHHHHKKCCC{CC	chr22:23522678-23522941(+)$1	263	88	128	25.1541

#otherMatches

#Seq PSSM
CUACGAGGAGCUCUAGGCCGGCGUGGGCAGUGGCCGCCCU	chr9:139734826-139735104(+)$1	278	132	172	22.6513
agcggcggcgguggcUCCAUGGCCCGGGCGCGCUGAGGGA	chr22:19418924-19419268(-)$1	344	188	228	26.1284
ggcggcggcggcacggcggcggcggGGCUGUGGGGCGGUG	chr22:23522678-23522941(+)$1	263	88	128	25.1541

#DB
(((.(((...)))))).))))))).)))))).))).))))	chr9:139734826-139735104(+)$1	1	132	172	22.6513
.((.((....)).)))))...))))..)))).)).)))).	chr22:19418924-19419268(-)$1	1	188	228	26.1284
(.((((....)).)).))..((((((((((((..(((.((	chr22:23522678-23522941(+)$1	1	88	128	25.1541

#PSSM
c : 0.33	[ : 0.33	b : 0.33	
c : 0.33	b : 0.33	[ : 0.33	
b : 0.66	c : 0.33	
[ : 0.66	b : 0.33	
b : 0.66	c : 0.33	
b : 0.66	c : 0.33	
m : 0.66	c : 0.33	
m : 0.66	l : 0.33	
m : 0.66	l : 0.33	
m : 0.66	l : 0.33	
b : 0.66	c : 0.33	
b : 0.66	c : 0.33	
] : 0.66	c : 0.33	
b : 0.66	c : 0.33	
b : 0.66	c : 0.33	
c : 0.66	] : 0.33	
: : 0.33	c : 0.33	b : 0.33	
E : 0.33	c : 0.33	b : 0.33	
: : 0.66	E : 0.33	
: : 0.66	E : 0.33	
E : 0.33	: : 0.33	D : 0.33	
D : 0.66	E : 0.33	
D : 0.66	B : 0.33	
D : 0.66	B : 0.33	
} : 0.33	D : 0.33	H : 0.33	
F : 0.33	Y : 0.33	H : 0.33	
F : 0.33	Y : 0.33	H : 0.33	
F : 0.33	D : 0.33	H : 0.33	
F : 0.33	D : 0.33	H : 0.33	
F : 0.33	D : 0.33	H : 0.33	
F : 0.33	D : 0.33	H : 0.33	
} : 0.66	H : 0.33	
A : 0.33	B : 0.33	K : 0.33	
B : 0.66	K : 0.33	
B : 0.33	} : 0.33	C : 0.33	
} : 0.33	D : 0.33	C : 0.33	
E : 0.33	D : 0.33	C : 0.33	
E : 0.33	D : 0.33	{ : 0.33	
E : 0.33	D : 0.33	C : 0.33	
E : 0.33	} : 0.33	C : 0.33	

#score	73.93398246679997
#seq	3
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_UTR_m2_run2.txt

#BEAR
:eeeeeooooooeeeee	chr3:48014352-48014715(-)$1	363	171	188	11.6024
[eeeeeooooooeeeee	chr11:2151459-2151694(-)$1	235	126	143	12.5289
[eeeeeooooooeeeee	chr2:220073412-220073687(+)$1	275	175	192	12.5289
eee!!aooooooa22ee	chr10:52623709-52624007(-)$1	298	30	47	10.1095
ffffffoooooofffff	chr7:2770235-2770503(-)$1	268	47	64	9.9577
[eeeeennnnneeeee]	chr12:54678094-54678326(+)$1	232	107	124	7.6592
[addddoooooodddd]	chr2:242291571-242291823(+)$1	252	209	226	11.5179
#eeeeeooooooeeeee	chrX:118759168-118759462(-)$1	294	48	65	12.4775
ffffffoooooofffff	chr12:98931297-98931549(+)$1	252	119	136	9.9577
f[ddddoooooodddd2	chr12:32520433-32520718(+)$1	285	7	24	11.1762
++ddddoooooodddd>	chr2:182781179-182781456(+)$1	277	166	183	9.8601
ffffffoooooofffff	chr16:2553177-2553468(+)$1	291	50	67	9.9577
!!ddddoooooodddd]	chr6:109003163-109003456(+)$1	293	6	23	11.6972
!!eeeeennnnneeeee	chr10:105358426-105358706(-)$1	280	192	209	7.7415
b!!cccooooooccc22	chr19:37099987-37100304(+)$1	317	32	49	10.2040
dd[cccooooooccc]d	chr3:176741323-176741618(-)$1	295	199	216	10.0501
(eeeeeooooooeeeee	chr6:163986163-163986400(+)$1	237	155	172	11.8748
:eeeeeooooooeeeee	chr2:153499934-153500152(+)$1	218	45	62	11.6024
hhddddoooooodddd6	chr3:56655045-56655288(-)$1	243	40	57	10.2421
ffffffoooooofffff	chr11:118267372-118267619(+)$1	247	81	98	9.9577
""ddddoooooodddd4	chr20:45133724-45134041(-)$1	317	37	54	11.3668
a[ddddoooooodddd]	chr9:36339415-36339663(-)$1	248	154	171	11.5385
:eeeeeooooooeeeee	chr17:43003126-43003412(-)$1	286	2	19	11.6024
ggggggooooooggggg	chr2:190648158-190648442(-)$1	284	195	212	10.4682
:eeeeeooooooeeeee	chr3:37029744-37030059(-)$1	315	37	54	11.6024
[eeeeeooooooeeeee	chr1:156213332-156213619(-)$1	287	194	211	12.5289
ggggggooooooggggg	chr14:53107164-53107474(-)$1	310	247	264	10.4682
d[ddddooooooddddd	chr1:47183757-47184177(-)$1	420	223	240	10.9749
eeee[aooooooa]eee	chr16:68172586-68172888(+)$1	302	115	132	11.1573
!!eeeeennnnneeeee	chr6:163994953-163995201(+)$1	248	136	153	7.7415
:eeeeeooooooeeeee	chr17:4850152-4850409(-)$1	257	182	199	11.6024
!a[cccoooooocccag	chr15:83685778-83686051(-)$1	273	29	46	10.6294
bbddddoooooodddd]	chr3:56655192-56655437(-)$1	245	38	55	10.8254
!!ddddoooooodddd2	chr1:162492352-162492601(+)$1	249	64	81	11.4727
ccccccooooooccc]c	chr12:125585654-125585955(+)$1	301	69	86	10.2387
geeeeeooooooeeeee	chr1:67473473-67473744(-)$1	271	199	216	12.3075
cc[cccooooooccc]c	chr5:148884426-148884669(-)$1	243	30	47	10.3151
#eeeeeooooooeeeee	chrX:53405559-53405834(-)$1	275	63	80	12.4775
feeeeeooooooeeeee	chr10:93622986-93623240(+)$1	254	204	221	12.2380
ffffffoooooofffff	chr14:21927716-21928003(-)$1	287	89	106	9.9577
ggggggooooooggggg	chr19:4423152-4423441(+)$1	289	71	88	10.4682
[eeeeeooooooeeeee	chrX:70794201-70794536(+)$1	335	252	269	12.5289
e!!cccooooooccc22	chr1:28564447-28564719(+)$1	272	18	35	10.2332
:eeeeeooooooeeeee	chr16:69737665-69737887(+)$1	222	92	109	11.6024
eeecccooooooccc]e	chr17:64804150-64804510(+)$1	360	305	322	10.9006
"eeeeeooooooeeeee	chr14:100604074-100604392(+)$1	318	104	121	12.4782
[addddoooooodddd]	chr2:242291638-242291846(+)$1	208	142	159	11.5179
ffffffoooooofffff	chr9:95477119-95477371(-)$1	252	190	207	9.9577
c[ddddoooooodddd]	chr14:23079808-23080125(+)$1	317	31	48	11.4487
b[ddddoooooodddd]	chr21:45880747-45881004(+)$1	257	182	199	11.3211

#otherMatches

#Seq PSSM
AAUUGUUGAAAUAUAAU	chr3:48014352-48014715(-)$1	363	171	188	11.6024
GAGUGGAGAAGGCCACU	chr11:2151459-2151694(-)$1	235	126	143	12.5289
auugagauaauccucag	chr2:220073412-220073687(+)$1	275	175	192	12.5289
auucacaaaugaggaaa	chr10:52623709-52624007(-)$1	298	30	47	10.1095
UCUGUCUUUAAUGACAG	chr7:2770235-2770503(-)$1	268	47	64	9.9577
AUUGCAGUAAUUGUGGA	chr12:54678094-54678326(+)$1	232	107	124	7.6592
GAUGUAGAAAGAUACAC	chr2:242291571-242291823(+)$1	252	209	226	11.5179
UUUGUGUCAAGUCAUAA	chrX:118759168-118759462(-)$1	294	48	65	12.4775
UUAGCCUUUAAUGGUUG	chr12:98931297-98931549(+)$1	252	119	136	9.9577
UAUUGGCAUCAUUCAAG	chr12:32520433-32520718(+)$1	285	7	24	11.1762
cugaucaaagucgauuu	chr2:182781179-182781456(+)$1	277	166	183	9.8601
UUUUGUGUGCAUGCAAA	chr16:2553177-2553468(+)$1	291	50	67	9.9577
AGUAGCAUGGGGGCUAG	chr6:109003163-109003456(+)$1	293	6	23	11.6972
GAGAGGGCCUUUCCCUU	chr10:105358426-105358706(-)$1	280	192	209	7.7415
AGACCCAAAGUAGGGCA	chr19:37099987-37100304(+)$1	317	32	49	10.2040
GAAUAAAUACACUUAAU	chr3:176741323-176741618(-)$1	295	199	216	10.0501
CUGCUGCACCCACAGCA	chr6:163986163-163986400(+)$1	237	155	172	11.8748
CGGUUUUUCUGCGAACC	chr2:153499934-153500152(+)$1	218	45	62	11.6024
UGAAGGAGUCUCCCUUA	chr3:56655045-56655288(-)$1	243	40	57	10.2421
UGAAAUUAUAUUAUUUC	chr11:118267372-118267619(+)$1	247	81	98	9.9577
GUAUAUGCAAGAAUGUU	chr20:45133724-45134041(-)$1	317	37	54	11.3668
GUGUGUGCACUAACAUU	chr9:36339415-36339663(-)$1	248	154	171	11.5385
ACCGGCCCCUCUGCUGG	chr17:43003126-43003412(-)$1	286	2	19	11.6024
GGGGUUAUGAGAAAUUC	chr2:190648158-190648442(-)$1	284	195	212	10.4682
caugguuuccuuaccau	chr3:37029744-37030059(-)$1	315	37	54	11.6024
UAUAGAGAUGAGUCUGU	chr1:156213332-156213619(-)$1	287	194	211	12.5289
CCAAACUCCUCUGUUUG	chr14:53107164-53107474(-)$1	310	247	264	10.4682
UUCCAGUUUCCUCUGGG	chr1:47183757-47184177(-)$1	420	223	240	10.9749
UGUGCCUUCUAUGCCAC	chr16:68172586-68172888(+)$1	302	115	132	11.1573
UAGCCUUUGUUUGAGGC	chr6:163994953-163995201(+)$1	248	136	153	7.7415
AGCCCCCACGGCGGGGU	chr17:4850152-4850409(-)$1	257	182	199	11.6024
CGACUGGGUGAACAGCC	chr15:83685778-83686051(-)$1	273	29	46	10.6294
UGGAUAUAUAGCUAUCA	chr3:56655192-56655437(-)$1	245	38	55	10.8254
CCCUUACCAUUUUAAGA	chr1:162492352-162492601(+)$1	249	64	81	11.4727
AGCCUUGUCUGAGAGUG	chr12:125585654-125585955(+)$1	301	69	86	10.2387
UCUGUUUGAAGUAGUAG	chr1:67473473-67473744(-)$1	271	199	216	12.3075
UUGAUUUCUAAUAAUGA	chr5:148884426-148884669(-)$1	243	30	47	10.3151
CCUGGGCCACAUCCCAG	chrX:53405559-53405834(-)$1	275	63	80	12.4775
UUUACAUUGCUUUGUAA	chr10:93622986-93623240(+)$1	254	204	221	12.2380
AAAAGUCCAAAAAUUUU	chr14:21927716-21928003(-)$1	287	89	106	9.9577
UCAUUUAAUGUAAAAUG	chr19:4423152-4423441(+)$1	289	71	88	10.4682
CACAGUUGUGGUACUGU	chrX:70794201-70794536(+)$1	335	252	269	12.5289
AAAAUGCUAAAACAUGA	chr1:28564447-28564719(+)$1	272	18	35	10.2332
CCAUGUUUAACCAUAUG	chr16:69737665-69737887(+)$1	222	92	109	11.6024
CUGGAAUUUGUUUUCUC	chr17:64804150-64804510(+)$1	360	305	322	10.9006
UGGGGCUCCUCUGUCCC	chr14:100604074-100604392(+)$1	318	104	121	12.4782
GAUGUAGAAAGAUACAC	chr2:242291638-242291846(+)$1	208	142	159	11.5179
GCUGCACAUUCUUGCAG	chr9:95477119-95477371(-)$1	252	190	207	9.9577
GACUCAGUUGAUUGAGC	chr14:23079808-23080125(+)$1	317	31	48	11.4487
AUGCCUGCCCAGAGGCU	chr21:45880747-45881004(+)$1	257	182	199	11.3211

#DB
.(((((......)))))	chr3:48014352-48014715(-)$1	1	171	188	11.6024
.(((((......)))))	chr11:2151459-2151694(-)$1	1	126	143	12.5289
.(((((......)))))	chr2:220073412-220073687(+)$1	1	175	192	12.5289
(((..(......)..))	chr10:52623709-52624007(-)$1	1	30	47	10.1095
((((((......)))))	chr7:2770235-2770503(-)$1	1	47	64	9.9577
.(((((.....))))).	chr12:54678094-54678326(+)$1	1	107	124	7.6592
.(((((......)))).	chr2:242291571-242291823(+)$1	1	209	226	11.5179
.(((((......)))))	chrX:118759168-118759462(-)$1	1	48	65	12.4775
((((((......)))))	chr12:98931297-98931549(+)$1	1	119	136	9.9577
(.((((......)))).	chr12:32520433-32520718(+)$1	1	7	24	11.1762
..((((......)))).	chr2:182781179-182781456(+)$1	1	166	183	9.8601
((((((......)))))	chr16:2553177-2553468(+)$1	1	50	67	9.9577
..((((......)))).	chr6:109003163-109003456(+)$1	1	6	23	11.6972
..(((((.....)))))	chr10:105358426-105358706(-)$1	1	192	209	7.7415
(..(((......)))..	chr19:37099987-37100304(+)$1	1	32	49	10.2040
((.(((......))).)	chr3:176741323-176741618(-)$1	1	199	216	10.0501
.(((((......)))))	chr6:163986163-163986400(+)$1	1	155	172	11.8748
.(((((......)))))	chr2:153499934-153500152(+)$1	1	45	62	11.6024
((((((......)))).	chr3:56655045-56655288(-)$1	1	40	57	10.2421
((((((......)))))	chr11:118267372-118267619(+)$1	1	81	98	9.9577
..((((......)))).	chr20:45133724-45134041(-)$1	1	37	54	11.3668
(.((((......)))).	chr9:36339415-36339663(-)$1	1	154	171	11.5385
.(((((......)))))	chr17:43003126-43003412(-)$1	1	2	19	11.6024
((((((......)))))	chr2:190648158-190648442(-)$1	1	195	212	10.4682
.(((((......)))))	chr3:37029744-37030059(-)$1	1	37	54	11.6024
.(((((......)))))	chr1:156213332-156213619(-)$1	1	194	211	12.5289
((((((......)))))	chr14:53107164-53107474(-)$1	1	247	264	10.4682
(.((((......)))))	chr1:47183757-47184177(-)$1	1	223	240	10.9749
((((.(......).)))	chr16:68172586-68172888(+)$1	1	115	132	11.1573
..(((((.....)))))	chr6:163994953-163995201(+)$1	1	136	153	7.7415
.(((((......)))))	chr17:4850152-4850409(-)$1	1	182	199	11.6024
.(.(((......)))))	chr15:83685778-83686051(-)$1	1	29	46	10.6294
((((((......)))).	chr3:56655192-56655437(-)$1	1	38	55	10.8254
..((((......)))).	chr1:162492352-162492601(+)$1	1	64	81	11.4727
((((((......))).)	chr12:125585654-125585955(+)$1	1	69	86	10.2387
((((((......)))))	chr1:67473473-67473744(-)$1	1	199	216	12.3075
((.(((......))).)	chr5:148884426-148884669(-)$1	1	30	47	10.3151
.(((((......)))))	chrX:53405559-53405834(-)$1	1	63	80	12.4775
((((((......)))))	chr10:93622986-93623240(+)$1	1	204	221	12.2380
((((((......)))))	chr14:21927716-21928003(-)$1	1	89	106	9.9577
((((((......)))))	chr19:4423152-4423441(+)$1	1	71	88	10.4682
.(((((......)))))	chrX:70794201-70794536(+)$1	1	252	269	12.5289
(..(((......)))..	chr1:28564447-28564719(+)$1	1	18	35	10.2332
.(((((......)))))	chr16:69737665-69737887(+)$1	1	92	109	11.6024
((((((......))).)	chr17:64804150-64804510(+)$1	1	305	322	10.9006
.(((((......)))))	chr14:100604074-100604392(+)$1	1	104	121	12.4782
.(((((......)))).	chr2:242291638-242291846(+)$1	1	142	159	11.5179
((((((......)))))	chr9:95477119-95477371(-)$1	1	190	207	9.9577
(.((((......)))).	chr14:23079808-23080125(+)$1	1	31	48	11.4487
(.((((......)))).	chr21:45880747-45881004(+)$1	1	182	199	11.3211

#PSSM
f : 0.16	[ : 0.14	: : 0.12	! : 0.10	e : 0.08	g : 0.08	b : 0.06	c : 0.06	# : 0.04	d : 0.04	" : 0.04	+ : 0.02	( : 0.02	h : 0.02	a : 0.02	
e : 0.40	f : 0.12	! : 0.12	[ : 0.10	a : 0.06	g : 0.06	c : 0.04	+ : 0.02	d : 0.02	h : 0.02	" : 0.02	b : 0.02	
e : 0.44	d : 0.25	f : 0.12	[ : 0.06	g : 0.06	! : 0.04	c : 0.02	
e : 0.40	d : 0.25	c : 0.14	f : 0.12	g : 0.06	! : 0.02	
e : 0.38	d : 0.25	c : 0.14	f : 0.12	g : 0.06	! : 0.02	[ : 0.02	
e : 0.38	d : 0.25	c : 0.14	f : 0.12	g : 0.06	a : 0.04	
o : 0.94	e : 0.04	n : 0.02	
o : 0.94	n : 0.06	
o : 0.94	n : 0.06	
o : 0.94	n : 0.06	
o : 0.94	n : 0.06	
o : 0.94	n : 0.04	e : 0.02	
e : 0.38	d : 0.25	c : 0.14	f : 0.12	g : 0.06	a : 0.04	
e : 0.38	d : 0.25	c : 0.14	f : 0.12	g : 0.06	2 : 0.02	] : 0.02	
e : 0.40	d : 0.25	c : 0.14	f : 0.12	g : 0.06	2 : 0.02	
e : 0.42	d : 0.25	f : 0.12	] : 0.08	g : 0.06	2 : 0.04	a : 0.02	
e : 0.42	] : 0.16	f : 0.12	2 : 0.08	g : 0.08	d : 0.04	c : 0.04	> : 0.02	6 : 0.02	4 : 0.02	

#score	546.6760661929623
#seq	50
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_UTR_m2_run2.txt

#BEAR
####eeeeemmmmeeeee4444	chr6:31508797-31509032(-)$1	235	164	186	8.6820
ddddddddammmma]dddd555	chr17:27047494-27047696(+)$1	202	99	121	9.6989
ddddddddammmma]dddd555	chr17:27047517-27047734(+)$1	217	76	98	9.6989
!!bb[ddddmmmmdddd]bb22	chr17:8076655-8076874(-)$1	219	155	177	11.0611
dddd[ddddmmmmdddd]dddd	chrX:53221351-53221640(-)$1	289	71	93	12.4855
"""bbddddmmmmdddd]bb33	chr2:27884128-27884388(-)$1	260	140	162	11.0536
dddd[cccnnnnnccc]dddd]	chr11:122929941-122930166(-)$1	225	138	160	9.2103
dd"""ddddmmmmdddd]dddd	chr11:62608990-62609215(-)$1	225	52	74	12.6888
eeee[ddddmmmmdddd]eeee	chr18:47017931-47018187(-)$1	256	233	255	11.0488
dddd[cccnnnnnccc]dddd]	chr11:122929975-122930185(-)$1	210	157	179	9.2103
e"""ddddnnnnndddd]eeee	chr11:5269441-5269693(-)$1	252	81	103	10.1221
hh"""ddddmmmmddddhhhhh	chr11:18425140-18425430(+)$1	290	141	163	9.8156
dddd[cccnnnnnccc]dddd]	chr11:122929966-122930175(-)$1	209	147	169	9.2103
ddd!!ddddmmmmdddd22ddd	chr2:27884874-27885155(-)$1	281	95	117	11.6962

#otherMatches

#Seq PSSM
GGCAUCCAUAACGGUGGGAUUA	chr6:31508797-31509032(-)$1	235	164	186	8.6820
UCCUGACACUUGUGAUGUCUUC	chr17:27047494-27047696(+)$1	202	99	121	9.6989
UCCUGACACUUGUGAUGUCUUC	chr17:27047517-27047734(+)$1	217	76	98	9.6989
AACAUAGCUAUGAAGUUCUGAC	chr17:8076655-8076874(-)$1	219	155	177	11.0611
GGUGCUUGUCCUCACAACCACC	chrX:53221351-53221640(-)$1	289	71	93	12.4855
GGAGAGAUACCAAUAUCAUCAA	chr2:27884128-27884388(-)$1	260	140	162	11.0536
AGGAGCUAUGUACUGGGUUUUC	chr11:122929941-122930166(-)$1	225	138	160	9.2103
gaauaggagcuugcuccgucca	chr11:62608990-62609215(-)$1	225	52	74	12.6888
GUGAUCUGUGAAAAUGGUUCGC	chr18:47017931-47018187(-)$1	256	233	255	11.0488
AGGAGCUAUGUACUGGGUUUUC	chr11:122929975-122930185(-)$1	210	157	179	9.2103
GCCCUGUCCUCCAGAUACCACU	chr11:5269441-5269693(-)$1	252	81	103	10.1221
AAGACUCUGCACCCAGAUUUAG	chr11:18425140-18425430(+)$1	290	141	163	9.8156
AGGAGCUAUGUACUGGGUUUUC	chr11:122929966-122930175(-)$1	209	147	169	9.2103
AAUGAAUCUGCAAAGGUGAGUU	chr2:27884874-27885155(-)$1	281	95	117	11.6962

#DB
....(((((....)))))....	chr6:31508797-31509032(-)$1	1	164	186	8.6820
(((((((((....).))))...	chr17:27047494-27047696(+)$1	1	99	121	9.6989
(((((((((....).))))...	chr17:27047517-27047734(+)$1	1	76	98	9.6989
..((.((((....)))).))..	chr17:8076655-8076874(-)$1	1	155	177	11.0611
((((.((((....)))).))))	chrX:53221351-53221640(-)$1	1	71	93	12.4855
...((((((....)))).))..	chr2:27884128-27884388(-)$1	1	140	162	11.0536
((((.(((.....))).)))).	chr11:122929941-122930166(-)$1	1	138	160	9.2103
((...((((....)))).))))	chr11:62608990-62609215(-)$1	1	52	74	12.6888
((((.((((....)))).))))	chr18:47017931-47018187(-)$1	1	233	255	11.0488
((((.(((.....))).)))).	chr11:122929975-122930185(-)$1	1	157	179	9.2103
(...((((.....)))).))))	chr11:5269441-5269693(-)$1	1	81	103	10.1221
((...((((....)))))))))	chr11:18425140-18425430(+)$1	1	141	163	9.8156
((((.(((.....))).)))).	chr11:122929966-122930175(-)$1	1	147	169	9.2103
(((..((((....))))..)))	chr2:27884874-27885155(-)$1	1	95	117	11.6962

#PSSM
d : 0.57	e : 0.14	# : 0.07	! : 0.07	" : 0.07	h : 0.07	
d : 0.57	" : 0.14	# : 0.07	! : 0.07	e : 0.07	h : 0.07	
d : 0.49	" : 0.28	# : 0.07	b : 0.07	e : 0.07	
d : 0.42	" : 0.21	b : 0.14	# : 0.07	e : 0.07	! : 0.07	
[ : 0.42	d : 0.21	" : 0.14	e : 0.07	b : 0.07	! : 0.07	
d : 0.71	c : 0.21	e : 0.07	
d : 0.71	c : 0.21	e : 0.07	
d : 0.71	c : 0.21	e : 0.07	
d : 0.49	n : 0.28	a : 0.14	e : 0.07	
m : 0.71	n : 0.28	
m : 0.71	n : 0.28	
m : 0.71	n : 0.28	
m : 0.71	n : 0.28	
d : 0.57	c : 0.21	a : 0.14	e : 0.07	
d : 0.57	c : 0.21	] : 0.14	e : 0.07	
d : 0.71	c : 0.21	e : 0.07	
d : 0.71	] : 0.21	e : 0.07	
] : 0.42	d : 0.35	e : 0.07	h : 0.07	2 : 0.07	
d : 0.49	b : 0.14	e : 0.14	4 : 0.07	h : 0.07	2 : 0.07	
d : 0.42	5 : 0.14	b : 0.14	e : 0.14	4 : 0.07	h : 0.07	
d : 0.42	5 : 0.14	e : 0.14	4 : 0.07	2 : 0.07	3 : 0.07	h : 0.07	
d : 0.21	] : 0.21	5 : 0.14	e : 0.14	4 : 0.07	2 : 0.07	3 : 0.07	h : 0.07	

#score	145.6826612739285
#seq	14
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_UTR_m2_run2.txt

#BEAR
cccooooooccc	chr11:2152815-2153017(-)$1	202	23	35	12.6117
cccooooooccc	chr11:2152654-2152857(-)$1	203	68	80	12.6117
cccooooooccc	chr11:2152498-2152702(-)$1	204	11	23	12.6117
cccooooooccc	chr11:2152489-2152692(-)$1	203	43	55	12.6117
cccooooooccc	chr19:6663613-6663843(-)$1	230	183	195	12.6117
cccooooooccc	chr11:2152476-2152680(-)$1	204	31	43	12.6117
cccooooooccc	chr11:2152789-2152993(-)$1	204	78	90	12.6117
cccooooooccc	chr12:76442882-76443092(-)$1	210	85	97	12.6117
cccooooooccc	chr12:49976520-49976893(+)$1	373	94	106	12.6117
cccooooooccc	chr11:2152541-2152754(-)$1	213	63	75	12.6117
cccooooooccc	chr11:2152657-2152861(-)$1	204	2	14	12.6117
cccooooooccc	chr11:2159572-2159777(-)$1	205	182	194	12.6117
cccooooooccc	chr2:71653642-71653884(+)$1	242	85	97	12.6117
cccooooooccc	chr11:2154267-2154471(-)$1	204	96	108	12.6117
cccooooooccc	chr11:2153238-2153441(-)$1	203	91	103	12.6117
cccooooooccc	chr11:2153098-2153304(-)$1	206	97	109	12.6117
cccooooooccc	chr9:139734531-139734765(+)$1	234	189	201	12.6117
cccooooooccc	chr11:2152578-2152782(-)$1	204	91	103	12.6117
cccooooooccc	chr11:2152487-2152689(-)$1	202	40	52	12.6117
cccooooooccc	chr11:2153143-2153348(-)$1	205	141	153	12.6117
cccooooooccc	chr11:2152624-2152827(-)$1	203	38	50	12.6117
cccooooooccc	chr11:2152502-2152704(-)$1	202	13	25	12.6117
cccooooooccc	chr11:2154045-2154253(-)$1	208	0	12	12.6117
cccooooooccc	chr11:2152492-2152698(-)$1	206	49	61	12.6117
cccooooooccc	chr11:2152881-2153085(-)$1	204	91	103	12.6117
cccooooooccc	chr11:2152723-2152925(-)$1	202	10	22	12.6117
cccooooooccc	chr16:4740127-4740425(+)$1	298	121	133	12.6117
cccooooooccc	chr11:2153157-2153359(-)$1	202	9	21	12.6117
cccooooooccc	chr11:2152858-2153061(-)$1	203	10	22	12.6117
cccooooooccc	chr16:67209717-67209988(-)$1	271	232	244	12.6117
cccooooooccc	chr11:2152804-2153006(-)$1	202	91	103	12.6117
cccooooooccc	chr11:2153246-2153455(-)$1	209	105	117	12.6117
cccooooooccc	chr11:2152764-2152966(-)$1	202	51	63	12.6117
cccooooooccc	chr11:2153285-2153492(-)$1	207	142	154	12.6117
cccooooooccc	chr11:2153180-2153383(-)$1	203	33	45	12.6117
cccooooooccc	chr11:2152534-2152736(-)$1	202	45	57	12.6117
cccooooooccc	chr11:2152646-2152848(-)$1	202	59	71	12.6117
cccooooooccc	chr11:2153279-2153485(-)$1	206	135	147	12.6117
cccooooooccc	chr11:2153090-2153292(-)$1	202	85	97	12.6117
cccooooooccc	chr11:2153426-2153628(-)$1	202	14	26	12.6117
cccooooooccc	chr11:2152665-2152867(-)$1	202	78	90	12.6117
cccooooooccc	chr11:2152674-2152876(-)$1	202	87	99	12.6117
cccooooooccc	chr11:2153164-2153366(-)$1	202	16	28	12.6117
cccooooooccc	chr11:2152866-2153068(-)$1	202	74	86	12.6117
cccooooooccc	chr11:2152770-2152976(-)$1	206	61	73	12.6117
cccooooooccc	chr11:2152634-2152839(-)$1	205	50	62	12.6117
cccooooooccc	chr11:2151036-2151248(-)$1	212	64	76	12.6117
cccooooooccc	chr11:2152885-2153101(-)$1	216	107	119	12.6117
cccooooooccc	chr11:2152482-2152687(-)$1	205	38	50	12.6117
cccooooooccc	chr11:2153032-2153236(-)$1	204	29	41	12.6117
cccooooooccc	chr19:15383749-15384045(-)$1	296	0	12	12.6117
cccooooooccc	chr11:2152510-2152721(-)$1	211	30	42	12.6117
cccooooooccc	chr11:2152670-2152872(-)$1	202	83	95	12.6117
cccooooooccc	chr11:2152449-2152651(-)$1	202	2	14	12.6117
cccooooooccc	chr12:76443438-76443666(-)$1	228	200	212	12.6117
cccooooooccc	chr11:2153428-2153631(-)$1	203	17	29	12.6117

#otherMatches

#Seq PSSM
gcacacacaugc	chr11:2152815-2153017(-)$1	202	23	35	12.6117
gcacacacaugc	chr11:2152654-2152857(-)$1	203	68	80	12.6117
gcacccaccugc	chr11:2152498-2152702(-)$1	204	11	23	12.6117
CCACAAAAUUGG	chr11:2152489-2152692(-)$1	203	43	55	12.6117
UGUUAUAACACA	chr19:6663613-6663843(-)$1	230	183	195	12.6117
CCACAAAAUUGG	chr11:2152476-2152680(-)$1	204	31	43	12.6117
gcacacacaugc	chr11:2152789-2152993(-)$1	204	78	90	12.6117
GGAAAAUGAUCC	chr12:76442882-76443092(-)$1	210	85	97	12.6117
auacauacauau	chr12:49976520-49976893(+)$1	373	94	106	12.6117
gcacccaccugc	chr11:2152541-2152754(-)$1	213	63	75	12.6117
gcacacacaugc	chr11:2152657-2152861(-)$1	204	2	14	12.6117
UGCCCCGUCGCA	chr11:2159572-2159777(-)$1	205	182	194	12.6117
CUUAACUUAAAG	chr2:71653642-71653884(+)$1	242	85	97	12.6117
GGCCUGCCUGCC	chr11:2154267-2154471(-)$1	204	96	108	12.6117
UGCAUCCCCGCA	chr11:2153238-2153441(-)$1	203	91	103	12.6117
gcacacacaugc	chr11:2153098-2153304(-)$1	206	97	109	12.6117
CCAGGGCUGUGG	chr9:139734531-139734765(+)$1	234	189	201	12.6117
gcacccaccugc	chr11:2152578-2152782(-)$1	204	91	103	12.6117
CCACAAAAUUGG	chr11:2152487-2152689(-)$1	202	40	52	12.6117
gcacacacaugc	chr11:2153143-2153348(-)$1	205	141	153	12.6117
gcacacacaugc	chr11:2152624-2152827(-)$1	203	38	50	12.6117
gcacccaccugc	chr11:2152502-2152704(-)$1	202	13	25	12.6117
GGGCGCCCCCCC	chr11:2154045-2154253(-)$1	208	0	12	12.6117
CCACAAAAUUGG	chr11:2152492-2152698(-)$1	206	49	61	12.6117
gcacacacaugc	chr11:2152881-2153085(-)$1	204	91	103	12.6117
gcacacacaugc	chr11:2152723-2152925(-)$1	202	10	22	12.6117
GCCGCAGAUGGC	chr16:4740127-4740425(+)$1	298	121	133	12.6117
UGCAUCCCCGCA	chr11:2153157-2153359(-)$1	202	9	21	12.6117
gcacacacaugc	chr11:2152858-2153061(-)$1	203	10	22	12.6117
ACCAGGUGAGGU	chr16:67209717-67209988(-)$1	271	232	244	12.6117
gcacacacaugc	chr11:2152804-2153006(-)$1	202	91	103	12.6117
UGCAUCCCCGCA	chr11:2153246-2153455(-)$1	209	105	117	12.6117
gcacacacaugc	chr11:2152764-2152966(-)$1	202	51	63	12.6117
UGCAUCCCCGCA	chr11:2153285-2153492(-)$1	207	142	154	12.6117
UGCAUCCCCGCA	chr11:2153180-2153383(-)$1	203	33	45	12.6117
gcacccaccugc	chr11:2152534-2152736(-)$1	202	45	57	12.6117
gcacacacaugc	chr11:2152646-2152848(-)$1	202	59	71	12.6117
UGCAUCCCCGCA	chr11:2153279-2153485(-)$1	206	135	147	12.6117
gcacacacaugc	chr11:2153090-2153292(-)$1	202	85	97	12.6117
GCACGUCGCUGC	chr11:2153426-2153628(-)$1	202	14	26	12.6117
gcacacacaugc	chr11:2152665-2152867(-)$1	202	78	90	12.6117
gcacacacaugc	chr11:2152674-2152876(-)$1	202	87	99	12.6117
UGCAUCCCCGCA	chr11:2153164-2153366(-)$1	202	16	28	12.6117
gcacacacaugc	chr11:2152866-2153068(-)$1	202	74	86	12.6117
gcacacacaugc	chr11:2152770-2152976(-)$1	206	61	73	12.6117
gcacacacaugc	chr11:2152634-2152839(-)$1	205	50	62	12.6117
AGCAGGAGAGCU	chr11:2151036-2151248(-)$1	212	64	76	12.6117
gcacacacaugc	chr11:2152885-2153101(-)$1	216	107	119	12.6117
CCACAAAAUUGG	chr11:2152482-2152687(-)$1	205	38	50	12.6117
gcacacacaugc	chr11:2153032-2153236(-)$1	204	29	41	12.6117
GGAACUCAGUCC	chr19:15383749-15384045(-)$1	296	0	12	12.6117
gcacccaccugc	chr11:2152510-2152721(-)$1	211	30	42	12.6117
gcacacacaugc	chr11:2152670-2152872(-)$1	202	83	95	12.6117
CCACAAAAUUGG	chr11:2152449-2152651(-)$1	202	2	14	12.6117
GUAUUCCUUUGC	chr12:76443438-76443666(-)$1	228	200	212	12.6117
GCACGUCGCUGC	chr11:2153428-2153631(-)$1	203	17	29	12.6117

#DB
(((......)))	chr11:2152815-2153017(-)$1	1	23	35	12.6117
(((......)))	chr11:2152654-2152857(-)$1	1	68	80	12.6117
(((......)))	chr11:2152498-2152702(-)$1	1	11	23	12.6117
(((......)))	chr11:2152489-2152692(-)$1	1	43	55	12.6117
(((......)))	chr19:6663613-6663843(-)$1	1	183	195	12.6117
(((......)))	chr11:2152476-2152680(-)$1	1	31	43	12.6117
(((......)))	chr11:2152789-2152993(-)$1	1	78	90	12.6117
(((......)))	chr12:76442882-76443092(-)$1	1	85	97	12.6117
(((......)))	chr12:49976520-49976893(+)$1	1	94	106	12.6117
(((......)))	chr11:2152541-2152754(-)$1	1	63	75	12.6117
(((......)))	chr11:2152657-2152861(-)$1	1	2	14	12.6117
(((......)))	chr11:2159572-2159777(-)$1	1	182	194	12.6117
(((......)))	chr2:71653642-71653884(+)$1	1	85	97	12.6117
(((......)))	chr11:2154267-2154471(-)$1	1	96	108	12.6117
(((......)))	chr11:2153238-2153441(-)$1	1	91	103	12.6117
(((......)))	chr11:2153098-2153304(-)$1	1	97	109	12.6117
(((......)))	chr9:139734531-139734765(+)$1	1	189	201	12.6117
(((......)))	chr11:2152578-2152782(-)$1	1	91	103	12.6117
(((......)))	chr11:2152487-2152689(-)$1	1	40	52	12.6117
(((......)))	chr11:2153143-2153348(-)$1	1	141	153	12.6117
(((......)))	chr11:2152624-2152827(-)$1	1	38	50	12.6117
(((......)))	chr11:2152502-2152704(-)$1	1	13	25	12.6117
(((......)))	chr11:2154045-2154253(-)$1	1	0	12	12.6117
(((......)))	chr11:2152492-2152698(-)$1	1	49	61	12.6117
(((......)))	chr11:2152881-2153085(-)$1	1	91	103	12.6117
(((......)))	chr11:2152723-2152925(-)$1	1	10	22	12.6117
(((......)))	chr16:4740127-4740425(+)$1	1	121	133	12.6117
(((......)))	chr11:2153157-2153359(-)$1	1	9	21	12.6117
(((......)))	chr11:2152858-2153061(-)$1	1	10	22	12.6117
(((......)))	chr16:67209717-67209988(-)$1	1	232	244	12.6117
(((......)))	chr11:2152804-2153006(-)$1	1	91	103	12.6117
(((......)))	chr11:2153246-2153455(-)$1	1	105	117	12.6117
(((......)))	chr11:2152764-2152966(-)$1	1	51	63	12.6117
(((......)))	chr11:2153285-2153492(-)$1	1	142	154	12.6117
(((......)))	chr11:2153180-2153383(-)$1	1	33	45	12.6117
(((......)))	chr11:2152534-2152736(-)$1	1	45	57	12.6117
(((......)))	chr11:2152646-2152848(-)$1	1	59	71	12.6117
(((......)))	chr11:2153279-2153485(-)$1	1	135	147	12.6117
(((......)))	chr11:2153090-2153292(-)$1	1	85	97	12.6117
(((......)))	chr11:2153426-2153628(-)$1	1	14	26	12.6117
(((......)))	chr11:2152665-2152867(-)$1	1	78	90	12.6117
(((......)))	chr11:2152674-2152876(-)$1	1	87	99	12.6117
(((......)))	chr11:2153164-2153366(-)$1	1	16	28	12.6117
(((......)))	chr11:2152866-2153068(-)$1	1	74	86	12.6117
(((......)))	chr11:2152770-2152976(-)$1	1	61	73	12.6117
(((......)))	chr11:2152634-2152839(-)$1	1	50	62	12.6117
(((......)))	chr11:2151036-2151248(-)$1	1	64	76	12.6117
(((......)))	chr11:2152885-2153101(-)$1	1	107	119	12.6117
(((......)))	chr11:2152482-2152687(-)$1	1	38	50	12.6117
(((......)))	chr11:2153032-2153236(-)$1	1	29	41	12.6117
(((......)))	chr19:15383749-15384045(-)$1	1	0	12	12.6117
(((......)))	chr11:2152510-2152721(-)$1	1	30	42	12.6117
(((......)))	chr11:2152670-2152872(-)$1	1	83	95	12.6117
(((......)))	chr11:2152449-2152651(-)$1	1	2	14	12.6117
(((......)))	chr12:76443438-76443666(-)$1	1	200	212	12.6117
(((......)))	chr11:2153428-2153631(-)$1	1	17	29	12.6117

#PSSM
c : 1.00	
c : 1.00	
c : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	

#score	706.2607505184001
#seq	56
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_UTR_m3_run1.txt

#BEAR
ccdddd!!bb[bbmmmmbb]bb]dddd22ccc	chrX:152953588-152953898(+)$1	310	138	170	12.8701
ggccc]bb]dddd22ccc]ccc]ccc333ccc	chr10:17271230-17271578(+)$1	348	264	296	13.5248
bb[ccc[fffffflllffffff22ccc]bb]c	chr6:31802962-31803194(+)$1	232	178	210	13.0629
[eeeee[bb[ccclllccc]bb]eeeee====	chr1:27022545-27022809(+)$1	264	157	189	13.4855
dd22ccc]ffffff]ccc]a]a]ccc333eee	chr20:57466610-57466874(+)$1	264	97	129	13.6504
eeeccc[ccc[bblllbb]ccc]ccc333eee	chr17:27047460-27047733(+)$1	273	38	70	17.3584

#otherMatches

#Seq PSSM
ccgccgccgccgccgccgccgcccggccgggc	chrX:152953588-152953898(+)$1	310	138	170	12.8701
GCUCCAGCCGGAGCUACGUGACUACGUCCACC	chr10:17271230-17271578(+)$1	348	264	296	13.5248
CAUGGCCAAGAUUCCUAAUCUUUUGUUCUGUU	chr6:31802962-31803194(+)$1	232	178	210	13.0629
gccgccAGCCCGGAGCCUGAGCCggcggggcg	chr1:27022545-27022809(+)$1	264	157	189	13.4855
ucccggcccGCGUGAGGCCGCCCGCGCccgcc	chr20:57466610-57466874(+)$1	264	97	129	13.6504
CAGUGCUACUUUGUUUCAUAGUCGUAUCCCUG	chr17:27047460-27047733(+)$1	273	38	70	17.3584

#DB
((((((..((.((....)).)).))))..)))	chrX:152953588-152953898(+)$1	1	138	170	12.8701
))))).)).))))..))).))).)))...)))	chr10:17271230-17271578(+)$1	1	264	296	13.5248
((.(((.((((((...))))))..))).)).)	chr6:31802962-31803194(+)$1	1	178	210	13.0629
.(((((.((.(((...))).)).)))))))))	chr1:27022545-27022809(+)$1	1	157	189	13.4855
))..))).)))))).))).).).)))...)))	chr20:57466610-57466874(+)$1	1	97	129	13.6504
((((((.(((.((...)).))).)))...)))	chr17:27047460-27047733(+)$1	1	38	70	17.3584

#PSSM
c : 0.16	g : 0.16	b : 0.16	[ : 0.16	d : 0.16	e : 0.16	
e : 0.33	c : 0.16	g : 0.16	b : 0.16	d : 0.16	
e : 0.33	d : 0.16	c : 0.16	[ : 0.16	2 : 0.16	
c : 0.50	d : 0.16	e : 0.16	2 : 0.16	
c : 0.66	d : 0.16	e : 0.16	
c : 0.50	d : 0.16	] : 0.16	e : 0.16	
[ : 0.50	! : 0.16	b : 0.16	c : 0.16	
b : 0.33	! : 0.16	f : 0.16	] : 0.16	c : 0.16	
b : 0.33	f : 0.33	] : 0.16	c : 0.16	
f : 0.33	b : 0.16	d : 0.16	[ : 0.16	c : 0.16	
[ : 0.33	f : 0.33	d : 0.16	c : 0.16	
b : 0.33	f : 0.33	d : 0.16	c : 0.16	
b : 0.33	f : 0.33	d : 0.16	c : 0.16	
l : 0.50	m : 0.16	2 : 0.16	f : 0.16	
l : 0.50	m : 0.16	2 : 0.16	] : 0.16	
l : 0.50	c : 0.33	m : 0.16	
c : 0.50	m : 0.16	f : 0.16	b : 0.16	
c : 0.50	b : 0.33	f : 0.16	
] : 0.50	b : 0.16	f : 0.16	c : 0.16	
] : 0.33	c : 0.33	f : 0.16	a : 0.16	
b : 0.33	c : 0.33	f : 0.16	] : 0.16	
b : 0.33	c : 0.33	f : 0.16	a : 0.16	
] : 0.83	2 : 0.16	
c : 0.50	d : 0.16	2 : 0.16	e : 0.16	
c : 0.66	d : 0.16	e : 0.16	
c : 0.66	d : 0.16	e : 0.16	
3 : 0.50	d : 0.16	c : 0.16	e : 0.16	
3 : 0.50	2 : 0.16	] : 0.16	e : 0.16	
3 : 0.50	2 : 0.16	b : 0.16	= : 0.16	
c : 0.33	e : 0.33	b : 0.16	= : 0.16	
c : 0.33	e : 0.33	] : 0.16	= : 0.16	
c : 0.50	e : 0.33	= : 0.16	

#score	83.95241815193333
#seq	6
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_CDS_m3_run2.txt

#BEAR
hhhhh"""cccmmmmccc333hhhhhhhh	chr19:2113984-2114234(-)$1	250	157	186	11.9863
Gbb[ccc[cccmmmmccc4444ccc]bb:	chr19:36228590-36228902(+)$1	312	42	71	11.4782
iii$$$$$cccmmmmccc]iiiiiiiii:	chr6:17706350-17706608(-)$1	258	29	58	12.2904
ffff####cccmmmmcccffffff]bb33	chr22:29191897-29192137(-)$1	240	54	83	11.8380
eeeee"""cccmmmmccc]eeeee88888	chr20:45865132-45865418(-)$1	286	149	178	10.7781
gg[dddd[cccmmmmcccddddggggggg	chr19:5925581-5925870(-)$1	289	249	278	12.0499
========cccmmmmccc88888888===	chr19:58899488-58899776(+)$1	288	147	176	10.8114
gggggg!!cccmmmmcccgggggggBB}F	chr1:155233604-155233869(-)$1	265	168	197	10.4611
ccc$$$$$cccmmmmcccccc]ddddbbc	chr11:64534562-64534849(-)$1	287	137	166	11.2622
gg[iiiiiiiiillliiiiiiiii]gggg	chr11:47204177-47204451(-)$1	274	230	259	9.9233
!!eeeeeddddmmmmdddd4444eeeee2	chr19:10472093-10472449(-)$1	356	132	161	10.3082
==========oooooo============F	chr15:90161238-90161547(+)$1	309	194	223	10.2352
a[gggggggccclllccc22ggggggg]a	chr1:36941137-36941447(-)$1	310	157	186	10.6817
iiiiiii[cccmmmmccc]iiiiiiiiiD	chr6:117890749-117891061(-)$1	312	67	96	12.6647
gggggg!!cccmmmmcccggggggg5555	chr20:25478810-25479076(-)$1	266	76	105	10.4051
iiiii####bbnnnnnbb4444iiiiiii	chr21:44479206-44479582(-)$1	376	139	168	10.0967
cc[dddd[cccmmmmcccdddd]ccc444	chr6:133136038-133136278(+)$1	240	63	92	11.6907
d[bb"""ddddmmmmdddd333bbdddd4	chr2:25468065-25468382(-)$1	317	184	213	10.0272
[eeeeea[cccmmmmccc]a4444eeeee	chr8:19701447-19701722(+)$1	275	202	231	13.0405
ggggggeeeeellleeeee333ggggggg	chr1:26597488-26597738(+)$1	250	187	216	8.7425
gggggg"""bbmmmmbbggggggg]ffff	chr20:60736533-60736775(+)$1	242	151	180	11.4307
!!eeeee[cccmmmmccc]eeeee4444e	chr5:170818599-170818824(+)$1	225	100	129	12.2778
ff[ccc[a[bbmmmmbb]accc22fffff	chr2:86272330-86272643(-)$1	313	6	35	10.0027
gggddddddddmmmmdddd4444dddd44	chr12:56565020-56565376(-)$1	356	145	174	10.2577
eeeee[ccc[ammmma]ccc]eeeee>>>	chr10:102740638-102740895(+)$1	257	174	203	10.1262
d[eeeeecccooooooccc333eeeee]d	chr9:35100547-35100866(-)$1	319	276	305	9.9054
gggdddd[cccmmmmccc]dddd]ggggg	chr22:33253228-33253491(+)$1	263	127	156	12.3118
ffff!!a[cccmmmmccca22ffffff]g	chr11:57268400-57268664(-)$1	264	99	128	12.4061
ccc####ddddmmmmdddd4444ccc]a]	chr11:72423488-72423763(-)$1	275	54	83	11.4030
========[bbmmmmbb]===========	chr1:156228845-156229124(-)$1	279	50	79	12.3650
e!!ccc[a[bbmmmmbb]a]ccceeeee:	chr12:7024895-7025107(+)$1	212	95	124	9.9855
%ccc####cccmmmmccc22ccc333hhh	chr4:99996069-99996362(-)$1	293	100	129	12.2063
f[bb####cccooooooccc22bbfffff	chr19:2222436-2222705(+)$1	269	239	268	9.2410
bb!!bbcccbbmmmmbb]ccc4444bb33	chr12:6687152-6687416(-)$1	264	158	187	9.9975
gggggggacccmmmmccc]a22ggggggg	chr19:46519169-46519437(+)$1	268	102	131	13.3862
c!!dddd[cccmmmmccc]dddd]ccc:b	chr19:16535760-16536002(-)$1	242	28	57	11.0099
===========mmmm============::	chr17:7306902-7307182(-)$1	280	66	95	11.0254
ccc$$$$$cccmmmmccc4444ccc22bb	chr10:94452343-94452608(+)$1	265	115	144	12.4146
""cccbb!!ccclllccc22bb]ccc333	chr11:64081437-64081730(+)$1	293	182	211	9.9371
c[ccc[a[cccmmmmccc]a22ccc]ccc	chr12:108082259-108082540(+)$1	281	186	215	13.4433
ffccca[ddddmmmmdddd]a]ccc]fff	chr14:69360235-69360475(-)$1	240	98	127	10.0698
eeeebbbbcccmmmmccc333bb22bb]e	chr20:56137643-56137860(+)$1	217	44	73	10.7646
!!eeeee[cccmmmmccc]eeeee22fff	chr17:7142423-7142673(-)$1	250	119	148	11.8076
!ggggggg!!aooooooa22gggggggee	chr17:72860830-72861046(-)$1	216	156	185	9.2179
!!dddd[a[bbmmmmbb22a]dddd]bb]	chr3:133292993-133293267(+)$1	274	120	149	10.0520
eeee[ccccccmmmmccc]ccc22eeeee	chr20:32258494-32258790(-)$1	296	143	172	11.3493
iii"""a[cccmmmmccc]a55555iiii	chr2:47222147-47222430(+)$1	283	39	68	10.8219
ee"""bb[ccclllccc]bb22eeeee]a	chr2:198367596-198367892(+)$1	296	233	262	9.1776
iieeeee[cccmmmmccc4444eeeee:F	chr9:80912081-80912327(+)$1	246	181	210	12.1316
ggggggg[cccnnnnncccgggggggfff	chr17:79969376-79969630(+)$1	254	214	243	9.6394
[dddd"""cccnnnnnccc333dddd]dd	chr10:104414240-104414528(+)$1	288	124	153	9.7997
iiidddd!!bbmmmmbb333dddd22iii	chr19:49992988-49993211(+)$1	223	135	164	10.9842
gggggg!!cccmmmmccc4444ggggggg	chr2:74655405-74655638(-)$1	233	131	160	14.5911
gggggg"""bbmmmmbb]ggggggg:ggg	chr2:219266334-219266561(+)$1	227	113	142	10.8801
cc"""ffffffmmmmffffff4444ccc3	chr16:27500784-27501037(-)$1	253	201	230	9.6406

#otherMatches

#Seq PSSM
GCCGUGAACUCCCAGGAGACAGCGGUGAG	chr19:2113984-2114234(-)$1	250	157	186	11.9863
CAGGUCAACCAGGUAUGGAGUGUGAGCUG	chr19:36228590-36228902(+)$1	312	42	71	11.4782
GGCAAGAUCCGGACGCGGCGUUGCCACCA	chr6:17706350-17706608(-)$1	258	29	58	12.2904
AGAACAUCUCCCCAUGGAUUCUGGCGGUA	chr22:29191897-29192137(-)$1	240	54	83	11.8380
CCUUCCUAGCUGUCCAGCAGAAGGAGAUC	chr20:45865132-45865418(-)$1	286	149	178	10.7781
CAGCCUGGCAUGGCGAUGCAGGUGGCCGC	chr19:5925581-5925870(-)$1	289	249	278	12.0499
CUUCCUGGCUGGGGGCGGACAUUAUUCCA	chr19:58899488-58899776(+)$1	288	147	176	10.8114
AGUCACUUCCUUCUUAGGGUGGUUUGCCC	chr1:155233604-155233869(-)$1	265	168	197	10.4611
GGAAGUACGCCUGUGGGCUCUGGGGUCUA	chr11:64534562-64534849(-)$1	287	137	166	11.2622
AGCAGCUGGGUCCUGGGCUCAGCUACUUG	chr11:47204177-47204451(-)$1	274	230	259	9.9233
AGGGGUCGGCUUUGCAGCCACCUGACCUG	chr19:10472093-10472449(-)$1	356	132	161	10.3082
AAGGAGAUGGUGAGUGUUAUCUCUUUUUG	chr15:90161238-90161547(+)$1	309	194	223	10.2352
UUCUCUUCCACCCCAGGUCUGGAGGAGUG	chr1:36941137-36941447(-)$1	310	157	186	10.6817
GAAAUAUAUUUUUAAGAAAAUAUUUUAUC	chr6:117890749-117891061(-)$1	312	67	96	12.6647
CAGGCUUGCUGCUUCCAGAGCCUGGACUU	chr20:25478810-25479076(-)$1	266	76	105	10.4051
CGGGGACUCGGUGACUCCCCCAUCCCGCA	chr21:44479206-44479582(-)$1	376	139	168	10.0967
GCGUUUAAGCAUUGCUGCUGGAGGUGUAA	chr6:133136038-133136278(+)$1	240	63	92	11.6907
UCUGCAUCUCCUGUGGGAGCCUCAAUGUU	chr2:25468065-25468382(-)$1	317	184	213	10.0272
CAAGAGUGGCCACGGGGCGAGAAUCUUUU	chr8:19701447-19701722(+)$1	275	202	231	13.0405
AAUUCUUGGCUUUGGGCUAUCUAGGAUUU	chr1:26597488-26597738(+)$1	250	187	216	8.7425
GCAGCCCUUGGGCAGCCGGCUGCCAUGGU	chr20:60736533-60736775(+)$1	242	151	180	11.4307
UCCCUUCUAGGUUUCCCUUGGGGGCUUUG	chr5:170818599-170818824(+)$1	225	100	129	12.2778
CUAUUGUAGCUGUCGAGGUCAAAAAGUCC	chr2:86272330-86272643(-)$1	313	6	35	10.0027
UUCUGGGUCUUGCAGAGGAGUUCUCCAAA	chr12:56565020-56565376(-)$1	356	145	174	10.2577
UAGCUACUGGGGGAGUGCAGGGGCUAGUU	chr10:102740638-102740895(+)$1	257	174	203	10.1262
GAGCUCUCUGAGGACCCAGCAUAGAGCAC	chr9:35100547-35100866(-)$1	319	276	305	9.9054
CAACUCUAGCUUCUAGGCCAGGGUUUGGC	chr22:33253228-33253491(+)$1	263	127	156	12.3118
GGGGGGGUGCUCACAGGCCAACCCCUCGC	chr11:57268400-57268664(-)$1	264	99	128	12.4061
GUCGGGGCUGUGUGGACAGAGGGGGCGUG	chr11:72423488-72423763(-)$1	275	54	83	11.4030
UGUUGGCUGAGGUGGCUGGGCCAGCAGGG	chr1:156228845-156229124(-)$1	279	50	79	12.3650
GCCAUCAUGUCCAUAGAGAAGAUCUGGGC	chr12:7024895-7025107(+)$1	212	95	124	9.9855
AGCAGUUGUUCUCAGGAAAAUGCACUGAC	chr4:99996069-99996362(-)$1	293	100	129	12.2063
gaucacaagaucaggacaucaagaccauc	chr19:2222436-2222705(+)$1	269	239	268	9.2410
CCAAGAAGACUUAUGAGAUCUGGCAUCGA	chr12:6687152-6687416(-)$1	264	158	187	9.9975
GGGGCGGGCGGGAAGCUGACAGCUGCCUC	chr19:46519169-46519437(+)$1	268	102	131	13.3862
UCCACGCCGUCCCACGGCAGCGUCAGCAG	chr19:16535760-16536002(-)$1	242	28	57	11.0099
GCGGGGGGGGGGGUGCCCUUUCUCGCCAA	chr17:7306902-7307182(-)$1	280	66	95	11.0254
GUCAAAACCUGGUUUCAGAAUCGACGCGC	chr10:94452343-94452608(+)$1	265	115	144	12.4146
GUGAGUGGACUCGGGGAGGACAGCUCUGG	chr11:64081437-64081730(+)$1	293	182	211	9.9371
CAUGCAGAGUGCACGCACCCAGGCACGCC	chr12:108082259-108082540(+)$1	281	186	215	13.4433
AGUGAUGUGGGUACCCCCGGGUUCACCUG	chr14:69360235-69360475(-)$1	240	98	127	10.0698
AAUGCUGGUCGUGUUCGAAGUCCAAGGUC	chr20:56137643-56137860(+)$1	217	44	73	10.7646
GACCGGUGCAGAGCGCUGAGCCGGCGGGG	chr17:7142423-7142673(-)$1	250	119	148	11.8076
AAGGGGUUGGGGUGGGGCAGAGCCCCUGG	chr17:72860830-72861046(-)$1	216	156	185	9.2179
AAGGCUGUGACGAAGGUGAGGGGCCGGGA	chr3:133292993-133293267(+)$1	274	120	149	10.0520
AGGGUCAGGGAUACCUCCUCUGCUCCCUG	chr20:32258494-32258790(-)$1	296	143	172	11.3493
CUCUGGGGCAGAAGGCUGGCAUGGUGGGU	chr2:47222147-47222430(+)$1	283	39	68	10.8219
CCAAAGUAGUUCUAGAUGACAAGGUGUGU	chr2:198367596-198367892(+)$1	296	233	262	9.1776
GUGGCAGUCGGAUUCCCGCUCCCUGCCUU	chr9:80912081-80912327(+)$1	246	181	210	12.1316
GCAUCUGUGGCCUCCCGCCCAGGUGCCUC	chr17:79969376-79969630(+)$1	254	214	243	9.6394
UGGAGCCACAGUCCCUCUGAUACUCCCAC	chr10:104414240-104414528(+)$1	288	124	153	9.7997
UCGAGGCCAUCUCCUGGGCCGCCUGGCGG	chr19:49992988-49993211(+)$1	223	135	164	10.9842
AGAACUGGGCACAAGUGCAUGGAGUUCUG	chr2:74655405-74655638(-)$1	233	131	160	14.5911
CAGGUGGGGCCACGGGGGCACCUGGACUC	chr2:219266334-219266561(+)$1	227	113	142	10.8801
GAUGUCAGGCCAGACGGCCUGUGUCUCCG	chr16:27500784-27501037(-)$1	253	201	230	9.6406

#DB
(((((...(((....)))...))))))))	chr19:2113984-2114234(-)$1	1	157	186	11.9863
(((.(((.(((....)))....))).)).	chr19:36228590-36228902(+)$1	1	42	71	11.4782
(((.....(((....))).))))))))).	chr6:17706350-17706608(-)$1	1	29	58	12.2904
((((....(((....))))))))).))..	chr22:29191897-29192137(-)$1	1	54	83	11.8380
(((((...(((....))).))))).....	chr20:45865132-45865418(-)$1	1	149	178	10.7781
((.((((.(((....))))))))))))))	chr19:5925581-5925870(-)$1	1	249	278	12.0499
(((((((((((....)))........)))	chr19:58899488-58899776(+)$1	1	147	176	10.8114
((((((..(((....)))))))))))).)	chr1:155233604-155233869(-)$1	1	168	197	10.4611
(((.....(((....)))))).)))))))	chr11:64534562-64534849(-)$1	1	137	166	11.2622
((.(((((((((...))))))))).))))	chr11:47204177-47204451(-)$1	1	230	259	9.9233
..(((((((((....))))....))))).	chr19:10472093-10472449(-)$1	1	132	161	10.3082
((((((((((......)))))))))))))	chr15:90161238-90161547(+)$1	1	194	223	10.2352
(.((((((((((...)))..))))))).)	chr1:36941137-36941447(-)$1	1	157	186	10.6817
(((((((.(((....))).)))))))))(	chr6:117890749-117891061(-)$1	1	67	96	12.6647
((((((..(((....))))))))))....	chr20:25478810-25479076(-)$1	1	76	105	10.4051
(((((....((.....))....)))))))	chr21:44479206-44479582(-)$1	1	139	168	10.0967
((.((((.(((....))))))).)))...	chr6:133136038-133136278(+)$1	1	63	92	11.6907
(.((...((((....))))...)))))).	chr2:25468065-25468382(-)$1	1	184	213	10.0272
.((((((.(((....))).)....)))))	chr8:19701447-19701722(+)$1	1	202	231	13.0405
(((((((((((...)))))...)))))))	chr1:26597488-26597738(+)$1	1	187	216	8.7425
((((((...((....))))))))).))))	chr20:60736533-60736775(+)$1	1	151	180	11.4307
..(((((.(((....))).)))))....)	chr5:170818599-170818824(+)$1	1	100	129	12.2778
((.(((.(.((....)).))))..)))))	chr2:86272330-86272643(-)$1	1	6	35	10.0027
(((((((((((....))))....))))..	chr12:56565020-56565376(-)$1	1	145	174	10.2577
(((((.(((.(....).))).)))))...	chr10:102740638-102740895(+)$1	1	174	203	10.1262
(.((((((((......)))...))))).)	chr9:35100547-35100866(-)$1	1	276	305	9.9054
(((((((.(((....))).)))).)))))	chr22:33253228-33253491(+)$1	1	127	156	12.3118
((((..(.(((....))))..)))))).)	chr11:57268400-57268664(-)$1	1	99	128	12.4061
(((....((((....))))....))).).	chr11:72423488-72423763(-)$1	1	54	83	11.4030
((((((((.((....)).)))))))))))	chr1:156228845-156229124(-)$1	1	50	79	12.3650
(..(((.(.((....)).).)))))))).	chr12:7024895-7025107(+)$1	1	95	124	9.9855
.(((....(((....)))..)))...)))	chr4:99996069-99996362(-)$1	1	100	129	12.2063
(.((....(((......)))..)))))))	chr19:2222436-2222705(+)$1	1	239	268	9.2410
((..(((((((....)).)))....))..	chr12:6687152-6687416(-)$1	1	158	187	9.9975
(((((((((((....))).)..)))))))	chr19:46519169-46519437(+)$1	1	102	131	13.3862
(..((((.(((....))).)))).))).(	chr19:16535760-16536002(-)$1	1	28	57	11.0099
(((((((((((....))))))))))))..	chr17:7306902-7307182(-)$1	1	66	95	11.0254
(((.....(((....)))....)))..))	chr10:94452343-94452608(+)$1	1	115	144	12.4146
..(((((..(((...)))..)).)))...	chr11:64081437-64081730(+)$1	1	182	211	9.9371
(.(((.(.(((....))).)..))).)))	chr12:108082259-108082540(+)$1	1	186	215	13.4433
((((((.((((....)))).).))).)))	chr14:69360235-69360475(-)$1	1	98	127	10.0698
(((((((((((....)))...))..)).)	chr20:56137643-56137860(+)$1	1	44	73	10.7646
..(((((.(((....))).)))))..)))	chr17:7142423-7142673(-)$1	1	119	148	11.8076
.(((((((..(......)..)))))))))	chr17:72860830-72861046(-)$1	1	156	185	9.2179
..((((.(.((....))..).)))).)).	chr3:133292993-133293267(+)$1	1	120	149	10.0520
((((.((((((....))).)))..)))))	chr20:32258494-32258790(-)$1	1	143	172	11.3493
(((...(.(((....))).).....))))	chr2:47222147-47222430(+)$1	1	39	68	10.8219
((...((.(((...))).))..))))).)	chr2:198367596-198367892(+)$1	1	233	262	9.1776
))(((((.(((....)))....))))).)	chr9:80912081-80912327(+)$1	1	181	210	12.1316
(((((((.(((.....)))))))))))))	chr17:79969376-79969630(+)$1	1	214	243	9.6394
.((((...(((.....)))...)))).))	chr10:104414240-104414528(+)$1	1	124	153	9.7997
(((((((..((....))...))))..)))	chr19:49992988-49993211(+)$1	1	135	164	10.9842
((((((..(((....)))....)))))))	chr2:74655405-74655638(-)$1	1	131	160	14.5911
((((((...((....)).))))))).(((	chr2:219266334-219266561(+)$1	1	113	142	10.8801
((...((((((....))))))....))).	chr16:27500784-27501037(-)$1	1	201	230	9.6406

#PSSM
g : 0.21	c : 0.12	i : 0.10	e : 0.10	f : 0.09	! : 0.09	= : 0.07	d : 0.03	[ : 0.03	h : 0.01	G : 0.01	a : 0.01	% : 0.01	b : 0.01	" : 0.01	
g : 0.23	i : 0.10	e : 0.10	c : 0.10	! : 0.10	[ : 0.09	f : 0.07	= : 0.07	b : 0.03	h : 0.01	" : 0.01	d : 0.01	
g : 0.21	e : 0.18	c : 0.12	i : 0.09	[ : 0.07	= : 0.07	b : 0.05	! : 0.05	f : 0.03	d : 0.03	" : 0.03	h : 0.01	
e : 0.18	g : 0.18	d : 0.14	c : 0.10	= : 0.07	$ : 0.05	i : 0.05	" : 0.05	f : 0.03	b : 0.03	h : 0.01	[ : 0.01	# : 0.01	! : 0.01	
g : 0.18	e : 0.14	d : 0.14	c : 0.10	# : 0.07	= : 0.07	" : 0.07	$ : 0.05	i : 0.05	b : 0.03	h : 0.01	! : 0.01	[ : 0.01	
g : 0.18	d : 0.12	e : 0.10	" : 0.09	# : 0.09	c : 0.07	= : 0.07	b : 0.07	$ : 0.05	i : 0.03	[ : 0.03	! : 0.01	a : 0.01	f : 0.01	
" : 0.10	d : 0.10	e : 0.10	# : 0.09	c : 0.07	= : 0.07	g : 0.07	a : 0.07	[ : 0.07	$ : 0.05	! : 0.05	b : 0.05	i : 0.03	f : 0.01	
[ : 0.27	" : 0.09	! : 0.09	d : 0.09	# : 0.07	= : 0.07	a : 0.07	c : 0.07	$ : 0.05	g : 0.03	i : 0.01	e : 0.01	b : 0.01	f : 0.01	
c : 0.61	d : 0.09	[ : 0.07	! : 0.05	= : 0.03	" : 0.03	i : 0.01	g : 0.01	# : 0.01	e : 0.01	f : 0.01	
c : 0.61	b : 0.16	d : 0.09	= : 0.03	i : 0.01	e : 0.01	[ : 0.01	! : 0.01	f : 0.01	
c : 0.60	b : 0.16	d : 0.09	o : 0.03	a : 0.03	i : 0.01	e : 0.01	= : 0.01	f : 0.01	
m : 0.78	o : 0.07	n : 0.05	c : 0.03	l : 0.03	i : 0.01	
m : 0.78	l : 0.09	o : 0.07	n : 0.05	
m : 0.78	l : 0.09	o : 0.07	n : 0.05	
m : 0.78	o : 0.07	l : 0.05	n : 0.05	e : 0.01	c : 0.01	
c : 0.54	b : 0.14	d : 0.09	o : 0.07	n : 0.05	i : 0.01	e : 0.01	a : 0.01	= : 0.01	f : 0.01	
c : 0.60	b : 0.16	d : 0.09	= : 0.03	o : 0.03	i : 0.01	e : 0.01	] : 0.01	f : 0.01	
c : 0.61	] : 0.10	d : 0.09	= : 0.03	i : 0.01	b : 0.01	e : 0.01	g : 0.01	a : 0.01	2 : 0.01	3 : 0.01	f : 0.01	
] : 0.21	d : 0.12	c : 0.12	4 : 0.09	2 : 0.09	g : 0.07	3 : 0.05	= : 0.05	a : 0.05	f : 0.03	8 : 0.01	i : 0.01	e : 0.01	b : 0.01	
4 : 0.14	3 : 0.12	c : 0.10	g : 0.09	2 : 0.09	a : 0.09	d : 0.07	i : 0.05	e : 0.05	= : 0.05	f : 0.03	] : 0.03	8 : 0.01	b : 0.01	
4 : 0.16	g : 0.12	3 : 0.10	c : 0.10	d : 0.09	2 : 0.09	i : 0.05	e : 0.05	= : 0.05	f : 0.03	] : 0.03	8 : 0.01	b : 0.01	a : 0.01	5 : 0.01	
4 : 0.20	g : 0.12	d : 0.10	e : 0.07	3 : 0.07	c : 0.07	2 : 0.07	i : 0.05	= : 0.05	f : 0.03	] : 0.03	b : 0.03	h : 0.01	8 : 0.01	5 : 0.01	
g : 0.20	e : 0.12	c : 0.10	d : 0.10	4 : 0.10	i : 0.07	= : 0.05	b : 0.05	f : 0.03	] : 0.03	2 : 0.03	h : 0.01	8 : 0.01	5 : 0.01	
g : 0.20	e : 0.16	c : 0.12	d : 0.09	i : 0.07	= : 0.05	4 : 0.05	2 : 0.05	f : 0.03	b : 0.03	] : 0.03	h : 0.01	8 : 0.01	3 : 0.01	5 : 0.01	
g : 0.20	c : 0.14	e : 0.14	d : 0.09	i : 0.05	] : 0.05	= : 0.05	4 : 0.05	f : 0.05	2 : 0.05	8 : 0.03	h : 0.01	3 : 0.01	5 : 0.01	
g : 0.16	e : 0.14	c : 0.09	] : 0.07	i : 0.07	d : 0.07	f : 0.07	b : 0.05	= : 0.05	2 : 0.05	8 : 0.03	h : 0.01	B : 0.01	5 : 0.01	4 : 0.01	3 : 0.01	: : 0.01	
g : 0.16	e : 0.12	f : 0.12	b : 0.10	i : 0.09	= : 0.07	c : 0.05	h : 0.03	4 : 0.03	d : 0.03	] : 0.03	8 : 0.01	B : 0.01	5 : 0.01	> : 0.01	2 : 0.01	3 : 0.01	
g : 0.12	f : 0.10	i : 0.09	e : 0.09	] : 0.09	b : 0.07	3 : 0.05	= : 0.05	4 : 0.05	: : 0.05	h : 0.03	d : 0.03	c : 0.03	8 : 0.01	} : 0.01	5 : 0.01	> : 0.01	a : 0.01	
g : 0.14	f : 0.10	e : 0.09	: : 0.07	3 : 0.07	F : 0.05	i : 0.05	4 : 0.05	h : 0.03	= : 0.03	c : 0.03	a : 0.03	d : 0.03	] : 0.03	b : 0.03	8 : 0.01	2 : 0.01	D : 0.01	5 : 0.01	> : 0.01	

#score	606.8349170102001
#seq	55
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_transcript_m3_run1.txt

#BEAR
ffffffqqqqqqqqffff	chr15:101831983-101832239(-)$1	256	15	33	12.3428
!eeeeeqqqqqqqqeeee	chr2:175976098-175976372(-)$1	274	190	208	14.1020
ffffffqqqqqqqqffff	chr19:3977635-3977879(-)$1	244	193	211	12.3428
cc[cccqqqqqqqqccc]	chr3:9476491-9476749(+)$1	258	92	110	13.8595
C:ddddqqqqqqqqdddd	chr11:121875028-121875257(+)$1	229	21	39	13.1525
ffffffqqqqqqqqffff	chrX:151139437-151139690(-)$1	253	33	51	12.3428
::ddddqqqqqqqqdddd	chr11:755953-756230(+)$1	277	154	172	13.3526
&&&cccqqqqqqqqcccd	chr12:123875252-123875513(+)$1	261	82	100	12.5022
::ddddqqqqqqqqdddd	chr21:17191090-17191347(+)$1	257	170	188	13.3526
!!ddddqqqqqqqqdddd	chr1:46769420-46769688(+)$1	268	4	22	14.9963
[eeeeeqqqqqqqqeeee	chr3:196229549-196229806(-)$1	257	197	215	14.0159
##ddddqqqqqqqqdddd	chr1:33478584-33478882(-)$1	298	77	95	14.9001
""ddddqqqqqqqqdddd	chr21:33073116-33073380(-)$1	264	50	68	14.9085
ffffffqqqqqqqqffff	chr3:44856494-44856761(+)$1	267	174	192	12.3428
b"""bbqqqqqqqqbb33	chrX:70757846-70758122(+)$1	276	178	196	12.4487
ccddddqqqqqqqqdddd	chr16:720283-720560(+)$1	277	23	41	14.5878
::ddddqqqqqqqqdddd	chr11:9598135-9598386(+)$1	251	157	175	13.3526
ggg[bbqqqqqqqqbb]g	chr1:19481225-19481487(-)$1	262	106	124	12.5800
deeeeeqqqqqqqqeeee	chr11:122928798-122929033(-)$1	235	173	191	13.8152
:eeeeeqqqqqqqqeeee	chr7:42974664-42974963(+)$1	299	15	33	13.3266
ee[cccqqqqqqqqccce	chr9:97218542-97218798(+)$1	256	3	21	13.9345
FFddddqqqqqqqqdddd	chr5:137894029-137894310(-)$1	281	34	52	14.0940
""ddddqqqqqqqqdddd	chr7:156754880-156755129(+)$1	249	81	99	14.9085
!!ddddqqqqqqqqdddd	chr12:123060377-123060658(+)$1	281	212	230	14.9963
eee!!aqqqqqqqqa22e	chr1:207940466-207940744(+)$1	278	246	264	12.8689
ggggggqqqqqqqqgggg	chr11:61578048-61578294(-)$1	246	36	54	13.2974
!a[cccqqqqqqqqccc]	chr5:43313263-43313524(-)$1	261	84	102	14.1439
!eeeeeqqqqqqqqeeee	chr19:15508343-15508601(-)$1	258	200	218	14.1020
ee!!bbqqqqqqqqbb]e	chr12:112845844-112846115(-)$1	271	194	212	12.8000
eeee[aqqqqqqqqa]ee	chr5:78915839-78916089(+)$1	250	43	61	13.3736
ddd[bbqqqqqqqqbb22	chr1:145440460-145440708(+)$1	248	214	232	12.1539
ee!!bbqqqqqqqqbb22	chr1:212240160-212240420(+)$1	260	155	173	12.3321
!a[cccqqqqqqqqccc]	chr1:6711406-6711664(-)$1	258	204	222	14.1439
::ddddqqqqqqqqdddd	chr10:62544547-62544801(+)$1	254	199	217	13.3526
dd!!bbqqqqqqqqbb44	chr20:45985188-45985477(-)$1	289	262	280	12.4909
ffddddqqqqqqqqdddd	chr19:39125685-39125935(+)$1	250	51	69	14.4466
f[ddddqqqqqqqqdddd	chrX:135962550-135962832(-)$1	282	198	216	14.6460
ggggggqqqqqqqqgggg	chr1:113162436-113162683(+)$1	247	156	174	13.2974
iiiiiiqqqqqqqqiiii	chr6:147581812-147582099(+)$1	287	261	279	13.1625
$$ddddqqqqqqqqdddd	chr11:587384-587659(+)$1	275	112	130	14.5912
d[ddddqqqqqqqqdddd	chr1:23647835-23648093(-)$1	258	224	242	14.6649
!!ddddqqqqqqqqdddd	chrX:151130701-151130965(-)$1	264	57	75	14.9963
ggggggqqqqqqqqgggg	chr1:19430368-19430619(-)$1	251	154	172	13.2974
$$ddddqqqqqqqqdddd	chr9:134022899-134023150(+)$1	251	91	109	14.5912
dd[cccqqqqqqqqcccd	chr2:101910298-101910546(-)$1	248	39	57	13.8117
ceeeeeqqqqqqqqeeee	chr3:13393169-13393452(-)$1	283	70	88	13.9021
:eeeeeqqqqqqqqeeee	chr13:92003231-92003448(+)$1	217	158	176	13.3266
deeeeeqqqqqqqqeeee	chr9:123628946-123629218(-)$1	272	162	180	13.8152
::ddddqqqqqqqqdddd	chr1:145440785-145440993(+)$1	208	111	129	13.3526
''ddddqqqqqqqqdddd	chr16:31201649-31201908(+)$1	259	126	144	13.9171
e[ddddqqqqqqqqdddd	chr11:591408-591698(+)$1	290	123	141	14.6796
ggggggqqqqqqqqgggg	chr11:62620112-62620345(-)$1	233	65	83	13.2974
HHddddqqqqqqqqdddd	chr12:104327995-104328296(+)$1	301	127	145	13.7266
bb[cccqqqqqqqqccc]	chr19:54705078-54705289(+)$1	211	150	168	13.6031
bb[cccqqqqqqqqccc]	chr1:160276747-160277023(-)$1	276	123	141	13.6031
:eeeeeqqqqqqqqeeee	chr6:147685227-147685488(+)$1	261	0	18	13.3266
ff[cccqqqqqqqqcccf	chr7:44839005-44839293(+)$1	288	249	267	13.5694
d[ddddqqqqqqqqdddd	chr10:74789820-74790101(-)$1	281	133	151	14.6649
::ddddqqqqqqqqdddd	chr6:53160264-53160502(-)$1	238	185	203	13.3526
[eeeeeqqqqqqqqeeee	chr3:3188236-3188507(+)$1	271	229	247	14.0159
eeecccqqqqqqqqccc]	chr16:24809213-24809458(+)$1	245	76	94	13.8313
$eeeeeqqqqqqqqeeee	chr20:5555881-5556128(-)$1	247	59	77	13.9205
dd[cccqqqqqqqqccc2	chr17:40659575-40659821(+)$1	246	84	102	13.4739

#otherMatches

#Seq PSSM
UCAGGCUCUGCCCUGUCU	chr15:101831983-101832239(-)$1	256	15	33	12.3428
CUGUUUUAUACUAUAGAU	chr2:175976098-175976372(-)$1	274	190	208	14.1020
ACCUGCAGGACUUGGCAG	chr19:3977635-3977879(-)$1	244	193	211	12.3428
UAGGUCCACAAUUUGACA	chr3:9476491-9476749(+)$1	258	92	110	13.8595
CCCUGAUAGAAAUUUCAG	chr11:121875028-121875257(+)$1	229	21	39	13.1525
cugccucccagcaaaggc	chrX:151139437-151139690(-)$1	253	33	51	12.3428
AGGGGGGAAAAAAACCCU	chr11:755953-756230(+)$1	277	154	172	13.3526
UAAGCUUUUGAAAUGGCC	chr12:123875252-123875513(+)$1	261	82	100	12.5022
AUUGAGAGAGAAUACUCA	chr21:17191090-17191347(+)$1	257	170	188	13.3526
AACCGUAGCCAGACAUGG	chr1:46769420-46769688(+)$1	268	4	22	14.9963
AGGGGGUUUAUGGGUCCC	chr3:196229549-196229806(-)$1	257	197	215	14.0159
AAAGACUUGGUUAUGUUU	chr1:33478584-33478882(-)$1	298	77	95	14.9001
AACAGAAAACUGCAUUUG	chr21:33073116-33073380(-)$1	264	50	68	14.9085
aauaaaaaagauaauuua	chr3:44856494-44856761(+)$1	267	174	192	12.3428
AAAAGUUUAGAAAUGCGU	chrX:70757846-70758122(+)$1	276	178	196	12.4487
GCCGUGCUCCCCAUCAUG	chr16:720283-720560(+)$1	277	23	41	14.5878
CAUCUCUAACUUUUGAGA	chr11:9598135-9598386(+)$1	251	157	175	13.3526
GCAAUGUCCACAUUCAAU	chr1:19481225-19481487(-)$1	262	106	124	12.5800
ugaaugguccaaaacauu	chr11:122928798-122929033(-)$1	235	173	191	13.8152
CCAUUGAAGUUAACCGGU	chr7:42974664-42974963(+)$1	299	15	33	13.3266
GGCUGCCAUGUCCAGCAU	chr9:97218542-97218798(+)$1	256	3	21	13.9345
CUGGAGACAACAAACUCC	chr5:137894029-137894310(-)$1	281	34	52	14.0940
CAAGGAACUUUCAAUUCU	chr7:156754880-156755129(+)$1	249	81	99	14.9085
UGUUCAGUUAUUUAUGAG	chr12:123060377-123060658(+)$1	281	212	230	14.9963
ACAUAAAAUUCUGCUGUU	chr1:207940466-207940744(+)$1	278	246	264	12.8689
UUCUUCUUUGCCUUGGGG	chr11:61578048-61578294(-)$1	246	36	54	13.2974
GGGAGUAGAACUGGGCUG	chr5:43313263-43313524(-)$1	261	84	102	14.1439
GCUCCGAAAAACCGUGGA	chr19:15508343-15508601(-)$1	258	200	218	14.1020
CUcuggguuuguaacuug	chr12:112845844-112846115(-)$1	271	194	212	12.8000
UUCCCCAUUAUUUCGAGG	chr5:78915839-78916089(+)$1	250	43	61	13.3736
UGCCCCUGGUAAUUGGCA	chr1:145440460-145440708(+)$1	248	214	232	12.1539
GUGUGCUUUCAACUGUCA	chr1:212240160-212240420(+)$1	260	155	173	12.3321
GGGCAGGUAUAGCACUGG	chr1:6711406-6711664(-)$1	258	204	222	14.1439
UUGGUAGUUGAGAAUGCC	chr10:62544547-62544801(+)$1	254	199	217	13.3526
CAUAGCUUGAUUUUGCAA	chr20:45985188-45985477(-)$1	289	262	280	12.4909
GUGGAGAAGAUUGACUUU	chr19:39125685-39125935(+)$1	250	51	69	14.4466
UAUUUAAAUAAAGCUGAG	chrX:135962550-135962832(-)$1	282	198	216	14.6460
CAGGAAAAAGAAGCUUCU	chr1:113162436-113162683(+)$1	247	156	174	13.2974
AUAUGUAUAUAGAGAUAU	chr6:147581812-147582099(+)$1	287	261	279	13.1625
UUCAGGAUGGCCUCCCUG	chr11:587384-587659(+)$1	275	112	130	14.5912
UUUAagcaaguucccuua	chr1:23647835-23648093(-)$1	258	224	242	14.6649
UUGUACACAAUUAGGUAU	chrX:151130701-151130965(-)$1	264	57	75	14.9963
CUCCCUGCAUUCAAAGGG	chr1:19430368-19430619(-)$1	251	154	172	13.2974
GCAAUGUUUGUGUUUAUU	chr9:134022899-134023150(+)$1	251	91	109	14.5912
UUCUACUUCAUACUGUAA	chr2:101910298-101910546(-)$1	248	39	57	13.8117
CAUGGUAAGCUUGGGCCA	chr3:13393169-13393452(-)$1	283	70	88	13.9021
UAGCUGUAGAACUCCAGC	chr13:92003231-92003448(+)$1	217	158	176	13.3266
CCAGACAAGAGGAGGUCU	chr9:123628946-123629218(-)$1	272	162	180	13.8152
UCUAGCUCCUCCCUGCUA	chr1:145440785-145440993(+)$1	208	111	129	13.3526
UGGUACUGAGGUAUGUGC	chr16:31201649-31201908(+)$1	259	126	144	13.9171
AUGCUUUCCAAAGUGGGC	chr11:591408-591698(+)$1	290	123	141	14.6796
AGGUAUCUGUUUAAAUAU	chr11:62620112-62620345(-)$1	233	65	83	13.2974
CAGUUCUAUUcucugagc	chr12:104327995-104328296(+)$1	301	127	145	13.7266
AUCUAGUCCGUCCCCUAA	chr19:54705078-54705289(+)$1	211	150	168	13.6031
CUGUGUAUUGCAAAAUAA	chr1:160276747-160277023(-)$1	276	123	141	13.6031
CAAGCAUUAUACCUUGUU	chr6:147685227-147685488(+)$1	261	0	18	13.3266
UCAUGGUUAUGUUGUCAG	chr7:44839005-44839293(+)$1	288	249	267	13.5694
UUCCUGACACUGAAcagg	chr10:74789820-74790101(-)$1	281	133	151	14.6649
UAUCCUGGAUAACAAGGA	chr6:53160264-53160502(-)$1	238	185	203	13.3526
GUGAGUAGGGAAGAGCUC	chr3:3188236-3188507(+)$1	271	229	247	14.0159
AAGAGAAAAUUAAAUCUG	chr16:24809213-24809458(+)$1	245	76	94	13.8313
ACAACUGCCCAGUAAGUU	chr20:5555881-5556128(-)$1	247	59	77	13.9205
UGUGGGCUUUCUCUCCUU	chr17:40659575-40659821(+)$1	246	84	102	13.4739

#DB
((((((........))))	chr15:101831983-101832239(-)$1	1	15	33	12.3428
.(((((........))))	chr2:175976098-175976372(-)$1	1	190	208	14.1020
((((((........))))	chr19:3977635-3977879(-)$1	1	193	211	12.3428
((.(((........))).	chr3:9476491-9476749(+)$1	1	92	110	13.8595
(.((((........))))	chr11:121875028-121875257(+)$1	1	21	39	13.1525
((((((........))))	chrX:151139437-151139690(-)$1	1	33	51	12.3428
..((((........))))	chr11:755953-756230(+)$1	1	154	172	13.3526
...(((........))))	chr12:123875252-123875513(+)$1	1	82	100	12.5022
..((((........))))	chr21:17191090-17191347(+)$1	1	170	188	13.3526
..((((........))))	chr1:46769420-46769688(+)$1	1	4	22	14.9963
.(((((........))))	chr3:196229549-196229806(-)$1	1	197	215	14.0159
..((((........))))	chr1:33478584-33478882(-)$1	1	77	95	14.9001
..((((........))))	chr21:33073116-33073380(-)$1	1	50	68	14.9085
((((((........))))	chr3:44856494-44856761(+)$1	1	174	192	12.3428
(...((........))..	chrX:70757846-70758122(+)$1	1	178	196	12.4487
((((((........))))	chr16:720283-720560(+)$1	1	23	41	14.5878
..((((........))))	chr11:9598135-9598386(+)$1	1	157	175	13.3526
(((.((........)).)	chr1:19481225-19481487(-)$1	1	106	124	12.5800
)(((((........))))	chr11:122928798-122929033(-)$1	1	173	191	13.8152
.(((((........))))	chr7:42974664-42974963(+)$1	1	15	33	13.3266
((.(((........))))	chr9:97218542-97218798(+)$1	1	3	21	13.9345
((((((........))))	chr5:137894029-137894310(-)$1	1	34	52	14.0940
..((((........))))	chr7:156754880-156755129(+)$1	1	81	99	14.9085
..((((........))))	chr12:123060377-123060658(+)$1	1	212	230	14.9963
(((..(........)..)	chr1:207940466-207940744(+)$1	1	246	264	12.8689
((((((........))))	chr11:61578048-61578294(-)$1	1	36	54	13.2974
.(.(((........))).	chr5:43313263-43313524(-)$1	1	84	102	14.1439
.(((((........))))	chr19:15508343-15508601(-)$1	1	200	218	14.1020
((..((........)).)	chr12:112845844-112846115(-)$1	1	194	212	12.8000
((((.(........).))	chr5:78915839-78916089(+)$1	1	43	61	13.3736
(((.((........))..	chr1:145440460-145440708(+)$1	1	214	232	12.1539
((..((........))..	chr1:212240160-212240420(+)$1	1	155	173	12.3321
.(.(((........))).	chr1:6711406-6711664(-)$1	1	204	222	14.1439
..((((........))))	chr10:62544547-62544801(+)$1	1	199	217	13.3526
((..((........))..	chr20:45985188-45985477(-)$1	1	262	280	12.4909
((((((........))))	chr19:39125685-39125935(+)$1	1	51	69	14.4466
(.((((........))))	chrX:135962550-135962832(-)$1	1	198	216	14.6460
((((((........))))	chr1:113162436-113162683(+)$1	1	156	174	13.2974
((((((........))))	chr6:147581812-147582099(+)$1	1	261	279	13.1625
..((((........))))	chr11:587384-587659(+)$1	1	112	130	14.5912
(.((((........))))	chr1:23647835-23648093(-)$1	1	224	242	14.6649
..((((........))))	chrX:151130701-151130965(-)$1	1	57	75	14.9963
((((((........))))	chr1:19430368-19430619(-)$1	1	154	172	13.2974
..((((........))))	chr9:134022899-134023150(+)$1	1	91	109	14.5912
((.(((........))))	chr2:101910298-101910546(-)$1	1	39	57	13.8117
((((((........))))	chr3:13393169-13393452(-)$1	1	70	88	13.9021
.(((((........))))	chr13:92003231-92003448(+)$1	1	158	176	13.3266
)(((((........))))	chr9:123628946-123629218(-)$1	1	162	180	13.8152
..((((........))))	chr1:145440785-145440993(+)$1	1	111	129	13.3526
..((((........))))	chr16:31201649-31201908(+)$1	1	126	144	13.9171
(.((((........))))	chr11:591408-591698(+)$1	1	123	141	14.6796
((((((........))))	chr11:62620112-62620345(-)$1	1	65	83	13.2974
((((((........))))	chr12:104327995-104328296(+)$1	1	127	145	13.7266
((.(((........))).	chr19:54705078-54705289(+)$1	1	150	168	13.6031
((.(((........))).	chr1:160276747-160277023(-)$1	1	123	141	13.6031
.(((((........))))	chr6:147685227-147685488(+)$1	1	0	18	13.3266
((.(((........))))	chr7:44839005-44839293(+)$1	1	249	267	13.5694
(.((((........))))	chr10:74789820-74790101(-)$1	1	133	151	14.6649
..((((........))))	chr6:53160264-53160502(-)$1	1	185	203	13.3526
.(((((........))))	chr3:3188236-3188507(+)$1	1	229	247	14.0159
((((((........))).	chr16:24809213-24809458(+)$1	1	76	94	13.8313
.(((((........))))	chr20:5555881-5556128(-)$1	1	59	77	13.9205
((.(((........))).	chr17:40659575-40659821(+)$1	1	84	102	13.4739

#PSSM
: : 0.14	d : 0.12	f : 0.11	! : 0.11	e : 0.11	g : 0.07	c : 0.04	b : 0.04	$ : 0.04	[ : 0.03	" : 0.03	C : 0.01	& : 0.01	# : 0.01	F : 0.01	i : 0.01	' : 0.01	H : 0.01	
e : 0.26	: : 0.11	f : 0.09	g : 0.07	d : 0.06	[ : 0.06	! : 0.04	" : 0.04	c : 0.03	a : 0.03	$ : 0.03	b : 0.03	& : 0.01	# : 0.01	F : 0.01	i : 0.01	' : 0.01	H : 0.01	
d : 0.39	e : 0.22	[ : 0.14	g : 0.07	f : 0.06	! : 0.04	& : 0.01	" : 0.01	i : 0.01	
d : 0.38	e : 0.19	c : 0.17	f : 0.06	! : 0.06	g : 0.06	[ : 0.03	" : 0.01	i : 0.01	
d : 0.38	e : 0.17	c : 0.17	b : 0.09	f : 0.06	g : 0.06	! : 0.01	[ : 0.01	i : 0.01	
d : 0.38	e : 0.17	c : 0.17	b : 0.09	f : 0.06	g : 0.06	a : 0.03	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.38	e : 0.17	c : 0.17	b : 0.09	f : 0.06	g : 0.06	a : 0.03	i : 0.01	
d : 0.38	e : 0.17	c : 0.17	b : 0.09	f : 0.06	g : 0.06	2 : 0.01	] : 0.01	i : 0.01	
d : 0.38	e : 0.19	c : 0.17	f : 0.06	g : 0.06	2 : 0.04	] : 0.03	3 : 0.01	4 : 0.01	i : 0.01	
d : 0.41	e : 0.23	] : 0.09	f : 0.07	g : 0.07	2 : 0.04	3 : 0.01	4 : 0.01	i : 0.01	

#score	860.5036346214828
#seq	63
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_transcript_m1_run2.txt

#BEAR
=========[a"""bbmmmmbb]a]===========cc	chr22:20112263-20112477(+)$1	214	124	162	18.0832
"""eeeee[bb!!cccmmmmccc22bbeeeee333bbg	chr7:150777500-150777790(-)$1	290	132	170	14.3262
gggggg"""ccc[cccmmmmccc]ccc4444ggggggg	chr19:42788118-42788376(+)$1	258	96	134	17.0265
iiiiiii[bb[bbcccmmmmccc]bb]bb333iiiiii	chr1:27883590-27883898(-)$1	308	179	217	15.9856
e[ccc!!ccc!!acccmmmmccc333a22ccc22ccce	chr9:132260503-132260766(+)$1	263	211	249	16.2358
====iiiiiiiiiddddllldddd]iiiiiiiii4444	chr19:42401289-42401573(+)$1	284	114	152	14.1368
==============[bblllbb]===============	chr16:88572602-88572859(+)$1	257	158	196	16.4594
#eeeee[ccc"""cccmmmmccc333ccc]eeeeebb]	chr7:1498074-1498287(-)$1	213	149	187	15.8770
ggg[bb[a####cccnnnnnccc333a]bb]ggggggg	chr2:128738549-128738818(-)$1	269	143	181	15.2524
=============[cccnnnnnccc=============	chr1:249200769-249201073(+)$1	304	265	303	15.8599
ccc[ccc[dddd[cccmmmmccc22ddddccc]ccchh	chr2:65496154-65496467(+)$1	313	126	164	14.0835
ccc[ccc"""bb[cccmmmmccc]bb22cccccc]ddd	chr1:2199995-2200261(+)$1	266	40	78	14.5633
=========="""cccmmmmccc]============]c	chr17:27619658-27619918(-)$1	260	29	67	20.6379
dddd[a[dddd!!cccmmmmccc333dddd22a]dddd	chr11:64879667-64879987(+)$1	320	253	291	14.0064
""ggggggg[a!!cccmmmmccca]ggggggg]fffff	chr5:892392-892752(-)$1	360	199	237	16.5191
####ffffff!!cccnnnnnccc22ffffff22fffff	chr6:159048556-159048827(+)$1	271	48	86	12.4443
:=========="""cccooooooccc]==========C	chr1:31356979-31357254(-)$1	275	123	161	14.2172
[==========!!cccooooooccc]==========22	chr3:140660937-140661253(+)$1	316	135	173	17.4882
ccccggggggg!!cccmmmmccc22ggggggg22cccI	chr8:145028088-145028367(-)$1	279	176	214	15.1375
=========="""cccnnnnnccc4444==========	chr7:98993967-98994235(-)$1	268	66	104	18.4962
=======[dddd[cccmmmmccc]dddd4444======	chr4:74123647-74123927(-)$1	280	72	110	16.7875
iiiiiiiii####bbnnnnnbb4444iiiiiiiii]a]	chr19:1156805-1157102(-)$1	297	172	210	15.9970
dffffffiiiiiiiiimmmmiiiiiiiii4444fffff	chr22:50037564-50037870(-)$1	306	259	297	13.7145
=========="""cccmmmmccc===========22ff	chr4:763935-764210(-)$1	275	180	218	19.4278
e[bb####a!!a[cccmmmmccca22a333bb]eeeee	chr19:1063960-1064214(+)$1	254	28	66	15.4120
ggg[bb[bb####bbnnnnnbb333bbbbgggggggcc	chr1:36602185-36602512(-)$1	327	174	212	12.9340
iiiiiiii[bb[cccammmma]ccc]bb]iiiiiiiii	chr7:5463149-5463436(-)$1	287	114	152	16.2972
eeee[bb"""bb[cccmmmmccc]bb4444bb]eeeee	chr13:19625806-19626082(-)$1	276	172	210	13.9864
ddd####ffffffcccmmmmccc]ffffff4444dddd	chr22:21212448-21212740(-)$1	292	159	197	12.9108
============!!bbmmmmbb333============:	chr16:85061504-85061763(+)$1	259	104	142	18.0425
cccccc!!ccc[cccnnnnnccc]cccccc]ccc22ii	chr9:80646049-80646344(-)$1	295	42	80	13.9065
ggggffffff[cccooooooccc]ffffff:iiiiiii	chr7:139056190-139056476(+)$1	286	73	111	12.1856
[bb!!ffffff!!bbammmma]bb333ffffff333bb	chr2:97467822-97468146(+)$1	324	204	242	13.2630
======$$$$$eeeeellleeeee333===========	chr19:44284332-44284626(-)$1	294	108	146	14.1098
ii[a[a"""ccc[cccmmmmccc]ccc333a]aiiiii	chr19:47987245-47987559(-)$1	314	93	131	17.4597
cccffffff####cccmmmmccc4444ffffff:eeee	chr17:26940849-26941190(-)$1	341	280	318	14.1801
%%%%%===========mmmm===========333bb]b	chr11:65192441-65192682(+)$1	241	73	111	13.3576
======[ccc[eeeeellleeeee]ccc==========	chr20:60722692-60722943(+)$1	251	184	222	14.0008
[ggggggg[a"""dddd[==============[=====	chr1:29224070-29224350(+)$1	280	19	57	13.7416
eee[ggggggg!!cccmmmmccc]ggggggg]eeeeeg	chr19:1879441-1879753(-)$1	312	17	55	15.7780
gggggg[ccc[a[cccmmmmccc]a22ccc333ggggg	chr1:46767332-46767663(-)$1	331	28	66	17.1518
"ccc"""iiiiiiiiinnnnniiiiiiiii22ccc333	chr16:30535373-30535638(-)$1	265	17	55	13.6893
::==========[cccmmmmccc]==========::::	chr1:35734960-35735204(+)$1	244	202	240	13.3745
i[eeeee[ccc[cccnnnnnccc22ccc]eeeeeiiii	chr17:27619600-27619851(-)$1	251	104	142	13.5208
c[bb[ccc####bb[ammmma]bb333cccbb]ccc22	chr19:12832950-12833220(-)$1	270	205	243	13.4537
Gbb[ffffffbb[cccmmmmccc]bb333ffffff]bb	chr7:150066302-150066605(+)$1	303	165	203	13.0691
[dddd[ccc[bb[cccmmmmccc333bb]ccc]dddd>	chr20:57474845-57475087(+)$1	242	118	156	14.5262
gggg[dddd####bboooooobb22dddd]gggggggd	chr8:144670289-144670552(-)$1	263	15	53	12.5111
ffff[==========nnnnn==========ffffff]b	chr15:35271715-35271982(-)$1	267	122	160	13.9771
ddccc"""ccc[a!!ammmma22a]ccc22ccc333dd	chr8:30669809-30670093(-)$1	284	46	84	13.4382
f[ccc[eeeeea[cccmmmmccc]a]eeeee]ccc22f	chr15:66084058-66084354(-)$1	296	105	143	13.9802
:==========[cccrrrrrrrrrccc==========:	chr19:13231921-13232175(+)$1	254	124	162	12.7261
cc[==========[bblllbb]==========ccchhh	chr17:29037283-29037536(+)$1	253	147	185	14.5266

#otherMatches

#Seq PSSM
UGACCCUGGGCUUCUGACUUCACGGCCAGGGUCAGAAU	chr22:20112263-20112477(+)$1	214	124	162	18.0832
CUUCGCCGACUCCGCGCCAUCGCAAAGCGGUGCACUCG	chr7:150777500-150777790(-)$1	290	132	170	14.3262
ggcggggaggcgguggugguucggcgcggggcUCGCUC	chr19:42788118-42788376(+)$1	258	96	134	17.0265
CGCCGGCAGGGUGACCCUCGGGUCCAGCCAGAGCUGGC	chr1:27883590-27883898(-)$1	308	179	217	15.9856
GGUGGGACAUGCCGGAAUCUUCCAGAGAGGUGGGCCAC	chr9:132260503-132260766(+)$1	263	211	249	16.2358
GGGGAGGUGGGUCAGGUUCCAUCUGGGCCCACCUCUGA	chr19:42401289-42401573(+)$1	284	114	152	14.1368
CUGGGGUCUUCUAGGGCAGGGCGCUGGGGGGCCUUAGG	chr16:88572602-88572859(+)$1	257	158	196	16.4594
UGUUUAUUCACUCAGCAAACGCUCUUUGGCUAAAUGAC	chr7:1498074-1498287(-)$1	213	149	187	15.8770
uguauuguaaggccugugggaggggaaggaaauggucu	chr2:128738549-128738818(-)$1	269	143	181	15.2524
CUUCUUUCUCUUUUGCUAGUGAGGUGAAGAGAAGGGAG	chr1:249200769-249201073(+)$1	304	265	303	15.8599
UUCGGGAUGGGUGGGCAGCUGCUGAACCCUUUAGGGCA	chr2:65496154-65496467(+)$1	313	126	164	14.0835
UGGCUGGCUUGACAGGUCCCCCUUUCCCUCACCAUGGA	chr1:2199995-2200261(+)$1	266	40	78	14.5633
ggggUUGUGUAACCCGGUggcggcgcgcggccccgggc	chr17:27619658-27619918(-)$1	260	29	67	20.6379
CCGUGCGGGCCGGCGGGGAGCUGGGGGGCUAGGGGCGG	chr11:64879667-64879987(+)$1	320	253	291	14.0064
ACACGUGAGGGGUCCUGGGUAGGCGCUUACGUUCCUGG	chr5:892392-892752(-)$1	360	199	237	16.5191
aaagcugugggguggcugccccaggccgcagaacaggg	chr6:159048556-159048827(+)$1	271	48	86	12.4443
UGGGGGGGGUCUGUGGUGUUUCAGCUUGGCCUUCUCUG	chr1:31356979-31357254(-)$1	275	123	161	14.2172
GGCCUGCGGGUGAGGGGAGCGACCCAGCCCGUGGGUGG	chr3:140660937-140661253(+)$1	316	135	173	17.4882
CUGGCUGGGGUUAGCGGGGUCGCGUGCCCCAGAACCAC	chr8:145028088-145028367(-)$1	279	176	214	15.1375
UCUUCAUCUUGGCACAGAAAUUGUUUGGGGGAUGGGGG	chr7:98993967-98994235(-)$1	268	66	104	18.4962
UCCCUCGGCCUAAAUCGUGAGGUGUGGGAAUGUGGGGG	chr4:74123647-74123927(-)$1	280	72	110	16.7875
UCCUGGGGGAUUGCAGAGGGUGGGCGUUCUCAGGAGUG	chr19:1156805-1157102(-)$1	297	172	210	15.9970
CAAGGCCGUUUCUGGAGUCUUCUGGAAGCUCUGGGCCU	chr22:50037564-50037870(-)$1	306	259	297	13.7145
GUACACAUAUGUAGCAUGCAUGUGUGUGUGUGCGGCCA	chr4:763935-764210(-)$1	275	180	218	19.4278
GGGUGUAAGGACACACAGAGGUGGGACGCGGCGCCGGG	chr19:1063960-1064214(+)$1	254	28	66	15.4120
UUUGCCAGGAAAGGAGCCAGUCAUGCCGGAAACACUGA	chr1:36602185-36602512(-)$1	327	174	212	12.9340
CUUUUCCGGGGGCUGCGGGAGCCGGGCCGCGGGAGGGC	chr7:5463149-5463436(-)$1	287	114	152	16.2972
GUCAGCUCUGAAGAGCAGUGGCUGUUACCCAGGUGACA	chr13:19625806-19626082(-)$1	276	172	210	13.9864
CAGGGAGCAUCUUGUGACAUCGCGGAGGUGGAGGCUGG	chr22:21212448-21212740(-)$1	292	159	197	12.9108
GGUccgcggggcgagcgggggcggggccucgcgggccg	chr16:85061504-85061763(+)$1	259	104	142	18.0425
gcggcgguucccggagcucgucccggacgcgcgcccgg	chr9:80646049-80646344(-)$1	295	42	80	13.9065
UUGGUUUCUUGUUUGUAUGGGAGGGAGAGGGUGGGUAG	chr7:139056190-139056476(+)$1	286	73	111	12.1856
UGCUCCUGGCCCAGCCAAGUGAGCACCGGCCAGCCUGC	chr2:97467822-97468146(+)$1	324	204	242	13.2630
ugagggaggagagguugggggccuagacucuugggucu	chr19:44284332-44284626(-)$1	294	108	146	14.1098
UAGUGCGGGUUGGGGCGGGGGCUGCGGAGAGGGUGCUU	chr19:47987245-47987559(-)$1	314	93	131	17.4597
CCAACAAUUAUUUUCCUAGAGGAUUUGAAUUGUGCCCA	chr17:26940849-26941190(-)$1	341	280	318	14.1801
GAAGGGAAUUCUCUGGGGCUUUGGGGAAUUUAGUGCGU	chr11:65192441-65192682(+)$1	241	73	111	13.3576
UACCCCAUGUCCUUGGUACCCAGGUGCGGGGGUGGGGC	chr20:60722692-60722943(+)$1	251	184	222	14.0008
ggaagcggagggaagggaagggaaggggaggggagggg	chr1:29224070-29224350(+)$1	280	19	57	13.7416
CUGAGGUGUGGCCAGGCGGUCCUCCCACACCCUGGCCU	chr19:1879441-1879753(-)$1	312	17	55	15.7780
AGGCCUAGCCGCGCUGGGGACAGGGGAGGCCUCGGGCC	chr1:46767332-46767663(-)$1	331	28	66	17.1518
AUGGAGAGAGGUCAGCGGAGGGCUGGCCUCAGCCGCGG	chr16:30535373-30535638(-)$1	265	17	55	13.6893
UAGCCGUUAUCUAGACCAAAGUCGGGGUGGUGGUCUUA	chr1:35734960-35735204(+)$1	244	202	240	13.3745
CUCCCGGGUGCGGCGGGAGGCGCGGGCAGUCGGGGCGG	chr17:27619600-27619851(-)$1	251	104	142	13.5208
GGGGAUCUGAUUGGGGGAAGCGUCUGGGGACUGCUUGG	chr19:12832950-12833220(-)$1	270	205	243	13.4537
CCUUUGGCCAUCAGGGAAAGCCCAGACUCUGGCCACAG	chr7:150066302-150066605(+)$1	303	165	203	13.0691
CAAAGUAACUGACACAUGUUUGUUCAUCUGUUUCUUUU	chr20:57474845-57475087(+)$1	242	118	156	14.5262
UGGGGCCAGGCAGGUGGGUGGACGAUUGGACUUGGAGG	chr8:144670289-144670552(-)$1	263	15	53	12.5111
GGGAUAGUAGGUGGGGGUGAUCUGCUUGCUUCUUUUAC	chr15:35271715-35271982(-)$1	267	122	160	13.9771
gcggcggagggagaggggagcggcgcccgggccggggc	chr8:30669809-30670093(-)$1	284	46	84	13.4382
CGGGGAGGAGGCACGGAUGGCCGAGAUCUCCGCCCGAG	chr15:66084058-66084354(-)$1	296	105	143	13.9802
GGCUCAGGGGACAGCACAUUCACAGCUUUUCUUGAGUA	chr19:13231921-13232175(+)$1	254	124	162	12.7261
GAAGAGGGGGUGCAGCCAGGCAGCACCUUCUCUCCGUG	chr17:29037283-29037536(+)$1	253	147	185	14.5266

#DB
(((((((((.(...((....)).).)))))))))))))	chr22:20112263-20112477(+)$1	1	124	162	18.0832
...(((((.((..(((....)))..)))))))...)))	chr7:150777500-150777790(-)$1	1	132	170	14.3262
((((((...(((.(((....))).)))....)))))))	chr19:42788118-42788376(+)$1	1	96	134	17.0265
(((((((.((.(((((....))).)).))...))))))	chr1:27883590-27883898(-)$1	1	179	217	15.9856
(.(((..(((..((((....)))...)..)))..))))	chr9:132260503-132260766(+)$1	1	211	249	16.2358
(((((((((((((((((...)))).)))))))))....	chr19:42401289-42401573(+)$1	1	114	152	14.1368
((((((((((((((.((...)).)))))))))))))))	chr16:88572602-88572859(+)$1	1	158	196	16.4594
.(((((.(((...(((....)))...))).))))))).	chr7:1498074-1498287(-)$1	1	149	187	15.8770
(((.((.(....(((.....)))...).)).)))))))	chr2:128738549-128738818(-)$1	1	143	181	15.2524
(((((((((((((.(((.....))))))))))))))))	chr1:249200769-249201073(+)$1	1	265	303	15.8599
(((.(((.((((.(((....)))..))))))).)))))	chr2:65496154-65496467(+)$1	1	126	164	14.0835
(((.(((...((.(((....))).))..)))))).)))	chr1:2199995-2200261(+)$1	1	40	78	14.5633
((((((((((...(((....))).)))))))))))).)	chr17:27619658-27619918(-)$1	1	29	67	20.6379
((((.(.((((..(((....)))...))))..).))))	chr11:64879667-64879987(+)$1	1	253	291	14.0064
..(((((((.(..(((....)))).))))))).)))))	chr5:892392-892752(-)$1	1	199	237	16.5191
....((((((..(((.....)))..))))))..)))))	chr6:159048556-159048827(+)$1	1	48	86	12.4443
.((((((((((...(((......))).)))))))))))	chr1:31356979-31357254(-)$1	1	123	161	14.2172
.((((((((((..(((......))).))))))))))..	chr3:140660937-140661253(+)$1	1	135	173	17.4882
)((((((((((..(((....)))..)))))))..))))	chr8:145028088-145028367(-)$1	1	176	214	15.1375
((((((((((...(((.....)))....))))))))))	chr7:98993967-98994235(-)$1	1	66	104	18.4962
(((((((.((((.(((....))).))))....))))))	chr4:74123647-74123927(-)$1	1	72	110	16.7875
(((((((((....((.....))....))))))))).).	chr19:1156805-1157102(-)$1	1	172	210	15.9970
)(((((((((((((((....)))))))))....)))))	chr22:50037564-50037870(-)$1	1	259	297	13.7145
((((((((((...(((....))))))))))))))..))	chr4:763935-764210(-)$1	1	180	218	19.4278
(.((....(..(.(((....))))..)...)).)))))	chr19:1063960-1064214(+)$1	1	28	66	15.4120
(((.((.((....((.....))...)))))))))))((	chr1:36602185-36602512(-)$1	1	174	212	12.9340
((((((((.((.((((....).))).)).)))))))))	chr7:5463149-5463436(-)$1	1	114	152	16.2972
((((.((...((.(((....))).))....)).)))))	chr13:19625806-19626082(-)$1	1	172	210	13.9864
(((....(((((((((....))).))))))....))))	chr22:21212448-21212740(-)$1	1	159	197	12.9108
((((((((((((..((....))...)))))))))))).	chr16:85061504-85061763(+)$1	1	104	142	18.0425
((((((..(((.(((.....))).)))))).)))..))	chr9:80646049-80646344(-)$1	1	42	80	13.9065
))))((((((.(((......))).)))))).(((((((	chr7:139056190-139056476(+)$1	1	73	111	12.1856
.((..((((((..(((....).))...))))))...))	chr2:97467822-97468146(+)$1	1	204	242	13.2630
((((((.....(((((...)))))...)))))))))))	chr19:44284332-44284626(-)$1	1	108	146	14.1098
((.(.(...(((.(((....))).)))...).))))))	chr19:47987245-47987559(-)$1	1	93	131	17.4597
)))((((((....(((....)))....)))))).((((	chr17:26940849-26941190(-)$1	1	280	318	14.1801
.....(((((((((((....)))))))))))...)).)	chr11:65192441-65192682(+)$1	1	73	111	13.3576
((((((.(((.(((((...))))).)))))))))))))	chr20:60722692-60722943(+)$1	1	184	222	14.0008
.(((((((.(...((((.((((((((((((((.(((((	chr1:29224070-29224350(+)$1	1	19	57	13.7416
(((.(((((((..(((....))).))))))).))))))	chr19:1879441-1879753(-)$1	1	17	55	15.7780
((((((.(((.(.(((....))).)..)))...)))))	chr1:46767332-46767663(-)$1	1	28	66	17.1518
.(((...(((((((((.....)))))))))..)))...	chr16:30535373-30535638(-)$1	1	17	55	13.6893
..((((((((((.(((....))).))))))))))....	chr1:35734960-35735204(+)$1	1	202	240	13.3745
(.(((((.(((.(((.....)))..))).)))))))))	chr17:27619600-27619851(-)$1	1	104	142	13.5208
(.((.(((....((.(....).))...))))).)))..	chr19:12832950-12833220(-)$1	1	205	243	13.4537
)((.((((((((.(((....))).))...)))))).))	chr7:150066302-150066605(+)$1	1	165	203	13.0691
.((((.(((.((.(((....)))...)).))).)))).	chr20:57474845-57475087(+)$1	1	118	156	14.5262
((((.((((....((......))..)))).)))))))(	chr8:144670289-144670552(-)$1	1	15	53	12.5111
((((.((((((((((.....)))))))))))))))).)	chr15:35271715-35271982(-)$1	1	122	160	13.9771
(((((...(((.(..(....)..).)))..)))...))	chr8:30669809-30670093(-)$1	1	46	84	13.4382
(.(((.((((((.(((....))).).))))).)))..)	chr15:66084058-66084354(-)$1	1	105	143	13.9802
.((((((((((.(((.........))))))))))))).	chr19:13231921-13232175(+)$1	1	124	162	12.7261
((.((((((((((.((...)).))))))))))))))))	chr17:29037283-29037536(+)$1	1	147	185	14.5266

#PSSM
= : 0.20	c : 0.13	g : 0.11	i : 0.09	e : 0.07	d : 0.07	[ : 0.07	" : 0.05	: : 0.05	# : 0.03	f : 0.03	% : 0.01	G : 0.01	
= : 0.26	g : 0.13	c : 0.13	[ : 0.09	i : 0.07	d : 0.07	e : 0.05	" : 0.03	f : 0.03	b : 0.03	# : 0.01	% : 0.01	: : 0.01	
= : 0.28	c : 0.16	g : 0.15	e : 0.07	b : 0.07	i : 0.05	d : 0.05	f : 0.03	[ : 0.03	" : 0.01	# : 0.01	% : 0.01	
= : 0.30	g : 0.11	c : 0.11	[ : 0.11	e : 0.07	i : 0.05	f : 0.05	d : 0.03	# : 0.03	b : 0.03	! : 0.01	a : 0.01	% : 0.01	
= : 0.28	g : 0.11	c : 0.11	[ : 0.11	f : 0.09	i : 0.07	e : 0.05	b : 0.03	# : 0.03	! : 0.01	% : 0.01	" : 0.01	d : 0.01	
= : 0.32	g : 0.11	f : 0.11	i : 0.07	c : 0.07	e : 0.05	b : 0.05	a : 0.03	# : 0.03	" : 0.03	[ : 0.03	! : 0.01	d : 0.01	
= : 0.28	[ : 0.11	f : 0.11	" : 0.07	i : 0.07	c : 0.07	g : 0.07	e : 0.05	! : 0.03	# : 0.03	b : 0.01	$ : 0.01	d : 0.01	
= : 0.26	c : 0.11	f : 0.11	" : 0.09	i : 0.09	[ : 0.07	g : 0.07	e : 0.03	d : 0.03	a : 0.01	# : 0.01	b : 0.01	! : 0.01	$ : 0.01	
= : 0.26	c : 0.15	f : 0.11	" : 0.07	i : 0.07	d : 0.07	[ : 0.05	g : 0.05	b : 0.03	# : 0.03	a : 0.01	$ : 0.01	e : 0.01	
= : 0.24	c : 0.16	# : 0.11	f : 0.09	[ : 0.05	b : 0.05	i : 0.05	d : 0.05	" : 0.03	g : 0.03	! : 0.01	$ : 0.01	a : 0.01	e : 0.01	
= : 0.18	b : 0.11	# : 0.11	c : 0.09	" : 0.09	[ : 0.07	! : 0.05	i : 0.05	d : 0.05	a : 0.03	g : 0.03	f : 0.03	$ : 0.01	e : 0.01	
! : 0.16	" : 0.13	= : 0.13	# : 0.11	b : 0.09	[ : 0.09	c : 0.05	i : 0.05	a : 0.05	d : 0.03	e : 0.03	f : 0.01	
[ : 0.22	! : 0.15	" : 0.13	c : 0.13	= : 0.09	# : 0.07	i : 0.05	b : 0.03	a : 0.03	e : 0.03	f : 0.01	
c : 0.62	b : 0.09	= : 0.05	" : 0.03	d : 0.03	[ : 0.03	i : 0.03	! : 0.03	e : 0.03	
c : 0.64	b : 0.13	d : 0.03	[ : 0.03	i : 0.03	e : 0.03	= : 0.03	o : 0.01	! : 0.01	
c : 0.52	n : 0.13	b : 0.07	a : 0.07	d : 0.03	i : 0.03	o : 0.03	e : 0.03	= : 0.01	r : 0.01	
m : 0.60	n : 0.16	o : 0.05	l : 0.05	d : 0.03	c : 0.03	b : 0.01	r : 0.01	
m : 0.60	n : 0.18	l : 0.09	o : 0.07	[ : 0.01	r : 0.01	
m : 0.60	n : 0.18	l : 0.09	o : 0.07	= : 0.01	r : 0.01	
m : 0.60	n : 0.18	o : 0.07	l : 0.03	e : 0.03	= : 0.01	r : 0.01	b : 0.01	
c : 0.54	b : 0.11	a : 0.07	n : 0.05	o : 0.05	= : 0.05	e : 0.03	d : 0.01	i : 0.01	r : 0.01	
c : 0.56	b : 0.11	] : 0.07	= : 0.05	o : 0.03	i : 0.03	e : 0.03	d : 0.01	n : 0.01	2 : 0.01	r : 0.01	
c : 0.62	= : 0.07	b : 0.05	] : 0.03	i : 0.03	3 : 0.03	e : 0.03	d : 0.01	o : 0.01	4 : 0.01	2 : 0.01	r : 0.01	
] : 0.28	3 : 0.13	2 : 0.11	= : 0.11	c : 0.09	a : 0.07	4 : 0.03	i : 0.03	b : 0.03	e : 0.03	d : 0.01	r : 0.01	
3 : 0.18	c : 0.15	= : 0.15	2 : 0.13	] : 0.09	b : 0.07	4 : 0.05	i : 0.03	f : 0.03	a : 0.03	d : 0.01	g : 0.01	
= : 0.20	c : 0.15	3 : 0.15	b : 0.11	i : 0.05	d : 0.05	g : 0.05	f : 0.05	] : 0.05	4 : 0.05	2 : 0.03	
= : 0.22	c : 0.15	b : 0.07	i : 0.07	d : 0.07	3 : 0.07	a : 0.05	g : 0.05	f : 0.05	4 : 0.05	] : 0.03	2 : 0.03	e : 0.01	
= : 0.28	c : 0.13	f : 0.09	b : 0.07	i : 0.07	d : 0.07	4 : 0.05	g : 0.05	3 : 0.05	e : 0.03	2 : 0.03	] : 0.01	
= : 0.32	c : 0.09	f : 0.09	i : 0.07	4 : 0.05	b : 0.05	d : 0.05	g : 0.05	3 : 0.05	] : 0.05	e : 0.03	2 : 0.03	
= : 0.32	c : 0.13	f : 0.11	4 : 0.07	i : 0.07	g : 0.07	e : 0.05	3 : 0.05	] : 0.03	b : 0.01	d : 0.01	2 : 0.01	
= : 0.30	c : 0.09	g : 0.09	f : 0.09	e : 0.07	4 : 0.07	i : 0.05	b : 0.05	3 : 0.03	] : 0.03	2 : 0.03	: : 0.01	a : 0.01	
= : 0.28	g : 0.11	c : 0.11	i : 0.07	f : 0.07	e : 0.05	3 : 0.05	2 : 0.05	4 : 0.05	b : 0.05	] : 0.05	
= : 0.26	] : 0.11	c : 0.11	i : 0.09	g : 0.07	f : 0.07	3 : 0.05	2 : 0.05	e : 0.05	a : 0.03	4 : 0.03	[ : 0.01	
= : 0.28	c : 0.13	i : 0.11	g : 0.09	e : 0.09	f : 0.09	3 : 0.07	2 : 0.03	] : 0.01	4 : 0.01	: : 0.01	d : 0.01	
= : 0.24	c : 0.13	i : 0.11	g : 0.09	e : 0.09	f : 0.09	3 : 0.05	d : 0.05	2 : 0.03	4 : 0.01	] : 0.01	b : 0.01	: : 0.01	
= : 0.24	g : 0.09	i : 0.09	c : 0.07	d : 0.07	f : 0.07	e : 0.07	b : 0.05	2 : 0.05	3 : 0.05	] : 0.03	4 : 0.01	: : 0.01	h : 0.01	
= : 0.18	i : 0.11	d : 0.09	c : 0.07	b : 0.07	g : 0.07	f : 0.07	e : 0.07	] : 0.05	2 : 0.05	h : 0.03	4 : 0.01	a : 0.01	3 : 0.01	: : 0.01	
= : 0.13	i : 0.11	g : 0.09	d : 0.09	f : 0.09	e : 0.07	b : 0.07	c : 0.05	: : 0.05	] : 0.03	h : 0.03	2 : 0.03	4 : 0.01	C : 0.01	I : 0.01	3 : 0.01	> : 0.01	

#score	794.2763151595053
#seq	53
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_CDS_m3_run2.txt

#BEAR
###bb[ddddnnnnndddd333bb	chr9:14857526-14857787(-)$1	261	17	41	13.8235
c$$$$$ddddnnnnndddd22ccc	chr21:38529000-38529282(+)$1	282	44	68	13.8073
ee!!bbddddnnnnndddd]bbee	chr1:19479695-19479933(-)$1	238	38	62	12.5613
f$$$$$ddddoooooodddd22ff	chr20:36640488-36640748(-)$1	260	232	256	9.7973
dd"""eeeeeooooooeeeee444	chr9:95991876-95992113(+)$1	237	175	199	9.6186
d[bb[a[cccnnnnnccc]a]bb]	chr8:144994820-144995050(-)$1	230	136	160	11.2699
ggggg!!cccnnnnnccc22gggg	chr4:151814130-151814402(-)$1	272	68	92	11.9750
=======[bbnnnnnbb22=====	chr22:28503841-28504126(-)$1	285	228	252	10.2956
ffffffddddnnnnndddd]ffff	chr6:90453232-90453470(-)$1	238	33	57	11.7372
[ccc"""cccnnnnnccc]cccff	chr14:55169085-55169399(+)$1	314	133	157	12.2691
[dddd[ddddnnnnnddddddddc	chrY:15029854-15030085(+)$1	231	96	120	12.9455
[dddd[ddddnnnnndddd]dddd	chr22:50682418-50682655(-)$1	237	179	203	13.2317
dddd!!cccnnnnncccdddd22d	chr2:73676595-73676869(+)$1	274	202	226	10.3210
cc"""eeeeennnnneeeeeccc]	chr10:123842985-123843211(+)$1	226	44	68	12.8062
!!bb!!ddddnnnnndddd]bb]d	chrX:53619301-53619518(-)$1	217	146	170	13.4117
ccc!!eeeeeooooooeeeeeccc	chr13:52544710-52544975(-)$1	265	178	202	8.9504
bb[gggggggnnnnnggggggg]b	chr11:73020613-73020855(+)$1	242	125	149	10.3912
cc####ddddnnnnndddd4444c	chr17:78316902-78317188(+)$1	286	74	98	15.1837
###gggggggnnnnnggggggg44	chr9:116982021-116982224(+)$1	203	40	64	11.0771
ff"""eeeeennnnneeeee333f	chr20:34242960-34243206(-)$1	246	77	101	13.2422
gggggga[bbnnnnnbb]a22ggg	chr22:38890919-38891152(-)$1	233	52	76	10.0848
eeeeeeeeeennnnneeeee]eee	chr4:123868287-123868544(+)$1	257	197	221	11.0476
b####eeeeeooooooeeeee22b	chrY:15029224-15029472(+)$1	248	147	171	9.0173
$bb####cccnnnnnccc4444bb	chr16:2814642-2814885(+)$1	243	166	190	12.1414
d!!ddddcccnnnnnccc22dddd	chr1:110884324-110884606(+)$1	282	71	95	11.7349
dd!!a!!cccnnnnnccc22a22d	chr10:123842255-123842501(+)$1	246	26	50	13.0050
b[dddd[cccnnnnnccc]dddd]	chr4:79240019-79240238(+)$1	219	74	98	10.8790
ee####ddddnnnnnddddeeeee	chr5:14297182-14297472(+)$1	290	69	93	14.0922
dd####ddddoooooodddd333d	chr12:49446889-49447126(-)$1	237	177	201	11.5847
fff"""ddddnnnnnddddfffff	chrX:18970511-18970748(-)$1	237	77	101	13.1780
ee####ddddnnnnndddd333ee	chr1:19452839-19453076(-)$1	237	55	79	15.1642
d[ccc[ddddnnnnnddddccc]d	chr6:144832098-144832340(+)$1	242	145	169	13.4409
ddd"""ddddllldddd]dddd33	chr3:52522404-52522722(+)$1	318	236	260	8.9870
dddd!!ddddoooooodddd22dd	chr2:61575467-61575699(-)$1	232	170	194	10.3163
ccc!!eeeeennnnneeeee4444	chr7:103290666-103290918(-)$1	252	6	30	12.9252
:dddd[ddddnnnnnddddddddD	chr15:86076868-86077196(+)$1	328	67	91	11.1248
eeeee[ddddnnnnndddd]eeee	chr1:234613825-234614091(-)$1	266	193	217	12.8248
!cccaeeeeennnnneeeee22a]	chr1:39879778-39880122(+)$1	344	55	79	12.1875
hhhh!!ddddnnnnndddd>>>>>	chr9:116967317-116967523(+)$1	206	26	50	12.5263
ddd"""cccooooooccc333ddd	chr1:12364574-12364868(+)$1	294	159	183	9.7035
hh[bb!!cccnnnnncccbb22hh	chr1:19484208-19484422(-)$1	214	105	129	10.7291
b[ddddddddnnnnndddd]dddd	chr1:39768586-39768850(+)$1	264	35	59	12.5429
DDccc[ddddnnnnndddd]ccc:	chrX:53629502-53629716(-)$1	214	17	41	10.9569
[dddd[ddddnnnnndddd]dddd	chr15:28510860-28511142(-)$1	282	158	182	13.2317
e####eeeeennnnneeeeeeeee	chr12:57556588-57556814(+)$1	226	148	172	12.4635
bb[ccc[cccnnnnnccc]ccc]b	chr8:144998747-144999001(-)$1	254	36	60	11.1425
cc[bb[ddddnnnnndddd22bbc	chr12:120575744-120575949(-)$1	205	75	99	13.1861
eee!!eeeeennnnneeeee22ee	chr16:18863603-18863846(-)$1	243	209	233	12.3944
gggg[a!!bbnnnnnbb333a]gg	chr9:117063625-117063842(+)$1	217	143	167	10.7848

#otherMatches

#Seq PSSM
UAAUCCAGUGCUGUACAUUCUAGA	chr9:14857526-14857787(-)$1	261	17	41	13.8235
GAAAUAUGGUCACAAACUAGACUC	chr21:38529000-38529282(+)$1	282	44	68	13.8073
CAACGUGGAGAACACCUCCUACUG	chr1:19479695-19479933(-)$1	238	38	62	12.5613
AAAAUUGGUAUUUGGUUACCUGUC	chr20:36640488-36640748(-)$1	260	232	256	9.7973
CAACAUCGUGCGCUUCUACGACUU	chr9:95991876-95992113(+)$1	237	175	199	9.6186
CAUCGCGGGUGUAUGGCUGGAGGA	chr8:144994820-144995050(-)$1	230	136	160	11.2699
AUUUUUUAAAAAAAAUUUCUAAAA	chr4:151814130-151814402(-)$1	272	68	92	11.9750
CUGCCUUGGAAACUAUCAGGAGGC	chr22:28503841-28504126(-)$1	285	228	252	10.2956
ACAGGUGUGGGAAAACUACUAUCU	chr6:90453232-90453470(-)$1	238	33	57	11.7372
UGAGAAUGGCCAUGUGCCCCUCUA	chr14:55169085-55169399(+)$1	314	133	157	12.2691
AUAGGUGGCUAUGGAGGCUUCUAC	chrY:15029854-15030085(+)$1	231	96	120	12.9455
AUGUGGGGAGAAACGUUCCGUACA	chr22:50682418-50682655(-)$1	237	179	203	13.2317
UUCUUACCCACAGAGGGAGAAGCC	chr2:73676595-73676869(+)$1	274	202	226	10.3210
GCAUAUCUGCCGCACGCAGAGCUG	chr10:123842985-123843211(+)$1	226	44	68	12.8062
CAACAACUGCAACAGGUAGGGUAC	chrX:53619301-53619518(-)$1	217	146	170	13.4117
AGUGGCUCCCCACACUGGGAGGCU	chr13:52544710-52544975(-)$1	265	178	202	8.9504
CCCAGGUCCCCAGGAGGGACUUCG	chr11:73020613-73020855(+)$1	242	125	149	10.3912
AGUUAAACGUGAAAAAUGUGCCUC	chr17:78316902-78317188(+)$1	286	74	98	15.1837
GCCCUCCAGGGGUUUCCUGGAGUC	chr9:116982021-116982224(+)$1	203	40	64	11.0771
AACUGGGUGAGGCUUUCAUCGUUU	chr20:34242960-34243206(-)$1	246	77	101	13.2422
gagccacugcaccuagucGAUUGG	chr22:38890919-38891152(-)$1	233	52	76	10.0848
UUGAGAUUGGAGUUCCCAAUGCUC	chr4:123868287-123868544(+)$1	257	197	221	11.0476
CAGUUCUGGCUUUGGUGCUAGUCG	chrY:15029224-15029472(+)$1	248	147	171	9.0173
UGAAAGAUGGUUUACCCAGAACUC	chr16:2814642-2814885(+)$1	243	166	190	12.1414
GCAUGCUUCUACUGAAGAACAGCA	chr1:110884324-110884606(+)$1	282	71	95	11.7349
GCCAGAAGGUUCUUUGCUGCCCAG	chr10:123842255-123842501(+)$1	246	26	50	13.0050
CCAGUGUAGAGCCCAUUUUUACUU	chr4:79240019-79240238(+)$1	219	74	98	10.8790
GCAGCAGAUCAGGCAGAUCGCGAG	chr5:14297182-14297472(+)$1	290	69	93	14.0922
UCUGCUACAGCAUUCUCUGUCUUG	chr12:49446889-49447126(-)$1	237	177	201	11.5847
UUAUCUCCACAGAACGUGGUGAAG	chrX:18970511-18970748(-)$1	237	77	101	13.1780
GGCUACCAGCCAGUUGCUGAAACC	chr1:19452839-19453076(-)$1	237	55	79	15.1642
GUGCAAUACCUUGAUGGUAUGUCU	chr6:144832098-144832340(+)$1	242	145	169	13.4409
UCAGGGGCCCCGGGGGCAUGGGUC	chr3:52522404-52522722(+)$1	318	236	260	8.9870
UGGAUCUAGCAAUGAGGUUAAUUC	chr2:61575467-61575699(-)$1	232	170	194	10.3163
CUAGAACAUGAAAACCAUGUAAAA	chr7:103290666-103290918(-)$1	252	6	30	12.9252
AUUCCUAGCAACCAGUGCUGGAAA	chr15:86076868-86077196(+)$1	328	67	91	11.1248
CAGCCUAGUGCUACCUACUUGGCU	chr1:234613825-234614091(-)$1	266	193	217	12.8248
AGUGCCCACCCCAGAGGUGGCUGC	chr1:39879778-39880122(+)$1	344	55	79	12.1875
UCCUCCCUGCCUGAUGCAGCUUCU	chr9:116967317-116967523(+)$1	206	26	50	12.5263
CAGCAAGGGCCGCAACCCACACUG	chr1:12364574-12364868(+)$1	294	159	183	9.7035
AAGGGCAAGGUGGGUCCUCCAAUU	chr1:19484208-19484422(-)$1	214	105	129	10.7291
UGUGCUAGAAGAUAAUUCUCAGCG	chr1:39768586-39768850(+)$1	264	35	59	12.5429
AGACCAUUUACAAUAUAAGAGGUG	chrX:53629502-53629716(-)$1	214	17	41	10.9569
AACUACGGCCGGCUGGGCCAUGGU	chr15:28510860-28511142(-)$1	282	158	182	13.2317
UGUUGGACGCAGACGGCGUCACUU	chr12:57556588-57556814(+)$1	226	148	172	12.4635
CGGAGCAGGAGUUGAUCCGGCUGC	chr8:144998747-144999001(-)$1	254	36	60	11.1425
ugaguuaauguuuguCAUUCCACC	chr12:120575744-120575949(-)$1	205	75	99	13.1861
AUGUUUAAAUGUGUAGUUUAUUUA	chr16:18863603-18863846(-)$1	243	209	233	12.3944
GGGGCGGGGCGUGGGGCGGGCACC	chr9:117063625-117063842(+)$1	217	143	167	10.7848

#DB
...((.((((.....))))...))	chr9:14857526-14857787(-)$1	1	17	41	13.8235
(.....((((.....))))..)))	chr21:38529000-38529282(+)$1	1	44	68	13.8073
((..((((((.....)))).))))	chr1:19479695-19479933(-)$1	1	38	62	12.5613
(.....((((......))))..))	chr20:36640488-36640748(-)$1	1	232	256	9.7973
((...(((((......)))))...	chr9:95991876-95992113(+)$1	1	175	199	9.6186
(.((.(.(((.....))).).)).	chr8:144994820-144995050(-)$1	1	136	160	11.2699
(((((..(((.....)))..))))	chr4:151814130-151814402(-)$1	1	68	92	11.9750
(((((((.((.....))..)))))	chr22:28503841-28504126(-)$1	1	228	252	10.2956
((((((((((.....)))).))))	chr6:90453232-90453470(-)$1	1	33	57	11.7372
.(((...(((.....))).)))))	chr14:55169085-55169399(+)$1	1	133	157	12.2691
.((((.((((.....)))))))))	chrY:15029854-15030085(+)$1	1	96	120	12.9455
.((((.((((.....)))).))))	chr22:50682418-50682655(-)$1	1	179	203	13.2317
((((..(((.....)))))))..)	chr2:73676595-73676869(+)$1	1	202	226	10.3210
((...(((((.....)))))))).	chr10:123842985-123843211(+)$1	1	44	68	12.8062
..((..((((.....)))).)).)	chrX:53619301-53619518(-)$1	1	146	170	13.4117
(((..(((((......))))))))	chr13:52544710-52544975(-)$1	1	178	202	8.9504
((.(((((((.....))))))).)	chr11:73020613-73020855(+)$1	1	125	149	10.3912
((....((((.....))))....)	chr17:78316902-78317188(+)$1	1	74	98	15.1837
...(((((((.....)))))))..	chr9:116982021-116982224(+)$1	1	40	64	11.0771
((...(((((.....)))))...)	chr20:34242960-34243206(-)$1	1	77	101	13.2422
(((((((.((.....)).)..)))	chr22:38890919-38891152(-)$1	1	52	76	10.0848
((((((((((.....))))).)))	chr4:123868287-123868544(+)$1	1	197	221	11.0476
(....(((((......)))))..)	chrY:15029224-15029472(+)$1	1	147	171	9.0173
.((....(((.....)))....))	chr16:2814642-2814885(+)$1	1	166	190	12.1414
(..(((((((.....)))..))))	chr1:110884324-110884606(+)$1	1	71	95	11.7349
((..(..(((.....)))..)..)	chr10:123842255-123842501(+)$1	1	26	50	13.0050
(.((((.(((.....))).)))).	chr4:79240019-79240238(+)$1	1	74	98	10.8790
((....((((.....)))))))))	chr5:14297182-14297472(+)$1	1	69	93	14.0922
((....((((......))))...)	chr12:49446889-49447126(-)$1	1	177	201	11.5847
(((...((((.....)))))))))	chrX:18970511-18970748(-)$1	1	77	101	13.1780
((....((((.....))))...))	chr1:19452839-19453076(-)$1	1	55	79	15.1642
(.(((.((((.....))))))).)	chr6:144832098-144832340(+)$1	1	145	169	13.4409
(((...((((...)))).))))..	chr3:52522404-52522722(+)$1	1	236	260	8.9870
((((..((((......))))..))	chr2:61575467-61575699(-)$1	1	170	194	10.3163
(((..(((((.....)))))....	chr7:103290666-103290918(-)$1	1	6	30	12.9252
.((((.((((.....))))))))(	chr15:86076868-86077196(+)$1	1	67	91	11.1248
(((((.((((.....)))).))))	chr1:234613825-234614091(-)$1	1	193	217	12.8248
.(((((((((.....)))))..).	chr1:39879778-39880122(+)$1	1	55	79	12.1875
((((..((((.....)))).....	chr9:116967317-116967523(+)$1	1	26	50	12.5263
(((...(((......)))...)))	chr1:12364574-12364868(+)$1	1	159	183	9.7035
((.((..(((.....)))))..))	chr1:19484208-19484422(-)$1	1	105	129	10.7291
(.((((((((.....)))).))))	chr1:39768586-39768850(+)$1	1	35	59	12.5429
(((((.((((.....)))).))).	chrX:53629502-53629716(-)$1	1	17	41	10.9569
.((((.((((.....)))).))))	chr15:28510860-28511142(-)$1	1	158	182	13.2317
(....(((((.....)))))))))	chr12:57556588-57556814(+)$1	1	148	172	12.4635
((.(((.(((.....))).))).)	chr8:144998747-144999001(-)$1	1	36	60	11.1425
((.((.((((.....))))..)))	chr12:120575744-120575949(-)$1	1	75	99	13.1861
(((..(((((.....)))))..))	chr16:18863603-18863846(-)$1	1	209	233	12.3944
((((.(..((.....))...).))	chr9:117063625-117063842(+)$1	1	143	167	10.7848

#PSSM
d : 0.20	e : 0.14	c : 0.12	b : 0.10	f : 0.08	[ : 0.08	g : 0.06	# : 0.04	! : 0.04	h : 0.04	= : 0.02	$ : 0.02	: : 0.02	D : 0.02	
d : 0.22	c : 0.14	e : 0.12	# : 0.08	[ : 0.08	g : 0.06	f : 0.06	b : 0.06	$ : 0.04	! : 0.04	h : 0.04	= : 0.02	D : 0.02	
d : 0.20	# : 0.16	c : 0.12	[ : 0.08	! : 0.06	" : 0.06	b : 0.06	g : 0.06	e : 0.06	$ : 0.04	f : 0.04	= : 0.02	h : 0.02	
d : 0.18	# : 0.14	" : 0.12	b : 0.10	! : 0.10	g : 0.10	c : 0.10	$ : 0.04	e : 0.04	= : 0.02	f : 0.02	h : 0.02	
" : 0.14	d : 0.14	! : 0.14	# : 0.14	b : 0.08	g : 0.08	c : 0.06	$ : 0.04	[ : 0.04	e : 0.04	a : 0.04	= : 0.02	f : 0.02	
e : 0.20	[ : 0.18	! : 0.14	# : 0.10	" : 0.08	g : 0.06	d : 0.06	$ : 0.04	a : 0.04	b : 0.02	= : 0.02	f : 0.02	c : 0.02	
d : 0.48	e : 0.20	! : 0.08	[ : 0.06	c : 0.04	g : 0.04	= : 0.02	" : 0.02	a : 0.02	# : 0.02	
d : 0.46	c : 0.22	e : 0.20	[ : 0.04	g : 0.04	! : 0.02	
d : 0.46	c : 0.22	e : 0.20	b : 0.06	g : 0.04	
d : 0.46	e : 0.20	c : 0.18	b : 0.06	g : 0.04	n : 0.02	o : 0.02	
n : 0.83	o : 0.14	l : 0.02	
n : 0.83	o : 0.14	l : 0.02	
n : 0.83	o : 0.14	l : 0.02	
n : 0.83	o : 0.14	d : 0.02	
n : 0.81	o : 0.14	c : 0.02	d : 0.02	
d : 0.40	c : 0.22	e : 0.14	o : 0.12	b : 0.06	g : 0.04	
d : 0.46	c : 0.22	e : 0.20	b : 0.06	g : 0.04	
d : 0.46	e : 0.20	c : 0.20	g : 0.04	] : 0.04	2 : 0.02	3 : 0.02	
d : 0.48	e : 0.20	] : 0.08	2 : 0.08	g : 0.04	3 : 0.04	a : 0.02	4 : 0.02	b : 0.02	
e : 0.22	] : 0.16	d : 0.16	2 : 0.12	3 : 0.08	c : 0.06	g : 0.04	4 : 0.04	a : 0.02	= : 0.02	f : 0.02	> : 0.02	b : 0.02	
d : 0.18	2 : 0.16	e : 0.12	3 : 0.10	c : 0.10	g : 0.06	4 : 0.06	b : 0.04	] : 0.04	f : 0.04	a : 0.04	= : 0.02	> : 0.02	
d : 0.18	2 : 0.16	c : 0.14	3 : 0.08	b : 0.08	4 : 0.08	g : 0.08	e : 0.08	f : 0.04	= : 0.02	> : 0.02	] : 0.02	
d : 0.18	e : 0.14	b : 0.08	c : 0.08	f : 0.08	4 : 0.08	] : 0.08	g : 0.06	2 : 0.06	3 : 0.06	= : 0.02	a : 0.02	> : 0.02	h : 0.02	
d : 0.22	e : 0.14	b : 0.10	c : 0.10	f : 0.10	] : 0.08	4 : 0.06	g : 0.06	= : 0.02	3 : 0.02	D : 0.02	> : 0.02	h : 0.02	: : 0.02	

#score	582.1156059224656
#seq	49
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_UTR_m2_run2.txt

#BEAR
ee####ddddtttttttttttdddd444	chr19:42752301-42752556(-)$1	255	72	100	24.7029
bb!!bb[bbuuuuuuuuuuuubbbb22b	chr1:991120-991386(+)$1	266	181	209	21.8972
ddd!!dddduuuuuuuuuuuudddd22d	chr19:46029976-46030208(+)$1	232	201	229	23.6892
iiiiiii[bbtttttttttttbb]iiii	chr21:45115721-45115976(+)$1	255	66	94	24.9619
diiiiiiiiivvvvvvvvvvvvviiiii	chr6:153291604-153291849(-)$1	245	95	123	24.1375
hhhhhhh[bbtttttttttttbbhhhhh	chr20:32245244-32245537(-)$1	293	217	245	22.6703
ee[gggggggtttttttttttggggggg	chr12:1895692-1895965(+)$1	273	6	34	24.9797
&iiiiiiiiitttttttttttiiiiiii	chr6:31765237-31765505(-)$1	268	170	198	24.6796
bffffff[bbtttttttttttbbfffff	chr17:38175432-38175693(-)$1	261	105	133	22.9534
ffff[eeeeettttttttttteeeee22	chr5:74657048-74657368(+)$1	320	38	66	23.2704
ggggggddddvvvvvvvvvvvvvdddd5	chrX:70459432-70459714(-)$1	282	7	35	22.7132
==bb[eeeeettttttttttteeeee]b	chr1:205682331-205682573(-)$1	242	198	226	23.4754
eegggggggvvvvvvvvvvvvvgggggg	chr9:90345955-90346231(+)$1	276	229	257	24.2133
ffdddd[cccuuuuuuuuuuuuccc]dd	chr17:40463761-40464011(+)$1	250	59	87	24.1117
[dddd!!cccuuuuuuuuuuuuccc444	chr11:57507707-57507956(+)$1	249	73	101	24.4378
gg[eeeeevvvvvvvvvvvvveeeee]g	chr1:42642390-42642646(-)$1	256	105	133	23.1694
:gggggggyyyyyyyyyyyyyyyygggg	chr18:211193-211479(+)$1	286	231	259	21.8885
gg####ddddtttttttttttdddd]gg	chr3:113528264-113528540(+)$1	276	89	117	25.3579
gg[gggggggwwwwwwwwwwwwwwgggg	chr6:32083294-32083548(-)$1	254	173	201	22.5272
==========uuuuuuuuuuuu======	chr12:25358139-25358384(-)$1	245	172	200	25.3658
cc[cccddddtttttttttttdddd]cc	chr11:64035105-64035373(+)$1	268	78	106	25.3273
=====[ddddtttttttttttdddd]==	chr7:54819925-54820183(-)$1	258	62	90	26.0067
ee[gggggggtttttttttttggggggg	chr4:17802302-17802580(-)$1	278	49	77	24.9797
!!ccc!!ccctttttttttttccc22cc	chr5:177577311-177577542(+)$1	231	39	67	25.1430
ee!!ffffffuuuuuuuuuuuuffffff	chr3:48664404-48664747(-)$1	343	205	233	23.2431
!!ccc[ddddtttttttttttdddd]cc	chr16:56643215-56643482(+)$1	267	206	234	25.4427
cc"""a[ccctttttttttttccc]a33	chr7:129473670-129473975(-)$1	305	130	158	25.1978
==========wwwwwwwwwwwwww====	chr15:91426485-91426739(+)$1	254	50	78	23.0017
ccc[ddddvvvvvvvvvvvvvdddd]cc	chr1:155242902-155243208(-)$1	306	237	265	23.8002
####ddddvvvvvvvvvvvvvdddd]cc	chr17:47787866-47788196(-)$1	330	239	267	23.7008
=========yyyyyyyyyyyyyyyy===	chr16:74486522-74486786(-)$1	264	56	84	23.1735
[bb"""ddddtttttttttttdddd444	chr9:131910180-131910432(+)$1	252	111	139	24.4625
dd[ffffffvvvvvvvvvvvvvffffff	chr2:128014778-128015071(-)$1	293	142	170	22.7693
ccc[ccc!!attttttttttta22ccc]	chr1:153932133-153932376(-)$1	243	84	112	24.4366
b:eeeeeayyyyyyyyyyyyyyyya]ee	chr1:228285652-228285944(+)$1	292	87	115	20.9369
[hhhhhhhhvvvvvvvvvvvvvhhhhhh	chr1:203277216-203277452(+)$1	236	17	45	22.1205
ddd[fffffftttttttttttffffff]	chr6:31694797-31695072(-)$1	275	63	91	23.2581
dd[ddddccctttttttttttccc]ddd	chr15:74701684-74701945(-)$1	261	41	69	24.4152
::ffffffauuuuuuuuuuuua]fffff	chr19:1815443-1815681(-)$1	238	1	29	20.9894
[a[ddddcccuuuuuuuuuuuuccc]dd	chrX:153664333-153664599(+)$1	266	154	182	24.8126
==========ttttttttttt=======	chr1:150547008-150547360(-)$1	352	33	61	25.8142
###bb[ddddtttttttttttdddd]bb	chr14:69847055-69847325(-)$1	270	196	224	24.3130
hhhhhdddduuuuuuuuuuuudddd22h	chr19:49611679-49611926(+)$1	247	119	147	23.2107
!dddd[ddddtttttttttttdddd]dd	chr5:177022655-177022883(+)$1	228	34	62	24.7450
hhhhhhddddtttttttttttdddd]hh	chr6:34555421-34555652(-)$1	231	154	182	24.1917
hh[ddddwwwwwwwwwwwwwwddddhhh	chr10:22032325-22032616(+)$1	291	75	103	20.9580
dd:ddddccctttttttttttccc]ddd	chr2:44115617-44115894(-)$1	277	99	127	23.1150
eeeeddddbbtttttttttttbb]dddd	chr19:18499689-18499958(+)$1	269	157	185	23.3297
f[eeeee[bbvvvvvvvvvvvvvbb]ee	chr7:44252496-44252807(+)$1	311	105	133	22.7445
eeeeeee[bbtttttttttttbb22eee	chr19:1434924-1435186(+)$1	262	175	203	23.1362
[eeeee[cccuuuuuuuuuuuuccc]ee	chr22:40805917-40806188(+)$1	271	103	131	24.7440
fff[bb[cccuuuuuuuuuuuuccc]bb	chr9:86275422-86275678(-)$1	256	198	226	23.8513
dd!!fffffftttttttttttffffffd	chr11:44641692-44641976(+)$1	284	242	270	23.4705
=====[cccvvvvvvvvvvvvvccc]==	chr2:97525466-97525723(-)$1	257	101	129	25.4190
h[a!!dddduuuuuuuuuuuudddd]a]	chr11:65486876-65487143(+)$1	267	128	156	24.5300
ddddbbddddtttttttttttdddd]bb	chr17:45922280-45922532(-)$1	252	35	63	23.6868
###ggggggguuuuuuuuuuuugggggg	chr1:212534376-212534623(+)$1	247	82	110	24.4679
=========yyyyyyyyyyyyyyyy===	chr6:32152757-32153040(-)$1	283	62	90	23.1735
fffff[cccvvvvvvvvvvvvvccc]ff	chr2:68405926-68406174(-)$1	248	84	112	24.0872
ggggg!!ccctttttttttttccc5555	chr16:337962-338236(-)$1	274	89	117	22.1983
eeeeeeeeeettttttttttteeeee]e	chr9:140137950-140138207(+)$1	257	183	211	23.6697
cc[eeeeeyyyyyyyyyyyyyyyyeeee	chr12:49414155-49414450(-)$1	295	192	220	22.0734
[gggggggbbuuuuuuuuuuuubb]ggg	chr17:38248550-38248839(+)$1	289	45	73	24.2447
fffff[cccvvvvvvvvvvvvvccc]ff	chr2:68405974-68406218(-)$1	244	128	156	24.0872
:gggggggvvvvvvvvvvvvvggggggg	chr8:101715388-101715613(-)$1	225	1	29	22.6883

#otherMatches

#Seq PSSM
UUGUAUAAAACUUUAAUUUCUUUUUUUU	chr19:42752301-42752556(-)$1	255	72	100	24.7029
CGAAGCCAGAAAUGCCUUAAACUGCAAC	chr1:991120-991386(+)$1	266	181	209	21.8972
CCACCUUCACCUUUAGCUUCUUGAAAAU	chr19:46029976-46030208(+)$1	232	201	229	23.6892
UGGGAGGAAGAUGAAAUCGAGCUGUCUU	chr21:45115721-45115976(+)$1	255	66	94	24.9619
UACAUGUAAAUAUUUCUGUAUUUUUUAU	chr6:153291604-153291849(-)$1	245	95	123	24.1375
ugggugggccucagGCCAUCUGGCCGCC	chr20:32245244-32245537(-)$1	293	217	245	22.6703
CAAAGAAAUUAAUGUAAAUAAGAUUUCU	chr12:1895692-1895965(+)$1	273	6	34	24.9797
AGGCUGGGAAACUUCAAAGCCUUCCCAG	chr6:31765237-31765505(-)$1	268	170	198	24.6796
CCUCUCCAUCUGCUGGCACCUGAGGAGA	chr17:38175432-38175693(-)$1	261	105	133	22.9534
GUCUCUAAGCCAACUUUAAUUGCUUAAA	chr5:74657048-74657368(+)$1	320	38	66	23.2704
GCAAAGGGGGUACCCACUUCUUUCCCUG	chrX:70459432-70459714(-)$1	282	7	35	22.7132
AACUUUUUUUUUGUUUUGUUUAAAAAUG	chr1:205682331-205682573(-)$1	242	198	226	23.4754
CCUCUAUUUUAAUUACUGCUAUAAAUAG	chr9:90345955-90346231(+)$1	276	229	257	24.2133
CUGACCAUGGAAGAUUGAGAGCCCAAGG	chr17:40463761-40464011(+)$1	250	59	87	24.1117
UGAGGCUGCAGCCUUUUAUUUAUGUUUU	chr11:57507707-57507956(+)$1	249	73	101	24.4378
AUUUCAAAUGGAAUAGAGUAUUUUGAUA	chr1:42642390-42642646(-)$1	256	105	133	23.1694
ACUCUGUGCACCAACCUAAAAAAUUACA	chr18:211193-211479(+)$1	286	231	259	21.8885
AACCCUUUGCUUCUUUAUUGUGCAGCUU	chr3:113528264-113528540(+)$1	276	89	117	25.3579
GGUGGGGGUGUUCACCUCUCUUCUCAUC	chr6:32083294-32083548(-)$1	254	173	201	22.5272
UUAUUGUAAUGUAAUAAAAAUAGUUACA	chr12:25358139-25358384(-)$1	245	172	200	25.3658
CUCCUGGGGCCCCUCCUUCCUGCCCUCA	chr11:64035105-64035373(+)$1	268	78	106	25.3273
UUUUACAGUGGUGGCUGAAUACAUUUUG	chr7:54819925-54820183(-)$1	258	62	90	26.0067
ACUGGUUUCUAAAAUGUUACAGGAAACU	chr4:17802302-17802580(-)$1	278	49	77	24.9797
UACUGUAGGUACCCAAGAUCCACCCCCA	chr5:177577311-177577542(+)$1	231	39	67	25.1430
AGUCCUGCCUUCACUCUCUCAUGGGUGG	chr3:48664404-48664747(-)$1	343	205	233	23.2431
UUUCCUUUAUAUGCCUUAAAAAUAACGG	chr16:56643215-56643482(+)$1	267	206	234	25.4427
UGUAUUGUGCUUAGAAAGGUUGCAGAUU	chr7:129473670-129473975(-)$1	305	130	158	25.1978
CCAGCCCGGCUGGUUUUGUAAGAUGCUG	chr15:91426485-91426739(+)$1	254	50	78	23.0017
GCCGCGCGAAAAGAUGGCGACCGCGGGG	chr1:155242902-155243208(-)$1	306	237	265	23.8002
AAAUGGCGACUCUAUACUCUCCGCCCGC	chr17:47787866-47788196(-)$1	330	239	267	23.7008
UUAAGAAAACCACCaaaaaaaaaaauuu	chr16:74486522-74486786(-)$1	264	56	84	23.1735
UGGAGAGGCCUUAGCUGUCCUGGCUGGU	chr9:131910180-131910432(+)$1	252	111	139	24.4625
UGUUAAUAUUUAAGGUGUAUUUAUGUUA	chr2:128014778-128015071(-)$1	293	142	170	22.7693
GAGGUUGGACACUAUACAUAAGGACAGG	chr1:153932133-153932376(-)$1	243	84	112	24.4366
UCUUGCCCUCUGCUUUACUCUCAUGUGG	chr1:228285652-228285944(+)$1	292	87	115	20.9369
GGGUUUUCUGAGGGGGGGGAGGAGGGAA	chr1:203277216-203277452(+)$1	236	17	45	22.1205
CUGGCCUUGGGGUACUGCUGGCCAGGGG	chr6:31694797-31695072(-)$1	275	63	91	23.2581
UGCUCCUAGCCUCCCACCUUCGCUCAGG	chr15:74701684-74701945(-)$1	261	41	69	24.4152
GAGACAGUCuuuuuuuauuuuguauugu	chr19:1815443-1815681(-)$1	238	1	29	20.9894
CGUAAGGGACAUGAAUUCUAGGGUCUCC	chrX:153664333-153664599(+)$1	266	154	182	24.8126
CAAAUCCUCCAAAAGGGAAAGGGAGGAU	chr1:150547008-150547360(-)$1	352	33	61	25.8142
UGUAUUAGAUGAAAUGUGAGGAUCUUGU	chr14:69847055-69847325(-)$1	270	196	224	24.3130
AAGGGUAGGUGUCUCAUUUGUUCUGGCC	chr19:49611679-49611926(+)$1	247	119	147	23.2107
ACAGUGUUACUGAUCAGGGAUGUGAGGC	chr5:177022655-177022883(+)$1	228	34	62	24.7450
AGUCAGCCUUCUCUCCCCCAUAAGGACU	chr6:34555421-34555652(-)$1	231	154	182	24.1917
UGUGGUUUAUUUUACUUAUUUAACCCAC	chr10:22032325-22032616(+)$1	291	75	103	20.9580
GAAAGCUUUGAAUUUUAUGCACAGCAGC	chr2:44115617-44115894(-)$1	277	99	127	23.1150
CCAAACAGCUGUAUUUAUAUAAGUCUGU	chr19:18499689-18499958(+)$1	269	157	185	23.3297
UGGGUUCGUACCAGCAAGUAGACUAGGA	chr7:44252496-44252807(+)$1	311	105	133	22.7445
CCAUCAGCACAAUAAAAAAAAGUCACUG	chr19:1434924-1435186(+)$1	262	175	203	23.1362
GUCUGUGCUCAGGAAGAGGGAAGGGGAU	chr22:40805917-40806188(+)$1	271	103	131	24.7440
AUUCAGGGGUGAAAAACAAAGAGCCGUU	chr9:86275422-86275678(-)$1	256	198	226	23.8513
GCUUCCUGGGGCAGGGGAGGACCCAGGG	chr11:44641692-44641976(+)$1	284	242	270	23.4705
GGGUGGGCCUGCUGUGGACAAUGGCAUA	chr2:97525466-97525723(-)$1	257	101	129	25.4190
GUGCUGGCUGCAAAAAUUUCUGGCUUCU	chr11:65486876-65487143(+)$1	267	128	156	24.5300
CCAAGCUCUGAGGUAUGCGGGUAGAGGC	chr17:45922280-45922532(-)$1	252	35	63	23.6868
UCUGUAUAUUUUUCCCUUUUAUAAUGUG	chr1:212534376-212534623(+)$1	247	82	110	24.4679
UUAAUUUUUUAAAAAACUACUAUUUGAA	chr6:32152757-32153040(-)$1	283	62	90	23.1735
UAUGUUGAAUGUUUAGUUUUUCUUCUGC	chr2:68405926-68406174(-)$1	248	84	112	24.0872
UCGGCAAAGUGGAGAAGGUGGACUGAUA	chr16:337962-338236(-)$1	274	89	117	22.1983
ACCACCAUUAAAGCAUUUUCAUAGUGUG	chr9:140137950-140138207(+)$1	257	183	211	23.6697
AGAGCAAAUGUAAAACUACUAAUUUUUG	chr12:49414155-49414450(-)$1	295	192	220	22.0734
AGGCGCUACUGAAUGUAUGAGAAGCUGG	chr17:38248550-38248839(+)$1	289	45	73	24.2447
UAUGUUGAAUGUUUAGUUUUUCUUCUGC	chr2:68405974-68406218(-)$1	244	128	156	24.0872
UAAUUUGUUUUUUUAACAUUUACAGAUU	chr8:101715388-101715613(-)$1	225	1	29	22.6883

#DB
((....((((...........))))...	chr19:42752301-42752556(-)$1	1	72	100	24.7029
((..((.((............))))..)	chr1:991120-991386(+)$1	1	181	209	21.8972
(((..((((............))))..)	chr19:46029976-46030208(+)$1	1	201	229	23.6892
(((((((.((...........)).))))	chr21:45115721-45115976(+)$1	1	66	94	24.9619
)(((((((((.............)))))	chr6:153291604-153291849(-)$1	1	95	123	24.1375
(((((((.((...........)))))))	chr20:32245244-32245537(-)$1	1	217	245	22.6703
((.(((((((...........)))))))	chr12:1895692-1895965(+)$1	1	6	34	24.9797
.(((((((((...........)))))))	chr6:31765237-31765505(-)$1	1	170	198	24.6796
(((((((.((...........)))))))	chr17:38175432-38175693(-)$1	1	105	133	22.9534
((((.(((((...........)))))..	chr5:74657048-74657368(+)$1	1	38	66	23.2704
((((((((((.............)))).	chrX:70459432-70459714(-)$1	1	7	35	22.7132
((((.(((((...........))))).)	chr1:205682331-205682573(-)$1	1	198	226	23.4754
))(((((((.............))))))	chr9:90345955-90346231(+)$1	1	229	257	24.2133
))((((.(((............))).))	chr17:40463761-40464011(+)$1	1	59	87	24.1117
.((((..(((............)))...	chr11:57507707-57507956(+)$1	1	73	101	24.4378
((.(((((.............))))).)	chr1:42642390-42642646(-)$1	1	105	133	23.1694
.(((((((................))))	chr18:211193-211479(+)$1	1	231	259	21.8885
((....((((...........)))).))	chr3:113528264-113528540(+)$1	1	89	117	25.3579
((.(((((((..............))))	chr6:32083294-32083548(-)$1	1	173	201	22.5272
((((((((((............))))))	chr12:25358139-25358384(-)$1	1	172	200	25.3658
((.(((((((...........)))).))	chr11:64035105-64035373(+)$1	1	78	106	25.3273
(((((.((((...........)))).))	chr7:54819925-54820183(-)$1	1	62	90	26.0067
((.(((((((...........)))))))	chr4:17802302-17802580(-)$1	1	49	77	24.9797
..(((..(((...........)))..))	chr5:177577311-177577542(+)$1	1	39	67	25.1430
((..((((((............))))))	chr3:48664404-48664747(-)$1	1	205	233	23.2431
..(((.((((...........)))).))	chr16:56643215-56643482(+)$1	1	206	234	25.4427
((...(.(((...........))).)..	chr7:129473670-129473975(-)$1	1	130	158	25.1978
((((((((((..............))))	chr15:91426485-91426739(+)$1	1	50	78	23.0017
(((.((((.............)))).))	chr1:155242902-155243208(-)$1	1	237	265	23.8002
....((((.............)))).))	chr17:47787866-47788196(-)$1	1	239	267	23.7008
(((((((((................)))	chr16:74486522-74486786(-)$1	1	56	84	23.1735
.((...((((...........))))...	chr9:131910180-131910432(+)$1	1	111	139	24.4625
((.((((((.............))))))	chr2:128014778-128015071(-)$1	1	142	170	22.7693
(((.(((..(...........)..))).	chr1:153932133-153932376(-)$1	1	84	112	24.4366
).((((((................).))	chr1:228285652-228285944(+)$1	1	87	115	20.9369
.((((((((.............))))))	chr1:203277216-203277452(+)$1	1	17	45	22.1205
(((.((((((...........)))))).	chr6:31694797-31695072(-)$1	1	63	91	23.2581
((.(((((((...........))).)))	chr15:74701684-74701945(-)$1	1	41	69	24.4152
..(((((((............).)))))	chr19:1815443-1815681(-)$1	1	1	29	20.9894
.(.(((((((............))).))	chrX:153664333-153664599(+)$1	1	154	182	24.8126
((((((((((...........)))))))	chr1:150547008-150547360(-)$1	1	33	61	25.8142
...((.((((...........)))).))	chr14:69847055-69847325(-)$1	1	196	224	24.3130
(((((((((............))))..)	chr19:49611679-49611926(+)$1	1	119	147	23.2107
.((((.((((...........)))).))	chr5:177022655-177022883(+)$1	1	34	62	24.7450
((((((((((...........)))).))	chr6:34555421-34555652(-)$1	1	154	182	24.1917
((.((((..............)))))))	chr10:22032325-22032616(+)$1	1	75	103	20.9580
)).(((((((...........))).)))	chr2:44115617-44115894(-)$1	1	99	127	23.1150
((((((((((...........)).))))	chr19:18499689-18499958(+)$1	1	157	185	23.3297
(.(((((.((.............)).))	chr7:44252496-44252807(+)$1	1	105	133	22.7445
(((((((.((...........))..)))	chr19:1434924-1435186(+)$1	1	175	203	23.1362
.(((((.(((............))).))	chr22:40805917-40806188(+)$1	1	103	131	24.7440
(((.((.(((............))).))	chr9:86275422-86275678(-)$1	1	198	226	23.8513
((..((((((...........)))))))	chr11:44641692-44641976(+)$1	1	242	270	23.4705
(((((.(((.............))).))	chr2:97525466-97525723(-)$1	1	101	129	25.4190
(.(..((((............)))).).	chr11:65486876-65487143(+)$1	1	128	156	24.5300
((((((((((...........)))).))	chr17:45922280-45922532(-)$1	1	35	63	23.6868
...(((((((............))))))	chr1:212534376-212534623(+)$1	1	82	110	24.4679
(((((((((................)))	chr6:32152757-32153040(-)$1	1	62	90	23.1735
(((((.(((.............))).))	chr2:68405926-68406174(-)$1	1	84	112	24.0872
(((((..(((...........)))....	chr16:337962-338236(-)$1	1	89	117	22.1983
((((((((((...........))))).)	chr9:140137950-140138207(+)$1	1	183	211	23.6697
((.(((((................))))	chr12:49414155-49414450(-)$1	1	192	220	22.0734
.(((((((((............)).)))	chr17:38248550-38248839(+)$1	1	45	73	24.2447
(((((.(((.............))).))	chr2:68405974-68406218(-)$1	1	128	156	24.0872
.(((((((.............)))))))	chr8:101715388-101715613(-)$1	1	1	29	22.6883

#PSSM
e : 0.12	d : 0.12	= : 0.12	f : 0.09	[ : 0.09	h : 0.07	g : 0.07	c : 0.07	b : 0.04	: : 0.04	! : 0.04	# : 0.04	i : 0.01	& : 0.01	
e : 0.13	d : 0.13	g : 0.12	= : 0.12	f : 0.09	h : 0.07	c : 0.07	i : 0.04	# : 0.04	b : 0.03	! : 0.03	: : 0.03	[ : 0.03	a : 0.01	
[ : 0.15	= : 0.10	d : 0.09	f : 0.09	g : 0.09	e : 0.09	# : 0.07	h : 0.06	c : 0.06	! : 0.04	i : 0.04	b : 0.03	" : 0.01	: : 0.01	a : 0.01	
g : 0.15	d : 0.12	e : 0.12	= : 0.10	f : 0.09	! : 0.07	h : 0.06	[ : 0.06	# : 0.04	i : 0.04	c : 0.04	b : 0.03	" : 0.03	
g : 0.15	d : 0.15	f : 0.12	e : 0.10	= : 0.10	b : 0.06	h : 0.06	c : 0.06	i : 0.04	# : 0.03	! : 0.03	[ : 0.03	" : 0.03	
d : 0.16	g : 0.13	e : 0.13	[ : 0.10	f : 0.09	= : 0.07	b : 0.04	i : 0.04	h : 0.04	! : 0.04	# : 0.03	c : 0.03	a : 0.01	" : 0.01	
d : 0.32	g : 0.12	e : 0.12	f : 0.09	[ : 0.07	= : 0.07	c : 0.06	i : 0.04	! : 0.04	h : 0.03	
d : 0.26	c : 0.20	g : 0.12	[ : 0.07	e : 0.07	= : 0.07	f : 0.07	i : 0.03	b : 0.01	! : 0.01	a : 0.01	h : 0.01	w : 0.01	
d : 0.21	c : 0.20	b : 0.12	g : 0.07	= : 0.07	v : 0.06	f : 0.06	e : 0.04	y : 0.04	i : 0.03	! : 0.01	h : 0.01	a : 0.01	w : 0.01	
d : 0.16	v : 0.15	c : 0.15	b : 0.10	u : 0.07	y : 0.07	g : 0.06	e : 0.04	= : 0.04	f : 0.04	i : 0.03	a : 0.01	w : 0.01	
t : 0.46	u : 0.21	v : 0.20	y : 0.07	w : 0.04	
t : 0.46	u : 0.21	v : 0.20	y : 0.07	w : 0.04	
t : 0.46	u : 0.21	v : 0.20	y : 0.07	w : 0.04	
t : 0.46	u : 0.21	v : 0.20	y : 0.07	w : 0.04	
t : 0.46	u : 0.21	v : 0.20	y : 0.07	w : 0.04	
t : 0.46	u : 0.21	v : 0.20	y : 0.07	w : 0.04	
t : 0.46	u : 0.21	v : 0.20	y : 0.07	w : 0.04	
t : 0.46	u : 0.21	v : 0.20	y : 0.07	w : 0.04	
t : 0.46	u : 0.21	v : 0.20	y : 0.07	w : 0.04	
t : 0.46	u : 0.21	v : 0.20	y : 0.07	w : 0.04	
t : 0.46	u : 0.21	v : 0.20	y : 0.07	w : 0.04	
d : 0.24	v : 0.13	u : 0.13	b : 0.09	y : 0.07	c : 0.07	e : 0.06	g : 0.04	w : 0.03	a : 0.03	f : 0.03	i : 0.01	= : 0.01	
d : 0.24	c : 0.20	b : 0.10	g : 0.07	y : 0.07	e : 0.06	f : 0.06	v : 0.04	w : 0.03	= : 0.03	i : 0.01	2 : 0.01	h : 0.01	] : 0.01	
d : 0.26	c : 0.20	f : 0.09	g : 0.07	y : 0.07	e : 0.06	b : 0.04	] : 0.03	i : 0.03	h : 0.03	w : 0.03	= : 0.03	2 : 0.03	
d : 0.27	c : 0.13	g : 0.10	f : 0.09	e : 0.07	] : 0.06	i : 0.04	= : 0.04	b : 0.03	h : 0.03	2 : 0.03	y : 0.03	a : 0.01	5 : 0.01	
] : 0.30	g : 0.12	f : 0.09	e : 0.09	= : 0.07	2 : 0.06	d : 0.06	4 : 0.04	i : 0.04	h : 0.04	a : 0.01	c : 0.01	5 : 0.01	
g : 0.13	f : 0.12	d : 0.10	= : 0.10	c : 0.09	e : 0.07	2 : 0.06	h : 0.06	4 : 0.04	i : 0.04	] : 0.04	b : 0.04	3 : 0.01	a : 0.01	5 : 0.01	
g : 0.15	d : 0.12	= : 0.10	f : 0.09	e : 0.09	b : 0.07	h : 0.07	c : 0.07	4 : 0.04	i : 0.04	] : 0.04	5 : 0.03	2 : 0.01	3 : 0.01	

#score	1544.373170309334
#seq	65
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_transcript_m3_run1.txt

#BEAR
eeeeeyyyyyyyyyyyyyyyye	chr19:16038938-16039177(-)$1	239	131	153	22.2122
[ddddyyyyyyyyyyyyyyyyd	chr13:37493159-37493399(-)$1	240	122	144	22.0020
ddddddtttttttttttdddd]	chr2:32222230-32222538(-)$1	308	51	73	22.5786
!ddddwwwwwwwwwwwwwwddd	chr6:160806226-160806494(+)$1	268	178	200	21.4237
dddccctttttttttttccc]d	chr8:100091015-100091271(+)$1	256	54	76	22.4137
:ddddtttttttttttddddFF	chr2:75744787-75745035(-)$1	248	73	95	20.1715
fffffuuuuuuuuuuuufffff	chr10:131279541-131279804(+)$1	263	231	253	21.9873
cccccuuuuuuuuuuuuccc]c	chr22:47162823-47163149(+)$1	326	104	126	22.8363
b[ddddtttttttttttdddd]	chr20:60616008-60616248(-)$1	240	106	128	22.4051
!!ddddtttttttttttdddd2	chr22:24466182-24466528(+)$1	346	12	34	22.5302
eeeeettttttttttteeeee>	chr1:27025395-27025639(+)$1	244	164	186	22.1467
ggggguuuuuuuuuuuuggggg	chr16:70584036-70584375(+)$1	339	252	274	22.7613
ffyyyyyyyyyyyyyyyyffff	chr3:49554763-49555069(+)$1	306	50	72	20.1296
fffffuuuuuuuuuuuufffff	chr2:101477075-101477348(+)$1	273	48	70	21.9873
:eeeeettttttttttteeeee	chr9:34198443-34198731(+)$1	288	56	78	21.8340
$ddddtttttttttttdddd22	chr6:157161437-157161702(+)$1	265	170	192	21.4000
ggggggtttttttttttggggg	chr22:50178442-50178699(-)$1	257	26	48	21.8674
eeeeeuuuuuuuuuuuueeeee	chr18:74175513-74175776(-)$1	263	138	160	23.6840
dd[ccctttttttttttccc]d	chr6:131323208-131323504(-)$1	296	232	254	22.2459
[ddddvvvvvvvvvvvvvdddd	chr8:117885709-117885989(-)$1	280	78	100	22.5942
eeeeeyyyyyyyyyyyyyyyye	chr2:239241062-239241336(+)$1	274	30	52	22.2122
cccccctttttttttttccc::	chr2:177174640-177174891(+)$1	251	127	149	20.4713
fbb[bbtttttttttttbb]bb	chr17:56068933-56069178(-)$1	245	179	201	19.8120
eeeeeyyyyyyyyyyyyyyyye	chr1:27033201-27033437(+)$1	236	68	90	22.2122
gggggvvvvvvvvvvvvvgggg	chr2:65621354-65621618(-)$1	264	211	233	21.9669
""ccctttttttttttccc333	chr20:60765023-60765336(+)$1	313	279	301	21.6302
hhhhhhttttttttttthhhhh	chr8:124377241-124377492(-)$1	251	185	207	19.6716
d[cccuuuuuuuuuuuucccdd	chr3:176858018-176858304(-)$1	286	133	155	23.0272
!!cccuuuuuuuuuuuuccc]c	chr12:79972148-79972474(-)$1	326	251	273	23.0865
[ddddvvvvvvvvvvvvvdddd	chr5:95282057-95282314(-)$1	257	87	109	22.5942
eeeeewwwwwwwwwwwwwweee	chr15:67393703-67393945(+)$1	242	40	62	21.7032
fffffwwwwwwwwwwwwwwfff	chr12:46641307-46641555(-)$1	248	10	32	20.2578
ggggguuuuuuuuuuuuggggg	chr7:155476471-155476728(+)$1	257	27	49	22.7613
b!!bbtttttttttttbb]bb]	chr14:63976779-63977087(-)$1	308	163	185	19.9336
ddddyyyyyyyyyyyyyyyydd	chr19:15489263-15489545(-)$1	282	257	279	21.5489
f[ddddtttttttttttdddd]	chr16:78552883-78553126(+)$1	243	180	202	22.6616
[ddddvvvvvvvvvvvvvdddd	chr11:46576137-46576386(-)$1	249	93	115	22.5942
eeeeevvvvvvvvvvvvveeee	chr6:4844464-4844713(+)$1	249	4	26	22.8422
ffddddtttttttttttdddd]	chr21:44263124-44263379(-)$1	255	61	83	22.5311
gddddyyyyyyyyyyyyyyyyd	chr6:31370708-31370997(+)$1	289	52	74	21.9088
eeeeettttttttttteeeee:	chr7:94596051-94596297(+)$1	246	221	243	21.4548
fffffuuuuuuuuuuuufffff	chr6:4786483-4786772(+)$1	289	20	42	21.9873
eeeeeuuuuuuuuuuuueeeee	chr3:196998778-196999100(-)$1	322	212	234	23.6840
======ttttttttttt=====	chr5:78245937-78246178(-)$1	241	134	156	22.1172
d[ddddtttttttttttdddd]	chr17:44246749-44246985(-)$1	236	69	91	22.6073
eeeeeuuuuuuuuuuuueeeee	chr20:60611460-60611716(-)$1	256	64	86	23.6840
eeeeewwwwwwwwwwwwwweee	chr11:996139-996411(+)$1	272	197	219	21.7032
eeeeeuuuuuuuuuuuueeeee	chr3:41270393-41270647(+)$1	254	192	214	23.6840
eee[awwwwwwwwwwwwwwaee	chr20:30704105-30704427(+)$1	322	253	275	21.2744
[dddduuuuuuuuuuuudddd]	chr19:338442-338729(-)$1	287	195	217	23.5370
fffffvvvvvvvvvvvvvffff	chr14:31658148-31658431(-)$1	283	41	63	21.2569
=====uuuuuuuuuuuu=====	chr21:45336489-45336758(+)$1	269	149	171	22.9818
eeeeevvvvvvvvvvvvveeee	chr1:8472030-8472288(-)$1	258	183	205	22.8422
eeeeeuuuuuuuuuuuueeeee	chr1:2003178-2003434(+)$1	256	8	30	23.6840
[ddddvvvvvvvvvvvvvdddd	chr12:102106751-102107025(+)$1	274	9	31	22.5942
geeeeettttttttttteeeee	chr17:80225727-80225980(-)$1	253	82	104	22.8778
#dddduuuuuuuuuuuudddd5	chr17:1462906-1463133(-)$1	227	30	52	22.4670
d[cccuuuuuuuuuuuucccdd	chr3:187997815-187998156(+)$1	341	305	327	23.0272
eeeeeyyyyyyyyyyyyyyyye	chr22:50204256-50204630(-)$1	374	4	26	22.2122
eeeeeuuuuuuuuuuuueeeee	chr6:128587575-128587931(-)$1	356	259	281	23.6840

#otherMatches

#Seq PSSM
UCAGAGUCUUUUUGGUUCUUGU	chr19:16038938-16039177(-)$1	239	131	153	22.2122
CUCCUGAGAACUAACCUACAAA	chr13:37493159-37493399(-)$1	240	122	144	22.0020
uacuaaaaauauaaaaauuagc	chr2:32222230-32222538(-)$1	308	51	73	22.5786
CCCAGUUACUGUAUUUUUUCUG	chr6:160806226-160806494(+)$1	268	178	200	21.4237
gcuggugauaguggcaaacuga	chr8:100091015-100091271(+)$1	256	54	76	22.4137
UGCAGAAAAUGUUUAGCUGCUC	chr2:75744787-75745035(-)$1	248	73	95	20.1715
gcauugucucuucuuuaaaugc	chr10:131279541-131279804(+)$1	263	231	253	21.9873
UCCUCGAUUAGCCUGGAGAGUG	chr22:47162823-47163149(+)$1	326	104	126	22.8363
ccccaguugugugcucccuggu	chr20:60616008-60616248(-)$1	240	106	128	22.4051
GUGGCUGAGGCUCAAAUGGCUU	chr22:24466182-24466528(+)$1	346	12	34	22.5302
CUGGAAUAACAAAAAGUCUAGU	chr1:27025395-27025639(+)$1	244	164	186	22.1467
CAUUUUUCUCCUUUAUUAAAUG	chr16:70584036-70584375(+)$1	339	252	274	22.7613
AUUAUAAUUUAAUGCUUUGUUC	chr3:49554763-49555069(+)$1	306	50	72	20.1296
cuauaucaguauggguuuguag	chr2:101477075-101477348(+)$1	273	48	70	21.9873
acuggcacaggacccaagccag	chr9:34198443-34198731(+)$1	288	56	78	21.8340
ACAUUUCCAAACUACUAAUGAA	chr6:157161437-157161702(+)$1	265	170	192	21.4000
CAUGGUGGCUUUUGAGAAUCAU	chr22:50178442-50178699(-)$1	257	26	48	21.8674
ACUGGCUCCCUAGUACCCUAGU	chr18:74175513-74175776(-)$1	263	138	160	23.6840
AACAGGUAGUUAAAGUUCUUUU	chr6:131323208-131323504(-)$1	296	232	254	22.2459
UCUGAUUUGUUAGUGUCUUCAG	chr8:117885709-117885989(-)$1	280	78	100	22.5942
GGAGGUUUAUAUUGUUCAUUCC	chr2:239241062-239241336(+)$1	274	30	52	22.2122
uacugguuguuuucuuuccaug	chr2:177174640-177174891(+)$1	251	127	149	20.4713
UGUCACUUUGAAAAUAUGUUGC	chr17:56068933-56069178(-)$1	245	179	201	19.8120
UGUCUUUUUCUCUUGCCCUUUG	chr1:27033201-27033437(+)$1	236	68	90	22.2122
AUCAUCUUCCUAAACCAAAUGA	chr2:65621354-65621618(-)$1	264	211	233	21.9669
cugggucccucgaauccccucc	chr20:60765023-60765336(+)$1	313	279	301	21.6302
auuuuuuugucaguucuaggag	chr8:124377241-124377492(-)$1	251	185	207	19.6716
UCACCUGGUAACCUGUUGGUAG	chr3:176858018-176858304(-)$1	286	133	155	23.0272
ccagcuuuguucuuuuugcuca	chr12:79972148-79972474(-)$1	326	251	273	23.0865
GCUGGCUAUUUGAACAAUUUGG	chr5:95282057-95282314(-)$1	257	87	109	22.5942
UUGGAUGUCAGAAAAAGGUUUC	chr15:67393703-67393945(+)$1	242	40	62	21.7032
uugccuucauuucaacuuuggu	chr12:46641307-46641555(-)$1	248	10	32	20.2578
AAGUUAACAUAGAUUAAGAUUU	chr7:155476471-155476728(+)$1	257	27	49	22.7613
UUUUCUCCUAUUCGUUGAUGCU	chr14:63976779-63977087(-)$1	308	163	185	19.9336
CUUCUUUUCAUUCUUAGUUUGG	chr19:15489263-15489545(-)$1	282	257	279	21.5489
gaucucaucucuaaaacgaggc	chr16:78552883-78553126(+)$1	243	180	202	22.6616
ACUGGCAUUUUCUCCUCAUCAG	chr11:46576137-46576386(-)$1	249	93	115	22.5942
uugguuuuguucauuguuacua	chr6:4844464-4844713(+)$1	249	4	26	22.8422
ugagcuuguucggauguagcuc	chr21:44263124-44263379(-)$1	255	61	83	22.5311
GAGUCAAAGGGAGGAGAAGGAG	chr6:31370708-31370997(+)$1	289	52	74	21.9088
gguaggcuauuaauuacugccu	chr7:94596051-94596297(+)$1	246	221	243	21.4548
AUAUGAAAUAUUUUAAACAUAU	chr6:4786483-4786772(+)$1	289	20	42	21.9873
ggaguguggaucauaaaacucc	chr3:196998778-196999100(-)$1	322	212	234	23.6840
ucuguguuuguuguuuucgcag	chr5:78245937-78246178(-)$1	241	134	156	22.1172
UUCCUUGACUGUAUUAAAAGGU	chr17:44246749-44246985(-)$1	236	69	91	22.6073
uguauuauccuuuuuauauaca	chr20:60611460-60611716(-)$1	256	64	86	23.6840
UGCCUGUUGGAAGCUGGGAAGG	chr11:996139-996411(+)$1	272	197	219	21.7032
auuguaaccuuguauuaacagu	chr3:41270393-41270647(+)$1	254	192	214	23.6840
GAGUCUUUCAUGUGUCUCUGUU	chr20:30704105-30704427(+)$1	322	253	275	21.2744
agacaugguguugaauuuguca	chr19:338442-338729(-)$1	287	195	217	23.5370
cauaugguagguuagaggauau	chr14:31658148-31658431(-)$1	283	41	63	21.2569
UUUUAGGGAGUUGCAGAUAAAA	chr21:45336489-45336758(+)$1	269	149	171	22.9818
ACUUGGUUCUUCUUCCCACAAG	chr1:8472030-8472288(-)$1	258	183	205	22.8422
CAGGAUAAAUGCGUAUUUCCUG	chr1:2003178-2003434(+)$1	256	8	30	23.6840
ugggauacuagauuuuuuuccc	chr12:102106751-102107025(+)$1	274	9	31	22.5942
CCAUGAUAGGGUGUGAUUCGUG	chr17:80225727-80225980(-)$1	253	82	104	22.8778
UGGAGCCCAUUUUGUUUUUCCU	chr17:1462906-1463133(-)$1	227	30	52	22.4670
uuaggaagaaauugaugccuau	chr3:187997815-187998156(+)$1	341	305	327	23.0272
ggagcuauuaugaacaaugcug	chr22:50204256-50204630(-)$1	374	4	26	22.2122
ucaagauucaaaucaggcuuga	chr6:128587575-128587931(-)$1	356	259	281	23.6840

#DB
(((((................)	chr19:16038938-16039177(-)$1	1	131	153	22.2122
.((((................)	chr13:37493159-37493399(-)$1	1	122	144	22.0020
((((((...........)))).	chr2:32222230-32222538(-)$1	1	51	73	22.5786
.((((..............)))	chr6:160806226-160806494(+)$1	1	178	200	21.4237
((((((...........))).)	chr8:100091015-100091271(+)$1	1	54	76	22.4137
.((((...........))))))	chr2:75744787-75745035(-)$1	1	73	95	20.1715
(((((............)))))	chr10:131279541-131279804(+)$1	1	231	253	21.9873
(((((............))).)	chr22:47162823-47163149(+)$1	1	104	126	22.8363
(.((((...........)))).	chr20:60616008-60616248(-)$1	1	106	128	22.4051
..((((...........)))).	chr22:24466182-24466528(+)$1	1	12	34	22.5302
(((((...........))))).	chr1:27025395-27025639(+)$1	1	164	186	22.1467
(((((............)))))	chr16:70584036-70584375(+)$1	1	252	274	22.7613
((................))))	chr3:49554763-49555069(+)$1	1	50	72	20.1296
(((((............)))))	chr2:101477075-101477348(+)$1	1	48	70	21.9873
.(((((...........)))))	chr9:34198443-34198731(+)$1	1	56	78	21.8340
.((((...........))))..	chr6:157161437-157161702(+)$1	1	170	192	21.4000
((((((...........)))))	chr22:50178442-50178699(-)$1	1	26	48	21.8674
(((((............)))))	chr18:74175513-74175776(-)$1	1	138	160	23.6840
((.(((...........))).)	chr6:131323208-131323504(-)$1	1	232	254	22.2459
.((((.............))))	chr8:117885709-117885989(-)$1	1	78	100	22.5942
(((((................)	chr2:239241062-239241336(+)$1	1	30	52	22.2122
)))(((...........)))..	chr2:177174640-177174891(+)$1	1	127	149	20.4713
)((.((...........)).))	chr17:56068933-56069178(-)$1	1	179	201	19.8120
(((((................)	chr1:27033201-27033437(+)$1	1	68	90	22.2122
(((((.............))))	chr2:65621354-65621618(-)$1	1	211	233	21.9669
..(((...........)))...	chr20:60765023-60765336(+)$1	1	279	301	21.6302
((((((...........)))))	chr8:124377241-124377492(-)$1	1	185	207	19.6716
(.(((............)))))	chr3:176858018-176858304(-)$1	1	133	155	23.0272
..(((............))).)	chr12:79972148-79972474(-)$1	1	251	273	23.0865
.((((.............))))	chr5:95282057-95282314(-)$1	1	87	109	22.5942
(((((..............)))	chr15:67393703-67393945(+)$1	1	40	62	21.7032
(((((..............)))	chr12:46641307-46641555(-)$1	1	10	32	20.2578
(((((............)))))	chr7:155476471-155476728(+)$1	1	27	49	22.7613
(..((...........)).)).	chr14:63976779-63977087(-)$1	1	163	185	19.9336
((((................))	chr19:15489263-15489545(-)$1	1	257	279	21.5489
(.((((...........)))).	chr16:78552883-78553126(+)$1	1	180	202	22.6616
.((((.............))))	chr11:46576137-46576386(-)$1	1	93	115	22.5942
(((((.............))))	chr6:4844464-4844713(+)$1	1	4	26	22.8422
((((((...........)))).	chr21:44263124-44263379(-)$1	1	61	83	22.5311
(((((................)	chr6:31370708-31370997(+)$1	1	52	74	21.9088
(((((...........))))).	chr7:94596051-94596297(+)$1	1	221	243	21.4548
(((((............)))))	chr6:4786483-4786772(+)$1	1	20	42	21.9873
(((((............)))))	chr3:196998778-196999100(-)$1	1	212	234	23.6840
((((((...........)))))	chr5:78245937-78246178(-)$1	1	134	156	22.1172
(.((((...........)))).	chr17:44246749-44246985(-)$1	1	69	91	22.6073
(((((............)))))	chr20:60611460-60611716(-)$1	1	64	86	23.6840
(((((..............)))	chr11:996139-996411(+)$1	1	197	219	21.7032
(((((............)))))	chr3:41270393-41270647(+)$1	1	192	214	23.6840
(((.(..............)))	chr20:30704105-30704427(+)$1	1	253	275	21.2744
.((((............)))).	chr19:338442-338729(-)$1	1	195	217	23.5370
(((((.............))))	chr14:31658148-31658431(-)$1	1	41	63	21.2569
(((((............)))))	chr21:45336489-45336758(+)$1	1	149	171	22.9818
(((((.............))))	chr1:8472030-8472288(-)$1	1	183	205	22.8422
(((((............)))))	chr1:2003178-2003434(+)$1	1	8	30	23.6840
.((((.............))))	chr12:102106751-102107025(+)$1	1	9	31	22.5942
)(((((...........)))))	chr17:80225727-80225980(-)$1	1	82	104	22.8778
.((((............)))).	chr17:1462906-1463133(-)$1	1	30	52	22.4670
(.(((............)))))	chr3:187997815-187998156(+)$1	1	305	327	23.0272
(((((................)	chr22:50204256-50204630(-)$1	1	4	26	22.2122
(((((............)))))	chr6:128587575-128587931(-)$1	1	259	281	23.6840

#PSSM
e : 0.28	f : 0.15	d : 0.11	[ : 0.09	g : 0.09	! : 0.05	: : 0.03	c : 0.03	b : 0.03	= : 0.03	$ : 0.01	" : 0.01	h : 0.01	# : 0.01	
e : 0.31	d : 0.24	f : 0.11	[ : 0.08	g : 0.06	! : 0.05	c : 0.03	= : 0.03	b : 0.01	" : 0.01	h : 0.01	
e : 0.31	d : 0.31	c : 0.09	f : 0.08	g : 0.06	= : 0.03	y : 0.01	[ : 0.01	b : 0.01	h : 0.01	! : 0.01	
e : 0.30	d : 0.30	c : 0.13	f : 0.08	g : 0.06	[ : 0.03	= : 0.03	y : 0.01	h : 0.01	b : 0.01	
e : 0.30	d : 0.28	c : 0.13	f : 0.08	g : 0.06	y : 0.03	b : 0.03	= : 0.03	h : 0.01	a : 0.01	
u : 0.30	y : 0.13	v : 0.13	d : 0.09	t : 0.09	w : 0.08	c : 0.05	e : 0.03	g : 0.01	b : 0.01	h : 0.01	= : 0.01	
t : 0.35	u : 0.30	y : 0.13	v : 0.13	w : 0.08	
t : 0.35	u : 0.30	y : 0.13	v : 0.13	w : 0.08	
t : 0.35	u : 0.30	y : 0.13	v : 0.13	w : 0.08	
t : 0.35	u : 0.30	y : 0.13	v : 0.13	w : 0.08	
t : 0.35	u : 0.30	y : 0.13	v : 0.13	w : 0.08	
t : 0.35	u : 0.30	y : 0.13	v : 0.13	w : 0.08	
t : 0.35	u : 0.30	y : 0.13	v : 0.13	w : 0.08	
t : 0.35	u : 0.30	y : 0.13	v : 0.13	w : 0.08	
t : 0.35	u : 0.30	y : 0.13	v : 0.13	w : 0.08	
t : 0.35	u : 0.30	y : 0.13	v : 0.13	w : 0.08	
u : 0.30	t : 0.24	y : 0.13	v : 0.13	w : 0.08	d : 0.03	e : 0.03	c : 0.01	b : 0.01	
d : 0.16	e : 0.16	y : 0.13	c : 0.13	v : 0.13	w : 0.08	f : 0.05	g : 0.05	b : 0.03	= : 0.03	h : 0.01	
d : 0.23	e : 0.19	c : 0.13	y : 0.11	w : 0.08	f : 0.08	g : 0.06	= : 0.03	b : 0.01	h : 0.01	] : 0.01	
d : 0.24	e : 0.23	y : 0.11	c : 0.11	f : 0.09	g : 0.06	= : 0.03	] : 0.01	3 : 0.01	h : 0.01	b : 0.01	a : 0.01	
d : 0.26	e : 0.24	y : 0.09	f : 0.09	] : 0.06	g : 0.06	b : 0.03	= : 0.03	F : 0.01	2 : 0.01	: : 0.01	3 : 0.01	h : 0.01	
e : 0.28	d : 0.19	] : 0.11	f : 0.09	g : 0.06	c : 0.03	2 : 0.03	: : 0.03	= : 0.03	F : 0.01	> : 0.01	b : 0.01	3 : 0.01	h : 0.01	5 : 0.01	

#score	1330.001101500339
#seq	60
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_transcript_m2_run2.txt

#BEAR
a[cccuuuuuuuuuuuuccc]a]	chr16:89036905-89037149(-)$1	244	97	120	23.7798
======ttttttttttt======	chr6:44081132-44081397(-)$1	265	94	117	22.3967
ffffftttttttttttffffff]	chr10:72509366-72509581(+)$1	215	43	66	21.6221
$$cccwwwwwwwwwwwwwwccc7	chr11:118344461-118344743(+)$1	282	89	112	20.1449
ggggggtttttttttttgggggg	chr1:39896276-39896531(+)$1	255	89	112	22.0883
cyyyyyyyyyyyyyyyyccc777	chr5:79946943-79947195(-)$1	252	174	197	18.8357
fffffftttttttttttffffff	chr2:86371079-86371328(-)$1	249	37	60	22.0062
fffffftttttttttttffffff	chr22:19092385-19092673(-)$1	288	117	140	22.0062
hhhhwwwwwwwwwwwwwwhhhhh	chr16:88729221-88729466(-)$1	245	154	177	19.5357
d[ddddtttttttttttdddddd	chr1:31440905-31441175(-)$1	270	121	144	21.4855
:dddduuuuuuuuuuuuddddee	chr10:73576684-73576929(-)$1	245	86	109	21.4491
[eeeeettttttttttteeeee]	chr3:33706242-33706507(-)$1	265	58	81	22.4862
iiiiiitttttttttttiiiiii	chr10:73576084-73576332(-)$1	248	196	219	22.0079
dddwwwwwwwwwwwwwwdddd33	chr5:135416105-135416330(-)$1	225	186	209	20.6569
ffffftttttttttttffffff2	chr4:889716-889990(-)$1	274	85	108	21.3289
eeeeeuuuuuuuuuuuueeeee4	chr7:119436881-119437143(-)$1	262	56	79	23.1302
eeeeevvvvvvvvvvvvveeeee	chr19:58367296-58367560(+)$1	264	77	100	22.4281
eeeeeuuuuuuuuuuuueeeeeC	chr2:27578352-27578603(-)$1	251	199	222	21.9321
fyyyyyyyyyyyyyyyyffffff	chr5:143543574-143543830(-)$1	256	197	220	20.4060
c[cccvvvvvvvvvvvvvccccc	chr1:22262963-22263171(-)$1	208	81	104	22.9536
:ddddtttttttttttddddeee	chrX:153197521-153197831(-)$1	310	3	26	20.2365
d[cccuuuuuuuuuuuuccc22d	chr3:15878189-15878486(-)$1	297	26	49	22.8149
eeeeevvvvvvvvvvvvveeeee	chr1:10479966-10480214(+)$1	248	198	221	22.4281
eeeevvvvvvvvvvvvveeeee]	chr5:140699405-140699653(-)$1	248	45	68	22.8372
f[cccuuuuuuuuuuuuccc]ff	chr11:62285494-62285752(-)$1	258	63	86	23.7411
cc!!bbtttttttttttbb22cc	chr19:19020843-19021091(-)$1	248	180	203	21.1243
ffffvvvvvvvvvvvvvffffff	chr3:9519600-9519847(+)$1	247	165	188	22.4674
eeeeeuuuuuuuuuuuueeeee:	chr11:75115432-75115639(+)$1	207	0	23	22.1955
Hddddtttttttttttddddccc	chr16:89654593-89654868(+)$1	275	56	79	20.5315
a[ccctttttttttttccca]==	chr16:72821493-72821757(-)$1	264	22	45	22.4315
eeewwwwwwwwwwwwwweeeee]	chr14:107092600-107092822(+)$1	222	26	49	21.3590
[cccvvvvvvvvvvvvvccc]cc	chr12:112016499-112016777(-)$1	278	225	248	23.0973
eeeeevvvvvvvvvvvvveeeee	chr16:47326431-47326692(-)$1	261	210	233	22.4281
c[ddddtttttttttttddddcc	chr2:172397352-172397630(+)$1	278	83	106	21.9570
$ddddvvvvvvvvvvvvvdddd6	chr2:71653837-71654099(+)$1	262	47	70	21.2867
[cccvvvvvvvvvvvvvccc]gg	chr5:134116720-134116959(+)$1	239	198	221	23.1052
c[cccwwwwwwwwwwwwwwccc]	chr12:56498355-56498640(+)$1	285	212	235	21.3460
:eeeeettttttttttteeeee:	chr4:184161675-184161934(+)$1	259	28	51	20.4926
fyyyyyyyyyyyyyyyyffffff	chr4:13603898-13604173(-)$1	275	5	28	20.4060
fffffuuuuuuuuuuuuffffff	chr17:37309874-37310123(-)$1	249	153	176	22.7944
ff[bbuuuuuuuuuuuubbffff	chr9:134013739-134013952(+)$1	213	143	166	22.2919
ccccbbtttttttttttbb]ccc	chr1:19401030-19401274(-)$1	244	170	193	21.6401
###ccctttttttttttccc333	chrX:47062956-47063197(+)$1	241	76	99	22.6529
eeewwwwwwwwwwwwwweeeee]	chr21:11181330-11181592(+)$1	262	201	224	21.3590
!!cccuuuuuuuuuuuuccc]cc	chr7:110971690-110971942(-)$1	252	105	128	23.7085
e[ayyyyyyyyyyyyyyyya]ee	chr6:111136358-111136629(-)$1	271	71	94	20.5717
fffffftttttttttttffffff	chr12:133379834-133380090(-)$1	256	150	173	22.0062
iiiiwwwwwwwwwwwwwwiiiii	chr6:31797494-31797751(+)$1	257	188	211	21.2336
ffffvvvvvvvvvvvvvffffff	chr1:149857118-149857356(-)$1	238	167	190	22.4674
hhhhhhttttttttttthhhhhh	chr17:80372975-80373288(-)$1	313	283	306	19.6444
dyyyyyyyyyyyyyyyydddd66	chr12:112685721-112686050(-)$1	329	271	294	19.1516
bb[bbvvvvvvvvvvvvvbb]bb	chr11:124506293-124506539(+)$1	246	21	44	20.7209

#otherMatches

#Seq PSSM
GCUCCACAGUUUUCCCAGGAACU	chr16:89036905-89037149(-)$1	244	97	120	23.7798
UGAGCCCUUGCUUUUCUGGUUUG	chr6:44081132-44081397(-)$1	265	94	117	22.3967
acagggagcguguugaccugucu	chr10:72509366-72509581(+)$1	215	43	66	21.6221
aggaaaaagggaUCAGAAAUUCA	chr11:118344461-118344743(+)$1	282	89	112	20.1449
CUCCUUAGGAAUUAAAGAAGGAG	chr1:39896276-39896531(+)$1	255	89	112	22.0883
GACAUUUAACUAAAACCCCUGCG	chr5:79946943-79947195(-)$1	252	174	197	18.8357
GAGCAGGUUUACAAGUACUGUUC	chr2:86371079-86371328(-)$1	249	37	60	22.0062
gccCUCUGUCCCUUCUUGAGGGC	chr22:19092385-19092673(-)$1	288	117	140	22.0062
cucgacagacggggaaacugagg	chr16:88729221-88729466(-)$1	245	154	177	19.5357
ACUUAGACUAUAGUUCACUGAUG	chr1:31440905-31441175(-)$1	270	121	144	21.4855
AGCCCUGACAUGUGCUUGGGCAC	chr10:73576684-73576929(-)$1	245	86	109	21.4491
agcugauuuuuguauuuuuggua	chr3:33706242-33706507(-)$1	265	58	81	22.4862
GAAGUUGCUAUUAAAUGGACUUC	chr10:73576084-73576332(-)$1	248	196	219	22.0079
UUAUUUUUUAUCCCUUUUAACUU	chr5:135416105-135416330(-)$1	225	186	209	20.6569
uauuauuuuguauuuuugguaga	chr4:889716-889990(-)$1	274	85	108	21.3289
ggucaggcagcauucaaugacca	chr7:119436881-119437143(-)$1	262	56	79	23.1302
CCUUGGGAGGAGGAUGGGCAAGG	chr19:58367296-58367560(+)$1	264	77	100	22.4281
GUAuuuuuuuuuuuuuugauacg	chr2:27578352-27578603(-)$1	251	199	222	21.9321
AGCCUUUAAAUUUUAAAUGUUCU	chr5:143543574-143543830(-)$1	256	197	220	20.4060
uugaaucaaucccugccuuucac	chr1:22262963-22263171(-)$1	208	81	104	22.9536
CUCUCGAGCCAUGAUAGAGAACU	chrX:153197521-153197831(-)$1	310	3	26	20.2365
uaauuuuuuguauuuuuaguaga	chr3:15878189-15878486(-)$1	297	26	49	22.8149
CUUUUUCCUUUACUCAAUAAAAG	chr1:10479966-10480214(+)$1	248	198	221	22.4281
AGUAAAAGCAAAGAUGAUGCUCC	chr5:140699405-140699653(-)$1	248	45	68	22.8372
CAUUAAACUUCCCAAAAUGAAGC	chr11:62285494-62285752(-)$1	258	63	86	23.7411
UGAUCCUGCUCUUCCUUGGCCCA	chr19:19020843-19021091(-)$1	248	180	203	21.1243
AUUUGAACUUUCACAAGAGAUGU	chr3:9519600-9519847(+)$1	247	165	188	22.4674
UGGUUUGUCCUUGUUUUAGCCAU	chr11:75115432-75115639(+)$1	207	0	23	22.1955
CGCGUGUUAUUUGCAGAUGCGCU	chr16:89654593-89654868(+)$1	275	56	79	20.5315
GAGGAGCCACCUGAAGUCCCUCU	chr16:72821493-72821757(-)$1	264	22	45	22.4315
UGAUUCUUUAUGUAACUUUAGUU	chr14:107092600-107092822(+)$1	222	26	49	21.3590
uuuaauuugcauuucccuaaugc	chr12:112016499-112016777(-)$1	278	225	248	23.0973
gugcaacauaaaaaaaacugcac	chr16:47326431-47326692(-)$1	261	210	233	22.4281
ggcuaauuuuuguauuuuuagua	chr2:172397352-172397630(+)$1	278	83	106	21.9570
AACUAAAUAUGGAAGAAAUGGUA	chr2:71653837-71654099(+)$1	262	47	70	21.2867
GACCAGGAUGCCAUGGAGGUGAU	chr5:134116720-134116959(+)$1	239	198	221	23.1052
UGGUCGUGACCAAGUAUAAGAUG	chr12:56498355-56498640(+)$1	285	212	235	21.3460
CCUCUGAGAUUGUGGUACAGAGC	chr4:184161675-184161934(+)$1	259	28	51	20.4926
UGAAACUGUCAAACUUAAGCAUA	chr4:13603898-13604173(-)$1	275	5	28	20.4060
AUACUGUUUUUGUCCUGGGUGUC	chr17:37309874-37310123(-)$1	249	153	176	22.7944
gcaugaaccacuacauccagccU	chr9:134013739-134013952(+)$1	213	143	166	22.2919
GGGCCUGUACAUACCUAGGAGCC	chr1:19401030-19401274(-)$1	244	170	193	21.6401
AUGGACACCAUUGAGAAGUCAAA	chrX:47062956-47063197(+)$1	241	76	99	22.6529
AUGUUCUUAGCAAAUUCCAUGUC	chr21:11181330-11181592(+)$1	262	201	224	21.3590
uuggauuucccuuuauuuccugg	chr7:110971690-110971942(-)$1	252	105	128	23.7085
CGCggaggaggaggaggaagagg	chr6:111136358-111136629(-)$1	271	71	94	20.5717
UUCACAGAUUUCCUAAGUGUGAA	chr12:133379834-133380090(-)$1	256	150	173	22.0062
UGAGGUGGACUGUUGGGACUCAA	chr6:31797494-31797751(+)$1	257	188	211	21.2336
UGCGCCUUUUUCUAAUUUGUAGA	chr1:149857118-149857356(-)$1	238	167	190	22.4674
UCAAAACCAGAAAGAUUUUUUGA	chr17:80372975-80373288(-)$1	313	283	306	19.6444
GUAAAAUAAUGUCAUUUCCUAAA	chr12:112685721-112686050(-)$1	329	271	294	19.1516
GAGAGAUUCAGUAACCACCUGUC	chr11:124506293-124506539(+)$1	246	21	44	20.7209

#DB
(.(((............))).).	chr16:89036905-89037149(-)$1	1	97	120	23.7798
((((((...........))))))	chr6:44081132-44081397(-)$1	1	94	117	22.3967
(((((...........)))))).	chr10:72509366-72509581(+)$1	1	43	66	21.6221
..(((..............))).	chr11:118344461-118344743(+)$1	1	89	112	20.1449
((((((...........))))))	chr1:39896276-39896531(+)$1	1	89	112	22.0883
(................)))...	chr5:79946943-79947195(-)$1	1	174	197	18.8357
((((((...........))))))	chr2:86371079-86371328(-)$1	1	37	60	22.0062
((((((...........))))))	chr22:19092385-19092673(-)$1	1	117	140	22.0062
((((..............)))))	chr16:88729221-88729466(-)$1	1	154	177	19.5357
(.((((...........))))))	chr1:31440905-31441175(-)$1	1	121	144	21.4855
.((((............))))((	chr10:73576684-73576929(-)$1	1	86	109	21.4491
.(((((...........))))).	chr3:33706242-33706507(-)$1	1	58	81	22.4862
((((((...........))))))	chr10:73576084-73576332(-)$1	1	196	219	22.0079
(((..............))))..	chr5:135416105-135416330(-)$1	1	186	209	20.6569
(((((...........)))))).	chr4:889716-889990(-)$1	1	85	108	21.3289
(((((............))))).	chr7:119436881-119437143(-)$1	1	56	79	23.1302
(((((.............)))))	chr19:58367296-58367560(+)$1	1	77	100	22.4281
(((((............))))))	chr2:27578352-27578603(-)$1	1	199	222	21.9321
(................))))))	chr5:143543574-143543830(-)$1	1	197	220	20.4060
(.(((.............)))))	chr1:22262963-22263171(-)$1	1	81	104	22.9536
.((((...........))))(((	chrX:153197521-153197831(-)$1	1	3	26	20.2365
(.(((............)))..)	chr3:15878189-15878486(-)$1	1	26	49	22.8149
(((((.............)))))	chr1:10479966-10480214(+)$1	1	198	221	22.4281
((((.............))))).	chr5:140699405-140699653(-)$1	1	45	68	22.8372
(.(((............))).))	chr11:62285494-62285752(-)$1	1	63	86	23.7411
((..((...........))..))	chr19:19020843-19021091(-)$1	1	180	203	21.1243
((((.............))))))	chr3:9519600-9519847(+)$1	1	165	188	22.4674
(((((............))))).	chr11:75115432-75115639(+)$1	1	0	23	22.1955
(((((...........))))(((	chr16:89654593-89654868(+)$1	1	56	79	20.5315
(.(((...........)))).))	chr16:72821493-72821757(-)$1	1	22	45	22.4315
(((..............))))).	chr14:107092600-107092822(+)$1	1	26	49	21.3590
.(((.............))).))	chr12:112016499-112016777(-)$1	1	225	248	23.0973
(((((.............)))))	chr16:47326431-47326692(-)$1	1	210	233	22.4281
(.((((...........))))))	chr2:172397352-172397630(+)$1	1	83	106	21.9570
.((((.............)))).	chr2:71653837-71654099(+)$1	1	47	70	21.2867
.(((.............))).))	chr5:134116720-134116959(+)$1	1	198	221	23.1052
(.(((..............))).	chr12:56498355-56498640(+)$1	1	212	235	21.3460
.(((((...........))))).	chr4:184161675-184161934(+)$1	1	28	51	20.4926
(................))))))	chr4:13603898-13604173(-)$1	1	5	28	20.4060
(((((............))))))	chr17:37309874-37310123(-)$1	1	153	176	22.7944
((.((............))))))	chr9:134013739-134013952(+)$1	1	143	166	22.2919
)(((((...........)).)))	chr1:19401030-19401274(-)$1	1	170	193	21.6401
...(((...........)))...	chrX:47062956-47063197(+)$1	1	76	99	22.6529
(((..............))))).	chr21:11181330-11181592(+)$1	1	201	224	21.3590
..(((............))).))	chr7:110971690-110971942(-)$1	1	105	128	23.7085
(.(................).))	chr6:111136358-111136629(-)$1	1	71	94	20.5717
((((((...........))))))	chr12:133379834-133380090(-)$1	1	150	173	22.0062
((((..............)))))	chr6:31797494-31797751(+)$1	1	188	211	21.2336
((((.............))))))	chr1:149857118-149857356(-)$1	1	167	190	22.4674
((((((...........))))))	chr17:80372975-80373288(-)$1	1	283	306	19.6444
(................))))..	chr12:112685721-112686050(-)$1	1	271	294	19.1516
((.((.............)).))	chr11:124506293-124506539(+)$1	1	21	44	20.7209

#PSSM
f : 0.23	e : 0.19	c : 0.11	d : 0.07	: : 0.05	[ : 0.05	a : 0.03	$ : 0.03	h : 0.03	i : 0.03	= : 0.01	g : 0.01	H : 0.01	# : 0.01	! : 0.01	b : 0.01	
e : 0.21	[ : 0.17	f : 0.17	d : 0.09	y : 0.07	c : 0.07	h : 0.03	i : 0.03	= : 0.01	$ : 0.01	g : 0.01	# : 0.01	! : 0.01	b : 0.01	
c : 0.21	e : 0.21	f : 0.15	d : 0.13	y : 0.07	h : 0.03	i : 0.03	[ : 0.03	= : 0.01	g : 0.01	! : 0.01	# : 0.01	a : 0.01	
c : 0.23	e : 0.17	f : 0.15	d : 0.11	y : 0.09	w : 0.05	h : 0.03	i : 0.03	b : 0.03	= : 0.01	g : 0.01	! : 0.01	
c : 0.17	e : 0.15	f : 0.11	d : 0.11	y : 0.09	w : 0.09	v : 0.09	b : 0.07	= : 0.01	g : 0.01	i : 0.01	h : 0.01	
v : 0.21	u : 0.19	w : 0.13	t : 0.09	y : 0.09	f : 0.05	d : 0.03	e : 0.03	b : 0.03	= : 0.01	g : 0.01	i : 0.01	c : 0.01	h : 0.01	
t : 0.36	v : 0.21	u : 0.19	w : 0.13	y : 0.09	
t : 0.36	v : 0.21	u : 0.19	w : 0.13	y : 0.09	
t : 0.36	v : 0.21	u : 0.19	w : 0.13	y : 0.09	
t : 0.36	v : 0.21	u : 0.19	w : 0.13	y : 0.09	
t : 0.36	v : 0.21	u : 0.19	w : 0.13	y : 0.09	
t : 0.36	v : 0.21	u : 0.19	w : 0.13	y : 0.09	
t : 0.36	v : 0.21	u : 0.19	w : 0.13	y : 0.09	
t : 0.36	v : 0.21	u : 0.19	w : 0.13	y : 0.09	
t : 0.36	v : 0.21	u : 0.19	w : 0.13	y : 0.09	
t : 0.36	v : 0.21	u : 0.19	w : 0.13	y : 0.09	
t : 0.26	v : 0.21	u : 0.19	w : 0.13	y : 0.09	f : 0.03	d : 0.03	c : 0.01	
f : 0.19	c : 0.17	e : 0.15	d : 0.13	v : 0.11	w : 0.07	b : 0.05	= : 0.01	g : 0.01	i : 0.01	y : 0.01	h : 0.01	
e : 0.21	c : 0.19	f : 0.19	d : 0.15	b : 0.07	w : 0.03	h : 0.03	i : 0.03	= : 0.01	g : 0.01	y : 0.01	
c : 0.21	f : 0.21	e : 0.21	d : 0.15	h : 0.03	i : 0.03	a : 0.03	= : 0.01	g : 0.01	2 : 0.01	] : 0.01	b : 0.01	
e : 0.23	f : 0.21	] : 0.15	d : 0.11	c : 0.09	h : 0.03	i : 0.03	2 : 0.03	= : 0.01	g : 0.01	7 : 0.01	3 : 0.01	
e : 0.26	f : 0.23	c : 0.17	= : 0.03	g : 0.03	h : 0.03	d : 0.03	i : 0.03	3 : 0.03	a : 0.01	7 : 0.01	2 : 0.01	6 : 0.01	b : 0.01	
f : 0.19	] : 0.13	c : 0.13	e : 0.11	= : 0.03	7 : 0.03	g : 0.03	h : 0.03	d : 0.03	i : 0.03	3 : 0.03	: : 0.03	6 : 0.03	2 : 0.01	4 : 0.01	C : 0.01	b : 0.01	

#score	1129.2112992333946
#seq	52
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_CDS_m3_run1.txt

#BEAR
ddddddddddoooooodddd22ddd	chr7:99057627-99057900(-)$1	273	126	151	9.8445
fff####ddddmmmmdddd22ffff	chr17:26904926-26905151(-)$1	225	163	188	13.1637
d!!ccc[ddddmmmmdddd]ccc33	chr1:228680736-228681023(+)$1	287	226	251	13.8285
===####ddddllldddd4444===	chr4:2043660-2043878(+)$1	218	9	34	12.5281
:eeeee[ddddmmmmdddd]eeeee	chr12:49724550-49724820(+)$1	270	57	82	11.8771
ee[ddddddddmmmmdddd]dddd]	chr11:67379742-67380028(+)$1	286	208	233	12.4007
4444cccddddmmmmdddd:ggggg	chr11:64785734-64785951(+)$1	217	126	151	10.4303
bffffffddddmmmmdddd4444ff	chr2:85808694-85808987(+)$1	293	186	211	12.3225
bb[bb"""ddddllldddd333bbb	chr2:98263453-98263703(+)$1	250	146	171	12.0123
2bb:ddddddddllldddd333ddd	chr20:34288659-34288887(+)$1	228	147	172	10.7136
f!!bb"""cccmmmmccc333bb22	chr19:49611410-49611720(+)$1	310	153	178	9.4337
eeee[a[cccooooooccc]a]eee	chr6:30668090-30668369(-)$1	279	109	134	8.7923
[dddd!!ddddoooooodddd]ddd	chr19:7684538-7684793(-)$1	255	43	68	10.3493
eeeeea[ddddmmmmdddd]a]eee	chr7:75615656-75615926(+)$1	270	20	45	13.7407
::eeeeeddddmmmmdddd22eeee	chr16:67862284-67862572(-)$1	288	145	170	10.6739
eeeee[eeeeemmmmeeeee333ee	chr16:767122-767406(+)$1	284	159	184	9.1520
fff!!bbddddmmmmdddd333bb2	chr9:140005018-140005310(-)$1	292	199	224	12.7953
dd[bb[a[ddddllldddd]a22bb	chr6:42932720-42932970(-)$1	250	155	180	11.1947
ccc[a[ddddnnnnndddd]a]ccc	chr12:56666744-56666987(-)$1	243	17	42	11.3440
dddddddddddmmmmdddd4444dd	chr1:46654471-46654727(-)$1	256	185	210	13.0961
f[cccccccccmmmmccc333ccc2	chr6:30880977-30881232(+)$1	255	59	84	9.5882
####ddddddddllldddd]dddde	chr11:62601262-62601515(-)$1	253	101	126	11.3135
"dddda[ddddmmmmdddd]a]ddd	chr11:67379546-67379769(+)$1	223	68	93	13.9133
eeeccc!!ddddllldddd333ccc	chr16:30103974-30104217(-)$1	243	80	105	12.8703
:ccc"""ddddnnnnndddd4444c	chr8:67968693-67968940(-)$1	247	121	146	10.9710
beeeeeddddnnnnndddd333eee	chrX:47088033-47088273(+)$1	240	112	137	10.9680
dccc"""ddddnnnnnddddccc]d	chrX:153195462-153195783(-)$1	321	197	222	10.9688
ddccc!!ddddmmmmdddd22ccc2	chr16:88782750-88782974(-)$1	224	152	177	13.8402
bb[ccc[ddddmmmmddddccc]bb	chr3:10157322-10157543(+)$1	221	173	198	12.1147
eeeee[ddddnnnnndddd333eee	chr7:150773274-150773536(+)$1	262	98	123	11.4068
####bb[ddddmmmmdddd]bbfff	chr19:18545753-18545990(-)$1	237	192	217	12.3317
ddda[cccddddllldddd]ccc]a	chr19:12907835-12908074(-)$1	239	97	122	11.5065
gggggg[ddddmmmmddddgggggg	chr14:105219485-105219753(+)$1	268	19	44	12.2659
eeeee!!ddddnnnnnddddeeeee	chr19:18702855-18703134(+)$1	279	76	101	9.9833
cc!!bb[ddddllldddd]bbccc]	chr22:35817209-35817487(+)$1	278	111	136	10.2344
###a"""ddddmmmmdddd]a4444	chr22:39917890-39918101(+)$1	211	93	118	14.8087
[ccc"""ddddmmmmdddd]ccc]c	chrX:48652446-48652672(+)$1	226	35	60	14.1044
dddddbbddddmmmmdddd4444bb	chr7:75615168-75615397(+)$1	229	194	219	12.4421
c!!bb!!ddddmmmmdddd22bb22	chr6:32084188-32084445(-)$1	257	51	76	12.9566
d[bb"""ddddmmmmddddbbdddd	chr1:44442717-44442992(+)$1	275	218	243	12.2541
###a"""ddddmmmmdddd]a4444	chr22:39917901-39918135(+)$1	234	82	107	14.8087
ffff[a[ddddmmmmdddd]a]fff	chr11:63990837-63991122(+)$1	285	75	100	13.3621
dd[a[a[ddddmmmmddddaa]ddd	chr19:13054472-13054779(+)$1	307	249	274	13.7250
a[ccc"""cccmmmmccc]ccc]a]	chr19:18418224-18418452(-)$1	228	120	145	9.4943
b[a!!a[ddddmmmmdddd]a22a]	chr6:33679266-33679536(-)$1	270	2	27	13.9870
!dddd"""ddddllldddd333ddd	chr19:12845256-12845502(-)$1	246	152	177	13.1188
ccc[bb[ddddmmmmdddd]bb]cc	chr9:131772297-131772541(-)$1	244	49	74	12.6309
ff[ddddddddmmmmdddd22dddd	chr19:15491039-15491308(-)$1	269	178	203	12.5285
!ccc[a[ddddmmmmdddd]a]ccc	chr15:91496825-91497125(+)$1	300	266	291	14.3106
b[ccc[ddddnnnnndddd]ccc]b	chr16:1821083-1821337(-)$1	254	5	30	10.6638
:dddd"""ddddllldddd22dddd	chr19:17387524-17387801(+)$1	277	14	39	11.3571

#otherMatches

#Seq PSSM
AGCUGCCAAGCUGGAUCUUGAUGCG	chr7:99057627-99057900(-)$1	273	126	151	9.8445
UACAAGGCCUGGCCCCAGGAGGUAC	chr17:26904926-26905151(-)$1	225	163	188	13.1637
CAUGCUGCUGCAGGUGCGGGAGCCC	chr1:228680736-228681023(+)$1	287	226	251	13.8285
UCCAUGACGACGACGUCGGAUGGGG	chr4:2043660-2043878(+)$1	218	9	34	12.5281
CUGCUGCAGUCAGUGGGCUCCAGCA	chr12:49724550-49724820(+)$1	270	57	82	11.8771
CCUGCGUCUAUCCAUGUGGAAUGCU	chr11:67379742-67380028(+)$1	286	208	233	12.4007
ACCAUCCUGAAGAAGUUCAAUGGGG	chr11:64785734-64785951(+)$1	217	126	151	10.4303
AACCCUCCAUAAAUGUGUGCCAAGA	chr2:85808694-85808987(+)$1	293	186	211	12.3225
ACUGGUAAGGAGAAACUCCCUUCUG	chr2:98263453-98263703(+)$1	250	146	171	12.0123
UGGGAUGGGCAUCCGAUGCUAACCA	chr20:34288659-34288887(+)$1	228	147	172	10.7136
gaggugggggcgguggccaggacAA	chr19:49611410-49611720(+)$1	310	153	178	9.4337
GGAGAUGUCAUCCACCUGAGAACUC	chr6:30668090-30668369(-)$1	279	109	134	8.7923
GUCCCUAGGAGUGACGCCUCCCGGG	chr19:7684538-7684793(-)$1	255	43	68	10.3493
GAUGUGCAGAACACCUUCUACGACA	chr7:75615656-75615926(+)$1	270	20	45	13.7407
UGCUGGCCGCAAGACUGUGAAGCCA	chr16:67862284-67862572(-)$1	288	145	170	10.6739
UGGGGAGGCCCGGCUGGGCUGUGCC	chr16:767122-767406(+)$1	284	159	184	9.1520
CUCAGCCUCUGAGCACAGGACUGGA	chr9:140005018-140005310(-)$1	292	199	224	12.7953
CAAGUAUGCUCUGUUAGAGGAAGAC	chr6:42932720-42932970(-)$1	250	155	180	11.1947
GGCACAGCUCAUCUGGAGCCGAGCC	chr12:56666744-56666987(-)$1	243	17	42	11.3440
GGCUGGCUCUUACUCAGGAAACUGC	chr1:46654471-46654727(-)$1	256	185	210	13.0961
GUCUGGGGCAGUAUUCUGAGUCCCU	chr6:30880977-30881232(+)$1	255	59	84	9.5882
UCUAGGGCGUCUACUGGGCUGUCUG	chr11:62601262-62601515(-)$1	253	101	126	11.3135
UGGCACGUUUCGUGAGGGGGGAUGC	chr11:67379546-67379769(+)$1	223	68	93	13.9133
CCCGCCCCUCCUUUCAGGAACAGGC	chr16:30103974-30104217(-)$1	243	80	105	12.8703
AGGACCUUCUGAGUACCAGACUAUU	chr8:67968693-67968940(-)$1	247	121	146	10.9710
CGUGGUGGACACCGAGUUCUAAGCC	chrX:47088033-47088273(+)$1	240	112	137	10.9680
CCGAGCUCAGGAGAGGCCUGUCGCG	chrX:153195462-153195783(-)$1	321	197	222	10.9688
CACUGCACGGCGGCAGCUGGCCAGC	chr16:88782750-88782974(-)$1	224	152	177	13.8402
CUCGUUCGGUCAGCGGGCCAGCAAG	chr3:10157322-10157543(+)$1	221	173	198	12.1147
GCUGGAUGCUAACGAGGCAGAGCCG	chr7:150773274-150773536(+)$1	262	98	123	11.4068
ACCCGCUGCCACCAAUGGCUGCACC	chr19:18545753-18545990(-)$1	237	192	217	12.3317
GUCCCGCUGGCUGGAAGCCUGGCAG	chr19:12907835-12908074(-)$1	239	97	122	11.5065
GCCGGGGAGCUGCGUAGCUCCCGGC	chr14:105219485-105219753(+)$1	268	19	44	12.2659
UGGAGGCGAUCAGCGAGGUUCUCCA	chr19:18702855-18703134(+)$1	279	76	101	9.9833
GCCAUUGUGCGCAUCGCGGAAGCCC	chr22:35817209-35817487(+)$1	278	111	136	10.2344
CCAGAAAGUUUAACAAAACCCGACC	chr22:39917890-39918101(+)$1	211	93	118	14.8087
CCCCUACUGGGCUCACCCACGGGCU	chrX:48652446-48652672(+)$1	226	35	60	14.1044
UUCUCCCGGGAGCAGUCCCACAAGG	chr7:75615168-75615397(+)$1	229	194	219	12.4421
GCUUGUUGGCAUCUUUGCCUCCACC	chr6:32084188-32084445(-)$1	257	51	76	12.9566
CCUUACCCUCCUUCUGGAGAAGCUG	chr1:44442717-44442992(+)$1	275	218	243	12.2541
CCAGAAAGUUUAACAAAACCCGACC	chr22:39917901-39918135(+)$1	234	82	107	14.8087
GCUGGAUGAAGACCUCUUCCUGCAG	chr11:63990837-63991122(+)$1	285	75	100	13.3621
CUGUAGAGAGGCCUGCCUCCAGGGC	chr19:13054472-13054779(+)$1	307	249	274	13.7250
CGGGCACAGGCAGAGGCCAGCCAGA	chr19:18418224-18418452(-)$1	228	120	145	9.4943
AGGCUUAGUGCGCAAGCGCCAUUCG	chr6:33679266-33679536(-)$1	270	2	27	13.9870
acgaggaggugucgggcgcgggUUC	chr19:12845256-12845502(-)$1	246	152	177	13.1188
CCAGGCCGAGCAGGAGCUCCGCGUG	chr9:131772297-131772541(-)$1	244	49	74	12.6309
GCAGAGGGCGUGCCGGCGCAGCCUC	chr19:15491039-15491308(-)$1	269	178	203	12.5285
CUGAGUCAGCGGCCACGUUCAGUCA	chr15:91496825-91497125(+)$1	300	266	291	14.3106
GCGGCGCUUCGAGAGGAAGGGCUUC	chr16:1821083-1821337(-)$1	254	5	30	10.6638
UCCCAGAGUCUGAGGCAGAAAUGGG	chr19:17387524-17387801(+)$1	277	14	39	11.3571

#DB
((((((((((......))))..)))	chr7:99057627-99057900(-)$1	1	126	151	9.8445
(((....((((....))))..))))	chr17:26904926-26905151(-)$1	1	163	188	13.1637
(..(((.((((....)))).)))..	chr1:228680736-228681023(+)$1	1	226	251	13.8285
(((....((((...))))....)))	chr4:2043660-2043878(+)$1	1	9	34	12.5281
.(((((.((((....)))).)))))	chr12:49724550-49724820(+)$1	1	57	82	11.8771
((.((((((((....)))).)))).	chr11:67379742-67380028(+)$1	1	208	233	12.4007
....)))((((....)))).(((((	chr11:64785734-64785951(+)$1	1	126	151	10.4303
)((((((((((....))))....))	chr2:85808694-85808987(+)$1	1	186	211	12.3225
((.((...((((...))))...)))	chr2:98263453-98263703(+)$1	1	146	171	12.0123
.)).((((((((...))))...)))	chr20:34288659-34288887(+)$1	1	147	172	10.7136
(..((...(((....)))...))..	chr19:49611410-49611720(+)$1	1	153	178	9.4337
((((.(.(((......))).).)))	chr6:30668090-30668369(-)$1	1	109	134	8.7923
.((((..((((......)))).)))	chr19:7684538-7684793(-)$1	1	43	68	10.3493
((((((.((((....)))).).)))	chr7:75615656-75615926(+)$1	1	20	45	13.7407
..(((((((((....))))..))))	chr16:67862284-67862572(-)$1	1	145	170	10.6739
(((((.(((((....)))))...))	chr16:767122-767406(+)$1	1	159	184	9.1520
(((..((((((....))))...)).	chr9:140005018-140005310(-)$1	1	199	224	12.7953
((.((.(.((((...)))).)..))	chr6:42932720-42932970(-)$1	1	155	180	11.1947
(((.(.((((.....)))).).)))	chr12:56666744-56666987(-)$1	1	17	42	11.3440
(((((((((((....))))....))	chr1:46654471-46654727(-)$1	1	185	210	13.0961
(.(((((((((....)))...))).	chr6:30880977-30881232(+)$1	1	59	84	9.5882
....((((((((...)))).)))))	chr11:62601262-62601515(-)$1	1	101	126	11.3135
.(((((.((((....)))).).)))	chr11:67379546-67379769(+)$1	1	68	93	13.9133
)))(((..((((...))))...)))	chr16:30103974-30104217(-)$1	1	80	105	12.8703
.(((...((((.....))))....)	chr8:67968693-67968940(-)$1	1	121	146	10.9710
)(((((((((.....))))...)))	chrX:47088033-47088273(+)$1	1	112	137	10.9680
((((...((((.....))))))).)	chrX:153195462-153195783(-)$1	1	197	222	10.9688
(((((..((((....))))..))).	chr16:88782750-88782974(-)$1	1	152	177	13.8402
((.(((.((((....))))))).))	chr3:10157322-10157543(+)$1	1	173	198	12.1147
(((((.((((.....))))...)))	chr7:150773274-150773536(+)$1	1	98	123	11.4068
....((.((((....)))).)))))	chr19:18545753-18545990(-)$1	1	192	217	12.3317
((((.(((((((...)))).))).)	chr19:12907835-12908074(-)$1	1	97	122	11.5065
((((((.((((....))))))))))	chr14:105219485-105219753(+)$1	1	19	44	12.2659
(((((..((((.....)))))))))	chr19:18702855-18703134(+)$1	1	76	101	9.9833
((..((.((((...)))).))))).	chr22:35817209-35817487(+)$1	1	111	136	10.2344
...(...((((....)))).)....	chr22:39917890-39918101(+)$1	1	93	118	14.8087
.(((...((((....)))).))).)	chrX:48652446-48652672(+)$1	1	35	60	14.1044
(((((((((((....))))....))	chr7:75615168-75615397(+)$1	1	194	219	12.4421
(..((..((((....))))..))..	chr6:32084188-32084445(-)$1	1	51	76	12.9566
(.((...((((....))))))))))	chr1:44442717-44442992(+)$1	1	218	243	12.2541
...(...((((....)))).)....	chr22:39917901-39918135(+)$1	1	82	107	14.8087
((((.(.((((....)))).).)))	chr11:63990837-63991122(+)$1	1	75	100	13.3621
((.(.(.((((....)))))).)))	chr19:13054472-13054779(+)$1	1	249	274	13.7250
(.(((...(((....))).))).).	chr19:18418224-18418452(-)$1	1	120	145	9.4943
(.(..(.((((....)))).)..).	chr6:33679266-33679536(-)$1	1	2	27	13.9870
.((((...((((...))))...)))	chr19:12845256-12845502(-)$1	1	152	177	13.1188
(((.((.((((....)))).)).))	chr9:131772297-131772541(-)$1	1	49	74	12.6309
((.((((((((....))))..))))	chr19:15491039-15491308(-)$1	1	178	203	12.5285
.(((.(.((((....)))).).)))	chr15:91496825-91497125(+)$1	1	266	291	14.3106
(.(((.((((.....)))).))).)	chr16:1821083-1821337(-)$1	1	5	30	10.6638
.((((...((((...))))..))))	chr19:17387524-17387801(+)$1	1	14	39	11.3571

#PSSM
d : 0.19	e : 0.13	f : 0.11	b : 0.11	: : 0.07	c : 0.07	# : 0.07	[ : 0.03	! : 0.03	= : 0.01	4 : 0.01	2 : 0.01	" : 0.01	g : 0.01	a : 0.01	
d : 0.21	e : 0.17	c : 0.13	f : 0.09	[ : 0.09	# : 0.07	! : 0.05	b : 0.05	= : 0.01	4 : 0.01	: : 0.01	g : 0.01	
c : 0.19	e : 0.17	d : 0.15	[ : 0.11	f : 0.07	! : 0.07	# : 0.07	b : 0.03	= : 0.01	4 : 0.01	g : 0.01	a : 0.01	
c : 0.21	d : 0.17	e : 0.15	b : 0.09	# : 0.07	a : 0.07	! : 0.05	f : 0.03	[ : 0.03	4 : 0.01	: : 0.01	g : 0.01	
d : 0.21	c : 0.15	e : 0.13	b : 0.13	" : 0.11	[ : 0.09	# : 0.03	! : 0.03	f : 0.01	a : 0.01	g : 0.01	
" : 0.21	a : 0.13	d : 0.11	c : 0.11	[ : 0.09	b : 0.09	! : 0.07	e : 0.05	# : 0.03	f : 0.01	g : 0.01	
[ : 0.27	" : 0.21	d : 0.19	! : 0.09	c : 0.05	# : 0.03	e : 0.03	b : 0.03	f : 0.01	a : 0.01	
d : 0.78	" : 0.09	c : 0.05	e : 0.01	[ : 0.01	! : 0.01	
d : 0.90	c : 0.07	e : 0.01	
d : 0.90	c : 0.07	e : 0.01	
d : 0.80	n : 0.07	c : 0.05	o : 0.03	e : 0.01	
m : 0.60	d : 0.15	n : 0.13	o : 0.05	l : 0.03	
m : 0.60	l : 0.19	n : 0.13	o : 0.05	
m : 0.60	l : 0.19	n : 0.13	o : 0.05	
m : 0.60	l : 0.15	n : 0.13	o : 0.05	d : 0.03	
d : 0.80	o : 0.05	c : 0.05	n : 0.05	e : 0.01	
d : 0.88	c : 0.07	o : 0.01	e : 0.01	
d : 0.90	c : 0.07	e : 0.01	
d : 0.86	3 : 0.03	] : 0.03	4 : 0.01	c : 0.01	e : 0.01	
] : 0.37	3 : 0.17	2 : 0.11	d : 0.09	4 : 0.07	c : 0.03	b : 0.03	: : 0.01	e : 0.01	g : 0.01	a : 0.01	
a : 0.21	3 : 0.19	2 : 0.13	c : 0.13	4 : 0.09	b : 0.07	d : 0.05	e : 0.03	g : 0.03	
c : 0.19	3 : 0.15	] : 0.15	4 : 0.13	d : 0.09	b : 0.07	2 : 0.05	e : 0.05	g : 0.03	f : 0.01	
d : 0.21	c : 0.21	e : 0.13	4 : 0.11	b : 0.07	f : 0.05	] : 0.05	g : 0.03	2 : 0.03	= : 0.01	3 : 0.01	
d : 0.23	e : 0.15	c : 0.13	b : 0.09	f : 0.07	] : 0.07	4 : 0.05	g : 0.03	2 : 0.03	a : 0.03	3 : 0.01	= : 0.01	
d : 0.21	e : 0.17	c : 0.11	b : 0.09	2 : 0.09	f : 0.07	] : 0.07	g : 0.03	4 : 0.03	3 : 0.01	= : 0.01	a : 0.01	

#score	610.5250617607653
#seq	51
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_transcript_m2_run1.txt

#BEAR
fffff[bbtttttttttttbb]ffffff]	chr6:119500512-119500759(-)$1	247	53	82	21.0313
eeeee[bbwwwwwwwwwwwwwwbb]eeee	chr10:424588-424851(-)$1	263	86	115	21.5998
e"""cccbbtttttttttttbb]ccc333	chr4:719078-719363(+)$1	285	184	213	22.4972
#bb[ddddtttttttttttdddd]bbfff	chr14:69847080-69847336(-)$1	256	209	238	20.4909
ggg[dddduuuuuuuuuuuudddd]gggg	chr17:76168566-76168832(+)$1	266	210	239	24.0918
=gggggggyyyyyyyyyyyyyyyyggggg	chr19:42752313-42752542(-)$1	229	118	147	23.2874
!!ffffffuuuuuuuuuuuuffffff22c	chr9:127998636-127998910(-)$1	274	85	114	23.2095
"""eeeeewwwwwwwwwwwwwweeeee>>	chr4:88904091-88904345(+)$1	254	134	163	22.4089
=========ttttttttttt=========	chr6:64291104-64291328(+)$1	224	122	151	22.8631
$eeeee[attttttttttta]eeeee444	chr7:139257475-139257745(-)$1	270	125	154	22.0239
=====^^^^^^^^^^^^^^^^^^^^^^==	chr16:3104259-3104499(-)$1	240	164	193	16.1770
eeeee[bbtttttttttttbbeeeee]ee	chr6:41757421-41757701(+)$1	280	100	129	21.2641
===[cccvvvvvvvvvvvvvccc]=====	chr2:97525563-97525831(-)$1	268	211	240	24.2777
d"""cccauuuuuuuuuuuua]ccc22dd	chr20:43955681-43955941(-)$1	260	12	41	24.0505
gggggggxxxxxxxxxxxxxxxggggggg	chr22:29196303-29196563(-)$1	260	84	113	19.7226
ggg[cccvvvvvvvvvvvvvccc]ggggg	chr22:29192964-29193226(-)$1	262	181	210	23.8040
a[ffffffuuuuuuuuuuuuffffffa]d	chr6:131201000-131201256(-)$1	256	149	178	23.0179
c"""eeeeettttttttttteeeee333c	chr2:10923910-10924136(-)$1	226	67	96	21.9986
eeeeexxxxxxxxxxxxxxxeeeeegggg	chr17:70117262-70117492(+)$1	230	50	79	17.8912
dddd[ccctttttttttttccc22dddd4	chr16:50613106-50613371(+)$1	265	188	217	21.3211
ccc[dddduuuuuuuuuuuudddd]ccc]	chr11:2150274-2150523(-)$1	249	139	168	23.7631
hhccc[bbtttttttttttbbccc]hhhh	chr2:10476244-10476540(+)$1	296	30	59	21.2213
========wwwwwwwwwwwwww=======	chr16:3103984-3104270(-)$1	286	144	173	24.1795
========yyyyyyyyyyyyyyyy=====	chr13:113977480-113977714(+)$1	234	8	37	23.9476
iiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr17:21218101-21218388(+)$1	287	255	284	24.7071
f[bb[cccxxxxxxxxxxxxxxxccc]bb	chr12:133139877-133140121(+)$1	244	133	162	18.6537
hhhhhhhhvvvvvvvvvvvvvhhhhhhhh	chr18:76906317-76906567(+)$1	250	14	43	20.2207
hhhhhhhhvvvvvvvvvvvvvhhhhhhhh	chr2:188331340-188331591(-)$1	251	101	130	20.2207
ffffddddtttttttttttdddd22ffff	chr13:113760401-113760657(+)$1	256	97	126	20.5219
iiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr12:106632168-106632459(-)$1	291	57	86	24.7071
d[ccc[bbtttttttttttbb]cccdddd	chr2:217363936-217364174(+)$1	238	169	198	21.4889
$$$$cccvvvvvvvvvvvvvccc666666	chr5:139646399-139646645(-)$1	246	56	85	20.0422
hhhhhhhhyyyyyyyyyyyyyyyyhhhhh	chr20:36033553-36033820(+)$1	267	70	99	20.8032
=====[bbuuuuuuuuuuuubb22=====	chr20:62238223-62238488(-)$1	265	82	111	24.5845
ggg[ddddtttttttttttdddd]ggggg	chr2:216225932-216226181(-)$1	249	200	229	22.2987
iiiiiiiiitttttttttttiiiiiiiii	chr7:103112606-103112850(-)$1	244	187	216	22.2522
!ccc[cccxxxxxxxxxxxxxxxccc]cc	chr2:97525796-97526027(-)$1	231	59	88	19.7411
"""ddddwwwwwwwwwwwwwwdddd4444	chr14:101201256-101201478(+)$1	222	11	40	22.9334
"""ddddwwwwwwwwwwwwwwdddd4444	chr14:101201170-101201425(+)$1	255	97	126	22.9334
iiiiiiiixxxxxxxxxxxxxxxiiiiii	chr14:70238524-70238769(+)$1	245	135	164	20.1030
ddddbbwwwwwwwwwwwwwwbb]dddd::	chr16:50613773-50614007(+)$1	234	160	189	18.9046
!ggggggguuuuuuuuuuuugggggggee	chr19:1257840-1258109(+)$1	269	72	101	24.0574
ffffff[auuuuuuuuuuuua]ffffff3	chr10:74035504-74035776(+)$1	272	188	217	23.2917
ccc[ddddxxxxxxxxxxxxxxxddddcc	chr2:240287142-240287390(-)$1	248	187	216	18.7653
ddddbbwwwwwwwwwwwwwwbb]dddd::	chr16:50613887-50614149(+)$1	262	46	75	18.9046
hh[a[cccyyyyyyyyyyyyyyyycccah	chr14:32546301-32546554(+)$1	253	40	69	22.6400
ee!!ddddtttttttttttdddd22eeee	chr7:45932720-45932952(+)$1	232	202	231	21.0544
e[ffffffuuuuuuuuuuuuffffff22e	chr1:150237740-150237993(-)$1	253	159	188	22.8748
CCffffffuuuuuuuuuuuufffffffff	chr1:16451397-16451709(-)$1	312	82	111	20.0648
eeeddddbbtttttttttttbb]dddd>>	chr19:18499655-18499942(+)$1	287	192	221	20.5346
!!cccxxxxxxxxxxxxxxxccc333===	chr16:3104146-3104421(-)$1	275	195	224	19.4397
ggg[eeeeettttttttttteeeee>>>>	chr5:42800025-42800279(-)$1	254	63	92	21.1954
c[ffffffuuuuuuuuuuuuffffff]cc	chr19:18499791-18500045(+)$1	254	148	177	23.3108
=====^^^^^^^^^^^^^^^^^^^^====	chr6:64290946-64291200(+)$1	254	106	135	16.7594
[ddddcccuuuuuuuuuuuuccc]dddd]	chrX:153664436-153664714(+)$1	278	53	82	23.6855
$$$$cccvvvvvvvvvvvvvccc666666	chr5:133291223-133291537(-)$1	314	235	264	20.0422

#otherMatches

#Seq PSSM
UGUUAAACUGAAUAGAAUUGUAUAGCGAU	chr6:119500512-119500759(-)$1	247	53	82	21.0313
caugucuguucauuugugucuuuaugcau	chr10:424588-424851(-)$1	263	86	115	21.5998
CGUGUCCACGUGAGGAGGGAGUAGGAACG	chr4:719078-719363(+)$1	285	184	213	22.4972
UAUUAGAUGAAAUGUGAGGAUCUUGUUCA	chr14:69847080-69847336(-)$1	256	209	238	20.4909
GACGGAAUAAAUGUUUUCUCAUUCAGUCU	chr17:76168566-76168832(+)$1	266	210	239	24.0918
UAGGGGCUAUUCCCUGUCUCUGUGGGUUU	chr19:42752313-42752542(-)$1	229	118	147	23.2874
AACUUUUGUUAGGAAAAAAUUGAAAGAAC	chr9:127998636-127998910(-)$1	274	85	114	23.2095
ACUCCCUGUAAACUAAAAGCUUCAGGGUU	chr4:88904091-88904345(+)$1	254	134	163	22.4089
CAUAUAUUUAUACUGUCUGGGGAUGUGUG	chr6:64291104-64291328(+)$1	224	122	151	22.8631
agggagagaaggagggaggCGCUCCUGGG	chr7:139257475-139257745(-)$1	270	125	154	22.0239
UGCAUCUGUCCAUCCAUCCCCGCCUCUGU	chr16:3104259-3104499(-)$1	240	164	193	16.1770
AAGUUCUGUACAUAGUUCCCAAGCUUCUG	chr6:41757421-41757701(+)$1	280	100	129	21.2641
GUGGGCCUGCUGUGGACAAUGGCAUACUC	chr2:97525563-97525831(-)$1	268	211	240	24.2777
CCCCCACCAAUGAGUUCUACGCGUGAAGC	chr20:43955681-43955941(-)$1	260	12	41	24.0505
GACGGGACCCCUAAAGUUCUGCUUCUGUC	chr22:29196303-29196563(-)$1	260	84	113	19.7226
UGGUGCCUCAUGUGAGUACUGGUUCCAAG	chr22:29192964-29193226(-)$1	262	181	210	23.8040
GCAGGACUGUAUCUACUAGAAGUUCUCAA	chr6:131201000-131201256(-)$1	256	149	178	23.0179
GUAUGGGUUUUUUUUAAUGUGAUCCCUUC	chr2:10923910-10924136(-)$1	226	67	96	21.9986
UCCAAUUCGCCUCCCCCCACUUGGAGCGG	chr17:70117262-70117492(+)$1	230	50	79	17.8912
CUAACCAGCCACACAUGCACUGUCUUAGU	chr16:50613106-50613371(+)$1	265	188	217	21.3211
UAACGCUUGCAAUCCCAAUAAAGCAUUAA	chr11:2150274-2150523(-)$1	249	139	168	23.7631
UUGCAUGUUCGUAUCCUCUGCUGUAAAUU	chr2:10476244-10476540(+)$1	296	30	59	21.2213
GCAUGCAUCCAUACCUGCCUCUGUGCAUG	chr16:3103984-3104270(-)$1	286	144	173	24.1795
CCUUGGGCGUCUCUAAUGUCUGCAGCUCA	chr13:113977480-113977714(+)$1	234	8	37	23.9476
AGGGGGAGCCUUCCAGCUCACUCUCCCUG	chr17:21218101-21218388(+)$1	287	255	284	24.7071
ACACCUGGCCCCCACAGCCUGCACCAUGU	chr12:133139877-133140121(+)$1	244	133	162	18.6537
GGUGUGCAGAGUGACUGAAGGUGCACGCU	chr18:76906317-76906567(+)$1	250	14	43	20.2207
UAAAUUGCUUAUUCUAGGUCUGUAAUUUA	chr2:188331340-188331591(-)$1	251	101	130	20.2207
GGUCGGACAAGCGCAGGGAGUCUGGGGCC	chr13:113760401-113760657(+)$1	256	97	126	20.5219
AAGGAAAAUUAAUUUUACUUUUUUUUUUG	chr12:106632168-106632459(-)$1	291	57	86	24.7071
CUCUUUCUGUGGCAAAGUAAGUAAGGCAA	chr2:217363936-217364174(+)$1	238	169	198	21.4889
UUCCAGUACACCUGCAUUUAACUUUAACC	chr5:139646399-139646645(-)$1	246	56	85	20.0422
AAUACUGUCCUUUUUUUUUUUUUAACAGU	chr20:36033553-36033820(+)$1	267	70	99	20.8032
UUUCUAGAAAUGGAGGUGGGUCAGAGGGG	chr20:62238223-62238488(-)$1	265	82	111	24.5845
CAUAUGCAGCCAACCAAGAUGCAAAUGUU	chr2:216225932-216226181(-)$1	249	200	229	22.2987
UUAAUAUACUCCUUAAAAAUGUAUGUUGG	chr7:103112606-103112850(-)$1	244	187	216	22.2522
CUGGGUCCUCCUGGUGAGUCAUUGGAGCU	chr2:97525796-97526027(-)$1	231	59	88	19.7411
GUUCCGCAGAGCUUACUAUACGCGGUCUG	chr14:101201256-101201478(+)$1	222	11	40	22.9334
GUUCCGCAGAGCUUACUAUACGCGGUCUG	chr14:101201170-101201425(+)$1	255	97	126	22.9334
CAGCUGCUGGACAGACACAUUAGAGCAGC	chr14:70238524-70238769(+)$1	245	135	164	20.1030
ACAGGCUACCAGCUACACACGCACUGUCU	chr16:50613773-50614007(+)$1	234	160	189	18.9046
UUUUCCUUCAUUUCUUUAACAAGGAGAGC	chr19:1257840-1258109(+)$1	269	72	101	24.0574
CAUGAAGAUAAGAUACUCACUGUUCAUGA	chr10:74035504-74035776(+)$1	272	188	217	23.2917
GGUAUCUGAUCUUCCGAACGUUCCAGAAU	chr2:240287142-240287390(-)$1	248	187	216	18.7653
ACAGGCUACCAGCUACACACGCACUGUCU	chr16:50613887-50614149(+)$1	262	46	75	18.9046
gggcgcUGGGGAAGGGGGGAGGGACGGGC	chr14:32546301-32546554(+)$1	253	40	69	22.6400
UAUCAUGAAACACUUCUCAUCAUAUUGUA	chr7:45932720-45932952(+)$1	232	202	231	21.0544
GUGAUUUUGACUAAUAAAAAAGAAUUUGU	chr1:150237740-150237993(-)$1	253	159	188	22.8748
UGGGGACUUUAUUUAUUUCUAGUUCUUUC	chr1:16451397-16451709(-)$1	312	82	111	20.0648
CAAACAGCUGUAUUUAUAUAAGUCUGUUA	chr19:18499655-18499942(+)$1	287	192	221	20.5346
cuguccauucauccaucccugacucugug	chr16:3104146-3104421(-)$1	275	195	224	19.4397
AUCAUACUCUUCUAAAACUUGAGUGGCUG	chr5:42800025-42800279(-)$1	254	63	92	21.1954
UAUUUAUUUAAAACUCUGGUGAUAAAAAU	chr19:18499791-18500045(+)$1	254	148	177	23.3108
UUUUUCCUUCCCAACCUCUCUUGCAAAAA	chr6:64290946-64291200(+)$1	254	106	135	16.7594
UAAGGGACAUGAAUUCUAGGGUCUCCUUU	chrX:153664436-153664714(+)$1	278	53	82	23.6855
ACCCCUGAACCGUUUUAUUGCAGUAAUUU	chr5:133291223-133291537(-)$1	314	235	264	20.0422

#DB
(((((.((...........)).)))))).	chr6:119500512-119500759(-)$1	1	53	82	21.0313
(((((.((..............)).))))	chr10:424588-424851(-)$1	1	86	115	21.5998
(...(((((...........)).)))...	chr4:719078-719363(+)$1	1	184	213	22.4972
.((.((((...........)))).)))))	chr14:69847080-69847336(-)$1	1	209	238	20.4909
(((.((((............)))).))))	chr17:76168566-76168832(+)$1	1	210	239	24.0918
((((((((................)))))	chr19:42752313-42752542(-)$1	1	118	147	23.2874
..((((((............))))))..)	chr9:127998636-127998910(-)$1	1	85	114	23.2095
...(((((..............)))))..	chr4:88904091-88904345(+)$1	1	134	163	22.4089
(((((((((...........)))))))))	chr6:64291104-64291328(+)$1	1	122	151	22.8631
.(((((.(...........).)))))...	chr7:139257475-139257745(-)$1	1	125	154	22.0239
(((((......................))	chr16:3104259-3104499(-)$1	1	164	193	16.1770
(((((.((...........))))))).))	chr6:41757421-41757701(+)$1	1	100	129	21.2641
(((.(((.............))).)))))	chr2:97525563-97525831(-)$1	1	211	240	24.2777
(...((((............).)))..))	chr20:43955681-43955941(-)$1	1	12	41	24.0505
(((((((...............)))))))	chr22:29196303-29196563(-)$1	1	84	113	19.7226
(((.(((.............))).)))))	chr22:29192964-29193226(-)$1	1	181	210	23.8040
(.((((((............))))))).)	chr6:131201000-131201256(-)$1	1	149	178	23.0179
(...(((((...........)))))...)	chr2:10923910-10924136(-)$1	1	67	96	21.9986
(((((...............)))))((((	chr17:70117262-70117492(+)$1	1	50	79	17.8912
((((.(((...........)))..)))).	chr16:50613106-50613371(+)$1	1	188	217	21.3211
(((.((((............)))).))).	chr11:2150274-2150523(-)$1	1	139	168	23.7631
(((((.((...........))))).))))	chr2:10476244-10476540(+)$1	1	30	59	21.2213
((((((((..............)))))))	chr16:3103984-3104270(-)$1	1	144	173	24.1795
((((((((................)))))	chr13:113977480-113977714(+)$1	1	8	37	23.9476
((((((((............)))))))))	chr17:21218101-21218388(+)$1	1	255	284	24.7071
(.((.(((...............))).))	chr12:133139877-133140121(+)$1	1	133	162	18.6537
((((((((.............))))))))	chr18:76906317-76906567(+)$1	1	14	43	20.2207
((((((((.............))))))))	chr2:188331340-188331591(-)$1	1	101	130	20.2207
((((((((...........))))..))))	chr13:113760401-113760657(+)$1	1	97	126	20.5219
((((((((............)))))))))	chr12:106632168-106632459(-)$1	1	57	86	24.7071
(.(((.((...........)).)))))))	chr2:217363936-217364174(+)$1	1	169	198	21.4889
....(((.............)))......	chr5:139646399-139646645(-)$1	1	56	85	20.0422
((((((((................)))))	chr20:36033553-36033820(+)$1	1	70	99	20.8032
(((((.((............))..)))))	chr20:62238223-62238488(-)$1	1	82	111	24.5845
(((.((((...........)))).)))))	chr2:216225932-216226181(-)$1	1	200	229	22.2987
(((((((((...........)))))))))	chr7:103112606-103112850(-)$1	1	187	216	22.2522
.(((.(((...............))).))	chr2:97525796-97526027(-)$1	1	59	88	19.7411
...((((..............))))....	chr14:101201256-101201478(+)$1	1	11	40	22.9334
...((((..............))))....	chr14:101201170-101201425(+)$1	1	97	126	22.9334
((((((((...............))))))	chr14:70238524-70238769(+)$1	1	135	164	20.1030
((((((..............)).))))..	chr16:50613773-50614007(+)$1	1	160	189	18.9046
.(((((((............)))))))))	chr19:1257840-1258109(+)$1	1	72	101	24.0574
((((((.(............).)))))).	chr10:74035504-74035776(+)$1	1	188	217	23.2917
(((.((((...............))))))	chr2:240287142-240287390(-)$1	1	187	216	18.7653
((((((..............)).))))..	chr16:50613887-50614149(+)$1	1	46	75	18.9046
((.(.(((................)))))	chr14:32546301-32546554(+)$1	1	40	69	22.6400
((..((((...........))))..))))	chr7:45932720-45932952(+)$1	1	202	231	21.0544
(.((((((............))))))..)	chr1:150237740-150237993(-)$1	1	159	188	22.8748
((((((((............))))))(((	chr1:16451397-16451709(-)$1	1	82	111	20.0648
(((((((((...........)).))))..	chr19:18499655-18499942(+)$1	1	192	221	20.5346
..(((...............)))...)))	chr16:3104146-3104421(-)$1	1	195	224	19.4397
(((.(((((...........)))))....	chr5:42800025-42800279(-)$1	1	63	92	21.1954
(.((((((............)))))).))	chr19:18499791-18500045(+)$1	1	148	177	23.3108
(((((....................))))	chr6:64290946-64291200(+)$1	1	106	135	16.7594
.(((((((............))).)))).	chrX:153664436-153664714(+)$1	1	53	82	23.6855
....(((.............)))......	chr5:133291223-133291537(-)$1	1	235	264	20.0422

#PSSM
= : 0.14	e : 0.12	g : 0.08	d : 0.08	h : 0.08	f : 0.07	! : 0.07	c : 0.07	i : 0.07	" : 0.05	$ : 0.05	# : 0.01	a : 0.01	C : 0.01	[ : 0.01	
g : 0.12	= : 0.12	e : 0.10	" : 0.10	[ : 0.08	h : 0.08	d : 0.07	i : 0.07	f : 0.05	c : 0.05	! : 0.03	$ : 0.03	b : 0.01	C : 0.01	
f : 0.14	g : 0.12	= : 0.12	" : 0.10	c : 0.10	e : 0.08	d : 0.07	i : 0.07	h : 0.05	b : 0.03	$ : 0.03	[ : 0.01	! : 0.01	
f : 0.14	[ : 0.14	d : 0.12	= : 0.10	e : 0.08	c : 0.07	i : 0.07	" : 0.05	g : 0.05	h : 0.05	$ : 0.03	b : 0.01	a : 0.01	! : 0.01	
d : 0.19	c : 0.16	f : 0.12	e : 0.12	= : 0.10	[ : 0.07	i : 0.07	g : 0.05	h : 0.05	b : 0.03	
c : 0.19	d : 0.17	[ : 0.10	f : 0.10	e : 0.07	i : 0.07	g : 0.05	= : 0.05	h : 0.05	^ : 0.03	x : 0.03	b : 0.03	
c : 0.19	d : 0.17	b : 0.10	f : 0.08	i : 0.07	g : 0.05	e : 0.05	= : 0.05	h : 0.05	[ : 0.03	^ : 0.03	x : 0.03	w : 0.03	
b : 0.14	d : 0.12	f : 0.08	c : 0.08	v : 0.07	i : 0.07	w : 0.07	e : 0.05	= : 0.05	a : 0.05	x : 0.05	h : 0.05	g : 0.03	^ : 0.03	
u : 0.24	t : 0.17	w : 0.12	x : 0.12	v : 0.10	y : 0.07	b : 0.03	^ : 0.03	e : 0.03	= : 0.01	i : 0.01	
t : 0.28	u : 0.24	w : 0.12	x : 0.12	v : 0.10	y : 0.07	^ : 0.03	
t : 0.28	u : 0.24	w : 0.12	x : 0.12	v : 0.10	y : 0.07	^ : 0.03	
t : 0.28	u : 0.24	w : 0.12	x : 0.12	v : 0.10	y : 0.07	^ : 0.03	
t : 0.28	u : 0.24	w : 0.12	x : 0.12	v : 0.10	y : 0.07	^ : 0.03	
t : 0.28	u : 0.24	w : 0.12	x : 0.12	v : 0.10	y : 0.07	^ : 0.03	
t : 0.28	u : 0.24	w : 0.12	x : 0.12	v : 0.10	y : 0.07	^ : 0.03	
t : 0.28	u : 0.24	w : 0.12	x : 0.12	v : 0.10	y : 0.07	^ : 0.03	
t : 0.28	u : 0.24	w : 0.12	x : 0.12	v : 0.10	y : 0.07	^ : 0.03	
t : 0.28	u : 0.24	w : 0.12	x : 0.12	v : 0.10	y : 0.07	^ : 0.03	
t : 0.28	u : 0.24	w : 0.12	x : 0.12	v : 0.10	y : 0.07	^ : 0.03	
u : 0.24	w : 0.12	x : 0.12	t : 0.10	v : 0.10	b : 0.07	d : 0.07	y : 0.07	^ : 0.03	a : 0.01	c : 0.01	
b : 0.16	c : 0.12	d : 0.10	w : 0.08	f : 0.08	x : 0.08	y : 0.07	e : 0.05	i : 0.05	^ : 0.03	a : 0.03	v : 0.03	= : 0.01	] : 0.01	g : 0.01	
d : 0.14	c : 0.14	b : 0.08	f : 0.08	e : 0.08	x : 0.08	] : 0.07	y : 0.07	w : 0.05	i : 0.05	^ : 0.03	h : 0.03	= : 0.01	g : 0.01	
c : 0.16	d : 0.14	f : 0.12	e : 0.10	] : 0.07	y : 0.07	x : 0.07	i : 0.05	= : 0.03	^ : 0.03	g : 0.03	2 : 0.03	h : 0.03	b : 0.01	
d : 0.14	f : 0.12	c : 0.10	e : 0.10	] : 0.08	y : 0.07	2 : 0.07	i : 0.07	= : 0.03	^ : 0.03	g : 0.03	h : 0.03	6 : 0.03	b : 0.01	3 : 0.01	
d : 0.14	f : 0.12	c : 0.10	e : 0.10	g : 0.08	= : 0.08	] : 0.07	i : 0.07	h : 0.05	^ : 0.03	2 : 0.03	6 : 0.03	b : 0.01	3 : 0.01	
f : 0.14	g : 0.12	d : 0.12	= : 0.10	e : 0.08	c : 0.08	h : 0.07	i : 0.07	3 : 0.03	6 : 0.03	4 : 0.03	b : 0.01	^ : 0.01	2 : 0.01	> : 0.01	
g : 0.12	= : 0.12	d : 0.12	f : 0.08	] : 0.07	h : 0.07	i : 0.07	e : 0.05	2 : 0.05	4 : 0.05	3 : 0.03	c : 0.03	6 : 0.03	^ : 0.01	a : 0.01	> : 0.01	
= : 0.14	g : 0.10	f : 0.08	e : 0.07	d : 0.07	c : 0.07	h : 0.07	i : 0.07	> : 0.05	4 : 0.05	3 : 0.03	2 : 0.03	6 : 0.03	: : 0.03	] : 0.01	b : 0.01	a : 0.01	
= : 0.14	g : 0.10	e : 0.08	c : 0.08	h : 0.08	4 : 0.07	i : 0.07	] : 0.05	f : 0.05	> : 0.05	d : 0.05	3 : 0.03	6 : 0.03	: : 0.03	b : 0.01	

#score	1211.8800010606217
#seq	56
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_transcript_m1_run2.txt

#BEAR
c[==========!!ddddoooooodddd==========22	chr17:39845266-39845508(+)$1	242	73	113	15.9242
c####ggggggg[bb[bbmmmmbb]bb]gggggggccca]	chr7:104703935-104704212(+)$1	277	134	174	13.1682
gg"""eeeee[bb!!cccmmmmccc]bbeeeeeggggggg	chr12:56524648-56524941(+)$1	293	100	140	13.9943
g[ccc"""bb[a[cccooooooccc]a]bb4444ccc]gg	chr1:155885387-155885642(-)$1	255	95	135	14.1295
""iiiiiiiiibb[aooooooa]bb333iiiiiiiii333	chr2:86711285-86711539(+)$1	254	179	219	15.7122
eeeee[ffffff"""cccmmmmcccffffff]eeeee22e	chr18:43669556-43669813(-)$1	257	34	74	12.3319
ee[eeeee[a[bb[ddddmmmmdddd]bb333a]eeeee]	chr11:61098882-61099141(-)$1	259	44	84	12.6924
iiiiiiiiccc[bb[cccmmmmcccbb22ccc]iiiiiii	chr10:102107229-102107501(+)$1	272	68	108	15.1313
:bb[gggggggbb!!cccmmmmccc]bb333ggggggg]b	chr1:44450008-44450343(+)$1	335	240	280	14.2806
!!a"""ccc[cccoooooocccccc333a4444ffffff]	chr10:70940240-70940520(+)$1	280	71	111	11.1979
fff!!ccc!!a"""cccooooooccca]ccc22ffffff]	chr17:42290415-42290661(-)$1	246	66	106	14.6344
[==========[fffffflllffffff22==========3	chrX:47060743-47061023(+)$1	280	47	87	15.1372
d!!eeeee"""ccc[cccmmmmccc333ccc4444eeeee	chr2:173435490-173435753(+)$1	263	148	188	14.7624
==========="""ddddnnnnndddd===========::	chr17:25638581-25638841(+)$1	260	204	244	13.9006
=======eeeee"""ccclllccceeeee22=========	chr18:47811685-47811924(-)$1	239	130	170	15.0416
a[ggggggg####eeeeemmmmeeeee333ggggggg22a	chr19:1105755-1106037(+)$1	282	58	98	14.8265
ggggggdddd!!a[cccnnnnnccc]a]dddd]ggggggg	chr12:117479584-117479843(-)$1	259	200	240	13.9267
eeeeiiiiiiiii[cccnnnnnccc4444iiiiiiiii]e	chr21:44527144-44527449(-)$1	305	150	190	15.4460
===!!a####bb[cccoooooocccbb333a22=======	chr1:45227600-45227883(+)$1	283	142	182	15.6389
c[cccccc[dddd!!cccmmmmccc22dddd]ccc4444c	chr12:120592565-120592872(-)$1	307	88	128	13.7004
c"""ccc"""dddd[cccnnnnnccc]dddd]ccc333cc	chr19:9938833-9939090(+)$1	257	191	231	12.8998
[dddd[ccc[bb[bbcccmmmmccc]bb333bbccc]ddd	chr1:201837841-201838107(+)$1	266	101	141	12.1436
ggggggg####bb[ddddmmmmdddd]bb22ggggggg]b	chr21:46912332-46912603(+)$1	271	205	245	14.2665
gggggg####ccc[bb[allla]bb333ccc333gggggg	chr19:36122036-36122346(+)$1	310	134	174	15.8580
fffffeeeee!!a[ddddmmmmdddd]a22eeeee]ffff	chr1:228334917-228335198(+)$1	281	210	250	11.6777
ffff####dddd"""cccmmmmccc]dddd333ffffff3	chr2:153549475-153549697(-)$1	222	120	160	13.8346
!!ggggggg"""ffffffmmmmffffff333gggggggcc	chr5:68470191-68470432(+)$1	241	23	63	14.8424
ggggggccc[ccc[bbnnnnnbbccc22ccc]ggggggg:	chr1:46733161-46733463(+)$1	302	63	103	11.7225
"ffffff[bb[bb"""ccclllccc333bbbbffffff33	chr19:59068126-59068411(-)$1	285	180	220	12.6364
dddcccggggggg[cccnnnnncccggggggg333ccc22	chr19:59063217-59063496(-)$1	279	168	208	13.6850
======eeeee$$$$$bbmmmmbb4444eeeee22=====	chr17:7579488-7579752(-)$1	264	21	61	13.4912
=========="""eeeeemmmmeeeee>>>>>>>>>>>>=	chr12:57892335-57892589(+)$1	254	160	200	12.0254
bbccc[a"""ccc[a[bbmmmmbb]accc333a]ccc]bb	chr6:44191330-44191654(+)$1	324	152	192	13.6691
ggggggg"""ccc[eeeeellleeeee]ccc]ggggggg]	chr17:49054333-49054588(-)$1	255	73	113	14.2371
gggggggffffff[bbccclllccc]bb]ffffff]gggg	chr16:71956668-71956918(+)$1	250	87	127	12.5693
ffffff"""iiiiiiiiillliiiiiiiiiffffffccc[	chr11:67048257-67048521(+)$1	264	45	85	12.6275
iiiiiiii!!bbeeeeennnnneeeee]bb22iiiiiiii	chr11:118630426-118630754(-)$1	328	252	292	12.8129
[eeeee[ggggggg!!bbnnnnnbb22ggggggg4444ee	chr15:101826896-101827199(-)$1	303	153	193	12.0850
"dddd!!===========oooooo===========22ddd	chr8:38099772-38100086(+)$1	314	58	98	13.9443
!!iiiiiiiii$$$$$bbnnnnnbb333iiiiiiiii22e	chr12:21661386-21661647(+)$1	261	9	49	14.6092
============!!cccnnnnnccc===============	chr17:7529806-7530075(-)$1	269	73	113	17.4544
ggggg[aa!!dddd[cccooooooccc]dddd22a]a]gg	chr10:1094572-1094874(-)$1	302	164	204	13.2414
eeeeeccceeeee[acccmmmmccc]a]eeeee333ccc:	chr6:160148827-160149074(+)$1	247	20	60	12.5554
ccc[ggggggg[ffffffmmmmffffffggggggg]ccce	chr11:118959935-118960208(+)$1	273	163	203	13.2831
c[ffffff[iiiiiiiiimmmmiiiiiiiii]ffffff]c	chr1:153949368-153949639(-)$1	271	36	76	13.8921
""ggggggg!!eeeee[aooooooaeeeeeggggggg666	chr17:57742211-57742484(+)$1	273	15	55	12.2570
===============cccmmmmccc333============	chr5:154169867-154170181(+)$1	314	243	283	18.9614
[iiiiiiiii"""ccc[bbmmmmbb333ccciiiiiiiii	chr19:3982620-3982875(-)$1	255	195	235	15.2631
ggggg[bb[dddd[ddddmmmmdddd]dddd]bbgggggg	chr3:195781772-195781997(-)$1	225	139	179	12.3863
========%%%%%%ddddoooooodddd===========]	chr1:161136998-161137307(+)$1	309	91	131	12.3654
cc!!cccggggggg!!bbmmmmbb333ggggggg]ccc22	chr5:149826855-149827186(-)$1	331	287	327	14.5165
==========ffffff[aooooooa]ffffff22======	chr12:57913513-57913758(-)$1	245	141	181	14.3926
effffff!!a[gggggggooooooggggggg]a22fffff	chr22:19706252-19706555(+)$1	303	127	167	12.6949
ggggggccc"""fffffflllffffff333ccc]gggggg	chr19:56171945-56172230(+)$1	285	45	85	13.7982
==========[bb[bboooooobb]bb22===========	chr6:134274560-134274899(+)$1	339	200	240	15.5567
dd[cccbb[bb[a[ddddmmmmdddd]a]bb]bb333ccc	chr7:73111770-73112032(+)$1	262	61	101	11.8363
cc[ggggggg[ccc"""ammmma333cccgggggggccc]	chr20:3199243-3199510(+)$1	267	202	242	15.2789
"""dddd!!a[gggggggmmmmggggggg]a22dddd333	chr2:101905249-101905500(-)$1	251	115	155	13.1072
cc[bb!!ggggggg!!bbmmmmbb22ggggggg22bb333	chr1:76256987-76257229(+)$1	242	58	98	13.1054
gggg"""ccc[gggggggmmmmggggggg]ccc22ggggg	chr20:34214310-34214575(-)$1	265	18	58	14.2147
iiiii"""ccc"""ddddmmmmddddccciiiiiiiii]e	chr1:1192378-1192658(-)$1	280	208	248	15.3930
:bb[ccc"""ccc[cccnnnnnccc]ccc333ccc]bbee	chr9:96435317-96435611(+)$1	294	135	175	12.6825

#otherMatches

#Seq PSSM
CGCGGGCCCGGGUGGGGCAGCGGGGCCUUCCGGGCCCGGA	chr17:39845266-39845508(+)$1	242	73	113	15.9242
AUAACCUUUGGUAAUGUUGGAAAAGAUAACUAAAGUCACU	chr7:104703935-104704212(+)$1	277	134	174	13.1682
AGGGUGAGUGGCCCGGAGUAGACUCAGGUACUUCUCCCUA	chr12:56524648-56524941(+)$1	293	100	140	13.9943
ggugggcagaucaccuaaggucaggaguucaagaccagcu	chr1:155885387-155885642(-)$1	255	95	135	14.1295
CCUGUUCUGUUGGUCUUUGUUGUCCCUGGACAGAACAUCA	chr2:86711285-86711539(+)$1	254	179	219	15.7122
AUGUUCGUUAGAUAUAGUUGCAGCUUCUAACAAACAUCAA	chr18:43669556-43669813(-)$1	257	34	74	12.3319
UGGUCACCGCCGAGGGGCUUCGGCCCGUCAAAGAGGUGGG	chr11:61098882-61099141(-)$1	259	44	84	12.6924
CCAGCCUGGCCCCGUACCGCCGGGUCGCAGGCGCGGGCUG	chr10:102107229-102107501(+)$1	272	68	108	15.1313
aaggccuggaggcaaggaagagucuggcauauuccggggc	chr1:44450008-44450343(+)$1	335	240	280	14.2806
GACAAGAGUGAGUGCGGGAACUACUGAGGGCGGCAGAGGG	chr10:70940240-70940520(+)$1	280	71	111	11.1979
CCCGAUUCAGGUAAGGCAGUGGAGCCCAGAGGAGGGCCAC	chr17:42290415-42290661(-)$1	246	66	106	14.6344
UGGCAGGCAGGUGGGCUGCAGUAGUCCUUCCUGUCUGCUC	chrX:47060743-47061023(+)$1	280	47	87	15.1372
AAAAGACAUAAUCUACUCUCAGGGGAAAAGAAUCUUGUCU	chr2:173435490-173435753(+)$1	263	148	188	14.7624
uagcugggacuacaggugcacaccaccaguccuggcuaau	chr17:25638581-25638841(+)$1	260	204	244	13.9006
GGUGGGUAGGGCUAGGGCAAGGCCGCCCUCCAUCCACCUG	chr18:47811685-47811924(-)$1	239	130	170	15.0416
UGACCUCUGGGGACAGUACGGCUGCUGGGGUGGGGGUGGG	chr19:1105755-1106037(+)$1	282	58	98	14.8265
CUGGGUGACCAACAUCUCAGUAGGAAGGGGUCAACCUGGG	chr12:117479584-117479843(-)$1	259	200	240	13.9267
UUGGGGUCCGGACUGGCUGAUCGCCCGACGUCCGGGCCUC	chr21:44527144-44527449(-)$1	305	150	190	15.4460
AGGGCCUACUGUAUACUCCUCUGUGACUCUGAACCUGAGG	chr1:45227600-45227883(+)$1	283	142	182	15.6389
UGGGAAGCCAGGUAUAACAAUUGUUCAGCCUCGUUCUACU	chr12:120592565-120592872(-)$1	307	88	128	13.7004
UGUUUGCAACGACCGUCUGGGGAAGAAGGUCCGCGUUAAA	chr19:9938833-9939090(+)$1	257	191	231	12.8998
gugugugugugugugAGAGAGAUCUACAAGUGCCACCCAC	chr1:201837841-201838107(+)$1	266	101	141	12.1436
UGGGGUCCGGGCAGGCGCGAGGGUGCGUGAUGACCCCAGC	chr21:46912332-46912603(+)$1	271	205	245	14.2665
GGUGGUAAAAAGGUGUGCACAGGACUCUCCUCCCACCAUC	chr19:36122036-36122346(+)$1	310	134	174	15.8580
GCAGGCCAUGAACCGCAUCUGUGUGCUGGACGUGGACCUG	chr1:228334917-228335198(+)$1	281	210	250	11.6777
AGUAAAUAGUAUGGAUGUAGCAGCAGGUACGUAUACUCUG	chr2:153549475-153549697(-)$1	222	120	160	13.8346
CAUUAUUGAUCGGUUCAUGCAGGUGAGCAUUUCAGUAAGA	chr5:68470191-68470432(+)$1	241	23	63	14.8424
AGAAUGAUCUGCUUGAGUAUUUCAGCUUGGUACAUUUUGU	chr1:46733161-46733463(+)$1	302	63	103	11.7225
CCCUGGACAGAGGAGGCAGCAGCUGAGGCCCUUCCAGGCA	chr19:59068126-59068411(-)$1	285	180	220	12.6364
UGUGGUGUCCCAGGUUCUGGAUGAGCUGGGACUUAGCCUA	chr19:59063217-59063496(-)$1	279	168	208	13.6850
UGUCUUUCAGACUUCCUGAAAACAACGUUCUGGUAAGGAC	chr17:7579488-7579752(-)$1	264	21	61	13.4912
GCUGUCUGGGCACUCCUAAACUUAGGAUCUCAAUAUCACC	chr12:57892335-57892589(+)$1	254	160	200	12.0254
GCCCGGAGAAGGGACGCCGGGUGGGGCCCCAGUGCGGAGC	chr6:44191330-44191654(+)$1	324	152	192	13.6691
GGUGGGGACAGGAAAUGGUGUCAUUAUCUCCAUCCCAUUG	chr17:49054333-49054588(-)$1	255	73	113	14.2371
UUCUAGUUCAGCUGUAGGAAAAUCUAUAGAGUUGGUGCUA	chr16:71956668-71956918(+)$1	250	87	127	12.5693
UCUCCCGGGAGCUGGGCCUGUGGCUUGGCUGGGAGGGGGA	chr11:67048257-67048521(+)$1	264	45	85	12.6275
CAGUUGAUCAAUUAAAGAUUUGUUUUACGUAAAUUAACUG	chr11:118630426-118630754(-)$1	328	252	292	12.8129
UGAUUAUUAAAAUUGUCUAAAUGAGUAAAUUUUACCAUUA	chr15:101826896-101827199(-)$1	303	153	193	12.0850
AUCAGCAGAUUGGGAGGGUAGAAUUUCUUCCAGUCAACUG	chr8:38099772-38100086(+)$1	314	58	98	13.9443
AAGCUACAGGUUUUUUUCUGGGUGGUGUAUUUGUAGUCCU	chr12:21661386-21661647(+)$1	261	9	49	14.6092
UUGAAAGAGGGAGUGAGAAAACCUUUUUCUUUUUUGACCC	chr17:7529806-7530075(-)$1	269	73	113	17.4544
CACCCGUGAGGUCUCGGCGCGGAGGCCUGGACAGCUGGGG	chr10:1094572-1094874(-)$1	302	164	204	13.2414
GGCCUGGUGCGGCACCGGUCUCUCGUGAGCCGCUCUACCU	chr6:160148827-160149074(+)$1	247	20	60	12.5554
GAGGCUGAAGGCAGCUCAUAGGUGGGUUUUUUCAGGCUUC	chr11:118959935-118960208(+)$1	273	163	203	13.2831
ACAGGAUCGUUCCCGGCCUCGGGGCUGGGGGAGAUCUUAU	chr1:153949368-153949639(-)$1	271	36	76	13.8921
AAAUGUUAGUUCAAGAUGAAGAGCCUCUUGCUGACAUCAC	chr17:57742211-57742484(+)$1	273	15	55	12.2570
UUUGGCCUCUGAUCUCUUGGUGAAGCUUGGGUCGGGGGCU	chr5:154169867-154170181(+)$1	314	243	283	18.9614
AGGGGGCUGGAAUGUUUUCAUCCGACUUGACCCAGCCCUU	chr19:3982620-3982875(-)$1	255	195	235	15.2631
UUGUAGCCAUAGUACAUUUUAAAGUGAACUGAGGUAUAAU	chr3:195781772-195781997(-)$1	225	139	179	12.3863
GGGGAGGAAGUAUGUUUGGUGGGUCAGAUCUUCCCUUAGU	chr1:161136998-161137307(+)$1	309	91	131	12.3654
AGUUCCCUUUGCAGGAGCAGCAGuggacugcaagugggcu	chr5:149826855-149827186(-)$1	331	287	327	14.5165
CCUCCUGCACAAGAGAGCAGCCUGGAUCUCUUAAGUGUAG	chr12:57913513-57913758(-)$1	245	141	181	14.3926
CCGCGGGCUCCGGGACUCGGCAUGGGGUCCCCGUCCCCGC	chr22:19706252-19706555(+)$1	303	127	167	12.6949
CCCCUGGCCAGGCUGCUCCCAGAGCGGGAGGGUACAGGGG	chr19:56171945-56172230(+)$1	285	45	85	13.7982
UCUGAAGAGGACCGGGCGAUAUUUGGGGAUCUCUUUAGGG	chr6:134274560-134274899(+)$1	339	200	240	15.5567
CCACCAGACUCGGAGGUAAGCUUGCCAUGGAUUCACAUGG	chr7:73111770-73112032(+)$1	262	61	101	11.8363
GGAUCCUAGGAGGGUGGUGGAAAGGGUUCCCUGGGGCCAG	chr20:3199243-3199510(+)$1	267	202	242	15.2789
AGGUGUCUGACAAAAUAGUUAUUUGUUUUUUAUGAUAAUG	chr2:101905249-101905500(-)$1	251	115	155	13.1072
AAUGAUUAAAGUUCAUGAAUACUCUGGAAUUUUUUUUUUU	chr1:76256987-76257229(+)$1	242	58	98	13.1054
CAUACACGUUCUGGGCAGGCUGCUGCCCGCGACAUUGUGC	chr20:34214310-34214575(-)$1	265	18	58	14.2147
CACCAUCCUGACUGGGCUCCUGAGCUUCAUGGUGGAGAAG	chr1:1192378-1192658(-)$1	280	208	248	15.3930
GAGGCACAGGGUGGACCGAGGGGGUACACAGAGUGGCUGG	chr9:96435317-96435611(+)$1	294	135	175	12.6825

#DB
(.((((((((((..((((......))))))))))))))..	chr17:39845266-39845508(+)$1	1	73	113	15.9242
(....(((((((.((.((....)).)).))))))))))).	chr7:104703935-104704212(+)$1	1	134	174	13.1682
((...(((((.((..(((....))).))))))))))))))	chr12:56524648-56524941(+)$1	1	100	140	13.9943
(.(((...((.(.(((......))).).))....))).))	chr1:155885387-155885642(-)$1	1	95	135	14.1295
..(((((((((((.(......).))...)))))))))...	chr2:86711285-86711539(+)$1	1	179	219	15.7122
(((((.((((((...(((....))))))))).)))))..)	chr18:43669556-43669813(-)$1	1	34	74	12.3319
((.(((((.(.((.((((....)))).))...).))))).	chr11:61098882-61099141(-)$1	1	44	84	12.6924
(((((((((((.((.(((....)))))..))).)))))))	chr10:102107229-102107501(+)$1	1	68	108	15.1313
.((.(((((((((..(((....))).))...))))))).)	chr1:44450008-44450343(+)$1	1	240	280	14.2806
..(...(((.(((......))))))...)....)))))).	chr10:70940240-70940520(+)$1	1	71	111	11.1979
(((..(((..(...(((......)))).)))..)))))).	chr17:42290415-42290661(-)$1	1	66	106	14.6344
.((((((((((.((((((...))))))..)))))))))).	chrX:47060743-47061023(+)$1	1	47	87	15.1372
(..(((((...(((.(((....)))...)))....)))))	chr2:173435490-173435753(+)$1	1	148	188	14.7624
(((((((((((...((((.....)))))))))))))))..	chr17:25638581-25638841(+)$1	1	204	244	13.9006
((((((((((((...(((...))))))))..)))))))))	chr18:47811685-47811924(-)$1	1	130	170	15.0416
(.(((((((....(((((....)))))...)))))))..)	chr19:1105755-1106037(+)$1	1	58	98	14.8265
((((((((((..(.(((.....))).).)))).)))))))	chr12:117479584-117479843(-)$1	1	200	240	13.9267
(((((((((((((.(((.....)))....))))))))).)	chr21:44527144-44527449(-)$1	1	150	190	15.4460
(((..(....((.(((......)))))...)..)))))))	chr1:45227600-45227883(+)$1	1	142	182	15.6389
(.((((((.((((..(((....)))..)))).)))....)	chr12:120592565-120592872(-)$1	1	88	128	13.7004
(...(((...((((.(((.....))).)))).)))...))	chr19:9938833-9939090(+)$1	1	191	231	12.8998
.((((.(((.((.(((((....))).))...))))).)))	chr1:201837841-201838107(+)$1	1	101	141	12.1436
(((((((....((.((((....)))).))..))))))).)	chr21:46912332-46912603(+)$1	1	205	245	14.2665
((((((....(((.((.(...).))...)))...))))))	chr19:36122036-36122346(+)$1	1	134	174	15.8580
((((((((((..(.((((....)))).)..))))).))))	chr1:228334917-228335198(+)$1	1	210	250	11.6777
((((....((((...(((....))).))))...)))))).	chr2:153549475-153549697(-)$1	1	120	160	13.8346
..(((((((...((((((....))))))...)))))))))	chr5:68470191-68470432(+)$1	1	23	63	14.8424
(((((((((.(((.((.....)))))..))).))))))).	chr1:46733161-46733463(+)$1	1	63	103	11.7225
.((((((.((.((...(((...)))...))))))))))..	chr19:59068126-59068411(-)$1	1	180	220	12.6364
(((((((((((((.(((.....))))))))))...)))..	chr19:59063217-59063496(-)$1	1	168	208	13.6850
(((((((((((.....((....))....)))))..)))))	chr17:7579488-7579752(-)$1	1	21	61	13.4912
((((((((((...(((((....)))))............)	chr12:57892335-57892589(+)$1	1	160	200	12.0254
(((((.(...(((.(.((....)).))))...).))).))	chr6:44191330-44191654(+)$1	1	152	192	13.6691
(((((((...(((.(((((...))))).))).))))))).	chr17:49054333-49054588(-)$1	1	73	113	14.2371
(((((((((((((.(((((...))).)).)))))).))))	chr16:71956668-71956918(+)$1	1	87	127	12.5693
((((((...(((((((((...)))))))))))))))(((.	chr11:67048257-67048521(+)$1	1	45	85	12.6275
((((((((..(((((((.....))))).))..))))))))	chr11:118630426-118630754(-)$1	1	252	292	12.8129
.(((((.(((((((..((.....))..)))))))....))	chr15:101826896-101827199(-)$1	1	153	193	12.0850
.((((..(((((((((((......)))))))))))..)))	chr8:38099772-38100086(+)$1	1	58	98	13.9443
..(((((((((.....((.....))...)))))))))..)	chr12:21661386-21661647(+)$1	1	9	49	14.6092
((((((((((((..(((.....))))))))))))))))))	chr17:7529806-7530075(-)$1	1	73	113	17.4544
(((((.((..((((.(((......))).))))..).).))	chr10:1094572-1094874(-)$1	1	164	204	13.2414
)))))((((((((.((((....))).).)))))...))).	chr6:160148827-160149074(+)$1	1	20	60	12.5554
(((.(((((((.((((((....))))))))))))).)))(	chr11:118959935-118960208(+)$1	1	163	203	13.2831
(.((((((.(((((((((....))))))))).)))))).)	chr1:153949368-153949639(-)$1	1	36	76	13.8921
..(((((((..(((((.(......)))))))))))))...	chr17:57742211-57742484(+)$1	1	15	55	12.2570
((((((((((((((((((....)))...))))))))))))	chr5:154169867-154170181(+)$1	1	243	283	18.9614
.(((((((((...(((.((....))...))))))))))))	chr19:3982620-3982875(-)$1	1	195	235	15.2631
(((((.((.((((.((((....)))).)))).))))))))	chr3:195781772-195781997(-)$1	1	139	179	12.3863
((((((((......((((......))))))))))))))).	chr1:161136998-161137307(+)$1	1	91	131	12.3654
((..((((((((((..((....))...))))))).)))..	chr5:149826855-149827186(-)$1	1	287	327	14.5165
((((((((((((((((.(......).))))))..))))))	chr12:57913513-57913758(-)$1	1	141	181	14.3926
)((((((..(.(((((((......))))))).)..)))))	chr22:19706252-19706555(+)$1	1	127	167	12.6949
(((((((((...((((((...))))))...))).))))))	chr19:56171945-56172230(+)$1	1	45	85	13.7982
((((((((((.((.((......)).))..)))))))))))	chr6:134274560-134274899(+)$1	1	200	240	15.5567
((.(((((.((.(.((((....)))).).)).))...)))	chr7:73111770-73112032(+)$1	1	61	101	11.8363
((.(((((((.(((...(....)...))))))))))))).	chr20:3199243-3199510(+)$1	1	202	242	15.2789
...((((..(.(((((((....))))))).)..))))...	chr2:101905249-101905500(-)$1	1	115	155	13.1072
((.((..(((((((..((....))..)))))))..))...	chr1:76256987-76257229(+)$1	1	58	98	13.1054
((((...(((.(((((((....))))))).)))..)))))	chr20:34214310-34214575(-)$1	1	18	58	14.2147
(((((...(((...((((....)))))))))))))))).)	chr1:1192378-1192658(-)$1	1	208	248	15.3930
.((.(((...(((.(((.....))).)))...))).))((	chr9:96435317-96435611(+)$1	1	135	175	12.6825

#PSSM
g : 0.19	= : 0.16	c : 0.14	" : 0.08	e : 0.08	f : 0.06	[ : 0.06	i : 0.04	! : 0.04	d : 0.04	: : 0.03	a : 0.01	b : 0.01	
g : 0.17	= : 0.17	f : 0.09	[ : 0.08	e : 0.08	" : 0.06	i : 0.06	! : 0.06	d : 0.06	c : 0.06	b : 0.04	# : 0.01	
g : 0.20	= : 0.19	f : 0.11	i : 0.09	c : 0.06	e : 0.06	[ : 0.06	" : 0.04	d : 0.04	b : 0.03	! : 0.03	# : 0.01	a : 0.01	
g : 0.22	= : 0.17	i : 0.09	e : 0.09	f : 0.09	c : 0.08	" : 0.04	[ : 0.04	! : 0.04	d : 0.04	# : 0.01	b : 0.01	
g : 0.24	= : 0.17	c : 0.12	i : 0.11	e : 0.08	f : 0.08	" : 0.04	d : 0.04	# : 0.03	! : 0.03	b : 0.01	
g : 0.22	= : 0.17	c : 0.12	i : 0.09	e : 0.08	[ : 0.08	" : 0.06	f : 0.06	! : 0.03	a : 0.01	# : 0.01	d : 0.01	
g : 0.17	= : 0.16	c : 0.16	i : 0.09	e : 0.08	" : 0.06	f : 0.06	# : 0.04	d : 0.03	a : 0.03	! : 0.03	b : 0.03	[ : 0.01	
g : 0.17	= : 0.16	c : 0.12	" : 0.11	e : 0.09	i : 0.09	# : 0.06	f : 0.04	b : 0.03	! : 0.03	d : 0.01	[ : 0.01	a : 0.01	
g : 0.17	= : 0.14	c : 0.11	" : 0.09	e : 0.08	[ : 0.08	! : 0.08	i : 0.06	# : 0.04	b : 0.03	f : 0.03	d : 0.03	% : 0.01	
= : 0.14	g : 0.12	" : 0.11	i : 0.09	e : 0.08	! : 0.06	# : 0.06	d : 0.06	b : 0.04	a : 0.04	c : 0.04	[ : 0.04	f : 0.03	% : 0.01	
[ : 0.14	c : 0.12	g : 0.11	= : 0.09	i : 0.08	" : 0.08	d : 0.08	b : 0.06	f : 0.04	e : 0.04	! : 0.04	# : 0.03	a : 0.01	% : 0.01	
b : 0.16	g : 0.12	c : 0.12	" : 0.11	d : 0.08	= : 0.06	[ : 0.06	f : 0.04	e : 0.04	i : 0.04	! : 0.03	$ : 0.03	a : 0.01	# : 0.01	% : 0.01	
b : 0.12	" : 0.12	c : 0.12	g : 0.11	f : 0.09	[ : 0.06	d : 0.06	a : 0.04	i : 0.04	e : 0.04	! : 0.03	$ : 0.03	= : 0.03	# : 0.01	% : 0.01	
[ : 0.27	" : 0.11	g : 0.09	! : 0.08	c : 0.08	f : 0.08	e : 0.06	b : 0.04	d : 0.03	$ : 0.03	i : 0.03	= : 0.03	o : 0.01	% : 0.01	
d : 0.14	c : 0.14	b : 0.09	! : 0.09	" : 0.08	f : 0.08	e : 0.08	[ : 0.06	a : 0.04	g : 0.04	$ : 0.03	i : 0.03	= : 0.03	o : 0.01	
c : 0.35	d : 0.14	f : 0.08	e : 0.08	b : 0.06	! : 0.04	g : 0.04	[ : 0.03	o : 0.03	" : 0.03	$ : 0.03	i : 0.03	= : 0.01	
c : 0.33	d : 0.14	b : 0.11	o : 0.08	f : 0.06	e : 0.06	[ : 0.06	g : 0.04	i : 0.03	n : 0.01	= : 0.01	" : 0.01	
c : 0.24	d : 0.14	b : 0.12	n : 0.11	o : 0.09	f : 0.06	a : 0.06	e : 0.04	g : 0.04	i : 0.03	= : 0.01	
m : 0.46	o : 0.20	n : 0.17	l : 0.08	c : 0.03	e : 0.01	b : 0.01	
m : 0.48	o : 0.19	n : 0.17	l : 0.12	c : 0.01	
m : 0.48	o : 0.19	n : 0.17	l : 0.12	c : 0.01	
m : 0.48	o : 0.17	n : 0.16	l : 0.04	a : 0.03	c : 0.03	f : 0.03	b : 0.01	i : 0.01	
c : 0.33	o : 0.12	b : 0.11	d : 0.09	f : 0.06	n : 0.06	e : 0.06	] : 0.03	i : 0.03	g : 0.03	m : 0.01	a : 0.01	
c : 0.38	b : 0.17	o : 0.11	d : 0.11	f : 0.06	e : 0.06	i : 0.03	g : 0.03	3 : 0.01	
c : 0.38	d : 0.14	b : 0.08	e : 0.08	f : 0.06	] : 0.04	g : 0.04	i : 0.03	a : 0.03	3 : 0.03	4 : 0.01	= : 0.01	2 : 0.01	
] : 0.16	3 : 0.16	d : 0.14	e : 0.09	f : 0.08	b : 0.06	c : 0.06	g : 0.06	2 : 0.04	4 : 0.03	i : 0.03	= : 0.03	a : 0.01	
3 : 0.14	b : 0.12	f : 0.09	] : 0.09	e : 0.09	g : 0.08	c : 0.08	d : 0.06	a : 0.06	2 : 0.04	4 : 0.03	i : 0.03	= : 0.03	
3 : 0.17	] : 0.12	g : 0.11	d : 0.09	b : 0.09	f : 0.06	2 : 0.06	c : 0.06	= : 0.04	e : 0.03	4 : 0.03	a : 0.03	i : 0.03	> : 0.01	
c : 0.16	g : 0.14	= : 0.09	3 : 0.09	d : 0.09	e : 0.08	b : 0.08	i : 0.06	2 : 0.06	f : 0.03	] : 0.03	a : 0.01	4 : 0.01	> : 0.01	
3 : 0.14	= : 0.12	g : 0.12	c : 0.11	i : 0.09	d : 0.09	e : 0.06	b : 0.06	f : 0.04	2 : 0.04	] : 0.03	4 : 0.01	> : 0.01	
g : 0.16	c : 0.14	= : 0.12	3 : 0.11	i : 0.08	d : 0.08	e : 0.06	f : 0.06	2 : 0.04	4 : 0.03	a : 0.03	b : 0.03	> : 0.01	
g : 0.19	= : 0.14	] : 0.14	i : 0.08	3 : 0.08	e : 0.06	2 : 0.06	4 : 0.04	c : 0.04	f : 0.04	d : 0.03	b : 0.03	> : 0.01	
g : 0.20	= : 0.14	i : 0.09	e : 0.08	2 : 0.08	c : 0.08	f : 0.06	4 : 0.04	a : 0.04	b : 0.04	3 : 0.04	] : 0.03	> : 0.01	
g : 0.22	= : 0.16	i : 0.11	f : 0.11	2 : 0.09	c : 0.06	] : 0.04	3 : 0.04	4 : 0.03	e : 0.03	b : 0.03	> : 0.01	d : 0.01	
g : 0.24	= : 0.17	i : 0.11	f : 0.11	c : 0.09	2 : 0.06	e : 0.04	3 : 0.04	4 : 0.03	> : 0.01	a : 0.01	] : 0.01	d : 0.01	
g : 0.22	= : 0.17	i : 0.11	f : 0.11	c : 0.09	] : 0.08	e : 0.04	3 : 0.04	4 : 0.03	> : 0.01	2 : 0.01	d : 0.01	b : 0.01	
g : 0.22	= : 0.17	c : 0.14	i : 0.11	f : 0.11	e : 0.04	4 : 0.03	3 : 0.03	b : 0.03	] : 0.01	> : 0.01	2 : 0.01	a : 0.01	d : 0.01	
g : 0.19	= : 0.17	c : 0.12	f : 0.11	i : 0.08	3 : 0.06	] : 0.04	2 : 0.04	e : 0.03	4 : 0.03	d : 0.03	> : 0.01	6 : 0.01	b : 0.01	
g : 0.17	= : 0.14	c : 0.11	2 : 0.09	] : 0.08	f : 0.08	3 : 0.06	e : 0.06	i : 0.04	d : 0.03	a : 0.01	: : 0.01	4 : 0.01	> : 0.01	b : 0.01	6 : 0.01	
g : 0.14	e : 0.12	= : 0.12	] : 0.11	3 : 0.09	c : 0.08	2 : 0.04	i : 0.04	b : 0.04	: : 0.04	d : 0.03	f : 0.03	a : 0.01	[ : 0.01	6 : 0.01	

#score	859.4541613308901
#seq	62
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_CDS_m1_run2.txt

#BEAR
ffffffuuuuuuuuuuuufffff	chr17:34149548-34149792(+)$1	244	134	157	21.8559
ddddyyyyyyyyyyyyyyyyddd	chr19:11151879-11152126(+)$1	247	143	166	20.6390
=====wwwwwwwwwwwwww====	chr1:46079667-46079941(+)$1	274	102	125	22.9416
ggggguuuuuuuuuuuugggggg	chr2:109381076-109381351(+)$1	275	150	173	22.9143
dd"""auuuuuuuuuuuua333d	chr14:73570009-73570286(+)$1	277	50	73	22.7408
iii[ayyyyyyyyyyyyyyyyai	chr10:75830669-75830942(+)$1	273	144	167	20.9968
eeeeeuuuuuuuuuuuueeeee2	chr16:90097722-90098005(+)$1	283	98	121	22.9517
ff[bbvvvvvvvvvvvvvbb]ff	chr6:90383029-90383250(-)$1	221	69	92	22.7949
ffff[attttttttttta]ffff	chr14:35522388-35522762(+)$1	374	112	135	21.8346
eeeeevvvvvvvvvvvvveeeee	chr3:9482057-9482401(+)$1	344	190	213	24.1197
eeeeeuuuuuuuuuuuueeeee:	chr16:14721928-14722192(-)$1	264	38	61	22.1317
[ddddvvvvvvvvvvvvvdddd]	chr2:242187371-242187592(-)$1	221	108	131	23.4857
""cccvvvvvvvvvvvvvccc22	chr1:114947938-114948250(-)$1	312	45	68	23.6064
gggggvvvvvvvvvvvvvggggg	chr15:77473372-77473713(-)$1	341	21	44	24.0362
d!!ddddtttttttttttdddd]	chr6:12123699-12123962(+)$1	263	186	209	20.6535
eeeeevvvvvvvvvvvvveeeee	chrX:123189932-123190170(+)$1	238	152	175	24.1197
[ddddvvvvvvvvvvvvvdddd]	chrX:53438745-53438951(-)$1	206	47	70	23.4857
$dddduuuuuuuuuuuuddddii	chr3:101219836-101220063(-)$1	227	177	200	22.0254
eee[ccctttttttttttcccee	chr19:10251355-10251575(-)$1	220	134	157	21.9153
hhhhhhuuuuuuuuuuuuhhhhh	chr2:70901715-70902028(-)$1	313	54	77	20.9306
ffffyyyyyyyyyyyyyyyyfff	chr19:1010680-1010890(-)$1	210	114	137	20.7360
eeeeevvvvvvvvvvvvveeeee	chr15:93545357-93545645(+)$1	288	240	263	24.1197
ddddwwwwwwwwwwwwwwdddd]	chr17:65850482-65850774(+)$1	292	67	90	22.0285
eeeeevvvvvvvvvvvvveeeee	chr6:44217659-44217870(+)$1	211	187	210	24.1197
eeeeyyyyyyyyyyyyyyyyeee	chr10:103565702-103565907(-)$1	205	16	39	21.5992
======uuuuuuuuuuuu=====	chr1:52290858-52291060(-)$1	202	103	126	23.1089
!eeeeettttttttttteeeee]	chr18:66344040-66344426(-)$1	386	303	326	21.9058
eeeeewwwwwwwwwwwwwweeee	chr9:131023350-131023554(-)$1	204	22	45	23.0937
fffffwwwwwwwwwwwwwwffff	chr17:48814251-48814479(+)$1	228	33	56	21.9969
cccccvvvvvvvvvvvvvccc]c	chr14:70235240-70235486(+)$1	246	135	158	23.8524
eeeeewwwwwwwwwwwwwweeee	chrX:69623613-69623829(+)$1	216	58	81	23.0937
ggggyyyyyyyyyyyyyyyyggg	chr5:70763089-70763397(+)$1	308	273	296	21.4948
[cccwwwwwwwwwwwwwwccc]b	chr5:180687164-180687555(-)$1	391	183	206	22.3819
eeeeeuuuuuuuuuuuueeeee]	chr17:73664511-73664807(+)$1	296	234	257	23.1853
:ddddvvvvvvvvvvvvvdddd:	chr3:169835128-169835366(-)$1	238	158	181	21.2341
!!cccvvvvvvvvvvvvvccc22	chr14:103918156-103918419(+)$1	263	76	99	23.8867
gggggwwwwwwwwwwwwwwgggg	chr15:42005474-42005761(+)$1	287	250	273	23.0040
ggggggtttttttttttgggggg	chrX:134988141-134988398(+)$1	257	107	130	21.5823
ffffyyyyyyyyyyyyyyyyfff	chr19:14626680-14626920(-)$1	240	58	81	20.7360
eeeeewwwwwwwwwwwwwweeee	chr2:27898342-27898653(+)$1	311	176	199	23.0937
[dddduuuuuuuuuuuudddd]a	chr16:24801638-24801895(+)$1	257	76	99	22.3566
!!cccvvvvvvvvvvvvvcccee	chr16:1793240-1793502(+)$1	262	29	52	24.2183
ggggguuuuuuuuuuuugggggg	chr4:68378019-68378249(-)$1	230	101	124	22.9143
e!!cccuuuuuuuuuuuuccc22	chr5:176397623-176397915(-)$1	292	49	72	23.0733
eee[ccctttttttttttcccee	chr10:7840853-7841104(+)$1	251	55	78	21.9153
ffffyyyyyyyyyyyyyyyyfff	chr4:13603929-13604185(-)$1	256	14	37	20.7360
"""bbvvvvvvvvvvvvvbb22d	chr10:70098200-70098469(+)$1	269	153	176	22.3248
""cccvvvvvvvvvvvvvccc]f	chr9:140638252-140638505(+)$1	253	38	61	23.8316
gggggvvvvvvvvvvvvvggggg	chr3:121414111-121414399(-)$1	288	117	140	24.0362
ee!!bbtttttttttttbb]eee	chr11:122928487-122928707(-)$1	220	35	58	21.3374
hhhhhvvvvvvvvvvvvvhhhhh	chr5:137499678-137499887(-)$1	209	108	131	22.2858
eee[awwwwwwwwwwwwwwaeee	chr20:40116967-40117232(-)$1	265	88	111	23.1902
[eeeeettttttttttteeeee]	chr20:31041116-31041368(-)$1	252	118	141	21.9199
c[cccwwwwwwwwwwwwwwcccc	chr20:43559189-43559496(+)$1	307	185	208	22.6795
hhhhhyyyyyyyyyyyyyyyyhh	chr14:56101172-56101438(+)$1	266	3	26	19.9811
fffffwwwwwwwwwwwwwwffff	chr4:104069901-104070117(-)$1	216	97	120	21.9969
hhhhhvvvvvvvvvvvvvhhhhh	chr12:116445102-116445367(-)$1	265	70	93	22.2858
ddddwwwwwwwwwwwwwwdddd:	chr17:62523130-62523484(+)$1	354	259	282	20.9748
eeeeeuuuuuuuuuuuueeeee:	chr19:6416553-6416759(-)$1	206	98	121	22.1317
+cccwwwwwwwwwwwwwwccc>>	chr10:135098925-135099201(-)$1	276	37	60	21.2619
eeeeevvvvvvvvvvvvveeeee	chr19:13051322-13051567(+)$1	245	48	71	24.1197
gggggwwwwwwwwwwwwwwgggg	chr14:73566297-73566562(+)$1	265	55	78	23.0040
ee[bbvvvvvvvvvvvvvbb]ee	chr3:52727954-52728219(+)$1	265	117	140	23.3207
ggggggtttttttttttgggggg	chr5:138661168-138661430(+)$1	262	162	185	21.5823
d!!bbvvvvvvvvvvvvvbb22d	chr2:232325090-232325306(-)$1	216	67	90	22.5645
ddcccyyyyyyyyyyyyyyyycc	chr5:137765429-137765683(+)$1	254	88	111	20.7035
ddd!!bbtttttttttttbb333	chr4:57367762-57368061(+)$1	299	176	199	20.5476

#otherMatches

#Seq PSSM
UGGUCAACAAGAUUCAUAUGACC	chr17:34149548-34149792(+)$1	244	134	157	21.8559
UCCGGCAGAAGAAAUCAUCACGG	chr19:11151879-11152126(+)$1	247	143	166	20.6390
UCUUCAAGAAAAUGAGGAGGAGG	chr1:46079667-46079941(+)$1	274	102	125	22.9416
UGACUCCAAAGAAAGAAGGUCAC	chr2:109381076-109381351(+)$1	275	150	173	22.9143
gggaacgagaacgggauagggac	chr14:73570009-73570286(+)$1	277	50	73	22.7408
GUCACUUACACAAAGAAUCUUGG	chr10:75830669-75830942(+)$1	273	144	167	20.9968
CAGCUGGAGGAGAAGAAGGCUGA	chr16:90097722-90098005(+)$1	283	98	121	22.9517
GAAAGAUUUUGAAGUUUGCUCUU	chr6:90383029-90383250(-)$1	221	69	92	22.7949
CUUUGAAAAUGUAGAACUGGGAG	chr14:35522388-35522762(+)$1	374	112	135	21.8346
AGUGCAGAUGUACAGAACGCGCU	chr3:9482057-9482401(+)$1	344	190	213	24.1197
UUAGUAUUUAUUAGUAAGCUAAA	chr16:14721928-14722192(-)$1	264	38	61	22.1317
GCUCAGAGGACCUAAGAAUGAGG	chr2:242187371-242187592(-)$1	221	108	131	23.4857
AAGCCUCAUGCACAGGUCGGCAA	chr1:114947938-114948250(-)$1	312	45	68	23.6064
CCACCAAGUUGCAUGAUAGGUGG	chr15:77473372-77473713(-)$1	341	21	44	24.0362
GGCUGAGAUAGAACAUUCCUCAA	chr6:12123699-12123962(+)$1	263	186	209	20.6535
AGUAAAUCUAUAUAUCUGUUACU	chrX:123189932-123190170(+)$1	238	152	175	24.1197
CUGACAUCUGCUGACUUGGUCAU	chrX:53438745-53438951(-)$1	206	47	70	23.4857
UUAUCUUUGGAGUUACUGAUAUU	chr3:101219836-101220063(-)$1	227	177	200	22.0254
CUCCAUCUCUGAAUACCUGGUGA	chr19:10251355-10251575(-)$1	220	134	157	21.9153
CUGUGGUUAACUUUCAGUCUACA	chr2:70901715-70902028(-)$1	313	54	77	20.9306
CCGAUGACAUGAACAACAACUCG	chr19:1010680-1010890(-)$1	210	114	137	20.7360
CAUUUGGAUUUAGAAGUAGAAUG	chr15:93545357-93545645(+)$1	288	240	263	24.1197
CAGUUUCUUACAACAAAUAUUGC	chr17:65850482-65850774(+)$1	292	67	90	22.0285
GUGAAGAAGCAUUCUCAGUUCAU	chr6:44217659-44217870(+)$1	211	187	210	24.1197
GCACUUUCUGUUAUCCAAAUGUG	chr10:103565702-103565907(-)$1	205	16	39	21.5992
UAAGAUACUAAAUACAUCAUCUU	chr1:52290858-52291060(-)$1	202	103	126	23.1089
AGUCUAUUUAUUGAAUUUAGACA	chr18:66344040-66344426(-)$1	386	303	326	21.9058
ACAUUGAGAGAGGAGAAGGAAUG	chr9:131023350-131023554(-)$1	204	22	45	23.0937
AGCAAUUUUUUAAGUACCUUUGU	chr17:48814251-48814479(+)$1	228	33	56	21.9969
AACUCUGUAGUGAAAGGUGAGAU	chr14:70235240-70235486(+)$1	246	135	158	23.8524
GGUCAUUCUUCAAAUAAACUGAU	chrX:69623613-69623829(+)$1	216	58	81	23.0937
UUGACUGUUUCUGAAUUAAAUCA	chr5:70763089-70763397(+)$1	308	273	296	21.4948
ACCGAGAAGAAGAAAUACUGGAA	chr5:180687164-180687555(-)$1	391	183	206	22.3819
UUUCAUUUGUCAGAUUUUGGAAC	chr17:73664511-73664807(+)$1	296	234	257	23.1853
UCAGAUCCCUCACAUGUUUCUGU	chr3:169835128-169835366(-)$1	238	158	181	21.2341
CGUGUCCUCUCCUCUCCCGCAGU	chr14:103918156-103918419(+)$1	263	76	99	23.8867
CAUAUCAGUUUUUGGAAAAGUAU	chr15:42005474-42005761(+)$1	287	250	273	23.0040
UCUUGUCAACUGGUCCCACAGGG	chrX:134988141-134988398(+)$1	257	107	130	21.5823
CCCAAAACACCCGAGAAACGUGG	chr19:14626680-14626920(-)$1	240	58	81	20.7360
CUGGCAAGAUUGAUGAGAAGCCA	chr2:27898342-27898653(+)$1	311	176	199	23.0937
AUCAUGGGGAAGUGGAAAUGGCG	chr16:24801638-24801895(+)$1	257	76	99	22.3566
CUUGGGAAAUCUUCACGGCCACC	chr16:1793240-1793502(+)$1	262	29	52	24.2183
UGAUUGGUGGGUGGUAAAAUCAG	chr4:68378019-68378249(-)$1	230	101	124	22.9143
GAUGACAGAAGAAGAACAGUUUG	chr5:176397623-176397915(-)$1	292	49	72	23.0733
GUGUAUUGCAUAUAAAAAAAUUA	chr10:7840853-7841104(+)$1	251	55	78	21.9153
UGCUGAAACUGUCAAACUUAAGC	chr4:13603929-13604185(-)$1	256	14	37	20.7360
AGACCAAUAGGAGGAAGAGGGGG	chr10:70098200-70098469(+)$1	269	153	176	22.3248
AAGCAAGUUUGUUCAUGAUGCGC	chr9:140638252-140638505(+)$1	253	38	61	23.8316
GCUGGAAGAAGAGAAUGACCGGC	chr3:121414111-121414399(-)$1	288	117	140	24.0362
UUAACAUUAAAAGAACUUGCAGU	chr11:122928487-122928707(-)$1	220	35	58	21.3374
AAAGGUAUUUCAGACUUUUCUUU	chr5:137499678-137499887(-)$1	209	108	131	22.2858
GUGUGAUAAUUGAUGAAGCCCAC	chr20:40116967-40117232(-)$1	265	88	111	23.1902
AUCUCCAAGCAGCCCAAGGAGAA	chr20:31041116-31041368(-)$1	252	118	141	21.9199
CCUGCCCGCAACUCCCACCGCAG	chr20:43559189-43559496(+)$1	307	185	208	22.6795
UAUGUUUUGUUUAUUUCUUAUAU	chr14:56101172-56101438(+)$1	266	3	26	19.9811
AUACCAAAUUACAAGAAGAGGUA	chr4:104069901-104070117(-)$1	216	97	120	21.9969
AGAUGGUGACAUAAAAUACAUCU	chr12:116445102-116445367(-)$1	265	70	93	22.2858
CCCCAGAGAGACUGAGAAGGGGG	chr17:62523130-62523484(+)$1	354	259	282	20.9748
GUGGCGAGAAUGUGAAAGCCAUA	chr19:6416553-6416759(-)$1	206	98	121	22.1317
UGGAUGCUUUGUUUCAUUUCCUU	chr10:135098925-135099201(-)$1	276	37	60	21.2619
AGCAUAUCCCUGACCCUGAUGCU	chr19:13051322-13051567(+)$1	245	48	71	24.1197
UCCUGUGCCCGUUUUCUUUUAGG	chr14:73566297-73566562(+)$1	265	55	78	23.0040
UUGCUGCAGAAGAGACAGGGGAG	chr3:52727954-52728219(+)$1	265	117	140	23.3207
AUCAGCCCAAUGUUCCUGUUGGU	chr5:138661168-138661430(+)$1	262	162	185	21.5823
AAAUGGCCAAACAGAAAGCAGCU	chr2:232325090-232325306(-)$1	216	67	90	22.5645
UACUCAAGACAAUUGACGAGGGA	chr5:137765429-137765683(+)$1	254	88	111	20.7035
CCCCAAGACACCAGAAACCUGCA	chr4:57367762-57368061(+)$1	299	176	199	20.5476

#DB
((((((............)))))	chr17:34149548-34149792(+)$1	1	134	157	21.8559
((((................)))	chr19:11151879-11152126(+)$1	1	143	166	20.6390
(((((..............))))	chr1:46079667-46079941(+)$1	1	102	125	22.9416
(((((............))))))	chr2:109381076-109381351(+)$1	1	150	173	22.9143
((...(............)...)	chr14:73570009-73570286(+)$1	1	50	73	22.7408
(((.(................))	chr10:75830669-75830942(+)$1	1	144	167	20.9968
(((((............))))).	chr16:90097722-90098005(+)$1	1	98	121	22.9517
((.((.............)).))	chr6:90383029-90383250(-)$1	1	69	92	22.7949
((((.(...........).))))	chr14:35522388-35522762(+)$1	1	112	135	21.8346
(((((.............)))))	chr3:9482057-9482401(+)$1	1	190	213	24.1197
(((((............))))).	chr16:14721928-14722192(-)$1	1	38	61	22.1317
.((((.............)))).	chr2:242187371-242187592(-)$1	1	108	131	23.4857
..(((.............)))..	chr1:114947938-114948250(-)$1	1	45	68	23.6064
(((((.............)))))	chr15:77473372-77473713(-)$1	1	21	44	24.0362
(..((((...........)))).	chr6:12123699-12123962(+)$1	1	186	209	20.6535
(((((.............)))))	chrX:123189932-123190170(+)$1	1	152	175	24.1197
.((((.............)))).	chrX:53438745-53438951(-)$1	1	47	70	23.4857
.((((............))))))	chr3:101219836-101220063(-)$1	1	177	200	22.0254
(((.(((...........)))))	chr19:10251355-10251575(-)$1	1	134	157	21.9153
((((((............)))))	chr2:70901715-70902028(-)$1	1	54	77	20.9306
((((................)))	chr19:1010680-1010890(-)$1	1	114	137	20.7360
(((((.............)))))	chr15:93545357-93545645(+)$1	1	240	263	24.1197
((((..............)))).	chr17:65850482-65850774(+)$1	1	67	90	22.0285
(((((.............)))))	chr6:44217659-44217870(+)$1	1	187	210	24.1197
((((................)))	chr10:103565702-103565907(-)$1	1	16	39	21.5992
((((((............)))))	chr1:52290858-52291060(-)$1	1	103	126	23.1089
.(((((...........))))).	chr18:66344040-66344426(-)$1	1	303	326	21.9058
(((((..............))))	chr9:131023350-131023554(-)$1	1	22	45	23.0937
(((((..............))))	chr17:48814251-48814479(+)$1	1	33	56	21.9969
(((((.............))).)	chr14:70235240-70235486(+)$1	1	135	158	23.8524
(((((..............))))	chrX:69623613-69623829(+)$1	1	58	81	23.0937
((((................)))	chr5:70763089-70763397(+)$1	1	273	296	21.4948
.(((..............))).)	chr5:180687164-180687555(-)$1	1	183	206	22.3819
(((((............))))).	chr17:73664511-73664807(+)$1	1	234	257	23.1853
.((((.............)))).	chr3:169835128-169835366(-)$1	1	158	181	21.2341
..(((.............)))..	chr14:103918156-103918419(+)$1	1	76	99	23.8867
(((((..............))))	chr15:42005474-42005761(+)$1	1	250	273	23.0040
((((((...........))))))	chrX:134988141-134988398(+)$1	1	107	130	21.5823
((((................)))	chr19:14626680-14626920(-)$1	1	58	81	20.7360
(((((..............))))	chr2:27898342-27898653(+)$1	1	176	199	23.0937
.((((............)))).)	chr16:24801638-24801895(+)$1	1	76	99	22.3566
..(((.............)))))	chr16:1793240-1793502(+)$1	1	29	52	24.2183
(((((............))))))	chr4:68378019-68378249(-)$1	1	101	124	22.9143
(..(((............)))..	chr5:176397623-176397915(-)$1	1	49	72	23.0733
(((.(((...........)))))	chr10:7840853-7841104(+)$1	1	55	78	21.9153
((((................)))	chr4:13603929-13604185(-)$1	1	14	37	20.7360
...((.............))..)	chr10:70098200-70098469(+)$1	1	153	176	22.3248
..(((.............))).)	chr9:140638252-140638505(+)$1	1	38	61	23.8316
(((((.............)))))	chr3:121414111-121414399(-)$1	1	117	140	24.0362
((..((...........)).)))	chr11:122928487-122928707(-)$1	1	35	58	21.3374
(((((.............)))))	chr5:137499678-137499887(-)$1	1	108	131	22.2858
(((.(..............))))	chr20:40116967-40117232(-)$1	1	88	111	23.1902
.(((((...........))))).	chr20:31041116-31041368(-)$1	1	118	141	21.9199
(.(((..............))))	chr20:43559189-43559496(+)$1	1	185	208	22.6795
(((((................))	chr14:56101172-56101438(+)$1	1	3	26	19.9811
(((((..............))))	chr4:104069901-104070117(-)$1	1	97	120	21.9969
(((((.............)))))	chr12:116445102-116445367(-)$1	1	70	93	22.2858
((((..............)))).	chr17:62523130-62523484(+)$1	1	259	282	20.9748
(((((............))))).	chr19:6416553-6416759(-)$1	1	98	121	22.1317
.(((..............)))..	chr10:135098925-135099201(-)$1	1	37	60	21.2619
(((((.............)))))	chr19:13051322-13051567(+)$1	1	48	71	24.1197
(((((..............))))	chr14:73566297-73566562(+)$1	1	55	78	23.0040
((.((.............)).))	chr3:52727954-52728219(+)$1	1	117	140	23.3207
((((((...........))))))	chr5:138661168-138661430(+)$1	1	162	185	21.5823
(..((.............))..)	chr2:232325090-232325306(-)$1	1	67	90	22.5645
(((((................))	chr5:137765429-137765683(+)$1	1	88	111	20.7035
(((..((...........))...	chr4:57367762-57368061(+)$1	1	176	199	20.5476

#PSSM
e : 0.28	g : 0.13	f : 0.11	d : 0.11	[ : 0.07	h : 0.05	" : 0.04	! : 0.04	= : 0.02	c : 0.02	i : 0.01	$ : 0.01	: : 0.01	+ : 0.01	
e : 0.29	d : 0.16	g : 0.13	f : 0.11	! : 0.07	h : 0.05	" : 0.04	c : 0.04	= : 0.02	i : 0.01	[ : 0.01	
e : 0.26	d : 0.13	g : 0.13	c : 0.13	f : 0.10	! : 0.05	h : 0.05	= : 0.02	" : 0.02	[ : 0.02	i : 0.01	
e : 0.22	c : 0.14	d : 0.13	g : 0.13	f : 0.10	[ : 0.05	b : 0.05	h : 0.05	= : 0.02	! : 0.02	" : 0.01	
e : 0.20	c : 0.14	g : 0.11	y : 0.08	d : 0.08	b : 0.07	h : 0.05	w : 0.05	f : 0.04	= : 0.02	a : 0.02	" : 0.01	[ : 0.01	! : 0.01	
v : 0.31	w : 0.20	y : 0.13	u : 0.11	c : 0.04	a : 0.02	e : 0.02	g : 0.02	b : 0.02	f : 0.01	d : 0.01	h : 0.01	= : 0.01	
v : 0.31	w : 0.20	u : 0.19	y : 0.13	t : 0.08	c : 0.02	d : 0.01	b : 0.01	
v : 0.31	w : 0.20	u : 0.19	t : 0.14	y : 0.13	
v : 0.31	w : 0.20	u : 0.19	t : 0.14	y : 0.13	
v : 0.31	w : 0.20	u : 0.19	t : 0.14	y : 0.13	
v : 0.31	w : 0.20	u : 0.19	t : 0.14	y : 0.13	
v : 0.31	w : 0.20	u : 0.19	t : 0.14	y : 0.13	
v : 0.31	w : 0.20	u : 0.19	t : 0.14	y : 0.13	
v : 0.31	w : 0.20	u : 0.19	t : 0.14	y : 0.13	
v : 0.31	w : 0.20	u : 0.19	t : 0.14	y : 0.13	
v : 0.31	w : 0.20	u : 0.19	t : 0.14	y : 0.13	
v : 0.31	w : 0.20	u : 0.19	t : 0.14	y : 0.13	
v : 0.31	w : 0.20	y : 0.13	e : 0.08	u : 0.07	g : 0.05	t : 0.05	d : 0.02	a : 0.01	b : 0.01	
e : 0.16	w : 0.14	c : 0.14	y : 0.13	d : 0.11	g : 0.08	b : 0.08	h : 0.04	f : 0.01	a : 0.01	] : 0.01	= : 0.01	
e : 0.20	c : 0.16	y : 0.13	g : 0.11	d : 0.11	b : 0.07	f : 0.05	h : 0.04	= : 0.02	3 : 0.01	] : 0.01	a : 0.01	
e : 0.25	c : 0.16	d : 0.13	g : 0.13	f : 0.10	y : 0.04	h : 0.04	= : 0.02	3 : 0.02	] : 0.02	2 : 0.02	
e : 0.31	g : 0.13	f : 0.11	d : 0.10	2 : 0.07	h : 0.05	] : 0.05	= : 0.02	3 : 0.02	c : 0.02	a : 0.01	i : 0.01	> : 0.01	
e : 0.22	f : 0.13	g : 0.13	] : 0.10	d : 0.05	2 : 0.05	: : 0.05	h : 0.05	c : 0.04	= : 0.02	i : 0.02	b : 0.01	a : 0.01	> : 0.01	3 : 0.01	

#score	1501.7295933848827
#seq	67
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_CDS_m1_run1.txt

#BEAR
======="""dddd!!ccclllccc333dddd22======	chr21:46914358-46914565(+)$1	207	104	144	16.5504
gggg[aa!!dddd[cccooooooccc]dddd22a]a]ggg	chr10:1094606-1094927(-)$1	321	218	258	15.7091
bb!!dddd"""ccccccnnnnnccc]ccc333dddd22bb	chr9:117026537-117026778(+)$1	241	174	214	17.6388
b[ccc[===========mmmm===========]ccc]bb]	chr9:117053054-117053295(+)$1	241	13	53	14.6580
bbgggggggdddd[cccnnnnnccc]dddd:cccmmmmcc	chr21:46907304-46907523(+)$1	219	73	113	14.1990
dddd[ggggggg"""bbnnnnnbb333ggggggg]dddd]	chr8:144940431-144940704(-)$1	273	154	194	15.8786
ffff[a[bb[gggggggnnnnnggggggg]bb]a]fffff	chr9:116999159-116999368(+)$1	209	74	114	16.4747
=========ccc[bboooooobb]ccc333==========	chr21:46908232-46908457(+)$1	225	126	166	15.1060
cc[a[ccc"""ffffffnnnnnffffffccc]a]ccc]dd	chr9:117052426-117052697(+)$1	271	74	114	16.9224
ccc[bb[ccc[ffffffnnnnnffffff]ccc]bb]ccc2	chr14:34931151-34931420(-)$1	269	70	110	15.3796
ffffff"""bb"""cccnnnnnccc4444bb22ffffffG	chr9:117053000-117053254(+)$1	254	2	42	16.7042
!eeeee[a[a[ccc[cccmmmmccc]ccc]a]a]eeeee2	chrX:41193667-41193974(+)$1	307	111	151	13.8516
c"""dddd!!gggggggnnnnnggggggg22dddd333cc	chr9:117062826-117063065(+)$1	239	184	224	16.5575
============!!cccnnnnnccc333============	chr14:39736575-39736846(+)$1	271	225	265	21.3098

#otherMatches

#Seq PSSM
AGCCGGGCUUCCGAGGACCCCCGGUAAGUCGGUCCCUGGC	chr21:46914358-46914565(+)$1	207	104	144	16.5504
ACCCGUGAGGUCUCGGCGCGGAGGCCUGGACAGCUGGGGG	chr10:1094606-1094927(-)$1	321	218	258	15.7091
UUCCUCACUCCUCCGACACUGGGUCAGGAAUCGUGAACAA	chr9:117026537-117026778(+)$1	241	174	214	17.6388
CCUCUGCCUGCUUUCUUAACAGGGGGAGCAGGGAGACGAU	chr9:117053054-117053295(+)$1	241	13	53	14.6580
CGGGGGGCCCUUCUGGUCAACAGCCCGAAGCGCUGAUGGG	chr21:46907304-46907523(+)$1	219	73	113	14.1990
UGGUGGGCGGCGAGAUCCAGGAGAAGCUGCUGUCGGCCGA	chr8:144940431-144940704(-)$1	273	154	194	15.8786
CCCCAGCCUGCUCUGGAUCUCUUCCAGGGGAGCCAGGGGU	chr9:116999159-116999368(+)$1	209	74	114	16.4747
GUCAGUGACGGAUAUGUCUGGGUUUCUGUGGUUGCUGGCU	chr21:46908232-46908457(+)$1	225	126	166	15.1060
CAGGGCCUGCAGGGGCUGCCAGGGCCCCGGGGCGUGGUGG	chr9:117052426-117052697(+)$1	271	74	114	16.9224
CUGGUCACGGCGCUCUACAUGCUGGAGCCCUGGGAGCGGA	chr14:34931151-34931420(-)$1	269	70	110	15.3796
CCAGGGUUUGCCCAGGCGUUGAGCCAUCUGCUUCCUUGGC	chr9:117053000-117053254(+)$1	254	2	42	16.7042
GCUUUUGUGUGUGCGUGCGCAGGCGGGCGGAGGGGGAGGA	chrX:41193667-41193974(+)$1	307	111	151	13.8516
GCCCAAGGUUGGCCAGCCAUCAGCUGGCCUGUCUUCAUCC	chr9:117062826-117063065(+)$1	239	184	224	16.5575
GCUUUGGGGUCUAAGCCGCCGUGGUCAGAGGUCCCGAAGC	chr14:39736575-39736846(+)$1	271	225	265	21.3098

#DB
(((((((...((((..(((...)))...))))..))))))	chr21:46914358-46914565(+)$1	1	104	144	16.5504
((((.((..((((.(((......))).))))..).).)))	chr10:1094606-1094927(-)$1	1	218	258	15.7091
((..((((...((((((.....))).)))...))))..))	chr9:117026537-117026778(+)$1	1	174	214	17.6388
(.(((.(((((((((((....))))))))))).))).)).	chr9:117053054-117053295(+)$1	1	13	53	14.6580
)))))))))((((.(((.....))).)))).(((....))	chr21:46907304-46907523(+)$1	1	73	113	14.1990
((((.(((((((...((.....))...))))))).)))).	chr8:144940431-144940704(-)$1	1	154	194	15.8786
((((.(.((.(((((((.....))))))).)).).)))))	chr9:116999159-116999368(+)$1	1	74	114	16.4747
((((((((((((.((......)).)))...))))))))))	chr21:46908232-46908457(+)$1	1	126	166	15.1060
((.(.(((...((((((.....))))))))).).))).))	chr9:117052426-117052697(+)$1	1	74	114	16.9224
(((.((.(((.((((((.....)))))).))).)).))).	chr14:34931151-34931420(-)$1	1	70	110	15.3796
((((((...((...(((.....)))....))..))))))(	chr9:117053000-117053254(+)$1	1	2	42	16.7042
.(((((.(.(.(((.(((....))).))).).).))))).	chrX:41193667-41193974(+)$1	1	111	151	13.8516
(...((((..(((((((.....)))))))..))))...))	chr9:117062826-117063065(+)$1	1	184	224	16.5575
((((((((((((..(((.....)))...))))))))))))	chr14:39736575-39736846(+)$1	1	225	265	21.3098

#PSSM
= : 0.21	b : 0.21	c : 0.21	f : 0.14	g : 0.07	d : 0.07	! : 0.07	
= : 0.21	b : 0.14	f : 0.14	c : 0.14	g : 0.07	[ : 0.07	d : 0.07	e : 0.07	" : 0.07	
= : 0.21	g : 0.14	c : 0.14	f : 0.14	! : 0.07	d : 0.07	[ : 0.07	e : 0.07	" : 0.07	
= : 0.21	g : 0.14	f : 0.14	! : 0.07	c : 0.07	d : 0.07	a : 0.07	[ : 0.07	e : 0.07	" : 0.07	
[ : 0.28	= : 0.21	d : 0.14	c : 0.07	g : 0.07	b : 0.07	f : 0.07	e : 0.07	
= : 0.21	a : 0.14	d : 0.14	g : 0.14	[ : 0.07	c : 0.07	b : 0.07	f : 0.07	e : 0.07	
= : 0.28	[ : 0.21	d : 0.14	g : 0.14	a : 0.07	c : 0.07	" : 0.07	
= : 0.21	" : 0.14	d : 0.14	g : 0.14	c : 0.14	! : 0.07	b : 0.07	a : 0.07	
" : 0.28	= : 0.21	! : 0.14	g : 0.14	b : 0.07	c : 0.07	[ : 0.07	
" : 0.21	d : 0.14	= : 0.14	c : 0.14	g : 0.07	[ : 0.07	b : 0.07	a : 0.07	! : 0.07	
d : 0.21	g : 0.21	" : 0.14	= : 0.14	[ : 0.14	c : 0.07	b : 0.07	
d : 0.21	c : 0.21	g : 0.21	= : 0.14	f : 0.14	" : 0.07	
d : 0.21	c : 0.14	" : 0.14	g : 0.14	f : 0.14	= : 0.07	[ : 0.07	! : 0.07	
[ : 0.14	c : 0.14	" : 0.14	g : 0.14	f : 0.14	d : 0.07	= : 0.07	b : 0.07	! : 0.07	
c : 0.35	g : 0.14	f : 0.14	! : 0.07	= : 0.07	" : 0.07	b : 0.07	[ : 0.07	
c : 0.42	g : 0.14	f : 0.14	! : 0.07	= : 0.07	b : 0.07	o : 0.07	
c : 0.49	g : 0.14	f : 0.14	= : 0.07	b : 0.07	o : 0.07	
n : 0.64	c : 0.14	o : 0.14	m : 0.07	
n : 0.64	o : 0.14	m : 0.14	c : 0.07	
n : 0.64	o : 0.14	m : 0.14	l : 0.07	
n : 0.64	o : 0.14	m : 0.14	l : 0.07	
n : 0.64	l : 0.07	o : 0.07	= : 0.07	b : 0.07	m : 0.07	
c : 0.42	b : 0.14	g : 0.14	f : 0.14	o : 0.07	= : 0.07	
c : 0.49	g : 0.14	f : 0.14	= : 0.07	b : 0.07	] : 0.07	
c : 0.57	g : 0.14	f : 0.14	= : 0.07	3 : 0.07	
3 : 0.21	] : 0.21	c : 0.14	g : 0.14	f : 0.14	= : 0.07	4 : 0.07	
3 : 0.21	c : 0.21	g : 0.14	f : 0.14	] : 0.07	= : 0.07	d : 0.07	4 : 0.07	
3 : 0.21	g : 0.21	d : 0.14	c : 0.14	f : 0.14	= : 0.07	4 : 0.07	
d : 0.21	c : 0.21	g : 0.21	= : 0.14	3 : 0.07	] : 0.07	4 : 0.07	
d : 0.21	3 : 0.14	= : 0.14	] : 0.14	c : 0.14	g : 0.07	b : 0.07	2 : 0.07	
= : 0.21	d : 0.14	b : 0.14	c : 0.14	3 : 0.07	: : 0.07	g : 0.07	a : 0.07	2 : 0.07	
= : 0.21	d : 0.14	2 : 0.14	c : 0.14	] : 0.14	3 : 0.07	g : 0.07	b : 0.07	
2 : 0.21	] : 0.21	d : 0.14	= : 0.14	a : 0.14	c : 0.07	g : 0.07	
a : 0.14	d : 0.14	c : 0.14	= : 0.14	] : 0.14	2 : 0.07	g : 0.07	b : 0.07	f : 0.07	
= : 0.21	] : 0.21	d : 0.14	c : 0.14	m : 0.07	b : 0.07	f : 0.07	e : 0.07	
= : 0.21	d : 0.14	c : 0.14	f : 0.14	a : 0.07	m : 0.07	] : 0.07	e : 0.07	3 : 0.07	
= : 0.21	] : 0.14	f : 0.14	c : 0.14	2 : 0.07	m : 0.07	d : 0.07	e : 0.07	3 : 0.07	
= : 0.21	f : 0.14	g : 0.07	2 : 0.07	b : 0.07	m : 0.07	d : 0.07	] : 0.07	c : 0.07	e : 0.07	3 : 0.07	
= : 0.21	c : 0.21	b : 0.14	d : 0.14	f : 0.14	g : 0.07	e : 0.07	
= : 0.21	] : 0.14	c : 0.14	2 : 0.14	g : 0.07	b : 0.07	f : 0.07	d : 0.07	G : 0.07	

#score	226.9403708604786
#seq	14
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_CDS_m3_run1.txt

#BEAR
A}FFFFFF}FFFFFF}BB}CCC	chr15:89865094-89865345(-)$1	251	167	189	13.0094
:FFFFFFCCC~~~~CCC}CCC:	chr11:61081511-61081741(-)$1	230	137	159	12.2324
::FFFFFF}DDDDAYYBBCCC}	chr9:35719985-35720203(-)$1	218	184	206	13.0603
FFFFFFCCC}DDDDCCC}CCCZ	chr1:155920826-155921106(-)$1	280	241	263	11.3115
:FFFFFFZZZEEEEE}A}FFFF	chr6:31593830-31594038(+)$1	208	92	114	11.4574
BB}EEEEE}EEEEE~~~~CCCZ	chr8:145001671-145001925(-)$1	254	218	240	13.7942
YYHHHHHHHH}CCCCCCBB}BB	chr17:78316909-78317174(+)$1	265	202	224	10.5303
::FFFFFFZZZEEEEEYYEEEE	chr21:34925523-34925786(+)$1	263	200	222	13.1682
ZZGGGGGGG}EEEEE}CCC}CC	chr1:19481424-19481664(-)$1	240	154	176	12.2924
YBBYYEEEEEZZZDDDD}CCC}	chrX:117629871-117630142(+)$1	271	214	236	9.9534
E}FFFFFF}CCCYYBBYYBB}B	chr7:2394740-2394994(+)$1	254	179	201	14.4247
}IIIIIIIII~~~~CCC}CCC}	chr19:10789697-10789951(+)$1	254	212	234	12.1527
BYYFFFFFFZZZCCCYYDDDD}	chr8:144992845-144993102(-)$1	257	63	85	11.8782
BB}HHHHHHHHEEEEEYYDDDD	chr2:242174513-242174763(-)$1	250	227	249	10.6205
BB}GGGGGGGYYDDDD~~~~A}	chr3:36873004-36873245(-)$1	241	211	233	11.0641
YYFFFFFF}FFFFFF}CCC:::	chr9:35711493-35711711(-)$1	218	177	199	11.6878
BBFFFFFFZZZEEEEE}BBYYG	chr3:58135778-58136031(+)$1	253	208	230	13.3149
:::EEEEE}BBYYCCCAEEEEE	chrX:153582937-153583170(-)$1	233	105	127	9.9696
::FFFFFF~~~~CCC}A}DDDD	chr12:6710374-6710650(-)$1	276	201	223	12.0131
DDDFFFFFFYYBB}CCC}CCC@	chr1:160309609-160309834(-)$1	225	179	201	11.9189
~~~EEEEE}EEEEE}CCC}BB}	chr12:120589058-120589292(-)$1	234	177	199	12.2211
::FFFFFFYYA}EEEEE::::H	chr8:48694939-48695217(-)$1	278	167	189	10.7680
i:FFFFFF}CCC}BBYYCCC}B	chr1:193028649-193028930(+)$1	281	226	248	11.6590
HHHHHHHH}EEEEEYYEEEEE}	chr12:133373084-133373346(-)$1	262	134	156	12.1195
ZZFFFFFF}EEEEECCC}CCC}	chr11:61094216-61094466(-)$1	250	213	235	15.5235
ZZFFFFFF}DDDDYYCCC____	chr19:17837564-17837818(+)$1	254	226	248	13.4959
}FFFFFF}DDDDYYCCC}DDDD	chr11:122929672-122929893(-)$1	221	195	217	11.7625
}FFFFFF}CCC}EEEEE}ACCC	chr22:19967188-19967464(-)$1	276	190	212	12.8328
@@FFFFFF}A}EEEEE}A::::	chr17:1562568-1562803(-)$1	235	211	233	11.8492
::FFFFFFZZZEEEEE}DDDDc	chr9:133759256-133759487(+)$1	231	146	168	11.3597
A}CCC}BB}EEEEE~~~~CCC}	chr12:6715393-6715659(-)$1	266	161	183	12.3151
C}FFFFFF}CCC}DDDDYYEEE	chr3:47887146-47887421(+)$1	275	213	235	12.7071
::IIIIIIIII}DDDDYYCCCB	chr10:43883054-43883295(-)$1	241	109	131	10.1320
e:FFFFFFYYCCC}CCC}DDDD	chrX:54068961-54069295(-)$1	334	230	252	10.8056
ZZGGGGGGGYYBBYYBBCCC::	chr6:7230687-7230972(+)$1	285	257	279	11.4125
B}GGGGGGG}A}DDDD}BB}EE	chr14:64854959-64855246(+)$1	287	256	278	11.0865
EAFFFFFF}DDDD______DDD	chr9:35707244-35707459(-)$1	215	189	211	12.2238
}AJJJJJJJJJJYYCCCYYEEE	chr1:19473282-19473532(-)$1	250	217	239	10.0128
B}FFFFFFYYDDDD}AEEEEE:	chr22:29736593-29736942(-)$1	349	104	126	12.5806
E}FFFFFF}CCCYYBBYYBB}B	chr7:2394794-2395042(+)$1	248	125	147	14.4247
ZZFFFFFF}EEEEEHHHHHHHH	chr3:184040845-184041068(+)$1	223	200	222	9.7963
YYFFFFFFYYFFFFFFYYBB}B	chr17:7412222-7412475(+)$1	253	224	246	13.1527
HHHH}CCC}EEEEE~~~~EEEE	chr11:62483237-62483481(-)$1	244	113	135	11.2421
A}HHHHHHHH}BBYYBB}BB::	chr1:19536596-19536848(-)$1	252	228	250	10.8497
E}FFFFFFYYBB?????CCCEE	chrX:153586712-153586930(-)$1	218	154	176	11.9644
}A}EEEEE}DDDDEEEEE}BB}	chr11:65347568-65347814(+)$1	246	206	228	11.5265
~~~FFFFFFZZZCCC}A}CCC:	chr7:2416484-2416731(+)$1	247	222	244	11.9594
YGGGGGGG}EEEEE~~~~CCC}	chr8:48800067-48800293(-)$1	226	179	201	13.9099
iGGGGGGG}EEEEE}CCC~~~~	chr17:1578386-1578636(-)$1	250	208	230	11.1822
:FFFFFFYYEEEEE______CC	chr3:47887723-47887970(+)$1	247	117	139	12.8864
D}FFFFFFYYDDDDEEEEE:::	chr8:145624129-145624358(-)$1	229	71	93	11.4666
E}AEEEEE}EEEEE~~~~A}DD	chr19:17837312-17837620(+)$1	308	284	306	12.8966

#otherMatches

#Seq PSSM
GUGGUUGUAGGGAUAGGAGAAC	chr15:89865094-89865345(-)$1	251	167	189	13.0094
UGCCAUUGGCCUCUGGACGGAC	chr11:61081511-61081741(-)$1	230	137	159	12.2324
CACCACGGUGCCAGGGCCCUUC	chr9:35719985-35720203(-)$1	218	184	206	13.0603
CGCUGCCGGCGGCUAGGUGAAG	chr1:155920826-155921106(-)$1	280	241	263	11.3115
UGAUGAUGGUUGGGCAGGUAAG	chr6:31593830-31594038(+)$1	208	92	114	11.4574
GCGUUACUACCGCGAGAGUGCA	chr8:145001671-145001925(-)$1	254	218	240	13.7942
ACGUGACCUCCUCAGUAAGUGC	chr17:78316909-78317174(+)$1	265	202	224	10.5303
UUGUGGCUGAGCCAGACUAUGU	chr21:34925523-34925786(+)$1	263	200	222	13.1682
GAUGUUGUUCUUCAGCUAUUGU	chr1:19481424-19481664(-)$1	240	154	176	12.2924
GCGACGCGGGAAGGGGCAGGAA	chrX:117629871-117630142(+)$1	271	214	236	9.9534
CAGGCGGUGUCCGAGGACGCGG	chr7:2394740-2394994(+)$1	254	179	201	14.4247
AGUCUUUUGGAUAUCCCAGGAA	chr19:10789697-10789951(+)$1	254	212	234	12.1527
GGACCUGUUCGAGGCUCGGAUC	chr8:144992845-144993102(-)$1	257	63	85	11.8782
GGUGAGCAGGAGGUGGCCGGGG	chr2:242174513-242174763(-)$1	250	227	249	10.6205
CUACUUUGCUGAACCUGAGUGU	chr3:36873004-36873245(-)$1	241	211	233	11.0641
AGUUGAGUGACCAGUCCUGACU	chr9:35711493-35711711(-)$1	218	177	199	11.6878
CUUGGCUCCAGCCUUCAGGGCA	chr3:58135778-58136031(+)$1	253	208	230	13.3149
CCAGCCCUCGGUGCAGCCCCCU	chrX:153582937-153583170(-)$1	233	105	127	9.9696
AUGGGGUUCAAAUGGGAGUGGG	chr12:6710374-6710650(-)$1	276	201	223	12.0131
UGGGAAGGUUUGGGAAUCAUGA	chr1:160309609-160309834(-)$1	225	179	201	11.9189
UAUGCAGCAGCUGCUGGAGUCA	chr12:120589058-120589292(-)$1	234	177	199	12.2211
AGCGCGUGGAGCAGCUCUUCCA	chr8:48694939-48695217(-)$1	278	167	189	10.7680
GCGGAUCCAGGGGGUCGGCUGC	chr1:193028649-193028930(+)$1	281	226	248	11.6590
GAGGAGGCUGGAAGAGUUUGAA	chr12:133373084-133373346(-)$1	262	134	156	12.1195
CAGGUUGGUAGGGGGUUUAGGA	chr11:61094216-61094466(-)$1	250	213	235	15.5235
UCUCCCGGACCCAGCCGCGGGA	chr19:17837564-17837818(+)$1	254	226	248	13.4959
augaugauggauuccaaaacca	chr11:122929672-122929893(-)$1	221	195	217	11.7625
UUGUCACUGGUGAGUGGGACCU	chr22:19967188-19967464(-)$1	276	190	212	12.8328
aucccagcacuuugggaggccg	chr17:1562568-1562803(-)$1	235	211	233	11.8492
GAGCGAGGUCCCCCGGAGGGCG	chr9:133759256-133759487(+)$1	231	146	168	11.3597
CAGUGAGGAGGAGGAUAUGGAU	chr12:6715393-6715659(-)$1	266	161	183	12.3151
CCUCACCACCCCUGCUCCCUGU	chr3:47887146-47887421(+)$1	275	213	235	12.7071
AGAGGGCAGGCAGAGUGGUGAG	chr10:43883054-43883295(-)$1	241	109	131	10.1320
AGGUAAGGAGGGCAGGCCAGGC	chrX:54068961-54069295(-)$1	334	230	252	10.8056
CAGGGGCCCCACCCAGCCUCCA	chr6:7230687-7230972(+)$1	285	257	279	11.4125
GGGCUGUGGACGAGGGCUCUGA	chr14:64854959-64855246(+)$1	287	256	278	11.0865
CCUGCCUCCCCUCUCCCCAGGG	chr9:35707244-35707459(-)$1	215	189	211	12.2238
ACUUGGCCUCUGUGGCCGUGGU	chr1:19473282-19473532(-)$1	250	217	239	10.0128
GCGCAGAGAGCCCUGAGACAGC	chr22:29736593-29736942(-)$1	349	104	126	12.5806
CAGGCGGUGUCCGAGGACGCGG	chr7:2394794-2395042(+)$1	248	125	147	14.4247
AAAGUGGCAGGUGGGCAAGGAG	chr3:184040845-184041068(+)$1	223	200	222	9.7963
AUCGGAAGCACAUGACUGACCG	chr17:7412222-7412475(+)$1	253	224	246	13.1527
CAGCAGUACUGGGGGCAGCCUG	chr11:62483237-62483481(-)$1	244	113	135	11.2421
CUCCGCCUUCGAGAUGAAGGAG	chr1:19536596-19536848(-)$1	252	228	250	10.8497
CAGGCUGGAUGCUGAGAACCUG	chrX:153586712-153586930(-)$1	218	154	176	11.9644
ACUCCACCCUCACCUUUAACCU	chr11:65347568-65347814(+)$1	246	206	228	11.5265
CAAGGUCAGCAUGCCCCCACCC	chr7:2416484-2416731(+)$1	247	222	244	11.9594
AGGACUGGUAGGAAAAACGCCU	chr8:48800067-48800293(-)$1	226	179	201	13.9099
UAGCAUGGAAUUGUGUGUGGAG	chr17:1578386-1578636(-)$1	250	208	230	11.1822
GUCUGGCAGGAGGCCCCCCAGC	chr3:47887723-47887970(+)$1	247	117	139	12.8864
AUCACACCCCCACCCCAUCAUC	chr8:145624129-145624358(-)$1	229	71	93	11.4666
GCGAGCCGAGAGCAAAGAGAGC	chr19:17837312-17837620(+)$1	308	284	306	12.8966

#DB
).)))))).)))))).)).)))	chr15:89865094-89865345(-)$1	1	167	189	13.0094
.)))))))))....))).))).	chr11:61081511-61081741(-)$1	1	137	159	12.2324
..)))))).)))))..))))).	chr9:35719985-35720203(-)$1	1	184	206	13.0603
))))))))).))))))).))).	chr1:155920826-155921106(-)$1	1	241	263	11.3115
.))))))...))))).).))))	chr6:31593830-31594038(+)$1	1	92	114	11.4574
)).))))).)))))....))).	chr8:145001671-145001925(-)$1	1	218	240	13.7942
..)))))))).)))))))).))	chr17:78316909-78317174(+)$1	1	202	224	10.5303
..))))))...)))))..))))	chr21:34925523-34925786(+)$1	1	200	222	13.1682
..))))))).))))).))).))	chr1:19481424-19481664(-)$1	1	154	176	12.2924
.))..)))))...)))).))).	chrX:117629871-117630142(+)$1	1	214	236	9.9534
).)))))).)))..))..)).)	chr7:2394740-2394994(+)$1	1	179	201	14.4247
.)))))))))....))).))).	chr19:10789697-10789951(+)$1	1	212	234	12.1527
)..))))))...)))..)))).	chr8:144992845-144993102(-)$1	1	63	85	11.8782
)).)))))))))))))..))))	chr2:242174513-242174763(-)$1	1	227	249	10.6205
)).)))))))..))))....).	chr3:36873004-36873245(-)$1	1	211	233	11.0641
..)))))).)))))).)))...	chr9:35711493-35711711(-)$1	1	177	199	11.6878
))))))))...))))).))..)	chr3:58135778-58136031(+)$1	1	208	230	13.3149
...))))).))..)))))))))	chrX:153582937-153583170(-)$1	1	105	127	9.9696
..))))))....))).).))))	chr12:6710374-6710650(-)$1	1	201	223	12.0131
)))))))))..)).))).))).	chr1:160309609-160309834(-)$1	1	179	201	11.9189
...))))).))))).))).)).	chr12:120589058-120589292(-)$1	1	177	199	12.2211
..))))))..).)))))....(	chr8:48694939-48695217(-)$1	1	167	189	10.7680
).)))))).))).))..))).)	chr1:193028649-193028930(+)$1	1	226	248	11.6590
)))))))).)))))..))))).	chr12:133373084-133373346(-)$1	1	134	156	12.1195
..)))))).)))))))).))).	chr11:61094216-61094466(-)$1	1	213	235	15.5235
..)))))).))))..)))....	chr19:17837564-17837818(+)$1	1	226	248	13.4959
.)))))).))))..))).))))	chr11:122929672-122929893(-)$1	1	195	217	11.7625
.)))))).))).))))).))))	chr22:19967188-19967464(-)$1	1	190	212	12.8328
..)))))).).))))).)....	chr17:1562568-1562803(-)$1	1	211	233	11.8492
..))))))...))))).))))(	chr9:133759256-133759487(+)$1	1	146	168	11.3597
).))).)).)))))....))).	chr12:6715393-6715659(-)$1	1	161	183	12.3151
).)))))).))).))))..)))	chr3:47887146-47887421(+)$1	1	213	235	12.7071
..))))))))).))))..)))(	chr10:43883054-43883295(-)$1	1	109	131	10.1320
).))))))..))).))).))))	chrX:54068961-54069295(-)$1	1	230	252	10.8056
..)))))))..))..)))))..	chr6:7230687-7230972(+)$1	1	257	279	11.4125
).))))))).).)))).)).))	chr14:64854959-64855246(+)$1	1	256	278	11.0865
)))))))).))))......)))	chr9:35707244-35707459(-)$1	1	189	211	12.2238
.)))))))))))..)))..)))	chr1:19473282-19473532(-)$1	1	217	239	10.0128
).))))))..)))).)))))).	chr22:29736593-29736942(-)$1	1	104	126	12.5806
).)))))).)))..))..)).)	chr7:2394794-2395042(+)$1	1	125	147	14.4247
..)))))).)))))))))))))	chr3:184040845-184041068(+)$1	1	200	222	9.7963
..))))))..))))))..)).)	chr17:7412222-7412475(+)$1	1	224	246	13.1527
)))).))).)))))....))))	chr11:62483237-62483481(-)$1	1	113	135	11.2421
).)))))))).))..)).))..	chr1:19536596-19536848(-)$1	1	228	250	10.8497
).))))))..)).....)))))	chrX:153586712-153586930(-)$1	1	154	176	11.9644
.).))))).))))))))).)).	chr11:65347568-65347814(+)$1	1	206	228	11.5265
...))))))...))).).))).	chr7:2416484-2416731(+)$1	1	222	244	11.9594
.))))))).)))))....))).	chr8:48800067-48800293(-)$1	1	179	201	13.9099
)))))))).))))).)))....	chr17:1578386-1578636(-)$1	1	208	230	11.1822
.))))))..)))))......))	chr3:47887723-47887970(+)$1	1	117	139	12.8864
).))))))..))))(((((...	chr8:145624129-145624358(-)$1	1	71	93	11.4666
).)))))).)))))....).))	chr19:17837312-17837620(+)$1	1	284	306	12.8966

#PSSM
: : 0.19	B : 0.13	Y : 0.09	Z : 0.09	E : 0.09	} : 0.09	A : 0.05	D : 0.03	~ : 0.03	i : 0.03	H : 0.03	F : 0.01	@ : 0.01	C : 0.01	e : 0.01	
} : 0.21	: : 0.17	F : 0.11	B : 0.09	Z : 0.09	Y : 0.07	A : 0.05	~ : 0.03	H : 0.03	G : 0.03	I : 0.01	D : 0.01	@ : 0.01	
F : 0.53	G : 0.09	} : 0.07	H : 0.07	I : 0.03	~ : 0.03	B : 0.01	Y : 0.01	: : 0.01	D : 0.01	C : 0.01	J : 0.01	A : 0.01	
F : 0.59	G : 0.11	E : 0.09	H : 0.09	I : 0.03	Y : 0.01	C : 0.01	J : 0.01	
F : 0.59	G : 0.11	E : 0.09	H : 0.07	I : 0.03	Y : 0.01	C : 0.01	J : 0.01	} : 0.01	
F : 0.59	E : 0.11	G : 0.11	H : 0.07	I : 0.03	} : 0.01	J : 0.01	C : 0.01	
F : 0.57	E : 0.11	G : 0.11	H : 0.07	C : 0.03	I : 0.03	B : 0.01	J : 0.01	
F : 0.48	E : 0.11	G : 0.11	H : 0.07	C : 0.05	I : 0.03	} : 0.03	Z : 0.01	B : 0.01	J : 0.01	Y : 0.01	
} : 0.42	Y : 0.13	Z : 0.07	G : 0.07	C : 0.05	H : 0.05	F : 0.05	I : 0.03	E : 0.01	~ : 0.01	D : 0.01	J : 0.01	
E : 0.23	Y : 0.15	C : 0.11	Z : 0.11	D : 0.09	} : 0.05	H : 0.05	F : 0.03	I : 0.03	G : 0.01	B : 0.01	~ : 0.01	A : 0.01	J : 0.01	
E : 0.24	D : 0.15	Z : 0.11	C : 0.11	F : 0.05	~ : 0.05	} : 0.05	Y : 0.05	B : 0.03	A : 0.03	H : 0.01	I : 0.01	J : 0.01	
E : 0.34	D : 0.15	C : 0.11	B : 0.07	} : 0.07	F : 0.05	~ : 0.05	Z : 0.05	Y : 0.03	J : 0.01	
E : 0.38	D : 0.19	C : 0.09	Y : 0.09	F : 0.05	B : 0.05	~ : 0.03	} : 0.03	Z : 0.01	? : 0.01	
E : 0.40	D : 0.15	Y : 0.13	C : 0.09	F : 0.05	~ : 0.03	} : 0.03	A : 0.01	B : 0.01	_ : 0.01	? : 0.01	
C : 0.24	E : 0.21	Y : 0.09	~ : 0.09	D : 0.09	F : 0.05	B : 0.05	} : 0.05	_ : 0.03	H : 0.01	? : 0.01	
C : 0.24	E : 0.17	} : 0.11	~ : 0.09	D : 0.09	Y : 0.07	B : 0.07	_ : 0.03	A : 0.01	H : 0.01	F : 0.01	? : 0.01	
C : 0.26	Y : 0.15	~ : 0.11	E : 0.11	B : 0.07	A : 0.07	} : 0.07	D : 0.03	_ : 0.03	H : 0.01	? : 0.01	
} : 0.24	Y : 0.15	C : 0.15	~ : 0.11	B : 0.09	E : 0.09	D : 0.03	_ : 0.03	: : 0.01	A : 0.01	H : 0.01	
C : 0.32	B : 0.13	E : 0.11	D : 0.11	} : 0.05	_ : 0.05	~ : 0.03	: : 0.03	A : 0.03	Y : 0.03	F : 0.01	H : 0.01	
C : 0.32	E : 0.13	D : 0.13	B : 0.11	} : 0.07	: : 0.07	~ : 0.03	_ : 0.03	F : 0.01	Y : 0.01	H : 0.01	
C : 0.30	E : 0.17	D : 0.15	: : 0.11	} : 0.07	B : 0.05	F : 0.01	A : 0.01	Y : 0.01	_ : 0.01	H : 0.01	~ : 0.01	
} : 0.21	: : 0.15	E : 0.13	B : 0.11	D : 0.11	C : 0.07	Z : 0.03	H : 0.03	F : 0.01	G : 0.01	@ : 0.01	_ : 0.01	c : 0.01	~ : 0.01	

#score	623.9816708997771
#seq	52
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_CDS_m3_run1.txt

#BEAR
bb[cccooooooccc]	chr19:803389-803662(+)$1	273	225	241	9.4794
:eeeeeooooooeeee	chr19:2270411-2270656(+)$1	245	6	22	8.7702
b[ddddoooooodddd	chr19:10407088-10407332(+)$1	244	146	162	11.9104
eeeeeeooooooeeee	chr4:78740041-78740317(-)$1	276	211	227	9.1948
ccccccooooooccc:	chr17:80543629-80543895(+)$1	266	155	171	8.3437
==ddddoooooodddd	chr1:22155427-22155672(-)$1	245	164	180	11.4588
::ddddoooooodddd	chr12:112036737-112037003(-)$1	266	168	184	10.0060
b[ddddnnnnndddd]	chr16:28878127-28878395(+)$1	268	165	181	9.4963
b[ddddnnnnndddd]	chr22:50016658-50016910(-)$1	252	188	204	9.4963
!eeeeeooooooeeee	chr19:18547567-18547863(-)$1	296	252	268	9.3189
bbddddnnnnndddd]	chrX:152954046-152954287(+)$1	241	154	170	9.0546
ddddbboooooobb]d	chr11:5275532-5275800(-)$1	268	238	254	8.4446
bb[cccooooooccc2	chrM:14216-14450(-)$1	234	88	104	9.3564
d[ddddnnnnndddd2	chr1:22155775-22156000(-)$1	225	178	194	9.1080
b[ddddoooooodddd	chr22:50018397-50018654(-)$1	257	43	59	11.9104
dddd[aooooooa]dd	chr11:63743596-63743845(+)$1	249	197	213	9.6922
!!ddddoooooodddd	chr6:31601552-31601835(+)$1	283	233	249	11.6010
eeddddoooooodddd	chr21:38119978-38120204(+)$1	226	45	61	11.2464
d[ddddnnnnndddd2	chr1:22155800-22156052(-)$1	252	230	246	9.1080

#otherMatches

#Seq PSSM
AGCAGCAACUCGGCUU	chr19:803389-803662(+)$1	273	225	241	9.4794
UUUCGCCCCUGAGCGA	chr19:2270411-2270656(+)$1	245	6	22	8.7702
cgcggccgAGUCGCCG	chr19:10407088-10407332(+)$1	244	146	162	11.9104
CCGGCCGGGGAGGGCU	chr4:78740041-78740317(-)$1	276	211	227	9.1948
CCUCUGUCCAGUCAGC	chr17:80543629-80543895(+)$1	266	155	171	8.3437
GCGUCUCAACAAGGAC	chr1:22155427-22155672(-)$1	245	164	180	11.4588
UCGCUGAAGCCCcagc	chr12:112036737-112037003(-)$1	266	168	184	10.0060
UGCUUCGAAGUGAAGG	chr16:28878127-28878395(+)$1	268	165	181	9.4963
GGUCAGGACAACUGGG	chr22:50016658-50016910(-)$1	252	188	204	9.4963
ACUGUGGCCGCACAUG	chr19:18547567-18547863(-)$1	296	252	268	9.3189
CAGAUGGACUUCAUCA	chrX:152954046-152954287(+)$1	241	154	170	9.0546
UGCACUGUGACAAGCU	chr11:5275532-5275800(-)$1	268	238	254	8.4446
UGGGUGAAAGAGUAUG	chrM:14216-14450(-)$1	234	88	104	9.3564
UCGGCUCUUCAAGCCC	chr1:22155775-22156000(-)$1	225	178	194	9.1080
GUGGCAGCUUUGUGCU	chr22:50018397-50018654(-)$1	257	43	59	11.9104
GGGGUCCGUUCUGUCC	chr11:63743596-63743845(+)$1	249	197	213	9.6922
UUGUGCUUCACUGCAC	chr6:31601552-31601835(+)$1	283	233	249	11.6010
CUGCGGCCACUACCGC	chr21:38119978-38120204(+)$1	226	45	61	11.2464
UCGGCUCUUCAAGCCC	chr1:22155800-22156052(-)$1	252	230	246	9.1080

#DB
((.(((......))).	chr19:803389-803662(+)$1	1	225	241	9.4794
.(((((......))))	chr19:2270411-2270656(+)$1	1	6	22	8.7702
(.((((......))))	chr19:10407088-10407332(+)$1	1	146	162	11.9104
)(((((......))))	chr4:78740041-78740317(-)$1	1	211	227	9.1948
)))(((......))).	chr17:80543629-80543895(+)$1	1	155	171	8.3437
))((((......))))	chr1:22155427-22155672(-)$1	1	164	180	11.4588
..((((......))))	chr12:112036737-112037003(-)$1	1	168	184	10.0060
(.((((.....)))).	chr16:28878127-28878395(+)$1	1	165	181	9.4963
(.((((.....)))).	chr22:50016658-50016910(-)$1	1	188	204	9.4963
.(((((......))))	chr19:18547567-18547863(-)$1	1	252	268	9.3189
((((((.....)))).	chrX:152954046-152954287(+)$1	1	154	170	9.0546
((((((......)).)	chr11:5275532-5275800(-)$1	1	238	254	8.4446
((.(((......))).	chrM:14216-14450(-)$1	1	88	104	9.3564
(.((((.....)))).	chr1:22155775-22156000(-)$1	1	178	194	9.1080
(.((((......))))	chr22:50018397-50018654(-)$1	1	43	59	11.9104
((((.(......).))	chr11:63743596-63743845(+)$1	1	197	213	9.6922
..((((......))))	chr6:31601552-31601835(+)$1	1	233	249	11.6010
))((((......))))	chr21:38119978-38120204(+)$1	1	45	61	11.2464
(.((((.....)))).	chr1:22155800-22156052(-)$1	1	230	246	9.1080

#PSSM
b : 0.36	d : 0.21	: : 0.10	e : 0.10	! : 0.10	c : 0.05	= : 0.05	
[ : 0.31	e : 0.21	b : 0.15	d : 0.10	c : 0.05	= : 0.05	: : 0.05	! : 0.05	
d : 0.68	e : 0.15	[ : 0.10	c : 0.05	
d : 0.68	c : 0.15	e : 0.15	
d : 0.57	c : 0.15	e : 0.15	b : 0.05	[ : 0.05	
d : 0.57	c : 0.15	e : 0.15	b : 0.05	a : 0.05	
o : 0.73	n : 0.26	
o : 0.73	n : 0.26	
o : 0.73	n : 0.26	
o : 0.73	n : 0.26	
o : 0.73	n : 0.26	
o : 0.73	d : 0.26	
d : 0.57	c : 0.15	e : 0.15	b : 0.05	a : 0.05	
d : 0.57	c : 0.15	e : 0.15	b : 0.05	] : 0.05	
d : 0.63	c : 0.15	e : 0.15	] : 0.05	
d : 0.42	] : 0.21	e : 0.15	2 : 0.15	: : 0.05	

#score	186.99743409591582
#seq	19
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_CDS_m3_run2.txt

#BEAR
[ccceeeeeooooooeeeee333	chr1:153912135-153912458(-)$1	323	42	65	12.9871
ddd[eeeeeooooooeeeee]dd	chr11:67048966-67049237(+)$1	271	243	266	11.9681
eeeee[cccooooooccceeeee	chr22:32003766-32004050(+)$1	284	79	102	11.4787
fbb[eeeeeooooooeeeee22b	chr19:1270991-1271237(+)$1	246	138	161	11.5443
=========oooooo========	chr17:25638423-25638683(+)$1	260	105	128	13.5707
c!!aeeeeeooooooeeeee666	chr20:62337970-62338211(-)$1	241	130	153	11.7367
c!!ffffffooooooffffff22	chr2:218700749-218701044(-)$1	295	4	27	11.5425
============lll========	chr22:50873257-50873565(+)$1	308	121	144	9.6162
"eeeee!!aooooooa22eeeee	chr16:30078122-30078339(+)$1	217	116	139	10.8436
+dddd[cccoooooocccddddb	chr12:110974763-110975028(-)$1	265	167	190	10.2627
:bbffffffooooooffffff]b	chr16:4664675-4664938(-)$1	263	135	158	9.6076
==========mmmm=========	chr10:1046729-1047022(+)$1	293	121	144	8.9587
==========nnnnn========	chr2:85770656-85770915(+)$1	259	93	116	9.7211
=========rrrrrrrrr=====	chr19:15367868-15368141(-)$1	273	137	160	8.4669
ffa[eeeeeooooooeeeee]a6	chr17:42457867-42458185(-)$1	318	190	213	12.1289
####eeeeeooooooeeeee333	chr9:35704047-35704329(-)$1	282	225	248	13.2856
$$$$eeeeeooooooeeeee]dd	chr11:62549992-62550275(+)$1	283	24	47	11.8011
!!ccc[cccooooooccc]ccc]	chr1:228295450-228295707(-)$1	257	47	70	12.4749
iiiiiiiiinnnnniiiiiiiii	chr1:27105410-27105647(+)$1	237	18	41	8.9843
ccc[eeeeeooooooeeeeeccc	chr1:201843196-201843494(+)$1	298	241	264	12.3566
=========oooooo========	chr2:220369771-220370087(+)$1	316	14	37	13.5707
dddd!!cccoooooocccdddd6	chr6:160204963-160205244(-)$1	281	225	248	10.8504
fffffddddoooooodddd22ff	chr17:61886776-61887060(+)$1	284	15	38	9.6635
ccc[eeeeeooooooeeeeeccc	chr17:35550239-35550498(-)$1	259	182	205	12.3566
gg[dddd[aooooooa]ddddgg	chr1:155650066-155650322(-)$1	256	206	229	10.9396
###ffffffooooooffffffdd	chr10:70516927-70517177(+)$1	250	21	44	11.2752
gggffffffooooooffffff::	chr7:128036641-128036921(-)$1	280	254	277	9.5289
b!!ccccccooooooccc]ccc2	chr17:80223533-80223781(-)$1	248	181	204	12.1706
""gggggggnnnnnggggggg33	chr9:35718794-35719058(-)$1	264	82	105	8.9949
f!!gggggggnnnnnggggggg4	chr13:45911543-45911753(-)$1	210	27	50	8.7162
dd[ccc[bboooooobb]ccc]d	chr19:14521035-14521313(-)$1	278	251	274	10.8718
####eeeeeooooooeeeee>>>	chr17:7123938-7124188(+)$1	250	142	165	12.3472
iiiiiiiiinnnnniiiiiiiii	chr4:1804557-1804792(+)$1	235	189	212	8.9843
dddd"""bboooooobb333ddd	chr1:153948254-153948536(-)$1	282	17	40	9.7876
ee[abb[bboooooobb]bb]a]	chr1:35900548-35900842(-)$1	294	252	275	10.0126
%%%ffffffooooooffffff33	chr11:66133906-66134214(-)$1	308	135	158	10.0968
iiiiiiiiiooooooiiiiiiii	chr20:60899147-60899479(-)$1	332	65	88	12.9451
e"""eeeeeooooooeeeee555	chr5:6611047-6611350(-)$1	303	188	211	10.7907
=========mmmm==========	chr19:1271400-1271667(+)$1	267	132	155	8.8841
ddgggggggooooooggggggg:	chr16:2163184-2163442(-)$1	258	180	203	11.4267
"a[ccc[bboooooobbccc]a3	chr1:43308044-43308329(+)$1	285	137	160	11.7312
[hhhhhhhhoooooohhhhhhhh	chr19:54677972-54678269(-)$1	297	100	123	9.3213
EEgggggggoooooogggggggb	chr1:171557364-171557656(+)$1	292	66	89	10.1452
ee[ccccccooooooccc]ccce	chr4:1359969-1360239(+)$1	270	116	139	11.8519
dddd[ddddoooooodddd]ddd	chr1:145441070-145441316(+)$1	246	68	91	9.9561
gggg!!cccoooooocccggggg	chr11:9166522-9166814(-)$1	292	146	169	12.3489
]ccceeeeeooooooeeeee:FF	chr22:22042856-22043132(+)$1	276	59	82	10.0863
fff[eeeeeooooooeeeee22f	chrX:153928208-153928500(-)$1	292	196	219	11.7986
eeee!!cccooooooccc]eeee	chr12:122619634-122619910(+)$1	276	196	219	11.4139
b!!ccccccooooooccc]ccc2	chr19:798422-798686(+)$1	264	76	99	12.1706

#otherMatches

#Seq PSSM
UAGUUGAAGGUAAUACUUUAGUU	chr1:153912135-153912458(-)$1	323	42	65	12.9871
GCCGGGCCCUAGGGUGGGCCGGG	chr11:67048966-67049237(+)$1	271	243	266	11.9681
CCACCGUCACAGACCUGGGGUGG	chr22:32003766-32004050(+)$1	284	79	102	11.4787
CCUGCACAGUGGUGGUUGUGAAA	chr19:1270991-1271237(+)$1	246	138	161	11.5443
UUUCAGAAUGGUGAGGUUCUGGA	chr17:25638423-25638683(+)$1	260	105	128	13.5707
GAGCAGUCGAAAACCCGAUUUAA	chr20:62337970-62338211(-)$1	241	130	153	11.7367
AUGGCCUCUGAGCUAGGAGGCAC	chr2:218700749-218701044(-)$1	295	4	27	11.5425
UGCCUGUUGCUUUCAGGGCAGCG	chr22:50873257-50873565(+)$1	308	121	144	9.6162
AGGGUCCAGCUUCAACAUGACCC	chr16:30078122-30078339(+)$1	217	116	139	10.8436
UGGCUGAGUAUACAGACUAGCUG	chr12:110974763-110975028(-)$1	265	167	190	10.2627
GCGCCAUGUCCGUGAACAUGGAC	chr16:4664675-4664938(-)$1	263	135	158	9.6076
GAGAAUAAUGAUUUCAUUAUUUU	chr10:1046729-1047022(+)$1	293	121	144	8.9587
UAAUUUAAUGCUACAUAUUAAGU	chr2:85770656-85770915(+)$1	259	93	116	9.7211
GCAUGUCUUUCCCUCACCAGGAU	chr19:15367868-15368141(-)$1	273	137	160	8.4669
ACGGGGCCAACCAGGUGGCUGUG	chr17:42457867-42458185(-)$1	318	190	213	12.1289
GGGAGCCAGGAGAAGUUGGCGCA	chr9:35704047-35704329(-)$1	282	225	248	13.2856
cuaggccagucaccccuggcagc	chr11:62549992-62550275(+)$1	283	24	47	11.8011
CCGGCAGUGCCCAAUCACAGCCA	chr1:228295450-228295707(-)$1	257	47	70	12.4749
GACUUGGGGAGGUCUCUCAAGUC	chr1:27105410-27105647(+)$1	237	18	41	8.9843
AGCUCUCCAACGUCAUGGAGGCU	chr1:201843196-201843494(+)$1	298	241	264	12.3566
UGGGAUGUGAGCAGCCACAUCCC	chr2:220369771-220370087(+)$1	316	14	37	13.5707
CAGGUGGUCAUUACAGACCCUGA	chr6:160204963-160205244(-)$1	281	225	248	10.8504
GCUGUUGGACCAGUAUCUAUUAC	chr17:61886776-61887060(+)$1	284	15	38	9.6635
AGGUAAGGAUUGAUUUCUUUCCU	chr17:35550239-35550498(-)$1	259	182	205	12.3566
AGAGGGACUGAACCAAUUCUCCU	chr1:155650066-155650322(-)$1	256	206	229	10.9396
ACAUUUGUGACCUUGCACAGAUC	chr10:70516927-70517177(+)$1	250	21	44	11.2752
CAUCACCCAGGAAGGUGGGUGUC	chr7:128036641-128036921(-)$1	280	254	277	9.5289
ACAUUGAGAGCAAAAUCUACAAG	chr17:80223533-80223781(-)$1	248	181	204	12.1706
GGGCCUGUGAUAUGCACAGGCAU	chr9:35718794-35719058(-)$1	264	82	105	8.9949
CUUGAACAAUUUACUGUUGUUCU	chr13:45911543-45911753(-)$1	210	27	50	8.7162
ACAUCCGGCCUGUGUGCAGGAAG	chr19:14521035-14521313(-)$1	278	251	274	10.8718
GCAGUGCUCAACGAAGAGCAGAC	chr17:7123938-7124188(+)$1	250	142	165	12.3472
UGGCCGAGAAGGCCUUUUGGCUG	chr4:1804557-1804792(+)$1	235	189	212	8.9843
CAGAACUCUUUCAUUAGCUCUCU	chr1:153948254-153948536(-)$1	282	17	40	9.7876
CGAGAGAAGGGCAAACUCCUGCA	chr1:35900548-35900842(-)$1	294	252	275	10.0126
CCUGGGUCACAAGCAUGACCCUU	chr11:66133906-66134214(-)$1	308	135	158	10.0968
UUCCAGGUCAACUGAGGUCUGGG	chr20:60899147-60899479(-)$1	332	65	88	12.9451
GACGCUGUUCCUCACAGCAGACA	chr5:6611047-6611350(-)$1	303	188	211	10.7907
UUUUCCUGUAUGUGCAGGAGGAG	chr19:1271400-1271667(+)$1	267	132	155	8.8841
ACAUGGUCUUCCGGUGGACCAUC	chr16:2163184-2163442(-)$1	258	180	203	11.4267
UUGCAGUGGCAGUGACCCUGGAC	chr1:43308044-43308329(+)$1	285	137	160	11.7312
ggggaccuggacuCGUAGGUCCU	chr19:54677972-54678269(-)$1	297	100	123	9.3213
GAAAAUACCAAGAACGGUGUUUG	chr1:171557364-171557656(+)$1	292	66	89	10.1452
GUAUUGGGGUGUUUUUCCACAGA	chr4:1359969-1360239(+)$1	270	116	139	11.8519
UUUUUGUUCUUACCUGAACUGAA	chr1:145441070-145441316(+)$1	246	68	91	9.9561
UCUAAUAGUGCCAGAACUUGGGG	chr11:9166522-9166814(-)$1	292	146	169	12.3489
GGCUGGGCUCAGCAAGGCCCUGA	chr22:22042856-22043132(+)$1	276	59	82	10.0863
GAGACAAGCGGCUUAGUUUGAAU	chrX:153928208-153928500(-)$1	292	196	219	11.7986
GGAUGUUGGCCUCCACCGUGUCC	chr12:122619634-122619910(+)$1	276	196	219	11.4139
GCGCAGCCCUAGAGUGGGUCUGG	chr19:798422-798686(+)$1	264	76	99	12.1706

#DB
.((((((((......)))))...	chr1:153912135-153912458(-)$1	1	42	65	12.9871
(((.(((((......))))).))	chr11:67048966-67049237(+)$1	1	243	266	11.9681
(((((.(((......))))))))	chr22:32003766-32004050(+)$1	1	79	102	11.4787
(((.(((((......)))))..)	chr19:1270991-1271237(+)$1	1	138	161	11.5443
(((((((((......))))))))	chr17:25638423-25638683(+)$1	1	105	128	13.5707
(..((((((......)))))...	chr20:62337970-62338211(-)$1	1	130	153	11.7367
(..((((((......))))))..	chr2:218700749-218701044(-)$1	1	4	27	11.5425
((((((((((((...))))))))	chr22:50873257-50873565(+)$1	1	121	144	9.6162
.(((((..(......)..)))))	chr16:30078122-30078339(+)$1	1	116	139	10.8436
.((((.(((......))))))))	chr12:110974763-110975028(-)$1	1	167	190	10.2627
.((((((((......)))))).)	chr16:4664675-4664938(-)$1	1	135	158	9.6076
((((((((((....)))))))))	chr10:1046729-1047022(+)$1	1	121	144	8.9587
((((((((((.....))))))))	chr2:85770656-85770915(+)$1	1	93	116	9.7211
(((((((((.........)))))	chr19:15367868-15368141(-)$1	1	137	160	8.4669
(((.(((((......))))).).	chr17:42457867-42458185(-)$1	1	190	213	12.1289
....(((((......)))))...	chr9:35704047-35704329(-)$1	1	225	248	13.2856
....(((((......))))).))	chr11:62549992-62550275(+)$1	1	24	47	11.8011
..(((.(((......))).))).	chr1:228295450-228295707(-)$1	1	47	70	12.4749
(((((((((.....)))))))))	chr1:27105410-27105647(+)$1	1	18	41	8.9843
(((.(((((......))))))))	chr1:201843196-201843494(+)$1	1	241	264	12.3566
(((((((((......))))))))	chr2:220369771-220370087(+)$1	1	14	37	13.5707
((((..(((......))))))).	chr6:160204963-160205244(-)$1	1	225	248	10.8504
(((((((((......))))..))	chr17:61886776-61887060(+)$1	1	15	38	9.6635
(((.(((((......))))))))	chr17:35550239-35550498(-)$1	1	182	205	12.3566
((.((((.(......).))))))	chr1:155650066-155650322(-)$1	1	206	229	10.9396
...((((((......))))))))	chr10:70516927-70517177(+)$1	1	21	44	11.2752
)))((((((......))))))..	chr7:128036641-128036921(-)$1	1	254	277	9.5289
(..((((((......))).))).	chr17:80223533-80223781(-)$1	1	181	204	12.1706
..(((((((.....)))))))..	chr9:35718794-35719058(-)$1	1	82	105	8.9949
(..(((((((.....))))))).	chr13:45911543-45911753(-)$1	1	27	50	8.7162
((.(((.((......)).))).)	chr19:14521035-14521313(-)$1	1	251	274	10.8718
....(((((......)))))...	chr17:7123938-7124188(+)$1	1	142	165	12.3472
(((((((((.....)))))))))	chr4:1804557-1804792(+)$1	1	189	212	8.9843
((((...((......))...)))	chr1:153948254-153948536(-)$1	1	17	40	9.7876
((.(((.((......)).)).).	chr1:35900548-35900842(-)$1	1	252	275	10.0126
...((((((......))))))..	chr11:66133906-66134214(-)$1	1	135	158	10.0968
(((((((((......))))))))	chr20:60899147-60899479(-)$1	1	65	88	12.9451
(...(((((......)))))...	chr5:6611047-6611350(-)$1	1	188	211	10.7907
(((((((((....))))))))))	chr19:1271400-1271667(+)$1	1	132	155	8.8841
))(((((((......))))))).	chr16:2163184-2163442(-)$1	1	180	203	11.4267
.(.(((.((......))))).).	chr1:43308044-43308329(+)$1	1	137	160	11.7312
.((((((((......))))))))	chr19:54677972-54678269(-)$1	1	100	123	9.3213
(((((((((......)))))))(	chr1:171557364-171557656(+)$1	1	66	89	10.1452
((.((((((......))).))))	chr4:1359969-1360239(+)$1	1	116	139	11.8519
((((.((((......)))).)))	chr1:145441070-145441316(+)$1	1	68	91	9.9561
((((..(((......))))))))	chr11:9166522-9166814(-)$1	1	146	169	12.3489
.)))(((((......))))).((	chr22:22042856-22043132(+)$1	1	59	82	10.0863
(((.(((((......)))))..)	chrX:153928208-153928500(-)$1	1	196	219	11.7986
((((..(((......))).))))	chr12:122619634-122619910(+)$1	1	196	219	11.4139
(..((((((......))).))).	chr19:798422-798686(+)$1	1	76	99	12.1706

#PSSM
= : 0.14	d : 0.12	e : 0.10	f : 0.10	c : 0.08	" : 0.06	# : 0.06	i : 0.06	g : 0.06	[ : 0.04	b : 0.04	+ : 0.02	: : 0.02	$ : 0.02	! : 0.02	% : 0.02	E : 0.02	] : 0.02	
d : 0.14	= : 0.14	! : 0.12	e : 0.10	c : 0.08	f : 0.06	# : 0.06	i : 0.06	g : 0.06	b : 0.04	" : 0.04	$ : 0.02	% : 0.02	a : 0.02	h : 0.02	E : 0.02	
= : 0.14	c : 0.10	d : 0.10	! : 0.10	[ : 0.10	g : 0.10	e : 0.06	# : 0.06	i : 0.06	b : 0.04	f : 0.04	a : 0.02	$ : 0.02	% : 0.02	" : 0.02	h : 0.02	
c : 0.16	= : 0.14	[ : 0.12	f : 0.12	d : 0.10	g : 0.10	e : 0.06	i : 0.06	a : 0.04	# : 0.04	$ : 0.02	" : 0.02	h : 0.02	
e : 0.30	= : 0.14	f : 0.12	c : 0.12	g : 0.08	i : 0.06	! : 0.06	d : 0.04	" : 0.02	b : 0.02	h : 0.02	[ : 0.02	
e : 0.27	= : 0.14	f : 0.10	c : 0.10	g : 0.08	[ : 0.06	i : 0.06	! : 0.06	d : 0.06	" : 0.02	b : 0.02	h : 0.02	
e : 0.25	c : 0.18	= : 0.14	f : 0.10	g : 0.08	i : 0.06	d : 0.06	[ : 0.06	! : 0.02	" : 0.02	h : 0.02	
e : 0.25	c : 0.18	= : 0.14	f : 0.10	g : 0.08	b : 0.08	i : 0.06	d : 0.04	! : 0.02	[ : 0.02	h : 0.02	
e : 0.25	c : 0.18	= : 0.14	f : 0.10	g : 0.08	b : 0.08	i : 0.06	a : 0.04	d : 0.04	h : 0.02	
o : 0.82	= : 0.06	n : 0.06	r : 0.02	g : 0.02	m : 0.02	
o : 0.82	n : 0.10	m : 0.04	= : 0.02	r : 0.02	
o : 0.82	n : 0.10	m : 0.04	= : 0.02	r : 0.02	
o : 0.82	n : 0.10	m : 0.04	l : 0.02	r : 0.02	
o : 0.82	n : 0.10	l : 0.02	m : 0.02	r : 0.02	= : 0.02	
o : 0.82	= : 0.04	n : 0.04	i : 0.04	l : 0.02	r : 0.02	g : 0.02	
e : 0.25	c : 0.18	= : 0.12	f : 0.10	g : 0.08	b : 0.08	i : 0.06	a : 0.04	d : 0.04	r : 0.02	h : 0.02	
e : 0.25	c : 0.18	= : 0.12	f : 0.10	g : 0.08	b : 0.08	i : 0.06	d : 0.04	2 : 0.02	r : 0.02	] : 0.02	h : 0.02	
e : 0.25	c : 0.19	= : 0.12	f : 0.10	g : 0.08	i : 0.06	d : 0.06	] : 0.04	2 : 0.02	r : 0.02	3 : 0.02	h : 0.02	
e : 0.30	= : 0.14	f : 0.10	d : 0.10	] : 0.10	g : 0.10	i : 0.06	c : 0.04	3 : 0.02	b : 0.02	h : 0.02	
e : 0.32	= : 0.14	c : 0.12	f : 0.10	g : 0.10	d : 0.06	i : 0.06	2 : 0.02	3 : 0.02	b : 0.02	h : 0.02	] : 0.02	
= : 0.14	c : 0.14	] : 0.10	f : 0.10	d : 0.10	g : 0.10	e : 0.06	2 : 0.06	i : 0.06	3 : 0.04	6 : 0.02	> : 0.02	5 : 0.02	h : 0.02	: : 0.02	
d : 0.14	= : 0.14	c : 0.12	g : 0.10	3 : 0.08	e : 0.06	2 : 0.06	a : 0.06	i : 0.06	] : 0.04	6 : 0.02	f : 0.02	: : 0.02	> : 0.02	5 : 0.02	h : 0.02	F : 0.02	
= : 0.14	d : 0.12	3 : 0.10	e : 0.08	b : 0.08	6 : 0.06	2 : 0.06	i : 0.06	] : 0.04	c : 0.04	f : 0.04	g : 0.04	: : 0.04	4 : 0.02	> : 0.02	5 : 0.02	h : 0.02	F : 0.02	

#score	548.3759532506562
#seq	50
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_UTR_m1_run2.txt

#BEAR
=ggggggg"""ccc!!ccclllccc22ccc333ggggggg	chr7:100276553-100276792(+)$1	239	169	209	13.3314
!bb[ccc####ddddoooooodddd666666cccbb22bb	chr14:69847069-69847339(-)$1	270	54	94	13.3783
ggggggg####ddddoooooodddd4444ggggggg:ddd	chr19:49965727-49966007(+)$1	280	40	80	16.8488
ccc[ccc!!ccc[cccoooooocccccc22ccc]cccddd	chr16:28962230-28962572(+)$1	342	251	291	15.9545
cc####eeeeeddddoooooodddd]eeeee4444ccc22	chr9:123630794-123631138(-)$1	344	172	212	15.6642
[ccc[ccc!!bb!!aooooooa22bbccc]ccc333bb22	chr6:33171592-33171870(+)$1	278	84	124	15.7490
ccc[ccc####cccpppppppccc333cccccc]======	chr5:171710833-171711132(-)$1	299	201	241	13.1140
ccc[dddd[ffffffooooooffffff]ddddccc22ccc	chr22:31722711-31723051(-)$1	340	113	153	13.0492
bb[ccc[hhhhhhhhoooooohhhhhhhh]cccbbggggg	chr12:53421546-53421760(+)$1	214	98	138	12.1607
iiiiiiiiaddddddddmmmmdddd22dddd]a22iiiii	chr2:109335939-109336167(+)$1	228	35	75	12.2114
da[a[ccc"""ddddoooooodddd333ccc]a]a]dddd	chr5:151183433-151183714(+)$1	281	155	195	18.3383
ccc!!dddd!!ddddoooooodddd22dddd]cccccc]a	chr12:53421534-53421746(+)$1	212	95	135	16.7716
""a"""a[ccc[bboooooobb22ccc]a333a]eeeee]	chr2:219139146-219139400(-)$1	254	51	91	14.3737
=========!!ddddqqqqqqqqdddd333==========	chr9:35756797-35757154(+)$1	357	74	114	14.1642
eeee!!ccc!!cccaooooooa]ccc22ccc]eeeee22d	chr1:156712713-156712993(-)$1	280	94	134	15.5541
::ffffff"""ddddoooooodddd22ffffff:ffffff	chr17:30819826-30820093(-)$1	267	145	185	12.8927
cccccc[a[a[ddddoooooodddd]a]a]ccc]ccchhh	chr19:18554137-18554438(-)$1	301	4	44	18.1185
ggggg!!ccc!!cccmmmmccc22ccc]gggggggcccgg	chr12:121124934-121125245(+)$1	311	112	152	12.5575
ddd[bb[a[a[ddddmmmmdddd]a]abb]dddd======	chr17:38078019-38078272(-)$1	253	30	70	11.7595
ccc[ccc[dddd[cccoooooocccdddd]ccc]ccceee	chr17:7076792-7077021(-)$1	229	74	114	14.9450
ccffffffgggggggooooooggggggg333ffffff]cc	chr20:60709721-60709987(+)$1	266	60	100	14.5575
ccciiiiiiiii[aqqqqqqqqa]iiiiiiiii333ccc]	chr17:47130655-47130900(+)$1	245	163	203	12.6418
=========="""aooooooa333==========:bb[cc	chr7:73610703-73610926(+)$1	223	104	144	15.6912
dddccc"""ccc[a!!ammmma22a]ccc22ccc333ddd	chr8:30669813-30670099(-)$1	286	51	91	11.9037
a[eeeee####ddddoooooodddd333eeeee]a22ggg	chr2:241570319-241570620(+)$1	301	26	66	17.0740
=======ccc!!cccmmmmccc22ccc333==========	chr2:128620786-128621102(-)$1	316	187	227	14.1976
ee!!ffffff[ddddoooooodddd]ffffff22eeeee2	chr18:55711508-55711807(+)$1	299	238	278	15.4618
g[a[==========oooooo==========22a]gggggg	chr17:7835449-7835721(+)$1	272	8	48	16.6572
""ccc[bb"""eeeeellleeeee333bb]ccc4444fff	chr3:196304337-196304684(+)$1	347	75	115	12.1802
eee!!ffffffddddoooooodddd22ffffff]eeeeef	chr4:3514515-3514796(-)$1	281	169	209	14.8761
cc[ffffff!!bbcccooooooccc]bb22ffffff]ccc	chr19:42881924-42882234(+)$1	310	266	306	14.1499
a[ggggggg!!ddddmmmmddddggggggg]a22bb]ccc	chr17:56166781-56167032(+)$1	251	26	66	12.5874
==========[eeeeeooooooeeeee]==========44	chr15:64980646-64980911(-)$1	265	85	125	16.3925
"""ffffff!!bb[aooooooa]bb]ffffff22eeeeec	chr22:37904581-37904789(-)$1	208	6	46	14.6946
ccc!!dddd"""cccooooooccc22dddd333cccbb]b	chr2:242707456-242707713(+)$1	257	26	66	15.8639
==========[ddddoooooodddd]=============:	chr16:89980228-89980541(+)$1	313	193	233	18.4464
ddd[dddd"""ccc[aooooooa]ccc22dddd]ddddff	chr8:38848410-38848687(-)$1	277	175	215	14.6002
ccc[iiiiiiiii[aooooooa]iiiiiiiii333ccc]b	chr7:73610452-73610674(+)$1	222	74	114	17.7927
eeeee!!eeeee[bboooooobb22eeeee333eeeeecc	chr2:231742961-231743211(+)$1	250	149	189	12.5714
iiiiiiiii!!bb[bboooooobb]bb]iiiiiiiii]bb	chr11:404648-404927(+)$1	279	193	233	14.3801
iiiiiii####ddddqqqqqqqqdddd333iiiiiiiiic	chr17:36828198-36828514(-)$1	316	120	160	13.4515
ddd!!cccgggggggooooooggggggg]ccc22dddd22	chr1:44088611-44088861(+)$1	250	78	118	14.8068
eeeee[bb[a[cccooooooccca]bb]eeeee333bb]c	chr22:21804703-21804984(+)$1	281	29	69	13.8337
####eeeee!!ddddoooooodddd]eeeee22ffffff2	chr3:53265398-53265640(-)$1	242	185	225	15.4421
[accc[ccc[a[cccnnnnnccc]a]ccc]ccc333a]bb	chr9:140149787-140150115(+)$1	328	188	228	13.4167
"ggggggg[a[cccrrrrrrrrrccca]gggggggiiiii	chr2:75118979-75119218(+)$1	239	194	234	14.2170
============[bboooooobb333============]d	chr17:78093358-78093675(+)$1	317	127	167	17.5935
gggggg[a[bbaddddnnnnndddd]a]bb]a]ggggggg	chr17:617805-618169(-)$1	364	119	159	12.6166
ddddggggggg!!ddddmmmmdddd]ggggggg22ddddg	chr8:28925900-28926187(-)$1	287	196	236	11.4372
cc!!dddd!!cccrrrrrrrrrccc333dddd22ccc]ee	chr2:75118955-75119179(+)$1	224	33	73	13.3107
c####ccc[dddd[aooooooa]dddd22ccc22ccc]a]	chr6:34856979-34857261(+)$1	282	69	109	16.2203
!ccc!!dddd[bbcccooooooccc]bbddddccc22ddd	chr8:38853775-38854106(-)$1	331	127	167	13.5259

#otherMatches

#Seq PSSM
AAAACUGGuuuuauuuuaauuuuuauuauauuuuCAGUUU	chr7:100276553-100276792(+)$1	239	169	209	13.3314
UCGUCGGCAGGCCCAACAGGCUGGGAAAUAAUUGUGUUGG	chr14:69847069-69847339(-)$1	270	54	94	13.3783
AGAUCACCAACUUGCUAGAGUGCAAUGGUGUGAUCUCCUG	chr19:49965727-49966007(+)$1	280	40	80	16.8488
GGUCACCGACAGCGAUGAGGAAAUUCUGGAGGUCGCCACC	chr16:28962230-28962572(+)$1	342	251	291	15.9545
UCGGGGUGGGGCCCGAGGGGGCGGGACCUCAAGGGGAGAA	chr9:123630794-123631138(-)$1	344	172	212	15.6642
AUCUGCCAAAGGAAGGAACUGUAGCCUGGGAGAAUGGUUA	chr6:33171592-33171870(+)$1	278	84	124	15.7490
cugagccgaaggcgagggcggcgcgcgggccaggccugcc	chr5:171710833-171711132(-)$1	299	201	241	13.1140
UUGCGUCAUCUUUAGUAGAUCCUGAGGUUGACCAGCAGCC	chr22:31722711-31723051(-)$1	340	113	153	13.0492
GGAUCGAUAUGGUGGCCGGGAUCGCUAUGAUGACCGAGGC	chr12:53421546-53421760(+)$1	214	98	138	12.1607
GUUUGCAGGCGCUUUCCUCUUGGAAGUGGCGACUGCUGCG	chr2:109335939-109336167(+)$1	228	35	75	12.2114
CCGUGGAGGCAUGGUGCAGAAACCAGGAUUUGGAGUGGGA	chr5:151183433-151183714(+)$1	281	155	195	18.3383
CCCACGCCGGGAUAUGGAUCGAUAUGGUGGCCGGGAUCGC	chr12:53421534-53421746(+)$1	212	95	135	16.7716
UACGUGUGGCCAGGAAGUAGCCAGGGUGAAGAGAGACUCG	chr2:219139146-219139400(-)$1	254	51	91	14.3737
GGCUUCUGGAAAGCUAGAGGCUGGGCUGAGCCAGGAGUCC	chr9:35756797-35757154(+)$1	357	74	114	14.1642
CCCACUCUCCUAGGCAUUCUGGACCUCUGGGUUGGGAUCA	chr1:156712713-156712993(-)$1	280	94	134	15.5541
GAUGGUGCCUUGGGCCCCUUAGCCCCAGCGCCAGGGCCUC	chr17:30819826-30820093(-)$1	267	145	185	12.8927
GCAUCGGGGGGCCACGCAAGUGUGGGUGUGUGAGUGUGCG	chr19:18554137-18554438(-)$1	301	4	44	18.1185
CAGCCGGCCGAGGACGAGGGUCGGCGGGGGCUGCCCCCGU	chr12:121124934-121125245(+)$1	311	112	152	12.5575
CCCACCGUGGGUCCUGGUUGGGAGUGGGGAGGGUCAGGUU	chr17:38078019-38078272(-)$1	253	30	70	11.7595
GGGGUCCGGGAUUGGGAAUCCGCCCAUCUGGGGGCCUCUU	chr17:7076792-7077021(-)$1	229	74	114	14.9450
CACCCUGAUGGCAUCCACAGUGAUGUCAAGGUUGGGGCUG	chr20:60709721-60709987(+)$1	266	60	100	14.5575
GUAGGGAGCCGAGAAAUUGGUCUGUCGGCUCCUGGUUGCA	chr17:47130655-47130900(+)$1	245	163	203	12.6418
UUCCCAUGUGCAGGGUUCAGCAGUUAUGUGGGAGUGCUAG	chr7:73610703-73610926(+)$1	223	104	144	15.6912
ggcggcggagggagaggggagcggcgcccgggccggggcc	chr8:30669813-30670099(-)$1	286	51	91	11.9037
GGUGCUGCCUGCCAGGGGAAGCUGGAACCAGUAGCAAGGA	chr2:241570319-241570620(+)$1	301	26	66	17.0740
GCUGCGGCCCUUCACUGCUGUGCUGGGUUCCUGCAGCCUG	chr2:128620786-128621102(-)$1	316	187	227	14.1976
GCCGGCGCCCGGCCGCUUACCCGGCAGGGCGUGCGCAGGG	chr18:55711508-55711807(+)$1	299	238	278	15.4618
UGAGUGUCUGCGAGCGUGGUCUCGCGGGCGGGUGACGUCA	chr17:7835449-7835721(+)$1	272	8	48	16.6572
CAUUGCUCAGAGCACUGAUGGUGCAAGGACCAAGAUUGGU	chr3:196304337-196304684(+)$1	347	75	115	12.1802
GUGGACAGCCCGCCGUCAGGGUGGCUGGGGCUGGCACGGG	chr4:3514515-3514796(-)$1	281	169	209	14.8761
gggcagacugaggcuugugaggaagaucagagucugguuc	chr19:42881924-42882234(+)$1	310	266	306	14.1499
CCUCUUUCUGUUUAGUUGCCUGGGGGAAGAAGGCUGCUUU	chr17:56166781-56167032(+)$1	251	26	66	12.5874
GGGCUCCUCGCUGUCUAGGGAAGGACACUGAGGGGCUCAG	chr15:64980646-64980911(-)$1	265	85	125	16.3925
UUUGGAGGGCUGAGAGCUGCGUGUCCCCUUCCUUCCCACA	chr22:37904581-37904789(-)$1	208	6	46	14.6946
GGGGACCAGGCACCUGGUUGAAGGGACUGGGAGCCCGCAC	chr2:242707456-242707713(+)$1	257	26	66	15.8639
ugcgcauacguguguggguaaacauuuguaugugcacgcg	chr16:89980228-89980541(+)$1	313	193	233	18.4464
GGACCUAACAAGUUGAGCAAAAUGAAUAUUUGGAUCCAUG	chr8:38848410-38848687(-)$1	277	175	215	14.6002
UGCUGGUGCUGCACUGGGCUGACUGCGGCGCUGACGCAGC	chr7:73610452-73610674(+)$1	222	74	114	17.7927
CCGGCAGCCCAAGGGGAAGGACCGGUUGGGGGAGCCGGGC	chr2:231742961-231743211(+)$1	250	149	189	12.5714
GUUGGCUGUGGCCUGGCAGUAUCUUGGGAUAGCCAGCACU	chr11:404648-404927(+)$1	279	193	233	14.3801
CAGGGCCAGGGGAUUAGGUUUGGGGUCAGAGGUUCUGUUU	chr17:36828198-36828514(-)$1	316	120	160	13.4515
GUCCCCAGCAUUGCAGUAUGGUGUGGUGUUUGUAGGCUGU	chr1:44088611-44088861(+)$1	250	78	118	14.8068
GGCCCUGUGCAGGAGUGCGAUCCGGGCUGGGCCGCUGGGC	chr22:21804703-21804984(+)$1	281	29	69	13.8337
CCCCUCCACAGGAGGACGCACCCUCAGUGGACAUUGCCAA	chr3:53265398-53265640(-)$1	242	185	225	15.4421
GCAGGACCUGGGCGUGGCCAACGGCGAGGACCUGAAGGAG	chr9:140149787-140150115(+)$1	328	188	228	13.4167
GAGCCAAUAGACUGAAGAGACCACAGCAAUUGGCUCCUCC	chr2:75118979-75119218(+)$1	239	194	234	14.2170
AGGUGUGGGGUAUGCACCUGAGCUCCUGCUUCGCGCCUGC	chr17:78093358-78093675(+)$1	317	127	167	17.5935
CAGGUCGCUGCCGCGAGGGAGUUGCUGUGCUGGGGCCUGG	chr17:617805-618169(-)$1	364	119	159	12.6166
AGCAGGUGGAUUUGGGCCCAGGCCCUGUUCACUCUUGCUU	chr8:28925900-28926187(-)$1	287	196	236	11.4372
UUGGCCUCAGUGUAGUUAAAGGGCAGAAGGGGAAGAUACU	chr2:75118955-75119179(+)$1	224	33	73	13.3107
GAAAAGGCAGGGAGGGGGUGGUGUCCCCAGCCGGUUUGGG	chr6:34856979-34857261(+)$1	282	69	109	16.2203
UCCGCUCCUGUGCCCGGGAAGAUGGUGCUAGGUGGUUGCC	chr8:38853775-38854106(-)$1	331	127	167	13.5259

#DB
((((((((...(((..(((...)))..)))...)))))))	chr7:100276553-100276792(+)$1	1	169	209	13.3314
.((.(((....((((......))))......)))))..))	chr14:69847069-69847339(-)$1	1	54	94	13.3783
(((((((....((((......))))....))))))).(((	chr19:49965727-49966007(+)$1	1	40	80	16.8488
(((.(((..(((.(((......))))))..))).)))(((	chr16:28962230-28962572(+)$1	1	251	291	15.9545
((....(((((((((......)))).)))))....)))..	chr9:123630794-123631138(-)$1	1	172	212	15.6642
.(((.(((..((..(......)..))))).)))...))..	chr6:33171592-33171870(+)$1	1	84	124	15.7490
(((.(((....(((.......)))...)))))).))))))	chr5:171710833-171711132(-)$1	1	201	241	13.1140
(((.((((.((((((......)))))).)))))))..)))	chr22:31722711-31723051(-)$1	1	113	153	13.0492
((.(((.((((((((......)))))))).)))))(((((	chr12:53421546-53421760(+)$1	1	98	138	12.1607
(((((((((((((((((....))))..)))).)..)))))	chr2:109335939-109336167(+)$1	1	35	75	12.2114
((.(.(((...((((......))))...))).).).))))	chr5:151183433-151183714(+)$1	1	155	195	18.3383
(((..((((..((((......))))..)))).)))))).)	chr12:53421534-53421746(+)$1	1	95	135	16.7716
..(...(.(((.((......))..))).)...).))))).	chr2:219139146-219139400(-)$1	1	51	91	14.3737
(((((((((..((((........))))...))))))))))	chr9:35756797-35757154(+)$1	1	74	114	14.1642
((((..(((..((((......).)))..))).)))))..)	chr1:156712713-156712993(-)$1	1	94	134	15.5541
..((((((...((((......))))..)))))).((((((	chr17:30819826-30820093(-)$1	1	145	185	12.8927
((((((.(.(.((((......)))).).).))).)))(((	chr19:18554137-18554438(-)$1	1	4	44	18.1185
(((((..(((..(((....)))..))).)))))))(((((	chr12:121124934-121125245(+)$1	1	112	152	12.5575
(((.((.(.(.((((....)))).).))).))))((((((	chr17:38078019-38078272(-)$1	1	30	70	11.7595
(((.(((.((((.(((......))))))).))).)))(((	chr17:7076792-7077021(-)$1	1	74	114	14.9450
(((((((((((((((......)))))))...)))))).))	chr20:60709721-60709987(+)$1	1	60	100	14.5575
((((((((((((.(........).)))))))))...))).	chr17:47130655-47130900(+)$1	1	163	203	12.6418
((((((((((...(......)...)))))))))).((.((	chr7:73610703-73610926(+)$1	1	104	144	15.6912
((((((...(((.(..(....)..).)))..)))...)))	chr8:30669813-30670099(-)$1	1	51	91	11.9037
(.(((((....((((......))))...))))).)..)))	chr2:241570319-241570620(+)$1	1	26	66	17.0740
((((((((((..(((....)))..)))...))))))))))	chr2:128620786-128621102(-)$1	1	187	227	14.1976
((..((((((.((((......)))).))))))..))))).	chr18:55711508-55711807(+)$1	1	238	278	15.4618
(.(.((((((((((......))))))))))..).))))))	chr17:7835449-7835721(+)$1	1	8	48	16.6572
..(((.((...(((((...)))))...)).)))....)))	chr3:196304337-196304684(+)$1	1	75	115	12.1802
(((..((((((((((......))))..)))))).))))))	chr4:3514515-3514796(-)$1	1	169	209	14.8761
((.((((((..(((((......))).))..)))))).)))	chr19:42881924-42882234(+)$1	1	266	306	14.1499
(.(((((((..((((....))))))))))).)..)).)))	chr17:56166781-56167032(+)$1	1	26	66	12.5874
((((((((((.(((((......))))).))))))))))..	chr15:64980646-64980911(-)$1	1	85	125	16.3925
...((((((..((.(......).)).))))))..)))))(	chr22:37904581-37904789(-)$1	1	6	46	14.6946
(((..((((...(((......)))..))))...))))).)	chr2:242707456-242707713(+)$1	1	26	66	15.8639
((((((((((.((((......)))).))))))))))))).	chr16:89980228-89980541(+)$1	1	193	233	18.4464
(((.((((...(((.(......).)))..)))).))))))	chr8:38848410-38848687(-)$1	1	175	215	14.6002
(((.(((((((((.(......).)))))))))...))).)	chr7:73610452-73610674(+)$1	1	74	114	17.7927
(((((..(((((.((......))..)))))...)))))))	chr2:231742961-231743211(+)$1	1	149	189	12.5714
(((((((((..((.((......)).)).))))))))).))	chr11:404648-404927(+)$1	1	193	233	14.3801
(((((((....((((........))))...)))))))))(	chr17:36828198-36828514(-)$1	1	120	160	13.4515
(((..((((((((((......))))))).)))..))))..	chr1:44088611-44088861(+)$1	1	78	118	14.8068
(((((.((.(.(((......)))).)).)))))...)).)	chr22:21804703-21804984(+)$1	1	29	69	13.8337
....(((((..((((......)))).)))))..)))))).	chr3:53265398-53265640(-)$1	1	185	225	15.4421
.((((.(((.(.(((.....))).).))).)))...).))	chr9:140149787-140150115(+)$1	1	188	228	13.4167
.(((((((.(.(((.........)))).))))))))))))	chr2:75118979-75119218(+)$1	1	194	234	14.2170
((((((((((((.((......))...)))))))))))).)	chr17:78093358-78093675(+)$1	1	127	167	17.5935
((((((.(.(((((((.....)))).).)).).)))))))	chr17:617805-618169(-)$1	1	119	159	12.6166
(((((((((((..((((....)))).)))))))..))))(	chr8:28925900-28926187(-)$1	1	196	236	11.4372
((..((((..(((.........)))...))))..))).))	chr2:75118955-75119179(+)$1	1	33	73	13.3107
(....(((.((((.(......).))))..)))..))).).	chr6:34856979-34857261(+)$1	1	69	109	16.2203
.(((..((((.(((((......))).)))))))))..)))	chr8:38853775-38854106(-)$1	1	127	167	13.5259

#PSSM
c : 0.26	= : 0.13	d : 0.11	e : 0.09	g : 0.07	" : 0.07	i : 0.05	! : 0.03	[ : 0.03	a : 0.03	b : 0.01	: : 0.01	# : 0.01	
c : 0.28	= : 0.11	g : 0.09	e : 0.09	d : 0.09	i : 0.05	" : 0.05	[ : 0.05	b : 0.03	a : 0.03	# : 0.03	: : 0.01	
c : 0.24	g : 0.11	= : 0.11	e : 0.09	d : 0.09	# : 0.05	[ : 0.05	i : 0.05	a : 0.03	f : 0.03	! : 0.03	b : 0.01	" : 0.01	
[ : 0.17	c : 0.13	g : 0.11	! : 0.11	= : 0.11	i : 0.07	e : 0.07	f : 0.07	# : 0.05	a : 0.01	" : 0.01	d : 0.01	
c : 0.17	g : 0.13	= : 0.13	! : 0.11	i : 0.09	f : 0.09	e : 0.07	d : 0.05	# : 0.03	[ : 0.03	" : 0.01	b : 0.01	
c : 0.21	= : 0.13	g : 0.11	f : 0.11	d : 0.09	i : 0.09	! : 0.07	[ : 0.05	e : 0.03	# : 0.01	" : 0.01	b : 0.01	
c : 0.19	= : 0.13	d : 0.11	f : 0.11	g : 0.09	i : 0.09	[ : 0.07	e : 0.05	! : 0.03	b : 0.03	a : 0.01	" : 0.01	
c : 0.15	d : 0.11	= : 0.11	f : 0.11	# : 0.09	g : 0.07	i : 0.07	e : 0.05	a : 0.05	[ : 0.03	b : 0.03	! : 0.01	h : 0.01	" : 0.01	
[ : 0.13	" : 0.11	= : 0.11	# : 0.09	c : 0.09	d : 0.07	g : 0.07	f : 0.07	! : 0.05	e : 0.05	i : 0.05	h : 0.01	a : 0.01	
! : 0.19	" : 0.11	# : 0.09	c : 0.09	= : 0.09	d : 0.07	a : 0.07	f : 0.05	g : 0.05	e : 0.03	i : 0.03	h : 0.01	[ : 0.01	b : 0.01	
! : 0.19	[ : 0.15	" : 0.13	# : 0.09	c : 0.07	d : 0.05	g : 0.05	e : 0.03	b : 0.03	f : 0.03	i : 0.03	= : 0.03	h : 0.01	a : 0.01	
d : 0.36	c : 0.17	b : 0.09	! : 0.05	e : 0.05	[ : 0.03	g : 0.03	i : 0.03	" : 0.03	= : 0.03	f : 0.01	h : 0.01	a : 0.01	
d : 0.36	c : 0.21	[ : 0.11	b : 0.09	! : 0.03	g : 0.03	e : 0.03	f : 0.01	h : 0.01	" : 0.01	= : 0.01	i : 0.01	
d : 0.36	c : 0.26	[ : 0.07	b : 0.05	a : 0.05	g : 0.03	e : 0.03	! : 0.01	f : 0.01	h : 0.01	= : 0.01	r : 0.01	
d : 0.36	c : 0.15	a : 0.09	o : 0.07	b : 0.05	! : 0.03	g : 0.03	e : 0.03	r : 0.03	p : 0.01	f : 0.01	h : 0.01	q : 0.01	[ : 0.01	
o : 0.53	c : 0.07	m : 0.07	d : 0.05	q : 0.05	! : 0.03	e : 0.03	r : 0.03	p : 0.01	a : 0.01	b : 0.01	n : 0.01	
o : 0.67	m : 0.07	q : 0.05	d : 0.03	n : 0.03	r : 0.03	c : 0.01	p : 0.01	a : 0.01	l : 0.01	
o : 0.67	m : 0.13	q : 0.05	n : 0.03	r : 0.03	c : 0.01	p : 0.01	l : 0.01	
o : 0.67	m : 0.13	q : 0.05	n : 0.03	r : 0.03	c : 0.01	p : 0.01	l : 0.01	
o : 0.67	m : 0.05	q : 0.05	c : 0.03	d : 0.03	n : 0.03	r : 0.03	l : 0.01	p : 0.01	e : 0.01	
o : 0.59	c : 0.07	m : 0.05	q : 0.05	d : 0.03	r : 0.03	l : 0.01	p : 0.01	b : 0.01	a : 0.01	= : 0.01	e : 0.01	n : 0.01	
d : 0.32	o : 0.13	a : 0.11	c : 0.11	b : 0.05	q : 0.05	g : 0.03	r : 0.03	l : 0.01	f : 0.01	h : 0.01	3 : 0.01	= : 0.01	e : 0.01	
d : 0.32	c : 0.19	2 : 0.09	] : 0.07	b : 0.05	q : 0.03	g : 0.03	a : 0.03	e : 0.03	f : 0.01	h : 0.01	3 : 0.01	= : 0.01	r : 0.01	
d : 0.34	c : 0.19	2 : 0.11	] : 0.07	g : 0.05	3 : 0.03	e : 0.03	b : 0.03	f : 0.01	h : 0.01	= : 0.01	i : 0.01	a : 0.01	
d : 0.34	c : 0.23	3 : 0.05	a : 0.05	g : 0.05	b : 0.03	i : 0.03	= : 0.03	2 : 0.03	] : 0.03	f : 0.01	h : 0.01	e : 0.01	
] : 0.24	c : 0.13	2 : 0.11	3 : 0.11	d : 0.07	b : 0.05	g : 0.05	i : 0.03	= : 0.03	e : 0.03	6 : 0.01	4 : 0.01	f : 0.01	h : 0.01	
c : 0.15	2 : 0.11	3 : 0.09	d : 0.09	e : 0.07	a : 0.07	g : 0.07	= : 0.07	b : 0.07	f : 0.05	i : 0.03	6 : 0.01	4 : 0.01	h : 0.01	
] : 0.17	c : 0.11	3 : 0.11	d : 0.07	f : 0.07	b : 0.07	g : 0.07	= : 0.07	e : 0.05	2 : 0.05	i : 0.03	6 : 0.01	4 : 0.01	h : 0.01	
c : 0.13	d : 0.13	e : 0.09	= : 0.09	2 : 0.07	3 : 0.07	f : 0.07	g : 0.07	b : 0.05	i : 0.05	a : 0.03	6 : 0.01	4 : 0.01	h : 0.01	] : 0.01	
] : 0.13	d : 0.13	c : 0.11	g : 0.09	e : 0.09	3 : 0.09	= : 0.09	f : 0.07	2 : 0.05	i : 0.05	6 : 0.01	b : 0.01	
c : 0.23	d : 0.13	= : 0.11	3 : 0.09	f : 0.09	g : 0.07	e : 0.07	i : 0.07	2 : 0.03	] : 0.03	6 : 0.01	
c : 0.23	= : 0.11	f : 0.11	d : 0.09	3 : 0.07	g : 0.07	] : 0.07	i : 0.07	e : 0.03	2 : 0.03	a : 0.03	4 : 0.01	
c : 0.24	2 : 0.13	= : 0.11	3 : 0.07	g : 0.07	a : 0.07	f : 0.07	e : 0.05	i : 0.05	d : 0.03	4 : 0.01	] : 0.01	
] : 0.19	2 : 0.15	c : 0.11	= : 0.11	g : 0.09	3 : 0.09	f : 0.05	4 : 0.03	e : 0.03	i : 0.03	b : 0.01	: : 0.01	d : 0.01	
c : 0.17	= : 0.13	g : 0.11	3 : 0.11	e : 0.11	f : 0.07	b : 0.05	4 : 0.03	2 : 0.03	a : 0.03	d : 0.03	i : 0.03	: : 0.01	
c : 0.19	= : 0.13	e : 0.11	g : 0.09	3 : 0.09	i : 0.07	f : 0.07	b : 0.05	2 : 0.05	d : 0.05	] : 0.01	4 : 0.01	
c : 0.19	= : 0.13	e : 0.11	g : 0.07	2 : 0.07	b : 0.07	i : 0.07	d : 0.07	f : 0.05	] : 0.03	: : 0.01	3 : 0.01	4 : 0.01	a : 0.01	
d : 0.15	c : 0.15	= : 0.13	e : 0.11	g : 0.09	] : 0.09	b : 0.05	i : 0.05	f : 0.05	2 : 0.03	h : 0.01	[ : 0.01	
c : 0.13	g : 0.11	d : 0.11	e : 0.11	= : 0.09	] : 0.09	2 : 0.07	f : 0.07	b : 0.05	i : 0.05	h : 0.01	4 : 0.01	a : 0.01	
c : 0.17	g : 0.13	d : 0.13	b : 0.09	2 : 0.09	= : 0.07	f : 0.07	] : 0.05	i : 0.03	e : 0.03	a : 0.01	h : 0.01	4 : 0.01	: : 0.01	

#score	757.5314767152056
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_transcript_m2_run2.txt

#BEAR
eeee"""ccc[ccccccooooooccc333cccccc4444e	chr17:20905229-20905508(-)$1	279	60	100	16.6507
ggg"""bb[dddd[bboooooobbdddd]bb22ggggggg	chr4:1810306-1810563(+)$1	257	132	172	13.8453
!eeeee[ffffff[cccoooooocccffffff]eeeee22	chr12:123994574-123994899(-)$1	325	208	248	13.7404
ggggggg####dddd[bboooooobbdddd22ggggggg:	chr1:173836028-173836259(-)$1	231	82	122	13.5194
gggggg[ccc$$$$$bbrrrrrrrrrbbccc]ggggggg4	chr1:145439761-145439974(+)$1	213	137	177	13.1121
gggggg[dddd!!ddddoooooodddddddd]ggggggg:	chr7:150841058-150841425(+)$1	367	186	226	14.8337
ii[===========[bbqqqqqqqqbb]===========7	chr22:49921220-49921482(-)$1	262	23	63	15.0294
dddd[===========ssssssssss===========22d	chr19:1394707-1394954(+)$1	247	37	77	14.5870
cc[a[bb[bb[ffffffooooooffffffbb]bb]a]ccc	chr1:155242902-155243208(-)$1	306	192	232	13.4994
iiiiiiii[bb"""cccooooooccc333bb]iiiiiiii	chr11:60658123-60658380(-)$1	257	62	102	20.3575
ff!!=============oooooo=============]fff	chr8:101715147-101715363(-)$1	216	119	159	19.9476
dd[ggggggg[a[ddddoooooodddda]gggggggdddd	chr5:133707179-133707410(+)$1	231	3	43	16.1623
==========a!!bbbbnnnnnbb]bb22a]=========	chr7:106301373-106301677(-)$1	304	250	290	15.8044
gggggg!!a!!bb[cccmmmmccc]bb22a333ggggggg	chr3:38496131-38496432(+)$1	301	155	195	13.6620
bcccdddd!!gggggggooooooggggggg]dddd]ccc]	chr19:1815443-1815681(-)$1	238	142	182	13.6920
!!ffffff[ccc####cccmmmmccc333ccc]ffffff2	chr10:5499545-5499790(+)$1	245	25	65	12.3364
===========dddd[bboooooobb]dddd]========	chr6:30867331-30867614(+)$1	283	6	46	16.8028
"ffffff[ccc"""bboooooobb]ccc333ffffff333	chr1:116947108-116947395(+)$1	287	49	89	15.0318
:cccccc[a[a[eeeeeooooooeeeee]aa]ccc]cccI	chr2:240287263-240287519(-)$1	256	156	196	12.7514
============!!bbmmmmbb333============444	chr19:14202475-14202763(-)$1	288	104	144	15.3551
iiiiiiii[bb"""cccooooooccc333bb]iiiiiiii	chr11:60658239-60658533(-)$1	294	215	255	20.3575
gggggggccc####ddddllldddd4444ccc22gggggg	chr3:127788652-127788943(+)$1	291	185	225	13.8261
dddccc"""bb[ddddoooooodddd333bb333ccc>>>	chr11:62482338-62482622(-)$1	284	213	253	14.3880
===================mmmm=================	chr19:47774861-47775197(+)$1	336	105	145	17.8464
ff!!=============oooooo=============]fff	chr8:101715134-101715347(-)$1	213	103	143	19.9476
dd"""ffffff!!ddddoooooodddd]ffffff22dddd	chr8:9629600-9629966(+)$1	366	241	281	13.3056
ccc"""==========[ccclllccc]==========ccc	chr1:19665426-19665669(-)$1	243	165	205	16.6546
c[a!!============qqqqqqqq============22a	chr16:28848234-28848484(+)$1	250	39	79	15.5375
d[bb[bb[dddd!!cccoooooocccdddd22bb]bb]dd	chr1:27022727-27022995(+)$1	268	221	261	13.7525
eeggggggg"""ffffffooooooffffff22ggggggg:	chr6:33259636-33259925(-)$1	289	89	129	14.0797
eeeee[===========oooooo===========eeeeed	chr3:47058007-47058289(-)$1	282	64	104	18.4380
===========!!bbrrrrrrrrrbb22============	chr19:55644148-55644425(-)$1	277	179	219	17.1614
[iiiiiiiii####cccooooooccc333iiiiiiiii]d	chr14:70238184-70238419(+)$1	235	163	203	21.0784
::eeeee[ccc"""cccooooooccc4444ccc]eeeee:	chr17:7757318-7757592(+)$1	274	7	47	14.0793
##iiiiiiiiiffffffooooooffffff]iiiiiiiii4	chr3:135868267-135868533(-)$1	266	98	138	16.7221
ccc[ggggggg"""cccmmmmccc333ggggggg]ccc]d	chrX:20284607-20284883(-)$1	276	29	69	14.2457
:iiiiiiiii"""ddddnnnnndddd333iiiiiiiii:G	chr1:245026494-245026705(-)$1	211	158	198	14.1951
=========!!a[cccpppppppccc]a22==========	chr2:97532385-97532596(-)$1	211	21	61	14.9640
[ggggggg[==========mmmm==========22ggggg	chr11:62392342-62392585(-)$1	243	181	221	15.6083
ggggggg"""ccc[aooooooa]ccc333ggggggggggg	chr15:23048563-23048811(-)$1	248	107	147	16.9926
iiiiiiii[a!!cccqqqqqqqqccc333a]iiiiiiiii	chr22:50037558-50037815(-)$1	257	153	193	15.4753
dddd[=============nnnnn=============dddd	chr1:44170917-44171172(+)$1	255	72	112	16.3250
=============!!bboooooobb22=============	chr19:10941847-10942115(+)$1	268	174	214	20.0442
dd[a[bb[dddd[ddddoooooodddd]dddd]bb]a]dd	chr17:80807977-80808370(+)$1	393	235	275	13.3812
dd!!bb[dddd"""cccccclllccc]ccc333dddd]bb	chr4:1983479-1983734(+)$1	255	207	247	12.1696
a[bb[eeeee!!ccc[aooooooa]ccc]eeeee]bba]c	chr16:88782358-88782602(-)$1	244	164	204	14.2612
eeeebb!!bbccc!!aooooooa22ccc]bb22bb]eeee	chr2:219139014-219139307(-)$1	293	187	227	13.0295
:dddd[==========[annnnna]==========dddd:	chr19:46893632-46893914(+)$1	282	240	280	13.7288

#otherMatches

#Seq PSSM
GGUGUGUCUGUCAUCUCAGUCUGGAGUAAAUGCAGUGUCU	chr17:20905229-20905508(-)$1	279	60	100	16.6507
GGCAGCUGUCCCUUGCUUGCCUGCAGGGCCAUGGCUCAGG	chr4:1810306-1810563(+)$1	257	132	172	13.8453
CAAGCGGGGGGCCCGGCUUGGUUGCCGGUUCUGUGCUUAG	chr12:123994574-123994899(-)$1	325	208	248	13.7404
GGUGCUGGGUGCAGAUGCAGUGUGGCUCUGGAUAGCACCU	chr1:173836028-173836259(-)$1	231	82	122	13.5194
GUGGAUGUCAAUACCCCUGAUUUAAUGGUGAGAUCCAUUU	chr1:145439761-145439974(+)$1	213	137	177	13.1121
GGUGCCAUUGAAAAGGGACAGGACCCUUCGGAGGUGCCUG	chr7:150841058-150841425(+)$1	367	186	226	14.8337
cgugucugugcaugugugugcgugugcccaugcgcaggcu	chr22:49921220-49921482(-)$1	262	23	63	15.0294
GCCAGGUGGGGCCUGGCCGCCCUUUCCCAGGCCCUGCAGU	chr19:1394707-1394954(+)$1	247	37	77	14.5870
GCGCACGGGCCUCGCCGCCAGAACGGUGAGCGCGCGGGUU	chr1:155242902-155243208(-)$1	306	192	232	13.4994
CAGUUCCUGUGAGACAGGAGAGGCUGAGCCAAGGGAACUG	chr11:60658123-60658380(-)$1	257	62	102	20.3575
AGAAUGUCAGUUCUGUUUUAAGUAACAGAAUUGAUAACUG	chr8:101715147-101715363(-)$1	216	119	159	19.9476
cggcggcggcggcgAUCCACAGUGAUUcggccgccgcgcc	chr5:133707179-133707410(+)$1	231	3	43	16.1623
GCCGCCGCCGCGGAGCCAACGCGGACUGGGACGGCGGCGG	chr7:106301373-106301677(-)$1	304	250	290	15.8044
GUCCCUCAGAGUCACUAAGUGUAGCGAAGCGAAGGGGGCG	chr3:38496131-38496432(+)$1	301	155	195	13.6620
GGGGCCAGGGCCACACUCAGCGCAGUGUGGGCUGGACCCG	chr19:1815443-1815681(-)$1	238	142	182	13.6920
UUGUAAAGUAGUUUUUAGCAUUUGCUUUUAUUUUUUUACU	chr10:5499545-5499790(+)$1	245	25	65	12.3364
CUCUCCACCCUCCUCUAGCCAUCCCUUGGGGAAGGGUGGG	chr6:30867331-30867614(+)$1	283	6	46	16.8028
ACUCUACCCUGGUAGGAAAGCACCGCAGCAUGUGGGGAAG	chr1:116947108-116947395(+)$1	287	49	89	15.0318
UGGCUUGUGUGUGCAUGUCUGUCCAUGUCCCUCGGUGCCA	chr2:240287263-240287519(-)$1	256	156	196	12.7514
CCCCAUCCCAGGAGGAGUUCUCAGGCCUGGGGUGGGGCCC	chr19:14202475-14202763(-)$1	288	104	144	15.3551
CAGUUCCUGUGAGACAGGAGAGGCUGAGCCAAGGGAACUG	chr11:60658239-60658533(-)$1	294	215	255	20.3575
UGUUUCCCCACAAAGGGAAUUUCUCACUCUGGUUGGAAGC	chr3:127788652-127788943(+)$1	291	185	225	13.8261
CAUUCUGAGGCAGCUGGACUGGCAGCCAAGUAAAGGAGAG	chr11:62482338-62482622(-)$1	284	213	253	14.3880
ugugugugugugugugugugugugcgcgcgcgcgcgcgcg	chr19:47774861-47775197(+)$1	336	105	145	17.8464
AGAAUGUCAGUUCUGUUUUAAGUAACAGAAUUGAUAACUG	chr8:101715134-101715347(-)$1	213	103	143	19.9476
ccaaugagggacagauaggcuuauauuaucucucuaggug	chr8:9629600-9629966(+)$1	366	241	281	13.3056
CAGACUCUCCCGUCCCACGGAGGCCGCGGGGUGGGGGCUG	chr1:19665426-19665669(-)$1	243	165	205	16.6546
GUCCAGCAGGGGUGGGGGGUUCCUGCUCUGCCCCUGCCCG	chr16:28848234-28848484(+)$1	250	39	79	15.5375
CCGCCGCCCUCGGAGCUGAAGAAAGCCGAgcagcagcagc	chr1:27022727-27022995(+)$1	268	221	261	13.7525
CAGAUGUGGGUAGCCAUCCUGAAUGGUGGCAAUUAUAUCA	chr6:33259636-33259925(-)$1	289	89	129	14.0797
AUUAUAUUUUAAUGUAUAUGUGAAUAUAUUGAAAAUAAUU	chr3:47058007-47058289(-)$1	282	64	104	18.4380
GGAGUGUUUGUCCCAUCGGUAGCUUGAAAUAAACGCUCCC	chr19:55644148-55644425(-)$1	277	179	219	17.1614
GUUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAAGC	chr14:70238184-70238419(+)$1	235	163	203	21.0784
CUGUACAUGUCUCUUUAUUCACUUGGUUAUGAUUUGUAUU	chr17:7757318-7757592(+)$1	274	7	47	14.0793
uuuuUUGGUCUCUUUUGGUGGGGUGGGGGUGGGCUAAAGC	chr3:135868267-135868533(-)$1	266	98	138	16.7221
ccgccgccgccgcugccgUGGGGCUCgggcggcgacggag	chrX:20284607-20284883(-)$1	276	29	69	14.2457
UGUCUCGGGGGGAGGGGAGAGGCCCCAGGUCCCGGGGCGG	chr1:245026494-245026705(-)$1	211	158	198	14.1951
GCUCUGCUGGACUCUGAUAGAGGCAGUGGGCAGCAGGGCA	chr2:97532385-97532596(-)$1	211	21	61	14.9640
UGGGGAGUCGGGGAAUAUUUGUGGGUAUUUUUUUUACUUC	chr11:62392342-62392585(-)$1	243	181	221	15.6083
UCUGGUGGAUAGCGGGGAGCAUGGCUCAGCACCAGAGCAG	chr15:23048563-23048811(-)$1	248	107	147	16.9926
UUCCAUGGGUGGAGGGAGGUGAGCCUGAAGGCUGUGGGGC	chr22:50037558-50037815(-)$1	257	153	193	15.4753
GGGUUAAACAGGUUUUUGCUCCUCAAGAAUUUGUUUGCCU	chr1:44170917-44171172(+)$1	255	72	112	16.3250
CCAGCCUGGGGGGGACUCUACCAAGGUCUUCUUGGGCUGG	chr19:10941847-10942115(+)$1	268	174	214	20.0442
gcugugcuguUGUUGGCUGUCCUGUUGUUGGCUGUCCUGU	chr17:80807977-80808370(+)$1	393	235	275	13.3812
UAUUGGUGUCUAAACUUCAUACAAUGUAAGGUCAGAUUCC	chr4:1983479-1983734(+)$1	255	207	247	12.1696
GAGCUGCAGGAGUGCCGGACCGACUGCAACCUGCUGCCCA	chr16:88782358-88782602(-)$1	244	164	204	14.2612
CAGCCACUGCCUUCUUUGUAAUAUUAAGUGCCUUGAGCUG	chr2:219139014-219139307(-)$1	293	187	227	13.0295
CGGGGUGGGGUGGGGCCGAGUGGCUGCCCUGCCCCCCUCA	chr19:46893632-46893914(+)$1	282	240	280	13.7288

#DB
((((...(((.((((((......)))...))))))....)	chr17:20905229-20905508(-)$1	1	60	100	16.6507
(((...((.((((.((......)))))).))..)))))))	chr4:1810306-1810563(+)$1	1	132	172	13.8453
.(((((.((((((.(((......))))))))).)))))..	chr12:123994574-123994899(-)$1	1	208	248	13.7404
(((((((....((((.((......))))))..))))))).	chr1:173836028-173836259(-)$1	1	82	122	13.5194
((((((.(((.....((.........))))).))))))).	chr1:145439761-145439974(+)$1	1	137	177	13.1121
((((((.((((..((((......)))))))).))))))).	chr7:150841058-150841425(+)$1	1	186	226	14.8337
((.(((((((((((.((........)).))))))))))).	chr22:49921220-49921482(-)$1	1	23	63	15.0294
((((.(((((((((((..........)))))))))))..)	chr19:1394707-1394954(+)$1	1	37	77	14.5870
((.(.((.((.((((((......)))))))).)).).)))	chr1:155242902-155243208(-)$1	1	192	232	13.4994
((((((((.((...(((......)))...)).))))))))	chr11:60658123-60658380(-)$1	1	62	102	20.3575
((..(((((((((((((......))))))))))))).)))	chr8:101715147-101715363(-)$1	1	119	159	19.9476
((.(((((((.(.((((......))))).)))))))))))	chr5:133707179-133707410(+)$1	1	3	43	16.1623
(((((((((((..((((.....)).))..).)))))))))	chr7:106301373-106301677(-)$1	1	250	290	15.8044
((((((..(..((.(((....))).))..)...)))))))	chr3:38496131-38496432(+)$1	1	155	195	13.6620
((((((((..(((((((......))))))).)))).))).	chr19:1815443-1815681(-)$1	1	142	182	13.6920
..((((((.(((....(((....)))...))).)))))).	chr10:5499545-5499790(+)$1	1	25	65	12.3364
(((((((((((((((.((......)).)))).))))))))	chr6:30867331-30867614(+)$1	1	6	46	16.8028
.((((((.(((...((......)).)))...))))))...	chr1:116947108-116947395(+)$1	1	49	89	15.0318
.((((((.(.(.(((((......))))).)).))).))))	chr2:240287263-240287519(-)$1	1	156	196	12.7514
((((((((((((..((....))...))))))))))))...	chr19:14202475-14202763(-)$1	1	104	144	15.3551
((((((((.((...(((......)))...)).))))))))	chr11:60658239-60658533(-)$1	1	215	255	20.3575
((((((((((....((((...))))....)))..))))))	chr3:127788652-127788943(+)$1	1	185	225	13.8261
((((((...((.((((......))))...))...)))...	chr11:62482338-62482622(-)$1	1	213	253	14.3880
(((((((((((((((((((....)))))))))))))))))	chr19:47774861-47775197(+)$1	1	105	145	17.8464
((..(((((((((((((......))))))))))))).)))	chr8:101715134-101715347(-)$1	1	103	143	19.9476
((...((((((..((((......)))).))))))..))))	chr8:9629600-9629966(+)$1	1	241	281	13.3056
(((...((((((((((.(((...))).)))))))))))))	chr1:19665426-19665669(-)$1	1	165	205	16.6546
(.(..((((((((((((........))))))))))))..)	chr16:28848234-28848484(+)$1	1	39	79	15.5375
(.((.((.((((..(((......)))))))..)).)).))	chr1:27022727-27022995(+)$1	1	221	261	13.7525
))(((((((...((((((......))))))..))))))).	chr6:33259636-33259925(-)$1	1	89	129	14.0797
(((((.(((((((((((......))))))))))))))))(	chr3:47058007-47058289(-)$1	1	64	104	18.4380
(((((((((((..((.........))..))))))))))))	chr19:55644148-55644425(-)$1	1	179	219	17.1614
.(((((((((....(((......)))...))))))))).)	chr14:70238184-70238419(+)$1	1	163	203	21.0784
..(((((.(((...(((......)))....))).))))).	chr17:7757318-7757592(+)$1	1	7	47	14.0793
..(((((((((((((((......)))))).))))))))).	chr3:135868267-135868533(-)$1	1	98	138	16.7221
(((.(((((((...(((....)))...))))))).))).)	chrX:20284607-20284883(-)$1	1	29	69	14.2457
.(((((((((...((((.....))))...))))))))).)	chr1:245026494-245026705(-)$1	1	158	198	14.1951
(((((((((..(.(((.......))).)..))))))))))	chr2:97532385-97532596(-)$1	1	21	61	14.9640
.(((((((.((((((((((....))))))))))..)))))	chr11:62392342-62392585(-)$1	1	181	221	15.6083
(((((((...(((.(......).)))...)))))))((((	chr15:23048563-23048811(-)$1	1	107	147	16.9926
((((((((.(..(((........)))...).)))))))))	chr22:50037558-50037815(-)$1	1	153	193	15.4753
((((.(((((((((((((.....)))))))))))))))))	chr1:44170917-44171172(+)$1	1	72	112	16.3250
(((((((((((((..((......))..)))))))))))))	chr19:10941847-10942115(+)$1	1	174	214	20.0442
((.(.((.((((.((((......)))).)))).)).).))	chr17:80807977-80808370(+)$1	1	235	275	13.3812
((..((.((((...((((((...))).)))...)))).))	chr4:1983479-1983734(+)$1	1	207	247	12.1696
(.((.(((((..(((.(......).))).))))).))).)	chr16:88782358-88782602(-)$1	1	164	204	14.2612
((((((..(((((..(......)..))).))..)).))))	chr2:219139014-219139307(-)$1	1	187	227	13.0295
.((((.((((((((((.(.....).)))))))))))))).	chr19:46893632-46893914(+)$1	1	240	280	13.7288

#PSSM
d : 0.16	g : 0.14	= : 0.14	e : 0.08	i : 0.08	c : 0.08	: : 0.08	! : 0.04	f : 0.04	[ : 0.04	b : 0.02	" : 0.02	# : 0.02	a : 0.02	
g : 0.16	d : 0.16	= : 0.14	i : 0.12	e : 0.10	c : 0.10	f : 0.06	[ : 0.06	! : 0.02	: : 0.02	# : 0.02	
g : 0.18	= : 0.14	i : 0.12	e : 0.10	[ : 0.08	d : 0.08	c : 0.08	! : 0.06	f : 0.04	b : 0.04	" : 0.02	a : 0.02	
g : 0.18	= : 0.16	i : 0.12	e : 0.10	! : 0.08	" : 0.06	d : 0.06	c : 0.06	a : 0.04	f : 0.04	b : 0.04	[ : 0.02	
g : 0.20	= : 0.20	[ : 0.12	i : 0.12	" : 0.08	e : 0.06	d : 0.04	f : 0.04	c : 0.04	b : 0.04	! : 0.02	
= : 0.27	g : 0.20	i : 0.12	b : 0.10	" : 0.06	e : 0.06	f : 0.06	c : 0.04	[ : 0.04	d : 0.02	
= : 0.33	g : 0.14	i : 0.12	b : 0.08	[ : 0.08	f : 0.06	" : 0.04	! : 0.04	e : 0.04	d : 0.02	c : 0.02	
= : 0.33	[ : 0.12	i : 0.12	g : 0.08	c : 0.06	f : 0.06	d : 0.06	! : 0.04	" : 0.04	b : 0.02	# : 0.02	e : 0.02	
= : 0.33	[ : 0.12	c : 0.10	d : 0.08	g : 0.06	i : 0.06	f : 0.04	b : 0.04	a : 0.04	" : 0.04	# : 0.02	! : 0.02	e : 0.02	
= : 0.33	c : 0.12	d : 0.10	b : 0.10	! : 0.06	i : 0.06	f : 0.04	g : 0.04	" : 0.04	# : 0.02	[ : 0.02	a : 0.02	e : 0.02	
= : 0.31	d : 0.10	c : 0.10	! : 0.08	[ : 0.06	# : 0.06	b : 0.06	f : 0.04	a : 0.04	g : 0.04	" : 0.04	$ : 0.02	i : 0.02	
= : 0.27	" : 0.16	! : 0.12	d : 0.10	c : 0.08	f : 0.06	a : 0.04	[ : 0.04	# : 0.04	$ : 0.02	b : 0.02	g : 0.02	
= : 0.25	" : 0.14	! : 0.12	c : 0.10	d : 0.08	f : 0.08	[ : 0.06	# : 0.06	$ : 0.02	b : 0.02	g : 0.02	e : 0.02	
= : 0.22	d : 0.16	" : 0.12	c : 0.08	[ : 0.08	! : 0.08	f : 0.06	# : 0.06	b : 0.04	$ : 0.02	g : 0.02	e : 0.02	
c : 0.27	= : 0.20	d : 0.18	b : 0.10	f : 0.06	! : 0.04	$ : 0.02	[ : 0.02	g : 0.02	# : 0.02	e : 0.02	a : 0.02	
c : 0.22	= : 0.20	b : 0.14	d : 0.14	[ : 0.06	f : 0.06	g : 0.02	# : 0.02	e : 0.02	r : 0.02	o : 0.02	q : 0.02	a : 0.02	
c : 0.22	= : 0.14	b : 0.12	d : 0.12	o : 0.10	f : 0.06	[ : 0.04	s : 0.02	g : 0.02	e : 0.02	m : 0.02	r : 0.02	p : 0.02	q : 0.02	a : 0.02	
o : 0.52	q : 0.06	m : 0.06	c : 0.06	= : 0.06	b : 0.04	r : 0.04	n : 0.04	s : 0.02	d : 0.02	f : 0.02	p : 0.02	a : 0.02	
o : 0.58	n : 0.08	q : 0.06	m : 0.06	c : 0.06	r : 0.04	= : 0.04	s : 0.02	l : 0.02	p : 0.02	
o : 0.58	m : 0.12	n : 0.08	q : 0.06	r : 0.04	c : 0.04	s : 0.02	l : 0.02	p : 0.02	
o : 0.58	m : 0.10	n : 0.08	q : 0.06	l : 0.06	r : 0.04	s : 0.02	b : 0.02	p : 0.02	
o : 0.56	n : 0.08	q : 0.06	m : 0.06	r : 0.04	c : 0.04	l : 0.04	s : 0.02	b : 0.02	d : 0.02	p : 0.02	a : 0.02	
o : 0.47	b : 0.06	q : 0.06	m : 0.06	d : 0.06	r : 0.04	c : 0.04	l : 0.04	n : 0.04	s : 0.02	3 : 0.02	p : 0.02	] : 0.02	a : 0.02	
c : 0.31	d : 0.14	= : 0.12	b : 0.08	o : 0.06	r : 0.04	q : 0.04	f : 0.04	a : 0.04	s : 0.02	g : 0.02	e : 0.02	3 : 0.02	2 : 0.02	
c : 0.27	d : 0.16	= : 0.12	] : 0.10	b : 0.08	f : 0.06	q : 0.04	3 : 0.04	r : 0.02	s : 0.02	g : 0.02	e : 0.02	2 : 0.02	
c : 0.33	= : 0.18	d : 0.14	b : 0.12	f : 0.06	r : 0.02	s : 0.02	g : 0.02	e : 0.02	4 : 0.02	3 : 0.02	2 : 0.02	
3 : 0.20	= : 0.20	d : 0.14	f : 0.08	b : 0.08	] : 0.08	c : 0.06	4 : 0.04	2 : 0.04	g : 0.02	e : 0.02	
= : 0.25	3 : 0.18	d : 0.10	f : 0.08	c : 0.08	] : 0.06	2 : 0.06	a : 0.04	g : 0.04	4 : 0.04	b : 0.02	e : 0.02	
= : 0.29	3 : 0.20	] : 0.10	f : 0.10	d : 0.10	2 : 0.06	c : 0.04	g : 0.04	4 : 0.04	
= : 0.29	b : 0.12	c : 0.10	d : 0.10	g : 0.08	a : 0.08	f : 0.06	i : 0.04	3 : 0.02	4 : 0.02	] : 0.02	2 : 0.02	e : 0.02	
= : 0.31	b : 0.12	c : 0.10	2 : 0.06	d : 0.06	g : 0.06	] : 0.06	3 : 0.06	i : 0.06	f : 0.04	a : 0.02	e : 0.02	
= : 0.33	] : 0.14	2 : 0.10	c : 0.08	i : 0.08	f : 0.06	g : 0.06	3 : 0.06	d : 0.04	e : 0.02	
= : 0.35	g : 0.14	i : 0.12	c : 0.06	2 : 0.06	] : 0.06	3 : 0.06	b : 0.04	f : 0.04	d : 0.02	e : 0.02	
= : 0.33	g : 0.18	i : 0.12	b : 0.08	f : 0.06	c : 0.04	e : 0.04	d : 0.04	2 : 0.04	3 : 0.02	] : 0.02	
= : 0.31	g : 0.18	i : 0.12	] : 0.08	c : 0.06	e : 0.06	d : 0.04	f : 0.04	2 : 0.04	b : 0.04	
= : 0.29	g : 0.20	i : 0.12	] : 0.08	e : 0.06	f : 0.04	c : 0.04	b : 0.04	d : 0.04	4 : 0.02	a : 0.02	2 : 0.02	
= : 0.22	g : 0.18	i : 0.12	d : 0.10	e : 0.08	c : 0.08	] : 0.06	f : 0.04	b : 0.04	4 : 0.02	a : 0.02	
g : 0.18	= : 0.14	i : 0.12	c : 0.10	e : 0.08	d : 0.08	f : 0.06	] : 0.06	4 : 0.04	2 : 0.04	3 : 0.02	> : 0.02	a : 0.02	
g : 0.18	= : 0.14	d : 0.12	c : 0.08	i : 0.08	2 : 0.06	f : 0.06	e : 0.06	] : 0.06	4 : 0.04	3 : 0.02	> : 0.02	: : 0.02	b : 0.02	
d : 0.18	= : 0.12	g : 0.10	: : 0.10	4 : 0.06	c : 0.06	i : 0.06	e : 0.04	2 : 0.04	f : 0.04	7 : 0.02	] : 0.02	3 : 0.02	I : 0.02	> : 0.02	a : 0.02	G : 0.02	b : 0.02	

#score	742.3181547577452
#seq	48
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_CDS_m1_run2.txt

#BEAR
ddd####ccc[bb[bboooooobb]bbccc333dd	chr11:9165723-9165983(-)$1	260	163	198	12.3895
HHHdddd[ddddcccooooooccc333dddd]ddd	chr3:47381881-47382166(+)$1	285	187	222	13.5154
bccc!!dddd!!cccooooooccc]ddddccc]bb	chr1:24123321-24123582(-)$1	261	173	208	15.4534
ggggggg[ccc[cccnnnnnccc]ccc]ggggggg	chrX:47106857-47107111(+)$1	254	115	150	12.4922
iiii[ccc####cccooooooccc]ccciiiiiii	chr14:21555008-21555293(+)$1	285	174	209	17.5910
:dddd[dddda[cccooooooccc22a]ddddddd	chr9:96023928-96024201(+)$1	273	101	136	14.6662
c[eeeee[bb[ddddoooooodddd]bb]eeeee2	chr13:115010195-115010490(+)$1	295	248	283	14.8280
fffff!!ccc[ddddoooooodddd22ccc22fff	chr12:54107557-54107859(-)$1	302	78	113	14.9928
gggggg!!ccc[aooooooa]ccc22gggggggcc	chr6:30457871-30458134(+)$1	263	25	60	14.6738
fffffcccccc[cccooooooccc]ccc]cccHHH	chr21:45106515-45106788(+)$1	273	207	242	13.7976
iii!!bb"""eeeeeooooooeeeeebb]iiiiii	chr8:141678411-141678696(-)$1	285	105	140	14.7175
dggggggg"""ddddoooooodddd]ggggggg]d	chr5:179264448-179264705(+)$1	257	22	57	16.5108
ddd"""ccc"""a[cccmmmmccc]a4444ccc33	chr20:60899493-60899783(-)$1	290	22	57	12.1438
ffeeeee[gggggggooooooggggggg]eeeee3	chr17:77078928-77079203(+)$1	275	104	139	14.3755
!ccc!!ggggggg[aooooooa]ggggggg]ccc2	chrX:152958310-152958596(+)$1	286	62	97	15.2357
[ggggggg!!eeeeeooooooeeeee4444ggggg	chr9:734611-734858(+)$1	247	59	94	15.1708
+dddd####a[ddddoooooodddd]a333ddddd	chr19:40741131-40741412(-)$1	281	65	100	15.4839
hhh:eeeee"""cccooooooccc333eeeee::b	chr16:90023722-90023998(+)$1	276	114	149	13.3604
iiiiiiiii[ccc[aooooooa]ccciiiiiiiii	chr19:2235738-2236016(-)$1	278	67	102	15.9854
eeeeeeeeee!!cccooooooccc]eeeee]eeee	chr22:50689197-50689533(-)$1	336	158	193	15.1640
ccc[ccca!!ddddoooooodddd22a]ccc]ccc	chr19:49421828-49422071(+)$1	243	8	43	15.4127
cc!!bb[ggggggg!!aooooooa22ggggggg]b	chr1:38274067-38274346(+)$1	279	218	253	13.1395
!!dddd!!ddddcccooooooccc]dddd333ddd	chr16:89804062-89804316(+)$1	254	107	142	15.6773
""eeeee####ddddooooooddddeeeee]ccc]	chr7:6054623-6054916(+)$1	293	23	58	15.6372
dd!!bb[a!!ddddoooooodddd22a]bb22ddd	chr19:35500161-35500429(+)$1	268	61	96	14.1297
c"""===========oooooo===========333	chr9:116831952-116832193(-)$1	241	98	133	16.8075
=========[a[ddddnnnnndddd]a]=======	chr20:61438737-61438995(+)$1	258	93	128	13.5133
d[bb!!ccc!!ddddoooooodddd]ccc]bb]dd	chr6:158482876-158483166(+)$1	290	185	220	15.3925
a[ccc!!bb[eeeeeooooooeeeeebb22ccc]a	chr1:17743038-17743346(-)$1	308	171	206	13.4441
e[dddd[a####cccooooooccc4444a]dddd]	chr22:50636359-50636632(+)$1	273	141	176	16.7845
eeee[eeeee[ddddoooooodddd]eeeee]eee	chr20:62371643-62371883(+)$1	240	18	53	14.7088
ccc"""bb[a[ddddoooooodddd]abbcccddd	chr3:48459343-48459621(-)$1	278	164	199	15.3347
[bb!!eeeee!!cccooooooccc22eeeee22bb	chr17:74381377-74381636(+)$1	259	141	176	15.4614
b[eeeee[a!!ccc[aooooooaccca]eeeeebb	chr8:21893980-21894268(+)$1	288	126	161	14.2954
ccc[bba[ccc!!bboooooobb22ccc]a]bb33	chr16:46934439-46934697(+)$1	258	191	226	14.3013
iiiii[gggggggrrrrrrrrrgggggggiiiiii	chr19:45867704-45867958(-)$1	254	110	145	11.1522
===!!ccc[arrrrrrrrra]ccc22=========	chr2:74230080-74230344(+)$1	264	148	183	11.5859
fffccc[ccc!!cccooooooccc22ccc]ccc::	chr3:50004763-50005060(+)$1	297	164	199	15.3082
ddgggggggccccccnnnnnccc]ccc]ggggggg	chr1:45279127-45279411(+)$1	284	122	157	11.7299
"""ggggggg####ccclllccc333ggggggg33	chr19:36221292-36221547(+)$1	255	13	48	12.6218
ccc####dddd!!ddddllldddd22dddd4444c	chr2:97494585-97494841(+)$1	256	112	147	11.0720
ff!!bb[ccc[ddddoooooodddd333ccc]bb2	chr15:42476792-42477050(-)$1	258	15	50	15.8823
[dddd[ccc"""cccooooooccc]ccc22dddd]	chr1:44054228-44054510(+)$1	282	42	77	16.3224
b[eeeee"""bb[bboooooobbbb]eeeee]bb3	chr7:2402554-2402810(+)$1	256	118	153	12.9111
=========a!!cccooooooccc22a]=======	chr17:7228198-7228474(-)$1	276	172	207	18.7907
gggggg####eeeeennnnneeeee4444gggggg	chr20:43561544-43561834(+)$1	290	39	74	11.4555
!!eeeee!!ddddbboooooobb]dddd22eeeee	chr15:43022837-43023103(-)$1	266	81	116	13.3095
ddd[bb[dddd[cccooooooccc]dddd]bbddd	chr1:228334960-228335211(+)$1	251	77	112	14.3471
!!ccc[dddd[ddddoooooodddd4444dddd33	chr22:28392141-28392411(-)$1	270	15	50	15.8234
ff"""bb[ccc[cccooooooccc]cccbb22fff	chrX:70518224-70518459(+)$1	235	196	231	15.0129

#otherMatches

#Seq PSSM
CGUGUGGCCGGUGGUUAGGGAAGGGCAUGGAUGAU	chr11:9165723-9165983(-)$1	260	163	198	12.3895
GGGACAGUCGUGCUGGAUGGGCAGAUCUACGUCUG	chr3:47381881-47382166(+)$1	285	187	222	13.5154
CCUGAAUGUCUUUGGCAAUGACUAUGACACAGAGG	chr1:24123321-24123582(-)$1	261	173	208	15.4534
GGAAGGGUAGGCGAGGAUAACUCUCCUUCCCUUUC	chrX:47106857-47107111(+)$1	254	115	150	12.4922
UCCAUGGGCAUUGGGAAUAAACCCUUCCUGGACAU	chr14:21555008-21555293(+)$1	285	174	209	17.5910
UGGGCACGGCCCCCUCAGUGAAGGCAGCGCCGGCC	chr9:96023928-96024201(+)$1	273	101	136	14.6662
GGUAAGACUUUUUUUUAAAUUAAAGUAAUUCUUAG	chr13:115010195-115010490(+)$1	295	248	283	14.8280
UGUUUAGUCUAAUGAUACCCCUCAUCCAGAGGAGA	chr12:54107557-54107859(-)$1	302	78	113	14.9928
ACCGGGGAGAGUCUCAGGCGCCUUUACCCGGUUCU	chr6:30457871-30458134(+)$1	263	25	60	14.6738
UCUGCUGAUGAAGAUGACCAAAUCCUCAGUCAAGG	chr21:45106515-45106788(+)$1	273	207	242	13.7976
AGCUUGAUUGUGGUGAUCUCACGCCAUCUGCUGGA	chr8:141678411-141678696(-)$1	285	105	140	14.7175
CCAGGGGCCCACCCUCUGCCCAGGGAGUCCUUGCG	chr5:179264448-179264705(+)$1	257	22	57	16.5108
CUGACCAGCCUCUGACCCAGCGGUGACCAUGCUCC	chr20:60899493-60899783(-)$1	290	22	57	12.1438
UCACUGGCGUCCAGGAGCCUGUCUGGACUCUGGUC	chr17:77078928-77079203(+)$1	275	104	139	14.3755
CAUGGCUCGGAGGACAAUGGGGACCUCUGAACAUA	chrX:152958310-152958596(+)$1	286	62	97	15.2357
aaaaaUUAGAUAUUUGGGUUGAAAUAAAAAUGAUU	chr9:734611-734858(+)$1	247	59	94	15.1708
AGGGCCAUACAGGGCCUGCCUGCUCCGAAAGCCCG	chr19:40741131-40741412(-)$1	281	65	100	15.4839
UGGGCCUGUCUCGGCGGAUGGGCCUUAACAGGGAG	chr16:90023722-90023998(+)$1	276	114	149	13.3604
CUUCUACUUUCGGACAGACGAGGCCGAGGUAGGGG	chr19:2235738-2236016(-)$1	278	67	102	15.9854
GCGGGGAGGGACCUCUGAACUGAGCUCCUCAUCUG	chr22:50689197-50689533(-)$1	336	158	193	15.1640
CUGGGGGCCACCGUUCCACCGCGGGAGACCCGUAG	chr19:49421828-49422071(+)$1	243	8	43	15.4127
CCCAGCAGCUGCUGGACGCGGUGGAGCAGCGGCAG	chr1:38274067-38274346(+)$1	279	218	253	13.1395
UUGGAGCAUCAGGGGCCUGGACUCACUGGACUCUC	chr16:89804062-89804316(+)$1	254	107	142	15.6773
agccCAUAAUGUCUUCUUUUAAAGGGUGGGAGGUU	chr7:6054623-6054916(+)$1	293	23	58	15.6372
GCAACAGCAAGGUUGGUGCAAGCCCAGGUGGGGUG	chr19:35500161-35500429(+)$1	268	61	96	14.1297
AAAUCCGGGUCUAGGAUGGCCCCUGGGCCUGGUCC	chr9:116831952-116832193(-)$1	241	98	133	16.8075
UUGGGACUCACUUGGGGGUCUCCCAUGGGGGUCCU	chr20:61438737-61438995(+)$1	258	93	128	13.5133
UAUGAUCAAUUUUGACUUCCAUCAGUUUGCCAAAG	chr6:158482876-158483166(+)$1	290	185	220	15.3925
UGCUGCUGAUGGCCGGCUCUGUGGUCUCUACAGGA	chr1:17743038-17743346(-)$1	308	171	206	13.4441
CAGCCGAGCCCAGGAAGUGCGUCCCCUCCGUGGUC	chr22:50636359-50636632(+)$1	273	141	176	16.7845
GCGGAGGUUGAGGGACCCCCCUCCCCCGGCCACCG	chr20:62371643-62371883(+)$1	240	18	53	14.7088
UGGGCCUGUAGACGGAGGCACCCGUGUCACCAUCA	chr3:48459343-48459621(-)$1	278	164	199	15.3347
UUCUCUCCCUCAGGUCCAGCCGCCGCAGGGAAUGA	chr17:74381377-74381636(+)$1	259	141	176	15.4614
GAGAAGGGAACGGGACCCUGGAGCCCUGCCUUCCC	chr8:21893980-21894268(+)$1	288	126	161	14.2954
GCCCCAGCUUCCCAGAAGAUGCUAAGAAACGUGCC	chr16:46934439-46934697(+)$1	258	191	226	14.3013
UGGGGUGGCAGGGCCCUGGUAACCCUGCUCCCCGG	chr19:45867704-45867958(-)$1	254	110	145	11.1522
UUUUGCAGGUGGAAAUAAAGGCUGGUGAAGGAGCC	chr2:74230080-74230344(+)$1	264	148	183	11.5859
CCCGGGUGGAACAGGGAUUAUCCUCCUCCUCCCCU	chr3:50004763-50005060(+)$1	297	164	199	15.3082
CACGGUCCUCGGGGCGAGGGGCCACCGCGGGACUG	chr1:45279127-45279411(+)$1	284	122	157	11.7299
AACUUCAAGCGGAAGUUCUUGACGGGGCUUGAACC	chr19:36221292-36221547(+)$1	255	13	48	12.6218
ACCAAUUGGGUCCCAGUAACGCUGUCAUCCUCCAG	chr2:97494585-97494841(+)$1	256	112	147	11.0720
UAAACUCUGUAACAUUUUCUUAUGUCAAACAAGGA	chr15:42476792-42477050(-)$1	258	15	50	15.8823
UGCCACCCCUCCUGUCUCUGAGCAUGGGUUUGGCU	chr1:44054228-44054510(+)$1	282	42	77	16.3224
CGUGGGGCUCAGCAGUCUCCUUUCUUCUCCAGGUA	chr7:2402554-2402810(+)$1	256	118	153	12.9111
CAGUGCCACCGAUGACUUCAAUCACGGCGUGGUGC	chr17:7228198-7228474(-)$1	276	172	207	18.7907
GUUUCCCUUCCCAUUCUCUUGGUGGCCCUGGAAGC	chr20:43561544-43561834(+)$1	290	39	74	11.4555
AAGGGCAUCUCCCAGCCCUUCCUAGGGACCUGCCC	chr15:43022837-43023103(-)$1	266	81	116	13.3095
GGUGUCCCUGAAGCUCCUGUAGGCCUCAGAGAGCC	chr1:228334960-228335211(+)$1	251	77	112	14.3471
AUGCCCCAGGCCAGCCUGUGAGCUGCUCCCCUGCC	chr22:28392141-28392411(-)$1	270	15	50	15.8234
UAGCUUCUGCUGCCUACUUUAAGGGGGUGACAUAU	chrX:70518224-70518459(+)$1	235	196	231	15.0129

#DB
(((....(((.((.((......)).)))))...))	chr11:9165723-9165983(-)$1	1	163	198	12.3895
(((((((.(((((((......)))...)))).)))	chr3:47381881-47382166(+)$1	1	187	222	13.5154
((((..((((..(((......))).))))))).))	chr1:24123321-24123582(-)$1	1	173	208	15.4534
(((((((.(((.(((.....))).))).)))))))	chrX:47106857-47107111(+)$1	1	115	150	12.4922
((((.(((....(((......))).))))))))))	chr14:21555008-21555293(+)$1	1	174	209	17.5910
.((((.(((((.(((......)))..).)))))))	chr9:96023928-96024201(+)$1	1	101	136	14.6662
(.(((((.((.((((......)))).)).))))).	chr13:115010195-115010490(+)$1	1	248	283	14.8280
(((((..(((.((((......))))..)))..)))	chr12:54107557-54107859(-)$1	1	78	113	14.9928
((((((..(((.(......).)))..)))))))((	chr6:30457871-30458134(+)$1	1	25	60	14.6738
)))))((((((.(((......))).))).))))))	chr21:45106515-45106788(+)$1	1	207	242	13.7976
(((..((...(((((......))))))).))))))	chr8:141678411-141678696(-)$1	1	105	140	14.7175
((((((((...((((......)))).))))))).)	chr5:179264448-179264705(+)$1	1	22	57	16.5108
(((...(((...(.(((....))).)....)))..	chr20:60899493-60899783(-)$1	1	22	57	12.1438
(((((((.(((((((......))))))).))))).	chr17:77078928-77079203(+)$1	1	104	139	14.3755
.(((..(((((((.(......).))))))).))).	chrX:152958310-152958596(+)$1	1	62	97	15.2357
.(((((((..(((((......)))))....)))))	chr9:734611-734858(+)$1	1	59	94	15.1708
.((((....(.((((......)))).)...)))))	chr19:40741131-40741412(-)$1	1	65	100	15.4839
))).(((((...(((......)))...)))))..(	chr16:90023722-90023998(+)$1	1	114	149	13.3604
(((((((((.(((.(......).))))))))))))	chr19:2235738-2236016(-)$1	1	67	102	15.9854
((((((((((..(((......))).))))).))))	chr22:50689197-50689533(-)$1	1	158	193	15.1640
(((.((((..((((......))))..).))).)))	chr19:49421828-49422071(+)$1	1	8	43	15.4127
((..((.(((((((..(......)..))))))).)	chr1:38274067-38274346(+)$1	1	218	253	13.1395
..((((..(((((((......))).))))...)))	chr16:89804062-89804316(+)$1	1	107	142	15.6773
..(((((....((((......))))))))).))).	chr7:6054623-6054916(+)$1	1	23	58	15.6372
((..((.(..((((......))))..).))..)))	chr19:35500161-35500429(+)$1	1	61	96	14.1297
(...(((((((((((......)))))))))))...	chr9:116831952-116832193(-)$1	1	98	133	16.8075
(((((((((.(.((((.....)))).).)))))))	chr20:61438737-61438995(+)$1	1	93	128	13.5133
(.((..(((..((((......)))).))).)).))	chr6:158482876-158483166(+)$1	1	185	220	15.3925
(.(((..((.(((((......)))))))..))).)	chr1:17743038-17743346(-)$1	1	171	206	13.4441
(.((((.(....(((......)))....).)))).	chr22:50636359-50636632(+)$1	1	141	176	16.7845
((((.(((((.((((......)))).))))).)))	chr20:62371643-62371883(+)$1	1	18	53	14.7088
(((...((.(.((((......)))).)))))))))	chr3:48459343-48459621(-)$1	1	164	199	15.3347
.((..(((((..(((......)))..)))))..))	chr17:74381377-74381636(+)$1	1	141	176	15.4614
(.(((((.(..(((.(......))))).)))))))	chr8:21893980-21894268(+)$1	1	126	161	14.2954
(((.(((.(((..((......))..))).).))..	chr16:46934439-46934697(+)$1	1	191	226	14.3013
(((((.(((((((.........)))))))))))))	chr19:45867704-45867958(-)$1	1	110	145	11.1522
(((..(((.(.........).)))..)))))))))	chr2:74230080-74230344(+)$1	1	148	183	11.5859
)))(((.(((..(((......)))..))).)))..	chr3:50004763-50005060(+)$1	1	164	199	15.3082
))(((((((((((((.....))).))).)))))))	chr1:45279127-45279411(+)$1	1	122	157	11.7299
...(((((((....(((...)))...)))))))..	chr19:36221292-36221547(+)$1	1	13	48	12.6218
(((....((((..((((...))))..))))....)	chr2:97494585-97494841(+)$1	1	112	147	11.0720
((..((.(((.((((......))))...))).)).	chr15:42476792-42477050(-)$1	1	15	50	15.8823
.((((.(((...(((......))).)))..)))).	chr1:44054228-44054510(+)$1	1	42	77	16.3224
(.(((((...((.((......)))).))))).)).	chr7:2402554-2402810(+)$1	1	118	153	12.9111
((((((((((..(((......)))..).)))))))	chr17:7228198-7228474(-)$1	1	172	207	18.7907
((((((....(((((.....)))))....))))))	chr20:43561544-43561834(+)$1	1	39	74	11.4555
..(((((..((((((......)).))))..)))))	chr15:43022837-43023103(-)$1	1	81	116	13.3095
(((.((.((((.(((......))).)))).)))))	chr1:228334960-228335211(+)$1	1	77	112	14.3471
..(((.((((.((((......))))....))))..	chr22:28392141-28392411(-)$1	1	15	50	15.8234
((...((.(((.(((......))).)))))..)))	chrX:70518224-70518459(+)$1	1	196	231	15.0129

#PSSM
d : 0.14	c : 0.14	f : 0.12	i : 0.08	! : 0.08	b : 0.06	g : 0.06	[ : 0.06	e : 0.06	= : 0.06	" : 0.04	H : 0.02	: : 0.02	+ : 0.02	h : 0.02	a : 0.02	
d : 0.16	c : 0.14	[ : 0.12	f : 0.12	g : 0.10	i : 0.08	! : 0.06	" : 0.06	= : 0.06	e : 0.04	H : 0.02	h : 0.02	b : 0.02	
d : 0.16	c : 0.16	e : 0.16	g : 0.12	i : 0.08	f : 0.06	! : 0.06	" : 0.06	= : 0.06	b : 0.04	H : 0.02	h : 0.02	
e : 0.16	g : 0.14	d : 0.12	! : 0.12	c : 0.10	" : 0.08	i : 0.06	[ : 0.06	# : 0.04	f : 0.04	= : 0.04	: : 0.02	b : 0.02	
e : 0.16	g : 0.14	d : 0.12	! : 0.12	b : 0.10	c : 0.08	" : 0.06	= : 0.06	# : 0.04	[ : 0.04	f : 0.04	i : 0.04	
e : 0.19	g : 0.14	b : 0.14	! : 0.10	c : 0.10	[ : 0.08	# : 0.06	d : 0.06	= : 0.06	" : 0.04	i : 0.02	
e : 0.19	g : 0.14	c : 0.14	[ : 0.12	# : 0.08	d : 0.08	! : 0.08	b : 0.06	= : 0.06	i : 0.02	a : 0.02	
c : 0.19	[ : 0.14	g : 0.14	d : 0.10	e : 0.08	! : 0.06	# : 0.06	a : 0.06	= : 0.06	" : 0.04	b : 0.04	i : 0.02	
c : 0.23	d : 0.14	g : 0.12	# : 0.10	! : 0.08	e : 0.08	" : 0.06	= : 0.06	b : 0.04	[ : 0.04	i : 0.02	a : 0.02	
c : 0.19	d : 0.16	" : 0.12	g : 0.10	! : 0.10	# : 0.08	a : 0.08	[ : 0.06	e : 0.06	b : 0.02	= : 0.02	
[ : 0.16	d : 0.14	! : 0.14	c : 0.14	# : 0.08	e : 0.08	" : 0.08	g : 0.08	a : 0.04	= : 0.02	r : 0.02	b : 0.02	
d : 0.30	! : 0.14	[ : 0.14	e : 0.08	g : 0.08	# : 0.06	" : 0.06	c : 0.06	b : 0.04	= : 0.02	r : 0.02	
c : 0.38	d : 0.27	e : 0.08	g : 0.08	a : 0.04	! : 0.04	b : 0.02	= : 0.02	r : 0.02	# : 0.02	[ : 0.02	
c : 0.36	d : 0.27	[ : 0.08	e : 0.08	b : 0.06	g : 0.04	r : 0.04	o : 0.02	= : 0.02	# : 0.02	
c : 0.38	d : 0.23	b : 0.08	e : 0.08	o : 0.06	a : 0.04	r : 0.04	g : 0.02	! : 0.02	= : 0.02	[ : 0.02	
o : 0.76	n : 0.06	c : 0.04	d : 0.04	r : 0.04	b : 0.02	! : 0.02	a : 0.02	
o : 0.80	n : 0.08	c : 0.04	r : 0.04	a : 0.02	d : 0.02	
o : 0.82	n : 0.08	r : 0.04	l : 0.04	m : 0.02	
o : 0.82	n : 0.08	r : 0.04	l : 0.04	m : 0.02	
o : 0.80	n : 0.08	a : 0.04	l : 0.04	m : 0.02	r : 0.02	
o : 0.76	c : 0.06	d : 0.06	] : 0.04	m : 0.02	n : 0.02	r : 0.02	e : 0.02	
c : 0.42	d : 0.27	e : 0.08	o : 0.06	b : 0.06	a : 0.04	g : 0.02	= : 0.02	r : 0.02	
c : 0.42	d : 0.27	b : 0.08	e : 0.08	g : 0.04	] : 0.04	o : 0.02	= : 0.02	a : 0.02	
c : 0.40	d : 0.27	e : 0.08	] : 0.06	g : 0.06	b : 0.04	a : 0.02	= : 0.02	2 : 0.02	3 : 0.02	
d : 0.23	2 : 0.21	] : 0.19	c : 0.08	e : 0.08	3 : 0.06	g : 0.06	= : 0.02	4 : 0.02	b : 0.02	
2 : 0.21	c : 0.18	] : 0.16	e : 0.10	3 : 0.08	d : 0.08	g : 0.06	4 : 0.06	b : 0.02	a : 0.02	= : 0.02	
c : 0.18	a : 0.16	g : 0.14	d : 0.10	4 : 0.10	e : 0.10	b : 0.08	3 : 0.06	= : 0.04	2 : 0.02	i : 0.02	
c : 0.18	] : 0.16	g : 0.14	d : 0.12	e : 0.12	4 : 0.10	b : 0.08	3 : 0.04	= : 0.04	i : 0.02	
g : 0.16	e : 0.14	c : 0.12	d : 0.12	] : 0.10	4 : 0.08	= : 0.08	b : 0.06	2 : 0.06	i : 0.04	3 : 0.02	a : 0.02	
e : 0.18	g : 0.16	c : 0.14	d : 0.08	i : 0.08	= : 0.08	] : 0.08	2 : 0.06	4 : 0.04	3 : 0.04	b : 0.04	a : 0.02	
c : 0.16	g : 0.16	e : 0.16	d : 0.12	i : 0.08	] : 0.08	= : 0.08	2 : 0.06	3 : 0.04	b : 0.04	4 : 0.02	
c : 0.16	g : 0.16	e : 0.12	] : 0.10	d : 0.10	i : 0.08	2 : 0.08	= : 0.08	b : 0.06	3 : 0.04	4 : 0.02	
d : 0.19	g : 0.16	e : 0.12	c : 0.12	i : 0.08	= : 0.06	b : 0.06	3 : 0.04	] : 0.04	f : 0.04	H : 0.02	: : 0.02	2 : 0.02	4 : 0.02	
d : 0.21	b : 0.10	e : 0.10	3 : 0.10	g : 0.08	i : 0.08	c : 0.08	] : 0.06	= : 0.06	f : 0.04	: : 0.04	H : 0.02	4 : 0.02	
d : 0.19	3 : 0.14	b : 0.10	g : 0.08	i : 0.08	2 : 0.06	c : 0.06	e : 0.06	] : 0.06	= : 0.06	f : 0.04	H : 0.02	a : 0.02	: : 0.02	

#score	723.9150091020801
#seq	50
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_UTR_m1_run1.txt

#BEAR
=======[assssssssssa]====	chr11:62392536-62392798(-)$1	262	125	150	19.5327
dddddddduuuuuuuuuuuudddd:	chr11:2160103-2160320(-)$1	217	113	138	19.3696
dddddddduuuuuuuuuuuudddd:	chr11:2160141-2160354(-)$1	213	147	172	19.3696
$$eeeeevvvvvvvvvvvvveeeee	chr4:152024372-152024655(+)$1	283	193	218	18.7167
dddddddduuuuuuuuuuuudddd:	chr11:2160091-2160303(-)$1	212	96	121	19.3696
b####ddddssssssssssdddd33	chr1:204521594-204521841(+)$1	247	66	91	18.1261
iiiii!!attttttttttta22iii	chr2:178086034-178086284(+)$1	250	34	59	21.1637
iiiiiiiiissssssssssiiiiii	chr11:2150533-2150741(-)$1	208	76	101	18.6098
c$$$$$ccctttttttttttccc66	chr17:80708882-80709160(+)$1	278	117	142	19.4022
eee!!ddddtttttttttttdddd]	chr11:2160231-2160449(-)$1	218	188	213	21.1450
ddddddddassssssssssa]dddd	chr2:230765434-230765660(-)$1	226	171	196	17.5443
ccgggggggtttttttttttggggg	chr11:2151318-2151522(-)$1	204	102	127	21.7280
:gggggggtttttttttttgggggg	chr11:2151334-2151536(-)$1	202	117	142	20.5937
ccc[eeeeevvvvvvvvvvvvveee	chr2:231912017-231912308(+)$1	291	82	107	18.4651
:ffffffuuuuuuuuuuuuffffff	chr6:150045866-150046108(-)$1	242	33	58	17.7230
ccgggggggtttttttttttggggg	chr11:2151300-2151507(-)$1	207	87	112	21.7280
$$$$eeeeesssssssssseeeee3	chr4:152024314-152024569(+)$1	255	76	101	17.8331
ccgggggggtttttttttttggggg	chr11:2151307-2151518(-)$1	211	98	123	21.7280
hhhhhhhhwwwwwwwwwwwwwwhhh	chr19:58199910-58200165(+)$1	255	59	84	17.0803
ggg!!ddddtttttttttttdddd]	chr11:2160222-2160425(-)$1	203	164	189	21.6593
ggg!!ddddtttttttttttdddd]	chr11:2160225-2160431(-)$1	206	170	195	21.6593
=========ttttttttttt=====	chr11:2151053-2151277(-)$1	224	6	31	22.2814
iiiiiiiiissssssssssiiiiii	chr11:2150518-2150730(-)$1	212	65	90	18.6098
[ccc[cccuuuuuuuuuuuuccc22	chr19:11257826-11258121(-)$1	295	144	169	20.8543
!gggggggwwwwwwwwwwwwwwggg	chr20:23614214-23614445(-)$1	231	193	218	19.3813
:gggggggtttttttttttgggggg	chr11:2151380-2151590(-)$1	210	171	196	20.5937
iiiiiiiiissssssssssiiiiii	chr11:2150453-2150666(-)$1	213	1	26	18.6098
=========ttttttttttt=====	chr11:2151091-2151299(-)$1	208	28	53	22.2814
ccc[eeeeettttttttttteeeee	chr16:10623885-10624187(-)$1	302	194	219	21.3298
ffff!!cccssssssssssccc22f	chr11:65622487-65622756(-)$1	269	181	206	17.1351
ddd"""ccctttttttttttccc44	chr19:50024840-50025090(+)$1	250	148	173	21.0256
dddd!!bbtttttttttttbb22dd	chr17:47128057-47128341(+)$1	284	4	29	18.6417
eccc[ddddtttttttttttdddd]	chr1:32832495-32832746(-)$1	251	219	244	21.1130
:ffffffuuuuuuuuuuuuffffff	chr6:150045908-150046137(-)$1	229	62	87	17.7230
c"""eeeeesssssssssseeeee3	chr11:2160411-2160617(-)$1	206	34	59	18.7929
####eeeeesssssssssseeeeef	chr5:149781283-149781533(-)$1	250	147	172	18.1864
a[eeeeevvvvvvvvvvvvveeeee	chr6:31509086-31509339(-)$1	253	211	236	19.1190
ggggggguuuuuuuuuuuugggggg	chr22:41677944-41678229(-)$1	285	244	269	20.5341
c"""eeeeesssssssssseeeee3	chr11:2160417-2160621(-)$1	204	38	63	18.7929
ddbbeeeeesssssssssseeeee2	chr5:149781551-149781843(-)$1	292	177	202	17.4149
dddddddduuuuuuuuuuuudddd:	chr11:2160083-2160286(-)$1	203	79	104	19.3696
::cccwwwwwwwwwwwwwwccca[e	chr7:917488-917737(+)$1	249	91	116	15.4386
gggggggvvvvvvvvvvvvvggggg	chr2:32535572-32535896(+)$1	324	161	186	19.9738
c"""eeeeesssssssssseeeee3	chr11:2160393-2160610(-)$1	217	27	52	18.7929
ddgggggggtttttttttttggggg	chr17:79530618-79530879(-)$1	261	78	103	21.4959
eee!!ddddssssssssssdddd44	chr19:45324522-45324756(+)$1	234	90	115	17.8396
iiiiiiiiissssssssssiiiiii	chr11:2150506-2150711(-)$1	205	46	71	18.6098
bb"""ddddssssssssssdddd33	chr20:33298153-33298439(+)$1	286	258	283	17.9441
gggggggwwwwwwwwwwwwwwgggg	chr12:69236969-69237199(+)$1	230	69	94	19.5539
iiiiiiiiissssssssssiiiiii	chr11:2150484-2150696(-)$1	212	31	56	18.6098
ccgggggggtttttttttttggggg	chr11:2151296-2151500(-)$1	204	80	105	21.7280
c"""eeeeesssssssssseeeee3	chr11:2160377-2160593(-)$1	216	10	35	18.7929
iiiiiiiiissssssssssiiiiii	chr11:2150466-2150684(-)$1	218	19	44	18.6098
ggg!!bb[assssssssssa]bb22	chr17:41370069-41370324(+)$1	255	151	176	17.5994
dddddddduuuuuuuuuuuudddd:	chr11:2160154-2160393(-)$1	239	186	211	19.3696
iiiiiiiiissssssssssiiiiii	chr11:2150541-2150749(-)$1	208	84	109	18.6098
GG:eeeeettttttttttteeeee:	chr2:37328665-37328927(-)$1	262	6	31	17.7821
=========ttttttttttt=====	chr11:2151086-2151291(-)$1	205	20	45	22.2814
e[ddddcccssssssssssccc333	chr7:116608286-116608592(+)$1	306	161	186	17.9276
!!fffffftttttttttttffffff	chr1:160061115-160061385(-)$1	270	40	65	19.6119
:gggggggtttttttttttgggggg	chr11:2151336-2151543(-)$1	207	124	149	20.5937

#otherMatches

#Seq PSSM
AGCUGCUGCAAUUCUUAGAGGGGCA	chr11:62392536-62392798(-)$1	262	125	150	19.5327
CACCGCCUGUCCCCCUCCCGAGGCC	chr11:2160103-2160320(-)$1	217	113	138	19.3696
CACCGCCUGUCCCCCUCCCGAGGCC	chr11:2160141-2160354(-)$1	213	147	172	19.3696
cagcuaauuuuuuuaaauuuuuagu	chr4:152024372-152024655(+)$1	283	193	218	18.7167
CACCGCCUGUCCCCCUCCCGAGGCC	chr11:2160091-2160303(-)$1	212	96	121	19.3696
aggcuggucucgaacuccugaccuc	chr1:204521594-204521841(+)$1	247	66	91	18.1261
UUUUAUUCAUAUAAAUAAAGUUUAA	chr2:178086034-178086284(+)$1	250	34	59	21.1637
CCUGGGCCACUAACCAUCCUGGCCC	chr11:2150533-2150741(-)$1	208	76	101	18.6098
gucccugucccccuucccccgaccc	chr17:80708882-80709160(+)$1	278	117	142	19.4022
AGCCUCGGGCCGCUCCCCUUUCCGC	chr11:2160231-2160449(-)$1	218	188	213	21.1450
uccccugccgcagccuccagagcag	chr2:230765434-230765660(-)$1	226	171	196	17.5443
AGGCUGGCCGGAGGGGAAGGGGCUA	chr11:2151318-2151522(-)$1	204	102	127	21.7280
GGCUGGCCGGAGGGGAAGGGGCUAG	chr11:2151334-2151536(-)$1	202	117	142	20.5937
GUUGAGAGUGCAGCUGGGAAGAACU	chr2:231912017-231912308(+)$1	291	82	107	18.4651
uaugguauucccaacaaauuaucau	chr6:150045866-150046108(-)$1	242	33	58	17.7230
AGGCUGGCCGGAGGGGAAGGGGCUA	chr11:2151300-2151507(-)$1	207	87	112	21.7280
AAAUAUGAUUAUUAUUACUAUUAUU	chr4:152024314-152024569(+)$1	255	76	101	17.8331
AGGCUGGCCGGAGGGGAAGGGGCUA	chr11:2151307-2151518(-)$1	211	98	123	21.7280
UGCUUGGGGAAAUUAUUAAUAGCCC	chr19:58199910-58200165(+)$1	255	59	84	17.0803
AGCCUCGGGCCGCUCCCCUUUCCGC	chr11:2160222-2160425(-)$1	203	164	189	21.6593
AGCCUCGGGCCGCUCCCCUUUCCGC	chr11:2160225-2160431(-)$1	206	170	195	21.6593
AGGAGGUCCGAAGCUCUGUGGGACC	chr11:2151053-2151277(-)$1	224	6	31	22.2814
CCUGGGCCACUAACCAUCCUGGCCC	chr11:2150518-2150730(-)$1	212	65	90	18.6098
UCUGUGCCUCAGUCCAUCAUGGCCC	chr19:11257826-11258121(-)$1	295	144	169	20.8543
AGGGUUUCCGCAGUUCCUUUAUGAA	chr20:23614214-23614445(-)$1	231	193	218	19.3813
GGCUGGCCGGAGGGGAAGGGGCUAG	chr11:2151380-2151590(-)$1	210	171	196	20.5937
CCUGGGCCACUAACCAUCCUGGCCC	chr11:2150453-2150666(-)$1	213	1	26	18.6098
AGGAGGUCCGAAGCUCUGUGGGACC	chr11:2151091-2151299(-)$1	208	28	53	22.2814
GAGACAGGACAAAUGUCACCUCCUG	chr16:10623885-10624187(-)$1	302	194	219	21.3298
UGGGCUGAAGCAGACCAAGUUCCCC	chr11:65622487-65622756(-)$1	269	181	206	17.1351
ggauuagaguucacugcagccucaa	chr19:50024840-50025090(+)$1	250	148	173	21.0256
UGAAAGGUGUGUCUAAAAAACAAUU	chr17:47128057-47128341(+)$1	284	4	29	18.6417
GCCAUCACCUUGUGGUGUCUGGUGU	chr1:32832495-32832746(-)$1	251	219	244	21.1130
uaugguauucccaacaaauuaucau	chr6:150045908-150046137(-)$1	229	62	87	17.7230
gccccggccccccccuuccggccgc	chr11:2160411-2160617(-)$1	206	34	59	18.7929
UUCUAGCCUAUUUACCUGCAGGCUG	chr5:149781283-149781533(-)$1	250	147	172	18.1864
CACCUAUUAGCUUUCUUAUUGUAGG	chr6:31509086-31509339(-)$1	253	211	236	19.1190
cugcuaauuguauuuauuuuuagua	chr22:41677944-41678229(-)$1	285	244	269	20.5341
gccccggccccccccuuccggccgc	chr11:2160417-2160621(-)$1	204	38	63	18.7929
CACCCUUGGACAAGACAAACCAAGU	chr5:149781551-149781843(-)$1	292	177	202	17.4149
CACCGCCUGUCCCCCUCCCGAGGCC	chr11:2160083-2160286(-)$1	203	79	104	19.3696
ccgcauucccccaccucccugccuc	chr7:917488-917737(+)$1	249	91	116	15.4386
ggccaggaguucaaaaucagccugg	chr2:32535572-32535896(+)$1	324	161	186	19.9738
gccccggccccccccuuccggccgc	chr11:2160393-2160610(-)$1	217	27	52	18.7929
gcugcAAAAUuuuuuaauauuuuug	chr17:79530618-79530879(-)$1	261	78	103	21.4959
ccgccccACCCCAUCAUCUGUGGAC	chr19:45324522-45324756(+)$1	234	90	115	17.8396
CCUGGGCCACUAACCAUCCUGGCCC	chr11:2150506-2150711(-)$1	205	46	71	18.6098
GCCCUCCAGUCCUCUACCUCUGGCC	chr20:33298153-33298439(+)$1	286	258	283	17.9441
CCAAAGGUAAAAGUACUAAUCCCUU	chr12:69236969-69237199(+)$1	230	69	94	19.5539
CCUGGGCCACUAACCAUCCUGGCCC	chr11:2150484-2150696(-)$1	212	31	56	18.6098
AGGCUGGCCGGAGGGGAAGGGGCUA	chr11:2151296-2151500(-)$1	204	80	105	21.7280
gccccggccccccccuuccggccgc	chr11:2160377-2160593(-)$1	216	10	35	18.7929
CCUGGGCCACUAACCAUCCUGGCCC	chr11:2150466-2150684(-)$1	218	19	44	18.6098
UGACCUGGCAUUUUCUUGAGGCACC	chr17:41370069-41370324(+)$1	255	151	176	17.5994
CACCGCCUGUCCCCCUCCCGAGGCC	chr11:2160154-2160393(-)$1	239	186	211	19.3696
CCUGGGCCACUAACCAUCCUGGCCC	chr11:2150541-2150749(-)$1	208	84	109	18.6098
gguuguugaaaucuagauccaacau	chr2:37328665-37328927(-)$1	262	6	31	17.7821
AGGAGGUCCGAAGCUCUGUGGGACC	chr11:2151086-2151291(-)$1	205	20	45	22.2814
gacagugucuuacuauguugaccgu	chr7:116608286-116608592(+)$1	306	161	186	17.9276
CCUGGACACCCUCUCCCUCUGUCCA	chr1:160061115-160061385(-)$1	270	40	65	19.6119
GGCUGGCCGGAGGGGAAGGGGCUAG	chr11:2151336-2151543(-)$1	207	124	149	20.5937

#DB
(((((((.(..........).))))	chr11:62392536-62392798(-)$1	1	125	150	19.5327
))))((((............)))).	chr11:2160103-2160320(-)$1	1	113	138	19.3696
))))((((............)))).	chr11:2160141-2160354(-)$1	1	147	172	19.3696
..(((((.............)))))	chr4:152024372-152024655(+)$1	1	193	218	18.7167
))))((((............)))).	chr11:2160091-2160303(-)$1	1	96	121	19.3696
(....((((..........))))..	chr1:204521594-204521841(+)$1	1	66	91	18.1261
(((((..(...........)..)))	chr2:178086034-178086284(+)$1	1	34	59	21.1637
(((((((((..........))))))	chr11:2150533-2150741(-)$1	1	76	101	18.6098
(.....(((...........)))..	chr17:80708882-80709160(+)$1	1	117	142	19.4022
(((..((((...........)))).	chr11:2160231-2160449(-)$1	1	188	213	21.1450
(((((((((..........).))))	chr2:230765434-230765660(-)$1	1	171	196	17.5443
))(((((((...........)))))	chr11:2151318-2151522(-)$1	1	102	127	21.7280
.(((((((...........))))))	chr11:2151334-2151536(-)$1	1	117	142	20.5937
(((.(((((.............)))	chr2:231912017-231912308(+)$1	1	82	107	18.4651
.((((((............))))))	chr6:150045866-150046108(-)$1	1	33	58	17.7230
))(((((((...........)))))	chr11:2151300-2151507(-)$1	1	87	112	21.7280
....(((((..........))))).	chr4:152024314-152024569(+)$1	1	76	101	17.8331
))(((((((...........)))))	chr11:2151307-2151518(-)$1	1	98	123	21.7280
((((((((..............)))	chr19:58199910-58200165(+)$1	1	59	84	17.0803
(((..((((...........)))).	chr11:2160222-2160425(-)$1	1	164	189	21.6593
(((..((((...........)))).	chr11:2160225-2160431(-)$1	1	170	195	21.6593
(((((((((...........)))))	chr11:2151053-2151277(-)$1	1	6	31	22.2814
(((((((((..........))))))	chr11:2150518-2150730(-)$1	1	65	90	18.6098
.(((.(((............)))..	chr19:11257826-11258121(-)$1	1	144	169	20.8543
.(((((((..............)))	chr20:23614214-23614445(-)$1	1	193	218	19.3813
.(((((((...........))))))	chr11:2151380-2151590(-)$1	1	171	196	20.5937
(((((((((..........))))))	chr11:2150453-2150666(-)$1	1	1	26	18.6098
(((((((((...........)))))	chr11:2151091-2151299(-)$1	1	28	53	22.2814
(((.(((((...........)))))	chr16:10623885-10624187(-)$1	1	194	219	21.3298
((((..(((..........)))..)	chr11:65622487-65622756(-)$1	1	181	206	17.1351
(((...(((...........)))..	chr19:50024840-50025090(+)$1	1	148	173	21.0256
((((..((...........))..))	chr17:47128057-47128341(+)$1	1	4	29	18.6417
)(((.((((...........)))).	chr1:32832495-32832746(-)$1	1	219	244	21.1130
.((((((............))))))	chr6:150045908-150046137(-)$1	1	62	87	17.7230
(...(((((..........))))).	chr11:2160411-2160617(-)$1	1	34	59	18.7929
....(((((..........))))))	chr5:149781283-149781533(-)$1	1	147	172	18.1864
(.(((((.............)))))	chr6:31509086-31509339(-)$1	1	211	236	19.1190
(((((((............))))))	chr22:41677944-41678229(-)$1	1	244	269	20.5341
(...(((((..........))))).	chr11:2160417-2160621(-)$1	1	38	63	18.7929
))(((((((..........))))).	chr5:149781551-149781843(-)$1	1	177	202	17.4149
))))((((............)))).	chr11:2160083-2160286(-)$1	1	79	104	19.3696
..(((..............)))(.(	chr7:917488-917737(+)$1	1	91	116	15.4386
(((((((.............)))))	chr2:32535572-32535896(+)$1	1	161	186	19.9738
(...(((((..........))))).	chr11:2160393-2160610(-)$1	1	27	52	18.7929
))(((((((...........)))))	chr17:79530618-79530879(-)$1	1	78	103	21.4959
(((..((((..........))))..	chr19:45324522-45324756(+)$1	1	90	115	17.8396
(((((((((..........))))))	chr11:2150506-2150711(-)$1	1	46	71	18.6098
((...((((..........))))..	chr20:33298153-33298439(+)$1	1	258	283	17.9441
(((((((..............))))	chr12:69236969-69237199(+)$1	1	69	94	19.5539
(((((((((..........))))))	chr11:2150484-2150696(-)$1	1	31	56	18.6098
))(((((((...........)))))	chr11:2151296-2151500(-)$1	1	80	105	21.7280
(...(((((..........))))).	chr11:2160377-2160593(-)$1	1	10	35	18.7929
(((((((((..........))))))	chr11:2150466-2150684(-)$1	1	19	44	18.6098
(((..((.(..........).))..	chr17:41370069-41370324(+)$1	1	151	176	17.5994
))))((((............)))).	chr11:2160154-2160393(-)$1	1	186	211	19.3696
(((((((((..........))))))	chr11:2150541-2150749(-)$1	1	84	109	18.6098
((.(((((...........))))).	chr2:37328665-37328927(-)$1	1	6	31	17.7821
(((((((((...........)))))	chr11:2151086-2151291(-)$1	1	20	45	22.2814
(.(((((((..........)))...	chr7:116608286-116608592(+)$1	1	161	186	17.9276
..((((((...........))))))	chr1:160061115-160061385(-)$1	1	40	65	19.6119
.(((((((...........))))))	chr11:2151336-2151543(-)$1	1	124	149	20.5937

#PSSM
c : 0.18	d : 0.16	i : 0.13	: : 0.09	g : 0.09	= : 0.06	e : 0.06	$ : 0.03	b : 0.03	! : 0.03	h : 0.01	[ : 0.01	f : 0.01	# : 0.01	a : 0.01	G : 0.01	
d : 0.16	g : 0.16	i : 0.13	c : 0.13	= : 0.06	" : 0.06	$ : 0.04	f : 0.04	# : 0.03	e : 0.03	[ : 0.03	h : 0.01	: : 0.01	b : 0.01	G : 0.01	! : 0.01	
g : 0.24	d : 0.14	i : 0.13	c : 0.08	" : 0.08	= : 0.06	e : 0.06	f : 0.06	# : 0.03	$ : 0.03	h : 0.01	b : 0.01	: : 0.01	
g : 0.19	d : 0.13	i : 0.13	" : 0.09	! : 0.08	= : 0.06	f : 0.06	e : 0.04	c : 0.04	# : 0.03	$ : 0.03	[ : 0.03	h : 0.01	b : 0.01	
e : 0.19	g : 0.19	i : 0.13	d : 0.11	! : 0.11	= : 0.06	f : 0.04	[ : 0.03	" : 0.03	# : 0.01	$ : 0.01	h : 0.01	c : 0.01	
d : 0.22	e : 0.19	g : 0.19	i : 0.11	= : 0.06	! : 0.04	f : 0.04	$ : 0.01	h : 0.01	c : 0.01	" : 0.01	w : 0.01	b : 0.01	
d : 0.21	e : 0.19	g : 0.19	i : 0.11	c : 0.08	= : 0.06	f : 0.04	b : 0.03	! : 0.01	h : 0.01	w : 0.01	
d : 0.21	e : 0.16	g : 0.14	i : 0.11	c : 0.08	v : 0.04	u : 0.04	= : 0.04	[ : 0.03	w : 0.03	a : 0.01	h : 0.01	b : 0.01	f : 0.01	
u : 0.14	e : 0.14	d : 0.11	t : 0.11	i : 0.11	g : 0.08	c : 0.06	w : 0.06	a : 0.04	v : 0.04	= : 0.04	
s : 0.36	t : 0.36	u : 0.14	v : 0.06	w : 0.06	
s : 0.36	t : 0.36	u : 0.14	v : 0.06	w : 0.06	
s : 0.36	t : 0.36	u : 0.14	v : 0.06	w : 0.06	
s : 0.36	t : 0.36	u : 0.14	v : 0.06	w : 0.06	
s : 0.36	t : 0.36	u : 0.14	v : 0.06	w : 0.06	
s : 0.36	t : 0.36	u : 0.14	v : 0.06	w : 0.06	
s : 0.36	t : 0.36	u : 0.14	v : 0.06	w : 0.06	
s : 0.36	t : 0.36	u : 0.14	v : 0.06	w : 0.06	
s : 0.36	t : 0.36	u : 0.14	v : 0.06	w : 0.06	
s : 0.36	t : 0.36	u : 0.14	v : 0.06	w : 0.06	
t : 0.24	e : 0.13	i : 0.11	u : 0.09	a : 0.06	v : 0.06	g : 0.06	d : 0.04	f : 0.04	w : 0.04	c : 0.04	b : 0.01	
d : 0.19	e : 0.18	g : 0.16	i : 0.11	c : 0.09	] : 0.04	f : 0.04	w : 0.04	= : 0.04	2 : 0.01	v : 0.01	b : 0.01	
d : 0.21	e : 0.18	g : 0.18	i : 0.11	c : 0.09	= : 0.06	f : 0.04	2 : 0.03	w : 0.03	v : 0.01	b : 0.01	
d : 0.21	e : 0.19	g : 0.19	i : 0.13	= : 0.06	c : 0.04	f : 0.04	2 : 0.03	h : 0.01	a : 0.01	b : 0.01	3 : 0.01	
e : 0.19	g : 0.19	d : 0.18	i : 0.13	= : 0.06	3 : 0.04	f : 0.04	2 : 0.04	4 : 0.03	6 : 0.01	h : 0.01	[ : 0.01	
g : 0.19	3 : 0.13	i : 0.13	: : 0.09	e : 0.08	f : 0.08	= : 0.06	] : 0.06	2 : 0.04	d : 0.03	4 : 0.03	6 : 0.01	h : 0.01	

#score	1185.5041696550766
#seq	61
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_UTR_m2_run2.txt

#BEAR
ccc[eeeee"""ddddoooooodddd4444eeeee	chr2:240908924-240909162(-)$1	238	56	91	15.6507
ffffccc[ccceeeeeooooooeeeee22ccc22c	chr2:74093561-74093810(+)$1	249	145	180	12.8006
eee$$$$$bb[eeeeeooooooeeeeebbeeeee2	chr16:70191623-70191868(+)$1	245	205	240	11.7105
#bb!!ccc####ddddllldddd333ccc22bb>>	chr3:187896549-187896803(+)$1	254	33	68	11.3406
=======####eeeeecccmmmmccc22eeeee33	chr9:71398162-71398438(+)$1	276	153	188	9.5682
c####eeeee[cccooooooccc]eeeee22ccc3	chr1:113668728-113668970(+)$1	242	175	210	11.0042
ggggggg"""a[ddddqqqqqqqqdddda333ggg	chr19:54645433-54645714(+)$1	281	70	105	11.4106
gggggggggggggddddnnnnndddd22ggggggg	chr1:113668343-113668618(+)$1	275	68	103	12.0821
eeeeeggggggg!!bboooooobb4444ggggggg	chr1:91967074-91967358(+)$1	284	150	185	11.4139
ccc"""dddd!!a!!cccnnnnnccc22a22dddd	chr2:71214859-71215102(-)$1	243	202	237	10.5823
hhhhhhhh"""eeeeeooooooeeeee22hhhhhh	chr2:75884291-75884533(+)$1	242	87	122	11.2980
####ccc[a####ddddllldddd4444a333ccc	chr2:71213452-71213749(-)$1	297	170	205	14.0226
fffff[dddd[eeeeeooooooeeeee]dddd]ff	chr15:93564963-93565207(+)$1	244	201	236	12.2774
fff"""ccc!!dddd!!ammmma22dddd22ccc2	chr2:85547144-85547411(-)$1	267	88	123	11.3281
"ffffffbb[a[ddddnnnnndddd]a]bb]ffff	chr10:124147010-124147315(+)$1	305	232	267	11.2925
fffdddd"""ffffffooooooffffff333dddd	chr1:91966644-91966894(+)$1	250	37	72	11.8379
fffff!!ccc!!ccc[aooooooa]ccc333ccc]	chr5:167980267-167980520(-)$1	253	121	156	14.2047
FFFFFccc"""eeeeeooooooeeeeecccddddl	chr2:85547739-85548015(-)$1	276	71	106	11.2043
ggggccc$$$$$ddddpppppppdddd4444ccc3	chr2:74090889-74091138(+)$1	249	134	169	10.8168
eee[dddd####ddddnnnnndddd4444dddd22	chrX:70754038-70754274(+)$1	236	190	225	13.4960
gggggg"""bbeeeeennnnneeeee]bb333ggg	chr1:120262439-120262713(+)$1	274	59	94	12.4298
fffff[a[ccc[ddddnnnnndddd]ccc]a22ff	chr6:160166057-160166296(+)$1	239	126	161	12.1804
dd[cccdddd!!ddddnnnnndddd]dddd]ccc]	chr7:141463800-141464072(+)$1	272	157	192	12.3762
gdddd####cccddddccclllccc]dddd]ccc3	chr7:73110748-73111013(+)$1	265	78	113	10.5455
dddd[eeeee!!ddddoooooodddd22eeeee]d	chr2:85548342-85548574(-)$1	232	160	195	13.5064
=======!!ddddcccooooooccc]dddd4444=	chr18:77690179-77690416(-)$1	237	52	87	13.1457
ccc!!a"""ffffffnnnnnffffff22a22ccc3	chr2:85547835-85548095(-)$1	260	92	127	10.1575
cca[ccc!!a!!ddddoooooodddd22a22ccc]	chr2:32991435-32991698(+)$1	263	52	87	17.2659
[ccc!!bb####cccooooooccc333bb22ccce	chr16:70193520-70193762(+)$1	242	33	68	13.6360
eeeee[dddd[eeeeeooooooeeeee]dddd]ee	chr15:93565082-93565387(+)$1	305	82	117	12.2120
dd"""ffffff[ddddoooooodddd]ffffff33	chr5:167980552-167980797(-)$1	245	174	209	13.3325
ggggggg"""a[ddddqqqqqqqqdddda333ggg	chr19:54645329-54645588(+)$1	259	174	209	11.4106
[ddddccc"""eeeeeooooooeeeee]ccc]ddd	chr2:240675-240980(-)$1	305	79	114	13.5820
dddda!!ccc[cccddddllldddd]ccc22ccc2	chr2:74091132-74091402(+)$1	270	157	192	11.9264
e!!gggggggbbddddoooooodddd]bb333ggg	chr16:70191483-70191745(+)$1	262	67	102	14.5676
fffff[eeeee[ddddoooooodddd333eeeeef	chr16:70193756-70194026(+)$1	270	90	125	14.1157
eeeee!!a[dddd[ccclllcccdddd]a22eeee	chr3:187897475-187897752(+)$1	277	48	83	10.7682
"""dddd$$$$$eeeeennnnneeeeedddd333d	chr1:113668479-113668743(+)$1	264	117	152	10.5787
geeeee!!ccceeeeeooooooeeeee]ccc22ee	chr17:76818866-76819104(-)$1	238	115	150	12.7565
bb!!bb[ccc!!ddddoooooodddd]ccc]bb22	chr21:45937453-45937740(+)$1	287	49	84	14.1240
iiiiiiiibbffffffooooooffffff4444bb]	chr11:118321290-118321599(+)$1	309	256	291	11.0059
:ccc!!ffffffddddnnnnndddd333ffffff2	chr3:99569627-99569901(+)$1	274	99	134	10.9352
fff"""eeeeeeeeeeooooooeeeee666666ee	chr2:85548309-85548537(-)$1	228	23	58	11.2843
eedddd[a!!a[eeeeennnnneeeee]a22addd	chr3:187896407-187896661(+)$1	254	145	180	12.2820
dda[ggggggg[ddddnnnnndddd]ggggggga:	chr11:116739512-116739781(-)$1	269	106	141	11.0480
$$$$$bb!!ddddrrrrrrrrrdddd22bb333ee	chr12:95651917-95652162(+)$1	245	51	86	9.0467
gggggg!!bb!!ddddllldddd4444bb22gggg	chr3:187897248-187897475(+)$1	227	153	188	12.1402
:=============ddddmmmmdddd4444=====	chr20:30960186-30960433(+)$1	247	172	207	10.7634
cccddddccc!!ddddoooooodddd55555ccc]	chr12:53805695-53805987(+)$1	292	240	275	12.9427
b[bb!!ccc####cccooooooccc55555ccc22	chr18:32918446-32918691(-)$1	245	168	203	10.9559
####dddd$$$$$ddddnnnnndddd4444dddd6	chr11:116740644-116740886(-)$1	242	131	166	11.9682
ffdddd!!ccc####aooooooa4444ccc22ddd	chr3:185442178-185442398(-)$1	220	32	67	12.5196
[ccc[ccc[a[ddddnnnnndddd4444a]ccccc	chr5:167979532-167979789(-)$1	257	181	216	12.2478
fffff!!ccc!!ccc[aooooooa]ccc333ccc]	chr5:167980336-167980594(-)$1	258	195	230	14.2047
33ccceeeee"""ddddnnnnndddd4444eeeee	chr2:47140811-47141130(-)$1	319	273	308	12.2635
fff"""ccc!!dddd!!ammmma22dddd22ccc2	chr2:85547111-85547337(-)$1	226	14	49	11.3281
ccc!!ffffff[ddddoooooodddd]ffffff22	chr7:73108361-73108585(+)$1	224	23	58	13.4079

#otherMatches

#Seq PSSM
ggggagaggaagucugagauggcaggagagccuuu	chr2:240908924-240909162(-)$1	238	56	91	15.6507
CUGGAGAAGCUCUAUGUCACCUUGUAGGAAGCCAU	chr2:74093561-74093810(+)$1	249	145	180	12.8006
UUCAACCUUGCGGGCUGUGCUGAGUUCCAGAGAGC	chr16:70191623-70191868(+)$1	245	205	240	11.7105
ACAGACAUGAAAGCCAAAUUGGCGCAGUGGGUGAA	chr3:187896549-187896803(+)$1	254	33	68	11.3406
UAAGUAUGAAGGCAAUGUAUACCUGCUGAUUGUAA	chr9:71398162-71398438(+)$1	276	153	188	9.5682
GAAAUUUCUCACCAUGAAUUUGGAGGGAACCUACU	chr1:113668728-113668970(+)$1	242	175	210	11.0042
CCAGGGAACUGUGCUUUUCAUUGUAGGCCCCCUCC	chr19:54645433-54645714(+)$1	281	70	105	11.4106
AUGCUCUUUGAGUUGCAACAGGUGUAUUAUUUAAA	chr1:113668343-113668618(+)$1	275	68	103	12.0821
CUGUGGAUGUAACCCCUUAGCUGGCAUUUUGCAUC	chr1:91967074-91967358(+)$1	284	150	185	11.4139
GGGAAAAGGAGUGGUUUCUGGCUGAAUACUAUCUU	chr2:71214859-71215102(-)$1	243	202	237	10.5823
aaggggcugucUUUAGGAUUAUCUGAAUGGGCUUU	chr2:75884291-75884533(+)$1	242	87	122	11.2980
cuaucuuccuaaaaugcauugcauaguugaucaag	chr2:71213452-71213749(-)$1	297	170	205	14.0226
aaguauucuggagcuuuguuaugaguugcagguua	chr15:93564963-93565207(+)$1	244	201	236	12.2774
UGCUAUAGAUUGACACCCUCCUGCCUGUUUUUCUC	chr2:85547144-85547411(-)$1	267	88	123	11.3281
ucacucacucugcuagaaugacugggacagcuggg	chr10:124147010-124147315(+)$1	305	232	267	11.2925
GCCCGAGGGAAGCCGGUCCUUCCCGGCUGAGCUCG	chr1:91966644-91966894(+)$1	250	37	72	11.8379
GGAUUCUGCAGACAAGCUGAGUUGGUUGAAAUGCU	chr5:167980267-167980520(-)$1	253	121	156	14.2047
ACCAUCCAAAUGGAAAUUCCCCUUUCUUGGUGUCU	chr2:85547739-85548015(-)$1	276	71	106	11.2043
gagaagcuucucacauuccagccauguucauguuu	chr2:74090889-74091138(+)$1	249	134	169	10.8168
GAAAAUACGAAAACAACCAAAUUGUAGGAGUGUCC	chrX:70754038-70754274(+)$1	236	190	225	13.4960
aauggaucugaggagccaugugcuccaucucuuuu	chr1:120262439-120262713(+)$1	274	59	94	12.4298
AGAUAGAGUGUGAAUAGAAGGUGUUGAUGGUAAUA	chr6:160166057-160166296(+)$1	239	126	161	12.1804
CAUGAUGGGACUCACCGAGGGGGUGUUCCUGAUUC	chr7:141463800-141464072(+)$1	272	157	192	12.3762
CUAUUCAAAAAGUAGGGGUAGUGCCACCUAUCUUG	chr7:73110748-73111013(+)$1	265	78	113	10.5455
UUUAUGAAGGUAAGGAAUGAACUCCUACCCUUCUU	chr2:85548342-85548574(-)$1	232	160	195	13.5064
aaaaguuuuacuagauguaagaaucuugguugaug	chr18:77690179-77690416(-)$1	237	52	87	13.1457
CAAAUCCAUGGCUUUUUCUCAAAGCUUAGUCUUGU	chr2:85547835-85548095(-)$1	260	92	127	10.1575
cacuguaggguuauuaauugucuaauuucaauauu	chr2:32991435-32991698(+)$1	263	52	87	17.2659
GUCUAGUGUCCAAGCAUCUUAGCUGUUCAAGAGGA	chr16:70193520-70193762(+)$1	242	33	68	13.6360
aaguauucuggagcuuuguuaugaguugcagguua	chr15:93565082-93565387(+)$1	305	82	117	12.2120
UGCUCCUGAGACAGUCAUACAGGACUUUCUCAGUU	chr5:167980552-167980797(-)$1	245	174	209	13.3325
CCAGGGAACUGUGCUUUUCAUUGUAGGCCCCCUCC	chr19:54645329-54645588(+)$1	259	174	209	11.4106
uguuugcuugcuguuuguuuagagauauggcugga	chr2:240675-240980(-)$1	305	79	114	13.5820
ucaaguacaaccaggguugacaaccacugCAUUGG	chr2:74091132-74091402(+)$1	270	157	192	11.9264
AAAGGGAAAAACCAUAUUGCCUUGUGUGUUGCUUU	chr16:70191483-70191745(+)$1	262	67	102	14.5676
ACUCUUGUGAAUGGGUGACUGGACUUGGCUUUACA	chr16:70193756-70194026(+)$1	270	90	125	14.1157
GAGAGCAGUAGUUAGCUUGCAGCAGCUUCCCCUCU	chr3:187897475-187897752(+)$1	277	48	83	10.7682
UUCUAUUAGGUGUGCUAUAUCUUGGCAAAUAUUCC	chr1:113668479-113668743(+)$1	264	117	152	10.5787
UGGAGGGAGUGGGUGCACCGGCGCACUGCGCAGCC	chr17:76818866-76819104(-)$1	238	115	150	12.7565
GUGUGUGCUCCUUGUCUGACUUGAUAUGAGAACUA	chr21:45937453-45937740(+)$1	287	49	84	14.1240
UUUCUUGACUGGUUGAAUUUCAUUAACUAUUUGGC	chr11:118321290-118321599(+)$1	309	256	291	11.0059
UGGUCAGCUCUUGGAUUUUCUGUCUUUGAAGGGUG	chr3:99569627-99569901(+)$1	274	99	134	10.9352
AAGUCUGAAGAAAGGACCAUGCUUCUUAUAUUAUC	chr2:85548309-85548537(-)$1	228	23	58	11.2843
CUGUCUAGGAUGUUGUGAUCGACACAGGAAACAGA	chr3:187896407-187896661(+)$1	254	145	180	12.2820
AUGUAAUAAAAAAGGUGUAGUGCCUCUUUUAUUCA	chr11:116739512-116739781(-)$1	269	106	141	11.0480
AGAAGGUCAAUGAAGUGUCUUAUCGUCUACAUAUA	chr12:95651917-95652162(+)$1	245	51	86	9.0467
CUCCAUUUCUCAUCCUGCCAGGAAUCCAGCCGUGG	chr3:187897248-187897475(+)$1	227	153	188	12.1402
UAGUGAAUAAUGGCUACAUUUUUGUACUUCGUUAU	chr20:30960186-30960433(+)$1	247	172	207	10.7634
GCUGGAGAGUCAAAGGCAUCUCCCUUCAUUAGCUG	chr12:53805695-53805987(+)$1	292	240	275	12.9427
AAGUUUUAGAAAAGUCUUAAAUGACACUUGCUGUU	chr18:32918446-32918691(-)$1	245	168	203	10.9559
GAUAGUAUUCACAAGGCACAAAGCCUGCUCGUACC	chr11:116740644-116740886(-)$1	242	131	166	11.9682
augaaggagcugaaucaggaaaguuaaagcaacuu	chr3:185442178-185442398(-)$1	220	32	67	12.5196
UUGGACCAGACUCCGUUCCCUGGAAUACUGUGGCC	chr5:167979532-167979789(-)$1	257	181	216	12.2478
GGAUUCUGCAGACAAGCUGAGUUGGUUGAAAUGCU	chr5:167980336-167980594(-)$1	258	195	230	14.2047
UUGUGAGGGCUGUCUCAAGGUAUGGGUUGUGCCCU	chr2:47140811-47141130(-)$1	319	273	308	12.2635
UGCUAUAGAUUGACACCCUCCUGCCUGUUUUUCUC	chr2:85547111-85547337(-)$1	226	14	49	11.3281
AGCAACUGCUGAAGCCUGCCCCGGCUGCAGCGGGG	chr7:73108361-73108585(+)$1	224	23	58	13.4079

#DB
(((.(((((...((((......))))....)))))	chr2:240908924-240909162(-)$1	1	56	91	15.6507
))))(((.((((((((......)))))..)))..)	chr2:74093561-74093810(+)$1	1	145	180	12.8006
(((.....((.(((((......)))))))))))).	chr16:70191623-70191868(+)$1	1	205	240	11.7105
.((..(((....((((...))))...)))..))..	chr3:187896549-187896803(+)$1	1	33	68	11.3406
(((((((....((((((((....)))..)))))..	chr9:71398162-71398438(+)$1	1	153	188	9.5682
(....(((((.(((......))).)))))..))).	chr1:113668728-113668970(+)$1	1	175	210	11.0042
(((((((...(.((((........)))))...)))	chr19:54645433-54645714(+)$1	1	70	105	11.4106
(((((((((((((((((.....))))..)))))))	chr1:113668343-113668618(+)$1	1	68	103	12.0821
)))))(((((((..((......))....)))))))	chr1:91967074-91967358(+)$1	1	150	185	11.4139
(((...((((..(..(((.....)))..)..))))	chr2:71214859-71215102(-)$1	1	202	237	10.5823
((((((((...(((((......)))))..))))))	chr2:75884291-75884533(+)$1	1	87	122	11.2980
....(((.(....((((...))))....)...)))	chr2:71213452-71213749(-)$1	1	170	205	14.0226
(((((.((((.(((((......))))).)))).))	chr15:93564963-93565207(+)$1	1	201	236	12.2774
(((...(((..((((..(....)..))))..))).	chr2:85547144-85547411(-)$1	1	88	123	11.3281
.((((((((.(.((((.....)))).).)).))))	chr10:124147010-124147315(+)$1	1	232	267	11.2925
(((((((...((((((......))))))...))))	chr1:91966644-91966894(+)$1	1	37	72	11.8379
(((((..(((..(((.(......).)))...))).	chr5:167980267-167980520(-)$1	1	121	156	14.2047
((((((((...(((((......))))))))((((.	chr2:85547739-85548015(-)$1	1	71	106	11.2043
(((((((.....((((.......))))....))).	chr2:74090889-74091138(+)$1	1	134	169	10.8168
(((.((((....((((.....))))....))))..	chrX:70754038-70754274(+)$1	1	190	225	13.4960
((((((...(((((((.....))))).))...)))	chr1:120262439-120262713(+)$1	1	59	94	12.4298
(((((.(.(((.((((.....)))).))).)..))	chr6:160166057-160166296(+)$1	1	126	161	12.1804
((.(((((((..((((.....)))).)))).))).	chr7:141463800-141464072(+)$1	1	157	192	12.3762
(((((....((((((((((...))).)))).))).	chr7:73110748-73111013(+)$1	1	78	113	10.5455
((((.(((((..((((......))))..))))).)	chr2:85548342-85548574(-)$1	1	160	195	13.5064
(((((((..(((((((......))).))))....)	chr18:77690179-77690416(-)$1	1	52	87	13.1457
(((..(...((((((.....))))))..)..))).	chr2:85547835-85548095(-)$1	1	92	127	10.1575
(((.(((..(..((((......))))..)..))).	chr2:32991435-32991698(+)$1	1	52	87	17.2659
.(((..((....(((......)))...))..))))	chr16:70193520-70193762(+)$1	1	33	68	13.6360
(((((.((((.(((((......))))).)))).))	chr15:93565082-93565387(+)$1	1	82	117	12.2120
((...((((((.((((......)))).))))))..	chr5:167980552-167980797(-)$1	1	174	209	13.3325
(((((((...(.((((........)))))...)))	chr19:54645329-54645588(+)$1	1	174	209	11.4106
.(((((((...(((((......))))).))).)))	chr2:240675-240980(-)$1	1	79	114	13.5820
(((((..(((.(((((((...)))).)))..))).	chr2:74091132-74091402(+)$1	1	157	192	11.9264
(..(((((((((((((......)))).))...)))	chr16:70191483-70191745(+)$1	1	67	102	14.5676
(((((.(((((.((((......))))...))))))	chr16:70193756-70194026(+)$1	1	90	125	14.1157
(((((..(.((((.(((...))))))).)..))))	chr3:187897475-187897752(+)$1	1	48	83	10.7682
...((((.....(((((.....)))))))))...)	chr1:113668479-113668743(+)$1	1	117	152	10.5787
)(((((..((((((((......))))).)))..))	chr17:76818866-76819104(-)$1	1	115	150	12.7565
((..((.(((..((((......)))).))).))..	chr21:45937453-45937740(+)$1	1	49	84	14.1240
((((((((((((((((......))))))....)).	chr11:118321290-118321599(+)$1	1	256	291	11.0059
.(((..((((((((((.....))))...)))))).	chr3:99569627-99569901(+)$1	1	99	134	10.9352
(((...((((((((((......)))))......))	chr2:85548309-85548537(-)$1	1	23	58	11.2843
))((((.(..(.(((((.....))))).)..))))	chr3:187896407-187896661(+)$1	1	145	180	12.2820
))(.(((((((.((((.....)))).)))))))).	chr11:116739512-116739781(-)$1	1	106	141	11.0480
.....((..((((.........))))..))...))	chr12:95651917-95652162(+)$1	1	51	86	9.0467
((((((..((..((((...))))....))..))))	chr3:187897248-187897475(+)$1	1	153	188	12.1402
.(((((((((((((((((....))))....)))))	chr20:30960186-30960433(+)$1	1	172	207	10.7634
((((((((((..((((......)))).....))).	chr12:53805695-53805987(+)$1	1	240	275	12.9427
(.((..(((....(((......))).....)))..	chr18:32918446-32918691(-)$1	1	168	203	10.9559
....((((.....((((.....))))....)))).	chr11:116740644-116740886(-)$1	1	131	166	11.9682
))((((..(((....(......)....)))..)))	chr3:185442178-185442398(-)$1	1	32	67	12.5196
.(((.(((.(.((((.....))))....).)))))	chr5:167979532-167979789(-)$1	1	181	216	12.2478
(((((..(((..(((.(......).)))...))).	chr5:167980336-167980594(-)$1	1	195	230	14.2047
..)))(((((...((((.....))))....)))))	chr2:47140811-47141130(-)$1	1	273	308	12.2635
(((...(((..((((..(....)..))))..))).	chr2:85547111-85547337(-)$1	1	14	49	11.3281
(((..((((((.((((......)))).))))))..	chr7:73108361-73108585(+)$1	1	23	58	13.4079

#PSSM
f : 0.19	g : 0.14	c : 0.12	e : 0.12	d : 0.08	# : 0.05	[ : 0.05	= : 0.03	" : 0.03	b : 0.03	: : 0.03	h : 0.01	F : 0.01	i : 0.01	$ : 0.01	3 : 0.01	
f : 0.21	c : 0.15	e : 0.12	d : 0.12	g : 0.10	= : 0.05	# : 0.05	b : 0.03	h : 0.01	F : 0.01	! : 0.01	" : 0.01	i : 0.01	$ : 0.01	[ : 0.01	3 : 0.01	
f : 0.19	c : 0.15	e : 0.10	g : 0.10	d : 0.10	= : 0.05	# : 0.05	b : 0.03	a : 0.03	" : 0.03	! : 0.03	h : 0.01	F : 0.01	[ : 0.01	i : 0.01	$ : 0.01	
d : 0.15	f : 0.12	g : 0.12	" : 0.08	c : 0.08	[ : 0.07	! : 0.07	e : 0.07	= : 0.05	# : 0.05	$ : 0.03	h : 0.01	F : 0.01	i : 0.01	b : 0.01	
d : 0.15	g : 0.12	c : 0.10	! : 0.10	f : 0.10	e : 0.08	" : 0.08	= : 0.05	$ : 0.03	[ : 0.03	# : 0.01	h : 0.01	F : 0.01	a : 0.01	b : 0.01	i : 0.01	
c : 0.15	g : 0.14	d : 0.12	! : 0.12	e : 0.08	" : 0.07	[ : 0.07	= : 0.05	f : 0.05	b : 0.03	$ : 0.01	h : 0.01	# : 0.01	a : 0.01	i : 0.01	
c : 0.19	d : 0.15	! : 0.12	e : 0.10	g : 0.10	f : 0.07	= : 0.05	" : 0.03	b : 0.03	[ : 0.03	$ : 0.01	h : 0.01	a : 0.01	# : 0.01	i : 0.01	
c : 0.21	e : 0.10	d : 0.10	! : 0.10	" : 0.08	g : 0.07	[ : 0.05	$ : 0.05	f : 0.05	# : 0.03	b : 0.03	a : 0.03	h : 0.01	i : 0.01	= : 0.01	
c : 0.21	" : 0.14	e : 0.10	# : 0.08	b : 0.07	g : 0.07	d : 0.07	! : 0.07	$ : 0.05	f : 0.05	[ : 0.03	a : 0.01	= : 0.01	
c : 0.17	" : 0.12	d : 0.12	# : 0.10	e : 0.08	b : 0.07	g : 0.07	f : 0.07	! : 0.05	$ : 0.05	a : 0.03	[ : 0.01	= : 0.01	
! : 0.19	[ : 0.10	# : 0.10	f : 0.10	" : 0.08	c : 0.08	a : 0.07	g : 0.05	$ : 0.05	d : 0.05	b : 0.03	e : 0.03	= : 0.01	
e : 0.19	[ : 0.15	! : 0.15	# : 0.10	d : 0.10	f : 0.07	c : 0.05	$ : 0.05	" : 0.03	g : 0.03	b : 0.01	= : 0.01	
d : 0.47	e : 0.22	c : 0.08	# : 0.05	f : 0.05	g : 0.01	! : 0.01	a : 0.01	= : 0.01	$ : 0.01	" : 0.01	
d : 0.49	e : 0.22	c : 0.12	f : 0.05	! : 0.03	[ : 0.01	r : 0.01	= : 0.01	# : 0.01	
d : 0.52	e : 0.22	c : 0.10	f : 0.05	o : 0.01	b : 0.01	! : 0.01	r : 0.01	# : 0.01	
d : 0.47	e : 0.22	c : 0.07	o : 0.03	! : 0.03	f : 0.03	[ : 0.03	n : 0.03	b : 0.01	r : 0.01	a : 0.01	
o : 0.45	n : 0.15	d : 0.10	c : 0.07	l : 0.03	q : 0.03	! : 0.03	a : 0.03	e : 0.03	p : 0.01	r : 0.01	
o : 0.49	n : 0.24	l : 0.07	c : 0.05	q : 0.03	a : 0.03	d : 0.03	p : 0.01	r : 0.01	
o : 0.49	n : 0.26	l : 0.08	m : 0.05	c : 0.03	q : 0.03	p : 0.01	r : 0.01	
o : 0.49	n : 0.26	m : 0.07	l : 0.07	d : 0.03	q : 0.03	p : 0.01	r : 0.01	
o : 0.47	n : 0.22	d : 0.07	m : 0.07	c : 0.03	q : 0.03	l : 0.03	p : 0.01	f : 0.01	r : 0.01	
o : 0.45	d : 0.19	n : 0.10	m : 0.07	c : 0.05	q : 0.03	p : 0.01	e : 0.01	l : 0.01	f : 0.01	r : 0.01	
d : 0.43	e : 0.21	c : 0.10	a : 0.05	f : 0.05	q : 0.03	o : 0.03	m : 0.01	b : 0.01	n : 0.01	p : 0.01	
d : 0.43	e : 0.21	c : 0.10	f : 0.05	q : 0.03	2 : 0.03	a : 0.03	4 : 0.03	3 : 0.01	] : 0.01	b : 0.01	
d : 0.43	e : 0.22	c : 0.08	4 : 0.08	f : 0.05	3 : 0.03	2 : 0.03	] : 0.03	
d : 0.35	e : 0.22	] : 0.12	4 : 0.10	c : 0.07	3 : 0.05	f : 0.05	5 : 0.01	
e : 0.21	4 : 0.17	d : 0.15	2 : 0.12	c : 0.08	] : 0.08	3 : 0.05	f : 0.03	5 : 0.03	a : 0.01	g : 0.01	
4 : 0.15	2 : 0.15	c : 0.14	d : 0.14	] : 0.12	b : 0.08	f : 0.07	3 : 0.03	5 : 0.03	e : 0.01	6 : 0.01	g : 0.01	
a : 0.15	c : 0.14	d : 0.14	4 : 0.12	b : 0.12	3 : 0.07	e : 0.05	g : 0.05	f : 0.05	2 : 0.03	5 : 0.03	6 : 0.01	
2 : 0.21	3 : 0.14	d : 0.12	4 : 0.10	c : 0.10	e : 0.07	g : 0.05	f : 0.05	b : 0.03	] : 0.03	5 : 0.03	h : 0.01	6 : 0.01	
2 : 0.22	3 : 0.15	e : 0.10	d : 0.10	c : 0.08	] : 0.07	g : 0.05	4 : 0.05	f : 0.05	h : 0.01	a : 0.01	6 : 0.01	= : 0.01	5 : 0.01	
c : 0.28	e : 0.12	3 : 0.12	d : 0.12	g : 0.07	f : 0.07	2 : 0.05	b : 0.03	4 : 0.03	h : 0.01	] : 0.01	6 : 0.01	a : 0.01	= : 0.01	
c : 0.28	g : 0.14	d : 0.14	e : 0.12	f : 0.07	2 : 0.05	b : 0.05	] : 0.03	3 : 0.03	h : 0.01	4 : 0.01	6 : 0.01	= : 0.01	
c : 0.26	e : 0.15	g : 0.12	d : 0.12	2 : 0.08	f : 0.07	3 : 0.05	> : 0.01	h : 0.01	] : 0.01	4 : 0.01	b : 0.01	a : 0.01	= : 0.01	
2 : 0.15	e : 0.14	g : 0.12	d : 0.12	3 : 0.10	] : 0.10	f : 0.07	c : 0.05	= : 0.03	> : 0.01	h : 0.01	l : 0.01	: : 0.01	6 : 0.01	

#score	694.3067595242102
#seq	57
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_CDS_m1_run1.txt

#BEAR
gggg!!bb[ffffff!!gggggggnnnnnggggggg4444	chr13:45911564-45911767(-)$1	203	27	67	27.3657
dd[a!!bb!!ggggggg[bb[bboooooobb]bbgggggg	chr12:9229299-9229540(-)$1	241	19	59	14.5732
gggg!!bb[ffffff!!gggggggnnnnnggggggg4444	chr13:45911567-45911776(-)$1	209	36	76	27.3657
gggg!!bb[ffffff!!gggggggnnnnnggggggg4444	chr13:45911542-45911754(-)$1	212	14	54	27.3657
eeeee[bb!!==========rrrrrrrrr==========]	chr3:58106872-58107167(+)$1	295	75	115	15.4432
ggggggg####==========[bbmmmmbb]=========	chr2:216283881-216284126(-)$1	245	86	126	14.6485
""a[ggggggg"""bb!!ffffffnnnnnffffff333bb	chr22:20113864-20114092(+)$1	228	41	81	21.8891
gggg!!bb[ffffff!!gggggggnnnnnggggggg4444	chr13:45911554-45911761(-)$1	207	21	61	27.3657
c[bb[ffffff!!ccc"""eeeeennnnneeeeeccc22f	chr16:67697490-67697776(-)$1	286	222	262	17.5858
gggg!!bb[ffffff!!gggggggnnnnnggggggg4444	chr13:45911586-45911792(-)$1	206	52	92	27.3657
ffff!!bb[ffffff!!gggggggnnnnnggggggg4444	chr13:45911523-45911742(-)$1	219	2	42	26.6041
""a[ggggggg"""bb!!ffffffnnnnnffffff333bb	chr22:20113823-20114054(+)$1	231	82	122	21.8891
""a[ggggggg"""bb!!ffffffnnnnnffffff333bb	chr22:20113854-20114064(+)$1	210	51	91	21.8891
gggg!!bb[ffffff!!gggggggnnnnnggggggg4444	chr13:45911576-45911786(-)$1	210	46	86	27.3657
eeeeccc[eeeee####gggggggnnnnngggggggeeee	chr11:126146110-126146393(+)$1	283	138	178	18.9649

#otherMatches

#Seq PSSM
AUCCACUGAUAGACCUUGAACAAUUUACUGUUGUUCUUUU	chr13:45911564-45911767(-)$1	203	27	67	27.3657
CCGCAAUGCCCUGUUUUGCCUGGAGUCAGCCUGGAAGACA	chr12:9229299-9229540(-)$1	241	19	59	14.5732
AUCCACUGAUAGACCUUGAACAAUUUACUGUUGUUCUUUU	chr13:45911567-45911776(-)$1	209	36	76	27.3657
AUCCACUGAUAGACCUUGAACAAUUUACUGUUGUUCUUUU	chr13:45911542-45911754(-)$1	212	14	54	27.3657
AGCUUGUGUUUCUUUUCCAGGGGUGGAAGUUGGGAAGGAU	chr3:58106872-58107167(+)$1	295	75	115	15.4432
GGUGUCAGAUACCAGUGCUACUGCUAUGGCCGUGGCAUUG	chr2:216283881-216284126(-)$1	245	86	126	14.6485
UGGGUUGGGGGGCUUCUUUGCAGACUCACUCUGCAUCUGA	chr22:20113864-20114092(+)$1	228	41	81	21.8891
AUCCACUGAUAGACCUUGAACAAUUUACUGUUGUUCUUUU	chr13:45911554-45911761(-)$1	207	21	61	27.3657
UCUCACUGCCCGACACUCAGGGUGAAGGACACCUGUGGAG	chr16:67697490-67697776(-)$1	286	222	262	17.5858
AUCCACUGAUAGACCUUGAACAAUUUACUGUUGUUCUUUU	chr13:45911586-45911792(-)$1	206	52	92	27.3657
AUCCACUGAUAGACCUUGAACAAUUUACUGUUGUUCUUUU	chr13:45911523-45911742(-)$1	219	2	42	26.6041
UGGGUUGGGGGGCUUCUUUGCAGACUCACUCUGCAUCUGA	chr22:20113823-20114054(+)$1	231	82	122	21.8891
UGGGUUGGGGGGCUUCUUUGCAGACUCACUCUGCAUCUGA	chr22:20113854-20114064(+)$1	210	51	91	21.8891
AUCCACUGAUAGACCUUGAACAAUUUACUGUUGUUCUUUU	chr13:45911576-45911786(-)$1	210	46	86	27.3657
AUGCUGUUUCUGCAGUUCGUAACCGCACUGGUUGUGGCAG	chr11:126146110-126146393(+)$1	283	138	178	18.9649

#DB
((((..((.((((((..(((((((.....)))))))....	chr13:45911564-45911767(-)$1	1	27	67	27.3657
((.(..((..(((((((.((.((......)).))))))))	chr12:9229299-9229540(-)$1	1	19	59	14.5732
((((..((.((((((..(((((((.....)))))))....	chr13:45911567-45911776(-)$1	1	36	76	27.3657
((((..((.((((((..(((((((.....)))))))....	chr13:45911542-45911754(-)$1	1	14	54	27.3657
(((((.((..((((((((((.........)))))))))).	chr3:58106872-58107167(+)$1	1	75	115	15.4432
(((((((....((((((((((.((....)).)))))))))	chr2:216283881-216284126(-)$1	1	86	126	14.6485
..(.(((((((...((..((((((.....))))))...))	chr22:20113864-20114092(+)$1	1	41	81	21.8891
((((..((.((((((..(((((((.....)))))))....	chr13:45911554-45911761(-)$1	1	21	61	27.3657
(.((.((((((..(((...(((((.....))))))))..)	chr16:67697490-67697776(-)$1	1	222	262	17.5858
((((..((.((((((..(((((((.....)))))))....	chr13:45911586-45911792(-)$1	1	52	92	27.3657
((((..((.((((((..(((((((.....)))))))....	chr13:45911523-45911742(-)$1	1	2	42	26.6041
..(.(((((((...((..((((((.....))))))...))	chr22:20113823-20114054(+)$1	1	82	122	21.8891
..(.(((((((...((..((((((.....))))))...))	chr22:20113854-20114064(+)$1	1	51	91	21.8891
((((..((.((((((..(((((((.....)))))))....	chr13:45911576-45911786(-)$1	1	46	86	27.3657
(((((((.(((((....(((((((.....)))))))))))	chr11:126146110-126146393(+)$1	1	138	178	18.9649

#PSSM
g : 0.46	" : 0.20	e : 0.13	d : 0.06	c : 0.06	f : 0.06	
g : 0.46	" : 0.20	e : 0.13	d : 0.06	[ : 0.06	f : 0.06	
g : 0.46	a : 0.20	e : 0.13	[ : 0.06	b : 0.06	f : 0.06	
g : 0.46	[ : 0.20	e : 0.13	a : 0.06	b : 0.06	f : 0.06	
! : 0.53	g : 0.26	e : 0.06	[ : 0.06	c : 0.06	
! : 0.53	g : 0.26	[ : 0.06	f : 0.06	c : 0.06	
b : 0.60	g : 0.26	f : 0.06	c : 0.06	
b : 0.60	g : 0.20	# : 0.06	f : 0.06	[ : 0.06	
[ : 0.46	g : 0.20	! : 0.13	# : 0.06	f : 0.06	e : 0.06	
f : 0.53	g : 0.20	! : 0.13	# : 0.06	e : 0.06	
f : 0.53	g : 0.26	= : 0.06	# : 0.06	e : 0.06	
f : 0.46	" : 0.20	= : 0.13	g : 0.06	! : 0.06	e : 0.06	
f : 0.46	" : 0.20	= : 0.13	g : 0.06	! : 0.06	e : 0.06	
f : 0.46	" : 0.20	= : 0.13	g : 0.06	c : 0.06	# : 0.06	
f : 0.46	b : 0.20	= : 0.13	g : 0.06	c : 0.06	# : 0.06	
! : 0.46	b : 0.20	= : 0.13	g : 0.06	c : 0.06	# : 0.06	
! : 0.66	= : 0.13	g : 0.06	" : 0.06	# : 0.06	
g : 0.53	! : 0.20	= : 0.13	[ : 0.06	" : 0.06	
g : 0.53	f : 0.20	= : 0.13	b : 0.06	" : 0.06	
g : 0.53	f : 0.20	= : 0.13	b : 0.06	e : 0.06	
g : 0.53	f : 0.20	[ : 0.06	r : 0.06	= : 0.06	e : 0.06	
g : 0.53	f : 0.20	b : 0.06	r : 0.06	[ : 0.06	e : 0.06	
g : 0.53	f : 0.20	b : 0.13	r : 0.06	e : 0.06	
g : 0.53	f : 0.20	o : 0.06	r : 0.06	b : 0.06	e : 0.06	
n : 0.79	o : 0.06	r : 0.06	m : 0.06	
n : 0.79	o : 0.06	r : 0.06	m : 0.06	
n : 0.79	o : 0.06	r : 0.06	m : 0.06	
n : 0.79	o : 0.06	r : 0.06	m : 0.06	
n : 0.79	o : 0.06	r : 0.06	b : 0.06	
g : 0.53	f : 0.20	b : 0.13	= : 0.06	e : 0.06	
g : 0.53	f : 0.20	b : 0.06	= : 0.06	] : 0.06	e : 0.06	
g : 0.53	f : 0.20	= : 0.13	] : 0.06	e : 0.06	
g : 0.53	f : 0.20	= : 0.13	b : 0.06	e : 0.06	
g : 0.53	f : 0.20	= : 0.13	b : 0.06	e : 0.06	
g : 0.60	f : 0.20	= : 0.13	c : 0.06	
g : 0.60	3 : 0.20	= : 0.13	c : 0.06	
4 : 0.46	3 : 0.20	= : 0.13	g : 0.06	c : 0.06	e : 0.06	
4 : 0.46	3 : 0.20	= : 0.13	g : 0.06	2 : 0.06	e : 0.06	
4 : 0.46	b : 0.20	= : 0.13	g : 0.06	2 : 0.06	e : 0.06	
4 : 0.46	b : 0.20	g : 0.06	] : 0.06	= : 0.06	f : 0.06	e : 0.06	

#score	337.6820561382867
#seq	15
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_transcript_m2_run2.txt

#BEAR
ggg"""a[ddddmmmmdddd]a]ggggg	chr11:61583080-61583361(+)$1	281	229	257	11.5201
eeeee!!eeeeemmmmeeeee333eeee	chr2:239005724-239005962(+)$1	238	12	40	9.7132
ggggggg[cccoooooocccggggggge	chr12:124995371-124995611(-)$1	240	150	178	10.0343
[cccccc[a[bbmmmmbb22a]ccc]cc	chr1:1982809-1983129(+)$1	320	46	74	11.8800
$$$$$gggggggmmmmgggggggeeeee	chr4:2258827-2259063(-)$1	236	9	37	10.2527
""eeeeea!!bbmmmmbb22a]eeeeed	chr13:113351683-113351925(+)$1	242	102	130	11.1994
ffff[ccc!!bbmmmmbb22ccc]ffff	chr14:95777408-95777663(-)$1	255	139	167	11.5948
ggggggg!!cccmmmmccc]ggggggg]	chr17:42276515-42276754(-)$1	239	131	159	13.4003
e[a[dddd[cccmmmmccc]dddd]a]e	chr6:16761010-16761310(-)$1	300	65	93	11.1512
ccggggggg!!ammmma22ggggggg]c	chr2:241902103-241902337(-)$1	234	75	103	12.1298
ggggggccc[bbmmmmbb]ccc]ggggg	chr1:154976630-154976873(+)$1	243	182	210	11.8854
ggg!!a[bb[bbmmmmbb22bb]a]ggg	chr2:240017427-240017694(-)$1	267	129	157	11.3594
============mmmm============	chr11:63835155-63835398(-)$1	243	161	189	13.5223
===========ammmma]==========	chr19:1585103-1585472(-)$1	369	0	28	13.3638
!!a!!gggggggmmmmggggggg22a22	chr19:56155279-56155543(+)$1	264	69	97	11.2549
========[aooooooa==========d	chr7:139404637-139404928(-)$1	291	144	172	10.8890
ffff$$$$$cccmmmmccc333ffffff	chr10:103599068-103599306(-)$1	238	202	230	11.3876
ff####bb[cccmmmmccc]bb4444ff	chr19:1172974-1173230(-)$1	256	4	32	10.8836
hhhhh"""ddddmmmmdddd333hhhhh	chr2:241450390-241450665(-)$1	275	195	223	9.7690
gggggg[cccooooooccc]gggggggd	chr2:241497013-241497282(-)$1	269	123	151	10.1979
fffeeeee[cccmmmmccc]eeeee444	chr1:2163352-2163599(+)$1	247	18	46	11.2033
###iiiiiiiiimmmmiiiiiiiii888	chrX:40028948-40029304(-)$1	356	163	191	11.1259
ccc[gggggggooooooggggggg]ccc	chr11:125932137-125932528(-)$1	391	39	67	9.3958
fffff"""ddddmmmmdddd22ffffff	chr21:46854750-46855022(+)$1	272	180	208	10.3471
fccc"""eeeeemmmmeeeee333ccc]	chr6:7910200-7910486(-)$1	286	188	216	10.4576
"""dddd!!cccmmmmccc22dddd444	chr14:105339766-105340051(+)$1	285	231	259	11.6987
c===========mmmm===========c	chr16:696871-697150(+)$1	279	166	194	13.4133
:===========mmmm===========f	chr22:47522608-47522857(+)$1	249	33	61	12.3946
eee[iiiiiiiiillliiiiiiiiieee	chr20:62566610-62566873(+)$1	263	174	202	9.3756
aa[ffffffcccmmmmccc]ffffff]a	chr16:87360412-87360662(-)$1	250	155	183	10.7304
!!eeeee!!cccmmmmccc22eeeee22	chr16:1424960-1425245(-)$1	285	79	107	11.6428
gggggg!!ddddooooooddddgggggg	chr16:88560277-88560504(+)$1	227	27	55	9.1891
fa"""dddd!!ammmma22dddd333a]	chr3:49045451-49045724(+)$1	273	115	143	10.5088
ffffff!!ddddmmmmdddd22ffffff	chr16:30797967-30798250(-)$1	283	216	244	10.1152
iiiiiii!!bbnnnnnbb333iiiiiii	chr10:128594601-128594856(+)$1	255	42	70	9.6254
ggggg[bb!!bbmmmmbb22bbgggggg	chr17:73850954-73851223(-)$1	269	179	207	11.6682
c[dddd"""cccmmmmcccdddd]ccc6	chr9:131903001-131903249(+)$1	248	31	59	11.1385
cdddd####cccmmmmccc22dddd]cc	chr19:5055522-5055805(+)$1	283	120	148	11.5148
ddddda"""cccmmmmccc]a]dddd]d	chr18:46067463-46067726(+)$1	263	132	160	11.3496
dd[dddd[a[bbmmmmbb]a]dddd]dd	chr20:62901196-62901482(+)$1	286	181	209	10.1552
cffffff"""bbmmmmbb333ffffff7	chr1:11708888-11709147(-)$1	259	130	158	11.0027
ddccc"""ddddmmmmddddccc]dddd	chr2:241906355-241906594(-)$1	239	203	231	10.1564
bb[eeeee[cccmmmmccc]eeeee333	chr22:47528885-47529166(+)$1	281	39	67	11.2804
::==========mmmm==========ii	chr16:87378374-87378615(-)$1	241	0	28	11.3039
gggggg[eeeeemmmmeeeeeggggggg	chr9:135994560-135994796(-)$1	236	94	122	10.8433
c[dddd[bbcccmmmmccc4444bb]dd	chr1:3450415-3450660(-)$1	245	120	148	10.2709
b[ggggggg!!ammmma22ggggggg]b	chr19:35762784-35763061(+)$1	277	174	202	11.7985
)))))ccc[cccmmmmccc]ccc333gg	chr9:137253219-137253495(+)$1	276	82	110	10.0175
"""eeeee!!bbmmmmbb22eeeee444	chr10:134367516-134367746(+)$1	230	105	133	11.3598
[ccc[ccc!!bbmmmmbbcccccc]bb:	chr16:57304346-57304605(-)$1	259	4	32	10.1363
dddd[gggggggmmmmgggggggddddf	chr17:78290255-78290530(+)$1	275	203	231	10.2514
gggg[a!!ddddmmmmdddd22a]gggg	chr20:60624425-60624717(-)$1	292	129	157	11.6797
gggg!!ccc[bbmmmmbb22ccc]gggg	chr16:85656097-85656332(+)$1	235	119	147	12.4209
g[accc!!ddddmmmmdddd22ccc22a	chr14:105922156-105922472(+)$1	316	55	83	10.7956

#otherMatches

#Seq PSSM
UGGCCUGCGGCUCAGUGGCCUCCCCGGC	chr11:61583080-61583361(+)$1	281	229	257	11.5201
UGCUCAGUUCUGAAGGCGGAGGGAGGGC	chr2:239005724-239005962(+)$1	238	12	40	9.7132
GGUUCUGAUGAGGGAGGUCACGGAGCUG	chr12:124995371-124995611(-)$1	240	150	178	10.0343
GCCCCCCGAAGUGUGGGCGGUGGGGAGG	chr1:1982809-1983129(+)$1	320	46	74	11.8800
CCCCUGAGGGAUGCUGGUCCUUCGCUCU	chr4:2258827-2259063(-)$1	236	9	37	10.2527
UUCAGGGAGAGCAGCCGCAGUGCCCUGU	chr13:113351683-113351925(+)$1	242	102	130	11.1994
CUGGUGGUGGAGGAACCUGAACCUUCAG	chr14:95777408-95777663(-)$1	255	139	167	11.5948
ggggccUUUGUUAGGGAGCCAGGCCCCA	chr17:42276515-42276754(-)$1	239	131	159	13.4003
CACUCUgggcgcaggggcggccggcggg	chr6:16761010-16761310(-)$1	300	65	93	11.1512
CCUCCCCAGCACCUACGCUCUGGGGGUG	chr2:241902103-241902337(-)$1	234	75	103	12.1298
UCCUGGAGGAGGGAGACCGCUUAUCAGG	chr1:154976630-154976873(+)$1	243	182	210	11.8854
GCCCAGGCAGCCGCUAGGAAUGGUAGGU	chr2:240017427-240017694(-)$1	267	129	157	11.3594
CCACCCCCAGUUCACAAGCUGGGGGUGG	chr11:63835155-63835398(-)$1	243	161	189	13.5223
UCUGGGUCUGGCUGGCGCCCAGAUCUAG	chr19:1585103-1585472(-)$1	369	0	28	13.3638
AACGAGCCUGGUGGAGGCCGGGCGAGGA	chr19:56155279-56155543(+)$1	264	69	97	11.2549
GGGGAGAGAGGAGACACCUCUUCCUGAG	chr7:139404637-139404928(-)$1	291	144	172	10.8890
GGUUCAGUGUCCAGAAGGAAAAAACCCU	chr10:103599068-103599306(-)$1	238	202	230	11.3876
GGUCCUGUCCCCCGUAGGGCACUCUUCC	chr19:1172974-1173230(-)$1	256	4	32	10.8836
GGAGAAGGAGCAGGUCUGUUGGGUCUUC	chr2:241450390-241450665(-)$1	275	195	223	9.7690
GUGGGCGCGGCGUCUCCCGAGCCCACCC	chr2:241497013-241497282(-)$1	269	123	151	10.1979
CUGGGCUUCAGGGUCCCCUUAAGUCUCC	chr1:2163352-2163599(+)$1	247	18	46	11.2033
CUUGGACCAGGGUUAACCCUGGUCCCGU	chrX:40028948-40029304(-)$1	356	163	191	11.1259
CCAGCCCCGCGGAGAGGUGCGGGGGUGG	chr11:125932137-125932528(-)$1	391	39	67	9.3958
UGCUCAGUGGGAUUUGUCCCUGGAGCAC	chr21:46854750-46855022(+)$1	272	180	208	10.3471
UCUUGCACCUCGGCACCGAGGGAGGGGA	chr6:7910200-7910486(-)$1	286	188	216	10.4576
GAGCAGCAGGGAGGCGUCCAGGCUGGAA	chr14:105339766-105340051(+)$1	285	231	259	11.6987
CGUGGCUCAGGUCAGAAUCUGGGCUGCU	chr16:696871-697150(+)$1	279	166	194	13.4133
AAGGGCAGAGGGUGGCCCUUUUGCCCUG	chr22:47522608-47522857(+)$1	249	33	61	12.3946
UCUGCAGGGUGGGGUGCCCAUCCUGGGG	chr20:62566610-62566873(+)$1	263	174	202	9.3756
CAGACUUCCCAGCUUCUUGAGGAAGUGU	chr16:87360412-87360662(-)$1	250	155	183	10.7304
CCGCGGCACGAGGAUACUCCGGCUGCCC	chr16:1424960-1425245(-)$1	285	79	107	11.6428
CGGCUUCAAAGGAGGGCACCUUGAGCUG	chr16:88560277-88560504(+)$1	227	27	55	9.1891
GCGGUGCCCGGGGAAGCAGGGGCUGAGA	chr3:49045451-49045724(+)$1	273	115	143	10.5088
CGGGGCAGGGGCGGAUGCCCAGGCUCUG	chr16:30797967-30798250(-)$1	283	216	244	10.1152
GGGGCGCGACCUGGGUGGCCAGCGCCCC	chr10:128594601-128594856(+)$1	255	42	70	9.6254
CCCAGACUUGUGAUUUCAGUAGCUGGGA	chr17:73850954-73851223(-)$1	269	179	207	11.6682
UGUGCACAGGGCUGGAGCCUGCAGACUg	chr9:131903001-131903249(+)$1	248	31	59	11.1385
CCCGCAGCAGGCGAGUGUCGGGUGGUGG	chr19:5055522-5055805(+)$1	283	120	148	11.5148
cccggcccaggccgccgcccgcccggcg	chr18:46067463-46067726(+)$1	263	132	160	11.3496
CGGUAUGGGGUUGUGUGAGUGCAUGGCG	chr20:62901196-62901482(+)$1	286	181	209	10.1552
GGUGGUGGAGAGAGUUCUGAAUACCGCG	chr1:11708888-11709147(-)$1	259	130	158	11.0027
CCCCUGGGGCUGGCAGCGGUGGGAGGGU	chr2:241906355-241906594(-)$1	239	203	231	10.1564
cucuuuccauguuuuuauaaggaaaaau	chr22:47528885-47529166(+)$1	281	39	67	11.2804
AUGGGCUCUGCCCCCAGGUGGGGUUCGG	chr16:87378374-87378615(-)$1	241	0	28	11.3039
GAGGGGGCGGGGAAGUCCCUGUCCCUCC	chr9:135994560-135994796(-)$1	236	94	122	10.8433
UGAGGGUGCGGCUGGUGCCUCCUGCUUC	chr1:3450415-3450660(-)$1	245	120	148	10.2709
UGAGUCCUAAAGGUGGUGAUGGGACUGG	chr19:35762784-35763061(+)$1	277	174	202	11.7985
UCUUUGUCUCCCGGCUGGGUGGCUGGGA	chr9:137253219-137253495(+)$1	276	82	110	10.0175
AGGGAGGAUUCGAGGGCGCCUCCUCAGA	chr10:134367516-134367746(+)$1	230	105	133	11.3598
GUCGUGGCCAGCUUAGGCGCCCGGAGCC	chr16:57304346-57304605(-)$1	259	4	32	10.1363
gggcuagggucuuaggagacccugccca	chr17:78290255-78290530(+)$1	275	203	231	10.2514
GCAGGCAGUGGGGACCCCUGAAGGCUGU	chr20:60624425-60624717(-)$1	292	129	157	11.6797
CCGCCACUUUGAACCAUCUUGAGAGUGG	chr16:85656097-85656332(+)$1	235	119	147	12.4209
UGUGCUGAGGCCUGUGGGUCGGAGCCUG	chr14:105922156-105922472(+)$1	316	55	83	10.7956

#DB
(((...(.((((....)))).).)))))	chr11:61583080-61583361(+)$1	1	229	257	11.5201
(((((..(((((....)))))...))))	chr2:239005724-239005962(+)$1	1	12	40	9.7132
(((((((.(((......))))))))))(	chr12:124995371-124995611(-)$1	1	150	178	10.0343
.((((((.(.((....))..).))).))	chr1:1982809-1983129(+)$1	1	46	74	11.8800
.....(((((((....))))))))))))	chr4:2258827-2259063(-)$1	1	9	37	10.2527
..((((((..((....))..).))))))	chr13:113351683-113351925(+)$1	1	102	130	11.1994
((((.(((..((....))..))).))))	chr14:95777408-95777663(-)$1	1	139	167	11.5948
(((((((..(((....))).))))))).	chr17:42276515-42276754(-)$1	1	131	159	13.4003
(.(.((((.(((....))).)))).).)	chr6:16761010-16761310(-)$1	1	65	93	11.1512
(((((((((..(....)..))))))).)	chr2:241902103-241902337(-)$1	1	75	103	12.1298
(((((((((.((....)).))).)))))	chr1:154976630-154976873(+)$1	1	182	210	11.8854
(((..(.((.((....))..)).).)))	chr2:240017427-240017694(-)$1	1	129	157	11.3594
((((((((((((....))))))))))))	chr11:63835155-63835398(-)$1	1	161	189	13.5223
((((((((((((....).))))))))))	chr19:1585103-1585472(-)$1	1	0	28	13.3638
..(..(((((((....)))))))..)..	chr19:56155279-56155543(+)$1	1	69	97	11.2549
((((((((.(......)))))))))))(	chr7:139404637-139404928(-)$1	1	144	172	10.8890
((((.....(((....)))...))))))	chr10:103599068-103599306(-)$1	1	202	230	11.3876
((....((.(((....))).))....))	chr19:1172974-1173230(-)$1	1	4	32	10.8836
(((((...((((....))))...)))))	chr2:241450390-241450665(-)$1	1	195	223	9.7690
((((((.(((......))).)))))))(	chr2:241497013-241497282(-)$1	1	123	151	10.1979
((((((((.(((....))).)))))...	chr1:2163352-2163599(+)$1	1	18	46	11.2033
...(((((((((....)))))))))...	chrX:40028948-40029304(-)$1	1	163	191	11.1259
(((.(((((((......))))))).)))	chr11:125932137-125932528(-)$1	1	39	67	9.3958
(((((...((((....))))..))))))	chr21:46854750-46855022(+)$1	1	180	208	10.3471
((((...(((((....)))))...))).	chr6:7910200-7910486(-)$1	1	188	216	10.4576
...((((..(((....)))..))))...	chr14:105339766-105340051(+)$1	1	231	259	11.6987
)(((((((((((....)))))))))))(	chr16:696871-697150(+)$1	1	166	194	13.4133
.(((((((((((....)))))))))))(	chr22:47522608-47522857(+)$1	1	33	61	12.3946
(((.(((((((((...))))))))))))	chr20:62566610-62566873(+)$1	1	174	202	9.3756
((.(((((((((....))).)))))).)	chr16:87360412-87360662(-)$1	1	155	183	10.7304
..(((((..(((....)))..)))))..	chr16:1424960-1425245(-)$1	1	79	107	11.6428
((((((..((((......))))))))))	chr16:88560277-88560504(+)$1	1	27	55	9.1891
((...((((..(....)..))))...).	chr3:49045451-49045724(+)$1	1	115	143	10.5088
((((((..((((....))))..))))))	chr16:30797967-30798250(-)$1	1	216	244	10.1152
(((((((..((.....))...)))))))	chr10:128594601-128594856(+)$1	1	42	70	9.6254
(((((.((..((....))..))))))))	chr17:73850954-73851223(-)$1	1	179	207	11.6682
(.((((...(((....))))))).))).	chr9:131903001-131903249(+)$1	1	31	59	11.1385
(((((....(((....)))..)))).))	chr19:5055522-5055805(+)$1	1	120	148	11.5148
((((((...(((....))).).)))).)	chr18:46067463-46067726(+)$1	1	132	160	11.3496
((.((((.(.((....)).).)))).))	chr20:62901196-62901482(+)$1	1	181	209	10.1552
(((((((...((....))...)))))).	chr1:11708888-11709147(-)$1	1	130	158	11.0027
(((((...((((....))))))).))))	chr2:241906355-241906594(-)$1	1	203	231	10.1564
((.(((((.(((....))).)))))...	chr22:47528885-47529166(+)$1	1	39	67	11.2804
..((((((((((....))))))))))((	chr16:87378374-87378615(-)$1	1	0	28	11.3039
((((((.(((((....))))))))))))	chr9:135994560-135994796(-)$1	1	94	122	10.8433
(.((((.(((((....)))....)).))	chr1:3450415-3450660(-)$1	1	120	148	10.2709
(.(((((((..(....)..))))))).)	chr19:35762784-35763061(+)$1	1	174	202	11.7985
.....(((.(((....))).)))...))	chr9:137253219-137253495(+)$1	1	82	110	10.0175
...(((((..((....))..)))))...	chr10:134367516-134367746(+)$1	1	105	133	11.3598
.(((.(((..((....)))))))).)).	chr16:57304346-57304605(-)$1	1	4	32	10.1363
((((.(((((((....)))))))))))(	chr17:78290255-78290530(+)$1	1	203	231	10.2514
((((.(..((((....))))..).))))	chr20:60624425-60624717(-)$1	1	129	157	11.6797
((((..(((.((....))..))).))))	chr16:85656097-85656332(+)$1	1	119	147	12.4209
(.((((..((((....))))..)))..)	chr14:105922156-105922472(+)$1	1	55	83	10.7956

#PSSM
g : 0.22	f : 0.14	c : 0.12	d : 0.07	e : 0.05	" : 0.05	= : 0.05	[ : 0.03	! : 0.03	: : 0.03	b : 0.03	$ : 0.01	h : 0.01	# : 0.01	a : 0.01	i : 0.01	) : 0.01	
g : 0.20	f : 0.12	c : 0.09	[ : 0.09	= : 0.09	d : 0.09	" : 0.05	e : 0.03	! : 0.03	a : 0.03	$ : 0.01	h : 0.01	# : 0.01	i : 0.01	b : 0.01	: : 0.01	) : 0.01	
g : 0.24	f : 0.11	= : 0.11	c : 0.09	d : 0.09	e : 0.07	a : 0.05	" : 0.05	[ : 0.05	# : 0.03	$ : 0.01	h : 0.01	i : 0.01	) : 0.01	
g : 0.20	d : 0.12	e : 0.11	f : 0.11	= : 0.11	c : 0.09	[ : 0.05	" : 0.03	! : 0.03	i : 0.03	$ : 0.01	# : 0.01	h : 0.01	) : 0.01	
g : 0.18	d : 0.12	e : 0.11	= : 0.11	[ : 0.07	f : 0.07	" : 0.05	c : 0.05	! : 0.05	i : 0.05	$ : 0.03	# : 0.01	h : 0.01	) : 0.01	
g : 0.22	d : 0.11	= : 0.11	" : 0.09	c : 0.09	e : 0.09	a : 0.05	i : 0.05	f : 0.05	! : 0.03	# : 0.03	$ : 0.01	[ : 0.01	
g : 0.14	c : 0.11	= : 0.11	" : 0.11	! : 0.09	e : 0.09	d : 0.07	[ : 0.07	i : 0.05	b : 0.03	f : 0.03	a : 0.01	$ : 0.01	# : 0.01	
! : 0.14	e : 0.11	g : 0.11	c : 0.11	= : 0.11	" : 0.11	[ : 0.07	b : 0.07	d : 0.03	i : 0.03	a : 0.01	$ : 0.01	f : 0.01	# : 0.01	
d : 0.16	! : 0.16	g : 0.11	[ : 0.11	= : 0.09	c : 0.07	e : 0.05	" : 0.05	a : 0.03	b : 0.03	i : 0.03	$ : 0.01	f : 0.01	# : 0.01	
c : 0.29	d : 0.14	! : 0.14	[ : 0.09	= : 0.09	g : 0.07	e : 0.05	i : 0.03	a : 0.01	b : 0.01	" : 0.01	
c : 0.27	b : 0.22	d : 0.14	= : 0.09	g : 0.07	e : 0.05	! : 0.05	o : 0.03	i : 0.03	
c : 0.25	b : 0.20	d : 0.14	o : 0.07	a : 0.07	= : 0.07	e : 0.05	g : 0.05	i : 0.03	n : 0.01	
m : 0.87	o : 0.09	i : 0.01	n : 0.01	
m : 0.87	o : 0.09	l : 0.01	n : 0.01	
m : 0.87	o : 0.09	l : 0.01	n : 0.01	
m : 0.87	o : 0.09	l : 0.01	n : 0.01	
c : 0.27	b : 0.22	d : 0.12	a : 0.09	= : 0.07	e : 0.05	o : 0.05	g : 0.05	i : 0.03	
c : 0.29	b : 0.22	d : 0.12	= : 0.09	g : 0.07	e : 0.05	2 : 0.05	i : 0.03	] : 0.01	o : 0.01	
c : 0.31	2 : 0.18	d : 0.14	= : 0.11	g : 0.07	e : 0.05	] : 0.03	i : 0.03	3 : 0.03	
d : 0.18	2 : 0.18	] : 0.16	g : 0.11	= : 0.11	e : 0.05	c : 0.05	3 : 0.05	i : 0.03	a : 0.01	4 : 0.01	
g : 0.16	2 : 0.12	e : 0.11	c : 0.11	= : 0.11	d : 0.07	3 : 0.07	a : 0.05	b : 0.05	] : 0.03	i : 0.03	f : 0.01	4 : 0.01	
g : 0.18	d : 0.12	c : 0.11	= : 0.11	3 : 0.07	e : 0.07	2 : 0.07	] : 0.05	b : 0.05	i : 0.05	f : 0.03	a : 0.01	4 : 0.01	
g : 0.22	c : 0.12	d : 0.12	= : 0.11	e : 0.09	f : 0.09	] : 0.05	3 : 0.05	i : 0.05	4 : 0.03	a : 0.01	
g : 0.20	e : 0.11	d : 0.11	= : 0.11	] : 0.09	f : 0.09	3 : 0.07	c : 0.05	i : 0.05	a : 0.01	2 : 0.01	4 : 0.01	h : 0.01	b : 0.01	
g : 0.22	e : 0.12	f : 0.11	= : 0.11	d : 0.11	c : 0.07	] : 0.07	i : 0.05	3 : 0.03	2 : 0.01	4 : 0.01	h : 0.01	b : 0.01	
g : 0.24	f : 0.11	= : 0.11	e : 0.09	] : 0.07	4 : 0.07	c : 0.05	3 : 0.05	d : 0.05	a : 0.03	h : 0.01	8 : 0.01	i : 0.01	b : 0.01	2 : 0.01	
g : 0.22	f : 0.11	c : 0.09	] : 0.09	= : 0.09	e : 0.07	d : 0.07	2 : 0.05	4 : 0.05	i : 0.03	h : 0.01	8 : 0.01	a : 0.01	3 : 0.01	b : 0.01	
g : 0.16	d : 0.12	f : 0.12	e : 0.09	c : 0.09	] : 0.05	4 : 0.05	= : 0.03	2 : 0.03	a : 0.03	i : 0.03	h : 0.01	8 : 0.01	6 : 0.01	7 : 0.01	3 : 0.01	b : 0.01	: : 0.01	

#score	597.7590021437368
#seq	54
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_CDS_m3_run1.txt

#BEAR
ffdddd[cccmmmmcccdddd22	chr6:131992290-131992500(+)$1	210	169	192	9.5397
d[ccc!!cccmmmmccc]cccdd	chr5:179048193-179048441(-)$1	248	124	147	11.0831
cc[ccc[cccmmmmccc]ccc]c	chr17:40639207-40639480(+)$1	273	232	255	11.8854
ccc!!eeeeemmmmeeeee22cc	chr10:63816832-63817128(+)$1	296	54	77	9.5567
cc[dddd[bbmmmmbb]dddd]c	chr17:40990002-40990274(+)$1	272	44	67	9.9308
!iiiiiiiiimmmmiiiiiiiii	chr10:6157311-6157617(+)$1	306	170	193	10.7700
d"""ccc[bbmmmmbbccc22dd	chr12:76443437-76443653(-)$1	216	130	153	10.0050
ffffff[cccmmmmcccffffff	chr8:48848814-48849058(-)$1	244	67	90	9.9817
hhhhh!!cccmmmmccc]hhhhh	chr2:44170914-44171132(-)$1	218	60	83	9.7925
:iiiiiiiiimmmmiiiiiiiii	chr5:94839484-94839716(-)$1	232	32	55	9.7323
c[bb[eeeeemmmmeeeeebb]c	chr2:21238027-21238232(-)$1	205	39	62	8.9377
ffffff[cccmmmmcccffffff	chr2:102448143-102448403(+)$1	260	44	67	9.9817
c!!ccc[cccmmmmccc]ccc22	chr2:21237970-21238208(-)$1	238	171	194	11.5225
cc[ccc!!bbmmmmbb22ccc]c	chr17:29558990-29559287(+)$1	297	177	200	11.6607
eeee[eeeeemmmmeeeee]eee	chrX:38177979-38178236(-)$1	257	108	131	9.0287
hhh[a"""bbmmmmbb333a]hh	chr20:37125896-37126145(+)$1	249	52	75	10.6302
ggg!!eeeeemmmmeeeee]ggg	chr3:171426442-171426668(-)$1	226	34	57	10.0564
ddd####cccmmmmcccdddd]b	chr4:155529698-155529901(-)$1	203	150	173	10.0320
==========mmmm=========	chr1:193218806-193219102(+)$1	296	208	231	11.3621
ggggggg[bbmmmmbb]gggggg	chr9:94118106-94118341(-)$1	235	199	222	10.9944
ffffff[a[ammmma]a]fffff	chr1:33245690-33245983(-)$1	293	185	208	9.4090
c[bb####bbmmmmbb333bb]c	chr21:27394120-27394368(-)$1	248	122	145	10.4850
dddd####bbmmmmbb4444ddd	chr14:31592026-31592268(-)$1	242	97	120	9.7844
ccc[ffffffmmmmffffffccc	chr17:73035204-73035416(-)$1	212	116	139	8.9916
ddd!!eeeeemmmmeeeee4444	chr2:71654359-71654640(+)$1	281	177	200	9.4694
bb"""eeeeemmmmeeeee333b	chr2:55467056-55467274(-)$1	218	122	145	9.7049
eeee[cccbbmmmmbb22ccc]e	chr2:96520994-96521261(-)$1	267	92	115	10.5371
cc[gggggggmmmmggggggg]c	chr15:72190084-72190365(-)$1	281	180	203	10.8209
fffff!!cccmmmmccc]fffff	chr7:77200370-77200601(+)$1	231	163	186	10.5479
ffffff[cccmmmmcccffffff	chr1:62329974-62330310(+)$1	336	228	251	9.9817
ggggggg[bbmmmmbbggggggg	chr2:120714493-120714752(+)$1	259	96	119	10.9394
cdddd!!cccmmmmccc22dddd	chr2:198267412-198267646(-)$1	234	41	64	9.9772
cc[ccc!!bbmmmmbb]ccc]cc	chr10:101567168-101567378(+)$1	210	38	61	11.1981
eeeee!!cccmmmmccc22eeee	chr2:64322011-64322285(-)$1	274	243	266	10.2696
!a!!bb[cccmmmmcccbb22a2	chr17:78247009-78247235(+)$1	226	125	148	9.5192
==========mmmm=========	chr1:19474496-19474715(-)$1	219	56	79	11.3621
gggggg[cccmmmmccc22gggg	chr10:21901175-21901384(+)$1	209	173	196	11.3813
d[dddd[cccmmmmccc]dddd]	chr6:99850315-99850544(-)$1	229	5	28	9.9802
fffff!!cccmmmmccc22ffff	chr1:94341937-94342204(-)$1	267	204	227	10.4900
e!!ccc!!bbmmmmbb22ccc]e	chr1:52933805-52934038(-)$1	233	29	52	11.4959
bb[ccc[cccmmmmccc]cccbb	chr7:104703909-104704125(+)$1	216	80	103	10.5700
!a[ccc!!bbmmmmbb22ccca2	chr9:101900209-101900470(+)$1	261	65	88	11.1385
ff!!ccc[bbmmmmbb]ccc333	chrX:18942075-18942292(-)$1	217	154	177	11.1761
eee!!eeeeemmmmeeeeeeeee	chr4:17974342-17974579(-)$1	237	57	80	9.1741
ii"""eeeeemmmmeeeeeiiii	chr4:155531226-155531449(-)$1	223	90	113	10.1575
ee"""eeeeemmmmeeeee333e	chr13:21370114-21370372(-)$1	258	128	151	10.0795
===========lll=========	chr15:40247807-40248067(+)$1	260	211	234	8.8995
iiiiiiicccmmmmccc22iiii	chr2:120836006-120836258(+)$1	252	122	145	11.2782
""ccc!!cccmmmmccc22ccc3	chr2:61632974-61633244(-)$1	270	33	56	11.2204
d!!eeeeebbmmmmbb]eeeee3	chr16:23444878-23445087(-)$1	209	108	131	9.9985
bb[gggggggmmmmggggggg]b	chr15:63845810-63846101(+)$1	291	94	117	10.1459
[bbgggggggmmmmggggggg]b	chr2:73679723-73680002(+)$1	279	178	201	9.8768
bbeeeee[bbmmmmbbeeeee]b	chr2:230668622-230668862(-)$1	240	157	180	9.4856
gggg!!ddddmmmmdddd333gg	chr14:58831605-58831951(+)$1	346	272	295	9.6764
[cccccc[bbmmmmbb22ccc22	chr3:171431650-171431911(-)$1	261	120	143	10.5786
ee"""eeeeemmmmeeeee333e	chr13:21370188-21370442(-)$1	254	198	221	10.0795

#otherMatches

#Seq PSSM
UUGUCACGGUAAGUGCUUGACCC	chr6:131992290-131992500(+)$1	210	169	192	9.5397
AACUUGAAUCAGAAGAUGAAGUC	chr5:179048193-179048441(-)$1	248	124	147	11.0831
AAUAGUAACAUUAAUGUCAUUUU	chr17:40639207-40639480(+)$1	273	232	255	11.8854
GGCCAGGUCAGCCUUGACCAAGC	chr10:63816832-63817128(+)$1	296	54	77	9.5567
AGAGGCAGGGGAUGCUGUGUCCU	chr17:40990002-40990274(+)$1	272	44	67	9.9308
ACAAAUUCAGGGUCUUGGAUUUG	chr10:6157311-6157617(+)$1	306	170	193	10.7700
AAAUGAGCAAAUAAUUCUCUGUG	chr12:76443437-76443653(-)$1	216	130	153	10.0050
AGACACUGGUGACGACCGUGUUU	chr8:48848814-48849058(-)$1	244	67	90	9.9817
UGAAAUUACCUAAGGGUCUUUUG	chr2:44170914-44171132(-)$1	218	60	83	9.7925
AUUACUUUUGAUAUUAAAAGUAA	chr5:94839484-94839716(-)$1	232	32	55	9.7323
UGAGACCUGUGGUUACAGGCUGA	chr2:21238027-21238232(-)$1	205	39	62	8.9377
UUUGGUGUGAGUGCUCAGCUGGA	chr2:102448143-102448403(+)$1	260	44	67	9.9817
AAGAGCUUGCAUAUGUAUGCUAA	chr2:21237970-21238208(-)$1	238	171	194	11.5225
GUGUGGAAUUGAUGGAAGCCAAA	chr17:29558990-29559287(+)$1	297	177	200	11.6607
GAUUAAGCAGCUGUCUGCUGGAU	chrX:38177979-38178236(-)$1	257	108	131	9.0287
CUGUCUCUCCUCCAGGCUUGUCA	chr20:37125896-37126145(+)$1	249	52	75	10.6302
UUUCAGGUAUGUUAAUGCCAAAG	chr3:171426442-171426668(-)$1	226	34	57	10.0564
GGAUUUGGACAUCUGUCUCCUAC	chr4:155529698-155529901(-)$1	203	150	173	10.0320
UAAAAUAUGCUUGUGUGUGUUUU	chr1:193218806-193219102(+)$1	296	208	231	11.3621
GAAAUUAAACUGUAGUCUGAUUU	chr9:94118106-94118341(-)$1	235	199	222	10.9944
CAGUUCGUGCCCAAGGAGGAACU	chr1:33245690-33245983(-)$1	293	185	208	9.4090
gaggaaCCCUACGAAGAAGCCAC	chr21:27394120-27394368(-)$1	248	122	145	10.4850
UGAUGAGAAUGAAGAUGACAAUC	chr14:31592026-31592268(-)$1	242	97	120	9.7844
AGGAUGAUGGGUAGCCGUUGCCU	chr17:73035204-73035416(-)$1	212	116	139	8.9916
CUUAACAGGUAGAUACUUGGAAG	chr2:71654359-71654640(+)$1	281	177	200	9.4694
CAGUAGGUGAGUGAUCACUGAAU	chr2:55467056-55467274(-)$1	218	122	145	9.7049
AUUCAAGCCAGAUGUGAUGCUAG	chr2:96520994-96521261(-)$1	267	92	115	10.5371
AGUAGAGAGGCCAUCCUCUCUCC	chr15:72190084-72190365(-)$1	281	180	203	10.8209
UAGAAAUGCUAAUUAGCCUUUUG	chr7:77200370-77200601(+)$1	231	163	186	10.5479
GUGGUUGCAUGAUAAUGAACCAU	chr1:62329974-62330310(+)$1	336	228	251	9.9817
AGAUGAUGCCACACGGGUCAUUU	chr2:120714493-120714752(+)$1	259	96	119	10.9394
GGUUGAAGAUUAAUAUUACCAAC	chr2:198267412-198267646(-)$1	234	41	64	9.9772
CUCAAGAACCUGCUGGCCUUUAG	chr10:101567168-101567378(+)$1	210	38	61	11.1981
GCUGGAUUUUAUGUGGACGCCGG	chr2:64322011-64322285(-)$1	274	243	266	10.2696
CCGGGCUCAGACAGUUGGCAAGA	chr17:78247009-78247235(+)$1	226	125	148	9.5192
GGUGGGGUUAGUGAUAACCCUGC	chr1:19474496-19474715(-)$1	219	56	79	11.3621
CAUGGAUGUCGACAGGCUUUCCA	chr10:21901175-21901384(+)$1	209	173	196	11.3813
GACAGAGGAUCUGAGUCAUCUGA	chr6:99850315-99850544(-)$1	229	5	28	9.9802
GAGUGCUGAUAAAAAUUUUUACU	chr1:94341937-94342204(-)$1	267	204	227	10.4900
CUUGAAGAUGUUUUCAGAUUCUG	chr1:52933805-52934038(-)$1	233	29	52	11.4959
CAUGAUGAUGGAUACAUGAUCUG	chr7:104703909-104704125(+)$1	216	80	103	10.5700
AGAGAAGAACGUUCGUGGUUCCG	chr9:101900209-101900470(+)$1	261	65	88	11.1385
CACUGACCUUUCUUAAAGUCCUU	chrX:18942075-18942292(-)$1	217	154	177	11.1761
CUCUAAAAACACAGGUUUUGAGA	chr4:17974342-17974579(-)$1	237	57	80	9.1741
CUGUUUGUAGAUAUUUGCAGGAA	chr4:155531226-155531449(-)$1	223	90	113	10.1575
CAAAAGAAUUCAUAGAUUUCAGU	chr13:21370114-21370372(-)$1	258	128	151	10.0795
UUUACUACAUUGAAGAUGUAGUG	chr15:40247807-40248067(+)$1	260	211	234	8.8995
GGAGAUACCAAAAUUGGCUUAUU	chr2:120836006-120836258(+)$1	252	122	145	11.2782
GUAGUGUGUGCACUUAUUAACUU	chr2:61632974-61633244(-)$1	270	33	56	11.2204
UUAGCAGCCUGGCAAGAGCUGUG	chr16:23444878-23445087(-)$1	209	108	131	9.9985
UCCUUGCAGUUAUCGCUGUGAUG	chr15:63845810-63846101(+)$1	291	94	117	10.1459
UGAAUACUGGAAAACCAGUAUCU	chr2:73679723-73680002(+)$1	279	178	201	9.8768
UGAAAAUAGUAGAAACAUUUUAC	chr2:230668622-230668862(-)$1	240	157	180	9.4856
AUAUAACGAUUGAAGUUGAUAGU	chr14:58831605-58831951(+)$1	346	272	295	9.6764
ACAGCGGUGCCAUUGCCUUCGUC	chr3:171431650-171431911(-)$1	261	120	143	10.5786
CAAAAGAAUUCAUAGAUUUCAGU	chr13:21370188-21370442(-)$1	254	198	221	10.0795

#DB
((((((.(((....)))))))..	chr6:131992290-131992500(+)$1	1	169	192	9.5397
(.(((..(((....))).)))))	chr5:179048193-179048441(-)$1	1	124	147	11.0831
((.(((.(((....))).))).)	chr17:40639207-40639480(+)$1	1	232	255	11.8854
(((..(((((....)))))..))	chr10:63816832-63817128(+)$1	1	54	77	9.5567
((.((((.((....)).)))).)	chr17:40990002-40990274(+)$1	1	44	67	9.9308
.(((((((((....)))))))))	chr10:6157311-6157617(+)$1	1	170	193	10.7700
(...(((.((....)))))..))	chr12:76443437-76443653(-)$1	1	130	153	10.0050
((((((.(((....)))))))))	chr8:48848814-48849058(-)$1	1	67	90	9.9817
(((((..(((....))).)))))	chr2:44170914-44171132(-)$1	1	60	83	9.7925
.(((((((((....)))))))))	chr5:94839484-94839716(-)$1	1	32	55	9.7323
(.((.(((((....))))))).)	chr2:21238027-21238232(-)$1	1	39	62	8.9377
((((((.(((....)))))))))	chr2:102448143-102448403(+)$1	1	44	67	9.9817
(..(((.(((....))).)))..	chr2:21237970-21238208(-)$1	1	171	194	11.5225
((.(((..((....))..))).)	chr17:29558990-29559287(+)$1	1	177	200	11.6607
((((.(((((....))))).)))	chrX:38177979-38178236(-)$1	1	108	131	9.0287
(((.(...((....))...).))	chr20:37125896-37126145(+)$1	1	52	75	10.6302
(((..(((((....))))).)))	chr3:171426442-171426668(-)$1	1	34	57	10.0564
(((....(((....))))))).)	chr4:155529698-155529901(-)$1	1	150	173	10.0320
((((((((((....)))))))))	chr1:193218806-193219102(+)$1	1	208	231	11.3621
(((((((.((....)).))))))	chr9:94118106-94118341(-)$1	1	199	222	10.9944
((((((.(.(....).).)))))	chr1:33245690-33245983(-)$1	1	185	208	9.4090
(.((....((....))...)).)	chr21:27394120-27394368(-)$1	1	122	145	10.4850
((((....((....))....)))	chr14:31592026-31592268(-)$1	1	97	120	9.7844
(((.((((((....)))))))))	chr17:73035204-73035416(-)$1	1	116	139	8.9916
(((..(((((....)))))....	chr2:71654359-71654640(+)$1	1	177	200	9.4694
((...(((((....)))))...)	chr2:55467056-55467274(-)$1	1	122	145	9.7049
((((.(((((....))..))).)	chr2:96520994-96521261(-)$1	1	92	115	10.5371
((.(((((((....))))))).)	chr15:72190084-72190365(-)$1	1	180	203	10.8209
(((((..(((....))).)))))	chr7:77200370-77200601(+)$1	1	163	186	10.5479
((((((.(((....)))))))))	chr1:62329974-62330310(+)$1	1	228	251	9.9817
(((((((.((....)))))))))	chr2:120714493-120714752(+)$1	1	96	119	10.9394
(((((..(((....)))..))))	chr2:198267412-198267646(-)$1	1	41	64	9.9772
((.(((..((....)).))).))	chr10:101567168-101567378(+)$1	1	38	61	11.1981
(((((..(((....)))..))))	chr2:64322011-64322285(-)$1	1	243	266	10.2696
.(..((.(((....)))))..).	chr17:78247009-78247235(+)$1	1	125	148	9.5192
((((((((((....)))))))))	chr1:19474496-19474715(-)$1	1	56	79	11.3621
((((((.(((....)))..))))	chr10:21901175-21901384(+)$1	1	173	196	11.3813
(.((((.(((....))).)))).	chr6:99850315-99850544(-)$1	1	5	28	9.9802
(((((..(((....)))..))))	chr1:94341937-94342204(-)$1	1	204	227	10.4900
(..(((..((....))..))).)	chr1:52933805-52934038(-)$1	1	29	52	11.4959
((.(((.(((....))).)))))	chr7:104703909-104704125(+)$1	1	80	103	10.5700
.(.(((..((....))..)))).	chr9:101900209-101900470(+)$1	1	65	88	11.1385
((..(((.((....)).)))...	chrX:18942075-18942292(-)$1	1	154	177	11.1761
(((..(((((....)))))))))	chr4:17974342-17974579(-)$1	1	57	80	9.1741
((...(((((....)))))))))	chr4:155531226-155531449(-)$1	1	90	113	10.1575
((...(((((....)))))...)	chr13:21370114-21370372(-)$1	1	128	151	10.0795
(((((((((((...)))))))))	chr15:40247807-40248067(+)$1	1	211	234	8.8995
((((((((((....)))..))))	chr2:120836006-120836258(+)$1	1	122	145	11.2782
..(((..(((....)))..))).	chr2:61632974-61633244(-)$1	1	33	56	11.2204
(..(((((((....)).))))).	chr16:23444878-23445087(-)$1	1	108	131	9.9985
((.(((((((....))))))).)	chr15:63845810-63846101(+)$1	1	94	117	10.1459
.(((((((((....))))))).)	chr2:73679723-73680002(+)$1	1	178	201	9.8768
(((((((.((....))))))).)	chr2:230668622-230668862(-)$1	1	157	180	9.4856
((((..((((....))))...))	chr14:58831605-58831951(+)$1	1	272	295	9.6764
.((((((.((....))..)))..	chr3:171431650-171431911(-)$1	1	120	143	10.5786
((...(((((....)))))...)	chr13:21370188-21370442(-)$1	1	198	221	10.0795

#PSSM
c : 0.19	f : 0.14	d : 0.12	e : 0.12	g : 0.08	b : 0.07	! : 0.05	= : 0.05	h : 0.03	i : 0.03	[ : 0.03	: : 0.01	" : 0.01	
f : 0.14	c : 0.14	e : 0.10	g : 0.08	b : 0.08	[ : 0.07	i : 0.07	d : 0.07	! : 0.05	= : 0.05	" : 0.03	h : 0.03	a : 0.03	
[ : 0.14	d : 0.10	f : 0.10	c : 0.08	" : 0.08	! : 0.08	e : 0.08	g : 0.08	i : 0.05	b : 0.05	= : 0.05	h : 0.03	
c : 0.17	g : 0.12	! : 0.10	f : 0.10	d : 0.08	" : 0.08	e : 0.08	i : 0.05	= : 0.05	b : 0.03	[ : 0.03	h : 0.01	# : 0.01	
c : 0.21	f : 0.12	g : 0.10	! : 0.08	d : 0.07	" : 0.07	i : 0.05	[ : 0.05	# : 0.05	= : 0.05	e : 0.05	h : 0.01	a : 0.01	b : 0.01	
e : 0.21	c : 0.19	! : 0.14	g : 0.10	f : 0.08	d : 0.05	i : 0.05	# : 0.05	= : 0.05	" : 0.01	b : 0.01	
e : 0.21	[ : 0.19	! : 0.19	g : 0.08	c : 0.07	i : 0.05	# : 0.05	= : 0.05	d : 0.03	" : 0.01	f : 0.01	
c : 0.35	e : 0.19	[ : 0.12	! : 0.07	= : 0.05	g : 0.05	i : 0.03	# : 0.03	" : 0.01	a : 0.01	f : 0.01	d : 0.01	
c : 0.33	b : 0.28	e : 0.17	= : 0.05	g : 0.05	i : 0.03	[ : 0.01	f : 0.01	d : 0.01	
c : 0.33	b : 0.28	e : 0.17	= : 0.05	g : 0.05	i : 0.03	a : 0.01	f : 0.01	d : 0.01	
m : 0.98	= : 0.01	
m : 0.98	l : 0.01	
m : 0.98	l : 0.01	
m : 0.98	l : 0.01	
c : 0.33	b : 0.28	e : 0.17	= : 0.05	g : 0.05	i : 0.03	a : 0.01	f : 0.01	d : 0.01	
c : 0.33	b : 0.28	e : 0.17	= : 0.05	g : 0.05	i : 0.03	] : 0.01	f : 0.01	d : 0.01	
c : 0.35	e : 0.19	] : 0.08	2 : 0.08	g : 0.07	= : 0.05	i : 0.03	3 : 0.03	a : 0.01	4 : 0.01	f : 0.01	d : 0.01	
e : 0.21	2 : 0.19	] : 0.14	g : 0.08	d : 0.07	f : 0.07	c : 0.05	= : 0.05	i : 0.03	3 : 0.03	4 : 0.01	b : 0.01	
c : 0.21	e : 0.21	f : 0.10	2 : 0.10	g : 0.08	d : 0.07	3 : 0.05	= : 0.05	i : 0.03	h : 0.01	4 : 0.01	b : 0.01	
c : 0.21	f : 0.12	g : 0.10	d : 0.08	i : 0.07	3 : 0.07	e : 0.07	2 : 0.05	= : 0.05	b : 0.03	] : 0.03	4 : 0.03	h : 0.01	a : 0.01	
c : 0.19	g : 0.12	d : 0.10	f : 0.10	e : 0.08	3 : 0.08	i : 0.07	2 : 0.05	= : 0.05	b : 0.03	] : 0.03	h : 0.01	4 : 0.01	
] : 0.21	f : 0.10	d : 0.08	g : 0.08	c : 0.07	i : 0.07	e : 0.07	3 : 0.07	2 : 0.05	= : 0.05	h : 0.03	a : 0.03	4 : 0.01	b : 0.01	
c : 0.16	e : 0.12	f : 0.10	b : 0.10	2 : 0.08	g : 0.08	d : 0.07	i : 0.07	= : 0.05	3 : 0.05	h : 0.03	4 : 0.01	] : 0.01	

#score	576.3666301101928
#seq	56
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_UTR_m3_run2.txt

#BEAR
cccqqqqqqqqccc]	chr10:102122116-102122386(+)$1	270	164	179	13.9270
[bbqqqqqqqqbb22	chr7:149187754-149188044(-)$1	290	70	85	12.2367
[bbqqqqqqqqbb]a	chr3:99569631-99569892(+)$1	261	33	48	12.5377
[bbqqqqqqqqbbcc	chr11:6504389-6504832(+)$1	443	149	164	12.7175
cccqqqqqqqqccc:	chr8:103876233-103876462(-)$1	229	176	191	13.1977
fffqqqqqqqqffff	chr2:85547702-85548014(-)$1	312	205	220	12.3437
$bbqqqqqqqqbb33	chr3:184034315-184034616(+)$1	301	53	68	12.3453
fffqqqqqqqqffff	chr6:2961117-2961428(-)$1	311	207	222	12.3437
cccqqqqqqqqcccb	chr12:62730060-62730360(+)$1	300	4	19	13.6506
fffqqqqqqqqffff	chr7:73110968-73111290(+)$1	322	101	116	12.3437
dddqqqqqqqqdddd	chr7:73609803-73610040(+)$1	237	18	33	12.9732
dddqqqqqqqqdddd	chr5:64850943-64851253(-)$1	310	61	76	12.9732
ebbqqqqqqqqbb22	chr2:85546950-85547221(-)$1	271	191	206	12.1256
dddqqqqqqqqdddd	chr22:22050719-22050980(+)$1	261	202	217	12.9732
gggqqqqqqqqgggg	chr4:26434635-26434979(+)$1	344	20	35	12.9639
cccqqqqqqqqccc:	chr7:149186707-149187063(-)$1	356	34	49	13.1977
dddqqqqqqqqdddd	chr2:71215001-71215279(-)$1	278	96	111	12.9732
dddqqqqqqqqdddd	chr19:45912059-45912320(-)$1	261	149	164	12.9732
""aqqqqqqqqa444	chr2:48132203-48132483(-)$1	280	198	213	12.7933
hhhqqqqqqqqhhhh	chr17:79878698-79878989(-)$1	291	32	47	12.0599
c[aqqqqqqqqaccc	chr6:27223663-27223965(+)$1	302	69	84	13.4628
eeeqqqqqqqqeeee	chr12:8249950-8250230(+)$1	280	141	156	12.3542
fffqqqqqqqqffff	chr2:85547555-85547814(-)$1	259	5	20	12.3437
eeeqqqqqqqqeeee	chrX:62569263-62569569(-)$1	306	98	113	12.3542
cccqqqqqqqqccc2	chr19:54960624-54960923(+)$1	299	123	138	13.7612
c[aqqqqqqqqaccc	chr6:27223540-27223815(+)$1	275	192	207	13.4628
cccqqqqqqqqccc:	chr5:112227519-112227848(-)$1	329	228	243	13.1977
cccqqqqqqqqccc:	chr19:54378126-54378416(+)$1	290	242	257	13.1977
cccqqqqqqqqccc]	chr8:103876074-103876364(-)$1	290	191	206	13.9270
[bbqqqqqqqqbb]a	chr3:33132486-33132758(-)$1	272	204	219	12.5377
cccqqqqqqqqccc:	chr17:30808950-30809251(+)$1	301	237	252	13.1977
dddqqqqqqqqdddd	chr7:73609770-73610003(+)$1	233	51	66	12.9732
iiiqqqqqqqqiiii	chr18:32918100-32918411(-)$1	311	6	21	13.0395
===qqqqqqqq====	chr19:45911945-45912205(-)$1	260	195	210	13.1773
[bbqqqqqqqqbbcc	chr19:45911700-45911969(-)$1	269	114	129	12.7175
cccqqqqqqqqccc:	chr7:92242695-92242961(-)$1	266	156	171	13.1977
dddqqqqqqqqdddd	chr4:71655674-71655933(+)$1	259	39	54	12.9732
dddqqqqqqqqdddd	chr7:143002961-143003256(+)$1	295	23	38	12.9732
cccqqqqqqqqccc]	chr7:106849874-106850165(-)$1	291	98	113	13.9270
dddqqqqqqqqdddd	chr19:54377803-54378081(+)$1	278	188	203	12.9732
iiiqqqqqqqqiiii	chr19:54645284-54645558(+)$1	274	117	132	13.0395
cccqqqqqqqqccc]	chr22:20067973-20068227(+)$1	254	21	36	13.9270
cccqqqqqqqqccc]	chr10:102122186-102122473(+)$1	287	94	109	13.9270
gggqqqqqqqqgggg	chr6:30692288-30692512(+)$1	224	26	41	12.9639
gggqqqqqqqqgggg	chr11:73685737-73686027(-)$1	290	7	22	12.9639
bbaqqqqqqqqa]bb	chr19:54645773-54646066(+)$1	293	64	79	12.1602
===qqqqqqqq====	chr19:45911819-45912145(-)$1	326	135	150	13.1773
cccqqqqqqqqccc:	chr5:112227427-112227712(-)$1	285	92	107	13.1977
cccqqqqqqqqcccc	chr22:22118295-22118598(-)$1	303	12	27	13.8154
dddqqqqqqqqdddd	chr7:43689413-43689750(-)$1	337	218	233	12.9732
cccqqqqqqqqccc2	chr1:28300658-28300941(-)$1	283	172	187	13.7612
eeeqqqqqqqqeeee	chr7:92242778-92243089(-)$1	311	116	131	12.3542
dddqqqqqqqqdddd	chr12:57451081-57451410(-)$1	329	277	292	12.9732
cccqqqqqqqqccc2	chr3:10168208-10168466(+)$1	258	19	34	13.7612
cccqqqqqqqqccc:	chr1:67413154-67413472(+)$1	318	165	180	13.1977
cccqqqqqqqqccc:	chr19:18280139-18280465(+)$1	326	243	258	13.1977
eeeqqqqqqqqeeee	chr7:73108558-73108810(+)$1	252	227	242	12.3542
fffqqqqqqqqffff	chr11:58386396-58386659(+)$1	263	221	236	12.3437
b[aqqqqqqqqa]bb	chr10:102120793-102121049(+)$1	256	192	207	12.2484
dddqqqqqqqqdddd	chr7:149186552-149186847(-)$1	295	254	269	12.9732
cccqqqqqqqqccc:	chr3:75779288-75779593(-)$1	305	15	30	13.1977
dddqqqqqqqqdddd	chr1:113669263-113669550(+)$1	287	243	258	12.9732

#otherMatches

#Seq PSSM
UUCUCUUCCCUGAAC	chr10:102122116-102122386(+)$1	270	164	179	13.9270
UGCCUCUGCCAGCCU	chr7:149187754-149188044(-)$1	290	70	85	12.2367
CUCUUCCUCCUGAAC	chr3:99569631-99569892(+)$1	261	33	48	12.5377
UGAUUUCUAAUUCCA	chr11:6504389-6504832(+)$1	443	149	164	12.7175
GAGUCCGAAUCCUCU	chr8:103876233-103876462(-)$1	229	176	191	13.1977
UCUUCAUCCUCGGAG	chr2:85547702-85548014(-)$1	312	205	220	12.3437
UGCCUUUCUCUGUUC	chr3:184034315-184034616(+)$1	301	53	68	12.3453
aggcccuucaucuuc	chr6:2961117-2961428(-)$1	311	207	222	12.3437
AGGACUCACCACCUC	chr12:62730060-62730360(+)$1	300	4	19	13.6506
GCUCUCUUUUUGGCC	chr7:73110968-73111290(+)$1	322	101	116	12.3437
CUGUAUCUAUCUAGU	chr7:73609803-73610040(+)$1	237	18	33	12.9732
cagucauauuccugc	chr5:64850943-64851253(-)$1	310	61	76	12.9732
AGCAAAACAGGGCAG	chr2:85546950-85547221(-)$1	271	191	206	12.1256
GGCUCCCUGUUGCCC	chr22:22050719-22050980(+)$1	261	202	217	12.9732
GGUUUUCUCUUACUG	chr4:26434635-26434979(+)$1	344	20	35	12.9639
UGCUGUCUCCUGCAC	chr7:149186707-149187063(-)$1	356	34	49	13.1977
GGACUCACUUUUCUG	chr2:71215001-71215279(-)$1	278	96	111	12.9732
CACCUUCACCUGUGG	chr19:45912059-45912320(-)$1	261	149	164	12.9732
GUGAUUUCUCCCUUU	chr2:48132203-48132483(-)$1	280	198	213	12.7933
CCUCUGGCCUUGGGU	chr17:79878698-79878989(-)$1	291	32	47	12.0599
CUCUCAUUUUUGGUC	chr6:27223663-27223965(+)$1	302	69	84	13.4628
CCUCCUUUUCCAGGC	chr12:8249950-8250230(+)$1	280	141	156	12.3542
UCUUCAUCCUCGGAG	chr2:85547555-85547814(-)$1	259	5	20	12.3437
AUAUCUCUUCUUAUC	chrX:62569263-62569569(-)$1	306	98	113	12.3542
UCACUCGCCGUUGAC	chr19:54960624-54960923(+)$1	299	123	138	13.7612
CUCUCAUUUUUGGUC	chr6:27223540-27223815(+)$1	275	192	207	13.4628
uucuuuAUUCUGAAU	chr5:112227519-112227848(-)$1	329	228	243	13.1977
GCAGCCGUCCAUGCC	chr19:54378126-54378416(+)$1	290	242	257	13.1977
CUUUUACCCCCAAGU	chr8:103876074-103876364(-)$1	290	191	206	13.9270
UUCCACUGUUUGAUG	chr3:33132486-33132758(-)$1	272	204	219	12.5377
AGGUUUUGCAUCCUC	chr17:30808950-30809251(+)$1	301	237	252	13.1977
CUGUAUCUAUCUAGU	chr7:73609770-73610003(+)$1	233	51	66	12.9732
AAAUAACGAUUUUUC	chr18:32918100-32918411(-)$1	311	6	21	13.0395
AGGUUUCUUUCCCUU	chr19:45911945-45912205(-)$1	260	195	210	13.1773
ACAUCCAUUUCUGGC	chr19:45911700-45911969(-)$1	269	114	129	12.7175
GCCUUAUAAGUGGUU	chr7:92242695-92242961(-)$1	266	156	171	13.1977
ACUGAGAGAUAGGUG	chr4:71655674-71655933(+)$1	259	39	54	12.9732
AGAAACGUCCAUCUC	chr7:143002961-143003256(+)$1	295	23	38	12.9732
gaauuaucuucuucu	chr7:106849874-106850165(-)$1	291	98	113	13.9270
UUUUCACCCCUGAGC	chr19:54377803-54378081(+)$1	278	188	203	12.9732
AGGCUCUUGUUCCUC	chr19:54645284-54645558(+)$1	274	117	132	13.0395
cgggaccgaggccgc	chr22:20067973-20068227(+)$1	254	21	36	13.9270
UUCUCUUCCCUGAAC	chr10:102122186-102122473(+)$1	287	94	109	13.9270
cuggcacauaguagg	chr6:30692288-30692512(+)$1	224	26	41	12.9639
GCUUUGUCUCUAGCC	chr11:73685737-73686027(-)$1	290	7	22	12.9639
CCCUCACAGCUGCGG	chr19:54645773-54646066(+)$1	293	64	79	12.1602
AGGUUUCUUUCCCUU	chr19:45911819-45912145(-)$1	326	135	150	13.1773
uucuuuAUUCUGAAU	chr5:112227427-112227712(-)$1	285	92	107	13.1977
UGAUGCUGUUUUCAC	chr22:22118295-22118598(-)$1	303	12	27	13.8154
CUGAUGCCCUGCAGC	chr7:43689413-43689750(-)$1	337	218	233	12.9732
ucuUUAUCCAUGGAA	chr1:28300658-28300941(-)$1	283	172	187	13.7612
UUUACUCUAUCAAAU	chr7:92242778-92243089(-)$1	311	116	131	12.3542
UCUCAUCUCUCAGAC	chr12:57451081-57451410(-)$1	329	277	292	12.9732
UACUUGUCAAUGUAU	chr3:10168208-10168466(+)$1	258	19	34	13.7612
aucuuucuccugaua	chr1:67413154-67413472(+)$1	318	165	180	13.1977
GCCCUCUCCAUGGCU	chr19:18280139-18280465(+)$1	326	243	258	13.1977
ucuccuuuucuagaa	chr7:73108558-73108810(+)$1	252	227	242	12.3542
UAGUAACACUUCUGA	chr11:58386396-58386659(+)$1	263	221	236	12.3437
AGUCUUUGCUCAGUG	chr10:102120793-102121049(+)$1	256	192	207	12.2484
aggccuacuuuccug	chr7:149186552-149186847(-)$1	295	254	269	12.9732
GGAAAUAAAACUCCC	chr3:75779288-75779593(-)$1	305	15	30	13.1977
GGAACCAUUUGUCCA	chr1:113669263-113669550(+)$1	287	243	258	12.9732

#DB
(((........))).	chr10:102122116-102122386(+)$1	1	164	179	13.9270
.((........))..	chr7:149187754-149188044(-)$1	1	70	85	12.2367
.((........)).)	chr3:99569631-99569892(+)$1	1	33	48	12.5377
.((........))))	chr11:6504389-6504832(+)$1	1	149	164	12.7175
(((........))).	chr8:103876233-103876462(-)$1	1	176	191	13.1977
(((........))))	chr2:85547702-85548014(-)$1	1	205	220	12.3437
.((........))..	chr3:184034315-184034616(+)$1	1	53	68	12.3453
(((........))))	chr6:2961117-2961428(-)$1	1	207	222	12.3437
(((........))))	chr12:62730060-62730360(+)$1	1	4	19	13.6506
(((........))))	chr7:73110968-73111290(+)$1	1	101	116	12.3437
(((........))))	chr7:73609803-73610040(+)$1	1	18	33	12.9732
(((........))))	chr5:64850943-64851253(-)$1	1	61	76	12.9732
(((........))..	chr2:85546950-85547221(-)$1	1	191	206	12.1256
(((........))))	chr22:22050719-22050980(+)$1	1	202	217	12.9732
(((........))))	chr4:26434635-26434979(+)$1	1	20	35	12.9639
(((........))).	chr7:149186707-149187063(-)$1	1	34	49	13.1977
(((........))))	chr2:71215001-71215279(-)$1	1	96	111	12.9732
(((........))))	chr19:45912059-45912320(-)$1	1	149	164	12.9732
..(........)...	chr2:48132203-48132483(-)$1	1	198	213	12.7933
(((........))))	chr17:79878698-79878989(-)$1	1	32	47	12.0599
(.(........))))	chr6:27223663-27223965(+)$1	1	69	84	13.4628
(((........))))	chr12:8249950-8250230(+)$1	1	141	156	12.3542
(((........))))	chr2:85547555-85547814(-)$1	1	5	20	12.3437
(((........))))	chrX:62569263-62569569(-)$1	1	98	113	12.3542
(((........))).	chr19:54960624-54960923(+)$1	1	123	138	13.7612
(.(........))))	chr6:27223540-27223815(+)$1	1	192	207	13.4628
(((........))).	chr5:112227519-112227848(-)$1	1	228	243	13.1977
(((........))).	chr19:54378126-54378416(+)$1	1	242	257	13.1977
(((........))).	chr8:103876074-103876364(-)$1	1	191	206	13.9270
.((........)).)	chr3:33132486-33132758(-)$1	1	204	219	12.5377
(((........))).	chr17:30808950-30809251(+)$1	1	237	252	13.1977
(((........))))	chr7:73609770-73610003(+)$1	1	51	66	12.9732
(((........))))	chr18:32918100-32918411(-)$1	1	6	21	13.0395
(((........))))	chr19:45911945-45912205(-)$1	1	195	210	13.1773
.((........))))	chr19:45911700-45911969(-)$1	1	114	129	12.7175
(((........))).	chr7:92242695-92242961(-)$1	1	156	171	13.1977
(((........))))	chr4:71655674-71655933(+)$1	1	39	54	12.9732
(((........))))	chr7:143002961-143003256(+)$1	1	23	38	12.9732
(((........))).	chr7:106849874-106850165(-)$1	1	98	113	13.9270
(((........))))	chr19:54377803-54378081(+)$1	1	188	203	12.9732
(((........))))	chr19:54645284-54645558(+)$1	1	117	132	13.0395
(((........))).	chr22:20067973-20068227(+)$1	1	21	36	13.9270
(((........))).	chr10:102122186-102122473(+)$1	1	94	109	13.9270
(((........))))	chr6:30692288-30692512(+)$1	1	26	41	12.9639
(((........))))	chr11:73685737-73686027(-)$1	1	7	22	12.9639
(((........).))	chr19:54645773-54646066(+)$1	1	64	79	12.1602
(((........))))	chr19:45911819-45912145(-)$1	1	135	150	13.1773
(((........))).	chr5:112227427-112227712(-)$1	1	92	107	13.1977
(((........))))	chr22:22118295-22118598(-)$1	1	12	27	13.8154
(((........))))	chr7:43689413-43689750(-)$1	1	218	233	12.9732
(((........))).	chr1:28300658-28300941(-)$1	1	172	187	13.7612
(((........))))	chr7:92242778-92243089(-)$1	1	116	131	12.3542
(((........))))	chr12:57451081-57451410(-)$1	1	277	292	12.9732
(((........))).	chr3:10168208-10168466(+)$1	1	19	34	13.7612
(((........))).	chr1:67413154-67413472(+)$1	1	165	180	13.1977
(((........))).	chr19:18280139-18280465(+)$1	1	243	258	13.1977
(((........))))	chr7:73108558-73108810(+)$1	1	227	242	12.3542
(((........))))	chr11:58386396-58386659(+)$1	1	221	236	12.3437
(.(........).))	chr10:102120793-102121049(+)$1	1	192	207	12.2484
(((........))))	chr7:149186552-149186847(-)$1	1	254	269	12.9732
(((........))).	chr3:75779288-75779593(-)$1	1	15	30	13.1977
(((........))))	chr1:113669263-113669550(+)$1	1	243	258	12.9732

#PSSM
c : 0.35	d : 0.20	[ : 0.08	f : 0.08	e : 0.08	g : 0.04	i : 0.03	= : 0.03	b : 0.03	$ : 0.01	" : 0.01	h : 0.01	
c : 0.32	d : 0.20	b : 0.12	f : 0.08	e : 0.06	g : 0.04	[ : 0.04	i : 0.03	= : 0.03	" : 0.01	h : 0.01	
c : 0.32	d : 0.20	b : 0.11	f : 0.08	a : 0.08	e : 0.06	g : 0.04	i : 0.03	= : 0.03	h : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.32	d : 0.20	b : 0.11	f : 0.08	a : 0.08	e : 0.06	g : 0.04	i : 0.03	= : 0.03	h : 0.01	
c : 0.35	d : 0.20	b : 0.11	f : 0.08	e : 0.06	g : 0.04	i : 0.03	= : 0.03	] : 0.03	4 : 0.01	h : 0.01	
c : 0.38	d : 0.20	f : 0.08	e : 0.06	g : 0.04	2 : 0.03	] : 0.03	i : 0.03	= : 0.03	b : 0.03	3 : 0.01	4 : 0.01	h : 0.01	
d : 0.20	: : 0.16	] : 0.08	2 : 0.08	c : 0.08	f : 0.08	e : 0.06	b : 0.04	g : 0.04	a : 0.03	i : 0.03	= : 0.03	3 : 0.01	4 : 0.01	h : 0.01	

#score	804.8825677023498
#seq	62
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_UTR_m1_run1.txt

#BEAR
ggggggg[a[eeeee[cccmmmmccc]eeeeea]gggggg	chr6:30584869-30585103(-)$1	234	7	47	13.4317
iiiiiiiii"""fffffflllffffff4444iiiiiiiii	chr17:79866305-79866559(-)$1	254	201	241	12.8087
ii============"""bbnnnnnbb333===========	chr2:242276808-242277091(+)$1	283	211	251	19.6726
ee"""ffffff[bbccccccmmmmccc333ccc22bb]ff	chr7:99754489-99754779(-)$1	290	10	50	12.2414
ffff!!eeeee[bb"""bbnnnnnbb333bb]eeeee]ff	chr5:138629682-138629974(+)$1	292	88	128	13.3484
ddbbeeeee[ccc[eeeeennnnneeeee]ccc333eeee	chr10:102759612-102759888(+)$1	276	41	81	13.4713
eeeeeeeeee[ccc[cccooooooccc]ccc]eeeeefff	chr8:144911102-144911351(-)$1	249	48	88	12.9659
e!!iiiiiiiiiccc[cccooooooccc]ccc333iiiii	chr3:184037332-184037588(+)$1	256	67	107	17.8170
ggggggg[cccdddd[aooooooa]dddd]ccc22ggggg	chr16:2301278-2301543(-)$1	265	146	186	14.7947
==========ccc!!ddddnnnnndddd333cccddddmm	chr19:14675713-14676021(+)$1	308	152	192	15.6208
[bb==========[ccc[bblllbb]ccc==========]	chr16:89627188-89627443(+)$1	255	32	72	15.8160
gggg!!ccc[ccc[ddddbbnnnnnbb]dddd]ccc]ccc	chr2:85827971-85828251(-)$1	280	177	217	12.9870
gggg!!ffffff"""cccoooooocccffffff22ggggg	chr15:65822966-65823295(+)$1	329	256	296	14.5186
iiiiiiiii[ccc"""cccnnnnnccc333ccc22iiiii	chr3:48670970-48671180(-)$1	210	3	43	19.9548
gg[ggggggg[a[bb[cccooooooccc]bb]a22ggggg	chr19:18547562-18547825(-)$1	263	91	131	15.5018
dggggggg[ccc!!eeeeennnnneeeee]ccc22ggggg	chr17:80213172-80213442(-)$1	270	53	93	15.6536
========!!bb[ffffffnnnnnffffff]bb]======	chr9:90254559-90254868(+)$1	309	42	82	15.2326
b[bb[gggggggeeeee[annnnna]eeeee]gggggggb	chr19:47104590-47104871(+)$1	281	14	54	13.9743
d[dddd[aiiiiiiiii[annnnna]iiiiiiiii4444a	chr2:220093914-220094165(-)$1	251	71	111	14.5412
hhhh[bb[eeeeeccccccnnnnnccc]ccc]eeeee]bb	chr17:79868839-79869083(-)$1	244	89	129	13.3801
FFFFFggggggg!!a!!bboooooobb4444a22gggggg	chr20:61584303-61584530(+)$1	227	173	213	12.9335
dda[ggggggg[dddd[bbnnnnnbbddddggggggg]a2	chr9:139904690-139904982(-)$1	292	204	244	14.1958
iiiiiii[a[ccc[cccrrrrrrrrrccc]ccc]a]iiii	chr19:45873512-45873783(-)$1	271	208	248	15.2563
============!!a[ddddmmmmdddda===========	chr1:155279654-155279958(+)$1	304	131	171	16.4195
=========ggggggg!!annnnna22ggggggg]=====	chr12:58005555-58005826(+)$1	271	122	162	17.4166
=======[a[dddd[ddddoooooodddd]dddd]a]===	chrX:128977316-128977590(-)$1	274	60	100	15.2729
e!!bb[===========nnnnn===========22bb444	chr2:177134278-177134538(+)$1	260	175	215	13.6528
d[ccc[ddddccc"""cccnnnnnccc333ccc]dddd]c	chr11:802926-803202(-)$1	276	160	200	15.7517
eeeee[ccc"""ccc[bbnnnnnbbccc22ccc]eeeee]	chr3:8669180-8669448(-)$1	268	8	48	13.2992
[gggggggccc[dddd[bblllbb]dddd]ccc]gggggg	chr10:102729235-102729492(+)$1	257	53	93	13.4881
::ggggggg!!ccc####ccclllccc333ccc22ggggg	chr8:67579820-67580128(+)$1	308	191	231	13.9433
ggggggg[bbccc!!ddddnnnnndddd]ccc]bb22ggg	chr1:100732104-100732480(+)$1	376	140	180	14.6344
=============[a[ddddllldddd]a]==========	chr16:22335709-22335959(+)$1	250	67	107	17.3494
ee!!eeeee[ccc"""ddddooooooddddccc]eeeee3	chr19:1271985-1272270(+)$1	285	179	219	13.1100
bb[ccc[bb[bbccc[cccooooooccc22ccc]bb]bb]	chr20:2639090-2639337(-)$1	247	33	73	12.9827
cccccc!!eeeee"""bboooooobb333eeeee22ccc:	chr2:219523867-219524164(-)$1	297	171	211	12.2141
##bb!!a[ggggggg[cccnnnnnccc]ggggggga22bb	chr18:657575-657870(+)$1	295	167	207	14.7399
iiiiiiii!!ccc[ccc[bbmmmmbb]cccccciiiiiii	chr4:2243540-2243844(-)$1	304	100	140	14.8002
==========a[ccc"""bbmmmmbb333ccc]a]=====	chr8:30242608-30242857(+)$1	249	137	177	16.1114
ffffff"""eeeee[ddddnnnnndddd]eeeee4444ff	chr22:32009128-32009470(+)$1	342	114	154	12.5609
[==========!!avvvvvvvvvvvvva22==========	chrX:41193677-41193948(+)$1	271	170	210	13.2463
[gggggggccc[dddd[bbmmmmbb]ddddccc333gggg	chrX:20284802-20285015(-)$1	213	152	192	13.2219
==========xxxxxxxxxxxxxxx===============	chr3:49052624-49052865(+)$1	241	138	178	15.3014
[bb[==========!!ccclllccc==========]bbdd	chr10:94451814-94452170(+)$1	356	244	284	14.8498
dd"""==========[cccqqqqqqqqccc==========	chr22:19165251-19165485(-)$1	234	14	54	13.0719
hiiiiiiiiibb[bb[ddddllldddd]bb]bb]iiiiii	chr17:42401841-42402093(-)$1	252	146	186	13.2532
[gggggggdddd!!a[cccnnnnnccc]a]dddd]ggggg	chr12:117479535-117479901(-)$1	366	256	296	16.5060
============"""dddd!!ammmma22dddd333====	chr19:47287223-47287524(-)$1	301	67	107	13.9569
eeee[eeeee[dddd[cccnnnnnccc]dddd]eeeee33	chr3:184033027-184033282(+)$1	255	44	84	13.8392
gccc[eeeee[eeeeecccnnnnnccc]eeeeeeeeee]c	chr19:17970653-17970926(+)$1	273	190	230	13.6050
iiiiiiiii!!ccc[bbbbnnnnnbb]bbccciiiiiiii	chr22:42017973-42018223(+)$1	250	9	49	16.2859
a[==========[dddd[ammmma]dddd]==========	chr9:140347551-140347806(-)$1	255	116	156	15.8217

#otherMatches

#Seq PSSM
GGGCGUUUCACUAGCACGUUUGGGCGCGUUGGGCGGCGUC	chr6:30584869-30585103(-)$1	234	7	47	13.4317
CGUGAGGGGAGCGUCCAGGCCCUGGGCCAUGUUCCUCACG	chr17:79866305-79866559(-)$1	254	201	241	12.8087
UAAUUUGAGAGAGAAGAGUUUUGUAUGUAUUUUUUUUAAA	chr2:242276808-242277091(+)$1	283	211	251	19.6726
AGUUAUCUACCUGUCAUGCCCGAUGGCUCUGUGCUGCUGG	chr7:99754489-99754779(-)$1	290	10	50	12.2414
GGAGAUUUUGGGUGAAGAGGUGCGCUGACCGGCCGAGCUU	chr5:138629682-138629974(+)$1	292	88	128	13.3484
GCGCCUGUGGAGCGCUGGGGGCGGCCUGGGGCUGAGCAUG	chr10:102759612-102759888(+)$1	276	41	81	13.4713
cgggggcggggcgggcgcgcgccggcggccggcucgcggc	chr8:144911102-144911351(-)$1	249	48	88	12.9659
GGAGGUGUCAGGCAGGCAUUAGUAUAUGGUUGGGCCCUGA	chr3:184037332-184037588(+)$1	256	67	107	17.8170
cggagcgggcggccggcggcggagacggcgcgcggcgcUU	chr16:2301278-2301543(-)$1	265	146	186	14.7947
CUUCUCUGACAGAUCUGCCAGCUCGGCAACUUCUCCAUCC	chr19:14675713-14676021(+)$1	308	152	192	15.6208
AGCGUUCGGCCGCUGCCCGGGCUCUAGGCGCGGCCGGACG	chr16:89627188-89627443(+)$1	255	32	72	15.8160
UGUCCUUGGGUCUCAGGAACAAUAAGUAUCCUAAGAGCCA	chr2:85827971-85828251(-)$1	280	177	217	12.9870
GCAGAUCUCGGGCCGGGGGCACAACCCCCCGAGGGCUGCA	chr15:65822966-65823295(+)$1	329	256	296	14.5186
CUUAGGGCCUGGAAAAAUCAGGUAGGUAACUCUCUGGUCC	chr3:48670970-48671180(-)$1	210	3	43	19.9548
GGAGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUC	chr19:18547562-18547825(-)$1	263	91	131	15.5018
GCUGGGGCCAAGCCUGGAGGACCUCUUCAACUUCUGCUCC	chr17:80213172-80213442(-)$1	270	53	93	15.6536
GGCAGAUAUGUGGUAAGGAGUAUGUCCUUGGUGUUGUUUG	chr9:90254559-90254868(+)$1	309	42	82	15.2326
GACGCGCGGCGGAGCUGGAACUGCUGCAGCUGCUGCCGCC	chr19:47104590-47104871(+)$1	281	14	54	13.9743
GAcgggggcgcgcgcgggcgccggggccgcgcgcgAGGUU	chr2:220093914-220094165(-)$1	251	71	111	14.5412
CUGCCGGGAGGGUCGGGCUGCAGAGGCUCCGCGCCCUGCC	chr17:79868839-79869083(-)$1	244	89	129	13.3801
GUGUUCCUGGGGCUCUUCCAGGCAGGGCUAUGUUCCCCAG	chr20:61584303-61584530(+)$1	227	173	213	12.9335
CUGUGCCUGGGUGUGCGUCCUGGCGAGUGCUUCGGGCUCC	chr9:139904690-139904982(-)$1	292	204	244	14.1958
CUUCUCUGGGCUCGACGACCGGGCACUGUGGAGGCGGGAG	chr19:45873512-45873783(-)$1	271	208	248	15.2563
GGAGGGGAGCAGCUGAUCAGGUUUCUGACUUGUUUUUCUU	chr1:155279654-155279958(+)$1	304	131	171	16.4195
AUGCGGGGGGGGCACAAAGGGGGUCGCUGUGCCUGUCCCC	chr12:58005555-58005826(+)$1	271	122	162	17.4166
ACGUGGCGGGgcgugugugaguguguacgagcguguggcu	chrX:128977316-128977590(-)$1	274	60	100	15.2729
GGGGUACAGGGCUGGAGCUUUCCUCCAGCCUUGCGGCAUU	chr2:177134278-177134538(+)$1	260	175	215	13.6528
GCCUUUGAGACUCCCUCAGUGGCUUUGUCAGAGUUCUCUG	chr11:802926-803202(-)$1	276	160	200	15.7517
GCGCAAAGCCAAGCAGUCCCGGAGAUGUCAGCUGUGCGCG	chr3:8669180-8669448(-)$1	268	8	48	13.2992
UGCUGUGGGGCCGCGGAGCCGCGCGUCGCUGUCUCUAUGG	chr10:102729235-102729492(+)$1	257	53	93	13.4881
AAGGGGGAAAACAGUUGAUUCUCGGAAGCUCUGCCUUCUC	chr8:67579820-67580128(+)$1	308	191	231	13.9433
CUGGGGCAUCGGGAGUCCGAGUGGUGGAACCCAGAAGGUC	chr1:100732104-100732480(+)$1	376	140	180	14.6344
AGGGGAGGGGGCUGGCUGUGCCUCACGCUGGGCCCCCUCC	chr16:22335709-22335959(+)$1	250	67	107	17.3494
GCCCAGAAGAGGCGCAUCUGUCCUCUCAGAGCCAUUUCUA	chr19:1271985-1272270(+)$1	285	179	219	13.1100
GGACCAUGGUCACCUUGCUGGGUAGAGCCUAGGUUGUCCU	chr20:2639090-2639337(-)$1	247	33	73	12.9827
GCUGGGAACUCUCGGAAGGAGGUACUGAAGGGAGCACCCA	chr2:219523867-219524164(-)$1	297	171	211	12.2141
AUGCCUGUGGCCGGCUCGGAGCUGCCGCGCCGGCCCUUGC	chr18:657575-657870(+)$1	295	167	207	14.7399
GGUGUGGGGCUGGAGGAGUGGCCGCGAUCCCCGUCUGCAC	chr4:2243540-2243844(-)$1	304	100	140	14.8002
cggggcgcggcggUGGAAGAAGGUUCAGGCAUGGCCCGUG	chr8:30242608-30242857(+)$1	249	137	177	16.1114
CAGGCCUUAGCCCUGCCUUGGGUGGAGGGAGGGCACCUGG	chr22:32009128-32009470(+)$1	342	114	154	12.5609
GCGCGAAUCCCGACUGAUUAGUGACCUGGGGGGGUUUGCG	chrX:41193677-41193948(+)$1	271	170	210	13.2463
ccgccgccgccgccgccgccgcugccgUGGGGCUCgggcg	chrX:20284802-20285015(-)$1	213	152	192	13.2219
CACAGACAGCAUGGAGCAGGGAUGGGCUGUCUGUGCCCAU	chr3:49052624-49052865(+)$1	241	138	178	15.3014
GACAGCUCUGGGGUCUGGCCAGGCCGCUCCAGGGCAGUGG	chr10:94451814-94452170(+)$1	356	244	284	14.8498
CCCAAGGCGGCCGUCAGGUGAGGCCCGGCCGGUGGCUGCU	chr22:19165251-19165485(-)$1	234	14	54	13.0719
GGGGCCGGGAGUGUCGCCGAGGGUCGGGGAGACGUCCUGG	chr17:42401841-42402093(-)$1	252	146	186	13.2532
UCCUGGGUGACCAACAUCUCAGUAGGAAGGGGUCAACCUG	chr12:117479535-117479901(-)$1	366	256	296	16.5060
GGGGUUGGGAGGCCCUGGUAACGAUGGACACUGACUCUUC	chr19:47287223-47287524(-)$1	301	67	107	13.9569
GGUUCCCCGGCGGCAGGCGUAUCCUGUGUGCCCCUGGGCC	chr3:184033027-184033282(+)$1	255	44	84	13.8392
UGCAUAAGUGGCGUGGGCCGGGUUGGUGCCGCGCGCUUCU	chr19:17970653-17970926(+)$1	273	190	230	13.6050
CUUUCGCCUAGUGAGCAGUAGCCAACAUGUCAGGGUGGGA	chr22:42017973-42018223(+)$1	250	9	49	16.2859
UGGCCAGGAUAGGAGGUGCUGCCGGGCCUGCUGUCCUGGU	chr9:140347551-140347806(-)$1	255	116	156	15.8217

#DB
(((((((.(.(((((.(((....))).)))))).))))))	chr6:30584869-30585103(-)$1	1	7	47	13.4317
(((((((((...((((((...))))))....)))))))))	chr17:79866305-79866559(-)$1	1	201	241	12.8087
))((((((((((((...((.....))...)))))))))))	chr2:242276808-242277091(+)$1	1	211	251	19.6726
((...((((((.((((((((....)))...)))..)).))	chr7:99754489-99754779(-)$1	1	10	50	12.2414
((((..(((((.((...((.....))...)).))))).))	chr5:138629682-138629974(+)$1	1	88	128	13.3484
(((((((((.(((.(((((.....))))).)))...))))	chr10:102759612-102759888(+)$1	1	41	81	13.4713
)))))(((((.(((.(((......))).))).)))))(((	chr8:144911102-144911351(-)$1	1	48	88	12.9659
(..((((((((((((.(((......))).)))...)))))	chr3:184037332-184037588(+)$1	1	67	107	17.8170
(((((((.(((((((.(......).)))).)))..)))))	chr16:2301278-2301543(-)$1	1	146	186	14.7947
))))))))))(((..((((.....))))...)))((((..	chr19:14675713-14676021(+)$1	1	152	192	15.6208
.((((((((((((.(((.((...)).))))))))))))).	chr16:89627188-89627443(+)$1	1	32	72	15.8160
((((..(((.(((.((((((.....)).)))).))).)))	chr2:85827971-85828251(-)$1	1	177	217	12.9870
((((..((((((...(((......)))))))))..)))))	chr15:65822966-65823295(+)$1	1	256	296	14.5186
(((((((((.(((...(((.....)))...)))..)))))	chr3:48670970-48671180(-)$1	1	3	43	19.9548
((.(((((((.(.((.(((......))).)).)..)))))	chr19:18547562-18547825(-)$1	1	91	131	15.5018
((((((((.(((..(((((.....))))).)))..)))))	chr17:80213172-80213442(-)$1	1	53	93	15.6536
((((((((..((.((((((.....)))))).)).))))))	chr9:90254559-90254868(+)$1	1	42	82	15.2326
(.((.((((((((((((.(.....).))))).))))))))	chr19:47104590-47104871(+)$1	1	14	54	13.9743
(.((((.((((((((((.(.....).)))))))))....)	chr2:220093914-220094165(-)$1	1	71	111	14.5412
((((.((.(((((((((((.....))).))).))))).))	chr17:79868839-79869083(-)$1	1	89	129	13.3801
)))))(((((((..(..((......))....)..))))))	chr20:61584303-61584530(+)$1	1	173	213	12.9335
(((.(((((((.((((.((.....))))))))))))).).	chr9:139904690-139904982(-)$1	1	204	244	14.1958
(((((((.(.(((.(((.........))).))).).))))	chr19:45873512-45873783(-)$1	1	208	248	15.2563
((((((((((((..(.((((....))))))))))))))))	chr1:155279654-155279958(+)$1	1	131	171	16.4195
((((((((((((((((..(.....)..))))))).)))))	chr12:58005555-58005826(+)$1	1	122	162	17.4166
(((((((.(.((((.((((......)))).)))).).)))	chrX:128977316-128977590(-)$1	1	60	100	15.2729
(..((.(((((((((((.....)))))))))))..))...	chr2:177134278-177134538(+)$1	1	175	215	13.6528
(.(((.(((((((...(((.....)))...))).)))).)	chr11:802926-803202(-)$1	1	160	200	15.7517
(((((.(((...(((.((.....)))))..))).))))).	chr3:8669180-8669448(-)$1	1	8	48	13.2992
.((((((((((.((((.((...)).)))).))).))))))	chr10:102729235-102729492(+)$1	1	53	93	13.4881
..(((((((..(((....(((...)))...)))..)))))	chr8:67579820-67580128(+)$1	1	191	231	13.9433
(((((((.(((((..((((.....)))).))).))..)))	chr1:100732104-100732480(+)$1	1	140	180	14.6344
(((((((((((((.(.((((...)))).).))))))))))	chr16:22335709-22335959(+)$1	1	67	107	17.3494
((..(((((.(((...((((......))))))).))))).	chr19:1271985-1272270(+)$1	1	179	219	13.1100
((.(((.((.(((((.(((......)))..))).)).)).	chr20:2639090-2639337(-)$1	1	33	73	12.9827
)))(((..(((((...((......))...)))))..))).	chr2:219523867-219524164(-)$1	1	171	211	12.2141
..((..(.(((((((.(((.....))).))))))))..))	chr18:657575-657870(+)$1	1	167	207	14.7399
((((((((..(((.(((.((....)).)))))))))))))	chr4:2243540-2243844(-)$1	1	100	140	14.8002
(((((((((((.(((...((....))...))).).)))))	chr8:30242608-30242857(+)$1	1	137	177	16.1114
((((((...(((((.((((.....)))).)))))....))	chr22:32009128-32009470(+)$1	1	114	154	12.5609
.((((((((((..(.............)..))))))))))	chrX:41193677-41193948(+)$1	1	170	210	13.2463
.((((((((((.((((.((....)).)))))))...))))	chrX:20284802-20285015(-)$1	1	152	192	13.2219
((((((((((...............)))))))))))))))	chr3:49052624-49052865(+)$1	1	138	178	15.3014
.((.((((((((((..(((...))))))))))))).))))	chr10:94451814-94452170(+)$1	1	244	284	14.8498
((...((((((((((.(((........)))))))))))))	chr22:19165251-19165485(-)$1	1	14	54	13.0719
)(((((((((((.((.((((...)))).)).)).))))))	chr17:42401841-42402093(-)$1	1	146	186	13.2532
.(((((((((((..(.(((.....))).).)))).)))))	chr12:117479535-117479901(-)$1	1	256	296	16.5060
((((((((((((...((((..(....)..))))...))))	chr19:47287223-47287524(-)$1	1	67	107	13.9569
((((.(((((.((((.(((.....))).)))).)))))..	chr3:184033027-184033282(+)$1	1	44	84	13.8392
((((.(((((.((((((((.....))).)))))))))).)	chr19:17970653-17970926(+)$1	1	190	230	13.6050
(((((((((..(((.((((.....)).)))))))))))))	chr22:42017973-42018223(+)$1	1	9	49	16.2859
(.((((((((((.((((.(....).)))).))))))))))	chr9:140347551-140347806(-)$1	1	116	156	15.8217

#PSSM
= : 0.17	g : 0.13	e : 0.13	i : 0.11	d : 0.11	[ : 0.11	f : 0.03	b : 0.03	h : 0.03	F : 0.01	: : 0.01	c : 0.01	# : 0.01	a : 0.01	
g : 0.19	= : 0.19	i : 0.13	e : 0.09	[ : 0.07	d : 0.05	b : 0.05	f : 0.03	! : 0.03	c : 0.03	h : 0.01	F : 0.01	: : 0.01	# : 0.01	
= : 0.23	g : 0.19	i : 0.11	b : 0.09	e : 0.05	! : 0.05	c : 0.05	" : 0.03	f : 0.03	[ : 0.03	d : 0.01	h : 0.01	F : 0.01	a : 0.01	
= : 0.24	g : 0.21	i : 0.13	b : 0.07	c : 0.07	e : 0.05	" : 0.03	f : 0.03	[ : 0.03	d : 0.01	h : 0.01	F : 0.01	! : 0.01	
= : 0.26	g : 0.19	i : 0.13	! : 0.07	e : 0.07	[ : 0.07	c : 0.05	" : 0.03	d : 0.01	F : 0.01	b : 0.01	f : 0.01	
= : 0.28	g : 0.23	i : 0.13	e : 0.09	! : 0.07	[ : 0.05	f : 0.03	c : 0.03	d : 0.01	b : 0.01	
= : 0.30	g : 0.23	i : 0.13	e : 0.11	f : 0.03	c : 0.03	[ : 0.03	b : 0.01	d : 0.01	! : 0.01	a : 0.01	" : 0.01	
= : 0.28	g : 0.17	[ : 0.13	i : 0.11	e : 0.11	f : 0.03	c : 0.03	a : 0.01	d : 0.01	b : 0.01	! : 0.01	" : 0.01	
= : 0.26	e : 0.15	i : 0.11	g : 0.11	c : 0.09	a : 0.05	f : 0.03	! : 0.03	d : 0.03	b : 0.03	[ : 0.01	" : 0.01	
= : 0.24	[ : 0.15	e : 0.13	g : 0.11	c : 0.07	! : 0.07	i : 0.05	" : 0.03	f : 0.03	d : 0.03	b : 0.01	
c : 0.24	= : 0.19	e : 0.09	g : 0.09	[ : 0.07	b : 0.05	" : 0.03	f : 0.03	i : 0.03	d : 0.03	! : 0.03	a : 0.01	x : 0.01	
c : 0.24	= : 0.17	[ : 0.11	e : 0.09	d : 0.07	g : 0.07	b : 0.05	" : 0.03	i : 0.03	f : 0.01	a : 0.01	! : 0.01	x : 0.01	
c : 0.30	e : 0.11	= : 0.11	d : 0.11	! : 0.09	[ : 0.07	b : 0.03	" : 0.03	g : 0.03	f : 0.01	i : 0.01	x : 0.01	
c : 0.15	d : 0.13	[ : 0.11	! : 0.11	" : 0.11	e : 0.07	= : 0.07	b : 0.07	f : 0.03	g : 0.03	i : 0.01	a : 0.01	x : 0.01	
c : 0.17	" : 0.15	d : 0.13	e : 0.09	[ : 0.07	a : 0.07	! : 0.05	f : 0.03	b : 0.03	g : 0.03	= : 0.03	i : 0.01	# : 0.01	v : 0.01	x : 0.01	
[ : 0.24	d : 0.19	" : 0.13	c : 0.13	e : 0.07	f : 0.03	! : 0.03	i : 0.01	g : 0.01	= : 0.01	# : 0.01	v : 0.01	x : 0.01	b : 0.01	
c : 0.36	d : 0.21	" : 0.05	e : 0.05	[ : 0.05	b : 0.05	f : 0.03	! : 0.03	a : 0.01	i : 0.01	= : 0.01	# : 0.01	v : 0.01	x : 0.01	
c : 0.30	d : 0.19	b : 0.17	[ : 0.09	f : 0.03	e : 0.03	o : 0.01	r : 0.01	! : 0.01	n : 0.01	# : 0.01	" : 0.01	v : 0.01	x : 0.01	
c : 0.28	b : 0.21	d : 0.17	o : 0.07	a : 0.07	e : 0.03	n : 0.03	l : 0.01	f : 0.01	r : 0.01	v : 0.01	x : 0.01	
n : 0.42	o : 0.17	b : 0.07	d : 0.07	m : 0.05	l : 0.05	c : 0.03	r : 0.01	v : 0.01	x : 0.01	q : 0.01	! : 0.01	
n : 0.44	o : 0.19	m : 0.13	l : 0.11	r : 0.01	c : 0.01	v : 0.01	x : 0.01	q : 0.01	! : 0.01	
n : 0.44	o : 0.19	m : 0.13	l : 0.11	f : 0.01	r : 0.01	v : 0.01	x : 0.01	q : 0.01	a : 0.01	
n : 0.42	o : 0.19	m : 0.15	l : 0.07	f : 0.01	r : 0.01	= : 0.01	b : 0.01	v : 0.01	x : 0.01	c : 0.01	q : 0.01	
n : 0.40	o : 0.17	m : 0.09	b : 0.07	c : 0.03	a : 0.03	d : 0.03	f : 0.01	r : 0.01	= : 0.01	l : 0.01	v : 0.01	x : 0.01	q : 0.01	
c : 0.24	b : 0.19	o : 0.11	d : 0.11	] : 0.05	a : 0.05	f : 0.03	e : 0.03	n : 0.01	r : 0.01	= : 0.01	v : 0.01	x : 0.01	q : 0.01	m : 0.01	
c : 0.30	d : 0.19	b : 0.17	] : 0.07	= : 0.05	f : 0.03	e : 0.03	r : 0.01	2 : 0.01	o : 0.01	v : 0.01	q : 0.01	m : 0.01	
c : 0.32	d : 0.24	3 : 0.07	] : 0.05	e : 0.05	= : 0.05	f : 0.03	b : 0.03	i : 0.01	2 : 0.01	v : 0.01	q : 0.01	a : 0.01	
d : 0.21	] : 0.17	3 : 0.15	c : 0.15	e : 0.07	= : 0.05	4 : 0.03	f : 0.03	i : 0.01	g : 0.01	a : 0.01	2 : 0.01	b : 0.01	
3 : 0.17	d : 0.17	c : 0.11	e : 0.09	] : 0.07	2 : 0.07	a : 0.05	= : 0.05	4 : 0.03	f : 0.03	g : 0.03	b : 0.03	i : 0.01	
] : 0.17	c : 0.15	= : 0.11	d : 0.11	e : 0.09	3 : 0.09	b : 0.05	2 : 0.05	4 : 0.03	f : 0.03	g : 0.03	i : 0.01	
c : 0.38	= : 0.19	e : 0.09	d : 0.09	g : 0.05	4 : 0.03	b : 0.03	] : 0.03	3 : 0.01	f : 0.01	i : 0.01	
c : 0.36	= : 0.19	] : 0.09	d : 0.09	e : 0.07	g : 0.05	i : 0.03	b : 0.03	f : 0.01	a : 0.01	
c : 0.28	= : 0.19	e : 0.11	] : 0.07	g : 0.07	i : 0.05	d : 0.05	a : 0.03	b : 0.03	3 : 0.01	f : 0.01	2 : 0.01	
] : 0.17	= : 0.17	2 : 0.17	e : 0.13	i : 0.07	3 : 0.07	g : 0.07	c : 0.03	d : 0.03	b : 0.01	a : 0.01	
= : 0.19	2 : 0.17	e : 0.13	g : 0.11	i : 0.09	3 : 0.07	] : 0.07	d : 0.03	b : 0.03	c : 0.01	a : 0.01	4 : 0.01	
g : 0.21	= : 0.21	e : 0.13	i : 0.11	b : 0.05	3 : 0.05	d : 0.03	4 : 0.03	] : 0.03	a : 0.03	2 : 0.03	c : 0.01	
g : 0.23	= : 0.23	e : 0.15	i : 0.13	b : 0.05	] : 0.05	d : 0.03	4 : 0.03	2 : 0.03	c : 0.01	
= : 0.24	g : 0.23	i : 0.13	e : 0.09	] : 0.07	4 : 0.05	d : 0.03	c : 0.03	b : 0.03	f : 0.01	2 : 0.01	
= : 0.24	g : 0.23	i : 0.13	f : 0.07	e : 0.05	b : 0.05	c : 0.03	4 : 0.03	] : 0.03	m : 0.01	a : 0.01	d : 0.01	3 : 0.01	
= : 0.23	g : 0.21	i : 0.13	f : 0.07	] : 0.05	c : 0.05	b : 0.05	3 : 0.03	e : 0.01	m : 0.01	a : 0.01	2 : 0.01	4 : 0.01	: : 0.01	d : 0.01	

#score	760.8268052790906
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_UTR_m3_run2.txt

#BEAR
dd[eeeeevvvvvvvvvvvvveeeee	chr5:158634782-158635048(-)$1	266	228	254	22.9912
$$$eeeeewwwwwwwwwwwwwweeee	chr8:30300010-30300320(+)$1	310	31	57	21.7553
"""fffffftttttttttttffffff	chr1:20237075-20237337(+)$1	262	26	52	24.4871
ffffffffvvvvvvvvvvvvvfffff	chr15:64793418-64793688(+)$1	270	87	113	23.4157
[dddd[ccctttttttttttccc]dd	chr17:79879177-79879434(-)$1	257	31	57	22.9065
g$$$$$cccyyyyyyyyyyyyyyyyc	chr11:47544899-47545144(-)$1	245	182	208	19.7486
iiiiiiiiiuuuuuuuuuuuuiiiii	chr11:57531324-57531577(+)$1	253	193	219	24.1823
iiiiiiiivvvvvvvvvvvvviiiii	chr16:1360088-1360325(+)$1	237	201	227	23.8393
ee[fffffftttttttttttffffff	chrX:17755979-17756226(+)$1	247	162	188	23.8906
ccc[eeeeeyyyyyyyyyyyyyyyye	chr7:157130188-157130472(+)$1	284	15	41	20.5560
bb[ddddvvvvvvvvvvvvvddddbb	chr16:1726605-1726925(+)$1	320	43	69	20.8171
cccbb[cccvvvvvvvvvvvvvccc]	chr11:102322889-102323127(-)$1	238	84	110	22.7884
ggg[eeeeeuuuuuuuuuuuueeeee	chr16:4664126-4664432(-)$1	306	195	221	23.7572
cc[cccccctttttttttttccc]cc	chr6:89791739-89792012(+)$1	273	116	142	23.8523
=========ttttttttttt======	chr12:125398510-125398770(-)$1	260	90	116	24.5494
ia!!eeeeettttttttttteeeee2	chr5:73935754-73935995(-)$1	241	27	53	23.4457
!!a[ddddwwwwwwwwwwwwwwdddd	chr20:23357365-23357622(-)$1	257	162	188	21.5483
========xxxxxxxxxxxxxxx===	chr20:24986864-24987128(-)$1	264	4	30	17.4065
eeeeeddddtttttttttttdddd]e	chr2:181846026-181846306(+)$1	280	201	227	22.3911
d!!fffffftttttttttttffffff	chr20:23357029-23357273(-)$1	244	179	205	24.2350
d!!fffffftttttttttttffffff	chr20:23356832-23357157(-)$1	325	63	89	24.2350
iiiii[ccctttttttttttccc22i	chr5:149877611-149877895(+)$1	284	46	72	23.7007
CCCfffffftttttttttttffffff	chr19:54971361-54971572(+)$1	211	8	34	20.7223
###eeeeeuuuuuuuuuuuueeeee3	chr9:103114698-103114942(-)$1	244	145	171	23.1651
gggggg[bbvvvvvvvvvvvvvbb]g	chr1:31528056-31528297(-)$1	241	85	111	22.7146
###ffffffyyyyyyyyyyyyyyyyf	chr2:128568371-128568610(-)$1	239	134	160	21.3761
]ccc:ddddvvvvvvvvvvvvvdddd	chr2:74685335-74685595(+)$1	260	95	121	21.0196
GGGGGddddtttttttttttddddcc	chr2:201728917-201729172(-)$1	255	35	61	20.6892
:ffffffwwwwwwwwwwwwwwfffff	chr1:6259213-6259574(-)$1	361	284	310	21.0204
d!!fffffftttttttttttffffff	chr20:23356987-23357229(-)$1	242	135	161	24.2350
GGGGGddddtttttttttttddddcc	chr2:201728972-201729235(-)$1	263	98	124	20.6892
==ggggggguuuuuuuuuuuuggggg	chr19:54970712-54970936(+)$1	224	128	154	24.2570
gggffffffvvvvvvvvvvvvvffff	chr5:112349698-112349948(+)$1	250	160	186	23.8136
=========wwwwwwwwwwwwww===	chr12:70637739-70638047(+)$1	308	47	73	22.6331
cc!!cccvvvvvvvvvvvvvccc]cc	chr11:47545045-47545281(-)$1	236	184	210	22.6831
ffffffcccuuuuuuuuuuuuccc22	chr14:76620281-76620561(+)$1	280	24	50	23.2666
[eeeee!!auuuuuuuuuuuua22ee	chr2:75883551-75883821(+)$1	270	203	229	22.9818
"ffffff[auuuuuuuuuuuua]fff	chr1:20234834-20235134(+)$1	300	194	220	24.1154
=========ttttttttttt======	chr2:61763364-61763667(-)$1	303	85	111	24.5494
=========uuuuuuuuuuuu=====	chr4:1386310-1386543(+)$1	233	66	92	24.7861
dddddd[bbuuuuuuuuuuuubb]dd	chr20:62893923-62894174(+)$1	251	16	42	21.6160
:::fffffftttttttttttffffff	chr21:44269321-44269563(-)$1	242	213	239	21.3303
$$$$eeeeettttttttttteeeee3	chr1:204523715-204523960(+)$1	245	43	69	23.0340
b[ddddwwwwwwwwwwwwwwdddd]b	chr17:20905217-20905465(-)$1	248	191	217	19.3896
fffffddddtttttttttttdddd]f	chr21:44263213-44263448(-)$1	235	127	153	22.8584
[gggggggvvvvvvvvvvvvvggggg	chr11:33280100-33280329(+)$1	229	8	34	23.8317
$$$fffffftttttttttttffffff	chr3:187455608-187455836(-)$1	228	10	36	23.8815
=========ttttttttttt======	chr12:125398478-125398709(-)$1	231	29	55	24.5494
=========uuuuuuuuuuuu=====	chr4:1386225-1386465(+)$1	240	151	177	24.7861
hhhhhhhhwwwwwwwwwwwwwwhhhh	chr21:44269749-44270001(-)$1	252	221	247	19.2090
:::fffffftttttttttttffffff	chr21:44269508-44269768(-)$1	260	0	26	21.3303
===ffffffuuuuuuuuuuuufffff	chr12:133302652-133302994(-)$1	342	125	151	24.5013
c####ddddtttttttttttdddd44	chr16:18817743-18817972(-)$1	229	76	102	22.8870
ffffeeeeeuuuuuuuuuuuueeeee	chr6:131321685-131321972(-)$1	287	248	274	23.2694

#otherMatches

#Seq PSSM
UGCGGUUUGGGAGAUGAUGAGAAACC	chr5:158634782-158635048(-)$1	266	228	254	22.9912
UUAAUUGCAUUCUCCCACCCCCGCAG	chr8:30300010-30300320(+)$1	310	31	57	21.7553
AAGAAUUUUAAAUGUUAGUCGAAGUU	chr1:20237075-20237337(+)$1	262	26	52	24.4871
GUGGUAGCUCAUGCUUUCUUUGCUGU	chr15:64793418-64793688(+)$1	270	87	113	23.4157
CUUUGAUAUCUUUUGCAAUUGUACCG	chr17:79879177-79879434(-)$1	257	31	57	22.9065
AUAUCUGCUUCAUCUUCUCUUUCUUG	chr11:47544899-47545144(-)$1	245	182	208	19.7486
AUAAGGGAUGCAGAUAAGUAAAUCUU	chr11:57531324-57531577(+)$1	253	193	219	24.1823
GCGCUUGCUGGGGCCCUGAACGUGAG	chr16:1360088-1360325(+)$1	237	201	227	23.8393
UUUGAGUUUAAAGAAUUGACAAACUC	chrX:17755979-17756226(+)$1	247	162	188	23.8906
GCGUGGAGCGCCUUCUUUUUCUAAGG	chr7:157130188-157130472(+)$1	284	15	41	20.5560
GAAUCCCUCUGACGUUGCCUGGGAUC	chr16:1726605-1726925(+)$1	320	43	69	20.8171
GGUGCUUCCCCUCUCGCUUUUUGGAU	chr11:102322889-102323127(-)$1	238	84	110	22.7884
GCGCACACGUCCAUGUGCAUUUGUGU	chr16:4664126-4664432(-)$1	306	195	221	23.7572
CUGUGGUACUUCGUGUUAGUGUGUCC	chr6:89791739-89792012(+)$1	273	116	142	23.8523
CCGUUCUGUUGGCUUAUAAUGCAGGG	chr12:125398510-125398770(-)$1	260	90	116	24.5494
GCCGCUGCCCUCCCACAGCAGGCAGA	chr5:73935754-73935995(-)$1	241	27	53	23.4457
UGCAUGGCAAAAAUUUAGAAUAGCCA	chr20:23357365-23357622(-)$1	257	162	188	21.5483
UCUUGGGUGAGUGAACCUGUGAAGCC	chr20:24986864-24987128(-)$1	264	4	30	17.4065
AGUGUUGUGUUUAAAGGCUUUACGUG	chr2:181846026-181846306(+)$1	280	201	227	22.3911
CUUGAGAAUGAAUGUAUGUAAUUUUC	chr20:23357029-23357273(-)$1	244	179	205	24.2350
CUUGAGAAUGAAUGUAUGUAAUUUUC	chr20:23356832-23357157(-)$1	325	63	89	24.2350
CUGCGGGCUUGAGAAAUGGUGGCAGC	chr5:149877611-149877895(+)$1	284	46	72	23.7007
UGUGUGUGGAAAGGGUAGGGCUGCAC	chr19:54971361-54971572(+)$1	211	8	34	20.7223
UUAGCCCGGAGUGUGUGAAUCGGGCC	chr9:103114698-103114942(-)$1	244	145	171	23.1651
UUUCGUGUUGAUUGAAUGAGGGAAGA	chr1:31528056-31528297(-)$1	241	85	111	22.7146
CACAGGUUGGAGGAACUGGGAGAAUC	chr2:128568371-128568610(-)$1	239	134	160	21.3761
UACAAGCUCUUGUUGUCUGGGUGAGC	chr2:74685335-74685595(+)$1	260	95	121	21.0196
GCGGCGCGCCCCUCUUUCCUGCGCGG	chr2:201728917-201729172(-)$1	255	35	61	20.6892
GGGCGGGGAAGAAGAACGGGACCUGC	chr1:6259213-6259574(-)$1	361	284	310	21.0204
CUUGAGAAUGAAUGUAUGUAAUUUUC	chr20:23356987-23357229(-)$1	242	135	161	24.2350
GCGGCGCGCCCCUCUUUCCUGCGCGG	chr2:201728972-201729235(-)$1	263	98	124	20.6892
GCAUAGUUUGGAGCUAGGGAGGGACU	chr19:54970712-54970936(+)$1	224	128	154	24.2570
CAUGCAGUCAGUAAACCUGUGAGACU	chr5:112349698-112349948(+)$1	250	160	186	23.8136
AUACACGUAUAUCAUCUGCCAGUUAU	chr12:70637739-70638047(+)$1	308	47	73	22.6331
ACUUAGGGAUCUCUUCUGCACCUUGU	chr11:47545045-47545281(-)$1	236	184	210	22.6831
GUGAGACAGUCUCUAAUCUUUCUGGA	chr14:76620281-76620561(+)$1	280	24	50	23.2666
aaaauauuguugcuccauuuucuuug	chr2:75883551-75883821(+)$1	270	203	229	22.9818
AGUUCUGGAAUUCUGAUAGUGUGUAG	chr1:20234834-20235134(+)$1	300	194	220	24.1154
CUGGAUAAUCCCUAGUGUAUGUUAUC	chr2:61763364-61763667(-)$1	303	85	111	24.5494
uagaugucauuccacugccucuggca	chr4:1386310-1386543(+)$1	233	66	92	24.7861
CUCAUUGGCUUCCCGGCGCCUGUGGA	chr20:62893923-62894174(+)$1	251	16	42	21.6160
UACCAGGCAAAACUCCUUGGUGCCUG	chr21:44269321-44269563(-)$1	242	213	239	21.3303
GAUGAGGGGGAAUAUUGAGGCCCCUA	chr1:204523715-204523960(+)$1	245	43	69	23.0340
UCUGCCUCUGCUUUACAUUUGGUGUA	chr17:20905217-20905465(-)$1	248	191	217	19.3896
cgaugagcuuguucggauguagcucc	chr21:44263213-44263448(-)$1	235	127	153	22.8584
UGUUGCCGGCUUCUCUCGUUACGGUG	chr11:33280100-33280329(+)$1	229	8	34	23.8317
UUAGGGGAAAGUGUGCUGUAUUCCCC	chr3:187455608-187455836(-)$1	228	10	36	23.8815
CCGUUCUGUUGGCUUAUAAUGCAGGG	chr12:125398478-125398709(-)$1	231	29	55	24.5494
uagaugucauuccacugccucuggca	chr4:1386225-1386465(+)$1	240	151	177	24.7861
AUGGUGGAUGUUUUCAUGUUGUUCCG	chr21:44269749-44270001(-)$1	252	221	247	19.2090
UUCAUGUUGUUCCGCCGUCUCAGCAU	chr21:44269508-44269768(-)$1	260	0	26	21.3303
UAGCCUUCACCUUGACUUGAAUGAAG	chr12:133302652-133302994(-)$1	342	125	151	24.5013
CUUGUGUAGUUAUUUCUCUUUUACUG	chr16:18817743-18817972(-)$1	229	76	102	22.8870
GGCAAGUGGUAUUUCUGUUUUUUACU	chr6:131321685-131321972(-)$1	287	248	274	23.2694

#DB
((.(((((.............)))))	chr5:158634782-158635048(-)$1	1	228	254	22.9912
...(((((..............))))	chr8:30300010-30300320(+)$1	1	31	57	21.7553
...((((((...........))))))	chr1:20237075-20237337(+)$1	1	26	52	24.4871
))((((((.............)))))	chr15:64793418-64793688(+)$1	1	87	113	23.4157
.((((.(((...........))).))	chr17:79879177-79879434(-)$1	1	31	57	22.9065
(.....(((................)	chr11:47544899-47545144(-)$1	1	182	208	19.7486
(((((((((............)))))	chr11:57531324-57531577(+)$1	1	193	219	24.1823
((((((((.............)))))	chr16:1360088-1360325(+)$1	1	201	227	23.8393
((.((((((...........))))))	chrX:17755979-17756226(+)$1	1	162	188	23.8906
(((.(((((................)	chr7:157130188-157130472(+)$1	1	15	41	20.5560
((.((((.............))))))	chr16:1726605-1726925(+)$1	1	43	69	20.8171
)))((.(((.............))).	chr11:102322889-102323127(-)$1	1	84	110	22.7884
(((.(((((............)))))	chr16:4664126-4664432(-)$1	1	195	221	23.7572
((.((((((...........))).))	chr6:89791739-89792012(+)$1	1	116	142	23.8523
(((((((((...........))))))	chr12:125398510-125398770(-)$1	1	90	116	24.5494
((..(((((...........))))).	chr5:73935754-73935995(-)$1	1	27	53	23.4457
..(.((((..............))))	chr20:23357365-23357622(-)$1	1	162	188	21.5483
((((((((...............)))	chr20:24986864-24987128(-)$1	1	4	30	17.4065
(((((((((...........)))).)	chr2:181846026-181846306(+)$1	1	201	227	22.3911
(..((((((...........))))))	chr20:23357029-23357273(-)$1	1	179	205	24.2350
(..((((((...........))))))	chr20:23356832-23357157(-)$1	1	63	89	24.2350
(((((.(((...........)))..)	chr5:149877611-149877895(+)$1	1	46	72	23.7007
(((((((((...........))))))	chr19:54971361-54971572(+)$1	1	8	34	20.7223
...(((((............))))).	chr9:103114698-103114942(-)$1	1	145	171	23.1651
((((((.((.............)).)	chr1:31528056-31528297(-)$1	1	85	111	22.7146
...((((((................)	chr2:128568371-128568610(-)$1	1	134	160	21.3761
.))).((((.............))))	chr2:74685335-74685595(+)$1	1	95	121	21.0196
(((((((((...........))))((	chr2:201728917-201729172(-)$1	1	35	61	20.6892
.((((((..............)))))	chr1:6259213-6259574(-)$1	1	284	310	21.0204
(..((((((...........))))))	chr20:23356987-23357229(-)$1	1	135	161	24.2350
(((((((((...........))))((	chr2:201728972-201729235(-)$1	1	98	124	20.6892
))(((((((............)))))	chr19:54970712-54970936(+)$1	1	128	154	24.2570
(((((((((.............))))	chr5:112349698-112349948(+)$1	1	160	186	23.8136
(((((((((..............)))	chr12:70637739-70638047(+)$1	1	47	73	22.6331
((..(((.............))).))	chr11:47545045-47545281(-)$1	1	184	210	22.6831
(((((((((............)))..	chr14:76620281-76620561(+)$1	1	24	50	23.2666
.(((((..(............)..))	chr2:75883551-75883821(+)$1	1	203	229	22.9818
.((((((.(............).)))	chr1:20234834-20235134(+)$1	1	194	220	24.1154
(((((((((...........))))))	chr2:61763364-61763667(-)$1	1	85	111	24.5494
(((((((((............)))))	chr4:1386310-1386543(+)$1	1	66	92	24.7861
((((((.((............)).))	chr20:62893923-62894174(+)$1	1	16	42	21.6160
...((((((...........))))))	chr21:44269321-44269563(-)$1	1	213	239	21.3303
....(((((...........))))).	chr1:204523715-204523960(+)$1	1	43	69	23.0340
(.((((..............)))).)	chr17:20905217-20905465(-)$1	1	191	217	19.3896
(((((((((...........)))).)	chr21:44263213-44263448(-)$1	1	127	153	22.8584
.(((((((.............)))))	chr11:33280100-33280329(+)$1	1	8	34	23.8317
...((((((...........))))))	chr3:187455608-187455836(-)$1	1	10	36	23.8815
(((((((((...........))))))	chr12:125398478-125398709(-)$1	1	29	55	24.5494
(((((((((............)))))	chr4:1386225-1386465(+)$1	1	151	177	24.7861
((((((((..............))))	chr21:44269749-44270001(-)$1	1	221	247	19.2090
...((((((...........))))))	chr21:44269508-44269768(-)$1	1	0	26	21.3303
(((((((((............)))))	chr12:133302652-133302994(-)$1	1	125	151	24.5013
(....((((...........))))..	chr16:18817743-18817972(-)$1	1	76	102	22.8870
))))(((((............)))))	chr6:131321685-131321972(-)$1	1	248	274	23.2694

#PSSM
= : 0.16	d : 0.09	c : 0.09	f : 0.07	g : 0.07	i : 0.07	$ : 0.05	[ : 0.05	: : 0.05	" : 0.03	e : 0.03	b : 0.03	# : 0.03	G : 0.03	! : 0.01	C : 0.01	] : 0.01	h : 0.01	
= : 0.16	f : 0.11	c : 0.09	$ : 0.07	g : 0.07	! : 0.07	d : 0.05	i : 0.05	e : 0.05	# : 0.05	G : 0.03	: : 0.03	" : 0.01	b : 0.01	a : 0.01	C : 0.01	[ : 0.01	h : 0.01	
= : 0.14	f : 0.11	g : 0.09	! : 0.09	[ : 0.07	$ : 0.07	d : 0.05	i : 0.05	c : 0.05	# : 0.05	e : 0.03	G : 0.03	: : 0.03	" : 0.01	a : 0.01	C : 0.01	h : 0.01	
f : 0.33	= : 0.12	e : 0.09	d : 0.07	i : 0.05	[ : 0.05	g : 0.05	$ : 0.03	c : 0.03	! : 0.03	G : 0.03	b : 0.01	h : 0.01	# : 0.01	
f : 0.31	e : 0.18	= : 0.12	d : 0.09	i : 0.05	g : 0.05	c : 0.03	G : 0.03	$ : 0.01	b : 0.01	: : 0.01	h : 0.01	# : 0.01	
f : 0.29	d : 0.18	e : 0.16	= : 0.12	[ : 0.05	g : 0.05	i : 0.03	c : 0.03	$ : 0.01	h : 0.01	
f : 0.27	e : 0.14	d : 0.14	c : 0.12	= : 0.12	i : 0.03	[ : 0.03	g : 0.03	! : 0.01	w : 0.01	h : 0.01	
f : 0.24	e : 0.14	= : 0.12	d : 0.12	c : 0.11	i : 0.03	v : 0.03	b : 0.03	w : 0.03	g : 0.03	! : 0.01	[ : 0.01	h : 0.01	
f : 0.22	v : 0.11	c : 0.11	= : 0.11	d : 0.11	w : 0.09	e : 0.09	b : 0.03	a : 0.03	i : 0.01	x : 0.01	u : 0.01	g : 0.01	
t : 0.40	u : 0.22	v : 0.18	w : 0.11	y : 0.05	x : 0.01	
t : 0.40	u : 0.22	v : 0.18	w : 0.11	y : 0.05	x : 0.01	
t : 0.40	u : 0.22	v : 0.18	w : 0.11	y : 0.05	x : 0.01	
t : 0.40	u : 0.22	v : 0.18	w : 0.11	y : 0.05	x : 0.01	
t : 0.40	u : 0.22	v : 0.18	w : 0.11	y : 0.05	x : 0.01	
t : 0.40	u : 0.22	v : 0.18	w : 0.11	y : 0.05	x : 0.01	
t : 0.40	u : 0.22	v : 0.18	w : 0.11	y : 0.05	x : 0.01	
t : 0.40	u : 0.22	v : 0.18	w : 0.11	y : 0.05	x : 0.01	
t : 0.40	u : 0.22	v : 0.18	w : 0.11	y : 0.05	x : 0.01	
t : 0.40	u : 0.22	v : 0.18	w : 0.11	y : 0.05	x : 0.01	
t : 0.40	u : 0.22	v : 0.18	w : 0.11	y : 0.05	x : 0.01	
u : 0.20	f : 0.16	v : 0.14	d : 0.12	w : 0.09	c : 0.07	y : 0.05	= : 0.05	e : 0.05	x : 0.01	
f : 0.22	d : 0.12	e : 0.11	c : 0.09	= : 0.09	w : 0.07	v : 0.07	y : 0.05	i : 0.03	g : 0.03	a : 0.03	x : 0.01	b : 0.01	
f : 0.24	d : 0.16	e : 0.12	c : 0.11	= : 0.09	y : 0.05	i : 0.03	b : 0.03	g : 0.03	x : 0.01	w : 0.01	2 : 0.01	] : 0.01	h : 0.01	
f : 0.25	d : 0.16	e : 0.12	= : 0.12	] : 0.07	y : 0.05	i : 0.03	c : 0.03	2 : 0.03	g : 0.03	b : 0.01	h : 0.01	
f : 0.25	e : 0.14	= : 0.12	c : 0.09	d : 0.07	] : 0.07	y : 0.05	i : 0.03	2 : 0.03	g : 0.03	b : 0.01	h : 0.01	4 : 0.01	
f : 0.29	e : 0.12	= : 0.12	c : 0.09	d : 0.07	i : 0.05	g : 0.05	b : 0.03	2 : 0.03	3 : 0.03	] : 0.01	h : 0.01	4 : 0.01	

#score	1225.6931860577959
#seq	54
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF322GPD_SF3B1_transcript_m2_run2.txt

#BEAR
dddd"""ddddmmmmdddd]ddddddd	chr11:62609000-62609214(-)$1	214	49	76	16.3305
ffff"""ddddooooooddddffffff	chr22:43011211-43011418(+)$1	207	35	62	16.6003
!ccc"""ddddnnnnndddd]ccc22d	chr2:97559869-97560127(-)$1	258	205	232	13.2538
ffff"""dddd[eeeee[ccc[eeeee	chr19:49607675-49607932(+)$1	257	119	146	11.7950
eeee####cccooooooccc333eeee	chr22:43011259-43011464(+)$1	205	151	178	14.1707
ffff"""dddd[eeeee[ccc[eeeee	chr19:49607732-49607979(+)$1	247	62	89	11.7950
ffff"""ddddooooooddddffffff	chr22:43011206-43011408(+)$1	202	40	67	16.6003
dddd####cccooooooccc333dddd	chr22:43011221-43011459(+)$1	238	189	216	14.5170
eeee"""a[a[ammmma]a]a333eee	chr2:97559938-97560192(-)$1	254	30	57	12.2239
dddd"""ddddmmmmdddd]ddddddd	chr11:62609109-62609352(-)$1	243	187	214	16.3305
dddd"""ddddmmmmdddd]ddddddd	chr11:62609093-62609309(-)$1	216	144	171	16.3305
dddd"""ddddmmmmdddd]ddddddd	chr11:62609060-62609293(-)$1	233	128	155	16.3305
dddd"""ddddmmmmdddd]ddddddd	chr11:62609026-62609260(-)$1	234	95	122	16.3305
ffff"""ddddooooooddddffffff	chr22:43011194-43011406(+)$1	212	52	79	16.6003
ffff"""ddddooooooddddffffff	chr22:43011171-43011394(+)$1	223	75	102	16.6003

#otherMatches

#Seq PSSM
uggaauaggagcuugcuccguccacuc	chr11:62609000-62609214(-)$1	214	49	76	16.3305
CUUAUGCCUUAAACUUAUGAGUAAGGA	chr22:43011211-43011418(+)$1	207	35	62	16.6003
AGGUGGGUCUGUGUCUCAGAAGCCAGU	chr2:97559869-97560127(-)$1	258	205	232	13.2538
GGGACACGGGGCGGGGAUUCUGUAGAG	chr19:49607675-49607932(+)$1	257	119	146	11.7950
GCCUAAAAAGUAGACUGACUGUGGGGU	chr22:43011259-43011464(+)$1	205	151	178	14.1707
GGGACACGGGGCGGGGAUUCUGUAGAG	chr19:49607732-49607979(+)$1	247	62	89	11.7950
CUUAUGCCUUAAACUUAUGAGUAAGGA	chr22:43011206-43011408(+)$1	202	40	67	16.6003
GCCUAAAAAGUAGACUGACUGUGGGGU	chr22:43011221-43011459(+)$1	238	189	216	14.5170
gggugaguggguggggggugggaggcc	chr2:97559938-97560192(-)$1	254	30	57	12.2239
uggaauaggagcuugcuccguccacuc	chr11:62609109-62609352(-)$1	243	187	214	16.3305
uggaauaggagcuugcuccguccacuc	chr11:62609093-62609309(-)$1	216	144	171	16.3305
uggaauaggagcuugcuccguccacuc	chr11:62609060-62609293(-)$1	233	128	155	16.3305
uggaauaggagcuugcuccguccacuc	chr11:62609026-62609260(-)$1	234	95	122	16.3305
CUUAUGCCUUAAACUUAUGAGUAAGGA	chr22:43011194-43011406(+)$1	212	52	79	16.6003
CUUAUGCCUUAAACUUAUGAGUAAGGA	chr22:43011171-43011394(+)$1	223	75	102	16.6003

#DB
((((...((((....)))).)))))))	chr11:62609000-62609214(-)$1	1	49	76	16.3305
((((...((((......))))))))))	chr22:43011211-43011418(+)$1	1	35	62	16.6003
.(((...((((.....)))).)))..)	chr2:97559869-97560127(-)$1	1	205	232	13.2538
((((...((((.(((((.(((.(((((	chr19:49607675-49607932(+)$1	1	119	146	11.7950
((((....(((......)))...))))	chr22:43011259-43011464(+)$1	1	151	178	14.1707
((((...((((.(((((.(((.(((((	chr19:49607732-49607979(+)$1	1	62	89	11.7950
((((...((((......))))))))))	chr22:43011206-43011408(+)$1	1	40	67	16.6003
((((....(((......)))...))))	chr22:43011221-43011459(+)$1	1	189	216	14.5170
((((...(.(.(....).).)...)))	chr2:97559938-97560192(-)$1	1	30	57	12.2239
((((...((((....)))).)))))))	chr11:62609109-62609352(-)$1	1	187	214	16.3305
((((...((((....)))).)))))))	chr11:62609093-62609309(-)$1	1	144	171	16.3305
((((...((((....)))).)))))))	chr11:62609060-62609293(-)$1	1	128	155	16.3305
((((...((((....)))).)))))))	chr11:62609026-62609260(-)$1	1	95	122	16.3305
((((...((((......))))))))))	chr22:43011194-43011406(+)$1	1	52	79	16.6003
((((...((((......))))))))))	chr22:43011171-43011394(+)$1	1	75	102	16.6003

#PSSM
d : 0.39	f : 0.39	e : 0.13	! : 0.06	
d : 0.39	f : 0.39	e : 0.13	c : 0.06	
d : 0.39	f : 0.39	e : 0.13	c : 0.06	
d : 0.39	f : 0.39	e : 0.13	c : 0.06	
" : 0.86	# : 0.13	
" : 0.86	# : 0.13	
" : 0.86	# : 0.13	
d : 0.79	# : 0.13	a : 0.06	
d : 0.79	c : 0.13	[ : 0.06	
d : 0.79	c : 0.13	a : 0.06	
d : 0.79	c : 0.13	[ : 0.06	
o : 0.39	m : 0.33	[ : 0.13	n : 0.06	a : 0.06	
m : 0.39	o : 0.39	e : 0.13	n : 0.06	
m : 0.39	o : 0.39	e : 0.13	n : 0.06	
m : 0.39	o : 0.39	e : 0.13	n : 0.06	
o : 0.39	d : 0.33	e : 0.13	n : 0.06	m : 0.06	
d : 0.39	o : 0.39	e : 0.13	a : 0.06	
d : 0.66	[ : 0.13	c : 0.13	] : 0.06	
d : 0.66	c : 0.26	a : 0.06	
] : 0.39	d : 0.33	c : 0.26	
d : 0.60	c : 0.13	3 : 0.13	] : 0.06	a : 0.06	
d : 0.33	f : 0.26	3 : 0.20	[ : 0.13	c : 0.06	
d : 0.33	f : 0.26	3 : 0.20	e : 0.13	c : 0.06	
d : 0.39	f : 0.26	e : 0.20	c : 0.06	3 : 0.06	
d : 0.39	f : 0.26	e : 0.26	2 : 0.06	
d : 0.39	f : 0.26	e : 0.26	2 : 0.06	
d : 0.46	f : 0.26	e : 0.26	

#score	225.80981717991335
#seq	15
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_transcript_m2_run1.txt

#BEAR
ggggggg!!ddddlllddddggggggg]bb	chr2:159376545-159376830(+)$1	285	194	224	11.6415
:ggggggg[ddddmmmmdddd4444ggggg	chr19:56174873-56175114(+)$1	241	128	158	14.5447
###bb####ddddmmmmdddd333bb4444	chr12:9246545-9246752(-)$1	207	63	93	16.2233
=========ddddmmmmddddffffffbbm	chr22:50660894-50661168(-)$1	274	51	81	12.8548
ggggggg!!ddddmmmmdddd]ggggggg:	chr13:31726917-31727180(-)$1	263	60	90	13.9849
:::ffffffddddmmmmdddd333ffffff	chr20:25672950-25673219(-)$1	269	126	156	11.4234
[bb"""bb[ddddmmmmddddbb333bb]d	chr11:65193884-65194095(+)$1	211	12	42	13.6326
##eeeee!!ddddllldddd]eeeee333d	chr4:119736126-119736422(-)$1	296	152	182	11.1730
!bb[ccca!!cccmmmmccc22a]cccbbg	chr17:79526296-79526559(-)$1	263	207	237	11.1518
f!!eeeee[ddddmmmmdddd88888888e	chr7:26229936-26230193(-)$1	257	48	78	12.1154
ddd[bbcccddddmmmmdddd22ccc]bb]	chr2:74708518-74708768(-)$1	250	126	156	14.1883
dddd!!cccddddmmmmdddd]cccdddd4	chrX:73494137-73494358(-)$1	221	133	163	13.5198
[cccccc"""cccmmmmccc333ccc]ccc	chr2:209108193-209108460(-)$1	267	176	206	12.6907
gggggcccddddnnnnndddd>>>>>>>>>	chr4:113181808-113182040(+)$1	232	106	136	10.6602
ggg[ccc!!ddddmmmmdddd333ccc]gg	chr3:78959233-78959484(-)$1	251	65	95	16.9030
fffff!!a[ddddmmmmdddda22ffffff	chr16:28841062-28841284(+)$1	222	152	182	14.2478
ddd[bbbb[ddddmmmmdddd]bb22bb]d	chr16:2818326-2818551(+)$1	225	21	51	12.5393
ff"""bbbbddddmmmmdddd]bb]bb22f	chr6:24720248-24720514(-)$1	266	93	123	12.5090
c####ccc[ddddmmmmdddd]ccc333cc	chr3:57743518-57743799(+)$1	281	64	94	15.8148
eee"""ccc[cccmmmmccc333ccc4444	chr19:18963395-18963672(+)$1	277	125	155	12.3840
###ffffffddddmmmmdddd666666fff	chr2:29164222-29164469(+)$1	247	110	140	11.7687
cc"""bb[ddddnnnnndddd]bb333ccc	chr19:10906599-10906863(+)$1	264	150	180	11.5054
:eeeee"""ddddmmmmdddd]eeeee:ff	chr17:8132082-8132329(-)$1	247	111	141	12.1467
dddccc!!eeeeemmmmeeeee]ccc]ddd	chr17:74087009-74087268(-)$1	259	79	109	10.4047
"""ccc"""cccooooooccc333ccc]ee	chr2:234178535-234178781(+)$1	246	178	208	11.1851
e"""ccc[a[cccmmmmccc]a]ccc333e	chr8:17765550-17765806(-)$1	256	88	118	11.9152
eeee:ccc[ddddmmmmdddd]cccdddd[	chr17:27000282-27000538(+)$1	256	32	62	12.9239
eeeee[cccddddmmmmdddd22ccc]eee	chr10:43047118-43047377(-)$1	259	32	62	14.3282
:dddd####ddddmmmmdddd333dddd::	chr16:71956121-71956385(+)$1	264	146	176	12.7553
bb[accc[eeeeemmmmeeeee]ccc]a]b	chr10:105420734-105421001(-)$1	267	65	95	10.5277
fddddccc[ddddmmmmddddccc333ddd	chr16:277929-278197(-)$1	268	127	157	13.9176
cccccc"""ddddmmmmddddccc]cccff	chr11:62565996-62566307(-)$1	311	174	204	14.6044
========ddddammmma]dddd333====	chr7:97501123-97501416(-)$1	293	124	154	12.9962
ff####bb[ddddmmmmdddd22bb55555	chr17:6610111-6610397(-)$1	286	67	97	11.5394
eee[a!!ddddoooooodddd22aeeeee4	chr7:75045149-75045415(+)$1	266	127	157	10.9738
fffffbb!!ddddmmmmdddd333bb::dd	chr13:107209880-107210127(-)$1	247	180	210	13.5536
$$$$dddd[ddddmmmmdddddddd333gg	chr12:69667903-69668190(+)$1	287	224	254	12.9064
ccc$$$$$eeeeemmmmeeeee22ccc]dd	chr7:7277052-7277313(+)$1	261	95	125	10.4943
c!!dddd"""ddddllldddd333ddddcc	chr2:42396727-42396974(+)$1	247	19	49	12.5245
ggg[bb"""ddddmmmmdddd4444bb22g	chr5:179047647-179047867(-)$1	220	93	123	15.4519
=======[ddddnnnnndddd]========	chr21:44513222-44513474(-)$1	252	28	58	12.0431
fffffbb!!ddddmmmmdddd333bb::dd	chr13:107209802-107210073(-)$1	271	126	156	13.5536
eeeee"""ddddnnnnndddd333eeeee4	chr6:64289848-64290072(+)$1	224	184	214	12.0617
fffff####ddddmmmmdddd333ffffff	chrX:102940013-102940314(-)$1	301	205	235	15.4907
ddddccc!!ddddnnnnndddd22ccca[g	chr16:2809781-2810076(+)$1	295	154	184	11.2029
++ffffff[ddddmmmmddddffffff>>>	chr6:167426886-167427215(+)$1	329	62	92	11.5816
[ggggggg!!cccmmmmccc22ggggggg]	chr11:65199605-65199861(+)$1	256	159	189	10.9726
iii!!ccc[ddddmmmmdddd]ccciiiii	chrY:15026864-15027145(+)$1	281	30	60	15.1631
f:eeeee!!ddddmmmmdddd22eeeee:f	chr12:69663188-69663426(+)$1	238	26	56	12.3041
gggbb[cccddddmmmmdddd333ccc]bb	chr10:135214913-135215187(+)$1	274	200	230	15.1206
ccc[dddd[ddddmmmmddddddddccc::	chr16:28847434-28847742(+)$1	308	163	193	11.4343
ggg$$$$$ddddnnnnndddd4444ggggg	chr3:194174673-194174927(-)$1	254	217	247	11.8340
ccbb[ccc[ddddlllddddccc]bb]ccc	chr2:70455958-70456181(-)$1	223	140	170	11.2944

#otherMatches

#Seq PSSM
CCAGGGUGCCAACAGUGUUGACUCUGGUGU	chr2:159376545-159376830(+)$1	285	194	224	11.6415
AUGGCCUUUGAUGGCAUCAUCUUCCAGGGC	chr19:56174873-56175114(+)$1	241	128	158	14.5447
CACGGCCUUGUGUCAUAACACUCUCCACUU	chr12:9246545-9246752(-)$1	207	63	93	16.2233
GCCUCUGUUAUGGAGAACCAUCCUGGCCUG	chr22:50660894-50661168(-)$1	274	51	81	12.8548
UAGAUAAUUCAAAAUUUUUUGUUUGUUUGU	chr13:31726917-31727180(-)$1	263	60	90	13.9849
cccaugcuuucuguuuucaggcuagagcau	chr20:25672950-25673219(-)$1	269	126	156	11.4234
UGCUCUGUAUGGUAAGAACUAAUUCUGUUA	chr11:65193884-65194095(+)$1	211	12	42	13.6326
CCCAGGAGGCUUCCCUGGAGGUCCUGCACA	chr4:119736126-119736422(-)$1	296	152	182	11.1730
AGCACUGCACGUUCAUGAACCAGCCAGGCA	chr17:79526296-79526559(-)$1	263	207	237	11.1518
GUUGUUUAGGUUCUUUUGGACAAACAUGAU	chr7:26229936-26230193(-)$1	257	48	78	12.1154
AAGGAGCUGGCAUCUUUGUGUCACAGACUA	chr2:74708518-74708768(-)$1	250	126	156	14.1883
UCCACUGAUAUCUCAAAAGGUGAUCUGGAC	chrX:73494137-73494358(-)$1	221	133	163	13.5198
AUUGAAGAUUUUGCACACAGUUCCUUCCAA	chr2:209108193-209108460(-)$1	267	176	206	12.6907
UCUCUAGGCCUCUUACUGAGGAAGAAAUUG	chr4:113181808-113182040(+)$1	232	106	136	10.6602
AGUGGCUUGAAAUGUGAAUUUAACAGCAGC	chr3:78959233-78959484(-)$1	251	65	95	16.9030
UCAGCGAGAGCUGCGUGCGGCCCAGUUGGC	chr16:28841062-28841284(+)$1	222	152	182	14.2478
GGUGCUUGGCUCUUGGAGGAGGUAUGGGGA	chr16:2818326-2818551(+)$1	225	21	51	12.5393
GGACAGGGAGGGGAUUUCCCCGUCACCCAC	chr6:24720248-24720514(-)$1	266	93	123	12.5090
UCACCACAUUGUCCAGCGGCAUUGUUUAAC	chr3:57743518-57743799(+)$1	281	64	94	15.8148
ucccucccACAGCAGCUGCUCCCUGGCCAC	chr19:18963395-18963672(+)$1	277	125	155	12.3840
GACCUGGUACCCCAGCUGGGGACACUCUAC	chr2:29164222-29164469(+)$1	247	110	140	11.7687
ACCCCGGACUUGGCAUUCGAGGCCAUUGUG	chr19:10906599-10906863(+)$1	264	150	180	11.5054
CCCCAUAGGCUCCUGGUGGAGGAUGGGACU	chr17:8132082-8132329(-)$1	247	111	141	12.1467
CCUCCACUGUGUGUCCACGCACUUGGCAGG	chr17:74087009-74087268(-)$1	259	79	109	10.4047
GUAAGUAAAGAUAAAUGAAUCAAAACUGUG	chr2:234178535-234178781(+)$1	246	178	208	11.1851
cuuauguugucuguuuuuagucugcagaug	chr8:17765550-17765806(-)$1	256	88	118	11.9152
UUGUGGGAAGGUUUAAGAGCCCUCUGUACA	chr17:27000282-27000538(+)$1	256	32	62	12.9239
GGAUGGGAGGAGCAGAGGCUCGAUUUGUGU	chr10:43047118-43047377(-)$1	259	32	62	14.3282
aagcacuccaguaaacuugcuuuaugcuaa	chr16:71956121-71956385(+)$1	264	146	176	12.7553
GGGCGCCCUGGCCGCGGGGCCAUGGCUGGC	chr10:105420734-105421001(-)$1	267	65	95	10.5277
GGUGUGGGCAAGAAAACUUUUCCUUUAACA	chr16:277929-278197(-)$1	268	127	157	13.9176
CUCGGGUUUGGUAUAUUUGCUCCUAGAGCA	chr11:62565996-62566307(-)$1	311	174	204	14.6044
CGGUCCGGGUCCCUGCGGCGGACGGGUCGG	chr7:97501123-97501416(-)$1	293	124	154	12.9962
GAUCCUGGUGACUUUCUGGUUCUCCCCUUC	chr17:6610111-6610397(-)$1	286	67	97	11.5394
UGGAGGAUCCCGGGGCAGGGACACCUAGCC	chr7:75045149-75045415(+)$1	266	127	157	10.9738
GGCAGCCGAGGAGCACACUCUGCAGGACAC	chr13:107209880-107210127(-)$1	247	180	210	13.5536
UUUUGAUAAGACUUUGCAGUUUGUCUUUUU	chr12:69667903-69668190(+)$1	287	224	254	12.9064
uuauuucuuugcaaaccuguaguuuaaaga	chr7:7277052-7277313(+)$1	261	95	125	10.4943
GCAAGAUGGACGGUUUCGCCGGCAGUCUCG	chr2:42396727-42396974(+)$1	247	19	49	12.5245
UUAAUGUUUUCUUCCUAGAGACCUUCAAAU	chr5:179047647-179047867(-)$1	220	93	123	15.4519
GCUGCGCGUGUUGAGAGAGUGGGUGUGGUU	chr21:44513222-44513474(-)$1	252	28	58	12.0431
GGCAGCCGAGGAGCACACUCUGCAGGACAC	chr13:107209802-107210073(-)$1	271	126	156	13.5536
GUUUCAAAGAUUCCAACGGUCAUAGAAACA	chr6:64289848-64290072(+)$1	224	184	214	12.0617
cagaaucuuggguaagugccucccuucugu	chrX:102940013-102940314(-)$1	301	205	235	15.4907
GUCUGGGGgaggaaggaauccuuacccugg	chr16:2809781-2810076(+)$1	295	154	184	11.2029
AAAGAUUUCUAUUUUGUGGUAAAAUCUCAU	chr6:167426886-167427215(+)$1	329	62	92	11.5816
AUAAUGAUCAUGAACUCUUAGUAUCAUUGG	chr11:65199605-65199861(+)$1	256	159	189	10.9726
GUAAAAUAUUCAUUUUAGUGAUUAUUGCUU	chrY:15026864-15027145(+)$1	281	30	60	15.1631
UGUAUAGUUAAGCCAGCGUUUUUCUGUGUA	chr12:69663188-69663426(+)$1	238	26	56	12.3041
GGCCCAGCACUCUGUCAAGAGCUCUGCAGG	chr10:135214913-135215187(+)$1	274	200	230	15.1206
GGCAGGGCUGUCCCACAGGGCGCCCGCCGA	chr16:28847434-28847742(+)$1	308	163	193	11.4343
ACUGUUUUCAGGGCUAUCCUGUUAAAGUGC	chr3:194174673-194174927(-)$1	254	217	247	11.8340
GUGUUGACCAAGUAUAACUUGUCCGCUACU	chr2:70455958-70456181(-)$1	223	140	170	11.2944

#DB
(((((((..((((...))))))))))).))	chr2:159376545-159376830(+)$1	1	194	224	11.6415
.(((((((.((((....))))....)))))	chr19:56174873-56175114(+)$1	1	128	158	14.5447
...((....((((....))))...))....	chr12:9246545-9246752(-)$1	1	63	93	16.2233
)))))))))((((....))))((((((((.	chr22:50660894-50661168(-)$1	1	51	81	12.8548
(((((((..((((....)))).))))))).	chr13:31726917-31727180(-)$1	1	60	90	13.9849
...((((((((((....))))...))))))	chr20:25672950-25673219(-)$1	1	126	156	11.4234
.((...((.((((....))))))...)).)	chr11:65193884-65194095(+)$1	1	12	42	13.6326
..(((((..((((...)))).)))))...)	chr4:119736126-119736422(-)$1	1	152	182	11.1730
.((.((((..(((....)))..).))))))	chr17:79526296-79526559(-)$1	1	207	237	11.1518
(..(((((.((((....))))........)	chr7:26229936-26230193(-)$1	1	48	78	12.1154
(((.(((((((((....))))..))).)).	chr2:74708518-74708768(-)$1	1	126	156	14.1883
((((..(((((((....)))).))))))).	chrX:73494137-73494358(-)$1	1	133	163	13.5198
.((((((...(((....)))...))).)))	chr2:209108193-209108460(-)$1	1	176	206	12.6907
((((((((((((.....)))).........	chr4:113181808-113182040(+)$1	1	106	136	10.6602
(((.(((..((((....))))...))).))	chr3:78959233-78959484(-)$1	1	65	95	16.9030
(((((..(.((((....)))))..))))))	chr16:28841062-28841284(+)$1	1	152	182	14.2478
(((.((((.((((....)))).))..)).)	chr16:2818326-2818551(+)$1	1	21	51	12.5393
((...((((((((....)))).)).))..)	chr6:24720248-24720514(-)$1	1	93	123	12.5090
(....(((.((((....)))).)))...))	chr3:57743518-57743799(+)$1	1	64	94	15.8148
(((...(((.(((....)))...)))....	chr19:18963395-18963672(+)$1	1	125	155	12.3840
...((((((((((....))))......)))	chr2:29164222-29164469(+)$1	1	110	140	11.7687
((...((.((((.....)))).))...)))	chr19:10906599-10906863(+)$1	1	150	180	11.5054
.(((((...((((....)))).))))).((	chr17:8132082-8132329(-)$1	1	111	141	12.1467
((((((..(((((....))))).))).)))	chr17:74087009-74087268(-)$1	1	79	109	10.4047
...(((...(((......)))...))).))	chr2:234178535-234178781(+)$1	1	178	208	11.1851
(...(((.(.(((....))).).)))...)	chr8:17765550-17765806(-)$1	1	88	118	11.9152
)))).(((.((((....)))).)))((((.	chr17:27000282-27000538(+)$1	1	32	62	12.9239
(((((.(((((((....))))..))).)))	chr10:43047118-43047377(-)$1	1	32	62	14.3282
.((((....((((....))))...))))..	chr16:71956121-71956385(+)$1	1	146	176	12.7553
((.((((.(((((....))))).))).).)	chr10:105420734-105421001(-)$1	1	65	95	10.5277
((((((((.((((....)))))))...)))	chr16:277929-278197(-)$1	1	127	157	13.9176
((((((...((((....))))))).)))))	chr11:62565996-62566307(-)$1	1	174	204	14.6044
(((((((((((((....).))))...))))	chr7:97501123-97501416(-)$1	1	124	154	12.9962
((....((.((((....))))..)).....	chr17:6610111-6610397(-)$1	1	67	97	11.5394
(((.(..((((......))))..)))))).	chr7:75045149-75045415(+)$1	1	127	157	10.9738
)))))((..((((....))))...))..((	chr13:107209880-107210127(-)$1	1	180	210	13.5536
....((((.((((....))))))))...))	chr12:69667903-69668190(+)$1	1	224	254	12.9064
(((.....(((((....)))))..))).))	chr7:7277052-7277313(+)$1	1	95	125	10.4943
(..((((...((((...))))...))))))	chr2:42396727-42396974(+)$1	1	19	49	12.5245
(((.((...((((....))))....))..)	chr5:179047647-179047867(-)$1	1	93	123	15.4519
(((((((.((((.....)))).))))))))	chr21:44513222-44513474(-)$1	1	28	58	12.0431
)))))((..((((....))))...))..((	chr13:107209802-107210073(-)$1	1	126	156	13.5536
(((((...((((.....))))...))))).	chr6:64289848-64290072(+)$1	1	184	214	12.0617
(((((....((((....))))...))))))	chrX:102940013-102940314(-)$1	1	205	235	15.4907
))))(((..((((.....))))..)))(.(	chr16:2809781-2810076(+)$1	1	154	184	11.2029
..((((((.((((....))))))))))...	chr6:167426886-167427215(+)$1	1	62	92	11.5816
.(((((((..(((....)))..))))))).	chr11:65199605-65199861(+)$1	1	159	189	10.9726
(((..(((.((((....)))).))))))))	chrY:15026864-15027145(+)$1	1	30	60	15.1631
).(((((..((((....))))..))))).(	chr12:69663188-69663426(+)$1	1	26	56	12.3041
(((((.(((((((....))))...))).))	chr10:135214913-135215187(+)$1	1	200	230	15.1206
(((.((((.((((....)))))))))))..	chr16:28847434-28847742(+)$1	1	163	193	11.4343
(((.....((((.....))))....)))))	chr3:194174673-194174927(-)$1	1	217	247	11.8340
((((.(((.((((...))))))).)).)))	chr2:70455958-70456181(-)$1	1	140	170	11.2944

#PSSM
f : 0.16	g : 0.13	c : 0.13	e : 0.11	d : 0.09	: : 0.07	# : 0.05	= : 0.05	[ : 0.05	! : 0.01	" : 0.01	b : 0.01	$ : 0.01	+ : 0.01	i : 0.01	
g : 0.16	d : 0.13	c : 0.11	f : 0.11	e : 0.11	# : 0.07	= : 0.05	b : 0.05	: : 0.03	! : 0.03	" : 0.03	$ : 0.01	+ : 0.01	i : 0.01	
g : 0.16	e : 0.15	d : 0.13	f : 0.09	# : 0.07	c : 0.07	" : 0.07	= : 0.05	b : 0.05	! : 0.03	: : 0.01	[ : 0.01	$ : 0.01	i : 0.01	
f : 0.13	e : 0.13	[ : 0.13	g : 0.09	" : 0.09	d : 0.09	c : 0.07	b : 0.05	= : 0.05	$ : 0.05	# : 0.03	a : 0.01	! : 0.01	
c : 0.16	f : 0.13	e : 0.11	g : 0.09	b : 0.09	d : 0.09	" : 0.07	= : 0.05	! : 0.03	# : 0.03	$ : 0.03	: : 0.01	a : 0.01	[ : 0.01	
c : 0.28	b : 0.13	g : 0.07	# : 0.07	e : 0.07	= : 0.05	f : 0.05	" : 0.05	! : 0.05	d : 0.05	[ : 0.03	$ : 0.03	
c : 0.32	b : 0.13	" : 0.09	g : 0.07	# : 0.05	= : 0.05	f : 0.05	e : 0.05	! : 0.05	d : 0.05	$ : 0.03	
c : 0.20	! : 0.16	" : 0.13	b : 0.07	[ : 0.07	# : 0.05	f : 0.05	d : 0.05	g : 0.03	= : 0.03	a : 0.03	$ : 0.03	e : 0.01	
[ : 0.26	! : 0.18	d : 0.13	" : 0.11	c : 0.09	# : 0.05	e : 0.05	f : 0.03	= : 0.01	b : 0.01	a : 0.01	
d : 0.81	e : 0.05	! : 0.03	" : 0.03	[ : 0.03	c : 0.01	
d : 0.83	c : 0.11	e : 0.05	
d : 0.81	c : 0.11	e : 0.05	o : 0.01	
d : 0.69	c : 0.09	n : 0.09	e : 0.05	o : 0.03	a : 0.01	
m : 0.77	n : 0.11	l : 0.05	o : 0.03	d : 0.01	
m : 0.77	n : 0.11	l : 0.07	o : 0.03	
m : 0.77	n : 0.11	l : 0.07	o : 0.03	
m : 0.77	n : 0.11	d : 0.05	o : 0.03	l : 0.01	
d : 0.79	c : 0.09	e : 0.05	o : 0.01	a : 0.01	n : 0.01	
d : 0.81	c : 0.11	e : 0.05	] : 0.01	
d : 0.83	c : 0.11	e : 0.05	
d : 0.77	e : 0.05	] : 0.03	2 : 0.03	3 : 0.03	c : 0.03	g : 0.01	
3 : 0.24	] : 0.18	2 : 0.13	e : 0.07	d : 0.07	4 : 0.05	c : 0.05	f : 0.03	a : 0.03	g : 0.01	b : 0.01	8 : 0.01	> : 0.01	6 : 0.01	
3 : 0.24	2 : 0.15	c : 0.13	b : 0.07	g : 0.05	4 : 0.05	] : 0.05	d : 0.05	f : 0.03	e : 0.03	a : 0.01	8 : 0.01	> : 0.01	6 : 0.01	= : 0.01	
3 : 0.24	c : 0.24	b : 0.07	g : 0.05	4 : 0.05	e : 0.05	2 : 0.05	f : 0.03	] : 0.03	d : 0.03	8 : 0.01	> : 0.01	6 : 0.01	a : 0.01	= : 0.01	
c : 0.32	b : 0.09	f : 0.09	e : 0.09	3 : 0.07	d : 0.07	g : 0.05	4 : 0.05	] : 0.03	8 : 0.01	> : 0.01	2 : 0.01	6 : 0.01	= : 0.01	
c : 0.28	b : 0.11	3 : 0.11	g : 0.09	f : 0.09	e : 0.09	d : 0.07	8 : 0.01	> : 0.01	2 : 0.01	6 : 0.01	5 : 0.01	= : 0.01	i : 0.01	
c : 0.15	3 : 0.11	] : 0.11	g : 0.09	f : 0.09	b : 0.07	d : 0.07	e : 0.07	4 : 0.03	= : 0.03	: : 0.03	8 : 0.01	> : 0.01	6 : 0.01	5 : 0.01	i : 0.01	
d : 0.11	] : 0.09	b : 0.09	c : 0.09	g : 0.07	f : 0.07	3 : 0.07	e : 0.07	: : 0.05	4 : 0.03	> : 0.03	2 : 0.03	a : 0.03	= : 0.03	8 : 0.01	5 : 0.01	i : 0.01	
d : 0.13	g : 0.11	f : 0.11	b : 0.09	c : 0.09	e : 0.07	] : 0.05	: : 0.05	4 : 0.03	3 : 0.03	> : 0.03	2 : 0.03	= : 0.03	8 : 0.01	5 : 0.01	[ : 0.01	i : 0.01	
f : 0.15	d : 0.15	g : 0.13	4 : 0.09	c : 0.09	e : 0.07	b : 0.05	: : 0.05	] : 0.03	> : 0.03	= : 0.03	m : 0.01	[ : 0.01	5 : 0.01	i : 0.01	

#score	676.6844977632412
#seq	53
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800XSC_GNL3_transcript_m3_run2.txt

#BEAR
dddqqqqqqqqddd	chr19:893479-893691(+)$1	212	125	139	12.0272
gggqqqqqqqqggg	chr7:103029306-103029512(-)$1	206	66	80	12.3487
cccqqqqqqqqccc	chrM:488-713(+)$1	225	183	197	13.0301
cccqqqqqqqqccc	chrM:4193-4430(+)$1	237	183	197	13.0301
eeeqqqqqqqqeee	chr13:92003225-92003447(+)$1	222	167	181	11.8929
dddqqqqqqqqddd	chr11:106689580-106689788(-)$1	208	15	29	12.0272
gggqqqqqqqqggg	chr1:173835344-173835554(-)$1	210	135	149	12.3487
cccrrrrrrrrrcc	chr3:193373466-193373676(+)$1	210	83	97	7.9959
cccrrrrrrrrrcc	chr3:193373476-193373688(+)$1	212	73	87	7.9959
cccqqqqqqqqccc	chrM:516-721(+)$1	205	155	169	13.0301
cccqqqqqqqqccc	chr10:128256276-128256488(-)$1	212	10	24	13.0301
eeeqqqqqqqqeee	chr12:69236346-69236554(-)$1	208	30	44	11.8929
gggqqqqqqqqggg	chr1:173835354-173835573(-)$1	219	154	168	12.3487

#otherMatches

#Seq PSSM
uuucccucccagaa	chr19:893479-893691(+)$1	212	125	139	12.0272
CCAGAUUGGAAUGG	chr7:103029306-103029512(-)$1	206	66	80	12.3487
CUAUUAGCUCUUAG	chrM:488-713(+)$1	225	183	197	13.0301
gugccaccuaucac	chrM:4193-4430(+)$1	237	183	197	13.0301
CUGUAGAACUCCAG	chr13:92003225-92003447(+)$1	222	167	181	11.8929
uugaagcucuccaa	chr11:106689580-106689788(-)$1	208	15	29	12.0272
GUUAAUGGUUAAGC	chr1:173835344-173835554(-)$1	210	135	149	12.3487
UGAAUUGAUCCAUC	chr3:193373466-193373676(+)$1	210	83	97	7.9959
UGAAUUGAUCCAUC	chr3:193373476-193373688(+)$1	212	73	87	7.9959
CUAUUAGCUCUUAG	chrM:516-721(+)$1	205	155	169	13.0301
GCAUACAAACCUGC	chr10:128256276-128256488(-)$1	212	10	24	13.0301
CUUCUAUAAUAAAG	chr12:69236346-69236554(-)$1	208	30	44	11.8929
GUUAAUGGUUAAGC	chr1:173835354-173835573(-)$1	219	154	168	12.3487

#DB
(((........)))	chr19:893479-893691(+)$1	1	125	139	12.0272
(((........)))	chr7:103029306-103029512(-)$1	1	66	80	12.3487
(((........)))	chrM:488-713(+)$1	1	183	197	13.0301
(((........)))	chrM:4193-4430(+)$1	1	183	197	13.0301
(((........)))	chr13:92003225-92003447(+)$1	1	167	181	11.8929
(((........)))	chr11:106689580-106689788(-)$1	1	15	29	12.0272
(((........)))	chr1:173835344-173835554(-)$1	1	135	149	12.3487
(((.........))	chr3:193373466-193373676(+)$1	1	83	97	7.9959
(((.........))	chr3:193373476-193373688(+)$1	1	73	87	7.9959
(((........)))	chrM:516-721(+)$1	1	155	169	13.0301
(((........)))	chr10:128256276-128256488(-)$1	1	10	24	13.0301
(((........)))	chr12:69236346-69236554(-)$1	1	30	44	11.8929
(((........)))	chr1:173835354-173835573(-)$1	1	154	168	12.3487

#PSSM
c : 0.46	g : 0.23	d : 0.15	e : 0.15	
c : 0.46	g : 0.23	d : 0.15	e : 0.15	
c : 0.46	g : 0.23	d : 0.15	e : 0.15	
q : 0.84	r : 0.15	
q : 0.84	r : 0.15	
q : 0.84	r : 0.15	
q : 0.84	r : 0.15	
q : 0.84	r : 0.15	
q : 0.84	r : 0.15	
q : 0.84	r : 0.15	
q : 0.84	r : 0.15	
c : 0.30	g : 0.23	d : 0.15	e : 0.15	r : 0.15	
c : 0.46	g : 0.23	d : 0.15	e : 0.15	
c : 0.46	g : 0.23	d : 0.15	e : 0.15	

#score	152.9992040387077
#seq	13
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_CDS_m3_run1.txt

#BEAR
$$$eeeeemmmmeeeee	chr3:186337561-186337798(+)$1	237	134	151	6.4245
ee[bb[bbmmmmbbbbe	chr1:230839973-230840183(-)$1	210	134	151	6.9779
##ccc[bbmmmmbb]cc	chr2:216248653-216248935(-)$1	282	136	153	8.5375
ee[bb[bbmmmmbbbbe	chr1:230839951-230840164(-)$1	213	115	132	6.9779
[bb[ddddmmmmdddd]	chr7:45930047-45930262(+)$1	215	57	74	6.9094
hh!!ddddmmmmddddh	chr17:37856401-37856662(+)$1	261	223	240	6.9813
!gggggggmmmmggggg	chr17:64224115-64224331(-)$1	216	130	147	7.2187
dddbb[bbmmmmbb]bb	chr19:6682128-6682336(-)$1	208	96	113	6.9741
ddd[bboooooobb]dd	chr3:186336268-186336485(+)$1	217	31	48	6.2401
b[ddddbbmmmmbb]dd	chr11:68201145-68201387(+)$1	242	133	150	8.1275
e!!cccbbmmmmbb]cc	chr11:63676497-63676724(+)$1	227	61	78	8.5566
[a!!ddddmmmmdddda	chr2:216261766-216262039(-)$1	273	149	166	7.6673
""ccc[bbmmmmbb]cc	chr2:216300278-216300524(-)$1	246	47	64	8.6324
iiiiiiiimmmmiiiii	chrX:132888084-132888297(-)$1	213	172	189	7.3198
!!ddddooooooddddc	chr2:216236535-216236781(-)$1	246	73	90	6.5170
!!ffffffmmmmfffff	chr6:132271149-132271384(-)$1	235	156	173	6.2976
eeeee!!ammmma22ee	chr2:216270921-216271162(-)$1	241	170	187	7.1539
c"""ddddmmmmdddd2	chr1:955514-955786(+)$1	272	187	204	7.3251
ccdddd[ammmma]ddd	chr2:216243911-216244140(-)$1	229	183	200	7.5610
bb[eeeeemmmmeeeee	chr2:216259216-216259450(-)$1	234	135	152	6.2730
:dddd[bbmmmmbb]dd	chr2:216251327-216251623(-)$1	296	232	249	7.2282
[ccc[cccmmmmccc]c	chr9:124065095-124065404(+)$1	309	142	159	7.2887
e[ddddbbmmmmbb]dd	chr19:49993123-49993366(+)$1	243	85	102	8.3254
eee[bboooooobb]ee	chr3:186336248-186336468(+)$1	220	51	68	6.2842
ccc"""bbmmmmbb333	chr1:116935420-116935692(+)$1	272	211	228	7.8084
!eeeeeooooooeeeee	chrX:132887833-132888119(-)$1	286	200	217	5.7621
b[ddddoooooodddd]	chr1:8926451-8926661(-)$1	210	119	136	5.9387
"""cccooooooccccc	chr2:216286789-216287023(-)$1	234	194	211	6.6139
[ddddcccmmmmccc22	chr2:216248061-216248305(-)$1	244	29	46	7.0135
ccc[bb[ammmma333b	chr3:58109044-58109295(+)$1	251	163	180	7.1813
[eeeeebbmmmmbb]ee	chr8:27457234-27457491(-)$1	257	25	42	8.0969
[gggggggmmmmggggg	chr2:216246836-216247078(-)$1	242	191	208	7.2050
===ccc[ammmma]ccc	chr3:186335001-186335234(+)$1	233	167	184	7.8499
gggggggoooooogggg	chr6:31903634-31903888(+)$1	254	213	230	5.6897
e!!ddddoooooodddd	chr1:230845951-230846193(-)$1	242	87	104	6.1852
"""eeeeemmmmeeeee	chr8:11704493-11704767(-)$1	274	25	42	7.1560
ee!!ddddmmmmdddd2	chrX:132887573-132887818(-)$1	245	76	93	7.2387
ffffffbbmmmmbb333	chr2:216259198-216259416(-)$1	218	52	69	7.1682
ddd[bboooooobb]dd	chr9:124083444-124083695(+)$1	251	40	57	6.2401
===ccc[ammmma]ccc	chr3:186335034-186335239(+)$1	205	134	151	7.8499

#otherMatches

#Seq PSSM
GGUUGCAGUGACCUGCA	chr3:186337561-186337798(+)$1	237	134	151	6.4245
CAAGGAUCUUAUGACCU	chr1:230839973-230840183(-)$1	210	134	151	6.9779
CUGGCCGUGGAGACAGC	chr2:216248653-216248935(-)$1	282	136	153	8.5375
CAAGGAUCUUAUGACCU	chr1:230839951-230840164(-)$1	213	115	132	6.9779
GCUUUGGGAGGGCUCAU	chr7:45930047-45930262(+)$1	215	57	74	6.9094
CCGAGGUCCCGCGGCCG	chr17:37856401-37856662(+)$1	261	223	240	6.9813
GGGAUGAGAAAGUUUAU	chr17:64224115-64224331(-)$1	216	130	147	7.2187
GUACCGGGGAGACCAGG	chr19:6682128-6682336(-)$1	208	96	113	6.9741
GAGCAUUUUCAUGUACU	chr3:186336268-186336485(+)$1	217	31	48	6.2401
GACCGCUCAGACGAGGC	chr11:68201145-68201387(+)$1	242	133	150	8.1275
GCCGGGCCACGAGGACU	chr11:63676497-63676724(+)$1	227	61	78	8.5566
ACAGUCUCCUGGGAGAG	chr2:216261766-216262039(-)$1	273	149	166	7.6673
CUGGGGACAGCGGUGCC	chr2:216300278-216300524(-)$1	246	47	64	8.6324
CACAAGCUUUUGAGUUU	chrX:132888084-132888297(-)$1	213	172	189	7.3198
CAUGGGCCCCAUUCCAG	chr2:216236535-216236781(-)$1	246	73	90	6.5170
AGUGGAGCGCCUGUUCC	chr6:132271149-132271384(-)$1	235	156	173	6.2976
GAGCAAGCCUCUGACUG	chr2:216270921-216271162(-)$1	241	170	187	7.1539
GGUGGAGGAGAUCCUCA	chr1:955514-955786(+)$1	272	187	204	7.3251
CUCACUGGAUAUCGAGU	chr2:216243911-216244140(-)$1	229	183	200	7.5610
UGUCAGUGUUUACACUG	chr2:216259216-216259450(-)$1	234	135	152	6.2730
AGAAACUCAGAAGACUU	chr2:216251327-216251623(-)$1	296	232	249	7.2282
GCAGCUGGAUGACUACC	chr9:124065095-124065404(+)$1	309	142	159	7.2887
UGGGCCCCCGCUGGAGG	chr19:49993123-49993366(+)$1	243	85	102	8.3254
GAGCAUUUUCAUGUACU	chr3:186336248-186336468(+)$1	220	51	68	6.2842
CGGAGGGCGAGGGCAAG	chr1:116935420-116935692(+)$1	272	211	228	7.8084
UUUGGGAAUUUCCCCAA	chrX:132887833-132888119(-)$1	286	200	217	5.7621
GGCGGUUCUCAUGCUGG	chr1:8926451-8926661(-)$1	210	119	136	5.9387
UACUCGCAGCUUCGAGG	chr2:216286789-216287023(-)$1	234	194	211	6.6139
GAGGAGGACUUGUCCAA	chr2:216248061-216248305(-)$1	244	29	46	7.0135
CGGACUCGGGAACAAAA	chr3:58109044-58109295(+)$1	251	163	180	7.1813
AGGUCGCUGAGAGGUUG	chr8:27457234-27457491(-)$1	257	25	42	8.0969
UUGGGUGUCUGAAUGCC	chr2:216246836-216247078(-)$1	242	191	208	7.2050
GGCAGUUCGGUGGCACU	chr3:186335001-186335234(+)$1	233	167	184	7.8499
UCAUCACGUGAUGGUGA	chr6:31903634-31903888(+)$1	254	213	230	5.6897
UUCCUUGGAAGGACAAG	chr1:230845951-230846193(-)$1	242	87	104	6.1852
GACCGUGGCGUGCCACG	chr8:11704493-11704767(-)$1	274	25	42	7.1560
GGACUGAUGAUGGUUAA	chrX:132887573-132887818(-)$1	245	76	93	7.2387
AUCAGAGCUCCUGCACU	chr2:216259198-216259416(-)$1	218	52	69	7.1682
CUUGCCUGAGCUGGGGG	chr9:124083444-124083695(+)$1	251	40	57	6.2401
GGCAGUUCGGUGGCACU	chr3:186335034-186335239(+)$1	205	134	151	7.8499

#DB
...(((((....)))))	chr3:186337561-186337798(+)$1	1	134	151	6.4245
((.((.((....)))))	chr1:230839973-230840183(-)$1	1	134	151	6.9779
..(((.((....)).))	chr2:216248653-216248935(-)$1	1	136	153	8.5375
((.((.((....)))))	chr1:230839951-230840164(-)$1	1	115	132	6.9779
.((.((((....)))).	chr7:45930047-45930262(+)$1	1	57	74	6.9094
((..((((....)))))	chr17:37856401-37856662(+)$1	1	223	240	6.9813
.(((((((....)))))	chr17:64224115-64224331(-)$1	1	130	147	7.2187
(((((.((....)).))	chr19:6682128-6682336(-)$1	1	96	113	6.9741
(((.((......)).))	chr3:186336268-186336485(+)$1	1	31	48	6.2401
(.((((((....)).))	chr11:68201145-68201387(+)$1	1	133	150	8.1275
(..(((((....)).))	chr11:63676497-63676724(+)$1	1	61	78	8.5566
.(..((((....)))))	chr2:216261766-216262039(-)$1	1	149	166	7.6673
..(((.((....)).))	chr2:216300278-216300524(-)$1	1	47	64	8.6324
((((((((....)))))	chrX:132888084-132888297(-)$1	1	172	189	7.3198
..((((......)))))	chr2:216236535-216236781(-)$1	1	73	90	6.5170
..((((((....)))))	chr6:132271149-132271384(-)$1	1	156	173	6.2976
(((((..(....)..))	chr2:216270921-216271162(-)$1	1	170	187	7.1539
(...((((....)))).	chr1:955514-955786(+)$1	1	187	204	7.3251
))((((.(....).)))	chr2:216243911-216244140(-)$1	1	183	200	7.5610
((.(((((....)))))	chr2:216259216-216259450(-)$1	1	135	152	6.2730
.((((.((....)).))	chr2:216251327-216251623(-)$1	1	232	249	7.2282
.(((.(((....))).)	chr9:124065095-124065404(+)$1	1	142	159	7.2887
(.((((((....)).))	chr19:49993123-49993366(+)$1	1	85	102	8.3254
(((.((......)).))	chr3:186336248-186336468(+)$1	1	51	68	6.2842
(((...((....))...	chr1:116935420-116935692(+)$1	1	211	228	7.8084
.(((((......)))))	chrX:132887833-132888119(-)$1	1	200	217	5.7621
(.((((......)))).	chr1:8926451-8926661(-)$1	1	119	136	5.9387
...(((......)))))	chr2:216286789-216287023(-)$1	1	194	211	6.6139
.(((((((....)))..	chr2:216248061-216248305(-)$1	1	29	46	7.0135
(((.((.(....)...)	chr3:58109044-58109295(+)$1	1	163	180	7.1813
.(((((((....)).))	chr8:27457234-27457491(-)$1	1	25	42	8.0969
.(((((((....)))))	chr2:216246836-216247078(-)$1	1	191	208	7.2050
)))(((.(....).)))	chr3:186335001-186335234(+)$1	1	167	184	7.8499
(((((((......))))	chr6:31903634-31903888(+)$1	1	213	230	5.6897
(..((((......))))	chr1:230845951-230846193(-)$1	1	87	104	6.1852
...(((((....)))))	chr8:11704493-11704767(-)$1	1	25	42	7.1560
((..((((....)))).	chrX:132887573-132887818(-)$1	1	76	93	7.2387
((((((((....))...	chr2:216259198-216259416(-)$1	1	52	69	7.1682
(((.((......)).))	chr9:124083444-124083695(+)$1	1	40	57	6.2401
)))(((.(....).)))	chr3:186335034-186335239(+)$1	1	134	151	7.8499

#PSSM
e : 0.19	[ : 0.15	! : 0.10	c : 0.10	d : 0.07	b : 0.07	" : 0.07	= : 0.05	$ : 0.02	# : 0.02	h : 0.02	i : 0.02	: : 0.02	g : 0.02	f : 0.02	
e : 0.17	d : 0.12	! : 0.10	" : 0.10	c : 0.10	g : 0.07	[ : 0.07	b : 0.05	= : 0.05	$ : 0.02	# : 0.02	h : 0.02	a : 0.02	i : 0.02	f : 0.02	
d : 0.24	c : 0.12	! : 0.12	e : 0.10	[ : 0.07	g : 0.07	" : 0.07	f : 0.05	= : 0.05	$ : 0.02	b : 0.02	i : 0.02	
d : 0.19	c : 0.17	e : 0.15	[ : 0.12	b : 0.07	! : 0.07	g : 0.07	f : 0.05	" : 0.05	i : 0.02	
d : 0.32	b : 0.17	e : 0.15	c : 0.15	g : 0.07	f : 0.05	i : 0.02	[ : 0.02	" : 0.02	
d : 0.27	[ : 0.15	c : 0.15	e : 0.12	b : 0.10	g : 0.07	f : 0.05	i : 0.02	! : 0.02	" : 0.02	
b : 0.30	o : 0.17	d : 0.15	[ : 0.10	e : 0.07	g : 0.07	c : 0.05	i : 0.02	f : 0.02	! : 0.02	
b : 0.30	o : 0.22	d : 0.12	a : 0.12	e : 0.07	g : 0.05	c : 0.05	i : 0.02	f : 0.02	
m : 0.77	o : 0.22	
m : 0.77	o : 0.22	
m : 0.77	o : 0.22	
m : 0.77	o : 0.22	
b : 0.37	d : 0.17	a : 0.12	e : 0.10	c : 0.07	g : 0.05	o : 0.05	i : 0.02	f : 0.02	
b : 0.37	d : 0.19	e : 0.10	g : 0.07	] : 0.07	c : 0.07	i : 0.02	f : 0.02	2 : 0.02	3 : 0.02	
] : 0.27	d : 0.22	c : 0.12	e : 0.10	g : 0.07	3 : 0.07	b : 0.05	i : 0.02	f : 0.02	2 : 0.02	
d : 0.35	e : 0.17	c : 0.15	b : 0.07	g : 0.07	3 : 0.07	i : 0.02	f : 0.02	] : 0.02	2 : 0.02	
e : 0.22	c : 0.19	d : 0.17	g : 0.07	2 : 0.07	] : 0.05	b : 0.05	3 : 0.05	h : 0.02	a : 0.02	i : 0.02	f : 0.02	

#score	284.7987664978001
#seq	40
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_transcript_m1_run1.txt

#BEAR
===========[bbnnnnnbb]===========	chr12:6619426-6619635(+)$1	209	143	176	19.6877
dd!!iiiiiiiiiooooooiiiiiiiii22ddd	chr20:2637532-2637756(+)$1	224	176	209	13.7845
[iiiiiiiii"""bbmmmmbb]iiiiiiiii22	chr2:234197358-234197623(+)$1	265	38	71	15.0416
===========[bbnnnnnbb]===========	chr12:6619401-6619617(+)$1	216	168	201	19.6877
cc####a[ffffffnnnnnffffff]a333ccc	chr11:93454810-93455024(+)$1	214	2	35	13.0017
[ccc####ccc[bboooooobb]ccc22ccc]b	chr1:173833432-173833649(-)$1	217	85	118	12.3911
gggg"""iiiiiiiiillliiiiiiiii]gggg	chr7:98479282-98479498(+)$1	216	12	45	15.8152
=====!!dddd[bb[a[ccc[============	chr1:109642831-109643036(+)$1	205	69	102	13.4839
==========[cccooooooccc]=========	chr1:76252687-76252924(+)$1	237	5	38	17.2290
B:==========[bbmmmmbb]==========:	chr4:1976343-1976589(+)$1	246	94	127	13.5361
iiiiiiiii[ddddmmmmdddd333iiiiiiii	chr10:101996713-101996964(-)$1	251	166	199	12.6455
b[==========[bbmmmmbb]==========]	chr1:109642788-109642995(+)$1	207	59	92	16.6362
iiii####eeeee[bblllbb]eeeeeiiiiii	chr1:46774971-46775234(+)$1	263	49	82	13.0935
==========[cccooooooccc]=========	chr1:76252682-76252887(+)$1	205	10	43	17.2290
[iiiiiiiii"""bbmmmmbb]iiiiiiiii22	chr2:234197325-234197558(+)$1	233	71	104	15.0416
eee####gggggggnnnnnggggggg22eeeee	chr11:65270999-65271229(+)$1	230	67	100	13.3440
===========[ccclllccc333=========	chr11:75111338-75111683(+)$1	345	56	89	17.3255
===========[bbnnnnnbb]===========	chr12:6619449-6619679(+)$1	230	120	153	19.6877
=====!!dddd[bb[a[ccc[============	chr1:109642891-109643093(+)$1	202	9	42	13.4839
===========[bbnnnnnbb]===========	chr12:6619435-6619649(+)$1	214	134	167	19.6877
=========vvvvvvvvvvvvv===========	chr2:234197462-234197672(+)$1	210	119	152	12.1594
c[ffffff[a[cccnnnnncccaffffffccc]	chr8:67834613-67834870(-)$1	257	170	203	11.0015
ggg####dddd[bboooooobbdddd22ggggg	chr1:173835915-173836177(-)$1	262	4	37	12.3469
fff####eeeee[annnnnaeeeee4444ffff	chr2:234184452-234184656(+)$1	204	128	161	12.7880
$$$$$==========lll==========eeeee	chr11:10822915-10823168(-)$1	253	41	74	14.5286
c:iiiiiiiii[bboooooobbiiiiiiiii::	chr7:45144336-45144588(-)$1	252	31	64	12.9221
dd[eeeee####bbnnnnnbb4444eeeee]dd	chr3:169482655-169482897(-)$1	242	139	172	11.1976
ggggggiiiiiiiiimmmmiiiiiiiii333gg	chr5:137896654-137896874(-)$1	220	178	211	14.3569
fff####gggggggnnnnngggggggffffffb	chr17:16344437-16344713(+)$1	276	211	244	13.2072
===========[bbnnnnnbb]===========	chr12:6619479-6619698(+)$1	219	90	123	19.6877
h[bb[iiiiiiiiinnnnniiiiiiiii]bbhh	chr17:74554808-74555037(+)$1	229	22	55	14.6208
iiiiiiiii"""cccooooooccciiiiiiiii	chr10:70514835-70515097(+)$1	262	48	81	15.0957
iiiiiiiii!!eeeeellleeeeeiiiiiiiii	chr12:7076442-7076656(-)$1	214	11	44	14.2106
eeeee"""ffffffnnnnnffffff333eeeee	chr12:7076497-7076702(-)$1	205	2	35	11.5059
cc!!ggggggg[cccmmmmcccggggggg22cc	chr1:173835020-173835259(-)$1	239	142	175	11.8119
fff####eeeee[annnnnaeeeee4444ffff	chr2:234184489-234184709(+)$1	220	91	124	12.7880
iiiiiiiii!!eeeeellleeeeeiiiiiiiii	chr12:7076491-7076697(-)$1	206	52	85	14.2106
gggggggggg[cccnnnnnccc22gggggggFF	chrX:135961282-135961538(-)$1	256	86	119	12.8790
gggg==========oooooo==========333	chr10:101996795-101997042(-)$1	247	156	189	17.3380
=========[ddddllldddd22==========	chr17:7480117-7480358(+)$1	241	65	98	14.3393
b[==========[bbmmmmbb]==========]	chr1:109642781-109642988(+)$1	207	66	99	16.6362
eee"""eeeee[bbnnnnnbb22eeeeeeeeee	chr2:234184373-234184599(+)$1	226	19	52	12.2218
===========[bbnnnnnbb]===========	chr12:6619517-6619763(+)$1	246	52	85	19.6877
iiiiiiiii!!eeeeellleeeeeiiiiiiiii	chr12:7076478-7076691(-)$1	213	46	79	14.2106
fff===========nnnnn===========:::	chr11:18425140-18425430(+)$1	290	206	239	14.5511
###===========nnnnn===========22b	chr11:18425230-18425459(+)$1	229	116	149	17.4497
gggg"""iiiiiiiiillliiiiiiiii]gggg	chr7:98479271-98479482(+)$1	211	23	56	15.8152
fff####eeeee[annnnnaeeeee4444ffff	chr2:234184437-234184652(+)$1	215	143	176	12.7880
cc####a[ffffffnnnnnffffff]a333ccc	chr11:93454806-93455010(+)$1	204	6	39	13.0017
=====!!dddd[bb[a[ccc[============	chr1:109642871-109643075(+)$1	204	29	62	13.4839
==========fffffflllffffff22======	chr17:27049500-27049727(+)$1	227	64	97	14.0881

#otherMatches

#Seq PSSM
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGA	chr12:6619426-6619635(+)$1	209	143	176	19.6877
GCACUUUUCUUUGACCAGGCAGAGGAAGCGGCU	chr20:2637532-2637756(+)$1	224	176	209	13.7845
CUCCAUCGCACUUCAGAAGUGCUGCGAUGGGCA	chr2:234197358-234197623(+)$1	265	38	71	15.0416
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGA	chr12:6619401-6619617(+)$1	216	168	201	19.6877
CAAUAAGGGCAUAUGUCUGgugugugugugugu	chr11:93454810-93455024(+)$1	214	2	35	13.0017
CUGCCAAAUGAAAUAUAAUGAUAUCACUGUAAA	chr1:173833432-173833649(-)$1	217	85	118	12.3911
UUUUCCUUUUCUCUACCUUGUAGAGAAGCAAAG	chr7:98479282-98479498(+)$1	216	12	45	15.8152
AGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUU	chr1:109642831-109643036(+)$1	205	69	102	13.4839
UUAUUUUUUACUUAUCUUUUUGAAUGAAAAGUG	chr1:76252687-76252924(+)$1	237	5	38	17.2290
GGGGUGUCCUGUCUCAGUGGACACAGGACACCA	chr4:1976343-1976589(+)$1	246	94	127	13.5361
UCUCAGAGACUGUGCAGGCACAACUUCUCUGGG	chr10:101996713-101996964(-)$1	251	166	199	12.6455
UGUUGUGUGCGGAGCUGUGGCGUCGCGUGUGAG	chr1:109642788-109642995(+)$1	207	59	92	16.6362
AUGGCAUCUUGAGGGCCUGGCACUCAAUCAUCU	chr1:46774971-46775234(+)$1	263	49	82	13.0935
UUAUUUUUUACUUAUCUUUUUGAAUGAAAAGUG	chr1:76252682-76252887(+)$1	205	10	43	17.2290
CUCCAUCGCACUUCAGAAGUGCUGCGAUGGGCA	chr2:234197325-234197558(+)$1	233	71	104	15.0416
UUCAAAAUAAUAAACUAUUUUUAUUAGAGAAUG	chr11:65270999-65271229(+)$1	230	67	100	13.3440
AGAGCAGUUUCUUGUUUUGCAUGUGGAACUGUU	chr11:75111338-75111683(+)$1	345	56	89	17.3255
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGA	chr12:6619449-6619679(+)$1	230	120	153	19.6877
AGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUU	chr1:109642891-109643093(+)$1	202	9	42	13.4839
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGA	chr12:6619435-6619649(+)$1	214	134	167	19.6877
AGACCUCUGAUUGAAAAUCCCCCAGGGGUUUUA	chr2:234197462-234197672(+)$1	210	119	152	12.1594
CUGUACAUUGAUUAAUUACUGACAUGUAUGUAA	chr8:67834613-67834870(-)$1	257	170	203	11.0015
CUGGGUGCAGAUGCAGUGUGGCUCUGGAUAGCA	chr1:173835915-173836177(-)$1	262	4	37	12.3469
CACAGGAGACUGACGAGUGGCAGUCAUGGGUGU	chr2:234184452-234184656(+)$1	204	128	161	12.7880
AUUAAGAGGACUUUAUGCUGGAGUUCUUGACGU	chr11:10822915-10823168(-)$1	253	41	74	14.5286
GGCCCUGGGUCACCUACCCUGGGACCUGGGGAU	chr7:45144336-45144588(-)$1	252	31	64	12.9221
GCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGC	chr3:169482655-169482897(-)$1	242	139	172	11.1976
AAUAGGAUUAUCUUGGACCUAAGAUAGUGACCU	chr5:137896654-137896874(-)$1	220	178	211	14.3569
AGAAAGUGAGAUUGAAAUGUAGUUUCUUUGCAG	chr17:16344437-16344713(+)$1	276	211	244	13.2072
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGA	chr12:6619479-6619698(+)$1	219	90	123	19.6877
AUGAAUUUUGGAUCGCUAGGAUUUAGGAAUCUU	chr17:74554808-74555037(+)$1	229	22	55	14.6208
UGUUUCUUUAAAAGAACUCUAUCUGAAGAAAUA	chr10:70514835-70515097(+)$1	262	48	81	15.0957
GUAAGGCCAGAUCAAUAGCAUUGGUGGCCUUGC	chr12:7076442-7076656(-)$1	214	11	44	14.2106
ACUACAGAUGAGAUCUGAAAUCUUAGUGGUAGU	chr12:7076497-7076702(-)$1	205	2	35	11.5059
CUCUAACUGACUAAAGGCAUUUGUUAGUUUUGG	chr1:173835020-173835259(-)$1	239	142	175	11.8119
CACAGGAGACUGACGAGUGGCAGUCAUGGGUGU	chr2:234184489-234184709(+)$1	220	91	124	12.7880
GUAAGGCCAGAUCAAUAGCAUUGGUGGCCUUGC	chr12:7076491-7076697(-)$1	206	52	85	14.2106
GGCUAUUAUAAUUAAAAUAUAAGCUAUGAUGAA	chrX:135961282-135961538(-)$1	256	86	119	12.8790
CUUACAGACAGGCUGACACAGGCUUGUCUGGCC	chr10:101996795-101997042(-)$1	247	156	189	17.3380
CAGCCCUGGCAGUGUCCUACUUCCCAGGGCUGU	chr17:7480117-7480358(+)$1	241	65	98	14.3393
UGUUGUGUGCGGAGCUGUGGCGUCGCGUGUGAG	chr1:109642781-109642988(+)$1	207	66	99	16.6362
AGGUCUGAUUGCACUGAAUGUCACGGUCCCUUU	chr2:234184373-234184599(+)$1	226	19	52	12.2218
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGA	chr12:6619517-6619763(+)$1	246	52	85	19.6877
GUAAGGCCAGAUCAAUAGCAUUGGUGGCCUUGC	chr12:7076478-7076691(-)$1	213	46	79	14.2106
GGUGGUUGAGAGGUAAUAAAUCUUUCAAUUUGG	chr11:18425140-18425430(+)$1	290	206	239	14.5511
GGUGGUUGAGAGGUAAUAAAUCUUUCAAUUUGG	chr11:18425230-18425459(+)$1	229	116	149	17.4497
UUUUCCUUUUCUCUACCUUGUAGAGAAGCAAAG	chr7:98479271-98479482(+)$1	211	23	56	15.8152
CACAGGAGACUGACGAGUGGCAGUCAUGGGUGU	chr2:234184437-234184652(+)$1	215	143	176	12.7880
CAAUAAGGGCAUAUGUCUGgugugugugugugu	chr11:93454806-93455010(+)$1	204	6	39	13.0017
AGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUU	chr1:109642871-109643075(+)$1	204	29	62	13.4839
CCCUGGGAUUGGGGCUUCAGGCCCUUAGAUUUC	chr17:27049500-27049727(+)$1	227	64	97	14.0881

#DB
(((((((((((.((.....)).)))))))))))	chr12:6619426-6619635(+)$1	1	143	176	19.6877
((..(((((((((......)))))))))..)))	chr20:2637532-2637756(+)$1	1	176	209	13.7845
.(((((((((...((....)).)))))))))..	chr2:234197358-234197623(+)$1	1	38	71	15.0416
(((((((((((.((.....)).)))))))))))	chr12:6619401-6619617(+)$1	1	168	201	19.6877
((....(.((((((.....)))))).)...)))	chr11:93454810-93455024(+)$1	1	2	35	13.0017
.(((....(((.((......)).)))..))).)	chr1:173833432-173833649(-)$1	1	85	118	12.3911
((((...(((((((((...))))))))).))))	chr7:98479282-98479498(+)$1	1	12	45	15.8152
(((((..((((.((.(.(((.((((((((((((	chr1:109642831-109643036(+)$1	1	69	102	13.4839
((((((((((.(((......))).)))))))))	chr1:76252687-76252924(+)$1	1	5	38	17.2290
(.((((((((((.((....)).)))))))))).	chr4:1976343-1976589(+)$1	1	94	127	13.5361
(((((((((.((((....))))...))))))))	chr10:101996713-101996964(-)$1	1	166	199	12.6455
(.((((((((((.((....)).)))))))))).	chr1:109642788-109642995(+)$1	1	59	92	16.6362
((((....(((((.((...)).)))))))))))	chr1:46774971-46775234(+)$1	1	49	82	13.0935
((((((((((.(((......))).)))))))))	chr1:76252682-76252887(+)$1	1	10	43	17.2290
.(((((((((...((....)).)))))))))..	chr2:234197325-234197558(+)$1	1	71	104	15.0416
(((....(((((((.....)))))))..)))))	chr11:65270999-65271229(+)$1	1	67	100	13.3440
(((((((((((.(((...)))...)))))))))	chr11:75111338-75111683(+)$1	1	56	89	17.3255
(((((((((((.((.....)).)))))))))))	chr12:6619449-6619679(+)$1	1	120	153	19.6877
(((((..((((.((.(.(((.((((((((((((	chr1:109642891-109643093(+)$1	1	9	42	13.4839
(((((((((((.((.....)).)))))))))))	chr12:6619435-6619649(+)$1	1	134	167	19.6877
(((((((((.............)))))))))))	chr2:234197462-234197672(+)$1	1	119	152	12.1594
(.((((((.(.(((.....))))))))))))).	chr8:67834613-67834870(-)$1	1	170	203	11.0015
(((....((((.((......))))))..)))))	chr1:173835915-173836177(-)$1	1	4	37	12.3469
(((....(((((.(.....))))))....))))	chr2:234184452-234184656(+)$1	1	128	161	12.7880
.....((((((((((...)))))))))))))))	chr11:10822915-10823168(-)$1	1	41	74	14.5286
).(((((((((.((......)))))))))))..	chr7:45144336-45144588(-)$1	1	31	64	12.9221
((.(((((....((.....))....))))).))	chr3:169482655-169482897(-)$1	1	139	172	11.1976
(((((((((((((((....)))))))))...))	chr5:137896654-137896874(-)$1	1	178	211	14.3569
(((....(((((((.....)))))))))))))(	chr17:16344437-16344713(+)$1	1	211	244	13.2072
(((((((((((.((.....)).)))))))))))	chr12:6619479-6619698(+)$1	1	90	123	19.6877
(.((.(((((((((.....))))))))).))))	chr17:74554808-74555037(+)$1	1	22	55	14.6208
(((((((((...(((......))))))))))))	chr10:70514835-70515097(+)$1	1	48	81	15.0957
(((((((((..(((((...))))))))))))))	chr12:7076442-7076656(-)$1	1	11	44	14.2106
(((((...((((((.....))))))...)))))	chr12:7076497-7076702(-)$1	1	2	35	11.5059
((..(((((((.(((....))))))))))..))	chr1:173835020-173835259(-)$1	1	142	175	11.8119
(((....(((((.(.....))))))....))))	chr2:234184489-234184709(+)$1	1	91	124	12.7880
(((((((((..(((((...))))))))))))))	chr12:7076491-7076697(-)$1	1	52	85	14.2106
)))(((((((.(((.....)))..)))))))))	chrX:135961282-135961538(-)$1	1	86	119	12.8790
((((((((((((((......))))))))))...	chr10:101996795-101997042(-)$1	1	156	189	17.3380
(((((((((.((((...))))..))))))))))	chr17:7480117-7480358(+)$1	1	65	98	14.3393
(.((((((((((.((....)).)))))))))).	chr1:109642781-109642988(+)$1	1	66	99	16.6362
(((...(((((.((.....))..))))))))))	chr2:234184373-234184599(+)$1	1	19	52	12.2218
(((((((((((.((.....)).)))))))))))	chr12:6619517-6619763(+)$1	1	52	85	19.6877
(((((((((..(((((...))))))))))))))	chr12:7076478-7076691(-)$1	1	46	79	14.2106
)))(((((((((((.....)))))))))))...	chr11:18425140-18425430(+)$1	1	206	239	14.5511
...(((((((((((.....)))))))))))..)	chr11:18425230-18425459(+)$1	1	116	149	17.4497
((((...(((((((((...))))))))).))))	chr7:98479271-98479482(+)$1	1	23	56	15.8152
(((....(((((.(.....))))))....))))	chr2:234184437-234184652(+)$1	1	143	176	12.7880
((....(.((((((.....)))))).)...)))	chr11:93454806-93455010(+)$1	1	6	39	13.0017
(((((..((((.((.(.(((.((((((((((((	chr1:109642871-109643075(+)$1	1	29	62	13.4839
((((((((((((((((...))))))..))))))	chr17:27049500-27049727(+)$1	1	64	97	14.0881

#PSSM
= : 0.29	g : 0.11	i : 0.11	c : 0.09	f : 0.09	[ : 0.05	e : 0.05	d : 0.03	b : 0.03	B : 0.01	$ : 0.01	h : 0.01	# : 0.01	
= : 0.29	i : 0.15	g : 0.11	f : 0.09	c : 0.07	[ : 0.07	e : 0.05	d : 0.03	: : 0.03	$ : 0.01	# : 0.01	
= : 0.35	i : 0.17	g : 0.11	f : 0.11	# : 0.05	e : 0.05	! : 0.03	c : 0.01	$ : 0.01	[ : 0.01	b : 0.01	
= : 0.39	i : 0.17	# : 0.15	g : 0.09	! : 0.03	e : 0.03	c : 0.01	f : 0.01	$ : 0.01	b : 0.01	" : 0.01	
= : 0.41	# : 0.19	i : 0.17	" : 0.05	g : 0.05	e : 0.03	f : 0.01	$ : 0.01	[ : 0.01	
= : 0.37	i : 0.19	# : 0.19	" : 0.07	! : 0.05	g : 0.05	f : 0.01	e : 0.01	
= : 0.37	i : 0.21	# : 0.15	" : 0.05	! : 0.05	a : 0.03	e : 0.03	g : 0.03	f : 0.01	
= : 0.37	i : 0.25	e : 0.09	d : 0.07	g : 0.07	[ : 0.03	# : 0.03	f : 0.01	" : 0.01	
= : 0.37	i : 0.25	e : 0.09	d : 0.07	g : 0.07	f : 0.05	c : 0.01	[ : 0.01	# : 0.01	
= : 0.33	i : 0.15	e : 0.09	d : 0.07	g : 0.07	f : 0.05	! : 0.05	[ : 0.03	c : 0.01	v : 0.01	a : 0.01	# : 0.01	" : 0.01	
= : 0.27	i : 0.11	d : 0.11	e : 0.09	f : 0.07	[ : 0.07	" : 0.05	g : 0.05	! : 0.05	c : 0.01	v : 0.01	# : 0.01	
[ : 0.29	= : 0.13	e : 0.13	i : 0.09	f : 0.07	c : 0.07	" : 0.05	d : 0.03	g : 0.03	v : 0.01	# : 0.01	
b : 0.27	c : 0.13	[ : 0.11	i : 0.09	f : 0.07	e : 0.07	= : 0.07	" : 0.03	d : 0.03	g : 0.03	v : 0.01	
b : 0.37	c : 0.13	f : 0.07	i : 0.07	= : 0.07	a : 0.05	e : 0.05	d : 0.03	g : 0.03	o : 0.01	[ : 0.01	v : 0.01	
n : 0.41	o : 0.13	b : 0.11	i : 0.05	[ : 0.05	c : 0.05	e : 0.05	m : 0.01	v : 0.01	= : 0.01	l : 0.01	f : 0.01	
n : 0.41	o : 0.15	m : 0.15	a : 0.05	l : 0.05	e : 0.05	i : 0.03	b : 0.01	v : 0.01	f : 0.01	
n : 0.41	l : 0.19	o : 0.15	m : 0.15	[ : 0.05	v : 0.01	
n : 0.41	l : 0.17	o : 0.15	m : 0.15	c : 0.05	v : 0.01	d : 0.01	
n : 0.41	o : 0.15	m : 0.13	l : 0.13	c : 0.07	d : 0.03	v : 0.01	= : 0.01	
b : 0.27	o : 0.13	c : 0.13	i : 0.09	f : 0.07	a : 0.05	= : 0.05	e : 0.05	d : 0.03	g : 0.03	v : 0.01	
b : 0.33	c : 0.11	e : 0.11	i : 0.09	f : 0.07	= : 0.07	[ : 0.05	d : 0.03	g : 0.03	v : 0.01	o : 0.01	
] : 0.23	= : 0.13	c : 0.11	e : 0.11	i : 0.09	f : 0.07	b : 0.05	g : 0.03	2 : 0.03	d : 0.01	3 : 0.01	v : 0.01	4 : 0.01	
= : 0.33	i : 0.15	e : 0.13	f : 0.07	c : 0.05	g : 0.05	2 : 0.05	3 : 0.03	] : 0.01	a : 0.01	d : 0.01	4 : 0.01	
= : 0.35	i : 0.15	e : 0.15	f : 0.09	g : 0.05	c : 0.03	] : 0.03	3 : 0.03	d : 0.01	4 : 0.01	2 : 0.01	
= : 0.41	i : 0.23	f : 0.09	e : 0.09	g : 0.07	c : 0.01	3 : 0.01	d : 0.01	4 : 0.01	
= : 0.41	i : 0.25	g : 0.07	e : 0.05	4 : 0.05	] : 0.03	c : 0.01	f : 0.01	d : 0.01	3 : 0.01	2 : 0.01	
= : 0.41	i : 0.25	2 : 0.07	e : 0.05	4 : 0.05	a : 0.03	f : 0.03	g : 0.03	3 : 0.01	
= : 0.43	i : 0.27	3 : 0.05	2 : 0.05	4 : 0.05	f : 0.03	e : 0.03	g : 0.03	
= : 0.41	i : 0.17	e : 0.09	3 : 0.05	] : 0.05	g : 0.05	4 : 0.05	f : 0.03	2 : 0.01	c : 0.01	
= : 0.41	i : 0.17	e : 0.09	g : 0.07	f : 0.07	3 : 0.05	2 : 0.03	c : 0.03	b : 0.01	
= : 0.35	i : 0.17	c : 0.07	g : 0.07	e : 0.07	f : 0.07	3 : 0.03	2 : 0.03	d : 0.01	] : 0.01	b : 0.01	: : 0.01	
= : 0.35	i : 0.11	c : 0.07	g : 0.07	e : 0.07	f : 0.07	2 : 0.05	d : 0.03	: : 0.03	] : 0.01	h : 0.01	F : 0.01	3 : 0.01	
= : 0.29	i : 0.11	g : 0.07	e : 0.07	c : 0.05	b : 0.05	: : 0.05	] : 0.05	f : 0.05	d : 0.03	2 : 0.03	h : 0.01	F : 0.01	3 : 0.01	

#score	748.7652476083217
#seq	51
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_UTR_m1_run2.txt

#BEAR
ccc[dddd[ddddnnnnndddd]dddd]ccc	chr4:166300240-166300549(+)$1	309	141	172	10.2312
!!ccc[bb[ddddnnnnndddd]bbccc333	chr9:116823733-116823969(-)$1	236	54	85	10.8323
iii:==========mmmm==========ggg	chr16:3767355-3767612(-)$1	257	138	169	8.7470
c!!ccc"""cccoooooocccccc22ccc22	chr2:220435942-220436229(-)$1	287	57	88	11.0699
cc[bbbb[ccc[bblllbbcccbb]bb]ccc	chr17:79803720-79803966(-)$1	246	39	70	8.4333
ee"""ccc[eeeeemmmmeeeee]ccc]eee	chr4:1809190-1809416(+)$1	226	26	57	7.7839
bb[dddd!!ddddnnnnnddddddddbba]d	chr9:117005724-117005941(+)$1	217	50	81	9.3708
c[adddd[bbcccnnnnnccc]bbdddd]a]	chr11:1774751-1774973(-)$1	222	84	115	10.3167
neeeeebbbbcccnnnnnccc]bbccc[bb[	chr17:76969076-76969292(-)$1	216	64	95	9.3604
ccddddgggggggnnnnnggggggg]dddd3	chr6:167369764-167370029(-)$1	265	75	106	9.3087
fffbb[ccc[bbammmma]bb]ccc]bb]ff	chr17:79813007-79813226(-)$1	219	136	167	8.4562
h[ccc$$$$$cccnnnnnccc4444ccchhh	chr17:26697113-26697386(-)$1	273	75	106	12.1553
ff[bb[ccc!!bboooooobb22cccbbfff	chr9:116999166-116999409(+)$1	243	132	163	10.2508
cc]bbdddd[cccoooooocccdddd:dddd	chr9:116840348-116840591(-)$1	243	60	91	8.2226
Eggggggg!!cccnnnnnccc22ggggggg:	chr8:57906013-57906363(-)$1	350	318	349	10.1647
eeeee####eeeeellleeeee22eeeee]c	chr6:119670186-119670424(-)$1	238	41	72	8.9658
"""eeeee!!cccnnnnnccc]eeeee4444	chr17:79804207-79804428(-)$1	221	14	45	10.9175
[ccc"""ffffffnnnnnffffffccc]a]c	chr9:117052428-117052708(+)$1	280	76	107	9.9685
iiiiiii"""cccmmmmccc4444iiiiiii	chr17:76968289-76968551(-)$1	262	148	179	10.9058
eeeee!!bb[cccmmmmccc]bb22eeeee]	chr7:45928138-45928456(+)$1	318	201	232	9.2602
ffffccc"""cccmmmmcccccc]ffffffc	chr6:43100175-43100431(+)$1	256	87	118	9.6755
eeeee!!ccc[bboooooobbccc22eeeee	chr8:11705103-11705347(-)$1	244	75	106	10.3834
eeeee!!cccrrrrrrrrrccc22eeeee]c	chr16:2802588-2802878(+)$1	290	80	111	8.4072
ddd####dddd[ccclllcccdddd22dddd	chr20:60889758-60889985(-)$1	227	182	213	7.9371
eeeee!!ccc[bboooooobbccc22eeeee	chr8:11705147-11705433(-)$1	286	161	192	10.3834
d[eeeee"""cccooooooccc333eeeee2	chr9:116997787-116998016(+)$1	229	64	95	11.7448
dd!!a[ccc[cccnnnnnccc]ccca22ddd	chr11:118921645-118921920(-)$1	275	142	173	11.8478
=========ddddnnnnndddd333======	chr9:117015063-117015311(+)$1	248	42	73	12.6271
e!!bb####cccammmma]ccc333bb]eee	chr16:3421875-3422123(-)$1	248	131	162	11.7025
$a[ggggggg!!ccclllccc4444gggggg	chr22:33197740-33197992(+)$1	252	105	136	10.0454
[dddd[ccc[cccnnnnnccccccdddd]bb	chr9:117008045-117008260(+)$1	215	167	198	11.0785
cc[bb[dddd[bblllbbdddd333bb]ccc	chr9:116997816-116998032(+)$1	216	83	114	9.3612
===========[ccclllccc333=======	chr11:75111333-75111571(+)$1	238	61	92	11.3014
eeebb$$$$$cccnnnnnccc4444bb]eee	chr17:79918551-79918888(-)$1	337	62	93	12.8236
eeeee!!bbddddmmmmdddd]bb4444eee	chr12:6879223-6879476(+)$1	253	84	115	9.0752
[dddd!!eeeeeooooooeeeeedddd]fff	chr20:60911307-60911584(-)$1	277	228	259	8.5496
ffffffbb[ddddnnnnndddd22bb]ffff	chr20:31596252-31596465(+)$1	213	43	74	9.9328
#ffffff[a!!bbnnnnnbb22a]ffffff4	chr6:24357741-24358074(-)$1	333	235	266	9.6142
ff[bb[ccc!!bboooooobb22cccbbfff	chr9:116999160-116999366(+)$1	206	138	169	10.2508
ff[bb[bb[cccnnnnnccc]bb22bb]fff	chr16:89839605-89839850(-)$1	245	11	42	9.9178
[dddd####ddddnnnnndddddddd]cccF	chr9:35072260-35072512(-)$1	252	64	95	10.5400
ddd"""ccc[cccmmmmcccccc4444dddd	chr3:133472368-133472645(+)$1	277	84	115	9.8852
eeeccc[ccc[bblllbb]ccc]ccc333ee	chr17:27047493-27047697(+)$1	204	5	36	9.2314
eeeebb"""eeeeeooooooeeeeebb]eee	chr6:43109569-43109847(+)$1	278	135	166	8.3902
ffccc[a[bb[bbnnnnnbb333bb]a]ccc	chr17:64224097-64224346(-)$1	249	12	43	10.9767
neeeeebbbbcccnnnnnccc]bbccc[bb[	chr17:76969118-76969330(-)$1	212	102	133	9.3604
dd####bb[ddddoooooodddd22bb]ddd	chr9:116997779-116997987(+)$1	208	146	177	9.9247
fffff"""bb[bboooooobb]bbffffffd	chr11:67810657-67810935(+)$1	278	73	104	9.4581
eeeee"""ddddannnnna]dddd333eeee	chr9:116824911-116825127(-)$1	216	35	66	11.5466
cc:ffffff[cccnnnnnccc333ffffff:	chr16:89839650-89839893(-)$1	243	151	182	9.7005
ccc[ccc!!ddddmmmmdddd4444cccccc	chr9:117002399-117002642(+)$1	243	82	113	9.8541
g!!ccc[bb[ccclllcccbb]cccgggggg	chr2:220408156-220408422(-)$1	266	169	200	9.9241
hhhhh[bb!!ddddllldddd4444bb]hhh	chr21:46915235-46915447(+)$1	212	154	185	9.1935

#otherMatches

#Seq PSSM
GCGAGGGGGCAGCGCGCUGCUGGCUCUGUGC	chr4:166300240-166300549(+)$1	309	141	172	10.2312
cacagucaacacuuggucagugCUGCUGGUC	chr9:116823733-116823969(-)$1	236	54	85	10.8323
CCGCCGCCUGCGGCCUUUGCUGCGGGCGCCG	chr16:3767355-3767612(-)$1	257	138	169	8.7470
CUUCGGGCCCGGGAAUCGCCGCCGCCGCCGC	chr2:220435942-220436229(-)$1	287	57	88	11.0699
GGGGAGCUCUGUGGUCCCCCAGGCAUCGCCG	chr17:79803720-79803966(-)$1	246	39	70	8.4333
GCUGUGCAACGGUCUCCUGACUGGUGCUGCA	chr4:1809190-1809416(+)$1	226	26	57	7.7839
UCUCUGUUGCAGGGUCAGCCUGGCAGGAAGG	chr9:117005724-117005941(+)$1	217	50	81	9.3708
CGGGAAGACCCUCUGCCUGAGCGGCUUCAUG	chr11:1774751-1774973(-)$1	222	84	115	10.3167
GGGCUGCGACCUGUCCAUCAGCGUGAAUGUG	chr17:76969076-76969292(-)$1	216	64	95	9.3604
CCGGGACGUGCGCGCUUGGUGCACGAUCCUG	chr6:167369764-167370029(-)$1	265	75	106	9.3087
UGGGAUCACUUCCAACAGUGACGUGUUCUCC	chr17:79813007-79813226(-)$1	219	136	167	8.4562
CCUCUCCCUCCCUUCCUCAGGCAUCAGAGCG	chr17:26697113-26697386(-)$1	273	75	106	12.1553
GAAGCCAGGGCCUCUGGUAAGUACCUGCUCC	chr9:116999166-116999409(+)$1	243	132	163	10.2508
ACCGAGCCUGUGGGAUAUACCAAGGCAGAGG	chr9:116840348-116840591(-)$1	243	60	91	8.2226
GGCCGCUUCAGCCUCUUCGGCCUGGGCGGCG	chr8:57906013-57906363(-)$1	350	318	349	10.1647
GCGGAGUUGUUCCCCCAGGGAGGAUCCGCAG	chr6:119670186-119670424(-)$1	238	41	72	8.9658
GCCUCAUCACCCUGGAGGAGGAGAUGACCAA	chr17:79804207-79804428(-)$1	221	14	45	10.9175
GCCUGCAGGGGCUGCCAGGGCCCCGGGGCGU	chr9:117052428-117052708(+)$1	280	76	107	9.9685
AGGUGGAGGGCUUGGUGGAGAAGAUCCGCUU	chr17:76968289-76968551(-)$1	262	148	179	10.9058
GCGCGCCCUGCUCCGCCGAGAAGCUCGCGCU	chr7:45928138-45928456(+)$1	318	201	232	9.2602
UGGGAGCACGCGGGAGUCCGGCUGCCCACCC	chr6:43100175-43100431(+)$1	256	87	118	9.6755
UGCACGGGGGAGGGAGAUACCCCCAAGUGUA	chr8:11705103-11705347(-)$1	244	75	106	10.3834
UGCGAGUGGCGCAGUUGGAGCCCGUUGCGGC	chr16:2802588-2802878(+)$1	290	80	111	8.4072
GCUGAUGGACCGUGCCCCGCAGGUCAAGGUG	chr20:60889758-60889985(-)$1	227	182	213	7.9371
UGCACGGGGGAGGGAGAUACCCCCAAGUGUA	chr8:11705147-11705433(-)$1	286	161	192	10.3834
UAACCUUCUUUGCUGGUGUGUACUUAGGGUG	chr9:116997787-116998016(+)$1	229	64	95	11.7448
UGGAUGAGAGUGGCGUGCUCAGUCUAGACAG	chr11:118921645-118921920(-)$1	275	142	173	11.8478
GAAGGAGGAAGCUUCCAUAGCUGAUUCCUCC	chr9:117015063-117015311(+)$1	248	42	73	12.6271
CCUGCCCAGUGACAUAUGUUCAACAGCUGCG	chr16:3421875-3422123(-)$1	248	131	162	11.7025
GGAGGGCAGCGCGCCGGAGGCCAAGGUUGCC	chr22:33197740-33197992(+)$1	252	105	136	10.0454
AUGAGUGGCUccauuuauugggcccuuacuc	chr9:117008045-117008260(+)$1	215	167	198	11.0785
GUGUCAGGAGAUCCCGGAUUCCAAGGAGACA	chr9:116997816-116998032(+)$1	216	83	114	9.3612
AGAGCAGUUUCUUGUUUUGCAUGUGGAACUG	chr11:75111333-75111571(+)$1	238	61	92	11.3014
gccgccUCAAGGCCGCCCGCUCCCCGCAGGU	chr17:79918551-79918888(-)$1	337	62	93	12.8236
UUUCUGGCUCCUCAGAUGAGGAAGAAGAAGA	chr12:6879223-6879476(+)$1	253	84	115	9.0752
GGGGAACUGUGCCCACAAGUAUAUCCUGGAG	chr20:60911307-60911584(-)$1	277	228	259	8.5496
UCAGGGGUGGGCUGUUUUGGCUGAGCUCCCU	chr20:31596252-31596465(+)$1	213	43	74	9.9328
UCCUGAAGGAGGUGACCGGCGGCGUUCAGGC	chr6:24357741-24358074(-)$1	333	235	266	9.6142
GAAGCCAGGGCCUCUGGUAAGUACCUGCUCC	chr9:116999160-116999366(+)$1	206	138	169	10.2508
AGUCCUGUUGAGUGUCUUUCCAUCUGGUUUC	chr16:89839605-89839850(-)$1	245	11	42	9.9178
CCUGGAAGAGCCGAGCCCCGGCCCAGUCGGU	chr9:35072260-35072512(-)$1	252	64	95	10.5400
UGCUGUGACACUGGAUGCAGGUUUGGUGUAU	chr3:133472368-133472645(+)$1	277	84	115	9.8852
CAGUGCUACUUUGUUUCAUAGUCGUAUCCCU	chr17:27047493-27047697(+)$1	204	5	36	9.2314
CUGUGUACCAGGGCCACACAGCCCUACUGCA	chr6:43109569-43109847(+)$1	278	135	166	8.3902
UGCUUUGUGCCCUCUUUCAGCCUGUCCCAAG	chr17:64224097-64224346(-)$1	249	12	43	10.9767
GGGCUGCGACCUGUCCAUCAGCGUGAAUGUG	chr17:76969118-76969330(-)$1	212	102	133	9.3604
AGACAAGGUAAUUGCAUGAGAUUUUCCCCUC	chr9:116997779-116997987(+)$1	208	146	177	9.9247
GCCCAAUUGCCCGAUUGCCCGUGCUGGGCAG	chr11:67810657-67810935(+)$1	278	73	104	9.4581
AAGCAAUAGCGGCAAGGAGUCUGCAACUGCU	chr9:116824911-116825127(-)$1	216	35	66	11.5466
GGACAGCUCACAGCUGCACUGGGAGAGCUGA	chr16:89839650-89839893(-)$1	243	151	182	9.7005
CUCUCUGCUUCCCCUCAGGGAUUCCCAGGAG	chr9:117002399-117002642(+)$1	243	82	113	9.8541
CAUCGCUGCUGCUGUCGGUGCUGCGGCCCGC	chr2:220408156-220408422(-)$1	266	169	200	9.9241
GACCUGGGAAUGGCCUGGCCACAGCCUGGGG	chr21:46915235-46915447(+)$1	212	154	185	9.1935

#DB
(((.((((.((((.....)))).)))).)))	chr4:166300240-166300549(+)$1	1	141	172	10.2312
..(((.((.((((.....)))).)))))...	chr9:116823733-116823969(-)$1	1	54	85	10.8323
))).((((((((((....))))))))))(((	chr16:3767355-3767612(-)$1	1	138	169	8.7470
(..(((...(((......))))))..)))..	chr2:220435942-220436229(-)$1	1	57	88	11.0699
((.((((.(((.((...))))))).)).)))	chr17:79803720-79803966(-)$1	1	39	70	8.4333
((...(((.(((((....))))).))).)))	chr4:1809190-1809416(+)$1	1	26	57	7.7839
((.((((..((((.....))))))))))).)	chr9:117005724-117005941(+)$1	1	50	81	9.3708
(.(((((.(((((.....))).)))))).).	chr11:1774751-1774973(-)$1	1	84	115	10.3167
.)))))))(((((.....))).))(((.((.	chr17:76969076-76969292(-)$1	1	64	95	9.3604
(((((((((((((.....))))))).)))).	chr6:167369764-167370029(-)$1	1	75	106	9.3087
(((((.(((.(((....).)).))).)).))	chr17:79813007-79813226(-)$1	1	136	167	8.4562
(.(((.....(((.....)))....))))))	chr17:26697113-26697386(-)$1	1	75	106	12.1553
((.((.(((..((......))..))))))))	chr9:116999166-116999409(+)$1	1	132	163	10.2508
)).))((((.(((......))))))).((((	chr9:116840348-116840591(-)$1	1	60	91	8.2226
)(((((((..(((.....)))..))))))).	chr8:57906013-57906363(-)$1	1	318	349	10.1647
(((((....(((((...)))))..))))).)	chr6:119670186-119670424(-)$1	1	41	72	8.9658
...(((((..(((.....))).)))))....	chr17:79804207-79804428(-)$1	1	14	45	10.9175
.(((...((((((.....))))))))).).)	chr9:117052428-117052708(+)$1	1	76	107	9.9685
(((((((...(((....)))....)))))))	chr17:76968289-76968551(-)$1	1	148	179	10.9058
(((((..((.(((....))).))..))))).	chr7:45928138-45928456(+)$1	1	201	232	9.2602
(((((((...(((....)))))).)))))))	chr6:43100175-43100431(+)$1	1	87	118	9.6755
(((((..(((.((......)))))..)))))	chr8:11705103-11705347(-)$1	1	75	106	10.3834
(((((..(((.........)))..))))).)	chr16:2802588-2802878(+)$1	1	80	111	8.4072
(((....((((.(((...)))))))..))))	chr20:60889758-60889985(-)$1	1	182	213	7.9371
(((((..(((.((......)))))..)))))	chr8:11705147-11705433(-)$1	1	161	192	10.3834
(.(((((...(((......)))...))))).	chr9:116997787-116998016(+)$1	1	64	95	11.7448
((..(.(((.(((.....))).))))..)))	chr11:118921645-118921920(-)$1	1	142	173	11.8478
(((((((((((((.....))))...))))))	chr9:117015063-117015311(+)$1	1	42	73	12.6271
(..((....((((....).)))...)).)))	chr16:3421875-3422123(-)$1	1	131	162	11.7025
.(.(((((((..(((...)))....))))))	chr22:33197740-33197992(+)$1	1	105	136	10.0454
.((((.(((.(((.....)))))))))).))	chr9:117008045-117008260(+)$1	1	167	198	11.0785
((.((.((((.((...))))))...)).)))	chr9:116997816-116998032(+)$1	1	83	114	9.3612
(((((((((((.(((...)))...)))))))	chr11:75111333-75111571(+)$1	1	61	92	11.3014
(((((.....(((.....)))....)).)))	chr17:79918551-79918888(-)$1	1	62	93	12.8236
(((((..((((((....)))).))....)))	chr12:6879223-6879476(+)$1	1	84	115	9.0752
.((((..(((((......))))))))).)))	chr20:60911307-60911584(-)$1	1	228	259	8.5496
((((((((.((((.....))))..)).))))	chr20:31596252-31596465(+)$1	1	43	74	9.9328
.((((((.(..((.....))..).)))))).	chr6:24357741-24358074(-)$1	1	235	266	9.6142
((.((.(((..((......))..))))))))	chr9:116999160-116999366(+)$1	1	138	169	10.2508
((.((.((.(((.....))).))..)).)))	chr16:89839605-89839850(-)$1	1	11	42	9.9178
.((((....((((.....)))))))).))))	chr9:35072260-35072512(-)$1	1	64	95	10.5400
(((...(((.(((....))))))....))))	chr3:133472368-133472645(+)$1	1	84	115	9.8852
((((((.(((.((...)).))).)))...))	chr17:27047493-27047697(+)$1	1	5	36	9.2314
((((((...(((((......))))))).)))	chr6:43109569-43109847(+)$1	1	135	166	8.3902
(((((.(.((.((.....))...)).).)))	chr17:64224097-64224346(-)$1	1	12	43	10.9767
.)))))))(((((.....))).))(((.((.	chr17:76969118-76969330(-)$1	1	102	133	9.3604
((....((.((((......))))..)).)))	chr9:116997779-116997987(+)$1	1	146	177	9.9247
(((((...((.((......)).))))))))(	chr11:67810657-67810935(+)$1	1	73	104	9.4581
(((((...(((((.....).))))...))))	chr9:116824911-116825127(-)$1	1	35	66	11.5466
)).((((((.(((.....)))...)))))).	chr16:89839650-89839893(-)$1	1	151	182	9.7005
(((.(((..((((....))))....))))))	chr9:117002399-117002642(+)$1	1	82	113	9.8541
(..(((.((.(((...))))).)))))))))	chr2:220408156-220408422(-)$1	1	169	200	9.9241
(((((.((..((((...))))....)).)))	chr21:46915235-46915447(+)$1	1	154	185	9.1935

#PSSM
e : 0.22	c : 0.16	f : 0.15	d : 0.09	[ : 0.07	i : 0.03	n : 0.03	h : 0.03	= : 0.03	! : 0.01	b : 0.01	E : 0.01	" : 0.01	$ : 0.01	# : 0.01	g : 0.01	
e : 0.24	f : 0.16	c : 0.15	d : 0.13	! : 0.07	[ : 0.05	i : 0.03	= : 0.03	b : 0.01	g : 0.01	" : 0.01	a : 0.01	h : 0.01	
e : 0.24	[ : 0.13	c : 0.11	d : 0.11	f : 0.09	! : 0.07	i : 0.03	" : 0.03	= : 0.03	a : 0.01	] : 0.01	g : 0.01	# : 0.01	: : 0.01	h : 0.01	
e : 0.22	b : 0.16	c : 0.13	d : 0.11	f : 0.09	[ : 0.03	" : 0.03	g : 0.03	# : 0.03	= : 0.03	: : 0.01	i : 0.01	! : 0.01	h : 0.01	
e : 0.20	b : 0.18	c : 0.15	d : 0.13	f : 0.07	= : 0.05	" : 0.05	g : 0.03	# : 0.03	i : 0.01	a : 0.01	h : 0.01	
[ : 0.18	c : 0.11	! : 0.11	d : 0.09	# : 0.09	e : 0.07	" : 0.07	= : 0.05	f : 0.05	b : 0.03	$ : 0.03	g : 0.03	i : 0.01	
c : 0.16	b : 0.15	! : 0.11	d : 0.09	" : 0.09	# : 0.07	= : 0.05	g : 0.05	$ : 0.03	e : 0.03	f : 0.03	[ : 0.03	i : 0.01	a : 0.01	
c : 0.20	b : 0.18	" : 0.13	d : 0.07	[ : 0.07	= : 0.05	g : 0.05	# : 0.05	! : 0.03	$ : 0.03	e : 0.03	f : 0.03	
c : 0.20	b : 0.15	[ : 0.11	" : 0.09	! : 0.09	d : 0.07	= : 0.05	# : 0.05	g : 0.03	$ : 0.03	f : 0.03	e : 0.01	a : 0.01	
d : 0.22	c : 0.15	[ : 0.15	! : 0.11	b : 0.09	e : 0.07	" : 0.05	= : 0.03	g : 0.03	$ : 0.03	f : 0.01	
c : 0.39	d : 0.22	[ : 0.11	e : 0.07	! : 0.07	= : 0.03	g : 0.01	b : 0.01	f : 0.01	r : 0.01	
c : 0.37	d : 0.20	b : 0.18	e : 0.07	[ : 0.05	= : 0.01	g : 0.01	f : 0.01	r : 0.01	! : 0.01	
c : 0.37	d : 0.18	b : 0.18	e : 0.05	a : 0.05	o : 0.03	= : 0.01	g : 0.01	f : 0.01	r : 0.01	n : 0.01	
n : 0.41	o : 0.18	m : 0.15	e : 0.05	c : 0.05	l : 0.05	= : 0.01	b : 0.01	r : 0.01	d : 0.01	
n : 0.41	o : 0.20	m : 0.18	l : 0.11	c : 0.05	r : 0.01	
n : 0.41	o : 0.20	m : 0.18	l : 0.16	r : 0.01	
n : 0.41	o : 0.20	m : 0.18	l : 0.11	b : 0.03	r : 0.01	c : 0.01	
n : 0.39	o : 0.20	c : 0.11	b : 0.05	l : 0.05	d : 0.05	m : 0.03	a : 0.03	e : 0.01	r : 0.01	
c : 0.37	d : 0.18	o : 0.16	b : 0.05	e : 0.05	] : 0.05	= : 0.01	g : 0.01	f : 0.01	r : 0.01	a : 0.01	
c : 0.47	d : 0.20	b : 0.16	e : 0.05	= : 0.01	g : 0.01	f : 0.01	o : 0.01	] : 0.01	
c : 0.41	d : 0.22	b : 0.13	e : 0.07	] : 0.03	= : 0.01	g : 0.01	f : 0.01	4 : 0.01	2 : 0.01	3 : 0.01	
c : 0.22	d : 0.18	] : 0.16	4 : 0.11	e : 0.07	2 : 0.07	3 : 0.05	b : 0.03	= : 0.01	g : 0.01	f : 0.01	
c : 0.16	b : 0.15	3 : 0.13	d : 0.11	4 : 0.11	2 : 0.11	e : 0.07	] : 0.05	= : 0.01	g : 0.01	f : 0.01	a : 0.01	
c : 0.18	b : 0.15	d : 0.13	4 : 0.13	2 : 0.11	3 : 0.11	] : 0.05	g : 0.03	e : 0.03	= : 0.01	f : 0.01	
c : 0.18	d : 0.15	4 : 0.13	2 : 0.11	3 : 0.09	e : 0.07	f : 0.07	b : 0.05	= : 0.03	g : 0.03	] : 0.01	i : 0.01	
c : 0.18	b : 0.16	d : 0.13	e : 0.09	2 : 0.07	f : 0.07	= : 0.05	] : 0.05	g : 0.05	4 : 0.03	i : 0.01	a : 0.01	3 : 0.01	
b : 0.22	c : 0.15	e : 0.13	d : 0.09	f : 0.07	= : 0.05	g : 0.05	2 : 0.03	4 : 0.03	] : 0.03	3 : 0.03	: : 0.01	i : 0.01	a : 0.01	
] : 0.24	e : 0.13	d : 0.11	c : 0.09	f : 0.09	b : 0.07	= : 0.05	g : 0.05	[ : 0.03	4 : 0.03	i : 0.01	2 : 0.01	3 : 0.01	
e : 0.22	f : 0.16	c : 0.13	d : 0.11	g : 0.07	] : 0.05	3 : 0.03	a : 0.03	b : 0.03	h : 0.03	= : 0.03	4 : 0.01	i : 0.01	
e : 0.20	f : 0.18	c : 0.11	d : 0.11	g : 0.07	] : 0.07	b : 0.05	h : 0.03	= : 0.03	3 : 0.01	2 : 0.01	a : 0.01	4 : 0.01	i : 0.01	
c : 0.16	e : 0.16	d : 0.13	f : 0.11	g : 0.05	3 : 0.03	2 : 0.03	] : 0.03	[ : 0.03	h : 0.03	: : 0.03	4 : 0.03	= : 0.03	i : 0.01	b : 0.01	F : 0.01	

#score	529.3691902711375
#seq	53
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_transcript_m2_run2.txt

#BEAR
ggggggg!!ccc[bb!!bbnnnnnbb22bbccc4444ggg	chr5:32400013-32400271(-)$1	258	68	108	13.0297
gggggg!!ffffff!!bbnnnnnbb22ffffffggggggg	chr7:91602939-91603194(+)$1	255	87	127	12.1128
d####dddd[ccc[cccnnnnncccccc22dddd4444dd	chr7:100203968-100204264(+)$1	296	77	117	13.2239
bb[bb[bb[cccccccccnnnnnccc]ccc333ccc]bbb	chr22:20975896-20976143(-)$1	247	55	95	13.5422
####bb!!ccc!!ccccccooooooccc]cccccc22bb2	chr20:56098976-56099241(-)$1	265	94	134	14.7566
ffdddd[===========oooooo===========]dddd	chr15:44776350-44776631(+)$1	281	211	251	16.2693
f!!eeeee!!ccc!!cccmmmmccc22ccc22eeeeefff	chr2:232325087-232325305(-)$1	218	166	206	13.9340
:eeeee[a!!ccc!!cccmmmmccc]ccc22a333eeeee	chr10:28879565-28879843(+)$1	278	0	40	13.5140
ccc$$$$$==========oooooo==========333ccc	chr15:49033724-49033971(-)$1	247	114	154	16.6864
cc[ccc[===========oooooo===========]cccc	chr2:234749308-234749543(-)$1	235	104	144	17.1425
ccceeeee####bb"""annnnna333bb22eeeee]ccc	chr3:186522279-186522541(-)$1	262	79	119	12.9880
d[a[dddd[ccc!!cccmmmmccc4444cccdddda]ddd	chr2:209204109-209204372(+)$1	263	96	136	13.0055
#dddd####ccc!!ccc[bbmmmmbb]cccccc333dddd	chr14:100589775-100590035(+)$1	260	154	194	13.2107
[bb[accc"""bb[cccoooooocccbb333ccc]a333b	chr11:47311321-47311581(+)$1	260	64	104	15.2852
ee[ccc[a[ccc"""ddddmmmmdddd333cccaccc]ee	chrX:153676734-153676947(+)$1	213	164	204	13.2602
f####bbggggggg[cccnnnnnccc]ggggggg4444bb	chr2:100022271-100022657(-)$1	386	49	89	14.4333
hhccc!!ccc!!cccccclllccc]ccc4444ccc22ccc	chr16:74504990-74505239(-)$1	249	85	125	14.4743
!===========[arrrrrrrrra===========22ddd	chr2:55473376-55473628(-)$1	252	149	189	14.2391
fffffggggggg!!ddddllldddd22ggggggg======	chr19:8530107-8530314(+)$1	207	45	85	12.8234
!ffffff!!ccc[ccclllccc]ccc333ffffff22ddd	chr5:159833408-159833703(-)$1	295	223	263	12.2036
ffffccc"""bb"""cccmmmmccc333bb]ccc]fffff	chr2:232328965-232329218(-)$1	253	26	66	14.4453
ddeeeeeeeeeeccc!!aooooooa22ccc]eeeee4444	chr16:30774638-30774937(+)$1	299	41	81	13.9564
"""ccc[bb[bb"""bboooooobbbbbb]ccc333dddd	chr17:60106800-60107046(-)$1	246	51	91	14.3301
ee[ddddcccccc!!cccmmmmccc22ccc]ccc333ddd	chr5:64095973-64096195(+)$1	222	172	212	15.9726
:eeeee[ccc[ccc"""bblllbb333ccc]ccc]eeeee	chr15:49048347-49048592(-)$1	245	199	239	12.6796
!!ffffff[gggggggccclllccc22ggggggg]fffff	chr19:13051307-13051567(+)$1	260	139	179	13.5342
===!!dddd[ccc!!bboooooobb22ccc]dddd22===	chr2:122220022-122220278(-)$1	256	89	129	15.8067
cccccc[a[ccc!!cccooooooccc]ccc]accc22ccc	chr9:72879126-72879389(+)$1	263	117	157	18.5924
[ccc[ffffff"""cccooooooccc333ffffff]ccc]	chr9:131258284-131258515(+)$1	231	15	55	15.8987
==========gggggggooooooggggggg]=========	chr6:99855970-99856233(-)$1	263	5	45	15.9906
::==========!!cccooooooccc333==========:	chr8:104444806-104445048(+)$1	242	38	78	15.7550
===="""ddddccc[cccnnnnnccc]ccc]dddd=====	chr15:76165666-76165955(+)$1	289	91	131	14.8080
ddeeeeedddd####cccnnnnnccc22dddd]eeeee]d	chr1:158589983-158590254(-)$1	271	222	262	12.5954
e!!ccc####bb!!cccooooooccc22bb22ccc]eeee	chr8:30945273-30945532(+)$1	259	165	205	16.5870
eeee[a!!eeeee[cccooooooccc]eeeee22a]eeee	chr1:168013723-168013968(+)$1	245	202	242	14.0502
##dddd!!ccc[ccccccmmmmccc22ccc22ccc22ddd	chr11:63763915-63764234(+)$1	319	109	149	15.4021
hh[ccc!!ggggggg[aooooooa]ggggggg666666cc	chr3:121413775-121414016(-)$1	241	135	175	12.7452
gggg!!eeeee!!bb[cccmmmmccc]bb22eeeeegggg	chr9:100079271-100079573(+)$1	302	198	238	12.2433
!!dddd[============mmmm============22ddd	chr4:79793666-79793892(+)$1	226	40	80	15.7266
!!ccc$$$$$cccbb[cccmmmmccc22bb]ccc22ccc2	chr1:23647958-23648192(-)$1	234	44	84	13.7766
FFddddggggggg[bb[aooooooa]bbggggggg22ddd	chr17:1576578-1576854(-)$1	276	217	257	13.4281
eee:==========ccc[aooooooa]ccc]=========	chr7:5663602-5663842(-)$1	240	60	100	15.3906
ccdddd[ffffff"""cccmmmmccc333ffffff4444d	chr9:140006592-140006839(-)$1	247	53	93	14.0870
ca[ccc[a[ccc"""ddddlllddddccc]a]ccc]a]cc	chr8:38145994-38146268(-)$1	274	93	133	14.3210
dddd[ddddccc[a!!cccmmmmccc22a]ccc333dddd	chr15:43398089-43398331(-)$1	242	127	167	14.4337
fffff!!bb"""cccddddllldddd]ccc333bb22fff	chr16:89371488-89371837(-)$1	349	270	310	12.4332
b"""bb!!ggggggg[bboooooobb]ggggggg22bb44	chr9:449687-449980(+)$1	293	83	123	14.0749
[==========####cccnnnnnccc4444==========	chr21:45220385-45220594(+)$1	209	5	45	16.9482
ffffff[a[dddd[cccooooooccc]dddd]a]ffffff	chr3:172064900-172065165(+)$1	265	213	253	13.6519
ddd[a!!dddd!!bb[cccoooooocccbb]dddd22a]d	chr4:129003271-129003557(+)$1	286	83	123	13.5558

#otherMatches

#Seq PSSM
AGCAAGACACAGUGUCAGAACCAGUCACACCUGCAUCUCU	chr5:32400013-32400271(-)$1	258	68	108	13.0297
UGCCCAGUUUCGACAAAGAAAAGCUCAGUCGGAUGGGCAG	chr7:91602939-91603194(+)$1	255	87	127	12.1128
UCCUCCGAAGGGAAUGAACUCCUCGUCCAGUUCGUCUCAG	chr7:100203968-100204264(+)$1	296	77	117	13.2239
GGUCUCGUGAAGGCAUCCAUCCAGGAGUGCGUCCUUGACA	chr22:20975896-20976143(-)$1	247	55	95	13.5422
AAAGACCAUCGGAGCCCUAGUGAGUUGGAGGCCGAGCGUA	chr20:56098976-56099241(-)$1	265	94	134	14.7566
UUUGUUAAUAUUUAGAUACUGUUUUAUUUAGGUGUAAGCA	chr15:44776350-44776631(+)$1	281	211	251	16.2693
GAAUAACAAAGGGACUUAAUACUGAAACCUGAUGUUACAU	chr2:232325087-232325305(-)$1	218	166	206	13.9340
AGGCAUUUGGCCAGAGCUGUUUAGUAUGGAAACUCAUGCC	chr10:28879565-28879843(+)$1	278	0	40	13.5140
UGGCAAAAUUACUGGAAACACCUAUUUCUAGUAAGUCCCA	chr15:49033724-49033971(-)$1	247	114	154	16.6864
UGUGUUGCUCGUGCCAUCACGAGGGAUGGCACGAGGGACC	chr2:234749308-234749543(-)$1	235	104	144	17.1425
CCCCGCUGACCAAGGAUCGAGGAGUAGCUGCCAGUGCGGG	chr3:186522279-186522541(-)$1	262	79	119	12.9880
UACGCCACCUGAAGUCAUGUCUGAACAGUCAGUGGGAGGG	chr2:209204109-209204372(+)$1	263	96	136	13.0055
UCCAGAGAAGGUAACCCAGCACCCGCAGGGGCCAGGCUGG	chr14:100589775-100590035(+)$1	260	154	194	13.2107
AUGACCACAGAAGCGGUGUGUGGACCCUGUAGUGAGAACC	chr11:47311321-47311581(+)$1	260	64	104	15.2852
AGACCGUGAGGUAAAGGCUGCCUGGCCCUGACCCCGGCCU	chrX:153676734-153676947(+)$1	213	164	204	13.2602
AUGAUCUGAAGAGGCUAUUUUAUAUAUUUUCUUUUUGUAG	chr2:100022271-100022657(-)$1	386	49	89	14.4333
GACCUGAUGGAGUGUCUGAUACAGAACAAACACCAGAAGG	chr16:74504990-74505239(-)$1	249	85	125	14.4743
GAAGAGGGUAGGACUCUUAAAAUGCUUGCCUUUUUAAUUU	chr2:55473376-55473628(-)$1	252	149	189	14.2391
AUGGUUUGCGUUGUACUGGGUCAGUUAAACGUAACACCUU	chr19:8530107-8530314(+)$1	207	45	85	12.8234
CACACAGUAUGUGCUAAACUGGAACAAUUUUGUGUCCUUG	chr5:159833408-159833703(-)$1	295	223	263	12.2036
CUCGAGCUCUCGCUGGCCUUCGGGUGUACGUGCUCCGGGA	chr2:232328965-232329218(-)$1	253	26	66	14.4453
AGUAUCAUGUUGGAAAGCACUAAGGGAUUCAUAACAUUUU	chr16:30774638-30774937(+)$1	299	41	81	13.9564
CAUCAGGUGGUCUAUGCGAAGAAGCGACAGCUGCUAAAGU	chr17:60106800-60107046(-)$1	246	51	91	14.3301
UGUAGAAAGGUUAGUCCAUUGUUGGUAUGAUCCUAAGUUC	chr5:64095973-64096195(+)$1	222	172	212	15.9726
ACUUGUCUAGACCAGAGUCGUAGAGAAUGGACUAUGCAGG	chr15:49048347-49048592(-)$1	245	199	239	12.6796
GAUUCAGAACCCUGAGUACAAGGUGAGUUUGGGGCUCUGA	chr19:13051307-13051567(+)$1	260	139	179	13.5342
UUUUACAGCUGCAAAAGAAGGAGCUGGUGCUGUUGAUGAA	chr2:122220022-122220278(-)$1	256	89	129	15.8067
UCCUGGACCCCACUUGAAUAUGAUCGUUGGAGCCAAUGGA	chr9:72879126-72879389(+)$1	263	117	157	18.5924
CUGUGUUCCUGUCAUUUUAGAUCGAACACCAGGGGGACAA	chr9:131258284-131258515(+)$1	231	15	55	15.8987
GGAUAUUUUUUAAAUUUACUCACAAGUUUGUAGAAAUAUU	chr6:99855970-99856233(-)$1	263	5	45	15.9906
AAGGAAAGGAAGUGGGAAAUUCAUCCAUUCUUCCUUUCUC	chr8:104444806-104445048(+)$1	242	38	78	15.7550
UCUCUUUGUAGGAUAUAGAAGACUUAGAUCACUAUGAGAU	chr15:76165666-76165955(+)$1	289	91	131	14.8080
UUCCAGCCCUUAUACCUGGUUAACAGUGGAGGUGCUGGAA	chr1:158589983-158590254(-)$1	271	222	262	12.5954
AAGCACUGAAGUAUGUUUGAAAUGACUCACCUGUGAUACC	chr8:30945273-30945532(+)$1	259	165	205	16.5870
AGAUAAUUGCUUUGUAUGGGAAAAUAAAAAGCCUUAAUCU	chr1:168013723-168013968(+)$1	245	202	242	14.0502
CAUCCGCAAGACCAGGCCUGACGGCAACUGUUUCUAUCGG	chr11:63763915-63764234(+)$1	319	109	149	15.4021
UAAGUAAGGAUUUCAGCUCACAUGAUGAAAUUAAUAACUA	chr3:121413775-121414016(-)$1	241	135	175	12.7452
UGGAAGGCUCUCAAGAAGGAGGCCCUGCUGCAGAGUUUCA	chr9:100079271-100079573(+)$1	302	198	238	12.2433
CAGUGCUGACAGUGCUUUAGGACUGGAGCAUUGUUUUGUA	chr4:79793666-79793892(+)$1	226	40	80	15.7266
CUAUGAAAUUCGCCCUGGUAAACACCUUGGAGUGUGCAUU	chr1:23647958-23648192(-)$1	234	44	84	13.7766
GGGGCUGGGAGUGACAUGAACGCGCCUGCACUUCCUGGGU	chr17:1576578-1576854(-)$1	276	217	257	13.4281
CAUCCUUCUCAUUGCUUGCGUUUUAGGAAGAUGAUGAGAA	chr7:5663602-5663842(-)$1	240	60	100	15.3906
CCCCAGAUCCCCUGCAGGACCAUUCCGAGGGGGGACAGGU	chr9:140006592-140006839(-)$1	247	53	93	14.0870
GAAUCGGAGUGCCUGAACAGAAUGUUGCAGUAUGAAUGCC	chr8:38145994-38146268(-)$1	274	93	133	14.3210
CUGGAGGUACUGAGAGGAUGGAAAUCAGCGCGGAGUUACC	chr15:43398089-43398331(-)$1	242	127	167	14.4337
CGGAGCAGCCCAGGCAGGGCGUCCCUGGCCCCCGCACCUC	chr16:89371488-89371837(-)$1	349	270	310	12.4332
GUCUCAUGUUCAGUUUGUUUUGACACCGAUUGAAGUUGCC	chr9:449687-449980(+)$1	293	83	123	14.0749
GAAACAGUUUGACUACGAGGCAGUUGCUAACAGACUGUUU	chr21:45220385-45220594(+)$1	209	5	45	16.9482
ACCUGUUGCCUGCUGCACAGUAUUGCUGUAGACUACAGGU	chr3:172064900-172065165(+)$1	265	213	253	13.6519
GUUGUAAGAUCAGAGAGUCAAGAAAGACCUGGAUCCCGGA	chr4:129003271-129003557(+)$1	286	83	123	13.5558

#DB
(((((((..(((.((..((.....))..)))))....)))	chr5:32400013-32400271(-)$1	1	68	108	13.0297
((((((..((((((..((.....))..)))))))))))))	chr7:91602939-91603194(+)$1	1	87	127	12.1128
(....((((.(((.(((.....))))))..))))....))	chr7:100203968-100204264(+)$1	1	77	117	13.2239
((.((.((.(((((((((.....))).)))...))).)))	chr22:20975896-20976143(-)$1	1	55	95	13.5422
....((..(((..((((((......))).))))))..)).	chr20:56098976-56099241(-)$1	1	94	134	14.7566
((((((.(((((((((((......))))))))))).))))	chr15:44776350-44776631(+)$1	1	211	251	16.2693
(..(((((..(((..(((....)))..)))..))))))))	chr2:232325087-232325305(-)$1	1	166	206	13.9340
.(((((.(..(((..(((....))).)))..)...)))))	chr10:28879565-28879843(+)$1	1	0	40	13.5140
(((.....((((((((((......))))))))))...)))	chr15:49033724-49033971(-)$1	1	114	154	16.6864
((.(((.(((((((((((......))))))))))).))))	chr2:234749308-234749543(-)$1	1	104	144	17.1425
((((((((....((...(.....)...))..))))).)))	chr3:186522279-186522541(-)$1	1	79	119	12.9880
(.(.((((.(((..(((....)))....)))))))).)))	chr2:209204109-209204372(+)$1	1	96	136	13.0055
.((((....(((..(((.((....)).))))))...))))	chr14:100589775-100590035(+)$1	1	154	194	13.2107
.((.((((...((.(((......)))))...))).)...)	chr11:47311321-47311581(+)$1	1	64	104	15.2852
((.(((.(.(((...((((....))))...))))))).))	chrX:153676734-153676947(+)$1	1	164	204	13.2602
(....(((((((((.(((.....))).)))))))....))	chr2:100022271-100022657(-)$1	1	49	89	14.4333
))(((..(((..((((((...))).)))....)))..)))	chr16:74504990-74505239(-)$1	1	85	125	14.4743
.(((((((((((.(.........))))))))))))..)))	chr2:55473376-55473628(-)$1	1	149	189	14.2391
)))))(((((((..((((...))))..)))))))((((((	chr19:8530107-8530314(+)$1	1	45	85	12.8234
.((((((..(((.(((...))).)))...))))))..)))	chr5:159833408-159833703(-)$1	1	223	263	12.2036
(((((((...((...(((....)))...)).))).)))))	chr2:232328965-232329218(-)$1	1	26	66	14.4453
(((((((((((((((..(......)..))).)))))....	chr16:30774638-30774937(+)$1	1	41	81	13.9564
...(((.((.((...((......)))))).)))...))))	chr17:60106800-60107046(-)$1	1	51	91	14.3301
((.((((((((((..(((....)))..))).)))...)))	chr5:64095973-64096195(+)$1	1	172	212	15.9726
.(((((.(((.(((...((...))...))).))).)))))	chr15:49048347-49048592(-)$1	1	199	239	12.6796
..((((((.((((((((((...)))..))))))).)))))	chr19:13051307-13051567(+)$1	1	139	179	13.5342
(((..((((.(((..((......))..))).))))..)))	chr2:122220022-122220278(-)$1	1	89	129	15.8067
((((((.(.(((..(((......))).))).))))..)))	chr9:72879126-72879389(+)$1	1	117	157	18.5924
.(((.((((((...(((......)))...)))))).))).	chr9:131258284-131258515(+)$1	1	15	55	15.8987
(((((((((((((((((......))))))).)))))))))	chr6:99855970-99856233(-)$1	1	5	45	15.9906
..((((((((((..(((......)))...)))))))))).	chr8:104444806-104445048(+)$1	1	38	78	15.7550
((((...(((((((.(((.....))).))).)))))))))	chr15:76165666-76165955(+)$1	1	91	131	14.8080
(((((((((((....(((.....)))..)))).))))).)	chr1:158589983-158590254(-)$1	1	222	262	12.5954
(..(((....((..(((......)))..))..))).))))	chr8:30945273-30945532(+)$1	1	165	205	16.5870
((((.(..(((((.(((......))).)))))..).))))	chr1:168013723-168013968(+)$1	1	202	242	14.0502
..((((..(((.((((((....)))..)))..)))..)))	chr11:63763915-63764234(+)$1	1	109	149	15.4021
((.(((..(((((((.(......).)))))))......))	chr3:121413775-121414016(-)$1	1	135	175	12.7452
((((..(((((..((.(((....))).))..)))))))))	chr9:100079271-100079573(+)$1	1	198	238	12.2433
..((((.((((((((((((....))))))))))))..)))	chr4:79793666-79793892(+)$1	1	40	80	15.7266
..(((.....(((((.(((....)))..)).)))..))).	chr1:23647958-23648192(-)$1	1	44	84	13.7766
))(((((((((((.((.(......).)))))))))..)))	chr17:1576578-1576854(-)$1	1	217	257	13.4281
))).(((((((((((((.(......).))).)))))))))	chr7:5663602-5663842(-)$1	1	60	100	15.3906
((((((.((((((...(((....)))...))))))....)	chr9:140006592-140006839(-)$1	1	53	93	14.0870
((.(((.(.(((...((((...))))))).).))).).))	chr8:38145994-38146268(-)$1	1	93	133	14.3210
((((.(((((((.(..(((....)))..).)))...))))	chr15:43398089-43398331(-)$1	1	127	167	14.4337
(((((..((...(((((((...)))).)))...))..)))	chr16:89371488-89371837(-)$1	1	270	310	12.4332
(...((..(((((((.((......)).)))))))..))..	chr9:449687-449980(+)$1	1	83	123	14.0749
.((((((((((....(((.....)))....))))))))))	chr21:45220385-45220594(+)$1	1	5	45	16.9482
((((((.(.((((.(((......))).)))).).))))))	chr3:172064900-172065165(+)$1	1	213	253	13.6519
(((.(..((((..((.(((......))))).))))..).)	chr4:129003271-129003557(+)$1	1	83	123	13.5558

#PSSM
f : 0.14	d : 0.12	c : 0.12	e : 0.10	! : 0.10	g : 0.06	# : 0.06	: : 0.06	[ : 0.06	= : 0.06	b : 0.04	h : 0.04	" : 0.02	F : 0.02	
f : 0.12	e : 0.12	c : 0.12	! : 0.10	d : 0.10	= : 0.10	# : 0.08	g : 0.06	b : 0.04	h : 0.04	" : 0.04	[ : 0.02	: : 0.02	F : 0.02	a : 0.02	
d : 0.16	[ : 0.12	e : 0.12	c : 0.12	= : 0.12	f : 0.12	g : 0.06	# : 0.06	! : 0.04	" : 0.04	a : 0.02	b : 0.02	
c : 0.19	d : 0.16	e : 0.14	f : 0.12	= : 0.10	g : 0.06	# : 0.06	[ : 0.06	b : 0.02	$ : 0.02	! : 0.02	: : 0.02	" : 0.02	
c : 0.19	d : 0.16	e : 0.12	= : 0.10	f : 0.10	b : 0.06	[ : 0.06	g : 0.04	# : 0.04	a : 0.04	! : 0.04	$ : 0.02	" : 0.02	
d : 0.19	c : 0.18	e : 0.12	= : 0.10	! : 0.08	f : 0.08	g : 0.06	b : 0.06	$ : 0.04	[ : 0.02	# : 0.02	" : 0.02	a : 0.02	
[ : 0.21	! : 0.18	d : 0.10	e : 0.10	= : 0.10	g : 0.06	f : 0.06	b : 0.04	$ : 0.04	# : 0.04	c : 0.04	" : 0.02	
! : 0.16	= : 0.16	d : 0.14	a : 0.10	e : 0.08	c : 0.08	b : 0.06	g : 0.06	f : 0.06	$ : 0.04	# : 0.04	" : 0.02	
= : 0.18	[ : 0.14	d : 0.12	c : 0.10	g : 0.10	! : 0.08	f : 0.06	# : 0.06	e : 0.06	" : 0.04	b : 0.04	$ : 0.02	
c : 0.27	= : 0.18	g : 0.12	d : 0.08	f : 0.06	[ : 0.06	" : 0.06	e : 0.06	! : 0.04	# : 0.04	$ : 0.02	
c : 0.34	= : 0.16	g : 0.14	d : 0.08	f : 0.06	b : 0.06	e : 0.06	" : 0.04	# : 0.02	! : 0.02	[ : 0.02	
c : 0.34	= : 0.14	g : 0.14	! : 0.08	b : 0.08	# : 0.06	f : 0.04	e : 0.04	" : 0.04	[ : 0.02	d : 0.02	
c : 0.25	! : 0.18	g : 0.12	= : 0.10	" : 0.10	[ : 0.08	f : 0.04	b : 0.04	# : 0.04	e : 0.02	d : 0.02	
! : 0.19	c : 0.18	" : 0.12	b : 0.10	[ : 0.10	= : 0.10	g : 0.10	a : 0.04	# : 0.04	f : 0.02	
c : 0.36	" : 0.14	! : 0.12	b : 0.10	= : 0.08	g : 0.08	[ : 0.04	# : 0.04	r : 0.02	d : 0.02	
c : 0.48	[ : 0.10	! : 0.08	= : 0.08	d : 0.08	" : 0.06	b : 0.06	g : 0.04	r : 0.02	
c : 0.58	b : 0.08	= : 0.08	d : 0.08	! : 0.04	" : 0.04	r : 0.02	l : 0.02	g : 0.02	a : 0.02	[ : 0.02	
c : 0.36	o : 0.21	b : 0.08	= : 0.08	d : 0.08	a : 0.06	[ : 0.04	n : 0.02	m : 0.02	r : 0.02	l : 0.02	
o : 0.34	n : 0.16	c : 0.14	m : 0.12	b : 0.06	d : 0.06	l : 0.06	r : 0.02	= : 0.02	a : 0.02	
o : 0.40	m : 0.23	n : 0.18	l : 0.12	b : 0.02	r : 0.02	c : 0.02	
o : 0.40	m : 0.25	n : 0.18	l : 0.12	r : 0.02	c : 0.02	
o : 0.40	m : 0.23	n : 0.18	l : 0.08	c : 0.06	r : 0.02	d : 0.02	
o : 0.40	c : 0.18	n : 0.16	m : 0.14	d : 0.06	r : 0.02	] : 0.02	b : 0.02	
c : 0.52	o : 0.18	b : 0.08	d : 0.08	a : 0.06	n : 0.02	m : 0.02	g : 0.02	= : 0.02	
c : 0.48	b : 0.12	= : 0.10	d : 0.08	o : 0.06	3 : 0.04	] : 0.04	a : 0.04	4 : 0.02	g : 0.02	
c : 0.42	2 : 0.16	= : 0.10	b : 0.08	3 : 0.06	d : 0.06	] : 0.04	g : 0.04	4 : 0.02	a : 0.02	
2 : 0.25	] : 0.21	3 : 0.14	c : 0.12	= : 0.10	b : 0.06	4 : 0.04	g : 0.04	d : 0.02	
c : 0.36	3 : 0.12	g : 0.12	2 : 0.10	= : 0.10	b : 0.10	4 : 0.04	f : 0.02	e : 0.02	d : 0.02	
c : 0.30	b : 0.16	g : 0.14	3 : 0.12	= : 0.10	4 : 0.04	d : 0.04	f : 0.02	2 : 0.02	] : 0.02	e : 0.02	a : 0.02	
c : 0.27	g : 0.14	= : 0.12	b : 0.10	f : 0.08	2 : 0.08	] : 0.06	3 : 0.04	4 : 0.04	d : 0.04	e : 0.02	
] : 0.21	c : 0.14	= : 0.14	2 : 0.12	g : 0.12	f : 0.08	d : 0.06	3 : 0.06	4 : 0.02	e : 0.02	a : 0.02	
c : 0.21	= : 0.18	d : 0.12	g : 0.12	f : 0.08	e : 0.08	2 : 0.06	3 : 0.04	a : 0.04	] : 0.04	4 : 0.02	
c : 0.32	= : 0.18	d : 0.10	g : 0.10	f : 0.08	e : 0.08	3 : 0.06	] : 0.02	2 : 0.02	6 : 0.02	a : 0.02	
c : 0.23	= : 0.18	g : 0.12	d : 0.10	e : 0.10	3 : 0.08	f : 0.06	4 : 0.02	a : 0.02	2 : 0.02	6 : 0.02	b : 0.02	] : 0.02	
= : 0.18	c : 0.16	3 : 0.12	e : 0.10	d : 0.08	] : 0.08	f : 0.08	4 : 0.06	g : 0.04	2 : 0.04	a : 0.02	6 : 0.02	b : 0.02	
2 : 0.25	e : 0.14	] : 0.12	= : 0.12	3 : 0.10	4 : 0.08	f : 0.06	c : 0.04	a : 0.04	g : 0.02	6 : 0.02	
2 : 0.21	e : 0.12	= : 0.12	4 : 0.10	d : 0.08	c : 0.08	] : 0.06	3 : 0.06	f : 0.06	g : 0.04	6 : 0.02	a : 0.02	b : 0.02	
d : 0.21	c : 0.14	= : 0.14	f : 0.10	e : 0.10	4 : 0.08	g : 0.06	b : 0.06	] : 0.04	3 : 0.02	6 : 0.02	a : 0.02	
d : 0.23	c : 0.18	= : 0.14	f : 0.10	e : 0.10	g : 0.06	b : 0.06	4 : 0.06	] : 0.04	3 : 0.02	
d : 0.30	c : 0.14	= : 0.12	f : 0.10	e : 0.10	g : 0.06	b : 0.06	2 : 0.04	4 : 0.04	] : 0.02	: : 0.02	

#score	717.3572435198721
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_CDS_m3_run2.txt

#BEAR
!a!!cccqqqqqqqqccc2	chr14:105715428-105715730(-)$1	302	20	39	13.8727
ff!!cccsssssssssscc	chr20:61443866-61444132(+)$1	266	203	222	8.1253
:ffffffqqqqqqqqffff	chr17:43227199-43227497(+)$1	298	200	219	11.9042
ddd[cccqqqqqqqqcccd	chr14:59931821-59932119(-)$1	298	223	242	13.4856
!ffffffqqqqqqqqffff	chr17:17698607-17698864(+)$1	257	216	235	12.8819
:bb[cccqqqqqqqqccc]	chr9:138376659-138376915(+)$1	256	59	78	12.5895
fffff[aqqqqqqqqa]ff	chr17:38279291-38279539(+)$1	248	23	42	13.0248
hhhhhhhqqqqqqqqhhhh	chr22:21800174-21800520(+)$1	346	6	25	11.0986
ccc[cccqqqqqqqqcccc	chr16:8952197-8952547(+)$1	350	239	258	13.9880
fff[cccwwwwwwwwwwww	chr9:138378804-138379087(+)$1	283	38	57	9.2379
"""ddddqqqqqqqqdddd	chr8:144671550-144671842(-)$1	292	133	152	12.9722
e[eeeeeqqqqqqqqeeee	chr6:138754562-138754818(-)$1	256	207	226	12.9710
e"""cccqqqqqqqqccce	chr17:37618278-37618527(+)$1	249	51	70	13.7813
fffddddqqqqqqqqdddd	chr8:144946851-144947111(-)$1	260	6	25	12.9813
ccc[cccqqqqqqqqccc]	chr22:45723781-45724047(+)$1	266	36	55	13.9969
[ffffffqqqqqqqqffff	chr10:101379892-101380167(-)$1	275	39	58	12.8383
gggddddqqqqqqqqdddd	chr19:46215899-46216200(-)$1	301	84	103	13.0626
ff!!cccsssssssssscc	chr20:61443936-61444221(+)$1	285	133	152	8.1253
gggggggqqqqqqqqgggg	chr2:171570277-171570567(-)$1	290	14	33	13.0804
ccc[cccqqqqqqqqcccc	chr5:139493777-139494046(+)$1	269	212	231	13.9880
ccc[cccqqqqqqqqcccc	chr20:31024427-31024653(+)$1	226	15	34	13.9880
eeeee[aqqqqqqqqa]ee	chr19:56127160-56127441(+)$1	281	124	143	13.1001
iiiicccqqqqqqqqccc4	chr8:144671496-144671750(-)$1	254	207	226	13.7240
a[eeeeerrrrrrrrreee	chr14:75265143-75265445(+)$1	302	85	104	7.7054
"""ddddqqqqqqqqdddd	chr8:144940605-144940874(-)$1	269	202	221	12.9722
cc[ddddqqqqqqqqdddd	chr2:227660461-227660713(-)$1	252	170	189	13.1090
dffffffqqqqqqqqffff	chr19:1912527-1912836(+)$1	309	54	73	12.6587
%%eeeeeqqqqqqqqeeee	chr8:144671251-144671480(-)$1	229	104	123	11.6266
!bb"""aqqqqqqqqa333	chr16:87735212-87735475(-)$1	263	77	96	12.5599
bccccccqqqqqqqqccc:	chr16:30793060-30793330(-)$1	270	102	121	12.5884
eeeecccqqqqqqqqccc]	chr20:31022352-31022674(+)$1	322	6	25	13.7055
dd:ddddqqqqqqqqdddd	chr9:134350650-134350917(+)$1	267	181	200	11.6884
g[ccc[aqqqqqqqqaccc	chr20:52197986-52198313(-)$1	327	180	199	13.6178
b[eeeeeqqqqqqqqeeee	chr10:43882509-43882767(-)$1	258	54	73	12.7722
FFFa!!aqqqqqqqqa22a	chr10:77159500-77159768(-)$1	268	64	83	11.4094
eeeeearrrrrrrrra]ee	chr2:227662866-227663182(-)$1	316	196	215	7.5311
!ffffffqqqqqqqqffff	chr6:31599458-31599730(+)$1	272	26	45	12.8819
cceeeeeqqqqqqqqeeee	chr19:2270513-2270848(+)$1	335	130	149	12.9694
fffbbbbqqqqqqqqbb]b	chr16:9185806-9186090(+)$1	284	208	227	11.2803
gggggggssssssssssgg	chr1:27022733-27023026(+)$1	293	135	154	7.4886
cc[ddddqqqqqqqqdddd	chr2:227660379-227660638(-)$1	259	95	114	13.1090
eeee[bbqqqqqqqqbb]e	chr16:89346795-89347072(-)$1	277	156	175	12.0636
FFFFcccqqqqqqqqccc:	chr16:31091061-31091340(+)$1	279	13	32	11.3215
cc[ddddqqqqqqqqdddd	chr17:42255524-42255827(-)$1	303	1	20	13.1090
ea!!cccqqqqqqqqccc2	chr8:94748226-94748487(-)$1	261	178	197	13.7342
eeeeeeeqqqqqqqqeeee	chr5:177658672-177658954(-)$1	282	205	224	12.8114
!ffffffqqqqqqqqffff	chr14:23450758-23451026(-)$1	268	87	106	12.8819
dddddddrrrrrrrrrddd	chr10:77159156-77159405(-)$1	249	89	108	7.1992

#otherMatches

#Seq PSSM
ACAGCCAAGACGUACUGGG	chr14:105715428-105715730(-)$1	302	20	39	13.8727
GCCACGGGGAAGAUAGGCC	chr20:61443866-61444132(+)$1	266	203	222	8.1253
CAUGAGCAAGCAGGAGCUC	chr17:43227199-43227497(+)$1	298	200	219	11.9042
GGCAGCCAGCACUCCGGCG	chr14:59931821-59932119(-)$1	298	223	242	13.4856
ACUGCUGCCACCCACCAGC	chr17:17698607-17698864(+)$1	257	216	235	12.8819
AGAUUCAGACAGUGAUGAU	chr9:138376659-138376915(+)$1	256	59	78	12.5895
GCCCUGGGCUGGGGACAAG	chr17:38279291-38279539(+)$1	248	23	42	13.0248
UCCACUCGGAAGAAGGAGU	chr22:21800174-21800520(+)$1	346	6	25	11.0986
gccauguacagucacacag	chr16:8952197-8952547(+)$1	350	239	258	13.9880
UUCAGUGGACAGCAACGAC	chr9:138378804-138379087(+)$1	283	38	57	9.2379
UCAGGCCCUGUUGCUGGCC	chr8:144671550-144671842(-)$1	292	133	152	12.9722
AUGGGCCACUUCUCAGGUU	chr6:138754562-138754818(-)$1	256	207	226	12.9710
CAAUUCAGAGAGACAUGGG	chr17:37618278-37618527(+)$1	249	51	70	13.7813
UGGAGCUGAAGGAGAAGCU	chr8:144946851-144947111(-)$1	260	6	25	12.9813
GUCGAUCCUCAGCCUGAUG	chr22:45723781-45724047(+)$1	266	36	55	13.9969
ggcggcggGGGUGGGCGCC	chr10:101379892-101380167(-)$1	275	39	58	12.8383
UGGGAUCUGAACGGCGGUC	chr19:46215899-46216200(-)$1	301	84	103	13.0626
GCCACGGGGAAGAUAGGCC	chr20:61443936-61444221(+)$1	285	133	152	8.1253
GAGGAGGGCCACCUGCCUC	chr2:171570277-171570567(-)$1	290	14	33	13.0804
UGGACGUGAAGCAGAACGC	chr5:139493777-139494046(+)$1	269	212	231	13.9880
GUGGCUGCAACCCUUCAGC	chr20:31024427-31024653(+)$1	226	15	34	13.9880
gucugggggugaggacgca	chr19:56127160-56127441(+)$1	281	124	143	13.1001
CCCCGGUAUGAUGCAGCCG	chr8:144671496-144671750(-)$1	254	207	226	13.7240
GGUAGCCGGGACAGAGGGU	chr14:75265143-75265445(+)$1	302	85	104	7.7054
GAAGGGCGUGCUGCGGCCC	chr8:144940605-144940874(-)$1	269	202	221	12.9722
GGGCUGCUAGCAUUUGCAG	chr2:227660461-227660713(-)$1	252	170	189	13.1090
GGCUCUUCUCCACGCAGGA	chr19:1912527-1912836(+)$1	309	54	73	12.6587
ACGGGCCGAUGGGGAGGCC	chr8:144671251-144671480(-)$1	229	104	123	11.6266
ACGGGAGAAGGAUGGCGGA	chr16:87735212-87735475(-)$1	263	77	96	12.5599
CCUGUCCACAGAUCAGGAA	chr16:30793060-30793330(-)$1	270	102	121	12.5884
CAGACAUUAAAGCCCGUGC	chr20:31022352-31022674(+)$1	322	6	25	13.7055
AGCGGCCGUGGCCGGGGCC	chr9:134350650-134350917(+)$1	267	181	200	11.6884
UGUGGACGGGAGGCAGCCG	chr20:52197986-52198313(-)$1	327	180	199	13.6178
CAGGGCCCUAUGACCGGCC	chr10:43882509-43882767(-)$1	258	54	73	12.7722
CCCGGAGGGCAAGGACGAC	chr10:77159500-77159768(-)$1	268	64	83	11.4094
GGACCCGCAUUCAAAGAGG	chr2:227662866-227663182(-)$1	316	196	215	7.5311
ACUAUUCGUAUGAAAGAGU	chr6:31599458-31599730(+)$1	272	26	45	12.8819
UCGGUCGAGCUUUCCCGAC	chr19:2270513-2270848(+)$1	335	130	149	12.9694
GCCCCCCGAGCUGCAGGAG	chr16:9185806-9186090(+)$1	284	208	227	11.2803
UCUCCGCGGACGAGACAGC	chr1:27022733-27023026(+)$1	293	135	154	7.4886
GGGCUGCUAGCAUUUGCAG	chr2:227660379-227660638(-)$1	259	95	114	13.1090
GAGGCGCCGUACCCCGCCC	chr16:89346795-89347072(-)$1	277	156	175	12.0636
CCGGGGCAAGCAGAAGUCG	chr16:31091061-31091340(+)$1	279	13	32	11.3215
CCUCCGCAGUUGGAGGCGG	chr17:42255524-42255827(-)$1	303	1	20	13.1090
UGAGUCUGUUAAGGAAGAA	chr8:94748226-94748487(-)$1	261	178	197	13.7342
CAGAAACAAUCCGAAGUUU	chr5:177658672-177658954(-)$1	282	205	224	12.8114
GGGGCCGUGCCUGUUUGGC	chr14:23450758-23451026(-)$1	268	87	106	12.8819
GGCGUGGCACUUGACCCCA	chr10:77159156-77159405(-)$1	249	89	108	7.1992

#DB
.(..(((........))).	chr14:105715428-105715730(-)$1	1	20	39	13.8727
((..(((..........))	chr20:61443866-61444132(+)$1	1	203	222	8.1253
.((((((........))))	chr17:43227199-43227497(+)$1	1	200	219	11.9042
(((.(((........))))	chr14:59931821-59932119(-)$1	1	223	242	13.4856
.((((((........))))	chr17:17698607-17698864(+)$1	1	216	235	12.8819
.((.(((........))).	chr9:138376659-138376915(+)$1	1	59	78	12.5895
(((((.(........).))	chr17:38279291-38279539(+)$1	1	23	42	13.0248
(((((((........))))	chr22:21800174-21800520(+)$1	1	6	25	11.0986
(((.(((........))))	chr16:8952197-8952547(+)$1	1	239	258	13.9880
(((.(((............	chr9:138378804-138379087(+)$1	1	38	57	9.2379
...((((........))))	chr8:144671550-144671842(-)$1	1	133	152	12.9722
(.(((((........))))	chr6:138754562-138754818(-)$1	1	207	226	12.9710
(...(((........))))	chr17:37618278-37618527(+)$1	1	51	70	13.7813
(((((((........))))	chr8:144946851-144947111(-)$1	1	6	25	12.9813
(((.(((........))).	chr22:45723781-45724047(+)$1	1	36	55	13.9969
.((((((........))))	chr10:101379892-101380167(-)$1	1	39	58	12.8383
)))((((........))))	chr19:46215899-46216200(-)$1	1	84	103	13.0626
((..(((..........))	chr20:61443936-61444221(+)$1	1	133	152	8.1253
(((((((........))))	chr2:171570277-171570567(-)$1	1	14	33	13.0804
(((.(((........))))	chr5:139493777-139494046(+)$1	1	212	231	13.9880
(((.(((........))))	chr20:31024427-31024653(+)$1	1	15	34	13.9880
(((((.(........).))	chr19:56127160-56127441(+)$1	1	124	143	13.1001
(((((((........))).	chr8:144671496-144671750(-)$1	1	207	226	13.7240
(.(((((.........)))	chr14:75265143-75265445(+)$1	1	85	104	7.7054
...((((........))))	chr8:144940605-144940874(-)$1	1	202	221	12.9722
((.((((........))))	chr2:227660461-227660713(-)$1	1	170	189	13.1090
(((((((........))))	chr19:1912527-1912836(+)$1	1	54	73	12.6587
..(((((........))))	chr8:144671251-144671480(-)$1	1	104	123	11.6266
.((...(........)...	chr16:87735212-87735475(-)$1	1	77	96	12.5599
))))(((........))).	chr16:30793060-30793330(-)$1	1	102	121	12.5884
(((((((........))).	chr20:31022352-31022674(+)$1	1	6	25	13.7055
)).((((........))))	chr9:134350650-134350917(+)$1	1	181	200	11.6884
(.(((.(........))))	chr20:52197986-52198313(-)$1	1	180	199	13.6178
(.(((((........))))	chr10:43882509-43882767(-)$1	1	54	73	12.7722
((((..(........)..)	chr10:77159500-77159768(-)$1	1	64	83	11.4094
((((((.........).))	chr2:227662866-227663182(-)$1	1	196	215	7.5311
.((((((........))))	chr6:31599458-31599730(+)$1	1	26	45	12.8819
))(((((........))))	chr19:2270513-2270848(+)$1	1	130	149	12.9694
(((((((........)).)	chr16:9185806-9186090(+)$1	1	208	227	11.2803
(((((((..........))	chr1:27022733-27023026(+)$1	1	135	154	7.4886
((.((((........))))	chr2:227660379-227660638(-)$1	1	95	114	13.1090
((((.((........)).)	chr16:89346795-89347072(-)$1	1	156	175	12.0636
(((((((........))).	chr16:31091061-31091340(+)$1	1	13	32	11.3215
((.((((........))))	chr17:42255524-42255827(-)$1	1	1	20	13.1090
((..(((........))).	chr8:94748226-94748487(-)$1	1	178	197	13.7342
))(((((........))))	chr5:177658672-177658954(-)$1	1	205	224	12.8114
.((((((........))))	chr14:23450758-23451026(-)$1	1	87	106	12.8819
(((((((.........)))	chr10:77159156-77159405(-)$1	1	89	108	7.1992

#PSSM
c : 0.16	e : 0.16	f : 0.12	! : 0.10	d : 0.08	g : 0.08	: : 0.04	" : 0.04	b : 0.04	F : 0.04	h : 0.02	[ : 0.02	i : 0.02	a : 0.02	% : 0.02	
f : 0.25	c : 0.18	e : 0.10	[ : 0.08	d : 0.06	" : 0.06	g : 0.06	a : 0.04	b : 0.04	F : 0.04	h : 0.02	i : 0.02	% : 0.02	
f : 0.20	e : 0.20	c : 0.12	! : 0.08	" : 0.06	g : 0.06	[ : 0.06	d : 0.04	b : 0.04	F : 0.04	h : 0.02	i : 0.02	: : 0.02	
e : 0.20	d : 0.18	f : 0.14	[ : 0.14	! : 0.08	" : 0.04	g : 0.04	c : 0.04	h : 0.02	i : 0.02	a : 0.02	b : 0.02	F : 0.02	
c : 0.35	d : 0.18	e : 0.16	f : 0.14	g : 0.04	h : 0.02	" : 0.02	! : 0.02	b : 0.02	[ : 0.02	
c : 0.33	d : 0.18	f : 0.12	e : 0.12	[ : 0.06	g : 0.04	b : 0.04	h : 0.02	" : 0.02	! : 0.02	a : 0.02	
c : 0.33	d : 0.18	f : 0.12	e : 0.12	a : 0.10	g : 0.04	b : 0.04	h : 0.02	r : 0.02	
q : 0.85	s : 0.06	r : 0.06	w : 0.02	
q : 0.85	s : 0.06	r : 0.06	w : 0.02	
q : 0.85	s : 0.06	r : 0.06	w : 0.02	
q : 0.85	s : 0.06	r : 0.06	w : 0.02	
q : 0.85	s : 0.06	r : 0.06	w : 0.02	
q : 0.85	s : 0.06	r : 0.06	w : 0.02	
q : 0.85	s : 0.06	r : 0.06	w : 0.02	
q : 0.85	s : 0.06	r : 0.06	w : 0.02	
c : 0.27	d : 0.16	f : 0.12	a : 0.12	e : 0.10	s : 0.06	r : 0.04	b : 0.04	h : 0.02	w : 0.02	g : 0.02	
c : 0.29	d : 0.18	f : 0.12	e : 0.12	s : 0.06	] : 0.06	b : 0.04	h : 0.02	w : 0.02	g : 0.02	3 : 0.02	2 : 0.02	
c : 0.33	d : 0.18	e : 0.16	f : 0.14	g : 0.04	] : 0.04	h : 0.02	w : 0.02	3 : 0.02	2 : 0.02	
d : 0.20	e : 0.20	f : 0.14	c : 0.12	] : 0.06	2 : 0.04	g : 0.04	: : 0.04	h : 0.02	w : 0.02	4 : 0.02	3 : 0.02	a : 0.02	b : 0.02	

#score	583.615091707369
#seq	48
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_CDS_m2_run2.txt

#BEAR
c[dddd"""a[bb!!a[bboooooobb]a22bb]a333	chr11:65735082-65735321(+)$1	239	101	139	16.4695
bb===========!!cccooooooccc22=========	chr17:46919137-46919373(+)$1	236	90	128	16.7476
ccc[eeeeeeeeee"""bboooooobb]eeeee333ee	chr17:37809633-37809902(+)$1	269	155	193	14.7252
b[ccc"""ggggggg[cccooooooccc]ggggggg55	chr8:100148790-100149019(+)$1	229	68	106	14.0195
ddd"""bb"""iiiiiiiiiooooooiiiiiiiii333	chrX:135592865-135593138(+)$1	273	73	111	15.9736
$cccccc[gggggggrrrrrrrrrggggggg]ccc333	chr1:39920563-39920833(+)$1	270	134	172	11.2509
##bbdddd[bb[bb"""bboooooobb333bb22bb]d	chr11:2979536-2979819(-)$1	283	212	250	14.1262
#bb[bb!!bb[ffffffbboooooobb]ffffff]bb4	chr19:40771059-40771334(-)$1	275	110	148	13.0261
cc!!ccc####eeeee[bblllbb]eeeee333ccc22	chr21:45496357-45496608(+)$1	251	192	230	12.4788
cc!!dddd####ccc!!cccmmmmccc]ccc4444ddd	chr4:123850216-123850450(+)$1	234	136	174	13.1626
dddd[ccc!!ffffffcccooooooccc]ffffff22c	chr5:139862122-139862347(+)$1	225	104	142	14.4442
gggggg[a!!ccc[cccssssssssssccc]ccc4444	chr7:100482322-100482550(+)$1	228	114	152	11.0657
###dddd####ffffff[aooooooaffffffdddd44	chr5:33455665-33455892(+)$1	227	145	183	14.9307
ee[ccc[dddd[a!!cccooooooccc]a]ddddccc]	chr10:70101322-70101539(+)$1	217	50	88	13.8839
%%%%%iiiiiiiii"""bboooooobb333iiiiiiii	chr1:23647958-23648192(-)$1	234	177	215	14.6922
e]cccdddd!!ddddcccooooooccc]dddd22dddd	chr1:245018807-245019010(-)$1	203	158	196	12.5142
f"""dddd####ffffffooooooffffff22ddddff	chr1:179981063-179981293(+)$1	230	155	193	13.2434
gg"""ccc"""bb[cccoooooocccbb333ccc4444	chr8:22332523-22332765(+)$1	242	111	149	16.7117
Cbbggggggg$$$$$cccooooooccc22ggggggg]b	chr7:132990529-132990818(+)$1	289	224	262	13.2698
iiiiiiii!!a[==========lll==========a]i	chr8:117861139-117861369(-)$1	230	76	114	13.9520
g####ccc"""bb[ddddlllddddbb22ccc4444gg	chr5:132234694-132234934(-)$1	240	161	199	13.0546
[ccciiiiiiiii[bb!!ccclllccc22bbiiiiiii	chr4:1919832-1920070(+)$1	238	112	150	11.9650
===[eeeee!!bb"""cccooooooccc333bb22eee	chr4:83277869-83278146(-)$1	277	58	96	15.0838
[eeeeeeeeeeeeeee[bboooooobb]eeeee]eeee	chr14:56078717-56078979(+)$1	262	120	158	12.7652
[ggggggg"""eeeee"""annnnna333eeeee333g	chr3:140692602-140692948(+)$1	346	128	166	14.3841
ddddccc[bb####eeeeeooooooeeeee333bb]cc	chr9:131247625-131247853(+)$1	228	98	136	12.4971
======[bb"""eeeeeooooooeeeee]bb]======	chr10:51754054-51754289(+)$1	235	161	199	13.3181
e####eeeee####eeeeellleeeee333eeeee22e	chr5:139886438-139886649(+)$1	211	140	178	11.4543
d$$$$$a####dddd[cccoooooocccdddd4444a3	chr5:64859182-64859437(+)$1	255	139	177	15.5082
cc$$$$$ggggggg"""ccclllccc333gggggggcc	chr11:118461082-118461321(+)$1	239	50	88	12.6993
6ccc::==========[bboooooobb]==========	chr10:12076959-12077213(-)$1	254	199	237	14.4902
bb!!dddd####bb[cccooooooccc22bb55555dd	chr12:124832675-124832950(-)$1	275	145	183	12.4902
eea!!dddd!!ccc[a[bboooooobb]acccdddd22	chr19:8520188-8520420(+)$1	232	89	127	15.6148
cc!!dddd"""ffffffbboooooobb22ffffff333	chr11:17323195-17323459(+)$1	264	92	130	17.5070
c!!eeeee[ggggggg[cccnnnnnccc]ggggggg22	chr17:27016458-27016676(+)$1	218	84	122	12.1968
dddd:gggggggbb"""bboooooobb333bb]ggggg	chr19:45555227-45555460(+)$1	233	89	127	14.2894
hhhhhhhh"""gggggggrrrrrrrrrggggggg4444	chr12:123707484-123707766(-)$1	282	104	142	12.0468
HHHbb[ccc!!dddd!!bboooooobb22dddd]cccb	chr11:71820756-71821073(-)$1	317	168	206	12.7638
!ggggggg"""==========mmmm==========ggg	chr2:24533257-24533511(-)$1	254	193	231	13.3567
b!!bb[bb####ddddoooooodddd4444bb]bb444	chr11:118352620-118352907(+)$1	287	59	97	12.3272
ii[bb!!eeeee$$$$$bboooooobb333eeeee22b	chr11:3733802-3734040(-)$1	238	15	53	14.3844
cc"""ccc[eeeee[cccooooooccc333eeeeeccc	chr19:53058051-53058334(+)$1	283	42	80	15.8155
cc"""ccc"""bb[ddddnnnnndddd22bb4444ccc	chr8:41832219-41832440(-)$1	221	90	128	12.5129
a[ggggggga!!bb[cccmmmmcccbb22a4444gggg	chr15:93485972-93486176(+)$1	204	18	56	11.5816
eeeee[bb!!ccc[gggggggooooooggggggg4444	chr4:48178093-48178304(-)$1	211	146	184	12.1141
a[eeeee!!ccc[ccc[cccnnnnncccccc]ccc333	chr8:22472966-22473204(+)$1	238	79	117	12.2142
ggggggg####ddddoooooodddd4444ggggggg33	chr1:214814669-214814896(+)$1	227	22	60	12.1849
sddddccc####ddddcccnnnnnccc333dddd22cc	chr12:6710773-6711032(-)$1	259	182	220	12.5631
bb[accc"""bb[cccoooooocccbb333ccc]a333	chr11:47311321-47311581(+)$1	260	65	103	15.1126
dd"""dddd[eeeee!!bboooooobbeeeee]ddddd	chr22:30975680-30975911(-)$1	231	179	217	13.7948
dd!!bb[eeeee[ffffffooooooffffff333eeee	chr16:19725865-19726143(-)$1	278	76	114	12.5585
dd[ccc[bb!!ffffff!!aooooooa]ffffff22bb	chr19:6739674-6739896(+)$1	222	107	145	12.8698

#otherMatches

#Seq PSSM
GGUGCUGGAGGAGGACGAGGCGGAGCUGGAGCUGCAGA	chr11:65735082-65735321(+)$1	239	101	139	16.4695
GGAUUGGAUUGGCAUCUUUAGAGUAAGUGGUUAAUUCA	chr17:46919137-46919373(+)$1	236	90	128	16.7476
GCAAGCUGCCCAGGGAGCUGACCCGAGACUUGGAGCGC	chr17:37809633-37809902(+)$1	269	155	193	14.7252
AAUGUUUAUUCUGUUUGCAUUGCUUUGUUGGCAGGAGA	chr8:100148790-100149019(+)$1	229	68	106	14.0195
UUUAAUGGCAGUCUCCAUUUAUCCACAGGUGGAGGAAA	chrX:135592865-135593138(+)$1	273	73	111	15.9736
CUCAUUCAGCGGGAUCAGGAGCCAAUCCCGCAGAACAU	chr1:39920563-39920833(+)$1	270	134	172	11.2509
AUUCAUUAUGUUCUUAUAUAAAAUAAUUUUGGUCACCU	chr11:2979536-2979819(-)$1	283	212	250	14.1262
UGCUGCCCUGAGCUGUCCCGAGCUAGGUGACAGCGUAC	chr19:40771059-40771334(-)$1	275	110	148	13.0261
CUGUCUCUAGAAGGCUUUGCUACAUGGCCUGUUGAGUU	chr21:45496357-45496608(+)$1	251	192	230	12.4788
GUUUGGCUCUUUUCUUUGGUGACUAUCUGGAUCAAAgc	chr4:123850216-123850450(+)$1	234	136	174	13.1626
CACUGUGCAGUUUCUUAUUAGCAAAGGUAAAGAAAGGG	chr5:139862122-139862347(+)$1	225	104	142	14.4442
ACUCCGAGAAGGAAGCCAAAAAGGUGAGGUGUCUGUGG	chr7:100482322-100482550(+)$1	228	114	152	11.0657
UAAAUUGAACCAUAGUGCGUGGCCCCCACUGUUAAUAU	chr5:33455665-33455892(+)$1	227	145	183	14.9307
UACUCCUGGAGGCGGCUCUGGCAUGGGAGGUUCUGGAA	chr10:70101322-70101539(+)$1	217	50	88	13.8839
ACAAAAAUGUAUUUAGAAAUUACUUUUGCGAAAUAUGU	chr1:23647958-23648192(-)$1	234	177	215	14.6922
CGGUGGAGGAAGUGGUGGAAUCGGCUAUCCAUACCCUC	chr1:245018807-245019010(-)$1	203	158	196	12.5142
CUAUAAUUAAAAUAGUUGAGAAAACAAUUAAAAAUUGC	chr1:179981063-179981293(+)$1	230	155	193	13.2434
CUAUGAUAGAAGUAGAUGCUCCAAUCACAGGUAUAAAA	chr8:22332523-22332765(+)$1	242	111	149	16.7117
CACCUGUACAUCAAAUCGACUAGCCGAGUUGUGCAGCG	chr7:132990529-132990818(+)$1	289	224	262	13.2698
CUUUUUGGGGGUCAUUUUUAUUCAGGAUGAAGAUGCAU	chr8:117861139-117861369(-)$1	230	76	114	13.9520
UUUUAUUGGUAAGAGUUGGGUCAGCCUGAUAACAUUGC	chr5:132234694-132234934(-)$1	240	161	199	13.0546
GUCAGUGGAGGAGCGGAAAGCCAAGUUCACCUUUCUCU	chr4:1919832-1920070(+)$1	238	112	150	11.9650
UUUCUUGAGUCAGUUUAAUAAUGUAAUUUUUCUCUUUU	chr4:83277869-83278146(-)$1	277	58	96	15.0838
CUUCUGGCUUUUCAUGAAAGAAACAUUAUAUGAUGAAG	chr14:56078717-56078979(+)$1	262	120	158	12.7652
CUGCUUCUACAAUGGAAAAUGAUGAAGAGUCUGUGAAA	chr3:140692602-140692948(+)$1	346	128	166	14.3841
CCUUGAGCUGGAAAUUAUUGUCCUGAAUGAGUACGUCU	chr9:131247625-131247853(+)$1	228	98	136	12.4971
AAUUGAUAGUUUGACAUAAAAGGAUGUCUCUCUUGAUU	chr10:51754054-51754289(+)$1	235	161	199	13.3181
UUAUUGUUCAUGUUUAGUAAGUUACUACUUUGGACUUA	chr5:139886438-139886649(+)$1	211	140	178	11.4543
AGAAGAGGAAAGGUAGCUGCAGACAUAGUACCGGGACG	chr5:64859182-64859437(+)$1	255	139	177	15.5082
GCAUGAUCAUGCUUAGGAUCUCAGAUGACAAGUAUGGC	chr11:118461082-118461321(+)$1	239	50	88	12.6993
AUUGGAAUAUUUUGGGAAAAAAACAUUAUUUGAAAUAU	chr10:12076959-12077213(-)$1	254	199	237	14.4902
CCCCCAUGAGACGGCCGCCCCCAAGCGCACCUAUGACA	chr12:124832675-124832950(-)$1	275	145	183	12.4902
CUCGAAUUCAGUGAAGGAGAACGACCUGCUCAGAAUGA	chr19:8520188-8520420(+)$1	232	89	127	15.6148
CAGAGUGGGAGGCUAAGCAAAGAACUGGAUUUAGUAAG	chr11:17323195-17323459(+)$1	264	92	130	17.5070
GGACCUUGAUGCCUUUGCAGAAGAGCUGGAGAGGCAGG	chr17:27016458-27016676(+)$1	218	84	122	12.1968
UUACCCCUGCAGAAGAAGGACCCAGCCCAGUUCCUGCA	chr19:45555227-45555460(+)$1	233	89	127	14.2894
CAGCUAUUCAAUUUGGUGGAAAAACAAUGCCAAGAACA	chr12:123707484-123707766(-)$1	282	104	142	12.0468
CAGGGAGAUUCCAGGCCAGCCCAAACUACCCUGCAUCC	chr11:71820756-71821073(-)$1	317	168	206	12.7638
AGAAAGAAACUAUUUGUGUUUGAACAGAUACAAAUUUC	chr2:24533257-24533511(-)$1	254	193	231	13.3567
CAAGCAGGUCUCCCAGCCAGCACUGGUCAUCCCGCCUC	chr11:118352620-118352907(+)$1	287	59	97	12.3272
AUUGCAAAGGCAGGUAUUGGGAAAGCAUAAUGUUUAAG	chr11:3733802-3734040(-)$1	238	15	53	14.3844
CAAGAAUUCACACUGGAGAAAAAACUUACAAGUGUAAU	chr19:53058051-53058334(+)$1	283	42	80	15.8155
UUAUAUGUAGACAAUCAGGAUGGCUGGGAUGGCAAACA	chr8:41832219-41832440(-)$1	221	90	128	12.5129
CUUCAGAUAAUUGCAUUCUUGGGAAGCUUUUUAAUAUC	chr15:93485972-93486176(+)$1	204	18	56	11.5816
GUGGAAAUAGUGAAGAAUGAUGAUGGUGUCAUUCCCUG	chr4:48178093-48178304(-)$1	211	146	184	12.1141
GUGGGAGGCCCUGUGCCAGCAGAAAGCUGCAGAGGCAG	chr8:22472966-22473204(+)$1	238	79	117	12.2142
UAGAUGAAAGGGAGAAAAGCAUUUCAGAGUUAUCUGAU	chr1:214814669-214814896(+)$1	227	22	60	12.1849
CCCUCACCAACUACAAGGCCUUCAGCCAGUUUGUCAGG	chr12:6710773-6711032(-)$1	259	182	220	12.5631
UGACCACAGAAGCGGUGUGUGGACCCUGUAGUGAGAAC	chr11:47311321-47311581(+)$1	260	65	103	15.1126
CGGGAUGGGACUGGGCUGGCCUUGACCCCUGGGCCCAC	chr22:30975680-30975911(-)$1	231	179	217	13.7948
CAGCCUCAGGAAGCAGGUGUUUGGCCACUUGGAGUUCC	chr16:19725865-19726143(-)$1	278	76	114	12.5585
GGCACUGAGCUGUGGGUAAGUCCAAUCGGCCCGCCUCU	chr19:6739674-6739896(+)$1	222	107	145	12.8698

#DB
(.((((...(.((..(.((......)).)..)).)...	chr11:65735082-65735321(+)$1	1	101	139	16.4695
(((((((((((((..(((......)))..)))))))))	chr17:46919137-46919373(+)$1	1	90	128	16.7476
(((.((((((((((...((......)).)))))...))	chr17:37809633-37809902(+)$1	1	155	193	14.7252
(.(((...(((((((.(((......))).)))))))..	chr8:100148790-100149019(+)$1	1	68	106	14.0195
(((...((...(((((((((......)))))))))...	chrX:135592865-135593138(+)$1	1	73	111	15.9736
.((((((.(((((((.........))))))).)))...	chr1:39920563-39920833(+)$1	1	134	172	11.2509
..((((((.((.((...((......))...))..)).)	chr11:2979536-2979819(-)$1	1	212	250	14.1262
.((.((..((.((((((((......)).)))))).)).	chr19:40771059-40771334(-)$1	1	110	148	13.0261
((..(((....(((((.((...)).)))))...)))..	chr21:45496357-45496608(+)$1	1	192	230	12.4788
((..((((....(((..(((....))).)))....)))	chr4:123850216-123850450(+)$1	1	136	174	13.1626
((((.(((..(((((((((......))).))))))..)	chr5:139862122-139862347(+)$1	1	104	142	14.4442
((((((.(..(((.(((..........))).)))....	chr7:100482322-100482550(+)$1	1	114	152	11.0657
...((((....((((((.(......)))))))))))..	chr5:33455665-33455892(+)$1	1	145	183	14.9307
((.(((.((((.(..(((......))).).))))))).	chr10:70101322-70101539(+)$1	1	50	88	13.8839
.....(((((((((...((......))...))))))))	chr1:23647958-23648192(-)$1	1	177	215	14.6922
).)))((((..(((((((......))).))))..))))	chr1:245018807-245019010(-)$1	1	158	196	12.5142
(...((((....((((((......))))))..))))))	chr1:179981063-179981293(+)$1	1	155	193	13.2434
((...(((...((.(((......)))))...)))....	chr8:22332523-22332765(+)$1	1	111	149	16.7117
)(((((((((.....(((......)))..))))))).)	chr7:132990529-132990818(+)$1	1	224	262	13.2698
((((((((..(.((((((((((...))))))))))).)	chr8:117861139-117861369(-)$1	1	76	114	13.9520
(....(((...((.((((...))))))..)))....))	chr5:132234694-132234934(-)$1	1	161	199	13.0546
.((((((((((((.((..(((...)))..)))))))))	chr4:1919832-1920070(+)$1	1	112	150	11.9650
(((.(((((..((...(((......)))...))..)))	chr4:83277869-83278146(-)$1	1	58	96	15.0838
.(((((((((((((((.((......)).))))).))))	chr14:56078717-56078979(+)$1	1	120	158	12.7652
.(((((((...(((((...(.....)...)))))...)	chr3:140692602-140692948(+)$1	1	128	166	14.3841
))))(((.((....(((((......)))))...)).))	chr9:131247625-131247853(+)$1	1	98	136	12.4971
((((((.((...(((((......))))).)).))))))	chr10:51754054-51754289(+)$1	1	161	199	13.3181
(....(((((....(((((...)))))...)))))..)	chr5:139886438-139886649(+)$1	1	140	178	11.4543
(.....(....((((.(((......)))))))....).	chr5:64859182-64859437(+)$1	1	139	177	15.5082
((.....(((((((...(((...)))...)))))))))	chr11:118461082-118461321(+)$1	1	50	88	12.6993
.)))..((((((((((.((......)).))))))))))	chr10:12076959-12077213(-)$1	1	199	237	14.4902
((..((((....((.(((......)))..)).....))	chr12:124832675-124832950(-)$1	1	145	183	12.4902
(((..((((..(((.(.((......)).))))))))..	chr19:8520188-8520420(+)$1	1	89	127	15.6148
((..((((...((((((((......))..))))))...	chr11:17323195-17323459(+)$1	1	92	130	17.5070
(..(((((.(((((((.(((.....))).)))))))..	chr17:27016458-27016676(+)$1	1	84	122	12.1968
)))).(((((((((...((......))...)).)))))	chr19:45555227-45555460(+)$1	1	89	127	14.2894
((((((((...(((((((.........)))))))....	chr12:123707484-123707766(-)$1	1	104	142	12.0468
)))((.(((..((((..((......))..)))).))))	chr11:71820756-71821073(-)$1	1	168	206	12.7638
.(((((((...((((((((((....)))))))))))))	chr2:24533257-24533511(-)$1	1	193	231	13.3567
(..((.((....((((......))))....)).))...	chr11:118352620-118352907(+)$1	1	59	97	12.3272
((.((..(((((.....((......))...)))))..)	chr11:3733802-3734040(-)$1	1	15	53	14.3844
((...(((.(((((.(((......)))...))))))))	chr19:53058051-53058334(+)$1	1	42	80	15.8155
((...(((...((.((((.....))))..))....)))	chr8:41832219-41832440(-)$1	1	90	128	12.5129
(.((((((((..((.(((....)))))..)....))))	chr15:93485972-93486176(+)$1	1	18	56	11.5816
(((((.((..(((.(((((((......)))))))....	chr4:48178093-48178304(-)$1	1	146	184	12.1141
(.(((((..(((.(((.(((.....)))))).)))...	chr8:22472966-22473204(+)$1	1	79	117	12.2142
(((((((....((((......))))....)))))))..	chr1:214814669-214814896(+)$1	1	22	60	12.1849
.))))(((....(((((((.....)))...))))..))	chr12:6710773-6711032(-)$1	1	182	220	12.5631
((.((((...((.(((......)))))...))).)...	chr11:47311321-47311581(+)$1	1	65	103	15.1126
((...((((.(((((..((......))))))).)))))	chr22:30975680-30975911(-)$1	1	179	217	13.7948
((..((.(((((.((((((......))))))...))))	chr16:19725865-19726143(-)$1	1	76	114	12.5585
((.(((.((..((((((..(......).))))))..))	chr19:6739674-6739896(+)$1	1	107	145	12.8698

#PSSM
c : 0.17	d : 0.15	b : 0.09	e : 0.09	g : 0.07	# : 0.05	[ : 0.05	i : 0.03	= : 0.03	a : 0.03	$ : 0.01	% : 0.01	f : 0.01	C : 0.01	6 : 0.01	h : 0.01	H : 0.01	! : 0.01	s : 0.01	
c : 0.19	d : 0.15	b : 0.09	g : 0.09	[ : 0.07	# : 0.07	e : 0.07	i : 0.03	= : 0.03	! : 0.03	% : 0.01	] : 0.01	" : 0.01	$ : 0.01	h : 0.01	H : 0.01	
! : 0.13	d : 0.11	c : 0.11	g : 0.09	" : 0.09	[ : 0.07	= : 0.05	b : 0.05	# : 0.05	e : 0.05	$ : 0.03	% : 0.01	i : 0.01	a : 0.01	h : 0.01	H : 0.01	
c : 0.13	d : 0.11	" : 0.11	! : 0.11	g : 0.11	b : 0.07	e : 0.07	[ : 0.05	= : 0.03	# : 0.03	$ : 0.03	% : 0.01	i : 0.01	h : 0.01	a : 0.01	
d : 0.15	c : 0.15	e : 0.11	g : 0.11	" : 0.09	b : 0.09	= : 0.03	i : 0.03	# : 0.03	$ : 0.03	: : 0.03	[ : 0.01	% : 0.01	! : 0.01	h : 0.01	
c : 0.23	d : 0.19	g : 0.13	e : 0.11	i : 0.05	[ : 0.05	= : 0.03	" : 0.03	b : 0.03	$ : 0.03	: : 0.01	h : 0.01	! : 0.01	
c : 0.21	d : 0.17	e : 0.11	g : 0.11	[ : 0.09	b : 0.05	i : 0.05	" : 0.03	= : 0.03	! : 0.03	a : 0.01	$ : 0.01	h : 0.01	
d : 0.17	e : 0.13	c : 0.13	g : 0.11	b : 0.09	# : 0.07	" : 0.05	i : 0.05	= : 0.03	[ : 0.03	! : 0.03	a : 0.01	h : 0.01	
" : 0.19	# : 0.17	e : 0.11	g : 0.11	! : 0.09	b : 0.07	d : 0.07	[ : 0.05	= : 0.03	i : 0.03	c : 0.01	
" : 0.19	# : 0.17	! : 0.17	e : 0.11	g : 0.11	b : 0.05	a : 0.03	= : 0.03	i : 0.03	d : 0.01	c : 0.01	[ : 0.01	
# : 0.21	" : 0.17	e : 0.11	! : 0.11	g : 0.09	c : 0.05	[ : 0.03	= : 0.03	b : 0.03	i : 0.03	f : 0.01	d : 0.01	$ : 0.01	a : 0.01	
e : 0.15	# : 0.13	b : 0.11	g : 0.11	f : 0.09	c : 0.07	d : 0.07	= : 0.05	i : 0.05	[ : 0.05	$ : 0.01	" : 0.01	! : 0.01	
b : 0.17	e : 0.13	f : 0.11	d : 0.11	g : 0.09	= : 0.07	c : 0.07	i : 0.05	[ : 0.05	$ : 0.03	# : 0.03	a : 0.01	
e : 0.13	f : 0.13	[ : 0.11	d : 0.11	g : 0.09	b : 0.07	c : 0.07	! : 0.05	= : 0.05	i : 0.03	$ : 0.03	# : 0.03	" : 0.01	
d : 0.15	f : 0.13	e : 0.13	" : 0.11	g : 0.09	c : 0.09	[ : 0.07	! : 0.05	= : 0.05	$ : 0.03	i : 0.01	b : 0.01	
c : 0.21	f : 0.13	" : 0.11	e : 0.11	d : 0.07	! : 0.05	= : 0.05	g : 0.05	a : 0.03	[ : 0.03	i : 0.01	r : 0.01	b : 0.01	$ : 0.01	o : 0.01	
c : 0.26	[ : 0.13	" : 0.11	f : 0.11	! : 0.07	e : 0.05	o : 0.05	= : 0.03	d : 0.03	g : 0.03	i : 0.01	r : 0.01	$ : 0.01	
c : 0.30	b : 0.26	o : 0.09	f : 0.03	= : 0.03	d : 0.03	! : 0.03	e : 0.03	g : 0.03	i : 0.01	r : 0.01	s : 0.01	[ : 0.01	" : 0.01	
b : 0.26	o : 0.23	c : 0.19	r : 0.03	= : 0.03	e : 0.03	i : 0.01	s : 0.01	a : 0.01	l : 0.01	" : 0.01	n : 0.01	m : 0.01	g : 0.01	f : 0.01	! : 0.01	
o : 0.61	c : 0.09	l : 0.05	r : 0.03	= : 0.03	a : 0.03	n : 0.03	i : 0.01	s : 0.01	m : 0.01	g : 0.01	
o : 0.65	n : 0.09	l : 0.07	r : 0.03	m : 0.03	= : 0.03	s : 0.01	c : 0.01	g : 0.01	
o : 0.65	n : 0.09	l : 0.07	m : 0.05	r : 0.03	d : 0.03	s : 0.01	= : 0.01	
o : 0.61	n : 0.09	l : 0.05	d : 0.05	r : 0.03	m : 0.03	c : 0.03	b : 0.01	s : 0.01	e : 0.01	
o : 0.57	c : 0.07	d : 0.07	n : 0.07	r : 0.03	m : 0.03	l : 0.03	e : 0.03	b : 0.01	s : 0.01	
o : 0.44	c : 0.24	d : 0.07	n : 0.05	e : 0.03	g : 0.01	] : 0.01	s : 0.01	f : 0.01	l : 0.01	r : 0.01	m : 0.01	
c : 0.32	b : 0.30	e : 0.07	o : 0.05	a : 0.03	f : 0.03	= : 0.03	d : 0.03	g : 0.01	s : 0.01	r : 0.01	4 : 0.01	
b : 0.32	c : 0.28	e : 0.07	f : 0.05	= : 0.03	3 : 0.03	4 : 0.03	i : 0.01	g : 0.01	s : 0.01	r : 0.01	d : 0.01	o : 0.01	a : 0.01	
] : 0.19	3 : 0.19	2 : 0.17	c : 0.13	e : 0.07	g : 0.05	f : 0.05	= : 0.03	4 : 0.03	i : 0.01	b : 0.01	
3 : 0.23	2 : 0.17	e : 0.09	f : 0.09	] : 0.07	a : 0.05	g : 0.05	c : 0.05	= : 0.05	d : 0.03	4 : 0.03	i : 0.01	
3 : 0.19	g : 0.15	f : 0.13	e : 0.11	c : 0.09	= : 0.07	b : 0.07	d : 0.05	2 : 0.01	i : 0.01	] : 0.01	4 : 0.01	a : 0.01	
g : 0.15	e : 0.13	b : 0.13	f : 0.11	c : 0.09	d : 0.09	= : 0.07	3 : 0.07	2 : 0.03	i : 0.03	] : 0.01	4 : 0.01	
e : 0.13	g : 0.13	b : 0.09	f : 0.09	c : 0.09	d : 0.09	= : 0.07	i : 0.05	] : 0.05	3 : 0.05	4 : 0.05	2 : 0.01	5 : 0.01	
g : 0.13	e : 0.11	d : 0.11	= : 0.09	c : 0.09	4 : 0.09	f : 0.07	i : 0.05	3 : 0.05	] : 0.05	b : 0.03	2 : 0.03	5 : 0.01	
g : 0.15	d : 0.11	= : 0.09	c : 0.09	4 : 0.09	] : 0.07	f : 0.07	e : 0.07	i : 0.05	2 : 0.05	3 : 0.03	b : 0.03	5 : 0.01	
4 : 0.15	g : 0.13	= : 0.09	c : 0.09	d : 0.09	e : 0.09	i : 0.05	b : 0.05	2 : 0.05	a : 0.03	3 : 0.03	f : 0.03	] : 0.01	5 : 0.01	
3 : 0.15	g : 0.15	4 : 0.13	d : 0.11	c : 0.09	2 : 0.09	= : 0.05	e : 0.05	b : 0.03	i : 0.03	a : 0.01	] : 0.01	5 : 0.01	
3 : 0.15	c : 0.13	2 : 0.11	4 : 0.11	e : 0.07	d : 0.07	g : 0.07	= : 0.05	] : 0.05	b : 0.03	i : 0.03	5 : 0.01	f : 0.01	a : 0.01	
3 : 0.15	4 : 0.13	c : 0.11	e : 0.09	d : 0.09	g : 0.09	b : 0.07	= : 0.05	2 : 0.05	i : 0.05	5 : 0.01	] : 0.01	f : 0.01	

#score	708.209623447235
#seq	52
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_UTR_m2_run2.txt

#BEAR
e[eeeeeooooooeeee	chrX:132670049-132670274(-)$1	225	167	184	9.4740
%%eeeeellleeeeedd	chr16:2806259-2806505(+)$1	246	33	50	8.4467
::eeeeemmmmeeeee:	chr2:61575321-61575625(-)$1	304	285	302	9.3691
[eeeeennnnneeeee]	chr8:25042182-25042461(+)$1	279	52	69	9.8461
[eeeeennnnneeeee]	chr19:45321679-45321912(+)$1	233	99	116	9.8461
:eeeeeooooooeeeee	chr11:129992201-129992509(+)$1	308	212	229	9.7274
c:eeeeemmmmeeeee:	chr2:216230149-216230426(-)$1	277	77	94	9.7460
ddeeeeemmmmeeeee2	chr2:62934030-62934313(+)$1	283	54	71	10.7960
d[eeeeemmmmeeeee]	chr3:133472377-133472635(+)$1	258	178	195	11.3960
!!eeeeemmmmeeeee4	chr7:75610740-75611023(+)$1	283	190	207	11.5842
::eeeeemmmmeeeee:	chr15:72499462-72499720(-)$1	258	43	60	9.3691
Beeeeeooooooeeeee	chr16:87865835-87866134(-)$1	299	23	40	9.6912
::eeeeemmmmeeeee:	chr17:80231242-80231540(-)$1	298	56	73	9.3691
cceeeeemmmmeeeee]	chr11:129998849-129999184(+)$1	335	150	167	11.3104
cceeeeemmmmeeeee]	chr17:76968340-76968610(-)$1	270	1	18	11.3104
$$eeeeemmmmeeeeee	chr8:27467899-27468192(-)$1	293	86	103	11.0619
eeeeeooooooeeeee]	chr19:35502290-35502571(+)$1	281	145	162	9.8667
c[eeeeemmmmeeeee]	chr3:133472346-133472576(+)$1	230	209	226	11.5550
bbeeeeemmmmeeeee]	chr11:129999832-130000059(+)$1	227	175	192	11.0792
:eeeeeooooooeeeee	chr19:1250116-1250380(+)$1	264	52	69	9.7274
!!eeeeemmmmeeeee2	chr6:43738282-43738636(+)$1	354	40	57	11.4707
h!!eeeeellleeeee]	chr13:77900694-77900959(-)$1	265	82	99	9.5228
""eeeeemmmmeeeee4	chr3:133476654-133476890(+)$1	236	202	219	11.4693
[eeeeennnnneeeee3	chrX:152953815-152954124(+)$1	309	84	101	9.7373
e[eeeeeooooooeeee	chrX:132670023-132670249(-)$1	226	142	159	9.4740
:eeeeeooooooeeeee	chr9:117012811-117013048(+)$1	237	103	120	9.7274
[eeeeennnnneeeee]	chr6:43737865-43738088(+)$1	223	159	176	9.8461
eeeeeeemmmmeeeeeg	chr2:242598426-242598703(+)$1	277	21	38	10.8244
e:eeeeemmmmeeeeeI	chr17:48797010-48797278(+)$1	268	190	207	8.7494
Ceeeeeooooooeeeee	chr11:129979306-129979560(+)$1	254	232	249	9.5531
Beeeeeooooooeeeee	chr14:55034447-55034741(+)$1	294	272	289	9.6912
==eeeeemmmmeeeee]	chr20:34302129-34302413(-)$1	284	28	45	11.2776
%%eeeeemmmmeeeee6	chr9:117044636-117044845(+)$1	209	158	175	10.2592
:eeeeeooooooeeeee	chr9:117054337-117054590(+)$1	253	217	234	9.7274
C:eeeeemmmmeeeeed	chr16:9185408-9185740(+)$1	332	77	94	9.6067
[a[ddddmmmmdddda]	chr9:116822408-116822633(-)$1	225	68	85	6.1472
((eeeeemmmmeeeee9	chr2:85768108-85768384(+)$1	276	47	64	9.8420
b[eeeeennnnneeeee	chr17:76969079-76969316(-)$1	237	77	94	9.2752
b!!eeeeellleeeee2	chr9:124094684-124095004(+)$1	320	91	108	9.5877
$$eeeeemmmmeeeee5	chr17:48823799-48824127(+)$1	328	93	110	10.6531
cceeeeemmmmeeeee]	chr18:60383042-60383314(+)$1	272	226	243	11.3104
(eeeeennnnneeeee4	chr2:216226190-216226421(-)$1	231	15	32	9.2771
::eeeeemmmmeeeeec	chr2:36583064-36583348(+)$1	284	239	256	9.8325
eeeeeooooooeeeeeg	chr12:46760761-46761011(-)$1	250	190	207	9.4254
:eeeeeooooooeeeee	chr16:30081337-30081550(+)$1	213	160	177	9.7274
c[aeeeeellleeeee]	chr19:18530285-18530584(+)$1	299	127	144	9.7677
ddeeeeemmmmeeeee:	chr11:130005415-130005675(+)$1	260	44	61	10.1005
eeeeeeennnnneeeee	chr13:98995922-98996220(+)$1	298	20	37	9.0380
a[eeeeemmmmeeeee]	chr6:167369484-167369724(-)$1	240	222	239	11.6315

#otherMatches

#Seq PSSM
UCUUCCUCGAUAAAGGG	chrX:132670049-132670274(-)$1	225	167	184	9.4740
UGGGGCCAGGGGCCUGA	chr16:2806259-2806505(+)$1	246	33	50	8.4467
AGCAGGCAUUUGCCUGG	chr2:61575321-61575625(-)$1	304	285	302	9.3691
Accgcgggcggcgcggg	chr8:25042182-25042461(+)$1	279	52	69	9.8461
AUCUGGACCCCCUGGAG	chr19:45321679-45321912(+)$1	233	99	116	9.8461
CCCAUGUAGAGCCAUGG	chr11:129992201-129992509(+)$1	308	212	229	9.7274
GUGCCAUGACAAUGGUG	chr2:216230149-216230426(-)$1	277	77	94	9.7460
GAGGGAACCCCUUCCCA	chr2:62934030-62934313(+)$1	283	54	71	10.7960
UCCCUGGGACCCCAGGA	chr3:133472377-133472635(+)$1	258	178	195	11.3960
AAGUGCCCGCAGGUGCG	chr7:75610740-75611023(+)$1	283	190	207	11.5842
CUGCCAUACUUGUGGCC	chr15:72499462-72499720(-)$1	258	43	60	9.3691
UGCCCAGACACAUGGGC	chr16:87865835-87866134(-)$1	299	23	40	9.6912
GACCGGUAGGGGCCGGA	chr17:80231242-80231540(-)$1	298	56	73	9.3691
CUGGUGGAGACCCACCU	chr11:129998849-129999184(+)$1	335	150	167	11.3104
CACAGGGGACGCCCUGC	chr17:76968340-76968610(-)$1	270	1	18	11.3104
GACUCCAGAAUUGGAGG	chr8:27467899-27468192(-)$1	293	86	103	11.0619
GGCAGAAUGCACUGCUU	chr19:35502290-35502571(+)$1	281	145	162	9.8667
UCCCUGGGACCCCAGGA	chr3:133472346-133472576(+)$1	230	209	226	11.5550
UACCAGCAUGUGUUGGC	chr11:129999832-130000059(+)$1	227	175	192	11.0792
CGCGCGCUGCUCCGCGC	chr19:1250116-1250380(+)$1	264	52	69	9.7274
AGCGCGCGGGCGUGCGA	chr6:43738282-43738636(+)$1	354	40	57	11.4707
GCCGCCUCCUCGGGGCU	chr13:77900694-77900959(-)$1	265	82	99	9.5228
GAUUGAGUCUUUUCAGG	chr3:133476654-133476890(+)$1	236	202	219	11.4693
cggccgccccccggccc	chrX:152953815-152954124(+)$1	309	84	101	9.7373
UCUUCCUCGAUAAAGGG	chrX:132670023-132670249(-)$1	226	142	159	9.4740
UCUGGUCGGGGAGCCAG	chr9:117012811-117013048(+)$1	237	103	120	9.7274
GCGGUUAGGUGGACCGG	chr6:43737865-43738088(+)$1	223	159	176	9.8461
GCGCAGCUAUAGCUGCA	chr2:242598426-242598703(+)$1	277	21	38	10.8244
CGCGGGCCUUGGCCUGA	chr17:48797010-48797278(+)$1	268	190	207	8.7494
GGCAGGGUUGAAUCUGU	chr11:129979306-129979560(+)$1	254	232	249	9.5531
UGCUCAAGCGCGUGAGC	chr14:55034447-55034741(+)$1	294	272	289	9.6912
auauauuuuuaaguaua	chr20:34302129-34302413(-)$1	284	28	45	11.2776
CCCCUGGCACUCCAGGC	chr9:117044636-117044845(+)$1	209	158	175	10.2592
acauguacaaacacaug	chr9:117054337-117054590(+)$1	253	217	234	9.7274
GACGACGACGACGUUGC	chr16:9185408-9185740(+)$1	332	77	94	9.6067
UCUCUGUGUCCACAGGU	chr9:116822408-116822633(-)$1	225	68	85	6.1472
AUACUUUGUUUAAAGUU	chr2:85768108-85768384(+)$1	276	47	64	9.8420
GACAGCCAGCGGGGCUG	chr17:76969079-76969316(-)$1	237	77	94	9.2752
GCAAGGCUUUGAGCCUC	chr9:124094684-124095004(+)$1	320	91	108	9.5877
AAUUAUUAAGAAGUAGA	chr17:48823799-48824127(+)$1	328	93	110	10.6531
CCCUCCUGCUGAGGAGA	chr18:60383042-60383314(+)$1	272	226	243	11.3104
UCUGUACACUUUACAGU	chr2:216226190-216226421(-)$1	231	15	32	9.2771
gggccccgagaggggcg	chr2:36583064-36583348(+)$1	284	239	256	9.8325
UGCUCAUUGUGGAGCAC	chr12:46760761-46761011(-)$1	250	190	207	9.4254
AGCGAGUCCCUCUUCGU	chr16:30081337-30081550(+)$1	213	160	177	9.7274
CGCCGCCUGACAGGUGU	chr19:18530285-18530584(+)$1	299	127	144	9.7677
GAGCUCCUUCAGGAGCA	chr11:130005415-130005675(+)$1	260	44	61	10.1005
CUGCAGCGAGGAGCUGU	chr13:98995922-98996220(+)$1	298	20	37	9.0380
GGUCGGCGGUCGCUGAG	chr6:167369484-167369724(-)$1	240	222	239	11.6315

#DB
(.(((((......))))	chrX:132670049-132670274(-)$1	1	167	184	9.4740
..(((((...)))))))	chr16:2806259-2806505(+)$1	1	33	50	8.4467
..(((((....))))).	chr2:61575321-61575625(-)$1	1	285	302	9.3691
.(((((.....))))).	chr8:25042182-25042461(+)$1	1	52	69	9.8461
.(((((.....))))).	chr19:45321679-45321912(+)$1	1	99	116	9.8461
.(((((......)))))	chr11:129992201-129992509(+)$1	1	212	229	9.7274
).(((((....))))).	chr2:216230149-216230426(-)$1	1	77	94	9.7460
(((((((....))))).	chr2:62934030-62934313(+)$1	1	54	71	10.7960
(.(((((....))))).	chr3:133472377-133472635(+)$1	1	178	195	11.3960
..(((((....))))).	chr7:75610740-75611023(+)$1	1	190	207	11.5842
..(((((....))))).	chr15:72499462-72499720(-)$1	1	43	60	9.3691
((((((......)))))	chr16:87865835-87866134(-)$1	1	23	40	9.6912
..(((((....))))).	chr17:80231242-80231540(-)$1	1	56	73	9.3691
(((((((....))))).	chr11:129998849-129999184(+)$1	1	150	167	11.3104
(((((((....))))).	chr17:76968340-76968610(-)$1	1	1	18	11.3104
..(((((....))))))	chr8:27467899-27468192(-)$1	1	86	103	11.0619
(((((......))))).	chr19:35502290-35502571(+)$1	1	145	162	9.8667
(.(((((....))))).	chr3:133472346-133472576(+)$1	1	209	226	11.5550
(((((((....))))).	chr11:129999832-130000059(+)$1	1	175	192	11.0792
.(((((......)))))	chr19:1250116-1250380(+)$1	1	52	69	9.7274
..(((((....))))).	chr6:43738282-43738636(+)$1	1	40	57	11.4707
(..(((((...))))).	chr13:77900694-77900959(-)$1	1	82	99	9.5228
..(((((....))))).	chr3:133476654-133476890(+)$1	1	202	219	11.4693
.(((((.....))))).	chrX:152953815-152954124(+)$1	1	84	101	9.7373
(.(((((......))))	chrX:132670023-132670249(-)$1	1	142	159	9.4740
.(((((......)))))	chr9:117012811-117013048(+)$1	1	103	120	9.7274
.(((((.....))))).	chr6:43737865-43738088(+)$1	1	159	176	9.8461
))(((((....)))))(	chr2:242598426-242598703(+)$1	1	21	38	10.8244
).(((((....))))))	chr17:48797010-48797278(+)$1	1	190	207	8.7494
)(((((......)))))	chr11:129979306-129979560(+)$1	1	232	249	9.5531
)(((((......)))))	chr14:55034447-55034741(+)$1	1	272	289	9.6912
(((((((....))))).	chr20:34302129-34302413(-)$1	1	28	45	11.2776
..(((((....))))).	chr9:117044636-117044845(+)$1	1	158	175	10.2592
.(((((......)))))	chr9:117054337-117054590(+)$1	1	217	234	9.7274
(.(((((....)))))(	chr16:9185408-9185740(+)$1	1	77	94	9.6067
.(.((((....))))).	chr9:116822408-116822633(-)$1	1	68	85	6.1472
..(((((....))))).	chr2:85768108-85768384(+)$1	1	47	64	9.8420
(.(((((.....)))))	chr17:76969079-76969316(-)$1	1	77	94	9.2752
(..(((((...))))).	chr9:124094684-124095004(+)$1	1	91	108	9.5877
..(((((....))))).	chr17:48823799-48824127(+)$1	1	93	110	10.6531
(((((((....))))).	chr18:60383042-60383314(+)$1	1	226	243	11.3104
.(((((.....))))).	chr2:216226190-216226421(-)$1	1	15	32	9.2771
..(((((....)))))(	chr2:36583064-36583348(+)$1	1	239	256	9.8325
(((((......)))))(	chr12:46760761-46761011(-)$1	1	190	207	9.4254
.(((((......)))))	chr16:30081337-30081550(+)$1	1	160	177	9.7274
(.((((((...))))).	chr19:18530285-18530584(+)$1	1	127	144	9.7677
))(((((....))))).	chr11:130005415-130005675(+)$1	1	44	61	10.1005
))(((((.....)))))	chr13:98995922-98996220(+)$1	1	20	37	9.0380
(.(((((....))))).	chr6:167369484-167369724(-)$1	1	222	239	11.6315

#PSSM
: : 0.18	e : 0.14	c : 0.12	[ : 0.10	d : 0.06	b : 0.06	% : 0.04	! : 0.04	B : 0.04	$ : 0.04	C : 0.04	( : 0.04	h : 0.02	" : 0.02	= : 0.02	a : 0.02	
e : 0.34	[ : 0.14	: : 0.14	! : 0.08	c : 0.06	% : 0.04	d : 0.04	$ : 0.04	b : 0.02	" : 0.02	= : 0.02	a : 0.02	( : 0.02	
e : 0.91	! : 0.04	[ : 0.02	a : 0.02	
e : 0.97	d : 0.02	
e : 0.97	d : 0.02	
e : 0.93	o : 0.04	d : 0.02	
e : 0.67	o : 0.20	n : 0.10	d : 0.02	
m : 0.53	o : 0.24	n : 0.14	e : 0.06	l : 0.02	
m : 0.53	o : 0.24	n : 0.14	l : 0.08	
m : 0.53	o : 0.24	n : 0.14	l : 0.08	
m : 0.53	o : 0.24	n : 0.14	l : 0.06	e : 0.02	
e : 0.73	o : 0.20	n : 0.04	d : 0.02	
e : 0.93	o : 0.04	d : 0.02	
e : 0.97	d : 0.02	
e : 0.97	d : 0.02	
e : 0.95	d : 0.02	a : 0.02	
] : 0.30	e : 0.26	: : 0.10	2 : 0.06	4 : 0.06	d : 0.04	g : 0.04	3 : 0.02	I : 0.02	6 : 0.02	9 : 0.02	5 : 0.02	c : 0.02	

#score	491.1269410608027
#seq	49
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_transcript_m1_run1.txt

#BEAR
!ccc!!ffffffaooooooa]ffffff22c	chr17:79866691-79866932(-)$1	241	152	182	13.2892
::===========oooooo===========	chr7:100853772-100854024(-)$1	252	67	97	16.8259
dddd[bb[ccc[aooooooacccbb]dddd	chr8:22880289-22880507(-)$1	218	11	41	12.1215
b####ccc!!cccooooooccc333ccc44	chr15:99482355-99482644(+)$1	289	160	190	15.7017
===========[ddddllldddd=======	chr1:153746190-153746459(+)$1	269	53	83	13.4048
=============oooooo===========	chr3:186334170-186334379(+)$1	209	165	195	18.9051
===========rrrrrrrrr==========	chr11:62290443-62290710(-)$1	267	178	208	14.4593
::===========oooooo===========	chr2:242179214-242179431(-)$1	217	124	154	16.8259
bb####bb[ddddoooooodddd]bb4444	chr12:46754872-46755090(-)$1	218	153	183	13.9718
============rrrrrrrrr=========	chr12:7288722-7289002(+)$1	280	17	47	14.4174
dccc!!gggggggooooooggggggg22cc	chr1:93300235-93300437(+)$1	202	10	40	14.7814
FF===========oooooo===========	chr2:242179100-242179335(-)$1	235	28	58	17.5744
Hggggggg[ddddoooooodddd]gggggg	chr3:56700252-56700508(-)$1	256	140	170	14.3881
[ddddccc!!cccooooooccc22ccc]dd	chr6:31239355-31239564(-)$1	209	33	63	14.0089
cc!!iiiiiiiiiooooooiiiiiiiiicc	chr9:124065234-124065444(+)$1	210	101	131	16.7694
[bb[dddd[ddddoooooodddd]dddd]b	chr5:10402541-10402775(+)$1	234	121	151	12.9235
dd!!eeeee!!bboooooobb333eeeeed	chr17:47004269-47004520(+)$1	251	140	170	12.9137
ddd[bbgggggggooooooggggggg]bb2	chr7:103162526-103162742(-)$1	216	180	210	13.2775
=============ppppppp==========	chr2:97499145-97499372(+)$1	227	103	133	12.5742
$$$eeeee!!cccooooooccceeeee22e	chr6:142691428-142691655(+)$1	227	168	198	13.8587
!!eeeee####bboooooobb22eeeee22	chr1:155289318-155289547(+)$1	229	92	122	12.8476
!ccc####eeeeeooooooeeeee4444cc	chr8:11704460-11704759(-)$1	299	254	284	14.4213
============oooooo============	chr11:9459392-9459622(+)$1	230	185	215	17.7093
dd[eeeee!!abboooooobb]a22eeeee	chr12:57554611-57554853(+)$1	242	129	159	12.6464
[ccc####eeeeeooooooeeeee22ccc]	chr19:4501820-4502075(+)$1	255	33	63	13.7854
b[bb[eeeeecccooooooccc]eeeee33	chr19:43011722-43011996(-)$1	274	217	247	13.5794
!!ccc[gggggggoooooogggggggccc2	chr17:73491273-73491536(+)$1	263	110	140	15.1791
ggggggg"""ddddoooooodddd4444gg	chr12:9243819-9244024(-)$1	205	30	60	14.0650
iiiii[a!!ddddoooooodddd22a]iii	chr6:42905385-42905670(+)$1	285	207	237	15.6656
!ccc!!==========lll==========]	chr19:47423349-47423680(+)$1	331	49	79	14.8042
""===========lll===========333	chr10:96356699-96356969(+)$1	270	75	105	15.3464
a!!eeeee!!cccooooooccceeeee22a	chr9:114820680-114820936(-)$1	256	217	247	14.5140
==="""cccddddoooooodddd]ccc22=	chr15:60643325-60643550(-)$1	225	55	85	15.2603
!==========rrrrrrrrr==========	chr22:29190802-29191039(-)$1	237	115	145	14.5825
ggggggg"""ddddoooooodddd4444gg	chr12:9243900-9244107(-)$1	207	113	143	14.0650
####dddd!!cccooooooccc22dddddd	chrX:133027991-133028259(-)$1	268	125	155	13.6402
!ccc!!ffffffaooooooa]ffffff22c	chr17:79866732-79866958(-)$1	226	178	208	13.2892
ggggg[==========lll==========g	chr9:131458170-131458420(+)$1	250	56	86	14.4451
=============oooooo===========	chr3:186334205-186334416(+)$1	211	130	160	18.9051
[cccccc!!ddddoooooodddd]ccc]cc	chr1:35917183-35917472(-)$1	289	51	81	14.8316
bb[==========mmmm==========]bb	chr19:10254486-10254760(-)$1	274	23	53	12.7198
iiiiiiiii"""ddddllldddd333iiii	chr1:76253133-76253389(+)$1	256	165	195	12.1349
dd[bb"""eeeeeooooooeeeee333bb]	chr15:73043989-73044239(-)$1	250	177	207	13.1131
f[a[iiiiiiiiiooooooiiiiiiiii]a	chr15:25221964-25222241(+)$1	277	113	143	16.7112
!!ccc[a!!ddddoooooodddd22accc2	chr21:27354556-27354812(-)$1	256	143	173	14.8940
[a!!dddd[ddddoooooodddddddd22a	chr10:74767535-74767815(-)$1	280	154	184	13.5856
========!!cccooooooccc333=====	chr6:160455379-160455620(+)$1	241	124	154	18.1595
""===========mmmm===========ii	chr2:109381334-109381615(+)$1	281	79	109	14.3654
==========[bboooooobb=========	chr1:183079522-183079762(+)$1	240	206	236	17.4703

#otherMatches

#Seq PSSM
AUACAACUGUGACUUCUGUGUUCACGGCAG	chr17:79866691-79866932(-)$1	241	152	182	13.2892
CAGGGGUGUGUGGAAUGUACCAUACAUCUC	chr7:100853772-100854024(-)$1	252	67	97	16.8259
UCUGAGACAGUGCUUCGAUGACUUUGCAGA	chr8:22880289-22880507(-)$1	218	11	41	12.1215
CAAUAAGUUCGUCCACAGAGACCUUGCUGC	chr15:99482355-99482644(+)$1	289	160	190	15.7017
AAUGGGCAUCUAUGACGUGGUCAGGGUGUC	chr1:153746190-153746459(+)$1	269	53	83	13.4048
UUCUCAUUUUUUCCUUGUAGAGAAAGUGGG	chr3:186334170-186334379(+)$1	209	165	195	18.9051
UGGACAUUAAUGCUCCAGAUGUUGAUGUUC	chr11:62290443-62290710(-)$1	267	178	208	14.4593
CGGGCCUCGGCGGCCGACUCUGCUGGGGCC	chr2:242179214-242179431(-)$1	217	124	154	16.8259
UUGUUUUGGAUUGGGUACACAAUGCACCUG	chr12:46754872-46755090(-)$1	218	153	183	13.9718
GGAGAGGGGAGGCUGCUUUACCCUUCUCUC	chr12:7288722-7289002(+)$1	280	17	47	14.4174
CAAUGUUUUUUUAUUCCCUUGAAAAAUAAU	chr1:93300235-93300437(+)$1	202	10	40	14.7814
CGGGCCUCGGCGGCCGACUCUGCUGGGGCC	chr2:242179100-242179335(-)$1	235	28	58	17.5744
AAGACACGUUUGUCCAUAUGCAGUUGUGUC	chr3:56700252-56700508(-)$1	256	140	170	14.3881
ACGCCGCGAGUCCGAGAGGGGAGCCGCGGG	chr6:31239355-31239564(-)$1	209	33	63	14.0089
AGUACAAGGUGGGUUGGGCCCCACCUUGCU	chr9:124065234-124065444(+)$1	210	101	131	16.7694
GUAGAAAUUGGAGUAUUCCCUCUCAUUUGU	chr5:10402541-10402775(+)$1	234	121	151	12.9235
AGGCUCCAUAAUGAGAAUGCAGAAAUGGAC	chr17:47004269-47004520(+)$1	251	140	170	12.9137
UCCAUCCAGUCAGAACUGGCUGACUGUGAA	chr7:103162526-103162742(-)$1	216	180	210	13.2775
AGGGAGGGUUCAUGAACCAGGUGGAUCCUC	chr2:97499145-97499372(+)$1	227	103	133	12.5742
UUUGCAGAAAGCUUUGAACAGCUCUGCCUU	chr6:142691428-142691655(+)$1	227	168	198	13.8587
GAUGGCGAGAAGGAGCACGCCAAUGCCAAG	chr1:155289318-155289547(+)$1	229	92	122	12.8476
UGCCAGGAUGGUUCAUGUUGACCAAUAGGG	chr8:11704460-11704759(-)$1	299	254	284	14.4213
AAGAAAAGAAAACAGuuuuuuuuuuuuuuu	chr11:9459392-9459622(+)$1	230	185	215	17.7093
CGUGGAUGGAUGGCUCACACCGAGACAUCU	chr12:57554611-57554853(+)$1	242	129	159	12.6464
ACCCAACCGCCCUACAGGCAGGGCAGGGGC	chr19:4501820-4502075(+)$1	255	33	63	13.7854
CAGGAGGAAGACAGGCAAAUGUACUUCUCA	chr19:43011722-43011996(-)$1	274	217	247	13.5794
AGGGCUCCUCCUCAUGGAGGAGGAGGGCCA	chr17:73491273-73491536(+)$1	263	110	140	15.1791
GUCCCUGACACCAUCACCGAGUGGAAGGCA	chr12:9243819-9244024(-)$1	205	30	60	14.0650
CCCUUGGAAGGGUUGCUGUGCCCAGUGAGG	chr6:42905385-42905670(+)$1	285	207	237	15.6656
GGAAGAAUUUCAGGAGUUGCUUUUGGAAUA	chr19:47423349-47423680(+)$1	331	49	79	14.8042
UAUUUUGUUUUCUAUAGGGAAAUAAAAGGA	chr10:96356699-96356969(+)$1	270	75	105	15.3464
GAAUGGAAUAAGGUAUCUUUCUUUCCAAGC	chr9:114820680-114820936(-)$1	256	217	247	14.5140
AGACCAGAGCAGCUGCAGCGCUGACUCCCU	chr15:60643325-60643550(-)$1	225	55	85	15.2603
GCUUUUAAGAUUGUACUUUUAUCUUAAAAG	chr22:29190802-29191039(-)$1	237	115	145	14.5825
GUCCCUGACACCAUCACCGAGUGGAAGGCA	chr12:9243900-9244107(-)$1	207	113	143	14.0650
acuuugguaggccgaggugggcacaccacu	chrX:133027991-133028259(-)$1	268	125	155	13.6402
AUACAACUGUGACUUCUGUGUUCACGGCAG	chr17:79866732-79866958(-)$1	226	178	208	13.2892
UCUUCAUUGGCUAUAUAAAAUGUGGCCAAG	chr9:131458170-131458420(+)$1	250	56	86	14.4451
UUCUCAUUUUUUCCUUGUAGAGAAAGUGGG	chr3:186334205-186334416(+)$1	211	130	160	18.9051
CAGCAGACAGGUACAACUCUACCCUCUAGU	chr1:35917183-35917472(-)$1	289	51	81	14.8316
CACUGGUCAGUCAUGCCUGACUGACCACUG	chr19:10254486-10254760(-)$1	274	23	53	12.7198
AUUUUUUUAUGUUGGAAAGUUUAUUUUAAA	chr1:76253133-76253389(+)$1	256	165	195	12.1349
CAUGAGCUGAAGGAUCAUGCUUUCCUGUCC	chr15:73043989-73044239(-)$1	250	177	207	13.1131
AGGGCAGCUGGUAGAGGAGUACCAGCUGGU	chr15:25221964-25222241(+)$1	277	113	143	16.7112
GAGAAUGUCCCAGGUAAGUCUGGCUCUUCC	chr21:27354556-27354812(-)$1	256	143	173	14.8940
AUUUCACUACAUCUCAGUUGGUGGGUGUUA	chr10:74767535-74767815(-)$1	280	154	184	13.5856
CAGGGUUUCAGCGGAUGAGCGUCAUAAACU	chr6:160455379-160455620(+)$1	241	124	154	18.1595
AUCUGUUUUUUCUACAAAGGAAGGACAGUG	chr2:109381334-109381615(+)$1	281	79	109	14.3654
CCUUUCUUCAAUGACCGGCCGUGGAGGAGG	chr1:183079522-183079762(+)$1	240	206	236	17.4703

#DB
.(((..(((((((......).))))))..)	chr17:79866691-79866932(-)$1	1	152	182	13.2892
..(((((((((((......)))))))))))	chr7:100853772-100854024(-)$1	1	67	97	16.8259
((((.((.(((.(......)))))).))))	chr8:22880289-22880507(-)$1	1	11	41	12.1215
(....(((..(((......)))...)))..	chr15:99482355-99482644(+)$1	1	160	190	15.7017
(((((((((((.((((...)))))))))))	chr1:153746190-153746459(+)$1	1	53	83	13.4048
(((((((((((((......)))))))))))	chr3:186334170-186334379(+)$1	1	165	195	18.9051
(((((((((((.........))))))))))	chr11:62290443-62290710(-)$1	1	178	208	14.4593
..(((((((((((......)))))))))))	chr2:242179214-242179431(-)$1	1	124	154	16.8259
((....((.((((......)))).))....	chr12:46754872-46755090(-)$1	1	153	183	13.9718
((((((((((((.........)))))))))	chr12:7288722-7289002(+)$1	1	17	47	14.4174
((((..(((((((......)))))))..))	chr1:93300235-93300437(+)$1	1	10	40	14.7814
(((((((((((((......)))))))))))	chr2:242179100-242179335(-)$1	1	28	58	17.5744
)(((((((.((((......)))).))))))	chr3:56700252-56700508(-)$1	1	140	170	14.3881
.(((((((..(((......)))..))).))	chr6:31239355-31239564(-)$1	1	33	63	14.0089
((..(((((((((......)))))))))))	chr9:124065234-124065444(+)$1	1	101	131	16.7694
.((.((((.((((......)))).)))).)	chr5:10402541-10402775(+)$1	1	121	151	12.9235
((..(((((..((......))...))))))	chr17:47004269-47004520(+)$1	1	140	170	12.9137
(((.(((((((((......))))))).)).	chr7:103162526-103162742(-)$1	1	180	210	13.2775
(((((((((((((.......))))))))))	chr2:97499145-97499372(+)$1	1	103	133	12.5742
...(((((..(((......))))))))..)	chr6:142691428-142691655(+)$1	1	168	198	13.8587
..(((((....((......))..)))))..	chr1:155289318-155289547(+)$1	1	92	122	12.8476
.(((....(((((......)))))....))	chr8:11704460-11704759(-)$1	1	254	284	14.4213
((((((((((((......))))))))))))	chr11:9459392-9459622(+)$1	1	185	215	17.7093
((.(((((..(((......)).)..)))))	chr12:57554611-57554853(+)$1	1	129	159	12.6464
.(((....(((((......)))))..))).	chr19:4501820-4502075(+)$1	1	33	63	13.7854
(.((.((((((((......))).)))))..	chr19:43011722-43011996(-)$1	1	217	247	13.5794
..(((.(((((((......)))))))))).	chr17:73491273-73491536(+)$1	1	110	140	15.1791
(((((((...((((......))))....))	chr12:9243819-9244024(-)$1	1	30	60	14.0650
(((((.(..((((......))))..).)))	chr6:42905385-42905670(+)$1	1	207	237	15.6656
.(((..((((((((((...)))))))))).	chr19:47423349-47423680(+)$1	1	49	79	14.8042
..(((((((((((...)))))))))))...	chr10:96356699-96356969(+)$1	1	75	105	15.3464
(..(((((..(((......))))))))..)	chr9:114820680-114820936(-)$1	1	217	247	14.5140
(((...(((((((......)))).)))..)	chr15:60643325-60643550(-)$1	1	55	85	15.2603
.((((((((((.........))))))))))	chr22:29190802-29191039(-)$1	1	115	145	14.5825
(((((((...((((......))))....))	chr12:9243900-9244107(-)$1	1	113	143	14.0650
....((((..(((......)))..))))))	chrX:133027991-133028259(-)$1	1	125	155	13.6402
.(((..(((((((......).))))))..)	chr17:79866732-79866958(-)$1	1	178	208	13.2892
(((((.((((((((((...)))))))))))	chr9:131458170-131458420(+)$1	1	56	86	14.4451
(((((((((((((......)))))))))))	chr3:186334205-186334416(+)$1	1	130	160	18.9051
.((((((..((((......)))).))).))	chr1:35917183-35917472(-)$1	1	51	81	14.8316
((.((((((((((....)))))))))).))	chr19:10254486-10254760(-)$1	1	23	53	12.7198
(((((((((...((((...))))...))))	chr1:76253133-76253389(+)$1	1	165	195	12.1349
((.((...(((((......)))))...)).	chr15:73043989-73044239(-)$1	1	177	207	13.1131
(.(.(((((((((......))))))))).)	chr15:25221964-25222241(+)$1	1	113	143	16.7112
..(((.(..((((......))))..)))).	chr21:27354556-27354812(-)$1	1	143	173	14.8940
.(..((((.((((......))))))))..)	chr10:74767535-74767815(-)$1	1	154	184	13.5856
((((((((..(((......)))...)))))	chr6:160455379-160455620(+)$1	1	124	154	18.1595
..(((((((((((....)))))))))))))	chr2:109381334-109381615(+)$1	1	79	109	14.3654
((((((((((.((......)))))))))))	chr1:183079522-183079762(+)$1	1	206	236	17.4703

#PSSM
= : 0.20	! : 0.16	d : 0.12	[ : 0.10	b : 0.08	g : 0.06	: : 0.04	i : 0.04	" : 0.04	F : 0.02	H : 0.02	c : 0.02	$ : 0.02	a : 0.02	# : 0.02	f : 0.02	
= : 0.22	c : 0.16	d : 0.12	g : 0.08	! : 0.08	b : 0.06	: : 0.04	# : 0.04	[ : 0.04	i : 0.04	" : 0.04	F : 0.02	$ : 0.02	a : 0.02	
= : 0.32	c : 0.18	g : 0.08	! : 0.08	d : 0.06	# : 0.06	[ : 0.06	b : 0.04	i : 0.04	$ : 0.02	e : 0.02	a : 0.02	
= : 0.32	c : 0.18	g : 0.08	e : 0.08	# : 0.06	! : 0.06	[ : 0.06	d : 0.04	b : 0.04	i : 0.04	" : 0.02	
= : 0.32	e : 0.10	! : 0.08	# : 0.08	g : 0.08	d : 0.08	i : 0.08	c : 0.06	[ : 0.04	b : 0.04	" : 0.02	
= : 0.32	e : 0.12	! : 0.08	[ : 0.08	c : 0.06	# : 0.06	g : 0.06	i : 0.06	d : 0.06	b : 0.04	" : 0.04	
= : 0.36	g : 0.12	e : 0.12	c : 0.08	i : 0.06	d : 0.06	f : 0.04	b : 0.04	# : 0.04	a : 0.04	" : 0.02	
= : 0.36	e : 0.10	g : 0.08	c : 0.06	i : 0.06	d : 0.06	# : 0.06	" : 0.06	! : 0.06	f : 0.04	[ : 0.02	b : 0.02	
= : 0.34	! : 0.20	e : 0.10	[ : 0.08	g : 0.06	i : 0.06	f : 0.04	c : 0.04	" : 0.04	# : 0.02	
= : 0.34	! : 0.16	d : 0.16	e : 0.08	g : 0.06	" : 0.06	f : 0.04	i : 0.04	c : 0.02	# : 0.02	
= : 0.32	d : 0.20	c : 0.16	g : 0.06	e : 0.06	f : 0.04	i : 0.04	! : 0.02	# : 0.02	a : 0.02	" : 0.02	[ : 0.02	
= : 0.26	d : 0.20	c : 0.14	b : 0.08	g : 0.06	e : 0.06	f : 0.04	[ : 0.04	r : 0.04	i : 0.04	" : 0.02	
d : 0.24	= : 0.22	c : 0.14	b : 0.08	a : 0.06	r : 0.06	g : 0.06	e : 0.06	i : 0.04	o : 0.02	
o : 0.73	d : 0.08	r : 0.06	= : 0.04	m : 0.04	p : 0.02	l : 0.02	
o : 0.77	r : 0.06	d : 0.04	= : 0.04	m : 0.04	p : 0.02	l : 0.02	
o : 0.77	r : 0.06	d : 0.04	= : 0.04	m : 0.04	p : 0.02	l : 0.02	
o : 0.77	l : 0.08	r : 0.06	m : 0.04	p : 0.02	= : 0.02	
o : 0.77	l : 0.08	r : 0.06	= : 0.06	p : 0.02	
o : 0.75	l : 0.08	= : 0.08	r : 0.06	p : 0.02	
= : 0.22	d : 0.20	c : 0.14	b : 0.08	a : 0.06	r : 0.06	g : 0.06	e : 0.06	i : 0.04	o : 0.04	p : 0.02	
= : 0.28	d : 0.24	c : 0.16	b : 0.08	g : 0.06	e : 0.06	] : 0.04	i : 0.04	r : 0.02	
= : 0.32	d : 0.24	c : 0.16	g : 0.06	e : 0.06	f : 0.04	i : 0.04	3 : 0.02	2 : 0.02	] : 0.02	
= : 0.32	d : 0.24	e : 0.10	3 : 0.06	g : 0.06	2 : 0.06	f : 0.04	i : 0.04	c : 0.02	a : 0.02	] : 0.02	
= : 0.34	e : 0.14	] : 0.10	2 : 0.10	3 : 0.08	g : 0.06	d : 0.06	f : 0.04	i : 0.04	b : 0.02	
= : 0.34	e : 0.10	3 : 0.08	g : 0.08	2 : 0.08	c : 0.06	d : 0.06	4 : 0.06	f : 0.04	b : 0.04	i : 0.04	
= : 0.36	e : 0.12	c : 0.08	g : 0.08	d : 0.06	4 : 0.06	f : 0.04	i : 0.04	a : 0.04	3 : 0.04	] : 0.02	b : 0.02	2 : 0.02	
= : 0.36	c : 0.14	e : 0.12	d : 0.08	4 : 0.08	i : 0.06	f : 0.04	] : 0.04	2 : 0.02	g : 0.02	3 : 0.02	
= : 0.32	2 : 0.14	c : 0.08	4 : 0.08	i : 0.08	e : 0.08	d : 0.06	] : 0.06	b : 0.04	g : 0.02	3 : 0.02	
= : 0.30	2 : 0.14	c : 0.14	d : 0.06	g : 0.06	b : 0.06	i : 0.06	4 : 0.04	] : 0.04	e : 0.04	3 : 0.04	
= : 0.28	c : 0.12	d : 0.08	g : 0.08	2 : 0.08	] : 0.06	i : 0.06	a : 0.06	4 : 0.04	b : 0.04	e : 0.04	3 : 0.04	

#score	719.7313788601492
#seq	49
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_UTR_m1_run2.txt

#BEAR
iiiiiii####cccrrrrrrrrrccc4444iiiiii	chr12:110719310-110719663(+)$1	353	211	247	23.0533
bbeeeee!!bbcccrrrrrrrrrccc]bb]eeeee]	chr1:1284370-1284623(-)$1	253	174	210	23.5062
:bb[eeeee[bb[cccpppppppccc]bb]eeeee]	chr22:19418924-19419268(-)$1	344	63	99	20.8443
b[ccc%%%%%%ccc[aooooooaccc4444cccbbf	chr6:31802947-31803177(+)$1	230	165	201	18.5513

#otherMatches

#Seq PSSM
CGCGGCCGGAGUGCGAGGCGGAGGCGAGGAGGCCGC	chr12:110719310-110719663(+)$1	353	211	247	23.0533
cgccAUGGCGGAGACCAAGAUUAUCUACCACAUGGA	chr1:1284370-1284623(-)$1	253	174	210	23.5062
ggcggcggcggcggccgagcgcggguggcggcugug	chr22:19418924-19419268(-)$1	344	63	99	20.8443
GUCCAGCAUUUCUCAGGCUCAACGAGUUCAUGGCCA	chr6:31802947-31803177(+)$1	230	165	201	18.5513

#DB
(((((((....(((.........)))....))))))	chr12:110719310-110719663(+)$1	1	211	247	23.0533
(((((((..(((((.........))).)).))))).	chr1:1284370-1284623(-)$1	1	174	210	23.5062
.((.(((((.((.(((.......))).)).))))).	chr22:19418924-19419268(-)$1	1	63	99	20.8443
(.(((......(((.(......))))....)))))(	chr6:31802947-31803177(+)$1	1	165	201	18.5513

#PSSM
b : 0.50	i : 0.25	: : 0.25	
b : 0.50	i : 0.25	[ : 0.25	
i : 0.25	e : 0.25	b : 0.25	c : 0.25	
i : 0.25	e : 0.25	[ : 0.25	c : 0.25	
e : 0.50	i : 0.25	c : 0.25	
e : 0.50	i : 0.25	% : 0.25	
e : 0.50	i : 0.25	% : 0.25	
# : 0.25	! : 0.25	e : 0.25	% : 0.25	
# : 0.25	! : 0.25	e : 0.25	% : 0.25	
# : 0.25	b : 0.25	[ : 0.25	% : 0.25	
b : 0.50	# : 0.25	% : 0.25	
c : 0.75	b : 0.25	
c : 0.75	[ : 0.25	
c : 1.00	
r : 0.50	c : 0.25	[ : 0.25	
r : 0.50	c : 0.25	a : 0.25	
r : 0.50	p : 0.25	o : 0.25	
r : 0.50	p : 0.25	o : 0.25	
r : 0.50	p : 0.25	o : 0.25	
r : 0.50	p : 0.25	o : 0.25	
r : 0.50	p : 0.25	o : 0.25	
r : 0.50	p : 0.25	o : 0.25	
r : 0.50	p : 0.25	a : 0.25	
c : 1.00	
c : 1.00	
c : 1.00	
4 : 0.50	] : 0.50	
4 : 0.50	b : 0.50	
4 : 0.50	b : 0.50	
4 : 0.50	] : 0.50	
e : 0.50	i : 0.25	c : 0.25	
e : 0.50	i : 0.25	c : 0.25	
e : 0.50	i : 0.25	c : 0.25	
e : 0.50	i : 0.25	b : 0.25	
e : 0.50	i : 0.25	b : 0.25	
] : 0.50	i : 0.25	f : 0.25	

#score	85.95535673049997
#seq	4
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_CDS_m1_run2.txt

#BEAR
ddd!!iiiiiiiii[bbmmmmbb]iiiiiiiiid	chr11:65402439-65402685(+)$1	246	70	104	12.9956
[ccc[bb$$$$$ddddnnnnndddd333bbccc3	chr1:236175118-236175352(-)$1	234	80	114	12.1980
cc:=============nnnnn=============	chr2:132249350-132249616(-)$1	266	179	213	18.3967
%%%%%dddd[bb[cccnnnnnccc]bbdddd444	chr9:19378798-19379017(-)$1	219	53	87	13.8820
================nnnnn=============	chr2:130940241-130940449(+)$1	208	118	152	19.3856
================nnnnn=============	chr2:132249348-132249550(-)$1	202	113	147	19.3856
dddd!!==========nnnnn==========333	chr6:142740945-142741215(+)$1	270	78	112	19.7366
eeeee!!ccca[bbbbnnnnnbb]bb]a]ccc55	chr3:127872390-127872685(+)$1	295	21	55	12.8384
[bb####bb[dddd[aooooooa]dddd]bb444	chr7:103151313-103151526(-)$1	213	110	144	13.0804
[bb####bb[dddd[aooooooa]dddd]bb444	chr7:103151285-103151513(-)$1	228	97	131	13.0804
oeeeee:iiiiiiiiinnnnniiiiiiiii::FF	chr6:74227979-74228183(-)$1	204	156	190	13.0622
ddd!!iiiiiiiii[bbmmmmbb]iiiiiiiiid	chr11:65402421-65402639(+)$1	218	88	122	12.9956
cc"""eeeee!!a!!annnnna22a22eeeee]c	chr2:130947941-130948155(+)$1	214	11	45	13.6036
!!ffffff!!ccc[bbnnnnnbbccc]ffffff2	chr6:43738624-43738851(+)$1	227	42	76	12.6553
%%%%%dddd[bb[cccnnnnnccc]bbdddd444	chr9:19378781-19378998(-)$1	217	34	68	13.8820
================nnnnn=============	chr2:130940203-130940441(+)$1	238	156	190	19.3856
oeeeee:iiiiiiiiinnnnniiiiiiiii::FF	chr6:74227976-74228179(-)$1	203	152	186	13.0622
%%%%%dddd[bb[cccnnnnnccc]bbdddd444	chr9:19378773-19378978(-)$1	205	14	48	13.8820
dddccciiiiiiiiiooooooiiiiiiiii]ccc	chr6:4115960-4116233(-)$1	273	140	174	13.8525

#otherMatches

#Seq PSSM
UGACGAGUGGGUCUUUGCCGACAUGGACCUGCUU	chr11:65402439-65402685(+)$1	246	70	104	12.9956
UGCCAGUGCAAACCUGGUUAUCAGGGAGACGGCU	chr1:236175118-236175352(-)$1	234	80	114	12.1980
GCCCGCUGUCCCUGCCCCAGUGGCGGGGGUGGCG	chr2:132249350-132249616(-)$1	266	179	213	18.3967
UUUUGGAAUAGAAAUAGUAAAUGUGUCAUUCAUU	chr9:19378798-19379017(-)$1	219	53	87	13.8820
GCCCGCUGUCCCUGCCCCAGUGGCGGGGGUGGCG	chr2:130940241-130940449(+)$1	208	118	152	19.3856
GCCCGCUGUCCCUGCCCCAGUGGCGGGGGUGGCG	chr2:132249348-132249550(-)$1	202	113	147	19.3856
UCUGAACAUUGCCAUGUUCAUUGUGGUAAUGGUG	chr6:142740945-142741215(+)$1	270	78	112	19.7366
CGGCGCUGGCGCGGGCGCUAAGCACCACAGCCUC	chr3:127872390-127872685(+)$1	295	21	55	12.8384
UAGAAAGAUUCUGUGACUCCCCUGAUGGUGUGAU	chr7:103151313-103151526(-)$1	213	110	144	13.0804
UAGAAAGAUUCUGUGACUCCCCUGAUGGUGUGAU	chr7:103151285-103151513(-)$1	228	97	131	13.0804
AGACUUUGGAUUUGCACUGAAUGCAAAUCUUUUU	chr6:74227979-74228183(-)$1	204	156	190	13.0622
UGACGAGUGGGUCUUUGCCGACAUGGACCUGCUU	chr11:65402421-65402639(+)$1	218	88	122	12.9956
ACAAAUGUUGCCCAAGGACCACGAGUACAGCAGG	chr2:130947941-130948155(+)$1	214	11	45	13.6036
AGCCGAGCGGAGCCGCGAGAAGUGCUAGCUCGGG	chr6:43738624-43738851(+)$1	227	42	76	12.6553
UUUUGGAAUAGAAAUAGUAAAUGUGUCAUUCAUU	chr9:19378781-19378998(-)$1	217	34	68	13.8820
GCCCGCUGUCCCUGCCCCAGUGGCGGGGGUGGCG	chr2:130940203-130940441(+)$1	238	156	190	19.3856
AGACUUUGGAUUUGCACUGAAUGCAAAUCUUUUU	chr6:74227976-74228179(-)$1	203	152	186	13.0622
UUUUGGAAUAGAAAUAGUAAAUGUGUCAUUCAUU	chr9:19378773-19378978(-)$1	205	14	48	13.8820
GAGUAAAGCAUGUCCAAGGAAGGAUGUGCUGUUA	chr6:4115960-4116233(-)$1	273	140	174	13.8525

#DB
(((..(((((((((.((....)).))))))))))	chr11:65402439-65402685(+)$1	1	70	104	12.9956
.(((.((.....((((.....))))...))))).	chr1:236175118-236175352(-)$1	1	80	114	12.1980
)).(((((((((((((.....)))))))))))))	chr2:132249350-132249616(-)$1	1	179	213	18.3967
.....((((.((.(((.....))).))))))...	chr9:19378798-19379017(-)$1	1	53	87	13.8820
((((((((((((((((.....)))))))))))))	chr2:130940241-130940449(+)$1	1	118	152	19.3856
((((((((((((((((.....)))))))))))))	chr2:132249348-132249550(-)$1	1	113	147	19.3856
((((..((((((((((.....))))))))))...	chr6:142740945-142741215(+)$1	1	78	112	19.7366
(((((..((((.((((.....)).)).).)))..	chr3:127872390-127872685(+)$1	1	21	55	12.8384
.((....((.((((.(......).)))).))...	chr7:103151313-103151526(-)$1	1	110	144	13.0804
.((....((.((((.(......).)))).))...	chr7:103151285-103151513(-)$1	1	97	131	13.0804
.))))).(((((((((.....)))))))))..))	chr6:74227979-74228183(-)$1	1	156	190	13.0622
(((..(((((((((.((....)).))))))))))	chr11:65402421-65402639(+)$1	1	88	122	12.9956
((...(((((..(..(.....)..)..))))).)	chr2:130947941-130948155(+)$1	1	11	45	13.6036
..((((((..(((.((.....))))).)))))).	chr6:43738624-43738851(+)$1	1	42	76	12.6553
.....((((.((.(((.....))).))))))...	chr9:19378781-19378998(-)$1	1	34	68	13.8820
((((((((((((((((.....)))))))))))))	chr2:130940203-130940441(+)$1	1	156	190	19.3856
.))))).(((((((((.....)))))))))..))	chr6:74227976-74228179(-)$1	1	152	186	13.0622
.....((((.((.(((.....))).))))))...	chr9:19378773-19378978(-)$1	1	14	48	13.8820
(((((((((((((((......))))))))).)))	chr6:4115960-4116233(-)$1	1	140	174	13.8525

#PSSM
d : 0.21	[ : 0.15	% : 0.15	= : 0.15	c : 0.10	o : 0.10	e : 0.05	! : 0.05	
d : 0.21	c : 0.15	% : 0.15	= : 0.15	e : 0.15	b : 0.10	! : 0.05	
d : 0.21	% : 0.15	= : 0.15	e : 0.15	b : 0.10	c : 0.05	: : 0.05	" : 0.05	f : 0.05	
= : 0.21	% : 0.15	e : 0.15	! : 0.10	c : 0.10	# : 0.10	d : 0.05	" : 0.05	f : 0.05	
= : 0.21	! : 0.15	% : 0.15	e : 0.15	# : 0.10	[ : 0.05	" : 0.05	f : 0.05	c : 0.05	
= : 0.21	d : 0.15	e : 0.15	i : 0.10	! : 0.10	# : 0.10	b : 0.05	f : 0.05	c : 0.05	
= : 0.26	i : 0.15	d : 0.15	# : 0.10	: : 0.10	b : 0.05	! : 0.05	e : 0.05	f : 0.05	
i : 0.26	= : 0.26	d : 0.15	b : 0.10	$ : 0.05	c : 0.05	e : 0.05	f : 0.05	
i : 0.26	= : 0.26	d : 0.15	b : 0.10	$ : 0.05	c : 0.05	e : 0.05	! : 0.05	
i : 0.26	= : 0.26	[ : 0.26	$ : 0.05	c : 0.05	e : 0.05	! : 0.05	
i : 0.26	= : 0.26	b : 0.15	d : 0.10	$ : 0.05	a : 0.05	! : 0.05	c : 0.05	
i : 0.26	= : 0.26	b : 0.15	d : 0.10	$ : 0.05	[ : 0.05	! : 0.05	c : 0.05	
i : 0.26	= : 0.26	d : 0.15	[ : 0.15	b : 0.05	a : 0.05	c : 0.05	
i : 0.26	= : 0.26	d : 0.15	c : 0.15	b : 0.05	! : 0.05	[ : 0.05	
= : 0.26	[ : 0.21	c : 0.15	i : 0.15	b : 0.10	d : 0.05	! : 0.05	
= : 0.26	b : 0.21	c : 0.15	a : 0.15	i : 0.10	d : 0.05	o : 0.05	
n : 0.73	o : 0.15	b : 0.10	
n : 0.73	o : 0.15	m : 0.10	
n : 0.73	o : 0.15	m : 0.10	
n : 0.73	o : 0.15	m : 0.10	
n : 0.73	o : 0.15	m : 0.10	
= : 0.26	b : 0.21	c : 0.15	i : 0.15	o : 0.10	d : 0.05	a : 0.05	
= : 0.26	b : 0.21	c : 0.15	i : 0.15	a : 0.10	d : 0.05	2 : 0.05	
] : 0.26	= : 0.26	c : 0.21	i : 0.15	d : 0.05	2 : 0.05	
i : 0.26	= : 0.26	d : 0.15	] : 0.15	b : 0.05	a : 0.05	c : 0.05	
i : 0.26	= : 0.26	b : 0.21	d : 0.10	3 : 0.05	2 : 0.05	c : 0.05	
i : 0.26	= : 0.26	b : 0.15	] : 0.10	d : 0.10	3 : 0.05	2 : 0.05	
i : 0.26	= : 0.26	d : 0.26	3 : 0.05	a : 0.05	e : 0.05	f : 0.05	
i : 0.26	= : 0.26	d : 0.15	] : 0.15	b : 0.05	e : 0.05	f : 0.05	
i : 0.26	= : 0.26	b : 0.15	d : 0.15	c : 0.05	e : 0.05	f : 0.05	
= : 0.26	d : 0.15	i : 0.10	c : 0.10	b : 0.10	: : 0.10	e : 0.05	f : 0.05	] : 0.05	
4 : 0.26	= : 0.21	c : 0.15	i : 0.10	: : 0.10	3 : 0.05	e : 0.05	f : 0.05	
4 : 0.26	= : 0.21	i : 0.10	c : 0.10	F : 0.10	3 : 0.05	5 : 0.05	] : 0.05	f : 0.05	
4 : 0.26	= : 0.21	d : 0.10	3 : 0.10	F : 0.10	c : 0.10	5 : 0.05	2 : 0.05	

#score	281.3614079670263
#seq	19
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_CDS_m1_run1.txt

#BEAR
g[aeeeee"""ccc[cccmmmmccc]ccceeeee]a]ggg	chr3:41274968-41275211(+)$1	243	88	128	16.1676
!!iiiiiiiii!!cccooooooccc]iiiiiiiii22ggg	chrX:153063683-153063964(+)$1	281	8	48	20.3455
ddddiiiiiiiii[cccmmmmccciiiiiiiii4444ddd	chr18:43669431-43669704(-)$1	273	92	132	18.7024
f"""ccc"""a[hhhhhhhhlllhhhhhhhh]a4444ccc	chr11:62300156-62300416(-)$1	260	30	70	17.7524
c"""bbggggggg[ddddlllddddggggggg]bb333cc	chr17:4849841-4850089(-)$1	248	77	117	18.7798
fbb[ggggggg[ccc[allla]ccc]ggggggg]bb7777	chr12:123997696-123998056(-)$1	360	219	259	17.1951
cc"""hhhhhhhh[cccnnnnnccc]hhhhhhhh333ccc	chr11:125472097-125472411(+)$1	314	7	47	20.7647

#otherMatches

#Seq PSSM
UUCUGGGUUCAGAUGAUAUAAAUGUGGUCACCUGUGCAGC	chr3:41274968-41275211(+)$1	243	88	128	16.1676
AUGUCUUGGUUCCCCUGGCGGAAGGUGACCAGGGCUGGCU	chrX:153063683-153063964(+)$1	281	8	48	20.3455
GACUGGCAUUAAGGCUGUGGAUAGCUUGGUGCCAAUUGGU	chr18:43669431-43669704(-)$1	273	92	132	18.7024
CAUGCAGGAUGUGGAUCUGAGCCUUGGGUCUCCUAAACUG	chr11:62300156-62300416(-)$1	260	30	70	17.7524
UGCAGGAUGGGGAAUUUAGCAUGGAUCUUCGUACCAAGAG	chr17:4849841-4850089(-)$1	248	77	117	18.7798
CGGGAGGAGUUUGUGGCUUUGGCACUGACUUCUGUCUACA	chr12:123997696-123998056(-)$1	360	219	259	17.1951
AUUUUUCAUUGAGUAAUGCUGAAUUUCUCAAUGGUGUAUC	chr11:125472097-125472411(+)$1	314	7	47	20.7647

#DB
(.((((((...(((.(((....))).)))))))).).)))	chr3:41274968-41275211(+)$1	1	88	128	16.1676
..(((((((((..(((......))).)))))))))..)))	chrX:153063683-153063964(+)$1	1	8	48	20.3455
(((((((((((((.(((....))))))))))))....)))	chr18:43669431-43669704(-)$1	1	92	132	18.7024
(...(((...(.((((((((...)))))))).)....)))	chr11:62300156-62300416(-)$1	1	30	70	17.7524
(...(((((((((.((((...))))))))))).))...))	chr17:4849841-4850089(-)$1	1	77	117	18.7798
(((.(((((((.(((.(...).))).))))))).))....	chr12:123997696-123998056(-)$1	1	219	259	17.1951
((...((((((((.(((.....))).))))))))...)))	chr11:125472097-125472411(+)$1	1	7	47	20.7647

#PSSM
f : 0.28	c : 0.28	g : 0.14	! : 0.14	d : 0.14	
" : 0.28	[ : 0.14	! : 0.14	d : 0.14	b : 0.14	c : 0.14	
" : 0.42	a : 0.14	i : 0.14	d : 0.14	b : 0.14	
" : 0.42	e : 0.14	i : 0.14	d : 0.14	[ : 0.14	
i : 0.28	e : 0.14	c : 0.14	b : 0.14	g : 0.14	" : 0.14	
i : 0.28	e : 0.14	c : 0.14	b : 0.14	g : 0.14	h : 0.14	
i : 0.28	g : 0.28	e : 0.14	c : 0.14	h : 0.14	
i : 0.28	g : 0.28	e : 0.14	" : 0.14	h : 0.14	
" : 0.28	i : 0.28	g : 0.28	h : 0.14	
" : 0.28	i : 0.28	g : 0.28	h : 0.14	
i : 0.28	g : 0.28	" : 0.14	a : 0.14	h : 0.14	
[ : 0.28	c : 0.14	! : 0.14	i : 0.14	g : 0.14	h : 0.14	
c : 0.28	h : 0.28	! : 0.14	i : 0.14	g : 0.14	
c : 0.42	[ : 0.42	h : 0.14	
c : 0.57	[ : 0.14	h : 0.14	d : 0.14	
c : 0.57	h : 0.14	d : 0.14	[ : 0.14	
c : 0.42	o : 0.14	h : 0.14	d : 0.14	a : 0.14	
c : 0.14	o : 0.14	m : 0.14	h : 0.14	d : 0.14	l : 0.14	n : 0.14	
m : 0.28	l : 0.28	o : 0.14	h : 0.14	n : 0.14	
m : 0.28	l : 0.28	o : 0.14	h : 0.14	n : 0.14	
m : 0.28	l : 0.28	o : 0.14	a : 0.14	n : 0.14	
m : 0.14	o : 0.14	c : 0.14	l : 0.14	d : 0.14	] : 0.14	n : 0.14	
c : 0.71	l : 0.14	d : 0.14	
c : 0.71	h : 0.14	d : 0.14	
c : 0.57	i : 0.14	h : 0.14	d : 0.14	
] : 0.57	i : 0.14	h : 0.14	g : 0.14	
i : 0.28	h : 0.28	g : 0.28	c : 0.14	
i : 0.28	h : 0.28	g : 0.28	c : 0.14	
i : 0.28	h : 0.28	g : 0.28	c : 0.14	
i : 0.28	h : 0.28	g : 0.28	e : 0.14	
i : 0.28	h : 0.28	g : 0.28	e : 0.14	
i : 0.28	g : 0.28	e : 0.14	] : 0.14	h : 0.14	
i : 0.28	e : 0.14	a : 0.14	] : 0.14	g : 0.14	h : 0.14	
4 : 0.28	e : 0.14	i : 0.14	b : 0.14	] : 0.14	h : 0.14	
4 : 0.28	b : 0.28	] : 0.14	i : 0.14	3 : 0.14	
4 : 0.28	3 : 0.28	a : 0.14	2 : 0.14	b : 0.14	
4 : 0.28	3 : 0.28	] : 0.14	2 : 0.14	7 : 0.14	
g : 0.28	c : 0.28	d : 0.14	3 : 0.14	7 : 0.14	
c : 0.42	g : 0.28	d : 0.14	7 : 0.14	
c : 0.42	g : 0.28	d : 0.14	7 : 0.14	

#score	129.70786952324286
#seq	7
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_CDS_m1_run2.txt

#BEAR
[cccuuuuuuuuuuuucccdd	chr17:57762931-57763159(+)$1	228	154	175	22.0700
!dddduuuuuuuuuuuudddd	chr8:17823778-17824062(+)$1	284	138	159	22.5039
[cccwwwwwwwwwwwwwwccc	chr5:31493225-31493501(-)$1	276	207	228	20.7344
gggguuuuuuuuuuuuggggg	chr17:57721668-57721908(+)$1	240	4	25	21.7372
ffffftttttttttttfffff	chr21:34925652-34925918(+)$1	266	42	63	21.2542
hhhhhwwwwwwwwwwwwwwhh	chr8:48805813-48806040(-)$1	227	140	161	19.2479
gggggtttttttttttggggg	chr1:19494446-19494692(-)$1	246	95	116	22.1332
f[cccyyyyyyyyyyyyyyyy	chr10:71154607-71154864(+)$1	257	134	155	19.8528
eeeeettttttttttteeeee	chrX:53658426-53658640(-)$1	214	56	77	22.7880
gggggtttttttttttggggg	chr21:34924307-34924589(+)$1	282	25	46	22.1332
[dddduuuuuuuuuuuudddd	chr2:242174804-242175107(-)$1	303	126	147	22.5193
eeeeeuuuuuuuuuuuueeee	chr16:30081076-30081307(+)$1	231	111	132	22.9571
hhhhhttttttttttthhhhh	chr15:90991708-90991995(+)$1	287	134	155	20.5175
[ddddwwwwwwwwwwwwwwdd	chr9:95025191-95025434(-)$1	243	24	45	20.4524
eeeeevvvvvvvvvvvvveee	chr1:19483174-19483432(-)$1	258	31	52	22.1205
eeeeettttttttttteeeee	chr8:48734177-48734414(-)$1	237	211	232	22.7880
##bbuuuuuuuuuuuubb333	chrX:53610472-53610736(-)$1	264	21	42	20.8859
dddduuuuuuuuuuuudddd]	chr9:95033167-95033431(-)$1	264	232	253	21.6394
!cccvvvvvvvvvvvvvccc2	chrX:153582447-153582693(-)$1	246	145	166	21.8692
dddbbyyyyyyyyyyyyyyyy	chrX:39931682-39931943(-)$1	261	1	22	19.4483
eeeeeuuuuuuuuuuuueeee	chr17:38547737-38547978(-)$1	241	159	180	22.9571
ddddwwwwwwwwwwwwwwddd	chr2:183826875-183827106(-)$1	231	53	74	20.4518
eeeeeuuuuuuuuuuuueeee	chr9:432124-432425(+)$1	301	198	219	22.9571
dddbbtttttttttttbb]dd	chr10:120832394-120832608(-)$1	214	54	75	21.4896
"ddddtttttttttttdddd5	chr5:176683926-176684252(+)$1	326	150	171	21.4108
ffffuuuuuuuuuuuufffff	chr1:19444288-19444504(-)$1	216	79	100	20.8984
[ddddtttttttttttdddd3	chr5:71493918-71494209(+)$1	291	44	65	22.4473
eeeeettttttttttteeeee	chr11:62297569-62297823(-)$1	254	69	90	22.7880
hhhhhttttttttttthhhhh	chr1:19505532-19505760(-)$1	228	190	211	20.5175
[a[avvvvvvvvvvvvva]a=	chr7:128485109-128485406(+)$1	297	162	183	21.8705
g[cccyyyyyyyyyyyyyyyy	chr10:120828894-120829152(-)$1	258	58	79	19.9800
ffcccuuuuuuuuuuuuccc3	chr2:96957424-96957664(-)$1	240	192	213	22.3831
eeeeeyyyyyyyyyyyyyyyy	chr8:48800036-48800257(-)$1	221	141	162	20.1413
eeeeeuuuuuuuuuuuueeee	chrX:153587524-153587787(-)$1	263	70	91	22.9571
:ddddtttttttttttdddd:	chr1:19499451-19499687(-)$1	236	56	77	20.1365
!!ccctttttttttttccc]e	chrX:153581693-153581911(-)$1	218	89	110	22.7169
hhhhhvvvvvvvvvvvvvhhh	chr12:116445145-116445456(-)$1	311	159	180	20.3930
eeeeettttttttttteeeee	chr16:2813412-2813652(+)$1	240	116	137	22.7880
eeeeettttttttttteeeee	chr22:23630183-23630460(+)$1	277	251	272	22.7880
[ddddtttttttttttddddc	chr22:23603057-23603342(+)$1	285	59	80	22.3346
eeewwwwwwwwwwwwwweeee	chrX:153588608-153588847(-)$1	239	80	101	20.6758
ffffftttttttttttfffff	chrX:53622168-53622407(-)$1	239	33	54	21.2542
ff[avvvvvvvvvvvvva]ff	chr11:62300363-62300632(-)$1	269	62	83	21.3582
!!ccctttttttttttccc]c	chr17:57759608-57759872(+)$1	264	109	130	22.6189
h!!bbuuuuuuuuuuuubb22	chr17:26955331-26955623(-)$1	292	147	168	21.4557
gggguuuuuuuuuuuuggggg	chrX:153585786-153586009(-)$1	223	113	134	21.7372
eeeeettttttttttteeeee	chrX:39933839-39934134(-)$1	295	239	260	22.7880
=====ttttttttttt=====	chr3:36874411-36874686(-)$1	275	218	239	22.2050
eeeeettttttttttteeeee	chr8:48792080-48792306(-)$1	226	183	204	22.7880
eeewwwwwwwwwwwwwweeee	chr9:35710693-35710918(-)$1	225	73	94	20.6758
"ddddtttttttttttdddd3	chr11:62288119-62288405(-)$1	286	53	74	22.2859
ffffuuuuuuuuuuuufffff	chr1:19439094-19439349(-)$1	255	14	35	20.8984
gggggtttttttttttggggg	chr12:1006612-1006885(+)$1	273	13	34	22.1332
eeeeeuuuuuuuuuuuueeee	chr8:48845587-48845821(-)$1	234	60	81	22.9571
!!bbvvvvvvvvvvvvvbb22	chrX:41055499-41055712(+)$1	213	87	108	20.9253
eeeeeuuuuuuuuuuuueeee	chr21:34926325-34926607(+)$1	282	245	266	22.9571
"""bbuuuuuuuuuuuubb44	chr15:50904715-50905050(-)$1	335	237	258	21.4795
ddddwwwwwwwwwwwwwwddd	chr17:26960812-26961052(-)$1	240	87	108	20.4518
!ddddwwwwwwwwwwwwwwdd	chr1:33137951-33138213(+)$1	262	183	204	20.4370
cc[bbwwwwwwwwwwwwwwbb	chrX:53595573-53595804(-)$1	231	124	145	19.2465
d!!bbuuuuuuuuuuuubb22	chr11:62291052-62291305(-)$1	253	54	75	21.4632

#otherMatches

#Seq PSSM
GUCCUAGAAACUGCAUGGAGG	chr17:57762931-57763159(+)$1	228	154	175	22.0700
CUUCAUAAUGCACCAGUUGAA	chr8:17823778-17824062(+)$1	284	138	159	22.5039
CUGCUUUUCUCUUUCCUUGUA	chr5:31493225-31493501(-)$1	276	207	228	20.7344
UUCAGUACCCUGACUAUGGAG	chr17:57721668-57721908(+)$1	240	4	25	21.7372
UUCGGUUGUGACUGUCCCGGA	chr21:34925652-34925918(+)$1	266	42	63	21.2542
GGUGUCUCUUUUCUCAUCAAC	chr8:48805813-48806040(-)$1	227	140	161	19.2479
AGCCAAAGUCUGCCCCUGGCU	chr1:19494446-19494692(-)$1	246	95	116	22.1332
AAUCGUCCGCAACAUCUUAAU	chr10:71154607-71154864(+)$1	257	134	155	19.8528
UGUCUUUUUUAAUUUUAGACA	chrX:53658426-53658640(-)$1	214	56	77	22.7880
UGACCCCUAUAGAUUAGGUCA	chr21:34924307-34924589(+)$1	282	25	46	22.1332
AGGUGCCCUUUGACCUUCACC	chr2:242174804-242175107(-)$1	303	126	147	22.5193
GGCGUCCAUCAACCUCAAUGC	chr16:30081076-30081307(+)$1	231	111	132	22.9571
CAAGGAGAUGCACUGGCCUUG	chr15:90991708-90991995(+)$1	287	134	155	20.5175
AAUAAAUACAGUUUCUUUCUU	chr9:95025191-95025434(-)$1	243	24	45	20.4524
UCUGCACUCCUGAAGCAAGCA	chr1:19483174-19483432(-)$1	258	31	52	22.1205
CCAGACCUAAAUAAAAUCUGG	chr8:48734177-48734414(-)$1	237	211	232	22.7880
UUGCAUGCCACCCUUCGUCUC	chrX:53610472-53610736(-)$1	264	21	42	20.8859
CCAUUCCAUCUUAUUUGUGGU	chr9:95033167-95033431(-)$1	264	232	253	21.6394
ACAUCCGCUAUGACAACAUGC	chrX:153582447-153582693(-)$1	246	145	166	21.8692
GUACCAACAAAGAGAACCUAG	chrX:39931682-39931943(-)$1	261	1	22	19.4483
AACUGAAAUUACAAACCCAGU	chr17:38547737-38547978(-)$1	241	159	180	22.9571
GUACUUUCUUUAUAACUUGUA	chr2:183826875-183827106(-)$1	231	53	74	20.4518
AGGUACACCGAAGCACAUACC	chr9:432124-432425(+)$1	301	198	219	22.9571
GUGCUGUAAGUGGUGAAGACA	chr10:120832394-120832608(-)$1	214	54	75	21.4896
AAGGGCUUCCGGUGCUCCCUC	chr5:176683926-176684252(+)$1	326	150	171	21.4108
UAAGACUGGUUUCUUCCUUAG	chr1:19444288-19444504(-)$1	216	79	100	20.8984
UUGUGCAAACACCUACCACAU	chr5:71493918-71494209(+)$1	291	44	65	22.4473
CACCUGAAGAUGCCCAAGGUG	chr11:62297569-62297823(-)$1	254	69	90	22.7880
CCAGAAUGCCUUAAAGUUUGG	chr1:19505532-19505760(-)$1	228	190	211	20.5175
UGGCGUCAAGGUCUCAGGGCC	chr7:128485109-128485406(+)$1	297	162	183	21.8705
AUGGCAAAUUACUAUAACAAA	chr10:120828894-120829152(-)$1	258	58	79	19.9800
UGGGUUCUCUCAUUCCUACCU	chr2:96957424-96957664(-)$1	240	192	213	22.3831
GGAGGACUGGUAGGAAAAACG	chr8:48800036-48800257(-)$1	221	141	162	20.1413
GUCCUGCAUGGAUAACAAGGA	chrX:153587524-153587787(-)$1	263	70	91	22.9571
AUAGCCCAUUGCCACAGCUAA	chr1:19499451-19499687(-)$1	236	56	77	20.1365
ACGACUCCAUGCGUAUGUCCC	chrX:153581693-153581911(-)$1	218	89	110	22.7169
AGAUGGUGACAUAAAAUACAU	chr12:116445145-116445456(-)$1	311	159	180	20.3930
GGCCCAAACUCCACCGGGGCC	chr16:2813412-2813652(+)$1	240	116	137	22.7880
CCUUCUUUUUUAUUUCGAGGG	chr22:23630183-23630460(+)$1	277	251	272	22.7880
UCUGUCUAUUUCUCCUGCAGA	chr22:23603057-23603342(+)$1	285	59	80	22.3346
GGACUACAACAUCAACAUCCU	chrX:153588608-153588847(-)$1	239	80	101	20.6758
CUGGGUUUCAGCUUCCUCCAG	chrX:53622168-53622407(-)$1	239	33	54	21.2542
CUGUAUCAGGUGCAAAGGGAG	chr11:62300363-62300632(-)$1	269	62	83	21.3582
CUGGCUAAAACAAACCGCCUU	chr17:57759608-57759872(+)$1	264	109	130	22.6189
UGGGUUAUAUGAUGGGUACAA	chr17:26955331-26955623(-)$1	292	147	168	21.4557
CAUCCUCAUCAAGUACGGUGG	chrX:153585786-153586009(-)$1	223	113	134	21.7372
CUCCAGUCUGCACCAAUGGGG	chrX:39933839-39934134(-)$1	295	239	260	22.7880
GGAUGAAAACUGUGAACAUUU	chr3:36874411-36874686(-)$1	275	218	239	22.2050
UUCCCCAUGCAGUCCAGGGAA	chr8:48792080-48792306(-)$1	226	183	204	22.7880
CAAUGACAUGUCCUACUUUGG	chr9:35710693-35710918(-)$1	225	73	94	20.6758
CAUUUCAAAAGCCCACAAAUC	chr11:62288119-62288405(-)$1	286	53	74	22.2859
GUUGGAAUAUGACCUACAGCA	chr1:19439094-19439349(-)$1	255	14	35	20.8984
GUUUGGUUAUCUUUCACAGAC	chr12:1006612-1006885(+)$1	273	13	34	22.1332
UGAAGUUUAUUGUUUUUCUUU	chr8:48845587-48845821(-)$1	234	60	81	22.9571
UUACUCUACUCUUUACUGUUU	chrX:41055499-41055712(+)$1	213	87	108	20.9253
UACAGAAGAACCAUUACCUGU	chr21:34926325-34926607(+)$1	282	245	266	22.9571
AUGGCAUAUGAAGCAAAGCAG	chr15:50904715-50905050(-)$1	335	237	258	21.4795
CGUGGCAGUGGAGAGGAACAU	chr17:26960812-26961052(-)$1	240	87	108	20.4518
UUGUAUUCAUUCCUCUCUCUA	chr1:33137951-33138213(+)$1	262	183	204	20.4370
AGAGUACCUCACAGCUUAGAC	chrX:53595573-53595804(-)$1	231	124	145	19.2465
UGACAUUGACUUAAACUUGAA	chr11:62291052-62291305(-)$1	253	54	75	21.4632

#DB
.(((............)))))	chr17:57762931-57763159(+)$1	1	154	175	22.0700
.((((............))))	chr8:17823778-17824062(+)$1	1	138	159	22.5039
.(((..............)))	chr5:31493225-31493501(-)$1	1	207	228	20.7344
((((............)))))	chr17:57721668-57721908(+)$1	1	4	25	21.7372
(((((...........)))))	chr21:34925652-34925918(+)$1	1	42	63	21.2542
(((((..............))	chr8:48805813-48806040(-)$1	1	140	161	19.2479
(((((...........)))))	chr1:19494446-19494692(-)$1	1	95	116	22.1332
(.(((................	chr10:71154607-71154864(+)$1	1	134	155	19.8528
(((((...........)))))	chrX:53658426-53658640(-)$1	1	56	77	22.7880
(((((...........)))))	chr21:34924307-34924589(+)$1	1	25	46	22.1332
.((((............))))	chr2:242174804-242175107(-)$1	1	126	147	22.5193
(((((............))))	chr16:30081076-30081307(+)$1	1	111	132	22.9571
(((((...........)))))	chr15:90991708-90991995(+)$1	1	134	155	20.5175
.((((..............))	chr9:95025191-95025434(-)$1	1	24	45	20.4524
(((((.............)))	chr1:19483174-19483432(-)$1	1	31	52	22.1205
(((((...........)))))	chr8:48734177-48734414(-)$1	1	211	232	22.7880
..((............))...	chrX:53610472-53610736(-)$1	1	21	42	20.8859
((((............)))).	chr9:95033167-95033431(-)$1	1	232	253	21.6394
.(((.............))).	chrX:153582447-153582693(-)$1	1	145	166	21.8692
(((((................	chrX:39931682-39931943(-)$1	1	1	22	19.4483
(((((............))))	chr17:38547737-38547978(-)$1	1	159	180	22.9571
((((..............)))	chr2:183826875-183827106(-)$1	1	53	74	20.4518
(((((............))))	chr9:432124-432425(+)$1	1	198	219	22.9571
(((((...........)).))	chr10:120832394-120832608(-)$1	1	54	75	21.4896
.((((...........)))).	chr5:176683926-176684252(+)$1	1	150	171	21.4108
((((............)))))	chr1:19444288-19444504(-)$1	1	79	100	20.8984
.((((...........)))).	chr5:71493918-71494209(+)$1	1	44	65	22.4473
(((((...........)))))	chr11:62297569-62297823(-)$1	1	69	90	22.7880
(((((...........)))))	chr1:19505532-19505760(-)$1	1	190	211	20.5175
.(.(.............).))	chr7:128485109-128485406(+)$1	1	162	183	21.8705
(.(((................	chr10:120828894-120829152(-)$1	1	58	79	19.9800
(((((............))).	chr2:96957424-96957664(-)$1	1	192	213	22.3831
(((((................	chr8:48800036-48800257(-)$1	1	141	162	20.1413
(((((............))))	chrX:153587524-153587787(-)$1	1	70	91	22.9571
.((((...........)))).	chr1:19499451-19499687(-)$1	1	56	77	20.1365
..(((...........))).)	chrX:153581693-153581911(-)$1	1	89	110	22.7169
(((((.............)))	chr12:116445145-116445456(-)$1	1	159	180	20.3930
(((((...........)))))	chr16:2813412-2813652(+)$1	1	116	137	22.7880
(((((...........)))))	chr22:23630183-23630460(+)$1	1	251	272	22.7880
.((((...........)))))	chr22:23603057-23603342(+)$1	1	59	80	22.3346
(((..............))))	chrX:153588608-153588847(-)$1	1	80	101	20.6758
(((((...........)))))	chrX:53622168-53622407(-)$1	1	33	54	21.2542
((.(.............).))	chr11:62300363-62300632(-)$1	1	62	83	21.3582
..(((...........))).)	chr17:57759608-57759872(+)$1	1	109	130	22.6189
(..((............))..	chr17:26955331-26955623(-)$1	1	147	168	21.4557
((((............)))))	chrX:153585786-153586009(-)$1	1	113	134	21.7372
(((((...........)))))	chrX:39933839-39934134(-)$1	1	239	260	22.7880
(((((...........)))))	chr3:36874411-36874686(-)$1	1	218	239	22.2050
(((((...........)))))	chr8:48792080-48792306(-)$1	1	183	204	22.7880
(((..............))))	chr9:35710693-35710918(-)$1	1	73	94	20.6758
.((((...........)))).	chr11:62288119-62288405(-)$1	1	53	74	22.2859
((((............)))))	chr1:19439094-19439349(-)$1	1	14	35	20.8984
(((((...........)))))	chr12:1006612-1006885(+)$1	1	13	34	22.1332
(((((............))))	chr8:48845587-48845821(-)$1	1	60	81	22.9571
..((.............))..	chrX:41055499-41055712(+)$1	1	87	108	20.9253
(((((............))))	chr21:34926325-34926607(+)$1	1	245	266	22.9571
...((............))..	chr15:50904715-50905050(-)$1	1	237	258	21.4795
((((..............)))	chr17:26960812-26961052(-)$1	1	87	108	20.4518
.((((..............))	chr1:33137951-33138213(+)$1	1	183	204	20.4370
((.((..............))	chrX:53595573-53595804(-)$1	1	124	145	19.2465
(..((............))..	chr11:62291052-62291305(-)$1	1	54	75	21.4632

#PSSM
e : 0.27	[ : 0.11	f : 0.11	! : 0.09	g : 0.09	d : 0.09	h : 0.08	" : 0.04	# : 0.01	: : 0.01	= : 0.01	c : 0.01	
e : 0.27	d : 0.22	f : 0.09	g : 0.08	! : 0.08	c : 0.06	h : 0.06	[ : 0.03	# : 0.01	a : 0.01	= : 0.01	" : 0.01	
e : 0.27	d : 0.22	c : 0.13	g : 0.08	f : 0.06	h : 0.06	[ : 0.04	b : 0.03	! : 0.03	= : 0.01	" : 0.01	
e : 0.24	d : 0.19	c : 0.13	b : 0.13	g : 0.08	f : 0.06	h : 0.06	a : 0.03	w : 0.03	= : 0.01	
e : 0.24	d : 0.14	u : 0.11	b : 0.09	w : 0.08	c : 0.08	h : 0.06	v : 0.06	g : 0.04	f : 0.03	= : 0.01	
t : 0.37	u : 0.31	w : 0.14	v : 0.09	y : 0.06	
t : 0.37	u : 0.31	w : 0.14	v : 0.09	y : 0.06	
t : 0.37	u : 0.31	w : 0.14	v : 0.09	y : 0.06	
t : 0.37	u : 0.31	w : 0.14	v : 0.09	y : 0.06	
t : 0.37	u : 0.31	w : 0.14	v : 0.09	y : 0.06	
t : 0.37	u : 0.31	w : 0.14	v : 0.09	y : 0.06	
t : 0.37	u : 0.31	w : 0.14	v : 0.09	y : 0.06	
t : 0.37	u : 0.31	w : 0.14	v : 0.09	y : 0.06	
t : 0.37	u : 0.31	w : 0.14	v : 0.09	y : 0.06	
t : 0.37	u : 0.31	w : 0.14	v : 0.09	y : 0.06	
t : 0.37	u : 0.31	w : 0.14	v : 0.09	y : 0.06	
u : 0.19	w : 0.14	e : 0.11	v : 0.09	d : 0.09	g : 0.08	f : 0.06	y : 0.06	c : 0.04	h : 0.03	b : 0.03	= : 0.01	
e : 0.24	d : 0.13	w : 0.11	b : 0.09	c : 0.08	g : 0.08	f : 0.06	y : 0.06	h : 0.03	v : 0.03	a : 0.03	= : 0.01	
e : 0.26	d : 0.16	c : 0.09	g : 0.08	f : 0.06	w : 0.06	y : 0.06	b : 0.06	h : 0.04	] : 0.04	3 : 0.01	= : 0.01	
e : 0.26	d : 0.22	g : 0.08	f : 0.08	h : 0.06	y : 0.06	c : 0.04	2 : 0.04	] : 0.03	3 : 0.01	a : 0.01	= : 0.01	4 : 0.01	b : 0.01	
e : 0.27	d : 0.13	g : 0.08	f : 0.08	h : 0.06	y : 0.06	3 : 0.06	2 : 0.06	c : 0.04	= : 0.03	] : 0.01	5 : 0.01	: : 0.01	4 : 0.01	b : 0.01	

#score	1316.8535239969135
#seq	61
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_CDS_m1_run2.txt

#BEAR
d[a[bbuuuuuuuuuuuubb]a]d	chr8:94748331-94748603(-)$1	272	127	151	23.2938
eeeeevvvvvvvvvvvvveeeeeH	chr6:87970528-87970780(+)$1	252	42	66	21.7096
eeeeewwwwwwwwwwwwwweeeee	chr15:40915824-40916130(+)$1	306	165	189	22.0215
e"""bbuuuuuuuuuuuubb]eee	chr15:40916206-40916472(+)$1	266	23	47	23.1060
ggggggvvvvvvvvvvvvvggggg	chr11:62285711-62285983(-)$1	272	43	67	23.5544
FFeeeeettttttttttteeeeeb	chr5:180278028-180278349(-)$1	321	169	193	20.8031
[bb[ccctttttttttttcccbbb	chr8:94747762-94748025(-)$1	263	189	213	21.7137
&&dddduuuuuuuuuuuudddd33	chr11:62297161-62297432(-)$1	271	217	241	21.5460
eeeeewwwwwwwwwwwwwweeeee	chr11:5443515-5443781(-)$1	266	149	173	22.0215
gggggggtttttttttttgggggg	chr1:39800072-39800355(+)$1	283	80	104	22.5331
eeeebbuuuuuuuuuuuubb]eee	chr6:87967056-87967333(+)$1	277	106	130	23.1221
iiiiiwwwwwwwwwwwwwwiiiii	chr1:214818463-214818805(+)$1	342	264	288	22.8605
[bbcccuuuuuuuuuuuuccc]bb	chr7:128455669-128455986(+)$1	317	27	51	23.0374
ffffffuuuuuuuuuuuuffffff	chr1:197071225-197071461(-)$1	236	37	61	22.8981
c"""ccctttttttttttccc444	chr11:62292324-62292588(-)$1	264	90	114	22.4733
gggggguuuuuuuuuuuugggggg	chr2:109086566-109086892(+)$1	326	283	307	24.1172
ddd[ccctttttttttttccc]dd	chr4:2330640-2330998(-)$1	358	189	213	22.0907
iiiyyyyyyyyyyyyyyyyiiiii	chr7:152345943-152346213(-)$1	270	220	244	22.1031
ffffffvvvvvvvvvvvvvfffff	chr8:30705794-30706045(-)$1	251	121	145	22.3636
fffffftttttttttttffffff3	chr4:435963-436286(-)$1	323	33	57	21.5373
ggdddduuuuuuuuuuuudddd]g	chr1:46073068-46073296(+)$1	228	174	198	22.9047
=====wwwwwwwwwwwwww=====	chr11:62300882-62301180(-)$1	298	87	111	23.0020
fff[bbuuuuuuuuuuuubbffff	chr2:55252967-55253226(-)$1	259	27	51	23.1670
ffffffuuuuuuuuuuuuffffff	chr2:109380719-109380967(+)$1	248	95	119	22.8981
ceeeeeuuuuuuuuuuuueeeee2	chr8:30701784-30702089(-)$1	305	69	93	23.0651
hhh[bbuuuuuuuuuuuubb]hhh	chr4:13603226-13603558(-)$1	332	34	58	22.6268
""ddddtttttttttttdddd333	chr11:62288123-62288396(-)$1	273	43	67	21.3481
gggg[bbtttttttttttbbgggg	chr3:47163437-47163693(-)$1	256	30	54	22.4670
ccc[bbwwwwwwwwwwwwwwbb33	chr17:41245941-41246199(-)$1	258	142	166	21.9104
[a[cccuuuuuuuuuuuuccc]ac	chr1:39876626-39876941(+)$1	315	241	265	23.9746
cc[cccuuuuuuuuuuuuccc22c	chr13:23909901-23910175(-)$1	274	87	111	23.6282
!!cccxxxxxxxxxxxxxxxccc2	chr19:52376784-52377070(-)$1	286	129	153	18.5746
gggggggtttttttttttgggggg	chr1:214818804-214819049(+)$1	245	134	158	22.5331
e[bbyyyyyyyyyyyyyyyybb]e	chr17:41245419-41245721(-)$1	302	58	82	21.0597
f[cccyyyyyyyyyyyyyyyyccc	chr2:201435919-201436213(+)$1	294	33	57	21.9065
ggggyyyyyyyyyyyyyyyygggg	chr13:23911897-23912235(-)$1	338	22	46	22.6523
ggggggvvvvvvvvvvvvvggggg	chr11:62285870-62286126(-)$1	256	186	210	23.5544
eeeeevvvvvvvvvvvvveeeee:	chr6:4032192-4032458(+)$1	266	7	31	21.4384
ddddyyyyyyyyyyyyyyyydddd	chr3:47953256-47953503(-)$1	247	80	104	20.9422
ggggggvvvvvvvvvvvvvggggg	chr8:30705045-30705308(-)$1	263	220	244	23.5544
ffffffuuuuuuuuuuuuffffff	chr1:39800992-39801272(+)$1	280	249	273	22.8981
ccc[bbwwwwwwwwwwwwwwbb33	chr17:41246004-41246276(-)$1	272	219	243	21.9104
GGdddduuuuuuuuuuuudddd::	chr22:22869717-22870019(-)$1	302	41	65	19.8814
ggggggvvvvvvvvvvvvvggggg	chr18:9257164-9257426(+)$1	262	200	224	23.5544
:cccyyyyyyyyyyyyyyyyccc:	chr3:47163771-47164010(-)$1	239	94	118	20.2614
bb[ccctttttttttttccc]bb4	chr3:37367775-37368027(+)$1	252	138	162	21.6458
ccc[bbtttttttttttbb]ccc4	chr14:75265750-75266064(+)$1	314	143	167	21.8904
d[a[bbuuuuuuuuuuuubb]a]d	chr8:94748278-94748531(-)$1	253	55	79	23.2938
:eeeeeuuuuuuuuuuuueeeee:	chr4:437811-438059(-)$1	248	16	40	21.3314
###cccwwwwwwwwwwwwwwccc5	chr2:152320574-152320853(+)$1	279	208	232	21.4912
gg[ccctttttttttttccc]ggg	chr8:94745783-94746027(-)$1	244	128	152	22.9378
"eeeeettttttttttteeeee44	chr18:9258480-9258777(+)$1	297	201	225	21.5558
ffff[auuuuuuuuuuuua]ffff	chr8:30704754-30705012(-)$1	258	168	192	23.4806
hhhhhwwwwwwwwwwwwwwhhhhh	chr19:40542049-40542340(-)$1	291	48	72	20.9908
bb[cccuuuuuuuuuuuucccbb:	chr11:5443882-5444206(-)$1	324	4	28	22.2269
d[cccwwwwwwwwwwwwwwccc22	chr7:128450308-128450563(+)$1	255	210	234	22.3537
ggggggvvvvvvvvvvvvvggggg	chr1:197070307-197070564(-)$1	257	166	190	23.5544
iiiiiiuuuuuuuuuuuuiiiiii	chr13:23911786-23912097(-)$1	311	174	198	23.9962
gggggwwwwwwwwwwwwwwggggg	chr11:5423935-5424185(-)$1	250	18	42	23.0097
eeeeyyyyyyyyyyyyyyyyeeee	chr3:37368106-37368423(+)$1	317	180	204	21.8404
ddd[ccctttttttttttccc22d	chr3:47952501-47952862(-)$1	361	307	331	21.9152
ggggggvvvvvvvvvvvvvggggg	chr1:91405569-91405824(-)$1	255	58	82	23.5544
gggggguuuuuuuuuuuugggggg	chr4:104062885-104063152(-)$1	267	211	235	24.1172
#eeeeeuuuuuuuuuuuueeeee4	chr1:16255118-16255394(+)$1	276	17	41	23.1394
eee[ccctttttttttttccceee	chr6:64422239-64422514(+)$1	275	97	121	22.6652

#otherMatches

#Seq PSSM
CGUGCCAUAAGUCGUUCAGGAGGG	chr8:94748331-94748603(-)$1	272	127	151	23.2938
GUGCCAUAAAUUAUCUAAGGCAUU	chr6:87970528-87970780(+)$1	252	42	66	21.7096
UCAAGCCACAGAGAAAAUACUUGA	chr15:40915824-40916130(+)$1	306	165	189	22.0215
CAUAGGGAAAGUUGUAGACCAGGC	chr15:40916206-40916472(+)$1	266	23	47	23.1060
GCAUCUGUUCCCAGCAUGAAGGUG	chr11:62285711-62285983(-)$1	272	43	67	23.5544
UAUGCCUAUAGGACAGAGAGGCAG	chr5:180278028-180278349(-)$1	321	169	193	20.8031
CUCAUUCAAAAUCUCCCAGAAGAA	chr8:94747762-94748025(-)$1	263	189	213	21.7137
AGAGGGGAAACUAAAAGGCCCUAA	chr11:62297161-62297432(-)$1	271	217	241	21.5460
GCAUGGAGAGAAACAGAUACAUGC	chr11:5443515-5443781(-)$1	266	149	173	22.0215
AUUAGUCAAGAAAUGUAAGAUUGA	chr1:39800072-39800355(+)$1	283	80	104	22.5331
GUCUCUCUUCCCUUCACCAGCAGA	chr6:87967056-87967333(+)$1	277	106	130	23.1221
AAUGAAAAUAAGCAGAAGGUUAUU	chr1:214818463-214818805(+)$1	342	264	288	22.8605
CAGCCAGAGGAAAUUAGAUGGACU	chr7:128455669-128455986(+)$1	317	27	51	23.0374
GUCAUCAUACAGAAGAUGGAUGAU	chr1:197071225-197071461(-)$1	236	37	61	22.8981
AAAGUGGAUAUUAAUGCCCCAGAU	chr11:62292324-62292588(-)$1	264	90	114	22.4733
AACUUAUAUGAAUAAUCUUAAGUU	chr2:109086566-109086892(+)$1	326	283	307	24.1172
aauauugaaaaacaaaaacaaaau	chr4:2330640-2330998(-)$1	358	189	213	22.0907
GCAACGACACAAACUAUAAUGCAG	chr7:152345943-152346213(-)$1	270	220	244	22.1031
UCUGAUUUAAAAACAAUUUAUCAG	chr8:30705794-30706045(-)$1	251	121	145	22.3636
GUUACAAAUGUGAAGAGUGUGGCA	chr4:435963-436286(-)$1	323	33	57	21.5373
AGGACCGAAUGAAGCUGAGGUCAC	chr1:46073068-46073296(+)$1	228	174	198	22.9047
GACUUGGGUGGCAGAGGAGGGGUC	chr11:62300882-62301180(-)$1	298	87	111	23.0020
AGCCUGAAAAUAUUAAUGCAGCUC	chr2:55252967-55253226(-)$1	259	27	51	23.1670
GAGUUGCCAAAACCAGAACAACUU	chr2:109380719-109380967(+)$1	248	95	119	22.8981
AAAUUAUUACAACUAACUUGAUUG	chr8:30701784-30702089(-)$1	305	69	93	23.0651
UAAGUAGAGACUCAGAAAUAGUUG	chr4:13603226-13603558(-)$1	332	34	58	22.6268
ACAUUUCAAAAGCCCACAAAUCUC	chr11:62288123-62288396(-)$1	273	43	67	21.3481
AAAUAGCUUUAUGAAUGUGCAUUU	chr3:47163437-47163693(-)$1	256	30	54	22.4670
CCUCACAAAUAAAUUAAAGCGUAA	chr17:41245941-41246199(-)$1	258	142	166	21.9104
CUGAGAGAGAAAACAGAGUCUGAG	chr1:39876626-39876941(+)$1	315	241	265	23.9746
GACAUCCUGUGUAUUUUUGAUCCU	chr13:23909901-23910175(-)$1	274	87	111	23.6282
GAAGAUAUGCAGGAAAAGAUUCUG	chr19:52376784-52377070(-)$1	286	129	153	18.5746
UGAAGGAAAAGACGGAACUCCUUC	chr1:214818804-214819049(+)$1	245	134	158	22.5331
AGAAAUCUAAGCCCACCUAAUUGU	chr17:41245419-41245721(-)$1	302	58	82	21.0597
UAGAUAAACAACACAUUUCAAGUC	chr2:201435919-201436213(+)$1	294	33	57	21.9065
UGGGGAGCUAAUGGAUUAUACUUA	chr13:23911897-23912235(-)$1	338	22	46	22.6523
GCAUCUGUUCCCAGCAUGAAGGUG	chr11:62285870-62286126(-)$1	256	186	210	23.5544
UUCAUGAAAAGGCAAGAAAUGGAA	chr6:4032192-4032458(+)$1	266	7	31	21.4384
AACUUGAAAAGGGAAUGUUUAGUU	chr3:47953256-47953503(-)$1	247	80	104	20.9422
UGAGGCUAAAGAGAAUAGUGCUUC	chr8:30705045-30705308(-)$1	263	220	244	23.5544
UUCUGAAGAAAAGUUGUAUCAGGA	chr1:39800992-39801272(+)$1	280	249	273	22.8981
CCUCACAAAUAAAUUAAAGCGUAA	chr17:41246004-41246276(-)$1	272	219	243	21.9104
CUUCAAGCAAAAAGUAAAUUGAAA	chr22:22869717-22870019(-)$1	302	41	65	19.8814
CCAGUUUUGCAACUUCUCCAACUG	chr18:9257164-9257426(+)$1	262	200	224	23.5544
UGCUGCAUAAGAAGUCAGAAAGCC	chr3:47163771-47164010(-)$1	239	94	118	20.2614
GAGUCUAAUUUAGAAACAGAGUUA	chr3:37367775-37368027(+)$1	252	138	162	21.6458
UAUGUAUGAUAGAAGUUUGGAUAA	chr14:75265750-75266064(+)$1	314	143	167	21.8904
CGUGCCAUAAGUCGUUCAGGAGGG	chr8:94748278-94748531(-)$1	253	55	79	23.2938
AUGCUUGUCAAAUACUCAGAGCAA	chr4:437811-438059(-)$1	248	16	40	21.3314
AGAUCAAGAAGAGAAAGUGGUGAA	chr2:152320574-152320853(+)$1	279	208	232	21.4912
GAUCCAAAAAUAAAUUGUGGUUCA	chr8:94745783-94746027(-)$1	244	128	152	22.9378
AAGAGAAAACUCAGCAAUCUCUGG	chr18:9258480-9258777(+)$1	297	201	225	21.5558
AGUGCCGUGAAACAAAAAGAUACU	chr8:30704754-30705012(-)$1	258	168	192	23.4806
UCAUAAUACACAUAAACCAUAUGA	chr19:40542049-40542340(-)$1	291	48	72	20.9908
CCAUGGGAAUGUAGAGGACCAGGA	chr11:5443882-5444206(-)$1	324	4	28	22.2269
UGGCCAGGGGUAAGGAUAAGGCAA	chr7:128450308-128450563(+)$1	255	210	234	22.3537
AACUGCAGUGCGUACCCAAGCAGU	chr1:197070307-197070564(-)$1	257	166	190	23.5544
CUUCGGUAAAAUUAGGAUUUGAAG	chr13:23911786-23912097(-)$1	311	174	198	23.9962
CCAUCAUGGAUAAAGAAUGGAUGG	chr11:5423935-5424185(-)$1	250	18	42	23.0097
UAGCAGAGUUGAAGAGAAAAGCUG	chr3:37368106-37368423(+)$1	317	180	204	21.8404
UGGGGCUGAAUUCUUCAAAGCAAC	chr3:47952501-47952862(-)$1	361	307	331	21.9152
UUCUUUCAAAUACCUUAAAAAAGA	chr1:91405569-91405824(-)$1	255	58	82	23.5544
AUUUAGAAAAUUCAAAUGCUAAAU	chr4:104062885-104063152(-)$1	267	211	235	24.1172
AGAGUGGAGAGAGAGAGACGCUUA	chr1:16255118-16255394(+)$1	276	17	41	23.1394
CUAAUGUAGGAAAAGGAAACAUAG	chr6:64422239-64422514(+)$1	275	97	121	22.6652

#DB
(.(.((............)).).)	chr8:94748331-94748603(-)$1	1	127	151	23.2938
(((((.............)))))(	chr6:87970528-87970780(+)$1	1	42	66	21.7096
(((((..............)))))	chr15:40915824-40916130(+)$1	1	165	189	22.0215
(...((............)).)))	chr15:40916206-40916472(+)$1	1	23	47	23.1060
((((((.............)))))	chr11:62285711-62285983(-)$1	1	43	67	23.5544
(((((((...........)))))(	chr5:180278028-180278349(-)$1	1	169	193	20.8031
.((.(((...........))))))	chr8:94747762-94748025(-)$1	1	189	213	21.7137
..((((............))))..	chr11:62297161-62297432(-)$1	1	217	241	21.5460
(((((..............)))))	chr11:5443515-5443781(-)$1	1	149	173	22.0215
(((((((...........))))))	chr1:39800072-39800355(+)$1	1	80	104	22.5331
((((((............)).)))	chr6:87967056-87967333(+)$1	1	106	130	23.1221
(((((..............)))))	chr1:214818463-214818805(+)$1	1	264	288	22.8605
.(((((............))).))	chr7:128455669-128455986(+)$1	1	27	51	23.0374
((((((............))))))	chr1:197071225-197071461(-)$1	1	37	61	22.8981
(...(((...........)))...	chr11:62292324-62292588(-)$1	1	90	114	22.4733
((((((............))))))	chr2:109086566-109086892(+)$1	1	283	307	24.1172
(((.(((...........))).))	chr4:2330640-2330998(-)$1	1	189	213	22.0907
(((................)))))	chr7:152345943-152346213(-)$1	1	220	244	22.1031
((((((.............)))))	chr8:30705794-30706045(-)$1	1	121	145	22.3636
((((((...........)))))).	chr4:435963-436286(-)$1	1	33	57	21.5373
((((((............)))).)	chr1:46073068-46073296(+)$1	1	174	198	22.9047
(((((..............)))))	chr11:62300882-62301180(-)$1	1	87	111	23.0020
(((.((............))))))	chr2:55252967-55253226(-)$1	1	27	51	23.1670
((((((............))))))	chr2:109380719-109380967(+)$1	1	95	119	22.8981
((((((............))))).	chr8:30701784-30702089(-)$1	1	69	93	23.0651
(((.((............)).)))	chr4:13603226-13603558(-)$1	1	34	58	22.6268
..((((...........))))...	chr11:62288123-62288396(-)$1	1	43	67	21.3481
((((.((...........))))))	chr3:47163437-47163693(-)$1	1	30	54	22.4670
(((.((..............))..	chr17:41245941-41246199(-)$1	1	142	166	21.9104
.(.(((............))).))	chr1:39876626-39876941(+)$1	1	241	265	23.9746
((.(((............)))..)	chr13:23909901-23910175(-)$1	1	87	111	23.6282
..(((...............))).	chr19:52376784-52377070(-)$1	1	129	153	18.5746
(((((((...........))))))	chr1:214818804-214819049(+)$1	1	134	158	22.5331
(.((................)).)	chr17:41245419-41245721(-)$1	1	58	82	21.0597
(.(((................)))	chr2:201435919-201436213(+)$1	1	33	57	21.9065
((((................))))	chr13:23911897-23912235(-)$1	1	22	46	22.6523
((((((.............)))))	chr11:62285870-62286126(-)$1	1	186	210	23.5544
(((((.............))))).	chr6:4032192-4032458(+)$1	1	7	31	21.4384
((((................))))	chr3:47953256-47953503(-)$1	1	80	104	20.9422
((((((.............)))))	chr8:30705045-30705308(-)$1	1	220	244	23.5544
((((((............))))))	chr1:39800992-39801272(+)$1	1	249	273	22.8981
(((.((..............))..	chr17:41246004-41246276(-)$1	1	219	243	21.9104
((((((............))))..	chr22:22869717-22870019(-)$1	1	41	65	19.8814
((((((.............)))))	chr18:9257164-9257426(+)$1	1	200	224	23.5544
.(((................))).	chr3:47163771-47164010(-)$1	1	94	118	20.2614
((.(((...........))).)).	chr3:37367775-37368027(+)$1	1	138	162	21.6458
(((.((...........)).))).	chr14:75265750-75266064(+)$1	1	143	167	21.8904
(.(.((............)).).)	chr8:94748278-94748531(-)$1	1	55	79	23.2938
.(((((............))))).	chr4:437811-438059(-)$1	1	16	40	21.3314
...(((..............))).	chr2:152320574-152320853(+)$1	1	208	232	21.4912
((.(((...........))).)))	chr8:94745783-94746027(-)$1	1	128	152	22.9378
.(((((...........)))))..	chr18:9258480-9258777(+)$1	1	201	225	21.5558
((((.(............).))))	chr8:30704754-30705012(-)$1	1	168	192	23.4806
(((((..............)))))	chr19:40542049-40542340(-)$1	1	48	72	20.9908
((.(((............))))).	chr11:5443882-5444206(-)$1	1	4	28	22.2269
(.(((..............)))..	chr7:128450308-128450563(+)$1	1	210	234	22.3537
((((((.............)))))	chr1:197070307-197070564(-)$1	1	166	190	23.5544
((((((............))))))	chr13:23911786-23912097(-)$1	1	174	198	23.9962
(((((..............)))))	chr11:5423935-5424185(-)$1	1	18	42	23.0097
((((................))))	chr3:37368106-37368423(+)$1	1	180	204	21.8404
(((.(((...........)))..)	chr3:47952501-47952862(-)$1	1	307	331	21.9152
((((((.............)))))	chr1:91405569-91405824(-)$1	1	58	82	23.5544
((((((............))))))	chr4:104062885-104063152(-)$1	1	211	235	24.1172
.(((((............))))).	chr1:16255118-16255394(+)$1	1	17	41	23.1394
(((.(((...........))))))	chr6:64422239-64422514(+)$1	1	97	121	22.6652

#PSSM
g : 0.23	e : 0.13	f : 0.12	d : 0.09	c : 0.09	[ : 0.04	i : 0.04	h : 0.03	" : 0.03	: : 0.03	b : 0.03	# : 0.03	F : 0.01	& : 0.01	= : 0.01	! : 0.01	G : 0.01	
g : 0.23	e : 0.16	f : 0.10	[ : 0.07	c : 0.07	b : 0.06	" : 0.04	i : 0.04	d : 0.04	h : 0.03	F : 0.01	& : 0.01	= : 0.01	a : 0.01	! : 0.01	G : 0.01	# : 0.01	
g : 0.20	e : 0.18	d : 0.10	f : 0.10	c : 0.10	[ : 0.07	b : 0.04	i : 0.04	a : 0.03	" : 0.03	h : 0.03	= : 0.01	# : 0.01	
g : 0.20	[ : 0.16	e : 0.16	c : 0.16	f : 0.09	d : 0.07	" : 0.03	i : 0.03	y : 0.01	= : 0.01	b : 0.01	h : 0.01	
c : 0.23	g : 0.16	b : 0.13	e : 0.13	y : 0.09	f : 0.07	d : 0.06	i : 0.03	[ : 0.03	= : 0.01	h : 0.01	
c : 0.18	b : 0.15	g : 0.15	w : 0.10	y : 0.10	e : 0.07	f : 0.07	d : 0.06	v : 0.03	x : 0.01	a : 0.01	i : 0.01	
u : 0.35	w : 0.15	v : 0.13	y : 0.10	t : 0.09	c : 0.07	g : 0.03	e : 0.01	b : 0.01	x : 0.01	
u : 0.35	t : 0.23	w : 0.15	v : 0.13	y : 0.10	x : 0.01	
u : 0.35	t : 0.23	w : 0.15	v : 0.13	y : 0.10	x : 0.01	
u : 0.35	t : 0.23	w : 0.15	v : 0.13	y : 0.10	x : 0.01	
u : 0.35	t : 0.23	w : 0.15	v : 0.13	y : 0.10	x : 0.01	
u : 0.35	t : 0.23	w : 0.15	v : 0.13	y : 0.10	x : 0.01	
u : 0.35	t : 0.23	w : 0.15	v : 0.13	y : 0.10	x : 0.01	
u : 0.35	t : 0.23	w : 0.15	v : 0.13	y : 0.10	x : 0.01	
u : 0.35	t : 0.23	w : 0.15	v : 0.13	y : 0.10	x : 0.01	
u : 0.35	t : 0.23	w : 0.15	v : 0.13	y : 0.10	x : 0.01	
u : 0.35	t : 0.23	w : 0.15	v : 0.13	y : 0.10	x : 0.01	
u : 0.35	w : 0.15	v : 0.13	t : 0.13	y : 0.10	c : 0.03	f : 0.01	d : 0.01	x : 0.01	b : 0.01	e : 0.01	
c : 0.16	w : 0.15	b : 0.12	e : 0.10	v : 0.10	y : 0.10	d : 0.06	g : 0.06	f : 0.06	x : 0.01	a : 0.01	i : 0.01	
c : 0.18	g : 0.16	e : 0.13	b : 0.10	y : 0.09	f : 0.07	d : 0.06	i : 0.04	w : 0.04	] : 0.03	= : 0.01	x : 0.01	h : 0.01	
c : 0.21	g : 0.20	e : 0.15	] : 0.10	f : 0.10	d : 0.07	i : 0.04	b : 0.04	= : 0.01	y : 0.01	h : 0.01	
g : 0.21	e : 0.20	f : 0.10	b : 0.09	c : 0.09	d : 0.06	i : 0.04	] : 0.04	a : 0.03	h : 0.03	2 : 0.03	4 : 0.01	= : 0.01	3 : 0.01	
g : 0.21	e : 0.18	f : 0.10	c : 0.07	] : 0.06	b : 0.06	3 : 0.06	i : 0.04	2 : 0.04	4 : 0.03	d : 0.03	h : 0.03	= : 0.01	a : 0.01	: : 0.01	
g : 0.23	e : 0.10	f : 0.09	d : 0.07	3 : 0.07	4 : 0.07	: : 0.07	b : 0.04	i : 0.04	2 : 0.04	c : 0.04	h : 0.03	H : 0.01	= : 0.01	5 : 0.01	

#score	1455.612136478157
#seq	65
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_UTR_m1_run2.txt

#BEAR
fffff!!dddd!!eeeeeooooooeeeee333dddd22f	chr6:44122803-44123095(+)$1	292	227	266	14.5522
[bb[ccc[iiiiiiiii!!ccclllccc22iiiiiiiii	chr7:5569486-5569711(-)$1	225	165	204	11.5176
ccc[eeeee!!ccccccnnnnnccc]ccc22eeeee]cc	chr17:7815311-7815595(+)$1	284	145	184	11.7218
ccc!!dddd[bb!!ddddoooooodddd22bbdddd444	chr10:70525593-70525890(+)$1	297	85	124	15.9583
ccca[bb[bb[bb[ddddoooooodddd]bb]bb22bb]	chr22:50020587-50020829(-)$1	242	48	87	12.7339
ciiiiiiiii!!a!!ddddnnnnndddd22a]iiiiiii	chr19:1104365-1104610(+)$1	245	188	227	15.1135
hhh[ccc!!===========mmmm===========]ccc	chr19:50879652-50879982(+)$1	330	202	241	12.4128
fff[a!!eeeeeddddbboooooobb333dddd]eeeee	chr19:18478347-18478621(+)$1	274	156	195	12.6494
cccccc!!bb"""ccclllccc4444bb22ccc]ccca]	chr11:62382690-62383044(-)$1	354	190	229	11.4098
============[gggggggmmmmggggggg========	chr1:24791600-24791898(+)$1	298	250	289	11.5922
ddccc[dddd[ddddrrrrrrrrrdddd]dddd]ccc33	chr16:28222600-28222943(-)$1	343	274	313	11.5829
[ffffff[a[a[a!!eeeeellleeeee]a]aa]fffff	chr12:7024272-7024510(+)$1	238	164	203	11.6954
iiiiiii!!bb####cccooooooccc]bb22iiiiiii	chr9:95476117-95476376(-)$1	259	184	223	14.4015
ccc[ccc!!ccc!!ddddoooooodddd22ccc]ccccc	chr22:19957770-19958058(-)$1	288	19	58	18.0104
ddd[ccc[a!!ffffffooooooffffff]accc]dddd	chr19:18547928-18548218(-)$1	290	63	102	12.2378
gbb!!============rrrrrrrrr============]	chr17:75211059-75211363(+)$1	304	88	127	12.6988
dddd[a[ccc[bb[ddddoooooodddd]bb]ccc]add	chr12:133295294-133295553(+)$1	259	153	192	14.0750
:gggggggdddd[addddnnnnndddd]a22dddd]ggg	chr15:91509705-91509957(-)$1	252	66	105	12.5334
eee[a[dddd[a[eeeeennnnneeeeea]dddd]a]ee	chr1:1284343-1284642(-)$1	299	112	151	12.7997
""a[dddd!!gggggggooooooggggggg333dddd]a	chr19:18548018-18548295(-)$1	277	200	239	13.0356
ddeeeee!!ddddeeeeeooooooeeeee]dddd]eeee	chr9:139730723-139730966(+)$1	243	49	88	13.0354
eee!!dddd[bb!!ddddooooooddddbbdddd22eee	chr12:125270542-125270852(-)$1	310	208	247	13.6630
ggggggg!!==========mmmm==========]ggggg	chr14:59655348-59655618(+)$1	270	189	228	13.0625
ggg[eeeee"""a[ddddmmmmdddd]a22eeeee]ggg	chr21:34941914-34942267(+)$1	353	20	59	13.3077
eeeee####dddd[ddddoooooodddd]dddd4444ee	chr3:160153250-160153502(-)$1	252	33	72	14.5260
iiiii[a!!ccc[cccnnnnnccc]ccc22aiiiiiiii	chr20:60709719-60709989(+)$1	270	207	246	12.8797
:bb"""dddd[bb!!cccooooooccc22bbdddd333b	chr19:56166207-56166468(+)$1	261	171	210	13.0523
ba[ffffff$$$$$ddddoooooodddd22ffffff]a]	chr3:100428886-100429178(+)$1	292	60	99	14.6403
fff[ccc$$$$$a[cccrrrrrrrrrccc]a4444ccc]	chr8:145650611-145650879(-)$1	268	44	83	12.0237
eeeeeccc$$$$$a!!bboooooobb22a]ccc]eeeee	chr8:144917313-144917620(-)$1	307	225	264	12.3883
ccc[ccc!!dddd[cccooooooccc]dddd22ccc22c	chrX:151123176-151123419(-)$1	243	102	141	13.1080
gggggg[bb!!ggggggglllggggggg22bbggggggg	chr20:62330511-62330757(-)$1	246	196	235	11.9085
ffff"""ccc[ccc[ccclllccc]ccc22ccc333fff	chr1:36787722-36787988(+)$1	266	24	63	13.3813
ggga!!dddd$$$$$ccclllcccdddd22a]ggggggg	chr11:65374340-65374656(-)$1	316	148	187	13.7417
fffff[ffffff[cccddddmmmmdddd22ccc]fffff	chr11:67810671-67810971(+)$1	300	166	205	11.2562
ccc[dddd####eeeeeooooooeeeee22ddddccc]b	chr8:145011298-145011633(-)$1	335	26	65	15.2402
iiiiiiccc####eeeeellleeeee4444ccc]iiiii	chr12:7024339-7024592(+)$1	253	85	124	13.7243
pffffffdddd"""ddddoooooodddd333dddddddd	chrX:153178614-153178873(-)$1	259	117	156	14.8063
==========!!ddddqqqqqqqqdddd333========	chr9:35756863-35757157(+)$1	294	7	46	13.0283
ccc[bb[dddd[eeeeeooooooeeeee]dddd]bb]cc	chr3:9862058-9862337(+)$1	279	78	117	13.1788
d"""dddddddd"""ddddmmmmdddd4444dddd333d	chr4:174253122-174253329(-)$1	207	146	185	12.1786
eeebb[ccc$$$$$ddddooooooddddccc]bb]eeee	chr20:32264104-32264414(-)$1	310	152	191	13.4437
ffff"""ccc[ccc[ccclllccc]ccc22ccc333fff	chr1:36787596-36787852(+)$1	256	150	189	13.3813
ccc!!a[dddd[eeeeecccmmmmccc333eeeee]ddd	chr22:20073374-20073640(+)$1	266	153	192	11.3946
##a[==========ddddnnnnndddd]==========]	chr16:8951865-8952135(-)$1	270	141	180	14.5830
ccc::eeeeeddddddddoooooodddd22dddd22eee	chr10:103586152-103586453(-)$1	301	184	223	12.6227
""eeeee"""ccc[cccnnnnncccccc333eeeee333	chr17:72858706-72858982(-)$1	276	155	194	12.8334
:::ccc[ccc[cccddddoooooodddd]cccccc]ccc	chr6:49572943-49573199(-)$1	256	136	175	12.5865
=[ccc[bb"""a[ddddoooooodddd]a22bb]ccc==	chr2:242447752-242448020(-)$1	268	117	156	15.3885
dd####dddd"""eeeeeooooooeeeee333dddd22d	chr19:50815919-50816230(-)$1	311	43	82	14.7801
iiiiiii"""ffffffooooooffffff333iiiiiiii	chr2:8869036-8869307(-)$1	271	179	218	13.4175
ccc[ccc[ccc!!eeeeennnnneeeee22ccc]ccccc	chr1:36789250-36789517(+)$1	267	76	115	14.7198
ffffff"""ccc!!eeeeemmmmeeeee22cccffffff	chr20:49201075-49201355(+)$1	280	212	251	12.3325
###bb[ffffff!!a[bboooooobb]a22ffffff]bb	chr19:49605880-49606161(+)$1	281	82	121	11.6408
ggggggg!!ccc[ddddnnnnnddddccc]ggggggg]c	chr8:102217322-102217663(-)$1	341	247	286	12.7167

#otherMatches

#Seq PSSM
CUGGGAUCUGGCCCUCCAGGGAAGUGGAGCCUCCAGCCC	chr6:44122803-44123095(+)$1	292	227	266	14.5522
GCUGUUUGAACCGGGCGGAGGCGGGGCUGGCGCCCGGUU	chr7:5569486-5569711(-)$1	225	165	204	11.5176
GUUAUGAGGGAGGAAGUCAACUGCUGUUCAGCCUCAGAA	chr17:7815311-7815595(+)$1	284	145	184	11.7218
GCCAGCGUCGAGAAAGAAGAUAUAUUUUGCCUGAUGAAC	chr10:70525593-70525890(+)$1	297	85	124	15.9583
GCCCUCCUGGUGGGAGGAACUCCCUCCUGUCUCCUUGGU	chr22:50020587-50020829(-)$1	242	48	87	12.7339
UGGGGGCGCGGAGGGCUGGAAAUCCCGGAUCAcgcgccc	chr19:1104365-1104610(+)$1	245	188	227	15.1135
GAGACGCAGGAGGAGCCCCGAACCCGGGGCUUCUCGGCG	chr19:50879652-50879982(+)$1	330	202	241	12.4128
GCUCCAAUCAAGGGCUGGAACAAACCUGAGGCCACUUGG	chr19:18478347-18478621(+)$1	274	156	195	12.6494
GGGGGGCUGGAGGAGCUGGGCUGGACCCUUCCCACCUGA	chr11:62382690-62383044(-)$1	354	190	229	11.4098
uauguauauguguguuuguguguuuacaaacuaugugua	chr1:24791600-24791898(+)$1	298	250	289	11.5922
CCCCUUCCCUCCUGGGGUGCCCUACCGGAAGGGUGGGAA	chr16:28222600-28222943(-)$1	343	274	313	11.5829
CUGUAUUGCAUGCGCCUUUCGCGGGAAGAGGAGGGAUAC	chr12:7024272-7024510(+)$1	238	164	203	11.6954
CUCUCAUGCGGAAGAGGCAUUCGAGUUACCUGGUGAGAG	chr9:95476117-95476376(-)$1	259	184	223	14.4015
AGCGAGUGACAGAAGGCCCGAGGAGGCCGACUGGGCUGC	chr22:19957770-19958058(-)$1	288	19	58	18.0104
CCGUGGAAGGGUUUCGCGAGGUAGCGGGGACUCCUCGGG	chr19:18547928-18548218(-)$1	290	63	102	12.2378
ugugugugugcaugugcugugugugugcaugugugCAUG	chr17:75211059-75211363(+)$1	304	88	127	12.6988
GGCUCGGGGUGUCCGCUCCCCUCUGGGUCGAGGCCACAG	chr12:133295294-133295553(+)$1	259	153	192	14.0750
CCACACAGGACAGCCUUCCUCCUGAAGAGAAUGUCUUUG	chr15:91509705-91509957(-)$1	252	66	105	12.5334
ggcgcaggcgggcgggcgggUAgcgccccgcguccgagc	chr1:1284343-1284642(-)$1	299	112	151	12.7997
AAGGUGCCGGAGGUCUCAGGGGAGGGGCCUGGGGGCAGC	chr19:18548018-18548295(-)$1	277	200	239	13.0356
CCCGGGGUUGCGGCCAGUGGGACAGCUGGCCCGUUCUCU	chr9:139730723-139730966(+)$1	243	49	88	13.0354
UGAGUAAUGAGACCUGGUACUUGCAucauccauucauca	chr12:125270542-125270852(-)$1	310	208	247	13.6630
GCUCAGUGGUGCGGGGGUGGGCGUGCUUCCGUGGGCUGG	chr14:59655348-59655618(+)$1	270	189	228	13.0625
ACCUGUAGCCCCAGGACCUUUUGGUUGUCAGCUGCUGGU	chr21:34941914-34942267(+)$1	353	20	59	13.3077
UUCAUUUUGUUAAGUAUGCAUGAAUAUAGUUGAGUAUAU	chr3:160153250-160153502(-)$1	252	33	72	14.5260
GGGGUUGGAGCCUGGGAUGAGCCCCGGCAGCGCCUUGGC	chr20:60709719-60709989(+)$1	270	207	246	12.8797
AGCCGAAGCCAGCGGCGGAAGUAGCCGAAGCGGCUGGAG	chr19:56166207-56166468(+)$1	261	171	210	13.0523
CCGGCGCCCAAUACCCGAAGGAGCUCGGAAGGGUGUGGA	chr3:100428886-100429178(+)$1	292	60	99	14.6403
CCCCAGCACAGGCAACCUUAAAAAACGGUCGAGAGGCUU	chr8:145650611-145650879(-)$1	268	44	83	12.0237
UGCUGGCACCAUAGACCCACACAAGGAGCCUGCACAGCA	chr8:144917313-144917620(-)$1	307	225	264	12.3883
GGUCCCCGAUUGUGAGGGCAGUACCUGGCAGCAGGGCCG	chrX:151123176-151123419(-)$1	243	102	141	13.1080
GUUCCCAGGACCUGGGGGGGACCUCCAGCCCCGGGAACC	chr20:62330511-62330757(-)$1	246	196	235	11.9085
UGGGGAAGGGAGCCUCUCAGGGGGUGGCGGUCCACGCCC	chr1:36787722-36787988(+)$1	266	24	63	13.3813
UGGGAAGGUCUAGUGGGCGGGGCCGGCCGGCGCCAGGGC	chr11:65374340-65374656(-)$1	316	148	187	13.7417
CUUUGUGGCAGGUGCCGUGGAGCCCCACAAGGCCCCUGC	chr11:67810671-67810971(+)$1	300	166	205	11.2562
CCGAGCCCUGAUGGGCCUGGCCUGGCCCCUGGGCCGGUG	chr8:145011298-145011633(-)$1	335	26	65	15.2402
CUUCCCCGACACCUGUAUUGCAUGCGCCUUUCGCGGGAA	chr12:7024339-7024592(+)$1	253	85	124	13.7243
AAGCUCCAGGAGUAUCUGAGUGGACGGAGCAUCCUCGCC	chrX:153178614-153178873(-)$1	259	117	156	14.8063
GGGCUUCUGGAAAGCUAGAGGCUGGGCUGAGCCAGGAGU	chr9:35756863-35757157(+)$1	294	7	46	13.0283
GUAAGUGACAGGCCUUAGGACAAUGGGGGCUGUGGCAUG	chr3:9862058-9862337(+)$1	279	78	117	13.1788
CAAUUAUUUUGCUAAGAAUGUGAAUUCAAGUGCAGCUCA	chr4:174253122-174253329(-)$1	207	146	185	12.1786
UACCGGGGAAUGAAGGUGAACAUACACCUCUGUGUGUGC	chr20:32264104-32264414(-)$1	310	152	191	13.4437
UGGGGAAGGGAGCCUCUCAGGGGGUGGCGGUCCACGCCC	chr1:36787596-36787852(+)$1	256	150	189	13.3813
CGCAGGAGAAGCGGUGAUGGAGAGCCGAGCUCGCCCCUU	chr22:20073374-20073640(+)$1	266	153	192	11.3946
GAGGCUGGGGGCGACACGGUACUUGUGAUUGUCCCUGGG	chr16:8951865-8952135(-)$1	270	141	180	14.5830
UCCUUGCUUAUCGUCCCUGUUUUGAGGGCUAUGACUUGA	chr10:103586152-103586453(-)$1	301	184	223	12.6227
UUGGAGGCUUGGCUGCUCUUCCAGCGUCUCUCCUCCCUC	chr17:72858706-72858982(-)$1	276	155	194	12.8334
UUUUAGGUAGUGCUUUUUAUUUUAAAAAUAGUCUAGUUA	chr6:49572943-49573199(-)$1	256	136	175	12.5865
GCGCUGCAgagcgggccgggggaggccgggauggagccc	chr2:242447752-242448020(-)$1	268	117	156	15.3885
CUCGGACCCUAAACCCUGGUGAAGCAGGGGUGAGGGGUG	chr19:50815919-50816230(-)$1	311	43	82	14.7801
GUUUGUGAAAUUAAUACUAGCAUAUUAAGUGUACAAAUA	chr2:8869036-8869307(-)$1	271	179	218	13.4175
gggaggagggAGAGCCCGGCCCGCGGGCCGUCCGUCCCC	chr1:36789250-36789517(+)$1	267	76	115	14.7198
AAAGAACAUGAAUUUGGGGUGCUUCCCAUUUUUUUCUUU	chr20:49201075-49201355(+)$1	280	212	251	12.3325
GGAGCUCCCUAAAGUGCAUGGAAUUGGGGCUUGGGGUGU	chr19:49605880-49606161(+)$1	281	82	121	11.6408
CCGCCGGUCAGCUGCCAGAGUGUGGCGCUCCCGGUGGAC	chr8:102217322-102217663(-)$1	341	247	286	12.7167

#DB
(((((..((((..(((((......)))))...))))..)	chr6:44122803-44123095(+)$1	1	227	266	14.5522
.((.(((.(((((((((..(((...)))..)))))))))	chr7:5569486-5569711(-)$1	1	165	204	11.5176
(((.(((((..((((((.....))).)))..))))).))	chr17:7815311-7815595(+)$1	1	145	184	11.7218
(((..((((.((..((((......))))..))))))...	chr10:70525593-70525890(+)$1	1	85	124	15.9583
((((.((.((.((.((((......)))).)).))..)).	chr22:50020587-50020829(-)$1	1	48	87	12.7339
)(((((((((..(..((((.....))))..).)))))))	chr19:1104365-1104610(+)$1	1	188	227	15.1135
(((.(((..(((((((((((....))))))))))).)))	chr19:50879652-50879982(+)$1	1	202	241	12.4128
(((.(..(((((((((((......))...)))).)))))	chr19:18478347-18478621(+)$1	1	156	195	12.6494
((((((..((...(((...)))....))..))).)))).	chr11:62382690-62383044(-)$1	1	190	229	11.4098
((((((((((((.(((((((....)))))))))))))))	chr1:24791600-24791898(+)$1	1	250	289	11.5922
(((((.((((.((((.........)))).)))).)))..	chr16:28222600-28222943(-)$1	1	274	313	11.5829
.((((((.(.(.(..(((((...))))).).)).)))))	chr12:7024272-7024510(+)$1	1	164	203	11.6954
(((((((..((....(((......))).))..)))))))	chr9:95476117-95476376(-)$1	1	184	223	14.4015
(((.(((..(((..((((......))))..))).)))))	chr22:19957770-19958058(-)$1	1	19	58	18.0104
(((.(((.(..((((((......)))))).)))).))))	chr19:18547928-18548218(-)$1	1	63	102	12.2378
)((..((((((((((((.........)))))))))))).	chr17:75211059-75211363(+)$1	1	88	127	12.6988
((((.(.(((.((.((((......)))).)).))).)))	chr12:133295294-133295553(+)$1	1	153	192	14.0750
.(((((((((((.(((((.....)))).)..)))).)))	chr15:91509705-91509957(-)$1	1	66	105	12.5334
(((.(.((((.(.(((((.....)))))).)))).).))	chr1:1284343-1284642(-)$1	1	112	151	12.7997
..(.((((..(((((((......)))))))...)))).)	chr19:18548018-18548295(-)$1	1	200	239	13.0356
))(((((..(((((((((......))))).)))).))))	chr9:139730723-139730966(+)$1	1	49	88	13.0354
(((..((((.((..((((......))))))))))..)))	chr12:125270542-125270852(-)$1	1	208	247	13.6630
(((((((..((((((((((....)))))))))).)))))	chr14:59655348-59655618(+)$1	1	189	228	13.0625
(((.(((((...(.((((....)))).)..))))).)))	chr21:34941914-34942267(+)$1	1	20	59	13.3077
(((((....((((.((((......)))).))))....))	chr3:160153250-160153502(-)$1	1	33	72	14.5260
(((((.(..(((.(((.....))).)))..)))))))))	chr20:60709719-60709989(+)$1	1	207	246	12.8797
.((...((((.((..(((......)))..))))))...)	chr19:56166207-56166468(+)$1	1	171	210	13.0523
((.((((((.....((((......))))..)))))).).	chr3:100428886-100429178(+)$1	1	60	99	14.6403
(((.(((.....(.(((.........))).)....))).	chr8:145650611-145650879(-)$1	1	44	83	12.0237
((((((((.....(..((......))..).))).)))))	chr8:144917313-144917620(-)$1	1	225	264	12.3883
(((.(((..((((.(((......))).))))..)))..)	chrX:151123176-151123419(-)$1	1	102	141	13.1080
((((((.((..(((((((...)))))))..)))))))))	chr20:62330511-62330757(-)$1	1	196	235	11.9085
((((...(((.(((.(((...))).)))..)))...)))	chr1:36787722-36787988(+)$1	1	24	63	13.3813
((((..((((.....(((...)))))))..).)))))))	chr11:65374340-65374656(-)$1	1	148	187	13.7417
(((((.((((((.(((((((....))))..))).)))))	chr11:67810671-67810971(+)$1	1	166	205	11.2562
(((.((((....(((((......)))))..))))))).)	chr8:145011298-145011633(-)$1	1	26	65	15.2402
(((((((((....(((((...)))))....))).)))))	chr12:7024339-7024592(+)$1	1	85	124	13.7243
.))))))((((...((((......))))...))))((((	chrX:153178614-153178873(-)$1	1	117	156	14.8063
((((((((((..((((........))))...))))))))	chr9:35756863-35757157(+)$1	1	7	46	13.0283
(((.((.((((.(((((......))))).)))).)).))	chr3:9862058-9862337(+)$1	1	78	117	13.1788
(...((((((((...((((....))))....))))...)	chr4:174253122-174253329(-)$1	1	146	185	12.1786
(((((.(((.....((((......))))))).)).))))	chr20:32264104-32264414(-)$1	1	152	191	13.4437
((((...(((.(((.(((...))).)))..)))...)))	chr1:36787596-36787852(+)$1	1	150	189	13.3813
(((..(.((((.((((((((....)))...))))).)))	chr22:20073374-20073640(+)$1	1	153	192	11.3946
..(.((((((((((((((.....)))).)))))))))).	chr16:8951865-8952135(-)$1	1	141	180	14.5830
)))..(((((((((((((......))))..))))..)))	chr10:103586152-103586453(-)$1	1	184	223	12.6227
..(((((...(((.(((.....))))))...)))))...	chr17:72858706-72858982(-)$1	1	155	194	12.8334
...(((.(((.(((((((......)))).)))))).)))	chr6:49572943-49573199(-)$1	1	136	175	12.5865
(.(((.((...(.((((......)))).)..)).)))))	chr2:242447752-242448020(-)$1	1	117	156	15.3885
((....((((...(((((......)))))...))))..)	chr19:50815919-50816230(-)$1	1	43	82	14.7801
(((((((...((((((......))))))...))))))))	chr2:8869036-8869307(-)$1	1	179	218	13.4175
(((.(((.(((..(((((.....)))))..))).)))))	chr1:36789250-36789517(+)$1	1	76	115	14.7198
((((((...(((..(((((....)))))..)))))))))	chr20:49201075-49201355(+)$1	1	212	251	12.3325
...((.((((((..(.((......)).)..)))))).))	chr19:49605880-49606161(+)$1	1	82	121	11.6408
(((((((..(((.((((.....))))))).))))))).)	chr8:102217322-102217663(-)$1	1	247	286	12.7167

#PSSM
c : 0.21	f : 0.12	d : 0.10	g : 0.10	e : 0.09	i : 0.07	= : 0.05	: : 0.05	[ : 0.03	" : 0.03	# : 0.03	h : 0.01	b : 0.01	p : 0.01	
c : 0.20	f : 0.16	g : 0.10	i : 0.09	d : 0.09	e : 0.09	b : 0.05	" : 0.05	= : 0.03	# : 0.03	h : 0.01	a : 0.01	: : 0.01	[ : 0.01	
c : 0.23	f : 0.16	e : 0.12	g : 0.10	i : 0.09	b : 0.05	= : 0.03	d : 0.03	a : 0.03	# : 0.03	h : 0.01	[ : 0.01	" : 0.01	: : 0.01	
[ : 0.27	f : 0.14	i : 0.09	! : 0.07	c : 0.07	g : 0.07	e : 0.07	a : 0.03	= : 0.03	" : 0.03	b : 0.03	d : 0.01	: : 0.01	# : 0.01	
c : 0.20	f : 0.10	e : 0.10	! : 0.09	i : 0.09	g : 0.07	= : 0.05	d : 0.05	" : 0.05	b : 0.05	[ : 0.03	a : 0.03	: : 0.01	# : 0.01	
c : 0.18	[ : 0.12	e : 0.09	d : 0.09	i : 0.07	= : 0.07	f : 0.07	g : 0.07	! : 0.05	" : 0.05	b : 0.03	a : 0.03	# : 0.03	
c : 0.18	d : 0.18	e : 0.09	f : 0.09	[ : 0.09	= : 0.07	! : 0.05	i : 0.05	g : 0.05	" : 0.05	b : 0.03	# : 0.01	a : 0.01	
d : 0.25	! : 0.16	c : 0.12	[ : 0.09	e : 0.07	= : 0.07	f : 0.05	" : 0.05	b : 0.03	i : 0.01	g : 0.01	# : 0.01	$ : 0.01	
d : 0.23	! : 0.16	c : 0.12	e : 0.07	= : 0.07	" : 0.07	b : 0.05	f : 0.05	i : 0.03	a : 0.03	# : 0.03	$ : 0.03	
d : 0.25	c : 0.16	= : 0.10	! : 0.07	" : 0.07	$ : 0.07	[ : 0.05	b : 0.05	i : 0.03	e : 0.03	f : 0.03	# : 0.03	
d : 0.18	[ : 0.14	c : 0.10	! : 0.09	= : 0.09	$ : 0.09	" : 0.07	b : 0.05	f : 0.05	# : 0.03	i : 0.01	e : 0.01	a : 0.01	g : 0.01	
c : 0.16	d : 0.12	b : 0.09	= : 0.09	$ : 0.09	! : 0.07	" : 0.07	f : 0.07	[ : 0.05	# : 0.05	a : 0.03	g : 0.03	i : 0.01	e : 0.01	
! : 0.12	d : 0.12	[ : 0.12	c : 0.09	a : 0.07	= : 0.07	" : 0.07	$ : 0.07	b : 0.05	e : 0.05	# : 0.03	f : 0.03	g : 0.03	i : 0.01	
e : 0.16	! : 0.14	c : 0.12	[ : 0.12	d : 0.10	= : 0.07	g : 0.05	$ : 0.05	f : 0.03	a : 0.03	" : 0.03	i : 0.01	# : 0.01	
d : 0.34	e : 0.18	c : 0.12	! : 0.07	= : 0.05	g : 0.05	f : 0.03	[ : 0.03	i : 0.01	# : 0.01	$ : 0.01	" : 0.01	a : 0.01	
d : 0.36	c : 0.21	e : 0.20	= : 0.05	g : 0.05	f : 0.03	i : 0.01	r : 0.01	! : 0.01	[ : 0.01	
d : 0.34	e : 0.20	c : 0.16	= : 0.05	b : 0.05	g : 0.05	i : 0.01	l : 0.01	r : 0.01	f : 0.01	n : 0.01	q : 0.01	o : 0.01	
d : 0.30	e : 0.14	o : 0.12	c : 0.10	n : 0.07	b : 0.05	r : 0.05	= : 0.03	g : 0.03	! : 0.01	l : 0.01	q : 0.01	
o : 0.47	n : 0.14	l : 0.10	d : 0.05	r : 0.05	= : 0.03	e : 0.03	! : 0.01	g : 0.01	m : 0.01	q : 0.01	c : 0.01	
o : 0.47	n : 0.16	l : 0.09	m : 0.07	c : 0.05	r : 0.05	= : 0.01	g : 0.01	e : 0.01	d : 0.01	q : 0.01	
o : 0.47	n : 0.16	m : 0.14	l : 0.10	r : 0.05	c : 0.03	q : 0.01	
o : 0.47	n : 0.14	m : 0.14	c : 0.10	r : 0.05	l : 0.01	g : 0.01	e : 0.01	q : 0.01	
o : 0.45	m : 0.12	c : 0.10	n : 0.09	r : 0.05	l : 0.03	d : 0.03	4 : 0.01	g : 0.01	e : 0.01	q : 0.01	f : 0.01	
o : 0.34	c : 0.12	e : 0.12	d : 0.10	m : 0.07	r : 0.05	f : 0.03	g : 0.03	l : 0.01	n : 0.01	4 : 0.01	= : 0.01	q : 0.01	
d : 0.40	e : 0.18	c : 0.10	b : 0.05	g : 0.05	] : 0.05	= : 0.03	f : 0.03	r : 0.03	l : 0.01	4 : 0.01	
d : 0.40	e : 0.18	c : 0.16	b : 0.05	g : 0.05	= : 0.03	f : 0.03	r : 0.03	] : 0.01	4 : 0.01	
d : 0.36	c : 0.20	e : 0.16	= : 0.05	g : 0.05	] : 0.05	f : 0.03	3 : 0.01	b : 0.01	2 : 0.01	4 : 0.01	
d : 0.30	e : 0.16	c : 0.14	] : 0.07	= : 0.05	g : 0.05	3 : 0.03	f : 0.03	a : 0.03	2 : 0.03	4 : 0.03	b : 0.01	
2 : 0.34	] : 0.12	3 : 0.10	c : 0.07	= : 0.07	a : 0.07	e : 0.05	g : 0.03	b : 0.03	4 : 0.03	f : 0.01	d : 0.01	
2 : 0.38	3 : 0.12	] : 0.10	b : 0.09	d : 0.09	= : 0.07	g : 0.03	4 : 0.03	c : 0.03	a : 0.01	
c : 0.20	d : 0.18	3 : 0.12	b : 0.09	a : 0.09	2 : 0.07	= : 0.07	g : 0.03	e : 0.03	f : 0.03	i : 0.01	] : 0.01	4 : 0.01	
d : 0.23	c : 0.20	= : 0.10	] : 0.09	e : 0.07	3 : 0.05	i : 0.05	b : 0.05	2 : 0.03	f : 0.03	a : 0.01	4 : 0.01	g : 0.01	
d : 0.29	c : 0.21	= : 0.10	i : 0.09	e : 0.07	b : 0.05	g : 0.05	f : 0.03	a : 0.01	3 : 0.01	4 : 0.01	2 : 0.01	
d : 0.23	] : 0.21	i : 0.09	= : 0.09	e : 0.07	c : 0.07	f : 0.05	g : 0.05	b : 0.03	4 : 0.03	3 : 0.03	
c : 0.16	d : 0.14	i : 0.10	e : 0.10	= : 0.09	f : 0.09	] : 0.07	g : 0.07	2 : 0.05	4 : 0.03	3 : 0.03	b : 0.01	
c : 0.14	d : 0.10	i : 0.10	e : 0.10	] : 0.10	f : 0.09	= : 0.07	g : 0.07	3 : 0.07	2 : 0.05	a : 0.01	4 : 0.01	b : 0.01	
c : 0.16	i : 0.10	e : 0.10	g : 0.10	] : 0.09	f : 0.09	= : 0.07	d : 0.07	2 : 0.05	3 : 0.05	4 : 0.03	b : 0.01	a : 0.01	
e : 0.14	c : 0.12	i : 0.10	= : 0.09	f : 0.09	g : 0.09	3 : 0.07	d : 0.07	2 : 0.05	] : 0.05	b : 0.03	a : 0.03	4 : 0.01	
c : 0.14	e : 0.14	f : 0.10	i : 0.10	] : 0.10	d : 0.10	g : 0.09	= : 0.05	b : 0.05	3 : 0.03	4 : 0.01	a : 0.01	

#score	726.7070847885714
#seq	55
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_CDS_m3_run1.txt

#BEAR
[ddddnnnnndddd]	chr11:64039047-64039278(+)$1	231	98	113	10.6695
eee[annnnna]eee	chr17:48545935-48546191(+)$1	256	43	58	9.6502
eeeeennnnneeeee	chr12:58149337-58149582(-)$1	245	48	63	10.7217
[eeeeellleeeee]	chr19:39440661-39440866(-)$1	205	44	59	6.7931
eeeeeooooooeeee	chr5:453527-453835(+)$1	308	282	297	7.5361
eeeeennnnneeeee	chr21:47612308-47612645(-)$1	337	286	301	10.7217
eeeeennnnneeeee	chr16:89804984-89805232(+)$1	248	140	155	10.7217
eddddnnnnndddd:	chr17:5329461-5329732(+)$1	271	161	176	9.6690
!!cccnnnnnccc33	chr7:139876520-139876783(-)$1	263	220	235	8.5417
eeeeennnnneeeee	chr3:52489566-52489844(+)$1	278	173	188	10.7217
$ddddnnnnndddd5	chr22:21212779-21213013(-)$1	234	137	152	9.5334
eeeeeooooooeeee	chr17:39913686-39913939(-)$1	253	22	37	7.5361
!ddddnnnnndddd2	chr20:34241156-34241368(-)$1	212	106	121	10.4899
ddddoooooodddd3	chr21:43166134-43166420(-)$1	286	19	34	6.9809
[ddddoooooodddd	chr17:78393212-78393494(+)$1	282	223	238	7.0781
eeeeennnnneeeee	chr17:4686070-4686323(+)$1	253	237	252	10.7217
!ddddnnnnndddd2	chr20:34241138-34241356(-)$1	218	94	109	10.4899
[eeeeellleeeee]	chr19:39440666-39440872(-)$1	206	50	65	6.7931
eeeeennnnneeeee	chr8:11566104-11566368(+)$1	264	204	219	10.7217
[ddddnnnnnddddc	chr1:150551691-150551919(-)$1	228	148	163	10.3480
!ddddnnnnndddd2	chr20:34241104-34241320(-)$1	216	58	73	10.4899
eeeeennnnneeeee	chr7:100732576-100732861(+)$1	285	58	73	10.7217
:ddddnnnnndddd:	chr16:58550707-58550969(+)$1	262	39	54	8.6246
eeeeeooooooeeee	chr18:77894632-77894891(+)$1	259	172	187	7.5361
gggggnnnnnggggg	chr3:98451554-98451848(+)$1	294	137	152	8.3422
dddddnnnnndddd]	chr4:73935047-73935299(-)$1	252	39	54	10.3412
$ddddnnnnndddd5	chr22:21212813-21213063(-)$1	250	187	202	9.5334
[eeeeellleeeee]	chr14:23770951-23771156(+)$1	205	46	61	6.7931
:ddddnnnnndddd:	chr19:1010196-1010463(-)$1	267	68	83	8.6246
:ddddnnnnndddd:	chr22:42334996-42335253(-)$1	257	167	182	8.6246
eeeeennnnneeeee	chr7:100843668-100843977(-)$1	309	83	98	10.7217
[ddddnnnnndddd]	chr4:15656785-15657067(-)$1	282	43	58	10.6695
ddddoooooodddd]	chr16:55543042-55543289(+)$1	247	136	151	6.9995
gggggnnnnnggggg	chr16:30913686-30913951(+)$1	265	181	196	8.3422
eeeeennnnneeeee	chr9:139137424-139137635(-)$1	211	179	194	10.7217
gggggnnnnnggggg	chr2:24149442-24149693(-)$1	251	6	21	8.3422
[eeeeellleeeee]	chr14:23770956-23771174(+)$1	218	41	56	6.7931
eeeeennnnneeeee	chr2:32582190-32582445(+)$1	255	211	226	10.7217
:ddddnnnnndddd:	chr7:6066040-6066331(-)$1	291	25	40	8.6246
eeeeeooooooeeee	chr9:139701014-139701313(-)$1	299	118	133	7.5361
eeeeannnnna]eee	chr7:39990420-39990644(+)$1	224	167	182	9.9668
fddddnnnnndddd2	chr22:40742480-40742730(+)$1	250	163	178	10.1696
[ddddnnnnnddddc	chr1:150551656-150551891(-)$1	235	120	135	10.3480
gggggnnnnnggggg	chr16:2264600-2264868(-)$1	268	46	61	8.3422
eeeeennnnneeeee	chr12:58149386-58149626(-)$1	240	92	107	10.7217
eeeeennnnneeeee	chr2:27448530-27448807(+)$1	277	137	152	10.7217
c[cccnnnnnccc]c	chr16:31519349-31519644(-)$1	295	11	26	7.9628
eeeeeooooooeeee	chr20:13279721-13279992(-)$1	271	25	40	7.5361
!ddddnnnnndddd2	chr20:34241122-34241338(-)$1	216	76	91	10.4899
eeeeennnnneeeee	chr16:89787126-89787369(-)$1	243	23	38	10.7217
fddddnnnnndddd:	chr11:65732337-65732633(+)$1	296	249	264	9.4204
===[annnnna]===	chr3:38159168-38159442(-)$1	274	9	24	8.3053

#otherMatches

#Seq PSSM
GCCCAGAGGUUGGGG	chr11:64039047-64039278(+)$1	231	98	113	10.6695
GCACCGGGAAGUUGU	chr17:48545935-48546191(+)$1	256	43	58	9.6502
gcggcUCCUUGUCGC	chr12:58149337-58149582(-)$1	245	48	63	10.7217
CCGCGCCUGGCGCGA	chr19:39440661-39440866(-)$1	205	44	59	6.7931
AAAGCAAACUGGCUU	chr5:453527-453835(+)$1	308	282	297	7.5361
CCCUAAAAGCUAGGG	chr21:47612308-47612645(-)$1	337	286	301	10.7217
GAGGAGCAGGUCCUC	chr16:89804984-89805232(+)$1	248	140	155	10.7217
AGUGUUCCACACACA	chr17:5329461-5329732(+)$1	271	161	176	9.6690
AAGGACUGGUUCCAC	chr7:139876520-139876783(-)$1	263	220	235	8.5417
ACACUUAUACGGUGU	chr3:52489566-52489844(+)$1	278	173	188	10.7217
ACCAGCAUCCUUGGA	chr22:21212779-21213013(-)$1	234	137	152	9.5334
GGAGUUGCUGCACUC	chr17:39913686-39913939(-)$1	253	22	37	7.5361
ACUGCCCAGUGCAGG	chr20:34241156-34241368(-)$1	212	106	121	10.4899
CAGAUGUGUCUCUGG	chr21:43166134-43166420(-)$1	286	19	34	6.9809
ucagcccuucugcug	chr17:78393212-78393494(+)$1	282	223	238	7.0781
CUGCGGCGAUUGCAG	chr17:4686070-4686323(+)$1	253	237	252	10.7217
ACUGCCCAGUGCAGG	chr20:34241138-34241356(-)$1	218	94	109	10.4899
CCGCGCCUGGCGCGA	chr19:39440666-39440872(-)$1	206	50	65	6.7931
CGGCUUACAUGGCCG	chr8:11566104-11566368(+)$1	264	204	219	10.7217
CGCCGCCCAUUGGCG	chr1:150551691-150551919(-)$1	228	148	163	10.3480
ACUGCCCAGUGCAGG	chr20:34241104-34241320(-)$1	216	58	73	10.4899
CGGGCUCCGUGUCUG	chr7:100732576-100732861(+)$1	285	58	73	10.7217
AGGAGCCCAACUCCC	chr16:58550707-58550969(+)$1	262	39	54	8.6246
AGCCCCAUUGAGGGU	chr18:77894632-77894891(+)$1	259	172	187	7.5361
GGGCUUCUGCGGCCC	chr3:98451554-98451848(+)$1	294	137	152	8.3422
CCACUCUCCCAGUGU	chr4:73935047-73935299(-)$1	252	39	54	10.3412
ACCAGCAUCCUUGGA	chr22:21212813-21213063(-)$1	250	187	202	9.5334
AGAUGCGCUGCGUCA	chr14:23770951-23771156(+)$1	205	46	61	6.7931
CGGCCUCCAUGGCCC	chr19:1010196-1010463(-)$1	267	68	83	8.6246
GAGGGCCCCUCCCUG	chr22:42334996-42335253(-)$1	257	167	182	8.6246
AGAGCUGGUUGUUCU	chr7:100843668-100843977(-)$1	309	83	98	10.7217
gcgccgacggggcgg	chr4:15656785-15657067(-)$1	282	43	58	10.6695
UGCCCCGUCAGGCGU	chr16:55543042-55543289(+)$1	247	136	151	6.9995
GGGGCAGCUCGCCCC	chr16:30913686-30913951(+)$1	265	181	196	8.3422
UGCUGGACAGCGGCA	chr9:139137424-139137635(-)$1	211	179	194	10.7217
CUCGGCUCUCCCGGG	chr2:24149442-24149693(-)$1	251	6	21	8.3422
AGAUGCGCUGCGUCA	chr14:23770956-23771174(+)$1	218	41	56	6.7931
UGCGGGACGGCUGCA	chr2:32582190-32582445(+)$1	255	211	226	10.7217
CUCUUGGGGAAGGAA	chr7:6066040-6066331(-)$1	291	25	40	8.6246
GGAGGGUCUCAUCUC	chr9:139701014-139701313(-)$1	299	118	133	7.5361
GAAGCGUCGGGUCUU	chr7:39990420-39990644(+)$1	224	167	182	9.9668
UUCGUGUUUAGCGAC	chr22:40742480-40742730(+)$1	250	163	178	10.1696
CGCCGCCCAUUGGCG	chr1:150551656-150551891(-)$1	235	120	135	10.3480
gcUGCGAGGAGCGGC	chr16:2264600-2264868(-)$1	268	46	61	8.3422
gcggcUCCUUGUCGC	chr12:58149386-58149626(-)$1	240	92	107	10.7217
GGAGCUCUCUGCUCU	chr2:27448530-27448807(+)$1	277	137	152	10.7217
CACGGGGCUGCCGCG	chr16:31519349-31519644(-)$1	295	11	26	7.9628
UCCACCUUGUAGUGG	chr20:13279721-13279992(-)$1	271	25	40	7.5361
ACUGCCCAGUGCAGG	chr20:34241122-34241338(-)$1	216	76	91	10.4899
AGCGCCGGCUGCGUU	chr16:89787126-89787369(-)$1	243	23	38	10.7217
UGACAGCUGAUGUCA	chr11:65732337-65732633(+)$1	296	249	264	9.4204
CCAGGAGCUCUGUGG	chr3:38159168-38159442(-)$1	274	9	24	8.3053

#DB
.((((.....)))).	chr11:64039047-64039278(+)$1	1	98	113	10.6695
(((.(.....).)))	chr17:48545935-48546191(+)$1	1	43	58	9.6502
(((((.....)))))	chr12:58149337-58149582(-)$1	1	48	63	10.7217
.(((((...))))).	chr19:39440661-39440866(-)$1	1	44	59	6.7931
(((((......))))	chr5:453527-453835(+)$1	1	282	297	7.5361
(((((.....)))))	chr21:47612308-47612645(-)$1	1	286	301	10.7217
(((((.....)))))	chr16:89804984-89805232(+)$1	1	140	155	10.7217
)((((.....)))).	chr17:5329461-5329732(+)$1	1	161	176	9.6690
..(((.....)))..	chr7:139876520-139876783(-)$1	1	220	235	8.5417
(((((.....)))))	chr3:52489566-52489844(+)$1	1	173	188	10.7217
.((((.....)))).	chr22:21212779-21213013(-)$1	1	137	152	9.5334
(((((......))))	chr17:39913686-39913939(-)$1	1	22	37	7.5361
.((((.....)))).	chr20:34241156-34241368(-)$1	1	106	121	10.4899
((((......)))).	chr21:43166134-43166420(-)$1	1	19	34	6.9809
.((((......))))	chr17:78393212-78393494(+)$1	1	223	238	7.0781
(((((.....)))))	chr17:4686070-4686323(+)$1	1	237	252	10.7217
.((((.....)))).	chr20:34241138-34241356(-)$1	1	94	109	10.4899
.(((((...))))).	chr19:39440666-39440872(-)$1	1	50	65	6.7931
(((((.....)))))	chr8:11566104-11566368(+)$1	1	204	219	10.7217
.((((.....)))))	chr1:150551691-150551919(-)$1	1	148	163	10.3480
.((((.....)))).	chr20:34241104-34241320(-)$1	1	58	73	10.4899
(((((.....)))))	chr7:100732576-100732861(+)$1	1	58	73	10.7217
.((((.....)))).	chr16:58550707-58550969(+)$1	1	39	54	8.6246
(((((......))))	chr18:77894632-77894891(+)$1	1	172	187	7.5361
(((((.....)))))	chr3:98451554-98451848(+)$1	1	137	152	8.3422
(((((.....)))).	chr4:73935047-73935299(-)$1	1	39	54	10.3412
.((((.....)))).	chr22:21212813-21213063(-)$1	1	187	202	9.5334
.(((((...))))).	chr14:23770951-23771156(+)$1	1	46	61	6.7931
.((((.....)))).	chr19:1010196-1010463(-)$1	1	68	83	8.6246
.((((.....)))).	chr22:42334996-42335253(-)$1	1	167	182	8.6246
(((((.....)))))	chr7:100843668-100843977(-)$1	1	83	98	10.7217
.((((.....)))).	chr4:15656785-15657067(-)$1	1	43	58	10.6695
((((......)))).	chr16:55543042-55543289(+)$1	1	136	151	6.9995
(((((.....)))))	chr16:30913686-30913951(+)$1	1	181	196	8.3422
(((((.....)))))	chr9:139137424-139137635(-)$1	1	179	194	10.7217
(((((.....)))))	chr2:24149442-24149693(-)$1	1	6	21	8.3422
.(((((...))))).	chr14:23770956-23771174(+)$1	1	41	56	6.7931
(((((.....)))))	chr2:32582190-32582445(+)$1	1	211	226	10.7217
.((((.....)))).	chr7:6066040-6066331(-)$1	1	25	40	8.6246
(((((......))))	chr9:139701014-139701313(-)$1	1	118	133	7.5361
(((((.....).)))	chr7:39990420-39990644(+)$1	1	167	182	9.9668
(((((.....)))).	chr22:40742480-40742730(+)$1	1	163	178	10.1696
.((((.....)))))	chr1:150551656-150551891(-)$1	1	120	135	10.3480
(((((.....)))))	chr16:2264600-2264868(-)$1	1	46	61	8.3422
(((((.....)))))	chr12:58149386-58149626(-)$1	1	92	107	10.7217
(((((.....)))))	chr2:27448530-27448807(+)$1	1	137	152	10.7217
(.(((.....))).)	chr16:31519349-31519644(-)$1	1	11	26	7.9628
(((((......))))	chr20:13279721-13279992(-)$1	1	25	40	7.5361
.((((.....)))).	chr20:34241122-34241338(-)$1	1	76	91	10.4899
(((((.....)))))	chr16:89787126-89787369(-)$1	1	23	38	10.7217
)((((.....)))).	chr11:65732337-65732633(+)$1	1	249	264	9.4204
(((.(.....).)))	chr3:38159168-38159442(-)$1	1	9	24	8.3053

#PSSM
e : 0.40	[ : 0.17	! : 0.09	: : 0.07	g : 0.07	d : 0.05	$ : 0.03	f : 0.03	c : 0.01	= : 0.01	
e : 0.46	d : 0.40	g : 0.07	! : 0.01	[ : 0.01	= : 0.01	
e : 0.46	d : 0.40	g : 0.07	c : 0.03	= : 0.01	
e : 0.44	d : 0.40	g : 0.07	[ : 0.03	c : 0.03	
e : 0.42	d : 0.36	g : 0.07	a : 0.05	c : 0.03	o : 0.03	
n : 0.76	o : 0.15	e : 0.07	
n : 0.76	o : 0.15	l : 0.07	
n : 0.76	o : 0.15	l : 0.07	
n : 0.76	o : 0.15	l : 0.07	
n : 0.76	o : 0.15	e : 0.07	
d : 0.38	e : 0.32	o : 0.11	g : 0.07	a : 0.05	c : 0.03	
e : 0.42	d : 0.40	g : 0.07	] : 0.05	c : 0.03	
e : 0.46	d : 0.40	g : 0.07	c : 0.03	= : 0.01	
e : 0.46	d : 0.40	g : 0.07	3 : 0.01	] : 0.01	= : 0.01	
e : 0.38	] : 0.15	: : 0.11	2 : 0.09	g : 0.07	c : 0.05	3 : 0.03	5 : 0.03	d : 0.01	= : 0.01	

#score	480.2510773977056
#seq	52
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_transcript_m3_run1.txt

#BEAR
AYYHHHHHHHH}BB}CCC}A}DDDDDDDD	chr4:26859261-26859612(+)$1	351	225	254	14.5245
IIIIIIIIYYEEEEE}BB}DDDD}CCC}F	chr17:62223257-62223461(+)$1	204	156	185	15.7953
:EEEEEFFFFFFYYA}EEEEE~~~~DDDD	chrX:53111452-53111742(+)$1	290	261	290	13.8316
ZZJJJJJJJJJJCCC}DDDD}EEEEE:::	chr17:80188061-80188378(+)$1	317	229	258	13.8609
:A}FFFFFFYYBB}DDDD}DDDD}FFFFF	chr6:149638752-149639006(+)$1	254	82	111	13.3059
EE}A}FFFFFF}BB}BBCCC}BB~~~~CC	chr10:35104077-35104339(-)$1	262	184	213	15.1452
C}FFFFFFDDDD}BB}BB}DDDD}FFFFF	chr12:57472340-57472661(-)$1	321	268	297	14.4528
BFFFFFFYYEEEEEDDDD}EEEEEYYCCC	chr8:62627000-62627245(-)$1	245	212	241	13.1798
CC}HHHHHHHH?????CCCDDDDYYBBcc	chr15:85197335-85197614(-)$1	279	223	252	12.7575
FFF}A}GGGGGGG}EEEEEA}BBZZZBB}	chr9:133454878-133455208(+)$1	330	280	309	12.6797
~~~JJJJJJJJJJYYA}A}DDDD}FFFFF	chrX:73513183-73513471(-)$1	288	194	223	16.7702
YYIIIIIIIII}CCC}CCC}AEEEEEYYB	chr19:4909413-4909688(+)$1	275	230	259	16.2395
CZZZGGGGGGG}EEEEEYYDDDD~~~~CC	chr10:103577977-103578294(-)$1	317	266	295	14.8627
~~JJJJJJJJJJ}CCC______BB}DDDD	chrX:16888228-16888509(-)$1	281	148	177	14.8978
DD}JJJJJJJJJJYYEEEEEYYCCCYYDD	chr19:19431112-19431418(-)$1	306	250	279	15.6095
CJJJJJJJJJJJJBB}CCC______BB}D	chr1:161719481-161719779(+)$1	298	225	254	14.5428
IIIIIIII}FFFFFF}BB}DDDDFFFFFF	chr3:49761082-49761449(-)$1	367	194	223	15.7405
DBBJJJJJJJJJJJJJJJ}BB~~~~CCC}	chr7:66119426-66119748(+)$1	322	151	180	14.7116
:A}IIIIIIIII}EEEEE}EEEEEZZZEE	chr16:31044775-31045096(+)$1	321	101	130	17.4999
dd:HHHHHHHH}CCC}BB}DDDDZZZFFF	chr17:75405656-75405957(+)$1	301	194	223	15.3415
EEYYCCCEEEEECCC}BB}EEEEEYYBB}	chr17:35306245-35306531(+)$1	286	250	279	13.6772
BB}HHHHHHHHYYCCCBBYYBB~~~~BBY	chr17:59940684-59940974(-)$1	290	249	278	16.8192
FFFFFGGGGGGG}CCCBBYYBBCCC}DDD	chr2:170550880-170551213(+)$1	333	277	306	13.1785
D}AIIIIIIIII}EEEEE}DDDDJJJJJJ	chr21:46962180-46962443(-)$1	263	178	207	14.9371
~~~~BB}HHHHHHHH~~~~DDDDZZZDDD	chr2:183903038-183903299(-)$1	261	223	252	14.3525
FFFFFFFFFFFCCC}CCC}DDDD::::::	chr3:49044728-49044977(+)$1	249	213	242	12.2311
DD}IIIIIIIIICCC}BB}DDDDZZZCCC	chr4:107237194-107237467(-)$1	273	206	235	19.0551
FFFFDDDDBBEEEEE}AYYDDDDZZZCCC	chr10:69834676-69835038(-)$1	362	159	188	13.8070
c:JJJJJJJJJJJJA}AFFFFFF}BB:::	chr5:87564430-87564742(-)$1	312	163	192	12.5199
DDDDDHHHHHHHHYYCCC}DDDDYYFFFF	chr3:182817117-182817403(-)$1	286	161	190	14.8164
dd::FFFFFF}EEEEE}A}DDDD}EEEEE	chr3:183353320-183353657(+)$1	337	271	300	13.0169
FFFF}IIIIIIIIIZZZDDDDCCCYYDDD	chr6:24403074-24403370(+)$1	296	258	287	15.0924
bbHHHHHHHH}A}A~~~~CCC}EEEEE:f	chr2:70475527-70475809(-)$1	282	238	267	11.9177
:::FFFFFF}EEEEEZZZFFFFFFYYA}H	chr6:31926564-31926839(-)$1	275	149	178	12.3468
dFFFFFFEEEEECCC}BBBBYYBB}DDDD	chr16:23652706-23653017(+)$1	311	271	300	12.4676
JJJJJJJJJJJZZZCCCZZZEEEEE}DDD	chr4:106394979-106395315(-)$1	336	184	213	14.7173
cccJJJJJJJJJJJJZZZEEEEEZZZGGG	chr3:121264630-121264938(-)$1	308	178	207	12.7877
CC}GGGGGGGZZZCCCZZZDDDD}BB}CC	chr2:42720945-42721216(-)$1	271	206	235	13.9153
EEEE}AJJJJJJJJJJJJJDDDDZZZA}A	chr10:70883864-70884145(+)$1	281	194	223	13.9464
FFFFFF}HHHHHHHH}BB}DDDD:::BBf	chr14:39644349-39644646(+)$1	297	61	90	12.7484
CC}DDDD}CCC}CCCYYA}DDDD}A}DDD	chr1:93913590-93913890(+)$1	300	262	291	13.8650
ZZZEEEEE}CCCCCC}BB}A}A}BB}BBY	chr6:34664375-34664668(-)$1	293	215	244	12.6384
ZIIIIIIIII}EEEEEBB}FFFFFF}A}A	chr11:67070896-67071214(+)$1	318	238	267	15.4917
BB}A}GGGGGGGCCC}BBDDDD}EEEEE}	chr3:9439203-9439520(+)$1	317	269	298	14.0203
CCCJJJJJJJJJJJ?????DDDDYYEEEE	chr19:1408284-1408543(+)$1	259	228	257	15.2792
BB}JJJJJJJJJJA}IIIIIIIIIYYCCC	chr3:58522745-58523061(-)$1	316	189	218	13.1528
HHHHHHHHYYFFFFFF}EEEEEYYA}CCC	chr1:52831645-52831937(-)$1	292	229	258	13.1239
YJJJJJJJJJJJEEEEEYYDDDD}BB}AF	chr20:60757992-60758303(+)$1	311	269	298	17.2282
}CCC}A}DDDD}CCC~~~~DDDD}CCC}B	chr6:35995485-35995738(+)$1	253	140	169	13.4444
HHHHHHHHFFFFFF}EEEEECCCZZZCCC	chr19:57831779-57832060(+)$1	281	251	280	13.8379
GG}JJJJJJJJJJBB~~~~CCC}BB:ccc	chr8:142410574-142410865(+)$1	291	241	270	12.6289
}DDDDFFFFFF}CCC}BBYYA}FFFFFF~	chr10:103113738-103114088(+)$1	350	277	306	13.1942
DD}FFFFFFA}FFFFFFZZZDDDD}HHHH	chr15:42783135-42783417(-)$1	282	194	223	12.7208
dd:IIIIIIIIIYYCCCYYDDDDYYEEEE	chr16:28962289-28962578(+)$1	289	239	268	15.9845
BB}IIIIIIIIIEEEEEZZZEEEEE}AYY	chr2:219433493-219433799(+)$1	306	260	289	17.0442
FF}EEEEE}EEEEEEEEEEDDDD}FFFFF	chr3:122785919-122786153(+)$1	234	181	210	12.7567
BB}HHHHHHHH}EEEEEYYEEEEE~~~~G	chr12:107168311-107168688(+)$1	377	339	368	16.7892
EEA}JJJJJJJJJJCCC}EEEEE::::::	chr19:57351900-57352150(-)$1	250	221	250	12.5930
IIIIIII}FFFFFF}CCC}EEEEE}FFFF	chr3:184079417-184079701(+)$1	284	236	265	15.1459
EYYBBYYBB}EEEEE}AYYEEEEEZZZBB	chr12:64845803-64846077(+)$1	274	211	240	13.3379
~~~~FFFFFFZZZBB}BB}DDDD~~~~DD	chr2:120770547-120770821(+)$1	274	165	194	15.4906

#otherMatches

#Seq PSSM
GGAUCCUGCUGUGCCUCUGUGCAGGGCGC	chr4:26859261-26859612(+)$1	351	225	254	14.5245
GGAGCAGGGAGGCGUAGGGGGGCCGGCCU	chr17:62223257-62223461(+)$1	204	156	185	15.7953
ACCCGCCGCCUGAGCAGCUCCGAGUCUCC	chrX:53111452-53111742(+)$1	290	261	290	13.8316
UGGGCAGGGCCCGCCAUCCAGGCCACCCA	chr17:80188061-80188378(+)$1	317	229	258	13.8609
ACGCCGCCCAGCCGUCGUUUUUGAUCUGC	chr6:149638752-149639006(+)$1	254	82	111	13.3059
GCggcggggagaggcgaggcaagccccgg	chr10:35104077-35104339(-)$1	262	184	213	15.1452
CGGGCAGCAGCUGCCAAGGGGGCAGGUGC	chr12:57472340-57472661(-)$1	321	268	297	14.4528
CCGCUCCAGCGGCCCGCCGCCGCCAGCGG	chr8:62627000-62627245(-)$1	245	212	241	13.1798
GCACGUUGGGGAUCCUGGUGCAGAGUGGG	chr15:85197335-85197614(-)$1	279	223	252	12.7575
CGCAGCCGGCUGGCAGGAGCACGAGAUCC	chr9:133454878-133455208(+)$1	330	280	309	12.6797
UCUCUCUCUCUCUUUCAUGCCGCUCUCUC	chrX:73513183-73513471(-)$1	288	194	223	16.7702
AAGCUGUUCGCGGCGACCGGAGAGGUGAG	chr19:4909413-4909688(+)$1	275	230	259	16.2395
UUAGGCUUCUGGCGCCCCAGCUUAAAGCC	chr10:103577977-103578294(-)$1	317	266	295	14.8627
CGGGGAGGAGGCAGGAAAGAAGGACGCGG	chrX:16888228-16888509(-)$1	281	148	177	14.8978
UUCAGCCCCGGGGCAGCCCACAGCGUCGG	chr19:19431112-19431418(-)$1	306	250	279	15.6095
CCGCGGCCGUCGCGGAGCCAGAUCACCUG	chr1:161719481-161719779(+)$1	298	225	254	14.5428
GGCCGGGCACGGCGUUGGGAGUGCGCGGC	chr3:49761082-49761449(-)$1	367	194	223	15.7405
AGCGGCUGUGUGGAUGUCGGCGAAGCCGC	chr7:66119426-66119748(+)$1	322	151	180	14.7116
GGGCUGAGGCUGCGGGAGCUGGAGCGGGG	chr16:31044775-31045096(+)$1	321	101	130	17.4999
CCGGAGGGGCGCGCCGCGGCCAGACAGCC	chr17:75405656-75405957(+)$1	301	194	223	15.3415
CUGAAGCGGACCCCGAGGAAGGUGAGGCC	chr17:35306245-35306531(+)$1	286	250	279	13.6772
UUUGCUCUCAGAAGUCGGUUUCCUUUCCU	chr17:59940684-59940974(-)$1	290	249	278	16.8192
GCCCUGCCUGCUACUCCCAUCCCCACCUG	chr2:170550880-170551213(+)$1	333	277	306	13.1785
GGGCCACGGGGCCGCGUGUCGGGGGCUGC	chr21:46962180-46962443(-)$1	263	178	207	14.9371
ggaagggcggcgggcggaaggcaggaggc	chr2:183903038-183903299(-)$1	261	223	252	14.3525
CGUGGGGGACCGGCUGUUGGCGGGUGAGG	chr3:49044728-49044977(+)$1	249	213	242	12.2311
AGCGUCUGAGCUCCCGGCGUUCCAGGAGU	chr4:107237194-107237467(-)$1	273	206	235	19.0551
GGAGGGGAGCAGCGGAGCAGCGGCACAGA	chr10:69834676-69835038(-)$1	362	159	188	13.8070
AACUCCAGGGUGUCUGGUCCACGACCUAU	chr5:87564430-87564742(-)$1	312	163	192	12.5199
CGGGCUCCAGGGACAUGGCGGCGGCCUCU	chr3:182817117-182817403(-)$1	286	161	190	14.8164
GAGUCCUCGGGGGCGGAGGGGCGACGGCG	chr3:183353320-183353657(+)$1	337	271	300	13.0169
GGACGCUGUGUGCCCUGGCCUUGGACGUG	chr6:24403074-24403370(+)$1	296	258	287	15.0924
GCAGCAGCCAUGGAGGACGAGAUGCCCAA	chr2:70475527-70475809(-)$1	282	238	267	11.9177
CCCCCGGUUGCCGCCCCCUCGGGUAAGGC	chr6:31926564-31926839(-)$1	275	149	178	12.3468
UCCCAACCUGCCCCUACCCCACCAACCCC	chr16:23652706-23653017(+)$1	311	271	300	12.4676
CCGGGUCGCGCCGUGCUAUGGCCCUGUAC	chr4:106394979-106395315(-)$1	336	184	213	14.7173
CUGUGGCUUGCCCUGAUCGGCCGAGAAGA	chr3:121264630-121264938(-)$1	308	178	207	12.7877
CCCUCAGGGGGUCGGCCCCGCGGCUUGGG	chr2:42720945-42721216(-)$1	271	206	235	13.9153
GCUCGCCUCCCGCCCUCGUCCCGGAGCGC	chr10:70883864-70884145(+)$1	281	194	223	13.9464
CUUUCGCGCCUCGGCGGCGCGGCAUAGCC	chr14:39644349-39644646(+)$1	297	61	90	12.7484
GGAGCUGUGGGUGAGUCGGGGAGAGGGGC	chr1:93913590-93913890(+)$1	300	262	291	13.8650
AGGUccccgggcccggcggcgcggcggcg	chr6:34664375-34664668(-)$1	293	215	244	12.6384
CGGCGCCUCCACGCCCGUGGGGCCCUGGG	chr11:67070896-67071214(+)$1	318	238	267	15.4917
GGCCCUGCCCCCCCUCCCCGCCUUUGGCU	chr3:9439203-9439520(+)$1	317	269	298	14.0203
UCCGGGCUCCCCGCUCCCAUCCCACCCCC	chr19:1408284-1408543(+)$1	259	228	257	15.2792
UGCGGACACAGGACAGAGGGGAGCCAGGU	chr3:58522745-58523061(-)$1	316	189	218	13.1528
GUUCUGGGGACCGCGGGGGUAGAUGGAgg	chr1:52831645-52831937(-)$1	292	229	258	13.1239
GCCGGGCUGCGAACCCCGGCGGGACCGAG	chr20:60757992-60758303(+)$1	311	269	298	17.2282
GCGACGCAGCCCGGAGUCGGCCUUGUAGG	chr6:35995485-35995738(+)$1	253	140	169	13.4444
CUAGGCCUCCGCAGCCGCCCUCCGUCUCC	chr19:57831779-57832060(+)$1	281	251	280	13.8379
CCUAUCCUGGCUGCUGUGUAGCUCCUGCC	chr8:142410574-142410865(+)$1	291	241	270	12.6289
GGAGGCGCUGGCGUUGGCGGCGUCGCUGG	chr10:103113738-103114088(+)$1	350	277	306	13.1942
CCUGGCUCUCGGCGGCCUGAUGGAGUAAG	chr15:42783135-42783417(-)$1	282	194	223	12.7208
GUGCCGCGGACGAGGUUGAGGUGGAGCCC	chr16:28962289-28962578(+)$1	289	239	268	15.9845
UUUCGGCCUUCUCUCCUAAUUCCCGGUGU	chr2:219433493-219433799(+)$1	306	260	289	17.0442
GCGUGCCCUUCUGCGCUCUCUGCUCCAGC	chr3:122785919-122786153(+)$1	234	181	210	12.7567
CCGCCCUCCGUGCUUGCACAUCGCAUCCU	chr12:107168311-107168688(+)$1	377	339	368	16.7892
CCCGCGCGCCUCCUGCCCGCGGGACCUUG	chr19:57351900-57352150(-)$1	250	221	250	12.5930
GGCCGGCCCGGGUUCGCGGUUCCCCGUGC	chr3:184079417-184079701(+)$1	284	236	265	15.1459
GGUCGGUCAGGCCUGCGCCGCCCGGCGGG	chr12:64845803-64846077(+)$1	274	211	240	13.3379
GGAGCCGCCCCUUUCUCAGCCUUGCUCGG	chr2:120770547-120770821(+)$1	274	165	194	15.4906

#DB
)..)))))))).)).))).).))))))))	chr4:26859261-26859612(+)$1	1	225	254	14.5245
))))))))..))))).)).)))).))).)	chr17:62223257-62223461(+)$1	1	156	185	15.7953
.)))))))))))..).)))))....))))	chrX:53111452-53111742(+)$1	1	261	290	13.8316
..))))))))))))).)))).)))))...	chr17:80188061-80188378(+)$1	1	229	258	13.8609
.).))))))..)).)))).)))).)))))	chr6:149638752-149639006(+)$1	1	82	111	13.3059
)).).)))))).)).))))).))....))	chr10:35104077-35104339(-)$1	1	184	213	15.1452
).)))))))))).)).)).)))).)))))	chr12:57472340-57472661(-)$1	1	268	297	14.4528
)))))))..))))))))).)))))..)))	chr8:62627000-62627245(-)$1	1	212	241	13.1798
)).)))))))).....)))))))..))((	chr15:85197335-85197614(-)$1	1	223	252	12.7575
))).).))))))).)))))).))...)).	chr9:133454878-133455208(+)$1	1	280	309	12.6797
...))))))))))..).).)))).)))))	chrX:73513183-73513471(-)$1	1	194	223	16.7702
..))))))))).))).))).))))))..)	chr19:4909413-4909688(+)$1	1	230	259	16.2395
)...))))))).)))))..))))....))	chr10:103577977-103578294(-)$1	1	266	295	14.8627
..)))))))))).)))......)).))))	chrX:16888228-16888509(-)$1	1	148	177	14.8978
)).))))))))))..)))))..)))..))	chr19:19431112-19431418(-)$1	1	250	279	15.6095
))))))))))))))).)))......)).)	chr1:161719481-161719779(+)$1	1	225	254	14.5428
)))))))).)))))).)).))))))))))	chr3:49761082-49761449(-)$1	1	194	223	15.7405
)))))))))))))))))).))....))).	chr7:66119426-66119748(+)$1	1	151	180	14.7116
.).))))))))).))))).)))))...))	chr16:31044775-31045096(+)$1	1	101	130	17.4999
)).)))))))).))).)).))))...)))	chr17:75405656-75405957(+)$1	1	194	223	15.3415
))..))))))))))).)).)))))..)).	chr17:35306245-35306531(+)$1	1	250	279	13.6772
)).))))))))..)))))..))....)).	chr17:59940684-59940974(-)$1	1	249	278	16.8192
)))))))))))).)))))..))))).)))	chr2:170550880-170551213(+)$1	1	277	306	13.1785
).)))))))))).))))).))))))))))	chr21:46962180-46962443(-)$1	1	178	207	14.9371
....)).))))))))....))))...)))	chr2:183903038-183903299(-)$1	1	223	252	14.3525
)))))))))))))).))).))))......	chr3:49044728-49044977(+)$1	1	213	242	12.2311
)).)))))))))))).)).))))...)))	chr4:107237194-107237467(-)$1	1	206	235	19.0551
))))))))))))))).)..))))...)))	chr10:69834676-69835038(-)$1	1	159	188	13.8070
).))))))))))))).))))))).))...	chr5:87564430-87564742(-)$1	1	163	192	12.5199
)))))))))))))..))).))))..))))	chr3:182817117-182817403(-)$1	1	161	190	14.8164
))..)))))).))))).).)))).)))))	chr3:183353320-183353657(+)$1	1	271	300	13.0169
)))).)))))))))...)))))))..)))	chr6:24403074-24403370(+)$1	1	258	287	15.0924
)))))))))).).)....))).))))).(	chr2:70475527-70475809(-)$1	1	238	267	11.9177
...)))))).)))))...))))))..).)	chr6:31926564-31926839(-)$1	1	149	178	12.3468
))))))))))))))).))))..)).))))	chr16:23652706-23653017(+)$1	1	271	300	12.4676
)))))))))))...)))...))))).)))	chr4:106394979-106395315(-)$1	1	184	213	14.7173
)))))))))))))))...)))))...)))	chr3:121264630-121264938(-)$1	1	178	207	12.7877
)).)))))))...)))...)))).)).))	chr2:42720945-42721216(-)$1	1	206	235	13.9153
)))).))))))))))))))))))...).)	chr10:70883864-70884145(+)$1	1	194	223	13.9464
)))))).)))))))).)).))))...(((	chr14:39644349-39644646(+)$1	1	61	90	12.7484
)).)))).))).)))..).)))).).)))	chr1:93913590-93913890(+)$1	1	262	291	13.8650
...))))).)))))).)).).).)).)).	chr6:34664375-34664668(-)$1	1	215	244	12.6384
.))))))))).))))))).)))))).).)	chr11:67070896-67071214(+)$1	1	238	267	15.4917
)).).)))))))))).)))))).))))).	chr3:9439203-9439520(+)$1	1	269	298	14.0203
)))))))))))))).....))))..))))	chr19:1408284-1408543(+)$1	1	228	257	15.2792
)).))))))))))).)))))))))..)))	chr3:58522745-58523061(-)$1	1	189	218	13.1528
))))))))..)))))).)))))..).)))	chr1:52831645-52831937(-)$1	1	229	258	13.1239
.))))))))))))))))..)))).)).))	chr20:60757992-60758303(+)$1	1	269	298	17.2282
.))).).)))).)))....)))).))).)	chr6:35995485-35995738(+)$1	1	140	169	13.4444
)))))))))))))).))))))))...)))	chr19:57831779-57832060(+)$1	1	251	280	13.8379
)).))))))))))))....))).)).(((	chr8:142410574-142410865(+)$1	1	241	270	12.6289
.)))))))))).))).))..).)))))).	chr10:103113738-103114088(+)$1	1	277	306	13.1942
)).))))))).))))))...)))).))))	chr15:42783135-42783417(-)$1	1	194	223	12.7208
)).)))))))))..)))..))))..))))	chr16:28962289-28962578(+)$1	1	239	268	15.9845
)).))))))))))))))...))))).)..	chr2:219433493-219433799(+)$1	1	260	289	17.0442
)).))))).)))))))))))))).)))))	chr3:122785919-122786153(+)$1	1	181	210	12.7567
)).)))))))).)))))..)))))....)	chr12:107168311-107168688(+)$1	1	339	368	16.7892
))).))))))))))))).)))))......	chr19:57351900-57352150(-)$1	1	221	250	12.5930
))))))).)))))).))).))))).))))	chr3:184079417-184079701(+)$1	1	236	265	15.1459
)..))..)).))))).)..)))))...))	chr12:64845803-64846077(+)$1	1	211	240	13.3379
....))))))...)).)).))))....))	chr2:120770547-120770821(+)$1	1	165	194	15.4906

#PSSM
C : 0.11	F : 0.11	B : 0.09	D : 0.09	E : 0.08	: : 0.06	~ : 0.06	d : 0.06	I : 0.04	Z : 0.04	Y : 0.03	c : 0.03	H : 0.03	} : 0.03	A : 0.01	b : 0.01	J : 0.01	G : 0.01	
F : 0.14	B : 0.09	E : 0.08	C : 0.08	D : 0.08	I : 0.06	~ : 0.06	Y : 0.04	Z : 0.04	J : 0.04	d : 0.04	A : 0.03	} : 0.03	: : 0.03	H : 0.03	b : 0.01	c : 0.01	G : 0.01	
} : 0.26	F : 0.14	J : 0.09	I : 0.08	: : 0.06	Y : 0.04	~ : 0.04	H : 0.04	E : 0.03	Z : 0.03	A : 0.03	D : 0.03	C : 0.03	B : 0.01	c : 0.01	
J : 0.21	F : 0.18	I : 0.16	H : 0.13	E : 0.06	D : 0.04	A : 0.03	} : 0.03	~ : 0.03	Z : 0.01	Y : 0.01	: : 0.01	G : 0.01	C : 0.01	B : 0.01	
J : 0.22	F : 0.18	I : 0.16	H : 0.13	} : 0.08	D : 0.06	E : 0.04	G : 0.03	B : 0.03	A : 0.01	C : 0.01	
J : 0.22	F : 0.19	I : 0.18	H : 0.14	G : 0.06	E : 0.04	D : 0.03	A : 0.03	} : 0.01	C : 0.01	B : 0.01	Y : 0.01	
J : 0.24	F : 0.19	I : 0.18	H : 0.14	G : 0.08	} : 0.04	D : 0.03	E : 0.03	C : 0.01	Y : 0.01	
J : 0.24	H : 0.18	I : 0.16	F : 0.16	G : 0.08	E : 0.06	D : 0.03	} : 0.03	Y : 0.01	B : 0.01	
J : 0.24	F : 0.18	H : 0.14	I : 0.13	G : 0.08	Y : 0.04	} : 0.04	D : 0.03	E : 0.03	B : 0.03	C : 0.01	
J : 0.24	H : 0.14	F : 0.14	I : 0.13	G : 0.08	E : 0.06	Y : 0.04	D : 0.03	} : 0.03	C : 0.03	B : 0.01	A : 0.01	
J : 0.24	H : 0.13	E : 0.13	F : 0.13	I : 0.11	G : 0.06	} : 0.06	D : 0.03	Z : 0.03	C : 0.03	Y : 0.01	
J : 0.22	E : 0.16	} : 0.14	F : 0.09	I : 0.09	G : 0.04	H : 0.04	Z : 0.04	C : 0.03	B : 0.01	D : 0.01	? : 0.01	Y : 0.01	A : 0.01	
E : 0.19	C : 0.19	J : 0.18	} : 0.09	F : 0.08	B : 0.04	Y : 0.04	H : 0.04	Z : 0.04	? : 0.01	G : 0.01	I : 0.01	
C : 0.26	E : 0.22	B : 0.09	J : 0.09	Y : 0.08	F : 0.08	} : 0.03	H : 0.03	A : 0.03	? : 0.01	I : 0.01	Z : 0.01	
C : 0.29	E : 0.22	} : 0.09	B : 0.06	Y : 0.04	F : 0.04	J : 0.04	A : 0.03	D : 0.03	? : 0.03	H : 0.03	Z : 0.01	~ : 0.01	
} : 0.31	E : 0.19	C : 0.18	~ : 0.06	Z : 0.04	D : 0.03	? : 0.03	J : 0.03	F : 0.03	B : 0.01	A : 0.01	Y : 0.01	I : 0.01	
B : 0.26	E : 0.18	C : 0.16	~ : 0.06	Z : 0.06	D : 0.04	} : 0.04	A : 0.04	J : 0.03	_ : 0.01	Y : 0.01	? : 0.01	I : 0.01	F : 0.01	
B : 0.24	C : 0.13	E : 0.13	Y : 0.09	Z : 0.09	D : 0.06	~ : 0.06	A : 0.04	J : 0.03	_ : 0.01	F : 0.01	? : 0.01	I : 0.01	} : 0.01	
} : 0.36	Y : 0.14	E : 0.13	C : 0.08	Z : 0.06	D : 0.04	~ : 0.04	F : 0.03	_ : 0.01	B : 0.01	J : 0.01	? : 0.01	I : 0.01	
D : 0.45	E : 0.19	A : 0.04	C : 0.04	Y : 0.04	F : 0.04	Z : 0.04	_ : 0.03	B : 0.03	} : 0.01	I : 0.01	
D : 0.45	E : 0.19	} : 0.08	B : 0.04	F : 0.04	C : 0.04	A : 0.03	_ : 0.03	Y : 0.03	I : 0.01	
D : 0.45	E : 0.21	B : 0.06	F : 0.04	C : 0.04	~ : 0.03	_ : 0.03	Y : 0.03	} : 0.03	A : 0.01	I : 0.01	
D : 0.44	E : 0.21	B : 0.06	C : 0.06	F : 0.06	~ : 0.04	} : 0.04	_ : 0.01	I : 0.01	Y : 0.01	
E : 0.19	} : 0.18	Z : 0.13	~ : 0.09	Y : 0.08	B : 0.06	F : 0.06	C : 0.04	: : 0.04	D : 0.03	_ : 0.01	J : 0.01	I : 0.01	
Z : 0.16	Y : 0.14	~ : 0.11	E : 0.11	F : 0.11	B : 0.08	C : 0.06	} : 0.06	: : 0.04	A : 0.03	D : 0.01	_ : 0.01	J : 0.01	
Z : 0.16	F : 0.13	E : 0.11	} : 0.11	Y : 0.09	~ : 0.08	B : 0.08	D : 0.06	: : 0.06	C : 0.04	J : 0.01	H : 0.01	
D : 0.14	C : 0.14	F : 0.14	B : 0.11	E : 0.08	: : 0.06	~ : 0.06	A : 0.06	Y : 0.03	Z : 0.03	} : 0.03	J : 0.01	G : 0.01	c : 0.01	H : 0.01	
D : 0.18	C : 0.16	F : 0.14	} : 0.09	B : 0.09	: : 0.08	E : 0.08	c : 0.03	Y : 0.03	J : 0.01	G : 0.01	A : 0.01	H : 0.01	~ : 0.01	
D : 0.19	F : 0.16	C : 0.14	: : 0.06	} : 0.06	E : 0.06	B : 0.04	Y : 0.04	c : 0.03	f : 0.03	H : 0.03	G : 0.03	A : 0.03	J : 0.01	~ : 0.01	

#score	873.8701981363473
#seq	61
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_CDS_m2_run2.txt

#BEAR
ffffffooooooffffff:	chr2:32530569-32530825(+)$1	256	13	32	15.4794
fffff[annnnna]fffff	chr12:26571969-26572245(-)$1	276	3	22	11.2305
ffffffnnnnnffffff]c	chr6:24650832-24651120(-)$1	288	150	169	11.6823
ffffffooooooffffff:	chr6:122779583-122779835(-)$1	252	60	79	15.4794
ffffffooooooffffffc	chr20:31025023-31025331(+)$1	308	137	156	15.7425
ffffffooooooffffffE	chr2:88422456-88422677(-)$1	221	184	203	15.4582
ffffffooooooffffffH	chr4:120221390-120221606(-)$1	216	165	184	15.6402
ffffffooooooffffff2	chr3:149089373-149089621(-)$1	248	61	80	15.5739
ggggggooooooggggggg	chr5:133292406-133292656(-)$1	250	18	37	11.7390
ffffffooooooffffff:	chr13:45007957-45008213(-)$1	256	166	185	15.4794
ggggggooooooggggggg	chr4:57897000-57897294(+)$1	294	173	192	11.7390

#otherMatches

#Seq PSSM
ACAGUGCUGCUUCAUUGUU	chr2:32530569-32530825(+)$1	256	13	32	15.4794
CCAUGUCAAAAAGUCAUGG	chr12:26571969-26572245(-)$1	276	3	22	11.2305
UUUCCACCUUCUGGAAAGG	chr6:24650832-24651120(-)$1	288	150	169	11.6823
AGUGGAAACAACUCCACUG	chr6:122779583-122779835(-)$1	252	60	79	15.4794
ACAUUGUAUAUUUAGUGUG	chr20:31025023-31025331(+)$1	308	137	156	15.7425
UCAAUGCCUUUUCAUUGAU	chr2:88422456-88422677(-)$1	221	184	203	15.4582
uugcucgcuuuugggcggg	chr4:120221390-120221606(-)$1	216	165	184	15.6402
GGUGGAAUUGAAUUCAUCU	chr3:149089373-149089621(-)$1	248	61	80	15.5739
GUUCCAAAACAGUGGAAUA	chr5:133292406-133292656(-)$1	250	18	37	11.7390
UGAAAUUUAGUUGUUUCAU	chr13:45007957-45008213(-)$1	256	166	185	15.4794
AAGAUAAUUAAAUAUCUUG	chr4:57897000-57897294(+)$1	294	173	192	11.7390

#DB
((((((......)))))).	chr2:32530569-32530825(+)$1	1	13	32	15.4794
(((((.(.....).)))))	chr12:26571969-26572245(-)$1	1	3	22	11.2305
((((((.....)))))).)	chr6:24650832-24651120(-)$1	1	150	169	11.6823
((((((......)))))).	chr6:122779583-122779835(-)$1	1	60	79	15.4794
((((((......))))))(	chr20:31025023-31025331(+)$1	1	137	156	15.7425
((((((......)))))))	chr2:88422456-88422677(-)$1	1	184	203	15.4582
((((((......)))))))	chr4:120221390-120221606(-)$1	1	165	184	15.6402
((((((......)))))).	chr3:149089373-149089621(-)$1	1	61	80	15.5739
((((((......)))))))	chr5:133292406-133292656(-)$1	1	18	37	11.7390
((((((......)))))).	chr13:45007957-45008213(-)$1	1	166	185	15.4794
((((((......)))))))	chr4:57897000-57897294(+)$1	1	173	192	11.7390

#PSSM
f : 0.81	g : 0.18	
f : 0.81	g : 0.18	
f : 0.81	g : 0.18	
f : 0.81	g : 0.18	
f : 0.81	g : 0.18	
f : 0.72	g : 0.18	[ : 0.09	
o : 0.81	a : 0.09	n : 0.09	
o : 0.81	n : 0.18	
o : 0.81	n : 0.18	
o : 0.81	n : 0.18	
o : 0.81	n : 0.18	
o : 0.81	n : 0.09	f : 0.09	
f : 0.72	g : 0.18	a : 0.09	
f : 0.72	g : 0.18	] : 0.09	
f : 0.81	g : 0.18	
f : 0.81	g : 0.18	
f : 0.81	g : 0.18	
f : 0.72	g : 0.18	] : 0.09	
: : 0.27	c : 0.18	g : 0.18	f : 0.09	E : 0.09	H : 0.09	2 : 0.09	

#score	155.24449887376372
#seq	11
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_CDS_m1_run1.txt

#BEAR
h$$$$$eeeee[bb####ddddrrrrrrrrrdddd4444b	chr6:109702652-109702980(-)$1	328	248	288	15.6229
!!dddd!!ggggggg[a!!a!!cccnnnnnccc22a22a]	chr2:132044905-132045160(+)$1	255	137	177	18.4518
b!!eeeee[bb[dddd"""ccccccnnnnnccc4444ccc	chr11:63884847-63885097(-)$1	250	48	88	18.4453
dddd!!ggggggg%%%%%%dddd[annnnna]ddddgggg	chr11:66391277-66391538(+)$1	261	11	51	15.8886
e[============$$$$$ffffffmmmmffffff=====	chr10:70098854-70099084(+)$1	230	133	173	16.4533
ddd[bbdddd[ffffff!!ffffffnnnnnffffff333f	chr6:99848491-99848749(-)$1	258	86	126	16.5439
!!bb!!bb[a[eeeee"""ffffff^^^^^^^^^^^^^^^	chr1:90493047-90493348(+)$1	301	73	113	16.0576

#otherMatches

#Seq PSSM
UACGUAUCCUAAGGCUAAACUGGAAGGUAGGUAGUGAAAC	chr6:109702652-109702980(-)$1	328	248	288	15.6229
GGGCUGGUUUCUCCUCUUGGCCCUGCCCUACAGAUCAUAA	chr2:132044905-132045160(+)$1	255	137	177	18.4518
UUGGCGCCAUCACCCGUGGCCAUGGGGUAGUCAAUGUUGG	chr11:63884847-63885097(-)$1	250	48	88	18.4453
GGUGAGUUUGGGUUGAGAACACUGAAGAACUGAGUGAUCU	chr11:66391277-66391538(+)$1	261	11	51	15.8886
AAUAAAUAUUAAAGACAUUUUUAUUCAUAGGUAAAUUUUA	chr10:70098854-70099084(+)$1	230	133	173	16.4533
GUGGUUCUAUAUCUGUUAAAAUCAUAAGACAUGAUUCUAG	chr6:99848491-99848749(-)$1	258	86	126	16.5439
gaguaggggaaggaggggaaguagggguagugggagaagu	chr1:90493047-90493348(+)$1	301	73	113	16.0576

#DB
(.....(((((.((....((((.........))))....)	chr6:109702652-109702980(-)$1	1	248	288	15.6229
..((((..(((((((.(..(..(((.....)))..)..).	chr2:132044905-132045160(+)$1	1	137	177	18.4518
(..(((((.((.((((...((((((.....)))....)))	chr11:63884847-63885097(-)$1	1	48	88	18.4453
((((..(((((((......((((.(.....).))))))))	chr11:66391277-66391538(+)$1	1	11	51	15.8886
(.((((((((((((.....((((((....)))))))))))	chr10:70098854-70099084(+)$1	1	133	173	16.4533
(((.((((((.((((((..((((((.....))))))...)	chr6:99848491-99848749(-)$1	1	86	126	16.5439
..((..((.(.(((((...((((((...............	chr1:90493047-90493348(+)$1	1	73	113	16.0576

#PSSM
! : 0.28	d : 0.28	h : 0.14	b : 0.14	e : 0.14	
! : 0.42	d : 0.28	$ : 0.14	[ : 0.14	
d : 0.42	$ : 0.14	! : 0.14	= : 0.14	b : 0.14	
d : 0.28	$ : 0.14	e : 0.14	= : 0.14	[ : 0.14	b : 0.14	
! : 0.28	$ : 0.14	d : 0.14	e : 0.14	= : 0.14	b : 0.14	
! : 0.28	$ : 0.14	d : 0.14	e : 0.14	= : 0.14	b : 0.14	
e : 0.28	! : 0.14	g : 0.14	= : 0.14	d : 0.14	b : 0.14	
e : 0.28	! : 0.14	g : 0.14	= : 0.14	d : 0.14	b : 0.14	
g : 0.28	[ : 0.28	e : 0.14	= : 0.14	d : 0.14	
g : 0.28	e : 0.14	b : 0.14	= : 0.14	d : 0.14	a : 0.14	
g : 0.28	[ : 0.28	e : 0.14	b : 0.14	= : 0.14	
[ : 0.28	g : 0.28	= : 0.14	f : 0.14	e : 0.14	
g : 0.28	b : 0.14	d : 0.14	= : 0.14	f : 0.14	e : 0.14	
b : 0.14	g : 0.14	d : 0.14	% : 0.14	= : 0.14	f : 0.14	e : 0.14	
# : 0.14	g : 0.14	d : 0.14	% : 0.14	$ : 0.14	f : 0.14	e : 0.14	
# : 0.14	[ : 0.14	d : 0.14	% : 0.14	$ : 0.14	f : 0.14	e : 0.14	
" : 0.28	# : 0.14	a : 0.14	% : 0.14	$ : 0.14	f : 0.14	
! : 0.28	" : 0.28	# : 0.14	% : 0.14	$ : 0.14	
! : 0.28	" : 0.28	d : 0.14	% : 0.14	$ : 0.14	
f : 0.42	d : 0.28	a : 0.14	c : 0.14	
f : 0.42	d : 0.28	! : 0.14	c : 0.14	
f : 0.42	d : 0.28	! : 0.14	c : 0.14	
f : 0.42	c : 0.28	r : 0.14	d : 0.14	
f : 0.42	c : 0.28	r : 0.14	[ : 0.14	
f : 0.42	c : 0.28	r : 0.14	a : 0.14	
n : 0.57	r : 0.14	m : 0.14	^ : 0.14	
n : 0.57	r : 0.14	m : 0.14	^ : 0.14	
n : 0.57	r : 0.14	m : 0.14	^ : 0.14	
n : 0.57	r : 0.14	m : 0.14	^ : 0.14	
n : 0.57	r : 0.14	f : 0.14	^ : 0.14	
c : 0.28	f : 0.28	r : 0.14	a : 0.14	^ : 0.14	
c : 0.28	f : 0.28	d : 0.14	] : 0.14	^ : 0.14	
d : 0.28	c : 0.28	f : 0.28	^ : 0.14	
d : 0.28	f : 0.28	2 : 0.14	4 : 0.14	^ : 0.14	
d : 0.28	f : 0.28	2 : 0.14	4 : 0.14	^ : 0.14	
4 : 0.28	a : 0.14	d : 0.14	= : 0.14	f : 0.14	^ : 0.14	
4 : 0.28	2 : 0.14	g : 0.14	= : 0.14	3 : 0.14	^ : 0.14	
4 : 0.14	2 : 0.14	c : 0.14	g : 0.14	= : 0.14	3 : 0.14	^ : 0.14	
4 : 0.14	a : 0.14	c : 0.14	g : 0.14	= : 0.14	3 : 0.14	^ : 0.14	
b : 0.14	] : 0.14	c : 0.14	g : 0.14	= : 0.14	f : 0.14	^ : 0.14	

#score	117.46374182678565
#seq	7
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_CDS_m3_run2.txt

#BEAR
ggggggoooooogggggg	chr2:234399551-234399834(-)$1	283	13	31	11.2080
eee[bboooooobb]eee	chr3:9516639-9516888(+)$1	249	205	223	11.6654
a[ddddoooooodddd]a	chr1:156220660-156220918(-)$1	258	232	250	10.9371
ee!!bboooooobb22ee	chr16:31199527-31199815(+)$1	288	41	59	10.7957
hhhhhhoooooohhhhhh	chr2:32688131-32688400(+)$1	269	47	65	9.2936
f[ddddoooooodddd22	chr17:30700310-30700570(+)$1	260	64	82	10.4846
bb[cccooooooccc]bb	chrX:70753076-70753285(+)$1	209	85	103	9.7596
iieeeeeooooooeeeee	chr13:52730230-52730491(-)$1	261	180	198	9.6286
#eeeeeooooooeeeee3	chr5:95226590-95226859(-)$1	269	72	90	11.3352
ffffffooooooffffff	chr3:9475866-9476144(+)$1	278	162	180	10.5374
ee!!bboooooobb22ee	chr13:113508486-113508704(+)$1	218	63	81	10.7957
!!ddddoooooodddd22	chr7:100146324-100146580(+)$1	256	8	26	10.5698
""ddddoooooodddd]e	chr17:57915602-57915855(+)$1	253	228	246	10.8887
eee[bboooooobb]eee	chr11:64535639-64535881(-)$1	242	14	32	11.6654
ffffffooooooffffff	chr20:54970466-54970716(+)$1	250	115	133	10.5374
ffffffooooooffffff	chr1:97278472-97278745(+)$1	273	169	187	10.5374
a[bbbboooooobb]bb]	chr20:43559245-43559494(+)$1	249	13	31	10.0316
fffffaooooooa]ffff	chr2:162017184-162017461(+)$1	277	99	117	10.7159
eeecccoooooocccccc	chr20:33342511-33342774(-)$1	263	206	224	10.9755
deeeeeooooooeeeee]	chr11:46439456-46439728(-)$1	272	209	227	11.3142
b[ddddoooooodddd]b	chr16:68324158-68324515(+)$1	357	187	205	10.5216
:eeeeeooooooeeeeee	chr16:28890304-28890554(+)$1	250	4	22	10.4916
dddcccooooooccceee	chr11:85375353-85375635(-)$1	282	171	189	10.9768
ffffffooooooffffff	chr4:184192116-184192372(+)$1	256	182	200	10.5374
gggg[aooooooa]gggg	chr13:97995159-97995435(+)$1	276	120	138	11.1878
ggggggoooooogggggg	chr2:63175281-63175540(+)$1	259	174	192	11.2080
:ddddaooooooa]dddd	chr2:186653530-186653788(-)$1	258	65	83	9.7833
ffffffooooooffffff	chr16:24741464-24741715(+)$1	251	220	238	10.5374
hhhhhhoooooohhhhhh	chr5:78915707-78915971(+)$1	264	138	156	9.2936
eee[bboooooobb]eee	chr14:24031628-24031901(-)$1	273	49	67	11.6654
:eeeeeooooooeeeeee	chr1:111990072-111990319(-)$1	247	74	92	10.4916
%ddddaooooooa]dddd	chr17:27074099-27074375(+)$1	276	85	103	10.0714
[eeeeeooooooeeeee]	chr14:35482901-35483162(+)$1	261	6	24	11.5702
eee[bboooooobbeeee	chr7:97498311-97498607(-)$1	296	102	120	11.5643
ffffffooooooffffff	chr6:108242981-108243228(-)$1	247	20	38	10.5374
ffffbboooooobb]fff	chr1:154227205-154227460(+)$1	255	110	128	10.9201
##ddddoooooodddd]c	chr1:153617423-153617730(+)$1	307	9	27	10.7556
bbddddoooooodddd]b	chr8:145580650-145580937(-)$1	287	219	237	10.1079
eeeebboooooobb]eee	chr17:36873021-36873269(+)$1	248	206	224	11.5757
cc!!bboooooobb]ccc	chr5:131046166-131046463(-)$1	297	10	28	10.9960
ffffffooooooffffff	chr1:17960931-17961182(+)$1	251	118	136	10.5374
[eeeeeooooooeeeee]	chr8:17824470-17824751(+)$1	281	62	80	11.5702
[eeeeeooooooeeeee]	chr2:61450283-61450535(-)$1	252	17	35	11.5702
[bb[bboooooobb]bb]	chr6:43014715-43014961(-)$1	246	162	180	10.2131
iiiiiiooooooiiiiii	chr6:150048184-150048448(-)$1	264	146	164	11.0046
d[ddddoooooodddddd	chr17:73236351-73236603(-)$1	252	150	168	10.6125
ggggggoooooogggggg	chr10:86198143-86198403(+)$1	260	25	43	11.2080
h[ddddooooooddddhh	chr20:62572465-62572673(-)$1	208	30	48	10.5252
dddd[aooooooa]dddd	chr5:72850643-72850926(-)$1	283	236	254	10.5101
eeecccooooooccc]ee	chr2:238485809-238486130(-)$1	321	257	275	11.2001
[a!!bboooooobb]a]e	chr19:54972491-54972729(+)$1	238	204	222	11.2662
:eeeeeooooooeeeee:	chr10:101372206-101372467(-)$1	261	182	200	9.4616
ddd[bboooooobb]ddd	chr20:39985900-39986152(+)$1	252	16	34	10.8605
[eeeeeooooooeeeee]	chr9:95033802-95034066(-)$1	264	26	44	11.5702
d[ddddoooooodddd]d	chr7:30671753-30672004(+)$1	251	55	73	10.7844
ggggggoooooogggggg	chr6:145161784-145162017(+)$1	233	89	107	11.2080
ccc[bboooooobbcccg	chr21:33064603-33064863(-)$1	260	38	56	10.9119
ggggggoooooogggggg	chr2:54886921-54887189(+)$1	268	15	33	11.2080

#otherMatches

#Seq PSSM
AAGUCUCAGGUCAGACUU	chr2:234399551-234399834(-)$1	283	13	31	11.2080
GAUGAGAAAUUGCUGGUC	chr3:9516639-9516888(+)$1	249	205	223	11.6654
CACUGGACAACCCCAGCG	chr1:156220660-156220918(-)$1	258	232	250	10.9371
UUUUUUCCUGUUGACUAA	chr16:31199527-31199815(+)$1	288	41	59	10.7957
AAAUAUUUGAACAUGUUU	chr2:32688131-32688400(+)$1	269	47	65	9.2936
UGGGAACUGUUUUUCUAA	chr17:30700310-30700570(+)$1	260	64	82	10.4846
GUGGGCAACGUGGCCGAC	chrX:70753076-70753285(+)$1	209	85	103	9.7596
GUCCUGAGAAUGAUUGGG	chr13:52730230-52730491(-)$1	261	180	198	9.6286
GAUGGGCUGACUUUCAUA	chr5:95226590-95226859(-)$1	269	72	90	11.3352
UCGUUCUGACCUGAAUGG	chr3:9475866-9476144(+)$1	278	162	180	10.5374
CACUGACUUUUCUCUAUG	chr13:113508486-113508704(+)$1	218	63	81	10.7957
CUUAGUUUAUAUGCUAUU	chr7:100146324-100146580(+)$1	256	8	26	10.5698
ACAUUUUUAGGCAAAUAA	chr17:57915602-57915855(+)$1	253	228	246	10.8887
UGGUGAUUGAAUUCUUCA	chr11:64535639-64535881(-)$1	242	14	32	11.6654
AGGGAAACUGUCUUCCUU	chr20:54970466-54970716(+)$1	250	115	133	10.5374
GAAAGCAUUUAAGUUUUU	chr1:97278472-97278745(+)$1	273	169	187	10.5374
CUUGACCAACCAGUACAU	chr20:43559245-43559494(+)$1	249	13	31	10.0316
CCCGGCUGCUUUGCCCGG	chr2:162017184-162017461(+)$1	277	99	117	10.7159
AGGAGCCCCUCAGCUGCA	chr20:33342511-33342774(-)$1	263	206	224	10.9755
AGGGCUUGGCUUGGCCUA	chr11:46439456-46439728(-)$1	272	209	227	11.3142
AUGGGAAACCUCUCUCUU	chr16:68324158-68324515(+)$1	357	187	205	10.5216
ACUUGAUGAACCUCAAGG	chr16:28890304-28890554(+)$1	250	4	22	10.4916
GGCUGCUGAAAUGCAGCG	chr11:85375353-85375635(-)$1	282	171	189	10.9768
UUGCUUCCUUCCAAGCAA	chr4:184192116-184192372(+)$1	256	182	200	10.5374
CUGUAGGUCCCGCGAUAG	chr13:97995159-97995435(+)$1	276	120	138	11.1878
UAUUAGCAAUUCCUGAUA	chr2:63175281-63175540(+)$1	259	174	192	11.2080
UUGUCCUUUUAUGUGACA	chr2:186653530-186653788(-)$1	258	65	83	9.7833
CUUUUCUGGGUUGAGAAG	chr16:24741464-24741715(+)$1	251	220	238	10.5374
UGACAUAUGGAAAUGUCA	chr5:78915707-78915971(+)$1	264	138	156	9.2936
ggcuugagccaccaugcc	chr14:24031628-24031901(-)$1	273	49	67	11.6654
CCUUGGUAUAAUCCAAGC	chr1:111990072-111990319(-)$1	247	74	92	10.4916
CUUUCCCCUAAUGAGAAA	chr17:27074099-27074375(+)$1	276	85	103	10.0714
GUCUAAUUAGCUUUGGAG	chr14:35482901-35483162(+)$1	261	6	24	11.5702
UUUUCUCUCCAUAGAAAG	chr7:97498311-97498607(-)$1	296	102	120	11.5643
UAUUUUAAGUUCAAAAUA	chr6:108242981-108243228(-)$1	247	20	38	10.5374
GCUUCAGUUCUGUGCAGG	chr1:154227205-154227460(+)$1	255	110	128	10.9201
UCAGCUUUUCUCAGCUAG	chr1:153617423-153617730(+)$1	307	9	27	10.7556
GCUGACGCUCUGGUCAUG	chr8:145580650-145580937(-)$1	287	219	237	10.1079
GGGGCAGGUUAGUGACCC	chr17:36873021-36873269(+)$1	248	206	224	11.5757
GUCUGCUCUUGUGCUGCC	chr5:131046166-131046463(-)$1	297	10	28	10.9960
AACCACAGGUACGUGGUU	chr1:17960931-17961182(+)$1	251	118	136	10.5374
AUCCAGAAAAACCUGGAG	chr8:17824470-17824751(+)$1	281	62	80	11.5702
AAUCAACAAUUUUUGAUA	chr2:61450283-61450535(-)$1	252	17	35	11.5702
GCAGGGACUAUGCCGUGG	chr6:43014715-43014961(-)$1	246	162	180	10.2131
AUUAGUAACCAAGCUAAU	chr6:150048184-150048448(-)$1	264	146	164	11.0046
AGCUGGGAACAGCCAGUG	chr17:73236351-73236603(-)$1	252	150	168	10.6125
GUGAUUUGUAAUAAUCAC	chr10:86198143-86198403(+)$1	260	25	43	11.2080
GUGACGCACAGCCGUCCU	chr20:62572465-62572673(-)$1	208	30	48	10.5252
AUUGGGUAAGUUUGUAAU	chr5:72850643-72850926(-)$1	283	236	254	10.5101
UCUUCCACAGCAGGAGAG	chr2:238485809-238486130(-)$1	321	257	275	11.2001
CGCCGCCACACCGCACUG	chr19:54972491-54972729(+)$1	238	204	222	11.2662
ACCUAUCACUCUGUGGGC	chr10:101372206-101372467(-)$1	261	182	200	9.4616
CCCUCCCUUCCUGGUGGG	chr20:39985900-39986152(+)$1	252	16	34	10.8605
GUAUAUGUUACAAUAUAG	chr9:95033802-95034066(-)$1	264	26	44	11.5702
ACUGGGCUUAACUCCAUU	chr7:30671753-30672004(+)$1	251	55	73	10.7844
AGCGGGAGAGGACCUGCU	chr6:145161784-145162017(+)$1	233	89	107	11.2080
GUAAGCUACAGUGCUGCU	chr21:33064603-33064863(-)$1	260	38	56	10.9119
AUUUAAAAAGAAUUAAAU	chr2:54886921-54887189(+)$1	268	15	33	11.2080

#DB
((((((......))))))	chr2:234399551-234399834(-)$1	1	13	31	11.2080
(((.((......)).)))	chr3:9516639-9516888(+)$1	1	205	223	11.6654
(.((((......)))).)	chr1:156220660-156220918(-)$1	1	232	250	10.9371
((..((......))..))	chr16:31199527-31199815(+)$1	1	41	59	10.7957
((((((......))))))	chr2:32688131-32688400(+)$1	1	47	65	9.2936
(.((((......))))..	chr17:30700310-30700570(+)$1	1	64	82	10.4846
((.(((......))).))	chrX:70753076-70753285(+)$1	1	85	103	9.7596
))(((((......)))))	chr13:52730230-52730491(-)$1	1	180	198	9.6286
.(((((......))))).	chr5:95226590-95226859(-)$1	1	72	90	11.3352
((((((......))))))	chr3:9475866-9476144(+)$1	1	162	180	10.5374
((..((......))..))	chr13:113508486-113508704(+)$1	1	63	81	10.7957
..((((......))))..	chr7:100146324-100146580(+)$1	1	8	26	10.5698
..((((......)))).)	chr17:57915602-57915855(+)$1	1	228	246	10.8887
(((.((......)).)))	chr11:64535639-64535881(-)$1	1	14	32	11.6654
((((((......))))))	chr20:54970466-54970716(+)$1	1	115	133	10.5374
((((((......))))))	chr1:97278472-97278745(+)$1	1	169	187	10.5374
(.((((......)).)).	chr20:43559245-43559494(+)$1	1	13	31	10.0316
((((((......).))))	chr2:162017184-162017461(+)$1	1	99	117	10.7159
)))(((......)))(((	chr20:33342511-33342774(-)$1	1	206	224	10.9755
((((((......))))).	chr11:46439456-46439728(-)$1	1	209	227	11.3142
(.((((......)))).)	chr16:68324158-68324515(+)$1	1	187	205	10.5216
.(((((......)))))(	chr16:28890304-28890554(+)$1	1	4	22	10.4916
)))(((......)))(((	chr11:85375353-85375635(-)$1	1	171	189	10.9768
((((((......))))))	chr4:184192116-184192372(+)$1	1	182	200	10.5374
((((.(......).))))	chr13:97995159-97995435(+)$1	1	120	138	11.1878
((((((......))))))	chr2:63175281-63175540(+)$1	1	174	192	11.2080
.(((((......).))))	chr2:186653530-186653788(-)$1	1	65	83	9.7833
((((((......))))))	chr16:24741464-24741715(+)$1	1	220	238	10.5374
((((((......))))))	chr5:78915707-78915971(+)$1	1	138	156	9.2936
(((.((......)).)))	chr14:24031628-24031901(-)$1	1	49	67	11.6654
.(((((......)))))(	chr1:111990072-111990319(-)$1	1	74	92	10.4916
.(((((......).))))	chr17:27074099-27074375(+)$1	1	85	103	10.0714
.(((((......))))).	chr14:35482901-35483162(+)$1	1	6	24	11.5702
(((.((......))))))	chr7:97498311-97498607(-)$1	1	102	120	11.5643
((((((......))))))	chr6:108242981-108243228(-)$1	1	20	38	10.5374
((((((......)).)))	chr1:154227205-154227460(+)$1	1	110	128	10.9201
..((((......)))).)	chr1:153617423-153617730(+)$1	1	9	27	10.7556
((((((......)))).)	chr8:145580650-145580937(-)$1	1	219	237	10.1079
((((((......)).)))	chr17:36873021-36873269(+)$1	1	206	224	11.5757
((..((......)).)))	chr5:131046166-131046463(-)$1	1	10	28	10.9960
((((((......))))))	chr1:17960931-17961182(+)$1	1	118	136	10.5374
.(((((......))))).	chr8:17824470-17824751(+)$1	1	62	80	11.5702
.(((((......))))).	chr2:61450283-61450535(-)$1	1	17	35	11.5702
.((.((......)).)).	chr6:43014715-43014961(-)$1	1	162	180	10.2131
((((((......))))))	chr6:150048184-150048448(-)$1	1	146	164	11.0046
(.((((......))))))	chr17:73236351-73236603(-)$1	1	150	168	10.6125
((((((......))))))	chr10:86198143-86198403(+)$1	1	25	43	11.2080
(.((((......))))))	chr20:62572465-62572673(-)$1	1	30	48	10.5252
((((.(......).))))	chr5:72850643-72850926(-)$1	1	236	254	10.5101
((((((......))).))	chr2:238485809-238486130(-)$1	1	257	275	11.2001
.(..((......)).).)	chr19:54972491-54972729(+)$1	1	204	222	11.2662
.(((((......))))).	chr10:101372206-101372467(-)$1	1	182	200	9.4616
(((.((......)).)))	chr20:39985900-39986152(+)$1	1	16	34	10.8605
.(((((......))))).	chr9:95033802-95034066(-)$1	1	26	44	11.5702
(.((((......)))).)	chr7:30671753-30672004(+)$1	1	55	73	10.7844
((((((......))))))	chr6:145161784-145162017(+)$1	1	89	107	11.2080
(((.((......))))))	chr21:33064603-33064863(-)$1	1	38	56	10.9119
((((((......))))))	chr2:54886921-54887189(+)$1	1	15	33	11.2080

#PSSM
f : 0.17	e : 0.15	g : 0.10	d : 0.10	[ : 0.10	: : 0.06	h : 0.05	b : 0.05	a : 0.03	i : 0.03	# : 0.03	c : 0.03	! : 0.01	" : 0.01	% : 0.01	
e : 0.31	f : 0.15	[ : 0.12	g : 0.10	d : 0.08	b : 0.05	h : 0.03	i : 0.03	c : 0.03	! : 0.01	" : 0.01	# : 0.01	a : 0.01	
e : 0.29	d : 0.25	f : 0.15	g : 0.10	! : 0.06	h : 0.03	b : 0.03	[ : 0.01	i : 0.01	c : 0.01	
d : 0.22	e : 0.18	f : 0.15	[ : 0.12	g : 0.10	! : 0.06	c : 0.06	h : 0.03	b : 0.01	i : 0.01	
b : 0.24	d : 0.20	e : 0.17	f : 0.13	g : 0.08	c : 0.06	h : 0.03	[ : 0.03	i : 0.01	
b : 0.24	d : 0.17	e : 0.17	f : 0.12	g : 0.08	a : 0.08	c : 0.06	h : 0.03	i : 0.01	
o : 0.98	e : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
b : 0.24	d : 0.17	e : 0.15	f : 0.12	g : 0.08	a : 0.08	c : 0.06	h : 0.03	o : 0.01	i : 0.01	
b : 0.24	d : 0.17	e : 0.17	f : 0.12	g : 0.08	] : 0.08	c : 0.06	h : 0.03	i : 0.01	
d : 0.22	e : 0.18	] : 0.17	f : 0.13	g : 0.10	c : 0.08	2 : 0.03	h : 0.03	i : 0.01	
e : 0.27	d : 0.24	f : 0.15	g : 0.10	c : 0.05	2 : 0.03	h : 0.03	] : 0.03	b : 0.03	i : 0.01	a : 0.01	
e : 0.32	f : 0.15	] : 0.12	g : 0.10	d : 0.08	h : 0.05	b : 0.05	c : 0.05	2 : 0.03	i : 0.01	
e : 0.24	f : 0.15	g : 0.12	] : 0.12	d : 0.10	h : 0.05	b : 0.05	c : 0.05	2 : 0.03	a : 0.01	3 : 0.01	i : 0.01	: : 0.01	

#score	624.6946712784883
#seq	58
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_UTR_m3_run1.txt

#BEAR
c!!dddduuuuuuuuuuuudddd333	chr16:84214952-84215227(-)$1	275	98	124	24.3612
iii[cccuuuuuuuuuuuuccc]iii	chr17:80022847-80023098(-)$1	251	30	56	24.7352
iiiiiiiitttttttttttiiiiiii	chr17:7216900-7217189(-)$1	289	256	282	23.2956
[ccc[bbuuuuuuuuuuuubb]ccc]	chr5:140958641-140958921(-)$1	280	28	54	24.2319
!!eeeeettttttttttteeeeebb2	chr7:6054623-6054916(+)$1	293	192	218	22.7745
ggggggguuuuuuuuuuuuggggggg	chr17:76201841-76202135(+)$1	294	70	96	24.8103
cc[dddduuuuuuuuuuuuddddccc	chr1:249151991-249152220(-)$1	229	4	30	23.8169
fdddd[bbtttttttttttbbdddd:	chr3:9516634-9516877(+)$1	243	164	190	21.4159
ffffffwwwwwwwwwwwwwwffffff	chr12:57909770-57910010(+)$1	240	18	44	21.6766
eeeeewwwwwwwwwwwwwweeeeeii	chr17:48445548-48445875(-)$1	327	290	316	21.8757
gggggggtttttttttttggggggg3	chr6:158451270-158451554(+)$1	284	149	175	23.5721
e!!eeeeettttttttttteeeeeee	chr19:50162979-50163247(-)$1	268	173	199	23.5444
ggggggguuuuuuuuuuuuggggggg	chr12:123465959-123466237(+)$1	278	203	229	24.8103
hhhhhhhuuuuuuuuuuuuhhhhhhh	chr13:113769782-113770080(+)$1	298	4	30	22.2699
eeeeebbtttttttttttbb]eeeee	chr17:74381377-74381636(+)$1	259	17	43	22.5597
:gggggggtttttttttttggggggg	chr1:9781591-9781927(+)$1	336	195	221	22.8212
cceeeeeuuuuuuuuuuuueeeee22	chr7:72420634-72420893(-)$1	259	118	144	24.3207
bb[a[ccctttttttttttccc]a]b	chr14:21731917-21732156(-)$1	239	179	205	23.1371
cbbdddduuuuuuuuuuuudddd22b	chr10:69647037-69647286(+)$1	249	208	234	22.6279
:::dddduuuuuuuuuuuuddddddd	chr17:41006220-41006550(+)$1	330	24	50	20.2210
e!!dddduuuuuuuuuuuudddd22e	chr19:12781032-12781357(-)$1	325	46	72	23.6468
a[fffffftttttttttttffffff]	chr16:23478170-23478424(-)$1	254	30	56	23.2515
fffffffuuuuuuuuuuuuffffff>	chr20:57018983-57019254(+)$1	271	142	168	23.6036
####cccuuuuuuuuuuuuccc333b	chr12:132569364-132569643(+)$1	279	179	205	24.1699
ggggggguuuuuuuuuuuuggggggg	chr20:62599214-62599457(-)$1	243	90	116	24.8103
cceeeeeuuuuuuuuuuuueeeee]c	chr11:111171089-111171363(+)$1	274	150	176	24.3242
d####bbyyyyyyyyyyyyyyyybb4	chr16:8993507-8993770(-)$1	263	119	145	20.2898
ggggggbbtttttttttttbb22ggg	chr5:172353313-172353615(+)$1	302	73	99	23.2338
b"""ccctttttttttttccc22bb2	chr19:39440859-39441125(-)$1	266	105	131	22.2174
!ccc[bbuuuuuuuuuuuubb]ccc2	chr22:38014334-38014578(+)$1	244	68	94	24.1299
dd[eeeeettttttttttteeeeedd	chr7:65439589-65439841(-)$1	252	210	236	23.0179
[ddddbbwwwwwwwwwwwwwwbb]dd	chr14:24651511-24651771(-)$1	260	150	176	20.7716
eeee[ccctttttttttttccc]eee	chr11:70266344-70266599(+)$1	255	227	253	23.7036
c[eeeeeuuuuuuuuuuuueeeee]c	chr3:184033766-184034000(+)$1	234	133	159	24.4244
e!!bb[atttttttttttabb22eee	chr19:15514398-15514683(-)$1	285	223	249	22.5427
f[eeeeevvvvvvvvvvvvveeeee2	chr11:62609026-62609260(-)$1	234	130	156	23.5587
eeeeeyyyyyyyyyyyyyyyyeeeee	chr5:179047901-179048143(-)$1	242	56	82	21.5029
cceeeeeuuuuuuuuuuuueeeee22	chr17:79575743-79576036(-)$1	293	239	265	24.3207
eccc[ccctttttttttttcccccc]	chr14:24733285-24733724(-)$1	439	144	170	23.9435
[ffffffuuuuuuuuuuuuffffff]	chr19:47287286-47287561(-)$1	275	75	101	24.0851
[ffffffuuuuuuuuuuuuffffff]	chr13:111545497-111545780(-)$1	283	56	82	24.0851
ggggggguuuuuuuuuuuuggggggg	chr17:78195158-78195392(+)$1	234	78	104	24.8103
ddd[cccvvvvvvvvvvvvvccc]dd	chr2:242441024-242441283(-)$1	259	98	124	22.8968
ffffddddtttttttttttdddd22f	chr16:30016433-30016690(+)$1	257	2	28	22.4009
[ffffffvvvvvvvvvvvvvffffff	chr17:55187217-55187490(+)$1	273	144	170	23.0149
dddd[bbuuuuuuuuuuuubbdddd:	chr8:145650434-145650681(-)$1	247	54	80	22.2952
ee!!cccuuuuuuuuuuuuccc22ee	chr2:131102992-131103266(+)$1	274	120	146	24.1591
hhhhhhwwwwwwwwwwwwwwhhhhhh	chr16:3713472-3713722(-)$1	250	188	214	20.5632
fffff[avvvvvvvvvvvvva]ffff	chr1:155718037-155718284(+)$1	247	200	226	23.0399
eeeeeeettttttttttteeeee333	chr11:47189692-47189999(-)$1	307	252	278	23.3159
ccc!!bbuuuuuuuuuuuubb22ccc	chr11:64009700-64009965(+)$1	265	43	69	23.6336
ff[ddddwwwwwwwwwwwwwwdddd]	chr19:17313793-17314120(+)$1	327	110	136	21.7692
!!fffffftttttttttttffffff2	chr10:133770816-133771057(+)$1	241	138	164	23.3092
ff!!cccwwwwwwwwwwwwwwccc33	chr11:71712675-71712943(+)$1	268	167	193	22.6982
cgggggggtttttttttttggggggg	chr9:139342031-139342313(-)$1	282	143	169	23.8158
!gggggggtttttttttttggggggg	chr3:52019198-52019477(+)$1	279	125	151	23.9014
#ccc[bbtttttttttttbb]cccff	chr2:95756165-95756455(-)$1	290	166	192	22.5654

#otherMatches

#Seq PSSM
CCCUUGAGCCCCUUCCCCAUCAGCCU	chr16:84214952-84215227(-)$1	275	98	124	24.3612
GCCCCCGCGUGUGACCCAACGGUGGU	chr17:80022847-80023098(-)$1	251	30	56	24.7352
CUAUGGGCCCACACAGCCAGCUUAUA	chr17:7216900-7217189(-)$1	289	256	282	23.2956
AUGUGAGAAAUCCGGAACACUGAUAA	chr5:140958641-140958921(-)$1	280	28	54	24.2319
CAAGAUGAUAUUUUAAAACGUCUGUA	chr7:6054623-6054916(+)$1	293	192	218	22.7745
ucauuuauuuaacacguacugaguga	chr17:76201841-76202135(+)$1	294	70	96	24.8103
GACGGCCUGUGUGACUUGUGGCCUCC	chr1:249151991-249152220(-)$1	229	4	30	23.8169
AAAGGAGCAACAGUUUACAGCCCUUC	chr3:9516634-9516877(+)$1	243	164	190	21.4159
GGCUGUGCCCUCGCUCCACAACAGCC	chr12:57909770-57910010(+)$1	240	18	44	21.6766
GCCUCAUCCCAGAAACACGGAGGCUG	chr17:48445548-48445875(-)$1	327	290	316	21.8757
UGCCUCUCUCCCUUUGCCAGAGGCAG	chr6:158451270-158451554(+)$1	284	149	175	23.5721
UCAGGGCCUUGGUAGAAAUGGCCCGG	chr19:50162979-50163247(-)$1	268	173	199	23.5444
GGAGGAGAACAAGAUCCAGcuccucc	chr12:123465959-123466237(+)$1	278	203	229	24.8103
UGAUCCACGCCUUGUCCUUUGGAUCA	chr13:113769782-113770080(+)$1	298	4	30	22.2699
CGGAGGCACCGGACCUCAGCUCUCUG	chr17:74381377-74381636(+)$1	259	17	43	22.5597
UGGUGAGGCUCAGCCCUCCCUUCACC	chr1:9781591-9781927(+)$1	336	195	221	22.8212
AAAUUCAGGAAAUGAUGAAUGAAUGG	chr7:72420634-72420893(-)$1	259	118	144	24.3207
GAACCCCAUCCCUACUCACUGGAGCU	chr14:21731917-21732156(-)$1	239	179	205	23.1371
GCCUCACAUGCAAGCUCUAGUGACUG	chr10:69647037-69647286(+)$1	249	208	234	22.6279
AAUGAGUGAAAUGGAAUGAACUCCCU	chr17:41006220-41006550(+)$1	330	24	50	20.2210
CAGUGUCGGUUAAAGCAAGGGCGAAG	chr19:12781032-12781357(-)$1	325	46	72	23.6468
CCUUGUCUCCAUUUUCAUUAGACAAU	chr16:23478170-23478424(-)$1	254	30	56	23.2515
CCCGUAGGAAGAAGAUGGACUGCGGA	chr20:57018983-57019254(+)$1	271	142	168	23.6036
CUCUGCCUCUUGACCCCUUGGCCCCG	chr12:132569364-132569643(+)$1	279	179	205	24.1699
GCCUCACCACGUGUUCCAAGUGGGGC	chr20:62599214-62599457(-)$1	243	90	116	24.8103
GCCUUUCUCCAGAAAAACCGAAGGUG	chr11:111171089-111171363(+)$1	274	150	176	24.3242
ACUUUGAUUCAGACUGCAAACUUUCU	chr16:8993507-8993770(-)$1	263	119	145	20.2898
GAGCCCCCUUUUACACAUUGGUAGGG	chr5:172353313-172353615(+)$1	302	73	99	23.2338
GCCUGGCUGCGCUGACCCGCCUACCG	chr19:39440859-39441125(-)$1	266	105	131	22.2174
CACGGCCUCUGAUGCACCUGGGCGUC	chr22:38014334-38014578(+)$1	244	68	94	24.1299
CUUGGUGCCAACGCUUUCCGUACCAG	chr7:65439589-65439841(-)$1	252	210	236	23.0179
CUGGCUCCACAGGCUGAAUACGACGC	chr14:24651511-24651771(-)$1	260	150	176	20.7716
GCUGGGAUCACCAGGAGAAAUUGCAG	chr11:70266344-70266599(+)$1	255	227	253	23.7036
CUCUGGUCUCCCCUCUUCAGCCAGCG	chr3:184033766-184034000(+)$1	234	133	159	24.4244
UGGCCACUUCACACUCUUGGGAAAUG	chr19:15514398-15514683(-)$1	285	223	249	22.5427
gaccugguauugcaguacuuccagga	chr11:62609026-62609260(-)$1	234	130	156	23.5587
ACUUUGUUAUCUAAUUUUCCAAAAGU	chr5:179047901-179048143(-)$1	242	56	82	21.5029
UCCUUCCACGCCUACAUCCGGAAGCU	chr17:79575743-79576036(-)$1	293	239	265	24.3207
GGGCUCCCUGCCAGUUCCUGGGGCCU	chr14:24733285-24733724(-)$1	439	144	170	23.9435
gcaggcuuugagcauuguuagcUUGG	chr19:47287286-47287561(-)$1	275	75	101	24.0851
CUAUGAAUUUGUUUACUCUUUCAUAC	chr13:111545497-111545780(-)$1	283	56	82	24.0851
AGGGGAGACCCAUAGUGACCUCUCCU	chr17:78195158-78195392(+)$1	234	78	104	24.8103
GCCUGUCCCCCGCCUCUUGUGACCGG	chr2:242441024-242441283(-)$1	259	98	124	22.8968
GGGCCUCUUCCCCCUCCCCAGAGCUG	chr16:30016433-30016690(+)$1	257	2	28	22.4009
UGCCUGCUGCUUCUUCCCCUGCAGGU	chr17:55187217-55187490(+)$1	273	144	170	23.0149
GAGCUACAAGCCCCACUACGUGCUCA	chr8:145650434-145650681(-)$1	247	54	80	22.2952
UGACUGUACACUGCCAUCCACGCCCA	chr2:131102992-131103266(+)$1	274	120	146	24.1591
GCUCACCCUGCUGCACCUUCGUGAGU	chr16:3713472-3713722(-)$1	250	188	214	20.5632
CACAGUCACUGUUCCUUAUCGCCUGU	chr1:155718037-155718284(+)$1	247	200	226	23.0399
GUGAGUGCAAAAUCCUCUCGCUCGCA	chr11:47189692-47189999(-)$1	307	252	278	23.3159
CCGGGGCAAGGAAGAUACAGUGGCGG	chr11:64009700-64009965(+)$1	265	43	69	23.6336
GGGAGGGCUGCCUUCCCCUUUCCCUG	chr19:17313793-17314120(+)$1	327	110	136	21.7692
AAGGUGUGUGCUGAUUCCUCAUGCCC	chr10:133770816-133771057(+)$1	241	138	164	23.3092
CAACCUUGCCCCCCACCCAAGAAGCC	chr11:71712675-71712943(+)$1	268	167	193	22.6982
CACACAGUGGGUGUCUGAAGCUGUGU	chr9:139342031-139342313(-)$1	282	143	169	23.8158
CCUGGGCACUUCCUCACCCUGCUCAG	chr3:52019198-52019477(+)$1	279	125	151	23.9014
CACCCGGUUUCUCCUUUUCUAGGUUA	chr2:95756165-95756455(-)$1	290	166	192	22.5654

#DB
(..((((............))))...	chr16:84214952-84215227(-)$1	1	98	124	24.3612
(((.(((............))).)))	chr17:80022847-80023098(-)$1	1	30	56	24.7352
((((((((...........)))))))	chr17:7216900-7217189(-)$1	1	256	282	23.2956
.(((.((............)).))).	chr5:140958641-140958921(-)$1	1	28	54	24.2319
..(((((...........))))))).	chr7:6054623-6054916(+)$1	1	192	218	22.7745
(((((((............)))))))	chr17:76201841-76202135(+)$1	1	70	96	24.8103
((.((((............)))))))	chr1:249151991-249152220(-)$1	1	4	30	23.8169
)((((.((...........)))))).	chr3:9516634-9516877(+)$1	1	164	190	21.4159
((((((..............))))))	chr12:57909770-57910010(+)$1	1	18	44	21.6766
(((((..............)))))))	chr17:48445548-48445875(-)$1	1	290	316	21.8757
(((((((...........))))))).	chr6:158451270-158451554(+)$1	1	149	175	23.5721
(..(((((...........)))))))	chr19:50162979-50163247(-)$1	1	173	199	23.5444
(((((((............)))))))	chr12:123465959-123466237(+)$1	1	203	229	24.8103
(((((((............)))))))	chr13:113769782-113770080(+)$1	1	4	30	22.2699
(((((((...........)).)))))	chr17:74381377-74381636(+)$1	1	17	43	22.5597
.(((((((...........)))))))	chr1:9781591-9781927(+)$1	1	195	221	22.8212
(((((((............)))))..	chr7:72420634-72420893(-)$1	1	118	144	24.3207
((.(.(((...........))).).)	chr14:21731917-21732156(-)$1	1	179	205	23.1371
(((((((............))))..)	chr10:69647037-69647286(+)$1	1	208	234	22.6279
...((((............))))(((	chr17:41006220-41006550(+)$1	1	24	50	20.2210
(..((((............))))..)	chr19:12781032-12781357(-)$1	1	46	72	23.6468
(.((((((...........)))))).	chr16:23478170-23478424(-)$1	1	30	56	23.2515
(((((((............)))))).	chr20:57018983-57019254(+)$1	1	142	168	23.6036
....(((............)))...)	chr12:132569364-132569643(+)$1	1	179	205	24.1699
(((((((............)))))))	chr20:62599214-62599457(-)$1	1	90	116	24.8103
(((((((............))))).)	chr11:111171089-111171363(+)$1	1	150	176	24.3242
(....((................)).	chr16:8993507-8993770(-)$1	1	119	145	20.2898
((((((((...........))..)))	chr5:172353313-172353615(+)$1	1	73	99	23.2338
(...(((...........)))..)).	chr19:39440859-39441125(-)$1	1	105	131	22.2174
.(((.((............)).))).	chr22:38014334-38014578(+)$1	1	68	94	24.1299
((.(((((...........)))))))	chr7:65439589-65439841(-)$1	1	210	236	23.0179
.((((((..............)).))	chr14:24651511-24651771(-)$1	1	150	176	20.7716
((((.(((...........))).)))	chr11:70266344-70266599(+)$1	1	227	253	23.7036
(.(((((............))))).)	chr3:184033766-184034000(+)$1	1	133	159	24.4244
(..((.(...........)))..)))	chr19:15514398-15514683(-)$1	1	223	249	22.5427
(.(((((.............))))).	chr11:62609026-62609260(-)$1	1	130	156	23.5587
(((((................)))))	chr5:179047901-179048143(-)$1	1	56	82	21.5029
(((((((............)))))..	chr17:79575743-79576036(-)$1	1	239	265	24.3207
((((.(((...........)))))).	chr14:24733285-24733724(-)$1	1	144	170	23.9435
.((((((............)))))).	chr19:47287286-47287561(-)$1	1	75	101	24.0851
.((((((............)))))).	chr13:111545497-111545780(-)$1	1	56	82	24.0851
(((((((............)))))))	chr17:78195158-78195392(+)$1	1	78	104	24.8103
(((.(((.............))).))	chr2:242441024-242441283(-)$1	1	98	124	22.8968
((((((((...........))))..)	chr16:30016433-30016690(+)$1	1	2	28	22.4009
.((((((.............))))))	chr17:55187217-55187490(+)$1	1	144	170	23.0149
((((.((............)))))).	chr8:145650434-145650681(-)$1	1	54	80	22.2952
((..(((............)))..))	chr2:131102992-131103266(+)$1	1	120	146	24.1591
((((((..............))))))	chr16:3713472-3713722(-)$1	1	188	214	20.5632
(((((.(.............).))))	chr1:155718037-155718284(+)$1	1	200	226	23.0399
(((((((...........)))))...	chr11:47189692-47189999(-)$1	1	252	278	23.3159
(((..((............))..)))	chr11:64009700-64009965(+)$1	1	43	69	23.6336
((.((((..............)))).	chr19:17313793-17314120(+)$1	1	110	136	21.7692
..((((((...........)))))).	chr10:133770816-133771057(+)$1	1	138	164	23.3092
((..(((..............)))..	chr11:71712675-71712943(+)$1	1	167	193	22.6982
((((((((...........)))))))	chr9:139342031-139342313(-)$1	1	143	169	23.8158
.(((((((...........)))))))	chr3:52019198-52019477(+)$1	1	125	151	23.9014
.(((.((...........)).)))))	chr2:95756165-95756455(-)$1	1	166	192	22.5654

#PSSM
e : 0.17	c : 0.15	f : 0.14	g : 0.10	[ : 0.08	! : 0.07	d : 0.07	i : 0.03	h : 0.03	: : 0.03	b : 0.03	# : 0.03	a : 0.01	
c : 0.15	g : 0.15	f : 0.15	! : 0.10	e : 0.10	d : 0.08	[ : 0.05	i : 0.03	h : 0.03	b : 0.03	# : 0.03	: : 0.01	" : 0.01	
e : 0.19	g : 0.15	f : 0.15	! : 0.10	c : 0.08	[ : 0.07	d : 0.07	i : 0.03	h : 0.03	# : 0.03	b : 0.01	: : 0.01	" : 0.01	
e : 0.22	d : 0.15	g : 0.15	f : 0.15	c : 0.07	! : 0.05	[ : 0.03	h : 0.03	# : 0.03	i : 0.01	a : 0.01	" : 0.01	b : 0.01	
e : 0.21	d : 0.15	g : 0.15	f : 0.14	[ : 0.12	c : 0.10	h : 0.03	i : 0.01	# : 0.01	b : 0.01	! : 0.01	
c : 0.15	e : 0.15	g : 0.15	b : 0.14	d : 0.12	f : 0.12	[ : 0.05	h : 0.03	i : 0.01	w : 0.01	y : 0.01	
b : 0.17	c : 0.15	e : 0.15	g : 0.14	d : 0.12	f : 0.10	w : 0.05	a : 0.03	i : 0.01	h : 0.01	y : 0.01	
u : 0.42	t : 0.12	w : 0.10	v : 0.07	g : 0.05	c : 0.05	b : 0.03	e : 0.03	f : 0.03	y : 0.03	i : 0.01	d : 0.01	
u : 0.42	t : 0.36	w : 0.10	v : 0.07	y : 0.03	
u : 0.42	t : 0.36	w : 0.10	v : 0.07	y : 0.03	
u : 0.42	t : 0.36	w : 0.10	v : 0.07	y : 0.03	
u : 0.42	t : 0.36	w : 0.10	v : 0.07	y : 0.03	
u : 0.42	t : 0.36	w : 0.10	v : 0.07	y : 0.03	
u : 0.42	t : 0.36	w : 0.10	v : 0.07	y : 0.03	
u : 0.42	t : 0.36	w : 0.10	v : 0.07	y : 0.03	
u : 0.42	t : 0.36	w : 0.10	v : 0.07	y : 0.03	
u : 0.42	t : 0.36	w : 0.10	v : 0.07	y : 0.03	
u : 0.42	t : 0.36	w : 0.10	v : 0.07	y : 0.03	
u : 0.42	t : 0.24	w : 0.10	v : 0.07	e : 0.03	b : 0.03	y : 0.03	g : 0.01	c : 0.01	a : 0.01	
b : 0.15	e : 0.15	g : 0.14	c : 0.12	d : 0.10	w : 0.08	f : 0.08	v : 0.07	y : 0.03	i : 0.01	h : 0.01	
e : 0.17	c : 0.14	g : 0.14	b : 0.12	f : 0.12	d : 0.10	w : 0.05	h : 0.03	] : 0.03	y : 0.03	i : 0.01	a : 0.01	
e : 0.21	d : 0.15	c : 0.15	g : 0.14	f : 0.12	2 : 0.07	] : 0.05	h : 0.03	i : 0.01	y : 0.01	b : 0.01	
e : 0.21	d : 0.15	g : 0.14	f : 0.14	c : 0.10	2 : 0.08	] : 0.05	h : 0.03	i : 0.01	3 : 0.01	y : 0.01	b : 0.01	
e : 0.21	g : 0.15	f : 0.14	c : 0.12	d : 0.07	2 : 0.07	3 : 0.05	b : 0.05	i : 0.03	h : 0.03	] : 0.03	a : 0.01	
g : 0.15	f : 0.15	d : 0.12	e : 0.12	c : 0.08	2 : 0.08	3 : 0.07	i : 0.05	b : 0.05	] : 0.05	h : 0.03	
g : 0.14	2 : 0.12	e : 0.12	] : 0.10	f : 0.08	3 : 0.07	c : 0.07	d : 0.07	i : 0.05	b : 0.05	: : 0.03	h : 0.03	> : 0.01	4 : 0.01	

#score	1320.703531755718
#seq	57
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF656IDO_XRCC6_UTR_m3_run1.txt

#BEAR
:ffffff"""ccc[a[===========####ffffff[ff	chr10:103606793-103607043(-)$1	250	46	86	22.0839
eegggggggeeeee!!bb[bb!!dddd"""ffffff[ccc	chr6:30711093-30711367(-)$1	274	141	181	23.3681
dd!!ffffff%%%%%%bb[ccc[dddd####eeeee[bbb	chr2:85546249-85546464(-)$1	215	55	95	24.0106

#otherMatches

#Seq PSSM
UGAGGUUACAAGCUGUAGCUACUGACUAAUUUUCGGGAGC	chr10:103606793-103607043(-)$1	250	46	86	22.0839
AUGAAGUCUGGUGGUGGGUCGUAAGUUUAGGAGGUGACUG	chr6:30711093-30711367(-)$1	274	141	181	23.3681
agaauugcuugaauccgggaggcggagguugcagugagcc	chr2:85546249-85546464(-)$1	215	55	95	24.0106

#DB
.((((((...(((.(.(((((((((((....((((((.((	chr10:103606793-103607043(-)$1	1	46	86	22.0839
))((((((((((((..((.((..((((...((((((.(((	chr6:30711093-30711367(-)$1	1	141	181	23.3681
((..((((((......((.(((.((((....(((((.(((	chr2:85546249-85546464(-)$1	1	55	95	24.0106

#PSSM
: : 0.33	e : 0.33	d : 0.33	
f : 0.33	e : 0.33	d : 0.33	
f : 0.33	g : 0.33	! : 0.33	
f : 0.33	g : 0.33	! : 0.33	
f : 0.66	g : 0.33	
f : 0.66	g : 0.33	
f : 0.66	g : 0.33	
" : 0.33	g : 0.33	f : 0.33	
" : 0.33	g : 0.33	f : 0.33	
" : 0.33	e : 0.33	f : 0.33	
c : 0.33	e : 0.33	% : 0.33	
c : 0.33	e : 0.33	% : 0.33	
c : 0.33	e : 0.33	% : 0.33	
[ : 0.33	e : 0.33	% : 0.33	
a : 0.33	! : 0.33	% : 0.33	
[ : 0.33	! : 0.33	% : 0.33	
b : 0.66	= : 0.33	
b : 0.66	= : 0.33	
[ : 0.66	= : 0.33	
= : 0.33	b : 0.33	c : 0.33	
= : 0.33	b : 0.33	c : 0.33	
= : 0.33	! : 0.33	c : 0.33	
= : 0.33	! : 0.33	[ : 0.33	
d : 0.66	= : 0.33	
d : 0.66	= : 0.33	
d : 0.66	= : 0.33	
d : 0.66	= : 0.33	
# : 0.66	" : 0.33	
# : 0.66	" : 0.33	
# : 0.66	" : 0.33	
# : 0.66	f : 0.33	
f : 0.66	e : 0.33	
f : 0.66	e : 0.33	
f : 0.66	e : 0.33	
f : 0.66	e : 0.33	
f : 0.66	e : 0.33	
[ : 0.66	f : 0.33	
[ : 0.33	c : 0.33	b : 0.33	
f : 0.33	c : 0.33	b : 0.33	
f : 0.33	c : 0.33	b : 0.33	

#score	69.46277231406667
#seq	3
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_UTR_m3_run2.txt

#BEAR
#cccmmmmccc33	chr6:83877574-83877875(-)$1	301	70	83	8.7511
!cccmmmmccc22	chr1:241795778-241796010(-)$1	232	146	159	8.3314
bb[ammmmabb33	chr1:203768515-203768778(+)$1	263	222	235	7.0081
ddddmmmmdddd]	chr5:180683806-180684080(+)$1	274	160	173	6.9091
[cccmmmmccc]d	chr4:761836-762097(-)$1	261	196	209	8.0854
$cccmmmmccc44	chr6:64421398-64421666(+)$1	268	124	137	8.3331
bcccmmmmccc]b	chr6:64422831-64423193(+)$1	362	337	350	7.7133
eeeemmmmeeeee	chr1:46073460-46073739(+)$1	279	204	217	6.7694
eeeemmmmeeeee	chrX:135956798-135957053(-)$1	255	156	169	6.7694
eeeemmmmeeeee	chr3:42679728-42679994(+)$1	266	104	117	6.7694
:cccmmmmcccFF	chr9:126030698-126030948(-)$1	250	28	41	6.3138
ddddmmmmdddd2	chr6:136596694-136596941(-)$1	247	45	58	6.9022
iiiimmmmiiiii	chr3:160150795-160151038(+)$1	243	218	231	7.0520
fcccmmmmcccff	chr3:152057867-152058133(+)$1	266	134	147	7.6275
ddbbmmmmbb444	chr3:42679138-42679394(+)$1	256	122	135	6.6664
ggggmmmmggggg	chr16:24802489-24802749(+)$1	260	229	242	6.9661

#otherMatches

#Seq PSSM
GUGGUUCUCCAGU	chr6:83877574-83877875(-)$1	301	70	83	8.7511
UGGUGAAAACCUG	chr1:241795778-241796010(-)$1	232	146	159	8.3314
GGAGGCUACCCAG	chr1:203768515-203768778(+)$1	263	222	235	7.0081
GAUGGAAGCAUCU	chr5:180683806-180684080(+)$1	274	160	173	6.9091
AGCACCAUUGCAA	chr4:761836-762097(-)$1	261	196	209	8.0854
AUUCGUCAGAAAC	chr6:64421398-64421666(+)$1	268	124	137	8.3331
GCGCCAUAGUGAC	chr6:64422831-64423193(+)$1	362	337	350	7.7133
CAGAAGUCUCUGA	chr1:46073460-46073739(+)$1	279	204	217	6.7694
CACUGGAAAGUGG	chrX:135956798-135957053(-)$1	255	156	169	6.7694
UUAUGCUGGUAGU	chr3:42679728-42679994(+)$1	266	104	117	6.7694
GGCCAAUGGGCGC	chr9:126030698-126030948(-)$1	250	28	41	6.3138
UUUAUAUUUAAAC	chr6:136596694-136596941(-)$1	247	45	58	6.9022
GGAUUUUCAUUCC	chr3:160150795-160151038(+)$1	243	218	231	7.0520
ucaggagacugag	chr3:152057867-152058133(+)$1	266	134	147	7.6275
UCACCAAGGUCAA	chr3:42679138-42679394(+)$1	256	122	135	6.6664
CCCAGGGAUGGGG	chr16:24802489-24802749(+)$1	260	229	242	6.9661

#DB
.(((....)))..	chr6:83877574-83877875(-)$1	1	70	83	8.7511
.(((....)))..	chr1:241795778-241796010(-)$1	1	146	159	8.3314
((.(....)))..	chr1:203768515-203768778(+)$1	1	222	235	7.0081
((((....)))).	chr5:180683806-180684080(+)$1	1	160	173	6.9091
.(((....))).)	chr4:761836-762097(-)$1	1	196	209	8.0854
.(((....)))..	chr6:64421398-64421666(+)$1	1	124	137	8.3331
((((....))).)	chr6:64422831-64423193(+)$1	1	337	350	7.7133
((((....)))))	chr1:46073460-46073739(+)$1	1	204	217	6.7694
((((....)))))	chrX:135956798-135957053(-)$1	1	156	169	6.7694
((((....)))))	chr3:42679728-42679994(+)$1	1	104	117	6.7694
.(((....)))((	chr9:126030698-126030948(-)$1	1	28	41	6.3138
((((....)))).	chr6:136596694-136596941(-)$1	1	45	58	6.9022
((((....)))))	chr3:160150795-160151038(+)$1	1	218	231	7.0520
)(((....)))((	chr3:152057867-152058133(+)$1	1	134	147	7.6275
((((....))...	chr3:42679138-42679394(+)$1	1	122	135	6.6664
((((....)))))	chr16:24802489-24802749(+)$1	1	229	242	6.9661

#PSSM
d : 0.18	e : 0.18	b : 0.12	# : 0.06	! : 0.06	[ : 0.06	$ : 0.06	: : 0.06	i : 0.06	f : 0.06	g : 0.06	
c : 0.43	d : 0.18	e : 0.18	b : 0.06	i : 0.06	g : 0.06	
c : 0.43	e : 0.18	d : 0.12	[ : 0.06	i : 0.06	b : 0.06	g : 0.06	
c : 0.43	e : 0.18	d : 0.12	a : 0.06	i : 0.06	b : 0.06	g : 0.06	
m : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
c : 0.43	e : 0.18	d : 0.12	a : 0.06	i : 0.06	b : 0.06	g : 0.06	
c : 0.43	e : 0.18	b : 0.12	d : 0.12	i : 0.06	g : 0.06	
c : 0.43	e : 0.18	d : 0.12	b : 0.06	i : 0.06	4 : 0.06	g : 0.06	
e : 0.18	3 : 0.12	d : 0.12	] : 0.12	4 : 0.12	2 : 0.06	F : 0.06	i : 0.06	f : 0.06	g : 0.06	
e : 0.18	3 : 0.12	2 : 0.12	4 : 0.12	] : 0.06	d : 0.06	b : 0.06	F : 0.06	i : 0.06	f : 0.06	g : 0.06	

#score	116.9686513779875
#seq	16
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_CDS_m2_run1.txt

#BEAR
"""a!!dddd[eeeeennnnneeeee22dddd22a4444e	chr13:45911554-45911761(-)$1	207	95	135	47.5952
"""a!!dddd[eeeeennnnneeeee22dddd22a4444e	chr13:45911564-45911767(-)$1	203	101	141	47.5952
"""a!!dddd[eeeeennnnneeeee22dddd22a4444e	chr13:45911567-45911776(-)$1	209	110	150	47.5952
"""a!!dddd[eeeeennnnneeeee22dddd22a4444e	chr13:45911523-45911742(-)$1	219	76	116	47.5952
"""a!!dddd[eeeeennnnneeeee22dddd22a4444e	chr13:45911576-45911786(-)$1	210	120	160	47.5952
"""a!!dddd[eeeeennnnneeeee22dddd22a4444e	chr13:45911542-45911754(-)$1	212	88	128	47.5952
"""a!!dddd[eeeeennnnneeeee22dddd22a4444e	chr13:45911586-45911792(-)$1	206	126	166	47.5952
"""a!!dddd[eeeeennnnneeeee22dddd22a4444e	chr13:45911512-45911723(-)$1	211	57	97	47.5952

#otherMatches

#Seq PSSM
GCGCUUUCUGUCUGUCUUUGUGGCGGCCCAGAUUGAAUUG	chr13:45911554-45911761(-)$1	207	95	135	47.5952
GCGCUUUCUGUCUGUCUUUGUGGCGGCCCAGAUUGAAUUG	chr13:45911564-45911767(-)$1	203	101	141	47.5952
GCGCUUUCUGUCUGUCUUUGUGGCGGCCCAGAUUGAAUUG	chr13:45911567-45911776(-)$1	209	110	150	47.5952
GCGCUUUCUGUCUGUCUUUGUGGCGGCCCAGAUUGAAUUG	chr13:45911523-45911742(-)$1	219	76	116	47.5952
GCGCUUUCUGUCUGUCUUUGUGGCGGCCCAGAUUGAAUUG	chr13:45911576-45911786(-)$1	210	120	160	47.5952
GCGCUUUCUGUCUGUCUUUGUGGCGGCCCAGAUUGAAUUG	chr13:45911542-45911754(-)$1	212	88	128	47.5952
GCGCUUUCUGUCUGUCUUUGUGGCGGCCCAGAUUGAAUUG	chr13:45911586-45911792(-)$1	206	126	166	47.5952
GCGCUUUCUGUCUGUCUUUGUGGCGGCCCAGAUUGAAUUG	chr13:45911512-45911723(-)$1	211	57	97	47.5952

#DB
...(..((((.(((((.....)))))..))))..)....)	chr13:45911554-45911761(-)$1	1	95	135	47.5952
...(..((((.(((((.....)))))..))))..)....)	chr13:45911564-45911767(-)$1	1	101	141	47.5952
...(..((((.(((((.....)))))..))))..)....)	chr13:45911567-45911776(-)$1	1	110	150	47.5952
...(..((((.(((((.....)))))..))))..)....)	chr13:45911523-45911742(-)$1	1	76	116	47.5952
...(..((((.(((((.....)))))..))))..)....)	chr13:45911576-45911786(-)$1	1	120	160	47.5952
...(..((((.(((((.....)))))..))))..)....)	chr13:45911542-45911754(-)$1	1	88	128	47.5952
...(..((((.(((((.....)))))..))))..)....)	chr13:45911586-45911792(-)$1	1	126	166	47.5952
...(..((((.(((((.....)))))..))))..)....)	chr13:45911512-45911723(-)$1	1	57	97	47.5952

#PSSM
" : 1.00	
" : 1.00	
" : 1.00	
a : 1.00	
! : 1.00	
! : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
[ : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
2 : 1.00	
2 : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
2 : 1.00	
2 : 1.00	
a : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
e : 1.00	

#score	380.76212096960023
#seq	8
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_transcript_m1_run2.txt

#BEAR
===============[cccqqqqqqqqccc==========	chr8:33370931-33371148(+)$1	217	70	110	18.0811
===[==============ammmma]==============]	chr21:46554223-46554469(+)$1	246	78	118	25.2384
#dddd!!ccca[ccc[cccmmmmccc]ccc]a]ccc4444	chr18:47015540-47015754(-)$1	214	67	107	16.8074
====================lll=================	chr1:987863-988105(+)$1	242	175	215	24.7802
A{BB==========[ddddmmmmdddd]==========cc	chr19:6239484-6239830(-)$1	346	205	245	17.7603
=====iiiiiiiii[ddddmmmmddddiiiiiiiii]===	chr7:1479213-1479500(-)$1	287	131	171	21.5162
!!a[=========="""bbmmmmbb]==========a22c	chr20:37058208-37058444(-)$1	236	79	119	21.7674
d[============!!cccmmmmccc============]d	chr21:45304444-45304707(+)$1	263	97	137	24.0703
ggggg$$$$$iiiiiiiiimmmmiiiiiiiii333ggggg	chr7:140086472-140086717(-)$1	245	85	125	19.4638
ee[ccc"""==========nnnnn==========333ccc	chr17:27050350-27050591(+)$1	241	90	130	19.9687
============!!eeeeennnnneeeee===========	chr4:880677-881004(-)$1	327	33	73	19.7535
====[==============oooooo==============]	chr8:41284117-41284345(+)$1	228	9	49	23.9040
!==============[cccmmmmccc]=============	chr19:5052293-5052579(+)$1	286	6	46	25.5154
"""=============[bbnnnnnbb]=============	chr22:19887055-19887337(-)$1	282	49	89	21.8364
'''ccc[============mmmm============]ccc7	chr6:86387209-86387466(-)$1	257	194	234	19.9343
gggggg"""eeeee!!cccmmmmccceeeee]ggggggg]	chrX:48677279-48677553(+)$1	274	175	215	16.6879
==========iiiiiiiiillliiiiiiiiibb[iiiiii	chr19:572971-573226(+)$1	255	45	85	21.1025
:a[bb[==========[bbmmmmbb]==========]bb]	chr1:109642783-109642990(+)$1	207	60	100	19.9564
ggg"""bb####gggggggmmmmggggggg333bb4444g	chr6:167368711-167368989(-)$1	278	187	227	17.1328
=======!!==========mmmm==========22=====	chr15:89444189-89444553(-)$1	364	57	97	24.4870
eeee"""iiiiiiiii[ccclllccc]iiiiiiiii22ee	chr17:56409609-56409875(-)$1	266	80	120	18.7259
g!!============[bb[annnnna]bb===========	chr12:133112778-133113019(+)$1	241	64	104	20.3903
===[==============ammmma]==============]	chr21:46554281-46554513(+)$1	232	20	60	25.2384
ggg]============]=======================	chr7:1110234-1110511(-)$1	277	123	163	21.6745
======!!ccc"""eeeeemmmmeeeee4444ccc]====	chr7:98479338-98479543(+)$1	205	27	67	17.8506
=========[bb[ggggggglllggggggg]bb]======	chr11:64073161-64073437(+)$1	276	163	203	19.0609
[bb"""iiiiiiiii[bboooooobbiiiiiiiii4444b	chr7:45144347-45144609(-)$1	262	48	88	18.6724
!!ccc####eeeeecccooooooccc]eeeee333cccii	chr17:33900577-33900872(+)$1	295	40	80	14.8072
============="""dddd!!============lll===	chr12:133108185-133108451(+)$1	266	35	75	19.1640
============!!dddd[bb[a[ccc[============	chr1:109642831-109643035(+)$1	204	62	102	18.6539
ggggg[ccc[a[cccacccmmmmccc]a333ccc]a]ccc	chr12:7076408-7076644(-)$1	236	93	133	17.2673
[iiiiiiiii!!gggggggmmmmggggggg22iiiiiiii	chr1:1276105-1276392(-)$1	287	3	43	20.1025
[============!!ddddmmmmdddd]============	chr14:105625520-105625776(-)$1	256	167	207	22.9242
hhhh[==========[ddddllldddd22==========7	chr17:7480094-7480310(+)$1	216	82	122	18.8145
bb[iiiiiiiii[bb[cccmmmmccc]bb]iiiiiiiiib	chr10:101996718-101996991(-)$1	273	12	52	19.8113
===================mmmm==========55555==	chr7:2617258-2617529(+)$1	271	148	188	20.5652
=========[ffffffcccmmmmccc]ffffff22=====	chr1:1158377-1158645(-)$1	268	143	183	18.6370
FFiiiiiiiii[bbcccooooooccc]bb]iiiiiiiiig	chr16:89627003-89627219(+)$1	216	43	83	17.4306
==============!!a[ammmma]a333===========	chr1:19778474-19778750(-)$1	276	179	219	24.4578
iiccc"""ccc[a[ccc[ammmma]ccc]a]ccc333ccc	chr12:125398883-125399120(-)$1	237	44	84	17.5384
b===========####cccmmmmccc22===========]	chr16:88961034-88961271(-)$1	237	44	84	23.4010
h[a"""iiiiiiiii[cccmmmmccc22iiiiiiiii]ah	chr16:12354863-12355124(+)$1	261	153	193	20.8471
#dddd!!ccca[ccc[cccmmmmccc]ccc]a]ccc4444	chr18:47015515-47015730(-)$1	215	43	83	16.8074
==[================mmmm================]	chr8:650456-650688(-)$1	232	134	174	25.5839
%cccbb"""==========mmmm==========333bb]c	chrX:20154341-20154623(-)$1	282	91	131	20.5587

#otherMatches

#Seq PSSM
uaguucaugagcgugaugauuggguguucauacgcuugug	chr8:33370931-33371148(+)$1	217	70	110	18.0811
CCGAUGGGUGUGUGUGCCCGACAGUGGUGUGUGCGCCCGA	chr21:46554223-46554469(+)$1	246	78	118	25.2384
GAUUUGUGGUUGCUGUGAUGACUAUCUUAGGACACCUUUG	chr18:47015540-47015754(-)$1	214	67	107	16.8074
gcauggguccauguguguauaguguguacacaugggucca	chr1:987863-988105(+)$1	242	175	215	24.7802
gugugcaugugcaugugugaguacacaggugugcaugugg	chr19:6239484-6239830(-)$1	346	205	245	17.7603
uguguucauguaugugaugccuguauccaugcgugaugca	chr7:1479213-1479500(-)$1	287	131	171	21.5162
CCGUGUUUGGAGGGUCCACUCCUGUCUCUUCCAAACCCUG	chr20:37058208-37058444(-)$1	236	79	119	21.7674
uggccuggugcuggaugcuggguggccuggugcugggugg	chr21:45304444-45304707(+)$1	263	97	137	24.0703
cugguuagugcuugggugggacacugccugggaauaccgg	chr7:140086472-140086717(-)$1	245	85	125	19.4638
UCCUCUGGGCUAAUGAUGGAAAAAUCAUUAUUGGAAAAGA	chr17:27050350-27050591(+)$1	241	90	130	19.9687
guguacgcgugugugcgcgugagccgcgugcauguguacg	chr4:880677-881004(-)$1	327	33	73	19.7535
uauauacacacauacacauauauacguguguguguguguu	chr8:41284117-41284345(+)$1	228	9	49	23.9040
ugugcgugcaugugugugugugcaugggcgcaugugugCA	chr19:5052293-5052579(+)$1	286	6	46	25.5154
agaguaugugcaugcagguguguggcaugugugcacauac	chr22:19887055-19887337(-)$1	282	49	89	21.8364
UUGCCGUGAUUUUAUAACAGUUGUGUUAUAAAAUCCUGGG	chr6:86387209-86387466(-)$1	257	194	234	19.9343
UGUGCAUCUUUGGAUCUGCAUGUGCAUCUGACUGUGCAUG	chrX:48677279-48677553(+)$1	274	175	215	16.6879
CUUGGUCAGGGGAGGUGGGCGUCUUGCUUUUCGGUCACCU	chr19:572971-573226(+)$1	255	45	85	21.1025
UGGGUGUUGUGUGCGGAGCUGUGGCGUCGCGUGUGAGGCG	chr1:109642783-109642990(+)$1	207	60	100	19.9564
gugugucgugugugcgcgucugugcgugugugucgugugu	chr6:167368711-167368989(-)$1	278	187	227	17.1328
ugcgugugaaugcgugcgugugaaugugugugugaaugug	chr15:89444189-89444553(-)$1	364	57	97	24.4870
GGCUCCUCAGCUCGGGGCCUCUAGGGGCUUGGGCUGCUGG	chr17:56409609-56409875(-)$1	266	80	120	18.7259
UGCCAUGUGUACAUGAUGGUGUGUGAGUGCAUGUGUACAU	chr12:133112778-133113019(+)$1	241	64	104	20.3903
CCGAUGGGUGUGUGUGCCCGACAGUGGUGUGUGCGCCCGA	chr21:46554281-46554513(+)$1	232	20	60	25.2384
gcguugugugcauaugugcgugcaugugugcgcgugugcg	chr7:1110234-1110511(-)$1	277	123	163	21.6745
guguguguuuguguguguguguauaugCUUGUCAGUGCAU	chr7:98479338-98479543(+)$1	205	27	67	17.8506
CCAGUCCGGGCCACGGUUGGGACCCAGUCGAGGGUCGGAC	chr11:64073161-64073437(+)$1	276	163	203	19.0609
CAUGGGCCCUGGGUCACCUACCCUGGGACCUGGGGAUAAG	chr7:45144347-45144609(-)$1	262	48	88	18.6724
GAUGUGAAACUAGGGCACUGGGUUGCUCUUAGGUAAUACA	chr17:33900577-33900872(+)$1	295	40	80	14.8072
uggcguugcguguugugcacuuggcguuguguguugugca	chr12:133108185-133108451(+)$1	266	35	75	19.1640
GAGUGUGAGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUU	chr1:109642831-109643035(+)$1	204	62	102	18.6539
GUCCACGGUAGGGCUGGGCACAAGCCACCUGAGCGCAACC	chr12:7076408-7076644(-)$1	236	93	133	17.2673
gugugcaggugaguaugcaggugugcaugugugccugugc	chr1:1276105-1276392(-)$1	287	3	43	20.1025
GCCGUCCCCGGGUGUUCUGCAGGCAGGGGCUCGGGGGCGG	chr14:105625520-105625776(-)$1	256	167	207	22.9242
CCAGUGCAGCCCUGGCAGUGUCCUACUUCCCAGGGCUGUU	chr17:7480094-7480310(+)$1	216	82	122	18.8145
GGCAAAGGCUUGUGACGGAGAUAUCUCUCUUAAGCCUUUC	chr10:101996718-101996991(-)$1	273	12	52	19.8113
cugugugcggcguauacgcauuggcgugugcguggcugug	chr7:2617258-2617529(+)$1	271	148	188	20.5652
guacgugugugcgugccguguguacgagugugcugugcgc	chr1:1158377-1158645(-)$1	268	143	183	18.6370
GCCGGCCCUGCUAUCAUCCCAGAGUGCAUUGCGGGGCCGC	chr16:89627003-89627219(+)$1	216	43	83	17.4306
CUUGCCCUGACCCAGAUGUGCAGAGAGGAUGGGUUGGGGC	chr1:19778474-19778750(-)$1	276	179	219	24.4578
GGGACGGAGGCGUGUGGAGAGACCGCCAAGGGCUGUAGUC	chr12:125398883-125399120(-)$1	237	44	84	17.5384
CAGGUCUCAGCCACAGGUGCGAACACACGGCUGGGGCCUC	chr16:88961034-88961271(-)$1	237	44	84	23.4010
GUCCCCGGCUGGAGUGAGUGUUUGCUGAGCUCCGGUCUGU	chr16:12354863-12355124(+)$1	261	153	193	20.8471
GAUUUGUGGUUGCUGUGAUGACUAUCUUAGGACACCUUUG	chr18:47015515-47015730(-)$1	215	43	83	16.8074
cgcgugugcgggccugugcgccugugcgggccugugcgcc	chr8:650456-650688(-)$1	232	134	174	25.5839
AUUCUCUGAGAUCUGCUUUUACUGAAGUGGAUCAAUGAUG	chrX:20154341-20154623(-)$1	282	91	131	20.5587

#DB
)))))((((((((((.(((........)))))))))))))	chr8:33370931-33371148(+)$1	1	70	110	18.0811
(((.(((((((((((((((....).)))))))))))))).	chr21:46554223-46554469(+)$1	1	78	118	25.2384
.((((..((((.(((.(((....))).))).).)))....	chr18:47015540-47015754(-)$1	1	67	107	16.8074
((((((((((((((((((((...)))))))))))))))))	chr1:987863-988105(+)$1	1	175	215	24.7802
(.((((((((((((.((((....)))).))))))))))((	chr19:6239484-6239830(-)$1	1	205	245	17.7603
((((((((((((((.((((....))))))))))))).)))	chr7:1479213-1479500(-)$1	1	131	171	21.5162
..(.((((((((((...((....)).)))))))))))..)	chr20:37058208-37058444(-)$1	1	79	119	21.7674
(.((((((((((((..(((....))))))))))))))).)	chr21:45304444-45304707(+)$1	1	97	137	24.0703
(((((.....(((((((((....)))))))))...)))))	chr7:140086472-140086717(-)$1	1	85	125	19.4638
((.(((...((((((((((.....))))))))))...)))	chr17:27050350-27050591(+)$1	1	90	130	19.9687
((((((((((((..(((((.....))))))))))))))))	chr4:880677-881004(-)$1	1	33	73	19.7535
((((.((((((((((((((......)))))))))))))).	chr8:41284117-41284345(+)$1	1	9	49	23.9040
.((((((((((((((.(((....))).)))))))))))))	chr19:5052293-5052579(+)$1	1	6	46	25.5154
...(((((((((((((.((.....)).)))))))))))))	chr22:19887055-19887337(-)$1	1	49	89	21.8364
...(((.((((((((((((....)))))))))))).))).	chr6:86387209-86387466(-)$1	1	194	234	19.9343
((((((...(((((..(((....)))))))).))))))).	chrX:48677279-48677553(+)$1	1	175	215	16.6879
))))))))))(((((((((...)))))))))((.((((((	chr19:572971-573226(+)$1	1	45	85	21.1025
.(.((.((((((((((.((....)).)))))))))).)).	chr1:109642783-109642990(+)$1	1	60	100	19.9564
(((...((....(((((((....)))))))...))....)	chr6:167368711-167368989(-)$1	1	187	227	17.1328
(((((((..((((((((((....))))))))))..)))))	chr15:89444189-89444553(-)$1	1	57	97	24.4870
((((...(((((((((.(((...))).)))))))))..))	chr17:56409609-56409875(-)$1	1	80	120	18.7259
(..((((((((((((.((.(.....).)))))))))))))	chr12:133112778-133113019(+)$1	1	64	104	20.3903
(((.(((((((((((((((....).)))))))))))))).	chr21:46554281-46554513(+)$1	1	20	60	25.2384
))).)))))))))))).)))))))))))))))))))))))	chr7:1110234-1110511(-)$1	1	123	163	21.6745
((((((..(((...(((((....)))))....))).))))	chr7:98479338-98479543(+)$1	1	27	67	17.8506
(((((((((.((.(((((((...))))))).)).))))))	chr11:64073161-64073437(+)$1	1	163	203	19.0609
.((...(((((((((.((......)))))))))))....)	chr7:45144347-45144609(-)$1	1	48	88	18.6724
..(((....((((((((......))).)))))...)))))	chr17:33900577-33900872(+)$1	1	40	80	14.8072
(((((((((((((...((((..((((((((((((...)))	chr12:133108185-133108451(+)$1	1	35	75	19.1640
((((((((((((..((((.((.(.(((.((((((((((((	chr1:109642831-109643035(+)$1	1	62	102	18.6539
(((((.(((.(.(((((((....))).)...))).).)))	chr12:7076408-7076644(-)$1	1	93	133	17.2673
.(((((((((..(((((((....)))))))..))))))))	chr1:1276105-1276392(-)$1	1	3	43	20.1025
.((((((((((((..((((....)))).))))))))))))	chr14:105625520-105625776(-)$1	1	167	207	22.9242
((((.((((((((((.((((...))))..)))))))))).	chr17:7480094-7480310(+)$1	1	82	122	18.8145
((.(((((((((.((.(((....))).)).))))))))))	chr10:101996718-101996991(-)$1	1	12	52	19.8113
(((((((((((((((((((....)))))))))).....))	chr7:2617258-2617529(+)$1	1	148	188	20.5652
(((((((((.(((((((((....))).))))))..)))))	chr1:1158377-1158645(-)$1	1	143	183	18.6370
(((((((((((.(((((......))).)).)))))))))(	chr16:89627003-89627219(+)$1	1	43	83	17.4306
((((((((((((((..(.(....).)...)))))))))))	chr1:19778474-19778750(-)$1	1	179	219	24.4578
))(((...(((.(.(((.(....).))).).)))...)))	chr12:125398883-125399120(-)$1	1	44	84	17.5384
((((((((((((....(((....)))..))))))))))).	chr16:88961034-88961271(-)$1	1	44	84	23.4010
(.(...(((((((((.(((....)))..))))))))).))	chr16:12354863-12355124(+)$1	1	153	193	20.8471
.((((..((((.(((.(((....))).))).).)))....	chr18:47015515-47015730(-)$1	1	43	83	16.8074
((.((((((((((((((((....)))))))))))))))).	chr8:650456-650688(-)$1	1	134	174	25.5839
.(((((...((((((((((....))))))))))...)).)	chrX:20154341-20154623(-)$1	1	91	131	20.5587

#PSSM
= : 0.37	g : 0.13	! : 0.06	[ : 0.06	# : 0.04	e : 0.04	h : 0.04	b : 0.04	A : 0.02	d : 0.02	" : 0.02	' : 0.02	: : 0.02	F : 0.02	i : 0.02	% : 0.02	
= : 0.44	g : 0.11	! : 0.06	d : 0.04	[ : 0.04	e : 0.04	b : 0.04	i : 0.04	{ : 0.02	" : 0.02	' : 0.02	a : 0.02	h : 0.02	F : 0.02	c : 0.02	
= : 0.44	g : 0.11	[ : 0.08	c : 0.06	d : 0.04	a : 0.04	i : 0.04	B : 0.02	" : 0.02	' : 0.02	e : 0.02	! : 0.02	b : 0.02	h : 0.02	
= : 0.46	c : 0.11	[ : 0.06	g : 0.06	" : 0.06	i : 0.06	d : 0.04	B : 0.02	b : 0.02	e : 0.02	] : 0.02	h : 0.02	
= : 0.55	c : 0.08	" : 0.08	g : 0.06	i : 0.06	d : 0.04	[ : 0.04	b : 0.04	
= : 0.57	" : 0.11	i : 0.08	! : 0.04	c : 0.04	[ : 0.04	$ : 0.02	g : 0.02	# : 0.02	b : 0.02	
= : 0.57	i : 0.13	" : 0.11	! : 0.06	$ : 0.02	[ : 0.02	b : 0.02	# : 0.02	c : 0.02	
= : 0.57	i : 0.15	" : 0.08	c : 0.06	! : 0.04	$ : 0.02	b : 0.02	# : 0.02	
= : 0.57	i : 0.15	c : 0.11	" : 0.06	# : 0.04	$ : 0.02	! : 0.02	
= : 0.59	i : 0.15	c : 0.08	[ : 0.06	e : 0.04	$ : 0.02	# : 0.02	
= : 0.57	i : 0.17	a : 0.06	e : 0.04	c : 0.04	# : 0.02	b : 0.02	! : 0.02	f : 0.02	
= : 0.57	i : 0.15	[ : 0.11	e : 0.04	# : 0.02	" : 0.02	b : 0.02	! : 0.02	f : 0.02	
= : 0.51	i : 0.13	c : 0.06	! : 0.04	e : 0.04	g : 0.04	[ : 0.04	" : 0.02	f : 0.02	b : 0.02	a : 0.02	# : 0.02	
= : 0.46	i : 0.13	c : 0.06	! : 0.06	g : 0.06	e : 0.04	" : 0.04	b : 0.04	f : 0.02	[ : 0.02	# : 0.02	
= : 0.37	c : 0.13	i : 0.11	! : 0.08	g : 0.06	[ : 0.04	" : 0.04	e : 0.04	d : 0.02	b : 0.02	f : 0.02	# : 0.02	
= : 0.28	[ : 0.20	d : 0.08	! : 0.06	i : 0.06	g : 0.06	c : 0.06	" : 0.04	e : 0.04	a : 0.02	f : 0.02	# : 0.02	
c : 0.31	= : 0.22	d : 0.13	[ : 0.06	g : 0.06	i : 0.04	e : 0.04	b : 0.04	" : 0.02	] : 0.02	a : 0.02	
c : 0.26	= : 0.24	d : 0.13	b : 0.11	g : 0.06	i : 0.04	e : 0.04	o : 0.04	[ : 0.04	
c : 0.26	= : 0.20	d : 0.11	a : 0.08	b : 0.06	g : 0.06	o : 0.06	i : 0.04	e : 0.04	[ : 0.04	
m : 0.62	o : 0.08	n : 0.06	= : 0.04	d : 0.04	q : 0.02	l : 0.02	c : 0.02	a : 0.02	g : 0.02	b : 0.02	
m : 0.62	l : 0.11	n : 0.08	o : 0.08	q : 0.02	= : 0.02	! : 0.02	b : 0.02	
m : 0.62	l : 0.11	n : 0.08	o : 0.08	q : 0.02	= : 0.02	! : 0.02	[ : 0.02	
m : 0.62	l : 0.08	n : 0.08	o : 0.08	= : 0.04	q : 0.02	i : 0.02	a : 0.02	
c : 0.28	= : 0.17	a : 0.08	d : 0.08	n : 0.08	g : 0.06	b : 0.04	i : 0.04	o : 0.04	q : 0.02	e : 0.02	[ : 0.02	
c : 0.31	= : 0.20	] : 0.08	d : 0.08	b : 0.08	g : 0.06	i : 0.04	e : 0.04	q : 0.02	o : 0.02	n : 0.02	
c : 0.33	= : 0.26	d : 0.08	g : 0.06	] : 0.04	i : 0.04	e : 0.04	b : 0.04	a : 0.04	q : 0.02	
= : 0.33	] : 0.24	d : 0.08	i : 0.06	e : 0.06	g : 0.06	c : 0.04	2 : 0.04	q : 0.02	3 : 0.02	
= : 0.37	i : 0.11	c : 0.08	e : 0.08	g : 0.06	b : 0.06	2 : 0.06	] : 0.04	[ : 0.02	a : 0.02	f : 0.02	3 : 0.02	
= : 0.46	i : 0.13	c : 0.06	e : 0.06	g : 0.06	b : 0.06	3 : 0.04	4 : 0.02	2 : 0.02	f : 0.02	] : 0.02	
= : 0.55	i : 0.13	c : 0.06	g : 0.06	e : 0.04	] : 0.04	4 : 0.02	3 : 0.02	f : 0.02	a : 0.02	
= : 0.57	i : 0.17	] : 0.08	e : 0.04	3 : 0.04	4 : 0.02	2 : 0.02	f : 0.02	
= : 0.57	i : 0.15	a : 0.04	b : 0.04	c : 0.04	] : 0.02	3 : 0.02	4 : 0.02	e : 0.02	2 : 0.02	f : 0.02	
= : 0.57	i : 0.15	3 : 0.06	c : 0.06	] : 0.04	b : 0.04	g : 0.02	f : 0.02	
= : 0.51	i : 0.15	c : 0.11	3 : 0.06	2 : 0.04	g : 0.02	[ : 0.02	b : 0.02	] : 0.02	5 : 0.02	
= : 0.48	i : 0.17	3 : 0.11	c : 0.06	2 : 0.04	g : 0.02	b : 0.02	l : 0.02	] : 0.02	5 : 0.02	
= : 0.51	i : 0.15	c : 0.06	3 : 0.06	g : 0.04	] : 0.04	4 : 0.04	l : 0.02	a : 0.02	5 : 0.02	
= : 0.48	i : 0.11	4 : 0.08	] : 0.06	g : 0.04	3 : 0.04	c : 0.04	a : 0.02	2 : 0.02	l : 0.02	5 : 0.02	b : 0.02	
= : 0.53	c : 0.11	4 : 0.08	i : 0.08	2 : 0.04	g : 0.04	b : 0.04	5 : 0.02	] : 0.02	
= : 0.51	c : 0.11	i : 0.11	4 : 0.08	] : 0.04	g : 0.04	2 : 0.02	b : 0.02	e : 0.02	a : 0.02	
= : 0.37	] : 0.15	c : 0.13	g : 0.06	i : 0.06	4 : 0.04	7 : 0.04	b : 0.04	d : 0.02	e : 0.02	h : 0.02	

#score	918.7512119865773
#seq	45
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_UTR_m1_run2.txt

#BEAR
[bba[bb!!ccc!!bbpppppppbb4444ccc	chr11:618785-618994(-)$1	209	48	80	20.1176
ddda[bb[hhhhhhhhppppppphhhhhhhhb	chr11:75115118-75115352(+)$1	234	111	143	16.0076
!!a[ffffff[eeeeepppppppeeeee]fff	chr10:81074843-81075127(+)$1	284	43	75	17.7614
!!ccc$$$$$ffffffrrrrrrrrrffffff3	chr11:9481795-9482048(-)$1	253	83	115	13.2143
""eeeee!!gggggggssssssssssgggggg	chr9:19380096-19380331(-)$1	235	75	107	11.6954
ggga[bb!!ccc!!bbpppppppbb4444ccc	chr11:618794-619008(-)$1	214	155	187	20.1689
dddd!!dddd[eeeeepppppppeeeee22dd	chr4:39459954-39460161(-)$1	207	4	36	17.0650
ffffffggggggg[bbpppppppbbggggggg	chr3:23959240-23959465(+)$1	225	22	54	17.0944
dddd[bb####eeeeepppppppeeeee333b	chr16:18801528-18801755(-)$1	227	128	160	19.6924

#otherMatches

#Seq PSSM
ACACAGCACAGACCCCAAAGCCAGGAACCUCU	chr11:618785-618994(-)$1	209	48	80	20.1176
CGCCACGUGUUGCUCAGACAGGGUGAGCAGCU	chr11:75115118-75115352(+)$1	234	111	143	16.0076
AGGCGGGUUUCCUGGGUCCCCUCUCCAGCAAG	chr10:81074843-81075127(+)$1	284	43	75	17.7614
CUUGCUCUAGGGCUCUGCAUUCCCGAGAGCUG	chr11:9481795-9482048(-)$1	253	83	115	13.2143
CUGCGCUAAGCGGAAGUUGGCCCUCUUUUCCG	chr9:19380096-19380331(-)$1	235	75	107	11.6954
GCACAGCACAGACCCCAGAGCCAGGAACCUCU	chr11:618794-619008(-)$1	214	155	187	20.1689
CGCCUGGCAGUCUCCAGUAGGAGUGGAGCUCU	chr4:39459954-39460161(-)$1	207	4	36	17.0650
GGGAACUAAGAUGGACGGAUACAGUCGUCUUA	chr3:23959240-23959465(+)$1	225	22	54	17.0944
GUAGCACUCUCUGAGAGCUCCAAUUUCAUCCG	chr16:18801528-18801755(-)$1	227	128	160	19.6924

#DB
.(((.((..(((..((.......))....)))	chr11:618785-618994(-)$1	1	48	80	20.1176
((((.((.((((((((.......)))))))))	chr11:75115118-75115352(+)$1	1	111	143	16.0076
..(.((((((.(((((.......))))).)))	chr10:81074843-81075127(+)$1	1	43	75	17.7614
..(((.....((((((.........)))))).	chr11:9481795-9482048(-)$1	1	83	115	13.2143
..(((((..(((((((..........))))))	chr9:19380096-19380331(-)$1	1	75	107	11.6954
((((.((..(((..((.......))....)))	chr11:618794-619008(-)$1	1	155	187	20.1689
((((..((((.(((((.......)))))..))	chr4:39459954-39460161(-)$1	1	4	36	17.0650
))))))(((((((.((.......)))))))))	chr3:23959240-23959465(+)$1	1	22	54	17.0944
((((.((....(((((.......)))))...)	chr16:18801528-18801755(-)$1	1	128	160	19.6924

#PSSM
d : 0.33	! : 0.22	[ : 0.11	" : 0.11	g : 0.11	f : 0.11	
d : 0.33	! : 0.22	b : 0.11	" : 0.11	g : 0.11	f : 0.11	
d : 0.33	b : 0.11	a : 0.11	c : 0.11	e : 0.11	g : 0.11	f : 0.11	
a : 0.33	d : 0.22	[ : 0.11	c : 0.11	e : 0.11	f : 0.11	
[ : 0.44	f : 0.22	c : 0.11	e : 0.11	! : 0.11	
b : 0.44	f : 0.22	$ : 0.11	e : 0.11	! : 0.11	
b : 0.44	f : 0.11	$ : 0.11	e : 0.11	d : 0.11	g : 0.11	
! : 0.33	[ : 0.11	f : 0.11	$ : 0.11	d : 0.11	g : 0.11	# : 0.11	
! : 0.33	h : 0.11	f : 0.11	$ : 0.11	d : 0.11	g : 0.11	# : 0.11	
c : 0.22	g : 0.22	h : 0.11	f : 0.11	$ : 0.11	d : 0.11	# : 0.11	
c : 0.22	[ : 0.22	g : 0.22	h : 0.11	f : 0.11	# : 0.11	
e : 0.33	c : 0.22	g : 0.22	h : 0.11	f : 0.11	
e : 0.33	! : 0.22	g : 0.22	h : 0.11	f : 0.11	
e : 0.33	! : 0.22	h : 0.11	f : 0.11	g : 0.11	[ : 0.11	
b : 0.33	e : 0.33	h : 0.11	f : 0.11	g : 0.11	
b : 0.33	e : 0.33	h : 0.11	f : 0.11	g : 0.11	
p : 0.77	r : 0.11	s : 0.11	
p : 0.77	r : 0.11	s : 0.11	
p : 0.77	r : 0.11	s : 0.11	
p : 0.77	r : 0.11	s : 0.11	
p : 0.77	r : 0.11	s : 0.11	
p : 0.77	r : 0.11	s : 0.11	
p : 0.77	r : 0.11	s : 0.11	
b : 0.33	e : 0.33	h : 0.11	r : 0.11	s : 0.11	
b : 0.33	e : 0.33	h : 0.11	r : 0.11	s : 0.11	
e : 0.33	4 : 0.22	h : 0.11	f : 0.11	s : 0.11	g : 0.11	
e : 0.33	4 : 0.22	g : 0.22	h : 0.11	f : 0.11	
e : 0.33	4 : 0.22	g : 0.22	h : 0.11	f : 0.11	
4 : 0.22	g : 0.22	h : 0.11	] : 0.11	f : 0.11	2 : 0.11	3 : 0.11	
c : 0.22	f : 0.22	g : 0.22	h : 0.11	2 : 0.11	3 : 0.11	
c : 0.22	f : 0.22	g : 0.22	h : 0.11	d : 0.11	3 : 0.11	
c : 0.22	b : 0.22	g : 0.22	f : 0.11	3 : 0.11	d : 0.11	

#score	152.8176139022778
#seq	9
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_UTR_m3_run2.txt

#BEAR
fffffnnnnnfffff	chr11:62609096-62609311(-)$1	215	98	113	9.8593
[ddddnnnnndddd]	chr17:8076734-8076940(-)$1	206	109	124	11.3944
e[cccnnnnnccc33	chr15:25227104-25227355(+)$1	251	152	167	10.6078
eeeeennnnneeeee	chr15:44057563-44057815(+)$1	252	137	152	9.8645
[ddddnnnnndddd]	chr17:8076690-8076892(-)$1	202	61	76	11.3944
d[cccnnnnnccc]d	chr11:122929954-122930162(-)$1	208	137	152	10.3670
[ddddnnnnndddd]	chr3:133473238-133473448(+)$1	210	180	195	11.3944
fffffnnnnnfffff	chr11:62609048-62609265(-)$1	217	52	67	9.8593
fffffnnnnnfffff	chr17:7481277-7481492(+)$1	215	7	22	9.8593
d[cccnnnnnccc]d	chr11:122929963-122930166(-)$1	203	141	156	10.3670
fffffnnnnnfffff	chr11:62609033-62609240(-)$1	207	27	42	9.8593
iiiiinnnnniiiii	chr11:122929941-122930149(-)$1	208	187	202	10.4801
[ddddnnnnndddd]	chr17:8076724-8076929(-)$1	205	98	113	11.3944
[ddddnnnnndddd]	chr17:8076668-8076890(-)$1	222	59	74	11.3944
fffffnnnnnfffff	chr11:62608993-62609220(-)$1	227	7	22	9.8593
iiiiinnnnniiiii	chr11:75111343-75111571(+)$1	228	158	173	10.4801
[ddddnnnnndddd]	chr17:8076714-8076916(-)$1	202	85	100	11.3944
h[cccnnnnnccc]h	chr18:47017954-47018165(-)$1	211	155	170	10.4062
[ddddnnnnndddd]	chr17:8076761-8076969(-)$1	208	138	153	11.3944
eddddnnnnnddddE	chr4:74279232-74279447(+)$1	215	99	114	9.7017
[ddddnnnnndddd]	chr17:8076721-8076924(-)$1	203	93	108	11.3944
eeeeennnnneeeee	chr4:74277701-74277914(+)$1	213	196	211	9.8645
h[cccnnnnnccc]h	chr18:47017941-47018154(-)$1	213	144	159	10.4062
[ddddnnnnndddd]	chr17:8076698-8076905(-)$1	207	74	89	11.3944
gggggnnnnnggggg	chr11:93464054-93464258(-)$1	204	163	178	10.5390
iiiiinnnnniiiii	chr11:75111371-75111588(+)$1	217	130	145	10.4801
[ddddnnnnndddd]	chr17:8076769-8076972(-)$1	203	141	156	11.3944
fffffnnnnnfffff	chr11:62609020-62609227(-)$1	207	14	29	9.8593
eddddnnnnnddddE	chr4:74279148-74279389(+)$1	241	183	198	9.7017
:ddddnnnnndddda	chr11:93466536-93466742(-)$1	206	117	132	9.5976
fffffnnnnnfffff	chr3:133467237-133467499(+)$1	262	222	237	9.8593
[ddddnnnnndddd]	chr17:8076746-8076961(-)$1	215	130	145	11.3944
[ddddnnnnndddd]	chr3:133473253-133473498(+)$1	245	165	180	11.3944
d[cccnnnnnccc]d	chr11:122929967-122930183(-)$1	216	158	173	10.3670
gggggnnnnnggggg	chr4:74283198-74283424(+)$1	226	181	196	10.5390
gggggnnnnnggggg	chr12:9245960-9246179(-)$1	219	29	44	10.5390
dddddnnnnndddd]	chr15:25227082-25227299(+)$1	217	137	152	11.0144
fffffnnnnnfffff	chr15:83424621-83424923(+)$1	302	224	239	9.8593
"ddddnnnnndddde	chr4:74279074-74279282(+)$1	208	60	75	10.7521
[ddddnnnnndddd]	chr17:8076729-8076934(-)$1	205	103	118	11.3944
eddddnnnnndddd3	chr11:122929542-122929749(-)$1	207	79	94	10.9228
fffffnnnnnfffff	chr17:7481273-7481476(+)$1	203	11	26	9.8593
eddddnnnnndddd3	chr11:122929549-122929756(-)$1	207	86	101	10.9228
dddddnnnnndddd]	chr15:25227038-25227282(+)$1	244	181	196	11.0144
gggggnnnnnggggg	chr11:93464043-93464252(-)$1	209	157	172	10.5390
fffffnnnnnfffff	chr11:62609111-62609355(-)$1	244	142	157	9.8593
d[cccnnnnnccc]d	chr11:122929987-122930195(-)$1	208	170	185	10.3670
eeeeennnnneeeee	chr19:49993185-49993404(+)$1	219	31	46	9.8645
iiiiinnnnniiiii	chr11:75111418-75111625(+)$1	207	83	98	10.4801
d[cccnnnnnccc]d	chr11:122929983-122930187(-)$1	204	162	177	10.3670
iiiiinnnnniiiii	chr11:75111425-75111677(+)$1	252	76	91	10.4801
gggggnnnnnggggg	chr4:74283154-74283398(+)$1	244	225	240	10.5390
gggggnnnnnggggg	chr12:9243905-9244124(-)$1	219	29	44	10.5390
fffffnnnnnfffff	chr19:5140264-5140509(+)$1	245	67	82	9.8593
d[cccnnnnnccc]d	chr11:122929949-122930154(-)$1	205	129	144	10.3670
gggggnnnnnggggg	chr11:93464070-93464283(-)$1	213	188	203	10.5390
iiiiinnnnniiiii	chr11:75111395-75111603(+)$1	208	106	121	10.4801
iiiiinnnnniiiii	chr11:75111404-75111618(+)$1	214	97	112	10.4801
[ddddnnnnndddd]	chr17:8076740-8076946(-)$1	206	115	130	11.3944
eeeeennnnneeeee	chr6:31508793-31509034(-)$1	241	12	27	9.8645

#otherMatches

#Seq PSSM
uccucuauccgagga	chr11:62609096-62609311(-)$1	215	98	113	9.8593
aacgugauuaacguc	chr17:8076734-8076940(-)$1	206	109	124	11.3944
CUGCAGAAAAUGUUU	chr15:25227104-25227355(+)$1	251	152	167	10.6078
CUGUGGCAUAUACAG	chr15:44057563-44057815(+)$1	252	137	152	9.8645
aacgugauuaacguc	chr17:8076690-8076892(-)$1	202	61	76	11.3944
AGCUAUGUACUGGGU	chr11:122929954-122930162(-)$1	208	137	152	10.3670
UCCUGCCACACGGGU	chr3:133473238-133473448(+)$1	210	180	195	11.3944
uccucuauccgagga	chr11:62609048-62609265(-)$1	217	52	67	9.8593
UCCCUCUCCAAGGGG	chr17:7481277-7481492(+)$1	215	7	22	9.8593
AGCUAUGUACUGGGU	chr11:122929963-122930166(-)$1	203	141	156	10.3670
uccucuauccgagga	chr11:62609033-62609240(-)$1	207	27	42	9.8593
GGCAGCCAUCUUGUC	chr11:122929941-122930149(-)$1	208	187	202	10.4801
aacgugauuaacguc	chr17:8076724-8076929(-)$1	205	98	113	11.3944
aacgugauuaacguc	chr17:8076668-8076890(-)$1	222	59	74	11.3944
uccucuauccgagga	chr11:62608993-62609220(-)$1	227	7	22	9.8593
GCUGCGUUCUGUGGC	chr11:75111343-75111571(+)$1	228	158	173	10.4801
aacgugauuaacguc	chr17:8076714-8076916(-)$1	202	85	100	11.3944
ACUGAAUGAGUUACU	chr18:47017954-47018165(-)$1	211	155	170	10.4062
aacgugauuaacguc	chr17:8076761-8076969(-)$1	208	138	153	11.3944
AAGGAUGUCUUCCUG	chr4:74279232-74279447(+)$1	215	99	114	9.7017
aacgugauuaacguc	chr17:8076721-8076924(-)$1	203	93	108	11.3944
GAUGCGUUUGGUAUC	chr4:74277701-74277914(+)$1	213	196	211	9.8645
ACUGAAUGAGUUACU	chr18:47017941-47018154(-)$1	213	144	159	10.4062
aacgugauuaacguc	chr17:8076698-8076905(-)$1	207	74	89	11.3944
AUUUUUCUUUAAAAU	chr11:93464054-93464258(-)$1	204	163	178	10.5390
GCUGCGUUCUGUGGC	chr11:75111371-75111588(+)$1	217	130	145	10.4801
aacgugauuaacguc	chr17:8076769-8076972(-)$1	203	141	156	11.3944
uccucuauccgagga	chr11:62609020-62609227(-)$1	207	14	29	9.8593
AAGGAUGUCUUCCUG	chr4:74279148-74279389(+)$1	241	183	198	9.7017
AGUUUGAAAAAGACG	chr11:93466536-93466742(-)$1	206	117	132	9.5976
GAAAGCCAUACUUUC	chr3:133467237-133467499(+)$1	262	222	237	9.8593
aacgugauuaacguc	chr17:8076746-8076961(-)$1	215	130	145	11.3944
UCCUGCCACACGGGU	chr3:133473253-133473498(+)$1	245	165	180	11.3944
AGCUAUGUACUGGGU	chr11:122929967-122930183(-)$1	216	158	173	10.3670
AGACUAUGUGAGUCu	chr4:74283198-74283424(+)$1	226	181	196	10.5390
UGCACGCCUGGUGCA	chr12:9245960-9246179(-)$1	219	29	44	10.5390
CAGUGUGCCUCACUA	chr15:25227082-25227299(+)$1	217	137	152	11.0144
CCUAUAGAAAAUAGG	chr15:83424621-83424923(+)$1	302	224	239	9.8593
AGGCGGACCUUGCCA	chr4:74279074-74279282(+)$1	208	60	75	10.7521
aacgugauuaacguc	chr17:8076729-8076934(-)$1	205	103	118	11.3944
guuuccaccagaaag	chr11:122929542-122929749(-)$1	207	79	94	10.9228
UCCCUCUCCAAGGGG	chr17:7481273-7481476(+)$1	203	11	26	9.8593
guuuccaccagaaag	chr11:122929549-122929756(-)$1	207	86	101	10.9228
CAGUGUGCCUCACUA	chr15:25227038-25227282(+)$1	244	181	196	11.0144
AUUUUUCUUUAAAAU	chr11:93464043-93464252(-)$1	209	157	172	10.5390
uccucuauccgagga	chr11:62609111-62609355(-)$1	244	142	157	9.8593
AGCUAUGUACUGGGU	chr11:122929987-122930195(-)$1	208	170	185	10.3670
CGCUGGAGGUCAGUG	chr19:49993185-49993404(+)$1	219	31	46	9.8645
GCUGCGUUCUGUGGC	chr11:75111418-75111625(+)$1	207	83	98	10.4801
AGCUAUGUACUGGGU	chr11:122929983-122930187(-)$1	204	162	177	10.3670
GCUGCGUUCUGUGGC	chr11:75111425-75111677(+)$1	252	76	91	10.4801
AGACUAUGUGAGUCu	chr4:74283154-74283398(+)$1	244	225	240	10.5390
AGGGAUUCUCUCCCU	chr12:9243905-9244124(-)$1	219	29	44	10.5390
CUGCACACCCUGUAG	chr19:5140264-5140509(+)$1	245	67	82	9.8593
AGCUAUGUACUGGGU	chr11:122929949-122930154(-)$1	205	129	144	10.3670
AUUUUUCUUUAAAAU	chr11:93464070-93464283(-)$1	213	188	203	10.5390
GCUGCGUUCUGUGGC	chr11:75111395-75111603(+)$1	208	106	121	10.4801
GCUGCGUUCUGUGGC	chr11:75111404-75111618(+)$1	214	97	112	10.4801
aacgugauuaacguc	chr17:8076740-8076946(-)$1	206	115	130	11.3944
UUGCUUAAACAGCGG	chr6:31508793-31509034(-)$1	241	12	27	9.8645

#DB
(((((.....)))))	chr11:62609096-62609311(-)$1	1	98	113	9.8593
.((((.....)))).	chr17:8076734-8076940(-)$1	1	109	124	11.3944
(.(((.....)))..	chr15:25227104-25227355(+)$1	1	152	167	10.6078
(((((.....)))))	chr15:44057563-44057815(+)$1	1	137	152	9.8645
.((((.....)))).	chr17:8076690-8076892(-)$1	1	61	76	11.3944
(.(((.....))).)	chr11:122929954-122930162(-)$1	1	137	152	10.3670
.((((.....)))).	chr3:133473238-133473448(+)$1	1	180	195	11.3944
(((((.....)))))	chr11:62609048-62609265(-)$1	1	52	67	9.8593
(((((.....)))))	chr17:7481277-7481492(+)$1	1	7	22	9.8593
(.(((.....))).)	chr11:122929963-122930166(-)$1	1	141	156	10.3670
(((((.....)))))	chr11:62609033-62609240(-)$1	1	27	42	9.8593
(((((.....)))))	chr11:122929941-122930149(-)$1	1	187	202	10.4801
.((((.....)))).	chr17:8076724-8076929(-)$1	1	98	113	11.3944
.((((.....)))).	chr17:8076668-8076890(-)$1	1	59	74	11.3944
(((((.....)))))	chr11:62608993-62609220(-)$1	1	7	22	9.8593
(((((.....)))))	chr11:75111343-75111571(+)$1	1	158	173	10.4801
.((((.....)))).	chr17:8076714-8076916(-)$1	1	85	100	11.3944
(.(((.....))).)	chr18:47017954-47018165(-)$1	1	155	170	10.4062
.((((.....)))).	chr17:8076761-8076969(-)$1	1	138	153	11.3944
)((((.....)))))	chr4:74279232-74279447(+)$1	1	99	114	9.7017
.((((.....)))).	chr17:8076721-8076924(-)$1	1	93	108	11.3944
(((((.....)))))	chr4:74277701-74277914(+)$1	1	196	211	9.8645
(.(((.....))).)	chr18:47017941-47018154(-)$1	1	144	159	10.4062
.((((.....)))).	chr17:8076698-8076905(-)$1	1	74	89	11.3944
(((((.....)))))	chr11:93464054-93464258(-)$1	1	163	178	10.5390
(((((.....)))))	chr11:75111371-75111588(+)$1	1	130	145	10.4801
.((((.....)))).	chr17:8076769-8076972(-)$1	1	141	156	11.3944
(((((.....)))))	chr11:62609020-62609227(-)$1	1	14	29	9.8593
)((((.....)))))	chr4:74279148-74279389(+)$1	1	183	198	9.7017
.((((.....))))(	chr11:93466536-93466742(-)$1	1	117	132	9.5976
(((((.....)))))	chr3:133467237-133467499(+)$1	1	222	237	9.8593
.((((.....)))).	chr17:8076746-8076961(-)$1	1	130	145	11.3944
.((((.....)))).	chr3:133473253-133473498(+)$1	1	165	180	11.3944
(.(((.....))).)	chr11:122929967-122930183(-)$1	1	158	173	10.3670
(((((.....)))))	chr4:74283198-74283424(+)$1	1	181	196	10.5390
(((((.....)))))	chr12:9245960-9246179(-)$1	1	29	44	10.5390
(((((.....)))).	chr15:25227082-25227299(+)$1	1	137	152	11.0144
(((((.....)))))	chr15:83424621-83424923(+)$1	1	224	239	9.8593
.((((.....)))))	chr4:74279074-74279282(+)$1	1	60	75	10.7521
.((((.....)))).	chr17:8076729-8076934(-)$1	1	103	118	11.3944
(((((.....)))).	chr11:122929542-122929749(-)$1	1	79	94	10.9228
(((((.....)))))	chr17:7481273-7481476(+)$1	1	11	26	9.8593
(((((.....)))).	chr11:122929549-122929756(-)$1	1	86	101	10.9228
(((((.....)))).	chr15:25227038-25227282(+)$1	1	181	196	11.0144
(((((.....)))))	chr11:93464043-93464252(-)$1	1	157	172	10.5390
(((((.....)))))	chr11:62609111-62609355(-)$1	1	142	157	9.8593
(.(((.....))).)	chr11:122929987-122930195(-)$1	1	170	185	10.3670
(((((.....)))))	chr19:49993185-49993404(+)$1	1	31	46	9.8645
(((((.....)))))	chr11:75111418-75111625(+)$1	1	83	98	10.4801
(.(((.....))).)	chr11:122929983-122930187(-)$1	1	162	177	10.3670
(((((.....)))))	chr11:75111425-75111677(+)$1	1	76	91	10.4801
(((((.....)))))	chr4:74283154-74283398(+)$1	1	225	240	10.5390
(((((.....)))))	chr12:9243905-9244124(-)$1	1	29	44	10.5390
(((((.....)))))	chr19:5140264-5140509(+)$1	1	67	82	9.8593
(.(((.....))).)	chr11:122929949-122930154(-)$1	1	129	144	10.3670
(((((.....)))))	chr11:93464070-93464283(-)$1	1	188	203	10.5390
(((((.....)))))	chr11:75111395-75111603(+)$1	1	106	121	10.4801
(((((.....)))))	chr11:75111404-75111618(+)$1	1	97	112	10.4801
.((((.....)))).	chr17:8076740-8076946(-)$1	1	115	130	11.3944
(((((.....)))))	chr6:31508793-31509034(-)$1	1	12	27	9.8645

#PSSM
[ : 0.23	f : 0.18	e : 0.15	d : 0.13	i : 0.11	g : 0.11	h : 0.03	: : 0.01	" : 0.01	
d : 0.36	f : 0.18	[ : 0.15	i : 0.11	g : 0.11	e : 0.06	
d : 0.36	f : 0.18	c : 0.15	i : 0.11	g : 0.11	e : 0.06	
d : 0.36	f : 0.18	c : 0.15	i : 0.11	g : 0.11	e : 0.06	
d : 0.36	f : 0.18	c : 0.15	i : 0.11	g : 0.11	e : 0.06	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
d : 0.36	f : 0.18	c : 0.15	i : 0.11	g : 0.11	e : 0.06	
d : 0.36	f : 0.18	c : 0.15	i : 0.11	g : 0.11	e : 0.06	
d : 0.36	f : 0.18	c : 0.15	i : 0.11	g : 0.11	e : 0.06	
d : 0.36	f : 0.18	] : 0.13	i : 0.11	g : 0.11	e : 0.06	3 : 0.01	
] : 0.26	f : 0.18	i : 0.11	g : 0.11	d : 0.09	e : 0.08	3 : 0.05	h : 0.03	E : 0.03	a : 0.01	

#score	631.8173202938068
#seq	60
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_CDS_m1_run2.txt

#BEAR
[eeeeea[ffffff[cccnnnnncccffffff22a]ee	chr17:80214237-80214490(-)$1	253	130	168	14.9950
[eeeeeffffffbb[bbmmmmbbbb]ffffff22eeee	chr2:38585687-38585938(-)$1	251	134	172	24.1094
dddd[eeeee[ccc[bbmmmmbb]ccc]eeeee]dddd	chr12:102110910-102111220(+)$1	310	157	195	18.1377
[eeeeeffffffbb[bbmmmmbbbb]ffffff]eeeee	chr2:242263715-242263929(+)$1	214	134	172	23.2165
ee!!==========[bbmmmmbb==========eeeee	chr12:11183763-11184048(-)$1	285	173	211	20.4554
eeeeedddd[ccc!!bbmmmmbb22ccc]dddd22eee	chr12:107360949-107361161(+)$1	212	134	172	21.3126
fff!!a[==========mmmm==========]a22fff	chr8:64101182-64101435(+)$1	253	47	85	16.5262
eeeeedddd[ccc!!bbmmmmbb22ccc]dddd22eee	chr12:107360961-107361220(+)$1	259	122	160	21.3126
[eeeeeffffffbb[bbmmmmbbbb]ffffff]eeeee	chr2:242263731-242263967(+)$1	236	118	156	23.2165
[ddddccc[cccbb[bbmmmmbbbb]ccc]ccc22ddd	chr2:150428701-150428955(-)$1	254	132	170	20.9041

#otherMatches

#Seq PSSM
cuggagcacaguggugccaucacggcucacugcagccu	chr17:80214237-80214490(-)$1	253	130	168	14.9950
uggggugcaguggcacggucucggcucacugcaagcuc	chr2:38585687-38585938(-)$1	251	134	172	24.1094
CAGUAGUUUCAUAAAAGUUGGCUCUUAGGAGGCCACUG	chr12:102110910-102111220(+)$1	310	157	195	18.1377
uggagugcaguggcaugaucucagcucacugcaacuuc	chr2:242263715-242263929(+)$1	214	134	172	23.2165
AAAUUUUGCUAAUGGCUUCAUAGCAUUGGUAAAUUCCA	chr12:11183763-11184048(-)$1	285	173	211	20.4554
uggagugcaauggcacgaucuuggcccacugcaaccuc	chr12:107360949-107361161(+)$1	212	134	172	21.3126
AAAUuacauauauauauauauauauauauauuuuuuuu	chr8:64101182-64101435(+)$1	253	47	85	16.5262
uggagugcaauggcacgaucuuggcccacugcaaccuc	chr12:107360961-107361220(+)$1	259	122	160	21.3126
uggagugcaguggcaugaucucagcucacugcaacuuc	chr2:242263731-242263967(+)$1	236	118	156	23.2165
cggagugcuguggcaugaucucagcucacugcaaucuc	chr2:150428701-150428955(-)$1	254	132	170	20.9041

#DB
.((((((.((((((.(((.....)))))))))..).))	chr17:80214237-80214490(-)$1	1	130	168	14.9950
.(((((((((((((.((....)))).))))))..))))	chr2:38585687-38585938(-)$1	1	134	172	24.1094
((((.(((((.(((.((....)).))).))))).))))	chr12:102110910-102111220(+)$1	1	157	195	18.1377
.(((((((((((((.((....)))).)))))).)))))	chr2:242263715-242263929(+)$1	1	134	172	23.2165
((..((((((((((.((....)))))))))))))))))	chr12:11183763-11184048(-)$1	1	173	211	20.4554
(((((((((.(((..((....))..))).))))..)))	chr12:107360949-107361161(+)$1	1	134	172	21.3126
(((..(.((((((((((....)))))))))).)..)))	chr8:64101182-64101435(+)$1	1	47	85	16.5262
(((((((((.(((..((....))..))).))))..)))	chr12:107360961-107361220(+)$1	1	122	160	21.3126
.(((((((((((((.((....)))).)))))).)))))	chr2:242263731-242263967(+)$1	1	118	156	23.2165
.(((((((.(((((.((....)))).))).)))..)))	chr2:150428701-150428955(-)$1	1	132	170	20.9041

#PSSM
[ : 0.50	e : 0.30	d : 0.10	f : 0.10	
e : 0.70	d : 0.20	f : 0.10	
e : 0.60	d : 0.20	! : 0.10	f : 0.10	
e : 0.60	d : 0.20	! : 0.20	
e : 0.60	[ : 0.10	= : 0.10	! : 0.10	d : 0.10	
e : 0.50	d : 0.20	= : 0.10	a : 0.10	c : 0.10	
f : 0.30	d : 0.20	a : 0.10	e : 0.10	= : 0.10	[ : 0.10	c : 0.10	
f : 0.30	= : 0.20	d : 0.20	[ : 0.10	e : 0.10	c : 0.10	
f : 0.40	= : 0.20	d : 0.20	e : 0.10	[ : 0.10	
f : 0.40	= : 0.20	[ : 0.20	e : 0.10	c : 0.10	
f : 0.40	c : 0.30	= : 0.20	[ : 0.10	
f : 0.40	c : 0.40	= : 0.20	
b : 0.40	c : 0.30	= : 0.20	f : 0.10	
b : 0.40	= : 0.20	! : 0.20	f : 0.10	c : 0.10	
[ : 0.70	! : 0.20	= : 0.10	
b : 0.79	c : 0.10	= : 0.10	
b : 0.79	c : 0.10	= : 0.10	
m : 0.89	c : 0.10	
m : 0.89	n : 0.10	
m : 0.89	n : 0.10	
m : 0.89	n : 0.10	
b : 0.79	n : 0.10	= : 0.10	
b : 0.79	n : 0.10	= : 0.10	
b : 0.40	= : 0.20	2 : 0.20	c : 0.10	] : 0.10	
b : 0.40	c : 0.20	= : 0.20	2 : 0.20	
c : 0.40	] : 0.40	= : 0.20	
f : 0.40	c : 0.40	= : 0.20	
f : 0.40	c : 0.30	= : 0.20	] : 0.10	
f : 0.40	= : 0.20	] : 0.20	e : 0.10	c : 0.10	
f : 0.40	= : 0.20	d : 0.20	e : 0.10	] : 0.10	
f : 0.40	= : 0.20	d : 0.20	e : 0.10	c : 0.10	
f : 0.40	d : 0.20	e : 0.10	= : 0.10	] : 0.10	c : 0.10	
2 : 0.20	] : 0.20	d : 0.20	e : 0.10	= : 0.10	a : 0.10	c : 0.10	
2 : 0.60	e : 0.30	] : 0.10	
e : 0.40	2 : 0.40	a : 0.10	d : 0.10	
e : 0.60	d : 0.20	] : 0.10	f : 0.10	
e : 0.70	d : 0.20	f : 0.10	
e : 0.70	d : 0.20	f : 0.10	

#score	204.1864826586801
#seq	10
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_CDS_m1_run1.txt

#BEAR
cc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]ccc]	chrM:10513-10722(+)$1	209	16	52	45.2747
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bbeee	chrM:10983-11186(+)$1	203	132	168	48.5797
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:3724-3938(+)$1	214	21	57	44.6211
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:3649-3867(+)$1	218	96	132	44.6211
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:3667-3882(+)$1	215	78	114	44.6211
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11952-12155(+)$1	203	22	58	46.0478
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11170-11374(+)$1	204	126	162	49.6145
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:9784-9991(+)$1	207	54	90	47.3768
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:3701-3906(+)$1	205	44	80	44.6211
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11245-11453(+)$1	208	51	87	49.6145
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11942-12152(+)$1	210	32	68	46.0478
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11932-12139(+)$1	207	42	78	46.0478
e^^^^^^^^^^^^^^^^^^^^^^^^^eeeeeggggg	chrM:9241-9457(+)$1	216	67	103	41.7795
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11185-11389(+)$1	204	111	147	49.6145
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11926-12129(+)$1	203	48	84	46.0478
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:3710-3924(+)$1	214	35	71	44.6211
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr19:41083788-41084110(+)$1	322	99	135	48.2806
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bbeee	chrM:11021-11256(+)$1	235	94	130	48.5797
cc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]ccc]	chrM:10481-10693(+)$1	212	48	84	45.2747
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bbeee	chrM:11056-11268(+)$1	212	59	95	48.5797
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11199-11403(+)$1	204	97	133	49.6145
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11968-12170(+)$1	202	6	42	46.0478
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11190-11393(+)$1	203	106	142	49.6145
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11955-12168(+)$1	213	19	55	46.0478
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11178-11385(+)$1	207	118	154	49.6145
dd[bb^^^^^^^^^^^^^^^^^^^^^^^^bb]dddd	chrM:12583-12795(+)$1	212	97	133	40.8101
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11152-11367(+)$1	215	144	180	49.6145
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11193-11397(+)$1	204	103	139	49.6145
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11167-11369(+)$1	202	129	165	49.6145
d^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd:	chr10:50534929-50535212(+)$1	283	243	279	46.6265
c^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc::	chrM:11144-11347(+)$1	203	131	167	46.4567
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11939-12142(+)$1	203	35	71	46.0478
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:9791-10002(+)$1	211	47	83	47.3768
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11890-12121(+)$1	231	84	120	46.0478
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11204-11417(+)$1	213	92	128	49.6145
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:9779-9984(+)$1	205	59	95	47.3768
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chrM:11921-12125(+)$1	204	53	89	46.0478
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:3738-3946(+)$1	208	7	43	44.6211
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11217-11426(+)$1	209	79	115	49.6145
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:9773-9979(+)$1	206	65	101	47.3768
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bbeee	chrM:11068-11271(+)$1	203	47	83	48.5797
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11226-11434(+)$1	208	70	106	49.6145
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chrM:9744-9973(+)$1	229	94	130	47.3768
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:6291-6503(+)$1	212	124	160	49.6145
cc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]ccc]	chrM:10493-10713(+)$1	220	36	72	45.2747
b^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb22d	chrM:7139-7344(+)$1	205	146	182	47.1790
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11197-11399(+)$1	202	99	135	49.6145
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:3682-3901(+)$1	219	63	99	44.6211
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc44	chrX:40531012-40531301(-)$1	289	215	251	46.7329
cc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]ccc]	chrM:10463-10668(+)$1	205	66	102	45.2747

#otherMatches

#Seq PSSM
AGUAUAUCGCUCACACCUCAUAUCCUCCCUACUAUG	chrM:10513-10722(+)$1	209	16	52	45.2747
AUAUCUUCUUCGAAACCACACUUAUCCCCACCUUGG	chrM:10983-11186(+)$1	203	132	168	48.5797
GCCAUCAUUCUACUAUCAACAUUACUAAUAAGUGGC	chrM:3724-3938(+)$1	214	21	57	44.6211
GCCAUCAUUCUACUAUCAACAUUACUAAUAAGUGGC	chrM:3649-3867(+)$1	218	96	132	44.6211
GCCAUCAUUCUACUAUCAACAUUACUAAUAAGUGGC	chrM:3667-3882(+)$1	215	78	114	44.6211
AUACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11952-12155(+)$1	203	22	58	46.0478
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11170-11374(+)$1	204	126	162	49.6145
GCUCAACUUUCCUCACUAUCUGCUUCAUCCGCCAAC	chrM:9784-9991(+)$1	207	54	90	47.3768
GCCAUCAUUCUACUAUCAACAUUACUAAUAAGUGGC	chrM:3701-3906(+)$1	205	44	80	44.6211
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11245-11453(+)$1	208	51	87	49.6145
AUACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11942-12152(+)$1	210	32	68	46.0478
AUACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11932-12139(+)$1	207	42	78	46.0478
AUUUCACUUCCACUCCAUAACGCUCCUCAUACUAGG	chrM:9241-9457(+)$1	216	67	103	41.7795
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11185-11389(+)$1	204	111	147	49.6145
AUACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11926-12129(+)$1	203	48	84	46.0478
GCCAUCAUUCUACUAUCAACAUUACUAAUAAGUGGC	chrM:3710-3924(+)$1	214	35	71	44.6211
cacacacacacUCAACAUUUCCUCCACCCAUAUCAU	chr19:41083788-41084110(+)$1	322	99	135	48.2806
AUAUCUUCUUCGAAACCACACUUAUCCCCACCUUGG	chrM:11021-11256(+)$1	235	94	130	48.5797
AGUAUAUCGCUCACACCUCAUAUCCUCCCUACUAUG	chrM:10481-10693(+)$1	212	48	84	45.2747
AUAUCUUCUUCGAAACCACACUUAUCCCCACCUUGG	chrM:11056-11268(+)$1	212	59	95	48.5797
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11199-11403(+)$1	204	97	133	49.6145
AUACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11968-12170(+)$1	202	6	42	46.0478
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11190-11393(+)$1	203	106	142	49.6145
AUACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11955-12168(+)$1	213	19	55	46.0478
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11178-11385(+)$1	207	118	154	49.6145
AUCAGUUCUUCAAAUAUCUACUCAUUUUCCUAAUUA	chrM:12583-12795(+)$1	212	97	133	40.8101
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11152-11367(+)$1	215	144	180	49.6145
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11193-11397(+)$1	204	103	139	49.6145
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11167-11369(+)$1	202	129	165	49.6145
GCCCUUcucccucccucccuuccucccucUCCUGGC	chr10:50534929-50535212(+)$1	283	243	279	46.6265
CUCACUAAACAUUCUACUACUCACUCUCACUGCCCA	chrM:11144-11347(+)$1	203	131	167	46.4567
AUACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11939-12142(+)$1	203	35	71	46.0478
GCUCAACUUUCCUCACUAUCUGCUUCAUCCGCCAAC	chrM:9791-10002(+)$1	211	47	83	47.3768
AUACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11890-12121(+)$1	231	84	120	46.0478
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11204-11417(+)$1	213	92	128	49.6145
GCUCAACUUUCCUCACUAUCUGCUUCAUCCGCCAAC	chrM:9779-9984(+)$1	205	59	95	47.3768
AUACUCCCUCUACAUAUUUACCACAACACAAUGGGG	chrM:11921-12125(+)$1	204	53	89	46.0478
GCCAUCAUUCUACUAUCAACAUUACUAAUAAGUGGC	chrM:3738-3946(+)$1	208	7	43	44.6211
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11217-11426(+)$1	209	79	115	49.6145
GCUCAACUUUCCUCACUAUCUGCUUCAUCCGCCAAC	chrM:9773-9979(+)$1	206	65	101	47.3768
AUAUCUUCUUCGAAACCACACUUAUCCCCACCUUGG	chrM:11068-11271(+)$1	203	47	83	48.5797
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11226-11434(+)$1	208	70	106	49.6145
GCUCAACUUUCCUCACUAUCUGCUUCAUCCGCCAAC	chrM:9744-9973(+)$1	229	94	130	47.3768
UAAAACCCCCUGCCAUAACCCAAUACCAAACGCCCC	chrM:6291-6503(+)$1	212	124	160	49.6145
AGUAUAUCGCUCACACCUCAUAUCCUCCCUACUAUG	chrM:10493-10713(+)$1	220	36	72	45.2747
CUCUAACAGCAGUAAUAUUAAUAAUUUUCAUGAUUU	chrM:7139-7344(+)$1	205	146	182	47.1790
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11197-11399(+)$1	202	99	135	49.6145
GCCAUCAUUCUACUAUCAACAUUACUAAUAAGUGGC	chrM:3682-3901(+)$1	219	63	99	44.6211
UGUUCAACUUUCAAAUCCAAAAUACACACACACACC	chrX:40531012-40531301(-)$1	289	215	251	46.7329
AGUAUAUCGCUCACACCUCAUAUCCUCCCUACUAUG	chrM:10463-10668(+)$1	205	66	102	45.2747

#DB
((..........................))).))).	chrM:10513-10722(+)$1	1	16	52	45.2747
...............................)))))	chrM:10983-11186(+)$1	1	132	168	48.5797
(((((..........................)))))	chrM:3724-3938(+)$1	1	21	57	44.6211
(((((..........................)))))	chrM:3649-3867(+)$1	1	96	132	44.6211
(((((..........................)))))	chrM:3667-3882(+)$1	1	78	114	44.6211
((............................))))))	chrM:11952-12155(+)$1	1	22	58	46.0478
...............................)))))	chrM:11170-11374(+)$1	1	126	162	49.6145
((............................))))).	chrM:9784-9991(+)$1	1	54	90	47.3768
(((((..........................)))))	chrM:3701-3906(+)$1	1	44	80	44.6211
...............................)))))	chrM:11245-11453(+)$1	1	51	87	49.6145
((............................))))))	chrM:11942-12152(+)$1	1	32	68	46.0478
((............................))))))	chrM:11932-12139(+)$1	1	42	78	46.0478
(.........................))))))))))	chrM:9241-9457(+)$1	1	67	103	41.7795
...............................)))))	chrM:11185-11389(+)$1	1	111	147	49.6145
((............................))))))	chrM:11926-12129(+)$1	1	48	84	46.0478
(((((..........................)))))	chrM:3710-3924(+)$1	1	35	71	44.6211
.................................)))	chr19:41083788-41084110(+)$1	1	99	135	48.2806
...............................)))))	chrM:11021-11256(+)$1	1	94	130	48.5797
((..........................))).))).	chrM:10481-10693(+)$1	1	48	84	45.2747
...............................)))))	chrM:11056-11268(+)$1	1	59	95	48.5797
...............................)))))	chrM:11199-11403(+)$1	1	97	133	49.6145
((............................))))))	chrM:11968-12170(+)$1	1	6	42	46.0478
...............................)))))	chrM:11190-11393(+)$1	1	106	142	49.6145
((............................))))))	chrM:11955-12168(+)$1	1	19	55	46.0478
...............................)))))	chrM:11178-11385(+)$1	1	118	154	49.6145
((.((........................)).))))	chrM:12583-12795(+)$1	1	97	133	40.8101
...............................)))))	chrM:11152-11367(+)$1	1	144	180	49.6145
...............................)))))	chrM:11193-11397(+)$1	1	103	139	49.6145
...............................)))))	chrM:11167-11369(+)$1	1	129	165	49.6145
(..............................)))).	chr10:50534929-50535212(+)$1	1	243	279	46.6265
(..............................)))..	chrM:11144-11347(+)$1	1	131	167	46.4567
((............................))))))	chrM:11939-12142(+)$1	1	35	71	46.0478
((............................))))).	chrM:9791-10002(+)$1	1	47	83	47.3768
((............................))))))	chrM:11890-12121(+)$1	1	84	120	46.0478
...............................)))))	chrM:11204-11417(+)$1	1	92	128	49.6145
((............................))))).	chrM:9779-9984(+)$1	1	59	95	47.3768
((............................))))))	chrM:11921-12125(+)$1	1	53	89	46.0478
(((((..........................)))))	chrM:3738-3946(+)$1	1	7	43	44.6211
...............................)))))	chrM:11217-11426(+)$1	1	79	115	49.6145
((............................))))).	chrM:9773-9979(+)$1	1	65	101	47.3768
...............................)))))	chrM:11068-11271(+)$1	1	47	83	48.5797
...............................)))))	chrM:11226-11434(+)$1	1	70	106	49.6145
((............................))))).	chrM:9744-9973(+)$1	1	94	130	47.3768
...............................)))))	chrM:6291-6503(+)$1	1	124	160	49.6145
((..........................))).))).	chrM:10493-10713(+)$1	1	36	72	45.2747
(..............................))..)	chrM:7139-7344(+)$1	1	146	182	47.1790
...............................)))))	chrM:11197-11399(+)$1	1	99	135	49.6145
(((((..........................)))))	chrM:3682-3901(+)$1	1	63	99	44.6211
(((............................)))..	chrX:40531012-40531301(-)$1	1	215	251	46.7329
((..........................))).))).	chrM:10463-10668(+)$1	1	66	102	45.2747

#PSSM
^ : 0.38	h : 0.18	f : 0.14	c : 0.12	e : 0.12	d : 0.04	b : 0.02	
^ : 0.46	h : 0.18	f : 0.14	c : 0.10	e : 0.10	d : 0.02	
^ : 0.82	f : 0.14	[ : 0.02	c : 0.02	
^ : 0.84	f : 0.14	b : 0.02	
^ : 0.84	f : 0.14	b : 0.02	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.98	e : 0.02	
^ : 0.98	e : 0.02	
^ : 0.90	c : 0.08	e : 0.02	
^ : 0.88	c : 0.08	e : 0.02	b : 0.02	
^ : 0.60	h : 0.18	e : 0.12	c : 0.08	b : 0.02	
f : 0.42	h : 0.18	] : 0.10	b : 0.10	e : 0.10	c : 0.04	g : 0.02	^ : 0.02	d : 0.02	
f : 0.42	h : 0.18	c : 0.12	b : 0.10	e : 0.10	d : 0.04	g : 0.02	^ : 0.02	
f : 0.42	e : 0.18	h : 0.18	c : 0.14	d : 0.04	g : 0.02	2 : 0.02	
f : 0.42	e : 0.18	h : 0.18	c : 0.10	d : 0.04	g : 0.02	: : 0.02	2 : 0.02	4 : 0.02	
f : 0.42	] : 0.18	h : 0.18	e : 0.08	d : 0.04	: : 0.04	g : 0.02	c : 0.02	4 : 0.02	

#score	2351.5501971304557
#seq	50
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_CDS_m1_run2.txt

#BEAR
afffffftttttttttttffffff]a	chr8:61193486-61193807(-)$1	321	187	213	21.4657
ddddyyyyyyyyyyyyyyyydddd]e	chr15:41371795-41372037(-)$1	242	43	69	21.5102
cc[cccxxxxxxxxxxxxxxxccc]c	chrX:153676999-153677204(+)$1	205	151	177	19.0287
b[eeeeeyyyyyyyyyyyyyyyyeee	chrX:53563472-53563723(-)$1	251	13	39	21.4066
a[eeeeewwwwwwwwwwwwwweeeee	chr21:38560755-38560975(+)$1	220	45	71	22.6975
cc[a[ccctttttttttttccc]a]c	chr14:102550988-102551196(-)$1	208	59	85	23.0330
dd[cccxxxxxxxxxxxxxxxccc]d	chr17:37360793-37361039(+)$1	246	96	122	18.7779
:ffffffuuuuuuuuuuuuffffff:	chr1:32792465-32792722(+)$1	257	77	103	20.9475
ccceeeeettttttttttteeeee]c	chr6:31639547-31639852(+)$1	305	60	86	22.7117
ddd!!bbvvvvvvvvvvvvvbb22dd	chr2:232325089-232325294(-)$1	205	53	79	21.5304
gggggggtttttttttttggggggg4	chr13:47365390-47365655(-)$1	265	49	75	21.8337
:ffffffuuuuuuuuuuuuffffff:	chr11:43465556-43465862(+)$1	306	49	75	20.9475
b"""ddddtttttttttttdddd22b	chr12:6690356-6690561(-)$1	205	126	152	21.5882
effffffuuuuuuuuuuuuffffff:	chr3:12880897-12881111(-)$1	214	43	69	21.7391
###ddddtttttttttttdddd333d	chr1:222827483-222827714(+)$1	231	122	148	22.3399
cc[ddddtttttttttttdddd]ccc	chr2:180835280-180835574(-)$1	294	90	116	22.0529
[bb[cccuuuuuuuuuuuuccc]bb]	chr20:47682627-47682885(+)$1	258	57	83	22.9777
gggggwwwwwwwwwwwwwwggggggg	chr2:220368709-220369070(+)$1	361	248	274	21.8668
c!!ddddvvvvvvvvvvvvvdddd22	chr7:99695356-99695632(-)$1	276	193	219	23.4170
dd[eeeeettttttttttteeeee]d	chr3:14225378-14225612(+)$1	234	61	87	22.7122
ee[dddduuuuuuuuuuuuddddeee	chr19:49658122-49658354(-)$1	232	56	82	23.5720
dddd[ccctttttttttttccc]ddd	chr6:35837403-35837680(-)$1	277	14	40	22.0823
ddddbbwwwwwwwwwwwwwwbb]ddd	chr1:109823637-109823900(-)$1	263	192	218	21.0625
e[eeeeeuuuuuuuuuuuueeeee]e	chr17:73664566-73664782(+)$1	216	177	203	24.3981
eeeeeyyyyyyyyyyyyyyyyeeeee	chr14:73577521-73577781(+)$1	260	154	180	21.9788
iiiiiiiitttttttttttiiiiiii	chr7:8198078-8198383(-)$1	305	136	162	21.8778
:eeeeevvvvvvvvvvvvveeeee::	chr7:6080558-6080803(-)$1	245	16	42	20.4593
c[bb[bbyyyyyyyyyyyyyyyybb]	chr19:47763494-47763780(+)$1	286	85	111	19.9018
hhhhhhyyyyyyyyyyyyyyyyhhhh	chr6:35836766-35836987(-)$1	221	136	162	20.4376
ggg[cccvvvvvvvvvvvvvccc]gg	chr17:47013422-47013705(-)$1	283	210	236	23.4412
ffffffwwwwwwwwwwwwwwffffff	chr1:182827214-182827475(+)$1	261	3	29	21.3925
#fffffftttttttttttffffff33	chr4:76573720-76573962(-)$1	242	31	57	21.5813
hhhhhhhvvvvvvvvvvvvvhhhhhh	chr12:95879554-95879758(+)$1	204	51	77	21.0148
ddddyyyyyyyyyyyyyyyydddd33	chr3:47047813-47048057(+)$1	244	129	155	21.6012
gg[dddduuuuuuuuuuuudddd22g	chr1:41474406-41474663(+)$1	257	143	169	23.7859
b!!eeeeettttttttttteeeee22	chr2:27607752-27607978(-)$1	226	76	102	22.7333
""eeeeeuuuuuuuuuuuueeeee]a	chr21:33979913-33980126(-)$1	213	40	66	24.5795
[a[cccvvvvvvvvvvvvvccc]a]i	chr20:61542031-61542369(-)$1	338	138	164	23.6870
ffffffvvvvvvvvvvvvvffffff]	chr12:122701194-122701475(-)$1	281	161	187	21.8705
==!!cccvvvvvvvvvvvvvccc22=	chr12:14947389-14947652(-)$1	263	191	217	23.6483
gggggggvvvvvvvvvvvvvgggggg	chr21:34931942-34932185(+)$1	243	91	117	23.1096
##ddddwwwwwwwwwwwwwwdddd77	chrX:53438972-53439246(-)$1	274	159	185	21.4202
""eeeeettttttttttteeeee333	chr15:91524995-91525208(-)$1	213	13	39	22.9775
""eeeeeuuuuuuuuuuuueeeee22	chr1:38489116-38489403(+)$1	287	235	261	24.3497
hhhhhhhuuuuuuuuuuuuhhhhhhh	chr21:46275029-46275272(-)$1	243	163	189	21.2692
:gggggggtttttttttttggggggg	chr7:157000398-157000652(+)$1	254	95	121	21.0688
eeeeeyyyyyyyyyyyyyyyyeeeee	chr19:13065104-13065337(-)$1	233	180	206	21.9788
e!!dddduuuuuuuuuuuudddd333	chr9:131235864-131236110(+)$1	246	18	44	24.2608
ddd[cccwwwwwwwwwwwwwwccc]d	chr19:4447447-4447720(-)$1	273	143	169	22.3962
hhhhhhhvvvvvvvvvvvvvhhhhhh	chr11:77336693-77336917(-)$1	224	95	121	21.0148
"""dddduuuuuuuuuuuuddddeee	chr1:109241123-109241390(+)$1	267	81	107	23.8386
!!ddddwwwwwwwwwwwwwwdddd22	chr4:104101369-104101613(-)$1	244	116	142	22.7701
!!eeeeeuuuuuuuuuuuueeeee]i	chr8:11687694-11687938(+)$1	244	37	63	24.7140
""bb[avvvvvvvvvvvvvabb333c	chr16:11935664-11935872(-)$1	208	83	109	22.5702
ee!!ccctttttttttttccc22eee	chr5:132439557-132439808(+)$1	251	154	180	22.0480
[eeeeevvvvvvvvvvvvveeeee]h	chr12:124081099-124081362(+)$1	263	38	64	23.3873
!!eeeeexxxxxxxxxxxxxxxeeee	chr15:69072353-69072562(-)$1	209	143	169	18.6985
"ddddbbuuuuuuuuuuuubb22ddd	chr3:9495324-9495615(+)$1	291	164	190	22.1256
===dddduuuuuuuuuuuudddd]==	chr17:27001456-27001681(+)$1	225	133	159	23.7704
cc!!cccwwwwwwwwwwwwwwccc]c	chr5:137676873-137677196(+)$1	323	137	163	22.9173
eeee!!bbtttttttttttbbeeeee	chr10:51584621-51584972(+)$1	351	161	187	21.5628
ffffffwwwwwwwwwwwwwwffffff	chr1:6585812-6586164(-)$1	352	297	323	21.3925
d"""cccuuuuuuuuuuuuccc]ddd	chr12:133324623-133324901(-)$1	278	246	272	23.7532

#otherMatches

#Seq PSSM
GGGCUACGAGGAAGGUAAGUGGCCGC	chr8:61193486-61193807(-)$1	321	187	213	21.4657
UACUGGAAGAAAUAUGAGAAAGUAGA	chr15:41371795-41372037(-)$1	242	43	69	21.5102
CUUCCCUGUCCACAGUCUCCUGGGUG	chrX:153676999-153677204(+)$1	205	151	177	19.0287
CACAGUCUCUCACUCACACAAAUGAC	chrX:53563472-53563723(-)$1	251	13	39	21.4066
CGUACUUGAAAACUGGAAGGAGAGUG	chr21:38560755-38560975(+)$1	220	45	71	22.6975
GAAGAGCUCAACAAAACAAAGCCCAU	chr14:102550988-102551196(-)$1	208	59	85	23.0330
ACCAAGAAAUAAAACCUCCCACUUUG	chr17:37360793-37361039(+)$1	246	96	122	18.7779
GUGCUGUGAAACUUAAUAAGCAGCAG	chr1:32792465-32792722(+)$1	257	77	103	20.9475
GGAAGGGGUUAUCAGCUUUCCCCUCU	chr6:31639547-31639852(+)$1	305	60	86	22.7117
GGAAAUGGCCAAACAGAAAGCAGCUC	chr2:232325089-232325294(-)$1	205	53	79	21.5304
UUUUCAGUAACUAAUUCUCUGGAAAU	chr13:47365390-47365655(-)$1	265	49	75	21.8337
AUUACAUUCCAGGUCAAACGUGUAAA	chr11:43465556-43465862(+)$1	306	49	75	20.9475
UGCCAUACUAAAGACAAAUGUGUAAG	chr12:6690356-6690561(-)$1	205	126	152	21.5882
UGCACAGACGCUAACCCACCUGUGUA	chr3:12880897-12881111(-)$1	214	43	69	21.7391
AAAAUCAAAUUAAGCAGAUGAUGGAU	chr1:222827483-222827714(+)$1	231	122	148	22.3399
UCAAGGACCACCCCAUUAUCCUAGAA	chr2:180835280-180835574(-)$1	294	90	116	22.0529
AUGUGGAUUUUGUGUUACUUCCUCAG	chr20:47682627-47682885(+)$1	258	57	83	22.9777
GUGACCCCAAGUACCCCCAGUCACGG	chr2:220368709-220369070(+)$1	361	248	274	21.8668
GAGAGGAAAUUCCGUUUACAUCCUAG	chr7:99695356-99695632(-)$1	276	193	219	23.4170
UAUGAUCAACAUUUAAAUAUGAUCUU	chr3:14225378-14225612(+)$1	234	61	87	22.7122
ACCAUCCAGAUGAGAACAAGGAUGUU	chr19:49658122-49658354(-)$1	232	56	82	23.5720
CCAUUGGCCAGGAUCAAACGCUUAUG	chr6:35837403-35837680(-)$1	277	14	40	22.0823
GUGGGAUUGACCCUGAAAUUUCUCCA	chr1:109823637-109823900(-)$1	263	192	218	21.0625
AAUUUCAUUUGUCAGAUUUUGGAACU	chr17:73664566-73664782(+)$1	216	177	203	24.3981
GCCUUGUCUGAAACCUACUCUGAGGC	chr14:73577521-73577781(+)$1	260	154	180	21.9788
UGACAAAUUGAAGAUGGAUGUUUGUC	chr7:8198078-8198383(-)$1	305	136	162	21.8778
CCCAGAAAAAGAAAAACGCUUUGGAG	chr7:6080558-6080803(-)$1	245	16	42	20.4593
GAUUGAGGAAGACCGUAAGAAAGCUG	chr19:47763494-47763780(+)$1	286	85	111	19.9018
UUGAGCCAAAAAAUGCAGAAAAGCUC	chr6:35836766-35836987(-)$1	221	136	162	20.4376
GAGGUCUUUAAAAUUCAGAUGGAACU	chr17:47013422-47013705(-)$1	283	210	236	23.4412
AAUCCUGACCUUACAUUAUAGGGAUU	chr1:182827214-182827475(+)$1	261	3	29	21.3925
UUUUAGCCAAGAGUCGAAGCUAAACC	chr4:76573720-76573962(-)$1	242	31	57	21.5813
UAAUUUUAUUUUUAACUACAGAAGUU	chr12:95879554-95879758(+)$1	204	51	77	21.0148
AAAGGAAGACAAGAccucaacuuuau	chr3:47047813-47048057(+)$1	244	129	155	21.6012
GUGGAGUUAGAAGGUGAUUAUUCGGG	chr1:41474406-41474663(+)$1	257	143	169	23.7859
GAGCUGCUGACACGCUACGGGCAGAA	chr2:27607752-27607978(-)$1	226	76	102	22.7333
UUUCAGAAGAGGCUUUGUAUUUGACA	chr21:33979913-33980126(-)$1	213	40	66	24.5795
ACAUCAAAGAUGAGGAGCCUGGAGAC	chr20:61542031-61542369(-)$1	338	138	164	23.6870
AGAGCUGAGGUAAGCAGAAAGUUCUA	chr12:122701194-122701475(-)$1	281	161	187	21.8705
GACUGUUCUUUUGCUUUUAUAACUAU	chr12:14947389-14947652(-)$1	263	191	217	23.6483
GAAAACAAAGAUGAUGAUAAUGUUUU	chr21:34931942-34932185(+)$1	243	91	117	23.1096
AGCACUACAAGAAGCGUAAAGGUGAC	chrX:53438972-53439246(-)$1	274	159	185	21.4202
CCAUCUUGCAACUAGAAAAAGAUUUG	chr15:91524995-91525208(-)$1	213	13	39	22.9775
CUAGUAACUUCAAAUUCCAUUACUCC	chr1:38489116-38489403(+)$1	287	235	261	24.3497
GCCUCCUUUUUGUCUGGUUGGGAGGC	chr21:46275029-46275272(-)$1	243	163	189	21.2692
GUUGGCUUAUCCAGAAACCAAGCCAG	chr7:157000398-157000652(+)$1	254	95	121	21.0688
GCUCCAGGACCUAGAGAAGAAGGAGC	chr19:13065104-13065337(-)$1	233	180	206	21.9788
UUCCAGGAGAAACAAAUGACCUGCAC	chr9:131235864-131236110(+)$1	246	18	44	24.2608
GAAGAUCAAGCUGCAGAACAAGGUGU	chr19:4447447-4447720(-)$1	273	143	169	22.3962
AGUGAUGAUGAUGUUGAACCUAUUAC	chr11:77336693-77336917(-)$1	224	95	121	21.0148
GUAUCUUUUGUGUUUCUGUAGGACCU	chr1:109241123-109241390(+)$1	267	81	107	23.8386
UCUUCCCUCACGUUGCAACAGGAAUU	chr4:104101369-104101613(-)$1	244	116	142	22.7701
UUAAUCUUCUUAUCUGUCUAGGUUUG	chr8:11687694-11687938(+)$1	244	37	63	24.7140
AAGGACUUUCAGAAAAAUUGCCAGAG	chr16:11935664-11935872(-)$1	208	83	109	22.5702
AAUUAAGGUAAUUUAAGACUUUUUUU	chr5:132439557-132439808(+)$1	251	154	180	22.0480
UUUGUCCUCAACAGUCAACGACAACA	chr12:124081099-124081362(+)$1	263	38	64	23.3873
GUGGAAUAACCUAUUUUGAAAAAUUC	chr15:69072353-69072562(-)$1	209	143	169	18.6985
ACUCAGCACCUAUACCAAAGCAAUGA	chr3:9495324-9495615(+)$1	291	164	190	22.1256
GACCUCAUUGAGGAGAAUUUGGGUGU	chr17:27001456-27001681(+)$1	225	133	159	23.7704
UCCUGGGGAGAAUCAUGAUAACCCUG	chr5:137676873-137677196(+)$1	323	137	163	22.9173
UGAUCAAGAUGAGAUGGACCUAUCAG	chr10:51584621-51584972(+)$1	351	161	187	21.5628
UGUCUCAAGCCUGACCACAAGAGACA	chr1:6585812-6586164(-)$1	352	297	323	21.3925
CGUGUCCACACAUCAGAUAGGAAGCU	chr12:133324623-133324901(-)$1	278	246	272	23.7532

#DB
(((((((...........)))))).)	chr8:61193486-61193807(-)$1	1	187	213	21.4657
((((................)))).)	chr15:41371795-41372037(-)$1	1	43	69	21.5102
((.(((...............))).)	chrX:153676999-153677204(+)$1	1	151	177	19.0287
(.(((((................)))	chrX:53563472-53563723(-)$1	1	13	39	21.4066
(.(((((..............)))))	chr21:38560755-38560975(+)$1	1	45	71	22.6975
((.(.(((...........))).).)	chr14:102550988-102551196(-)$1	1	59	85	23.0330
((.(((...............))).)	chr17:37360793-37361039(+)$1	1	96	122	18.7779
.((((((............)))))).	chr1:32792465-32792722(+)$1	1	77	103	20.9475
((((((((...........))))).)	chr6:31639547-31639852(+)$1	1	60	86	22.7117
(((..((.............))..))	chr2:232325089-232325294(-)$1	1	53	79	21.5304
(((((((...........))))))).	chr13:47365390-47365655(-)$1	1	49	75	21.8337
.((((((............)))))).	chr11:43465556-43465862(+)$1	1	49	75	20.9475
(...((((...........))))..)	chr12:6690356-6690561(-)$1	1	126	152	21.5882
)((((((............)))))).	chr3:12880897-12881111(-)$1	1	43	69	21.7391
...((((...........))))...)	chr1:222827483-222827714(+)$1	1	122	148	22.3399
((.((((...........)))).)))	chr2:180835280-180835574(-)$1	1	90	116	22.0529
.((.(((............))).)).	chr20:47682627-47682885(+)$1	1	57	83	22.9777
(((((..............)))))))	chr2:220368709-220369070(+)$1	1	248	274	21.8668
(..((((.............))))..	chr7:99695356-99695632(-)$1	1	193	219	23.4170
((.(((((...........))))).)	chr3:14225378-14225612(+)$1	1	61	87	22.7122
((.((((............)))))))	chr19:49658122-49658354(-)$1	1	56	82	23.5720
((((.(((...........))).)))	chr6:35837403-35837680(-)$1	1	14	40	22.0823
((((((..............)).)))	chr1:109823637-109823900(-)$1	1	192	218	21.0625
(.(((((............))))).)	chr17:73664566-73664782(+)$1	1	177	203	24.3981
(((((................)))))	chr14:73577521-73577781(+)$1	1	154	180	21.9788
((((((((...........)))))))	chr7:8198078-8198383(-)$1	1	136	162	21.8778
.(((((.............)))))..	chr7:6080558-6080803(-)$1	1	16	42	20.4593
(.((.((................)).	chr19:47763494-47763780(+)$1	1	85	111	19.9018
((((((................))))	chr6:35836766-35836987(-)$1	1	136	162	20.4376
(((.(((.............))).))	chr17:47013422-47013705(-)$1	1	210	236	23.4412
((((((..............))))))	chr1:182827214-182827475(+)$1	1	3	29	21.3925
.((((((...........))))))..	chr4:76573720-76573962(-)$1	1	31	57	21.5813
(((((((.............))))))	chr12:95879554-95879758(+)$1	1	51	77	21.0148
((((................))))..	chr3:47047813-47048057(+)$1	1	129	155	21.6012
((.((((............))))..)	chr1:41474406-41474663(+)$1	1	143	169	23.7859
(..(((((...........)))))..	chr2:27607752-27607978(-)$1	1	76	102	22.7333
..(((((............))))).)	chr21:33979913-33980126(-)$1	1	40	66	24.5795
.(.(((.............))).).)	chr20:61542031-61542369(-)$1	1	138	164	23.6870
((((((.............)))))).	chr12:122701194-122701475(-)$1	1	161	187	21.8705
((..(((.............)))..)	chr12:14947389-14947652(-)$1	1	191	217	23.6483
(((((((.............))))))	chr21:34931942-34932185(+)$1	1	91	117	23.1096
..((((..............))))..	chrX:53438972-53439246(-)$1	1	159	185	21.4202
..(((((...........)))))...	chr15:91524995-91525208(-)$1	1	13	39	22.9775
..(((((............)))))..	chr1:38489116-38489403(+)$1	1	235	261	24.3497
(((((((............)))))))	chr21:46275029-46275272(-)$1	1	163	189	21.2692
.(((((((...........)))))))	chr7:157000398-157000652(+)$1	1	95	121	21.0688
(((((................)))))	chr19:13065104-13065337(-)$1	1	180	206	21.9788
(..((((............))))...	chr9:131235864-131236110(+)$1	1	18	44	24.2608
(((.(((..............))).)	chr19:4447447-4447720(-)$1	1	143	169	22.3962
(((((((.............))))))	chr11:77336693-77336917(-)$1	1	95	121	21.0148
...((((............)))))))	chr1:109241123-109241390(+)$1	1	81	107	23.8386
..((((..............))))..	chr4:104101369-104101613(-)$1	1	116	142	22.7701
..(((((............))))).)	chr8:11687694-11687938(+)$1	1	37	63	24.7140
..((.(.............)))...)	chr16:11935664-11935872(-)$1	1	83	109	22.5702
((..(((...........)))..)))	chr5:132439557-132439808(+)$1	1	154	180	22.0480
.(((((.............))))).)	chr12:124081099-124081362(+)$1	1	38	64	23.3873
..(((((...............))))	chr15:69072353-69072562(-)$1	1	143	169	18.6985
.((((((............))..)))	chr3:9495324-9495615(+)$1	1	164	190	22.1256
(((((((............)))).))	chr17:27001456-27001681(+)$1	1	133	159	23.7704
((..(((..............))).)	chr5:137676873-137677196(+)$1	1	137	163	22.9173
((((..((...........)))))))	chr10:51584621-51584972(+)$1	1	161	187	21.5628
((((((..............))))))	chr1:6585812-6586164(-)$1	1	297	323	21.3925
(...(((............))).)))	chr12:133324623-133324901(-)$1	1	246	272	23.7532

#PSSM
d : 0.14	e : 0.12	c : 0.11	" : 0.09	g : 0.07	: : 0.06	h : 0.06	b : 0.04	# : 0.04	[ : 0.04	f : 0.04	! : 0.04	a : 0.03	= : 0.03	i : 0.01	
d : 0.14	f : 0.12	" : 0.11	e : 0.11	g : 0.09	! : 0.09	c : 0.07	[ : 0.06	h : 0.06	# : 0.03	= : 0.03	b : 0.01	i : 0.01	a : 0.01	
e : 0.20	d : 0.14	f : 0.12	[ : 0.12	! : 0.09	g : 0.07	h : 0.06	" : 0.04	b : 0.04	c : 0.01	# : 0.01	i : 0.01	= : 0.01	
e : 0.25	d : 0.23	f : 0.12	! : 0.06	g : 0.06	h : 0.06	c : 0.04	[ : 0.04	" : 0.03	b : 0.03	a : 0.01	i : 0.01	
e : 0.23	d : 0.19	c : 0.15	f : 0.12	[ : 0.06	g : 0.06	h : 0.06	y : 0.03	! : 0.03	b : 0.01	i : 0.01	
e : 0.20	c : 0.19	d : 0.17	f : 0.12	y : 0.06	b : 0.06	h : 0.06	g : 0.04	w : 0.01	i : 0.01	a : 0.01	! : 0.01	
e : 0.17	c : 0.14	d : 0.14	w : 0.09	f : 0.07	y : 0.07	v : 0.07	b : 0.06	g : 0.04	h : 0.04	x : 0.03	i : 0.01	
u : 0.25	v : 0.19	w : 0.14	t : 0.11	y : 0.11	x : 0.04	e : 0.04	c : 0.03	d : 0.01	i : 0.01	g : 0.01	b : 0.01	
t : 0.25	u : 0.25	v : 0.19	w : 0.14	y : 0.11	x : 0.04	
t : 0.25	u : 0.25	v : 0.19	w : 0.14	y : 0.11	x : 0.04	
t : 0.25	u : 0.25	v : 0.19	w : 0.14	y : 0.11	x : 0.04	
t : 0.25	u : 0.25	v : 0.19	w : 0.14	y : 0.11	x : 0.04	
t : 0.25	u : 0.25	v : 0.19	w : 0.14	y : 0.11	x : 0.04	
t : 0.25	u : 0.25	v : 0.19	w : 0.14	y : 0.11	x : 0.04	
t : 0.25	u : 0.25	v : 0.19	w : 0.14	y : 0.11	x : 0.04	
t : 0.25	u : 0.25	v : 0.19	w : 0.14	y : 0.11	x : 0.04	
t : 0.25	u : 0.25	v : 0.19	w : 0.14	y : 0.11	x : 0.04	
t : 0.25	u : 0.25	v : 0.19	w : 0.14	y : 0.11	x : 0.04	
u : 0.25	v : 0.19	w : 0.14	t : 0.14	y : 0.11	x : 0.04	f : 0.03	d : 0.03	g : 0.01	e : 0.01	c : 0.01	
e : 0.15	w : 0.12	d : 0.12	y : 0.11	v : 0.11	f : 0.09	c : 0.09	x : 0.04	g : 0.04	b : 0.03	i : 0.01	h : 0.01	a : 0.01	
d : 0.20	e : 0.15	f : 0.12	c : 0.12	y : 0.07	b : 0.07	g : 0.06	x : 0.04	w : 0.04	h : 0.04	i : 0.01	
e : 0.22	d : 0.20	c : 0.17	f : 0.12	g : 0.06	y : 0.04	b : 0.04	h : 0.04	2 : 0.03	i : 0.01	x : 0.01	
e : 0.23	d : 0.17	f : 0.12	] : 0.11	c : 0.09	g : 0.06	h : 0.06	2 : 0.04	y : 0.03	3 : 0.03	i : 0.01	
e : 0.28	d : 0.14	f : 0.12	c : 0.07	2 : 0.06	g : 0.06	3 : 0.06	h : 0.06	a : 0.03	b : 0.03	] : 0.03	i : 0.01	
] : 0.22	e : 0.14	2 : 0.11	f : 0.09	3 : 0.09	d : 0.07	g : 0.07	h : 0.06	b : 0.03	c : 0.01	i : 0.01	: : 0.01	7 : 0.01	= : 0.01	
e : 0.17	d : 0.14	c : 0.09	g : 0.07	h : 0.07	: : 0.06	2 : 0.06	3 : 0.06	] : 0.04	i : 0.04	a : 0.03	f : 0.03	= : 0.03	4 : 0.01	b : 0.01	7 : 0.01	

#score	1397.087377780455
#seq	63
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_UTR_m3_run1.txt

#BEAR
ffffoooooofff	chr2:170425609-170425868(-)$1	259	132	145	9.7100
ffffoooooofff	chr6:57005990-57006266(+)$1	276	227	240	9.7100
eeeeooooooeee	chr11:74976953-74977218(-)$1	265	62	75	11.2076
ggggooooooggg	chr5:65449177-65449427(+)$1	250	7	20	10.0447
eeeeooooooeee	chr18:9104018-9104240(+)$1	222	191	204	11.2076
eeeeooooooeee	chr20:5584944-5585197(-)$1	253	159	172	11.2076
ffffoooooofff	chr11:47189424-47189723(-)$1	299	143	156	9.7100
ddddooooooddd	chr22:45726365-45726634(+)$1	269	36	49	10.3711
eeeeooooooeee	chr9:131024850-131025110(-)$1	260	75	88	11.2076
ddddooooooddd	chr3:15127334-15127589(-)$1	255	176	189	10.3711
eeeeooooooeee	chr17:3727205-3727502(-)$1	297	31	44	11.2076
[cccooooooccc	chr17:61883774-61884037(+)$1	263	25	38	9.8319
ddddooooooddd	chr6:28870789-28871046(-)$1	257	88	101	10.3711
[cccooooooccc	chr11:3765732-3765991(-)$1	259	71	84	9.8319
ffffoooooofff	chr18:23658972-23659235(-)$1	263	58	71	9.7100
eeeaooooooa]e	chr10:28884513-28884764(+)$1	251	201	214	10.4807
ddddooooooddd	chr6:83896645-83896907(-)$1	262	180	193	10.3711
ggggooooooggg	chr4:79799769-79800025(+)$1	256	6	19	10.0447
eeeeooooooeee	chr4:184633641-184633897(+)$1	256	62	75	11.2076
ddddooooooddd	chr17:15406401-15406654(-)$1	253	178	191	10.3711
ddddooooooddd	chr11:93463738-93463989(-)$1	251	97	110	10.3711
ddddooooooddd	chr3:182662826-182663076(-)$1	250	15	28	10.3711
eeeeooooooeee	chr2:101885570-101885825(+)$1	255	234	247	11.2076
fcccooooooccc	chr3:20016982-20017259(+)$1	277	178	191	9.8209
iiiiooooooiii	chr5:126883846-126884129(+)$1	283	47	60	9.7674
eeeeooooooeee	chr8:124361504-124361783(-)$1	279	208	221	11.2076
eeeeooooooeee	chr1:151611249-151611516(+)$1	267	127	140	11.2076
ddddooooooddd	chr2:97285347-97285606(-)$1	259	28	41	10.3711
ddddooooooddd	chr18:55226356-55226628(-)$1	272	181	194	10.3711
ddddooooooddd	chr4:68374692-68374941(-)$1	249	61	74	10.3711
ffffoooooofff	chr17:74730517-74730755(-)$1	238	29	42	9.7100
eeeeooooooeee	chr17:56082814-56083087(-)$1	273	159	172	11.2076
ff[aooooooa]f	chr12:53567422-53567696(-)$1	274	182	195	9.6262
eeeeooooooeee	chr5:87516369-87516647(-)$1	278	228	241	11.2076
ggggooooooggg	chr7:131163275-131163531(+)$1	256	239	252	10.0447
ffffoooooofff	chr12:121248549-121248802(-)$1	253	111	124	9.7100
ddddooooooddd	chr1:24999060-24999296(+)$1	236	141	154	10.3711
cc[aooooooa]c	chr12:62954155-62954413(+)$1	258	234	247	9.6159
ddddooooooddd	chr2:118860660-118860914(+)$1	254	120	133	10.3711
eeeeooooooeee	chr1:21102342-21102589(-)$1	247	212	225	11.2076
ffffoooooofff	chr5:179045183-179045469(-)$1	286	33	46	9.7100
ggggooooooggg	chr7:148516021-148516267(-)$1	246	160	173	10.0447
eeeeooooooeee	chr17:79534426-79534671(-)$1	245	12	25	11.2076
eeeeooooooeee	chr17:25635499-25635761(+)$1	262	244	257	11.2076
ddddooooooddd	chr7:30407069-30407363(+)$1	294	73	86	10.3711
eeeeooooooeee	chr4:169923204-169923466(-)$1	262	59	72	11.2076
hcccooooooccc	chr19:8026973-8027222(-)$1	249	202	215	9.6708
eeeeooooooeee	chr22:19462974-19463241(-)$1	267	139	152	11.2076
[cccooooooccc	chr19:54972319-54972620(+)$1	301	177	190	9.8319
eeeeooooooeee	chr16:23502976-23503230(-)$1	254	34	47	11.2076
ggggooooooggg	chr6:87964257-87964504(+)$1	247	156	169	10.0447
eeeeooooooeee	chr17:25631699-25631950(+)$1	251	3	16	11.2076
ddddooooooddd	chr4:139104303-139104563(-)$1	260	208	221	10.3711
eeeeooooooeee	chr6:163986167-163986452(+)$1	285	153	166	11.2076
eeeeooooooeee	chr4:95494388-95494652(+)$1	264	21	34	11.2076
ggggooooooggg	chr12:132199014-132199280(+)$1	266	173	186	10.0447
eeeeooooooeee	chr10:30638057-30638310(-)$1	253	177	190	11.2076

#otherMatches

#Seq PSSM
UAGUUGAAGCACU	chr2:170425609-170425868(-)$1	259	132	145	9.7100
GAAAGAAUCAUUU	chr6:57005990-57006266(+)$1	276	227	240	9.7100
GAUGCUUACUCGU	chr11:74976953-74977218(-)$1	265	62	75	11.2076
CUUAAUUUCGUAA	chr5:65449177-65449427(+)$1	250	7	20	10.0447
CUCUGCUGUUGGA	chr18:9104018-9104240(+)$1	222	191	204	11.2076
CUUUGAAAUAAGA	chr20:5584944-5585197(-)$1	253	159	172	11.2076
CCUUUUCCUUAGG	chr11:47189424-47189723(-)$1	299	143	156	9.7100
UGAAUCCAUUUUC	chr22:45726365-45726634(+)$1	269	36	49	10.3711
GCAGUCCUUUCUG	chr9:131024850-131025110(-)$1	260	75	88	11.2076
CCACUAUGUUGUG	chr3:15127334-15127589(-)$1	255	176	189	10.3711
aauacaguacugu	chr17:3727205-3727502(-)$1	297	31	44	11.2076
CAGCUAAAAUGCU	chr17:61883774-61884037(+)$1	263	25	38	9.8319
AUGCUUAAGUGCA	chr6:28870789-28871046(-)$1	257	88	101	10.3711
GAUCUUCUGUGGU	chr11:3765732-3765991(-)$1	259	71	84	9.8319
UUUAUUUUCUUAA	chr18:23658972-23659235(-)$1	263	58	71	9.7100
UCUCAAACAAGCA	chr10:28884513-28884764(+)$1	251	201	214	10.4807
GGUAUGUAGUUAU	chr6:83896645-83896907(-)$1	262	180	193	10.3711
AAAUGAUUUGGUU	chr4:79799769-79800025(+)$1	256	6	19	10.0447
UUAUUAUAUUAUA	chr4:184633641-184633897(+)$1	256	62	75	11.2076
uccaaagcgcugg	chr17:15406401-15406654(-)$1	253	178	191	10.3711
CUAUUGUUAUGUA	chr11:93463738-93463989(-)$1	251	97	110	10.3711
GCUUAUGAGGAAG	chr3:182662826-182663076(-)$1	250	15	28	10.3711
CUGGUCUUUUCCG	chr2:101885570-101885825(+)$1	255	234	247	11.2076
GGUCAAGAACGAU	chr3:20016982-20017259(+)$1	277	178	191	9.8209
AAAGAUUUACCUU	chr5:126883846-126884129(+)$1	283	47	60	9.7674
AGGCCUGGUCGCU	chr8:124361504-124361783(-)$1	279	208	221	11.2076
GUUGAGGGGGCGA	chr1:151611249-151611516(+)$1	267	127	140	11.2076
AUAAUCUUCUUUA	chr2:97285347-97285606(-)$1	259	28	41	10.3711
UGGACCAUUUUCC	chr18:55226356-55226628(-)$1	272	181	194	10.3711
GUGAGCCAAAUCA	chr4:68374692-68374941(-)$1	249	61	74	10.3711
AGGUGAAAAGACU	chr17:74730517-74730755(-)$1	238	29	42	9.7100
GGGCCCAGAAGUC	chr17:56082814-56083087(-)$1	273	159	172	11.2076
GAGGUAAGCUUGU	chr12:53567422-53567696(-)$1	274	182	195	9.6262
UCAGCUUAGUCUG	chr5:87516369-87516647(-)$1	278	228	241	11.2076
CAUCAGGUGAGAU	chr7:131163275-131163531(+)$1	256	239	252	10.0447
AGGGCCUAUUCCC	chr12:121248549-121248802(-)$1	253	111	124	9.7100
GACCUUGUAUGGU	chr1:24999060-24999296(+)$1	236	141	154	10.3711
UCCCCUGUCAGAG	chr12:62954155-62954413(+)$1	258	234	247	9.6159
GGGUUAUUAUACC	chr2:118860660-118860914(+)$1	254	120	133	10.3711
cgauuucaucauc	chr1:21102342-21102589(-)$1	247	212	225	11.2076
GUCAGUUUCAUGG	chr5:179045183-179045469(-)$1	286	33	46	9.7100
UUUUGGACAGAAG	chr7:148516021-148516267(-)$1	246	160	173	10.0447
UUCAGUGUAUUGA	chr17:79534426-79534671(-)$1	245	12	25	11.2076
CUGGUAGUUUCUG	chr17:25635499-25635761(+)$1	262	244	257	11.2076
UGUUUUAUUUAAC	chr7:30407069-30407363(+)$1	294	73	86	10.3711
UUAAUUGAAUUUA	chr4:169923204-169923466(-)$1	262	59	72	11.2076
CGCAAGAAUGUGC	chr19:8026973-8027222(-)$1	249	202	215	9.6708
CCCUAUUCCCAGG	chr22:19462974-19463241(-)$1	267	139	152	11.2076
AGGCCGUCCAGCC	chr19:54972319-54972620(+)$1	301	177	190	9.8319
gcuaccucuuuag	chr16:23502976-23503230(-)$1	254	34	47	11.2076
CUCUUCGCUUGGA	chr6:87964257-87964504(+)$1	247	156	169	10.0447
acuccagccugag	chr17:25631699-25631950(+)$1	251	3	16	11.2076
GUGAGUGAGUUCA	chr4:139104303-139104563(-)$1	260	208	221	10.3711
GCUGCACCCACAG	chr6:163986167-163986452(+)$1	285	153	166	11.2076
CUAUAUUAUAAUA	chr4:95494388-95494652(+)$1	264	21	34	11.2076
UACUGACAAAAGU	chr12:132199014-132199280(+)$1	266	173	186	10.0447
GCCUAUCGUCAGG	chr10:30638057-30638310(-)$1	253	177	190	11.2076

#DB
((((......)))	chr2:170425609-170425868(-)$1	1	132	145	9.7100
((((......)))	chr6:57005990-57006266(+)$1	1	227	240	9.7100
((((......)))	chr11:74976953-74977218(-)$1	1	62	75	11.2076
((((......)))	chr5:65449177-65449427(+)$1	1	7	20	10.0447
((((......)))	chr18:9104018-9104240(+)$1	1	191	204	11.2076
((((......)))	chr20:5584944-5585197(-)$1	1	159	172	11.2076
((((......)))	chr11:47189424-47189723(-)$1	1	143	156	9.7100
((((......)))	chr22:45726365-45726634(+)$1	1	36	49	10.3711
((((......)))	chr9:131024850-131025110(-)$1	1	75	88	11.2076
((((......)))	chr3:15127334-15127589(-)$1	1	176	189	10.3711
((((......)))	chr17:3727205-3727502(-)$1	1	31	44	11.2076
.(((......)))	chr17:61883774-61884037(+)$1	1	25	38	9.8319
((((......)))	chr6:28870789-28871046(-)$1	1	88	101	10.3711
.(((......)))	chr11:3765732-3765991(-)$1	1	71	84	9.8319
((((......)))	chr18:23658972-23659235(-)$1	1	58	71	9.7100
((((......).)	chr10:28884513-28884764(+)$1	1	201	214	10.4807
((((......)))	chr6:83896645-83896907(-)$1	1	180	193	10.3711
((((......)))	chr4:79799769-79800025(+)$1	1	6	19	10.0447
((((......)))	chr4:184633641-184633897(+)$1	1	62	75	11.2076
((((......)))	chr17:15406401-15406654(-)$1	1	178	191	10.3711
((((......)))	chr11:93463738-93463989(-)$1	1	97	110	10.3711
((((......)))	chr3:182662826-182663076(-)$1	1	15	28	10.3711
((((......)))	chr2:101885570-101885825(+)$1	1	234	247	11.2076
)(((......)))	chr3:20016982-20017259(+)$1	1	178	191	9.8209
((((......)))	chr5:126883846-126884129(+)$1	1	47	60	9.7674
((((......)))	chr8:124361504-124361783(-)$1	1	208	221	11.2076
((((......)))	chr1:151611249-151611516(+)$1	1	127	140	11.2076
((((......)))	chr2:97285347-97285606(-)$1	1	28	41	10.3711
((((......)))	chr18:55226356-55226628(-)$1	1	181	194	10.3711
((((......)))	chr4:68374692-68374941(-)$1	1	61	74	10.3711
((((......)))	chr17:74730517-74730755(-)$1	1	29	42	9.7100
((((......)))	chr17:56082814-56083087(-)$1	1	159	172	11.2076
((.(......).)	chr12:53567422-53567696(-)$1	1	182	195	9.6262
((((......)))	chr5:87516369-87516647(-)$1	1	228	241	11.2076
((((......)))	chr7:131163275-131163531(+)$1	1	239	252	10.0447
((((......)))	chr12:121248549-121248802(-)$1	1	111	124	9.7100
((((......)))	chr1:24999060-24999296(+)$1	1	141	154	10.3711
((.(......).)	chr12:62954155-62954413(+)$1	1	234	247	9.6159
((((......)))	chr2:118860660-118860914(+)$1	1	120	133	10.3711
((((......)))	chr1:21102342-21102589(-)$1	1	212	225	11.2076
((((......)))	chr5:179045183-179045469(-)$1	1	33	46	9.7100
((((......)))	chr7:148516021-148516267(-)$1	1	160	173	10.0447
((((......)))	chr17:79534426-79534671(-)$1	1	12	25	11.2076
((((......)))	chr17:25635499-25635761(+)$1	1	244	257	11.2076
((((......)))	chr7:30407069-30407363(+)$1	1	73	86	10.3711
((((......)))	chr4:169923204-169923466(-)$1	1	59	72	11.2076
((((......)))	chr19:8026973-8027222(-)$1	1	202	215	9.6708
((((......)))	chr22:19462974-19463241(-)$1	1	139	152	11.2076
.(((......)))	chr19:54972319-54972620(+)$1	1	177	190	9.8319
((((......)))	chr16:23502976-23503230(-)$1	1	34	47	11.2076
((((......)))	chr6:87964257-87964504(+)$1	1	156	169	10.0447
((((......)))	chr17:25631699-25631950(+)$1	1	3	16	11.2076
((((......)))	chr4:139104303-139104563(-)$1	1	208	221	10.3711
((((......)))	chr6:163986167-163986452(+)$1	1	153	166	11.2076
((((......)))	chr4:95494388-95494652(+)$1	1	21	34	11.2076
((((......)))	chr12:132199014-132199280(+)$1	1	173	186	10.0447
((((......)))	chr10:30638057-30638310(-)$1	1	177	190	11.2076

#PSSM
e : 0.38	d : 0.24	f : 0.15	g : 0.10	[ : 0.05	i : 0.01	c : 0.01	h : 0.01	
e : 0.38	d : 0.24	f : 0.14	g : 0.10	c : 0.10	i : 0.01	
e : 0.38	d : 0.24	f : 0.12	g : 0.10	c : 0.08	[ : 0.03	i : 0.01	
e : 0.36	d : 0.24	f : 0.12	g : 0.10	c : 0.08	a : 0.05	i : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
e : 0.36	d : 0.24	f : 0.12	g : 0.10	c : 0.08	a : 0.05	i : 0.01	
e : 0.36	d : 0.24	f : 0.12	g : 0.10	c : 0.08	] : 0.05	i : 0.01	
e : 0.38	d : 0.24	f : 0.14	g : 0.10	c : 0.10	i : 0.01	

#score	597.2727392526097
#seq	57
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_UTR_m3_run1.txt

#BEAR
ggg[bbqqqqqqqqbb33	chr14:24651116-24651376(-)$1	260	149	167	13.0849
[eeeeeqqqqqqqqeeee	chr11:6630431-6630704(+)$1	273	225	243	14.7264
eeecccqqqqqqqqccc]	chr17:55187341-55187616(+)$1	275	148	166	14.2995
eee[bbqqqqqqqqbb33	chr8:22880094-22880384(-)$1	290	236	254	13.2555
!!ddddqqqqqqqqdddd	chrX:114877605-114877904(+)$1	299	184	202	14.3746
======qqqqqqqq====	chr11:57077577-57077832(-)$1	255	180	198	13.8503
[eeeeeqqqqqqqqeeee	chr17:73316329-73316584(-)$1	255	203	221	14.7264
$$ddddqqqqqqqqdddd	chr1:156303300-156303533(-)$1	233	19	37	13.7670
:eeeeeqqqqqqqqeeee	chr5:137909354-137909614(-)$1	260	174	192	13.7146
f!!cccqqqqqqqqccc2	chr2:86393580-86393819(-)$1	239	93	111	14.0306
!!ddddqqqqqqqqdddd	chr7:103002323-103002627(+)$1	304	186	204	14.3746
g:ddddqqqqqqqqdddd	chr3:10342763-10343158(-)$1	395	376	394	13.0581
##ddddqqqqqqqqdddd	chr9:75531735-75532010(-)$1	275	200	218	14.1715
ggggggqqqqqqqqgggg	chr17:47492095-47492324(-)$1	229	198	216	13.7905
ccc[bbqqqqqqqqbb]c	chr5:33460957-33461225(+)$1	268	3	21	12.8282
ee[cccqqqqqqqqccce	chr9:86587658-86587867(-)$1	209	130	148	14.3414
:eeeeeqqqqqqqqeeee	chr2:114697480-114697777(+)$1	297	161	179	13.7146
feeeeeqqqqqqqqeeee	chr11:18428563-18428802(+)$1	239	114	132	14.4987
ddd[bbqqqqqqqqbbdd	chr14:102549270-102549521(-)$1	251	213	231	13.0613
"""cccqqqqqqqqccc3	chr3:49720183-49720453(+)$1	270	167	185	14.1749
e[ddddqqqqqqqqdddd	chr8:11687731-11688002(+)$1	271	183	201	14.1454
:eeeeeqqqqqqqqeeee	chr5:138266417-138266648(+)$1	231	3	21	13.7146
d!!cccqqqqqqqqccc4	chr3:184017965-184018226(+)$1	261	148	166	14.1965
deeeeeqqqqqqqqeeee	chr12:58144956-58145225(-)$1	269	96	114	14.5077
bb[cccqqqqqqqqcccb	chrX:153586788-153587015(-)$1	227	95	113	13.2092
ffffffqqqqqqqqffff	chr19:47112356-47112624(+)$1	268	62	80	13.1085
eeecccqqqqqqqqccc3	chr2:54895745-54895982(+)$1	237	111	129	14.3159
ddddbbqqqqqqqqbb]d	chr16:8989471-8989697(-)$1	226	98	116	12.9650
geeeeeqqqqqqqqeeee	chr2:61719483-61719714(-)$1	231	150	168	14.6113
ggggggqqqqqqqqgggg	chr2:219294499-219294723(+)$1	224	68	86	13.7905
h[ddddqqqqqqqqdddd	chr17:12903370-12903646(-)$1	276	188	206	13.9440
dd[cccqqqqqqqqcccd	chr16:22295192-22295504(+)$1	312	146	164	14.0032
[eeeeeqqqqqqqqeeee	chr3:49140963-49141174(-)$1	211	153	171	14.7264
eeeeeeqqqqqqqqeeee	chr3:123367716-123368012(-)$1	296	142	160	14.5559
ggggggqqqqqqqqgggg	chr20:1434763-1435047(-)$1	284	18	36	13.7905
eeeeeaqqqqqqqqa]ee	chr3:52021251-52021500(+)$1	249	84	102	14.1959
ffffffqqqqqqqqffff	chr17:38144848-38145088(+)$1	240	104	122	13.1085
ffffffqqqqqqqqffff	chr9:33030337-33030595(+)$1	258	76	94	13.1085
ddd[bbqqqqqqqqbb]d	chr14:103987660-103987869(-)$1	209	180	198	12.9600
""ddddqqqqqqqqdddd	chr7:94294366-94294587(+)$1	221	68	86	14.2279
d!!cccqqqqqqqqccc2	chr7:5568049-5568327(-)$1	278	222	240	14.0395
===cccqqqqqqqqccc6	chr2:187370077-187370330(+)$1	253	149	167	13.6165
##ddddqqqqqqqqdddd	chr2:86705192-86705451(+)$1	259	199	217	14.1715
ggggggqqqqqqqqgggg	chr9:96050967-96051200(+)$1	233	184	202	13.7905
ee[cccqqqqqqqqccce	chr8:11667090-11667377(+)$1	287	154	172	14.3414
##ddddqqqqqqqqdddd	chr6:43492144-43492405(-)$1	261	204	222	14.1715
:eeeeeqqqqqqqqeeee	chr3:184020059-184020304(+)$1	245	114	132	13.7146
ggggggqqqqqqqqgggg	chr17:45678869-45679215(+)$1	346	243	261	13.7905
ddddddqqqqqqqqdddd	chrX:153580490-153580730(-)$1	240	105	123	13.8670
ccc[bbqqqqqqqqbb]c	chr19:16629988-16630261(-)$1	273	218	236	12.8282
ffffffqqqqqqqqffff	chr15:72491910-72492168(-)$1	258	12	30	13.1085
gggcccqqqqqqqqccc]	chr11:34120831-34121068(+)$1	237	176	194	14.1289
hhhcccqqqqqqqqccc2	chr3:127335776-127336033(+)$1	257	196	214	13.2793
ffffffqqqqqqqqffff	chrX:153582689-153582902(-)$1	213	123	141	13.1085
##ddddqqqqqqqqdddd	chr14:24707692-24707928(+)$1	236	144	162	14.1715
f:ddddqqqqqqqqdddd	chr11:122930723-122930967(-)$1	244	195	213	12.9456
[eeeeeqqqqqqqqeeee	chr10:120927848-120928123(-)$1	275	36	54	14.7264
e!!cccqqqqqqqqccc]	chr3:48637397-48637606(-)$1	209	181	199	14.2581
d[ddddqqqqqqqqdddd	chr2:26413845-26414075(-)$1	230	205	223	14.0972
dd[cccqqqqqqqqcccd	chr1:156286856-156287069(-)$1	213	38	56	14.0032
#eeeeeqqqqqqqqeeee	chr3:184045273-184045523(+)$1	250	31	49	14.6729
""ddddqqqqqqqqdddd	chr19:51848341-51848574(-)$1	233	96	114	14.2279
"eeeeeqqqqqqqqeeee	chr2:201677830-201678102(+)$1	272	177	195	14.6986
eeee[aqqqqqqqqa]ee	chr20:55949593-55949899(+)$1	306	9	27	14.0411
eee[bbqqqqqqqqbbee	chr17:43174438-43174708(+)$1	270	6	24	13.5665
:eeeeeqqqqqqqqeeee	chr17:7481044-7481247(+)$1	203	89	107	13.7146
:eeeeeqqqqqqqqeeee	chr2:74592630-74592884(-)$1	254	168	186	13.7146
!!ddddqqqqqqqqdddd	chr2:97525511-97525808(-)$1	297	114	132	14.3746
###cccqqqqqqqqcccc	chr2:114688786-114689026(+)$1	240	117	135	14.0155
ffffffqqqqqqqqffff	chr16:8866536-8866837(+)$1	301	108	126	13.1085
eee[bbqqqqqqqqbbee	chr2:211319730-211320138(-)$1	408	208	226	13.5665
heeeeeqqqqqqqqeeee	chr3:52263036-52263308(-)$1	272	111	129	14.3544
dddcccqqqqqqqqccc:	chr9:96002024-96002298(+)$1	274	219	237	12.9359
ffffffqqqqqqqqffff	chr16:30092479-30092709(+)$1	230	138	156	13.1085
Jeeeeeqqqqqqqqeeee	chr14:35482451-35482709(+)$1	258	48	66	13.1617
gggggaqqqqqqqqa]gg	chr14:77935355-77935616(+)$1	261	192	210	13.6306
"eeeeeqqqqqqqqeeee	chr2:74441105-74441385(+)$1	280	168	186	14.6986
d!!cccqqqqqqqqccc2	chr7:5567989-5568244(-)$1	255	139	157	14.0395
deeeeeqqqqqqqqeeee	chr21:35279542-35279852(-)$1	310	60	78	14.5077
b[ddddqqqqqqqqdddd	chr5:150505883-150506141(-)$1	258	57	75	13.9530
ffffffqqqqqqqqffff	chr14:75301905-75302200(+)$1	295	148	166	13.1085
[eeeeeqqqqqqqqeeee	chr18:43667350-43667558(-)$1	208	142	160	14.7264

#otherMatches

#Seq PSSM
AGGUGCGAAGCAAUGCCA	chr14:24651116-24651376(-)$1	260	149	167	13.0849
CUGGAAGCUGCUAGUUCC	chr11:6630431-6630704(+)$1	273	225	243	14.7264
CUCAUCAUCUGGGAGAUC	chr17:55187341-55187616(+)$1	275	148	166	14.2995
UUUACCUUUUUUCUGGAA	chr8:22880094-22880384(-)$1	290	236	254	13.2555
AACCAGGAUAUUGACUGG	chrX:114877605-114877904(+)$1	299	184	202	14.3746
GAGUUCAGAAAGAGGGAU	chr11:57077577-57077832(-)$1	255	180	198	13.8503
AGCUGCCUCUGACAGCAG	chr17:73316329-73316584(-)$1	255	203	221	14.7264
AAGCCCAAGAGUUAGGGC	chr1:156303300-156303533(-)$1	233	19	37	13.7670
UGAUAACUAGUACCUUAU	chr5:137909354-137909614(-)$1	260	174	192	13.7146
AGUGUCACUCUGCAGGCU	chr2:86393580-86393819(-)$1	239	93	111	14.0306
GACAUUGAAGAAGGGAUG	chr7:103002323-103002627(+)$1	304	186	204	14.3746
GGAGAUGCUUUGUAAUCU	chr3:10342763-10343158(-)$1	395	376	394	13.0581
AUUUUCAGGGCACAGGAA	chr9:75531735-75532010(-)$1	275	200	218	14.1715
CACUUUGGGCGAGGAGAG	chr17:47492095-47492324(-)$1	229	198	216	13.7905
GCAGUUUUAUUCUUAAGU	chr5:33460957-33461225(+)$1	268	3	21	12.8282
UUACAUUUGAUUUUAUGA	chr9:86587658-86587867(-)$1	209	130	148	14.3414
CUCCAGAACAAUCCUUGG	chr2:114697480-114697777(+)$1	297	161	179	13.7146
AAAGGAUGAUGUCUUCCU	chr11:18428563-18428802(+)$1	239	114	132	14.4987
CAUAGCCCAUUUUCGCAU	chr14:102549270-102549521(-)$1	251	213	231	13.0613
CAAAUCGCCCAUCAGAUA	chr3:49720183-49720453(+)$1	270	167	185	14.1749
UGUGCUAUUCCACAGGUA	chr8:11687731-11688002(+)$1	271	183	201	14.1454
CAGCCCAGGCCAUGGGGC	chr5:138266417-138266648(+)$1	231	3	21	13.7146
GGCAGAUUCGUUCUUCUA	chr3:184017965-184018226(+)$1	261	148	166	14.1965
UCAGGCUGAUGGACGUCU	chr12:58144956-58145225(-)$1	269	96	114	14.5077
GGACGUGGUAGACAACGC	chrX:153586788-153587015(-)$1	227	95	113	13.2092
CGGGCAGCUGGCGAUGCC	chr19:47112356-47112624(+)$1	268	62	80	13.1085
GUGGGGGAAACACACCUA	chr2:54895745-54895982(+)$1	237	111	129	14.3159
GGCUGCUAGAAAUUGUAA	chr16:8989471-8989697(-)$1	226	98	116	12.9650
UUGCAUCAAAUAUCAUGU	chr2:61719483-61719714(-)$1	231	150	168	14.6113
CUAGGACUGUUACAUCCU	chr2:219294499-219294723(+)$1	224	68	86	13.7905
ACAGAGCAGCCUUUCUUU	chr17:12903370-12903646(-)$1	276	188	206	13.9440
AGUCCCAAGCAAACGGGC	chr16:22295192-22295504(+)$1	312	146	164	14.0032
AUGCCUUUUCUUCUGGGC	chr3:49140963-49141174(-)$1	211	153	171	14.7264
AAUACUGAACAAAAAGUA	chr3:123367716-123368012(-)$1	296	142	160	14.5559
GAUAUAUAUAUCAUUGUA	chr20:1434763-1435047(-)$1	284	18	36	13.7905
ACCCCCACCUGAAAGAGG	chr3:52021251-52021500(+)$1	249	84	102	14.1959
UGAUCUGAUGCAGAAGAU	chr17:38144848-38145088(+)$1	240	104	122	13.1085
AUUUAAUUUUCUUUUUAA	chr9:33030337-33030595(+)$1	258	76	94	13.1085
CGACGACCACUUCCUCUU	chr14:103987660-103987869(-)$1	209	180	198	12.9600
ACCCAGAUCACCGCCUGG	chr7:94294366-94294587(+)$1	221	68	86	14.2279
GGCCGAGCGGGAAAUCGU	chr7:5568049-5568327(-)$1	278	222	240	14.0395
UUGCCUGGAAGAAAAGGA	chr2:187370077-187370330(+)$1	253	149	167	13.6165
UUUCAUGUGCUGCAGUGA	chr2:86705192-86705451(+)$1	259	199	217	14.1715
CCCCAGCAACCCUCCUGG	chr9:96050967-96051200(+)$1	233	184	202	13.7905
UGUGGAAAAGAAGGUCCC	chr8:11667090-11667377(+)$1	287	154	172	14.3414
AUGCACCUUCAAUAGUGC	chr6:43492144-43492405(-)$1	261	204	222	14.1715
CCUGAGCCUGAGAACUCA	chr3:184020059-184020304(+)$1	245	114	132	13.7146
GGUGAGUUCAGAAUCUUA	chr17:45678869-45679215(+)$1	346	243	261	13.7905
GCCCCUAGGGGAAGGGGG	chrX:153580490-153580730(-)$1	240	105	123	13.8670
CCUAUGAGAACUACCGCA	chr19:16629988-16630261(-)$1	273	218	236	12.8282
CCAGGUGCAAACCUGCCU	chr15:72491910-72492168(-)$1	258	12	30	13.1085
UUUCAGGAAACUUAUUGU	chr11:34120831-34121068(+)$1	237	176	194	14.1289
GGUCACGGAGGCUGGUGG	chr3:127335776-127336033(+)$1	257	196	214	13.2793
CCCUUCACCAUCAAGAAG	chrX:153582689-153582902(-)$1	213	123	141	13.1085
UGUGGAACAUACCAUCCG	chr14:24707692-24707928(+)$1	236	144	162	14.1715
CAUCGUAAAUUUAAAUGA	chr11:122930723-122930967(-)$1	244	195	213	12.9456
UGGUAAAGUCACAGUUAC	chr10:120927848-120928123(-)$1	275	36	54	14.7264
CCUGGCAUAGCGCAGCCU	chr3:48637397-48637606(-)$1	209	181	199	14.2581
AGUGGCAGCCAAGAGCCA	chr2:26413845-26414075(-)$1	230	205	223	14.0972
UCAGCACUACCUUAUGCG	chr1:156286856-156287069(-)$1	213	38	56	14.0032
UUGAGAGCUCCAAAUCUU	chr3:184045273-184045523(+)$1	250	31	49	14.6729
UUGGGCGGAUUUGAGCCC	chr19:51848341-51848574(-)$1	233	96	114	14.2279
AAUAUUUACGUUUUAAUG	chr2:201677830-201678102(+)$1	272	177	195	14.6986
GGUGGAACCUUCUCUGCG	chr20:55949593-55949899(+)$1	306	9	27	14.0411
UUGUCCAGCCUGCCGGCA	chr17:43174438-43174708(+)$1	270	6	24	13.5665
UUCUCUUCCAGCAUGGAG	chr17:7481044-7481247(+)$1	203	89	107	13.7146
GGAUGCAGAUGAGCGCAU	chr2:74592630-74592884(-)$1	254	168	186	13.7146
UCAGUGGUAUUUUAUACU	chr2:97525511-97525808(-)$1	297	114	132	14.3746
AAACAGGGAAUAUACUGC	chr2:114688786-114689026(+)$1	240	117	135	14.0155
UCUGAUUGUGAAAUAUCG	chr16:8866536-8866837(+)$1	301	108	126	13.1085
CCAUCACCUUCCUUUGUG	chr2:211319730-211320138(-)$1	408	208	226	13.5665
AGAGCUGACGGCAGAGUU	chr3:52263036-52263308(-)$1	272	111	129	14.3544
GUGGCCCAAGAGAUGGUA	chr9:96002024-96002298(+)$1	274	219	237	12.9359
ACUCGCCAGUCACAGUGA	chr16:30092479-30092709(+)$1	230	138	156	13.1085
UAGGAUCAAUAAAAAUCU	chr14:35482451-35482709(+)$1	258	48	66	13.1617
GAGGGCAUUAAACAGACC	chr14:77935355-77935616(+)$1	261	192	210	13.6306
CUAAUGAAGAAUACCAUU	chr2:74441105-74441385(+)$1	280	168	186	14.6986
GGCCGAGCGGGAAAUCGU	chr7:5567989-5568244(-)$1	255	139	157	14.0395
AGUUUCUUGUUACUGAGA	chr21:35279542-35279852(-)$1	310	60	78	14.5077
AUGACAUUCCUUCCUGUC	chr5:150505883-150506141(-)$1	258	57	75	13.9530
GAUCACAGAUGAAAGUGG	chr14:75301905-75302200(+)$1	295	148	166	13.1085
AUGCUGCCCCACUUCAGU	chr18:43667350-43667558(-)$1	208	142	160	14.7264

#DB
(((.((........))..	chr14:24651116-24651376(-)$1	1	149	167	13.0849
.(((((........))))	chr11:6630431-6630704(+)$1	1	225	243	14.7264
((((((........))).	chr17:55187341-55187616(+)$1	1	148	166	14.2995
(((.((........))..	chr8:22880094-22880384(-)$1	1	236	254	13.2555
..((((........))))	chrX:114877605-114877904(+)$1	1	184	202	14.3746
((((((........))))	chr11:57077577-57077832(-)$1	1	180	198	13.8503
.(((((........))))	chr17:73316329-73316584(-)$1	1	203	221	14.7264
..((((........))))	chr1:156303300-156303533(-)$1	1	19	37	13.7670
.(((((........))))	chr5:137909354-137909614(-)$1	1	174	192	13.7146
(..(((........))).	chr2:86393580-86393819(-)$1	1	93	111	14.0306
..((((........))))	chr7:103002323-103002627(+)$1	1	186	204	14.3746
).((((........))))	chr3:10342763-10343158(-)$1	1	376	394	13.0581
..((((........))))	chr9:75531735-75532010(-)$1	1	200	218	14.1715
((((((........))))	chr17:47492095-47492324(-)$1	1	198	216	13.7905
(((.((........)).)	chr5:33460957-33461225(+)$1	1	3	21	12.8282
((.(((........))))	chr9:86587658-86587867(-)$1	1	130	148	14.3414
.(((((........))))	chr2:114697480-114697777(+)$1	1	161	179	13.7146
((((((........))))	chr11:18428563-18428802(+)$1	1	114	132	14.4987
(((.((........))))	chr14:102549270-102549521(-)$1	1	213	231	13.0613
...(((........))).	chr3:49720183-49720453(+)$1	1	167	185	14.1749
(.((((........))))	chr8:11687731-11688002(+)$1	1	183	201	14.1454
.(((((........))))	chr5:138266417-138266648(+)$1	1	3	21	13.7146
(..(((........))).	chr3:184017965-184018226(+)$1	1	148	166	14.1965
((((((........))))	chr12:58144956-58145225(-)$1	1	96	114	14.5077
((.(((........))))	chrX:153586788-153587015(-)$1	1	95	113	13.2092
((((((........))))	chr19:47112356-47112624(+)$1	1	62	80	13.1085
((((((........))).	chr2:54895745-54895982(+)$1	1	111	129	14.3159
((((((........)).)	chr16:8989471-8989697(-)$1	1	98	116	12.9650
((((((........))))	chr2:61719483-61719714(-)$1	1	150	168	14.6113
((((((........))))	chr2:219294499-219294723(+)$1	1	68	86	13.7905
(.((((........))))	chr17:12903370-12903646(-)$1	1	188	206	13.9440
((.(((........))))	chr16:22295192-22295504(+)$1	1	146	164	14.0032
.(((((........))))	chr3:49140963-49141174(-)$1	1	153	171	14.7264
)(((((........))))	chr3:123367716-123368012(-)$1	1	142	160	14.5559
((((((........))))	chr20:1434763-1435047(-)$1	1	18	36	13.7905
((((((........).))	chr3:52021251-52021500(+)$1	1	84	102	14.1959
((((((........))))	chr17:38144848-38145088(+)$1	1	104	122	13.1085
((((((........))))	chr9:33030337-33030595(+)$1	1	76	94	13.1085
(((.((........)).)	chr14:103987660-103987869(-)$1	1	180	198	12.9600
..((((........))))	chr7:94294366-94294587(+)$1	1	68	86	14.2279
(..(((........))).	chr7:5568049-5568327(-)$1	1	222	240	14.0395
((((((........))).	chr2:187370077-187370330(+)$1	1	149	167	13.6165
..((((........))))	chr2:86705192-86705451(+)$1	1	199	217	14.1715
((((((........))))	chr9:96050967-96051200(+)$1	1	184	202	13.7905
((.(((........))))	chr8:11667090-11667377(+)$1	1	154	172	14.3414
..((((........))))	chr6:43492144-43492405(-)$1	1	204	222	14.1715
.(((((........))))	chr3:184020059-184020304(+)$1	1	114	132	13.7146
((((((........))))	chr17:45678869-45679215(+)$1	1	243	261	13.7905
((((((........))))	chrX:153580490-153580730(-)$1	1	105	123	13.8670
(((.((........)).)	chr19:16629988-16630261(-)$1	1	218	236	12.8282
((((((........))))	chr15:72491910-72492168(-)$1	1	12	30	13.1085
((((((........))).	chr11:34120831-34121068(+)$1	1	176	194	14.1289
((((((........))).	chr3:127335776-127336033(+)$1	1	196	214	13.2793
((((((........))))	chrX:153582689-153582902(-)$1	1	123	141	13.1085
..((((........))))	chr14:24707692-24707928(+)$1	1	144	162	14.1715
).((((........))))	chr11:122930723-122930967(-)$1	1	195	213	12.9456
.(((((........))))	chr10:120927848-120928123(-)$1	1	36	54	14.7264
(..(((........))).	chr3:48637397-48637606(-)$1	1	181	199	14.2581
(.((((........))))	chr2:26413845-26414075(-)$1	1	205	223	14.0972
((.(((........))))	chr1:156286856-156287069(-)$1	1	38	56	14.0032
.(((((........))))	chr3:184045273-184045523(+)$1	1	31	49	14.6729
..((((........))))	chr19:51848341-51848574(-)$1	1	96	114	14.2279
.(((((........))))	chr2:201677830-201678102(+)$1	1	177	195	14.6986
((((.(........).))	chr20:55949593-55949899(+)$1	1	9	27	14.0411
(((.((........))))	chr17:43174438-43174708(+)$1	1	6	24	13.5665
.(((((........))))	chr17:7481044-7481247(+)$1	1	89	107	13.7146
.(((((........))))	chr2:74592630-74592884(-)$1	1	168	186	13.7146
..((((........))))	chr2:97525511-97525808(-)$1	1	114	132	14.3746
...(((........))))	chr2:114688786-114689026(+)$1	1	117	135	14.0155
((((((........))))	chr16:8866536-8866837(+)$1	1	108	126	13.1085
(((.((........))))	chr2:211319730-211320138(-)$1	1	208	226	13.5665
)(((((........))))	chr3:52263036-52263308(-)$1	1	111	129	14.3544
)))(((........))).	chr9:96002024-96002298(+)$1	1	219	237	12.9359
((((((........))))	chr16:30092479-30092709(+)$1	1	138	156	13.1085
((((((........))))	chr14:35482451-35482709(+)$1	1	48	66	13.1617
((((((........).))	chr14:77935355-77935616(+)$1	1	192	210	13.6306
.(((((........))))	chr2:74441105-74441385(+)$1	1	168	186	14.6986
(..(((........))).	chr7:5567989-5568244(-)$1	1	139	157	14.0395
((((((........))))	chr21:35279542-35279852(-)$1	1	60	78	14.5077
(.((((........))))	chr5:150505883-150506141(-)$1	1	57	75	13.9530
((((((........))))	chr14:75301905-75302200(+)$1	1	148	166	13.1085
.(((((........))))	chr18:43667350-43667558(-)$1	1	142	160	14.7264

#PSSM
d : 0.15	e : 0.14	f : 0.13	g : 0.12	: : 0.07	# : 0.07	[ : 0.06	" : 0.06	! : 0.03	h : 0.03	= : 0.02	c : 0.02	b : 0.02	$ : 0.01	J : 0.01	
e : 0.36	g : 0.09	! : 0.09	f : 0.09	d : 0.08	# : 0.06	[ : 0.04	" : 0.03	= : 0.02	: : 0.02	c : 0.02	$ : 0.01	b : 0.01	h : 0.01	
e : 0.34	d : 0.25	g : 0.09	f : 0.09	! : 0.06	[ : 0.06	= : 0.02	c : 0.02	" : 0.01	h : 0.01	# : 0.01	
e : 0.28	c : 0.21	d : 0.21	[ : 0.09	f : 0.09	g : 0.07	= : 0.01	
e : 0.26	c : 0.21	d : 0.20	b : 0.10	f : 0.09	g : 0.07	= : 0.01	[ : 0.01	
e : 0.25	c : 0.21	d : 0.20	b : 0.10	f : 0.09	g : 0.06	a : 0.03	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
e : 0.25	c : 0.21	d : 0.20	b : 0.10	f : 0.09	g : 0.06	a : 0.03	= : 0.01	
e : 0.25	c : 0.21	d : 0.20	b : 0.10	f : 0.09	g : 0.06	] : 0.03	= : 0.01	
e : 0.30	c : 0.21	d : 0.21	f : 0.09	g : 0.07	] : 0.04	3 : 0.02	= : 0.01	
e : 0.32	d : 0.26	f : 0.09	g : 0.07	3 : 0.04	2 : 0.04	] : 0.03	c : 0.03	= : 0.01	4 : 0.01	b : 0.01	6 : 0.01	: : 0.01	

#score	1137.1169104771675
#seq	82
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_UTR_m2_run1.txt

#BEAR
hhhccc!!ddddoooooodddd22ccc]hh	chr3:167727746-167727993(-)$1	247	71	101	12.3316
[==========[annnnna]==========	chr15:91425078-91425337(+)$1	259	169	199	15.3369
e[bb[iiiiiiiiillliiiiiiiii]bb]	chr3:14530329-14530615(+)$1	286	223	253	11.8099
"bb[a[gggggggnnnnnggggggg]a]bb	chr17:53470109-53470364(-)$1	255	23	53	10.8500
ggggggg"""bbnnnnnbb333gggggggi	chr2:216225616-216225857(-)$1	241	182	212	11.8230
:===========nnnnn===========BB	chr10:64936945-64937205(-)$1	260	73	103	12.3732
============oooooo============	chr17:79801411-79801644(-)$1	233	99	129	17.5399
ggggggg!!ddddooooooddddggggggg	chr14:94770523-94770774(-)$1	251	31	61	13.0195
eee!!gggggggnnnnngggggggeeeee]	chr17:48828644-48828911(+)$1	267	161	191	10.4766
iiiiiiii[cccooooooccc22iiiiiii	chr12:66359832-66360090(+)$1	258	192	222	15.7178
:eeeee"""cccooooooccc4444eeeee	chr6:41704360-41704596(-)$1	236	0	30	12.1700
ddd[ccc[a[bboooooobb]a]ccc333d	chr5:137088363-137088622(-)$1	259	53	83	12.2561
==========[abbmmmmbb333a]=====	chr2:26616154-26616405(+)$1	251	185	215	12.2554
dd[dddd[ddddoooooodddd]dddd]dd	chr19:811529-811749(+)$1	220	180	210	11.2386
""==========oooooo==========22	chr10:90974238-90974498(-)$1	260	13	43	16.7365
cc####gggggggnnnnnggggggg4444c	chr12:124082139-124082381(+)$1	242	121	151	11.5654
b[==========mmmm==========]bbg	chr2:85770076-85770326(+)$1	250	121	151	12.7835
iii============lll============	chr20:43955066-43955321(-)$1	255	36	66	15.1923
cc[a!!ffffffooooooffffff22a]cc	chr3:149089428-149089676(-)$1	248	110	140	10.9734
###iiiiiiiiinnnnniiiiiiiii4444	chr20:34319686-34319943(-)$1	257	172	202	12.9843
ddddbb!!ddddoooooodddd22bb]ddd	chr4:77968828-77969100(-)$1	272	146	176	11.1863
===========[bblllbb]==========	chr20:4680562-4680830(+)$1	268	39	69	13.4883
ggggggg!!cccnnnnnccc22ggggggg:	chr10:15254151-15254429(-)$1	278	137	167	11.2444
iiiii[dddd[aooooooa]dddd]iiiii	chr16:2652997-2653270(+)$1	273	218	248	13.5178
============qqqqqqqq==========	chr17:56168128-56168397(+)$1	269	67	97	11.7475
:ggggggg"""aooooooa333ggggggg:	chr7:94298460-94298710(+)$1	250	201	231	12.9553
[===========mmmm===========]bb	chr3:30735328-30735571(+)$1	243	2	32	13.4462
ggggggg"""cccmmmmccc333ggggggg	chr20:2442197-2442448(-)$1	251	134	164	11.8138
====="""ddddoooooodddd========	chr1:235274365-235274610(-)$1	245	59	89	15.9177
:============nnnnn============	chr10:35858103-35858385(+)$1	282	49	79	14.6661
===========rrrrrrrrr==========	chr1:92145825-92146133(-)$1	308	213	243	13.4622
a!!ccc"""cccooooooccc333ccc22a	chr14:24114009-24114245(+)$1	236	129	159	14.3545
b[bb[==========lll==========]b	chr16:46964539-46964777(+)$1	238	191	221	13.5736
ggggggg!!ddddnnnnndddd22gggggg	chr6:7287987-7288260(-)$1	273	64	94	12.0996
gggdddd[ddddoooooodddd333dddd]	chr2:29170499-29170749(+)$1	250	60	90	12.4277
!ggggggg"""ddddlllddddggggggg]	chr2:231743677-231743951(+)$1	274	145	175	11.1626
========####ccclllccc333======	chr14:101201193-101201463(+)$1	270	119	149	13.7715
eeee####ddddoooooodddd4444eeee	chr2:20192623-20192913(-)$1	290	88	118	12.5771
[eeeee"""cccooooooccc]eeeeea]i	chr17:27076927-27077169(+)$1	242	89	119	12.9148
ccc####eeeeeooooooeeeee333ccc]	chr3:195777933-195778187(-)$1	254	92	122	12.5130
============oooooo============	chr7:45932745-45932962(+)$1	217	20	50	17.5399
d[eeeee!!cccooooooccc22eeeee]d	chr14:23495061-23495278(-)$1	217	16	46	12.4664
ff####gggggggnnnnnggggggg333ff	chr12:66357275-66357530(+)$1	255	99	129	11.3347
:ggggggg[ddddnnnnndddd]ggggggg	chr19:11244257-11244566(+)$1	309	134	164	11.0860
gg[bb[iiiiiiiiillliiiiiiiii]bb	chr17:79477321-79477580(-)$1	259	124	154	11.9270
ddd[ccc!!cccooooooccc22cccdddd	chr6:119500824-119501066(-)$1	242	158	188	12.7227
f[==========mmmm==========]fff	chr22:38202640-38202844(+)$1	204	148	178	12.8494
cc"""a!!ddddoooooodddd22a22ccc	chr8:22279566-22279779(+)$1	213	32	62	13.0284
ddggggggg!!cccmmmmccc]ggggggg]	chr2:71213224-71213439(-)$1	215	30	60	10.6177
ggg####eeeeeooooooeeeee333gggg	chr3:133307565-133307854(+)$1	289	186	216	13.0503
!!ccc"""ddddoooooodddd333ccc22	chr16:19132599-19132827(+)$1	228	154	184	13.7153
==========[aooooooa]==========	chr1:115292454-115292723(-)$1	269	107	137	17.0927
dddd[ccc!!bboooooobb22ccc]dddd	chr17:25635598-25635895(+)$1	297	69	99	11.0202
:===========oooooo===========:	chr7:94298332-94298569(+)$1	237	173	203	15.5606
[dddd"""ddddoooooodddd]ddddddd	chr17:66528664-66528933(+)$1	269	230	260	11.7797

#otherMatches

#Seq PSSM
GAAAUGCGCAUACAUUUAUAUGAAUAUAUU	chr3:167727746-167727993(-)$1	247	71	101	12.3316
CGGGCCCACCUGGCCACCUGAGGUGGGCCC	chr15:91425078-91425337(+)$1	259	169	199	15.3369
acuucaaaauauuuuuaagauauuuuaaac	chr3:14530329-14530615(+)$1	286	223	253	11.8099
CUUGGUUUGAUGAUAACCUUAUUAAUUGAA	chr17:53470109-53470364(-)$1	255	23	53	10.8500
UAUGGUGGGUGAUUAUUUUUUAUACUGUAU	chr2:216225616-216225857(-)$1	241	182	212	11.8230
UAAAGAAGGUAGGAUCUUUAUUUUCUUUGA	chr10:64936945-64937205(-)$1	260	73	103	12.3732
UUUGAAAAUUCCGUCUGUGGGAUUUUUAGA	chr17:79801411-79801644(-)$1	233	99	129	17.5399
CCCAGAGCCUCAGCACUGUCUGACUUUGGG	chr14:94770523-94770774(-)$1	251	31	61	13.0195
UAUCUUUUUUGUUCUUUACAAGAAGUGCAG	chr17:48828644-48828911(+)$1	267	161	191	10.4766
UUUGUUACAGUUCCAUUAAAUGAGUAAUAA	chr12:66359832-66360090(+)$1	258	192	222	15.7178
CGCCUAGACUUGCUGCCUCGACACGUGGGC	chr6:41704360-41704596(-)$1	236	0	30	12.1700
GACCUUGGUCGUUUUUAUACUAGCAAAAUG	chr5:137088363-137088622(-)$1	259	53	83	12.2561
UAGCUCUCUCACAGGUAGCUUAAGCGAGGG	chr2:26616154-26616405(+)$1	251	185	215	12.2554
CUAUCUUAGAGCCCCUGAGCUUCAGGGAAG	chr19:811529-811749(+)$1	220	180	210	11.2386
UUUUGUUUUUUUAUAUCCAAGAAAAUGAUA	chr10:90974238-90974498(-)$1	260	13	43	16.7365
AAUCUUGUUUUGUGUAAAAUGAAAUUACUU	chr12:124082139-124082381(+)$1	242	121	151	11.5654
UGUUGGGUGUGUGUGUAUAUACUUAAGGCU	chr2:85770076-85770326(+)$1	250	121	151	12.7835
AAAUGGAUUUAUAGAAUAUUUGUAAAUCUA	chr20:43955066-43955321(-)$1	255	36	66	15.1923
GCUCUUGGUGGAAUUGAAUUCAUCUUGUGU	chr3:149089428-149089676(-)$1	248	110	140	10.9734
UAUUUUUUUAAUGAUUGGUUAAAAAGUAUU	chr20:34319686-34319943(-)$1	257	172	202	12.9843
UGCAUGUUGAUCUAUAUUGAUUUUCACUGC	chr4:77968828-77969100(-)$1	272	146	176	11.1863
UUCCUCAUCUUCCUGAUAGUGGGAUGAGGA	chr20:4680562-4680830(+)$1	268	39	69	13.4883
CUCAGCGUCUCCCUUCAGGAACCGCUGAGU	chr10:15254151-15254429(-)$1	278	137	167	11.2444
UGACCCCGCCACGGAGUGGGGGCGCGGUUG	chr16:2652997-2653270(+)$1	273	218	248	13.5178
UGGGGGGGUGGGGGAUCCAGCUUAUUCUUU	chr17:56168128-56168397(+)$1	269	67	97	11.7475
CUUAUUUAGAGCGAAUUGGACAUGGAUAAA	chr7:94298460-94298710(+)$1	250	201	231	12.9553
UUUUUUUUUCUUAUUCAAGAAAAAAGACCA	chr3:30735328-30735571(+)$1	243	2	32	13.4462
UUAUAAUAAACUCUUAAGAGAACAUUAUAA	chr20:2442197-2442448(-)$1	251	134	164	11.8138
AUGUAUGUGGGCAACCAGGCCCUGCAUUUU	chr1:235274365-235274610(-)$1	245	59	89	15.9177
AAAAGACAGACUUGGGGUGGGUUUGUUUUU	chr10:35858103-35858385(+)$1	282	49	79	14.6661
AAGAUAUAUAUCAGUUAUUAAUAUGUGUCU	chr1:92145825-92146133(-)$1	308	213	243	13.4622
GCAGUUGAGUCUAUUGCAAGAGCAGACCCC	chr14:24114009-24114245(+)$1	236	129	159	14.3545
UUUACACAGUUUUUUAAAAAGAGACUGUAU	chr16:46964539-46964777(+)$1	238	191	221	13.5736
ggaaauguagaauuuauuauuugucauuuu	chr6:7287987-7288260(-)$1	273	64	94	12.0996
aaauauuuuuauaauuaaauaauuuaauGU	chr2:29170499-29170749(+)$1	250	60	90	12.4277
UCAGCCCUGAGCCUUGGAGAGGAGGGCUGU	chr2:231743677-231743951(+)$1	274	145	175	11.1626
GUUCGCUAUCUCUUGUGUCAAAUCUGGUGA	chr14:101201193-101201463(+)$1	270	119	149	13.7715
AAUACUCAUGCAUUCUUUUGCACACCUGUU	chr2:20192623-20192913(-)$1	290	88	118	12.5771
UCUGGUUAUUUAUUUCCUUAGUGCCAGGAG	chr17:27076927-27077169(+)$1	242	89	119	12.9148
UUAUUUUUGUUUCUUCCAAAGCACAUUGAA	chr3:195777933-195778187(-)$1	254	92	122	12.5130
uauauauauauguauauguauauauauaua	chr7:45932745-45932962(+)$1	217	20	50	17.5399
UGACUGUCAUUGGUAAUACGGACACAGUGA	chr14:23495061-23495278(-)$1	217	16	46	12.4664
CUAAUAGUUUGUUGAUCUGAUAAGCAAGAG	chr12:66357275-66357530(+)$1	255	99	129	11.3347
UGAGUGGCUUCUGGGAGAUGGGUGUCACUU	chr19:11244257-11244566(+)$1	309	134	164	11.0860
GUGUGGCUUGGUCACUUCGUGGCUAAGGUA	chr17:79477321-79477580(-)$1	259	124	154	11.9270
ACAUGAUGAACUUUGAUUAGUAGGUCUGUG	chr6:119500824-119501066(-)$1	242	158	188	12.7227
GAUGGGAGAAGCCAUAGUUUCUCCCAGUCA	chr22:38202640-38202844(+)$1	204	148	178	12.8494
GUUGAAUUUGCUGUUUCAAGCAUUUGUACA	chr8:22279566-22279779(+)$1	213	32	62	13.0284
AUUCUGGGUCCCAGCCUCCUGUAUCCAGAG	chr2:71213224-71213439(-)$1	215	30	60	10.6177
AUUGCUUGGUUAAUUAAGUAACCUAAAGUA	chr3:133307565-133307854(+)$1	289	186	216	13.0503
AUCAGAUAUGGUUCAGCUGCUACAAUUGUA	chr16:19132599-19132827(+)$1	228	154	184	13.7153
UGCUGUACUGUGAGAUUGCCCGGUACAGCA	chr1:115292454-115292723(-)$1	269	107	137	17.0927
UUAUCUCAAAGGGAGAUGCCAAUGGAGUAA	chr17:25635598-25635895(+)$1	297	69	99	11.0202
AAUUUUAAGUGGGUGGGGUUAUUUAGAAUG	chr7:94298332-94298569(+)$1	237	173	203	15.5606
UAAUUUAAAUUCUUAAAUGAAUCAGUUUUU	chr17:66528664-66528933(+)$1	269	230	260	11.7797

#DB
((((((..((((......))))..))).))	chr3:167727746-167727993(-)$1	1	71	101	12.3316
.((((((((((.(.....).))))))))))	chr15:91425078-91425337(+)$1	1	169	199	15.3369
(.((.(((((((((...))))))))).)).	chr3:14530329-14530615(+)$1	1	223	253	11.8099
.((.(.(((((((.....))))))).).))	chr17:53470109-53470364(-)$1	1	23	53	10.8500
(((((((...((.....))...))))))))	chr2:216225616-216225857(-)$1	1	182	212	11.8230
.(((((((((((.....)))))))))))))	chr10:64936945-64937205(-)$1	1	73	103	12.3732
((((((((((((......))))))))))))	chr17:79801411-79801644(-)$1	1	99	129	17.5399
(((((((..((((......)))))))))))	chr14:94770523-94770774(-)$1	1	31	61	13.0195
(((..(((((((.....)))))))))))).	chr17:48828644-48828911(+)$1	1	161	191	10.4766
((((((((.(((......)))..)))))))	chr12:66359832-66360090(+)$1	1	192	222	15.7178
.(((((...(((......)))....)))))	chr6:41704360-41704596(-)$1	1	0	30	12.1700
(((.(((.(.((......)).).)))...)	chr5:137088363-137088622(-)$1	1	53	83	12.2561
((((((((((.(((....))...).)))))	chr2:26616154-26616405(+)$1	1	185	215	12.2554
((.((((.((((......)))).)))).))	chr19:811529-811749(+)$1	1	180	210	11.2386
..((((((((((......))))))))))..	chr10:90974238-90974498(-)$1	1	13	43	16.7365
((....(((((((.....)))))))....)	chr12:124082139-124082381(+)$1	1	121	151	11.5654
(.((((((((((....)))))))))).))(	chr2:85770076-85770326(+)$1	1	121	151	12.7835
(((((((((((((((...))))))))))))	chr20:43955066-43955321(-)$1	1	36	66	15.1923
((.(..((((((......))))))..).))	chr3:149089428-149089676(-)$1	1	110	140	10.9734
...(((((((((.....)))))))))....	chr20:34319686-34319943(-)$1	1	172	202	12.9843
((((((..((((......))))..)).)))	chr4:77968828-77969100(-)$1	1	146	176	11.1863
(((((((((((.((...)).))))))))))	chr20:4680562-4680830(+)$1	1	39	69	13.4883
(((((((..(((.....)))..))))))).	chr10:15254151-15254429(-)$1	1	137	167	11.2444
(((((.((((.(......).)))).)))))	chr16:2652997-2653270(+)$1	1	218	248	13.5178
((((((((((((........))))))))))	chr17:56168128-56168397(+)$1	1	67	97	11.7475
.(((((((...(......)...))))))).	chr7:94298460-94298710(+)$1	1	201	231	12.9553
.(((((((((((....))))))))))).))	chr3:30735328-30735571(+)$1	1	2	32	13.4462
(((((((...(((....)))...)))))))	chr20:2442197-2442448(-)$1	1	134	164	11.8138
(((((...((((......))))))))))))	chr1:235274365-235274610(-)$1	1	59	89	15.9177
.((((((((((((.....))))))))))))	chr10:35858103-35858385(+)$1	1	49	79	14.6661
(((((((((((.........))))))))))	chr1:92145825-92146133(-)$1	1	213	243	13.4622
(..(((...(((......)))...)))..)	chr14:24114009-24114245(+)$1	1	129	159	14.3545
(.((.((((((((((...)))))))))).)	chr16:46964539-46964777(+)$1	1	191	221	13.5736
(((((((..((((.....))))..))))))	chr6:7287987-7288260(-)$1	1	64	94	12.0996
(((((((.((((......))))...)))).	chr2:29170499-29170749(+)$1	1	60	90	12.4277
.(((((((...((((...))))))))))).	chr2:231743677-231743951(+)$1	1	145	175	11.1626
((((((((....(((...)))...))))))	chr14:101201193-101201463(+)$1	1	119	149	13.7715
((((....((((......))))....))))	chr2:20192623-20192913(-)$1	1	88	118	12.5771
.(((((...(((......))).)))))).)	chr17:27076927-27077169(+)$1	1	89	119	12.9148
(((....(((((......)))))...))).	chr3:195777933-195778187(-)$1	1	92	122	12.5130
((((((((((((......))))))))))))	chr7:45932745-45932962(+)$1	1	20	50	17.5399
(.(((((..(((......)))..))))).)	chr14:23495061-23495278(-)$1	1	16	46	12.4664
((....(((((((.....)))))))...))	chr12:66357275-66357530(+)$1	1	99	129	11.3347
.(((((((.((((.....)))).)))))))	chr19:11244257-11244566(+)$1	1	134	164	11.0860
((.((.(((((((((...))))))))).))	chr17:79477321-79477580(-)$1	1	124	154	11.9270
(((.(((..(((......)))..)))))))	chr6:119500824-119501066(-)$1	1	158	188	12.7227
(.((((((((((....)))))))))).)))	chr22:38202640-38202844(+)$1	1	148	178	12.8494
((...(..((((......))))..)..)))	chr8:22279566-22279779(+)$1	1	32	62	13.0284
(((((((((..(((....))).))))))).	chr2:71213224-71213439(-)$1	1	30	60	10.6177
(((....(((((......)))))...))))	chr3:133307565-133307854(+)$1	1	186	216	13.0503
..(((...((((......))))...)))..	chr16:19132599-19132827(+)$1	1	154	184	13.7153
((((((((((.(......).))))))))))	chr1:115292454-115292723(-)$1	1	107	137	17.0927
((((.(((..((......))..))).))))	chr17:25635598-25635895(+)$1	1	69	99	11.0202
.(((((((((((......))))))))))).	chr7:94298332-94298569(+)$1	1	173	203	15.5606
.((((...((((......)))).)))))))	chr17:66528664-66528933(+)$1	1	230	260	11.7797

#PSSM
= : 0.16	g : 0.14	d : 0.12	: : 0.10	[ : 0.07	c : 0.07	e : 0.05	i : 0.05	" : 0.03	b : 0.03	! : 0.03	f : 0.03	h : 0.01	# : 0.01	a : 0.01	
= : 0.25	g : 0.20	d : 0.12	[ : 0.09	e : 0.07	c : 0.07	i : 0.05	! : 0.03	h : 0.01	b : 0.01	" : 0.01	# : 0.01	f : 0.01	
= : 0.30	g : 0.20	e : 0.09	d : 0.09	b : 0.05	i : 0.05	[ : 0.05	# : 0.05	c : 0.03	h : 0.01	! : 0.01	" : 0.01	
= : 0.32	g : 0.16	d : 0.09	e : 0.07	# : 0.07	c : 0.05	b : 0.05	[ : 0.05	i : 0.05	! : 0.01	a : 0.01	" : 0.01	
= : 0.32	g : 0.16	c : 0.09	# : 0.09	[ : 0.05	i : 0.05	e : 0.05	d : 0.05	! : 0.03	b : 0.03	a : 0.01	" : 0.01	
= : 0.32	g : 0.18	c : 0.09	# : 0.09	i : 0.05	[ : 0.05	e : 0.05	" : 0.05	d : 0.03	! : 0.01	b : 0.01	a : 0.01	
= : 0.32	g : 0.23	" : 0.10	i : 0.07	! : 0.05	c : 0.05	d : 0.05	# : 0.05	f : 0.01	e : 0.01	
= : 0.32	! : 0.14	g : 0.14	" : 0.14	i : 0.07	[ : 0.05	e : 0.03	f : 0.01	d : 0.01	# : 0.01	c : 0.01	
= : 0.30	d : 0.18	" : 0.12	! : 0.10	g : 0.09	i : 0.05	[ : 0.03	e : 0.03	a : 0.01	f : 0.01	# : 0.01	
= : 0.30	d : 0.23	c : 0.12	g : 0.07	" : 0.07	i : 0.05	e : 0.03	! : 0.03	[ : 0.01	f : 0.01	# : 0.01	
= : 0.27	d : 0.21	c : 0.14	g : 0.07	i : 0.05	b : 0.05	[ : 0.05	" : 0.03	e : 0.03	f : 0.01	# : 0.01	! : 0.01	
d : 0.23	= : 0.21	c : 0.16	g : 0.07	a : 0.07	i : 0.05	b : 0.05	[ : 0.03	e : 0.03	f : 0.01	r : 0.01	# : 0.01	
o : 0.49	n : 0.09	d : 0.07	g : 0.05	m : 0.05	= : 0.05	c : 0.05	i : 0.03	b : 0.03	a : 0.01	q : 0.01	r : 0.01	
o : 0.50	n : 0.21	m : 0.07	i : 0.03	b : 0.03	= : 0.03	c : 0.03	q : 0.01	r : 0.01	d : 0.01	
o : 0.50	n : 0.21	m : 0.10	l : 0.03	= : 0.03	q : 0.01	r : 0.01	d : 0.01	c : 0.01	i : 0.01	
o : 0.50	n : 0.21	l : 0.12	m : 0.10	q : 0.01	r : 0.01	
o : 0.50	n : 0.21	l : 0.12	m : 0.05	= : 0.05	q : 0.01	r : 0.01	
o : 0.50	n : 0.12	l : 0.09	= : 0.07	i : 0.03	b : 0.03	m : 0.03	c : 0.03	g : 0.01	q : 0.01	r : 0.01	
d : 0.21	= : 0.20	c : 0.18	b : 0.09	a : 0.07	g : 0.07	i : 0.05	e : 0.03	o : 0.01	f : 0.01	q : 0.01	r : 0.01	
d : 0.23	= : 0.20	c : 0.18	] : 0.07	g : 0.07	i : 0.05	b : 0.05	3 : 0.03	e : 0.03	f : 0.01	q : 0.01	r : 0.01	
= : 0.29	d : 0.25	c : 0.14	g : 0.07	3 : 0.07	i : 0.05	2 : 0.03	e : 0.03	] : 0.01	f : 0.01	
= : 0.29	d : 0.25	3 : 0.10	2 : 0.09	g : 0.07	i : 0.05	] : 0.03	e : 0.03	4 : 0.01	a : 0.01	f : 0.01	
= : 0.30	g : 0.16	2 : 0.12	3 : 0.10	] : 0.07	i : 0.05	e : 0.05	d : 0.03	4 : 0.03	f : 0.01	c : 0.01	
= : 0.30	g : 0.21	3 : 0.10	2 : 0.07	i : 0.07	c : 0.05	d : 0.05	4 : 0.03	e : 0.03	a : 0.01	f : 0.01	
= : 0.32	g : 0.21	c : 0.09	i : 0.07	3 : 0.07	e : 0.05	4 : 0.03	] : 0.03	d : 0.03	2 : 0.01	b : 0.01	a : 0.01	
= : 0.34	g : 0.16	c : 0.09	i : 0.09	e : 0.07	d : 0.05	3 : 0.05	] : 0.03	4 : 0.03	2 : 0.03	b : 0.01	
= : 0.30	g : 0.18	e : 0.09	d : 0.09	c : 0.07	] : 0.07	i : 0.05	a : 0.03	3 : 0.03	4 : 0.03	2 : 0.01	
= : 0.29	g : 0.18	] : 0.10	d : 0.09	e : 0.07	c : 0.05	b : 0.03	i : 0.03	3 : 0.03	4 : 0.03	2 : 0.01	a : 0.01	f : 0.01	
= : 0.23	g : 0.18	d : 0.10	b : 0.09	e : 0.05	2 : 0.05	c : 0.05	] : 0.05	i : 0.03	4 : 0.03	f : 0.03	h : 0.01	B : 0.01	3 : 0.01	
= : 0.21	d : 0.12	] : 0.10	g : 0.10	b : 0.07	i : 0.07	c : 0.05	: : 0.05	e : 0.03	2 : 0.03	f : 0.03	h : 0.01	B : 0.01	4 : 0.01	a : 0.01	

#score	714.0676435629875
#seq	55
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_CDS_m3_run2.txt

#BEAR
gggggg[a[ccc[ammmma]ccc]a]ggggg	chr19:34856173-34856436(+)$1	263	195	226	11.9533
""bb$$$$$eeeeemmmmeeeee4444bb33	chr8:121587188-121587445(-)$1	257	101	132	13.3003
[dddd"""eeeeennnnneeeee333dddd]	chr1:206776161-206776419(-)$1	258	201	232	10.7509
:eeeee"""eeeeennnnneeeee22eeeee	chr16:46722871-46723158(-)$1	287	179	210	9.2371
eeee[bb[bb[cccmmmmccc]bb]bb]eee	chr5:1075466-1075734(-)$1	268	157	188	10.7178
eggggggg"""cccmmmmccc22gggggggC	chr19:5977919-5978177(-)$1	258	210	241	10.6475
e[gggggggeeeeemmmmeeeee333ggggg	chr20:40084289-40084589(-)$1	300	129	160	14.1202
c[ccc"""ffffffmmmmffffff]cccccc	chr11:2975611-2975859(-)$1	248	137	168	12.0676
eeeee[ccceeeeemmmmeeeee]ccc]eee	chr16:28124063-28124327(-)$1	264	178	209	13.0923
eeeee"""eeeeennnnneeeee4444eeee	chr11:72553524-72553794(-)$1	270	146	177	11.2832
[bba[ccc[eeeeemmmmeeeee]ccc]a]b	chr22:41936547-41936841(-)$1	294	14	45	12.6333
fff!!ffffffcccmmmmccc4444ffffff	chr20:34220104-34220361(-)$1	257	158	189	10.6414
!eeeeea!!eeeeemmmmeeeee22a4444e	chr19:58904751-58904998(+)$1	247	90	121	14.1143
[ccc$$$$$eeeeemmmmeeeee666666cc	chr14:39645236-39645493(+)$1	257	46	77	11.7871
f[bb!!ccc[ddddmmmmdddd]cccbb]ff	chr6:64286761-64287021(+)$1	260	148	179	10.3421
:gggggggbb[cccmmmmccc]bb22ggggg	chr20:44599697-44599957(-)$1	260	97	128	10.6486
eeeee!!ccc[cccmmmmcccccc4444eee	chr20:257538-257795(-)$1	257	198	229	13.3376
==========acccmmmmccc]a4444====	chr19:617768-618012(-)$1	244	88	119	13.7050
[a[ggggggg[cccmmmmcccgggggggabb	chr3:48956294-48956575(+)$1	281	12	43	11.4117
""a[dddd[a[cccmmmmccc]a]dddd]a3	chr4:16192836-16193102(-)$1	266	62	93	11.0521
gggggffffffcccmmmmccc]ffffff]gg	chr16:88552331-88552594(+)$1	263	182	213	10.4028
ddddbb[ccc[cccmmmmcccccc]bb22dd	chr16:70698668-70698904(-)$1	236	198	229	10.5240
iiiii"""ffffffmmmmffffff333iiii	chr19:17313566-17313840(+)$1	274	169	200	12.8402
c:ccc####eeeeemmmmeeeee22ccc:::	chr6:31603721-31603960(+)$1	239	205	236	10.9158
ccc[ccca!!ddddmmmmdddd22a]ccc]c	chr19:4033471-4033722(+)$1	251	121	152	11.7761
dd!!ccc"""ddddmmmmdddd]ccc]dddd	chr1:182356118-182356389(-)$1	271	48	79	11.1153
cc[dddd!!eeeeemmmmeeeee]dddd]cc	chr5:883898-884165(-)$1	267	75	106	12.2998
:a[===========mmmm===========]a	chr1:19578253-19578513(+)$1	260	137	168	11.9200
hhhh!!a!!bbcccmmmmccc]bb22a22hh	chr11:129744546-129744800(-)$1	254	111	142	11.1597
:ccc"""gggggggmmmmggggggg333ccc	chr11:62365852-62366097(-)$1	245	124	155	12.3073
:eeeee"""eeeeellleeeee4444eeeee	chr9:130830733-130831003(+)$1	270	148	179	10.8920
cccdddd!!bbcccmmmmccc]bb22dddd9	chr5:151137947-151138253(-)$1	306	162	193	10.1955
bb[ccc"""eeeeellleeeeeccc]bbeee	chr11:17378419-17378692(+)$1	273	131	162	10.3813
""ccc"""eeeeennnnneeeee333ccc]d	chr2:85779918-85780181(-)$1	263	61	92	11.7814
ee:bb####eeeeemmmmeeeee333bb::e	chr2:242274524-242274779(+)$1	255	120	151	11.7500
b!!bb"""bbddddmmmmdddd333bb333b	chr17:73238794-73239017(-)$1	223	165	196	12.2034
[ccc$$$$$eeeeemmmmeeeee]ccc]fff	chr11:122931194-122931401(-)$1	207	19	50	13.1223
eebb[a[ddddcccmmmmccc]dddd]a]bb	chr3:15100709-15100995(-)$1	286	176	207	10.0430
5ggggggg:eeeeemmmmeeeeeccc[eeee	chr1:68151118-68151359(+)$1	241	187	218	10.2479
eeeeeee!!eeeeemmmmeeeee22eeeee:	chr3:128369242-128369514(-)$1	272	132	163	11.9865
eee[cccgggggggmmmmggggggg>>>>>>	chr17:74328184-74328452(-)$1	268	76	107	10.9362
d[ccciiiiiiiiimmmmiiiiiiiii]ccc	chr4:159791469-159791759(+)$1	290	188	219	11.7312
eeggggggg"""bbmmmmbb333ggggggg4	chr5:31495276-31495529(-)$1	253	191	222	9.9507
eeeee!!bbeeeeemmmmeeeee]bb22eee	chr16:57793494-57793767(-)$1	273	86	117	12.3988
e"""===========lll===========66	chr21:34931961-34932213(+)$1	252	122	153	9.5893
bbeeeeegggggggmmmmggggggg4444ee	chr17:4577666-4577918(-)$1	252	122	153	11.3261
eeeee!!ccc[cccmmmmccc22ccc22eee	chr7:140404627-140404902(+)$1	275	178	209	11.9717
ddd[bb[ddddcccmmmmccc4444dddd]b	chr9:26927971-26928233(-)$1	262	74	105	10.7180
e[ccc[bb[eeeeemmmmeeeee]bbccc]e	chr19:55604302-55604567(-)$1	265	71	102	12.6161
ffff####bb[cccmmmmccc]bb4444fff	chr9:127174525-127174758(-)$1	233	166	197	12.4039
c!!bb"""ffffffmmmmffffff333bb22	chr19:1356988-1357242(+)$1	254	78	109	11.7011
dddccc"""eeeeemmmmeeeee333ccc]d	chr11:47651992-47652243(-)$1	251	74	105	14.9364
!!ddddccca!!cccmmmmccc22a]ccc]d	chr19:3618718-3618974(-)$1	256	215	246	9.6307
ccc[ccc!!eeeeemmmmeeeee22ccc22c	chr15:82530515-82530776(-)$1	261	175	206	13.4823
eeeee!!gggggggmmmmggggggg]eeeee	chr2:26417300-26417620(-)$1	320	78	109	11.9825
!dddd[ccc[ddddmmmmddddccc333ddd	chr10:5963383-5963641(+)$1	258	78	109	11.4279
c[ccc####cccbbmmmmbb]ccc4444ccc	chr8:42186603-42186874(+)$1	271	39	70	12.4718
c[dddd[bbeeeeemmmmeeeee666666bb	chr1:40027869-40028119(-)$1	250	171	202	10.5416

#otherMatches

#Seq PSSM
GGGGGCAGCGGUGCCCGGGGACCCCAGUCCC	chr19:34856173-34856436(+)$1	263	195	226	11.9533
ACCCUCUUCUUGCCACCAGGUAGCCAUGGCC	chr8:121587188-121587445(-)$1	257	101	132	13.3003
CCCUUAAGCUUCCGGAGGGGGAGGGGAAGGU	chr1:206776161-206776419(-)$1	258	201	232	10.7509
CGCCCCGCACUCCAGCGAGUGGAGAAGGGGC	chr16:46722871-46723158(-)$1	287	179	210	9.2371
UGCCUGGCGCUGAUGUUCAUCUGCUCCUGGU	chr5:1075466-1075734(-)$1	268	157	188	10.7178
CGUCCGCUCCAGGCUAGCGCCGUGGCGGGCC	chr19:5977919-5978177(-)$1	258	210	241	10.6475
AAAGGGUCCACUUUUGCCAAGGUACAGGGCC	chr20:40084289-40084589(-)$1	300	129	160	14.1202
GUGCUUAUCUCUGUUGGUGCAGAGUGGCCCU	chr11:2975611-2975859(-)$1	248	137	168	12.0676
GGCCUUUGAUUUUGUACUCAGAGCUUACAGG	chr16:28124063-28124327(-)$1	264	178	209	13.0923
CAGUUGAAUUAAAAGAUGUUUAAAGAAAAUU	chr11:72553524-72553794(-)$1	270	146	177	11.2832
UUGUGUGUCUGUGUUUGUAUGCAUGCAGGUC	chr22:41936547-41936841(-)$1	294	14	45	12.6333
ACUUAACAUCAAUGAAUUCAUGAGGUGAUGU	chr20:34220104-34220361(-)$1	257	158	189	10.6414
CCGUGUGAACCAGGUGAGCCUGGGGCUUAUG	chr19:58904751-58904998(+)$1	247	90	121	14.1143
CCCAUCCAAGCCAGAUUGCUGGCCCUUUCUG	chr14:39645236-39645493(+)$1	257	46	77	11.7871
AGUAGCUUAAAUUGAUUGCAAUAUAAUAGUG	chr6:64286761-64287021(+)$1	260	148	179	10.3421
AGCCGUUCUCAGGUAUGGACCCGGCUGGACG	chr20:44599697-44599957(-)$1	260	97	128	10.6486
GCAGCCCCAUCGGUCUCUACCAUGUUCUGCU	chr20:257538-257795(-)$1	257	198	229	13.3376
CGCAGGGCCAGGAUGCUGGUCACUGGGUGGC	chr19:617768-618012(-)$1	244	88	119	13.7050
AGCGCGGGCUUGACCGGCGUCGGCCCGCCGC	chr3:48956294-48956575(+)$1	281	12	43	11.4117
CACCUGAUAAGGGGGCAGUCCGUCAUCAAGC	chr4:16192836-16193102(-)$1	266	62	93	11.0521
AUGCCCUCAGAGCUCAGUGGUGUCUGAGAGG	chr16:88552331-88552594(+)$1	263	182	213	10.4028
UGGGGGCGCAAGGCUUCAGCCUGCACUUUCC	chr16:70698668-70698904(-)$1	236	198	229	10.5240
UGGCAGGAGCAUGCACGUGUGUGUCAGUGUC	chr19:17313566-17313840(+)$1	274	169	200	12.8402
UAAGGCAUUGCUAGGACUCUGGCUUCCUAAC	chr6:31603721-31603960(+)$1	239	205	236	10.9158
CCGGGGAGGGCGGCCGGAGCCGGACAUCCGU	chr19:4033471-4033722(+)$1	251	121	152	11.7761
UUUCGGGACCCCUUCCGUAAGGACCCUAACA	chr1:182356118-182356389(-)$1	271	48	79	11.1153
CUCGGGACAGGAUCAACCGGUUCCUCCCAGG	chr5:883898-884165(-)$1	267	75	106	12.2998
GCUCCGUGGGCUGGCUACCCAGCCUGCGGUG	chr1:19578253-19578513(+)$1	260	137	168	11.9200
UGGUGUGUGAGGCCUCUGGGCACUGUCCGAC	chr11:129744546-129744800(-)$1	254	111	142	11.1597
GCAUAGCCUGCGUGCACUUACGUAGAAGAUG	chr11:62365852-62366097(-)$1	245	124	155	12.3073
ACUGGCGGGGAGGGAGCCCCUCGAGGGCCGG	chr9:130830733-130831003(+)$1	270	148	179	10.8920
GUCCCCGCCACGCAGACUUGCAGUCCCGGGU	chr5:151137947-151138253(-)$1	306	162	193	10.1955
GAGUGUCUCGGGGCAGUGCCCUACAGUUCCC	chr11:17378419-17378692(+)$1	273	131	162	10.3813
ACGUGAAGAUCACCUACCGUGAUGGCCGCAC	chr2:85779918-85780181(-)$1	263	61	92	11.7814
UUACUGUAAGUGUAAUUCUACAUGAAAGAUG	chr2:242274524-242274779(+)$1	255	120	151	11.7500
GCCGCUUUGCCCCGGACACGGGCCUGUUUUG	chr17:73238794-73239017(-)$1	223	165	196	12.2034
GACCAAAAGCUUCUAUCCAGAGGAGGUGUCU	chr11:122931194-122931401(-)$1	207	19	50	13.1223
GCGUCCUUCCUAUGGGAGCGUCAGGAUGAGC	chr3:15100709-15100995(-)$1	286	176	207	10.0430
CAGGGGAGGAAGCUAAAAAGUUUGCACAGGG	chr1:68151118-68151359(+)$1	241	187	218	10.2479
GUGAGUGUGGGCGACCCCUCGCCGCCGCUCC	chr3:128369242-128369514(-)$1	272	132	163	11.9865
GCAAGCUGCUAGCAUCCAUGCUGGCGAAAGC	chr17:74328184-74328452(-)$1	268	76	107	10.9362
AGugugucagucaaggucuuggcugacaaca	chr4:159791469-159791759(+)$1	290	188	219	11.7312
GUGAAUAGGCUAAAGUUAUUGAUUCUGUUCU	chr5:31495276-31495529(-)$1	253	191	222	9.9507
GUAGCCGCCCUGGAUCCAUCCGGAGGAAGCU	chr16:57793494-57793767(-)$1	273	86	117	12.3988
AAGUAGGAGGAAUAUUAUGUAUUUUUCCUUU	chr21:34931961-34932213(+)$1	252	122	153	9.5893
GGCCUGUGCCCUGGACCACUGGGGCUCAAAC	chr17:4577666-4577918(-)$1	252	122	153	11.3261
UCAUAAACAUUAGUUUUUACUUUGUGCCUAU	chr7:140404627-140404902(+)$1	275	178	209	11.9717
UGGAUCAGCAGACAAGACUGUUAAACUGUGG	chr9:26927971-26928233(-)$1	262	74	105	10.7180
UGGGGUGGUGCGGGAUGUCCUGCUUCCCUGA	chr19:55604302-55604567(-)$1	265	71	102	12.6161
UCUCAUAUCUUAGAUUUUUUUCAGCCAAGAG	chr9:127174525-127174758(-)$1	233	166	197	12.4039
UGUGCAAAUCCUCUCUCUAGAGGAAAAGUUA	chr19:1356988-1357242(+)$1	254	78	109	11.7011
UAGUGGACUUUGUGAUUCCAUAAUAACCAUC	chr11:47651992-47652243(-)$1	251	74	105	14.9364
AACUGGGGCCUCCCCUUCUGGGCCGAGCCAC	chr19:3618718-3618974(-)$1	256	215	246	9.6307
CAGUUGAUUGuuuuuagugaaacuuuuauuu	chr15:82530515-82530776(-)$1	261	175	206	13.4823
CAGGGCCAGGGAGCUCAUGUUCUCUUCCUUG	chr2:26417300-26417620(-)$1	320	78	109	11.9825
ACGCCAACGUGUUUGAUGAGGCCGUACGGGU	chr10:5963383-5963641(+)$1	258	78	109	11.4279
GAAGAACUGGUGGCUGAAGCACAUAACCUCU	chr8:42186603-42186874(+)$1	271	39	70	12.4718
UGCCAGCUAGGACACCAGUGUCCAUUGUUUA	chr1:40027869-40028119(-)$1	250	171	202	10.5416

#DB
((((((.(.(((.(....).))).).)))))	chr19:34856173-34856436(+)$1	1	195	226	11.9533
..((.....(((((....)))))....))..	chr8:121587188-121587445(-)$1	1	101	132	13.3003
.((((...(((((.....)))))...)))).	chr1:206776161-206776419(-)$1	1	201	232	10.7509
.(((((...(((((.....)))))..)))))	chr16:46722871-46723158(-)$1	1	179	210	9.2371
((((.((.((.(((....))).)).)).)))	chr5:1075466-1075734(-)$1	1	157	188	10.7178
)(((((((...(((....)))..))))))))	chr19:5977919-5978177(-)$1	1	210	241	10.6475
(.((((((((((((....)))))...)))))	chr20:40084289-40084589(-)$1	1	129	160	14.1202
(.(((...((((((....)))))).))))))	chr11:2975611-2975859(-)$1	1	137	168	12.0676
(((((.((((((((....))))).))).)))	chr16:28124063-28124327(-)$1	1	178	209	13.0923
(((((...(((((.....)))))....))))	chr11:72553524-72553794(-)$1	1	146	177	11.2832
.(((.(((.(((((....))))).))).).)	chr22:41936547-41936841(-)$1	1	14	45	12.6333
(((..(((((((((....)))....))))))	chr20:34220104-34220361(-)$1	1	158	189	10.6414
.((((((..(((((....)))))..)....)	chr19:58904751-58904998(+)$1	1	90	121	14.1143
.(((.....(((((....)))))......))	chr14:39645236-39645493(+)$1	1	46	77	11.7871
(.((..(((.((((....)))).))))).))	chr6:64286761-64287021(+)$1	1	148	179	10.3421
.(((((((((.(((....))).))..)))))	chr20:44599697-44599957(-)$1	1	97	128	10.6486
(((((..(((.(((....))))))....)))	chr20:257538-257795(-)$1	1	198	229	13.3376
((((((((((((((....))).)....))))	chr19:617768-618012(-)$1	1	88	119	13.7050
.(.(((((((.(((....)))))))))))))	chr3:48956294-48956575(+)$1	1	12	43	11.4117
..(.((((.(.(((....))).).)))).).	chr4:16192836-16193102(-)$1	1	62	93	11.0521
((((((((((((((....))).)))))).))	chr16:88552331-88552594(+)$1	1	182	213	10.4028
((((((.(((.(((....)))))).))..))	chr16:70698668-70698904(-)$1	1	198	229	10.5240
(((((...((((((....))))))...))))	chr19:17313566-17313840(+)$1	1	169	200	12.8402
).(((....(((((....)))))..)))...	chr6:31603721-31603960(+)$1	1	205	236	10.9158
(((.((((..((((....))))..).))).)	chr19:4033471-4033722(+)$1	1	121	152	11.7761
((..(((...((((....)))).))).))))	chr1:182356118-182356389(-)$1	1	48	79	11.1153
((.((((..(((((....))))).)))).))	chr5:883898-884165(-)$1	1	75	106	12.2998
.(.(((((((((((....))))))))))).)	chr1:19578253-19578513(+)$1	1	137	168	11.9200
((((..(..(((((....))).))..)..))	chr11:129744546-129744800(-)$1	1	111	142	11.1597
.(((...(((((((....)))))))...)))	chr11:62365852-62366097(-)$1	1	124	155	12.3073
.(((((...(((((...)))))....)))))	chr9:130830733-130831003(+)$1	1	148	179	10.8920
(((((((..(((((....))).))..)))).	chr5:151137947-151138253(-)$1	1	162	193	10.1955
((.(((...(((((...)))))))).)))))	chr11:17378419-17378692(+)$1	1	131	162	10.3813
..(((...(((((.....)))))...))).)	chr2:85779918-85780181(-)$1	1	61	92	11.7814
)).((....(((((....)))))...))..(	chr2:242274524-242274779(+)$1	1	120	151	11.7500
(..((...((((((....))))...))...)	chr17:73238794-73239017(-)$1	1	165	196	12.2034
.(((.....(((((....))))).))).)))	chr11:122931194-122931401(-)$1	1	19	50	13.1223
((((.(.(((((((....))).)))).).))	chr3:15100709-15100995(-)$1	1	176	207	10.0430
.))))))).(((((....)))))(((.((((	chr1:68151118-68151359(+)$1	1	187	218	10.2479
))(((((..(((((....)))))..))))).	chr3:128369242-128369514(-)$1	1	132	163	11.9865
(((.((((((((((....)))))))......	chr17:74328184-74328452(-)$1	1	76	107	10.9362
(.((((((((((((....))))))))).)))	chr4:159791469-159791759(+)$1	1	188	219	11.7312
(((((((((...((....))...))))))).	chr5:31495276-31495529(-)$1	1	191	222	9.9507
(((((..(((((((....))))).))..)))	chr16:57793494-57793767(-)$1	1	86	117	12.3988
(...(((((((((((...)))))))))))..	chr21:34931961-34932213(+)$1	1	122	153	9.5893
((((((((((((((....)))))))....))	chr17:4577666-4577918(-)$1	1	122	153	11.3261
(((((..(((.(((....)))..)))..)))	chr7:140404627-140404902(+)$1	1	178	209	11.9717
(((.((.(((((((....)))....)))).)	chr9:26927971-26928233(-)$1	1	74	105	10.7180
(.(((.((.(((((....))))).))))).)	chr19:55604302-55604567(-)$1	1	71	102	12.6161
((((....((.(((....))).))....)))	chr9:127174525-127174758(-)$1	1	166	197	12.4039
(..((...((((((....))))))...))..	chr19:1356988-1357242(+)$1	1	78	109	11.7011
((((((...(((((....)))))...))).)	chr11:47651992-47652243(-)$1	1	74	105	14.9364
..((((((((..(((....)))..).))).)	chr19:3618718-3618974(-)$1	1	215	246	9.6307
(((.(((..(((((....)))))..)))..)	chr15:82530515-82530776(-)$1	1	175	206	13.4823
(((((..(((((((....))))))).)))))	chr2:26417300-26417620(-)$1	1	78	109	11.9825
.((((.(((.((((....)))))))...)))	chr10:5963383-5963641(+)$1	1	78	109	11.4279
(.(((....(((((....)).)))....)))	chr8:42186603-42186874(+)$1	1	39	70	12.4718
(.((((.(((((((....)))))......))	chr1:40027869-40028119(-)$1	1	171	202	10.5416

#PSSM
e : 0.27	c : 0.15	[ : 0.08	: : 0.08	d : 0.08	" : 0.05	f : 0.05	! : 0.05	b : 0.05	g : 0.03	= : 0.01	i : 0.01	h : 0.01	5 : 0.01	
e : 0.25	[ : 0.12	c : 0.12	d : 0.10	g : 0.08	" : 0.06	b : 0.05	! : 0.05	f : 0.03	a : 0.03	= : 0.01	i : 0.01	: : 0.01	h : 0.01	
e : 0.22	c : 0.20	g : 0.12	d : 0.12	b : 0.06	[ : 0.06	! : 0.05	f : 0.03	= : 0.01	a : 0.01	i : 0.01	h : 0.01	: : 0.01	" : 0.01	
e : 0.20	c : 0.18	g : 0.13	d : 0.12	b : 0.10	[ : 0.08	! : 0.03	= : 0.03	a : 0.01	i : 0.01	h : 0.01	" : 0.01	f : 0.01	
c : 0.20	e : 0.18	g : 0.13	d : 0.12	b : 0.08	$ : 0.05	[ : 0.05	! : 0.05	= : 0.05	i : 0.01	" : 0.01	# : 0.01	
" : 0.13	g : 0.12	c : 0.12	! : 0.10	e : 0.08	d : 0.08	# : 0.06	$ : 0.05	b : 0.05	[ : 0.05	= : 0.05	f : 0.03	a : 0.01	i : 0.01	
" : 0.20	c : 0.15	g : 0.10	[ : 0.08	! : 0.06	# : 0.06	$ : 0.05	= : 0.05	d : 0.05	b : 0.03	f : 0.03	a : 0.03	e : 0.03	i : 0.01	
" : 0.20	g : 0.17	c : 0.13	! : 0.10	# : 0.06	$ : 0.05	= : 0.05	d : 0.05	b : 0.05	a : 0.03	f : 0.03	[ : 0.01	i : 0.01	
g : 0.12	c : 0.12	! : 0.12	" : 0.10	b : 0.10	f : 0.08	[ : 0.06	$ : 0.05	e : 0.05	= : 0.05	# : 0.05	d : 0.03	: : 0.01	i : 0.01	
e : 0.39	b : 0.10	c : 0.08	f : 0.08	g : 0.08	" : 0.05	= : 0.05	[ : 0.03	a : 0.03	d : 0.03	! : 0.01	i : 0.01	
e : 0.39	[ : 0.13	d : 0.12	f : 0.08	g : 0.06	c : 0.03	" : 0.03	= : 0.03	b : 0.03	a : 0.01	i : 0.01	! : 0.01	
e : 0.39	c : 0.31	d : 0.08	g : 0.06	f : 0.05	= : 0.03	i : 0.01	" : 0.01	! : 0.01	
e : 0.39	c : 0.29	d : 0.08	g : 0.06	f : 0.05	= : 0.03	b : 0.03	[ : 0.01	i : 0.01	
e : 0.34	c : 0.29	d : 0.08	g : 0.06	n : 0.05	f : 0.05	= : 0.03	b : 0.03	a : 0.01	i : 0.01	
m : 0.86	n : 0.06	l : 0.03	= : 0.01	c : 0.01	
m : 0.87	n : 0.06	l : 0.05	
m : 0.87	n : 0.06	l : 0.05	
m : 0.87	n : 0.06	e : 0.03	l : 0.01	
e : 0.37	c : 0.27	d : 0.08	g : 0.06	f : 0.05	= : 0.03	b : 0.03	a : 0.01	n : 0.01	i : 0.01	m : 0.01	
e : 0.39	c : 0.29	d : 0.08	g : 0.06	f : 0.05	= : 0.03	b : 0.03	] : 0.01	i : 0.01	
e : 0.39	c : 0.31	d : 0.08	g : 0.06	f : 0.05	= : 0.03	i : 0.01	3 : 0.01	] : 0.01	
e : 0.39	] : 0.15	c : 0.08	d : 0.08	g : 0.08	f : 0.05	2 : 0.03	4 : 0.03	= : 0.03	i : 0.01	3 : 0.01	
e : 0.36	c : 0.10	b : 0.08	g : 0.08	2 : 0.06	f : 0.06	4 : 0.05	] : 0.03	a : 0.03	= : 0.03	3 : 0.03	d : 0.01	i : 0.01	
c : 0.15	] : 0.13	g : 0.12	4 : 0.10	3 : 0.10	2 : 0.10	b : 0.08	f : 0.06	6 : 0.03	= : 0.03	e : 0.01	d : 0.01	i : 0.01	
4 : 0.15	c : 0.15	3 : 0.13	2 : 0.13	g : 0.12	a : 0.05	] : 0.05	d : 0.05	6 : 0.03	= : 0.03	b : 0.03	f : 0.01	i : 0.01	
c : 0.17	3 : 0.15	4 : 0.13	] : 0.08	b : 0.08	2 : 0.06	d : 0.06	g : 0.05	f : 0.03	6 : 0.03	= : 0.03	a : 0.01	e : 0.01	> : 0.01	i : 0.01	
c : 0.18	4 : 0.13	g : 0.10	b : 0.10	d : 0.08	e : 0.06	3 : 0.06	f : 0.03	6 : 0.03	] : 0.03	= : 0.03	2 : 0.03	a : 0.01	[ : 0.01	> : 0.01	i : 0.01	
c : 0.13	g : 0.10	d : 0.10	e : 0.10	b : 0.08	] : 0.08	4 : 0.08	2 : 0.06	= : 0.05	3 : 0.05	f : 0.03	6 : 0.03	i : 0.01	a : 0.01	> : 0.01	
e : 0.20	c : 0.15	g : 0.08	d : 0.08	] : 0.08	f : 0.05	= : 0.05	2 : 0.05	b : 0.03	a : 0.03	4 : 0.03	6 : 0.03	: : 0.03	i : 0.01	3 : 0.01	> : 0.01	
e : 0.22	] : 0.13	g : 0.10	c : 0.10	d : 0.08	f : 0.06	b : 0.05	3 : 0.03	: : 0.03	2 : 0.03	4 : 0.01	= : 0.01	a : 0.01	i : 0.01	h : 0.01	> : 0.01	6 : 0.01	
e : 0.25	c : 0.13	b : 0.10	d : 0.10	g : 0.06	f : 0.06	3 : 0.03	: : 0.03	] : 0.01	C : 0.01	= : 0.01	i : 0.01	a : 0.01	h : 0.01	9 : 0.01	> : 0.01	4 : 0.01	6 : 0.01	2 : 0.01	

#score	674.5264892521416
#seq	58
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_transcript_m3_run2.txt

#BEAR
ee[cccqqqqqqqqccc22e	chr3:48481604-48481822(+)$1	218	108	128	15.1786
[eeeeeqqqqqqqqeeeeec	chr11:64533291-64533537(-)$1	246	27	47	13.7648
[eeeeeqqqqqqqqeeeee]	chr19:55998126-55998412(+)$1	286	41	61	13.8518
ii!!bbqqqqqqqqbbiiii	chr19:47774860-47775178(+)$1	318	26	46	15.0821
dddd[aqqqqqqqqa]dddd	chr3:184052587-184052844(+)$1	257	173	193	13.1816
[eeeeeqqqqqqqqeeeee2	chr19:1106461-1106692(+)$1	231	44	64	13.6314
!!ddddqqqqqqqqdddd22	chr11:65421934-65422253(-)$1	319	195	215	13.6549
iiiiiiqqqqqqqqiiiiii	chr11:1773937-1774223(-)$1	286	49	69	14.7525
dd[cccqqqqqqqqccc22d	chr19:50354436-50354729(+)$1	293	95	115	14.9904
ffffffqqqqqqqqffffff	chr14:105936649-105936933(+)$1	284	143	163	13.9946
c!!cccqqqqqqqqccc444	chr6:32083287-32083617(-)$1	330	163	183	15.3603
hh[cccqqqqqqqqccc22h	chr6:31604756-31604981(+)$1	225	123	143	15.0135
ffffffqqqqqqqqffffff	chr19:18280187-18280524(+)$1	337	147	167	13.9946
!eeeeeqqqqqqqqeeeee4	chr16:3022750-3023024(-)$1	274	123	143	13.6845
dd!!bbqqqqqqqqbb22dd	chrX:47430802-47431096(+)$1	294	122	142	14.2541
!!ddddqqqqqqqqdddd22	chr11:65422118-65422416(-)$1	298	122	142	13.6549
ee!!bbqqqqqqqqbb22ee	chr1:24021052-24021274(+)$1	222	140	160	14.5454
ffffffqqqqqqqqffffff	chr6:33172037-33172287(+)$1	250	56	76	13.9946
####bbqqqqqqqqbb333d	chr10:82278510-82278820(+)$1	310	141	161	15.0217
ffffffqqqqqqqqffffff	chr2:131907198-131907463(+)$1	265	171	191	13.9946
ggggggqqqqqqqqgggggg	chr6:33377458-33377711(+)$1	253	156	176	14.9265
ee[cccqqqqqqqqccc22e	chr3:48481577-48481804(+)$1	227	135	155	15.1786
d[bbbbqqqqqqqqbb]bb]	chr3:126754374-126754642(+)$1	268	212	232	13.5039
ggggggqqqqqqqqgggggg	chr19:38741820-38742048(-)$1	228	127	147	14.9265
ggggggqqqqqqqqgggggg	chr3:128888924-128889159(-)$1	235	212	232	14.9265
b"""bbqqqqqqqqbb333b	chr8:145698778-145699031(+)$1	253	100	120	14.7625
b!!cccqqqqqqqqccc22b	chr17:74266734-74267001(+)$1	267	3	23	15.0759
:a[cccqqqqqqqqccc]a:	chr19:896580-896799(-)$1	219	108	128	13.4452
fff[bbqqqqqqqqbb]fff	chrX:152961323-152961547(+)$1	224	112	132	14.5114
iiiiiiqqqqqqqqiiiiii	chr5:126172492-126172764(+)$1	272	106	126	14.7525
bb[cccqqqqqqqqccc]bb	chr19:50363433-50363687(+)$1	254	129	149	14.4821
ggggggqqqqqqqqgggggg	chr22:38352679-38352955(+)$1	276	217	237	14.9265
aa[cccqqqqqqqqccc]a]	chr12:53689544-53689769(+)$1	225	5	25	15.4546
ffffffqqqqqqqqffffff	chr19:10406721-10406970(+)$1	249	12	32	13.9946
d[ddddqqqqqqqqdddddd	chr9:101611727-101611979(+)$1	252	98	118	13.1959
ffffffqqqqqqqqffffff	chr9:131133551-131133788(+)$1	237	211	231	13.9946
hh[cccqqqqqqqqccchhh	chr1:183522772-183523147(+)$1	375	196	216	14.5184
c[ddddqqqqqqqqdddd]c	chr11:60658370-60658662(-)$1	292	155	175	13.7065
[ccc[aqqqqqqqqacccgg	chr11:295156-295408(+)$1	252	17	37	14.7664
fffcccqqqqqqqqccc]ff	chr7:150840351-150840627(+)$1	276	178	198	15.0133
[eeeeeqqqqqqqqeeeeeg	chr8:145133559-145133826(+)$1	267	7	27	13.8214
"""cccqqqqqqqqccc333	chr1:50941031-50941294(-)$1	263	156	176	15.6976
bb[cccqqqqqqqqcccbb:	chr1:12034747-12034989(+)$1	242	63	83	13.2207
ggggggqqqqqqqqgggggg	chr20:36146180-36146428(-)$1	248	45	65	14.9265
a!!cccqqqqqqqqccc22a	chr19:1497438-1497848(+)$1	410	155	175	15.4658
[eeeeeqqqqqqqqeeeee]	chr5:167975994-167976220(-)$1	226	23	43	13.8518
ggg[bbqqqqqqqqbb22gg	chr6:31526032-31526341(+)$1	309	70	90	14.9382
gg[cccqqqqqqqqccc]gg	chr19:45853202-45853485(-)$1	283	202	222	15.6910
ggggggqqqqqqqqgggggg	chr1:12091677-12091952(+)$1	275	134	154	14.9265
"""cccqqqqqqqqccc333	chr12:53689231-53689461(+)$1	230	155	175	15.6976
[bb[bbqqqqqqqqbb]bb]	chr22:21354425-21354680(-)$1	255	231	251	13.8421
f[ddddqqqqqqqqdddd]f	chr11:4114134-4114385(+)$1	251	196	216	13.6450
c[a[bbqqqqqqqqbba]cc	chr20:57570169-57570393(-)$1	224	123	143	14.9378
ggggggqqqqqqqqgggggg	chr1:156005932-156006174(-)$1	242	1	21	14.9265
fff[bbqqqqqqqqbb]fff	chr16:89663353-89663615(+)$1	262	52	72	14.5114
c!!cccqqqqqqqqccc22c	chr19:35514053-35514302(+)$1	249	166	186	15.5421
)))cccqqqqqqqqccc22d	chr6:16266308-16266551(+)$1	243	165	185	13.6313
gggggaqqqqqqqqa]gggg	chr19:896535-896780(-)$1	245	202	222	14.8039
ggggggqqqqqqqqgggggg	chr22:43562841-43563151(-)$1	310	235	255	14.9265
eee[bbqqqqqqqqbb]eee	chr8:23429827-23430068(+)$1	241	25	45	14.3242
dd[cccqqqqqqqqccc]dd	chr19:2427311-2427603(-)$1	292	77	97	14.8718
d!!a[aqqqqqqqqa]a]dd	chr7:6695637-6695883(+)$1	246	70	90	14.3936
ddd[bbqqqqqqqqbb]ddd	chr9:139566917-139567168(+)$1	251	5	25	13.8626
hh!!bbqqqqqqqqbb]hhh	chr6:30593924-30594173(+)$1	249	61	81	14.2239
ffffffqqqqqqqqffffff	chr1:150192277-150192532(-)$1	255	80	100	13.9946
!eeeeeqqqqqqqqeeeee2	chr19:42751746-42752008(-)$1	262	199	219	13.6112
!!ddddqqqqqqqqdddd]d	chr19:42752054-42752357(-)$1	303	87	107	13.7211
ffffffqqqqqqqqffffff	chr16:56701780-56702037(-)$1	257	185	205	13.9946
ggggggqqqqqqqqgggggg	chr1:156006067-156006321(-)$1	254	148	168	14.9265
c[a[bbqqqqqqqqbba]cc	chr19:55918959-55919230(-)$1	271	144	164	14.9378
bb[cccqqqqqqqqccc]bb	chr20:44526948-44527230(+)$1	282	77	97	14.4821
"bb[bbqqqqqqqqbb]bb]	chr11:67379490-67379746(+)$1	256	27	47	13.7292
ccc[bbqqqqqqqqbb333c	chr9:130697423-130697717(-)$1	294	127	147	15.0831

#otherMatches

#Seq PSSM
GGCCGCGAAGGUAAGUGUUC	chr3:48481604-48481822(+)$1	218	108	128	15.1786
UGCCCCUGCCCCCCGGGGUC	chr11:64533291-64533537(-)$1	246	27	47	13.7648
GGGGGCAUGGGGGAGCCCCG	chr19:55998126-55998412(+)$1	286	41	61	13.8518
GGCUGGCGCCCUCUCCCCGG	chr19:47774860-47775178(+)$1	318	26	46	15.0821
CUGCAGGGGGGCGGCAGCAG	chr3:184052587-184052844(+)$1	257	173	193	13.1816
UAGCUGCCCUAACCCAGCUU	chr19:1106461-1106692(+)$1	231	44	64	13.6314
CCUGUGGCCCCCCACACAAC	chr11:65421934-65422253(-)$1	319	195	215	13.6549
CCUUGUUGGAGCCUGCAGGG	chr11:1773937-1774223(-)$1	286	49	69	14.7525
GCAGCCCCCCUUGUGGCCCG	chr19:50354436-50354729(+)$1	293	95	115	14.9904
AGGGGCCACCCCGUGCCCCU	chr14:105936649-105936933(+)$1	284	143	163	13.9946
GUUUCAAAUUUCCCUGAUCC	chr6:32083287-32083617(-)$1	330	163	183	15.3603
GACCUGGAUCAUCACGGACU	chr6:31604756-31604981(+)$1	225	123	143	15.0135
UGGGGGUCCUAACUCCCCCA	chr19:18280187-18280524(+)$1	337	147	167	13.9946
CGCCCUUGAAAGCUGGGGCC	chr16:3022750-3023024(-)$1	274	123	143	13.6845
CAAUGUUCGUCUCUGCCCUG	chrX:47430802-47431096(+)$1	294	122	142	14.2541
cccaggccccagccccuguc	chr11:65422118-65422416(-)$1	298	122	142	13.6549
GAAACUUUGGUUUUGGGAUC	chr1:24021052-24021274(+)$1	222	140	160	14.5454
GAGGGUUAGUUGGUAUUCUC	chr6:33172037-33172287(+)$1	250	56	76	13.9946
ACCAGCCCACAACAGCCUCU	chr10:82278510-82278820(+)$1	310	141	161	15.0217
ACAUUUGUAAGUGAAAAUGU	chr2:131907198-131907463(+)$1	265	171	191	13.9946
UCAAAUAAAGAAUAGUUUGG	chr6:33377458-33377711(+)$1	253	156	176	14.9265
GGCCGCGAAGGUAAGUGUUC	chr3:48481577-48481804(+)$1	227	135	155	15.1786
CAGGCCCAAGGAGAGGACUC	chr3:126754374-126754642(+)$1	268	212	232	13.5039
AGCUUGCUUGUGUAUAAGUU	chr19:38741820-38742048(-)$1	228	127	147	14.9265
GGAAGUGUCUAUGAACUUCC	chr3:128888924-128889159(-)$1	235	212	232	14.9265
CUUUGGAUCCAUUGCCCCUG	chr8:145698778-145699031(+)$1	253	100	120	14.7625
GGACAGUAAACUUCCUGGGC	chr17:74266734-74267001(+)$1	267	3	23	15.0759
UGUCACCCCAUCCCGUGUCC	chr19:896580-896799(-)$1	219	108	128	13.4452
GGAAGGAGCCCAAACCAUCC	chrX:152961323-152961547(+)$1	224	112	132	14.5114
GAGGGAGGGAAGGGUUUCUC	chr5:126172492-126172764(+)$1	272	106	126	14.7525
GGAGUCACAGAUGAGGCCCC	chr19:50363433-50363687(+)$1	254	129	149	14.4821
AUCGUCUGACAGGUGAUGAU	chr22:38352679-38352955(+)$1	276	217	237	14.9265
CCUGCCCCCUCCCCGGCCGC	chr12:53689544-53689769(+)$1	225	5	25	15.4546
GUCCUCAUUUUUUGGGGGAU	chr19:10406721-10406970(+)$1	249	12	32	13.9946
GCGGGGUUAAAGUUUUCCCA	chr9:101611727-101611979(+)$1	252	98	118	13.1959
GCCGUGGGGCCUGACACGGC	chr9:131133551-131133788(+)$1	237	211	231	13.9946
CAGCUGCAACAUUCCAGUGU	chr1:183522772-183523147(+)$1	375	196	216	14.5184
CUGGUCUGAGUGGUGGCCUG	chr11:60658370-60658662(-)$1	292	155	175	13.7065
ACGAAGGACGGGGACUCGGC	chr11:295156-295408(+)$1	252	17	37	14.7664
CGUGGUGGAAGAUGACCUGC	chr7:150840351-150840627(+)$1	276	178	198	15.0133
CGGGAGCUGUAGUUCUCCCG	chr8:145133559-145133826(+)$1	267	7	27	13.8214
GACGUAAGUUCCCAUACCUA	chr1:50941031-50941294(-)$1	263	156	176	15.6976
GCUCCCCACCACCAGGGGCA	chr1:12034747-12034989(+)$1	242	63	83	13.2207
UGUACAAAUACAUGUGUAUA	chr20:36146180-36146428(-)$1	248	45	65	14.9265
GUCACCUCCAGCCCGGUCUC	chr19:1497438-1497848(+)$1	410	155	175	15.4658
GAAUAUAACUAAUAGUAUUA	chr5:167975994-167976220(-)$1	226	23	43	13.8518
AGGAGCGGGGAGGGGCAGCC	chr6:31526032-31526341(+)$1	309	70	90	14.9382
AGCCuccuguuucugagccu	chr19:45853202-45853485(-)$1	283	202	222	15.6910
ACCUGGUCAGUGCCCCAGGU	chr1:12091677-12091952(+)$1	275	134	154	14.9265
GCCGCAGCUAGAAAUGCUCA	chr12:53689231-53689461(+)$1	230	155	175	15.6976
GCCUGCCCCCACCCGCCGGA	chr22:21354425-21354680(-)$1	255	231	251	13.8421
CUAGGCUGCAGACUGCCUUG	chr11:4114134-4114385(+)$1	251	196	216	13.6450
UGAUGAAUAAAGUAUCUGGC	chr20:57570169-57570393(-)$1	224	123	143	14.9378
CUCCCUGUCUGAAGAGGGAG	chr1:156005932-156006174(-)$1	242	1	21	14.9265
CCACGCCCGAGAAAGCCUGG	chr16:89663353-89663615(+)$1	262	52	72	14.5114
CCUGGCACAGCCUGGCCCUG	chr19:35514053-35514302(+)$1	249	166	186	15.5421
uaagagcuguaacacucacu	chr6:16266308-16266551(+)$1	243	165	185	13.6313
CGCACCCCCUUGCUGCGUGU	chr19:896535-896780(-)$1	245	202	222	14.8039
CCUUCCAGUGCAUGGGAGGG	chr22:43562841-43563151(-)$1	310	235	255	14.9265
GUGUGCUUGUGCGUGUCUAC	chr8:23429827-23430068(+)$1	241	25	45	14.3242
GGGCGGCUUCGGCUCCGAUU	chr19:2427311-2427603(-)$1	292	77	97	14.8718
GGGGGCGGGUAGGAGGCACG	chr7:6695637-6695883(+)$1	246	70	90	14.3936
GGGAUCUUCUCUGUGAAUCC	chr9:139566917-139567168(+)$1	251	5	25	13.8626
CAAAUCCAGGAAAUGAAUGU	chr6:30593924-30594173(+)$1	249	61	81	14.2239
GAAUAGUAAAGGUUCUAUUC	chr1:150192277-150192532(-)$1	255	80	100	13.9946
GCCUUAUUCUGUAUUGGGGA	chr19:42751746-42752008(-)$1	262	199	219	13.6112
UCGCUUAGGAAGUAAAGCCU	chr19:42752054-42752357(-)$1	303	87	107	13.7211
UUGGGAUGCCAAAUUCCCAG	chr16:56701780-56702037(-)$1	257	185	205	13.9946
CUCCCUGUCUGAAGAGGGAG	chr1:156006067-156006321(-)$1	254	148	168	14.9265
GGGAGCGGAGCGGGGCCGCC	chr19:55918959-55919230(-)$1	271	144	164	14.9378
CACCGACAAGCCCCUCGCUG	chr20:44526948-44527230(+)$1	282	77	97	14.4821
UGCAGCCCUCAAGCGCCGCC	chr11:67379490-67379746(+)$1	256	27	47	13.7292
GCUUUCCUUACCCUGACACA	chr9:130697423-130697717(-)$1	294	127	147	15.0831

#DB
((.(((........)))..)	chr3:48481604-48481822(+)$1	1	108	128	15.1786
.(((((........))))))	chr11:64533291-64533537(-)$1	1	27	47	13.7648
.(((((........))))).	chr19:55998126-55998412(+)$1	1	41	61	13.8518
((..((........))))))	chr19:47774860-47775178(+)$1	1	26	46	15.0821
((((.(........).))))	chr3:184052587-184052844(+)$1	1	173	193	13.1816
.(((((........))))).	chr19:1106461-1106692(+)$1	1	44	64	13.6314
..((((........))))..	chr11:65421934-65422253(-)$1	1	195	215	13.6549
((((((........))))))	chr11:1773937-1774223(-)$1	1	49	69	14.7525
((.(((........)))..)	chr19:50354436-50354729(+)$1	1	95	115	14.9904
((((((........))))))	chr14:105936649-105936933(+)$1	1	143	163	13.9946
(..(((........)))...	chr6:32083287-32083617(-)$1	1	163	183	15.3603
((.(((........)))..)	chr6:31604756-31604981(+)$1	1	123	143	15.0135
((((((........))))))	chr19:18280187-18280524(+)$1	1	147	167	13.9946
.(((((........))))).	chr16:3022750-3023024(-)$1	1	123	143	13.6845
((..((........))..))	chrX:47430802-47431096(+)$1	1	122	142	14.2541
..((((........))))..	chr11:65422118-65422416(-)$1	1	122	142	13.6549
((..((........))..))	chr1:24021052-24021274(+)$1	1	140	160	14.5454
((((((........))))))	chr6:33172037-33172287(+)$1	1	56	76	13.9946
....((........))...)	chr10:82278510-82278820(+)$1	1	141	161	15.0217
((((((........))))))	chr2:131907198-131907463(+)$1	1	171	191	13.9946
((((((........))))))	chr6:33377458-33377711(+)$1	1	156	176	14.9265
((.(((........)))..)	chr3:48481577-48481804(+)$1	1	135	155	15.1786
(.((((........)).)).	chr3:126754374-126754642(+)$1	1	212	232	13.5039
((((((........))))))	chr19:38741820-38742048(-)$1	1	127	147	14.9265
((((((........))))))	chr3:128888924-128889159(-)$1	1	212	232	14.9265
(...((........))...)	chr8:145698778-145699031(+)$1	1	100	120	14.7625
(..(((........)))..)	chr17:74266734-74267001(+)$1	1	3	23	15.0759
.(.(((........))).).	chr19:896580-896799(-)$1	1	108	128	13.4452
(((.((........)).)))	chrX:152961323-152961547(+)$1	1	112	132	14.5114
((((((........))))))	chr5:126172492-126172764(+)$1	1	106	126	14.7525
((.(((........))).))	chr19:50363433-50363687(+)$1	1	129	149	14.4821
((((((........))))))	chr22:38352679-38352955(+)$1	1	217	237	14.9265
((.(((........))).).	chr12:53689544-53689769(+)$1	1	5	25	15.4546
((((((........))))))	chr19:10406721-10406970(+)$1	1	12	32	13.9946
(.((((........))))))	chr9:101611727-101611979(+)$1	1	98	118	13.1959
((((((........))))))	chr9:131133551-131133788(+)$1	1	211	231	13.9946
((.(((........))))))	chr1:183522772-183523147(+)$1	1	196	216	14.5184
(.((((........)))).)	chr11:60658370-60658662(-)$1	1	155	175	13.7065
.(((.(........))))))	chr11:295156-295408(+)$1	1	17	37	14.7664
((((((........))).))	chr7:150840351-150840627(+)$1	1	178	198	15.0133
.(((((........))))))	chr8:145133559-145133826(+)$1	1	7	27	13.8214
...(((........)))...	chr1:50941031-50941294(-)$1	1	156	176	15.6976
((.(((........))))).	chr1:12034747-12034989(+)$1	1	63	83	13.2207
((((((........))))))	chr20:36146180-36146428(-)$1	1	45	65	14.9265
(..(((........)))..)	chr19:1497438-1497848(+)$1	1	155	175	15.4658
.(((((........))))).	chr5:167975994-167976220(-)$1	1	23	43	13.8518
(((.((........))..))	chr6:31526032-31526341(+)$1	1	70	90	14.9382
((.(((........))).))	chr19:45853202-45853485(-)$1	1	202	222	15.6910
((((((........))))))	chr1:12091677-12091952(+)$1	1	134	154	14.9265
...(((........)))...	chr12:53689231-53689461(+)$1	1	155	175	15.6976
.((.((........)).)).	chr22:21354425-21354680(-)$1	1	231	251	13.8421
(.((((........)))).)	chr11:4114134-4114385(+)$1	1	196	216	13.6450
(.(.((........))).))	chr20:57570169-57570393(-)$1	1	123	143	14.9378
((((((........))))))	chr1:156005932-156006174(-)$1	1	1	21	14.9265
(((.((........)).)))	chr16:89663353-89663615(+)$1	1	52	72	14.5114
(..(((........)))..)	chr19:35514053-35514302(+)$1	1	166	186	15.5421
...(((........)))..)	chr6:16266308-16266551(+)$1	1	165	185	13.6313
((((((........).))))	chr19:896535-896780(-)$1	1	202	222	14.8039
((((((........))))))	chr22:43562841-43563151(-)$1	1	235	255	14.9265
(((.((........)).)))	chr8:23429827-23430068(+)$1	1	25	45	14.3242
((.(((........))).))	chr19:2427311-2427603(-)$1	1	77	97	14.8718
(..(.(........).).))	chr7:6695637-6695883(+)$1	1	70	90	14.3936
(((.((........)).)))	chr9:139566917-139567168(+)$1	1	5	25	13.8626
((..((........)).)))	chr6:30593924-30594173(+)$1	1	61	81	14.2239
((((((........))))))	chr1:150192277-150192532(-)$1	1	80	100	13.9946
.(((((........))))).	chr19:42751746-42752008(-)$1	1	199	219	13.6112
..((((........)))).)	chr19:42752054-42752357(-)$1	1	87	107	13.7211
((((((........))))))	chr16:56701780-56702037(-)$1	1	185	205	13.9946
((((((........))))))	chr1:156006067-156006321(-)$1	1	148	168	14.9265
(.(.((........))).))	chr19:55918959-55919230(-)$1	1	144	164	14.9378
((.(((........))).))	chr20:44526948-44527230(+)$1	1	77	97	14.4821
.((.((........)).)).	chr11:67379490-67379746(+)$1	1	27	47	13.7292
(((.((........))...)	chr9:130697423-130697717(-)$1	1	127	147	15.0831

#PSSM
f : 0.16	g : 0.16	d : 0.10	[ : 0.09	c : 0.08	! : 0.06	b : 0.06	e : 0.05	i : 0.04	h : 0.04	" : 0.04	a : 0.02	# : 0.01	: : 0.01	) : 0.01	
g : 0.16	e : 0.15	f : 0.15	! : 0.10	[ : 0.08	d : 0.06	b : 0.06	i : 0.04	h : 0.04	" : 0.04	a : 0.02	c : 0.02	# : 0.01	) : 0.01	
[ : 0.16	f : 0.15	g : 0.15	! : 0.12	e : 0.10	d : 0.10	b : 0.04	" : 0.04	i : 0.02	c : 0.02	a : 0.02	# : 0.01	) : 0.01	
c : 0.28	g : 0.13	[ : 0.13	f : 0.10	e : 0.09	d : 0.09	! : 0.05	i : 0.02	# : 0.01	b : 0.01	" : 0.01	a : 0.01	
c : 0.27	b : 0.23	g : 0.13	f : 0.10	e : 0.09	d : 0.08	[ : 0.04	i : 0.02	
c : 0.27	b : 0.23	g : 0.12	f : 0.10	e : 0.09	d : 0.08	a : 0.05	i : 0.02	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.27	b : 0.23	g : 0.12	f : 0.10	e : 0.09	d : 0.08	a : 0.05	i : 0.02	
c : 0.28	b : 0.23	g : 0.12	f : 0.10	e : 0.09	d : 0.08	] : 0.04	i : 0.02	
c : 0.28	g : 0.13	f : 0.10	] : 0.10	e : 0.09	d : 0.09	i : 0.04	2 : 0.04	3 : 0.04	a : 0.04	
2 : 0.15	f : 0.13	g : 0.13	] : 0.13	e : 0.10	d : 0.10	3 : 0.06	b : 0.05	i : 0.04	h : 0.02	4 : 0.01	c : 0.01	
g : 0.17	f : 0.15	2 : 0.13	e : 0.12	d : 0.08	b : 0.08	3 : 0.06	i : 0.04	] : 0.04	a : 0.02	h : 0.02	c : 0.02	4 : 0.01	
g : 0.19	f : 0.16	d : 0.13	c : 0.08	] : 0.08	e : 0.05	2 : 0.05	b : 0.05	i : 0.04	h : 0.04	4 : 0.02	: : 0.02	3 : 0.02	a : 0.01	

#score	1054.82687290304
#seq	73
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_CDS_m1_run1.txt

#BEAR
c[eeeee[bb!!bboooooobb22bb]eeeee]c	chr17:80041756-80041962(-)$1	206	2	36	14.6345
cc!!a$$$$$ddddoooooodddda22ccc22cc	chr12:53298416-53298676(-)$1	260	90	124	12.9016
hh[ccca[ccc!!cccmmmmccc333ccc22a]c	chrX:153627828-153628035(+)$1	207	85	119	11.3254
iiiiiiii22acccooooooccc::a[iiiiiii	chrX:153596124-153596369(-)$1	245	166	200	11.8357
gggggg[cccddddmmmmdddd4444ccc]gggg	chr8:11710073-11710304(-)$1	231	193	227	10.5225
a!!eeeee$$$$$ccclllccc4444eeeee22a	chr6:30691959-30692176(+)$1	217	97	131	10.6499
gggggg"""bb[bb[ammmmabb]bb4444gggg	chr9:35717634-35717881(-)$1	247	35	69	10.7565
"""bb"""cccoooooocccbb333dddd]ffff	chr22:41739318-41739601(+)$1	283	179	213	10.5863
bbdddd[bbcccbboooooobb]ccc]bb]dddd	chr17:80041847-80042070(-)$1	223	116	150	12.9420
ffffff[ccc!!bboooooobb22ccc]ffffff	chr7:127343118-127343357(+)$1	239	120	154	14.7649
[ffffff!!ddddoooooodddd4444ffffff]	chr16:30080754-30080997(+)$1	243	202	236	12.7437
Eccc[cccccccccooooooccc]ccc]ccc22c	chr2:96949173-96949525(-)$1	352	21	55	13.8510
bb[ffffffa[cccooooooccc]a]ffffff]b	chr17:73832857-73833100(-)$1	243	41	75	13.8215
[a[==========ccclllccc4444========	chr19:6389521-6389749(-)$1	228	52	86	13.1158
ggggeeeee####ccclllccc4444eeeee]gg	chr16:30078726-30078964(+)$1	238	163	197	11.4403
[bb!!ccc####bboooooobb4444ccc22bb2	chr12:124827497-124827741(-)$1	244	10	44	15.3666
dddd[a"""eeeeeooooooeeeee]addddacc	chr7:75615657-75615918(+)$1	261	132	166	12.9476
hhh[ccc[ffffffooooooffffffccchhhhh	chr1:1747126-1747370(-)$1	244	150	184	11.8388
====!!a[cccrrrrrrrrrccc]a4444=====	chr8:145008079-145008343(-)$1	264	195	229	12.0747
c!!ccc[bbeeeeeooooooeeeee333bb]ccc	chr1:22175330-22175556(-)$1	226	83	117	13.4902
b[dddd[bb"""bboooooobb333bb]dddd]b	chr5:132101000-132101282(-)$1	282	36	70	14.5712
:cccdddd####bboooooobb22dddd333ccc	chr15:91424450-91424675(+)$1	225	135	169	13.8214
eeee"""a####bboooooobb4444a22eeeee	chr19:58905948-58906182(+)$1	234	119	153	15.8337
dddd"""ccc!!bboooooobb22cccdddd22d	chr3:53263235-53263494(-)$1	259	56	90	14.1733
ggggggg!!bb[bboooooobb]bb]gggggggD	chr1:44455987-44456235(+)$1	248	6	40	13.9845
=======[ccccccnnnnnccc]ccc========	chr16:16208750-16209033(+)$1	283	162	196	11.9543
e"""ffffff"""aooooooa22ffffff]eeee	chr16:30080528-30080742(+)$1	214	52	86	12.8512
rrreeeeebb[cccooooooccc]bbggggggg$	chr16:89167573-89167848(+)$1	275	47	81	12.1187
""dddda!!eeeeeooooooeeeee22a]dddde	chr6:31616394-31616627(-)$1	233	176	210	12.5348
============[aooooooa]============	chr2:73478410-73478660(+)$1	250	173	207	15.7008
f!!ffffff!!cccooooooccc4444ffffff4	chr11:64875173-64875412(+)$1	239	147	181	15.0378
dd[eeeee[cccbboooooobb]ccceeeee]dd	chr10:71158339-71158600(+)$1	261	80	114	14.0358
ggggggg[ccc[bboooooobb4444cccggggg	chr19:39330697-39330945(-)$1	248	138	172	17.0284
hhhhhhh[a!!a[aooooooa]a22a]hhhhhhh	chr12:111180356-111180620(-)$1	264	151	185	12.6627
cc$$$$$bb[ddddoooooodddd]bb22ccc]f	chr2:96952325-96952605(-)$1	280	33	67	11.4973
d==========[bboooooobb]==========:	chr5:149825094-149825350(-)$1	256	195	229	15.4586
Fccc[bba[eeeeeooooooeeeee]a]bb]ccc	chr17:45727526-45727751(+)$1	225	19	53	12.2660
ffff[ccc####bboooooobb55555ccc]fff	chr19:38799767-38800026(-)$1	259	172	206	12.7162
[ccc[dddd[ddddooooooddddddddccc]cc	chr9:130211464-130211697(-)$1	233	21	55	12.3746
"dddd[a!!eeeeeooooooeeeee4444a]ddd	chr1:989058-989309(+)$1	251	78	112	13.4238
ccc[ccc[ffffffooooooffffff333ccc]c	chr16:2222169-2222413(+)$1	244	202	236	13.5978
beeeeeffffffbboooooobb]fffffffffff	chr19:42373000-42373208(+)$1	208	140	174	12.6936
bb[eeeee!!ddddoooooodddd22eeeee]bb	chr12:10875353-10875588(-)$1	235	51	85	12.5584
ccc!!ccc[eeeeeooooooeeeeeccc22ccc:	chr12:120637058-120637310(-)$1	252	0	34	12.5971
###ccc!!ccc!!cccmmmmccc22ccc22cccd	chr11:65413652-65413933(+)$1	281	51	85	10.6368
!!ccccccccc[bbnnnnnbbccc]ccc22ccc2	chr19:18649008-18649270(-)$1	262	111	145	10.6374
::eeeee[ccc[cccooooooccc]ccc]eeeee	chr19:2213747-2214037(+)$1	290	163	197	11.5165
bbeeeee!!eeeeeooooooeeeee22eeeee]b	chr1:109807444-109807686(+)$1	242	145	179	12.7108
dffffff[ccc[cccooooooccc]cccffffff	chr19:39924204-39924411(-)$1	207	93	127	12.8516
======="""bbqqqqqqqqbb4444========	chr1:19447603-19447886(-)$1	283	18	52	10.8934

#otherMatches

#Seq PSSM
GCGGGUGCGCCCCGGGGAGACGCUGCUCAUCCAC	chr17:80041756-80041962(-)$1	206	2	36	14.6345
GGGAGGCAUCACCGCAGUUACGGUCAACCAGAGC	chr12:53298416-53298676(-)$1	260	90	124	12.9016
UAUGAGCAGCUGUCCUCUGAAGGUAAGGCAGGAU	chrX:153627828-153628035(+)$1	207	85	119	11.3254
GGGCGCAGAGGCAGGAGAGACUGGGCUGGGGUCA	chrX:153596124-153596369(-)$1	245	166	200	11.8357
CCUGCUCCUCUGCACCGCUGUAAUGUGAGUGGCA	chr8:11710073-11710304(-)$1	231	193	227	10.5225
GGAGUUCACCGAGGCUGAGAGCAACAUGAACGAC	chr6:30691959-30692176(+)$1	217	97	131	10.6499
CUGAGAAGUGUCUGUGAAUCCCAAGCCCAAUCUC	chr9:35717634-35717881(-)$1	247	35	69	10.7565
GAGCUCGGAGGACCAGACCUGGAAGCGGAUCCGG	chr22:41739318-41739601(+)$1	283	179	213	10.5863
GCGCCCCGGGGAGACGCUGCUCAUCCACUCGGGC	chr17:80041847-80042070(-)$1	223	116	150	12.9420
AGCAGAUGGCAGUGAAACUCCAGAGCCUUUUGCU	chr7:127343118-127343357(+)$1	239	120	154	14.7649
CACAGCGCUGCGCCGCACAGUGCCCCCCGCUGUC	chr16:30080754-30080997(+)$1	243	202	236	12.7437
UGAGUGACCCAGGUCUGAUAACCUUGGUGUCUUU	chr2:96949173-96949525(-)$1	352	21	55	13.8510
UGAACAGGGGAAGGCAAUUUCCUCCUCCCUGUCC	chr17:73832857-73833100(-)$1	243	41	75	13.8215
CGCAAGCAAAGCCAGGGACCCUGAGAGGCUUUGC	chr19:6389521-6389749(-)$1	228	52	86	13.1158
AUCCUCUUCCAUGAGACACUCUACCAGAAGGCGG	chr16:30078726-30078964(+)$1	238	163	197	11.4403
ACGUCGACGCCUCGUGAGAUCGCCAAGUCCCCGC	chr12:124827497-124827741(-)$1	244	10	44	15.3666
GUGGAGCUAGGGGCCUGCCUGCCCCACCCACCCC	chr7:75615657-75615918(+)$1	261	132	166	12.9476
GCCAUGCACUGGGGCACAGACUCCAGGUAGGCGU	chr1:1747126-1747370(-)$1	244	150	184	11.8388
AGGCAGUGGGCGGGAGGGAGGCCGGAGGAGCCUG	chr8:145008079-145008343(-)$1	264	195	229	12.0747
GAGUACGUGUGCCGUGUGGUCGGCAGCUCAGGUA	chr1:22175330-22175556(-)$1	226	83	117	13.4902
UCUUGCUUUAUUUCUCUCUUGGCAGAAUGCAGAG	chr5:132101000-132101282(-)$1	282	36	70	14.5712
AGUCCUCGAUACGCACUAUAGCACCGAGAAUGAC	chr15:91424450-91424675(+)$1	225	135	169	13.8214
CCAUUAAGAAGAAGGACGAGCUGGAGCGUGUGGC	chr19:58905948-58906182(+)$1	234	119	153	15.8337
GGGCUGUGCCACCCGCAACAGGACGGUGCCCUUC	chr3:53263235-53263494(-)$1	259	56	90	14.1733
GCUGACCAUGAAGCGGGACGGCAUUGGGUCAGUG	chr1:44455987-44456235(+)$1	248	6	40	13.9845
CUCAUCUACUUCUUCGUCCAGGUAAGGGGUGAGG	chr16:16208750-16209033(+)$1	283	162	196	11.9543
CUCUGGGUUAGGAGGCCUCACAGUGACCCUGUCC	chr16:30080528-30080742(+)$1	214	52	86	12.8512
GCAGUAGAGGAACCGGCAGAGGUCCCGGUCCCAG	chr16:89167573-89167848(+)$1	275	47	81	12.1187
AAGUGGGCAAGGCUGGCUAGGGUCUCUCUCCACC	chr6:31616394-31616627(-)$1	233	176	210	12.5348
UUCAGGGUUUGGGCGGGUGGGGCUAGAUUCUGAA	chr2:73478410-73478660(+)$1	250	173	207	15.7008
CUCGCGCCUCACCAAGUGCGUGGAACUGGGCGCC	chr11:64875173-64875412(+)$1	239	147	181	15.0378
CAGUAUCCUCGUCAAGACAGUGUGCGGGGUGGUG	chr10:71158339-71158600(+)$1	261	80	114	14.0358
GGCUUGGAUCAAUCUAAGAUGAACUGUGACCGAG	chr19:39330697-39330945(-)$1	248	138	172	17.0284
GGCUGCUGGAAGGUAAGGGGGGCGGCGGGCGGCU	chr12:111180356-111180620(-)$1	264	151	185	12.6627
UGGACAGCGAGGUGAUUCUGCACCAUGAGUAUUU	chr2:96952325-96952605(-)$1	280	33	67	11.4973
AGCUAAUGCUUGGGUUUAUUUUGAAGCAUUGGCC	chr5:149825094-149825350(-)$1	256	195	229	15.4586
CGAGCCGCCGCCCGAAAGGCCGGGCCGUCGUCUU	chr17:45727526-45727751(+)$1	225	19	53	12.2660
CCCAGGGGAAUGUGGGUCUGCAGUGGGCCUGUGG	chr19:38799767-38800026(-)$1	259	172	206	12.7162
GAGGUGGAGUAUUCACUCAGGAAUCUCUUCUGCA	chr9:130211464-130211697(-)$1	233	21	55	12.3746
AAGGCACUGCAGAGCAACCACUUUGAACUGAGCC	chr1:989058-989309(+)$1	251	78	112	13.4238
GGAAGUAAGUGCCCCUCCCUGGGCACCUCUGCCU	chr16:2222169-2222413(+)$1	244	202	236	13.5978
GGUUGGCUCCAUGACCAAGAUCUAUGGGGGACGU	chr19:42373000-42373208(+)$1	208	140	174	12.6936
ggacgcggcccccgcagccacgggcaccgcggcc	chr12:10875353-10875588(-)$1	235	51	85	12.5584
UCCUCUGGCUUGUUUUUUGUAGCAACUAUUGGAU	chr12:120637058-120637310(-)$1	252	0	34	12.5971
CGCCACAUUGGCAACGACAUUGUGACCAUCGUGU	chr11:65413652-65413933(+)$1	281	51	85	10.6368
CACGGGGCAGGAGCGCGUGGCCCUGGCCAACCGG	chr19:18649008-18649270(-)$1	262	111	145	10.6374
AACCAGCAGCUGCGGGAGCAGUCGGAGCAGCUGG	chr19:2213747-2214037(+)$1	290	163	197	11.5165
CGAGUGUCCCCCAAAUUACCUUGGGCCAUACUGU	chr1:109807444-109807686(+)$1	242	145	179	12.7108
GGCCCAGAUUUAUGGUGAGUCCCAGGAACUGGGC	chr19:39924204-39924411(-)$1	207	93	127	12.8516
UGCUGCAACUGCUCUCCUGUGCUCUGUGCGGCAG	chr1:19447603-19447886(-)$1	283	18	52	10.8934

#DB
(.(((((.((..((......))..)).))))).)	chr17:80041756-80041962(-)$1	1	2	36	14.6345
((..(.....((((......)))))..)))..))	chr12:53298416-53298676(-)$1	1	90	124	12.9016
((.((((.(((..(((....)))...)))..).)	chrX:153627828-153628035(+)$1	1	85	119	11.3254
))))))))..)(((......)))..(.(((((((	chrX:153596124-153596369(-)$1	1	166	200	11.8357
((((((.(((((((....))))....))).))))	chr8:11710073-11710304(-)$1	1	193	227	10.5225
(..(((((.....(((...)))....)))))..)	chr6:30691959-30692176(+)$1	1	97	131	10.6499
((((((...((.((.(....))).))....))))	chr9:35717634-35717881(-)$1	1	35	69	10.7565
...((...(((......)))))...)))).))))	chr22:41739318-41739601(+)$1	1	179	213	10.5863
))((((.(((((((......)).))).)).))))	chr17:80041847-80042070(-)$1	1	116	150	12.9420
((((((.(((..((......))..))).))))))	chr7:127343118-127343357(+)$1	1	120	154	14.7649
.((((((..((((......))))....)))))).	chr16:30080754-30080997(+)$1	1	202	236	12.7437
((((.(((((((((......))).))).)))..)	chr2:96949173-96949525(-)$1	1	21	55	13.8510
((.(((((((.(((......))).).)))))).)	chr17:73832857-73833100(-)$1	1	41	75	13.8215
.(.(((((((((((((...)))....))))))))	chr19:6389521-6389749(-)$1	1	52	86	13.1158
(((((((((....(((...)))....))))).))	chr16:30078726-30078964(+)$1	1	163	197	11.4403
.((..(((....((......))....)))..)).	chr12:124827497-124827741(-)$1	1	10	44	15.3666
((((.(...(((((......))))).))))))))	chr7:75615657-75615918(+)$1	1	132	166	12.9476
(((.(((.((((((......))))))))))))))	chr1:1747126-1747370(-)$1	1	150	184	11.8388
((((..(.(((.........))).)....)))))	chr8:145008079-145008343(-)$1	1	195	229	12.0747
(..(((.(((((((......)))))...)).)))	chr1:22175330-22175556(-)$1	1	83	117	13.4902
(.((((.((...((......))...)).)))).)	chr5:132101000-132101282(-)$1	1	36	70	14.5712
.(((((((....((......))..))))...)))	chr15:91424450-91424675(+)$1	1	135	169	13.8214
((((...(....((......))....)..)))))	chr19:58905948-58906182(+)$1	1	119	153	15.8337
((((...(((..((......))..)))))))..)	chr3:53263235-53263494(-)$1	1	56	90	14.1733
(((((((..((.((......)).)).)))))))(	chr1:44455987-44456235(+)$1	1	6	40	13.9845
(((((((.((((((.....))).)))))))))))	chr16:16208750-16209033(+)$1	1	162	196	11.9543
(...((((((...(......)..)))))).))))	chr16:30080528-30080742(+)$1	1	52	86	12.8512
...)))))((.(((......))).))(((((((.	chr16:89167573-89167848(+)$1	1	47	81	12.1187
..(((((..(((((......)))))..).)))))	chr6:31616394-31616627(-)$1	1	176	210	12.5348
((((((((((((.(......).))))))))))))	chr2:73478410-73478660(+)$1	1	173	207	15.7008
(..((((((..(((......)))....)))))).	chr11:64875173-64875412(+)$1	1	147	181	15.0378
((.(((((.(((((......)).)))))))).))	chr10:71158339-71158600(+)$1	1	80	114	14.0358
(((((((.(((.((......))....))))))))	chr19:39330697-39330945(-)$1	1	138	172	17.0284
(((((((.(..(.(......).)..).)))))))	chr12:111180356-111180620(-)$1	1	151	185	12.6627
((.....((.((((......)))).))..))).)	chr2:96952325-96952605(-)$1	1	33	67	11.4973
)((((((((((.((......)).)))))))))).	chr5:149825094-149825350(-)$1	1	195	229	15.4586
((((.(((.(((((......))))).).)).)))	chr17:45727526-45727751(+)$1	1	19	53	12.2660
((((.(((....((......)).....))).)))	chr19:38799767-38800026(-)$1	1	172	206	12.7162
.(((.((((.((((......))))))))))).))	chr9:130211464-130211697(-)$1	1	21	55	12.3746
.((((.(..(((((......)))))....).)))	chr1:989058-989309(+)$1	1	78	112	13.4238
(((.(((.((((((......))))))...))).)	chr16:2222169-2222413(+)$1	1	202	236	13.5978
))))))((((((((......)).))))))(((((	chr19:42373000-42373208(+)$1	1	140	174	12.6936
((.(((((..((((......))))..))))).))	chr12:10875353-10875588(-)$1	1	51	85	12.5584
(((..(((.(((((......))))))))..))).	chr12:120637058-120637310(-)$1	1	0	34	12.5971
...(((..(((..(((....)))..)))..))))	chr11:65413652-65413933(+)$1	1	51	85	10.6368
..(((((((((.((.....))))).)))..))).	chr19:18649008-18649270(-)$1	1	111	145	10.6374
..(((((.(((.(((......))).))).)))))	chr19:2213747-2214037(+)$1	1	163	197	11.5165
(((((((..(((((......)))))..))))).)	chr1:109807444-109807686(+)$1	1	145	179	12.7108
(((((((.(((.(((......))).)))))))))	chr19:39924204-39924411(-)$1	1	93	127	12.8516
(((((((...((........))....))))))))	chr1:19447603-19447886(-)$1	1	18	52	10.8934

#PSSM
c : 0.12	b : 0.12	g : 0.10	d : 0.10	[ : 0.08	= : 0.08	h : 0.06	" : 0.06	f : 0.06	: : 0.04	e : 0.04	i : 0.02	a : 0.02	E : 0.02	r : 0.02	F : 0.02	# : 0.02	! : 0.02	
c : 0.16	g : 0.10	b : 0.10	= : 0.10	! : 0.08	f : 0.08	d : 0.08	h : 0.06	" : 0.06	[ : 0.04	e : 0.04	i : 0.02	a : 0.02	r : 0.02	# : 0.02	: : 0.02	
c : 0.14	d : 0.12	e : 0.10	[ : 0.10	g : 0.10	= : 0.10	! : 0.08	f : 0.08	" : 0.04	h : 0.04	i : 0.02	b : 0.02	r : 0.02	$ : 0.02	# : 0.02	
e : 0.18	c : 0.16	d : 0.12	f : 0.12	= : 0.12	g : 0.10	! : 0.06	[ : 0.04	i : 0.02	b : 0.02	" : 0.02	h : 0.02	$ : 0.02	
e : 0.18	c : 0.12	f : 0.12	d : 0.10	[ : 0.10	= : 0.10	g : 0.08	! : 0.06	" : 0.04	a : 0.02	i : 0.02	b : 0.02	h : 0.02	$ : 0.02	
c : 0.19	e : 0.18	f : 0.12	d : 0.10	= : 0.10	g : 0.08	" : 0.06	$ : 0.04	i : 0.02	a : 0.02	! : 0.02	h : 0.02	b : 0.02	[ : 0.02	
e : 0.16	c : 0.14	f : 0.12	[ : 0.10	" : 0.10	= : 0.10	a : 0.08	$ : 0.04	d : 0.04	g : 0.04	i : 0.02	h : 0.02	b : 0.02	! : 0.02	
[ : 0.19	c : 0.16	! : 0.12	e : 0.10	" : 0.08	b : 0.08	f : 0.08	= : 0.06	d : 0.04	a : 0.04	$ : 0.02	i : 0.02	
c : 0.25	b : 0.12	! : 0.12	f : 0.12	# : 0.08	" : 0.06	= : 0.06	[ : 0.06	$ : 0.04	2 : 0.02	e : 0.02	a : 0.02	d : 0.02	
c : 0.30	e : 0.14	# : 0.10	b : 0.08	f : 0.08	= : 0.06	! : 0.06	$ : 0.04	" : 0.04	[ : 0.04	2 : 0.02	d : 0.02	a : 0.02	
c : 0.23	e : 0.14	d : 0.12	! : 0.10	# : 0.10	b : 0.06	= : 0.06	f : 0.06	[ : 0.04	" : 0.04	a : 0.02	$ : 0.02	
c : 0.16	[ : 0.14	e : 0.14	d : 0.12	! : 0.10	# : 0.10	f : 0.06	= : 0.04	" : 0.04	$ : 0.02	o : 0.02	r : 0.02	a : 0.02	b : 0.02	
b : 0.32	c : 0.16	e : 0.14	d : 0.12	! : 0.04	f : 0.04	[ : 0.04	$ : 0.02	o : 0.02	= : 0.02	# : 0.02	r : 0.02	" : 0.02	q : 0.02	
b : 0.32	c : 0.25	e : 0.14	d : 0.10	a : 0.06	o : 0.04	f : 0.04	r : 0.02	q : 0.02	
o : 0.74	c : 0.14	n : 0.04	m : 0.02	[ : 0.02	r : 0.02	q : 0.02	
o : 0.78	c : 0.10	n : 0.04	m : 0.02	a : 0.02	r : 0.02	q : 0.02	
o : 0.78	m : 0.08	l : 0.06	n : 0.04	r : 0.02	q : 0.02	
o : 0.76	m : 0.08	l : 0.06	n : 0.04	c : 0.02	r : 0.02	q : 0.02	
o : 0.76	m : 0.06	l : 0.06	n : 0.04	d : 0.02	c : 0.02	r : 0.02	q : 0.02	
o : 0.74	c : 0.10	m : 0.06	d : 0.04	r : 0.02	b : 0.02	q : 0.02	
b : 0.34	c : 0.23	e : 0.14	d : 0.12	a : 0.08	f : 0.04	o : 0.04	
b : 0.34	c : 0.30	e : 0.14	d : 0.12	f : 0.04	] : 0.04	2 : 0.02	
c : 0.21	4 : 0.16	e : 0.14	] : 0.12	2 : 0.10	d : 0.10	3 : 0.04	f : 0.04	b : 0.02	= : 0.02	a : 0.02	5 : 0.02	
4 : 0.19	e : 0.14	2 : 0.12	c : 0.12	] : 0.10	d : 0.08	f : 0.08	3 : 0.06	= : 0.04	: : 0.02	b : 0.02	5 : 0.02	
4 : 0.19	e : 0.14	c : 0.12	b : 0.08	f : 0.08	] : 0.08	a : 0.06	3 : 0.06	2 : 0.06	d : 0.04	= : 0.04	: : 0.02	5 : 0.02	
4 : 0.23	c : 0.21	b : 0.10	2 : 0.08	] : 0.08	f : 0.08	d : 0.06	3 : 0.04	a : 0.04	= : 0.04	5 : 0.02	
c : 0.25	4 : 0.10	= : 0.10	e : 0.08	] : 0.06	2 : 0.06	d : 0.06	f : 0.06	a : 0.06	3 : 0.04	b : 0.04	g : 0.04	[ : 0.02	5 : 0.02	
c : 0.23	e : 0.12	d : 0.10	f : 0.10	= : 0.10	] : 0.08	4 : 0.06	3 : 0.04	2 : 0.04	g : 0.04	i : 0.02	b : 0.02	a : 0.02	h : 0.02	
c : 0.18	f : 0.14	e : 0.12	= : 0.10	2 : 0.10	d : 0.08	4 : 0.06	b : 0.06	3 : 0.04	g : 0.04	] : 0.04	i : 0.02	h : 0.02	
e : 0.16	c : 0.12	f : 0.12	= : 0.12	2 : 0.10	] : 0.08	d : 0.08	g : 0.06	h : 0.04	b : 0.04	i : 0.02	4 : 0.02	3 : 0.02	a : 0.02	
e : 0.18	f : 0.14	c : 0.14	= : 0.12	g : 0.10	d : 0.10	] : 0.08	2 : 0.06	h : 0.04	i : 0.02	3 : 0.02	
f : 0.16	c : 0.16	= : 0.12	e : 0.10	g : 0.10	2 : 0.08	d : 0.08	] : 0.08	a : 0.04	h : 0.04	i : 0.02	b : 0.02	
c : 0.18	] : 0.14	f : 0.14	g : 0.12	= : 0.12	d : 0.08	2 : 0.06	e : 0.06	b : 0.04	h : 0.04	i : 0.02	
c : 0.19	f : 0.12	d : 0.10	= : 0.10	g : 0.08	b : 0.08	e : 0.08	2 : 0.04	h : 0.04	: : 0.04	i : 0.02	a : 0.02	] : 0.02	D : 0.02	$ : 0.02	4 : 0.02	

#score	646.3504579158221
#seq	50
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_CDS_m3_run1.txt

#BEAR
FFFFFYYEEEEEYYCCCDD	chr7:882880-883147(+)$1	267	223	242	11.6631
GGGG}BBDDDDZZZEEEEE	chr6:33179068-33179348(+)$1	280	167	186	9.4048
?CCCYYFFFFFFYYEEEEE	chr6:31785233-31785539(+)$1	306	285	304	10.3982
EEEEEDDDDBB~~~~FFFF	chr14:38265947-38266292(+)$1	345	175	194	10.3843
A}CCCZZZDDDD}EEEEEF	chr2:232325096-232325352(-)$1	256	179	198	10.7610
FFFF}BB}ACCCYYEEEEE	chr3:49050980-49051207(+)$1	227	186	205	11.5983
FFFCCC}EEEEE}DDDD}A	chr6:32945798-32946030(+)$1	232	180	199	10.1775
:EEEEE}CCC~~~~AYYII	chr1:28176899-28177192(+)$1	293	250	269	10.8136
B}CCCA}EEEEEYYCCC::	chr11:61079177-61079481(-)$1	304	249	268	9.8768
EEEEEZZZBB}BBEEEEEZ	chr2:230695342-230695697(-)$1	355	256	275	11.0967
fDDDD}EEEEEZZZEEEEE	chr1:249151582-249151903(-)$1	321	245	264	10.4904
FFFFFF}DDDD}EEEEE}A	chr3:58106866-58107093(+)$1	227	111	130	10.5565
FFFFFFZZZCCC}EEEEE}	chr16:75270524-75270831(-)$1	307	239	258	10.2761
:DDDDYYCCC}A~~~~CCC	chr17:75494563-75494796(+)$1	233	115	134	10.0781
FFFBB}A}DDDDYYBBBB}	chr2:208576454-208576744(+)$1	290	221	240	10.5138
~~~~BB}EEEEEYYDDDD}	chr1:247050401-247050695(-)$1	294	252	271	11.2186
EEEEA}FFFFFFYYEEEEE	chrY:15026437-15026739(+)$1	302	181	200	11.6944
EEEEE}CCC}ABB}EEEEE	chr14:32546485-32546788(+)$1	303	229	248	11.2324
EEEEE}DDDD}DDDDFFFF	chr5:147778546-147778806(+)$1	260	114	133	9.0873
DDDEEEEEDDDDZZZHHHH	chr12:6700983-6701234(-)$1	251	183	202	8.6990
DDDDDYYFFFFFF}BB}DD	chr7:2414097-2414367(+)$1	270	249	268	9.0107
EEEEE}BB}CCCFFFFFF:	chr1:46035407-46035687(+)$1	280	211	230	8.9169
CCC}AYYEEEEE}DDDDZZ	chr14:21679368-21679627(-)$1	259	232	251	9.6541
}FFFFFFFFFFFF}EEEEE	chr16:2820212-2820477(+)$1	265	231	250	9.6960
IIIICCC}DDDD}FFFFFF	chr8:48761936-48762162(-)$1	226	172	191	8.2184
EEEEEYYEEEEEYYEEEEE	chr2:232325152-232325375(-)$1	223	164	183	13.6741
DDDDZZZDDDD}BBYYCCC	chr14:21963401-21963758(+)$1	357	319	338	9.6022
EEE}CCCEEEEEYYEEEEE	chrX:53613674-53613914(-)$1	240	171	190	12.1424
FFFFFYYAYYEEEEEHHHH	chr16:11990430-11990691(-)$1	261	168	187	9.5730
HHHHH}EEEEE~~~~BB::	chr17:74732098-74732358(-)$1	260	185	204	8.7754
EEEEEZZZCCCZZZEEEEE	chr3:139092393-139092653(-)$1	260	172	191	11.9119
D}BBZZZFFFFFF~~~~HH	chr2:64796198-64796501(+)$1	303	213	232	8.9475
:DDDDYYDDDDBB}BBDDD	chr11:62290705-62290942(-)$1	237	212	231	9.3300
FFFFFFYYBB}A}EEEEEd	chrM:14201-14443(-)$1	242	180	199	10.0714
EEEE}A~~~~BBYYEEEEE	chr7:77166709-77166969(+)$1	260	113	132	12.4100
}EEEEEA}DDDDYYIIIII	chr1:39888342-39888594(+)$1	252	220	239	9.7250
BB}CCC}EEEEEYYCCC::	chr2:61192081-61192346(-)$1	265	244	263	9.7139
CCCFFFFFF}CCC}EEEEE	chr1:114952699-114952972(-)$1	273	228	247	9.1617
FFFFFFYYCCCYYFFFFFF	chr7:5402239-5402489(-)$1	250	207	226	10.1709
:::CCC}EEEEEYYEEEEE	chr4:83348241-83348477(-)$1	236	216	235	10.6265
FDDDDYYDDDD~~~~BBYY	chr11:72423483-72423761(-)$1	278	176	195	11.2934
:DDDDYYEEEEE}CCC}BB	chr12:123997760-123998017(-)$1	257	102	121	9.6536
EEEEEYYCCC}BBYYBB}C	chr14:23528320-23528582(-)$1	262	241	260	11.2179
?????BB}DDDDYYAEEEE	chr6:33179168-33179451(+)$1	283	239	258	8.7641
FFFFZZZDDDD~~~~EEEE	chr6:7574859-7575088(+)$1	229	134	153	12.1304
FFFFF}CCC}CCC}BB:::	chr5:111071014-111071297(-)$1	283	239	258	7.7544
~~~~FFFFFF~~~~EEEEE	chr11:2972896-2973152(-)$1	256	235	254	10.7849
}EEEEE}CCC~~~~DDDD}	chr6:31937062-31937312(+)$1	250	229	248	11.2662
F}CCCYYEEEEEYYFFFFF	chr9:94118123-94118392(-)$1	269	248	267	11.7151
CCCCCC}CCCEEEEE}CCC	chr14:102471402-102471637(+)$1	235	165	184	9.0511
FFFFFF}FFFFFF}AYYGG	chr16:4721241-4721505(+)$1	264	137	156	9.0149

#otherMatches

#Seq PSSM
CCGCGGCCCCCGGGCCCGU	chr7:882880-883147(+)$1	267	223	242	11.6631
CCCAGCCCCCCAGAGCCAG	chr6:33179068-33179348(+)$1	280	167	186	9.4048
UUUCUGUUUGUCAGUUCUC	chr6:31785233-31785539(+)$1	306	285	304	10.3982
AAAGUUCAAAUGAAGGCCA	chr14:38265947-38266292(+)$1	345	175	194	10.3843
AGGGGAUAUGGGGGAGAUA	chr2:232325096-232325352(-)$1	256	179	198	10.7610
AGUGAGGGGCCCGACUUGA	chr3:49050980-49051207(+)$1	227	186	205	11.5983
AAGAGAAAAAGAAGAAACG	chr6:32945798-32946030(+)$1	232	180	199	10.1775
ACUUGCAUUGUAGAGAAAG	chr1:28176899-28177192(+)$1	293	250	269	10.8136
AUGACCUUAGAGcaggggc	chr11:61079177-61079481(-)$1	304	249	268	9.8768
CAUUACCAUGAGCUACCUG	chr2:230695342-230695697(-)$1	355	256	275	11.0967
GUGCUCUUGUCUCAUGCCC	chr1:249151582-249151903(-)$1	321	245	264	10.4904
UGGGAAGGAUCAGGAGUUC	chr3:58106866-58107093(+)$1	227	111	130	10.5565
GUCGGCAGAACCGCCUGUU	chr16:75270524-75270831(-)$1	307	239	258	10.2761
AGGGCAGCAGCGCCAUGGC	chr17:75494563-75494796(+)$1	233	115	134	10.0781
GGCGCGCGGGGUCGGCGGA	chr2:208576454-208576744(+)$1	290	221	240	10.5138
AUUUGGUAUUAAAAGAUAU	chr1:247050401-247050695(-)$1	294	252	271	11.2186
GUUGACUUUUCUAACGGAU	chrY:15026437-15026739(+)$1	302	181	200	11.6944
GCCCCGCUCGGUCGCCGCU	chr14:32546485-32546788(+)$1	303	229	248	11.2324
CUGUGCAGGGCGGUGGUGG	chr5:147778546-147778806(+)$1	260	114	133	9.0873
GGUUGGGUCUUCUCCAUGU	chr12:6700983-6701234(-)$1	251	183	202	8.6990
CGCUGAAAGGGUUGCCCCA	chr7:2414097-2414367(+)$1	270	249	268	9.0107
CCCGUACUGAGACCACAGC	chr1:46035407-46035687(+)$1	280	211	230	8.9169
AGGAUGACUCUUAAGCACA	chr14:21679368-21679627(-)$1	259	232	251	9.6541
CCCUCACCACGGGACCAGC	chr16:2820212-2820477(+)$1	265	231	250	9.6960
UAUUGUGUGCUUGAACAAA	chr8:48761936-48762162(-)$1	226	172	191	8.2184
AGCCAAGAAACAGAAAGUG	chr2:232325152-232325375(-)$1	223	164	183	13.6741
CACAUAAGCCAAAGAUGAU	chr14:21963401-21963758(+)$1	357	319	338	9.6022
AAGUGAGUAACCCUAUAUC	chrX:53613674-53613914(-)$1	240	171	190	12.1424
CAUGAAAUGAUGGAGGAGG	chr16:11990430-11990691(-)$1	261	168	187	9.5730
UUUGAGUCGUGUUAAUGUA	chr17:74732098-74732358(-)$1	260	185	204	8.7754
UGGACAUAGGCAAAACCAU	chr3:139092393-139092653(-)$1	260	172	191	11.9119
GUCAUACUUCUGUUUAAGC	chr2:64796198-64796501(+)$1	303	213	232	8.9475
ACAUCGAAGGCUCAGAGGG	chr11:62290705-62290942(-)$1	237	212	231	9.3300
GAUCCUAUUGGUGCGGGGG	chrM:14201-14443(-)$1	242	180	199	10.0714
ggcgggggggccAGCGACC	chr7:77166709-77166969(+)$1	260	113	132	12.4100
AGAACAGAAGGUAAGUGAG	chr1:39888342-39888594(+)$1	252	220	239	9.7250
AUGGCAACUCUAUUAUACU	chr2:61192081-61192346(-)$1	265	244	263	9.7139
cuuagucagaauucuccag	chr1:114952699-114952972(-)$1	273	228	247	9.1617
GGGUGAGCGGCUGGCUGCU	chr7:5402239-5402489(-)$1	250	207	226	10.1709
AAAACUUUAAACUUAAAAC	chr4:83348241-83348477(-)$1	236	216	235	10.6265
GGGCCGUGCGCGUGGCCAG	chr11:72423483-72423761(-)$1	278	176	195	11.2934
GGAGUAAAUGAGUGAGUGG	chr12:123997760-123998017(-)$1	257	102	121	9.6536
AGCUGCAGGUACCAGCCAC	chr14:23528320-23528582(-)$1	262	241	260	11.2179
AAAUACCACCCCAACCCAG	chr6:33179168-33179451(+)$1	283	239	258	8.7641
UGGAUAAAGUGGAAGCUUA	chr6:7574859-7575088(+)$1	229	134	153	12.1304
AGCUUUUUCAUUUGAAUAC	chr5:111071014-111071297(-)$1	283	239	258	7.7544
UAAACCCAUUUUUUGUGAC	chr11:2972896-2973152(-)$1	256	235	254	10.7849
CCCUUCUCCGAGUUGGCAG	chr6:31937062-31937312(+)$1	250	229	248	11.2662
AUGAAAUUAAACUGUAGUC	chr9:94118123-94118392(-)$1	269	248	267	11.7151
CACUUGGUUAGUCUCACAC	chr14:102471402-102471637(+)$1	235	165	184	9.0511
CUCUGCUCUCCAGGUGGAC	chr16:4721241-4721505(+)$1	264	137	156	9.0149

#DB
)))))..)))))..)))))	chr7:882880-883147(+)$1	1	223	242	11.6631
)))).))))))...)))))	chr6:33179068-33179348(+)$1	1	167	186	9.4048
.)))..))))))..)))))	chr6:31785233-31785539(+)$1	1	285	304	10.3982
)))))))))))....))))	chr14:38265947-38266292(+)$1	1	175	194	10.3843
).)))...)))).))))))	chr2:232325096-232325352(-)$1	1	179	198	10.7610
)))).)).))))..)))))	chr3:49050980-49051207(+)$1	1	186	205	11.5983
)))))).))))).)))).)	chr6:32945798-32946030(+)$1	1	180	199	10.1775
.))))).)))....)..))	chr1:28176899-28177192(+)$1	1	250	269	10.8136
).)))).)))))..)))..	chr11:61079177-61079481(-)$1	1	249	268	9.8768
)))))...)).))))))).	chr2:230695342-230695697(-)$1	1	256	275	11.0967
))))).)))))...)))))	chr1:249151582-249151903(-)$1	1	245	264	10.4904
)))))).)))).))))).)	chr3:58106866-58107093(+)$1	1	111	130	10.5565
))))))...))).))))).	chr16:75270524-75270831(-)$1	1	239	258	10.2761
.))))..))).)....)))	chr17:75494563-75494796(+)$1	1	115	134	10.0781
))))).).))))..)))).	chr2:208576454-208576744(+)$1	1	221	240	10.5138
....)).)))))..)))).	chr1:247050401-247050695(-)$1	1	252	271	11.2186
))))).))))))..)))))	chrY:15026437-15026739(+)$1	1	181	200	11.6944
))))).))).))).)))))	chr14:32546485-32546788(+)$1	1	229	248	11.2324
))))).)))).))))))))	chr5:147778546-147778806(+)$1	1	114	133	9.0873
))))))))))))...))))	chr12:6700983-6701234(-)$1	1	183	202	8.6990
)))))..)))))).)).))	chr7:2414097-2414367(+)$1	1	249	268	9.0107
))))).)).))))))))).	chr1:46035407-46035687(+)$1	1	211	230	8.9169
))).)..))))).))))..	chr14:21679368-21679627(-)$1	1	232	251	9.6541
.)))))))))))).)))))	chr16:2820212-2820477(+)$1	1	231	250	9.6960
))))))).)))).))))))	chr8:48761936-48762162(-)$1	1	172	191	8.2184
)))))..)))))..)))))	chr2:232325152-232325375(-)$1	1	164	183	13.6741
))))...)))).))..)))	chr14:21963401-21963758(+)$1	1	319	338	9.6022
))).))))))))..)))))	chrX:53613674-53613914(-)$1	1	171	190	12.1424
)))))..)..)))))))))	chr16:11990430-11990691(-)$1	1	168	187	9.5730
))))).)))))....))..	chr17:74732098-74732358(-)$1	1	185	204	8.7754
)))))...)))...)))))	chr3:139092393-139092653(-)$1	1	172	191	11.9119
).))...))))))....))	chr2:64796198-64796501(+)$1	1	213	232	8.9475
.))))..)))))).)))))	chr11:62290705-62290942(-)$1	1	212	231	9.3300
))))))..)).).)))))(	chrM:14201-14443(-)$1	1	180	199	10.0714
)))).)....))..)))))	chr7:77166709-77166969(+)$1	1	113	132	12.4100
.)))))).))))..)))))	chr1:39888342-39888594(+)$1	1	220	239	9.7250
)).))).)))))..)))..	chr2:61192081-61192346(-)$1	1	244	263	9.7139
))))))))).))).)))))	chr1:114952699-114952972(-)$1	1	228	247	9.1617
))))))..)))..))))))	chr7:5402239-5402489(-)$1	1	207	226	10.1709
...))).)))))..)))))	chr4:83348241-83348477(-)$1	1	216	235	10.6265
)))))..))))....))..	chr11:72423483-72423761(-)$1	1	176	195	11.2934
.))))..))))).))).))	chr12:123997760-123998017(-)$1	1	102	121	9.6536
)))))..))).))..)).)	chr14:23528320-23528582(-)$1	1	241	260	11.2179
.....)).))))..)))))	chr6:33179168-33179451(+)$1	1	239	258	8.7641
))))...))))....))))	chr6:7574859-7575088(+)$1	1	134	153	12.1304
))))).))).))).))...	chr5:111071014-111071297(-)$1	1	239	258	7.7544
....))))))....)))))	chr11:2972896-2973152(-)$1	1	235	254	10.7849
.))))).)))....)))).	chr6:31937062-31937312(+)$1	1	229	248	11.2662
).)))..)))))..)))))	chr9:94118123-94118392(-)$1	1	248	267	11.7151
)))))).)))))))).)))	chr14:102471402-102471637(+)$1	1	165	184	9.0511
)))))).)))))).)..))	chr16:4721241-4721505(+)$1	1	137	156	9.0149

#PSSM
F : 0.27	E : 0.21	: : 0.09	D : 0.07	C : 0.05	} : 0.05	? : 0.03	B : 0.03	~ : 0.03	G : 0.01	A : 0.01	f : 0.01	I : 0.01	H : 0.01	
E : 0.27	F : 0.25	D : 0.15	C : 0.07	} : 0.07	~ : 0.03	G : 0.01	I : 0.01	H : 0.01	B : 0.01	: : 0.01	? : 0.01	
E : 0.27	F : 0.25	D : 0.15	C : 0.13	~ : 0.03	G : 0.01	I : 0.01	H : 0.01	B : 0.01	} : 0.01	: : 0.01	? : 0.01	
E : 0.27	F : 0.23	C : 0.15	D : 0.13	B : 0.03	~ : 0.03	} : 0.03	G : 0.01	I : 0.01	H : 0.01	? : 0.01	
E : 0.23	F : 0.21	C : 0.17	D : 0.11	} : 0.05	Z : 0.05	B : 0.03	A : 0.03	Y : 0.01	H : 0.01	? : 0.01	
Y : 0.23	} : 0.15	F : 0.15	Z : 0.11	C : 0.11	B : 0.07	E : 0.07	A : 0.03	D : 0.01	
Y : 0.25	} : 0.19	Z : 0.13	F : 0.09	B : 0.07	C : 0.07	E : 0.05	D : 0.03	A : 0.03	~ : 0.01	
E : 0.27	D : 0.15	F : 0.15	C : 0.13	} : 0.09	Z : 0.07	Y : 0.03	B : 0.01	A : 0.01	~ : 0.01	
D : 0.27	E : 0.25	C : 0.17	F : 0.15	B : 0.03	A : 0.01	Z : 0.01	} : 0.01	Y : 0.01	~ : 0.01	
E : 0.25	D : 0.25	C : 0.19	F : 0.13	B : 0.05	} : 0.05	Y : 0.01	~ : 0.01	
E : 0.29	D : 0.23	C : 0.13	F : 0.11	} : 0.09	~ : 0.05	B : 0.03	A : 0.01	
E : 0.25	~ : 0.13	D : 0.13	F : 0.11	C : 0.09	B : 0.09	Z : 0.05	} : 0.03	A : 0.03	Y : 0.01	
Y : 0.31	~ : 0.15	} : 0.13	B : 0.09	F : 0.09	Z : 0.07	E : 0.05	C : 0.03	D : 0.01	
Y : 0.31	~ : 0.17	E : 0.13	} : 0.13	Z : 0.07	D : 0.05	F : 0.05	B : 0.01	C : 0.01	
E : 0.41	~ : 0.11	D : 0.09	C : 0.07	B : 0.07	F : 0.07	A : 0.05	Y : 0.03	Z : 0.01	I : 0.01	
E : 0.41	B : 0.13	F : 0.11	C : 0.07	D : 0.07	Y : 0.05	~ : 0.03	H : 0.03	I : 0.01	} : 0.01	
E : 0.41	C : 0.11	F : 0.11	D : 0.09	B : 0.07	Y : 0.03	H : 0.03	} : 0.03	~ : 0.01	I : 0.01	: : 0.01	
E : 0.39	F : 0.11	D : 0.09	: : 0.07	} : 0.05	C : 0.05	H : 0.05	I : 0.03	B : 0.03	Z : 0.01	Y : 0.01	G : 0.01	
E : 0.31	F : 0.11	: : 0.09	} : 0.07	C : 0.07	D : 0.05	H : 0.05	A : 0.03	I : 0.03	Z : 0.03	d : 0.01	Y : 0.01	B : 0.01	G : 0.01	

#score	524.0010422858527
#seq	51
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_CDS_m3_run1.txt

#BEAR
!!dddd[cccooooooccc333dddd5	chr15:40915824-40916130(+)$1	306	7	34	14.4173
cc"""a!!cccmmmmccc22a4444cc	chr1:46073041-46073268(+)$1	227	99	126	10.4173
!!dddd[cccooooooccc333dddd5	chr15:40915618-40915916(+)$1	298	213	240	14.4173
iiiiiiiibboooooobb]iiiiiiii	chr2:109380767-109381073(+)$1	306	18	45	13.2150
d"""a!!cccooooooccc22adddd4	chr3:47950730-47950998(-)$1	268	93	120	15.5234
b[ccc"""bboooooobb22cccbb33	chr4:104067020-104067291(-)$1	271	89	116	12.8194
cc"""eeeeeooooooeeeee4444cc	chr2:152320656-152320929(+)$1	273	167	194	13.4559
%%ccc!!cccooooooccc]ccc7777	chr3:37368361-37368680(+)$1	319	155	182	11.7144
ff[gggggggooooooggggggg]fff	chr1:39800072-39800355(+)$1	283	159	186	12.7332
d!!bb!!cccooooooccc22bbdddd	chr3:37367159-37367385(+)$1	226	132	159	14.1422
eeeee!!cccooooooccc22eeeee2	chr5:112177766-112178081(+)$1	315	50	77	14.2819
cc"""a!!cccmmmmccc22a4444cc	chr1:46073068-46073296(+)$1	228	72	99	10.4173
ccc"""ddddoooooodddd333ccc2	chr2:109382613-109382880(+)$1	267	187	214	14.6711
[iiiiiiiiiooooooiiiiiiiii]a	chr8:94747038-94747354(-)$1	316	204	231	13.9629
dbb[a!!cccooooooccc22a]bb]d	chr8:124267583-124267823(-)$1	240	60	87	14.6042
c!!bbeeeeeooooooeeeee22bb22	chr8:94746655-94746889(-)$1	234	197	224	11.5660
d[ccc[ddddoooooodddd4444ccc	chr1:203768747-203768965(+)$1	218	58	85	14.0111
"ccc[a[ccclllcccaccc333bb33	chr11:62286278-62286504(-)$1	226	82	109	10.5331
ffff"""cccoooooocccffffffff	chr15:40913962-40914228(+)$1	266	180	207	13.5596
======[cccooooooccc========	chr1:39798462-39798740(+)$1	278	248	275	15.8209
[dddd[acccooooooccc]a]dddd]	chr11:62292324-62292588(-)$1	264	120	147	14.3230
ccc####cccooooooccc4444ccce	chr7:91631469-91631715(+)$1	246	71	98	15.6443
eee[bbddddoooooodddd]bb333e	chr3:15084401-15084659(-)$1	258	200	227	12.1439
ffff[bbcccooooooccc]bb22fff	chr4:435963-436286(-)$1	323	101	128	12.5229
fff[ffffffooooooffffff]ffff	chr8:30700685-30700961(-)$1	276	5	32	11.1409
iiiiiiiibboooooobb]iiiiiiii	chr2:109380719-109380967(+)$1	248	66	93	13.2150
[dddd!!cccooooooccc22dddd22	chr6:87969501-87969785(+)$1	284	164	191	14.4250
dd[ccc[cccooooooccc]ccc]ddd	chr16:89217319-89217620(+)$1	301	4	31	14.1878
=========bbnnnnnbb]========	chr8:30704754-30705012(-)$1	258	116	143	9.7205
==========oooooo==========:	chr3:37366040-37366267(+)$1	227	149	176	13.9320
ffffff[cccooooooccc22ffffff	chr11:62291278-62291538(-)$1	260	167	194	13.7783
eeeee[ddddoooooodddd]eeeee]	chr1:39799611-39799914(+)$1	303	220	247	12.4766
[bb!!a[cccooooooccc]a22bb]c	chr11:62293793-62294035(-)$1	242	187	214	14.6294
cc"""eeeeeooooooeeeee4444cc	chr2:152320574-152320853(+)$1	279	249	276	13.4559
========[aooooooa22========	chr1:40702857-40703137(+)$1	280	224	251	14.0732
"==========nnnnn==========h	chr13:23911786-23912097(-)$1	311	234	261	10.3916
ggggggddddooooooddddccc[ccc	chr1:203767118-203767364(+)$1	246	114	141	12.7716
!!ccc!!cccooooooccc22ccc22b	chr11:5510007-5510292(-)$1	285	52	79	14.8452
dddddddcccooooooccc]ddddddd	chr2:109383620-109383910(+)$1	290	86	113	12.7202
[gggggggcccnnnnnccc]ggggggg	chr2:175436869-175437146(+)$1	277	125	152	10.0283
eee####cccooooooccc4444eeee	chr11:5424061-5424366(-)$1	305	222	249	15.1175
bb[a!!ddddoooooodddd22abb33	chr11:62285422-62285673(-)$1	251	137	164	13.4000
[ddddeeeeeooooooeeeee]ddddc	chr6:87965684-87965973(+)$1	289	80	107	11.7569
ff"""eeeeeooooooeeeee4444ff	chr22:22869717-22870019(-)$1	302	253	280	13.1283
dd####ddddoooooodddd22dddd5	chr15:40917717-40917942(+)$1	225	125	152	12.8807
ffffffddddooooooddddeeeeedd	chr3:47165076-47165349(-)$1	273	81	108	11.6380
eeeeeee[bboooooobb333eeeeeE	chr8:94747343-94747680(-)$1	337	165	192	11.1631
iiiiiiii[ccclllccc]iiiiiiii	chr1:203766802-203767104(+)$1	302	85	112	9.5475
&ffffffcccooooooccc22ffffff	chr12:32135093-32135387(+)$1	294	34	61	12.7943
hhccc[ddddoooooodddd333ccc]	chr17:58326922-58327203(-)$1	281	171	198	13.9927

#otherMatches

#Seq PSSM
GAUGACAUGGAGAUCACUAGGAGUCAC	chr15:40915824-40916130(+)$1	306	7	34	14.4173
GGAUAUAAGUAAAUCUGCAGAGGAGCC	chr1:46073041-46073268(+)$1	227	99	126	10.4173
GAUGACAUGGAGAUCACUAGGAGUCAC	chr15:40915618-40915916(+)$1	298	213	240	14.4173
UUGUAUGGCAUGCCCUUGAUUAUGCAG	chr2:109380767-109381073(+)$1	306	18	45	13.2150
AAUUGAAAGAAAUUAGUCUGGCUUGUA	chr3:47950730-47950998(-)$1	268	93	120	15.5234
UACCAAAAUCGUGAGUGAGAUGGAGCA	chr4:104067020-104067291(-)$1	271	89	116	12.8194
CUGAAAAUCAGUCACAUGAUUAUAAAG	chr2:152320656-152320929(+)$1	273	167	194	13.4559
AAUGUGGCAGCAUAUACUGAACAAGAA	chr3:37368361-37368680(+)$1	319	155	182	11.7144
GGGGUGAGCGACAAAGUGCUUACAUUG	chr1:39800072-39800355(+)$1	283	159	186	12.7332
AAUUAAGAGCAUGAAGGCUGAUAUUGA	chr3:37367159-37367385(+)$1	226	132	159	14.1422
UUGGAAACUAAAAAGAUAGAAUCUGAA	chr5:112177766-112178081(+)$1	315	50	77	14.2819
GGAUAUAAGUAAAUCUGCAGAGGAGCC	chr1:46073068-46073296(+)$1	228	72	99	10.4173
GUGAUUUUUGGCCAAACAAGUAGCACU	chr2:109382613-109382880(+)$1	267	187	214	14.6711
GCUCGCUCACAGUCACGUGAGCGAGGU	chr8:94747038-94747354(-)$1	316	204	231	13.9629
ACAAUCUUUGAACAAACAAUAAAUGAU	chr8:124267583-124267823(-)$1	240	60	87	14.6042
GGACUUCAGGCAACCCCCUGAGGAGGA	chr8:94746655-94746889(-)$1	234	197	224	11.5660
UACUCCUUUCCCUGCAGAAACUCAGAG	chr1:203768747-203768965(+)$1	218	58	85	14.0111
AGGGUGACCUGAAAGGCCCCAAAGUGC	chr11:62286278-62286504(-)$1	226	82	109	10.5331
GAUAGAAAGACUGAACUCUUAUCAGGU	chr15:40913962-40914228(+)$1	266	180	207	13.5596
UUUUCUGUUGAAACACCAAAGAAAGAA	chr1:39798462-39798740(+)$1	278	248	275	15.8209
GUUCAAGGCCCAGACUGGCACCUGAAG	chr11:62292324-62292588(-)$1	264	120	147	14.3230
UGCACAACUUGAAGCAGAGAAUAGCAU	chr7:91631469-91631715(+)$1	246	71	98	15.6443
UGUAGGGGAUUAUGCUGUCUAUCGAAA	chr3:15084401-15084659(-)$1	258	200	227	12.1439
CAUACUGGAGAAAAACCUUACAAAUGU	chr4:435963-436286(-)$1	323	101	128	12.5229
GAAAUGAUCUCCUCAAAGGUUAAUUUU	chr8:30700685-30700961(-)$1	276	5	32	11.1409
UUGUAUGGCAUGCCCUUGAUUAUGCAG	chr2:109380719-109380967(+)$1	248	66	93	13.2150
AGAUACAGUCCUUACAGACCUUAUCGA	chr6:87969501-87969785(+)$1	284	164	191	14.4250
uuagaggauuaauccaaauguuccaac	chr16:89217319-89217620(+)$1	301	4	31	14.1878
UAAUGCAGUGUCAGCAGCAACUGCAUU	chr8:30704754-30705012(-)$1	258	116	143	9.7205
UUCAUAUUUUGAAUGAGGAAUAUGAAA	chr3:37366040-37366267(+)$1	227	149	176	13.9320
GGGCCCAAGUAUGAACAUUGAGGGCCC	chr11:62291278-62291538(-)$1	260	167	194	13.7783
UGGCUUAAUUGGUGAAGAUUUAGCCGA	chr1:39799611-39799914(+)$1	303	220	247	12.4766
GUUAACAUUGAAGGACCAGAGGGAAAG	chr11:62293793-62294035(-)$1	242	187	214	14.6294
CUGAAAAUCAGUCACAUGAUUAUAAAG	chr2:152320574-152320853(+)$1	279	249	276	13.4559
GCUCUUCAGCUUCAAUGAAUGAAGAGC	chr1:40702857-40703137(+)$1	280	224	251	14.0732
UUUCAGAGAAACAGUUUUUUUCUGAAG	chr13:23911786-23912097(-)$1	311	234	261	10.3916
GGAGAGGAGGACUUUACCUUGGAUGUG	chr1:203767118-203767364(+)$1	246	114	141	12.7716
CCAGGCAUCCACCAAAGGAAAUCUCAC	chr11:5510007-5510292(-)$1	285	52	79	14.8452
GUCAGUAGUAGCUCAGUACAUGCUUCU	chr2:109383620-109383910(+)$1	290	86	113	12.7202
GCUUUGAGCCCACGUCGGGCCUUGGGG	chr2:175436869-175437146(+)$1	277	125	152	10.0283
GAGAACAUCUGGAAAAAGACAAGCUUC	chr11:5424061-5424366(-)$1	305	222	249	15.1175
UGUGGACUUUAACUUGGAAGGACCAAA	chr11:62285422-62285673(-)$1	251	137	164	13.4000
GUACACUUGUAAGUUCACAGGUUGUGG	chr6:87965684-87965973(+)$1	289	80	107	11.7569
GAACAGAGUCACCCCAGGCUCAAAGUC	chr22:22869717-22870019(-)$1	302	253	280	13.1283
GCUCUGUCUUGAACCAAAGAAUGUUCU	chr15:40917717-40917942(+)$1	225	125	152	12.8807
UGGGAAGGAUGAAGAAAUUCCAGAUAG	chr3:47165076-47165349(-)$1	273	81	108	11.6380
CAGGGUCACUAGAGAGAGAUAGGCCCG	chr8:94747343-94747680(-)$1	337	165	192	11.1631
AUUCUUGCCAAAAAGUUUAGUAAGGAU	chr1:203766802-203767104(+)$1	302	85	112	9.5475
AAUUAAAAUCAAUAAAGAUCUUUUGAU	chr12:32135093-32135387(+)$1	294	34	61	12.7943
agugugugguaauuuaaccaggagcag	chr17:58326922-58327203(-)$1	281	171	198	13.9927

#DB
..((((.(((......)))...)))).	chr15:40915824-40916130(+)$1	1	7	34	14.4173
((...(..(((....)))..)....))	chr1:46073041-46073268(+)$1	1	99	126	10.4173
..((((.(((......)))...)))).	chr15:40915618-40915916(+)$1	1	213	240	14.4173
((((((((((......)).))))))))	chr2:109380767-109381073(+)$1	1	18	45	13.2150
(...(..(((......)))..))))).	chr3:47950730-47950998(-)$1	1	93	120	15.5234
(.(((...((......))..)))))..	chr4:104067020-104067291(-)$1	1	89	116	12.8194
((...(((((......)))))....))	chr2:152320656-152320929(+)$1	1	167	194	13.4559
..(((..(((......))).)))....	chr3:37368361-37368680(+)$1	1	155	182	11.7144
((.(((((((......))))))).)))	chr1:39800072-39800355(+)$1	1	159	186	12.7332
(..((..(((......)))..))))))	chr3:37367159-37367385(+)$1	1	132	159	14.1422
(((((..(((......)))..))))).	chr5:112177766-112178081(+)$1	1	50	77	14.2819
((...(..(((....)))..)....))	chr1:46073068-46073296(+)$1	1	72	99	10.4173
(((...((((......))))...))).	chr2:109382613-109382880(+)$1	1	187	214	14.6711
.(((((((((......))))))))).)	chr8:94747038-94747354(-)$1	1	204	231	13.9629
(((.(..(((......)))..).)).)	chr8:124267583-124267823(-)$1	1	60	87	14.6042
(..(((((((......)))))..))..	chr8:94746655-94746889(-)$1	1	197	224	11.5660
(.(((.((((......))))....)))	chr1:203768747-203768965(+)$1	1	58	85	14.0111
.(((.(.(((...)))))))...))..	chr11:62286278-62286504(-)$1	1	82	109	10.5331
((((...(((......)))))))))))	chr15:40913962-40914228(+)$1	1	180	207	13.5596
((((((.(((......)))))))))))	chr1:39798462-39798740(+)$1	1	248	275	15.8209
.((((.((((......))).).)))).	chr11:62292324-62292588(-)$1	1	120	147	14.3230
(((....(((......)))....))))	chr7:91631469-91631715(+)$1	1	71	98	15.6443
(((.((((((......)))).))...)	chr3:15084401-15084659(-)$1	1	200	227	12.1439
((((.(((((......))).))..)))	chr4:435963-436286(-)$1	1	101	128	12.5229
(((.((((((......)))))).))))	chr8:30700685-30700961(-)$1	1	5	32	11.1409
((((((((((......)).))))))))	chr2:109380719-109380967(+)$1	1	66	93	13.2150
.((((..(((......)))..))))..	chr6:87969501-87969785(+)$1	1	164	191	14.4250
((.(((.(((......))).))).)))	chr16:89217319-89217620(+)$1	1	4	31	14.1878
(((((((((((.....)).))))))))	chr8:30704754-30705012(-)$1	1	116	143	9.7205
((((((((((......)))))))))).	chr3:37366040-37366267(+)$1	1	149	176	13.9320
((((((.(((......)))..))))))	chr11:62291278-62291538(-)$1	1	167	194	13.7783
(((((.((((......)))).))))).	chr1:39799611-39799914(+)$1	1	220	247	12.4766
.((..(.(((......))).)..)).)	chr11:62293793-62294035(-)$1	1	187	214	14.6294
((...(((((......)))))....))	chr2:152320574-152320853(+)$1	1	249	276	13.4559
((((((((.(......)..))))))))	chr1:40702857-40703137(+)$1	1	224	251	14.0732
.((((((((((.....)))))))))))	chr13:23911786-23912097(-)$1	1	234	261	10.3916
))))))((((......))))(((.(((	chr1:203767118-203767364(+)$1	1	114	141	12.7716
..(((..(((......)))..)))..)	chr11:5510007-5510292(-)$1	1	52	79	14.8452
)))(((((((......))).))))(((	chr2:109383620-109383910(+)$1	1	86	113	12.7202
.((((((((((.....))).)))))))	chr2:175436869-175437146(+)$1	1	125	152	10.0283
(((....(((......)))....))))	chr11:5424061-5424366(-)$1	1	222	249	15.1175
((.(..((((......))))..)))..	chr11:62285422-62285673(-)$1	1	137	164	13.4000
.(((((((((......))))).)))))	chr6:87965684-87965973(+)$1	1	80	107	11.7569
((...(((((......)))))....))	chr22:22869717-22870019(-)$1	1	253	280	13.1283
((....((((......))))..)))).	chr15:40917717-40917942(+)$1	1	125	152	12.8807
))))))((((......))))(((((((	chr3:47165076-47165349(-)$1	1	81	108	11.6380
))(((((.((......))...))))))	chr8:94747343-94747680(-)$1	1	165	192	11.1631
((((((((.(((...))).))))))))	chr1:203766802-203767104(+)$1	1	85	112	9.5475
.(((((((((......)))..))))))	chr12:32135093-32135387(+)$1	1	34	61	12.7943
(((((.((((......))))...))).	chr17:58326922-58327203(-)$1	1	171	198	13.9927

#PSSM
c : 0.14	d : 0.14	f : 0.14	[ : 0.12	e : 0.10	= : 0.08	! : 0.06	i : 0.06	b : 0.04	" : 0.04	% : 0.02	g : 0.02	& : 0.02	h : 0.02	
f : 0.16	c : 0.14	d : 0.12	! : 0.10	e : 0.10	= : 0.10	i : 0.08	b : 0.06	[ : 0.04	g : 0.04	" : 0.02	% : 0.02	h : 0.02	
c : 0.16	d : 0.12	" : 0.12	f : 0.12	e : 0.10	= : 0.10	i : 0.08	[ : 0.06	! : 0.04	b : 0.04	g : 0.04	# : 0.02	
" : 0.14	c : 0.14	d : 0.12	f : 0.10	= : 0.10	i : 0.08	g : 0.06	e : 0.06	[ : 0.06	# : 0.06	b : 0.04	! : 0.02	a : 0.02	
" : 0.14	d : 0.12	c : 0.12	= : 0.10	i : 0.08	f : 0.08	g : 0.06	b : 0.06	e : 0.06	# : 0.06	a : 0.04	[ : 0.04	! : 0.04	
! : 0.16	e : 0.12	= : 0.10	a : 0.08	i : 0.08	[ : 0.08	f : 0.08	d : 0.06	" : 0.06	g : 0.06	# : 0.06	b : 0.04	c : 0.02	
d : 0.19	! : 0.18	[ : 0.14	e : 0.12	i : 0.08	= : 0.08	" : 0.04	g : 0.04	# : 0.04	f : 0.04	a : 0.02	b : 0.02	
c : 0.42	d : 0.18	e : 0.10	i : 0.08	= : 0.08	! : 0.04	g : 0.04	" : 0.02	f : 0.02	[ : 0.02	
c : 0.48	d : 0.18	e : 0.10	b : 0.08	= : 0.06	[ : 0.04	g : 0.02	i : 0.02	f : 0.02	
c : 0.50	d : 0.18	b : 0.10	e : 0.10	= : 0.04	g : 0.02	i : 0.02	f : 0.02	a : 0.02	
o : 0.86	c : 0.08	l : 0.02	b : 0.02	= : 0.02	
o : 0.86	n : 0.06	m : 0.04	l : 0.02	c : 0.02	
o : 0.86	n : 0.06	m : 0.04	l : 0.04	
o : 0.86	n : 0.06	m : 0.04	c : 0.02	l : 0.02	
o : 0.86	n : 0.06	m : 0.04	c : 0.02	l : 0.02	
o : 0.86	c : 0.08	n : 0.06	
c : 0.48	d : 0.18	b : 0.10	e : 0.10	a : 0.04	= : 0.04	g : 0.02	i : 0.02	f : 0.02	
c : 0.50	d : 0.18	b : 0.10	e : 0.10	= : 0.04	g : 0.02	i : 0.02	f : 0.02	2 : 0.02	
c : 0.44	d : 0.18	e : 0.10	2 : 0.08	] : 0.08	= : 0.04	g : 0.02	i : 0.02	f : 0.02	3 : 0.02	
2 : 0.21	d : 0.18	] : 0.14	e : 0.10	= : 0.10	i : 0.08	3 : 0.06	f : 0.04	4 : 0.04	g : 0.02	c : 0.02	
2 : 0.19	3 : 0.12	e : 0.12	= : 0.10	a : 0.08	i : 0.08	c : 0.08	4 : 0.06	g : 0.04	f : 0.04	] : 0.04	b : 0.02	d : 0.02	
4 : 0.16	3 : 0.10	c : 0.10	= : 0.10	i : 0.08	e : 0.08	2 : 0.08	f : 0.08	b : 0.06	a : 0.04	g : 0.04	] : 0.04	d : 0.04	
d : 0.16	4 : 0.16	c : 0.10	= : 0.10	i : 0.08	e : 0.08	3 : 0.06	2 : 0.06	f : 0.06	g : 0.04	b : 0.04	] : 0.04	a : 0.02	
d : 0.18	4 : 0.12	b : 0.12	e : 0.10	= : 0.10	i : 0.08	c : 0.08	f : 0.08	] : 0.04	7 : 0.02	3 : 0.02	2 : 0.02	[ : 0.02	g : 0.02	
d : 0.19	b : 0.12	f : 0.12	4 : 0.10	e : 0.10	c : 0.10	= : 0.10	i : 0.08	7 : 0.02	3 : 0.02	2 : 0.02	g : 0.02	
d : 0.19	c : 0.18	f : 0.14	= : 0.10	3 : 0.08	e : 0.08	i : 0.06	] : 0.06	2 : 0.06	7 : 0.02	g : 0.02	
c : 0.16	f : 0.14	d : 0.10	2 : 0.08	5 : 0.06	i : 0.06	3 : 0.06	= : 0.06	] : 0.06	e : 0.06	4 : 0.02	7 : 0.02	a : 0.02	: : 0.02	h : 0.02	b : 0.02	g : 0.02	E : 0.02	

#score	652.1311856575124
#seq	50
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_transcript_m3_run2.txt

#BEAR
=========[===========[ee	chr8:128822309-128822552(+)$1	243	36	60	7.9493
b[ccc[cccmmmmccc22cccbbg	chr16:28875248-28875517(+)$1	269	18	42	9.8372
eeeee[cccmmmmccceeeee22h	chr6:41514934-41515155(+)$1	221	141	165	9.5570
cccccc[bbmmmmbb]ccc]ccc3	chr19:927600-927860(+)$1	260	178	202	10.5526
###bb[cccmmmmcccbbeeeee]	chr22:45608233-45608518(-)$1	285	63	87	9.6378
ggggggcccmmmmccc]ggggggg	chr13:41239156-41239436(-)$1	280	81	105	11.1935
!dddd!!bbmmmmbbdddd22ddd	chrX:70767484-70767723(+)$1	239	98	122	8.4313
eee[ccc[bblllbb]ccceeeee	chr22:37964458-37964720(+)$1	262	166	190	8.4870
iiiii!!ccclllccc22iiiiii	chr22:31672360-31672631(+)$1	271	43	67	9.7002
dddd[a[bbmmmmbb]a]dddd22	chr6:47276893-47277174(-)$1	281	40	64	9.1749
!a!!a[ccclllccc]a22a333e	chr19:19639793-19640105(+)$1	312	118	142	8.9729
ffffffcccmmmmccc333fffff	chr6:36646693-36646927(+)$1	234	165	189	9.8298
gggggg[annnnna]ggggggg]f	chr16:24551130-24551370(+)$1	240	48	72	7.4923
eedddd[bbmmmmbb]ddddgggg	chr16:81479929-81480174(+)$1	245	135	159	9.3529
eeeee[cccmmmmccc]eeeee]c	chr3:184098497-184098751(+)$1	254	4	28	10.4300
e!!bb[cccmmmmcccbb]eeeee	chr12:131356575-131356818(+)$1	243	80	104	10.1084
g!!a!!cccmmmmccc22a22ggg	chr12:122233385-122233637(-)$1	252	36	60	10.5549
a[ccc[ccclllccc]ccc]a]cc	chr15:78369842-78370059(-)$1	217	129	153	9.2873
ee[ffffffmmmmffffff]eeee	chr19:949087-949358(+)$1	271	236	260	8.6480
fffff[cccmmmmcccffffff33	chr2:25564308-25564553(-)$1	245	200	224	9.9412
iiiiiiiiimmmmiiiiiiiiicc	chr11:2154814-2155054(-)$1	240	91	115	11.0988
ee[ccc[bbmmmmbbccc]eeeee	chr17:44269847-44270106(-)$1	259	81	105	10.7547
d!!ccc[bbmmmmbbccc22dddd	chr3:197281820-197282099(-)$1	279	160	184	9.7732
ceeeee[abblllbb]a]eeeee2	chr17:36955687-36955938(-)$1	251	24	48	8.1166
ffffff[bbmmmmbb]ffffffcc	chr20:60593871-60594136(-)$1	265	94	118	9.5988
gggggggoooooogggggggeeee	chr17:7476142-7476469(+)$1	327	258	282	8.1914
e[ccc[cccmmmmccc]ccc22ee	chr16:75285542-75285784(-)$1	242	5	29	10.6486
bb[ccc[bbmmmmbbccc]bb]bb	chr1:182360594-182360836(-)$1	242	186	210	9.1020
b[a"""cccmmmmccc]a]bb]cc	chr16:22019708-22020014(+)$1	306	145	169	10.0770
eee[cccbbmmmmbb22ccceeee	chr11:637284-637535(+)$1	251	32	56	10.0784
iiiiiiiiimmmmiiiiiiiii::	chr2:61764370-61764597(-)$1	227	131	155	9.3704
ccc[a[cccooooooccc]a]ccc	chr3:9993789-9994053(+)$1	264	78	102	8.4471
=========lll==========dd	chr7:139477007-139477269(-)$1	262	169	193	10.2021
gggg[ddddmmmmdddd333gggg	chr2:191513652-191513915(+)$1	263	26	50	8.9780
gg[bb[cccmmmmccc]bb]gggg	chr19:956148-956394(+)$1	246	179	203	10.5195
=========mmmm==========:	chr7:66205739-66206003(+)$1	264	62	86	11.1249
ggg[bbcccmmmmccc]bb]gggg	chr19:798205-798437(+)$1	232	182	206	10.1006
iiiiiiiiooooooiiiiiiiii]	chr11:2159172-2159433(-)$1	261	79	103	9.2584
iiiiiiiiooooooiiiiiiiii:	chr19:42758804-42759063(-)$1	259	201	225	8.3921
=========nnnnn==========	chr9:113018461-113018723(-)$1	262	129	153	8.9457
ggggggg[bblllbb]ggggggg2	chr8:144679220-144679467(-)$1	247	163	187	8.9371
eeee[a[bbmmmmbb]a]eeeee]	chr19:55603813-55604059(-)$1	246	171	195	10.6398
iiiiiiiiimmmmiiiiiiiii::	chr16:11890469-11890704(-)$1	235	9	33	9.3704
=========mmmm===========	chr20:362587-362825(+)$1	238	174	198	11.9199
d[a[a[cccmmmmccc]a]a]ddd	chr21:16436710-16436947(-)$1	237	144	168	10.6270
eeee!!cccmmmmccc22eeeee:	chr3:171758039-171758338(+)$1	299	143	167	9.5852
=========mmmm==========:	chr17:62769865-62770114(-)$1	249	165	189	11.1249
eeeee[cccmmmmccceeeee22g	chr6:41514877-41515134(+)$1	257	198	222	9.7777
f[ccc[abbmmmmbb]a]cccfff	chrX:70766854-70767098(+)$1	244	10	34	10.4938
ffffff[bbmmmmbb]ffffffcc	chr1:57111102-57111379(+)$1	277	63	87	9.5988
ggaccc[bbmmmmbb]ccc]a]gg	chr21:33103706-33103961(-)$1	255	137	161	10.9158

#otherMatches

#Seq PSSM
GGAGAGGAGCAGGAGGGGGCUUCA	chr8:128822309-128822552(+)$1	243	36	60	7.9493
GUGGGACCGGAACCGGAACCCCCC	chr16:28875248-28875517(+)$1	269	18	42	9.8372
CCCAGACUUUCCAGAGCUGGGAAG	chr6:41514934-41515155(+)$1	221	141	165	9.5570
ACCCAGCGCUAUGGCCCUGAGGUC	chr19:927600-927860(+)$1	260	178	202	10.5526
UUAAGUCGGGUUCCCGCUGGGACU	chr22:45608233-45608518(-)$1	285	63	87	9.6378
CCCUCCCGGACCUCCGCGGGGGGA	chr13:41239156-41239436(-)$1	280	81	105	11.1935
AGUUUUGGCGCAAGCGAGCCUAUG	chrX:70767484-70767723(+)$1	239	98	122	8.4313
GGGAUGGCGGCCACCACUACCCAG	chr22:37964458-37964720(+)$1	262	166	190	8.4870
UAUUUAAAAAUGGUUUCCGGAUAG	chr22:31672360-31672631(+)$1	271	43	67	9.7002
CCGGGGGUGGCGGCGGCGCCGGAG	chr6:47276893-47277174(-)$1	281	40	64	9.1749
GAGACGGGCACAGCCGGGAUGGAG	chr19:19639793-19640105(+)$1	312	118	142	8.9729
CGCCCCUGGAAACCCAGCUGGGGC	chr6:36646693-36646927(+)$1	234	165	189	9.8298
GGGGUGGUGAGGAAGUGCUCCGAG	chr16:24551130-24551370(+)$1	240	48	72	7.4923
UGAACAGGAUGCUUUGUGUUUUGA	chr16:81479929-81480174(+)$1	245	135	159	9.3529
CUAUGCCUUGGACGAGACGUGGCA	chr3:184098497-184098751(+)$1	254	4	28	10.4300
GAGACGCUUCUGGAAGGUAUCGCG	chr12:131356575-131356818(+)$1	243	80	104	10.1084
AACCUCGGCCCCAGCCCUGCCUCC	chr12:122233385-122233637(-)$1	252	36	60	10.5549
cggccgcggagcccggggcgggUC	chr15:78369842-78370059(-)$1	217	129	153	9.2873
GGUGCUGAGUCAUCUCAGCCUCUG	chr19:949087-949358(+)$1	271	236	260	8.6480
accgccggccugcgccgcggugcc	chr2:25564308-25564553(-)$1	245	200	224	9.9412
CUUCAGCCUCCGGGGGCUGGGGUC	chr11:2154814-2155054(-)$1	240	91	115	11.0988
CCUGCUGCGGGUCCGGGCUGGGAG	chr17:44269847-44270106(-)$1	259	81	105	10.7547
CAGGCGGCGCACCCGCGCGAGGAC	chr3:197281820-197282099(-)$1	279	160	184	9.7732
UGCACCGCCcgggggcggggugcg	chr17:36955687-36955938(-)$1	251	24	48	8.1166
CUGUGAGCUGGGGAGGUUGCGGGG	chr20:60593871-60594136(-)$1	265	94	118	9.5988
GAGGUCUGUUACGAGGCCUCGACC	chr17:7476142-7476469(+)$1	327	258	282	8.1914
CGUGCAUUUGUUGGAGAGCGGUGU	chr16:75285542-75285784(-)$1	242	5	29	10.6486
CCCGCGUGCUUCCGCCGCUGGUGG	chr1:182360594-182360836(-)$1	242	186	210	9.1020
GGCGGAGGGGAGACCCGGGCCGCG	chr16:22019708-22020014(+)$1	306	145	169	10.0770
AGCACCGCGGACGCGGACGGGCUG	chr11:637284-637535(+)$1	251	32	56	10.0784
GUCAUUCGCGUGUGCGGGUGGCGG	chr2:61764370-61764597(-)$1	227	131	155	9.3704
GGCUCCGCGCCUUCCCGCAGUGUC	chr3:9993789-9994053(+)$1	264	78	102	8.4471
UUAUUUAUUUGCGAUAAAUGAAGG	chr7:139477007-139477269(-)$1	262	169	193	10.2021
CCCAAUGUGACAGCGCGggguggg	chr2:191513652-191513915(+)$1	263	26	50	8.9780
auuuauuaggcaacugcugugugc	chr19:956148-956394(+)$1	246	179	203	10.5195
CUGAGAGCUGCUCGGCUCUCAGCU	chr7:66205739-66206003(+)$1	264	62	86	11.1249
AGGCUGGAGAUGUUUCGCAUUCUU	chr19:798205-798437(+)$1	232	182	206	10.1006
ggcucggcggggcggcUGAGCCCG	chr11:2159172-2159433(-)$1	261	79	103	9.2584
CACUCCCGGGAUCACGGGGGUGGC	chr19:42758804-42759063(-)$1	259	201	225	8.3921
GUGCGGAGGCCGCCCCUCCGCAUC	chr9:113018461-113018723(-)$1	262	129	153	8.9457
GGCGUCCGCGGGACGGGGGCGCCG	chr8:144679220-144679467(-)$1	247	163	187	8.9371
CCGCAGGCAGCGGUGGCAGCGGGA	chr19:55603813-55604059(-)$1	246	171	195	10.6398
UUUUUGGUGAUUUCACUAAAAAAA	chr16:11890469-11890704(-)$1	235	9	33	9.3704
ugugugugugcgugCGCGCGCGCG	chr20:362587-362825(+)$1	238	174	198	11.9199
CAAGGGGGCGGCCGUCGCGUGGCC	chr21:16436710-16436947(-)$1	237	144	168	10.6270
GCCCCCCCGUCCCCGGCUGGGCCU	chr3:171758039-171758338(+)$1	299	143	167	9.5852
AGCUGGGGCAGCCGCCUCAGCUGU	chr17:62769865-62770114(-)$1	249	165	189	11.1249
CCCAGACUUUCCAGAGCUGGGAAG	chr6:41514877-41515134(+)$1	257	198	222	9.7777
GUCUAGGGGUGUUCUAUGUAGCGC	chrX:70766854-70767098(+)$1	244	10	34	10.4938
GCUCCGGACCGCUGUGCGGGGCUG	chr1:57111102-57111379(+)$1	277	63	87	9.5988
GGCCCGGGAGAGGUCGCGGCGACC	chr21:33103706-33103961(-)$1	255	137	161	10.9158

#DB
(((((((((.(((((((((((.((	chr8:128822309-128822552(+)$1	1	36	60	7.9493
(.(((.(((....)))..)))))(	chr16:28875248-28875517(+)$1	1	18	42	9.8372
(((((.(((....))))))))..)	chr6:41514934-41515155(+)$1	1	141	165	9.5570
((((((.((....)).))).))).	chr19:927600-927860(+)$1	1	178	202	10.5526
...((.(((....)))))))))).	chr22:45608233-45608518(-)$1	1	63	87	9.6378
(((((((((....))).)))))))	chr13:41239156-41239436(-)$1	1	81	105	11.1935
.((((..((....))))))..)))	chrX:70767484-70767723(+)$1	1	98	122	8.4313
(((.(((.((...)).))))))))	chr22:37964458-37964720(+)$1	1	166	190	8.4870
(((((..(((...)))..))))))	chr22:31672360-31672631(+)$1	1	43	67	9.7002
((((.(.((....)).).))))..	chr6:47276893-47277174(-)$1	1	40	64	9.1749
.(..(.(((...))).)..)...)	chr19:19639793-19640105(+)$1	1	118	142	8.9729
(((((((((....)))...)))))	chr6:36646693-36646927(+)$1	1	165	189	9.8298
((((((.(.....).))))))).)	chr16:24551130-24551370(+)$1	1	48	72	7.4923
))((((.((....)).))))((((	chr16:81479929-81480174(+)$1	1	135	159	9.3529
(((((.(((....))).))))).)	chr3:184098497-184098751(+)$1	1	4	28	10.4300
(..((.(((....))))).)))))	chr12:131356575-131356818(+)$1	1	80	104	10.1084
(..(..(((....)))..)..)))	chr12:122233385-122233637(-)$1	1	36	60	10.5549
(.(((.(((...))).))).).))	chr15:78369842-78370059(-)$1	1	129	153	9.2873
((.((((((....)))))).))))	chr19:949087-949358(+)$1	1	236	260	8.6480
(((((.(((....)))))))))..	chr2:25564308-25564553(-)$1	1	200	224	9.9412
(((((((((....)))))))))((	chr11:2154814-2155054(-)$1	1	91	115	11.0988
((.(((.((....))))).)))))	chr17:44269847-44270106(-)$1	1	81	105	10.7547
(..(((.((....)))))..))))	chr3:197281820-197282099(-)$1	1	160	184	9.7732
((((((.(((...)).).))))).	chr17:36955687-36955938(-)$1	1	24	48	8.1166
((((((.((....)).))))))((	chr20:60593871-60594136(-)$1	1	94	118	9.5988
(((((((......)))))))))))	chr17:7476142-7476469(+)$1	1	258	282	8.1914
(.(((.(((....))).)))..))	chr16:75285542-75285784(-)$1	1	5	29	10.6486
((.(((.((....))))).)).))	chr1:182360594-182360836(-)$1	1	186	210	9.1020
(.(...(((....))).).)).))	chr16:22019708-22020014(+)$1	1	145	169	10.0770
(((.(((((....))..)))))))	chr11:637284-637535(+)$1	1	32	56	10.0784
(((((((((....)))))))))..	chr2:61764370-61764597(-)$1	1	131	155	9.3704
(((.(.(((......))).).)))	chr3:9993789-9994053(+)$1	1	78	102	8.4471
(((((((((...))))))))))((	chr7:139477007-139477269(-)$1	1	169	193	10.2021
((((.((((....))))...))))	chr2:191513652-191513915(+)$1	1	26	50	8.9780
((.((.(((....))).)).))))	chr19:956148-956394(+)$1	1	179	203	10.5195
(((((((((....)))))))))).	chr7:66205739-66206003(+)$1	1	62	86	11.1249
(((.(((((....))).)).))))	chr19:798205-798437(+)$1	1	182	206	10.1006
((((((((......))))))))).	chr11:2159172-2159433(-)$1	1	79	103	9.2584
((((((((......))))))))).	chr19:42758804-42759063(-)$1	1	201	225	8.3921
(((((((((.....))))))))))	chr9:113018461-113018723(-)$1	1	129	153	8.9457
(((((((.((...)).))))))).	chr8:144679220-144679467(-)$1	1	163	187	8.9371
((((.(.((....)).).))))).	chr19:55603813-55604059(-)$1	1	171	195	10.6398
(((((((((....)))))))))..	chr16:11890469-11890704(-)$1	1	9	33	9.3704
(((((((((....)))))))))))	chr20:362587-362825(+)$1	1	174	198	11.9199
(.(.(.(((....))).).).)))	chr21:16436710-16436947(-)$1	1	144	168	10.6270
((((..(((....)))..))))).	chr3:171758039-171758338(+)$1	1	143	167	9.5852
(((((((((....)))))))))).	chr17:62769865-62770114(-)$1	1	165	189	11.1249
(((((.(((....))))))))..)	chr6:41514877-41515134(+)$1	1	198	222	9.7777
(.(((.(((....)).).))))))	chrX:70766854-70767098(+)$1	1	10	34	10.4938
((((((.((....)).))))))))	chr1:57111102-57111379(+)$1	1	63	87	9.5988
((((((.((....)).))).).))	chr21:33103706-33103961(-)$1	1	137	161	10.9158

#PSSM
e : 0.23	g : 0.17	= : 0.11	i : 0.11	f : 0.09	b : 0.05	c : 0.05	d : 0.05	! : 0.03	# : 0.01	a : 0.01	
e : 0.21	g : 0.15	= : 0.11	[ : 0.11	i : 0.11	f : 0.07	! : 0.05	c : 0.03	d : 0.03	# : 0.01	a : 0.01	b : 0.01	
e : 0.15	= : 0.11	c : 0.11	g : 0.11	i : 0.11	! : 0.07	f : 0.07	[ : 0.07	d : 0.05	a : 0.05	# : 0.01	
c : 0.17	= : 0.11	e : 0.11	i : 0.11	g : 0.09	[ : 0.09	f : 0.09	b : 0.05	d : 0.05	! : 0.01	a : 0.01	" : 0.01	
c : 0.21	= : 0.11	i : 0.11	f : 0.09	e : 0.07	b : 0.07	g : 0.07	[ : 0.05	a : 0.05	d : 0.03	! : 0.03	" : 0.01	
[ : 0.27	c : 0.13	= : 0.11	i : 0.09	g : 0.07	! : 0.07	f : 0.07	a : 0.03	d : 0.03	e : 0.01	" : 0.01	b : 0.01	
c : 0.41	[ : 0.23	= : 0.11	i : 0.09	! : 0.03	g : 0.03	f : 0.01	d : 0.01	a : 0.01	
c : 0.39	b : 0.25	= : 0.11	i : 0.09	[ : 0.03	a : 0.03	f : 0.01	o : 0.01	d : 0.01	
c : 0.39	b : 0.31	= : 0.11	i : 0.05	o : 0.05	n : 0.01	f : 0.01	d : 0.01	
m : 0.72	o : 0.07	b : 0.05	l : 0.05	n : 0.03	[ : 0.01	c : 0.01	
m : 0.72	l : 0.13	o : 0.07	n : 0.03	= : 0.01	
m : 0.72	l : 0.13	o : 0.07	n : 0.03	= : 0.01	
m : 0.72	l : 0.07	o : 0.07	= : 0.03	c : 0.03	n : 0.03	
c : 0.37	b : 0.31	= : 0.09	i : 0.05	o : 0.05	a : 0.01	f : 0.01	g : 0.01	d : 0.01	n : 0.01	
c : 0.37	b : 0.31	= : 0.11	i : 0.09	] : 0.01	f : 0.01	g : 0.01	o : 0.01	d : 0.01	
c : 0.41	] : 0.25	= : 0.11	i : 0.09	d : 0.03	g : 0.03	f : 0.01	2 : 0.01	
c : 0.15	] : 0.13	= : 0.11	2 : 0.09	a : 0.09	i : 0.09	f : 0.07	d : 0.05	g : 0.05	e : 0.03	b : 0.03	3 : 0.01	
c : 0.19	= : 0.11	2 : 0.09	i : 0.09	b : 0.07	g : 0.07	] : 0.07	f : 0.07	e : 0.05	d : 0.03	3 : 0.03	a : 0.03	
c : 0.15	e : 0.13	= : 0.11	i : 0.11	] : 0.11	g : 0.07	f : 0.07	d : 0.05	2 : 0.03	3 : 0.03	b : 0.03	a : 0.01	
e : 0.19	= : 0.11	] : 0.11	i : 0.11	c : 0.07	g : 0.07	f : 0.07	2 : 0.05	a : 0.05	d : 0.03	b : 0.03	3 : 0.01	
e : 0.25	g : 0.13	= : 0.11	i : 0.11	f : 0.07	c : 0.05	2 : 0.05	d : 0.03	a : 0.03	b : 0.03	] : 0.03	3 : 0.01	
e : 0.21	g : 0.15	i : 0.11	f : 0.09	= : 0.09	d : 0.07	] : 0.07	2 : 0.05	c : 0.03	[ : 0.01	b : 0.01	3 : 0.01	
e : 0.23	g : 0.15	c : 0.13	d : 0.07	= : 0.07	2 : 0.05	i : 0.05	b : 0.03	3 : 0.03	f : 0.03	] : 0.03	: : 0.03	
e : 0.17	g : 0.17	c : 0.13	: : 0.11	d : 0.07	] : 0.05	2 : 0.05	f : 0.05	3 : 0.03	= : 0.03	h : 0.01	i : 0.01	b : 0.01	

#score	494.9099090430569
#seq	51
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_transcript_m1_run2.txt

#BEAR
[bbccc"""bb[a[eeeeeooooooeeeeea]bb333cc	chr17:7477038-7477283(+)$1	245	48	87	12.0802
hhhhhccc[a"""ddddrrrrrrrrrdddd4444a]ccc	chr22:46687065-46687346(+)$1	281	192	231	12.9189
cdddda"""ccceeeeeqqqqqqqqeeeee]ccc4444a	chr16:89805659-89805922(-)$1	263	53	92	16.9407
dd!!eeeee!!ccc[aqqqqqqqqa]ccceeeee22ddd	chr2:27448756-27449033(+)$1	277	107	146	13.7109
Eggggggg[ccc!!cccqqqqqqqqccc333ccc22ggg	chrX:77380605-77380860(+)$1	255	15	54	18.3217
hhhhhhheeeee[a[bbqqqqqqqqbb]a22eeeee444	chr17:63555239-63555488(-)$1	249	152	191	14.4285
ccc[ccc[ccc[cccbbqqqqqqqqbb]cccccc22ccc	chr17:80397924-80398195(+)$1	271	82	121	16.0499
##eeeee"""ccc!!bbqqqqqqqqbb333ccc55555e	chr7:100137198-100137436(+)$1	238	59	98	13.5260
c!!ffffffeeeeecccqqqqqqqqccc]eeeee]ffff	chr17:79958325-79958547(+)$1	222	18	57	14.4022
eebbggggggg####bbqqqqqqqqbb4444ggggggg3	chr10:43891695-43891984(-)$1	289	71	110	16.1529
ccc=============aqqqqqqqqa]============	chr17:79962953-79963191(+)$1	238	118	157	17.8173
c[hhhhhhhh[eeeeeaqqqqqqqqa]eeeee333hhhh	chr20:37075927-37076186(+)$1	259	195	234	13.5971
gggg!!eeeee!!cccaooooooa]ccc333eeeeeggg	chr12:6495339-6495585(+)$1	246	79	118	12.9814
:dddd!!a!!bb[a[bbqqqqqqqqbb22a]bb22a22d	chr2:242611371-242611619(+)$1	248	198	237	14.5964
Eggggggg[ccc!!cccqqqqqqqqccc333ccc22ggg	chrX:77380550-77380805(+)$1	255	70	109	18.3217
fffff!!bb[a[eeeeeqqqqqqqqeeeee]a]bb]fff	chr8:134308748-134309025(-)$1	277	75	114	14.0398
ggggg[ccc####dddd[bboooooobb22dddd333cc	chr20:60629540-60629799(-)$1	259	2	41	11.6190
]cccccc[cccdddd[bbqqqqqqqqbb22dddd]ccc]	chr16:28847426-28847662(+)$1	236	192	231	13.3472
eeedddd"""ccc[bb[bboooooobb]bb]ccc333dd	chr16:8994388-8994653(-)$1	265	213	252	11.5103
fff:ggggggg!!ddddqqqqqqqqdddd22ggggggg:	chr3:50140331-50140591(+)$1	260	157	196	14.6865
gggggg[ccc"""eeeeeooooooeeeee22ccc]gggg	chr12:57038680-57038903(-)$1	223	52	91	13.5059
""gggggggccc!!ddddoooooodddd333ccc77777	chr14:24113854-24114095(+)$1	241	162	201	12.3885
!!ccc####ccc"""ddddnnnnndddd333ccc4444c	chr10:97388172-97388418(-)$1	246	198	237	12.3562
ccc!!ggggggg[a[cccpppppppccc]aggggggg22	chr6:43488491-43488750(+)$1	259	23	62	11.9900
"""dddd!!eeeee[bbqqqqqqqqbb]eeeee333ddd	chr12:71960627-71960880(+)$1	253	207	246	14.9901
bb[============a[aooooooa]a]===========	chr20:47895484-47895723(+)$1	239	136	175	13.9909
fffff"""eeeee[cccqqqqqqqqccc22eeeee4444	chr9:19378848-19379096(-)$1	248	28	67	16.0663
iiiiiiiii"""eeeeeooooooeeeee4444iiiiiii	chr21:45739459-45739769(+)$1	310	176	215	13.1600
e[gggggggbb"""cccqqqqqqqqccc22bb]gggggg	chr16:89590234-89590477(+)$1	243	147	186	16.3113
d!!eeeee$$$$$ddddqqqqqqqqdddd22eeeee22d	chr3:133472452-133472688(+)$1	236	79	118	14.7669
d[==========[ddddrrrrrrrrrdddd]========	chr17:7125541-7125806(+)$1	265	11	50	15.1389
eee[bb[==========qqqqqqqq==========bb22	chr3:53853339-53853615(-)$1	276	159	198	15.9713
dddd"""ggggggg[acccooooooccc]a]gggggggd	chr11:61111157-61111423(+)$1	266	134	173	12.8654
!ddddccc"""ddddrrrrrrrrrdddd333ccc4444d	chr2:97498062-97498325(+)$1	263	128	167	14.0625
b[a"""ccc[eeeeesssssssssseeeee]ccc333a]	chr1:19207637-19207886(-)$1	249	116	155	13.0310
iabb[eeeee"""cccrrrrrrrrrccc333eeeee]bb	chr3:133473161-133473430(+)$1	269	80	119	13.1413
:ggggggg!!a[eeeeeooooooeeeee]a22ggggggg	chr9:137262653-137262953(+)$1	300	80	119	11.8723
===========:::cccqqqqqqqqcccccc[ccc[eee	chr3:48471213-48471468(-)$1	255	176	215	12.8976
hhh[ccc"""bb!!eeeeeooooooeeeee22bb22ccc	chr14:23445657-23445913(-)$1	256	73	112	11.6626
oa]ddddgggggggcccqqqqqqqqccc22gggggggHH	chr19:2228265-2228507(+)$1	242	182	221	14.4370
::iiiiiiiii[a[ddddoooooodddd]a]iiiiiiii	chr3:186334056-186334313(+)$1	257	133	172	12.2771
b####iiiiiiiii[bbqqqqqqqqbb]iiiiiiiii33	chr13:113980077-113980362(-)$1	285	192	231	16.4957
d!!bb"""iiiiiiiiiqqqqqqqqiiiiiiiii333bb	chr21:44520556-44520811(-)$1	255	144	183	16.9599
:::ddddbb[ccc[cccqqqqqqqqccc]cccbb4444d	chr17:14284919-14285156(+)$1	237	21	60	13.1254
::eeeeegggggggcccqqqqqqqqccc]ggggggg777	chr19:1423132-1423384(+)$1	252	128	167	13.2747
eee[bb[==========qqqqqqqq==========bb22	chr3:53853294-53853539(-)$1	245	83	122	15.9713
:dddd!!ccc[bbddddqqqqqqqqdddd]bbccc22dd	chr11:61634375-61634656(+)$1	281	167	206	13.8853
cccccc!!dddd[a[ddddoooooodddda]ddddccc]	chr6:158464111-158464350(+)$1	239	45	84	11.4799
======"""cccddddqqqqqqqqdddd333ccc333==	chr11:72534161-72534420(+)$1	259	51	90	17.9695
:eeeee"""ccc[ddddrrrrrrrrrdddd]ccceeeee	chr12:103246644-103246899(-)$1	255	166	205	12.5013
:dddd####dddd[cccrrrrrrrrrccc]dddd22ddd	chr19:5933405-5933653(-)$1	248	135	174	12.0691
ff!!ffffffgggggggqqqqqqqqggggggg]ffffff	chr6:31498910-31499139(-)$1	229	106	145	13.4721
eeeeccc!!ddddeeeeeooooooeeeee]dddd333cc	chr17:53397801-53398084(+)$1	283	136	175	12.0577
ccc!!ggggggg[eeeeeooooooeeeee22ggggggg]	chr1:67891890-67892138(-)$1	248	72	111	13.2733
bb"""bb!!ccc!!aqqqqqqqqa22ccc22bb333bb]	chr14:24614890-24615199(-)$1	309	29	68	13.1713

#otherMatches

#Seq PSSM
ACAUCCGGGCAACGCGAGGGGGGGGCUUCGGCUGGAGGG	chr17:7477038-7477283(+)$1	245	48	87	12.0802
GGCCUUCUGCGGGGCCCAGUGGGGGAGGGCAGGGGGAGA	chr22:46687065-46687346(+)$1	281	192	231	12.9189
GGCUGGUCAGGGCUGGGCAGUGUUUCCCAGACCCCCAUC	chr16:89805659-89805922(-)$1	263	53	92	16.9407
CCAAGGUCUUUGAGAGUUGUAUGUCCCUCAGACCCAGGU	chr2:27448756-27449033(+)$1	277	107	146	13.7109
AACUUCUUCUAUGUCUCUUUAUUCUGGGUAAAUGUUAAG	chrX:77380605-77380860(+)$1	255	15	54	18.3217
GUGCAGGGCCGAGUGGGGAAAUAUACCGAAAUUGGUUUC	chr17:63555239-63555488(-)$1	249	152	191	14.4285
CAGCGGGACCCAUGGGCAGGGGCAGGCACCGGGGAACCC	chr17:80397924-80398195(+)$1	271	82	121	16.0499
ggcuccggggcgcgagggaagggggccgaggugaggggc	chr7:100137198-100137436(+)$1	238	59	98	13.5260
CGCAGAGGGCCCGGGGCCACAUGCCGCUGCUGGGUCCCU	chr17:79958325-79958547(+)$1	222	18	57	14.4022
CGCCUCCGUGGUAAGUCUAGAGCAUGAAAGUCCGCGGGC	chr10:43891695-43891984(-)$1	289	71	110	16.1529
GGCCCGCUGGGCAGAGCAGAACACGGCCUCUGCUCAGUG	chr17:79962953-79963191(+)$1	238	118	157	17.8173
GCGGCUAUCCUGGAGACAGAUGACAGCUCUCCCUUGGAU	chr20:37075927-37076186(+)$1	259	195	234	13.5971
GACUCACCACUUUCAGCCUCCCCGCCUGCCCAGUGGAGU	chr12:6495339-6495585(+)$1	246	79	118	12.9814
CAAGAUGCCUGAUGCGCUAUGUCCUGUUCCUUCUAGAUU	chr2:242611371-242611619(+)$1	248	198	237	14.5964
AACUUCUUCUAUGUCUCUUUAUUCUGGGUAAAUGUUAAG	chrX:77380550-77380805(+)$1	255	70	109	18.3217
ugugugugugugucuguguCUGGGAACGGAGAGAUUGCG	chr8:134308748-134309025(-)$1	277	75	114	14.0398
GGCACCUCCAAGGCUGGGCCAGCUUGGGAGCCAGAGAGG	chr20:60629540-60629799(-)$1	259	2	41	11.6190
GCCCGCCGACCUGCACCUGUCUGUGAAGUAUGUAGGGUG	chr16:28847426-28847662(+)$1	236	192	231	13.3472
UCUUGAUAAAGCCCUUGAUGAACUAAUGGAUGGUGACAU	chr16:8994388-8994653(-)$1	265	213	252	11.5103
AAUAACUAAUUACUUCUUUUCUUACAGAAAAAGUUGGUG	chr3:50140331-50140591(+)$1	260	157	196	14.6865
UCUUCUGAGUUUGCUGAAGCCACAUUUAGGUACUGAGAA	chr12:57038680-57038903(-)$1	223	52	91	13.5059
AUUUCUUCCCUUUGCCCAGUUUCAUGGGAAUGAGUCUCU	chr14:24113854-24114095(+)$1	241	162	201	12.3885
GAUGCAAAGCUUAUUGAUAUAUUUUAUCCCGGAGAUCAG	chr10:97388172-97388418(-)$1	246	198	237	12.3562
AUGGUAUUUGGGAUGCUGUUCAAGUUAGGACCUAAAUUA	chr6:43488491-43488750(+)$1	259	23	62	11.9900
CUCUUUGGUCCAGGCUCUCUGACAUGAUCCUGGUAACAA	chr12:71960627-71960880(+)$1	253	207	246	14.9901
CUUUAUUUGUUGGUUCACAGGUUAGAGCAGCCAGCGGGU	chr20:47895484-47895723(+)$1	239	136	175	13.9909
AAACUCACUGAACAGAGAAAACGUGCUUAAGUUCAAAUU	chr9:19378848-19379096(-)$1	248	28	67	16.0663
CAGGCGUCCUGGCGGCCGGGUCAGGCUGGAUUGGACGUC	chr21:45739459-45739769(+)$1	310	176	215	13.1600
UGUUUCUCCCUUUUGCUUCUCUGCCGGCUCAGAGGAGAG	chr16:89590234-89590477(+)$1	243	147	186	16.3113
UAUGGGUCAAAAGAGGGUAAGUUCUCCCUGGGACCCCAG	chr3:133472452-133472688(+)$1	236	79	118	14.7669
AGCCACAGGAGCCGUGAAGGAGAAGAUCACAGCUUUUGU	chr17:7125541-7125806(+)$1	265	11	50	15.1389
CUGCAGAGUGGGGGACACAGAGGCCUGUCCCCUGCCUUC	chr3:53853339-53853615(-)$1	276	159	198	15.9713
CAGCCGUGUCUAAGAGAGUUAUCUUGCUGCCCUUAGAUG	chr11:61111157-61111423(+)$1	266	134	173	12.8654
UAGCUGCCCCUUCCUGUCCCACAGAGGAUUUGGCACUUG	chr2:97498062-97498325(+)$1	263	128	167	14.0625
agaauauauauguugggagagggaauagcacauacaaug	chr1:19207637-19207886(-)$1	249	116	155	13.0310
CCUCUCCGCUCCCCUCCCUCCUCAAGAGUCCGGUGGUGA	chr3:133473161-133473430(+)$1	269	80	119	13.1413
GCUGCUGAGGGGCCAUCGCGGAAGGUGGGUGGUCAGCAG	chr9:137262653-137262953(+)$1	300	80	119	11.8723
CCCGGCUCUGGACGGGCGGGAAGAGGCCGGGACGCUGUU	chr3:48471213-48471468(-)$1	255	176	215	12.8976
ACCUGGACCUGGAAUUGGUUUCCAUACUGACCCCCUUCU	chr14:23445657-23445913(-)$1	256	73	112	11.6626
ACGGCCACAGGGCUCGGCAGAAGUUCCGGGGGUCCUGAG	chr19:2228265-2228507(+)$1	242	182	221	14.4370
AAGGGGAAGGGCAGCCAUCCUCACGUGGGUUUCUUUCUC	chr3:186334056-186334313(+)$1	257	133	172	12.2771
UCUCUGCAGACAGUGCUUCGGAUCUGGGACUGUUUGUUU	chr13:113980077-113980362(-)$1	285	192	231	16.4957
UUUUCCAUAAUAUAAAGUUGUUGCGUUUUGUAUUUCAGA	chr21:44520556-44520811(-)$1	255	144	183	16.9599
GAAGCUAUGCAUUACUUUUUGAACCAAGCAAUCAGAUUU	chr17:14284919-14285156(+)$1	237	21	60	13.1254
CCAUGUCGGUUACGCUGUUAAGUCUUAGUCGUAACUUAA	chr19:1423132-1423384(+)$1	252	128	167	13.2747
CUGCAGAGUGGGGGACACAGAGGCCUGUCCCCUGCCUUC	chr3:53853294-53853539(-)$1	245	83	122	15.9713
AGUCUAACCCACUAAUCAGUUCUUAGAUUCAGGGGAAGG	chr11:61634375-61634656(+)$1	281	167	206	13.8853
GCAUGCCCGCCCAGUACCUGGCGAGAGGUCAGGGCGCAU	chr6:158464111-158464350(+)$1	239	45	84	11.4799
CCCUCAACCCUUUCCCUCCUUCUUGGGAUCAGAGCUCUG	chr11:72534161-72534420(+)$1	259	51	90	17.9695
CCCAGCUUGCACUGGUUUCCGCCUCCGACCUGUGGCUGG	chr12:103246644-103246899(-)$1	255	166	205	12.5013
CUGUUGAUAUUUUGUCUUGUGCUUUUAGAGGAAAGGAGC	chr19:5933405-5933653(-)$1	248	135	174	12.0691
GAAAAAGACAGUUGAGAGAAGGGAAUCUCAACAUGUUUU	chr6:31498910-31499139(-)$1	229	106	145	13.4721
CUGGAGCCUGCCCGUGCCCUGGCUGGCACUGGGCUUUGC	chr17:53397801-53398084(+)$1	283	136	175	12.0577
GGUAGUGGAUUGGAAGAGAAGCAGCUUUUGACAGUCCAG	chr1:67891890-67892138(-)$1	248	72	111	13.2733
ggaauaucacaguccuaaccuucguucugccauuuacca	chr14:24614890-24615199(-)$1	309	29	68	13.1713

#DB
.(((((...((.(.(((((......)))))).))...))	chr17:7477038-7477283(+)$1	1	48	87	12.0802
((((((((.(...((((.........))))....).)))	chr22:46687065-46687346(+)$1	1	192	231	12.9189
((((((...((((((((........))))).)))....)	chr16:89805659-89805922(-)$1	1	53	92	16.9407
((..(((((..(((.(........).))))))))..)))	chr2:27448756-27449033(+)$1	1	107	146	13.7109
((((((((.(((..(((........)))...)))..)))	chrX:77380605-77380860(+)$1	1	15	54	18.3217
((((((((((((.(.((........)).)..)))))...	chr17:63555239-63555488(-)$1	1	152	191	14.4285
(((.(((.(((.(((((........)).))))))..)))	chr17:80397924-80398195(+)$1	1	82	121	16.0499
..(((((...(((..((........))...))).....)	chr7:100137198-100137436(+)$1	1	59	98	13.5260
(..((((((((((((((........))).))))).))))	chr17:79958325-79958547(+)$1	1	18	57	14.4022
(((((((((((....((........))....))))))).	chr10:43891695-43891984(-)$1	1	71	110	16.1529
)))((((((((((((((........).))))))))))))	chr17:79962953-79963191(+)$1	1	118	157	17.8173
(.((((((((.((((((........).)))))...))))	chr20:37075927-37076186(+)$1	1	195	234	13.5971
((((..(((((..((((......).)))...))))))))	chr12:6495339-6495585(+)$1	1	79	118	12.9814
.((((..(..((.(.((........))..).))..)..)	chr2:242611371-242611619(+)$1	1	198	237	14.5964
((((((((.(((..(((........)))...)))..)))	chrX:77380550-77380805(+)$1	1	70	109	18.3217
(((((..((.(.(((((........))))).).)).)))	chr8:134308748-134309025(-)$1	1	75	114	14.0398
(((((.(((....((((.((......))..))))...))	chr20:60629540-60629799(-)$1	1	2	41	11.6190
.)))(((.(((((((.((........))..)))).))).	chr16:28847426-28847662(+)$1	1	192	231	13.3472
)))((((...(((.((.((......)).)).)))...))	chr16:8994388-8994653(-)$1	1	213	252	11.5103
))).(((((((..((((........))))..))))))).	chr3:50140331-50140591(+)$1	1	157	196	14.6865
((((((.(((...(((((......)))))..))).))))	chr12:57038680-57038903(-)$1	1	52	91	13.5059
..((((((((((..((((......))))...))).....	chr14:24113854-24114095(+)$1	1	162	201	12.3885
..(((....(((...((((.....))))...)))....)	chr10:97388172-97388418(-)$1	1	198	237	12.3562
(((..(((((((.(.(((.......))).))))))))..	chr6:43488491-43488750(+)$1	1	23	62	11.9900
...((((..(((((.((........)).)))))...)))	chr12:71960627-71960880(+)$1	1	207	246	14.9901
((.(((((((((((((.(......).).)))))))))))	chr20:47895484-47895723(+)$1	1	136	175	13.9909
(((((...(((((.(((........)))..)))))....	chr9:19378848-19379096(-)$1	1	28	67	16.0663
(((((((((...(((((......)))))....)))))))	chr21:45739459-45739769(+)$1	1	176	215	13.1600
(.(((((((((...(((........)))..)).))))))	chr16:89590234-89590477(+)$1	1	147	186	16.3113
(..(((((.....((((........))))..)))))..)	chr3:133472452-133472688(+)$1	1	79	118	14.7669
(.((((((((((.((((.........)))).))))))))	chr17:7125541-7125806(+)$1	1	11	50	15.1389
(((.((.((((((((((........))))))))))))..	chr3:53853339-53853615(-)$1	1	159	198	15.9713
((((...(((((((.((((......))).).))))))))	chr11:61111157-61111423(+)$1	1	134	173	12.8654
.(((((((...((((.........))))...)))....)	chr2:97498062-97498325(+)$1	1	128	167	14.0625
(.(...(((.(((((..........))))).)))...).	chr1:19207637-19207886(-)$1	1	116	155	13.0310
((((.(((((...(((.........)))...))))).))	chr3:133473161-133473430(+)$1	1	80	119	13.1413
.(((((((..(.(((((......))))).)..)))))))	chr9:137262653-137262953(+)$1	1	80	119	11.8723
)))))))))))...(((........)))(((.(((.(((	chr3:48471213-48471468(-)$1	1	176	215	12.8976
(((.(((...((..(((((......)))))..))..)))	chr14:23445657-23445913(-)$1	1	73	112	11.6626
.).))))((((((((((........)))..)))))))))	chr19:2228265-2228507(+)$1	1	182	221	14.4370
..(((((((((.(.((((......)))).).))))))))	chr3:186334056-186334313(+)$1	1	133	172	12.2771
(....(((((((((.((........)).)))))))))..	chr13:113980077-113980362(-)$1	1	192	231	16.4957
(..((...(((((((((........)))))))))...))	chr21:44520556-44520811(-)$1	1	144	183	16.9599
...((((((.(((.(((........))).)))))....)	chr17:14284919-14285156(+)$1	1	21	60	13.1254
..(((((((((((((((........))).)))))))...	chr19:1423132-1423384(+)$1	1	128	167	13.2747
(((.((.((((((((((........))))))))))))..	chr3:53853294-53853539(-)$1	1	83	122	15.9713
.((((..(((.((((((........)))).)))))..))	chr11:61634375-61634656(+)$1	1	167	206	13.8853
((((((..((((.(.((((......))))).))))))).	chr6:158464111-158464350(+)$1	1	45	84	11.4799
((((((...(((((((........))))...)))...))	chr11:72534161-72534420(+)$1	1	51	90	17.9695
.(((((...(((.((((.........)))).))))))))	chr12:103246644-103246899(-)$1	1	166	205	12.5013
.((((....((((.(((.........))).))))..)))	chr19:5933405-5933653(-)$1	1	135	174	12.0691
((..(((((((((((((........))))))).))))))	chr6:31498910-31499139(-)$1	1	106	145	13.4721
))))(((..(((((((((......))))).))))...))	chr17:53397801-53398084(+)$1	1	136	175	12.0577
(((..(((((((.(((((......)))))..))))))).	chr1:67891890-67892138(-)$1	1	72	111	13.2733
((...((..(((..(........)..)))..))...)).	chr14:24614890-24615199(-)$1	1	29	68	13.1713

#PSSM
c : 0.14	: : 0.14	e : 0.10	d : 0.09	f : 0.07	b : 0.07	h : 0.05	g : 0.05	E : 0.03	" : 0.03	! : 0.03	i : 0.03	= : 0.03	[ : 0.01	# : 0.01	] : 0.01	o : 0.01	
d : 0.12	g : 0.10	c : 0.10	e : 0.10	! : 0.07	[ : 0.07	f : 0.07	b : 0.05	h : 0.05	: : 0.05	# : 0.03	" : 0.03	a : 0.03	= : 0.03	i : 0.01	
g : 0.14	c : 0.12	e : 0.12	d : 0.10	! : 0.09	h : 0.07	b : 0.05	f : 0.05	= : 0.05	" : 0.03	i : 0.03	[ : 0.01	a : 0.01	] : 0.01	# : 0.01	: : 0.01	
d : 0.18	g : 0.14	e : 0.09	= : 0.09	c : 0.07	! : 0.07	[ : 0.07	h : 0.05	f : 0.05	b : 0.05	i : 0.03	" : 0.03	: : 0.01	# : 0.01	
d : 0.16	g : 0.16	c : 0.12	e : 0.09	= : 0.09	f : 0.07	h : 0.05	! : 0.05	b : 0.05	" : 0.05	i : 0.03	[ : 0.01	# : 0.01	
g : 0.18	c : 0.14	e : 0.10	= : 0.09	! : 0.07	d : 0.07	" : 0.07	i : 0.05	b : 0.05	h : 0.03	f : 0.03	# : 0.03	a : 0.01	[ : 0.01	
g : 0.16	c : 0.14	" : 0.12	e : 0.10	= : 0.07	! : 0.07	d : 0.07	[ : 0.05	i : 0.05	h : 0.03	f : 0.03	# : 0.03	b : 0.01	
g : 0.21	" : 0.16	c : 0.10	= : 0.10	e : 0.09	! : 0.07	i : 0.05	[ : 0.03	f : 0.03	b : 0.03	# : 0.03	h : 0.01	a : 0.01	
g : 0.16	" : 0.14	c : 0.10	= : 0.10	e : 0.09	! : 0.09	i : 0.07	[ : 0.05	f : 0.03	b : 0.03	# : 0.03	h : 0.01	$ : 0.01	d : 0.01	
c : 0.21	g : 0.12	e : 0.10	= : 0.10	" : 0.09	! : 0.05	[ : 0.05	i : 0.05	d : 0.05	b : 0.03	a : 0.01	h : 0.01	# : 0.01	$ : 0.01	f : 0.01	
c : 0.23	g : 0.14	e : 0.10	= : 0.10	" : 0.09	b : 0.07	i : 0.05	d : 0.05	[ : 0.03	a : 0.03	! : 0.01	# : 0.01	$ : 0.01	
c : 0.21	e : 0.10	g : 0.10	[ : 0.09	" : 0.09	= : 0.09	d : 0.09	b : 0.05	# : 0.03	! : 0.03	i : 0.03	$ : 0.01	: : 0.01	
e : 0.16	! : 0.12	[ : 0.12	" : 0.09	c : 0.09	d : 0.09	= : 0.07	g : 0.07	a : 0.03	# : 0.03	i : 0.03	$ : 0.01	: : 0.01	b : 0.01	
e : 0.20	d : 0.18	[ : 0.10	! : 0.10	c : 0.07	a : 0.07	= : 0.07	g : 0.07	" : 0.03	i : 0.03	# : 0.01	: : 0.01	
c : 0.23	d : 0.21	e : 0.20	[ : 0.14	= : 0.07	! : 0.01	# : 0.01	b : 0.01	" : 0.01	i : 0.01	g : 0.01	a : 0.01	
c : 0.23	d : 0.21	e : 0.18	b : 0.14	a : 0.05	= : 0.05	[ : 0.01	r : 0.01	s : 0.01	i : 0.01	g : 0.01	q : 0.01	
c : 0.21	d : 0.20	e : 0.16	b : 0.14	q : 0.05	a : 0.05	[ : 0.03	= : 0.03	r : 0.03	s : 0.01	i : 0.01	g : 0.01	
q : 0.54	r : 0.10	e : 0.09	d : 0.07	o : 0.05	b : 0.03	c : 0.03	[ : 0.01	a : 0.01	s : 0.01	
q : 0.56	o : 0.16	r : 0.10	e : 0.03	b : 0.03	d : 0.03	p : 0.01	c : 0.01	s : 0.01	
q : 0.56	o : 0.25	r : 0.10	b : 0.01	n : 0.01	p : 0.01	s : 0.01	
q : 0.56	o : 0.27	r : 0.10	n : 0.01	p : 0.01	s : 0.01	
q : 0.56	o : 0.27	r : 0.10	n : 0.01	p : 0.01	s : 0.01	
q : 0.56	o : 0.27	r : 0.10	n : 0.01	p : 0.01	s : 0.01	
q : 0.54	o : 0.21	r : 0.10	a : 0.03	e : 0.03	n : 0.01	p : 0.01	s : 0.01	
q : 0.50	o : 0.10	r : 0.09	e : 0.09	d : 0.09	a : 0.03	] : 0.01	p : 0.01	s : 0.01	2 : 0.01	
c : 0.23	e : 0.18	d : 0.16	b : 0.14	r : 0.07	] : 0.03	a : 0.03	= : 0.03	o : 0.01	q : 0.01	i : 0.01	g : 0.01	2 : 0.01	
c : 0.29	d : 0.21	e : 0.18	b : 0.18	] : 0.03	= : 0.03	a : 0.01	i : 0.01	g : 0.01	
c : 0.29	d : 0.21	e : 0.20	] : 0.10	= : 0.05	b : 0.03	3 : 0.01	4 : 0.01	2 : 0.01	i : 0.01	g : 0.01	
e : 0.18	3 : 0.16	d : 0.12	] : 0.12	2 : 0.10	c : 0.09	= : 0.07	4 : 0.03	i : 0.03	a : 0.01	b : 0.01	g : 0.01	
2 : 0.20	e : 0.16	3 : 0.16	a : 0.10	= : 0.07	d : 0.05	c : 0.05	] : 0.05	4 : 0.03	i : 0.03	g : 0.03	b : 0.01	
] : 0.18	3 : 0.14	2 : 0.14	e : 0.09	c : 0.07	= : 0.07	d : 0.07	g : 0.07	4 : 0.05	b : 0.03	i : 0.03	a : 0.01	
c : 0.25	e : 0.16	g : 0.14	= : 0.09	d : 0.09	b : 0.07	i : 0.05	4 : 0.03	2 : 0.03	] : 0.01	a : 0.01	[ : 0.01	
c : 0.27	e : 0.14	g : 0.14	b : 0.09	= : 0.09	d : 0.09	i : 0.07	] : 0.05	4 : 0.01	3 : 0.01	
c : 0.25	g : 0.16	e : 0.12	= : 0.09	d : 0.09	b : 0.07	i : 0.07	3 : 0.05	4 : 0.01	5 : 0.01	2 : 0.01	f : 0.01	
3 : 0.18	g : 0.16	2 : 0.12	e : 0.10	= : 0.09	4 : 0.07	] : 0.05	i : 0.05	c : 0.03	a : 0.01	5 : 0.01	b : 0.01	7 : 0.01	d : 0.01	f : 0.01	
g : 0.18	3 : 0.16	2 : 0.12	4 : 0.09	e : 0.09	= : 0.05	i : 0.05	] : 0.03	f : 0.03	c : 0.03	b : 0.03	5 : 0.01	h : 0.01	a : 0.01	7 : 0.01	[ : 0.01	
g : 0.21	3 : 0.12	4 : 0.10	c : 0.09	d : 0.05	f : 0.05	= : 0.05	2 : 0.05	i : 0.05	b : 0.05	7 : 0.03	e : 0.03	5 : 0.01	h : 0.01	] : 0.01	
g : 0.18	c : 0.14	4 : 0.10	d : 0.09	2 : 0.09	= : 0.07	f : 0.05	b : 0.05	7 : 0.03	i : 0.03	e : 0.03	5 : 0.01	h : 0.01	a : 0.01	H : 0.01	3 : 0.01	
d : 0.18	c : 0.12	g : 0.10	] : 0.09	= : 0.07	e : 0.05	f : 0.05	2 : 0.05	4 : 0.03	3 : 0.03	7 : 0.03	i : 0.03	b : 0.03	a : 0.01	h : 0.01	: : 0.01	H : 0.01	

#score	773.6416391611161
#seq	55
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_transcript_m3_run2.txt

#BEAR
ggggggooooooggggg	chr13:92000371-92000627(+)$1	256	1	18	11.0273
b[ddddoooooodddd]	chr9:140675835-140676084(+)$1	249	6	23	10.3470
d!!cccooooooccc22	chr12:123869292-123869530(+)$1	238	144	161	11.1310
ddd[bboooooobbddd	chr21:39431118-39431361(-)$1	243	169	186	10.3486
dddcccooooooccc]d	chr6:15248211-15248478(+)$1	267	111	128	11.3278
ffffffoooooofffff	chr16:85645904-85646147(+)$1	243	39	56	10.8243
!!ddddoooooodddde	chr20:61484204-61484446(-)$1	242	6	23	10.5091
:eeeeeooooooeeeee	chr12:123993279-123993519(-)$1	240	75	92	10.0097
]cccbboooooobbeee	chr16:88536095-88536351(+)$1	256	160	177	10.4707
ffffffoooooofffff	chr19:41832049-41832320(-)$1	271	211	228	10.8243
[eeeeeooooooeeeee	chr6:158993841-158994106(+)$1	265	18	35	10.8994
[bbcccooooooccc]b	chr22:50007756-50007974(-)$1	218	119	136	10.6610
ccccccooooooccc]c	chr1:245026465-245026712(-)$1	247	100	117	11.5414
[eeeeeooooooeeeee	chr1:46768347-46768602(-)$1	255	220	237	10.8994
ffffffoooooofffff	chr8:9629583-9629847(+)$1	264	55	72	10.8243
beeeeeooooooeeeee	chr8:9629691-9629949(+)$1	258	42	59	10.7198
!a[cccooooooccc]a	chr8:38775489-38775758(+)$1	269	22	39	11.6359
dddd[aooooooa]ddd	chr22:50024755-50025022(-)$1	267	190	207	10.2928
eeddddoooooodddd5	chr20:35480303-35480552(-)$1	249	46	63	9.5610
eeddddooooooddddF	chrX:39951567-39951820(-)$1	253	209	226	10.0390
b!!cccooooooccc22	chrX:152954465-152954742(+)$1	277	6	23	11.0430
ddd[bboooooobbddd	chr19:13106687-13106927(+)$1	240	221	238	10.3486
dddabboooooobb]a]	chr12:133108166-133108454(+)$1	288	171	188	10.2300
$$$cccoooooocccff	chr16:87771813-87772078(-)$1	265	244	261	10.5116
ea[cccooooooccc]a	chr1:1690764-1691026(-)$1	262	10	27	11.5675
b[ddddoooooodddd]	chr19:47731965-47732289(-)$1	324	205	222	10.3470
ee[cccoooooocccee	chr9:140463435-140463747(-)$1	312	228	245	11.5850
Eeeeeeooooooeeeee	chr1:202777007-202777269(-)$1	262	213	230	10.0785
cc[cccooooooccc33	chr19:1413184-1413439(+)$1	255	225	242	11.6457
ddddbboooooobb]dd	chr7:1577326-1577614(+)$1	288	192	209	10.2201
ggggggooooooggggg	chr19:2425978-2426265(-)$1	287	224	241	11.0273
ffffffoooooofffff	chr16:88577284-88577529(+)$1	245	223	240	10.8243
ccc[bboooooobbccc	chr6:157731326-157731649(-)$1	323	47	64	10.6414
ggggggooooooggggg	chr19:576875-577113(+)$1	238	210	227	11.0273
Ceeeeeooooooeeeee	chr19:10563344-10563618(+)$1	274	240	257	9.9409
ffffffoooooofffff	chr7:106809415-106809700(+)$1	285	223	240	10.8243
[a[cccooooooccc]a	chr4:715636-715909(+)$1	273	68	85	11.6544
dd[cccooooooccc]d	chr1:1181410-1181631(-)$1	221	200	217	11.5096
ddd[bboooooobbddd	chr7:150798533-150798759(+)$1	226	188	205	10.3486
eeecccooooooccc22	chr14:76070455-76070677(+)$1	222	134	151	11.1092
:eeeeeooooooeeeee	chr7:73869042-73869328(+)$1	286	75	92	10.0097
ddddddoooooodddd]	chr11:66393214-66393480(+)$1	266	186	203	10.3527
ffff[aooooooa]fff	chr3:128216204-128216504(+)$1	300	186	203	10.6065
ffffffoooooofffff	chr9:136132931-136133205(-)$1	274	173	190	10.8243
ggggggooooooggggg	chr21:44395428-44395669(+)$1	241	160	177	11.0273
[eeeeeooooooeeeee	chr12:124953536-124953793(-)$1	257	171	188	10.8994
ccccccooooooccc]c	chr19:955050-955281(+)$1	231	93	110	11.5414
======oooooo=====	chr4:2365982-2366233(-)$1	251	56	73	11.0488
ffffffoooooofffff	chr1:1157627-1157864(-)$1	237	1	18	10.8243
b[ddddoooooodddd2	chr16:89360376-89360636(-)$1	260	109	126	10.1483
ccc[bboooooobb]cc	chr22:20105348-20105583(+)$1	235	149	166	10.5397
:eeeeeooooooeeeee	chr11:2152538-2152796(-)$1	258	80	97	10.0097
ee[ddddoooooodddd	chr22:49982726-49983002(-)$1	276	12	29	8.8450
!a[cccooooooccc]a	chr16:88588984-88589264(+)$1	280	141	158	11.6359
ccc[bboooooobb]cc	chr16:88961118-88961363(-)$1	245	117	134	10.5397
feeeeeooooooeeeee	chr20:61914246-61914492(+)$1	246	219	236	10.8575
dd[cccooooooccc]d	chr16:88589777-88590011(+)$1	234	209	226	11.5096
ggg[bboooooobb]gg	chr7:150784391-150784636(+)$1	245	78	95	10.7138
bb[cccooooooccc]b	chr12:133107250-133107511(+)$1	261	86	103	10.9736
eeeeeeooooooeeeee	chr7:5635562-5635809(+)$1	247	61	78	10.8125
fff[bboooooobb22f	chr16:89042884-89043140(-)$1	256	204	221	10.2020
ffffffoooooofffff	chr21:46902971-46903230(+)$1	259	154	171	10.8243
ffffffoooooofffff	chr2:145274981-145275216(-)$1	235	121	138	10.8243
ggggggooooooggggg	chr12:124951225-124951503(-)$1	278	113	130	11.0273
ffffffoooooofffff	chr8:144675878-144676137(-)$1	259	56	73	10.8243
cc[cccooooooccc]c	chr1:12656086-12656359(-)$1	273	81	98	11.7091

#otherMatches

#Seq PSSM
GCAGCCGCAUCUGGCUG	chr13:92000371-92000627(+)$1	256	1	18	11.0273
ugacgcugggaugugug	chr9:140675835-140676084(+)$1	249	6	23	10.3470
CCUCUGCAUACUUAGUU	chr12:123869292-123869530(+)$1	238	144	161	11.1310
gccucaaucuccugggc	chr21:39431118-39431361(-)$1	243	169	186	10.3486
GGAUCGUGUCUCCGAGU	chr6:15248211-15248478(+)$1	267	111	128	11.3278
UUCAGGACGCUCCCUGA	chr16:85645904-85646147(+)$1	243	39	56	10.8243
GACUGUGCUUCUGCGGA	chr20:61484204-61484446(-)$1	242	6	23	10.5091
AUUGuuuuuuuuagcaa	chr12:123993279-123993519(-)$1	240	75	92	10.0097
ACCCCCUAACGUGGGGU	chr16:88536095-88536351(+)$1	256	160	177	10.4707
GGCCAGUGCCUGUUGGC	chr19:41832049-41832320(-)$1	271	211	228	10.8243
GAAGUUGUGGAGGACUU	chr6:158993841-158994106(+)$1	265	18	35	10.8994
GCCUCUAGGAAAAGAUG	chr22:50007756-50007974(-)$1	218	119	136	10.6610
ggcgggagggagcccgg	chr1:245026465-245026712(-)$1	247	100	117	11.5414
CGGCCUAAGGCAAGGCC	chr1:46768347-46768602(-)$1	255	220	237	10.8994
ACAugggacucaucaug	chr8:9629583-9629847(+)$1	264	55	72	10.8243
cgugguuuucuuauuac	chr8:9629691-9629949(+)$1	258	42	59	10.7198
GCGGCAAGUUUCUGCGG	chr8:38775489-38775758(+)$1	269	22	39	11.6359
AGGCAGAGCAACCGGCC	chr22:50024755-50025022(-)$1	267	190	207	10.2928
CUGCCCGUCGGAGGGCU	chr20:35480303-35480552(-)$1	249	46	63	9.5610
GCGGCGUCGAUUUGCUG	chrX:39951567-39951820(-)$1	253	209	226	10.0390
CUCGCAGUCAUGUGCCU	chrX:152954465-152954742(+)$1	277	6	23	11.0430
AGCUGCGUCGUGGCGCU	chr19:13106687-13106927(+)$1	240	221	238	10.3486
CCUCCAGCCUAAUGAGA	chr12:133108166-133108454(+)$1	288	171	188	10.2300
UUCCGUUACUUUACGAU	chr16:87771813-87772078(-)$1	265	244	261	10.5116
UCCCUGAUAGUCCAGAG	chr1:1690764-1691026(-)$1	262	10	27	11.5675
UUGGGAAAGUUGUCCCC	chr19:47731965-47732289(-)$1	324	205	222	10.3470
GUUGUGGUUCAGUGCAC	chr9:140463435-140463747(-)$1	312	228	245	11.5850
UUCUCCAGGGUGGGAGA	chr1:202777007-202777269(-)$1	262	213	230	10.0785
UUCUUAUUUUAUUGAUU	chr19:1413184-1413439(+)$1	255	225	242	11.6457
GGUGCUGACCAAGGACA	chr7:1577326-1577614(+)$1	288	192	209	10.2201
CCGGGUAUAGACACCUG	chr19:2425978-2426265(-)$1	287	224	241	11.0273
CCAGUCACAGGAGGCUG	chr16:88577284-88577529(+)$1	245	223	240	10.8243
GGCACUAUGAUGAGGCU	chr6:157731326-157731649(-)$1	323	47	64	10.6414
CUGGCAGGCGAGUGCUA	chr19:576875-577113(+)$1	238	210	227	11.0273
AGUGCUGCAGUGAGCAC	chr19:10563344-10563618(+)$1	274	240	257	9.9409
UCUUUCAGUUAGGGAAG	chr7:106809415-106809700(+)$1	285	223	240	10.8243
GAGGUGGGUGGACAUGU	chr4:715636-715909(+)$1	273	68	85	11.6544
GUCCUGUGUAGCUAGCA	chr1:1181410-1181631(-)$1	221	200	217	11.5096
GCCAUAGUCCCAUAGGC	chr7:150798533-150798759(+)$1	226	188	205	10.3486
guacuuggaugggagaA	chr14:76070455-76070677(+)$1	222	134	151	11.1092
GGGACCACAAAGGGUUC	chr7:73869042-73869328(+)$1	286	75	92	10.0097
GCCCAAGUGUCAUUGGA	chr11:66393214-66393480(+)$1	266	186	203	10.3527
GGCGGGGUGGAACGUGC	chr3:128216204-128216504(+)$1	300	186	203	10.6065
GAAGCUGAGUGGAGUUU	chr9:136132931-136133205(-)$1	274	173	190	10.8243
CAGGGUCUGGGCGCCCU	chr21:44395428-44395669(+)$1	241	160	177	11.0273
cagcaugaugggaugcu	chr12:124953536-124953793(-)$1	257	171	188	10.8994
CAGUUCAACCCGGGAUC	chr19:955050-955281(+)$1	231	93	110	11.5414
UGCCAGCCUUUCCUGGC	chr4:2365982-2366233(-)$1	251	56	73	11.0488
AGGCUCUUCCUUGGGUC	chr1:1157627-1157864(-)$1	237	1	18	10.8243
GGAGGGAUGUGGCCCUG	chr16:89360376-89360636(-)$1	260	109	126	10.1483
GGCGGGUUUCCUCCGGC	chr22:20105348-20105583(+)$1	235	149	166	10.5397
cgcagcacacacguugc	chr11:2152538-2152796(-)$1	258	80	97	10.0097
GGAGCUCACAGAGGGGC	chr22:49982726-49983002(-)$1	276	12	29	8.8450
GGGCCCAGAGGAGGGAC	chr16:88588984-88589264(+)$1	280	141	158	11.6359
CGGCGCACACAGGCCCC	chr16:88961118-88961363(-)$1	245	117	134	10.5397
GCCGGCCACCUUGUUGG	chr20:61914246-61914492(+)$1	246	219	236	10.8575
GGCGAGGCUGUGCUCAC	chr16:88589777-88590011(+)$1	234	209	226	11.5096
UCAGCUGCGGGGAGGUG	chr7:150784391-150784636(+)$1	245	78	95	10.7138
gggaggggCUGGCCUGC	chr12:133107250-133107511(+)$1	261	86	103	10.9736
UGGCUCAGCUUGGAGUU	chr7:5635562-5635809(+)$1	247	61	78	10.8125
UGACUCACCUCAGAUAU	chr16:89042884-89043140(-)$1	256	204	221	10.2020
GGGCCCUGAGCUGGGCC	chr21:46902971-46903230(+)$1	259	154	171	10.8243
GGGCGCGGAUGGGUGCU	chr2:145274981-145275216(-)$1	235	121	138	10.8243
uuuuccagaagaggaag	chr12:124951225-124951503(-)$1	278	113	130	11.0273
GUCUCUGUUAGGAGAGA	chr8:144675878-144676137(-)$1	259	56	73	10.8243
GGGUGGGAGCUGCCAGC	chr1:12656086-12656359(-)$1	273	81	98	11.7091

#DB
((((((......)))))	chr13:92000371-92000627(+)$1	1	1	18	11.0273
(.((((......)))).	chr9:140675835-140676084(+)$1	1	6	23	10.3470
(..(((......)))..	chr12:123869292-123869530(+)$1	1	144	161	11.1310
(((.((......)))))	chr21:39431118-39431361(-)$1	1	169	186	10.3486
((((((......))).)	chr6:15248211-15248478(+)$1	1	111	128	11.3278
((((((......)))))	chr16:85645904-85646147(+)$1	1	39	56	10.8243
..((((......)))))	chr20:61484204-61484446(-)$1	1	6	23	10.5091
.(((((......)))))	chr12:123993279-123993519(-)$1	1	75	92	10.0097
.)))((......))(((	chr16:88536095-88536351(+)$1	1	160	177	10.4707
((((((......)))))	chr19:41832049-41832320(-)$1	1	211	228	10.8243
.(((((......)))))	chr6:158993841-158994106(+)$1	1	18	35	10.8994
.(((((......))).)	chr22:50007756-50007974(-)$1	1	119	136	10.6610
((((((......))).)	chr1:245026465-245026712(-)$1	1	100	117	11.5414
.(((((......)))))	chr1:46768347-46768602(-)$1	1	220	237	10.8994
((((((......)))))	chr8:9629583-9629847(+)$1	1	55	72	10.8243
)(((((......)))))	chr8:9629691-9629949(+)$1	1	42	59	10.7198
.(.(((......))).)	chr8:38775489-38775758(+)$1	1	22	39	11.6359
((((.(......).)))	chr22:50024755-50025022(-)$1	1	190	207	10.2928
((((((......)))).	chr20:35480303-35480552(-)$1	1	46	63	9.5610
))((((......)))))	chrX:39951567-39951820(-)$1	1	209	226	10.0390
(..(((......)))..	chrX:152954465-152954742(+)$1	1	6	23	11.0430
(((.((......)))))	chr19:13106687-13106927(+)$1	1	221	238	10.3486
((((((......)).).	chr12:133108166-133108454(+)$1	1	171	188	10.2300
...(((......)))))	chr16:87771813-87772078(-)$1	1	244	261	10.5116
((.(((......))).)	chr1:1690764-1691026(-)$1	1	10	27	11.5675
(.((((......)))).	chr19:47731965-47732289(-)$1	1	205	222	10.3470
((.(((......)))))	chr9:140463435-140463747(-)$1	1	228	245	11.5850
)(((((......)))))	chr1:202777007-202777269(-)$1	1	213	230	10.0785
((.(((......)))..	chr19:1413184-1413439(+)$1	1	225	242	11.6457
((((((......)).))	chr7:1577326-1577614(+)$1	1	192	209	10.2201
((((((......)))))	chr19:2425978-2426265(-)$1	1	224	241	11.0273
((((((......)))))	chr16:88577284-88577529(+)$1	1	223	240	10.8243
(((.((......)))))	chr6:157731326-157731649(-)$1	1	47	64	10.6414
((((((......)))))	chr19:576875-577113(+)$1	1	210	227	11.0273
)(((((......)))))	chr19:10563344-10563618(+)$1	1	240	257	9.9409
((((((......)))))	chr7:106809415-106809700(+)$1	1	223	240	10.8243
.(.(((......))).)	chr4:715636-715909(+)$1	1	68	85	11.6544
((.(((......))).)	chr1:1181410-1181631(-)$1	1	200	217	11.5096
(((.((......)))))	chr7:150798533-150798759(+)$1	1	188	205	10.3486
((((((......)))..	chr14:76070455-76070677(+)$1	1	134	151	11.1092
.(((((......)))))	chr7:73869042-73869328(+)$1	1	75	92	10.0097
((((((......)))).	chr11:66393214-66393480(+)$1	1	186	203	10.3527
((((.(......).)))	chr3:128216204-128216504(+)$1	1	186	203	10.6065
((((((......)))))	chr9:136132931-136133205(-)$1	1	173	190	10.8243
((((((......)))))	chr21:44395428-44395669(+)$1	1	160	177	11.0273
.(((((......)))))	chr12:124953536-124953793(-)$1	1	171	188	10.8994
((((((......))).)	chr19:955050-955281(+)$1	1	93	110	11.5414
((((((......)))))	chr4:2365982-2366233(-)$1	1	56	73	11.0488
((((((......)))))	chr1:1157627-1157864(-)$1	1	1	18	10.8243
(.((((......)))).	chr16:89360376-89360636(-)$1	1	109	126	10.1483
(((.((......)).))	chr22:20105348-20105583(+)$1	1	149	166	10.5397
.(((((......)))))	chr11:2152538-2152796(-)$1	1	80	97	10.0097
((.((((......))))	chr22:49982726-49983002(-)$1	1	12	29	8.8450
.(.(((......))).)	chr16:88588984-88589264(+)$1	1	141	158	11.6359
(((.((......)).))	chr16:88961118-88961363(-)$1	1	117	134	10.5397
)(((((......)))))	chr20:61914246-61914492(+)$1	1	219	236	10.8575
((.(((......))).)	chr16:88589777-88590011(+)$1	1	209	226	11.5096
(((.((......)).))	chr7:150784391-150784636(+)$1	1	78	95	10.7138
((.(((......))).)	chr12:133107250-133107511(+)$1	1	86	103	10.9736
)(((((......)))))	chr7:5635562-5635809(+)$1	1	61	78	10.8125
(((.((......))..)	chr16:89042884-89043140(-)$1	1	204	221	10.2020
((((((......)))))	chr21:46902971-46903230(+)$1	1	154	171	10.8243
((((((......)))))	chr2:145274981-145275216(-)$1	1	121	138	10.8243
((((((......)))))	chr12:124951225-124951503(-)$1	1	113	130	11.0273
((((((......)))))	chr8:144675878-144676137(-)$1	1	56	73	10.8243
((.(((......))).)	chr1:12656086-12656359(-)$1	1	81	98	11.7091

#PSSM
f : 0.19	d : 0.16	c : 0.10	e : 0.10	g : 0.09	b : 0.09	[ : 0.07	! : 0.04	: : 0.04	] : 0.01	$ : 0.01	E : 0.01	C : 0.01	= : 0.01	
e : 0.24	f : 0.18	d : 0.15	c : 0.12	g : 0.09	a : 0.06	[ : 0.04	! : 0.04	b : 0.03	$ : 0.01	= : 0.01	
d : 0.21	f : 0.18	e : 0.18	[ : 0.16	g : 0.09	c : 0.09	! : 0.03	b : 0.01	$ : 0.01	= : 0.01	
c : 0.28	f : 0.16	e : 0.16	d : 0.15	[ : 0.12	g : 0.07	a : 0.01	= : 0.01	
c : 0.27	b : 0.16	e : 0.16	f : 0.15	d : 0.12	g : 0.07	[ : 0.03	= : 0.01	
c : 0.27	b : 0.16	e : 0.16	f : 0.15	d : 0.12	g : 0.07	a : 0.03	= : 0.01	
o : 0.98	d : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.27	b : 0.16	e : 0.16	f : 0.15	d : 0.10	g : 0.07	a : 0.03	= : 0.01	o : 0.01	
c : 0.27	b : 0.16	e : 0.16	f : 0.15	d : 0.12	g : 0.07	] : 0.03	= : 0.01	
c : 0.28	d : 0.18	e : 0.18	f : 0.16	g : 0.07	] : 0.07	= : 0.01	2 : 0.01	
d : 0.19	e : 0.19	] : 0.18	f : 0.18	g : 0.09	2 : 0.06	c : 0.04	a : 0.01	3 : 0.01	= : 0.01	
e : 0.21	f : 0.19	d : 0.13	g : 0.09	c : 0.09	] : 0.06	2 : 0.06	a : 0.06	b : 0.03	5 : 0.01	F : 0.01	3 : 0.01	= : 0.01	

#score	709.5125927867267
#seq	66
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_transcript_m2_run1.txt

#BEAR
gg!!bb"""a[cccooooooccc]a333bb	chr4:56283598-56283904(+)$1	306	213	243	11.4658
ee============mmmm============	chr16:20696155-20696386(+)$1	231	195	225	15.1035
c[ccc####eeeeemmmmeeeee4444ccc	chr22:48203494-48203855(+)$1	361	60	90	11.6880
d[===========oooooo===========	chr6:36939486-36939784(-)$1	298	185	215	14.0058
gggggg!!ccc[bbmmmmbb]cccgggggg	chr21:15870287-15870553(-)$1	266	121	151	11.3997
iiiiiiiii!!ddddllldddd22iiiiii	chr19:55856928-55857203(+)$1	275	128	158	11.2097
===========aooooooa]==========	chr10:7400001-7400337(-)$1	336	121	151	13.7692
iiiiii!!ffffffmmmmffffff]iiiii	chr7:105180037-105180355(+)$1	318	119	149	12.4746
hhhhhhh####cccmmmmccc333hhhhhh	chr10:126784860-126785170(-)$1	310	199	229	11.3823
eeeee[ccc[cccooooooccc]ccc]eee	chr7:158725537-158725799(+)$1	262	12	42	10.0316
ggggggg"""bboooooobb333ggggggg	chr1:35646200-35646448(-)$1	248	12	42	11.2429
iiiiiiiiia[cccnnnnnccc]a]iiiii	chr21:35476760-35477070(+)$1	310	160	190	11.4812
ccc!!bb"""ddddmmmmdddd333bb]cc	chr6:88410487-88410757(-)$1	270	62	92	11.5544
dddccc[gggggggmmmmggggggg333cc	chr6:151308578-151308872(+)$1	294	75	105	12.2349
####ccc[ffffffmmmmffffff]ccccc	chr6:27096474-27096779(-)$1	305	121	151	10.9499
===========oooooo===========::	chr4:68376169-68376443(-)$1	274	0	30	11.1777
#cccddddffffffmmmmffffff333ddd	chr9:134079652-134079926(+)$1	274	167	197	9.6429
============oooooo============	chr11:14669474-14669764(+)$1	290	257	287	14.0971
!ccc!!a[ggggggglllggggggg]a22c	chr1:155945052-155945330(-)$1	278	92	122	10.7412
!!eeeee"""ddddmmmmdddd22eeeee3	chr21:34899123-34899412(-)$1	289	9	39	10.6946
ee!!ccc!!a!!bbmmmmbb22a22ccc22	chr5:10355106-10355381(+)$1	275	148	178	10.8891
iiiiii!!a[ddddoooooodddd]a]iii	chr3:37288668-37288963(+)$1	295	143	173	10.8467
iiiiiiiii[aaooooooa]a]iiiiiiii	chr3:151994315-151994648(+)$1	333	292	322	12.5166
ccc!!ccc[eeeeemmmmeeeee]ccc333	chr19:46701103-46701357(-)$1	254	101	131	11.6617
ffff"""ggggggglllggggggg333fff	chr1:35648245-35648532(-)$1	287	48	78	10.1471
fff"""bb[eeeeemmmmeeeee]bb333f	chr22:19440606-19440851(-)$1	245	70	100	10.0686
iiiiibb####cccmmmmccc4444bb]ii	chr5:43295586-43295879(-)$1	293	7	37	12.9913
]ccc==========nnnnn==========d	chr16:70584815-70585150(+)$1	335	201	231	11.8973
c]bb==========mmmm==========::	chr3:48754005-48754258(-)$1	253	114	144	12.1227
========####bbmmmmbb==========	chr1:16653347-16653627(-)$1	280	168	198	14.1436
ddd[a!!cccddddmmmmdddd]ccc22a]	chr2:96934643-96934931(+)$1	288	106	136	10.4321
gggggg[ccc[cccnnnnnccc]cccgggg	chr22:19840807-19841079(-)$1	272	79	109	10.1168
d"""eeeee!!cccmmmmccc333eeeee3	chr11:3071909-3072261(-)$1	352	192	222	12.0355
ddd[bb[gggggggmmmmggggggg]bb]d	chr22:20073330-20073574(+)$1	244	55	85	11.0899
!!iiiiiiiiiaooooooa]iiiiiiiii]	chr16:67205403-67205692(+)$1	289	153	183	12.8087
eeeee"""ffffffmmmmffffff4444ee	chr10:103545082-103545357(-)$1	275	157	187	10.7812
%%%===========mmmm===========3	chr11:65192492-65192731(+)$1	239	24	54	13.3219
dd:===========mmmm===========:	chr17:34151283-34151554(+)$1	271	106	136	12.9562
[eeeee[ggggggglllggggggg]eeeee	chr6:35386854-35387210(+)$1	356	242	272	9.7163
iiiiiii"""ddddmmmmddddiiiiiiii	chr21:46281688-46281952(-)$1	264	134	164	13.1801
E=============mmmm============	chr19:5716379-5716611(-)$1	232	12	42	14.3975
[a!!ccc####cccmmmmccc333ccc22a	chr16:57218388-57218677(-)$1	289	21	51	13.4262
f"""bb[ccc"""ammmma333ccc]bb33	chr19:1883805-1884093(-)$1	288	25	55	11.4742
cc!!dddd"""cccmmmmccc333dddd22	chrX:70761332-70761607(+)$1	275	36	66	11.9144
d[eeeee[ffffffmmmmffffff]eeeee	chr7:140397202-140397513(+)$1	311	258	288	9.9442
iiidddd[bb[cccmmmmcccbb]dddd22	chr22:19389278-19389529(-)$1	251	138	168	9.9980
c[eeeee####cccmmmmccc]eeeee]cc	chr19:10930255-10930527(+)$1	272	176	206	11.8175
dddd!!ccc!!cccmmmmccc4444ccc88	chr17:54974796-54975078(-)$1	282	117	147	11.2738
d[ccc"""ffffffmmmmffffff22ccc]	chr6:31595116-31595414(+)$1	298	164	194	11.1180
cc[a[a!!ggggggglllggggggg22a]a	chr3:10356455-10356738(-)$1	283	72	102	10.8215
####==========mmmm==========00	chr11:65270584-65270812(+)$1	228	125	155	13.9926
ceeeee[a[eeeeemmmmeeeee]a]eeee	chr19:54971360-54971586(+)$1	226	59	89	10.4108
b[bb[cccaeeeeemmmmeeeee]a]ccc]	chr1:29492028-29492342(-)$1	314	18	48	10.3269
:ggggggg"""cccmmmmccc333gggggg	chr1:161088100-161088509(+)$1	409	191	221	12.7662
dd[==============[==========[c	chr1:29224070-29224319(+)$1	249	34	64	11.3058

#otherMatches

#Seq PSSM
GAGACCAGUGGUUCAGAGGGGAGGUUUGGG	chr4:56283598-56283904(+)$1	306	213	243	11.4658
UCCCACAGGGCAGGAAGCCUUGCUUUGUGG	chr16:20696155-20696386(+)$1	231	195	225	15.1035
UGUGCAAAGGCUCUCGAGGGGGUGGGGGUA	chr22:48203494-48203855(+)$1	361	60	90	11.6880
CCUUCAAGAAGGAUGGCAUUCCUUCUUGAA	chr6:36939486-36939784(-)$1	298	185	215	14.0058
AGCCAUUAGUGCGAAAUGUCACACAUGGCU	chr21:15870287-15870553(-)$1	266	121	151	11.3997
GCUUAGGAGGAGCCUGUGGGGCAGCUCCUG	chr19:55856928-55857203(+)$1	275	128	158	11.2097
UGUUCUAGGGCCAUGCAGGUGUUCUAGGGC	chr10:7400001-7400337(-)$1	336	121	151	13.7692
Uugggagcuuuguagaaaugcagaaucuca	chr7:105180037-105180355(+)$1	318	119	149	12.4746
UGCAGAGAUUUUAUCACUAUGUUAUUUUGC	chr10:126784860-126785170(-)$1	310	199	229	11.3823
ggagggaggagccuagguuggccucugccu	chr7:158725537-158725799(+)$1	262	12	42	10.0316
GGUGUGGGGGAGAGGGAACUAAACUAUACU	chr1:35646200-35646448(-)$1	248	12	42	11.2429
UUAUUCUUGCCAGCAAAAAGCUAGCCAGGA	chr21:35476760-35477070(+)$1	310	160	190	11.4812
UUCAGACACGGCUGAUUUUAGUAUAGUGGG	chr6:88410487-88410757(-)$1	270	62	92	11.5544
accaugaguaguuuaccagaauuaccccca	chr6:151308578-151308872(+)$1	294	75	105	12.2349
ugaaguacuguucaauuuuggacguuauag	chr6:27096474-27096779(-)$1	305	121	151	10.9499
UCCAUAUAUAUGAAGAAAUGUAUAUGGAGU	chr4:68376169-68376443(-)$1	274	0	30	11.1777
agcuuugagggcuaucgauagccucuguca	chr9:134079652-134079926(+)$1	274	167	197	9.6429
ACUUUGUGUUUGACUAGGUAAAUACAAGGU	chr11:14669474-14669764(+)$1	290	257	287	14.0971
GCUUAGGGAAGUCACUGAGUGACUUGCAGG	chr1:155945052-155945330(-)$1	278	92	122	10.7412
GGGCCAGAACCAAGAUCCCUUGCAUUGGUA	chr21:34899123-34899412(-)$1	289	9	39	10.6946
auucugauugcaaguaauuucccuuucauu	chr5:10355106-10355381(+)$1	275	148	178	10.8891
GAAUGCCUAGGUCCUCUGCUGGAUGUUGCA	chr3:37288668-37288963(+)$1	295	143	173	10.8467
CAUUUUAUAGGGGUAGGACACAUAUAGAAU	chr3:151994315-151994648(+)$1	333	292	322	12.5166
GAGGGGAGGggccaggugugguugcucaca	chr19:46701103-46701357(-)$1	254	101	131	11.6617
ACAAGAGACUUUGACUAUUAAAGUAGAUUG	chr1:35648245-35648532(-)$1	287	48	78	10.1471
uagaaagccuagaagcaguucuguguagau	chr22:19440606-19440851(-)$1	245	70	100	10.0686
GUGGCCUGGAAGCCUUUGGGUAAGAGGAGC	chr5:43295586-43295879(-)$1	293	7	37	12.9913
GGUCGCUCACUUUACCUUUUGGAGUGAGCU	chr16:70584815-70585150(+)$1	335	201	231	11.8973
CAGCGCCUCAGGUACUGUUACCUGGGGUCG	chr3:48754005-48754258(-)$1	253	114	144	12.1227
uccugguugacaccuuuugggauuaggaaG	chr1:16653347-16653627(-)$1	280	168	198	14.1436
CUGGUGGGUGGCCUUCACAGGCACGCAAAG	chr2:96934643-96934931(+)$1	288	106	136	10.4321
GCCUCCGUUUGCAGAGAGACUGGGGAGGGG	chr22:19840807-19841079(-)$1	272	79	109	10.1168
CAGGGUCUAGAGGCGGGCGCCAUAUGGACA	chr11:3071909-3072261(-)$1	352	192	222	12.0355
ACGCGCCCGGGUCUCAGCGGACUUGUGCAU	chr22:20073330-20073574(+)$1	244	55	85	11.0899
UCAGGCUGGAGCAAGUAAGAUUCCAGUUUU	chr16:67205403-67205692(+)$1	289	153	183	12.8087
AGGGUUCAGGGACUGAUUGGUCCCAUUUGC	chr10:103545082-103545357(-)$1	275	157	187	10.7812
AGGGAAUUCUCUGGGGCUUUGGGGAAUUUA	chr11:65192492-65192731(+)$1	239	24	54	13.3219
UUAGAAUUGGCUAUGUUAGUAGUUAGUUUA	chr17:34151283-34151554(+)$1	271	106	136	12.9562
AUUUCCGAGUGUCCAAAGGGCACUGGGAAG	chr6:35386854-35387210(+)$1	356	242	272	9.7163
CAUGGUCCUUGCUACAGAUGGUGACCAUGC	chr21:46281688-46281952(-)$1	264	134	164	13.1801
CUUUUUUUUUUCUGGGAACAGAAAAAAAAA	chr19:5716379-5716611(-)$1	232	12	42	14.3975
AGUUGAUUAUCAGUCUUCACUUUCAUCUUC	chr16:57218388-57218677(-)$1	289	21	51	13.4262
UGAGGUGCAAAGGGUGGUUGGGUUGGGCAA	chr19:1883805-1884093(-)$1	288	25	55	11.4742
UAAGUUCCUUGGAUGAUAAUUGUUGGAGAG	chrX:70761332-70761607(+)$1	275	36	66	11.9144
ggggucgugauuccaagcgggauucuggcc	chr7:140397202-140397513(+)$1	311	258	288	9.9442
ccuguggcagcaguguggauucuaccaugg	chr22:19389278-19389529(-)$1	251	138	168	9.9980
ugggguaggaacccaggugggauacucagg	chr19:10930255-10930527(+)$1	272	176	206	11.8175
UCCCAGUGCAGAGAGAUGUCUAAGGGUAGG	chr17:54974796-54975078(-)$1	282	117	147	11.2738
UAUGCAUCAguaguccaagcuacucagcag	chr6:31595116-31595414(+)$1	298	164	194	11.1180
guaugcaaggcccugacacagggcccagga	chr3:10356455-10356738(-)$1	283	72	102	10.8215
UAUUUUUAAGAGCUGUGGAGUUCUUAAAUA	chr11:65270584-65270812(+)$1	228	125	155	13.9926
UCUGAGGACCUGGCUCGUGCUAGAUGCUCA	chr19:54971360-54971586(+)$1	226	59	89	10.4108
UGUUGGUGGGUGACCACGGUCACACGCAUG	chr1:29492028-29492342(-)$1	314	18	48	10.3269
ACUUUUGGACUGCGGAAACGUUUGUCAGAG	chr1:161088100-161088509(+)$1	409	191	221	12.7662
ggaagggaaggggaggggaggggagaggag	chr1:29224070-29224319(+)$1	249	34	64	11.3058

#DB
((..((...(.(((......))).)...))	chr4:56283598-56283904(+)$1	1	213	243	11.4658
))((((((((((((....))))))))))))	chr16:20696155-20696386(+)$1	1	195	225	15.1035
(.(((....(((((....)))))....)))	chr22:48203494-48203855(+)$1	1	60	90	11.6880
(.(((((((((((......)))))))))))	chr6:36939486-36939784(-)$1	1	185	215	14.0058
((((((..(((.((....)).)))))))))	chr21:15870287-15870553(-)$1	1	121	151	11.3997
(((((((((..((((...))))..))))))	chr19:55856928-55857203(+)$1	1	128	158	11.2097
((((((((((((......).))))))))))	chr10:7400001-7400337(-)$1	1	121	151	13.7692
((((((..((((((....)))))).)))))	chr7:105180037-105180355(+)$1	1	119	149	12.4746
(((((((....(((....)))...))))))	chr10:126784860-126785170(-)$1	1	199	229	11.3823
(((((.(((.(((......))).))).)))	chr7:158725537-158725799(+)$1	1	12	42	10.0316
(((((((...((......))...)))))))	chr1:35646200-35646448(-)$1	1	12	42	11.2429
((((((((((.(((.....))).).)))))	chr21:35476760-35477070(+)$1	1	160	190	11.4812
(((..((...((((....))))...)).))	chr6:88410487-88410757(-)$1	1	62	92	11.5544
((((((.(((((((....)))))))...))	chr6:151308578-151308872(+)$1	1	75	105	12.2349
....(((.((((((....)))))).)))))	chr6:27096474-27096779(-)$1	1	121	151	10.9499
(((((((((((......)))))))))))..	chr4:68376169-68376443(-)$1	1	0	30	11.1777
.(((((((((((((....))))))...)))	chr9:134079652-134079926(+)$1	1	167	197	9.6429
((((((((((((......))))))))))))	chr11:14669474-14669764(+)$1	1	257	287	14.0971
.(((..(.(((((((...))))))).)..)	chr1:155945052-155945330(-)$1	1	92	122	10.7412
..(((((...((((....))))..))))).	chr21:34899123-34899412(-)$1	1	9	39	10.6946
((..(((..(..((....))..)..)))..	chr5:10355106-10355381(+)$1	1	148	178	10.8891
((((((..(.((((......)))).).)))	chr3:37288668-37288963(+)$1	1	143	173	10.8467
(((((((((.((......).).))))))))	chr3:151994315-151994648(+)$1	1	292	322	12.5166
(((..(((.(((((....))))).)))...	chr19:46701103-46701357(-)$1	1	101	131	11.6617
((((...(((((((...)))))))...)))	chr1:35648245-35648532(-)$1	1	48	78	10.1471
(((...((.(((((....))))).))...)	chr22:19440606-19440851(-)$1	1	70	100	10.0686
(((((((....(((....)))....)).))	chr5:43295586-43295879(-)$1	1	7	37	12.9913
.)))((((((((((.....))))))))))(	chr16:70584815-70585150(+)$1	1	201	231	11.8973
).))((((((((((....))))))))))..	chr3:48754005-48754258(-)$1	1	114	144	12.1227
((((((((....((....))))))))))))	chr1:16653347-16653627(-)$1	1	168	198	14.1436
(((.(..(((((((....)))).)))..).	chr2:96934643-96934931(+)$1	1	106	136	10.4321
((((((.(((.(((.....))).)))))))	chr22:19840807-19841079(-)$1	1	79	109	10.1168
(...(((((..(((....)))...))))).	chr11:3071909-3072261(-)$1	1	192	222	12.0355
(((.((.(((((((....))))))).)).)	chr22:20073330-20073574(+)$1	1	55	85	11.0899
..((((((((((......).))))))))).	chr16:67205403-67205692(+)$1	1	153	183	12.8087
(((((...((((((....))))))....))	chr10:103545082-103545357(-)$1	1	157	187	10.7812
...(((((((((((....))))))))))).	chr11:65192492-65192731(+)$1	1	24	54	13.3219
)).(((((((((((....))))))))))).	chr17:34151283-34151554(+)$1	1	106	136	12.9562
.(((((.(((((((...))))))).)))))	chr6:35386854-35387210(+)$1	1	242	272	9.7163
(((((((...((((....))))))))))))	chr21:46281688-46281952(-)$1	1	134	164	13.1801
((((((((((((((....))))))))))))	chr19:5716379-5716611(-)$1	1	12	42	14.3975
.(..(((....(((....)))...)))..)	chr16:57218388-57218677(-)$1	1	21	51	13.4262
(...((.(((...(....)...))).))..	chr19:1883805-1884093(-)$1	1	25	55	11.4742
((..((((...(((....)))...))))..	chrX:70761332-70761607(+)$1	1	36	66	11.9144
(.(((((.((((((....)))))).)))))	chr7:140397202-140397513(+)$1	1	258	288	9.9442
(((((((.((.(((....))))).))))..	chr22:19389278-19389529(-)$1	1	138	168	9.9980
(.(((((....(((....))).))))).))	chr19:10930255-10930527(+)$1	1	176	206	11.8175
((((..(((..(((....)))....)))..	chr17:54974796-54975078(-)$1	1	117	147	11.2738
(.(((...((((((....))))))..))).	chr6:31595116-31595414(+)$1	1	164	194	11.1180
((.(.(..(((((((...)))))))..).)	chr3:10356455-10356738(-)$1	1	72	102	10.8215
....((((((((((....))))))))))..	chr11:65270584-65270812(+)$1	1	125	155	13.9926
((((((.(.(((((....))))).).))))	chr19:54971360-54971586(+)$1	1	59	89	10.4108
(.((.(((((((((....))))).).))).	chr1:29492028-29492342(-)$1	1	18	48	10.3269
.(((((((...(((....)))...))))))	chr1:161088100-161088509(+)$1	1	191	221	12.7662
((.((((((((((((((.((((((((((.(	chr1:29224070-29224319(+)$1	1	34	64	11.3058

#PSSM
d : 0.18	c : 0.14	i : 0.14	g : 0.07	e : 0.07	= : 0.07	# : 0.05	! : 0.05	f : 0.05	[ : 0.03	h : 0.01	] : 0.01	% : 0.01	E : 0.01	b : 0.01	: : 0.01	
i : 0.14	c : 0.12	e : 0.10	[ : 0.10	d : 0.10	g : 0.09	= : 0.09	# : 0.03	! : 0.03	f : 0.03	" : 0.03	h : 0.01	] : 0.01	% : 0.01	a : 0.01	
i : 0.16	= : 0.12	c : 0.12	e : 0.12	! : 0.07	g : 0.07	d : 0.07	# : 0.03	f : 0.03	b : 0.03	" : 0.03	[ : 0.03	h : 0.01	% : 0.01	: : 0.01	
= : 0.18	i : 0.14	e : 0.12	! : 0.10	c : 0.10	g : 0.07	" : 0.05	# : 0.03	b : 0.03	[ : 0.03	d : 0.03	h : 0.01	f : 0.01	a : 0.01	
= : 0.23	i : 0.14	e : 0.14	c : 0.10	g : 0.07	! : 0.07	b : 0.05	d : 0.05	" : 0.03	[ : 0.03	h : 0.01	a : 0.01	
= : 0.23	i : 0.12	c : 0.10	e : 0.10	b : 0.09	g : 0.07	" : 0.07	d : 0.05	! : 0.05	# : 0.01	h : 0.01	[ : 0.01	a : 0.01	
= : 0.23	c : 0.12	[ : 0.10	! : 0.09	i : 0.09	" : 0.07	e : 0.07	b : 0.05	d : 0.05	g : 0.03	# : 0.01	h : 0.01	a : 0.01	
= : 0.23	" : 0.12	c : 0.12	# : 0.09	! : 0.09	g : 0.09	i : 0.07	[ : 0.07	d : 0.03	b : 0.01	e : 0.01	a : 0.01	
= : 0.21	" : 0.12	# : 0.10	c : 0.10	f : 0.10	g : 0.10	i : 0.07	[ : 0.05	a : 0.03	! : 0.01	e : 0.01	b : 0.01	
= : 0.21	f : 0.10	" : 0.10	g : 0.10	e : 0.09	# : 0.09	c : 0.07	a : 0.05	! : 0.05	[ : 0.05	i : 0.01	b : 0.01	
= : 0.21	f : 0.10	g : 0.10	e : 0.09	# : 0.09	d : 0.09	[ : 0.07	! : 0.07	" : 0.05	c : 0.03	b : 0.01	a : 0.01	i : 0.01	
c : 0.23	= : 0.18	d : 0.10	f : 0.10	g : 0.10	e : 0.09	a : 0.05	[ : 0.01	b : 0.01	o : 0.01	! : 0.01	# : 0.01	" : 0.01	
c : 0.23	= : 0.16	d : 0.10	o : 0.10	f : 0.10	g : 0.10	e : 0.09	b : 0.05	" : 0.01	
c : 0.21	= : 0.14	o : 0.14	d : 0.10	f : 0.10	g : 0.10	e : 0.09	b : 0.05	a : 0.01	
m : 0.65	o : 0.18	n : 0.05	g : 0.03	l : 0.03	d : 0.01	= : 0.01	
m : 0.65	o : 0.18	l : 0.09	n : 0.05	= : 0.01	
m : 0.65	o : 0.18	l : 0.09	n : 0.05	= : 0.01	
m : 0.65	o : 0.16	l : 0.05	n : 0.05	g : 0.03	= : 0.01	[ : 0.01	
= : 0.16	c : 0.16	f : 0.10	g : 0.10	e : 0.09	d : 0.09	o : 0.07	b : 0.07	a : 0.07	n : 0.05	
c : 0.21	= : 0.20	f : 0.10	g : 0.10	e : 0.09	d : 0.09	b : 0.07	] : 0.05	o : 0.03	3 : 0.01	
c : 0.23	= : 0.23	d : 0.10	f : 0.10	g : 0.10	e : 0.09	3 : 0.03	] : 0.01	2 : 0.01	a : 0.01	i : 0.01	
= : 0.23	3 : 0.12	d : 0.10	f : 0.10	g : 0.10	c : 0.09	e : 0.09	] : 0.03	4 : 0.03	2 : 0.01	i : 0.01	b : 0.01	
= : 0.23	3 : 0.12	e : 0.10	f : 0.10	g : 0.10	] : 0.07	c : 0.05	i : 0.05	2 : 0.03	4 : 0.03	a : 0.01	d : 0.01	b : 0.01	
= : 0.23	g : 0.12	] : 0.10	f : 0.10	3 : 0.10	c : 0.09	4 : 0.05	2 : 0.05	i : 0.05	a : 0.01	d : 0.01	e : 0.01	
= : 0.23	g : 0.12	] : 0.10	c : 0.10	4 : 0.07	i : 0.07	a : 0.05	3 : 0.05	e : 0.05	2 : 0.03	d : 0.03	h : 0.01	b : 0.01	
= : 0.23	c : 0.14	i : 0.10	] : 0.09	e : 0.09	3 : 0.07	g : 0.05	b : 0.05	4 : 0.03	d : 0.03	2 : 0.03	h : 0.01	a : 0.01	
= : 0.23	c : 0.12	i : 0.10	e : 0.10	3 : 0.09	g : 0.07	b : 0.07	4 : 0.03	] : 0.03	2 : 0.03	d : 0.03	h : 0.01	a : 0.01	
= : 0.23	i : 0.12	c : 0.10	e : 0.10	3 : 0.07	g : 0.07	] : 0.05	d : 0.05	2 : 0.05	b : 0.03	h : 0.01	f : 0.01	4 : 0.01	a : 0.01	
= : 0.16	i : 0.14	c : 0.12	e : 0.12	2 : 0.09	g : 0.07	3 : 0.05	: : 0.03	] : 0.03	b : 0.01	h : 0.01	d : 0.01	f : 0.01	a : 0.01	8 : 0.01	0 : 0.01	[ : 0.01	
c : 0.12	i : 0.12	= : 0.10	e : 0.09	3 : 0.09	g : 0.07	] : 0.07	: : 0.05	d : 0.05	2 : 0.05	f : 0.03	a : 0.03	b : 0.01	h : 0.01	8 : 0.01	0 : 0.01	

#score	645.0610290529761
#seq	55
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_CDS_m3_run1.txt

#BEAR
eeeeemmmmeeeee	chr2:27884128-27884388(-)$1	260	190	204	11.8312
eeeeeooooooeee	chr8:145533354-145533590(+)$1	236	192	206	10.0375
eeeeeooooooeee	chr11:18426901-18427223(+)$1	322	23	37	10.0375
eeeeemmmmeeeee	chr11:18425140-18425430(+)$1	290	6	20	11.8312
eeeeemmmmeeeee	chr8:48855677-48855989(-)$1	312	283	297	11.8312
eeeeemmmmeeeee	chr6:31508797-31509032(-)$1	235	168	182	11.8312
eeeeemmmmeeeee	chr11:18425230-18425459(+)$1	229	180	194	11.8312
eeeeemmmmeeeee	chr11:5289615-5289922(-)$1	307	239	253	11.8312

#otherMatches

#Seq PSSM
GCUCCCACGGGAGU	chr2:27884128-27884388(-)$1	260	190	204	11.8312
GGAGUGCAUGGACU	chr8:145533354-145533590(+)$1	236	192	206	10.0375
GAAAACUUUGUUUU	chr11:18426901-18427223(+)$1	322	23	37	10.0375
UCUUCCUCCGAAGA	chr11:18425140-18425430(+)$1	290	6	20	11.8312
GCAUGCAUGCAUGU	chr8:48855677-48855989(-)$1	312	283	297	11.8312
UCCAUAACGGUGGG	chr6:31508797-31509032(-)$1	235	168	182	11.8312
UUUAAAAGGUUAAA	chr11:18425230-18425459(+)$1	229	180	194	11.8312
GCAGGUGUUCCUGU	chr11:5289615-5289922(-)$1	307	239	253	11.8312

#DB
(((((....)))))	chr2:27884128-27884388(-)$1	1	190	204	11.8312
(((((......)))	chr8:145533354-145533590(+)$1	1	192	206	10.0375
(((((......)))	chr11:18426901-18427223(+)$1	1	23	37	10.0375
(((((....)))))	chr11:18425140-18425430(+)$1	1	6	20	11.8312
(((((....)))))	chr8:48855677-48855989(-)$1	1	283	297	11.8312
(((((....)))))	chr6:31508797-31509032(-)$1	1	168	182	11.8312
(((((....)))))	chr11:18425230-18425459(+)$1	1	180	194	11.8312
(((((....)))))	chr11:5289615-5289922(-)$1	1	239	253	11.8312

#PSSM
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
m : 0.75	o : 0.25	
m : 0.75	o : 0.25	
m : 0.75	o : 0.25	
m : 0.75	o : 0.25	
e : 0.75	o : 0.25	
e : 0.75	o : 0.25	
e : 1.00	
e : 1.00	
e : 1.00	

#score	91.0627897535
#seq	8
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_UTR_m1_run1.txt

#BEAR
ggggxxxxxxxxxxxxxxxggggg	chr9:34635254-34635579(-)$1	325	225	249	20.5242
&bb^^^^^^^^^^^^^^^^^^bb8	chr10:102760893-102761175(+)$1	282	70	94	23.5410
e^^^^^^^^^^^^^^^^^^^^^ee	chr11:61089971-61090241(-)$1	270	188	212	25.1040
&bb^^^^^^^^^^^^^^^^^^bb8	chr10:102760764-102761051(+)$1	287	199	223	23.5410
ddddyyyyyyyyyyyyyyyydddd	chr22:21242539-21242804(+)$1	265	228	252	22.5111
#ddddwwwwwwwwwwwwwwdddd2	chr21:46915618-46915835(+)$1	217	14	38	19.0412
^^^^^^^^^^^^^^^^^^^ccc]b	chrX:48126708-48126956(+)$1	248	112	136	22.9295
ffffyyyyyyyyyyyyyyyyffff	chr3:48310414-48310685(+)$1	271	198	222	22.7194
)cccwwwwwwwwwwwwwwccc000	chr17:34851655-34851999(-)$1	344	146	170	19.3693
iiii^^^^^^^^^^^^^^^^^^^^	chrX:129336832-129337158(-)$1	326	206	230	26.1976
"ccc^^^^^^^^^^^^^^^^^^^^	chr17:56405566-56405783(-)$1	217	24	48	26.6754
!ccc^^^^^^^^^^^^^^^^^^^^	chr12:56414873-56415264(+)$1	391	168	192	26.7484
[cccyyyyyyyyyyyyyyyycccd	chr7:99268573-99268948(-)$1	375	142	166	23.8772
ffff^^^^^^^^^^^^^^^^^^^^	chr3:38183659-38183982(+)$1	323	274	298	26.0909
ffff^^^^^^^^^^^^^^^^^^^^	chr11:72433023-72433350(-)$1	327	219	243	26.0909
eeeeyyyyyyyyyyyyyyyyeeee	chr10:52154133-52154420(-)$1	287	111	135	22.8789
ffff^^^^^^^^^^^^^^^^^^^^	chr12:48438443-48438715(-)$1	272	52	76	26.0909
hccc^^^^^^^^^^^^^^^^^^^c	chr1:70697347-70697572(+)$1	225	96	120	25.8475
[ddddvvvvvvvvvvvvvdddd]b	chr16:23880276-23880568(+)$1	292	22	46	17.2705
ffff^^^^^^^^^^^^^^^^^^^^	chr2:203630717-203630957(+)$1	240	51	75	26.0909
"ccc^^^^^^^^^^^^^^^^^^^^	chr17:38296478-38296751(+)$1	273	72	96	26.6754
====yyyyyyyyyyyyyyyy====	chr17:3799996-3800322(-)$1	326	107	131	23.4978
[cccxxxxxxxxxxxxxxxcccii	chr10:70516228-70516489(+)$1	261	9	33	21.3743
ffffyyyyyyyyyyyyyyyyffff	chr1:153618152-153618449(+)$1	297	231	255	22.7194
"cccvvvvvvvvvvvvvccc333f	chr5:139494627-139494904(+)$1	277	215	239	18.7985
ffff^^^^^^^^^^^^^^^^^^^^	chr1:36032109-36032356(+)$1	247	114	138	26.0909
ggggxxxxxxxxxxxxxxxggggg	chr9:34635196-34635454(-)$1	258	100	124	20.5242
"ddddwwwwwwwwwwwwwwdddde	chr21:45730798-45731030(+)$1	232	70	94	19.0653
[cccvvvvvvvvvvvvvccc]ccc	chr3:50138871-50139132(+)$1	261	168	192	18.4389
gggg^^^^^^^^^^^^^^^^^^^^	chr1:109476987-109477307(-)$1	320	118	142	26.3005
gggg^^^^^^^^^^^^^^^^^^gg	chr12:49976481-49976780(+)$1	299	174	198	25.3230
gggg^^^^^^^^^^^^^^^^^^gg	chr12:49976580-49976824(+)$1	244	75	99	25.3230
hhhh^^^^^^^^^^^^^^^^^^hh	chr15:65869907-65870145(+)$1	238	31	55	23.7642
[ddddwwwwwwwwwwwwwwdddd]	chr12:54105493-54105826(-)$1	333	113	137	19.2118
ffff^^^^^^^^^^^^^^^^^^^^	chr3:9860773-9861082(+)$1	309	179	203	26.0909
e^^^^^^^^^^^^^^^^^^^^^^^	chr1:206635112-206635461(+)$1	349	101	125	26.0617
eee^^^^^^^^^^^^^^^^^^^ee	chr1:36521814-36522129(+)$1	315	284	308	25.1320
!!cccvvvvvvvvvvvvvccc22=	chr21:46915548-46915806(+)$1	258	119	143	18.3825
cccyyyyyyyyyyyyyyyyccc::	chr5:89755427-89755735(-)$1	308	230	254	21.1992
eeeeewwwwwwwwwwwwwweeeee	chr13:113539411-113539665(+)$1	254	90	114	18.9388
!!bbyyyyyyyyyyyyyyyybb22	chr12:102792754-102793073(-)$1	319	76	100	22.7916
e^^^^^^^^^^^^^^^^^^^^^^^	chr4:57326684-57326926(+)$1	242	73	97	26.0617
[cccyyyyyyyyyyyyyyyyccce	chr17:48829329-48829609(+)$1	280	93	117	23.9847
ffff^^^^^^^^^^^^^^^^^^^^	chr4:762713-762989(-)$1	276	158	182	26.0909
ee^^^^^^^^^^^^^^^^^^^^ee	chr1:45116463-45116689(+)$1	226	116	140	25.1459
^^^^^^^^^^^^^^^^^^^dddd4	chr13:30779617-30779894(-)$1	277	86	110	22.9165
gggggwwwwwwwwwwwwwwggggg	chr12:57450080-57450367(-)$1	287	2	26	19.1172
eee[bbuuuuuuuuuuuubb]eee	chr13:113539263-113539505(+)$1	242	67	91	16.9178
!cccyyyyyyyyyyyyyyyyccc2	chr3:148889999-148890309(+)$1	310	212	236	23.9716
"ccc^^^^^^^^^^^^^^^^^^^^	chr17:56405583-56405828(-)$1	245	69	93	26.6754
gggg^^^^^^^^^^^^^^^^^^^^	chr9:34635408-34635713(-)$1	305	173	197	26.3005
^^^^^^^^^^^^^^^^^^^dddd2	chr19:6663128-6663451(-)$1	323	28	52	22.5726
eeeexxxxxxxxxxxxxxxeeeee	chrX:79931518-79931790(-)$1	272	216	240	20.2268
!!bb^^^^^^^^^^^^^^^^^^^^	chr10:102760851-102761093(+)$1	242	32	56	26.0837
[cccxxxxxxxxxxxxxxxccc]c	chr4:1019990-1020222(+)$1	232	183	207	21.5506
bb^^^^^^^^^^^^^^^^^^bb>>	chr17:4618708-4619045(+)$1	337	152	176	23.3424
eeeeyyyyyyyyyyyyyyyyeeee	chr21:46915752-46915996(+)$1	244	112	136	22.8789
[dddd^^^^^^^^^^^^^^^^^^^	chr5:122165412-122165689(+)$1	277	118	142	24.8895
ffff^^^^^^^^^^^^^^^^^^^^	chr2:209170044-209170314(+)$1	270	195	219	26.0909
hccc^^^^^^^^^^^^^^^^^^^c	chr1:70697333-70697547(+)$1	214	110	134	25.8475
ddddxxxxxxxxxxxxxxxdddd:	chr8:41512497-41512808(-)$1	311	56	80	19.3329
hhhh^^^^^^^^^^^^^^^^^^^^	chr13:30779985-30780204(-)$1	219	86	110	25.4154
"ccc^^^^^^^^^^^^^^^^^^^^	chr17:56405546-56405766(-)$1	220	7	31	26.6754

#otherMatches

#Seq PSSM
UGUGUUCAGACACACACAUCACAG	chr9:34635254-34635579(-)$1	325	225	249	20.5242
AGGCACCGUCUCUCCCACACACCA	chr10:102760893-102761175(+)$1	282	70	94	23.5410
CAACCAUAUUCUUUCGUCAAUAGU	chr11:61089971-61090241(-)$1	270	188	212	25.1040
AGGCACCGUCUCUCCCACACACCA	chr10:102760764-102761051(+)$1	287	199	223	23.5410
UCCUUGGCAUGUAUAUUAGUAGGA	chr22:21242539-21242804(+)$1	265	228	252	22.5111
cgcacacacacauccacacGUGCU	chr21:46915618-46915835(+)$1	217	14	38	19.0412
CCCCUCAUCCGAUUCCCCUGUAUC	chrX:48126708-48126956(+)$1	248	112	136	22.9295
GGGCGAAACUUUAGCCUCAAGUCC	chr3:48310414-48310685(+)$1	271	198	222	22.7194
CAGGGCCACAUUUCACUACCUUCA	chr17:34851655-34851999(-)$1	344	146	170	19.3693
CAUUUCUAUACAUCUAAUACAUAA	chrX:129336832-129337158(-)$1	326	206	230	26.1976
cccacacacacacacacaaacaAC	chr17:56405566-56405783(-)$1	217	24	48	26.6754
ccccucuccuucucucccucucuc	chr12:56414873-56415264(+)$1	391	168	192	26.7484
cgugggccacacauaaaauacaca	chr7:99268573-99268948(-)$1	375	142	166	23.8772
GCACUCAUCUAUUCCUUUUCUCUU	chr3:38183659-38183982(+)$1	323	274	298	26.0909
GAUUCACAAACACUUAAAGACAUA	chr11:72433023-72433350(-)$1	327	219	243	26.0909
UUGUAAAAUCAACACUAUUGACAG	chr10:52154133-52154420(-)$1	287	111	135	22.8789
uacacacacacccacacacacaaa	chr12:48438443-48438715(-)$1	272	52	76	26.0909
AGGUGUAAAAGAAAAUCAUAGUAA	chr1:70697347-70697572(+)$1	225	96	120	25.8475
augccgaaauagaagugaggcgac	chr16:23880276-23880568(+)$1	292	22	46	17.2705
AUUAGACUUCUUUAAAacacacac	chr2:203630717-203630957(+)$1	240	51	75	26.0909
AGUGCCCCGCCCCUCCCCCAacac	chr17:38296478-38296751(+)$1	273	72	96	26.6754
CACACAGCAUCCUUCCACACUGUG	chr17:3799996-3800322(-)$1	326	107	131	23.4978
CAGGCACUGAACGCUAAUCCCUUU	chr10:70516228-70516489(+)$1	261	9	33	21.3743
GCACAUAUACCAUAACCAGCGUGU	chr1:153618152-153618449(+)$1	297	231	255	22.7194
aguuaaaaaaaaaaaaaaaCCUGU	chr5:139494627-139494904(+)$1	277	215	239	18.7985
GGGGGACcacacacacacacacac	chr1:36032109-36032356(+)$1	247	114	138	26.0909
UGUGUUCAGACACACACAUCACAG	chr9:34635196-34635454(-)$1	258	100	124	20.5242
UGCCCCACUCUUGAUUUCAGGGCU	chr21:45730798-45731030(+)$1	232	70	94	19.0653
AGUAAAUCCAGAACAUAUACAAGG	chr3:50138871-50139132(+)$1	261	168	192	18.4389
GGUGCCAACUUCAACAUUCACAUU	chr1:109476987-109477307(-)$1	320	118	142	26.3005
uauacacaaagauacacacacaua	chr12:49976481-49976780(+)$1	299	174	198	25.3230
uauacacaaagauacacacacaua	chr12:49976580-49976824(+)$1	244	75	99	25.3230
CUGUGCACAAACAUAAAAAAUGGC	chr15:65869907-65870145(+)$1	238	31	55	23.7642
acaugcacaaauacacacucaugc	chr12:54105493-54105826(-)$1	333	113	137	19.2118
agauccaccuacccaucuaucuac	chr3:9860773-9861082(+)$1	309	179	203	26.0909
acacacacauauuuuacacacaca	chr1:206635112-206635461(+)$1	349	101	125	26.0617
CUCCUAUCUCAUACACAAUUCUGA	chr1:36521814-36522129(+)$1	315	284	308	25.1320
acaugcccauacacuccacauagg	chr21:46915548-46915806(+)$1	258	119	143	18.3825
GACAACAUUAUAACUAAAAGUCGA	chr5:89755427-89755735(-)$1	308	230	254	21.1992
uaugcacauaUCAUGAACAGCGUA	chr13:113539411-113539665(+)$1	254	90	114	18.9388
UAAUGCAGCUCUCCAUCAGAAUCC	chr12:102792754-102793073(-)$1	319	76	100	22.7916
uagaaaaccgcacacauaaaacuu	chr4:57326684-57326926(+)$1	242	73	97	26.0617
CUUGAUAAUUAAAAAGAAUACAAG	chr17:48829329-48829609(+)$1	280	93	117	23.9847
AUUCUCACAAUAAUAACAAUGAAA	chr4:762713-762989(-)$1	276	158	182	26.0909
guacacacacacacauuuacacac	chr1:45116463-45116689(+)$1	226	116	140	25.1459
UAACUUUUAAUGUACAUcacacac	chr13:30779617-30779894(-)$1	277	86	110	22.9165
GAGGAAAGGAAAUUAAAUGUCCUU	chr12:57450080-57450367(-)$1	287	2	26	19.1172
GCAAGCUCCUGcacacaugcaugc	chr13:113539263-113539505(+)$1	242	67	91	16.9178
UGACCUCAAUCAAUUUAAUUGUCU	chr3:148889999-148890309(+)$1	310	212	236	23.9716
cccacacacacacacacaaacaAC	chr17:56405583-56405828(-)$1	245	69	93	26.6754
GGACAUACACCAUGCAGAUCCUGA	chr9:34635408-34635713(-)$1	305	173	197	26.3005
acacacauuacacacacaacauca	chr19:6663128-6663451(-)$1	323	28	52	22.5726
CUGGAUUAUUUUACUCUUCCCAGG	chrX:79931518-79931790(-)$1	272	216	240	20.2268
ACUGCACCACUCACCUUCCUAGUC	chr10:102760851-102761093(+)$1	242	32	56	26.0837
GGACUUUCCCUGCUCCACCGUCAC	chr4:1019990-1020222(+)$1	232	183	207	21.5506
cggacacacacacacacacacgga	chr17:4618708-4619045(+)$1	337	152	176	23.3424
ugcacacauacauauacacaugca	chr21:46915752-46915996(+)$1	244	112	136	22.8789
UGUCCUGACCCUCUUUGAAUUAAG	chr5:122165412-122165689(+)$1	277	118	142	24.8895
UAUUUAUUAAAACAAUUUCUUCUC	chr2:209170044-209170314(+)$1	270	195	219	26.0909
AGGUGUAAAAGAAAAUCAUAGUAA	chr1:70697333-70697547(+)$1	214	110	134	25.8475
CACAUACCUCCAUUCCACUUGUGA	chr8:41512497-41512808(-)$1	311	56	80	19.3329
acacacacacacacacacacacac	chr13:30779985-30780204(-)$1	219	86	110	25.4154
cccacacacacacacacaaacaAC	chr17:56405546-56405766(-)$1	220	7	31	26.6754

#DB
((((...............)))))	chr9:34635254-34635579(-)$1	1	225	249	20.5242
.((..................)).	chr10:102760893-102761175(+)$1	1	70	94	23.5410
(.....................))	chr11:61089971-61090241(-)$1	1	188	212	25.1040
.((..................)).	chr10:102760764-102761051(+)$1	1	199	223	23.5410
((((................))))	chr22:21242539-21242804(+)$1	1	228	252	22.5111
.((((..............)))).	chr21:46915618-46915835(+)$1	1	14	38	19.0412
...................))).)	chrX:48126708-48126956(+)$1	1	112	136	22.9295
((((................))))	chr3:48310414-48310685(+)$1	1	198	222	22.7194
.(((..............)))...	chr17:34851655-34851999(-)$1	1	146	170	19.3693
((((....................	chrX:129336832-129337158(-)$1	1	206	230	26.1976
.(((....................	chr17:56405566-56405783(-)$1	1	24	48	26.6754
.(((....................	chr12:56414873-56415264(+)$1	1	168	192	26.7484
.(((................))))	chr7:99268573-99268948(-)$1	1	142	166	23.8772
((((....................	chr3:38183659-38183982(+)$1	1	274	298	26.0909
((((....................	chr11:72433023-72433350(-)$1	1	219	243	26.0909
((((................))))	chr10:52154133-52154420(-)$1	1	111	135	22.8789
((((....................	chr12:48438443-48438715(-)$1	1	52	76	26.0909
((((...................)	chr1:70697347-70697572(+)$1	1	96	120	25.8475
.((((.............)))).)	chr16:23880276-23880568(+)$1	1	22	46	17.2705
((((....................	chr2:203630717-203630957(+)$1	1	51	75	26.0909
.(((....................	chr17:38296478-38296751(+)$1	1	72	96	26.6754
((((................))))	chr17:3799996-3800322(-)$1	1	107	131	23.4978
.(((...............)))))	chr10:70516228-70516489(+)$1	1	9	33	21.3743
((((................))))	chr1:153618152-153618449(+)$1	1	231	255	22.7194
.(((.............)))...)	chr5:139494627-139494904(+)$1	1	215	239	18.7985
((((....................	chr1:36032109-36032356(+)$1	1	114	138	26.0909
((((...............)))))	chr9:34635196-34635454(-)$1	1	100	124	20.5242
.((((..............)))))	chr21:45730798-45731030(+)$1	1	70	94	19.0653
.(((.............))).)))	chr3:50138871-50139132(+)$1	1	168	192	18.4389
((((....................	chr1:109476987-109477307(-)$1	1	118	142	26.3005
((((..................))	chr12:49976481-49976780(+)$1	1	174	198	25.3230
((((..................))	chr12:49976580-49976824(+)$1	1	75	99	25.3230
((((..................))	chr15:65869907-65870145(+)$1	1	31	55	23.7642
.((((..............)))).	chr12:54105493-54105826(-)$1	1	113	137	19.2118
((((....................	chr3:9860773-9861082(+)$1	1	179	203	26.0909
(.......................	chr1:206635112-206635461(+)$1	1	101	125	26.0617
(((...................))	chr1:36521814-36522129(+)$1	1	284	308	25.1320
..(((.............)))..)	chr21:46915548-46915806(+)$1	1	119	143	18.3825
(((................)))..	chr5:89755427-89755735(-)$1	1	230	254	21.1992
(((((..............)))))	chr13:113539411-113539665(+)$1	1	90	114	18.9388
..((................))..	chr12:102792754-102793073(-)$1	1	76	100	22.7916
(.......................	chr4:57326684-57326926(+)$1	1	73	97	26.0617
.(((................))))	chr17:48829329-48829609(+)$1	1	93	117	23.9847
((((....................	chr4:762713-762989(-)$1	1	158	182	26.0909
((....................))	chr1:45116463-45116689(+)$1	1	116	140	25.1459
...................)))).	chr13:30779617-30779894(-)$1	1	86	110	22.9165
(((((..............)))))	chr12:57450080-57450367(-)$1	1	2	26	19.1172
(((.((............)).)))	chr13:113539263-113539505(+)$1	1	67	91	16.9178
.(((................))).	chr3:148889999-148890309(+)$1	1	212	236	23.9716
.(((....................	chr17:56405583-56405828(-)$1	1	69	93	26.6754
((((....................	chr9:34635408-34635713(-)$1	1	173	197	26.3005
...................)))).	chr19:6663128-6663451(-)$1	1	28	52	22.5726
((((...............)))))	chrX:79931518-79931790(-)$1	1	216	240	20.2268
..((....................	chr10:102760851-102761093(+)$1	1	32	56	26.0837
.(((...............))).)	chr4:1019990-1020222(+)$1	1	183	207	21.5506
((..................))..	chr17:4618708-4619045(+)$1	1	152	176	23.3424
((((................))))	chr21:46915752-46915996(+)$1	1	112	136	22.8789
.((((...................	chr5:122165412-122165689(+)$1	1	118	142	24.8895
((((....................	chr2:209170044-209170314(+)$1	1	195	219	26.0909
((((...................)	chr1:70697333-70697547(+)$1	1	110	134	25.8475
((((...............)))).	chr8:41512497-41512808(-)$1	1	56	80	19.3329
((((....................	chr13:30779985-30780204(-)$1	1	86	110	25.4154
.(((....................	chr17:56405546-56405766(-)$1	1	7	31	26.6754

#PSSM
e : 0.15	f : 0.15	[ : 0.12	g : 0.11	" : 0.09	! : 0.07	h : 0.06	^ : 0.04	& : 0.03	d : 0.03	# : 0.01	) : 0.01	i : 0.01	= : 0.01	c : 0.01	b : 0.01	
c : 0.25	f : 0.15	g : 0.11	d : 0.11	e : 0.11	^ : 0.09	b : 0.04	! : 0.04	h : 0.03	i : 0.01	= : 0.01	
c : 0.26	f : 0.15	^ : 0.12	g : 0.11	d : 0.11	e : 0.09	b : 0.06	h : 0.03	i : 0.01	= : 0.01	
c : 0.25	^ : 0.17	f : 0.15	g : 0.11	d : 0.11	e : 0.06	h : 0.03	b : 0.03	i : 0.01	= : 0.01	y : 0.01	[ : 0.01	
^ : 0.53	y : 0.17	x : 0.09	d : 0.07	v : 0.03	w : 0.01	c : 0.01	e : 0.01	g : 0.01	b : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.06	b : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.06	u : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.06	u : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.06	u : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.06	u : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.06	u : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.06	u : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.06	u : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.06	u : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.06	u : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.06	u : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.06	u : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.09	v : 0.03	c : 0.03	u : 0.01	
^ : 0.55	y : 0.17	x : 0.09	w : 0.07	c : 0.06	d : 0.01	b : 0.01	
^ : 0.50	y : 0.15	c : 0.12	d : 0.11	g : 0.04	e : 0.03	b : 0.01	
^ : 0.49	c : 0.14	d : 0.12	e : 0.06	g : 0.04	f : 0.03	] : 0.03	b : 0.03	= : 0.01	3 : 0.01	
^ : 0.46	d : 0.12	c : 0.12	e : 0.07	b : 0.06	g : 0.04	f : 0.03	0 : 0.01	= : 0.01	3 : 0.01	2 : 0.01	
^ : 0.36	e : 0.12	d : 0.11	g : 0.07	c : 0.06	] : 0.04	b : 0.03	f : 0.03	2 : 0.03	0 : 0.01	= : 0.01	i : 0.01	3 : 0.01	h : 0.01	: : 0.01	> : 0.01	
^ : 0.33	e : 0.15	g : 0.07	2 : 0.06	c : 0.06	f : 0.04	8 : 0.03	d : 0.03	b : 0.03	= : 0.03	: : 0.03	0 : 0.01	i : 0.01	h : 0.01	] : 0.01	4 : 0.01	> : 0.01	

#score	1470.9350962289595
#seq	63
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_UTR_m3_run1.txt

#BEAR
!!dddd[cccooooooccc]dddd22cccf	chr7:102119211-102119453(-)$1	242	71	101	9.4801
ccccc[bb[cccnnnnnccc22bb]ccc]c	chr12:131357028-131357263(+)$1	235	112	142	9.5524
gggggg!!cccnnnnnccc22gggggggdd	chr15:64385842-64386171(-)$1	329	27	57	11.0092
[dddd!!a[cccmmmmccc]a22ddddbb5	chr3:40498729-40498955(+)$1	226	172	202	8.4208
ggggdddd!!annnnna22dddd333gggg	chr12:112847289-112847510(-)$1	221	114	144	9.6687
eee"""bb[ddddllldddd]bb22eeeee	chr1:197115494-197115795(-)$1	301	269	299	8.6466
d[ffffff[ddddllldddd22ffffffdd	chr1:110950151-110950415(-)$1	264	134	164	7.5973
=====!!eeeeemmmmeeeee=========	chr11:64084824-64085089(-)$1	265	132	162	8.3677
eeee[bb!!cccmmmmccc4444bb]eeee	chr5:177019109-177019432(+)$1	323	267	297	8.8804
eeeee!!ddddmmmmdddd>>>>>>>>>>>	chr12:96252645-96252923(+)$1	278	194	224	7.6568
ffffddddcccnnnnnccc333dddd]fff	chr2:98262431-98262750(+)$1	319	93	123	11.0044
cc[dddd[cccooooooccc]ddddccc::	chr8:74204911-74205132(-)$1	221	112	142	7.8512
dddd"""ddddmmmmdddd]ddddbb]bb:	chr11:118272322-118272533(+)$1	211	120	150	7.7198
dddd"""ddddmmmmdddd]ddddbb]bb:	chr11:118272300-118272522(+)$1	222	142	172	7.7198
!!bb!!eeeeennnnneeeee]bb22dddd	chr12:50135255-50135495(+)$1	240	80	110	8.9986
eeeee"""cccnnnnnccc]eeeeeFFFFF	chr6:27775856-27776113(+)$1	257	112	142	9.2746
ffa[eeeee!!aooooooa22eeeee]a]f	chr5:85913657-85913915(+)$1	258	105	135	8.1000
[cccccc[ddddlllddddccc]ccc]fff	chr17:37009849-37010082(-)$1	233	157	187	8.7067
fffff[eeeeennnnneeeee]ffffff]c	chr3:129034831-129035064(-)$1	233	191	221	8.7967
ddd"""ccccccmmmmccc4444ccc22dd	chr1:46049624-46049885(+)$1	261	229	259	9.4453
eeffffffcccnnnnnccc>>>>>>>>>>>	chr8:74205736-74205964(-)$1	228	174	204	8.7708
c[dddd!!cccnnnnnccc22dddd]ccc]	chr20:42295774-42296004(+)$1	230	101	131	11.3015
eeee"""ddddnnnnndddd]eeeee]bb]	chr11:5269438-5269750(-)$1	312	135	165	11.8206
ccc[dddd[a[aooooooa]a]dddd]ccc	chr3:197677705-197677948(+)$1	243	43	73	8.8512
ee[eeeee!!bboooooobb]eeeee]eee	chr4:174253029-174253318(-)$1	289	207	237	7.7514
eeee"""eeeeemmmmeeeee4444eeeee	chr17:16284307-16284595(+)$1	288	48	78	8.5647
!!dddd[ddddnnnnndddd]dddd]dddd	chr5:140026967-140027302(-)$1	335	75	105	10.9950
da[bb!!ddddnnnnndddd]bb]a]dddd	chrX:153626619-153626835(+)$1	216	126	156	10.3830
ggggg####cccmmmmccc4444ggggggg	chr11:85779915-85780219(-)$1	304	171	201	9.7105
ddddbb[cccnnnnnccc]bb]dddd]ddd	chr20:60962076-60962292(+)$1	216	102	132	8.3905
f[ccc[eeeeennnnneeeee]cccfffff	chr7:128379315-128379579(+)$1	264	19	49	9.5266
geeeee[bbbbnnnnnbb]bbeeeee22gg	chr12:120933828-120934095(+)$1	267	182	212	8.3681
ee[gggggggooooooggggggg]eeeee2	chr1:109968899-109969161(-)$1	262	143	173	8.2687
[bbccc[ddddlllddddccc]bb]a]bb]	chr19:572492-572804(+)$1	312	185	215	7.6363
eee"""bbddddmmmmdddd333bb333ee	chr19:18684002-18684228(+)$1	226	17	47	9.3057
ccc!!ccc[cccnnnnnccc]ccc22ccc]	chr11:8704240-8704464(+)$1	224	34	64	10.0602
ddddaccc!!bbnnnnnbb22ccc]a]ddd	chrX:152961487-152961763(+)$1	276	2	32	8.8243
gccc!!bbcccnnnnnccc22bb22ccc]g	chr2:176046283-176046528(-)$1	245	197	227	10.5115
=========bbmmmmbb]============	chr16:56642404-56642656(+)$1	252	23	53	7.6140
[dddd[bb[cccmmmmccc]bbdddd]fff	chr19:39926463-39926688(-)$1	225	127	157	8.7349
eeeee[bb[ccclllccc]bbeeeee22dd	chr8:125551267-125551581(+)$1	314	50	80	8.3721
fff[accc[bbnnnnnbbccc]a]ffffff	chr22:21998367-21998637(+)$1	270	76	106	9.3001
eeebb!!ddddooooooddddbb]eeeee]	chr2:27294368-27294613(-)$1	245	109	139	9.2502
dd!!ccc[abbnnnnnbb]a]ccc22dddd	chr1:33502293-33502576(-)$1	283	37	67	9.4398
[dddd[bbbboooooobb]bb]dddd]fff	chr15:90777004-90777263(-)$1	259	159	189	7.9519
eeee"""ddddmmmmdddd]eeeeeeeeee	chr1:235291996-235292247(-)$1	251	149	179	9.0232
d[dddd"""ccclllcccdddd]ddddbb[	chr1:228645377-228645637(-)$1	260	151	181	8.6072
dddda!!ddddnnnnndddd22a]dddd::	chr20:30193032-30193344(+)$1	312	204	234	9.7597
"""dddd[ddddmmmmdddd]dddd22bb]	chr15:45003618-45003913(+)$1	295	114	144	8.1691
affffffddddnnnnndddd]ffffff22a	chr6:26285544-26285845(-)$1	301	223	253	9.0192
d[ccc[bb[bbnnnnnbbbb]ccc]dddd:	chr15:44580970-44581218(+)$1	248	80	110	8.7015
ee[a[dddd[annnnna]dddd]a]eeeee	chr1:36106924-36107221(-)$1	297	49	79	9.9559

#otherMatches

#Seq PSSM
GAAGAGGCCUCUUAUUAGGGCUCUGGUGGC	chr7:102119211-102119453(-)$1	242	71	101	9.4801
GGCUGCGCAGGGAGAGCCCCAGGUCCAGUU	chr12:131357028-131357263(+)$1	235	112	142	9.5524
UUGAGGCCCCUUCCCUAGGUCCUUCGAGCU	chr15:64385842-64386171(-)$1	329	27	57	11.0092
ACCUCCACCUCCGCUGGGAAGCUGAGGCGC	chr3:40498729-40498955(+)$1	226	172	202	8.4208
UGCAAGGUAAGAAUCGCGGGCCUGUCUGCA	chr12:112847289-112847510(-)$1	221	114	144	9.6687
cccgaccgagcggaggccgcccgcggggcu	chr1:197115494-197115795(-)$1	301	269	299	8.6466
GUGCCGCUGGGUUCUGAGCCGGAGUGGUCG	chr1:110950151-110950415(-)$1	264	134	164	7.5973
GGGGGUGGGGUCCCGUGGCUUCCCCCUGCG	chr11:64084824-64085089(-)$1	265	132	162	8.3677
CCCGGACGAGACCAUGGUCAUAGGUGCGGG	chr5:177019109-177019432(+)$1	323	267	297	8.8804
GCCGUGGUUACGAUGGUAAGGAGAAAGAGA	chr12:96252645-96252923(+)$1	278	194	224	7.6568
AGUUUUGCUGCUAGUCGCGGACGCAAUGGC	chr2:98262431-98262750(+)$1	319	93	123	11.0044
GGAGGUUCCUGCUGUGCCAGAAACCCUUAA	chr8:74204911-74205132(-)$1	221	112	142	7.8512
UGUGAGACCGCCGAGGCGGGCACACGGGCG	chr11:118272322-118272533(+)$1	211	120	150	7.7198
UGUGAGACCGCCGAGGCGGGCACACGGGCG	chr11:118272300-118272522(+)$1	222	142	172	7.7198
AGUCAGAGCACAUCCGGUGUUAGAAGCGCU	chr12:50135255-50135495(+)$1	240	80	110	8.9986
AGAUAAUAGGCCUUUUGCCAUGUCUGGGCG	chr6:27775856-27776113(+)$1	257	112	142	9.2746
CAGUCCUUGCGCACCGGGGAACAAGGUCGU	chr5:85913657-85913915(+)$1	258	105	135	8.1000
UCCACCAUCUGUCGUGCAGUGGCUGGCGGA	chr17:37009849-37010082(-)$1	233	157	187	8.7067
gcggccgcucccgccuggagccgccgcgcg	chr3:129034831-129035064(-)$1	233	191	221	8.7967
CGCGGAGCUGGUUUCUGCCGACAAGUAAGC	chr1:46049624-46049885(+)$1	261	229	259	9.4453
GAGCCAGAUACUUUUUGUGUCACUUUUUCU	chr8:74205736-74205964(-)$1	228	174	204	8.7708
gggcucugccggcgggcgggcgagcgcggc	chr20:42295774-42296004(+)$1	230	101	131	11.3015
AGUGCCCUGUCCUCCAGAUACCACUGAGCU	chr11:5269438-5269750(-)$1	312	135	165	11.8206
GACGAGGUGGGAAACUUGUGUGGCUUGGUU	chr3:197677705-197677948(+)$1	243	43	73	8.8512
UUGUAUAGCUGAUAAGAUUCUCUGUAGAGA	chr4:174253029-174253318(-)$1	289	207	237	7.7514
AAGUGACGCAACACUCGUUGCAUAAAUUUG	chr17:16284307-16284595(+)$1	288	48	78	8.5647
GGUCAGACCGGAGCACUUGGCCUGAAGACC	chr5:140026967-140027302(-)$1	335	75	105	10.9950
GCAGUUGUCGUCUCUUGCGGUGCCGUUGCU	chrX:153626619-153626835(+)$1	216	126	156	10.3830
CGGGGGCAAGGGAGUGCCCGACAUCUUGUC	chr11:85779915-85780219(-)$1	304	171	201	9.7105
UGUGGUGGCAGCAGGUGUGGCGCGCGGCGC	chr20:60962076-60962292(+)$1	216	102	132	8.3905
GGUUUGCUGAUGAUUGGUCGGGAGGCCGCC	chr7:128379315-128379579(+)$1	264	19	49	9.5266
UUCUCCACGGUGAGAAACUCGGGGGGCCAG	chr12:120933828-120934095(+)$1	267	182	212	8.3681
GGUGCCGGUGGAGUCGUGUUGGUCCUCAGA	chr1:109968899-109969161(-)$1	262	143	173	8.2687
GCACCCACGGAGCCUCCGGGGCUGGUGAGG	chr19:572492-572804(+)$1	312	185	215	7.6363
GCAACUGUGGUGUAGGCACCUGAGCUUGUG	chr19:18684002-18684228(+)$1	226	17	47	9.3057
CGGAAGUGAGGCGUUUUGCCCCGCCCCCGU	chr11:8704240-8704464(+)$1	224	34	64	10.0602
UUACCCCUCUGCCCCUAGCCAAGGAGUGUG	chrX:152961487-152961763(+)$1	276	2	32	8.8243
UAGGGACCCAUUCAUUGUGCCGGCGCCUCA	chr2:176046283-176046528(-)$1	245	197	227	10.5115
CGGGGCGGGGCUUUUGCACUCGUCCCGGCU	chr16:56642404-56642656(+)$1	252	23	53	7.6140
AGGUUGUCUAGUCCACGCUCGGAGCCAUGC	chr19:39926463-39926688(-)$1	225	127	157	8.7349
GCGGAAGUGGCCGCCGGCAACUCCGCCCUU	chr8:125551267-125551581(+)$1	314	50	80	8.3721
GCAGGUCACGAUGAACUCUGAGUGUGUGGA	chr22:21998367-21998637(+)$1	270	76	106	9.3001
UCGCUGGUGGCGUCGGAGCCGAGCCGGACU	chr2:27294368-27294613(-)$1	245	109	139	9.2502
UGGGCCAGUGUGAGCGGCGAGUGGGACGUG	chr1:33502293-33502576(-)$1	283	37	67	9.4398
GCAGUCGCCUGUCCAAGGAGCUGCUGGCCG	chr15:90777004-90777263(-)$1	259	159	189	7.9519
AGGGUUCGUGGCCCACCGCUCCUUCGCGGU	chr1:235291996-235292247(-)$1	251	149	179	9.0232
GCGCGCCAAGGCUAAGUCGCGCUCGUCGCG	chr1:228645377-228645637(-)$1	260	151	181	8.6072
GCUGCGCGCUGAAGGCCGGCAAGACAGCGA	chr20:30193032-30193344(+)$1	312	204	234	9.7597
AUUCGGGCCGAGAUGUCUCGCUCCGUGGCC	chr15:45003618-45003913(+)$1	295	114	144	8.1691
CGGCGCCUUGCUCGUCGCGGCGGUGUCAAG	chr6:26285544-26285845(-)$1	301	223	253	9.0192
GAGGGACCUGCGGCUUGCGGCCCCGCCCCC	chr15:44580970-44581218(+)$1	248	80	110	8.7015
CGUCAUCCGAGAGCGCCGUGGAAGUCGUGC	chr1:36106924-36107221(-)$1	297	49	79	9.9559

#DB
..((((.(((......))).))))..))))	chr7:102119211-102119453(-)$1	1	71	101	9.4801
(((((.((.(((.....)))..)).))).)	chr12:131357028-131357263(+)$1	1	112	142	9.5524
((((((..(((.....)))..)))))))))	chr15:64385842-64386171(-)$1	1	27	57	11.0092
.((((..(.(((....))).)..)))))).	chr3:40498729-40498955(+)$1	1	172	202	8.4208
((((((((..(.....)..))))...))))	chr12:112847289-112847510(-)$1	1	114	144	9.6687
(((...((.((((...)))).))..)))))	chr1:197115494-197115795(-)$1	1	269	299	8.6466
(.((((((.((((...))))..))))))))	chr1:110950151-110950415(-)$1	1	134	164	7.5973
(((((..(((((....))))))))))))))	chr11:64084824-64085089(-)$1	1	132	162	8.3677
((((.((..(((....)))....)).))))	chr5:177019109-177019432(+)$1	1	267	297	8.8804
(((((..((((....))))...........	chr12:96252645-96252923(+)$1	1	194	224	7.6568
(((((((((((.....)))...)))).)))	chr2:98262431-98262750(+)$1	1	93	123	11.0044
((.((((.(((......))).)))))))..	chr8:74204911-74205132(-)$1	1	112	142	7.8512
((((...((((....)))).)))))).)).	chr11:118272322-118272533(+)$1	1	120	150	7.7198
((((...((((....)))).)))))).)).	chr11:118272300-118272522(+)$1	1	142	172	7.7198
..((..(((((.....))))).))..))))	chr12:50135255-50135495(+)$1	1	80	110	8.9986
(((((...(((.....))).))))))))))	chr6:27775856-27776113(+)$1	1	112	142	9.2746
(((.(((((..(......)..))))).).)	chr5:85913657-85913915(+)$1	1	105	135	8.1000
.((((((.((((...))))))).))).)))	chr17:37009849-37010082(-)$1	1	157	187	8.7067
(((((.(((((.....))))).)))))).)	chr3:129034831-129035064(-)$1	1	191	221	8.7967
(((...((((((....)))....)))..))	chr1:46049624-46049885(+)$1	1	229	259	9.4453
))(((((((((.....)))...........	chr8:74205736-74205964(-)$1	1	174	204	8.7708
(.((((..(((.....)))..)))).))).	chr20:42295774-42296004(+)$1	1	101	131	11.3015
((((...((((.....)))).))))).)).	chr11:5269438-5269750(-)$1	1	135	165	11.8206
(((.((((.(.(......).).)))).)))	chr3:197677705-197677948(+)$1	1	43	73	8.8512
((.(((((..((......)).))))).)))	chr4:174253029-174253318(-)$1	1	207	237	7.7514
((((...(((((....)))))....)))))	chr17:16284307-16284595(+)$1	1	48	78	8.5647
..((((.((((.....)))).)))).))))	chr5:140026967-140027302(-)$1	1	75	105	10.9950
((.((..((((.....)))).)).).))))	chrX:153626619-153626835(+)$1	1	126	156	10.3830
(((((....(((....)))....)))))))	chr11:85779915-85780219(-)$1	1	171	201	9.7105
((((((.(((.....))).)).)))).)))	chr20:60962076-60962292(+)$1	1	102	132	8.3905
(.(((.(((((.....))))).))))))))	chr7:128379315-128379579(+)$1	1	19	49	9.5266
((((((.((((.....)).)))))))..))	chr12:120933828-120934095(+)$1	1	182	212	8.3681
((.(((((((......))))))).))))).	chr1:109968899-109969161(-)$1	1	143	173	8.2687
.(((((.((((...))))))).)).).)).	chr19:572492-572804(+)$1	1	185	215	7.6363
(((...((((((....))))...))...))	chr19:18684002-18684228(+)$1	1	17	47	9.3057
(((..(((.(((.....))).)))..))).	chr11:8704240-8704464(+)$1	1	34	64	10.0602
((((((((..((.....))..))).).)))	chrX:152961487-152961763(+)$1	1	2	32	8.8243
((((..(((((.....)))..))..))).)	chr2:176046283-176046528(-)$1	1	197	227	10.5115
(((((((((((....)).))))))))))))	chr16:56642404-56642656(+)$1	1	23	53	7.6140
.((((.((.(((....))).)))))).)))	chr19:39926463-39926688(-)$1	1	127	157	8.7349
(((((.((.(((...))).)))))))..))	chr8:125551267-125551581(+)$1	1	50	80	8.3721
(((.((((.((.....))))).).))))))	chr22:21998367-21998637(+)$1	1	76	106	9.3001
(((((..((((......)))))).))))).	chr2:27294368-27294613(-)$1	1	109	139	9.2502
((..(((.(((.....)).).)))..))))	chr1:33502293-33502576(-)$1	1	37	67	9.4398
.((((.((((......)).)).)))).)))	chr15:90777004-90777263(-)$1	1	159	189	7.9519
((((...((((....)))).)))))(((((	chr1:235291996-235292247(-)$1	1	149	179	9.0232
(.((((...(((...))))))).))))((.	chr1:228645377-228645637(-)$1	1	151	181	8.6072
(((((..((((.....))))..).))))..	chr20:30193032-30193344(+)$1	1	204	234	9.7597
...((((.((((....)))).))))..)).	chr15:45003618-45003913(+)$1	1	114	144	8.1691
(((((((((((.....)))).))))))..)	chr6:26285544-26285845(-)$1	1	223	253	9.0192
(.(((.((.((.....)))).))).)))).	chr15:44580970-44581218(+)$1	1	80	110	8.7015
((.(.((((.(.....).)))).).)))))	chr1:36106924-36107221(-)$1	1	49	79	9.9559

#PSSM
e : 0.26	d : 0.21	c : 0.09	g : 0.09	[ : 0.09	f : 0.09	! : 0.05	= : 0.03	" : 0.01	a : 0.01	
e : 0.28	d : 0.19	c : 0.11	[ : 0.09	f : 0.09	! : 0.05	g : 0.05	= : 0.03	a : 0.01	b : 0.01	" : 0.01	
d : 0.24	e : 0.21	c : 0.13	f : 0.11	[ : 0.09	g : 0.05	= : 0.03	b : 0.03	a : 0.01	! : 0.01	" : 0.01	
d : 0.26	e : 0.17	c : 0.11	f : 0.09	g : 0.07	" : 0.05	b : 0.05	[ : 0.05	= : 0.03	! : 0.03	a : 0.01	
d : 0.23	" : 0.15	c : 0.11	e : 0.11	f : 0.07	g : 0.05	! : 0.05	b : 0.05	a : 0.05	= : 0.03	[ : 0.03	
d : 0.19	" : 0.17	! : 0.15	[ : 0.13	c : 0.11	f : 0.05	e : 0.05	g : 0.03	b : 0.03	# : 0.01	= : 0.01	
b : 0.17	! : 0.15	" : 0.13	d : 0.11	c : 0.11	[ : 0.09	e : 0.09	f : 0.05	# : 0.01	g : 0.01	= : 0.01	
d : 0.28	b : 0.17	e : 0.13	c : 0.11	[ : 0.07	! : 0.05	f : 0.03	" : 0.03	a : 0.01	# : 0.01	g : 0.01	= : 0.01	
d : 0.28	c : 0.19	[ : 0.19	e : 0.11	! : 0.07	b : 0.03	# : 0.01	g : 0.01	= : 0.01	a : 0.01	" : 0.01	
c : 0.34	d : 0.30	b : 0.11	e : 0.09	! : 0.07	a : 0.01	g : 0.01	[ : 0.01	
c : 0.30	d : 0.30	b : 0.13	e : 0.09	o : 0.05	a : 0.03	! : 0.01	[ : 0.01	n : 0.01	
n : 0.40	c : 0.17	o : 0.09	d : 0.09	m : 0.09	e : 0.03	a : 0.03	b : 0.03	l : 0.01	
n : 0.46	m : 0.26	o : 0.15	l : 0.07	d : 0.03	
n : 0.46	m : 0.26	o : 0.15	l : 0.11	
n : 0.46	m : 0.26	o : 0.15	l : 0.09	d : 0.01	
n : 0.44	m : 0.17	o : 0.15	d : 0.11	c : 0.05	l : 0.03	b : 0.01	
c : 0.28	d : 0.28	b : 0.11	e : 0.09	o : 0.09	n : 0.05	a : 0.03	g : 0.01	
c : 0.34	d : 0.30	b : 0.11	e : 0.09	o : 0.05	] : 0.03	2 : 0.01	g : 0.01	
c : 0.32	d : 0.32	e : 0.09	] : 0.09	b : 0.05	a : 0.03	2 : 0.01	g : 0.01	= : 0.01	
d : 0.24	] : 0.15	c : 0.11	b : 0.11	2 : 0.09	e : 0.09	4 : 0.05	> : 0.03	3 : 0.01	g : 0.01	= : 0.01	a : 0.01	
] : 0.21	2 : 0.15	d : 0.13	e : 0.13	b : 0.09	4 : 0.05	c : 0.05	a : 0.03	> : 0.03	3 : 0.03	g : 0.01	= : 0.01	
d : 0.19	] : 0.15	e : 0.13	b : 0.09	c : 0.09	2 : 0.07	4 : 0.07	g : 0.03	= : 0.03	> : 0.03	3 : 0.03	f : 0.01	
d : 0.24	b : 0.13	e : 0.13	c : 0.09	4 : 0.07	f : 0.05	] : 0.05	g : 0.03	= : 0.03	> : 0.03	a : 0.03	2 : 0.01	3 : 0.01	
d : 0.26	e : 0.13	c : 0.13	b : 0.09	] : 0.09	f : 0.05	g : 0.03	2 : 0.03	= : 0.03	> : 0.03	3 : 0.01	4 : 0.01	a : 0.01	
d : 0.23	e : 0.17	2 : 0.11	] : 0.09	f : 0.07	b : 0.07	c : 0.05	g : 0.03	= : 0.03	> : 0.03	3 : 0.01	4 : 0.01	a : 0.01	
e : 0.21	d : 0.17	2 : 0.09	c : 0.09	f : 0.09	] : 0.07	g : 0.03	3 : 0.03	= : 0.03	> : 0.03	b : 0.03	a : 0.03	F : 0.01	
] : 0.24	d : 0.15	e : 0.13	c : 0.11	f : 0.09	2 : 0.07	g : 0.05	= : 0.03	> : 0.03	F : 0.01	3 : 0.01	
e : 0.15	f : 0.15	d : 0.15	c : 0.13	b : 0.13	2 : 0.07	g : 0.05	= : 0.03	> : 0.03	F : 0.01	a : 0.01	3 : 0.01	
d : 0.21	e : 0.17	b : 0.13	f : 0.11	c : 0.07	] : 0.07	g : 0.05	= : 0.03	> : 0.03	: : 0.03	F : 0.01	2 : 0.01	
d : 0.19	f : 0.15	e : 0.13	] : 0.11	: : 0.09	g : 0.07	c : 0.05	= : 0.03	> : 0.03	5 : 0.01	F : 0.01	2 : 0.01	[ : 0.01	a : 0.01	

#score	469.8390628755423
#seq	52
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_transcript_m1_run2.txt

#BEAR
eee===========ddddmmmmdddd333==========	chr13:95887746-95887981(-)$1	235	66	105	15.9109
d[ccc[============nnnnn============ccc3	chr16:24763808-24764035(+)$1	227	63	102	16.3994
ee[==========[bbqqqqqqqqbb]==========]e	chr1:90130889-90131142(+)$1	253	99	138	14.5120
ddd[a!!==========oooooo==========22a]dd	chr3:33128942-33129189(-)$1	247	94	133	17.7748
dd[ccc[gggggggcccooooooccc55555ggggggg3	chrX:21969892-21970159(+)$1	267	108	147	15.1654
==========!!ddddoooooodddd]============	chr22:20087186-20087457(+)$1	271	132	171	18.7871
ggggggg$$$$$eeeeeooooooeeeee4444ggggggg	chr7:155461974-155462214(+)$1	240	181	220	16.1139
$$bb[a[a[dddd[cccooooooccc]dddd]a]abb88	chr1:155532349-155532628(-)$1	279	177	216	14.4301
==========[bb[ccclllccc]bb]============	chr2:158613714-158613952(-)$1	238	73	112	16.3461
ccceeeee!!bb!!cccoooooocccbb22eeeee:eee	chr22:19389345-19389593(-)$1	248	172	211	13.7301
fff==========[cccpppppppccc==========00	chr19:34882819-34883024(+)$1	205	34	73	14.0403
============!!cccooooooccc333==========	chr17:8365516-8365776(+)$1	260	158	197	22.7785
b[ccc[iiiiiiiii[cccmmmmccc]iiiiiiiii]cc	chr16:384538-384823(-)$1	285	195	234	14.8088
fffccc[cccccc"""aooooooa333ccc]ccc]ccc3	chr14:31115609-31115877(+)$1	268	14	53	16.5918
))))bb[gggggggcccooooooccc]ggggggg]bb00	chr1:212946359-212946614(-)$1	255	11	50	14.3458
e!!ggggggg!!a[cccooooooccc]a4444ggggggg	chrX:48570038-48570274(-)$1	236	52	91	20.3759
ggggffffff####cccooooooccc22ffffff:eeee	chr2:71637088-71637382(+)$1	294	144	183	15.1912
b!!==========[ccc!!annnnna22ccc]=======	chr1:167933882-167934157(+)$1	275	189	228	15.7229
========[ccc"""bboooooobb4444ccc]======	chr11:5378281-5378517(-)$1	236	157	196	20.0145
ggggggg[ffffff[bboooooobbffffff]ggggggg	chr2:183823959-183824204(-)$1	245	173	212	15.6080
"""==========####bbmmmmbb333==========g	chr6:147543169-147543400(+)$1	231	15	54	16.2217
!!ggggggg####fffffflllffffff4444ggggggg	chr10:65146235-65146488(-)$1	253	181	220	13.4140
gg!!dddd[dddd[cccooooooccc]dddd]dddd]gg	chr1:93014644-93014897(-)$1	253	130	169	15.7313
========[ccc"""bboooooobb4444ccc]======	chr2:169723658-169723904(-)$1	246	5	44	20.0145
iiiiiii!!eeeeecccooooooccc]eeeeeiiiiiii	chr1:246107056-246107283(-)$1	227	93	132	18.2660
GGG==========!!cccnnnnnccc]==========::	chr15:58322729-58322978(-)$1	249	11	50	14.7931
iiiiiiiii[ccc[cccooooooccc]ccc22iiiiiii	chr5:1804076-1804344(+)$1	268	153	192	19.6722
cc[bbiiiiiiiii[bboooooobb]iiiiiiiii]bb]	chr10:52112322-52112603(-)$1	281	165	204	17.1998
ddd[ggggggg"""cccooooooccc22gggggggdddd	chr11:134067686-134067958(-)$1	272	206	245	18.0210
cc!!dddd####eeeeeooooooeeeee333ddddccc2	chr7:91595841-91596085(+)$1	244	109	148	14.4941
ee===========[cccooooooccc]===========]	chr19:2104319-2104614(-)$1	295	81	120	21.8048
cc"""dddd####ddddoooooodddd22dddd22ccc3	chr3:42856090-42856314(-)$1	224	40	79	14.2074
]bbggggggg!!ffffffooooooffffff]ggggggg:	chr6:45229464-45229711(-)$1	247	116	155	13.4174
d[ccc"""bb[a!!cccooooooccc22a]bb4444ccc	chr22:20093132-20093366(+)$1	234	160	199	16.9491
bb[bbeeeee!!ccc!!aooooooa22ccc]eeeee]bb	chr3:152085584-152085832(+)$1	248	132	171	13.4242
bbggggggg[ccc!!bboooooobb4444ccc22ggggg	chr11:105314001-105314354(-)$1	353	268	307	17.3679
c[eeeee[ggggggga[ccclllccc]a]gggggggeee	chr1:225613999-225614223(-)$1	224	22	61	13.2437
ddd]bbiiiiiiiiirrrrrrrrriiiiiiiiiiiiiii	chr7:64260694-64260918(+)$1	224	36	75	13.7605
gggggg"""eeeee!!ammmma]eeeee4444ggggggg	chr21:46292022-46292263(-)$1	241	118	157	12.8842
d[dddd!!ccc[a[bb!!aooooooa22bb]a]ccc333	chr6:2322781-2323036(+)$1	255	151	190	14.2464
[bb[ffffff####cccooooooccc4444ffffff]bb	chr8:54984517-54984821(-)$1	304	241	280	16.3576
!!dddd"""ccceeeeeooooooeeeee22ccc333ddd	chr5:142743504-142743791(-)$1	287	57	96	14.2008
dddd!!ggggggg!!bboooooobb22ggggggg333dd	chr1:228271854-228272119(+)$1	265	193	232	16.3735
[============!!bbpppppppbb]============	chr2:45750827-45751088(-)$1	261	52	91	15.2578
ggggggg[bb!!a[cccnnnnnccc]a22bb]ggggggg	chr18:55799898-55800138(+)$1	240	194	233	15.0313
gggggggeeeee!!cccooooooccc]eeeee]gggggg	chr13:95881631-95881931(-)$1	300	28	67	17.8218
c[ggggggg[ccc[cccnnnnnccc]ccc333ggggggg	chr1:225120781-225121054(+)$1	273	49	88	15.5278
ggggggeeeee[eeeeeooooooeeeee333eeeee>>>	chr7:110890453-110890694(-)$1	241	134	173	14.3583
e"""dddd!!bb"""cccnnnnnccc333bb]dddd22e	chr4:88123757-88124011(-)$1	254	69	108	13.0413
iiiiiii!!bb!!ddddoooooodddd22bb]iiiiiii	chr8:100425154-100425405(+)$1	251	72	111	17.3350
eeiiiiiiiii!!ddddoooooodddd22iiiiiiiii]	chr2:148725551-148725800(-)$1	249	158	197	18.3356
ffffff"""dddd[cccooooooccc]dddd22ffffff	chr19:12046677-12046918(+)$1	241	56	95	14.9721
%==========[a!!ddddllldddd]a]==========	chr16:89555314-89555565(-)$1	251	109	148	16.3635

#otherMatches

#Seq PSSM
UUUGGAUUGGGAAAAAUUGGAGAGUUUGAUUUUCUGAUC	chr13:95887746-95887981(-)$1	235	66	105	15.9109
CUCUGUCAGAGGCUGUUUAUGUAGGACAGUCUUUGCAGU	chr16:24763808-24764035(+)$1	227	63	102	16.3994
guuuauugauuuguguauguguaggccuagguuaauaua	chr1:90130889-90131142(+)$1	253	99	138	14.5120
ugugugugugugugugugugugugCGCGCAUGCugagac	chr3:33128942-33129189(-)$1	247	94	133	17.7748
CUGCUCAUUUUACACUAUGGGGUUAGGGAAAUGUAAAGA	chrX:21969892-21970159(+)$1	267	108	147	15.1654
UGCUGUUAUAAAAUAUGGUUAAGUGUCUAUGGUAGUACU	chr22:20087186-20087457(+)$1	271	132	171	18.7871
caugccucagucucccgaguagccgggauuacaggcaug	chr7:155461974-155462214(+)$1	240	181	220	16.1139
AAGGUGGUGGUUGGUGGGAGCAGCCAGCGACGAGCCCGU	chr1:155532349-155532628(-)$1	279	177	216	14.4301
ucuugaaagaugugggaaauuucagcuuuuuuuggggga	chr2:158613714-158613952(-)$1	238	73	112	16.3461
uccgcagggaucuaggcagaggaguugagaccuguggca	chr22:19389345-19389593(-)$1	248	172	211	13.7301
UCUGGCAUGAGUAUGAGGAUUUGGUUCUGUUCAUGUCUG	chr19:34882819-34883024(+)$1	205	34	73	14.0403
GGAGUUGUCUUUCUAGUUGCUGUAUUCCUGAGGAUAACU	chr17:8365516-8365776(+)$1	260	158	197	22.7785
cuacugggugcuguguuaucagugugccaugguacuggg	chr16:384538-384823(-)$1	285	195	234	14.8088
uaaugaaucacauuuucugauuugcauguguugaaucaa	chr14:31115609-31115877(+)$1	268	14	53	16.5918
cucccauucaacaggugucucauuacucuguugauuguu	chr1:212946359-212946614(-)$1	255	11	50	14.3458
UUUCAGGUCUGUGGGGCCUCUGAGCUGUUUGGGGAUCUG	chrX:48570038-48570274(-)$1	236	52	91	20.3759
cugauuuagaucaaaacuauuuuguuccucugaaagguu	chr2:71637088-71637382(+)$1	294	144	183	15.1912
cccaucagaggcauuguuccuuucuguuacauuguuuuu	chr1:167933882-167934157(+)$1	275	189	228	15.7229
aauauuguuaugugugaauuugauccugucauuaugaug	chr11:5378281-5378517(-)$1	236	157	196	20.0145
AGUGUUAUAGAGAUUCAACACUCUGGUCUCUUUAAUAUU	chr2:183823959-183824204(-)$1	245	173	212	15.6080
ugucaaaggcauucuuuacuucuguuaaaguguuuuugg	chr6:147543169-147543400(+)$1	231	15	54	16.2217
aaucuccagacccugagcaaugugcuuacauacuggagg	chr10:65146235-65146488(-)$1	253	181	220	13.4140
agcugguuguagacauguggcauuauuucugaggccucu	chr1:93014644-93014897(-)$1	253	130	169	15.7313
aauauugucaugugugaauuugguccugucauuaugaug	chr2:169723658-169723904(-)$1	246	5	44	20.0145
gugguuuuugucacugguucuauuuaugugaugaauuac	chr1:246107056-246107283(-)$1	227	93	132	18.2660
guucacuaaugauuuggcucucuguccguuauuggugua	chr15:58322729-58322978(-)$1	249	11	50	14.7931
CCUUGCUUUGUGGGUGUUAUGGCACGGUCGUGGGGGCAA	chr5:1804076-1804344(+)$1	268	153	192	19.6722
AAAAGCAUUUUGGGUCUUGGUCUAGCCCCAAGGugacuc	chr10:52112322-52112603(-)$1	281	165	204	17.1998
ugcugaguuuuuaucauggaaagguguuggaauuugcaa	chr11:134067686-134067958(-)$1	272	206	245	18.0210
aguugacuguaagugugugaauuuauaucuggguucucu	chr7:91595841-91596085(+)$1	244	109	148	14.4941
gguguuggugucuuggcauuggggucugggcauuggugu	chr19:2104319-2104614(-)$1	295	81	120	21.8048
uauacuuguuccuucuaccuacuuagauuauaaauuauu	chr3:42856090-42856314(-)$1	224	40	79	14.2074
guucuaggagccuuuuagcagaaucugagauuuucuagg	chr6:45229464-45229711(-)$1	247	116	155	13.4174
UGACUUUCCCUCUCCUGUAGUCUCAGUUGUGGCAAUAGU	chr22:20093132-20093366(+)$1	234	160	199	16.9491
ugucaaauggauagauugcaaaaacuuucucccauucug	chr3:152085584-152085832(+)$1	248	132	171	13.4242
ggggccacuucugguucuggggugauuuacagucagugg	chr11:105314001-105314354(-)$1	353	268	307	17.3679
UUAAUAGAGAAAAACCUGAGGGUCUCCGUGUUUUUCCUG	chr1:225613999-225614223(-)$1	224	22	61	13.2437
auauguaccuucaaugccuaguuuguugaagguuuuuaa	chr7:64260694-64260918(+)$1	224	36	75	13.7605
GGGACUGUACUGGGAACUUUUGGCCCAGAUUGAGUUCUA	chr21:46292022-46292263(-)$1	241	118	157	12.8842
ugaagcuaucuggucaugggcucuucauuguugggaggu	chr6:2322781-2323036(+)$1	255	151	190	14.2464
uaccaugcuguuuugguuauuguaccccuguagcauagu	chr8:54984517-54984821(-)$1	304	241	280	16.3576
cacuuguuuguaaugacuugcuugucgugcugcuuucaa	chr5:142743504-142743791(-)$1	287	57	96	14.2008
GGUAGACUGGAGAAUAGCUGUCACUUGUCUUCAGGCGUA	chr1:228271854-228272119(+)$1	265	193	232	16.3735
uaagagauauuauuugguauuuuuccuguggugucuuuu	chr2:45750827-45751088(-)$1	261	52	91	15.2578
UGAUUUUUAACAUGUAGGGUAACUAGAGAUUUGAGAUCA	chr18:55799898-55800138(+)$1	240	194	233	15.0313
AUUAGGCAUAGAGACUUUUCCUUAAGAUCUGUGGCCUAA	chr13:95881631-95881931(-)$1	300	28	67	17.8218
uguagagaucuuuuaccuccuugguuaaauuuauuuuua	chr1:225120781-225121054(+)$1	273	49	88	15.5278
uaguuugaagucagguagugugauaccuccagcuuuguu	chr7:110890453-110890694(-)$1	241	134	173	14.3583
ucuccucuuccguuuucugaaagagauuuuguagaguca	chr4:88123757-88124011(-)$1	254	69	108	13.0413
gggauauuggccugaaauuuucuuuuuuuguugugucuc	chr8:100425154-100425405(+)$1	251	72	111	17.3350
accauuuauugaagaaauugcccuuucccugaugaguga	chr2:148725551-148725800(-)$1	249	158	197	18.3356
cauuguucaguucccaccuaugagugagaauaugcagug	chr19:12046677-12046918(+)$1	241	56	95	14.9721
GUUUUUGGAAGGUUAGUGUUAUAUAUCAGCUUCCAAGAA	chr16:89555314-89555565(-)$1	251	109	148	16.3635

#DB
)))(((((((((((((((....))))...))))))))))	chr13:95887746-95887981(-)$1	1	66	105	15.9109
(.(((.((((((((((((.....))))))))))))))).	chr16:24763808-24764035(+)$1	1	63	102	16.3994
((.((((((((((.((........)).)))))))))).)	chr1:90130889-90131142(+)$1	1	99	138	14.5120
(((.(..((((((((((......))))))))))..).))	chr3:33128942-33129189(-)$1	1	94	133	17.7748
((.(((.((((((((((......))).....))))))).	chrX:21969892-21970159(+)$1	1	108	147	15.1654
((((((((((..((((......)))).))))))))))))	chr22:20087186-20087457(+)$1	1	132	171	18.7871
(((((((.....(((((......)))))....)))))))	chr7:155461974-155462214(+)$1	1	181	220	16.1139
..((.(.(.((((.(((......))).)))).).)))..	chr1:155532349-155532628(-)$1	1	177	216	14.4301
((((((((((.((.(((...))).)).))))))))))))	chr2:158613714-158613952(-)$1	1	73	112	16.3461
)))(((((..((..(((......)))))..))))).(((	chr22:19389345-19389593(-)$1	1	172	211	13.7301
(((((((((((((.(((.......)))))))))))))..	chr19:34882819-34883024(+)$1	1	34	73	14.0403
((((((((((((..(((......)))...))))))))))	chr17:8365516-8365776(+)$1	1	158	197	22.7785
(.(((.(((((((((.(((....))).))))))))).))	chr16:384538-384823(-)$1	1	195	234	14.8088
((((((.((((((...(......)...))).))).))).	chr14:31115609-31115877(+)$1	1	14	53	16.5918
....((.((((((((((......))).))))))).))..	chr1:212946359-212946614(-)$1	1	11	50	14.3458
(..(((((((..(.(((......))).)....)))))))	chrX:48570038-48570274(-)$1	1	52	91	20.3759
))))((((((....(((......)))..)))))).((((	chr2:71637088-71637382(+)$1	1	144	183	15.1912
(..((((((((((.(((..(.....)..))).)))))))	chr1:167933882-167934157(+)$1	1	189	228	15.7229
((((((((.(((...((......))....))).))))))	chr11:5378281-5378517(-)$1	1	157	196	20.0145
(((((((.((((((.((......)))))))).)))))))	chr2:183823959-183824204(-)$1	1	173	212	15.6080
...((((((((((....((....))...)))))))))))	chr6:147543169-147543400(+)$1	1	15	54	16.2217
..(((((((....((((((...))))))....)))))))	chr10:65146235-65146488(-)$1	1	181	220	13.4140
((..((((.((((.(((......))).)))).)))).))	chr1:93014644-93014897(-)$1	1	130	169	15.7313
((((((((.(((...((......))....))).))))))	chr2:169723658-169723904(-)$1	1	5	44	20.0145
(((((((..((((((((......))).))))))))))))	chr1:246107056-246107283(-)$1	1	93	132	18.2660
(((((((((((((..(((.....))).))))))))))..	chr15:58322729-58322978(-)$1	1	11	50	14.7931
(((((((((.(((.(((......))).)))..)))))))	chr5:1804076-1804344(+)$1	1	153	192	19.6722
((.(((((((((((.((......)).))))))))).)).	chr10:52112322-52112603(-)$1	1	165	204	17.1998
(((.(((((((...(((......)))..)))))))))))	chr11:134067686-134067958(-)$1	1	206	245	18.0210
((..((((....(((((......)))))...))))))).	chr7:91595841-91596085(+)$1	1	109	148	14.4941
(((((((((((((.(((......))).))))))))))).	chr19:2104319-2104614(-)$1	1	81	120	21.8048
((...((((....((((......))))..))))..))).	chr3:42856090-42856314(-)$1	1	40	79	14.2074
.))(((((((..((((((......)))))).))))))).	chr6:45229464-45229711(-)$1	1	116	155	13.4174
(.(((...((.(..(((......)))..).))....)))	chr22:20093132-20093366(+)$1	1	160	199	16.9491
((.(((((((..(((..(......)..))).))))).))	chr3:152085584-152085832(+)$1	1	132	171	13.4242
(((((((((.(((..((......))....)))..)))))	chr11:105314001-105314354(-)$1	1	268	307	17.3679
(.(((((.((((((((.(((...))).).))))))))))	chr1:225613999-225614223(-)$1	1	22	61	13.2437
))).))(((((((((.........)))))))))((((((	chr7:64260694-64260918(+)$1	1	36	75	13.7605
((((((...(((((..(....).)))))....)))))))	chr21:46292022-46292263(-)$1	1	118	157	12.8842
(.((((..(((.(.((..(......)..)).).)))...	chr6:2322781-2323036(+)$1	1	151	190	14.2464
.((.((((((....(((......)))....)))))).))	chr8:54984517-54984821(-)$1	1	241	280	16.3576
..((((...((((((((......)))))..)))...)))	chr5:142743504-142743791(-)$1	1	57	96	14.2008
((((..(((((((..((......))..)))))))...))	chr1:228271854-228272119(+)$1	1	193	232	16.3735
.((((((((((((..((.......)).))))))))))))	chr2:45750827-45751088(-)$1	1	52	91	15.2578
(((((((.((..(.(((.....))).)..)).)))))))	chr18:55799898-55800138(+)$1	1	194	233	15.0313
((((((((((((..(((......))).))))).))))))	chr13:95881631-95881931(-)$1	1	28	67	17.8218
(.(((((((.(((.(((.....))).)))...)))))))	chr1:225120781-225121054(+)$1	1	49	88	15.5278
(((((((((((.(((((......)))))...)))))...	chr7:110890453-110890694(-)$1	1	134	173	14.3583
(...((((..((...(((.....)))...)).))))..)	chr4:88123757-88124011(-)$1	1	69	108	13.0413
(((((((..((..((((......))))..)).)))))))	chr8:100425154-100425405(+)$1	1	72	111	17.3350
(((((((((((..((((......))))..))))))))).	chr2:148725551-148725800(-)$1	1	158	197	18.3356
((((((...((((.(((......))).))))..))))))	chr19:12046677-12046918(+)$1	1	56	95	14.9721
.((((((((((.(..((((...)))).).))))))))))	chr16:89555314-89555565(-)$1	1	109	148	16.3635

#PSSM
d : 0.15	g : 0.15	e : 0.11	c : 0.11	= : 0.09	b : 0.07	f : 0.05	i : 0.05	! : 0.03	[ : 0.03	$ : 0.01	) : 0.01	" : 0.01	G : 0.01	] : 0.01	% : 0.01	
g : 0.15	= : 0.13	[ : 0.11	d : 0.09	e : 0.07	c : 0.07	! : 0.07	b : 0.07	f : 0.05	i : 0.05	" : 0.03	$ : 0.01	) : 0.01	G : 0.01	
g : 0.18	= : 0.15	d : 0.11	c : 0.07	[ : 0.07	! : 0.07	i : 0.07	b : 0.05	f : 0.05	" : 0.05	e : 0.03	) : 0.01	G : 0.01	
= : 0.26	g : 0.22	c : 0.09	i : 0.07	[ : 0.05	b : 0.05	d : 0.05	e : 0.03	! : 0.03	" : 0.03	) : 0.01	] : 0.01	f : 0.01	
= : 0.26	g : 0.22	c : 0.09	d : 0.09	b : 0.07	i : 0.07	f : 0.05	e : 0.03	a : 0.01	[ : 0.01	" : 0.01	! : 0.01	
= : 0.26	g : 0.22	d : 0.11	i : 0.09	e : 0.05	f : 0.05	[ : 0.03	! : 0.03	c : 0.03	b : 0.03	a : 0.01	" : 0.01	
= : 0.28	g : 0.20	i : 0.13	[ : 0.07	e : 0.07	d : 0.07	" : 0.07	! : 0.03	f : 0.03	
= : 0.30	g : 0.16	i : 0.09	e : 0.07	d : 0.07	" : 0.07	[ : 0.05	! : 0.05	f : 0.03	$ : 0.01	a : 0.01	c : 0.01	
= : 0.26	g : 0.18	i : 0.09	[ : 0.07	! : 0.07	f : 0.05	e : 0.05	" : 0.05	c : 0.03	b : 0.03	$ : 0.01	# : 0.01	d : 0.01	
= : 0.26	g : 0.13	c : 0.09	e : 0.09	i : 0.07	d : 0.05	f : 0.05	# : 0.05	[ : 0.05	b : 0.05	! : 0.03	$ : 0.01	
= : 0.22	c : 0.15	g : 0.09	! : 0.09	# : 0.09	i : 0.07	e : 0.07	d : 0.05	b : 0.05	[ : 0.03	$ : 0.01	f : 0.01	
= : 0.20	! : 0.13	c : 0.13	# : 0.09	g : 0.07	d : 0.05	b : 0.05	i : 0.05	e : 0.05	[ : 0.05	$ : 0.01	f : 0.01	" : 0.01	a : 0.01	
= : 0.18	e : 0.11	! : 0.11	c : 0.09	g : 0.07	d : 0.07	a : 0.07	# : 0.07	" : 0.07	i : 0.05	f : 0.03	b : 0.01	
[ : 0.24	! : 0.16	e : 0.11	" : 0.09	d : 0.07	= : 0.05	g : 0.05	i : 0.05	# : 0.05	f : 0.05	c : 0.01	
c : 0.41	! : 0.11	d : 0.09	e : 0.07	" : 0.07	= : 0.03	b : 0.03	i : 0.03	[ : 0.03	f : 0.03	# : 0.01	g : 0.01	
c : 0.43	b : 0.16	d : 0.11	e : 0.07	= : 0.03	f : 0.03	! : 0.03	[ : 0.01	" : 0.01	# : 0.01	a : 0.01	r : 0.01	
c : 0.45	b : 0.13	d : 0.09	e : 0.07	= : 0.03	a : 0.03	f : 0.03	! : 0.03	q : 0.01	o : 0.01	# : 0.01	[ : 0.01	r : 0.01	
o : 0.60	c : 0.07	d : 0.03	p : 0.03	! : 0.03	f : 0.03	n : 0.03	= : 0.01	q : 0.01	l : 0.01	b : 0.01	a : 0.01	r : 0.01	m : 0.01	
o : 0.64	n : 0.09	m : 0.03	p : 0.03	c : 0.03	q : 0.01	l : 0.01	! : 0.01	b : 0.01	f : 0.01	r : 0.01	a : 0.01	d : 0.01	
o : 0.66	n : 0.09	m : 0.07	l : 0.05	p : 0.03	q : 0.01	a : 0.01	c : 0.01	r : 0.01	
o : 0.66	n : 0.11	m : 0.07	l : 0.05	p : 0.03	q : 0.01	c : 0.01	r : 0.01	
o : 0.66	n : 0.11	m : 0.05	l : 0.05	p : 0.03	q : 0.01	c : 0.01	r : 0.01	a : 0.01	
o : 0.64	n : 0.07	d : 0.05	c : 0.05	p : 0.03	m : 0.03	q : 0.01	f : 0.01	l : 0.01	r : 0.01	] : 0.01	
c : 0.41	b : 0.13	d : 0.11	e : 0.09	o : 0.05	= : 0.03	p : 0.03	q : 0.01	] : 0.01	a : 0.01	n : 0.01	f : 0.01	r : 0.01	
c : 0.43	b : 0.18	d : 0.11	e : 0.09	= : 0.03	f : 0.03	3 : 0.01	n : 0.01	a : 0.01	i : 0.01	o : 0.01	
c : 0.39	d : 0.11	e : 0.09	b : 0.05	4 : 0.05	f : 0.05	] : 0.05	= : 0.03	3 : 0.03	a : 0.03	2 : 0.03	i : 0.01	
] : 0.32	2 : 0.13	3 : 0.09	e : 0.09	4 : 0.07	f : 0.05	d : 0.05	= : 0.03	c : 0.03	i : 0.03	5 : 0.01	b : 0.01	a : 0.01	
= : 0.16	2 : 0.16	e : 0.13	3 : 0.07	c : 0.07	4 : 0.07	d : 0.05	i : 0.05	a : 0.05	f : 0.05	g : 0.03	5 : 0.01	b : 0.01	
= : 0.18	4 : 0.15	2 : 0.11	3 : 0.09	c : 0.09	d : 0.05	i : 0.05	g : 0.05	f : 0.05	e : 0.03	] : 0.03	5 : 0.01	a : 0.01	b : 0.01	
= : 0.24	c : 0.13	4 : 0.09	d : 0.07	i : 0.07	g : 0.07	b : 0.07	f : 0.05	3 : 0.05	2 : 0.03	e : 0.03	5 : 0.01	] : 0.01	
= : 0.24	c : 0.09	4 : 0.07	d : 0.07	i : 0.07	] : 0.07	g : 0.07	b : 0.07	e : 0.05	f : 0.05	3 : 0.05	5 : 0.01	2 : 0.01	
= : 0.24	] : 0.13	g : 0.11	e : 0.09	c : 0.09	4 : 0.07	i : 0.07	f : 0.03	2 : 0.03	d : 0.03	b : 0.01	a : 0.01	3 : 0.01	
= : 0.26	g : 0.24	i : 0.13	] : 0.07	d : 0.07	e : 0.05	c : 0.03	f : 0.03	2 : 0.03	a : 0.01	4 : 0.01	
= : 0.28	g : 0.26	i : 0.13	2 : 0.05	e : 0.05	f : 0.05	d : 0.05	c : 0.03	] : 0.01	4 : 0.01	3 : 0.01	
= : 0.28	g : 0.24	i : 0.13	e : 0.05	d : 0.05	2 : 0.03	] : 0.03	f : 0.03	3 : 0.03	a : 0.01	: : 0.01	4 : 0.01	c : 0.01	
= : 0.26	g : 0.22	i : 0.11	c : 0.09	e : 0.05	d : 0.05	b : 0.03	f : 0.03	3 : 0.03	a : 0.01	: : 0.01	] : 0.01	4 : 0.01	
= : 0.26	g : 0.20	c : 0.09	] : 0.09	i : 0.09	b : 0.05	e : 0.05	d : 0.03	3 : 0.03	> : 0.01	2 : 0.01	f : 0.01	
g : 0.22	= : 0.20	c : 0.11	i : 0.09	d : 0.07	e : 0.05	b : 0.05	0 : 0.03	] : 0.01	8 : 0.01	: : 0.01	3 : 0.01	> : 0.01	2 : 0.01	f : 0.01	
g : 0.20	= : 0.16	3 : 0.09	e : 0.09	d : 0.07	i : 0.07	] : 0.05	0 : 0.03	c : 0.03	: : 0.03	b : 0.03	8 : 0.01	2 : 0.01	> : 0.01	f : 0.01	

#score	852.7599778981472
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_transcript_m3_run1.txt

#BEAR
gggggooooooggggggg	chr11:62620486-62620698(-)$1	212	97	115	9.5863
======mmmm========	chr6:133100380-133100654(-)$1	274	51	69	10.9741
ggggggmmmmggggggg2	chr17:57915207-57915446(+)$1	239	19	37	10.1799
a!!cccmmmmccc22a]d	chr9:4860023-4860270(+)$1	247	136	154	8.6830
=======lll========	chr17:55335511-55335790(+)$1	279	16	34	9.8123
###cccmmmmccc22eee	chr5:87516369-87516647(-)$1	278	206	224	8.3348
ggggggmmmmggggggg5	chr1:51912815-51913055(-)$1	240	117	135	9.6197
"""cccmmmmccc333cc	chrX:110931005-110931257(+)$1	252	140	158	9.2793
ggggggmmmmgggggggc	chr17:62498209-62498450(-)$1	241	117	135	10.3499
ggggooooooggggggg:	chr1:155893338-155893590(-)$1	252	12	30	8.2488
gggggooooooggggggg	chr11:9309172-9309416(-)$1	244	99	117	9.5863
ccc!!ammmma]ccc22d	chr14:35871908-35872179(-)$1	271	74	92	7.8665
d!!cccmmmmccc]dddd	chr7:65225293-65225556(+)$1	263	219	237	8.1935
gggggammmma]gggggg	chr7:106836174-106836427(+)$1	253	122	140	10.2566
iiiiiimmmmiiiiiiii	chr4:79791001-79791236(+)$1	235	16	34	10.6280
======mmmm========	chr3:42671521-42671762(+)$1	241	115	133	10.9741
ggggggmmmmggggggg4	chr3:141272597-141272840(+)$1	243	38	56	10.3417
"""cccmmmmcccdddd]	chr3:15137644-15137909(-)$1	265	185	203	8.1492
ggggggmmmmggggggg:	chr6:122772758-122773006(-)$1	248	67	85	9.5008
=======lll========	chr4:79771964-79772210(+)$1	246	175	193	9.8123
gggggooooooggggggg	chr3:186505480-186505727(+)$1	247	15	33	9.5863
gggggooooooggggggg	chrX:13347329-13347551(+)$1	222	97	115	9.5863
iiiiiooooooiiiiiii	chr12:46764263-46764535(-)$1	272	20	38	9.6525
ggggggmmmmgggggggB	chr22:38881669-38881922(-)$1	253	223	241	9.5019
=======lll========	chr3:160131145-160131399(+)$1	254	44	62	9.8123
gggggooooooggggggg	chr22:29682793-29683057(+)$1	264	82	100	9.5863
iiiiiimmmmiiiiiiii	chr9:95014023-95014276(-)$1	253	98	116	10.6280
ggggggmmmmggggggg:	chr20:34214165-34214414(-)$1	249	179	197	9.5008
g!!cccmmmmccc333gg	chr11:62620028-62620266(-)$1	238	168	186	9.8950
f!!cccmmmmcccfffff	chr7:32919409-32919664(-)$1	255	210	228	8.4979
ggggggmmmmggggggg]	chr16:31202610-31202857(+)$1	247	152	170	10.4429
ee[cccmmmmccceeeee	chr5:133725803-133726073(+)$1	270	49	67	8.0147
======mmmm========	chr6:133093249-133093502(-)$1	253	230	248	10.9741
iiiiiimmmmiiiiiiii	chr17:74730906-74731135(-)$1	229	203	221	10.6280
[a[cccmmmmccc]a22d	chr4:24538671-24538888(-)$1	217	4	22	8.5239
gggggglllggggggg]e	chr6:47544153-47544418(+)$1	265	33	51	8.4330
iiiiiimmmmiiiiiiii	chr3:37314919-37315172(+)$1	253	188	206	10.6280
iiiiiimmmmiiiiiiii	chr12:123078727-123078976(+)$1	249	223	241	10.6280
gggggooooooggggggg	chr10:1038319-1038575(+)$1	256	60	78	9.5863
fffcccmmmmccc22fff	chr12:62912291-62912559(+)$1	268	193	211	7.8741
b!!cccmmmmccc333bb	chr21:34821044-34821305(-)$1	261	7	25	8.6345
ggggggmmmmgggggggd	chr3:121209109-121209369(-)$1	260	71	89	10.2353
ggggggglllggggggg4	chr11:111728316-111728575(-)$1	259	40	58	8.7410
=====oooooo=======	chr4:6825800-6826047(+)$1	247	37	55	9.8943
gggggooooooggggggg	chr12:133237693-133237966(-)$1	273	89	107	9.5863
gggggooooooggggggg	chr11:9309216-9309455(-)$1	239	138	156	9.5863
ggggggmmmmggggggg:	chr14:23795140-23795366(+)$1	226	168	186	9.5008
gg[aooooooa]gggggg	chr1:67405591-67405855(+)$1	264	61	79	8.8035
"""cccmmmmccc4444e	chr11:64540888-64541106(-)$1	218	126	144	8.4343

#otherMatches

#Seq PSSM
UCUUGAUUUUGCAGGAAA	chr11:62620486-62620698(-)$1	212	97	115	9.5863
AAAAUUAAGAGAUUUUAA	chr6:133100380-133100654(-)$1	274	51	69	10.9741
AUUGGUUCAAACCAGUUC	chr17:57915207-57915446(+)$1	239	19	37	10.1799
AGAUUAUGUUUAAAAUUG	chr9:4860023-4860270(+)$1	247	136	154	8.6830
GGGGCAACUUUUGCUCCU	chr17:55335511-55335790(+)$1	279	16	34	9.8123
AAGCCUACACAGGAAAUG	chr5:87516369-87516647(-)$1	278	206	224	8.3348
CAUUUUGAUUGAGAUGUC	chr1:51912815-51913055(-)$1	240	117	135	9.6197
UUAUCAACACUGAAAUGU	chrX:110931005-110931257(+)$1	252	140	158	9.2793
CCAUGGGUAUCCAUGGUG	chr17:62498209-62498450(-)$1	241	117	135	10.3499
UAUUAAUGUAGAUAUGUA	chr1:155893338-155893590(-)$1	252	12	30	8.2488
UCCUAUUUAGUUGGGAGA	chr11:9309172-9309416(-)$1	244	99	117	9.5863
UGAAACAGGUGGUUAUAC	chr14:35871908-35872179(-)$1	271	74	92	7.8665
AUUUGCUGAUGUGUUGCU	chr7:65225293-65225556(+)$1	263	219	237	8.1935
GGAUUCUUCUGCAGUUUA	chr7:106836174-106836427(+)$1	253	122	140	10.2566
AUAGUUAUAAAACUAUUU	chr4:79791001-79791236(+)$1	235	16	34	10.6280
AGGAGGUGCUUUUCUUAU	chr3:42671521-42671762(+)$1	241	115	133	10.9741
AGAUAAUGUUUUAUCUUG	chr3:141272597-141272840(+)$1	243	38	56	10.3417
UUAAGCUAAUGCUGCGGG	chr3:15137644-15137909(-)$1	265	185	203	8.1492
auauauauauauauauau	chr6:122772758-122773006(-)$1	248	67	85	9.5008
UGCUAUCUGUGAUGGCAA	chr4:79771964-79772210(+)$1	246	175	193	9.8123
UAUACCACUUAGUAUAGU	chr3:186505480-186505727(+)$1	247	15	33	9.5863
UUCGUGCUUGAGCGGAGG	chrX:13347329-13347551(+)$1	222	97	115	9.5863
UAAAAGAAUAGUUUUACU	chr12:46764263-46764535(-)$1	272	20	38	9.6525
uauauauauauauauaua	chr22:38881669-38881922(-)$1	253	223	241	9.5019
AAAUUGUUAUACAGUUUU	chr3:160131145-160131399(+)$1	254	44	62	9.8123
AAAAGCUUUUUUUUUUUU	chr22:29682793-29683057(+)$1	264	82	100	9.5863
UUACUCAUUAGGGUGAAA	chr9:95014023-95014276(-)$1	253	98	116	10.6280
GGCCCAGGGUUGGGCCCC	chr20:34214165-34214414(-)$1	249	179	197	9.5008
GCUGUUGAAAAGCUUUCU	chr11:62620028-62620266(-)$1	238	168	186	9.8950
AAUGUCUGCAGACUGUGU	chr7:32919409-32919664(-)$1	255	210	228	8.4979
GCCUGGCUCCCCAGGUUC	chr16:31202610-31202857(+)$1	247	152	170	10.4429
UCUGACCCCUGUUGGUAU	chr5:133725803-133726073(+)$1	270	49	67	8.0147
GGGUGAGUAGUCAUUUAA	chr6:133093249-133093502(-)$1	253	230	248	10.9741
GAUUGGUAACCUAAUUUG	chr17:74730906-74731135(-)$1	229	203	221	10.6280
UGACCUAGCUAGGCCUUG	chr4:24538671-24538888(-)$1	217	4	22	8.5239
AAUGGAAACUUUGUUUAA	chr6:47544153-47544418(+)$1	265	33	51	8.4330
UUAUUUUAGAAAAUAACA	chr3:37314919-37315172(+)$1	253	188	206	10.6280
ACGGUAUUUUUGCUGUUA	chr12:123078727-123078976(+)$1	249	223	241	10.6280
AAAAGUAGACCCUUUUGA	chr10:1038319-1038575(+)$1	256	60	78	9.5863
AAGAGGAAGGCCUGUUUU	chr12:62912291-62912559(+)$1	268	193	211	7.8741
UGAAGGUUUCCCUGAAGA	chr21:34821044-34821305(-)$1	261	7	25	8.6345
aaugaaugaauUCAUUUC	chr3:121209109-121209369(-)$1	260	71	89	10.2353
AUCAGUUUUUAAUUGAUA	chr11:111728316-111728575(-)$1	259	40	58	8.7410
UUUUUUUCCUCAAAAGGU	chr4:6825800-6826047(+)$1	247	37	55	9.8943
UUUGCUGCCUCGUGGAUG	chr12:133237693-133237966(-)$1	273	89	107	9.5863
UCCUAUUUAGUUGGGAGA	chr11:9309216-9309455(-)$1	239	138	156	9.5863
UUUCCAGGGGUGGGAAUU	chr14:23795140-23795366(+)$1	226	168	186	9.5008
GUUUGUGAAGAUACAUUA	chr1:67405591-67405855(+)$1	264	61	79	8.8035
CAGUGCAACUGCAGAUAG	chr11:64540888-64541106(-)$1	218	126	144	8.4343

#DB
(((((......)))))))	chr11:62620486-62620698(-)$1	1	97	115	9.5863
((((((....))))))))	chr6:133100380-133100654(-)$1	1	51	69	10.9741
((((((....))))))).	chr17:57915207-57915446(+)$1	1	19	37	10.1799
(..(((....)))..).)	chr9:4860023-4860270(+)$1	1	136	154	8.6830
(((((((...))))))))	chr17:55335511-55335790(+)$1	1	16	34	9.8123
...(((....)))..)))	chr5:87516369-87516647(-)$1	1	206	224	8.3348
((((((....))))))).	chr1:51912815-51913055(-)$1	1	117	135	9.6197
...(((....)))...))	chrX:110931005-110931257(+)$1	1	140	158	9.2793
((((((....)))))))(	chr17:62498209-62498450(-)$1	1	117	135	10.3499
((((......))))))).	chr1:155893338-155893590(-)$1	1	12	30	8.2488
(((((......)))))))	chr11:9309172-9309416(-)$1	1	99	117	9.5863
(((..(....).)))..)	chr14:35871908-35872179(-)$1	1	74	92	7.8665
(..(((....))).))))	chr7:65225293-65225556(+)$1	1	219	237	8.1935
((((((....).))))))	chr7:106836174-106836427(+)$1	1	122	140	10.2566
((((((....))))))))	chr4:79791001-79791236(+)$1	1	16	34	10.6280
((((((....))))))))	chr3:42671521-42671762(+)$1	1	115	133	10.9741
((((((....))))))).	chr3:141272597-141272840(+)$1	1	38	56	10.3417
...(((....))))))).	chr3:15137644-15137909(-)$1	1	185	203	8.1492
((((((....))))))).	chr6:122772758-122773006(-)$1	1	67	85	9.5008
(((((((...))))))))	chr4:79771964-79772210(+)$1	1	175	193	9.8123
(((((......)))))))	chr3:186505480-186505727(+)$1	1	15	33	9.5863
(((((......)))))))	chrX:13347329-13347551(+)$1	1	97	115	9.5863
(((((......)))))))	chr12:46764263-46764535(-)$1	1	20	38	9.6525
((((((....))))))))	chr22:38881669-38881922(-)$1	1	223	241	9.5019
(((((((...))))))))	chr3:160131145-160131399(+)$1	1	44	62	9.8123
(((((......)))))))	chr22:29682793-29683057(+)$1	1	82	100	9.5863
((((((....))))))))	chr9:95014023-95014276(-)$1	1	98	116	10.6280
((((((....))))))).	chr20:34214165-34214414(-)$1	1	179	197	9.5008
(..(((....)))...))	chr11:62620028-62620266(-)$1	1	168	186	9.8950
(..(((....))))))))	chr7:32919409-32919664(-)$1	1	210	228	8.4979
((((((....))))))).	chr16:31202610-31202857(+)$1	1	152	170	10.4429
((.(((....))))))))	chr5:133725803-133726073(+)$1	1	49	67	8.0147
((((((....))))))))	chr6:133093249-133093502(-)$1	1	230	248	10.9741
((((((....))))))))	chr17:74730906-74731135(-)$1	1	203	221	10.6280
.(.(((....))).)..)	chr4:24538671-24538888(-)$1	1	4	22	8.5239
((((((...))))))).)	chr6:47544153-47544418(+)$1	1	33	51	8.4330
((((((....))))))))	chr3:37314919-37315172(+)$1	1	188	206	10.6280
((((((....))))))))	chr12:123078727-123078976(+)$1	1	223	241	10.6280
(((((......)))))))	chr10:1038319-1038575(+)$1	1	60	78	9.5863
((((((....)))..)))	chr12:62912291-62912559(+)$1	1	193	211	7.8741
(..(((....)))...))	chr21:34821044-34821305(-)$1	1	7	25	8.6345
((((((....)))))))(	chr3:121209109-121209369(-)$1	1	71	89	10.2353
(((((((...))))))).	chr11:111728316-111728575(-)$1	1	40	58	8.7410
(((((......)))))))	chr4:6825800-6826047(+)$1	1	37	55	9.8943
(((((......)))))))	chr12:133237693-133237966(-)$1	1	89	107	9.5863
(((((......)))))))	chr11:9309216-9309455(-)$1	1	138	156	9.5863
((((((....))))))).	chr14:23795140-23795366(+)$1	1	168	186	9.5008
((.(......).))))))	chr1:67405591-67405855(+)$1	1	61	79	8.8035
...(((....)))....)	chr11:64540888-64541106(-)$1	1	126	144	8.4343

#PSSM
g : 0.48	= : 0.14	i : 0.12	" : 0.06	f : 0.04	a : 0.02	# : 0.02	c : 0.02	d : 0.02	e : 0.02	[ : 0.02	b : 0.02	
g : 0.46	= : 0.14	i : 0.12	! : 0.10	" : 0.06	# : 0.02	c : 0.02	e : 0.02	a : 0.02	f : 0.02	
g : 0.44	= : 0.14	i : 0.12	! : 0.10	" : 0.06	[ : 0.06	# : 0.02	c : 0.02	f : 0.02	
g : 0.44	c : 0.24	= : 0.14	i : 0.12	! : 0.02	a : 0.02	
g : 0.42	c : 0.24	= : 0.14	i : 0.12	o : 0.04	! : 0.02	
o : 0.24	g : 0.24	c : 0.24	= : 0.12	i : 0.10	a : 0.04	
m : 0.65	o : 0.24	= : 0.06	l : 0.02	g : 0.02	
m : 0.65	o : 0.24	l : 0.10	
m : 0.65	o : 0.24	l : 0.10	
m : 0.65	o : 0.24	l : 0.08	g : 0.02	
g : 0.26	c : 0.24	o : 0.20	= : 0.12	i : 0.10	a : 0.06	
g : 0.42	c : 0.24	= : 0.14	i : 0.12	] : 0.06	
g : 0.46	c : 0.26	= : 0.14	i : 0.12	
g : 0.46	= : 0.14	i : 0.12	2 : 0.06	3 : 0.06	] : 0.04	c : 0.02	d : 0.02	f : 0.02	e : 0.02	4 : 0.02	
g : 0.46	= : 0.14	i : 0.12	2 : 0.06	3 : 0.06	d : 0.04	c : 0.02	f : 0.02	e : 0.02	a : 0.02	4 : 0.02	
g : 0.46	= : 0.14	i : 0.12	3 : 0.06	e : 0.04	2 : 0.04	d : 0.04	f : 0.04	a : 0.02	4 : 0.02	
g : 0.46	= : 0.14	i : 0.12	] : 0.04	e : 0.04	2 : 0.04	d : 0.04	f : 0.04	c : 0.02	b : 0.02	4 : 0.02	
g : 0.22	= : 0.14	i : 0.12	d : 0.10	e : 0.08	: : 0.08	c : 0.04	4 : 0.04	] : 0.04	f : 0.04	2 : 0.02	5 : 0.02	B : 0.02	b : 0.02	

#score	465.776107697192
#seq	49
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_transcript_m3_run2.txt

#BEAR
gggggqqqqqqqqgggg	chr3:51426573-51426826(+)$1	253	170	187	13.8219
eeeeeqqqqqqqqeeee	chr1:143450595-143450842(-)$1	247	140	157	14.5097
eeeeeqqqqqqqqeeee	chr8:30916691-30916964(+)$1	273	195	212	14.5097
ff[bbqqqqqqqqbb]f	chr15:52176721-52176938(+)$1	217	170	187	12.5173
fffffqqqqqqqqffff	chr6:32945309-32945540(+)$1	231	151	168	12.9278
cccccqqqqqqqqccc]	chr19:39334312-39334552(-)$1	240	197	214	13.7177
e[cccqqqqqqqqccce	chr2:198256844-198257107(-)$1	263	226	243	14.0589
eeeeeqqqqqqqqeeee	chr2:152276823-152277064(+)$1	241	16	33	14.5097
gggggqqqqqqqqgggg	chr6:42630231-42630543(+)$1	312	81	98	13.8219
=====qqqqqqqq====	chr17:80107434-80107702(-)$1	268	121	138	13.9847
eeeeeqqqqqqqqeeee	chr1:236381355-236381612(-)$1	257	228	245	14.5097
eeeeeqqqqqqqqeeee	chr16:89954072-89954326(+)$1	254	68	85	14.5097
ffffaqqqqqqqqa]ff	chr19:17430949-17431192(+)$1	243	102	119	12.9911
%ddddqqqqqqqqdddd	chr15:29992601-29992872(-)$1	271	124	141	13.0991
!ddddqqqqqqqqdddd	chr1:111490118-111490367(-)$1	249	179	196	13.8613
iiibbqqqqqqqqbb22	chr1:23697621-23697882(+)$1	261	219	236	12.3995
fffffqqqqqqqqffff	chr6:7108933-7109177(+)$1	244	6	23	12.9278
gggggqqqqqqqqgggg	chr19:15442835-15443109(-)$1	274	217	234	13.8219
eddddqqqqqqqqdddd	chr12:57914060-57914271(-)$1	211	124	141	13.8630
hhh[aqqqqqqqqahhh	chr6:151328850-151329157(+)$1	307	102	119	12.5911
bbcccqqqqqqqqccc]	chr1:160247775-160248082(-)$1	307	222	239	13.1739
eeeeeqqqqqqqqeeee	chr19:10908150-10908377(+)$1	227	0	17	14.5097
gggggqqqqqqqqgggg	chr5:179156804-179157017(+)$1	213	131	148	13.8219
eeeeeqqqqqqqqeeee	chr9:96941559-96941825(+)$1	266	240	257	14.5097
:ddddqqqqqqqqdddd	chr11:65199433-65199651(+)$1	218	182	199	12.7523
iiiiiqqqqqqqqiiii	chr7:75957975-75958213(-)$1	238	14	31	13.7837
iiiiiqqqqqqqqiiii	chr7:26230856-26231097(-)$1	241	172	189	13.7837
fffffqqqqqqqqffff	chr5:172461425-172461724(+)$1	299	225	242	12.9278
ee[bbqqqqqqqqbb]e	chr3:187457760-187458047(-)$1	287	139	156	13.0881
gggggqqqqqqqqgggg	chr18:47918838-47919068(+)$1	230	16	33	13.8219
"""bbqqqqqqqqbb44	chr14:69618209-69618463(-)$1	254	74	91	12.4676
!!cccqqqqqqqqccc2	chr7:39746119-39746360(+)$1	241	103	120	13.7505
eeeeeqqqqqqqqeeee	chr2:20493911-20494188(-)$1	277	36	53	14.5097
gggggqqqqqqqqgggg	chr1:36521511-36521783(+)$1	272	157	174	13.8219
:ddddqqqqqqqqdddd	chr9:33111083-33111345(-)$1	262	144	161	12.7523
$ddddqqqqqqqqdddd	chr2:65496340-65496586(+)$1	246	62	79	13.5356
eeeeeqqqqqqqqeeee	chr14:24633259-24633531(+)$1	272	9	26	14.5097
"""bbqqqqqqqqbb44	chr3:156876467-156876723(-)$1	256	48	65	12.4676
eeeeeqqqqqqqqeeee	chr19:57804773-57805030(+)$1	257	201	218	14.5097
f[cccqqqqqqqqccc]	chr17:26910559-26910868(-)$1	309	161	178	13.8391
:ddddqqqqqqqqdddd	chr3:23848841-23849094(+)$1	253	181	198	12.7523
c[cccqqqqqqqqccc]	chr6:4777341-4777619(+)$1	278	126	143	13.8436
[ddddqqqqqqqqdddd	chr9:79000637-79000865(-)$1	228	94	111	13.8560
!!cccqqqqqqqqccc]	chr12:54678495-54678760(+)$1	265	17	34	13.9996
eeeeeqqqqqqqqeeee	chr16:21513580-21513846(-)$1	266	114	131	14.5097
[ddddqqqqqqqqdddd	chr22:22329778-22330033(-)$1	255	54	71	13.8560
eeeeeqqqqqqqqeeee	chr8:103661486-103661756(-)$1	270	135	152	14.5097
cddddqqqqqqqqdddd	chr22:50020478-50020714(-)$1	236	40	57	13.6956
c[cccqqqqqqqqccc5	chr18:3452438-3452679(+)$1	241	13	30	12.9371
!ddddqqqqqqqqdddd	chr7:63808134-63808389(+)$1	255	197	214	13.8613
eeeeeqqqqqqqqeeee	chr1:242013822-242014082(+)$1	260	123	140	14.5097
eeeeeqqqqqqqqeeee	chr1:93827091-93827368(+)$1	277	96	113	14.5097
eecccqqqqqqqqccc]	chr5:130814995-130815266(-)$1	271	87	104	14.0649
fffffqqqqqqqqffff	chr5:133492666-133492930(-)$1	264	235	252	12.9278
=====qqqqqqqq====	chr17:55761724-55761978(+)$1	254	197	214	13.9847
eeeeeqqqqqqqqeeee	chr17:56166515-56166767(+)$1	252	74	91	14.5097
eeeeeqqqqqqqqeeee	chr12:98928087-98928350(+)$1	263	57	74	14.5097
eddddqqqqqqqqdddd	chr8:90996538-90996815(-)$1	277	197	214	13.8630
ggcccqqqqqqqqccc6	chr6:31785421-31785667(+)$1	246	15	32	13.3150
[ddddqqqqqqqqdddd	chr15:93445292-93445540(+)$1	248	161	178	13.8560
eeeeeqqqqqqqqeeee	chr11:65192495-65192730(+)$1	235	73	90	14.5097
eeeeeqqqqqqqqeeee	chr16:21526814-21527064(-)$1	250	158	175	14.5097
eeeeeqqqqqqqqeeee	chr19:34718635-34718957(+)$1	322	37	54	14.5097
eddddqqqqqqqqdddd	chr2:65496164-65496431(+)$1	267	45	62	13.8630
ggg[aqqqqqqqqa]gg	chr12:53565461-53565725(-)$1	264	149	166	13.5468
eeeeeqqqqqqqqeeee	chr2:152279737-152279987(+)$1	250	70	87	14.5097
===bbqqqqqqqqbb]=	chr2:71592763-71593013(+)$1	250	27	44	12.9460
iiiiiqqqqqqqqiiii	chr7:150028498-150028734(+)$1	236	91	108	13.7837
!!cccqqqqqqqqccc2	chr18:209922-210169(+)$1	247	79	96	13.7505

#otherMatches

#Seq PSSM
UUUUUAUUAAAGAAAAA	chr3:51426573-51426826(+)$1	253	170	187	13.8219
guggcuguguaaugcug	chr1:143450595-143450842(-)$1	247	140	157	14.5097
AUAGAUAAUUAUUUCUA	chr8:30916691-30916964(+)$1	273	195	212	14.5097
cuggcuuuauugugugg	chr15:52176721-52176938(+)$1	217	170	187	12.5173
GCUAUAUCACUUGGUGG	chr6:32945309-32945540(+)$1	231	151	168	12.9278
GGGUCAGCACUUGGACA	chr19:39334312-39334552(-)$1	240	197	214	13.7177
AUAACCUGUCUUUGUUU	chr2:198256844-198257107(-)$1	263	226	243	14.0589
UUGCUUCAGAAACAGCA	chr2:152276823-152277064(+)$1	241	16	33	14.5097
AAGGGUAAUGUUGUCUU	chr6:42630231-42630543(+)$1	312	81	98	13.8219
GGGCUCUGGACGCAGCC	chr17:80107434-80107702(-)$1	268	121	138	13.9847
AAUGCUUUUUAAUGUGU	chr1:236381355-236381612(-)$1	257	228	245	14.5097
AGCUGCAUUCUCACAGC	chr16:89954072-89954326(+)$1	254	68	85	14.5097
UGGACUAGUGCGUGCUC	chr19:17430949-17431192(+)$1	243	102	119	12.9911
UGUAUUCUCUCCUGUAC	chr15:29992601-29992872(-)$1	271	124	141	13.0991
CAGCUCCAAACUUAGCU	chr1:111490118-111490367(-)$1	249	179	196	13.8613
GGGGCUUCCUGUUGCAG	chr1:23697621-23697882(+)$1	261	219	236	12.3995
CCGGGGGUGCCUGCCCG	chr6:7108933-7109177(+)$1	244	6	23	12.9278
CCGUUGGUGUCGGGGCG	chr19:15442835-15443109(-)$1	274	217	234	13.8219
CGUCCGCUCUUUAGGAU	chr12:57914060-57914271(-)$1	211	124	141	13.8630
UUGACCACUACAAGUAA	chr6:151328850-151329157(+)$1	307	102	119	12.5911
AAGCAAAUUCACAUGCA	chr1:160247775-160248082(-)$1	307	222	239	13.1739
UGGUCUCAGAGCUGGCC	chr19:10908150-10908377(+)$1	227	0	17	14.5097
UGUGUCAUAAAUUACAC	chr5:179156804-179157017(+)$1	213	131	148	13.8219
AAAAGUUAUACAUCUUU	chr9:96941559-96941825(+)$1	266	240	257	14.5097
uaguauaaugauuuacu	chr11:65199433-65199651(+)$1	218	182	199	12.7523
UGGUUUUGCUGUUGAUC	chr7:75957975-75958213(-)$1	238	14	31	13.7837
GUUUAACAAUUUAUAAA	chr7:26230856-26231097(-)$1	241	172	189	13.7837
AGAGAUACGUUACUCUC	chr5:172461425-172461724(+)$1	299	225	242	12.9278
UGGCGGCCCCUAGCGGC	chr3:187457760-187458047(-)$1	287	139	156	13.0881
cagcccccugaauggcu	chr18:47918838-47919068(+)$1	230	16	33	13.8219
GGGCAGGGGCGGGUGGG	chr14:69618209-69618463(-)$1	254	74	91	12.4676
UUGGUCUUCUACUGCCU	chr7:39746119-39746360(+)$1	241	103	120	13.7505
GCCUGGACAGCAACAGG	chr2:20493911-20494188(-)$1	277	36	53	14.5097
UUUGCAAAAAAAAGUAA	chr1:36521511-36521783(+)$1	272	157	174	13.8219
AGGGAAAUACUGCUCCC	chr9:33111083-33111345(-)$1	262	144	161	12.7523
GUUAGGUUCAGAACUAA	chr2:65496340-65496586(+)$1	246	62	79	13.5356
CAGUUACAGACACAACU	chr14:24633259-24633531(+)$1	272	9	26	14.5097
CCGCCAGUUAAGAGGAA	chr3:156876467-156876723(-)$1	256	48	65	12.4676
uuucuuuguguuuagaa	chr19:57804773-57805030(+)$1	257	201	218	14.5097
UAAUUUGGUCUUUGGUC	chr17:26910559-26910868(-)$1	309	161	178	13.8391
UUCUUAAAAAUGAAAGA	chr3:23848841-23849094(+)$1	253	181	198	12.7523
GGCGGGGAGAAGACCGG	chr6:4777341-4777619(+)$1	278	126	143	13.8436
CUUGAAAGAAACCUCAA	chr9:79000637-79000865(-)$1	228	94	111	13.8560
UUGUAUAACAGGUUAUU	chr12:54678495-54678760(+)$1	265	17	34	13.9996
CUCUUCGCCGUCCAAGA	chr16:21513580-21513846(-)$1	266	114	131	14.5097
GCACGGUCGUUUAUGUG	chr22:22329778-22330033(-)$1	255	54	71	13.8560
CUGCAGUUUCUUGUGUA	chr8:103661486-103661756(-)$1	270	135	152	14.5097
GUGUCAAAGUGUAGGCA	chr22:50020478-50020714(-)$1	236	40	57	13.6956
CCGGGUUUCUUUCCCCU	chr18:3452438-3452679(+)$1	241	13	30	12.9371
UUAGGUUUAUAUGUCUA	chr7:63808134-63808389(+)$1	255	197	214	13.8613
UUUUUUCUCCCCCAGAA	chr1:242013822-242014082(+)$1	260	123	140	14.5097
CAUUUUCCCAACUAGAU	chr1:93827091-93827368(+)$1	277	96	113	14.5097
AGGAAUUUUCAUCUUCA	chr5:130814995-130815266(-)$1	271	87	104	14.0649
GUGGAGAAAAUUAUUCA	chr5:133492666-133492930(-)$1	264	235	252	12.9278
UAUAAUUUUAUAUUUGU	chr17:55761724-55761978(+)$1	254	197	214	13.9847
AUCUAUUUUUACUUGGG	chr17:56166515-56166767(+)$1	252	74	91	14.5097
UAUCUUAUCUUUCAGGU	chr12:98928087-98928350(+)$1	263	57	74	14.5097
ACGCUGUAUGGCAAGCG	chr8:90996538-90996815(-)$1	277	197	214	13.8630
CCACCAUUGAGGAGGUA	chr6:31785421-31785667(+)$1	246	15	32	13.3150
CAAAUCAUGAUCUGUUU	chr15:93445292-93445540(+)$1	248	161	178	13.8560
UACUAAUUAAUAAUAGU	chr11:65192495-65192730(+)$1	235	73	90	14.5097
gcagagcagaauaucug	chr16:21526814-21527064(-)$1	250	158	175	14.5097
CUGUGUUUUGAGCCACA	chr19:34718635-34718957(+)$1	322	37	54	14.5097
UAUGCCUUUAUUAGCAU	chr2:65496164-65496431(+)$1	267	45	62	13.8630
GAUGAUUCCUCUUUGAU	chr12:53565461-53565725(-)$1	264	149	166	13.5468
aagguuacgcucugccu	chr2:152279737-152279987(+)$1	250	70	87	14.5097
AGAAUGUAAACAGGUGU	chr2:71592763-71593013(+)$1	250	27	44	12.9460
AGAUGUCAUUUUCCAUC	chr7:150028498-150028734(+)$1	236	91	108	13.7837
UUAAGUAUGAACCCUUU	chr18:209922-210169(+)$1	247	79	96	13.7505

#DB
(((((........))))	chr3:51426573-51426826(+)$1	1	170	187	13.8219
(((((........))))	chr1:143450595-143450842(-)$1	1	140	157	14.5097
(((((........))))	chr8:30916691-30916964(+)$1	1	195	212	14.5097
((.((........)).)	chr15:52176721-52176938(+)$1	1	170	187	12.5173
(((((........))))	chr6:32945309-32945540(+)$1	1	151	168	12.9278
(((((........))).	chr19:39334312-39334552(-)$1	1	197	214	13.7177
(.(((........))))	chr2:198256844-198257107(-)$1	1	226	243	14.0589
(((((........))))	chr2:152276823-152277064(+)$1	1	16	33	14.5097
(((((........))))	chr6:42630231-42630543(+)$1	1	81	98	13.8219
(((((........))))	chr17:80107434-80107702(-)$1	1	121	138	13.9847
(((((........))))	chr1:236381355-236381612(-)$1	1	228	245	14.5097
(((((........))))	chr16:89954072-89954326(+)$1	1	68	85	14.5097
(((((........).))	chr19:17430949-17431192(+)$1	1	102	119	12.9911
.((((........))))	chr15:29992601-29992872(-)$1	1	124	141	13.0991
.((((........))))	chr1:111490118-111490367(-)$1	1	179	196	13.8613
(((((........))..	chr1:23697621-23697882(+)$1	1	219	236	12.3995
(((((........))))	chr6:7108933-7109177(+)$1	1	6	23	12.9278
(((((........))))	chr19:15442835-15443109(-)$1	1	217	234	13.8219
(((((........))))	chr12:57914060-57914271(-)$1	1	124	141	13.8630
(((.(........))))	chr6:151328850-151329157(+)$1	1	102	119	12.5911
(((((........))).	chr1:160247775-160248082(-)$1	1	222	239	13.1739
(((((........))))	chr19:10908150-10908377(+)$1	1	0	17	14.5097
(((((........))))	chr5:179156804-179157017(+)$1	1	131	148	13.8219
(((((........))))	chr9:96941559-96941825(+)$1	1	240	257	14.5097
.((((........))))	chr11:65199433-65199651(+)$1	1	182	199	12.7523
(((((........))))	chr7:75957975-75958213(-)$1	1	14	31	13.7837
(((((........))))	chr7:26230856-26231097(-)$1	1	172	189	13.7837
(((((........))))	chr5:172461425-172461724(+)$1	1	225	242	12.9278
((.((........)).)	chr3:187457760-187458047(-)$1	1	139	156	13.0881
(((((........))))	chr18:47918838-47919068(+)$1	1	16	33	13.8219
...((........))..	chr14:69618209-69618463(-)$1	1	74	91	12.4676
..(((........))).	chr7:39746119-39746360(+)$1	1	103	120	13.7505
(((((........))))	chr2:20493911-20494188(-)$1	1	36	53	14.5097
(((((........))))	chr1:36521511-36521783(+)$1	1	157	174	13.8219
.((((........))))	chr9:33111083-33111345(-)$1	1	144	161	12.7523
.((((........))))	chr2:65496340-65496586(+)$1	1	62	79	13.5356
(((((........))))	chr14:24633259-24633531(+)$1	1	9	26	14.5097
...((........))..	chr3:156876467-156876723(-)$1	1	48	65	12.4676
(((((........))))	chr19:57804773-57805030(+)$1	1	201	218	14.5097
(.(((........))).	chr17:26910559-26910868(-)$1	1	161	178	13.8391
.((((........))))	chr3:23848841-23849094(+)$1	1	181	198	12.7523
(.(((........))).	chr6:4777341-4777619(+)$1	1	126	143	13.8436
.((((........))))	chr9:79000637-79000865(-)$1	1	94	111	13.8560
..(((........))).	chr12:54678495-54678760(+)$1	1	17	34	13.9996
(((((........))))	chr16:21513580-21513846(-)$1	1	114	131	14.5097
.((((........))))	chr22:22329778-22330033(-)$1	1	54	71	13.8560
(((((........))))	chr8:103661486-103661756(-)$1	1	135	152	14.5097
(((((........))))	chr22:50020478-50020714(-)$1	1	40	57	13.6956
(.(((........))).	chr18:3452438-3452679(+)$1	1	13	30	12.9371
.((((........))))	chr7:63808134-63808389(+)$1	1	197	214	13.8613
(((((........))))	chr1:242013822-242014082(+)$1	1	123	140	14.5097
(((((........))))	chr1:93827091-93827368(+)$1	1	96	113	14.5097
(((((........))).	chr5:130814995-130815266(-)$1	1	87	104	14.0649
(((((........))))	chr5:133492666-133492930(-)$1	1	235	252	12.9278
(((((........))))	chr17:55761724-55761978(+)$1	1	197	214	13.9847
(((((........))))	chr17:56166515-56166767(+)$1	1	74	91	14.5097
(((((........))))	chr12:98928087-98928350(+)$1	1	57	74	14.5097
(((((........))))	chr8:90996538-90996815(-)$1	1	197	214	13.8630
(((((........))).	chr6:31785421-31785667(+)$1	1	15	32	13.3150
.((((........))))	chr15:93445292-93445540(+)$1	1	161	178	13.8560
(((((........))))	chr11:65192495-65192730(+)$1	1	73	90	14.5097
(((((........))))	chr16:21526814-21527064(-)$1	1	158	175	14.5097
(((((........))))	chr19:34718635-34718957(+)$1	1	37	54	14.5097
)((((........))))	chr2:65496164-65496431(+)$1	1	45	62	13.8630
(((.(........).))	chr12:53565461-53565725(-)$1	1	149	166	13.5468
(((((........))))	chr2:152279737-152279987(+)$1	1	70	87	14.5097
(((((........)).)	chr2:71592763-71593013(+)$1	1	27	44	12.9460
(((((........))))	chr7:150028498-150028734(+)$1	1	91	108	13.7837
..(((........))).	chr18:209922-210169(+)$1	1	79	96	13.7505

#PSSM
e : 0.37	g : 0.11	f : 0.10	! : 0.07	c : 0.05	i : 0.05	= : 0.04	: : 0.04	[ : 0.04	" : 0.02	% : 0.01	h : 0.01	b : 0.01	$ : 0.01	
e : 0.31	d : 0.20	g : 0.11	f : 0.08	[ : 0.05	i : 0.05	= : 0.04	! : 0.04	" : 0.02	c : 0.01	h : 0.01	b : 0.01	
e : 0.28	d : 0.20	c : 0.15	g : 0.10	f : 0.07	i : 0.05	= : 0.04	[ : 0.02	" : 0.02	h : 0.01	
e : 0.28	d : 0.20	c : 0.15	g : 0.08	b : 0.08	f : 0.07	i : 0.04	= : 0.02	[ : 0.02	
e : 0.28	d : 0.20	c : 0.15	g : 0.08	b : 0.08	f : 0.05	a : 0.04	i : 0.04	= : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.28	d : 0.20	c : 0.15	g : 0.08	b : 0.08	f : 0.05	a : 0.04	i : 0.04	= : 0.02	
e : 0.28	d : 0.20	c : 0.15	g : 0.08	b : 0.08	f : 0.05	i : 0.04	= : 0.02	] : 0.02	h : 0.01	
e : 0.28	d : 0.20	c : 0.15	g : 0.10	f : 0.07	] : 0.04	i : 0.04	= : 0.02	4 : 0.02	2 : 0.01	h : 0.01	
e : 0.31	d : 0.20	g : 0.10	f : 0.08	] : 0.08	= : 0.04	2 : 0.04	i : 0.04	4 : 0.02	h : 0.01	5 : 0.01	6 : 0.01	

#score	949.0926510765846
#seq	69
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_transcript_m3_run1.txt

#BEAR
[ccc[ddddooooooddddcccgg	chr17:73805663-73805942(+)$1	279	121	145	12.7078
eeedddd[aooooooa333dddd3	chr2:54880636-54880879(+)$1	243	8	32	11.6065
ggggeeeeennnnneeeee333gg	chr19:30433466-30433711(+)$1	245	167	191	10.7346
!!a[eeeeeooooooeeeee]a22	chr10:11653289-11653543(-)$1	254	163	187	15.9714
ceeeeecccooooooccc]eeeee	chr15:66795386-66795596(-)$1	210	13	37	12.9648
ccc[eeeeeooooooeeeee]ccc	chr12:10871626-10871922(-)$1	296	124	148	16.1033
=========oooooo=========	chr17:77752148-77752364(+)$1	216	107	131	12.3538
[eeeeecccooooooccc]eeeee	chr1:249150193-249150468(-)$1	275	55	79	13.0289
dd[a[ddddoooooodddda]ddd	chr20:61598000-61598221(+)$1	221	81	105	13.4259
bb!!eeeeeooooooeeeee22bb	chr3:197330281-197330501(-)$1	220	189	213	15.2350
((((eeeeeooooooeeeee333g	chr12:69742215-69742492(+)$1	277	41	65	13.4470
cc!!eeeeeooooooeeeee22cc	chr20:23615910-23616195(-)$1	285	79	103	16.1363
ggg[eeeeeooooooeeeeegggg	chr10:5007935-5008234(+)$1	299	240	264	15.3466
a[a[eeeeeooooooeeeee]a]a	chr2:171572013-171572231(+)$1	218	43	67	16.1247
dddd[eeeeennnnneeeee22dd	chr8:145657686-145658006(-)$1	320	41	65	10.8034
eee!!cccaooooooa]ccc]eee	chr9:139341250-139341584(-)$1	334	242	266	12.7833
dd####cccooooooccc4444dd	chr10:5040815-5041093(-)$1	278	220	244	12.3877
eeee[eeeeennnnneeeee]eee	chr14:24584845-24585094(+)$1	249	12	36	11.0888
ddddeeeeeooooooeeeee]ddd	chr19:5070900-5071230(+)$1	330	52	76	15.6006
dddd[ddddoooooodddd]dddd	chr20:17607856-17608088(-)$1	232	95	119	12.5320
[eeeee!!aooooooa22eeeee]	chr20:25263812-25264057(+)$1	245	90	114	12.7133
!!a[eeeeeooooooeeeee]a22	chr20:61591853-61592092(+)$1	239	64	88	15.9714
bb"""eeeeennnnneeeee333b	chr12:7047974-7048184(+)$1	210	59	83	10.7711
ccc[eeeeeooooooeeeee]ccc	chr15:25683526-25683736(-)$1	210	91	115	16.1033
c[a[eeeeeooooooeeeee]a]c	chr20:55092020-55092383(+)$1	363	294	318	16.1658
ddd[eeeeeooooooeeeee]ddd	chr10:3823686-3823944(-)$1	258	169	193	15.9809
""dddd[aooooooa]dddd]ddd	chr19:2216987-2217228(+)$1	241	123	147	11.4870
d"""eeeeeooooooeeeee22dd	chr19:2235868-2236117(-)$1	249	171	195	15.9636
!!bbeeeeeooooooeeeee]bb]	chr1:40027970-40028256(-)$1	286	161	185	14.8038
ddd[ccc[aooooooa]ccc]ddd	chr1:27238489-27238740(-)$1	251	221	245	12.4084
###cccddddoooooodddd]ccc	chr20:32257355-32257577(-)$1	222	144	168	11.5360
:ccceeeeeooooooeeeee]ccc	chr13:50571174-50571386(+)$1	212	0	24	14.9567
ddddeeeeeooooooeeeee:eee	chr20:54978359-54978653(+)$1	294	91	115	14.3433
gg!!eeeeeooooooeeeee333g	chr6:166737953-166738215(-)$1	262	148	172	16.3334
dddd[ddddooooooddddddddd	chr9:116137719-116137977(-)$1	258	163	187	12.5206
ee!!eeeeeooooooeeeeeeeee	chr3:48462668-48462931(-)$1	263	173	197	15.6624
eeeee[cccooooooccc]eeeee	chrX:38663804-38664071(+)$1	267	171	195	12.5000
Eccceeeeeooooooeeeee]ccc	chr17:5365485-5365748(-)$1	263	188	212	14.9518
:ccc[ddddoooooodddd]cccF	chr9:107562149-107562409(-)$1	260	64	88	11.4951
fff!!ddddoooooodddd22fff	chr19:39216207-39216451(+)$1	244	108	132	12.4928
eeeeeddddoooooodddd]eeee	chr12:56679628-56679888(-)$1	260	229	253	12.9264
bb!!eeeeeooooooeeeee22bb	chr20:60899521-60899769(-)$1	248	188	212	15.2350
bb!!eeeeeooooooeeeee]bb>	chr16:1370178-1370425(+)$1	247	152	176	15.1544
####eeeeeooooooeeeee22bb	chr1:28530165-28530452(-)$1	287	214	238	15.4769
[ccc!!cccooooooccc22ccc]	chr16:57241863-57242122(+)$1	259	105	129	11.5917
ceeeeecccooooooccc]eeeee	chr16:81726631-81726919(+)$1	288	129	153	12.9648
eeeeeeeeeooooooeeeee]eee	chr20:61427921-61428165(+)$1	244	150	174	15.7325

#otherMatches

#Seq PSSM
AGCAAGAGACUUCAUUCUCUGCUC	chr17:73805663-73805942(+)$1	279	121	145	12.7078
UGUGCUCCCUUUAGUGUAUGAGCA	chr2:54880636-54880879(+)$1	243	8	32	11.6065
GGCCGCCGCCCCGCGUGGCCUAGG	chr19:30433466-30433711(+)$1	245	167	191	10.7346
cuccccgggccgggACUCGGAGUU	chr10:11653289-11653543(-)$1	254	163	187	15.9714
GCUGUUUGCUACCAUGCAUAAUAG	chr15:66795386-66795596(-)$1	210	13	37	12.9648
UGAGCUAUAUCUCUCUGUAGGUCA	chr12:10871626-10871922(-)$1	296	124	148	16.1033
cccgcccccucgcccgggggUGGG	chr17:77752148-77752364(+)$1	216	107	131	12.3538
GACUAGAGGGAAGGGCUUGUUAGU	chr1:249150193-249150468(-)$1	275	55	79	13.0289
CAGGUGAGGGGCGGGCCUCUGUGC	chr20:61598000-61598221(+)$1	221	81	105	13.4259
aaauuaaaaugugacuuuuauguu	chr3:197330281-197330501(-)$1	220	189	213	15.2350
GUGUGAGUUGGCCAGAACUCUGAA	chr12:69742215-69742492(+)$1	277	41	65	13.4470
GUAGGCUUGAAGCCCCAGGCAAGC	chr20:23615910-23616195(-)$1	285	79	103	16.1363
CUCAUUUAUACAAUAAUGAGGAGC	chr10:5007935-5008234(+)$1	299	240	264	15.3466
UGCAGGCCUUUCUCCAGGUCAGGG	chr2:171572013-171572231(+)$1	218	43	67	16.1247
CCACCCUGCGAGCACUGCGGUAGU	chr8:145657686-145658006(-)$1	320	41	65	10.8034
GGCCUGGCCAAUCCAGAGCCUGCC	chr9:139341250-139341584(-)$1	334	242	266	12.7833
CUGCUGGAGAUGAUCCUCAACAAG	chr10:5040815-5041093(-)$1	278	220	244	12.3877
GGCUUGCCCCGAAGAGGGGCUGGC	chr14:24584845-24585094(+)$1	249	12	36	11.0888
CCACCAGGGACACCCCCUUGCGUG	chr19:5070900-5071230(+)$1	330	52	76	15.6006
GGUAAGCUGGGGAAGCAGCCUGCC	chr20:17607856-17608088(-)$1	232	95	119	12.5320
AGGUCAAACAGGUAGGCAUGGCCC	chr20:25263812-25264057(+)$1	245	90	114	12.7133
UUCACCUACAGCAUCGUGGGCGCC	chr20:61591853-61592092(+)$1	239	64	88	15.9714
CCCUUUCCCCGACAUGGGGGCCUG	chr12:7047974-7048184(+)$1	210	59	83	10.7711
gcgacgacagGUCAGUGUUGCCGC	chr15:25683526-25683736(-)$1	210	91	115	16.1033
CGAGUCCAGGUUUCACUGGAGUGG	chr20:55092020-55092383(+)$1	363	294	318	16.1658
CAGCCCUGGAGGGAGCCGGGCCUG	chr10:3823686-3823944(-)$1	258	169	193	15.9809
CCGGGCUCAGGGAGGUGCUCAGCA	chr19:2216987-2217228(+)$1	241	123	147	11.4870
CUACUUUCGGACAGACGAGGCCGA	chr19:2235868-2236117(-)$1	249	171	195	15.9636
UUCCCAGGCACCCCAGCCUGCGGU	chr1:40027970-40028256(-)$1	286	161	185	14.8038
GGUGCUGUGUGAAGUCCUGGAACC	chr1:27238489-27238740(-)$1	251	221	245	12.4084
GCAAGGGACUGUUGCUGGUCUCCU	chr20:32257355-32257577(-)$1	222	144	168	11.5360
CGCGAGUCCAUUUUGGGGCUGUGC	chr13:50571174-50571386(+)$1	212	0	24	14.9567
CAUUGAAUGCUAGAACGUUCUGAG	chr20:54978359-54978653(+)$1	294	91	115	14.3433
UGGCUGUGUUAUUCUGCAUAUUGC	chr6:166737953-166738215(-)$1	262	148	172	16.3334
UGGUAcaguggaagaacuggccag	chr9:116137719-116137977(-)$1	258	163	187	12.5206
GCCAGGGGAGUCAUAUUCCUGCCA	chr3:48462668-48462931(-)$1	263	173	197	15.6624
UUUCCGGGCGCCAAAGCCAGGAGA	chrX:38663804-38664071(+)$1	267	171	195	12.5000
Uggcugggcgcgguggcucacgcc	chr17:5365485-5365748(-)$1	263	188	212	14.9518
UGGUUGGUGGGUAUGCACCUGCCU	chr9:107562149-107562409(-)$1	260	64	88	11.4951
GGGGCAGGCCCACCAGCCUCACCC	chr19:39216207-39216451(+)$1	244	108	132	12.4928
AAUGUGCUUCAACAAAAGUAACAU	chr12:56679628-56679888(-)$1	260	229	253	12.9264
CAAAGGUCUCUUCCUGGGCCGAUG	chr20:60899521-60899769(-)$1	248	188	212	15.2350
CCUCCGGACACGUGGGUCUGUGGU	chr16:1370178-1370425(+)$1	247	152	176	15.1544
AGGGAUUCUAAUUCCAGAAUAAGG	chr1:28530165-28530452(-)$1	287	214	238	15.4769
GUGAUCAGGAACCUCCCUAUUCAA	chr16:57241863-57242122(+)$1	259	105	129	11.5917
AGAGCUCUCGCACAUGAGAAGUUC	chr16:81726631-81726919(+)$1	288	129	153	12.9648
cggggcggggcggggccUGCGCUC	chr20:61427921-61428165(+)$1	244	150	174	15.7325

#DB
.(((.((((......)))))))))	chr17:73805663-73805942(+)$1	1	121	145	12.7078
(((((((.(......)...)))).	chr2:54880636-54880879(+)$1	1	8	32	11.6065
(((((((((.....)))))...))	chr19:30433466-30433711(+)$1	1	167	191	10.7346
..(.(((((......))))).)..	chr10:11653289-11653543(-)$1	1	163	187	15.9714
(((((((((......))).)))))	chr15:66795386-66795596(-)$1	1	13	37	12.9648
(((.(((((......))))).)))	chr12:10871626-10871922(-)$1	1	124	148	16.1033
(((((((((......)))))))))	chr17:77752148-77752364(+)$1	1	107	131	12.3538
.((((((((......))).)))))	chr1:249150193-249150468(-)$1	1	55	79	13.0289
((.(.((((......))))).)))	chr20:61598000-61598221(+)$1	1	81	105	13.4259
((..(((((......)))))..))	chr3:197330281-197330501(-)$1	1	189	213	15.2350
....(((((......)))))...)	chr12:69742215-69742492(+)$1	1	41	65	13.4470
((..(((((......)))))..))	chr20:23615910-23616195(-)$1	1	79	103	16.1363
(((.(((((......)))))))))	chr10:5007935-5008234(+)$1	1	240	264	15.3466
(.(.(((((......))))).).)	chr2:171572013-171572231(+)$1	1	43	67	16.1247
((((.(((((.....)))))..))	chr8:145657686-145658006(-)$1	1	41	65	10.8034
(((..((((......).))).)))	chr9:139341250-139341584(-)$1	1	242	266	12.7833
((....(((......)))....))	chr10:5040815-5041093(-)$1	1	220	244	12.3877
((((.(((((.....))))).)))	chr14:24584845-24585094(+)$1	1	12	36	11.0888
(((((((((......))))).)))	chr19:5070900-5071230(+)$1	1	52	76	15.6006
((((.((((......)))).))))	chr20:17607856-17608088(-)$1	1	95	119	12.5320
.(((((..(......)..))))).	chr20:25263812-25264057(+)$1	1	90	114	12.7133
..(.(((((......))))).)..	chr20:61591853-61592092(+)$1	1	64	88	15.9714
((...(((((.....)))))...)	chr12:7047974-7048184(+)$1	1	59	83	10.7711
(((.(((((......))))).)))	chr15:25683526-25683736(-)$1	1	91	115	16.1033
(.(.(((((......))))).).)	chr20:55092020-55092383(+)$1	1	294	318	16.1658
(((.(((((......))))).)))	chr10:3823686-3823944(-)$1	1	169	193	15.9809
..((((.(......).)))).)))	chr19:2216987-2217228(+)$1	1	123	147	11.4870
(...(((((......)))))..))	chr19:2235868-2236117(-)$1	1	171	195	15.9636
..(((((((......))))).)).	chr1:40027970-40028256(-)$1	1	161	185	14.8038
(((.(((.(......).))).)))	chr1:27238489-27238740(-)$1	1	221	245	12.4084
...(((((((......)))).)))	chr20:32257355-32257577(-)$1	1	144	168	11.5360
.((((((((......))))).)))	chr13:50571174-50571386(+)$1	1	0	24	14.9567
))))(((((......))))).(((	chr20:54978359-54978653(+)$1	1	91	115	14.3433
((..(((((......)))))...)	chr6:166737953-166738215(-)$1	1	148	172	16.3334
((((.((((......)))))))))	chr9:116137719-116137977(-)$1	1	163	187	12.5206
((..(((((......)))))))))	chr3:48462668-48462931(-)$1	1	173	197	15.6624
(((((.(((......))).)))))	chrX:38663804-38664071(+)$1	1	171	195	12.5000
(((((((((......))))).)))	chr17:5365485-5365748(-)$1	1	188	212	14.9518
.(((.((((......)))).)))(	chr9:107562149-107562409(-)$1	1	64	88	11.4951
(((..((((......))))..)))	chr19:39216207-39216451(+)$1	1	108	132	12.4928
(((((((((......)))).))))	chr12:56679628-56679888(-)$1	1	229	253	12.9264
((..(((((......)))))..))	chr20:60899521-60899769(-)$1	1	188	212	15.2350
((..(((((......))))).)).	chr16:1370178-1370425(+)$1	1	152	176	15.1544
....(((((......)))))..))	chr1:28530165-28530452(-)$1	1	214	238	15.4769
.(((..(((......)))..))).	chr16:57241863-57242122(+)$1	1	105	129	11.5917
)((((((((......))).)))))	chr16:81726631-81726919(+)$1	1	129	153	12.9648
(((((((((......))))).)))	chr20:61427921-61428165(+)$1	1	150	174	15.7325

#PSSM
d : 0.21	e : 0.14	c : 0.12	[ : 0.08	b : 0.08	g : 0.06	! : 0.06	# : 0.04	: : 0.04	= : 0.02	( : 0.02	a : 0.02	" : 0.02	E : 0.02	f : 0.02	
e : 0.23	d : 0.19	c : 0.17	b : 0.08	g : 0.06	! : 0.06	[ : 0.04	" : 0.04	# : 0.04	= : 0.02	( : 0.02	f : 0.02	
e : 0.21	d : 0.17	c : 0.14	! : 0.12	a : 0.08	# : 0.06	g : 0.04	" : 0.04	= : 0.02	[ : 0.02	( : 0.02	b : 0.02	f : 0.02	
[ : 0.19	e : 0.17	! : 0.17	d : 0.14	c : 0.12	# : 0.04	" : 0.04	g : 0.02	= : 0.02	a : 0.02	( : 0.02	b : 0.02	
e : 0.63	[ : 0.14	! : 0.06	d : 0.04	c : 0.04	= : 0.02	# : 0.02	" : 0.02	
e : 0.65	d : 0.19	c : 0.06	= : 0.02	# : 0.02	[ : 0.02	! : 0.02	
e : 0.57	d : 0.19	c : 0.17	= : 0.02	! : 0.02	[ : 0.02	
e : 0.57	d : 0.17	c : 0.14	[ : 0.04	= : 0.02	! : 0.02	a : 0.02	
e : 0.57	d : 0.17	c : 0.12	a : 0.08	= : 0.02	o : 0.02	
o : 0.89	e : 0.06	n : 0.02	d : 0.02	
o : 0.91	n : 0.08	
o : 0.91	n : 0.08	
o : 0.91	n : 0.08	
o : 0.91	n : 0.08	
o : 0.89	n : 0.06	e : 0.02	a : 0.02	
e : 0.57	d : 0.14	c : 0.12	a : 0.08	= : 0.02	] : 0.02	o : 0.02	
e : 0.57	d : 0.19	c : 0.12	] : 0.04	3 : 0.02	= : 0.02	2 : 0.02	
e : 0.57	d : 0.19	c : 0.17	3 : 0.02	= : 0.02	2 : 0.02	
e : 0.59	d : 0.19	] : 0.08	c : 0.04	3 : 0.02	= : 0.02	4 : 0.02	2 : 0.02	
e : 0.65	d : 0.08	c : 0.06	] : 0.06	2 : 0.04	3 : 0.02	= : 0.02	a : 0.02	4 : 0.02	
] : 0.40	e : 0.14	2 : 0.14	3 : 0.08	c : 0.06	d : 0.06	= : 0.02	g : 0.02	4 : 0.02	: : 0.02	
e : 0.23	c : 0.17	d : 0.17	2 : 0.12	3 : 0.08	a : 0.08	b : 0.04	= : 0.02	g : 0.02	4 : 0.02	f : 0.02	
d : 0.23	e : 0.23	c : 0.17	b : 0.10	g : 0.06	3 : 0.06	2 : 0.04	] : 0.04	= : 0.02	f : 0.02	
e : 0.21	d : 0.21	c : 0.14	g : 0.10	b : 0.08	] : 0.06	2 : 0.04	3 : 0.02	= : 0.02	a : 0.02	F : 0.02	f : 0.02	> : 0.02	

#score	648.6268446774199
#seq	47
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_transcript_m2_run2.txt

#BEAR
[==========[a!!cccooooooccc]a==========]	chr2:85553713-85554024(-)$1	311	34	74	20.2612
======ggggggg!!ccc[bbmmmmbb]ccc22ggggggg	chr3:50312466-50312741(+)$1	275	38	78	12.8058
iiiiiiiiibb"""ddddoooooodddd333bb]iiiiii	chr3:156867969-156868252(-)$1	283	22	62	17.1026
[ggggggg%%%%%%ddddaooooooa]dddd333gggggg	chr1:1326643-1326940(-)$1	297	125	165	12.9149
ccc[bb[a[dddd!!ddddnnnnndddd333dddda]bb]	chr6:130031070-130031362(-)$1	292	8	48	11.6794
ccc####bb!!gggggggooooooggggggg22bb333cc	chr9:100777552-100777774(+)$1	222	65	105	14.6449
ciiiiiiiii$$$$$cccooooooccc4444iiiiiiiii	chr12:69644898-69645210(+)$1	312	225	265	18.6395
eeeee[a####dddd[bboooooobb22dddd333a]eee	chr20:62305209-62305500(+)$1	291	35	75	14.2781
gga!!ccc[bb$$$$$bboooooobb22bb]ccc4444a]	chr19:2206644-2206895(+)$1	251	15	55	14.6538
dd!!dddd[dddd[ddddoooooodddd]dddd22dddd2	chr1:113240901-113241168(+)$1	267	87	127	13.2463
[bb[ccc!!dddd!!cccammmma]ccc22dddd22ccc]	chr19:56170494-56170732(+)$1	238	124	164	12.1497
ddd[ccc####cccddddoooooodddd]ccc]ccc]ddd	chr20:62318958-62319210(+)$1	252	136	176	15.3125
:iiiiiiiii!!dddd!!ccclllccc]ddddiiiiiiii	chr5:14397069-14397359(+)$1	290	181	221	13.2977
===:ggggggg[bb!!bboooooobb22bb]gggggggee	chr14:91976395-91976728(-)$1	333	71	111	14.5576
ffffggggggg[a[ddddoooooodddda]ggggggg333	chr7:73021850-73022079(-)$1	229	102	142	16.0376
dd!!ccc[ccc[arrrrrrrrra]ccc]ccc333dddd33	chr16:16269671-16269943(-)$1	272	29	69	11.9313
ccc"""bb"""gggggggooooooggggggg333bb333c	chr14:24607460-24607697(+)$1	237	36	76	15.5733
======!!eeeee!!ccclllccc333eeeee22======	chr5:138614647-138614908(+)$1	261	151	191	12.7795
d[a####ggggggga[bboooooobb22a]gggggggadd	chr20:30327035-30327289(+)$1	254	127	167	15.4990
eeeeffffff####ddddooooooddddffffff22eeee	chr10:75551602-75551896(+)$1	294	129	169	13.0398
iii:::iiiiiiiiicccooooooccc22iiiiiiiiicc	chr2:102441682-102441923(+)$1	241	83	123	14.9680
:::iiiiiiiii"""cccrrrrrrrrrccc333iiiiiii	chr2:102448166-102448404(+)$1	238	195	235	12.7520
eeee:ggggggga!!bb[ccclllccc]bb22a]gggggg	chr2:32667348-32667591(+)$1	243	70	110	12.0540
GGGGG============ccclllccc22============	chr2:128186119-128186362(+)$1	243	172	212	12.5985
!!ccc[ccc!!==========lll==========ccc333	chr22:42264626-42264892(+)$1	266	130	170	14.9761
[cccbb!!ggggggg"""annnnna333ggggggg22bb4	chr3:48452201-48452422(-)$1	221	118	158	12.4735
!!dddddddd[cccddddoooooodddd22cccdddd]dd	chr7:139415933-139416327(-)$1	394	319	359	12.9843
::::ggggggg####cccooooooccc4444ggggggg:e	chr1:19503864-19504106(-)$1	242	142	182	13.5564
eee[ggggggg[ccc[bboooooobb]ccc22ggggggg3	chr5:177631465-177631815(+)$1	350	22	62	16.0263
iiiiiiiii[addddcccooooooccc]dddd]a]iiiii	chr20:42143213-42143529(+)$1	316	209	249	16.9211
####eeeee[bb"""cccrrrrrrrrrccc4444bb]eee	chr7:73010594-73010829(-)$1	235	69	109	12.0843
[ccc[ccc[ggggggg[cccmmmmccc]ggggggg]cccc	chr2:136511644-136511948(+)$1	304	242	282	12.8652
c[bb!!dddd"""ccccccnnnnnccc]ccc333dddd22	chr9:117026538-117026785(+)$1	247	171	211	13.0869
C:ggggggg[bb"""cccooooooccc333bb]ggggggg	chr2:27657246-27657522(+)$1	276	84	124	15.7587
iiiieeeeebb!!eeeee[aooooooa]eeeee333bb33	chr20:34312859-34313066(-)$1	207	133	173	12.4197
iiiiiiii[bb[ccc[ddddllldddd]cccbb]iiiiii	chr7:26233096-26233354(-)$1	258	30	70	13.2056
===========^^^^^^^^^^^^^^^^^^^^=========	chr22:36700980-36701209(-)$1	229	62	102	12.1210
ceeeee==========!!ccclllccc]==========GG	chr16:28884881-28885162(+)$1	281	110	150	13.5473
eee[ccc"""ccc!!aooooooa22ccc22ccc]eeeee]	chr16:2820304-2820566(+)$1	262	17	57	13.3292
e####dddd!!ccc[cccooooooccc]ccc]ddddeeee	chr16:2813920-2814167(+)$1	247	163	203	15.4198
"""ggggggg$$$$$ccc[bbmmmmbb]ccc333gggggg	chr11:63964885-63965165(+)$1	280	202	242	12.8213
======!!dddd[eeeeeooooooeeeeedddd333====	chr1:23637253-23637578(-)$1	325	82	122	14.8098
[iiiiiiiii####cccqqqqqqqqccc4444iiiiiiii	chr2:102486663-102486964(+)$1	301	188	228	13.9181
cc!!ccc"""bbbb[cccooooooccc22bb]bb333ccc	chr14:102549473-102549730(-)$1	257	206	246	15.6813
###gggggggffffffbboooooobb]ffffff333gggg	chr10:127515058-127515334(+)$1	276	62	102	14.3494
a!!===========[bbqqqqqqqqbb]===========2	chr16:89613004-89613270(+)$1	266	31	71	13.3262
ccc[bb[ggggggg[cccmmmmcccggggggg]bb]ccc]	chr2:96963922-96964155(-)$1	233	118	158	11.7216
ddd[ccc####ccc!!bboooooobbccc22cccdddd::	chr20:17640494-17640719(-)$1	225	176	216	13.1149
bddddgggggggcccddddmmmmdddd]ccc333gggggg	chr1:160232053-160232353(-)$1	300	200	240	12.2418
[bb[a[ddddeeeeecccooooooccc4444eeeee22dd	chr22:36684288-36684555(-)$1	267	76	116	13.7390
d"""bb[ccc!!a[ddddoooooodddd]acccbbdddd2	chr20:62575375-62575642(-)$1	267	122	162	14.7288
ccc[ccc!!dddd[ddddoooooodddd]ddddcccccc:	chr7:94285589-94285832(+)$1	243	195	235	13.9050
ddddiiiiiiiii####aooooooa4444iiiiiiiii]d	chr12:133383659-133383928(-)$1	269	66	106	17.2556
ddddccc[===========nnnnn===========]cccD	chr11:722570-722841(+)$1	271	157	197	12.9433

#otherMatches

#Seq PSSM
CUUUCUCCUCAUGCUUUCAAAACCGAAUCUGGGGAGGAAA	chr2:85553713-85554024(-)$1	311	34	74	20.2612
UCGGGGUGGGAUGGACUGAGCUUGUGCCUGGCGCGUCCCA	chr3:50312466-50312741(+)$1	275	38	78	12.8058
UGUAAGCUUCAGAAGAACUGGUUUGUUUACAUGCAAGCUU	chr3:156867969-156868252(-)$1	283	22	62	17.1026
ACUCCUUCAAGGAAGCUGCAGCUCGGUCAGCAGAGAAGGG	chr1:1326643-1326940(-)$1	297	125	165	12.9149
UUGCCAGGCGAGACAGGAACUUCUUUCCCCUUCUCUGUGU	chr6:130031070-130031362(-)$1	292	8	48	11.6794
CCUAAAGUCAAUUUUUGUUACUGUACagaggaggaagaag	chr9:100777552-100777774(+)$1	222	65	105	14.6449
UGAAGUUAAUAUAAGAAUUAAAUUAUUGGUAAUUGAUUUU	chr12:69644898-69645210(+)$1	312	225	265	18.6395
CCCGAUCCUGUCCUGUUCUGUGGUGAUUCGGGUGUGCUUG	chr20:62305209-62305500(+)$1	291	35	75	14.2781
ACCUUGAGUGGUGUCUGCUCUUCUGUUUCCUCUCUCCUGU	chr19:2206644-2206895(+)$1	251	15	55	14.6538
GGCUGCCACAGUGACUUCCUACCUGAAGCUGCUCCUGGCC	chr1:113240901-113241168(+)$1	267	87	127	13.2463
CUCUCGGAGCCGGGACCGCAAACGCCGGAGCCGGAGCCGC	chr19:56170494-56170732(+)$1	238	124	164	12.1497
GUGUCCUCCUUUGCUCUGGAGAUGCAGAUGUACGGGCCAC	chr20:62318958-62319210(+)$1	252	136	176	15.3125
AGCAUGCUGGAAGGUAAAGGACCCUCCAUACCCCAGUGUG	chr5:14397069-14397359(+)$1	290	181	221	13.2977
CGCGCGCCGCUUUUGAGGGGCGAACCAAGAUGGCGGCGGU	chr14:91976395-91976728(-)$1	333	71	111	14.5576
GUGUGGCUUCGUGACCCCCCUGCAGGGGCCUGAGGCUGAU	chr7:73021850-73022079(-)$1	229	102	142	16.0376
CCACAUAGUCAGUGGGUGUCAAAGUGGGUAUCUGGGCCGU	chr16:16269671-16269943(-)$1	272	29	69	11.9313
UGUUUUUGUUUUGGGAGACCUCCUUCUUCUACUCCAUACA	chr14:24607460-24607697(+)$1	237	36	76	15.5733
GUGACACCAAGAUAAGUAACGUAUGUAGUCUUCUUGUCAU	chr5:138614647-138614908(+)$1	261	151	191	12.7795
AAGAAAAGAGGGAGCAGCUAGGGCGCGGGUCUCCCUCCUC	chr20:30327035-30327289(+)$1	254	127	167	15.4990
GUGGAGGCCUGCUACUUCAACUGGGAAGAGGCCUACCCAC	chr10:75551602-75551896(+)$1	294	129	169	13.0398
UUGUCUGCCCUAUAGCUUGUUAUGGAGUUCUGUGGGGCUG	chr2:102441682-102441923(+)$1	241	83	123	14.9680
GAGGGAUGGGGGCUUUGCUUAUAAAUUGCACACCCCUUGU	chr2:102448166-102448404(+)$1	238	195	235	12.7520
UUCAAAAACACGAAAAUUUCUGUCAGACAUCGUACGUGUU	chr2:32667348-32667591(+)$1	243	70	110	12.0540
CUGUGUGCGGGCAUCCUCGGGGACCGGCAGGAUGCCUGCG	chr2:128186119-128186362(+)$1	243	172	212	12.5985
GGUGCAGACAGUUGCUGCGCCACAGGUGCAGCAGGUCCCG	chr22:42264626-42264892(+)$1	266	130	170	14.9761
CGGCCAGACCCUCGCACCCUUGAUGUUGGUGAGGGCGUGG	chr3:48452201-48452422(-)$1	221	118	158	12.4735
GUCUUCGAGAUGUUGGAGCAGAACCUCUAUGACUUUCUGA	chr7:139415933-139416327(-)$1	394	319	359	12.9843
AUUUGAGCAGGUACAGACCAACACGUUCUUUUUUGCUUCA	chr1:19503864-19504106(-)$1	242	142	182	13.5564
GCACCCGGCUCCGGCAUUAUAAAGGGCGCCACGAGUCGGC	chr5:177631465-177631815(+)$1	350	22	62	16.0263
GCCCCGCUCCCCAGGCCCUGAGCUGGGCCCUGUGCGGGUG	chr20:42143213-42143529(+)$1	316	209	249	16.9211
GACUCUGAGCGUCCGUGUCUCUCCCCCGCAACCCAUCCUC	chr7:73010594-73010829(-)$1	235	69	109	12.0843
UCAGGAAUUGGAuuuuuuuuuuugagauggagucucguuc	chr2:136511644-136511948(+)$1	304	242	282	12.8652
CCUUCCUCACUCCUCCGACACUGGGUCAGGAAUCGUGAAC	chr9:117026538-117026785(+)$1	247	171	211	13.0869
UCCCCAGGUCAUUUUUAUCACAGAAUACAUGUCAUCUGGG	chr2:27657246-27657522(+)$1	276	84	124	15.7587
AAGUAGGUAGAAAUUGCAAGAGAAAACAUGUAAACAUCAA	chr20:34312859-34313066(-)$1	207	133	173	12.4197
UUUAUAAUAGGUGGCAAUUUUGGAGGUAGCCCCGGUUAUG	chr7:26233096-26233354(-)$1	258	30	70	13.2056
UAUGAGAUCCUGACUCCAAACUCCAUUCCCAAGGGUUUCA	chr22:36700980-36701209(-)$1	229	62	102	12.1210
AUAGCCCCAGGCUCAGAGGCCCAGGGCGCUGGGUCUGGUG	chr16:28884881-28885162(+)$1	281	110	150	13.5473
UGGUGCUAUUGGGUCCUACUGUGUUCCCCAGGUCCCGCAG	chr16:2820304-2820566(+)$1	262	17	57	13.3292
CAAAUUUAGUCCCUUUCCAGUACAGGAUAGGCCUGAGUCU	chr16:2813920-2814167(+)$1	247	163	203	15.4198
UACCUUGAGUAGCGCGGAGGGUUUGCUGUCCAAGACUUAA	chr11:63964885-63965165(+)$1	280	202	242	12.8213
UGGUGGGGGGAGAGGUGGAUAUGGCUACCCUCCAGAUUAC	chr1:23637253-23637578(-)$1	325	82	122	14.8098
AGGAGGGCACUCUAAUCGUCCGCCAGGUACCCGUGUCUUC	chr2:102486663-102486964(+)$1	301	188	228	13.9181
GGAAUUUGAGGGGAAGACUUUAGUGUCAGUCACCAAAGAA	chr14:102549473-102549730(-)$1	257	206	246	15.6813
AGUUUUUCUGGUAACAACUAUUUUGUGUGUUAUUUACAGG	chr10:127515058-127515334(+)$1	276	62	102	14.3494
CGACUGUCUUUCCUCCCCUGGUUCUGGCAGGAGAGGCGGG	chr16:89613004-89613270(+)$1	266	31	71	13.3262
GGAGGAUCUGAUCCGAGUAAGGACUGGGUUGGUUUAUCUG	chr2:96963922-96964155(-)$1	233	118	158	11.7216
GGGACUCAGAAUCAAAGCAAAAAGGCUGAAGGAGCCCCAA	chr20:17640494-17640719(-)$1	225	176	216	13.1149
CCAAGACGGGAAGCGGGCUGCUGAGCCUCGCCGAUUCCCG	chr1:160232053-160232353(-)$1	300	200	240	12.2418
GUUGAUGUUCCUUCCCCCAGGUGCGGGAGAUGGAGGCAGA	chr22:36684288-36684555(-)$1	267	76	116	13.7390
UACAGGUGCUCAGGACCCAGCCGAGGGUGCAGCCCGCUCA	chr20:62575375-62575642(-)$1	267	122	162	14.7288
GGGCUGUCGUCCGGAGCCACUCCGGGCUGCGGAGCACCCA	chr7:94285589-94285832(+)$1	243	195	235	13.9050
GAGCUCUGCAGCAGAAACACAGGAGGAGAUGCUGCAGGUG	chr12:133383659-133383928(-)$1	269	66	106	17.2556
GGCUGGGAGCCUCCUGUGGAUGUGCUGCAGGAGGCCCCCU	chr11:722570-722841(+)$1	271	157	197	12.9433

#DB
.((((((((((.(..(((......))).))))))))))).	chr2:85553713-85554024(-)$1	1	34	74	20.2612
(((((((((((((..(((.((....)).)))..)))))))	chr3:50312466-50312741(+)$1	1	38	78	12.8058
(((((((((((...((((......))))...)).))))))	chr3:156867969-156868252(-)$1	1	22	62	17.1026
.(((((((......(((((......).))))...))))))	chr1:1326643-1326940(-)$1	1	125	165	12.9149
(((.((.(.((((..((((.....))))...))))).)).	chr6:130031070-130031362(-)$1	1	8	48	11.6794
(((....((..(((((((......)))))))..))...))	chr9:100777552-100777774(+)$1	1	65	105	14.6449
((((((((((.....(((......)))....)))))))))	chr12:69644898-69645210(+)$1	1	225	265	18.6395
(((((.(....((((.((......))..))))...).)))	chr20:62305209-62305500(+)$1	1	35	75	14.2781
(((..(((.((.....((......))..)).)))....).	chr19:2206644-2206895(+)$1	1	15	55	14.6538
((..((((.((((.((((......)))).))))..)))).	chr1:113240901-113241168(+)$1	1	87	127	13.2463
.((.(((..((((..((((....).)))..))))..))).	chr19:56170494-56170732(+)$1	1	124	164	12.1497
(((.(((....(((((((......)))).))).))).)))	chr20:62318958-62319210(+)$1	1	136	176	15.3125
.(((((((((..((((..(((...))).))))))))))))	chr5:14397069-14397359(+)$1	1	181	221	13.2977
))).(((((((.((..((......))..)).)))))))((	chr14:91976395-91976728(-)$1	1	71	111	14.5576
(((((((((((.(.((((......))))).)))))))...	chr7:73021850-73022079(-)$1	1	102	142	16.0376
((..(((.(((.(.........).))).)))...))))..	chr16:16269671-16269943(-)$1	1	29	69	11.9313
(((...((...(((((((......)))))))...))...)	chr14:24607460-24607697(+)$1	1	36	76	15.5733
((((((..(((((..(((...)))...)))))..))))))	chr5:138614647-138614908(+)$1	1	151	191	12.7795
(.(....((((((((.((......))..).))))))))))	chr20:30327035-30327289(+)$1	1	127	167	15.4990
((((((((((....((((......))))))))))..))))	chr10:75551602-75551896(+)$1	1	129	169	13.0398
)))...((((((((((((......)))..)))))))))((	chr2:102441682-102441923(+)$1	1	83	123	14.9680
...(((((((((...(((.........)))...)))))))	chr2:102448166-102448404(+)$1	1	195	235	12.7520
)))).((((((((..((.(((...))).))..).))))))	chr2:32667348-32667591(+)$1	1	70	110	12.0540
)))))(((((((((((((((...)))..))))))))))))	chr2:128186119-128186362(+)$1	1	172	212	12.5985
..(((.(((..((((((((((...)))))))))))))...	chr22:42264626-42264892(+)$1	1	130	170	14.9761
.(((((..(((((((...(.....)...)))))))..)).	chr3:48452201-48452422(-)$1	1	118	158	12.4735
..((((((((.(((((((......))))..))))))).))	chr7:139415933-139416327(-)$1	1	319	359	12.9843
....(((((((....(((......)))....))))))).(	chr1:19503864-19504106(-)$1	1	142	182	13.5564
(((.(((((((.(((.((......)).)))..))))))).	chr5:177631465-177631815(+)$1	1	22	62	16.0263
(((((((((.((((((((......))).)))).).)))))	chr20:42143213-42143529(+)$1	1	209	249	16.9211
....(((((.((...(((.........)))....)).)))	chr7:73010594-73010829(-)$1	1	69	109	12.0843
.(((.(((.(((((((.(((....))).))))))).))))	chr2:136511644-136511948(+)$1	1	242	282	12.8652
(.((..((((...((((((.....))).)))...))))..	chr9:117026538-117026785(+)$1	1	171	211	13.0869
(.(((((((.((...(((......)))...)).)))))))	chr2:27657246-27657522(+)$1	1	84	124	15.7587
(((((((((((..(((((.(......).)))))...))..	chr20:34312859-34313066(-)$1	1	133	173	12.4197
((((((((.((.(((.((((...)))).))))).))))))	chr7:26233096-26233354(-)$1	1	30	70	13.2056
(((((((((((....................)))))))))	chr22:36700980-36701209(-)$1	1	62	102	12.1210
))))))((((((((((..(((...))).))))))))))))	chr16:28884881-28885162(+)$1	1	110	150	13.5473
(((.(((...(((..(......)..)))..))).))))).	chr16:2820304-2820566(+)$1	1	17	57	13.3292
(....((((..(((.(((......))).))).))))))))	chr16:2813920-2814167(+)$1	1	163	203	15.4198
...(((((((.....(((.((....)).)))...))))))	chr11:63964885-63965165(+)$1	1	202	242	12.8213
((((((..((((.(((((......)))))))))...))))	chr1:23637253-23637578(-)$1	1	82	122	14.8098
.(((((((((....(((........)))....))))))))	chr2:102486663-102486964(+)$1	1	188	228	13.9181
((..(((...((((.(((......)))..)).))...)))	chr14:102549473-102549730(-)$1	1	206	246	15.6813
...(((((((((((((((......)).))))))...))))	chr10:127515058-127515334(+)$1	1	62	102	14.3494
(..(((((((((((.((........)).))))))))))).	chr16:89613004-89613270(+)$1	1	31	71	13.3262
(((.((.(((((((.(((....)))))))))).)).))).	chr2:96963922-96964155(-)$1	1	118	158	11.7216
(((.(((....(((..((......)))))..)))))))..	chr20:17640494-17640719(-)$1	1	176	216	13.1149
)((((((((((((((((((....)))).)))...))))))	chr1:160232053-160232353(-)$1	1	200	240	12.2418
.((.(.((((((((((((......)))....)))))..))	chr22:36684288-36684555(-)$1	1	76	116	13.7390
(...((.(((..(.((((......)))).)))))))))).	chr20:62575375-62575642(-)$1	1	122	162	14.7288
(((.(((..((((.((((......)))).)))))))))).	chr7:94285589-94285832(+)$1	1	195	235	13.9050
(((((((((((((....(......)....))))))))).)	chr12:133383659-133383928(-)$1	1	66	106	17.2556
))))(((.(((((((((((.....))))))))))).))))	chr11:722570-722841(+)$1	1	157	197	12.9433

#PSSM
c : 0.16	d : 0.14	[ : 0.12	e : 0.11	= : 0.09	i : 0.09	: : 0.05	! : 0.03	# : 0.03	g : 0.01	f : 0.01	G : 0.01	C : 0.01	" : 0.01	a : 0.01	b : 0.01	
i : 0.14	c : 0.14	d : 0.12	= : 0.11	e : 0.11	: : 0.05	! : 0.05	# : 0.05	g : 0.03	b : 0.03	[ : 0.03	" : 0.03	f : 0.01	G : 0.01	
i : 0.14	c : 0.14	= : 0.11	e : 0.11	d : 0.11	! : 0.07	b : 0.05	# : 0.05	g : 0.03	a : 0.03	: : 0.03	" : 0.03	f : 0.01	G : 0.01	
[ : 0.16	i : 0.14	= : 0.11	g : 0.07	# : 0.07	e : 0.07	! : 0.07	d : 0.07	: : 0.05	c : 0.05	" : 0.03	f : 0.01	G : 0.01	b : 0.01	
c : 0.16	i : 0.14	g : 0.14	= : 0.11	b : 0.07	e : 0.07	# : 0.05	d : 0.05	! : 0.03	: : 0.03	" : 0.01	f : 0.01	G : 0.01	[ : 0.01	a : 0.01	
g : 0.18	c : 0.18	i : 0.14	= : 0.12	b : 0.07	[ : 0.05	d : 0.05	e : 0.05	# : 0.03	" : 0.01	f : 0.01	: : 0.01	! : 0.01	
g : 0.20	c : 0.20	i : 0.16	= : 0.09	d : 0.09	[ : 0.05	! : 0.05	# : 0.03	e : 0.03	a : 0.01	b : 0.01	f : 0.01	
g : 0.24	i : 0.16	= : 0.09	d : 0.09	! : 0.09	c : 0.07	# : 0.05	b : 0.03	[ : 0.03	e : 0.03	" : 0.03	a : 0.01	f : 0.01	
g : 0.24	i : 0.14	= : 0.11	[ : 0.09	d : 0.09	# : 0.05	c : 0.05	" : 0.05	e : 0.05	! : 0.03	% : 0.01	b : 0.01	f : 0.01	
g : 0.24	d : 0.14	= : 0.11	i : 0.11	b : 0.07	! : 0.05	# : 0.05	" : 0.05	[ : 0.05	c : 0.03	% : 0.01	e : 0.01	f : 0.01	
g : 0.20	b : 0.12	= : 0.11	d : 0.09	! : 0.09	# : 0.09	i : 0.05	$ : 0.03	c : 0.03	" : 0.03	e : 0.03	% : 0.01	[ : 0.01	a : 0.01	f : 0.01	
g : 0.16	d : 0.12	[ : 0.11	c : 0.09	= : 0.09	$ : 0.05	! : 0.05	# : 0.05	i : 0.05	b : 0.05	" : 0.03	e : 0.03	% : 0.01	^ : 0.01	f : 0.01	
c : 0.14	g : 0.12	d : 0.12	a : 0.09	" : 0.09	= : 0.09	$ : 0.05	# : 0.05	b : 0.03	e : 0.03	i : 0.03	% : 0.01	! : 0.01	^ : 0.01	[ : 0.01	f : 0.01	
c : 0.14	! : 0.12	g : 0.11	= : 0.09	" : 0.07	[ : 0.07	# : 0.07	$ : 0.05	d : 0.05	e : 0.05	b : 0.03	% : 0.01	r : 0.01	i : 0.01	^ : 0.01	f : 0.01	
d : 0.22	! : 0.16	c : 0.09	g : 0.07	= : 0.07	[ : 0.07	$ : 0.05	" : 0.05	e : 0.05	# : 0.03	r : 0.01	a : 0.01	i : 0.01	^ : 0.01	f : 0.01	
c : 0.33	d : 0.22	[ : 0.07	= : 0.07	g : 0.05	! : 0.03	b : 0.03	e : 0.03	$ : 0.01	r : 0.01	" : 0.01	^ : 0.01	a : 0.01	f : 0.01	# : 0.01	
c : 0.33	d : 0.22	b : 0.16	= : 0.05	g : 0.03	! : 0.03	e : 0.03	r : 0.01	" : 0.01	[ : 0.01	^ : 0.01	o : 0.01	# : 0.01	
c : 0.35	d : 0.22	b : 0.12	g : 0.03	! : 0.03	= : 0.03	e : 0.03	q : 0.03	r : 0.01	[ : 0.01	" : 0.01	^ : 0.01	o : 0.01	a : 0.01	
o : 0.53	c : 0.11	[ : 0.05	a : 0.05	d : 0.05	r : 0.05	= : 0.03	q : 0.03	l : 0.01	^ : 0.01	m : 0.01	
o : 0.55	c : 0.09	n : 0.07	m : 0.05	r : 0.05	b : 0.03	q : 0.03	l : 0.01	= : 0.01	a : 0.01	d : 0.01	^ : 0.01	
o : 0.57	n : 0.07	m : 0.07	c : 0.05	r : 0.05	l : 0.05	b : 0.03	q : 0.03	= : 0.01	^ : 0.01	
o : 0.57	m : 0.11	l : 0.11	n : 0.07	r : 0.05	q : 0.03	c : 0.01	^ : 0.01	
o : 0.55	l : 0.11	m : 0.09	n : 0.07	a : 0.03	c : 0.03	r : 0.03	q : 0.03	^ : 0.01	
o : 0.55	n : 0.07	l : 0.07	m : 0.05	c : 0.05	r : 0.03	d : 0.03	q : 0.03	a : 0.01	] : 0.01	^ : 0.01	2 : 0.01	
c : 0.31	d : 0.20	b : 0.12	m : 0.03	o : 0.03	g : 0.03	r : 0.03	= : 0.03	a : 0.03	q : 0.03	] : 0.01	3 : 0.01	^ : 0.01	2 : 0.01	e : 0.01	
c : 0.35	d : 0.20	b : 0.18	g : 0.05	3 : 0.03	r : 0.03	= : 0.03	a : 0.01	o : 0.01	^ : 0.01	e : 0.01	4 : 0.01	
c : 0.35	d : 0.20	2 : 0.09	b : 0.05	] : 0.05	g : 0.05	3 : 0.03	r : 0.03	= : 0.03	a : 0.01	^ : 0.01	e : 0.01	4 : 0.01	
] : 0.27	d : 0.18	2 : 0.12	c : 0.12	4 : 0.07	g : 0.05	e : 0.03	= : 0.03	3 : 0.03	^ : 0.01	f : 0.01	
c : 0.20	g : 0.09	4 : 0.09	2 : 0.09	= : 0.09	d : 0.07	] : 0.07	a : 0.05	3 : 0.05	b : 0.05	e : 0.05	f : 0.03	^ : 0.01	
c : 0.20	d : 0.12	= : 0.11	g : 0.09	4 : 0.07	b : 0.07	2 : 0.07	3 : 0.05	] : 0.03	e : 0.03	f : 0.03	i : 0.03	^ : 0.01	a : 0.01	
c : 0.20	d : 0.14	g : 0.12	= : 0.11	4 : 0.09	3 : 0.05	2 : 0.05	] : 0.03	e : 0.03	f : 0.03	i : 0.03	b : 0.03	^ : 0.01	
d : 0.14	= : 0.12	3 : 0.12	g : 0.12	c : 0.11	2 : 0.07	b : 0.05	i : 0.05	e : 0.05	f : 0.03	4 : 0.03	] : 0.03	
3 : 0.14	= : 0.12	g : 0.12	d : 0.11	i : 0.09	c : 0.09	] : 0.07	2 : 0.05	b : 0.05	f : 0.03	e : 0.03	a : 0.01	4 : 0.01	
3 : 0.18	g : 0.16	= : 0.12	i : 0.11	] : 0.07	d : 0.07	b : 0.07	c : 0.07	2 : 0.03	f : 0.01	a : 0.01	4 : 0.01	e : 0.01	
g : 0.24	i : 0.14	= : 0.12	d : 0.11	b : 0.09	3 : 0.09	2 : 0.05	c : 0.05	e : 0.03	4 : 0.01	] : 0.01	
g : 0.20	i : 0.16	d : 0.12	= : 0.11	3 : 0.09	2 : 0.05	c : 0.05	] : 0.05	a : 0.03	b : 0.03	e : 0.03	4 : 0.01	
g : 0.22	i : 0.16	= : 0.12	d : 0.11	c : 0.11	] : 0.07	3 : 0.05	e : 0.05	2 : 0.03	4 : 0.01	b : 0.01	
g : 0.18	i : 0.16	= : 0.12	d : 0.11	c : 0.11	e : 0.09	3 : 0.07	b : 0.05	4 : 0.01	a : 0.01	] : 0.01	2 : 0.01	
g : 0.14	c : 0.14	i : 0.12	= : 0.11	e : 0.11	d : 0.11	3 : 0.09	b : 0.03	: : 0.03	a : 0.01	2 : 0.01	G : 0.01	] : 0.01	
g : 0.12	i : 0.12	] : 0.11	e : 0.11	c : 0.09	d : 0.09	3 : 0.09	2 : 0.07	= : 0.07	: : 0.03	4 : 0.01	G : 0.01	D : 0.01	

#score	758.1108003298871
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_UTR_m1_run2.txt

#BEAR
c[dddd[ccctttttttttttccc]dd	chr3:45722657-45722926(+)$1	269	102	129	22.3907
hhhhhhhhvvvvvvvvvvvvvhhhhhh	chr19:38123167-38123484(-)$1	317	1	28	23.1074
iiiiiiiivvvvvvvvvvvvviiiiii	chr18:46446145-46446398(-)$1	253	194	221	25.7216
hhhhh[cccuuuuuuuuuuuuccc]hh	chr16:75142513-75142750(+)$1	237	96	123	23.7753
:ggggggguuuuuuuuuuuuggggggg	chr10:75008431-75008715(-)$1	284	156	183	23.4815
cgggggggvvvvvvvvvvvvvgggggg	chr20:42825350-42825638(-)$1	288	118	145	25.6176
eeffffffvvvvvvvvvvvvvffffff	chr4:74321413-74321645(+)$1	232	56	83	23.2826
gggggdddduuuuuuuuuuuuddddFF	chr2:3483239-3483534(+)$1	295	66	93	23.4387
ddffffffvvvvvvvvvvvvvffffff	chr2:223806458-223806704(+)$1	246	151	178	23.2685
"""eeeeeyyyyyyyyyyyyyyyyeee	chr4:433637-433878(-)$1	241	142	169	21.7724
:gggggggvvvvvvvvvvvvvgggggg	chr17:73163593-73163917(-)$1	324	132	159	24.7427
ddd!!dddduuuuuuuuuuuudddd22	chr12:110970834-110971147(-)$1	313	169	196	23.6652
c"""eeeeeuuuuuuuuuuuueeeee2	chr16:11852745-11853043(-)$1	298	198	225	24.0035
gggggggwwwwwwwwwwwwwwgggggg	chr2:178087969-178088198(+)$1	229	115	142	24.5436
ccc[eeeeeuuuuuuuuuuuueeeee]	chr11:93463198-93463471(-)$1	273	168	195	24.2401
iiiiiiiivvvvvvvvvvvvviiiiii	chr13:32998878-32999160(-)$1	282	166	193	25.7216
dddeeeeevvvvvvvvvvvvveeeee2	chr6:64293190-64293460(+)$1	270	33	60	24.1127
ggggggyyyyyyyyyyyyyyyyggggg	chr17:56080722-56080958(-)$1	236	106	133	23.0761
eeeeeyyyyyyyyyyyyyyyyeeeee:	chr6:83875028-83875293(-)$1	265	196	223	20.2920
:::ddddwwwwwwwwwwwwwwddddgg	chr20:22561599-22561925(-)$1	326	139	166	20.5238
[bb!!dddduuuuuuuuuuuudddd22	chr22:45133437-45133722(+)$1	285	40	67	23.5296
dddeeeeevvvvvvvvvvvvveeeee2	chr4:760910-761161(-)$1	251	207	234	24.1127
eedddd!!attttttttttta22dddd	chr4:83345577-83345884(-)$1	307	240	267	22.2035
c"""ddddvvvvvvvvvvvvvdddd33	chr8:74202654-74202961(-)$1	307	164	191	24.6940
FFFffffffuuuuuuuuuuuuffffff	chr2:37431783-37432075(+)$1	292	59	86	21.5892
!!bb[dddduuuuuuuuuuuudddd]b	chr14:104152464-104152777(+)$1	313	15	42	23.4692
ggggddddwwwwwwwwwwwwwwdddd]	chr6:8079685-8079961(-)$1	276	49	76	23.7985
:eeeee[avvvvvvvvvvvvva]eeee	chr18:33605343-33605664(-)$1	321	28	55	23.5466
e!!eeeeewwwwwwwwwwwwwweeeee	chr9:93976025-93976334(-)$1	309	228	255	23.5756
iiiiiiiiitttttttttttiiiiiii	chr9:20694364-20694658(+)$1	294	251	278	23.3836
ccceeeeettttttttttteeeee]cc	chr1:90401472-90401745(+)$1	273	136	163	21.3655
!ccc!!cccuuuuuuuuuuuuccc22c	chr2:139330707-139330992(+)$1	285	68	95	24.1721
dddd[dddduuuuuuuuuuuudddd]d	chr17:30708280-30708500(+)$1	220	45	72	23.4905
ccc[cccyyyyyyyyyyyyyyyyccc]	chr2:20649001-20649266(+)$1	265	189	216	22.5354
!!ffffffuuuuuuuuuuuuffffff]	chr2:101622813-101623057(+)$1	244	55	82	22.7584
iiiiiiiivvvvvvvvvvvvviiiiii	chr2:27665137-27665391(+)$1	254	93	120	25.7216
hhhhhhhhwwwwwwwwwwwwwwhhhhh	chr14:89696876-89697186(-)$1	310	27	54	22.3473
hhh[ddddyyyyyyyyyyyyyyyyddd	chr13:111372431-111372688(+)$1	257	52	79	21.3324
gggggggwwwwwwwwwwwwwwgggggg	chr8:95403850-95404112(-)$1	262	216	243	24.5436
ddd!!cccyyyyyyyyyyyyyyyyccc	chr2:228221799-228222085(+)$1	286	249	276	21.8687
gggggggwwwwwwwwwwwwwwgggggg	chr2:232319275-232319562(-)$1	287	33	60	24.5436
[ggggggguuuuuuuuuuuuggggggg	chr20:35155993-35156295(-)$1	302	175	202	24.3909
:gggggggvvvvvvvvvvvvvgggggg	chr17:53400255-53400522(+)$1	267	137	164	24.7427
ffffffyyyyyyyyyyyyyyyyfffff	chr4:155506231-155506525(-)$1	294	7	34	21.0221
ddd[ddddwwwwwwwwwwwwwwdddd]	chr10:133770039-133770279(+)$1	240	166	193	23.3193
iiiiiiiiwwwwwwwwwwwwwwiiiii	chr14:39819757-39820011(+)$1	254	73	100	24.7307
cc[ddddccctttttttttttccc]dd	chr3:49022877-49023148(+)$1	271	79	106	22.4233
:ggggggguuuuuuuuuuuuggggggg	chr7:155570429-155570707(+)$1	278	88	115	23.4815
ccgggggggtttttttttttggggggg	chr12:123998019-123998295(-)$1	276	160	187	23.2231
==========ttttttttttt======	chr21:27096594-27096956(-)$1	362	19	46	23.5016
gggggggxxxxxxxxxxxxxxxggggg	chr17:79861952-79862192(-)$1	240	209	236	20.3264
iiiiiiiiiuuuuuuuuuuuuiiiiii	chr1:39471457-39471738(+)$1	281	75	102	25.1293
ee"""cccvvvvvvvvvvvvvccc>>>	chr6:117881246-117881549(-)$1	303	27	54	23.8344
:::eeeeevvvvvvvvvvvvveeeee:	chr19:6677686-6677940(-)$1	254	30	57	20.6620
g!!ccc[avvvvvvvvvvvvva]cccg	chr20:34292062-34292290(-)$1	228	147	174	25.0979
iiii[cccwwwwwwwwwwwwwwcccii	chr19:18888666-18888945(+)$1	279	172	199	24.4836
$$$$$dddduuuuuuuuuuuudddd55	chr5:112214109-112214436(-)$1	327	122	149	21.1150
=====!!bbuuuuuuuuuuuubb====	chr2:46989712-46989996(+)$1	284	154	181	24.1315
dddd[dddduuuuuuuuuuuudddd]d	chr17:30708300-30708536(+)$1	236	25	52	23.4905
==========ttttttttttt======	chr6:44081254-44081528(-)$1	274	221	248	23.5016
####cccwwwwwwwwwwwwwwccc333	chr10:124816191-124816471(+)$1	280	79	106	23.7534

#otherMatches

#Seq PSSM
UCCUGGGUCUUUUCUGUGUGUGGAGUC	chr3:45722657-45722926(+)$1	269	102	129	22.3907
uuuuuuguuuuuaaaauuguuauagga	chr19:38123167-38123484(-)$1	317	1	28	23.1074
CUCCUUUUUCUUCUGCUGCUUGGAGGG	chr18:46446145-46446398(-)$1	253	194	221	25.7216
GCACUGCGUGAUUUUAUUUUAAUGAAG	chr16:75142513-75142750(+)$1	237	96	123	23.7753
AUGUAUUUGAAUACCUUAAAAAAUACA	chr10:75008431-75008715(-)$1	284	156	183	23.4815
CUCUUGAGUUCUUACAUACACUUCAAG	chr20:42825350-42825638(-)$1	288	118	145	25.6176
CAGAAAUAAAAUAUCUCCAAAUGUUUC	chr4:74321413-74321645(+)$1	232	56	83	23.2826
CAUGGAGGAACUCAAUAAAACUCCUGC	chr2:3483239-3483534(+)$1	295	66	93	23.4387
CAGUAUGAGAAUUUUUCUGAAUCAUAU	chr2:223806458-223806704(+)$1	246	151	178	23.2685
UUUCACCUAUCCAACCUUACUCAAGGG	chr4:433637-433878(-)$1	241	142	169	21.7724
GAGGCUUAGAAAAAACAUAAAUAGGCC	chr17:73163593-73163917(-)$1	324	132	159	24.7427
CUAUCAGGUCCUCAUUUCCAAGCCUCC	chr12:110970834-110971147(-)$1	313	169	196	23.6652
UAAGUUAAAUUUCUGAAAUGUUUUGGG	chr16:11852745-11853043(-)$1	298	198	225	24.0035
UUUCUGAAAACUACAGUAUUCUCAGAA	chr2:178087969-178088198(+)$1	229	115	142	24.5436
CUUUUGCCCUUGCUCUGUUUUGGGCAU	chr11:93463198-93463471(-)$1	273	168	195	24.2401
AGUGGAUGGAAUGUGGAAAAACAUCUA	chr13:32998878-32999160(-)$1	282	166	193	25.7216
UUUGUGUGUAUAUAUGUGCCUCACACC	chr6:64293190-64293460(+)$1	270	33	60	24.1127
GCAUGGUUGUCCUUUUUCCUCUUCAUG	chr17:56080722-56080958(-)$1	236	106	133	23.0761
GAUCACCUACUUCAUCAUCUCUGGUCA	chr6:83875028-83875293(-)$1	265	196	223	20.2920
UUACUUGGCUUACAAAAUAUACAGGCU	chr20:22561599-22561925(-)$1	326	139	166	20.5238
UGACCAGACUCCAGCACACCUGUCUCC	chr22:45133437-45133722(+)$1	285	40	67	23.5296
UCAGCUGCUCACCCUGUCCCUGCAGCU	chr4:760910-761161(-)$1	251	207	234	24.1127
GUCACCCUCUUCUCCAAUUUGUAGGUG	chr4:83345577-83345884(-)$1	307	240	267	22.2035
UGUGUGAUAAAAUUAAGCCAAAUCAAC	chr8:74202654-74202961(-)$1	307	164	191	24.6940
UAAAUUAAUAAAUCUgaaucaauuaau	chr2:37431783-37432075(+)$1	292	59	86	21.5892
CUGCUUUUCUCUACUAAUCUUGAAGUG	chr14:104152464-104152777(+)$1	313	15	42	23.4692
CAAGUUGAGAUCCAGUUAUAAAUUAAC	chr6:8079685-8079961(-)$1	276	49	76	23.7985
GGACAUGGGCGUAUCUUCUAACGAUGU	chr18:33605343-33605664(-)$1	321	28	55	23.5466
AACAUGGGAAUUUUUCUCUUACCCCAU	chr9:93976025-93976334(-)$1	309	228	255	23.5756
uuuuuaaaauuuucuuuuauuuuuaaa	chr9:20694364-20694658(+)$1	294	251	278	23.3836
UUGCUUUAACUCCGUUCACUAAAGACA	chr1:90401472-90401745(+)$1	273	136	163	21.3655
AUAAAGUUGUUACUACUUAUUCAAGAU	chr2:139330707-139330992(+)$1	285	68	95	24.1721
UUAGUCCAUGUGUAUUAUUAAAUGGUC	chr17:30708280-30708500(+)$1	220	45	72	23.4905
GAUGACAUUUAUAAAAUGGCUCUUGUG	chr2:20649001-20649266(+)$1	265	189	216	22.5354
UUAUAAAAUUGCCUUCAUGUUUUUGUU	chr2:101622813-101623057(+)$1	244	55	82	22.7584
cggggccgggCCCAGGUACAGCGGCCC	chr2:27665137-27665391(+)$1	254	93	120	25.7216
GGGUUACAGAAUUUAAAGCAGAUGUGA	chr14:89696876-89697186(-)$1	310	27	54	22.3473
CAGCAUUUUAGAAACUACAAAUAUAGG	chr13:111372431-111372688(+)$1	257	52	79	21.3324
UGUAUAGGAGCUCUUAAAAAACUGUGC	chr8:95403850-95404112(-)$1	262	216	243	24.5436
ACACCUGCUUAAAAUUCUCCCUUUGCA	chr2:228221799-228222085(+)$1	286	249	276	21.8687
AGCAGAAUGUUUUAUCAUGGUUUUUGC	chr2:232319275-232319562(-)$1	287	33	60	24.5436
GAGUCCUGCCUGACACUGCCCAGGGCU	chr20:35155993-35156295(-)$1	302	175	202	24.3909
UCUGGUGGUCUCCUCGUCAAUCCAUCA	chr17:53400255-53400522(+)$1	267	137	164	24.7427
gcagggccuuugucugucucaucucug	chr4:155506231-155506525(-)$1	294	7	34	21.0221
UGUUUCUGUAGAAGUAGCCCAUCAGAU	chr10:133770039-133770279(+)$1	240	166	193	23.3193
AAUAAAUUAUAGUUGAUUUAAAGAUUU	chr14:39819757-39820011(+)$1	254	73	100	24.7307
AGUUUCUGAUUAUAAAAAUGUGUCUAG	chr3:49022877-49023148(+)$1	271	79	106	22.4233
CAAUACAUUUAUCCUGAUCUGUGUAUU	chr7:155570429-155570707(+)$1	278	88	115	23.4815
ACAGGCCUCUCGAGAGCACCGAGGCCU	chr12:123998019-123998295(-)$1	276	160	187	23.2231
AAUUAAUCUGGUAAUUUGUCACGGAUU	chr21:27096594-27096956(-)$1	362	19	46	23.5016
CCCAGGCCUCCAGCCCUCCAAAGCCUG	chr17:79861952-79862192(-)$1	240	209	236	20.3264
AAACAAAUAAAAUACUUAAGCUAUUUG	chr1:39471457-39471738(+)$1	281	75	102	25.1293
UAUUAGCCUGUAAAUAAAGAUGGCAUC	chr6:117881246-117881549(-)$1	303	27	54	23.8344
UUUGGGUGCCCCAACUGACCACACCCC	chr19:6677686-6677940(-)$1	254	30	57	20.6620
AAUAGCUCUAGGAGAACAAAUGUGCUU	chr20:34292062-34292290(-)$1	228	147	174	25.0979
GCGGCGGACCCCCCCACGACCCUCCUC	chr19:18888666-18888945(+)$1	279	172	199	24.4836
AUAUAUAGGGAGCACUUUAAACUUAAU	chr5:112214109-112214436(-)$1	327	122	149	21.1150
AGUGUUAACGGUCUUUUUAAAGUGCAU	chr2:46989712-46989996(+)$1	284	154	181	24.1315
UUAGUCCAUGUGUAUUAUUAAAUGGUC	chr17:30708300-30708536(+)$1	236	25	52	23.4905
GGUCUGAGCCCUUGCUUUUCUGGUUUG	chr6:44081254-44081528(-)$1	274	221	248	23.5016
UAAUGUUUAUUUAAAAAACCUGACUUU	chr10:124816191-124816471(+)$1	280	79	106	23.7534

#DB
(.((((.(((...........))).))	chr3:45722657-45722926(+)$1	1	102	129	22.3907
((((((((.............))))))	chr19:38123167-38123484(-)$1	1	1	28	23.1074
((((((((.............))))))	chr18:46446145-46446398(-)$1	1	194	221	25.7216
(((((.(((............))).))	chr16:75142513-75142750(+)$1	1	96	123	23.7753
.(((((((............)))))))	chr10:75008431-75008715(-)$1	1	156	183	23.4815
((((((((.............))))))	chr20:42825350-42825638(-)$1	1	118	145	25.6176
))((((((.............))))))	chr4:74321413-74321645(+)$1	1	56	83	23.2826
)))))((((............))))((	chr2:3483239-3483534(+)$1	1	66	93	23.4387
))((((((.............))))))	chr2:223806458-223806704(+)$1	1	151	178	23.2685
...(((((................)))	chr4:433637-433878(-)$1	1	142	169	21.7724
.(((((((.............))))))	chr17:73163593-73163917(-)$1	1	132	159	24.7427
(((..((((............))))..	chr12:110970834-110971147(-)$1	1	169	196	23.6652
(...(((((............))))).	chr16:11852745-11853043(-)$1	1	198	225	24.0035
(((((((..............))))))	chr2:178087969-178088198(+)$1	1	115	142	24.5436
(((.(((((............))))).	chr11:93463198-93463471(-)$1	1	168	195	24.2401
((((((((.............))))))	chr13:32998878-32999160(-)$1	1	166	193	25.7216
((((((((.............))))).	chr6:64293190-64293460(+)$1	1	33	60	24.1127
((((((................)))))	chr17:56080722-56080958(-)$1	1	106	133	23.0761
(((((................))))).	chr6:83875028-83875293(-)$1	1	196	223	20.2920
...((((..............))))((	chr20:22561599-22561925(-)$1	1	139	166	20.5238
.((..((((............))))..	chr22:45133437-45133722(+)$1	1	40	67	23.5296
((((((((.............))))).	chr4:760910-761161(-)$1	1	207	234	24.1127
((((((..(...........)..))))	chr4:83345577-83345884(-)$1	1	240	267	22.2035
(...((((.............))))..	chr8:74202654-74202961(-)$1	1	164	191	24.6940
(((((((((............))))))	chr2:37431783-37432075(+)$1	1	59	86	21.5892
..((.((((............)))).)	chr14:104152464-104152777(+)$1	1	15	42	23.4692
((((((((..............)))).	chr6:8079685-8079961(-)$1	1	49	76	23.7985
.(((((.(.............).))))	chr18:33605343-33605664(-)$1	1	28	55	23.5466
(..(((((..............)))))	chr9:93976025-93976334(-)$1	1	228	255	23.5756
(((((((((...........)))))))	chr9:20694364-20694658(+)$1	1	251	278	23.3836
((((((((...........))))).))	chr1:90401472-90401745(+)$1	1	136	163	21.3655
.(((..(((............)))..)	chr2:139330707-139330992(+)$1	1	68	95	24.1721
((((.((((............)))).)	chr17:30708280-30708500(+)$1	1	45	72	23.4905
(((.(((................))).	chr2:20649001-20649266(+)$1	1	189	216	22.5354
..((((((............)))))).	chr2:101622813-101623057(+)$1	1	55	82	22.7584
((((((((.............))))))	chr2:27665137-27665391(+)$1	1	93	120	25.7216
((((((((..............)))))	chr14:89696876-89697186(-)$1	1	27	54	22.3473
(((.((((................)))	chr13:111372431-111372688(+)$1	1	52	79	21.3324
(((((((..............))))))	chr8:95403850-95404112(-)$1	1	216	243	24.5436
(((..(((................)))	chr2:228221799-228222085(+)$1	1	249	276	21.8687
(((((((..............))))))	chr2:232319275-232319562(-)$1	1	33	60	24.5436
.(((((((............)))))))	chr20:35155993-35156295(-)$1	1	175	202	24.3909
.(((((((.............))))))	chr17:53400255-53400522(+)$1	1	137	164	24.7427
((((((................)))))	chr4:155506231-155506525(-)$1	1	7	34	21.0221
(((.((((..............)))).	chr10:133770039-133770279(+)$1	1	166	193	23.3193
((((((((..............)))))	chr14:39819757-39820011(+)$1	1	73	100	24.7307
((.(((((((...........))).))	chr3:49022877-49023148(+)$1	1	79	106	22.4233
.(((((((............)))))))	chr7:155570429-155570707(+)$1	1	88	115	23.4815
))(((((((...........)))))))	chr12:123998019-123998295(-)$1	1	160	187	23.2231
((((((((((...........))))))	chr21:27096594-27096956(-)$1	1	19	46	23.5016
(((((((...............)))))	chr17:79861952-79862192(-)$1	1	209	236	20.3264
(((((((((............))))))	chr1:39471457-39471738(+)$1	1	75	102	25.1293
((...(((.............)))...	chr6:117881246-117881549(-)$1	1	27	54	23.8344
...(((((.............))))).	chr19:6677686-6677940(-)$1	1	30	57	20.6620
(..(((.(.............).))))	chr20:34292062-34292290(-)$1	1	147	174	25.0979
((((.(((..............)))))	chr19:18888666-18888945(+)$1	1	172	199	24.4836
.....((((............))))..	chr5:112214109-112214436(-)$1	1	122	149	21.1150
(((((..((............))))))	chr2:46989712-46989996(+)$1	1	154	181	24.1315
((((.((((............)))).)	chr17:30708300-30708536(+)$1	1	25	52	23.4905
((((((((((...........))))))	chr6:44081254-44081528(-)$1	1	221	248	23.5016
....(((..............)))...	chr10:124816191-124816471(+)$1	1	79	106	23.7534

#PSSM
c : 0.14	g : 0.13	d : 0.13	i : 0.11	: : 0.11	e : 0.08	h : 0.06	! : 0.04	= : 0.04	[ : 0.03	" : 0.01	F : 0.01	f : 0.01	$ : 0.01	# : 0.01	
g : 0.21	d : 0.13	i : 0.11	c : 0.09	e : 0.08	h : 0.06	! : 0.06	" : 0.04	= : 0.04	: : 0.03	[ : 0.01	b : 0.01	F : 0.01	f : 0.01	$ : 0.01	# : 0.01	
g : 0.22	d : 0.14	i : 0.11	h : 0.06	f : 0.06	" : 0.06	c : 0.06	= : 0.04	e : 0.03	: : 0.03	b : 0.03	! : 0.03	F : 0.01	[ : 0.01	$ : 0.01	# : 0.01	
g : 0.22	e : 0.13	i : 0.11	d : 0.09	f : 0.08	[ : 0.06	h : 0.04	! : 0.04	" : 0.04	= : 0.04	c : 0.03	b : 0.01	$ : 0.01	# : 0.01	
g : 0.21	e : 0.16	d : 0.13	i : 0.09	f : 0.08	! : 0.06	[ : 0.06	h : 0.04	c : 0.04	= : 0.04	" : 0.01	$ : 0.01	
d : 0.24	g : 0.19	e : 0.14	i : 0.09	c : 0.09	f : 0.08	h : 0.03	! : 0.03	= : 0.03	[ : 0.01	y : 0.01	
d : 0.21	g : 0.18	e : 0.13	c : 0.11	i : 0.09	f : 0.06	[ : 0.04	y : 0.04	h : 0.03	! : 0.03	= : 0.03	
d : 0.18	e : 0.13	c : 0.11	g : 0.11	i : 0.09	w : 0.08	f : 0.06	y : 0.06	h : 0.03	a : 0.03	= : 0.03	! : 0.01	x : 0.01	b : 0.01	
v : 0.26	w : 0.18	d : 0.11	y : 0.11	c : 0.06	u : 0.06	e : 0.03	i : 0.03	= : 0.03	a : 0.01	f : 0.01	t : 0.01	g : 0.01	x : 0.01	b : 0.01	
u : 0.29	v : 0.26	w : 0.18	y : 0.11	t : 0.06	c : 0.03	= : 0.03	x : 0.01	
u : 0.29	v : 0.26	w : 0.18	t : 0.13	y : 0.11	x : 0.01	
u : 0.29	v : 0.26	w : 0.18	t : 0.13	y : 0.11	x : 0.01	
u : 0.29	v : 0.26	w : 0.18	t : 0.13	y : 0.11	x : 0.01	
u : 0.29	v : 0.26	w : 0.18	t : 0.13	y : 0.11	x : 0.01	
u : 0.29	v : 0.26	w : 0.18	t : 0.13	y : 0.11	x : 0.01	
u : 0.29	v : 0.26	w : 0.18	t : 0.13	y : 0.11	x : 0.01	
u : 0.29	v : 0.26	w : 0.18	t : 0.13	y : 0.11	x : 0.01	
u : 0.29	v : 0.26	w : 0.18	t : 0.13	y : 0.11	x : 0.01	
u : 0.29	v : 0.26	w : 0.18	t : 0.13	y : 0.11	x : 0.01	
u : 0.29	v : 0.26	w : 0.18	t : 0.11	y : 0.11	e : 0.01	x : 0.01	
v : 0.26	u : 0.22	w : 0.18	y : 0.11	t : 0.06	g : 0.06	a : 0.01	i : 0.01	e : 0.01	f : 0.01	x : 0.01	
g : 0.16	d : 0.14	e : 0.11	c : 0.09	y : 0.09	w : 0.09	i : 0.08	f : 0.06	a : 0.03	= : 0.03	h : 0.01	2 : 0.01	x : 0.01	b : 0.01	
g : 0.19	d : 0.18	e : 0.13	c : 0.11	i : 0.09	f : 0.08	y : 0.06	h : 0.03	] : 0.03	= : 0.03	2 : 0.01	b : 0.01	
g : 0.19	d : 0.19	c : 0.14	e : 0.14	i : 0.09	f : 0.08	y : 0.04	= : 0.04	h : 0.03	
d : 0.21	g : 0.19	e : 0.14	i : 0.09	f : 0.08	] : 0.06	c : 0.06	= : 0.04	h : 0.03	2 : 0.01	> : 0.01	3 : 0.01	
g : 0.21	e : 0.14	i : 0.11	d : 0.09	f : 0.08	c : 0.06	h : 0.04	2 : 0.04	] : 0.04	= : 0.04	3 : 0.03	F : 0.01	> : 0.01	5 : 0.01	
g : 0.22	i : 0.11	d : 0.09	2 : 0.08	] : 0.08	f : 0.06	h : 0.04	e : 0.04	c : 0.04	= : 0.04	: : 0.03	3 : 0.03	F : 0.01	b : 0.01	> : 0.01	5 : 0.01	

#score	1425.722779735874
#seq	61
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_UTR_m3_run1.txt

#BEAR
========="""ddddoooooodddd22==========	chr22:19124790-19125054(-)$1	264	64	102	15.1946
===========a!!bbrrrrrrrrrbb22a]=======	chr1:1019503-1019788(-)$1	285	215	253	12.6178
gg!!eeeee$$$$$cccmmmmccc22eeeee22ggggg	chr20:33509475-33509745(+)$1	270	202	240	14.3836
i"""dddd!!a[cccooooooccc]a22dddd]iiiii	chr13:21750330-21750604(-)$1	274	25	63	13.5210
]gggggggiiiiiiiiimmmmiiiiiiiiicccfffff	chr10:79556214-79556451(-)$1	237	165	203	12.7494
[a[dddd[ccc"""cccmmmmccc4444cccdddd]a2	chr5:177565274-177565524(+)$1	250	32	70	16.0774
bb[dddd[bb####bboooooobb4444bb]ddddbbc	chr1:55518185-55518477(+)$1	292	61	99	12.0418
ggggggggggg"""cccmmmmccc]ggggggg333ggg	chr19:19115260-19115473(-)$1	213	38	76	16.2410
gggggg[ccc####cccmmmmccc55555cccgggggg	chr17:76210781-76211022(+)$1	241	130	168	14.3582
dd[eeeee[dddd[cccmmmmccc333dddd333eeee	chr11:47843197-47843497(-)$1	300	195	233	14.7883
eeeee[a[eeeee!!bbmmmmbb4444eeeee]aeeee	chr3:186504188-186504417(+)$1	229	34	72	13.4572
cc[ggggggg[bb[cccmmmmccc]bb]ggggggg22c	chr11:118962752-118962982(+)$1	230	130	168	14.1802
[eeeee####ccc!!bboooooobb22ccc]eeeeeee	chr16:89858278-89858535(-)$1	257	190	228	12.7272
peeeeeggggggg"""ccclllccc4444ggggggg:f	chr7:44838711-44839000(+)$1	289	127	165	11.4203
hhhhhhhh!!ccc[cccooooooccc]ccc]hhhhhhh	chr15:91446106-91446358(+)$1	252	53	91	12.3121
:eeeee!!ccc!!ddddmmmmdddd333ccc22eeeee	chr16:29815914-29816186(+)$1	272	37	75	13.9617
========[ccc[eeeeellleeeee22ccc333====	chr2:39536503-39536760(-)$1	257	92	130	13.3636
iiiiiiiii[bb!!cccmmmmccc4444bb]iiiiiii	chr22:42296188-42296468(+)$1	280	58	96	17.8346
iiiiii####ccc[cccmmmmcccccc22iiiiiiiii	chr19:17166527-17166788(-)$1	261	71	109	16.5415
ddddd[eeeee"""cccmmmmccc666666eeeee]dd	chr17:77082762-77082985(+)$1	223	166	204	12.5580
=========[dddd[bbmmmmbbdddd]==========	chr1:40210945-40211322(+)$1	377	19	57	14.7282
fffdddd"""ccc[bbmmmmbbccc4444dddd333ff	chr1:110038252-110038558(+)$1	306	189	227	12.3520
gggggeeeee"""ddddmmmmdddd]eeeee]gggggg	chr5:140048605-140048877(+)$1	272	119	157	13.6405
iiiiiiiii[gggggggooooooggggggg22iiiiii	chr17:35468445-35468689(-)$1	244	96	134	13.2567
eeeee!!eeeee"""bbmmmmbb333eeeee22eeeee	chr16:89804151-89804426(+)$1	275	210	248	13.1880
eee=============rrrrrrrrr=============	chr5:130495145-130495418(-)$1	273	43	81	12.4483
!ffffff[a[ddddcccmmmmccc333dddda]fffff	chr19:41119663-41119940(+)$1	277	117	155	13.7009
ibbgggggggbb[a[ccclllccc]a]bb]ggggggg]	chr20:42142910-42143176(+)$1	266	123	161	12.8331
c[iiiiiiiiifffffflllffffff333iiiiiiiii	chr19:18548401-18548662(-)$1	261	128	166	12.8203
:iiiiiiiii"""ddddmmmmdddd22iiiiiiiii::	chr17:43024916-43025152(-)$1	236	0	38	12.9220
c[ggggggg!!dddd[ammmma]ddddggggggg]ccc	chr17:20914473-20914733(-)$1	260	38	76	13.1054
iiiiii"""ccc!!cccoooooocccccciiiiiiiii	chr17:48561995-48562281(+)$1	286	58	96	15.7281
cc!!eeeee####eeeeellleeeee4444eeeeeccc	chr1:32843471-32843698(-)$1	227	75	113	11.8191
"""ccc!!ccc####bbmmmmbbccc22ccc333cccE	chr3:38167829-38168092(-)$1	263	5	43	14.3722
hhhhhh!!a!!bb[cccmmmmccc]bb22a22hhhhhh	chr5:154173500-154173765(+)$1	265	6	44	12.9785
iii!!dddd[ccc[ddddllldddd]ccc333ddddii	chr11:3774437-3774705(-)$1	268	14	52	11.9102
ccbba[dddd"""ddddmmmmdddd333dddd]a]bb]	chr15:34875607-34875933(-)$1	326	72	110	12.9483
iiiiiiiii$$$$$cccmmmmccc333iiiiiiiii55	chr11:61545101-61545353(+)$1	252	201	239	15.8742
b[dddda[dddd"""bbmmmmbb4444dddd]a333dd	chr17:40146817-40147100(-)$1	283	125	163	14.0633
!ffffff[ccc####bbmmmmbb4444cccffffff]f	chr17:76121129-76121388(-)$1	259	146	184	14.2751
b[dddda[dddd"""bbmmmmbb4444dddd]a333dd	chr17:40146761-40147017(-)$1	256	42	80	14.0633
Deeeee!!ffffffcccmmmmccc4444ffffffeeee	chr20:34220167-34220392(-)$1	225	186	224	12.7992
dddd!!bb!!ccc[cccmmmmccc]ccc22bb22dddd	chr1:185280300-185280555(-)$1	255	155	193	12.1295
e"""ffffff[a!!cccmmmmccc4444a]ffffffee	chr12:7283198-7283507(+)$1	309	80	118	14.9327
::==========!!cccooooooccc]==========E	chr12:133208803-133209061(-)$1	258	146	184	13.3347
========!!bb!!ddddllldddd]bb]=========	chr11:65429522-65429780(-)$1	258	121	159	14.2239
d[dddd[bb####ddddmmmmdddd4444bbdddd]dd	chr13:28008976-28009214(+)$1	238	78	116	13.0098
!a[ggggggg"""cccbboooooobb]ccc]ggggggg	chr19:13213141-13213473(-)$1	332	4	42	13.0187
#eeeee!!a[ccc[cccmmmmccc4444ccc]a]eeee	chr15:75129439-75129680(-)$1	241	28	66	16.7014
iiiiiii[a[ccc!!aooooooa22ccc]a]iiiiiii	chr3:197023952-197024219(-)$1	267	54	92	14.8359

#otherMatches

#Seq PSSM
GGGGAGUCCUCUGGCCUGAGGUGGUUUUGGGCUCUUUG	chr22:19124790-19125054(-)$1	264	64	102	15.1946
GGAUUUGGCUGGUGCCCCCUGCUCUGGAUCUCAGCUGG	chr1:1019503-1019788(-)$1	285	215	253	12.6178
CUGGCCCUUGGGAGUCUUUAAGGAGAGAGGGAAAGGGU	chr20:33509475-33509745(+)$1	270	202	240	14.3836
CUCUGGCCAGCACGCUGGACUGCGAGACGGCCCGGCUG	chr13:21750330-21750604(-)$1	274	25	63	13.5210
UUCUGGGGCCUUUGCUGGACGUGGUGAAGGAGAUGCUG	chr10:79556214-79556451(-)$1	237	165	203	12.7494
AUGGGAGACCCGAAGCUACUGAGUGACAGGGUUCCGGA	chr5:177565274-177565524(+)$1	250	32	70	16.0774
CCAUCCAGCCACCUGCUGAUUUGUUAUAGGGUGGAGGG	chr1:55518185-55518477(+)$1	292	61	99	12.0418
GUUCUGCUUUCAAAUUCUAUCGAAAGAAAGUGUUUGAA	chr19:19115260-19115473(-)$1	213	38	76	16.2410
CUGAGUUGUCAAAAGAUUUGAGUUGCAAAGACACUUAG	chr17:76210781-76211022(+)$1	241	130	168	14.3582
AGUAGUGAAAUACAUCAACUUUGAACAGUAUGGGUCAC	chr11:47843197-47843497(-)$1	300	195	233	14.7883
GGCUUCAGACAUUUUCCUUUGGGUAUUAAUGUGUAAGU	chr3:186504188-186504417(+)$1	229	34	72	13.4572
ACCAGGGAAGCCACAUGGUGACAUAUGCCUUCCCUUUG	chr11:118962752-118962982(+)$1	230	130	168	14.1802
GCUGCUUGAAGGUGAGCUUUUACGCGAGCCCGGUGGUG	chr16:89858278-89858535(-)$1	257	190	228	12.7272
CUUACAGCUGUUUGCAGACAAGGUCCCAAAGACAGCAG	chr7:44838711-44839000(+)$1	289	127	165	11.4203
GCUCGGCCGACUGGGCCCGGAGCGGCGCGGAGGCCGGG	chr15:91446106-91446358(+)$1	252	53	91	12.3121
UUCACUAGUUGCAUAAUAAGAAUUAACCCAGAGAGUGA	chr16:29815914-29816186(+)$1	272	37	75	13.9617
UUUUUUAGUUGGCCAAGUGAAAUUUGAUCCACCCUUAA	chr2:39536503-39536760(-)$1	257	92	130	13.3636
GCGUGGCAGUCACUGGCUUGGGCCCCUCUGCCUGUCAC	chr22:42296188-42296468(+)$1	280	58	96	17.8346
GCCCGUGAGGUCCAUCCACCUGGAGGGAGAUGGGCAGC	chr19:17166527-17166788(-)$1	261	71	109	16.5415
CGGGAUGGCGGGAGAGGAUGCCCUGGAGAACCGUCCUC	chr17:77082762-77082985(+)$1	223	166	204	12.5580
CUGGGUGGGUGUGUAGAAUACUCGCACUCCUACUUAGG	chr1:40210945-40211322(+)$1	377	19	57	14.7282
GCUCCCGAAAAGCACGGAUCCGGCUCCACUGGGCAGGG	chr1:110038252-110038558(+)$1	306	189	227	12.3520
GCUUUGGGGCCACAAGUGACCGCUUUGCCCUGAGAGCU	chr5:140048605-140048877(+)$1	272	119	157	13.6405
UUCUUUCUGAUCCAGGGGAUCUGUUCUGGAGCCAGAAG	chr17:35468445-35468689(-)$1	244	96	134	13.2567
CUUAUCUGCCUCUGUCCCCCAGGUGUGAGGUCUGUGGG	chr16:89804151-89804426(+)$1	275	210	248	13.1880
UGACAGUUUGUUAUUUAAUGGCAAGAAGUAAUAAAUUG	chr5:130495145-130495418(-)$1	273	43	81	12.4483
AGCGGGAGGUGGGCCGGGCCUUCGGACGCCCUGUCCCG	chr19:41119663-41119940(+)$1	277	117	155	13.7009
GAGCCUGGGGGCGUGGCUUAGAGUGGGGCACCCUGGGA	chr20:42142910-42143176(+)$1	266	123	161	12.8331
GCCCGGCAGGUGCCCCGGCUCGGGGUCAUGCUUGUCGG	chr19:18548401-18548662(-)$1	261	128	166	12.8203
CCCGCCCGGCUAAUUUGAACGCAAGGCGCCGGGUGGAG	chr17:43024916-43025152(-)$1	236	0	38	12.9220
CUUCCACCCCGGGUUGCCUCUGGAGCUGGGUGGGUGUC	chr17:20914473-20914733(-)$1	260	38	76	13.1054
CUUGAAAUUGGUAAGAUGAAGUAGUCACCUUCAGGCCU	chr17:48561995-48562281(+)$1	286	58	96	15.7281
GCAGCGGGCGGAACAGAGCAUCUCUGAAGAGCCCGGCU	chr1:32843471-32843698(-)$1	227	75	113	11.8191
AGGAUGAGGGUAUCCGCCCCAGCACCACCAUGGAGGGC	chr3:38167829-38168092(-)$1	263	5	43	14.3722
GCCGUGGACGGGGGCGUGGUCGCGGCCGGGGACGCGGC	chr5:154173500-154173765(+)$1	265	6	44	12.9785
GAAAUUGAGAGUUAUAUUAAAAGUACAAUCCACUCAUU	chr11:3774437-3774705(-)$1	268	14	52	11.9102
CCCGCCGCUAUUCAGCUUCCGGGCUAAUUAGCAGUCGC	chr15:34875607-34875933(-)$1	326	72	110	12.9483
CCGCGCCAGAGACAGGUAGGGACCGGGCUGGUGCGGAC	chr11:61545101-61545353(+)$1	252	201	239	15.8742
UUUUCCGGUGCAGUUCAAGAAUGCUAAUGCAGUCAUGG	chr17:40146817-40147100(-)$1	283	125	163	14.0633
UGCGGUGAGCAGCCCCGACCCUGACCAUGCCGCCGCUG	chr17:76121129-76121388(-)$1	259	146	184	14.2751
UUUUCCGGUGCAGUUCAAGAAUGCUAAUGCAGUCAUGG	chr17:40146761-40147017(-)$1	256	42	80	14.0633
GGGACUUAACAUCAAUGAAUUCAUGAGGUGAUGUAGUC	chr20:34220167-34220392(-)$1	225	186	224	12.7992
UGAUUACAUCAUUUUCAAGCCUGAUAGUUUUGGAAUCA	chr1:185280300-185280555(-)$1	255	155	193	12.1295
CUCUGCUCGCGUCCUGCUCCUGUAACAAAGGUGAGUGA	chr12:7283198-7283507(+)$1	309	80	118	14.9327
AAAUACGUGUGCAAGGUGAGAGUGCCAGCGUGCGUGUG	chr12:133208803-133209061(-)$1	258	146	184	13.3347
UUCCCGGCAGGUAAGUGGCCCCCGCGGCGGUCGGGGAG	chr11:65429522-65429780(-)$1	258	121	159	14.2239
UGUGGAAGAACCUAUACAACUGUGUUUAAUCUCCAAAG	chr13:28008976-28009214(+)$1	238	78	116	13.0098
UUGAGGCCGGACCCUCGCGAGACAGCAGAGCCUGGCCU	chr19:13213141-13213473(-)$1	332	4	42	13.0187
UGGGUUCUGCCUCCCUUACCAAAGACCUGAGACUGACC	chr15:75129439-75129680(-)$1	241	28	66	16.7014
GGGAAAAUGCUAGUUUAACAUGAUUCUAUCCUUUUUCC	chr3:197023952-197024219(-)$1	267	54	92	14.8359

#DB
(((((((((...((((......))))..))))))))))	chr22:19124790-19125054(-)$1	1	64	102	15.1946
((((((((((((..((.........))..).)))))))	chr1:1019503-1019788(-)$1	1	215	253	12.6178
((..(((((.....(((....)))..)))))..)))))	chr20:33509475-33509745(+)$1	1	202	240	14.3836
(...((((..(.(((......))).)..)))).)))))	chr13:21750330-21750604(-)$1	1	25	63	13.5210
.)))))))(((((((((....)))))))))((((((((	chr10:79556214-79556451(-)$1	1	165	203	12.7494
.(.((((.(((...(((....)))....))))))).).	chr5:177565274-177565524(+)$1	1	32	70	16.0774
((.((((.((....((......))....)).)))))))	chr1:55518185-55518477(+)$1	1	61	99	12.0418
(((((((((((...(((....))).)))))))...)))	chr19:19115260-19115473(-)$1	1	38	76	16.2410
((((((.(((....(((....))).....)))))))))	chr17:76210781-76211022(+)$1	1	130	168	14.3582
((.(((((.((((.(((....)))...))))...))))	chr11:47843197-47843497(-)$1	1	195	233	14.7883
(((((.(.(((((..((....))....))))).)))))	chr3:186504188-186504417(+)$1	1	34	72	13.4572
((.(((((((.((.(((....))).)).)))))))..)	chr11:118962752-118962982(+)$1	1	130	168	14.1802
.(((((....(((..((......))..))).)))))))	chr16:89858278-89858535(-)$1	1	190	228	12.7272
.)))))(((((((...(((...)))....))))))).(	chr7:44838711-44839000(+)$1	1	127	165	11.4203
((((((((..(((.(((......))).))).)))))))	chr15:91446106-91446358(+)$1	1	53	91	12.3121
.(((((..(((..((((....))))...)))..)))))	chr16:29815914-29816186(+)$1	1	37	75	13.9617
((((((((.(((.(((((...)))))..)))...))))	chr2:39536503-39536760(-)$1	1	92	130	13.3636
(((((((((.((..(((....)))....)).)))))))	chr22:42296188-42296468(+)$1	1	58	96	17.8346
((((((....(((.(((....))))))..)))))))))	chr19:17166527-17166788(-)$1	1	71	109	16.5415
(((((.(((((...(((....)))......))))).))	chr17:77082762-77082985(+)$1	1	166	204	12.5580
(((((((((.((((.((....)))))).))))))))))	chr1:40210945-40211322(+)$1	1	19	57	14.7282
(((((((...(((.((....)))))....))))...))	chr1:110038252-110038558(+)$1	1	189	227	12.3520
((((((((((...((((....)))).))))).))))))	chr5:140048605-140048877(+)$1	1	119	157	13.6405
(((((((((.(((((((......)))))))..))))))	chr17:35468445-35468689(-)$1	1	96	134	13.2567
(((((..(((((...((....))...)))))..)))))	chr16:89804151-89804426(+)$1	1	210	248	13.1880
)))(((((((((((((.........)))))))))))))	chr5:130495145-130495418(-)$1	1	43	81	12.4483
.((((((.(.(((((((....)))...))))).)))))	chr19:41119663-41119940(+)$1	1	117	155	13.7009
((((((((((((.(.(((...))).).)).))))))).	chr20:42142910-42143176(+)$1	1	123	161	12.8331
(.(((((((((((((((...))))))...)))))))))	chr19:18548401-18548662(-)$1	1	128	166	12.8203
.(((((((((...((((....))))..)))))))))..	chr17:43024916-43025152(-)$1	1	0	38	12.9220
(.(((((((..((((.(....).))))))))))).)))	chr17:20914473-20914733(-)$1	1	38	76	13.1054
((((((...(((..(((......)))))))))))))))	chr17:48561995-48562281(+)$1	1	58	96	15.7281
((..(((((....(((((...)))))....))))))))	chr1:32843471-32843698(-)$1	1	75	113	11.8191
...(((..(((....((....)))))..)))...)))(	chr3:38167829-38168092(-)$1	1	5	43	14.3722
((((((..(..((.(((....))).))..)..))))))	chr5:154173500-154173765(+)$1	1	6	44	12.9785
(((..((((.(((.((((...)))).)))...))))))	chr11:3774437-3774705(-)$1	1	14	52	11.9102
(((((.((((...((((....))))...)))).).)).	chr15:34875607-34875933(-)$1	1	72	110	12.9483
(((((((((.....(((....)))...)))))))))..	chr11:61545101-61545353(+)$1	1	201	239	15.8742
(.(((((.((((...((....))....)))).)...))	chr17:40146817-40147100(-)$1	1	125	163	14.0633
.((((((.(((....((....))....))))))))).)	chr17:76121129-76121388(-)$1	1	146	184	14.2751
(.(((((.((((...((....))....)))).)...))	chr17:40146761-40147017(-)$1	1	42	80	14.0633
)(((((..(((((((((....)))....))))))))))	chr20:34220167-34220392(-)$1	1	186	224	12.7992
((((..((..(((.(((....))).)))..))..))))	chr1:185280300-185280555(-)$1	1	155	193	12.1295
(...((((((.(..(((....)))....).))))))))	chr12:7283198-7283507(+)$1	1	80	118	14.9327
..((((((((((..(((......))).)))))))))))	chr12:133208803-133209061(-)$1	1	146	184	13.3347
((((((((..((..((((...)))).)).)))))))))	chr11:65429522-65429780(-)$1	1	121	159	14.2239
(.((((.((....((((....))))....)))))).))	chr13:28008976-28009214(+)$1	1	78	116	13.0098
.(.(((((((...(((((......)).))).)))))))	chr19:13213141-13213473(-)$1	1	4	42	13.0187
.(((((..(.(((.(((....)))....))).).))))	chr15:75129439-75129680(-)$1	1	28	66	16.7014
(((((((.(.(((..(......)..))).).)))))))	chr3:197023952-197024219(-)$1	1	54	92	14.8359

#PSSM
i : 0.18	= : 0.10	c : 0.10	g : 0.08	d : 0.08	e : 0.08	b : 0.06	: : 0.06	! : 0.06	[ : 0.04	h : 0.04	] : 0.02	p : 0.02	f : 0.02	" : 0.02	D : 0.02	# : 0.02	
e : 0.16	i : 0.16	= : 0.10	g : 0.10	[ : 0.10	" : 0.06	d : 0.06	c : 0.06	f : 0.06	a : 0.04	b : 0.04	h : 0.04	: : 0.02	
i : 0.18	e : 0.16	= : 0.12	g : 0.10	[ : 0.10	d : 0.10	" : 0.06	f : 0.06	! : 0.04	h : 0.04	b : 0.04	
g : 0.16	d : 0.16	e : 0.16	i : 0.16	= : 0.14	! : 0.06	" : 0.04	h : 0.04	f : 0.04	c : 0.02	b : 0.02	
e : 0.19	d : 0.16	g : 0.16	i : 0.16	= : 0.14	f : 0.06	h : 0.04	! : 0.04	c : 0.02	a : 0.02	
e : 0.18	d : 0.16	i : 0.16	= : 0.14	g : 0.14	[ : 0.06	f : 0.06	h : 0.04	! : 0.04	c : 0.02	
= : 0.14	g : 0.14	d : 0.12	! : 0.12	i : 0.12	e : 0.10	a : 0.06	f : 0.06	[ : 0.04	# : 0.04	h : 0.02	" : 0.02	b : 0.02	
[ : 0.16	= : 0.14	g : 0.14	e : 0.12	! : 0.10	i : 0.10	d : 0.06	# : 0.04	" : 0.04	b : 0.04	c : 0.02	h : 0.02	f : 0.02	
e : 0.12	i : 0.12	g : 0.12	= : 0.10	c : 0.10	! : 0.08	a : 0.08	d : 0.08	b : 0.04	[ : 0.04	# : 0.04	" : 0.04	f : 0.04	
c : 0.14	[ : 0.14	! : 0.12	g : 0.10	d : 0.08	e : 0.08	# : 0.08	= : 0.06	i : 0.06	" : 0.04	$ : 0.04	f : 0.04	b : 0.02	
c : 0.27	" : 0.10	d : 0.10	# : 0.08	= : 0.06	g : 0.06	e : 0.06	b : 0.06	$ : 0.04	i : 0.04	[ : 0.04	! : 0.04	a : 0.02	f : 0.02	
c : 0.19	" : 0.16	# : 0.12	d : 0.12	b : 0.10	a : 0.04	$ : 0.04	e : 0.04	g : 0.04	= : 0.04	f : 0.04	[ : 0.02	i : 0.02	! : 0.02	
" : 0.19	c : 0.18	! : 0.14	# : 0.12	d : 0.10	$ : 0.04	b : 0.04	g : 0.04	[ : 0.04	f : 0.04	i : 0.02	e : 0.02	= : 0.02	
d : 0.18	! : 0.18	[ : 0.18	" : 0.14	# : 0.08	$ : 0.04	c : 0.04	e : 0.04	f : 0.04	i : 0.02	g : 0.02	= : 0.02	a : 0.02	
c : 0.42	d : 0.18	" : 0.08	b : 0.06	! : 0.06	e : 0.04	[ : 0.04	# : 0.04	i : 0.02	g : 0.02	= : 0.02	f : 0.02	
c : 0.42	b : 0.21	d : 0.16	e : 0.04	o : 0.02	i : 0.02	" : 0.02	g : 0.02	= : 0.02	f : 0.02	[ : 0.02	a : 0.02	
c : 0.42	b : 0.18	d : 0.14	o : 0.08	r : 0.04	e : 0.04	i : 0.02	m : 0.02	g : 0.02	f : 0.02	a : 0.02	
m : 0.62	o : 0.18	r : 0.04	c : 0.04	e : 0.04	d : 0.04	l : 0.02	b : 0.02	
m : 0.62	o : 0.19	l : 0.12	r : 0.04	c : 0.02	
m : 0.62	o : 0.19	l : 0.14	r : 0.04	
m : 0.60	o : 0.19	l : 0.12	r : 0.04	b : 0.02	f : 0.02	
c : 0.36	o : 0.18	b : 0.16	d : 0.14	r : 0.04	e : 0.04	i : 0.02	l : 0.02	f : 0.02	a : 0.02	
c : 0.40	d : 0.16	b : 0.16	o : 0.12	r : 0.04	e : 0.04	i : 0.02	f : 0.02	] : 0.02	a : 0.02	
c : 0.48	d : 0.19	4 : 0.08	r : 0.04	b : 0.04	e : 0.04	i : 0.02	g : 0.02	3 : 0.02	f : 0.02	o : 0.02	2 : 0.02	
d : 0.19	4 : 0.19	c : 0.14	] : 0.12	3 : 0.08	r : 0.04	2 : 0.04	b : 0.04	e : 0.04	i : 0.02	5 : 0.02	6 : 0.02	g : 0.02	f : 0.02	
4 : 0.25	c : 0.14	3 : 0.12	b : 0.08	d : 0.06	2 : 0.06	] : 0.06	a : 0.04	g : 0.04	e : 0.04	i : 0.02	5 : 0.02	6 : 0.02	= : 0.02	f : 0.02	
4 : 0.27	2 : 0.12	3 : 0.12	c : 0.10	b : 0.08	] : 0.08	e : 0.06	g : 0.04	d : 0.04	i : 0.02	5 : 0.02	6 : 0.02	= : 0.02	
4 : 0.19	c : 0.16	2 : 0.14	e : 0.08	d : 0.08	i : 0.06	g : 0.06	3 : 0.06	] : 0.04	= : 0.04	b : 0.04	5 : 0.02	6 : 0.02	
c : 0.21	d : 0.12	= : 0.08	2 : 0.08	e : 0.08	g : 0.08	4 : 0.08	i : 0.06	b : 0.06	] : 0.04	5 : 0.02	6 : 0.02	3 : 0.02	f : 0.02	a : 0.02	
c : 0.19	d : 0.14	i : 0.12	= : 0.10	g : 0.10	e : 0.08	a : 0.06	b : 0.06	] : 0.04	6 : 0.02	4 : 0.02	3 : 0.02	f : 0.02	2 : 0.02	
] : 0.14	d : 0.14	c : 0.14	e : 0.12	= : 0.10	g : 0.10	i : 0.10	f : 0.06	2 : 0.04	b : 0.04	3 : 0.02	
i : 0.14	= : 0.12	d : 0.12	g : 0.12	2 : 0.10	3 : 0.08	e : 0.08	] : 0.08	f : 0.06	c : 0.04	h : 0.02	a : 0.02	b : 0.02	
i : 0.16	g : 0.14	= : 0.12	d : 0.10	2 : 0.08	] : 0.08	3 : 0.08	e : 0.06	a : 0.06	f : 0.06	h : 0.04	c : 0.02	
i : 0.18	g : 0.16	3 : 0.14	= : 0.12	f : 0.10	e : 0.10	d : 0.08	a : 0.04	h : 0.04	2 : 0.02	] : 0.02	
i : 0.18	e : 0.18	= : 0.14	g : 0.14	d : 0.10	f : 0.08	3 : 0.08	h : 0.04	] : 0.04	c : 0.02	
i : 0.18	= : 0.14	g : 0.14	e : 0.14	f : 0.08	] : 0.06	3 : 0.06	c : 0.06	b : 0.04	h : 0.04	d : 0.04	2 : 0.02	
i : 0.16	e : 0.16	= : 0.14	g : 0.12	d : 0.10	f : 0.06	c : 0.06	b : 0.04	: : 0.04	h : 0.04	a : 0.02	2 : 0.02	5 : 0.02	] : 0.02	
i : 0.16	e : 0.16	= : 0.12	g : 0.10	f : 0.10	d : 0.10	c : 0.08	h : 0.04	] : 0.04	E : 0.04	2 : 0.02	: : 0.02	5 : 0.02	

#score	688.3454620902121
#seq	50
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_UTR_m2_run2.txt

#BEAR
eeeeeuuuuuuuuuuuueeeee	chr8:11687651-11687881(+)$1	230	82	104	23.2298
bb!!attttttttttta22bb]	chr18:55274780-55274998(-)$1	218	81	103	20.3455
ffffwwwwwwwwwwwwwwffff	chr17:7215040-7215298(+)$1	258	8	30	21.3307
eeeeeettttttttttteeeee	chr12:6977926-6978171(+)$1	245	168	190	22.3454
fffffftttttttttttfffff	chr19:39330659-39330947(-)$1	288	39	61	21.8099
=[ddddtttttttttttdddd]	chr7:54819974-54820214(-)$1	240	97	119	21.7467
ggggggtttttttttttggggg	chr15:45007678-45008001(+)$1	323	264	286	21.9733
!!a[bbtttttttttttbb]a2	chr11:67353939-67354193(+)$1	254	88	110	21.5314
cccwwwwwwwwwwwwwwccc22	chr6:33257512-33257783(+)$1	271	134	156	20.9986
ddddwwwwwwwwwwwwwwdddd	chr6:32148004-32148251(+)$1	247	63	85	20.8618
gggggwwwwwwwwwwwwwwggg	chr16:85840243-85840564(+)$1	321	65	87	21.3492
eeeeeuuuuuuuuuuuueeeee	chr5:133496652-133496922(-)$1	270	203	225	23.2298
::cccuuuuuuuuuuuuccc::	chr11:61077687-61077933(-)$1	246	199	221	19.4819
eeeeeuuuuuuuuuuuueeeee	chr17:7479860-7480111(+)$1	251	197	219	23.2298
eeeeevvvvvvvvvvvvveeee	chr4:145037919-145038185(-)$1	266	169	191	22.9227
bdddduuuuuuuuuuuudddd]	chr2:85133453-85133702(+)$1	249	47	69	22.2770
[cccvvvvvvvvvvvvvccc]b	chr9:35056965-35057220(-)$1	255	92	114	22.7339
fffffftttttttttttfffff	chr19:39330852-39331102(-)$1	250	194	216	21.8099
ee[bbtttttttttttbbeeee	chr6:27792116-27792355(+)$1	239	149	171	21.1301
ffffwwwwwwwwwwwwwwffff	chr17:46972994-46973278(+)$1	284	202	224	21.3307
ff[bbuuuuuuuuuuuubb]ff	chr16:18800317-18800541(-)$1	224	191	213	22.3527
:eeeeettttttttttteeeee	chr21:33040788-33041044(+)$1	256	184	206	21.4646
"eeeeettttttttttteeeee	chr12:57626948-57627197(+)$1	249	38	60	22.3640
eeeeeuuuuuuuuuuuueeeee	chr17:73042918-73043161(-)$1	243	6	28	23.2298
d[cccuuuuuuuuuuuuccc]d	chr17:37356472-37356704(+)$1	232	55	77	23.3282
:ddddvvvvvvvvvvvvvdddd	chr2:62115475-62115730(-)$1	255	38	60	21.1625
:bb[bbtttttttttttbb]bb	chr1:53504510-53504819(+)$1	309	161	183	19.5879
fdddduuuuuuuuuuuudddd:	chr2:63826216-63826521(+)$1	305	141	163	21.4315
fffffuuuuuuuuuuuufffff	chr8:11695990-11696251(+)$1	261	72	94	22.7026
"""bbuuuuuuuuuuuubb22f	chr19:49507519-49507773(+)$1	254	227	249	21.8394
c!!bbwwwwwwwwwwwwwwbb2	chr5:85913659-85913889(+)$1	230	17	39	20.3512
dddvvvvvvvvvvvvvddddFF	chr19:49510469-49510726(+)$1	257	1	23	19.1220
b!!ccctttttttttttccc22	chrX:153626617-153626836(+)$1	219	194	216	22.1717
!!cccuuuuuuuuuuuucccdd	chr16:30081368-30081626(+)$1	258	182	204	23.3553
c[cccuuuuuuuuuuuuccc]c	chr22:22890357-22890592(-)$1	235	85	107	23.5099
bb[ccctttttttttttccc]b	chr19:46190655-46190908(-)$1	253	76	98	21.9264
ggggggtttttttttttggggg	chr1:150280523-150280805(+)$1	282	1	23	21.9733
[eeeeettttttttttteeeee	chr16:56716291-56716565(+)$1	274	47	69	22.4439
cccccuuuuuuuuuuuucccee	chr6:41755381-41755663(+)$1	282	225	247	23.4065
!!cccuuuuuuuuuuuuccc33	chr12:50152385-50152625(+)$1	240	26	48	23.5716
c[cccuuuuuuuuuuuuccccc	chr12:56554337-56554554(+)$1	217	157	179	23.3442
!!cccuuuuuuuuuuuuccc]c	chr6:26205079-26205331(+)$1	252	25	47	23.5884
fffffftttttttttttfffff	chr1:109968900-109969157(-)$1	257	84	106	21.8099
fffffuuuuuuuuuuuufffff	chr16:70323228-70323482(-)$1	254	37	59	22.7026
hhh[awwwwwwwwwwwwwwa]h	chr7:5567580-5567792(-)$1	212	138	160	20.7816
d[ddddtttttttttttddddd	chr10:27443077-27443397(-)$1	320	201	223	21.4837
!eeeeettttttttttteeeee	chr1:156104559-156104808(+)$1	249	17	39	22.4582
eeeeeuuuuuuuuuuuueeeee	chr8:11695925-11696190(+)$1	265	137	159	23.2298
eeeeeuuuuuuuuuuuueeeee	chr8:11687693-11687929(+)$1	236	40	62	23.2298
ggggvvvvvvvvvvvvvggggg	chr5:137902610-137902849(-)$1	239	171	193	22.6508
ffffwwwwwwwwwwwwwwffff	chr5:137895566-137895812(-)$1	246	60	82	21.3307
dddwwwwwwwwwwwwwwddddd	chr11:73689380-73689623(-)$1	243	157	179	20.5074
hhh[awwwwwwwwwwwwwwa]h	chr7:5567603-5567830(-)$1	227	176	198	20.7816
##bbvvvvvvvvvvvvvbb444	chr6:31704109-31704375(-)$1	266	16	38	21.5814
ffffbbtttttttttttbb]ff	chr17:26903718-26903962(-)$1	244	159	181	21.5079
eeeeevvvvvvvvvvvvveeee	chr16:31202288-31202532(+)$1	244	148	170	22.9227
hhhhhwwwwwwwwwwwwwwhhh	chr1:109957828-109958086(-)$1	258	194	216	19.8731

#otherMatches

#Seq PSSM
AAUCUUCUUAUCUGUCUAGGUU	chr8:11687651-11687881(+)$1	230	82	104	23.2298
CCCACUUUUAAAAAAUGCAGGC	chr18:55274780-55274998(-)$1	218	81	103	20.3455
GGCUUACUUUCUGCCCCUAGCC	chr17:7215040-7215298(+)$1	258	8	30	21.3307
UGUGGCUGCGCAGAACUGCUAC	chr12:6977926-6978171(+)$1	245	168	190	22.3454
GGGGCCCAAGUCGCUACGGCCC	chr19:39330659-39330947(-)$1	288	39	61	21.8099
ACAGUGGUGGCUGAAUACAUUU	chr7:54819974-54820214(-)$1	240	97	119	21.7467
AGUAGUCAUAUCAUAAAGCUGC	chr15:45007678-45008001(+)$1	323	264	286	21.9733
AAUGGCAACGGGAAACAGUGAG	chr11:67353939-67354193(+)$1	254	88	110	21.5314
UCCAGAAGAAGCUACAGGGAGA	chr6:33257512-33257783(+)$1	271	134	156	20.9986
GCCAUCUUCUUCUUUUUUUGGC	chr6:32148004-32148251(+)$1	247	63	85	20.8618
GAUAGUCUUGCCCCAUAACCUG	chr16:85840243-85840564(+)$1	321	65	87	21.3492
UUCCUGAAAGUUGACCAAGGAA	chr5:133496652-133496922(-)$1	270	203	225	23.2298
ACGCCCUCCCUAAUCCAGGCUG	chr11:61077687-61077933(-)$1	246	199	221	19.4819
ACGCUUUCCAGUCUUUCAGCGU	chr17:7479860-7480111(+)$1	251	197	219	23.2298
ACUGAUAAAGGUGAGAAUUCAG	chr4:145037919-145038185(-)$1	266	169	191	22.9227
CGCUCUCCACAGCCAUUGAGCA	chr2:85133453-85133702(+)$1	249	47	69	22.2770
GACCUGUAUGGCUAAGUGGUGG	chr9:35056965-35057220(-)$1	255	92	114	22.7339
GGGGCCCAAGUCGCUACGGCCC	chr19:39330852-39331102(-)$1	250	194	216	21.8099
AGCUGAAGAGUGGUAACACUGA	chr6:27792116-27792355(+)$1	239	149	171	21.1301
UGUUAAGCUUUACCAUUAAACA	chr17:46972994-46973278(+)$1	284	202	224	21.3307
CGUGCUCCAAAGUCAUCGUCCG	chr16:18800317-18800541(-)$1	224	191	213	22.3527
AACACUGUAAUCUUAAAAGUGU	chr21:33040788-33041044(+)$1	256	184	206	21.4646
AGGGGUGAAGGCUGUGGACCCC	chr12:57626948-57627197(+)$1	249	38	60	22.3640
CAGCCCUCAUCUCUAUUGGCUG	chr17:73042918-73043161(-)$1	243	6	28	23.2298
UCCCCUUCGCAGAUAAUGGGAG	chr17:37356472-37356704(+)$1	232	55	77	23.3282
CCGGGUCCAUCCGUCCUUCCCG	chr2:62115475-62115730(-)$1	255	38	60	21.1625
GGUGGUGGAUGUGAAGAAUGGC	chr1:53504510-53504819(+)$1	309	161	183	19.5879
GCUCCAUCCAUCCCCAAGGAGA	chr2:63826216-63826521(+)$1	305	141	163	21.4315
ACCUGACCACUCUCUCCCAGGU	chr8:11695990-11696251(+)$1	261	72	94	22.7026
ggaugagccgccuuuaacagau	chr19:49507519-49507773(+)$1	254	227	249	21.8394
GUCUGAACUACAAUUCCCACAA	chr5:85913659-85913889(+)$1	230	17	39	20.3512
CUCGUCCUUUGUCCCAGAGCUC	chr19:49510469-49510726(+)$1	257	1	23	19.1220
UUCCGACUCUCUCUUUUUCGUU	chrX:153626617-153626836(+)$1	219	194	216	22.1717
CUGCCCCCAACACUCCAGGCCC	chr16:30081368-30081626(+)$1	258	182	204	23.3553
CUGUUUCAUGCCUAACUAGCUG	chr22:22890357-22890592(-)$1	235	85	107	23.5099
CCCGCUCAUCGCCGGCAAGUAG	chr19:46190655-46190908(-)$1	253	76	98	21.9264
CGGUAUUAUGAGAAGCCAUGCC	chr1:150280523-150280805(+)$1	282	1	23	21.9733
CCUCUUCCCGGACUAUAAAGAG	chr16:56716291-56716565(+)$1	274	47	69	22.4439
CCGUAUUUCCCCUUUCUUGCGA	chr6:41755381-41755663(+)$1	282	225	247	23.4065
UUGCUUUACUUUGCCUUGGCUU	chr12:50152385-50152625(+)$1	240	26	48	23.5716
GUGUUUCUUUUUUCCCCAACCU	chr12:56554337-56554554(+)$1	217	157	179	23.3442
AACGCAAGACAGUGACAGCGAU	chr6:26205079-26205331(+)$1	252	25	47	23.5884
CGCAGUUGGUCCUUAGUACUGC	chr1:109968900-109969157(-)$1	257	84	106	21.8099
GUGGCGGGUUGUGGUAGGUCGU	chr16:70323228-70323482(-)$1	254	37	59	22.7026
CCAGCACAAUGAAGAUCAAGGU	chr7:5567580-5567792(-)$1	212	138	160	20.7816
GUGGACAGAGGGGCACAGUUUC	chr10:27443077-27443397(-)$1	320	201	223	21.4837
CUUCCUCCAACCCUUCCAGGAG	chr1:156104559-156104808(+)$1	249	17	39	22.4582
ACCUGACCACUCUCUCCCAGGU	chr8:11695925-11696190(+)$1	265	137	159	23.2298
AAUCUUCUUAUCUGUCUAGGUU	chr8:11687693-11687929(+)$1	236	40	62	23.2298
AUGUGGUUAAUAUGUAGACGUU	chr5:137902610-137902849(-)$1	239	171	193	22.6508
GCAGAGCCCCAAGUAAAGCUGU	chr5:137895566-137895812(-)$1	246	60	82	21.3307
CAGUUUUUCUCCAUCUCCUGGG	chr11:73689380-73689623(-)$1	243	157	179	20.5074
CCAGCACAAUGAAGAUCAAGGU	chr7:5567603-5567830(-)$1	227	176	198	20.7816
CUCCAGUCCCCUCCCCAGGUUC	chr6:31704109-31704375(-)$1	266	16	38	21.5814
GCGGGAGCCACUCAACAUCUCC	chr17:26903718-26903962(-)$1	244	159	181	21.5079
ACUUUAAAUCAGAAUAAAAAAG	chr16:31202288-31202532(+)$1	244	148	170	22.9227
AUUGAGAAAAUUGUAGAGAUUG	chr1:109957828-109958086(-)$1	258	194	216	19.8731

#DB
(((((............)))))	chr8:11687651-11687881(+)$1	1	82	104	23.2298
((..(...........)..)).	chr18:55274780-55274998(-)$1	1	81	103	20.3455
((((..............))))	chr17:7215040-7215298(+)$1	1	8	30	21.3307
((((((...........)))))	chr12:6977926-6978171(+)$1	1	168	190	22.3454
((((((...........)))))	chr19:39330659-39330947(-)$1	1	39	61	21.8099
(.((((...........)))).	chr7:54819974-54820214(-)$1	1	97	119	21.7467
((((((...........)))))	chr15:45007678-45008001(+)$1	1	264	286	21.9733
..(.((...........)).).	chr11:67353939-67354193(+)$1	1	88	110	21.5314
(((..............)))..	chr6:33257512-33257783(+)$1	1	134	156	20.9986
((((..............))))	chr6:32148004-32148251(+)$1	1	63	85	20.8618
(((((..............)))	chr16:85840243-85840564(+)$1	1	65	87	21.3492
(((((............)))))	chr5:133496652-133496922(-)$1	1	203	225	23.2298
..(((............)))..	chr11:61077687-61077933(-)$1	1	199	221	19.4819
(((((............)))))	chr17:7479860-7480111(+)$1	1	197	219	23.2298
(((((.............))))	chr4:145037919-145038185(-)$1	1	169	191	22.9227
(((((............)))).	chr2:85133453-85133702(+)$1	1	47	69	22.2770
.(((.............))).)	chr9:35056965-35057220(-)$1	1	92	114	22.7339
((((((...........)))))	chr19:39330852-39331102(-)$1	1	194	216	21.8099
((.((...........))))))	chr6:27792116-27792355(+)$1	1	149	171	21.1301
((((..............))))	chr17:46972994-46973278(+)$1	1	202	224	21.3307
((.((............)).))	chr16:18800317-18800541(-)$1	1	191	213	22.3527
.(((((...........)))))	chr21:33040788-33041044(+)$1	1	184	206	21.4646
.(((((...........)))))	chr12:57626948-57627197(+)$1	1	38	60	22.3640
(((((............)))))	chr17:73042918-73043161(-)$1	1	6	28	23.2298
(.(((............))).)	chr17:37356472-37356704(+)$1	1	55	77	23.3282
.((((.............))))	chr2:62115475-62115730(-)$1	1	38	60	21.1625
.((.((...........)).))	chr1:53504510-53504819(+)$1	1	161	183	19.5879
)((((............)))).	chr2:63826216-63826521(+)$1	1	141	163	21.4315
(((((............)))))	chr8:11695990-11696251(+)$1	1	72	94	22.7026
...((............))..)	chr19:49507519-49507773(+)$1	1	227	249	21.8394
(..((..............)).	chr5:85913659-85913889(+)$1	1	17	39	20.3512
(((.............))))((	chr19:49510469-49510726(+)$1	1	1	23	19.1220
(..(((...........)))..	chrX:153626617-153626836(+)$1	1	194	216	22.1717
..(((............)))))	chr16:30081368-30081626(+)$1	1	182	204	23.3553
(.(((............))).)	chr22:22890357-22890592(-)$1	1	85	107	23.5099
((.(((...........))).)	chr19:46190655-46190908(-)$1	1	76	98	21.9264
((((((...........)))))	chr1:150280523-150280805(+)$1	1	1	23	21.9733
.(((((...........)))))	chr16:56716291-56716565(+)$1	1	47	69	22.4439
))(((............)))((	chr6:41755381-41755663(+)$1	1	225	247	23.4065
..(((............)))..	chr12:50152385-50152625(+)$1	1	26	48	23.5716
(.(((............)))))	chr12:56554337-56554554(+)$1	1	157	179	23.3442
..(((............))).)	chr6:26205079-26205331(+)$1	1	25	47	23.5884
((((((...........)))))	chr1:109968900-109969157(-)$1	1	84	106	21.8099
(((((............)))))	chr16:70323228-70323482(-)$1	1	37	59	22.7026
(((.(..............).)	chr7:5567580-5567792(-)$1	1	138	160	20.7816
(.((((...........)))))	chr10:27443077-27443397(-)$1	1	201	223	21.4837
.(((((...........)))))	chr1:156104559-156104808(+)$1	1	17	39	22.4582
(((((............)))))	chr8:11695925-11696190(+)$1	1	137	159	23.2298
(((((............)))))	chr8:11687693-11687929(+)$1	1	40	62	23.2298
((((.............)))))	chr5:137902610-137902849(-)$1	1	171	193	22.6508
((((..............))))	chr5:137895566-137895812(-)$1	1	60	82	21.3307
(((..............)))))	chr11:73689380-73689623(-)$1	1	157	179	20.5074
(((.(..............).)	chr7:5567603-5567830(-)$1	1	176	198	20.7816
..((.............))...	chr6:31704109-31704375(-)$1	1	16	38	21.5814
((((((...........)).))	chr17:26903718-26903962(-)$1	1	159	181	21.5079
(((((.............))))	chr16:31202288-31202532(+)$1	1	148	170	22.9227
(((((..............)))	chr1:109957828-109958086(-)$1	1	194	216	19.8731

#PSSM
f : 0.19	e : 0.17	! : 0.08	c : 0.08	d : 0.08	b : 0.07	g : 0.07	: : 0.07	h : 0.05	[ : 0.03	" : 0.03	= : 0.01	# : 0.01	
e : 0.24	f : 0.17	! : 0.10	d : 0.10	[ : 0.08	g : 0.07	b : 0.05	c : 0.05	h : 0.05	: : 0.01	" : 0.01	# : 0.01	
e : 0.22	c : 0.17	f : 0.15	d : 0.14	g : 0.07	! : 0.05	[ : 0.05	h : 0.05	b : 0.03	a : 0.01	" : 0.01	
e : 0.22	c : 0.19	f : 0.15	d : 0.10	b : 0.08	g : 0.07	[ : 0.07	w : 0.03	! : 0.01	v : 0.01	h : 0.01	
e : 0.22	c : 0.17	b : 0.12	w : 0.10	f : 0.08	d : 0.08	v : 0.07	a : 0.05	g : 0.05	h : 0.01	
u : 0.35	w : 0.19	v : 0.12	e : 0.08	f : 0.05	b : 0.05	t : 0.03	d : 0.03	g : 0.03	c : 0.03	
u : 0.35	t : 0.33	w : 0.19	v : 0.12	
u : 0.35	t : 0.33	w : 0.19	v : 0.12	
u : 0.35	t : 0.33	w : 0.19	v : 0.12	
u : 0.35	t : 0.33	w : 0.19	v : 0.12	
u : 0.35	t : 0.33	w : 0.19	v : 0.12	
u : 0.35	t : 0.33	w : 0.19	v : 0.12	
u : 0.35	t : 0.33	w : 0.19	v : 0.12	
u : 0.35	t : 0.33	w : 0.19	v : 0.12	
u : 0.35	t : 0.33	w : 0.19	v : 0.12	
u : 0.35	t : 0.33	w : 0.19	v : 0.12	
u : 0.35	t : 0.29	w : 0.19	v : 0.10	a : 0.01	b : 0.01	d : 0.01	
c : 0.21	e : 0.19	w : 0.15	b : 0.12	d : 0.10	f : 0.08	g : 0.05	v : 0.05	2 : 0.01	
e : 0.24	c : 0.21	f : 0.14	d : 0.14	b : 0.10	w : 0.08	g : 0.05	2 : 0.01	
e : 0.24	c : 0.21	f : 0.14	d : 0.14	g : 0.07	] : 0.07	b : 0.03	a : 0.03	2 : 0.01	4 : 0.01	h : 0.01	
e : 0.26	f : 0.17	d : 0.14	] : 0.12	g : 0.07	b : 0.05	2 : 0.05	a : 0.01	: : 0.01	F : 0.01	3 : 0.01	c : 0.01	4 : 0.01	h : 0.01	
e : 0.26	f : 0.19	d : 0.10	g : 0.07	2 : 0.07	] : 0.05	b : 0.05	c : 0.05	h : 0.05	: : 0.03	F : 0.01	3 : 0.01	4 : 0.01	

#score	1250.7498638308505
#seq	57
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_transcript_m2_run2.txt

#BEAR
ccc####eeeee[bboooooobb]eeeee]ccc]dd	chr22:22051576-22051858(+)$1	282	5	41	14.4191
[iiiiiiiii####cccdddd[==============	chr5:180682122-180682401(-)$1	279	4	40	13.3436
ddd####bb"""cccooooooccc]bb4444ddddc	chr1:201974718-201974993(+)$1	275	21	57	14.3880
##iiiiiiiii!!ddddllldddd22iiiiiiiii5	chrX:73040432-73040717(-)$1	285	204	240	14.1204
d[==========[annnnna]==========dddd4	chr19:46893648-46893930(+)$1	282	228	264	14.7069
=====[a[a[ffffffnnnnnffffff]a]a]====	chr19:1009907-1010239(-)$1	332	243	279	12.6485
eee[a[iiiiiiiiiooooooiiiiiiiii333a]e	chr8:23432637-23433020(+)$1	383	51	87	17.6577
ee[============ppppppp============]e	chr2:219460052-219460301(+)$1	249	45	81	14.4257
===========ddddoooooodddd::bb[cccooo	chr22:19159940-19160259(+)$1	319	164	200	13.6570
"a[ddddiiiiiiiiimmmmiiiiiiiii]dddda]	chr6:53132413-53132641(-)$1	228	163	199	11.7622
cc[ffffff"""cccooooooccc22ffffff]ccc	chr12:110927927-110928272(+)$1	345	151	187	13.5774
eee!!ggggggg[bboooooobb]ggggggg22eee	chr2:153511961-153512232(-)$1	271	48	84	15.4698
iiiiiiii!!cccqqqqqqqqccc333iiiiiiiii	chr1:19949867-19950110(+)$1	243	38	74	14.3195
[ccc####ccc[cccooooooccc]ccc22cccggg	chr17:79879827-79880126(-)$1	299	209	245	15.4484
iiiiiiii"""ddddqqqqqqqqddddiiiiiiiii	chr3:184428264-184428544(-)$1	280	37	73	13.5798
eeeee==========qqqqqqqq==========333	chr9:140167567-140167839(+)$1	272	185	221	14.7060
"==============oooooo==============3	chr16:71962532-71962789(+)$1	257	209	245	21.3854
===========!!bboooooobb]============	chr7:56169249-56169504(-)$1	255	192	228	20.8688
ccc!!==========oooooo==========22ccc	chr8:23429353-23429635(+)$1	282	10	46	18.8802
ccc####eeeee[bboooooobb]eeeee]ccc]ee	chr22:22051446-22051719(+)$1	273	135	171	14.5548
iiiiiiiiiffffffooooooffffff]iiiiiiii	chr3:135868244-135868516(-)$1	272	83	119	16.7290
e####ccc"""ddddooooooddddccc22eeeee]	chr2:55199726-55199969(-)$1	243	77	113	14.5059
""eeeee[bbeeeeeooooooeeeee333bb]eeee	chr2:201717746-201718027(-)$1	281	121	157	13.2303
""a[==========aooooooa]==========]a3	chr19:7978299-7978542(+)$1	243	111	147	20.5502
[bb####eeeee[bboooooobb]eeeee333bb]f	chr6:116956749-116957036(-)$1	287	191	227	14.0638
ggggggg"""eeeeeooooooeeeee22gggggggg	chr12:116397225-116397482(-)$1	257	158	194	15.2344
==========[ddddoooooodddd==========c	chr11:67817870-67818200(+)$1	330	28	64	19.5071
HHHHiiiiiiiii[aooooooa]iiiiiiiiieeee	chr15:34818872-34819154(-)$1	282	73	109	15.0990
eeee####gggggggooooooggggggg333eeeee	chr21:15857468-15857742(-)$1	274	138	174	15.1932
cc[ccc$$$$$ddddoooooodddd]cccccc]ccc	chr10:72521872-72522191(+)$1	319	70	106	13.6931
###bb[a"""ccc[aooooooa]ccc333a]bb444	chr18:8639084-8639400(+)$1	316	217	253	15.6668
b]ccc==============lll==============	chr14:99977563-99977813(+)$1	250	92	128	15.3074
"===========!!ddddmmmmdddd==========	chr3:43761029-43761270(+)$1	241	146	182	14.6910
========[ffffffooooooffffff22=======	chr22:45737114-45737353(+)$1	239	19	55	17.0850
=======[bb[a[ddddmmmmdddd]abb=======	chr17:74266735-74267012(+)$1	277	176	212	13.1353
ggggg[ccc[bbcccooooooccc]bb]ccc]gggg	chr1:113212900-113213157(+)$1	257	183	219	15.0386
ddd[ggggggg!!bboooooobb]ggggggg]dddd	chr17:38154019-38154277(+)$1	258	140	176	15.3735
"=============qqqqqqqq=============2	chr17:4848920-4849215(-)$1	295	227	263	16.6613
c[a[dddd[ccccccooooooccc]ccc]dddd]a]	chr22:22892403-22892615(-)$1	212	53	89	14.1784
iiiiiii####ddddoooooodddd22iiiiiiiii	chr5:179263881-179264228(+)$1	347	236	272	17.6413
iiiiiiii####cccooooooccc333iiiiiiiii	chr14:70238326-70238557(+)$1	231	23	59	19.1859
=============[bbnnnnnbb]============	chr13:92005962-92006193(+)$1	231	50	86	17.0301
=======[eeeeeqqqqqqqqeeeee]=========	chr11:70281280-70281528(+)$1	248	83	119	13.6629
#==========="""ammmma22===========dd	chr15:34817461-34817735(-)$1	274	188	224	15.9409
f[iiiiiiiiiddddmmmmdddd333iiiiiiiiif	chr3:48555189-48555423(-)$1	234	145	181	13.5393
####dddd[bb!!bboooooobb22bb]dddd333h	chrX:151121536-151121792(-)$1	256	70	106	13.5077
"""==========[aqqqqqqqqa==========33	chr12:124105148-124105419(+)$1	271	161	197	16.4659
d####dddd[eeeeeooooooeeeeedddd333ddd	chr3:195776073-195776319(-)$1	246	68	104	12.9837
===========!!bboooooobb22===========	chr19:10941913-10942146(+)$1	233	110	146	20.3686
""iiiiiiiii!!bbqqqqqqqqbb]iiiiiiiii5	chr22:19318287-19318573(-)$1	286	213	249	13.7241

#otherMatches

#Seq PSSM
GGGAGAAGCAGGUUUGGAGAGGACCCUGUGCCCACC	chr22:22051576-22051858(+)$1	282	5	41	14.4191
CUUGGGUGUAAAAUGACUAAACAGAUGAAAAGGCUU	chr5:180682122-180682401(-)$1	279	4	40	13.3436
GUGGCCCAGACCCUCGCCAAGGAGACUUUUGCAUCC	chr1:201974718-201974993(+)$1	275	21	57	14.3880
AAUAAAAUAUACUGUUUUGAAAACUUUGUAUUUUGA	chrX:73040432-73040717(-)$1	285	204	240	14.1204
GUGGGGUGGGGCCGAGUGGCUGCCCUGCCCCCCUCA	chr19:46893648-46893930(+)$1	282	228	264	14.7069
CGGCUUGGGGUGGGGCCUCGCGCCCUAGUGCCGGCC	chr19:1009907-1010239(-)$1	332	243	279	12.6485
UAUGCCAAUAAGGUUUUAUUUAACUUUAUUUAAGGA	chr8:23432637-23433020(+)$1	383	51	87	17.6577
GAUGGAGGGCUGGGUUCUGCUCACUCAGUCuuuuuu	chr2:219460052-219460301(+)$1	249	45	81	14.4257
GGUGGCCUUGUCAUGUUUAUCCGUGAUCCUCAGUGU	chr22:19159940-19160259(+)$1	319	164	200	13.6570
CGUACUAUAGGGAGCCUAUUGGUUCUCUAUUAGUCU	chr6:53132413-53132641(-)$1	228	163	199	11.7622
GUAAUUGGUCUGAUGUAGUUCCAUGUACCAAUGAUA	chr12:110927927-110928272(+)$1	345	151	187	13.5774
UGAGGUGAUGUUUAAAAAAACUUUAACAUCAAAUCA	chr2:153511961-153512232(-)$1	271	48	84	15.4698
AUGGGGAGCUUUAUCUUCUCUUAAUAAUUCCCUAUU	chr1:19949867-19950110(+)$1	243	38	74	14.3195
UGGGCCCAGGGGCUGUGCACUCAGGCCUGACCCGUU	chr17:79879827-79880126(-)$1	299	209	245	15.4484
AUGAGAUUGGUCUACUUUUUCCUGUAGGAUUUUAUU	chr3:184428264-184428544(-)$1	280	37	73	13.5798
GCCUUGGGGUUGUGGAGAUGGACCCGUGACCUCGUG	chr9:140167567-140167839(+)$1	272	185	221	14.7060
GCUAAGGUCAUCCUUCCCCACAGGGGUGGCUUUGGG	chr16:71962532-71962789(+)$1	257	209	245	21.3854
GAUUUUAUUCUUUGUGAGUUAAUUAGAAUAAAGUCA	chr7:56169249-56169504(-)$1	255	192	228	20.8688
ACUAAAGGAAGGGAUCAUAGAAUCUUUUCUUAAAGU	chr8:23429353-23429635(+)$1	282	10	46	18.8802
GGGAGAAGCAGGUUUGGAGAGGACCCUGUGCCCACC	chr22:22051446-22051719(+)$1	273	135	171	14.5548
uuUUGGUCUCUUUUGGUGGGGUGGGGGUGGGCUAAA	chr3:135868244-135868516(-)$1	272	83	119	16.7290
UUGAUGCAGAUUUUCUGAAAUGAAAUGUUUGUUUAG	chr2:55199726-55199969(-)$1	243	77	113	14.5059
UGUUUGGGUAAUUUGGUUCAUUAAGUACAUAGCUAA	chr2:201717746-201718027(-)$1	281	121	157	13.2303
ugagggugggggugcgagguggUCACUCCCAUCGUG	chr19:7978299-7978542(+)$1	243	111	147	20.5502
UUAUACCUAUCAUACUUCAUUGUUUGGUAAAUUAUU	chr6:116956749-116957036(-)$1	287	191	227	14.0638
AAGAUGAAGAUUGUAAACUUGUAUAAAAUUAUCUUG	chr12:116397225-116397482(-)$1	257	158	194	15.2344
GGGGGCUGGCAGGCACCCACUUGCCGUUGGCCCCCA	chr11:67817870-67818200(+)$1	330	28	64	19.5071
UCUGGGCUCAUGAAGAUAUUGCAUCGUGAGCUGCAG	chr15:34818872-34819154(-)$1	282	73	109	15.0990
UUUAAAAUUUGACAUACCCUAAUGUUAAUAAUAAAA	chr21:15857468-15857742(-)$1	274	138	174	15.1932
CAAGGCAAAGGGGCUGUUCUGAGCCAGCCUGGAGGA	chr10:72521872-72522191(+)$1	319	70	106	13.6931
CUUGAGUGUUGUGGUAUGAAAAGCAUUGUGGUCUUU	chr18:8639084-8639400(+)$1	316	217	253	15.6668
AUGGCUUUUUUUUUUUCCUCCAGGGAGAAGGGGAGA	chr14:99977563-99977813(+)$1	250	92	128	15.3074
UGCAGUUUUAAAAUGAGGAAAACUUCUUUGAAACUG	chr3:43761029-43761270(+)$1	241	146	182	14.6910
UUUGGAAUUAGGUUGUUUUAGUAACUUCUGUUCCAA	chr22:45737114-45737353(+)$1	239	19	55	17.0850
UGAUGGAGUGAUGUUGUGGGCACAAGGCAUCUGUCA	chr17:74266735-74267012(+)$1	277	176	212	13.1353
CAUGAAGCCCUGCUACUGAUUUAGACAAGGUAUUAU	chr1:113212900-113213157(+)$1	257	183	219	15.0386
GUUUUUUGAAGCUUCGAUUAUGAUUUUUAAACAAUA	chr17:38154019-38154277(+)$1	258	140	176	15.3735
UUGGGGUUUUUUUUUUCUGAAUAAAAAAGAUUCUAC	chr17:4848920-4849215(-)$1	295	227	263	16.6613
ACCUGUUCCUCAAGGAAGGUGCCUGUGAUGAAUUGU	chr22:22892403-22892615(-)$1	212	53	89	14.1784
GAGCUGCCUCCUGGUCUCUUCACCACUGUAGUUCUC	chr5:179263881-179264228(+)$1	347	236	272	17.6413
UGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAA	chr14:70238326-70238557(+)$1	231	23	59	19.1859
GGAGGGGAAAAAAUGGGUCAACUUUUUUUUUUUUUU	chr13:92005962-92006193(+)$1	231	50	86	17.0301
uuuuuuuuuuuuuuuuuuuuuGAAGGUGGGGAGGGG	chr11:70281280-70281528(+)$1	248	83	119	13.6629
AAGUGGCAUUAUUGACUGCUGGUGUGAUGCUACUGU	chr15:34817461-34817735(-)$1	274	188	224	15.9409
GGCUGAGGUGUAGCUGAUUGGCUGCCACAUUUCGGC	chr3:48555189-48555423(-)$1	234	145	181	13.5393
CUUCUAUAUGCUAAGUGAAAUCUGUGUCUGUAAUUU	chrX:151121536-151121792(-)$1	256	70	106	13.5077
UUCAGUUAUCCUUUGAUGUCCUGCAGGGGUGGCUAA	chr12:124105148-124105419(+)$1	271	161	197	16.4659
UGUAAACAAAUGAUAUGUCCUUAUCAUUGUAUAAAA	chr3:195776073-195776319(-)$1	246	68	104	12.9837
AGCCUGGGGGGGACUCUACCAAGGUCUUCUUGGGCU	chr19:10941913-10942146(+)$1	233	110	146	20.3686
ACUGAAAUUAACUUGUCUAUCUUCAUUUGGUUUUAA	chr22:19318287-19318573(-)$1	286	213	249	13.7241

#DB
(((....(((((.((......)).))))).))).))	chr22:22051576-22051858(+)$1	1	5	41	14.4191
.(((((((((....(((((((.((((((((((((((	chr5:180682122-180682401(-)$1	1	4	40	13.3436
(((....((...(((......))).))....)))))	chr1:201974718-201974993(+)$1	1	21	57	14.3880
..(((((((((..((((...))))..))))))))).	chrX:73040432-73040717(-)$1	1	204	240	14.1204
(.((((((((((.(.....).)))))))))))))).	chr19:46893648-46893930(+)$1	1	228	264	14.7069
(((((.(.(.((((((.....)))))).).).))))	chr19:1009907-1010239(-)$1	1	243	279	12.6485
(((.(.(((((((((......)))))))))...).)	chr8:23432637-23433020(+)$1	1	51	87	17.6577
((.((((((((((((.......)))))))))))).)	chr2:219460052-219460301(+)$1	1	45	81	14.4257
)))))))))))((((......))))..((.(((...	chr22:19159940-19160259(+)$1	1	164	200	13.6570
.(.(((((((((((((....))))))))).))))).	chr6:53132413-53132641(-)$1	1	163	199	11.7622
((.((((((...(((......)))..)))))).)))	chr12:110927927-110928272(+)$1	1	151	187	13.5774
(((..(((((((.((......)).)))))))..)))	chr2:153511961-153512232(-)$1	1	48	84	15.4698
((((((((..(((........)))...)))))))))	chr1:19949867-19950110(+)$1	1	38	74	14.3195
.(((....(((.(((......))).)))..))))))	chr17:79879827-79880126(-)$1	1	209	245	15.4484
((((((((...((((........)))))))))))))	chr3:184428264-184428544(-)$1	1	37	73	13.5798
(((((((((((((((........))))))))))...	chr9:140167567-140167839(+)$1	1	185	221	14.7060
.((((((((((((((......)))))))))))))).	chr16:71962532-71962789(+)$1	1	209	245	21.3854
(((((((((((..((......)).))))))))))))	chr7:56169249-56169504(-)$1	1	192	228	20.8688
(((..((((((((((......))))))))))..)))	chr8:23429353-23429635(+)$1	1	10	46	18.8802
(((....(((((.((......)).))))).))).))	chr22:22051446-22051719(+)$1	1	135	171	14.5548
(((((((((((((((......)))))).))))))))	chr3:135868244-135868516(-)$1	1	83	119	16.7290
(....(((...((((......)))))))..))))).	chr2:55199726-55199969(-)$1	1	77	113	14.5059
..(((((.(((((((......)))))...)).))))	chr2:201717746-201718027(-)$1	1	121	157	13.2303
..(.(((((((((((......).)))))))))).).	chr19:7978299-7978542(+)$1	1	111	147	20.5502
.((....(((((.((......)).)))))...)).)	chr6:116956749-116957036(-)$1	1	191	227	14.0638
(((((((...(((((......)))))..)))))))(	chr12:116397225-116397482(-)$1	1	158	194	15.2344
((((((((((.((((......)))))))))))))))	chr11:67817870-67818200(+)$1	1	28	64	19.5071
(((((((((((((.(......).)))))))))((((	chr15:34818872-34819154(-)$1	1	73	109	15.0990
((((....(((((((......)))))))...)))))	chr21:15857468-15857742(-)$1	1	138	174	15.1932
((.(((.....((((......)))).)))))).)))	chr10:72521872-72522191(+)$1	1	70	106	13.6931
...((.(...(((.(......).)))...).))...	chr18:8639084-8639400(+)$1	1	217	253	15.6668
).)))((((((((((((((...))))))))))))))	chr14:99977563-99977813(+)$1	1	92	128	15.3074
.(((((((((((..((((....))))))))))))))	chr3:43761029-43761270(+)$1	1	146	182	14.6910
((((((((.((((((......))))))..)))))))	chr22:45737114-45737353(+)$1	1	19	55	17.0850
(((((((.((.(.((((....)))).))))))))))	chr17:74266735-74267012(+)$1	1	176	212	13.1353
(((((.(((.(((((......))).)).))).))))	chr1:113212900-113213157(+)$1	1	183	219	15.0386
(((.(((((((..((......)).))))))).))))	chr17:38154019-38154277(+)$1	1	140	176	15.3735
.(((((((((((((........))))))))))))).	chr17:4848920-4849215(-)$1	1	227	263	16.6613
(.(.((((.((((((......))).))).)))).).	chr22:22892403-22892615(-)$1	1	53	89	14.1784
(((((((....((((......))))..)))))))))	chr5:179263881-179264228(+)$1	1	236	272	17.6413
((((((((....(((......)))...)))))))))	chr14:70238326-70238557(+)$1	1	23	59	19.1859
(((((((((((((.((.....)).))))))))))))	chr13:92005962-92006193(+)$1	1	50	86	17.0301
(((((((.(((((........))))).)))))))))	chr11:70281280-70281528(+)$1	1	83	119	13.6629
.(((((((((((...(....)..)))))))))))))	chr15:34817461-34817735(-)$1	1	188	224	15.9409
(.(((((((((((((....))))...))))))))))	chr3:48555189-48555423(-)$1	1	145	181	13.5393
....((((.((..((......))..)).))))...)	chrX:151121536-151121792(-)$1	1	70	106	13.5077
...((((((((((.(........)))))))))))..	chr12:124105148-124105419(+)$1	1	161	197	16.4659
(....((((.(((((......)))))))))...)))	chr3:195776073-195776319(-)$1	1	68	104	12.9837
(((((((((((..((......))..)))))))))))	chr19:10941913-10942146(+)$1	1	110	146	20.3686
..(((((((((..((........)).))))))))).	chr22:19318287-19318573(-)$1	1	213	249	13.7241

#PSSM
= : 0.18	" : 0.16	c : 0.12	e : 0.12	i : 0.10	d : 0.08	# : 0.08	[ : 0.06	g : 0.04	H : 0.02	b : 0.02	f : 0.02	
= : 0.25	c : 0.12	i : 0.12	# : 0.10	e : 0.10	" : 0.08	[ : 0.06	d : 0.04	g : 0.04	a : 0.02	b : 0.02	H : 0.02	] : 0.02	
= : 0.27	i : 0.18	c : 0.10	e : 0.10	[ : 0.08	# : 0.08	d : 0.04	a : 0.04	g : 0.04	b : 0.02	H : 0.02	" : 0.02	
= : 0.32	i : 0.18	# : 0.14	[ : 0.08	c : 0.06	e : 0.06	! : 0.04	g : 0.04	d : 0.02	f : 0.02	H : 0.02	b : 0.02	
= : 0.34	i : 0.19	# : 0.16	d : 0.06	g : 0.06	! : 0.04	e : 0.04	c : 0.04	a : 0.02	f : 0.02	b : 0.02	
= : 0.38	i : 0.19	# : 0.12	[ : 0.08	d : 0.08	g : 0.06	c : 0.04	f : 0.02	e : 0.02	
= : 0.38	i : 0.21	# : 0.12	d : 0.08	g : 0.06	a : 0.04	c : 0.04	f : 0.02	e : 0.02	$ : 0.02	
= : 0.34	i : 0.21	[ : 0.08	e : 0.06	# : 0.06	d : 0.06	g : 0.04	c : 0.04	" : 0.04	b : 0.02	f : 0.02	$ : 0.02	
= : 0.32	i : 0.16	e : 0.08	" : 0.08	b : 0.06	g : 0.06	[ : 0.06	c : 0.04	# : 0.04	a : 0.02	f : 0.02	! : 0.02	$ : 0.02	d : 0.02	
= : 0.32	i : 0.14	" : 0.12	e : 0.08	[ : 0.06	g : 0.06	b : 0.06	c : 0.04	f : 0.04	# : 0.04	! : 0.02	$ : 0.02	
= : 0.30	e : 0.14	i : 0.12	" : 0.08	c : 0.08	# : 0.06	f : 0.06	g : 0.06	[ : 0.04	b : 0.04	$ : 0.02	
= : 0.23	e : 0.14	d : 0.14	! : 0.12	f : 0.06	i : 0.06	c : 0.06	# : 0.04	" : 0.04	g : 0.04	[ : 0.02	a : 0.02	b : 0.02	
= : 0.18	c : 0.16	! : 0.14	d : 0.14	[ : 0.12	e : 0.08	f : 0.06	i : 0.06	# : 0.02	g : 0.02	" : 0.02	
b : 0.18	d : 0.18	= : 0.14	c : 0.12	[ : 0.08	f : 0.06	e : 0.06	i : 0.04	q : 0.04	# : 0.02	a : 0.02	g : 0.02	! : 0.02	" : 0.02	
b : 0.19	d : 0.19	c : 0.14	= : 0.10	a : 0.08	f : 0.06	q : 0.06	e : 0.06	i : 0.04	n : 0.02	g : 0.02	" : 0.02	
o : 0.62	q : 0.14	d : 0.06	c : 0.02	n : 0.02	f : 0.02	p : 0.02	i : 0.02	= : 0.02	b : 0.02	a : 0.02	m : 0.02	
o : 0.62	q : 0.14	d : 0.06	n : 0.06	m : 0.06	c : 0.02	p : 0.02	= : 0.02	
o : 0.62	q : 0.14	m : 0.08	n : 0.06	d : 0.04	l : 0.02	p : 0.02	= : 0.02	
o : 0.62	q : 0.14	m : 0.10	n : 0.06	d : 0.02	l : 0.02	p : 0.02	= : 0.02	
o : 0.62	q : 0.14	m : 0.08	d : 0.04	l : 0.04	n : 0.04	a : 0.02	p : 0.02	
o : 0.62	q : 0.14	d : 0.06	n : 0.04	m : 0.04	] : 0.02	p : 0.02	i : 0.02	l : 0.02	a : 0.02	
b : 0.18	d : 0.16	c : 0.14	q : 0.10	e : 0.08	= : 0.06	f : 0.06	a : 0.06	i : 0.04	[ : 0.02	p : 0.02	g : 0.02	l : 0.02	m : 0.02	2 : 0.02	
b : 0.18	d : 0.18	= : 0.14	c : 0.14	q : 0.08	e : 0.08	f : 0.06	] : 0.06	i : 0.04	g : 0.02	2 : 0.02	
= : 0.19	d : 0.18	c : 0.16	] : 0.14	e : 0.08	f : 0.06	i : 0.06	2 : 0.04	g : 0.02	3 : 0.02	a : 0.02	b : 0.02	
= : 0.25	d : 0.16	e : 0.14	] : 0.08	2 : 0.08	f : 0.06	i : 0.06	g : 0.06	3 : 0.06	c : 0.02	b : 0.02	
= : 0.30	e : 0.14	c : 0.08	b : 0.06	2 : 0.06	f : 0.06	i : 0.06	g : 0.06	3 : 0.06	] : 0.06	d : 0.04	: : 0.02	
= : 0.32	i : 0.12	f : 0.08	3 : 0.08	c : 0.08	e : 0.06	b : 0.06	g : 0.06	d : 0.04	2 : 0.04	: : 0.02	a : 0.02	] : 0.02	
= : 0.34	i : 0.19	] : 0.08	c : 0.08	e : 0.06	g : 0.06	b : 0.04	3 : 0.04	2 : 0.04	4 : 0.02	f : 0.02	d : 0.02	
= : 0.34	i : 0.21	e : 0.06	g : 0.06	2 : 0.06	3 : 0.06	b : 0.04	c : 0.04	d : 0.04	4 : 0.02	a : 0.02	f : 0.02	] : 0.02	
= : 0.38	i : 0.19	] : 0.08	g : 0.06	d : 0.06	2 : 0.04	3 : 0.04	c : 0.04	4 : 0.02	[ : 0.02	f : 0.02	b : 0.02	a : 0.02	
= : 0.38	i : 0.18	c : 0.12	3 : 0.08	d : 0.06	g : 0.06	4 : 0.02	a : 0.02	f : 0.02	e : 0.02	b : 0.02	] : 0.02	
= : 0.34	i : 0.18	c : 0.10	d : 0.10	] : 0.08	3 : 0.06	2 : 0.04	e : 0.04	f : 0.02	g : 0.02	b : 0.02	
= : 0.36	i : 0.16	d : 0.10	c : 0.08	e : 0.08	3 : 0.06	] : 0.04	2 : 0.04	b : 0.04	g : 0.04	
= : 0.32	i : 0.16	d : 0.10	e : 0.10	] : 0.08	c : 0.06	g : 0.06	3 : 0.04	a : 0.02	o : 0.02	b : 0.02	4 : 0.02	
= : 0.25	i : 0.16	d : 0.12	e : 0.12	] : 0.06	a : 0.06	c : 0.06	g : 0.06	3 : 0.06	o : 0.02	4 : 0.02	
= : 0.19	e : 0.14	c : 0.10	i : 0.10	d : 0.08	3 : 0.08	] : 0.06	g : 0.06	5 : 0.04	4 : 0.04	f : 0.04	o : 0.02	2 : 0.02	h : 0.02	

#score	772.9157161500883
#seq	50
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_CDS_m1_run2.txt

#BEAR
fff[dddd"""eeeee[a[bblllbb]a]eeeee]dddd	chr7:45144136-45144441(-)$1	305	95	134	17.6846
""iiiiiiiii[ccc[cccooooooccc22ccciiiiii	chr16:85689999-85690336(+)$1	337	279	318	16.0270
======bb!!bb[bbaddddmmmmdddd]a]bb22bb22	chr17:80045175-80045413(-)$1	238	6	45	16.5767
"""cccccc[eeeeeccc[ammmmaccc]eeeee333cc	chr1:234744798-234745071(-)$1	273	207	246	19.8761
ffbb[dddd!!ffffff!!ammmma22ffffff22dddd	chr1:984893-985170(+)$1	277	91	130	18.0070

#otherMatches

#Seq PSSM
GGCCAUUGAGCUGACCUCUGCGCGGCUGUGGUUGACAGU	chr7:45144136-45144441(-)$1	305	95	134	17.6846
GGCGUGGGUGGGCUGUGCUGGGCAAGGUCUCAGCCACCC	chr16:85689999-85690336(+)$1	337	279	318	16.0270
ACAGCACCAACCAGGCCCUGUGUGCAGGUGACUCGGGGA	chr17:80045175-80045413(-)$1	238	6	45	16.5767
CCCCGCGCCUCGGCUCUGACUUCGGCAGCAGCCGCCCGG	chr1:234744798-234745071(-)$1	273	207	246	19.8761
GUGCAUCCGUUUGCUGGACGUCAACAACCAGCGCCUGGA	chr1:984893-985170(+)$1	277	91	130	18.0070

#DB
(((.((((...(((((.(.((...)).).))))).))))	chr7:45144136-45144441(-)$1	1	95	134	17.6846
..(((((((((.(((.(((......)))..)))))))))	chr16:85689999-85690336(+)$1	1	279	318	16.0270
((((((((..((.(((((((....)))).).))..))..	chr17:80045175-80045413(-)$1	1	6	45	16.5767
...((((((.((((((((.(....)))).)))))...))	chr1:234744798-234745071(-)$1	1	207	246	19.8761
))((.((((..((((((..(....)..))))))..))))	chr1:984893-985170(+)$1	1	91	130	18.0070

#PSSM
f : 0.40	" : 0.40	= : 0.20	
f : 0.40	" : 0.40	= : 0.20	
f : 0.20	i : 0.20	= : 0.20	" : 0.20	b : 0.20	
[ : 0.20	i : 0.20	= : 0.20	c : 0.20	b : 0.20	
d : 0.20	i : 0.20	= : 0.20	c : 0.20	[ : 0.20	
d : 0.40	i : 0.20	= : 0.20	c : 0.20	
d : 0.40	i : 0.20	b : 0.20	c : 0.20	
d : 0.40	i : 0.20	b : 0.20	c : 0.20	
" : 0.20	i : 0.20	! : 0.20	c : 0.20	d : 0.20	
! : 0.40	" : 0.20	i : 0.20	[ : 0.20	
" : 0.20	i : 0.20	b : 0.20	e : 0.20	! : 0.20	
e : 0.40	[ : 0.20	b : 0.20	f : 0.20	
e : 0.40	c : 0.20	[ : 0.20	f : 0.20	
e : 0.40	c : 0.20	b : 0.20	f : 0.20	
e : 0.40	c : 0.20	b : 0.20	f : 0.20	
e : 0.20	[ : 0.20	a : 0.20	c : 0.20	f : 0.20	
c : 0.40	[ : 0.20	d : 0.20	f : 0.20	
c : 0.40	a : 0.20	d : 0.20	! : 0.20	
[ : 0.40	c : 0.20	d : 0.20	! : 0.20	
a : 0.40	b : 0.20	o : 0.20	d : 0.20	
m : 0.60	b : 0.20	o : 0.20	
m : 0.60	l : 0.20	o : 0.20	
m : 0.60	l : 0.20	o : 0.20	
m : 0.60	l : 0.20	o : 0.20	
a : 0.40	b : 0.20	o : 0.20	d : 0.20	
c : 0.40	b : 0.20	d : 0.20	2 : 0.20	
c : 0.40	] : 0.20	d : 0.20	2 : 0.20	
c : 0.40	a : 0.20	d : 0.20	f : 0.20	
] : 0.60	2 : 0.20	f : 0.20	
e : 0.40	2 : 0.20	a : 0.20	f : 0.20	
e : 0.40	c : 0.20	] : 0.20	f : 0.20	
e : 0.40	c : 0.20	b : 0.20	f : 0.20	
e : 0.40	c : 0.20	b : 0.20	f : 0.20	
e : 0.40	2 : 0.40	i : 0.20	
2 : 0.40	] : 0.20	i : 0.20	3 : 0.20	
d : 0.40	i : 0.20	b : 0.20	3 : 0.20	
d : 0.40	i : 0.20	b : 0.20	3 : 0.20	
d : 0.40	i : 0.20	2 : 0.20	c : 0.20	
d : 0.40	i : 0.20	2 : 0.20	c : 0.20	

#score	88.17158868463996
#seq	5
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_CDS_m1_run1.txt

#BEAR
dd"""cccccc[ddddoooooodddd]ccc22ccc444	chr7:1886810-1887035(-)$1	225	66	104	13.7701
ee[ffffff[a[ddddmmmmdddd]a]ffffff]eeee	chr19:2270266-2270595(+)$1	329	42	80	12.6645
d:===========[bbmmmmbb]===========:ggg	chr11:637280-637537(+)$1	257	130	168	11.5979
[bb[dddd####ddddmmmmdddd4444dddd]bb]bb	chr11:71726062-71726349(-)$1	287	110	148	13.6637
=========ddddcccmmmmccc]dddd]=========	chr16:31091061-31091337(+)$1	276	154	192	13.8993
iiiiiiiii[bb[cccmmmmcccbb22iiiiiiiii22	chr1:27876158-27876430(-)$1	272	55	93	13.6785
h:ggggggg"""a!!cccmmmmccc22a4444gggggg	chr1:228582623-228582876(-)$1	253	212	250	11.8200
chhhhhhhh"""cccooooooccchhhhhhhh333ccc	chr11:71725391-71725661(-)$1	270	129	167	11.3647
dd[ccc[bb####cccnnnnnccc4444bb]ccc]ddd	chr17:17068556-17068843(+)$1	287	181	219	13.2305
ggggggccc"""ddddmmmmdddd333ccc22gggggg	chr21:47663450-47663764(+)$1	314	119	157	17.3880
DDDbb[ccc"""ddddmmmmdddd333ccc]bb:gggg	chr17:17067597-17067865(+)$1	268	161	199	11.9330
h"""dddd!!ddddoooooodddd22dddd333hhhhh	chr22:50277366-50277658(+)$1	292	46	84	11.7858
$$$==============lll==============eeee	chr11:62293165-62293422(-)$1	257	157	195	13.2656
"""ggggggg!!acccmmmmccc4444a22ggggggg]	chr11:62298247-62298515(-)$1	268	43	81	16.0037
d"""bb[bb"""ddddnnnnndddd333bb]bb333dd	chr11:71724678-71724924(-)$1	246	85	123	13.2148
b####dddd"""ddddmmmmdddd22dddd4444bb]b	chr3:9851513-9851805(+)$1	292	15	53	14.2167
gggg[gggggggddddllldddd]ggggggg]gggggg	chr21:34923258-34923516(+)$1	258	192	230	13.1669
&ccc!!==========mmmm==========22ccc444	chr8:144996917-144997168(-)$1	251	152	190	13.7355
dddggggggg"""cccmmmmccc333ggggggg22ddd	chr1:2160051-2160335(+)$1	284	18	56	14.8783
!bb[ccc"""ffffffmmmmffffff333cccbb333e	chr22:21799745-21800020(+)$1	275	166	204	11.1675
!!ggggggg"""ddddlllddddggggggg22dddd::	chr19:5719919-5720189(-)$1	270	24	62	12.2231
ddd"""ccc"""ddddmmmmdddd22ccc22dddd22=	chr16:87735911-87736173(-)$1	262	169	207	15.3481
ff####ccc"""eeeeemmmmeeeeeccc]ffffff]a	chr8:144671769-144672007(-)$1	238	46	84	11.7268
c!!iiiiiiiiiooooooiiiiiiiiiccc========	chr4:1231779-1232026(-)$1	247	126	164	11.4117
$$$$ccc"""a[eeeeemmmmeeeee]a333cccccc2	chr11:62289982-62290225(-)$1	243	170	208	11.5183
=========!!ddddccclllccc22dddd]=======	chr4:1729800-1730054(+)$1	254	121	159	13.9677
eee"""dddd!!ddddllldddd]dddd]eeeee====	chr11:62290903-62291142(-)$1	239	83	121	12.1966
iiiiieeeee[addddllldddd]a22eeeee]iiiii	chr8:144994916-144995197(-)$1	281	166	204	12.8663
""ggggggg"""eeeeeooooooeeeeeggggggg]dd	chr11:62284966-62285215(-)$1	249	35	73	12.1500
fff[eeeee!!ddddnnnnndddd22eeeee]ffffff	chr11:62287329-62287587(-)$1	258	95	133	10.9773
ffff[dddd[a[cccnnnnnccc]a]dddd333fffff	chr11:62299445-62299694(-)$1	249	109	147	11.6684
ccc[cccccc[ccccccooooooccc]ccc]ccc4444	chr3:9989393-9989691(+)$1	298	145	183	12.3860
[ccc[ccc!!ffffffmmmmffffff333ccc]ccccc	chr14:105196101-105196397(+)$1	296	161	199	11.6576
dddd[dddd####cccmmmmccc333dddd]dddd::d	chr11:62284836-62285134(-)$1	298	96	134	12.0669
[bb[eeeee[a[cccnnnnnccc]a]eeeee]bb333e	chr11:62293003-62293252(-)$1	249	102	140	11.5812
eeee[ccc[bb[ddddoooooodddd]bb]ccceeeee	chr17:46675180-46675441(-)$1	261	128	166	11.1080
gggggg[dddd!!cccnnnnnccc22dddd333ggggg	chr7:1886855-1887140(-)$1	285	40	78	13.1595
!iiiiiiiii"""cccmmmmccc666666iiiiiiiii	chr8:144999339-144999603(-)$1	264	59	97	14.2852
eee"""dddd####bbmmmmbb4444dddd333eeeee	chr3:33134582-33134829(-)$1	247	95	133	12.8540
======[cccgggggggooooooggggggg22ccc]==	chr19:58991274-58991529(-)$1	255	208	246	11.7464
"""ggggggg!!acccmmmmccc4444a22ggggggg]	chr11:62298345-62298569(-)$1	224	97	135	16.0037
ddd"""ccc"""ddddmmmmdddd22ccc22dddd22=	chr16:87735790-87736040(-)$1	250	36	74	15.3481
=eeeee!!ccc!!cccnnnnnccc333ccc22eeeee]	chr8:144941591-144941886(-)$1	295	84	122	13.0432
ddccc[cccccc[ccclllccc]ccc]ccc]ccc4444	chr11:62296332-62296610(-)$1	278	201	239	12.5711
fffff[ccc"""ddddnnnnndddd]ccc22ffffff]	chr1:39876822-39877070(+)$1	248	62	100	13.0533
e####ccc####ddddmmmmddddccc22eeeee]ccc	chr16:31090674-31090923(+)$1	249	28	66	14.3683
!hhhhhhhh"""ddddllldddd333hhhhhhhh22ae	chr11:63885598-63885819(-)$1	221	159	197	12.6249
===========[ddddmmmmdddd==============	chr16:31091932-31092231(+)$1	299	122	160	16.1704
cc!!ccc$$$$$a!!ammmma22a4444ccc22cccff	chr1:16254833-16255070(+)$1	237	48	86	13.2042
!iiiiiiiii"""cccmmmmccc666666iiiiiiiii	chr8:144999420-144999672(-)$1	252	128	166	14.2852
iiiggggggg####bboooooobb333ggggggg]iii	chr22:21799521-21799780(+)$1	259	161	199	14.1250
ccc[ffffff####bbmmmmbb333ffffff333ccc]	chr19:50354172-50354438(-)$1	266	193	231	12.1509
g!!ffffffbb[ddddmmmmdddd]bb22ffffffggg	chr19:50354091-50354338(-)$1	247	10	48	11.4976
$ccc[ccccccbbcccmmmmccc]bb]ccc]ccc22cc	chr11:62296283-62296532(-)$1	249	112	150	12.5510
gggggg[ccc[ddddnnnnnddddcccgggggggeeee	chr6:7246667-7246947(+)$1	280	84	122	12.0159
dddbb[eeeee!!cccmmmmccc4444eeeee]bb22d	chr1:16255487-16255731(+)$1	244	150	188	12.0913

#otherMatches

#Seq PSSM
GCCAUGCCUGGUUUGCUGCUCUGUAAUCCAGCGGCUCC	chr7:1886810-1887035(-)$1	225	66	104	13.7701
GUCGAGCGUGCGCUGCGGGAGCGGGGAGCGCUUUGCGG	chr19:2270266-2270595(+)$1	329	42	80	12.6645
CGGCGCUGGUGGGGGGCGUGCUGCUCAUCGGCGCGGUG	chr11:637280-637537(+)$1	257	130	168	11.5979
AUUACAGCAGCUUGGGGAGGCCCAUCAGGCUGAGACUG	chr11:71726062-71726349(-)$1	287	110	148	13.6637
AAGGGCUGCCAGACUGAAGCCAGCUCUGAGCGGCCCUU	chr16:31091061-31091337(+)$1	276	154	192	13.8993
UCCCAGAGCAGGUGCCCAGUGGCCCAGGCUUUGGGGAG	chr1:27876158-27876430(-)$1	272	55	93	13.6785
GGGGAGCUAUUACAAUUCCUCGGAACGGGCCUUGGCUC	chr1:228582623-228582876(-)$1	253	212	250	11.8200
UGGCGCGGCUGACCCAGGAGCGGGGCCGUGCCCAGGCU	chr11:71725391-71725661(-)$1	270	129	167	11.3647
ACGGUGAUGGCAGCCCCAGUAGGGAAGACAGCAUGGUG	chr17:17068556-17068843(+)$1	287	181	219	13.2305
GUCUGGCGUGAGCUGGGGAUCUGGGAGGCGUACUGGAC	chr21:47663450-47663764(+)$1	314	119	157	17.3880
CUGAGGGCUAGCGAGCAGAAGCUCAAGAGUGCUGAGGC	chr17:17067597-17067865(+)$1	268	161	199	11.9330
GAUAGUUUGGAAAGAAUGGACUUUAAAAGCGAGCAGGA	chr22:50277366-50277658(+)$1	292	46	84	11.7858
AAGUGGACAUUGAUGUCCCAGAUGUUAAUGUUCAGGGU	chr11:62293165-62293422(-)$1	257	157	195	13.2656
CAAAGGCGAGGGCCCAGAAGUGGAUGUGAACUUGCCUA	chr11:62298247-62298515(-)$1	268	43	81	16.0037
UGAAUCGCCAGGUCCUGGAGAAGGAGGGGGAGAGCAAG	chr11:71724678-71724924(-)$1	246	85	123	13.2148
GAUGGUGCCCAGGGAAUGGUUUCCAAGGCAAUAGCAAA	chr3:9851513-9851805(+)$1	292	15	53	14.2167
GCCAGAGUUGCCUGGGCAGCCUGUGGCAACUGUGGCGC	chr21:34923258-34923516(+)$1	258	192	230	13.1669
ACGCAGGGCUUCCAGCGGACGCUGGAGGCCGAGCGGCA	chr8:144996917-144997168(-)$1	251	152	190	13.7355
GAUCGGCCGUGAGCcggcggcggggggcggccgggguc	chr1:2160051-2160335(+)$1	284	18	56	14.8783
AGGAGCUGGGCUUGGACCUGUCCAAGAAAAGCCCACCC	chr22:21799745-21800020(+)$1	275	166	204	11.1675
GAGCCGCCAGUAUGGCCGGGCUAUGGCGGCGAGCACUG	chr19:5719919-5720189(-)$1	270	24	62	12.2231
GGGCCAGGCACUGCCCUGCAGGGCCCGCCCCCCUGCCC	chr16:87735911-87736173(-)$1	262	169	207	15.3481
CCCCGCGGACCUGGCCCUCCUGGGCCUCUCGGCCGAAC	chr8:144671769-144672007(-)$1	238	46	84	11.7268
CAGGCCCGGGCCACAGCAGGUCUGGGUGCCACUGGGGC	chr4:1231779-1232026(-)$1	247	126	164	11.4117
UCAAAGGAGAAGGUCCAGAAGUGGAUGUGAACCUGCCC	chr11:62289982-62290225(-)$1	243	170	208	11.5183
CUGCAGGGUCUGCCUGGCGAAGCCCUGGGCUGCCCUGC	chr4:1729800-1730054(+)$1	254	121	159	13.9677
CAGCAUGCCUGGCUUCAAAGGAGAAGGCCCUGAAGUCG	chr11:62290903-62291142(-)$1	239	83	121	12.1966
GCUGGAGAGCAGGGUCAUCGACCGCGAGCUCUACCAGC	chr8:144994916-144995197(-)$1	281	166	204	12.8663
CGGAUGUUUCAGGGGGUGUCAGUGCCCCAGACAUCAGC	chr11:62284966-62285215(-)$1	249	35	73	12.1500
UGUGGAUGUGAGCCUGCCCAAGGCCGACAUCGAUGUCU	chr11:62287329-62287587(-)$1	258	95	133	10.9773
AGUGGAUGUGAACCUGCCCAAGGCUGAUGUGGACAUUU	chr11:62299445-62299694(-)$1	249	109	147	11.6684
AGCUGGCGGUGGGCUCCGGAGGGGGAGGCUGGCCCAGG	chr3:9989393-9989691(+)$1	298	145	183	12.3860
aggcaaggaggugGGCAGAGGCCCACGAACCUGGCCCU	chr14:105196101-105196397(+)$1	296	161	199	11.6576
UCAUUUCUCAGGACCAAAGGUGGAAGGAGGUGUGAAAG	chr11:62284836-62285134(-)$1	298	96	134	12.0669
AGUGGAUGUGAACCUGCCCAAGGCUGACGUUGAUGUCU	chr11:62293003-62293252(-)$1	249	102	140	11.5812
GCCGAGCGGCGCCCUGCGACUACGGGCCGGCGCCGGCC	chr17:46675180-46675441(-)$1	261	128	166	11.1080
GGACAGAGGACAGCUAAAGGGUAGAGGUCUCCACUGUC	chr7:1886855-1887140(-)$1	285	40	78	13.1595
CCUCGCGCGUGAAGGCCGAGGCCGAGGCGGCGCGCGAG	chr8:144999339-144999603(-)$1	264	59	97	14.2852
CAGUGGCAGUGGGAGUGAGGAUGAGGACUGGAUCUGCU	chr3:33134582-33134829(-)$1	247	95	133	12.8540
GCCUCUGGCUGGUGGGGCGGUAACCCUGCCCGGGUGGG	chr19:58991274-58991529(-)$1	255	208	246	11.7464
CAAAGGCGAGGGCCCAGAAGUGGAUGUGAACUUGCCUA	chr11:62298345-62298569(-)$1	224	97	135	16.0037
GGGCCAGGCACUGCCCUGCAGGGCCCGCCCCCCUGCCC	chr16:87735790-87736040(-)$1	250	36	74	15.3481
CGUGUGGGGAGGACUGGGGGACAGGCACUCAGCACGCU	chr8:144941591-144941886(-)$1	295	84	122	13.0432
CCGAUGUUGAUCUGGAGUGUCCUGAUGCAAAGUUGAAA	chr11:62296332-62296610(-)$1	278	201	239	12.5711
GUCUGAGCUAAAGUUUGAGGAGGAUGAGCGAUGGAUUA	chr1:39876822-39877070(+)$1	248	62	100	13.0533
GGAGAUGCCAAGUCUCAAGAGGGAGCAGGCACCCCCUU	chr16:31090674-31090923(+)$1	249	28	66	14.3683
AGGGGAAGAUAGUGUGGACCACGUACUCUUCUUUGGCG	chr11:63885598-63885819(-)$1	221	159	197	12.6249
ACUGGGGAAUCAUAGUGGAGGCUGGGUUCCUCAGUUCC	chr16:31091932-31092231(+)$1	299	122	160	16.1704
ACCAUGAGAGGAGGCCGAUUGAACGAAGUCAAAGUCCU	chr1:16254833-16255070(+)$1	237	48	86	13.2042
CCUCGCGCGUGAAGGCCGAGGCCGAGGCGGCGCGCGAG	chr8:144999420-144999672(-)$1	252	128	166	14.2852
ACGGCCUCUGUCAUCCAAGCUCGGUAUCAGGGGCUCGU	chr22:21799521-21799780(+)$1	259	161	199	14.1250
UUCAGGGGGCGUGGCGGGAACGGGAGCCCCUACCGAAU	chr19:50354172-50354438(-)$1	266	193	231	12.1509
cgggcgggAGCGGAGUGUGGGCUCGGCGGUCCUGCGGG	chr19:50354091-50354338(-)$1	247	10	48	11.4976
AGCGGAGGUGCCCGAUGUUGAUCUGGAGUGUCCUGAUG	chr11:62296283-62296532(-)$1	249	112	150	12.5510
CUCCGCCAGGUCGCAGGGGAUGCGCCUGUGGAGCAGGC	chr6:7246667-7246947(+)$1	280	84	122	12.0159
AGCCUGCAGAUGGGGUAAGUGCUGUGGAUCUGGAGAAG	chr1:16255487-16255731(+)$1	244	150	188	12.0913

#DB
((...((((((.((((......)))).)))..)))...	chr7:1886810-1887035(-)$1	1	66	104	13.7701
((.((((((.(.((((....)))).).)))))).))))	chr19:2270266-2270595(+)$1	1	42	80	12.6645
).(((((((((((.((....)).))))))))))).(((	chr11:637280-637537(+)$1	1	130	168	11.5979
.((.((((....((((....))))....)))).)).))	chr11:71726062-71726349(-)$1	1	110	148	13.6637
((((((((((((((((....))).)))).)))))))))	chr16:31091061-31091337(+)$1	1	154	192	13.8993
(((((((((.((.(((....)))))..)))))))))..	chr1:27876158-27876430(-)$1	1	55	93	13.6785
).(((((((...(..(((....)))..)....))))))	chr1:228582623-228582876(-)$1	1	212	250	11.8200
(((((((((...(((......)))))))))))...)))	chr11:71725391-71725661(-)$1	1	129	167	11.3647
((.(((.((....(((.....)))....)).))).)))	chr17:17068556-17068843(+)$1	1	181	219	13.2305
(((((((((...((((....))))...)))..))))))	chr21:47663450-47663764(+)$1	1	119	157	17.3880
(((((.(((...((((....))))...))).)).((((	chr17:17067597-17067865(+)$1	1	161	199	11.9330
(...((((..((((......))))..))))...)))))	chr22:50277366-50277658(+)$1	1	46	84	11.7858
...((((((((((((((...))))))))))))))))))	chr11:62293165-62293422(-)$1	1	157	195	13.2656
...(((((((..((((....)))....)..))))))).	chr11:62298247-62298515(-)$1	1	43	81	16.0037
(...((.((...((((.....))))...)).))...))	chr11:71724678-71724924(-)$1	1	85	123	13.2148
(....((((...((((....))))..))))....)).)	chr3:9851513-9851805(+)$1	1	15	53	14.2167
((((.(((((((((((...)))).))))))).))))))	chr21:34923258-34923516(+)$1	1	192	230	13.1669
.(((..((((((((((....))))))))))..)))...	chr8:144996917-144997168(-)$1	1	152	190	13.7355
((((((((((...(((....)))...)))))))..)))	chr1:2160051-2160335(+)$1	1	18	56	14.8783
.((.(((...((((((....))))))...)))))...)	chr22:21799745-21800020(+)$1	1	166	204	11.1675
..(((((((...((((...)))))))))))..))))..	chr19:5719919-5720189(-)$1	1	24	62	12.2231
(((...(((...((((....))))..)))..))))..)	chr16:87735911-87736173(-)$1	1	169	207	15.3481
((....(((...(((((....)))))))).)))))).)	chr8:144671769-144672007(-)$1	1	46	84	11.7268
(..(((((((((......))))))))))))((((((((	chr4:1231779-1232026(-)$1	1	126	164	11.4117
....(((...(.(((((....))))).)...)))))).	chr11:62289982-62290225(-)$1	1	170	208	11.5183
(((((((((..(((((((...)))..)))).)))))))	chr4:1729800-1730054(+)$1	1	121	159	13.9677
(((...((((..((((...)))).)))).)))))((((	chr11:62290903-62291142(-)$1	1	83	121	12.1966
((((((((((.(((((...)))).)..))))).)))))	chr8:144994916-144995197(-)$1	1	166	204	12.8663
..(((((((...(((((......)))))))))))).))	chr11:62284966-62285215(-)$1	1	35	73	12.1500
(((.(((((..((((.....))))..))))).))))))	chr11:62287329-62287587(-)$1	1	95	133	10.9773
((((.((((.(.(((.....))).).))))...)))))	chr11:62299445-62299694(-)$1	1	109	147	11.6684
(((.((((((.((((((......))).))).)))....	chr3:9989393-9989691(+)$1	1	145	183	12.3860
.(((.(((..((((((....))))))...))).)))))	chr14:105196101-105196397(+)$1	1	161	199	11.6576
((((.((((....(((....)))...)))).))))..(	chr11:62284836-62285134(-)$1	1	96	134	12.0669
.((.(((((.(.(((.....))).).))))).))...)	chr11:62293003-62293252(-)$1	1	102	140	11.5812
((((.(((.((.((((......)))).)).))))))))	chr17:46675180-46675441(-)$1	1	128	166	11.1080
((((((.((((..(((.....)))..))))...)))))	chr7:1886855-1887140(-)$1	1	40	78	13.1595
.(((((((((...(((....)))......)))))))))	chr8:144999339-144999603(-)$1	1	59	97	14.2852
(((...((((....((....))....))))...)))))	chr3:33134582-33134829(-)$1	1	95	133	12.8540
((((((.((((((((((......)))))))..))).))	chr19:58991274-58991529(-)$1	1	208	246	11.7464
...(((((((..((((....)))....)..))))))).	chr11:62298345-62298569(-)$1	1	97	135	16.0037
(((...(((...((((....))))..)))..))))..)	chr16:87735790-87736040(-)$1	1	36	74	15.3481
((((((..(((..(((.....)))...)))..))))).	chr8:144941591-144941886(-)$1	1	84	122	13.0432
(((((.((((((.(((...))).))).))).)))....	chr11:62296332-62296610(-)$1	1	201	239	12.5711
(((((.(((...((((.....)))).)))..)))))).	chr1:39876822-39877070(+)$1	1	62	100	13.0533
(....(((....((((....)))))))..))))).)))	chr16:31090674-31090923(+)$1	1	28	66	14.3683
.((((((((...((((...))))...))))))))..))	chr11:63885598-63885819(-)$1	1	159	197	12.6249
(((((((((((.((((....))))))))))))))))))	chr16:31091932-31092231(+)$1	1	122	160	16.1704
((..(((.....(..(....)..)....)))..)))))	chr1:16254833-16255070(+)$1	1	48	86	13.2042
.(((((((((...(((....)))......)))))))))	chr8:144999420-144999672(-)$1	1	128	166	14.2852
((((((((((....((......))...))))))).)))	chr22:21799521-21799780(+)$1	1	161	199	14.1250
(((.((((((....((....))...))))))...))).	chr19:50354172-50354438(-)$1	1	193	231	12.1509
(..((((((((.((((....)))).))..)))))))))	chr19:50354091-50354338(-)$1	1	10	48	11.4976
.(((.(((((((((((....))).)).))).)))..))	chr11:62296283-62296532(-)$1	1	112	150	12.5510
((((((.(((.((((.....))))))))))))))((((	chr6:7246667-7246947(+)$1	1	84	122	12.0159
(((((.(((((..(((....)))....))))).))..)	chr1:16255487-16255731(+)$1	1	150	188	12.0913

#PSSM
d : 0.17	e : 0.08	= : 0.08	c : 0.08	g : 0.08	! : 0.08	f : 0.07	[ : 0.05	i : 0.05	$ : 0.05	" : 0.05	h : 0.03	D : 0.01	b : 0.01	& : 0.01	
d : 0.14	c : 0.10	e : 0.08	i : 0.08	" : 0.08	= : 0.07	g : 0.07	f : 0.07	b : 0.05	! : 0.05	: : 0.03	h : 0.03	$ : 0.03	# : 0.03	D : 0.01	
g : 0.12	c : 0.10	" : 0.08	= : 0.08	i : 0.08	d : 0.08	e : 0.07	b : 0.05	# : 0.05	! : 0.05	f : 0.05	[ : 0.03	h : 0.03	$ : 0.03	D : 0.01	
g : 0.19	" : 0.12	= : 0.10	[ : 0.10	i : 0.08	c : 0.08	f : 0.07	# : 0.05	h : 0.03	b : 0.03	e : 0.03	$ : 0.01	d : 0.01	! : 0.01	
g : 0.17	= : 0.10	c : 0.10	[ : 0.10	" : 0.08	i : 0.08	f : 0.07	b : 0.05	# : 0.05	e : 0.05	d : 0.03	h : 0.03	! : 0.01	
g : 0.19	c : 0.17	= : 0.10	d : 0.08	i : 0.07	[ : 0.07	" : 0.07	e : 0.07	f : 0.05	h : 0.03	b : 0.01	! : 0.01	# : 0.01	
c : 0.28	g : 0.14	d : 0.12	= : 0.10	[ : 0.08	i : 0.07	e : 0.07	f : 0.05	h : 0.03	! : 0.01	
c : 0.26	d : 0.14	g : 0.14	= : 0.10	i : 0.07	e : 0.07	f : 0.05	h : 0.03	b : 0.03	" : 0.03	! : 0.01	$ : 0.01	
c : 0.23	g : 0.14	= : 0.10	d : 0.10	i : 0.07	e : 0.07	f : 0.05	# : 0.03	h : 0.03	b : 0.03	! : 0.03	" : 0.03	[ : 0.01	$ : 0.01	
" : 0.26	c : 0.12	g : 0.08	[ : 0.07	= : 0.07	# : 0.07	d : 0.07	! : 0.07	i : 0.05	e : 0.03	b : 0.03	$ : 0.01	f : 0.01	
" : 0.28	# : 0.12	! : 0.08	c : 0.07	a : 0.07	= : 0.07	d : 0.05	b : 0.05	[ : 0.05	g : 0.03	f : 0.03	i : 0.01	$ : 0.01	e : 0.01	
" : 0.28	[ : 0.14	# : 0.12	! : 0.10	d : 0.08	= : 0.05	b : 0.03	g : 0.03	f : 0.03	c : 0.03	i : 0.01	a : 0.01	$ : 0.01	
d : 0.42	# : 0.08	a : 0.07	c : 0.07	= : 0.05	" : 0.05	e : 0.05	! : 0.05	[ : 0.03	f : 0.03	o : 0.01	g : 0.01	b : 0.01	
d : 0.41	c : 0.32	e : 0.05	# : 0.05	! : 0.03	= : 0.03	f : 0.03	[ : 0.01	o : 0.01	g : 0.01	
d : 0.39	c : 0.32	b : 0.07	e : 0.05	! : 0.03	o : 0.03	= : 0.03	f : 0.03	g : 0.01	
d : 0.33	c : 0.30	b : 0.07	n : 0.07	o : 0.05	e : 0.05	= : 0.03	f : 0.03	g : 0.01	a : 0.01	
m : 0.48	n : 0.16	o : 0.10	l : 0.10	c : 0.05	e : 0.05	= : 0.01	g : 0.01	
m : 0.51	o : 0.16	n : 0.16	l : 0.12	c : 0.03	
m : 0.53	n : 0.16	o : 0.14	l : 0.14	i : 0.01	
m : 0.53	n : 0.16	o : 0.14	d : 0.08	l : 0.03	i : 0.01	c : 0.01	
d : 0.32	c : 0.23	o : 0.12	n : 0.08	b : 0.05	m : 0.05	= : 0.03	f : 0.03	i : 0.01	l : 0.01	a : 0.01	
d : 0.35	c : 0.32	o : 0.10	b : 0.05	= : 0.03	f : 0.03	e : 0.03	m : 0.01	i : 0.01	2 : 0.01	
d : 0.39	c : 0.32	o : 0.05	] : 0.03	= : 0.03	f : 0.03	e : 0.03	i : 0.01	4 : 0.01	2 : 0.01	b : 0.01	3 : 0.01	
d : 0.30	c : 0.14	] : 0.12	4 : 0.07	3 : 0.07	= : 0.05	e : 0.05	b : 0.03	f : 0.03	g : 0.03	6 : 0.03	i : 0.01	a : 0.01	
3 : 0.14	4 : 0.12	2 : 0.12	d : 0.10	c : 0.08	= : 0.07	g : 0.05	e : 0.05	a : 0.05	] : 0.03	b : 0.03	f : 0.03	6 : 0.03	h : 0.01	i : 0.01	
2 : 0.17	3 : 0.14	4 : 0.12	d : 0.07	= : 0.07	c : 0.07	g : 0.05	f : 0.05	e : 0.05	] : 0.05	6 : 0.03	b : 0.03	a : 0.01	h : 0.01	i : 0.01	
d : 0.16	] : 0.12	3 : 0.12	4 : 0.10	c : 0.10	= : 0.07	g : 0.07	2 : 0.05	e : 0.05	h : 0.03	6 : 0.03	i : 0.01	f : 0.01	b : 0.01	
c : 0.21	d : 0.16	g : 0.10	e : 0.08	= : 0.07	a : 0.07	4 : 0.05	3 : 0.05	f : 0.03	h : 0.03	6 : 0.03	2 : 0.03	i : 0.01	b : 0.01	
c : 0.23	d : 0.14	g : 0.12	= : 0.07	2 : 0.07	e : 0.07	b : 0.05	3 : 0.05	f : 0.03	] : 0.03	h : 0.03	6 : 0.03	i : 0.01	4 : 0.01	
c : 0.19	d : 0.14	g : 0.12	e : 0.10	= : 0.08	2 : 0.08	f : 0.05	i : 0.05	h : 0.03	b : 0.03	] : 0.03	4 : 0.01	3 : 0.01	
2 : 0.16	] : 0.14	g : 0.12	e : 0.10	= : 0.08	3 : 0.08	f : 0.07	c : 0.07	i : 0.05	4 : 0.03	h : 0.03	d : 0.01	
c : 0.14	2 : 0.12	= : 0.10	g : 0.10	3 : 0.08	f : 0.07	d : 0.07	e : 0.07	i : 0.05	] : 0.05	4 : 0.03	h : 0.03	b : 0.03	
c : 0.16	g : 0.16	= : 0.10	3 : 0.10	f : 0.08	] : 0.07	b : 0.07	d : 0.07	i : 0.05	e : 0.05	4 : 0.01	h : 0.01	2 : 0.01	
c : 0.17	g : 0.16	= : 0.10	f : 0.08	e : 0.08	b : 0.07	i : 0.07	d : 0.07	3 : 0.05	h : 0.03	] : 0.01	: : 0.01	4 : 0.01	2 : 0.01	
g : 0.14	c : 0.12	e : 0.10	= : 0.08	f : 0.08	i : 0.07	3 : 0.07	d : 0.07	b : 0.05	] : 0.05	2 : 0.05	4 : 0.03	: : 0.01	h : 0.01	
g : 0.16	e : 0.10	c : 0.10	= : 0.08	i : 0.08	2 : 0.08	4 : 0.07	f : 0.07	] : 0.05	d : 0.05	3 : 0.05	h : 0.01	b : 0.01	: : 0.01	
g : 0.16	e : 0.10	= : 0.10	c : 0.10	4 : 0.07	2 : 0.07	d : 0.07	i : 0.07	f : 0.07	] : 0.03	3 : 0.03	: : 0.03	b : 0.01	h : 0.01	a : 0.01	
e : 0.14	= : 0.14	g : 0.12	d : 0.10	] : 0.08	4 : 0.07	c : 0.07	i : 0.07	f : 0.05	b : 0.03	2 : 0.03	h : 0.01	: : 0.01	a : 0.01	

#score	728.4510433441052
#seq	56
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_transcript_m3_run2.txt

#BEAR
cc!!ddddnnnnndddd]ccc	chr19:3053642-3053907(-)$1	265	68	89	12.7186
fff[ddddnnnnndddd]fff	chr20:26189852-26190092(-)$1	240	125	146	11.7437
eeeee[bbnnnnnbb]eeeee	chr2:187368764-187369056(+)$1	292	102	123	10.3476
ggggg[bbnnnnnbbgggggg	chr1:8934783-8935001(-)$1	218	94	115	10.3800
[gggggggnnnnngggggggb	chr3:142838710-142838970(+)$1	260	122	143	10.8337
eeeee[bbnnnnnbb]eeeee	chr1:214817915-214818139(+)$1	224	48	69	10.3476
d!!eeeeennnnneeeee22d	chr6:27809333-27809577(+)$1	244	65	86	12.5499
b####cccnnnnnccc4444b	chr16:2814653-2814894(+)$1	241	157	178	11.5384
!!a[ddddnnnnndddda22d	chr12:98993395-98993662(+)$1	267	69	90	12.8646
iiiiiiiinnnnniiiiiiii	chr11:122929941-122930216(-)$1	275	251	272	11.0246
bgggggggnnnnnggggggg]	chr3:186502484-186502733(+)$1	249	121	142	10.7556
a"""ddddnnnnndddd22a2	chr5:180668725-180668977(-)$1	252	115	136	12.7150
========nnnnn========	chr12:76449748-76449964(-)$1	216	182	203	11.6281
bb!!ddddnnnnndddd22bb	chr11:5482917-5483220(-)$1	303	141	162	11.8283
ccc[ddddnnnnndddd]ccc	chr1:45244215-45244460(+)$1	245	26	47	12.4237
[ccc[cccnnnnncccccc22	chr17:8076671-8076902(-)$1	231	158	179	10.8326
####ddddnnnnndddd22ff	chr8:97243080-97243373(-)$1	293	31	52	12.4749
)))eeeeennnnneeeee>>>	chr11:17096097-17096342(-)$1	245	80	101	10.8290
$$$eeeeennnnneeeee000	chr7:120897060-120897315(+)$1	255	168	189	11.2694
ccc[ddddnnnnndddd333c	chr1:16257305-16257553(+)$1	248	72	93	13.1749
dddd[cccnnnnnccc]dddd	chr15:66793498-66793748(-)$1	250	65	86	10.0660
###eeeeennnnneeeee555	chr1:173835968-173836179(-)$1	211	127	148	11.0441
dd[eeeeennnnneeeee]dd	chr5:135416119-135416335(-)$1	216	56	77	12.0162
c[ffffffnnnnnffffff]c	chr5:179147314-179147562(+)$1	248	153	174	10.0108
egggggggnnnnnggggggg:	chr2:85772082-85772330(+)$1	248	225	246	10.1052
ccc[ddddnnnnndddd]ccc	chr10:71148873-71149149(+)$1	276	32	53	12.4237
f[bbddddnnnnndddd]bb3	chr17:2233476-2233745(-)$1	269	237	258	11.1813
:bb[ddddnnnnndddd]bb:	chr16:88527497-88527771(+)$1	274	91	112	9.7601
hh[eeeeennnnneeeee22h	chr2:207026852-207027184(+)$1	332	212	233	11.8121
###eeeeennnnneeeee555	chrX:135961255-135961484(-)$1	229	64	85	11.0441
eee"""bbnnnnnbb333eee	chr10:79800301-79800545(+)$1	244	142	163	9.9428
fff[ddddnnnnnddddffff	chr11:93466298-93466574(-)$1	276	108	129	11.4830
dd!!ddddnnnnndddddddd	chr3:37367401-37367694(+)$1	293	87	108	11.9829
!!ffffffnnnnnffffff44	chrX:73071591-73071873(-)$1	282	153	174	10.4939
[dddd[aannnnna]a]dddd	chr11:62622662-62622937(-)$1	275	13	34	10.0472
dd!!ddddnnnnndddddddd	chr19:47104519-47104794(+)$1	275	223	244	11.9829
ee!!ddddnnnnndddd4444	chr6:133138306-133138559(+)$1	253	186	207	13.2167
cc[eeeeennnnneeeee333	chr4:53578767-53579013(+)$1	246	191	212	13.0345
cc[eeeeennnnneeeee22c	chr17:16344433-16344726(+)$1	293	126	147	12.4727
eeeee[bbnnnnnbb]eeeee	chr11:17097255-17097481(-)$1	226	150	171	10.3476
ggggggbbnnnnnbb]ggggg	chr15:44085158-44085450(+)$1	292	100	121	10.3275
eee"""bbnnnnnbb333eee	chr2:152322048-152322310(+)$1	262	203	224	9.9428
dd[eeeeennnnneeeee]dd	chr5:135416088-135416319(-)$1	231	40	61	12.0162
ccc[ddddnnnnndddd]ccc	chr1:173833900-173834141(-)$1	241	194	215	12.4237
!!a[ddddnnnnndddda22d	chr19:50000891-50001151(+)$1	260	70	91	12.8646
eee[ddddoooooodddd]ee	chr20:2637493-2637753(+)$1	260	64	85	7.4622
###eeeeennnnneeeee555	chr1:173835920-173836168(-)$1	248	116	137	11.0441
iiiiiiiinnnnniiiiiiii	chr11:75111333-75111659(+)$1	326	165	186	11.0246
a!!eeeeeooooooeeeee22	chr17:20787732-20787987(+)$1	255	136	157	7.9143
dddd[cccnnnnnccc4444d	chr9:37126768-37127058(+)$1	290	57	78	11.0391
bb[eeeeennnnneeeee]bb	chr5:138700234-138700485(+)$1	251	228	249	11.4696
a[ffffffnnnnnffffff]a	chr11:93454771-93454998(+)$1	227	47	68	10.0467
"""ddddoooooodddd4444	chr2:203142756-203142992(+)$1	236	120	141	8.6400

#otherMatches

#Seq PSSM
AUGAUGGCGAGAAGUCGGAUU	chr19:3053642-3053907(-)$1	265	68	89	12.7186
CCCCUCCCACGCGGGGAAGGG	chr20:26189852-26190092(-)$1	240	125	146	11.7437
UUUGUGUUGAAAAAAGAUAAA	chr2:187368764-187369056(+)$1	292	102	123	10.3476
GAGGUUGAUCUCUUCACCUCA	chr1:8934783-8935001(-)$1	218	94	115	10.3800
UCCUUUGGUCCAGUCGGAGGC	chr3:142838710-142838970(+)$1	260	122	143	10.8337
GAACACCAAAGCAUGAUGUUC	chr1:214817915-214818139(+)$1	224	48	69	10.3476
CAAGAUUUGGCUAAAAUUAAG	chr6:27809333-27809577(+)$1	244	65	86	12.5499
AAAGAUGGUUUACCCAGAACU	chr16:2814653-2814894(+)$1	241	157	178	11.5384
UUGUAAACUUCUUGUUUCUUG	chr12:98993395-98993662(+)$1	267	69	90	12.8646
CCAGGCAGCCAUCUUGUCUGG	chr11:122929941-122930216(-)$1	275	251	272	11.0246
CUUUCGGGACUGACCUGAAAU	chr3:186502484-186502733(+)$1	249	121	142	10.7556
CCAAUCCCCAAGUGGGAGUGA	chr5:180668725-180668977(-)$1	252	115	136	12.7150
UUUGAAGGGUAAACCUUUGAA	chr12:76449748-76449964(-)$1	216	182	203	11.6281
gaaagccuguaugggguaguc	chr11:5482917-5483220(-)$1	303	141	162	11.8283
UUGCAGCGUGCAUCGCUUCAA	chr1:45244215-45244460(+)$1	245	26	47	12.4237
UUAUGCUGAUUAGCAGAUAUC	chr17:8076671-8076902(-)$1	231	158	179	10.8326
CCGUAUCUGAAAGAGGUUAUU	chr8:97243080-97243373(-)$1	293	31	52	12.4749
gcaguuuccaccagaaauguu	chr11:17096097-17096342(-)$1	245	80	101	10.8290
ucaugcagcaaaccugcacac	chr7:120897060-120897315(+)$1	255	168	189	11.2694
GAAAAGAGGAAGAUUCUGACU	chr1:16257305-16257553(+)$1	248	72	93	13.1749
GGUAUACUCUGCAAGUCUACU	chr15:66793498-66793748(-)$1	250	65	86	10.0660
GGACAGAAGGGAUUUCUGAAA	chr1:173835968-173836179(-)$1	211	127	148	11.0441
AGUUAGCUCAAGCGGUUACCU	chr5:135416119-135416335(-)$1	216	56	77	12.0162
UCCUGGAUGUGGUGUCUGGCA	chr5:179147314-179147562(+)$1	248	153	174	10.0108
UUUCAGGAUCUAUUUUUGGAG	chr2:85772082-85772330(+)$1	248	225	246	10.1052
AGGCAUAGUGAUCCUAUUCCU	chr10:71148873-71149149(+)$1	276	32	53	12.4237
gcgcggcggcucacgccugua	chr17:2233476-2233745(-)$1	269	237	258	11.1813
GGCGGGGCGGGAGGCCUGGUG	chr16:88527497-88527771(+)$1	274	91	112	9.7601
AUAUGUGUGACAGACACAAGA	chr2:207026852-207027184(+)$1	332	212	233	11.8121
AUUUGAUUGCAUUGAUCGUCU	chrX:135961255-135961484(-)$1	229	64	85	11.0441
CUAAAAACUUCAUGUGUCUGG	chr10:79800301-79800545(+)$1	244	142	163	9.9428
GUUCAGAUGAUGAAUUUAACU	chr11:93466298-93466574(-)$1	276	108	129	11.4830
GUCUUAGUAAACAACUAACUG	chr3:37367401-37367694(+)$1	293	87	108	11.9829
UGGCAGAGAAUGACUCUGCAG	chrX:73071591-73071873(-)$1	282	153	174	10.4939
UUGGAACCGAAGAGAGCUCUG	chr11:62622662-62622937(-)$1	275	13	34	10.0472
UAACGGGGCAGGACCCCUGAG	chr19:47104519-47104794(+)$1	275	223	244	11.9829
UAGUGAUGGGAAACAUUUUUA	chr6:133138306-133138559(+)$1	253	186	207	13.2167
CACCGUAACAAUUUUGCGCUU	chr4:53578767-53579013(+)$1	246	191	212	13.0345
AUAGCUGGAAUUACCGGCAGA	chr17:16344433-16344726(+)$1	293	126	147	12.4727
gagugaGCUUUAUGUGCAUUC	chr11:17097255-17097481(-)$1	226	150	171	10.3476
UCUGCUGCCGCCCGCAAGCAG	chr15:44085158-44085450(+)$1	292	100	121	10.3275
UGAGCACUGAAGAAGGAAUCA	chr2:152322048-152322310(+)$1	262	203	224	9.9428
AGUUAGCUCAAGCGGUUACCU	chr5:135416088-135416319(-)$1	231	40	61	12.0162
UAUGCCCCGAAAAGGGGAAUA	chr1:173833900-173834141(-)$1	241	194	215	12.4237
AGGUCCAGGUACAUUGGCAGA	chr19:50000891-50001151(+)$1	260	70	91	12.8646
UGGGUGUGGAGUGGCAUAGCU	chr20:2637493-2637753(+)$1	260	64	85	7.4622
GGACAGAAGGGAUUUCUGAAA	chr1:173835920-173836168(-)$1	248	116	137	11.0441
UGUGCUGCGUUCUGUGGCACA	chr11:75111333-75111659(+)$1	326	165	186	11.0246
GAGCAUCUAGUUACAGAUGAG	chr17:20787732-20787987(+)$1	255	136	157	7.9143
CCAUUUCAGAAGGUGAUAAUG	chr9:37126768-37127058(+)$1	290	57	78	11.0391
CUAGUGCAUCUUUUGCAUAAG	chr5:138700234-138700485(+)$1	251	228	249	11.4696
GGGCAUAUGUCUGgugugugu	chr11:93454771-93454998(+)$1	227	47	68	10.0467
AUCUGACUCAUUCGUCACUAC	chr2:203142756-203142992(+)$1	236	120	141	8.6400

#DB
((..((((.....)))).)))	chr19:3053642-3053907(-)$1	1	68	89	12.7186
(((.((((.....)))).)))	chr20:26189852-26190092(-)$1	1	125	146	11.7437
(((((.((.....)).)))))	chr2:187368764-187369056(+)$1	1	102	123	10.3476
(((((.((.....))))))))	chr1:8934783-8935001(-)$1	1	94	115	10.3800
.(((((((.....))))))))	chr3:142838710-142838970(+)$1	1	122	143	10.8337
(((((.((.....)).)))))	chr1:214817915-214818139(+)$1	1	48	69	10.3476
(..(((((.....)))))..)	chr6:27809333-27809577(+)$1	1	65	86	12.5499
(....(((.....)))....)	chr16:2814653-2814894(+)$1	1	157	178	11.5384
..(.((((.....)))))..)	chr12:98993395-98993662(+)$1	1	69	90	12.8646
((((((((.....))))))))	chr11:122929941-122930216(-)$1	1	251	272	11.0246
((((((((.....))))))).	chr3:186502484-186502733(+)$1	1	121	142	10.7556
(...((((.....))))..).	chr5:180668725-180668977(-)$1	1	115	136	12.7150
((((((((.....))))))))	chr12:76449748-76449964(-)$1	1	182	203	11.6281
((..((((.....))))..))	chr11:5482917-5483220(-)$1	1	141	162	11.8283
(((.((((.....)))).)))	chr1:45244215-45244460(+)$1	1	26	47	12.4237
.(((.(((.....))))))..	chr17:8076671-8076902(-)$1	1	158	179	10.8326
....((((.....))))..))	chr8:97243080-97243373(-)$1	1	31	52	12.4749
...(((((.....)))))...	chr11:17096097-17096342(-)$1	1	80	101	10.8290
...(((((.....)))))...	chr7:120897060-120897315(+)$1	1	168	189	11.2694
(((.((((.....))))...)	chr1:16257305-16257553(+)$1	1	72	93	13.1749
((((.(((.....))).))))	chr15:66793498-66793748(-)$1	1	65	86	10.0660
...(((((.....)))))...	chr1:173835968-173836179(-)$1	1	127	148	11.0441
((.(((((.....))))).))	chr5:135416119-135416335(-)$1	1	56	77	12.0162
(.((((((.....)))))).)	chr5:179147314-179147562(+)$1	1	153	174	10.0108
)(((((((.....))))))).	chr2:85772082-85772330(+)$1	1	225	246	10.1052
(((.((((.....)))).)))	chr10:71148873-71149149(+)$1	1	32	53	12.4237
(.((((((.....)))).)).	chr17:2233476-2233745(-)$1	1	237	258	11.1813
.((.((((.....)))).)).	chr16:88527497-88527771(+)$1	1	91	112	9.7601
((.(((((.....)))))..)	chr2:207026852-207027184(+)$1	1	212	233	11.8121
...(((((.....)))))...	chrX:135961255-135961484(-)$1	1	64	85	11.0441
(((...((.....))...)))	chr10:79800301-79800545(+)$1	1	142	163	9.9428
(((.((((.....))))))))	chr11:93466298-93466574(-)$1	1	108	129	11.4830
((..((((.....))))))))	chr3:37367401-37367694(+)$1	1	87	108	11.9829
..((((((.....))))))..	chrX:73071591-73071873(-)$1	1	153	174	10.4939
.((((.((.....).).))))	chr11:62622662-62622937(-)$1	1	13	34	10.0472
((..((((.....))))))))	chr19:47104519-47104794(+)$1	1	223	244	11.9829
((..((((.....))))....	chr6:133138306-133138559(+)$1	1	186	207	13.2167
((.(((((.....)))))...	chr4:53578767-53579013(+)$1	1	191	212	13.0345
((.(((((.....)))))..)	chr17:16344433-16344726(+)$1	1	126	147	12.4727
(((((.((.....)).)))))	chr11:17097255-17097481(-)$1	1	150	171	10.3476
((((((((.....)).)))))	chr15:44085158-44085450(+)$1	1	100	121	10.3275
(((...((.....))...)))	chr2:152322048-152322310(+)$1	1	203	224	9.9428
((.(((((.....))))).))	chr5:135416088-135416319(-)$1	1	40	61	12.0162
(((.((((.....)))).)))	chr1:173833900-173834141(-)$1	1	194	215	12.4237
..(.((((.....)))))..)	chr19:50000891-50001151(+)$1	1	70	91	12.8646
(((.((((......)))).))	chr20:2637493-2637753(+)$1	1	64	85	7.4622
...(((((.....)))))...	chr1:173835920-173836168(-)$1	1	116	137	11.0441
((((((((.....))))))))	chr11:75111333-75111659(+)$1	1	165	186	11.0246
(..(((((......)))))..	chr17:20787732-20787987(+)$1	1	136	157	7.9143
((((.(((.....)))....)	chr9:37126768-37127058(+)$1	1	57	78	11.0391
((.(((((.....))))).))	chr5:138700234-138700485(+)$1	1	228	249	11.4696
(.((((((.....)))))).)	chr11:93454771-93454998(+)$1	1	47	68	10.0467
...((((......))))....	chr2:203142756-203142992(+)$1	1	120	141	8.6400

#PSSM
c : 0.15	e : 0.15	d : 0.13	b : 0.07	# : 0.07	f : 0.05	[ : 0.05	! : 0.05	a : 0.05	g : 0.03	i : 0.03	= : 0.01	) : 0.01	$ : 0.01	: : 0.01	h : 0.01	" : 0.01	
c : 0.15	e : 0.13	d : 0.13	g : 0.09	! : 0.09	# : 0.09	b : 0.05	[ : 0.05	f : 0.03	i : 0.03	" : 0.03	= : 0.01	) : 0.01	$ : 0.01	h : 0.01	
! : 0.13	e : 0.11	[ : 0.11	f : 0.09	g : 0.09	# : 0.09	c : 0.09	d : 0.05	a : 0.03	i : 0.03	" : 0.03	b : 0.03	= : 0.01	) : 0.01	$ : 0.01	
e : 0.30	[ : 0.18	! : 0.09	g : 0.09	d : 0.07	" : 0.05	f : 0.05	# : 0.03	i : 0.03	= : 0.01	c : 0.01	b : 0.01	
d : 0.37	e : 0.30	g : 0.09	[ : 0.05	f : 0.05	i : 0.03	" : 0.03	# : 0.01	= : 0.01	
d : 0.35	e : 0.24	[ : 0.09	g : 0.07	c : 0.07	f : 0.05	i : 0.03	" : 0.03	= : 0.01	
d : 0.35	e : 0.24	b : 0.13	c : 0.07	g : 0.05	f : 0.05	i : 0.03	= : 0.01	a : 0.01	
d : 0.33	e : 0.24	b : 0.13	c : 0.07	g : 0.05	f : 0.05	i : 0.03	= : 0.01	a : 0.01	o : 0.01	
n : 0.94	o : 0.05	
n : 0.94	o : 0.05	
n : 0.94	o : 0.05	
n : 0.94	o : 0.05	
n : 0.94	o : 0.05	
d : 0.33	e : 0.22	b : 0.13	c : 0.07	g : 0.05	f : 0.05	i : 0.03	o : 0.03	= : 0.01	a : 0.01	
d : 0.35	e : 0.24	b : 0.13	c : 0.07	g : 0.05	f : 0.05	i : 0.03	= : 0.01	] : 0.01	
d : 0.35	e : 0.24	] : 0.07	g : 0.07	c : 0.07	f : 0.05	i : 0.03	3 : 0.03	= : 0.01	a : 0.01	
d : 0.35	e : 0.30	g : 0.09	f : 0.05	4 : 0.03	i : 0.03	] : 0.03	3 : 0.03	= : 0.01	c : 0.01	
e : 0.30	] : 0.13	g : 0.09	d : 0.09	4 : 0.07	f : 0.07	2 : 0.05	3 : 0.05	a : 0.03	i : 0.03	= : 0.01	c : 0.01	
2 : 0.15	e : 0.11	c : 0.09	f : 0.09	g : 0.09	4 : 0.07	d : 0.07	] : 0.07	5 : 0.05	i : 0.03	3 : 0.03	b : 0.03	= : 0.01	> : 0.01	0 : 0.01	
2 : 0.13	e : 0.11	d : 0.11	g : 0.09	4 : 0.09	c : 0.07	b : 0.07	f : 0.05	5 : 0.05	i : 0.03	3 : 0.03	] : 0.03	a : 0.01	= : 0.01	> : 0.01	0 : 0.01	
d : 0.18	c : 0.13	e : 0.11	b : 0.07	f : 0.05	2 : 0.05	5 : 0.05	4 : 0.05	g : 0.03	i : 0.03	: : 0.03	3 : 0.03	] : 0.01	= : 0.01	> : 0.01	0 : 0.01	h : 0.01	a : 0.01	

#score	592.9657078003905
#seq	53
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_transcript_m3_run2.txt

#BEAR
c!!a!!hhhhhhhh"""dddd####ddddb	chr20:61484113-61484365(-)$1	252	43	73	9.6703
eeeeeeeeeebb==========[bbbbeee	chr1:228330777-228331027(+)$1	250	140	170	8.2738
===========!!eeeee[abb!!dddd[c	chr21:47612157-47612437(-)$1	280	151	181	11.0003
:ddddccc[dddd"""dddd[a"""bb[dd	chr21:46644319-46644582(+)$1	263	31	61	8.8251
ddeeeee[ccc!!a[ggggggg!!hhhhhh	chr3:9438829-9439066(-)$1	237	20	50	10.0930
fffdddd[hhhhhhhhffffff!!======	chr6:31865043-31865341(-)$1	298	198	228	8.7839
bbdddd[ggggggg[a[bb[bb[dddd[dd	chr19:1412417-1412674(+)$1	257	41	71	8.8262
dddd[a[ccc"""bb[ccc[bb####eeee	chr7:65338621-65338861(+)$1	240	113	143	10.3039
!!dddd"""bb[bb[eeeee####eeeee!	chr9:96929145-96929414(+)$1	269	51	81	9.8125
"""bb!!eeeee$$$$$eeeee"""ccc[d	chr11:75111429-75111648(+)$1	219	9	39	9.6099
[ccc[bb!!a!!dddd[eeeee"""ccc[b	chr21:44846348-44846606(-)$1	258	147	177	10.0169
'dddd!!ggggggg####ggggggg[bb[b	chr16:88553861-88554095(+)$1	234	83	113	9.1451
=====[abb[a!!a!!ffffff!!bb[ddd	chr19:1410214-1410481(+)$1	267	113	143	10.9369
c[iiiiiiiiieeeeeffffff!!a[dddd	chr7:5569656-5569905(-)$1	249	97	127	10.3523
[bb[ggggggg####bb[dddd"""ccc##	chr17:77812513-77812778(-)$1	265	64	94	10.8007
###dddd####ccc[ggggggg####dddd	chr16:85659237-85659472(+)$1	235	64	94	10.7764
nggggggg:iiiiiiiiidddd"""bb!!b	chr19:10406935-10407178(+)$1	243	139	169	9.8178
ffff[a[ggggggg"""bb[a[ccc####d	chr6:15248583-15248817(+)$1	234	71	101	9.0950
eee[a[bb[ffffff[bb[ccc"""fffff	chr11:3013145-3013465(-)$1	320	71	101	8.5380
bbffffff:gggggggcccccc"""eeeee	chr19:46174249-46174482(+)$1	233	138	168	8.8146
ooeeeeeiiiiiiiii!!ccc"""dddd[f	chr6:111196797-111197035(+)$1	238	61	91	10.9407
ggggggg[ccc[bb!!cccdddd!!ccc[f	chr22:20101489-20101767(-)$1	278	190	220	10.3792
ccc[a[a!!eeeee[a!!ccc"""dddd!!	chr16:85645403-85645694(+)$1	291	80	110	10.7081
bb[=========="""ggggggga[hhhhh	chr17:76122890-76123140(-)$1	250	2	32	10.9009
[eeeee[gggggggeeeeeeeeee[eeeee	chr9:101867477-101867761(+)$1	284	154	184	8.6531
hhhhhhh[ggggggg[ffffff!!bb$$$$	chr17:80054975-80055229(-)$1	254	2	32	8.8319
b22=============ffffff[cccgggg	chr1:54871251-54871488(-)$1	237	68	98	10.2183
eedddd[ggggggg[iiiiiiiii[bb$$$	chr19:1104091-1104328(+)$1	237	104	134	9.6811
feeeee"""iiiiiiiii[ccc####ffff	chr22:42229509-42229746(+)$1	237	26	56	11.5005
iiiiiiiii[dddd!!ffffff"""a[ggg	chr19:10829025-10829265(+)$1	240	58	88	11.7531
b[dddd[==========!!dddd!!ccc[d	chr9:133455117-133455368(+)$1	251	97	127	10.9954
===========[bb!!eeeeeooooooeee	chr19:18547577-18547844(-)$1	267	218	248	9.2294
============bb[dddd[bb[ggggggg	chr7:5634092-5634354(+)$1	262	11	41	10.1505
eeeccc"""==========[bb####eeee	chr1:46767564-46767850(-)$1	286	3	33	11.8588
ffffff[ggggggg[ggggggg"""dddd$	chr16:89042886-89043142(-)$1	256	33	63	11.5095
hhh[ccc[bb!!bb[a[dddd####ggggg	chr3:41241218-41241473(+)$1	255	28	58	10.1620
[=============!!ffffff[dddd[dd	chr21:46293169-46293468(-)$1	299	99	129	11.6788
!eeeee[a[a[ccc[bb!!ccc[a[bb[aa	chr7:23454365-23454634(-)$1	269	28	58	9.9981
=========="""a[eeeee[a!!bb[ccc	chr14:102228449-102228766(+)$1	317	34	64	11.6297
eeeeee[ggggggg!!ffffff"""ccc[f	chr19:50190021-50190274(+)$1	253	57	87	12.6657
ffffff[ggggggg!!ccciiiiiiiii[a	chr16:88545447-88545709(+)$1	262	28	58	10.2452
[eeeee[eeeee####ggggggg!!bblll	chr21:45734413-45734643(+)$1	230	97	127	9.0520
dddccc!!ccc[a[hhhhhhhh"""ccc[c	chr20:61484200-61484439(-)$1	239	40	70	10.1371
ddeeeee[ccc!!a[ggggggg!!hhhhhh	chr3:9438895-9439145(-)$1	250	99	129	10.0930
"ccc[eeeeebb####ffffff[dddd[ff	chr19:575243-575523(+)$1	280	141	171	8.6071
"==============[ffffff!!eeeee[	chr5:138629681-138629966(+)$1	285	71	101	12.2528
ccc[cccggggggg[ggggggg"""eeeee	chr22:20849721-20850070(-)$1	349	238	268	11.8839
a============####dddd####dddd[	chr6:15248992-15249231(+)$1	239	17	47	12.6824
ggiiiiiiiii"""ggggggg[a[dddd!!	chr5:81045927-81046158(-)$1	231	38	68	11.3491
d!!============ffffff$$$$$bb[e	chr19:2270579-2270845(+)$1	266	135	165	11.2781
""dddd!!bb!!bbffffff[a####bb[a	chr9:140713929-140714253(+)$1	324	15	45	10.4107

#otherMatches

#Seq PSSM
CAUGCUUCUGCGGACUAGGUGACUAUACUU	chr20:61484113-61484365(-)$1	252	43	73	9.6703
GGCCUUGGGGCAGCCCUGUCAGGCCCACCA	chr1:228330777-228331027(+)$1	250	140	170	8.2738
GGGACCCACAGUUGAGCUGGGCCCGCUGAG	chr21:47612157-47612437(-)$1	280	151	181	11.0003
UCCCAAGCCGUCCAGGCAGGAGGAAGGCAG	chr21:46644319-46644582(+)$1	263	31	61	8.8251
GGGGGCCGUCUGGUGGCUUGCGGGGGUUGC	chr3:9438829-9439066(-)$1	237	20	50	10.0930
GCCGUCCACCGGGCUGGGGGGCAGCGGGUG	chr6:31865043-31865341(-)$1	298	198	228	8.7839
AGAGCCAGGUGGGGUCUGUGGGGAGGCAGG	chr19:1412417-1412674(+)$1	257	41	71	8.8262
GCCUGAGCCCAGGCCgcggggcggaggugg	chr7:65338621-65338861(+)$1	240	113	143	10.3039
aagugcgaggggcggggggacagggcggga	chr9:96929145-96929414(+)$1	269	51	81	9.8125
GAUGAAGAGAUGAUGACGAGUCUGACUUGG	chr11:75111429-75111648(+)$1	219	9	39	9.6099
gugugggagcggguccgcgcccagaggugc	chr21:44846348-44846606(-)$1	258	147	177	10.0169
UGGGGGAGAGGUUUCAGAGGGGUCUGCAGC	chr16:88553861-88554095(+)$1	234	83	113	9.1451
GGGUUUGGCACGCGGACCCUACAUGGUGGA	chr19:1410214-1410481(+)$1	267	113	143	10.9369
AUUGCGCGUGCGCGCUGGUCCUUUGGGCGC	chr7:5569656-5569905(-)$1	249	97	127	10.3523
ggaggcgggguggaggugggguggagggag	chr17:77812513-77812778(-)$1	265	64	94	10.8007
UCACAGCAGGACUGCAGCUUCAAGGGUGUC	chr16:85659237-85659472(+)$1	235	64	94	10.7764
gggccggccUGGCCUUCUACGUGCAGUCCA	chr19:10406935-10407178(+)$1	243	139	169	9.8178
gcggggagggggugggagcgggggcggggg	chr6:15248583-15248817(+)$1	234	71	101	9.0950
ggcgcggcggcggccAUCUCUGGAAGCCUC	chr11:3013145-3013465(-)$1	320	71	101	8.5380
CGCCCUCCGAGUGGGCGGGGCUAGAGCCGG	chr19:46174249-46174482(+)$1	233	138	168	8.8146
CGGGCGUGCCGGCUUCGGGGAAUGGAGGGC	chr6:111196797-111197035(+)$1	238	61	91	10.9407
GCCCUCAACCAAGUGGGGCAAGGAGGAGGC	chr22:20101489-20101767(-)$1	278	190	220	10.3792
GCGGGGGAGGCGGGCUCGCGGGGACGGCAG	chr16:85645403-85645694(+)$1	291	80	110	10.7081
CCUCACCAUUUAUGUACCUGGGGUGAUAGG	chr17:76122890-76123140(-)$1	250	2	32	10.9009
acccggccUCUGGCUCGCUCCUGCUCUUUC	chr9:101867477-101867761(+)$1	284	154	184	8.6531
CCAGCCCUCAUGCUGGAGGAGGAGCCGGCG	chr17:80054975-80055229(-)$1	254	2	32	8.8319
GGAUCGGGGAAGGGGCGGUGGGGGGAGCCG	chr1:54871251-54871488(-)$1	237	68	98	10.2183
CGCCGGCGUGGGGAACCCUCAGGCUCCAGU	chr19:1104091-1104328(+)$1	237	104	134	9.6811
CGACCCAGCUGCGCCGCUCCGGGAGGCCGU	chr22:42229509-42229746(+)$1	237	26	56	11.5005
GCGGGCGCGGCAGGGAUCGCGGGCGGGUGG	chr19:10829025-10829265(+)$1	240	58	88	11.7531
AGGGGUUCGGGCCUGGGGGGCGGGAGGCAG	chr9:133455117-133455368(+)$1	251	97	127	10.9954
GGGGCUGCAGGAGCAACUGUGGCCGCACAU	chr19:18547577-18547844(-)$1	267	218	248	9.2294
CUCCCUCGCCCCCUUUGUCCUGCUCCAUCU	chr7:5634092-5634354(+)$1	262	11	41	10.1505
AGGCCUGAAGGCGGCCGGGACCAAAGGGCC	chr1:46767564-46767850(-)$1	286	3	33	11.8588
CUGCCGGCUGCUCCGCACCCCGGGGUCCCA	chr16:89042886-89043142(-)$1	256	33	63	11.5095
GCGGCGGGCUGGGCGCAGCCGGGAGGCCUG	chr3:41241218-41241473(+)$1	255	28	58	10.1620
GUGGGUCCAGGUCGGGGUCGGGGUCGGGGU	chr21:46293169-46293468(-)$1	299	99	129	11.6788
AUGCAGUGAUGCUGACUGACGGAUGGGGAC	chr7:23454365-23454634(-)$1	269	28	58	9.9981
CCCGGGCCGCUGGGACCUUCGUGAUGGGCC	chr14:102228449-102228766(+)$1	317	34	64	11.6297
uaggggaugggggcagccggggugggggau	chr19:50190021-50190274(+)$1	253	57	87	12.6657
GCCCACUCCCUCAGCUGCCCUAGUGCCUGG	chr16:88545447-88545709(+)$1	262	28	58	10.2452
GGGGGUGCCUGGAAUGCCGCCCUCUGGUUC	chr21:45734413-45734643(+)$1	230	97	127	9.0520
CGGGUGACUAUGCUUCUGUGGACCGGGUGA	chr20:61484200-61484439(-)$1	239	40	70	10.1371
GGGGGCCGUCUGGUGGCUUGCGGGGGUUGC	chr3:9438895-9439145(-)$1	250	99	129	10.0930
GGGUGAGUGCCCAAGGUUGGCCGUCCGCGU	chr19:575243-575523(+)$1	280	141	171	8.6071
AGGGCCCAGGGUGCGGCGGGAGAUUUUGGG	chr5:138629681-138629966(+)$1	285	71	101	12.2528
CGUAGGGGCCGGGAUCUGGCGCUCGGCCAG	chr22:20849721-20850070(-)$1	349	238	268	11.8839
CCCCUCCUCCUCCGUGACGUCAAAAGUCGG	chr6:15248992-15249231(+)$1	239	17	47	12.6824
GCGGCGCCCGCAGUCCCCCGCGCAUCGCgg	chr5:81045927-81046158(-)$1	231	38	68	11.3491
GGUGCUGGCGGUGCCGCGGUUUGGGGGCCG	chr19:2270579-2270845(+)$1	266	135	165	11.2781
GAGGCCGACUUAGGGGCGCCGUGUACCGAG	chr9:140713929-140714253(+)$1	324	15	45	10.4107

#DB
(..(..((((((((...((((....(((((	chr20:61484113-61484365(-)$1	1	43	73	9.6703
((((((((((((((((((((((.(((((((	chr1:228330777-228331027(+)$1	1	140	170	8.2738
(((((((((((..(((((.(((..((((.(	chr21:47612157-47612437(-)$1	1	151	181	11.0003
.(((((((.((((...((((.(...((.((	chr21:46644319-46644582(+)$1	1	31	61	8.8251
(((((((.(((..(.(((((((..((((((	chr3:9438829-9439066(-)$1	1	20	50	10.0930
)))((((.((((((((((((((..((((((	chr6:31865043-31865341(-)$1	1	198	228	8.7839
((((((.(((((((.(.((.((.((((.((	chr19:1412417-1412674(+)$1	1	41	71	8.8262
((((.(.(((...((.(((.((....((((	chr7:65338621-65338861(+)$1	1	113	143	10.3039
..((((...((.((.(((((....(((((.	chr9:96929145-96929414(+)$1	1	51	81	9.8125
...((..(((((.....(((((...(((.(	chr11:75111429-75111648(+)$1	1	9	39	9.6099
.(((.((..(..((((.(((((...(((.(	chr21:44846348-44846606(-)$1	1	147	177	10.0169
.((((..(((((((....(((((((.((.(	chr16:88553861-88554095(+)$1	1	83	113	9.1451
(((((.(((.(..(..((((((..((.(((	chr19:1410214-1410481(+)$1	1	113	143	10.9369
(.((((((((((((((((((((..(.((((	chr7:5569656-5569905(-)$1	1	97	127	10.3523
.((.(((((((....((.((((...(((..	chr17:77812513-77812778(-)$1	1	64	94	10.8007
...((((....(((.(((((((....((((	chr16:85659237-85659472(+)$1	1	64	94	10.7764
.))))))).(((((((((((((...((..(	chr19:10406935-10407178(+)$1	1	139	169	9.8178
((((.(.(((((((...((.(.(((....(	chr6:15248583-15248817(+)$1	1	71	101	9.0950
(((.(.((.((((((.((.(((...(((((	chr11:3013145-3013465(-)$1	1	71	101	8.5380
)))))))).(((((((((((((...(((((	chr19:46174249-46174482(+)$1	1	138	168	8.8146
..)))))(((((((((..(((...((((.(	chr6:111196797-111197035(+)$1	1	61	91	10.9407
(((((((.(((.((..(((((((..(((.(	chr22:20101489-20101767(-)$1	1	190	220	10.3792
(((.(.(..(((((.(..(((...((((..	chr16:85645403-85645694(+)$1	1	80	110	10.7081
((.((((((((((...((((((((.(((((	chr17:76122890-76123140(-)$1	1	2	32	10.9009
.(((((.(((((((((((((((((.(((((	chr9:101867477-101867761(+)$1	1	154	184	8.6531
(((((((.(((((((.((((((..((....	chr17:80054975-80055229(-)$1	1	2	32	8.8319
)..)))))))))))))((((((.(((((((	chr1:54871251-54871488(-)$1	1	68	98	10.2183
((((((.(((((((.(((((((((.((...	chr19:1104091-1104328(+)$1	1	104	134	9.6811
((((((...(((((((((.(((....((((	chr22:42229509-42229746(+)$1	1	26	56	11.5005
(((((((((.((((..((((((...(.(((	chr19:10829025-10829265(+)$1	1	58	88	11.7531
(.((((.((((((((((..((((..(((.(	chr9:133455117-133455368(+)$1	1	97	127	10.9954
(((((((((((.((..(((((......)))	chr19:18547577-18547844(-)$1	1	218	248	9.2294
((((((((((((((.((((.((.(((((((	chr7:5634092-5634354(+)$1	1	11	41	10.1505
((((((...((((((((((.((....((((	chr1:46767564-46767850(-)$1	1	3	33	11.8588
((((((.(((((((.(((((((...((((.	chr16:89042886-89043142(-)$1	1	33	63	11.5095
(((.(((.((..((.(.((((....(((((	chr3:41241218-41241473(+)$1	1	28	58	10.1620
.(((((((((((((..((((((.((((.((	chr21:46293169-46293468(-)$1	1	99	129	11.6788
.(((((.(.(.(((.((..(((.(.((.((	chr7:23454365-23454634(-)$1	1	28	58	9.9981
((((((((((...(.(((((.(..((.(((	chr14:102228449-102228766(+)$1	1	34	64	11.6297
((((((.(((((((..((((((...(((.(	chr19:50190021-50190274(+)$1	1	57	87	12.6657
((((((.(((((((..((((((((((((.(	chr16:88545447-88545709(+)$1	1	28	58	10.2452
.(((((.(((((....(((((((..((...	chr21:45734413-45734643(+)$1	1	97	127	9.0520
)))(((..(((.(.((((((((...(((.(	chr20:61484200-61484439(-)$1	1	40	70	10.1371
(((((((.(((..(.(((((((..((((((	chr3:9438895-9439145(-)$1	1	99	129	10.0930
.(((.(((((((....((((((.((((.((	chr19:575243-575523(+)$1	1	141	171	8.6071
.((((((((((((((.((((((..(((((.	chr5:138629681-138629966(+)$1	1	71	101	12.2528
(((.((((((((((.(((((((...(((((	chr22:20849721-20850070(-)$1	1	238	268	11.8839
(((((((((((((....((((....((((.	chr6:15248992-15249231(+)$1	1	17	47	12.6824
))(((((((((...(((((((.(.((((..	chr5:81045927-81046158(-)$1	1	38	68	11.3491
(..((((((((((((((((((.....((.(	chr19:2270579-2270845(+)$1	1	135	165	11.2781
..((((..((..((((((((.(....((.(	chr9:140713929-140714253(+)$1	1	15	45	10.4107

#PSSM
e : 0.09	= : 0.09	d : 0.09	f : 0.09	b : 0.09	[ : 0.09	c : 0.07	" : 0.07	! : 0.03	g : 0.03	h : 0.03	: : 0.01	' : 0.01	# : 0.01	n : 0.01	o : 0.01	i : 0.01	a : 0.01	
e : 0.17	= : 0.15	d : 0.11	f : 0.07	b : 0.07	c : 0.07	! : 0.05	g : 0.05	" : 0.03	[ : 0.03	h : 0.03	# : 0.01	o : 0.01	2 : 0.01	i : 0.01	
e : 0.21	d : 0.17	= : 0.15	f : 0.09	c : 0.07	i : 0.05	! : 0.03	g : 0.03	h : 0.03	" : 0.01	b : 0.01	# : 0.01	[ : 0.01	2 : 0.01	
= : 0.21	d : 0.19	e : 0.17	[ : 0.09	c : 0.07	f : 0.07	i : 0.05	g : 0.03	a : 0.01	b : 0.01	h : 0.01	
= : 0.21	e : 0.17	d : 0.17	[ : 0.07	c : 0.07	i : 0.05	g : 0.05	f : 0.05	a : 0.03	! : 0.01	b : 0.01	h : 0.01	
e : 0.19	= : 0.19	d : 0.13	c : 0.09	! : 0.05	[ : 0.05	i : 0.05	g : 0.05	f : 0.05	a : 0.03	b : 0.01	h : 0.01	
[ : 0.21	= : 0.19	e : 0.09	! : 0.07	c : 0.05	" : 0.05	i : 0.05	g : 0.05	h : 0.03	d : 0.03	b : 0.03	a : 0.03	f : 0.01	
= : 0.21	g : 0.21	[ : 0.11	e : 0.07	! : 0.07	i : 0.07	" : 0.05	c : 0.03	b : 0.03	h : 0.01	# : 0.01	f : 0.01	a : 0.01	
= : 0.21	g : 0.21	c : 0.09	e : 0.07	i : 0.07	[ : 0.05	" : 0.05	b : 0.05	h : 0.03	! : 0.03	: : 0.03	# : 0.01	
= : 0.23	g : 0.23	e : 0.09	c : 0.09	i : 0.09	b : 0.05	h : 0.03	a : 0.03	[ : 0.03	d : 0.01	# : 0.01	f : 0.01	
g : 0.23	= : 0.21	i : 0.09	c : 0.07	b : 0.05	e : 0.05	! : 0.05	h : 0.03	d : 0.03	" : 0.03	a : 0.01	# : 0.01	f : 0.01	[ : 0.01	
g : 0.21	= : 0.17	! : 0.13	[ : 0.07	e : 0.07	" : 0.05	i : 0.05	h : 0.03	b : 0.03	d : 0.03	c : 0.03	# : 0.01	f : 0.01	
g : 0.21	= : 0.17	b : 0.11	! : 0.07	d : 0.05	" : 0.05	# : 0.05	i : 0.05	h : 0.03	e : 0.03	c : 0.03	$ : 0.01	f : 0.01	a : 0.01	
g : 0.21	= : 0.13	b : 0.13	a : 0.07	# : 0.07	e : 0.05	" : 0.05	i : 0.05	h : 0.03	d : 0.03	c : 0.03	$ : 0.01	f : 0.01	[ : 0.01	
[ : 0.25	! : 0.13	= : 0.11	# : 0.09	" : 0.07	e : 0.05	i : 0.05	g : 0.05	h : 0.03	f : 0.03	b : 0.01	$ : 0.01	d : 0.01	
g : 0.13	! : 0.13	e : 0.09	" : 0.07	= : 0.07	[ : 0.07	# : 0.07	i : 0.07	a : 0.05	h : 0.03	d : 0.03	b : 0.03	f : 0.03	$ : 0.01	
f : 0.23	g : 0.15	e : 0.09	c : 0.07	= : 0.05	[ : 0.05	b : 0.05	i : 0.05	" : 0.03	d : 0.03	# : 0.03	! : 0.03	$ : 0.01	h : 0.01	
f : 0.23	g : 0.15	e : 0.13	d : 0.09	c : 0.07	! : 0.07	b : 0.05	i : 0.05	= : 0.03	# : 0.01	[ : 0.01	h : 0.01	
f : 0.23	g : 0.17	d : 0.13	c : 0.11	e : 0.11	[ : 0.05	= : 0.03	b : 0.03	! : 0.03	i : 0.01	h : 0.01	
f : 0.23	g : 0.17	d : 0.15	e : 0.11	c : 0.11	[ : 0.09	i : 0.03	= : 0.01	a : 0.01	h : 0.01	
f : 0.21	g : 0.17	d : 0.13	c : 0.11	b : 0.09	e : 0.07	[ : 0.05	i : 0.03	= : 0.01	# : 0.01	a : 0.01	h : 0.01	
f : 0.19	g : 0.15	b : 0.09	# : 0.07	d : 0.07	c : 0.07	a : 0.05	e : 0.05	[ : 0.03	" : 0.03	i : 0.03	= : 0.01	o : 0.01	h : 0.01	$ : 0.01	
" : 0.27	# : 0.17	! : 0.17	[ : 0.13	g : 0.05	d : 0.03	i : 0.03	c : 0.01	e : 0.01	o : 0.01	a : 0.01	$ : 0.01	
" : 0.27	! : 0.23	# : 0.17	d : 0.05	g : 0.03	c : 0.03	a : 0.03	i : 0.03	b : 0.01	e : 0.01	o : 0.01	[ : 0.01	$ : 0.01	
" : 0.23	# : 0.15	d : 0.13	b : 0.07	[ : 0.07	! : 0.05	h : 0.03	e : 0.03	g : 0.03	c : 0.03	= : 0.01	a : 0.01	o : 0.01	i : 0.01	$ : 0.01	
d : 0.19	b : 0.17	c : 0.15	# : 0.11	e : 0.09	h : 0.05	[ : 0.03	g : 0.03	= : 0.01	f : 0.01	a : 0.01	o : 0.01	i : 0.01	$ : 0.01	
d : 0.23	b : 0.17	e : 0.13	c : 0.13	h : 0.05	[ : 0.05	g : 0.05	f : 0.03	= : 0.01	# : 0.01	$ : 0.01	o : 0.01	i : 0.01	
d : 0.19	e : 0.17	c : 0.15	[ : 0.09	g : 0.07	h : 0.05	b : 0.05	f : 0.03	$ : 0.03	= : 0.01	! : 0.01	# : 0.01	i : 0.01	l : 0.01	
[ : 0.23	d : 0.17	e : 0.17	g : 0.07	h : 0.05	! : 0.05	f : 0.05	# : 0.03	$ : 0.03	= : 0.01	a : 0.01	c : 0.01	l : 0.01	
d : 0.17	e : 0.15	f : 0.11	b : 0.07	g : 0.07	c : 0.05	h : 0.05	! : 0.05	$ : 0.05	a : 0.05	[ : 0.03	= : 0.01	# : 0.01	l : 0.01	

#score	524.9312322647415
#seq	51
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_transcript_m1_run1.txt

#BEAR
ffccc!!ddddtttttttttttdddd22ccc	chr5:95131559-95131830(+)$1	271	62	93	24.1842
===========yyyyyyyyyyyyyyyy====	chr17:56081901-56082162(-)$1	261	9	40	22.8993
:hhhhhhhhwwwwwwwwwwwwwwhhhhhhhh	chr22:30732916-30733223(-)$1	307	27	58	20.7949
cdddd[eeeeettttttttttteeeee]ddd	chr4:183811550-183811803(-)$1	253	183	214	23.6220
[==========uuuuuuuuuuuu========	chr17:7215448-7215661(+)$1	213	149	180	26.9860
eeee!!ddddwwwwwwwwwwwwwwdddd22e	chr22:37624237-37624532(-)$1	295	64	95	24.3359
e"""dddd[ccctttttttttttcccdddd6	chr11:118620644-118620898(-)$1	254	128	159	23.0091
ccchhhhhhhhuuuuuuuuuuuuhhhhhhhh	chr1:32799450-32799674(-)$1	224	166	197	23.2420
hhhhhhddddvvvvvvvvvvvvvdddd====	chr16:15819986-15820276(+)$1	290	192	223	25.1246
hhhhhhbbbbvvvvvvvvvvvvvbb]bbiii	chr2:65496168-65496445(+)$1	277	160	191	22.9330
cc[a"""ddddtttttttttttdddd4444a	chr14:65541895-65542106(-)$1	211	56	87	24.7899
iiii####ddddtttttttttttdddd]iii	chr16:12757811-12758142(-)$1	331	94	125	24.6652
iiiiiiiiyyyyyyyyyyyyyyyyiiiiiii	chr1:12268635-12268917(+)$1	282	6	37	22.9912
iiiiiiii[bbuuuuuuuuuuuubb]iiiii	chr19:3490879-3491193(-)$1	314	277	308	25.7648
iii"""ddddattttttttttta]dddd]ii	chr1:205683170-205683392(-)$1	222	56	87	25.7718
ee####eeeeettttttttttteeeee22ee	chr10:94213023-94213275(-)$1	252	152	183	24.1209
(((ccceeeeewwwwwwwwwwwwwweeeee5	chr17:40465590-40465868(-)$1	278	35	66	21.0690
!!ffffffbbvvvvvvvvvvvvvbb]fffff	chr5:95130971-95131208(+)$1	237	105	136	23.2276
ddd"""ddddwwwwwwwwwwwwwwdddd22d	chr19:4046993-4047237(-)$1	244	141	172	24.2454
[iiiiiiiiivvvvvvvvvvvvviiiiiiii	chr2:159313542-159313821(+)$1	279	88	119	26.7590
[dddd[eeeeeuuuuuuuuuuuueeeee22d	chr7:128410174-128410423(+)$1	249	130	161	25.0983
ee$$$$$dddduuuuuuuuuuuudddd333e	chrX:77382662-77382914(+)$1	252	216	247	25.0412
gggg!!ddddvvvvvvvvvvvvvdddd22gg	chr7:131174517-131174815(+)$1	298	104	135	26.0677
ffffbbbb[bbvvvvvvvvvvvvvbb]bb]b	chr16:1749169-1749440(+)$1	271	216	247	22.4487
Heeeee[ddddtttttttttttddddeeeee	chr5:151190368-151190604(+)$1	236	46	77	22.9845
+dddd[eeeeevvvvvvvvvvvvveeeee]d	chr3:49396678-49396900(-)$1	222	30	61	24.7774
::iiiiiiiiitttttttttttiiiiiiiii	chr9:73002127-73002394(-)$1	267	1	32	23.2292
dddd"""dddduuuuuuuuuuuudddd22dd	chr20:56072418-56072659(-)$1	241	140	171	25.0776
=====[eeeeeuuuuuuuuuuuueeeee===	chr12:24970171-24970425(-)$1	254	32	63	26.4311
eee[cccdddduuuuuuuuuuuudddd4444	chr4:76569169-76569439(-)$1	270	72	103	25.4566
$a[ccc[cccvvvvvvvvvvvvvccc]ccc]	chr17:80230784-80231022(-)$1	238	29	60	25.7768
ggggggcccbbuuuuuuuuuuuubb]ccc44	chr6:163989185-163989437(+)$1	252	169	200	24.9937
eeee!!eeeeevvvvvvvvvvvvveeeee55	chr10:51590169-51590456(+)$1	287	139	170	24.4040
e!!hhhhhhhhuuuuuuuuuuuuhhhhhhhh	chr5:137842693-137842957(-)$1	264	40	71	23.4286
""ccc!!cccwwwwwwwwwwwwwwccc]ccc	chr15:41773649-41773891(+)$1	242	204	235	24.8577
"ccc"""a[ccctttttttttttccc]a333	chr7:129473658-129473925(-)$1	267	78	109	25.1555
!dddd[ccc[avvvvvvvvvvvvva]ccc]d	chr20:31172135-31172393(-)$1	258	79	110	25.5902
F:::ggggggguuuuuuuuuuuuggggggg:	chr7:44252167-44252412(+)$1	245	14	45	21.2159
eee[gggggggtttttttttttggggggg33	chr16:18818898-18819164(-)$1	266	220	251	24.5722
ggggggeeeeeuuuuuuuuuuuueeeee:DD	chr15:45901253-45901478(+)$1	225	94	125	22.2133
:iiiiiiiiivvvvvvvvvvvvviiiiiiii	chr6:108532789-108533048(-)$1	259	138	169	25.7120
cc####eeeeettttttttttteeeeecccf	chr4:89442339-89442616(-)$1	277	167	198	24.3867
[eeeee[cccvvvvvvvvvvvvvccc]eeee	chr5:72205098-72205373(+)$1	275	73	104	25.0421
!!ccc[ddddwwwwwwwwwwwwwwddddccc	chr3:179342020-179342313(+)$1	293	95	126	24.8284
ffffggggggguuuuuuuuuuuuggggggg:	chr1:167511090-167511409(-)$1	319	169	200	24.2181
eeee[ffffffvvvvvvvvvvvvvffffff]	chr1:218505287-218505524(+)$1	237	45	76	23.7805
fffff!!dddduuuuuuuuuuuudddd]fff	chr1:25826088-25826407(+)$1	319	22	53	24.8587
[a[ccc!!ccctttttttttttccc22ccc3	chr1:52485930-52486238(-)$1	308	8	39	24.5302
=======:cccyyyyyyyyyyyyyyyyccc:	chr6:41903021-41903426(-)$1	405	72	103	20.4435
ccc"""eeeeewwwwwwwwwwwwwweeeee2	chr6:163988201-163988457(+)$1	256	136	167	24.1500
gggggggddddvvvvvvvvvvvvvdddd]gg	chr2:70107426-70107737(+)$1	311	0	31	26.0337
!ccc!!bb[bbvvvvvvvvvvvvvbb]bb22	chr3:141669779-141670024(-)$1	245	77	108	24.2767
e####dddd[awwwwwwwwwwwwwwa]dddd	chr6:35541739-35541985(-)$1	246	17	48	23.3623
ddgggggggwwwwwwwwwwwwwwggggggg]	chr7:141353268-141353513(+)$1	245	96	127	23.9121
::iiiiiiiiitttttttttttiiiiiiiii	chr3:48786390-48786673(-)$1	283	22	53	23.2292
gg"""gggggggtttttttttttgggggggg	chr10:98280779-98281010(-)$1	231	29	60	24.2580
===========wwwwwwwwwwwwww======	chr10:27399430-27399703(-)$1	273	169	200	25.3196
[dddd[eeeeevvvvvvvvvvvvveeeee]d	chr1:54692256-54692575(-)$1	319	209	240	25.4976

#otherMatches

#Seq PSSM
GAACUAAGGCCUUUCCUUUCUUGGCCAAAGU	chr5:95131559-95131830(+)$1	271	62	93	24.1842
CUACAAUUGCUUUGCUUUUUAAACCUUGGCA	chr17:56081901-56082162(-)$1	261	9	40	22.8993
UGGGGCUGCUUAUUCUUGUCUUUGCAGCCUU	chr22:30732916-30733223(-)$1	307	27	58	20.7949
CCGUGAGUGGAUUGUGAGAAAUUCCACCCAC	chr4:183811550-183811803(-)$1	253	183	214	23.6220
GUCUCUCCCCAAACCCCUUUAGAUggggagg	chr17:7215448-7215661(+)$1	213	149	180	26.9860
UGUGCAGCUUGAAAUGGACAUGGGAAGUCAC	chr22:37624237-37624532(-)$1	295	64	95	24.3359
CUUUUUUGACUCUGCCUACUUCUGAGCAAAC	chr11:118620644-118620898(-)$1	254	128	159	23.0091
UGCUAAAACCAUUCUCUUCCACCUGGUUUUA	chr1:32799450-32799674(-)$1	224	166	197	23.2420
ggugcucaauaaauacuuaucaaauUGGAAA	chr16:15819986-15820276(+)$1	290	192	223	25.1246
AAUGUGGCGCUUUCAACUGUACUGCUGCAGC	chr2:65496168-65496445(+)$1	277	160	191	22.9330
UGUGUUUAGGCCUCAUUUCUUUGUCUUUUUC	chr14:65541895-65542106(-)$1	211	56	87	24.7899
UGAAACCAAAGCUCUAAAACGCCGCUUCUUC	chr16:12757811-12758142(-)$1	331	94	125	24.6652
UCUGGGAGGAAGCAGGUUGAGGGGCUCCUGG	chr1:12268635-12268917(+)$1	282	6	37	22.9912
GGUCCCUGAGUGGGUCAGGUAGGGCACAGGG	chr19:3490879-3491193(-)$1	314	277	308	25.7648
AUAAAAACCCCUGAAGUAUUGUGUGGGUGUG	chr1:205683170-205683392(-)$1	222	56	87	25.7718
UUAAGUUAUUUUUUGAAUAUAUAAAUAUAAA	chr10:94213023-94213275(-)$1	252	152	183	24.1209
CACUCUUCAGUACAUAAUAAGCUUAACUGAU	chr17:40465590-40465868(-)$1	278	35	66	21.0690
UUUUCAUGAGCAUAUUCGCACCCCUAUAUGA	chr5:95130971-95131208(+)$1	237	105	136	23.2276
GCCACUGAGACACAAACCUAUUUAUUUCUAG	chr19:4046993-4047237(-)$1	244	141	172	24.2454
cgcggcACUUUUUUAAUUUUUUCGGGUGCCG	chr2:159313542-159313821(+)$1	279	88	119	26.7590
UAGAGUGGGGAUUUUUUUCUUCUUCCCUUUC	chr7:128410174-128410423(+)$1	249	130	161	25.0983
uauuucuuucCUGUCCUUUUAAUGGAGUUUU	chrX:77382662-77382914(+)$1	252	216	247	25.0412
AGAAUUUUUCCCCCUUCAUUUCUGAAAUUUU	chr7:131174517-131174815(+)$1	298	104	135	26.0677
GAGGCGUAAGCAGAAACACUAACAGUAUAUU	chr16:1749169-1749440(+)$1	271	216	247	22.4487
AGGAAGUCACUGGCCAGUUUGAGGUGCUUCC	chr5:151190368-151190604(+)$1	236	46	77	22.9845
UCGGCCCCAUGUAUCUCAGUACCCCAUGGAG	chr3:49396678-49396900(-)$1	222	30	61	24.7774
uuuucuccuuuuauuuuuUUGCGGGGGAGGG	chr9:73002127-73002394(-)$1	267	1	32	23.2292
AAGAUCAUUGAUAAGCCCUAAAUUCAAAUUC	chr20:56072418-56072659(-)$1	241	140	171	25.0776
UGAUGUCACAGCCUGAGCAUACUCUGUGCAU	chr12:24970171-24970425(-)$1	254	32	63	26.4311
UUUUUAGUGACAUUUUAAAAGCAGUCAGAUU	chr4:76569169-76569439(-)$1	270	72	103	25.4566
gcggacgugggggaggggcaggaccaggucg	chr17:80230784-80231022(-)$1	238	29	60	25.7768
AUUAUUGGCCUACUUAAUACUCCAGUGCCUU	chr6:163989185-163989437(+)$1	252	169	200	24.9937
GAGAAGUGGGGUUUAUAAUGUUUUCUCUAAG	chr10:51590169-51590456(+)$1	287	139	170	24.4040
CAAAUGUGGGACUUACAAGCACUUCUCACAU	chr5:137842693-137842957(-)$1	264	40	71	23.4286
ACGUAGAACUUCUUUUUCUCACCCAGUAUAC	chr15:41773649-41773891(+)$1	242	204	235	24.8577
UGUGUAUUGUGCUUAGAAAGGUUGCAGAUUU	chr7:129473658-129473925(-)$1	267	78	109	25.1555
gcgggggcggggUGGGGGUGUGGAUGUGUGU	chr20:31172135-31172393(-)$1	258	79	110	25.5902
GGAAGGCUCUGUGGGAGGGAGGUCGGAGCCA	chr7:44252167-44252412(+)$1	245	14	45	21.2159
AUUCUGAUUGCCACGUUAAUCUGUAAUCGUU	chr16:18818898-18819164(-)$1	266	220	251	24.5722
UAUUUCAGUAACAAAAACAUACCUUACUAGA	chr15:45901253-45901478(+)$1	225	94	125	22.2133
ACUGCACACAUAAGAUACAUACUUGUGUGCA	chr6:108532789-108533048(-)$1	259	138	169	25.7120
ACUAUUUCUUAUUCCAUUCAUCUAAGAGUCA	chr4:89442339-89442616(-)$1	277	167	198	24.3867
GCCAAAUGAGUCACUCCUUUUACCUUUUUUG	chr5:72205098-72205373(+)$1	275	73	104	25.0421
GUCUAAUAAUGUUAAGCACCAGUAAUUAUAG	chr3:179342020-179342313(+)$1	293	95	126	24.8284
CAGUGGUGCUCUUGAAGAGGAAUGAGUACCA	chr1:167511090-167511409(-)$1	319	169	200	24.2181
UUAUUUUAUUUCCUUUCauuuauuaaauaau	chr1:218505287-218505524(+)$1	237	45	76	23.7805
GUGUAUUAUACAUGGGUAGAAAAGUGUUUGC	chr1:25826088-25826407(+)$1	319	22	53	24.8587
GUAGCAUCUUUUCUACAACGUUAAAAUUGCA	chr1:52485930-52486238(-)$1	308	8	39	24.5302
CCCCUGGGGGCUCUCAUGUUUUCAACUGCCA	chr6:41903021-41903426(-)$1	405	72	103	20.4435
GUCAAGUACUUAGCUAAAAUCAACAAAGUGA	chr6:163988201-163988457(+)$1	256	136	167	24.1500
CUUAAUUGAAACCAAAAUUUUUUCUUUCUAG	chr2:70107426-70107737(+)$1	311	0	31	26.0337
GCCCAAAUUGGUUCUUUUUUAAAUCCCAUGG	chr3:141669779-141670024(-)$1	245	77	108	24.2767
UCAAUUUGUGAGUUUUUUCCUUUAAUGAUAA	chr6:35541739-35541985(-)$1	246	17	48	23.3623
uaccccaaaccuaauaacccaaauuugggga	chr7:141353268-141353513(+)$1	245	96	127	23.9121
AGAUAAAUUUGAAUGUUGUAACCAAGUUUAU	chr3:48786390-48786673(-)$1	283	22	53	23.2292
AUUUGGGUGGGCUUUUACAUCUUGCCUACCA	chr10:98280779-98281010(-)$1	231	29	60	24.2580
AGAUUUUGUGAAUAUGAACAUGCUGUUAUAG	chr10:27399430-27399703(-)$1	273	169	200	25.3196
GCUUUCUUCUUaaaaaaaaaaaaaaaggaaa	chr1:54692256-54692575(-)$1	319	209	240	25.4976

#DB
(((((..((((...........))))..)))	chr5:95131559-95131830(+)$1	1	62	93	24.1842
(((((((((((................))))	chr17:56081901-56082162(-)$1	1	9	40	22.8993
.((((((((..............))))))))	chr22:30732916-30733223(-)$1	1	27	58	20.7949
(((((.(((((...........))))).)))	chr4:183811550-183811803(-)$1	1	183	214	23.6220
.((((((((((............))))))))	chr17:7215448-7215661(+)$1	1	149	180	26.9860
((((..((((..............))))..)	chr22:37624237-37624532(-)$1	1	64	95	24.3359
(...((((.(((...........))))))).	chr11:118620644-118620898(-)$1	1	128	159	23.0091
(((((((((((............))))))))	chr1:32799450-32799674(-)$1	1	166	197	23.2420
))))))((((.............))))((((	chr16:15819986-15820276(+)$1	1	192	223	25.1246
))))))((((.............)).))(((	chr2:65496168-65496445(+)$1	1	160	191	22.9330
((.(...((((...........))))....)	chr14:65541895-65542106(-)$1	1	56	87	24.7899
((((....((((...........)))).)))	chr16:12757811-12758142(-)$1	1	94	125	24.6652
((((((((................)))))))	chr1:12268635-12268917(+)$1	1	6	37	22.9912
((((((((.((............)).)))))	chr19:3490879-3491193(-)$1	1	277	308	25.7648
(((...(((((...........).)))).))	chr1:205683170-205683392(-)$1	1	56	87	25.7718
((....(((((...........)))))..))	chr10:94213023-94213275(-)$1	1	152	183	24.1209
...((((((((..............))))).	chr17:40465590-40465868(-)$1	1	35	66	21.0690
..((((((((.............)).)))))	chr5:95130971-95131208(+)$1	1	105	136	23.2276
(((...((((..............))))..)	chr19:4046993-4047237(-)$1	1	141	172	24.2454
.(((((((((.............))))))))	chr2:159313542-159313821(+)$1	1	88	119	26.7590
.((((.(((((............)))))..)	chr7:128410174-128410423(+)$1	1	130	161	25.0983
((.....((((............))))...)	chrX:77382662-77382914(+)$1	1	216	247	25.0412
((((..((((.............))))..))	chr7:131174517-131174815(+)$1	1	104	135	26.0677
((((((((.((.............)).)).)	chr16:1749169-1749440(+)$1	1	216	247	22.4487
((((((.((((...........)))))))))	chr5:151190368-151190604(+)$1	1	46	77	22.9845
.((((.(((((.............))))).)	chr3:49396678-49396900(-)$1	1	30	61	24.7774
..(((((((((...........)))))))))	chr9:73002127-73002394(-)$1	1	1	32	23.2292
((((...((((............))))..))	chr20:56072418-56072659(-)$1	1	140	171	25.0776
(((((.(((((............))))))))	chr12:24970171-24970425(-)$1	1	32	63	26.4311
(((.(((((((............))))....	chr4:76569169-76569439(-)$1	1	72	103	25.4566
.(.(((.(((.............))).))).	chr17:80230784-80231022(-)$1	1	29	60	25.7768
(((((((((((............)).)))..	chr6:163989185-163989437(+)$1	1	169	200	24.9937
((((..(((((.............)))))..	chr10:51590169-51590456(+)$1	1	139	170	24.4040
(..((((((((............))))))))	chr5:137842693-137842957(-)$1	1	40	71	23.4286
..(((..(((..............))).)))	chr15:41773649-41773891(+)$1	1	204	235	24.8577
.(((...(.(((...........))).)...	chr7:129473658-129473925(-)$1	1	78	109	25.1555
.((((.(((.(.............).))).)	chr20:31172135-31172393(-)$1	1	79	110	25.5902
(...(((((((............))))))).	chr7:44252167-44252412(+)$1	1	14	45	21.2159
(((.(((((((...........)))))))..	chr16:18818898-18819164(-)$1	1	220	251	24.5722
))))))(((((............))))).))	chr15:45901253-45901478(+)$1	1	94	125	22.2133
.(((((((((.............))))))))	chr6:108532789-108533048(-)$1	1	138	169	25.7120
((....(((((...........))))))))(	chr4:89442339-89442616(-)$1	1	167	198	24.3867
.(((((.(((.............))).))))	chr5:72205098-72205373(+)$1	1	73	104	25.0421
..(((.((((..............)))))))	chr3:179342020-179342313(+)$1	1	95	126	24.8284
))))(((((((............))))))).	chr1:167511090-167511409(-)$1	1	169	200	24.2181
((((.((((((.............)))))).	chr1:218505287-218505524(+)$1	1	45	76	23.7805
(((((..((((............)))).)))	chr1:25826088-25826407(+)$1	1	22	53	24.8587
.(.(((..(((...........)))..))).	chr1:52485930-52486238(-)$1	1	8	39	24.5302
))))))).(((................))).	chr6:41903021-41903426(-)$1	1	72	103	20.4435
(((...(((((..............))))).	chr6:163988201-163988457(+)$1	1	136	167	24.1500
(((((((((((.............)))).))	chr2:70107426-70107737(+)$1	1	0	31	26.0337
.(((..((.((.............)).))..	chr3:141669779-141670024(-)$1	1	77	108	24.2767
(....((((.(..............).))))	chr6:35541739-35541985(-)$1	1	17	48	23.3623
(((((((((..............))))))).	chr7:141353268-141353513(+)$1	1	96	127	23.9121
..(((((((((...........)))))))))	chr3:48786390-48786673(-)$1	1	22	53	23.2292
((...(((((((...........))))))))	chr10:98280779-98281010(-)$1	1	29	60	24.2580
(((((((((((..............))))))	chr10:27399430-27399703(-)$1	1	169	200	25.3196
.((((.(((((.............))))).)	chr1:54692256-54692575(-)$1	1	209	240	25.4976

#PSSM
e : 0.17	[ : 0.10	c : 0.08	g : 0.08	f : 0.06	= : 0.06	: : 0.06	i : 0.06	! : 0.06	d : 0.05	h : 0.03	" : 0.03	( : 0.01	H : 0.01	+ : 0.01	$ : 0.01	F : 0.01	
e : 0.15	d : 0.13	c : 0.10	i : 0.10	= : 0.08	g : 0.08	f : 0.06	h : 0.05	! : 0.05	: : 0.05	" : 0.03	a : 0.03	( : 0.01	# : 0.01	
i : 0.13	c : 0.12	d : 0.12	e : 0.12	= : 0.08	g : 0.08	f : 0.06	h : 0.05	[ : 0.05	# : 0.05	" : 0.03	( : 0.01	$ : 0.01	! : 0.01	: : 0.01	
c : 0.13	i : 0.12	d : 0.10	= : 0.08	h : 0.08	e : 0.08	" : 0.08	g : 0.08	f : 0.06	# : 0.05	[ : 0.03	a : 0.01	$ : 0.01	: : 0.01	
c : 0.12	" : 0.12	g : 0.12	d : 0.10	i : 0.10	= : 0.08	h : 0.08	! : 0.06	# : 0.06	f : 0.03	e : 0.03	$ : 0.01	b : 0.01	[ : 0.01	
g : 0.13	! : 0.12	[ : 0.12	" : 0.10	i : 0.10	h : 0.08	= : 0.06	c : 0.06	# : 0.05	d : 0.03	f : 0.03	e : 0.03	$ : 0.01	b : 0.01	
e : 0.18	d : 0.13	i : 0.10	g : 0.10	! : 0.06	= : 0.06	h : 0.05	b : 0.05	" : 0.05	[ : 0.05	c : 0.05	f : 0.03	# : 0.01	$ : 0.01	
d : 0.27	e : 0.18	i : 0.10	c : 0.08	g : 0.08	= : 0.05	h : 0.05	b : 0.05	f : 0.03	# : 0.01	a : 0.01	! : 0.01	: : 0.01	
d : 0.27	e : 0.18	c : 0.12	[ : 0.08	g : 0.08	i : 0.06	= : 0.05	h : 0.05	b : 0.03	y : 0.01	f : 0.01	
d : 0.25	e : 0.18	c : 0.12	b : 0.10	i : 0.06	g : 0.06	= : 0.05	w : 0.03	h : 0.03	[ : 0.03	y : 0.01	f : 0.01	
e : 0.18	d : 0.15	v : 0.13	w : 0.10	c : 0.06	b : 0.06	g : 0.06	= : 0.05	a : 0.05	h : 0.03	i : 0.03	y : 0.01	f : 0.01	
v : 0.27	u : 0.24	t : 0.18	w : 0.17	y : 0.05	c : 0.03	d : 0.01	g : 0.01	
v : 0.27	t : 0.25	u : 0.24	w : 0.17	y : 0.05	
v : 0.27	t : 0.25	u : 0.24	w : 0.17	y : 0.05	
v : 0.27	t : 0.25	u : 0.24	w : 0.17	y : 0.05	
v : 0.27	t : 0.25	u : 0.24	w : 0.17	y : 0.05	
v : 0.27	t : 0.25	u : 0.24	w : 0.17	y : 0.05	
v : 0.27	t : 0.25	u : 0.24	w : 0.17	y : 0.05	
v : 0.27	t : 0.25	u : 0.24	w : 0.17	y : 0.05	
v : 0.27	t : 0.25	u : 0.24	w : 0.17	y : 0.05	
v : 0.27	t : 0.25	u : 0.24	w : 0.17	y : 0.05	
v : 0.27	t : 0.25	u : 0.24	w : 0.17	y : 0.05	
v : 0.27	u : 0.24	w : 0.17	t : 0.06	d : 0.05	y : 0.05	e : 0.05	i : 0.03	a : 0.01	g : 0.01	c : 0.01	
d : 0.17	w : 0.13	v : 0.13	e : 0.10	c : 0.08	g : 0.08	b : 0.06	i : 0.06	y : 0.05	h : 0.05	= : 0.01	] : 0.01	
d : 0.25	e : 0.15	c : 0.10	b : 0.10	i : 0.08	g : 0.08	w : 0.06	h : 0.05	y : 0.03	= : 0.01	a : 0.01	f : 0.01	
d : 0.25	e : 0.18	c : 0.08	] : 0.08	i : 0.08	g : 0.08	h : 0.05	y : 0.03	= : 0.03	b : 0.03	f : 0.01	2 : 0.01	a : 0.01	
d : 0.22	e : 0.20	i : 0.10	] : 0.10	g : 0.08	h : 0.05	c : 0.05	2 : 0.03	y : 0.03	= : 0.03	f : 0.03	b : 0.01	4 : 0.01	
e : 0.17	d : 0.12	i : 0.10	c : 0.10	g : 0.08	2 : 0.06	= : 0.06	] : 0.06	h : 0.05	b : 0.05	4 : 0.03	f : 0.03	3 : 0.01	a : 0.01	
c : 0.15	i : 0.13	e : 0.12	2 : 0.10	= : 0.08	g : 0.08	h : 0.05	d : 0.05	f : 0.05	4 : 0.03	] : 0.03	3 : 0.03	b : 0.03	: : 0.01	
i : 0.15	c : 0.12	g : 0.10	= : 0.08	e : 0.08	d : 0.06	2 : 0.06	] : 0.06	h : 0.05	4 : 0.05	f : 0.05	3 : 0.05	5 : 0.01	D : 0.01	
i : 0.15	d : 0.13	= : 0.08	e : 0.08	c : 0.05	h : 0.05	f : 0.05	g : 0.05	] : 0.05	3 : 0.05	: : 0.05	5 : 0.03	4 : 0.03	2 : 0.03	6 : 0.01	a : 0.01	b : 0.01	D : 0.01	

#score	1407.19818041598
#seq	58
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_CDS_m3_run1.txt

#BEAR
ggggggqqqqqqqqgggggg	chr19:917368-917661(+)$1	293	267	287	12.3444
gg[a[aqqqqqqqqa]a]gg	chrX:48814295-48814548(-)$1	253	189	209	12.3909
::ddddqqqqqqqqdddd:f	chr22:20073784-20074049(+)$1	265	49	69	9.0612
beeeeeqqqqqqqqeeeeee	chr3:49055820-49056130(-)$1	310	169	189	12.8369
fffffrrrrrrrrrffffff	chr6:144758714-144758980(+)$1	266	6	26	7.3557
##ddddqqqqqqqqdddd22	chr6:4032034-4032290(+)$1	256	88	108	11.7644
ffffffqqqqqqqqffffff	chr16:2580589-2580922(+)$1	333	282	302	11.6535
:eeeeerrrrrrrrreeeee	chr22:20074000-20074330(+)$1	330	87	107	7.9124
eee!!aqqqqqqqqa22eee	chr7:150935645-150935908(+)$1	263	15	35	12.2403
[a!!bbqqqqqqqqbb22ae	chr19:798434-798702(+)$1	268	216	236	12.0010
:eeeeeqqqqqqqqeeeee:	chr7:11022475-11022744(+)$1	269	220	240	11.4146
feeeeeqqqqqqqqeeeee3	chr12:62996785-62997002(+)$1	217	88	108	13.2073
:eeeeeqqqqqqqqeeeeeG	chr2:166771761-166772018(-)$1	257	220	240	11.7846
"eeeeeqqqqqqqqeeeee3	chr16:28877649-28877919(+)$1	270	216	236	13.3970
:eeeeeqqqqqqqqeeeeec	chr6:7581201-7581452(+)$1	251	123	143	12.2275
hhhhhhqqqqqqqqhhhhhh	chr6:56334845-56335176(-)$1	331	244	264	10.2224
"eeeeeqqqqqqqqeeeee]	chr10:120802012-120802296(-)$1	284	197	217	13.3524
eeeeeassssssssssa]ee	chr4:1804673-1804902(+)$1	229	54	74	7.7982
ii!!bbqqqqqqqqbb22ii	chrX:53581753-53581989(-)$1	236	50	70	12.0765
ddddddqqqqqqqqdddd88	chr9:116984402-116984634(+)$1	232	20	40	10.7691
ffffffqqqqqqqqffffff	chr12:62997004-62997266(+)$1	262	220	240	11.6535
!!a[bbqqqqqqqqbb333a	chr22:20073541-20073768(+)$1	227	197	217	12.4144
ddddbbqqqqqqqqbb]ddd	chr3:49050843-49051138(+)$1	295	269	289	11.4551
eeeeerrrrrrrrreeeee]	chr14:24901507-24901777(+)$1	270	150	170	8.7716
!bbcccrrrrrrrrrccc]b	chr1:1284336-1284625(-)$1	289	184	204	7.3318
ddddcccrrrrrrrrrccc]	chr3:50103764-50104027(+)$1	263	131	151	6.7661
"""cccqqqqqqqqccc22c	chr3:49050193-49050494(+)$1	301	65	85	11.9754
"ddddrrrrrrrrrdddd33	chr16:28878142-28878383(+)$1	241	12	32	7.9388
feeeeeqqqqqqqqeeeee3	chr12:62996849-62997072(+)$1	223	24	44	13.2073
bb[cccssssssssssccc]	chr16:30205863-30206161(+)$1	298	245	265	7.3337
f!!cccssssssssssccc2	chr2:242591218-242591472(+)$1	254	149	169	7.5695
ffffffqqqqqqqqffffff	chr17:8108125-8108364(-)$1	239	135	155	11.6535
ggggggqqqqqqqqgggggg	chr22:20073745-20073984(+)$1	239	210	230	12.3444
cc!!bbqqqqqqqqbbccc2	chr17:36760601-36760863(-)$1	262	45	65	12.2563
ggg[bbqqqqqqqqbb]ggg	chr8:103424328-103424631(-)$1	303	220	240	12.4132
hhh[bbqqqqqqqqbb]hhh	chr2:231902493-231902754(+)$1	261	191	211	11.2543

#otherMatches

#Seq PSSM
UGCCGCUCUUCUUCGCGGCG	chr19:917368-917661(+)$1	293	267	287	12.3444
UGGCGCGGUUGGCGGGGGCA	chrX:48814295-48814548(-)$1	253	189	209	12.3909
GGAUGUAAAGAUUAGCGUGA	chr22:20073784-20074049(+)$1	265	49	69	9.0612
GGGGCCCUCAACGCGGCCCU	chr3:49055820-49056130(-)$1	310	169	189	12.8369
UGCACACCAGAGCAGUGUGG	chr6:144758714-144758980(+)$1	266	6	26	7.3557
AAUGGAAGGAAAGGUCCAGU	chr6:4032034-4032290(+)$1	256	88	108	11.7644
GCAGGGAUACCCACCUCUGC	chr16:2580589-2580922(+)$1	333	282	302	11.6535
AGUUAGAAGAUUUUACUGAC	chr22:20074000-20074330(+)$1	330	87	107	7.9124
GUGAAGAACUCUACCACCGC	chr7:150935645-150935908(+)$1	263	15	35	12.2403
GCUGCCCUUCCGACGGACGC	chr19:798434-798702(+)$1	268	216	236	12.0010
GAAGAAGAGUAAAGUUCUUA	chr7:11022475-11022744(+)$1	269	220	240	11.4146
CCGGCGAUUAUCGGCGCCGA	chr12:62996785-62997002(+)$1	217	88	108	13.2073
AGCCUUAUUUUAUAGAGGCC	chr2:166771761-166772018(-)$1	257	220	240	11.7846
AAGCGCUUUUCCCUGCGUUC	chr16:28877649-28877919(+)$1	270	216	236	13.3970
GCAGCAGAGGGACGUGCUGG	chr6:7581201-7581452(+)$1	251	123	143	12.2275
AGAUGAGGUACUCAUUAUCU	chr6:56334845-56335176(-)$1	331	244	264	10.2224
CUCGUCGUGGGGCAGACGAU	chr10:120802012-120802296(-)$1	284	197	217	13.3524
GCCACCAAUUUCAUAGGCGU	chr4:1804673-1804902(+)$1	229	54	74	7.7982
CUCCCCUCAUCAUUGGCUGG	chrX:53581753-53581989(-)$1	236	50	70	12.0765
CUGUGUGGAGGAUGACAUGG	chr9:116984402-116984634(+)$1	232	20	40	10.7691
GUACAGAACGCCGGCUGUAU	chr12:62997004-62997266(+)$1	262	220	240	11.6535
CUCCUCAUAGACCCGAACUG	chr22:20073541-20073768(+)$1	227	197	217	12.4144
GGGCCUGAAUAUGGAGUGCC	chr3:49050843-49051138(+)$1	295	269	289	11.4551
GCCUCAAUGGAAACGAGGCG	chr14:24901507-24901777(+)$1	270	150	170	8.7716
CGGAGACCAAGAUUAUCUAC	chr1:1284336-1284625(-)$1	289	184	204	7.3318
AGUUCUGAUCAAACACCAGC	chr3:50103764-50104027(+)$1	263	131	151	6.7661
AGACCCUGUUUCCUGGGAAG	chr3:49050193-49050494(+)$1	301	65	85	11.9754
UGCAGAGGGAAGAGCUGCUG	chr16:28878142-28878383(+)$1	241	12	32	7.9388
CCGGCGAUUAUCGGCGCCGA	chr12:62996849-62997072(+)$1	223	24	44	13.2073
UCGGGUAAGGAAGGAGACCG	chr16:30205863-30206161(+)$1	298	245	265	7.3337
CGGCGGAGAACUGAGGCCGG	chr2:242591218-242591472(+)$1	254	149	169	7.5695
GGAGGGUGCUGCCUCCCUCU	chr17:8108125-8108364(-)$1	239	135	155	11.6535
GGGACGUGCAUGCUUGUCCC	chr22:20073745-20073984(+)$1	239	210	230	12.3444
CCUGGUGGGAGAGGACGGCG	chr17:36760601-36760863(-)$1	262	45	65	12.2563
CUCAAUGACAGGUAAUAGGG	chr8:103424328-103424631(-)$1	303	220	240	12.4132
gcggcgggccggggcggcgc	chr2:231902493-231902754(+)$1	261	191	211	11.2543

#DB
((((((........))))))	chr19:917368-917661(+)$1	1	267	287	12.3444
((.(.(........).).))	chrX:48814295-48814548(-)$1	1	189	209	12.3909
..((((........)))).(	chr22:20073784-20074049(+)$1	1	49	69	9.0612
)(((((........)))))(	chr3:49055820-49056130(-)$1	1	169	189	12.8369
(((((.........))))))	chr6:144758714-144758980(+)$1	1	6	26	7.3557
..((((........))))..	chr6:4032034-4032290(+)$1	1	88	108	11.7644
((((((........))))))	chr16:2580589-2580922(+)$1	1	282	302	11.6535
.(((((.........)))))	chr22:20074000-20074330(+)$1	1	87	107	7.9124
(((..(........)..)))	chr7:150935645-150935908(+)$1	1	15	35	12.2403
.(..((........))..))	chr19:798434-798702(+)$1	1	216	236	12.0010
.(((((........))))).	chr7:11022475-11022744(+)$1	1	220	240	11.4146
((((((........))))).	chr12:62996785-62997002(+)$1	1	88	108	13.2073
.(((((........))))))	chr2:166771761-166772018(-)$1	1	220	240	11.7846
.(((((........))))).	chr16:28877649-28877919(+)$1	1	216	236	13.3970
.(((((........)))))(	chr6:7581201-7581452(+)$1	1	123	143	12.2275
((((((........))))))	chr6:56334845-56335176(-)$1	1	244	264	10.2224
.(((((........))))).	chr10:120802012-120802296(-)$1	1	197	217	13.3524
((((((..........).))	chr4:1804673-1804902(+)$1	1	54	74	7.7982
((..((........))..))	chrX:53581753-53581989(-)$1	1	50	70	12.0765
((((((........))))..	chr9:116984402-116984634(+)$1	1	20	40	10.7691
((((((........))))))	chr12:62997004-62997266(+)$1	1	220	240	11.6535
..(.((........))...)	chr22:20073541-20073768(+)$1	1	197	217	12.4144
((((((........)).)))	chr3:49050843-49051138(+)$1	1	269	289	11.4551
(((((.........))))).	chr14:24901507-24901777(+)$1	1	150	170	8.7716
.(((((.........))).)	chr1:1284336-1284625(-)$1	1	184	204	7.3318
(((((((.........))).	chr3:50103764-50104027(+)$1	1	131	151	6.7661
...(((........)))..)	chr3:49050193-49050494(+)$1	1	65	85	11.9754
.((((.........))))..	chr16:28878142-28878383(+)$1	1	12	32	7.9388
((((((........))))).	chr12:62996849-62997072(+)$1	1	24	44	13.2073
((.(((..........))).	chr16:30205863-30206161(+)$1	1	245	265	7.3337
(..(((..........))).	chr2:242591218-242591472(+)$1	1	149	169	7.5695
((((((........))))))	chr17:8108125-8108364(-)$1	1	135	155	11.6535
((((((........))))))	chr22:20073745-20073984(+)$1	1	210	230	12.3444
((..((........))))).	chr17:36760601-36760863(-)$1	1	45	65	12.2563
(((.((........)).)))	chr8:103424328-103424631(-)$1	1	220	240	12.4132
(((.((........)).)))	chr2:231902493-231902754(+)$1	1	191	211	11.2543

#PSSM
f : 0.19	: : 0.13	g : 0.11	" : 0.11	e : 0.08	d : 0.08	b : 0.05	h : 0.05	! : 0.05	# : 0.02	[ : 0.02	i : 0.02	c : 0.02	
e : 0.33	g : 0.11	f : 0.11	d : 0.11	h : 0.05	! : 0.05	b : 0.05	: : 0.02	# : 0.02	a : 0.02	i : 0.02	" : 0.02	c : 0.02	
e : 0.33	d : 0.16	f : 0.11	! : 0.11	g : 0.08	[ : 0.05	h : 0.05	a : 0.02	b : 0.02	" : 0.02	
e : 0.30	d : 0.16	f : 0.11	! : 0.11	c : 0.11	[ : 0.08	g : 0.05	a : 0.02	h : 0.02	
e : 0.30	b : 0.19	c : 0.13	d : 0.11	f : 0.11	g : 0.05	[ : 0.02	! : 0.02	h : 0.02	
e : 0.25	b : 0.19	c : 0.13	a : 0.08	d : 0.08	r : 0.08	f : 0.08	g : 0.05	h : 0.02	
q : 0.75	r : 0.13	s : 0.08	c : 0.02	
q : 0.75	r : 0.16	s : 0.08	
q : 0.75	r : 0.16	s : 0.08	
q : 0.75	r : 0.16	s : 0.08	
q : 0.75	r : 0.16	s : 0.08	
q : 0.75	r : 0.16	s : 0.08	
q : 0.75	r : 0.16	s : 0.08	
q : 0.75	r : 0.16	s : 0.08	
e : 0.25	b : 0.19	d : 0.11	f : 0.11	r : 0.08	s : 0.08	g : 0.05	a : 0.05	h : 0.02	c : 0.02	
e : 0.27	b : 0.19	d : 0.11	f : 0.11	s : 0.08	g : 0.05	c : 0.05	] : 0.02	2 : 0.02	h : 0.02	r : 0.02	
e : 0.27	c : 0.16	d : 0.11	f : 0.11	2 : 0.08	] : 0.08	g : 0.05	a : 0.05	h : 0.02	3 : 0.02	
e : 0.30	d : 0.13	c : 0.13	f : 0.11	g : 0.08	2 : 0.08	] : 0.05	h : 0.05	3 : 0.02	
e : 0.33	g : 0.11	f : 0.11	c : 0.11	2 : 0.05	h : 0.05	3 : 0.05	: : 0.02	a : 0.02	i : 0.02	8 : 0.02	d : 0.02	] : 0.02	
f : 0.13	e : 0.13	g : 0.11	3 : 0.11	] : 0.11	2 : 0.08	c : 0.05	h : 0.05	: : 0.02	G : 0.02	i : 0.02	8 : 0.02	a : 0.02	d : 0.02	b : 0.02	

#score	392.1509632731473
#seq	36
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF322GPD_SF3B1_UTR_m3_run1.txt

#BEAR
ffffffqqqqqqqqffffff:ffffffnnnnnffffff::	chr11:62609109-62609352(-)$1	243	117	157	39.9540

#otherMatches

#Seq PSSM
uaucaguuuaauaucugauacguccucuauccgaggacaa	chr11:62609109-62609352(-)$1	243	117	157	39.9540

#DB
((((((........)))))).((((((.....))))))..	chr11:62609109-62609352(-)$1	1	117	157	39.9540

#PSSM
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
: : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
: : 1.00	
: : 1.00	

#score	39.95409389639998
#seq	1
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_transcript_m3_run2.txt

#BEAR
eddddvvvvvvvvvvvvvdddd::	chr9:139726707-139726924(+)$1	217	190	214	20.9635
dd[ccctttttttttttccc]ddd	chr17:80041847-80042070(-)$1	223	81	105	22.2559
:cccvvvvvvvvvvvvvccc:ccc	chr19:40883596-40883858(+)$1	262	127	151	20.7068
hhhhhuuuuuuuuuuuuhhhhhhh	chr2:98272483-98272779(-)$1	296	197	221	21.1716
ddddyyyyyyyyyyyyyyyydddd	chr14:69341324-69341627(-)$1	303	243	267	20.2271
eeeeeuuuuuuuuuuuueeeee33	chr16:30079866-30080072(+)$1	206	77	101	23.8668
d"""bbtttttttttttbb333dd	chr19:13265316-13265558(+)$1	242	72	96	20.9774
fffffuuuuuuuuuuuuffffffC	chr1:149858680-149858975(+)$1	295	136	160	21.7356
eeeeeuuuuuuuuuuuueeeeedd	chrX:47060789-47061032(+)$1	243	175	199	23.3095
fffffftttttttttttffffff:	chr4:109543070-109543280(+)$1	210	114	138	20.7990
[ddddvvvvvvvvvvvvvdddd33	chr1:1685397-1685676(-)$1	279	78	102	22.9390
ggggguuuuuuuuuuuuggggggg	chr1:116935431-116935669(+)$1	238	12	36	23.4818
eeeeeuuuuuuuuuuuueeeee::	chr1:186308747-186308998(-)$1	251	222	246	21.9499
eeeevvvvvvvvvvvvveeeee33	chr7:135304133-135304383(+)$1	250	128	152	23.2587
ee[bbvvvvvvvvvvvvvbb]eee	chr3:53263235-53263494(-)$1	259	226	250	22.1212
eee[bbtttttttttttbb]eeee	chrX:152953963-152954240(+)$1	277	4	28	21.7329
e[cccuuuuuuuuuuuuccc22ee	chr19:50296146-50296386(+)$1	240	156	180	23.0860
hhhhhuuuuuuuuuuuuhhhhhhh	chr12:124911219-124911447(-)$1	228	3	27	21.1716
=====wwwwwwwwwwwwww=====	chr7:150644431-150644673(-)$1	242	82	106	21.6692
))ccctttttttttttcccccc]a	chr1:19447603-19447886(-)$1	283	93	117	21.4532
fdddduuuuuuuuuuuudddd>>>	chr16:29705973-29706211(+)$1	238	163	187	22.5944
gggggvvvvvvvvvvvvvgggggg	chr6:27101134-27101404(+)$1	270	211	235	22.9522
fffffvvvvvvvvvvvvvffffff	chr3:53263001-53263254(-)$1	253	62	86	21.9812
c[ccctttttttttttcccccc22	chr7:127732453-127732688(+)$1	235	76	100	22.3949
!!cccuuuuuuuuuuuucccdddd	chr16:30081477-30081684(+)$1	207	73	97	23.4008
eeeyyyyyyyyyyyyyyyyeeeee	chr12:124818939-124819194(-)$1	255	93	117	21.0191
cccyyyyyyyyyyyyyyyyccc77	chrX:69385650-69385904(+)$1	254	31	55	20.1029
ggggggtttttttttttggggggg	chr16:29675115-29675503(+)$1	388	132	156	22.2290
======ttttttttttt=======	chr16:29818582-29818857(+)$1	275	193	217	22.3922
======ttttttttttt=======	chr19:58904345-58904598(+)$1	253	93	117	22.3922
[eeeeettttttttttteeeee]e	chr19:49990768-49991001(+)$1	233	174	198	22.4738
ffcccuuuuuuuuuuuuccc]fff	chr7:128480550-128480826(+)$1	276	122	146	23.1968
cccyyyyyyyyyyyyyyyyccc22	chr19:3054017-3054259(-)$1	242	198	222	20.9182
##cccuuuuuuuuuuuuccccccb	chr12:53860904-53861140(+)$1	236	130	154	23.1088
fffwwwwwwwwwwwwwwffffffc	chr19:2755076-2755344(-)$1	268	131	155	20.8249
eeeeewwwwwwwwwwwwwweeeee	chr22:50898703-50898937(-)$1	234	117	141	21.4617
eeeeeuuuuuuuuuuuueeeee::	chr8:145065313-145065558(+)$1	245	192	216	21.9499
!!ddddtttttttttttdddd22b	chr17:80559260-80559557(+)$1	297	213	237	21.5706
gg[bbyyyyyyyyyyyyyyyybb]	chr9:133760025-133760269(+)$1	244	199	223	19.6374
fffffuuuuuuuuuuuuffffff:	chr20:34143722-34144001(+)$1	279	129	153	21.9469
cc[bbtttttttttttbb]ccc22	chrX:153583109-153583325(-)$1	216	14	38	21.5057
:ddddwwwwwwwwwwwwwwdddd:	chr8:144661815-144662101(-)$1	286	261	285	19.3459
ggggggtttttttttttggggggg	chr17:79478113-79478324(-)$1	211	37	61	22.2290
eeewwwwwwwwwwwwwweeeee66	chr3:10347141-10347370(-)$1	229	42	66	21.0041
hhhhhuuuuuuuuuuuuhhhhhhh	chr1:116935374-116935625(+)$1	251	69	93	21.1716
ee[bbtttttttttttbbeeeee]	chr2:127453771-127454047(+)$1	276	235	259	21.8968
d!!bbvvvvvvvvvvvvvbb22dd	chr12:6635354-6635632(+)$1	278	110	134	21.4454
dddccctttttttttttccc22dd	chr6:31608569-31608807(-)$1	238	24	48	21.8235
fffffftttttttttttffffffF	chr8:144899147-144899418(-)$1	271	191	215	21.1030
fffwwwwwwwwwwwwwwffffff]	chr19:3578690-3578934(+)$1	244	171	195	20.9431
gggggtttttttttttggggggg]	chr6:30691223-30691463(+)$1	240	185	209	22.0887
[eeeeettttttttttteeeee]c	chr20:62659734-62659952(+)$1	218	6	30	22.5632
[dddduuuuuuuuuuuudddd22e	chr12:113598974-113599238(-)$1	264	215	239	22.8334
cc[bbuuuuuuuuuuuubb]cccD	chr1:20980068-20980350(-)$1	282	97	121	21.8277
gggggtttttttttttggggggg>	chr2:70315368-70315585(+)$1	217	16	40	21.9605
eeewwwwwwwwwwwwwweeeeegg	chr10:70742849-70743080(+)$1	231	28	52	21.6266
[dddduuuuuuuuuuuuddddddd	chr15:89444681-89444994(-)$1	313	87	111	22.8358
[ddddvvvvvvvvvvvvvdddd22	chr6:34212952-34213180(+)$1	228	175	199	22.6087
eeeeettttttttttteeeee444	chr13:27830344-27830571(+)$1	227	46	70	22.1672
ddddwwwwwwwwwwwwwwdddd]b	chr2:96949998-96950229(-)$1	231	115	139	21.2847
[ddddtttttttttttddddccc]	chr12:125396151-125396416(-)$1	265	186	210	21.7764
ggggguuuuuuuuuuuuggggggg	chrX:153585729-153585981(-)$1	252	84	108	23.4818
ffffwwwwwwwwwwwwwwffffff	chr17:41170700-41170917(-)$1	217	109	133	20.9697
ddddwwwwwwwwwwwwwwdddd]c	chr16:2012517-2012758(-)$1	241	80	104	21.4710
eeeeeuuuuuuuuuuuueeeeeii	chrX:118603686-118603946(+)$1	260	100	124	23.4812
b[bbvvvvvvvvvvvvvbb]bb44	chr22:23524150-23524432(+)$1	282	61	85	21.1172
eeewwwwwwwwwwwwwweeeee22	chr16:29822010-29822247(+)$1	237	201	225	21.6520

#otherMatches

#Seq PSSM
GUCUCCCUCCUAACCCCUGAGAAA	chr9:139726707-139726924(+)$1	217	190	214	20.9635
ACGGCCUACUACGCGCUGGUGGUG	chr17:80041847-80042070(-)$1	223	81	105	22.2559
AGGCUCGAAUCCCAUAUGCCCGUG	chr19:40883596-40883858(+)$1	262	127	151	20.7068
UGGGGGACAUUUUCUUACCUCACC	chr2:98272483-98272779(-)$1	296	197	221	21.1716
AGUUACGUUAAAAACCAAAAAACU	chr14:69341324-69341627(-)$1	303	243	267	20.2271
UGUUGUUACCCUGACCCCAACAGG	chr16:30079866-30080072(+)$1	206	77	101	23.8668
UCAAGUUUUUCUCAUCUGCAUUAG	chr19:13265316-13265558(+)$1	242	72	96	20.9774
UGGGCAAAGUCACCAUCGCCCAGG	chr1:149858680-149858975(+)$1	295	136	160	21.7356
UGGUUGAACUCAACGGAAAUCAGC	chrX:47060789-47061032(+)$1	243	175	199	23.3095
GUAUUUCUGAAAAUUUUAAGUAUA	chr4:109543070-109543280(+)$1	210	114	138	20.7990
CGGGGCCUCCAUGAUCCACCCCAA	chr1:1685397-1685676(-)$1	279	78	102	22.9390
AGAUAAUUUACAGAUGAUGUCUCU	chr1:116935431-116935669(+)$1	238	12	36	23.4818
AAGGUAUAUGGAAAGAAGCCUUAA	chr1:186308747-186308998(-)$1	251	222	246	21.9499
CUGAACAGAAGGAAACAUCAGUCU	chr7:135304133-135304383(+)$1	250	128	152	23.2587
GGAGCUCCCUUGACUUUUGCACCA	chr3:53263235-53263494(-)$1	259	226	250	22.1212
ccugaccgccgcccccCGUGAggc	chrX:152953963-152954240(+)$1	277	4	28	21.7329
AUGACUUCAAGACGUGCGUCUCUC	chr19:50296146-50296386(+)$1	240	156	180	23.0860
GCAGACCAUCCGUCCCCUCUGUGU	chr12:124911219-124911447(-)$1	228	3	27	21.1716
GGAGUGUCCAACAUUUUCAGCUUC	chr7:150644431-150644673(-)$1	242	82	106	21.6692
GUGCUUCUUCCUCCUCAGCCCCUG	chr1:19447603-19447886(-)$1	283	93	117	21.4532
GGGCAGCCUUUCUUCGAUGCCAUA	chr16:29705973-29706211(+)$1	238	163	187	22.5944
CAUGUGAAAGAAAGUGAGACAUGG	chr6:27101134-27101404(+)$1	270	211	235	22.9522
GGGGUCUUAUUUCUGCAUAUCCUU	chr3:53263001-53263254(-)$1	253	62	86	21.9812
GUGAUUUUUCUGAUACGUCCAUUC	chr7:127732453-127732688(+)$1	235	76	100	22.3949
CUGCCCCCAACACUCCAGGCCCUG	chr16:30081477-30081684(+)$1	207	73	97	23.4008
CCCCCUCUACUCCUUCCCUGGGGC	chr12:124818939-124819194(-)$1	255	93	117	21.0191
GAGGAAUUCAGAAAAGCAGCUCAG	chrX:69385650-69385904(+)$1	254	31	55	20.1029
CCCUCAACUUCCAUCAAUGAGGGA	chr16:29675115-29675503(+)$1	388	132	156	22.2290
GCUAUGAAGAUGCCGACCAUGGUG	chr16:29818582-29818857(+)$1	275	193	217	22.3922
GUGGAGCGCCUCACUAACUCCAUG	chr19:58904345-58904598(+)$1	253	93	117	22.3922
GGAUCCAGGCCGGAAUGGGGUCGC	chr19:49990768-49991001(+)$1	233	174	198	22.4738
GUGCCUGGGAAGUAUGUGGUGACC	chr7:128480550-128480826(+)$1	276	122	146	23.1968
UGUUCCCCUCCCCCGCCCUGCAGC	chr19:3054017-3054259(-)$1	242	198	222	20.9182
CAGUCUCAUUUUCCCAUGACGCAU	chr12:53860904-53861140(+)$1	236	130	154	23.1088
GCGACAUCAUGACCUUCUGUCCCG	chr19:2755076-2755344(-)$1	268	131	155	20.8249
UGGUCAAGAACGCCAAGAAGACCA	chr22:50898703-50898937(-)$1	234	117	141	21.4617
GGGGCCCCUUACCCACAGCCCCCU	chr8:145065313-145065558(+)$1	245	192	216	21.9499
ACUUCACCUCUCAGCACUGAAAAC	chr17:80559260-80559557(+)$1	297	213	237	21.5706
CCAGUGACCCCCACCAGCAAAGCA	chr9:133760025-133760269(+)$1	244	199	223	19.6374
CCAGGCAUUGUGAACCCCCUGGAC	chr20:34143722-34144001(+)$1	279	129	153	21.9469
UGGUGGAGAAUGAGGACGGCACUU	chrX:153583109-153583325(-)$1	216	14	38	21.5057
UCAGCCCCAUCUCUGCCCUGCUGU	chr8:144661815-144662101(-)$1	286	261	285	19.3459
CGAUGGCCAGGUCAUCACCAUUGG	chr17:79478113-79478324(-)$1	211	37	61	22.2290
CUCAUAGACCACCCAUCGGGGCAG	chr3:10347141-10347370(-)$1	229	42	66	21.0041
AGAUAAUUUACAGAUGAUGUCUCU	chr1:116935374-116935625(+)$1	251	69	93	21.1716
UGCAGGACAACAUCAGCUCACUGG	chr2:127453771-127454047(+)$1	276	235	259	21.8968
AAACGUCACCCCCCCUUCCGGCUG	chr12:6635354-6635632(+)$1	278	110	134	21.4454
CCUGGAUCUAAUCUAUUUCUAAAG	chr6:31608569-31608807(-)$1	238	24	48	21.8235
UCUCCUGGAGCCCAAGAAGGAGAA	chr8:144899147-144899418(-)$1	271	191	215	21.1030
CCCAAAUUACUCACUACGGGGGGC	chr19:3578690-3578934(+)$1	244	171	195	20.9431
UCAGUUGGUAGAGAAUACUGAUGA	chr6:30691223-30691463(+)$1	240	185	209	22.0887
AGAGCCCUUUCAGACAAGGCUUCC	chr20:62659734-62659952(+)$1	218	6	30	22.5632
GUCAGAUUAGGGUAACGCUGAGGC	chr12:113598974-113599238(-)$1	264	215	239	22.8334
GCAACUAUGAACUAGCUGUGGCCC	chr1:20980068-20980350(-)$1	282	97	121	21.8277
CUCCCAGUCUCCGCAAGGGAGAGU	chr2:70315368-70315585(+)$1	217	16	40	21.9605
AGUUCACCUGUCUUUAUACUCAAA	chr10:70742849-70743080(+)$1	231	28	52	21.6266
UCCAGCAGCUACAAGACCUGGGGC	chr15:89444681-89444994(-)$1	313	87	111	22.8358
UGGCACGCCCUACUCCACUGCCCU	chr6:34212952-34213180(+)$1	228	175	199	22.6087
UUCCUGAAACGUGUGAAGGAAAAU	chr13:27830344-27830571(+)$1	227	46	70	22.1672
UAUCGGGGGCGAGAAUGGGGUAUG	chr2:96949998-96950229(-)$1	231	115	139	21.2847
CAUUGCACUUUCCUUUCAAUAAAG	chr12:125396151-125396416(-)$1	265	186	210	21.7764
CCAUCCUCAUCAAGUACGGUGGUG	chrX:153585729-153585981(-)$1	252	84	108	23.4818
CCGGGUGAUGGUGUUGAACCGGUC	chr17:41170700-41170917(-)$1	217	109	133	20.9697
CCUGACUCCUUCCCUCACCAGGUG	chr16:2012517-2012758(-)$1	241	80	104	21.4710
AAGAUAAAUACAAGCAGAUCUUCC	chrX:118603686-118603946(+)$1	260	100	124	23.4812
AAGCCCCACCACCUACCGCAUGUU	chr22:23524150-23524432(+)$1	282	61	85	21.1172
GGCAGAGAAGAGAUGGAGUCUUAG	chr16:29822010-29822247(+)$1	237	201	225	21.6520

#DB
)((((.............))))..	chr9:139726707-139726924(+)$1	1	190	214	20.9635
((.(((...........))).)))	chr17:80041847-80042070(-)$1	1	81	105	22.2559
.(((.............))).(((	chr19:40883596-40883858(+)$1	1	127	151	20.7068
(((((............)))))))	chr2:98272483-98272779(-)$1	1	197	221	21.1716
((((................))))	chr14:69341324-69341627(-)$1	1	243	267	20.2271
(((((............)))))..	chr16:30079866-30080072(+)$1	1	77	101	23.8668
(...((...........))...))	chr19:13265316-13265558(+)$1	1	72	96	20.9774
(((((............))))))(	chr1:149858680-149858975(+)$1	1	136	160	21.7356
(((((............)))))))	chrX:47060789-47061032(+)$1	1	175	199	23.3095
((((((...........)))))).	chr4:109543070-109543280(+)$1	1	114	138	20.7990
.((((.............))))..	chr1:1685397-1685676(-)$1	1	78	102	22.9390
(((((............)))))))	chr1:116935431-116935669(+)$1	1	12	36	23.4818
(((((............)))))..	chr1:186308747-186308998(-)$1	1	222	246	21.9499
((((.............)))))..	chr7:135304133-135304383(+)$1	1	128	152	23.2587
((.((.............)).)))	chr3:53263235-53263494(-)$1	1	226	250	22.1212
(((.((...........)).))))	chrX:152953963-152954240(+)$1	1	4	28	21.7329
(.(((............)))..))	chr19:50296146-50296386(+)$1	1	156	180	23.0860
(((((............)))))))	chr12:124911219-124911447(-)$1	1	3	27	21.1716
(((((..............)))))	chr7:150644431-150644673(-)$1	1	82	106	21.6692
..(((...........)))))).)	chr1:19447603-19447886(-)$1	1	93	117	21.4532
(((((............))))...	chr16:29705973-29706211(+)$1	1	163	187	22.5944
(((((.............))))))	chr6:27101134-27101404(+)$1	1	211	235	22.9522
(((((.............))))))	chr3:53263001-53263254(-)$1	1	62	86	21.9812
(.(((...........))))))..	chr7:127732453-127732688(+)$1	1	76	100	22.3949
..(((............)))))))	chr16:30081477-30081684(+)$1	1	73	97	23.4008
(((................)))))	chr12:124818939-124819194(-)$1	1	93	117	21.0191
(((................)))..	chrX:69385650-69385904(+)$1	1	31	55	20.1029
((((((...........)))))))	chr16:29675115-29675503(+)$1	1	132	156	22.2290
((((((...........)))))))	chr16:29818582-29818857(+)$1	1	193	217	22.3922
((((((...........)))))))	chr19:58904345-58904598(+)$1	1	93	117	22.3922
.(((((...........))))).)	chr19:49990768-49991001(+)$1	1	174	198	22.4738
(((((............))).)))	chr7:128480550-128480826(+)$1	1	122	146	23.1968
(((................)))..	chr19:3054017-3054259(-)$1	1	198	222	20.9182
..(((............)))))))	chr12:53860904-53861140(+)$1	1	130	154	23.1088
(((..............)))))))	chr19:2755076-2755344(-)$1	1	131	155	20.8249
(((((..............)))))	chr22:50898703-50898937(-)$1	1	117	141	21.4617
(((((............)))))..	chr8:145065313-145065558(+)$1	1	192	216	21.9499
..((((...........))))..)	chr17:80559260-80559557(+)$1	1	213	237	21.5706
((.((................)).	chr9:133760025-133760269(+)$1	1	199	223	19.6374
(((((............)))))).	chr20:34143722-34144001(+)$1	1	129	153	21.9469
((.((...........)).)))..	chrX:153583109-153583325(-)$1	1	14	38	21.5057
.((((..............)))).	chr8:144661815-144662101(-)$1	1	261	285	19.3459
((((((...........)))))))	chr17:79478113-79478324(-)$1	1	37	61	22.2290
(((..............)))))..	chr3:10347141-10347370(-)$1	1	42	66	21.0041
(((((............)))))))	chr1:116935374-116935625(+)$1	1	69	93	21.1716
((.((...........))))))).	chr2:127453771-127454047(+)$1	1	235	259	21.8968
(..((.............))..))	chr12:6635354-6635632(+)$1	1	110	134	21.4454
((((((...........)))..))	chr6:31608569-31608807(-)$1	1	24	48	21.8235
((((((...........)))))))	chr8:144899147-144899418(-)$1	1	191	215	21.1030
(((..............)))))).	chr19:3578690-3578934(+)$1	1	171	195	20.9431
(((((...........))))))).	chr6:30691223-30691463(+)$1	1	185	209	22.0887
.(((((...........))))).)	chr20:62659734-62659952(+)$1	1	6	30	22.5632
.((((............))))..)	chr12:113598974-113599238(-)$1	1	215	239	22.8334
((.((............)).)))(	chr1:20980068-20980350(-)$1	1	97	121	21.8277
(((((...........))))))).	chr2:70315368-70315585(+)$1	1	16	40	21.9605
(((..............)))))))	chr10:70742849-70743080(+)$1	1	28	52	21.6266
.((((............)))))))	chr15:89444681-89444994(-)$1	1	87	111	22.8358
.((((.............))))..	chr6:34212952-34213180(+)$1	1	175	199	22.6087
(((((...........)))))...	chr13:27830344-27830571(+)$1	1	46	70	22.1672
((((..............)))).)	chr2:96949998-96950229(-)$1	1	115	139	21.2847
.((((...........))))))).	chr12:125396151-125396416(-)$1	1	186	210	21.7764
(((((............)))))))	chrX:153585729-153585981(-)$1	1	84	108	23.4818
((((..............))))))	chr17:41170700-41170917(-)$1	1	109	133	20.9697
((((..............)))).)	chr16:2012517-2012758(-)$1	1	80	104	21.4710
(((((............)))))))	chrX:118603686-118603946(+)$1	1	100	124	23.4812
(.((.............)).))..	chr22:23524150-23524432(+)$1	1	61	85	21.1172
(((..............)))))..	chr16:29822010-29822247(+)$1	1	201	225	21.6520

#PSSM
e : 0.25	f : 0.14	g : 0.11	d : 0.10	[ : 0.10	c : 0.07	h : 0.04	= : 0.04	: : 0.02	! : 0.02	) : 0.01	# : 0.01	b : 0.01	
e : 0.25	d : 0.19	f : 0.13	g : 0.11	c : 0.07	h : 0.04	[ : 0.04	= : 0.04	! : 0.04	" : 0.01	) : 0.01	# : 0.01	
e : 0.22	d : 0.19	c : 0.13	f : 0.11	g : 0.10	[ : 0.08	h : 0.04	= : 0.04	" : 0.01	! : 0.01	b : 0.01	
d : 0.17	e : 0.14	c : 0.13	g : 0.10	b : 0.10	f : 0.08	w : 0.07	h : 0.04	= : 0.04	y : 0.04	" : 0.01	[ : 0.01	
d : 0.13	e : 0.13	c : 0.11	b : 0.11	w : 0.11	g : 0.10	f : 0.07	y : 0.05	v : 0.04	h : 0.04	= : 0.04	
u : 0.29	w : 0.16	v : 0.14	t : 0.11	y : 0.07	c : 0.02	b : 0.02	f : 0.02	g : 0.02	= : 0.02	e : 0.02	d : 0.01	
t : 0.31	u : 0.29	w : 0.16	v : 0.14	y : 0.07	
t : 0.31	u : 0.29	w : 0.16	v : 0.14	y : 0.07	
t : 0.31	u : 0.29	w : 0.16	v : 0.14	y : 0.07	
t : 0.31	u : 0.29	w : 0.16	v : 0.14	y : 0.07	
t : 0.31	u : 0.29	w : 0.16	v : 0.14	y : 0.07	
t : 0.31	u : 0.29	w : 0.16	v : 0.14	y : 0.07	
t : 0.31	u : 0.29	w : 0.16	v : 0.14	y : 0.07	
t : 0.31	u : 0.29	w : 0.16	v : 0.14	y : 0.07	
t : 0.31	u : 0.29	w : 0.16	v : 0.14	y : 0.07	
t : 0.31	u : 0.29	w : 0.16	v : 0.14	y : 0.07	
u : 0.29	t : 0.19	w : 0.16	v : 0.14	y : 0.07	c : 0.02	b : 0.02	g : 0.02	e : 0.01	d : 0.01	
e : 0.17	c : 0.13	v : 0.10	b : 0.08	f : 0.08	g : 0.08	w : 0.08	y : 0.07	d : 0.07	h : 0.04	= : 0.02	
e : 0.19	d : 0.14	c : 0.13	f : 0.11	g : 0.10	b : 0.08	y : 0.07	h : 0.04	w : 0.04	= : 0.02	] : 0.01	
e : 0.22	c : 0.17	d : 0.16	f : 0.11	g : 0.10	h : 0.04	] : 0.04	= : 0.04	y : 0.02	b : 0.02	3 : 0.01	
e : 0.23	d : 0.17	f : 0.11	c : 0.11	g : 0.10	] : 0.04	h : 0.04	2 : 0.04	= : 0.04	: : 0.01	3 : 0.01	y : 0.01	b : 0.01	
e : 0.23	d : 0.14	c : 0.13	f : 0.13	g : 0.10	2 : 0.07	h : 0.04	= : 0.04	b : 0.02	3 : 0.01	> : 0.01	4 : 0.01	
d : 0.13	f : 0.13	g : 0.11	2 : 0.10	e : 0.08	] : 0.07	c : 0.05	: : 0.04	h : 0.04	3 : 0.04	= : 0.04	4 : 0.02	> : 0.01	7 : 0.01	b : 0.01	6 : 0.01	i : 0.01	
d : 0.11	e : 0.10	: : 0.08	g : 0.08	2 : 0.07	] : 0.07	c : 0.05	h : 0.04	3 : 0.04	= : 0.04	f : 0.04	b : 0.04	> : 0.02	4 : 0.02	C : 0.01	a : 0.01	7 : 0.01	6 : 0.01	F : 0.01	D : 0.01	i : 0.01	

#score	1465.6421293564129
#seq	67
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_CDS_m1_run2.txt

#BEAR
####cccvvvvvvvvvvvvvcccdddd	chr17:37360699-37360953(+)$1	254	52	79	23.0191
====[ddddtttttttttttdddd]==	chr7:54820005-54820214(-)$1	209	94	121	23.2518
%%%%%ddddtttttttttttdddd444	chr15:38776750-38777018(+)$1	268	84	111	19.6270
gggggg[bbuuuuuuuuuuuubbgggg	chr19:18652473-18652714(-)$1	241	94	121	23.0236
bb[ffffffuuuuuuuuuuuuffffff	chr2:85133040-85133281(+)$1	241	85	112	23.2166
=========xxxxxxxxxxxxxxx===	chr7:100032895-100033163(-)$1	268	227	254	17.6919
bb[ffffffvvvvvvvvvvvvvfffff	chr6:33244067-33244277(+)$1	210	110	137	22.7689
!!bb[ddddwwwwwwwwwwwwwwdddd	chr5:149827119-149827372(-)$1	253	15	42	21.7128
####eeeeeuuuuuuuuuuuueeeee2	chr7:98930891-98931141(+)$1	250	147	174	23.0959
[dddd[cccuuuuuuuuuuuuccc]dd	chr17:37356472-37356703(+)$1	231	51	78	23.6216
:ddddddddtttttttttttdddd]dd	chr11:68658690-68658937(-)$1	247	10	37	21.1829
ddddeeeeettttttttttteeeee]d	chr1:46782152-46782389(+)$1	237	143	170	21.8480
!!eeeeevvvvvvvvvvvvveeeee44	chr14:35786355-35786613(+)$1	258	10	37	22.5484
iiii[bbvvvvvvvvvvvvvbbiiiii	chr8:146017317-146017528(-)$1	211	167	194	22.3840
ffff!!ccctttttttttttcccffff	chr19:48260155-48260393(+)$1	238	49	76	23.0107
::bb[cccvvvvvvvvvvvvvccc]bb	chr9:35056979-35057229(-)$1	250	97	124	21.9859
chhhhhhhhvvvvvvvvvvvvvhhhhh	chr5:180670614-180670842(-)$1	228	194	221	20.7479
:dddd[ccctttttttttttcccdddd	chr19:18684371-18684595(+)$1	224	172	199	21.7041
eee[bbyyyyyyyyyyyyyyyybb]ee	chrX:71496944-71497148(-)$1	204	33	60	19.9903
!ffffffwwwwwwwwwwwwwwffffff	chr6:31605151-31605382(+)$1	231	120	147	22.4291
==!!bb[bbtttttttttttbbbb22=	chr2:85875805-85876083(+)$1	278	162	189	21.6396
dd[bb[cccuuuuuuuuuuuuccc]bb	chr14:20925556-20925826(+)$1	270	79	106	23.3593
hhhhhh[auuuuuuuuuuuua]hhhhh	chrX:153609326-153609552(+)$1	226	84	111	21.6779
c"""eeeeewwwwwwwwwwwwwweeee	chr6:30036961-30037249(+)$1	288	254	281	21.7981
[ccc[cccwwwwwwwwwwwwwwccc]c	chr19:1393161-1393419(+)$1	258	89	116	23.3111
#ccc[cccuuuuuuuuuuuucccccc2	chr8:109260820-109261042(-)$1	222	133	160	23.8126
ddd!!bb[attttttttttta]bb22d	chr19:49611420-49611730(+)$1	310	85	112	22.0948
c"""cccwwwwwwwwwwwwwwccc333	chr16:88712423-88712629(-)$1	206	130	157	23.3952
bb[fffffftttttttttttffffffb	chr1:32669743-32670049(+)$1	306	274	301	22.4282
!!ffffffuuuuuuuuuuuuffffff4	chr12:49666904-49667156(+)$1	252	212	239	23.4976
eee[eeeeettttttttttteeeee]e	chr19:49990770-49991001(+)$1	231	169	196	22.2271
%%bb[dddduuuuuuuuuuuuddddbb	chr10:105151849-105152100(-)$1	251	85	112	21.4842
hhhhhhh[awwwwwwwwwwwwwwa]hh	chr5:180670650-180670899(-)$1	249	29	56	20.9783
dd"""ddddwwwwwwwwwwwwwwdddd	chr6:33243513-33243730(+)$1	217	87	114	21.3708
[hhhhhhhhttttttttttthhhhhhh	chr17:7307234-7307500(-)$1	266	3	30	20.1407
dddffffffuuuuuuuuuuuuffffff	chr19:45412142-45412471(+)$1	329	263	290	23.0995
eeeee!!bbuuuuuuuuuuuubb22ee	chr19:1440247-1440466(+)$1	219	122	149	21.9275
dd[fffffftttttttttttffffff]	chr1:24020292-24020503(+)$1	211	127	154	22.8657
fffffcccvvvvvvvvvvvvvccc]ff	chr1:45242246-45242463(+)$1	217	107	134	23.6933
ccc[dddduuuuuuuuuuuudddd]cc	chr7:128502958-128503199(+)$1	241	26	53	22.9907
b!!ddddvvvvvvvvvvvvvdddd22b	chrX:71495295-71495506(-)$1	211	71	98	21.9595
a!!fffffftttttttttttffffff]	chr20:60963273-60963517(+)$1	244	68	95	23.3058
e####cccvvvvvvvvvvvvvccc]ee	chr6:133136043-133136293(+)$1	250	212	239	24.1540
!!bb[ddddwwwwwwwwwwwwwwdddd	chr5:149827195-149827398(-)$1	203	41	68	21.7128
!!ffffffuuuuuuuuuuuuffffff3	chr11:5290774-5290997(-)$1	223	113	140	23.5662
:::ffffffuuuuuuuuuuuuffffff	chr17:72205841-72206063(+)$1	222	5	32	20.8049
hhhhhhhhwwwwwwwwwwwwwwhhhhh	chr9:140446826-140447081(+)$1	255	162	189	20.4969
=========ttttttttttt=======	chr3:40498730-40498954(+)$1	224	82	109	23.0590
:::ffffffuuuuuuuuuuuuffffff	chr16:685176-685414(-)$1	238	209	236	20.8049
eeeffffffuuuuuuuuuuuuffffff	chr3:12880871-12881084(-)$1	213	14	41	23.1681
deeeeewwwwwwwwwwwwwweeeee33	chr6:133135805-133136017(+)$1	212	46	73	20.8928
!!ffffffuuuuuuuuuuuuffffff3	chr11:5290732-5290971(-)$1	239	87	114	23.5662
eeee[cccuuuuuuuuuuuuccc333e	chr19:5894670-5894937(-)$1	267	93	120	23.6025
[a[ddddvvvvvvvvvvvvvdddd]a]	chr16:223392-223611(+)$1	219	103	130	22.7180
d[bb[ddddtttttttttttdddd]bb	chr16:89629202-89629438(+)$1	236	125	152	22.2277
gggg[cccyyyyyyyyyyyyyyyyccc	chr16:29818087-29818309(+)$1	222	4	31	21.1321
gggggggxxxxxxxxxxxxxxxggggg	chr6:150123362-150123593(+)$1	231	176	203	18.1948

#otherMatches

#Seq PSSM
ACCCGUCUUUUCUCUUCCCUGACCAGU	chr17:37360699-37360953(+)$1	254	52	79	23.0191
UUUACAGUGGUGGCUGAAUACAUUUUG	chr7:54820005-54820214(-)$1	209	94	121	23.2518
gaggagguggAUAUAGAAGAUACUAAA	chr15:38776750-38777018(+)$1	268	84	111	19.6270
CGCUGGAGGACAUGGGACAACCCCCGG	chr19:18652473-18652714(-)$1	241	94	121	23.0236
GGAUUGUUUUAAGAAAAUGGCAGACAA	chr2:85133040-85133281(+)$1	241	85	112	23.2166
AUUUGUUAGAAUAAAGUAAUUUUGCUA	chr7:100032895-100033163(-)$1	268	227	254	17.6919
CGAGGCCAGCACACCAAGACCACUGGC	chr6:33244067-33244277(+)$1	210	110	137	22.7689
GAAAGGGAUUCUGGAAAUGUUUUGUCU	chr5:149827119-149827372(-)$1	253	15	42	21.7128
UCGUAAGUAUUUUAUUAACUUUGCUUU	chr7:98930891-98931141(+)$1	250	147	174	23.0959
GCUCUCCCCUUCGCAGAUAAUGGGAGG	chr17:37356472-37356703(+)$1	231	51	78	23.6216
CCCUGCUGUAACUGAUGACAACAGUCA	chr11:68658690-68658937(-)$1	247	10	37	21.1829
CAUCAGAAUAUUUCCUUAUGGUUUUGG	chr1:46782152-46782389(+)$1	237	143	170	21.8480
uaugggaguuuauuauacuaucccacu	chr14:35786355-35786613(+)$1	258	10	37	22.5484
CGGGGCGGGAGGGGAAGGGACGCCCGG	chr8:146017317-146017528(-)$1	211	167	194	22.3840
GGGUAUGGGGCACCCUCUCACCCACCC	chr19:48260155-48260393(+)$1	238	49	76	23.0107
UGAUGACCUGUAUGGCUAAGUGGUGGU	chr9:35056979-35057229(-)$1	250	97	124	21.9859
GGGGAUUCCGCGUGUCGUGUAGGGAAU	chr5:180670614-180670842(-)$1	228	194	221	20.7479
ACAACAUCCAGAAAGGUACCGGGGUUG	chr19:18684371-18684595(+)$1	224	172	199	21.7041
GCGCAGUCUCCAGCCCCAAUUUCUACG	chrX:71496944-71497148(-)$1	204	33	60	19.9903
CAGGGCCGCCACCUCGAGAAGGGCCCU	chr6:31605151-31605382(+)$1	231	120	147	22.4291
CUGAUGAUGGUAAAUAAGAACACAGAA	chr2:85875805-85876083(+)$1	278	162	189	21.6396
ACUGUCCUAUCACCCUAUACCUAGCAC	chr14:20925556-20925826(+)$1	270	79	106	23.3593
CGGCCUGAAAACCGUGCUCCUGGGGCU	chrX:153609326-153609552(+)$1	226	84	111	21.6779
GAAAUUCUGACUUGCUGCUAUUCCAGA	chr6:30036961-30037249(+)$1	288	254	281	21.7981
GGAGGAGGCUACUACCACUAUUCCUAC	chr19:1393161-1393419(+)$1	258	89	116	23.3111
CUCGCAUCGCGCACUUUUUGGAUCGGC	chr8:109260820-109261042(-)$1	222	133	160	23.8126
cgugaccgcgagcacaaacggggggag	chr19:49611420-49611730(+)$1	310	85	112	22.0948
CCCCGGCCACCCCCAUCCCCAGCCCCU	chr16:88712423-88712629(-)$1	206	130	157	23.3952
UGAGGGGUGGAGAAGGUACAUACUCCC	chr1:32669743-32670049(+)$1	306	274	301	22.4282
AUGUCGAGCUGACUUAAAUACUUGAUC	chr12:49666904-49667156(+)$1	252	212	239	23.4976
GUGGGAUCCAGGCCGGAAUGGGGUCGC	chr19:49990770-49991001(+)$1	231	169	196	22.2271
UUGCAUUGAUUGUCUUAUAUUUCAAGU	chr10:105151849-105152100(-)$1	251	85	112	21.4842
UGGUGCUAGUUUCUCUAAGCCAUCCAG	chr5:180670650-180670899(-)$1	249	29	56	20.9783
GUGUUGAGGAAAGCAGACAUUGACCUC	chr6:33243513-33243730(+)$1	217	87	114	21.3708
GCGCCUGUGAACCUUAUUUGCAUGGGC	chr17:7307234-7307500(-)$1	266	3	30	20.1407
CCCCUGGUGGAAGACAUGCAGCGCCAG	chr19:45412142-45412471(+)$1	329	263	290	23.0995
UGGGCGAGUUCUCCAUCACCUACAAGC	chr19:1440247-1440466(+)$1	219	122	149	21.9275
AAUGGAGUGAUAUUGAUCAGCACUCCU	chr1:24020292-24020503(+)$1	211	127	154	22.8657
CCCGCCGCAUCCACACAGUCCGUGUGC	chr1:45242246-45242463(+)$1	217	107	134	23.6933
AGUGAUCGGAGACGAGGACACGGUGAC	chr7:128502958-128503199(+)$1	241	26	53	22.9907
GCAAGGUCCGAACUGAUAUAACCUACC	chrX:71495295-71495506(-)$1	211	71	98	21.9595
UGUGCUUUUUUUUUUUUCUUAAGGGUG	chr20:60963273-60963517(+)$1	244	68	95	23.3058
UUCUUGCAACCGGAACAAAACUGCCAC	chr6:133136043-133136293(+)$1	250	212	239	24.1540
GAAAGGGAUUCUGGAAAUGUUUUGUCU	chr5:149827195-149827398(-)$1	203	41	68	21.7128
ACCCAGAGAUUUUUUGACAGCUUUGGA	chr11:5290774-5290997(-)$1	223	113	140	23.5662
UUGUGUGCUCUCUUUAGCUUAAGUACA	chr17:72205841-72206063(+)$1	222	5	32	20.8049
UAAACGCCUUUGCCAGCUAUACGGUGU	chr9:140446826-140447081(+)$1	255	162	189	20.4969
UUGGGCGGGUCUUCUUCCUUCUCGCCU	chr3:40498730-40498954(+)$1	224	82	109	23.0590
CUCCUGGGCUCCCUGCCCCCCGCCCAG	chr16:685176-685414(-)$1	238	209	236	20.8049
UCUGCACAGACGCUAACCCACCUGUGU	chr3:12880871-12881084(-)$1	213	14	41	23.1681
CAAUGCUUUUGUUUUUUAGUGCGUUCA	chr6:133135805-133136017(+)$1	212	46	73	20.8928
ACCCAGAGAUUUUUUGACAGCUUUGGA	chr11:5290732-5290971(-)$1	239	87	114	23.5662
CCGCCGCCUGCGUGUACUUUGGCAUAG	chr19:5894670-5894937(-)$1	267	93	120	23.6025
CCCUGGCCGCCCACCUCCCCGCCGAGU	chr16:223392-223611(+)$1	219	103	130	22.7180
GAAGAGAAGAAUUUCAAAGCCUUCGCU	chr16:89629202-89629438(+)$1	236	125	152	22.2277
GUGGGCGGCCUCAUGAACUCCUUCCCG	chr16:29818087-29818309(+)$1	222	4	31	21.1321
UCCACACAUGCAAGGUGAAAGGGUGUG	chr6:150123362-150123593(+)$1	231	176	203	18.1948

#DB
....(((.............)))))))	chr17:37360699-37360953(+)$1	1	52	79	23.0191
((((.((((...........)))).))	chr7:54820005-54820214(-)$1	1	94	121	23.2518
.....((((...........))))...	chr15:38776750-38777018(+)$1	1	84	111	19.6270
((((((.((............))))))	chr19:18652473-18652714(-)$1	1	94	121	23.0236
((.((((((............))))))	chr2:85133040-85133281(+)$1	1	85	112	23.2166
(((((((((...............)))	chr7:100032895-100033163(-)$1	1	227	254	17.6919
((.((((((.............)))))	chr6:33244067-33244277(+)$1	1	110	137	22.7689
..((.((((..............))))	chr5:149827119-149827372(-)$1	1	15	42	21.7128
....(((((............))))).	chr7:98930891-98931141(+)$1	1	147	174	23.0959
.((((.(((............))).))	chr17:37356472-37356703(+)$1	1	51	78	23.6216
.((((((((...........)))).))	chr11:68658690-68658937(-)$1	1	10	37	21.1829
(((((((((...........))))).)	chr1:46782152-46782389(+)$1	1	143	170	21.8480
..(((((.............)))))..	chr14:35786355-35786613(+)$1	1	10	37	22.5484
((((.((.............)))))))	chr8:146017317-146017528(-)$1	1	167	194	22.3840
((((..(((...........)))))))	chr19:48260155-48260393(+)$1	1	49	76	23.0107
..((.(((.............))).))	chr9:35056979-35057229(-)$1	1	97	124	21.9859
)((((((((.............)))))	chr5:180670614-180670842(-)$1	1	194	221	20.7479
.((((.(((...........)))))))	chr19:18684371-18684595(+)$1	1	172	199	21.7041
(((.((................)).))	chrX:71496944-71497148(-)$1	1	33	60	19.9903
.((((((..............))))))	chr6:31605151-31605382(+)$1	1	120	147	22.4291
((..((.((...........))))..)	chr2:85875805-85876083(+)$1	1	162	189	21.6396
((.((.(((............))).))	chr14:20925556-20925826(+)$1	1	79	106	23.3593
((((((.(............).)))))	chrX:153609326-153609552(+)$1	1	84	111	21.6779
(...(((((..............))))	chr6:30036961-30037249(+)$1	1	254	281	21.7981
.(((.(((..............))).)	chr19:1393161-1393419(+)$1	1	89	116	23.3111
.(((.(((............)))))).	chr8:109260820-109261042(-)$1	1	133	160	23.8126
(((..((.(...........).))..)	chr19:49611420-49611730(+)$1	1	85	112	22.0948
(...(((..............)))...	chr16:88712423-88712629(-)$1	1	130	157	23.3952
((.((((((...........)))))))	chr1:32669743-32670049(+)$1	1	274	301	22.4282
..((((((............)))))).	chr12:49666904-49667156(+)$1	1	212	239	23.4976
(((.(((((...........))))).)	chr19:49990770-49991001(+)$1	1	169	196	22.2271
..((.((((............))))))	chr10:105151849-105152100(-)$1	1	85	112	21.4842
(((((((.(..............).))	chr5:180670650-180670899(-)$1	1	29	56	20.9783
((...((((..............))))	chr6:33243513-33243730(+)$1	1	87	114	21.3708
.((((((((...........)))))))	chr17:7307234-7307500(-)$1	1	3	30	20.1407
(((((((((............))))))	chr19:45412142-45412471(+)$1	1	263	290	23.0995
(((((..((............))..))	chr19:1440247-1440466(+)$1	1	122	149	21.9275
((.((((((...........)))))).	chr1:24020292-24020503(+)$1	1	127	154	22.8657
((((((((.............))).))	chr1:45242246-45242463(+)$1	1	107	134	23.6933
(((.((((............)))).))	chr7:128502958-128503199(+)$1	1	26	53	22.9907
(..((((.............))))..)	chrX:71495295-71495506(-)$1	1	71	98	21.9595
(..((((((...........)))))).	chr20:60963273-60963517(+)$1	1	68	95	23.3058
(....(((.............))).))	chr6:133136043-133136293(+)$1	1	212	239	24.1540
..((.((((..............))))	chr5:149827195-149827398(-)$1	1	41	68	21.7128
..((((((............)))))).	chr11:5290774-5290997(-)$1	1	113	140	23.5662
...((((((............))))))	chr17:72205841-72206063(+)$1	1	5	32	20.8049
((((((((..............)))))	chr9:140446826-140447081(+)$1	1	162	189	20.4969
(((((((((...........)))))))	chr3:40498730-40498954(+)$1	1	82	109	23.0590
...((((((............))))))	chr16:685176-685414(-)$1	1	209	236	20.8049
)))((((((............))))))	chr3:12880871-12881084(-)$1	1	14	41	23.1681
((((((..............)))))..	chr6:133135805-133136017(+)$1	1	46	73	20.8928
..((((((............)))))).	chr11:5290732-5290971(-)$1	1	87	114	23.5662
((((.(((............)))...)	chr19:5894670-5894937(-)$1	1	93	120	23.6025
.(.((((.............)))).).	chr16:223392-223611(+)$1	1	103	130	22.7180
(.((.((((...........)))).))	chr16:89629202-89629438(+)$1	1	125	152	22.2277
((((.(((................)))	chr16:29818087-29818309(+)$1	1	4	31	21.1321
(((((((...............)))))	chr6:150123362-150123593(+)$1	1	176	203	18.1948

#PSSM
d : 0.14	! : 0.12	e : 0.10	: : 0.08	= : 0.07	b : 0.07	[ : 0.07	c : 0.07	# : 0.05	g : 0.05	h : 0.05	% : 0.03	f : 0.03	i : 0.01	a : 0.01	
d : 0.15	! : 0.14	e : 0.10	h : 0.08	= : 0.07	# : 0.05	g : 0.05	b : 0.05	f : 0.05	: : 0.05	c : 0.05	% : 0.03	" : 0.03	i : 0.01	a : 0.01	[ : 0.01	
e : 0.12	[ : 0.10	d : 0.10	f : 0.10	b : 0.08	h : 0.08	# : 0.05	= : 0.05	g : 0.05	! : 0.05	" : 0.05	c : 0.05	: : 0.03	% : 0.01	i : 0.01	
f : 0.26	b : 0.10	d : 0.10	h : 0.08	e : 0.07	# : 0.05	= : 0.05	g : 0.05	[ : 0.05	" : 0.05	! : 0.03	c : 0.03	% : 0.01	i : 0.01	
f : 0.24	[ : 0.19	e : 0.12	d : 0.10	h : 0.08	b : 0.05	c : 0.03	g : 0.03	= : 0.03	! : 0.03	% : 0.01	" : 0.01	# : 0.01	
f : 0.22	d : 0.19	c : 0.15	e : 0.10	h : 0.08	b : 0.07	[ : 0.05	g : 0.03	= : 0.03	! : 0.03	
c : 0.22	f : 0.22	d : 0.19	e : 0.08	h : 0.07	[ : 0.05	= : 0.03	b : 0.03	y : 0.01	! : 0.01	w : 0.01	g : 0.01	
f : 0.21	c : 0.19	d : 0.15	v : 0.08	e : 0.07	b : 0.05	h : 0.05	w : 0.05	= : 0.03	[ : 0.03	y : 0.01	a : 0.01	x : 0.01	
f : 0.15	v : 0.14	d : 0.14	u : 0.12	w : 0.08	e : 0.07	c : 0.07	b : 0.05	= : 0.03	h : 0.03	y : 0.03	a : 0.03	x : 0.01	
u : 0.31	t : 0.26	v : 0.17	w : 0.17	x : 0.03	y : 0.03	
u : 0.31	t : 0.26	v : 0.17	w : 0.17	x : 0.03	y : 0.03	
u : 0.31	t : 0.26	v : 0.17	w : 0.17	x : 0.03	y : 0.03	
u : 0.31	t : 0.26	v : 0.17	w : 0.17	x : 0.03	y : 0.03	
u : 0.31	t : 0.26	v : 0.17	w : 0.17	x : 0.03	y : 0.03	
u : 0.31	t : 0.26	v : 0.17	w : 0.17	x : 0.03	y : 0.03	
u : 0.31	t : 0.26	v : 0.17	w : 0.17	x : 0.03	y : 0.03	
u : 0.31	t : 0.26	v : 0.17	w : 0.17	x : 0.03	y : 0.03	
u : 0.31	t : 0.26	v : 0.17	w : 0.17	x : 0.03	y : 0.03	
u : 0.31	t : 0.26	v : 0.17	w : 0.17	x : 0.03	y : 0.03	
u : 0.31	t : 0.26	v : 0.17	w : 0.17	x : 0.03	y : 0.03	
u : 0.19	w : 0.15	d : 0.12	f : 0.10	c : 0.08	v : 0.08	e : 0.07	x : 0.03	b : 0.03	y : 0.03	a : 0.03	h : 0.01	= : 0.01	
f : 0.21	c : 0.19	d : 0.14	w : 0.12	e : 0.08	b : 0.07	x : 0.03	v : 0.03	y : 0.03	] : 0.03	h : 0.01	= : 0.01	
f : 0.22	c : 0.21	d : 0.14	b : 0.08	w : 0.08	e : 0.08	h : 0.07	x : 0.01	i : 0.01	= : 0.01	y : 0.01	g : 0.01	
f : 0.24	d : 0.22	c : 0.14	e : 0.10	h : 0.07	b : 0.05	g : 0.03	x : 0.01	i : 0.01	a : 0.01	2 : 0.01	= : 0.01	3 : 0.01	y : 0.01	
f : 0.24	] : 0.21	d : 0.10	e : 0.10	h : 0.07	2 : 0.07	c : 0.05	g : 0.03	= : 0.03	3 : 0.03	4 : 0.01	i : 0.01	
f : 0.26	d : 0.12	e : 0.08	h : 0.08	b : 0.07	= : 0.05	] : 0.05	2 : 0.05	c : 0.05	3 : 0.05	4 : 0.03	g : 0.03	i : 0.01	a : 0.01	
d : 0.15	f : 0.15	b : 0.10	e : 0.10	h : 0.08	= : 0.07	3 : 0.07	4 : 0.05	c : 0.05	] : 0.05	g : 0.03	2 : 0.03	i : 0.01	

#score	1262.0215155238584
#seq	57
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_UTR_m3_run2.txt

#BEAR
((cccqqqqqqqqccc]	chr11:68659064-68659336(-)$1	272	195	212	12.9487
::cccqqqqqqqqcccg	chr19:49843280-49843593(+)$1	313	120	137	12.4423
gggggqqqqqqqqgggg	chr17:7120543-7120956(-)$1	413	186	203	13.2581
:ddddqqqqqqqqdddd	chr1:156437929-156438251(-)$1	322	236	253	12.9068
ee[bbqqqqqqqqbb44	chr7:99951204-99951514(+)$1	310	55	72	13.3047
hhhhhqqqqqqqqhhhh	chr21:47738487-47738840(-)$1	353	78	95	12.2283
:ddddqqqqqqqqdddd	chr1:11863513-11863916(-)$1	403	234	251	12.9068
d[cccqqqqqqqqccc]	chrX:118753414-118753700(-)$1	286	234	251	14.2030
:ddddqqqqqqqqdddd	chr3:47452260-47452592(+)$1	332	87	104	12.9068
eecccqqqqqqqqccc]	chr9:35697438-35697759(-)$1	321	181	198	14.0672
=====qqqqqqqq====	chr17:4848924-4849217(-)$1	293	238	255	13.5673
b[cccqqqqqqqqccc]	chr6:33419785-33420147(+)$1	362	131	148	14.3082
d!!bbqqqqqqqqbb22	chr19:10426842-10427115(-)$1	273	103	120	13.4478
:ddddqqqqqqqqdddd	chr7:100881309-100881641(-)$1	332	223	240	12.9068
cddddqqqqqqqqdddd	chr11:72534113-72534393(+)$1	280	110	127	13.5054
eeeeeqqqqqqqqeeee	chr17:27072202-27072449(+)$1	247	13	30	12.6757
eeeeeqqqqqqqqeeee	chr16:28847303-28847547(+)$1	244	219	236	12.6757
Bddddqqqqqqqqdddd	chr16:67267639-67267940(-)$1	301	190	207	12.9040
"""bbqqqqqqqqbb33	chr3:47451912-47452180(+)$1	268	176	193	13.7292
&ddddqqqqqqqqdddd	chr3:47452166-47452432(+)$1	266	181	198	13.0702
ee!!aqqqqqqqqa22e	chr5:176916795-176917059(-)$1	264	128	145	12.8934
:ddddqqqqqqqqdddd	chr1:32831481-32831724(-)$1	243	180	197	12.9068
b!!bbqqqqqqqqbb22	chr7:99951027-99951342(+)$1	315	281	298	13.5530
gg[bbqqqqqqqqbb]g	chr11:47491246-47491576(-)$1	330	75	92	13.3762
c!!bbqqqqqqqqbb22	chr1:153921685-153921961(-)$1	276	162	179	13.5934
f:cccqqqqqqqqccc:	chr2:159314092-159314378(+)$1	286	249	266	11.9711
iiiiiqqqqqqqqiiii	chr7:150742814-150743180(+)$1	366	41	58	13.4158
ddcccqqqqqqqqccc]	chr17:47788449-47788695(-)$1	246	45	62	14.0210
gggggqqqqqqqqgggg	chr12:56992088-56992346(-)$1	258	45	62	13.2581
fffffqqqqqqqqffff	chr2:172016831-172017099(-)$1	268	79	96	12.0579
fffffqqqqqqqqffff	chr16:30389867-30390298(-)$1	431	202	219	12.0579
f[cccqqqqqqqqccc2	chr3:9975721-9976032(+)$1	311	118	135	14.1357
b[cccqqqqqqqqccc]	chr2:242694645-242695032(+)$1	387	212	229	14.3082
[ddddqqqqqqqqdddd	chr20:307642-307897(+)$1	255	190	207	13.5719
cc[bbqqqqqqqqbb]c	chr6:24720215-24720518(-)$1	303	216	233	13.2956
:ddddqqqqqqqqdddd	chr12:53845976-53846223(+)$1	247	13	30	12.9068
c[cccqqqqqqqqccc]	chr16:450257-450508(+)$1	251	118	135	14.3486
=====qqqqqqqq====	chr19:39875071-39875352(+)$1	281	15	32	13.5673
:bbbbqqqqqqqqbb]b	chr11:65660106-65660350(-)$1	244	14	31	11.7561
gg[bbqqqqqqqqbb]g	chr12:58141958-58142261(-)$1	303	233	250	13.3762
!!cccqqqqqqqqccc2	chr1:153923948-153924220(-)$1	272	198	215	14.4517
ee!!aqqqqqqqqa22e	chr1:153782448-153782731(-)$1	283	29	46	12.8934
hhhhhqqqqqqqqhhhh	chr13:114538807-114539095(-)$1	288	20	37	12.2283
!!cccqqqqqqqqccc2	chr15:64448584-64448941(-)$1	357	258	275	14.4517
:ddddqqqqqqqqdddd	chr19:47219617-47219941(-)$1	324	51	68	12.9068
e[cccqqqqqqqqccce	chr1:40887837-40888134(+)$1	297	235	252	14.0782
""cccqqqqqqqqccc3	chr3:47451498-47451806(+)$1	308	50	67	14.3945
!ddddqqqqqqqqdddd	chr1:156434868-156435199(-)$1	331	95	112	13.6475
bb[bbqqqqqqqqbbbb	chr17:7154640-7154882(-)$1	242	22	39	12.3307
!ddddqqqqqqqqdddd	chr7:143079950-143080277(+)$1	327	97	114	13.6475
d[cccqqqqqqqqcccd	chr1:151030320-151030567(-)$1	247	193	210	14.0405
ccc[aqqqqqqqqa]cc	chr19:48894598-48894826(-)$1	228	98	115	13.2368
gggggqqqqqqqqgggg	chr7:100286352-100286607(-)$1	255	20	37	13.2581
:ddddqqqqqqqqdddd	chr2:242694542-242694845(+)$1	303	20	37	12.9068
:ddddqqqqqqqqdddd	chr17:27072381-27072655(+)$1	274	212	229	12.9068
"ddddqqqqqqqqdddd	chr20:44576413-44576744(+)$1	331	216	233	13.6096
a!!bbqqqqqqqqbb22	chr9:131583182-131583477(+)$1	295	220	237	13.6762
eeeeeqqqqqqqqeeee	chr7:150929650-150929907(+)$1	257	131	148	12.6757
f[cccqqqqqqqqccc2	chr3:9975832-9976127(+)$1	295	7	24	14.1357
eeeeeqqqqqqqqeeee	chr20:43560794-43561043(+)$1	249	124	141	12.6757
b[cccqqqqqqqqccc2	chr1:28563217-28563513(+)$1	296	175	192	14.2414
eeebbqqqqqqqqbb]e	chr6:32136214-32136488(-)$1	274	5	22	13.1060
b!!bbqqqqqqqqbb22	chr3:38455006-38455289(+)$1	283	235	252	13.5530
eeeeeqqqqqqqqeeee	chr19:54971515-54971814(+)$1	299	161	178	12.6757
bbcccqqqqqqqqccc]	chr2:68479205-68479500(-)$1	295	160	177	13.8415
""cccqqqqqqqqccc3	chr16:30681691-30681986(+)$1	295	72	89	14.3945
hhhhhqqqqqqqqhhhh	chr9:140507560-140507884(+)$1	324	201	218	12.2283
[ddddqqqqqqqqdddd	chr19:56671740-56672077(+)$1	337	175	192	13.5719
"""bbqqqqqqqqbb]d	chr11:203761-204077(-)$1	316	164	181	13.5070
""cccqqqqqqqqccc3	chr16:81744149-81744446(+)$1	297	113	130	14.3945

#otherMatches

#Seq PSSM
AAGUCACAGCAUAGACA	chr11:68659064-68659336(-)$1	272	195	212	12.9487
CCGCCCAAUUCACGGCC	chr19:49843280-49843593(+)$1	313	120	137	12.4423
GCCCCCGAACUCCGGGG	chr17:7120543-7120956(-)$1	413	186	203	13.2581
CCGGUGUCCCCAAGCCG	chr1:156437929-156438251(-)$1	322	236	253	12.9068
CACUCUUUUCCCUGACC	chr7:99951204-99951514(+)$1	310	55	72	13.3047
UUGCGUCACCCUCUGCG	chr21:47738487-47738840(-)$1	353	78	95	12.2283
UGGCUGGAGCUCAAGCC	chr1:11863513-11863916(-)$1	403	234	251	12.9068
CCAGUUUUCAUUCACUC	chrX:118753414-118753700(-)$1	286	234	251	14.2030
AGGUCCCGCUCAAGACC	chr3:47452260-47452592(+)$1	332	87	104	12.9068
GCCUGCCCCUCCCCAGA	chr9:35697438-35697759(-)$1	321	181	198	14.0672
UUUUUUUCUGAAUAAAA	chr17:4848924-4849217(-)$1	293	238	255	13.5673
CAGGGACCCUUGCCCCA	chr6:33419785-33420147(+)$1	362	131	148	14.3082
GCUUCCCUCCCUUGACU	chr19:10426842-10427115(-)$1	273	103	120	13.4478
CUGAAGGCUGCUGUUCA	chr7:100881309-100881641(-)$1	332	223	240	12.9068
UUCCCUCCUUCUUGGGA	chr11:72534113-72534393(+)$1	280	110	127	13.5054
CGGUGCUCCCUCCCGCC	chr17:27072202-27072449(+)$1	247	13	30	12.6757
UUGGCAUGGAAGAGCUG	chr16:28847303-28847547(+)$1	244	219	236	12.6757
CCCUCCCCACUAAGAGG	chr16:67267639-67267940(-)$1	301	190	207	12.9040
CACAGCACCACUUCUCU	chr3:47451912-47452180(+)$1	268	176	193	13.7292
AGGUCCCGCUCAAGACC	chr3:47452166-47452432(+)$1	266	181	198	13.0702
CCCAGUCAUCUCCCGUG	chr5:176916795-176917059(-)$1	264	128	145	12.8934
CGGAUGCACCCAAGUCC	chr1:32831481-32831724(-)$1	243	180	197	12.9068
GAGUUCAAUGAGAGAGA	chr7:99951027-99951342(+)$1	315	281	298	13.5530
UGUCUUCCUCCUUAGCC	chr11:47491246-47491576(-)$1	330	75	92	13.3762
GCUCCCCAAGUCUGGUU	chr1:153921685-153921961(-)$1	276	162	179	13.5934
CCGCGGAUCCUCACGCU	chr2:159314092-159314378(+)$1	286	249	266	11.9711
CUGGGAAUUCAAACCUA	chr7:150742814-150743180(+)$1	366	41	58	13.4158
GCCUGUGCUUUUCCAGA	chr17:47788449-47788695(-)$1	246	45	62	14.0210
GUCAGAUACAACCCUGA	chr12:56992088-56992346(-)$1	258	45	62	13.2581
CCGCCAUGACGGAGGCG	chr2:172016831-172017099(-)$1	268	79	96	12.0579
GGCCCUGCCUCCUGGGC	chr16:30389867-30390298(-)$1	431	202	219	12.0579
GAGGCUGACUUCUGCCC	chr3:9975721-9976032(+)$1	311	118	135	14.1357
GCCACUCUGUGCCGUGU	chr2:242694645-242695032(+)$1	387	212	229	14.3082
ACACGCCCCUCCUCGUG	chr20:307642-307897(+)$1	255	190	207	13.5719
CUGUUCAACGUGAGAGA	chr6:24720215-24720518(-)$1	303	216	233	13.2956
CGGGGUCUCUUUCcccc	chr12:53845976-53846223(+)$1	247	13	30	12.9068
GCAGGACCAACUACCUC	chr16:450257-450508(+)$1	251	118	135	14.3486
GGUCUGGUUGGUGAGAC	chr19:39875071-39875352(+)$1	281	15	32	13.5673
UGCAGAUGCCACCCUAG	chr11:65660106-65660350(-)$1	244	14	31	11.7561
AAUAAUGGUCUUUUUUU	chr12:58141958-58142261(-)$1	303	233	250	13.3762
CUGCCUCCUCCUUGGCC	chr1:153923948-153924220(-)$1	272	198	215	14.4517
ACAUGAUCCCUCCCCGG	chr1:153782448-153782731(-)$1	283	29	46	12.8934
AUCUGUCCCACAUUAGA	chr13:114538807-114539095(-)$1	288	20	37	12.2283
UUCACUCAGUGACGUGC	chr15:64448584-64448941(-)$1	357	258	275	14.4517
CUGGGACCUCCAACCCA	chr19:47219617-47219941(-)$1	324	51	68	12.9068
UUGAGUCCCUUCCCUCA	chr1:40887837-40888134(+)$1	297	235	252	14.0782
CUGGCCCACGACUGCCU	chr3:47451498-47451806(+)$1	308	50	67	14.3945
AGUCACCCACACUUGAC	chr1:156434868-156435199(-)$1	331	95	112	13.6475
GGUGCCACUCCCAGCCC	chr17:7154640-7154882(-)$1	242	22	39	12.3307
AGACACAGUUCCAUGUU	chr7:143079950-143080277(+)$1	327	97	114	13.6475
ACAGCGUGUUUUAGCUU	chr1:151030320-151030567(-)$1	247	193	210	14.0405
GGGUCCCUCUUCCGUCC	chr19:48894598-48894826(-)$1	228	98	115	13.2368
UGGGUUUUUGUUUGCUU	chr7:100286352-100286607(-)$1	255	20	37	13.2581
GUCUGCUCCUCCUCAGA	chr2:242694542-242694845(+)$1	303	20	37	12.9068
cggaaauccccucuucc	chr17:27072381-27072655(+)$1	274	212	229	12.9068
UUGUAAAAGGAAAUACA	chr20:44576413-44576744(+)$1	331	216	233	13.6096
GCCCACCCAAUCUUGUU	chr9:131583182-131583477(+)$1	295	220	237	13.6762
GGCCCUGAAACCCGGGC	chr7:150929650-150929907(+)$1	257	131	148	12.6757
GAGGCUGACUUCUGCCC	chr3:9975832-9976127(+)$1	295	7	24	14.1357
AGGUGUAGCUUCUCACC	chr20:43560794-43561043(+)$1	249	124	141	12.6757
CCAGCACGCCUUAGCUU	chr1:28563217-28563513(+)$1	296	175	192	14.2414
ACCCUUCUAAUUCAGAG	chr6:32136214-32136488(-)$1	274	5	22	13.1060
GCUAUGCCCACAGAUCA	chr3:38455006-38455289(+)$1	283	235	252	13.5530
UGGGCCCUUCCCUGCCC	chr19:54971515-54971814(+)$1	299	161	178	12.6757
gccgccgUUUCCUGCGA	chr2:68479205-68479500(-)$1	295	160	177	13.8415
CACCACCUCUUAAUGGC	chr16:30681691-30681986(+)$1	295	72	89	14.3945
ACAGCCCUGUGCUGCUG	chr9:140507560-140507884(+)$1	324	201	218	12.2283
ccuuuuccUGCCUGAAG	chr19:56671740-56672077(+)$1	337	175	192	13.5719
CAUAGCCCCCUUCCUUG	chr11:203761-204077(-)$1	316	164	181	13.5070
CUGAUUUCCAAAUGUCU	chr16:81744149-81744446(+)$1	297	113	130	14.3945

#DB
..(((........))).	chr11:68659064-68659336(-)$1	1	195	212	12.9487
..(((........)))(	chr19:49843280-49843593(+)$1	1	120	137	12.4423
(((((........))))	chr17:7120543-7120956(-)$1	1	186	203	13.2581
.((((........))))	chr1:156437929-156438251(-)$1	1	236	253	12.9068
((.((........))..	chr7:99951204-99951514(+)$1	1	55	72	13.3047
(((((........))))	chr21:47738487-47738840(-)$1	1	78	95	12.2283
.((((........))))	chr1:11863513-11863916(-)$1	1	234	251	12.9068
(.(((........))).	chrX:118753414-118753700(-)$1	1	234	251	14.2030
.((((........))))	chr3:47452260-47452592(+)$1	1	87	104	12.9068
(((((........))).	chr9:35697438-35697759(-)$1	1	181	198	14.0672
(((((........))))	chr17:4848924-4849217(-)$1	1	238	255	13.5673
(.(((........))).	chr6:33419785-33420147(+)$1	1	131	148	14.3082
(..((........))..	chr19:10426842-10427115(-)$1	1	103	120	13.4478
.((((........))))	chr7:100881309-100881641(-)$1	1	223	240	12.9068
(((((........))))	chr11:72534113-72534393(+)$1	1	110	127	13.5054
(((((........))))	chr17:27072202-27072449(+)$1	1	13	30	12.6757
(((((........))))	chr16:28847303-28847547(+)$1	1	219	236	12.6757
(((((........))))	chr16:67267639-67267940(-)$1	1	190	207	12.9040
...((........))..	chr3:47451912-47452180(+)$1	1	176	193	13.7292
.((((........))))	chr3:47452166-47452432(+)$1	1	181	198	13.0702
((..(........)..)	chr5:176916795-176917059(-)$1	1	128	145	12.8934
.((((........))))	chr1:32831481-32831724(-)$1	1	180	197	12.9068
(..((........))..	chr7:99951027-99951342(+)$1	1	281	298	13.5530
((.((........)).)	chr11:47491246-47491576(-)$1	1	75	92	13.3762
(..((........))..	chr1:153921685-153921961(-)$1	1	162	179	13.5934
).(((........))).	chr2:159314092-159314378(+)$1	1	249	266	11.9711
(((((........))))	chr7:150742814-150743180(+)$1	1	41	58	13.4158
(((((........))).	chr17:47788449-47788695(-)$1	1	45	62	14.0210
(((((........))))	chr12:56992088-56992346(-)$1	1	45	62	13.2581
(((((........))))	chr2:172016831-172017099(-)$1	1	79	96	12.0579
(((((........))))	chr16:30389867-30390298(-)$1	1	202	219	12.0579
(.(((........))).	chr3:9975721-9976032(+)$1	1	118	135	14.1357
(.(((........))).	chr2:242694645-242695032(+)$1	1	212	229	14.3082
.((((........))))	chr20:307642-307897(+)$1	1	190	207	13.5719
((.((........)).)	chr6:24720215-24720518(-)$1	1	216	233	13.2956
.((((........))))	chr12:53845976-53846223(+)$1	1	13	30	12.9068
(.(((........))).	chr16:450257-450508(+)$1	1	118	135	14.3486
(((((........))))	chr19:39875071-39875352(+)$1	1	15	32	13.5673
.((((........)).)	chr11:65660106-65660350(-)$1	1	14	31	11.7561
((.((........)).)	chr12:58141958-58142261(-)$1	1	233	250	13.3762
..(((........))).	chr1:153923948-153924220(-)$1	1	198	215	14.4517
((..(........)..)	chr1:153782448-153782731(-)$1	1	29	46	12.8934
(((((........))))	chr13:114538807-114539095(-)$1	1	20	37	12.2283
..(((........))).	chr15:64448584-64448941(-)$1	1	258	275	14.4517
.((((........))))	chr19:47219617-47219941(-)$1	1	51	68	12.9068
(.(((........))))	chr1:40887837-40888134(+)$1	1	235	252	14.0782
..(((........))).	chr3:47451498-47451806(+)$1	1	50	67	14.3945
.((((........))))	chr1:156434868-156435199(-)$1	1	95	112	13.6475
((.((........))))	chr17:7154640-7154882(-)$1	1	22	39	12.3307
.((((........))))	chr7:143079950-143080277(+)$1	1	97	114	13.6475
(.(((........))))	chr1:151030320-151030567(-)$1	1	193	210	14.0405
(((.(........).))	chr19:48894598-48894826(-)$1	1	98	115	13.2368
(((((........))))	chr7:100286352-100286607(-)$1	1	20	37	13.2581
.((((........))))	chr2:242694542-242694845(+)$1	1	20	37	12.9068
.((((........))))	chr17:27072381-27072655(+)$1	1	212	229	12.9068
.((((........))))	chr20:44576413-44576744(+)$1	1	216	233	13.6096
(..((........))..	chr9:131583182-131583477(+)$1	1	220	237	13.6762
(((((........))))	chr7:150929650-150929907(+)$1	1	131	148	12.6757
(.(((........))).	chr3:9975832-9976127(+)$1	1	7	24	14.1357
(((((........))))	chr20:43560794-43561043(+)$1	1	124	141	12.6757
(.(((........))).	chr1:28563217-28563513(+)$1	1	175	192	14.2414
(((((........)).)	chr6:32136214-32136488(-)$1	1	5	22	13.1060
(..((........))..	chr3:38455006-38455289(+)$1	1	235	252	13.5530
(((((........))))	chr19:54971515-54971814(+)$1	1	161	178	12.6757
(((((........))).	chr2:68479205-68479500(-)$1	1	160	177	13.8415
..(((........))).	chr16:30681691-30681986(+)$1	1	72	89	14.3945
(((((........))))	chr9:140507560-140507884(+)$1	1	201	218	12.2283
.((((........))))	chr19:56671740-56672077(+)$1	1	175	192	13.5719
...((........)).)	chr11:203761-204077(-)$1	1	164	181	13.5070
..(((........))).	chr16:81744149-81744446(+)$1	1	113	130	14.3945

#PSSM
: : 0.15	e : 0.15	b : 0.10	" : 0.08	g : 0.07	c : 0.07	f : 0.07	d : 0.05	! : 0.05	h : 0.04	= : 0.02	[ : 0.02	( : 0.01	B : 0.01	& : 0.01	i : 0.01	a : 0.01	
d : 0.25	e : 0.14	[ : 0.12	! : 0.10	g : 0.07	" : 0.07	h : 0.04	b : 0.04	: : 0.02	= : 0.02	f : 0.02	c : 0.02	( : 0.01	i : 0.01	
c : 0.30	d : 0.24	! : 0.10	e : 0.08	[ : 0.07	g : 0.04	h : 0.04	= : 0.02	" : 0.02	f : 0.02	i : 0.01	b : 0.01	
c : 0.28	d : 0.24	b : 0.20	e : 0.07	g : 0.04	h : 0.04	= : 0.02	! : 0.02	f : 0.02	i : 0.01	[ : 0.01	
c : 0.28	d : 0.24	b : 0.20	e : 0.07	g : 0.04	h : 0.04	a : 0.04	= : 0.02	f : 0.02	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.28	d : 0.24	b : 0.20	e : 0.07	g : 0.04	h : 0.04	a : 0.04	= : 0.02	f : 0.02	i : 0.01	
c : 0.28	d : 0.24	b : 0.20	e : 0.07	g : 0.04	h : 0.04	= : 0.02	2 : 0.02	f : 0.02	i : 0.01	] : 0.01	
c : 0.30	d : 0.24	2 : 0.10	] : 0.08	e : 0.07	g : 0.04	h : 0.04	= : 0.02	f : 0.02	4 : 0.01	3 : 0.01	i : 0.01	b : 0.01	
d : 0.27	2 : 0.14	e : 0.12	] : 0.11	g : 0.08	3 : 0.05	h : 0.04	= : 0.02	f : 0.02	c : 0.02	b : 0.02	4 : 0.01	: : 0.01	i : 0.01	

#score	932.0031305886398
#seq	70
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_transcript_m2_run2.txt

#BEAR
ffffff!!cccnnnnnccc333ffff	chr11:61584587-61584837(+)$1	250	132	158	12.1364
eeee[accc[ccclllccc]ccc]a]	chr22:50624803-50625069(+)$1	266	48	74	8.3142
e[ccc!!ddddnnnnndddd22ccc]	chr7:1892258-1892524(-)$1	266	141	167	12.8412
ddd[dddd[annnnnadddd]dddd>	chr1:145825735-145826035(-)$1	300	62	88	9.6584
cc####eeeeennnnneeeee333cc	chr4:880117-880394(-)$1	277	48	74	12.9715
dd####eeeeennnnneeeee66666	chr19:1173243-1173503(-)$1	260	210	236	10.2544
ee[hhhhhhhhnnnnnhhhhhhhh]e	chr1:27927489-27927715(-)$1	226	187	213	10.1152
eeeee!!ddddnnnnnddddeeeee]	chr16:81517759-81518026(+)$1	267	23	49	12.6822
===========nnnnn==========	chr20:57467336-57467585(+)$1	249	137	163	13.3540
deeeee[cccooooooccceeeee]d	chr9:130736483-130736743(-)$1	260	9	35	8.5557
iiiiiiiii[annnnna]iiiiiiii	chr19:3100727-3100980(+)$1	253	188	214	12.9448
eeeee[eeeeennnnneeeee]eeee	chr19:2047927-2048213(-)$1	286	72	98	12.4860
c[a[a[eeeeennnnneeeee]a]a]	chr15:64753385-64753674(+)$1	289	120	146	13.1808
eeeee[ddddnnnnndddd]eeeee:	chr16:88588979-88589275(+)$1	296	197	223	9.3746
eeee[eeeeeooooooeeeeeeeeee	chr22:50871382-50871665(+)$1	283	142	168	8.4200
####gggggggnnnnnggggggg333	chr16:2128063-2128336(+)$1	273	66	92	12.9264
===========lll============	chr22:45126818-45127149(+)$1	331	288	314	9.2066
ccc[gggggggnnnnnggggggg]cc	chr17:3830297-3830552(-)$1	255	3	29	12.7003
c]cccffffffnnnnnffffffcccg	chr1:227162069-227162342(+)$1	273	121	147	10.5409
ddd$$$$$cccnnnnnccc333dddd	chr16:87881957-87882190(-)$1	233	113	139	11.3873
%%a[a[a[a[annnnna]a]a]a]a7	chr15:40342813-40343090(+)$1	277	184	210	11.6266
"ddddccc[bbnnnnnbb22ccc]dd	chr13:114144479-114144768(-)$1	289	69	95	10.0776
eeeee[eeeeennnnneeeeeeeeee	chr14:105194744-105195000(+)$1	256	197	223	12.2518
d[bb!!ccc[annnnna]cccbbddd	chr11:66405541-66405783(+)$1	242	143	169	11.4846
Fbbccc[ddddnnnnndddd]ccc]b	chr16:88522744-88523004(+)$1	260	147	173	11.2119
=========[annnnna]========	chr17:7747742-7747987(+)$1	245	101	127	13.4982
[dddd[ccc[annnnna]ccc]dddd	chr22:32340730-32341024(+)$1	294	240	266	12.0697
cc####ddddnnnnndddd333ccc5	chr4:52709246-52709500(+)$1	254	9	35	10.2079
fff!!bb[cccnnnnncccbb22fff	chr12:22797951-22798254(+)$1	303	267	293	11.2034
$$$$gggggggnnnnnggggggg333	chr16:89041414-89041671(-)$1	257	49	75	12.1883
[ccc!!eeeeennnnneeeee22ccc	chr15:66885663-66885952(+)$1	289	185	211	12.5643
eeeeddddcccnnnnnccc]dddd44	chr12:132402829-132403171(+)$1	342	279	305	11.9348
[eeeee[cccooooooccceeeee]a	chr2:64880512-64880821(-)$1	309	12	38	8.8098
fffff!!ddddnnnnnddddffffff	chr2:159314925-159315185(+)$1	260	160	186	11.7608
:ccc[ffffffnnnnnffffffccce	chr17:8059078-8059341(-)$1	263	157	183	9.9771
c####ffffffnnnnnffffffccc:	chr19:2047601-2047838(-)$1	237	176	202	10.3220
ggggg!!ddddnnnnnddddgggggg	chr13:113986720-113987068(-)$1	348	250	276	12.8078
eeeddddddddnnnnndddd======	chr20:57415148-57415480(-)$1	332	80	106	12.1799
ffdddd!!cccnnnnncccdddd]ff	chr10:70092600-70092860(+)$1	260	208	234	11.7043
[bb"""eeeeennnnneeeee]bb==	chr10:71921924-71922196(-)$1	272	218	244	12.1036
b[ccc!!ddddnnnnndddd22ccc]	chr19:52551634-52551931(-)$1	297	268	294	12.5267
e!!==========lll==========	chr1:16175827-16176082(+)$1	255	72	98	9.3630
[ggggggg!!annnnna22ggggggg	chr5:302120-302367(+)$1	247	40	66	12.1923
fff[dddd[bbnnnnnbb]ddddfff	chr19:55998234-55998499(+)$1	265	18	44	10.2517
A:eeeee[cccnnnnnccc]eeeeef	chr7:91762920-91763248(-)$1	328	105	131	10.4022
&&a[gggggggnnnnnggggggg]ab	chr5:39006661-39006916(-)$1	255	219	245	11.3336
!!eeeee[cccnnnnnccc]eeeee]	chr7:97916494-97916769(+)$1	275	185	211	12.6843
ccc[ccc!!bbnnnnnbbccc]ccc]	chr19:3507620-3507900(+)$1	280	111	137	11.7788
ff"""bb[a[annnnna]a]bb22ff	chr12:96793045-96793321(-)$1	276	19	45	11.1768
fffff!!ddddnnnnnddddffffff	chr14:105251972-105252206(-)$1	234	19	45	11.7608
eeee!!eeeee[allla]eeeeeeee	chr21:45557189-45557411(+)$1	222	123	149	8.5738
eeebbbb[cccnnnnnccc22bb444	chr12:132540413-132540699(+)$1	286	2	28	10.9253
cc[hhhhhhhhnnnnnhhhhhhhh]c	chr7:150823835-150824088(+)$1	253	31	57	10.0537
ddd[bb[ddddnnnnndddd22bb]d	chr10:103589965-103590280(-)$1	315	154	180	11.1529
e$$$$$eeeeennnnneeeee22eee	chr9:37188896-37189117(+)$1	221	151	177	11.5206
ee[ccc[ddddoooooodddd]ccce	chr6:137078474-137078792(-)$1	318	202	228	8.6879

#otherMatches

#Seq PSSM
GCGGUCGCGGACAUCAUCUUUAGGCU	chr11:61584587-61584837(+)$1	250	132	158	12.1364
CGCUGCCGGGAGCGGCGCUGCCGAGG	chr22:50624803-50625069(+)$1	266	48	74	8.3142
GAGUCAUUACAAGGCCUGUGCCGACA	chr7:1892258-1892524(-)$1	266	141	167	12.8412
AAGCUCAGACUGCCUGUUGACCUUCU	chr1:145825735-145826035(-)$1	300	62	88	9.6584
UGAAAAUGGUCUCCAUGGCCGCAGCA	chr4:880117-880394(-)$1	277	48	74	12.9715
UGAGAUGGCCCGAGUGGGGCCCGGGA	chr19:1173243-1173503(-)$1	260	210	236	10.2544
GUCGUGGGGGCAGGGAGCCCCUACCA	chr1:27927489-27927715(-)$1	226	187	213	10.1152
CCAGGUGGAAGUCGCCCUUCCCUGGC	chr16:81517759-81518026(+)$1	267	23	49	12.6822
CCUCGCCAAAGGGAGGCUUUGGCGGG	chr20:57467336-57467585(+)$1	249	137	163	13.3540
uuuggcauagAAGCCCCUGGCCAACA	chr9:130736483-130736743(-)$1	260	9	35	8.5557
UGCUUUGCACCGAAAAGCUGCGGAGU	chr19:3100727-3100980(+)$1	253	188	214	12.9448
CCAGGGGCUCCCUCCAGGGGUGUCUG	chr19:2047927-2048213(-)$1	286	72	98	12.4860
UGGGAUCCUGCAGUAAGUAGGUUGUG	chr15:64753385-64753674(+)$1	289	120	146	13.1808
UCUAGCGUCCUCCGUGGACCCUGGAC	chr16:88588979-88589275(+)$1	296	197	223	9.3746
uagugagguuggggugagccugcugc	chr22:50871382-50871665(+)$1	283	142	168	8.4200
AAGGGGCAUUUGUGGAGGGUGCUGGG	chr16:2128063-2128336(+)$1	273	66	92	12.9264
CCUGUGUGGGUCUUACCUGUGCAGGU	chr22:45126818-45127149(+)$1	331	288	314	9.2066
GCCUUUCAGCAUUGGCUGCUGGAUGG	chr17:3830297-3830552(-)$1	255	3	29	12.7003
GAGUGGGGUCCCACGAGGACCCGGGG	chr1:227162069-227162342(+)$1	273	121	147	10.5409
UCAGAUCUGACCCACCGUCCCAUGAG	chr16:87881957-87882190(-)$1	233	113	139	11.3873
uguguggggggugugguguguggggg	chr15:40342813-40343090(+)$1	277	184	210	11.6266
GGGCCGGGGCCGAGCGGGAACCCAGG	chr13:114144479-114144768(-)$1	289	69	95	10.0776
GGCGCCAGGGCCCCUUGCUCUGUGCC	chr14:105194744-105195000(+)$1	256	197	223	12.2518
GUCCUGGCCGCGAGGGGGGGUGGUGC	chr11:66405541-66405783(+)$1	242	143	169	11.4846
UGGGCUGAGCACUGUUUGCUGAGCAC	chr16:88522744-88523004(+)$1	260	147	173	11.2119
UGAGGAAGGGGAGGGACGUCUUUUUU	chr17:7747742-7747987(+)$1	245	101	127	13.4982
CGCCCCGCCACUUCCUGAGGCUGGGC	chr22:32340730-32341024(+)$1	294	240	266	12.0697
CCGCGGUUUAGCCAAUGGAGAAGGCG	chr4:52709246-52709500(+)$1	254	9	35	10.2079
AUGAAGUUCCUAGAGAAGGGCCACAu	chr12:22797951-22798254(+)$1	303	267	293	11.2034
GAGGGUCAGGGUGGACCUCUGACAUG	chr16:89041414-89041671(-)$1	257	49	75	12.1883
UUAACAGUGGAAUAAAUUCAUGUUUA	chr15:66885663-66885952(+)$1	289	185	211	12.5643
AGCCCCUGAGCUCCCUGCUCCAGGAC	chr12:132402829-132403171(+)$1	342	279	305	11.9348
GAGGAGUGGGCGGAAACCCCUCCUGA	chr2:64880512-64880821(-)$1	309	12	38	8.8098
GUUGUUAGAGUAAUGAGCUUGCAGCC	chr2:159314925-159315185(+)$1	260	160	186	11.7608
AUGGUGUUUUAAUUugugagacccag	chr17:8059078-8059341(-)$1	263	157	183	9.9771
CUGAGAUGGCCCAGGAGGCCGUGGGA	chr19:2047601-2047838(-)$1	237	176	202	10.3220
GGGCAGUGAGUGUGCAGCUCUGCCUC	chr13:113986720-113987068(-)$1	348	250	276	12.8078
GGGGACUCAGGGAAUACCUGGGCGCC	chr20:57415148-57415480(-)$1	332	80	106	12.1799
UAAAGGACGCUUAGCCGGCCCUUAUA	chr10:70092600-70092860(+)$1	260	208	234	11.7043
gacucuuggugugugucauuaugucc	chr10:71921924-71922196(-)$1	272	218	244	12.1036
AGUGGGGCUCAGUGAUUGAGAAUCGA	chr19:52551634-52551931(-)$1	297	268	294	12.5267
GAGGAUCAUUGAUUGUGUUGGUGGUU	chr1:16175827-16176082(+)$1	255	72	98	9.3630
GAGGGCGGAUCAUUGAGUGCUGCUCu	chr5:302120-302367(+)$1	247	40	66	12.1923
GCUACCAGGCCGAGGGGGGCUGGGGC	chr19:55998234-55998499(+)$1	265	18	44	10.2517
UGGCGGUGGCUGGAUUGGCGGCUGUG	chr7:91762920-91763248(-)$1	328	105	131	10.4022
UAGGGUCCAUGCUUCUCGUGGAUGUG	chr5:39006661-39006916(-)$1	255	219	245	11.3336
GCCCUGUGCUCUGGCUGAGGAUGGGA	chr7:97916494-97916769(+)$1	275	185	211	12.6843
GAAGCUGACGGCAUCACCUAGGUUUG	chr19:3507620-3507900(+)$1	280	111	137	11.7788
GGGAGGUGGGCGAGGAGGCGGCGGUC	chr12:96793045-96793321(-)$1	276	19	45	11.1768
GCCUCCGGCUGUGCCUCAGCGAGGUG	chr14:105251972-105252206(-)$1	234	19	45	11.7608
GGGUCUGGGCAGGGCACGUGCCUGCC	chr21:45557189-45557411(+)$1	222	123	149	8.5738
UCACUGUGCCCAUGUGGGGAAGCUAA	chr12:132540413-132540699(+)$1	286	2	28	10.9253
CAAGAGGCAGGGCCCGCUUGCCUUGU	chr7:150823835-150824088(+)$1	253	31	57	10.0537
CUGAUGUGUGUUGCCUAUGCCCCGAC	chr10:103589965-103590280(-)$1	315	154	180	11.1529
cugucuaaugagauuuucauuuuggu	chr9:37188896-37189117(+)$1	221	151	177	11.5206
GAUGCUAUCUGACUAGACAGACAGCU	chr6:137078474-137078792(-)$1	318	202	228	8.6879

#DB
((((((..(((.....)))...))))	chr11:61584587-61584837(+)$1	1	132	158	12.1364
((((.((((.(((...))).))).).	chr22:50624803-50625069(+)$1	1	48	74	8.3142
(.(((..((((.....))))..))).	chr7:1892258-1892524(-)$1	1	141	167	12.8412
(((.((((.(.....))))).)))).	chr1:145825735-145826035(-)$1	1	62	88	9.6584
((....(((((.....)))))...))	chr4:880117-880394(-)$1	1	48	74	12.9715
((....(((((.....))))).....	chr19:1173243-1173503(-)$1	1	210	236	10.2544
((.((((((((.....)))))))).)	chr1:27927489-27927715(-)$1	1	187	213	10.1152
(((((..((((.....))))))))).	chr16:81517759-81518026(+)$1	1	23	49	12.6822
(((((((((((.....))))))))))	chr20:57467336-57467585(+)$1	1	137	163	13.3540
((((((.(((......)))))))).)	chr9:130736483-130736743(-)$1	1	9	35	8.5557
(((((((((.(.....).))))))))	chr19:3100727-3100980(+)$1	1	188	214	12.9448
(((((.(((((.....))))).))))	chr19:2047927-2048213(-)$1	1	72	98	12.4860
(.(.(.(((((.....))))).).).	chr15:64753385-64753674(+)$1	1	120	146	13.1808
(((((.((((.....)))).))))).	chr16:88588979-88589275(+)$1	1	197	223	9.3746
((((.(((((......))))))))))	chr22:50871382-50871665(+)$1	1	142	168	8.4200
....(((((((.....)))))))...	chr16:2128063-2128336(+)$1	1	66	92	12.9264
(((((((((((...))))))))))))	chr22:45126818-45127149(+)$1	1	288	314	9.2066
(((.(((((((.....))))))).))	chr17:3830297-3830552(-)$1	1	3	29	12.7003
).)))((((((.....))))))((((	chr1:227162069-227162342(+)$1	1	121	147	10.5409
(((.....(((.....)))...))))	chr16:87881957-87882190(-)$1	1	113	139	11.3873
..(.(.(.(.(.....).).).).).	chr15:40342813-40343090(+)$1	1	184	210	11.6266
.(((((((.((.....))..))).))	chr13:114144479-114144768(-)$1	1	69	95	10.0776
(((((.(((((.....))))))))))	chr14:105194744-105195000(+)$1	1	197	223	12.2518
(.((..(((.(.....).))))))))	chr11:66405541-66405783(+)$1	1	143	169	11.4846
((((((.((((.....)))).))).)	chr16:88522744-88523004(+)$1	1	147	173	11.2119
(((((((((.(.....).))))))))	chr17:7747742-7747987(+)$1	1	101	127	13.4982
.((((.(((.(.....).))).))))	chr22:32340730-32341024(+)$1	1	240	266	12.0697
((....((((.....))))...))).	chr4:52709246-52709500(+)$1	1	9	35	10.2079
(((..((.(((.....)))))..)))	chr12:22797951-22798254(+)$1	1	267	293	11.2034
....(((((((.....)))))))...	chr16:89041414-89041671(-)$1	1	49	75	12.1883
.(((..(((((.....)))))..)))	chr15:66885663-66885952(+)$1	1	185	211	12.5643
(((((((((((.....))).))))..	chr12:132402829-132403171(+)$1	1	279	305	11.9348
.(((((.(((......)))))))).)	chr2:64880512-64880821(-)$1	1	12	38	8.8098
(((((..((((.....))))))))))	chr2:159314925-159315185(+)$1	1	160	186	11.7608
.(((.((((((.....)))))))))(	chr17:8059078-8059341(-)$1	1	157	183	9.9771
(....((((((.....))))))))).	chr19:2047601-2047838(-)$1	1	176	202	10.3220
(((((..((((.....))))))))))	chr13:113986720-113987068(-)$1	1	250	276	12.8078
)))))))((((.....))))((((((	chr20:57415148-57415480(-)$1	1	80	106	12.1799
((((((..(((.....))))))).))	chr10:70092600-70092860(+)$1	1	208	234	11.7043
.((...(((((.....))))).))))	chr10:71921924-71922196(-)$1	1	218	244	12.1036
(.(((..((((.....))))..))).	chr19:52551634-52551931(-)$1	1	268	294	12.5267
(..((((((((((...))))))))))	chr1:16175827-16176082(+)$1	1	72	98	9.3630
.(((((((..(.....)..)))))))	chr5:302120-302367(+)$1	1	40	66	12.1923
(((.((((.((.....)).)))))))	chr19:55998234-55998499(+)$1	1	18	44	10.2517
(.(((((.(((.....))).)))))(	chr7:91762920-91763248(-)$1	1	105	131	10.4022
..(.(((((((.....))))))).))	chr5:39006661-39006916(-)$1	1	219	245	11.3336
..(((((.(((.....))).))))).	chr7:97916494-97916769(+)$1	1	185	211	12.6843
(((.(((..((.....))))).))).	chr19:3507620-3507900(+)$1	1	111	137	11.7788
((...((.(.(.....).).))..))	chr12:96793045-96793321(-)$1	1	19	45	11.1768
(((((..((((.....))))))))))	chr14:105251972-105252206(-)$1	1	19	45	11.7608
((((..(((((.(...).))))))))	chr21:45557189-45557411(+)$1	1	123	149	8.5738
(((((((.(((.....)))..))...	chr12:132540413-132540699(+)$1	1	2	28	10.9253
((.((((((((.....)))))))).)	chr7:150823835-150824088(+)$1	1	31	57	10.0537
(((.((.((((.....))))..)).)	chr10:103589965-103590280(-)$1	1	154	180	11.1529
(.....(((((.....)))))..)))	chr9:37188896-37189117(+)$1	1	151	177	11.5206
((.(((.((((......)))).))))	chr6:137078474-137078792(-)$1	1	202	228	8.6879

#PSSM
e : 0.26	c : 0.14	f : 0.12	d : 0.10	[ : 0.08	= : 0.05	i : 0.01	# : 0.01	% : 0.01	" : 0.01	F : 0.01	$ : 0.01	: : 0.01	g : 0.01	b : 0.01	A : 0.01	& : 0.01	! : 0.01	
e : 0.24	f : 0.12	c : 0.12	d : 0.10	[ : 0.07	= : 0.05	# : 0.03	b : 0.03	$ : 0.03	g : 0.03	! : 0.03	i : 0.01	] : 0.01	% : 0.01	: : 0.01	& : 0.01	
e : 0.24	c : 0.12	d : 0.10	f : 0.08	# : 0.08	[ : 0.05	= : 0.05	a : 0.05	b : 0.05	$ : 0.03	g : 0.03	i : 0.01	! : 0.01	" : 0.01	
e : 0.21	[ : 0.14	c : 0.12	# : 0.08	= : 0.07	d : 0.07	f : 0.05	$ : 0.05	h : 0.03	b : 0.03	g : 0.03	" : 0.03	i : 0.01	! : 0.01	
e : 0.14	d : 0.12	c : 0.10	g : 0.10	# : 0.07	= : 0.07	! : 0.07	f : 0.05	[ : 0.05	h : 0.03	a : 0.03	$ : 0.03	" : 0.03	b : 0.03	i : 0.01	
! : 0.16	[ : 0.10	d : 0.08	e : 0.08	g : 0.08	f : 0.07	= : 0.07	c : 0.07	b : 0.07	# : 0.05	h : 0.03	$ : 0.03	a : 0.01	i : 0.01	" : 0.01	
e : 0.21	! : 0.14	d : 0.10	c : 0.08	[ : 0.08	g : 0.08	= : 0.07	f : 0.05	b : 0.05	h : 0.03	i : 0.01	$ : 0.01	a : 0.01	
d : 0.26	e : 0.17	c : 0.10	[ : 0.10	g : 0.08	= : 0.07	! : 0.05	f : 0.05	h : 0.03	i : 0.01	$ : 0.01	
c : 0.23	d : 0.21	e : 0.17	= : 0.07	g : 0.07	[ : 0.05	f : 0.05	h : 0.03	a : 0.03	! : 0.03	i : 0.01	
d : 0.21	c : 0.17	e : 0.17	[ : 0.12	g : 0.07	= : 0.05	f : 0.05	b : 0.05	h : 0.03	a : 0.01	! : 0.01	
d : 0.17	c : 0.16	e : 0.16	a : 0.12	g : 0.07	n : 0.05	= : 0.05	o : 0.05	f : 0.05	b : 0.05	h : 0.03	
n : 0.85	o : 0.07	c : 0.01	l : 0.01	= : 0.01	[ : 0.01	
n : 0.85	o : 0.07	c : 0.01	l : 0.01	= : 0.01	a : 0.01	
n : 0.85	l : 0.07	o : 0.07	
n : 0.85	o : 0.07	l : 0.05	= : 0.01	
n : 0.80	o : 0.07	l : 0.05	d : 0.03	a : 0.01	= : 0.01	
d : 0.21	c : 0.19	e : 0.16	a : 0.14	g : 0.07	= : 0.05	f : 0.05	b : 0.05	h : 0.03	o : 0.01	
d : 0.23	c : 0.19	e : 0.16	] : 0.12	g : 0.07	= : 0.05	f : 0.05	b : 0.05	h : 0.03	2 : 0.01	
c : 0.24	d : 0.23	e : 0.17	= : 0.07	g : 0.07	f : 0.05	h : 0.03	a : 0.03	2 : 0.03	i : 0.01	] : 0.01	
d : 0.23	e : 0.21	] : 0.12	g : 0.08	= : 0.07	3 : 0.05	f : 0.05	c : 0.05	h : 0.03	2 : 0.03	i : 0.01	b : 0.01	
e : 0.28	g : 0.10	c : 0.08	= : 0.08	f : 0.08	2 : 0.07	d : 0.07	3 : 0.05	] : 0.03	h : 0.03	b : 0.03	i : 0.01	a : 0.01	
e : 0.16	] : 0.12	2 : 0.10	g : 0.10	= : 0.08	f : 0.08	3 : 0.07	d : 0.07	c : 0.05	b : 0.05	h : 0.03	6 : 0.01	i : 0.01	
c : 0.19	e : 0.17	d : 0.10	g : 0.10	= : 0.08	b : 0.07	2 : 0.07	f : 0.05	h : 0.03	a : 0.03	3 : 0.01	6 : 0.01	i : 0.01	
e : 0.19	c : 0.17	] : 0.12	f : 0.08	d : 0.08	= : 0.08	3 : 0.05	h : 0.03	g : 0.03	b : 0.03	6 : 0.01	i : 0.01	2 : 0.01	4 : 0.01	
c : 0.19	e : 0.16	f : 0.12	] : 0.10	= : 0.10	d : 0.08	a : 0.07	3 : 0.03	4 : 0.03	g : 0.03	6 : 0.01	i : 0.01	
f : 0.14	e : 0.14	] : 0.12	= : 0.10	d : 0.10	c : 0.07	g : 0.05	: : 0.03	3 : 0.03	b : 0.03	4 : 0.03	> : 0.01	6 : 0.01	i : 0.01	7 : 0.01	5 : 0.01	a : 0.01	

#score	628.4222938921446
#seq	56
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_transcript_m1_run2.txt

#BEAR
eccc####iiiiiiiiiooooooiiiiiiiii4444c	chr6:109699053-109699348(-)$1	295	21	58	16.0468
gggeeeee####ccc[bboooooobb]ccceeeee]g	chr9:130706871-130707120(-)$1	249	10	47	14.5383
==[a[eeeee!!a[bboooooobb]a333eeeee]a]	chr1:19671064-19671298(-)$1	234	166	203	15.3733
hhhhh$$$$$ccc[cccooooooccc22ccc333hhh	chr19:10916340-10916579(+)$1	239	130	167	14.9199
ddd::dddd[ccc[cccooooooccc]ccc]ddddcc	chr7:98941770-98942031(+)$1	261	154	191	14.3034
====ggggggg####bboooooobb22ggggggg:bb	chr16:1364167-1364379(+)$1	212	54	91	15.3200
!!eeeee!!dddd[ddddoooooodddd]dddd22ee	chr5:176860186-176860446(+)$1	260	59	96	12.2428
c####cccccc"""cccooooooccc]ccc]ccc333	chr1:43393359-43393631(-)$1	272	35	72	18.5865
eeeeeeeeee[bb[cccooooooccc]bb]eeeee33	chr1:12061882-12062158(+)$1	276	8	45	16.4964
c!!eeeee!!bb!!cccooooooccc22bb22eeeee	chr7:143000693-143000961(+)$1	268	191	228	16.2962
e"""ggggggg[a[cccooooooccc]a]ggggggge	chr3:139085521-139085767(-)$1	246	34	71	18.8579
d####===========lll===========4444ddd	chr1:142813168-142813435(+)$1	267	147	184	12.3436
g####eeeee[bb[cccooooooccc]bb]eeeee44	chr1:21937983-21938248(-)$1	265	42	79	16.9492
f[ffffff[a[ccc[aooooooaccc]affffff]ff	chr5:157221846-157222123(-)$1	277	55	92	15.0190
dddd:eeeee!!a[cccooooooccca22eeeee:GG	chr19:6216814-6217106(-)$1	292	197	234	13.5624
dddd[ffffff[a[cccooooooccca]ffffff333	chr1:28598079-28598331(+)$1	252	183	220	16.7526
!eeeee[ggggggg[acccmmmmccc]a]ggggggg]	chrX:153176191-153176455(-)$1	264	100	137	13.0575
cc[eeeee####eeeeeooooooeeeeeeeeeecccb	chr1:52551667-52551992(+)$1	325	85	122	13.1124
ffffff"""ccc!!cccnnnnnccccccffffff]ee	chr21:40622726-40622968(-)$1	242	106	143	12.1215
=================oooooo==============	chr22:19341530-19341778(-)$1	248	47	84	17.8433
a[bb[ggggggg[cccrrrrrrrrrccc]gggggggb	chr19:55671106-55671374(+)$1	268	81	118	12.0463
h:iiiiiiiii[a!!cccmmmmccc22a]iiiiiiii	chr11:46822696-46822962(-)$1	266	84	121	12.5992
iiiiiiii!!gggggggooooooggggggg8888888	chr7:99048174-99048402(+)$1	228	112	149	13.1285
Feeeee[dddd[a[cccooooooccc]adddd]eeee	chr2:27258312-27258538(+)$1	226	169	206	15.9412
:::dddd!!ccc!!cccooooooccc22ccc]ddddf	chrX:153579321-153579580(-)$1	259	32	69	13.7846
iiiiiii[==========nnnnn==========iiii	chr16:22262295-22262622(+)$1	327	15	52	13.9288
bb[ccc####ccc[ccclllcccccc22ccc]bb]cc	chr19:10922726-10922987(+)$1	261	166	203	12.3456
ee"""dddd!!ffffffooooooffffffdddd4444	chr12:123247243-123247637(+)$1	394	328	365	13.3498
gg]a::ggggggg[cccooooooccc]ggggggg:::	chr2:187365843-187366097(+)$1	254	174	211	13.1826
c[dddd[adddd"""bboooooobb4444dddd]a]d	chr7:75044012-75044290(+)$1	278	224	261	14.7969
hhhhhhggggggg[cccooooooccc]ggggggg666	chr17:46048574-46048851(+)$1	277	225	262	16.1575
((eeeee"""ccc[cccoooooocccccc]eeeeebb	chr9:139358094-139358360(-)$1	266	81	118	15.4328
===ccc[ffffff[a[cccmmmmccc]a]ffffff33	chr1:235490309-235490575(-)$1	266	141	178	12.6126
b[ccc==========rrrrrrrrr==========]cc	chr7:128034136-128034417(-)$1	281	183	220	13.2293
fffff[===========oooooo===========22f	chr1:19500037-19500270(-)$1	233	33	70	16.5699
ddiiiiiiiii"""cccooooooccciiiiiiiii77	chr4:39924225-39924482(-)$1	257	179	216	17.3897
eeeeggggggg####cccnnnnnccc333ggggggg:	chr19:3982415-3982652(-)$1	237	97	134	13.8327
::ggggggg[a[ddddoooooodddd]a]ggggggg:	chr7:127724614-127724907(+)$1	293	213	250	11.9980
eee!!ffffff####bboooooobb4444ffffffee	chrX:153197485-153197758(-)$1	273	110	147	15.3004
#a"""==========qqqqqqqq==========333a	chr12:6691982-6692244(-)$1	262	141	178	12.2128
ggggggeeeeeccc!!aooooooa22ccc]eeeeebb	chr19:3448857-3449126(+)$1	269	150	187	14.0469
ffff[ccc!!ccc[aooooooa]ccc22ccc]fffff	chr5:65454890-65455169(+)$1	279	198	235	14.0921
b"""bb[bb[ccc[cccooooooccc]ccc]bb]bb2	chr19:15507991-15508234(-)$1	243	133	170	15.7437
d!!eeeeeccc[ccc[cccmmmmccc]ccc]ccc22e	chr6:35391527-35391834(+)$1	307	135	172	12.5802
::dddd[ffffff[cccooooooccc]ffffffdddd	chr8:95549245-95549545(-)$1	300	61	98	13.7225
ggggggg!!bb[ccc[bboooooobb]cccbbggggg	chr8:145114597-145114839(-)$1	242	136	173	13.8640
i!!ggggggg"""bb[cccmmmmccc]bb4444gggg	chr10:112334955-112335244(+)$1	289	62	99	12.2179
dd####dddd####cccooooooccc333dddd333d	chr14:35497142-35497374(+)$1	232	181	218	17.2673
hhhhhhhcccccc!!bboooooobb4444ccc]ccc]	chr22:20093535-20093776(+)$1	241	17	54	14.8111
ccc[ggggggg"""cccooooooccc4444ggggggg	chr1:85128058-85128314(-)$1	256	195	232	18.4613
[a[eeeeedddd!!cccoooooocccdddd]eeeeea	chr19:41175806-41176087(-)$1	281	110	147	15.6557
::dddd[ffffff!!bboooooobb4444ffffff]d	chr22:22328733-22329007(-)$1	274	192	229	13.0506

#otherMatches

#Seq PSSM
UGGGUUUAACUUUAGGUCAAAACACCUAAAGUGGUUC	chr6:109699053-109699348(-)$1	295	21	58	16.0468
AUCGUGGAGAAGAUCGUGCAGAGCCAGGAUUUCACAG	chr9:130706871-130707120(-)$1	249	10	47	14.5383
GUGGACUGUGGAUGGGAAGGUGCCGGGAGCACAGAUG	chr1:19671064-19671298(-)$1	234	166	203	15.3733
CUCUGCCUCUACCUGUGGCUGCUCACUUGGUCCCCAG	chr19:10916340-10916579(+)$1	239	130	167	14.9199
GGGCUCCCAAGAGCGACCGCAUUGUCACUUGUGGGGC	chr7:98941770-98942031(+)$1	261	154	191	14.3034
UUCUUGGUGGUUUUGCUCAAACUAGAUGCCGCCACGC	chr16:1364167-1364379(+)$1	212	54	91	15.3200
CUCCCUGAAGGCUGGGCCGGGACAGGCCAGGUCGCCG	chr5:176860186-176860446(+)$1	260	59	96	12.2428
AUCCCCAGGCUUCCUGCCUUCUCGCAUAGCUCUGCUC	chr1:43393359-43393631(-)$1	272	35	72	18.5865
GAGGUGAGUCCUCUGAUUCUGGUAUCUGGCGAUUCUG	chr1:12061882-12062158(+)$1	276	8	45	16.4964
GAUCGUGGGGUUGACCAACAAGAUGGAAAGAACCACG	chr7:143000693-143000961(+)$1	268	191	228	16.2962
UAACCAGAAUUGUGUCAAUCAAAUGGGAAGGUUUUGA	chr3:139085521-139085767(-)$1	246	34	71	18.8579
AAUAAAGUACAUUCAAUGAUUGGAUGUACUCAUAUUA	chr1:142813168-142813435(+)$1	267	147	184	12.3436
GAGUAUUAGGGUGGGCUGAGCAGAGUGUAAUCUGACU	chr1:21937983-21938248(-)$1	265	42	79	16.9492
ACUUUUUGUGUGGCACUAAAAUGGCCUCCAGAAAUUA	chr5:157221846-157222123(-)$1	277	55	92	15.0190
CCCAGCCAGGCUGUGGCUCCCUCGCCCUCCCUGGGCU	chr19:6216814-6217106(-)$1	292	197	234	13.5624
CUGGCAGUGGUGAUGGGCCUGCACCCUGACUACUUUA	chr1:28598079-28598331(+)$1	252	183	220	16.7526
CGGGGGUGGGGGCUCGGGCAGAUGUCACCAGCUUCCU	chrX:153176191-153176455(-)$1	264	100	137	13.0575
AAUGACUAAUAUUAAAAUAAACUUUUUGUAGUCUUGG	chr1:52551667-52551992(+)$1	325	85	122	13.1124
UAUCCAUCAGUUCAGUAGUUAAUAUAACUGGGUAUUU	chr21:40622726-40622968(-)$1	242	106	143	12.1215
UGGCCUCUUUGCCAGCCUUCUCUGGUUGGCAAAGAGG	chr22:19341530-19341778(-)$1	248	47	84	17.8433
cuggacuccugggucugagggaggaggggcugggggc	chr19:55671106-55671374(+)$1	268	81	118	12.0463
UUUCCUUUUUACCCCCCUUUGUAGGUUGUUGGAAAGG	chr11:46822696-46822962(-)$1	266	84	121	12.5992
GAGGGGACAUCUAAGUGACCGGACACUUGGCUCUGCA	chr7:99048174-99048402(+)$1	228	112	149	13.1285
AGCCGGGAGCUACGUGGGAUCAUCCGAGGGCUGCUGG	chr2:27258312-27258538(+)$1	226	169	206	15.9412
CAGUGGCUCUCCCUCUUUAAACCAAGUUGGACGCCAG	chrX:153579321-153579580(-)$1	259	32	69	13.7846
GAUGCAGAGGGGUGGGGACGUCCUUCUUACCUCCUGC	chr16:22262295-22262622(+)$1	327	15	52	13.9288
UGGGGCACGGAGCGAGGUUCCCUGCUAAGCUGCGCGC	chr19:10922726-10922987(+)$1	261	166	203	12.3456
AUAUUACAGAAUUAACAUUUAUCUGUUAGCUGUUUAA	chr12:123247243-123247637(+)$1	394	328	365	13.3498
UAGUAUGUGCAUUCUUCAAGCAAGGACAGUGUACUAA	chr2:187365843-187366097(+)$1	254	174	211	13.1826
CCGCCCAGACAGAUCUGCAUGAACACCCACUGUACCG	chr7:75044012-75044290(+)$1	278	224	261	14.7969
GGCUGUCGGGGGGAGGCCUGUGCGUUGCCCCCUGUGU	chr17:46048574-46048851(+)$1	277	225	262	16.1575
CGGGCAGCAUCCGUGCCUGGGUUGGCCGGCCUGCCAG	chr9:139358094-139358360(-)$1	266	81	118	15.4328
GCCCCGAGUCGGCGUGUGAUGGUUCGGGGGCUGGCGC	chr1:235490309-235490575(-)$1	266	141	178	12.6126
GACCACCUGCAGCAGGGACAGAUGCUGCUGCAGGAUG	chr7:128034136-128034417(-)$1	281	183	220	13.2293
AAUUUAAAAUCAGGACUCUAUACAGUUCUGGUUUAAA	chr1:19500037-19500270(-)$1	233	33	70	16.5699
GUGAUGGAGUUACUCAAGAAUUAUUGGACUCCAUUCU	chr4:39924225-39924482(-)$1	257	179	216	17.3897
UCAUUUCUUCACUUUGACCAGAUGUCUACUGAAGAAA	chr19:3982415-3982652(-)$1	237	97	134	13.8327
CCCCCCUGUAGAGGGCUCCUAUGCCCCCCGCAGGGGA	chr7:127724614-127724907(+)$1	293	213	250	11.9980
AGGAGGAGGGGCAAGACCUGGACGUGCUACCCCUCCC	chrX:153197485-153197758(-)$1	273	110	147	15.3004
GCUCCCCGUAGGCCCAGUCGUAAGGGCCUGCGGAAUG	chr12:6691982-6692244(-)$1	262	141	178	12.2128
ACAGGCAUCUCGUCCCCGGUGAAGAAGACAGAGAUGG	chr19:3448857-3449126(+)$1	269	150	187	14.0469
CUGCUCCAACCAUGACAAGUCUGAUGCCUGGUGCAGG	chr5:65454890-65455169(+)$1	279	198	235	14.0921
CCCACUACAGAAAUUGCCAUGGAGCAUUUUGUGAAGA	chr19:15507991-15508234(-)$1	243	133	170	15.7437
GAUGUCAGAGGUGCUGGGGCCUGCCUGGGCUCCUUGC	chr6:35391527-35391834(+)$1	307	135	172	12.5802
AUCUAGCAUUUGAUUAUAUUAAAAUAUUUGAAUCUAG	chr8:95549245-95549545(-)$1	300	61	98	13.7225
UGGUCCCCAGGAGGCCGGCAUGCUCCUGCCCCGGGAC	chr8:145114597-145114839(-)$1	242	136	173	13.8640
AUUGAGGUGUGGGAAGUUAUAAAUAAGUUAUAAACAC	chr10:112334955-112335244(+)$1	289	62	99	12.2179
CACAGAUGGCAAAAUUGAACCAACAAAUGGCCAAAAU	chr14:35497142-35497374(+)$1	232	181	218	17.2673
UGGGUUCCUUGCAGAGUUGAGGUAUGAAGUGCUAGGC	chr22:20093535-20093776(+)$1	241	17	54	14.8111
UGAUAAAUGUAAUCAGACUUCCUUCUAUCCUGCAUUU	chr1:85128058-85128314(-)$1	256	195	232	18.4613
UGCGGCAGGGUCUGGGCCUGUUUGCUGACCUCUGUCC	chr19:41175806-41176087(-)$1	281	110	147	15.6557
ACGAGUACACUGGGACCUUUGCUGGCCAGCCAGUGCG	chr22:22328733-22329007(-)$1	274	192	229	13.0506

#DB
)(((....(((((((((......)))))))))....)	chr6:109699053-109699348(-)$1	1	21	58	16.0468
((((((((....(((.((......)).)))))))).)	chr9:130706871-130707120(-)$1	1	10	47	14.5383
((.(.(((((..(.((......)).)...))))).).	chr1:19671064-19671298(-)$1	1	166	203	15.3733
(((((.....(((.(((......)))..)))...)))	chr19:10916340-10916579(+)$1	1	130	167	14.9199
)))..((((.(((.(((......))).))).))))((	chr7:98941770-98942031(+)$1	1	154	191	14.3034
))))(((((((....((......))..))))))).((	chr16:1364167-1364379(+)$1	1	54	91	15.3200
..(((((..((((.((((......)))).))))..))	chr5:176860186-176860446(+)$1	1	59	96	12.2428
(....((((((...(((......))).))).)))...	chr1:43393359-43393631(-)$1	1	35	72	18.5865
((((((((((.((.(((......))).)).)))))..	chr1:12061882-12062158(+)$1	1	8	45	16.4964
(..(((((..((..(((......)))..))..)))))	chr7:143000693-143000961(+)$1	1	191	228	16.2962
(...(((((((.(.(((......))).).))))))))	chr3:139085521-139085767(-)$1	1	34	71	18.8579
(....(((((((((((...)))))))))))....)))	chr1:142813168-142813435(+)$1	1	147	184	12.3436
(....(((((.((.(((......))).)).)))))..	chr1:21937983-21938248(-)$1	1	42	79	16.9492
(.((((((.(.(((.(......)))).))))))).))	chr5:157221846-157222123(-)$1	1	55	92	15.0190
)))).(((((..(.(((......))))..))))).))	chr19:6216814-6217106(-)$1	1	197	234	13.5624
((((.((((((.(.(((......)))).))))))...	chr1:28598079-28598331(+)$1	1	183	220	16.7526
.(((((.(((((((.((((....))).).))))))).	chrX:153176191-153176455(-)$1	1	100	137	13.0575
((.(((((....(((((......))))))))))))))	chr1:52551667-52551992(+)$1	1	85	122	13.1124
((((((...(((..(((.....)))))))))))).))	chr21:40622726-40622968(-)$1	1	106	143	12.1215
(((((((((((((((((......))))))))))))))	chr22:19341530-19341778(-)$1	1	47	84	17.8433
(.((.(((((((.(((.........))).))))))))	chr19:55671106-55671374(+)$1	1	81	118	12.0463
).(((((((((.(..(((....)))..).))))))))	chr11:46822696-46822962(-)$1	1	84	121	12.5992
((((((((..(((((((......))))))).......	chr7:99048174-99048402(+)$1	1	112	149	13.1285
)(((((.((((.(.(((......))).))))).))))	chr2:27258312-27258538(+)$1	1	169	206	15.9412
...((((..(((..(((......)))..))).))))(	chrX:153579321-153579580(-)$1	1	32	69	13.7846
(((((((.((((((((((.....))))))))))))))	chr16:22262295-22262622(+)$1	1	15	52	13.9288
((.(((....(((.(((...))))))..))).)).))	chr19:10922726-10922987(+)$1	1	166	203	12.3456
((...((((..((((((......))))))))))....	chr12:123247243-123247637(+)$1	1	328	365	13.3498
)).)..(((((((.(((......))).)))))))...	chr2:187365843-187366097(+)$1	1	174	211	13.1826
(.((((.(((((...((......))....)))).).)	chr7:75044012-75044290(+)$1	1	224	261	14.7969
(((((((((((((.(((......))).)))))))...	chr17:46048574-46048851(+)$1	1	225	262	16.1575
..(((((...(((.(((......)))))).)))))))	chr9:139358094-139358360(-)$1	1	81	118	15.4328
((((((.((((((.(.(((....))).).))))))..	chr1:235490309-235490575(-)$1	1	141	178	12.6126
(.(((((((((((((.........)))))))))).))	chr7:128034136-128034417(-)$1	1	183	220	13.2293
(((((.(((((((((((......)))))))))))..)	chr1:19500037-19500270(-)$1	1	33	70	16.5699
(((((((((((...(((......))))))))))))..	chr4:39924225-39924482(-)$1	1	179	216	17.3897
))))(((((((....(((.....)))...))))))).	chr19:3982415-3982652(-)$1	1	97	134	13.8327
..(((((((.(.((((......)))).).))))))).	chr7:127724614-127724907(+)$1	1	213	250	11.9980
(((..((((((....((......))....))))))))	chrX:153197485-153197758(-)$1	1	110	147	15.3004
.(...((((((((((........))))))))))...)	chr12:6691982-6692244(-)$1	1	141	178	12.2128
))))))((((((((..(......)..))).)))))((	chr19:3448857-3449126(+)$1	1	150	187	14.0469
((((.(((..(((.(......).)))..))).)))))	chr5:65454890-65455169(+)$1	1	198	235	14.0921
(...((.((.(((.(((......))).))).)).)).	chr19:15507991-15508234(-)$1	1	133	170	15.7437
(..((((((((.(((.(((....))).))).)))..)	chr6:35391527-35391834(+)$1	1	135	172	12.5802
..((((.((((((.(((......))).))))))))))	chr8:95549245-95549545(-)$1	1	61	98	13.7225
(((((((..((.(((.((......)).))))))))))	chr8:145114597-145114839(-)$1	1	136	173	13.8640
(..(((((((...((.(((....))).))....))))	chr10:112334955-112335244(+)$1	1	62	99	12.2179
((....((((....(((......)))...))))...)	chr14:35497142-35497374(+)$1	1	181	218	17.2673
(((((((((((((..((......))....))).))).	chr22:20093535-20093776(+)$1	1	17	54	14.8111
(((.(((((((...(((......)))....)))))))	chr1:85128058-85128314(-)$1	1	195	232	18.4613
.(.(((((((((..(((......))))))).))))))	chr19:41175806-41176087(-)$1	1	110	147	15.6557
..((((.((((((..((......))....)))))).)	chr22:22328733-22329007(-)$1	1	192	229	13.0506

#PSSM
d : 0.13	e : 0.11	g : 0.09	c : 0.09	= : 0.07	h : 0.07	f : 0.07	: : 0.07	i : 0.05	b : 0.05	! : 0.03	a : 0.01	F : 0.01	( : 0.01	# : 0.01	[ : 0.01	
e : 0.11	d : 0.09	: : 0.09	g : 0.07	= : 0.07	! : 0.07	[ : 0.07	c : 0.05	h : 0.05	# : 0.05	f : 0.05	" : 0.03	i : 0.03	a : 0.03	b : 0.01	( : 0.01	
e : 0.13	d : 0.11	g : 0.07	[ : 0.07	# : 0.07	" : 0.07	f : 0.07	i : 0.07	c : 0.05	h : 0.05	= : 0.05	! : 0.05	b : 0.01	: : 0.01	] : 0.01	
e : 0.21	d : 0.11	c : 0.07	# : 0.07	" : 0.07	f : 0.07	i : 0.07	g : 0.07	h : 0.05	a : 0.03	= : 0.03	: : 0.01	b : 0.01	! : 0.01	[ : 0.01	
e : 0.19	g : 0.15	# : 0.09	[ : 0.07	i : 0.07	d : 0.07	h : 0.05	: : 0.05	f : 0.05	c : 0.05	" : 0.03	= : 0.01	! : 0.01	b : 0.01	
e : 0.24	g : 0.17	d : 0.11	c : 0.07	= : 0.07	f : 0.07	i : 0.07	# : 0.03	h : 0.03	$ : 0.01	: : 0.01	[ : 0.01	b : 0.01	
e : 0.23	g : 0.19	[ : 0.13	= : 0.09	d : 0.07	i : 0.07	f : 0.05	# : 0.03	c : 0.03	$ : 0.01	" : 0.01	h : 0.01	
e : 0.19	g : 0.19	f : 0.11	= : 0.09	d : 0.07	! : 0.05	c : 0.05	i : 0.05	# : 0.03	" : 0.03	$ : 0.01	[ : 0.01	a : 0.01	b : 0.01	
g : 0.19	d : 0.11	! : 0.11	= : 0.11	e : 0.09	f : 0.09	i : 0.05	# : 0.05	c : 0.05	" : 0.03	$ : 0.01	[ : 0.01	b : 0.01	
g : 0.17	= : 0.11	e : 0.09	d : 0.09	c : 0.09	f : 0.09	! : 0.07	i : 0.05	# : 0.05	[ : 0.05	$ : 0.01	a : 0.01	" : 0.01	b : 0.01	
c : 0.21	g : 0.17	= : 0.11	f : 0.09	d : 0.07	i : 0.05	# : 0.05	! : 0.05	[ : 0.05	b : 0.03	a : 0.01	e : 0.01	" : 0.01	
c : 0.21	[ : 0.13	# : 0.11	= : 0.11	g : 0.09	" : 0.07	f : 0.07	d : 0.05	b : 0.05	! : 0.03	i : 0.01	
c : 0.23	a : 0.11	= : 0.11	" : 0.09	# : 0.07	! : 0.07	g : 0.07	f : 0.07	d : 0.03	b : 0.03	i : 0.01	e : 0.01	[ : 0.01	
[ : 0.34	! : 0.13	c : 0.11	= : 0.11	# : 0.07	" : 0.07	g : 0.03	i : 0.01	e : 0.01	f : 0.01	d : 0.01	b : 0.01	
c : 0.49	= : 0.11	! : 0.07	# : 0.05	b : 0.03	d : 0.03	[ : 0.03	a : 0.03	i : 0.01	e : 0.01	g : 0.01	f : 0.01	" : 0.01	
c : 0.48	b : 0.11	[ : 0.09	= : 0.07	d : 0.03	a : 0.03	i : 0.01	e : 0.01	g : 0.01	f : 0.01	r : 0.01	q : 0.01	! : 0.01	o : 0.01	
c : 0.53	b : 0.13	o : 0.07	= : 0.05	r : 0.03	i : 0.01	d : 0.01	l : 0.01	e : 0.01	g : 0.01	f : 0.01	q : 0.01	a : 0.01	
o : 0.69	c : 0.11	b : 0.03	l : 0.03	r : 0.03	d : 0.01	n : 0.01	= : 0.01	q : 0.01	
o : 0.75	c : 0.07	n : 0.05	l : 0.03	r : 0.03	m : 0.01	q : 0.01	
o : 0.75	m : 0.09	n : 0.05	r : 0.03	= : 0.01	l : 0.01	q : 0.01	
o : 0.75	m : 0.09	n : 0.05	r : 0.03	= : 0.01	c : 0.01	q : 0.01	
o : 0.73	m : 0.09	n : 0.05	r : 0.03	= : 0.01	c : 0.01	q : 0.01	a : 0.01	
o : 0.67	m : 0.07	c : 0.05	r : 0.03	n : 0.03	b : 0.01	= : 0.01	a : 0.01	d : 0.01	q : 0.01	] : 0.01	
c : 0.57	b : 0.11	= : 0.09	o : 0.05	r : 0.03	i : 0.01	e : 0.01	g : 0.01	f : 0.01	d : 0.01	a : 0.01	
c : 0.57	b : 0.13	= : 0.11	d : 0.03	i : 0.01	] : 0.01	e : 0.01	r : 0.01	g : 0.01	f : 0.01	2 : 0.01	
c : 0.57	= : 0.11	4 : 0.07	2 : 0.05	b : 0.03	d : 0.03	i : 0.01	a : 0.01	e : 0.01	g : 0.01	f : 0.01	
] : 0.34	2 : 0.13	= : 0.11	4 : 0.09	c : 0.07	3 : 0.05	i : 0.03	d : 0.03	a : 0.03	e : 0.01	g : 0.01	f : 0.01	
c : 0.19	a : 0.13	2 : 0.11	= : 0.11	4 : 0.09	g : 0.07	3 : 0.05	b : 0.05	i : 0.03	d : 0.03	f : 0.03	] : 0.01	e : 0.01	
c : 0.23	] : 0.13	= : 0.11	f : 0.09	4 : 0.09	g : 0.07	b : 0.07	3 : 0.05	i : 0.03	d : 0.03	2 : 0.01	e : 0.01	
c : 0.21	g : 0.17	f : 0.13	d : 0.11	= : 0.11	] : 0.07	i : 0.05	e : 0.05	4 : 0.03	b : 0.01	
g : 0.17	e : 0.15	f : 0.13	c : 0.09	] : 0.09	d : 0.09	= : 0.09	i : 0.05	4 : 0.03	2 : 0.01	8 : 0.01	b : 0.01	
e : 0.17	g : 0.17	f : 0.13	d : 0.11	= : 0.09	i : 0.05	c : 0.05	] : 0.05	4 : 0.03	b : 0.03	3 : 0.01	2 : 0.01	8 : 0.01	
e : 0.19	g : 0.19	f : 0.15	d : 0.11	= : 0.09	4 : 0.05	c : 0.03	i : 0.03	] : 0.03	b : 0.03	3 : 0.01	8 : 0.01	
g : 0.21	e : 0.19	f : 0.13	c : 0.07	4 : 0.05	3 : 0.05	d : 0.05	= : 0.05	i : 0.05	] : 0.03	2 : 0.01	8 : 0.01	b : 0.01	
e : 0.15	g : 0.15	] : 0.09	d : 0.07	3 : 0.07	f : 0.07	: : 0.05	2 : 0.05	i : 0.05	4 : 0.03	c : 0.03	h : 0.01	= : 0.01	8 : 0.01	a : 0.01	6 : 0.01	b : 0.01	
g : 0.15	e : 0.11	3 : 0.11	c : 0.09	b : 0.07	4 : 0.05	] : 0.05	d : 0.05	f : 0.03	i : 0.03	2 : 0.03	a : 0.01	h : 0.01	G : 0.01	= : 0.01	8 : 0.01	: : 0.01	6 : 0.01	7 : 0.01	
e : 0.13	b : 0.09	d : 0.09	c : 0.07	g : 0.07	3 : 0.07	f : 0.07	] : 0.05	: : 0.05	4 : 0.03	i : 0.03	a : 0.03	h : 0.01	G : 0.01	= : 0.01	8 : 0.01	6 : 0.01	7 : 0.01	2 : 0.01	

#score	759.0980544001636
#seq	52
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_UTR_m2_run1.txt

#BEAR
eeeeeaccc[a!!bboooooobb22a]ccc]a]eeeee7	chr8:21995584-21995879(-)$1	295	108	147	13.8387
""dddd[bb!!ddddoooooodddd4444bb]dddd333	chr7:99564306-99564583(-)$1	277	226	265	17.5045
ggg[a[ccc!!ccc[aooooooaccccccaggggggg::	chr19:12841631-12841886(-)$1	255	70	109	13.5997
=====[ccc####cccnnnnnccc22ccc]=========	chr14:20925540-20925856(+)$1	316	28	67	13.3571
"dddd"""bb!!cccooooooccc22bb]dddd22ccce	chr7:150034757-150035037(+)$1	280	130	169	15.7383
c[dddd[ccc"""cccooooooccc333ccc22ddddcc	chr19:45422442-45422654(+)$1	212	41	80	16.5745
:ccc[eeeee[ddddoooooodddd333eeeee22cccc	chr17:38151667-38151881(+)$1	214	63	102	16.5812
dffffff!!a[a[bboooooobb]a]a22ffffff]ddd	chr11:1774032-1774249(-)$1	217	3	42	14.0393
eeeee[bb!!ccc[aooooooaccc]bb]eeeee22eee	chr7:127231369-127231658(+)$1	289	115	154	14.8997
=========[bbddddnnnnndddd333bb]========	chr2:20232486-20232716(-)$1	230	103	142	13.6179
gffffff####ddddoooooodddd4444ffffff]ggg	chr19:2426604-2426877(-)$1	273	82	121	17.0843
c"""a"""ddddddddnnnnndddd]dddd333a4444c	chr17:79674338-79674588(+)$1	250	71	110	13.0069
d!!eeeee[ffffffooooooffffff]eeeee22dddd	chr5:177576538-177576777(-)$1	239	108	147	12.9489
c"""eeeee"""bboooooobbeeeee333ccc]fffff	chr1:12035002-12035257(+)$1	255	95	134	13.3011
a[eeeee[cccddddoooooodddd333ccceeeee]a2	chr7:1199508-1199833(-)$1	325	92	131	17.4144
ggdddd[dddd!!bboooooobb4444dddddddd]ggg	chr19:1244298-1244586(+)$1	288	234	273	14.8152
hdddddddd!!ddddoooooodddd333dddd4444ddd	chr20:4168114-4168424(+)$1	310	54	93	18.5579
dddd[a!!a"""cccooooooccc22a22a]ddddgggg	chr9:127639125-127639392(+)$1	267	155	194	16.8856
gg[dddd####ddddooooooddddddddgggggggeee	chr19:50029402-50029661(+)$1	259	65	104	16.2226
dddd"""ccc[dddd[bblllbb]dddd]ccc4444ddd	chr12:122692756-122693081(-)$1	325	7	46	12.1959
eeee[ccca"""cccooooooccc55555a]ccceeeee	chr1:43392575-43392803(-)$1	228	24	63	14.0895
eeee"""eeeee[cccnnnnnccc4444eeeee333eee	chr4:155506354-155506594(-)$1	240	166	205	13.5459
!!a[dddd"""ddddrrrrrrrrrdddddddd]a22bb4	chr9:35814770-35815051(-)$1	281	34	73	12.7162
!!eeeee[bb[ddddoooooodddd]bb]eeeee333dd	chr14:99978433-99978720(-)$1	287	127	166	16.6864
ddd####cccddddqqqqqqqqdddd333ccc333dddd	chr19:18499709-18499937(+)$1	228	82	121	13.5543
ggg"""ccc!!cccrrrrrrrrrccccccggggggg22b	chr12:6979483-6979705(+)$1	222	118	157	12.5544
ddd!!a!!cccddddrrrrrrrrrdddd]ccc22a]ddd	chr16:88709638-88709871(-)$1	233	12	51	12.8493
cc[dddd"""cccrrrrrrrrrccc333dddd]ccc22b	chr19:45452392-45452601(+)$1	209	54	93	13.6206
ggggga[cccaccccccmmmmccc4444ccc]a]ccc]a	chr11:61557155-61557373(-)$1	218	95	134	12.5085
[eeeee[ccc[ddddmmmmdddd]ccceeeee333gggg	chr4:6643443-6643734(+)$1	291	199	238	11.7180
e[dddddddd[ddddoooooodddddddd]dddd]eeee	chr5:176730838-176731093(+)$1	255	136	175	15.2552
gggg!!ccc####bboooooobb666666cccggggggg	chr2:74687364-74687664(+)$1	300	108	147	14.4683
eee!!ccc[a[ddddoooooodddd]a]ccc]eeeee55	chr11:75112590-75112811(+)$1	221	144	183	15.6913
d[a"""ccc"""abboooooobb]a333ccc333adddd	chr17:4849046-4849259(-)$1	213	27	66	18.0044
!!dddd####eeeeeooooooeeeee333dddd22dddd	chr2:27599645-27599921(+)$1	276	228	267	16.6229
eeeee!!ddddssssssssssdddd4444eeeee333bb	chr19:45324398-45324676(+)$1	278	212	251	11.9628
bb"""ffffffddddoooooodddd333ffffff333bb	chr16:58147650-58147955(-)$1	305	229	268	15.9075
#dddddddd[eeeeeooooooeeeee22dddd]dddd44	chr17:79825681-79825954(-)$1	273	135	174	14.4209
[dddd!!ccc[ccc[aooooooa]ccc]ccc22dddd]d	chr19:39220772-39221085(+)$1	313	179	218	14.9738
dddd"""ccc"""cccooooooccccccdddd:::dddd	chr19:39306097-39306380(-)$1	283	86	125	12.5909
ffff[ccc"""bboooooobb]ccc333ffffff333a]	chr1:116947102-116947417(+)$1	315	58	97	13.6513
ggggeeeee[eeeeeooooooeeeee333eeeee]gggg	chr11:4114137-4114379(+)$1	242	189	228	15.3899
""a[dddd!!ddddqqqqqqqqdddd22dddd]a333dd	chr1:6520183-6520524(+)$1	341	275	314	12.7135
bb[ccc[a"""ddddoooooodddd22a]ccc]bb4444	chr1:228336277-228336571(+)$1	294	191	230	17.1451
iiiidddd[bbddddoooooodddd]bb22dddd]iiii	chr16:81009678-81010009(-)$1	331	102	141	14.9607
D:::ccc####ddddoooooodddd4444ccc:gggggg	chr15:69747728-69747955(+)$1	227	161	200	13.6772
===####dddd[aooooooa]dddd4444==========	chr19:583221-583455(+)$1	234	76	115	15.4191
cc[bb[a[ccc[cccooooooccc]ccc]abbccc]ccc	chr14:23389982-23390266(-)$1	284	33	72	14.2721
ddd[eeeee!!cccqqqqqqqqccc333eeeee22dddd	chr8:30040815-30041113(+)$1	298	220	259	12.7826

#otherMatches

#Seq PSSM
GCUCUGCCCUCUCCCUUCCCCGGUUGUGGGACAAGAGCC	chr8:21995584-21995879(-)$1	295	108	147	13.8387
UAGCAUAACAGAGAAUCCUUUUUUUAACGGUGAUGCGCU	chr7:99564306-99564583(-)$1	277	226	265	17.5045
CAGUGCGGUGACGAUGAUAAAACUCGGCCCCUGGUGAAA	chr19:12841631-12841886(-)$1	255	70	109	13.5997
UUGUCCCACUCUCUGUUACCUGCAUUGUGUGACAGCAAG	chr14:20925540-20925856(+)$1	316	28	67	13.3571
UCCCUCCACAUGCUGCAAGGACAGACUGAAGGGCUGUGA	chr7:150034757-150035037(+)$1	280	130	169	15.7383
AUGAGGACCUGAAGGGUGACAUCCCAGGAGGGGCCUCUG	chr19:45422442-45422654(+)$1	212	41	80	16.5745
AGAAGCUGCAGUUGGAUAGCCCCGAAGAUGCAGAGUUCA	chr17:38151667-38151881(+)$1	214	63	102	16.5812
CCGGGCCCGUUGAGGAUGAGGCCGCUAGAGGCCUGAGGA	chr11:1774032-1774249(-)$1	217	3	42	14.0393
GCUCCUGCCUGCAUGUUCUCUCUGUUGUUGGAGCCUGGA	chr7:127231369-127231658(+)$1	289	115	154	14.8997
CCCUGAGUACUUUCAGGAAGACUGACUUAAAUAUUCGGG	chr2:20232486-20232716(-)$1	230	103	142	13.6179
CCCCCUGCCAGCCAGUGCAGCUUGGAUCUCGGGGGUGUG	chr19:2426604-2426877(-)$1	273	82	121	17.0843
CGGACAGGCCGCACAGACCUACUGUGGCGGGAGGGAGGG	chr17:79674338-79674588(+)$1	250	71	110	13.0069
GCUGGCAGCAGGACGACUGGCUGUCCUCCUGCCCACCCA	chr5:177576538-177576777(-)$1	239	108	147	12.9489
CCAUUCACUUUUACUGCUUUGUAGUGACUCGUGCUCUCC	chr1:12035002-12035257(+)$1	255	95	134	13.3011
GUGCCUCCGACGGCGUCUCGGUGCCAGUGUCGAGGUUCU	chr7:1199508-1199833(-)$1	325	92	131	17.4144
CCGCGCCUGCCAAGGAGGCCACCAGAGGGCAGUGCAGGC	chr19:1244298-1244586(+)$1	288	234	273	14.8152
AGCUAGCCGCCCUGACUGCCUUCAGACCUGGCCCUGUAG	chr20:4168114-4168424(+)$1	310	54	93	18.5579
GGGAUUGACAAUGGACCAUCUUCCUAGGAACUCCCAAGU	chr9:127639125-127639392(+)$1	267	155	194	16.8856
GAAGGGGUUCUGGGCCUAGUUGUCCUCCCUCUGGAGCCC	chr19:50029402-50029661(+)$1	259	65	104	16.2226
CUGCAGGUGGAAGAGGUGCACCAGCUCUCCCGGAAAGCA	chr12:122692756-122693081(-)$1	325	7	46	12.1959
GAGCCAGCCAAAGUGACAAGACACCCGAGGAGCUGUUCC	chr1:43392575-43392803(-)$1	228	24	63	14.0895
AAUUCCUCUGAAACUCUAUUUGAGCUUAUUUAGUCAAAU	chr4:155506354-155506594(-)$1	240	166	205	13.5459
GAGUGCUGACCCGGGUGAGAGGUUCCCGCGGCUCAGGGA	chr9:35814770-35815051(-)$1	281	34	73	12.7162
CCCUUCCUGCCCUGGCGCCGUUUAGAGCUGGGAGCCCGU	chr14:99978433-99978720(-)$1	287	127	166	16.6864
CAGUUGUCCUGCCCUGUGGAAUGGGCUCAAGGUUCCUGA	chr19:18499709-18499937(+)$1	228	82	121	13.5543
AGCCCAGUAACUGCCCUUUCCCUGCAUAUGCUUCUGAUG	chr12:6979483-6979705(+)$1	222	118	157	12.5544
cgcAAGAAGCCCAGCGAGGAGGAGGCUGCGGUGGCGGCG	chr16:88709638-88709871(-)$1	233	12	51	12.8493
AGCACUUACACAGGCAUUUUUACUGACCAAGUUCUUUCU	chr19:45452392-45452601(+)$1	209	54	93	13.6206
AUCUACGUGUGAGCACCCAAGGGUAAGAGCUGCAAUGGG	chr11:61557155-61557373(-)$1	218	95	134	12.5085
UUGGGAAGUAAUUUUGUUUGAAAAUGCUCUCACAUACAG	chr4:6643443-6643734(+)$1	291	199	238	11.7180
UCGGCCGGGACGAUGGUGAAGUAUUUCCUGGGCCAGAGC	chr5:176730838-176731093(+)$1	255	136	175	15.2552
UCCUCCUCAUCCAGCUGCCCUGCCCACUUUGAAGGAACA	chr2:74687364-74687664(+)$1	300	108	147	14.4683
UGUAGUUCAGAAGAGGUUUGGCUUUCCAGAGGGCAGUGU	chr11:75112590-75112811(+)$1	221	144	183	15.6913
AUGAAAUGGCCUCCCACCUUCGGCGUUCCCAGUACUGAC	chr17:4849046-4849259(-)$1	213	27	66	18.0044
AUCUCCCUCUGGGCCGCUUCUGGCCUCUUGGAGCCAUGG	chr2:27599645-27599921(+)$1	276	228	267	16.6229
cuccgccccACCCCAUCAUCUGUGGACACUGGAGUCUGG	chr19:45324398-45324676(+)$1	278	212	251	11.9628
GUCCUGUGAGUGGCGCAUGAACGCUGGAGCUUAUUCCGC	chr16:58147650-58147955(-)$1	305	229	268	15.9075
CUGGCCUGGCGCCUGUUCCCCCAGGCUCUCAGUGCCACC	chr17:79825681-79825954(-)$1	273	135	174	14.4209
GGCCCCUUGCUGAUGCUCCUCCGGGUCUGCGUCGGGCGU	chr19:39220772-39221085(+)$1	313	179	218	14.9738
GAGAACAAGGAACUGAAAACCGUCACCUUCUCCAAGCUC	chr19:39306097-39306380(-)$1	283	86	125	12.5909
CUACCCUGGUAGGAAAGCACCGCAGCAUGUGGGGAAGCA	chr1:116947102-116947417(+)$1	315	58	97	13.6513
GGUGCUAGGCUGCAGACUGCCUUGUACUCCCUGGACACC	chr11:4114137-4114379(+)$1	242	189	228	15.3899
AUGCCGACUUACAUAUAUUUGCAUGUUCGUUGACUAUCA	chr1:6520183-6520524(+)$1	341	275	314	12.7135
GCAGGCGAUACGGCAGCUCUGUGCCCUUGGCCAGCAUGU	chr1:228336277-228336571(+)$1	294	191	230	17.1451
UCUCCAUAAUCCUUUGAAUGGAAAGUGACCUGUGAGAGA	chr16:81009678-81010009(-)$1	331	102	141	14.9607
UGUUGGUCUUGUCCAUAGUUUUGGAAUGUGCUCUGCAAA	chr15:69747728-69747955(+)$1	227	161	200	13.6772
UCCUUGUCUGUGCAUCCGGGGGCAGCUCUGGAGGGGGUU	chr19:583221-583455(+)$1	234	76	115	15.4191
CUGUGUGCGUUUCUGGCGAUGCAGCAAUUCCAAGAAGGU	chr14:23389982-23390266(-)$1	284	33	72	14.2721
AAAAAUGCUGAUAACAGGACCUUUAGUAAGCAUACUUUA	chr8:30040815-30041113(+)$1	298	220	259	12.7826

#DB
(((((((((.(..((......))..).))).).))))).	chr8:21995584-21995879(-)$1	1	108	147	13.8387
..((((.((..((((......))))....)).))))...	chr7:99564306-99564583(-)$1	1	226	265	17.5045
(((.(.(((..(((.(......)))))))))))))))..	chr19:12841631-12841886(-)$1	1	70	109	13.5997
(((((.(((....(((.....)))..))).)))))))))	chr14:20925540-20925856(+)$1	1	28	67	13.3571
.((((...((..(((......)))..)).))))..)))(	chr7:150034757-150035037(+)$1	1	130	169	15.7383
(.((((.(((...(((......)))...)))..))))))	chr19:45422442-45422654(+)$1	1	41	80	16.5745
.(((.(((((.((((......))))...)))))..)))(	chr17:38151667-38151881(+)$1	1	63	102	16.5812
(((((((..(.(.((......)).).)..)))))).)))	chr11:1774032-1774249(-)$1	1	3	42	14.0393
(((((.((..(((.(......)))).)).)))))..)))	chr7:127231369-127231658(+)$1	1	115	154	14.8997
(((((((((.((((((.....))))...)).))))))))	chr2:20232486-20232716(-)$1	1	103	142	13.6179
(((((((....((((......))))....)))))).)))	chr19:2426604-2426877(-)$1	1	82	121	17.0843
(...(...((((((((.....)))).))))...)....)	chr17:79674338-79674588(+)$1	1	71	110	13.0069
(..(((((.((((((......)))))).)))))..))))	chr5:177576538-177576777(-)$1	1	108	147	12.9489
(...(((((...((......)))))))...))).)))))	chr1:12035002-12035257(+)$1	1	95	134	13.3011
(.(((((.(((((((......))))...)))))))).).	chr7:1199508-1199833(-)$1	1	92	131	17.4144
((((((.((((..((......))....)))))))).)))	chr19:1244298-1244586(+)$1	1	234	273	14.8152
)((((((((..((((......))))...))))....)))	chr20:4168114-4168424(+)$1	1	54	93	18.5579
((((.(..(...(((......)))..)..).))))((((	chr9:127639125-127639392(+)$1	1	155	194	16.8856
((.((((....((((......)))))))))))))))(((	chr19:50029402-50029661(+)$1	1	65	104	16.2226
((((...(((.((((.((...)).)))).)))....)))	chr12:122692756-122693081(-)$1	1	7	46	12.1959
((((.((((...(((......))).....).))))))))	chr1:43392575-43392803(-)$1	1	24	63	14.0895
((((...(((((.(((.....)))....)))))...)))	chr4:155506354-155506594(-)$1	1	166	205	13.5459
..(.((((...((((.........)))))))).)..)).	chr9:35814770-35815051(-)$1	1	34	73	12.7162
..(((((.((.((((......)))).)).)))))...))	chr14:99978433-99978720(-)$1	1	127	166	16.6864
(((....(((((((........))))...)))...))))	chr19:18499709-18499937(+)$1	1	82	121	13.5543
(((...(((..(((.........)))))))))))))..)	chr12:6979483-6979705(+)$1	1	118	157	12.5544
(((..(..(((((((.........)))).)))..).)))	chr16:88709638-88709871(-)$1	1	12	51	12.8493
((.((((...(((.........)))...)))).)))..)	chr19:45452392-45452601(+)$1	1	54	93	13.6206
((((((.((((((((((....)))....))).).))).)	chr11:61557155-61557373(-)$1	1	95	134	12.5085
.(((((.(((.((((....)))).))))))))...))))	chr4:6643443-6643734(+)$1	1	199	238	11.7180
(.((((((((.((((......)))))))).)))).))))	chr5:176730838-176731093(+)$1	1	136	175	15.2552
((((..(((....((......))......))))))))))	chr2:74687364-74687664(+)$1	1	108	147	14.4683
(((..(((.(.((((......)))).).))).)))))..	chr11:75112590-75112811(+)$1	1	144	183	15.6913
(.(...(((...(((......)).)...)))...)))))	chr17:4849046-4849259(-)$1	1	27	66	18.0044
..((((....(((((......)))))...))))..))))	chr2:27599645-27599921(+)$1	1	228	267	16.6229
(((((..((((..........))))....)))))...))	chr19:45324398-45324676(+)$1	1	212	251	11.9628
((...((((((((((......))))...))))))...))	chr16:58147650-58147955(-)$1	1	229	268	15.9075
.((((((((.(((((......)))))..)))).))))..	chr17:79825681-79825954(-)$1	1	135	174	14.4209
.((((..(((.(((.(......).))).)))..)))).)	chr19:39220772-39221085(+)$1	1	179	218	14.9738
((((...(((...(((......))))))))))...((((	chr19:39306097-39306380(-)$1	1	86	125	12.5909
((((.(((...((......)).)))...))))))...).	chr1:116947102-116947417(+)$1	1	58	97	13.6513
(((((((((.(((((......)))))...))))).))))	chr11:4114137-4114379(+)$1	1	189	228	15.3899
..(.((((..((((........))))..)))).)...))	chr1:6520183-6520524(+)$1	1	275	314	12.7135
((.(((.(...((((......))))..).))).))....	chr1:228336277-228336571(+)$1	1	191	230	17.1451
((((((((.((((((......)))).))..)))).))))	chr16:81009678-81010009(-)$1	1	102	141	14.9607
)...(((....((((......))))....))).((((((	chr15:69747728-69747955(+)$1	1	161	200	13.6772
(((....((((.(......).))))....))))))))))	chr19:583221-583455(+)$1	1	76	115	15.4191
((.((.(.(((.(((......))).))).)))))).)))	chr14:23389982-23390266(-)$1	1	33	72	14.2721
(((.(((((..(((........)))...)))))..))))	chr8:30040815-30041113(+)$1	1	220	259	12.7826

#PSSM
d : 0.18	g : 0.16	e : 0.14	c : 0.10	" : 0.06	= : 0.06	! : 0.06	[ : 0.04	b : 0.04	: : 0.02	a : 0.02	h : 0.02	# : 0.02	f : 0.02	i : 0.02	D : 0.02	
d : 0.20	e : 0.14	g : 0.14	" : 0.08	[ : 0.08	! : 0.08	= : 0.06	c : 0.06	f : 0.06	b : 0.04	i : 0.02	: : 0.02	
d : 0.30	e : 0.18	g : 0.10	[ : 0.08	= : 0.06	f : 0.06	" : 0.06	a : 0.06	c : 0.02	! : 0.02	i : 0.02	: : 0.02	
d : 0.28	e : 0.18	" : 0.10	[ : 0.08	f : 0.06	g : 0.06	= : 0.04	c : 0.04	# : 0.04	! : 0.04	i : 0.02	: : 0.02	b : 0.02	
d : 0.28	e : 0.20	" : 0.12	[ : 0.08	! : 0.06	a : 0.04	= : 0.04	f : 0.04	# : 0.04	c : 0.04	g : 0.02	b : 0.02	
d : 0.24	e : 0.16	" : 0.14	c : 0.10	a : 0.08	[ : 0.08	f : 0.06	! : 0.06	# : 0.04	= : 0.02	
c : 0.20	d : 0.16	e : 0.14	[ : 0.12	" : 0.10	! : 0.08	f : 0.06	# : 0.06	b : 0.02	= : 0.02	a : 0.02	
c : 0.32	d : 0.18	e : 0.12	# : 0.08	" : 0.06	! : 0.06	[ : 0.06	b : 0.04	= : 0.02	f : 0.02	a : 0.02	
c : 0.32	d : 0.14	e : 0.10	# : 0.08	" : 0.08	b : 0.06	! : 0.06	[ : 0.06	a : 0.04	= : 0.02	f : 0.02	
c : 0.20	" : 0.16	! : 0.14	# : 0.12	d : 0.10	[ : 0.08	b : 0.06	e : 0.04	a : 0.04	f : 0.04	
" : 0.18	[ : 0.16	! : 0.12	d : 0.12	# : 0.10	c : 0.10	e : 0.08	a : 0.04	b : 0.04	f : 0.04	
d : 0.40	c : 0.14	" : 0.12	e : 0.08	! : 0.06	# : 0.04	b : 0.04	[ : 0.04	a : 0.02	f : 0.02	s : 0.02	
d : 0.42	c : 0.22	e : 0.06	! : 0.04	# : 0.04	" : 0.04	[ : 0.04	b : 0.04	a : 0.04	f : 0.02	s : 0.02	
d : 0.42	c : 0.26	b : 0.12	e : 0.06	o : 0.04	[ : 0.02	f : 0.02	r : 0.02	s : 0.02	
d : 0.38	c : 0.18	b : 0.10	o : 0.06	q : 0.06	e : 0.06	[ : 0.04	r : 0.04	a : 0.02	f : 0.02	s : 0.02	
o : 0.61	c : 0.10	r : 0.08	q : 0.06	a : 0.04	d : 0.04	[ : 0.02	m : 0.02	s : 0.02	
o : 0.69	n : 0.08	r : 0.08	q : 0.06	b : 0.02	c : 0.02	m : 0.02	s : 0.02	
o : 0.69	n : 0.08	r : 0.08	q : 0.06	m : 0.04	b : 0.02	s : 0.02	
o : 0.69	n : 0.08	r : 0.08	q : 0.06	m : 0.04	l : 0.02	s : 0.02	
o : 0.65	n : 0.08	r : 0.08	q : 0.06	l : 0.02	m : 0.02	d : 0.02	s : 0.02	b : 0.02	a : 0.02	
o : 0.63	n : 0.08	r : 0.08	q : 0.06	b : 0.04	l : 0.02	m : 0.02	d : 0.02	s : 0.02	] : 0.02	
d : 0.36	b : 0.14	c : 0.14	o : 0.08	r : 0.08	q : 0.06	e : 0.06	a : 0.02	f : 0.02	] : 0.02	
d : 0.40	c : 0.26	b : 0.12	e : 0.08	r : 0.06	a : 0.04	f : 0.02	
d : 0.38	c : 0.30	] : 0.10	e : 0.08	r : 0.04	2 : 0.02	f : 0.02	4 : 0.02	6 : 0.02	
d : 0.44	c : 0.20	2 : 0.08	e : 0.08	4 : 0.06	a : 0.04	f : 0.02	5 : 0.02	6 : 0.02	] : 0.02	
3 : 0.20	4 : 0.16	d : 0.14	c : 0.12	] : 0.12	2 : 0.08	e : 0.08	a : 0.02	f : 0.02	5 : 0.02	6 : 0.02	
3 : 0.26	4 : 0.16	c : 0.14	d : 0.12	b : 0.08	a : 0.06	2 : 0.06	] : 0.02	f : 0.02	e : 0.02	5 : 0.02	6 : 0.02	
3 : 0.28	4 : 0.14	d : 0.14	c : 0.12	b : 0.08	2 : 0.08	] : 0.06	5 : 0.02	e : 0.02	6 : 0.02	a : 0.02	
c : 0.20	d : 0.20	] : 0.14	4 : 0.10	e : 0.10	3 : 0.08	2 : 0.06	f : 0.04	b : 0.02	5 : 0.02	6 : 0.02	
c : 0.26	d : 0.20	e : 0.18	a : 0.08	f : 0.08	b : 0.04	] : 0.04	g : 0.04	3 : 0.02	2 : 0.02	= : 0.02	
c : 0.26	d : 0.22	e : 0.18	] : 0.08	f : 0.08	g : 0.06	b : 0.04	= : 0.04	3 : 0.02	
d : 0.24	e : 0.20	c : 0.16	f : 0.08	] : 0.06	g : 0.06	= : 0.06	2 : 0.04	3 : 0.04	a : 0.02	b : 0.02	
e : 0.20	d : 0.14	] : 0.12	g : 0.08	f : 0.08	3 : 0.08	= : 0.06	2 : 0.06	c : 0.06	4 : 0.04	: : 0.04	a : 0.02	
d : 0.16	e : 0.14	2 : 0.12	g : 0.10	f : 0.08	3 : 0.08	= : 0.06	a : 0.06	c : 0.06	] : 0.04	4 : 0.04	: : 0.02	b : 0.02	
3 : 0.16	2 : 0.14	d : 0.12	g : 0.10	e : 0.08	= : 0.06	f : 0.06	4 : 0.06	c : 0.06	] : 0.06	a : 0.04	: : 0.02	b : 0.02	
d : 0.20	g : 0.16	3 : 0.12	e : 0.10	] : 0.10	c : 0.08	4 : 0.08	= : 0.06	2 : 0.04	f : 0.02	i : 0.02	
d : 0.26	g : 0.16	e : 0.14	3 : 0.12	c : 0.08	= : 0.06	4 : 0.04	2 : 0.04	f : 0.02	] : 0.02	b : 0.02	i : 0.02	
d : 0.24	g : 0.14	e : 0.12	c : 0.08	= : 0.06	4 : 0.06	b : 0.06	a : 0.04	2 : 0.04	] : 0.04	3 : 0.02	: : 0.02	f : 0.02	5 : 0.02	i : 0.02	
d : 0.26	g : 0.14	e : 0.12	c : 0.08	b : 0.08	= : 0.06	4 : 0.06	7 : 0.02	3 : 0.02	: : 0.02	f : 0.02	2 : 0.02	a : 0.02	5 : 0.02	] : 0.02	i : 0.02	

#score	715.9386661382326
#seq	49
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_UTR_m1_run2.txt

#BEAR
eeeevvvvvvvvvvvvveeee	chr11:2159443-2159645(-)$1	202	57	78	24.2776
eeeeettttttttttteeeee	chr11:2152708-2152910(-)$1	202	150	171	24.3743
=====uuuuuuuuuuuu====	chr11:2152329-2152531(-)$1	202	98	119	24.2983
=====uuuuuuuuuuuu====	chr11:2152310-2152526(-)$1	216	93	114	24.2983
=====uuuuuuuuuuuu====	chr11:2152369-2152572(-)$1	203	139	160	24.2983
!!ddddtttttttttttdddd	chr12:104341372-104341590(+)$1	218	38	59	21.7669
"""bbuuuuuuuuuuuubb33	chr11:2153232-2153436(-)$1	204	150	171	22.8861
eeeyyyyyyyyyyyyyyyyee	chr21:46915746-46915996(+)$1	250	119	140	21.3924
=====uuuuuuuuuuuu====	chr11:2152389-2152591(-)$1	202	158	179	24.2983
eeeeettttttttttteeeee	chr11:2153580-2153790(-)$1	210	104	125	24.3743
eeeeettttttttttteeeee	chr11:2153595-2153806(-)$1	211	120	141	24.3743
=====uuuuuuuuuuuu====	chr11:2152355-2152559(-)$1	204	126	147	24.2983
eeeeettttttttttteeeee	chr11:2152646-2152848(-)$1	202	88	109	24.3743
=====uuuuuuuuuuuu====	chr11:2152386-2152589(-)$1	203	156	177	24.2983
"""bbuuuuuuuuuuuubb33	chr11:2153214-2153417(-)$1	203	131	152	22.8861
eeeeeuuuuuuuuuuuueeee	chr11:2153426-2153628(-)$1	202	178	199	25.1081
=====uuuuuuuuuuuu====	chr11:2152391-2152604(-)$1	213	171	192	24.2983
eeeeettttttttttteeeee	chr11:2152652-2152854(-)$1	202	94	115	24.3743
eeeeeuuuuuuuuuuuueeee	chr11:2153412-2153614(-)$1	202	164	185	25.1081
"""bbuuuuuuuuuuuubb33	chr11:2153196-2153400(-)$1	204	114	135	22.8861
dd[bbuuuuuuuuuuuubb]d	chr17:37076061-37076315(+)$1	254	53	74	22.6673
=====uuuuuuuuuuuu====	chr11:2152259-2152461(-)$1	202	28	49	24.2983
eeeeettttttttttteeeee	chr11:2152667-2152870(-)$1	203	110	131	24.3743
!!ddddtttttttttttdddd	chr11:2160218-2160430(-)$1	212	172	193	21.7669
eeeevvvvvvvvvvvvveeee	chr11:2159496-2159716(-)$1	220	128	149	24.2776
"""bbuuuuuuuuuuuubb33	chr11:2153191-2153396(-)$1	205	110	131	22.8861
hhhhhuuuuuuuuuuuuhhhh	chr22:38170088-38170353(+)$1	265	209	230	21.6115
eeeevvvvvvvvvvvvveeee	chr11:2159562-2159766(-)$1	204	178	199	24.2776
eeeeettttttttttteeeee	chr11:2152698-2152905(-)$1	207	145	166	24.3743
eeeeettttttttttteeeee	chr11:2154045-2154253(-)$1	208	146	167	24.3743
eeeeettttttttttteeeee	chr22:50297581-50297870(-)$1	289	180	201	24.3743
:dddduuuuuuuuuuuudddd	chr11:2160060-2160269(-)$1	209	65	86	21.6344
eeeeettttttttttteeeee	chr11:2152672-2152874(-)$1	202	114	135	24.3743
eeeeeuuuuuuuuuuuueeee	chr11:2153370-2153572(-)$1	202	122	143	25.1081
eeeeeuuuuuuuuuuuueeee	chr11:2153380-2153605(-)$1	225	155	176	25.1081
ee[bbuuuuuuuuuuuubb]e	chr13:113539143-113539400(+)$1	257	188	209	23.6172
=====uuuuuuuuuuuu====	chr11:2152404-2152610(-)$1	206	177	198	24.2983
eeeevvvvvvvvvvvvveeee	chr11:2159488-2159696(-)$1	208	108	129	24.2776
eeeeettttttttttteeeee	chr11:2152657-2152861(-)$1	204	101	122	24.3743
ff[ccctttttttttttcccf	chr11:2154257-2154466(-)$1	209	156	177	21.8657
eeeeeuuuuuuuuuuuueeee	chr11:2153292-2153497(-)$1	205	47	68	25.1081
=====uuuuuuuuuuuu====	chr11:2152334-2152542(-)$1	208	109	130	24.2983
eeeevvvvvvvvvvvvveeee	chr11:2159474-2159681(-)$1	207	93	114	24.2776
=====uuuuuuuuuuuu====	chr11:2152364-2152566(-)$1	202	133	154	24.2983
eeeeeuuuuuuuuuuuueeee	chr11:2153285-2153492(-)$1	207	42	63	25.1081
eeeeeuuuuuuuuuuuueeee	chr11:2153363-2153565(-)$1	202	115	136	25.1081
eeeevvvvvvvvvvvvveeee	chr11:2159551-2159762(-)$1	211	174	195	24.2776
eeeeeuuuuuuuuuuuueeee	chr11:2153344-2153546(-)$1	202	96	117	25.1081
eeeevvvvvvvvvvvvveeee	chr11:2159429-2159633(-)$1	204	45	66	24.2776
eeeeeuuuuuuuuuuuueeee	chr11:2153428-2153631(-)$1	203	181	202	25.1081
=====uuuuuuuuuuuu====	chr11:2152289-2152491(-)$1	202	58	79	24.2983
=====uuuuuuuuuuuu====	chr11:2152331-2152534(-)$1	203	101	122	24.2983
eeeeettttttttttteeeee	chr11:2152624-2152827(-)$1	203	67	88	24.3743
=====uuuuuuuuuuuu====	chr11:2152291-2152497(-)$1	206	64	85	24.2983
eeeeettttttttttteeeee	chr11:2152705-2152908(-)$1	203	148	169	24.3743
ee[bbuuuuuuuuuuuubb]e	chr13:113539260-113539520(+)$1	260	71	92	23.6172
"""bbuuuuuuuuuuuubb33	chr11:2153224-2153427(-)$1	203	141	162	22.8861
ff[ccctttttttttttcccf	chr11:2154140-2154356(-)$1	216	46	67	21.8657
eeeeeuuuuuuuuuuuueeee	chr11:2153277-2153479(-)$1	202	29	50	25.1081
eeeevvvvvvvvvvvvveeee	chr3:184107175-184107485(+)$1	310	161	182	24.2776
ff[ccctttttttttttcccf	chr11:2154191-2154400(-)$1	209	90	111	21.8657
eeeevvvvvvvvvvvvveeee	chr11:2159459-2159666(-)$1	207	78	99	24.2776
$$cccuuuuuuuuuuuuccc4	chr17:4618848-4619126(+)$1	278	207	228	22.5298
"""bbuuuuuuuuuuuubb33	chr11:2153189-2153391(-)$1	202	105	126	22.8861
ggggggtttttttttttgggg	chr12:123998052-123998270(-)$1	218	138	159	22.0423
eeeewwwwwwwwwwwwwweee	chr13:113539409-113539661(+)$1	252	93	114	22.7639
"""bbuuuuuuuuuuuubb33	chr11:2153261-2153466(-)$1	205	180	201	22.8861
hhhhhuuuuuuuuuuuuhhhh	chr22:24313656-24313883(-)$1	227	50	71	21.6115
eeeeettttttttttteeeee	chr11:2152629-2152834(-)$1	205	74	95	24.3743
fffffuuuuuuuuuuuuffff	chr21:46915384-46915654(+)$1	270	31	52	22.4535
eeeeettttttttttteeeee	chr11:2152616-2152818(-)$1	202	58	79	24.3743
ggg[auuuuuuuuuuuua]gg	chr6:71236263-71236655(+)$1	392	262	283	23.3693
ddddduuuuuuuuuuuudddd	chr11:2160070-2160290(-)$1	220	86	107	22.6450

#otherMatches

#Seq PSSM
UCGCACAUUCGGCCCCCGCGA	chr11:2159443-2159645(-)$1	202	57	78	24.2776
UCAUGCGCAGCACAUACAUGA	chr11:2152708-2152910(-)$1	202	150	171	24.3743
CACCCGUAGGGUGGGCGGGGU	chr11:2152329-2152531(-)$1	202	98	119	24.2983
CACCCGUAGGGUGGGCGGGGU	chr11:2152310-2152526(-)$1	216	93	114	24.2983
CACCCGUAGGGUGGGCGGGGU	chr11:2152369-2152572(-)$1	203	139	160	24.2983
GAAUCUACAGCUGAAAAAGAU	chr12:104341372-104341590(+)$1	218	38	59	21.7669
acagcacacacacaaacgcac	chr11:2153232-2153436(-)$1	204	150	171	22.8861
gcacacauacauauacacaug	chr21:46915746-46915996(+)$1	250	119	140	21.3924
CACCCGUAGGGUGGGCGGGGU	chr11:2152389-2152591(-)$1	202	158	179	24.2983
GAGUCAAAUUGGCCUGGACUU	chr11:2153580-2153790(-)$1	210	104	125	24.3743
GAGUCAAAUUGGCCUGGACUU	chr11:2153595-2153806(-)$1	211	120	141	24.3743
CACCCGUAGGGUGGGCGGGGU	chr11:2152355-2152559(-)$1	204	126	147	24.2983
UCAUGCGCAGCACAUACAUGA	chr11:2152646-2152848(-)$1	202	88	109	24.3743
CACCCGUAGGGUGGGCGGGGU	chr11:2152386-2152589(-)$1	203	156	177	24.2983
acagcacacacacaaacgcac	chr11:2153214-2153417(-)$1	203	131	152	22.8861
GCAUGAAAACCAAAAUCCAUG	chr11:2153426-2153628(-)$1	202	178	199	25.1081
CACCCGUAGGGUGGGCGGGGU	chr11:2152391-2152604(-)$1	213	171	192	24.2983
UCAUGCGCAGCACAUACAUGA	chr11:2152652-2152854(-)$1	202	94	115	24.3743
GCAUGAAAACCAAAAUCCAUG	chr11:2153412-2153614(-)$1	202	164	185	25.1081
acagcacacacacaaacgcac	chr11:2153196-2153400(-)$1	204	114	135	22.8861
ACGCAAGUGUGUGAGUGUGAG	chr17:37076061-37076315(+)$1	254	53	74	22.6673
CACCCGUAGGGUGGGCGGGGU	chr11:2152259-2152461(-)$1	202	28	49	24.2983
UCAUGCGCAGCACAUACAUGA	chr11:2152667-2152870(-)$1	203	110	131	24.3743
CUCGGGCCGCUCCCCUUUCCG	chr11:2160218-2160430(-)$1	212	172	193	21.7669
UCGCACAUUCGGCCCCCGCGA	chr11:2159496-2159716(-)$1	220	128	149	24.2776
acagcacacacacaaacgcac	chr11:2153191-2153396(-)$1	205	110	131	22.8861
GGGAGCCUGCCACCCUCUUCC	chr22:38170088-38170353(+)$1	265	209	230	21.6115
UCGCACAUUCGGCCCCCGCGA	chr11:2159562-2159766(-)$1	204	178	199	24.2776
UCAUGCGCAGCACAUACAUGA	chr11:2152698-2152905(-)$1	207	145	166	24.3743
CUGGGGCUUCUCCUGACCCAG	chr11:2154045-2154253(-)$1	208	146	167	24.3743
GCCGGGGACAGGCAUGCUGGC	chr22:50297581-50297870(-)$1	289	180	201	24.3743
CGCCUGUCCCCCUCCCGAGGC	chr11:2160060-2160269(-)$1	209	65	86	21.6344
UCAUGCGCAGCACAUACAUGA	chr11:2152672-2152874(-)$1	202	114	135	24.3743
GCAUGAAAACCAAAAUCCAUG	chr11:2153370-2153572(-)$1	202	122	143	25.1081
GCAUGAAAACCAAAAUCCAUG	chr11:2153380-2153605(-)$1	225	155	176	25.1081
CAAGCUCCUGcacacaugcau	chr13:113539143-113539400(+)$1	257	188	209	23.6172
CACCCGUAGGGUGGGCGGGGU	chr11:2152404-2152610(-)$1	206	177	198	24.2983
UCGCACAUUCGGCCCCCGCGA	chr11:2159488-2159696(-)$1	208	108	129	24.2776
UCAUGCGCAGCACAUACAUGA	chr11:2152657-2152861(-)$1	204	101	122	24.3743
GGAGGCCAAACGUCACCGUCC	chr11:2154257-2154466(-)$1	209	156	177	21.8657
GCAUGAAAACCAAAAUCCAUG	chr11:2153292-2153497(-)$1	205	47	68	25.1081
CACCCGUAGGGUGGGCGGGGU	chr11:2152334-2152542(-)$1	208	109	130	24.2983
UCGCACAUUCGGCCCCCGCGA	chr11:2159474-2159681(-)$1	207	93	114	24.2776
CACCCGUAGGGUGGGCGGGGU	chr11:2152364-2152566(-)$1	202	133	154	24.2983
GCAUGAAAACCAAAAUCCAUG	chr11:2153285-2153492(-)$1	207	42	63	25.1081
GCAUGAAAACCAAAAUCCAUG	chr11:2153363-2153565(-)$1	202	115	136	25.1081
UCGCACAUUCGGCCCCCGCGA	chr11:2159551-2159762(-)$1	211	174	195	24.2776
GCAUGAAAACCAAAAUCCAUG	chr11:2153344-2153546(-)$1	202	96	117	25.1081
UCGCACAUUCGGCCCCCGCGA	chr11:2159429-2159633(-)$1	204	45	66	24.2776
GCAUGAAAACCAAAAUCCAUG	chr11:2153428-2153631(-)$1	203	181	202	25.1081
CACCCGUAGGGUGGGCGGGGU	chr11:2152289-2152491(-)$1	202	58	79	24.2983
CACCCGUAGGGUGGGCGGGGU	chr11:2152331-2152534(-)$1	203	101	122	24.2983
UCAUGCGCAGCACAUACAUGA	chr11:2152624-2152827(-)$1	203	67	88	24.3743
CACCCGUAGGGUGGGCGGGGU	chr11:2152291-2152497(-)$1	206	64	85	24.2983
UCAUGCGCAGCACAUACAUGA	chr11:2152705-2152908(-)$1	203	148	169	24.3743
CAAGCUCCUGcacacaugcau	chr13:113539260-113539520(+)$1	260	71	92	23.6172
acagcacacacacaaacgcac	chr11:2153224-2153427(-)$1	203	141	162	22.8861
GGAGGCCAAACGUCACCGUCC	chr11:2154140-2154356(-)$1	216	46	67	21.8657
GCAUGAAAACCAAAAUCCAUG	chr11:2153277-2153479(-)$1	202	29	50	25.1081
CCCACCCCCACUACCUCUGGG	chr3:184107175-184107485(+)$1	310	161	182	24.2776
GGAGGCCAAACGUCACCGUCC	chr11:2154191-2154400(-)$1	209	90	111	21.8657
UCGCACAUUCGGCCCCCGCGA	chr11:2159459-2159666(-)$1	207	78	99	24.2776
CAGAGAUAAAGGAGCAGCUCA	chr17:4618848-4619126(+)$1	278	207	228	22.5298
acagcacacacacaaacgcac	chr11:2153189-2153391(-)$1	202	105	126	22.8861
GGCCUCUCGAGAGCACCGAGG	chr12:123998052-123998270(-)$1	218	138	159	22.0423
augcacauaUCAUGAACAGCG	chr13:113539409-113539661(+)$1	252	93	114	22.7639
acagcacacacacaaacgcac	chr11:2153261-2153466(-)$1	205	180	201	22.8861
CUUUUUCUCUGUCUCCUGAAG	chr22:24313656-24313883(-)$1	227	50	71	21.6115
UCAUGCGCAGCACAUACAUGA	chr11:2152629-2152834(-)$1	205	74	95	24.3743
UGGGGUCCUGCAGCUCCUCCC	chr21:46915384-46915654(+)$1	270	31	52	22.4535
UCAUGCGCAGCACAUACAUGA	chr11:2152616-2152818(-)$1	202	58	79	24.3743
AUAGUGCUAAAGGAUUGAGUG	chr6:71236263-71236655(+)$1	392	262	283	23.3693
CGCCUGUCCCCCUCCCGAGGC	chr11:2160070-2160290(-)$1	220	86	107	22.6450

#DB
((((.............))))	chr11:2159443-2159645(-)$1	1	57	78	24.2776
(((((...........)))))	chr11:2152708-2152910(-)$1	1	150	171	24.3743
(((((............))))	chr11:2152329-2152531(-)$1	1	98	119	24.2983
(((((............))))	chr11:2152310-2152526(-)$1	1	93	114	24.2983
(((((............))))	chr11:2152369-2152572(-)$1	1	139	160	24.2983
..((((...........))))	chr12:104341372-104341590(+)$1	1	38	59	21.7669
...((............))..	chr11:2153232-2153436(-)$1	1	150	171	22.8861
(((................))	chr21:46915746-46915996(+)$1	1	119	140	21.3924
(((((............))))	chr11:2152389-2152591(-)$1	1	158	179	24.2983
(((((...........)))))	chr11:2153580-2153790(-)$1	1	104	125	24.3743
(((((...........)))))	chr11:2153595-2153806(-)$1	1	120	141	24.3743
(((((............))))	chr11:2152355-2152559(-)$1	1	126	147	24.2983
(((((...........)))))	chr11:2152646-2152848(-)$1	1	88	109	24.3743
(((((............))))	chr11:2152386-2152589(-)$1	1	156	177	24.2983
...((............))..	chr11:2153214-2153417(-)$1	1	131	152	22.8861
(((((............))))	chr11:2153426-2153628(-)$1	1	178	199	25.1081
(((((............))))	chr11:2152391-2152604(-)$1	1	171	192	24.2983
(((((...........)))))	chr11:2152652-2152854(-)$1	1	94	115	24.3743
(((((............))))	chr11:2153412-2153614(-)$1	1	164	185	25.1081
...((............))..	chr11:2153196-2153400(-)$1	1	114	135	22.8861
((.((............)).)	chr17:37076061-37076315(+)$1	1	53	74	22.6673
(((((............))))	chr11:2152259-2152461(-)$1	1	28	49	24.2983
(((((...........)))))	chr11:2152667-2152870(-)$1	1	110	131	24.3743
..((((...........))))	chr11:2160218-2160430(-)$1	1	172	193	21.7669
((((.............))))	chr11:2159496-2159716(-)$1	1	128	149	24.2776
...((............))..	chr11:2153191-2153396(-)$1	1	110	131	22.8861
(((((............))))	chr22:38170088-38170353(+)$1	1	209	230	21.6115
((((.............))))	chr11:2159562-2159766(-)$1	1	178	199	24.2776
(((((...........)))))	chr11:2152698-2152905(-)$1	1	145	166	24.3743
(((((...........)))))	chr11:2154045-2154253(-)$1	1	146	167	24.3743
(((((...........)))))	chr22:50297581-50297870(-)$1	1	180	201	24.3743
.((((............))))	chr11:2160060-2160269(-)$1	1	65	86	21.6344
(((((...........)))))	chr11:2152672-2152874(-)$1	1	114	135	24.3743
(((((............))))	chr11:2153370-2153572(-)$1	1	122	143	25.1081
(((((............))))	chr11:2153380-2153605(-)$1	1	155	176	25.1081
((.((............)).)	chr13:113539143-113539400(+)$1	1	188	209	23.6172
(((((............))))	chr11:2152404-2152610(-)$1	1	177	198	24.2983
((((.............))))	chr11:2159488-2159696(-)$1	1	108	129	24.2776
(((((...........)))))	chr11:2152657-2152861(-)$1	1	101	122	24.3743
((.(((...........))))	chr11:2154257-2154466(-)$1	1	156	177	21.8657
(((((............))))	chr11:2153292-2153497(-)$1	1	47	68	25.1081
(((((............))))	chr11:2152334-2152542(-)$1	1	109	130	24.2983
((((.............))))	chr11:2159474-2159681(-)$1	1	93	114	24.2776
(((((............))))	chr11:2152364-2152566(-)$1	1	133	154	24.2983
(((((............))))	chr11:2153285-2153492(-)$1	1	42	63	25.1081
(((((............))))	chr11:2153363-2153565(-)$1	1	115	136	25.1081
((((.............))))	chr11:2159551-2159762(-)$1	1	174	195	24.2776
(((((............))))	chr11:2153344-2153546(-)$1	1	96	117	25.1081
((((.............))))	chr11:2159429-2159633(-)$1	1	45	66	24.2776
(((((............))))	chr11:2153428-2153631(-)$1	1	181	202	25.1081
(((((............))))	chr11:2152289-2152491(-)$1	1	58	79	24.2983
(((((............))))	chr11:2152331-2152534(-)$1	1	101	122	24.2983
(((((...........)))))	chr11:2152624-2152827(-)$1	1	67	88	24.3743
(((((............))))	chr11:2152291-2152497(-)$1	1	64	85	24.2983
(((((...........)))))	chr11:2152705-2152908(-)$1	1	148	169	24.3743
((.((............)).)	chr13:113539260-113539520(+)$1	1	71	92	23.6172
...((............))..	chr11:2153224-2153427(-)$1	1	141	162	22.8861
((.(((...........))))	chr11:2154140-2154356(-)$1	1	46	67	21.8657
(((((............))))	chr11:2153277-2153479(-)$1	1	29	50	25.1081
((((.............))))	chr3:184107175-184107485(+)$1	1	161	182	24.2776
((.(((...........))))	chr11:2154191-2154400(-)$1	1	90	111	21.8657
((((.............))))	chr11:2159459-2159666(-)$1	1	78	99	24.2776
..(((............))).	chr17:4618848-4619126(+)$1	1	207	228	22.5298
...((............))..	chr11:2153189-2153391(-)$1	1	105	126	22.8861
((((((...........))))	chr12:123998052-123998270(-)$1	1	138	159	22.0423
((((..............)))	chr13:113539409-113539661(+)$1	1	93	114	22.7639
...((............))..	chr11:2153261-2153466(-)$1	1	180	201	22.8861
(((((............))))	chr22:24313656-24313883(-)$1	1	50	71	21.6115
(((((...........)))))	chr11:2152629-2152834(-)$1	1	74	95	24.3743
(((((............))))	chr21:46915384-46915654(+)$1	1	31	52	22.4535
(((((...........)))))	chr11:2152616-2152818(-)$1	1	58	79	24.3743
(((.(............).))	chr6:71236263-71236655(+)$1	1	262	283	23.3693
)((((............))))	chr11:2160070-2160290(-)$1	1	86	107	22.6450

#PSSM
e : 0.52	= : 0.19	" : 0.09	f : 0.05	! : 0.02	d : 0.02	h : 0.02	g : 0.02	: : 0.01	$ : 0.01	
e : 0.52	= : 0.19	" : 0.09	f : 0.05	d : 0.04	! : 0.02	h : 0.02	g : 0.02	$ : 0.01	
e : 0.49	= : 0.19	" : 0.09	[ : 0.08	d : 0.05	h : 0.02	g : 0.02	c : 0.01	f : 0.01	
e : 0.47	= : 0.19	b : 0.13	d : 0.05	c : 0.05	h : 0.02	y : 0.01	g : 0.01	f : 0.01	[ : 0.01	
e : 0.34	= : 0.19	b : 0.13	v : 0.12	d : 0.05	c : 0.05	h : 0.02	y : 0.01	g : 0.01	w : 0.01	f : 0.01	a : 0.01	
u : 0.56	t : 0.20	v : 0.12	c : 0.04	d : 0.02	y : 0.01	g : 0.01	w : 0.01	
u : 0.56	t : 0.28	v : 0.12	y : 0.01	w : 0.01	
u : 0.56	t : 0.28	v : 0.12	y : 0.01	w : 0.01	
u : 0.56	t : 0.28	v : 0.12	y : 0.01	w : 0.01	
u : 0.56	t : 0.28	v : 0.12	y : 0.01	w : 0.01	
u : 0.56	t : 0.28	v : 0.12	y : 0.01	w : 0.01	
u : 0.56	t : 0.28	v : 0.12	y : 0.01	w : 0.01	
u : 0.56	t : 0.28	v : 0.12	y : 0.01	w : 0.01	
u : 0.56	t : 0.28	v : 0.12	y : 0.01	w : 0.01	
u : 0.56	t : 0.28	v : 0.12	y : 0.01	w : 0.01	
u : 0.56	t : 0.28	v : 0.12	y : 0.01	w : 0.01	
u : 0.56	e : 0.20	v : 0.12	t : 0.08	y : 0.01	w : 0.01	
e : 0.46	= : 0.19	b : 0.13	d : 0.05	c : 0.05	h : 0.02	y : 0.01	g : 0.01	w : 0.01	f : 0.01	a : 0.01	
e : 0.47	= : 0.19	b : 0.13	d : 0.05	c : 0.05	h : 0.02	y : 0.01	g : 0.01	f : 0.01	] : 0.01	
e : 0.49	= : 0.19	3 : 0.09	d : 0.05	c : 0.05	] : 0.04	h : 0.02	g : 0.02	f : 0.01	
e : 0.52	= : 0.19	3 : 0.09	d : 0.06	f : 0.05	h : 0.02	g : 0.02	4 : 0.01	

#score	1736.6630888035281
#seq	73
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_UTR_m3_run2.txt

#BEAR
ff####gggggggccc!!ccclllccc22ccc22gggggg	chr12:110719011-110719319(+)$1	308	132	172	12.8828
a[ggggggg"""dddd!!ddddllldddddddd]gggggg	chrX:152953545-152953898(+)$1	353	90	130	11.7943
hhhhhhh[ffffff[ccccccmmmmccc]cccffffff]h	chr2:236403051-236403335(+)$1	284	180	220	11.1557
ggggg"""ccc[ccc"""a[cccmmmmccca333ccc]cc	chr2:75061566-75061824(+)$1	258	161	201	12.6655
gggggg!!dddd!!ccceeeeennnnneeeee22ccc]dd	chr8:97506108-97506476(+)$1	368	252	292	10.8927
c[ddddbb[eeeee[bb!!bbnnnnnbb22bbeeeee]bb	chr17:77813034-77813322(-)$1	288	69	109	11.2267
d[ccc[bbccc[bb####cccnnnnnccc4444bbccc]b	chr11:118919429-118919699(-)$1	270	47	87	13.1687
eeeee!!bb$$$$$ccc!!bbnnnnnbb22cccbb22eee	chr12:76449712-76450044(-)$1	332	143	183	11.3753
[hhhhhhhh[a[ccc"""cccmmmmccc22ccc]ahhhhh	chr18:55711510-55711805(+)$1	295	50	90	11.8754
b]==============================[a[ccc""	chr18:60382867-60383187(+)$1	320	146	186	10.0576
ccc============"""bb[annnnna]bb333======	chr16:22385523-22385861(-)$1	338	168	208	13.9990
f[a[bb[abb[dddd!!cccnnnnnccc22dddd]bb]a]	chr6:117996575-117996882(+)$1	307	258	298	11.1745
========iiiiiiiii!!bbmmmmbb22iiiiiiiiicc	chr12:110719325-110719614(+)$1	289	19	59	14.1036
ggg[abb[ccc[ccc[ddddmmmmdddd]ccc22ccc22b	chr8:126010697-126010976(+)$1	279	103	143	10.6138
b[eeeee[ccc[bb!!eeeeennnnneeeee22bbccc]e	chr20:25371096-25371506(-)$1	410	43	83	11.2548
d[a[ccc####ccc[ccc[bbmmmmbb]ccc]ccc22ccc	chr17:16945976-16946284(+)$1	308	106	146	13.4385
[bb[ccc!!ffffff[bb[ddddlllddddbb]ffffff2	chr11:2152143-2152356(-)$1	213	73	113	10.6777
ccc[ggggggg####dddd[bbmmmmbbdddd22gggggg	chr2:11484261-11484599(-)$1	338	61	101	12.1482
eeee[==========!!cccooooooccc]==========	chr2:220408233-220408513(-)$1	280	111	151	14.0484
=============!!ffffffnnnnnffffff========	chr16:28222924-28223205(-)$1	281	177	217	13.5762
c"""ccc[ccc####ccc[bbmmmmbbcccccc]ccc333	chr11:2152419-2152629(-)$1	210	48	88	15.0278
g[ffffffccc!!eeeee[bbnnnnnbb]eeeee]ccc]f	chr2:232576499-232576757(+)$1	258	172	212	12.8313
!!dddd!!ddddcccccc[bblllbb]ccc]ccc]dddd2	chr15:99192099-99192343(+)$1	244	159	199	11.1412
[bb[ccc!!ffffff[bb[ddddlllddddbb]ffffff2	chr11:2152132-2152335(-)$1	203	52	92	10.6777
[ccc[a[bbbb[gggggggbboooooobb]ggggggg]bb	chr2:232577116-232577327(+)$1	211	13	53	11.5758
[ccc[bb[ccc[ffffff[bblllbb]ffffff333ccc]	chr15:72500985-72501335(-)$1	350	270	310	12.1804
cddddggggggg[eeeee[ddddllldddd22eeeee]gg	chr11:2152414-2152619(-)$1	205	105	145	10.1790
accc[ggggggg!!bb!!cccnnnnnccc22bb]gggggg	chr16:448868-449139(+)$1	271	28	68	13.8474
hhhh!!ccc[dddd[ccc[bblllbbcccddddccc22hh	chr6:170123811-170124179(-)$1	368	303	343	11.1323
a[a[ccc[ccccccdddd[bbnnnnnbbdddd22ccc]cc	chr19:531688-532046(+)$1	358	125	165	15.0006
dd!!ccc[bb[ccc!!eeeeemmmmeeeee22cccbbccc	chr9:139734512-139734761(+)$1	249	64	104	10.3612
eee[bb[a[ccc!!ddddcccnnnnnccc22dddd333cc	chr16:56459176-56459501(-)$1	325	184	224	12.7448
ff]ccc:ccc"""dddd!!bbmmmmbb22dddd333ccc:	chr1:16482276-16482659(-)$1	383	49	89	10.8474
"cccbb!!cccccc[bb[cccnnnnnccc22bb]ccc]cc	chr12:131356993-131357253(+)$1	260	138	178	13.8273
bb####ggggggg[accc[bbmmmmbb]ccc]a]gggggg	chr8:144815732-144816019(-)$1	287	64	104	13.1955
BBcccccc=============nnnnn=============2	chr19:14201101-14201392(-)$1	291	187	227	12.7839
b[dddd!!ccc####ccc!!bblllbb22ccc4444ccc4	chr22:19166061-19166345(-)$1	284	136	176	13.4316
b[eeeee!!ggggggg####bbmmmmbb333ggggggg]e	chr3:184044213-184044515(+)$1	302	5	45	12.2163
!!dddd[ccc####a"""cccnnnnnccc22a4444ccc]	chr19:3062203-3062528(-)$1	325	158	198	14.5640
fff####accc[ffffffcccmmmmccc4444ffffff]c	chrX:152953807-152954114(+)$1	307	79	119	11.6776
ccc!!ccc[ccc[bb!!cccnnnnnccc22bb22ccc]cc	chr9:35731968-35732270(-)$1	302	160	200	13.5780
#eeeee"""bb"""ddddcccmmmmccc]dddd4444bb]	chr6:41514174-41514529(+)$1	355	147	187	11.1334
!!a[gggggggbbdddd[cccmmmmcccdddd]bb]gggg	chr19:49458057-49458391(+)$1	334	173	213	11.7699
eeee[bb[bbbb!!a[bb[bblllbbbb]a]bb]bb]bb]	chr6:7910856-7911123(-)$1	267	57	97	10.7581
[bb[ccc!!ffffff[bb[ddddlllddddbb]ffffff2	chr11:2152135-2152343(-)$1	208	60	100	10.6777
gggggg:ffffff!!ffffffnnnnnffffff22ffffff	chr14:91976136-91976386(-)$1	250	61	101	10.3719
!eeeee[ggggggg"""a[bbmmmmbb]a]ggggggg]ee	chr19:1020848-1021214(-)$1	366	246	286	13.4625
dddccc[a[ccc"""ffffffnnnnnffffffccc]a]cc	chr9:117052403-117052629(+)$1	226	93	133	12.4589
ddddiiiiiiiii!!ccc[bbmmmmbbccciiiiiiiiiD	chrX:152913282-152913587(+)$1	305	147	187	12.7049
[a[eeeee[a[bb[bb[a[bbnnnnnbb]a]bb]bbaeee	chr19:1652274-1652550(-)$1	276	222	262	12.0634
gggg[bb####ccc[ccc[bbnnnnnbb333ccc]cccbb	chr4:76580159-76580533(-)$1	374	199	239	14.4203
ccc[ccc"""a[dddd!!bbmmmmbb22dddd]accc]cc	chr16:431824-432076(-)$1	252	90	130	10.8937
cddddggggggg[eeeee[ddddllldddd22eeeee]gg	chr11:2152407-2152614(-)$1	207	100	140	10.1790
d[a[ccc[ffffff[eeeeeooooooeeeeeffffff]cc	chr16:29817748-29817998(+)$1	250	155	195	11.0962
cc[iiiiiiiii####bb[bbnnnnnbb]bb]iiiiiiii	chr19:49994678-49994904(+)$1	226	148	188	14.6740
f[ccc[a[ccc[bb"""ddddnnnnndddd]bbccc]a]c	chr19:55628673-55629013(-)$1	340	87	127	12.9509
ee"""ddddccc!!ccc!!bbmmmmbb22ccc22ccc]dd	chr1:44444912-44445262(+)$1	350	164	204	12.8889
ccc[eeeee####eeeee[bbmmmmbbeeeeeeeeee]cc	chr12:6879227-6879482(+)$1	255	171	211	11.3767
$$ggggggg!!ccc"""cccqqqqqqqqccc333cccggg	chr14:53162292-53162577(-)$1	285	28	68	9.8811
ffffff[dddd[ccc[bb[bbmmmmbbbbccc22dddd]f	chr22:29279647-29279951(+)$1	304	86	126	10.7686
[bb[ccc!!ffffff[bb[ddddlllddddbb]ffffff2	chr11:2152086-2152299(-)$1	213	16	56	10.6777
##ffffff[a[bbccc[a[ccclllccc]a]ccc]bb]a]	chr10:88854294-88854545(-)$1	251	196	236	12.1037

#otherMatches

#Seq PSSM
GACCCGGGCGAGCGCGCCGCGCACCGCCCCGCCGGCUCGC	chr12:110719011-110719319(+)$1	308	132	172	12.8828
UGUCGCCCGCGCCCCGCUAGGCUGAGCCUCGGGUCGGGCG	chrX:152953545-152953898(+)$1	353	90	130	11.7943
cccgggggcUgcggcgccccgggcucggcggcccgcgggc	chr2:236403051-236403335(+)$1	284	180	220	11.1557
UGCCUACUUCUUCACGGAGCUCAACCAUGACCAAGUGCAG	chr2:75061566-75061824(+)$1	258	161	201	12.6655
GAGUCCCCGAGCCUGAGCCGCAAUCGCUGCGGUACUCUGC	chr8:97506108-97506476(+)$1	368	252	292	10.8927
CGCGGCCCGGGCUCAGUUGUCUGAGCGAGCGCGAGCCGGG	chr17:77813034-77813322(-)$1	288	69	109	11.2267
GAGAAUGUAGGAGGGCAGAGGCUUUUCCUGACACCCCUGA	chr11:118919429-118919699(-)$1	270	47	87	13.1687
AAGAUGAAGAAAAAGAAGACCCCAAAGGAAUUCCUGAAUU	chr12:76449712-76450044(-)$1	332	143	183	11.3753
aggcgcgggucgcggggagggAAAGCCCGGCCGGGUCUGC	chr18:55711510-55711805(+)$1	295	50	90	11.8754
cagcagcggcggccgcggcggcucuggcggcggcggccgg	chr18:60382867-60383187(+)$1	320	146	186	10.0576
CCCGGGGCAGCGGCUGAGGCGGGACGGCGGCGGGGGCCGC	chr16:22385523-22385861(-)$1	338	168	208	13.9990
AUGACGGGGCUGUACGAGCUGGUGUGGCGGGUGCUGCACG	chr6:117996575-117996882(+)$1	307	258	298	11.1745
GGGGAGGGAGGGUGGGUCAGGAGCCCCCAACCCGCCCUGC	chr12:110719325-110719614(+)$1	289	19	59	14.1036
UGGGGCCGCGCCGCGCUGGCGAGAGCCGCCGCCCGCGAGG	chr8:126010697-126010976(+)$1	279	103	143	10.6138
CUGGGCUGGGAUGUGAGGAGCGGCGGGUUCCGGGCUCCGG	chr20:25371096-25371506(-)$1	410	43	83	11.2548
CUGAGCCCCUAGCCCGCCGGGAGCGCCAGGCCGGCCAGGC	chr17:16945976-16946284(+)$1	308	106	146	13.4385
UACACCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGG	chr11:2152143-2152356(-)$1	213	73	113	10.6777
GACCGGCGGCGCGAAUCUGACUGAGGGGCGGGGACGCCGU	chr2:11484261-11484599(-)$1	338	61	101	12.1482
GCUCUGCUCUGCGGGGAGGGAgcgggcccgcccgcggggc	chr2:220408233-220408513(-)$1	280	111	151	14.0484
cugccugggcccgcagccucccccgcgggggucgggcccg	chr16:28222924-28223205(-)$1	281	177	217	13.5762
UCCCGCUAAGAUUCUCCAAUGUUUUCAUGGUCUGAGCCCC	chr11:2152419-2152629(-)$1	210	48	88	15.0278
gaggaggaagaagaagGUGAUGGUGAGUAGCCUUGUCUAU	chr2:232576499-232576757(+)$1	258	172	212	12.8313
CaggaggaggaggaggagggggagCCGCUCAUUCAUUUUG	chr15:99192099-99192343(+)$1	244	159	199	11.1412
UACACCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGG	chr11:2152132-2152335(-)$1	203	52	92	10.6777
ACCUGGCCUUUGAUUCUCUCCAGGUGAGGAAGAGGAUGGA	chr2:232577116-232577327(+)$1	211	13	53	11.5758
AUCCGCAAGGCAUCUGAUGUCCAUGAAGUUAGGAAGGUCC	chr15:72500985-72501335(-)$1	350	270	310	12.1804
CGGCCCUGUCUGUGCCCUGCCUCUCAGAGGAGGGGGCUCA	chr11:2152414-2152619(-)$1	205	105	145	10.1790
GCCUGGUGACCCCUGGGCUCUGGCUGGGAAACCCGGGUCG	chr16:448868-449139(+)$1	271	28	68	13.8474
CCCAGUCCCACCGGCGGCCGCCCAGCGUCUCGGGGGCGUG	chr6:170123811-170124179(-)$1	368	303	343	11.1323
ggcaggcggcggccccgguggcUCCCCCCCGGACGGUGCG	chr19:531688-532046(+)$1	358	125	165	15.0006
UUGAGCCACUGUCUGUCCUGUCUGUGCAGGUAAGGAGGGC	chr9:139734512-139734761(+)$1	249	64	104	10.3612
GGCGCCGUUCGCGAGGCCGCCGCAGAGGCCCGGCCGCAGC	chr16:56459176-56459501(-)$1	325	184	224	12.7448
UCACGCAGGGCAUGAAUGAACAGGAGUCGGUUCUCACCCA	chr1:16482276-16482659(-)$1	383	49	89	10.8474
CGCCGCGAUGGCUGCGCAGGGAGAGCCCCAGGUCCAGUUC	chr12:131356993-131357253(+)$1	260	138	178	13.8273
GCAGGGAGUGGCUGCCGGACCGACCGGACCGCGAGGCCGC	chr8:144815732-144816019(-)$1	287	64	104	13.1955
CCGGAGACGGCGGCGGCCGCCACCACGGCGGCCGCCGCCU	chr19:14201101-14201392(-)$1	291	187	227	12.7839
gggcgccccgccucccgcccgccaugcccgcgccccgcgc	chr22:19166061-19166345(-)$1	284	136	176	13.4316
UGGGCCAUUCACUACCUGUUUGGUUGCAUAUGGUGGUGCU	chr3:184044213-184044515(+)$1	302	5	45	12.2163
gggcgcgcggggagggggcgcaggaagcgggcgaggccgg	chr19:3062203-3062528(-)$1	325	158	198	14.5640
ccgucccccggcccggccgccccccggcccccggccggcc	chrX:152953807-152954114(+)$1	307	79	119	11.6776
ggcgggccggcgggcggggcgcagagccaggcagcgcagg	chr9:35731968-35732270(-)$1	302	160	200	13.5780
gcccgggagccggagcgagCUGACGAGCGUCGCGGAAGGA	chr6:41514174-41514529(+)$1	355	147	187	11.1334
ggcagacgggcgggaggagggcgagCCCCCUCGCCGGCCC	chr19:49458057-49458391(+)$1	334	173	213	11.7699
ggcgggcgcugcgaggggaccggaggccgcggcgagagcg	chr6:7910856-7911123(-)$1	267	57	97	10.7581
UACACCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGG	chr11:2152135-2152343(-)$1	208	60	100	10.6777
GAGCAGGGCAGUGACGGGAGCCCCGAGUUCCUAGCGCUGC	chr14:91976136-91976386(-)$1	250	61	101	10.3719
ccggggcccgggcccaacggcggcggcggcggcccggccc	chr19:1020848-1021214(-)$1	366	246	286	13.4625
CCCCCAGGGCCUGCAGGGGCUGCCAGGGCCCCGGGGCGUG	chr9:117052403-117052629(+)$1	226	93	133	12.4589
GCCUGUGGCUGCGUCGGGAGCUGUCGCCCCCGCGGCCGCG	chrX:152913282-152913587(+)$1	305	147	187	12.7049
acgcgccgcgugcccggccgcgcccagcaggugagcccgg	chr19:1652274-1652550(-)$1	276	222	262	12.0634
GGAGAAGAACUUAGAAGAACUAGAGGAGAAAUCUACUACU	chr4:76580159-76580533(-)$1	374	199	239	14.4203
CGGGCGGAAGUGCCCGGGGCGACGGCGGCGGGGACCGGCC	chr16:431824-432076(-)$1	252	90	130	10.8937
CGGCCCUGUCUGUGCCCUGCCUCUCAGAGGAGGGGGCUCA	chr11:2152407-2152614(-)$1	207	100	140	10.1790
gccAUGCGUUcggcgcggcccagcccggccggccgggggc	chr16:29817748-29817998(+)$1	250	155	195	11.0962
AGGGGGGCAUCUCACUCCUGGACAGGCCUGGCAGGUGCCU	chr19:49994678-49994904(+)$1	226	148	188	14.6740
CGGGCGGGCGGUGCGAUGUCCGGAGAGGAUGGCCcggcgg	chr19:55628673-55629013(-)$1	340	87	127	12.9509
gggaggcggcggggccgggccAUGGGGGACGGAACCGUCC	chr1:44444912-44445262(+)$1	350	164	204	12.8889
GCUGGGCCUGAGGGGCUGUCAGGGAUGCAGCCGGGCUGGG	chr12:6879227-6879482(+)$1	255	171	211	11.3767
UGCGUCUCCAggccgggggcgucagggagccgggggcggg	chr14:53162292-53162577(-)$1	285	28	68	9.8811
gcgcccucccgccgcAGGACCAUGAGGCCGCGCUCGGGCG	chr22:29279647-29279951(+)$1	304	86	126	10.7686
UACACCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGG	chr11:2152086-2152299(-)$1	213	16	56	10.6777
CGCGAGGACGACCCCAACUUCUUCAAGAUGGUGGAGGGCU	chr10:88854294-88854545(-)$1	251	196	236	12.1037

#DB
((....((((((((((..(((...)))..)))..))))))	chr12:110719011-110719319(+)$1	1	132	172	12.8828
(.(((((((...((((..((((...)))))))).))))))	chrX:152953545-152953898(+)$1	1	90	130	11.7943
(((((((.((((((.((((((....))).))))))))).)	chr2:236403051-236403335(+)$1	1	180	220	11.1557
(((((...(((.(((...(.(((....))))...))).))	chr2:75061566-75061824(+)$1	1	161	201	12.6655
((((((..((((..((((((((.....)))))..))).))	chr8:97506108-97506476(+)$1	1	252	292	10.8927
(.((((((.(((((.((..((.....))..))))))).))	chr17:77813034-77813322(-)$1	1	69	109	11.2267
(.(((.(((((.((....(((.....)))....))))).)	chr11:118919429-118919699(-)$1	1	47	87	13.1687
(((((..((.....(((..((.....))..)))))..)))	chr12:76449712-76450044(-)$1	1	143	183	11.3753
.((((((((.(.(((...(((....)))..))).))))))	chr18:55711510-55711805(+)$1	1	50	90	11.8754
).))))))))))))((((((((((((((((((.(.(((..	chr18:60382867-60383187(+)$1	1	146	186	10.0576
)))((((((((((((...((.(.....).))...))))))	chr16:22385523-22385861(-)$1	1	168	208	13.9990
(.(.((.(((.((((..(((.....)))..)))).)).).	chr6:117996575-117996882(+)$1	1	258	298	11.1745
))))))))(((((((((..((....))..)))))))))((	chr12:110719325-110719614(+)$1	1	19	59	14.1036
(((.(((.(((.(((.((((....)))).)))..)))..)	chr8:126010697-126010976(+)$1	1	103	143	10.6138
(.(((((.(((.((..(((((.....)))))..))))).)	chr20:25371096-25371506(-)$1	1	43	83	11.2548
(.(.(((....(((.(((.((....)).))).)))..)))	chr17:16945976-16946284(+)$1	1	106	146	13.4385
.((.(((..((((((.((.((((...)))))).)))))).	chr11:2152143-2152356(-)$1	1	73	113	10.6777
(((.(((((((....((((.((....))))))..))))))	chr2:11484261-11484599(-)$1	1	61	101	12.1482
((((.((((((((((..(((......))).))))))))))	chr2:220408233-220408513(-)$1	1	111	151	14.0484
(((((((((((((..((((((.....))))))))))))))	chr16:28222924-28223205(-)$1	1	177	217	13.5762
(...(((.(((....(((.((....)))))))).)))...	chr11:2152419-2152629(-)$1	1	48	88	15.0278
(.(((((((((..(((((.((.....)).))))).))).)	chr2:232576499-232576757(+)$1	1	172	212	12.8313
..((((..((((((((((.((...)).))).))).)))).	chr15:99192099-99192343(+)$1	1	159	199	11.1412
.((.(((..((((((.((.((((...)))))).)))))).	chr11:2152132-2152335(-)$1	1	52	92	10.6777
.(((.(.((((.(((((((((......)).))))))).))	chr2:232577116-232577327(+)$1	1	13	53	11.5758
.(((.((.(((.((((((.((...)).))))))...))).	chr15:72500985-72501335(-)$1	1	270	310	12.1804
((((((((((((.(((((.((((...))))..))))).))	chr11:2152414-2152619(-)$1	1	105	145	10.1790
((((.(((((((..((..(((.....)))..)).))))))	chr16:448868-449139(+)$1	1	28	68	13.8474
((((..(((.((((.(((.((...))))))))))))..))	chr6:170123811-170124179(-)$1	1	303	343	11.1323
(.(.(((.((((((((((.((.....))))))..))).))	chr19:531688-532046(+)$1	1	125	165	15.0006
((..(((.((.(((..(((((....)))))..))))))))	chr9:139734512-139734761(+)$1	1	64	104	10.3612
(((.((.(.(((..(((((((.....)))..))))...))	chr16:56459176-56459501(-)$1	1	184	224	12.7448
)).))).(((...((((..((....))..))))...))).	chr1:16482276-16482659(-)$1	1	49	89	10.8474
.(((((..((((((.((.(((.....)))..)).))).))	chr12:131356993-131357253(+)$1	1	138	178	13.8273
((....(((((((.((((.((....)).))).).))))))	chr8:144815732-144816019(-)$1	1	64	104	13.1955
))(((((((((((((((((((.....))))))))))))).	chr19:14201101-14201392(-)$1	1	187	227	12.7839
(.((((..(((....(((..((...))..)))....))).	chr22:19166061-19166345(-)$1	1	136	176	13.4316
(.(((((..(((((((....((....))...))))))).)	chr3:184044213-184044515(+)$1	1	5	45	12.2163
..((((.(((....(...(((.....)))..)....))).	chr19:3062203-3062528(-)$1	1	158	198	14.5640
(((....((((.(((((((((....)))....)))))).)	chrX:152953807-152954114(+)$1	1	79	119	11.6776
(((..(((.(((.((..(((.....)))..))..))).))	chr9:35731968-35732270(-)$1	1	160	200	13.5780
.(((((...((...(((((((....))).))))....)).	chr6:41514174-41514529(+)$1	1	147	187	11.1334
..(.(((((((((((((.(((....))))))).)).))))	chr19:49458057-49458391(+)$1	1	173	213	11.7699
((((.((.((((..(.((.((...)))).).)).)).)).	chr6:7910856-7911123(-)$1	1	57	97	10.7581
.((.(((..((((((.((.((((...)))))).)))))).	chr11:2152135-2152343(-)$1	1	60	100	10.6777
)))))).((((((..((((((.....))))))..))))))	chr14:91976136-91976386(-)$1	1	61	101	10.3719
.(((((.(((((((...(.((....)).).))))))).))	chr19:1020848-1021214(-)$1	1	246	286	13.4625
((((((.(.(((...((((((.....))))))))).).))	chr9:117052403-117052629(+)$1	1	93	133	12.4589
))))(((((((((..(((.((....)))))))))))))))	chrX:152913282-152913587(+)$1	1	147	187	12.7049
.(.(((((.(.((.((.(.((.....)).).)).))))))	chr19:1652274-1652550(-)$1	1	222	262	12.0634
((((.((....(((.(((.((.....))...))).)))))	chr4:76580159-76580533(-)$1	1	199	239	14.4203
(((.(((...(.((((..((....))..)))).)))).))	chr16:431824-432076(-)$1	1	90	130	10.8937
((((((((((((.(((((.((((...))))..))))).))	chr11:2152407-2152614(-)$1	1	100	140	10.1790
(.(.(((.((((((.(((((......))))))))))).))	chr16:29817748-29817998(+)$1	1	155	195	11.0962
((.(((((((((....((.((.....)).)).))))))))	chr19:49994678-49994904(+)$1	1	148	188	14.6740
(.(((.(.(((.((...((((.....)))).))))).).)	chr19:55628673-55629013(-)$1	1	87	127	12.9509
((...(((((((..(((..((....))..)))..))).))	chr1:44444912-44445262(+)$1	1	164	204	12.8889
(((.(((((....(((((.((....)))))))))))).))	chr12:6879227-6879482(+)$1	1	171	211	11.3767
..(((((((..(((...(((........)))...))))))	chr14:53162292-53162577(-)$1	1	28	68	9.8811
((((((.((((.(((.((.((....)))))))..)))).)	chr22:29279647-29279951(+)$1	1	86	126	10.7686
.((.(((..((((((.((.((((...)))))).)))))).	chr11:2152086-2152299(-)$1	1	16	56	10.6777
..((((((.(.(((((.(.(((...))).).))).)).).	chr10:88854294-88854545(-)$1	1	196	236	12.1037

#PSSM
c : 0.16	[ : 0.12	f : 0.09	g : 0.09	d : 0.09	e : 0.08	b : 0.08	! : 0.06	a : 0.04	h : 0.03	= : 0.03	# : 0.03	" : 0.01	B : 0.01	$ : 0.01	
[ : 0.19	c : 0.16	e : 0.11	g : 0.08	b : 0.08	d : 0.08	f : 0.06	h : 0.04	! : 0.04	= : 0.03	] : 0.01	" : 0.01	B : 0.01	a : 0.01	$ : 0.01	# : 0.01	
c : 0.19	d : 0.12	e : 0.12	g : 0.11	a : 0.08	b : 0.06	f : 0.06	h : 0.04	= : 0.04	# : 0.03	" : 0.03	[ : 0.03	! : 0.01	] : 0.01	
[ : 0.22	c : 0.14	e : 0.12	d : 0.11	g : 0.09	= : 0.06	# : 0.04	h : 0.04	f : 0.04	" : 0.03	! : 0.03	i : 0.01	
c : 0.24	g : 0.11	e : 0.11	d : 0.09	[ : 0.09	= : 0.06	# : 0.04	b : 0.04	f : 0.04	h : 0.03	! : 0.03	i : 0.03	a : 0.01	" : 0.01	
c : 0.22	g : 0.14	b : 0.11	e : 0.09	d : 0.08	= : 0.08	# : 0.04	f : 0.04	h : 0.03	[ : 0.03	! : 0.03	i : 0.03	" : 0.01	a : 0.01	
c : 0.20	g : 0.14	[ : 0.11	b : 0.09	! : 0.08	= : 0.08	e : 0.06	h : 0.03	" : 0.03	f : 0.03	: : 0.03	i : 0.03	# : 0.01	a : 0.01	d : 0.01	
g : 0.16	[ : 0.16	! : 0.14	= : 0.08	c : 0.08	b : 0.06	a : 0.06	" : 0.04	f : 0.04	# : 0.03	i : 0.03	e : 0.03	d : 0.03	h : 0.01	
c : 0.24	g : 0.16	[ : 0.09	b : 0.08	= : 0.08	! : 0.08	d : 0.06	f : 0.04	i : 0.04	# : 0.03	" : 0.03	h : 0.01	e : 0.01	
c : 0.29	g : 0.14	f : 0.11	= : 0.08	b : 0.08	d : 0.04	i : 0.04	# : 0.04	" : 0.03	[ : 0.03	a : 0.03	e : 0.01	$ : 0.01	! : 0.01	
c : 0.25	g : 0.14	f : 0.11	= : 0.08	d : 0.06	[ : 0.06	# : 0.06	i : 0.04	b : 0.04	" : 0.03	a : 0.03	e : 0.01	$ : 0.01	! : 0.01	
[ : 0.17	c : 0.16	g : 0.11	f : 0.11	= : 0.08	# : 0.08	d : 0.06	b : 0.06	" : 0.04	i : 0.04	e : 0.01	$ : 0.01	! : 0.01	
c : 0.17	f : 0.14	! : 0.09	b : 0.09	# : 0.09	g : 0.08	= : 0.08	d : 0.06	[ : 0.04	" : 0.04	i : 0.03	e : 0.01	$ : 0.01	
c : 0.20	f : 0.12	! : 0.12	d : 0.09	e : 0.08	# : 0.08	b : 0.06	= : 0.06	g : 0.04	[ : 0.03	" : 0.03	$ : 0.01	i : 0.01	
c : 0.16	d : 0.12	[ : 0.11	f : 0.09	# : 0.08	! : 0.08	= : 0.06	e : 0.06	" : 0.06	b : 0.04	a : 0.04	g : 0.03	i : 0.01	
c : 0.22	d : 0.12	" : 0.11	[ : 0.11	! : 0.08	f : 0.08	e : 0.08	b : 0.06	# : 0.03	= : 0.03	g : 0.03	i : 0.01	
c : 0.19	b : 0.14	! : 0.11	" : 0.11	d : 0.11	e : 0.11	f : 0.08	# : 0.03	= : 0.03	[ : 0.03	i : 0.01	g : 0.01	
c : 0.20	! : 0.14	e : 0.12	b : 0.11	d : 0.09	f : 0.08	" : 0.06	a : 0.04	# : 0.03	= : 0.03	[ : 0.03	g : 0.01	
[ : 0.37	c : 0.24	! : 0.09	d : 0.06	e : 0.06	f : 0.04	= : 0.03	b : 0.03	a : 0.01	g : 0.01	# : 0.01	
b : 0.38	c : 0.25	d : 0.14	e : 0.06	f : 0.04	[ : 0.03	= : 0.03	! : 0.01	# : 0.01	
b : 0.40	c : 0.20	d : 0.12	e : 0.04	f : 0.04	= : 0.03	n : 0.03	m : 0.03	o : 0.03	[ : 0.01	q : 0.01	
n : 0.32	m : 0.29	d : 0.11	l : 0.08	b : 0.04	o : 0.04	c : 0.03	e : 0.01	= : 0.01	a : 0.01	q : 0.01	
n : 0.35	m : 0.32	l : 0.12	d : 0.09	o : 0.04	c : 0.01	= : 0.01	q : 0.01	
n : 0.35	m : 0.33	l : 0.22	o : 0.04	= : 0.01	q : 0.01	
n : 0.35	m : 0.30	l : 0.14	b : 0.08	o : 0.04	c : 0.01	= : 0.01	d : 0.01	q : 0.01	
n : 0.32	b : 0.25	c : 0.14	l : 0.09	m : 0.04	o : 0.04	d : 0.03	= : 0.01	e : 0.01	q : 0.01	
b : 0.33	c : 0.25	d : 0.14	e : 0.04	f : 0.04	n : 0.03	= : 0.03	] : 0.03	m : 0.01	o : 0.01	2 : 0.01	q : 0.01	
c : 0.30	b : 0.19	d : 0.14	2 : 0.09	e : 0.08	f : 0.06	] : 0.04	= : 0.03	a : 0.01	q : 0.01	
c : 0.22	d : 0.19	2 : 0.16	] : 0.14	e : 0.08	f : 0.06	= : 0.03	b : 0.03	3 : 0.03	4 : 0.01	a : 0.01	
d : 0.24	c : 0.20	2 : 0.14	e : 0.09	f : 0.06	] : 0.04	a : 0.04	4 : 0.03	= : 0.03	b : 0.03	3 : 0.03	i : 0.01	
c : 0.19	d : 0.14	b : 0.12	2 : 0.11	e : 0.08	] : 0.08	f : 0.06	= : 0.04	4 : 0.03	i : 0.03	g : 0.03	3 : 0.03	a : 0.01	
c : 0.19	b : 0.17	d : 0.16	f : 0.08	2 : 0.06	3 : 0.04	e : 0.04	= : 0.04	] : 0.04	g : 0.04	4 : 0.03	i : 0.03	a : 0.01	
2 : 0.16	c : 0.14	d : 0.09	] : 0.09	e : 0.08	b : 0.08	f : 0.06	3 : 0.04	4 : 0.04	i : 0.04	= : 0.04	g : 0.04	[ : 0.01	a : 0.01	
2 : 0.14	] : 0.12	c : 0.12	f : 0.11	3 : 0.08	e : 0.08	b : 0.06	i : 0.04	= : 0.04	g : 0.04	4 : 0.04	a : 0.03	d : 0.03	
c : 0.24	g : 0.12	f : 0.12	b : 0.09	] : 0.08	e : 0.06	= : 0.06	i : 0.04	4 : 0.04	3 : 0.03	d : 0.03	a : 0.01	[ : 0.01	
c : 0.27	g : 0.12	f : 0.12	b : 0.08	e : 0.06	= : 0.06	i : 0.04	3 : 0.04	4 : 0.04	2 : 0.03	d : 0.03	] : 0.03	h : 0.01	
c : 0.30	g : 0.14	f : 0.12	e : 0.06	= : 0.06	2 : 0.04	b : 0.04	i : 0.04	d : 0.03	] : 0.03	a : 0.03	h : 0.01	3 : 0.01	4 : 0.01	
] : 0.27	c : 0.17	g : 0.12	f : 0.11	= : 0.06	i : 0.04	e : 0.03	2 : 0.03	3 : 0.03	d : 0.03	b : 0.03	h : 0.01	a : 0.01	
c : 0.25	g : 0.14	] : 0.12	b : 0.08	f : 0.08	= : 0.06	d : 0.04	e : 0.04	h : 0.03	a : 0.03	i : 0.03	" : 0.01	2 : 0.01	3 : 0.01	
c : 0.22	g : 0.14	] : 0.09	2 : 0.09	b : 0.08	e : 0.08	h : 0.04	= : 0.04	f : 0.04	d : 0.03	" : 0.01	3 : 0.01	: : 0.01	4 : 0.01	D : 0.01	i : 0.01	

#score	752.2651288397501
#seq	62
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_CDS_m3_run2.txt

#BEAR
e[aqqqqqqqqa]eee	chr16:72142227-72142502(+)$1	275	46	62	6.4045
ffffqqqqqqqqffff	chr20:56140285-56140521(+)$1	236	48	64	5.3779
ddddpppppppdddd]	chr1:43212718-43212989(-)$1	271	227	243	10.1378
ddddpppppppdddd]	chr7:142962001-142962239(+)$1	238	53	69	10.1378
eeeepppppppeeeee	chr2:128180682-128180991(+)$1	309	219	235	10.5429
ddddqqqqqqqqdddd	chr19:1012061-1012406(-)$1	345	118	134	6.5789
eerrrrrrrrreeeee	chr2:219267643-219267872(+)$1	229	37	53	8.8153
dddrrrrrrrrrdddd	chr19:46357608-46357893(-)$1	285	107	123	8.7856
:cccpppppppccchh	chr17:73871336-73871584(-)$1	248	187	203	8.2150
ffffpppppppfffff	chr17:79865281-79865532(-)$1	251	167	183	8.7227
ddddpppppppddddG	chr16:67983707-67984038(-)$1	331	269	285	9.4351
dddrrrrrrrrrdddd	chr16:50582551-50582813(+)$1	262	201	217	8.7856
iiiipppppppiiiii	chr14:54418396-54418665(-)$1	269	108	124	9.2194
ddddpppppppdddd:	chr11:70265862-70266136(+)$1	274	149	165	9.1054
eeeepppppppeeeee	chr16:29816008-29816262(+)$1	254	149	165	10.5429
ggggpppppppggggg	chr17:27074221-27074456(+)$1	235	19	35	9.2049
ee[apppppppa]eee	chrM:14181-14398(-)$1	217	33	49	10.5116
hhhhppppppphhhhh	chr7:73010686-73010948(-)$1	262	124	140	7.8713
cccrrrrrrrrrccc]	chr11:67810675-67810936(+)$1	261	232	248	8.3264
eeeeeooooooeeeee	chr3:48451341-48451548(-)$1	207	23	39	4.8324
ddddpppppppddddb	chr6:134493183-134493437(-)$1	254	99	115	9.7035
ddddpppppppdddd3	chr20:62373115-62373359(+)$1	244	195	211	10.0377
eeeepppppppeeeee	chr1:11718308-11718608(+)$1	300	130	146	10.5429
eeeeqqqqqqqqeeee	chr17:7011759-7012033(-)$1	274	163	179	7.0973
b[bbpppppppbbbb]	chr19:1978465-1978720(+)$1	255	224	240	7.8646
eeeeqqqqqqqqeeee	chr20:56136586-56136834(+)$1	248	62	78	7.0973
a[bbpppppppbb]a]	chr20:61452781-61453044(+)$1	263	103	119	8.5886
ee[apppppppa]eee	chrM:14282-14501(-)$1	219	136	152	10.5116
eeeeqqqqqqqqeeee	chr20:60856116-60856361(+)$1	245	199	215	7.0973
!cccqqqqqqqqccc2	chrM:14217-14422(-)$1	205	161	177	5.8368
eesssssssssseeee	chr19:59059987-59060219(+)$1	232	4	20	6.1065
c[bbpppppppbb]cc	chr16:67984709-67984966(-)$1	257	2	18	8.5576
ddddqqqqqqqqdddd	chr7:142962095-142962413(+)$1	318	137	153	6.5789
!cccrrrrrrrrrccc	chr16:50664604-50664846(+)$1	242	126	142	7.9649
ddddqqqqqqqqdddd	chrM:14367-14600(-)$1	233	71	87	6.5789
eesssssssssseeee	chr16:67976993-67977279(-)$1	286	106	122	6.1065
ee[apppppppa]eee	chrM:14301-14514(-)$1	213	149	165	10.5116
eeeeeooooooeeeee	chr14:35872778-35872996(-)$1	218	121	137	4.8324
ffffpppppppfffff	chr7:100282732-100283073(-)$1	341	209	225	8.7227

#otherMatches

#Seq PSSM
UGCGGAAGGUAGAGUG	chr16:72142227-72142502(+)$1	275	46	62	6.4045
GUCAACAAUCAAUGGC	chr20:56140285-56140521(+)$1	236	48	64	5.3779
CCUGCUGUGAACGGGA	chr1:43212718-43212989(-)$1	271	227	243	10.1378
GCCCUGCCUCUGGGUG	chr7:142962001-142962239(+)$1	238	53	69	10.1378
CCUAGAGGAGGUGGGC	chr2:128180682-128180991(+)$1	309	219	235	10.5429
GGCCAGGAAGCAGGCC	chr19:1012061-1012406(-)$1	345	118	134	6.5789
GCCCAUGCCCUGCCAG	chr2:219267643-219267872(+)$1	229	37	53	8.8153
CUCUUCUUUCCUGGGG	chr19:46357608-46357893(-)$1	285	107	123	8.7856
AGGGUUAGGAUUCCUC	chr17:73871336-73871584(-)$1	248	187	203	8.2150
CCAGCCAUCCCUUGGG	chr17:79865281-79865532(-)$1	251	167	183	8.7227
CGGCACUCAUCGCCGA	chr16:67983707-67984038(-)$1	331	269	285	9.4351
GGCCACCCCGAAgccc	chr16:50582551-50582813(+)$1	262	201	217	8.7856
CCCAGUCUGCGUGGGG	chr14:54418396-54418665(-)$1	269	108	124	9.2194
GGUGGUAGCCACACCG	chr11:70265862-70266136(+)$1	274	149	165	9.1054
GCCUGAGGAGAAGGCU	chr16:29816008-29816262(+)$1	254	149	165	10.5429
UUCAAGUGCCCUGAGG	chr17:27074221-27074456(+)$1	235	19	35	9.2049
CUGUGGGUGAAAGAGU	chrM:14181-14398(-)$1	217	33	49	10.5116
CUGUCCCUACCACAGG	chr7:73010686-73010948(-)$1	262	124	140	7.8713
GGCUUCCUCAUUGCCA	chr11:67810675-67810936(+)$1	261	232	248	8.3264
CACCUGGGGAGGGGUG	chr3:48451341-48451548(-)$1	207	23	39	4.8324
CGCCGGAGGUAGGCGC	chr6:134493183-134493437(-)$1	254	99	115	9.7035
CUGGCCAGUGACCAGU	chr20:62373115-62373359(+)$1	244	195	211	10.0377
UACUUCAUAUUAGUAA	chr1:11718308-11718608(+)$1	300	130	146	10.5429
AGCUGCAAGCCGAGCU	chr17:7011759-7012033(-)$1	274	163	179	7.0973
UUCGACCUGUGCGACC	chr19:1978465-1978720(+)$1	255	224	240	7.8646
AGGAAGAGGGCAUCCU	chr20:56136586-56136834(+)$1	248	62	78	7.0973
GAGUACUGACAACCCU	chr20:61452781-61453044(+)$1	263	103	119	8.5886
CUGUGGGUGAAAGAGU	chrM:14282-14501(-)$1	219	136	152	10.5116
GCUCAGCCUCACGAGC	chr20:60856116-60856361(+)$1	245	199	215	7.0973
UCCUAUUGGUGCGGGG	chrM:14217-14422(-)$1	205	161	177	5.8368
GCAGGGAAUGGGGUCC	chr19:59059987-59060219(+)$1	232	4	20	6.1065
GGCAUCAUGGCUGGCU	chr16:67984709-67984966(-)$1	257	2	18	8.5576
UCUGACCUUCCCCAGG	chr7:142962095-142962413(+)$1	318	137	153	6.5789
ACUCAGACCUGCAGAG	chr16:50664604-50664846(+)$1	242	126	142	7.9649
GUUAUAUGGGUUUAAU	chrM:14367-14600(-)$1	233	71	87	6.5789
ACGGGGGUAAGGGUCA	chr16:67976993-67977279(-)$1	286	106	122	6.1065
CUGUGGGUGAAAGAGU	chrM:14301-14514(-)$1	213	149	165	10.5116
GGGUUCUCUCUGACCC	chr14:35872778-35872996(-)$1	218	121	137	4.8324
CAUGGCAAGAGCGUGG	chr7:100282732-100283073(-)$1	341	209	225	8.7227

#DB
(.(........).)))	chr16:72142227-72142502(+)$1	1	46	62	6.4045
((((........))))	chr20:56140285-56140521(+)$1	1	48	64	5.3779
((((.......)))).	chr1:43212718-43212989(-)$1	1	227	243	10.1378
((((.......)))).	chr7:142962001-142962239(+)$1	1	53	69	10.1378
((((.......)))))	chr2:128180682-128180991(+)$1	1	219	235	10.5429
((((........))))	chr19:1012061-1012406(-)$1	1	118	134	6.5789
((.........)))))	chr2:219267643-219267872(+)$1	1	37	53	8.8153
(((.........))))	chr19:46357608-46357893(-)$1	1	107	123	8.7856
.(((.......)))((	chr17:73871336-73871584(-)$1	1	187	203	8.2150
((((.......)))))	chr17:79865281-79865532(-)$1	1	167	183	8.7227
((((.......)))))	chr16:67983707-67984038(-)$1	1	269	285	9.4351
(((.........))))	chr16:50582551-50582813(+)$1	1	201	217	8.7856
((((.......)))))	chr14:54418396-54418665(-)$1	1	108	124	9.2194
((((.......)))).	chr11:70265862-70266136(+)$1	1	149	165	9.1054
((((.......)))))	chr16:29816008-29816262(+)$1	1	149	165	10.5429
((((.......)))))	chr17:27074221-27074456(+)$1	1	19	35	9.2049
((.(.......).)))	chrM:14181-14398(-)$1	1	33	49	10.5116
((((.......)))))	chr7:73010686-73010948(-)$1	1	124	140	7.8713
(((.........))).	chr11:67810675-67810936(+)$1	1	232	248	8.3264
(((((......)))))	chr3:48451341-48451548(-)$1	1	23	39	4.8324
((((.......))))(	chr6:134493183-134493437(-)$1	1	99	115	9.7035
((((.......)))).	chr20:62373115-62373359(+)$1	1	195	211	10.0377
((((.......)))))	chr1:11718308-11718608(+)$1	1	130	146	10.5429
((((........))))	chr17:7011759-7012033(-)$1	1	163	179	7.0973
(.((.......)))).	chr19:1978465-1978720(+)$1	1	224	240	7.8646
((((........))))	chr20:56136586-56136834(+)$1	1	62	78	7.0973
(.((.......)).).	chr20:61452781-61453044(+)$1	1	103	119	8.5886
((.(.......).)))	chrM:14282-14501(-)$1	1	136	152	10.5116
((((........))))	chr20:60856116-60856361(+)$1	1	199	215	7.0973
.(((........))).	chrM:14217-14422(-)$1	1	161	177	5.8368
((..........))))	chr19:59059987-59060219(+)$1	1	4	20	6.1065
(.((.......)).))	chr16:67984709-67984966(-)$1	1	2	18	8.5576
((((........))))	chr7:142962095-142962413(+)$1	1	137	153	6.5789
.(((.........)))	chr16:50664604-50664846(+)$1	1	126	142	7.9649
((((........))))	chrM:14367-14600(-)$1	1	71	87	6.5789
((..........))))	chr16:67976993-67977279(-)$1	1	106	122	6.1065
((.(.......).)))	chrM:14301-14514(-)$1	1	149	165	10.5116
(((((......)))))	chr14:35872778-35872996(-)$1	1	121	137	4.8324
((((.......)))))	chr7:100282732-100283073(-)$1	1	209	225	8.7227

#PSSM
e : 0.38	d : 0.28	f : 0.07	c : 0.05	! : 0.05	: : 0.02	i : 0.02	g : 0.02	h : 0.02	b : 0.02	a : 0.02	
e : 0.35	d : 0.28	[ : 0.10	c : 0.10	f : 0.07	i : 0.02	g : 0.02	h : 0.02	
d : 0.28	e : 0.20	c : 0.10	f : 0.07	[ : 0.07	b : 0.07	s : 0.05	a : 0.02	r : 0.02	i : 0.02	g : 0.02	h : 0.02	
d : 0.23	e : 0.20	r : 0.10	f : 0.07	c : 0.07	a : 0.07	b : 0.07	s : 0.05	q : 0.02	i : 0.02	g : 0.02	h : 0.02	
p : 0.53	q : 0.23	r : 0.12	e : 0.05	s : 0.05	
p : 0.53	q : 0.23	r : 0.12	o : 0.05	s : 0.05	
p : 0.53	q : 0.23	r : 0.12	o : 0.05	s : 0.05	
p : 0.53	q : 0.23	r : 0.12	o : 0.05	s : 0.05	
p : 0.53	q : 0.23	r : 0.12	o : 0.05	s : 0.05	
p : 0.53	q : 0.23	r : 0.12	o : 0.05	s : 0.05	
p : 0.53	q : 0.23	r : 0.12	o : 0.05	s : 0.05	
q : 0.20	d : 0.15	e : 0.15	a : 0.10	r : 0.10	b : 0.07	f : 0.05	s : 0.05	c : 0.02	i : 0.02	g : 0.02	h : 0.02	
d : 0.28	e : 0.28	] : 0.10	f : 0.07	c : 0.07	b : 0.07	i : 0.02	g : 0.02	h : 0.02	r : 0.02	
e : 0.38	d : 0.28	c : 0.10	f : 0.07	] : 0.05	i : 0.02	g : 0.02	h : 0.02	b : 0.02	
e : 0.38	d : 0.28	c : 0.10	f : 0.07	h : 0.05	i : 0.02	g : 0.02	b : 0.02	a : 0.02	
e : 0.38	] : 0.12	d : 0.12	f : 0.07	h : 0.05	c : 0.05	G : 0.02	i : 0.02	: : 0.02	g : 0.02	b : 0.02	3 : 0.02	2 : 0.02	

#score	321.8933661611051
#seq	39
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_CDS_m2_run2.txt

#BEAR
:dddd"""eeeee####cccmmmmccc4444eeeee	chr4:129208545-129208830(-)$1	285	242	278	14.4219
####ccc[eeeee####cccnnnnnccc333eeeee	chr11:65350526-65350804(+)$1	278	165	201	14.7187
bb[ffffff!!a[a[fffffflllffffff]aa22f	chr19:2270420-2270667(+)$1	247	86	122	12.4869
ccc!!eeeee####ccccccmmmmccc]ccceeeee	chr19:18547577-18547844(-)$1	267	33	69	14.4398
!!ccc!!a[ccc[dddd!!aooooooa22dddd]cc	chr7:77166711-77166970(+)$1	259	99	135	11.9976
ccc[ccceeeee[gggggggmmmmgggggggeeeee	chr7:158621823-158622195(-)$1	372	192	228	14.2169
Cccc[bb[dddd[cccddddmmmmdddd]cccdddd	chr16:31044940-31045257(+)$1	317	12	48	11.1934
bb[ffffff!!a[a[fffffflllffffff]aa22f	chr19:2270490-2270716(+)$1	226	16	52	12.4869
ff[ccc"""ccc[a[eeeeemmmmeeeee]a]ccc6	chr2:54197784-54198040(-)$1	256	84	120	11.9555
c]cccccc[ccc[bb!!ccclllccc333bb]ccc]	chr5:138629681-138629966(+)$1	285	216	252	13.0600
ddd[bb[eeeeebb[ggggggglllgggggggbb>>	chr1:110527543-110527808(+)$1	265	96	132	10.1648
!!hhhhhhhh"""cccddddmmmmdddd333ccc33	chr21:35287931-35288174(-)$1	243	95	131	12.3997
hhgggggggeeeee"""cccooooooccc22eeeee	chr19:2270333-2270600(+)$1	267	184	220	13.1962
b:dddd[eeeee[ccc!!ccclllccc22ccceeee	chr19:4037218-4037484(+)$1	266	184	220	14.1043

#otherMatches

#Seq PSSM
CUGCUCGCGGUCAAUGGGAAAGUCUUCGACGUGACC	chr4:129208545-129208830(-)$1	285	242	278	14.4219
GGAUCUCAGGGCCCGAGGCUGGAAUGGCAGAGGCCC	chr11:65350526-65350804(+)$1	278	165	201	14.7187
GCCGCCGGGGAGCUGGGGGUGGCGCACUCCGACAGC	chr19:2270420-2270667(+)$1	247	86	122	12.4869
GGUGGCGCCCAACGACCUCGUGUUCGAUGGUGGGCG	chr19:18547577-18547844(-)$1	267	33	69	14.4398
gggcgggcgggcggcgggggggccAGCGACCGCAGC	chr7:77166711-77166970(+)$1	259	99	135	11.9976
UGCUGGCGCAGCUGGCGCGGAGCUUCGCGCUGCUGC	chr7:158621823-158622195(-)$1	372	192	228	14.2169
CGGCGCCUUCCCAUUGACUGUGGGCGGUGCAAGGGA	chr16:31044940-31045257(+)$1	317	12	48	11.1934
GCCGCCGGGGAGCUGGGGGUGGCGCACUCCGACAGC	chr19:2270490-2270716(+)$1	226	16	52	12.4869
gggugggaggggguggggggggugUCCCUGGGCUCA	chr2:54197784-54198040(-)$1	256	84	120	11.9555
CGCUCGAGGCCUGAGGGACAGACUGUACACUGGGGG	chr5:138629681-138629966(+)$1	285	216	252	13.0600
gcggcgggucagccgcuggccgggccggccggGGAA	chr1:110527543-110527808(+)$1	265	96	132	10.1648
GCCCGGGAGAAGAUGGCUGCCCCAGCAGUGUCCGGG	chr21:35287931-35288174(-)$1	243	95	131	12.3997
GCUGGGGGUGGCGCACUCCGACAGCCCGGCAGCGCC	chr19:2270333-2270600(+)$1	267	184	220	13.1962
GACGCCGACGAGAUCGAGUACCUGGUGGACGGCUCG	chr19:4037218-4037484(+)$1	266	184	220	14.1043

#DB
.((((...(((((....(((....)))....)))))	chr4:129208545-129208830(-)$1	1	242	278	14.4219
....(((.(((((....(((.....)))...)))))	chr11:65350526-65350804(+)$1	1	165	201	14.7187
((.((((((..(.(.((((((...)))))).))..)	chr19:2270420-2270667(+)$1	1	86	122	12.4869
(((..(((((....((((((....))).))))))))	chr19:18547577-18547844(-)$1	1	33	69	14.4398
..(((..(.(((.((((..(......)..)))).))	chr7:77166711-77166970(+)$1	1	99	135	11.9976
(((.((((((((.(((((((....))))))))))))	chr7:158621823-158622195(-)$1	1	192	228	14.2169
((((.((.((((.(((((((....)))).)))))))	chr16:31044940-31045257(+)$1	1	12	48	11.1934
((.((((((..(.(.((((((...)))))).))..)	chr19:2270490-2270716(+)$1	1	16	52	12.4869
((.(((...(((.(.(((((....))))).).))).	chr2:54197784-54198040(-)$1	1	84	120	11.9555
).)))(((.(((.((..(((...)))...)).))).	chr5:138629681-138629966(+)$1	1	216	252	13.0600
(((.((.(((((((.(((((((...)))))))))..	chr1:110527543-110527808(+)$1	1	96	132	10.1648
..((((((((...(((((((....))))...)))..	chr21:35287931-35288174(-)$1	1	95	131	12.3997
((((((((((((((...(((......)))..)))))	chr19:2270333-2270600(+)$1	1	184	220	13.1962
).((((.(((((.(((..(((...)))..)))))))	chr19:4037218-4037484(+)$1	1	184	220	14.1043

#PSSM
b : 0.21	c : 0.21	! : 0.14	: : 0.07	# : 0.07	C : 0.07	f : 0.07	d : 0.07	h : 0.07	
c : 0.21	d : 0.14	b : 0.14	! : 0.14	# : 0.07	f : 0.07	] : 0.07	h : 0.07	: : 0.07	
c : 0.35	d : 0.21	[ : 0.21	# : 0.07	h : 0.07	g : 0.07	
c : 0.28	d : 0.14	f : 0.14	[ : 0.14	# : 0.07	! : 0.07	h : 0.07	g : 0.07	
c : 0.35	d : 0.14	f : 0.14	! : 0.07	[ : 0.07	b : 0.07	h : 0.07	g : 0.07	
c : 0.28	f : 0.14	b : 0.14	" : 0.07	e : 0.07	! : 0.07	h : 0.07	g : 0.07	d : 0.07	
c : 0.21	" : 0.14	f : 0.14	[ : 0.14	e : 0.07	! : 0.07	b : 0.07	h : 0.07	g : 0.07	
e : 0.28	" : 0.14	[ : 0.14	f : 0.14	a : 0.07	c : 0.07	h : 0.07	g : 0.07	
e : 0.42	f : 0.14	[ : 0.14	d : 0.07	" : 0.07	h : 0.07	g : 0.07	
e : 0.49	c : 0.21	! : 0.14	d : 0.07	h : 0.07	
e : 0.42	c : 0.21	! : 0.14	# : 0.07	d : 0.07	" : 0.07	
e : 0.42	c : 0.21	a : 0.14	# : 0.07	d : 0.07	" : 0.07	
[ : 0.57	e : 0.21	# : 0.07	b : 0.07	" : 0.07	
# : 0.21	a : 0.21	c : 0.21	b : 0.14	d : 0.07	g : 0.07	e : 0.07	
[ : 0.28	c : 0.28	# : 0.14	d : 0.07	g : 0.07	b : 0.07	" : 0.07	
c : 0.28	# : 0.14	f : 0.14	g : 0.14	d : 0.07	e : 0.07	! : 0.07	" : 0.07	
d : 0.21	# : 0.14	f : 0.14	g : 0.14	! : 0.14	c : 0.07	e : 0.07	" : 0.07	
c : 0.35	f : 0.14	! : 0.14	g : 0.14	d : 0.14	e : 0.07	
c : 0.42	f : 0.14	g : 0.14	d : 0.14	! : 0.07	e : 0.07	
c : 0.42	f : 0.14	g : 0.14	d : 0.14	a : 0.07	e : 0.07	
m : 0.42	f : 0.14	o : 0.14	n : 0.07	l : 0.07	g : 0.07	c : 0.07	
m : 0.42	l : 0.28	o : 0.14	n : 0.07	g : 0.07	
m : 0.42	l : 0.35	o : 0.14	n : 0.07	
m : 0.42	l : 0.28	o : 0.14	n : 0.07	c : 0.07	
c : 0.28	f : 0.14	o : 0.14	d : 0.14	n : 0.07	g : 0.07	e : 0.07	l : 0.07	
c : 0.35	f : 0.14	o : 0.14	g : 0.14	d : 0.14	e : 0.07	
c : 0.35	f : 0.14	g : 0.14	d : 0.14	a : 0.07	e : 0.07	3 : 0.07	
c : 0.14	f : 0.14	2 : 0.14	g : 0.14	d : 0.14	4 : 0.07	] : 0.07	e : 0.07	3 : 0.07	
3 : 0.21	f : 0.14	c : 0.14	2 : 0.14	g : 0.14	4 : 0.07	] : 0.07	e : 0.07	
c : 0.21	3 : 0.14	f : 0.14	g : 0.14	4 : 0.07	d : 0.07	] : 0.07	b : 0.07	2 : 0.07	
c : 0.21	3 : 0.14	] : 0.14	g : 0.14	4 : 0.07	d : 0.07	a : 0.07	b : 0.07	2 : 0.07	
e : 0.35	c : 0.21	a : 0.14	] : 0.14	d : 0.07	g : 0.07	
e : 0.42	c : 0.21	a : 0.14	d : 0.14	b : 0.07	
e : 0.42	c : 0.21	2 : 0.14	] : 0.07	d : 0.07	b : 0.07	
e : 0.42	c : 0.21	2 : 0.14	d : 0.07	> : 0.07	3 : 0.07	
e : 0.42	f : 0.14	c : 0.07	d : 0.07	6 : 0.07	] : 0.07	> : 0.07	3 : 0.07	

#score	180.8433456025286
#seq	14
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_transcript_m1_run1.txt

#BEAR
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr6:170167747-170167978(+)$1	231	108	142	44.7299
bb####eeeee^^^^^^^^^^^^^^^^^^eeeee	chr12:116713944-116714169(-)$1	225	118	152	32.9000
"""ccc^^^^^^^^^^^^^^^^^^^^^^^ccc]e	chr6:158290998-158291251(+)$1	253	90	124	39.9413
dd^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd:	chr12:113755364-113755654(-)$1	290	7	41	41.6806
####eeeee^^^^^^^^^^^^^^^^^^^^eeeee	chr13:46750817-46751130(-)$1	313	273	307	36.1795
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]a]	chr12:76449751-76449978(-)$1	227	79	113	44.4253
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr18:13106380-13106626(+)$1	246	203	237	45.3715
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr2:20536295-20536546(-)$1	251	82	116	45.3715
hh^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhh	chr12:25022989-25023267(-)$1	278	203	237	39.7174
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr12:58091626-58091900(+)$1	274	98	132	45.3715
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr4:174104146-174104382(+)$1	236	66	100	45.3715
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]d	chr9:80934785-80935004(+)$1	219	125	159	44.9280
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr19:4036614-4036831(+)$1	217	109	143	44.5324
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr16:18152753-18153024(-)$1	271	178	212	44.5324
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]f	chr22:47400770-47400993(+)$1	223	114	148	44.9882
e^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr22:48043431-48043653(+)$1	222	41	75	44.3876
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr12:74657891-74658164(-)$1	273	144	178	45.2099
hh^^^^^^^^^^^^^^^^^^^^^^^^hhhhhhhh	chr16:11265833-11266130(+)$1	297	52	86	35.5751
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr4:8610760-8611047(+)$1	287	168	202	44.6661
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chr6:10787288-10787540(+)$1	252	177	211	44.9389
ffff^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr19:41191101-41191372(-)$1	271	5	39	40.2288
GG::eeeee^^^^^^^^^^^^^^^^^^^^eeeee	chr5:53243048-53243262(-)$1	214	40	74	32.7796
^^^^^^^^^^^^^^^^^^^^^^bb]=========	chr16:85216535-85216793(+)$1	258	32	66	34.9917
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr11:2012593-2013026(+)$1	433	197	231	44.4950
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^=====	chr10:35714978-35715281(+)$1	303	82	116	45.0411
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr8:145828325-145828619(-)$1	294	187	221	44.5324
:::dddd^^^^^^^^^^^^^^^^^^^^^^dddd:	chr8:48422405-48422685(+)$1	280	106	140	33.9104
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr9:140563771-140564042(+)$1	271	131	165	44.5324
++eeeee^^^^^^^^^^^^^^^^^^^^^^eeeee	chr22:47401311-47401601(+)$1	290	114	148	38.0166
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr10:134177771-134178100(+)$1	329	117	151	44.6661
cc[ggggggg^^^^^^^^^^^^^^^^^^^ggggg	chr19:4690635-4690900(-)$1	265	47	81	32.4853
%%%dddd^^^^^^^^^^^^^^^^^^^^^^dddd3	chr22:48043294-48043516(+)$1	222	137	171	37.1131
fffff^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr2:97438578-97438890(+)$1	312	160	194	38.9591
^^^^^^^^^^^^^^^^^^^^ccc333dddd]ggg	chr19:55609037-55609295(-)$1	258	64	98	33.0284
ddd^^^^^^^^^^^^^^^^^^^^^^^^^^dddd9	chr10:72464601-72464817(+)$1	216	51	85	40.7679
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr9:134839535-134839802(-)$1	267	110	144	44.7299
^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]=	chr2:38939206-38939469(+)$1	263	24	58	43.5489
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr2:39336972-39337267(-)$1	295	73	107	45.3715
ffffff^^^^^^^^^^^^^^^^^^^^^^ffffff	chr2:241448093-241448425(-)$1	332	21	55	36.2297
!!ggggggg^^^^^^^^^^^^^^^^^^^^ggggg	chr17:80785765-80785981(+)$1	216	60	94	34.5183
gggggg^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr22:25903251-25903518(+)$1	267	74	108	38.3197
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr11:397786-398043(+)$1	257	161	195	44.6661
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd4	chrX:3740790-3741056(-)$1	266	116	150	44.7561
hhhhhhh^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr1:38153263-38153504(-)$1	241	74	108	32.7926
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]g	chr20:60588993-60589266(-)$1	273	161	195	45.0972
d^^^^^^^^^^^^^^^^^^^^^^^ddddeeeee]	chr6:158052238-158052471(+)$1	233	107	141	36.7822
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr1:227165743-227165968(+)$1	225	128	162	44.4950
eee^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr22:49852029-49852273(-)$1	244	28	62	42.1876
ddd^^^^^^^^^^^^^^^^^^^dddd333eeeee	chr3:48583397-48583666(-)$1	269	119	153	32.6967
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr22:23549148-23549415(+)$1	267	130	164	45.3715
gggg^^^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr2:178214693-178214916(-)$1	223	58	92	40.8512
^^^^^^^^^^^^^^^^^^^^^^^^dddd]bb]gg	chr12:124845555-124845769(-)$1	214	81	115	37.1290
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr16:11557370-11557582(-)$1	212	56	90	45.3715
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]ee	chr8:108323142-108323407(-)$1	265	72	106	44.6213
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^a]a33	chr8:57109362-57109600(-)$1	238	60	94	44.6641
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr7:98593654-98593913(+)$1	259	46	80	44.6661
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr19:49676232-49676460(+)$1	228	178	212	44.7299
ffffff^^^^^^^^^^^^^^^^^^^^^ffffff]	chr1:67425296-67425527(+)$1	231	141	175	34.8125
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr2:87781787-87782065(+)$1	278	126	160	44.7299

#otherMatches

#Seq PSSM
cacacacacacacacacacacaggcacaguugca	chr6:170167747-170167978(+)$1	231	108	142	44.7299
UCUCUUUCUGAUAAUUGACAACUUUUCCUUCGGA	chr12:116713944-116714169(-)$1	225	118	152	32.9000
cacgcacacacacccucuucacucucacuugccc	chr6:158290998-158291251(+)$1	253	90	124	39.9413
cacucacauacacaauacacacaaauacaugcac	chr12:113755364-113755654(-)$1	290	7	41	41.6806
UCUCCCAGAUAAUUUGCUUUCCUUCUUUUUCUGG	chr13:46750817-46751130(-)$1	313	273	307	36.1795
GAUGAAGAAAAAGAAGACCCCAAAGGAAUUCCUG	chr12:76449751-76449978(-)$1	227	79	113	44.4253
uaccaccaccaccacuaccacucaccacugcugu	chr18:13106380-13106626(+)$1	246	203	237	45.3715
cacacacacacacacacacacaaauuagccaggc	chr2:20536295-20536546(-)$1	251	82	116	45.3715
AAGUUUCCUUUUCACUCUCACACUCUCAUUUCCA	chr12:25022989-25023267(-)$1	278	203	237	39.7174
cacacacacacacacacacacacacccuauugcu	chr12:58091626-58091900(+)$1	274	98	132	45.3715
acacacacacacacacacacacacacacacUGCU	chr4:174104146-174104382(+)$1	236	66	100	45.3715
uucauucauccaucugucuacccauucaucuaua	chr9:80934785-80935004(+)$1	219	125	159	44.9280
aguccacaccaucacaugcacacacacaucuaua	chr19:4036614-4036831(+)$1	217	109	143	44.5324
ucacaaccccucccacauacccucaaacacacau	chr16:18152753-18153024(-)$1	271	178	212	44.5324
acauacaugccuuuauacacacacaucccuauac	chr22:47400770-47400993(+)$1	223	114	148	44.9882
gcacaauacacacacaccacagacacauacaugc	chr22:48043431-48043653(+)$1	222	41	75	44.3876
cacacacacacacacacacacacacacacGUAUG	chr12:74657891-74658164(-)$1	273	144	178	45.2099
UGCAUAGUcacacucccacacacauacaugcaca	chr16:11265833-11266130(+)$1	297	52	86	35.5751
acucacuuacucauucacuuacucacucauuguc	chr4:8610760-8611047(+)$1	287	168	202	44.6661
ccuccuauucacaaauccaccaauucaccaauuc	chr6:10787288-10787540(+)$1	252	177	211	44.9389
UGCACACUAUCCUACACCAUUCUCAGACAUGCGU	chr19:41191101-41191372(-)$1	271	5	39	40.2288
UUCCCUUGCCACAUCCUAUCUUUCCCCCAGCAAG	chr5:53243048-53243262(-)$1	214	40	74	32.7796
ucacaugcaaacccacccacacacuuguaugcau	chr16:85216535-85216793(+)$1	258	32	66	34.9917
cacacacacacacacacacacacacacacCCGUG	chr11:2012593-2013026(+)$1	433	197	231	44.4950
acacacacacacacacacacacacacagaugugc	chr10:35714978-35715281(+)$1	303	82	116	45.0411
acacgccuccacgcacgcacacagauacaugagc	chr8:145828325-145828619(-)$1	294	187	221	44.5324
acaucuguacaccacacacacUCCCUAUCCAGAA	chr8:48422405-48422685(+)$1	280	106	140	33.9104
ACUCACCUCCACCCAAGACGCCCCCCACAGCACG	chr9:140563771-140564042(+)$1	271	131	165	44.5324
cccauauucacacauacccuccuacacacauaug	chr22:47401311-47401601(+)$1	290	114	148	38.0166
acacccacccuuacaucuaccuccacacccgcgc	chr10:134177771-134178100(+)$1	329	117	151	44.6661
GCAUGUGUGUUUUacacacauacacucacacaca	chr19:4690635-4690900(-)$1	265	47	81	32.4853
cacaugcaacauacacagacucacaccaggcaua	chr22:48043294-48043516(+)$1	222	137	171	37.1131
GCAGGGCCACUCACACAUGUUCACACCCACCUGC	chr2:97438578-97438890(+)$1	312	160	194	38.9591
augagggguuuaauagguggggcagggucagcuc	chr19:55609037-55609295(-)$1	258	64	98	33.0284
ugcuuauacccacccgcacucacacaccugcaua	chr10:72464601-72464817(+)$1	216	51	85	40.7679
ccacaaucgcuaucaaccaccaccaucaCUGCUG	chr9:134839535-134839802(-)$1	267	110	144	44.7299
ccauaucuguuccugcuauucauaaauuucuucu	chr2:38939206-38939469(+)$1	263	24	58	43.5489
acacacacacacacgcacacacacacaACUGUAU	chr2:39336972-39337267(-)$1	295	73	107	45.3715
auacauccauccuuuuaaccagucacucauguau	chr2:241448093-241448425(-)$1	332	21	55	36.2297
AAUGUGcauacacucacagauacgcacacaugca	chr17:80785765-80785981(+)$1	216	60	94	34.5183
uggauacauacauacaCCAUCUCAUcauuuaucc	chr22:25903251-25903518(+)$1	267	74	108	38.3197
CAUAcccccgcacacaccuccgucaccuccguac	chr11:397786-398043(+)$1	257	161	195	44.6661
UAACUUACCCUCAUGACcacacacacacagacuu	chrX:3740790-3741056(-)$1	266	116	150	44.7561
UGUCuuuuauuuauuuuuauuuuauuuuuagaga	chr1:38153263-38153504(-)$1	241	74	108	32.7926
acauacacacacacacacacacacacacacccac	chr20:60588993-60589266(-)$1	273	161	195	45.0972
UGUUCAUCUCUUCUUCUACACAAAAGUAUUAAGA	chr6:158052238-158052471(+)$1	233	107	141	36.7822
uuuuacauccuccacacacccaccucauaccugc	chr1:227165743-227165968(+)$1	225	128	162	44.4950
caugcaAGCAACACUGACUCACACACAUAAUGUG	chr22:49852029-49852273(-)$1	244	28	62	42.1876
GGGCACAACACACACAUAACCACCCACACGUGUG	chr3:48583397-48583666(-)$1	269	119	153	32.6967
ccauccauucauccUCCAACCAUUCAUCUGUUCA	chr22:23549148-23549415(+)$1	267	130	164	45.3715
GCUGAUCUUGUUAUACACACACACCACCCCAGCU	chr2:178214693-178214916(-)$1	223	58	92	40.8512
uuuuuuuuuuuuuuuuuuuuguuugagacggagu	chr12:124845555-124845769(-)$1	214	81	115	37.1290
CCAUACACAUCCAUAUUCACACAAUCCACGUGUA	chr16:11557370-11557582(-)$1	212	56	90	45.3715
AGACACACACACACAUACUUUCAAUGAUCCAAUU	chr8:108323142-108323407(-)$1	265	72	106	44.6213
acacacacacacacacacacacacacacacgcac	chr8:57109362-57109600(-)$1	238	60	94	44.6641
CCCUCAUCCUCAUGUCCCAUCUACACACCAACGU	chr7:98593654-98593913(+)$1	259	46	80	44.6661
ccaucugcucauucuucuauccauccaucuucuc	chr19:49676232-49676460(+)$1	228	178	212	44.7299
AAUAUUUUCCCaaaauuuagauaaauuaauauuu	chr1:67425296-67425527(+)$1	231	141	175	34.8125
ucucucucucucacacacacacacacacacccac	chr2:87781787-87782065(+)$1	278	126	160	44.7299

#DB
.............................)))))	chr6:170167747-170167978(+)$1	1	108	142	44.7299
((....(((((..................)))))	chr12:116713944-116714169(-)$1	1	118	152	32.9000
...(((.......................))).)	chr6:158290998-158291251(+)$1	1	90	124	39.9413
((...........................)))).	chr12:113755364-113755654(-)$1	1	7	41	41.6806
....(((((....................)))))	chr13:46750817-46751130(-)$1	1	273	307	36.1795
.............................)).).	chr12:76449751-76449978(-)$1	1	79	113	44.4253
.............................)))))	chr18:13106380-13106626(+)$1	1	203	237	45.3715
.............................)))))	chr2:20536295-20536546(-)$1	1	82	116	45.3715
((..........................))))))	chr12:25022989-25023267(-)$1	1	203	237	39.7174
.............................)))))	chr12:58091626-58091900(+)$1	1	98	132	45.3715
.............................)))))	chr4:174104146-174104382(+)$1	1	66	100	45.3715
.............................))).)	chr9:80934785-80935004(+)$1	1	125	159	44.9280
.............................)))))	chr19:4036614-4036831(+)$1	1	109	143	44.5324
.............................)))))	chr16:18152753-18153024(-)$1	1	178	212	44.5324
.............................))).)	chr22:47400770-47400993(+)$1	1	114	148	44.9882
(............................)))))	chr22:48043431-48043653(+)$1	1	41	75	44.3876
.............................)))))	chr12:74657891-74658164(-)$1	1	144	178	45.2099
((........................))))))))	chr16:11265833-11266130(+)$1	1	52	86	35.5751
..............................))))	chr4:8610760-8611047(+)$1	1	168	202	44.6661
.............................)))).	chr6:10787288-10787540(+)$1	1	177	211	44.9389
((((.........................)))))	chr19:41191101-41191372(-)$1	1	5	39	40.2288
((..(((((....................)))))	chr5:53243048-53243262(-)$1	1	40	74	32.7796
......................)).)))))))))	chr16:85216535-85216793(+)$1	1	32	66	34.9917
...............................)))	chr11:2012593-2013026(+)$1	1	197	231	44.4950
.............................)))))	chr10:35714978-35715281(+)$1	1	82	116	45.0411
.............................)))))	chr8:145828325-145828619(-)$1	1	187	221	44.5324
...((((......................)))).	chr8:48422405-48422685(+)$1	1	106	140	33.9104
.............................)))))	chr9:140563771-140564042(+)$1	1	131	165	44.5324
..(((((......................)))))	chr22:47401311-47401601(+)$1	1	114	148	38.0166
..............................))))	chr10:134177771-134178100(+)$1	1	117	151	44.6661
((.(((((((...................)))))	chr19:4690635-4690900(-)$1	1	47	81	32.4853
...((((......................)))).	chr22:48043294-48043516(+)$1	1	137	171	37.1131
(((((........................)))))	chr2:97438578-97438890(+)$1	1	160	194	38.9591
....................)))...)))).)))	chr19:55609037-55609295(-)$1	1	64	98	33.0284
(((..........................)))).	chr10:72464601-72464817(+)$1	1	51	85	40.7679
.............................)))))	chr9:134839535-134839802(-)$1	1	110	144	44.7299
............................)))).)	chr2:38939206-38939469(+)$1	1	24	58	43.5489
.............................)))))	chr2:39336972-39337267(-)$1	1	73	107	45.3715
((((((......................))))))	chr2:241448093-241448425(-)$1	1	21	55	36.2297
..(((((((....................)))))	chr17:80785765-80785981(+)$1	1	60	94	34.5183
((((((.......................)))))	chr22:25903251-25903518(+)$1	1	74	108	38.3197
..............................))))	chr11:397786-398043(+)$1	1	161	195	44.6661
.............................)))).	chrX:3740790-3741056(-)$1	1	116	150	44.7561
(((((((......................)))))	chr1:38153263-38153504(-)$1	1	74	108	32.7926
.............................))).)	chr20:60588993-60589266(-)$1	1	161	195	45.0972
(.......................))))))))).	chr6:158052238-158052471(+)$1	1	107	141	36.7822
...............................)))	chr1:227165743-227165968(+)$1	1	128	162	44.4950
(((..........................)))))	chr22:49852029-49852273(-)$1	1	28	62	42.1876
(((...................))))...)))))	chr3:48583397-48583666(-)$1	1	119	153	32.6967
.............................)))))	chr22:23549148-23549415(+)$1	1	130	164	45.3715
((((.........................)))))	chr2:178214693-178214916(-)$1	1	58	92	40.8512
........................)))).)).))	chr12:124845555-124845769(-)$1	1	81	115	37.1290
.............................)))))	chr16:11557370-11557582(-)$1	1	56	90	45.3715
.............................)).))	chr8:108323142-108323407(-)$1	1	72	106	44.6213
.............................).)..	chr8:57109362-57109600(-)$1	1	60	94	44.6641
..............................))))	chr7:98593654-98593913(+)$1	1	46	80	44.6661
.............................)))))	chr19:49676232-49676460(+)$1	1	178	212	44.7299
((((((.....................)))))).	chr1:67425296-67425527(+)$1	1	141	175	34.8125
.............................)))))	chr2:87781787-87782065(+)$1	1	126	160	44.7299

#PSSM
^ : 0.59	d : 0.06	f : 0.06	h : 0.05	e : 0.03	g : 0.03	b : 0.01	" : 0.01	# : 0.01	G : 0.01	: : 0.01	+ : 0.01	c : 0.01	% : 0.01	! : 0.01	
^ : 0.62	f : 0.06	d : 0.05	h : 0.05	g : 0.03	b : 0.01	" : 0.01	# : 0.01	G : 0.01	: : 0.01	+ : 0.01	c : 0.01	% : 0.01	! : 0.01	e : 0.01	
^ : 0.67	f : 0.06	g : 0.05	# : 0.03	: : 0.03	e : 0.03	d : 0.03	" : 0.01	[ : 0.01	% : 0.01	h : 0.01	
^ : 0.72	f : 0.06	g : 0.06	# : 0.03	d : 0.03	c : 0.01	: : 0.01	e : 0.01	h : 0.01	
^ : 0.76	e : 0.05	g : 0.05	f : 0.05	d : 0.03	# : 0.01	c : 0.01	h : 0.01	
^ : 0.77	e : 0.05	g : 0.05	d : 0.03	f : 0.03	# : 0.01	c : 0.01	h : 0.01	
^ : 0.84	e : 0.06	d : 0.03	g : 0.03	h : 0.01	
^ : 0.91	e : 0.05	g : 0.03	
^ : 0.91	e : 0.05	g : 0.03	
^ : 0.96	e : 0.01	g : 0.01	
^ : 0.98	e : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.98	c : 0.01	
^ : 0.98	c : 0.01	
^ : 0.94	b : 0.01	c : 0.01	d : 0.01	
^ : 0.94	b : 0.01	3 : 0.01	d : 0.01	
^ : 0.91	d : 0.05	] : 0.01	3 : 0.01	
^ : 0.91	d : 0.05	= : 0.01	3 : 0.01	
^ : 0.89	d : 0.05	h : 0.01	= : 0.01	3 : 0.01	
^ : 0.88	d : 0.05	h : 0.01	= : 0.01	3 : 0.01	f : 0.01	
^ : 0.83	h : 0.03	d : 0.03	f : 0.03	= : 0.01	e : 0.01	3 : 0.01	] : 0.01	
e : 0.25	f : 0.13	d : 0.13	h : 0.11	^ : 0.10	g : 0.08	c : 0.06	b : 0.05	= : 0.03	a : 0.01	
e : 0.25	d : 0.18	f : 0.13	h : 0.11	g : 0.08	c : 0.06	b : 0.05	= : 0.03	^ : 0.03	] : 0.03	
e : 0.25	d : 0.18	f : 0.13	h : 0.11	c : 0.10	g : 0.10	] : 0.05	= : 0.03	a : 0.01	
e : 0.27	d : 0.16	f : 0.13	h : 0.11	g : 0.11	] : 0.08	= : 0.03	c : 0.03	a : 0.01	3 : 0.01	
e : 0.27	f : 0.13	g : 0.13	h : 0.11	d : 0.08	] : 0.06	= : 0.05	: : 0.03	c : 0.03	3 : 0.03	9 : 0.01	4 : 0.01	

#score	2433.5077410264626
#seq	59
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_CDS_m1_run2.txt

#BEAR
ff!!iiiiiiiii!!bblllbb4444iiiiiiiii4444	chr1:990102-990325(+)$1	223	115	154	13.4789
dddd[eeeee"""cccooooooccc333eeeee22dddd	chr9:116997787-116998016(+)$1	229	61	100	11.8790
[dddd[bb####eeeeennnnneeeee22bb]dddd]a2	chr20:60890016-60890269(-)$1	253	74	113	10.4504
dddd[dddd"""eeeeennnnneeeeedddd22dddd==	chr21:46897591-46897830(+)$1	239	15	54	10.5472
a[bb[dddd[ccc[cccnnnnnccccccdddd]bb]a]c	chr9:117008045-117008260(+)$1	215	163	202	12.6222
ggggggg!!dddd[cccmmmmcccdddd22ggggggg33	chr19:6707134-6707379(-)$1	245	129	168	11.9927
!!eeeeebb$$$$$cccnnnnnccc4444bb]eeeee22	chr17:79918551-79918888(-)$1	337	58	97	11.9790
gggggg####dddd[cccmmmmccc]dddd22ggggggg	chr20:17602083-17602290(-)$1	207	49	88	12.5161
####eeeee[a[ggggggglllgggggggaeeeee22cc	chr3:58109046-58109310(+)$1	264	49	88	10.5803
ee[ccc!!bb[bb!!bbnnnnnbb]bb]bb]ccceeeee	chr3:58084339-58084607(+)$1	268	152	191	11.6854
d!!a!!eeeee[ccccccmmmmccc]ccc]eeeee4444	chr19:45411737-45412018(+)$1	281	34	73	12.7707
ggggggg"""ccc!!bbmmmmbb4444ccc333gggggg	chr10:95353489-95353694(-)$1	205	6	45	14.0266
dd[==========ddddnnnnndddd333==========	chr9:117015063-117015311(+)$1	248	38	77	14.7418
iiiiiiieeeee[addddllldddd]a22eeeee]iiii	chr8:144994933-144995169(-)$1	236	136	175	10.7863
ggggg[bb[bbccc[cccmmmmccc]ccc]bb]bb]ggg	chr2:220404667-220404930(-)$1	263	165	204	11.2532
[==========[a!!annnnna22a]==========]ee	chr19:6710630-6710890(-)$1	260	201	240	14.6130
c[dddd!!a[ccc[cccnnnnnccc]ccca22dddd]cc	chr11:118921645-118921920(-)$1	275	138	177	14.3980
ee[dddd"""ccc[cccmmmmcccccc4444dddd22ee	chr3:133472368-133472645(+)$1	277	80	119	11.9139
b:eeeee!!dddd!!bbnnnnnbb333dddd22eeeeec	chr1:43396752-43396971(-)$1	219	22	61	12.2392
"""iiiiiiiii[ddddooooooddddiiiiiiiii444	chr20:61471852-61472059(+)$1	207	111	150	13.0525
dddd"""eeeee!!cccnnnnnccc]eeeee4444dddd	chr17:79804207-79804428(-)$1	221	10	49	13.3284
hhhhh[ccc$$$$$cccnnnnnccc4444ccchhhhhhh	chr17:26697113-26697386(-)$1	273	71	110	11.9539
ffffff[bb[ccc!!bboooooobb22cccbbffffff]	chr9:116999166-116999409(+)$1	243	128	167	10.3964
[ffffffccc"""cccmmmmcccccc]ffffffccc]bb	chr6:43100175-43100431(+)$1	256	84	123	9.7055
c!!eeeee####eeeeennnnneeeeeeeeeeccc]eee	chr12:57556588-57556830(+)$1	242	141	180	11.6333
bb[eeeeeffffff[bbnnnnnbb]ffffff]eeeee]b	chr2:220406242-220406490(-)$1	248	190	229	11.5025
bb[==========[bbmmmmbb]==========]bb]ff	chr9:116840348-116840591(-)$1	243	122	161	11.5053
cbb[ccc[dddd[ccc[aooooooa]cccdddd]cccbb	chr9:117044668-117044912(+)$1	244	78	117	10.9120
bb[dddd[iiiiiiiiiooooooiiiiiiiiidddd]bb	chr2:97482331-97482584(+)$1	253	157	196	12.1200
ccc[iiiiiiiii[bboooooobb]iiiiiiiiiccc:c	chr8:11706505-11706774(-)$1	269	22	61	12.7543
=a[iiiiiiiii"""bblllbb333iiiiiiiii333a]	chr2:220408156-220408422(-)$1	266	94	133	13.7134
dd[ccca[ffffff[bblllbb]ffffff]a333cccdd	chr6:31239335-31239639(-)$1	304	198	237	10.3001
a!!ffffff[bb!!bboooooobb333bb]ffffff22a	chr7:100285330-100285608(-)$1	278	111	150	11.2932
::iiiiiiiii[a[a[bbmmmmbb]aa]iiiiiiiiicc	chr17:1655901-1656120(+)$1	219	45	84	11.1997
f"""a[bb[gggggggbbmmmmbb22ggggggg]bb]af	chr20:60889758-60889985(-)$1	227	18	57	11.3542
ccc[bbcccccc[a[bbmmmmbb22a]ccc333ccc]bb	chr7:45928138-45928456(+)$1	318	84	123	11.7376
gggggg####bb[ddddmmmmdddd]bb22ggggggg]b	chr21:46912509-46912727(+)$1	218	29	68	10.8298
]ccceeeeeccc!!cccnnnnnccccccffffff[bbee	chr2:54874165-54874387(+)$1	222	129	168	12.0300
ccccc!!ccc[dddd[bbmmmmbb333dddd]ccc22cc	chr3:58135484-58135721(+)$1	237	148	187	11.8014
===="""dddd"""ddddmmmmdddddddd4444=====	chr1:230841798-230842043(-)$1	245	9	48	11.4464
dd[ccc$$$$$ccc[bbnnnnnbb]ccc22ccc]dddd4	chr10:73588673-73588936(-)$1	263	13	52	12.6743
dddd[eeeee!!a[cccmmmmccca]eeeee]dddd]cc	chr3:186338492-186338722(+)$1	230	17	56	12.2146
cc"""a[ggggggg[aooooooa]ggggggg]accc]ee	chr19:35758032-35758292(+)$1	260	128	167	13.2810
##gggggggggggggg[bbmmmmbb]ggggggg]ggggg	chr2:220435304-220435574(-)$1	270	157	196	10.1479
bb[bba"""eeeee[cccmmmmccceeeee22a]bb]bb	chr17:79812989-79813207(-)$1	218	154	193	11.2397
cc!!ccc[dddd[ddddnnnnndddd]dddd]ccc22cc	chr4:166300240-166300549(+)$1	309	137	176	12.5103
#ccc####eeeee!!cccmmmmccc]eeeee333ccc55	chr21:46897630-46897891(+)$1	261	70	109	11.6334
cc[a[ccc"""ffffffnnnnnffffffccc]a]ccc]d	chr9:117052428-117052708(+)$1	280	72	111	12.6829
b[ccc[adddd[bbcccnnnnnccc]bbdddd]a]ccc]	chr11:1774751-1774973(-)$1	222	80	119	12.0382
bb[bba"""eeeee[cccmmmmccceeeee22a]bb]bb	chr17:79813007-79813226(-)$1	219	173	212	11.2397
""ccc[ggggggg[cccnnnnncccggggggg22ccc]d	chr17:76968289-76968551(-)$1	262	49	88	14.2781
bb[==========[cccnnnnnccc]==========]bb	chr1:230845698-230845945(-)$1	247	148	187	16.5224
ff[ccc!!bb[ddddaccclllccc]a22ddddbb]ccc	chr12:57592162-57592420(+)$1	258	187	226	10.6489
!!ccc"""ccc"""cccnnnnnccccccccc]ccc]a]b	chr19:18499322-18499636(+)$1	314	157	196	15.1676
dddd[ggggggg"""bbnnnnnbb333ggggggg]dddd	chr8:144940432-144940706(-)$1	274	156	195	14.1064
dd"""ggggggg!!ddddmmmmdddd22ggggggg22dd	chr4:155507323-155507616(-)$1	293	114	153	11.3834
ggggggg"""ccc!!bbmmmmbb4444ccc333gggggg	chr10:95353498-95353742(-)$1	244	54	93	14.0266
bb!!eeeeeccc[a[bbnnnnnbba]ccc]eeeee22bb	chr6:160492916-160493144(+)$1	228	23	62	13.4644
eeee[ccc[accc!!bbmmmmbbccc]a22ccceeeee:	chr20:61463405-61463629(+)$1	224	111	150	10.5878

#otherMatches

#Seq PSSM
CUGCCCGUGGGCCCAGCACUGCCCAAGGCCUACGGCACA	chr1:990102-990325(+)$1	223	115	154	13.4789
UUGUAACCUUCUUUGCUGGUGUGUACUUAGGGUGAACAA	chr9:116997787-116998016(+)$1	229	61	100	11.8790
GUGCAGUCCCAGCUGCAGGCCAUGCAGGAGAAUGUGGAG	chr20:60890016-60890269(-)$1	253	74	113	10.4504
GGGCAGGGUGUGUGGGGCCCCACCCCAGCCCGAGCCCUG	chr21:46897591-46897830(+)$1	239	15	54	10.5472
CUGAAUGAGUGGCUccauuuauugggcccuuacucugug	chr9:117008045-117008260(+)$1	215	163	202	12.6222
CGAGGACGGCAUGCGGGAGAACCCCAUGAGGUUCUCGUG	chr19:6707134-6707379(-)$1	245	129	168	11.9927
cgccgccgccUCAAGGCCGCCCGCUCCCCGCAGGUGGAC	chr17:79918551-79918888(-)$1	337	58	97	11.9790
AAGAACCUUUGUGUGUGGCUAACUAAACACCUGUUCUUC	chr20:17602083-17602290(-)$1	207	49	88	12.5161
AAAGUCGUGGCAUCGGGGCCAGGUCUCGAGCACGGGAAG	chr3:58109046-58109310(+)$1	264	49	88	10.5803
CCGUGGAGUUGCUCGUGGAAGACAAAGGAAACCAGGUGU	chr3:58084339-58084607(+)$1	268	152	191	11.6854
CCGCCCUCUCGGCCGCAGGGCGCUGAUGGACGAGACCAU	chr19:45411737-45412018(+)$1	281	34	73	12.7707
GUGUUUUCCCGGGACCCCAACGGCCUGCCCCCAGAAGCG	chr10:95353489-95353694(-)$1	205	6	45	14.0266
GACUGAAGGAGGAAGCUUCCAUAGCUGAUUCCUCCUUUG	chr9:117015063-117015311(+)$1	248	38	77	14.7418
CUGCUGGAGAGCAGGGUCAUCGACCGCGAGCUCUACCAG	chr8:144994933-144995169(-)$1	236	136	175	10.7863
CGUGGCCCAUGCAGAUGUCUUCGCACCUGUCAAGGCCCA	chr2:220404667-220404930(-)$1	263	165	204	11.2532
CUCCGUGUGGGUGGACGUCAAGGACUCCUGCGUGGGCUC	chr19:6710630-6710890(-)$1	260	201	240	14.6130
AACCUGGAUGAGAGUGGCGUGCUCAGUCUAGACAGGGUG	chr11:118921645-118921920(-)$1	275	138	177	14.3980
CGGAUGCUGUGACACUGGAUGCAGGUUUGGUGUAUGAUG	chr3:133472368-133472645(+)$1	277	80	119	11.9139
CAAGGGGAAAGGAAAAGGAAGACUGGGUCCUGGCCCCUG	chr1:43396752-43396971(-)$1	219	22	61	12.2392
AGAUCCUGGGCUUCCAGGUGCCAUUGGGGCCCAGGGGAC	chr20:61471852-61472059(+)$1	207	111	150	13.0525
GUGCGCCUCAUCACCCUGGAGGAGGAGAUGACCAAGUAC	chr17:79804207-79804428(-)$1	221	10	49	13.3284
UCUGCCUCUCCCUCCCUUCCUCAGGCAUCAGAGCGGAGA	chr17:26697113-26697386(-)$1	273	71	110	11.9539
GGGGGAAGCCAGGGCCUCUGGUAAGUACCUGCUCCUCCA	chr9:116999166-116999409(+)$1	243	128	167	10.3964
UGGUGGGAGCACGCGGGAGUCCGGCUGCCCACCCAUGGC	chr6:43100175-43100431(+)$1	256	84	123	9.7055
GACCAGGUGUUGGACGCAGACGGCGUCACUUGCUUGGGU	chr12:57556588-57556830(+)$1	242	141	180	11.6333
AUGUUCAAAUCCCUCUGAGAGGCAAAGggauguuggaga	chr2:220406242-220406490(-)$1	248	190	229	11.5025
GCUCUUGCUGCUGAGCGCCUGCCUGGCGGUGAGCGCUGG	chr9:116840348-116840591(-)$1	243	122	161	11.5053
GCUAUCAAGGACAGCUGGGUGAGAUGGGCGUCCCUGGAG	chr9:117044668-117044912(+)$1	244	78	117	10.9120
CUGGCGCUGGCGCCUGCCGAGGUGCAGGUGCUGCGCGAG	chr2:97482331-97482584(+)$1	253	157	196	12.1200
CUGUGGCCCUUUGAGGGGACUGCUGCAGAGGGCCCAGCC	chr8:11706505-11706774(-)$1	269	22	61	12.7543
GCCCCCUCGGAGACUCCUCUGGCUGCUCUGGGGGUUCGC	chr2:220408156-220408422(-)$1	266	94	133	13.7134
GCCAGGCACAGGCUGACCGAGUGAGCCUGCGGAACCUGC	chr6:31239335-31239639(-)$1	304	198	237	10.3001
GAGCUGCAGGACAAGGAGUUCGCCGCGGUGCUGCAGGAC	chr7:100285330-100285608(-)$1	278	111	150	11.2932
ACGUGUCCCAGGUACUGGCCAACCUGAGUUGGGACACCC	chr17:1655901-1656120(+)$1	219	45	84	11.1997
CCAAGCUGAGCAUCCUGGAGAACCGUGGGGUGCACAACG	chr20:60889758-60889985(-)$1	227	18	57	11.3542
CGGCCCCUGUCUGCUGCUCGCGCCUGGAGAUGUCAGAGG	chr7:45928138-45928456(+)$1	318	84	123	11.7376
GGGGUCCGGGCAGGCGCGAGGGUGCGUGAUGACCCCAGC	chr21:46912509-46912727(+)$1	218	29	68	10.8298
AAGAAGCACCAGAUCUUAGAACAAGCUGUGGAGGACUAU	chr2:54874165-54874387(+)$1	222	129	168	12.0300
GAGGACCUGGAAGAUGGCACCUGCAAAGUCUCCUACUUC	chr3:58135484-58135721(+)$1	237	148	187	11.8014
AGGAUCUGGGCCUUUGGUGUCUGCCAGCCCUCAUUCCUG	chr1:230841798-230842043(-)$1	245	9	48	11.4464
GAGAGGGACUAAUUCAGAGGCACUAGAUGGCCUGUCUUA	chr10:73588673-73588936(-)$1	263	13	52	12.6743
GUGUUACUGGCAGCUCCUCCAGGACACCAGUUGCACCGG	chr3:186338492-186338722(+)$1	230	17	56	12.2146
GCAggcgggggcuggcgggccaggcggccccgggcccgc	chr19:35758032-35758292(+)$1	260	128	167	13.2810
CAGCCGGGCCGCGCCGAGGACGGCCCCGGCGCGAGCCUG	chr2:220435304-220435574(-)$1	270	157	196	10.1479
CAGCUCGACAAAGAUGGGGUUGUCCUCUUUAAGAAGGUG	chr17:79812989-79813207(-)$1	218	154	193	11.2397
CCGGGCGAGGGGGCAGCGCGCUGCUGGCUCUGUGCGGGG	chr4:166300240-166300549(+)$1	309	137	176	12.5103
CGGGCCCACCUGGCCGGGCAGGCCCCCCAGGAUCCCCAU	chr21:46897630-46897891(+)$1	261	70	109	11.6334
CAGGGCCUGCAGGGGCUGCCAGGGCCCCGGGGCGUGGUG	chr9:117052428-117052708(+)$1	280	72	111	12.6829
AGGCCGGGAAGACCCUCUGCCUGAGCGGCUUCAUGGGCA	chr11:1774751-1774973(-)$1	222	80	119	12.0382
CAGCUCGACAAAGAUGGGGUUGUCCUCUUUAAGAAGGUG	chr17:79813007-79813226(-)$1	219	173	212	11.2397
AACUGCUGCUGCCCAGGAGCGACCUGGCGGUGCCCAGCG	chr17:76968289-76968551(-)$1	262	49	88	14.2781
UGAUGGGAGCCAGUGUGGACAGCACCCUGGCUUUCAACA	chr1:230845698-230845945(-)$1	247	148	187	16.5224
CAAUGGCCUGACGCUGGACUAUGUCACUGAGCGCAUCUA	chr12:57592162-57592420(+)$1	258	187	226	10.6489
AAGACCUGGGCUGGGCCGAUUGGGUGCUGUCGCCACGGG	chr19:18499322-18499636(+)$1	314	157	196	15.1676
UGGUGGGCGGCGAGAUCCAGGAGAAGCUGCUGUCGGCCG	chr8:144940432-144940706(-)$1	274	156	195	14.1064
GGAAUCCUGGCAGCUCUGAACGCGGAAGUGCUGGGCACU	chr4:155507323-155507616(-)$1	293	114	153	11.3834
GUGUUUUCCCGGGACCCCAACGGCCUGCCCCCAGAAGCG	chr10:95353498-95353742(-)$1	244	54	93	14.0266
AGAACUCCAGGCCCAUGUUCAUCAGCGCCGUGGAGGACU	chr6:160492916-160493144(+)$1	228	23	62	13.4644
UGCCGCAGGCCCUAAGGGAGACCAGGUGAGCUGGGCACA	chr20:61463405-61463629(+)$1	224	111	150	10.5878

#DB
((..(((((((((..((...))....)))))))))....	chr1:990102-990325(+)$1	1	115	154	13.4789
((((.(((((...(((......)))...)))))..))))	chr9:116997787-116998016(+)$1	1	61	100	11.8790
.((((.((....(((((.....)))))..)).)))).).	chr20:60890016-60890269(-)$1	1	74	113	10.4504
((((.((((...(((((.....)))))))))..))))))	chr21:46897591-46897830(+)$1	1	15	54	10.5472
(.((.((((.(((.(((.....)))))))))).)).).)	chr9:117008045-117008260(+)$1	1	163	202	12.6222
(((((((..((((.(((....)))))))..)))))))..	chr19:6707134-6707379(-)$1	1	129	168	11.9927
..(((((((.....(((.....)))....)).)))))..	chr17:79918551-79918888(-)$1	1	58	97	11.9790
((((((....((((.(((....))).))))..)))))))	chr20:17602083-17602290(-)$1	1	49	88	12.5161
....(((((.(.(((((((...)))))))))))))..))	chr3:58109046-58109310(+)$1	1	49	88	10.5803
((.(((..((.((..((.....)).)).)).))))))))	chr3:58084339-58084607(+)$1	1	152	191	11.6854
(..(..(((((.((((((....))).))).)))))....	chr19:45411737-45412018(+)$1	1	34	73	12.7707
(((((((...(((..((....))....)))...))))))	chr10:95353489-95353694(-)$1	1	6	45	14.0266
((.((((((((((((((.....))))...))))))))))	chr9:117015063-117015311(+)$1	1	38	77	14.7418
((((((((((((.(((((...)))).)..))))).))))	chr8:144994933-144995169(-)$1	1	136	175	10.7863
(((((.((.(((((.(((....))).))).)).)).)))	chr2:220404667-220404930(-)$1	1	165	204	11.2532
.((((((((((.(..(.....)..).)))))))))).))	chr19:6710630-6710890(-)$1	1	201	240	14.6130
(.((((..(.(((.(((.....))).))))..)))).))	chr11:118921645-118921920(-)$1	1	138	177	14.3980
((.((((...(((.(((....))))))....))))..))	chr3:133472368-133472645(+)$1	1	80	119	11.9139
).(((((..((((..((.....))...))))..)))))(	chr1:43396752-43396971(-)$1	1	22	61	12.2392
...(((((((((.((((......)))))))))))))...	chr20:61471852-61472059(+)$1	1	111	150	13.0525
((((...(((((..(((.....))).)))))....))))	chr17:79804207-79804428(-)$1	1	10	49	13.3284
(((((.(((.....(((.....)))....))))))))))	chr17:26697113-26697386(-)$1	1	71	110	11.9539
((((((.((.(((..((......))..))))))))))).	chr9:116999166-116999409(+)$1	1	128	167	10.3964
.(((((((((...(((....)))))).))))))))).))	chr6:43100175-43100431(+)$1	1	84	123	9.7055
(..(((((....(((((.....))))))))))))).)))	chr12:57556588-57556830(+)$1	1	141	180	11.6333
((.(((((((((((.((.....)).)))))).))))).)	chr2:220406242-220406490(-)$1	1	190	229	11.5025
((.((((((((((.((....)).)))))))))).)).))	chr9:116840348-116840591(-)$1	1	122	161	11.5053
(((.(((.((((.(((.(......).))))))).)))))	chr9:117044668-117044912(+)$1	1	78	117	10.9120
((.((((.(((((((((......))))))))))))).))	chr2:97482331-97482584(+)$1	1	157	196	12.1200
(((.(((((((((.((......)).)))))))))))).(	chr8:11706505-11706774(-)$1	1	22	61	12.7543
((.(((((((((...((...))...)))))))))...).	chr2:220408156-220408422(-)$1	1	94	133	13.7134
((.((((.((((((.((...)).)))))).)...)))))	chr6:31239335-31239639(-)$1	1	198	237	10.3001
(..((((((.((..((......))...)).))))))..)	chr7:100285330-100285608(-)$1	1	111	150	11.2932
..(((((((((.(.(.((....)).)).)))))))))((	chr17:1655901-1656120(+)$1	1	45	84	11.1997
(...(.((.(((((((((....))..))))))).)).))	chr20:60889758-60889985(-)$1	1	18	57	11.3542
(((.((((((((.(.((....))..).)))...))).))	chr7:45928138-45928456(+)$1	1	84	123	11.7376
((((((....((.((((....)))).))..))))))).)	chr21:46912509-46912727(+)$1	1	29	68	10.8298
.))))))))(((..(((.....))))))((((((.((((	chr2:54874165-54874387(+)$1	1	129	168	12.0300
))(((..(((.((((.((....))...)))).)))..))	chr3:58135484-58135721(+)$1	1	148	187	11.8014
((((...((((...((((....))))))))....)))))	chr1:230841798-230842043(-)$1	1	9	48	11.4464
((.(((.....(((.((.....)).)))..))).)))).	chr10:73588673-73588936(-)$1	1	13	52	12.6743
((((.(((((..(.(((....)))).))))).)))).))	chr3:186338492-186338722(+)$1	1	17	56	12.2146
((...(.(((((((.(......).))))))).)))).))	chr19:35758032-35758292(+)$1	1	128	167	13.2810
..((((((((((((((.((....)).))))))).)))))	chr2:220435304-220435574(-)$1	1	157	196	10.1479
((.(((...(((((.(((....))))))))..).)).))	chr17:79812989-79813207(-)$1	1	154	193	11.2397
((..(((.((((.((((.....)))).)))).)))..))	chr4:166300240-166300549(+)$1	1	137	176	12.5103
.(((....(((((..(((....))).)))))...)))..	chr21:46897630-46897891(+)$1	1	70	109	11.6334
((.(.(((...((((((.....))))))))).).))).)	chr9:117052428-117052708(+)$1	1	72	111	12.6829
(.(((.(((((.(((((.....))).)))))).).))).	chr11:1774751-1774973(-)$1	1	80	119	12.0382
((.(((...(((((.(((....))))))))..).)).))	chr17:79813007-79813226(-)$1	1	173	212	11.2397
..(((.(((((((.(((.....))))))))))..))).)	chr17:76968289-76968551(-)$1	1	49	88	14.2781
((.((((((((((.(((.....))).)))))))))).))	chr1:230845698-230845945(-)$1	1	148	187	16.5224
((.(((..((.((((((((...))).)..)))))).)))	chr12:57592162-57592420(+)$1	1	187	226	10.6489
..(((...(((...(((.....))))))))).))).).)	chr19:18499322-18499636(+)$1	1	157	196	15.1676
((((.(((((((...((.....))...))))))).))))	chr8:144940432-144940706(-)$1	1	156	195	14.1064
((...(((((((..((((....))))..)))))))..))	chr4:155507323-155507616(-)$1	1	114	153	11.3834
(((((((...(((..((....))....)))...))))))	chr10:95353498-95353742(-)$1	1	54	93	14.0266
((..((((((((.(.((.....))).))).)))))..))	chr6:160492916-160493144(+)$1	1	23	62	13.4644
((((.(((.((((..((....))))).)..)))))))).	chr20:61463405-61463629(+)$1	1	111	150	10.5878

#PSSM
d : 0.16	c : 0.15	b : 0.15	g : 0.10	f : 0.06	[ : 0.05	# : 0.05	e : 0.05	a : 0.03	! : 0.03	" : 0.03	= : 0.03	i : 0.01	h : 0.01	: : 0.01	] : 0.01	
d : 0.16	b : 0.13	c : 0.13	g : 0.10	! : 0.08	f : 0.06	[ : 0.05	e : 0.05	" : 0.05	# : 0.03	= : 0.03	: : 0.03	i : 0.01	h : 0.01	a : 0.01	
[ : 0.23	c : 0.13	d : 0.11	g : 0.11	! : 0.10	" : 0.06	e : 0.05	b : 0.03	i : 0.03	= : 0.03	f : 0.03	# : 0.01	h : 0.01	
c : 0.16	d : 0.15	g : 0.11	e : 0.08	= : 0.08	i : 0.06	! : 0.05	b : 0.05	f : 0.05	[ : 0.05	" : 0.05	a : 0.03	# : 0.01	h : 0.01	
c : 0.16	[ : 0.11	g : 0.11	e : 0.11	i : 0.10	d : 0.06	= : 0.06	" : 0.06	f : 0.05	b : 0.05	! : 0.01	h : 0.01	a : 0.01	# : 0.01	
e : 0.15	g : 0.13	c : 0.13	i : 0.10	[ : 0.10	d : 0.08	= : 0.06	" : 0.05	f : 0.05	a : 0.05	! : 0.03	b : 0.01	# : 0.01	
e : 0.16	g : 0.11	i : 0.10	c : 0.10	" : 0.08	d : 0.06	! : 0.06	= : 0.06	b : 0.05	# : 0.05	[ : 0.03	f : 0.03	a : 0.03	$ : 0.01	
e : 0.16	" : 0.10	c : 0.10	i : 0.08	b : 0.08	! : 0.08	g : 0.08	d : 0.06	= : 0.06	[ : 0.06	# : 0.05	f : 0.01	$ : 0.01	
e : 0.15	i : 0.10	d : 0.10	" : 0.10	c : 0.08	g : 0.08	# : 0.06	b : 0.06	= : 0.06	[ : 0.05	f : 0.05	! : 0.03	a : 0.01	$ : 0.01	
e : 0.13	i : 0.10	d : 0.10	c : 0.10	g : 0.10	" : 0.08	[ : 0.08	# : 0.06	= : 0.06	$ : 0.05	b : 0.05	f : 0.03	a : 0.01	
c : 0.18	d : 0.11	i : 0.10	e : 0.10	g : 0.10	" : 0.06	= : 0.06	$ : 0.05	[ : 0.05	b : 0.05	# : 0.03	f : 0.03	a : 0.01	! : 0.01	
c : 0.20	d : 0.11	g : 0.10	i : 0.08	" : 0.08	[ : 0.08	e : 0.08	b : 0.05	= : 0.05	f : 0.05	# : 0.03	$ : 0.03	! : 0.01	
c : 0.16	[ : 0.11	" : 0.10	e : 0.10	d : 0.08	g : 0.08	! : 0.06	i : 0.05	= : 0.05	a : 0.05	f : 0.05	$ : 0.03	b : 0.03	
! : 0.22	[ : 0.16	d : 0.11	c : 0.10	e : 0.08	g : 0.06	" : 0.06	a : 0.05	f : 0.05	$ : 0.03	i : 0.01	b : 0.01	
c : 0.28	[ : 0.16	! : 0.15	d : 0.15	e : 0.05	g : 0.05	b : 0.05	" : 0.03	i : 0.01	a : 0.01	f : 0.01	
c : 0.37	b : 0.28	d : 0.11	e : 0.05	g : 0.05	a : 0.05	[ : 0.03	i : 0.01	f : 0.01	
c : 0.33	b : 0.28	d : 0.11	o : 0.06	e : 0.05	m : 0.03	[ : 0.03	g : 0.01	n : 0.01	i : 0.01	f : 0.01	
n : 0.38	m : 0.16	o : 0.11	c : 0.11	b : 0.06	l : 0.05	d : 0.05	g : 0.01	a : 0.01	
n : 0.38	m : 0.35	o : 0.13	l : 0.06	g : 0.01	b : 0.01	c : 0.01	
n : 0.38	m : 0.37	o : 0.13	l : 0.10	
n : 0.38	m : 0.33	o : 0.13	b : 0.06	l : 0.05	c : 0.01	
n : 0.37	m : 0.20	b : 0.13	o : 0.13	c : 0.06	l : 0.03	d : 0.03	a : 0.01	
c : 0.37	b : 0.25	d : 0.10	o : 0.06	e : 0.05	] : 0.03	4 : 0.01	g : 0.01	2 : 0.01	3 : 0.01	a : 0.01	m : 0.01	f : 0.01	
c : 0.38	b : 0.22	d : 0.11	4 : 0.05	e : 0.05	2 : 0.03	f : 0.03	g : 0.01	= : 0.01	o : 0.01	i : 0.01	3 : 0.01	] : 0.01	
c : 0.35	d : 0.13	] : 0.08	3 : 0.08	a : 0.06	4 : 0.05	e : 0.05	g : 0.03	b : 0.03	f : 0.03	2 : 0.03	= : 0.01	i : 0.01	
] : 0.27	c : 0.11	d : 0.10	4 : 0.08	3 : 0.08	e : 0.08	g : 0.05	f : 0.05	i : 0.05	2 : 0.03	a : 0.03	b : 0.01	= : 0.01	
c : 0.16	e : 0.13	3 : 0.10	g : 0.08	i : 0.06	d : 0.06	4 : 0.06	] : 0.06	b : 0.05	a : 0.05	= : 0.05	f : 0.05	2 : 0.03	
c : 0.22	d : 0.11	g : 0.10	e : 0.10	i : 0.08	2 : 0.06	f : 0.06	4 : 0.05	= : 0.05	b : 0.05	3 : 0.03	] : 0.03	a : 0.01	
c : 0.18	d : 0.13	e : 0.11	2 : 0.11	g : 0.11	i : 0.10	f : 0.06	4 : 0.05	= : 0.05	b : 0.03	3 : 0.01	
d : 0.16	e : 0.13	c : 0.11	i : 0.10	g : 0.10	] : 0.08	2 : 0.06	= : 0.06	b : 0.05	f : 0.05	a : 0.03	4 : 0.01	
e : 0.15	d : 0.13	g : 0.13	i : 0.10	c : 0.08	b : 0.06	2 : 0.06	= : 0.06	f : 0.06	3 : 0.05	4 : 0.03	] : 0.01	a : 0.01	
] : 0.15	g : 0.11	i : 0.10	e : 0.10	2 : 0.10	d : 0.08	3 : 0.08	c : 0.06	= : 0.06	f : 0.05	b : 0.03	4 : 0.03	
e : 0.11	d : 0.11	g : 0.11	c : 0.11	i : 0.08	3 : 0.08	= : 0.06	f : 0.06	a : 0.06	2 : 0.05	] : 0.05	4 : 0.03	h : 0.01	
e : 0.13	c : 0.13	] : 0.13	g : 0.11	d : 0.10	i : 0.08	b : 0.05	= : 0.05	f : 0.05	2 : 0.03	4 : 0.03	3 : 0.03	h : 0.01	a : 0.01	
c : 0.22	e : 0.13	d : 0.11	b : 0.11	g : 0.11	= : 0.06	i : 0.05	] : 0.05	f : 0.03	2 : 0.01	4 : 0.01	h : 0.01	3 : 0.01	[ : 0.01	
c : 0.16	d : 0.15	g : 0.10	2 : 0.10	] : 0.08	e : 0.08	b : 0.08	= : 0.06	i : 0.05	4 : 0.03	f : 0.03	h : 0.01	3 : 0.01	
] : 0.22	c : 0.13	g : 0.11	2 : 0.11	e : 0.10	d : 0.08	4 : 0.05	a : 0.03	= : 0.03	i : 0.03	h : 0.01	f : 0.01	3 : 0.01	b : 0.01	
c : 0.13	e : 0.13	b : 0.13	d : 0.10	] : 0.10	g : 0.08	4 : 0.05	a : 0.05	= : 0.05	2 : 0.03	f : 0.03	3 : 0.01	i : 0.01	h : 0.01	: : 0.01	5 : 0.01	
b : 0.18	c : 0.16	d : 0.11	e : 0.10	g : 0.08	4 : 0.06	= : 0.05	] : 0.05	2 : 0.03	f : 0.03	3 : 0.01	i : 0.01	h : 0.01	a : 0.01	5 : 0.01	: : 0.01	

#score	718.8945389616744
#seq	59
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_transcript_m3_run1.txt

#BEAR
eeeegggggggqqqqqqqqggggggg:::	chr6:7586189-7586437(+)$1	248	166	195	12.8591
ddd[bb[cccrrrrrrrrrccc]bb]ddd	chr5:137088284-137088555(-)$1	271	115	144	10.5345
eeee!!eeeeeqqqqqqqqeeeee22eee	chr22:29192964-29193226(-)$1	262	24	53	14.8355
c"""ccc[cccqqqqqqqqccc]ccc333	chr4:1289465-1289744(+)$1	279	208	237	17.1861
[a[eeeeebbrrrrrrrrrbb]eeeee]a	chr13:113977480-113977714(+)$1	234	178	207	11.1079
gggggggcccrrrrrrrrrccc]gggggg	chr1:988520-988776(+)$1	256	220	249	11.9989
$$$eeeee[bbqqqqqqqqbbeeeee]ff	chr16:87739415-87739705(-)$1	290	62	91	14.6165
==========rrrrrrrrr==========	chr15:23051174-23051429(-)$1	255	174	203	12.8020
bb!!gggggggqqqqqqqqgggggggbb]	chr19:13054890-13055138(+)$1	248	130	159	14.9956
!!iiiiiiiiiqqqqqqqqiiiiiiiii3	chrX:108886037-108886284(-)$1	247	30	59	16.6779
g[cccffffffqqqqqqqqffffff>>>>	chr2:97525796-97526027(-)$1	231	126	155	13.7964
=====!!a[bbqqqqqqqqbb]a4444==	chr14:70497258-70497518(+)$1	260	214	243	16.9909
eeee[ccc[bbqqqqqqqqbb]ccc333e	chr1:116947119-116947375(+)$1	256	210	239	15.7024
gggggffffffqqqqqqqqffffffeeee	chr17:38544972-38545217(-)$1	245	37	66	14.1794
cc[ccceeeeeqqqqqqqqeeeee]cccc	chr17:66526556-66526803(+)$1	247	2	31	14.7786
b[iiiiiiiiiqqqqqqqqiiiiiiiii3	chr7:45933054-45933283(+)$1	229	140	169	16.3712
[ccceeeeearrrrrrrrra]eeeee]cc	chr19:54378384-54378648(+)$1	264	44	73	10.7418
b[bbccc[cccqqqqqqqqcccccc]bbb	chr20:34638597-34638835(-)$1	238	198	227	15.0517
bb!!dddd[bbqqqqqqqqbbdddd22bb	chr2:43453579-43453839(-)$1	260	69	98	13.6750
ddddbb!!cccqqqqqqqqccc22bb333	chr6:7586604-7586866(+)$1	262	28	57	15.9477
:ccc####cccqqqqqqqqccc333ccc:	chr18:20798208-20798480(+)$1	272	101	130	15.8846
===========qqqqqqqq==========	chr20:30193925-30194175(+)$1	250	220	249	17.0761
ggggg"""cccqqqqqqqqccc333gggg	chr19:12907725-12907996(-)$1	271	213	242	17.8030
eeee"""ddddqqqqqqqqdddd333eee	chr2:220047755-220047974(+)$1	219	2	31	15.9383
dddd[a!!cccqqqqqqqqccc22a]ddd	chr6:30711105-30711361(-)$1	256	98	127	16.2110
"eeeee!!bbqqqqqqqqbb333eeeee4	chr1:31404286-31404548(-)$1	262	153	182	13.9304
$$$eeeeecccqqqqqqqqccc]eeeee4	chr1:55530327-55530596(+)$1	269	109	138	15.7603
a[aa[ffffffqqqqqqqqffffff]a]a	chr1:988462-988720(+)$1	258	98	127	14.7394
eeeee"""cccqqqqqqqqccc]eeeee]	chr14:69847080-69847336(-)$1	256	132	161	16.9123
ffff!!eeeeeqqqqqqqqeeeee333ff	chr7:157944176-157944461(-)$1	285	115	144	15.0452
c$$$$$eeeeeqqqqqqqqeeeee4444c	chr5:139646445-139646721(-)$1	276	59	88	14.6569
[eeeee!!bbqqqqqqqqbb22eeeee22	chr2:47234250-47234529(+)$1	279	121	150	13.0801
ggggg####bbrrrrrrrrrbb4444ggg	chr2:240287317-240287580(-)$1	263	230	259	11.8731
[iiiiiiiiirrrrrrrrriiiiiiiii]	chr17:38078101-38078316(-)$1	215	141	170	12.2319
ff[bb!!ddddqqqqqqqqdddd22bb]f	chr2:61764974-61765245(-)$1	271	117	146	14.2692
dbb[ccc[cccrrrrrrrrrccc]ccc22	chr3:58117725-58118033(+)$1	308	40	69	11.2326
c!!a####cccqqqqqqqqccc333a22c	chr17:70117191-70117462(+)$1	271	155	184	17.9250
dddddd[ddddqqqqqqqqdddd]dddd:	chr7:45932768-45933021(+)$1	253	151	180	13.0195
$$$eeeee[bbqqqqqqqqbbeeeee]ff	chr16:87739541-87739833(-)$1	292	190	219	14.6165
ee!!bb!!bbrrrrrrrrrbbbb22eeee	chr2:10923957-10924223(-)$1	266	113	142	10.7027
Eccc####cccqqqqqqqqccc333ccc:	chr18:20798525-20798759(+)$1	234	24	53	15.8467
eeeee"""cccqqqqqqqqccc22eeeee	chr4:74286766-74287005(+)$1	239	6	35	16.6333
bb"""a[ddddqqqqqqqqdddd]a333b	chr7:4756984-4757272(+)$1	288	26	55	15.4992
[eeeee!!cccqqqqqqqqccceeeeegg	chr7:158347479-158347755(-)$1	276	7	36	16.5748
ddddccc[cccqqqqqqqqccc]ccc22d	chr2:43449904-43450201(-)$1	297	33	62	15.7558
ddiiiiiiiiiqqqqqqqqiiiiiiiii:	chr14:24114354-24114623(+)$1	269	14	43	15.3028
"""bb!!ddddqqqqqqqqdddd333bb4	chr5:133291223-133291537(-)$1	314	54	83	15.6208
hhhhh"""cccrrrrrrrrrccc333hhh	chr2:36777952-36778233(+)$1	281	141	170	11.7283
d[ccc[bb[bbqqqqqqqqbb]bbccc]d	chr2:130919691-130919978(-)$1	287	105	134	14.1669

#otherMatches

#Seq PSSM
UAGCACAAAUCGAACUUAGGAUUUGUUUC	chr6:7586189-7586437(+)$1	248	166	195	12.8591
UGUUGUAAGGACUUGAUAACCUGGCUACA	chr5:137088284-137088555(-)$1	271	115	144	10.5345
UUCUUCCAGAACCAAAAACUUUUGCUAGA	chr22:29192964-29193226(-)$1	262	24	53	14.8355
GUcugcaccgcccucaccugugcugccuu	chr4:1289465-1289744(+)$1	279	208	237	17.1861
UUGCCGUGGCUUGGGGAUUGUACACGGGA	chr13:113977480-113977714(+)$1	234	178	207	11.1079
CUGUGGGUGCCUGCUCCUUGCACCCCACA	chr1:988520-988776(+)$1	256	220	249	11.9989
GCAGGUUGUGUUGCCUUGUGCCAACCCCC	chr16:87739415-87739705(-)$1	290	62	91	14.6165
AGGUccauuugugauguuggaauggauuu	chr15:23051174-23051429(-)$1	255	174	203	12.8020
CUUAGCUCCCCUCCAACCUGGGGGGCAGU	chr19:13054890-13055138(+)$1	248	130	159	14.9956
UGUUGCUGAUUUUAUUCUUGAUCAGUAGU	chrX:108886037-108886284(-)$1	247	30	59	16.6779
CCCCACUGCCCCGAGUGUCGGGCAGCGAU	chr2:97525796-97526027(-)$1	231	126	155	13.7964
UGUUUGGAGACUGACCCUUGUGUAUAAAG	chr14:70497258-70497518(+)$1	260	214	243	16.9909
CGGAAAGACUGAAAGAAUACAUUUUAUAU	chr1:116947119-116947375(+)$1	256	210	239	15.7024
UUGGCUGUGUCUAUAACUUGACACAGUCA	chr17:38544972-38545217(-)$1	245	37	66	14.1794
AGUACAACAGUUUUGUGUCACUGUCUGUC	chr17:66526556-66526803(+)$1	247	2	31	14.7786
ACUGGAUAUGUUGUUAAACACGUGUCUAU	chr7:45933054-45933283(+)$1	229	140	169	16.3712
UCGCUGUGCCUUAGUCAguguguacgugu	chr19:54378384-54378648(+)$1	264	44	73	10.7418
GCGGCCGUGGCGUCUCCCAGCCCGGACCC	chr20:34638597-34638835(-)$1	238	198	227	15.0517
AUAGGGCGCGCGCUCGGAGGCCGCCGAGU	chr2:43453579-43453839(-)$1	260	69	98	13.6750
AACCCAUAUACUCUUCGAUGUACUUGUUU	chr6:7586604-7586866(+)$1	262	28	57	15.9477
UGCCUCCCGCAUCCUCACUUGCCCUGGCU	chr18:20798208-20798480(+)$1	272	101	130	15.8846
AUUUUUUGAAAAGCAGACAUUUUAAAAAA	chr20:30193925-30194175(+)$1	250	220	249	17.0761
CUCCAAACUCCACAGUAUGGGACCCUGGA	chr19:12907725-12907996(-)$1	271	213	242	17.8030
GCACUUUAUAAUUUUUCUCUUGUCUUGUG	chr2:220047755-220047974(+)$1	219	2	31	15.9383
GGGGAGGACUCGGGUGGGGGAGGACGUCC	chr6:30711105-30711361(-)$1	256	98	127	16.2110
AUGUGUGAUCUUUAUUUUGAAAAAUACAG	chr1:31404286-31404548(-)$1	262	153	182	13.9304
UGUAACUUGAAGAUAUUUAUUCUGGGUUU	chr1:55530327-55530596(+)$1	269	109	138	15.7603
GUCUGCACGUGGGUGUCUGCACGUGGGUG	chr1:988462-988720(+)$1	258	98	127	14.7394
UACAGCGUGCUGUAGUGGAAGUUUUGUAU	chr14:69847080-69847336(-)$1	256	132	161	16.9123
gGGCGGGGGAGUAUUUCACCUCCUGAAGC	chr7:157944176-157944461(-)$1	285	115	144	15.0452
GUAACCCGCACCGCAGCAAGUGUGAUUCC	chr5:139646445-139646721(-)$1	276	59	88	14.6569
ACCUGCAUGGGGACAGGGCCUGGCGGGAC	chr2:47234250-47234529(+)$1	279	121	150	13.0801
CAUGUCUGUCCAUGUCCCUCGGUGCCACA	chr2:240287317-240287580(-)$1	263	230	259	11.8731
GCUUGGUUCCAGAGGUGAGGGGGCCAGGG	chr17:38078101-38078316(-)$1	215	141	170	12.2319
AGUCGGACUGCAACUGGCAGCAGAGCGUC	chr2:61764974-61765245(-)$1	271	117	146	14.2692
UGCUGAAUUAUGUAACCCAAAUGCUUCUU	chr3:58117725-58118033(+)$1	308	40	69	11.2326
UGUGAACUGGCCACCCCGCGCCUUCCUAA	chr17:70117191-70117462(+)$1	271	155	184	17.9250
GUAUAUCAUGAAACACUUCUCAUCAUAUU	chr7:45932768-45933021(+)$1	253	151	180	13.0195
GCAGGUUGUGUUGCCUUGUGCCAACCCCC	chr16:87739541-87739833(-)$1	292	190	219	14.6165
CUCUGACUGCUGCUUGAAUGUUCUUGGAG	chr2:10923957-10924223(-)$1	266	113	142	10.7027
ugccUCCCGCAUCCUCACUUGCCCUGGCU	chr18:20798525-20798759(+)$1	234	24	53	15.8467
ACAAAUAAGACUUAUAUUUGUCCUUUUGU	chr4:74286766-74287005(+)$1	239	6	35	16.6333
GCAUAUGGCUGGAAGGUGGUAGCGGGAGG	chr7:4756984-4757272(+)$1	288	26	55	15.4992
GUGGGCAGCCUCAGAAUUCAGGGCCCAGG	chr7:158347479-158347755(-)$1	276	7	36	16.5748
UGCUUUUCUAAUUCCAACUUUAUAAACUA	chr2:43449904-43450201(-)$1	297	33	62	15.7558
CUGUGCAGGAAUCGUGUCCUUCCUGUGCU	chr14:24114354-24114623(+)$1	269	14	43	15.3028
CCAUGGUUGACUUACAAGUGUCACUACAG	chr5:133291223-133291537(-)$1	314	54	83	15.6208
UUUACUUUGGUUCCUGUUGUGCUCUUGUA	chr2:36777952-36778233(+)$1	281	141	170	11.7283
GUGGCUGCACUGGGCUGAAGGGGUGCUUC	chr2:130919691-130919978(-)$1	287	105	134	14.1669

#DB
))))(((((((........)))))))...	chr6:7586189-7586437(+)$1	1	166	195	12.8591
(((.((.(((.........))).)).)))	chr5:137088284-137088555(-)$1	1	115	144	10.5345
((((..(((((........)))))..)))	chr22:29192964-29193226(-)$1	1	24	53	14.8355
(...(((.(((........))).)))...	chr4:1289465-1289744(+)$1	1	208	237	17.1861
.(.(((((((.........)).))))).)	chr13:113977480-113977714(+)$1	1	178	207	11.1079
((((((((((.........))).))))))	chr1:988520-988776(+)$1	1	220	249	11.9989
...(((((.((........))))))).))	chr16:87739415-87739705(-)$1	1	62	91	14.6165
((((((((((.........))))))))))	chr15:23051174-23051429(-)$1	1	174	203	12.8020
((..(((((((........))))))))).	chr19:13054890-13055138(+)$1	1	130	159	14.9956
..(((((((((........))))))))).	chrX:108886037-108886284(-)$1	1	30	59	16.6779
(.(((((((((........))))))....	chr2:97525796-97526027(-)$1	1	126	155	13.7964
(((((..(.((........)).)....))	chr14:70497258-70497518(+)$1	1	214	243	16.9909
((((.(((.((........)).)))...)	chr1:116947119-116947375(+)$1	1	210	239	15.7024
)))))((((((........))))))((((	chr17:38544972-38545217(-)$1	1	37	66	14.1794
((.((((((((........))))).))))	chr17:66526556-66526803(+)$1	1	2	31	14.7786
(.(((((((((........))))))))).	chr7:45933054-45933283(+)$1	1	140	169	16.3712
.(((((((((.........).))))).))	chr19:54378384-54378648(+)$1	1	44	73	10.7418
(.(((((.(((........)))))).)))	chr20:34638597-34638835(-)$1	1	198	227	15.0517
((..((((.((........))))))..))	chr2:43453579-43453839(-)$1	1	69	98	13.6750
((((((..(((........)))..))...	chr6:7586604-7586866(+)$1	1	28	57	15.9477
.(((....(((........)))...))).	chr18:20798208-20798480(+)$1	1	101	130	15.8846
(((((((((((........))))))))))	chr20:30193925-30194175(+)$1	1	220	249	17.0761
(((((...(((........)))...))))	chr19:12907725-12907996(-)$1	1	213	242	17.8030
((((...((((........))))...)))	chr2:220047755-220047974(+)$1	1	2	31	15.9383
((((.(..(((........)))..).)))	chr6:30711105-30711361(-)$1	1	98	127	16.2110
.(((((..((........))...))))).	chr1:31404286-31404548(-)$1	1	153	182	13.9304
...((((((((........))).))))).	chr1:55530327-55530596(+)$1	1	109	138	15.7603
(.((.((((((........)))))).).)	chr1:988462-988720(+)$1	1	98	127	14.7394
(((((...(((........))).))))).	chr14:69847080-69847336(-)$1	1	132	161	16.9123
((((..(((((........)))))...))	chr7:157944176-157944461(-)$1	1	115	144	15.0452
(.....(((((........)))))....)	chr5:139646445-139646721(-)$1	1	59	88	14.6569
.(((((..((........))..)))))..	chr2:47234250-47234529(+)$1	1	121	150	13.0801
(((((....((.........))....)))	chr2:240287317-240287580(-)$1	1	230	259	11.8731
.(((((((((.........))))))))).	chr17:38078101-38078316(-)$1	1	141	170	12.2319
((.((..((((........))))..)).)	chr2:61764974-61765245(-)$1	1	117	146	14.2692
(((.(((.(((.........))).)))..	chr3:58117725-58118033(+)$1	1	40	69	11.2326
(..(....(((........)))...)..)	chr17:70117191-70117462(+)$1	1	155	184	17.9250
))((((.((((........)))).)))).	chr7:45932768-45933021(+)$1	1	151	180	13.0195
...(((((.((........))))))).))	chr16:87739541-87739833(-)$1	1	190	219	14.6165
((..((..((.........))))..))))	chr2:10923957-10924223(-)$1	1	113	142	10.7027
((((....(((........)))...))).	chr18:20798525-20798759(+)$1	1	24	53	15.8467
(((((...(((........)))..)))))	chr4:74286766-74287005(+)$1	1	6	35	16.6333
((...(.((((........)))).)...)	chr7:4756984-4757272(+)$1	1	26	55	15.4992
.(((((..(((........))))))))))	chr7:158347479-158347755(-)$1	1	7	36	16.5748
(((((((.(((........))).)))..)	chr2:43449904-43450201(-)$1	1	33	62	15.7558
))(((((((((........))))))))).	chr14:24114354-24114623(+)$1	1	14	43	15.3028
...((..((((........))))...)).	chr5:133291223-133291537(-)$1	1	54	83	15.6208
(((((...(((.........)))...)))	chr2:36777952-36778233(+)$1	1	141	170	11.7283
(.(((.((.((........)).))))).)	chr2:130919691-130919978(-)$1	1	105	134	14.1669

#PSSM
d : 0.16	e : 0.14	[ : 0.10	g : 0.10	b : 0.10	c : 0.08	$ : 0.06	= : 0.06	" : 0.04	f : 0.04	! : 0.02	: : 0.02	a : 0.02	E : 0.02	h : 0.02	
e : 0.20	d : 0.12	[ : 0.10	g : 0.08	$ : 0.08	b : 0.08	c : 0.08	= : 0.06	" : 0.04	! : 0.04	f : 0.04	a : 0.02	i : 0.02	h : 0.02	
e : 0.18	d : 0.10	c : 0.10	g : 0.08	$ : 0.08	! : 0.08	i : 0.08	" : 0.06	[ : 0.06	= : 0.06	b : 0.04	a : 0.02	f : 0.02	h : 0.02	
e : 0.26	c : 0.12	g : 0.08	i : 0.08	d : 0.08	= : 0.06	! : 0.06	b : 0.06	[ : 0.04	" : 0.04	a : 0.04	f : 0.02	$ : 0.02	h : 0.02	
e : 0.20	c : 0.14	g : 0.12	b : 0.10	i : 0.08	= : 0.06	[ : 0.06	# : 0.06	! : 0.04	d : 0.04	" : 0.04	$ : 0.02	h : 0.02	
e : 0.16	c : 0.12	! : 0.10	" : 0.10	i : 0.08	# : 0.08	g : 0.06	b : 0.06	f : 0.06	= : 0.04	d : 0.04	a : 0.04	$ : 0.02	[ : 0.02	
e : 0.18	! : 0.18	c : 0.10	" : 0.10	i : 0.08	# : 0.08	g : 0.06	[ : 0.06	f : 0.06	= : 0.04	d : 0.02	b : 0.02	
e : 0.18	d : 0.12	! : 0.12	[ : 0.08	i : 0.08	# : 0.08	" : 0.08	c : 0.06	f : 0.06	g : 0.04	= : 0.04	a : 0.02	b : 0.02	
c : 0.34	[ : 0.12	e : 0.10	d : 0.10	b : 0.08	i : 0.08	f : 0.06	g : 0.04	= : 0.04	# : 0.02	
c : 0.34	b : 0.22	d : 0.10	e : 0.08	i : 0.08	f : 0.06	g : 0.04	= : 0.04	a : 0.02	
c : 0.30	r : 0.14	b : 0.14	d : 0.10	e : 0.08	i : 0.06	f : 0.06	g : 0.04	q : 0.04	= : 0.02	
q : 0.79	r : 0.20	
q : 0.79	r : 0.20	
q : 0.79	r : 0.20	
q : 0.79	r : 0.20	
q : 0.79	r : 0.20	
q : 0.79	r : 0.20	
q : 0.79	r : 0.20	
q : 0.75	r : 0.20	b : 0.04	
c : 0.30	b : 0.20	d : 0.10	e : 0.08	i : 0.08	f : 0.06	r : 0.06	g : 0.04	= : 0.04	a : 0.02	
c : 0.34	b : 0.18	d : 0.10	e : 0.08	i : 0.08	f : 0.06	g : 0.04	= : 0.04	] : 0.02	3 : 0.02	2 : 0.02	
c : 0.34	e : 0.14	d : 0.12	] : 0.08	i : 0.08	f : 0.06	g : 0.04	= : 0.04	b : 0.04	3 : 0.02	2 : 0.02	
e : 0.20	] : 0.12	d : 0.12	3 : 0.10	i : 0.08	c : 0.08	f : 0.06	2 : 0.06	g : 0.04	= : 0.04	b : 0.04	a : 0.02	4 : 0.02	
e : 0.26	3 : 0.14	2 : 0.10	c : 0.08	i : 0.08	g : 0.06	f : 0.06	] : 0.06	b : 0.04	= : 0.04	4 : 0.04	d : 0.02	
e : 0.20	3 : 0.16	c : 0.12	i : 0.08	g : 0.06	2 : 0.06	f : 0.06	4 : 0.06	b : 0.04	= : 0.04	d : 0.04	a : 0.04	] : 0.02	
e : 0.24	c : 0.14	3 : 0.12	g : 0.08	] : 0.08	i : 0.08	4 : 0.06	2 : 0.04	= : 0.04	b : 0.04	> : 0.02	a : 0.02	d : 0.02	
e : 0.22	3 : 0.10	c : 0.10	b : 0.08	i : 0.08	d : 0.06	g : 0.06	] : 0.06	2 : 0.06	= : 0.04	4 : 0.04	: : 0.02	> : 0.02	a : 0.02	h : 0.02	
e : 0.16	3 : 0.08	] : 0.08	g : 0.08	b : 0.08	i : 0.08	c : 0.08	2 : 0.08	d : 0.06	f : 0.06	= : 0.06	: : 0.02	> : 0.02	4 : 0.02	h : 0.02	
e : 0.12	: : 0.10	d : 0.08	3 : 0.08	g : 0.08	f : 0.08	c : 0.08	= : 0.06	] : 0.06	b : 0.06	4 : 0.06	a : 0.04	2 : 0.04	> : 0.02	h : 0.02	

#score	714.8882809546225
#seq	49
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_transcript_m2_run1.txt

#BEAR
[===========oooooo==========	chr2:234749376-234749653(-)$1	277	220	248	14.7630
ffff!!ffffffooooooffffff333f	chr12:104335087-104335311(+)$1	224	11	39	12.1421
gggggg[ccc[bboooooobb]ccc]gg	chr5:79732713-79732951(+)$1	238	22	50	11.8696
=====[ccc[cccnnnnnccc]ccc===	chr6:138199718-138199978(+)$1	260	147	175	10.9572
bb####a[ddddoooooodddd]a22bb	chr9:135204918-135205193(-)$1	275	52	80	11.7212
==============mmmm==========	chr2:153532972-153533229(-)$1	257	30	58	10.5778
""ccc[ffffffooooooffffff22cc	chr16:8722628-8722870(+)$1	242	187	215	11.8960
!!ccc[bb!!bboooooobbbbccc]hh	chr17:27591445-27591706(-)$1	261	137	165	12.2661
hhhhhccc[cccooooooccc22ccc77	chr6:158923489-158923714(+)$1	225	148	176	12.0862
a[bb!!ccc[bboooooobbcccbb]a2	chr7:99499390-99499688(-)$1	298	43	71	12.3034
eeea[bb[ddddoooooodddd]bb]a]	chr2:171857513-171857762(-)$1	249	7	35	11.9111
cccbb[ffffffooooooffffff]bbd	chr2:138750115-138750388(+)$1	273	104	132	10.8778
ee!!ccc"""ddddllldddd333ccc2	chrX:106308857-106309104(-)$1	247	76	104	9.9910
ddd!!ccc!!bboooooobb]ccc]ddd	chr10:46953336-46953605(+)$1	269	185	213	12.5520
:eeeee"""cccooooooccceeeee::	chr11:96017321-96017594(-)$1	273	244	272	10.1496
Fccc[bbddddoooooodddd]bb]ccc	chr11:65268102-65268311(+)$1	209	17	45	10.3245
c[dddd"""cccooooooccc]dddd]c	chr12:95888676-95888981(+)$1	305	217	245	13.2801
ggggggg"""cccmmmmccc22gggggg	chr14:70452246-70452518(+)$1	272	37	65	10.1870
ggggbb"""cccooooooccc333bb]g	chr9:71682920-71683177(+)$1	257	29	57	14.3575
ccc!!bb[ddddoooooodddd]bb22c	chr10:38407496-38407723(+)$1	227	128	156	12.0418
ffffccc!!cccooooooccc22ccc22	chr3:184101218-184101522(+)$1	304	117	145	13.8001
ffffa[ffffffooooooffffff22a]	chr2:54871375-54871621(+)$1	246	94	122	11.5373
fff[bb####bboooooobb22bb]fff	chr13:113574939-113575214(+)$1	275	77	105	11.9926
:iiiiiiiiiaooooooa]iiiiiiiii	chr6:129910039-129910306(-)$1	267	78	106	11.8741
cc"""ccc[cccmmmmccc]cccccc]h	chr1:146675819-146676039(-)$1	220	22	50	9.1881
ddd[bb!!ddddoooooodddd333bb2	chr8:593327-593606(-)$1	279	160	188	12.0336
d!!eeeee[bb[aooooooa]bb333ee	chr10:61003727-61003968(+)$1	241	150	178	10.7065
===="""eeeeeooooooeeeee22===	chr7:158212373-158212614(-)$1	241	145	173	12.2803
###ccccccrrrrrrrrrccc]ccc333	chr7:94539157-94539400(+)$1	243	45	73	9.6399
e!!ccc[a!!cccmmmmccc333a]ccc	chr16:24802647-24802909(+)$1	262	197	225	10.5008
dd[iiiiiiiiiooooooiiiiiiiii2	chr11:965339-965612(+)$1	273	110	138	13.5218
!===========oooooo==========	chr11:65267367-65267571(+)$1	204	136	164	14.7852
eeee[ccc[cccoooooocccccc]eee	chr9:32543531-32543793(-)$1	262	175	203	13.1746
gggg"""a[ddddmmmmdddd]a4444g	chr7:43741012-43741279(-)$1	267	72	100	9.7107
cc[ccc####bbnnnnnbb4444ccc22	chr6:118018768-118019055(+)$1	287	149	177	10.0032
dd"""bb!!cccooooooccc]bb4444	chr14:38102758-38103018(+)$1	260	23	51	14.0049
!!ccc[a!!a[bboooooobb]a22a]c	chr20:3482969-3483232(+)$1	263	89	117	12.1530
iiiiiii"""bboooooobb333iiiii	chr11:108117686-108117952(+)$1	266	121	149	14.8773
i[ccc####ccclllccc4444ccc]ii	chr2:188397471-188397713(+)$1	242	48	76	10.5104
cc!!ccc"""bboooooobb333ccc22	chr21:40570622-40570926(-)$1	304	214	242	14.4398
ggggggg!!ddddlllddddggggggg]	chr8:145693805-145694083(+)$1	278	45	73	9.6656
:gggggggddddoooooodddd]ggggg	chr12:26869010-26869253(-)$1	243	188	216	11.7989
ggggggg"""ccclllccc333gggggg	chr6:2303870-2304164(+)$1	294	30	58	10.9550
====="""ddddnnnnndddd]======	chr20:36641088-36641345(-)$1	257	115	143	10.8005
c!!a[gggggggooooooggggggga22	chr17:6830496-6830745(+)$1	249	162	190	13.2547
[dddd[ffffffooooooffffff]ddd	chr2:3472163-3472395(+)$1	232	70	98	10.9365
:ggggggg[cccnnnnnccc22gggggg	chr2:232325101-232325352(-)$1	251	59	87	9.4950
::ccc####cccooooooccc]ccc:::	chr19:53117672-53117952(-)$1	280	146	174	10.1072
gggg$$$$$cccooooooccc22ggggg	chr7:132990659-132990912(+)$1	253	100	128	13.8206
=========:bboooooobbccc[cccs	chr12:6710558-6710795(-)$1	237	150	178	11.8825
dddd!!ffffffooooooffffff4444	chr8:17761173-17761397(-)$1	224	61	89	11.9179
iiiiiiii[cccooooooccc]iiiiii	chr9:71842664-71842886(+)$1	222	130	158	14.9446
e[eeeee[ddddoooooodddd]eeeee	chr8:17760338-17760564(-)$1	226	46	74	11.0088
dddd[gggggggooooooggggggg]dd	chr6:144768778-144769017(+)$1	239	85	113	12.2084

#otherMatches

#Seq PSSM
GCUCGUGCCAUCACGAGGGAUGGCACGA	chr2:234749376-234749653(-)$1	277	220	248	14.7630
CUGAAUAUGUACCACAUAGUACAUUGCU	chr12:104335087-104335311(+)$1	224	11	39	12.1421
AGUUCCCUGAAUGAAAAAACACUCAAGG	chr5:79732713-79732951(+)$1	238	22	50	11.8696
GGGGCUCCCUGGCAUGGCGCUCGGGGCC	chr6:138199718-138199978(+)$1	260	147	175	10.9572
CUCCUGCAUCUUAUAAUAAAGAAGAAAG	chr9:135204918-135205193(-)$1	275	52	80	11.7212
GCUGCUGUUGUUgcagcagcagcagcgg	chr2:153532972-153533229(-)$1	257	30	58	10.5778
UUUGGACGUGGUGAGAAGACCACGAGCC	chr16:8722628-8722870(+)$1	242	187	215	11.8960
UCCAGAUCAAUGAAGGACCAGACUGCCU	chr17:27591445-27591706(-)$1	261	137	165	12.2661
CCUCAUCCACGCUACCCUGCGGAGGAAC	chr6:158923489-158923714(+)$1	225	148	176	12.0862
aguuuccagaccauguaaggcugaggua	chr7:99499390-99499688(-)$1	298	43	71	12.3034
gucagugcuguuaaagaggacaccagua	chr2:171857513-171857762(-)$1	249	7	35	11.9111
ccaggcagcccagacaaguggguucccc	chr2:138750115-138750388(+)$1	273	104	132	10.8778
gccuauaacguauaaaauauaauauauu	chrX:106308857-106309104(-)$1	247	76	104	9.9910
CAGCAUGGUUCAUUGCGUUGUCCACCUG	chr10:46953336-46953605(+)$1	269	185	213	12.5520
AGUGGUACACAUCAAGAAAUGGCUACAU	chr11:96017321-96017594(-)$1	273	244	272	10.1496
AGGUAGCAGGCGGCUUGGCUUGGCAACC	chr11:65268102-65268311(+)$1	209	17	45	10.3245
ACUUUGGAACACAUAUAAGUGGUAAAUU	chr12:95888676-95888981(+)$1	305	217	245	13.2801
ucugaaaauauucaauggaaaauuucag	chr14:70452246-70452518(+)$1	272	37	65	10.1870
ggagcucaaucuagcaagggagacagac	chr9:71682920-71683177(+)$1	257	29	57	14.3575
ACACACACAGGGGAGAAACCCUAUGAAU	chr10:38407496-38407723(+)$1	227	128	156	12.0418
AGGUGGUGGCCAUGACACUGGAGACCAA	chr3:184101218-184101522(+)$1	304	117	145	13.8001
AGCUCAUUUCAGAAAAGCCUGAGACGGA	chr2:54871375-54871621(+)$1	246	94	122	11.5373
GGUGCUGGUGGUGGGUGGGCGGGGGGCU	chr13:113574939-113575214(+)$1	275	77	105	11.9926
cagcccuucccaucacagagggagggcu	chr6:129910039-129910306(-)$1	267	78	106	11.8741
CCUCUGUAAUGUGUAAACAAUAUGGUAA	chr1:146675819-146676039(-)$1	220	22	50	9.1881
CCCCCUGGAUGGAGCAUCCCAUGAGAGC	chr8:593327-593606(-)$1	279	160	188	12.0336
caagggauaaggaacugaaugcuagagu	chr10:61003727-61003968(+)$1	241	150	178	10.7065
GUGAGCUUCUGAGUCCGGUCAGACAUCA	chr7:158212373-158212614(-)$1	241	145	173	12.2803
AUUGCAGAUGAACCUCUAGUCUUGCUUU	chr7:94539157-94539400(+)$1	243	45	73	9.6399
CUACAGGCAAACCUCCUGGUACAGGCUG	chr16:24802647-24802909(+)$1	262	197	225	10.5008
UGUGAUCUUUAUCCUUUAAUGAGGGUUG	chr11:965339-965612(+)$1	273	110	138	13.5218
AUUUAAUUUCUGGUGGUGCAGAAGUUAG	chr11:65267367-65267571(+)$1	204	136	164	14.7852
GUGAACUUACAGUUCUUUUUGGAGCUCA	chr9:32543531-32543793(-)$1	262	175	203	13.1746
uguaaauuguucuaccaagaagacacau	chr7:43741012-43741279(-)$1	267	72	100	9.7107
agacagaaaaucaacaagaaacauugaa	chr6:118018768-118019055(+)$1	287	149	177	10.0032
ugccagcagguauuucuuuauagcaaca	chr14:38102758-38103018(+)$1	260	23	51	14.0049
uuggaagaacaacauagucguagagcau	chr20:3482969-3483232(+)$1	263	89	117	12.1530
CCGUCAAAGAAAAUUUGAUUGAAUUGAU	chr11:108117686-108117952(+)$1	266	121	149	14.8773
ucagccccauggagcccagcaagcuaag	chr2:188397471-188397713(+)$1	242	48	76	10.5104
AAAAACCAAACAAUUUUAUGAAAGGUAA	chr21:40570622-40570926(-)$1	304	214	242	14.4398
GCUUAUCUGAGGCAGGGCCUGGUAAGUG	chr8:145693805-145694083(+)$1	278	45	73	9.6656
UGGAAAAGGAAUGAAUGUGUUCAUUUUU	chr12:26869010-26869253(-)$1	243	188	216	11.7989
ugguggcaaaggucaaaucaaagccauu	chr6:2303870-2304164(+)$1	294	30	58	10.9550
GUCCCCUUCUGAAGGCCUUAGUGGGACU	chr20:36641088-36641345(-)$1	257	115	143	10.8005
UAUGUGCUAUUUGAUAAAAGAUAGCCUG	chr17:6830496-6830745(+)$1	249	162	190	13.2547
UCGUGUGUAGAUGAUAAAGUUUAUCCAU	chr2:3472163-3472395(+)$1	232	70	98	10.9365
GUUUGACAUCUUGUCCAGAGCCUGUCAA	chr2:232325101-232325352(-)$1	251	59	87	9.4950
AAAGGAUGAUGCACAAAAGCAGCCUGUU	chr19:53117672-53117952(-)$1	280	146	174	10.1072
UACAUCAAAUCGACUAGCCGAGUUGUGC	chr7:132990659-132990912(+)$1	253	100	128	13.8206
GGUUUUGGGUGCAAAAUGGCGGGAGUUC	chr12:6710558-6710795(-)$1	237	150	178	11.8825
ggaugaggaggaggaauguucucugaua	chr8:17761173-17761397(-)$1	224	61	89	11.9179
AUGACAUGAAUAUUCUCUUGUACAUGUC	chr9:71842664-71842886(+)$1	222	130	158	14.9446
cugggguugguggauauauaccuacucu	chr8:17760338-17760564(-)$1	226	46	74	11.0088
CUGACUCAAAGAUGGGAUUCUUUGGUUC	chr6:144768778-144769017(+)$1	239	85	113	12.2084

#DB
.(((((((((((......))))))))))	chr2:234749376-234749653(-)$1	1	220	248	14.7630
((((..((((((......))))))...)	chr12:104335087-104335311(+)$1	1	11	39	12.1421
((((((.(((.((......)).))).))	chr5:79732713-79732951(+)$1	1	22	50	11.8696
(((((.(((.(((.....))).))))))	chr6:138199718-138199978(+)$1	1	147	175	10.9572
((....(.((((......)))).)..))	chr9:135204918-135205193(-)$1	1	52	80	11.7212
((((((((((((((....))))))))))	chr2:153532972-153533229(-)$1	1	30	58	10.5778
..(((.((((((......))))))..))	chr16:8722628-8722870(+)$1	1	187	215	11.8960
..(((.((..((......))))))).))	chr17:27591445-27591706(-)$1	1	137	165	12.2661
((((((((.(((......)))..)))..	chr6:158923489-158923714(+)$1	1	148	176	12.0862
(.((..(((.((......))))))).).	chr7:99499390-99499688(-)$1	1	43	71	12.3034
((((.((.((((......)))).)).).	chr2:171857513-171857762(-)$1	1	7	35	11.9111
)))((.((((((......)))))).))(	chr2:138750115-138750388(+)$1	1	104	132	10.8778
((..(((...((((...))))...))).	chrX:106308857-106309104(-)$1	1	76	104	9.9910
(((..(((..((......)).))).)))	chr10:46953336-46953605(+)$1	1	185	213	12.5520
.(((((...(((......))))))))..	chr11:96017321-96017594(-)$1	1	244	272	10.1496
((((.((((((......)))).)).)))	chr11:65268102-65268311(+)$1	1	17	45	10.3245
(.((((...(((......))).)))).)	chr12:95888676-95888981(+)$1	1	217	245	13.2801
(((((((...(((....)))..))))))	chr14:70452246-70452518(+)$1	1	37	65	10.1870
((((((...(((......)))...)).)	chr9:71682920-71683177(+)$1	1	29	57	14.3575
(((..((.((((......)))).))..)	chr10:38407496-38407723(+)$1	1	128	156	12.0418
(((((((..(((......)))..)))..	chr3:184101218-184101522(+)$1	1	117	145	13.8001
(((((.((((((......))))))..).	chr2:54871375-54871621(+)$1	1	94	122	11.5373
(((.((....((......))..)).)))	chr13:113574939-113575214(+)$1	1	77	105	11.9926
.((((((((((......).)))))))))	chr6:129910039-129910306(-)$1	1	78	106	11.8741
((...(((.(((....))).)))))).)	chr1:146675819-146676039(-)$1	1	22	50	9.1881
(((.((..((((......))))...)).	chr8:593327-593606(-)$1	1	160	188	12.0336
(..(((((.((.(......).))...))	chr10:61003727-61003968(+)$1	1	150	178	10.7065
((((...(((((......)))))..)))	chr7:158212373-158212614(-)$1	1	145	173	12.2803
...((((((.........))).)))...	chr7:94539157-94539400(+)$1	1	45	73	9.6399
(..(((.(..(((....)))...).)))	chr16:24802647-24802909(+)$1	1	197	225	10.5008
((.(((((((((......))))))))).	chr11:965339-965612(+)$1	1	110	138	13.5218
.(((((((((((......))))))))))	chr11:65267367-65267571(+)$1	1	136	164	14.7852
((((.(((.(((......)))))).)))	chr9:32543531-32543793(-)$1	1	175	203	13.1746
((((...(.((((....)))).)....)	chr7:43741012-43741279(-)$1	1	72	100	9.7107
((.(((....((.....))....)))..	chr6:118018768-118019055(+)$1	1	149	177	10.0032
((...((..(((......))).))....	chr14:38102758-38103018(+)$1	1	23	51	14.0049
..(((.(..(.((......)).)..).)	chr20:3482969-3483232(+)$1	1	89	117	12.1530
(((((((...((......))...)))))	chr11:108117686-108117952(+)$1	1	121	149	14.8773
(.(((....(((...)))....))).))	chr2:188397471-188397713(+)$1	1	48	76	10.5104
((..(((...((......))...)))..	chr21:40570622-40570926(-)$1	1	214	242	14.4398
(((((((..((((...))))))))))).	chr8:145693805-145694083(+)$1	1	45	73	9.6656
.(((((((((((......)))).)))))	chr12:26869010-26869253(-)$1	1	188	216	11.7989
(((((((...(((...)))...))))))	chr6:2303870-2304164(+)$1	1	30	58	10.9550
(((((...((((.....)))).))))))	chr20:36641088-36641345(-)$1	1	115	143	10.8005
(..(.(((((((......))))))))..	chr17:6830496-6830745(+)$1	1	162	190	13.2547
.((((.((((((......)))))).)))	chr2:3472163-3472395(+)$1	1	70	98	10.9365
.(((((((.(((.....)))..))))))	chr2:232325101-232325352(-)$1	1	59	87	9.4950
..(((....(((......))).)))...	chr19:53117672-53117952(-)$1	1	146	174	10.1072
((((.....(((......)))..)))))	chr7:132990659-132990912(+)$1	1	100	128	13.8206
))))))))).((......))(((.(((.	chr12:6710558-6710795(-)$1	1	150	178	11.8825
((((..((((((......))))))....	chr8:17761173-17761397(-)$1	1	61	89	11.9179
((((((((.(((......))).))))))	chr9:71842664-71842886(+)$1	1	130	158	14.9446
(.(((((.((((......)))).)))))	chr8:17760338-17760564(-)$1	1	46	74	11.0088
((((.(((((((......))))))).))	chr6:144768778-144769017(+)$1	1	85	113	12.2084

#PSSM
g : 0.12	c : 0.12	d : 0.12	= : 0.09	e : 0.09	: : 0.09	f : 0.07	! : 0.05	i : 0.05	[ : 0.03	b : 0.01	" : 0.01	h : 0.01	a : 0.01	F : 0.01	# : 0.01	
g : 0.16	= : 0.12	d : 0.12	c : 0.11	! : 0.09	f : 0.07	[ : 0.07	e : 0.07	i : 0.05	b : 0.01	" : 0.01	h : 0.01	# : 0.01	: : 0.01	
g : 0.16	c : 0.14	= : 0.12	d : 0.11	! : 0.09	f : 0.07	e : 0.07	i : 0.05	# : 0.03	" : 0.03	[ : 0.03	h : 0.01	b : 0.01	
g : 0.16	c : 0.16	= : 0.12	! : 0.07	e : 0.07	d : 0.07	i : 0.07	f : 0.05	b : 0.03	a : 0.03	[ : 0.03	" : 0.03	# : 0.01	h : 0.01	
c : 0.20	= : 0.11	g : 0.11	! : 0.09	[ : 0.09	b : 0.07	i : 0.07	" : 0.07	e : 0.05	d : 0.03	# : 0.01	h : 0.01	a : 0.01	$ : 0.01	
c : 0.18	g : 0.14	[ : 0.12	b : 0.12	= : 0.07	i : 0.07	! : 0.05	# : 0.05	e : 0.05	" : 0.05	d : 0.01	$ : 0.01	
c : 0.18	g : 0.12	f : 0.11	" : 0.11	b : 0.09	= : 0.07	# : 0.07	i : 0.07	[ : 0.03	a : 0.03	e : 0.03	! : 0.01	$ : 0.01	
" : 0.16	c : 0.14	f : 0.11	! : 0.09	= : 0.07	[ : 0.07	# : 0.07	g : 0.07	i : 0.05	e : 0.03	a : 0.03	b : 0.01	d : 0.01	$ : 0.01	
d : 0.14	" : 0.14	! : 0.12	[ : 0.12	f : 0.11	= : 0.07	c : 0.07	# : 0.07	i : 0.03	g : 0.03	e : 0.01	$ : 0.01	
c : 0.25	d : 0.18	f : 0.11	" : 0.09	= : 0.05	! : 0.05	[ : 0.03	# : 0.03	i : 0.03	g : 0.03	b : 0.01	e : 0.01	r : 0.01	a : 0.01	: : 0.01	
c : 0.31	d : 0.20	b : 0.16	f : 0.11	= : 0.05	[ : 0.03	g : 0.03	a : 0.01	e : 0.01	r : 0.01	i : 0.01	
c : 0.31	b : 0.18	d : 0.18	f : 0.11	= : 0.05	o : 0.03	g : 0.03	[ : 0.01	e : 0.01	r : 0.01	i : 0.01	
o : 0.68	c : 0.07	d : 0.05	n : 0.05	b : 0.03	= : 0.01	m : 0.01	a : 0.01	r : 0.01	l : 0.01	
o : 0.74	n : 0.07	m : 0.07	l : 0.05	= : 0.01	d : 0.01	r : 0.01	
o : 0.74	m : 0.09	n : 0.07	l : 0.07	r : 0.01	
o : 0.74	m : 0.09	n : 0.07	l : 0.05	r : 0.01	c : 0.01	
o : 0.74	n : 0.07	m : 0.07	c : 0.05	l : 0.01	r : 0.01	d : 0.01	
o : 0.70	c : 0.11	d : 0.09	n : 0.01	m : 0.01	a : 0.01	r : 0.01	b : 0.01	
c : 0.31	d : 0.20	b : 0.14	f : 0.11	= : 0.05	o : 0.05	g : 0.03	] : 0.01	e : 0.01	i : 0.01	4 : 0.01	
c : 0.27	d : 0.20	b : 0.16	f : 0.11	= : 0.05	i : 0.03	4 : 0.03	g : 0.03	] : 0.01	a : 0.01	e : 0.01	3 : 0.01	
c : 0.27	d : 0.18	f : 0.11	3 : 0.07	= : 0.05	b : 0.05	2 : 0.05	g : 0.05	] : 0.03	i : 0.03	4 : 0.03	e : 0.01	
] : 0.20	f : 0.11	d : 0.11	2 : 0.11	3 : 0.11	c : 0.09	= : 0.05	g : 0.05	b : 0.03	e : 0.03	i : 0.03	4 : 0.03	
c : 0.20	f : 0.11	3 : 0.11	g : 0.11	] : 0.09	= : 0.07	b : 0.07	2 : 0.05	i : 0.05	e : 0.03	a : 0.03	d : 0.01	4 : 0.01	
c : 0.24	g : 0.14	f : 0.11	b : 0.11	= : 0.07	3 : 0.07	i : 0.07	a : 0.03	e : 0.03	2 : 0.03	d : 0.01	4 : 0.01	[ : 0.01	
c : 0.24	g : 0.14	] : 0.12	2 : 0.09	= : 0.07	b : 0.07	i : 0.07	3 : 0.05	4 : 0.05	e : 0.03	d : 0.01	
c : 0.16	= : 0.11	] : 0.11	g : 0.11	2 : 0.07	i : 0.07	3 : 0.05	b : 0.05	d : 0.05	e : 0.05	4 : 0.05	a : 0.03	f : 0.01	: : 0.01	
g : 0.12	= : 0.11	c : 0.09	2 : 0.09	i : 0.09	] : 0.07	b : 0.05	a : 0.05	d : 0.05	e : 0.05	4 : 0.05	3 : 0.03	: : 0.03	h : 0.01	7 : 0.01	f : 0.01	
g : 0.14	2 : 0.14	= : 0.11	c : 0.11	d : 0.07	i : 0.07	] : 0.05	e : 0.05	f : 0.03	h : 0.03	: : 0.03	4 : 0.03	b : 0.01	7 : 0.01	3 : 0.01	s : 0.01	

#score	639.788183966996
#seq	54
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_UTR_m2_run2.txt

#BEAR
[eeeee"""bb!!cccmmmmccc22bb4444eeeee	chr1:21501036-21501303(-)$1	267	55	91	12.3037
dcccggggggg[cccammmma]ccc]ggggggg:hh	chr2:152266678-152266997(+)$1	319	26	62	12.8081
$$ffffff[ccc!!bbmmmmbb22ccc]ffffff22	chr17:48796911-48797138(+)$1	227	137	173	14.2877
ccbb[ccc!!ccc[bbmmmmbb]ccc22ccc333bb	chr16:777314-777622(+)$1	308	201	237	15.3714
:eeeee[cccdddd[ammmma]dddd4444ccc333	chr17:80866136-80866390(+)$1	254	42	78	11.8736
iiiiiiii[eeeee[bblllbb]eeeee]iiiiiii	chr1:154150431-154150701(-)$1	270	197	233	12.1788
ddd####bbccc!!bbmmmmbb22ccc]bb4444dd	chr3:196295462-196295914(+)$1	452	23	59	14.2420
eee[eeeee[ccc[bbmmmmbb]ccc]eeeeeeeee	chr4:152020860-152021119(+)$1	259	2	38	14.4085
:::==========[bbmmmmbb22==========ff	chr1:20236140-20236367(+)$1	227	151	187	14.7496
bbeeeee!!gggggggmmmmgggggggeeeee]bbe	chr17:73389654-73389947(-)$1	293	148	184	11.7911
f==========[acccnnnnnccc]a]=========	chr22:21801286-21801544(+)$1	258	13	49	12.3873
gg"""ddddccc!!bbmmmmbb22ccc22ddddggg	chr17:75177040-75177365(+)$1	325	150	186	14.6269
::ggggggg[bb!!bbmmmmbb]bb]ggggggg:bb	chr16:70472780-70473067(-)$1	287	39	75	12.2040
dddd[eeeee!!bbbbmmmmbb]bb]eeeee22ddd	chr4:3513340-3513617(-)$1	277	221	257	12.6350
eeee!!ffffff[cccmmmmccc333ffffff22ee	chr1:6259356-6259640(-)$1	284	71	107	12.5935
i==========[bb[bblllbb]bb22=========	chr3:39093835-39094123(+)$1	288	188	224	13.4046
:=============bbmmmmbb]=============	chr12:121137116-121137391(+)$1	275	147	183	17.4371
fffggggggg[bb[bbmmmmbb]bbggggggg333f	chr3:182656586-182656891(-)$1	305	163	199	15.2088
c[dddd"""bb!!cccmmmmccc]bb333dddd]cc	chr9:140446270-140446533(+)$1	263	68	104	12.9850
[ccc[bb[dddd[cccmmmmcccdddd]bb]ccc22	chr21:44269735-44270004(-)$1	269	123	159	11.7414
ccc"""ffffff!!bbmmmmbb22ffffff22ccc]	chr3:183705068-183705371(-)$1	303	254	290	13.9187
cc!!dddd[gggggggmmmmggggggg]dddd22cc	chr19:54970166-54970417(+)$1	251	105	141	12.6761
ee[dddd"""ccccccmmmmccc]cccdddd333ee	chr11:64846047-64846293(-)$1	246	92	128	13.4024
d[ccc[a[eeeee!!ammmma22eeeeea]cccddd	chr19:8550849-8551139(+)$1	290	58	94	11.7159
###==========[bbmmmmbb]==========bba	chr16:1360062-1360335(+)$1	273	122	158	17.3255
b"""dddd[bb!!cccmmmmccc]bb]dddd333bb	chr16:2301257-2301524(-)$1	267	30	66	12.9471
f[bbdddd[ccc[ccclllccc]ccc333dddd333	chr11:236034-236360(-)$1	326	134	170	11.2924
hhhhhhhccc####bbmmmmbb4444ccc]hhhhhh	chr5:177631575-177631849(+)$1	274	176	212	12.7177
c"""bbbb[dddd[bbmmmmbb]ddddbb]bb4444	chr21:35470846-35471115(+)$1	269	28	64	13.0478
gggeeeee[ccc"""bblllbb]ccceeeee22ggg	chr17:74261444-74261704(+)$1	260	208	244	12.5806
=====!!ddddccc[ammmmaccc22dddd======	chr19:17439824-17440077(-)$1	253	203	239	13.6401
:iiiiiiiii[ddddammmma]dddd]iiiiiiiii	chr6:44215502-44215742(+)$1	240	158	194	13.5278
ggg"""dddd[bbcccmmmmccc]bb]dddd22ggg	chr5:138630427-138630680(+)$1	253	122	158	12.4861
iiiii"""ccc"""bbmmmmbb]ccc22iiiiiiii	chr17:79879034-79879302(-)$1	268	92	128	16.7426
cc!!==========bbmmmmbb55555=========	chr15:64793542-64793800(+)$1	258	164	200	13.5869
Diiiiiiiii[ddddammmma]dddd]iiiiiiiii	chr6:44215564-44215824(+)$1	260	96	132	13.3945
iiiiii!!ccc!!cccmmmmcccccc]iiiiiiiii	chr1:228582201-228582437(-)$1	236	5	41	15.6759
gggggg[gggggggbbmmmmbb]ggggggg]ggggg	chr19:10766035-10766288(+)$1	253	28	64	15.9475
dd[ccc[dddd[a[bbmmmmbb]a]ddddcccdddd	chr7:26241870-26242182(+)$1	312	93	129	13.5502
eeeeeeeee[ccccccmmmmccc22ccc]eeeee]e	chr19:14529711-14530038(-)$1	327	99	135	12.2997
====[ffffff[ddddmmmmdddd]ffffff22===	chr5:86564044-86564350(+)$1	306	47	83	11.7844
ddd!!iiiiiiiiibbmmmmbb]iiiiiiiii22dd	chr7:155573699-155574018(+)$1	319	181	217	16.1483
$$ffffff"""cccbbmmmmbb]cccffffff22ii	chr7:148580297-148580535(-)$1	238	162	198	14.3912
ggggggg[abbddddammmma]dddd]bb]a]gggg	chr3:33481508-33481782(-)$1	274	82	118	12.2768
ffffff"""dddd[bbmmmmbb]dddd333ffffff	chr19:54971363-54971594(+)$1	231	89	125	14.0519
$$ffffff[ccc!!bbmmmmbb22ccc]ffffff22	chr17:48796868-48797111(+)$1	243	180	216	14.2877
::gggggggdddd[bbmmmmbb]dddd333gggggg	chr12:133404808-133405079(-)$1	271	56	92	13.7839
fffa[dddd[ccc[bbmmmmbbcccdddd]a22fff	chr4:1950032-1950296(+)$1	264	209	245	13.9705
:ffffffiiiiiiiiimmmmiiiiiiiii333ffff	chr11:66408200-66408453(+)$1	253	195	231	12.7220
c[a[bb!!ccc[acccmmmmccc]a]ccc]bb]acc	chr1:8852453-8852771(-)$1	318	153	189	13.4089
''''''==========mmmm==========333ccc	chr12:123373017-123373294(-)$1	277	186	222	12.1225
b[a==========cccmmmmccc]==========]a	chr14:70234468-70234783(+)$1	315	15	51	16.1019
ff[a[ggggggg!!bblllbbggggggg]affffff	chr20:5986667-5986926(+)$1	259	217	253	11.8852
!eeeee[iiiiiiiiimmmmiiiiiiiiieeeee]d	chr17:79877655-79877953(-)$1	298	218	254	13.3965

#otherMatches

#Seq PSSM
GAUGAGAAAGUGUGGUGAUAACUUAGCGUUGCUUAU	chr1:21501036-21501303(-)$1	267	55	91	12.3037
GAGCGGGCCCAGGCCCGAAUGUGGCGUGGGCUCAGG	chr2:152266678-152266997(+)$1	319	26	62	12.8081
GGCGGGUGCCUGGGCUGGUGGGAACAGCCGCCCGAA	chr17:48796911-48797138(+)$1	227	137	173	14.2877
GUCAAGGUCAUCCCCGUGCUCGAGGACAACUACAUG	chr16:777314-777622(+)$1	308	201	237	15.3714
AUCUGCAGCUggggucugaugucuccugaaaguaaa	chr17:80866136-80866390(+)$1	254	42	78	11.8736
GAGAAAUGUGUGUUGUUACAGAGAACAUCUAUUUUU	chr1:154150431-154150701(-)$1	270	197	233	12.1788
AGUCACAUCCGGGGCCGAGAGGAACCGCGAACGAGC	chr3:196295462-196295914(+)$1	452	23	59	14.2420
AAGUGUAAGUCGCGACUGUCGUGGCGUCUUGCUUUU	chr4:152020860-152021119(+)$1	259	2	38	14.4085
UUAUUAAAGAAUAUUGGGAACAUUUAUUUUUUAAAU	chr1:20236140-20236367(+)$1	227	151	187	14.7496
GCGAGGCUAAGCCCAGAGCGCUGGGUUGCUUCAGCA	chr17:73389654-73389947(-)$1	293	148	184	11.7911
UGGGCUGGGUCACGUGGGUCUCGCUGGGACCUGGUC	chr22:21801286-21801544(+)$1	258	13	49	12.3873
UGUCUGAGCCAGCGUCUGAGGAAACUGAUGUUCUAU	chr17:75177040-75177365(+)$1	325	150	186	14.6269
gaggguugggccaggcaagggcgggACUAGCCCACG	chr16:70472780-70473067(-)$1	287	39	75	12.2040
GGAUCUUGGCUUGACUGUUGAGAUCUGCCAAACAUC	chr4:3513340-3513617(-)$1	277	221	257	12.6350
GCCGAGCCCGGCAUCUACCCAGGCUCGCUGGGGACG	chr1:6259356-6259640(-)$1	284	71	107	12.5935
CGGGGUUUCUGCUGAGGAUUCCGCACUUGGGAGCCC	chr3:39093835-39094123(+)$1	288	188	224	13.4046
GCAGAGCUGGGCUGAGAGUUCUGCAGUCUAGCUCUG	chr12:121137116-121137391(+)$1	275	147	183	17.4371
UGCUGAUGGCUGGUGCUUUGGCUCUGUUAUUGUUUG	chr3:182656586-182656891(-)$1	305	163	199	15.2088
UGCGACGCAGCGGUCGGAAGCGGAGCAAGGUCGAGG	chr9:140446270-140446533(+)$1	263	68	104	12.9850
CCGGUGGUGGCGGCAGCUGUCUGUGUUUCUCCUGUU	chr21:44269735-44270004(-)$1	269	123	159	11.7414
AGAAAACUAGAGGACUGUCGAGGAUUUUAGAGUCUG	chr3:183705068-183705371(-)$1	303	254	290	13.9187
UGGGUGGGGAUGAGUUGCUUGACUCAUGUUUAGACG	chr19:54970166-54970417(+)$1	251	105	141	12.6761
UGCUUGGAAAUAGGCCCAGGGGCUCUGCCAGCCUCG	chr11:64846047-64846293(-)$1	246	92	128	13.4024
GGUGCCCGCAGGUAUGGGAGCUGGCCUGGAGCGCAU	chr19:8550849-8551139(+)$1	290	58	94	11.7159
ACAUCGCUGGCUCGCGGGGGUGGGGGCCGGCGAGCG	chr16:1360062-1360335(+)$1	273	122	158	17.3255
GGGAUCGGGCCGGGGCCGGGGCCAGGACCGGGAACU	chr16:2301257-2301524(-)$1	267	30	66	12.9471
GGCUGUCGGCUGGUGCUUGGCGGCAGGGACGAUGUG	chr11:236034-236360(-)$1	326	134	170	11.2924
GCCGGCGGGCGGGAGCUCUGGCGGGAGCCGCGCCGG	chr5:177631575-177631849(+)$1	274	176	212	12.7177
UCAGUGCAUACUUUGCUGUUGUUAGGUUGUCAAUAU	chr21:35470846-35471115(+)$1	269	28	64	13.0478
UGCGCGGCCGACCAGGCGAAGCAGUUGCUGCAGGCG	chr17:74261444-74261704(+)$1	260	208	244	12.5806
GCGCCCAGGGAGGGUGAGUCCCCCGAUCCCGGCGCC	chr19:17439824-17440077(-)$1	253	203	239	13.6401
UGGCCGACGCAUGUCCGGCAGUGACGAGUGUCGGCC	chr6:44215502-44215742(+)$1	240	158	194	13.5278
GGCCCUGUUCUGUGGAAUAUUCCUAUUGGAUCAGUU	chr5:138630427-138630680(+)$1	253	122	158	12.4861
UUAGUUGUGCUUUUGCUUCUGCUGGCUUGCUGGACC	chr17:79879034-79879302(-)$1	268	92	128	16.7426
AGCAGAGUCAGGUUCCAGCUGGUUACUAGCUUGGCU	chr15:64793542-64793800(+)$1	258	164	200	13.5869
UGGCCGACGCAUGUCCGGCAGUGACGAGUGUCGGCC	chr6:44215564-44215824(+)$1	260	96	132	13.3945
UCCGGGGACACCCUGGCUCCCCAGUGACUCGGGCCC	chr1:228582201-228582437(-)$1	236	5	41	15.6759
CCCCAGUUAAUUCACCGCCUGGAUGAAUUAUUUGGG	chr19:10766035-10766288(+)$1	253	28	64	15.9475
CGCGGAUGCGCUGACCACGAGGCCCGCGCUCCCGGG	chr7:26241870-26242182(+)$1	312	93	129	13.5502
GCGCUGUGUGUUGGCCGUUGGGCACCGGGGCGCAUG	chr19:14529711-14530038(-)$1	327	99	135	12.2997
CCUGGGCUGUGGCCCUAGGAGGGGGCGCGGCGGCGG	chr5:86564044-86564350(+)$1	306	47	83	11.7844
GACAUGGAGAGAUGACGGGAGUGCGUUUCUCUGGGU	chr7:155573699-155574018(+)$1	319	181	217	16.1483
CCCAAAAAUCUGUGCCACAGGGUUACUUUUUGAAAG	chr7:148580297-148580535(-)$1	238	162	198	14.3912
GCCUCCCAGCGGUCCCGGAGGAGGAUGCGACCGGGG	chr3:33481508-33481782(-)$1	274	82	118	12.2768
AGUAGUGUGUUUUAGCAGCAGCCGGAAGUGACUGCU	chr19:54971363-54971594(+)$1	231	89	125	14.0519
GGCGGGUGCCUGGGCUGGUGGGAACAGCCGCCCGAA	chr17:48796868-48797111(+)$1	243	180	216	14.2877
GUGGGAAGUCGGGGUUUCAGGAGUCCGUGUACUUCC	chr12:133404808-133405079(-)$1	271	56	92	13.7839
CCCCGACUGUGGCUAGUUGUCUGUCCGGUGGCUGGG	chr4:1950032-1950296(+)$1	264	209	245	13.9705
cucaaaggaaaugcuuguuagagcauuuuggauuuu	chr11:66408200-66408453(+)$1	253	195	231	12.7220
GCGCUCAGCACCGGGUCACAACCACCGUGGGAUCCA	chr1:8852453-8852771(-)$1	318	153	189	13.4089
ACAGUAUUUGUAGCAGAAUGUUGCUAUGGAGAUUCA	chr12:123373017-123373294(-)$1	277	186	222	12.1225
CGCCCGCGAGGCCGCCAUUGGGCUGGCUUUGCGGAG	chr14:70234468-70234783(+)$1	315	15	51	16.1019
GCAGGGCCAUGCUAGCCUUGCGCGUGGCGCGCGGCU	chr20:5986667-5986926(+)$1	259	217	253	11.8852
UGGGGCGACUUCCCUGGGUCUAGGGGAGUGUUCCUG	chr17:79877655-79877953(-)$1	298	218	254	13.3965

#DB
.(((((...((..(((....)))..))....)))))	chr1:21501036-21501303(-)$1	1	55	91	12.3037
))))(((((((.((((....).))).))))))).((	chr2:152266678-152266997(+)$1	1	26	62	12.8081
..((((((.(((..((....))..))).))))))..	chr17:48796911-48797138(+)$1	1	137	173	14.2877
((((.(((..(((.((....)).)))..)))...))	chr16:777314-777622(+)$1	1	201	237	15.3714
.(((((.(((((((.(....).))))....)))...	chr17:80866136-80866390(+)$1	1	42	78	11.8736
((((((((.(((((.((...)).))))).)))))))	chr1:154150431-154150701(-)$1	1	197	233	12.1788
(((....(((((..((....))..))).))....))	chr3:196295462-196295914(+)$1	1	23	59	14.2420
(((.(((((.(((.((....)).))).)))))))))	chr4:152020860-152021119(+)$1	1	2	38	14.4085
...((((((((((.((....))..))))))))))((	chr1:20236140-20236367(+)$1	1	151	187	14.7496
(((((((..(((((((....)))))))))))).))(	chr17:73389654-73389947(-)$1	1	148	184	11.7911
(((((((((((.((((.....))).).)))))))))	chr22:21801286-21801544(+)$1	1	13	49	12.3873
((...(((((((..((....))..)))..)))))))	chr17:75177040-75177365(+)$1	1	150	186	14.6269
..(((((((.((..((....)).)).))))))).((	chr16:70472780-70473067(-)$1	1	39	75	12.2040
((((.(((((..((((....)).)).)))))..)))	chr4:3513340-3513617(-)$1	1	221	257	12.6350
((((..((((((.(((....)))...))))))..))	chr1:6259356-6259640(-)$1	1	71	107	12.5935
)((((((((((.((.((...)).))..)))))))))	chr3:39093835-39094123(+)$1	1	188	224	13.4046
.(((((((((((((((....)).)))))))))))))	chr12:121137116-121137391(+)$1	1	147	183	17.4371
((((((((((.((.((....)).)))))))))...)	chr3:182656586-182656891(-)$1	1	163	199	15.2088
(.((((...((..(((....))).))...)))).))	chr9:140446270-140446533(+)$1	1	68	104	12.9850
.(((.((.((((.(((....))))))).)).)))..	chr21:44269735-44270004(-)$1	1	123	159	11.7414
(((...((((((..((....))..))))))..))).	chr3:183705068-183705371(-)$1	1	254	290	13.9187
((..((((.(((((((....))))))).))))..))	chr19:54970166-54970417(+)$1	1	105	141	12.6761
((.((((...((((((....))).)))))))...))	chr11:64846047-64846293(-)$1	1	92	128	13.4024
(.(((.(.(((((..(....)..)))))).))))))	chr19:8550849-8551139(+)$1	1	58	94	11.7159
...((((((((((.((....)).))))))))))))(	chr16:1360062-1360335(+)$1	1	122	158	17.3255
(...((((.((..(((....))).)).))))...))	chr16:2301257-2301524(-)$1	1	30	66	12.9471
(.((((((.(((.(((...))).)))...))))...	chr11:236034-236360(-)$1	1	134	170	11.2924
((((((((((....((....))....))).))))))	chr5:177631575-177631849(+)$1	1	176	212	12.7177
(...((((.((((.((....)).)))))).))....	chr21:35470846-35471115(+)$1	1	28	64	13.0478
((((((((.(((...((...)).))))))))..)))	chr17:74261444-74261704(+)$1	1	208	244	12.5806
(((((..(((((((.(....))))..))))))))))	chr19:17439824-17440077(-)$1	1	203	239	13.6401
.(((((((((.(((((....).)))).)))))))))	chr6:44215502-44215742(+)$1	1	158	194	13.5278
(((...((((.(((((....))).)).))))..)))	chr5:138630427-138630680(+)$1	1	122	158	12.4861
(((((...(((...((....)).)))..))))))))	chr17:79879034-79879302(-)$1	1	92	128	16.7426
((..((((((((((((....)).....)))))))))	chr15:64793542-64793800(+)$1	1	164	200	13.5869
((((((((((.(((((....).)))).)))))))))	chr6:44215564-44215824(+)$1	1	96	132	13.3945
((((((..(((..(((....)))))).)))))))))	chr1:228582201-228582437(-)$1	1	5	41	15.6759
((((((.(((((((((....)).))))))).)))))	chr19:10766035-10766288(+)$1	1	28	64	15.9475
((.(((.((((.(.((....)).).)))))))))))	chr7:26241870-26242182(+)$1	1	93	129	13.5502
(((((((((.((((((....)))..))).))))).)	chr19:14529711-14530038(-)$1	1	99	135	12.2997
((((.((((((.((((....)))).))))))..)))	chr5:86564044-86564350(+)$1	1	47	83	11.7844
(((..(((((((((((....)).)))))))))..))	chr7:155573699-155574018(+)$1	1	181	217	16.1483
..((((((...(((((....)).)))))))))..))	chr7:148580297-148580535(-)$1	1	162	198	14.3912
(((((((.((((((((....).)))).)).).))))	chr3:33481508-33481782(-)$1	1	82	118	12.2768
((((((...((((.((....)).))))...))))))	chr19:54971363-54971594(+)$1	1	89	125	14.0519
..((((((.(((..((....))..))).))))))..	chr17:48796868-48797111(+)$1	1	180	216	14.2877
..(((((((((((.((....)).))))...))))))	chr12:133404808-133405079(-)$1	1	56	92	13.7839
((((.((((.(((.((....))))))))).)..)))	chr4:1950032-1950296(+)$1	1	209	245	13.9705
.(((((((((((((((....)))))))))...))))	chr11:66408200-66408453(+)$1	1	195	231	12.7220
(.(.((..(((.((((....))).).))).)).)))	chr1:8852453-8852771(-)$1	1	153	189	13.4089
......((((((((((....))))))))))...)))	chr12:123373017-123373294(-)$1	1	186	222	12.1225
(.((((((((((((((....))).)))))))))).)	chr14:70234468-70234783(+)$1	1	15	51	16.1019
((.(.(((((((..((...))))))))).)))))))	chr20:5986667-5986926(+)$1	1	217	253	11.8852
.(((((.(((((((((....)))))))))))))).)	chr17:79877655-79877953(-)$1	1	218	254	13.3965

#PSSM
c : 0.12	: : 0.12	d : 0.11	f : 0.11	g : 0.09	i : 0.07	e : 0.07	$ : 0.05	b : 0.05	[ : 0.03	= : 0.03	# : 0.01	h : 0.01	D : 0.01	' : 0.01	! : 0.01	
e : 0.12	c : 0.11	i : 0.09	= : 0.09	g : 0.09	f : 0.09	[ : 0.09	d : 0.07	$ : 0.05	: : 0.05	" : 0.03	b : 0.01	# : 0.01	h : 0.01	' : 0.01	
e : 0.12	f : 0.12	g : 0.11	i : 0.09	= : 0.09	c : 0.07	d : 0.07	" : 0.05	[ : 0.05	b : 0.03	! : 0.03	a : 0.03	: : 0.01	# : 0.01	h : 0.01	' : 0.01	
= : 0.14	e : 0.12	f : 0.09	i : 0.09	" : 0.09	g : 0.09	c : 0.07	d : 0.05	! : 0.05	b : 0.03	[ : 0.03	a : 0.03	# : 0.01	h : 0.01	' : 0.01	
= : 0.14	e : 0.12	g : 0.11	[ : 0.11	f : 0.09	i : 0.09	d : 0.09	" : 0.05	! : 0.03	c : 0.03	b : 0.03	# : 0.01	h : 0.01	' : 0.01	
e : 0.14	g : 0.12	= : 0.12	d : 0.12	f : 0.11	i : 0.09	b : 0.05	" : 0.05	c : 0.03	! : 0.03	# : 0.01	[ : 0.01	h : 0.01	' : 0.01	
= : 0.14	f : 0.12	d : 0.12	g : 0.11	e : 0.09	" : 0.07	[ : 0.07	i : 0.07	! : 0.05	b : 0.03	c : 0.01	# : 0.01	a : 0.01	h : 0.01	
= : 0.14	d : 0.14	g : 0.11	f : 0.11	i : 0.11	" : 0.09	e : 0.07	c : 0.05	! : 0.05	[ : 0.05	b : 0.03	
[ : 0.14	= : 0.14	g : 0.11	d : 0.11	" : 0.09	c : 0.09	i : 0.09	e : 0.07	f : 0.05	! : 0.03	b : 0.01	a : 0.01	
c : 0.20	= : 0.14	d : 0.12	g : 0.11	i : 0.09	b : 0.07	[ : 0.07	e : 0.05	f : 0.05	" : 0.03	! : 0.01	
c : 0.25	= : 0.14	d : 0.12	b : 0.09	g : 0.09	[ : 0.07	f : 0.05	i : 0.05	e : 0.03	! : 0.01	# : 0.01	" : 0.01	
c : 0.24	d : 0.14	[ : 0.11	= : 0.11	! : 0.09	g : 0.07	b : 0.05	i : 0.05	e : 0.03	f : 0.03	# : 0.01	" : 0.01	
! : 0.20	c : 0.14	d : 0.14	= : 0.11	b : 0.07	g : 0.05	a : 0.05	[ : 0.05	i : 0.05	e : 0.03	" : 0.03	# : 0.01	
c : 0.29	[ : 0.18	! : 0.14	d : 0.09	g : 0.05	= : 0.05	i : 0.05	b : 0.03	" : 0.03	e : 0.01	# : 0.01	
b : 0.46	c : 0.25	[ : 0.07	d : 0.07	g : 0.03	i : 0.03	! : 0.01	" : 0.01	= : 0.01	
b : 0.51	c : 0.24	a : 0.12	g : 0.03	i : 0.03	d : 0.01	= : 0.01	
m : 0.88	b : 0.05	l : 0.03	n : 0.01	
m : 0.88	l : 0.09	n : 0.01	
m : 0.88	l : 0.09	n : 0.01	
m : 0.88	l : 0.05	n : 0.01	c : 0.01	b : 0.01	
b : 0.51	c : 0.22	a : 0.12	g : 0.03	i : 0.03	n : 0.01	d : 0.01	= : 0.01	
b : 0.49	c : 0.25	] : 0.09	g : 0.05	i : 0.03	2 : 0.01	d : 0.01	= : 0.01	
] : 0.35	c : 0.27	2 : 0.12	d : 0.09	g : 0.05	i : 0.03	4 : 0.01	5 : 0.01	= : 0.01	
c : 0.20	d : 0.16	2 : 0.14	] : 0.11	g : 0.07	b : 0.07	= : 0.05	i : 0.05	e : 0.03	3 : 0.01	4 : 0.01	5 : 0.01	a : 0.01	
c : 0.25	d : 0.14	b : 0.12	= : 0.09	g : 0.07	2 : 0.05	] : 0.05	i : 0.05	e : 0.03	3 : 0.01	f : 0.01	4 : 0.01	5 : 0.01	a : 0.01	
c : 0.24	d : 0.18	= : 0.09	g : 0.09	b : 0.07	] : 0.07	i : 0.05	e : 0.03	2 : 0.03	f : 0.03	a : 0.01	3 : 0.01	4 : 0.01	5 : 0.01	
c : 0.14	] : 0.14	g : 0.12	d : 0.12	= : 0.09	e : 0.07	f : 0.07	2 : 0.05	i : 0.05	3 : 0.03	b : 0.01	4 : 0.01	5 : 0.01	
= : 0.14	e : 0.11	d : 0.11	i : 0.11	g : 0.09	] : 0.09	f : 0.07	3 : 0.07	2 : 0.05	c : 0.05	4 : 0.03	b : 0.03	
= : 0.14	d : 0.12	i : 0.12	f : 0.11	g : 0.07	b : 0.07	e : 0.07	3 : 0.07	c : 0.05	] : 0.05	4 : 0.03	2 : 0.01	a : 0.01	
= : 0.14	d : 0.14	f : 0.11	i : 0.11	e : 0.11	] : 0.11	g : 0.07	3 : 0.05	4 : 0.03	c : 0.03	b : 0.03	a : 0.01	
= : 0.14	f : 0.12	d : 0.12	i : 0.11	e : 0.11	g : 0.07	c : 0.07	4 : 0.03	] : 0.03	b : 0.03	a : 0.03	3 : 0.03	2 : 0.01	h : 0.01	
= : 0.14	f : 0.11	i : 0.11	2 : 0.11	e : 0.09	g : 0.09	3 : 0.09	c : 0.07	d : 0.07	b : 0.03	4 : 0.01	h : 0.01	] : 0.01	
2 : 0.16	= : 0.14	g : 0.09	f : 0.09	3 : 0.09	i : 0.09	e : 0.07	c : 0.07	d : 0.07	4 : 0.03	] : 0.03	h : 0.01	
= : 0.14	f : 0.11	3 : 0.11	g : 0.11	i : 0.09	e : 0.07	2 : 0.07	d : 0.05	c : 0.05	: : 0.03	4 : 0.03	b : 0.03	] : 0.01	h : 0.01	a : 0.01	
i : 0.11	= : 0.11	g : 0.11	b : 0.09	d : 0.09	f : 0.09	c : 0.09	e : 0.07	2 : 0.05	3 : 0.05	] : 0.05	h : 0.03	4 : 0.01	
e : 0.11	i : 0.11	d : 0.11	f : 0.11	= : 0.11	g : 0.11	c : 0.07	2 : 0.05	b : 0.05	h : 0.03	3 : 0.03	a : 0.03	] : 0.01	4 : 0.01	

#score	732.0481079828863
#seq	54
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_transcript_m3_run2.txt

#BEAR
[dddd!!bbnnnnnbbdddd]eee	chr21:33979857-33980127(-)$1	270	50	74	11.4447
gggggggbbnnnnnbb22gggggg	chr1:211449609-211449870(+)$1	261	52	76	12.4549
ffffff[bbnnnnnbb]ffffff:	chr9:91930029-91930276(+)$1	247	128	152	10.3825
$$$ffffffnnnnnffffff]ddd	chr19:8550384-8550694(+)$1	310	35	59	10.2367
eee[eeeeennnnneeeeeeeeee	chr19:14521771-14522063(-)$1	292	90	114	11.3664
"eeeee[bbnnnnnbb]eeeeeee	chr6:56954857-56955202(+)$1	345	7	31	11.7618
ddgggggggnnnnnggggggg:dd	chr9:139622232-139622503(-)$1	271	138	162	11.2547
=========nnnnn==========	chr7:104713964-104714228(+)$1	264	201	225	14.0950
c[dddd[bbnnnnnbbddddcccc	chr11:62367968-62368245(-)$1	277	156	180	11.4809
fffffa[bbnnnnnbb22a]ffff	chr6:29595187-29595442(-)$1	255	228	252	11.4407
ggggg!!bbnnnnnbb22gggggg	chr19:16940517-16940776(+)$1	259	83	107	12.7270
eee####bbnnnnnbb4444eeee	chr22:20891356-20891605(+)$1	249	68	92	11.8139
c"""ccc[annnnna]ccc333cc	chr19:14529968-14530228(-)$1	260	206	230	12.9652
========oooooo==========	chr5:53409035-53409339(-)$1	304	18	42	9.6787
iiiiiiiiinnnnniiiiiiiii]	chr16:67863589-67863898(-)$1	309	194	218	13.4147
hhhhh!!bbnnnnnbb]hhhhhhh	chr22:38889614-38889872(-)$1	258	35	59	10.4442
===========lll==========	chr1:35652742-35652953(-)$1	211	87	111	9.4605
!!dddd!!annnnna22dddd22a	chr4:142154865-142155332(+)$1	467	167	191	11.4549
ccc[eeeeennnnneeeeeccc]f	chr1:235324387-235324651(-)$1	264	65	89	11.8514
a[gggggggnnnnnggggggg]a3	chr9:139621370-139621641(-)$1	271	216	240	12.8784
eeeee[cccnnnnnccceeeeehh	chr2:153550951-153551240(-)$1	289	48	72	11.9022
dd!!bbcccnnnnnccc]bbdddd	chr19:52207468-52207774(+)$1	306	127	151	11.2068
ff[bb[cccnnnnnccc22bbfff	chr11:2966666-2966945(-)$1	279	127	151	11.4604
cca[eeeeennnnneeeee]a]cc	chr6:79770117-79770383(-)$1	266	102	126	11.8665
d[gggggggnnnnngggggggddd	chr7:157000330-157000628(+)$1	298	122	146	12.4685
f####ddddnnnnndddd]fffff	chr17:33923844-33924167(+)$1	323	175	199	11.5897
!eeeee!!annnnna22eeeeeee	chr11:65268164-65268384(+)$1	220	46	70	12.0383
eeeee[a[annnnna]aeeeee22	chr12:124086587-124086865(+)$1	278	110	134	11.8376
=========nnnnn==========	chr16:89592720-89592976(+)$1	256	204	228	14.0950
###bb[cccnnnnnccc]bbbb22	chr9:100773522-100773728(+)$1	206	136	160	11.1931
fff[eeeeennnnneeeeefffff	chr19:5707616-5707885(-)$1	269	54	78	11.3976
fffffddddnnnnndddd4444ff	chr6:31828206-31828467(-)$1	261	54	78	11.0232
ffffff!!annnnna22ffffff:	chr11:65268107-65268310(+)$1	203	103	127	10.5927
!!gggggggnnnnnggggggg22a	chrX:70757734-70758026(+)$1	292	33	57	12.7142
[ccc[ddddnnnnndddd]ccc]b	chr11:6499981-6500263(-)$1	282	108	132	11.6166
cc[ccc!!annnnna22ccc]ccc	chr1:22109203-22109513(-)$1	310	129	153	12.4475
iiiiiiiiillliiiiiiiiiccc	chr22:20077604-20077843(+)$1	239	102	126	8.2890
ddd[eeeeennnnneeeeedddd2	chr19:5711516-5711764(-)$1	248	104	128	10.8172
ddgggggggnnnnnggggggg444	chr1:52826612-52826898(-)$1	286	253	277	12.4523
c[ccc[cccnnnnncccccc]ccc	chr5:140998313-140998595(-)$1	282	79	103	12.8080
dddd!!cccnnnnnccc]dddddd	chr1:22201322-22201580(-)$1	258	149	173	11.7115
========oooooo==========	chr9:131456819-131457043(+)$1	224	91	115	9.6787
fff!!ddddnnnnndddd22ffff	chr1:27105546-27105833(+)$1	287	254	278	11.2500
=========nnnnn==========	chr16:66768006-66768311(-)$1	305	16	40	14.0950
ccc!!ddddnnnnndddd22ccc:	chr11:65293552-65293806(+)$1	254	225	249	10.6796
b$$$$$cccnnnnnccc333bb]d	chr14:23790794-23791057(+)$1	263	225	249	11.4605
fffff[cccnnnnnccc]ffffff	chr7:5013599-5013869(+)$1	270	8	32	12.1365
c[a"""cccnnnnnccc4444a]c	chr19:5661643-5661923(+)$1	280	3	27	13.0422
iiiii!!bbnnnnnbb]iiiiiii	chr11:576424-576693(+)$1	269	31	55	13.2619
f$$$$$cccnnnnnccc22fffff	chr17:48823869-48824161(+)$1	292	210	234	11.4821
hhhhhhcccnnnnnccc]hhhhhh	chr5:177659017-177659302(-)$1	285	255	279	10.6643
dd"""ddddnnnnndddd22dddd	chr9:128001125-128001367(-)$1	242	126	150	10.9422
$$$$eeeeennnnneeeeebb22e	chr4:1953731-1954052(+)$1	321	19	43	10.3870
!eeeeecccnnnnnccc]eeeee]	chr2:201724291-201724554(-)$1	263	69	93	12.3651
iiiiiii[annnnna]iiiiiiii	chr8:56686092-56686381(+)$1	289	166	190	13.5064
$$$dddd[annnnna]dddd4444	chr3:50131094-50131363(+)$1	269	195	219	11.2110

#otherMatches

#Seq PSSM
AGGCUUUGUAUUUGACAGCUCUUU	chr21:33979857-33980127(-)$1	270	50	74	11.4447
UUCACUCCCUUUCCGGAUGAGUGG	chr1:211449609-211449870(+)$1	261	52	76	12.4549
AGACUUGGUGUCCAACAGAGUCUA	chr9:91930029-91930276(+)$1	247	128	152	10.3825
CUGGCGUGUUGUGCACACGCACAC	chr19:8550384-8550694(+)$1	310	35	59	10.2367
CUUCGGUGGUCUCUCCAUCAAGAA	chr19:14521771-14522063(-)$1	292	90	114	11.3664
UAGCGGGCCAGUAAGGGCCGCUCC	chr6:56954857-56955202(+)$1	345	7	31	11.7618
GCGGUUUCCAGCCAGGAAGCUUCG	chr9:139622232-139622503(-)$1	271	138	162	11.2547
UGAGAGAAUAAACGGUUCUCUCAA	chr7:104713964-104714228(+)$1	264	201	225	14.0950
GUGGAGCAGAAUCCCUCUCCCUCC	chr11:62367968-62368245(-)$1	277	156	180	11.4809
GGGGCCAGCCAGCUGCACGCGCCC	chr6:29595187-29595442(-)$1	255	228	252	11.4407
GGUAGAAGACGCCCUCACCUAUCU	chr19:16940517-16940776(+)$1	259	83	107	12.7270
UGGUGUGGCACACAGUAAAUCCAG	chr22:20891356-20891605(+)$1	249	68	92	11.8139
AGGACGAGGGGAGACGUUGGGAUC	chr19:14529968-14530228(-)$1	260	206	230	12.9652
UCCAGUAGGAAUUACUGUUGGGAA	chr5:53409035-53409339(-)$1	304	18	42	9.6787
GCAUCUUCAGGGGAUGAGGAUGCC	chr16:67863589-67863898(-)$1	309	194	218	13.4147
AAAGUUCGAUUUUCUCCACUUUAA	chr22:38889614-38889872(-)$1	258	35	59	10.4442
UUUUUUUCUUGCAGCGGGAAAGAG	chr1:35652742-35652953(-)$1	211	87	111	9.4605
gaugaagGCAGAAAGGAUUCAGAU	chr4:142154865-142155332(+)$1	467	167	191	11.4549
UGCGAGCUGGCGCGCAGCUGCAGU	chr1:235324387-235324651(-)$1	264	65	89	11.8514
AGUGACUGGAGGGACCAGUCGGUC	chr9:139621370-139621641(-)$1	271	216	240	12.8784
UAAAGUCAUAUUAAGUGCUUUGGU	chr2:153550951-153551240(-)$1	289	48	72	11.9022
GGAUGCCGAGCUGAUCGAGCCCUG	chr19:52207468-52207774(+)$1	306	127	151	11.2068
GGCAGACCGGCUGUCGGGACUCCA	chr11:2966666-2966945(-)$1	279	127	151	11.4604
UUGUGUGGAAAGGAUCUGCUCUGG	chr6:79770117-79770383(-)$1	266	102	126	11.8665
UUGUCUCGAUGCCUUCGAGAUGCA	chr7:157000330-157000628(+)$1	298	122	146	12.4685
GCACGGUCCAGCUCGGACACAGGU	chr17:33923844-33924167(+)$1	323	175	199	11.5897
GGCCACAGGGAAAGCGAGUGGUUG	chr11:65268164-65268384(+)$1	220	46	70	12.0383
GGAGCAUGUGACAGAGGGCUCCUG	chr12:124086587-124086865(+)$1	278	110	134	11.8376
UGUAAUCUGAGAAACAGAUUGCAA	chr16:89592720-89592976(+)$1	256	204	228	14.0950
agUCAGUGAGGAGGUCAGUGCAGC	chr9:100773522-100773728(+)$1	206	136	160	11.1931
AGUGCUGCAGAUGAUGCAGGCUGG	chr19:5707616-5707885(-)$1	269	54	78	11.3976
UUCCCUUUCCCACAGAAACAGCGG	chr6:31828206-31828467(-)$1	261	54	78	11.0232
GGCCACAGGGAAAGCGAGUGGUUG	chr11:65268107-65268310(+)$1	203	103	127	10.5927
GGCAGUUGCAGGAGGCAAUUGAGC	chrX:70757734-70758026(+)$1	292	33	57	12.7142
GAGGCUCACGGACUGUGGACCUGG	chr11:6499981-6500263(-)$1	282	108	132	11.6166
GUGUCGCAGGAGCACAUCGAGACC	chr1:22109203-22109513(-)$1	310	129	153	12.4475
UAGGGGCUGAGGCAGCCCCUGGGG	chr22:20077604-20077843(+)$1	239	102	126	8.2890
UGUCUGGAACUCAAUUCUAAUGGA	chr19:5711516-5711764(-)$1	248	104	128	10.8172
GUGGGUUCUGGAGGAGGGCCCCUG	chr1:52826612-52826898(-)$1	286	253	277	12.4523
UAGGCGCGGGGUCGCCGGCCAGCG	chr5:140998313-140998595(-)$1	282	79	103	12.8080
GUGGAACAGUGCUCCUGCCCACCC	chr1:22201322-22201580(-)$1	258	149	173	11.7115
UUCUUUCAGGAGGAUGAAGGAGAA	chr9:131456819-131457043(+)$1	224	91	115	9.6787
GCUGAUCAGUAAGUUUGACAAGCU	chr1:27105546-27105833(+)$1	287	254	278	11.2500
ACUUUAUUUCUGAAGAAUGAGGUG	chr16:66768006-66768311(-)$1	305	16	40	14.0950
CCGGAGUUGGCUGACAGCAGUGGC	chr11:65293552-65293806(+)$1	254	225	249	10.6796
UGAGGACCCGGUGAgggaaggagg	chr14:23790794-23791057(+)$1	263	225	249	11.4605
UUCCUGUCGUUAGUCGGGAGGGGG	chr7:5013599-5013869(+)$1	270	8	32	12.1365
CGGGAGCGCAUGGAGCGGGAACGG	chr19:5661643-5661923(+)$1	280	3	27	13.0422
GGAAGAGGCGCCGUGCACUUCCGG	chr11:576424-576693(+)$1	269	31	55	13.2619
AUUCAGUUCAUUAAGAAACUUUUC	chr17:48823869-48824161(+)$1	292	210	234	11.4821
CACAGGCAGCACACUUGACCUGUG	chr5:177659017-177659302(-)$1	285	255	279	10.6643
CAAAUUUGAAGAGCUCAACAUGGU	chr9:128001125-128001367(-)$1	242	126	150	10.9422
GACAGAAGCAGACGGCUUCCCUUG	chr4:1953731-1954052(+)$1	321	19	43	10.3870
UAUUUCUCUCUUUUAGAUGAAAUU	chr2:201724291-201724554(-)$1	263	69	93	12.3651
UGCUCCAGGGCAUUUGUGGAGUAA	chr8:56686092-56686381(+)$1	289	166	190	13.5064
CACCAUCACAGAGAGCGAUGUAAG	chr3:50131094-50131363(+)$1	269	195	219	11.2110

#DB
.((((..((.....)))))).)))	chr21:33979857-33980127(-)$1	1	50	74	11.4447
(((((((((.....))..))))))	chr1:211449609-211449870(+)$1	1	52	76	12.4549
((((((.((.....)).)))))).	chr9:91930029-91930276(+)$1	1	128	152	10.3825
...((((((.....)))))).)))	chr19:8550384-8550694(+)$1	1	35	59	10.2367
(((.(((((.....))))))))))	chr19:14521771-14522063(-)$1	1	90	114	11.3664
.(((((.((.....)).)))))))	chr6:56954857-56955202(+)$1	1	7	31	11.7618
))(((((((.....))))))).((	chr9:139622232-139622503(-)$1	1	138	162	11.2547
(((((((((.....))))))))))	chr7:104713964-104714228(+)$1	1	201	225	14.0950
(.((((.((.....))))))))))	chr11:62367968-62368245(-)$1	1	156	180	11.4809
((((((.((.....))..).))))	chr6:29595187-29595442(-)$1	1	228	252	11.4407
(((((..((.....))..))))))	chr19:16940517-16940776(+)$1	1	83	107	12.7270
(((....((.....))....))))	chr22:20891356-20891605(+)$1	1	68	92	11.8139
(...(((.(.....).)))...))	chr19:14529968-14530228(-)$1	1	206	230	12.9652
((((((((......))))))))))	chr5:53409035-53409339(-)$1	1	18	42	9.6787
(((((((((.....))))))))).	chr16:67863589-67863898(-)$1	1	194	218	13.4147
(((((..((.....)).)))))))	chr22:38889614-38889872(-)$1	1	35	59	10.4442
(((((((((((...))))))))))	chr1:35652742-35652953(-)$1	1	87	111	9.4605
..((((..(.....)..))))..)	chr4:142154865-142155332(+)$1	1	167	191	11.4549
(((.(((((.....)))))))).)	chr1:235324387-235324651(-)$1	1	65	89	11.8514
(.(((((((.....))))))).).	chr9:139621370-139621641(-)$1	1	216	240	12.8784
(((((.(((.....))))))))))	chr2:153550951-153551240(-)$1	1	48	72	11.9022
((..(((((.....))).))))))	chr19:52207468-52207774(+)$1	1	127	151	11.2068
((.((.(((.....)))..)))))	chr11:2966666-2966945(-)$1	1	127	151	11.4604
(((.(((((.....))))).).))	chr6:79770117-79770383(-)$1	1	102	126	11.8665
(.(((((((.....))))))))))	chr7:157000330-157000628(+)$1	1	122	146	12.4685
(....((((.....)))).)))))	chr17:33923844-33924167(+)$1	1	175	199	11.5897
.(((((..(.....)..)))))))	chr11:65268164-65268384(+)$1	1	46	70	12.0383
(((((.(.(.....).))))))..	chr12:124086587-124086865(+)$1	1	110	134	11.8376
(((((((((.....))))))))))	chr16:89592720-89592976(+)$1	1	204	228	14.0950
...((.(((.....))).))))..	chr9:100773522-100773728(+)$1	1	136	160	11.1931
(((.(((((.....))))))))))	chr19:5707616-5707885(-)$1	1	54	78	11.3976
(((((((((.....))))....))	chr6:31828206-31828467(-)$1	1	54	78	11.0232
((((((..(.....)..)))))).	chr11:65268107-65268310(+)$1	1	103	127	10.5927
..(((((((.....)))))))..)	chrX:70757734-70758026(+)$1	1	33	57	12.7142
.(((.((((.....)))).))).)	chr11:6499981-6500263(-)$1	1	108	132	11.6166
((.(((..(.....)..))).)))	chr1:22109203-22109513(-)$1	1	129	153	12.4475
(((((((((...)))))))))(((	chr22:20077604-20077843(+)$1	1	102	126	8.2890
(((.(((((.....))))))))).	chr19:5711516-5711764(-)$1	1	104	128	10.8172
(((((((((.....)))))))...	chr1:52826612-52826898(-)$1	1	253	277	12.4523
(.(((.(((.....)))))).)))	chr5:140998313-140998595(-)$1	1	79	103	12.8080
((((..(((.....))).))))))	chr1:22201322-22201580(-)$1	1	149	173	11.7115
((((((((......))))))))))	chr9:131456819-131457043(+)$1	1	91	115	9.6787
(((..((((.....))))..))))	chr1:27105546-27105833(+)$1	1	254	278	11.2500
(((((((((.....))))))))))	chr16:66768006-66768311(-)$1	1	16	40	14.0950
(((..((((.....))))..))).	chr11:65293552-65293806(+)$1	1	225	249	10.6796
(.....(((.....)))...)).)	chr14:23790794-23791057(+)$1	1	225	249	11.4605
(((((.(((.....))).))))))	chr7:5013599-5013869(+)$1	1	8	32	12.1365
(.(...(((.....)))....).)	chr19:5661643-5661923(+)$1	1	3	27	13.0422
(((((..((.....)).)))))))	chr11:576424-576693(+)$1	1	31	55	13.2619
(.....(((.....)))..)))))	chr17:48823869-48824161(+)$1	1	210	234	11.4821
(((((((((.....))).))))))	chr5:177659017-177659302(-)$1	1	255	279	10.6643
((...((((.....))))..))))	chr9:128001125-128001367(-)$1	1	126	150	10.9422
....(((((.....)))))))..)	chr4:1953731-1954052(+)$1	1	19	43	10.3870
.((((((((.....))).))))).	chr2:201724291-201724554(-)$1	1	69	93	12.3651
(((((((.(.....).))))))))	chr8:56686092-56686381(+)$1	1	166	190	13.5064
...((((.(.....).))))....	chr3:50131094-50131363(+)$1	1	195	219	11.2110

#PSSM
f : 0.17	c : 0.14	d : 0.12	= : 0.10	e : 0.07	i : 0.07	! : 0.07	$ : 0.05	[ : 0.03	g : 0.03	h : 0.03	" : 0.01	a : 0.01	# : 0.01	b : 0.01	
f : 0.14	d : 0.12	e : 0.12	= : 0.10	$ : 0.08	[ : 0.08	c : 0.08	i : 0.07	g : 0.03	h : 0.03	! : 0.03	# : 0.03	" : 0.01	
g : 0.12	f : 0.12	e : 0.12	= : 0.10	d : 0.08	$ : 0.08	i : 0.07	c : 0.07	" : 0.03	h : 0.03	[ : 0.03	a : 0.03	# : 0.03	! : 0.01	
g : 0.12	f : 0.10	= : 0.10	d : 0.08	[ : 0.08	e : 0.08	i : 0.07	" : 0.05	! : 0.05	c : 0.05	$ : 0.05	# : 0.03	h : 0.03	b : 0.03	
e : 0.19	g : 0.12	f : 0.10	= : 0.10	d : 0.07	i : 0.07	c : 0.05	b : 0.05	! : 0.05	# : 0.03	h : 0.03	$ : 0.03	" : 0.03	[ : 0.01	
e : 0.16	d : 0.16	g : 0.10	= : 0.10	[ : 0.10	! : 0.08	f : 0.05	i : 0.05	c : 0.03	$ : 0.03	a : 0.01	# : 0.01	b : 0.01	" : 0.01	h : 0.01	
c : 0.23	! : 0.14	d : 0.12	g : 0.10	e : 0.10	= : 0.10	[ : 0.07	i : 0.05	f : 0.01	# : 0.01	a : 0.01	
c : 0.21	b : 0.17	e : 0.10	= : 0.10	d : 0.10	g : 0.08	[ : 0.07	! : 0.07	i : 0.03	f : 0.01	
c : 0.21	b : 0.17	a : 0.14	e : 0.10	d : 0.10	g : 0.08	= : 0.07	o : 0.03	i : 0.03	f : 0.01	
n : 0.92	o : 0.03	= : 0.01	l : 0.01	
n : 0.92	o : 0.03	= : 0.01	l : 0.01	
n : 0.92	o : 0.03	l : 0.03	
n : 0.92	o : 0.03	l : 0.01	i : 0.01	
n : 0.92	o : 0.03	l : 0.01	i : 0.01	
c : 0.21	b : 0.17	a : 0.14	e : 0.10	= : 0.10	d : 0.10	g : 0.08	i : 0.03	f : 0.01	
c : 0.21	b : 0.17	e : 0.10	= : 0.10	d : 0.10	g : 0.08	] : 0.07	2 : 0.07	i : 0.03	f : 0.01	
c : 0.23	d : 0.16	2 : 0.12	e : 0.10	= : 0.10	g : 0.08	] : 0.07	i : 0.05	f : 0.01	4 : 0.01	a : 0.01	
d : 0.17	e : 0.17	= : 0.10	] : 0.10	2 : 0.08	g : 0.08	i : 0.07	f : 0.05	c : 0.05	4 : 0.03	h : 0.01	3 : 0.01	
e : 0.19	g : 0.12	= : 0.10	d : 0.08	2 : 0.08	f : 0.07	i : 0.07	4 : 0.05	c : 0.05	h : 0.03	b : 0.03	] : 0.03	a : 0.01	3 : 0.01	
g : 0.12	f : 0.12	d : 0.10	e : 0.10	= : 0.10	i : 0.07	c : 0.07	b : 0.07	4 : 0.05	2 : 0.05	] : 0.03	3 : 0.03	h : 0.03	
f : 0.14	g : 0.12	e : 0.12	= : 0.10	d : 0.08	] : 0.07	c : 0.07	i : 0.07	b : 0.07	4 : 0.05	h : 0.03	3 : 0.01	a : 0.01	
f : 0.16	e : 0.14	c : 0.12	d : 0.10	= : 0.10	i : 0.05	2 : 0.05	4 : 0.05	g : 0.03	h : 0.03	] : 0.03	b : 0.03	: : 0.01	3 : 0.01	a : 0.01	
f : 0.17	d : 0.12	c : 0.12	e : 0.10	= : 0.10	2 : 0.08	] : 0.07	i : 0.05	h : 0.05	g : 0.03	4 : 0.03	a : 0.01	
f : 0.16	d : 0.12	c : 0.12	e : 0.10	= : 0.10	: : 0.05	h : 0.05	2 : 0.05	g : 0.03	] : 0.03	a : 0.03	4 : 0.03	i : 0.03	3 : 0.01	b : 0.01	

#score	654.3005021615558
#seq	56
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_CDS_m1_run1.txt

#BEAR
ccc!!gggggggssssssssssggggggg	chr16:56973980-56974238(+)$1	258	222	251	11.6016
=bb^^^^^^^^^^^^^^^^^^^bb]====	chr2:85823689-85824000(+)$1	311	120	149	16.7115
dd[ccceeeeerrrrrrrrreeeee333c	chr9:95013915-95014201(-)$1	286	81	110	11.8241
"hhhhhhhhvvvvvvvvvvvvvhhhhhhh	chr10:101563802-101564104(+)$1	302	161	190	13.4127
g$$$$$eeeeesssssssssseeeeeggg	chr14:24769846-24770154(+)$1	308	93	122	12.8051
eeee^^^^^^^^^^^^^^^^^^eeeee::	chr4:155533582-155533791(-)$1	209	161	190	15.3563
""ddddxxxxxxxxxxxxxxxdddd333d	chr8:101717138-101717361(-)$1	223	81	110	15.9517
c$$$$$eeeeerrrrrrrrreeeee>>>>	chr14:23239357-23239615(+)$1	258	67	96	11.0824
eeee[dddduuuuuuuuuuuudddd]eee	chr2:170668193-170668461(+)$1	268	80	109	16.9834
cc####ffffff^^^^^^^^^^^^^^^^^	chr5:42807000-42807249(-)$1	249	164	193	14.2791
Cdddd[ddddtttttttttttdddd]ddd	chr4:166418658-166418903(+)$1	245	84	113	13.6754
[ccc!!cccrrrrrrrrrccc22ccc333	chr17:42398618-42398889(-)$1	271	153	182	11.3051
ff$$$$$cccsssssssssscccffffff	chr12:53860997-53861244(+)$1	247	196	225	12.1017
:bb[eeeee^^^^^^^^^^^^^^^^^^^^	chr19:13054581-13054827(+)$1	246	84	113	15.3196
ee^^^^^^^^^^^^^^^^^^eeeee333f	chr4:155533456-155533688(-)$1	232	60	89	17.0881
eeeffffffvvvvvvvvvvvvvfffffff	chr4:74321319-74321546(+)$1	227	149	178	16.4098
ffffgggggggssssssssssggggggg:	chr17:39846346-39846612(+)$1	266	206	235	10.2894
ff####dddd!!aooooooa22dddd444	chr6:28872170-28872417(-)$1	247	63	92	7.7276
[bb[eeeeeyyyyyyyyyyyyyyyyeeee	chr2:198284951-198285222(-)$1	271	210	239	15.8494
cc[ffffffuuuuuuuuuuuuffffff33	chr18:33744406-33744677(+)$1	271	183	212	16.8789
cc$$$$$ddddssssssssssdddd6666	chr4:74301916-74302147(+)$1	231	79	108	11.6078
hhh^^^^^^^^^^^^^^^^^^^hhhhhhh	chr9:86584165-86584402(-)$1	237	23	52	14.9785
ffffffffffuuuuuuuuuuuuffffff:	chr9:19126204-19126479(-)$1	275	111	140	14.9391
eee!!dddd^^^^^^^^^^^^^^^^^^^d	chr11:17153282-17153580(-)$1	298	176	205	16.4652
dd!!dddd[ddddrrrrrrrrrdddd]dd	chr1:33252379-33252660(-)$1	281	231	260	9.3585
[bb"""cccvvvvvvvvvvvvvccc333b	chr10:121336467-121336718(-)$1	251	34	63	19.2333
eee[eeeeeuuuuuuuuuuuueeeee]ee	chr17:62496623-62496872(-)$1	249	92	121	17.6716
"hhhhhhhhvvvvvvvvvvvvvhhhhhhh	chrX:48673629-48673897(+)$1	268	156	185	13.4127
[a^^^^^^^^^^^^^^^^^^^^^^^^^^a	chr15:85213072-85213393(-)$1	321	42	71	17.9296
^^^^^^^^^^^^^^^^^^^^^^ccc]fff	chr4:74301910-74302116(+)$1	206	51	80	17.2662
b!!ggggggguuuuuuuuuuuuggggggg	chr4:78739996-78740349(-)$1	353	276	305	16.8051
dd####cccooooooccc4444dddd22d	chr12:69746922-69747141(+)$1	219	168	197	8.2536
#ccc!!eeeeerrrrrrrrreeeee22cc	chr2:86360303-86360600(+)$1	297	128	157	11.8318
d:dddd!!ddddrrrrrrrrrdddd22dd	chr22:24439210-24439471(+)$1	261	229	258	8.9293
bb!!ffffffssssssssssffffff22b	chr12:12976134-12976430(+)$1	296	252	281	11.7013
[eeeeeyyyyyyyyyyyyyyyyeeeee22	chr6:24291049-24291291(-)$1	242	57	86	16.3978
ddddeeeeevvvvvvvvvvvvveeeee:F	chr2:58389959-58390236(-)$1	277	122	151	16.0838
dddffffffvvvvvvvvvvvvvffffff2	chr4:107168340-107168629(-)$1	289	88	117	16.2461
ee^^^^^^^^^^^^^^^^^^eeeee333f	chr4:155533591-155533812(-)$1	221	184	213	17.0881
h^^^^^^^^^^^^^^^^^^^^^^^^^^^h	chr6:142630669-142630952(+)$1	283	214	243	17.2307
!dddd[cccrrrrrrrrrcccdddddddd	chr17:36871915-36872218(+)$1	303	86	115	9.5576
ddddeeeeettttttttttteeeee333d	chr2:242276811-242277092(+)$1	281	154	183	15.8510
fff^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:128582142-128582400(-)$1	258	122	151	17.1767
:eeeee[ddddssssssssssdddd]eee	chr4:110661921-110662157(-)$1	236	39	68	10.9467
[bb[eeeeerrrrrrrrreeeeebb]ggg	chr3:42660488-42660764(+)$1	276	86	115	9.8457
^^^^^^^^^^^^^^^^^^^^^^ccc22ii	chr14:73566372-73566623(+)$1	251	117	146	17.6481
:bb!!dddduuuuuuuuuuuudddd22bb	chr11:70265873-70266133(+)$1	260	209	238	16.4465
^^^^^^^^^^^^^^^^^^^^^^iiiiiii	chr3:50098915-50099160(+)$1	245	101	130	17.1776
hh!!ffffffssssssssssffffff22h	chr4:74286708-74286911(+)$1	203	131	160	11.5888
ee^^^^^^^^^^^^^^^^^^^^^^eeeee	chr19:13054527-13054781(+)$1	254	145	174	17.3490
ii####dddd^^^^^^^^^^^^^^^^^^^	chr17:37009252-37009459(-)$1	207	53	82	16.3776
eee"""ffffffssssssssssffffff8	chr15:44085987-44086282(+)$1	295	223	252	11.3140
iiiii[cccxxxxxxxxxxxxxxxcccii	chr10:70516163-70516430(+)$1	267	69	98	15.8463

#otherMatches

#Seq PSSM
ACACUAAGCAGAuuuugcucuuuuuguuu	chr16:56973980-56974238(+)$1	258	222	251	11.6016
CCACCCCUUCCCCAAGCCAGACUGUGGUC	chr2:85823689-85824000(+)$1	311	120	149	16.7115
UAGUGUUCUGCUUUCUCUUUGCAGACUUA	chr9:95013915-95014201(-)$1	286	81	110	11.8241
UGUUGGGGUGAUGGUGCUUGUAAUCCCAA	chr10:101563802-101564104(+)$1	302	161	190	13.4127
GAUGAUUUUCUUGUCUACUGUGGAGACAC	chr14:24769846-24770154(+)$1	308	93	122	12.8051
CAGAUAAUAAACUAGUGAAAUUUCUGUAU	chr4:155533582-155533791(-)$1	209	161	190	15.3563
ACGGCUGUUUCCUCUUAUUCAAGCCAUGC	chr8:101717138-101717361(-)$1	223	81	110	15.9517
GCACUUUACCAGAAAAAACAUGGUAUUAA	chr14:23239357-23239615(+)$1	258	67	96	11.0824
AACCAAUUUUUUAUUCAUUUUAAAUAGGU	chr2:170668193-170668461(+)$1	268	80	109	16.9834
AUAUUCCUGUUUAUCAACAAGAAGAAAAC	chr5:42807000-42807249(-)$1	249	164	193	14.2791
CAGAAACUUUAAAUUUUUAAAAAGGCUUC	chr4:166418658-166418903(+)$1	245	84	113	13.6754
AGCUCCCAGCCCCAACCUCUGCCAGCCUA	chr17:42398618-42398889(-)$1	271	153	182	11.3051
UAAACUUGCCUGUCUACUAUGGCUAAGCC	chr12:53860997-53861244(+)$1	247	196	225	12.1017
aggaggacaaggaggaagaugaggaggaa	chr19:13054581-13054827(+)$1	246	84	113	15.3196
GAUAAUAAACUAGUGAAAUUUCUGUAUUU	chr4:155533456-155533688(-)$1	232	60	89	17.0881
ACAGAAAUAAAAUAUCUCCAAAUGUUUCC	chr4:74321319-74321546(+)$1	227	149	178	16.4098
CAGUUGGGUUUUAAAGUACAUAGACUUAU	chr17:39846346-39846612(+)$1	266	206	235	10.2894
GGACCUGCCUGACAACCCCGAGAGGUUCA	chr6:28872170-28872417(-)$1	247	63	92	7.7276
UGGUUGAAGUCACAGAUGCCAUAUUCUUC	chr2:198284951-198285222(-)$1	271	210	239	15.8494
GUCAUUGUGGAAAAAGCAGGAUACAAUCU	chr18:33744406-33744677(+)$1	271	183	212	16.8789
CAAUUUUUUUAAUUUUCCUACUAAAUUUU	chr4:74301916-74302147(+)$1	231	79	108	11.6078
ACUUUUUUUUCUUUUCUUUUAUAGUGUGA	chr9:86584165-86584402(-)$1	237	23	52	14.9785
ACUUUCUCUCCUUUUGUGUUUUGAGAGAU	chr9:19126204-19126479(-)$1	275	111	140	14.9391
AUGUAUGCAUCCUAGCUUUAAUUUUUAUU	chr11:17153282-17153580(-)$1	298	176	205	16.4652
UCUCUGCUCUGAUUUCUUAUAUAUUAAAG	chr1:33252379-33252660(-)$1	281	231	260	9.3585
AUUGUUUCGGUGAACGGUACUACGAUUGA	chr10:121336467-121336718(-)$1	251	34	63	19.2333
CUUUCUUUACACCUAAUAACAUAAAGCAA	chr17:62496623-62496872(-)$1	249	92	121	17.6716
CCCAGGGUGGCUACAACCUCCGCGCCCUG	chrX:48673629-48673897(+)$1	268	156	185	13.4127
UCUGAACUUUUCAACGCUUCUCUGACUUG	chr15:85213072-85213393(-)$1	321	42	71	17.9296
ACAAAAUAACUAGCAACCAUGAAGUGGGU	chr4:74301910-74302116(+)$1	206	51	80	17.2662
GCGCGGCAGCGGGGCUGGGAGAGCUGCUG	chr4:78739996-78740349(-)$1	353	276	305	16.8051
UCAAACAAAUAAUAUUUUUACAGAAGCAG	chr12:69746922-69747141(+)$1	219	168	197	8.2536
CAGAUUAAUGCUUUAAAAAUGUGUUUCUC	chr2:86360303-86360600(+)$1	297	128	157	11.8318
CCCCCUGGCUCGCCAUGCUUUUGAGGAAG	chr22:24439210-24439471(+)$1	261	229	258	8.9293
UCGUGCUUAUAUUAUCACCGAUAAGCCAG	chr12:12976134-12976430(+)$1	296	252	281	11.7013
UGGCAGAGAUAAGUUUAAGAAACUGCCUU	chr6:24291049-24291291(-)$1	242	57	86	16.3978
UCACAGCAUAAUUUUUUUCCCCAUGCUUU	chr2:58389959-58390236(-)$1	277	122	151	16.0838
UAUUUAAGACUUUUAUCCAUUCUCUUGAA	chr4:107168340-107168629(-)$1	289	88	117	16.2461
GAUAAUAAACUAGUGAAAUUUCUGUAUUU	chr4:155533591-155533812(-)$1	221	184	213	17.0881
UUUUUUUUUUUCCUGUUUCUAUCCUUAUA	chr6:142630669-142630952(+)$1	283	214	243	17.2307
AGGUGUGAGCAGUUUUAccuccgccuccu	chr17:36871915-36872218(+)$1	303	86	115	9.5576
UACAUGGGUUUGUAAGUUUUACCCAAACU	chr2:242276811-242277092(+)$1	281	154	183	15.8510
GUAGAUCCCAUUUUUUUACAUAAUUAAAA	chrX:128582142-128582400(-)$1	258	122	151	17.1767
AGUGGCCAAUUAUUUUGACUGGAUUAGCU	chr4:110661921-110662157(-)$1	236	39	68	10.9467
GUGUGGUUAAAAACUUUAUGAUUCAGGGU	chr3:42660488-42660764(+)$1	276	86	115	9.8457
UCUAGACUUUUUACAGAAUCCAAAGCAAA	chr14:73566372-73566623(+)$1	251	117	146	17.6481
UGAAAUGCCCAACUUGAAAACGGCACAUC	chr11:70265873-70266133(+)$1	260	209	238	16.4465
uACCUCUGUCAAUGAUUCUUUUGAGAAAA	chr3:50098915-50099160(+)$1	245	101	130	17.1776
GAUCAAAAGCUUAUUCAUCUGUUUUUCUU	chr4:74286708-74286911(+)$1	203	131	160	11.5888
caaggaggaagaugaggaggaagaugUCC	chr19:13054527-13054781(+)$1	254	145	174	17.3490
CUAGAUUGUGAUCUCUUUAUCCUGUUUCC	chr17:37009252-37009459(-)$1	207	53	82	16.3776
UCACCCCAAAGUAUUAAAAGUAGCUUUGU	chr15:44085987-44086282(+)$1	295	223	252	11.3140
GAGAACAGGCACUGAACGCUAAUCCCUUU	chr10:70516163-70516430(+)$1	267	69	98	15.8463

#DB
(((..(((((((..........)))))))	chr16:56973980-56974238(+)$1	1	222	251	11.6016
(((...................)).))))	chr2:85823689-85824000(+)$1	1	120	149	16.7115
((.((((((((.........)))))...)	chr9:95013915-95014201(-)$1	1	81	110	11.8241
.((((((((.............)))))))	chr10:101563802-101564104(+)$1	1	161	190	13.4127
(.....(((((..........))))))))	chr14:24769846-24770154(+)$1	1	93	122	12.8051
((((..................)))))..	chr4:155533582-155533791(-)$1	1	161	190	15.3563
..((((...............))))...)	chr8:101717138-101717361(-)$1	1	81	110	15.9517
(.....(((((.........)))))....	chr14:23239357-23239615(+)$1	1	67	96	11.0824
((((.((((............)))).)))	chr2:170668193-170668461(+)$1	1	80	109	16.9834
((....((((((.................	chr5:42807000-42807249(-)$1	1	164	193	14.2791
(((((.((((...........)))).)))	chr4:166418658-166418903(+)$1	1	84	113	13.6754
.(((..(((.........)))..)))...	chr17:42398618-42398889(-)$1	1	153	182	11.3051
((.....(((..........)))))))))	chr12:53860997-53861244(+)$1	1	196	225	12.1017
.((.(((((....................	chr19:13054581-13054827(+)$1	1	84	113	15.3196
((..................)))))...)	chr4:155533456-155533688(-)$1	1	60	89	17.0881
)))((((((.............))))))(	chr4:74321319-74321546(+)$1	1	149	178	16.4098
))))(((((((..........))))))).	chr17:39846346-39846612(+)$1	1	206	235	10.2894
((....((((..(......)..))))...	chr6:28872170-28872417(-)$1	1	63	92	7.7276
.((.(((((................))))	chr2:198284951-198285222(-)$1	1	210	239	15.8494
((.((((((............))))))..	chr18:33744406-33744677(+)$1	1	183	212	16.8789
((.....((((..........))))....	chr4:74301916-74302147(+)$1	1	79	108	11.6078
(((...................)))))))	chr9:86584165-86584402(-)$1	1	23	52	14.9785
))))((((((............)))))).	chr9:19126204-19126479(-)$1	1	111	140	14.9391
(((..((((...................)	chr11:17153282-17153580(-)$1	1	176	205	16.4652
((..((((.((((.........)))).))	chr1:33252379-33252660(-)$1	1	231	260	9.3585
.((...(((.............)))...)	chr10:121336467-121336718(-)$1	1	34	63	19.2333
(((.(((((............))))).))	chr17:62496623-62496872(-)$1	1	92	121	17.6716
.((((((((.............)))))))	chrX:48673629-48673897(+)$1	1	156	185	13.4127
.(..........................)	chr15:85213072-85213393(-)$1	1	42	71	17.9296
......................))).)))	chr4:74301910-74302116(+)$1	1	51	80	17.2662
(..(((((((............)))))))	chr4:78739996-78740349(-)$1	1	276	305	16.8051
((....(((......)))....))))..)	chr12:69746922-69747141(+)$1	1	168	197	8.2536
.(((..(((((.........)))))..))	chr2:86360303-86360600(+)$1	1	128	157	11.8318
).((((..((((.........))))..))	chr22:24439210-24439471(+)$1	1	229	258	8.9293
((..((((((..........))))))..)	chr12:12976134-12976430(+)$1	1	252	281	11.7013
.(((((................)))))..	chr6:24291049-24291291(-)$1	1	57	86	16.3978
))))(((((.............))))).)	chr2:58389959-58390236(-)$1	1	122	151	16.0838
(((((((((.............)))))).	chr4:107168340-107168629(-)$1	1	88	117	16.2461
((..................)))))...)	chr4:155533591-155533812(-)$1	1	184	213	17.0881
(...........................)	chr6:142630669-142630952(+)$1	1	214	243	17.2307
.((((.(((.........)))))))))))	chr17:36871915-36872218(+)$1	1	86	115	9.5576
(((((((((...........)))))...)	chr2:242276811-242277092(+)$1	1	154	183	15.8510
(((..........................	chrX:128582142-128582400(-)$1	1	122	151	17.1767
.(((((.((((..........)))).)))	chr4:110661921-110662157(-)$1	1	39	68	10.9467
.((.(((((.........))))))).)))	chr3:42660488-42660764(+)$1	1	86	115	9.8457
......................)))..))	chr14:73566372-73566623(+)$1	1	117	146	17.6481
.((..((((............))))..))	chr11:70265873-70266133(+)$1	1	209	238	16.4465
......................)))))))	chr3:50098915-50099160(+)$1	1	101	130	17.1776
((..((((((..........))))))..)	chr4:74286708-74286911(+)$1	1	131	160	11.5888
((......................)))))	chr19:13054527-13054781(+)$1	1	145	174	17.3490
((....((((...................	chr17:37009252-37009459(-)$1	1	53	82	16.3776
(((...((((((..........)))))).	chr15:44085987-44086282(+)$1	1	223	252	11.3140
(((((.(((...............)))))	chr10:70516163-70516430(+)$1	1	69	98	15.8463

#PSSM
e : 0.16	d : 0.13	[ : 0.11	c : 0.09	f : 0.09	" : 0.05	: : 0.05	h : 0.05	^ : 0.05	b : 0.03	i : 0.03	= : 0.01	g : 0.01	C : 0.01	# : 0.01	! : 0.01	
e : 0.20	d : 0.15	b : 0.13	c : 0.11	f : 0.09	h : 0.07	^ : 0.07	$ : 0.03	i : 0.03	" : 0.01	a : 0.01	! : 0.01	: : 0.01	
e : 0.15	^ : 0.15	d : 0.13	b : 0.11	$ : 0.07	# : 0.07	! : 0.07	c : 0.05	h : 0.05	f : 0.05	[ : 0.03	i : 0.01	
^ : 0.20	! : 0.11	d : 0.11	f : 0.09	$ : 0.07	e : 0.07	# : 0.07	[ : 0.07	c : 0.05	h : 0.03	" : 0.03	g : 0.01	i : 0.01	
^ : 0.22	e : 0.15	f : 0.11	! : 0.09	d : 0.09	$ : 0.07	# : 0.07	h : 0.03	g : 0.03	" : 0.03	c : 0.01	[ : 0.01	i : 0.01	
^ : 0.22	e : 0.15	d : 0.11	f : 0.11	$ : 0.07	# : 0.07	g : 0.05	[ : 0.05	h : 0.03	! : 0.03	" : 0.03	c : 0.01	
^ : 0.22	e : 0.18	f : 0.15	d : 0.13	c : 0.09	g : 0.05	h : 0.03	$ : 0.03	x : 0.01	! : 0.01	y : 0.01	[ : 0.01	
^ : 0.22	e : 0.18	d : 0.16	f : 0.15	c : 0.11	g : 0.05	h : 0.03	x : 0.01	! : 0.01	y : 0.01	
^ : 0.22	e : 0.18	d : 0.16	f : 0.15	c : 0.11	g : 0.05	h : 0.03	x : 0.01	[ : 0.01	y : 0.01	
^ : 0.26	d : 0.13	v : 0.11	f : 0.09	e : 0.07	u : 0.07	g : 0.05	r : 0.05	x : 0.03	y : 0.03	c : 0.01	o : 0.01	t : 0.01	
^ : 0.28	v : 0.11	u : 0.11	e : 0.07	d : 0.07	r : 0.05	s : 0.05	g : 0.03	x : 0.03	f : 0.03	t : 0.03	y : 0.03	! : 0.01	o : 0.01	
^ : 0.28	s : 0.13	r : 0.11	v : 0.11	u : 0.11	x : 0.03	f : 0.03	t : 0.03	y : 0.03	d : 0.03	g : 0.01	! : 0.01	o : 0.01	
^ : 0.30	s : 0.16	r : 0.13	v : 0.11	u : 0.11	x : 0.03	t : 0.03	y : 0.03	a : 0.01	d : 0.01	o : 0.01	
^ : 0.30	s : 0.16	r : 0.15	v : 0.11	u : 0.11	x : 0.03	t : 0.03	o : 0.03	y : 0.03	
^ : 0.30	s : 0.16	r : 0.15	v : 0.11	u : 0.11	x : 0.03	t : 0.03	o : 0.03	y : 0.03	
^ : 0.30	s : 0.16	r : 0.15	v : 0.11	u : 0.11	x : 0.03	t : 0.03	y : 0.03	o : 0.01	c : 0.01	
^ : 0.30	s : 0.16	r : 0.15	v : 0.11	u : 0.11	x : 0.03	t : 0.03	y : 0.03	o : 0.01	c : 0.01	
^ : 0.30	s : 0.16	r : 0.15	v : 0.11	u : 0.11	x : 0.03	t : 0.03	y : 0.03	o : 0.01	c : 0.01	
^ : 0.30	s : 0.16	v : 0.11	u : 0.11	r : 0.09	x : 0.03	t : 0.03	c : 0.03	y : 0.03	o : 0.01	4 : 0.01	e : 0.01	
^ : 0.30	s : 0.16	v : 0.11	u : 0.11	r : 0.09	x : 0.03	t : 0.03	c : 0.03	y : 0.03	a : 0.01	4 : 0.01	e : 0.01	
^ : 0.26	e : 0.13	s : 0.11	v : 0.11	u : 0.11	c : 0.05	x : 0.03	y : 0.03	r : 0.03	f : 0.03	t : 0.01	2 : 0.01	4 : 0.01	
^ : 0.26	e : 0.16	d : 0.15	v : 0.11	f : 0.05	s : 0.03	2 : 0.03	y : 0.03	u : 0.03	c : 0.01	g : 0.01	r : 0.01	4 : 0.01	x : 0.01	
e : 0.22	d : 0.20	^ : 0.15	f : 0.13	c : 0.07	g : 0.05	h : 0.05	b : 0.01	2 : 0.01	y : 0.01	i : 0.01	x : 0.01	
e : 0.20	d : 0.20	^ : 0.15	f : 0.15	c : 0.07	g : 0.05	h : 0.05	b : 0.03	y : 0.01	i : 0.01	x : 0.01	
e : 0.22	d : 0.20	f : 0.15	^ : 0.13	c : 0.09	g : 0.05	h : 0.05	] : 0.01	y : 0.01	b : 0.01	i : 0.01	
f : 0.15	e : 0.13	^ : 0.13	3 : 0.11	] : 0.09	d : 0.07	2 : 0.07	g : 0.05	h : 0.05	c : 0.03	= : 0.01	> : 0.01	6 : 0.01	i : 0.01	
3 : 0.13	e : 0.13	^ : 0.13	f : 0.13	2 : 0.13	g : 0.09	h : 0.05	d : 0.03	] : 0.03	= : 0.01	> : 0.01	4 : 0.01	6 : 0.01	i : 0.01	c : 0.01	
3 : 0.15	^ : 0.13	f : 0.11	g : 0.09	e : 0.09	d : 0.07	2 : 0.07	h : 0.05	i : 0.05	: : 0.03	= : 0.01	> : 0.01	4 : 0.01	6 : 0.01	c : 0.01	b : 0.01	
d : 0.15	h : 0.09	e : 0.09	f : 0.09	g : 0.07	^ : 0.07	: : 0.05	b : 0.05	i : 0.05	c : 0.03	3 : 0.03	2 : 0.03	= : 0.01	> : 0.01	4 : 0.01	6 : 0.01	a : 0.01	F : 0.01	8 : 0.01	

#score	757.2113080639114
#seq	53
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_UTR_m2_run2.txt

#BEAR
ddddnnnnndddd]	chr20:33933154-33933407(-)$1	253	212	226	10.3421
ddddnnnnndddd:	chr19:48984694-48984931(+)$1	237	2	16	9.6088
eeeennnnneeeee	chr17:30705761-30706005(+)$1	244	2	16	9.4749
dddooooooddddc	chr19:54972099-54972331(+)$1	232	119	133	7.8131
ddddnnnnndddd3	chr4:38945625-38945853(+)$1	228	206	220	10.3265
eeeennnnneeeee	chr6:31725362-31725621(+)$1	259	98	112	9.4749
eeeennnnneeeee	chr5:42801524-42801787(-)$1	263	5	19	9.4749
eeeeooooooeeee	chr19:37035966-37036222(-)$1	256	32	46	7.0954
ddddnnnnndddd:	chr14:75598950-75599205(-)$1	255	239	253	9.6088
eeeeooooooeeee	chr13:20247146-20247355(+)$1	209	13	27	7.0954
cc[annnnna]ccc	chr2:3520138-3520348(-)$1	210	31	45	7.8744
dddoooooodddd]	chr6:149980424-149980699(-)$1	275	50	64	7.9423
dddoooooodddd:	chr15:25219680-25219956(+)$1	276	50	64	7.2090
eeeennnnneeeee	chr14:21732133-21732349(-)$1	216	87	101	9.4749
!cccnnnnncccdd	chr19:5909419-5909658(+)$1	239	193	207	8.3829
eeeeooooooeeee	chr1:146630041-146630280(-)$1	239	207	221	7.0954
fcccnnnnnccc]f	chr16:23477142-23477368(-)$1	226	124	138	7.8838
acccnnnnnccc]a	chr4:175239118-175239364(+)$1	246	55	69	8.0881
eeeennnnneeeee	chr3:42661594-42661848(+)$1	254	20	34	9.4749
dddoooooodddd:	chr22:41324116-41324375(+)$1	259	217	231	7.2090
eeeennnnneeeee	chr14:21733064-21733276(-)$1	212	109	123	9.4749
ddddnnnnnddddg	chr20:46283191-46283425(+)$1	234	190	204	10.2030
ddddnnnnndddd:	chr11:62360729-62361019(-)$1	290	147	161	9.6088
ggggnnnnnggggg	chr1:245007914-245008169(-)$1	255	40	54	7.6192
eeeennnnneeeee	chr7:23509866-23510146(-)$1	280	39	53	9.4749
ddddnnnnndddd]	chr19:1272712-1272930(+)$1	218	154	168	10.3421
eeeeooooooeeee	chr3:27414420-27414667(-)$1	247	164	178	7.0954
eeeennnnneeeee	chr13:28867447-28867695(+)$1	248	193	207	9.4749
ddddnnnnndddd3	chr14:21928598-21928850(-)$1	252	190	204	10.3265
ecccnnnnnccc]e	chr7:923080-923333(+)$1	253	27	41	8.4374
"cccnnnnnccc44	chr19:58374235-58374491(+)$1	256	45	59	8.0307
cc[annnnna]ccc	chr2:3520092-3520338(-)$1	246	21	35	7.8744
dddooooooddddc	chr19:54972085-54972299(+)$1	214	133	147	7.8131
ddddnnnnndddd3	chr7:44102784-44103063(+)$1	279	238	252	10.3265
ddddnnnnnddddb	chr7:7284762-7285021(+)$1	259	168	182	10.0322
eeeennnnneeeee	chr1:203771899-203772151(+)$1	252	154	168	9.4749
dddooooooddddF	chr17:37005906-37006178(-)$1	272	17	31	7.4848
eeeeooooooeeee	chr12:123741917-123742176(-)$1	259	42	56	7.0954
eeeennnnneeeee	chr10:72637484-72637739(+)$1	255	218	232	9.4749
eeeennnnneeeee	chr17:17115677-17115892(-)$1	215	158	172	9.4749
ddddnnnnndddd:	chr15:67486026-67486281(+)$1	255	147	161	9.6088
[cccnnnnncccff	chr17:80214237-80214490(-)$1	253	144	158	7.8755
eeeeooooooeeee	chr19:8467452-8467687(+)$1	235	216	230	7.0954
ddddnnnnnddddb	chr12:1021754-1021992(-)$1	238	131	145	10.0322
dcccnnnnnccc]d	chr16:2316044-2316311(-)$1	267	127	141	8.3527
dddoooooodddd]	chr16:1830644-1830906(+)$1	262	159	173	7.9423
ddddnnnnndddd]	chr19:1272658-1272912(+)$1	254	208	222	10.3421
ddddnnnnndddd:	chr12:133348981-133349216(-)$1	235	37	51	9.6088
ddddnnnnndddd]	chr20:43560099-43560339(+)$1	240	134	148	10.3421
dddooooooddddc	chr19:54972072-54972285(+)$1	213	146	160	7.8131
ddddnnnnndddd:	chr12:133349069-133349324(-)$1	255	145	159	9.6088
eeeennnnneeeee	chr12:7052894-7053130(+)$1	236	101	115	9.4749
ddddoooooodddd	chr15:99192583-99192826(+)$1	243	41	55	7.5844
dddoooooodddd2	chr5:179265531-179265777(-)$1	246	94	108	7.7033
ddddnnnnnddddb	chr9:94056682-94056936(-)$1	254	231	245	10.0322
ddddnnnnnddddc	chr3:185765240-185765490(-)$1	250	48	62	10.2128

#otherMatches

#Seq PSSM
caccaggugggugu	chr20:33933154-33933407(-)$1	253	212	226	10.3421
UCCUCGCCCAGGAC	chr19:48984694-48984931(+)$1	237	2	16	9.6088
AAAGAUUUCCUUUA	chr17:30705761-30706005(+)$1	244	2	16	9.4749
CUCCAGGAAGAGCC	chr19:54972099-54972331(+)$1	232	119	133	7.8131
ggugugugccacca	chr4:38945625-38945853(+)$1	228	206	220	10.3265
uuuuguuuugagac	chr6:31725362-31725621(+)$1	259	98	112	9.4749
ccacccaaaguggu	chr5:42801524-42801787(-)$1	263	5	19	9.4749
cccaaagugcuggg	chr19:37035966-37036222(-)$1	256	32	46	7.0954
ggugcacaccacca	chr14:75598950-75599205(-)$1	255	239	253	9.6088
acuccagccugagu	chr13:20247146-20247355(+)$1	209	13	27	7.0954
ccucauguggugga	chr2:3520138-3520348(-)$1	210	31	45	7.8744
UGCUGAAAUGUAAC	chr6:149980424-149980699(-)$1	275	50	64	7.9423
UCAUUGCAUUGAGU	chr15:25219680-25219956(+)$1	276	50	64	7.2090
CAUUAUCAAGAUGA	chr14:21732133-21732349(-)$1	216	87	101	9.4749
ucagaguagcuggg	chr19:5909419-5909658(+)$1	239	193	207	8.3829
GAGAUUUUCUUCUC	chr1:146630041-146630280(-)$1	239	207	221	7.0954
ugucacucaggcug	chr16:23477142-23477368(-)$1	226	124	138	7.8838
CCAUGAGAAAUGUG	chr4:175239118-175239364(+)$1	246	55	69	8.0881
GUCAGGUUGUGGCU	chr3:42661594-42661848(+)$1	254	20	34	9.4749
ccaaguaacuggga	chr22:41324116-41324375(+)$1	259	217	231	7.2090
agggucucucucug	chr14:21733064-21733276(-)$1	212	109	123	9.4749
UAAAUGCUUUUUAA	chr20:46283191-46283425(+)$1	234	190	204	10.2030
UUCCUAAUUGGAGU	chr11:62360729-62361019(-)$1	290	147	161	9.6088
CAUUCAUGCAGUGC	chr1:245007914-245008169(-)$1	255	40	54	7.6192
GUGAUAUUUUCACA	chr7:23509866-23510146(-)$1	280	39	53	9.4749
AGCUGAGCAAGCUG	chr19:1272712-1272930(+)$1	218	154	168	10.3421
gaauuuuauuguuc	chr3:27414420-27414667(-)$1	247	164	178	7.0954
UUCAGAAGAUGAAC	chr13:28867447-28867695(+)$1	248	193	207	9.4749
gcaguucuccugcc	chr14:21928598-21928850(-)$1	252	190	204	10.3265
UUAAUGUUUUUGUA	chr7:923080-923333(+)$1	253	27	41	8.4374
AGUGAAGAACAUGA	chr19:58374235-58374491(+)$1	256	45	59	8.0307
ccucauguggugga	chr2:3520092-3520338(-)$1	246	21	35	7.8744
CUCCAGGAAGAGCC	chr19:54972085-54972299(+)$1	214	133	147	7.8131
ggugagcgccacca	chr7:44102784-44103063(+)$1	279	238	252	10.3265
cccgaguagcgggg	chr7:7284762-7285021(+)$1	259	168	182	10.0322
UUCAUGGAUUGAGU	chr1:203771899-203772151(+)$1	252	154	168	9.4749
aucucaagugaucu	chr17:37005906-37006178(-)$1	272	17	31	7.4848
cccaaggugcuggg	chr12:123741917-123742176(-)$1	259	42	56	7.0954
cugggauuaccggc	chr10:72637484-72637739(+)$1	255	218	232	9.4749
gcaguccuccugcu	chr17:17115677-17115892(-)$1	215	158	172	9.4749
AGGCUAAAUGCUUU	chr15:67486026-67486281(+)$1	255	147	161	9.6088
ugccaucacggcuc	chr17:80214237-80214490(-)$1	253	144	158	7.8755
cccgaguagcuggg	chr19:8467452-8467687(+)$1	235	216	230	7.0954
acuggaguucagug	chr12:1021754-1021992(-)$1	238	131	145	10.0322
GGCGUGCACUGCAC	chr16:2316044-2316311(-)$1	267	127	141	8.3527
gcucacugcagccu	chr16:1830644-1830906(+)$1	262	159	173	7.9423
AGCUGAGCAAGCUG	chr19:1272658-1272912(+)$1	254	208	222	10.3421
GAUACUGAAUAUCA	chr12:133348981-133349216(-)$1	235	37	51	9.6088
caagugauucuugu	chr20:43560099-43560339(+)$1	240	134	148	10.3421
CUCCAGGAAGAGCC	chr19:54972072-54972285(+)$1	213	146	160	7.8131
GAUACUGAAUAUCA	chr12:133349069-133349324(-)$1	255	145	159	9.6088
uagaauuugucuag	chr12:7052894-7053130(+)$1	236	101	115	9.4749
uccgcgcacccgga	chr15:99192583-99192826(+)$1	243	41	55	7.5844
cuuuuuuuugagac	chr5:179265531-179265777(-)$1	246	94	108	7.7033
ggugcacaccaccg	chr9:94056682-94056936(-)$1	254	231	245	10.0322
GUGCUUUCUGCACC	chr3:185765240-185765490(-)$1	250	48	62	10.2128

#DB
((((.....)))).	chr20:33933154-33933407(-)$1	1	212	226	10.3421
((((.....)))).	chr19:48984694-48984931(+)$1	1	2	16	9.6088
((((.....)))))	chr17:30705761-30706005(+)$1	1	2	16	9.4749
(((......)))))	chr19:54972099-54972331(+)$1	1	119	133	7.8131
((((.....)))).	chr4:38945625-38945853(+)$1	1	206	220	10.3265
((((.....)))))	chr6:31725362-31725621(+)$1	1	98	112	9.4749
((((.....)))))	chr5:42801524-42801787(-)$1	1	5	19	9.4749
((((......))))	chr19:37035966-37036222(-)$1	1	32	46	7.0954
((((.....)))).	chr14:75598950-75599205(-)$1	1	239	253	9.6088
((((......))))	chr13:20247146-20247355(+)$1	1	13	27	7.0954
((.(.....).)))	chr2:3520138-3520348(-)$1	1	31	45	7.8744
(((......)))).	chr6:149980424-149980699(-)$1	1	50	64	7.9423
(((......)))).	chr15:25219680-25219956(+)$1	1	50	64	7.2090
((((.....)))))	chr14:21732133-21732349(-)$1	1	87	101	9.4749
.(((.....)))))	chr19:5909419-5909658(+)$1	1	193	207	8.3829
((((......))))	chr1:146630041-146630280(-)$1	1	207	221	7.0954
((((.....))).)	chr16:23477142-23477368(-)$1	1	124	138	7.8838
((((.....))).)	chr4:175239118-175239364(+)$1	1	55	69	8.0881
((((.....)))))	chr3:42661594-42661848(+)$1	1	20	34	9.4749
(((......)))).	chr22:41324116-41324375(+)$1	1	217	231	7.2090
((((.....)))))	chr14:21733064-21733276(-)$1	1	109	123	9.4749
((((.....)))))	chr20:46283191-46283425(+)$1	1	190	204	10.2030
((((.....)))).	chr11:62360729-62361019(-)$1	1	147	161	9.6088
((((.....)))))	chr1:245007914-245008169(-)$1	1	40	54	7.6192
((((.....)))))	chr7:23509866-23510146(-)$1	1	39	53	9.4749
((((.....)))).	chr19:1272712-1272930(+)$1	1	154	168	10.3421
((((......))))	chr3:27414420-27414667(-)$1	1	164	178	7.0954
((((.....)))))	chr13:28867447-28867695(+)$1	1	193	207	9.4749
((((.....)))).	chr14:21928598-21928850(-)$1	1	190	204	10.3265
((((.....))).)	chr7:923080-923333(+)$1	1	27	41	8.4374
.(((.....)))..	chr19:58374235-58374491(+)$1	1	45	59	8.0307
((.(.....).)))	chr2:3520092-3520338(-)$1	1	21	35	7.8744
(((......)))))	chr19:54972085-54972299(+)$1	1	133	147	7.8131
((((.....)))).	chr7:44102784-44103063(+)$1	1	238	252	10.3265
((((.....))))(	chr7:7284762-7285021(+)$1	1	168	182	10.0322
((((.....)))))	chr1:203771899-203772151(+)$1	1	154	168	9.4749
(((......))))(	chr17:37005906-37006178(-)$1	1	17	31	7.4848
((((......))))	chr12:123741917-123742176(-)$1	1	42	56	7.0954
((((.....)))))	chr10:72637484-72637739(+)$1	1	218	232	9.4749
((((.....)))))	chr17:17115677-17115892(-)$1	1	158	172	9.4749
((((.....)))).	chr15:67486026-67486281(+)$1	1	147	161	9.6088
.(((.....)))))	chr17:80214237-80214490(-)$1	1	144	158	7.8755
((((......))))	chr19:8467452-8467687(+)$1	1	216	230	7.0954
((((.....)))))	chr12:1021754-1021992(-)$1	1	131	145	10.0322
((((.....))).)	chr16:2316044-2316311(-)$1	1	127	141	8.3527
(((......)))).	chr16:1830644-1830906(+)$1	1	159	173	7.9423
((((.....)))).	chr19:1272658-1272912(+)$1	1	208	222	10.3421
((((.....)))).	chr12:133348981-133349216(-)$1	1	37	51	9.6088
((((.....)))).	chr20:43560099-43560339(+)$1	1	134	148	10.3421
(((......)))))	chr19:54972072-54972285(+)$1	1	146	160	7.8131
((((.....)))).	chr12:133349069-133349324(-)$1	1	145	159	9.6088
((((.....)))))	chr12:7052894-7053130(+)$1	1	101	115	9.4749
((((......))))	chr15:99192583-99192826(+)$1	1	41	55	7.5844
(((......)))).	chr5:179265531-179265777(-)$1	1	94	108	7.7033
((((.....)))))	chr9:94056682-94056936(-)$1	1	231	245	10.0322
((((.....))))(	chr3:185765240-185765490(-)$1	1	48	62	10.2128

#PSSM
d : 0.51	e : 0.33	c : 0.03	! : 0.01	f : 0.01	a : 0.01	g : 0.01	" : 0.01	[ : 0.01	
d : 0.49	e : 0.32	c : 0.16	g : 0.01	
d : 0.49	e : 0.32	c : 0.12	[ : 0.03	g : 0.01	
d : 0.33	e : 0.32	o : 0.16	c : 0.12	a : 0.03	g : 0.01	
n : 0.71	o : 0.28	
n : 0.71	o : 0.28	
n : 0.71	o : 0.28	
n : 0.71	o : 0.28	
n : 0.71	o : 0.28	
d : 0.48	e : 0.21	o : 0.12	c : 0.12	a : 0.03	g : 0.01	
d : 0.49	e : 0.32	c : 0.12	] : 0.03	g : 0.01	
d : 0.49	e : 0.32	c : 0.16	g : 0.01	
d : 0.51	e : 0.32	] : 0.07	c : 0.03	g : 0.01	4 : 0.01	f : 0.01	
e : 0.33	: : 0.14	] : 0.10	c : 0.10	3 : 0.05	d : 0.05	b : 0.05	f : 0.03	g : 0.03	a : 0.01	4 : 0.01	F : 0.01	2 : 0.01	

#score	493.72107849864824
#seq	56
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_UTR_m3_run2.txt

#BEAR
cccaqqqqqqqqa]cc	chr2:240908924-240909162(-)$1	238	151	167	13.3242
iiiiqqqqqqqqiiii	chr11:8638119-8638399(-)$1	280	199	215	13.0778
ggggqqqqqqqqgggg	chr3:187898030-187898292(+)$1	262	77	93	13.1466
ddddqqqqqqqqdddd	chr19:45912055-45912311(-)$1	256	139	155	14.0224
b[bbqqqqqqqqbb]b	chr2:240675-240980(-)$1	305	248	264	12.0384
!cccqqqqqqqqccc]	chr4:106159878-106160138(+)$1	260	209	225	13.9277
ddddqqqqqqqqdddd	chr2:74093032-74093297(+)$1	265	247	263	14.0224
ddddqqqqqqqqdddd	chr3:24471546-24471799(-)$1	253	178	194	14.0224
eeeeqqqqqqqqeeee	chr19:54646376-54646615(+)$1	239	21	37	12.9944
ccccqqqqqqqqccc]	chr11:12959826-12960074(+)$1	248	104	120	13.8670
ddddqqqqqqqqdddd	chr3:187897475-187897752(+)$1	277	176	192	14.0224
ddddqqqqqqqqdddd	chr1:113668121-113668371(+)$1	250	230	246	14.0224
ddddqqqqqqqqdddd	chr2:74093561-74093810(+)$1	249	232	248	14.0224
[cccqqqqqqqqccc]	chr2:74091132-74091402(+)$1	270	21	37	13.8978
eeeeqqqqqqqqeeee	chr2:240066-240362(-)$1	296	67	83	12.9944
:cccqqqqqqqqccc:	chr2:61153801-61154068(+)$1	267	141	157	12.0078
ffffqqqqqqqqffff	chr11:116739512-116739781(-)$1	269	198	214	12.5735
ddddqqqqqqqqdddd	chr4:1386719-1386971(+)$1	252	180	196	14.0224
:cccqqqqqqqqccc:	chr1:55352268-55352513(-)$1	245	93	109	12.0078
ddddqqqqqqqqdddd	chr2:71213950-71214226(-)$1	276	26	42	14.0224
cccaqqqqqqqqa]cc	chr2:240908879-240909118(-)$1	239	107	123	13.3242
!cccqqqqqqqqccc]	chr2:85548309-85548537(-)$1	228	182	198	13.9277
ggggqqqqqqqqgggg	chr15:49517295-49517548(+)$1	253	221	237	13.1466
ffffqqqqqqqqffff	chr16:57815893-57816197(-)$1	304	225	241	12.5735
ddddqqqqqqqqdddd	chr2:71214997-71215273(-)$1	276	89	105	14.0224
ddddqqqqqqqqdddd	chr5:112228298-112228614(-)$1	316	168	184	14.0224
:cccqqqqqqqqccc:	chr2:75883314-75883541(+)$1	227	104	120	12.0078
ddddqqqqqqqqdddd	chr10:124146475-124146709(+)$1	234	180	196	14.0224
ddddqqqqqqqqdddd	chr15:93565082-93565387(+)$1	305	190	206	14.0224
i[bbqqqqqqqqbbii	chrX:47056923-47057174(+)$1	251	167	183	12.5880
ccccqqqqqqqqccc]	chr4:186682542-186682895(-)$1	353	213	229	13.8670
eeeeqqqqqqqqeeee	chr2:240180-240451(-)$1	271	156	172	12.9944
!!bbqqqqqqqqbbcc	chr12:66250216-66250494(+)$1	278	41	57	12.7822
ffffqqqqqqqqffff	chr2:85547715-85547939(-)$1	224	129	145	12.5735
ddddqqqqqqqqdddd	chr2:169721742-169722047(-)$1	305	247	263	14.0224
ffffqqqqqqqqffff	chr2:85547685-85547915(-)$1	230	105	121	12.5735
[cccqqqqqqqqccc3	chr2:71213452-71213749(-)$1	297	230	246	13.8246
ffffqqqqqqqqffff	chr15:48454940-48455204(-)$1	264	203	219	12.5735
ddddqqqqqqqqdddd	chr4:1386819-1387066(+)$1	247	80	96	14.0224
ddddqqqqqqqqdddd	chr17:55173073-55173339(+)$1	266	0	16	14.0224
ddddqqqqqqqqdddd	chr9:5785784-5786033(-)$1	249	172	188	14.0224
ddddqqqqqqqqdddd	chr20:10642761-10642991(-)$1	230	49	65	14.0224
ddddqqqqqqqqdddd	chr2:71213567-71213820(-)$1	253	5	21	14.0224
ggggqqqqqqqqgggg	chr13:50067961-50068206(+)$1	245	181	197	13.1466
ecccqqqqqqqqccc]	chr11:116739740-116739980(-)$1	240	27	43	13.8456
ggggqqqqqqqqgggg	chr12:53909381-53909647(-)$1	266	242	258	13.1466
[cccqqqqqqqqccc]	chr17:15947775-15948039(-)$1	264	67	83	13.8978
eeeeqqqqqqqqeeee	chr16:70191483-70191745(+)$1	262	5	21	12.9944
ffffqqqqqqqqffff	chr2:85547617-85547885(-)$1	268	75	91	12.5735
b[bbqqqqqqqqbb]b	chr2:71214752-71215037(-)$1	285	109	125	12.0384
!!bbqqqqqqqqbb44	chr11:6504152-6504406(+)$1	254	214	230	12.5914
!cccqqqqqqqqccc2	chr10:71922624-71922874(-)$1	250	65	81	13.6477
ddddqqqqqqqqdddd	chr14:54955210-54955499(-)$1	289	45	61	14.0224
a[bbqqqqqqqqbb]a	chr2:47140930-47141209(-)$1	279	127	143	12.4711
eeeeqqqqqqqqeeee	chr11:119171608-119171867(+)$1	259	106	122	12.9944

#otherMatches

#Seq PSSM
aggcugaugagugucc	chr2:240908924-240909162(-)$1	238	151	167	13.3242
AUGCAGAGAGAAGCAU	chr11:8638119-8638399(-)$1	280	199	215	13.0778
GCUGUCCCCUGCCAGU	chr3:187898030-187898292(+)$1	262	77	93	13.1466
CCACCUUCACCUGUGG	chr19:45912055-45912311(-)$1	256	139	155	14.0224
auugguauuacacacu	chr2:240675-240980(-)$1	305	248	264	12.0384
uccuuaauccauaggc	chr4:106159878-106160138(+)$1	260	209	225	13.9277
GUUUGAGAUUAGAAGC	chr2:74093032-74093297(+)$1	265	247	263	14.0224
GGUCACUAACAGGGCC	chr3:24471546-24471799(-)$1	253	178	194	14.0224
GGAAUUUUCCACUUCC	chr19:54646376-54646615(+)$1	239	21	37	12.9944
UGCAUAUUAACCUGCU	chr11:12959826-12960074(+)$1	248	104	120	13.8670
UGUCUUUUGCAUGGCA	chr3:187897475-187897752(+)$1	277	176	192	14.0224
GAUACAAAUCACUAUC	chr1:113668121-113668371(+)$1	250	230	246	14.0224
UUCCAGCCGCCAGGAG	chr2:74093561-74093810(+)$1	249	232	248	14.0224
cuauauauucaaauau	chr2:74091132-74091402(+)$1	270	21	37	13.8978
cucccuucucuuggag	chr2:240066-240362(-)$1	296	67	83	12.9944
UGAAUAUGUCCCUUCU	chr2:61153801-61154068(+)$1	267	141	157	12.0078
UAUCUUAUUGAUGGUA	chr11:116739512-116739781(-)$1	269	198	214	12.5735
uuccuuuauuccggaa	chr4:1386719-1386971(+)$1	252	180	196	14.0224
GUUGGAACGAAACAAA	chr1:55352268-55352513(-)$1	245	93	109	12.0078
cacucuacugccagug	chr2:71213950-71214226(-)$1	276	26	42	14.0224
aggcugaugagugucc	chr2:240908879-240909118(-)$1	239	107	123	13.3242
UAGUCUUAUAAUACUU	chr2:85548309-85548537(-)$1	228	182	198	13.9277
ccuguucagaaguggg	chr15:49517295-49517548(+)$1	253	221	237	13.1466
UUGCCUCUCUAAGCAA	chr16:57815893-57816197(-)$1	304	225	241	12.5735
UGGACUCACUUUUCUG	chr2:71214997-71215273(-)$1	276	89	105	14.0224
CUCCCUCCUCUCGGAG	chr5:112228298-112228614(-)$1	316	168	184	14.0224
UGGUCCAUACUCACCU	chr2:75883314-75883541(+)$1	227	104	120	12.0078
auuguuuguuuucaau	chr10:124146475-124146709(+)$1	234	180	196	14.0224
gggcuaaugauugccc	chr15:93565082-93565387(+)$1	305	190	206	14.0224
gacacuaaacucugcc	chrX:47056923-47057174(+)$1	251	167	183	12.5880
GGAGCAUAGCCUUUCU	chr4:186682542-186682895(-)$1	353	213	229	13.8670
cucccuucucuuggag	chr2:240180-240451(-)$1	271	156	172	12.9944
ccgcuucCUCUUGCCU	chr12:66250216-66250494(+)$1	278	41	57	12.7822
UUCUUCAUCCUCGGAG	chr2:85547715-85547939(-)$1	224	129	145	12.5735
ucaggcaagcagcuga	chr2:169721742-169722047(-)$1	305	247	263	14.0224
UUCUUCAUCCUCGGAG	chr2:85547685-85547915(-)$1	230	105	121	12.5735
uggcucccugcugccc	chr2:71213452-71213749(-)$1	297	230	246	13.8246
gcacgguugauggugc	chr15:48454940-48455204(-)$1	264	203	219	12.5735
uuccuuuauuccggaa	chr4:1386819-1387066(+)$1	247	80	96	14.0224
GCGAAGGGUUUCUUGC	chr17:55173073-55173339(+)$1	266	0	16	14.0224
UCAUUAGGAAAUGUGA	chr9:5785784-5786033(-)$1	249	172	188	14.0224
CUGCAUUUCCAGGUAG	chr20:10642761-10642991(-)$1	230	49	65	14.0224
uugcugucuucugcaa	chr2:71213567-71213820(-)$1	253	5	21	14.0224
ggaauuccuguuuucc	chr13:50067961-50068206(+)$1	245	181	197	13.1466
AGCUCCUUCUACAGCU	chr11:116739740-116739980(-)$1	240	27	43	13.8456
GGGAGCAAUUCAUCUC	chr12:53909381-53909647(-)$1	266	242	258	13.1466
GCUGAGUAGAUGCAGG	chr17:15947775-15948039(-)$1	264	67	83	13.8978
AUCUCUAUAAUAAGGU	chr16:70191483-70191745(+)$1	262	5	21	12.9944
UUCUUCAUCCUCGGAG	chr2:85547617-85547885(-)$1	268	75	91	12.5735
ACAAUAUCCUAUUUAU	chr2:71214752-71215037(-)$1	285	109	125	12.0384
GAGGAAGAGAAACUGA	chr11:6504152-6504406(+)$1	254	214	230	12.5914
acuuuugcuuucaagg	chr10:71922624-71922874(-)$1	250	65	81	13.6477
CAGCAUCUUCCAGCUG	chr14:54955210-54955499(-)$1	289	45	61	14.0224
GGUCGGAUGAGAGAGC	chr2:47140930-47141209(-)$1	279	127	143	12.4711
CCUUUGCCCUUUAAGG	chr11:119171608-119171867(+)$1	259	106	122	12.9944

#DB
((((........).))	chr2:240908924-240909162(-)$1	1	151	167	13.3242
((((........))))	chr11:8638119-8638399(-)$1	1	199	215	13.0778
((((........))))	chr3:187898030-187898292(+)$1	1	77	93	13.1466
((((........))))	chr19:45912055-45912311(-)$1	1	139	155	14.0224
(.((........)).)	chr2:240675-240980(-)$1	1	248	264	12.0384
.(((........))).	chr4:106159878-106160138(+)$1	1	209	225	13.9277
((((........))))	chr2:74093032-74093297(+)$1	1	247	263	14.0224
((((........))))	chr3:24471546-24471799(-)$1	1	178	194	14.0224
((((........))))	chr19:54646376-54646615(+)$1	1	21	37	12.9944
((((........))).	chr11:12959826-12960074(+)$1	1	104	120	13.8670
((((........))))	chr3:187897475-187897752(+)$1	1	176	192	14.0224
((((........))))	chr1:113668121-113668371(+)$1	1	230	246	14.0224
((((........))))	chr2:74093561-74093810(+)$1	1	232	248	14.0224
.(((........))).	chr2:74091132-74091402(+)$1	1	21	37	13.8978
((((........))))	chr2:240066-240362(-)$1	1	67	83	12.9944
.(((........))).	chr2:61153801-61154068(+)$1	1	141	157	12.0078
((((........))))	chr11:116739512-116739781(-)$1	1	198	214	12.5735
((((........))))	chr4:1386719-1386971(+)$1	1	180	196	14.0224
.(((........))).	chr1:55352268-55352513(-)$1	1	93	109	12.0078
((((........))))	chr2:71213950-71214226(-)$1	1	26	42	14.0224
((((........).))	chr2:240908879-240909118(-)$1	1	107	123	13.3242
.(((........))).	chr2:85548309-85548537(-)$1	1	182	198	13.9277
((((........))))	chr15:49517295-49517548(+)$1	1	221	237	13.1466
((((........))))	chr16:57815893-57816197(-)$1	1	225	241	12.5735
((((........))))	chr2:71214997-71215273(-)$1	1	89	105	14.0224
((((........))))	chr5:112228298-112228614(-)$1	1	168	184	14.0224
.(((........))).	chr2:75883314-75883541(+)$1	1	104	120	12.0078
((((........))))	chr10:124146475-124146709(+)$1	1	180	196	14.0224
((((........))))	chr15:93565082-93565387(+)$1	1	190	206	14.0224
(.((........))))	chrX:47056923-47057174(+)$1	1	167	183	12.5880
((((........))).	chr4:186682542-186682895(-)$1	1	213	229	13.8670
((((........))))	chr2:240180-240451(-)$1	1	156	172	12.9944
..((........))))	chr12:66250216-66250494(+)$1	1	41	57	12.7822
((((........))))	chr2:85547715-85547939(-)$1	1	129	145	12.5735
((((........))))	chr2:169721742-169722047(-)$1	1	247	263	14.0224
((((........))))	chr2:85547685-85547915(-)$1	1	105	121	12.5735
.(((........))).	chr2:71213452-71213749(-)$1	1	230	246	13.8246
((((........))))	chr15:48454940-48455204(-)$1	1	203	219	12.5735
((((........))))	chr4:1386819-1387066(+)$1	1	80	96	14.0224
((((........))))	chr17:55173073-55173339(+)$1	1	0	16	14.0224
((((........))))	chr9:5785784-5786033(-)$1	1	172	188	14.0224
((((........))))	chr20:10642761-10642991(-)$1	1	49	65	14.0224
((((........))))	chr2:71213567-71213820(-)$1	1	5	21	14.0224
((((........))))	chr13:50067961-50068206(+)$1	1	181	197	13.1466
((((........))).	chr11:116739740-116739980(-)$1	1	27	43	13.8456
((((........))))	chr12:53909381-53909647(-)$1	1	242	258	13.1466
.(((........))).	chr17:15947775-15948039(-)$1	1	67	83	13.8978
((((........))))	chr16:70191483-70191745(+)$1	1	5	21	12.9944
((((........))))	chr2:85547617-85547885(-)$1	1	75	91	12.5735
(.((........)).)	chr2:71214752-71215037(-)$1	1	109	125	12.0384
..((........))..	chr11:6504152-6504406(+)$1	1	214	230	12.5914
.(((........))).	chr10:71922624-71922874(-)$1	1	65	81	13.6477
((((........))))	chr14:54955210-54955499(-)$1	1	45	61	14.0224
(.((........)).)	chr2:47140930-47141209(-)$1	1	127	143	12.4711
((((........))))	chr11:119171608-119171867(+)$1	1	106	122	12.9944

#PSSM
d : 0.34	e : 0.10	f : 0.10	! : 0.09	c : 0.07	g : 0.07	[ : 0.05	: : 0.05	i : 0.03	b : 0.03	a : 0.01	
d : 0.34	c : 0.25	f : 0.10	e : 0.09	g : 0.07	[ : 0.07	! : 0.03	i : 0.01	
d : 0.34	c : 0.25	b : 0.10	f : 0.10	e : 0.09	g : 0.07	i : 0.01	
d : 0.34	c : 0.21	b : 0.10	f : 0.10	e : 0.09	g : 0.07	a : 0.03	i : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.34	c : 0.21	b : 0.10	f : 0.10	e : 0.09	g : 0.07	a : 0.03	i : 0.01	
d : 0.34	c : 0.21	b : 0.10	f : 0.10	e : 0.09	g : 0.07	] : 0.03	i : 0.01	
d : 0.34	c : 0.27	f : 0.10	e : 0.09	g : 0.07	] : 0.05	i : 0.03	4 : 0.01	
d : 0.34	] : 0.12	f : 0.10	e : 0.09	g : 0.07	c : 0.05	: : 0.05	i : 0.03	b : 0.03	3 : 0.01	4 : 0.01	2 : 0.01	a : 0.01	

#score	734.3893659835909
#seq	55
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_transcript_m2_run2.txt

#BEAR
ddd[ddddvvvvvvvvvvvvvdddd]d	chr10:21990017-21990236(+)$1	219	147	174	22.6619
ffff!!ccctttttttttttccc22ff	chr7:95922763-95922998(-)$1	235	116	143	23.5446
dddd[ddddtttttttttttdddd]dd	chr7:158441408-158441670(-)$1	262	199	226	22.9207
[eeeeeyyyyyyyyyyyyyyyyeeeee	chr5:19076249-19076502(-)$1	253	85	112	22.4376
c[ffffffuuuuuuuuuuuuffffff]	chr16:89483245-89483488(-)$1	243	35	62	23.0649
[hhhhhhhhttttttttttthhhhhhh	chr17:15955614-15955857(-)$1	243	23	50	21.7135
!!ffffffvvvvvvvvvvvvvffffff	chr16:81032535-81032770(-)$1	235	18	45	22.3717
ffffeeeeettttttttttteeeee]f	chr12:11267455-11267695(-)$1	240	165	192	23.7429
f[ccc[ccctttttttttttccc]ccc	chr1:207524212-207524481(+)$1	269	65	92	24.0673
gggggyyyyyyyyyyyyyyyygggggg	chr8:144538901-144539200(-)$1	299	34	61	23.1627
===="""bbtttttttttttbb]====	chr13:30820676-30820924(-)$1	248	38	65	23.8148
iiiii!!bbtttttttttttbb22iii	chr3:47698688-47698907(-)$1	219	169	196	23.7123
[ddddyyyyyyyyyyyyyyyyddddhh	chr15:44937414-44937688(-)$1	274	57	84	21.9709
g:gggggggvvvvvvvvvvvvvggggg	chr1:27028534-27028784(+)$1	250	212	239	21.5656
d[ffffffuuuuuuuuuuuuffffff]	chr16:68143042-68143255(+)$1	213	16	43	22.9407
[ccc[a[awwwwwwwwwwwwwwa]a]c	chr7:6741783-6742082(-)$1	299	91	118	22.3799
iiibb!!bbtttttttttttbb22bb]	chr7:64136645-64136875(+)$1	230	119	146	22.3251
ggggggwwwwwwwwwwwwwwggggggg	chr5:74817500-74817739(+)$1	239	140	167	21.9115
eeeeeeeeuuuuuuuuuuuueeeee22	chr6:44384027-44384277(+)$1	250	148	175	23.8096
ccc[eeeeeuuuuuuuuuuuueeeeec	chr14:28043407-28043679(-)$1	272	180	207	23.6641
:ccc[dddduuuuuuuuuuuudddd]c	chr4:124198290-124198549(+)$1	259	77	104	22.8286
"""eeeeeuuuuuuuuuuuueeeee33	chr7:63994727-63994974(-)$1	247	132	159	24.4232
"bb!!cccwwwwwwwwwwwwwwccc22	chr7:127450248-127450519(+)$1	271	9	36	21.9027
===[dddduuuuuuuuuuuudddd===	chr1:246106326-246106577(-)$1	251	63	90	24.0315
gggggggvvvvvvvvvvvvvggggggg	chr12:95392953-95393199(-)$1	246	69	96	23.0934
iiiiiiiiitttttttttttiiiiiii	chr15:29217393-29217634(+)$1	241	90	117	24.0850
dd!!ddddvvvvvvvvvvvvvdddd22	chr12:28440308-28440559(+)$1	251	102	129	23.1453
!!gggggggtttttttttttggggggg	chr3:15832122-15832351(-)$1	229	164	191	24.3261
ff[cccyyyyyyyyyyyyyyyyccc]f	chr1:176046475-176046736(-)$1	261	151	178	22.5935
ffffffffftttttttttttffffff:	chr6:135294317-135294549(-)$1	232	46	73	21.6424
:hhhhhhhhuuuuuuuuuuuuhhhhhh	chr11:47195054-47195294(-)$1	240	152	179	20.5786
dddd[bbvvvvvvvvvvvvvbb]dddd	chr4:68347333-68347559(-)$1	226	68	95	21.1046
%%%%eeeeettttttttttteeeee66	chr1:27032172-27032429(+)$1	257	185	212	20.5566
!a!!a[bbvvvvvvvvvvvvvbb]a22	chr18:13026253-13026556(+)$1	303	41	68	23.0852
ggggg!!bbtttttttttttbb22ggg	chr16:23862453-23862709(+)$1	256	176	203	23.7432
#ddddyyyyyyyyyyyyyyyydddd44	chr5:53651537-53651772(+)$1	235	159	186	22.2034
eee!!dddduuuuuuuuuuuudddd33	chr1:213365845-213366109(+)$1	264	214	241	23.8169
gggggyyyyyyyyyyyyyyyygggggg	chr13:96659373-96659634(-)$1	261	138	165	23.1627
ccffffffuuuuuuuuuuuuffffff]	chr7:107159821-107160056(-)$1	235	25	52	22.9794
bb[cccyyyyyyyyyyyyyyyyccc]b	chr5:131094781-131095023(-)$1	242	121	148	22.1395
b!!eeeeeuuuuuuuuuuuueeeee22	chr22:17124843-17125087(+)$1	244	108	135	24.1065
[eeeeewwwwwwwwwwwwwweeeee33	chr4:1386354-1386645(+)$1	291	84	111	22.0145
dd::eeeeettttttttttteeeeedd	chr3:185645148-185645386(-)$1	238	152	179	21.2819
[ccc!!cccuuuuuuuuuuuuccc22c	chr7:107138564-107138819(-)$1	255	30	57	24.1380
ccc!!ddddtttttttttttdddd22c	chr8:141204771-141205056(-)$1	285	51	78	23.9890
ee!!ddddvvvvvvvvvvvvvdddd22	chr5:37532993-37533280(+)$1	287	21	48	23.1787
=========uuuuuuuuuuuu======	chr13:96341186-96341442(+)$1	256	191	218	24.1202
e!!eeeeeuuuuuuuuuuuueeeee22	chr2:37434691-37434919(-)$1	228	54	81	24.2255
fff####bbuuuuuuuuuuuubb22ff	chr8:102217052-102217370(-)$1	318	234	261	22.1304
b[bb!!ccctttttttttttccc22bb	chr15:58324856-58325142(-)$1	286	7	34	22.7466
ggggg[bbuuuuuuuuuuuubbggggg	chr3:101127152-101127422(-)$1	270	101	128	23.8880
dd!!eeeeettttttttttteeeeedd	chr16:10543183-10543417(+)$1	234	120	147	23.6359
cc!!eeeeettttttttttteeeee22	chr16:23863896-23864105(+)$1	209	121	148	24.5012
gggg[ddddtttttttttttdddd]gg	chr7:155460062-155460314(+)$1	252	67	94	24.1551
chhhhhhhhttttttttttthhhhhhh	chr6:147540647-147540897(+)$1	250	66	93	21.5482
::ffffffuuuuuuuuuuuuffffff:	chr4:13438693-13438932(-)$1	239	122	149	20.0005
!ccc[ddddtttttttttttddddccc	chr3:6579669-6579934(+)$1	265	153	180	23.9168

#otherMatches

#Seq PSSM
uucaucaauuuuguuuaccuuuugaag	chr10:21990017-21990236(+)$1	219	147	174	22.6619
cugaguucuuuguagauucuggauauu	chr7:95922763-95922998(-)$1	235	116	143	23.5446
GUGGUCCAUUUGGCGUGGUUGUGGUCC	chr7:158441408-158441670(-)$1	262	199	226	22.9207
uguccuuagcucacuuuuuaaugggau	chr5:19076249-19076502(-)$1	253	85	112	22.4376
GAUGGUUUGUAGUUAGAAUGAAGCCAG	chr16:89483245-89483488(-)$1	243	35	62	23.0649
agaaauuuauccauuucuuuuagauuu	chr17:15955614-15955857(-)$1	243	23	50	21.7135
caguuugacuucuuuucuuauucggau	chr16:81032535-81032770(-)$1	235	18	45	22.3717
auaauauaguuuuuugcuuuuuauguu	chr12:11267455-11267695(-)$1	240	165	192	23.7429
gugauguuacuuuguuaauuugagauu	chr1:207524212-207524481(+)$1	269	65	92	24.0673
guggauuugucuguuucuccuuucaua	chr8:144538901-144539200(-)$1	299	34	61	23.1627
agugucuguucauauccuuugcccacu	chr13:30820676-30820924(-)$1	248	38	65	23.8148
uaggguuguucaaguugucuacuuccu	chr3:47698688-47698907(-)$1	219	169	196	23.7123
caguuucaaucaucugcauauggcuag	chr15:44937414-44937688(-)$1	274	57	84	21.9709
AUCGCUAUGGUUUAAAAAACUACAUGG	chr1:27028534-27028784(+)$1	250	212	239	21.5656
uucaaggggaacacugucagcuuuugc	chr16:68143042-68143255(+)$1	213	16	43	22.9407
GUGUGUGCguguguguaguuugggaga	chr7:6741783-6742082(-)$1	299	91	118	22.3799
gacuauuuggucaaguguuacauuuag	chr7:64136645-64136875(+)$1	230	119	146	22.3251
ggaggcuuaauuccagcuuugccucug	chr5:74817500-74817739(+)$1	239	140	167	21.9115
ggugcaaggacacacugaaacuugcca	chr6:44384027-44384277(+)$1	250	148	175	23.8096
uuccuguaguaaauuuuucauuuacag	chr14:28043407-28043679(-)$1	272	180	207	23.6641
uuaggcauauuuuauuauuuuuguggc	chr4:124198290-124198549(+)$1	259	77	104	22.8286
uacugcauuaugguuuugauaugcauu	chr7:63994727-63994974(-)$1	247	132	159	24.4232
UUUAUUGCCUUUUCAACCCAUUGCAUG	chr7:127450248-127450519(+)$1	271	9	36	21.9027
aaacucagccccuguauucuuugauuu	chr1:246106326-246106577(-)$1	251	63	90	24.0315
uuaacucuuugauccaucuugaguuga	chr12:95392953-95393199(-)$1	246	69	96	23.0934
aauaauuuguuguggauuuuuaaguug	chr15:29217393-29217634(+)$1	241	90	117	24.0850
uugcuugcuucucucagcuuuguaaaa	chr12:28440308-28440559(+)$1	251	102	129	23.1453
cuagcugugggucugucauauauggcu	chr3:15832122-15832351(-)$1	229	164	191	24.3261
guuggauuuuaucaaagacuuuuucug	chr1:176046475-176046736(-)$1	261	151	178	22.5935
aucauacaauauuuguccuuuuguguc	chr6:135294317-135294549(-)$1	232	46	73	21.6424
UUUGGUGGCAAGCUGAGGAAAGCCACC	chr11:47195054-47195294(-)$1	240	152	179	20.5786
ucaagucuuugauccaucuugaguuga	chr4:68347333-68347559(-)$1	226	68	95	21.1046
GGCUUCUGCAUUUUCUAAGGGUGGACU	chr1:27032172-27032429(+)$1	257	185	212	20.5566
ugauuuucuguaguuugaaaugauaug	chr18:13026253-13026556(+)$1	303	41	68	23.0852
guuuucccaacaccauuuacugaagag	chr16:23862453-23862709(+)$1	256	176	203	23.7432
aaugauaucaauucucccuauucauga	chr5:53651537-53651772(+)$1	235	159	186	22.2034
ucuuuauuauuucuuuucuuuuaauua	chr1:213365845-213366109(+)$1	264	214	241	23.8169
uugaauuuugucaaaugccuuuucagc	chr13:96659373-96659634(-)$1	261	138	165	23.1627
gucuugggaguguguauguguccaagu	chr7:107159821-107160056(-)$1	235	25	52	22.9794
uuagccaaaaauucuuugccaaggcca	chr5:131094781-131095023(-)$1	242	121	148	22.1395
ggauuuuugcaucuagucuaaaaaaaa	chr22:17124843-17125087(+)$1	244	108	135	24.1065
ucagucucuuuuuagcuucugacuguu	chr4:1386354-1386645(+)$1	291	84	111	22.0145
CUGUGGAGGAUCUCUGACACCCUCUCU	chr3:185645148-185645386(-)$1	238	152	179	21.2819
uagguugcauuuucacugucuuguuuc	chr7:107138564-107138819(-)$1	255	30	57	24.1380
AUCAUUGACUAUGUUUUAGUGUCACAG	chr8:141204771-141205056(-)$1	285	51	78	23.9890
auucaagguggcuguucagauucuucu	chr5:37532993-37533280(+)$1	287	21	48	23.1787
ccucuuugauuuuuuuuuuuuucgggg	chr13:96341186-96341442(+)$1	256	191	218	24.1202
auugucuguuuaugcucuuucagacuu	chr2:37434691-37434919(-)$1	228	54	81	24.2255
GUUAAAAGCUAGGGUCAGGAUGUGGAG	chr8:102217052-102217370(-)$1	318	234	261	22.1304
auauuugucuucuuaugccuggcuuau	chr15:58324856-58325142(-)$1	286	7	34	22.7466
uaauguccuuucuugguuuugguauua	chr3:101127152-101127422(-)$1	270	101	128	23.8880
gguugguagacuauuaauuacugccuc	chr16:10543183-10543417(+)$1	234	120	147	23.6359
gaacaugcugguacccuagaagcauca	chr16:23863896-23864105(+)$1	209	121	148	24.5012
uauucagauuguuuucaguugucucaa	chr7:155460062-155460314(+)$1	252	67	94	24.1551
uauucagauuguuucuucuugucugag	chr6:147540647-147540897(+)$1	250	66	93	21.5482
aaggaagguuucaguuucauucuucug	chr4:13438693-13438932(-)$1	239	122	149	20.0005
uuggcaggcuauuuauugcugccucca	chr3:6579669-6579934(+)$1	265	153	180	23.9168

#DB
(((.((((.............)))).)	chr10:21990017-21990236(+)$1	1	147	174	22.6619
((((..(((...........)))..))	chr7:95922763-95922998(-)$1	1	116	143	23.5446
((((.((((...........)))).))	chr7:158441408-158441670(-)$1	1	199	226	22.9207
.(((((................)))))	chr5:19076249-19076502(-)$1	1	85	112	22.4376
(.((((((............)))))).	chr16:89483245-89483488(-)$1	1	35	62	23.0649
.((((((((...........)))))))	chr17:15955614-15955857(-)$1	1	23	50	21.7135
..((((((.............))))))	chr16:81032535-81032770(-)$1	1	18	45	22.3717
(((((((((...........))))).)	chr12:11267455-11267695(-)$1	1	165	192	23.7429
(.(((.(((...........))).)))	chr1:207524212-207524481(+)$1	1	65	92	24.0673
(((((................))))))	chr8:144538901-144539200(-)$1	1	34	61	23.1627
((((...((...........)).))))	chr13:30820676-30820924(-)$1	1	38	65	23.8148
(((((..((...........))..)))	chr3:47698688-47698907(-)$1	1	169	196	23.7123
.((((................))))))	chr15:44937414-44937688(-)$1	1	57	84	21.9709
).(((((((.............)))))	chr1:27028534-27028784(+)$1	1	212	239	21.5656
(.((((((............)))))).	chr16:68143042-68143255(+)$1	1	16	43	22.9407
.(((.(.(..............).).)	chr7:6741783-6742082(-)$1	1	91	118	22.3799
(((((..((...........))..)).	chr7:64136645-64136875(+)$1	1	119	146	22.3251
((((((..............)))))))	chr5:74817500-74817739(+)$1	1	140	167	21.9115
((((((((............)))))..	chr6:44384027-44384277(+)$1	1	148	175	23.8096
(((.(((((............))))))	chr14:28043407-28043679(-)$1	1	180	207	23.6641
.(((.((((............)))).)	chr4:124198290-124198549(+)$1	1	77	104	22.8286
...(((((............)))))..	chr7:63994727-63994974(-)$1	1	132	159	24.4232
.((..(((..............)))..	chr7:127450248-127450519(+)$1	1	9	36	21.9027
(((.((((............)))))))	chr1:246106326-246106577(-)$1	1	63	90	24.0315
(((((((.............)))))))	chr12:95392953-95393199(-)$1	1	69	96	23.0934
(((((((((...........)))))))	chr15:29217393-29217634(+)$1	1	90	117	24.0850
((..((((.............))))..	chr12:28440308-28440559(+)$1	1	102	129	23.1453
..(((((((...........)))))))	chr3:15832122-15832351(-)$1	1	164	191	24.3261
((.(((................))).)	chr1:176046475-176046736(-)$1	1	151	178	22.5935
)))((((((...........)))))).	chr6:135294317-135294549(-)$1	1	46	73	21.6424
.((((((((............))))))	chr11:47195054-47195294(-)$1	1	152	179	20.5786
((((.((.............)).))))	chr4:68347333-68347559(-)$1	1	68	95	21.1046
....(((((...........)))))..	chr1:27032172-27032429(+)$1	1	185	212	20.5566
.(..(.((.............)).)..	chr18:13026253-13026556(+)$1	1	41	68	23.0852
(((((..((...........))..)))	chr16:23862453-23862709(+)$1	1	176	203	23.7432
.((((................))))..	chr5:53651537-53651772(+)$1	1	159	186	22.2034
(((..((((............))))..	chr1:213365845-213366109(+)$1	1	214	241	23.8169
(((((................))))))	chr13:96659373-96659634(-)$1	1	138	165	23.1627
((((((((............)))))).	chr7:107159821-107160056(-)$1	1	25	52	22.9794
((.(((................))).)	chr5:131094781-131095023(-)$1	1	121	148	22.1395
(..(((((............)))))..	chr22:17124843-17125087(+)$1	1	108	135	24.1065
.(((((..............)))))..	chr4:1386354-1386645(+)$1	1	84	111	22.0145
))..(((((...........)))))((	chr3:185645148-185645386(-)$1	1	152	179	21.2819
.(((..(((............)))..)	chr7:107138564-107138819(-)$1	1	30	57	24.1380
(((..((((...........))))..)	chr8:141204771-141205056(-)$1	1	51	78	23.9890
((..((((.............))))..	chr5:37532993-37533280(+)$1	1	21	48	23.1787
(((((((((............))))))	chr13:96341186-96341442(+)$1	1	191	218	24.1202
(..(((((............)))))..	chr2:37434691-37434919(-)$1	1	54	81	24.2255
(((....((............))..))	chr8:102217052-102217370(-)$1	1	234	261	22.1304
(.((..(((...........)))..))	chr15:58324856-58325142(-)$1	1	7	34	22.7466
(((((.((............)))))))	chr3:101127152-101127422(-)$1	1	101	128	23.8880
((..(((((...........)))))))	chr16:10543183-10543417(+)$1	1	120	147	23.6359
((..(((((...........)))))..	chr16:23863896-23864105(+)$1	1	121	148	24.5012
((((.((((...........)))).))	chr7:155460062-155460314(+)$1	1	67	94	24.1551
)((((((((...........)))))))	chr6:147540647-147540897(+)$1	1	66	93	21.5482
..((((((............)))))).	chr4:13438693-13438932(-)$1	1	122	149	20.0005
.(((.((((...........)))))))	chr3:6579669-6579934(+)$1	1	153	180	23.9168

#PSSM
g : 0.14	d : 0.12	f : 0.10	[ : 0.10	c : 0.10	! : 0.07	e : 0.07	= : 0.05	i : 0.05	: : 0.05	b : 0.05	" : 0.03	% : 0.01	# : 0.01	
d : 0.14	c : 0.14	g : 0.12	f : 0.08	e : 0.08	[ : 0.07	! : 0.07	h : 0.05	= : 0.05	i : 0.05	: : 0.03	b : 0.03	" : 0.01	% : 0.01	a : 0.01	
f : 0.15	g : 0.15	c : 0.12	! : 0.12	d : 0.08	e : 0.07	h : 0.05	= : 0.05	i : 0.05	b : 0.03	[ : 0.03	" : 0.01	% : 0.01	: : 0.01	
g : 0.15	f : 0.14	! : 0.14	c : 0.12	e : 0.10	d : 0.07	[ : 0.05	h : 0.05	= : 0.03	i : 0.03	b : 0.03	% : 0.01	: : 0.01	# : 0.01	
e : 0.21	g : 0.14	d : 0.10	! : 0.10	[ : 0.10	f : 0.10	h : 0.05	c : 0.05	i : 0.03	" : 0.01	b : 0.01	a : 0.01	= : 0.01	# : 0.01	
e : 0.21	d : 0.17	! : 0.10	f : 0.10	y : 0.07	g : 0.07	h : 0.05	[ : 0.05	c : 0.05	" : 0.01	a : 0.01	i : 0.01	b : 0.01	= : 0.01	# : 0.01	
d : 0.17	e : 0.17	y : 0.12	f : 0.10	c : 0.08	h : 0.05	! : 0.05	g : 0.05	b : 0.05	w : 0.03	" : 0.01	[ : 0.01	i : 0.01	= : 0.01	# : 0.01	
d : 0.17	e : 0.17	y : 0.12	b : 0.12	f : 0.10	c : 0.08	h : 0.05	g : 0.03	w : 0.03	v : 0.03	a : 0.01	i : 0.01	= : 0.01	
u : 0.17	v : 0.12	y : 0.12	d : 0.10	e : 0.10	b : 0.08	c : 0.07	w : 0.07	h : 0.05	g : 0.03	i : 0.01	f : 0.01	= : 0.01	
t : 0.36	u : 0.29	v : 0.14	y : 0.12	w : 0.07	
t : 0.36	u : 0.29	v : 0.14	y : 0.12	w : 0.07	
t : 0.36	u : 0.29	v : 0.14	y : 0.12	w : 0.07	
t : 0.36	u : 0.29	v : 0.14	y : 0.12	w : 0.07	
t : 0.36	u : 0.29	v : 0.14	y : 0.12	w : 0.07	
t : 0.36	u : 0.29	v : 0.14	y : 0.12	w : 0.07	
t : 0.36	u : 0.29	v : 0.14	y : 0.12	w : 0.07	
t : 0.36	u : 0.29	v : 0.14	y : 0.12	w : 0.07	
t : 0.36	u : 0.29	v : 0.14	y : 0.12	w : 0.07	
t : 0.36	u : 0.29	v : 0.14	y : 0.12	w : 0.07	
t : 0.36	u : 0.29	v : 0.14	y : 0.12	w : 0.07	
e : 0.17	y : 0.12	u : 0.12	v : 0.10	b : 0.10	d : 0.08	f : 0.08	c : 0.05	g : 0.05	h : 0.03	w : 0.03	i : 0.01	
d : 0.21	e : 0.19	b : 0.14	f : 0.10	g : 0.08	c : 0.07	y : 0.05	h : 0.05	w : 0.03	v : 0.01	i : 0.01	= : 0.01	
d : 0.21	e : 0.21	c : 0.12	g : 0.12	f : 0.10	h : 0.05	2 : 0.05	] : 0.03	b : 0.03	a : 0.01	i : 0.01	= : 0.01	
d : 0.22	e : 0.21	g : 0.12	2 : 0.10	f : 0.10	c : 0.07	h : 0.05	] : 0.05	= : 0.03	i : 0.01	
e : 0.21	d : 0.14	g : 0.14	f : 0.10	2 : 0.08	c : 0.08	h : 0.05	= : 0.05	] : 0.03	i : 0.03	a : 0.03	b : 0.01	
2 : 0.17	g : 0.15	f : 0.14	] : 0.10	d : 0.07	h : 0.07	= : 0.05	3 : 0.05	e : 0.03	c : 0.03	i : 0.03	b : 0.03	6 : 0.01	4 : 0.01	
g : 0.15	2 : 0.14	c : 0.12	d : 0.08	f : 0.08	] : 0.07	h : 0.07	= : 0.05	3 : 0.05	i : 0.03	: : 0.03	b : 0.03	e : 0.01	6 : 0.01	4 : 0.01	

#score	1306.8037367428556
#seq	57
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_CDS_m2_run2.txt

#BEAR
cc[dddd[bb[cccmmmmccc]bb22dddd]	chr19:2202622-2202868(+)$1	246	103	134	12.0515
[ccc[ccc"""cccmmmmccc55555ccccc	chr12:132401765-132402062(+)$1	297	30	61	11.0189
ccggggggg"""bbmmmmbb333ggggggg2	chr11:63884788-63885087(-)$1	299	161	192	12.0172
[bb[ccc####cccmmmmcccccc]bb]hhh	chr11:637278-637537(+)$1	259	83	114	13.2092
a!!cccccceeeeemmmmeeeee]ccc]ccc	chr20:57581420-57581733(-)$1	313	255	286	11.1807
bb!!bb[ccc[cccmmmmccc]ccc]bb22b	chr19:3543069-3543335(-)$1	266	42	73	12.3758
c[ggggggg!!cccmmmmccc]ggggggg]c	chr14:104165104-104165389(+)$1	285	175	206	14.4536
"dddd!!ccc[cccmmmmccc]ccc]dddd4	chr8:145016490-145016754(-)$1	264	41	72	13.0088
$$$$ffffff[cccmmmmccc]ffffff444	chr7:923924-924176(+)$1	252	19	50	13.2883
$$$$ffffff[cccmmmmccc]ffffffccc	chr20:32251201-32251446(-)$1	245	42	73	13.0545
eeee[eeeee[cccmmmmccc]eeeee]eee	chr7:923727-923961(+)$1	234	116	147	12.2493
c[ddddbb!!ddddmmmmdddd]bb]ddddc	chr20:31172308-31172546(-)$1	238	92	123	10.3749
ee"""bb####cccmmmmccc22bb333eee	chr17:79657055-79657314(+)$1	259	151	182	13.1732
!dddd[a"""ddddmmmmdddd]a]dddd22	chr15:23086204-23086501(-)$1	297	42	73	11.4300
fffff[dddd[cccmmmmccc]ddddfffff	chr16:4431602-4431878(-)$1	276	2	33	11.4482
ggggggg!!bbcccmmmmccc]bb22ggggg	chr16:31724701-31724982(+)$1	281	205	236	12.7791
ccc[ccc!!bb!!ammmma22bb333ccccc	chr11:63883596-63883850(-)$1	254	196	227	11.0227
$$$$ffffff[cccmmmmccc]ffffff444	chr7:923820-924052(+)$1	232	123	154	13.2883
bb!!eeeee!!cccmmmmccceeeee]bb]e	chr2:242839124-242839440(+)$1	316	39	70	12.2902
!bb!!eeeee[cccmmmmccc]eeeee22bb	chr12:133295286-133295547(+)$1	261	214	245	12.7030
b"""ccc"""ddddmmmmdddd333ccc333	chr7:1886975-1887201(-)$1	226	32	63	13.9922
hhhhhhhhh!!cccmmmmccc]hhhhhhhh8	chr7:143084714-143084978(+)$1	264	9	40	10.7645
g:bbffffff[cccmmmmccc333ffffff]	chr19:2425975-2426264(-)$1	289	241	272	12.3270
[a[dddd$$$$$ccclllcccdddd]a]iii	chr5:154135352-154135593(+)$1	241	176	207	9.7003
:ccc[ccc[ccc[ammmma]cccccc]cccF	chr1:155658041-155658333(-)$1	292	227	258	10.8513
ddd[ccc####cccnnnnnccc4444ccc]d	chr19:1468752-1469027(-)$1	275	129	160	10.0933
ccc[eeeee[ddddmmmmdddd]eeeee333	chr8:145107123-145107386(-)$1	263	96	127	11.6955
eeee[ccc[eeeeemmmmeeeee]ccc]eee	chr16:85392784-85393080(+)$1	296	11	42	10.2404
"""eeeee[ccc[ammmma]ccc22eeeeee	chr5:154135495-154135744(+)$1	249	151	182	11.9952
b[bb!!a!!bb[ccclllccc]bb22a333b	chr22:37622737-37623078(-)$1	341	145	176	10.1001
###a[ccc"""cccmmmmccc333ccc]a55	chr19:10407078-10407354(+)$1	276	121	152	14.6220
eee[ccc"""ddddmmmmdddd333ccc]ee	chr2:172379715-172379968(+)$1	253	50	81	12.6129
###bbccc[eeeeemmmmeeeee22ccc]bb	chrX:152957466-152957750(+)$1	284	155	186	10.6641
:cccgggggggcccmmmmccc333ggggggg	chr21:45562978-45563236(+)$1	258	13	44	13.2070
fffff[dddd[cccmmmmccc]ddddfffff	chr16:4431716-4431974(-)$1	258	98	129	11.4482
a[ffffff"""cccmmmmccc]ffffff]a]	chr16:89643723-89644054(+)$1	331	201	232	13.9521
dccc"""bb"""bbmmmmbb333bb22ccc]	chr19:49964841-49965122(+)$1	281	173	204	10.3988
=cccgggggggcccmmmmccc22ggggggg2	chr19:1468583-1468863(-)$1	280	168	199	13.2802
$$$$ffffff[ccclllcccffffff22a]f	chr17:79385262-79385502(+)$1	240	139	170	9.6620
hbb[dddda[ddddmmmmdddd]a]ddddbb	chr1:1689857-1690114(-)$1	257	107	138	10.2587
$$$eeeee[ccc[ammmma]ccc]eeeee]i	chr19:18547792-18548093(-)$1	301	219	250	11.6745
fffff"""bb[cccmmmmccc333bb22fff	chr1:228329268-228329579(+)$1	311	103	134	12.1947
d!!bb!!gggggggmmmmgggggggbb22dd	chr7:100027919-100028175(+)$1	256	38	69	10.2833
hhhhh[a####cccmmmmcccahhhhhhhh:	chr19:36523007-36523336(+)$1	329	119	150	10.9434
i[bb[ffffffcccmmmmccc]ffffff]bb	chr22:50016886-50017143(-)$1	257	35	66	12.0730
"""ggggggg[ccclllcccggggggg22bb	chr19:1416336-1416617(+)$1	281	16	47	11.0679
####dddda[ddddmmmmdddd22a]dddd4	chr19:1104622-1104879(+)$1	257	200	231	11.7868
!bb[a[ccc[eeeeellleeeee]ccc]a33	chr21:45223551-45223822(+)$1	271	123	154	9.1791
[bb[a[bb!!ddddmmmmdddd22bb22a]b	chr4:891781-892047(-)$1	266	186	217	11.1632
:ggggggg"""cccmmmmccc4444gggggg	chr1:228329203-228329462(+)$1	259	16	47	13.9073
e!!eeeee[a[cccmmmmccc]a22eeeee5	chr22:19704745-19705029(+)$1	284	201	232	13.2026
cc[eeeee!!ddddmmmmdddd]eeeeeccc	chr16:89367237-89367517(-)$1	280	14	45	11.5990

#otherMatches

#Seq PSSM
UGGUCCUGAGGUGGAUCACCAGCUGAAGGAG	chr19:2202622-2202868(+)$1	246	103	134	12.0515
ggaggcugugggacgggggucgggUUCGGCU	chr12:132401765-132402062(+)$1	297	30	61	11.0189
GCCGUGGUCUUGGCAGCCGCAUUGGCCACGC	chr11:63884788-63885087(-)$1	299	161	192	12.0172
gcgggggcaucugcgggggcaucugcggggC	chr11:637278-637537(+)$1	259	83	114	13.2092
GCAAUGUGGAUGGUGUCAACUAUGCCAGCAU	chr20:57581420-57581733(-)$1	313	255	286	11.1807
GCGUGUGGCCUGCCUGAUGGCUGGUGGCCAG	chr19:3543069-3543335(-)$1	266	42	73	12.3758
UCAGCCAGCAGUCUCACCAGGAGCUGGUUAG	chr14:104165104-104165389(+)$1	285	175	206	14.4536
GGCCGAACCAGGGCUCCGGCCGUGGCCGGCA	chr8:145016490-145016754(-)$1	264	41	72	13.0088
UGAGUCAGUCAUGUCCCUGCAGGACUGGAAC	chr7:923924-924176(+)$1	252	19	50	13.2883
CAAUCCGUUGCCCAGCGUUGGCCAGCGGCUG	chr20:32251201-32251446(-)$1	245	42	73	13.0545
CGGUUCUGCCCGUGGCCCCACUGGCGGCAUC	chr7:923727-923961(+)$1	234	116	147	12.2493
UGCGCUCCAAGGGCUUCCGCCUGGGCAGCGG	chr20:31172308-31172546(-)$1	238	92	123	10.3749
UCCAGGGCACGUCUUUCCAGAAUUCAAAGAG	chr17:79657055-79657314(+)$1	259	151	182	13.1732
GCGGGGCGCGGCGCGCAGGCGCAGGCUCGGA	chr15:23086204-23086501(-)$1	297	42	73	11.4300
UUGGGCGGGAAGUGGCAGCGCGUCUCCUCAG	chr16:4431602-4431878(-)$1	276	2	33	11.4482
GGGCCGGCAGCCGGGACCCCGCGCGUCCGGU	chr16:31724701-31724982(+)$1	281	205	236	12.7791
GCGGCGACAGCGACCCCAGGAGUGAAUCGUG	chr11:63883596-63883850(-)$1	254	196	227	11.0227
UGAGUCAGUCAUGUCCCUGCAGGACUGGAAC	chr7:923820-924052(+)$1	232	123	154	13.2883
GGCUGUCAGUUUCCUCCUGGGUUGACUCCUU	chr2:242839124-242839440(+)$1	316	39	70	12.2902
UGCUCGGGCUGCUCCCUCGGGGGGCCCUUGU	chr12:133295286-133295547(+)$1	261	214	245	12.7030
GUCUCUCCCAUGGAACCUUCCAGCUGAGCUU	chr7:1886975-1887201(-)$1	226	32	63	13.9922
UGAGUGAGGUAGUUCAGAGGCCCCUCACUCG	chr7:143084714-143084978(+)$1	264	9	40	10.7645
GAAGUGGGGCCGGCCACAGCCAUAGCCCCAG	chr19:2425975-2426264(-)$1	289	241	272	12.3270
AGGAGCGCGAGAGCCCGCGGCCGCUGCAGCU	chr5:154135352-154135593(+)$1	241	176	207	9.7003
UGGGUUCGCUUUGCGAGGGGAAACGAUCCCA	chr1:155658041-155658333(-)$1	292	227	258	10.8513
GGCGGGCGGUGUGGCGCUUCUGGGGGGCUGG	chr19:1468752-1469027(-)$1	275	129	160	10.0933
GGGAGGGCGAGGUGGGGACGCCCUGCCCCAG	chr8:145107123-145107386(-)$1	263	96	127	11.6955
GGCAGAGGAGGACACCAGUGUUCCCCUGUGC	chr16:85392784-85393080(+)$1	296	11	42	10.2404
cgcggggcgccgggACUUCGUGGAAGCCCCC	chr5:154135495-154135744(+)$1	249	151	182	11.9952
UGGAAGGGGUUGUAUGGCAUAGGAGACAUGU	chr22:37622737-37623078(-)$1	341	145	176	10.1001
gcaggcgcggagggcggacccgaggcggcgg	chr19:10407078-10407354(+)$1	276	121	152	14.6220
GGGGAAAAGAUUGCCGGAGCGAGAAUUUGCC	chr2:172379715-172379968(+)$1	253	50	81	12.6129
CCAGGCACACCUGUGGCAACGGGAGGUGACC	chrX:152957466-152957750(+)$1	284	155	186	10.6641
GCUCCCGUGGCAGGGCAGCCUGGGGUCAUGG	chr21:45562978-45563236(+)$1	258	13	44	13.2070
UUGGGCGGGAAGUGGCAGCGCGUCUCCUCAG	chr16:4431716-4431974(-)$1	258	98	129	11.4482
CGGCUCACAGGUGCACUUGCAGGUGGGCAGA	chr16:89643723-89644054(+)$1	331	201	232	13.9521
CCAGCCUGGAAUCCGGAAGGUGGCCUUCUGC	chr19:49964841-49965122(+)$1	281	173	204	10.3988
GGCUGGGGACGUAGAUCACUGUUCGUCCCCG	chr19:1468583-1468863(-)$1	280	168	199	13.2802
AAGACGGGUGAGCUGCUGGCCACCCGAAGAG	chr17:79385262-79385502(+)$1	240	139	170	9.6620
AGGCUUCUAGUGUGGGCGCACAGUCAGGACC	chr1:1689857-1690114(-)$1	257	107	138	10.2587
GAGCCUGGGCCUGGACGCCGAGGGCCAGGAG	chr19:18547792-18548093(-)$1	301	219	250	11.6745
AGCAGGGAGUGCCUUUCCAGGAAAGCGGCUG	chr1:228329268-228329579(+)$1	311	103	134	12.1947
GAGCCGCUCCCCCGGACGUGGGGGAGGAGCG	chr7:100027919-100028175(+)$1	256	38	69	10.2833
GGUGCACAACAGGCUUCUGCCGGCGCUCCUG	chr19:36523007-36523336(+)$1	329	119	150	10.9434
ggcugggguggcuccucagagauugcccaag	chr22:50016886-50017143(-)$1	257	35	66	12.0730
GUUUUGCUCUCUGGAGACCAAGGGUGAUGAU	chr19:1416336-1416617(+)$1	281	16	47	11.0679
GAAGGCCCCAGCGUGCAGGCGCAGGAGGGCG	chr19:1104622-1104879(+)$1	257	200	231	11.7868
GGCAGGGAGGGAGGCCAGGCCUCGCUUGCAC	chr21:45223551-45223822(+)$1	271	123	154	9.1791
ACAGCUGGAGCGCCCAGAGGCGAGCCCUGGU	chr4:891781-892047(-)$1	266	186	217	11.1632
ACGAGAGGCCAGGCGGGGGCUGAAUUCUCUC	chr1:228329203-228329462(+)$1	259	16	47	13.9073
CCAAUCCUGUGGGUCAGAGCUGGUGAGGAUG	chr22:19704745-19705029(+)$1	284	201	232	13.2026
AGUCAACCAGCGAAUGUUUUUGAGGUUGCUG	chr16:89367237-89367517(-)$1	280	14	45	11.5990

#DB
((.((((.((.(((....))).))..)))).	chr19:2202622-2202868(+)$1	1	103	134	12.0515
.(((.(((...(((....))).....)))))	chr12:132401765-132402062(+)$1	1	30	61	11.0189
(((((((((...((....))...))))))).	chr11:63884788-63885087(-)$1	1	161	192	12.0172
.((.(((....(((....)))))).)).)))	chr11:637278-637537(+)$1	1	83	114	13.2092
(..(((((((((((....))))).))).)))	chr20:57581420-57581733(-)$1	1	255	286	11.1807
((..((.(((.(((....))).))).))..)	chr19:3543069-3543335(-)$1	1	42	73	12.3758
(.(((((((..(((....))).))))))).)	chr14:104165104-104165389(+)$1	1	175	206	14.4536
.((((..(((.(((....))).))).)))).	chr8:145016490-145016754(-)$1	1	41	72	13.0088
....((((((.(((....))).))))))...	chr7:923924-924176(+)$1	1	19	50	13.2883
....((((((.(((....))).)))))))))	chr20:32251201-32251446(-)$1	1	42	73	13.0545
((((.(((((.(((....))).))))).)))	chr7:923727-923961(+)$1	1	116	147	12.2493
(.((((((..((((....)))).)).)))))	chr20:31172308-31172546(-)$1	1	92	123	10.3749
((...((....(((....)))..))...)))	chr17:79657055-79657314(+)$1	1	151	182	13.1732
.((((.(...((((....)))).).))))..	chr15:23086204-23086501(-)$1	1	42	73	11.4300
(((((.((((.(((....))).)))))))))	chr16:4431602-4431878(-)$1	1	2	33	11.4482
(((((((..(((((....))).))..)))))	chr16:31724701-31724982(+)$1	1	205	236	12.7791
(((.(((..((..(....)..))...)))))	chr11:63883596-63883850(-)$1	1	196	227	11.0227
....((((((.(((....))).))))))...	chr7:923820-924052(+)$1	1	123	154	13.2883
((..(((((..(((....)))))))).)).)	chr2:242839124-242839440(+)$1	1	39	70	12.2902
.((..(((((.(((....))).)))))..))	chr12:133295286-133295547(+)$1	1	214	245	12.7030
(...(((...((((....))))...)))...	chr7:1886975-1887201(-)$1	1	32	63	13.9922
(((((((((..(((....))).)))))))).	chr7:143084714-143084978(+)$1	1	9	40	10.7645
).((((((((.(((....)))...)))))).	chr19:2425975-2426264(-)$1	1	241	272	12.3270
.(.((((.....(((...))))))).).)))	chr5:154135352-154135593(+)$1	1	176	207	9.7003
.(((.(((.(((.(....).)))))).))))	chr1:155658041-155658333(-)$1	1	227	258	10.8513
(((.(((....(((.....)))....))).)	chr19:1468752-1469027(-)$1	1	129	160	10.0933
(((.(((((.((((....)))).)))))...	chr8:145107123-145107386(-)$1	1	96	127	11.6955
((((.(((.(((((....))))).))).)))	chr16:85392784-85393080(+)$1	1	11	42	10.2404
...(((((.(((.(....).)))..))))))	chr5:154135495-154135744(+)$1	1	151	182	11.9952
(.((..(..((.(((...))).))..)...)	chr22:37622737-37623078(-)$1	1	145	176	10.1001
...(.(((...(((....)))...))).)..	chr19:10407078-10407354(+)$1	1	121	152	14.6220
(((.(((...((((....))))...))).))	chr2:172379715-172379968(+)$1	1	50	81	12.6129
...(((((.(((((....)))))..))).))	chrX:152957466-152957750(+)$1	1	155	186	10.6641
.(((((((((((((....)))...)))))))	chr21:45562978-45563236(+)$1	1	13	44	13.2070
(((((.((((.(((....))).)))))))))	chr16:4431716-4431974(-)$1	1	98	129	11.4482
(.((((((...(((....))).)))))).).	chr16:89643723-89644054(+)$1	1	201	232	13.9521
((((...((...((....))...))..))).	chr19:49964841-49965122(+)$1	1	173	204	10.3988
((((((((((((((....)))..))))))).	chr19:1468583-1468863(-)$1	1	168	199	13.2802
....((((((.(((...)))))))))..).)	chr17:79385262-79385502(+)$1	1	139	170	9.6620
)((.(((((.((((....)))).).))))))	chr1:1689857-1690114(-)$1	1	107	138	10.2587
...(((((.(((.(....).))).))))).)	chr19:18547792-18548093(-)$1	1	219	250	11.6745
(((((...((.(((....)))...))..)))	chr1:228329268-228329579(+)$1	1	103	134	12.1947
(..((..(((((((....)))))))))..))	chr7:100027919-100028175(+)$1	1	38	69	10.2833
(((((.(....(((....)))))))))))).	chr19:36523007-36523336(+)$1	1	119	150	10.9434
(.((.(((((((((....))).)))))).))	chr22:50016886-50017143(-)$1	1	35	66	12.0730
...(((((((.(((...))))))))))..))	chr19:1416336-1416617(+)$1	1	16	47	11.0679
....(((((.((((....))))..).)))).	chr19:1104622-1104879(+)$1	1	200	231	11.7868
.((.(.(((.(((((...))))).))).)..	chr21:45223551-45223822(+)$1	1	123	154	9.1791
.((.(.((..((((....))))..))..).)	chr4:891781-892047(-)$1	1	186	217	11.1632
.(((((((...(((....)))....))))))	chr1:228329203-228329462(+)$1	1	16	47	13.9073
(..(((((.(.(((....))).)..))))).	chr22:19704745-19705029(+)$1	1	201	232	13.2026
((.(((((..((((....)))).))))))))	chr16:89367237-89367517(-)$1	1	14	45	11.5990

#PSSM
c : 0.13	$ : 0.09	e : 0.09	[ : 0.07	b : 0.07	" : 0.05	! : 0.05	f : 0.05	h : 0.05	: : 0.05	d : 0.05	# : 0.05	a : 0.03	g : 0.03	= : 0.01	i : 0.01	
c : 0.19	b : 0.13	[ : 0.09	$ : 0.09	e : 0.07	! : 0.05	d : 0.05	f : 0.05	" : 0.05	# : 0.05	g : 0.03	h : 0.03	: : 0.01	a : 0.01	
b : 0.15	c : 0.13	! : 0.09	$ : 0.09	g : 0.07	d : 0.07	" : 0.07	f : 0.07	[ : 0.05	e : 0.05	# : 0.05	h : 0.03	
[ : 0.15	c : 0.11	e : 0.11	d : 0.09	g : 0.09	b : 0.09	$ : 0.07	f : 0.07	! : 0.05	" : 0.03	h : 0.03	a : 0.01	# : 0.01	
f : 0.17	d : 0.13	g : 0.13	[ : 0.11	c : 0.11	e : 0.11	b : 0.05	" : 0.03	! : 0.03	h : 0.03	a : 0.03	
c : 0.21	e : 0.15	g : 0.13	f : 0.13	[ : 0.11	d : 0.09	! : 0.05	b : 0.03	" : 0.03	h : 0.01	
c : 0.23	e : 0.15	g : 0.13	f : 0.13	d : 0.11	b : 0.05	a : 0.05	! : 0.03	" : 0.03	[ : 0.01	h : 0.01	
c : 0.17	e : 0.15	g : 0.13	f : 0.13	# : 0.07	" : 0.07	d : 0.07	b : 0.05	! : 0.05	[ : 0.01	h : 0.01	$ : 0.01	
" : 0.13	g : 0.11	f : 0.11	! : 0.11	[ : 0.11	# : 0.07	c : 0.07	e : 0.07	b : 0.05	d : 0.03	a : 0.03	h : 0.01	$ : 0.01	
" : 0.17	! : 0.11	f : 0.11	b : 0.09	e : 0.09	c : 0.09	# : 0.07	[ : 0.07	g : 0.07	d : 0.03	$ : 0.01	a : 0.01	
[ : 0.28	d : 0.17	" : 0.11	# : 0.07	e : 0.07	! : 0.05	b : 0.05	c : 0.05	g : 0.05	$ : 0.01	f : 0.01	
c : 0.63	d : 0.17	e : 0.07	" : 0.03	! : 0.01	$ : 0.01	[ : 0.01	g : 0.01	
c : 0.61	d : 0.17	e : 0.07	[ : 0.05	b : 0.03	! : 0.01	g : 0.01	
c : 0.61	d : 0.17	e : 0.07	a : 0.07	b : 0.03	g : 0.01	
m : 0.88	c : 0.03	l : 0.03	n : 0.01	e : 0.01	
m : 0.88	l : 0.09	n : 0.01	
m : 0.88	l : 0.09	n : 0.01	
m : 0.88	l : 0.05	c : 0.03	n : 0.01	
c : 0.59	d : 0.17	e : 0.07	a : 0.07	b : 0.03	n : 0.01	g : 0.01	
c : 0.61	d : 0.17	e : 0.07	] : 0.05	b : 0.03	2 : 0.01	g : 0.01	
c : 0.63	d : 0.17	e : 0.07	3 : 0.03	g : 0.03	2 : 0.01	f : 0.01	
] : 0.32	d : 0.19	3 : 0.11	c : 0.09	e : 0.09	2 : 0.03	g : 0.03	5 : 0.01	b : 0.01	f : 0.01	a : 0.01	4 : 0.01	
3 : 0.15	e : 0.13	c : 0.11	f : 0.11	] : 0.09	b : 0.07	2 : 0.07	g : 0.05	d : 0.05	h : 0.03	4 : 0.03	5 : 0.01	a : 0.01	
3 : 0.13	b : 0.11	f : 0.11	g : 0.09	e : 0.09	2 : 0.09	c : 0.07	] : 0.07	d : 0.05	a : 0.03	h : 0.03	4 : 0.03	5 : 0.01	
c : 0.13	f : 0.13	2 : 0.11	g : 0.11	e : 0.11	b : 0.09	] : 0.05	d : 0.05	3 : 0.05	h : 0.03	4 : 0.03	5 : 0.01	a : 0.01	
c : 0.15	e : 0.15	f : 0.13	g : 0.11	] : 0.09	2 : 0.07	b : 0.07	d : 0.07	3 : 0.03	h : 0.03	5 : 0.01	4 : 0.01	
c : 0.19	f : 0.15	g : 0.13	e : 0.13	d : 0.11	2 : 0.07	b : 0.05	] : 0.03	h : 0.03	a : 0.03	3 : 0.01	
c : 0.15	f : 0.15	] : 0.13	d : 0.11	g : 0.11	2 : 0.11	e : 0.09	b : 0.03	3 : 0.03	h : 0.03	
c : 0.15	d : 0.11	g : 0.11	e : 0.11	2 : 0.07	f : 0.07	a : 0.07	] : 0.07	h : 0.05	3 : 0.05	4 : 0.03	b : 0.01	i : 0.01	
c : 0.13	] : 0.11	e : 0.11	d : 0.09	g : 0.09	b : 0.09	f : 0.07	3 : 0.07	h : 0.05	2 : 0.03	4 : 0.03	i : 0.01	5 : 0.01	a : 0.01	
b : 0.15	c : 0.13	e : 0.11	] : 0.07	4 : 0.07	f : 0.07	2 : 0.05	g : 0.05	3 : 0.05	i : 0.03	d : 0.03	5 : 0.03	h : 0.01	8 : 0.01	F : 0.01	: : 0.01	

#score	617.3608063263349
#seq	52
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_CDS_m1_run2.txt

#BEAR
[ddddyyyyyyyyyyyyyyyyd	chrX:20194480-20194740(-)$1	260	146	168	20.0839
:ddddtttttttttttddddGG	chr2:20196885-20197164(-)$1	279	24	46	20.6255
[a[bbuuuuuuuuuuuubb]a]	chr17:27064432-27064725(+)$1	293	57	79	21.8972
eeeeevvvvvvvvvvvvveeee	chr1:226111324-226111670(-)$1	346	72	94	22.6261
[ddddvvvvvvvvvvvvvdddd	chr4:152025327-152025580(+)$1	253	71	93	22.4895
fffffwwwwwwwwwwwwwwfff	chr12:42707391-42707717(-)$1	326	45	67	20.6912
fffvvvvvvvvvvvvvffffff	chr8:110351388-110351759(+)$1	371	297	319	20.3650
gggggvvvvvvvvvvvvvgggg	chr16:88724985-88725227(-)$1	242	156	178	22.3882
=====wwwwwwwwwwwwww===	chr7:44113864-44114096(-)$1	232	25	47	20.9721
eeeeewwwwwwwwwwwwwweee	chr17:17721462-17721674(-)$1	212	10	32	21.1350
bbccctttttttttttccc]bb	chr16:67984727-67984965(-)$1	238	13	35	21.6389
fffffuuuuuuuuuuuufffff	chr20:419363-419627(-)$1	264	124	146	22.3720
eeeeeuuuuuuuuuuuueeeee	chr11:64535436-64535702(-)$1	266	14	36	22.9034
fffffwwwwwwwwwwwwwwfff	chr17:36934445-36934744(-)$1	299	14	36	20.6912
ddccctttttttttttccc]dd	chr2:207025983-207026222(+)$1	239	64	86	22.4763
a[cccvvvvvvvvvvvvvccca	chr2:86691018-86691308(+)$1	290	188	210	22.2684
gggggyyyyyyyyyyyyyyyyg	chr2:28616587-28616802(+)$1	215	173	195	19.9419
eeeeeuuuuuuuuuuuueeeee	chr1:46488539-46488787(+)$1	248	117	139	22.9034
cddddtttttttttttdddd]c	chr1:169093982-169094277(+)$1	295	136	158	22.6480
"ddddtttttttttttdddd]c	chr7:135106927-135107225(-)$1	298	18	40	22.6968
eeeeeuuuuuuuuuuuueeeee	chr11:16766042-16766372(+)$1	330	145	167	22.9034
FFcccuuuuuuuuuuuuccc::	chr6:53156613-53156868(-)$1	255	132	154	20.3639
eeccctttttttttttccc]ee	chr6:43196835-43197101(-)$1	266	217	239	22.8494
""cccuuuuuuuuuuuuccc44	chr2:99980703-99980985(+)$1	282	150	172	22.6646
###bbtttttttttttbb4444	chr2:242437657-242437925(-)$1	268	204	226	21.3434
dddbbvvvvvvvvvvvvvbb]d	chr7:26242453-26242747(+)$1	294	101	123	21.3504
ffffftttttttttttffffff	chr7:40118195-40118453(+)$1	258	160	182	22.1636
ggggguuuuuuuuuuuuggggg	chr6:33255637-33255898(-)$1	261	151	173	22.6365
=====ttttttttttt======	chr3:23959195-23959469(+)$1	274	45	67	22.5833
fffffuuuuuuuuuuuufffff	chr19:1089744-1089988(-)$1	244	78	100	22.3720
gggggtttttttttttgggggg	chr10:5139627-5139892(+)$1	265	121	143	22.3653
ffffftttttttttttffffff	chr2:62112016-62112325(-)$1	309	20	42	22.1636
$ddddtttttttttttdddd55	chr16:70590670-70590915(+)$1	245	53	75	20.8627
=[cccyyyyyyyyyyyyyyyyc	chr17:65144539-65144786(-)$1	247	186	208	19.9511
eeeeevvvvvvvvvvvvveeee	chr1:109238150-109238460(+)$1	310	25	47	22.6261
!ddddvvvvvvvvvvvvvdddd	chr17:66520931-66521228(+)$1	297	204	226	22.4450
eeeeewwwwwwwwwwwwwweee	chr14:35872850-35873105(-)$1	255	74	96	21.1350
%ddddtttttttttttdddd55	chr5:139006165-139006477(+)$1	312	16	38	20.4441
Ecccuuuuuuuuuuuucccfff	chr11:68180994-68181265(+)$1	271	6	28	20.7662
:dddduuuuuuuuuuuudddd:	chr19:18956821-18957066(+)$1	245	46	68	20.9441
gggggwwwwwwwwwwwwwwggg	chr16:88599242-88599482(+)$1	240	117	139	20.9264
eeeeeuuuuuuuuuuuueeeee	chr20:10627446-10627707(-)$1	261	217	239	22.9034
eeeeettttttttttteeeee:	chr6:30690573-30690801(+)$1	228	43	65	21.8878
[cccuuuuuuuuuuuuccc]a:	chr22:39145735-39146051(-)$1	316	65	87	20.9553
gggggtttttttttttgggggg	chr16:28836578-28836820(+)$1	242	197	219	22.3653
:ddddtttttttttttddddFF	chr14:35872757-35872997(-)$1	240	193	215	21.0399
cc[bbtttttttttttbb]ccc	chr3:15093847-15094073(-)$1	226	81	103	21.6851
bddddvvvvvvvvvvvvvdddd	chr17:80765396-80765681(+)$1	285	210	232	22.0846
fffffuuuuuuuuuuuufffff	chr4:6290587-6290861(+)$1	274	87	109	22.3720
gggggvvvvvvvvvvvvvgggg	chr19:1011083-1011330(-)$1	247	168	190	22.3882
cccwwwwwwwwwwwwwwcccff	chr3:52830326-52830608(+)$1	282	197	219	20.2327
cddddtttttttttttdddd22	chr19:46375139-46375466(+)$1	327	203	225	22.1481
ffffftttttttttttffffff	chr9:35060402-35060673(-)$1	271	167	189	22.1636
dddddtttttttttttdddd]d	chr2:27463644-27463922(+)$1	278	25	47	22.4636
eeeeettttttttttteeeee:	chr2:201719678-201719928(-)$1	250	79	101	21.8878
eeeeettttttttttteeeee:	chr2:102441654-102441882(+)$1	228	203	225	21.8878
[ddddtttttttttttdddd]f	chr9:139328341-139328605(-)$1	264	228	250	22.8370
dd[bbtttttttttttbb]ddd	chr6:114279796-114280111(-)$1	315	273	295	21.5467
[ddddvvvvvvvvvvvvvdddd	chr9:127255295-127255536(-)$1	241	161	183	22.4895
ffffftttttttttttffffff	chr9:130658465-130658777(-)$1	312	61	83	22.1636
[dddduuuuuuuuuuuudddd]	chr19:4366350-4366606(-)$1	256	185	207	22.8768
=====vvvvvvvvvvvvv====	chr10:103573207-103573475(-)$1	268	15	37	22.4650
[ddddtttttttttttdddd]b	chr19:1090768-1091013(-)$1	245	205	227	22.6078
eeeeeyyyyyyyyyyyyyyyye	chr19:649588-649827(-)$1	239	82	104	20.0901
ddddwwwwwwwwwwwwwwdddd	chr2:166773756-166774026(-)$1	270	98	120	20.5842
eeeeettttttttttteeeee]	chr12:125262992-125263282(-)$1	290	17	39	22.7340
eeeeettttttttttteeeeeg	chr3:9512026-9512279(+)$1	253	96	118	22.7280
ff[bbuuuuuuuuuuuubbfff	chr17:37871854-37872136(+)$1	282	120	142	21.8539
fffffuuuuuuuuuuuufffff	chr1:110555360-110555653(+)$1	293	112	134	22.3720
[cccuuuuuuuuuuuuccca]e	chr1:35915818-35916059(-)$1	241	182	204	21.8416
cc[bbtttttttttttbb]ccc	chr17:44110303-44110563(-)$1	260	213	235	21.6851
eeeeeuuuuuuuuuuuueeeee	chr2:86357759-86358000(+)$1	241	199	221	22.9034

#otherMatches

#Seq PSSM
AGAAAUUAAAAGACAUUCAUUU	chrX:20194480-20194740(-)$1	260	146	168	20.0839
ACUGACUACUACAUUCUCAGCA	chr2:20196885-20197164(-)$1	279	24	46	20.6255
UCCUCAACCUCCACACCGACGU	chr17:27064432-27064725(+)$1	293	57	79	21.8972
UCCUCGUAGAGGGUUGAGGGGG	chr1:226111324-226111670(-)$1	346	72	94	22.6261
GUUAGAAAAGUAAAAAUGCUGA	chr4:152025327-152025580(+)$1	253	71	93	22.4895
UGUAUAUUAUUCUUACUAAAUA	chr12:42707391-42707717(-)$1	326	45	67	20.6912
UUAUUUUAAGGUAUAUUGAGUA	chr8:110351388-110351759(+)$1	371	297	319	20.3650
UGCACCAGGACCAGGUAUGUGU	chr16:88724985-88725227(-)$1	242	156	178	22.3882
GCAGCAGGUGGUGGAGGAAGCU	chr7:44113864-44114096(-)$1	232	25	47	20.9721
AAGGCCAUCGACUACAUUCGCU	chr17:17721462-17721674(-)$1	212	10	32	21.1350
GGCUCAAACCGCUCUGGGGACC	chr16:67984727-67984965(-)$1	238	13	35	21.6389
CGUCUCUUUCCCCUGCAGGACG	chr20:419363-419627(-)$1	264	124	146	22.3720
CUGGGUGAAGCACCUGUCCCAG	chr11:64535436-64535702(-)$1	266	14	36	22.9034
GACUCUAACAAGCCUACUUGAG	chr17:36934445-36934744(-)$1	299	14	36	20.6912
UUGAAUUUAAAUGUUUUUCAAG	chr2:207025983-207026222(+)$1	239	64	86	22.4763
UACCUACAACAGUUUUUAAGGA	chr2:86691018-86691308(+)$1	290	188	210	22.2684
UUGCUUUCUUUUCUUUUUCUUG	chr2:28616587-28616802(+)$1	215	173	195	19.9419
GCUCCUACCCCAUUCCUGGAGC	chr1:46488539-46488787(+)$1	248	117	139	22.9034
UAGGAUUAACACAGAUUCCUCA	chr1:169093982-169094277(+)$1	295	136	158	22.6480
AAUGUAACAGAUAACCACAUAC	chr7:135106927-135107225(-)$1	298	18	40	22.6968
AAGAGAGAAAACAAAAGUUCUU	chr11:16766042-16766372(+)$1	330	145	167	22.9034
UCUGGACAAUUAUAUACCCACA	chr6:53156613-53156868(-)$1	255	132	154	20.3639
GCCCGCCCUCCUACCCCGGUGC	chr6:43196835-43197101(-)$1	266	217	239	22.8494
GAAGCUACUCUUAAACUGCUAC	chr2:99980703-99980985(+)$1	282	150	172	22.6646
UUCCCCCCUACCAUCCGGCCGA	chr2:242437657-242437925(-)$1	268	204	226	21.3434
AUGCAAACUUACCUUAACUGUC	chr7:26242453-26242747(+)$1	294	101	123	21.3504
CUUGCCUUGGAUCCUAGUAAGC	chr7:40118195-40118453(+)$1	258	160	182	22.1636
UGGAAGGUAAGGUUGAAUUCUA	chr6:33255637-33255898(-)$1	261	151	173	22.6365
GGCGGUUUCCUUGUUUUUGUUG	chr3:23959195-23959469(+)$1	274	45	67	22.5833
GCGCUACUUUGGGAUAAAGCGU	chr19:1089744-1089988(-)$1	244	78	100	22.3720
AGUUUGUAUGAGCAUAAAAUUG	chr10:5139627-5139892(+)$1	265	121	143	22.3653
caggaguuugaggccauccugg	chr2:62112016-62112325(-)$1	309	20	42	22.1636
CUGGGUAUGUUUUUUUCCUAAA	chr16:70590670-70590915(+)$1	245	53	75	20.8627
AGAUGAUUCCCAACACACUUAC	chr17:65144539-65144786(-)$1	247	186	208	19.9511
UUUACACACUUAAUAUCAGUAA	chr1:109238150-109238460(+)$1	310	25	47	22.6261
AAAGCCAAUGUAUUGAUCGCUU	chr17:66520931-66521228(+)$1	297	204	226	22.4450
UGGGGUUUUUCCCUCUCUUCCC	chr14:35872850-35873105(-)$1	255	74	96	21.1350
AUUGAAUUAAUCCUUAUCAGAA	chr5:139006165-139006477(+)$1	312	16	38	20.4441
UGGAUCUUGCUGGUUUUCCAAG	chr11:68180994-68181265(+)$1	271	6	28	20.7662
ACUUCGAGGAAGAUGAAGAAGA	chr19:18956821-18957066(+)$1	245	46	68	20.9441
GGGCCACCCCUGCCCCUUAGGC	chr16:88599242-88599482(+)$1	240	117	139	20.9264
Guuuuuuuuuuuuuuuugagac	chr20:10627446-10627707(-)$1	261	217	239	22.9034
UGCUGUCUCCCAUUUCCAGUAU	chr6:30690573-30690801(+)$1	228	43	65	21.8878
GCAGGACAGAGGCAUACUGGCA	chr22:39145735-39146051(-)$1	316	65	87	20.9553
AUGUGGGAAUAUAGGGCACAUU	chr16:28836578-28836820(+)$1	242	197	219	22.3653
CUGAGCACUAUUUACCCUCACC	chr14:35872757-35872997(-)$1	240	193	215	21.0399
AGGGGGAAGUACAAAGCCGCUC	chr3:15093847-15094073(-)$1	226	81	103	21.6851
CAGCUACAAAUACCCAACAGCU	chr17:80765396-80765681(+)$1	285	210	232	22.0846
GUCGGAGAAUCUGGAGGCUGAC	chr4:6290587-6290861(+)$1	274	87	109	22.3720
CCUAUCACUACCGCUUCAAUGG	chr19:1011083-1011330(-)$1	247	168	190	22.3882
ACCAAAAUCAACUCCAAGGUGA	chr3:52830326-52830608(+)$1	282	197	219	20.2327
CGGUGACCCCAGUGCCCACCAU	chr19:46375139-46375466(+)$1	327	203	225	22.1481
CAGACAAAUUCCUGAAGUUUGG	chr9:35060402-35060673(-)$1	271	167	189	22.1636
UUGUGAAUUGGUUUAACAUAUA	chr2:27463644-27463922(+)$1	278	25	47	22.4636
UUGAGUAUUUUUUUUCCUUAAA	chr2:201719678-201719928(-)$1	250	79	101	21.8878
CUGGAUCGCUUACAUCUCCAGA	chr2:102441654-102441882(+)$1	228	203	225	21.8878
GGGCUGCCAUCUGUGAAGCUGC	chr9:139328341-139328605(-)$1	264	228	250	22.8370
UGAGUAUAGUAAGCAGAUGCAG	chr6:114279796-114280111(-)$1	315	273	295	21.5467
CGACCACAUCUACCGCCAGGUC	chr9:127255295-127255536(-)$1	241	161	183	22.4895
GUUCUGGGUGCAUAGAAGAACU	chr9:130658465-130658777(-)$1	312	61	83	22.1636
GAACCGCCAGGCUCAUGGGUUG	chr19:4366350-4366606(-)$1	256	185	207	22.8768
AAAUAGGAUUGUAUUAUAUGUU	chr10:103573207-103573475(-)$1	268	15	37	22.4650
GUUCCUAUUAGUGCAUGGAGGA	chr19:1090768-1091013(-)$1	245	205	227	22.6078
AGUCCUGCACUCAAACCCUAUG	chr19:649588-649827(-)$1	239	82	104	20.0901
GCAGACGCAAUUAAAACACUGC	chr2:166773756-166774026(-)$1	270	98	120	20.5842
UCACUUCUGACAGCCUGGUGGC	chr12:125262992-125263282(-)$1	290	17	39	22.7340
GUUGAUUUUUAUUCUUUCAGCU	chr3:9512026-9512279(+)$1	253	96	118	22.7280
CCCACCUUUCUCCCAUAGUGGC	chr17:37871854-37872136(+)$1	282	120	142	21.8539
GGUGGCCCUUCUCUUCCUCACC	chr1:110555360-110555653(+)$1	293	112	134	22.3720
UGGUCCCUUAUAUCAAACCCAG	chr1:35915818-35916059(-)$1	241	182	204	21.8416
GGUUGCUCAUCAUACUCAUCUA	chr17:44110303-44110563(-)$1	260	213	235	21.6851
uauuuuuuuuuuuuuuuaaaua	chr2:86357759-86358000(+)$1	241	199	221	22.9034

#DB
.((((................)	chrX:20194480-20194740(-)$1	1	146	168	20.0839
.((((...........))))((	chr2:20196885-20197164(-)$1	1	24	46	20.6255
.(.((............)).).	chr17:27064432-27064725(+)$1	1	57	79	21.8972
(((((.............))))	chr1:226111324-226111670(-)$1	1	72	94	22.6261
.((((.............))))	chr4:152025327-152025580(+)$1	1	71	93	22.4895
(((((..............)))	chr12:42707391-42707717(-)$1	1	45	67	20.6912
(((.............))))))	chr8:110351388-110351759(+)$1	1	297	319	20.3650
(((((.............))))	chr16:88724985-88725227(-)$1	1	156	178	22.3882
(((((..............)))	chr7:44113864-44114096(-)$1	1	25	47	20.9721
(((((..............)))	chr17:17721462-17721674(-)$1	1	10	32	21.1350
(((((...........))).))	chr16:67984727-67984965(-)$1	1	13	35	21.6389
(((((............)))))	chr20:419363-419627(-)$1	1	124	146	22.3720
(((((............)))))	chr11:64535436-64535702(-)$1	1	14	36	22.9034
(((((..............)))	chr17:36934445-36934744(-)$1	1	14	36	20.6912
(((((...........))).))	chr2:207025983-207026222(+)$1	1	64	86	22.4763
(.(((.............))))	chr2:86691018-86691308(+)$1	1	188	210	22.2684
(((((................)	chr2:28616587-28616802(+)$1	1	173	195	19.9419
(((((............)))))	chr1:46488539-46488787(+)$1	1	117	139	22.9034
(((((...........)))).)	chr1:169093982-169094277(+)$1	1	136	158	22.6480
.((((...........)))).)	chr7:135106927-135107225(-)$1	1	18	40	22.6968
(((((............)))))	chr11:16766042-16766372(+)$1	1	145	167	22.9034
(((((............)))..	chr6:53156613-53156868(-)$1	1	132	154	20.3639
(((((...........))).))	chr6:43196835-43197101(-)$1	1	217	239	22.8494
..(((............)))..	chr2:99980703-99980985(+)$1	1	150	172	22.6646
...((...........))....	chr2:242437657-242437925(-)$1	1	204	226	21.3434
(((((.............)).)	chr7:26242453-26242747(+)$1	1	101	123	21.3504
(((((...........))))))	chr7:40118195-40118453(+)$1	1	160	182	22.1636
(((((............)))))	chr6:33255637-33255898(-)$1	1	151	173	22.6365
(((((...........))))))	chr3:23959195-23959469(+)$1	1	45	67	22.5833
(((((............)))))	chr19:1089744-1089988(-)$1	1	78	100	22.3720
(((((...........))))))	chr10:5139627-5139892(+)$1	1	121	143	22.3653
(((((...........))))))	chr2:62112016-62112325(-)$1	1	20	42	22.1636
.((((...........))))..	chr16:70590670-70590915(+)$1	1	53	75	20.8627
(.(((................)	chr17:65144539-65144786(-)$1	1	186	208	19.9511
(((((.............))))	chr1:109238150-109238460(+)$1	1	25	47	22.6261
.((((.............))))	chr17:66520931-66521228(+)$1	1	204	226	22.4450
(((((..............)))	chr14:35872850-35873105(-)$1	1	74	96	21.1350
.((((...........))))..	chr5:139006165-139006477(+)$1	1	16	38	20.4441
((((............)))(((	chr11:68180994-68181265(+)$1	1	6	28	20.7662
.((((............)))).	chr19:18956821-18957066(+)$1	1	46	68	20.9441
(((((..............)))	chr16:88599242-88599482(+)$1	1	117	139	20.9264
(((((............)))))	chr20:10627446-10627707(-)$1	1	217	239	22.9034
(((((...........))))).	chr6:30690573-30690801(+)$1	1	43	65	21.8878
.(((............))).).	chr22:39145735-39146051(-)$1	1	65	87	20.9553
(((((...........))))))	chr16:28836578-28836820(+)$1	1	197	219	22.3653
.((((...........))))))	chr14:35872757-35872997(-)$1	1	193	215	21.0399
((.((...........)).)))	chr3:15093847-15094073(-)$1	1	81	103	21.6851
)((((.............))))	chr17:80765396-80765681(+)$1	1	210	232	22.0846
(((((............)))))	chr4:6290587-6290861(+)$1	1	87	109	22.3720
(((((.............))))	chr19:1011083-1011330(-)$1	1	168	190	22.3882
(((..............)))))	chr3:52830326-52830608(+)$1	1	197	219	20.2327
(((((...........))))..	chr19:46375139-46375466(+)$1	1	203	225	22.1481
(((((...........))))))	chr9:35060402-35060673(-)$1	1	167	189	22.1636
(((((...........)))).)	chr2:27463644-27463922(+)$1	1	25	47	22.4636
(((((...........))))).	chr2:201719678-201719928(-)$1	1	79	101	21.8878
(((((...........))))).	chr2:102441654-102441882(+)$1	1	203	225	21.8878
.((((...........)))).)	chr9:139328341-139328605(-)$1	1	228	250	22.8370
((.((...........)).)))	chr6:114279796-114280111(-)$1	1	273	295	21.5467
.((((.............))))	chr9:127255295-127255536(-)$1	1	161	183	22.4895
(((((...........))))))	chr9:130658465-130658777(-)$1	1	61	83	22.1636
.((((............)))).	chr19:4366350-4366606(-)$1	1	185	207	22.8768
(((((.............))))	chr10:103573207-103573475(-)$1	1	15	37	22.4650
.((((...........)))).)	chr19:1090768-1091013(-)$1	1	205	227	22.6078
(((((................)	chr19:649588-649827(-)$1	1	82	104	20.0901
((((..............))))	chr2:166773756-166774026(-)$1	1	98	120	20.5842
(((((...........))))).	chr12:125262992-125263282(-)$1	1	17	39	22.7340
(((((...........)))))(	chr3:9512026-9512279(+)$1	1	96	118	22.7280
((.((............)))))	chr17:37871854-37872136(+)$1	1	120	142	21.8539
(((((............)))))	chr1:110555360-110555653(+)$1	1	112	134	22.3720
.(((............)))).)	chr1:35915818-35916059(-)$1	1	182	204	21.8416
((.((...........)).)))	chr17:44110303-44110563(-)$1	1	213	235	21.6851
(((((............)))))	chr2:86357759-86358000(+)$1	1	199	221	22.9034

#PSSM
e : 0.22	f : 0.16	[ : 0.12	g : 0.09	d : 0.06	c : 0.06	= : 0.05	: : 0.04	b : 0.02	" : 0.02	a : 0.01	F : 0.01	# : 0.01	$ : 0.01	! : 0.01	% : 0.01	E : 0.01	
d : 0.29	e : 0.22	f : 0.16	g : 0.09	c : 0.08	= : 0.04	[ : 0.02	a : 0.01	b : 0.01	F : 0.01	" : 0.01	# : 0.01	
d : 0.26	e : 0.20	f : 0.15	c : 0.15	g : 0.09	[ : 0.06	= : 0.04	# : 0.01	
d : 0.25	e : 0.20	f : 0.13	c : 0.13	b : 0.09	g : 0.09	= : 0.04	v : 0.01	w : 0.01	
d : 0.23	e : 0.20	f : 0.13	b : 0.09	g : 0.09	c : 0.09	= : 0.04	u : 0.04	w : 0.02	v : 0.01	
t : 0.40	u : 0.26	v : 0.16	w : 0.11	y : 0.05	
t : 0.40	u : 0.26	v : 0.16	w : 0.11	y : 0.05	
t : 0.40	u : 0.26	v : 0.16	w : 0.11	y : 0.05	
t : 0.40	u : 0.26	v : 0.16	w : 0.11	y : 0.05	
t : 0.40	u : 0.26	v : 0.16	w : 0.11	y : 0.05	
t : 0.40	u : 0.26	v : 0.16	w : 0.11	y : 0.05	
t : 0.40	u : 0.26	v : 0.16	w : 0.11	y : 0.05	
t : 0.40	u : 0.26	v : 0.16	w : 0.11	y : 0.05	
t : 0.40	u : 0.26	v : 0.16	w : 0.11	y : 0.05	
t : 0.40	u : 0.26	v : 0.16	w : 0.11	y : 0.05	
t : 0.40	u : 0.26	v : 0.16	w : 0.11	y : 0.05	
u : 0.22	v : 0.15	d : 0.13	w : 0.11	c : 0.08	f : 0.06	e : 0.06	y : 0.05	b : 0.05	g : 0.02	= : 0.01	
d : 0.16	v : 0.15	e : 0.13	f : 0.12	c : 0.12	w : 0.09	b : 0.08	y : 0.05	g : 0.04	= : 0.01	
d : 0.23	e : 0.16	c : 0.13	f : 0.12	w : 0.08	g : 0.06	y : 0.05	b : 0.04	] : 0.04	= : 0.02	4 : 0.01	
d : 0.25	e : 0.19	f : 0.18	g : 0.08	c : 0.08	] : 0.06	y : 0.05	= : 0.04	4 : 0.01	b : 0.01	a : 0.01	
e : 0.20	f : 0.19	d : 0.12	] : 0.09	g : 0.08	y : 0.05	= : 0.04	c : 0.04	a : 0.02	4 : 0.02	5 : 0.02	G : 0.01	b : 0.01	: : 0.01	F : 0.01	2 : 0.01	
f : 0.20	e : 0.16	d : 0.13	g : 0.11	: : 0.08	c : 0.06	] : 0.04	= : 0.04	b : 0.02	4 : 0.02	5 : 0.02	G : 0.01	a : 0.01	F : 0.01	2 : 0.01	

#score	1571.9215251422856
#seq	72
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_transcript_m1_run1.txt

#BEAR
gggggggyyyyyyyyyyyyyyyyggg	chr3:48754005-48754258(-)$1	253	201	227	22.3628
####ddddyyyyyyyyyyyyyyyydd	chr10:35739032-35739302(+)$1	270	204	230	21.3804
dd[eeeeettttttttttteeeee22	chr1:29390862-29391146(+)$1	284	139	165	19.8530
a####ccc^^^^^^^^^^^^^^^^^^	chr7:119398929-119399236(-)$1	307	158	184	17.0123
dd!!ccc^^^^^^^^^^^^^^^^^^c	chr1:35646200-35646448(-)$1	248	130	156	17.2182
"""eeeeeuuuuuuuuuuuueeeee]	chr19:1270164-1270444(+)$1	280	164	190	22.2181
eeeee[bbvvvvvvvvvvvvvbb]ee	chr2:173447023-173447310(+)$1	287	252	278	19.3321
==!!eeeeesssssssssseeeee22	chr1:36393154-36393467(+)$1	313	28	54	14.9139
ggggggg^^^^^^^^^^^^^^^^^^^	chr10:126784860-126785170(-)$1	310	234	260	17.4132
gggggggxxxxxxxxxxxxxxxgggg	chr11:85763985-85764284(-)$1	299	243	269	18.7891
[ccc[bbvvvvvvvvvvvvvbb]ccc	chr2:223729249-223729503(+)$1	254	76	102	19.3678
c[cccyyyyyyyyyyyyyyyyccc]c	chr22:17086391-17086652(+)$1	261	68	94	21.1153
ffffbb[bbtttttttttttbb]bb:	chr17:56068925-56069176(-)$1	251	174	200	16.6603
eeee[ddddtttttttttttdddd]e	chr11:3071909-3072261(-)$1	352	281	307	18.8436
[bb[eeeeesssssssssseeeee]b	chr2:27820357-27820627(+)$1	270	79	105	13.9542
bffffffvvvvvvvvvvvvvffffff	chr17:80437608-80437867(+)$1	259	191	217	19.0326
ee!!a^^^^^^^^^^^^^^^^^^a22	chr3:195778515-195778791(-)$1	276	210	236	17.1103
hhhhhhhhttttttttttthhhhhhh	chr14:39650061-39650320(+)$1	259	203	229	16.1973
dddd!!ccctttttttttttccc22d	chr18:9926379-9926648(+)$1	269	170	196	18.7400
ccffffffuuuuuuuuuuuuffffff	chr1:54518011-54518261(-)$1	250	39	65	20.4789
eeffffffuuuuuuuuuuuuffffff	chr19:55856928-55857203(+)$1	275	84	110	20.3128
gg[eeeee^^^^^^^^^^^^^^^^^^	chr20:5549592-5549858(-)$1	266	49	75	17.5992
ggg[a^^^^^^^^^^^^^^^^^^^^^	chr16:23859339-23859634(+)$1	295	102	128	17.1582
gggggggattttttttttta]ggggg	chr22:22122454-22122731(-)$1	277	52	78	20.2242
ggffffffuuuuuuuuuuuuffffff	chr8:109260496-109260799(-)$1	303	210	236	20.6301
ggg[ccc^^^^^^^^^^^^^^^^^^^	chr6:31500024-31500275(-)$1	251	72	98	17.4317
hhhhhhhhwwwwwwwwwwwwwwhhhh	chr1:235476653-235476931(-)$1	278	119	145	18.6016
c!!eeeeeuuuuuuuuuuuueeeee]	chr4:10112569-10112839(-)$1	270	89	115	22.4546
ff[ddddyyyyyyyyyyyyyyyyddd	chr21:15870287-15870553(-)$1	266	33	59	21.2708
hhhhhhhhwwwwwwwwwwwwwwhhhh	chr21:39429454-39429761(-)$1	307	70	96	18.6016
gggggggyyyyyyyyyyyyyyyyggg	chr3:187458263-187458538(-)$1	275	181	207	22.3628
iiiiiiiiyyyyyyyyyyyyyyyyii	chr11:75114079-75114321(+)$1	242	122	148	22.0013
!eeeeeccctttttttttttccc555	chr2:61757929-61758221(-)$1	292	58	84	17.6809
:eeeeewwwwwwwwwwwwwweeeeec	chr16:20696123-20696355(+)$1	232	164	190	18.9123
ff!!dddduuuuuuuuuuuudddd22	chr16:67205403-67205692(+)$1	289	114	140	21.2658
fff[bbwwwwwwwwwwwwwwbb]fff	chr9:138833608-138833878(-)$1	270	134	160	18.7583
iiiiiiiiyyyyyyyyyyyyyyyyii	chr21:34899123-34899412(-)$1	289	230	256	22.0013
fffeeeeettttttttttteeeee]f	chr7:120720170-120720429(+)$1	259	57	83	19.7515
hhhhhhhhyyyyyyyyyyyyyyyyhh	chr9:37219999-37220304(+)$1	305	63	89	20.3183
bb!!bbxxxxxxxxxxxxxxxbb22b	chr19:15408024-15408308(-)$1	284	123	149	16.8684
bb[eeeeettttttttttteeeee]b	chr16:89498186-89498455(-)$1	269	28	54	19.6618
ddd:dddduuuuuuuuuuuudddd::	chr20:57563152-57563480(+)$1	328	225	251	17.5410
ff^^^^^^^^^^^^^^^^^^^^^^^^	chr1:90493004-90493326(+)$1	322	139	165	16.1621
(((fffffftttttttttttffffff	chr3:195776328-195776617(-)$1	289	113	139	16.6422
c!!eeeeeuuuuuuuuuuuueeeee2	chr9:134079652-134079926(+)$1	274	27	53	22.3570
"""eeeeewwwwwwwwwwwwwweeee	chr16:20696155-20696386(+)$1	231	130	156	21.0984
gg^^^^^^^^^^^^^^^^^^^ggggg	chr12:121772370-121772679(-)$1	309	273	299	15.7859
####dddduuuuuuuuuuuudddd22	chr16:1905530-1905882(-)$1	352	238	264	21.1786
c!!eeeeexxxxxxxxxxxxxxxeee	chr5:53388407-53388653(-)$1	246	186	212	19.1320
ccceeeee^^^^^^^^^^^^^^^^^^	chr4:68376169-68376443(-)$1	274	233	259	17.1674
gggggggvvvvvvvvvvvvvgggggg	chr21:15886390-15886706(-)$1	316	289	315	20.3897
hh:fffffftttttttttttffffff	chr3:50003547-50003812(+)$1	265	61	87	17.3350
####eeeeesssssssssseeeee]e	chr11:2712516-2712781(-)$1	265	175	201	14.6178
e!!eeeeevvvvvvvvvvvvveeeee	chr3:151994315-151994648(+)$1	333	223	249	21.1180
hhhhhhhhuuuuuuuuuuuuhhhhhh	chr7:119349074-119349393(-)$1	319	55	81	18.7805
b####ddddtttttttttttdddd33	chr2:96934643-96934931(+)$1	288	39	65	19.2298

#otherMatches

#Seq PSSM
GAUGAGGGAAUCUACACACUUAACCU	chr3:48754005-48754258(-)$1	253	201	227	22.3628
AGAGGGUGGAGGUUAAGAUUAAAACA	chr10:35739032-35739302(+)$1	270	204	230	21.3804
GUAUGUUUGCAACUCAACAAGACAAG	chr1:29390862-29391146(+)$1	284	139	165	19.8530
GGUUAUCACAGAACAAUCCAGAAUAA	chr7:119398929-119399236(-)$1	307	158	184	17.0123
AUCGGCAAUAUCAGUAAUUUCAUUAU	chr1:35646200-35646448(-)$1	248	130	156	17.2182
CCGUUCGGAAAUAGGAGAACCUGAGA	chr19:1270164-1270444(+)$1	280	164	190	22.2181
GUUGACAUUACUUAUCUCAUUAUCUU	chr2:173447023-173447310(+)$1	287	252	278	19.3321
agaaaugggucaucucacuccuguca	chr1:36393154-36393467(+)$1	313	28	54	14.9139
UGUUUUCUUUUUCACUUUUCAUAACU	chr10:126784860-126785170(-)$1	310	234	260	17.4132
GAUAACUGGACCUUAAAUGAUAAGUU	chr11:85763985-85764284(-)$1	299	243	269	18.7891
aucugcagguaggggugggaugggga	chr2:223729249-223729503(+)$1	254	76	102	19.3678
AGUUCAUGAAAGUUGAUGUUAGAAAU	chr22:17086391-17086652(+)$1	261	68	94	21.1153
GGGUGUCACUUUGAAAAUAUGUUGCU	chr17:56068925-56069176(-)$1	251	174	200	16.6603
GGGCCUGCUGGUAUCUGGGGAGCAUG	chr11:3071909-3072261(-)$1	352	281	307	18.8436
AUGUUGCCUAAAUAAGAUAGGGCAUC	chr2:27820357-27820627(+)$1	270	79	105	13.9542
CCAUGUGUUUCUAGGUCUUCCACGUG	chr17:80437608-80437867(+)$1	259	191	217	19.0326
AUCUCUAGAAUUUUAAGUGCUUUGUA	chr3:195778515-195778791(-)$1	276	210	236	17.1103
CUUUAGACAUGGAAAAGGAGUCUGAG	chr14:39650061-39650320(+)$1	259	203	229	16.1973
ggaaugggcuuuauauuuguguuguu	chr18:9926379-9926648(+)$1	269	170	196	18.7400
GGGGAGUCAGACAAGUAGACGAUUCC	chr1:54518011-54518261(-)$1	250	39	65	20.4789
CCCCUCCUAGACGGGGAACAGGGAGG	chr19:55856928-55857203(+)$1	275	84	110	20.3128
UUGUUUCUGCGAAAUGGUAUUAGGAg	chr20:5549592-5549858(-)$1	266	49	75	17.5992
UGAGGGAGGGAGGAGCAGGUGGGAGG	chr16:23859339-23859634(+)$1	295	102	128	17.1582
ccugugucagaaaagaaaaGUAUACA	chr22:22122454-22122731(-)$1	277	52	78	20.2242
GGGAGGGAUUUUCGCAUCAUUUCUUC	chr8:109260496-109260799(-)$1	303	210	236	20.6301
cacuaccaaagaagaaaaaaauuagc	chr6:31500024-31500275(-)$1	251	72	98	17.4317
GGUAGGGCGAAUGACUGUAGGAGCCC	chr1:235476653-235476931(-)$1	278	119	145	18.6016
GCCUACGGUAAGGAGAAGUUCUGUAU	chr4:10112569-10112839(-)$1	270	89	115	22.4546
CUCUGCAAAGCUAUUAAUUUACAUGC	chr21:15870287-15870553(-)$1	266	33	59	21.2708
gagauagagacagagagauuuauuua	chr21:39429454-39429761(-)$1	307	70	96	18.6016
GCUCCUUAGAAGUAUUUAUGAGAAAG	chr3:187458263-187458538(-)$1	275	181	207	22.3628
UAGGUAAGGACAUAGAAAAGACGGCU	chr11:75114079-75114321(+)$1	242	122	148	22.0013
AGUCAUUGCUUAAGUCCCAUGUACAA	chr2:61757929-61758221(-)$1	292	58	84	17.6809
ACUGUGAAGAAGAAAGGAGGUACAGA	chr16:20696123-20696355(+)$1	232	164	190	18.9123
UUCUGCUAGACAGGAAAAUAUAGUUC	chr16:67205403-67205692(+)$1	289	114	140	21.2658
UAGGGAUCGAGAUACUAGCUUUGUUA	chr9:138833608-138833878(-)$1	270	134	160	18.7583
GAAGACCACCAGGAGAUGAAAGAAUG	chr21:34899123-34899412(-)$1	289	230	256	22.0013
UUUGGUUAUCCUGUUCACCUAGCCUG	chr7:120720170-120720429(+)$1	259	57	83	19.7515
UAUGUUUCUGAGUAAGGAAGUAAUGA	chr9:37219999-37220304(+)$1	305	63	89	20.3183
GUAUAGUCCAUCUGAUGUUUUCUUAG	chr19:15408024-15408308(-)$1	284	123	149	16.8684
GCGGUUGCAGUAGGGAGGAGUGACAG	chr16:89498186-89498455(-)$1	269	28	54	19.6618
aucaguggggaaucuuuaagccacag	chr20:57563152-57563480(+)$1	328	225	251	17.5410
gggguagugggagaaguagagggagu	chr1:90493004-90493326(+)$1	322	139	165	16.1621
GAAAACCCUUUUCUACAGUUAGGGUU	chr3:195776328-195776617(-)$1	289	113	139	16.6422
ugaagaagaaccaaauagaauuucua	chr9:134079652-134079926(+)$1	274	27	53	22.3570
AGACUGUGAAGAAGAAAGGAGGUACA	chr16:20696155-20696386(+)$1	231	130	156	21.0984
uaguaaauagaauuaaguagauaaaa	chr12:121772370-121772679(-)$1	309	273	299	15.7859
gcuauuacguuuaUAAUGAAGUAAGA	chr16:1905530-1905882(-)$1	352	238	264	21.1786
CGCUUUAAGGAAUAAUGCAAAGAUUA	chr5:53388407-53388653(-)$1	246	186	212	19.1320
GGCAUUGGGAAUAUACAUAGAUAAAA	chr4:68376169-68376443(-)$1	274	233	259	17.1674
gaaugggcucaaacaauaccccuauu	chr21:15886390-15886706(-)$1	316	289	315	20.3897
UUGAACUGAGUGACCCAGAAUCAGUU	chr3:50003547-50003812(+)$1	265	61	87	17.3350
GAGGCCUGAGCCCAAGAUGUCAGGAU	chr11:2712516-2712781(-)$1	265	175	201	14.6178
CGUAGUGUGGAACAUAAACAGACACU	chr3:151994315-151994648(+)$1	333	223	249	21.1180
AAAUAUAUUcaccauuaauuguauau	chr7:119349074-119349393(-)$1	319	55	81	18.7805
UGGUAAUGCAUUUAAAUGGGGCAUAG	chr2:96934643-96934931(+)$1	288	39	65	19.2298

#DB
(((((((................)))	chr3:48754005-48754258(-)$1	1	201	227	22.3628
....((((................))	chr10:35739032-35739302(+)$1	1	204	230	21.3804
((.(((((...........)))))..	chr1:29390862-29391146(+)$1	1	139	165	19.8530
(....(((..................	chr7:119398929-119399236(-)$1	1	158	184	17.0123
((..(((..................)	chr1:35646200-35646448(-)$1	1	130	156	17.2182
...(((((............))))).	chr19:1270164-1270444(+)$1	1	164	190	22.2181
(((((.((.............)).))	chr2:173447023-173447310(+)$1	1	252	278	19.3321
((..(((((..........)))))..	chr1:36393154-36393467(+)$1	1	28	54	14.9139
(((((((...................	chr10:126784860-126785170(-)$1	1	234	260	17.4132
(((((((...............))))	chr11:85763985-85764284(-)$1	1	243	269	18.7891
.(((.((.............)).)))	chr2:223729249-223729503(+)$1	1	76	102	19.3678
(.(((................))).)	chr22:17086391-17086652(+)$1	1	68	94	21.1153
))))((.((...........)).)).	chr17:56068925-56069176(-)$1	1	174	200	16.6603
((((.((((...........)))).)	chr11:3071909-3072261(-)$1	1	281	307	18.8436
.((.(((((..........))))).)	chr2:27820357-27820627(+)$1	1	79	105	13.9542
(((((((.............))))))	chr17:80437608-80437867(+)$1	1	191	217	19.0326
((..(..................)..	chr3:195778515-195778791(-)$1	1	210	236	17.1103
((((((((...........)))))))	chr14:39650061-39650320(+)$1	1	203	229	16.1973
((((..(((...........)))..)	chr18:9926379-9926648(+)$1	1	170	196	18.7400
((((((((............))))))	chr1:54518011-54518261(-)$1	1	39	65	20.4789
))((((((............))))))	chr19:55856928-55857203(+)$1	1	84	110	20.3128
((.(((((..................	chr20:5549592-5549858(-)$1	1	49	75	17.5992
(((.(.....................	chr16:23859339-23859634(+)$1	1	102	128	17.1582
((((((((...........).)))))	chr22:22122454-22122731(-)$1	1	52	78	20.2242
))((((((............))))))	chr8:109260496-109260799(-)$1	1	210	236	20.6301
(((.(((...................	chr6:31500024-31500275(-)$1	1	72	98	17.4317
((((((((..............))))	chr1:235476653-235476931(-)$1	1	119	145	18.6016
(..(((((............))))).	chr4:10112569-10112839(-)$1	1	89	115	22.4546
((.((((................)))	chr21:15870287-15870553(-)$1	1	33	59	21.2708
((((((((..............))))	chr21:39429454-39429761(-)$1	1	70	96	18.6016
(((((((................)))	chr3:187458263-187458538(-)$1	1	181	207	22.3628
((((((((................))	chr11:75114079-75114321(+)$1	1	122	148	22.0013
.((((((((...........)))...	chr2:61757929-61758221(-)$1	1	58	84	17.6809
.(((((..............)))))(	chr16:20696123-20696355(+)$1	1	164	190	18.9123
((..((((............))))..	chr16:67205403-67205692(+)$1	1	114	140	21.2658
(((.((..............)).)))	chr9:138833608-138833878(-)$1	1	134	160	18.7583
((((((((................))	chr21:34899123-34899412(-)$1	1	230	256	22.0013
((((((((...........))))).)	chr7:120720170-120720429(+)$1	1	57	83	19.7515
((((((((................))	chr9:37219999-37220304(+)$1	1	63	89	20.3183
((..((...............))..)	chr19:15408024-15408308(-)$1	1	123	149	16.8684
((.(((((...........))))).)	chr16:89498186-89498455(-)$1	1	28	54	19.6618
))).((((............))))..	chr20:57563152-57563480(+)$1	1	225	251	17.5410
((........................	chr1:90493004-90493326(+)$1	1	139	165	16.1621
...((((((...........))))))	chr3:195776328-195776617(-)$1	1	113	139	16.6422
(..(((((............))))).	chr9:134079652-134079926(+)$1	1	27	53	22.3570
...(((((..............))))	chr16:20696155-20696386(+)$1	1	130	156	21.0984
((...................)))))	chr12:121772370-121772679(-)$1	1	273	299	15.7859
....((((............))))..	chr16:1905530-1905882(-)$1	1	238	264	21.1786
(..(((((...............)))	chr5:53388407-53388653(-)$1	1	186	212	19.1320
)))(((((..................	chr4:68376169-68376443(-)$1	1	233	259	17.1674
(((((((.............))))))	chr21:15886390-15886706(-)$1	1	289	315	20.3897
)).((((((...........))))))	chr3:50003547-50003812(+)$1	1	61	87	17.3350
....(((((..........))))).)	chr11:2712516-2712781(-)$1	1	175	201	14.6178
(..(((((.............)))))	chr3:151994315-151994648(+)$1	1	223	249	21.1180
((((((((............))))))	chr7:119349074-119349393(-)$1	1	55	81	18.7805
(....((((...........))))..	chr2:96934643-96934931(+)$1	1	39	65	19.2298

#PSSM
g : 0.19	c : 0.10	f : 0.10	h : 0.10	e : 0.08	d : 0.07	b : 0.07	# : 0.05	" : 0.03	[ : 0.03	i : 0.03	a : 0.01	= : 0.01	! : 0.01	: : 0.01	( : 0.01	
g : 0.19	f : 0.12	e : 0.10	h : 0.10	# : 0.08	d : 0.07	! : 0.07	c : 0.05	b : 0.05	" : 0.03	i : 0.03	= : 0.01	[ : 0.01	( : 0.01	
! : 0.16	g : 0.14	f : 0.12	# : 0.08	h : 0.08	[ : 0.07	e : 0.07	c : 0.05	" : 0.03	d : 0.03	i : 0.03	^ : 0.03	b : 0.01	( : 0.01	: : 0.01	
e : 0.26	f : 0.12	g : 0.10	# : 0.08	! : 0.08	h : 0.08	[ : 0.07	c : 0.03	d : 0.03	i : 0.03	^ : 0.03	: : 0.01	
e : 0.30	g : 0.10	f : 0.10	d : 0.08	h : 0.08	c : 0.05	b : 0.05	# : 0.03	[ : 0.03	a : 0.03	i : 0.03	^ : 0.03	! : 0.01	
e : 0.28	d : 0.12	g : 0.10	f : 0.10	h : 0.08	b : 0.07	^ : 0.07	c : 0.05	i : 0.03	[ : 0.01	y : 0.01	! : 0.01	
e : 0.24	d : 0.12	g : 0.10	f : 0.10	c : 0.08	h : 0.08	^ : 0.07	b : 0.03	i : 0.03	w : 0.03	y : 0.01	[ : 0.01	x : 0.01	
e : 0.24	^ : 0.12	d : 0.10	h : 0.08	f : 0.08	y : 0.07	c : 0.05	v : 0.05	b : 0.03	x : 0.03	i : 0.03	w : 0.03	a : 0.01	
^ : 0.17	u : 0.17	y : 0.14	t : 0.08	v : 0.08	w : 0.08	e : 0.05	x : 0.05	d : 0.03	c : 0.03	f : 0.03	b : 0.01	
t : 0.21	^ : 0.17	u : 0.17	y : 0.14	v : 0.08	w : 0.08	s : 0.05	x : 0.05	
t : 0.21	^ : 0.17	u : 0.17	y : 0.14	v : 0.08	w : 0.08	s : 0.05	x : 0.05	
t : 0.21	^ : 0.17	u : 0.17	y : 0.14	v : 0.08	w : 0.08	s : 0.05	x : 0.05	
t : 0.21	^ : 0.17	u : 0.17	y : 0.14	v : 0.08	w : 0.08	s : 0.05	x : 0.05	
t : 0.21	^ : 0.17	u : 0.17	y : 0.14	v : 0.08	w : 0.08	s : 0.05	x : 0.05	
t : 0.21	^ : 0.17	u : 0.17	y : 0.14	v : 0.08	w : 0.08	s : 0.05	x : 0.05	
t : 0.21	^ : 0.17	u : 0.17	y : 0.14	v : 0.08	w : 0.08	s : 0.05	x : 0.05	
t : 0.21	^ : 0.17	u : 0.17	y : 0.14	v : 0.08	w : 0.08	s : 0.05	x : 0.05	
t : 0.21	^ : 0.17	u : 0.17	y : 0.14	v : 0.08	w : 0.08	s : 0.05	x : 0.05	
t : 0.21	^ : 0.17	u : 0.17	y : 0.14	v : 0.08	w : 0.08	s : 0.05	x : 0.05	
^ : 0.17	u : 0.17	y : 0.14	t : 0.12	e : 0.10	v : 0.08	w : 0.08	x : 0.05	h : 0.01	a : 0.01	
e : 0.17	^ : 0.17	y : 0.14	f : 0.10	d : 0.08	x : 0.05	b : 0.05	w : 0.05	v : 0.03	h : 0.03	c : 0.03	] : 0.01	g : 0.01	
e : 0.19	^ : 0.16	y : 0.12	f : 0.10	b : 0.08	d : 0.08	c : 0.05	g : 0.05	w : 0.05	x : 0.03	h : 0.03	
e : 0.21	^ : 0.16	y : 0.12	f : 0.10	d : 0.08	g : 0.07	h : 0.07	] : 0.05	c : 0.05	b : 0.03	x : 0.01	
e : 0.23	^ : 0.14	f : 0.12	g : 0.10	d : 0.10	y : 0.07	h : 0.07	c : 0.03	2 : 0.03	] : 0.01	b : 0.01	a : 0.01	5 : 0.01	
^ : 0.14	e : 0.14	2 : 0.12	f : 0.12	g : 0.10	] : 0.10	h : 0.08	d : 0.03	i : 0.03	c : 0.01	b : 0.01	5 : 0.01	: : 0.01	3 : 0.01	
f : 0.14	^ : 0.12	g : 0.10	2 : 0.10	e : 0.10	h : 0.08	c : 0.07	d : 0.05	b : 0.05	] : 0.03	: : 0.03	i : 0.03	5 : 0.01	3 : 0.01	

#score	1064.3992908737337
#seq	56
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_UTR_m1_run1.txt

#BEAR
gggggccc[ccc[cccccclllccc22ccc]cccccc]	chr2:54197790-54198049(-)$1	259	160	198	14.3954
eeeeffffff[a[a[cccmmmmccc]a]a]ffffff22	chr14:50778580-50779004(-)$1	424	42	80	14.6309
###==========="""ammmma22===========dd	chr15:34817452-34817721(-)$1	269	172	210	17.1171
iiiii[eeeee!!cccooooooccc]eeeeeiiiiiii	chr9:140260656-140261004(-)$1	348	229	267	13.6695
=====[a[ccc[a[ddddmmmmdddda]ccca]=====	chr16:4660714-4661055(-)$1	341	185	223	15.4017
###ggggggg$$$$$cccmmmmccc666666ggggggg	chr17:46128070-46128421(+)$1	351	156	194	13.9791
:ccc[iiiiiiiii[cccmmmmccc]iiiiiiiiiccc	chr9:139317766-139318204(+)$1	438	194	232	17.3704
!==========="""cccmmmmccc===========22	chr4:763962-764209(-)$1	247	177	215	19.3449
b[bbiiiiiiiii####ammmma4444iiiiiiiii66	chr3:23851852-23852198(+)$1	346	27	65	15.4578
eeeee"""ffffff[cccmmmmccc22ffffff]eeee	chr22:50050737-50050994(-)$1	257	111	149	14.2882
eee!!ggggggg"""cccmmmmccc22ggggggg]eee	chr16:23690942-23691246(+)$1	304	33	71	17.5391
::a[ggggggg[a!!ccclllccc22a]ggggggg]a:	chr22:50013563-50013844(-)$1	281	151	189	13.2779
&&&&&==========[bbmmmmbb==========gggg	chr16:1362387-1362694(+)$1	307	221	259	13.3283
iiiiiii===========mmmm===========:::cc	chr1:200589528-200589859(-)$1	331	87	125	14.0931
ccc[bbeeeee[ccccccmmmmccc]ccc]eeeee]bb	chr9:138824937-138825218(-)$1	281	120	158	13.6590
==========ccccccooooooccc4444ccc]=====	chr8:144674992-144675264(-)$1	272	59	97	15.5497
))))ggggggg####a[ammmma]a333ggggggg22d	chr3:49050061-49050364(+)$1	303	136	174	14.8969
g####bb[ccc"""a[bbmmmmbb]a]ccc]bb4444g	chr15:34671239-34671502(-)$1	263	52	90	13.2762
!dddd[ggggggg[ddddllldddd]ggggggg333dd	chr19:54970742-54971012(+)$1	270	137	175	13.1764
a"""ccc[bb[ddddcccmmmmccc]dddd]bbccc33	chr7:102036324-102036647(+)$1	323	234	272	13.6570
:ggggggg[==========lll==========22gggg	chr16:1413478-1413809(-)$1	331	222	260	14.8014
gggg"""dddd####cccmmmmccc]dddd22gggggg	chr1:155531896-155532226(-)$1	330	249	287	15.5868
ffff[a[ggggggg[ccclllccc22ggggggg]a]ff	chr7:148580485-148580787(-)$1	302	191	229	14.0532
b]iiiiiiiii]bb]ccc4444ccc]bb]iiiiiiiii	chr15:80214902-80215226(-)$1	324	218	256	12.8628
qeeeeeffffff[a[ccclllccca]ffffff======	chr16:1428929-1429205(-)$1	276	37	75	13.0251
iiiiiiiiiccc[a[cccmmmmccc22a]ccc22iiii	chr12:133345649-133346006(-)$1	357	264	302	17.4753
d[ffffff[bb[a!!cccmmmmccc22a]bbffffffd	chr1:228270791-228271037(+)$1	246	58	96	14.5223
fffccc!!ccc####cccmmmmccc333ccc]ccc22f	chr3:49050189-49050477(+)$1	288	108	146	16.6284
]cccccc[ccc[bb!!ccclllccc333bb]ccc]ccc	chr5:138629678-138629996(+)$1	318	220	258	14.0642
eeeee=============mmmm=============>>>	chr8:101962655-101962915(-)$1	260	51	89	16.1674
iiiiiiiieeeee[ddddmmmmddddeeeee22iiiii	chr1:171750759-171751188(+)$1	429	132	170	13.0935
iiiii[bb[ggggggg[ammmma]gggggggbbiiiii	chr4:1945740-1946006(+)$1	266	52	90	14.2297
ccggggggg[abbddddammmma]dddd]bb]a]gggg	chr3:33481531-33481868(-)$1	337	166	204	12.9575
:ggggggg"""a!!ddddmmmmdddd22a22ggggggg	chr5:179248427-179248714(+)$1	287	183	221	14.0946
:eeeee!!ccc####cccmmmmccc4444ccc]eeeee	chr11:10529792-10530042(-)$1	250	174	212	15.5908
eeeccc]bbeeeee[cccmmmmccc]eeeeebb[a[gg	chr3:195635566-195635869(-)$1	303	82	120	12.6128
"""a[==========aooooooa]==========]a33	chr19:7978265-7978568(+)$1	303	144	182	15.5079
!eeeee$$$$$ccc[cccmmmmccc]ccc333eeeeeb	chr20:62331495-62331763(-)$1	268	196	234	13.9015
ccc[bbeeeee[ccccccmmmmccc]ccc]eeeee]bb	chr9:138824905-138825137(-)$1	232	39	77	13.6590
e[dddd"""ffffffcccmmmmccc]ffffff333ddd	chr15:34671361-34671607(-)$1	246	197	235	13.6337
ggggggg[dddd[a[cccmmmmcccadddd]ggggggg	chr2:3627981-3628314(+)$1	333	215	253	15.4978
c[ffffff[ccc!!ddddmmmmdddd22ccc]ffffff	chr15:34817625-34817866(-)$1	241	26	64	13.1160
iiiii"""==========mmmm==========iiiiii	chr12:109124026-109124319(-)$1	293	197	235	17.4998
eee[eeeeecccbb[cccmmmmccc]bb]ccc]eeeee	chr6:31638707-31638987(+)$1	280	23	61	14.0046
dd[ccc"""dddd!!cccmmmmccc22dddd333ccc]	chr9:126691945-126692268(-)$1	323	116	154	15.3123
:::ccc[ccca[bb[cccmmmmccc22bb]a]ccc]cc	chr20:62331326-62331602(-)$1	276	0	38	12.9434
dd"""ggggggg!!cccnnnnnccc22gggggggdddd	chr14:104163940-104164216(+)$1	276	94	132	13.7658
Dccc==============mmmm==============]c	chr16:2138719-2139069(-)$1	350	166	204	16.7398
!dddd[ggggggg[ddddllldddd]ggggggg333dd	chr19:54970812-54971104(+)$1	292	67	105	13.1764
hhh[gggggggbb!!cccmmmmccc333bb]ggggggg	chr21:47610630-47610942(-)$1	312	116	154	16.8167
"ccc"""==========nnnnn==========333ccc	chr19:50168401-50168663(-)$1	262	124	162	14.5124
::===========!!ddddllldddd22==========	chr5:139038984-139039314(+)$1	330	250	288	14.2509
ccc!!dddd!!bb!!cccmmmmccc]bb22dddd22cc	chr11:66394406-66394698(+)$1	292	26	64	13.4462
##ggggggg[bb!!ddddmmmmdddd22bbgggggggb	chr1:23697607-23697993(+)$1	386	248	286	14.2843
:===========!!cccnnnnnccc]===========C	chr18:3451868-3452127(+)$1	259	91	129	15.0748
#dddd[dddd$$$$$cccmmmmccc4444dddd22ddd	chr16:89663327-89663600(+)$1	273	196	234	13.3333

#otherMatches

#Seq PSSM
gcccccggagccgggcgggcgucccgagccgggcccgc	chr2:54197790-54198049(-)$1	259	160	198	14.3954
CGCGUGAGGGGCGGGGCUAAAGAGCGCGGGUCCUCGGC	chr14:50778580-50779004(-)$1	424	42	80	14.6309
UAAAGUGGCAUUAUUGACUGCUGGUGUGAUGCUACUGU	chr15:34817452-34817721(-)$1	269	172	210	17.1171
AGGAGCGGCUGGGGCUGGCAGGAGCACAGCCCUCUUCU	chr9:140260656-140261004(-)$1	348	229	267	13.6695
CCCCCAGUCAUGGUGCUGGUGCCAGCUGGUGCAGGGGG	chr16:4660714-4661055(-)$1	341	185	223	15.4017
UUGUACUUUCAGAGGUGAGGUGUCGAGAAGGGAAAGUG	chr17:46128070-46128421(+)$1	351	156	194	13.9791
UGCCACGAGGAGGGCGGUCGGUGCUUCCCUCCUCGGGC	chr9:139317766-139318204(+)$1	438	194	232	17.3704
GCGUACACAUAUGUAGCAUGCAUGUGUGUGUGUGCGGC	chr4:763962-764209(-)$1	247	177	215	19.3449
GGGGCCCUUUGUGAAGUCGAGGGUUGGUGCGGAGGGAG	chr3:23851852-23852198(+)$1	346	27	65	15.4578
GCGGGCAGAGAUGGGGCAGAGGUGCGGCUGUCUACCCG	chr22:50050737-50050994(-)$1	257	111	149	14.2882
AGGAGUCCCAGGUUAGUGAUGCCGCGCCCUGGGAGCUU	chr16:23690942-23691246(+)$1	304	33	71	17.5391
ggguccgaggaggcuggcgaugccuucguccuugguca	chr22:50013563-50013844(-)$1	281	151	189	13.2779
GGCUGCGGCGGCUCCGACGCAGGUGGAGCUGCUGACCU	chr16:1362387-1362694(+)$1	307	221	259	13.3283
CGGCACUGGGGAGGGCGUGCGGACGCUUUCCCUACAGG	chr1:200589528-200589859(-)$1	331	87	125	14.0931
UAUUGCUUAUAAACUUUGGUGACGGUAGUGUGUAAGGC	chr9:138824937-138825218(-)$1	281	120	158	13.6590
UUAUCUUGUCUCAGGCUACCUUGCUCAGGUGACGACAG	chr8:144674992-144675264(-)$1	272	59	97	15.5497
GCCAAUGGGGAAGGUCGUGUCAAGGUUGUCCCCAUCAA	chr3:49050061-49050364(+)$1	303	136	174	14.8969
GAAAUGCCAAUUCCAGGCCAAAGCGUUAUUUGCCAAGU	chr15:34671239-34671502(-)$1	263	52	90	13.2762
UUUGGAGACUCAUUCUGGAAUCUAGUGUGGGUCAAGCC	chr19:54970742-54971012(+)$1	270	137	175	13.1764
GGGACUGGAGAGGUCGGCUAGGGCCAGGCUACUCAGGC	chr7:102036324-102036647(+)$1	323	234	272	13.6570
CGGGGCGUAGGAGCUGGCUGGCGGCCGGCUCUGCAUGU	chr16:1413478-1413809(-)$1	331	222	260	14.8014
AUCGCUCUCGGCCUCGGCCUCGGCCUCCGACACGGUGA	chr1:155531896-155532226(-)$1	330	249	287	15.5868
CGUUCGCGGCGGGGAACUCGGAGUAGCUUCGCCUCUGA	chr7:148580485-148580787(-)$1	302	191	229	14.0532
UAGCGUGGAUGGGGAGACCAUGUGGAUCAGCACUCCCC	chr15:80214902-80215226(-)$1	324	218	256	12.8628
AGCUUGUCCUCGCGUGUCCCUGACCCCGGGGGACCGCG	chr16:1428929-1429205(-)$1	276	37	75	13.0251
CAGGCUCUCACAGGAUCCGGAGGGAAAUGUGUUAGAGG	chr12:133345649-133346006(-)$1	357	264	302	17.4753
CGCCCGCGCGUGGACGGUUGGGAUUAGCGGCCGCGGGG	chr1:228270791-228271037(+)$1	246	58	96	14.5223
CCCUGCGUGGUUAUGAGGAGCUCCUGUUGCUGGCAUCG	chr3:49050189-49050477(+)$1	288	108	146	16.6284
GCUCGAGGCCUGAGGGACAGACUGUACACUGGGGGCUU	chr5:138629678-138629996(+)$1	318	220	258	14.0642
GCUGCUCCUCCCUCUGGCUCCGGUCGGGGGGAGGAAUU	chr8:101962655-101962915(-)$1	260	51	89	16.1674
GCAAGCGUGUGUGAGAUUCAGUGGUCCAUGCGUGCGUU	chr1:171750759-171751188(+)$1	429	132	170	13.0935
AUGAUAGUGUAUCUCAGCGGGGGGUGGGGUGACAUCGU	chr4:1945740-1946006(+)$1	266	52	90	14.2297
CAGCCUCCCAGCGGUCCCGGAGGAGGAUGCGACCGGGG	chr3:33481531-33481868(-)$1	337	166	204	12.9575
ACGCGGGUAAACAAGCGCGGGGGUGCGGGGGACUCGCG	chr5:179248427-179248714(+)$1	287	183	221	14.0946
CACCGCCUGCCCAGUGACAUGCGUUUaacggccgcggu	chr11:10529792-10530042(-)$1	250	174	212	15.5908
CGCCCCGAGCUGGUGGGGAgggcccggccgguggggcc	chr3:195635566-195635869(-)$1	303	82	120	12.6128
cugagggugggggugcgagguggUCACUCCCAUCGUGC	chr19:7978265-7978568(+)$1	303	144	182	15.5079
AGCCUUUCCACAGGGCGCAGCGGCGGCCUUUCGAGGCC	chr20:62331495-62331763(-)$1	268	196	234	13.9015
UAUUGCUUAUAAACUUUGGUGACGGUAGUGUGUAAGGC	chr9:138824905-138825137(-)$1	232	39	77	13.6590
UCUUAGAAUGAAUUUUACCAAUGUAUGAGUUCUUGUUA	chr15:34671361-34671607(-)$1	246	197	235	13.6337
CCGGUGCAGUGGUGUACAGUUCUGUCCCACAGCAUUGG	chr2:3627981-3628314(+)$1	333	215	253	15.4978
GUGGUAUGAUUUCUAGCCCGUGGGUUUAAAACUGUAUC	chr15:34817625-34817866(-)$1	241	26	64	13.1160
UUUUUGGGAGUGUUCAAAGGAUUUUGAACGCUGGAAAA	chr12:109124026-109124319(-)$1	293	197	235	17.4998
AAGGUCCAUAUGCUUGUAGGUGUGCUGGUCAUGGUGGG	chr6:31638707-31638987(+)$1	280	23	61	14.0046
ccgggcggagccgggccgggcgcggggcggcgaggccg	chr9:126691945-126692268(-)$1	323	116	154	15.3123
UCUGGCAGCCCGGCUGGCCCAGGCCCUGCAGCGGCAGC	chr20:62331326-62331602(-)$1	276	0	38	12.9434
GUUGUACGGUGGGAAUCAAGGGGGUCACCACUGUGCCC	chr14:104163940-104164216(+)$1	276	94	132	13.7658
GACUGUGUGUGUGUGUGUGUGCGCGCGCGCACGCGCGA	chr16:2138719-2139069(-)$1	350	166	204	16.7398
UUUGGAGACUCAUUCUGGAAUCUAGUGUGGGUCAAGCC	chr19:54970812-54971104(+)$1	292	67	105	13.1764
ACUGUAGGUUCAUUUCUGAAAGUAGCUUGUCGGGCUUG	chr21:47610630-47610942(-)$1	312	116	154	16.8167
UGGGAGAUCUUCUGUAGGGGGACUGUGGAAGGGGGUCU	chr19:50168401-50168663(-)$1	262	124	162	14.5124
GAGCCCUCCGGAAGGUCCUCCUGGGAGGUUCCGGGGGG	chr5:139038984-139039314(+)$1	330	250	288	14.2509
GGCUCCCUUUUAUUUUUGUGCGCGAUAUUUAAGGUCGU	chr11:66394406-66394698(+)$1	292	26	64	13.4462
AGCCUUCAGCUGGACUCAGGGUUGGGGUCACUGGAGGA	chr1:23697607-23697993(+)$1	386	248	286	14.2843
GGGCUCUGUGUUUCGAGGAUGGUUCUAGCGCAGAGCCG	chr18:3451868-3452127(+)$1	259	91	129	15.0748
UACCCUGUGCUUUUUGCCGUCGGGCCUCUGCACCUGGG	chr16:89663327-89663600(+)$1	273	196	234	13.3333

#DB
((((((((.(((.((((((...)))..))).)))))).	chr2:54197790-54198049(-)$1	1	160	198	14.3954
((((((((((.(.(.(((....))).).).))))))..	chr14:50778580-50779004(-)$1	1	42	80	14.6309
...(((((((((((...(....)..)))))))))))))	chr15:34817452-34817721(-)$1	1	172	210	17.1171
(((((.(((((..(((......))).))))))))))))	chr9:140260656-140261004(-)$1	1	229	267	13.6695
(((((.(.(((.(.((((....))))).)))).)))))	chr16:4660714-4661055(-)$1	1	185	223	15.4017
...(((((((.....(((....)))......)))))))	chr17:46128070-46128421(+)$1	1	156	194	13.9791
.(((.(((((((((.(((....))).))))))))))))	chr9:139317766-139318204(+)$1	1	194	232	17.3704
.(((((((((((...(((....))))))))))))))..	chr4:763962-764209(-)$1	1	177	215	19.3449
(.(((((((((((....(....)....)))))))))..	chr3:23851852-23852198(+)$1	1	27	65	15.4578
(((((...((((((.(((....)))..)))))).))))	chr22:50050737-50050994(-)$1	1	111	149	14.2882
(((..(((((((...(((....)))..))))))).)))	chr16:23690942-23691246(+)$1	1	33	71	17.5391
..(.(((((((.(..(((...)))..).))))))).).	chr22:50013563-50013844(-)$1	1	151	189	13.2779
.....((((((((((.((....))))))))))))))))	chr16:1362387-1362694(+)$1	1	221	259	13.3283
)))))))(((((((((((....)))))))))))...((	chr1:200589528-200589859(-)$1	1	87	125	14.0931
(((.(((((((.((((((....))).))).))))).))	chr9:138824937-138825218(-)$1	1	120	158	13.6590
((((((((((((((((......)))....))).)))))	chr8:144674992-144675264(-)$1	1	59	97	15.5497
....(((((((....(.(....).)...)))))))..)	chr3:49050061-49050364(+)$1	1	136	174	14.8969
(....((.(((...(.((....)).).))).))....)	chr15:34671239-34671502(-)$1	1	52	90	13.2762
.((((.(((((((.((((...)))).)))))))...))	chr19:54970742-54971012(+)$1	1	137	175	13.1764
(...(((.((.(((((((....))).)))).)))))..	chr7:102036324-102036647(+)$1	1	234	272	13.6570
.(((((((.((((((((((...))))))))))..))))	chr16:1413478-1413809(-)$1	1	222	260	14.8014
((((...((((....(((....))).))))..))))))	chr1:155531896-155532226(-)$1	1	249	287	15.5868
((((.(.(((((((.(((...)))..))))))).).))	chr7:148580485-148580787(-)$1	1	191	229	14.0532
).))))))))).)).)))....))).)).)))))))))	chr15:80214902-80215226(-)$1	1	218	256	12.8628
.)))))((((((.(.(((...)))).))))))((((((	chr16:1428929-1429205(-)$1	1	37	75	13.0251
((((((((((((.(.(((....)))..).)))..))))	chr12:133345649-133346006(-)$1	1	264	302	17.4753
(.((((((.((.(..(((....)))..).)))))))))	chr1:228270791-228271037(+)$1	1	58	96	14.5223
((((((..(((....(((....)))...))).)))..)	chr3:49050189-49050477(+)$1	1	108	146	16.6284
.)))(((.(((.((..(((...)))...)).))).)))	chr5:138629678-138629996(+)$1	1	220	258	14.0642
((((((((((((((((((....)))))))))))))...	chr8:101962655-101962915(-)$1	1	51	89	16.1674
(((((((((((((.((((....)))))))))..)))))	chr1:171750759-171751188(+)$1	1	132	170	13.0935
(((((.((.(((((((.(....).))))))))))))))	chr4:1945740-1946006(+)$1	1	52	90	14.2297
))(((((((.((((((((....).)))).)).).))))	chr3:33481531-33481868(-)$1	1	166	204	12.9575
.(((((((...(..((((....))))..)..)))))))	chr5:179248427-179248714(+)$1	1	183	221	14.0946
.(((((..(((....(((....)))....))).)))))	chr11:10529792-10530042(-)$1	1	174	212	15.5908
)))))).))(((((.(((....))).)))))((.(.((	chr3:195635566-195635869(-)$1	1	82	120	12.6128
...(.(((((((((((......).)))))))))).)..	chr19:7978265-7978568(+)$1	1	144	182	15.5079
.(((((.....(((.(((....))).)))...))))))	chr20:62331495-62331763(-)$1	1	196	234	13.9015
(((.(((((((.((((((....))).))).))))).))	chr9:138824905-138825137(-)$1	1	39	77	13.6590
(.((((...(((((((((....))).))))))...)))	chr15:34671361-34671607(-)$1	1	197	235	13.6337
(((((((.((((.(.(((....)))))))).)))))))	chr2:3627981-3628314(+)$1	1	215	253	15.4978
(.((((((.(((..((((....))))..))).))))))	chr15:34817625-34817866(-)$1	1	26	64	13.1160
(((((...((((((((((....))))))))))))))))	chr12:109124026-109124319(-)$1	1	197	235	17.4998
(((.((((((((((.(((....))).)).))).)))))	chr6:31638707-31638987(+)$1	1	23	61	14.0046
((.(((...((((..(((....)))..))))...))).	chr9:126691945-126692268(-)$1	1	116	154	15.3123
...(((.((((.((.(((....)))..)).).))).))	chr20:62331326-62331602(-)$1	1	0	38	12.9434
((...(((((((..(((.....)))..)))))))))))	chr14:104163940-104164216(+)$1	1	94	132	13.7658
((((((((((((((((((....)))))))))))))).)	chr16:2138719-2139069(-)$1	1	166	204	16.7398
.((((.(((((((.((((...)))).)))))))...))	chr19:54970812-54971104(+)$1	1	67	105	13.1764
(((.(((((((((..(((....)))...)).)))))))	chr21:47610630-47610942(-)$1	1	116	154	16.8167
.(((...((((((((((.....))))))))))...)))	chr19:50168401-50168663(-)$1	1	124	162	14.5124
..(((((((((((..((((...))))..))))))))))	chr5:139038984-139039314(+)$1	1	250	288	14.2509
(((..((((..((..(((....))).))..))))..))	chr11:66394406-66394698(+)$1	1	26	64	13.4462
..(((((((.((..((((....))))..))))))))))	chr1:23697607-23697993(+)$1	1	248	286	14.2843
.(((((((((((..(((.....))).)))))))))))(	chr18:3451868-3452127(+)$1	1	91	129	15.0748
.((((.((((.....(((....)))....))))..)))	chr16:89663327-89663600(+)$1	1	196	234	13.3333

#PSSM
: : 0.14	e : 0.12	i : 0.10	c : 0.08	g : 0.07	# : 0.07	! : 0.07	d : 0.05	= : 0.03	b : 0.03	f : 0.03	" : 0.03	& : 0.01	) : 0.01	a : 0.01	q : 0.01	] : 0.01	D : 0.01	h : 0.01	
e : 0.16	c : 0.14	i : 0.10	g : 0.08	d : 0.08	# : 0.07	= : 0.07	[ : 0.07	: : 0.05	" : 0.03	f : 0.03	& : 0.01	) : 0.01	] : 0.01	h : 0.01	
e : 0.16	g : 0.12	i : 0.12	c : 0.12	= : 0.08	d : 0.07	f : 0.07	# : 0.05	" : 0.05	b : 0.01	a : 0.01	& : 0.01	) : 0.01	[ : 0.01	: : 0.01	h : 0.01	
g : 0.14	c : 0.14	i : 0.12	e : 0.10	= : 0.10	[ : 0.08	d : 0.07	f : 0.05	! : 0.03	" : 0.03	b : 0.01	& : 0.01	) : 0.01	# : 0.01	a : 0.01	
g : 0.17	i : 0.14	= : 0.12	e : 0.10	c : 0.10	d : 0.07	f : 0.05	[ : 0.05	" : 0.05	! : 0.03	b : 0.03	& : 0.01	# : 0.01	
g : 0.19	= : 0.16	c : 0.12	[ : 0.10	i : 0.10	" : 0.07	e : 0.07	f : 0.05	b : 0.05	d : 0.03	a : 0.01	
g : 0.23	= : 0.16	i : 0.10	" : 0.10	f : 0.07	e : 0.07	c : 0.05	b : 0.03	[ : 0.03	! : 0.03	d : 0.03	a : 0.01	] : 0.01	$ : 0.01	
g : 0.23	= : 0.19	[ : 0.08	i : 0.08	f : 0.07	e : 0.07	" : 0.07	d : 0.05	c : 0.03	! : 0.03	b : 0.03	$ : 0.01	
= : 0.21	g : 0.19	c : 0.10	[ : 0.08	e : 0.08	i : 0.07	d : 0.07	f : 0.05	" : 0.05	b : 0.03	$ : 0.01	
= : 0.23	c : 0.17	g : 0.17	e : 0.08	f : 0.07	d : 0.07	i : 0.05	b : 0.03	[ : 0.03	" : 0.01	$ : 0.01	! : 0.01	
= : 0.21	c : 0.17	g : 0.16	e : 0.08	$ : 0.05	i : 0.05	f : 0.05	d : 0.05	[ : 0.03	b : 0.03	a : 0.03	" : 0.01	! : 0.01	
= : 0.21	[ : 0.12	c : 0.10	g : 0.10	# : 0.07	b : 0.07	f : 0.05	d : 0.05	a : 0.03	$ : 0.03	i : 0.03	e : 0.03	! : 0.01	" : 0.01	] : 0.01	
= : 0.17	b : 0.12	! : 0.10	[ : 0.08	c : 0.07	# : 0.07	g : 0.07	a : 0.05	" : 0.05	$ : 0.03	i : 0.03	f : 0.03	d : 0.03	e : 0.03	
! : 0.19	= : 0.16	c : 0.10	# : 0.08	a : 0.07	[ : 0.07	b : 0.07	" : 0.05	$ : 0.03	f : 0.03	d : 0.03	g : 0.03	i : 0.01	e : 0.01	
[ : 0.19	d : 0.16	= : 0.14	c : 0.12	! : 0.12	# : 0.08	" : 0.05	$ : 0.03	a : 0.01	] : 0.01	g : 0.01	f : 0.01	
c : 0.58	d : 0.16	= : 0.10	[ : 0.03	a : 0.03	" : 0.01	# : 0.01	! : 0.01	g : 0.01	
c : 0.57	d : 0.16	= : 0.10	o : 0.05	b : 0.03	[ : 0.03	" : 0.01	# : 0.01	
c : 0.53	d : 0.14	a : 0.08	= : 0.08	o : 0.05	n : 0.05	b : 0.03	
m : 0.71	l : 0.08	o : 0.05	n : 0.05	c : 0.03	= : 0.01	4 : 0.01	d : 0.01	
m : 0.71	l : 0.16	o : 0.05	n : 0.05	4 : 0.01	
m : 0.71	l : 0.16	o : 0.05	n : 0.05	4 : 0.01	
m : 0.71	l : 0.07	o : 0.05	c : 0.05	n : 0.05	d : 0.03	4 : 0.01	
c : 0.60	d : 0.14	a : 0.10	= : 0.10	b : 0.03	
c : 0.60	d : 0.14	= : 0.10	] : 0.07	b : 0.03	2 : 0.01	4 : 0.01	
c : 0.55	d : 0.16	= : 0.14	2 : 0.05	a : 0.03	4 : 0.01	] : 0.01	g : 0.01	
] : 0.30	2 : 0.17	= : 0.17	d : 0.12	4 : 0.07	3 : 0.07	a : 0.03	6 : 0.01	g : 0.01	
2 : 0.21	= : 0.19	4 : 0.07	3 : 0.07	g : 0.07	d : 0.07	a : 0.05	e : 0.05	c : 0.05	b : 0.05	f : 0.03	6 : 0.01	i : 0.01	] : 0.01	
= : 0.19	g : 0.10	c : 0.08	d : 0.08	3 : 0.07	b : 0.07	2 : 0.07	] : 0.05	e : 0.05	f : 0.05	4 : 0.05	i : 0.03	a : 0.03	6 : 0.01	
= : 0.21	c : 0.14	g : 0.14	] : 0.08	d : 0.07	b : 0.07	e : 0.05	f : 0.05	4 : 0.05	a : 0.03	i : 0.03	6 : 0.01	2 : 0.01	
= : 0.21	c : 0.16	g : 0.14	d : 0.08	b : 0.08	] : 0.07	e : 0.05	i : 0.05	f : 0.05	2 : 0.03	6 : 0.01	3 : 0.01	
= : 0.21	g : 0.16	c : 0.12	] : 0.10	e : 0.08	f : 0.07	i : 0.05	d : 0.05	2 : 0.03	b : 0.03	6 : 0.01	3 : 0.01	a : 0.01	
= : 0.21	g : 0.21	c : 0.10	f : 0.08	i : 0.07	b : 0.07	] : 0.07	e : 0.03	2 : 0.03	3 : 0.03	d : 0.03	a : 0.01	
g : 0.23	= : 0.17	i : 0.08	c : 0.07	f : 0.07	] : 0.07	b : 0.07	e : 0.05	2 : 0.05	3 : 0.05	d : 0.03	a : 0.01	
= : 0.19	g : 0.17	i : 0.12	c : 0.08	e : 0.08	3 : 0.08	f : 0.05	] : 0.05	2 : 0.05	: : 0.01	4 : 0.01	[ : 0.01	d : 0.01	
g : 0.19	= : 0.16	i : 0.14	e : 0.10	c : 0.08	3 : 0.07	f : 0.05	] : 0.05	a : 0.03	2 : 0.03	: : 0.01	4 : 0.01	d : 0.01	
g : 0.16	= : 0.14	i : 0.12	c : 0.10	e : 0.08	] : 0.08	f : 0.05	2 : 0.05	d : 0.05	3 : 0.03	: : 0.01	4 : 0.01	> : 0.01	[ : 0.01	a : 0.01	
g : 0.17	c : 0.14	d : 0.10	i : 0.10	= : 0.08	e : 0.08	2 : 0.07	f : 0.05	b : 0.03	3 : 0.03	6 : 0.01	a : 0.01	4 : 0.01	> : 0.01	] : 0.01	
g : 0.17	d : 0.14	c : 0.12	i : 0.10	= : 0.07	e : 0.07	b : 0.07	f : 0.05	] : 0.03	2 : 0.03	3 : 0.03	6 : 0.01	: : 0.01	> : 0.01	C : 0.01	

#score	820.353767170756
#seq	56
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_UTR_m3_run1.txt

#BEAR
BB}A}HHHHHHH	chr22:20004105-20004395(-)$1	290	273	285	8.3483
FFZZZGGGGGGG	chr19:13250242-13250501(+)$1	259	147	159	8.5556
__AYYGGGGGGG	chr6:86352567-86352820(-)$1	253	204	216	9.2942
CCCYYIIIIIII	chr19:54971699-54971951(+)$1	252	207	219	7.0433
A~~~~FFFFFF:	chr20:1165127-1165384(-)$1	257	223	235	6.8600
B}CCCFFFFFFY	chr2:97525789-97526033(-)$1	244	86	98	5.7282
EEEEEHHHHHHH	chr7:5569465-5569798(-)$1	333	164	176	8.1675
EEEYYFFFFFFY	chr17:8076704-8076926(-)$1	222	199	211	6.6758
b:BB}GGGGGGG	chr2:200323096-200323381(-)$1	285	178	190	8.5546
CCCYYGGGGGGG	chr11:122929945-122930149(-)$1	204	97	109	9.7836
CCCYYGGGGGGG	chr19:1881804-1882101(-)$1	297	220	232	9.7836
EEEEE}GGGGGG	chr6:7107966-7108225(+)$1	259	246	258	8.0734
CDDDDGGGGGGG	chrX:153589595-153589864(-)$1	269	250	262	8.3313
DDDDA{HHHHHH	chr17:80231340-80231633(-)$1	293	21	33	6.9071
CCBB}HHHHHHH	chr22:20068093-20068356(+)$1	263	130	142	8.8968
}DDDDGGGGGGG	chr17:27050622-27050848(+)$1	226	98	110	8.1395
CDDDDGGGGGGG	chr7:5569349-5569609(-)$1	260	229	241	8.3313
DDD::GGGGGGG	chr19:2425723-2425995(-)$1	272	44	56	7.6292
CCCYYFFFFFF}	chr22:50016658-50016910(-)$1	252	217	229	7.5335
bbAYYGGGGGGG	chr7:150069982-150070222(+)$1	240	196	208	8.3777
:::BB{GGGGGG	chr19:18547567-18547863(-)$1	296	2	14	7.2787
C{CCC{FFFFFF	chrX:152954103-152954376(+)$1	273	133	145	5.8667
YYBB}HHHHHHH	chr12:7052905-7053139(+)$1	234	213	225	8.5804
:::::GGGGGGG	chr19:2425550-2425840(-)$1	290	11	23	6.8532
DDDD}HHHHHHH	chr19:59056282-59056528(+)$1	246	192	204	8.0811
:::::GGGGGGG	chr19:1416432-1416664(+)$1	232	0	12	6.8532
B{CCCGGGGGGG	chr22:19710374-19710612(+)$1	238	80	92	8.1558
DD{BBGGGGGGG	chr5:138629498-138629745(+)$1	247	125	137	8.1782
FFFF}FFFFFFB	chr6:167369854-167370160(-)$1	306	293	305	6.0505
D::::GGGGGGG	chr12:112036737-112037003(-)$1	266	114	126	7.0974
CCCYYGGGGGGG	chr11:122929971-122930176(-)$1	205	124	136	9.7836
::BB}GGGGGGG	chr3:184079460-184079790(+)$1	330	316	328	8.7619
@@BB}FFFFFF:	chr22:50018397-50018654(-)$1	257	203	215	6.0567
CCCYYGGGGGGG	chr11:122929976-122930183(-)$1	207	131	143	9.7836
CCCYYGGGGGGG	chr11:122929983-122930200(-)$1	217	148	160	9.7836
FFFFFHHHHHHH	chr8:101962963-101963244(-)$1	281	243	255	7.0893
FFFFFFFFFFFF	chr19:1652298-1652554(-)$1	256	239	251	5.8569
EEEE}GGGGGGG	chr17:8076672-8076904(-)$1	232	132	144	9.2366

#otherMatches

#Seq PSSM
CUGCGCUCCAGG	chr22:20004105-20004395(-)$1	290	273	285	8.3483
UGUGGGUCCUGU	chr19:13250242-13250501(+)$1	259	147	159	8.5556
UACAACAGCUCC	chr6:86352567-86352820(-)$1	253	204	216	9.2942
GCCCGCCCGCCU	chr19:54971699-54971951(+)$1	252	207	219	7.0433
GGGGAGUGUGUG	chr20:1165127-1165384(-)$1	257	223	235	6.8600
UUGGAGCUAUGA	chr2:97525789-97526033(-)$1	244	86	98	5.7282
GCGGCUCCCGGG	chr7:5569465-5569798(-)$1	333	164	176	8.1675
UAUCCACAAACA	chr17:8076704-8076926(-)$1	222	199	211	6.6758
CUGGCCGCGGCC	chr2:200323096-200323381(-)$1	285	178	190	8.5546
gucugagcgaGU	chr11:122929945-122930149(-)$1	204	97	109	9.7836
GGAUGCCCCGCC	chr19:1881804-1882101(-)$1	297	220	232	9.7836
UUUGCAUCUCUC	chr6:7107966-7108225(+)$1	259	246	258	8.0734
GUACCCCAUCUU	chrX:153589595-153589864(-)$1	269	250	262	8.3313
gccccgccccgc	chr17:80231340-80231633(-)$1	293	21	33	6.9071
GUGCUCGCCUGG	chr22:20068093-20068356(+)$1	263	130	142	8.8968
AGCGACCAAAGC	chr17:27050622-27050848(+)$1	226	98	110	8.1395
ccccuggcggcc	chr7:5569349-5569609(-)$1	260	229	241	8.3313
GCAGGCCAGGGG	chr19:2425723-2425995(-)$1	272	44	56	7.6292
GUAUUGGGGAUC	chr22:50016658-50016910(-)$1	252	217	229	7.5335
GUGGGCCCUGCU	chr7:150069982-150070222(+)$1	240	196	208	8.3777
GACGCCGAGGGC	chr19:18547567-18547863(-)$1	296	2	14	7.2787
GUGGGCUUGGGC	chrX:152954103-152954376(+)$1	273	133	145	5.8667
UUGUAAGCUUGG	chr12:7052905-7053139(+)$1	234	213	225	8.5804
ccccugggagcc	chr19:2425550-2425840(-)$1	290	11	23	6.8532
AGUGAUCGGUGC	chr19:59056282-59056528(+)$1	246	192	204	8.0811
UGAAUGCGUGUC	chr19:1416432-1416664(+)$1	232	0	12	6.8532
CGAGGCGGGCCG	chr22:19710374-19710612(+)$1	238	80	92	8.1558
GCCUCCCUCCGC	chr5:138629498-138629745(+)$1	247	125	137	8.1782
CGGCGCGGGGCC	chr6:167369854-167370160(-)$1	306	293	305	6.0505
GCUCCCGGCUGU	chr12:112036737-112037003(-)$1	266	114	126	7.0974
gucugagcgaGU	chr11:122929971-122930176(-)$1	205	124	136	9.7836
UAGGAGCCGCCU	chr3:184079460-184079790(+)$1	330	316	328	8.7619
AACUGGGCAGUG	chr22:50018397-50018654(-)$1	257	203	215	6.0567
gucugagcgaGU	chr11:122929976-122930183(-)$1	207	131	143	9.7836
gucugagcgaGU	chr11:122929983-122930200(-)$1	217	148	160	9.7836
GUGGGAGAGCGG	chr8:101962963-101963244(-)$1	281	243	255	7.0893
ccggccgcgccc	chr19:1652298-1652554(-)$1	256	239	251	5.8569
uuCUUUCUGACG	chr17:8076672-8076904(-)$1	232	132	144	9.2366

#DB
)).).)))))))	chr22:20004105-20004395(-)$1	1	273	285	8.3483
))...)))))))	chr19:13250242-13250501(+)$1	1	147	159	8.5556
..)..)))))))	chr6:86352567-86352820(-)$1	1	204	216	9.2942
)))..)))))))	chr19:54971699-54971951(+)$1	1	207	219	7.0433
)....)))))).	chr20:1165127-1165384(-)$1	1	223	235	6.8600
).))))))))).	chr2:97525789-97526033(-)$1	1	86	98	5.7282
))))))))))))	chr7:5569465-5569798(-)$1	1	164	176	8.1675
)))..)))))).	chr17:8076704-8076926(-)$1	1	199	211	6.6758
).)).)))))))	chr2:200323096-200323381(-)$1	1	178	190	8.5546
)))..)))))))	chr11:122929945-122930149(-)$1	1	97	109	9.7836
)))..)))))))	chr19:1881804-1882101(-)$1	1	220	232	9.7836
))))).))))))	chr6:7107966-7108225(+)$1	1	246	258	8.0734
))))))))))))	chrX:153589595-153589864(-)$1	1	250	262	8.3313
(((((.((((((	chr17:80231340-80231633(-)$1	1	21	33	6.9071
)))).)))))))	chr22:20068093-20068356(+)$1	1	130	142	8.8968
.)))))))))))	chr17:27050622-27050848(+)$1	1	98	110	8.1395
))))))))))))	chr7:5569349-5569609(-)$1	1	229	241	8.3313
(((..(((((((	chr19:2425723-2425995(-)$1	1	44	56	7.6292
)))..)))))).	chr22:50016658-50016910(-)$1	1	217	229	7.5335
)))..)))))))	chr7:150069982-150070222(+)$1	1	196	208	8.3777
...((.((((((	chr19:18547567-18547863(-)$1	1	2	14	7.2787
(.(((.((((((	chrX:152954103-152954376(+)$1	1	133	145	5.8667
..)).)))))))	chr12:7052905-7053139(+)$1	1	213	225	8.5804
.....(((((((	chr19:2425550-2425840(-)$1	1	11	23	6.8532
)))).)))))))	chr19:59056282-59056528(+)$1	1	192	204	8.0811
.....(((((((	chr19:1416432-1416664(+)$1	1	0	12	6.8532
(.((((((((((	chr22:19710374-19710612(+)$1	1	80	92	8.1558
((.(((((((((	chr5:138629498-138629745(+)$1	1	125	137	8.1782
)))).)))))))	chr6:167369854-167370160(-)$1	1	293	305	6.0505
)....(((((((	chr12:112036737-112037003(-)$1	1	114	126	7.0974
)))..)))))))	chr11:122929971-122930176(-)$1	1	124	136	9.7836
..)).)))))))	chr3:184079460-184079790(+)$1	1	316	328	8.7619
..)).)))))).	chr22:50018397-50018654(-)$1	1	203	215	6.0567
)))..)))))))	chr11:122929976-122930183(-)$1	1	131	143	9.7836
)))..)))))))	chr11:122929983-122930200(-)$1	1	148	160	9.7836
))))))))))))	chr8:101962963-101963244(-)$1	1	243	255	7.0893
))))))))))))	chr19:1652298-1652554(-)$1	1	239	251	5.8569
)))).)))))))	chr17:8076672-8076904(-)$1	1	132	144	9.2366

#PSSM
C : 0.28	D : 0.13	F : 0.10	E : 0.10	: : 0.10	B : 0.07	b : 0.05	_ : 0.02	A : 0.02	} : 0.02	Y : 0.02	@ : 0.02	
C : 0.21	D : 0.18	: : 0.15	F : 0.10	E : 0.10	{ : 0.05	B : 0.02	_ : 0.02	~ : 0.02	} : 0.02	b : 0.02	Y : 0.02	@ : 0.02	
C : 0.26	D : 0.15	B : 0.13	E : 0.10	: : 0.10	F : 0.07	A : 0.05	} : 0.02	Z : 0.02	~ : 0.02	{ : 0.02	
Y : 0.26	B : 0.18	D : 0.13	: : 0.10	C : 0.07	E : 0.07	F : 0.07	A : 0.02	Z : 0.02	~ : 0.02	
Y : 0.26	} : 0.23	: : 0.10	C : 0.07	D : 0.07	E : 0.05	B : 0.05	F : 0.05	Z : 0.02	~ : 0.02	A : 0.02	
G : 0.52	F : 0.18	H : 0.15	{ : 0.07	I : 0.02	} : 0.02	
G : 0.57	F : 0.21	H : 0.18	I : 0.02	
G : 0.57	F : 0.21	H : 0.18	I : 0.02	
G : 0.57	F : 0.21	H : 0.18	I : 0.02	
G : 0.57	F : 0.21	H : 0.18	I : 0.02	
G : 0.57	F : 0.21	H : 0.18	I : 0.02	
G : 0.57	H : 0.18	: : 0.05	Y : 0.05	F : 0.05	I : 0.02	} : 0.02	B : 0.02	

#score	300.3639973744236
#seq	38
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_UTR_m1_run1.txt

#BEAR
!!dddd[a!!bb!!ddddoooooodddd22bb4444a]dd	chr7:935036-935287(+)$1	251	141	181	14.1259
============="""cccooooooccc4444========	chr7:100171562-100171820(-)$1	258	56	96	19.1794
!!dddd[ggggggg!!aaooooooa]a22gggggggdddd	chr17:62501969-62502234(-)$1	265	106	146	14.5265
eeeccc[ccc[bbccccccnnnnnccc]ccc22bb]cccc	chr19:18546275-18546521(-)$1	246	24	64	14.1785
==================oooooo================	chr7:123180736-123180989(-)$1	253	20	60	16.9702
ggggg$$$$$ccc"""cccnnnnnccc333ccc333gggg	chr17:80850926-80851219(+)$1	293	169	209	19.6701
eeeee[ccc[ccc[bb[bbnnnnnbb]bb]ccc]ccc]ee	chr19:41889442-41889750(+)$1	308	205	245	13.4349
""=========="""fffffflllffffff]=========	chr17:73823401-73823770(-)$1	369	70	110	14.3326
%iiiiiiiii!!a"""ddddllldddd4444a22iiiiii	chr7:100171055-100171334(-)$1	279	100	140	16.2693
===========[ccc!!bboooooobb22ccc]=======	chr2:175430836-175431088(+)$1	252	206	246	16.9953
eeeee"""ffffff"""bbnnnnnbb4444ffffff22ee	chr1:184659688-184659942(-)$1	254	145	185	14.4666
ddggggggg[ccc[cccrrrrrrrrrcccccc]ggggggg	chr3:50367443-50367737(-)$1	294	174	214	12.4765
fffff[a[cccccc[ccc[ammmmaccc]ccc]cccafff	chr19:798402-798726(+)$1	324	146	186	13.1924
gggggg[a[a!!a!!cccooooooccc22a22a]a]gggg	chr12:56632208-56632445(-)$1	237	81	121	17.2345
Ha[ccc[iiiiiiiii!!ccclllccc22iiiiiiiii]c	chr7:5569488-5569794(-)$1	306	249	289	14.8898
eeeeccc"""bb####cccnnnnnccc]bb]ccc]eeeee	chr1:1322014-1322278(-)$1	264	193	233	15.6970
eccc[ccc[ccc!!eeeeennnnneeeee22ccc]ccccc	chr1:36789200-36789492(+)$1	292	125	165	13.5747
[ggggggg[==========mmmm==========22ggggg	chr11:62392224-62392471(-)$1	247	67	107	14.3158
####ccc####ccc"""bbmmmmbb333ccc4444ccc33	chr19:1472443-1472696(-)$1	253	53	93	14.4884
eee!!eeeee!!a"""cccnnnnnccc333a22eeeee22	chr3:50156031-50156330(+)$1	299	22	62	16.4559
[dddd!!cccccc"""cccbblllbb]ccc22ccc]ccc3	chr22:50685256-50685507(-)$1	251	201	241	13.5371
cc[bb!!a!!ccc!!ddddnnnnndddd]ccc22a]bbcc	chr19:3053637-3053902(-)$1	265	52	92	15.9389
hhhhh!!ggggggg!!cccnnnnnccc22ggggggg6666	chr17:8062526-8062774(-)$1	248	168	208	14.7719
ggggggg####ccc[cccnnnnncccccc666666ggggg	chr7:930551-930797(+)$1	246	8	48	13.3620
hhhhh####bb[a"""ccc[aooooooa]ccc333a]bb4	chr18:8639084-8639357(+)$1	273	211	251	14.1033
bb[ccc[iiiiiiiii!!ccclllccc22iiiiiiiii]c	chr7:5569445-5569688(-)$1	243	143	183	15.0434
gggggg!!bb!!cccrrrrrrrrrccc333bb22gggggg	chr16:89977515-89977774(+)$1	259	130	170	13.5338
b[bb[bb!!ccc"""a[aooooooa]a4444ccc22bb]b	chr19:49611416-49611734(+)$1	318	92	132	14.8518
ddd:iiiiiiiii"""ddddmmmmdddd4444iiiiiiii	chr20:33432769-33433027(-)$1	258	134	174	14.0063
!!a==========####bbmmmmbb4444==========]	chr15:91463396-91463693(+)$1	297	93	133	16.2131
ccc[bb[bbccc[bb!!cccmmmmccc333bb]ccc]bb]	chr19:49605902-49606145(+)$1	243	89	129	12.9546
iiiiiiii"""ccc[aooooooa]ccc4444iiiiiiiii	chr6:26216336-26216572(-)$1	236	111	151	16.2300
c[dddd[dddd[ccc[cccnnnnnccc]cccdddd333dd	chr11:67202551-67202814(+)$1	263	118	158	14.3339
eeeeeeeee[dddd!!cccnnnnnccc22dddd]eeeee3	chr12:123467264-123467527(+)$1	263	40	80	14.4503
fff[ccc"""eeeee!!ccclllccc22eeeee333cccf	chr8:28921335-28921583(+)$1	248	200	240	13.2155
ddd"""eeeeeccc[ddddnnnnndddd22ccc]eeeee6	chr2:232574636-232574895(+)$1	259	76	116	13.4047
iiiii[dddd[ccc"""bbnnnnnbb333ccc22dddd33	chr7:1887649-1887897(-)$1	248	95	135	16.3177
fffff####ccc"""ddddmmmmdddd4444ccc4444ff	chr3:196661290-196661575(+)$1	285	210	250	14.4634
eeeee"""ffffff"""bbnnnnnbb4444ffffff22ee	chr1:184659665-184659888(-)$1	223	91	131	14.4666
ffffff####ccc[cccddddllldddd22ccc]ccc22f	chr1:32827583-32827856(-)$1	273	52	92	13.5602
:hhhhhhhh!!ccc!!cccnnnnnccc4444ccchhhhhh	chr8:145736620-145736859(-)$1	239	2	42	14.8676
===[bb!!dddd####cccooooooccc22dddd4444bb	chr16:1819416-1819790(+)$1	374	163	203	14.8921
e:ggggggg[dddd!!ccclllccc4444ddddggggggg	chr22:50357255-50357498(+)$1	243	59	99	12.9427
"""==========ffffffnnnnnffffff333=======	chr14:20917448-20917712(-)$1	264	73	113	15.2820
[ggggggg[dddd!!abboooooobb]a22dddd]ggggg	chr5:154136583-154136861(+)$1	278	64	104	14.5220
ffff!!bb"""ccc!!ddddmmmmdddd]ccc333bb22f	chr17:5346265-5346537(-)$1	272	42	82	13.0810
iiiiii[a[bb####ddddnnnnndddd333bb]aiiiii	chr16:89627196-89627424(+)$1	228	157	197	17.1335
ccc[dddd!!ccc!!ddddnnnnndddd]ccc]dddd]cc	chrX:151121738-151121990(-)$1	252	22	62	15.1138
ggg==========bb[cccnnnnnccc]bb]=========	chr1:16060981-16061226(+)$1	245	186	226	17.1690
d:dddd"""eeeee!!cccnnnnnccc22eeeee4444dd	chr6:26123453-26123701(-)$1	248	203	243	14.3997
%%%============ddddnnnnndddd22==========	chr16:67862303-67862563(-)$1	260	86	126	15.5664
""bba[a####eeeeebboooooobb333eeeee4444a]	chr14:23794566-23794800(+)$1	234	155	195	13.5289
ccc[dddd!!ccc!!ddddnnnnndddd]ccc]dddd]cc	chrX:151121833-151122178(-)$1	345	210	250	15.1138
gg[a[cccccc!!bb"""ccclllccc4444bb22ccc]c	chr11:62382708-62383000(-)$1	292	141	181	14.4271

#otherMatches

#Seq PSSM
AUGCCGGCGCGUGUCUGUUUCUGUGCGGCGGCUCAGGGUG	chr7:935036-935287(+)$1	251	141	181	14.1259
GCACCCUUGGCCUGCCGGCCUGGCUGCCUCUGGGGUCGAG	chr7:100171562-100171820(-)$1	258	56	96	19.1794
GGCCGGCGGGGGCUUUGCGGCUUGGACUUGGCCUUUCCGG	chr17:62501969-62502234(-)$1	265	106	146	14.5265
CUGCACUCCAGGUGGUCAUCAAGUAUGUGCCGUACGUGGG	chr19:18546275-18546521(-)$1	246	24	64	14.1785
gugugugugugugugugugugugugCACGCGCAUGCGCAC	chr7:123180736-123180989(-)$1	253	20	60	16.9702
GACCUGAAGACCGUUUACGGUGUAUGUUUUCGGGAAAGGU	chr17:80850926-80851219(+)$1	293	169	209	19.6701
UCCAGGGGGCAGGGGCCGCCUCCCGCCGUGCCUUCCUGCU	chr19:41889442-41889750(+)$1	308	205	245	13.4349
CUCCUGGCCUUCCUGUUCCAGCCACUGGGGUGGGGGCCAG	chr17:73823401-73823770(-)$1	369	70	110	14.3326
ACCCCCAUGGGACAGGUGAGGGGCUCGGACGGAGCCGUGG	chr7:100171055-100171334(-)$1	279	100	140	16.2693
AUUUUUCCUUUCUUGUUGACAUUCUUCUUCAAUGGAGGAA	chr2:175430836-175431088(+)$1	252	206	246	16.9953
UUGGAUUUUAUUGUUUGGUGAUAAAUGUAUACAAUAUUUC	chr1:184659688-184659942(-)$1	254	145	185	14.4666
CAGGCAUUGAGGAAGAGUCUUGGUUUCUCUCUACAGUGCC	chr3:50367443-50367737(-)$1	294	174	214	12.4765
GGUCCUGCAGACGGCGAGACGAGGGCUCCCCGCUCUCGGA	chr19:798402-798726(+)$1	324	146	186	13.1924
GGGGGUGGGUGGGAGGGGAGGGUGCCUGGCAGAGCAGCCC	chr12:56632208-56632445(-)$1	237	81	121	17.2345
CUGUUUGAACCGGGCGGAGGCGGGGCUGGCGCCCGGUUGG	chr7:5569488-5569794(-)$1	306	249	289	14.8898
AGCUAUGUAUGAAAACUCAGAACUUGAAUCCCGUCAGCUU	chr1:1322014-1322278(-)$1	264	193	233	15.6970
cgggaggagggAGAGCCCGGCCCGCGGGCCGUCCGUCCCC	chr1:36789200-36789492(+)$1	292	125	165	13.5747
UGGGGAGUCGGGGAAUAUUUGUGGGUAUUUUUUUUACUUC	chr11:62392224-62392471(-)$1	247	67	107	14.3158
GGCAGGGGAUGGAGAAGGCGAAAGUGAGCUCAGGACUCGG	chr19:1472443-1472696(-)$1	253	53	93	14.4884
CUUAUGUGGGUUGCCUGGUGAAUGGCCUUCCUUCCCGCCA	chr3:50156031-50156330(+)$1	299	22	62	16.4559
GAGGUAAGCCUCACUUGGCCAUCCUGAGCCUCUGACGGCA	chr22:50685256-50685507(-)$1	251	201	241	13.5371
CCACCAGGAGGAUGAUGGCGAGAAGUCGGAUUAGCAGGGG	chr19:3053637-3053902(-)$1	265	52	92	15.9389
GCUGGAGGUGGGGGUGCUGUGUUUUAGACCCCCCAUAUUA	chr17:8062526-8062774(-)$1	248	168	208	14.7719
UGCAGAACAAAACUAUUGUGAGUCGAGGUAUCAUUUUCUG	chr7:930551-930797(+)$1	246	8	48	13.3620
GUGUGUCUUGAGUGUUGUGGUAUGAAAAGCAUUGUGGUCU	chr18:8639084-8639357(+)$1	273	211	251	14.1033
CUGUUUGAACCGGGCGGAGGCGGGGCUGGCGCCCGGUUGG	chr7:5569445-5569688(-)$1	243	143	183	15.0434
AGCGUCCGCAGAGGUGACCGAAAAGCCGUAUGAUGAUGUU	chr16:89977515-89977774(+)$1	259	130	170	13.5338
gaccgcgagcacaaacggggggagcggggcagugagcggg	chr19:49611416-49611734(+)$1	318	92	132	14.8518
CCAGGCAGGCAGGACCUUGAGGAAUCAGACUAUCUGUCUG	chr20:33432769-33433027(-)$1	258	134	174	14.0063
GAGUGACUCUGGGAGGACAGGGGUGGGGACCCAGAGUUAG	chr15:91463396-91463693(+)$1	297	93	133	16.2131
CUUGGGGUGUGGGAGGGACCAAGGGGUAGGCUGCUAGCAG	chr19:49605902-49606145(+)$1	243	89	129	12.9546
GGCUCUUUUCAGAGCCACUCAAGUCUCACAUAAAGAGCUU	chr6:26216336-26216572(-)$1	236	111	151	16.2300
GAGCCCUGUCCCUGCGGCUGUGAGAGCAGCAGGACCCUGG	chr11:67202551-67202814(+)$1	263	118	158	14.3339
GGGUGCUGGUGGCCUUUCCCCCGUGGAUUGGUCUCUGGCC	chr12:123467264-123467527(+)$1	263	40	80	14.4503
GCCACUUGUACUCCUGGGGUGGGACUGAGGGAGGGAAAGG	chr8:28921335-28921583(+)$1	248	200	240	13.2155
GGGUGAGAACACCGUCCCCAGUGCGGGGCCUGGCUGUUCG	chr2:232574636-232574895(+)$1	259	76	116	13.4047
UUGUUGAGGGAGGGAGAGUGGCCUGCGGACCCAGCCCUGA	chr7:1887649-1887897(-)$1	248	95	135	16.3177
UAGAGAUUAUGAUCAUGUAAAAUUACAGUACUCAACCCUU	chr3:196661290-196661575(+)$1	285	210	250	14.4634
UUGGAUUUUAUUGUUUGGUGAUAAAUGUAUACAAUAUUUC	chr1:184659665-184659888(-)$1	223	91	131	14.4666
GUCCCCGAUUCUGGCCCGCGCUGAGUGCCAGGGGCGGCAG	chr1:32827583-32827856(-)$1	273	52	92	13.5602
UGGUGGGCCUGGCCACGGAAGAGCUCCUGCAGGUGGCCCG	chr8:145736620-145736859(-)$1	239	2	42	14.8676
UGGAGGAGUGGGCCCUGGAGUCCUGUCCCUCCCAGAAGCC	chr16:1819416-1819790(+)$1	374	163	203	14.8921
GUCUGCCUCUCCCAAGCCCCAGGGGACAGUGGGGAGGCAG	chr22:50357255-50357498(+)$1	243	59	99	12.9427
UCUAGGAAUCUGUUCCUGGAAUCCUCAGGGUAUACAGAUU	chr14:20917448-20917712(-)$1	264	73	113	15.2820
ggcccgcggcgcggcccgAGUGUGCGUGUGCGCGGCGCGG	chr5:154136583-154136861(+)$1	278	64	104	14.5220
ACACCACAUCUGGGCUUACAUUCUUGUAUCUUUUUUGGUG	chr17:5346265-5346537(-)$1	272	42	82	13.0810
GGCCGUAGGCAGCCAUGGCGCCCAGCCGGAAUGGCAUGGU	chr16:89627196-89627424(+)$1	228	157	197	17.1335
GACUGUGGAUCUCACUGGAAGCUAUCCAAGAGCCCACUGU	chrX:151121738-151121990(-)$1	252	22	62	15.1138
GGCCCUUCCCUAGAGUUUCGUCAAGAGCCUCCUGGGGAAG	chr1:16060981-16061226(+)$1	245	186	226	17.1690
aagcggccauuuugcuaacucggcguucccggaagaaacc	chr6:26123453-26123701(-)$1	248	203	243	14.3997
GAUAAAUAUUUCCAGCAUCUUUGUGAUGAUCUGGAGGUAU	chr16:67862303-67862563(-)$1	260	86	126	15.5664
UAUUCACUCUGGGGAUUCGCCAUGGACACGUCUCAACUGC	chr14:23794566-23794800(+)$1	234	155	195	13.5289
GACUGUGGAUCUCACUGGAAGCUAUCCAAGAGCCCACUGU	chrX:151121833-151122178(-)$1	345	210	250	15.1138
GCACUGGGGGGCUGGAGGAGCUGGGCUGGACCCUUCCCAC	chr11:62382708-62383000(-)$1	292	141	181	14.4271

#DB
..((((.(..((..((((......))))..))....).))	chr7:935036-935287(+)$1	1	141	181	14.1259
))(((((((((((...(((......)))....))))))))	chr7:100171562-100171820(-)$1	1	56	96	19.1794
..((((.(((((((..((......).)..)))))))))))	chr17:62501969-62502234(-)$1	1	106	146	14.5265
((((((.(((.((((((((.....))).)))..)).))))	chr19:18546275-18546521(-)$1	1	24	64	14.1785
((((((((((((((((((......))))))))))))))))	chr7:123180736-123180989(-)$1	1	20	60	16.9702
(((((.....(((...(((.....)))...)))...))))	chr17:80850926-80851219(+)$1	1	169	209	19.6701
(((((.(((.(((.((.((.....)).)).))).))).))	chr19:41889442-41889750(+)$1	1	205	245	13.4349
..((((((((((...((((((...)))))).)))))))))	chr17:73823401-73823770(-)$1	1	70	110	14.3326
.(((((((((..(...((((...))))....)..))))))	chr7:100171055-100171334(-)$1	1	100	140	16.2693
)((((((((((.(((..((......))..))).)))))))	chr2:175430836-175431088(+)$1	1	206	246	16.9953
(((((...((((((...((.....))....))))))..))	chr1:184659688-184659942(-)$1	1	145	185	14.4666
))(((((((.(((.(((.........)))))).)))))))	chr3:50367443-50367737(-)$1	1	174	214	12.4765
(((((.(.((((((.(((.(....)))).))).)))))))	chr19:798402-798726(+)$1	1	146	186	13.1924
((((((.(.(..(..(((......)))..)..).).))))	chr12:56632208-56632445(-)$1	1	81	121	17.2345
)(.(((.(((((((((..(((...)))..))))))))).)	chr7:5569488-5569794(-)$1	1	249	289	14.8898
(((((((...((....(((.....))).)).))).)))))	chr1:1322014-1322278(-)$1	1	193	233	15.6970
)(((.(((.(((..(((((.....)))))..))).)))))	chr1:36789200-36789492(+)$1	1	125	165	13.5747
.(((((((.((((((((((....))))))))))..)))))	chr11:62392224-62392471(-)$1	1	67	107	14.3158
....(((....(((...((....))...)))....)))..	chr19:1472443-1472696(-)$1	1	53	93	14.4884
(((..(((((..(...(((.....)))...)..)))))..	chr3:50156031-50156330(+)$1	1	22	62	16.4559
.((((..((((((...(((((...)).)))..))).))).	chr22:50685256-50685507(-)$1	1	201	241	13.5371
((.((..(..(((..((((.....)))).)))..).))))	chr19:3053637-3053902(-)$1	1	52	92	15.9389
(((((..(((((((..(((.....)))..)))))))....	chr17:8062526-8062774(-)$1	1	168	208	14.7719
(((((((....(((.(((.....))))))......)))))	chr7:930551-930797(+)$1	1	8	48	13.3620
(((((....((.(...(((.(......).)))...).)).	chr18:8639084-8639357(+)$1	1	211	251	14.1033
((.(((.(((((((((..(((...)))..))))))))).)	chr7:5569445-5569688(-)$1	1	143	183	15.0434
((((((..((..(((.........)))...))..))))))	chr16:89977515-89977774(+)$1	1	130	170	13.5338
(.((.((..(((...(.(......).)....)))..)).)	chr19:49611416-49611734(+)$1	1	92	132	14.8518
))).(((((((((...((((....))))....))))))))	chr20:33432769-33433027(-)$1	1	134	174	14.0063
..(((((((((((....((....))....)))))))))).	chr15:91463396-91463693(+)$1	1	93	133	16.2131
(((.((.(((((.((..(((....)))...)).))).)).	chr19:49605902-49606145(+)$1	1	89	129	12.9546
((((((((...(((.(......).)))....)))))))))	chr6:26216336-26216572(-)$1	1	111	151	16.2300
(.((((.((((.(((.(((.....))).)))))))...))	chr11:67202551-67202814(+)$1	1	118	158	14.3339
(((((((((.((((..(((.....)))..)))).))))).	chr12:123467264-123467527(+)$1	1	40	80	14.4503
(((.(((...(((((..(((...)))..)))))...))))	chr8:28921335-28921583(+)$1	1	200	240	13.2155
(((...((((((((.((((.....))))..))).))))).	chr2:232574636-232574895(+)$1	1	76	116	13.4047
(((((.((((.(((...((.....))...)))..))))..	chr7:1887649-1887897(-)$1	1	95	135	16.3177
(((((....(((...((((....))))....)))....))	chr3:196661290-196661575(+)$1	1	210	250	14.4634
(((((...((((((...((.....))....))))))..))	chr1:184659665-184659888(-)$1	1	91	131	14.4666
((((((....(((.(((((((...))))..))).)))..)	chr1:32827583-32827856(-)$1	1	52	92	13.5602
.((((((((..(((..(((.....)))....)))))))))	chr8:145736620-145736859(-)$1	1	2	42	14.8676
(((.((..((((....(((......)))..))))....))	chr16:1819416-1819790(+)$1	1	163	203	14.8921
).(((((((.((((..(((...)))....)))))))))))	chr22:50357255-50357498(+)$1	1	59	99	12.9427
...((((((((((((((((.....))))))...)))))))	chr14:20917448-20917712(-)$1	1	73	113	15.2820
.(((((((.((((..(((......)).)..)))).)))))	chr5:154136583-154136861(+)$1	1	64	104	14.5220
((((..((...(((..((((....)))).)))...))..)	chr17:5346265-5346537(-)$1	1	42	82	13.0810
((((((.(.((....((((.....))))...)).))))))	chr16:89627196-89627424(+)$1	1	157	197	17.1335
(((.((((..(((..((((.....)))).))).)))).))	chrX:151121738-151121990(-)$1	1	22	62	15.1138
)))((((((((((((.(((.....))).)).)))))))))	chr1:16060981-16061226(+)$1	1	186	226	17.1690
).((((...(((((..(((.....)))..)))))....))	chr6:26123453-26123701(-)$1	1	203	243	14.3997
...((((((((((((((((.....))))..))))))))))	chr16:67862303-67862563(-)$1	1	86	126	15.5664
..(((.(....(((((((......))...)))))....).	chr14:23794566-23794800(+)$1	1	155	195	13.5289
(((.((((..(((..((((.....)))).))).)))).))	chrX:151121833-151122178(-)$1	1	210	250	15.1138
((.(.((((((..((...(((...)))....))..))).)	chr11:62382708-62383000(-)$1	1	141	181	14.4271

#PSSM
e : 0.16	g : 0.11	f : 0.09	c : 0.09	= : 0.07	d : 0.07	! : 0.05	" : 0.05	[ : 0.05	i : 0.05	% : 0.03	h : 0.03	b : 0.03	H : 0.01	# : 0.01	: : 0.01	
g : 0.14	e : 0.12	f : 0.09	c : 0.09	= : 0.07	i : 0.07	d : 0.07	! : 0.05	" : 0.05	h : 0.05	[ : 0.03	: : 0.03	a : 0.01	# : 0.01	b : 0.01	% : 0.01	
g : 0.16	d : 0.12	e : 0.12	= : 0.09	f : 0.09	i : 0.07	[ : 0.07	c : 0.07	h : 0.05	b : 0.03	# : 0.01	a : 0.01	" : 0.01	% : 0.01	
= : 0.14	g : 0.14	d : 0.09	e : 0.09	[ : 0.09	c : 0.07	i : 0.07	f : 0.07	b : 0.05	h : 0.05	# : 0.01	! : 0.01	: : 0.01	" : 0.01	a : 0.01	
= : 0.14	g : 0.14	d : 0.12	c : 0.11	i : 0.09	e : 0.07	f : 0.05	[ : 0.05	b : 0.05	h : 0.05	! : 0.03	" : 0.01	a : 0.01	
= : 0.14	c : 0.14	g : 0.12	d : 0.11	[ : 0.07	i : 0.07	! : 0.07	" : 0.05	b : 0.05	e : 0.03	# : 0.03	$ : 0.01	f : 0.01	h : 0.01	
[ : 0.16	= : 0.14	c : 0.11	g : 0.09	! : 0.09	i : 0.05	" : 0.05	e : 0.05	# : 0.05	d : 0.05	a : 0.03	b : 0.03	$ : 0.01	h : 0.01	
= : 0.14	g : 0.11	# : 0.11	c : 0.09	i : 0.09	" : 0.09	a : 0.07	d : 0.07	e : 0.05	! : 0.05	b : 0.03	$ : 0.01	[ : 0.01	h : 0.01	
= : 0.14	# : 0.11	! : 0.09	c : 0.09	[ : 0.09	" : 0.09	g : 0.07	i : 0.07	e : 0.05	d : 0.05	f : 0.03	b : 0.03	$ : 0.01	h : 0.01	
= : 0.16	c : 0.14	! : 0.09	[ : 0.07	i : 0.07	" : 0.07	# : 0.07	d : 0.07	e : 0.05	b : 0.05	g : 0.03	f : 0.03	$ : 0.01	a : 0.01	
c : 0.25	= : 0.16	! : 0.09	d : 0.09	b : 0.07	i : 0.05	# : 0.05	e : 0.05	g : 0.03	[ : 0.03	f : 0.03	" : 0.03	
c : 0.37	= : 0.14	! : 0.09	d : 0.07	b : 0.05	[ : 0.05	i : 0.05	e : 0.05	g : 0.03	f : 0.03	# : 0.01	
c : 0.35	= : 0.12	a : 0.07	! : 0.05	" : 0.05	i : 0.05	# : 0.05	d : 0.05	e : 0.05	g : 0.03	f : 0.03	b : 0.01	[ : 0.01	
c : 0.22	" : 0.18	! : 0.12	# : 0.07	= : 0.05	[ : 0.05	f : 0.05	b : 0.05	e : 0.05	g : 0.03	i : 0.03	d : 0.03	
" : 0.25	! : 0.22	c : 0.11	b : 0.07	[ : 0.07	# : 0.07	= : 0.05	e : 0.05	i : 0.03	d : 0.01	f : 0.01	
" : 0.22	! : 0.18	d : 0.14	c : 0.11	# : 0.05	a : 0.05	= : 0.03	f : 0.03	i : 0.03	e : 0.03	[ : 0.03	b : 0.01	r : 0.01	
c : 0.37	d : 0.20	! : 0.09	" : 0.09	= : 0.03	[ : 0.03	f : 0.03	b : 0.03	a : 0.01	e : 0.01	r : 0.01	# : 0.01	o : 0.01	
c : 0.37	d : 0.22	b : 0.16	a : 0.03	= : 0.03	f : 0.03	r : 0.03	! : 0.03	e : 0.01	o : 0.01	" : 0.01	
c : 0.37	d : 0.20	o : 0.14	b : 0.12	f : 0.03	r : 0.03	[ : 0.01	e : 0.01	= : 0.01	n : 0.01	
n : 0.42	o : 0.20	c : 0.09	d : 0.07	m : 0.07	r : 0.03	f : 0.01	a : 0.01	b : 0.01	[ : 0.01	l : 0.01	
n : 0.42	o : 0.20	m : 0.14	l : 0.05	c : 0.05	r : 0.03	f : 0.01	b : 0.01	a : 0.01	d : 0.01	
n : 0.42	o : 0.22	l : 0.16	m : 0.14	r : 0.03	
n : 0.42	o : 0.20	l : 0.14	m : 0.14	r : 0.03	a : 0.01	c : 0.01	
n : 0.40	o : 0.20	l : 0.11	m : 0.07	c : 0.05	d : 0.03	r : 0.03	b : 0.03	= : 0.01	] : 0.01	
c : 0.37	d : 0.22	b : 0.16	o : 0.07	a : 0.05	= : 0.03	f : 0.03	r : 0.01	e : 0.01	
c : 0.40	d : 0.22	b : 0.14	] : 0.03	= : 0.03	f : 0.03	4 : 0.03	r : 0.01	e : 0.01	3 : 0.01	o : 0.01	
c : 0.40	d : 0.22	4 : 0.07	] : 0.05	3 : 0.05	a : 0.03	= : 0.03	f : 0.03	b : 0.01	e : 0.01	o : 0.01	2 : 0.01	
d : 0.18	4 : 0.18	2 : 0.16	3 : 0.12	c : 0.11	] : 0.07	= : 0.03	f : 0.03	a : 0.03	b : 0.01	e : 0.01	
2 : 0.25	4 : 0.22	3 : 0.12	c : 0.11	] : 0.11	b : 0.05	= : 0.03	f : 0.03	e : 0.03	
c : 0.24	4 : 0.18	2 : 0.12	3 : 0.09	= : 0.05	e : 0.05	g : 0.03	f : 0.03	i : 0.03	b : 0.03	d : 0.03	] : 0.01	a : 0.01	6 : 0.01	
c : 0.29	4 : 0.14	= : 0.07	d : 0.07	b : 0.05	] : 0.05	2 : 0.05	e : 0.05	g : 0.03	f : 0.03	i : 0.03	3 : 0.03	a : 0.01	6 : 0.01	
c : 0.33	= : 0.11	b : 0.09	d : 0.09	2 : 0.07	4 : 0.05	i : 0.05	e : 0.05	g : 0.03	f : 0.03	a : 0.01	6 : 0.01	3 : 0.01	
c : 0.18	= : 0.12	2 : 0.11	] : 0.11	d : 0.09	i : 0.07	3 : 0.05	e : 0.05	4 : 0.03	g : 0.03	f : 0.03	b : 0.03	a : 0.01	6 : 0.01	
= : 0.14	c : 0.14	] : 0.11	2 : 0.11	d : 0.09	g : 0.07	3 : 0.07	i : 0.07	e : 0.05	4 : 0.03	f : 0.03	b : 0.01	6 : 0.01	
= : 0.14	4 : 0.11	g : 0.09	c : 0.09	i : 0.09	3 : 0.07	d : 0.07	a : 0.05	] : 0.05	2 : 0.05	e : 0.05	f : 0.03	b : 0.01	6 : 0.01	h : 0.01	
= : 0.14	g : 0.14	c : 0.12	i : 0.11	4 : 0.09	] : 0.07	e : 0.07	3 : 0.05	d : 0.05	f : 0.03	a : 0.01	2 : 0.01	h : 0.01	b : 0.01	
= : 0.14	c : 0.14	g : 0.14	i : 0.11	d : 0.07	e : 0.07	4 : 0.07	b : 0.05	a : 0.03	2 : 0.03	] : 0.03	6 : 0.01	3 : 0.01	h : 0.01	
= : 0.14	g : 0.14	c : 0.11	i : 0.11	] : 0.07	2 : 0.07	e : 0.07	b : 0.07	4 : 0.07	d : 0.03	f : 0.01	6 : 0.01	3 : 0.01	h : 0.01	
= : 0.14	g : 0.14	c : 0.12	e : 0.11	d : 0.07	i : 0.07	] : 0.07	2 : 0.05	b : 0.05	f : 0.03	3 : 0.03	6 : 0.01	h : 0.01	a : 0.01	
c : 0.14	g : 0.14	= : 0.12	f : 0.09	d : 0.07	e : 0.07	i : 0.07	3 : 0.07	] : 0.05	6 : 0.03	b : 0.03	2 : 0.01	4 : 0.01	h : 0.01	

#score	803.2751028957297
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_UTR_m1_run1.txt

#BEAR
gg^^^^^^^^^^^^^^^^^^^^^^^^^^gg	chr11:18429113-18429327(+)$1	214	56	86	32.1651
cc!!ffffffwwwwwwwwwwwwwwffffff	chr12:57106745-57106979(-)$1	234	123	153	19.3283
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:163991625-163991833(+)$1	208	33	63	31.6254
ee^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr12:120649630-120649883(-)$1	253	84	114	31.7518
^^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr12:56669728-56670050(-)$1	322	42	72	30.4798
==========uuuuuuuuuuuu========	chr22:21306555-21306810(+)$1	255	145	175	18.6540
==========vvvvvvvvvvvvv=======	chr8:54959779-54960045(-)$1	266	189	219	19.7308
ffffff^^^^^^^^^^^^^^^^^^ffffff	chr5:10680810-10681150(-)$1	340	53	83	27.3647
gg^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr6:64286452-64286766(+)$1	314	282	312	31.9027
cc!!dddd^^^^^^^^^^^^^^^^^^^^^^	chr12:122692451-122692779(-)$1	328	59	89	26.9696
ff"""cccxxxxxxxxxxxxxxxccc22ff	chr19:56128115-56128427(+)$1	312	141	171	22.5010
ff^^^^^^^^^^^^^^^^^^^^^^ffffff	chr5:112349971-112350226(+)$1	255	153	183	31.0815
^^^^^^^^^^^^^^^^^^^^^^^ccc]eee	chr3:141682552-141682809(-)$1	257	110	140	30.6178
ee^^^^^^^^^^^^^^^^^^eeeee4444f	chr17:47905705-47905950(+)$1	245	129	159	26.4263
gggg[ddddvvvvvvvvvvvvvddddgggg	chr7:116146505-116146777(+)$1	272	33	63	18.5364
===^^^^^^^^^^^^^^^^^^^^=======	chr4:41951256-41951501(+)$1	245	75	105	30.5429
gg####bbvvvvvvvvvvvvvbb4444ggg	chr6:30037716-30037969(+)$1	253	64	94	21.1238
ee^^^^^^^^^^^^^^^^^^^^^eeeee]d	chr12:50493824-50494147(+)$1	323	244	274	30.0858
eeee^^^^^^^^^^^^^^^^^^eeeee]cc	chr19:46970901-46971163(-)$1	262	116	146	27.2929
gggg^^^^^^^^^^^^^^^^^^^ggggggg	chr10:75881685-75881922(-)$1	237	41	71	29.3196
[ffffffyyyyyyyyyyyyyyyyffffff]	chr1:212534462-212534738(+)$1	276	131	161	21.5435
ff^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr1:113455475-113455691(-)$1	216	87	117	31.8955
ee^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr4:42088320-42088569(+)$1	249	136	166	31.7518
ddd[bb^^^^^^^^^^^^^^^^^^bb]ddd	chr10:96997254-96997526(-)$1	272	221	251	26.6513
cc!!eeeeewwwwwwwwwwwwwweeeee44	chr1:155141815-155142137(-)$1	322	116	146	20.2814
eeee:ccc^^^^^^^^^^^^^^^^^^^ccc	chr17:74140767-74141052(-)$1	285	81	111	26.1476
ggggddddyyyyyyyyyyyyyyyyddddbb	chr1:184042366-184042621(+)$1	255	167	197	20.7593
fggggggg^^^^^^^^^^^^^^^^^^gggg	chr8:109247215-109247431(-)$1	216	19	49	26.6962
f####cccwwwwwwwwwwwwwwccc4444f	chr2:175978656-175978911(-)$1	255	207	237	22.3304
^^^^^^^^^^^^^^^^^^^^^^^ccc]bb]	chr11:59838381-59838626(+)$1	245	180	210	30.2117
ff^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr1:113455453-113455675(-)$1	222	71	101	31.8955
gg^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr1:115315657-115315916(-)$1	259	122	152	31.9027
c^^^^^^^^^^^^^^^^^^^^^^ccceeee	chr1:32372429-32372654(-)$1	225	35	65	30.5566
gggggggcccuuuuuuuuuuuuccc]gggg	chr1:153618547-153618867(+)$1	320	252	282	18.2635
ffff^^^^^^^^^^^^^^^^^^^^ffffff	chr11:118472333-118472579(+)$1	246	18	48	29.4075
gggg^^^^^^^^^^^^^^^^^^^ggggggg	chr18:13008384-13008684(+)$1	300	263	293	29.3196
[ccc[ddddwwwwwwwwwwwwwwdddd]cc	chrX:64961212-64961466(+)$1	254	138	168	19.6158
ff^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr1:235273821-235274121(-)$1	300	82	112	31.8955
e"""ddddyyyyyyyyyyyyyyyydddd33	chr2:175979411-175979652(-)$1	241	19	49	22.0868
c^^^^^^^^^^^^^^^^^^^^^^cccdddd	chr11:18429203-18429421(+)$1	218	153	183	30.1689
e^^^^^^^^^^^^^^^^^^^^eeeee333=	chrX:20169333-20169610(-)$1	277	211	241	27.8923
ff^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr9:114696773-114697051(+)$1	278	216	246	31.7486
ii^^^^^^^^^^^^^^^^^^^^^iiiiiii	chr5:162871675-162871902(+)$1	227	95	125	30.5791
ff^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr2:136540732-136540981(+)$1	249	148	178	32.0213
^^^^^^^^^^^^^^^^^^^^^^^ccc]ddd	chr6:64395335-64395668(+)$1	333	260	290	30.3461
b####dddd^^^^^^^^^^^^^^^^^^^^^	chr8:71485655-71485919(-)$1	264	208	238	26.0832
ggg^^^^^^^^^^^^^^^^^^^^ggggggg	chr2:65497486-65497716(+)$1	230	144	174	30.0983
[ccc^^^^^^^^^^^^^^^^^^^ccc]hhh	chr1:54284568-54284853(-)$1	285	187	217	28.9159
:gggggggxxxxxxxxxxxxxxxggggggg	chr7:12272118-12272360(+)$1	242	198	228	19.7559
dd"""cccxxxxxxxxxxxxxxxccc]ddd	chr12:53862500-53862713(+)$1	213	152	182	22.1364
gg^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr15:66783605-66783882(+)$1	277	213	243	31.9027
==^^^^^^^^^^^^^^^^^^^^^^======	chr17:8377758-8378029(-)$1	271	72	102	31.7363
cc^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:102120746-102120965(+)$1	219	165	195	31.7269
[ccc^^^^^^^^^^^^^^^^^^^ccc]ddd	chr4:177251452-177251689(+)$1	237	189	219	29.2311
$$$$$ccc^^^^^^^^^^^^^^^^^^^^^c	chr4:48424980-48425232(+)$1	252	84	114	27.5589
cc"""eeeeexxxxxxxxxxxxxxxeeeee	chr2:188418826-188419117(-)$1	291	219	249	20.3975
ff^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr8:59494698-59494930(+)$1	232	26	56	31.8955

#otherMatches

#Seq PSSM
UGAACAUGCCUAGUCCAACAUUUUUUCCCA	chr11:18429113-18429327(+)$1	214	56	86	32.1651
AAGAGGAAGAGGUAUACUAGGAAAUCUUUC	chr12:57106745-57106979(-)$1	234	123	153	19.3283
ACUAAucucuucucuaucuuuucuuuucuu	chr6:163991625-163991833(+)$1	208	33	63	31.6254
UGGAGCCAUCUCUUCCUCAUAUUUCAGCAG	chr12:120649630-120649883(-)$1	253	84	114	31.7518
UUUUCUCCAUCUUGCUCCUCUUCUGUCAGU	chr12:56669728-56670050(-)$1	322	42	72	30.4798
CAGAGCUCAAAACAAGGCGAGCUUGAGUUC	chr22:21306555-21306810(+)$1	255	145	175	18.6540
UAUAAGGUAUUUAAAAUCUAUUUAUGCUUU	chr8:54959779-54960045(-)$1	266	189	219	19.7308
CAGCAGUUUCGCCCAAAUCCUACUCUGCUG	chr5:10680810-10681150(-)$1	340	53	83	27.3647
AUUUUUUUAAUUAUUUCAUAACCCUAUUGA	chr6:64286452-64286766(+)$1	314	282	312	31.9027
CACCCUGUUUAACAUUUCACCCCACUCUGU	chr12:122692451-122692779(-)$1	328	59	89	26.9696
CCCCAUCCUUCAGAACUUCACACGGACUGG	chr19:56128115-56128427(+)$1	312	141	171	22.5010
AGAGACUGACAUGCUUUUAUUGACCUGCUA	chr5:112349971-112350226(+)$1	255	153	183	31.0815
AUACAAGCAGAAAAACAGUCAUAGAUUGCA	chr3:141682552-141682809(-)$1	257	110	140	30.6178
GUAGAAAAUGAUUGAAAGUGACUUCCGUAU	chr17:47905705-47905950(+)$1	245	129	159	26.4263
AAAUGAGAUUUCUUAUUUGUUUGUCUGUUU	chr7:116146505-116146777(+)$1	272	33	63	18.5364
UUGCUCCAACCUUUUAUAUACUAUAGAUUU	chr4:41951256-41951501(+)$1	245	75	105	30.5429
UCCUCUGCCUUUUGUUUUUCAGCUUCAGAG	chr6:30037716-30037969(+)$1	253	64	94	21.1238
CUCUAAACCCACAGAACUGACAAAGCCCCU	chr12:50493824-50494147(+)$1	323	244	274	30.0858
UGCACCAAACUGUCACCAUCUUUGCAGCAG	chr19:46970901-46971163(-)$1	262	116	146	27.2929
AAAUAUUUAUUCCUUUUGCCUAAGUUUGGC	chr10:75881685-75881922(-)$1	237	41	71	29.3196
UGGGGGGAAUUACCUGCCCUAACCCCUCCC	chr1:212534462-212534738(+)$1	276	131	161	21.5435
GAAUUCACUUAAGUUUUUCCAAAACCUCAG	chr1:113455475-113455691(-)$1	216	87	117	31.8955
GCAAUCAUCUUUCCUUUUUUCACAUUGGUA	chr4:42088320-42088569(+)$1	249	136	166	31.7518
UUAUGUGUCCCAUUUCCUACUCAAGCCUGA	chr10:96997254-96997526(-)$1	272	221	251	26.6513
GGUUGGUCUGUACUACAUCAACAAGAUCUC	chr1:155141815-155142137(-)$1	322	116	146	20.2814
UGGCAGCUUUGUUACAAACAUCCCUCUGGC	chr17:74140767-74141052(-)$1	285	81	111	26.1476
CAAAACUCAAAAUAUGUUCAUCCAGAGUGU	chr1:184042366-184042621(+)$1	255	167	197	20.7593
UGACCUCAAAGACUUAUGAAUUACAAUGGG	chr8:109247215-109247431(-)$1	216	19	49	26.6962
UUUAAAUCUCUAUCGCAAAACUGAUCUUUG	chr2:175978656-175978911(-)$1	255	207	237	22.3304
aaaauaaaaagaaaaugugaaacagcaccA	chr11:59838381-59838626(+)$1	245	180	210	30.2117
GAAUUCACUUAAGUUUUUCCAAAACCUCAG	chr1:113455453-113455675(-)$1	222	71	101	31.8955
GGUUCACUCAUCAACUCAUUCCCGUCCCAG	chr1:115315657-115315916(-)$1	259	122	152	31.9027
AAACAAAAUAAUGCUUUUCGAAAUUGUUUC	chr1:32372429-32372654(-)$1	225	35	65	30.5566
UUGAGGUGCCUCAAAAUGCCAUGGCUACUU	chr1:153618547-153618867(+)$1	320	252	282	18.2635
UACGCAUGUCUUCUGUUCUUUUCCCGUAUC	chr11:118472333-118472579(+)$1	246	18	48	29.4075
AUUAUUUCUUAAUGCAUAUGUUUUAAUUUC	chr18:13008384-13008684(+)$1	300	263	293	29.3196
CACUAUAGGUCAUACAAUCCAUUCUUAAAG	chrX:64961212-64961466(+)$1	254	138	168	19.6158
GACUUACAAACUCUUCUUAAUCAUUAUCAA	chr1:235273821-235274121(-)$1	300	82	112	31.8955
UUUAAAUGCCACCCUUUUUUAUCUCAUUGU	chr2:175979411-175979652(-)$1	241	19	49	22.0868
UAUACCAACUAAAACCCCCAAUAAACCUUG	chr11:18429203-18429421(+)$1	218	153	183	30.1689
UAUUCAACAGAGCCACACUUAACCACUUUU	chrX:20169333-20169610(-)$1	277	211	241	27.8923
UCCuuuuuucuuucuuuuuuuuuuuuuuuA	chr9:114696773-114697051(+)$1	278	216	246	31.7486
UGGCUAUAUCCAAUUUGACAUCACGUUAUG	chr5:162871675-162871902(+)$1	227	95	125	30.5791
AGAAUUUAUGUUUAACUUCUCUUUUUACUC	chr2:136540732-136540981(+)$1	249	148	178	32.0213
AGGAUAAACUGAAACUGAAAAAACCUGAGA	chr6:64395335-64395668(+)$1	333	260	290	30.3461
GAAAUCAAUCAAAAUAAAAAUUUUUACUUU	chr8:71485655-71485919(-)$1	264	208	238	26.0832
UUAUAUAAAUACCCCCAGCCUUUUGAGAAC	chr2:65497486-65497716(+)$1	230	144	174	30.0983
CUGCAUUUUAUAUUAUUUUCUUGGUAAGAA	chr1:54284568-54284853(-)$1	285	187	217	28.9159
AAUGUACAAUACUGUAAAUAAACUGUGCAU	chr7:12272118-12272360(+)$1	242	198	228	19.7559
AAAUAGACUGUAAAGAAAUAGAUGUCGUUU	chr12:53862500-53862713(+)$1	213	152	182	22.1364
UAACAAAUCUAAUCUCUUAUUCUAAUAAAU	chr15:66783605-66783882(+)$1	277	213	243	31.9027
AUCAUUCGCCUCUAUAACAAUUUAAUGUAU	chr17:8377758-8378029(-)$1	271	72	102	31.7363
GCCCAUUGUCCUCCUUUUCACUUUAUUGCU	chr10:102120746-102120965(+)$1	219	165	195	31.7269
UGGUGAGGAAGAUAAGUAAAAAUGCCCAAC	chr4:177251452-177251689(+)$1	237	189	219	29.2311
GAGAGGGGGAAAAAAAUCUAUGCACUUAAC	chr4:48424980-48425232(+)$1	252	84	114	27.5589
CCAUAAGAAAUAACUUUAAUUUCUUUUUCU	chr2:188418826-188419117(-)$1	291	219	249	20.3975
AUGAUUGCCUUUGAUUUUUUUUUUAAAUUC	chr8:59494698-59494930(+)$1	232	26	56	31.8955

#DB
((..........................))	chr11:18429113-18429327(+)$1	1	56	86	32.1651
((..((((((..............))))))	chr12:57106745-57106979(-)$1	1	123	153	19.3283
((............................	chr6:163991625-163991833(+)$1	1	33	63	31.6254
((.........................)))	chr12:120649630-120649883(-)$1	1	84	114	31.7518
.......................)))))))	chr12:56669728-56670050(-)$1	1	42	72	30.4798
((((((((((............))))))))	chr22:21306555-21306810(+)$1	1	145	175	18.6540
((((((((((.............)))))))	chr8:54959779-54960045(-)$1	1	189	219	19.7308
((((((..................))))))	chr5:10680810-10681150(-)$1	1	53	83	27.3647
((.......................)))))	chr6:64286452-64286766(+)$1	1	282	312	31.9027
((..((((......................	chr12:122692451-122692779(-)$1	1	59	89	26.9696
((...(((...............)))..))	chr19:56128115-56128427(+)$1	1	141	171	22.5010
((......................))))))	chr5:112349971-112350226(+)$1	1	153	183	31.0815
.......................))).)))	chr3:141682552-141682809(-)$1	1	110	140	30.6178
((..................)))))....)	chr17:47905705-47905950(+)$1	1	129	159	26.4263
((((.((((.............))))))))	chr7:116146505-116146777(+)$1	1	33	63	18.5364
(((....................)))))))	chr4:41951256-41951501(+)$1	1	75	105	30.5429
((....((.............))....)))	chr6:30037716-30037969(+)$1	1	64	94	21.1238
((.....................))))).)	chr12:50493824-50494147(+)$1	1	244	274	30.0858
((((..................))))).))	chr19:46970901-46971163(-)$1	1	116	146	27.2929
((((...................)))))))	chr10:75881685-75881922(-)$1	1	41	71	29.3196
.((((((................)))))).	chr1:212534462-212534738(+)$1	1	131	161	21.5435
((........................))))	chr1:113455475-113455691(-)$1	1	87	117	31.8955
((.........................)))	chr4:42088320-42088569(+)$1	1	136	166	31.7518
(((.((..................)).)))	chr10:96997254-96997526(-)$1	1	221	251	26.6513
((..(((((..............)))))..	chr1:155141815-155142137(-)$1	1	116	146	20.2814
)))).(((...................)))	chr17:74140767-74141052(-)$1	1	81	111	26.1476
))))((((................))))((	chr1:184042366-184042621(+)$1	1	167	197	20.7593
((((((((..................))))	chr8:109247215-109247431(-)$1	1	19	49	26.6962
(....(((..............)))....)	chr2:175978656-175978911(-)$1	1	207	237	22.3304
.......................))).)).	chr11:59838381-59838626(+)$1	1	180	210	30.2117
((........................))))	chr1:113455453-113455675(-)$1	1	71	101	31.8955
((.......................)))))	chr1:115315657-115315916(-)$1	1	122	152	31.9027
(......................)))))))	chr1:32372429-32372654(-)$1	1	35	65	30.5566
((((((((((............))).))))	chr1:153618547-153618867(+)$1	1	252	282	18.2635
((((....................))))))	chr11:118472333-118472579(+)$1	1	18	48	29.4075
((((...................)))))))	chr18:13008384-13008684(+)$1	1	263	293	29.3196
.(((.((((..............)))).))	chrX:64961212-64961466(+)$1	1	138	168	19.6158
((........................))))	chr1:235273821-235274121(-)$1	1	82	112	31.8955
(...((((................))))..	chr2:175979411-175979652(-)$1	1	19	49	22.0868
(......................)))))))	chr11:18429203-18429421(+)$1	1	153	183	30.1689
(....................)))))...)	chrX:20169333-20169610(-)$1	1	211	241	27.8923
((............................	chr9:114696773-114697051(+)$1	1	216	246	31.7486
((.....................)))))))	chr5:162871675-162871902(+)$1	1	95	125	30.5791
((.........................)))	chr2:136540732-136540981(+)$1	1	148	178	32.0213
.......................))).)))	chr6:64395335-64395668(+)$1	1	260	290	30.3461
(....((((.....................	chr8:71485655-71485919(-)$1	1	208	238	26.0832
(((....................)))))))	chr2:65497486-65497716(+)$1	1	144	174	30.0983
.(((...................))).)))	chr1:54284568-54284853(-)$1	1	187	217	28.9159
.(((((((...............)))))))	chr7:12272118-12272360(+)$1	1	198	228	19.7559
((...(((...............))).)))	chr12:53862500-53862713(+)$1	1	152	182	22.1364
((.......................)))))	chr15:66783605-66783882(+)$1	1	213	243	31.9027
((......................))))))	chr17:8377758-8378029(-)$1	1	72	102	31.7363
((............................	chr10:102120746-102120965(+)$1	1	165	195	31.7269
.(((...................))).)))	chr4:177251452-177251689(+)$1	1	189	219	29.2311
.....(((.....................)	chr4:48424980-48425232(+)$1	1	84	114	27.5589
((...(((((...............)))))	chr2:188418826-188419117(-)$1	1	219	249	20.3975
((........................))))	chr8:59494698-59494930(+)$1	1	26	56	31.8955

#PSSM
f : 0.21	g : 0.19	e : 0.15	c : 0.12	^ : 0.07	= : 0.07	[ : 0.07	d : 0.03	i : 0.01	b : 0.01	: : 0.01	$ : 0.01	
g : 0.22	f : 0.19	c : 0.14	e : 0.12	^ : 0.12	= : 0.07	d : 0.03	# : 0.03	" : 0.01	i : 0.01	$ : 0.01	
^ : 0.45	g : 0.14	" : 0.07	! : 0.05	= : 0.05	f : 0.05	# : 0.05	c : 0.05	e : 0.03	d : 0.01	$ : 0.01	
^ : 0.49	g : 0.12	" : 0.07	! : 0.05	f : 0.05	# : 0.05	c : 0.05	= : 0.03	e : 0.03	[ : 0.01	$ : 0.01	
^ : 0.59	f : 0.05	d : 0.05	" : 0.05	# : 0.05	g : 0.05	= : 0.03	[ : 0.03	b : 0.01	e : 0.01	: : 0.01	$ : 0.01	
^ : 0.59	d : 0.10	c : 0.08	f : 0.05	g : 0.05	= : 0.03	e : 0.03	# : 0.01	b : 0.01	
^ : 0.63	d : 0.10	c : 0.08	g : 0.05	f : 0.03	= : 0.03	e : 0.03	b : 0.01	
^ : 0.63	d : 0.10	c : 0.10	= : 0.03	e : 0.03	g : 0.03	f : 0.01	b : 0.01	y : 0.01	
^ : 0.70	x : 0.05	d : 0.05	y : 0.05	= : 0.03	e : 0.03	f : 0.01	v : 0.01	w : 0.01	c : 0.01	
^ : 0.71	x : 0.05	y : 0.05	w : 0.05	= : 0.03	v : 0.03	f : 0.01	c : 0.01	e : 0.01	
^ : 0.71	w : 0.07	x : 0.07	v : 0.05	y : 0.05	u : 0.03	
^ : 0.71	w : 0.07	x : 0.07	v : 0.05	y : 0.05	u : 0.03	
^ : 0.71	w : 0.07	x : 0.07	v : 0.05	y : 0.05	u : 0.03	
^ : 0.71	w : 0.07	x : 0.07	v : 0.05	y : 0.05	u : 0.03	
^ : 0.71	w : 0.07	x : 0.07	v : 0.05	y : 0.05	u : 0.03	
^ : 0.71	w : 0.07	x : 0.07	v : 0.05	y : 0.05	u : 0.03	
^ : 0.71	w : 0.07	x : 0.07	v : 0.05	y : 0.05	u : 0.03	
^ : 0.71	w : 0.07	x : 0.07	v : 0.05	y : 0.05	u : 0.03	
^ : 0.71	w : 0.07	x : 0.07	v : 0.05	y : 0.05	u : 0.03	
^ : 0.71	w : 0.07	x : 0.07	v : 0.05	y : 0.05	u : 0.03	
^ : 0.70	w : 0.07	x : 0.07	v : 0.05	y : 0.05	u : 0.03	e : 0.01	
^ : 0.68	w : 0.07	x : 0.07	y : 0.05	u : 0.03	v : 0.03	e : 0.03	b : 0.01	
^ : 0.66	x : 0.07	w : 0.05	e : 0.05	y : 0.05	c : 0.03	= : 0.01	v : 0.01	d : 0.01	b : 0.01	
^ : 0.42	c : 0.19	g : 0.08	e : 0.08	= : 0.05	d : 0.03	y : 0.03	w : 0.01	4 : 0.01	f : 0.01	i : 0.01	x : 0.01	
^ : 0.33	c : 0.19	f : 0.08	g : 0.08	e : 0.08	= : 0.07	d : 0.07	4 : 0.01	b : 0.01	i : 0.01	x : 0.01	
^ : 0.28	c : 0.15	g : 0.14	f : 0.08	e : 0.08	= : 0.07	d : 0.07	4 : 0.05	b : 0.01	] : 0.01	i : 0.01	
^ : 0.19	g : 0.19	f : 0.15	] : 0.12	e : 0.08	= : 0.07	d : 0.07	4 : 0.05	2 : 0.01	3 : 0.01	i : 0.01	
g : 0.21	f : 0.17	^ : 0.12	e : 0.12	d : 0.12	= : 0.07	4 : 0.03	] : 0.03	2 : 0.01	c : 0.01	b : 0.01	3 : 0.01	i : 0.01	h : 0.01	
g : 0.22	f : 0.19	^ : 0.10	e : 0.08	d : 0.08	= : 0.07	4 : 0.05	c : 0.05	b : 0.03	3 : 0.03	] : 0.01	i : 0.01	h : 0.01	
g : 0.22	f : 0.21	d : 0.10	^ : 0.08	e : 0.08	= : 0.08	c : 0.07	] : 0.03	4 : 0.01	b : 0.01	3 : 0.01	i : 0.01	h : 0.01	

#score	1554.9101583164118
#seq	57
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_UTR_m1_run2.txt

#BEAR
ccc[ccc[bb!!ccclllccc22bb]ccc]c	chr11:122929979-122930223(-)$1	244	125	156	20.6745
ccc]dddd:cccccclllccc22ccc:iiii	chr3:10362532-10362784(-)$1	252	55	86	17.1331
:dddd[dddd!!ccclllccc22dddd]ddd	chr11:122929568-122929782(-)$1	214	181	212	22.0744
ddddd[dddd!!ccclllccc22dddd]ddd	chr11:122929515-122929718(-)$1	203	117	148	22.8057
ddddd[dddd!!ccclllccc22dddd]ddd	chr11:122929530-122929741(-)$1	211	140	171	22.8057
ccc[ccc[bb!!ccclllccc22bb]ccc]c	chr11:122929940-122930179(-)$1	239	81	112	20.6745
[dddd[ccc"""bbmmmmbb333cccdddd]	chr1:145442444-145442652(+)$1	208	7	38	15.8061

#otherMatches

#Seq PSSM
guuuccaccaaaagcuuggcuaaugauggca	chr11:122929979-122930223(-)$1	244	125	156	20.6745
GUGUUGGUACUGAGGAGGCCUAGCAGGGUGA	chr3:10362532-10362784(-)$1	252	55	86	17.1331
AGGACCCUAGCACUGUCACAGACCUGGAGUC	chr11:122929568-122929782(-)$1	214	181	212	22.0744
AGGACCCUAGCACUGUCACAGACCUGGAGUC	chr11:122929515-122929718(-)$1	203	117	148	22.8057
AGGACCCUAGCACUGUCACAGACCUGGAGUC	chr11:122929530-122929741(-)$1	211	140	171	22.8057
guuuccaccaaaagcuuggcuaaugauggca	chr11:122929940-122930179(-)$1	239	81	112	20.6745
CCUUUUCUGAGAGUUAUUACAGCCAGAAAGU	chr1:145442444-145442652(+)$1	208	7	38	15.8061

#DB
(((.(((.((..(((...)))..)).))).)	chr11:122929979-122930223(-)$1	1	125	156	20.6745
))).)))).((((((...)))..))).((((	chr3:10362532-10362784(-)$1	1	55	86	17.1331
.((((.((((..(((...)))..)))).)))	chr11:122929568-122929782(-)$1	1	181	212	22.0744
)((((.((((..(((...)))..)))).)))	chr11:122929515-122929718(-)$1	1	117	148	22.8057
)((((.((((..(((...)))..)))).)))	chr11:122929530-122929741(-)$1	1	140	171	22.8057
(((.(((.((..(((...)))..)).))).)	chr11:122929940-122930179(-)$1	1	81	112	20.6745
.((((.(((...((....))...))))))).	chr1:145442444-145442652(+)$1	1	7	38	15.8061

#PSSM
c : 0.42	d : 0.28	: : 0.14	[ : 0.14	
d : 0.57	c : 0.42	
d : 0.57	c : 0.42	
d : 0.57	[ : 0.28	] : 0.14	
d : 0.71	c : 0.28	
[ : 0.57	c : 0.28	d : 0.14	
d : 0.57	c : 0.42	
d : 0.57	[ : 0.28	c : 0.14	
d : 0.42	b : 0.28	: : 0.14	c : 0.14	
d : 0.42	b : 0.28	c : 0.14	" : 0.14	
! : 0.71	c : 0.14	" : 0.14	
! : 0.71	c : 0.14	" : 0.14	
c : 0.85	b : 0.14	
c : 0.85	b : 0.14	
c : 0.85	m : 0.14	
l : 0.85	m : 0.14	
l : 0.85	m : 0.14	
l : 0.85	m : 0.14	
c : 0.85	b : 0.14	
c : 0.85	b : 0.14	
c : 0.85	3 : 0.14	
2 : 0.85	3 : 0.14	
2 : 0.85	3 : 0.14	
d : 0.42	b : 0.28	c : 0.28	
d : 0.42	b : 0.28	c : 0.28	
d : 0.42	] : 0.28	c : 0.28	
d : 0.57	c : 0.28	: : 0.14	
] : 0.42	c : 0.28	i : 0.14	d : 0.14	
d : 0.57	c : 0.28	i : 0.14	
d : 0.57	] : 0.28	i : 0.14	
d : 0.42	c : 0.28	i : 0.14	] : 0.14	

#score	141.97448034871425
#seq	7
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_CDS_m3_run2.txt

#BEAR
ii!!eeeee[cccmmmmccc]eeeeeiiii	chr2:152670613-152670914(-)$1	301	9	39	13.9981
==========!!bblllbb]==========	chr11:32608455-32608738(+)$1	283	122	152	11.9239
"eeeeegggggggmmmmggggggg333eee	chr1:27745392-27745670(-)$1	278	114	144	11.7706
cc[dddd[a[cccmmmmccc]adddd]ccc	chr9:138774570-138774828(-)$1	258	104	134	13.9014
eeee!!gggggggmmmmggggggg4444ee	chr6:33243721-33243939(+)$1	218	21	51	12.1607
dda[dddd[cccnnnnnccc]dddd]a444	chr8:97245282-97245488(-)$1	206	35	65	10.8652
g!!ffffff[cccmmmmccc]ffffff]gg	chr1:220157451-220157696(-)$1	245	202	232	13.0777
=========[cccmmmmccc]=========	chr1:51000966-51001203(-)$1	237	186	216	16.6911
fffff!!bb[cccmmmmccc]bb333ffff	chr11:67376880-67377156(+)$1	276	119	149	12.8419
hhh[a"""cccbbmmmmbb]ccc4444ahh	chr8:145161226-145161446(+)$1	220	55	85	11.5146
e!!==========mmmm==========333	chr15:64668841-64669095(-)$1	254	156	186	14.7289
ddd[eeeee[cccmmmmccc]eeeee]ddd	chr15:85213861-85214112(-)$1	251	69	99	12.5170
ee"""ccc!!cccmmmmccc]ccc]eeeee	chr10:11567284-11567492(-)$1	208	48	78	14.6712
i####ccc"""bbmmmmbb22ccc]iiiii	chr20:62663190-62663437(+)$1	247	206	236	13.2372
ggg[dddd!!cccmmmmccc22dddd22gg	chr20:34240721-34241004(-)$1	283	237	267	13.7386
d[ddddccc[cccmmmmcccccc22ddddd	chr12:112237621-112237909(+)$1	288	92	122	12.5453
ffffff####cccmmmmcccffffff22bb	chr4:79860201-79860480(-)$1	279	243	273	11.4835
b[iiiiiiiii[ammmmaiiiiiiiiibb]	chr12:7079548-7079793(-)$1	245	105	135	12.8072
gggg[eeeeecccmmmmccc]eeeeegggg	chr2:63833906-63834172(+)$1	266	102	132	13.0113
=============mmmm=============	chr8:117738288-117738512(-)$1	224	20	50	14.8459
=============mmmm=============	chr3:25685137-25685360(-)$1	223	167	197	14.8459
!!bb!!gggggggmmmmggggggg22bb22	chr1:112305200-112305487(+)$1	287	225	255	11.0550
"""dddd"""cccmmmmccc333dddd333	chr20:33645246-33645475(-)$1	229	149	179	14.6267
ee[ccc[ccc[bbmmmmbb]cccccc]eee	chr2:223791659-223792008(+)$1	349	179	209	11.2006
dddd[ccc!!cccmmmmcccccc]dddd44	chr19:48259711-48259961(+)$1	250	19	49	13.3672
b[ccc[ccc[cccmmmmccc]ccc]ccc]b	chr16:3727514-3727760(-)$1	246	45	75	14.6779
ddddccc"""ccclllccc4444ccc]ddd	chr21:35275793-35276045(-)$1	252	195	225	11.6655
iiiii!!bb[cccmmmmccc]bb]iiiiii	chr17:7477492-7477714(+)$1	222	21	51	14.6009
:ggggggg!!cccmmmmccc4444gggggg	chr11:62327119-62327332(-)$1	213	163	193	13.8615
:ccc!!ddddcccmmmmccc333dddd]cc	chrX:118604774-118604980(+)$1	206	22	52	12.2280
iiiiiiccc[cccmmmmccc]ccc666666	chr1:52301704-52301971(-)$1	267	30	60	12.9081
))===========lll===========bb2	chr1:44441878-44442097(+)$1	219	110	140	11.1489
b"""iiiiiiiiimmmmiiiiiiiii4444	chrX:24094784-24095054(+)$1	270	220	250	13.4659
=====dddd[cccmmmmcccdddd333===	chr1:109485994-109486247(-)$1	253	215	245	14.7950
========[cccnnnnnccc]=========	chr1:198703361-198703641(+)$1	280	34	64	13.6996
ggggg[ccc[cccmmmmcccccc4444ggg	chr12:50152972-50153205(+)$1	233	182	212	14.9733
fff!!ccc!!cccmmmmccc22ccc333ff	chr11:95545998-95546254(+)$1	256	63	93	14.8283
$dddd[ccc!!ccclllccc333ccc]ddd	chr2:10937140-10937381(-)$1	241	30	60	11.6111
b!!dddd"""cccmmmmcccddddbbgggg	chr19:39191208-39191457(+)$1	249	106	136	12.8699
====[ddddcccnnnnnccc]dddd]====	chr12:120903402-120903668(-)$1	266	73	103	11.9067
((ggggggg[ccclllccc4444ggggggg	chr17:27612908-27613150(-)$1	242	34	64	11.1987
cccdddd[cccooooooccc]dddd]ccc3	chr3:136035701-136035953(+)$1	252	131	161	10.7059
hhhhhhccccccnnnnnccc]ccc333hhh	chr1:211966311-211966554(-)$1	243	84	114	10.9623
iiibbccc[cccnnnnnccc]ccc]bb333	chr7:103138463-103138683(-)$1	220	111	141	11.6813
fbb"""ccc[cccmmmmccc]ccc333bb]	chr1:62914035-62914259(+)$1	224	70	100	14.7167
cccc[bb"""cccmmmmccc22bb]ccc]c	chr2:127453526-127453780(+)$1	254	45	75	13.4269
ii"""ccc[cccnnnnnccc]ccc]iiiii	chr2:216262304-216262624(-)$1	320	47	77	13.0800
eeeccc[a"""bbmmmmbb4444a]ccc]e	chr2:130948018-130948250(+)$1	232	66	96	12.1416
iiiiiiii!!cccmmmmccc22iiiiiiii	chr5:167928985-167929211(+)$1	226	2	32	15.5998

#otherMatches

#Seq PSSM
UGUCCUUGAUUAAAAAAUUGUUCAAGCAAG	chr2:152670613-152670914(-)$1	301	9	39	13.9981
UCUGAAAUCUAAAGGAGCUGAGAUUUCAGA	chr11:32608455-32608738(+)$1	283	122	152	11.9239
UUACUCAGGCAAAUACCUUUGCCUCUCGGG	chr1:27745392-27745670(-)$1	278	114	144	11.7706
GUGAUGGAGAGUGAUGACACCCCCGUGACA	chr9:138774570-138774828(-)$1	258	104	134	13.9014
UGGAACGUGUGAUCACCAUUAUGCAGAAUC	chr6:33243721-33243939(+)$1	218	21	51	12.1607
UCAGCAUCAGGCAAGUGGCUGGAUGGUAUU	chr8:97245282-97245488(-)$1	206	35	65	10.8652
UUAUGUUCAGAUUCUAAAAUAUGGGCACAA	chr1:220157451-220157696(-)$1	245	202	232	13.0777
aggauuuugaugagauuuuaauaggauuuu	chr1:51000966-51001203(-)$1	237	186	216	16.6911
CUCACAAGCUGCUGGAAGGCUGCCUGGUGG	chr11:67376880-67377156(+)$1	276	119	149	12.8419
GUGCGGGAGGACUUCAAGGAUCUGAAACCA	chr8:145161226-145161446(+)$1	220	55	85	11.5146
AAGUUUUUAUAUUCUGGAAUAUAAAGAAAA	chr15:64668841-64669095(-)$1	254	156	186	14.7289
CUGUGAUAAUCAGUUUUUUGUUUGUUUUAG	chr15:85213861-85214112(-)$1	251	69	99	12.5170
ACCUUGGGAAGAUGCUGAUUACCUUGUUUA	chr10:11567284-11567492(-)$1	208	48	78	14.6712
GGUGAGGCCCCUCGACAGACCGCCGCUCAG	chr20:62663190-62663437(+)$1	247	206	236	13.2372
Gccuggccccggccccggccccggcccugg	chr20:34240721-34241004(-)$1	283	237	267	13.7386
UCGGGCCAGUGAUGCAGAUCCUGAAGUUCA	chr12:112237621-112237909(+)$1	288	92	122	12.5453
GACGGCUACCGGGCCUACCUGCCGUCCAGG	chr4:79860201-79860480(-)$1	279	243	273	11.4835
GACUUGGCGGGACGGCUGCCCGCCGGGCCC	chr12:7079548-7079793(-)$1	245	105	135	12.8072
AGUUUGUUGAAGGUCUCCCUAUUAAUGAUU	chr2:63833906-63834172(+)$1	266	102	132	13.0113
UUCUUUUGUUUUUUCUUAGAAAUAAAGGAA	chr8:117738288-117738512(-)$1	224	20	50	14.8459
AAAUUUUGGGUGAGUACUUGCUUAGGAUUU	chr3:25685137-25685360(-)$1	223	167	197	14.8459
UGAGUGCUUUCUUUAAGGGGAGGGAUCUAU	chr1:112305200-112305487(+)$1	287	225	255	11.0550
AAACUGAAAAGUAAGUAUACCUAUUAGCUA	chr20:33645246-33645475(-)$1	229	149	179	14.6267
GUUUCUGCUGUCCUGUUGGUCAGGGAUACG	chr2:223791659-223792008(+)$1	349	179	209	11.2006
CAGGCCCUUGGGCUUCUGCCAGGCCCUGCU	chr19:48259711-48259961(+)$1	250	19	49	13.3672
GGAGUGUCUGCUCUCUGGAGGGGAGGCUGC	chr16:3727514-3727760(-)$1	246	45	75	14.6779
GCUAUGCGGGAGAUUGUCUAAAAGUGUUGG	chr21:35275793-35276045(-)$1	252	195	225	11.6655
GGCUGUCAGGAUUUCUGAGUGCUUCGGUCG	chr17:7477492-7477714(+)$1	222	21	51	14.6009
GGGCAAGAUCUUCAAGUGAACAUCUCUUGC	chr11:62327119-62327332(-)$1	213	163	193	13.8615
AGCCUAGUGAAUCUUAGGAUUUUUCAUCGG	chrX:118604774-118604980(+)$1	206	22	52	12.2280
CGAAUAUUAUUCCUUUAGGGUUGACUCAAC	chr1:52301704-52301971(-)$1	267	30	60	12.9081
CGGCUCCUCCAUCAUUGGUGGAGGAGUGAA	chr1:44441878-44442097(+)$1	219	110	140	11.1489
CAGUUCGUUACCUUAGUAGGUAACGGUAAG	chrX:24094784-24095054(+)$1	270	220	250	13.4659
UCCAUUGAGAGCAAUCUUGCCUUGGAUGUG	chr1:109485994-109486247(-)$1	253	215	245	14.7950
AAAUUUUUAUAGCACUUUUAAGAAAAUUUU	chr1:198703361-198703641(+)$1	280	34	64	13.6996
UCAGCAGCUGAACUUAGGUUGGCAUUGGCU	chr12:50152972-50153205(+)$1	233	182	212	14.9733
UUACAGCAUCCACGUUUGUGUUUGUAUUUG	chr11:95545998-95546254(+)$1	256	63	93	14.8283
UCUUUUACAUUUCCACAGGAUGUUGUCAAA	chr2:10937140-10937381(-)$1	241	30	60	11.6111
GACGGGCUCAAGCUCAUGCUGCUCCUGGAG	chr19:39191208-39191457(+)$1	249	106	136	12.8699
UUUAGAGAUGCAGAGGAUGCUAUUUAUGGA	chr12:120903402-120903668(-)$1	266	73	103	11.9067
CACUUUGUUAGGCUCUGCCAAAGAACAGAG	chr17:27612908-27613150(-)$1	242	34	64	11.1987
CAUCAUUGUUGGUUUUGCAAGAAUGAAUGG	chr3:136035701-136035953(+)$1	252	131	161	10.7059
CAUCAGGCAACAGGAGAUGUGUGCACACUG	chr1:211966311-211966554(-)$1	243	84	114	10.9623
CCACUGUGAGACAAGCGGUUACACAAGAUU	chr7:103138463-103138683(-)$1	220	111	141	11.6813
GUAUUUGAGUGAAAGGAUUCUCUUUUUUAG	chr1:62914035-62914259(+)$1	224	70	100	14.7167
CUGCGCUACAUGUACCGGCACAAGGGCACG	chr2:127453526-127453780(+)$1	254	45	75	13.4269
CUCUAGCUGGGUGUACGACCAAGCCAGGGA	chr2:216262304-216262624(-)$1	320	47	77	13.0800
GGCGGAACGCAGCAGCCGCGAAGGAUCCAG	chr2:130948018-130948250(+)$1	232	66	96	12.1416
UUUUAUUUUCUUCCCUAGAGUUAAAUAAAA	chr5:167928985-167929211(+)$1	226	2	32	15.5998

#DB
((..(((((.(((....))).)))))))))	chr2:152670613-152670914(-)$1	1	9	39	13.9981
((((((((((..((...)).))))))))))	chr11:32608455-32608738(+)$1	1	122	152	11.9239
.((((((((((((....)))))))...)))	chr1:27745392-27745670(-)$1	1	114	144	11.7706
((.((((.(.(((....))).))))).)))	chr9:138774570-138774828(-)$1	1	104	134	13.9014
((((..(((((((....)))))))....))	chr6:33243721-33243939(+)$1	1	21	51	12.1607
(((.((((.(((.....))).)))).)...	chr8:97245282-97245488(-)$1	1	35	65	10.8652
(..((((((.(((....))).)))))).))	chr1:220157451-220157696(-)$1	1	202	232	13.0777
(((((((((.(((....))).)))))))))	chr1:51000966-51001203(-)$1	1	186	216	16.6911
(((((..((.(((....))).))...))))	chr11:67376880-67377156(+)$1	1	119	149	12.8419
(((.(...(((((....)).)))....)))	chr8:145161226-145161446(+)$1	1	55	85	11.5146
(..((((((((((....))))))))))...	chr15:64668841-64669095(-)$1	1	156	186	14.7289
(((.(((((.(((....))).))))).)))	chr15:85213861-85214112(-)$1	1	69	99	12.5170
((...(((..(((....))).))).)))))	chr10:11567284-11567492(-)$1	1	48	78	14.6712
(....(((...((....))..))).)))))	chr20:62663190-62663437(+)$1	1	206	236	13.2372
(((.((((..(((....)))..))))..))	chr20:34240721-34241004(-)$1	1	237	267	13.7386
(.(((((((.(((....))))))..)))))	chr12:112237621-112237909(+)$1	1	92	122	12.5453
((((((....(((....)))))))))..))	chr4:79860201-79860480(-)$1	1	243	273	11.4835
(.(((((((((.(....)))))))))))).	chr12:7079548-7079793(-)$1	1	105	135	12.8072
((((.((((((((....))).)))))))))	chr2:63833906-63834172(+)$1	1	102	132	13.0113
(((((((((((((....)))))))))))))	chr8:117738288-117738512(-)$1	1	20	50	14.8459
(((((((((((((....)))))))))))))	chr3:25685137-25685360(-)$1	1	167	197	14.8459
..((..(((((((....)))))))..))..	chr1:112305200-112305487(+)$1	1	225	255	11.0550
...((((...(((....)))...))))...	chr20:33645246-33645475(-)$1	1	149	179	14.6267
((.(((.(((.((....)).)))))).)))	chr2:223791659-223792008(+)$1	1	179	209	11.2006
((((.(((..(((....)))))).))))..	chr19:48259711-48259961(+)$1	1	19	49	13.3672
(.(((.(((.(((....))).))).))).)	chr16:3727514-3727760(-)$1	1	45	75	14.6779
(((((((...(((...)))....))).)))	chr21:35275793-35276045(-)$1	1	195	225	11.6655
(((((..((.(((....))).)).))))))	chr17:7477492-7477714(+)$1	1	21	51	14.6009
.(((((((..(((....)))....))))))	chr11:62327119-62327332(-)$1	1	163	193	13.8615
.(((..(((((((....)))...)))).))	chrX:118604774-118604980(+)$1	1	22	52	12.2280
(((((((((.(((....))).)))......	chr1:52301704-52301971(-)$1	1	30	60	12.9081
..(((((((((((...))))))))))))).	chr1:44441878-44442097(+)$1	1	110	140	11.1489
(...(((((((((....)))))))))....	chrX:24094784-24095054(+)$1	1	220	250	13.4659
(((((((((.(((....)))))))...)))	chr1:109485994-109486247(-)$1	1	215	245	14.7950
((((((((.(((.....))).)))))))))	chr1:198703361-198703641(+)$1	1	34	64	13.6996
(((((.(((.(((....))))))....)))	chr12:50152972-50153205(+)$1	1	182	212	14.9733
(((..(((..(((....)))..)))...))	chr11:95545998-95546254(+)$1	1	63	93	14.8283
.((((.(((..(((...)))...))).)))	chr2:10937140-10937381(-)$1	1	30	60	11.6111
(..((((...(((....)))))))))))))	chr19:39191208-39191457(+)$1	1	106	136	12.8699
((((.(((((((.....))).)))).))))	chr12:120903402-120903668(-)$1	1	73	103	11.9067
..(((((((.(((...)))....)))))))	chr17:27612908-27613150(-)$1	1	34	64	11.1987
(((((((.(((......))).)))).))).	chr3:136035701-136035953(+)$1	1	131	161	10.7059
((((((((((((.....))).)))...)))	chr1:211966311-211966554(-)$1	1	84	114	10.9623
((((((((.(((.....))).))).))...	chr7:103138463-103138683(-)$1	1	111	141	11.6813
(((...(((.(((....))).)))...)).	chr1:62914035-62914259(+)$1	1	70	100	14.7167
((((.((...(((....)))..)).))).)	chr2:127453526-127453780(+)$1	1	45	75	13.4269
((...(((.(((.....))).))).)))))	chr2:216262304-216262624(-)$1	1	47	77	13.0800
((((((.(...((....))....).))).)	chr2:130948018-130948250(+)$1	1	66	96	12.1416
((((((((..(((....)))..))))))))	chr5:167928985-167929211(+)$1	1	2	32	15.5998

#PSSM
i : 0.14	= : 0.14	e : 0.10	d : 0.10	g : 0.08	f : 0.08	b : 0.08	c : 0.06	" : 0.04	h : 0.04	: : 0.04	! : 0.02	) : 0.02	$ : 0.02	( : 0.02	
= : 0.14	i : 0.12	e : 0.10	d : 0.10	c : 0.08	! : 0.08	g : 0.08	f : 0.06	[ : 0.06	h : 0.04	" : 0.04	# : 0.02	) : 0.02	( : 0.02	b : 0.02	
= : 0.16	d : 0.10	g : 0.10	i : 0.10	! : 0.08	" : 0.08	c : 0.08	e : 0.06	f : 0.06	[ : 0.04	h : 0.04	b : 0.04	a : 0.02	# : 0.02	
= : 0.18	d : 0.16	c : 0.10	[ : 0.08	" : 0.08	i : 0.08	g : 0.08	f : 0.06	! : 0.04	e : 0.04	b : 0.04	# : 0.02	h : 0.02	
= : 0.16	d : 0.16	i : 0.10	! : 0.08	[ : 0.08	c : 0.08	e : 0.06	f : 0.06	" : 0.06	g : 0.06	a : 0.02	# : 0.02	h : 0.02	b : 0.02	
d : 0.18	c : 0.18	= : 0.14	! : 0.10	e : 0.08	i : 0.08	[ : 0.06	f : 0.04	" : 0.04	g : 0.04	h : 0.02	b : 0.02	
c : 0.28	d : 0.18	= : 0.14	g : 0.10	e : 0.06	i : 0.06	! : 0.04	[ : 0.04	f : 0.02	" : 0.02	# : 0.02	b : 0.02	
c : 0.28	= : 0.14	g : 0.10	d : 0.10	" : 0.10	e : 0.06	i : 0.06	[ : 0.04	b : 0.04	f : 0.02	# : 0.02	a : 0.02	
c : 0.20	= : 0.12	! : 0.12	" : 0.12	g : 0.08	[ : 0.08	e : 0.06	d : 0.06	b : 0.04	i : 0.04	a : 0.02	f : 0.02	# : 0.02	
[ : 0.28	c : 0.18	! : 0.14	" : 0.12	= : 0.10	g : 0.06	i : 0.04	# : 0.02	e : 0.02	d : 0.02	
c : 0.71	= : 0.08	g : 0.06	! : 0.04	" : 0.04	i : 0.04	[ : 0.02	
c : 0.69	b : 0.08	= : 0.08	g : 0.06	! : 0.02	[ : 0.02	i : 0.02	o : 0.02	
c : 0.57	n : 0.12	b : 0.10	= : 0.08	g : 0.06	a : 0.02	i : 0.02	o : 0.02	
m : 0.75	n : 0.12	l : 0.06	b : 0.02	c : 0.02	o : 0.02	
m : 0.75	n : 0.12	l : 0.10	o : 0.02	
m : 0.75	n : 0.12	l : 0.10	o : 0.02	
m : 0.75	n : 0.12	l : 0.04	c : 0.04	= : 0.02	o : 0.02	
c : 0.71	b : 0.10	= : 0.08	g : 0.06	a : 0.02	i : 0.02	
c : 0.71	b : 0.10	= : 0.08	g : 0.06	i : 0.04	
c : 0.67	= : 0.08	] : 0.06	g : 0.06	4 : 0.06	i : 0.04	2 : 0.02	
] : 0.38	= : 0.10	c : 0.10	2 : 0.10	4 : 0.08	g : 0.06	3 : 0.06	i : 0.04	d : 0.04	f : 0.02	
c : 0.26	= : 0.14	d : 0.10	2 : 0.08	4 : 0.08	e : 0.06	g : 0.06	3 : 0.06	f : 0.04	b : 0.04	i : 0.04	a : 0.02	
c : 0.28	= : 0.14	d : 0.14	4 : 0.08	e : 0.06	g : 0.06	b : 0.06	i : 0.06	3 : 0.06	f : 0.04	
c : 0.24	d : 0.18	= : 0.14	g : 0.08	e : 0.06	4 : 0.06	i : 0.06	f : 0.04	] : 0.04	3 : 0.02	2 : 0.02	b : 0.02	a : 0.02	
d : 0.16	= : 0.14	] : 0.14	3 : 0.10	i : 0.08	c : 0.08	e : 0.06	4 : 0.06	f : 0.04	2 : 0.04	g : 0.04	6 : 0.02	b : 0.02	
= : 0.14	3 : 0.12	d : 0.12	i : 0.12	c : 0.12	e : 0.08	4 : 0.06	] : 0.06	f : 0.04	g : 0.04	b : 0.04	2 : 0.02	6 : 0.02	
= : 0.16	i : 0.12	3 : 0.10	] : 0.10	4 : 0.08	d : 0.08	g : 0.08	c : 0.08	f : 0.04	2 : 0.04	b : 0.04	a : 0.02	e : 0.02	6 : 0.02	
= : 0.14	i : 0.10	c : 0.10	d : 0.10	g : 0.10	3 : 0.08	b : 0.08	e : 0.06	4 : 0.06	] : 0.04	2 : 0.04	f : 0.02	a : 0.02	6 : 0.02	h : 0.02	
= : 0.14	g : 0.14	i : 0.10	e : 0.08	d : 0.08	b : 0.08	c : 0.06	4 : 0.06	3 : 0.06	] : 0.06	f : 0.04	h : 0.04	2 : 0.02	6 : 0.02	
= : 0.14	g : 0.14	i : 0.10	e : 0.10	3 : 0.08	d : 0.08	c : 0.06	4 : 0.06	f : 0.04	h : 0.04	b : 0.04	] : 0.04	2 : 0.04	6 : 0.02	

#score	640.182866668125
#seq	49
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_CDS_m1_run1.txt

#BEAR
cc!!dddd####ccc####==========cccccc[ccc[	chr12:49658768-49659070(+)$1	302	128	168	10.9231
[ccc[eeeeegggggggccclllccc]ggggggg]eeeee	chr5:1801446-1801708(+)$1	262	139	179	9.8133
======[ccc!!eeeeemmmmeeeee22ccc=========	chr20:30193032-30193344(+)$1	312	247	287	13.7424
f!!eeeee$$$$$cccooooooccc4444eeeee333fff	chr12:56510457-56510677(+)$1	220	176	216	12.8303
eeeee[dddd!!ccc[bboooooobb22ccc22dddd]ee	chr11:32605279-32605544(+)$1	265	80	120	11.8591
hhh!!ccc!!cccccclllccc]ccc22ccc22hhhhhhh	chr12:49524980-49525274(-)$1	294	15	55	12.3681
=========[eeeee[ammmma]eeeee]===========	chr3:197677705-197677948(+)$1	243	128	168	12.2356
gggg$$$$$dddd[cccooooooccc22dddd22gggggg	chr15:64385842-64386171(-)$1	329	108	148	13.0881
"ddddccc!!a!!bboooooobb22a22ccc]ddddccc3	chr2:47403478-47403739(-)$1	261	209	249	12.5769
hhhhhhhh"""cccddddmmmmdddd333ccc333hhhhh	chr21:35287931-35288190(-)$1	259	113	153	13.3347
####dddd[ccc!!bbmmmmbb]ccc]dddd333ffffff	chr5:81574037-81574242(-)$1	205	94	134	10.1512
iiiiiiiii[dddd[bbmmmmbbddddiiiiiiiii]ddd	chr12:120875820-120876105(+)$1	285	136	176	11.4595
dddd!!ccc[dddd[ddddmmmmdddd]dddd]ccc]ddd	chr19:8386336-8386554(+)$1	218	160	200	10.5451
[ggggggg[a"""cccpppppppccc333a]ggggggg]d	chr11:5290985-5291212(-)$1	227	128	168	11.3660
ddddaccc[eeeeecccmmmmccc4444eeeee]ccc]a]	chr12:6643913-6644128(+)$1	215	5	45	11.6481
eeee!!ccc"""cccqqqqqqqqccc22ccc22eeeee22	chr4:39459913-39460161(-)$1	248	101	141	10.5279
eeeee####ccc[bb[ammmma]bb]ccc333eeeee]ee	chr11:63742045-63742316(+)$1	271	181	221	10.7621
[ggggggg[a"""cccpppppppccc333a]ggggggg]d	chr11:5290928-5291136(-)$1	208	52	92	11.3660
eee!!dddd[bb####cccmmmmccc22bb]dddd22eee	chr5:81573552-81573772(-)$1	220	108	148	10.7126
gg[ccc!!bb!!ddddnnnnnddddbb22cccggggggg2	chr6:27775856-27776113(+)$1	257	164	204	10.9183
ddd"""ggggggg[cccooooooccc]ggggggg22dddd	chr6:26104073-26104343(+)$1	270	82	122	12.4882
ggggg[dddd"""a[bbmmmmbb]a333dddd4444gggg	chr12:112846355-112846560(-)$1	205	95	135	13.3887
=ccc[dddd[ddddcccooooooccc22dddddddd]ccc	chr17:26902392-26902664(-)$1	272	32	72	13.3361
dddd"""ccc[axxxxxxxxxxxxxxxa]ccc4444dddd	chr15:45003618-45003913(+)$1	295	212	252	10.0596
gggggga"""ccc[cccmmmmcccccc333a]ggggggga	chr19:18684002-18684228(+)$1	226	131	171	14.2503
cbb!!cccccc[bb[cccnnnnnccc22bb]ccc]ccc22	chr12:131357028-131357263(+)$1	235	106	146	11.1122
eee!!a####ccc[eeeeellleeeee]ccc333a22eee	chr11:5291012-5291270(-)$1	258	209	249	11.4726
[hhhhhhhh[a!!ddddllldddd4444a]hhhhhhhhdd	chr19:49999594-49999824(+)$1	230	135	175	11.2491
iiiiiiii[affffff[allla]ffffff4444a]iiiii	chr14:50052926-50053207(-)$1	281	222	262	11.2361
[ccc!!ccc[ccc[ddddmmmmddddcccccc]ccc]a]c	chr16:202762-203043(+)$1	281	167	207	13.0772
ccc[dddd[dddd[ddddmmmmdddd]dddd]dddd]ccc	chr19:8386439-8386677(+)$1	238	143	183	10.7810
cc]bb:ggggggg[cccooooooccc]ggggggg:ccc[c	chr15:66797025-66797283(-)$1	258	107	147	10.1976
[eeeee"""bb"""cccmmmmccc333bb]eeeee]bb44	chr2:98262431-98262750(+)$1	319	36	76	11.3445
fff[a[bb[a[ccc[bbmmmmbbccca]bb]affffff44	chr12:8088512-8088867(-)$1	355	115	155	10.6977
ffffff!!gggggggddddllldddd22ggggggg22fff	chr7:75931945-75932194(+)$1	249	170	210	10.6664
[ccc[ccc[a!!ccc[ammmma]ccc22accc]ccc]eee	chr7:22862287-22862557(-)$1	270	228	268	16.0789
dddd"""ccc!!bb[ddddllldddd22bb22ccc22ddd	chr12:6645559-6645798(+)$1	239	76	116	11.6027
d[bb[a[bbccc[ddddlllddddccc]bb]a]bb]dddd	chr19:572492-572804(+)$1	312	179	219	10.0064
!!dddd[ccc[ccc"""a[ammmmaa333ccc]ccc]ddd	chr1:33502293-33502576(-)$1	283	117	157	12.1924
ggggg[dddd"""a[bbmmmmbb]a333dddd4444gggg	chr12:112846323-112846555(-)$1	232	90	130	13.3887
d[ccc[bb####ddddoooooodddd22bbcccddddccc	chr15:66795738-66795962(-)$1	224	104	144	13.3937
ffff[bb!!ccc[acccooooooccc]a]ccc4444bbff	chr6:26285544-26285845(-)$1	301	13	53	12.5558
dddddddd$$$$$ddddmmmmdddddddd333dddddddd	chr5:140026967-140027302(-)$1	335	30	70	10.3873
gggggg[ccceeeee[bbmmmmbbeeeee4444ccc]ggg	chr1:228645377-228645637(-)$1	260	207	247	10.7926
gggg[ccc[ccc####bbmmmmbb22cccccc22gggggg	chr6:170862155-170862478(-)$1	323	115	155	11.9828
"""dddd[bb!!cccoooooocccbb]dddd22ddddfff	chr5:132202459-132202692(+)$1	233	15	55	11.1971
[cccggggggg[bb!!bbmmmmbb22bb]ggggggg]ccc	chr6:26124429-26124672(+)$1	243	125	165	10.3577
a!!ccc[acccooooooccc]a]ccc22aiiiiiiiii!!	chr6:26204757-26205049(+)$1	292	16	56	9.9936
!!ccc!!bb!!cccrrrrrrrrrccc]bbccc22dddd]e	chrX:119005747-119006053(+)$1	306	171	211	11.1789
[hhhhhhhh####bbcccmmmmccc333bb22hhhhhhhh	chr5:68462855-68463201(+)$1	346	11	51	12.0999
gggg[ccc[a[ccc[cccmmmmcccccc]a]ccc22gggg	chr9:113018606-113018926(-)$1	320	38	78	13.4768
[dddd[ccca[eeeeeooooooeeeee333a]cccdddd]	chr11:67351833-67352041(+)$1	208	19	59	12.3810
ddbb[dddd$$$$$cccmmmmccc]dddd]bbcccggggg	chr6:27860776-27861050(-)$1	274	186	226	10.3861
gggggccc[bb[ddddmmmmdddd]bb]ccc4444ggggg	chr5:177019109-177019432(+)$1	323	72	112	11.2647
c!!cccdddd"""ddddmmmmdddd333dddd]ccc]ccc	chr10:75541713-75542002(+)$1	289	44	84	13.8361
"bbdddd!!bb[cccooooooccc]bb22dddd]bb4444	chr1:110950106-110950351(-)$1	245	21	61	10.2256
##dddd####eeeeeooooooeeeee22dddd333fffff	chr12:6976647-6976905(+)$1	258	193	233	11.7533
=:iiiiiiiii[ccc!!bbmmmmbb22ccc]iiiiiiiii	chr1:149858488-149858765(+)$1	277	129	169	10.6250
[hhhhhhhh[a!!ddddllldddd4444a]hhhhhhhhdd	chr19:49999624-49999828(+)$1	204	105	145	11.2491

#otherMatches

#Seq PSSM
UUAGUGGGAGAUCCUUGUUGCCGUCCCUUCGCCUCCUUCA	chr12:49658768-49659070(+)$1	302	128	168	10.9231
CGGAGCCUGCCCCUGGGCGCCAGGUGUUUCGGGGUGCGGG	chr5:1801446-1801708(+)$1	262	139	179	9.8133
GGUGGUGCGCUGUCUGUCUGAGCAGAGCGUGGCCAUCUCG	chr20:30193032-30193344(+)$1	312	247	287	13.7424
GCGAGGAGACGAAGGCAAGUCCGCCAUACCUCCUGAACUA	chr12:56510457-56510677(+)$1	220	176	216	12.8303
UCGCGCGGCCCAGUUCCCUUUUCCGGUCGGCGUGGUCUUG	chr11:32605279-32605544(+)$1	265	80	120	11.8591
GGCCAGCGACCGCGGCACCGCCUGUGCCCGCCCGCCCCUC	chr12:49524980-49525274(-)$1	294	15	55	12.3681
GAACUAUGUCUGGAAGGUACGCGUUUUAAAUAUAGUUCUU	chr3:197677705-197677948(+)$1	243	128	168	12.2356
UCGGCCCAUUUGAAGACCAGGAAGUUGAUCAAUCCCGAGG	chr15:64385842-64386171(-)$1	329	108	148	13.0881
UGGAGCGAACUGACUAAACAAAGGAAACUCGCCUCCCUUA	chr2:47403478-47403739(-)$1	261	209	249	12.5769
CCGGGAGAAGAUGGCUGCCCCAGCAGUGUCCGGGCUCUCC	chr21:35287931-35288190(-)$1	259	113	153	13.3347
GACAGGAUGGGUGAGCUGUUGUGGCCGGUUUAAGGGCGCU	chr5:81574037-81574242(-)$1	205	94	134	10.1512
UCUCGGCUGCUGGGUCGGUCCCGCCCACAGCUGGGGCGGC	chr12:120875820-120876105(+)$1	285	136	176	11.4595
GGAGCCAAACGGGCCGGGUCUGAACCCAGCUUCUUUCCUC	chr19:8386336-8386554(+)$1	218	160	200	10.5451
ACUAGCCUGUGGAGCAAGAUGAAUGUGGAAGAGGCUGGAG	chr11:5290985-5291212(-)$1	227	128	168	11.3660
GAGGCGUGUGUGUCGGCCGGGGCCACUAGGCGCUCACUGU	chr12:6643913-6644128(+)$1	215	5	45	11.6481
AAUGAAGACUAUUCUCAGCAAUCAGACUGUCGACAUUCCA	chr4:39459913-39460161(-)$1	248	101	141	10.5279
GAUCCAUUCGUUGCCGCCGGAGGGGAAGCUUGGGAUCAUG	chr11:63742045-63742316(+)$1	271	181	221	10.7621
ACUAGCCUGUGGAGCAAGAUGAAUGUGGAAGAGGCUGGAG	chr11:5290928-5291136(-)$1	208	52	92	11.3660
UCGUGGACUUCGUACUGCUAGGAAGCUCCGUAGUCACCGA	chr5:81573552-81573772(-)$1	220	108	148	10.7126
CGCGCCAAGGCCAAGACCCGCUCUUCUCGGGCCGGGCUUC	chr6:27775856-27776113(+)$1	257	164	204	10.9183
CUUCCACUGCGAUAGGAAUCAUGUCUGGUCGCGGCAAAGG	chr6:26104073-26104343(+)$1	270	82	122	12.4882
UUUAGAUGGCGGGUGAAAAAGUUGAGAAGCCAGAUACUAA	chr12:112846355-112846560(-)$1	205	95	135	13.3887
AUUUGGCCCAUCUGGCCAGGAGAGGCAGCAGAGGGUGAGG	chr17:26902392-26902664(-)$1	272	32	72	13.3361
CCGCUCUGGUCCUUCCUCUCCCGCUCUGCACCCUCUGUGG	chr15:45003618-45003913(+)$1	295	212	252	10.0596
CACUGGCAAAACCAUCACCCUUGAGGUCGAGCCCAGUGAC	chr19:18684002-18684228(+)$1	226	131	171	14.2503
CGCGAUGGCUGCGCAGGGAGAGCCCCAGGUCCAGUUCAAA	chr12:131357028-131357263(+)$1	235	106	146	11.1122
UGUGGAAGAGGCUGGAGGUGAAGCCUUGGGCAGGUAAGCA	chr11:5291012-5291270(-)$1	258	209	249	11.4726
UGCGGACUCGGGGUUGGAUGCCAGGGUGCGGGGUCCGCCU	chr19:49999594-49999824(+)$1	230	135	175	11.2491
AUUUUGGGGAAGCGUUGCCGUGGAGCGCUAGGCUGCUUAA	chr14:50052926-50053207(-)$1	281	222	262	11.2361
AGGACCAUCAUUGUGUCCAUGUGGGCCAAGAUCUCCACGC	chr16:202762-203043(+)$1	281	167	207	13.0772
CGCAGGUAAUCGGGUGGGGGCAUUUGGCCGACUGCCGGCG	chr19:8386439-8386677(+)$1	238	143	183	10.7810
GUGGCAGCAGCCGGGCUGAGAGGAGCGUGGCUGUCUCCUC	chr15:66797025-66797283(-)$1	258	107	147	10.1976
GAGGAGAAAGAAGCCCGCCCCCGGAAGUCCCUCCUGUCUC	chr2:98262431-98262750(+)$1	319	36	76	11.3445
UUCCUGAGGACGUGGAGAAAACUUGCUGCUGAGAAGGACA	chr12:8088512-8088867(-)$1	355	115	155	10.6977
CGACCAGGCCUUCGGGCUGCCCCGGCUGCCGGAGGAGUGG	chr7:75931945-75932194(+)$1	249	170	210	10.6664
CGCUGGGGCUUUAUCCCUCUUGUGAUUUACCUGGGUCAGU	chr7:22862287-22862557(-)$1	270	228	268	16.0789
GCCUUCUUGCCUCUUGUCUCUUAGAUUUGGUCGUAUUGGG	chr12:6645559-6645798(+)$1	239	76	116	11.6027
UGCUGGGCACCCACGGAGCCUCCGGGGCUGGUGAGGAGCG	chr19:572492-572804(+)$1	312	179	219	10.0064
AACUGGUGGCAGUGAGAGACUUCGGCGGACAUGGCUCCCA	chr1:33502293-33502576(-)$1	283	117	157	12.1924
UUUAGAUGGCGGGUGAAAAAGUUGAGAAGCCAGAUACUAA	chr12:112846323-112846555(-)$1	232	90	130	13.3887
CGCCCACUGAUAUCGGUGUACUCCGAAAAGGGGGAGUCAU	chr15:66795738-66795962(-)$1	224	104	144	13.3937
AUGCGCGCUUUCAGUCUUCAAUUAGGUCCGAAUUCCCGGC	chr6:26285544-26285845(-)$1	301	13	53	12.5558
CCCUGCCUCAUGCAGCCUAUGGGCUAGGCUUUAGGGUCCG	chr5:140026967-140027302(-)$1	335	30	70	10.3873
GCGUGCACCGGUUGCUCCGCAAGGGCAACUAUUCGGAGCG	chr1:228645377-228645637(-)$1	260	207	247	10.7926
AGCAAGUGUCGGAUCCGCAGGCGCAGCCGUGCGAUGUUGU	chr6:170862155-170862478(-)$1	323	115	155	11.9828
GAGUCUGGGGUUGGGGAUGGACCCCCGCGGGGACUGCGGC	chr5:132202459-132202692(+)$1	233	15	55	11.1971
ACCGCCUGCUCCGUAAAGGCAACUACGCAGAGCGGGUUGG	chr6:26124429-26124672(+)$1	243	125	165	10.3577
GUUUUCAGUCUUCAUUUAGGUCCGAAUUCCCGGCAUAUAA	chr6:26204757-26205049(+)$1	292	16	56	9.9936
CUUGUUGAUUCCAGGACUGGCUACUGCGUACAUCCACAGG	chrX:119005747-119006053(+)$1	306	171	211	11.1789
GCAUUCUCUGCGACCGGCAGCCGCCAAUGGGAAGGGAGUG	chr5:68462855-68463201(+)$1	346	11	51	12.0999
gcgcagcgacgggcgcggagguccggccgggcgcgcgcgc	chr9:113018606-113018926(-)$1	320	38	78	13.4768
CCUGCACUCCUGACCCCUCCCCGGGUUGCUGCGAGGCGGA	chr11:67351833-67352041(+)$1	208	19	59	12.3810
GCUGGGCUCCAAUUUCCUGUAGGACGAGUGCACCGCCUGC	chr6:27860776-27861050(-)$1	274	186	226	10.3861
GGCCGGCUGCGGCUGCGCAGGCAGGUGGAGCAAGAUGGCU	chr5:177019109-177019432(+)$1	323	72	112	11.2647
GCCGAUUCGUCCAGCCCGUAGGGGUCACGCGAGGUCACGC	chr10:75541713-75542002(+)$1	289	44	84	13.8361
GCCCCGCUCGCGUCAAGUGACUGAGGCCUGUGGUGGAGAA	chr1:110950106-110950351(-)$1	245	21	61	10.2256
CACCGGUAAGCCCUCGCCGAGGAGGGGUCUggccgggccg	chr12:6976647-6976905(+)$1	258	193	233	11.7533
CACCGCUUGCUGCGCAAAGGCAACUACGCGGAGCGGGUGG	chr1:149858488-149858765(+)$1	277	129	169	10.6250
UGCGGACUCGGGGUUGGAUGCCAGGGUGCGGGGUCCGCCU	chr19:49999624-49999828(+)$1	204	105	145	11.2491

#DB
((..((((....(((....((((((((((((((((.(((.	chr12:49658768-49659070(+)$1	1	128	168	10.9231
.(((.(((((((((((((((...))).))))))).)))))	chr5:1801446-1801708(+)$1	1	139	179	9.8133
((((((.(((..(((((....)))))..))))))))))))	chr20:30193032-30193344(+)$1	1	247	287	13.7424
(..(((((.....(((......)))....)))))...)))	chr12:56510457-56510677(+)$1	1	176	216	12.8303
(((((.((((..(((.((......))..)))..)))).))	chr11:32605279-32605544(+)$1	1	80	120	11.8591
(((..(((..((((((...))).)))..)))..)))))))	chr12:49524980-49525274(-)$1	1	15	55	12.3681
(((((((((.(((((.(....).))))).)))))))))))	chr3:197677705-197677948(+)$1	1	128	168	12.2356
((((.....((((.(((......)))..))))..))))))	chr15:64385842-64386171(-)$1	1	108	148	13.0881
.(((((((..(..((......))..)..))).))))))).	chr2:47403478-47403739(-)$1	1	209	249	12.5769
((((((((...(((((((....))))...)))...)))))	chr21:35287931-35288190(-)$1	1	113	153	13.3347
....((((.(((..((....)).))).))))...))))))	chr5:81574037-81574242(-)$1	1	94	134	10.1512
(((((((((.((((.((....))))))))))))))).)))	chr12:120875820-120876105(+)$1	1	136	176	11.4595
((((..(((.((((.((((....)))).)))).))).)))	chr19:8386336-8386554(+)$1	1	160	200	10.5451
.(((((((.(...(((.......)))...).))))))).)	chr11:5290985-5291212(-)$1	1	128	168	11.3660
((((((((.((((((((....)))....))))).))).).	chr12:6643913-6644128(+)$1	1	5	45	11.6481
((((..(((...(((........)))..)))..)))))..	chr4:39459913-39460161(-)$1	1	101	141	10.5279
(((((....(((.((.(....).)).)))...))))).))	chr11:63742045-63742316(+)$1	1	181	221	10.7621
.(((((((.(...(((.......)))...).))))))).)	chr11:5290928-5291136(-)$1	1	52	92	11.3660
(((..((((.((....(((....)))..)).))))..)))	chr5:81573552-81573772(-)$1	1	108	148	10.7126
((.(((..((..((((.....))))))..)))))))))).	chr6:27775856-27776113(+)$1	1	164	204	10.9183
(((...(((((((.(((......))).)))))))..))))	chr6:26104073-26104343(+)$1	1	82	122	12.4882
(((((.((((...(.((....)).)...))))....))))	chr12:112846355-112846560(-)$1	1	95	135	13.3887
((((.((((.(((((((......)))..)))))))).)))	chr17:26902392-26902664(-)$1	1	32	72	13.3361
((((...(((.(...............).)))....))))	chr15:45003618-45003913(+)$1	1	212	252	10.0596
(((((((...(((.(((....))))))...).))))))))	chr19:18684002-18684228(+)$1	1	131	171	14.2503
(((..((((((.((.(((.....)))..)).))).)))..	chr12:131357028-131357263(+)$1	1	106	146	11.1122
(((..(....(((.(((((...))))).)))...)..)))	chr11:5291012-5291270(-)$1	1	209	249	11.4726
.((((((((.(..((((...))))....).))))))))))	chr19:49999594-49999824(+)$1	1	135	175	11.2491
((((((((.(((((((.(...).))))))....).)))))	chr14:50052926-50053207(-)$1	1	222	262	11.2361
.(((..(((.(((.((((....)))))))))).))).).)	chr16:202762-203043(+)$1	1	167	207	13.0772
(((.((((.((((.((((....)))).)))).)))).)))	chr19:8386439-8386677(+)$1	1	143	183	10.7810
)).)).(((((((.(((......))).))))))).(((.(	chr15:66797025-66797283(-)$1	1	107	147	10.1976
.(((((...((...(((....)))...)).))))).))..	chr2:98262431-98262750(+)$1	1	36	76	11.3445
(((.(.((.(.(((.((....)))))).)).)))))))..	chr12:8088512-8088867(-)$1	1	115	155	10.6977
((((((..(((((((((((...))))..)))))))..)))	chr7:75931945-75932194(+)$1	1	170	210	10.6664
.(((.(((.(..(((.(....).)))..)))).))).)))	chr7:22862287-22862557(-)$1	1	228	268	16.0789
((((...(((..((.((((...))))..))..)))..)))	chr12:6645559-6645798(+)$1	1	76	116	11.6027
(.((.(.(((((.((((...))))))).)).).)).))))	chr19:572492-572804(+)$1	1	179	219	10.0064
..((((.(((.(((...(.(....))...))).))).)))	chr1:33502293-33502576(-)$1	1	117	157	12.1924
(((((.((((...(.((....)).)...))))....))))	chr12:112846323-112846555(-)$1	1	90	130	13.3887
(.(((.((....((((......))))..))))))))))))	chr15:66795738-66795962(-)$1	1	104	144	13.3937
((((.((..(((.((((......))).).)))....))))	chr6:26285544-26285845(-)$1	1	13	53	12.5558
((((((((.....((((....))))))))...))))((((	chr5:140026967-140027302(-)$1	1	30	70	10.3873
((((((.((((((((.((....)))))))....))).)))	chr1:228645377-228645637(-)$1	1	207	247	10.7926
((((.(((.(((....((....))..))))))..))))))	chr6:170862155-170862478(-)$1	1	115	155	11.9828
...((((.((..(((......))))).))))..))))(((	chr5:132202459-132202692(+)$1	1	15	55	11.1971
.((((((((((.((..((....))..)).))))))).)))	chr6:26124429-26124672(+)$1	1	125	165	10.3577
(..(((.((((......))).).)))..)(((((((((..	chr6:26204757-26205049(+)$1	1	16	56	9.9936
..(((..((..(((.........))).)))))..)))).)	chrX:119005747-119006053(+)$1	1	171	211	11.1789
.((((((((....(((((....)))...))..))))))))	chr5:68462855-68463201(+)$1	1	11	51	12.0999
((((.(((.(.(((.(((....)))))).).)))..))))	chr9:113018606-113018926(-)$1	1	38	78	13.4768
.((((.((((.(((((......)))))...).))))))).	chr11:67351833-67352041(+)$1	1	19	59	12.3810
))((.((((.....(((....))).)))).))((((((((	chr6:27860776-27861050(-)$1	1	186	226	10.3861
((((((((.((.((((....)))).)).)))....)))))	chr5:177019109-177019432(+)$1	1	72	112	11.2647
(..(((((((...((((....))))...)))).))).)))	chr10:75541713-75542002(+)$1	1	44	84	13.8361
.((((((..((.(((......))).))..)))).))....	chr1:110950106-110950351(-)$1	1	21	61	10.2256
..((((....(((((......)))))..))))...)))))	chr12:6976647-6976905(+)$1	1	193	233	11.7533
).(((((((((.(((..((....))..))).)))))))))	chr1:149858488-149858765(+)$1	1	129	169	10.6250
.((((((((.(..((((...))))....).))))))))))	chr19:49999624-49999828(+)$1	1	105	145	11.2491

#PSSM
[ : 0.18	g : 0.15	d : 0.15	c : 0.08	e : 0.08	= : 0.06	f : 0.06	" : 0.05	h : 0.03	# : 0.03	i : 0.03	! : 0.03	a : 0.01	
g : 0.18	d : 0.15	c : 0.13	e : 0.10	! : 0.08	h : 0.08	f : 0.05	= : 0.03	# : 0.03	i : 0.03	b : 0.03	[ : 0.03	" : 0.01	: : 0.01	
g : 0.16	d : 0.16	c : 0.13	e : 0.10	h : 0.08	! : 0.06	b : 0.06	i : 0.05	f : 0.05	= : 0.03	# : 0.01	[ : 0.01	] : 0.01	" : 0.01	
d : 0.18	c : 0.16	g : 0.16	! : 0.08	e : 0.08	h : 0.06	i : 0.05	b : 0.05	= : 0.03	[ : 0.03	f : 0.03	# : 0.01	" : 0.01	
d : 0.16	[ : 0.13	g : 0.13	! : 0.11	c : 0.08	e : 0.06	h : 0.06	i : 0.05	" : 0.05	= : 0.03	a : 0.03	$ : 0.01	b : 0.01	f : 0.01	
d : 0.18	c : 0.18	[ : 0.10	g : 0.08	h : 0.06	! : 0.06	e : 0.05	i : 0.05	" : 0.05	= : 0.03	a : 0.03	$ : 0.01	# : 0.01	: : 0.01	f : 0.01	b : 0.01	
d : 0.22	c : 0.20	[ : 0.08	g : 0.08	h : 0.06	i : 0.05	# : 0.05	! : 0.05	" : 0.05	b : 0.05	e : 0.03	= : 0.01	$ : 0.01	a : 0.01	
c : 0.28	d : 0.18	g : 0.08	h : 0.06	! : 0.06	b : 0.06	i : 0.05	# : 0.05	e : 0.03	" : 0.03	= : 0.01	$ : 0.01	[ : 0.01	a : 0.01	
c : 0.18	[ : 0.18	d : 0.11	# : 0.08	! : 0.06	b : 0.06	g : 0.06	$ : 0.05	" : 0.05	h : 0.05	i : 0.03	e : 0.01	= : 0.01	
c : 0.20	[ : 0.13	a : 0.11	d : 0.10	# : 0.08	b : 0.08	g : 0.06	$ : 0.05	! : 0.05	" : 0.05	e : 0.03	i : 0.01	
c : 0.18	! : 0.11	" : 0.11	g : 0.08	d : 0.08	[ : 0.08	e : 0.06	b : 0.06	# : 0.05	$ : 0.05	a : 0.05	f : 0.01	i : 0.01	
c : 0.23	! : 0.15	" : 0.11	e : 0.08	d : 0.08	[ : 0.08	g : 0.06	# : 0.05	$ : 0.05	b : 0.01	a : 0.01	f : 0.01	o : 0.01	
c : 0.27	d : 0.13	e : 0.10	" : 0.10	g : 0.06	! : 0.06	$ : 0.05	[ : 0.05	# : 0.05	b : 0.05	x : 0.01	f : 0.01	o : 0.01	
c : 0.27	d : 0.18	[ : 0.11	e : 0.10	b : 0.10	a : 0.05	g : 0.03	# : 0.03	! : 0.01	x : 0.01	f : 0.01	" : 0.01	o : 0.01	$ : 0.01	
c : 0.33	d : 0.18	[ : 0.13	e : 0.10	b : 0.06	g : 0.03	# : 0.03	x : 0.01	f : 0.01	" : 0.01	! : 0.01	o : 0.01	r : 0.01	
c : 0.27	d : 0.23	[ : 0.08	o : 0.08	b : 0.08	# : 0.05	e : 0.05	! : 0.03	g : 0.01	q : 0.01	x : 0.01	f : 0.01	" : 0.01	r : 0.01	
c : 0.22	d : 0.18	o : 0.13	b : 0.13	a : 0.05	e : 0.03	m : 0.03	p : 0.03	# : 0.01	g : 0.01	l : 0.01	q : 0.01	n : 0.01	x : 0.01	[ : 0.01	" : 0.01	r : 0.01	! : 0.01	
m : 0.27	o : 0.20	c : 0.10	d : 0.10	b : 0.08	l : 0.06	p : 0.03	a : 0.03	# : 0.01	q : 0.01	n : 0.01	x : 0.01	e : 0.01	r : 0.01	
m : 0.40	o : 0.22	l : 0.08	c : 0.05	d : 0.05	p : 0.03	n : 0.03	# : 0.01	q : 0.01	x : 0.01	e : 0.01	[ : 0.01	r : 0.01	b : 0.01	
m : 0.45	o : 0.22	l : 0.11	c : 0.05	p : 0.03	n : 0.03	= : 0.01	q : 0.01	x : 0.01	a : 0.01	r : 0.01	
m : 0.44	o : 0.22	l : 0.08	d : 0.06	p : 0.03	n : 0.03	= : 0.01	c : 0.01	b : 0.01	q : 0.01	x : 0.01	] : 0.01	r : 0.01	
m : 0.20	o : 0.15	c : 0.11	d : 0.11	b : 0.10	a : 0.08	l : 0.06	e : 0.03	p : 0.03	= : 0.01	q : 0.01	x : 0.01	n : 0.01	r : 0.01	
d : 0.22	c : 0.15	b : 0.13	] : 0.11	o : 0.10	e : 0.06	m : 0.06	p : 0.03	= : 0.01	l : 0.01	q : 0.01	x : 0.01	n : 0.01	r : 0.01	
c : 0.44	d : 0.25	e : 0.08	b : 0.08	] : 0.03	= : 0.01	o : 0.01	2 : 0.01	x : 0.01	f : 0.01	m : 0.01	
c : 0.37	d : 0.18	e : 0.10	b : 0.06	2 : 0.05	4 : 0.05	a : 0.05	] : 0.05	= : 0.01	x : 0.01	f : 0.01	3 : 0.01	
c : 0.33	d : 0.16	e : 0.10	b : 0.08	3 : 0.08	4 : 0.06	2 : 0.05	a : 0.03	= : 0.01	] : 0.01	x : 0.01	f : 0.01	
2 : 0.27	3 : 0.15	] : 0.13	c : 0.10	4 : 0.06	e : 0.06	d : 0.06	b : 0.06	= : 0.01	x : 0.01	f : 0.01	a : 0.01	
2 : 0.28	3 : 0.16	d : 0.08	] : 0.08	c : 0.08	4 : 0.06	g : 0.05	b : 0.05	e : 0.03	a : 0.03	= : 0.01	i : 0.01	f : 0.01	
d : 0.20	c : 0.18	b : 0.15	3 : 0.10	] : 0.08	g : 0.06	a : 0.06	e : 0.03	2 : 0.03	= : 0.01	4 : 0.01	i : 0.01	f : 0.01	
c : 0.30	d : 0.18	b : 0.11	g : 0.08	3 : 0.06	] : 0.06	a : 0.05	e : 0.03	i : 0.03	4 : 0.03	= : 0.01	
c : 0.30	d : 0.18	] : 0.13	g : 0.08	e : 0.05	i : 0.03	3 : 0.03	a : 0.03	h : 0.03	4 : 0.03	2 : 0.03	= : 0.01	b : 0.01	
c : 0.22	d : 0.15	g : 0.11	2 : 0.10	] : 0.06	3 : 0.06	e : 0.05	i : 0.05	4 : 0.05	= : 0.03	h : 0.03	a : 0.03	b : 0.01	
g : 0.15	c : 0.11	2 : 0.11	4 : 0.11	d : 0.10	] : 0.10	e : 0.06	3 : 0.06	i : 0.05	h : 0.05	= : 0.03	f : 0.01	
c : 0.20	g : 0.15	d : 0.13	4 : 0.08	e : 0.06	h : 0.06	3 : 0.06	2 : 0.05	i : 0.05	= : 0.03	] : 0.03	a : 0.01	f : 0.01	b : 0.01	
c : 0.18	d : 0.15	g : 0.13	4 : 0.08	h : 0.06	] : 0.05	3 : 0.05	i : 0.05	e : 0.05	= : 0.03	f : 0.03	2 : 0.03	b : 0.03	a : 0.01	: : 0.01	
d : 0.15	g : 0.15	c : 0.15	2 : 0.10	h : 0.08	i : 0.06	4 : 0.06	e : 0.05	f : 0.05	= : 0.03	] : 0.03	[ : 0.01	3 : 0.01	b : 0.01	
g : 0.18	] : 0.16	d : 0.15	c : 0.08	h : 0.08	2 : 0.06	e : 0.05	f : 0.05	i : 0.05	= : 0.03	b : 0.03	3 : 0.01	4 : 0.01	
g : 0.20	d : 0.16	c : 0.15	f : 0.10	e : 0.08	h : 0.08	] : 0.05	i : 0.05	= : 0.03	b : 0.03	a : 0.01	4 : 0.01	
d : 0.18	g : 0.16	c : 0.11	e : 0.10	f : 0.10	] : 0.06	h : 0.05	4 : 0.05	= : 0.03	2 : 0.03	i : 0.03	a : 0.01	[ : 0.01	! : 0.01	
d : 0.20	g : 0.13	e : 0.11	c : 0.11	f : 0.10	h : 0.05	2 : 0.05	4 : 0.05	= : 0.03	] : 0.03	i : 0.03	[ : 0.01	3 : 0.01	a : 0.01	! : 0.01	

#score	689.9952183501762
#seq	59
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_transcript_m1_run2.txt

#BEAR
eeee[gggggggbb[cccooooooccc]bb]ggggggg22	chr19:893459-893690(+)$1	231	175	215	13.1157
!!ddddccc"""ffffffmmmmffffff4444ccc]dddd	chr22:21772133-21772400(+)$1	267	160	200	11.5028
ddd[==========[bb[aooooooa]bb==========]	chr6:18260900-18261146(-)$1	246	202	242	14.5260
gggggga[cccaccccccmmmmccc4444ccc]a]ccc]a	chr11:61557156-61557406(-)$1	250	127	167	14.7797
d[ggggggg!!dddd[bbmmmmbb]dddd333ggggggg2	chr1:16640020-16640289(-)$1	269	183	223	12.9872
##iiiiiiiii[aeeeeellleeeee22a]iiiiiiiiih	chr2:178129080-178129369(-)$1	289	107	147	12.9989
ggg:bb[iiiiiiiiiccclllccc22iiiiiiiiibbcc	chr14:102506527-102506754(+)$1	227	143	183	13.8266
==============gggggggiiiiiiiiiiiiiiiiiim	chr7:6076415-6076629(-)$1	214	122	162	11.5793
b"""bb[iiiiiiiiiooooooiiiiiiiii]bb4444bb	chr16:89360374-89360630(-)$1	256	26	66	13.4596
$$$$$dddd[iiiiiiiiillliiiiiiiii]dddd333g	chr3:152044502-152044750(+)$1	248	36	76	12.7176
e"""ggggggg[ddddbbmmmmbb]ddddggggggg4444	chr17:79991773-79992024(+)$1	251	119	159	13.0767
e"""ccc[a"""fffffflllffffff4444a]ccceeee	chr22:38891826-38892041(-)$1	215	113	153	11.9789
iiiiiiiii[dddd[cccnnnnnccc]dddd]iiiiiiii	chr16:68176496-68176759(+)$1	263	180	220	13.8587
:ggggggg[a[ccc[cccmmmmcccccc22a]gggggggf	chr17:76122910-76123196(-)$1	286	144	184	13.5997
#a!!bbdddd[bb"""ccclllccc22bbdddd333bb22	chr7:1496553-1496800(-)$1	247	90	130	12.9528
"""ffffff$$$$$cccnnnnnccc4444ffffff22eee	chr7:148506992-148507248(-)$1	256	96	136	11.6405
d####iiiiiiiiirrrrrrrrriiiiiiiii333ddddB	chr16:23690168-23690412(+)$1	244	22	62	11.6435
"""dddd"""bb"""cccmmmmccc333bb]dddd333dd	chr21:45745613-45745881(+)$1	268	152	192	14.4981
""bb[ggggggg####ccclllccc4444ggggggg]bbc	chr12:49666616-49666866(+)$1	250	157	197	15.3470
a[dddd[ccc[bb!!cccmmmmccc22bbccc]dddd]a]	chr8:103290690-103290929(-)$1	239	169	209	13.5225
a!!ffffff####cccooooooccc4444ffffff22a22	chr19:6739618-6739892(+)$1	274	152	192	13.6244
iiiiiiiiiccc22dddd4444ggggggg]iiiiiiiii3	chr11:5275551-5275802(-)$1	251	157	197	11.3128
$eeeee"""eeeee[cccmmmmccc4444eeeee]eeeee	chr17:79878338-79878589(-)$1	251	92	132	12.9301
eeee:ccc!!ccc!!cccmmmmccc4444ccc333cccCC	chr2:225388829-225389081(-)$1	252	176	216	12.1916
"""eeeee"""ccc[bboooooobbccc]eeeee]fffff	chr11:62334186-62334393(-)$1	207	132	172	12.5146
[gggggggeeeeecccooooooccc]eeeee22ggggggg	chr5:176737580-176737855(-)$1	275	140	180	13.1293
fdddd===========rrrrrrrrr===========>>>>	chr17:64263807-64264045(+)$1	238	83	123	11.9968
========!!dddd[cccmmmmccc]dddd]=========	chr18:70916287-70916670(-)$1	383	178	218	15.9798
ccc!!dddda$$$$$cccmmmmccc22a]dddd]ccc]ff	chr17:65909148-65909390(+)$1	242	39	79	12.8563
ffhhhhhhhh[ccc!!ccclllccc22ccchhhhhhhh44	chr16:70563324-70563591(+)$1	267	182	222	12.0285
eeee"""dddd"""ddddmmmmdddd]dddd4444eeeee	chr12:27074505-27074767(-)$1	262	217	257	11.0821
ddd[ggggggg####bboooooobb4444ggggggg]ddd	chr17:43227556-43227794(+)$1	238	10	50	14.1659
b===========ddddoooooodddd]===========]b	chr8:144887776-144888023(-)$1	247	143	183	15.0237
[ggggggg!!iiiiiiiiillliiiiiiiiiggggggg]c	chr19:34919430-34919676(+)$1	246	110	150	14.9450
eee[iiiiiiiii####ammmma4444iiiiiiiii]eee	chr14:107092635-107092851(+)$1	216	131	171	15.2552
[a[bb!!a!!dddd[cccnnnnnccc]dddd22a22bb]a	chr16:89836408-89836663(-)$1	255	41	81	11.9339
c!!dddd[a"""ffffffmmmmffffff333addddccc]	chr10:972643-972899(-)$1	256	149	189	11.7445
dd[ccc===========nnnnn===========22ccc33	chr13:92000700-92000968(+)$1	268	138	178	14.5278
iii####ggggggg[bb!!ammmma22bb]gggggggiii	chr5:134703861-134704119(-)$1	258	87	127	12.2756
d$$$$$ggggggg!!cccmmmmccc]ggggggg22ddddf	chr4:79775639-79775899(+)$1	260	111	151	14.0544
dd[ccc===========nnnnn===========22ccc33	chr13:92000768-92001012(+)$1	244	70	110	14.5278
========affffff[bbmmmmbb]ffffff4444a]===	chr18:684198-684450(-)$1	252	112	152	12.1054
ffccc####ddddcccooooooccc]dddd]ccc]fffff	chr11:65743934-65744176(+)$1	242	122	162	11.9876
a!!eeeee"""bb!!cccmmmmccc22bbeeeee]a]eee	chr16:3074007-3074300(+)$1	293	181	221	14.3304
d[ccc[a!!eeeee[aooooooa]eeeee333a]cccddd	chr22:20051491-20051760(+)$1	269	43	83	12.5512
d[bb!!eeeee[ddddoooooodddd]eeeee]bb]dddd	chr20:30596084-30596320(+)$1	236	110	150	11.0702
c[bb!!ggggggg"""ccclllccc]ggggggg]bb]ccc	chr1:109505133-109505425(-)$1	292	116	156	14.5320
a[ccc[a[ffffff[bboooooobb22ffffffaccc]a]	chr11:95522585-95522865(-)$1	280	203	243	12.2994
fffff!!a[dddd!!cccmmmmccc22dddd]a22fffff	chr19:39926216-39926440(-)$1	224	31	71	12.9020
cc####ccc!!ccc[cccmmmmccc]ccc>>>>>>>>>>>	chr1:94313106-94313317(+)$1	211	78	118	12.4281
[bb!!dddd!!bb[a[bbmmmmbb]a]bb]dddd333bb]	chr17:56408721-56408998(-)$1	277	134	174	11.7552
ddiiiiiiiii####aooooooa4444iiiiiiiii]ddd	chr12:133383715-133383992(-)$1	277	132	172	15.5540
!!============[cccmmmmccc22============2	chrX:153237072-153237327(-)$1	255	126	166	18.3496
iiiiiiii[dddd[ddddmmmmdddd]ddddiiiiiiiii	chr20:45845114-45845369(-)$1	255	131	171	13.0584
""ggggggg!!fffffflllffffff22ggggggg]ccc2	chr1:46726205-46726468(+)$1	263	181	221	11.8388
ggg!!dddd!!ccc[ddddllldddd]cccddddgggggg	chr16:89027653-89027959(-)$1	306	155	195	12.3493
d!!ffffff[bb"""ccclllccc]bb]ffffff333ddd	chr9:136216197-136216407(+)$1	210	159	199	12.1294
c[bb[a[ggggggg[accclllccc]a]gggggggabb]c	chr6:119501597-119501852(-)$1	255	88	128	14.4736
d[bb!!eeeee[ddddoooooodddd]eeeee]bb]dddd	chr8:139815529-139815791(-)$1	262	114	154	11.0702
c[a[eeeee[bb[bbcccmmmmccc22bb]bbeeeeeacc	chr22:21998369-21998659(+)$1	290	231	271	11.9796

#otherMatches

#Seq PSSM
uugcccaggcuggaaugcaauggcgcgaucuuagcuuguu	chr19:893459-893690(+)$1	231	175	215	13.1157
UUUUGCGAUUUCCAGGACUGCGGUCCUGCACCGUCUGCGG	chr22:21772133-21772400(+)$1	267	160	200	11.5028
uagcaguuuucugugagaguuccaccccugcaggaggcuu	chr6:18260900-18261146(-)$1	246	202	242	14.5260
CAUCUACGUGUGAGCACCCAAGGGUAAGAGCUGCAAUGGG	chr11:61557156-61557406(-)$1	250	127	167	14.7797
UCUGUUGGCCCUGUGCUCAUUUGAUUAUAACUGCCAAUAC	chr1:16640020-16640289(-)$1	269	183	223	12.9872
CAGGUGCUGCCUCGGCCCUCUGGGCCCUGCGGUGGUGCCG	chr2:178129080-178129369(-)$1	289	107	147	12.9989
AGCAGGCGGAGGCGGUGGUGAGGCUGAGCUGCCUUCCCGC	chr14:102506527-102506754(+)$1	227	143	183	13.8266
UCAGGUGCUCUGAGUACUGCUAUAAUCAGGGGUGCUAAAU	chr7:6076415-6076629(-)$1	214	122	162	11.5793
CCGCGUAAGGGAAGCCAACUCAGGCUUUCUUCACCAAAGC	chr16:89360374-89360630(-)$1	256	26	66	13.4596
UUUUCUAAAAAAUUUUUCCCUUGGGAAAAuuauuuauuua	chr3:152044502-152044750(+)$1	248	36	76	12.7176
CCAGCCUUCCCUGGCCCCCGCCGGAGGCCGGGAGGGAGCA	chr17:79991773-79992024(+)$1	251	119	159	13.0767
UCCUACCAGAGAGCUUGCCCAGCAAGUACAGCAGGUGGCC	chr22:38891826-38892041(-)$1	215	113	153	11.9789
aucuaggagucuuuuggguaagucuuuaggguuuccuagg	chr16:68176496-68176759(+)$1	263	180	220	13.8587
UGGGUGGUGUGGACAGCUGCCAGGCGUUGAAGACCACCCC	chr17:76122910-76123196(-)$1	286	144	184	13.5997
agaggcaggaaggacccuccccgagaaccuccuuaggcag	chr7:1496553-1496800(-)$1	247	90	130	12.9528
CUUGCUGCUCACCUCACCUCUUGUGUUCAGGCAGCUCAGC	chr7:148506992-148507248(-)$1	256	96	136	11.6405
GGGAGGAGCGGAGCGGUGCGGAGGCUCUGCUCGGAUCGAG	chr16:23690168-23690412(+)$1	244	22	62	11.6435
GAUCCUGUCUGCACUGGCGUUGGCCUUGGCCCAGGCAGCC	chr21:45745613-45745881(+)$1	268	152	192	14.4981
CAGAGAGCUGUGUGCAUGCUGAGCAAUACCACAGCUGUUG	chr12:49666616-49666866(+)$1	250	157	197	15.3470
UGAGCAUGUGUAAUUUUGGCUACAACUUUUACUUGCUGAA	chr8:103290690-103290929(-)$1	239	169	209	13.5225
GCAUGGAUUGGGGCACUGAGCUGUGGGUAAGUCCAAUCGG	chr19:6739618-6739892(+)$1	274	152	192	13.6244
UGGCAAGAAGGUGCUGACUUCCUUGGGAGAUGCCAUAAAG	chr11:5275551-5275802(-)$1	251	157	197	11.3128
CAGUUCCUCGCCAGAGGCUGCUGCCCUUCCUGGCUGGGCU	chr17:79878338-79878589(-)$1	251	92	132	12.9301
caguauguuugccuuuucuccggaaucuuggcccuacaag	chr2:225388829-225389081(-)$1	252	176	216	12.1916
GUGGAGGGUGUGGGACCAAAGAAGGCCUGUUCUCACCUCU	chr11:62334186-62334393(-)$1	207	132	172	12.5146
CUCUCUGGCAUUGGCAGGUCAGUGCACAAUGAACUGGAGA	chr5:176737580-176737855(-)$1	275	140	180	13.1293
cgucugucugaucuuggaagcuaggcagggucgggccugg	chr17:64263807-64264045(+)$1	238	83	123	11.9968
gaggcuguaccuuuggcccuuuggcaagagagcagucuuu	chr18:70916287-70916670(-)$1	383	178	218	15.9798
AAGUUGGCCCGAAAAGGAGGAAUCCGAGAGGUCCCUUAUU	chr17:65909148-65909390(+)$1	242	39	79	12.8563
AAAUCGUUAGAUCUAUUUCAGAGAAUAAGGCUAAUGAUAA	chr16:70563324-70563591(+)$1	267	182	222	12.0285
aagcgacacagcaaagucgggggacuacuguaacagcuuu	chr12:27074505-27074767(-)$1	262	217	257	11.0821
UCCAGCUGCUGACCGAGAACGAACUGCACCGGCAGCAGGA	chr17:43227556-43227794(+)$1	238	10	50	14.1659
CCUGGCCGUGGGGGCAUCUGCUUGCCUCCCGUGGCCAGUG	chr8:144887776-144888023(-)$1	247	143	183	15.0237
GGGGCUCCAGGGGCUCUGAGGCUCAGGGCCCGGAGCCCGG	chr19:34919430-34919676(+)$1	246	110	150	14.9450
AUGUauaaaagugguaucauauguguguacuuuuauuugu	chr14:107092635-107092851(+)$1	216	131	171	15.2552
UGUGCUCCCUGCAGUGCUCACCCGGCUCUGCCAGCUGCUC	chr16:89836408-89836663(-)$1	255	41	81	11.9339
ucugccuuggccucccagagugcugggauuacaggcguga	chr10:972643-972899(-)$1	256	149	189	11.7445
CCCGCUCCGCGUGGGCUUUGUUAGCCCGCGUGGGCAGCCU	chr13:92000700-92000968(+)$1	268	138	178	14.5278
AGGCUCAAGGAGCUGUGACCAGGUGAACAGAGCUCCUCCU	chr5:134703861-134704119(-)$1	258	87	127	12.2756
uauguugcccaggcuggucucaaccuucugggcucagcug	chr4:79775639-79775899(+)$1	260	111	151	14.0544
CCCGCUCCGCGUGGGCUUUGUUAGCCCGCGUGGGCAGCCU	chr13:92000768-92001012(+)$1	244	70	110	14.5278
ccagccuggucuugaacuccugggcucaagaaauccacag	chr18:684198-684450(-)$1	252	112	152	12.1054
CCGCCCUCUGCUUCCCUCGGCUGGGUGGGCUGGCUGGGGC	chr11:65743934-65744176(+)$1	242	122	162	11.9876
CCUAGGGUUCGGGACGGUACGCACCAGCCACCUUCGCGCC	chr16:3074007-3074300(+)$1	293	181	221	14.3304
CGUCUGCAAAGCCCACGGCAGAGAGGGUUGGAGGAGAGGA	chr22:20051491-20051760(+)$1	269	43	83	12.5512
ucggaagcuaagcagggucgggccugguuaguacuuggau	chr20:30596084-30596320(+)$1	236	110	150	11.0702
uguguuguccaggcuugucucugacuccugggcucaaagg	chr1:109505133-109505425(-)$1	292	116	156	14.5320
GGAGGAGACUGAGGAGCAGGAUGGCGGCCUCGGCCCUGUA	chr11:95522585-95522865(-)$1	280	203	243	12.2994
GGGGUAACAUGGGAGCUGGAGCCGGAGCUCACGGGGCCCC	chr19:39926216-39926440(-)$1	224	31	71	12.9020
gguuccggguucgagucccggcggagucgUAACGCUUUUU	chr1:94313106-94313317(+)$1	211	78	118	12.4281
agggagguagaggaggCAAGUCUGGCGCCAUGCUGAGUCA	chr17:56408721-56408998(-)$1	277	134	174	11.7552
GCUCUGCAGCAGAAACACAGGAGGAGAUGCUGCAGGUGCU	chr12:133383715-133383992(-)$1	277	132	172	15.5540
UUGCCGCUUCGGGGCCUAACUCUAGCUCUUUGAAGCGGCU	chrX:153237072-153237327(-)$1	255	126	166	18.3496
ugauuucacgugccuuggccucccaaagugcugggauuac	chr20:45845114-45845369(-)$1	255	131	171	13.0584
GUUAUUCUCUAGGGAGUGAAAUUCCUGUGGGAGUGUGUCA	chr1:46726205-46726468(+)$1	263	181	221	11.8388
GCUGAGGGUCAGUUGCUAUGGAGUGGGAAUGCCCAGUGCU	chr16:89027653-89027959(-)$1	306	155	195	12.3493
ACUUGACAUGGAAUUUGAGCCUCACUCGGUGUCACCCUUU	chr9:136216197-136216407(+)$1	210	159	199	12.1294
uagaagcugcagugacccaugauggugccacuguacuccg	chr6:119501597-119501852(-)$1	255	88	128	14.4736
ucggaagcuaagcagggucgggccugguuaguacuuggau	chr8:139815529-139815791(-)$1	262	114	154	11.0702
GUGAGCCUGAGGAUGACCAGGAGGUGCCAGCCCAGGCCCA	chr22:21998369-21998659(+)$1	290	231	271	11.9796

#DB
((((.(((((((((.(((......))).)).)))))))..	chr19:893459-893690(+)$1	1	175	215	13.1157
..(((((((...((((((....))))))....))).))))	chr22:21772133-21772400(+)$1	1	160	200	11.5028
(((.((((((((((.((.(......).)))))))))))).	chr6:18260900-18261146(-)$1	1	202	242	14.5260
(((((((.((((((((((....)))....))).).))).)	chr11:61557156-61557406(-)$1	1	127	167	14.7797
(.(((((((..((((.((....)).))))...))))))).	chr1:16640020-16640289(-)$1	1	183	223	12.9872
..(((((((((.((((((...)))))..).))))))))))	chr2:178129080-178129369(-)$1	1	107	147	12.9989
))).((.((((((((((((...)))..)))))))))))((	chr14:102506527-102506754(+)$1	1	143	183	13.8266
))))))))))))))))))))))))))))))(((((((((.	chr7:6076415-6076629(-)$1	1	122	162	11.5793
(...((.(((((((((......))))))))).))....))	chr16:89360374-89360630(-)$1	1	26	66	13.4596
.....((((.(((((((((...))))))))).))))...)	chr3:152044502-152044750(+)$1	1	36	76	12.7176
(...(((((((.((((((....)).)))))))))))....	chr17:79991773-79992024(+)$1	1	119	159	13.0767
(...(((.(...((((((...))))))....).)))))))	chr22:38891826-38892041(-)$1	1	113	153	11.9789
(((((((((.((((.(((.....))).)))).))))))))	chr16:68176496-68176759(+)$1	1	180	220	13.8587
.(((((((.(.(((.(((....))))))..).)))))))(	chr17:76122910-76123196(-)$1	1	144	184	13.5997
.(..((((((.((...(((...)))..))))))...))..	chr7:1496553-1496800(-)$1	1	90	130	12.9528
...((((((.....(((.....)))....))))))..)))	chr7:148506992-148507248(-)$1	1	96	136	11.6405
(....(((((((((.........)))))))))...))))(	chr16:23690168-23690412(+)$1	1	22	62	11.6435
...((((...((...(((....)))...)).))))...))	chr21:45745613-45745881(+)$1	1	152	192	14.4981
..((.(((((((....(((...)))....))))))).)))	chr12:49666616-49666866(+)$1	1	157	197	15.3470
(.((((.(((.((..(((....)))..))))).)))).).	chr8:103290690-103290929(-)$1	1	169	209	13.5225
(..((((((....(((......)))....))))))..)..	chr19:6739618-6739892(+)$1	1	152	192	13.6244
))))))))))))..))))....))))))).))))))))).	chr11:5275551-5275802(-)$1	1	157	197	11.3128
.(((((...(((((.(((....)))....))))).)))))	chr17:79878338-79878589(-)$1	1	92	132	12.9301
)))).(((..(((..(((....)))....)))...)))))	chr2:225388829-225389081(-)$1	1	176	216	12.1916
...(((((...(((.((......))))).))))).)))))	chr11:62334186-62334393(-)$1	1	132	172	12.5146
.(((((((((((((((......))).)))))..)))))))	chr5:176737580-176737855(-)$1	1	140	180	13.1293
((((((((((((((((.........)))))))))))....	chr17:64263807-64264045(+)$1	1	83	123	11.9968
((((((((..((((.(((....))).)))).)))))))))	chr18:70916287-70916670(-)$1	1	178	218	15.9798
(((..(((((.....(((....)))..).)))).))).))	chr17:65909148-65909390(+)$1	1	39	79	12.8563
((((((((((.(((..(((...)))..)))))))))))..	chr16:70563324-70563591(+)$1	1	182	222	12.0285
((((...((((...((((....)))).))))....)))))	chr12:27074505-27074767(-)$1	1	217	257	11.0821
(((.(((((((....((......))....))))))).)))	chr17:43227556-43227794(+)$1	1	10	50	14.1659
((((((((((((((((......)))).))))))))))).)	chr8:144887776-144888023(-)$1	1	143	183	15.0237
.(((((((..(((((((((...)))))))))))))))).)	chr19:34919430-34919676(+)$1	1	110	150	14.9450
(((.(((((((((....(....)....))))))))).)))	chr14:107092635-107092851(+)$1	1	131	171	15.2552
.(.((..(..((((.(((.....))).))))..)..)).)	chr16:89836408-89836663(-)$1	1	41	81	11.9339
(..((((.(...((((((....))))))...)))))))).	chr10:972643-972899(-)$1	1	149	189	11.7445
((.((((((((((((((.....)))))))))))..)))..	chr13:92000700-92000968(+)$1	1	138	178	14.5278
(((....(((((((.((..(....)..)).))))))))))	chr5:134703861-134704119(-)$1	1	87	127	12.2756
(.....(((((((..(((....))).)))))))..)))))	chr4:79775639-79775899(+)$1	1	111	151	14.0544
((.((((((((((((((.....)))))))))))..)))..	chr13:92000768-92001012(+)$1	1	70	110	14.5278
(((((((((((((((.((....)).))))))....).)))	chr18:684198-684450(-)$1	1	112	152	12.1054
(((((....(((((((......))).)))).))).)))))	chr11:65743934-65744176(+)$1	1	122	162	11.9876
(..(((((...((..(((....)))..))))))).).)))	chr16:3074007-3074300(+)$1	1	181	221	14.3304
(.(((.(..(((((.(......).)))))...).))))))	chr22:20051491-20051760(+)$1	1	43	83	12.5512
(.((..(((((.((((......)))).))))).)).))))	chr20:30596084-30596320(+)$1	1	110	150	11.0702
(.((..(((((((...(((...))).))))))).)).)))	chr1:109505133-109505425(-)$1	1	116	156	14.5320
(.(((.(.((((((.((......))..)))))))))).).	chr11:95522585-95522865(-)$1	1	203	243	12.2994
(((((..(.((((..(((....)))..)))).)..)))))	chr19:39926216-39926440(-)$1	1	31	71	12.9020
((....(((..(((.(((....))).)))...........	chr1:94313106-94313317(+)$1	1	78	118	12.4281
.((..((((..((.(.((....)).).)).))))...)).	chr17:56408721-56408998(-)$1	1	134	174	11.7552
(((((((((((....(......)....))))))))).)))	chr12:133383715-133383992(-)$1	1	132	172	15.5540
..((((((((((((.(((....)))..)))))))))))).	chrX:153237072-153237327(-)$1	1	126	166	18.3496
((((((((.((((.((((....)))).)))))))))))))	chr20:45845114-45845369(-)$1	1	131	171	13.0584
..(((((((..((((((...))))))..))))))).))).	chr1:46726205-46726468(+)$1	1	181	221	11.8388
(((..((((..(((.((((...)))).)))))))))))))	chr16:89027653-89027959(-)$1	1	155	195	12.3493
(..((((((.((...(((...))).)).))))))...)))	chr9:136216197-136216407(+)$1	1	159	199	12.1294
(.((.(.(((((((.((((...))).).)))))))))).)	chr6:119501597-119501852(-)$1	1	88	128	14.4736
(.((..(((((.((((......)))).))))).)).))))	chr8:139815529-139815791(-)$1	1	114	154	11.0702
(.(.(((((.((.(((((....)))..)).))))))))))	chr22:21998369-21998659(+)$1	1	231	271	11.9796

#PSSM
d : 0.19	e : 0.09	c : 0.09	" : 0.08	i : 0.06	a : 0.06	[ : 0.06	f : 0.06	g : 0.05	= : 0.05	! : 0.03	# : 0.03	b : 0.03	$ : 0.03	: : 0.01	
[ : 0.15	" : 0.13	! : 0.09	d : 0.09	g : 0.09	e : 0.08	= : 0.06	i : 0.06	f : 0.05	# : 0.03	$ : 0.03	a : 0.03	c : 0.03	b : 0.01	
g : 0.13	i : 0.09	" : 0.09	b : 0.09	e : 0.08	d : 0.08	= : 0.08	! : 0.08	c : 0.06	[ : 0.05	$ : 0.03	# : 0.03	h : 0.01	f : 0.01	a : 0.01	
e : 0.09	g : 0.09	b : 0.09	d : 0.08	i : 0.08	= : 0.08	c : 0.08	[ : 0.06	! : 0.06	f : 0.06	" : 0.05	# : 0.05	$ : 0.03	: : 0.01	h : 0.01	
g : 0.13	= : 0.09	i : 0.09	c : 0.09	! : 0.09	d : 0.08	b : 0.06	f : 0.06	e : 0.06	[ : 0.05	# : 0.05	$ : 0.03	: : 0.01	h : 0.01	" : 0.01	
g : 0.16	d : 0.13	= : 0.11	i : 0.11	! : 0.08	c : 0.06	e : 0.06	b : 0.05	f : 0.05	# : 0.05	[ : 0.03	h : 0.01	" : 0.01	$ : 0.01	a : 0.01	
g : 0.18	= : 0.15	i : 0.11	d : 0.11	e : 0.08	c : 0.06	[ : 0.06	a : 0.05	f : 0.05	" : 0.03	! : 0.03	# : 0.03	h : 0.01	
g : 0.21	= : 0.15	i : 0.15	d : 0.09	e : 0.08	c : 0.06	[ : 0.06	f : 0.05	" : 0.03	a : 0.03	h : 0.01	# : 0.01	! : 0.01	
g : 0.16	i : 0.13	= : 0.11	d : 0.09	! : 0.08	c : 0.06	f : 0.06	" : 0.06	e : 0.06	a : 0.05	[ : 0.05	h : 0.01	# : 0.01	
! : 0.15	g : 0.13	= : 0.11	" : 0.09	i : 0.09	d : 0.08	e : 0.08	[ : 0.06	c : 0.05	a : 0.03	f : 0.03	$ : 0.01	# : 0.01	h : 0.01	
g : 0.13	i : 0.13	= : 0.11	d : 0.11	" : 0.08	! : 0.08	e : 0.08	[ : 0.06	c : 0.05	b : 0.05	$ : 0.03	f : 0.03	# : 0.01	
= : 0.11	d : 0.11	c : 0.11	b : 0.11	g : 0.09	i : 0.09	" : 0.06	[ : 0.06	# : 0.05	e : 0.05	f : 0.05	$ : 0.03	a : 0.01	
d : 0.18	c : 0.11	f : 0.09	= : 0.09	i : 0.09	b : 0.08	# : 0.06	g : 0.06	" : 0.05	e : 0.05	$ : 0.03	a : 0.01	2 : 0.01	[ : 0.01	
c : 0.15	d : 0.13	f : 0.09	= : 0.09	i : 0.08	" : 0.08	! : 0.08	# : 0.06	e : 0.05	b : 0.03	$ : 0.03	g : 0.03	[ : 0.03	2 : 0.01	
[ : 0.24	d : 0.13	! : 0.09	f : 0.08	c : 0.08	i : 0.06	" : 0.06	# : 0.06	= : 0.05	e : 0.01	g : 0.01	r : 0.01	$ : 0.01	a : 0.01	b : 0.01	
c : 0.36	d : 0.13	b : 0.08	f : 0.06	i : 0.06	[ : 0.05	= : 0.05	a : 0.05	" : 0.03	# : 0.03	e : 0.01	g : 0.01	r : 0.01	! : 0.01	
c : 0.41	b : 0.15	o : 0.15	f : 0.06	d : 0.06	i : 0.03	r : 0.03	= : 0.03	e : 0.01	g : 0.01	# : 0.01	
c : 0.39	o : 0.19	b : 0.06	d : 0.06	f : 0.05	n : 0.05	i : 0.03	r : 0.03	[ : 0.01	e : 0.01	g : 0.01	a : 0.01	! : 0.01	l : 0.01	
m : 0.38	o : 0.21	c : 0.09	n : 0.08	l : 0.06	i : 0.03	r : 0.03	a : 0.01	g : 0.01	4 : 0.01	! : 0.01	d : 0.01	
m : 0.38	o : 0.23	l : 0.21	n : 0.08	r : 0.03	g : 0.01	4 : 0.01	a : 0.01	
m : 0.39	o : 0.23	l : 0.19	n : 0.08	r : 0.03	g : 0.01	4 : 0.01	f : 0.01	
m : 0.39	o : 0.23	l : 0.15	n : 0.08	f : 0.03	r : 0.03	e : 0.01	i : 0.01	4 : 0.01	c : 0.01	
c : 0.41	d : 0.09	o : 0.08	f : 0.06	b : 0.06	i : 0.06	a : 0.05	n : 0.03	r : 0.03	= : 0.03	e : 0.01	g : 0.01	m : 0.01	
c : 0.44	b : 0.11	d : 0.09	i : 0.08	f : 0.06	o : 0.03	4 : 0.03	= : 0.03	e : 0.01	g : 0.01	r : 0.01	m : 0.01	] : 0.01	
c : 0.44	d : 0.09	] : 0.08	i : 0.08	f : 0.06	b : 0.05	e : 0.03	4 : 0.03	= : 0.03	o : 0.01	g : 0.01	r : 0.01	a : 0.01	
2 : 0.18	4 : 0.15	d : 0.13	] : 0.11	c : 0.08	f : 0.08	i : 0.08	= : 0.05	a : 0.03	e : 0.03	3 : 0.01	g : 0.01	b : 0.01	
2 : 0.21	] : 0.16	4 : 0.15	i : 0.08	c : 0.06	f : 0.06	d : 0.06	g : 0.05	= : 0.05	e : 0.03	3 : 0.01	b : 0.01	a : 0.01	
d : 0.15	4 : 0.13	i : 0.13	b : 0.11	c : 0.08	= : 0.08	f : 0.06	e : 0.06	] : 0.05	g : 0.05	2 : 0.03	3 : 0.01	a : 0.01	
b : 0.15	4 : 0.15	d : 0.15	i : 0.13	g : 0.08	= : 0.08	e : 0.06	c : 0.05	f : 0.05	] : 0.03	a : 0.01	2 : 0.01	3 : 0.01	
d : 0.15	i : 0.13	g : 0.11	= : 0.09	e : 0.09	c : 0.08	] : 0.08	f : 0.08	3 : 0.05	b : 0.03	4 : 0.03	2 : 0.01	> : 0.01	
i : 0.16	d : 0.15	g : 0.13	= : 0.09	e : 0.09	f : 0.08	] : 0.06	c : 0.05	3 : 0.05	4 : 0.03	a : 0.01	h : 0.01	> : 0.01	b : 0.01	
g : 0.16	i : 0.13	= : 0.11	] : 0.08	d : 0.08	e : 0.08	c : 0.06	f : 0.06	4 : 0.05	3 : 0.03	a : 0.03	2 : 0.03	h : 0.01	> : 0.01	b : 0.01	
g : 0.19	i : 0.13	= : 0.11	d : 0.11	] : 0.08	f : 0.06	e : 0.06	c : 0.03	3 : 0.03	2 : 0.03	4 : 0.03	a : 0.03	b : 0.01	h : 0.01	> : 0.01	
g : 0.18	i : 0.13	d : 0.09	= : 0.08	e : 0.06	2 : 0.06	c : 0.05	a : 0.05	b : 0.05	3 : 0.05	f : 0.05	] : 0.05	4 : 0.03	h : 0.01	> : 0.01	
g : 0.19	i : 0.13	c : 0.08	= : 0.08	] : 0.08	3 : 0.08	2 : 0.08	d : 0.06	4 : 0.05	b : 0.05	f : 0.03	h : 0.01	> : 0.01	e : 0.01	
g : 0.16	c : 0.13	i : 0.13	= : 0.08	d : 0.08	] : 0.06	3 : 0.06	2 : 0.05	e : 0.05	f : 0.05	a : 0.05	4 : 0.01	h : 0.01	b : 0.01	> : 0.01	
c : 0.15	g : 0.11	] : 0.11	d : 0.09	i : 0.08	= : 0.06	b : 0.06	3 : 0.06	e : 0.06	f : 0.05	4 : 0.03	2 : 0.03	> : 0.03	h : 0.01	
d : 0.15	c : 0.11	g : 0.09	i : 0.09	b : 0.09	e : 0.09	= : 0.08	] : 0.05	f : 0.05	4 : 0.03	3 : 0.03	a : 0.03	> : 0.03	h : 0.01	
d : 0.16	i : 0.09	e : 0.09	] : 0.08	c : 0.08	= : 0.06	g : 0.06	f : 0.06	2 : 0.05	b : 0.05	3 : 0.05	4 : 0.03	a : 0.03	> : 0.03	C : 0.01	
d : 0.13	2 : 0.09	c : 0.09	e : 0.09	f : 0.09	] : 0.08	g : 0.05	i : 0.05	3 : 0.05	a : 0.03	b : 0.03	4 : 0.03	> : 0.03	= : 0.03	h : 0.01	m : 0.01	B : 0.01	C : 0.01	

#score	788.4791582873066
#seq	60
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_UTR_m3_run2.txt

#BEAR
&&&&&&cccqqqqqqqqccc22dddd]	chr17:79525012-79525262(-)$1	250	181	208	9.3299
""ccc[cccqqqqqqqqccc333ccc]	chr16:70514518-70514724(-)$1	206	58	85	13.9260
::ccc[cccqqqqqqqqccc333cccf	chr16:70514461-70514718(-)$1	257	52	79	11.4476
ggggg[cccqqqqqqqqccc]gggggg	chr1:27272637-27272957(+)$1	320	127	154	12.6080
eggggggg[bboooooobb22gggggg	chr5:64018231-64018453(-)$1	222	94	121	6.4730
""bbffffffssssssssssffffff]	chr11:77780878-77781164(-)$1	286	167	194	9.6134
d[ccc####bboooooobb4444cccd	chr11:86048369-86048676(+)$1	307	100	127	6.7285
gggggggbbqqqqqqqqbb]ggggggg	chr22:19711290-19711563(+)$1	273	17	44	11.5625
dd[a[ddddqqqqqqqqdddd]adddd	chrX:153662613-153662886(+)$1	273	109	136	10.9219
eggggggg[bboooooobb22gggggg	chr5:64018253-64018463(-)$1	210	104	131	6.4730
###ffffffqqqqqqqqffffff5555	chr6:33377416-33377725(+)$1	309	209	236	9.3605
ccc[eeeeeqqqqqqqqeeeeecccgg	chr2:99216169-99216428(-)$1	259	4	31	11.2266
dd[ffffffqqqqqqqqffffff]ddd	chr6:32942369-32942572(+)$1	203	105	132	11.8813
dd[ffffffqqqqqqqqffffff]ddd	chr6:32942372-32942577(+)$1	205	102	129	11.8813
bb[ffffffqqqqqqqqffffffbbbb	chr6:32942405-32942611(+)$1	206	131	158	10.5676
eeeecccssssssssssccc]eeeee]	chr6:4115939-4116194(-)$1	255	64	91	11.4052
gggg[ddddqqqqqqqqddddgggggg	chr11:75111703-75111906(+)$1	203	6	33	11.2622
ddd[ccctttttttttttccc]dddd]	chr19:41119452-41119735(+)$1	283	147	174	8.5068
[dddd!!bbqqqqqqqqbb22dddd]d	chr7:5270938-5271220(+)$1	282	188	215	10.5500
[ffffffssssssssssffffffcccc	chr9:19378796-19379003(-)$1	207	110	137	11.7096
eeee"""bbqqqqqqqqbb333eeeee	chr4:84406127-84406345(-)$1	218	61	88	11.3155
Cccc[ddddqqqqqqqqdddd]cccdd	chr17:8172764-8173017(+)$1	253	55	82	10.2805
""ccc[bbqqqqqqqqbbccc333===	chr1:47130827-47131030(-)$1	203	17	44	11.3594
[ffffffssssssssssffffffdddd	chr9:19378759-19378966(-)$1	207	73	100	11.4094
###ffffffpppppppffffff333ee	chrX:62567519-62567761(-)$1	242	101	128	7.9434
hhhh[ddddrrrrrrrrrdddd]hhhh	chr13:100215258-100215540(+)$1	282	180	207	7.2007
""eeeeesssssssssseeeee22fff	chr4:84393290-84393535(-)$1	245	36	63	10.6206
[bb!!ddddssssssssssdddd]bb]	chr2:207024460-207024682(+)$1	222	75	102	9.7924
""ccc[ddddpppppppdddd333ccc	chr11:75111706-75111930(+)$1	224	108	135	7.8175
####eeeeeqqqqqqqqeeeee4444e	chr15:28508036-28508317(-)$1	281	202	229	11.5677
ccc[eeeeerrrrrrrrreeeeeccci	chr22:22221752-22221964(-)$1	212	58	85	8.8827
:::ffffffqqqqqqqqffffffffff	chr11:618790-619008(-)$1	218	12	39	9.1953
"a[bb[ddddqqqqqqqqddddbba22	chr17:7127538-7127784(+)$1	246	195	222	8.9236
eeeecccssssssssssccc]eeeee]	chr6:4116015-4116258(-)$1	243	128	155	11.4052
eeeee[cccssssssssssccc]eeee	chr19:47724375-47724622(-)$1	247	176	203	10.7665
[ffffffssssssssssffffffcccc	chr9:19378810-19379016(-)$1	206	123	150	11.7096
!!ccc!!bbpppppppbb4444ccc22	chr11:618786-618990(-)$1	204	51	78	7.3954
eeeecccssssssssssccc]eeeee]	chr6:4115994-4116215(-)$1	221	85	112	11.4052
"""ffffffssssssssssffffff]e	chr1:53704023-53704272(-)$1	249	155	182	11.6472
&&&&&&cccqqqqqqqqccc22dddd]	chr17:79524988-79525212(-)$1	224	131	158	9.3299

#otherMatches

#Seq PSSM
UUCUUUGCCUUAAUGAUGGCCACAUCU	chr17:79525012-79525262(-)$1	250	181	208	9.3299
ACGGCAGGCAGCGAGCAGCCCAGGCCA	chr16:70514518-70514724(-)$1	206	58	85	13.9260
ACGGCAGGCAGCGAGCAGCCCAGGCCA	chr16:70514461-70514718(-)$1	257	52	79	11.4476
UUGGGGCAGGCAUGGGACUGGCCCAGG	chr1:27272637-27272957(+)$1	320	127	154	12.6080
UGCAGUGGUGUuucuuuacucccacug	chr5:64018231-64018453(-)$1	222	94	121	6.4730
CUGCUGUUUCUGAAUUUGAUGGAACAU	chr11:77780878-77781164(-)$1	286	167	194	9.6134
AUCUGUUGCUCAGAUUGGAAUUUCAGU	chr11:86048369-86048676(+)$1	307	100	127	6.7285
UCUGGGUACUCAGAGAUGUCGCCCAGG	chr22:19711290-19711563(+)$1	273	17	44	11.5625
UGACUCCCCUCACCUUUGGGGUGCAGG	chrX:153662613-153662886(+)$1	273	109	136	10.9219
UGCAGUGGUGUuucuuuacucccacug	chr5:64018253-64018463(-)$1	210	104	131	6.4730
AUAGUUUGGUUUUUUUUUUAAAUAAAG	chr6:33377416-33377725(+)$1	309	209	236	9.3605
ccagucccuguggaagaggggaugggg	chr2:99216169-99216428(-)$1	259	4	31	11.2266
CUCUGUGGAAACAUCAGUUCGCAUGGC	chr6:32942369-32942572(+)$1	203	105	132	11.8813
CUCUGUGGAAACAUCAGUUCGCAUGGC	chr6:32942372-32942577(+)$1	205	102	129	11.8813
CUACCGGUGAGUAGAGACAUUGGAGCC	chr6:32942405-32942611(+)$1	206	131	158	10.5676
UAUCCAGAAAAUCAAAACUGUGAUGAC	chr6:4115939-4116194(-)$1	255	64	91	11.4052
AUUUUGAACUUUGCUUUGUUUGGAUUA	chr11:75111703-75111906(+)$1	203	6	33	11.2622
GGCGUGGAGAUGAAAGGGCCGAGUCUG	chr19:41119452-41119735(+)$1	283	147	174	8.5068
UUUUGUUAAUUAAAUUCUUUCCAAAUU	chr7:5270938-5271220(+)$1	282	188	215	10.5500
UGGGAACGACAAACAAGGUUUCCCCAU	chr9:19378796-19379003(-)$1	207	110	137	11.7096
GGGUCUUGCCUCCGCGCGCCCCGCCCU	chr4:84406127-84406345(-)$1	218	61	88	11.3155
AUGUGGUUCAGAGAAAAGAGCGACAAG	chr17:8172764-8173017(+)$1	253	55	82	10.2805
CCCGCCUGGAGAAACGCAGUGAAUUUC	chr1:47130827-47131030(-)$1	203	17	44	11.3594
UGGGAACGACAAACAAGGUUUCCCCAU	chr9:19378759-19378966(-)$1	207	73	100	11.4094
cuuguauuucuggaacaaauacuacuu	chrX:62567519-62567761(-)$1	242	101	128	7.9434
AUGGUAAUUUUGAAGGAUGAUUCCUAU	chr13:100215258-100215540(+)$1	282	180	207	7.2007
aauaaaauuacuuauauuuuuaGCGUA	chr4:84393290-84393535(-)$1	245	36	63	10.6206
ACUUUGACCUUUAACCUUCGGUCCGGC	chr2:207024460-207024682(+)$1	222	75	102	9.7924
AGUUGAGGUGCGAGUUACACCAACCAG	chr11:75111706-75111930(+)$1	224	108	135	7.8175
CAUGGAACAGAGGAACAUGUUCGUUAU	chr15:28508036-28508317(-)$1	281	202	229	11.5677
GAGUGGCUGUCGGCUCUUCAGCUCUCC	chr22:22221752-22221964(-)$1	212	58	85	8.8827
CCCGGGUGCAGAAAACAGCACCUCCCA	chr11:618790-619008(-)$1	218	12	39	9.1953
AGAGCCUGCAUCAGGGACUGCAGCCGA	chr17:7127538-7127784(+)$1	246	195	222	8.9236
UAUCCAGAAAAUCAAAACUGUGAUGAC	chr6:4116015-4116258(-)$1	243	128	155	11.4052
GGGGCCCAGACUGUGAAUCCUGUGCUC	chr19:47724375-47724622(-)$1	247	176	203	10.7665
UGGGAACGACAAACAAGGUUUCCCCAU	chr9:19378810-19379016(-)$1	206	123	150	11.7096
ACAGACCCCAAAGCCAGGAACCUCUCA	chr11:618786-618990(-)$1	204	51	78	7.3954
UAUCCAGAAAAUCAAAACUGUGAUGAC	chr6:4115994-4116215(-)$1	221	85	112	11.4052
GAGAGUGACUUUUAUCUGCGUUACUAC	chr1:53704023-53704272(-)$1	249	155	182	11.6472
UUCUUUGCCUUAAUGAUGGCCACAUCU	chr17:79524988-79525212(-)$1	224	131	158	9.3299

#DB
......(((........)))..)))).	chr17:79525012-79525262(-)$1	1	181	208	9.3299
..(((.(((........)))...))).	chr16:70514518-70514724(-)$1	1	58	85	13.9260
..(((.(((........)))...)))(	chr16:70514461-70514718(-)$1	1	52	79	11.4476
(((((.(((........))).))))))	chr1:27272637-27272957(+)$1	1	127	154	12.6080
((((((((.((......))..))))))	chr5:64018231-64018453(-)$1	1	94	121	6.4730
..((((((((..........)))))).	chr11:77780878-77781164(-)$1	1	167	194	9.6134
(.(((....((......))....))))	chr11:86048369-86048676(+)$1	1	100	127	6.7285
(((((((((........)).)))))))	chr22:19711290-19711563(+)$1	1	17	44	11.5625
((.(.((((........)))).)))))	chrX:153662613-153662886(+)$1	1	109	136	10.9219
((((((((.((......))..))))))	chr5:64018253-64018463(-)$1	1	104	131	6.4730
...((((((........))))))....	chr6:33377416-33377725(+)$1	1	209	236	9.3605
(((.(((((........))))))))((	chr2:99216169-99216428(-)$1	1	4	31	11.2266
((.((((((........)))))).)))	chr6:32942369-32942572(+)$1	1	105	132	11.8813
((.((((((........)))))).)))	chr6:32942372-32942577(+)$1	1	102	129	11.8813
((.((((((........))))))))))	chr6:32942405-32942611(+)$1	1	131	158	10.5676
(((((((..........))).))))).	chr6:4115939-4116194(-)$1	1	64	91	11.4052
((((.((((........))))))))))	chr11:75111703-75111906(+)$1	1	6	33	11.2622
(((.(((...........))).)))).	chr19:41119452-41119735(+)$1	1	147	174	8.5068
.((((..((........))..)))).)	chr7:5270938-5271220(+)$1	1	188	215	10.5500
.((((((..........))))))))))	chr9:19378796-19379003(-)$1	1	110	137	11.7096
((((...((........))...)))))	chr4:84406127-84406345(-)$1	1	61	88	11.3155
((((.((((........)))).)))((	chr17:8172764-8173017(+)$1	1	55	82	10.2805
..(((.((........)))))...)))	chr1:47130827-47131030(-)$1	1	17	44	11.3594
.((((((..........))))))))))	chr9:19378759-19378966(-)$1	1	73	100	11.4094
...((((((.......))))))...))	chrX:62567519-62567761(-)$1	1	101	128	7.9434
((((.((((.........)))).))))	chr13:100215258-100215540(+)$1	1	180	207	7.2007
..(((((..........)))))..)))	chr4:84393290-84393535(-)$1	1	36	63	10.6206
.((..((((..........)))).)).	chr2:207024460-207024682(+)$1	1	75	102	9.7924
..(((.((((.......))))...)))	chr11:75111706-75111930(+)$1	1	108	135	7.8175
....(((((........)))))....)	chr15:28508036-28508317(-)$1	1	202	229	11.5677
(((.(((((.........))))))))(	chr22:22221752-22221964(-)$1	1	58	85	8.8827
...((((((........))))))((((	chr11:618790-619008(-)$1	1	12	39	9.1953
.(.((.((((........)))))))..	chr17:7127538-7127784(+)$1	1	195	222	8.9236
(((((((..........))).))))).	chr6:4116015-4116258(-)$1	1	128	155	11.4052
(((((.(((..........))).))))	chr19:47724375-47724622(-)$1	1	176	203	10.7665
.((((((..........))))))))))	chr9:19378810-19379016(-)$1	1	123	150	11.7096
..(((..((.......))....)))..	chr11:618786-618990(-)$1	1	51	78	7.3954
(((((((..........))).))))).	chr6:4115994-4116215(-)$1	1	85	112	11.4052
...((((((..........)))))).)	chr1:53704023-53704272(-)$1	1	155	182	11.6472
......(((........)))..)))).	chr17:79524988-79525212(-)$1	1	131	158	9.3299

#PSSM
" : 0.17	e : 0.17	d : 0.12	[ : 0.12	g : 0.07	# : 0.07	& : 0.05	: : 0.05	c : 0.05	b : 0.02	C : 0.02	h : 0.02	! : 0.02	
" : 0.15	g : 0.12	d : 0.12	e : 0.12	# : 0.07	c : 0.07	f : 0.07	& : 0.05	: : 0.05	b : 0.05	[ : 0.02	h : 0.02	a : 0.02	! : 0.02	
c : 0.22	e : 0.15	g : 0.12	[ : 0.12	# : 0.07	f : 0.07	& : 0.05	b : 0.05	d : 0.05	h : 0.02	: : 0.02	" : 0.02	
f : 0.24	c : 0.17	e : 0.15	g : 0.12	[ : 0.07	& : 0.05	b : 0.05	a : 0.02	d : 0.02	h : 0.02	! : 0.02	# : 0.02	
f : 0.27	c : 0.24	e : 0.12	g : 0.10	[ : 0.10	& : 0.05	d : 0.02	" : 0.02	! : 0.02	b : 0.02	
f : 0.27	[ : 0.17	d : 0.12	e : 0.10	c : 0.10	g : 0.07	& : 0.05	! : 0.05	# : 0.02	" : 0.02	
f : 0.27	c : 0.24	d : 0.17	e : 0.10	g : 0.07	! : 0.05	# : 0.02	" : 0.02	b : 0.02	
f : 0.19	d : 0.17	s : 0.17	c : 0.15	b : 0.12	e : 0.07	g : 0.05	# : 0.02	t : 0.02	
f : 0.19	d : 0.17	s : 0.17	c : 0.15	b : 0.10	e : 0.07	[ : 0.05	# : 0.02	t : 0.02	q : 0.02	
q : 0.47	s : 0.24	b : 0.07	p : 0.05	r : 0.05	d : 0.05	f : 0.02	t : 0.02	
q : 0.50	s : 0.27	b : 0.07	p : 0.07	r : 0.05	t : 0.02	
q : 0.50	s : 0.27	o : 0.07	p : 0.07	r : 0.05	t : 0.02	
q : 0.50	s : 0.27	o : 0.07	p : 0.07	r : 0.05	t : 0.02	
q : 0.50	s : 0.27	o : 0.07	p : 0.07	r : 0.05	t : 0.02	
q : 0.50	s : 0.27	o : 0.07	p : 0.07	r : 0.05	t : 0.02	
q : 0.50	s : 0.27	o : 0.07	p : 0.07	r : 0.05	t : 0.02	
q : 0.47	s : 0.27	o : 0.07	b : 0.05	r : 0.05	t : 0.02	f : 0.02	p : 0.02	
f : 0.22	c : 0.19	b : 0.19	s : 0.10	d : 0.10	e : 0.07	r : 0.05	t : 0.02	q : 0.02	
c : 0.24	f : 0.22	b : 0.15	d : 0.15	s : 0.10	e : 0.10	4 : 0.02	
c : 0.27	f : 0.24	d : 0.17	e : 0.10	2 : 0.07	4 : 0.05	s : 0.02	] : 0.02	3 : 0.02	
f : 0.27	d : 0.17	2 : 0.12	] : 0.10	e : 0.10	3 : 0.07	c : 0.07	4 : 0.05	g : 0.02	
f : 0.27	e : 0.17	3 : 0.12	g : 0.12	d : 0.10	] : 0.07	2 : 0.05	4 : 0.05	c : 0.02	
f : 0.24	d : 0.12	3 : 0.12	g : 0.12	e : 0.12	c : 0.07	4 : 0.05	] : 0.05	a : 0.02	2 : 0.02	b : 0.02	
c : 0.22	d : 0.15	g : 0.12	e : 0.12	f : 0.07	] : 0.07	3 : 0.07	b : 0.05	5 : 0.02	h : 0.02	2 : 0.02	4 : 0.02	
c : 0.24	d : 0.19	g : 0.12	e : 0.12	f : 0.10	b : 0.05	5 : 0.02	= : 0.02	3 : 0.02	h : 0.02	4 : 0.02	a : 0.02	
d : 0.19	c : 0.17	g : 0.15	e : 0.15	f : 0.07	b : 0.05	] : 0.05	2 : 0.05	5 : 0.02	= : 0.02	h : 0.02	4 : 0.02	
] : 0.22	d : 0.17	g : 0.15	e : 0.12	f : 0.07	c : 0.07	2 : 0.05	5 : 0.02	b : 0.02	= : 0.02	h : 0.02	i : 0.02	

#score	407.4044675626451
#seq	40
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_transcript_m2_run2.txt

#BEAR
hhhhhhhvvvvvvvvvvvvvhhhh	chr17:7482228-7482544(+)$1	316	48	72	21.8292
dddd[bbtttttttttttbb]ddd	chr3:111499321-111499594(+)$1	273	104	128	21.5113
dd!!ccctttttttttttccc]dd	chr2:63098342-63098623(+)$1	281	119	143	22.8999
ddd[ccctttttttttttccc]dd	chr3:45722657-45722926(+)$1	269	105	129	22.6423
d!!ddddtttttttttttdddddd	chr2:188397317-188397573(+)$1	256	62	86	22.5110
deeeeevvvvvvvvvvvvveeeee	chr4:760910-761161(-)$1	251	209	233	22.7831
hhhhhhhvvvvvvvvvvvvvhhhh	chr16:21994577-21994833(+)$1	256	153	177	21.8292
ggggggwwwwwwwwwwwwwwgggg	chr7:34697283-34697559(-)$1	276	4	28	21.8356
eeeewwwwwwwwwwwwwweeeee]	chr16:16243267-16243482(-)$1	215	145	169	20.1480
!ffffffuuuuuuuuuuuufffff	chr4:73977353-73977622(-)$1	269	216	240	21.9341
:eeeeevvvvvvvvvvvvveeeee	chr8:17760090-17760349(-)$1	259	166	190	21.9875
hhhhhhuuuuuuuuuuuuhhhhhh	chr7:104650784-104651064(-)$1	280	166	190	21.7604
ggggggwwwwwwwwwwwwwwgggg	chr7:34697359-34697651(-)$1	292	96	120	21.8356
hh[dddduuuuuuuuuuuudddd]	chr6:47946365-47946617(-)$1	252	143	167	22.7569
c[eeeeevvvvvvvvvvvvveeee	chr5:64051788-64052053(-)$1	265	83	107	22.4898
e!!eeeeesssssssssseeeee3	chr5:139494960-139495238(+)$1	278	50	74	15.4837
ggggggguuuuuuuuuuuuggggg	chr6:108532538-108532810(-)$1	272	0	24	23.3730
bb[dddduuuuuuuuuuuudddd]	chr2:178094566-178094884(-)$1	318	200	224	22.4518
e[cccbbuuuuuuuuuuuubb333	chr12:11189392-11189718(-)$1	326	131	155	21.7382
fffffwwwwwwwwwwwwwwfffff	chr1:6963387-6963675(+)$1	288	89	113	20.2145
cc[eeeeesssssssssseeeee]	chr2:55462649-55462903(+)$1	254	203	227	15.6374
ffffccctttttttttttcccGGG	chr6:158365443-158365753(+)$1	310	173	197	20.8187
bb[bb[attttttttttta]bb]b	chr3:171506135-171506457(-)$1	322	211	235	21.8139
iiiiiiiuuuuuuuuuuuuiiiii	chr19:18864028-18864360(+)$1	332	121	145	23.3431
:eeeeeuuuuuuuuuuuueeeeef	chrX:108971057-108971286(-)$1	229	3	27	21.5124
###dddduuuuuuuuuuuudddd6	chr1:6516629-6516911(+)$1	282	158	182	21.7476
bbeeeeettttttttttteeeee]	chr21:18942322-18942581(+)$1	259	180	204	22.7373
:fffffftttttttttttffffff	chr20:47760176-47760404(-)$1	228	127	151	20.9177
d[ddddvvvvvvvvvvvvvdddd]	chr8:38177037-38177367(-)$1	330	137	161	22.6226
cc!!ccctttttttttttccc22c	chr17:26988771-26989098(-)$1	327	127	151	22.7476
::eeeeettttttttttteeeee:	chr11:77780714-77780990(-)$1	276	156	180	20.0894
ggggggvvvvvvvvvvvvvggggg	chr18:60253868-60254163(+)$1	295	135	159	23.3798
iiiiiiitttttttttttiiiiii	chr13:113362554-113362786(+)$1	232	181	205	23.1797
hhhhhhhttttttttttthhhhhh	chr8:121733648-121733920(-)$1	272	67	91	22.1316
""bb[bbtttttttttttbb]bb3	chr3:127996215-127996498(+)$1	283	58	82	20.7225
dd[ddddtttttttttttdddd]d	chr3:8918706-8918969(-)$1	263	79	103	22.3617
hh!!cccuuuuuuuuuuuuccc]h	chr22:35738397-35738667(+)$1	270	170	194	23.0547
ggggggguuuuuuuuuuuuggggg	chr7:155570429-155570707(+)$1	278	89	113	23.3730
!!ccc[attttttttttta]ccci	chr19:5893754-5894043(-)$1	289	13	37	23.6028
ddbb[auuuuuuuuuuuua]bb]d	chr15:29992158-29992454(-)$1	296	190	214	21.2668
Ieeeeevvvvvvvvvvvvveeeee	chr10:114332631-114332900(+)$1	269	10	34	21.6729
hhhhhhhttttttttttthhhhhh	chr11:68095752-68096034(+)$1	282	16	40	22.1316
&dddd[auuuuuuuuuuuua]ddd	chr14:88517550-88517809(+)$1	259	194	218	21.8943
hhhhhhhttttttttttthhhhhh	chr20:57258517-57258796(+)$1	279	219	243	22.1316
gggggggtttttttttttgggggg	chr2:136685447-136685734(-)$1	287	24	48	23.2954
fffff[attttttttttta]ffff	chr3:9452966-9453219(+)$1	253	32	56	22.5526
hhhhhhuuuuuuuuuuuuhhhhhh	chr11:95993580-95993871(-)$1	291	13	37	21.7604
[ffffffuuuuuuuuuuuufffff	chr17:53371805-53372069(+)$1	264	177	201	21.9072
eeeeevvvvvvvvvvvvveeeeec	chr20:31051962-31052218(-)$1	256	146	170	21.7699
c[ddddvvvvvvvvvvvvvddddc	chr18:33646231-33646527(-)$1	296	2	26	22.5873
b::dddduuuuuuuuuuuudddd:	chr7:29145064-29145353(-)$1	289	206	230	19.2831

#otherMatches

#Seq PSSM
UUCAGGAAACAAACACAAAAUUCU	chr17:7482228-7482544(+)$1	316	48	72	21.8292
cugugguauuccauuauagcgaca	chr3:111499321-111499594(+)$1	273	104	128	21.5113
GCCAUUCUUUUUCCACAUGAAAGU	chr2:63098342-63098623(+)$1	281	119	143	22.8999
UGGGUCUUUUCUGUGUGUGGAGUC	chr3:45722657-45722926(+)$1	269	105	129	22.6423
ccuuugggcagucaccuaccaagc	chr2:188397317-188397573(+)$1	256	62	86	22.5110
AGCUGCUCACCCUGUCCCUGCAGC	chr4:760910-761161(-)$1	251	209	233	22.7831
UUGUUUUAGAUGCUUUAAAGGAGA	chr16:21994577-21994833(+)$1	256	153	177	21.8292
gagguugcuuuCUGACUUAAAGCC	chr7:34697283-34697559(-)$1	276	4	28	21.8356
ggaauagccaccaccaUUUUCCGA	chr16:16243267-16243482(-)$1	215	145	169	20.1480
AGAAUAGUCCAUAAUAaguuuguu	chr4:73977353-73977622(-)$1	269	216	240	21.9341
UCUACUUUUCAACUUUCUUGGUAG	chr8:17760090-17760349(-)$1	259	166	190	21.9875
GUGUGUUAAAAUUAAAAUGCACAC	chr7:104650784-104651064(-)$1	280	166	190	21.7604
gagguugcuuuCUGACUUAAAGCC	chr7:34697359-34697651(-)$1	292	96	120	21.8356
caaguuacuuaacuuuuauugacc	chr6:47946365-47946617(-)$1	252	143	167	22.7569
AAAUCAGUUUUAAUUUGUCUCUGG	chr5:64051788-64052053(-)$1	265	83	107	22.4898
AAUAACAUUAUAUGAACUGUGUUU	chr5:139494960-139495238(+)$1	278	50	74	15.4837
GUAUAAAAACAAAAGCAAAUUUAU	chr6:108532538-108532810(-)$1	272	0	24	23.3730
aggggagguaacaaGCAUACUCCA	chr2:178094566-178094884(-)$1	318	200	224	22.4518
UAAUGCUGAGAAUCAUAGAAGAAU	chr12:11189392-11189718(-)$1	326	131	155	21.7382
AAAACCCACUUUUACAGCUGUUUU	chr1:6963387-6963675(+)$1	288	89	113	20.2145
CCUCUGGGGAUUAUGUGACCCAGU	chr2:55462649-55462903(+)$1	254	203	227	15.6374
UAUUCCAGCUGCUGAAAAUGGUCC	chr6:158365443-158365753(+)$1	310	173	197	20.8187
GGUAUACGAGUAAUCCAGGAAUCC	chr3:171506135-171506457(-)$1	322	211	235	21.8139
UUUGUGGUUUUAGUACAGUCCACA	chr19:18864028-18864360(+)$1	332	121	145	23.3431
AGGCAGUACUGAAAUUAUUUGUCC	chrX:108971057-108971286(-)$1	229	3	27	21.5124
GUGCCCGUAUCCACUCUAUUGGGA	chr1:6516629-6516911(+)$1	282	158	182	21.7476
GUCAUGGUUUCCUUCCCCCCGUGU	chr21:18942322-18942581(+)$1	259	180	204	22.7373
uuauuuguaaaaugacuuuagaua	chr20:47760176-47760404(-)$1	228	127	151	20.9177
UAUUUCACCACAUCUUAAAGAAAC	chr8:38177037-38177367(-)$1	330	137	161	22.6226
GGUUUCGCCAUUAGCUUCCGGUUC	chr17:26988771-26989098(-)$1	327	127	151	22.7476
CCCAUCUGAAAGAUUUUAAGAUGA	chr11:77780714-77780990(-)$1	276	156	180	20.0894
ucccagcaaaguggaauaacuggg	chr18:60253868-60254163(+)$1	295	135	159	23.3798
UAAAAUGGAGUAAUUAUAUAUUUU	chr13:113362554-113362786(+)$1	232	181	205	23.1797
AUUUAUAUGAAUUUAUUUUGUAAG	chr8:121733648-121733920(-)$1	272	67	91	22.1316
UCCAGCCUUUCAAAGUUUGGGUGU	chr3:127996215-127996498(+)$1	283	58	82	20.7225
auugucuauaaguuacccagacug	chr3:8918706-8918969(-)$1	263	79	103	22.3617
GAGAAGCUUUGUUUAGUUUGCUGU	chr22:35738397-35738667(+)$1	270	170	194	23.0547
AAUACAUUUAUCCUGAUCUGUGUA	chr7:155570429-155570707(+)$1	278	89	113	23.3730
AACUGGCUCAUGCUCCCUGGCAGC	chr19:5893754-5894043(-)$1	289	13	37	23.6028
AGCGUCACCUACCACCUCGUCGUC	chr15:29992158-29992454(-)$1	296	190	214	21.2668
AACCAUGAACUGUAUUUUAAUGGU	chr10:114332631-114332900(+)$1	269	10	34	21.6729
UGAUAAAUUUGGCAUGUCUUUAUU	chr11:68095752-68096034(+)$1	282	16	40	22.1316
uuguuucacauuucugccagcaac	chr14:88517550-88517809(+)$1	259	194	218	21.8943
gucaggagaucgagaccauccugg	chr20:57258517-57258796(+)$1	279	219	243	22.1316
UACAACAUGGAAGUAAUUUGUUGU	chr2:136685447-136685734(-)$1	287	24	48	23.2954
AACUUUGUCAUUUAAAAUCCAAGU	chr3:9452966-9453219(+)$1	253	32	56	22.5526
UCAUUAUGGGUAUUAGUUUAGUGA	chr11:95993580-95993871(-)$1	291	13	37	21.7604
GUGGGGAUGUGGCCUCUUUUCCCC	chr17:53371805-53372069(+)$1	264	177	201	21.9072
GGUGCUCCUUGGAACUACGCAUCG	chr20:31051962-31052218(-)$1	256	146	170	21.7699
UGUCUGUCACUAAAAUAUUCAGAA	chr18:33646231-33646527(-)$1	296	2	26	22.5873
GAACGAGUAAUAGAAAAGCCUCGG	chr7:29145064-29145353(-)$1	289	206	230	19.2831

#DB
(((((((.............))))	chr17:7482228-7482544(+)$1	1	48	72	21.8292
((((.((...........)).)))	chr3:111499321-111499594(+)$1	1	104	128	21.5113
((..(((...........))).))	chr2:63098342-63098623(+)$1	1	119	143	22.8999
(((.(((...........))).))	chr3:45722657-45722926(+)$1	1	105	129	22.6423
(..((((...........))))))	chr2:188397317-188397573(+)$1	1	62	86	22.5110
((((((.............)))))	chr4:760910-761161(-)$1	1	209	233	22.7831
(((((((.............))))	chr16:21994577-21994833(+)$1	1	153	177	21.8292
((((((..............))))	chr7:34697283-34697559(-)$1	1	4	28	21.8356
((((..............))))).	chr16:16243267-16243482(-)$1	1	145	169	20.1480
.((((((............)))))	chr4:73977353-73977622(-)$1	1	216	240	21.9341
.(((((.............)))))	chr8:17760090-17760349(-)$1	1	166	190	21.9875
((((((............))))))	chr7:104650784-104651064(-)$1	1	166	190	21.7604
((((((..............))))	chr7:34697359-34697651(-)$1	1	96	120	21.8356
((.((((............)))).	chr6:47946365-47946617(-)$1	1	143	167	22.7569
(.(((((.............))))	chr5:64051788-64052053(-)$1	1	83	107	22.4898
(..(((((..........))))).	chr5:139494960-139495238(+)$1	1	50	74	15.4837
(((((((............)))))	chr6:108532538-108532810(-)$1	1	0	24	23.3730
((.((((............)))).	chr2:178094566-178094884(-)$1	1	200	224	22.4518
(.(((((............))...	chr12:11189392-11189718(-)$1	1	131	155	21.7382
(((((..............)))))	chr1:6963387-6963675(+)$1	1	89	113	20.2145
((.(((((..........))))).	chr2:55462649-55462903(+)$1	1	203	227	15.6374
))))(((...........)))(((	chr6:158365443-158365753(+)$1	1	173	197	20.8187
((.((.(...........).)).)	chr3:171506135-171506457(-)$1	1	211	235	21.8139
(((((((............)))))	chr19:18864028-18864360(+)$1	1	121	145	23.3431
.(((((............)))))(	chrX:108971057-108971286(-)$1	1	3	27	21.5124
...((((............)))).	chr1:6516629-6516911(+)$1	1	158	182	21.7476
(((((((...........))))).	chr21:18942322-18942581(+)$1	1	180	204	22.7373
.((((((...........))))))	chr20:47760176-47760404(-)$1	1	127	151	20.9177
(.((((.............)))).	chr8:38177037-38177367(-)$1	1	137	161	22.6226
((..(((...........)))..)	chr17:26988771-26989098(-)$1	1	127	151	22.7476
..(((((...........))))).	chr11:77780714-77780990(-)$1	1	156	180	20.0894
((((((.............)))))	chr18:60253868-60254163(+)$1	1	135	159	23.3798
(((((((...........))))))	chr13:113362554-113362786(+)$1	1	181	205	23.1797
(((((((...........))))))	chr8:121733648-121733920(-)$1	1	67	91	22.1316
..((.((...........)).)).	chr3:127996215-127996498(+)$1	1	58	82	20.7225
((.((((...........)))).)	chr3:8918706-8918969(-)$1	1	79	103	22.3617
((..(((............))).)	chr22:35738397-35738667(+)$1	1	170	194	23.0547
(((((((............)))))	chr7:155570429-155570707(+)$1	1	89	113	23.3730
..(((.(...........).))))	chr19:5893754-5894043(-)$1	1	13	37	23.6028
((((.(............).)).)	chr15:29992158-29992454(-)$1	1	190	214	21.2668
((((((.............)))))	chr10:114332631-114332900(+)$1	1	10	34	21.6729
(((((((...........))))))	chr11:68095752-68096034(+)$1	1	16	40	22.1316
.((((.(............).)))	chr14:88517550-88517809(+)$1	1	194	218	21.8943
(((((((...........))))))	chr20:57258517-57258796(+)$1	1	219	243	22.1316
(((((((...........))))))	chr2:136685447-136685734(-)$1	1	24	48	23.2954
(((((.(...........).))))	chr3:9452966-9453219(+)$1	1	32	56	22.5526
((((((............))))))	chr11:95993580-95993871(-)$1	1	13	37	21.7604
.((((((............)))))	chr17:53371805-53372069(+)$1	1	177	201	21.9072
(((((.............)))))(	chr20:31051962-31052218(-)$1	1	146	170	21.7699
(.((((.............)))))	chr18:33646231-33646527(-)$1	1	2	26	22.5873
)..((((............)))).	chr7:29145064-29145353(-)$1	1	206	230	19.2831

#PSSM
h : 0.17	d : 0.15	g : 0.11	e : 0.07	: : 0.07	c : 0.07	b : 0.07	f : 0.05	! : 0.03	i : 0.03	# : 0.01	" : 0.01	I : 0.01	& : 0.01	[ : 0.01	
h : 0.17	d : 0.11	e : 0.11	g : 0.11	f : 0.11	[ : 0.07	! : 0.05	b : 0.05	c : 0.03	i : 0.03	: : 0.03	# : 0.01	" : 0.01	
e : 0.17	h : 0.13	g : 0.11	f : 0.11	d : 0.09	! : 0.09	[ : 0.09	c : 0.03	i : 0.03	b : 0.03	# : 0.01	: : 0.01	
e : 0.21	d : 0.19	h : 0.13	g : 0.11	f : 0.11	! : 0.05	b : 0.05	c : 0.03	i : 0.03	[ : 0.01	
e : 0.19	d : 0.17	h : 0.13	c : 0.13	g : 0.11	f : 0.09	[ : 0.05	i : 0.03	w : 0.01	b : 0.01	
e : 0.17	d : 0.15	h : 0.13	g : 0.11	c : 0.09	[ : 0.07	b : 0.05	f : 0.05	w : 0.03	i : 0.03	a : 0.01	v : 0.01	
v : 0.13	d : 0.11	h : 0.09	c : 0.09	e : 0.09	w : 0.07	u : 0.07	a : 0.07	b : 0.05	f : 0.05	g : 0.05	i : 0.03	
t : 0.37	u : 0.31	v : 0.19	w : 0.07	e : 0.03	
t : 0.37	u : 0.31	v : 0.19	w : 0.07	s : 0.03	
t : 0.37	u : 0.31	v : 0.19	w : 0.07	s : 0.03	
t : 0.37	u : 0.31	v : 0.19	w : 0.07	s : 0.03	
t : 0.37	u : 0.31	v : 0.19	w : 0.07	s : 0.03	
t : 0.37	u : 0.31	v : 0.19	w : 0.07	s : 0.03	
t : 0.37	u : 0.31	v : 0.19	w : 0.07	s : 0.03	
t : 0.37	u : 0.31	v : 0.19	w : 0.07	s : 0.03	
t : 0.37	u : 0.31	v : 0.19	w : 0.07	s : 0.03	
t : 0.37	u : 0.31	v : 0.19	w : 0.07	s : 0.03	
t : 0.37	u : 0.31	v : 0.19	w : 0.07	s : 0.03	
u : 0.23	v : 0.17	e : 0.13	h : 0.09	c : 0.07	a : 0.07	w : 0.05	b : 0.03	d : 0.03	f : 0.01	i : 0.01	g : 0.01	
e : 0.19	d : 0.15	c : 0.09	h : 0.09	f : 0.07	g : 0.07	] : 0.07	v : 0.05	b : 0.05	w : 0.03	i : 0.03	a : 0.01	
e : 0.21	d : 0.15	h : 0.13	c : 0.11	g : 0.11	f : 0.09	] : 0.05	b : 0.05	i : 0.03	
e : 0.21	d : 0.19	h : 0.13	g : 0.11	f : 0.09	b : 0.05	] : 0.03	i : 0.03	c : 0.03	3 : 0.01	G : 0.01	2 : 0.01	
d : 0.21	e : 0.21	h : 0.13	g : 0.11	f : 0.09	] : 0.07	i : 0.03	3 : 0.01	G : 0.01	2 : 0.01	b : 0.01	c : 0.01	
h : 0.15	d : 0.13	g : 0.11	] : 0.11	f : 0.11	e : 0.07	3 : 0.05	i : 0.05	c : 0.05	: : 0.03	G : 0.01	b : 0.01	6 : 0.01	

#score	1112.0639860391295
#seq	51
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_UTR_m2_run2.txt

#BEAR
eee[a[bb[annnnna]bb]aee	chr16:88722384-88722614(-)$1	230	26	49	10.5785
g[hhhhhhhhnnnnnhhhhhhhh	chrX:11776553-11776840(+)$1	287	30	53	10.5127
$$eeeee!!annnnna]eeeee3	chr1:153954337-153954619(-)$1	282	129	152	11.1956
b$$$$$ddddnnnnndddd4444	chr8:101963115-101963410(-)$1	295	172	195	10.2042
======[cccnnnnnccc333==	chr1:1208163-1208424(-)$1	261	121	144	13.7108
"ggggggg[annnnna]gggggg	chr1:155242891-155243133(-)$1	242	146	169	12.5759
[iiiiiiiiillliiiiiiiii]	chr7:44252170-44252483(+)$1	313	235	258	8.5467
==========nnnnn========	chr2:242707466-242707736(+)$1	270	154	177	13.5953
diiiiiiiiinnnnniiiiiiii	chr22:22899769-22899990(-)$1	221	106	129	13.1146
!!ccc[ddddnnnnndddd]ccc	chr16:29821985-29822235(+)$1	250	46	69	11.6813
fffgggggggnnnnnggggggg:	chr3:183353909-183354137(+)$1	228	82	105	11.4446
eeee[eeeeennnnneeeee]ee	chr21:46270353-46270665(-)$1	312	24	47	11.0638
ccc!!eeeeennnnneeeee22c	chr7:100075826-100076057(-)$1	231	159	182	11.1584
ddddffffffnnnnnffffff]d	chr11:61634359-61634646(+)$1	287	11	34	9.9995
fffgggggggnnnnnggggggg5	chr19:1104611-1104910(+)$1	299	148	171	11.6854
a[eeeeecccnnnnnccc22eee	chr19:2426308-2426559(-)$1	251	160	183	11.8722
dddd"""cccnnnnnccc4444d	chr19:50880350-50880629(+)$1	279	174	197	12.0875
!dddd[ddddnnnnndddd]ddd	chr19:1881842-1882094(-)$1	252	122	145	10.9521
fff"""ddddnnnnndddd333f	chr3:179065703-179066008(+)$1	305	224	247	11.4689
gghhhhhhhhnnnnnhhhhhhhh	chr19:1883620-1883878(-)$1	258	219	242	10.4034
d[bb!!ddddnnnnndddd22bb	chr7:5569448-5569689(-)$1	241	38	61	10.3756
[a[ccc!!annnnna22ccc]a]	chr3:195635560-195635882(-)$1	322	189	212	10.0911
dddddddcccnnnnnccc]dddd	chr12:132402869-132403140(+)$1	271	240	263	11.4724
Iiiiiiiiiinnnnniiiiiiii	chr22:24313517-24313830(-)$1	313	70	93	12.0068
========bbnnnnnbb]=====	chr11:64511561-64511862(-)$1	301	192	215	12.6338
bb[dddd[bbnnnnnbb]dddd]	chr17:46131863-46132116(+)$1	253	207	230	10.5282
gg:gggggggnnnnngggggggH	chr22:50013315-50013554(-)$1	239	112	135	10.7849
:ccca!!cccnnnnnccc22a]c	chr21:46644321-46644608(+)$1	287	28	51	11.5947
==========nnnnn========	chr22:39917006-39917282(+)$1	276	248	271	13.5953
f[hhhhhhhhnnnnnhhhhhhhh	chr16:89006207-89006431(-)$1	224	122	145	10.4314
::eeeeecccnnnnnccc]eeee	chr2:191513913-191514165(+)$1	252	36	59	10.1146
#a[ccc!!bbnnnnnbb]ccc]a	chr4:2935988-2936298(-)$1	310	126	149	11.6462
===========lll=========	chr3:49045317-49045611(+)$1	294	88	111	9.1248
ccc"""ddddnnnnndddd]ccc	chr6:30881965-30882258(+)$1	293	179	202	11.5078
a####bbcccnnnnnccc]bb77	chr12:113826936-113827184(+)$1	248	7	30	10.2893
ffffffffffnnnnnffffff>>	chr19:36245871-36246168(+)$1	297	132	155	9.7151
gggggg!!ccclllcccgggggg	chr22:19864236-19864492(-)$1	256	8	31	8.0742
dddd[eeeeennnnneeeeeddd	chr5:179248513-179248779(+)$1	266	22	45	10.7078
cc[bb!!cccnnnnnccc22bb]	chr2:61404991-61405237(+)$1	246	179	202	11.7751
==!!ddddbbnnnnnbb]dddd5	chr9:139560091-139560367(+)$1	276	167	190	10.3073
ddda[eeeeennnnneeeee333	chr22:22899480-22899721(-)$1	241	147	170	11.3199
fff[bb[cccnnnnnccc]bbff	chr11:95522561-95522848(-)$1	287	116	139	11.3277
$eeeee[cccnnnnnccc]eeee	chr16:725959-726250(+)$1	291	94	117	12.0036
ffff[a[cccnnnnnccc]a]ff	chr11:71710046-71710331(+)$1	285	130	153	12.4135
ffff!!ddddnnnnnddddffff	chr15:64752848-64753082(+)$1	234	185	208	10.9138
ffffff[a[annnnna]a]ffff	chr16:67977016-67977320(-)$1	304	61	84	11.1604
cc[gggggggnnnnnggggggg]	chr17:7141273-7141506(-)$1	233	97	120	12.8372
==========lll==========	chr17:62503174-62503459(+)$1	285	127	150	9.1339
bb[ccc[cccnnnnncccccc22	chr4:1019110-1019375(+)$1	265	42	65	12.0101
d::gggggggnnnnnggggggge	chr1:26232505-26232755(-)$1	250	60	83	10.3328
dddd[eeeeennnnneeeee]dd	chr21:46644408-46644668(+)$1	260	37	60	10.9142
e[dddd[cccnnnnncccdddd]	chr19:15442537-15442795(-)$1	258	140	163	12.0594
ee[ccc!!bbnnnnnbbccc]ee	chr7:106809430-106809674(+)$1	244	22	45	11.5498
===ddddcccnnnnnccc]dddd	chr15:89441841-89442125(-)$1	284	36	59	12.0723
c[dddd!!bbnnnnnbb]dddd]	chr2:196522002-196522304(+)$1	302	185	208	11.1242
[iiiiiiiiinnnnniiiiiiii	chr11:404655-404968(+)$1	313	16	39	13.3000

#otherMatches

#Seq PSSM
CGACGGGAAGGACAGCAUCGCUC	chr16:88722384-88722614(-)$1	230	26	49	10.5785
GGGCUCCUCGGCCUGCGAGGAGC	chrX:11776553-11776840(+)$1	287	30	53	10.5127
GGGCUUGGAGGGUCACAUAGGUA	chr1:153954337-153954619(-)$1	282	129	152	11.1956
AGAACAGGGUGGUGAGCCCGCAG	chr8:101963115-101963410(-)$1	295	172	195	10.2042
GGCAGGUCGGUGGCCCCGCGCCC	chr1:1208163-1208424(-)$1	261	121	144	13.7108
GCGCGCGGGUUGGCUGGCCGCGC	chr1:155242891-155243133(-)$1	242	146	169	12.5759
ACUUCAGGCCCAAGGCCUGGGGC	chr7:44252170-44252483(+)$1	313	235	258	8.5467
GCCAUCCUGGACAGGCCGGGGUG	chr2:242707466-242707736(+)$1	270	154	177	13.5953
cccuguuuucucucuggaaaugg	chr22:22899769-22899990(-)$1	221	106	129	13.1146
GAGCUGUCCCAAAGAGGGAAAGC	chr16:29821985-29822235(+)$1	250	46	69	11.6813
GCUGCUUUUUAUUUCAGGAAGCC	chr3:183353909-183354137(+)$1	228	82	105	11.4446
CUGUUGGCAUCCUCAGUGCCUGC	chr21:46270353-46270665(-)$1	312	24	47	11.0638
CAGCAGCAGGAAAAACCUGcccc	chr7:100075826-100076057(-)$1	231	159	182	11.1584
AGGGAGUCUCAGGAGGAGGCUGC	chr11:61634359-61634646(+)$1	287	11	34	9.9995
CGGGCGCCGCAGGCAGCGGUGCC	chr19:1104611-1104910(+)$1	299	148	171	11.6854
CACCCCUGCCCCAAAGGCUAAGG	chr19:2426308-2426559(-)$1	251	160	183	11.8722
CAUGGAGGCCGUGAAGGCAGAGC	chr19:50880350-50880629(+)$1	279	174	197	12.0875
GCUGUAGGGUGCAGUGCCUGACA	chr19:1881842-1882094(-)$1	252	122	145	10.9521
CGGACCGGGGCGUUACCCCCACC	chr3:179065703-179066008(+)$1	305	224	247	11.4689
ccgggcuggugauggaccggcuc	chr19:1883620-1883878(-)$1	258	219	242	10.4034
GAAGGGGUGGGGUCGCCGCGGCU	chr7:5569448-5569689(-)$1	241	38	61	10.3756
GGGUGCAGGAGGGACAGGUGGUG	chr3:195635560-195635882(-)$1	322	189	212	10.0911
GCCCCUGAGCUCCCUGCUCCAGG	chr12:132402869-132403140(+)$1	271	240	263	11.4724
ACGGUCAUGACUUUUUUAUGAUU	chr22:24313517-24313830(-)$1	313	70	93	12.0068
GUGCGCACCCAUGGGGGUGUGUG	chr11:64511561-64511862(-)$1	301	192	215	12.6338
CAGCUUGAGCACGGAGCAUGGGG	chr17:46131863-46132116(+)$1	253	207	230	10.5282
CAAAGUCACUCGaaaggugacug	chr22:50013315-50013554(-)$1	239	112	135	10.7849
AUCCCAAGCCGUCCAGGCAGGAG	chr21:46644321-46644608(+)$1	287	28	51	11.5947
UUCUCUAGAUGGCCGAUCUAGAG	chr22:39917006-39917282(+)$1	276	248	271	13.5953
CUGAGAGGUUGGGGAAACUUCUU	chr16:89006207-89006431(-)$1	224	122	145	10.4314
UUCCCCCCUCGAUGGGAGCGGGG	chr2:191513913-191514165(+)$1	252	36	59	10.1146
AUGGCGGAGUGGGAGGCGCGCGG	chr4:2935988-2936298(-)$1	310	126	149	11.6462
CCUCAGGGGGUGUGGCCUCUUGG	chr3:49045317-49045611(+)$1	294	88	111	9.1248
CCGGGAAGUGGGAGACGCUGCGG	chr6:30881965-30882258(+)$1	293	179	202	11.5078
CUCGUCUCCCUUUCUGGGCAGCU	chr12:113826936-113827184(+)$1	248	7	30	10.2893
GUCUACACCAUAAUUUGGUGUCA	chr19:36245871-36246168(+)$1	297	132	155	9.7151
AGGUGUACAGCAAGGCUACACCU	chr22:19864236-19864492(-)$1	256	8	31	8.0742
ACCUUGCUGCGCCAGGUGGUGGG	chr5:179248513-179248779(+)$1	266	22	45	10.7078
CCCGCAGGCGCCUCCCGCGAGCC	chr2:61404991-61405237(+)$1	246	179	202	11.7751
cggAUCCGGCGGUGAGUgcggag	chr9:139560091-139560367(+)$1	276	167	190	10.3073
GUCCUUGACCACAGGGGUCACUU	chr22:22899480-22899721(-)$1	241	147	170	11.3199
gcccgcggcccgggcggcggcgg	chr11:95522561-95522848(-)$1	287	116	139	11.3277
gagggcgggCAGCUGGCUGGUCU	chr16:725959-726250(+)$1	291	94	117	12.0036
GCUGGUGGCUGGGGGAGUGGGUA	chr11:71710046-71710331(+)$1	285	130	153	12.4135
cgcggUGAGUCCGGAGCUUUGUG	chr15:64752848-64753082(+)$1	234	185	208	10.9138
GCAGGGGAGGGUAAGUGUGCUUU	chr16:67977016-67977320(-)$1	304	61	84	11.1604
GCGGUCUCGGAGGGCCCGAGGCG	chr17:7141273-7141506(-)$1	233	97	120	12.8372
UAGCCCGGACUGGGUCUGGGCUG	chr17:62503174-62503459(+)$1	285	127	150	9.1339
GUGGGCACGGGGGGGCCGGCCAG	chr4:1019110-1019375(+)$1	265	42	65	12.0101
UUUGUCCCCGCUCUCCGGGGGCG	chr1:26232505-26232755(-)$1	250	60	83	10.3328
CCCUGGGCGGGGCGGCUGUUGGG	chr21:46644408-46644668(+)$1	260	37	60	10.9142
ccggcccgggUAAGUCCCGGCCU	chr19:15442537-15442795(-)$1	258	140	163	12.0594
UGGUAAUGGCGACGGGUUUGGUA	chr7:106809430-106809674(+)$1	244	22	45	11.5498
CCUUGUCCUGAAGCCCAGCGACA	chr15:89441841-89442125(-)$1	284	36	59	12.0723
CAGCCGAAGCAGAGCGCGUGGUG	chr2:196522002-196522304(+)$1	302	185	208	11.1242
GAGGGGCCCCUCGCUGGGGCCCC	chr11:404655-404968(+)$1	313	16	39	13.3000

#DB
(((.(.((.(.....).)).)))	chr16:88722384-88722614(-)$1	1	26	49	10.5785
(.((((((((.....))))))))	chrX:11776553-11776840(+)$1	1	30	53	10.5127
..(((((..(.....).))))).	chr1:153954337-153954619(-)$1	1	129	152	11.1956
(.....((((.....))))....	chr8:101963115-101963410(-)$1	1	172	195	10.2042
((((((.(((.....)))...))	chr1:1208163-1208424(-)$1	1	121	144	13.7108
.(((((((.(.....).))))))	chr1:155242891-155243133(-)$1	1	146	169	12.5759
.(((((((((...))))))))).	chr7:44252170-44252483(+)$1	1	235	258	8.5467
((((((((((.....))))))))	chr2:242707466-242707736(+)$1	1	154	177	13.5953
((((((((((.....))))))))	chr22:22899769-22899990(-)$1	1	106	129	13.1146
..(((.((((.....)))).)))	chr16:29821985-29822235(+)$1	1	46	69	11.6813
)))(((((((.....))))))).	chr3:183353909-183354137(+)$1	1	82	105	11.4446
((((.(((((.....))))).))	chr21:46270353-46270665(-)$1	1	24	47	11.0638
(((..(((((.....)))))..)	chr7:100075826-100076057(-)$1	1	159	182	11.1584
((((((((((.....)))))).)	chr11:61634359-61634646(+)$1	1	11	34	9.9995
((((((((((.....))))))).	chr19:1104611-1104910(+)$1	1	148	171	11.6854
(.((((((((.....)))..)))	chr19:2426308-2426559(-)$1	1	160	183	11.8722
((((...(((.....)))....)	chr19:50880350-50880629(+)$1	1	174	197	12.0875
.((((.((((.....)))).)))	chr19:1881842-1882094(-)$1	1	122	145	10.9521
(((...((((.....))))...)	chr3:179065703-179066008(+)$1	1	224	247	11.4689
))((((((((.....))))))))	chr19:1883620-1883878(-)$1	1	219	242	10.4034
(.((..((((.....))))..))	chr7:5569448-5569689(-)$1	1	38	61	10.3756
.(.(((..(.....)..))).).	chr3:195635560-195635882(-)$1	1	189	212	10.0911
((((((((((.....))).))))	chr12:132402869-132403140(+)$1	1	240	263	11.4724
)(((((((((.....))))))))	chr22:24313517-24313830(-)$1	1	70	93	12.0068
((((((((((.....)).)))))	chr11:64511561-64511862(-)$1	1	192	215	12.6338
((.((((.((.....)).)))).	chr17:46131863-46132116(+)$1	1	207	230	10.5282
)).(((((((.....))))))))	chr22:50013315-50013554(-)$1	1	112	135	10.7849
.((((..(((.....)))..).)	chr21:46644321-46644608(+)$1	1	28	51	11.5947
((((((((((.....))))))))	chr22:39917006-39917282(+)$1	1	248	271	13.5953
(.((((((((.....))))))))	chr16:89006207-89006431(-)$1	1	122	145	10.4314
..((((((((.....))).))))	chr2:191513913-191514165(+)$1	1	36	59	10.1146
.(.(((..((.....)).))).)	chr4:2935988-2936298(-)$1	1	126	149	11.6462
(((((((((((...)))))))))	chr3:49045317-49045611(+)$1	1	88	111	9.1248
(((...((((.....)))).)))	chr6:30881965-30882258(+)$1	1	179	202	11.5078
(....(((((.....))).))..	chr12:113826936-113827184(+)$1	1	7	30	10.2893
((((((((((.....))))))..	chr19:36245871-36246168(+)$1	1	132	155	9.7151
((((((..(((...)))))))))	chr22:19864236-19864492(-)$1	1	8	31	8.0742
((((.(((((.....))))))))	chr5:179248513-179248779(+)$1	1	22	45	10.7078
((.((..(((.....)))..)).	chr2:61404991-61405237(+)$1	1	179	202	11.7751
((..((((((.....)).)))).	chr9:139560091-139560367(+)$1	1	167	190	10.3073
((((.(((((.....)))))...	chr22:22899480-22899721(-)$1	1	147	170	11.3199
(((.((.(((.....))).))))	chr11:95522561-95522848(-)$1	1	116	139	11.3277
.(((((.(((.....))).))))	chr16:725959-726250(+)$1	1	94	117	12.0036
((((.(.(((.....))).).))	chr11:71710046-71710331(+)$1	1	130	153	12.4135
((((..((((.....))))))))	chr15:64752848-64753082(+)$1	1	185	208	10.9138
((((((.(.(.....).).))))	chr16:67977016-67977320(-)$1	1	61	84	11.1604
((.(((((((.....))))))).	chr17:7141273-7141506(-)$1	1	97	120	12.8372
((((((((((...))))))))))	chr17:62503174-62503459(+)$1	1	127	150	9.1339
((.(((.(((.....))))))..	chr4:1019110-1019375(+)$1	1	42	65	12.0101
)..(((((((.....)))))))(	chr1:26232505-26232755(-)$1	1	60	83	10.3328
((((.(((((.....))))).))	chr21:46644408-46644668(+)$1	1	37	60	10.9142
(.((((.(((.....))))))).	chr19:15442537-15442795(-)$1	1	140	163	12.0594
((.(((..((.....))))).))	chr7:106809430-106809674(+)$1	1	22	45	11.5498
((((((((((.....))).))))	chr15:89441841-89442125(-)$1	1	36	59	12.0723
(.((((..((.....)).)))).	chr2:196522002-196522304(+)$1	1	185	208	11.1242
.(((((((((.....))))))))	chr11:404655-404968(+)$1	1	16	39	13.3000

#PSSM
d : 0.16	f : 0.16	= : 0.14	c : 0.08	e : 0.07	g : 0.07	b : 0.05	[ : 0.05	$ : 0.03	! : 0.03	a : 0.03	: : 0.03	" : 0.01	I : 0.01	# : 0.01	
= : 0.14	f : 0.14	d : 0.12	[ : 0.10	c : 0.08	e : 0.07	g : 0.07	i : 0.07	$ : 0.03	a : 0.03	b : 0.03	: : 0.03	! : 0.01	# : 0.01	
d : 0.16	f : 0.14	= : 0.12	[ : 0.12	e : 0.10	i : 0.07	c : 0.07	h : 0.05	g : 0.03	: : 0.03	$ : 0.01	b : 0.01	# : 0.01	! : 0.01	
d : 0.17	g : 0.12	= : 0.10	c : 0.10	e : 0.08	i : 0.07	f : 0.07	h : 0.05	[ : 0.03	! : 0.03	" : 0.03	b : 0.03	$ : 0.01	# : 0.01	a : 0.01	
g : 0.12	d : 0.12	= : 0.10	c : 0.08	[ : 0.08	e : 0.07	i : 0.07	h : 0.05	! : 0.05	f : 0.05	" : 0.05	a : 0.03	b : 0.03	$ : 0.01	# : 0.01	
e : 0.16	g : 0.12	= : 0.10	d : 0.10	i : 0.07	! : 0.07	c : 0.07	[ : 0.05	h : 0.05	f : 0.05	" : 0.05	b : 0.03	$ : 0.01	a : 0.01	
d : 0.19	e : 0.14	[ : 0.12	! : 0.12	g : 0.10	= : 0.08	i : 0.07	h : 0.05	b : 0.03	f : 0.03	" : 0.01	
c : 0.24	d : 0.14	! : 0.10	g : 0.10	= : 0.08	e : 0.08	i : 0.07	h : 0.05	f : 0.03	b : 0.01	[ : 0.01	a : 0.01	
c : 0.26	d : 0.12	b : 0.10	g : 0.08	e : 0.08	i : 0.07	= : 0.07	[ : 0.05	h : 0.05	f : 0.03	! : 0.01	a : 0.01	
c : 0.26	d : 0.12	b : 0.10	g : 0.08	e : 0.08	a : 0.07	i : 0.07	= : 0.07	h : 0.05	f : 0.03	n : 0.01	
n : 0.92	l : 0.03	= : 0.01	c : 0.01	
n : 0.92	l : 0.07	
n : 0.92	l : 0.07	
n : 0.92	l : 0.03	i : 0.01	= : 0.01	
n : 0.91	= : 0.03	i : 0.01	a : 0.01	c : 0.01	
c : 0.26	d : 0.12	b : 0.10	g : 0.08	e : 0.08	a : 0.07	i : 0.07	= : 0.07	h : 0.05	f : 0.03	2 : 0.01	
c : 0.26	d : 0.12	b : 0.10	g : 0.08	e : 0.08	] : 0.07	i : 0.07	= : 0.07	h : 0.05	f : 0.03	2 : 0.01	
c : 0.28	d : 0.12	g : 0.12	e : 0.10	] : 0.08	i : 0.07	= : 0.07	h : 0.05	f : 0.03	b : 0.01	a : 0.01	
d : 0.19	] : 0.14	g : 0.12	e : 0.10	= : 0.08	i : 0.07	c : 0.07	h : 0.05	2 : 0.05	f : 0.03	b : 0.01	3 : 0.01	4 : 0.01	
e : 0.14	g : 0.12	d : 0.10	= : 0.08	] : 0.07	i : 0.07	f : 0.07	2 : 0.07	c : 0.07	h : 0.05	4 : 0.03	3 : 0.03	b : 0.03	a : 0.01	
d : 0.14	g : 0.12	= : 0.08	] : 0.08	e : 0.07	i : 0.07	c : 0.07	f : 0.07	h : 0.05	3 : 0.05	b : 0.05	a : 0.03	4 : 0.03	2 : 0.03	
d : 0.16	e : 0.12	g : 0.12	= : 0.10	i : 0.07	f : 0.07	h : 0.05	] : 0.05	4 : 0.03	c : 0.03	2 : 0.03	3 : 0.03	b : 0.03	a : 0.01	7 : 0.01	> : 0.01	
e : 0.12	] : 0.12	d : 0.12	= : 0.10	f : 0.08	c : 0.07	h : 0.05	i : 0.05	3 : 0.03	g : 0.03	5 : 0.03	4 : 0.01	: : 0.01	b : 0.01	H : 0.01	a : 0.01	7 : 0.01	> : 0.01	2 : 0.01	

#score	629.1032531701615
#seq	56
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_UTR_m2_run2.txt

#BEAR
gggggqqqqqqqqgggg	chr19:41770836-41771103(+)$1	267	178	195	12.9518
d[cccqqqqqqqqccc]	chr4:761642-761885(-)$1	243	160	177	13.9903
""cccqqqqqqqqccc3	chr15:40914836-40915095(+)$1	259	101	118	14.3576
::cccqqqqqqqqccc:	chr3:40577141-40577408(+)$1	267	119	136	11.7865
gddddqqqqqqqqdddd	chr6:146228901-146229180(-)$1	279	39	56	12.9758
bacccqqqqqqqqccc3	chr19:58774400-58774683(+)$1	283	41	58	13.9828
+ddddqqqqqqqqdddd	chr3:121414284-121414551(-)$1	267	129	146	12.6271
eeeeeqqqqqqqqeeee	chr19:58772383-58772637(+)$1	254	76	93	12.5387
fffffqqqqqqqqffff	chr17:41245941-41246199(-)$1	258	3	20	12.3804
###bbqqqqqqqqbb44	chr19:11892263-11892581(+)$1	318	120	137	13.1273
ccc[aqqqqqqqqa]cc	chr21:39469438-39469708(-)$1	270	142	159	13.3830
:ddddqqqqqqqqdddd	chr8:91018065-91018366(+)$1	301	224	241	12.4071
"ddddqqqqqqqqdddd	chr10:129897179-129897480(-)$1	301	255	272	13.1810
eeeeeqqqqqqqqeeee	chr2:109086566-109086892(+)$1	326	43	60	12.5387
::cccqqqqqqqqccc:	chr15:40914291-40914596(+)$1	305	55	72	11.7865
ddcccqqqqqqqqccc3	chr6:111695121-111695407(-)$1	286	153	170	13.9210
###bbqqqqqqqqbb55	chr10:43084679-43085048(-)$1	369	195	212	11.7287
Dddddqqqqqqqqdddd	chr17:41245151-41245403(-)$1	252	206	223	12.1739
ffffaqqqqqqqqa]ff	chr19:40539816-40540129(-)$1	313	38	55	12.5943
::cccqqqqqqqqccc:	chr4:2330640-2330998(-)$1	358	168	185	11.7865
e:cccqqqqqqqqccc:	chr16:447631-447851(+)$1	220	16	33	12.2915
g[cccqqqqqqqqcccg	chr10:38409721-38410032(+)$1	311	239	256	13.9063
gg[bbqqqqqqqqbbgg	chr19:58770744-58770981(+)$1	237	10	27	12.7049
fffffqqqqqqqqffff	chr10:38411874-38412224(+)$1	350	108	125	12.3804
gggggqqqqqqqqgggg	chr6:147613311-147613583(+)$1	272	181	198	12.9518
eee[aqqqqqqqqa]ee	chr8:59473933-59474219(+)$1	286	60	77	12.8273
hhhhhqqqqqqqqhhhh	chr2:109087823-109088099(+)$1	276	92	109	11.4377
::cccqqqqqqqqccc:	chrX:106309991-106310251(-)$1	260	47	64	11.7865
hhhhhqqqqqqqqhhhh	chr14:76672762-76673016(+)$1	254	81	98	11.4377
###bbqqqqqqqqbb44	chr17:41246386-41246669(-)$1	283	30	47	13.1273
ccc[aqqqqqqqqa]cc	chr21:39469377-39469638(-)$1	261	72	89	13.3830
fffffqqqqqqqqffff	chr18:9254776-9255038(+)$1	262	170	187	12.3804
##cccqqqqqqqqccc4	chrX:106307587-106307921(-)$1	334	81	98	14.2979
Dddddqqqqqqqqdddd	chr2:109088096-109088376(+)$1	280	157	174	12.1739
##cccqqqqqqqqccc4	chrX:106307723-106307983(-)$1	260	143	160	14.2979
:ddddqqqqqqqqdddd	chr15:40914895-40915219(+)$1	324	0	17	12.4071
eeeeeqqqqqqqqeeee	chr15:40915230-40915535(+)$1	305	153	170	12.5387
!!cccqqqqqqqqccc2	chr1:203768885-203769154(+)$1	269	80	97	14.1406
eeeeeqqqqqqqqeeee	chr17:41246004-41246276(-)$1	272	43	60	12.5387
ddd[aqqqqqqqqa]dd	chr7:5107239-5107496(+)$1	257	136	153	12.9423
""cccqqqqqqqqccc4	chr1:203768747-203768965(+)$1	218	112	129	14.3335
c!!bbqqqqqqqqbbcc	chr15:40913962-40914228(+)$1	266	96	113	13.1595
fffffqqqqqqqqffff	chr17:58326625-58326906(-)$1	281	216	233	12.3804
fffffqqqqqqqqffff	chr4:759929-760202(-)$1	273	188	205	12.3804
[ddddqqqqqqqqdddd	chr10:38410483-38410729(+)$1	246	29	46	13.0938
dd[bbqqqqqqqqbb]d	chr1:46072982-46073241(+)$1	259	154	171	12.5719
fffffqqqqqqqqffff	chr7:5105407-5105668(+)$1	261	227	244	12.3804
::cccqqqqqqqqccc:	chr3:40577044-40577326(+)$1	282	216	233	11.7865
!ddddqqqqqqqqdddd	chr18:9254687-9254947(+)$1	260	124	141	13.1771
""cccqqqqqqqqccc3	chrX:106309747-106310031(-)$1	284	172	189	14.3576
eeeeeqqqqqqqqeeee	chr6:56966800-56967093(+)$1	293	186	203	12.5387
$$$bbqqqqqqqqbb55	chr18:9255272-9255515(+)$1	243	166	183	11.2110
$$$bbqqqqqqqqbb55	chr18:9255370-9255620(+)$1	250	68	85	11.2110
addddqqqqqqqqdddd	chr15:40914727-40914956(+)$1	229	168	185	13.1050
cccccqqqqqqqqccc]	chr3:15084401-15084659(-)$1	258	75	92	14.0074
eeeeeqqqqqqqqeeee	chr3:49057705-49058041(-)$1	336	259	276	12.5387
ff[bbqqqqqqqqbbff	chr6:111695581-111695840(-)$1	259	169	186	12.3951
b[cccqqqqqqqqccc]	chr17:43225832-43226100(+)$1	268	12	29	13.9940
:ddddqqqqqqqqdddd	chr5:112177766-112178081(+)$1	315	161	178	12.4071
::cccqqqqqqqqccc:	chr4:760050-760303(-)$1	253	141	158	11.7865

#otherMatches

#Seq PSSM
GAAGAACAAGAGGUUUU	chr19:41770836-41771103(+)$1	267	178	195	12.9518
UCUAACGUUACACUUAA	chr4:761642-761885(-)$1	243	160	177	13.9903
GAUGUGUUAGAGGACGA	chr15:40914836-40915095(+)$1	259	101	118	14.3576
agcuguaaaauaucaga	chr3:40577141-40577408(+)$1	267	119	136	11.7865
cacucguaagugggagu	chr6:146228901-146229180(-)$1	279	39	56	12.9758
CCUGUGAAUGUUAACAA	chr19:58774400-58774683(+)$1	283	41	58	13.9828
GAACUGUAUGGCAAGUU	chr3:121414284-121414551(-)$1	267	129	146	12.6271
GAGGUUAUUCUCUACCU	chr19:58772383-58772637(+)$1	254	76	93	12.5387
CAGUAGAGAGUAAUAUU	chr17:41245941-41246199(-)$1	258	3	20	12.3804
CUGGAAAUGGACCUCAU	chr19:11892263-11892581(+)$1	318	120	137	13.1273
GCACCUUUUAAUUGCUG	chr21:39469438-39469708(-)$1	270	142	159	13.3830
gauggaucugccaccau	chr8:91018065-91018366(+)$1	301	224	241	12.4071
UGGGCCAAGGUUUGCCC	chr10:129897179-129897480(-)$1	301	255	272	13.1810
GCUAAAAGAGAACUUAG	chr2:109086566-109086892(+)$1	326	43	60	12.5387
AUAGCCAAAAACAGCUU	chr15:40914291-40914596(+)$1	305	55	72	11.7865
AGUCAAAGCACAGUGAA	chr6:111695121-111695407(-)$1	286	153	170	13.9210
gguacuguaauuuguca	chr10:43084679-43085048(-)$1	369	195	212	11.7287
CGUUACUGGAAGUUAGC	chr17:41245151-41245403(-)$1	252	206	223	12.1739
AUAUCAAUGUGAAGAAU	chr19:40539816-40540129(-)$1	313	38	55	12.5943
ugggcccuaaauagcca	chr4:2330640-2330998(-)$1	358	168	185	11.7865
CGGCCggggugggggug	chr16:447631-447851(+)$1	220	16	33	12.2915
GGAguauucaaaaacuu	chr10:38409721-38410032(+)$1	311	239	256	13.9063
ACCAGUUAGGAGUCugu	chr19:58770744-58770981(+)$1	237	10	27	12.7049
gaggcaucaggaaguuu	chr10:38411874-38412224(+)$1	350	108	125	12.3804
ugugugaccuguagcau	chr6:147613311-147613583(+)$1	272	181	198	12.9518
aaauugucaaagaauuu	chr8:59473933-59474219(+)$1	286	60	77	12.8273
UUUUUGUCUCAAAAAGA	chr2:109087823-109088099(+)$1	276	92	109	11.4377
ACAAGUUAUCAGUCUUC	chrX:106309991-106310251(-)$1	260	47	64	11.7865
AGGGAAUAAAAAAUUUU	chr14:76672762-76673016(+)$1	254	81	98	11.4377
AUUCUGUAAUAAAAGCA	chr17:41246386-41246669(-)$1	283	30	47	13.1273
GCACCUUUUAAUUGCUG	chr21:39469377-39469638(-)$1	261	72	89	13.3830
AACAUACUAAAACAUGU	chr18:9254776-9255038(+)$1	262	170	187	12.3804
aaaacaaugaaaaguug	chrX:106307587-106307921(-)$1	334	81	98	14.2979
AGUUCAGUGUGAAGAAC	chr2:109088096-109088376(+)$1	280	157	174	12.1739
aaaacaaugaaaaguug	chrX:106307723-106307983(-)$1	260	143	160	14.2979
CCCAUAGAAAAAAGUGG	chr15:40914895-40915219(+)$1	324	0	17	12.4071
CUUUGAACUAUCCCAAA	chr15:40915230-40915535(+)$1	305	153	170	12.5387
UUGCUUUAAAAACAGUU	chr1:203768885-203769154(+)$1	269	80	97	14.1406
GCUUUAAUAUGUAAAAG	chr17:41246004-41246276(-)$1	272	43	60	12.5387
ggaacagcauacagauu	chr7:5107239-5107496(+)$1	257	136	153	12.9423
AGGCCCUCAAUCUGGUG	chr1:203768747-203768965(+)$1	218	112	129	14.3335
AAUGUAAAUUGUAACUC	chr15:40913962-40914228(+)$1	266	96	113	13.1595
aagugggcuuuagcacu	chr17:58326625-58326906(-)$1	281	216	233	12.3804
UGUGAAUUCUCUCUCAU	chr4:759929-760202(-)$1	273	188	205	12.3804
gagcaaauaaauauguu	chr10:38410483-38410729(+)$1	246	29	46	13.0938
AUAUGGAUAUAAGUAAA	chr1:46072982-46073241(+)$1	259	154	171	12.5719
CAGAGGCUAUGAGCUCU	chr7:5105407-5105668(+)$1	261	227	244	12.3804
agcuguaaaauaucaga	chr3:40577044-40577326(+)$1	282	216	233	11.7865
GAGAGGAGGGGAACUUU	chr18:9254687-9254947(+)$1	260	124	141	13.1771
acuuaacauucuaugac	chrX:106309747-106310031(-)$1	284	172	189	14.3576
CAUCUCAAAAACUGGAU	chr6:56966800-56967093(+)$1	293	186	203	12.5387
AAUUGGAAAAAAACAUC	chr18:9255272-9255515(+)$1	243	166	183	11.2110
AAUUGGAAAAAAACAUC	chr18:9255370-9255620(+)$1	250	68	85	11.2110
CCCAUAGAAAAAAGUGG	chr15:40914727-40914956(+)$1	229	168	185	13.1050
ACUACUUUUCUUUGUAU	chr3:15084401-15084659(-)$1	258	75	92	14.0074
UGGGGAAAAACCACCCC	chr3:49057705-49058041(-)$1	336	259	276	12.5387
UUUCUUCUUUCUUAGAA	chr6:111695581-111695840(-)$1	259	169	186	12.3951
AGUUGGAAGUUggcagg	chr17:43225832-43226100(+)$1	268	12	29	13.9940
AUGAAACAGCCCCUUCA	chr5:112177766-112178081(+)$1	315	161	178	12.4071
AAGGUGACUCAGAACCG	chr4:760050-760303(-)$1	253	141	158	11.7865

#DB
(((((........))))	chr19:41770836-41771103(+)$1	1	178	195	12.9518
(.(((........))).	chr4:761642-761885(-)$1	1	160	177	13.9903
..(((........))).	chr15:40914836-40915095(+)$1	1	101	118	14.3576
..(((........))).	chr3:40577141-40577408(+)$1	1	119	136	11.7865
(((((........))))	chr6:146228901-146229180(-)$1	1	39	56	12.9758
(((((........))).	chr19:58774400-58774683(+)$1	1	41	58	13.9828
.((((........))))	chr3:121414284-121414551(-)$1	1	129	146	12.6271
(((((........))))	chr19:58772383-58772637(+)$1	1	76	93	12.5387
(((((........))))	chr17:41245941-41246199(-)$1	1	3	20	12.3804
...((........))..	chr19:11892263-11892581(+)$1	1	120	137	13.1273
(((.(........).))	chr21:39469438-39469708(-)$1	1	142	159	13.3830
.((((........))))	chr8:91018065-91018366(+)$1	1	224	241	12.4071
.((((........))))	chr10:129897179-129897480(-)$1	1	255	272	13.1810
(((((........))))	chr2:109086566-109086892(+)$1	1	43	60	12.5387
..(((........))).	chr15:40914291-40914596(+)$1	1	55	72	11.7865
(((((........))).	chr6:111695121-111695407(-)$1	1	153	170	13.9210
...((........))..	chr10:43084679-43085048(-)$1	1	195	212	11.7287
)((((........))))	chr17:41245151-41245403(-)$1	1	206	223	12.1739
(((((........).))	chr19:40539816-40540129(-)$1	1	38	55	12.5943
..(((........))).	chr4:2330640-2330998(-)$1	1	168	185	11.7865
).(((........))).	chr16:447631-447851(+)$1	1	16	33	12.2915
(.(((........))))	chr10:38409721-38410032(+)$1	1	239	256	13.9063
((.((........))))	chr19:58770744-58770981(+)$1	1	10	27	12.7049
(((((........))))	chr10:38411874-38412224(+)$1	1	108	125	12.3804
(((((........))))	chr6:147613311-147613583(+)$1	1	181	198	12.9518
(((.(........).))	chr8:59473933-59474219(+)$1	1	60	77	12.8273
(((((........))))	chr2:109087823-109088099(+)$1	1	92	109	11.4377
..(((........))).	chrX:106309991-106310251(-)$1	1	47	64	11.7865
(((((........))))	chr14:76672762-76673016(+)$1	1	81	98	11.4377
...((........))..	chr17:41246386-41246669(-)$1	1	30	47	13.1273
(((.(........).))	chr21:39469377-39469638(-)$1	1	72	89	13.3830
(((((........))))	chr18:9254776-9255038(+)$1	1	170	187	12.3804
..(((........))).	chrX:106307587-106307921(-)$1	1	81	98	14.2979
(((((........))))	chr2:109088096-109088376(+)$1	1	157	174	12.1739
..(((........))).	chrX:106307723-106307983(-)$1	1	143	160	14.2979
.((((........))))	chr15:40914895-40915219(+)$1	1	0	17	12.4071
(((((........))))	chr15:40915230-40915535(+)$1	1	153	170	12.5387
..(((........))).	chr1:203768885-203769154(+)$1	1	80	97	14.1406
(((((........))))	chr17:41246004-41246276(-)$1	1	43	60	12.5387
(((.(........).))	chr7:5107239-5107496(+)$1	1	136	153	12.9423
..(((........))).	chr1:203768747-203768965(+)$1	1	112	129	14.3335
(..((........))))	chr15:40913962-40914228(+)$1	1	96	113	13.1595
(((((........))))	chr17:58326625-58326906(-)$1	1	216	233	12.3804
(((((........))))	chr4:759929-760202(-)$1	1	188	205	12.3804
.((((........))))	chr10:38410483-38410729(+)$1	1	29	46	13.0938
((.((........)).)	chr1:46072982-46073241(+)$1	1	154	171	12.5719
(((((........))))	chr7:5105407-5105668(+)$1	1	227	244	12.3804
..(((........))).	chr3:40577044-40577326(+)$1	1	216	233	11.7865
.((((........))))	chr18:9254687-9254947(+)$1	1	124	141	13.1771
..(((........))).	chrX:106309747-106310031(-)$1	1	172	189	14.3576
(((((........))))	chr6:56966800-56967093(+)$1	1	186	203	12.5387
...((........))..	chr18:9255272-9255515(+)$1	1	166	183	11.2110
...((........))..	chr18:9255370-9255620(+)$1	1	68	85	11.2110
(((((........))))	chr15:40914727-40914956(+)$1	1	168	185	13.1050
(((((........))).	chr3:15084401-15084659(-)$1	1	75	92	14.0074
(((((........))))	chr3:49057705-49058041(-)$1	1	259	276	12.5387
((.((........))))	chr6:111695581-111695840(-)$1	1	169	186	12.3951
(.(((........))).	chr17:43225832-43226100(+)$1	1	12	29	13.9940
.((((........))))	chr5:112177766-112178081(+)$1	1	161	178	12.4071
..(((........))).	chr4:760050-760303(-)$1	1	141	158	11.7865

#PSSM
: : 0.15	e : 0.13	f : 0.13	g : 0.08	# : 0.08	d : 0.06	" : 0.06	c : 0.06	b : 0.03	D : 0.03	h : 0.03	! : 0.03	$ : 0.03	+ : 0.01	[ : 0.01	a : 0.01	
d : 0.23	f : 0.13	: : 0.11	e : 0.11	# : 0.08	g : 0.05	[ : 0.05	" : 0.05	c : 0.05	h : 0.03	! : 0.03	$ : 0.03	a : 0.01	
c : 0.35	d : 0.19	e : 0.11	f : 0.11	# : 0.05	[ : 0.05	g : 0.03	h : 0.03	$ : 0.03	! : 0.01	
c : 0.31	d : 0.18	b : 0.15	f : 0.11	e : 0.09	[ : 0.06	g : 0.03	h : 0.03	
c : 0.31	d : 0.18	b : 0.15	e : 0.09	f : 0.09	a : 0.08	g : 0.03	h : 0.03	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.31	d : 0.18	b : 0.15	e : 0.09	f : 0.09	a : 0.08	g : 0.03	h : 0.03	
c : 0.31	d : 0.18	b : 0.15	e : 0.09	f : 0.09	] : 0.08	g : 0.03	h : 0.03	
c : 0.36	d : 0.19	f : 0.13	e : 0.11	g : 0.05	5 : 0.05	4 : 0.03	h : 0.03	] : 0.01	
d : 0.21	f : 0.13	: : 0.11	e : 0.11	4 : 0.08	g : 0.06	3 : 0.06	] : 0.05	c : 0.05	5 : 0.05	h : 0.03	2 : 0.01	

#score	766.9896121158922
#seq	60
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_CDS_m3_run2.txt

#BEAR
gggggggpppppppgggggg	chr6:170844132-170844415(-)$1	283	126	146	13.8478
e[eeeeepppppppeeeee]	chr18:43666027-43666314(-)$1	287	106	126	12.8755
=====[apppppppa]====	chr6:33382627-33382933(+)$1	306	127	147	13.9958
====!!apppppppa22===	chr21:35275745-35275997(-)$1	252	158	178	13.2472
ddd[cccpppppppccc]dd	chr19:49611424-49611708(+)$1	284	176	196	12.7790
iiiiiiipppppppiiiiii	chr13:27830337-27830571(+)$1	234	8	28	13.4484
ggggggrrrrrrrrrggggg	chr2:70442405-70442689(-)$1	284	24	44	11.4633
ffffffrrrrrrrrrfffff	chr22:22892403-22892615(-)$1	212	175	195	11.4418
=======ppppppp======	chr1:203819010-203819254(+)$1	244	206	226	13.8912
ffffffrrrrrrrrrfffff	chr22:22892385-22892589(-)$1	204	149	169	11.4418
fffffbbpppppppbb22ff	chr1:205052518-205052852(-)$1	334	209	229	12.3925
:ffffffpppppppffffff	chr7:128505349-128505602(+)$1	253	32	52	13.3210
ggggggrrrrrrrrrggggg	chr5:167946001-167946269(+)$1	268	68	88	11.4633
ggggg[apppppppa]gggg	chr12:120634433-120634691(-)$1	258	146	166	14.1516
ggggcccpppppppccc]gg	chr17:46058703-46058955(+)$1	252	191	211	13.9898
:ffffffpppppppffffff	chr9:130210006-130210260(-)$1	254	108	128	13.3210
$$$ddddpppppppddddee	chr2:170396510-170396790(-)$1	280	130	150	11.4250
ffffffrrrrrrrrrfffff	chr7:54819923-54820214(-)$1	291	132	152	11.4418
gggggggpppppppgggggg	chr17:43227213-43227473(+)$1	260	10	30	13.8478
:ffffffpppppppffffff	chr18:21061131-21061373(+)$1	242	22	42	13.3210
dddd[bbrrrrrrrrrbb]d	chr11:118279657-118279919(+)$1	262	187	207	8.7654
!!eeeeepppppppeeeee2	chr3:141644230-141644476(+)$1	246	184	204	12.8511
:ffffffpppppppffffff	chr17:61895032-61895257(+)$1	225	146	166	13.3210
dccc[bbpppppppbbccc]	chr7:142638205-142638501(-)$1	296	233	253	12.2533
eeeddddpppppppdddd]e	chr22:22892047-22892279(-)$1	232	176	196	11.7719
""eeeeepppppppeeeee2	chr1:249144369-249144718(-)$1	349	306	326	12.7288
"""ddddpppppppddddff	chr14:50050230-50050505(-)$1	275	198	218	12.3416
&&eeeeepppppppeeeee8	chr17:41154588-41154809(+)$1	221	38	58	11.2347
:ffffffpppppppffffff	chr17:61895006-61895232(+)$1	226	172	192	13.3210
:ffffffpppppppffffff	chr1:76260186-76260427(+)$1	241	192	212	13.3210
####cccpppppppcccccc	chr12:57106469-57106690(-)$1	221	187	207	13.1578
fff!!bbpppppppbb22ff	chr16:778853-779104(+)$1	251	177	197	12.2844
!ffffffqqqqqqqqfffff	chr18:9126751-9127006(+)$1	255	96	116	6.9718
d:eeeeepppppppeeeee:	chrM:9859-10076(+)$1	217	153	173	10.5076
!bb[cccpppppppcccbb2	chr19:18390661-18390967(-)$1	306	221	241	12.3719
gg!!cccqqqqqqqqcccgg	chr10:103546060-103546381(-)$1	321	212	232	6.4288
gggggggqqqqqqqqggggg	chr1:47717050-47717327(-)$1	277	207	227	6.6313
gggddddrrrrrrrrrdddd	chr20:60963410-60963640(+)$1	230	139	159	9.5245
dd!!cccpppppppccc]dd	chr22:22049571-22049805(+)$1	234	8	28	12.9251
ggggg[apppppppa]gggg	chr14:51371861-51372269(-)$1	408	360	380	14.1516
[ffffffpppppppffffff	chr4:159634224-159634499(-)$1	275	132	152	14.2543
ddddcccpppppppccc]dd	chr17:1680579-1680894(+)$1	315	6	26	12.5279
iiiiiirrrrrrrrriiiii	chr19:13064945-13065210(-)$1	265	191	211	11.0220
ggg[cccpppppppccc]gg	chr2:198352525-198352778(-)$1	253	182	202	14.0284
ffffffrrrrrrrrrfffff	chr2:166801931-166802242(-)$1	311	197	217	11.4418
eeeee[apppppppa]eeee	chrM:14163-14389(-)$1	226	21	41	13.0374
!ffffffpppppppffffff	chr22:38882147-38882394(-)$1	247	196	216	14.3010

#otherMatches

#Seq PSSM
CAAUCAGUUCAGACCUGGUU	chr6:170844132-170844415(-)$1	283	126	146	13.8478
AAGCUGGAAUUGGCUCAGUA	chr18:43666027-43666314(-)$1	287	106	126	12.8755
GGGGAGGGGUCUCACGUCCC	chr6:33382627-33382933(+)$1	306	127	147	13.9958
GAUUGUCUAAAAGUGUUGGU	chr21:35275745-35275997(-)$1	252	158	178	13.2472
UCUGGGCAACGACAGCCGAG	chr19:49611424-49611708(+)$1	284	176	196	12.7790
AAUGUGCGUAUUGAGCACAU	chr13:27830337-27830571(+)$1	234	8	28	13.4484
AGAAUUUGUAUUGGUGAUUC	chr2:70442405-70442689(-)$1	284	24	44	11.4633
CAGGAUAUCAAGAUGAUCCU	chr22:22892403-22892615(-)$1	212	175	195	11.4418
UUGCCAGUAACUUCCUGGCA	chr1:203819010-203819254(+)$1	244	206	226	13.8912
CAGGAUAUCAAGAUGAUCCU	chr22:22892385-22892589(-)$1	204	149	169	11.4418
UGGCUGCCCAGGAAGCCAAG	chr1:205052518-205052852(-)$1	334	209	229	12.3925
CGGCAGCCCCCAGAGCUGUC	chr7:128505349-128505602(+)$1	253	32	52	13.3210
UUUUCUAUCUUUUCAGGAAA	chr5:167946001-167946269(+)$1	268	68	88	11.4633
UAUUUGCAAAACAAGGAAAU	chr12:120634433-120634691(-)$1	258	146	166	14.1516
CUUCUCCGCUUUUGGGAUGA	chr17:46058703-46058955(+)$1	252	191	211	13.9898
AGUGACAUUUUCAUUGUUAC	chr9:130210006-130210260(-)$1	254	108	128	13.3210
CUUGGUUUCUCUUUGGCCAC	chr2:170396510-170396790(-)$1	280	130	150	11.4250
UUCAUCUUAGAGAUUGGUGA	chr7:54819923-54820214(-)$1	291	132	152	11.4418
GGCCUGUACUCCAAGCGGGC	chr17:43227213-43227473(+)$1	260	10	30	13.8478
AUGAAUGAAGAUCACGUUCA	chr18:21061131-21061373(+)$1	242	22	42	13.3210
UUUAUUAUUUGAGUGUUGUU	chr11:118279657-118279919(+)$1	262	187	207	8.7654
GCUCCUAACAACACUGGGAA	chr3:141644230-141644476(+)$1	246	184	204	12.8511
ACAGGGCCAUAACAGUCCUG	chr17:61895032-61895257(+)$1	225	146	166	13.3210
AGCAAGAUUUCCUUUCUGCU	chr7:142638205-142638501(-)$1	296	233	253	12.2533
CUUAUUGCAGUAAACAAUAA	chr22:22892047-22892279(-)$1	232	176	196	11.7719
AUGAGCUCUCCUCCAGCUUU	chr1:249144369-249144718(-)$1	349	306	326	12.7288
AUUUGAAAAAACCCUUCAGU	chr14:50050230-50050505(-)$1	275	198	218	12.3416
UUGGGCUGUAUAGGGGCCCC	chr17:41154588-41154809(+)$1	221	38	58	11.2347
ACAGGGCCAUAACAGUCCUG	chr17:61895006-61895232(+)$1	226	172	192	13.3210
ACAUUUCUGUAUUUGAAGUG	chr1:76260186-76260427(+)$1	241	192	212	13.3210
UCUUGCUAAAUAUCAGCCAA	chr12:57106469-57106690(-)$1	221	187	207	13.1578
CCACUGUGCCGUCGACUCUG	chr16:778853-779104(+)$1	251	177	197	12.2844
AUAUUGAAGAAAUUAUUGAU	chr18:9126751-9127006(+)$1	255	96	116	6.9718
CCGUUAACUUCCAAUUAACU	chrM:9859-10076(+)$1	217	153	173	10.5076
AGAAGAAAAAAAAAUUCUCC	chr19:18390661-18390967(-)$1	306	221	241	12.3719
CUGCACCUUGUGAAUGGUAG	chr10:103546060-103546381(-)$1	321	212	232	6.4288
AUCUGUGGGGACCAACGCAG	chr1:47717050-47717327(-)$1	277	207	227	6.6313
UUGUCAUAAAUAAAUAAUGA	chr20:60963410-60963640(+)$1	230	139	159	9.5245
UGGGAGGGGUUGGGCCUACA	chr22:22049571-22049805(+)$1	234	8	28	12.9251
GCAAAUCUAGUGAUGCUUUG	chr14:51371861-51372269(-)$1	408	360	380	14.1516
CAAGCUGCAACCUAUAGCUU	chr4:159634224-159634499(-)$1	275	132	152	14.2543
GGGCGGGAACCACCCCCAGC	chr17:1680579-1680894(+)$1	315	6	26	12.5279
CUUUGUCCCUUCCCAAUAAA	chr19:13064945-13065210(-)$1	265	191	211	11.0220
AUUGACCCAACAAAGGUAAA	chr2:198352525-198352778(-)$1	253	182	202	14.0284
GGUAGUAAACAGGUAGCUAU	chr2:166801931-166802242(-)$1	311	197	217	11.4418
GUGCUGUGGGUGAAAGAGUA	chrM:14163-14389(-)$1	226	21	41	13.0374
UUAUGGCACCAGUAGCUAUA	chr22:38882147-38882394(-)$1	247	196	216	14.3010

#DB
(((((((.......))))))	chr6:170844132-170844415(-)$1	1	126	146	13.8478
(.(((((.......))))).	chr18:43666027-43666314(-)$1	1	106	126	12.8755
(((((.(.......).))))	chr6:33382627-33382933(+)$1	1	127	147	13.9958
((((..(.......)..)))	chr21:35275745-35275997(-)$1	1	158	178	13.2472
(((.(((.......))).))	chr19:49611424-49611708(+)$1	1	176	196	12.7790
(((((((.......))))))	chr13:27830337-27830571(+)$1	1	8	28	13.4484
((((((.........)))))	chr2:70442405-70442689(-)$1	1	24	44	11.4633
((((((.........)))))	chr22:22892403-22892615(-)$1	1	175	195	11.4418
(((((((.......))))))	chr1:203819010-203819254(+)$1	1	206	226	13.8912
((((((.........)))))	chr22:22892385-22892589(-)$1	1	149	169	11.4418
(((((((.......))..))	chr1:205052518-205052852(-)$1	1	209	229	12.3925
.((((((.......))))))	chr7:128505349-128505602(+)$1	1	32	52	13.3210
((((((.........)))))	chr5:167946001-167946269(+)$1	1	68	88	11.4633
(((((.(.......).))))	chr12:120634433-120634691(-)$1	1	146	166	14.1516
(((((((.......))).))	chr17:46058703-46058955(+)$1	1	191	211	13.9898
.((((((.......))))))	chr9:130210006-130210260(-)$1	1	108	128	13.3210
...((((.......))))))	chr2:170396510-170396790(-)$1	1	130	150	11.4250
((((((.........)))))	chr7:54819923-54820214(-)$1	1	132	152	11.4418
(((((((.......))))))	chr17:43227213-43227473(+)$1	1	10	30	13.8478
.((((((.......))))))	chr18:21061131-21061373(+)$1	1	22	42	13.3210
((((.((.........)).)	chr11:118279657-118279919(+)$1	1	187	207	8.7654
..(((((.......))))).	chr3:141644230-141644476(+)$1	1	184	204	12.8511
.((((((.......))))))	chr17:61895032-61895257(+)$1	1	146	166	13.3210
((((.((.......))))).	chr7:142638205-142638501(-)$1	1	233	253	12.2533
(((((((.......)))).)	chr22:22892047-22892279(-)$1	1	176	196	11.7719
..(((((.......))))).	chr1:249144369-249144718(-)$1	1	306	326	12.7288
...((((.......))))))	chr14:50050230-50050505(-)$1	1	198	218	12.3416
..(((((.......))))).	chr17:41154588-41154809(+)$1	1	38	58	11.2347
.((((((.......))))))	chr17:61895006-61895232(+)$1	1	172	192	13.3210
.((((((.......))))))	chr1:76260186-76260427(+)$1	1	192	212	13.3210
....(((.......))))))	chr12:57106469-57106690(-)$1	1	187	207	13.1578
(((..((.......))..))	chr16:778853-779104(+)$1	1	177	197	12.2844
.((((((........)))))	chr18:9126751-9127006(+)$1	1	96	116	6.9718
).(((((.......))))).	chrM:9859-10076(+)$1	1	153	173	10.5076
.((.(((.......))))).	chr19:18390661-18390967(-)$1	1	221	241	12.3719
((..(((........)))))	chr10:103546060-103546381(-)$1	1	212	232	6.4288
(((((((........)))))	chr1:47717050-47717327(-)$1	1	207	227	6.6313
)))((((.........))))	chr20:60963410-60963640(+)$1	1	139	159	9.5245
((..(((.......))).))	chr22:22049571-22049805(+)$1	1	8	28	12.9251
(((((.(.......).))))	chr14:51371861-51372269(-)$1	1	360	380	14.1516
.((((((.......))))))	chr4:159634224-159634499(-)$1	1	132	152	14.2543
(((((((.......))).))	chr17:1680579-1680894(+)$1	1	6	26	12.5279
((((((.........)))))	chr19:13064945-13065210(-)$1	1	191	211	11.0220
(((.(((.......))).))	chr2:198352525-198352778(-)$1	1	182	202	14.0284
((((((.........)))))	chr2:166801931-166802242(-)$1	1	197	217	11.4418
(((((.(.......).))))	chrM:14163-14389(-)$1	1	21	41	13.0374
.((((((.......))))))	chr22:38882147-38882394(-)$1	1	196	216	14.3010

#PSSM
g : 0.23	d : 0.12	f : 0.12	: : 0.12	! : 0.08	e : 0.06	= : 0.06	i : 0.04	" : 0.04	$ : 0.02	& : 0.02	# : 0.02	[ : 0.02	
f : 0.31	g : 0.23	d : 0.08	= : 0.06	i : 0.04	e : 0.04	" : 0.04	[ : 0.02	$ : 0.02	! : 0.02	c : 0.02	& : 0.02	# : 0.02	: : 0.02	b : 0.02	
f : 0.31	g : 0.21	e : 0.14	= : 0.06	d : 0.06	i : 0.04	! : 0.04	$ : 0.02	c : 0.02	" : 0.02	# : 0.02	b : 0.02	
f : 0.29	g : 0.17	e : 0.12	d : 0.12	= : 0.06	[ : 0.06	! : 0.06	i : 0.04	c : 0.02	# : 0.02	
f : 0.29	c : 0.17	g : 0.14	e : 0.12	d : 0.08	= : 0.04	! : 0.04	i : 0.04	[ : 0.04	
f : 0.27	c : 0.17	g : 0.10	e : 0.10	[ : 0.08	b : 0.08	d : 0.08	i : 0.04	! : 0.02	= : 0.02	
f : 0.19	c : 0.17	r : 0.14	e : 0.10	a : 0.10	b : 0.08	d : 0.08	g : 0.06	i : 0.02	= : 0.02	
p : 0.74	r : 0.19	q : 0.06	
p : 0.74	r : 0.19	q : 0.06	
p : 0.74	r : 0.19	q : 0.06	
p : 0.74	r : 0.19	q : 0.06	
p : 0.74	r : 0.19	q : 0.06	
p : 0.74	r : 0.19	q : 0.06	
p : 0.74	r : 0.19	q : 0.06	
r : 0.19	f : 0.17	c : 0.14	e : 0.10	a : 0.10	b : 0.06	d : 0.06	q : 0.06	g : 0.04	i : 0.02	= : 0.02	
f : 0.27	c : 0.17	g : 0.10	e : 0.10	] : 0.08	b : 0.06	d : 0.06	i : 0.04	r : 0.04	2 : 0.02	= : 0.02	
f : 0.27	c : 0.19	g : 0.14	e : 0.12	d : 0.08	2 : 0.06	= : 0.04	i : 0.04	b : 0.02	
f : 0.27	g : 0.14	e : 0.12	] : 0.10	d : 0.08	= : 0.06	c : 0.06	i : 0.04	2 : 0.04	b : 0.04	
f : 0.34	g : 0.21	e : 0.14	d : 0.08	= : 0.06	i : 0.04	] : 0.04	c : 0.04	b : 0.02	
f : 0.34	g : 0.21	d : 0.10	= : 0.06	e : 0.06	2 : 0.06	] : 0.04	i : 0.04	8 : 0.02	c : 0.02	: : 0.02	

#score	574.5862443254658
#seq	47
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_transcript_m2_run2.txt

#BEAR
ff[bb[eeeeeeeeee[ddddllldddd]eeeee333ee	chr19:807356-807625(+)$1	269	42	81	12.8660
==========[ffffffcccmmmmccc]ffffff22===	chr1:1158429-1158669(-)$1	240	166	205	14.9632
ddd!!ggggggg$$$$$cccmmmmccc4444ggggggg3	chr20:45957794-45958072(-)$1	278	191	230	14.8158
2ccc:gggggggccc[cccooooooccc]ccc333gggg	chr3:9479077-9479385(+)$1	308	85	124	12.8450
ddd[a!!ccc!!a[eeeeemmmmeeeee]a22ccc4444	chr5:53387716-53388013(-)$1	297	184	223	12.2558
!ccc!!ffffff!!ccc[bbmmmmbbcccffffff22cc	chr7:128233096-128233356(+)$1	260	46	85	12.6000
====================mmmm==============:	chr8:103408733-103409016(-)$1	283	129	168	15.1156
gggg!!ggggggg[ffffffmmmmffffff]gggggggg	chr17:78607812-78608099(+)$1	287	206	245	13.6669
ee[ccc[bb[eeeee[ddddmmmmdddd]eeeee]bb]c	chr8:91512760-91513037(+)$1	277	11	50	15.4973
fff!!ggggggg####ddddmmmmdddd4444ggggggg	chr11:71195725-71195983(+)$1	258	124	163	16.8458
ccc!!ffffffdddd[ddddmmmmdddd]dddd4444ff	chr3:176813958-176814235(-)$1	277	196	235	14.7975
dd[hhhhhhhh[ccc[ddddmmmmdddd333ccc]hhhh	chr22:21998371-21998670(+)$1	299	132	171	15.0142
bb[a####ggggggg[ddddmmmmddddggggggg4444	chr7:120835866-120836115(+)$1	249	71	110	16.2183
eeeeeacccbb[ccc!!cccmmmmcccccc]bb]ccc]a	chr11:65196773-65196979(+)$1	206	78	117	13.0634
===========!!bbcccbbmmmmbb]ccc22bb22===	chr22:20070823-20071065(+)$1	242	114	153	13.2078
c[ccc!!hhhhhhhh!!cccmmmmccc]hhhhhhhh22c	chr4:3101831-3102068(+)$1	237	151	190	12.5225
======ffffffccc[ddddmmmmdddd]ccc]ffffff	chr3:15140240-15140495(-)$1	255	111	150	15.4685
%ffffff[eeeee####ccclllccc333eeeee333ff	chr3:160232743-160232968(-)$1	225	17	56	11.7696
=========!!dddd[cccooooooccc]dddd22====	chr17:79048460-79048745(+)$1	285	8	47	13.9451
!dddd==========[ddddmmmmdddd==========7	chr7:1478857-1479094(-)$1	237	52	91	16.7660
cc####a[ggggggg[ddddmmmmdddd]ggggggg]ac	chr7:141467555-141467830(+)$1	275	76	115	17.0229
eee[ccc!!bba[eeeeeccclllccc]eeeee22a]bb	chr1:21932083-21932315(-)$1	232	122	161	11.4750
===========!!gggggggmmmmggggggg>>>>>>>>	chr8:676409-676701(-)$1	292	235	274	13.2258
!eeeeeiiiiiiiii!!cccmmmmccc22iiiiiiiii]	chr9:125971984-125972265(-)$1	281	91	130	15.4604
eeeeedddd[dddd!!ddddmmmmdddd22dddd22ddd	chr18:8723311-8723634(+)$1	323	206	245	13.6316
:hhhhhhhh[ccc[a[ddddmmmmdddd]accc]hhhhh	chr21:22627127-22627389(+)$1	262	66	105	13.9245
ffff[bb[ccceeeee[cccmmmmccceeeee]cccbbf	chr19:46334374-46334668(-)$1	294	12	51	12.6035
bb!!ccc"""dddd[a[cccmmmmccc]a]dddd333cc	chr20:48311231-48311522(-)$1	291	163	202	14.0913
+ggggggga[eeeee[ddddmmmmdddd]eeeee]a]gg	chr20:36146318-36146578(-)$1	260	173	212	16.8177
ccc!!ddddeeeee!!ddddmmmmdddd4444eeeee99	chr19:18827732-18828043(+)$1	311	228	267	13.9431
dd]cccggggggg!!ddddnnnnndddd4444ggggggg	chr7:91576376-91576647(+)$1	271	208	247	13.0079
gggggg!!ccc!!gggggggmmmmgggggggccc22ggg	chr7:40094668-40094954(+)$1	286	162	201	14.5851
fffffeeeee!!ccc[ddddmmmmdddd]ccceeeee22	chr8:99669341-99669597(-)$1	256	66	105	14.4303
!dddd"""ggggggg[ddddmmmmdddd]gggggggddd	chr17:60139793-60140062(-)$1	269	154	193	16.2958
=====!!ggggggg!!ddddmmmmdddd22ggggggg55	chr8:676553-676830(-)$1	277	9	48	16.0112
gggg:ccc[ffffff[ddddmmmmdddd]ffffffccc:	chr20:47254457-47254769(-)$1	312	146	185	13.7239
:ggggggg!!ffffff!!ccclllccc22ffffffgggg	chr18:8760597-8760855(+)$1	258	183	222	11.6173
eee"""ccc[ccc[ddddoooooodddd]cccccc333e	chr7:158714239-158714555(+)$1	316	150	189	13.8150
[dddd[eeeee!!a[eeeeemmmmeeeee]a]eeeee]d	chr16:68001095-68001375(-)$1	280	147	186	12.5146
[dddd[a"""bbccc!!cccmmmmccc4444ccc]bb33	chr1:27855063-27855426(+)$1	363	113	152	14.4229
Aiiiiiiiii!!eeeee[bbmmmmbb]eeeeeiiiiiii	chr11:64853276-64853568(+)$1	292	211	250	13.3251
!!dddd"""ffffff[cccoooooocccffffff333dd	chrX:77036371-77036638(-)$1	267	84	123	12.3522
gggggg####ffffff!!bbmmmmbbffffff4444ggg	chr16:11570138-11570491(-)$1	353	81	120	12.7479
ddddiiiiiiiiieeeeebbmmmmbb]eeeee22iiiii	chr3:160219245-160219521(-)$1	276	123	162	13.0272
cc[ggggggg[a[bb[ddddmmmmddddbb]a]gggggg	chr11:3405826-3406105(+)$1	279	198	237	15.6351
fff[ccc!!ccc[bb[cccooooooccc]bb]ccc22cc	chr10:134568540-134568817(+)$1	277	51	90	12.3839
a[ggggggg!!dddd[ddddooooooddddddddggggg	chr7:106693888-106694169(+)$1	281	233	272	13.1745
##a[iiiiiiiii!!eeeeemmmmeeeee333iiiiiii	chr18:2686538-2686808(+)$1	270	202	241	15.1613
eeeee[a"""eeeeeddddmmmmdddd333eeeeea]ee	chr12:124946533-124946791(-)$1	258	140	179	13.4172
:ggggggg[ccc!!ddddoooooodddd22ccc]ggggg	chr2:169743344-169743645(-)$1	301	177	216	13.2621
gggggg"""eeeee!!ddddmmmmdddd]eeeeeggggg	chr17:75089245-75089536(+)$1	291	17	56	17.0746
!!ccc[dddd[a"""eeeeemmmmeeeee333a]ddddc	chr21:44488756-44489053(-)$1	297	144	183	12.7120
gggg:dddd[eeeee[ddddmmmmddddeeeee]dddd:	chr4:103724051-103724357(-)$1	306	219	258	12.8316
+ggggggga[eeeee[ddddmmmmdddd]eeeee]a]gg	chr20:36146238-36146518(-)$1	280	113	152	16.8177

#otherMatches

#Seq PSSM
UCUGCCGGCAUGUGAGUGAAGGUGCUUCUCUUACCGUGU	chr19:807356-807625(+)$1	269	42	81	12.8660
aguacgugugugcgugccguguguacgagugugcugugc	chr1:1158429-1158669(-)$1	240	166	205	14.9632
AGUUUUAAGUUUUGCUUGGUCAUUGCCUCCUGAGCUUGC	chr20:45957794-45958072(-)$1	278	191	230	14.8158
UGCCAAAAGGAGAUUUGAUUAUGCUGUCUGGUAUCCUCC	chr3:9479077-9479385(+)$1	308	85	124	12.8450
AGAGGGAGAGGAAUGUGCGGAAAUGCAUUUGACUUGGGA	chr5:53387716-53388013(-)$1	297	184	223	12.2558
gcuaauuagacauugugaguugacgccacugucugugug	chr7:128233096-128233356(+)$1	260	46	85	12.6000
guguguguguauauauauauguguguauauauauauauU	chr8:103408733-103409016(-)$1	283	129	168	15.1156
ugcguguguguacugugugugcgugcauacuguaugcgu	chr17:78607812-78608099(+)$1	287	206	245	13.6669
uaauaauuuuuGUUUCCUUUGAAUGAAGAAAAUAUAAUU	chr8:91512760-91513037(+)$1	277	11	50	15.4973
caugaguguaugagaguacaagugugugaauguaugcac	chr11:71195725-71195983(+)$1	258	124	163	16.8458
CCAUUUCUAUAUAUUUGCACAGAUGUGCUAGUAAAUUUG	chr3:176813958-176814235(-)$1	277	196	235	14.7975
GCGUCUGCAGGGCCACUCUUGGCAGAGACUUUGGGUUUG	chr22:21998371-21998670(+)$1	299	132	171	15.0142
GAGAAAUAGGGGUUUUCUUGAAUCCAGGAAGCCUUGCUG	chr7:120835866-120836115(+)$1	249	71	110	16.2183
ugcuccuccgacggaucgagucugcuuucccucuggaug	chr11:65196773-65196979(+)$1	206	78	117	13.0634
AACUUGCCCAGGACUGCCCACCACUGAGGUCUGGGGCUG	chr22:20070823-20071065(+)$1	242	114	153	13.2078
GGACUAAUUGCCACUACUGGAUCCUCAAAGUGGUAAGAA	chr4:3101831-3102068(+)$1	237	151	190	12.5225
GGGCUCUGUGUGGUUGUGCGGUUACGCGGGGCGUAUACA	chr3:15140240-15140495(-)$1	255	111	150	15.4685
AAUUCUUAUAAGUUUAGUGUUUUAUAGGUACUUAAUAGA	chr3:160232743-160232968(-)$1	225	17	56	11.7696
gaugcguaugagugccugugugugugcaugcacggaugc	chr17:79048460-79048745(+)$1	285	8	47	13.9451
ccguguucauguauguggugcauguacccauguguggau	chr7:1478857-1479094(-)$1	237	52	91	16.7660
ACUAAAAGACAUAUAAguguaugugcauaugugugugug	chr7:141467555-141467830(+)$1	275	76	115	17.0229
UACUGUCAAGCCUUGGGUUUCUGGGAGCACCUACUGUGU	chr1:21932083-21932315(-)$1	232	122	161	11.4750
ugcaccuguguguugugugCCUGUGUACACGUGUCUGCC	chr8:676409-676701(-)$1	292	235	274	13.2258
CUUGUUUAUAUAUAUGAAUAAAUUUGUGUGUGUGUGUAU	chr9:125971984-125972265(-)$1	281	91	130	15.4604
AGGGGUCCGUGAGACAGCAUCUCCAUGCCUUCUCUCUGG	chr18:8723311-8723634(+)$1	323	206	245	13.6316
AAUAUGUACCCACUGGAUAAUAGUUugugugugugugug	chr21:22627127-22627389(+)$1	262	66	105	13.9245
UGUCACUCAGCCCCGGUGAGUCCUCUUCUGGGUGCUAGG	chr19:46334374-46334668(-)$1	294	12	51	12.6035
gcuggguguaguuuucuggguuuuccucguggaugaaau	chr20:48311231-48311522(-)$1	291	163	202	14.0913
UGGUGUGCCCUGUGUGUGUGUGUGUACAAAUACAUGUGU	chr20:36146318-36146578(-)$1	260	173	212	16.8177
ACUGGCGCUGGGCUGGAGACAUGAGUUUGGGGAGCUUUG	chr19:18827732-18828043(+)$1	311	228	267	13.9431
AUUUAUGUGuucauuuguucaaccaacauuuuugaaugc	chr7:91576376-91576647(+)$1	271	208	247	13.0079
AUCUAAUUAUGUAAAGUGGAGUGGUUCAUUUCAUUUUUA	chr7:40094668-40094954(+)$1	286	162	201	14.5851
uauuuucauaguaacuaucucgaaggguuguuugugauu	chr8:99669341-99669597(-)$1	256	66	105	14.4303
UGCUAUUUGAUUAACUUAUGAAGGCAUAUGUUAAUUUAG	chr17:60139793-60140062(-)$1	269	154	193	16.2958
augugugguguguguccauguguccauguucauguaugu	chr8:676553-676830(-)$1	277	9	48	16.0112
ucuagguuguacgugugugugACCAUACUUAUGUGAACA	chr20:47254457-47254769(-)$1	312	146	185	13.7239
CAAAUUUUAAGAUUUUACAACUCUGUUAGAAAAUCAAAA	chr18:8760597-8760855(+)$1	258	183	222	11.6173
uggugugugugugGCUGGGGUUGGCCGGGUGCUGCUUUC	chr7:158714239-158714555(+)$1	316	150	189	13.8150
GUAGGAAGUGUGUGGUUGACACGUGUCAGGUGACGUUGU	chr16:68001095-68001375(-)$1	280	147	186	12.5146
UGCCAGAAUGAGUACCUGUGUGUGCGCCUUUGUGUCUGU	chr1:27855063-27855426(+)$1	363	113	152	14.4229
GACAUGUACAUUUGUGCCCAGGGAUGUGUACAUGUAUAU	chr11:64853276-64853568(+)$1	292	211	250	13.3251
uugguuuuucaguuauagcucuguugcuugauuguauga	chrX:77036371-77036638(-)$1	267	84	123	12.3522
ACAUAUGAGAAUGUAUGAGCUGCugugugcaugagggug	chr16:11570138-11570491(-)$1	353	81	120	12.7479
GUGAUGGAGAGCCAGGUUCAUCUUUGAAAUCUAGGGCUC	chr3:160219245-160219521(-)$1	276	123	162	13.0272
UGAAUACGCUGGUGACAUAUUGCUGUAUUCUUGGGCGUG	chr11:3405826-3406105(+)$1	279	198	237	15.6351
ugcaugugagcaggcaagugugugagcuggcgugugagc	chr10:134568540-134568817(+)$1	277	51	90	12.3839
AGGGGAAAAUCCAGGCUUUUUCUUUUAAAACCUGUUUUC	chr7:106693888-106694169(+)$1	281	233	272	13.1745
UUGGGAGGGUAUUGUGAGGGGAUACUUUUUUGGGUGCUU	chr18:2686538-2686808(+)$1	270	202	241	15.1613
UGGCUGUGCAUACUUGUAUGUGAAUACUUAGAGUAAGAG	chr12:124946533-124946791(-)$1	258	140	179	13.4172
AAGUUUGGAACUGUCAGUUUUACUGCUGUGAGUCUCAAA	chr2:169743344-169743645(-)$1	301	177	216	13.2621
AGUUUUAAAUAUUCAGACUUGGUAAAGUAGAAUAAGAAC	chr17:75089245-75089536(+)$1	291	17	56	17.0746
auguguguuagguguaucuguguacagauuuguguaacc	chr21:44488756-44489053(-)$1	297	144	183	12.7120
UGUAAAAUUUUGUUUACAGAUUAUUCUGAAACAUGAUUA	chr4:103724051-103724357(-)$1	306	219	258	12.8316
UGGUGUGCCCUGUGUGUGUGUGUGUACAAAUACAUGUGU	chr20:36146238-36146518(-)$1	280	113	152	16.8177

#DB
((.((.((((((((((.((((...)))).)))))...))	chr19:807356-807625(+)$1	1	42	81	12.8660
((((((((((.(((((((((....))).))))))..)))	chr1:1158429-1158669(-)$1	1	166	205	14.9632
(((..(((((((.....(((....)))....))))))).	chr20:45957794-45958072(-)$1	1	191	230	14.8158
.))).((((((((((.(((......))).)))...))))	chr3:9479077-9479385(+)$1	1	85	124	12.8450
(((.(..(((..(.(((((....))))).)..)))....	chr5:53387716-53388013(-)$1	1	184	223	12.2558
.(((..((((((..(((.((....)))))))))))..))	chr7:128233096-128233356(+)$1	1	46	85	12.6000
))))))((((((((((((((....)))))))))))))).	chr8:103408733-103409016(-)$1	1	129	168	15.1156
((((..(((((((.((((((....)))))).))))))))	chr17:78607812-78608099(+)$1	1	206	245	13.6669
((.(((.((.(((((.((((....)))).))))).)).)	chr8:91512760-91513037(+)$1	1	11	50	15.4973
(((..(((((((....((((....))))....)))))))	chr11:71195725-71195983(+)$1	1	124	163	16.8458
(((..((((((((((.((((....)))).))))....))	chr3:176813958-176814235(-)$1	1	196	235	14.7975
((.((((((((.(((.((((....))))...))).))))	chr22:21998371-21998670(+)$1	1	132	171	15.0142
((.(....(((((((.((((....)))))))))))....	chr7:120835866-120836115(+)$1	1	71	110	16.2183
(((((((((((.(((..(((....)))))).)).))).)	chr11:65196773-65196979(+)$1	1	78	117	13.0634
(((((((((((..(((((((....)).)))..))..)))	chr22:20070823-20071065(+)$1	1	114	153	13.2078
(.(((..((((((((..(((....))).))))))))..)	chr4:3101831-3102068(+)$1	1	151	190	12.5225
(((((((((((((((.((((....)))).))).))))))	chr3:15140240-15140495(-)$1	1	111	150	15.4685
.((((((.(((((....(((...)))...)))))...))	chr3:160232743-160232968(-)$1	1	17	56	11.7696
(((((((((..((((.(((......))).))))..))))	chr17:79048460-79048745(+)$1	1	8	47	13.9451
.((((((((((((((.((((....)))))))))))))).	chr7:1478857-1479094(-)$1	1	52	91	16.7660
((....(.(((((((.((((....)))).))))))).))	chr7:141467555-141467830(+)$1	1	76	115	17.0229
(((.(((..(((.((((((((...))).)))))..).))	chr1:21932083-21932315(-)$1	1	122	161	11.4750
(((((((((((..(((((((....)))))))........	chr8:676409-676701(-)$1	1	235	274	13.2258
.((((((((((((((..(((....)))..))))))))).	chr9:125971984-125972265(-)$1	1	91	130	15.4604
)))))((((.((((..((((....))))..))))..)))	chr18:8723311-8723634(+)$1	1	206	245	13.6316
.((((((((.(((.(.((((....)))).)))).)))))	chr21:22627127-22627389(+)$1	1	66	105	13.9245
((((.((.((((((((.(((....)))))))).))))))	chr19:46334374-46334668(-)$1	1	12	51	12.6035
((..(((...((((.(.(((....))).).))))...))	chr20:48311231-48311522(-)$1	1	163	202	14.0913
.((((((((.(((((.((((....)))).))))).).))	chr20:36146318-36146578(-)$1	1	173	212	16.8177
(((..(((((((((..((((....))))....)))))..	chr19:18827732-18828043(+)$1	1	228	267	13.9431
)).)))(((((((..((((.....))))....)))))))	chr7:91576376-91576647(+)$1	1	208	247	13.0079
((((((..(((..(((((((....))))))))))..)))	chr7:40094668-40094954(+)$1	1	162	201	14.5851
((((((((((..(((.((((....)))).))))))))..	chr8:99669341-99669597(-)$1	1	66	105	14.4303
.((((...(((((((.((((....)))).))))))))))	chr17:60139793-60140062(-)$1	1	154	193	16.2958
(((((..(((((((..((((....))))..)))))))..	chr8:676553-676830(-)$1	1	9	48	16.0112
)))).(((.((((((.((((....)))).))))))))).	chr20:47254457-47254769(-)$1	1	146	185	13.7239
.(((((((..((((((..(((...)))..))))))))))	chr18:8760597-8760855(+)$1	1	183	222	11.6173
(((...(((.(((.((((......)))).))))))...)	chr7:158714239-158714555(+)$1	1	150	189	13.8150
.((((.(((((..(.(((((....))))).).))))).)	chr16:68001095-68001375(-)$1	1	147	186	12.5146
.((((.(...(((((..(((....)))....))).))..	chr1:27855063-27855426(+)$1	1	113	152	14.4229
)(((((((((..(((((.((....)).))))))))))))	chr11:64853276-64853568(+)$1	1	211	250	13.3251
..((((...((((((.(((......)))))))))...))	chrX:77036371-77036638(-)$1	1	84	123	12.3522
((((((....((((((..((....))))))))....)))	chr16:11570138-11570491(-)$1	1	81	120	12.7479
((((((((((((((((((((....)).)))))..)))))	chr3:160219245-160219521(-)$1	1	123	162	13.0272
((.(((((((.(.((.((((....)))))).).))))))	chr11:3405826-3406105(+)$1	1	198	237	15.6351
(((.(((..(((.((.(((......))).)).)))..))	chr10:134568540-134568817(+)$1	1	51	90	12.3839
(.(((((((..((((.((((......)))))))))))))	chr7:106693888-106694169(+)$1	1	233	272	13.1745
..(.(((((((((..(((((....)))))...)))))))	chr18:2686538-2686808(+)$1	1	202	241	15.1613
(((((.(...(((((((((....))))...)))))).))	chr12:124946533-124946791(-)$1	1	140	179	13.4172
.(((((((.(((..((((......))))..))).)))))	chr2:169743344-169743645(-)$1	1	177	216	13.2621
((((((...(((((..((((....)))).))))))))))	chr17:75089245-75089536(+)$1	1	17	56	17.0746
..(((.((((.(...(((((....)))))...).)))))	chr21:44488756-44489053(-)$1	1	144	183	12.7120
)))).((((.(((((.((((....))))))))).)))).	chr4:103724051-103724357(-)$1	1	219	258	12.8316
.((((((((.(((((.((((....)))).))))).).))	chr20:36146238-36146518(-)$1	1	113	152	16.8177

#PSSM
= : 0.12	! : 0.11	g : 0.11	e : 0.11	f : 0.09	d : 0.09	c : 0.09	: : 0.05	b : 0.03	+ : 0.03	[ : 0.03	2 : 0.01	% : 0.01	A : 0.01	a : 0.01	# : 0.01	
g : 0.18	d : 0.16	= : 0.12	e : 0.12	f : 0.11	c : 0.11	b : 0.03	[ : 0.03	! : 0.03	h : 0.01	i : 0.01	# : 0.01	
g : 0.20	d : 0.14	= : 0.12	c : 0.11	e : 0.11	[ : 0.09	f : 0.09	# : 0.01	h : 0.01	! : 0.01	] : 0.01	i : 0.01	a : 0.01	
g : 0.22	= : 0.12	c : 0.11	d : 0.11	! : 0.09	[ : 0.07	e : 0.07	f : 0.05	h : 0.03	b : 0.01	a : 0.01	# : 0.01	" : 0.01	i : 0.01	
g : 0.16	= : 0.12	c : 0.12	! : 0.11	d : 0.09	e : 0.07	: : 0.05	i : 0.05	h : 0.03	# : 0.03	f : 0.03	b : 0.01	a : 0.01	[ : 0.01	" : 0.01	
g : 0.22	= : 0.12	c : 0.11	[ : 0.09	! : 0.09	d : 0.07	i : 0.05	f : 0.03	h : 0.03	# : 0.03	e : 0.03	" : 0.03	a : 0.01	b : 0.01	
g : 0.20	= : 0.11	c : 0.11	! : 0.07	f : 0.07	i : 0.07	d : 0.07	e : 0.05	a : 0.05	" : 0.05	h : 0.03	# : 0.03	[ : 0.01	b : 0.01	
g : 0.22	= : 0.11	" : 0.11	c : 0.07	i : 0.07	d : 0.07	e : 0.05	f : 0.05	h : 0.05	[ : 0.05	! : 0.05	# : 0.03	b : 0.01	
g : 0.20	= : 0.11	c : 0.09	" : 0.09	e : 0.07	i : 0.07	d : 0.07	f : 0.05	h : 0.05	! : 0.05	a : 0.03	[ : 0.03	b : 0.01	# : 0.01	
g : 0.18	[ : 0.12	e : 0.11	= : 0.09	c : 0.09	f : 0.09	i : 0.07	! : 0.05	" : 0.05	h : 0.03	b : 0.03	# : 0.01	d : 0.01	
e : 0.18	g : 0.16	f : 0.12	c : 0.11	! : 0.09	= : 0.07	[ : 0.05	b : 0.05	i : 0.05	h : 0.03	d : 0.03	
e : 0.18	g : 0.16	f : 0.12	! : 0.12	d : 0.09	c : 0.07	a : 0.05	i : 0.05	= : 0.03	[ : 0.03	h : 0.01	b : 0.01	
e : 0.20	c : 0.14	! : 0.11	g : 0.11	f : 0.09	d : 0.09	[ : 0.05	i : 0.05	= : 0.03	$ : 0.01	a : 0.01	# : 0.01	h : 0.01	" : 0.01	
e : 0.22	c : 0.11	g : 0.11	f : 0.09	d : 0.09	[ : 0.07	! : 0.07	b : 0.05	= : 0.03	# : 0.03	$ : 0.01	h : 0.01	i : 0.01	a : 0.01	" : 0.01	
e : 0.20	c : 0.12	f : 0.11	! : 0.11	d : 0.09	g : 0.09	b : 0.05	= : 0.03	# : 0.03	[ : 0.03	$ : 0.01	h : 0.01	i : 0.01	a : 0.01	" : 0.01	
[ : 0.37	e : 0.16	! : 0.14	f : 0.07	d : 0.07	c : 0.03	# : 0.03	g : 0.03	$ : 0.01	= : 0.01	a : 0.01	
d : 0.46	e : 0.12	c : 0.11	! : 0.11	[ : 0.05	f : 0.03	g : 0.03	$ : 0.01	= : 0.01	# : 0.01	
d : 0.48	c : 0.25	e : 0.11	[ : 0.03	g : 0.03	! : 0.03	= : 0.01	f : 0.01	
d : 0.44	c : 0.27	b : 0.09	e : 0.07	g : 0.03	o : 0.03	= : 0.01	f : 0.01	
d : 0.40	c : 0.20	o : 0.11	b : 0.09	e : 0.05	m : 0.03	g : 0.03	= : 0.01	f : 0.01	n : 0.01	
m : 0.77	o : 0.12	c : 0.03	d : 0.01	l : 0.01	n : 0.01	
m : 0.77	o : 0.12	l : 0.07	n : 0.01	
m : 0.77	o : 0.12	l : 0.07	n : 0.01	
m : 0.74	o : 0.12	l : 0.05	e : 0.01	c : 0.01	n : 0.01	d : 0.01	
d : 0.46	c : 0.20	o : 0.09	b : 0.09	e : 0.07	g : 0.03	= : 0.01	f : 0.01	
d : 0.46	c : 0.27	b : 0.09	e : 0.07	g : 0.03	= : 0.01	f : 0.01	o : 0.01	
d : 0.48	c : 0.27	e : 0.07	] : 0.05	f : 0.03	g : 0.03	= : 0.01	3 : 0.01	
d : 0.46	c : 0.12	e : 0.12	] : 0.07	4 : 0.03	f : 0.03	3 : 0.03	g : 0.03	2 : 0.03	= : 0.01	
] : 0.31	e : 0.14	4 : 0.09	2 : 0.09	f : 0.07	c : 0.05	3 : 0.05	g : 0.05	= : 0.03	h : 0.01	a : 0.01	b : 0.01	d : 0.01	
e : 0.20	f : 0.12	c : 0.11	4 : 0.09	g : 0.09	3 : 0.07	d : 0.05	2 : 0.05	a : 0.03	= : 0.03	] : 0.03	b : 0.03	h : 0.01	i : 0.01	
e : 0.22	f : 0.11	c : 0.11	g : 0.11	4 : 0.09	d : 0.09	] : 0.05	3 : 0.05	2 : 0.03	= : 0.03	h : 0.01	i : 0.01	a : 0.01	b : 0.01	
e : 0.22	c : 0.16	f : 0.11	g : 0.11	d : 0.09	4 : 0.05	2 : 0.03	= : 0.03	] : 0.03	3 : 0.03	b : 0.01	h : 0.01	> : 0.01	i : 0.01	a : 0.01	
e : 0.22	g : 0.14	c : 0.14	f : 0.09	d : 0.09	] : 0.05	i : 0.05	= : 0.03	b : 0.03	3 : 0.01	h : 0.01	> : 0.01	4 : 0.01	2 : 0.01	a : 0.01	
e : 0.18	g : 0.16	c : 0.12	f : 0.11	] : 0.09	2 : 0.05	i : 0.05	d : 0.05	= : 0.03	4 : 0.03	3 : 0.01	b : 0.01	h : 0.01	> : 0.01	
g : 0.22	2 : 0.11	3 : 0.09	c : 0.09	] : 0.09	f : 0.07	i : 0.07	e : 0.07	= : 0.03	4 : 0.03	h : 0.03	d : 0.03	> : 0.01	
g : 0.24	2 : 0.11	3 : 0.09	4 : 0.07	a : 0.07	i : 0.07	= : 0.05	h : 0.05	c : 0.05	e : 0.05	b : 0.03	d : 0.03	f : 0.01	> : 0.01	
g : 0.24	3 : 0.09	= : 0.09	] : 0.09	i : 0.07	d : 0.07	4 : 0.05	2 : 0.05	b : 0.05	e : 0.05	h : 0.03	c : 0.03	f : 0.01	> : 0.01	
g : 0.25	= : 0.09	d : 0.09	c : 0.07	i : 0.07	] : 0.05	f : 0.05	e : 0.03	4 : 0.03	h : 0.03	2 : 0.03	b : 0.03	3 : 0.03	a : 0.01	> : 0.01	9 : 0.01	5 : 0.01	
g : 0.24	c : 0.12	f : 0.07	d : 0.07	e : 0.05	= : 0.05	: : 0.05	i : 0.05	3 : 0.03	4 : 0.03	h : 0.03	a : 0.01	7 : 0.01	b : 0.01	> : 0.01	] : 0.01	9 : 0.01	2 : 0.01	5 : 0.01	

#score	760.7893227383481
#seq	54
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_CDS_m2_run1.txt

#BEAR
eeeeemmmmeeeee	chr22:36690062-36690303(-)$1	241	177	191	11.0807
eeeeemmmmeeeee	chr2:54856638-54856894(+)$1	256	167	181	11.0807
eeeeeooooooeee	chr2:232325278-232325512(-)$1	234	5	19	7.9202
!ddddmmmmdddd]	chr9:116930028-116930252(+)$1	224	151	165	7.3655
eeeeemmmmeeeee	chr20:31022794-31023039(+)$1	245	51	65	11.0807
fddddmmmmdddd2	chr16:2813911-2814152(+)$1	241	140	154	6.9616
"ddddmmmmdddd4	chr2:27606290-27606569(-)$1	279	53	67	7.1813
[eeeeellleeeee	chr1:19484306-19484553(-)$1	247	209	223	8.6134
eeeeemmmmeeeee	chr10:101603535-101603757(+)$1	222	133	147	11.0807
eeeeemmmmeeeee	chr2:54874193-54874494(+)$1	301	12	26	11.0807
eeeeemmmmeeeee	chr11:130011740-130012027(+)$1	287	213	227	11.0807
eeeeemmmmeeeee	chr20:60913185-60913422(-)$1	237	171	185	11.0807
eeeeemmmmeeeee	chr2:232326431-232326673(-)$1	242	217	231	11.0807
eeeeemmmmeeeee	chr20:60905444-60905667(-)$1	223	3	17	11.0807
[ddddmmmmddddd	chr16:28847471-28847734(+)$1	263	134	148	7.4386
eeeeemmmmeeeee	chr3:48456292-48456542(-)$1	250	166	180	11.0807
eeeeemmmmeeeee	chr20:60913433-60913664(-)$1	231	116	130	11.0807
eeeeeooooooeee	chr2:232319842-232320079(-)$1	237	198	212	7.9202
[eeeeellleeeee	chr9:117014773-117015022(+)$1	249	135	149	8.6134
eeeeemmmmeeeee	chr6:144745101-144745314(+)$1	213	72	86	11.0807
[ddddmmmmdddd]	chr1:234565838-234566131(-)$1	293	143	157	7.4202
=====mmmm=====	chr1:19474425-19474680(-)$1	255	26	40	6.5015
eeebbmmmmbb]ee	chr14:21546492-21546748(+)$1	256	2	16	7.2418
eeeeemmmmeeeee	chr6:144812014-144812262(+)$1	248	73	87	11.0807
[ddddmmmmddddc	chr3:184044922-184045214(+)$1	292	182	196	7.3383
eeeeemmmmeeeee	chr17:80193762-80194054(+)$1	292	230	244	11.0807
eeeeemmmmeeeee	chr2:232326205-232326473(-)$1	268	17	31	11.0807
eeeeemmmmeeeee	chr19:57325487-57325717(-)$1	230	3	17	11.0807
eeeeeooooooeee	chr2:102445918-102446157(+)$1	239	158	172	7.9202
eeeeemmmmeeeee	chr17:1585083-1585368(-)$1	285	217	231	11.0807
eeeeemmmmeeeee	chr17:75484225-75484478(+)$1	253	186	200	11.0807
[ddddmmmmddddb	chr3:49722141-49722410(-)$1	269	59	73	7.0557
eeeeemmmmeeeee	chr20:60913524-60913760(-)$1	236	212	226	11.0807
eeeeemmmmeeeee	chr12:57567503-57567741(+)$1	238	140	154	11.0807
ieeeeellleeeee	chr14:102548629-102548883(-)$1	254	38	52	8.4759
eeeeemmmmeeeee	chr11:67810715-67811052(+)$1	337	164	178	11.0807
eeeeemmmmeeeee	chr9:117050890-117051131(+)$1	241	124	138	11.0807
[eeeeellleeeee	chr12:112756954-112757265(-)$1	311	115	129	8.6134
eeeeemmmmeeeee	chr1:19452997-19453249(-)$1	252	132	146	11.0807
eeeeemmmmeeeee	chr7:148711901-148712129(-)$1	228	68	82	11.0807
eeeeemmmmeeeee	chr21:46915219-46915445(+)$1	226	2	16	11.0807
eeeeemmmmeeeee	chr16:30087575-30087857(+)$1	282	82	96	11.0807
eeeeemmmmeeeee	chr20:60913049-60913287(-)$1	238	36	50	11.0807
eeeeemmmmeeeee	chr2:11755225-11755468(+)$1	243	97	111	11.0807

#otherMatches

#Seq PSSM
GCCAGGACCCUGGC	chr22:36690062-36690303(-)$1	241	177	191	11.0807
CCAGGACACUCUGG	chr2:54856638-54856894(+)$1	256	167	181	11.0807
AGCCAAGAACGUGG	chr2:232325278-232325512(-)$1	234	5	19	7.9202
CGCUGUCCGCAGCC	chr9:116930028-116930252(+)$1	224	151	165	7.3655
GCAGCCUCAGUUGC	chr20:31022794-31023039(+)$1	245	51	65	11.0807
GAUGCUACUGCAUC	chr16:2813911-2814152(+)$1	241	140	154	6.9616
GGAACGCAUGUUCA	chr2:27606290-27606569(-)$1	279	53	67	7.1813
CGCCAACAUUUGGC	chr1:19484306-19484553(-)$1	247	209	223	8.6134
CUGGAAAAAUCCAG	chr10:101603535-101603757(+)$1	222	133	147	11.0807
ACUCCUUAAGGGGU	chr2:54874193-54874494(+)$1	301	12	26	11.0807
CCACGGGAUCGUGG	chr11:130011740-130012027(+)$1	287	213	227	11.0807
AGGCCCGUGGGCCU	chr20:60913185-60913422(-)$1	237	171	185	11.0807
UGGCAAGAAUGCCA	chr2:232326431-232326673(-)$1	242	217	231	11.0807
GUGGUCUUCACCAC	chr20:60905444-60905667(-)$1	223	3	17	11.0807
UGUCCCACAGGGCG	chr16:28847471-28847734(+)$1	263	134	148	7.4386
GGACCCCUGGGUCC	chr3:48456292-48456542(-)$1	250	166	180	11.0807
GGGUUCUACGGCCC	chr20:60913433-60913664(-)$1	231	116	130	11.0807
CUUUUCCAUUUGAA	chr2:232319842-232320079(-)$1	237	198	212	7.9202
GGACCCAAGGGGUC	chr9:117014773-117015022(+)$1	249	135	149	8.6134
UGACUUUGGGGUUA	chr6:144745101-144745314(+)$1	213	72	86	11.0807
GUGUGAGGCCAUAG	chr1:234565838-234566131(-)$1	293	143	157	7.4202
GGUUAGUGAUAACC	chr1:19474425-19474680(-)$1	255	26	40	6.5015
GGUGGAACCCCAAC	chr14:21546492-21546748(+)$1	256	2	16	7.2418
AAAGUUCCAGCUUU	chr6:144812014-144812262(+)$1	248	73	87	11.0807
CGCGGACACCUGCU	chr3:184044922-184045214(+)$1	292	182	196	7.3383
GCCUUCCCCAAGGC	chr17:80193762-80194054(+)$1	292	230	244	11.0807
UGGCAAGAAUGCCA	chr2:232326205-232326473(-)$1	268	17	31	11.0807
gcugcagcagcagc	chr19:57325487-57325717(-)$1	230	3	17	11.0807
GUGAUCUCAUAAUU	chr2:102445918-102446157(+)$1	239	158	172	7.9202
UGGUUCUAUGACCA	chr17:1585083-1585368(-)$1	285	217	231	11.0807
CCUCCAGGGGGAGG	chr17:75484225-75484478(+)$1	253	186	200	11.0807
AGUCACAAAUGACC	chr3:49722141-49722410(-)$1	269	59	73	7.0557
GGGUUCUACGGCCC	chr20:60913524-60913760(-)$1	236	212	226	11.0807
UGGCCUGCAGGCCA	chr12:57567503-57567741(+)$1	238	140	154	11.0807
AUUUCACAAUGAAA	chr14:102548629-102548883(-)$1	254	38	52	8.4759
AGAGCGCCUGCUCU	chr11:67810715-67811052(+)$1	337	164	178	11.0807
CCGGGAGACCCUGG	chr9:117050890-117051131(+)$1	241	124	138	11.0807
CUCAAUGGAAUUGA	chr12:112756954-112757265(-)$1	311	115	129	8.6134
AGCUCUACUGAGCU	chr1:19452997-19453249(-)$1	252	132	146	11.0807
CAAAGAGAACUUUG	chr7:148711901-148712129(-)$1	228	68	82	11.0807
CUGGUAAUCAUCAG	chr21:46915219-46915445(+)$1	226	2	16	11.0807
GGGGCGGCGGCCCC	chr16:30087575-30087857(+)$1	282	82	96	11.0807
AGGCCCGUGGGCCU	chr20:60913049-60913287(-)$1	238	36	50	11.0807
CCCUUGGAGAAGGG	chr2:11755225-11755468(+)$1	243	97	111	11.0807

#DB
(((((....)))))	chr22:36690062-36690303(-)$1	1	177	191	11.0807
(((((....)))))	chr2:54856638-54856894(+)$1	1	167	181	11.0807
(((((......)))	chr2:232325278-232325512(-)$1	1	5	19	7.9202
.((((....)))).	chr9:116930028-116930252(+)$1	1	151	165	7.3655
(((((....)))))	chr20:31022794-31023039(+)$1	1	51	65	11.0807
(((((....)))).	chr16:2813911-2814152(+)$1	1	140	154	6.9616
.((((....)))).	chr2:27606290-27606569(-)$1	1	53	67	7.1813
.(((((...)))))	chr1:19484306-19484553(-)$1	1	209	223	8.6134
(((((....)))))	chr10:101603535-101603757(+)$1	1	133	147	11.0807
(((((....)))))	chr2:54874193-54874494(+)$1	1	12	26	11.0807
(((((....)))))	chr11:130011740-130012027(+)$1	1	213	227	11.0807
(((((....)))))	chr20:60913185-60913422(-)$1	1	171	185	11.0807
(((((....)))))	chr2:232326431-232326673(-)$1	1	217	231	11.0807
(((((....)))))	chr20:60905444-60905667(-)$1	1	3	17	11.0807
.((((....)))))	chr16:28847471-28847734(+)$1	1	134	148	7.4386
(((((....)))))	chr3:48456292-48456542(-)$1	1	166	180	11.0807
(((((....)))))	chr20:60913433-60913664(-)$1	1	116	130	11.0807
(((((......)))	chr2:232319842-232320079(-)$1	1	198	212	7.9202
.(((((...)))))	chr9:117014773-117015022(+)$1	1	135	149	8.6134
(((((....)))))	chr6:144745101-144745314(+)$1	1	72	86	11.0807
.((((....)))).	chr1:234565838-234566131(-)$1	1	143	157	7.4202
(((((....)))))	chr1:19474425-19474680(-)$1	1	26	40	6.5015
(((((....)).))	chr14:21546492-21546748(+)$1	1	2	16	7.2418
(((((....)))))	chr6:144812014-144812262(+)$1	1	73	87	11.0807
.((((....)))))	chr3:184044922-184045214(+)$1	1	182	196	7.3383
(((((....)))))	chr17:80193762-80194054(+)$1	1	230	244	11.0807
(((((....)))))	chr2:232326205-232326473(-)$1	1	17	31	11.0807
(((((....)))))	chr19:57325487-57325717(-)$1	1	3	17	11.0807
(((((......)))	chr2:102445918-102446157(+)$1	1	158	172	7.9202
(((((....)))))	chr17:1585083-1585368(-)$1	1	217	231	11.0807
(((((....)))))	chr17:75484225-75484478(+)$1	1	186	200	11.0807
.((((....)))))	chr3:49722141-49722410(-)$1	1	59	73	7.0557
(((((....)))))	chr20:60913524-60913760(-)$1	1	212	226	11.0807
(((((....)))))	chr12:57567503-57567741(+)$1	1	140	154	11.0807
)(((((...)))))	chr14:102548629-102548883(-)$1	1	38	52	8.4759
(((((....)))))	chr11:67810715-67811052(+)$1	1	164	178	11.0807
(((((....)))))	chr9:117050890-117051131(+)$1	1	124	138	11.0807
.(((((...)))))	chr12:112756954-112757265(-)$1	1	115	129	8.6134
(((((....)))))	chr1:19452997-19453249(-)$1	1	132	146	11.0807
(((((....)))))	chr7:148711901-148712129(-)$1	1	68	82	11.0807
(((((....)))))	chr21:46915219-46915445(+)$1	1	2	16	11.0807
(((((....)))))	chr16:30087575-30087857(+)$1	1	82	96	11.0807
(((((....)))))	chr20:60913049-60913287(-)$1	1	36	50	11.0807
(((((....)))))	chr2:11755225-11755468(+)$1	1	97	111	11.0807

#PSSM
e : 0.72	[ : 0.15	! : 0.02	f : 0.02	" : 0.02	= : 0.02	i : 0.02	
e : 0.81	d : 0.15	= : 0.02	
e : 0.81	d : 0.15	= : 0.02	
e : 0.79	d : 0.15	= : 0.02	b : 0.02	
e : 0.79	d : 0.15	= : 0.02	b : 0.02	
m : 0.84	e : 0.09	o : 0.06	
m : 0.84	l : 0.09	o : 0.06	
m : 0.84	l : 0.09	o : 0.06	
m : 0.84	l : 0.09	o : 0.06	
e : 0.72	d : 0.15	o : 0.06	= : 0.02	b : 0.02	
e : 0.72	d : 0.15	o : 0.06	= : 0.02	b : 0.02	
e : 0.79	d : 0.15	= : 0.02	] : 0.02	
e : 0.81	d : 0.15	= : 0.02	
e : 0.81	] : 0.04	2 : 0.02	4 : 0.02	d : 0.02	= : 0.02	c : 0.02	b : 0.02	

#score	432.8424782805633
#seq	44
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_transcript_m2_run1.txt

#BEAR
hhhhhhhh"""bbmmmmbb4444hhhhhh	chr11:85374933-85375190(-)$1	257	195	224	12.3042
ggg"""ccc!!ccclllccc22cccgggg	chr12:123746174-123746451(-)$1	277	245	274	12.0628
ggggg[dddd[ccclllccc22ddddggg	chr14:24711422-24711770(-)$1	348	223	252	10.8788
iiiiiiiii"""ammmma333iiiiiiii	chr2:241439341-241439594(-)$1	253	25	54	13.5728
accc[dddd[cccmmmmccc22dddd]cc	chr9:116982019-116982225(+)$1	206	136	165	13.0166
ddd!!a!!a[cccmmmmccc]a22a22dd	chr12:19592964-19593263(+)$1	299	122	151	12.4193
bbeeeee####ccclllccc333eeeee]	chr17:48629248-48629547(+)$1	299	141	170	11.4171
:iiiiiiiiicccmmmmccc]iiiiiiii	chr12:46123518-46123817(+)$1	299	265	294	13.1409
========"""ccclllccc333======	chr20:61457463-61457689(+)$1	226	50	79	13.5802
dddd[eeeee[bbmmmmbb333eeeee]d	chr6:43111336-43111625(+)$1	289	68	97	11.4223
=========!!bbmmmmbb]=========	chr19:7707217-7707503(+)$1	286	256	285	13.5645
hhhhhhhh!!cccmmmmccchhhhhhhhi	chr2:235903885-235904136(+)$1	251	157	186	11.5824
:ggggggg[ddddmmmmdddd]ggggggg	chr6:52132559-52132815(-)$1	256	198	227	11.7957
:ffffff####bbmmmmbb4444ffffff	chr20:3202458-3202663(+)$1	205	74	103	11.9478
ccca[bb!!ddddmmmmdddd22bb]a]c	chr11:376334-376572(+)$1	238	132	161	11.4569
ggggg####ddddmmmmdddd22gggggg	chr2:233697463-233697810(+)$1	347	18	47	13.1756
!!ffffff!!cccmmmmccc22ffffff2	chr21:46914359-46914585(+)$1	226	193	222	13.4685
ggggggg[eeeeemmmmeeeee]gggggg	chr17:74324730-74324980(-)$1	250	216	245	11.0888
bb[ccc"""ddddmmmmdddd333ccc]b	chr19:39936343-39936641(+)$1	298	125	154	12.1275
iiiiiiccc[cccmmmmccc]ccc>>>>>	chr22:50192133-50192433(-)$1	300	43	72	12.0291
hhhh[dddd[cccmmmmccc22dddd]hh	chr11:71189335-71189617(+)$1	282	183	212	12.5530
eggggggg!!cccoooooocccggggggg	chr14:23235911-23236153(+)$1	242	73	102	10.9054
iiiiiiii!!cccmmmmccc22iiiiiii	chr22:43410884-43411214(-)$1	330	41	70	15.4237
ffffff####cccmmmmccc333ffffff	chr7:79083314-79083664(+)$1	350	5	34	14.2963
##gggggggddddmmmmdddd22gggggg	chr22:51017420-51017703(-)$1	283	107	136	12.4813
!!ccc[cccddddmmmmdddd]ccc]ccc	chr12:132528663-132529000(+)$1	337	241	270	11.6920
ccc[dddd[ddddmmmmdddd]dddd]cc	chr21:48055482-48055854(+)$1	372	205	234	10.9272
c[ccceeeeecccmmmmccc22eeeee22	chr2:232577413-232577629(+)$1	216	16	45	12.3522
ggggggg[a[cccmmmmccc22a]ggggg	chr4:10020763-10021116(-)$1	353	234	263	15.1650
"hhhhhhhh[cccmmmmccc]hhhhhhhh	chr16:22337129-22337424(+)$1	295	20	49	11.4232
ccc[dddd"""bbmmmmbb]dddd]ccc]	chrX:133931033-133931343(-)$1	310	67	96	11.7077
[ffffff"""cccmmmmccc22ffffff2	chr3:71247258-71247537(-)$1	279	96	125	13.7858
ggggggg[bb[bbmmmmbb]bb]gggggg	chr10:5932110-5932431(+)$1	321	153	182	11.7575
cccc[ccc!!ccclllccc4444ccc]cc	chr3:195695059-195695337(-)$1	278	82	111	12.0125
fffbb[a"""cccmmmmccca]bb]ffff	chr19:2810566-2810864(+)$1	298	189	218	12.5105
eeeggggggg[bbmmmmbb]ggggggg]e	chr2:46926353-46926623(+)$1	270	54	83	11.9948
ggggggg[cccbbmmmmbb]ccc]ggggg	chr3:171992058-171992320(+)$1	262	95	124	12.8145
fffff[a####bbmmmmbb4444a]ffff	chr9:94123790-94124071(-)$1	281	140	169	13.1455
[ccc"""ccc[bbmmmmbb]ccccccddd	chr6:170704477-170704809(+)$1	332	205	234	11.2366
ccc[ccc[cccbbmmmmbb]ccc22cccc	chr14:103570553-103570796(+)$1	243	155	184	11.6467
c!!ffffff[cccmmmmccc22ffffff2	chr8:145742986-145743304(-)$1	318	266	295	12.8268
ccc[ccc!!ddddmmmmdddd4444cccc	chr9:117002401-117002642(+)$1	241	80	109	12.3872
[eeeee"""ddddmmmmdddd333eeeee	chr17:56081209-56081463(-)$1	254	115	144	12.2280
ddddd[ccc!!bbmmmmbb22ccc]dddd	chr8:145979001-145979260(-)$1	259	204	233	11.1231
biiiiiiiii[bbmmmmbbiiiiiiiii2	chr11:61036293-61036560(-)$1	267	136	165	12.4725
eeeee[ddddcccmmmmccc]dddd]eee	chr19:39195483-39195731(+)$1	248	150	179	11.2170
cc!!bb####cccmmmmccc4444bb22c	chr8:101321915-101322277(-)$1	362	305	334	13.0050
e[dddd####cccmmmmccc333dddd]e	chr16:722159-722423(+)$1	264	84	113	13.8444
:ggggggg!!cccmmmmccc]ggggggg:	chr22:29694762-29694991(+)$1	229	188	217	12.6838
ddffffff!!cccmmmmccc22ffffff]	chr3:52324436-52324686(+)$1	250	86	115	13.2059
eee"""gggggggmmmmggggggg]eeee	chr16:684617-684892(-)$1	275	193	222	10.6077
[eeeee"""ddddmmmmdddd333eeeee	chr17:56081177-56081399(-)$1	222	51	80	12.2280
ff[dddd[bbcccmmmmccc333bb]ddd	chr20:42086971-42087185(+)$1	214	102	131	12.0558
ccc[eeeee[cccmmmmccc]eeeee]cc	chr11:597298-597545(+)$1	247	110	139	12.4967
cggggggg!!cccmmmmccc333gggggg	chr16:84215706-84216021(-)$1	315	45	74	15.9480

#otherMatches

#Seq PSSM
CCGGUGGGAAAGCAGAAGCAGGACCUGCU	chr11:85374933-85375190(-)$1	257	195	224	12.3042
AACCCUUGUUUUCAAAAUGGUUACAGUUU	chr12:123746174-123746451(-)$1	277	245	274	12.0628
CCGCCGACCAUGGCUACGCCCCUGGUGGC	chr14:24711422-24711770(-)$1	348	223	252	10.8788
CCUGUGGUGACCCUGGUGCUGUGCCGCAG	chr2:241439341-241439594(-)$1	253	25	54	13.5728
GAGAUUCUGAGUGAACACACAGCAGAUUU	chr9:116982019-116982225(+)$1	206	136	165	13.0166
ggggacggcaaggagggccuggaggagcc	chr12:19592964-19593263(+)$1	299	122	151	12.4193
CCUGUAUGAGGCCUCACAGGAGAGUGCGU	chr17:48629248-48629547(+)$1	299	141	170	11.4171
CGGGGUCCCGGCUGACAAGUGCGGGGCUU	chr12:46123518-46123817(+)$1	299	265	294	13.1409
AGGUGCAGCCCCAGCCUCUGCAUCUGUGC	chr20:61457463-61457689(+)$1	226	50	79	13.5802
GCGCCCUCCCGCGGCCACGGAGGGGAGAG	chr6:43111336-43111625(+)$1	289	68	97	11.4223
GUAGCGGCCUUGGGAUCCCUGGCUGCUGC	chr19:7707217-7707503(+)$1	286	256	285	13.5645
GAGUGGGUUGCCAUACCUGGACCCGCUUU	chr2:235903885-235904136(+)$1	251	157	186	11.5824
AGUUgggggugcacgccuguaaucuuagc	chr6:52132559-52132815(-)$1	256	198	227	11.7957
CCUGCUUUCAGCCUGAUGGAUAUGAGCAG	chr20:3202458-3202663(+)$1	205	74	103	11.9478
GCCCACCGAGGCGGCCCCGCCCAGGAGCG	chr11:376334-376572(+)$1	238	132	161	11.4569
UUGACAGAAGCUUUCAAAAGUGAGUCAGA	chr2:233697463-233697810(+)$1	347	18	47	13.1756
GCGGCUGCUGAGCUUGUGCUGUGCGGCCC	chr21:46914359-46914585(+)$1	226	193	222	13.4685
AAAUUGAAGAAAguuuuuuuuuguugguu	chr17:74324730-74324980(-)$1	250	216	245	11.0888
GGGGUGGAGCGCAGGAUUGUGGGACGCGC	chr19:39936343-39936641(+)$1	298	125	154	12.1275
GGGGCUGAGACGCAUGUGCGGCUCCCUAA	chr22:50192133-50192433(-)$1	300	43	72	12.0291
AGUGCUCCAGUAGACACCUGUGUGGGAUG	chr11:71189335-71189617(+)$1	282	183	212	12.5530
CCGGGGCAGAGCACCGGGAUGCUGCCCUG	chr14:23235911-23236153(+)$1	242	73	102	10.9054
GCGGUCGCGGCUGGCGGCAGAAGCGGCCG	chr22:43410884-43411214(-)$1	330	41	70	15.4237
GCCGGGAAGGAGGGGAGCCUAGGCCCGGC	chr7:79083314-79083664(+)$1	350	5	34	14.2963
CUCCUUGGAUUUCUCCUGGAGCCUCCAGG	chr22:51017420-51017703(-)$1	283	107	136	12.4813
ACUUGUGCAGCCAUGUUUGGCUUGUUCAA	chr12:132528663-132529000(+)$1	337	241	270	11.6920
AUGGGCAGCUCAGAUGGCUGGACUGCACG	chr21:48055482-48055854(+)$1	372	205	234	10.9272
UUGCUCUGCCAGCAGGAGCUGAGGCAGUG	chr2:232577413-232577629(+)$1	216	16	45	12.3522
GGACCUGGACUGGAACCCUACUUGCAGGU	chr4:10020763-10021116(-)$1	353	234	263	15.1650
GCGUUGCUGGAGCGGGAGCUGCAGCGGCG	chr16:22337129-22337424(+)$1	295	20	49	11.4232
GUGCCCGCGGGCCCAUUGGAGUGGCCGCU	chrX:133931033-133931343(-)$1	310	67	96	11.7077
GUCUUCGGGAGGGGCGGUCCAACGGAGAG	chr3:71247258-71247537(-)$1	279	96	125	13.7858
cgggcccggcggcggcggcAGCGGGGUCC	chr10:5932110-5932431(+)$1	321	153	182	11.7575
GCUGCUGGCUCGUGUCACGUUCACCACCA	chr3:195695059-195695337(-)$1	278	82	111	12.0125
GGCCACGCCAGGUAGCCACCCUUGAGCCG	chr19:2810566-2810864(+)$1	298	189	218	12.5105
CGGCGGAGCUGGGGUCCCCGGGCUCCGUC	chr2:46926353-46926623(+)$1	270	54	83	11.9948
CUUGUUACCUUUGGACACAGGAGAUGGCA	chr3:171992058-171992320(+)$1	262	95	124	12.8145
CACCUGGAGGAGGAGAACCGAGGUGAGGU	chr9:94123790-94124071(-)$1	281	140	169	13.1455
GUCACUCUGCUGGGCCACCUGCAUGGCAC	chr6:170704477-170704809(+)$1	332	205	234	11.2366
UCCAUGGACGUCCAUAUGGUGCGGCCCGG	chr14:103570553-103570796(+)$1	243	155	184	11.6467
UGACGCGUUCCCUUUACAGGACGACGUGG	chr8:145742986-145743304(-)$1	318	266	295	12.8268
CUCUCUGCUUCCCCUCAGGGAUUCCCAGG	chr9:117002401-117002642(+)$1	241	80	109	12.3872
GGGCUCACUGGAUCCCAAUCCUUGGAGCU	chr17:56081209-56081463(-)$1	254	115	144	12.2280
UGGGAUGCUAAUCCUGGGAGCAGCCUCCC	chr8:145979001-145979260(-)$1	259	204	233	11.1231
CCUGGACAGUGCUGCCCAGACUGUUCAGC	chr11:61036293-61036560(-)$1	267	136	165	12.4725
UCGCCAUCCAGGACAUCUCCGUGGAAGGU	chr19:39195483-39195731(+)$1	248	150	179	11.2170
GAUUCGGAAGUCCGGUGGGAAAGGCGUCU	chr8:101321915-101322277(-)$1	362	305	334	13.0050
AUCCUCACAGUCACUCGUGAGAAGAGGCU	chr16:722159-722423(+)$1	264	84	113	13.8444
ACUCUAGAGUGGAUUGCUCUGUCUAGAGG	chr22:29694762-29694991(+)$1	229	188	217	12.6838
GCACCGGGCACUAUCCUUGGACCCUGGUG	chr3:52324436-52324686(+)$1	250	86	115	13.2059
CCCAGGCAACCUCUCUAGGGGUUGAGGGC	chr16:684617-684892(-)$1	275	193	222	10.6077
GGGCUCACUGGAUCCCAAUCCUUGGAGCU	chr17:56081177-56081399(-)$1	222	51	80	12.2280
UGCGGCGAGCGCGUGAUCGUAGAGCACGC	chr20:42086971-42087185(+)$1	214	102	131	12.0558
AGUGAGGAGGAGGUCUCCCUGCUCUUGGC	chr11:597298-597545(+)$1	247	110	139	12.4967
UCGGUGGCGAGCCACUUGGCAGAGCUGCU	chr16:84215706-84216021(-)$1	315	45	74	15.9480

#DB
((((((((...((....))....))))))	chr11:85374933-85375190(-)$1	1	195	224	12.3042
(((...(((..(((...)))..)))))))	chr12:123746174-123746451(-)$1	1	245	274	12.0628
(((((.((((.(((...)))..)))))))	chr14:24711422-24711770(-)$1	1	223	252	10.8788
(((((((((...(....)...))))))))	chr2:241439341-241439594(-)$1	1	25	54	13.5728
)(((.((((.(((....)))..)))).))	chr9:116982019-116982225(+)$1	1	136	165	13.0166
(((..(..(.(((....))).)..)..))	chr12:19592964-19593263(+)$1	1	122	151	12.4193
(((((((....(((...)))...))))).	chr17:48629248-48629547(+)$1	1	141	170	11.4171
.((((((((((((....))).))))))))	chr12:46123518-46123817(+)$1	1	265	294	13.1409
((((((((...(((...)))...))))))	chr20:61457463-61457689(+)$1	1	50	79	13.5802
((((.(((((.((....))...))))).)	chr6:43111336-43111625(+)$1	1	68	97	11.4223
(((((((((..((....)).)))))))))	chr19:7707217-7707503(+)$1	1	256	285	13.5645
((((((((..(((....))))))))))))	chr2:235903885-235904136(+)$1	1	157	186	11.5824
.(((((((.((((....)))).)))))))	chr6:52132559-52132815(-)$1	1	198	227	11.7957
.((((((....((....))....))))))	chr20:3202458-3202663(+)$1	1	74	103	11.9478
((((.((..((((....))))..)).).)	chr11:376334-376572(+)$1	1	132	161	11.4569
(((((....((((....))))..))))))	chr2:233697463-233697810(+)$1	1	18	47	13.1756
..((((((..(((....)))..)))))).	chr21:46914359-46914585(+)$1	1	193	222	13.4685
(((((((.(((((....))))).))))))	chr17:74324730-74324980(-)$1	1	216	245	11.0888
((.(((...((((....))))...))).)	chr19:39936343-39936641(+)$1	1	125	154	12.1275
(((((((((.(((....))).))).....	chr22:50192133-50192433(-)$1	1	43	72	12.0291
((((.((((.(((....)))..)))).))	chr11:71189335-71189617(+)$1	1	183	212	12.5530
)(((((((..(((......))))))))))	chr14:23235911-23236153(+)$1	1	73	102	10.9054
((((((((..(((....)))..)))))))	chr22:43410884-43411214(-)$1	1	41	70	15.4237
((((((....(((....)))...))))))	chr7:79083314-79083664(+)$1	1	5	34	14.2963
..(((((((((((....))))..))))))	chr22:51017420-51017703(-)$1	1	107	136	12.4813
..(((.(((((((....)))).))).)))	chr12:132528663-132529000(+)$1	1	241	270	11.6920
(((.((((.((((....)))).)))).))	chr21:48055482-48055854(+)$1	1	205	234	10.9272
(.(((((((((((....)))..)))))..	chr2:232577413-232577629(+)$1	1	16	45	12.3522
(((((((.(.(((....)))..).)))))	chr4:10020763-10021116(-)$1	1	234	263	15.1650
.((((((((.(((....))).))))))))	chr16:22337129-22337424(+)$1	1	20	49	11.4232
(((.((((...((....)).)))).))).	chrX:133931033-133931343(-)$1	1	67	96	11.7077
.((((((...(((....)))..)))))).	chr3:71247258-71247537(-)$1	1	96	125	13.7858
(((((((.((.((....)).)).))))))	chr10:5932110-5932431(+)$1	1	153	182	11.7575
((((.(((..(((...)))....))).))	chr3:195695059-195695337(-)$1	1	82	111	12.0125
(((((.(...(((....)))).)).))))	chr19:2810566-2810864(+)$1	1	189	218	12.5105
((((((((((.((....)).))))))).)	chr2:46926353-46926623(+)$1	1	54	83	11.9948
(((((((.(((((....)).))).)))))	chr3:171992058-171992320(+)$1	1	95	124	12.8145
(((((.(....((....))....).))))	chr9:94123790-94124071(-)$1	1	140	169	13.1455
.(((...(((.((....)).)))))))))	chr6:170704477-170704809(+)$1	1	205	234	11.2366
(((.(((.(((((....)).)))..))))	chr14:103570553-103570796(+)$1	1	155	184	11.6467
(..((((((.(((....)))..)))))).	chr8:145742986-145743304(-)$1	1	266	295	12.8268
(((.(((..((((....))))....))))	chr9:117002401-117002642(+)$1	1	80	109	12.3872
.(((((...((((....))))...)))))	chr17:56081209-56081463(-)$1	1	115	144	12.2280
(((((.(((..((....))..))).))))	chr8:145979001-145979260(-)$1	1	204	233	11.1231
((((((((((.((....))))))))))).	chr11:61036293-61036560(-)$1	1	136	165	12.4725
(((((.(((((((....))).)))).)))	chr19:39195483-39195731(+)$1	1	150	179	11.2170
((..((....(((....)))....))..)	chr8:101321915-101322277(-)$1	1	305	334	13.0050
(.((((....(((....)))...)))).)	chr16:722159-722423(+)$1	1	84	113	13.8444
.(((((((..(((....))).))))))).	chr22:29694762-29694991(+)$1	1	188	217	12.6838
((((((((..(((....)))..)))))).	chr3:52324436-52324686(+)$1	1	86	115	13.2059
(((...(((((((....))))))).))))	chr16:684617-684892(-)$1	1	193	222	10.6077
.(((((...((((....))))...)))))	chr17:56081177-56081399(-)$1	1	51	80	12.2280
((.((((.(((((....)))...)).)))	chr20:42086971-42087185(+)$1	1	102	131	12.0558
(((.(((((.(((....))).))))).))	chr11:597298-597545(+)$1	1	110	139	12.4967
((((((((..(((....)))...))))))	chr16:84215706-84216021(-)$1	1	45	74	15.9480

#PSSM
c : 0.20	g : 0.12	e : 0.09	d : 0.07	: : 0.07	f : 0.07	[ : 0.07	h : 0.05	i : 0.05	b : 0.05	= : 0.03	! : 0.03	a : 0.01	# : 0.01	" : 0.01	
g : 0.20	c : 0.18	f : 0.10	i : 0.09	e : 0.09	h : 0.07	d : 0.07	! : 0.05	b : 0.03	= : 0.03	[ : 0.03	# : 0.01	
g : 0.21	c : 0.20	f : 0.12	e : 0.10	i : 0.09	h : 0.07	d : 0.07	= : 0.03	[ : 0.03	! : 0.03	
g : 0.21	f : 0.12	c : 0.10	i : 0.09	[ : 0.09	h : 0.07	e : 0.07	d : 0.07	" : 0.03	! : 0.03	= : 0.03	a : 0.01	b : 0.01	
g : 0.21	f : 0.12	i : 0.09	[ : 0.09	e : 0.09	c : 0.09	d : 0.09	h : 0.05	" : 0.05	= : 0.03	b : 0.03	! : 0.01	
g : 0.18	[ : 0.10	d : 0.10	e : 0.10	f : 0.10	i : 0.09	c : 0.07	h : 0.05	" : 0.05	= : 0.03	b : 0.03	a : 0.01	# : 0.01	
g : 0.20	c : 0.12	d : 0.12	f : 0.09	i : 0.07	e : 0.07	# : 0.07	" : 0.07	h : 0.05	= : 0.03	a : 0.03	! : 0.01	b : 0.01	
# : 0.12	g : 0.12	c : 0.10	d : 0.10	[ : 0.10	" : 0.09	i : 0.07	h : 0.05	! : 0.05	e : 0.05	f : 0.05	= : 0.03	
! : 0.18	" : 0.14	c : 0.12	# : 0.12	d : 0.07	e : 0.07	i : 0.05	g : 0.05	a : 0.03	[ : 0.03	b : 0.03	= : 0.01	h : 0.01	f : 0.01	
d : 0.21	! : 0.20	[ : 0.14	" : 0.10	# : 0.10	e : 0.05	c : 0.05	i : 0.03	b : 0.03	g : 0.03	
c : 0.49	d : 0.18	[ : 0.10	" : 0.07	! : 0.05	# : 0.05	e : 0.01	g : 0.01	
c : 0.52	b : 0.23	d : 0.18	" : 0.01	e : 0.01	g : 0.01	
c : 0.52	b : 0.23	d : 0.18	a : 0.01	e : 0.01	g : 0.01	
m : 0.89	c : 0.07	o : 0.01	l : 0.01	
m : 0.89	l : 0.09	o : 0.01	
m : 0.89	l : 0.09	o : 0.01	
m : 0.89	l : 0.07	o : 0.01	c : 0.01	
c : 0.50	b : 0.23	d : 0.18	a : 0.01	e : 0.01	o : 0.01	g : 0.01	
c : 0.50	b : 0.23	d : 0.18	3 : 0.01	e : 0.01	o : 0.01	g : 0.01	
c : 0.50	d : 0.18	] : 0.12	4 : 0.07	3 : 0.03	e : 0.01	2 : 0.01	i : 0.01	g : 0.01	
2 : 0.21	d : 0.20	3 : 0.14	] : 0.12	4 : 0.09	c : 0.07	g : 0.03	= : 0.01	h : 0.01	e : 0.01	b : 0.01	a : 0.01	i : 0.01	
2 : 0.25	3 : 0.18	4 : 0.10	c : 0.10	] : 0.07	i : 0.05	g : 0.05	h : 0.03	e : 0.03	d : 0.03	a : 0.01	= : 0.01	b : 0.01	
3 : 0.16	c : 0.12	4 : 0.10	d : 0.10	g : 0.09	i : 0.07	2 : 0.07	f : 0.07	e : 0.05	h : 0.03	] : 0.03	= : 0.01	a : 0.01	b : 0.01	
g : 0.18	d : 0.12	c : 0.10	f : 0.10	i : 0.07	e : 0.07	h : 0.05	b : 0.05	3 : 0.05	2 : 0.03	= : 0.03	] : 0.03	4 : 0.03	a : 0.01	
g : 0.20	d : 0.10	e : 0.10	f : 0.10	c : 0.09	] : 0.09	i : 0.07	h : 0.05	b : 0.05	= : 0.03	a : 0.01	> : 0.01	2 : 0.01	4 : 0.01	
g : 0.21	f : 0.14	e : 0.12	d : 0.10	c : 0.10	i : 0.07	] : 0.07	h : 0.05	= : 0.03	2 : 0.01	> : 0.01	b : 0.01	
g : 0.23	f : 0.14	e : 0.12	] : 0.09	c : 0.09	i : 0.07	d : 0.07	h : 0.05	2 : 0.03	= : 0.03	a : 0.01	> : 0.01	
g : 0.21	c : 0.14	f : 0.14	e : 0.09	] : 0.09	h : 0.07	i : 0.07	d : 0.07	= : 0.03	2 : 0.03	> : 0.01	
g : 0.20	c : 0.16	e : 0.10	d : 0.09	2 : 0.09	i : 0.07	f : 0.07	h : 0.05	] : 0.05	= : 0.03	b : 0.01	> : 0.01	: : 0.01	

#score	684.2161451721332
#seq	55
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_UTR_m1_run2.txt

#BEAR
cccdddd[ccc[ccc[aooooooa]ccc]ccc]dddd]cc	chr2:159313554-159313833(+)$1	279	186	226	15.1755
c[eeeee[acccccc[cccooooooccc]ccc]ccc]a]e	chr1:39456853-39457114(+)$1	261	167	207	18.6780
::dddd"""ccc[a!!cccooooooccc4444a]ccc333	chr5:881119-881409(-)$1	290	236	276	16.8701
c!!a[bb[dddd[ccc[cccnnnnnccccccdddd]bb]a	chr9:117008045-117008293(+)$1	248	160	200	12.7010
c[dddd####eeeee"""bboooooobb333eeeee333d	chr5:154172202-154172461(+)$1	259	176	216	14.4661
FFFFF:==========cccooooooccc333=========	chr16:29985803-29986060(+)$1	257	163	203	15.5311
hhhhhhh[ccc[ccc!!cccnnnnnccc22cccccc]hhh	chr4:75023730-75024106(+)$1	376	105	145	13.9412
a[ffffffccc!!a[ccc[ccclllccc]ccc]accc22f	chr2:182756806-182757105(+)$1	299	156	196	13.5735
G:dddd[gggggggbbcccooooooccc]bb]ggggggg2	chr11:66384250-66384497(+)$1	247	120	160	14.0201
ccc[bb####eeeee[cccooooooccceeeee4444bb]	chr9:117015066-117015312(+)$1	246	97	137	15.5122
dd!!ccc[dddd[bb[aooooooa]bb]dddd]cccdddd	chr6:43008613-43008878(-)$1	265	60	100	12.6065
dddccc[hhhhhhhhddddoooooodddd4444hhhhhhh	chr17:76793729-76794062(-)$1	333	171	211	13.1091
gggggeeeee[dddd!!bboooooobb]dddd]eeeeeGG	chr15:63340657-63340995(+)$1	338	55	95	12.4937
ggggggg####bb"""cccooooooccc22bb333ggggg	chr21:34143740-34144183(-)$1	443	205	245	18.0454
ccc"""dddd"""ffffffooooooffffff333dddd33	chr1:24127100-24127337(-)$1	237	179	219	14.4886
hheeeee"""ccc"""cccmmmmcccccc]eeeee]hhhh	chr16:23569163-23569436(+)$1	273	163	203	12.2799
d[a"""ggggggg[a[ddddllldddda]ggggggg333a	chr11:67810825-67811065(+)$1	240	92	132	12.9538
bb[ccc[dddd[ccc[aooooooa]cccdddd]cccbb]c	chr9:117044736-117044944(+)$1	208	11	51	14.0106
gggg[eeeee!!ccc[cccmmmmccc]ccc333eeeee]g	chr3:15900774-15901085(-)$1	311	62	102	13.2287
!!eeeee[ccc[a[a!!cccmmmmccc22a]a]ccceeee	chr2:231577641-231578049(+)$1	408	266	306	13.7419
!!ffffff[bb[ccc!!bboooooobb22cccbbffffff	chr9:116999171-116999404(+)$1	233	121	161	13.7280
:ffffff[==========oooooo==========]fffff	chr16:16259421-16259718(-)$1	297	165	205	14.3180
###dddd[bb[ccc[ccc[aooooooaccc22ccc]bb]d	chr8:494667-494930(-)$1	263	135	175	14.8566
d[ccc$$$$$eeeee[bbaooooooa]bb]eeeeeccc]d	chr17:17740021-17740294(-)$1	273	159	199	13.6243
gggggg!!bb[cccffffffooooooffffff333ccc]b	chr11:124492795-124493094(+)$1	299	147	187	14.8553
fffff!!gggggggeeeeeooooooeeeee]ggggggg22	chr16:9185573-9185883(+)$1	310	124	164	14.2086
d!!a[=============oooooo=============a22	chr9:139722857-139723099(+)$1	242	3	43	16.9416
FF==========####cccooooooccc22==========	chr11:67810937-67811152(+)$1	215	58	98	18.0068
!eeeee!!ccc[ccc[ddddoooooodddd]cccccceee	chr2:109150910-109151184(+)$1	274	213	253	14.9988
hhhhhh[ccc[ccc[ddddnnnnndddd]ccc]ccc]hhh	chr2:242592827-242593080(+)$1	253	137	177	12.3965
$$$$$ccc!!cccgggggggnnnnnggggggg]ccc333c	chr2:232576505-232576750(+)$1	245	65	105	12.1200
f[bb[bb[bb####eeeeeooooooeeeee333bb]bb22	chr8:81785729-81786101(-)$1	372	66	106	13.9509
a[eeeee[ccc[bb[ddddooooooddddbbccc22eeee	chr12:30907672-30907970(-)$1	298	169	209	13.9134
dd[dddd[eeeee"""cccooooooccc333eeeee22dd	chr9:116997826-116998032(+)$1	206	19	59	15.9534
c[accc"""ffffffbb[aooooooabb22ffffffccc]	chr14:31028277-31028591(+)$1	314	269	309	14.2691
hhhhhhh"""ccc"""bboooooobb333ccc]hhhhhhh	chr2:233877676-233877964(-)$1	288	72	112	14.4721
g!!iiiiiiiii"""ccc!!bblllbb22ccc333iiiii	chr12:50479025-50479422(+)$1	397	250	290	13.9231
ff[ggggggg"""a"""cccmmmmccc22a333ggggggg	chr12:132198644-132198904(+)$1	260	98	138	14.3640
dd[ggggggga[ccc[cccooooooccc]ccc]a333ggg	chr6:42531936-42532320(+)$1	384	161	201	18.6089
ccc!!bb"""dddd[a[a[ccclllccc]a]a]dddd333	chr16:720626-720871(+)$1	245	179	219	13.2300
ddd[ccca[dddd!!ddddoooooodddd22dddd22a]c	chr11:67771312-67771671(-)$1	359	199	239	14.0228
ggg[bb%%%%%%a[a[cccooooooccca]a4444bbggg	chr22:25801159-25801431(-)$1	272	179	219	13.9354
==========="""cccqqqqqqqqccc]===========	chr17:46051664-46051903(+)$1	239	37	77	12.8869
gggggg"""ccc[ffffffnnnnnffffff333cccgggg	chr17:80146090-80146330(-)$1	240	94	134	13.5801
b[bb[bb[ccc[a[eeeeeooooooeeeee]a]ccc]bbb	chr8:101321915-101322277(-)$1	362	118	158	14.4189
ddd[iiiiiiiii"""cccooooooccc4444iiiiiiii	chr8:42178167-42178472(+)$1	305	224	264	18.6988
iiiiii!!dddd[ccc[ddddllldddd]ccc333ddddi	chr11:3774431-3774704(-)$1	273	10	50	12.6830
iiiiii!!ggggggg[cccbbnnnnnbb]ccc]ggggggg	chr20:17949045-17949302(-)$1	257	21	61	13.2428
!!ggggggg"""ccc[cccmmmmcccccc]ggggggg22b	chr2:39664092-39664410(-)$1	318	231	271	13.5130
ggggggg[a[ccc"""cccooooooccc4444cccagggg	chr21:47648246-47648533(-)$1	287	99	139	19.1511
ccc[ccc[bb[a[ffffffooooooffffff]a333bb]c	chr2:216190624-216190943(+)$1	319	271	311	15.1363
b[bb[ffffff[ddddcccooooooccc]dddd333ffff	chr7:99691696-99691970(-)$1	274	97	137	14.4957
dddd[eeeeecccffffffooooooffffff]ccc4444e	chr19:12786741-12787039(-)$1	298	158	198	13.6976
hhhhh!!cccdddd!!ddddoooooodddd4444dddd]c	chr16:75299697-75299979(-)$1	282	122	162	14.1299

#otherMatches

#Seq PSSM
GGGCUCGCGGGAGGGCGCGGAGACUCCUGCCCACGAGACC	chr2:159313554-159313833(+)$1	279	186	226	15.1755
CGUCCGCUCCCGGUCCCUGGCCCCUCAGCGGCAUGGCGUG	chr1:39456853-39457114(+)$1	261	167	207	18.6780
UGGGCCUCCGUUGAUAUUCUGUAAUGAAAAGCUGAGCCAU	chr5:881119-881409(-)$1	290	236	276	16.8701
UCUCUGAAUGAGUGGCUccauuuauugggcccuuacucug	chr9:117008045-117008293(+)$1	248	160	200	12.7010
UGGGAGAAGGUGGCAGGGUAGAACUGUGAAAUGUCAGGAC	chr5:154172202-154172461(+)$1	259	176	216	14.4661
CAGGUGAGACACGGGGUGCAGGGGCGCGGGUCCCUGUGUC	chr16:29985803-29986060(+)$1	257	163	203	15.5311
GAAGCCGGGGAUCCGCGGCCAUGACGGUGCCGGUCCGCGG	chr4:75023730-75024106(+)$1	376	105	145	13.9412
aggacCUCCCCGGCGCGCAGCUGCCGGCAGCGGGGGGAAG	chr2:182756806-182757105(+)$1	299	156	196	13.5735
GCGGCCGGGGCGCGCGCUCGUGGUGGAGAUGUCGCGCCCA	chr11:66384250-66384497(+)$1	247	120	160	14.0201
UCCUGGAAUGCCAGGUGGUAUGGGGACCCCUGGAGAGCCU	chr9:117015066-117015312(+)$1	246	97	137	15.5122
CUCAGGUGAGUGAGCAGUUCGCCCGGCACAUUGACCAGCA	chr6:43008613-43008878(-)$1	265	60	100	12.6065
CUGCUGCGCUGGGAGCCUGUCACGGUAGGAGCUCUCCCGG	chr17:76793729-76794062(-)$1	333	171	211	13.1091
UCCGCAGGGCAGCAGCCGGCCUCUCCCACUGCAGCCCUCC	chr15:63340657-63340995(+)$1	338	55	95	12.4937
UGUUCCGAAAGGCCCGGCGGGUGAACGUGCGCAAGCGGAA	chr21:34143740-34144183(-)$1	443	205	245	18.0454
CGGGGAGUCCGCGGGGAGCGAGGGAGUUUCCGAGGGGCGG	chr1:24127100-24127337(-)$1	237	179	219	14.4886
GCGCGGCCCGUCAACUGCCUGGAGGCUGAAgccgcggcgg	chr16:23569163-23569436(+)$1	273	163	203	12.2799
UUGCCAGCUUCAGGGAGCUGGAGCAGCCGCUGGAGCACCC	chr11:67810825-67811065(+)$1	240	92	132	12.9538
CUAUCAAGGACAGCUGGGUGAGAUGGGCGUCCCUGGAGAC	chr9:117044736-117044944(+)$1	208	11	51	14.0106
GCUGGUCCCGggcagcggccaaggcuacuggggcgggagc	chr3:15900774-15901085(-)$1	311	62	102	13.2287
GACGCGGAGGCAGAGAAGGGAACGCCCGGCCCAGCCCCGU	chr2:231577641-231578049(+)$1	408	266	306	13.7419
ACGGGGGAAGCCAGGGCCUCUGGUAAGUACCUGCUCCUCC	chr9:116999171-116999404(+)$1	233	121	161	13.7280
UGGUGGUGGCAGUGGCUACCCCACUGGCCACUGUGGCCAU	chr16:16259421-16259718(-)$1	297	165	205	14.3180
CGACGCACGGACGGAGGGACGCCGGAGCCCGCCUGACCAU	chr8:494667-494930(-)$1	263	135	175	14.8566
CGCCAUGGACGAGCCACCCUUCAGCGAGGCGGCUUUGGAG	chr17:17740021-17740294(-)$1	273	159	199	13.6243
CGGCAGCGUCCUGGGGCCCCCGUAGCGGGGCUGGACCAUG	chr11:124492795-124493094(+)$1	299	147	187	14.8553
GCGGGGGUCGUCCCUGGUUGCAcggggccgcggggcgggg	chr16:9185573-9185883(+)$1	310	124	164	14.2086
UGAGUGGCCAUGGGGGGACCAUGCUCCUCCUAUGGCCCAA	chr9:139722857-139723099(+)$1	242	3	43	16.9416
GGGCAGAGCGGGACCCCAGAGUCAGCUGAGCCUGCUCUGC	chr11:67810937-67811152(+)$1	215	58	98	18.0068
cgggccuggcgcgggcgggcggccgggcUUUCCCCGCGGC	chr2:109150910-109151184(+)$1	274	213	253	14.9988
AUGCUGCGGUGUGGACAGAUGAUCUUUGCCCAAGCCCUGG	chr2:242592827-242593080(+)$1	253	137	177	12.3965
AAUGACAUGGCCUGUUUUCUGUCGAGGAGAAUGAGGAAAA	chr2:232576505-232576750(+)$1	245	65	105	12.1200
CGCCGGUGCUGCUGCUUCUAGGGGAGGAAGACGAGGACGA	chr8:81785729-81786101(-)$1	372	66	106	13.9509
GAGGAGGAGACGCGAGUGCGGGGUGGCGCCGGUCCACCUC	chr12:30907672-30907970(-)$1	298	169	209	13.9134
CCAUUGUAACCUUCUUUGCUGGUGUGUACUUAGGGUGAAC	chr9:116997826-116998032(+)$1	206	19	59	15.9534
GGGUGUCAGGAGGCCGGACGUCGCAGCCGGGGCCUCGCAG	chr14:31028277-31028591(+)$1	314	269	309	14.2691
CCUGUGGAUUUAGCCGGGGACACACCAUCCUGCUCGCAGG	chr2:233877676-233877964(-)$1	288	72	112	14.4721
CCGGCUCCGGGUCAAGGGCUGUACCGCUCCCCGAUGCCCG	chr12:50479025-50479422(+)$1	397	250	290	13.9231
UUAGCCUUGCAUACGGACUUGCUUGAGGAGGAGGCAAGGC	chr12:132198644-132198904(+)$1	260	98	138	14.3640
GGAGCUUGCUGGAAUGUUCGGCCGAGGAGAUUGCGGGGGU	chr6:42531936-42532320(+)$1	384	161	201	18.6089
CCCUUGAACCUCCGCUGCCGUUAGUGACUGGAACGGGUCG	chr16:720626-720871(+)$1	245	179	219	13.2300
GGGGCCGCAGGGCGACGAGGACCUGCUCGGGGUCCCGGAC	chr11:67771312-67771671(-)$1	359	199	239	14.0228
CGCUGGACAACAUGGAGGCUGCACUGCCCGGGCCGCCGUG	chr22:25801159-25801431(-)$1	272	179	219	13.9354
UUGAGCUGGGAUGUGGCUGUCGAGUGCUUUUCUGGCUUAA	chr17:46051664-46051903(+)$1	239	37	77	12.8869
GAGCCCACGUGGAGCAGCUGCAGGAGCUGCAGACCAGGGU	chr17:80146090-80146330(-)$1	240	94	134	13.5801
CCGCUGCUGGGAGAUGGGCCUACUCGCCCGCCACCCUGCG	chr8:101321915-101322277(-)$1	362	118	158	14.4189
CCCAGCACACACAGACAGCCCUGGAGCUUCGGUGUGUGUG	chr8:42178167-42178472(+)$1	305	224	264	18.6988
GAGGAAAUUGAGAGUUAUAUUAAAAGUACAAUCCACUCAU	chr11:3774431-3774704(-)$1	273	10	50	12.6830
UGCUCUGGGGGAGCACGUGGCGCCCUGCUCGCCUGCUCCC	chr20:17949045-17949302(-)$1	257	21	61	13.2428
CGGCCCCCCUCCCCUGCCCGGGAGGGAGGCGGGGGGCACC	chr2:39664092-39664410(-)$1	318	231	271	13.5130
GGCCGGCAGACGUGGACCUACCUGCAGGACGAGCGCGCCG	chr21:47648246-47648533(-)$1	287	99	139	19.1511
CCAUGGAGUGCAGUGUUUGCCAGACCAAGCAGuauucagu	chr2:216190624-216190943(+)$1	319	271	311	15.1363
GAGGCUUGGGCUAGUAAGGAUGCCACCUAUACUUCUGCCC	chr7:99691696-99691970(-)$1	274	97	137	14.4957
GACGAGGCUGUCUCCUGGGGCAAGAUCCGGGUGGAUGCAC	chr19:12786741-12787039(-)$1	298	158	198	13.6976
UCAGGAGCCGGAGGAGCCGGAAAGCGCCGGGACCCCUCGC	chr16:75299697-75299979(-)$1	282	122	162	14.1299

#DB
(((((((.(((.(((.(......).))).))).)))).))	chr2:159313554-159313833(+)$1	1	186	226	15.1755
(.(((((.(((((((.(((......))).))).))).).)	chr1:39456853-39457114(+)$1	1	167	207	18.6780
..((((...(((.(..(((......)))....).)))...	chr5:881119-881409(-)$1	1	236	276	16.8701
(..(.((.((((.(((.(((.....)))))))))).)).)	chr9:117008045-117008293(+)$1	1	160	200	12.7010
(.((((....(((((...((......))...)))))...)	chr5:154172202-154172461(+)$1	1	176	216	14.4661
))))).(((((((((((((......)))...)))))))))	chr16:29985803-29986060(+)$1	1	163	203	15.5311
(((((((.(((.(((..(((.....)))..)))))).)))	chr4:75023730-75024106(+)$1	1	105	145	13.9412
(.(((((((((..(.(((.(((...))).))).))))..)	chr2:182756806-182757105(+)$1	1	156	196	13.5735
).((((.((((((((((((......))).)).))))))).	chr11:66384250-66384497(+)$1	1	120	160	14.0201
(((.((....(((((.(((......))))))))....)).	chr9:117015066-117015312(+)$1	1	97	137	15.5122
((..(((.((((.((.(......).)).)))).)))))))	chr6:43008613-43008878(-)$1	1	60	100	12.6065
((((((.((((((((((((......))))....)))))))	chr17:76793729-76794062(-)$1	1	171	211	13.1091
)))))(((((.((((..((......)).)))).)))))))	chr15:63340657-63340995(+)$1	1	55	95	12.4937
(((((((....((...(((......)))..))...)))))	chr21:34143740-34144183(-)$1	1	205	245	18.0454
(((...((((...((((((......))))))...))))..	chr1:24127100-24127337(-)$1	1	179	219	14.4886
(((((((...(((...(((....)))))).))))).))))	chr16:23569163-23569436(+)$1	1	163	203	12.2799
(.(...(((((((.(.((((...))))).)))))))...)	chr11:67810825-67811065(+)$1	1	92	132	12.9538
((.(((.((((.(((.(......).))))))).))))).)	chr9:117044736-117044944(+)$1	1	11	51	14.0106
((((.(((((..(((.(((....))).)))...))))).)	chr3:15900774-15901085(-)$1	1	62	102	13.2287
..(((((.(((.(.(..(((....)))..).).)))))))	chr2:231577641-231578049(+)$1	1	266	306	13.7419
..((((((.((.(((..((......))..)))))))))))	chr9:116999171-116999404(+)$1	1	121	161	13.7280
.((((((.((((((((((......)))))))))).)))))	chr16:16259421-16259718(-)$1	1	165	205	14.3180
...((((.((.(((.(((.(......))))..))).)).)	chr8:494667-494930(-)$1	1	135	175	14.8566
(.(((.....(((((.(((......).)).)))))))).)	chr17:17740021-17740294(-)$1	1	159	199	13.6243
((((((..((.(((((((((......))))))...))).)	chr11:124492795-124493094(+)$1	1	147	187	14.8553
(((((..((((((((((((......))))).)))))))..	chr16:9185573-9185883(+)$1	1	124	164	14.2086
(..(.(((((((((((((......))))))))))))))..	chr9:139722857-139723099(+)$1	1	3	43	16.9416
((((((((((((....(((......)))..))))))))))	chr11:67810937-67811152(+)$1	1	58	98	18.0068
.(((((..(((.(((.((((......)))).)))))))))	chr2:109150910-109151184(+)$1	1	213	253	14.9988
((((((.(((.(((.((((.....)))).))).))).)))	chr2:242592827-242593080(+)$1	1	137	177	12.3965
.....(((..((((((((((.....))))))).)))...)	chr2:232576505-232576750(+)$1	1	65	105	12.1200
(.((.((.((....(((((......)))))...)).))..	chr8:81785729-81786101(-)$1	1	66	106	13.9509
(.(((((.(((.((.((((......)))))))))..))))	chr12:30907672-30907970(-)$1	1	169	209	13.9134
((.((((.(((((...(((......)))...)))))..))	chr9:116997826-116998032(+)$1	1	19	59	15.9534
(.((((...((((((((.(......)))..))))))))).	chr14:31028277-31028591(+)$1	1	269	309	14.2691
(((((((...(((...((......))...))).)))))))	chr2:233877676-233877964(-)$1	1	72	112	14.4721
(..(((((((((...(((..((...))..)))...)))))	chr12:50479025-50479422(+)$1	1	250	290	13.9231
((.(((((((...(...(((....)))..)...)))))))	chr12:132198644-132198904(+)$1	1	98	138	14.3640
((.((((((((.(((.(((......))).))).)...)))	chr6:42531936-42532320(+)$1	1	161	201	18.6089
(((..((...((((.(.(.(((...))).).).))))...	chr16:720626-720871(+)$1	1	179	219	13.2300
(((.((((.((((..((((......))))..))))..).)	chr11:67771312-67771671(-)$1	1	199	239	14.0228
(((.((......(.(.(((......)))).)....)))))	chr22:25801159-25801431(-)$1	1	179	219	13.9354
(((((((((((...(((........))).)))))))))))	chr17:46051664-46051903(+)$1	1	37	77	12.8869
((((((...(((.((((((.....))))))...)))))))	chr17:80146090-80146330(-)$1	1	94	134	13.5801
(.((.((.(((.(.(((((......))))).).))).)))	chr8:101321915-101322277(-)$1	1	118	158	14.4189
(((.(((((((((...(((......)))....))))))))	chr8:42178167-42178472(+)$1	1	224	264	18.6988
((((((..((((.(((.((((...)))).)))...)))))	chr11:3774431-3774704(-)$1	1	10	50	12.6830
((((((..(((((((.(((((.....)).))).)))))))	chr20:17949045-17949302(-)$1	1	21	61	13.2428
..(((((((...(((.(((....)))))).)))))))..)	chr2:39664092-39664410(-)$1	1	231	271	13.5130
(((((((.(.(((...(((......)))....))))))))	chr21:47648246-47648533(-)$1	1	99	139	19.1511
(((.(((.((.(.((((((......)))))).)...)).)	chr2:216190624-216190943(+)$1	1	271	311	15.1363
(.((.((((((.(((((((......))).))))...))))	chr7:99691696-99691970(-)$1	1	97	137	14.4957
((((.((((((((((((((......)))))).)))....)	chr19:12786741-12787039(-)$1	1	158	198	13.6976
(((((..(((((((..((((......))))....)))).)	chr16:75299697-75299979(-)$1	1	122	162	14.1299

#PSSM
d : 0.18	c : 0.16	g : 0.14	h : 0.09	! : 0.07	b : 0.05	f : 0.05	: : 0.03	F : 0.03	a : 0.03	i : 0.03	G : 0.01	# : 0.01	$ : 0.01	= : 0.01	
[ : 0.18	d : 0.12	g : 0.12	! : 0.11	c : 0.09	h : 0.09	f : 0.05	: : 0.03	F : 0.03	i : 0.03	b : 0.01	# : 0.01	e : 0.01	$ : 0.01	= : 0.01	
g : 0.14	d : 0.12	c : 0.11	e : 0.09	! : 0.07	h : 0.07	f : 0.07	[ : 0.07	b : 0.05	a : 0.03	= : 0.03	i : 0.03	F : 0.01	# : 0.01	$ : 0.01	
g : 0.16	d : 0.12	e : 0.09	[ : 0.09	h : 0.07	f : 0.07	c : 0.07	b : 0.05	i : 0.05	a : 0.03	! : 0.03	" : 0.03	= : 0.03	F : 0.01	$ : 0.01	
g : 0.14	[ : 0.12	c : 0.12	d : 0.11	e : 0.09	h : 0.07	f : 0.07	i : 0.07	b : 0.03	" : 0.03	= : 0.03	F : 0.01	$ : 0.01	! : 0.01	
e : 0.14	c : 0.12	g : 0.12	d : 0.11	b : 0.11	f : 0.07	i : 0.07	h : 0.05	= : 0.05	" : 0.03	! : 0.03	: : 0.01	$ : 0.01	
e : 0.12	g : 0.11	! : 0.11	d : 0.07	b : 0.07	= : 0.07	f : 0.07	[ : 0.07	c : 0.07	" : 0.05	# : 0.03	h : 0.03	i : 0.03	$ : 0.01	% : 0.01	
[ : 0.25	" : 0.11	g : 0.11	= : 0.07	! : 0.07	# : 0.05	f : 0.05	e : 0.05	c : 0.05	d : 0.03	i : 0.03	h : 0.01	$ : 0.01	a : 0.01	% : 0.01	
c : 0.16	g : 0.12	" : 0.11	d : 0.09	= : 0.09	e : 0.07	b : 0.07	# : 0.05	a : 0.03	[ : 0.03	i : 0.03	h : 0.01	$ : 0.01	! : 0.01	% : 0.01	f : 0.01	
c : 0.22	d : 0.11	g : 0.11	= : 0.09	b : 0.09	e : 0.07	" : 0.07	# : 0.05	f : 0.03	i : 0.03	h : 0.01	$ : 0.01	! : 0.01	% : 0.01	[ : 0.01	
c : 0.27	d : 0.12	= : 0.09	[ : 0.09	e : 0.07	g : 0.07	" : 0.05	# : 0.03	f : 0.03	i : 0.03	h : 0.01	! : 0.01	b : 0.01	a : 0.01	% : 0.01	
c : 0.20	[ : 0.18	d : 0.12	e : 0.07	= : 0.07	g : 0.07	" : 0.07	! : 0.03	i : 0.03	h : 0.01	b : 0.01	# : 0.01	f : 0.01	% : 0.01	a : 0.01	
c : 0.31	[ : 0.11	d : 0.09	e : 0.07	g : 0.07	" : 0.07	= : 0.05	a : 0.05	b : 0.03	# : 0.03	! : 0.01	h : 0.01	f : 0.01	i : 0.01	
c : 0.25	" : 0.14	f : 0.09	g : 0.07	d : 0.07	[ : 0.07	a : 0.05	e : 0.05	= : 0.05	b : 0.03	# : 0.03	h : 0.01	! : 0.01	
c : 0.22	" : 0.14	e : 0.11	f : 0.11	[ : 0.09	! : 0.05	= : 0.05	a : 0.05	b : 0.03	d : 0.03	g : 0.03	h : 0.01	# : 0.01	
[ : 0.24	" : 0.14	! : 0.11	c : 0.11	d : 0.09	f : 0.09	= : 0.05	e : 0.05	b : 0.03	# : 0.01	g : 0.01	a : 0.01	
c : 0.38	d : 0.12	f : 0.09	! : 0.07	a : 0.05	[ : 0.05	b : 0.05	e : 0.05	" : 0.03	= : 0.03	g : 0.01	
c : 0.44	d : 0.14	f : 0.09	b : 0.07	o : 0.05	e : 0.05	= : 0.03	" : 0.01	g : 0.01	[ : 0.01	a : 0.01	q : 0.01	
c : 0.38	d : 0.14	o : 0.11	f : 0.09	b : 0.05	[ : 0.05	e : 0.05	a : 0.03	g : 0.01	! : 0.01	q : 0.01	
o : 0.59	c : 0.11	d : 0.07	m : 0.05	b : 0.03	n : 0.03	a : 0.01	f : 0.01	g : 0.01	! : 0.01	q : 0.01	
o : 0.68	n : 0.09	m : 0.09	c : 0.03	b : 0.03	l : 0.01	q : 0.01	d : 0.01	
o : 0.68	n : 0.11	m : 0.09	c : 0.03	l : 0.03	b : 0.01	q : 0.01	
o : 0.68	n : 0.11	l : 0.09	m : 0.09	q : 0.01	
o : 0.62	n : 0.11	l : 0.07	a : 0.05	c : 0.05	m : 0.03	d : 0.01	q : 0.01	
o : 0.57	c : 0.09	n : 0.07	] : 0.05	l : 0.05	d : 0.05	= : 0.03	b : 0.01	q : 0.01	f : 0.01	
c : 0.46	d : 0.11	o : 0.09	b : 0.09	f : 0.07	e : 0.05	= : 0.03	a : 0.03	g : 0.01	n : 0.01	
c : 0.44	d : 0.14	b : 0.12	f : 0.09	e : 0.05	] : 0.03	= : 0.03	a : 0.01	g : 0.01	3 : 0.01	
c : 0.44	d : 0.12	f : 0.09	b : 0.07	2 : 0.07	e : 0.05	] : 0.03	= : 0.03	a : 0.01	g : 0.01	3 : 0.01	
] : 0.22	2 : 0.14	d : 0.14	c : 0.09	f : 0.09	3 : 0.07	e : 0.07	4 : 0.05	= : 0.03	b : 0.01	g : 0.01	a : 0.01	
c : 0.24	d : 0.11	2 : 0.09	f : 0.09	4 : 0.07	e : 0.07	] : 0.07	3 : 0.05	a : 0.05	= : 0.05	b : 0.03	g : 0.03	
c : 0.22	3 : 0.12	4 : 0.09	f : 0.09	] : 0.09	d : 0.07	= : 0.07	b : 0.05	e : 0.05	g : 0.05	2 : 0.03	a : 0.01	
c : 0.24	4 : 0.11	d : 0.11	e : 0.09	= : 0.09	3 : 0.09	g : 0.07	] : 0.05	a : 0.05	f : 0.03	b : 0.01	2 : 0.01	
] : 0.25	3 : 0.16	c : 0.11	e : 0.09	= : 0.09	g : 0.07	d : 0.05	4 : 0.05	a : 0.03	b : 0.01	f : 0.01	i : 0.01	
c : 0.25	3 : 0.12	e : 0.11	g : 0.11	= : 0.09	d : 0.07	4 : 0.05	a : 0.03	h : 0.03	b : 0.03	] : 0.01	f : 0.01	i : 0.01	
c : 0.27	3 : 0.12	d : 0.11	e : 0.11	g : 0.11	= : 0.07	4 : 0.03	h : 0.03	f : 0.03	] : 0.01	b : 0.01	2 : 0.01	i : 0.01	
c : 0.25	g : 0.12	d : 0.09	] : 0.07	e : 0.07	= : 0.07	f : 0.05	3 : 0.05	4 : 0.03	h : 0.03	2 : 0.03	i : 0.03	b : 0.01	a : 0.01	
g : 0.14	d : 0.11	c : 0.11	b : 0.11	] : 0.07	3 : 0.07	= : 0.07	e : 0.07	h : 0.05	f : 0.05	4 : 0.03	2 : 0.03	i : 0.03	
g : 0.16	b : 0.12	3 : 0.09	h : 0.09	e : 0.09	d : 0.07	a : 0.05	= : 0.05	2 : 0.05	f : 0.05	c : 0.05	i : 0.03	] : 0.01	4 : 0.01	
] : 0.18	g : 0.14	3 : 0.11	h : 0.09	2 : 0.09	= : 0.05	d : 0.05	e : 0.05	f : 0.05	c : 0.03	b : 0.03	i : 0.03	G : 0.01	4 : 0.01	
g : 0.14	c : 0.11	e : 0.09	d : 0.09	h : 0.09	f : 0.07	2 : 0.07	3 : 0.05	= : 0.05	b : 0.05	i : 0.05	a : 0.03	] : 0.03	G : 0.01	

#score	783.7618502571684
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_UTR_m2_run2.txt

#BEAR
ccc[eeeeemmmmeeeeecccggg	chr12:9907008-9907249(-)$1	241	141	165	9.3750
!a[ddddbbmmmmbb4444dddd]	chr3:50137412-50137683(+)$1	271	181	205	9.3394
ggggggcccmmmmccc]ggggggg	chr17:30697028-30697264(+)$1	236	180	204	11.1890
c[a!!ddddmmmmdddd22a]ccc	chr1:1019491-1019808(-)$1	317	105	129	9.7786
f!!bb!!bbmmmmbb22bb333ff	chr3:14519997-14520267(+)$1	270	236	260	9.8571
ffffffcccmmmmccc4444ffff	chr8:117863992-117864270(-)$1	278	145	169	9.5720
ee[ffffffmmmmffffff]eeee	chr6:99848196-99848497(-)$1	301	80	104	8.5739
[agggggggmmmmggggggg22a]	chr17:80441576-80441870(+)$1	294	243	267	10.6658
iccc"""bbmmmmbb333ccc]ii	chr14:21462988-21463249(+)$1	261	10	34	11.2237
f[bb[acccmmmmccc]a]bb]ff	chr4:174255230-174255488(-)$1	258	127	151	9.4276
hhhhhh[bbmmmmbb]hhhhhhhh	chr1:24297876-24298130(-)$1	254	85	109	9.3379
=========mmmm===========	chr6:31937123-31937379(+)$1	256	188	212	11.9588
g!!ccc[bbmmmmbb]ccc22ggg	chr1:11083311-11083571(+)$1	260	124	148	11.2152
##gggggggmmmmggggggg]ccc	chr11:75113423-75113698(+)$1	275	99	123	11.0916
[gggggggammmma]ggggggg]b	chr14:104145831-104146108(+)$1	277	84	108	10.6775
iiiiiiiiimmmmiiiiiiiiiii	chr7:42974664-42974963(+)$1	299	211	235	11.4908
iiiiiiiiinnnnniiiiiiiiid	chr17:74732044-74732300(-)$1	256	174	198	7.7231
eee"""cccmmmmccceeeeefff	chr16:2014642-2014875(-)$1	233	128	152	9.0729
ccc[addddmmmmdddd22a]ccc	chr15:45008481-45008722(+)$1	241	197	221	9.5493
!ccc[ddddmmmmddddccc4444	chr4:152020794-152021049(+)$1	255	137	161	9.4584
iiiiii[ccclllccc22iiiiii	chr1:33478584-33478882(-)$1	298	127	151	9.0317
d[dddd[bbmmmmbb]dddd]ddd	chr1:25570455-25570717(-)$1	262	234	258	9.3467
iiiii[ddddllldddd]iiiiii	chr19:51307649-51307908(-)$1	259	19	43	8.1498
gggggggooooooggggggg22dd	chr3:3189804-3190067(+)$1	263	200	224	7.7746
fffffddddmmmmdddd]ffffff	chr12:132195918-132196167(+)$1	249	215	239	8.9121
cc[ffffffmmmmffffffccc22	chr11:85372497-85372753(-)$1	256	45	69	8.8282
ccc[eeeeemmmmeeeeecccggg	chr12:9907049-9907258(-)$1	209	150	174	9.3750
ffffff[bbmmmmbb]ffffffdd	chr12:98991741-98992015(+)$1	274	209	233	9.8832
c[gggggggmmmmggggggg]ccc	chr5:180664426-180664677(-)$1	251	196	220	11.3751
c[gggggggmmmmggggggg]ccc	chr11:61732574-61732821(-)$1	247	185	209	11.3751
======[bbmmmmbb=========	chr6:160169357-160169583(+)$1	226	87	111	12.2685
ff[ccc[bbmmmmbb]cccfffff	chr4:83276240-83276532(-)$1	292	113	137	10.7346
:bbccc[bbmmmmbb]ccc]bbcc	chr6:31509554-31509798(-)$1	244	35	59	8.8415

#otherMatches

#Seq PSSM
AGCACUUUAAAUAUAAAGGCUGAG	chr12:9907008-9907249(-)$1	241	141	165	9.3750
AAGGUUUGCCAUGGCUAAGGAAUG	chr3:50137412-50137683(+)$1	271	181	205	9.3394
UUCCAAGUACUUGUACAUUGGAAG	chr17:30697028-30697264(+)$1	236	180	204	11.1890
GGUUUCCCAUCUCUGGGCCAGUCC	chr1:1019491-1019808(-)$1	317	105	129	9.7786
UGAAGAUCCUCCUGGUGCUAAAGG	chr3:14519997-14520267(+)$1	270	236	260	9.8571
GUAUUUAGGGAGGCCUUUUAAAGU	chr8:117863992-117864270(-)$1	278	145	169	9.5720
AGUAUACUUUUUAAAGUAUUUUGU	chr6:99848196-99848497(-)$1	301	80	104	8.5739
GUUGAAUGGGAUACCAUUCACCAG	chr17:80441576-80441870(+)$1	294	243	267	10.6658
CCAGCAAGGCUGACCGCACUGAGG	chr14:21462988-21463249(+)$1	261	10	34	11.2237
CUCUACUCGGUCUCGGCGCAGUGG	chr4:174255230-174255488(-)$1	258	127	151	9.4276
GAAAAAGACUCAUGUAUUUUUUAA	chr1:24297876-24298130(-)$1	254	85	109	9.3379
GCUCUCAGGGACCCCUGAGGGCCU	chr6:31937123-31937379(+)$1	256	188	212	11.9588
AACGCUAUGAACGCAAGGCUGUGA	chr1:11083311-11083571(+)$1	260	124	148	11.2152
UUUGUGUGUAUCAACAUACAUGUC	chr11:75113423-75113698(+)$1	275	99	123	11.0916
GAGGCGCCCCCAAGUGGCGCUUGC	chr14:104145831-104146108(+)$1	277	84	108	10.6775
UCUCAUUAUAUACAUAAUGAGAAG	chr7:42974664-42974963(+)$1	299	211	235	11.4908
CUCGGAGGUUACUCACCUUUGGGA	chr17:74732044-74732300(-)$1	256	174	198	7.7231
GGGUCGGGUCUAGGCUCCCGAGUC	chr16:2014642-2014875(-)$1	233	128	152	9.0729
GAAGAAUCCUACAGGGUCAUGUUC	chr15:45008481-45008722(+)$1	241	197	221	9.5493
GAUCGCGGCGUAGGCCGGAUGGCG	chr4:152020794-152021049(+)$1	255	137	161	9.4584
CCAUCCCUGUGAGGCAAUGGGUGG	chr1:33478584-33478882(-)$1	298	127	151	9.0317
UCUUUGUUCAGACGAUUAGGUGCC	chr1:25570455-25570717(-)$1	262	234	258	9.3467
CGCGCACUAUAAAAUGGCGCGUGC	chr19:51307649-51307908(-)$1	259	19	43	8.1498
AGAUCCACCUUUCUGGAUCUGAUU	chr3:3189804-3190067(+)$1	263	200	224	7.7746
UCCUCCUGGUGUUCUGGUGGGGAG	chr12:132195918-132196167(+)$1	249	215	239	8.9121
UGUGGGUCUUAAAAGGUUCUGGAA	chr11:85372497-85372753(-)$1	256	45	69	8.8282
AGCACUUUAAAUAUAAAGGCUGAG	chr12:9907049-9907258(-)$1	209	150	174	9.3750
GCCUGUGUCAGCAGAGACAGGUUG	chr12:98991741-98992015(+)$1	274	209	233	9.8832
UUGAUGAGGAUGCCCUCGUUUGCC	chr5:180664426-180664677(-)$1	251	196	220	11.3751
UUGCUGACUUCUAGGUUAGUUGGU	chr11:61732574-61732821(-)$1	247	185	209	11.3751
CACUACGAGAAAGCUGUGGUGGGA	chr6:160169357-160169583(+)$1	226	87	111	12.2685
UAGUAGUUUUUAUAAUCUAUAUUG	chr4:83276240-83276532(-)$1	292	113	137	10.7346
CGCUGUUGCUGCCGCCAUACGCGC	chr6:31509554-31509798(-)$1	244	35	59	8.8415

#DB
(((.(((((....))))))))(((	chr12:9907008-9907249(-)$1	1	141	165	9.3750
.(.((((((....))....)))).	chr3:50137412-50137683(+)$1	1	181	205	9.3394
(((((((((....))).)))))))	chr17:30697028-30697264(+)$1	1	180	204	11.1890
(.(..((((....))))..).)))	chr1:1019491-1019808(-)$1	1	105	129	9.7786
(..((..((....))..))...))	chr3:14519997-14520267(+)$1	1	236	260	9.8571
(((((((((....)))....))))	chr8:117863992-117864270(-)$1	1	145	169	9.5720
((.((((((....)))))).))))	chr6:99848196-99848497(-)$1	1	80	104	8.5739
.((((((((....)))))))..).	chr17:80441576-80441870(+)$1	1	243	267	10.6658
((((...((....))...))).))	chr14:21462988-21463249(+)$1	1	10	34	11.2237
(.((.((((....))).).)).))	chr4:174255230-174255488(-)$1	1	127	151	9.4276
((((((.((....)).))))))))	chr1:24297876-24298130(-)$1	1	85	109	9.3379
(((((((((....)))))))))))	chr6:31937123-31937379(+)$1	1	188	212	11.9588
(..(((.((....)).)))..)))	chr1:11083311-11083571(+)$1	1	124	148	11.2152
..(((((((....))))))).)))	chr11:75113423-75113698(+)$1	1	99	123	11.0916
.((((((((....).))))))).)	chr14:104145831-104146108(+)$1	1	84	108	10.6775
(((((((((....)))))))))((	chr7:42974664-42974963(+)$1	1	211	235	11.4908
(((((((((.....))))))))))	chr17:74732044-74732300(-)$1	1	174	198	7.7231
(((...(((....)))))))))))	chr16:2014642-2014875(-)$1	1	128	152	9.0729
(((.(((((....))))..).)))	chr15:45008481-45008722(+)$1	1	197	221	9.5493
.(((.((((....)))))))....	chr4:152020794-152021049(+)$1	1	137	161	9.4584
((((((.(((...)))..))))))	chr1:33478584-33478882(-)$1	1	127	151	9.0317
(.((((.((....)).)))).)))	chr1:25570455-25570717(-)$1	1	234	258	9.3467
(((((.((((...)))).))))))	chr19:51307649-51307908(-)$1	1	19	43	8.1498
(((((((......)))))))..))	chr3:3189804-3190067(+)$1	1	200	224	7.7746
(((((((((....)))).))))))	chr12:132195918-132196167(+)$1	1	215	239	8.9121
((.((((((....)))))))))..	chr11:85372497-85372753(-)$1	1	45	69	8.8282
(((.(((((....))))))))(((	chr12:9907049-9907258(-)$1	1	150	174	9.3750
((((((.((....)).))))))))	chr12:98991741-98992015(+)$1	1	209	233	9.8832
(.(((((((....))))))).)))	chr5:180664426-180664677(-)$1	1	196	220	11.3751
(.(((((((....))))))).)))	chr11:61732574-61732821(-)$1	1	185	209	11.3751
((((((.((....)))))))))))	chr6:160169357-160169583(+)$1	1	87	111	12.2685
((.(((.((....)).))))))))	chr4:83276240-83276532(-)$1	1	113	137	10.7346
.(((((.((....)).))).))((	chr6:31509554-31509798(-)$1	1	35	59	8.8415

#PSSM
c : 0.21	f : 0.18	i : 0.15	g : 0.09	! : 0.06	e : 0.06	[ : 0.06	= : 0.06	h : 0.03	# : 0.03	d : 0.03	: : 0.03	
c : 0.18	[ : 0.15	f : 0.12	i : 0.12	g : 0.09	a : 0.06	! : 0.06	e : 0.06	= : 0.06	h : 0.03	# : 0.03	b : 0.03	
g : 0.21	c : 0.15	[ : 0.12	i : 0.12	f : 0.09	! : 0.06	b : 0.06	= : 0.06	a : 0.03	h : 0.03	e : 0.03	d : 0.03	
g : 0.21	f : 0.15	c : 0.15	i : 0.12	[ : 0.09	d : 0.06	b : 0.06	= : 0.06	! : 0.03	h : 0.03	" : 0.03	
g : 0.21	f : 0.15	i : 0.12	c : 0.09	e : 0.06	d : 0.06	" : 0.06	[ : 0.06	= : 0.06	! : 0.03	b : 0.03	h : 0.03	a : 0.03	
g : 0.21	d : 0.18	f : 0.12	c : 0.09	i : 0.09	e : 0.06	" : 0.06	= : 0.06	! : 0.03	a : 0.03	h : 0.03	[ : 0.03	
[ : 0.24	d : 0.18	g : 0.18	c : 0.12	e : 0.06	f : 0.06	i : 0.06	! : 0.03	" : 0.03	= : 0.03	
b : 0.30	c : 0.15	d : 0.15	g : 0.15	e : 0.06	f : 0.06	i : 0.06	= : 0.03	o : 0.03	
b : 0.30	c : 0.15	d : 0.15	g : 0.12	e : 0.06	f : 0.06	i : 0.06	= : 0.03	a : 0.03	o : 0.03	
m : 0.87	n : 0.03	c : 0.03	d : 0.03	o : 0.03	
m : 0.87	l : 0.06	n : 0.03	o : 0.03	
m : 0.87	l : 0.06	n : 0.03	o : 0.03	
m : 0.87	l : 0.06	n : 0.03	o : 0.03	
b : 0.30	c : 0.15	d : 0.15	g : 0.15	e : 0.06	f : 0.06	= : 0.03	a : 0.03	i : 0.03	n : 0.03	
b : 0.30	c : 0.15	d : 0.15	g : 0.15	e : 0.06	f : 0.06	i : 0.06	= : 0.03	] : 0.03	
g : 0.18	] : 0.18	c : 0.15	d : 0.15	e : 0.06	f : 0.06	= : 0.06	i : 0.06	4 : 0.03	2 : 0.03	3 : 0.03	
d : 0.18	g : 0.18	e : 0.09	f : 0.09	c : 0.09	4 : 0.06	] : 0.06	2 : 0.06	= : 0.06	i : 0.06	3 : 0.03	h : 0.03	
g : 0.21	c : 0.12	e : 0.09	2 : 0.09	f : 0.09	4 : 0.06	= : 0.06	i : 0.06	] : 0.06	b : 0.03	3 : 0.03	a : 0.03	h : 0.03	d : 0.03	
c : 0.21	g : 0.21	f : 0.12	i : 0.12	4 : 0.06	2 : 0.06	= : 0.06	b : 0.03	] : 0.03	h : 0.03	e : 0.03	d : 0.03	
g : 0.21	c : 0.15	i : 0.12	f : 0.09	d : 0.06	a : 0.06	] : 0.06	= : 0.06	3 : 0.03	4 : 0.03	b : 0.03	h : 0.03	2 : 0.03	e : 0.03	
] : 0.18	c : 0.12	f : 0.12	i : 0.12	2 : 0.09	g : 0.06	e : 0.06	b : 0.06	= : 0.06	d : 0.03	3 : 0.03	h : 0.03	4 : 0.03	
c : 0.18	g : 0.15	f : 0.15	i : 0.12	d : 0.06	2 : 0.06	] : 0.06	= : 0.06	3 : 0.03	e : 0.03	h : 0.03	4 : 0.03	b : 0.03	
c : 0.18	f : 0.18	i : 0.15	g : 0.12	d : 0.12	= : 0.06	e : 0.03	a : 0.03	h : 0.03	] : 0.03	4 : 0.03	2 : 0.03	
c : 0.18	f : 0.18	g : 0.12	i : 0.12	d : 0.12	] : 0.06	= : 0.06	e : 0.03	h : 0.03	b : 0.03	4 : 0.03	2 : 0.03	

#score	326.4752638769243
#seq	33
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF121XLA_HNRNPA1_transcript_m3_run1.txt

#BEAR
ddddnnnnndddd	chr11:65272445-65272652(+)$1	207	181	194	7.5179
[ddddlllddddi	chr11:2704730-2704983(-)$1	253	53	66	8.3910
ddddnnnnndddd	chr11:65272424-65272644(+)$1	220	202	215	7.5179
dddddmmmmdddd	chr17:41608560-41608814(-)$1	254	238	251	8.8795
ddd[ammmmaddd	chrX:132992328-132992595(-)$1	267	48	61	7.2664
:ddddmmmmdddd	chr11:93467440-93467711(-)$1	271	44	57	8.3002
&ddddmmmmdddd	chr11:65273123-65273347(+)$1	224	104	117	8.8112
[ddddlllddddc	chrX:133009688-133009967(-)$1	279	54	67	8.4558
[ddddmmmmdddd	chr2:101473245-101473552(+)$1	307	210	223	9.4017
[ddddmmmmdddd	chrX:132886520-132886838(-)$1	318	172	185	9.4017
Eddddmmmmdddd	chr14:21725813-21726103(-)$1	290	14	27	8.2063
!ddddmmmmdddd	chrX:132718293-132718583(-)$1	290	13	26	9.3522
[ddddllldddd]	chr16:50617784-50618085(+)$1	301	42	55	8.4017
%ddddmmmmdddd	chr2:42397674-42397941(+)$1	267	159	172	8.7980
dddoooooodddd	chr11:65193108-65193327(+)$1	219	205	218	7.0647
[ddddllldddd]	chr14:89668320-89668593(-)$1	273	219	232	8.4017
[ddddnnnnnddd	chrX:153628243-153628492(+)$1	249	218	231	8.1697
[ddddoooooodd	chr3:30734709-30734974(+)$1	265	174	187	7.8720
ddddnnnnndddd	chr17:53361182-53361438(+)$1	256	197	210	7.5179
eddddoooooodd	chr6:119610903-119611175(-)$1	272	11	24	7.2749
ddddnnnnndddd	chrX:133019010-133019282(-)$1	272	87	100	7.5179
[ddddllldddd]	chr2:153198308-153198641(+)$1	333	94	107	8.4017
[ddddnnnnnddd	chr12:103246728-103246956(-)$1	228	6	19	8.1697
cddddmmmmdddd	chr12:9234979-9235258(-)$1	279	145	158	8.9364
ddddooooooddd	chr14:23448929-23449206(-)$1	277	247	260	7.4899
!ddddnnnnnddd	chr20:47900500-47900810(+)$1	310	282	295	8.1202
:ddddmmmmdddd	chr7:26230300-26230561(-)$1	261	7	20	8.3002
[ddddnnnnnddd	chr11:2698198-2698486(-)$1	288	195	208	8.1697
"ddddmmmmdddd	chr5:27483566-27483840(+)$1	274	133	146	9.2911
ccddddllldddd	chr3:48754018-48754254(-)$1	236	18	31	7.4661
:ddddmmmmdddd	chr11:64542457-64542759(-)$1	302	271	284	8.3002
[ddddllldddd]	chr21:46195716-46195925(-)$1	209	42	55	8.4017
%ddddmmmmdddd	chr12:53435280-53435522(+)$1	242	116	129	8.7980
[ddddllldddd]	chr11:65192493-65192770(+)$1	277	211	224	8.4017
cddddoooooodd	chr3:30726752-30727017(+)$1	265	148	161	7.4066
[ddddoooooodd	chr16:50585423-50585679(+)$1	256	57	70	7.8720
#ddddllldddd4	chr7:26230121-26230402(-)$1	281	49	62	8.2925
!ddddmmmmdddd	chrX:70767303-70767583(+)$1	280	255	268	9.3522
:ddddmmmmdddd	chr3:171777675-171777972(+)$1	297	10	23	8.3002
[ddddmmmmdddd	chrX:133028984-133029229(-)$1	245	29	42	9.4017
:ddddmmmmdddd	chrX:133022745-133023066(-)$1	321	212	225	8.3002
'ddddmmmmdddd	chr14:95086827-95087090(+)$1	263	22	35	8.7290
ddddnnnnndddd	chr20:42088156-42088431(+)$1	275	72	85	7.5179
[ddddnnnnnddd	chr11:65269113-65269334(+)$1	221	45	58	8.1697
[ddddmmmmdddd	chr12:9233944-9234207(-)$1	263	144	157	9.4017
"ddddmmmmdddd	chr20:30298439-30298727(-)$1	288	118	131	9.2911
cddddmmmmdddd	chr3:48754004-48754218(-)$1	214	18	31	8.9364

#otherMatches

#Seq PSSM
GGGCGCUAAGCCU	chr11:65272445-65272652(+)$1	207	181	194	7.5179
GAGUCCCAGGCUA	chr11:2704730-2704983(-)$1	253	53	66	8.3910
GGGCGCUAAGCCU	chr11:65272424-65272644(+)$1	220	202	215	7.5179
GCUAGAACUUUAG	chr17:41608560-41608814(-)$1	254	238	251	8.8795
CAGACUAAUGCUG	chrX:132992328-132992595(-)$1	267	48	61	7.2664
UUUCUGAAAAGAA	chr11:93467440-93467711(-)$1	271	44	57	8.3002
CAGCUAAGUAGCU	chr11:65273123-65273347(+)$1	224	104	117	8.8112
AUAUUUUGAAUGA	chrX:133009688-133009967(-)$1	279	54	67	8.4558
CAAGCACAAGCUU	chr2:101473245-101473552(+)$1	307	210	223	9.4017
AAUCUCGGGAGAU	chrX:132886520-132886838(-)$1	318	172	185	9.4017
GGUAAAAUGUUAC	chr14:21725813-21726103(-)$1	290	14	27	8.2063
cgugccacugcac	chrX:132718293-132718583(-)$1	290	13	26	9.3522
GCAAACCCUUUGA	chr16:50617784-50618085(+)$1	301	42	55	8.4017
AACGCAGUUGUGU	chr2:42397674-42397941(+)$1	267	159	172	8.7980
AAAUAACCUUUUG	chr11:65193108-65193327(+)$1	219	205	218	7.0647
UGGAAUCUUUCCU	chr14:89668320-89668593(-)$1	273	219	232	8.4017
AUGAGUAAGUCUU	chrX:153628243-153628492(+)$1	249	218	231	8.1697
CAACAAAGAAGUG	chr3:30734709-30734974(+)$1	265	174	187	7.8720
ACGUGCUUUGCGU	chr17:53361182-53361438(+)$1	256	197	210	7.5179
acuaaggguuguu	chr6:119610903-119611175(-)$1	272	11	24	7.2749
GCUGACCAAUAGU	chrX:133019010-133019282(-)$1	272	87	100	7.5179
UCAGAUAAUCUGU	chr2:153198308-153198641(+)$1	333	94	107	8.4017
acauuaugcagau	chr12:103246728-103246956(-)$1	228	6	19	8.1697
aguuggugacaac	chr12:9234979-9235258(-)$1	279	145	158	8.9364
AGGCCAACGUGCC	chr14:23448929-23449206(-)$1	277	247	260	7.4899
augcccagaaggc	chr20:47900500-47900810(+)$1	310	282	295	8.1202
UUGUGUAUUCACA	chr7:26230300-26230561(-)$1	261	7	20	8.3002
UGCUGUUUUUUAG	chr11:2698198-2698486(-)$1	288	195	208	8.1697
AAAGUUAUGACUU	chr5:27483566-27483840(+)$1	274	133	146	9.2911
GAGGGGUCUCCCC	chr3:48754018-48754254(-)$1	236	18	31	7.4661
ACGGUACAUACUG	chr11:64542457-64542759(-)$1	302	271	284	8.3002
AGCUGCUUCAGUC	chr21:46195716-46195925(-)$1	209	42	55	8.4017
AUGCAUUUUUGUA	chr12:53435280-53435522(+)$1	242	116	129	8.7980
GCUACAAGGUGGG	chr11:65192493-65192770(+)$1	277	211	224	8.4017
CGGCuguguuggg	chr3:30726752-30727017(+)$1	265	148	161	7.4066
UGGCCCCAGAUGG	chr16:50585423-50585679(+)$1	256	57	70	7.8720
UGUAUCCAGUACU	chr7:26230121-26230402(-)$1	281	49	62	8.2925
AGCAGCCAGCUGU	chrX:70767303-70767583(+)$1	280	255	268	9.3522
UUGAAUGAUUUCA	chr3:171777675-171777972(+)$1	297	10	23	8.3002
ACAGUUGUAGCUG	chrX:133028984-133029229(-)$1	245	29	42	9.4017
UCAAGUCAGCUUG	chrX:133022745-133023066(-)$1	321	212	225	8.3002
aauggagagccau	chr14:95086827-95087090(+)$1	263	22	35	8.7290
AGUCUAUUUGACU	chr20:42088156-42088431(+)$1	275	72	85	7.5179
UGGAAGAGUAUUC	chr11:65269113-65269334(+)$1	221	45	58	8.1697
agacuuucuaguc	chr12:9233944-9234207(-)$1	263	144	157	9.4017
GCAAACUCAUUUG	chr20:30298439-30298727(-)$1	288	118	131	9.2911
CCCAGAUAUUUGG	chr3:48754004-48754218(-)$1	214	18	31	8.9364

#DB
((((.....))))	chr11:65272445-65272652(+)$1	1	181	194	7.5179
.((((...)))))	chr11:2704730-2704983(-)$1	1	53	66	8.3910
((((.....))))	chr11:65272424-65272644(+)$1	1	202	215	7.5179
)((((....))))	chr17:41608560-41608814(-)$1	1	238	251	8.8795
(((.(....))))	chrX:132992328-132992595(-)$1	1	48	61	7.2664
.((((....))))	chr11:93467440-93467711(-)$1	1	44	57	8.3002
.((((....))))	chr11:65273123-65273347(+)$1	1	104	117	8.8112
.((((...)))))	chrX:133009688-133009967(-)$1	1	54	67	8.4558
.((((....))))	chr2:101473245-101473552(+)$1	1	210	223	9.4017
.((((....))))	chrX:132886520-132886838(-)$1	1	172	185	9.4017
(((((....))))	chr14:21725813-21726103(-)$1	1	14	27	8.2063
.((((....))))	chrX:132718293-132718583(-)$1	1	13	26	9.3522
.((((...)))).	chr16:50617784-50618085(+)$1	1	42	55	8.4017
.((((....))))	chr2:42397674-42397941(+)$1	1	159	172	8.7980
(((......))))	chr11:65193108-65193327(+)$1	1	205	218	7.0647
.((((...)))).	chr14:89668320-89668593(-)$1	1	219	232	8.4017
.((((.....)))	chrX:153628243-153628492(+)$1	1	218	231	8.1697
.((((......))	chr3:30734709-30734974(+)$1	1	174	187	7.8720
((((.....))))	chr17:53361182-53361438(+)$1	1	197	210	7.5179
(((((......))	chr6:119610903-119611175(-)$1	1	11	24	7.2749
((((.....))))	chrX:133019010-133019282(-)$1	1	87	100	7.5179
.((((...)))).	chr2:153198308-153198641(+)$1	1	94	107	8.4017
.((((.....)))	chr12:103246728-103246956(-)$1	1	6	19	8.1697
(((((....))))	chr12:9234979-9235258(-)$1	1	145	158	8.9364
((((......)))	chr14:23448929-23449206(-)$1	1	247	260	7.4899
.((((.....)))	chr20:47900500-47900810(+)$1	1	282	295	8.1202
.((((....))))	chr7:26230300-26230561(-)$1	1	7	20	8.3002
.((((.....)))	chr11:2698198-2698486(-)$1	1	195	208	8.1697
.((((....))))	chr5:27483566-27483840(+)$1	1	133	146	9.2911
((((((...))))	chr3:48754018-48754254(-)$1	1	18	31	7.4661
.((((....))))	chr11:64542457-64542759(-)$1	1	271	284	8.3002
.((((...)))).	chr21:46195716-46195925(-)$1	1	42	55	8.4017
.((((....))))	chr12:53435280-53435522(+)$1	1	116	129	8.7980
.((((...)))).	chr11:65192493-65192770(+)$1	1	211	224	8.4017
)((((......))	chr3:30726752-30727017(+)$1	1	148	161	7.4066
.((((......))	chr16:50585423-50585679(+)$1	1	57	70	7.8720
.((((...)))).	chr7:26230121-26230402(-)$1	1	49	62	8.2925
.((((....))))	chrX:70767303-70767583(+)$1	1	255	268	9.3522
.((((....))))	chr3:171777675-171777972(+)$1	1	10	23	8.3002
.((((....))))	chrX:133028984-133029229(-)$1	1	29	42	9.4017
.((((....))))	chrX:133022745-133023066(-)$1	1	212	225	8.3002
.((((....))))	chr14:95086827-95087090(+)$1	1	22	35	8.7290
((((.....))))	chr20:42088156-42088431(+)$1	1	72	85	7.5179
.((((.....)))	chr11:65269113-65269334(+)$1	1	45	58	8.1697
.((((....))))	chr12:9233944-9234207(-)$1	1	144	157	9.4017
.((((....))))	chr20:30298439-30298727(-)$1	1	118	131	9.2911
(((((....))))	chr3:48754004-48754218(-)$1	1	18	31	8.9364

#PSSM
[ : 0.36	d : 0.19	: : 0.10	c : 0.08	! : 0.06	% : 0.04	" : 0.04	& : 0.02	E : 0.02	e : 0.02	# : 0.02	' : 0.02	
d : 0.97	c : 0.02	
d : 1.00	
d : 0.95	[ : 0.02	o : 0.02	
d : 0.82	n : 0.10	o : 0.04	a : 0.02	
m : 0.46	n : 0.21	l : 0.17	o : 0.12	d : 0.02	
m : 0.46	n : 0.21	l : 0.19	o : 0.12	
m : 0.46	n : 0.21	l : 0.19	o : 0.12	
m : 0.46	n : 0.21	d : 0.17	o : 0.12	l : 0.02	
d : 0.76	n : 0.10	o : 0.10	a : 0.02	
d : 0.91	o : 0.08	
d : 1.00	
d : 0.82	] : 0.10	i : 0.02	c : 0.02	4 : 0.02	

#score	391.7407769096191
#seq	47
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_transcript_m2_run2.txt

#BEAR
::::::::::::::::::::::::::::::::::::::::	chr12:123997650-123997901(-)$1	251	121	161	18.2008
::::::::::::::::::::::::::::::::::::::EE	chr20:60588791-60589059(-)$1	268	45	85	17.2300
::::::::::::::::::::::::::::::::::::::::	chr16:58926140-58926391(+)$1	251	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr16:85629169-85629414(+)$1	245	58	98	18.2008
::::::::::::::::::::::::::::::::::::::::	chr7:158575073-158575289(-)$1	216	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr6:158051507-158051753(+)$1	246	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr10:18851872-18852198(-)$1	326	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr17:40373807-40374111(-)$1	304	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr4:7029341-7029650(+)$1	309	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr1:26138892-26139187(+)$1	295	152	192	18.2008
::::::::::::::::::::::::::::::::::::::::	chr11:68584001-68584288(-)$1	287	18	58	18.2008
::::::::::::::::::::::::::::::::::::::::	chr6:170167534-170167756(+)$1	222	27	67	18.2008
::::::::::::::::::::::::::::::::::::::::	chr20:49288258-49288580(-)$1	322	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr22:49990684-49990918(-)$1	234	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr2:10452203-10452471(+)$1	268	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr21:39431774-39432030(-)$1	256	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chrX:3741228-3741517(-)$1	289	240	280	18.2008
::::::::::::::::::::::::::::::::::::::::	chr3:129040353-129040590(+)$1	237	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr1:227165768-227165994(+)$1	226	54	94	18.2008
::::::::::::::::::::::::::::::::::::::::	chrX:79931684-79931920(-)$1	236	34	74	18.2008
::::::::::::::::::::::::::::::::::::::::	chr9:80935098-80935352(+)$1	254	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr14:65232708-65232944(-)$1	236	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr13:46750817-46751130(-)$1	313	82	122	18.2008
::::::::::::::::::::::::::::::::::::::::	chr16:88086377-88086686(+)$1	309	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr2:10452340-10452643(+)$1	303	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr11:68478471-68478824(-)$1	353	16	56	18.2008
::::::::::::::::::::::::::::::::::::::::	chr16:81702325-81702578(+)$1	253	72	112	18.2008
::::::::::::::::::::::::::::::::::::::::	chr10:18847997-18848252(-)$1	255	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr16:20729281-20729542(+)$1	261	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr12:125574684-125574936(+)$1	252	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr22:39979106-39979477(+)$1	371	66	106	18.2008
::::::::::::::::::::::::::::::::::::::::	chr19:4036656-4036864(+)$1	208	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr10:94748475-94748748(+)$1	273	68	108	18.2008
::::::::::::::::::::::::::::::::::::::::	chr20:3946840-3947218(-)$1	378	56	96	18.2008
::::::::::::::::::::::::::::::::::::::::	chr8:130393474-130393696(-)$1	222	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr6:159048152-159048370(+)$1	218	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chrX:49092213-49092486(+)$1	273	64	104	18.2008
::::::::::::::::::::::::::::::::::::::::	chr16:88983354-88983573(-)$1	219	32	72	18.2008
::::::::::::::::::::::::::::::::::::::::	chr1:208038743-208039029(-)$1	286	59	99	18.2008
::::::::::::::::::::::::::::::::::::::::	chr22:48051805-48052131(+)$1	326	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr1:93784642-93784879(-)$1	237	14	54	18.2008
::::::::::::::::::::::::::::::::::::::::	chr16:88948774-88949105(-)$1	331	267	307	18.2008
::::::::::::::::::::::::::::::::::::::::	chr7:158574960-158575170(-)$1	210	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr22:50038976-50039180(-)$1	204	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr13:30133266-30133518(-)$1	252	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr17:80105926-80106167(-)$1	241	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr6:158052005-158052229(+)$1	224	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chrX:3741172-3741388(-)$1	216	104	144	18.2008
::::::::::::::::::::::::::::::::::::::::	chr1:36027144-36027397(+)$1	253	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr22:50038000-50038212(-)$1	212	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr1:10171230-10171517(+)$1	287	30	70	18.2008
::::::::::::::::::::::::::::::::::::::::	chr7:156555354-156555577(-)$1	223	13	53	18.2008
::::::::::::::::::::::::::::::::::::::::	chr22:48075447-48075703(+)$1	256	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chrX:131169842-131170132(+)$1	290	20	60	18.2008
::::::::::::::::::::::::::::::::::::::::	chr22:49898751-49899032(-)$1	281	109	149	18.2008
::::::::::::::::::::::::::::::::::::::::	chr2:231869969-231870220(+)$1	251	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr16:3863957-3864323(-)$1	366	124	164	18.2008
::::::::::::::::::::::::::::::::::::::::	chr19:4036689-4036893(+)$1	204	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr6:161615353-161615648(-)$1	295	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr11:47601353-47601601(+)$1	248	185	225	18.2008
:::::::::::::::::::::::::::::::::::::::C	chr7:53834871-53835169(-)$1	298	18	58	17.9083
::::::::::::::::::::::::::::::::::::::::	chr21:39431895-39432127(-)$1	232	164	204	18.2008
::::::::::::::::::::::::::::::::::::::::	chr5:118673656-118673981(+)$1	325	198	238	18.2008
::::::::::::::::::::::::::::::::::::::::	chr5:150487477-150487814(-)$1	337	215	255	18.2008
::::::::::::::::::::::::::::::::::::::::	chr1:176134315-176134556(-)$1	241	19	59	18.2008
::::::::::::::::::::::::::::::::::::::::	chr1:14979105-14979483(+)$1	378	102	142	18.2008
::::::::::::::::::::::::::::::::::::::::	chr7:44498306-44498576(-)$1	270	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr1:109933211-109933474(-)$1	263	53	93	18.2008
::::::::::::::::::::::::::::::::::::::::	chr1:153725443-153725695(+)$1	252	62	102	18.2008
::::::::::::::::::::::::::::::::::::::::	chrX:55042327-55042617(-)$1	290	175	215	18.2008
::::::::::::::::::::::::::::::::::::::::	chr20:33674076-33674326(-)$1	250	37	77	18.2008
::::::::::::::::::::::::::::::::::::::::	chr10:5749626-5749883(+)$1	257	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr22:50038064-50038271(-)$1	207	0	40	18.2008
::::::::::::::::::::::::::::::::::::::::	chr13:114553834-114554069(-)$1	235	0	40	18.2008

#otherMatches

#Seq PSSM
Aacacacacgacacacacauacaacacccacacagacaca	chr12:123997650-123997901(-)$1	251	121	161	18.2008
ACGGAUUcacacacacacacacacacacacacacacacac	chr20:60588791-60589059(-)$1	268	45	85	17.2300
CACCUCAACCAAAUAUAUACAACUAUGAUcccccauuacu	chr16:58926140-58926391(+)$1	251	0	40	18.2008
UUCCUCCAUCCAUCAUCUACCCAUCUACCUUUCAUCUAUU	chr16:85629169-85629414(+)$1	245	58	98	18.2008
UUCCUUCACACUCAUUCUUUGUUCUCACACUCCCACUUUC	chr7:158575073-158575289(-)$1	216	0	40	18.2008
cauucuagccacacucacacucauauauacucaccaauac	chr6:158051507-158051753(+)$1	246	0	40	18.2008
uucccuuccauucuccauuucauugccuuccauuccauac	chr10:18851872-18852198(-)$1	326	0	40	18.2008
acacacagcacacacacaccacacacagcacacacacaga	chr17:40373807-40374111(-)$1	304	0	40	18.2008
cacauccacacacaaucaccccacacacaucacacacccc	chr4:7029341-7029650(+)$1	309	0	40	18.2008
ccuacacacaaacacacacacacacacacacacacacaca	chr1:26138892-26139187(+)$1	295	152	192	18.2008
acacacguauacacacacacaccacacacacacacacaca	chr11:68584001-68584288(-)$1	287	18	58	18.2008
ACACAAACAacacacaugcacacaccacacauacauacac	chr6:170167534-170167756(+)$1	222	27	67	18.2008
aaucacccacccacccaccuacccauccauccauccaucc	chr20:49288258-49288580(-)$1	322	0	40	18.2008
aucaccauuauuaccaccaucaccaucaucaccaccacca	chr22:49990684-49990918(-)$1	234	0	40	18.2008
ccaucauuaucaccauucuccaucaccaucaucacuauca	chr2:10452203-10452471(+)$1	268	0	40	18.2008
caccaucaccauuagcaccaccaccaccaccaccaugauc	chr21:39431774-39432030(-)$1	256	0	40	18.2008
acacucauacauacacauuuacaugcucucauuuauacac	chrX:3741228-3741517(-)$1	289	240	280	18.2008
ucacauucacccacucacCAUUCCCACUCACCAGUUCACA	chr3:129040353-129040590(+)$1	237	0	40	18.2008
acacccaccaaacacccacacaucuuacccuccacacacc	chr1:227165768-227165994(+)$1	226	54	94	18.2008
CCcacacacacacaaacacauacacacacauacacacaca	chrX:79931684-79931920(-)$1	236	34	74	18.2008
acccauucacccauccacccaucuauccacccgcccauuc	chr9:80935098-80935352(+)$1	254	0	40	18.2008
auauacagacaccucacgcacaaccacacacccacauaca	chr14:65232708-65232944(-)$1	236	0	40	18.2008
cucgcucucucacacacacacacacacacacacacacaaa	chr13:46750817-46751130(-)$1	313	82	122	18.2008
ucaucaucacuaacauaaccaccuuAACAACCACUACCAC	chr16:88086377-88086686(+)$1	309	0	40	18.2008
uccaucaucacugucaucaccaucaucaucacuaucauua	chr2:10452340-10452643(+)$1	303	0	40	18.2008
cacgcacacucgacacacacacaccccacacacacucaua	chr11:68478471-68478824(-)$1	353	16	56	18.2008
AACACACAUCCAUUCACACCCACCUCACACUCACUGCCUU	chr16:81702325-81702578(+)$1	253	72	112	18.2008
auucuccauuccauuucauuccauucuccauuccauucaa	chr10:18847997-18848252(-)$1	255	0	40	18.2008
gaagaagaagaagaagaagaagaagaagaagaagaagaag	chr16:20729281-20729542(+)$1	261	0	40	18.2008
accaucauccauccaucuauccauccauccUGUCUAUACA	chr12:125574684-125574936(+)$1	252	0	40	18.2008
ccaucucuccauccauccaucuauccaacaauccauccau	chr22:39979106-39979477(+)$1	371	66	106	18.2008
caucuauacaguccacaccgucacacauccauauagucca	chr19:4036656-4036864(+)$1	208	0	40	18.2008
ucucuacaaaaaauacacacacacacacacacacacacac	chr10:94748475-94748748(+)$1	273	68	108	18.2008
UUCCCCAAacacacacacacacacacacacacacacacac	chr20:3946840-3947218(-)$1	378	56	96	18.2008
GACAACACUCACACCACCCcacauaccacucacaucacac	chr8:130393474-130393696(-)$1	222	0	40	18.2008
acacacccuugcucacacaccuuacacccucacugucaca	chr6:159048152-159048370(+)$1	218	0	40	18.2008
CACCCCCUUacacacacacacacacacacacacacacaca	chrX:49092213-49092486(+)$1	273	64	104	18.2008
AUUCCACCAGUUCUUCucuuuuuuccuuuuucuuuuuucu	chr16:88983354-88983573(-)$1	219	32	72	18.2008
AAAacacacacacacacacacacacacacacacacacaca	chr1:208038743-208039029(-)$1	286	59	99	18.2008
caccaucaccaucaucaccaucaccaucaucauuaccaaa	chr22:48051805-48052131(+)$1	326	0	40	18.2008
UAGAacacacacacacacacacacacacacacacacacac	chr1:93784642-93784879(-)$1	237	14	54	18.2008
acacagccauacacacacagccacacccacacacacagcc	chr16:88948774-88949105(-)$1	331	267	307	18.2008
CUGUUCUCAcacucguucacucacuuguucucguucuuac	chr7:158574960-158575170(-)$1	210	0	40	18.2008
Uuccaucuacccauccaucauccacuauccacucacccac	chr22:50038976-50039180(-)$1	204	0	40	18.2008
ucacucccccucacucacauucacucccccucacucacau	chr13:30133266-30133518(-)$1	252	0	40	18.2008
uauccauccacccauccauccaucuaccauccauccaucc	chr17:80105926-80106167(-)$1	241	0	40	18.2008
ccacacucacacacacccuuacacacccacacucucacac	chr6:158052005-158052229(+)$1	224	0	40	18.2008
acacucaacacucauacauacacauuuacaugcucucauu	chrX:3741172-3741388(-)$1	216	104	144	18.2008
acacaGUAACCUCCCACUCAAACGCUCCCCCCAAUACACA	chr1:36027144-36027397(+)$1	253	0	40	18.2008
cccauccaccauccacccgucauuccaucuacccauccac	chr22:50038000-50038212(-)$1	212	0	40	18.2008
cuccacauacuacacacacacacaccacgcgcuacacaca	chr1:10171230-10171517(+)$1	287	30	70	18.2008
acacacacacacacacacacacacucacacucacacacuu	chr7:156555354-156555577(-)$1	223	13	53	18.2008
ccauccauccacacacccauccauccacccauccauccau	chr22:48075447-48075703(+)$1	256	0	40	18.2008
acacacacacacacacacacacacacacacacacacacac	chrX:131169842-131170132(+)$1	290	20	60	18.2008
caucauuaucaucaccauuaccaucauuucuaccaucacc	chr22:49898751-49899032(-)$1	281	109	149	18.2008
aucaucauuaccaucaucaccaucaccaucaucaucacca	chr2:231869969-231870220(+)$1	251	0	40	18.2008
aaacacacacacacacacacacacacacacacacUAAACA	chr16:3863957-3864323(-)$1	366	124	164	18.2008
uaguccacaccaucauacacacacacaucucuacagucca	chr19:4036689-4036893(+)$1	204	0	40	18.2008
cacauacauagacacacauacauacauacacauauauaca	chr6:161615353-161615648(-)$1	295	0	40	18.2008
acacacacacacacacacacacacacacacacacacacac	chr11:47601353-47601601(+)$1	248	185	225	18.2008
aaucuuaaaacaugcuacaacagaaaugaacuucaaugac	chr7:53834871-53835169(-)$1	298	18	58	17.9083
ccaucaccaauaucaccaccaucaccaccaccaaccauca	chr21:39431895-39432127(-)$1	232	164	204	18.2008
ACUUUGacacacacacacacacacacacacacacacacac	chr5:118673656-118673981(+)$1	325	198	238	18.2008
acacauacacacaucacacacagaacacauuauauauaca	chr5:150487477-150487814(-)$1	337	215	255	18.2008
acacacacacacacacacacacacacacacacacacacac	chr1:176134315-176134556(-)$1	241	19	59	18.2008
uucauucauccacccauccguuaauccauccauccauuca	chr1:14979105-14979483(+)$1	378	102	142	18.2008
acacacacacacacacacacacacacacacacacacacac	chr7:44498306-44498576(-)$1	270	0	40	18.2008
cacacacacacacacacacacacacacauacacacacaca	chr1:109933211-109933474(-)$1	263	53	93	18.2008
CCGCUCCCCUCCUacacacacacacacacacacacacaca	chr1:153725443-153725695(+)$1	252	62	102	18.2008
cacacacacacacacacacacacacacacacacacacaca	chrX:55042327-55042617(-)$1	290	175	215	18.2008
acacacacauacacacacacacacacacacacacacacac	chr20:33674076-33674326(-)$1	250	37	77	18.2008
cucucucucugucucCCCCCCCAACCCCACACACACACAU	chr10:5749626-5749883(+)$1	257	0	40	18.2008
auccaccauccacccaucauuccauccacccauccaccau	chr22:50038064-50038271(-)$1	207	0	40	18.2008
acccacucauccauccacucauucauuuguucauucaucc	chr13:114553834-114554069(-)$1	235	0	40	18.2008

#DB
........................................	chr12:123997650-123997901(-)$1	1	121	161	18.2008
......................................((	chr20:60588791-60589059(-)$1	1	45	85	17.2300
........................................	chr16:58926140-58926391(+)$1	1	0	40	18.2008
........................................	chr16:85629169-85629414(+)$1	1	58	98	18.2008
........................................	chr7:158575073-158575289(-)$1	1	0	40	18.2008
........................................	chr6:158051507-158051753(+)$1	1	0	40	18.2008
........................................	chr10:18851872-18852198(-)$1	1	0	40	18.2008
........................................	chr17:40373807-40374111(-)$1	1	0	40	18.2008
........................................	chr4:7029341-7029650(+)$1	1	0	40	18.2008
........................................	chr1:26138892-26139187(+)$1	1	152	192	18.2008
........................................	chr11:68584001-68584288(-)$1	1	18	58	18.2008
........................................	chr6:170167534-170167756(+)$1	1	27	67	18.2008
........................................	chr20:49288258-49288580(-)$1	1	0	40	18.2008
........................................	chr22:49990684-49990918(-)$1	1	0	40	18.2008
........................................	chr2:10452203-10452471(+)$1	1	0	40	18.2008
........................................	chr21:39431774-39432030(-)$1	1	0	40	18.2008
........................................	chrX:3741228-3741517(-)$1	1	240	280	18.2008
........................................	chr3:129040353-129040590(+)$1	1	0	40	18.2008
........................................	chr1:227165768-227165994(+)$1	1	54	94	18.2008
........................................	chrX:79931684-79931920(-)$1	1	34	74	18.2008
........................................	chr9:80935098-80935352(+)$1	1	0	40	18.2008
........................................	chr14:65232708-65232944(-)$1	1	0	40	18.2008
........................................	chr13:46750817-46751130(-)$1	1	82	122	18.2008
........................................	chr16:88086377-88086686(+)$1	1	0	40	18.2008
........................................	chr2:10452340-10452643(+)$1	1	0	40	18.2008
........................................	chr11:68478471-68478824(-)$1	1	16	56	18.2008
........................................	chr16:81702325-81702578(+)$1	1	72	112	18.2008
........................................	chr10:18847997-18848252(-)$1	1	0	40	18.2008
........................................	chr16:20729281-20729542(+)$1	1	0	40	18.2008
........................................	chr12:125574684-125574936(+)$1	1	0	40	18.2008
........................................	chr22:39979106-39979477(+)$1	1	66	106	18.2008
........................................	chr19:4036656-4036864(+)$1	1	0	40	18.2008
........................................	chr10:94748475-94748748(+)$1	1	68	108	18.2008
........................................	chr20:3946840-3947218(-)$1	1	56	96	18.2008
........................................	chr8:130393474-130393696(-)$1	1	0	40	18.2008
........................................	chr6:159048152-159048370(+)$1	1	0	40	18.2008
........................................	chrX:49092213-49092486(+)$1	1	64	104	18.2008
........................................	chr16:88983354-88983573(-)$1	1	32	72	18.2008
........................................	chr1:208038743-208039029(-)$1	1	59	99	18.2008
........................................	chr22:48051805-48052131(+)$1	1	0	40	18.2008
........................................	chr1:93784642-93784879(-)$1	1	14	54	18.2008
........................................	chr16:88948774-88949105(-)$1	1	267	307	18.2008
........................................	chr7:158574960-158575170(-)$1	1	0	40	18.2008
........................................	chr22:50038976-50039180(-)$1	1	0	40	18.2008
........................................	chr13:30133266-30133518(-)$1	1	0	40	18.2008
........................................	chr17:80105926-80106167(-)$1	1	0	40	18.2008
........................................	chr6:158052005-158052229(+)$1	1	0	40	18.2008
........................................	chrX:3741172-3741388(-)$1	1	104	144	18.2008
........................................	chr1:36027144-36027397(+)$1	1	0	40	18.2008
........................................	chr22:50038000-50038212(-)$1	1	0	40	18.2008
........................................	chr1:10171230-10171517(+)$1	1	30	70	18.2008
........................................	chr7:156555354-156555577(-)$1	1	13	53	18.2008
........................................	chr22:48075447-48075703(+)$1	1	0	40	18.2008
........................................	chrX:131169842-131170132(+)$1	1	20	60	18.2008
........................................	chr22:49898751-49899032(-)$1	1	109	149	18.2008
........................................	chr2:231869969-231870220(+)$1	1	0	40	18.2008
........................................	chr16:3863957-3864323(-)$1	1	124	164	18.2008
........................................	chr19:4036689-4036893(+)$1	1	0	40	18.2008
........................................	chr6:161615353-161615648(-)$1	1	0	40	18.2008
........................................	chr11:47601353-47601601(+)$1	1	185	225	18.2008
.......................................(	chr7:53834871-53835169(-)$1	1	18	58	17.9083
........................................	chr21:39431895-39432127(-)$1	1	164	204	18.2008
........................................	chr5:118673656-118673981(+)$1	1	198	238	18.2008
........................................	chr5:150487477-150487814(-)$1	1	215	255	18.2008
........................................	chr1:176134315-176134556(-)$1	1	19	59	18.2008
........................................	chr1:14979105-14979483(+)$1	1	102	142	18.2008
........................................	chr7:44498306-44498576(-)$1	1	0	40	18.2008
........................................	chr1:109933211-109933474(-)$1	1	53	93	18.2008
........................................	chr1:153725443-153725695(+)$1	1	62	102	18.2008
........................................	chrX:55042327-55042617(-)$1	1	175	215	18.2008
........................................	chr20:33674076-33674326(-)$1	1	37	77	18.2008
........................................	chr10:5749626-5749883(+)$1	1	0	40	18.2008
........................................	chr22:50038064-50038271(-)$1	1	0	40	18.2008
........................................	chr13:114553834-114554069(-)$1	1	0	40	18.2008

#PSSM
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.98	E : 0.01	
: : 0.97	E : 0.01	C : 0.01	

#score	1345.6018479126049
#seq	74
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_CDS_m3_run1.txt

#BEAR
==========oooooo==========:	chr2:85776919-85777200(-)$1	281	217	244	10.6128
c[a[gggggggnnnnnggggggg]a]c	chr1:15900001-15900313(-)$1	312	204	231	12.5787
ddddgggggggnnnnngggggggeeee	chr11:77811948-77812320(-)$1	372	160	187	11.6898
fffa[a!!cccnnnnnccc22a]a]ff	chr17:78092468-78092699(+)$1	231	174	201	13.1238
ggggggg[bboooooobb]ggggggg:	chr11:77783981-77784243(-)$1	262	157	184	9.7957
ffff"""ddddnnnnndddd333ffff	chr4:74321249-74321464(+)$1	215	30	57	10.4963
gggggg!!cccnnnnnccc22gggggg	chr15:75212667-75212883(-)$1	216	182	209	13.9973
[eeeee"""cccmmmmccc333eeeee	chr17:61908605-61908858(+)$1	253	82	109	9.0457
eeee[bb[cccooooooccc]bb]eee	chr2:101622324-101622540(+)$1	216	37	64	9.4677
ggggggg!!bbnnnnnbbggggggg]d	chr19:54606330-54606597(+)$1	267	62	89	13.2279
$$eeeee!!bboooooobb22eeeee8	chr14:94844710-94844947(-)$1	237	189	216	9.2503
!ggggggg[bbnnnnnbb]ggggggg2	chr5:135391381-135391606(+)$1	225	99	126	12.9913
DDggggggg[annnnna]gggggggdd	chr14:105953514-105953737(+)$1	223	95	122	10.1262
ddiiiiiiiiinnnnniiiiiiiii33	chr19:50028624-50028847(+)$1	223	3	30	12.7738
hhhdddd!!bbnnnnnbb22dddd]hh	chr14:50052653-50052864(-)$1	211	133	160	10.9426
a[eeeee!!bbnnnnnbb333eeeee]	chr14:78174401-78174651(+)$1	250	141	168	13.1945
dd!!gggggggnnnnngggggggdddd	chr20:23618316-23618556(-)$1	240	109	136	11.6497
gggggggddddnnnnndddd]gggggg	chr2:130947969-130948196(+)$1	227	174	201	11.1129
"""dddd[cccnnnnnccc]ddddddd	chr16:83842809-83843131(+)$1	322	120	147	11.9793
ddbb[a!!cccnnnnnccc]a]bb22d	chr5:140026741-140026990(-)$1	249	39	66	11.9317
eeeee!!ddddnnnnnddddeeeeebb	chr19:18702859-18703146(+)$1	287	72	99	9.8574
!!gggggggbboooooobb]ggggggg	chr3:128339172-128339425(-)$1	253	201	228	10.7102
bbffffff[bbnnnnnbbffffff]bb	chr12:56549200-56549472(+)$1	272	4	31	10.2984
ggggggg[cccnnnnnccc]ggggggg	chr1:228336402-228336724(+)$1	322	281	308	13.8581
c[bb[bb[cccnnnnnccc]bb]bbcc	chr19:54705254-54705460(+)$1	206	48	75	11.6772
[a[ccc"""cccmmmmccc]ccc]a]b	chr19:18418216-18418458(-)$1	242	125	152	8.7913
ggggiiiiiiiiillliiiiiiiii33	chr1:156262779-156263041(-)$1	262	109	136	9.5743
!!eeeee"""annnnna333eeeeeff	chr17:79910752-79911019(-)$1	267	212	239	12.5728
eee"""ccc[annnnna]ccc]eeeee	chr11:8704650-8704863(+)$1	213	89	116	11.8268
==========oooooo==========:	chr22:24236616-24236868(+)$1	252	136	163	10.6128
::ccc"""cccnnnnnccc333ccc::	chr2:85806106-85806357(+)$1	251	82	109	10.0167
f!!dddd[a[annnnna]a]dddd444	chr20:60962340-60962544(+)$1	204	100	127	11.7959
eeeebb!!cccnnnnnccc22bb]eee	chr17:80197179-80197421(+)$1	242	15	42	12.2418
a[bb[ffffffnnnnnffffff]bb]a	chr11:75112590-75112811(+)$1	221	86	113	10.1360
cc"""ffffffnnnnnffffffccc]b	chr17:7004756-7005036(-)$1	280	117	144	10.6082
ffff"""cccooooooccc333fffff	chr7:149575728-149575980(+)$1	252	62	89	10.4336
cccbbffffffnnnnnffffff333bb	chr11:116701389-116701591(+)$1	202	81	108	9.9271
"""dddd[cccnnnnnccc]dddd333	chr13:21714633-21714883(+)$1	250	51	78	12.6835
============mmmm===========	chr2:241070278-241070592(-)$1	314	282	309	9.5319
e[bb[bb[cccnnnnnccc]bbbb]ee	chr11:838034-838271(+)$1	237	200	227	11.7236
e[bb"""bbbbnnnnnbb]bb333bbe	chr1:120286551-120286805(+)$1	254	67	94	10.5659
===========lll===========bb	chr1:44441883-44442123(+)$1	240	107	134	10.0892
c"""gggggggnnnnngggggggccc2	chr19:36641084-36641326(+)$1	242	40	67	12.3155
ffffff!!cccnnnnnccc22ffffff	chr12:96254844-96255090(+)$1	246	61	88	12.5019
$$eeeee!!bboooooobb22eeeee8	chr14:94844690-94844900(-)$1	210	142	169	9.2503
eeeee!!cccooooooccc22eeeee]	chr15:80478370-80478749(+)$1	379	218	245	10.4084
cccdddd[cccnnnnnccc]dddd:ee	chr20:2443235-2443480(-)$1	245	151	178	11.2789
c"""ccc!!bbnnnnnbb]ccc333cc	chr14:103574588-103574858(+)$1	270	18	45	12.7103
fffff####aooooooa4444ffffff	chr12:49444062-49444378(-)$1	316	160	187	9.5208
ccc####cccooooooccc333ccc:b	chr6:158613080-158613484(+)$1	404	99	126	9.8477
eegggggggbbnnnnnbb]ggggggg2	chr15:44085118-44085346(+)$1	228	137	164	12.6073
eeeee[bb[bbnnnnnbb]bb333eee	chr14:78183741-78183992(+)$1	251	13	40	10.9883
cccdddd[cccnnnnnccc]dddd:ee	chr20:2443181-2443435(-)$1	254	106	133	11.2789
hhhdddd!!bbnnnnnbb22dddd]hh	chr14:50052567-50052769(-)$1	202	38	65	10.9426
iiiiiiii"""bblllbb333iiiiii	chr20:60962867-60963071(+)$1	204	102	129	9.3833
!!a[ccc[cccooooooccc]ccc]a2	chr17:34171835-34172136(+)$1	301	133	160	10.6385

#otherMatches

#Seq PSSM
GAAAAAAAUUCUCAAAAGUUUUUUUUU	chr2:85776919-85777200(-)$1	281	217	244	10.6128
UGACAAGUUCUCAAGAAGAACUUAUGA	chr1:15900001-15900313(-)$1	312	204	231	12.5787
AUUCCCUUUCACCUCCUGGAAGGUGAA	chr11:77811948-77812320(-)$1	372	160	187	11.6898
AGCCGUGGUGCAGGGGGCAGAAGGUGC	chr17:78092468-78092699(+)$1	231	174	201	13.1238
UUUGGAUAUAUGAAAUUACAUCCAGAG	chr11:77783981-77784243(-)$1	262	157	184	9.7957
AUAGAACCAGUUACUUACUGCACCUAU	chr4:74321249-74321464(+)$1	215	30	57	10.4963
AUUUGAACAAGUUUUCCUUUAUUGAGU	chr15:75212667-75212883(-)$1	216	182	209	13.9973
UUAUCAUGGCUACUAAUAGGAUUGAUA	chr17:61908605-61908858(+)$1	253	82	109	9.0457
AGUGGCUGCUUGGUUGAAAGGAGGCAU	chr2:101622324-101622540(+)$1	216	37	64	9.4677
AGGGGUGACGCUUCUUGCCACCCCUUC	chr19:54606330-54606597(+)$1	267	62	89	13.2279
UCCAUCCCUGGCCCCCUCCCUGGAUGA	chr14:94844710-94844947(-)$1	237	189	216	9.2503
UCCUGAAGGGAGACAAUCGCUUUAGGU	chr5:135391381-135391606(+)$1	225	99	126	12.9913
CCAAGUGCAACAAGGAGGUGUACUUCG	chr14:105953514-105953737(+)$1	223	95	122	10.1262
GAGGGACUGGGAGCGCCCCAGUUCUGU	chr19:50028624-50028847(+)$1	223	3	30	12.7738
AUAUGGCCUCAAUAUGUGCCGCCAGUG	chr14:50052653-50052864(-)$1	211	133	160	10.9426
CGGCGUCGAGUGAGUGAUGGAGAUGUG	chr14:78174401-78174651(+)$1	250	141	168	13.1945
CCCUGGCCGUGAGCCCCGCGGCCGGCU	chr20:23618316-23618556(-)$1	240	109	136	11.6497
CCAGGCUGCCCAAGGGGGGCGGGCCUG	chr2:130947969-130948196(+)$1	227	174	201	11.1129
AUUGAUGAUCUGGAAAAGAAUAUCGCG	chr16:83842809-83843131(+)$1	322	120	147	11.9793
GCAGGGACUUCAUUGAGAAACGCUACG	chr5:140026741-140026990(-)$1	249	39	66	11.9317
UGGAGGCGAUCAGCGAGGUUCUCCAGG	chr19:18702859-18703146(+)$1	287	72	99	9.8574
GGUGCCUGCACUUUGCUGUGGCAGGCA	chr3:128339172-128339425(-)$1	253	201	228	10.7102
CUGAAGUCGCGGCGUGUGGACUUUGAG	chr12:56549200-56549472(+)$1	272	4	31	10.2984
GGGGCCCCAUCAUCCCGAUCGGGCCCU	chr1:228336402-228336724(+)$1	322	281	308	13.8581
UUGUUGUGCCAGUACGUGGGACUACAC	chr19:54705254-54705460(+)$1	206	48	75	11.6772
CCGGGCACAGGCAGAGGCCAGCCAGAG	chr19:18418216-18418458(-)$1	242	125	152	8.7913
CAGUGGCCCUGGGUGCCCCAGGGCUCA	chr1:156262779-156263041(-)$1	262	109	136	9.5743
GAGGGGCCCAGACACCCGCUGCCCCAG	chr17:79910752-79911019(-)$1	267	212	239	12.5728
UCCACACAGCCAUCCAGACUGAGGAAG	chr11:8704650-8704863(+)$1	213	89	116	11.8268
CCGGCAAGCCCCCCCAGGUUUGCCGGG	chr22:24236616-24236868(+)$1	252	136	163	10.6128
GAGGGAGUUAAGAAUAUUAUGACCCAG	chr2:85806106-85806357(+)$1	251	82	109	10.0167
AAUGGUAAGCGCCCCCCACAUGCCUCU	chr20:60962340-60962544(+)$1	204	100	127	11.7959
GCAGACAGGCUGGCAGGGCAGGUGCUG	chr17:80197179-80197421(+)$1	242	15	42	12.2418
CCCCCAGAACACAGAAUGUUCUUGGUG	chr11:75112590-75112811(+)$1	221	86	113	10.1360
GGAAUGCCACCGGCGAGGUGGCCUGAC	chr17:7004756-7005036(-)$1	280	117	144	10.6082
GCUGAACCCCCUGUUCGGGCCCCAGCU	chr7:149575728-149575980(+)$1	252	62	89	10.4336
GCCCUGCUCUUUCCUCAGGAGCUUCAG	chr11:116701389-116701591(+)$1	202	81	108	9.9271
AGUGCUCAUGCUCGCUGCAGGGGUCGG	chr13:21714633-21714883(+)$1	250	51	78	12.6835
UGAUUCUGUUCAUCUCUGAACGGGAUC	chr2:241070278-241070592(-)$1	314	282	309	9.5319
UGAGACCACUGAGUACCAGGGGCUGGG	chr11:838034-838271(+)$1	237	200	227	11.7236
GCGUGGAAGCAGCAUGUGACUGAAGCC	chr1:120286551-120286805(+)$1	254	67	94	10.5659
GCUCCUCCAUCAUUGGUGGAGGAGUGA	chr1:44441883-44442123(+)$1	240	107	134	10.0892
UCACGGUUGCUACCCAGGCGGCCAAGC	chr19:36641084-36641326(+)$1	242	40	67	12.3155
GAAAAAUAAUUAAUUAGAUCCUUUUUU	chr12:96254844-96255090(+)$1	246	61	88	12.5019
UCCAUCCCUGGCCCCCUCCCUGGAUGA	chr14:94844690-94844900(-)$1	210	142	169	9.2503
ACCCCUUUCAACCCUGUGACUGGGGUC	chr15:80478370-80478749(+)$1	379	218	245	10.4084
UGGGCAUGCCCCCUCCGGGAAUGCGGC	chr20:2443235-2443480(-)$1	245	151	178	11.2789
CCAGAGUGACUACAGGAGGGCUGACGC	chr14:103574588-103574858(+)$1	270	18	45	12.7103
UCCCUCCCCGUUGAGUCCCAUAGGGAA	chr12:49444062-49444378(-)$1	316	160	187	9.5208
CCAGAAAUGAAAAUACUCAAUAUGGAC	chr6:158613080-158613484(+)$1	404	99	126	9.8477
CUUUCUGCUGCCGCCCGCAAGCAGAGG	chr15:44085118-44085346(+)$1	228	137	164	12.6073
ACUGACUCCCUAAUAAAGUGAUUUUCA	chr14:78183741-78183992(+)$1	251	13	40	10.9883
UGGGCAUGCCCCCUCCGGGAAUGCGGC	chr20:2443181-2443435(-)$1	254	106	133	11.2789
AUAUGGCCUCAAUAUGUGCCGCCAGUG	chr14:50052567-50052769(-)$1	202	38	65	10.9426
GGUGAGUGUUUCCCUGGGCUUUGCUCA	chr20:60962867-60963071(+)$1	204	102	129	9.3833
GGCGGCUAUGGAGGAGACCGAGGUGGG	chr17:34171835-34172136(+)$1	301	133	160	10.6385

#DB
((((((((((......)))))))))).	chr2:85776919-85777200(-)$1	1	217	244	10.6128
(.(.(((((((.....))))))).).)	chr1:15900001-15900313(-)$1	1	204	231	12.5787
))))(((((((.....)))))))((((	chr11:77811948-77812320(-)$1	1	160	187	11.6898
((((.(..(((.....)))..).).))	chr17:78092468-78092699(+)$1	1	174	201	13.1238
(((((((.((......)).))))))).	chr11:77783981-77784243(-)$1	1	157	184	9.7957
((((...((((.....))))...))))	chr4:74321249-74321464(+)$1	1	30	57	10.4963
((((((..(((.....)))..))))))	chr15:75212667-75212883(-)$1	1	182	209	13.9973
.(((((...(((....)))...)))))	chr17:61908605-61908858(+)$1	1	82	109	9.0457
((((.((.(((......))).)).)))	chr2:101622324-101622540(+)$1	1	37	64	9.4677
(((((((..((.....))))))))).)	chr19:54606330-54606597(+)$1	1	62	89	13.2279
..(((((..((......))..))))).	chr14:94844710-94844947(-)$1	1	189	216	9.2503
.(((((((.((.....)).))))))).	chr5:135391381-135391606(+)$1	1	99	126	12.9913
(((((((((.(.....).)))))))((	chr14:105953514-105953737(+)$1	1	95	122	10.1262
(((((((((((.....)))))))))..	chr19:50028624-50028847(+)$1	1	3	30	12.7738
(((((((..((.....))..)))).))	chr14:50052653-50052864(-)$1	1	133	160	10.9426
(.(((((..((.....))...))))).	chr14:78174401-78174651(+)$1	1	141	168	13.1945
((..(((((((.....)))))))))))	chr20:23618316-23618556(-)$1	1	109	136	11.6497
(((((((((((.....)))).))))))	chr2:130947969-130948196(+)$1	1	174	201	11.1129
...((((.(((.....))).)))))))	chr16:83842809-83843131(+)$1	1	120	147	11.9793
((((.(..(((.....))).).))..)	chr5:140026741-140026990(-)$1	1	39	66	11.9317
(((((..((((.....)))))))))))	chr19:18702859-18703146(+)$1	1	72	99	9.8574
..(((((((((......)).)))))))	chr3:128339172-128339425(-)$1	1	201	228	10.7102
((((((((.((.....)))))))).))	chr12:56549200-56549472(+)$1	1	4	31	10.2984
(((((((.(((.....))).)))))))	chr1:228336402-228336724(+)$1	1	281	308	13.8581
(.((.((.(((.....))).)).))))	chr19:54705254-54705460(+)$1	1	48	75	11.6772
.(.(((...(((....))).))).).)	chr19:18418216-18418458(-)$1	1	125	152	8.7913
(((((((((((((...)))))))))..	chr1:156262779-156263041(-)$1	1	109	136	9.5743
..(((((...(.....)...)))))))	chr17:79910752-79911019(-)$1	1	212	239	12.5728
(((...(((.(.....).))).)))))	chr11:8704650-8704863(+)$1	1	89	116	11.8268
((((((((((......)))))))))).	chr22:24236616-24236868(+)$1	1	136	163	10.6128
..(((...(((.....)))...)))..	chr2:85806106-85806357(+)$1	1	82	109	10.0167
(..((((.(.(.....).).))))...	chr20:60962340-60962544(+)$1	1	100	127	11.7959
((((((..(((.....)))..)).)))	chr17:80197179-80197421(+)$1	1	15	42	12.2418
(.((.((((((.....)))))).)).)	chr11:75112590-75112811(+)$1	1	86	113	10.1360
((...((((((.....))))))))).)	chr17:7004756-7005036(-)$1	1	117	144	10.6082
((((...(((......)))...)))))	chr7:149575728-149575980(+)$1	1	62	89	10.4336
(((((((((((.....))))))...))	chr11:116701389-116701591(+)$1	1	81	108	9.9271
...((((.(((.....))).))))...	chr13:21714633-21714883(+)$1	1	51	78	12.6835
((((((((((((....)))))))))))	chr2:241070278-241070592(-)$1	1	282	309	9.5319
(.((.((.(((.....))).)))).))	chr11:838034-838271(+)$1	1	200	227	11.7236
(.((...((((.....)).))...)))	chr1:120286551-120286805(+)$1	1	67	94	10.5659
(((((((((((...)))))))))))))	chr1:44441883-44442123(+)$1	1	107	134	10.0892
(...(((((((.....)))))))))).	chr19:36641084-36641326(+)$1	1	40	67	12.3155
((((((..(((.....)))..))))))	chr12:96254844-96255090(+)$1	1	61	88	12.5019
..(((((..((......))..))))).	chr14:94844690-94844900(-)$1	1	142	169	9.2503
(((((..(((......)))..))))).	chr15:80478370-80478749(+)$1	1	218	245	10.4084
)))((((.(((.....))).)))).((	chr20:2443235-2443480(-)$1	1	151	178	11.2789
(...(((..((.....)).)))...))	chr14:103574588-103574858(+)$1	1	18	45	12.7103
(((((....(......)....))))))	chr12:49444062-49444378(-)$1	1	160	187	9.5208
(((....(((......)))...))).(	chr6:158613080-158613484(+)$1	1	99	126	9.8477
(((((((((((.....)).))))))).	chr15:44085118-44085346(+)$1	1	137	164	12.6073
(((((.((.((.....)).))...)))	chr14:78183741-78183992(+)$1	1	13	40	10.9883
)))((((.(((.....))).)))).((	chr20:2443181-2443435(-)$1	1	106	133	11.2789
(((((((..((.....))..)))).))	chr14:50052567-50052769(-)$1	1	38	65	10.9426
((((((((...((...))...))))))	chr20:60962867-60963071(+)$1	1	102	129	9.3833
..(.(((.(((......))).))).).	chr17:34171835-34172136(+)$1	1	133	160	10.6385

#PSSM
c : 0.16	e : 0.16	f : 0.10	g : 0.10	= : 0.07	d : 0.07	! : 0.07	[ : 0.03	$ : 0.03	h : 0.03	a : 0.03	" : 0.03	D : 0.01	b : 0.01	: : 0.01	i : 0.01	
e : 0.14	g : 0.12	[ : 0.10	f : 0.08	c : 0.08	= : 0.07	d : 0.07	" : 0.07	! : 0.07	$ : 0.03	h : 0.03	D : 0.01	b : 0.01	a : 0.01	: : 0.01	i : 0.01	
e : 0.19	g : 0.17	f : 0.10	" : 0.08	b : 0.08	c : 0.08	= : 0.07	a : 0.03	i : 0.03	h : 0.03	! : 0.03	d : 0.01	[ : 0.01	
g : 0.17	e : 0.17	d : 0.14	b : 0.10	f : 0.08	= : 0.07	" : 0.07	[ : 0.03	i : 0.03	c : 0.03	a : 0.01	! : 0.01	# : 0.01	
g : 0.23	e : 0.14	d : 0.12	[ : 0.10	" : 0.08	= : 0.07	c : 0.07	i : 0.05	f : 0.05	b : 0.03	# : 0.01	
g : 0.23	d : 0.12	" : 0.08	e : 0.08	f : 0.08	= : 0.07	b : 0.07	i : 0.05	c : 0.05	a : 0.03	! : 0.03	# : 0.03	[ : 0.01	
g : 0.21	! : 0.12	d : 0.12	" : 0.10	= : 0.07	b : 0.07	e : 0.07	f : 0.07	i : 0.05	c : 0.05	# : 0.03	
! : 0.21	[ : 0.19	g : 0.14	= : 0.07	" : 0.07	f : 0.07	c : 0.07	d : 0.05	i : 0.05	b : 0.03	# : 0.01	
c : 0.33	g : 0.12	! : 0.12	= : 0.07	" : 0.07	d : 0.05	[ : 0.05	f : 0.05	b : 0.03	i : 0.03	a : 0.01	# : 0.01	
c : 0.35	b : 0.24	= : 0.07	g : 0.07	d : 0.05	[ : 0.05	f : 0.05	i : 0.03	" : 0.03	a : 0.01	
c : 0.30	b : 0.23	o : 0.12	g : 0.07	a : 0.07	d : 0.05	f : 0.05	i : 0.03	= : 0.03	" : 0.01	
n : 0.67	o : 0.21	c : 0.03	i : 0.01	= : 0.01	l : 0.01	b : 0.01	
n : 0.67	o : 0.21	m : 0.05	i : 0.01	l : 0.01	b : 0.01	
n : 0.67	o : 0.21	m : 0.05	l : 0.05	
n : 0.67	o : 0.21	m : 0.05	l : 0.03	= : 0.01	
n : 0.67	o : 0.21	m : 0.05	l : 0.03	= : 0.01	
c : 0.32	b : 0.21	o : 0.08	a : 0.08	= : 0.07	g : 0.07	d : 0.05	f : 0.05	i : 0.03	
c : 0.35	b : 0.26	= : 0.07	g : 0.07	d : 0.05	] : 0.05	f : 0.05	i : 0.03	3 : 0.01	4 : 0.01	
c : 0.37	g : 0.10	] : 0.10	= : 0.07	f : 0.07	d : 0.05	b : 0.05	3 : 0.05	i : 0.03	2 : 0.03	a : 0.01	4 : 0.01	
] : 0.19	g : 0.16	2 : 0.16	3 : 0.12	= : 0.07	c : 0.07	f : 0.07	d : 0.05	i : 0.03	b : 0.03	4 : 0.01	
g : 0.19	2 : 0.12	3 : 0.12	d : 0.12	= : 0.07	f : 0.07	b : 0.07	] : 0.05	c : 0.05	i : 0.03	e : 0.03	a : 0.01	4 : 0.01	
g : 0.23	3 : 0.12	d : 0.12	e : 0.10	f : 0.10	= : 0.07	b : 0.07	i : 0.05	c : 0.05	] : 0.03	a : 0.01	
g : 0.23	e : 0.14	d : 0.12	3 : 0.08	c : 0.08	= : 0.07	b : 0.07	f : 0.07	] : 0.05	i : 0.05	
e : 0.16	g : 0.16	d : 0.14	f : 0.08	c : 0.08	= : 0.07	] : 0.07	b : 0.07	3 : 0.07	i : 0.05	a : 0.01	
e : 0.21	g : 0.16	] : 0.10	= : 0.07	f : 0.07	c : 0.07	i : 0.05	b : 0.05	3 : 0.05	a : 0.03	d : 0.03	: : 0.03	2 : 0.01	4 : 0.01	
e : 0.23	g : 0.12	f : 0.10	] : 0.08	b : 0.08	= : 0.05	d : 0.05	3 : 0.05	c : 0.05	h : 0.03	: : 0.03	2 : 0.01	4 : 0.01	i : 0.01	a : 0.01	
e : 0.17	b : 0.12	f : 0.10	d : 0.08	: : 0.07	g : 0.07	2 : 0.07	c : 0.05	3 : 0.05	8 : 0.03	h : 0.03	] : 0.03	4 : 0.01	a : 0.01	= : 0.01	i : 0.01	

#score	623.1962117573197
#seq	56
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_transcript_m3_run2.txt

#BEAR
dddd!!eeeeennnnneeeeedddd	chr17:7317999-7318240(+)$1	241	23	48	9.8830
ddd####eeeeellleeeee4444d	chr1:1321833-1322050(-)$1	217	177	202	11.8686
gggggggeeeeellleeeee]gggg	chr21:45223631-45223890(+)$1	259	60	85	10.0481
fccc!!eeeeemmmmeeeee333cc	chr17:64794137-64794384(+)$1	247	46	71	14.0876
dd[ccc[ddddmmmmddddccc]dd	chr3:184102223-184102469(+)$1	246	99	124	10.3037
dd"""eeeeennnnneeeee333dd	chr12:56710925-56711223(-)$1	298	217	242	11.0998
iiiiiiiddddmmmmdddd22iiii	chr14:24909386-24909665(-)$1	279	23	48	10.3190
fff!!aeeeeemmmmeeeee]a22f	chr12:31257293-31257572(+)$1	279	193	218	12.2057
[a[bb!!eeeeellleeeee333bb	chr9:117063287-117063505(+)$1	218	99	124	11.3057
:dddd!!ddddmmmmdddd333ddd	chr12:48366737-48367018(-)$1	281	50	75	11.0299
ee[bb!!ddddmmmmdddd]bb]ee	chr1:48713651-48713896(+)$1	245	105	130	9.8066
ggggg[eeeeemmmmeeeee4444g	chr4:83345730-83345990(-)$1	260	47	72	13.5117
eeccc[ddddoooooodddd]ccc2	chr3:142775306-142775590(+)$1	284	110	135	9.3737
ee####eeeeemmmmeeeee55555	chr11:93464228-93464464(-)$1	236	97	122	10.1747
ccc"""eeeeeooooooeeeee333	chr2:61415232-61415490(-)$1	258	95	120	11.0514
ddccc[eeeeemmmmeeeee]ccc]	chr8:145540664-145540923(-)$1	259	198	223	13.1205
dd"""eeeeennnnneeeee]dddd	chr3:50313631-50313868(+)$1	237	204	229	9.9955
!!bb"""ddddmmmmdddd22bbdd	chr14:23528288-23528507(-)$1	219	109	134	10.6617
:dddd!!ddddmmmmdddd]dddd:	chr2:219563815-219564079(+)$1	264	195	220	8.8173
ddddd"""cccmmmmccc4444ddd	chr14:24107270-24107478(+)$1	208	43	68	9.2471
!dddd[ddddoooooodddd]dddd	chr3:48451324-48451539(-)$1	215	36	61	9.3119
a[a[gggggggmmmmggggggg]a]	chr1:40766698-40766967(-)$1	269	225	250	8.6430
[dddd[eeeeemmmmeeeee]dddd	chr8:144568690-144569023(-)$1	333	287	312	12.7049
b!!a[eeeeennnnneeeee]a22b	chr7:65552639-65552869(+)$1	230	143	168	9.6067
$$$ddddddddmmmmdddd4444dd	chr21:46932546-46932774(+)$1	228	77	102	10.4200
eebb!!eeeeemmmmeeeee333bb	chr14:24105671-24105882(+)$1	211	29	54	13.1570
:dddd[eeeeeooooooeeeeeddd	chr20:25206800-25207031(+)$1	231	49	74	9.1371
$dddd[eeeeemmmmeeeee]dddd	chr17:64797599-64797841(+)$1	242	204	229	12.4966
ccc"""ddddoooooodddd4444c	chr2:85771439-85771657(+)$1	218	73	98	10.5950
ee####eeeeennnnneeeeeeeee	chr7:32526662-32527002(-)$1	340	126	151	9.4907
Eccc!!eeeeemmmmeeeee22ccc	chr14:24108114-24108319(+)$1	205	51	76	12.4850
ddccc[eeeeennnnneeeee]ccc	chr11:65195754-65195974(+)$1	220	51	76	10.0008
eee[bbeeeeemmmmeeeee]bb]e	chr22:20100023-20100318(-)$1	295	23	48	11.0646
f[ccc[eeeeemmmmeeeee]ccc]	chr17:64794184-64794464(+)$1	280	23	48	12.9894
"""eeeeecccmmmmccc]eeeee3	chr1:2336637-2336940(-)$1	303	224	249	8.5254
""bb"""ddddmmmmdddd333bb]	chr1:227148344-227148590(+)$1	246	86	111	11.4144
ffff!!eeeeemmmmeeeee]ffff	chr14:103576272-103576541(+)$1	269	206	231	11.9115
ddd[gggggggmmmmggggggg444	chr2:85569208-85569494(-)$1	286	240	265	8.8873
##dddd[ddddmmmmdddddddd00	chr15:31280549-31280847(-)$1	298	256	281	8.9384
ggggeeeeeooooooeeeee333gg	chr14:24612761-24612981(-)$1	220	179	204	10.6048
cc[bb!!ddddmmmmdddd22bb22	chr3:50314272-50314532(+)$1	260	203	228	10.2123
eeee!!eeeeemmmmeeeee22eee	chr11:7674453-7674765(+)$1	312	227	252	12.4889
ddbb[bbddddmmmmdddd333bb]	chr9:117072734-117072955(+)$1	221	37	62	10.0235
ggggg!!ddddmmmmddddgggggg	chr3:41281198-41281432(+)$1	234	68	93	10.4022
::ccc[eeeeemmmmeeeee]ccc:	chr3:184100730-184100960(+)$1	230	180	205	10.4731
ggggggeeeeemmmmeeeee333gg	chr9:139757174-139757417(-)$1	243	108	133	13.1274
dddd!!ddddoooooodddd4444d	chr4:184090141-184090386(+)$1	245	192	217	10.4795
::ccc[eeeeemmmmeeeee333cc	chr13:64649480-64649799(-)$1	319	141	166	12.1974
b!!bb[eeeeemmmmeeeee]bb22	chrX:18911148-18911393(-)$1	245	211	236	11.8790
ffffffeeeeemmmmeeeee4444f	chr1:227148834-227149079(+)$1	245	202	227	12.0564
[a[ccc[ddddmmmmddddccc]a]	chr17:79974399-79974645(+)$1	246	64	89	10.4495
ccca"""ddddmmmmdddd4444a]	chr17:61775238-61775565(-)$1	327	230	255	12.3098
[ccc!!eeeeemmmmeeeee333cc	chr12:69136040-69136309(+)$1	269	130	155	14.3036
&dddd[eeeeellleeeeedddddd	chrX:18913159-18913393(-)$1	234	185	210	9.3170

#otherMatches

#Seq PSSM
GGGCUCCUGGACCAGAUCCAGGCCC	chr17:7317999-7318240(+)$1	241	23	48	9.8830
AUCCGGAGCGUUAUGGACGUGGUAG	chr1:1321833-1322050(-)$1	217	177	202	11.8686
GGCCUCGCUUGCACCGCGGGACGAG	chr21:45223631-45223890(+)$1	259	60	85	10.0481
UGCCUGCCUCAUCCCUGAGGAGUGG	chr17:64794137-64794384(+)$1	247	46	71	14.0876
AGGCCGUGGGUAUCUGCCCUGGGCU	chr3:184102223-184102469(+)$1	246	99	124	10.3037
UUCAAGACUUAGCACAAGUCACCAA	chr12:56710925-56711223(-)$1	298	217	242	11.0998
CUGGGCCUGGGGGGCCCCAUCGGCU	chr14:24909386-24909665(-)$1	279	23	48	10.3190
GAGACCCCGUGUCAUCACGGAGACC	chr12:31257293-31257572(+)$1	279	193	218	12.2057
GGGACCUUCGGGACUCCCGGUAUGU	chr9:117063287-117063505(+)$1	218	99	124	11.3057
CCUGUAAGACCUUCGGGUCAAGGCA	chr12:48366737-48367018(-)$1	281	50	75	11.0299
CUGUCAGACCCGAAGGGGUGGGGAG	chr1:48713651-48713896(+)$1	245	105	130	9.8066
GUACAAGACACCAUUGUGUCCAACU	chr4:83345730-83345990(-)$1	260	47	72	13.5117
UAUGCAUGUGUAAACUCAUGAGCAA	chr3:142775306-142775590(+)$1	284	110	135	9.3737
UUCAUCAGUAUAUCCAUAUUAAAAC	chr11:93464228-93464464(-)$1	236	97	122	10.1747
GACCCUGAGGUUGCUUUAUCUCUCA	chr2:61415232-61415490(-)$1	258	95	120	11.0514
CCAGGACAGGGGUGUUCCUGGCCUC	chr8:145540664-145540923(-)$1	259	198	223	13.1205
GCUUUACGCAACCGCUGCGUCGCCU	chr3:50313631-50313868(+)$1	237	204	229	9.9955
AGUCGGAGCACACCUGUGCGGGACC	chr14:23528288-23528507(-)$1	219	109	134	10.6617
UGUGAAGGAGGCUGCCCUCAUUGCC	chr2:219563815-219564079(+)$1	264	195	220	8.8173
ugaggccagugagaccacaaacccu	chr14:24107270-24107478(+)$1	208	43	68	9.2471
GUGGGCUCUUGGCACAGGGACCCCA	chr3:48451324-48451539(-)$1	215	36	61	9.3119
UGUCUGGGACUCAGGAGUCCUAAGG	chr1:40766698-40766967(-)$1	269	225	250	8.6430
acccccaaugugacuacguuugggg	chr8:144568690-144569023(-)$1	333	287	312	12.7049
GUCCUGGGGAGCCAGUCCCCUGCCC	chr7:65552639-65552869(+)$1	230	143	168	9.6067
AUUUCUCCAGGAUUUCCUGCUUUGG	chr21:46932546-46932774(+)$1	228	77	102	10.4200
cugcaacuucacuccuggggccagc	chr14:24105671-24105882(+)$1	211	29	54	13.1570
AAUGAUGGAGGGAGACACCUCCUCA	chr20:25206800-25207031(+)$1	231	49	74	9.1371
AAUACACCAUGGAAACGUGGGGUGU	chr17:64797599-64797841(+)$1	242	204	229	12.4966
CAUUAAACCAUCUCCCUGGUGCUUA	chr2:85771439-85771657(+)$1	218	73	98	10.5950
GUGAAUGAGUUUCCUUGACUUACAC	chr7:32526662-32527002(-)$1	340	126	151	9.4907
GGGCGUCCUGGCUAACCGGGUAGCC	chr14:24108114-24108319(+)$1	205	51	76	12.4850
AGAACCGCAGGAACGGCCUGUUGUU	chr11:65195754-65195974(+)$1	220	51	76	10.0008
CGGGUGAAGGGCAUUCCCUUCCGGC	chr22:20100023-20100318(-)$1	295	23	48	11.0646
GCGGGAGGCUGCCUGCAGUCAUCUU	chr17:64794184-64794464(+)$1	280	23	48	12.9894
CAUGGGAGGCGGCGCUGCUCUCCCC	chr1:2336637-2336940(-)$1	303	224	249	8.5254
AGUUUGAAAACAUUGGUUUGGUGAA	chr1:227148344-227148590(+)$1	246	86	111	11.4144
UGCGGAGGCCCCUCGGGGCCGCGUG	chr14:103576272-103576541(+)$1	269	206	231	11.9115
UAACAUUAAUAAAUUUAUUGAUUCC	chr2:85569208-85569494(-)$1	286	240	265	8.8873
AUCUGUACAUGCAUACAUGACGGCU	chr15:31280549-31280847(-)$1	298	256	281	8.9384
GCCUUCUAUGUGAGUGUGGAGUAAG	chr14:24612761-24612981(-)$1	220	179	204	10.6048
GCAGUGAGCAGAAAGCUGUGAACAG	chr3:50314272-50314532(+)$1	260	203	228	10.2123
GACACUUAAAGACACUUUUACAUGU	chr11:7674453-7674765(+)$1	312	227	252	12.4889
ugauguaugauaagAAUCACGAUGG	chr9:117072734-117072955(+)$1	221	37	62	10.0235
AACAAUUGAAGUAAACUUUUUGUUC	chr3:41281198-41281432(+)$1	234	68	93	10.4022
GCGCAUCAGUGGACACAUUGCUGCC	chr3:184100730-184100960(+)$1	230	180	205	10.4731
CCGCUCCCAGCUGGGGUUGGUGAGA	chr9:139757174-139757417(-)$1	243	108	133	13.1274
UCAGAAGUUGUAAAAUCAACAGAAU	chr4:184090141-184090386(+)$1	245	192	217	10.4795
cauucauccuggacacaggacaaga	chr13:64649480-64649799(-)$1	319	141	166	12.1974
GCAGUAGCCUUGACAAGGGCCACCU	chrX:18911148-18911393(-)$1	245	211	236	11.8790
GAGGCCUGGGGCCUCCCCUGACUUG	chr1:227148834-227149079(+)$1	245	202	227	12.0564
GCCAGCUGCCCGGGAGGGCGUUCGG	chr17:79974399-79974645(+)$1	246	64	89	10.4495
UCUCGAACCACCAGCGUGGAGAAGC	chr17:61775238-61775565(-)$1	327	230	255	12.3098
AAGCUCAGAGAGUCCUCUCUAAUGC	chr12:69136040-69136309(+)$1	269	130	155	14.3036
AAGGGCUUCAUUGCAUGGACUCUGA	chrX:18913159-18913393(-)$1	234	185	210	9.3170

#DB
((((..(((((.....)))))))))	chr17:7317999-7318240(+)$1	1	23	48	9.8830
(((....(((((...)))))....)	chr1:1321833-1322050(-)$1	1	177	202	11.8686
((((((((((((...))))).))))	chr21:45223631-45223890(+)$1	1	60	85	10.0481
)(((..(((((....)))))...))	chr17:64794137-64794384(+)$1	1	46	71	14.0876
((.(((.((((....))))))).))	chr3:184102223-184102469(+)$1	1	99	124	10.3037
((...(((((.....)))))...))	chr12:56710925-56711223(-)$1	1	217	242	11.0998
(((((((((((....))))..))))	chr14:24909386-24909665(-)$1	1	23	48	10.3190
(((..((((((....))))).)..)	chr12:31257293-31257572(+)$1	1	193	218	12.2057
.(.((..(((((...)))))...))	chr9:117063287-117063505(+)$1	1	99	124	11.3057
.((((..((((....))))...)))	chr12:48366737-48367018(-)$1	1	50	75	11.0299
((.((..((((....)))).)).))	chr1:48713651-48713896(+)$1	1	105	130	9.8066
(((((.(((((....)))))....)	chr4:83345730-83345990(-)$1	1	47	72	13.5117
(((((.((((......)))).))).	chr3:142775306-142775590(+)$1	1	110	135	9.3737
((....(((((....))))).....	chr11:93464228-93464464(-)$1	1	97	122	10.1747
(((...(((((......)))))...	chr2:61415232-61415490(-)$1	1	95	120	11.0514
(((((.(((((....))))).))).	chr8:145540664-145540923(-)$1	1	198	223	13.1205
((...(((((.....))))).))))	chr3:50313631-50313868(+)$1	1	204	229	9.9955
..((...((((....))))..))))	chr14:23528288-23528507(-)$1	1	109	134	10.6617
.((((..((((....)))).)))).	chr2:219563815-219564079(+)$1	1	195	220	8.8173
(((((...(((....)))....)))	chr14:24107270-24107478(+)$1	1	43	68	9.2471
.((((.((((......)))).))))	chr3:48451324-48451539(-)$1	1	36	61	9.3119
(.(.(((((((....))))))).).	chr1:40766698-40766967(-)$1	1	225	250	8.6430
.((((.(((((....))))).))))	chr8:144568690-144569023(-)$1	1	287	312	12.7049
(..(.(((((.....))))).)..)	chr7:65552639-65552869(+)$1	1	143	168	9.6067
...((((((((....))))....))	chr21:46932546-46932774(+)$1	1	77	102	10.4200
((((..(((((....)))))...))	chr14:24105671-24105882(+)$1	1	29	54	13.1570
.((((.(((((......))))))))	chr20:25206800-25207031(+)$1	1	49	74	9.1371
.((((.(((((....))))).))))	chr17:64797599-64797841(+)$1	1	204	229	12.4966
(((...((((......))))....)	chr2:85771439-85771657(+)$1	1	73	98	10.5950
((....(((((.....)))))))))	chr7:32526662-32527002(-)$1	1	126	151	9.4907
((((..(((((....)))))..)))	chr14:24108114-24108319(+)$1	1	51	76	12.4850
(((((.(((((.....))))).)))	chr11:65195754-65195974(+)$1	1	51	76	10.0008
(((.(((((((....))))).)).)	chr22:20100023-20100318(-)$1	1	23	48	11.0646
(.(((.(((((....))))).))).	chr17:64794184-64794464(+)$1	1	23	48	12.9894
...((((((((....))).))))).	chr1:2336637-2336940(-)$1	1	224	249	8.5254
..((...((((....))))...)).	chr1:227148344-227148590(+)$1	1	86	111	11.4144
((((..(((((....))))).))))	chr14:103576272-103576541(+)$1	1	206	231	11.9115
(((.(((((((....)))))))...	chr2:85569208-85569494(-)$1	1	240	265	8.8873
..((((.((((....))))))))..	chr15:31280549-31280847(-)$1	1	256	281	8.9384
(((((((((......)))))...))	chr14:24612761-24612981(-)$1	1	179	204	10.6048
((.((..((((....))))..))..	chr3:50314272-50314532(+)$1	1	203	228	10.2123
((((..(((((....)))))..)))	chr11:7674453-7674765(+)$1	1	227	252	12.4889
((((.((((((....))))...)).	chr9:117072734-117072955(+)$1	1	37	62	10.0235
(((((..((((....))))))))))	chr3:41281198-41281432(+)$1	1	68	93	10.4022
..(((.(((((....))))).))).	chr3:184100730-184100960(+)$1	1	180	205	10.4731
(((((((((((....)))))...))	chr9:139757174-139757417(-)$1	1	108	133	13.1274
((((..((((......))))....)	chr4:184090141-184090386(+)$1	1	192	217	10.4795
..(((.(((((....)))))...))	chr13:64649480-64649799(-)$1	1	141	166	12.1974
(..((.(((((....))))).))..	chrX:18911148-18911393(-)$1	1	211	236	11.8790
(((((((((((....)))))....)	chr1:227148834-227149079(+)$1	1	202	227	12.0564
.(.(((.((((....))))))).).	chr17:79974399-79974645(+)$1	1	64	89	10.4495
((((...((((....))))....).	chr17:61775238-61775565(-)$1	1	230	255	12.3098
.(((..(((((....)))))...))	chr12:69136040-69136309(+)$1	1	130	155	14.3036
.((((.(((((...)))))))))))	chrX:18913159-18913393(-)$1	1	185	210	9.3170

#PSSM
d : 0.20	e : 0.12	g : 0.09	f : 0.09	: : 0.09	[ : 0.07	c : 0.07	! : 0.03	b : 0.03	$ : 0.03	" : 0.03	i : 0.01	a : 0.01	E : 0.01	# : 0.01	& : 0.01	
d : 0.33	c : 0.12	e : 0.12	g : 0.09	f : 0.05	! : 0.05	a : 0.03	[ : 0.03	" : 0.03	: : 0.03	i : 0.01	$ : 0.01	# : 0.01	
d : 0.24	c : 0.22	g : 0.09	[ : 0.09	b : 0.07	" : 0.05	f : 0.05	# : 0.03	! : 0.03	e : 0.03	i : 0.01	a : 0.01	$ : 0.01	
d : 0.22	c : 0.20	b : 0.14	g : 0.09	" : 0.07	# : 0.05	[ : 0.05	a : 0.03	e : 0.03	f : 0.03	i : 0.01	! : 0.01	
d : 0.18	! : 0.16	c : 0.14	" : 0.12	g : 0.11	b : 0.09	# : 0.05	[ : 0.03	e : 0.03	i : 0.01	f : 0.01	
! : 0.25	[ : 0.24	" : 0.11	e : 0.09	g : 0.07	# : 0.05	c : 0.03	d : 0.03	b : 0.03	i : 0.01	a : 0.01	f : 0.01	
e : 0.55	! : 0.11	d : 0.09	" : 0.07	g : 0.05	[ : 0.05	# : 0.01	i : 0.01	b : 0.01	
e : 0.61	d : 0.33	g : 0.03	" : 0.01	
e : 0.59	d : 0.33	c : 0.03	g : 0.03	
e : 0.57	d : 0.33	c : 0.03	g : 0.03	o : 0.01	
e : 0.51	d : 0.25	o : 0.09	n : 0.05	c : 0.03	g : 0.03	
m : 0.68	o : 0.12	n : 0.11	e : 0.05	l : 0.01	
m : 0.68	o : 0.12	n : 0.11	l : 0.07	
m : 0.68	o : 0.12	n : 0.11	l : 0.07	
m : 0.68	o : 0.12	n : 0.11	l : 0.05	e : 0.01	
e : 0.49	d : 0.25	o : 0.11	n : 0.05	c : 0.03	g : 0.03	
e : 0.55	d : 0.33	o : 0.03	c : 0.03	g : 0.03	
e : 0.59	d : 0.33	c : 0.03	g : 0.03	
e : 0.59	d : 0.33	g : 0.03	4 : 0.01	] : 0.01	
e : 0.59	d : 0.11	2 : 0.05	3 : 0.05	4 : 0.05	g : 0.05	c : 0.03	] : 0.03	
] : 0.25	3 : 0.20	4 : 0.14	e : 0.11	2 : 0.09	d : 0.05	g : 0.05	c : 0.03	b : 0.01	5 : 0.01	
3 : 0.20	d : 0.14	4 : 0.14	c : 0.11	b : 0.09	g : 0.07	e : 0.07	a : 0.03	2 : 0.03	i : 0.01	5 : 0.01	] : 0.01	f : 0.01	
d : 0.20	3 : 0.16	4 : 0.14	c : 0.11	b : 0.11	] : 0.07	e : 0.05	g : 0.03	2 : 0.03	i : 0.01	5 : 0.01	f : 0.01	
d : 0.25	c : 0.16	4 : 0.11	g : 0.07	2 : 0.07	b : 0.07	e : 0.07	a : 0.05	i : 0.01	5 : 0.01	3 : 0.01	] : 0.01	f : 0.01	0 : 0.01	
d : 0.27	] : 0.12	c : 0.11	g : 0.09	e : 0.07	f : 0.05	b : 0.05	2 : 0.05	3 : 0.03	: : 0.03	i : 0.01	5 : 0.01	4 : 0.01	0 : 0.01	

#score	590.0178932963087
#seq	54
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_CDS_m2_run2.txt

#BEAR
:================oooooo================	chr17:73138744-73139048(-)$1	304	50	89	18.2575
iiiiiiii"""gggggggnnnnnggggggg22iiiiiii	chr4:123265342-123265646(+)$1	304	235	274	14.5033
:::cccbb"""ffffffooooooffffff4444bb]ccc	chr8:68115366-68115692(-)$1	326	204	243	12.3644
[dddd[ccc[ddddcccooooooccc22dddd]ccc]dd	chr10:70958193-70958474(+)$1	281	42	81	15.0101
""eeeee[dddd!!cccooooooccc22ddddeeeee33	chr3:9475515-9475788(+)$1	273	38	77	15.2567
iiiiiiigggggggcccooooooccc]ggggggg>>>>>	chr2:70068066-70068323(+)$1	257	110	149	16.3758
[=============!!aooooooa22=============	chr12:22666188-22666446(-)$1	258	208	247	18.5820
============[a[bboooooobba22===========	chr1:3549774-3550068(-)$1	294	223	262	17.9192
ff[eeeee####bb[cccnnnnnccc]bb4444eeeeef	chr14:58727523-58727789(+)$1	266	148	187	12.0713
eeee"""bb[ffffffooooooffffffbb333eeeee4	chr10:102283561-102283856(-)$1	295	146	185	13.7743
e[ccc!!============mmmm============]ccc	chr1:38018086-38018376(-)$1	290	205	244	14.1924
cc!!ccc[iiiiiiiiiooooooiiiiiiiii333ccc]	chr15:44813499-44813822(+)$1	323	216	255	17.5869
dddddd####gggggggooooooggggggg4444dddd]	chr1:197104253-197104622(-)$1	369	214	253	15.8995
dddeeeee!!ccceeeeeooooooeeeee22ccc22eee	chr1:43126477-43126718(+)$1	241	41	80	13.5126
"ccca[eeeee[ffffffooooooffffff22eeeee]a	chrX:13336982-13337205(+)$1	223	147	186	13.4593
ggggggg!!ccc!!cccnnnnnccc22ccc22ggggggg	chr12:99042513-99042758(+)$1	245	179	218	14.0397
dd[ccc"""bb[ddddoooooodddd22bb22ccc]ddd	chr5:90016601-90016853(+)$1	252	177	216	13.4430
!eeeeebb[bb!!ddddoooooodddd22bb]bb]eeee	chr1:43126518-43126784(+)$1	266	214	253	12.9048
"""==========!!ccclllccc333==========33	chr8:95871738-95872021(+)$1	283	198	237	15.4645
ggg!!ccc"""bb[eeeeellleeeee]bb4444ccc44	chr10:94392339-94392661(+)$1	322	89	128	11.7208
eggggggg!!ccc[cccooooooccc]ccc22ggggggg	chr3:69111226-69111542(-)$1	316	27	66	17.9741
ccc"""ffffff!!cccooooooccc22ffffff]ccc:	chr5:89989526-89989817(+)$1	291	171	210	14.2419
ee"""ccc"""eeeeellleeeee333ccc333eeeee]	chr1:89271339-89271604(+)$1	265	45	84	11.1880
!!bbggggggg[a[cccnnnnnccc]aggggggg333bb	chr5:150079831-150080126(-)$1	295	118	157	12.8379
###gggggggffffffrrrrrrrrrffffff]ggggggg	chr6:136560831-136561114(-)$1	283	76	115	11.6004
c[ccchhhhhhhh[a[aooooooa]ahhhhhhhh]cccc	chr1:169435111-169435379(-)$1	268	188	227	13.1076
iillliiiiiiiiicccooooooccceeeeemmmmeeee	chr6:83728458-83728792(-)$1	334	264	303	13.2435
::ggggggg[ddddcccooooooccc]ddddggggggg:	chrX:100646969-100647277(+)$1	308	239	278	13.4166
ccc[ccc!!cccddddoooooodddd]ccc333ccc]cc	chr2:85768249-85768484(+)$1	235	180	219	15.1423
f!!bb[dddd[ffffffooooooffffff]ddddbb444	chr6:135715725-135716001(-)$1	276	57	96	12.9473
::dddd!!bb!!eeeeeooooooeeeee4444bb]dddd	chr6:52317572-52317833(+)$1	261	176	215	12.3101
hhh[bb"""eeeeecccooooooccc22eeeee22bb]h	chr3:196986942-196987263(-)$1	321	42	81	13.9362
ddd!!ccc!!a[eeeeeooooooeeeee]a22ccc22dd	chr15:62315708-62316089(-)$1	381	271	310	15.4131
eee$$$$$eeeee[cccooooooccceeeeeeeeee22a	chr15:66819589-66819872(+)$1	283	157	196	13.7631
hhh[dddd!!ccc[bboooooobbcccdddd]hhhhhhh	chr6:101090263-101090557(-)$1	294	32	71	12.2669
gggggdddd!!ffffffooooooffffff22ddddgggg	chr3:33886973-33887289(+)$1	316	222	261	14.4472
==========ccc!!ddddoooooodddd333ccc4444	chr1:6601722-6602007(-)$1	285	123	162	14.6802
ff[dddd[iiiiiiiiiooooooiiiiiiiii333dddd	chr1:52940372-52940622(-)$1	250	166	205	16.2028
f[ffffff"""bb!!bboooooobb]bbffffff22fff	chr5:37003346-37003647(+)$1	301	77	116	13.0477
hhhhh####dddd[cccooooooccc22ddddhhhhhhh	chr9:111714528-111714805(-)$1	277	166	205	13.8978
!eeeee[==========nnnnn==========]eeeeef	chr1:76193829-76194226(+)$1	397	314	353	14.3807
ddd[ggggggg"""ddddoooooodddd333gggggggd	chr6:149862592-149862896(-)$1	304	92	131	14.5849
::iiiiiiiiiddddbboooooobb]dddd]iiiiiiii	chr1:76260113-76260365(+)$1	252	69	108	13.8544
eeeeedddd[a[eeeeeooooooeeeee]a]dddd>>>>	chr7:128128448-128128704(+)$1	256	40	79	13.3622
c!!=============bbnnnnnbb22============	chr11:46098181-46098409(-)$1	228	121	160	14.7066
mmmgggggggccc[cccrrrrrrrrrccc]cccgggggg	chr10:69647001-69647278(+)$1	277	19	58	10.6916
"""ffffff[dddd!!aooooooa22ddddffffff22d	chrX:122757456-122757695(-)$1	239	157	196	13.0366
[ffffff"""aaeeeeeooooooeeeee4444a]a333f	chr5:37064010-37064293(+)$1	283	149	188	15.7243
!!a[eeeee[affffffooooooffffff]a]eeeee]a	chr2:85770052-85770335(+)$1	283	19	58	15.2996
e[ccc!!==========oooooo==========22ccce	chr2:225371602-225371876(-)$1	274	230	269	18.0461
eeeee[bb"""ccc[bboooooobbccc333bb]eeeee	chr6:136560452-136560727(-)$1	275	95	134	15.1494
iiiiiiggggggg!!cccnnnnnccc22gggggggFFFF	chr2:61515576-61515920(-)$1	344	269	308	12.0944
eeeee"""iiiiiiiiiooooooiiiiiiiii333eeee	chr2:160253486-160253837(-)$1	351	201	240	17.2296

#otherMatches

#Seq PSSM
UUGUGUGUGUGUGUGUGUAUUUUCAUAUACGUAUGUAUA	chr17:73138744-73139048(-)$1	304	50	89	18.2575
GAUUCACUCAGUAUAAACCUUGAGUUUGUAAAAGUGAGU	chr4:123265342-123265646(+)$1	304	235	274	14.5033
AGAGAGAUGCGGUGGACUUUGAUGUUCGCGUUGAUACUC	chr8:68115366-68115692(-)$1	326	204	243	12.3644
AUUUAUUCUGUGAGUCGGCAGAUUGAAAUUCGGGGAUUA	chr10:70958193-70958474(+)$1	281	42	81	15.0101
GCAGUUAAUGAGAAGAGCGUGUAUUCCACUCAUAAUUAU	chr3:9475515-9475788(+)$1	273	38	77	15.2567
UAUGCACGUUAUUCGAAGAAAGGUUCAGAAUAAUAAUCU	chr2:70068066-70068323(+)$1	257	110	149	16.3758
UGGAACAGAGGGUAAGAUUCACUUGAUAUUCUUUGUUCU	chr12:22666188-22666446(-)$1	258	208	247	18.5820
GCUUCCAGCCAGUGUGCCCCUCAGCCUGUUGGCUGGAGG	chr1:3549774-3550068(-)$1	294	223	262	17.9192
GUUAGGGUCUUACAGUGUGAAUGACGGUGCGCAACUCUA	chr14:58727523-58727789(+)$1	266	148	187	12.0713
GCUGACCUGUGUUUUUUUCUGUAGGGACCAAAGCAGUAU	chr10:102283561-102283856(-)$1	295	146	185	13.7743
GUGUGUUGUGUGUGUGCACACAUGUGCACGUACGCUCGC	chr1:38018086-38018376(-)$1	290	205	244	14.1924
GCCAGGUCACAGGUGCCAUCAUAGGcgccuguagugcca	chr15:44813499-44813822(+)$1	323	216	255	17.5869
AAAUUUUGUUAUGCAGUAACCUAAUUGUAUUCUUAGAUA	chr1:197104253-197104622(-)$1	369	214	253	15.8995
GCUCUCUGUUUCAGGGUCAUAAAGGAUUUCAUGAUUCAG	chr1:43126477-43126718(+)$1	241	41	80	13.5126
UGAACUGUGGCCCGGCAGAUCUGACUGUUGUUGCUGCUG	chrX:13336982-13337205(+)$1	223	147	186	13.4593
UGAAAACUGCAUGUUAAAAAAAUUGUAGUGAUGUUUUCA	chr12:99042513-99042758(+)$1	245	179	218	14.0397
CAAUAGGACCGUGUAUUUAAAUGUAUCUCGAACUAAUGG	chr5:90016601-90016853(+)$1	252	177	216	13.4430
GAAAGUGGCUGGGUACGACUGACUGUAGAUAACCGACUU	chr1:43126518-43126784(+)$1	266	214	253	12.9048
AACUUGUCUAAUUUCUGUGAUACAAAUGAUUGGACAAAU	chr8:95871738-95872021(+)$1	283	198	237	15.4645
GAAGUACAUAAGACCUUAUUUGGUAAGUUCAGGCUGUUC	chr10:94392339-94392661(+)$1	322	89	128	11.7208
CAGUGCAGCCUAAGUGAAGUGACUCAGUUAAUCUGUAUU	chr3:69111226-69111542(-)$1	316	27	66	17.9741
ACAUUUUAGCGGAGGGCACUUUGGUCGGCUGUUGUUGUU	chr5:89989526-89989817(+)$1	291	171	210	14.2419
UACAAAGUUAUUGGGACAUUCUUACGUACUGAUUAUAGC	chr1:89271339-89271604(+)$1	265	45	84	11.1880
AUGGUGAGUGAUCGCGUGUGAAACGAGUUAUUCAUGUCC	chr5:150079831-150080126(-)$1	295	118	157	12.8379
UGGUUCUAAUUAGUGUUAUUAAUAUAUAUUACGUUAGAG	chr6:136560831-136561114(-)$1	283	76	115	11.6004
GCACUCAUCGCUGUGGUUUUCCUGGCCAGUGGUGCAGUC	chr1:169435111-169435379(-)$1	268	188	227	13.1076
UUACAGAUGAUUCAUGUUAAUAUGCAGAAAGCUUGCUUU	chr6:83728458-83728792(-)$1	334	264	303	13.2435
ACCUGUUCUCGUGAAGUCUUAAAACUCUUAUAGAAUAGC	chrX:100646969-100647277(+)$1	308	239	278	13.4166
AGCUGCUGUUGACUACCAGAAAGUGGUUCGUGAAGCUGU	chr2:85768249-85768484(+)$1	235	180	219	15.1423
AUUCUACAUCAGUUUGGUUUCACUCAGACCGGUGAGCCC	chr6:135715725-135716001(-)$1	276	57	96	12.9473
AUUGAACUGUUUGGACACAGUACUGUCUUUCUGCUUUCA	chr6:52317572-52317833(+)$1	261	176	215	12.3101
UGUUCAACUAGGCAACUUAAAAUAGUUUUGCUUUAUGUA	chr3:196986942-196987263(-)$1	321	42	81	13.9362
AAUUUCCAUUGAGUAGUACCUUAGCUAUCCUUUGGUUAU	chr15:62315708-62316089(-)$1	381	271	310	15.4131
GAAUUUAUACUUGCUAUGUUUAAAUAUAAGUUUCUCUUU	chr15:66819589-66819872(+)$1	283	157	196	13.7631
GUGCUGAGGCAGUAUGUAUUAUCAACUUUCAACAUCUAA	chr6:101090263-101090557(-)$1	294	32	71	12.2669
AUUGGGGUUGUUAUAUUUAAAGUAGUAUAUAGACUGUGU	chr3:33886973-33887289(+)$1	316	222	261	14.4472
UAUUACAUAUUUCUCAAAUGUCUUGGUUUUAUGAAAUUC	chr1:6601722-6602007(-)$1	285	123	162	14.6802
UGACUAUGUAUAUUUUUUAGAUUAGAAAUGUAAAAAUAG	chr1:52940372-52940622(-)$1	250	166	205	16.2028
CAAAGCUUUCCACUUUGUUAAAUCAUGUAAGUUUAAGAU	chr5:37003346-37003647(+)$1	301	77	116	13.0477
AAGCCAAGAUAGCAAAGCUUGGACUUAAGCUGGGUUUGC	chr9:111714528-111714805(-)$1	277	166	205	13.8978
AACGUGAACCAGGAUUAGGAUUUAGUUUUGGUAUAUGUU	chr1:76193829-76194226(+)$1	397	314	353	14.3807
AAUUACAUUUUACUGUGGCUUUACUUAUUUAAAAAUGUG	chr6:149862592-149862896(-)$1	304	92	131	14.5849
UUUUUUAAAUAGGUGGAUCCUUUUCAUACCUUAUUUGGA	chr1:76260113-76260365(+)$1	252	69	108	13.8544
uagugucugugugucaugcuuuggugauucucagaauau	chr7:128128448-128128704(+)$1	256	40	79	13.3622
GGGGGGCAUAUUUUUAACGUUGUGUUCUAAAGAUAUGUC	chr11:46098181-46098409(-)$1	228	121	160	14.7066
AAUGAACAGUGCAAGCUGACCCCAUAGGCAUGCUUUACA	chr10:69647001-69647278(+)$1	277	19	58	10.6916
UCAGGAGAUUAUGGGAGAUUAUGCGAUCAUGUUUCCACA	chrX:122757456-122757695(-)$1	239	157	196	13.0366
UAAAUGUACACCAAGUAAUGUAAUACUUAAAAGAGAAAA	chr5:37064010-37064293(+)$1	283	149	188	15.7243
CAUUAUGGUACCUCUCAGAAGAGUGAGAGAGAGCUAUUA	chr2:85770052-85770335(+)$1	283	19	58	15.2996
UAUUUGAGGGAGCAAGGUAAAGCUCUUGUUUCUGAAGAA	chr2:225371602-225371876(-)$1	274	230	269	18.0461
AAUAAGGUUAAGCUUCGUGCAAUUGAGCGGUAUGUUGUU	chr6:136560452-136560727(-)$1	275	95	134	15.1494
UGCUUUUCAUUUCAUCAUCCAGAAUGCAGAAAUGAGUCG	chr2:61515576-61515920(-)$1	344	269	308	12.0944
AUGUUGUGCCAACUCUUUCUACCAGGAGUUGGAGAGGCA	chr2:160253486-160253837(-)$1	351	201	240	17.2296

#DB
.((((((((((((((((......))))))))))))))))	chr17:73138744-73139048(-)$1	1	50	89	18.2575
((((((((...(((((((.....)))))))..)))))))	chr4:123265342-123265646(+)$1	1	235	274	14.5033
...(((((...((((((......))))))....)).)))	chr8:68115366-68115692(-)$1	1	204	243	12.3644
.((((.(((.(((((((......)))..)))).))).))	chr10:70958193-70958474(+)$1	1	42	81	15.0101
..(((((.((((..(((......)))..)))))))))..	chr3:9475515-9475788(+)$1	1	38	77	15.2567
(((((((((((((((((......))).))))))).....	chr2:70068066-70068323(+)$1	1	110	149	16.3758
.(((((((((((((..(......)..)))))))))))))	chr12:22666188-22666446(-)$1	1	208	247	18.5820
((((((((((((.(.((......)))..)))))))))))	chr1:3549774-3550068(-)$1	1	223	262	17.9192
((.(((((....((.(((.....))).))....))))))	chr14:58727523-58727789(+)$1	1	148	187	12.0713
((((...((.((((((......))))))))...))))).	chr10:102283561-102283856(-)$1	1	146	185	13.7743
(.(((..((((((((((((....)))))))))))).)))	chr1:38018086-38018376(-)$1	1	205	244	14.1924
((..(((.(((((((((......)))))))))...))).	chr15:44813499-44813822(+)$1	1	216	255	17.5869
((((((....(((((((......)))))))....)))).	chr1:197104253-197104622(-)$1	1	214	253	15.8995
)))(((((..((((((((......)))))..)))..)))	chr1:43126477-43126718(+)$1	1	41	80	13.5126
.((((.(((((.((((((......))))))..))))).)	chrX:13336982-13337205(+)$1	1	147	186	13.4593
(((((((..(((..(((.....)))..)))..)))))))	chr12:99042513-99042758(+)$1	1	179	218	14.0397
((.(((...((.((((......))))..))..))).)))	chr5:90016601-90016853(+)$1	1	177	216	13.4430
.(((((((.((..((((......))))..)).)).))))	chr1:43126518-43126784(+)$1	1	214	253	12.9048
...((((((((((..(((...)))...))))))))))..	chr8:95871738-95872021(+)$1	1	198	237	15.4645
(((..(((...((.(((((...))))).))....)))..	chr10:94392339-94392661(+)$1	1	89	128	11.7208
((((((((..(((.(((......))).)))..)))))))	chr3:69111226-69111542(-)$1	1	27	66	17.9741
(((...((((((..(((......)))..)))))).))).	chr5:89989526-89989817(+)$1	1	171	210	14.2419
((...(((...(((((...)))))...)))...))))).	chr1:89271339-89271604(+)$1	1	45	84	11.1880
..(((((((((.(.(((.....))).))))))))...))	chr5:150079831-150080126(-)$1	1	118	157	12.8379
...(((((((((((((.........)))))).)))))))	chr6:136560831-136561114(-)$1	1	76	115	11.6004
(.(((((((((((.(.(......).))))))))).))))	chr1:169435111-169435379(-)$1	1	188	227	13.1076
((...)))))))))(((......)))(((((....))))	chr6:83728458-83728792(-)$1	1	264	303	13.2435
..(((((((.(((((((......))).))))))))))).	chrX:100646969-100647277(+)$1	1	239	278	13.4166
(((.(((..(((((((......)))).)))...))).))	chr2:85768249-85768484(+)$1	1	180	219	15.1423
(..((.((((.((((((......)))))).))))))...	chr6:135715725-135716001(-)$1	1	57	96	12.9473
..((((..((..(((((......)))))....)).))))	chr6:52317572-52317833(+)$1	1	176	215	12.3101
(((.((...((((((((......)))..)))))..)).)	chr3:196986942-196987263(-)$1	1	42	81	13.9362
(((..(((..(.(((((......))))).)..)))..))	chr15:62315708-62316089(-)$1	1	271	310	15.4131
(((.....(((((.(((......)))))))))))))..)	chr15:66819589-66819872(+)$1	1	157	196	13.7631
(((.((((..(((.((......))))))))).)))))))	chr6:101090263-101090557(-)$1	1	32	71	12.2669
)))))((((..((((((......))))))..))))((((	chr3:33886973-33887289(+)$1	1	222	261	14.4472
(((((((((((((..((((......))))...)))....	chr1:6601722-6602007(-)$1	1	123	162	14.6802
((.((((.(((((((((......)))))))))...))))	chr1:52940372-52940622(-)$1	1	166	205	16.2028
(.((((((...((..((......)).))))))))..)))	chr5:37003346-37003647(+)$1	1	77	116	13.0477
(((((....((((.(((......)))..)))))))))))	chr9:111714528-111714805(-)$1	1	166	205	13.8978
.(((((.((((((((((.....)))))))))).))))))	chr1:76193829-76194226(+)$1	1	314	353	14.3807
(((.(((((((...((((......))))...))))))))	chr6:149862592-149862896(-)$1	1	92	131	14.5849
..(((((((((((((((......)).)))).))))))))	chr1:76260113-76260365(+)$1	1	69	108	13.8544
(((((((((.(.(((((......))))).).))))....	chr7:128128448-128128704(+)$1	1	40	79	13.3622
(..(((((((((((((((.....))..))))))))))))	chr11:46098181-46098409(-)$1	1	121	160	14.7066
...)))))))(((.(((.........))).)))((((((	chr10:69647001-69647278(+)$1	1	19	58	10.6916
...((((((.((((..(......)..))))))))))..)	chrX:122757456-122757695(-)$1	1	157	196	13.0366
.((((((...(((((((......)))))....).)...)	chr5:37064010-37064293(+)$1	1	149	188	15.7243
..(.(((((.(((((((......)))))).).))))).)	chr2:85770052-85770335(+)$1	1	19	58	15.2996
(.(((..((((((((((......))))))))))..))))	chr2:225371602-225371876(-)$1	1	230	269	18.0461
(((((.((...(((.((......)))))...)).)))))	chr6:136560452-136560727(-)$1	1	95	134	15.1494
))))))(((((((..(((.....)))..)))))))))))	chr2:61515576-61515920(-)$1	1	269	308	12.0944
(((((...(((((((((......)))))))))...))))	chr2:160253486-160253837(-)$1	1	201	240	17.2296

#PSSM
e : 0.16	: : 0.09	c : 0.09	d : 0.09	i : 0.07	" : 0.07	f : 0.07	! : 0.07	[ : 0.05	g : 0.05	h : 0.05	= : 0.03	# : 0.01	m : 0.01	
e : 0.15	d : 0.11	= : 0.07	i : 0.07	: : 0.07	[ : 0.07	c : 0.07	g : 0.07	! : 0.07	" : 0.05	f : 0.05	h : 0.05	# : 0.01	m : 0.01	
e : 0.15	d : 0.11	c : 0.11	g : 0.09	= : 0.07	i : 0.07	[ : 0.05	! : 0.05	" : 0.05	h : 0.05	f : 0.03	: : 0.01	b : 0.01	# : 0.01	l : 0.01	m : 0.01	a : 0.01	
e : 0.16	= : 0.11	c : 0.11	g : 0.11	[ : 0.09	i : 0.07	d : 0.07	! : 0.05	f : 0.05	" : 0.03	b : 0.03	l : 0.01	$ : 0.01	h : 0.01	
e : 0.16	g : 0.15	c : 0.13	= : 0.11	d : 0.09	i : 0.07	" : 0.05	f : 0.05	! : 0.03	b : 0.03	a : 0.01	l : 0.01	$ : 0.01	h : 0.01	
c : 0.13	g : 0.13	= : 0.11	e : 0.11	d : 0.11	i : 0.09	[ : 0.07	" : 0.05	f : 0.05	! : 0.03	h : 0.01	b : 0.01	$ : 0.01	# : 0.01	
g : 0.15	= : 0.11	c : 0.11	e : 0.09	d : 0.09	i : 0.07	" : 0.07	f : 0.07	b : 0.05	! : 0.05	# : 0.03	h : 0.01	$ : 0.01	[ : 0.01	
= : 0.16	g : 0.15	b : 0.07	c : 0.07	e : 0.07	" : 0.07	d : 0.07	i : 0.05	[ : 0.05	! : 0.05	f : 0.05	# : 0.03	h : 0.01	$ : 0.01	
= : 0.16	" : 0.16	g : 0.13	! : 0.11	i : 0.09	d : 0.07	# : 0.05	e : 0.05	b : 0.03	f : 0.03	c : 0.01	[ : 0.01	h : 0.01	
= : 0.16	" : 0.13	[ : 0.11	g : 0.11	i : 0.09	! : 0.09	d : 0.05	e : 0.05	b : 0.05	# : 0.03	c : 0.03	f : 0.01	h : 0.01	
= : 0.15	c : 0.13	" : 0.11	d : 0.09	g : 0.09	i : 0.09	a : 0.07	f : 0.05	e : 0.05	b : 0.03	! : 0.03	# : 0.01	h : 0.01	[ : 0.01	
= : 0.15	c : 0.15	f : 0.13	d : 0.11	[ : 0.09	g : 0.07	i : 0.07	e : 0.05	! : 0.03	b : 0.03	# : 0.01	h : 0.01	" : 0.01	a : 0.01	
= : 0.13	f : 0.13	d : 0.13	e : 0.13	c : 0.11	g : 0.07	! : 0.07	i : 0.07	b : 0.05	[ : 0.01	a : 0.01	h : 0.01	" : 0.01	
[ : 0.15	f : 0.13	d : 0.13	! : 0.13	e : 0.13	= : 0.11	i : 0.07	g : 0.05	a : 0.01	b : 0.01	" : 0.01	c : 0.01	
c : 0.24	f : 0.13	e : 0.13	! : 0.11	= : 0.09	d : 0.09	[ : 0.05	i : 0.05	g : 0.03	a : 0.01	b : 0.01	
c : 0.30	f : 0.13	e : 0.13	= : 0.09	b : 0.09	d : 0.09	i : 0.05	g : 0.03	! : 0.03	[ : 0.01	
c : 0.30	e : 0.11	f : 0.09	b : 0.09	= : 0.07	o : 0.07	a : 0.05	i : 0.05	d : 0.05	g : 0.03	l : 0.01	r : 0.01	
o : 0.67	c : 0.05	n : 0.05	e : 0.03	r : 0.03	d : 0.03	g : 0.01	= : 0.01	f : 0.01	l : 0.01	b : 0.01	
o : 0.73	n : 0.13	l : 0.03	r : 0.03	= : 0.01	e : 0.01	d : 0.01	
o : 0.75	n : 0.13	l : 0.03	r : 0.03	m : 0.01	e : 0.01	
o : 0.75	n : 0.13	l : 0.03	r : 0.03	m : 0.01	e : 0.01	
o : 0.75	n : 0.13	r : 0.03	m : 0.01	c : 0.01	l : 0.01	e : 0.01	
o : 0.67	n : 0.07	c : 0.05	d : 0.03	e : 0.03	r : 0.03	f : 0.01	m : 0.01	b : 0.01	= : 0.01	
c : 0.28	b : 0.11	e : 0.11	f : 0.09	= : 0.07	o : 0.07	a : 0.05	i : 0.05	d : 0.05	g : 0.03	r : 0.03	
c : 0.28	f : 0.11	e : 0.11	b : 0.09	= : 0.07	d : 0.07	i : 0.05	g : 0.03	2 : 0.03	3 : 0.03	r : 0.03	] : 0.01	o : 0.01	
c : 0.26	f : 0.13	e : 0.11	d : 0.09	= : 0.07	2 : 0.07	i : 0.05	] : 0.05	g : 0.03	a : 0.03	3 : 0.03	r : 0.01	
2 : 0.18	e : 0.15	f : 0.13	= : 0.09	] : 0.09	d : 0.09	i : 0.05	c : 0.05	g : 0.03	3 : 0.03	a : 0.01	h : 0.01	b : 0.01	
2 : 0.16	= : 0.13	f : 0.13	e : 0.13	c : 0.11	d : 0.11	g : 0.07	i : 0.05	b : 0.03	] : 0.01	h : 0.01	
= : 0.15	f : 0.15	d : 0.15	g : 0.09	c : 0.09	b : 0.07	e : 0.07	i : 0.05	4 : 0.03	] : 0.03	3 : 0.03	2 : 0.01	h : 0.01	
= : 0.15	d : 0.13	g : 0.09	4 : 0.07	b : 0.07	f : 0.07	c : 0.07	i : 0.05	e : 0.05	] : 0.05	3 : 0.05	2 : 0.03	a : 0.03	h : 0.01	
= : 0.15	2 : 0.15	4 : 0.11	d : 0.11	3 : 0.11	f : 0.07	g : 0.05	i : 0.05	e : 0.05	] : 0.03	b : 0.01	h : 0.01	c : 0.01	a : 0.01	
= : 0.15	2 : 0.11	4 : 0.11	d : 0.11	g : 0.09	3 : 0.07	i : 0.07	] : 0.07	f : 0.05	c : 0.03	e : 0.03	h : 0.01	m : 0.01	b : 0.01	
g : 0.15	= : 0.13	3 : 0.11	e : 0.09	c : 0.09	4 : 0.07	b : 0.05	f : 0.05	h : 0.05	d : 0.05	i : 0.03	] : 0.03	m : 0.01	a : 0.01	
g : 0.16	e : 0.15	= : 0.11	c : 0.11	b : 0.05	3 : 0.05	f : 0.05	h : 0.05	d : 0.05	i : 0.03	4 : 0.03	2 : 0.03	] : 0.03	m : 0.01	
e : 0.16	g : 0.13	= : 0.11	c : 0.11	3 : 0.07	2 : 0.07	] : 0.07	d : 0.05	i : 0.03	b : 0.03	h : 0.03	> : 0.01	m : 0.01	f : 0.01	a : 0.01	
e : 0.22	c : 0.13	g : 0.13	= : 0.09	] : 0.05	d : 0.05	2 : 0.05	i : 0.03	> : 0.03	3 : 0.03	b : 0.03	h : 0.03	4 : 0.01	f : 0.01	F : 0.01	
e : 0.22	c : 0.13	g : 0.13	= : 0.09	d : 0.07	2 : 0.05	i : 0.03	] : 0.03	> : 0.03	3 : 0.03	4 : 0.03	h : 0.03	b : 0.01	f : 0.01	F : 0.01	
e : 0.16	c : 0.13	g : 0.13	d : 0.11	= : 0.07	3 : 0.05	] : 0.05	4 : 0.05	i : 0.03	> : 0.03	2 : 0.03	h : 0.03	b : 0.01	f : 0.01	F : 0.01	
d : 0.13	e : 0.11	g : 0.09	= : 0.07	c : 0.07	f : 0.07	4 : 0.07	] : 0.05	a : 0.05	h : 0.05	i : 0.03	3 : 0.03	> : 0.03	: : 0.03	b : 0.01	F : 0.01	

#score	760.1660198620847
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_CDS_m3_run1.txt

#BEAR
hhhddddqqqqqqqqdddd::	chr17:76116990-76117225(-)$1	235	190	211	12.4277
###ddddqqqqqqqqdddd66	chr1:203668567-203668888(+)$1	321	183	204	14.8186
iiiiiiiqqqqqqqqiiiiii	chr8:144998812-144999051(-)$1	239	169	190	14.0206
$$$$cccqqqqqqqqccc22g	chr7:154760171-154760469(-)$1	298	224	245	14.9431
eeeecccqqqqqqqqccc]ee	chr17:36865339-36865627(+)$1	288	233	254	14.3367
!a!!cccqqqqqqqqccc22a	chrM:15059-15282(+)$1	223	186	207	15.7119
iiii[bbqqqqqqqqbb]iii	chr5:70751517-70751808(+)$1	291	93	114	14.0895
[bb[cccqqqqqqqqcccbb]	chr19:1817133-1817391(-)$1	258	174	195	14.4170
gggggggqqqqqqqqgggggg	chr7:933243-933538(+)$1	295	147	168	13.8967
ccc[cccqqqqqqqqccc]cc	chr7:127013394-127013711(-)$1	317	71	92	15.1700
GGGddddqqqqqqqqddddbb	chr1:186325319-186325549(-)$1	230	114	135	12.6413
##eeeeeqqqqqqqqeeeee]	chr6:31727541-31727799(+)$1	258	172	193	13.9102
$$$ddddqqqqqqqqdddd33	chr17:77808449-77808700(-)$1	251	63	84	15.4316
:a[ddddqqqqqqqqdddd]a	chr3:37366552-37366862(+)$1	310	59	80	14.2447
[a!!ddddqqqqqqqqdddd2	chr8:144889647-144889940(-)$1	293	103	124	12.6553
eee!!bbqqqqqqqqbb22ee	chr19:10264870-10265089(-)$1	219	42	63	13.5042
dd[ddddqqqqqqqqdddddd	chr12:133384853-133385134(-)$1	281	211	232	14.2620
"ccc[bbqqqqqqqqbbccc6	chr9:117138807-117139076(-)$1	269	218	239	14.2854
"""ddddqqqqqqqqdddd22	chr3:167750206-167750529(-)$1	323	4	25	15.4027
!!bb[bbqqqqqqqqbb]bb2	chrX:39922001-39922267(-)$1	266	222	243	13.5684
!ffffffqqqqqqqqffffff	chr2:27606717-27606955(-)$1	238	160	181	13.1648
ccc!!bbqqqqqqqqbb22cc	chrX:53436297-53436531(-)$1	234	64	85	14.1218
iiiiiiiqqqqqqqqiiiiii	chr11:129992098-129992328(+)$1	230	8	29	14.0206
ddddcccqqqqqqqqccc]dd	chr5:70785345-70785619(+)$1	274	250	271	14.2691
cc[ddddqqqqqqqqddddcc	chr17:40271208-40271456(-)$1	248	112	133	14.8679
:ffffffqqqqqqqqffffff	chr1:35652737-35652952(-)$1	215	194	215	12.1393
(((ddddqqqqqqqqdddd>>	chr22:42017970-42018191(+)$1	221	92	113	13.2456
%%eeeeeqqqqqqqqeeeee2	chr16:89351878-89352124(-)$1	246	148	169	12.8356
FFcccbbqqqqqqqqbb]ccc	chr11:65820043-65820279(+)$1	236	91	112	13.2630
$$$$cccqqqqqqqqccc666	chr3:184040321-184040577(+)$1	256	197	218	14.1051
dd!!cccqqqqqqqqccc333	chr5:149751636-149751894(+)$1	258	148	169	15.8897
d[eeeeeqqqqqqqqeeeee2	chr7:1887153-1887406(-)$1	253	100	121	13.5166
gg[ddddqqqqqqqqdddd]g	chr17:38569100-38569308(-)$1	208	180	201	14.9265
!ccc[bbqqqqqqqqbb]ccc	chr11:71724184-71724435(-)$1	251	167	188	14.3837
"""ddddqqqqqqqqdddd44	chrX:53439746-53440050(-)$1	304	182	203	15.6646
!ffffffqqqqqqqqffffff	chr12:133372366-133372611(-)$1	245	138	159	13.1648
[bb[cccqqqqqqqqccc]bb	chr8:38854436-38854722(+)$1	286	212	233	14.4497
$$$ddddqqqqqqqqdddd33	chrX:122801909-122802165(-)$1	256	52	73	15.4316
iiiddddqqqqqqqqdddd22	chrM:14363-14574(-)$1	211	42	63	14.8529
&&&&cccqqqqqqqqccc333	chr4:104027331-104027573(-)$1	242	25	46	14.1022
gg:ddddqqqqqqqqdddd::	chr8:37720398-37720631(-)$1	233	64	85	12.3281
ccc"""aqqqqqqqqa333cc	chr15:69072334-69072584(-)$1	250	117	138	14.1822
ccc[cccqqqqqqqqccc22c	chr1:39750868-39751108(+)$1	240	107	128	15.1722
ddd[cccqqqqqqqqccc333	chr20:62624689-62624934(+)$1	245	172	193	15.5005
ffffcccqqqqqqqqccc333	chr9:139720130-139720374(+)$1	244	98	119	15.2823
ff[a[bbqqqqqqqqbbafff	chr16:4881949-4882240(-)$1	291	181	202	13.6519
eeee[bbqqqqqqqqbb]eee	chr1:32833967-32834238(-)$1	271	76	97	13.4515
dddd[bbqqqqqqqqbbdddd	chr17:42289157-42289403(-)$1	246	21	42	13.5473
dddddddqqqqqqqqdddd44	chr11:3023673-3023933(-)$1	260	187	208	14.7094
ffeeeeeqqqqqqqqeeeee]	chr11:3023091-3023381(-)$1	290	69	90	13.3269
e::ddddqqqqqqqqddddii	chr6:4032034-4032332(+)$1	298	87	108	12.8830
cccccbbqqqqqqqqbb]ccc	chr3:184043013-184043250(+)$1	237	108	129	14.1679
bb!!cccqqqqqqqqccc22b	chr6:136597344-136597631(-)$1	287	153	174	14.7218
:ffffffqqqqqqqqffffff	chr7:132973616-132973964(+)$1	348	54	75	12.1393
e[a[cccqqqqqqqqcccaee	chrM:11343-11551(+)$1	208	75	96	14.7966
d"""cccqqqqqqqqccc555	chr16:89357113-89357335(-)$1	222	28	49	13.6307
ccc[cccqqqqqqqqcccccc	chr19:6387314-6387566(-)$1	252	220	241	15.0706

#otherMatches

#Seq PSSM
UCCGGGUGUAUCCAAACCUAC	chr17:76116990-76117225(-)$1	235	190	211	12.4277
ACAGGAGCAAAAGUUCUCCAU	chr1:203668567-203668888(+)$1	321	183	204	14.8186
CUGCAGCGUGAGGCGGCUGCA	chr8:144998812-144999051(-)$1	239	169	190	14.0206
CACUUGAGUCAGACGUCACAG	chr7:154760171-154760469(-)$1	298	224	245	14.9431
GAUGGCCACUGAUCAGGCUCA	chr17:36865339-36865627(+)$1	288	233	254	14.3367
GGCUACUCAGUAGACAGUCCC	chrM:15059-15282(+)$1	223	186	207	15.7119
AGGGCGUAGUUCCUAAUCCCC	chr5:70751517-70751808(+)$1	291	93	114	14.0895
GUGAGGCUGUUCUCUGCCCAG	chr19:1817133-1817391(-)$1	258	174	195	14.4170
UGUUCACUGUGCUGUGUGAGC	chr7:933243-933538(+)$1	295	147	168	13.8967
CAUAGUGAUUCAAAACAUGAU	chr7:127013394-127013711(-)$1	317	71	92	15.1700
UUGCCAUUCCAUUACAUGGUA	chr1:186325319-186325549(-)$1	230	114	135	12.6413
CUCCCCACAAGUCCUUGGGGU	chr6:31727541-31727799(+)$1	258	172	193	13.9102
AUACAUGGAGAACGGCAUGCA	chr17:77808449-77808700(-)$1	251	63	84	15.4316
AAGAUCCUCCUAUUUGGGUGU	chr3:37366552-37366862(+)$1	310	59	80	14.2447
UGGUGGUCUUGGCGGUGGCUA	chr8:144889647-144889940(-)$1	293	103	124	12.6553
CUUCGCAGAGCAAAUUGAAAA	chr19:10264870-10265089(-)$1	219	42	63	13.5042
GUCUCUGGCCGAUUACAGAAC	chr12:133384853-133385134(-)$1	281	211	232	14.2620
GCAGUGGAGAAGCAGCCCUGG	chr9:117138807-117139076(-)$1	269	218	239	14.2854
CAAUCCAACAAGAAGUGGAAC	chr3:167750206-167750529(-)$1	323	4	25	15.4027
GAUUGCCACUGACAGGGGAAU	chrX:39922001-39922267(-)$1	266	222	243	13.5684
AGUCUUGAAAAGCCACAAGGC	chr2:27606717-27606955(-)$1	238	160	181	13.1648
GCAGCCCCUGAUGAUGGAAUG	chrX:53436297-53436531(-)$1	234	64	85	14.1218
CUGUUUUUGUGUUUCAGAAUA	chr11:129992098-129992328(+)$1	230	8	29	14.0206
GAUAGCAAUUAAUGAUGCUUA	chr5:70785345-70785619(+)$1	274	250	271	14.2691
GGCAGCUGCUGGAAAAGUUCC	chr17:40271208-40271456(-)$1	248	112	133	14.8679
CUGGUGGAGUUGUAACCACUA	chr1:35652737-35652952(-)$1	215	194	215	12.1393
GAACAAGAAGAGAACCUUGAA	chr22:42017970-42018191(+)$1	221	92	113	13.2456
AAGGCCUCAAGCACAAGGCCA	chr16:89351878-89352124(-)$1	246	148	169	12.8356
GCCCUGCAGGUAAUCGCGAGG	chr11:65820043-65820279(+)$1	236	91	112	13.2630
GUAUGCUGAAGAAAGGGUUGA	chr3:184040321-184040577(+)$1	256	197	218	14.1051
GGGACACGAAGCCAGGUGAGG	chr5:149751636-149751894(+)$1	258	148	169	15.8897
CAGGCUUUGGGAGAUGGGCCG	chr7:1887153-1887406(-)$1	253	100	121	13.5166
UAAGUUUAAAAUGCAAAGCCU	chr17:38569100-38569308(-)$1	208	180	201	14.9265
GGCAGAGAAGGCCAGCUAUGC	chr11:71724184-71724435(-)$1	251	167	188	14.3837
agauugagaaggagaUCAAGU	chrX:53439746-53440050(-)$1	304	182	203	15.6646
AAGUUAAGAGAAGAAUUAGCU	chr12:133372366-133372611(-)$1	245	138	159	13.1648
GUGGGCCCAGUCCUCGGUGCG	chr8:38854436-38854722(+)$1	286	212	233	14.4497
AAGCUAAGCAAAUUGUUAGAA	chrX:122801909-122802165(-)$1	256	52	73	15.4316
GAGGUUAUAUGGGUUUAAUAG	chrM:14363-14574(-)$1	211	42	63	14.8529
UUUCCACUUCCAGCUGUGCUU	chr4:104027331-104027573(-)$1	242	25	46	14.1022
UGGUCCUCAAACAGAAGGAAA	chr8:37720398-37720631(-)$1	233	64	85	12.3281
CAGAAGCGAAAACGAGAACCU	chr15:69072334-69072584(-)$1	250	117	138	14.1822
UUGCUGCUACAGAUUGCAAAC	chr1:39750868-39751108(+)$1	240	107	128	15.1722
GUGUGCGGUUUCUAACGCUCU	chr20:62624689-62624934(+)$1	245	172	193	15.5005
AGCCACGGAUGACAUCGUGAA	chr9:139720130-139720374(+)$1	244	98	119	15.2823
AGAGAGGCUCCAAAUCCCCUC	chr16:4881949-4882240(-)$1	291	181	202	13.6519
CGUGGUUCCAGGCUCAAGCAC	chr1:32833967-32834238(-)$1	271	76	97	13.4515
CUCUGCAGGAGAUCAUGAGAG	chr17:42289157-42289403(-)$1	246	21	42	13.5473
GGGCUCUACUGGGCAGGAGUG	chr11:3023673-3023933(-)$1	260	187	208	14.7094
CAGUGACUGUGCCGUGUUGCG	chr11:3023091-3023381(-)$1	290	69	90	13.3269
UAAUGGAAGGAAAGGUCCAGU	chr6:4032034-4032332(+)$1	298	87	108	12.8830
CAUCCGCUUUAUGCUGCAGGA	chr3:184043013-184043250(+)$1	237	108	129	14.1679
UGAUUCAGAAGGGGAUGACAC	chr6:136597344-136597631(-)$1	287	153	174	14.7218
UGUAGGUAAAAGAGAACCUGC	chr7:132973616-132973964(+)$1	348	54	75	12.1393
AUGUCGAAGCCCCCAUCGCUG	chrM:11343-11551(+)$1	208	75	96	14.7966
GGGCUCUUGAAGAUUGGACAA	chr16:89357113-89357335(-)$1	222	28	49	13.6307
GCCAUGGAUAUAUCAccaggc	chr19:6387314-6387566(-)$1	252	220	241	15.0706

#DB
)))((((........))))..	chr17:76116990-76117225(-)$1	1	190	211	12.4277
...((((........))))..	chr1:203668567-203668888(+)$1	1	183	204	14.8186
(((((((........))))))	chr8:144998812-144999051(-)$1	1	169	190	14.0206
....(((........)))..)	chr7:154760171-154760469(-)$1	1	224	245	14.9431
(((((((........))).))	chr17:36865339-36865627(+)$1	1	233	254	14.3367
.(..(((........)))..)	chrM:15059-15282(+)$1	1	186	207	15.7119
((((.((........)).)))	chr5:70751517-70751808(+)$1	1	93	114	14.0895
.((.(((........))))).	chr19:1817133-1817391(-)$1	1	174	195	14.4170
(((((((........))))))	chr7:933243-933538(+)$1	1	147	168	13.8967
(((.(((........))).))	chr7:127013394-127013711(-)$1	1	71	92	15.1700
)))((((........))))((	chr1:186325319-186325549(-)$1	1	114	135	12.6413
..(((((........))))).	chr6:31727541-31727799(+)$1	1	172	193	13.9102
...((((........))))..	chr17:77808449-77808700(-)$1	1	63	84	15.4316
.(.((((........)))).)	chr3:37366552-37366862(+)$1	1	59	80	14.2447
.(..((((........)))).	chr8:144889647-144889940(-)$1	1	103	124	12.6553
(((..((........))..))	chr19:10264870-10265089(-)$1	1	42	63	13.5042
((.((((........))))))	chr12:133384853-133385134(-)$1	1	211	232	14.2620
.(((.((........))))).	chr9:117138807-117139076(-)$1	1	218	239	14.2854
...((((........))))..	chr3:167750206-167750529(-)$1	1	4	25	15.4027
..((.((........)).)).	chrX:39922001-39922267(-)$1	1	222	243	13.5684
.((((((........))))))	chr2:27606717-27606955(-)$1	1	160	181	13.1648
(((..((........))..))	chrX:53436297-53436531(-)$1	1	64	85	14.1218
(((((((........))))))	chr11:129992098-129992328(+)$1	1	8	29	14.0206
(((((((........))).))	chr5:70785345-70785619(+)$1	1	250	271	14.2691
((.((((........))))))	chr17:40271208-40271456(-)$1	1	112	133	14.8679
.((((((........))))))	chr1:35652737-35652952(-)$1	1	194	215	12.1393
...((((........))))..	chr22:42017970-42018191(+)$1	1	92	113	13.2456
..(((((........))))).	chr16:89351878-89352124(-)$1	1	148	169	12.8356
(((((((........)).)))	chr11:65820043-65820279(+)$1	1	91	112	13.2630
....(((........)))...	chr3:184040321-184040577(+)$1	1	197	218	14.1051
((..(((........)))...	chr5:149751636-149751894(+)$1	1	148	169	15.8897
(.(((((........))))).	chr7:1887153-1887406(-)$1	1	100	121	13.5166
((.((((........)))).)	chr17:38569100-38569308(-)$1	1	180	201	14.9265
.(((.((........)).)))	chr11:71724184-71724435(-)$1	1	167	188	14.3837
...((((........))))..	chrX:53439746-53440050(-)$1	1	182	203	15.6646
.((((((........))))))	chr12:133372366-133372611(-)$1	1	138	159	13.1648
.((.(((........))).))	chr8:38854436-38854722(+)$1	1	212	233	14.4497
...((((........))))..	chrX:122801909-122802165(-)$1	1	52	73	15.4316
(((((((........))))..	chrM:14363-14574(-)$1	1	42	63	14.8529
....(((........)))...	chr4:104027331-104027573(-)$1	1	25	46	14.1022
)).((((........))))..	chr8:37720398-37720631(-)$1	1	64	85	12.3281
(((...(........)...))	chr15:69072334-69072584(-)$1	1	117	138	14.1822
(((.(((........)))..)	chr1:39750868-39751108(+)$1	1	107	128	15.1722
(((.(((........)))...	chr20:62624689-62624934(+)$1	1	172	193	15.5005
(((((((........)))...	chr9:139720130-139720374(+)$1	1	98	119	15.2823
((.(.((........))))))	chr16:4881949-4882240(-)$1	1	181	202	13.6519
((((.((........)).)))	chr1:32833967-32834238(-)$1	1	76	97	13.4515
((((.((........))))))	chr17:42289157-42289403(-)$1	1	21	42	13.5473
(((((((........))))..	chr11:3023673-3023933(-)$1	1	187	208	14.7094
(((((((........))))).	chr11:3023091-3023381(-)$1	1	69	90	13.3269
)..((((........))))((	chr6:4032034-4032332(+)$1	1	87	108	12.8830
(((((((........)).)))	chr3:184043013-184043250(+)$1	1	108	129	14.1679
((..(((........)))..)	chr6:136597344-136597631(-)$1	1	153	174	14.7218
.((((((........))))))	chr7:132973616-132973964(+)$1	1	54	75	12.1393
(.(.(((........))))))	chrM:11343-11551(+)$1	1	75	96	14.7966
(...(((........)))...	chr16:89357113-89357335(-)$1	1	28	49	13.6307
(((.(((........))))))	chr19:6387314-6387566(-)$1	1	220	241	15.0706

#PSSM
d : 0.14	c : 0.12	e : 0.08	! : 0.08	i : 0.07	$ : 0.07	[ : 0.05	g : 0.05	: : 0.05	" : 0.05	f : 0.05	# : 0.03	h : 0.01	G : 0.01	( : 0.01	% : 0.01	F : 0.01	& : 0.01	b : 0.01	
c : 0.15	f : 0.12	d : 0.10	i : 0.07	$ : 0.07	e : 0.05	a : 0.05	b : 0.05	g : 0.05	" : 0.05	# : 0.03	[ : 0.03	h : 0.01	G : 0.01	! : 0.01	( : 0.01	% : 0.01	F : 0.01	& : 0.01	: : 0.01	
c : 0.15	e : 0.12	[ : 0.08	f : 0.08	i : 0.07	$ : 0.07	! : 0.07	d : 0.07	b : 0.05	" : 0.05	: : 0.03	h : 0.01	# : 0.01	g : 0.01	G : 0.01	( : 0.01	& : 0.01	a : 0.01	
d : 0.31	[ : 0.12	e : 0.10	! : 0.10	f : 0.08	c : 0.07	i : 0.05	$ : 0.03	" : 0.03	g : 0.01	b : 0.01	& : 0.01	a : 0.01	
c : 0.33	d : 0.29	[ : 0.12	e : 0.07	f : 0.07	i : 0.03	! : 0.03	g : 0.01	" : 0.01	
d : 0.29	c : 0.29	b : 0.19	e : 0.07	f : 0.07	i : 0.03	g : 0.01	" : 0.01	
d : 0.29	c : 0.29	b : 0.19	e : 0.07	f : 0.07	i : 0.03	g : 0.01	a : 0.01	
q : 0.98	d : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.29	d : 0.28	b : 0.19	e : 0.07	f : 0.07	i : 0.03	g : 0.01	q : 0.01	a : 0.01	
d : 0.29	c : 0.29	b : 0.19	e : 0.07	f : 0.07	i : 0.03	g : 0.01	3 : 0.01	
d : 0.31	c : 0.31	] : 0.10	e : 0.07	f : 0.07	i : 0.03	2 : 0.03	g : 0.01	3 : 0.01	a : 0.01	
d : 0.31	2 : 0.10	e : 0.08	c : 0.08	f : 0.08	3 : 0.08	] : 0.07	i : 0.05	b : 0.03	g : 0.01	6 : 0.01	a : 0.01	5 : 0.01	
c : 0.15	e : 0.14	2 : 0.10	3 : 0.10	f : 0.08	i : 0.07	b : 0.07	d : 0.07	: : 0.03	6 : 0.03	] : 0.03	4 : 0.03	g : 0.01	> : 0.01	5 : 0.01	
c : 0.15	3 : 0.10	2 : 0.10	f : 0.08	i : 0.07	e : 0.07	6 : 0.05	g : 0.05	] : 0.05	b : 0.05	d : 0.05	: : 0.03	a : 0.03	4 : 0.03	> : 0.01	5 : 0.01	

#score	804.7177417191289
#seq	57
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_UTR_m2_run2.txt

#BEAR
fffffxxxxxxxxxxxxxxxffffff	chr17:4594451-4594777(-)$1	326	284	310	17.0651
eeeeevvvvvvvvvvvvveeeee22c	chr17:74732094-74732346(-)$1	252	10	36	24.5338
dd!!ccctttttttttttccc]dddd	chr11:65632558-65632818(+)$1	260	39	65	21.2308
fffffvvvvvvvvvvvvvffffff:E	chr3:52723121-52723400(+)$1	279	191	217	22.3196
eeeeevvvvvvvvvvvvveeeee]a]	chr14:31028432-31028726(+)$1	294	38	64	24.3341
!adddduuuuuuuuuuuudddd22a2	chr3:48670937-48671266(-)$1	329	216	242	22.4754
[a!!bbuuuuuuuuuuuubb22a]ff	chr12:49499589-49499852(-)$1	263	29	55	21.8620
!eeeeeuuuuuuuuuuuueeeee]bb	chr16:50342068-50342369(+)$1	301	22	48	23.6915
!ddddvvvvvvvvvvvvvdddd22bb	chr9:86593082-86593348(-)$1	266	163	189	22.9601
fffffvvvvvvvvvvvvvffffffbb	chr2:97277978-97278251(-)$1	273	139	165	23.4519
ffyyyyyyyyyyyyyyyyffffff33	chr8:144657590-144657827(-)$1	237	19	45	20.8004
b!!bbuuuuuuuuuuuubb22bb333	chr1:153719715-153719988(+)$1	273	29	55	21.2698
fffffuuuuuuuuuuuuffffff22f	chr7:44838727-44838994(+)$1	267	157	183	22.8062
[eeeeeuuuuuuuuuuuueeeeeccc	chr3:52028857-52029147(-)$1	290	95	121	23.7587
""eeeeettttttttttteeeee22g	chrX:147014091-147014401(+)$1	310	263	289	22.7235
ddddwwwwwwwwwwwwwwdddd8888	chr12:46760846-46761094(-)$1	248	75	101	20.5966
!!cccvvvvvvvvvvvvvcccccc]c	chr19:17865091-17865384(+)$1	293	11	37	23.8569
fffffvvvvvvvvvvvvvffffff44	chr19:8538966-8539315(+)$1	349	292	318	23.9323
DDcccuuuuuuuuuuuucccffffff	chr14:23302508-23302759(+)$1	251	127	153	19.9563
!!dddduuuuuuuuuuuudddd22dd	chr19:54646754-54646991(+)$1	237	114	140	22.4460
ffffwwwwwwwwwwwwwwffffff]a	chr14:20917090-20917379(-)$1	289	15	41	22.9505
======uuuuuuuuuuuu========	chr6:30879425-30879694(+)$1	269	37	63	23.2670
[ddddvvvvvvvvvvvvvdddd333b	chr1:1685513-1685791(-)$1	278	193	219	23.8946
dd!!attttttttttta22dddd22b	chr1:155947799-155948078(-)$1	279	59	85	20.6539
fffffvvvvvvvvvvvvvffffff]a	chr1:54395422-54395677(-)$1	255	63	89	24.0359
gggggggtttttttttttggggggg:	chr12:112845990-112846296(-)$1	306	241	267	21.2367
gggggxxxxxxxxxxxxxxxgggggg	chr12:69980447-69980707(+)$1	260	196	222	17.4567
eeeewwwwwwwwwwwwwweeeee666	chr11:46404282-46404534(+)$1	252	159	185	22.0785
dd!!auuuuuuuuuuuua22dddd22	chr15:69715543-69715879(+)$1	336	144	170	21.8880
$eeeeettttttttttteeeee333d	chr3:49051474-49051806(+)$1	332	70	96	22.6028
fffffftttttttttttffffff:::	chr11:46397446-46397733(+)$1	287	92	118	19.5144
##eeeeettttttttttteeeee]cc	chr4:83276239-83276528(-)$1	289	256	282	22.5454
eeeeeuuuuuuuuuuuueeeeebb]c	chr1:249151726-249152051(-)$1	325	294	320	22.6828
gggggggtttttttttttggggggge	chr10:121341826-121342100(-)$1	274	184	210	21.7949
gg[bbvvvvvvvvvvvvvbbgggggg	chr5:138629426-138629738(+)$1	312	31	57	23.1368
ffffffuuuuuuuuuuuuffffff:f	chr21:46915220-46915556(+)$1	336	194	220	22.3399
[a[bbtttttttttttbb]a]eeeee	chr19:16187719-16187997(+)$1	278	76	102	19.9954
[cccwwwwwwwwwwwwwwccc]bb]e	chr17:74731096-74731346(-)$1	250	86	112	22.1676
dd[bbyyyyyyyyyyyyyyyybb]dd	chr14:21461223-21461558(+)$1	335	69	95	19.4026
[a[ddddtttttttttttdddd]a]d	chr12:56554057-56554303(+)$1	246	135	161	21.7685
=======ttttttttttt========	chr16:28222767-28223020(-)$1	253	86	112	21.9619
hhhhhvvvvvvvvvvvvvhhhhhhhh	chr2:38795166-38795419(-)$1	253	124	150	20.8777
gggggggtttttttttttggggggg:	chr11:47189474-47189753(-)$1	279	6	32	21.2367
gggggggtttttttttttgggggggc	chr17:45696980-45697340(+)$1	360	237	263	21.9593
gggggvvvvvvvvvvvvvgggggggC	chr16:279025-279347(-)$1	322	213	239	23.1869
[ddddvvvvvvvvvvvvvdddd]ddd	chr1:118482006-118482310(+)$1	304	73	99	22.8550
eeeeewwwwwwwwwwwwwweeeeeee	chr14:35872858-35873088(-)$1	230	57	83	22.5092
ffffffuuuuuuuuuuuuffffff]b	chr17:4585642-4585921(-)$1	279	136	162	23.3115
eeeeeuuuuuuuuuuuueeeeebb!!	chr7:151891173-151891451(-)$1	278	115	141	21.8408
dd[bbuuuuuuuuuuuubb22ddddc	chr12:69759302-69759614(+)$1	312	283	309	20.7954
##eeeeettttttttttteeeee22b	chr7:102952232-102952446(+)$1	214	132	158	22.6278
fffffvvvvvvvvvvvvvffffff::	chr12:50479354-50479622(+)$1	268	189	215	22.3839
eeeeeeettttttttttteeeee22e	chr12:6977831-6978144(+)$1	313	262	288	22.6270
ffff[cccuuuuuuuuuuuuccc22f	chr22:20907325-20907597(+)$1	272	184	210	19.3502
eeexxxxxxxxxxxxxxxeeeee]cc	chr6:31730662-31730927(+)$1	265	237	263	17.7135

#otherMatches

#Seq PSSM
CCCAGAUGUCCUAUUCCACCCUGGGA	chr17:4594451-4594777(-)$1	326	284	310	17.0651
UCCUCCCCCAGUGUCCAAGAGGGAAU	chr17:74732094-74732346(-)$1	252	10	36	24.5338
AGGAGCCAUCAAGAAUAAGGUACUGU	chr11:65632558-65632818(+)$1	260	39	65	21.2308
CUCUGAUCUCAGCAAAGCCAGAGUAC	chr3:52723121-52723400(+)$1	279	191	217	22.3196
UCUCCUUGGUGAGUAAAUGGGGAACG	chr14:31028432-31028726(+)$1	294	38	64	24.3341
ACUGCUGUCUGCAACACAAGCAAUGG	chr3:48670937-48671266(-)$1	329	216	242	22.4754
AGGGAGCACAUUGUAAUACUAACGGC	chr12:49499589-49499852(-)$1	263	29	55	21.8620
UGGGCCACAGUUUUCACAGGUCCCCU	chr16:50342068-50342369(+)$1	301	22	48	23.6915
CCCGUUUAAUAAAAGAAUAUGGAAAC	chr9:86593082-86593348(-)$1	266	163	189	22.9601
UCUUCUUUCUCUUCCCAUGAAGAUUC	chr2:97277978-97278251(-)$1	273	139	165	23.4519
UGGGUGGCGUCUAUAAGGUAGGGACA	chr8:144657590-144657827(-)$1	237	19	45	20.8004
UUUCCUUUAGUUGGUGUGGUUGGUAC	chr1:153719715-153719988(+)$1	273	29	55	21.2698
AUUUUCUAAGUUUAACAAAGAUGUUC	chr7:44838727-44838994(+)$1	267	157	183	22.8062
UGCACUGAAUCACAUGGAAGUGUCUU	chr3:52028857-52029147(-)$1	290	95	121	23.7587
AAUUCCAUUUUUUCUUACUGGAGGGU	chrX:147014091-147014401(+)$1	310	263	289	22.7235
AAUGUAUACCUAUCAUUUUAUUUCUC	chr12:46760846-46761094(-)$1	248	75	101	20.5966
AAGCAUUccuucuuauuuugcagaug	chr19:17865091-17865384(+)$1	293	11	37	23.8569
UUGAAUUGCCUUAAAUAUUUCAAAAA	chr19:8538966-8539315(+)$1	349	292	318	23.9323
CUGCUCCCCCAAUGAAAGGCCAGCUU	chr14:23302508-23302759(+)$1	251	127	153	19.9563
UGCCUCAAGAAGGUGUCCGAGGGCGU	chr19:54646754-54646991(+)$1	237	114	140	22.4460
GUAAUUGUCUGGAUCGUUUUGCUCGA	chr14:20917090-20917379(-)$1	289	15	41	22.9505
UUACUCUGUGGAAGGUAUGAGUGAUU	chr6:30879425-30879694(+)$1	269	37	63	23.2670
CGGGGCCUCCAUGAUCCACCCCAACG	chr1:1685513-1685791(-)$1	278	193	219	23.8946
gggacgggguggguggggacugcgag	chr1:155947799-155948078(-)$1	279	59	85	20.6539
AGAAGGCAUAUAUGUAAACUUUUGGC	chr1:54395422-54395677(-)$1	255	63	89	24.0359
CUUCGCAAAAUGGUAAGAUGUGGGGA	chr12:112845990-112846296(-)$1	306	241	267	21.2367
GCUUGGUGGAAAUAUAAUAACAAGCG	chr12:69980447-69980707(+)$1	260	196	222	17.4567
CCUGGAAAAGUCUGAAGAUGGGCACU	chr11:46404282-46404534(+)$1	252	159	185	22.0785
ccuucuuagcuguuaauguuggggaa	chr15:69715543-69715879(+)$1	336	144	170	21.8880
ACCAGGUAAUAUAUGCUCCUGGGCAG	chr3:49051474-49051806(+)$1	332	70	96	22.6028
GGGGCUGAAGCAGCCGGGGCCCCCUU	chr11:46397446-46397733(+)$1	287	92	118	19.5144
UAUUAACAAGUCAGUAAAGUUAACAG	chr4:83276239-83276528(-)$1	289	256	282	22.5454
UCUCCAGGGUAAGAGGAGGAGACUUC	chr1:249151726-249152051(-)$1	325	294	320	22.6828
AGUUUGUAUUCUUUCUAGGCAAAUUU	chr10:121341826-121342100(-)$1	274	184	210	21.7949
AGAGGUAccucuccuuuucccucucc	chr5:138629426-138629738(+)$1	312	31	57	23.1368
CUGGGGUCCUGCAGCUCCUCCCAGAG	chr21:46915220-46915556(+)$1	336	194	220	22.3399
GGGUGGAGAAGUGGAGCGGCGGGAGG	chr19:16187719-16187997(+)$1	278	76	102	19.9954
UUCUUUCUUUUCAAACCUAGAUGUAU	chr17:74731096-74731346(-)$1	250	86	112	22.1676
CAGCAUUUCAGCCACAAACUUUGAUG	chr14:21461223-21461558(+)$1	335	69	95	19.4026
GGGCUCCAAAAAGAGCCAGGAGGCAA	chr12:56554057-56554303(+)$1	246	135	161	21.7685
CUUUUUCAGUUUCCUUGGGGAGGGGC	chr16:28222767-28223020(-)$1	253	86	112	21.9619
ACCAUCACAGAAACAUUCAUGGUAAU	chr2:38795166-38795419(-)$1	253	124	150	20.8777
GUGAGUGCAAAAUCCUCUCGCUCGCA	chr11:47189474-47189753(-)$1	279	6	32	21.2367
UAUAGUGUUGGGAUAAUGUACUGUAG	chr17:45696980-45697340(+)$1	360	237	263	21.9593
GCCGGGCCUUUGUCUAAGCCGGUGCG	chr16:279025-279347(-)$1	322	213	239	23.1869
AAUCUUUUUAUAUUCUAUAGGUAUGG	chr1:118482006-118482310(+)$1	304	73	99	22.8550
UGGGGUUUUUCCCUCUCUUCCCCACA	chr14:35872858-35873088(-)$1	230	57	83	22.5092
UGCACUCUUCUCCCCACCAGUGUAAG	chr17:4585642-4585921(-)$1	279	136	162	23.3115
UGGAAAAUUAUAUAAAAUUCCAGGUA	chr7:151891173-151891451(-)$1	278	115	141	21.8408
AUAUGAAAUUACUGAAACAGGAUGGG	chr12:69759302-69759614(+)$1	312	283	309	20.7954
UUGGGUCAUGUGUAAAAAGAUCCUUG	chr7:102952232-102952446(+)$1	214	132	158	22.6278
CUGGGUGGGUGAAGUGGGUCCAGGGA	chr12:50479354-50479622(+)$1	268	189	215	22.3839
CUGUGGCUGCGCAGAACUGCUACAAA	chr12:6977831-6978144(+)$1	313	262	288	22.6270
AGGUGGCAAGAAUGACAUAGUGCAUG	chr22:20907325-20907597(+)$1	272	184	210	19.3502
GGGGACAAGCCGCCAAGACCCAGGGG	chr6:31730662-31730927(+)$1	265	237	263	17.7135

#DB
(((((...............))))))	chr17:4594451-4594777(-)$1	1	284	310	17.0651
(((((.............)))))..)	chr17:74732094-74732346(-)$1	1	10	36	24.5338
((..(((...........))).))))	chr11:65632558-65632818(+)$1	1	39	65	21.2308
(((((.............)))))).)	chr3:52723121-52723400(+)$1	1	191	217	22.3196
(((((.............))))).).	chr14:31028432-31028726(+)$1	1	38	64	24.3341
.(((((............))))..).	chr3:48670937-48671266(-)$1	1	216	242	22.4754
.(..((............))..).))	chr12:49499589-49499852(-)$1	1	29	55	21.8620
.(((((............))))).))	chr16:50342068-50342369(+)$1	1	22	48	23.6915
.((((.............))))..))	chr9:86593082-86593348(-)$1	1	163	189	22.9601
(((((.............))))))((	chr2:97277978-97278251(-)$1	1	139	165	23.4519
((................))))))..	chr8:144657590-144657827(-)$1	1	19	45	20.8004
(..((............))..))...	chr1:153719715-153719988(+)$1	1	29	55	21.2698
(((((............))))))..)	chr7:44838727-44838994(+)$1	1	157	183	22.8062
.(((((............))))))))	chr3:52028857-52029147(-)$1	1	95	121	23.7587
..(((((...........)))))..)	chrX:147014091-147014401(+)$1	1	263	289	22.7235
((((..............))))....	chr12:46760846-46761094(-)$1	1	75	101	20.5966
..(((.............)))))).)	chr19:17865091-17865384(+)$1	1	11	37	23.8569
(((((.............))))))..	chr19:8538966-8539315(+)$1	1	292	318	23.9323
(((((............)))((((((	chr14:23302508-23302759(+)$1	1	127	153	19.9563
..((((............))))..))	chr19:54646754-54646991(+)$1	1	114	140	22.4460
((((..............)))))).)	chr14:20917090-20917379(-)$1	1	15	41	22.9505
((((((............))))))))	chr6:30879425-30879694(+)$1	1	37	63	23.2670
.((((.............))))...)	chr1:1685513-1685791(-)$1	1	193	219	23.8946
((..(...........)..))))..)	chr1:155947799-155948078(-)$1	1	59	85	20.6539
(((((.............)))))).)	chr1:54395422-54395677(-)$1	1	63	89	24.0359
(((((((...........))))))).	chr12:112845990-112846296(-)$1	1	241	267	21.2367
(((((...............))))))	chr12:69980447-69980707(+)$1	1	196	222	17.4567
((((..............)))))...	chr11:46404282-46404534(+)$1	1	159	185	22.0785
((..(............)..))))..	chr15:69715543-69715879(+)$1	1	144	170	21.8880
.(((((...........)))))...)	chr3:49051474-49051806(+)$1	1	70	96	22.6028
((((((...........))))))...	chr11:46397446-46397733(+)$1	1	92	118	19.5144
..(((((...........))))).))	chr4:83276239-83276528(-)$1	1	256	282	22.5454
(((((............))))))).)	chr1:249151726-249152051(-)$1	1	294	320	22.6828
(((((((...........))))))))	chr10:121341826-121342100(-)$1	1	184	210	21.7949
((.((.............))))))))	chr5:138629426-138629738(+)$1	1	31	57	23.1368
((((((............)))))).(	chr21:46915220-46915556(+)$1	1	194	220	22.3399
.(.((...........)).).)))))	chr19:16187719-16187997(+)$1	1	76	102	19.9954
.(((..............))).)).)	chr17:74731096-74731346(-)$1	1	86	112	22.1676
((.((................)).))	chr14:21461223-21461558(+)$1	1	69	95	19.4026
.(.((((...........)))).).)	chr12:56554057-56554303(+)$1	1	135	161	21.7685
(((((((...........))))))))	chr16:28222767-28223020(-)$1	1	86	112	21.9619
(((((.............))))))))	chr2:38795166-38795419(-)$1	1	124	150	20.8777
(((((((...........))))))).	chr11:47189474-47189753(-)$1	1	6	32	21.2367
(((((((...........)))))))(	chr17:45696980-45697340(+)$1	1	237	263	21.9593
(((((.............))))))))	chr16:279025-279347(-)$1	1	213	239	23.1869
.((((.............)))).)))	chr1:118482006-118482310(+)$1	1	73	99	22.8550
(((((..............)))))((	chr14:35872858-35873088(-)$1	1	57	83	22.5092
((((((............)))))).)	chr17:4585642-4585921(-)$1	1	136	162	23.3115
(((((............)))))((..	chr7:151891173-151891451(-)$1	1	115	141	21.8408
((.((............))..)))))	chr12:69759302-69759614(+)$1	1	283	309	20.7954
..(((((...........)))))..)	chr7:102952232-102952446(+)$1	1	132	158	22.6278
(((((.............))))))..	chr12:50479354-50479622(+)$1	1	189	215	22.3839
(((((((...........)))))..)	chr12:6977831-6978144(+)$1	1	262	288	22.6270
((((.(((............)))..)	chr22:20907325-20907597(+)$1	1	184	210	19.3502
(((...............))))).))	chr6:31730662-31730927(+)$1	1	237	263	17.7135

#PSSM
f : 0.23	e : 0.14	[ : 0.12	g : 0.12	d : 0.10	! : 0.09	= : 0.03	# : 0.03	b : 0.01	" : 0.01	D : 0.01	$ : 0.01	h : 0.01	
f : 0.23	e : 0.20	d : 0.16	g : 0.12	a : 0.07	! : 0.05	= : 0.03	# : 0.03	" : 0.01	D : 0.01	c : 0.01	h : 0.01	
e : 0.25	f : 0.21	d : 0.10	g : 0.10	! : 0.09	[ : 0.09	c : 0.05	= : 0.03	y : 0.01	h : 0.01	
e : 0.23	f : 0.21	d : 0.12	g : 0.10	b : 0.09	! : 0.07	c : 0.05	= : 0.03	y : 0.01	h : 0.01	x : 0.01	
e : 0.21	f : 0.18	d : 0.10	b : 0.10	g : 0.10	w : 0.07	c : 0.05	= : 0.03	a : 0.03	y : 0.01	h : 0.01	[ : 0.01	x : 0.01	
v : 0.25	e : 0.12	u : 0.12	w : 0.09	g : 0.07	x : 0.05	d : 0.05	f : 0.05	c : 0.03	y : 0.03	= : 0.03	t : 0.03	b : 0.01	
u : 0.27	v : 0.25	w : 0.09	e : 0.07	t : 0.07	g : 0.07	x : 0.05	c : 0.03	y : 0.03	d : 0.01	= : 0.01	
t : 0.27	u : 0.27	v : 0.25	w : 0.09	x : 0.05	y : 0.03	c : 0.01	
u : 0.29	t : 0.27	v : 0.25	w : 0.09	x : 0.05	y : 0.03	
u : 0.29	t : 0.27	v : 0.25	w : 0.09	x : 0.05	y : 0.03	
u : 0.29	t : 0.27	v : 0.25	w : 0.09	x : 0.05	y : 0.03	
u : 0.29	t : 0.27	v : 0.25	w : 0.09	x : 0.05	y : 0.03	
u : 0.29	t : 0.27	v : 0.25	w : 0.09	x : 0.05	y : 0.03	
u : 0.29	t : 0.27	v : 0.25	w : 0.09	x : 0.05	y : 0.03	
u : 0.29	t : 0.27	v : 0.25	w : 0.09	x : 0.05	y : 0.03	
u : 0.29	t : 0.27	v : 0.25	w : 0.09	x : 0.05	y : 0.03	
u : 0.29	v : 0.25	t : 0.23	w : 0.09	x : 0.05	y : 0.03	a : 0.01	b : 0.01	
v : 0.25	t : 0.20	u : 0.16	w : 0.09	x : 0.05	b : 0.05	e : 0.05	y : 0.03	f : 0.03	c : 0.01	2 : 0.01	a : 0.01	
e : 0.23	f : 0.20	d : 0.12	g : 0.09	c : 0.07	b : 0.07	x : 0.03	= : 0.03	2 : 0.03	] : 0.01	y : 0.01	h : 0.01	w : 0.01	u : 0.01	
e : 0.25	f : 0.20	d : 0.14	g : 0.09	c : 0.07	2 : 0.05	x : 0.03	b : 0.03	= : 0.03	a : 0.01	y : 0.01	h : 0.01	u : 0.01	
e : 0.25	f : 0.23	d : 0.16	g : 0.12	c : 0.07	2 : 0.05	= : 0.03	] : 0.01	y : 0.01	h : 0.01	
e : 0.27	f : 0.23	d : 0.18	g : 0.12	] : 0.03	b : 0.03	c : 0.03	= : 0.03	2 : 0.01	h : 0.01	
f : 0.23	e : 0.21	g : 0.12	b : 0.09	d : 0.07	2 : 0.05	c : 0.03	= : 0.03	3 : 0.03	] : 0.03	a : 0.01	8 : 0.01	h : 0.01	
f : 0.20	2 : 0.18	g : 0.12	] : 0.10	d : 0.07	3 : 0.05	b : 0.05	c : 0.03	= : 0.03	e : 0.03	8 : 0.01	6 : 0.01	: : 0.01	a : 0.01	h : 0.01	
2 : 0.14	] : 0.12	g : 0.12	d : 0.09	: : 0.07	3 : 0.07	f : 0.05	b : 0.05	c : 0.05	a : 0.03	= : 0.03	e : 0.03	8 : 0.01	4 : 0.01	6 : 0.01	h : 0.01	! : 0.01	
c : 0.14	b : 0.12	f : 0.10	d : 0.10	e : 0.09	: : 0.07	g : 0.05	2 : 0.03	3 : 0.03	a : 0.03	= : 0.03	E : 0.01	] : 0.01	8 : 0.01	4 : 0.01	6 : 0.01	h : 0.01	C : 0.01	! : 0.01	

#score	1206.7232616891997
#seq	55
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_CDS_m2_run1.txt

#BEAR
gggg[attttttttttta]gggggg	chr2:220099609-220099854(+)$1	245	106	131	23.4531
c[ddddtttttttttttddddccc3	chr1:245025660-245025878(-)$1	218	94	119	22.0895
bb[ddddtttttttttttdddd]bb	chr17:78311274-78311554(+)$1	280	117	142	21.2564
[bbcccuuuuuuuuuuuuccc]bbe	chr2:128186119-128186362(+)$1	243	119	144	23.2890
dd[cccuuuuuuuuuuuucccdddd	chr14:23792107-23792319(+)$1	212	2	27	23.4995
cccyyyyyyyyyyyyyyyycccddd	chr9:134307988-134308266(+)$1	278	100	125	20.8477
cc[cccvvvvvvvvvvvvvccc]cc	chr14:31609002-31609253(-)$1	251	132	157	23.9762
:eeeeewwwwwwwwwwwwwweeeee	chr15:40477345-40477693(+)$1	348	34	59	21.6589
gggggguuuuuuuuuuuuggggggg	chr2:27820889-27821216(+)$1	327	151	176	24.3569
$$ddddvvvvvvvvvvvvvdddd88	chr3:9489437-9489706(+)$1	269	233	258	22.3224
[eeeeeuuuuuuuuuuuueeeee33	chr2:198266036-198266247(-)$1	211	168	193	24.3751
ffffffvvvvvvvvvvvvvffffff	chr19:1013183-1013436(-)$1	253	4	29	22.9928
feeeeewwwwwwwwwwwwwweeeee	chr16:2812949-2813209(+)$1	260	89	114	22.5538
d[eeeeettttttttttteeeee]d	chr2:11337275-11337549(-)$1	274	116	141	22.6810
%%%cccuuuuuuuuuuuuccc4444	chr16:2811746-2811982(+)$1	236	92	117	22.3208
f[eeeeettttttttttteeeee]f	chr11:9463527-9463833(+)$1	306	263	288	22.8351
!!ddddvvvvvvvvvvvvvdddd22	chr17:38185904-38186155(-)$1	251	136	161	23.4680
ggggwwwwwwwwwwwwwwggggggg	chr14:24607307-24607556(+)$1	249	24	49	22.3785
gggggguuuuuuuuuuuuggggggg	chr12:56568334-56568651(-)$1	317	173	198	24.3569
deeeeeattttttttttta]eeeee	chr3:184042644-184042909(+)$1	265	158	183	23.2291
gggggggtttttttttttggggggg	chr17:78261949-78262238(+)$1	289	128	153	22.9414
d[eeeeettttttttttteeeeedd	chr5:74109564-74109836(-)$1	272	181	206	22.4518
e[a[ccctttttttttttccc]aee	chr13:99030017-99030275(+)$1	258	184	209	22.9460
fffyyyyyyyyyyyyyyyyffffff	chr2:74399606-74399969(-)$1	363	103	128	20.6205
ffffffvvvvvvvvvvvvvffffff	chr8:117859750-117860031(-)$1	281	171	196	22.9928
&eeeeettttttttttteeeeeccc	chr14:39648279-39648530(+)$1	251	34	59	21.8565
%cccwwwwwwwwwwwwwwccc4444	chr12:432665-432978(-)$1	313	157	182	21.5763
#eeeeeyyyyyyyyyyyyyyyyeee	chr14:73577561-73577869(+)$1	308	113	138	21.2403
=====vvvvvvvvvvvvv=======	chr2:198267179-198267395(-)$1	216	138	163	24.1580
fffffftttttttttttffffff33	chr2:63091966-63092200(+)$1	234	175	200	21.7704
gggggggtttttttttttggggggg	chr12:69651411-69651679(+)$1	268	36	61	22.9414
gggggggtttttttttttggggggg	chr19:49604614-49604829(+)$1	215	17	42	22.9414
eeeyyyyyyyyyyyyyyyyeeeee]	chr19:57325174-57325401(-)$1	227	90	115	21.1029
[eeeeeuuuuuuuuuuuueeeeedd	chr2:61412553-61412784(+)$1	231	63	88	23.9342
eeeeeyyyyyyyyyyyyyyyyeeee	chr10:120803494-120803751(-)$1	257	199	224	21.2690
iiiiiiuuuuuuuuuuuuiiiiiii	chr1:70705032-70705252(+)$1	220	75	100	24.4138
======uuuuuuuuuuuu=======	chr19:1206719-1207050(+)$1	331	90	115	24.8429
[eeeeevvvvvvvvvvvvveeeeec	chr2:102448166-102448404(+)$1	238	156	181	24.0762
===[bbvvvvvvvvvvvvvbb]===	chr1:186321018-186321299(-)$1	281	221	246	23.5465
fff!!bbtttttttttttbb]ffff	chr19:34685346-34685641(+)$1	295	142	167	21.5507
###cccuuuuuuuuuuuuccchhhh	chr19:13051532-13051752(+)$1	220	124	149	23.5328
gggggguuuuuuuuuuuuggggggg	chr19:15784237-15784507(+)$1	270	177	202	24.3569
ee[cccwwwwwwwwwwwwwwcccee	chr12:116675176-116675498(-)$1	322	38	63	22.5056
gggggguuuuuuuuuuuuggggggg	chr16:70711599-70711852(-)$1	253	192	217	24.3569
d[ddddvvvvvvvvvvvvvdddd22	chr6:7579490-7579766(+)$1	276	211	236	23.1050
cc[cccvvvvvvvvvvvvvccc22c	chr1:15956743-15957148(+)$1	405	262	287	23.7377
%%cccvvvvvvvvvvvvvccc4444	chr2:153535767-153536018(-)$1	251	29	54	22.3723
gggggguuuuuuuuuuuuggggggg	chr6:32945166-32945430(+)$1	264	156	181	24.3569
"bb!!auuuuuuuuuuuua22bb44	chr7:73019989-73020198(-)$1	209	53	78	22.7981
!!dddduuuuuuuuuuuudddd]dd	chr20:57275973-57276257(+)$1	284	14	39	23.6386
d[ddddvvvvvvvvvvvvvdddd]d	chr2:242187379-242187630(-)$1	251	145	170	23.3560
======uuuuuuuuuuuu=======	chr2:203164869-203165111(+)$1	242	134	159	24.8429
!!a[bbtttttttttttbb]a22a]	chr16:89350134-89350417(-)$1	283	117	142	21.6071
ggggwwwwwwwwwwwwwwggggggg	chr1:55643549-55643840(-)$1	291	208	233	22.3785
======uuuuuuuuuuuu=======	chr16:89871675-89871899(-)$1	224	88	113	24.8429
[eeeeeuuuuuuuuuuuueeeee]e	chr17:73664508-73664807(+)$1	299	236	261	24.2467
%ddddvvvvvvvvvvvvvdddd333	chr6:7569392-7569672(+)$1	280	173	198	22.5064
ccccccuuuuuuuuuuuuccc:FFF	chr9:71842866-71843101(+)$1	235	163	188	21.8272
f[dddduuuuuuuuuuuuddddfff	chr1:19481447-19481668(-)$1	221	60	85	23.4037
iiiiiiuuuuuuuuuuuuiiiiiii	chr1:11896990-11897305(+)$1	315	16	41	24.4138
[eeeeeuuuuuuuuuuuueeeeedd	chr10:7786075-7786297(+)$1	222	12	37	23.9342
bbddddvvvvvvvvvvvvvdddd]b	chr22:38016144-38016407(+)$1	263	180	205	22.6856
ffffffvvvvvvvvvvvvvffffff	chr17:65907737-65908025(+)$1	288	250	275	22.9928
eeee[avvvvvvvvvvvvva]eeee	chr3:171406419-171406722(-)$1	303	176	201	23.7707
hhhhhhuuuuuuuuuuuuhhhhhhh	chr5:32403139-32403458(-)$1	319	289	314	21.6317
!!bbbbwwwwwwwwwwwwwwbb]bb	chr16:89347810-89348084(-)$1	274	122	147	20.9653
!!cccwwwwwwwwwwwwwwccc22e	chr2:27606150-27606431(-)$1	281	179	204	22.8496
ffffffvvvvvvvvvvvvvffffff	chr1:19451033-19451284(-)$1	251	35	60	22.9928
bb!!bbwwwwwwwwwwwwwwbb22b	chr7:99621341-99621594(+)$1	253	87	112	20.7638
#eeeeeyyyyyyyyyyyyyyyyeee	chr14:73577483-73577761(+)$1	278	191	216	21.2403
[bb[bbvvvvvvvvvvvvvbb]bbc	chr1:245027038-245027262(-)$1	224	158	183	22.1694
!!ddddyyyyyyyyyyyyyyyyddd	chr11:2991030-2991249(-)$1	219	60	85	20.8840

#otherMatches

#Seq PSSM
UUCUCCAGCAAACUCAAGAAGAGGA	chr2:220099609-220099854(+)$1	245	106	131	23.4531
ACAGUGGUUUGUCUUGAUACUUGUA	chr1:245025660-245025878(-)$1	218	94	119	22.0895
UCCGCCAGGAACUUGGAAUGGCUGA	chr17:78311274-78311554(+)$1	280	117	142	21.2564
UCCCGCACAAUGAGUGCAGCGAGGU	chr2:128186119-128186362(+)$1	243	119	144	23.2890
cugagcuuaugggauagugcuggug	chr14:23792107-23792319(+)$1	212	2	27	23.4995
GUCUGAAAACAAAGGAAACGACCCC	chr9:134307988-134308266(+)$1	278	100	125	20.8477
CCAGGAUCCACAUAUAACCUCCAGG	chr14:31609002-31609253(-)$1	251	132	157	23.9762
AGAGGACUCCAAAAUCCAUUUCCUC	chr15:40477345-40477693(+)$1	348	34	59	21.6589
AUUUUCCAGCAUCUUUCCGAAAAUC	chr2:27820889-27821216(+)$1	327	151	176	24.3569
AAUACCCCAAAACCAAAAAGGUAAG	chr3:9489437-9489706(+)$1	269	233	258	22.3224
UCAUUCUUUAGUCAACUUGAAUGCA	chr2:198266036-198266247(-)$1	211	168	193	24.3751
CAGUCCCUUCCCAUUAGCAGGACUG	chr19:1013183-1013436(-)$1	253	4	29	22.9928
GUUCAUCUCCUCAUCCUAAAGUGAA	chr16:2812949-2813209(+)$1	260	89	114	22.5538
GACAUUGGACAGUAAAGACAGUGAC	chr2:11337275-11337549(-)$1	274	116	141	22.6810
CCCCAGAAAGUCCUAAACCUGCUCC	chr16:2811746-2811982(+)$1	236	92	117	22.3208
Guuuaaaauuuuauaucguuuaauu	chr11:9463527-9463833(+)$1	306	263	288	22.8351
UGUCACAAACAUCCUCAAGGUGAGU	chr17:38185904-38186155(-)$1	251	136	161	23.4680
AGCGCUGCCCCACUUCCCUGCUCUU	chr14:24607307-24607556(+)$1	249	24	49	22.3785
GCCUGCCGCCGAAACCUAGCGGGUG	chr12:56568334-56568651(-)$1	317	173	198	24.3569
UGUGGUCAAACUGCUUAAGAACCAU	chr3:184042644-184042909(+)$1	265	158	183	23.2291
GUUGCCUGAGUCAAAAGGAGGCAGC	chr17:78261949-78262238(+)$1	289	128	153	22.9414
CUAAGUUAAAAAAUAAUAAACUUGU	chr5:74109564-74109836(-)$1	272	181	206	22.4518
AUGUUCAAAAUAACACAGUGAUCUG	chr13:99030017-99030275(+)$1	258	184	209	22.9460
UCUAAAACAUUCAAACCAAAGAAGA	chr2:74399606-74399969(-)$1	363	103	128	20.6205
AAGCUGCCGCAAAGUUCUACAGCUU	chr8:117859750-117860031(-)$1	281	171	196	22.9928
UUGAACAAAAACUUGAAGUUCAGGC	chr14:39648279-39648530(+)$1	251	34	59	21.8565
UGUCUCUACCAUCCAACUGAUCUGU	chr12:432665-432978(-)$1	313	157	182	21.5763
AGCCUUGUCUGAAACCUACUCUGAG	chr14:73577561-73577869(+)$1	308	113	138	21.2403
cuuuuuuuuuuuuucuuuaggagac	chr2:198267179-198267395(-)$1	216	138	163	24.1580
GUCUCUAUGUUACCUAAAGAGAUCC	chr2:63091966-63092200(+)$1	234	175	200	21.7704
AGUGGUUACAUUUCAGAAAACUAUU	chr12:69651411-69651679(+)$1	268	36	61	22.9414
CCAUGUGCCCCACAGAUACACAUGG	chr19:49604614-49604829(+)$1	215	17	42	22.9414
UAGAAGAACCAUACUAUGACUGCCA	chr19:57325174-57325401(-)$1	227	90	115	21.1029
GAACCUCUUCCCUUCUCCAGGUUCA	chr2:61412553-61412784(+)$1	231	63	88	23.9342
AGGAAAAUAAUGCCGCUCCAGUUCC	chr10:120803494-120803751(-)$1	257	199	224	21.2690
UCUUUUAAAUAUAGAUAAGAAAGAA	chr1:70705032-70705252(+)$1	220	75	100	24.4138
UUUUCUUUGUAAAAUUUUGGAGAAG	chr19:1206719-1207050(+)$1	331	90	115	24.8429
ACCUGCUCCGUAGGCCUUUGCAGGG	chr2:102448166-102448404(+)$1	238	156	181	24.0762
AAUGUAUAAAAGUUAAAUUUAGAUU	chr1:186321018-186321299(-)$1	281	221	246	23.5465
UGUUUGUGAGCCACCAAAACCACAG	chr19:34685346-34685641(+)$1	295	142	167	21.5507
UAUGCCUAUGAUAACUUUGGCGUGC	chr19:13051532-13051752(+)$1	220	124	149	23.5328
GUGGGCUCCUGGCUACUCGCCCGCA	chr19:15784237-15784507(+)$1	270	177	202	24.3569
GGACUGUGGACCCAUAAUUUCAGCC	chr12:116675176-116675498(-)$1	322	38	63	22.5056
GGGCAGGGAGGAGAUGGGCUGCCCU	chr16:70711599-70711852(-)$1	253	192	217	24.3569
UAAGCAAAAUCUAGACAAGUGCUAC	chr6:7579490-7579766(+)$1	276	211	236	23.1050
UGAAGGAACGCAAUCCACCCCUGGC	chr1:15956743-15957148(+)$1	405	262	287	23.7377
CAGCAACUCUUAUCUAAAUGCCCCU	chr2:153535767-153536018(-)$1	251	29	54	22.3723
UGUGGCAAUGGCACGAAAGCUACAG	chr6:32945166-32945430(+)$1	264	156	181	24.3569
UGCUCCUCCCUGCCUGCUGCUGCUG	chr7:73019989-73020198(-)$1	209	53	78	22.7981
CCGGCCAGAGUUUCCAGGGGCCUCU	chr20:57275973-57276257(+)$1	284	14	39	23.6386
AGCUCAGAGGACCUAAGAAUGAGGU	chr2:242187379-242187630(-)$1	251	145	170	23.3560
GUUCUAAAAAACGCAAAAUAGAACA	chr2:203164869-203165111(+)$1	242	134	159	24.8429
GACAGCAAGGAGAGGAGGCGGGACA	chr16:89350134-89350417(-)$1	283	117	142	21.6071
UUCAGACCUUagaacacaugaggac	chr1:55643549-55643840(-)$1	291	208	233	22.3785
UGUGUCUCCAGCCAUCCCGACAUGC	chr16:89871675-89871899(-)$1	224	88	113	24.8429
AUUUCAUUUGUCAGAUUUUGGAACU	chr17:73664508-73664807(+)$1	299	236	261	24.2467
UCUUGCAAGUAAGUCAUCCAAGUUC	chr6:7569392-7569672(+)$1	280	173	198	22.5064
GGUGAGCCAUUAAGACCACUCAGUU	chr9:71842866-71843101(+)$1	235	163	188	21.8272
AACAUGAAUUACUGCAAAUAUGUGU	chr1:19481447-19481668(-)$1	221	60	85	23.4037
CUGUGUUCGUUUGCCCAUGCGCAGU	chr1:11896990-11897305(+)$1	315	16	41	24.4138
CAAUGGAAAACUAAGCACCUAUUUU	chr10:7786075-7786297(+)$1	222	12	37	23.9342
GGAGGUGAAAAUCGCAGAGGCCUAC	chr22:38016144-38016407(+)$1	263	180	205	22.6856
GAGCCGUUAAAGUGUGAGUUGGUUU	chr17:65907737-65908025(+)$1	288	250	275	22.9928
UGGGACGACAAUGAGCACAGACUCA	chr3:171406419-171406722(-)$1	303	176	201	23.7707
uguuguuucuucuccauugcagcac	chr5:32403139-32403458(-)$1	319	289	314	21.6317
CCGCGGAAAAUAAGCUACACCCAGC	chr16:89347810-89348084(-)$1	274	122	147	20.9653
CAACCUCUCCAGAGCCAUUGGUAAG	chr2:27606150-27606431(-)$1	281	179	204	22.8496
UUUUCCUAAUUGUGGUCAUGGAAAA	chr1:19451033-19451284(-)$1	251	35	60	22.9928
GCUAGAGCAGUUUCUUUCCAUCCUG	chr7:99621341-99621594(+)$1	253	87	112	20.7638
AGCCUUGUCUGAAACCUACUCUGAG	chr14:73577483-73577761(+)$1	278	191	216	21.2403
AGCAGCAACAGCCCCAACAGCAGCG	chr1:245027038-245027262(-)$1	224	158	183	22.1694
UACCUAUGUUGCAUCUUUUUUUUAG	chr11:2991030-2991249(-)$1	219	60	85	20.8840

#DB
((((.(...........).))))))	chr2:220099609-220099854(+)$1	1	106	131	23.4531
(.((((...........))))))).	chr1:245025660-245025878(-)$1	1	94	119	22.0895
((.((((...........)))).))	chr17:78311274-78311554(+)$1	1	117	142	21.2564
.(((((............))).)))	chr2:128186119-128186362(+)$1	1	119	144	23.2890
((.(((............)))))))	chr14:23792107-23792319(+)$1	1	2	27	23.4995
(((................)))(((	chr9:134307988-134308266(+)$1	1	100	125	20.8477
((.(((.............))).))	chr14:31609002-31609253(-)$1	1	132	157	23.9762
.(((((..............)))))	chr15:40477345-40477693(+)$1	1	34	59	21.6589
((((((............)))))))	chr2:27820889-27821216(+)$1	1	151	176	24.3569
..((((.............))))..	chr3:9489437-9489706(+)$1	1	233	258	22.3224
.(((((............)))))..	chr2:198266036-198266247(-)$1	1	168	193	24.3751
((((((.............))))))	chr19:1013183-1013436(-)$1	1	4	29	22.9928
((((((..............)))))	chr16:2812949-2813209(+)$1	1	89	114	22.5538
(.(((((...........))))).)	chr2:11337275-11337549(-)$1	1	116	141	22.6810
...(((............)))....	chr16:2811746-2811982(+)$1	1	92	117	22.3208
(.(((((...........))))).)	chr11:9463527-9463833(+)$1	1	263	288	22.8351
..((((.............))))..	chr17:38185904-38186155(-)$1	1	136	161	23.4680
((((..............)))))))	chr14:24607307-24607556(+)$1	1	24	49	22.3785
((((((............)))))))	chr12:56568334-56568651(-)$1	1	173	198	24.3569
)((((((...........).)))))	chr3:184042644-184042909(+)$1	1	158	183	23.2291
(((((((...........)))))))	chr17:78261949-78262238(+)$1	1	128	153	22.9414
(.(((((...........)))))))	chr5:74109564-74109836(-)$1	1	181	206	22.4518
(.(.(((...........))).)))	chr13:99030017-99030275(+)$1	1	184	209	22.9460
(((................))))))	chr2:74399606-74399969(-)$1	1	103	128	20.6205
((((((.............))))))	chr8:117859750-117860031(-)$1	1	171	196	22.9928
.(((((...........))))))))	chr14:39648279-39648530(+)$1	1	34	59	21.8565
.(((..............)))....	chr12:432665-432978(-)$1	1	157	182	21.5763
.(((((................)))	chr14:73577561-73577869(+)$1	1	113	138	21.2403
(((((.............)))))))	chr2:198267179-198267395(-)$1	1	138	163	24.1580
((((((...........))))))..	chr2:63091966-63092200(+)$1	1	175	200	21.7704
(((((((...........)))))))	chr12:69651411-69651679(+)$1	1	36	61	22.9414
(((((((...........)))))))	chr19:49604614-49604829(+)$1	1	17	42	22.9414
(((................))))).	chr19:57325174-57325401(-)$1	1	90	115	21.1029
.(((((............)))))))	chr2:61412553-61412784(+)$1	1	63	88	23.9342
(((((................))))	chr10:120803494-120803751(-)$1	1	199	224	21.2690
((((((............)))))))	chr1:70705032-70705252(+)$1	1	75	100	24.4138
((((((............)))))))	chr19:1206719-1207050(+)$1	1	90	115	24.8429
.(((((.............))))))	chr2:102448166-102448404(+)$1	1	156	181	24.0762
(((.((.............)).)))	chr1:186321018-186321299(-)$1	1	221	246	23.5465
(((..((...........)).))))	chr19:34685346-34685641(+)$1	1	142	167	21.5507
...(((............)))))))	chr19:13051532-13051752(+)$1	1	124	149	23.5328
((((((............)))))))	chr19:15784237-15784507(+)$1	1	177	202	24.3569
((.(((..............)))))	chr12:116675176-116675498(-)$1	1	38	63	22.5056
((((((............)))))))	chr16:70711599-70711852(-)$1	1	192	217	24.3569
(.((((.............))))..	chr6:7579490-7579766(+)$1	1	211	236	23.1050
((.(((.............)))..)	chr1:15956743-15957148(+)$1	1	262	287	23.7377
..(((.............)))....	chr2:153535767-153536018(-)$1	1	29	54	22.3723
((((((............)))))))	chr6:32945166-32945430(+)$1	1	156	181	24.3569
.((..(............)..))..	chr7:73019989-73020198(-)$1	1	53	78	22.7981
..((((............)))).))	chr20:57275973-57276257(+)$1	1	14	39	23.6386
(.((((.............)))).)	chr2:242187379-242187630(-)$1	1	145	170	23.3560
((((((............)))))))	chr2:203164869-203165111(+)$1	1	134	159	24.8429
..(.((...........)).)..).	chr16:89350134-89350417(-)$1	1	117	142	21.6071
((((..............)))))))	chr1:55643549-55643840(-)$1	1	208	233	22.3785
((((((............)))))))	chr16:89871675-89871899(-)$1	1	88	113	24.8429
.(((((............))))).)	chr17:73664508-73664807(+)$1	1	236	261	24.2467
.((((.............))))...	chr6:7569392-7569672(+)$1	1	173	198	22.5064
)))(((............))).)))	chr9:71842866-71843101(+)$1	1	163	188	21.8272
(.((((............)))))))	chr1:19481447-19481668(-)$1	1	60	85	23.4037
((((((............)))))))	chr1:11896990-11897305(+)$1	1	16	41	24.4138
.(((((............)))))))	chr10:7786075-7786297(+)$1	1	12	37	23.9342
((((((.............)))).)	chr22:38016144-38016407(+)$1	1	180	205	22.6856
((((((.............))))))	chr17:65907737-65908025(+)$1	1	250	275	22.9928
((((.(.............).))))	chr3:171406419-171406722(-)$1	1	176	201	23.7707
((((((............)))))))	chr5:32403139-32403458(-)$1	1	289	314	21.6317
..((((..............)).))	chr16:89347810-89348084(-)$1	1	122	147	20.9653
..(((..............)))..)	chr2:27606150-27606431(-)$1	1	179	204	22.8496
((((((.............))))))	chr1:19451033-19451284(-)$1	1	35	60	22.9928
((..((..............))..)	chr7:99621341-99621594(+)$1	1	87	112	20.7638
.(((((................)))	chr14:73577483-73577761(+)$1	1	191	216	21.2403
.((.((.............)).)))	chr1:245027038-245027262(-)$1	1	158	183	22.1694
..((((................)))	chr11:2991030-2991249(-)$1	1	60	85	20.8840

#PSSM
g : 0.15	f : 0.13	[ : 0.09	d : 0.08	! : 0.08	c : 0.06	e : 0.06	= : 0.06	% : 0.05	b : 0.04	# : 0.04	i : 0.02	: : 0.01	$ : 0.01	& : 0.01	" : 0.01	h : 0.01	
e : 0.20	g : 0.15	[ : 0.11	f : 0.09	b : 0.08	! : 0.08	c : 0.06	= : 0.06	d : 0.02	% : 0.02	i : 0.02	$ : 0.01	# : 0.01	h : 0.01	
e : 0.23	g : 0.15	d : 0.13	f : 0.09	[ : 0.06	c : 0.06	= : 0.06	b : 0.05	a : 0.02	i : 0.02	% : 0.01	# : 0.01	h : 0.01	! : 0.01	
e : 0.22	g : 0.15	d : 0.15	c : 0.15	f : 0.06	[ : 0.05	= : 0.05	y : 0.04	! : 0.04	i : 0.02	h : 0.01	b : 0.01	
e : 0.20	d : 0.15	c : 0.15	g : 0.11	f : 0.06	b : 0.06	= : 0.05	y : 0.04	w : 0.04	[ : 0.02	i : 0.02	! : 0.02	h : 0.01	
e : 0.19	d : 0.13	c : 0.12	g : 0.11	b : 0.08	f : 0.06	y : 0.05	w : 0.05	a : 0.04	v : 0.04	= : 0.04	i : 0.02	h : 0.01	
u : 0.31	v : 0.25	w : 0.12	y : 0.09	t : 0.06	e : 0.04	g : 0.04	d : 0.01	a : 0.01	c : 0.01	b : 0.01	
u : 0.31	v : 0.25	t : 0.20	w : 0.12	y : 0.09	
u : 0.31	v : 0.25	t : 0.20	w : 0.12	y : 0.09	
u : 0.31	v : 0.25	t : 0.20	w : 0.12	y : 0.09	
u : 0.31	v : 0.25	t : 0.20	w : 0.12	y : 0.09	
u : 0.31	v : 0.25	t : 0.20	w : 0.12	y : 0.09	
u : 0.31	v : 0.25	t : 0.20	w : 0.12	y : 0.09	
u : 0.31	v : 0.25	t : 0.20	w : 0.12	y : 0.09	
u : 0.31	v : 0.25	t : 0.20	w : 0.12	y : 0.09	
u : 0.31	v : 0.25	t : 0.20	w : 0.12	y : 0.09	
u : 0.31	v : 0.25	t : 0.20	w : 0.12	y : 0.09	
u : 0.31	v : 0.25	t : 0.13	w : 0.12	y : 0.09	a : 0.01	d : 0.01	e : 0.01	f : 0.01	b : 0.01	
v : 0.20	g : 0.13	c : 0.11	e : 0.11	y : 0.09	w : 0.08	d : 0.06	= : 0.05	a : 0.02	i : 0.02	b : 0.02	] : 0.01	f : 0.01	h : 0.01	
c : 0.16	g : 0.15	d : 0.13	e : 0.13	f : 0.08	w : 0.06	y : 0.05	= : 0.05	b : 0.04	] : 0.02	i : 0.02	2 : 0.01	a : 0.01	h : 0.01	
c : 0.18	e : 0.18	g : 0.15	d : 0.13	f : 0.08	y : 0.05	= : 0.05	b : 0.05	i : 0.02	] : 0.02	2 : 0.01	a : 0.01	h : 0.01	
e : 0.20	g : 0.15	d : 0.13	f : 0.09	c : 0.08	] : 0.05	= : 0.05	4 : 0.04	y : 0.04	b : 0.04	i : 0.02	h : 0.02	2 : 0.01	: : 0.01	
e : 0.22	g : 0.15	d : 0.11	f : 0.11	= : 0.06	] : 0.05	2 : 0.05	c : 0.04	b : 0.04	4 : 0.04	i : 0.02	h : 0.02	a : 0.01	3 : 0.01	F : 0.01	
g : 0.15	e : 0.15	d : 0.09	f : 0.09	] : 0.06	2 : 0.06	= : 0.06	b : 0.05	4 : 0.05	c : 0.04	3 : 0.04	i : 0.02	h : 0.02	8 : 0.01	a : 0.01	F : 0.01	
e : 0.16	g : 0.15	d : 0.12	f : 0.11	c : 0.06	= : 0.06	3 : 0.05	b : 0.05	4 : 0.05	2 : 0.02	] : 0.02	i : 0.02	h : 0.02	8 : 0.01	F : 0.01	

#score	1646.1837462764352
#seq	72
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_CDS_m1_run1.txt

#BEAR
::dddd!!dddd[cccooooooccc333dddd22dddddd	chr16:28841029-28841298(+)$1	269	39	79	10.1240
ppccccccbb[eeeeeooooooeeeee]bb]ccciiiiii	chr22:50694421-50694668(-)$1	247	42	82	13.0724
""dddd[abb[dddd[ammmma]dddd]bb]a]dddd333	chr16:31196174-31196428(+)$1	254	98	138	15.4713
##dddd[ccc!!cccmmmmccc]cccdddd333ddddccc	chr5:179048268-179048515(-)$1	247	193	233	12.7712
f[a[ffffff!!eeeeennnnneeeee22ffffff]a333	chr8:110346553-110346808(+)$1	255	132	172	10.6643
[ccc[bb[bb!!ccc[==========!!bb[iiiiiiiii	chr19:49607697-49608001(+)$1	304	31	71	11.2455
!eeeee!!iiiiiiiiimmmmiiiiiiiii4444eeeee2	chr6:26027258-26027485(-)$1	227	106	146	13.0905
""ffffff####a[bbammmma]bb]a333ffffff333d	chr16:31201578-31201815(+)$1	237	100	140	10.7209
!dddd"""ccc[eeeeennnnneeeee]cccddddddddd	chr17:76200657-76200965(+)$1	308	191	231	11.7386
seeeee]===========]a4444ccc]bb]a]iiiiiii	chr6:26027329-26027553(-)$1	224	76	116	13.2902
iiiiiii[bb[ccc[ddddllldddd]cccbb]iiiiiii	chr7:26233101-26233345(-)$1	244	22	62	11.0696
bccc####bb[eeeeeooooooeeeee]bbccc]bb22bb	chr22:50694468-50694722(-)$1	254	96	136	12.4637
iidddd==========vvvvvvvvvvvvv==========6	chr7:26237204-26237463(-)$1	259	143	183	10.3279
eeee####dddd[ddddmmmmdddd]dddd333eeeee]a	chr9:19379271-19379514(-)$1	243	22	62	10.9141
!!dddd!!hhhhhhhhoooooohhhhhhhh22ddddhhhh	chr17:56082236-56082587(-)$1	351	161	201	10.9166
seeeee]===========]a4444ccc]bb]a]iiiiiii	chr6:26027307-26027529(-)$1	222	52	92	13.2902
$$$$bb[bb[cccbbcccooooooccc]bb22ccc]bb]b	chr9:19379314-19379566(-)$1	252	29	69	10.4357
###ffffffxxxxxxxxxxxxxxxffffff333dddd333	chr19:805384-805661(+)$1	277	171	211	10.5584
aeeeee"""bb[bbcccmmmmccc]bb]bb22eeeee444	chr17:76116991-76117214(-)$1	223	75	115	12.4674
eeea[eeeee!!cccmmmmccc]eeeee]a]eeeeeccc[	chr7:26237347-26237593(-)$1	246	12	52	9.9563
dd[eeeee[ccccccnnnnnccc]ccc]eeeeedddd]a2	chr17:46051772-46052129(+)$1	357	277	317	10.0945
iiiiii[ccc[eeeeeooooooeeeeeccc]iiiiiiiii	chr6:86324670-86324932(-)$1	262	12	52	14.1053
""eeeee[bb[ccc"""bb[ccc"""ddddllldddd333	chr16:31196228-31196553(+)$1	325	74	114	10.4146

#otherMatches

#Seq PSSM
UAAAUACUUCCAUGCCUGAACUGGUGAUUGGACUUGUUGA	chr16:28841029-28841298(+)$1	269	39	79	10.1240
CCUGGACUUCGGCCUGGCCAGGCAGGCAGACAGUGAGAUG	chr22:50694421-50694668(-)$1	247	42	82	13.0724
AGAUCAAUCCUCCAUGAguaguggugguggcagugguggc	chr16:31196174-31196428(+)$1	254	98	138	15.4713
UGUUGAACUUGAAUCAGAAGAUGAAGUCAAAUUGGCCCUG	chr5:179048268-179048515(-)$1	247	193	233	12.7712
UCGCCCGCGGUGAUGGUGGUGAGCUAUGCCCGUGGUCCUC	chr8:110346553-110346808(+)$1	255	132	172	10.6643
GGAGAGGGUUGGUCUGGCUGUCAGUUGCCUGGCUGUCUGU	chr19:49607697-49608001(+)$1	304	31	71	11.2455
CAUUCGGCGCCUUGCUAGGCGUGGUGGGGUUAAGCGAAUU	chr6:26027258-26027485(-)$1	227	106	146	13.0905
ggaggACAGCAGCGAGCUGGUGACUGGAAGUGUCCUAAUC	chr16:31201578-31201815(+)$1	237	100	140	10.7209
GAGGGCCGGUGGGCUUUAGGAGGAAGUGCAUCCCUGACCC	chr17:76200657-76200965(+)$1	308	191	231	11.7386
UCUGGUCGCGGCAAAGGCGGUAAAGGUUUGGGUAAGGGAG	chr6:26027329-26027553(-)$1	224	76	116	13.2902
UUAUAAUAGGUGGCAAUUUUGGAGGUAGCCCCGGUUAUGG	chr7:26233101-26233345(-)$1	244	22	62	11.0696
CCUGGACUUCGGCCUGGCCAGGCAGGCAGACAGUGAGAUG	chr22:50694468-50694722(-)$1	254	96	136	12.4637
UGGUGGCUUAAGCUUUGAAACCACAGAAGAAAGUUUGAGG	chr7:26237204-26237463(-)$1	259	143	183	10.3279
AAUGGAAGGUAAAAGUUGACAAAUUGUUGCAGGUAUUUAA	chr9:19379271-19379514(-)$1	243	22	62	10.9141
UGCUUUUCAUGUGUCUUUCUGUAGACAUAUCUGAAGAGAU	chr17:56082236-56082587(-)$1	351	161	201	10.9166
UCUGGUCGCGGCAAAGGCGGUAAAGGUUUGGGUAAGGGAG	chr6:26027307-26027529(-)$1	222	52	92	13.2902
AGAAGCGUAUGGCCACAGAAGUUGCUGCUGACGCUCUGGG	chr9:19379314-19379566(-)$1	252	29	69	10.4357
UCCUCAAGCUGCAGGUAUUCAAACGCUUGGUCUUGGUUCC	chr19:805384-805661(+)$1	277	171	211	10.5584
AGCCGCAUGACUCCCCGGUACUGGAGGUGUACGUGGCCAU	chr17:76116991-76117214(-)$1	223	75	115	12.4674
UGUAGAUCAGCUGAGGCAAUUUUUUGGUGUAACACAACUA	chr7:26237347-26237593(-)$1	246	12	52	9.9563
AGCAGGUGUGUGUGGGUCCUCCACCACUCACCUCUUGGUU	chr17:46051772-46052129(+)$1	357	277	317	10.0945
AACUAUCGUGGUGGAUAUGAAGAUCCAUACUAUGGUUAUG	chr6:86324670-86324932(-)$1	262	12	52	14.1053
cagugguggcgguuauggcaaucaagaccagaguggugga	chr16:31196228-31196553(+)$1	325	74	114	10.4146

#DB
..((((..((((.(((......)))...))))..))))((	chr16:28841029-28841298(+)$1	1	39	79	10.1240
..)))(((((.(((((......))))).)).)))((((((	chr22:50694421-50694668(-)$1	1	42	82	13.0724
..((((.(((.((((.(....).)))).)).).))))...	chr16:31196174-31196428(+)$1	1	98	138	15.4713
..((((.(((..(((....))).)))))))...))))(((	chr5:179048268-179048515(-)$1	1	193	233	12.7712
(.(.((((((..(((((.....)))))..)))))).)...	chr8:110346553-110346808(+)$1	1	132	172	10.6643
.(((.((.((..(((.((((((((((..((.(((((((((	chr19:49607697-49608001(+)$1	1	31	71	11.2455
.(((((..(((((((((....)))))))))....))))).	chr6:26027258-26027485(-)$1	1	106	146	13.0905
..((((((....(.(((....).)).)...))))))...)	chr16:31201578-31201815(+)$1	1	100	140	10.7209
.((((...(((.(((((.....))))).))))))))))))	chr17:76200657-76200965(+)$1	1	191	231	11.7386
.))))).))))))))))).)....))).)).).)))))))	chr6:26027329-26027553(-)$1	1	76	116	13.2902
(((((((.((.(((.((((...)))).))))).)))))))	chr7:26233101-26233345(-)$1	1	22	62	11.0696
((((....((.(((((......))))).))))).))..))	chr22:50694468-50694722(-)$1	1	96	136	12.4637
((((((((((((((((.............)))))))))).	chr7:26237204-26237463(-)$1	1	143	183	10.3279
((((....((((.((((....)))).))))...))))).)	chr9:19379271-19379514(-)$1	1	22	62	10.9141
..((((..((((((((......))))))))..))))))))	chr17:56082236-56082587(-)$1	1	161	201	10.9166
.))))).))))))))))).)....))).)).).)))))))	chr6:26027307-26027529(-)$1	1	52	92	13.2902
....((.((.((((((((......))).))..))).)).)	chr9:19379314-19379566(-)$1	1	29	69	10.4357
...((((((...............))))))...))))...	chr19:805384-805661(+)$1	1	171	211	10.5584
((((((...((.(((((....))).)).))..)))))...	chr17:76116991-76117214(-)$1	1	75	115	12.4674
((((.(((((..(((....))).))))).).)))))(((.	chr7:26237347-26237593(-)$1	1	12	52	9.9563
((.(((((.((((((.....))).))).))))))))).).	chr17:46051772-46052129(+)$1	1	277	317	10.0945
((((((.(((.(((((......)))))))).)))))))))	chr6:86324670-86324932(-)$1	1	12	52	14.1053
..(((((.((.(((...((.(((...((((...))))...	chr16:31196228-31196553(+)$1	1	74	114	10.4146

#PSSM
" : 0.13	! : 0.13	i : 0.13	# : 0.08	s : 0.08	e : 0.08	: : 0.04	p : 0.04	f : 0.04	[ : 0.04	b : 0.04	$ : 0.04	a : 0.04	d : 0.04	
e : 0.26	" : 0.13	i : 0.13	# : 0.08	c : 0.08	d : 0.08	: : 0.04	p : 0.04	[ : 0.04	! : 0.04	$ : 0.04	
e : 0.30	d : 0.26	c : 0.13	i : 0.08	a : 0.04	f : 0.04	$ : 0.04	# : 0.04	[ : 0.04	
e : 0.30	d : 0.26	c : 0.13	f : 0.08	i : 0.08	[ : 0.04	$ : 0.04	a : 0.04	
d : 0.26	e : 0.26	f : 0.13	[ : 0.08	i : 0.08	# : 0.08	c : 0.04	b : 0.04	
e : 0.30	d : 0.21	f : 0.13	b : 0.08	i : 0.08	# : 0.08	c : 0.04	" : 0.04	
[ : 0.17	! : 0.13	f : 0.13	e : 0.13	" : 0.08	] : 0.08	# : 0.08	c : 0.04	b : 0.04	i : 0.04	= : 0.04	
! : 0.13	c : 0.13	f : 0.13	[ : 0.13	= : 0.13	" : 0.08	# : 0.08	e : 0.08	a : 0.04	b : 0.04	
b : 0.30	c : 0.13	= : 0.13	d : 0.08	f : 0.08	i : 0.04	# : 0.04	h : 0.04	" : 0.04	e : 0.04	[ : 0.04	
b : 0.30	c : 0.17	= : 0.13	d : 0.08	f : 0.04	i : 0.04	# : 0.04	h : 0.04	[ : 0.04	x : 0.04	e : 0.04	
[ : 0.26	! : 0.17	c : 0.13	= : 0.13	d : 0.08	i : 0.04	# : 0.04	h : 0.04	x : 0.04	b : 0.04	
! : 0.17	c : 0.17	d : 0.13	e : 0.13	= : 0.13	[ : 0.08	i : 0.04	# : 0.04	h : 0.04	x : 0.04	
c : 0.30	e : 0.21	= : 0.13	[ : 0.08	d : 0.04	i : 0.04	a : 0.04	h : 0.04	x : 0.04	b : 0.04	
c : 0.30	e : 0.21	= : 0.13	d : 0.08	b : 0.08	i : 0.04	[ : 0.04	h : 0.04	x : 0.04	
c : 0.26	e : 0.21	= : 0.13	d : 0.08	b : 0.08	i : 0.04	[ : 0.04	h : 0.04	x : 0.04	" : 0.04	
e : 0.21	c : 0.13	= : 0.13	[ : 0.08	m : 0.08	d : 0.08	i : 0.04	b : 0.04	h : 0.04	x : 0.04	n : 0.04	" : 0.04	
o : 0.21	= : 0.13	a : 0.08	m : 0.08	e : 0.08	d : 0.08	c : 0.08	i : 0.04	v : 0.04	x : 0.04	n : 0.04	" : 0.04	
m : 0.30	o : 0.21	n : 0.13	= : 0.13	d : 0.04	v : 0.04	c : 0.04	x : 0.04	b : 0.04	
m : 0.30	o : 0.26	n : 0.13	] : 0.08	= : 0.04	d : 0.04	v : 0.04	x : 0.04	b : 0.04	
o : 0.26	m : 0.21	n : 0.13	c : 0.08	a : 0.08	= : 0.04	l : 0.04	v : 0.04	x : 0.04	[ : 0.04	
o : 0.26	m : 0.21	c : 0.17	n : 0.08	4 : 0.08	= : 0.04	l : 0.04	v : 0.04	x : 0.04	
o : 0.26	c : 0.21	a : 0.08	n : 0.08	4 : 0.08	= : 0.04	i : 0.04	l : 0.04	v : 0.04	d : 0.04	x : 0.04	
e : 0.21	c : 0.17	] : 0.17	4 : 0.08	d : 0.08	= : 0.04	i : 0.04	v : 0.04	h : 0.04	o : 0.04	x : 0.04	
e : 0.26	c : 0.13	d : 0.13	4 : 0.08	= : 0.04	i : 0.04	b : 0.04	v : 0.04	h : 0.04	o : 0.04	x : 0.04	] : 0.04	" : 0.04	
c : 0.26	e : 0.26	d : 0.13	= : 0.04	i : 0.04	b : 0.04	v : 0.04	h : 0.04	f : 0.04	] : 0.04	" : 0.04	
e : 0.26	c : 0.21	d : 0.08	] : 0.08	3 : 0.04	= : 0.04	i : 0.04	v : 0.04	h : 0.04	f : 0.04	b : 0.04	" : 0.04	
e : 0.26	d : 0.17	c : 0.17	3 : 0.04	! : 0.04	i : 0.04	a : 0.04	] : 0.04	v : 0.04	h : 0.04	f : 0.04	b : 0.04	
] : 0.39	d : 0.13	3 : 0.08	c : 0.08	2 : 0.04	! : 0.04	i : 0.04	v : 0.04	h : 0.04	f : 0.04	e : 0.04	
b : 0.34	d : 0.17	c : 0.13	2 : 0.04	i : 0.04	3 : 0.04	v : 0.04	h : 0.04	f : 0.04	] : 0.04	e : 0.04	
b : 0.34	d : 0.17	c : 0.13	f : 0.08	i : 0.04	3 : 0.04	= : 0.04	h : 0.04	a : 0.04	e : 0.04	
] : 0.26	3 : 0.13	2 : 0.13	f : 0.08	c : 0.08	d : 0.04	[ : 0.04	4 : 0.04	b : 0.04	= : 0.04	e : 0.04	l : 0.04	
a : 0.13	3 : 0.13	2 : 0.13	d : 0.08	c : 0.08	f : 0.08	i : 0.08	e : 0.08	4 : 0.04	b : 0.04	= : 0.04	l : 0.04	
] : 0.17	c : 0.13	3 : 0.13	e : 0.13	f : 0.08	i : 0.08	d : 0.08	2 : 0.04	4 : 0.04	= : 0.04	l : 0.04	
d : 0.30	i : 0.21	e : 0.13	c : 0.08	f : 0.08	2 : 0.04	4 : 0.04	] : 0.04	= : 0.04	
d : 0.34	i : 0.26	e : 0.17	f : 0.08	b : 0.04	= : 0.04	c : 0.04	
d : 0.34	i : 0.26	e : 0.17	] : 0.08	f : 0.04	b : 0.04	= : 0.04	
d : 0.30	i : 0.26	e : 0.13	a : 0.04	3 : 0.04	2 : 0.04	= : 0.04	h : 0.04	b : 0.04	c : 0.04	
i : 0.26	3 : 0.21	d : 0.08	c : 0.08	e : 0.08	2 : 0.04	= : 0.04	h : 0.04	b : 0.04	4 : 0.04	] : 0.04	
i : 0.26	3 : 0.21	d : 0.08	c : 0.08	] : 0.08	e : 0.04	b : 0.04	= : 0.04	h : 0.04	4 : 0.04	a : 0.04	
i : 0.26	3 : 0.17	d : 0.13	2 : 0.08	b : 0.08	c : 0.04	6 : 0.04	a : 0.04	h : 0.04	4 : 0.04	[ : 0.04	

#score	269.2043074757434
#seq	23
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_UTR_m1_run2.txt

#BEAR
ddeeeee####ddddoooooodddd4444eeeee]d	chr19:56614575-56614797(-)$1	222	178	214	11.4382
cc[ddddbbddddcccnnnnnccc333dddd333bb	chr2:131102992-131103266(+)$1	274	37	73	14.4192
gggggggeeeee[bbannnnna]bb]eeeee]gggg	chr20:62368735-62369003(+)$1	268	86	122	13.1016
fffff[ccc[a[acccnnnnnccc]a]a]ccc]fff	chr1:1326143-1326415(-)$1	272	115	151	14.6604
ccccc"""eeeee[bbnnnnnbbeeeeeccc]ccc:	chr6:31725785-31726040(+)$1	255	172	208	12.4929
dd!!dddd[a!!cccccclllccc22ccc22a]ddd	chr1:110586098-110586373(+)$1	275	193	229	12.0023
[bb!!dddd"""cccooooooccc4444ddddbb]f	chr4:2833491-2833759(+)$1	268	36	72	12.4878
ccbb[ddddccc!!bbnnnnnbb22ccc]dddd22b	chr5:172341547-172341833(+)$1	286	189	225	12.3965
ccc"""ggggggg[bboooooobb]ggggggg8888	chr19:45406139-45406352(+)$1	213	98	134	10.9593
eee[ccc"""ccc[bbnnnnnbbccc22ccc]eeee	chr3:8669354-8669625(-)$1	271	187	223	13.8472
hhh!!dddd[bb[cccnnnnnccc]bbdddd22hhh	chr3:47889959-47890224(+)$1	265	159	195	12.8339
eeeebbeeeee[ddddnnnnndddd]eeeee22bb]	chr17:78195192-78195461(+)$1	269	151	187	11.5288
ggg!!eeeee"""cccnnnnnccc22eeeee22ggg	chr12:56554877-56555087(+)$1	210	25	61	15.8014
!ffffff"""a[cccooooooccc]a333ffffff2	chr13:111935318-111935609(+)$1	291	90	126	12.8366
ee!!eeeee[a"""cccmmmmccc22a]eeeee]ee	chr17:76817032-76817335(-)$1	303	72	108	11.9848
cc####bb####cccooooooccc333bb22ccc22	chr5:132161804-132162030(-)$1	226	168	204	12.8765
cc!!ccc[ccc[ddddoooooodddd]cccccc]cc	chr20:62339732-62340010(+)$1	278	38	74	12.2023
dccc[dddd[ccccccnnnnnccc4444ccc]dddd	chr11:721928-722197(+)$1	269	77	113	14.9358
===========[ccc[bblllbb]ccc=========	chr16:89627208-89627471(+)$1	263	14	50	11.9334
ggggggg"""bb[cccnnnnnccc]bb]ggggggg2	chr19:2272582-2272848(+)$1	266	199	235	14.3895
eeee[a[ffffff[bbnnnnnbbffffff]aeeeee	chr16:3727529-3727793(-)$1	264	224	260	11.6442
ggggggg[dddd!!bbnnnnnbb22ddddggggggg	chr2:85828504-85828756(-)$1	252	150	186	13.6962
FF==============mmmm==============:d	chr15:44084981-44085259(+)$1	278	50	86	10.4683
""ccc[ffffff[cccnnnnnccc]ffffffccc==	chr15:52553222-52553487(-)$1	265	48	84	13.5636
dccc[===========nnnnn===========]ccc	chr11:722521-722781(+)$1	260	209	245	15.3397
cc!!eeeee$$$$$bbnnnnnbb4444eeeee]ccc	chr1:201122965-201123249(-)$1	284	22	58	14.0704
eee!!iiiiiiiii!!bblllbb22iiiiiiiii22	chr2:220081057-220081346(-)$1	289	212	248	10.7625
:ddddffffff!!cccooooooccc22ffffff333	chr16:89337215-89337492(-)$1	277	102	138	11.2679
cc$$$$$ccc!!ddddnnnnndddd333ccc4444c	chrX:48891161-48891437(-)$1	276	117	153	13.9660
!ggggggg"""eeeeennnnneeeeeggggggg]bb	chr19:15514398-15514683(-)$1	285	16	52	12.2911
fffff####dddd[bbnnnnnbb]dddd4444ffff	chr3:15091307-15091601(-)$1	294	123	159	12.4213
#dddd"""dddd[cccnnnnncccdddd4444dddd	chr11:118514571-118514892(+)$1	321	254	290	13.5056
eeeeffffffdddd[annnnna]dddd]ffffff]e	chr1:156205920-156206199(+)$1	279	47	83	11.2490
ggggg!!ccc[a[cccmmmmccc]a22ccc4444gg	chr11:65315400-65315662(-)$1	262	142	178	12.4846
gggggg==========oooooo==========22gg	chr17:16251903-16252198(-)$1	295	75	111	13.6237
c!!ggggggg[eeeeennnnneeeeeggggggg22c	chr7:65439589-65439841(-)$1	252	55	91	12.4024
cc!!eeeee[a[a[bboooooobb]a]a]eeeee]c	chr2:97373033-97373293(-)$1	260	149	185	12.7285
fffff"""dddd!!cccmmmmccc333dddd333ff	chr1:38274013-38274267(+)$1	254	72	108	12.2864
ccc!!eeeee[a[cccmmmmccca]eeeeeccc22g	chr14:24650703-24650976(-)$1	273	125	161	11.4674
bb[dddd!!dddd[bbnnnnnbb]dddd]dddd]bb	chr8:146015753-146016020(-)$1	267	6	42	11.5592
dddd!!ffffff[cccnnnnncccffffff22dddd	chr2:130911952-130912205(-)$1	253	82	118	12.8562
ddd!!ffffff!!cccnnnnnccc22ffffffdddd	chr5:174936949-174937215(+)$1	266	154	190	14.0196
d[aeeeee[cccddddnnnnndddd]ccc333eeee	chr1:226053556-226053828(-)$1	272	77	113	12.8009
dd!!ccc[eeeee[cccmmmmccc22eeeee]ccc]	chr20:60773540-60773831(+)$1	291	53	89	11.6483
!!ddddccc[bb[cccmmmmcccbb333ccc]dddd	chr3:184043115-184043389(+)$1	274	131	167	10.5857
ffffff[ccc"""cccnnnnnccc333ccc22ffff	chr3:48670975-48671228(-)$1	253	54	90	15.3028
d[ccc"""iiiiiiiiillliiiiiiiii333ccc]	chr19:45160862-45161150(+)$1	288	79	115	12.0028
Bdddd[dddd!!cccooooooccc22dddd22dddd	chr9:127620235-127620498(-)$1	263	56	92	11.2991
ff####ccc"""ddddnnnnndddd333ccc66666	chr13:99101639-99101912(+)$1	273	170	206	12.4231
"=============bbnnnnnbb]============	chr1:28835198-28835452(+)$1	254	203	239	15.3661
dd[dddd!!a[ddddoooooodddd]a22dddd]dd	chr6:43042208-43042461(+)$1	253	168	204	10.6515
eee[bb[eeeee[cccnnnnnccceeeee]bb333e	chrX:57021241-57021531(-)$1	290	177	213	13.3872
gggggbb[bb####bboooooobb333bb]bb22gg	chr14:95085331-95085569(+)$1	238	147	183	11.5099
ccceeeee[ccc[ccclllccc]ccc]eeeee]ccc	chr16:89805429-89805693(+)$1	264	224	260	11.2798
gggggg[dddd"""cccmmmmccc22ddddgggggg	chr17:74084102-74084350(-)$1	248	183	219	11.7056
hh===========cccnnnnnccc333=========	chr9:139838445-139838720(-)$1	275	105	141	16.8786
h[a[ccc[ddddcccbblllbb]ccc]dddd]ccc]	chr2:242169065-242169300(-)$1	235	103	139	10.4809

#otherMatches

#Seq PSSM
UCUGUCUCAUCCCCUUCUAACAGGGACCCAGACAUG	chr19:56614575-56614797(-)$1	222	178	214	11.4382
CCAGUUCCCGCCUCAAGAUGUUUGCAAAGGUACUGG	chr2:131102992-131103266(+)$1	274	37	73	14.4192
GGGGCUGCCAGGUGGCGCCAGGUCCCCUUGGCCAGC	chr20:62368735-62369003(+)$1	268	86	122	13.1016
GAAGACCUGGGUUCCCGGGUGGGGCAUUGCAGUUCU	chr1:1326143-1326415(-)$1	272	115	151	14.6604
UGGGCCUGAGGGAUGCCUGCCGCUCCCUGCCGCAGU	chr6:31725785-31726040(+)$1	255	172	208	12.4929
UCAACGAGCGGGAUCCCUACAAGGCUGAUGACUCUC	chr1:110586098-110586373(+)$1	275	193	229	12.0023
GCCUAGGGGGACACAGCACCAUGUAAAGCCCCGGAU	chr4:2833491-2833759(+)$1	268	36	72	12.4878
GAUGAGAUGGGCAGGCACGAAGUGGGCCACAUCGAC	chr5:172341547-172341833(+)$1	286	189	225	12.3965
GGAUAUGGUGGGAAGCUGGCACGCCUCUCACCUCAG	chr19:45406139-45406352(+)$1	213	98	134	10.9593
GCAAAGCCAAGCAGUCCCGGAGAUGUCAGCUGUGCG	chr3:8669354-8669625(-)$1	271	187	223	13.8472
CUGGACCAGCGGGAGUACCUGACUACCCUGGGGCAG	chr3:47889959-47890224(+)$1	265	159	195	12.8339
CAGCCCCACCGUAGAGAUGCCUUCUUCGGUGACGGC	chr17:78195192-78195461(+)$1	269	151	187	11.5288
UAGCUGUAGGUGUAGUGGAGAACUUUUCUGCCUCUG	chr12:56554877-56555087(+)$1	210	25	61	15.8014
GUGCGUGAUAAGUGCCCUUUCGCGGUGAGCACGCGA	chr13:111935318-111935609(+)$1	291	90	126	12.8366
GGAAUCUCAUCUUUGGCCAAAGCCCUGCUGAGAGUC	chr17:76817032-76817335(-)$1	303	72	108	11.9848
CACCCAGCCUCAGCACUCAUCUGCGCAGCCAUGGAG	chr5:132161804-132162030(-)$1	226	168	204	12.8765
ACCUCUGCGCUGGGAGCUGUGCCUCUGAGCCGGUGU	chr20:62339732-62340010(+)$1	278	38	74	12.2023
CCCAGCCCUGCCCCACUGUCUGUGCUGAGGGGAGGG	chr11:721928-722197(+)$1	269	77	113	14.9358
CGUUCGGCCGCUGCCCGGGCUCUAGGCGCGGCCGGA	chr16:89627208-89627471(+)$1	263	14	50	11.9334
UGUCUUCAUUUGCUUCCACAAGAACCGCGAGGACAG	chr19:2272582-2272848(+)$1	266	199	235	14.3895
GCUGACAGAGUGGAGGUCUAUUCCCGCUCGGCAGCC	chr16:3727529-3727793(-)$1	264	224	260	11.6442
GGUAUGCCAUGGCUGUGAUGAACCACCAUGUAUGCC	chr2:85828504-85828756(-)$1	252	150	186	13.6962
GCCUGGGCCUCGAUGGGCCGUUGUCGGGGCCCGGAG	chr15:44084981-44085259(+)$1	278	50	86	10.4683
GCUACUACUCAGCUCUUGCACAGGCCUGAGUGUGGG	chr15:52553222-52553487(-)$1	265	48	84	13.5636
UGGGAGCCUCCUGUGGAUGUGCUGCAGGAGGCCCCC	chr11:722521-722781(+)$1	260	209	245	15.3397
GCGACCAGGUUUAGCAGGCCUUGGAAUCCUGGAGCC	chr1:201122965-201123249(-)$1	284	22	58	14.0704
AGUUACGUCUUCCUCAAGUUCCUCCAGGGGGGUGGC	chr2:220081057-220081346(-)$1	289	212	248	10.7625
CGCCCAGGCUGGCAUGCCUUCCCGUAGCGGUCUCUG	chr16:89337215-89337492(-)$1	277	102	138	11.2679
CUGAUCACUCCACUCUUUUCCAGAGACCGAGGCAAA	chrX:48891161-48891437(-)$1	276	117	153	13.9660
CAGGGCCCAUCUAGCUUCAGUGGCUAGGGUCUUCUC	chr19:15514398-15514683(-)$1	285	16	52	12.2911
CCUUAUUCUGAAGUGACCACUUUUCUUCUCUUUGAG	chr3:15091307-15091601(-)$1	294	123	159	12.4213
CCUCGCAACCUGGCAGCCACACUGCAGGACAUCGAG	chr11:118514571-118514892(+)$1	321	254	290	13.5056
CCCAACUUGGGACAAGGUGGGCAUGUCACCGAGUGU	chr1:156205920-156206199(+)$1	279	47	83	11.2490
GCAGAGACUGAUGAGUGCCGACUGAACCAGAACAUC	chr11:65315400-65315662(-)$1	262	142	178	12.4846
GGCCCUGGAUGGUGCUGAAAGGGGCAUCAUCUGUGG	chr17:16251903-16252198(-)$1	295	75	111	13.6237
GAGGGGGCUCAUGGGGUGGCUCUCCAGGGUCCUGGC	chr7:65439589-65439841(-)$1	252	55	91	12.4024
CUUCCUCAGUGACAGCUCCACUGCCGCCCCUGAGUG	chr2:97373033-97373293(-)$1	260	149	185	12.7285
GGCCCGGGCUCAGACUGGUCACGGGGGUGAGAGGGG	chr1:38274013-38274267(+)$1	254	72	108	12.2864
GGUUGGCCUGAGACAUUUGUGUGCCCAGGUGCUGGC	chr14:24650703-24650976(-)$1	273	125	161	11.4674
UCAGCUCACAGGGUGCAAGGGGCUCCCUAGGGUGGA	chr8:146015753-146016020(-)$1	267	6	42	11.5592
UCCUAAGGGCAGCAGUCGGGUACUCUGCCUCCGGGA	chr2:130911952-130912205(-)$1	253	82	118	12.8562
UGUUUUAGGACUACGCCGGCUGUGCUGUUCUGGCAG	chr5:174936949-174937215(+)$1	266	154	190	14.0196
GAGGCUGGAGUUGGGUAGGAAACCUGAGCAUACCGG	chr1:226053556-226053828(-)$1	272	77	113	12.8009
UGUCUUCUUUCCUUAGCGCUUGCUUCAGGAAUGGGU	chr20:60773540-60773831(+)$1	291	53	89	11.6483
ACUGGCCCUCUGUCUCCACAGAGCAAUUGGGUGCCA	chr3:184043115-184043389(+)$1	274	131	167	10.5857
AGGGCCUGGAAAAAUCAGGUAGGUAACUCUCUGGUC	chr3:48670975-48671228(-)$1	253	54	90	15.3028
AGGGUUUCUGGGCACGUAGUGCGUGCUCAAUCACUG	chr19:45160862-45161150(+)$1	288	79	115	12.0028
CUGAGUGGCUCUGGAUGGCCCUCCCCAGCCCCCUUA	chr9:127620235-127620498(-)$1	263	56	92	11.2991
AGCACCUGCCCACCUGAGAACCAGGAACGCACCCUC	chr13:99101639-99101912(+)$1	273	170	206	12.4231
AUAGAAGGGAGAGUAGGUAAACUGAUUUUUUUUUUU	chr1:28835198-28835452(+)$1	254	203	239	15.3661
UGCCAGCACCAUGGACCUCUCUUCAAGCAGCUGACA	chr6:43042208-43042461(+)$1	253	168	204	10.6515
UGCAGGGCAGCGGUCCAGGACGGGCGCUGGCCACGG	chrX:57021241-57021531(-)$1	290	177	213	13.3872
AGCAGGGCGACCCUUGCACUCACACCUUCUCCAACU	chr14:95085331-95085569(+)$1	238	147	183	11.5099
CCUCUUCCCUGAUGGCCGCGUCUUCAUGGAAGUAGG	chr16:89805429-89805693(+)$1	264	224	260	11.2798
GGCACCGUACACGAGCUCACCAGCAAUGUGGGUGCU	chr17:74084102-74084350(-)$1	248	183	219	11.7056
CCGCUCUCGGCCUCCCUUCCCGGGCCUGGGCUGAGG	chr9:139838445-139838720(-)$1	275	105	141	16.8786
GGCGGGCUUGGUGUCCUGAGGGUGGCAACUGCGUCG	chr2:242169065-242169300(-)$1	235	103	139	10.4809

#DB
(((((((....((((......))))....))))).)	chr19:56614575-56614797(-)$1	1	178	214	11.4382
((.(((((((((((((.....)))...))))...))	chr2:131102992-131103266(+)$1	1	37	73	14.4192
((((((((((((.(((.....).)).))))).))))	chr20:62368735-62369003(+)$1	1	86	122	13.1016
(((((.(((.(.((((.....))).).).))).)))	chr1:1326143-1326415(-)$1	1	115	151	14.6604
(((((...(((((.((.....)))))))))).))).	chr6:31725785-31726040(+)$1	1	172	208	12.4929
((..((((.(..((((((...)))..)))..).)))	chr1:110586098-110586373(+)$1	1	193	229	12.0023
.((..((((...(((......)))....)))))).)	chr4:2833491-2833759(+)$1	1	36	72	12.4878
((((.(((((((..((.....))..))).))))..)	chr5:172341547-172341833(+)$1	1	189	225	12.3965
(((...(((((((.((......)).)))))))....	chr19:45406139-45406352(+)$1	1	98	134	10.9593
(((.(((...(((.((.....)))))..))).))))	chr3:8669354-8669625(-)$1	1	187	223	13.8472
(((..((((.((.(((.....))).))))))..)))	chr3:47889959-47890224(+)$1	1	159	195	12.8339
(((((((((((.((((.....)))).)))))..)).	chr17:78195192-78195461(+)$1	1	151	187	11.5288
(((..(((((...(((.....)))..)))))..)))	chr12:56554877-56555087(+)$1	1	25	61	15.8014
.((((((...(.(((......))).)...)))))).	chr13:111935318-111935609(+)$1	1	90	126	12.8366
((..(((((.(...(((....)))..).))))).))	chr17:76817032-76817335(-)$1	1	72	108	11.9848
((....((....(((......)))...))..)))..	chr5:132161804-132162030(-)$1	1	168	204	12.8765
((..(((.(((.((((......)))).)))))).))	chr20:62339732-62340010(+)$1	1	38	74	12.2023
((((.((((.((((((.....)))....))).))))	chr11:721928-722197(+)$1	1	77	113	14.9358
(((((((((((.(((.((...)).))))))))))))	chr16:89627208-89627471(+)$1	1	14	50	11.9334
(((((((...((.(((.....))).)).))))))).	chr19:2272582-2272848(+)$1	1	199	235	14.3895
((((.(.((((((.((.....)))))))).))))))	chr16:3727529-3727793(-)$1	1	224	260	11.6442
(((((((.((((..((.....))..)))))))))))	chr2:85828504-85828756(-)$1	1	150	186	13.6962
((((((((((((((((....)))))))))))))).(	chr15:44084981-44085259(+)$1	1	50	86	10.4683
..(((.((((((.(((.....))).)))))))))))	chr15:52553222-52553487(-)$1	1	48	84	13.5636
)(((.(((((((((((.....))))))))))).)))	chr11:722521-722781(+)$1	1	209	245	15.3397
((..(((((.....((.....))....))))).)))	chr1:201122965-201123249(-)$1	1	22	58	14.0704
(((..(((((((((..((...))..)))))))))..	chr2:220081057-220081346(-)$1	1	212	248	10.7625
.((((((((((..(((......)))..))))))...	chr16:89337215-89337492(-)$1	1	102	138	11.2679
((.....(((..((((.....))))...)))....)	chrX:48891161-48891437(-)$1	1	117	153	13.9660
.(((((((...(((((.....)))))))))))).))	chr19:15514398-15514683(-)$1	1	16	52	12.2911
(((((....((((.((.....)).))))....))))	chr3:15091307-15091601(-)$1	1	123	159	12.4213
.((((...((((.(((.....)))))))....))))	chr11:118514571-118514892(+)$1	1	254	290	13.5056
((((((((((((((.(.....).)))).)))))).)	chr1:156205920-156206199(+)$1	1	47	83	11.2490
(((((..(((.(.(((....))).)..)))....))	chr11:65315400-65315662(-)$1	1	142	178	12.4846
((((((((((((((((......))))))))))..))	chr17:16251903-16252198(-)$1	1	75	111	13.6237
(..(((((((.(((((.....))))))))))))..)	chr7:65439589-65439841(-)$1	1	55	91	12.4024
((..(((((.(.(.((......)).).).))))).)	chr2:97373033-97373293(-)$1	1	149	185	12.7285
(((((...((((..(((....)))...))))...))	chr1:38274013-38274267(+)$1	1	72	108	12.2864
(((..(((((.(.(((....)))).))))))))..)	chr14:24650703-24650976(-)$1	1	125	161	11.4674
((.((((..((((.((.....)).)))).)))).))	chr8:146015753-146016020(-)$1	1	6	42	11.5592
((((..((((((.(((.....)))))))))..))))	chr2:130911952-130912205(-)$1	1	82	118	12.8562
(((..((((((..(((.....)))..))))))))))	chr5:174936949-174937215(+)$1	1	154	190	14.0196
(.((((((.(((((((.....)))).)))...))))	chr1:226053556-226053828(-)$1	1	77	113	12.8009
((..(((.(((((.(((....)))..))))).))).	chr20:60773540-60773831(+)$1	1	53	89	11.6483
..(((((((.((.(((....)))))...))).))))	chr3:184043115-184043389(+)$1	1	131	167	10.5857
((((((.(((...(((.....)))...)))..))))	chr3:48670975-48671228(-)$1	1	54	90	15.3028
(.(((...(((((((((...)))))))))...))).	chr19:45160862-45161150(+)$1	1	79	115	12.0028
(((((.((((..(((......)))..))))..))))	chr9:127620235-127620498(-)$1	1	56	92	11.2991
((....(((...((((.....))))...))).....	chr13:99101639-99101912(+)$1	1	170	206	12.4231
.(((((((((((((((.....)).))))))))))))	chr1:28835198-28835452(+)$1	1	203	239	15.3661
((.((((..(.((((......)))).)..)))).))	chr6:43042208-43042461(+)$1	1	168	204	10.6515
(((.((.(((((.(((.....)))))))).))...)	chrX:57021241-57021531(-)$1	1	177	213	13.3872
(((((((.((....((......))...)).))..))	chr14:95085331-95085569(+)$1	1	147	183	11.5099
((((((((.(((.(((...))).))).))))).)))	chr16:89805429-89805693(+)$1	1	224	260	11.2798
((((((.((((...(((....)))..))))))))))	chr17:74084102-74084350(-)$1	1	183	219	11.7056
))((((((((((((((.....)))...)))))))))	chr9:139838445-139838720(-)$1	1	105	141	16.8786
(.(.(((.(((((((((...)).))).)))).))).	chr2:242169065-242169300(-)$1	1	103	139	10.4809

#PSSM
c : 0.21	d : 0.17	g : 0.14	e : 0.12	f : 0.08	h : 0.05	! : 0.05	" : 0.03	[ : 0.01	= : 0.01	F : 0.01	: : 0.01	# : 0.01	b : 0.01	B : 0.01	
c : 0.22	d : 0.15	g : 0.15	e : 0.12	f : 0.10	[ : 0.05	b : 0.03	h : 0.03	= : 0.03	! : 0.03	F : 0.01	" : 0.01	
g : 0.15	c : 0.14	e : 0.12	! : 0.12	d : 0.10	f : 0.08	= : 0.07	[ : 0.05	b : 0.03	# : 0.03	a : 0.03	h : 0.01	$ : 0.01	
! : 0.21	g : 0.15	d : 0.14	e : 0.10	f : 0.08	c : 0.08	= : 0.07	[ : 0.05	# : 0.03	b : 0.01	" : 0.01	$ : 0.01	
g : 0.15	d : 0.14	c : 0.12	! : 0.12	e : 0.10	f : 0.10	[ : 0.07	= : 0.07	b : 0.03	# : 0.03	" : 0.01	$ : 0.01	
d : 0.15	e : 0.14	g : 0.12	" : 0.08	f : 0.08	= : 0.08	c : 0.07	[ : 0.05	b : 0.05	# : 0.05	! : 0.03	a : 0.01	i : 0.01	$ : 0.01	
e : 0.15	d : 0.15	c : 0.12	g : 0.10	f : 0.10	= : 0.10	" : 0.07	[ : 0.07	b : 0.03	i : 0.01	$ : 0.01	# : 0.01	! : 0.01	
e : 0.17	" : 0.12	d : 0.12	c : 0.10	= : 0.10	f : 0.10	[ : 0.08	g : 0.05	# : 0.03	b : 0.03	! : 0.03	i : 0.01	
e : 0.17	d : 0.17	c : 0.12	= : 0.10	f : 0.10	" : 0.07	# : 0.05	[ : 0.05	b : 0.03	g : 0.03	i : 0.03	! : 0.03	
d : 0.15	e : 0.12	c : 0.12	[ : 0.10	" : 0.10	= : 0.10	f : 0.10	# : 0.03	a : 0.03	g : 0.03	i : 0.03	$ : 0.01	b : 0.01	
d : 0.15	c : 0.10	= : 0.10	e : 0.08	" : 0.08	f : 0.08	a : 0.07	[ : 0.07	# : 0.05	! : 0.05	b : 0.05	i : 0.03	g : 0.01	$ : 0.01	
d : 0.17	e : 0.10	[ : 0.10	" : 0.10	! : 0.08	c : 0.08	= : 0.08	b : 0.05	f : 0.05	# : 0.03	i : 0.03	a : 0.03	g : 0.01	$ : 0.01	
d : 0.19	[ : 0.19	c : 0.15	! : 0.08	= : 0.08	e : 0.07	" : 0.07	a : 0.03	i : 0.03	g : 0.01	f : 0.01	$ : 0.01	# : 0.01	
c : 0.43	d : 0.14	[ : 0.14	= : 0.07	! : 0.05	" : 0.03	i : 0.03	e : 0.03	b : 0.01	$ : 0.01	# : 0.01	
c : 0.50	b : 0.22	d : 0.12	= : 0.05	e : 0.03	! : 0.01	[ : 0.01	i : 0.01	
c : 0.40	b : 0.22	o : 0.10	d : 0.08	= : 0.05	a : 0.03	e : 0.03	[ : 0.01	! : 0.01	i : 0.01	
n : 0.54	o : 0.21	c : 0.08	m : 0.07	b : 0.05	i : 0.01	l : 0.01	
n : 0.54	o : 0.21	m : 0.14	l : 0.05	b : 0.03	c : 0.01	
n : 0.54	o : 0.21	m : 0.14	l : 0.10	
n : 0.54	o : 0.21	m : 0.14	l : 0.08	c : 0.01	
n : 0.54	o : 0.21	m : 0.07	c : 0.07	l : 0.05	= : 0.01	i : 0.01	b : 0.01	
c : 0.45	b : 0.21	d : 0.10	o : 0.10	a : 0.03	= : 0.03	e : 0.03	i : 0.01	
c : 0.45	b : 0.24	d : 0.12	] : 0.07	= : 0.05	e : 0.03	i : 0.01	
c : 0.45	d : 0.14	b : 0.08	] : 0.08	e : 0.05	2 : 0.05	= : 0.05	f : 0.01	4 : 0.01	a : 0.01	i : 0.01	
d : 0.19	2 : 0.17	] : 0.14	3 : 0.10	c : 0.08	e : 0.07	= : 0.07	4 : 0.05	b : 0.03	f : 0.03	a : 0.01	i : 0.01	
3 : 0.15	2 : 0.15	d : 0.10	e : 0.08	c : 0.08	4 : 0.07	] : 0.07	= : 0.07	a : 0.05	f : 0.05	b : 0.03	i : 0.03	g : 0.01	
3 : 0.17	e : 0.12	d : 0.12	] : 0.08	4 : 0.07	c : 0.07	f : 0.07	= : 0.07	g : 0.05	2 : 0.05	b : 0.03	a : 0.03	i : 0.03	
d : 0.17	e : 0.15	c : 0.10	= : 0.10	f : 0.08	3 : 0.07	4 : 0.05	g : 0.05	] : 0.05	a : 0.03	2 : 0.03	b : 0.03	i : 0.03	
c : 0.19	e : 0.15	d : 0.14	= : 0.10	f : 0.10	] : 0.07	g : 0.07	4 : 0.05	b : 0.03	i : 0.03	3 : 0.01	2 : 0.01	
e : 0.17	d : 0.17	c : 0.17	f : 0.10	= : 0.10	g : 0.08	] : 0.05	2 : 0.03	4 : 0.03	3 : 0.03	i : 0.01	
e : 0.15	c : 0.15	d : 0.14	g : 0.10	= : 0.10	2 : 0.08	f : 0.08	4 : 0.05	3 : 0.03	b : 0.03	a : 0.01	i : 0.01	
] : 0.12	e : 0.10	g : 0.10	2 : 0.10	= : 0.10	c : 0.08	3 : 0.07	d : 0.07	f : 0.07	4 : 0.07	b : 0.03	a : 0.01	i : 0.01	6 : 0.01	
d : 0.15	c : 0.14	e : 0.10	g : 0.10	] : 0.08	2 : 0.08	f : 0.08	= : 0.07	3 : 0.05	4 : 0.03	b : 0.01	8 : 0.01	i : 0.01	6 : 0.01	
c : 0.15	d : 0.12	e : 0.08	g : 0.08	f : 0.08	2 : 0.08	] : 0.08	3 : 0.07	= : 0.07	b : 0.03	4 : 0.03	8 : 0.01	h : 0.01	i : 0.01	6 : 0.01	
g : 0.14	c : 0.14	d : 0.14	f : 0.08	2 : 0.08	] : 0.07	b : 0.07	e : 0.07	= : 0.07	3 : 0.03	8 : 0.01	h : 0.01	: : 0.01	4 : 0.01	6 : 0.01	
d : 0.17	g : 0.14	c : 0.12	e : 0.10	f : 0.08	b : 0.07	] : 0.07	2 : 0.07	= : 0.07	: : 0.01	8 : 0.01	h : 0.01	3 : 0.01	6 : 0.01	

#score	724.127334611578
#seq	57
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_UTR_m3_run1.txt

#BEAR
F}FFFFFFDDDD}BBZZZCCC}A}FF	chr20:61584256-61584517(+)$1	261	228	254	12.4597
GGGGGGA}CCCCCCCCC}CCC}BBYY	chr16:88744533-88744789(+)$1	256	219	245	14.4678
:FFFFFFYYDDDD}DDDD}A}BBDDD	chr19:5894958-5895217(-)$1	259	138	164	12.7080
GGGGGGG}AYYDDDD______JJJJJ	chr20:62272015-62272340(-)$1	325	256	282	13.7891
HHHHH}AZZZDDDDZZZA}CCC}DDD	chr17:36884634-36884949(+)$1	315	246	272	14.3896
IIIIIIII}CCC}A}ACCCZZZDDDD	chr1:36789189-36789483(+)$1	294	251	277	12.6310
HHHHHHHYYFFFFFF}DDDDYYDDDD	chr9:130703800-130704095(-)$1	295	193	219	14.8282
GGGGGGGBB}CCCDDDDFFFFFF:::	chr16:4661147-4661402(-)$1	255	207	233	13.2431
GGGGGGCCC}DDDDYYBBYYA}HHHH	chr8:81398834-81399146(+)$1	312	259	285	14.2510
HHHHHHHYYAYYBB}HHHHHHHH}BB	chr12:81331495-81331773(+)$1	278	204	230	13.0644
GGGGGGGYYDDDDYYFFFFFF:::::	chr6:32938805-32939037(+)$1	232	205	231	12.7773
GGGGGGGBB}BB}A}EEEEE~~~~EE	chr20:3847084-3847339(+)$1	255	222	248	16.5250
GGGGGGG::EEEEEEEEEE{DDDDKK	chr2:159314478-159314736(+)$1	258	29	55	12.0183
HHHHHHH~~~~EEEEEZZZIIIIIII	chr20:62563421-62563694(+)$1	273	176	202	14.4397
GGGGGGGFFFFFF}BB}CCC}FFFFF	chr7:100163801-100164063(+)$1	262	219	245	14.0092
IIIIIIIIIYYCCCYYBBYYFFFFFF	chr19:4065577-4065824(-)$1	247	157	183	13.7386
GGGFFFFFFFFFFFF}BB}ABBEEEE	chr16:70695541-70695834(-)$1	293	266	292	13.3796
IIIIIII}AYYBB}A}BB}BB~~~~E	chr20:57267815-57268088(+)$1	273	211	237	14.9098
HHHHHHH~~~~BB}CCC}FFFFFF__	chr11:12696159-12696432(+)$1	273	196	222	15.0457
GGGGGGGBB}DDDD~~~~FFFFFFDD	chr12:31477119-31477398(-)$1	279	125	151	16.0070
GGGGGGGCCC}CCC}A}EEEEEFFFF	chr19:42788491-42788758(+)$1	267	203	229	15.4819
BFFFFFF~~~~CCCZZZCCCYYCCC}	chr14:102786150-102786414(+)$1	264	228	254	14.1240
BB}FFFFFFZZZBB}FFFFFF}DDDD	chr16:2551531-2551798(+)$1	267	207	233	11.5393
HHHHHHH}BB}DDDD}DDDDEEEEEB	chr16:75284635-75284917(-)$1	282	133	159	16.0481
GGGGG}BBBB}DDDD~~~~BB}DDDD	chr17:74380089-74380356(+)$1	267	233	259	15.4335
HHHHHHH}BBYYCCCBB{HHHHHHHH	chr6:160182730-160182994(-)$1	264	87	113	12.3913
HHHHHHH}DDDD}A}EEEEEEEEEE}	chr6:36164477-36164736(-)$1	259	177	203	15.6698
HHHHFFFFFF______DDDDEEEEE:	chr3:24536578-24536849(-)$1	271	215	241	13.2436
GGGGGGGYYA}DDDDYYA~~~~DDDD	chr7:32931171-32931434(-)$1	263	150	176	17.0915
GGGGGGGYYCCC}BBYYDDDD}BB}H	chr17:38278461-38278739(+)$1	278	197	223	16.2144
GGGGGGG}CCC}CCCDDDDZZZHHHH	chr20:62330414-62330685(-)$1	271	183	209	13.3541
HHHHHHH~~~~FFFFFFYYDDDD}II	chr19:59056459-59056745(+)$1	286	191	217	14.7407
HHHHHHH~~~~DDDD}BB}DDDDYYC	chr2:242254666-242254975(-)$1	309	278	304	16.3487
GGGGGGG}BB}IIIIIIIII}DDDD:	chr14:71374115-71374390(+)$1	275	248	274	13.0632
GGGGGGG~~~~CCCYYBBCCC}DDDD	chr16:447639-447876(+)$1	237	211	237	17.7012
YGGGGGGG~~~~EEEEEYYDDDD:::	chr11:75190296-75190543(-)$1	247	221	247	12.9280
JJJJJ}BB~~~~BB}EEEEEYYDDDD	chr11:64545100-64545354(-)$1	254	187	213	13.5186
BB}FFFFFFYYA}BB}CCC}EEEEEa	chr6:41703075-41703343(-)$1	268	117	143	12.3245
HHHHHHH}BB}CCC}BB}EEEEEZZZ	chr2:159314539-159314796(+)$1	257	220	246	15.7273
GGGGGGG~~~~JJJJJJJJJJHHHHH	chr19:55899432-55899725(+)$1	293	100	126	11.5787
:FFFFFF}BB}A}DDDDBB}DDDD}B	chr17:74349373-74349635(-)$1	262	235	261	13.0802
GGGGGGGZZZA}CCCIIIIIIIII::	chr7:128828635-128828896(+)$1	261	235	261	12.4919
GGGGGGG}A}BBBBYYDDDDA}DDDD	chr6:30852101-30852390(+)$1	289	240	266	16.8099
HHHHHHH}EEEEE~~~~CCCEEEEE}	chr14:103801527-103801802(+)$1	275	237	263	16.3137
HHHHHHH?????EEEEE~~~~EEEEE	chr1:16450959-16451215(-)$1	256	118	144	14.5089
HHHHHHHYYBBYYDDDDZZZCCC:::	chr12:31478545-31478789(-)$1	244	218	244	13.2748
GGGGGG}CCC}CCCYYDDDD~~~~DD	chr16:89936959-89937246(+)$1	287	258	284	15.0678
GGGGGGGYYDDDDBBZZZA}FFFFFF	chr17:38334321-38334610(+)$1	289	230	256	15.7204
GGGGGAFFFFFFBBYYCCCCCC::::	chr1:90308929-90309162(+)$1	233	204	230	11.8321
GGGGGGGYYDDDDZZZEEEEE}A}EE	chr2:97535530-97535829(-)$1	299	232	258	16.3823
GGGGGGGYYCCC}BB}CCCEEEEE:b	chr1:27022785-27022996(+)$1	211	144	170	15.5632
GGGGGGG}BBBBBBYYDDDD}EEEEE	chr22:37415194-37415547(-)$1	353	265	291	17.1584

#otherMatches

#Seq PSSM
GGGGCUCUUCCAGGCAGGGCUAUGUU	chr20:61584256-61584517(+)$1	261	228	254	12.4597
GCCAGGCCCCGCCCUCCCAGACUCCU	chr16:88744533-88744789(+)$1	256	219	245	14.4678
UGCUGGGAAGCAACCUGGACUCCGGC	chr19:5894958-5895217(-)$1	259	138	164	12.7080
CCUUCCUGGAAGCCUGCAGUUGGGGG	chr20:62272015-62272340(-)$1	325	256	282	13.7891
GCUCCUCCCAUCACAGAUGACAGCUC	chr17:36884634-36884949(+)$1	315	246	272	14.3896
cucugccugcgugcgggccaagggcu	chr1:36789189-36789483(+)$1	294	251	277	12.6310
UGGAACUCCCUGGCAUUGGGAACAGA	chr9:130703800-130704095(-)$1	295	193	219	14.8282
agggaggggacccaggagccaccuag	chr16:4661147-4661402(-)$1	255	207	233	13.2431
GGGUUGGUCACCGCUAGCGGCGGCGG	chr8:81398834-81399146(+)$1	312	259	285	14.2510
AUCCGAGAGCGACUGCAUCGCCGGGC	chr12:81331495-81331773(+)$1	278	204	230	13.0644
GUUUGGAGAUUUUAAUCCCACUUUUA	chr6:32938805-32939037(+)$1	232	205	231	12.7773
CUGCUCUCCAGGAGCCCAACUGCCUU	chr20:3847084-3847339(+)$1	255	222	248	16.5250
CCCCUGGACCGCUACCCGGAGAGCGA	chr2:159314478-159314736(+)$1	258	29	55	12.0183
GGCCCCUUCCGAGGUUGACACCGUGU	chr20:62563421-62563694(+)$1	273	176	202	14.4397
GACAGACCUGGUCAGGGGGUGGGUGG	chr7:100163801-100164063(+)$1	262	219	245	14.0092
UGCGCGGCCUAGCGCAggccgggccc	chr19:4065577-4065824(-)$1	247	157	183	13.7386
UUGUCCAUCCCUGAGACCACCCCCGC	chr16:70695541-70695834(-)$1	293	266	292	13.3796
UGCUCGGGCAGCUGCACCACCUGCAC	chr20:57267815-57268088(+)$1	273	211	237	14.9098
GCGCUGCGGUGGCUCCCUGGGCCGAG	chr11:12696159-12696432(+)$1	273	196	222	15.0457
GUUUCUCGUGGCCCGGGAGCCUGUGU	chr12:31477119-31477398(-)$1	279	125	151	16.0070
cguggggcggccggaggggggcggcg	chr19:42788491-42788758(+)$1	267	203	229	15.4819
CUCCCGCCCCAGGUGAGGCGUCGGGA	chr14:102786150-102786414(+)$1	264	228	254	14.1240
CGUGUUCCCAUCUGAAGAGGUAGCCC	chr16:2551531-2551798(+)$1	267	207	233	11.5393
cgccgcgggcUUUGCAGCCCCGCACG	chr16:75284635-75284917(-)$1	282	133	159	16.0481
CCCGGCGCUCGCUCCGACACGAGUUC	chr17:74380089-74380356(+)$1	267	233	259	15.4335
cgcggggcggaagugaggccggggcg	chr6:160182730-160182994(-)$1	264	87	113	12.3913
GAGGGGGAAUGGAGCCGCCGCUGCUG	chr6:36164477-36164736(-)$1	259	177	203	15.6698
CCGGGCCCGGAGUAAGACAGCGCCCG	chr3:24536578-24536849(-)$1	271	215	241	13.2436
UCGGCCGGAGGCGGAGGCGAGACCCC	chr7:32931171-32931434(-)$1	263	150	176	17.0915
CGGGCCUCAGCCGCGGCCUCCACGUC	chr17:38278461-38278739(+)$1	278	197	223	16.2144
GUGGCUGGUGCAGCCCCCCGGUUGCU	chr20:62330414-62330685(-)$1	271	183	209	13.3541
GUUGGAGAAAAGAAGGCUCGGGGAGG	chr19:59056459-59056745(+)$1	286	191	217	14.7407
CCUCUCUGGGAUUGGCUGCGCGCACG	chr2:242254666-242254975(-)$1	309	278	304	16.3487
uccucucgggucuccuccuccucguu	chr14:71374115-71374390(+)$1	275	248	274	13.0632
CCACCUCACAGGACGAUCCAUGUCCC	chr16:447639-447876(+)$1	237	211	237	17.7012
ucugggcaaauaguuucucugcucug	chr11:75190296-75190543(-)$1	247	221	247	12.9280
AGUCCGCUGGUGUCGGGAACAGGGGU	chr11:64545100-64545354(-)$1	254	187	213	13.5186
cggGCCUCCCUGGUGGCACGGGGCCG	chr6:41703075-41703343(-)$1	268	117	143	12.3245
CGCCUUCCCUCCCCAGCUCUCGCCGC	chr2:159314539-159314796(+)$1	257	220	246	15.7273
UCCCCACACCCAGCAUUGGCCUAGGG	chr19:55899432-55899725(+)$1	293	100	126	11.5787
AGCCCCCCGCCCCGUGACUGGGUCCG	chr17:74349373-74349635(-)$1	262	235	261	13.0802
AUUCUCUGGGCGCACAGGUCGCCUGA	chr7:128828635-128828896(+)$1	261	235	261	12.4919
CCUCCCGACACCCGAGccccgccggc	chr6:30852101-30852390(+)$1	289	240	266	16.8099
CAGGCAUUUCCCUACCAGUCACAGCU	chr14:103801527-103801802(+)$1	275	237	263	16.3137
GCAGGGGGCCCCGCCAGGGCUGGGGA	chr1:16450959-16451215(-)$1	256	118	144	14.5089
GAGAGGAAAGCGACUCGUUGGCCACC	chr12:31478545-31478789(-)$1	244	218	244	13.2748
gcguggugguucaggccuguaauucc	chr16:89936959-89937246(+)$1	287	258	284	15.0678
GCCCCCGAGCGGCCCGAGCAUCUUCU	chr17:38334321-38334610(+)$1	289	230	256	15.7204
UUCCUCCCCGCUGCCGACACUUGGAU	chr1:90308929-90309162(+)$1	233	204	230	11.8321
CUUGCGUGAGGCUGGAGCCGCGGGGC	chr2:97535530-97535829(-)$1	299	232	258	16.3823
CCUGGGCAACCCGCCGCCGCCGCCGC	chr1:27022785-27022996(+)$1	211	144	170	15.5632
CUCUGGAGGCGGGCGAGCUCGGGCUG	chr22:37415194-37415547(-)$1	353	265	291	17.1584

#DB
).)))))))))).))...))).).))	chr20:61584256-61584517(+)$1	1	228	254	12.4597
))))))).))))))))).))).))..	chr16:88744533-88744789(+)$1	1	219	245	14.4678
.))))))..)))).)))).).)))))	chr19:5894958-5895217(-)$1	1	138	164	12.7080
))))))).)..))))......)))))	chr20:62272015-62272340(-)$1	1	256	282	13.7891
))))).)...))))...).))).)))	chr17:36884634-36884949(+)$1	1	246	272	14.3896
)))))))).))).).))))...))))	chr1:36789189-36789483(+)$1	1	251	277	12.6310
)))))))..)))))).))))..))))	chr9:130703800-130704095(-)$1	1	193	219	14.8282
))))))))).)))))))))))))...	chr16:4661147-4661402(-)$1	1	207	233	13.2431
))))))))).))))..))..).))))	chr8:81398834-81399146(+)$1	1	259	285	14.2510
)))))))..)..)).)))))))).))	chr12:81331495-81331773(+)$1	1	204	230	13.0644
)))))))..))))..)))))).....	chr6:32938805-32939037(+)$1	1	205	231	12.7773
))))))))).)).).)))))....))	chr20:3847084-3847339(+)$1	1	222	248	16.5250
(((((((..((((((((((.((((..	chr2:159314478-159314736(+)$1	1	29	55	12.0183
)))))))....)))))...)))))))	chr20:62563421-62563694(+)$1	1	176	202	14.4397
))))))))))))).)).))).)))))	chr7:100163801-100164063(+)$1	1	219	245	14.0092
)))))))))..)))..))..))))))	chr19:4065577-4065824(-)$1	1	157	183	13.7386
))))))))))))))).)).)))))))	chr16:70695541-70695834(-)$1	1	266	292	13.3796
))))))).)..)).).)).))....)	chr20:57267815-57268088(+)$1	1	211	237	14.9098
)))))))....)).))).))))))..	chr11:12696159-12696432(+)$1	1	196	222	15.0457
))))))))).))))....))))))))	chr12:31477119-31477398(-)$1	1	125	151	16.0070
)))))))))).))).).)))))))))	chr19:42788491-42788758(+)$1	1	203	229	15.4819
)))))))....)))...)))..))).	chr14:102786150-102786414(+)$1	1	228	254	14.1240
)).))))))...)).)))))).))))	chr16:2551531-2551798(+)$1	1	207	233	11.5393
))))))).)).)))).))))((((((	chr16:75284635-75284917(-)$1	1	133	159	16.0481
))))).)))).))))....)).))))	chr17:74380089-74380356(+)$1	1	233	259	15.4335
))))))).))..)))((.((((((((	chr6:160182730-160182994(-)$1	1	87	113	12.3913
))))))).)))).).)))))))))).	chr6:36164477-36164736(-)$1	1	177	203	15.6698
))))))))))......))))))))).	chr3:24536578-24536849(-)$1	1	215	241	13.2436
)))))))..).))))..)....))))	chr7:32931171-32931434(-)$1	1	150	176	17.0915
)))))))..))).))..)))).)).)	chr17:38278461-38278739(+)$1	1	197	223	16.2144
))))))).))).)))))))...))))	chr20:62330414-62330685(-)$1	1	183	209	13.3541
)))))))....))))))..)))).))	chr19:59056459-59056745(+)$1	1	191	217	14.7407
)))))))....)))).)).))))..)	chr2:242254666-242254975(-)$1	1	278	304	16.3487
))))))).)).))))))))).)))).	chr14:71374115-71374390(+)$1	1	248	274	13.0632
)))))))....)))..))))).))))	chr16:447639-447876(+)$1	1	211	237	17.7012
.)))))))....)))))..))))...	chr11:75190296-75190543(-)$1	1	221	247	12.9280
))))).))....)).)))))..))))	chr11:64545100-64545354(-)$1	1	187	213	13.5186
)).))))))..).)).))).)))))(	chr6:41703075-41703343(-)$1	1	117	143	12.3245
))))))).)).))).)).)))))...	chr2:159314539-159314796(+)$1	1	220	246	15.7273
)))))))....))))))))))(((((	chr19:55899432-55899725(+)$1	1	100	126	11.5787
.)))))).)).).)))))).)))).)	chr17:74349373-74349635(-)$1	1	235	261	13.0802
)))))))...).))))))))))))..	chr7:128828635-128828896(+)$1	1	235	261	12.4919
))))))).).))))..))))).))))	chr6:30852101-30852390(+)$1	1	240	266	16.8099
))))))).)))))....)))))))).	chr14:103801527-103801802(+)$1	1	237	263	16.3137
))))))).....)))))....)))))	chr1:16450959-16451215(-)$1	1	118	144	14.5089
)))))))..))..))))...)))...	chr12:31478545-31478789(-)$1	1	218	244	13.2748
)))))).))).)))..))))....))	chr16:89936959-89937246(+)$1	1	258	284	15.0678
)))))))..))))))...).))))))	chr17:38334321-38334610(+)$1	1	230	256	15.7204
))))))))))))))..))))))....	chr1:90308929-90309162(+)$1	1	204	230	11.8321
)))))))..))))...))))).).))	chr2:97535530-97535829(-)$1	1	232	258	16.3823
)))))))..))).)).)))))))).(	chr1:27022785-27022996(+)$1	1	144	170	15.5632
))))))).))))))..)))).)))))	chr22:37415194-37415547(-)$1	1	265	291	17.1584

#PSSM
G : 0.49	H : 0.28	I : 0.05	B : 0.05	: : 0.03	F : 0.01	Y : 0.01	J : 0.01	
G : 0.51	H : 0.28	F : 0.05	I : 0.05	B : 0.03	} : 0.01	J : 0.01	
G : 0.51	H : 0.28	F : 0.07	I : 0.05	} : 0.03	J : 0.01	
G : 0.49	H : 0.28	F : 0.13	I : 0.05	J : 0.01	
G : 0.49	H : 0.26	F : 0.15	I : 0.05	J : 0.01	
G : 0.46	H : 0.24	F : 0.15	} : 0.05	I : 0.05	A : 0.01	
G : 0.40	H : 0.24	F : 0.17	I : 0.05	A : 0.03	B : 0.03	C : 0.01	} : 0.01	
} : 0.24	Y : 0.19	F : 0.13	~ : 0.13	B : 0.09	C : 0.05	Z : 0.03	I : 0.03	: : 0.01	G : 0.01	? : 0.01	
Y : 0.19	B : 0.19	~ : 0.17	F : 0.11	C : 0.09	A : 0.05	D : 0.03	Z : 0.03	} : 0.01	: : 0.01	I : 0.01	E : 0.01	? : 0.01	
~ : 0.17	B : 0.15	C : 0.13	D : 0.11	F : 0.09	} : 0.09	Y : 0.07	Z : 0.05	A : 0.03	E : 0.03	? : 0.01	
D : 0.17	~ : 0.17	} : 0.15	C : 0.11	Y : 0.11	F : 0.07	B : 0.07	E : 0.03	Z : 0.01	_ : 0.01	A : 0.01	? : 0.01	
D : 0.26	C : 0.21	F : 0.09	B : 0.09	Y : 0.05	E : 0.05	} : 0.03	~ : 0.03	A : 0.03	Z : 0.01	_ : 0.01	I : 0.01	J : 0.01	? : 0.01	
D : 0.23	C : 0.21	} : 0.15	B : 0.15	E : 0.09	F : 0.07	_ : 0.01	I : 0.01	J : 0.01	Y : 0.01	
B : 0.21	D : 0.21	C : 0.19	} : 0.07	E : 0.07	A : 0.05	F : 0.05	Y : 0.01	_ : 0.01	I : 0.01	J : 0.01	~ : 0.01	Z : 0.01	
D : 0.17	} : 0.15	Y : 0.15	B : 0.11	C : 0.09	E : 0.07	Z : 0.05	F : 0.05	~ : 0.03	A : 0.01	_ : 0.01	I : 0.01	J : 0.01	
Y : 0.17	} : 0.13	E : 0.13	Z : 0.09	D : 0.09	F : 0.05	B : 0.05	~ : 0.05	C : 0.03	_ : 0.03	A : 0.03	I : 0.03	H : 0.01	J : 0.01	
D : 0.21	B : 0.15	E : 0.13	C : 0.11	Z : 0.09	F : 0.05	~ : 0.05	} : 0.03	Y : 0.03	I : 0.03	_ : 0.01	H : 0.01	J : 0.01	
D : 0.17	C : 0.13	B : 0.13	E : 0.11	Z : 0.07	} : 0.05	F : 0.05	~ : 0.05	A : 0.03	Y : 0.03	I : 0.03	_ : 0.01	H : 0.01	{ : 0.01	J : 0.01	
C : 0.19	D : 0.15	E : 0.13	} : 0.09	F : 0.09	Y : 0.07	~ : 0.05	H : 0.03	Z : 0.03	I : 0.03	_ : 0.01	J : 0.01	B : 0.01	A : 0.01	
D : 0.19	C : 0.15	E : 0.13	F : 0.09	Z : 0.05	I : 0.05	} : 0.05	A : 0.03	Y : 0.03	H : 0.03	B : 0.03	~ : 0.03	_ : 0.01	{ : 0.01	J : 0.01	
E : 0.17	F : 0.13	C : 0.11	D : 0.11	} : 0.07	~ : 0.07	Y : 0.05	B : 0.05	Z : 0.03	A : 0.03	H : 0.03	I : 0.03	_ : 0.01	J : 0.01	
E : 0.19	} : 0.17	F : 0.11	D : 0.11	~ : 0.07	C : 0.05	Y : 0.05	H : 0.05	B : 0.03	Z : 0.03	I : 0.03	J : 0.01	: : 0.01	
D : 0.26	E : 0.19	F : 0.13	H : 0.09	B : 0.05	~ : 0.05	A : 0.03	: : 0.03	I : 0.03	C : 0.03	J : 0.01	} : 0.01	
D : 0.24	E : 0.17	F : 0.11	: : 0.09	} : 0.07	H : 0.07	~ : 0.05	B : 0.03	I : 0.03	J : 0.01	C : 0.01	Y : 0.01	Z : 0.01	
D : 0.24	E : 0.19	: : 0.13	F : 0.09	H : 0.07	Y : 0.03	I : 0.03	} : 0.03	J : 0.01	B : 0.01	K : 0.01	~ : 0.01	_ : 0.01	C : 0.01	Z : 0.01	
D : 0.23	: : 0.15	E : 0.11	F : 0.09	H : 0.09	B : 0.05	} : 0.05	I : 0.03	Y : 0.01	J : 0.01	K : 0.01	_ : 0.01	C : 0.01	a : 0.01	Z : 0.01	b : 0.01	

#score	745.4107633677288
#seq	52
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_CDS_m1_run1.txt

#BEAR
c[eeeeeccc[ddddnnnnndddd]ccc]eeeee2	chr14:31495152-31495415(-)$1	263	153	188	15.1305
eeeee[ddddbbddddmmmmdddd]bb]dddd]ee	chr11:6566360-6566632(+)$1	272	220	255	10.1177
b[bb[a!!ccc[cccooooooccc]ccc22a]bb]	chr9:140323182-140323436(+)$1	254	167	202	11.3052
eeeee[bbdddd[bbnnnnnbbdddd]bb]eeeee	chr3:9711015-9711275(+)$1	260	84	119	10.8509
ddeeeeea[dddd[annnnna]dddd22a]eeeee	chr22:22277411-22277647(-)$1	236	155	190	12.2737
g!!eeeeeddddcccnnnnnccc]dddd4444eee	chr12:132403059-132403293(+)$1	234	45	80	12.7959
ccc####ccc[dddd[aooooooa]dddd22ccc2	chr6:34857006-34857331(+)$1	325	40	75	9.7349
==========[ddddnnnnndddd333========	chr11:557749-558004(+)$1	255	189	224	14.9546
eeeee[ffffffcccmmmmccc]ffffff]eeeee	chr22:50016963-50017204(-)$1	241	95	130	9.7116
d[eeeee[ccc!!ccclllccc22ccceeeeeddd	chr19:4037226-4037475(+)$1	249	181	216	11.8487
"ggggggg!!a[ddddmmmmdddd]a4444ggggg	chr9:139250028-139250304(+)$1	276	79	114	11.8185
ffff[eeeee"""bbnnnnnbb333eeeeefffff	chr19:2425958-2426272(-)$1	314	171	206	10.5864
!!eeeee[bb"""bbnnnnnbb333bb]eeeee]f	chr5:138629678-138629929(+)$1	251	96	131	12.8564
b!!eeeee[a[bb[annnnna]bb]aeeeee22bb	chr16:88722384-88722614(-)$1	230	21	56	11.3355
=====[a[a[eeeeemmmmeeeee]a]a22=====	chr10:72503652-72503958(+)$1	306	156	191	10.5899
eeeeeccc[a[a[bblllbb]a]a]ccc]eeeee]	chr12:132402869-132403140(+)$1	271	118	153	11.6303
ddd####ccc[cccrrrrrrrrrcccccc4444dd	chr22:50873278-50873543(+)$1	265	220	255	9.2659
iiiiiiii"""bbddddllldddd22bb22iiiii	chr16:1828219-1828486(-)$1	267	97	132	11.6241
eeeee####gggggggmmmmggggggg4444eeee	chr21:47612200-47612495(-)$1	295	28	63	10.9298
ee[a[cccbb[ddddnnnnndddd]bb4444ccc]	chr19:47778061-47778339(+)$1	278	85	120	13.1886
========gggggggnnnnnggggggg333=====	chr16:89367079-89367343(-)$1	264	169	204	13.2592
d"""ddddddddddddllldddd333dddd333dd	chr9:139904818-139905104(-)$1	286	109	144	10.8485
e[eeeee"""bb!!ccclllccc333bb]eeeee]	chr6:3259324-3259594(+)$1	270	4	39	13.1292
deeeee!!gggggggnnnnnggggggg]eeeeeee	chr9:100774602-100774807(+)$1	205	83	118	12.9273
gggg!!ccc[ddddoooooodddd]cccggggggg	chr7:100174871-100175080(-)$1	209	52	87	12.5909
bbeeeeeccc[ddddnnnnndddd]ccc]eeeeeB	chr14:31495101-31495352(-)$1	251	90	125	13.3889
"eeeeedddd[cccmmmmcccdddd4444eeeee3	chr11:66392569-66392798(+)$1	229	74	109	10.5052
$$$$$eeeee[cccnnnnnccc]eeeee333dddd	chr16:725959-726250(+)$1	291	90	125	9.9341
cccbb!!ccc[cccooooooccc]ccc22bb]ccc	chr16:28878125-28878389(+)$1	264	74	109	10.7347
ddd[a"""ddddbbccclllccc333bb]dddd33	chr7:77166748-77166983(+)$1	235	117	152	10.7846
eeeee[ggggggg[ammmma]ggggggg22eeeee	chr17:46137197-46137505(+)$1	308	268	303	11.2169
!ffffff[bb[dddd[allla]ddddbbffffff2	chr9:139904712-139904986(-)$1	274	221	256	9.5449
d[dddd[bb"""cccooooooccc]bb]ddddddd	chr17:80016442-80016717(-)$1	275	187	222	11.1046
========"""cccooooooccc4444========	chr7:100171716-100171993(-)$1	277	234	269	13.7235
e####dddda[ddddmmmmdddd22a]dddd4444	chr19:1104611-1104910(+)$1	299	210	245	10.3122
!!ggggggg"""ddddlllddddggggggg22ddd	chr19:5719961-5720213(-)$1	252	48	83	11.7180
e[eeeee[a[bbeeeeellleeeee]bb]aeeeee	chr22:51020657-51020956(-)$1	299	121	156	10.7016
eee[eeeee[cccddddllldddd]ccc]eeeeee	chrX:48814204-48814457(-)$1	253	30	65	12.7131
!!ddddccc!!ddddllldddd333ccc]dddd]e	chr22:19711777-19712001(+)$1	224	52	87	12.0518
gggggg[a"""bb[annnnna]bb333a]gggggg	chr8:145693808-145694078(+)$1	270	14	49	12.9287
%%ccc[ccc"""cccnnnnnccccccccciiiiii	chr1:19415162-19415400(-)$1	238	39	74	11.8975
!eeeee$$$$$ddddnnnnndddd22eeeee22a:	chr17:4575315-4575587(-)$1	272	166	201	11.6201
gg[ggggggg[ddddllldddd22ggggggg333g	chr16:845040-845284(+)$1	244	83	118	11.2278
c!!gggggggbb[bbnnnnnbb22bb]ggggggg3	chr17:46131916-46132230(+)$1	314	208	243	10.6454
eeeee"""gggggggooooooggggggg]eeeeed	chr12:132401763-132402074(+)$1	311	143	178	12.4276

#otherMatches

#Seq PSSM
CCGGCCUCCGAGGGAGCGGGUCCCGCGGCAGGCCC	chr14:31495152-31495415(-)$1	263	153	188	15.1305
UUGCUCGAGGCCCAUCUCUAGGUGAGGCCCUCAAG	chr11:6566360-6566632(+)$1	272	220	255	10.1177
CGUCGGCACAGUGCCAGCUGGGGCUCUGGACAGAG	chr9:140323182-140323436(+)$1	254	167	202	11.3052
UAGGUUUCUCUGGCAGGGGGUGCAGAUGAUGCCUG	chr3:9711015-9711275(+)$1	260	84	119	10.8509
UGAGACCCAGGCUCCACCAAGAAGCUAGGUGGUUU	chr22:22277411-22277647(-)$1	236	155	190	12.2737
CCCCAGCCCCUGAGCUCCCUGCUCCAGGACACGGC	chr12:132403059-132403293(+)$1	234	45	80	12.7959
GGGAAAAGGCAGGGAGGGGGUGGUGUCCCCAGCCG	chr6:34857006-34857331(+)$1	325	40	75	9.7349
AGCUGCAGGAGGCAGGACUUCUGCAAGUUCUGCAG	chr11:557749-558004(+)$1	255	189	224	14.9546
gggcugggguggcuccucagagauugcccaaguCC	chr22:50016963-50017204(-)$1	241	95	130	9.7116
CGACGAGAUCGAGUACCUGGUGGACGGCUCGUGGU	chr19:4037226-4037475(+)$1	249	181	216	11.8487
AGCUUUGGCUGCGGUGACCCCACUCCCUCCCCAGA	chr9:139250028-139250304(+)$1	276	79	114	11.8185
GCAGUCACGUGGUGGUCACUCCUGGAUGUGCUGUC	chr19:2425958-2426272(-)$1	314	171	206	10.5864
AUUUUGGGUGAAGAGGUGCGCUGACCGGCCGAGCU	chr5:138629678-138629929(+)$1	251	96	131	12.8564
CAGGCCGACGGGAAGGACAGCAUCGCUCGGCAAGU	chr16:88722384-88722614(-)$1	230	21	56	11.3355
CCUCUGGCCUCAGCCUGUCGGCUGUGACAAGGAGG	chr10:72503652-72503958(+)$1	306	156	191	10.5899
GGGGCCACGGUGUCUGCUGGUCCUGGUGUGCCCCU	chr12:132402869-132403140(+)$1	271	118	153	11.6303
AGGUCAUCCGAGGUGAGCCCCCAACCCGGUCAUCC	chr22:50873278-50873543(+)$1	265	220	255	9.2659
CUGGGGGUGGGCAGGGCAGAGCCCCAUGGAGCUCU	chr16:1828219-1828486(-)$1	267	97	132	11.6241
auguacacaugcacaggcaccugugcacacauaca	chr21:47612200-47612495(-)$1	295	28	63	10.9298
CUGCGGCGCGGAGCCGAGUGGGCUGCGGGGAUGCG	chr19:47778061-47778339(+)$1	278	85	120	13.1886
CCAGGCACAUGCUGGUUCCUUCAGCGUUAGGUGCU	chr16:89367079-89367343(-)$1	264	169	204	13.2592
UGGAGCCUGGGUGGGCAGGGCCCUGAGCUCUGGGG	chr9:139904818-139905104(-)$1	286	109	144	10.8485
CUGGUCCACUUCCACGUCAUGCGGCUGACGGACUC	chr6:3259324-3259594(+)$1	270	4	39	13.1292
UGUUUGCUAUUCUUUAGGAAGAAGAAUUUGGACUU	chr9:100774602-100774807(+)$1	205	83	118	12.9273
UGUCUUGGUCCCUCAGGCGGGAGGAGCCGGCAGGG	chr7:100174871-100175080(-)$1	209	52	87	12.5909
CCGGCCUCCGAGGGAGCGGGUCCCGCGGCAGGCCC	chr14:31495101-31495352(-)$1	251	90	125	13.3889
GUGGCACAGCCAGCCACAGCUGCUGCCUAUGCCAG	chr11:66392569-66392798(+)$1	229	74	109	10.5052
gagggagggcgggCAGCUGGCUGGUCUUGGACCUU	chr16:725959-726250(+)$1	291	90	125	9.9341
CCCCUGACCCAGCCGGAGUGGGCCGGGGAGGAGGG	chr16:28878125-28878389(+)$1	264	74	109	10.7347
GGAGCAAGUGGAGAUCCUGAGGAAAUUCAUCCAGA	chr7:77166748-77166983(+)$1	235	117	152	10.7846
GCCAGGAUUCCAGGCAGCAGGUUGGAGUGACUGGU	chr17:46137197-46137505(+)$1	308	268	303	11.2169
UGCGUCCUGGCGAGUGCUUCGGGCUCCUGGGCGUC	chr9:139904712-139904986(-)$1	274	221	256	9.5449
CAUGGAUGCCUCAGGACGGCCCCUUGCUUCCAGCC	chr17:80016442-80016717(-)$1	275	187	222	11.1046
CUUGGCCUGCCGGCCUGGCUGCCUCUGGGGUCGAG	chr7:100171716-100171993(-)$1	277	234	269	13.7235
GGAAGGCCCCAGCGUGCAGGCGCAGGAGGGCGCGG	chr19:1104611-1104910(+)$1	299	210	245	10.3122
GAGCCGCCAGUAUGGCCGGGCUAUGGCGGCGAGCA	chr19:5719961-5720213(-)$1	252	48	83	11.7180
ggcAGGUAGGGCCGGCCGCGGGCUGAGCGCGCCUG	chr22:51020657-51020956(-)$1	299	121	156	10.7016
GCCGUAGGCGUGGGCGGCUGCUGCUCCGGGCCUGG	chrX:48814204-48814457(-)$1	253	30	65	12.7131
UUGCGCUGCUGGGCCUUGGGCUGCUGCACGCGUUG	chr22:19711777-19712001(+)$1	224	52	87	12.0518
GGUGAGGCGGGCUGGGGUUUUGGGAGGGGCUUAUC	chr8:145693808-145694078(+)$1	270	14	49	12.9287
CCCUGACGUAAACAAGAAGAUUGACGCAGCCCGCA	chr1:19415162-19415400(-)$1	238	39	74	11.8975
agaaCUGGAAGAGGUGGAAGACCUGGAGUUUGGCA	chr17:4575315-4575587(-)$1	272	166	201	11.6201
GCCUGCAGGGCUUGUUUGACAACUUCCUGCGUCUG	chr16:845040-845284(+)$1	244	83	118	11.2278
UGAGCUCAGGGUGGGGGCAGCUGGGCGCCUGAGUG	chr17:46131916-46132230(+)$1	314	208	243	10.6454
GGGGUCGGCGGGAGUCAGGAUGCUCCUGAGCCCUU	chr12:132401763-132402074(+)$1	311	143	178	12.4276

#DB
(.((((((((.((((.....)))).))).))))).	chr14:31495152-31495415(-)$1	1	153	188	15.1305
(((((.((((((((((....)))).)).)))).))	chr11:6566360-6566632(+)$1	1	220	255	10.1177
(.((.(..(((.(((......))).)))..).)).	chr9:140323182-140323436(+)$1	1	167	202	11.3052
(((((.((((((.((.....)))))).)).)))))	chr3:9711015-9711275(+)$1	1	84	119	10.8509
((((((((.((((.(.....).))))..).)))))	chr22:22277411-22277647(-)$1	1	155	190	12.2737
(..((((((((((((.....))).))))....)))	chr12:132403059-132403293(+)$1	1	45	80	12.7959
(((....(((.((((.(......).))))..))).	chr6:34857006-34857331(+)$1	1	40	75	9.7349
((((((((((.((((.....))))...))))))))	chr11:557749-558004(+)$1	1	189	224	14.9546
(((((.(((((((((....))).)))))).)))))	chr22:50016963-50017204(-)$1	1	95	130	9.7116
(.(((((.(((..(((...)))..)))))))))))	chr19:4037226-4037475(+)$1	1	181	216	11.8487
.(((((((..(.((((....)))).)....)))))	chr9:139250028-139250304(+)$1	1	79	114	11.8185
((((.(((((...((.....))...))))))))))	chr19:2425958-2426272(-)$1	1	171	206	10.5864
..(((((.((...((.....))...)).))))).)	chr5:138629678-138629929(+)$1	1	96	131	12.8564
(..(((((.(.((.(.....).)).))))))..))	chr16:88722384-88722614(-)$1	1	21	56	11.3355
(((((.(.(.(((((....))))).).)..)))))	chr10:72503652-72503958(+)$1	1	156	191	10.5899
((((((((.(.(.((...)).).).))).))))).	chr12:132402869-132403140(+)$1	1	118	153	11.6303
(((....(((.(((.........))))))....))	chr22:50873278-50873543(+)$1	1	220	255	9.2659
((((((((...((((((...))))..))..)))))	chr16:1828219-1828486(-)$1	1	97	132	11.6241
(((((....(((((((....)))))))....))))	chr21:47612200-47612495(-)$1	1	28	63	10.9298
((.(.(((((.((((.....)))).))....))).	chr19:47778061-47778339(+)$1	1	85	120	13.1886
(((((((((((((((.....)))))))...)))))	chr16:89367079-89367343(-)$1	1	169	204	13.2592
(...((((((((((((...))))...))))...))	chr9:139904818-139905104(-)$1	1	109	144	10.8485
(.(((((...((..(((...)))...)).))))).	chr6:3259324-3259594(+)$1	1	4	39	13.1292
)(((((..(((((((.....))))))).)))))((	chr9:100774602-100774807(+)$1	1	83	118	12.9273
((((..(((.((((......)))).))))))))))	chr7:100174871-100175080(-)$1	1	52	87	12.5909
))((((((((.((((.....)))).))).))))))	chr14:31495101-31495352(-)$1	1	90	125	13.3889
.(((((((((.(((....)))))))....))))).	chr11:66392569-66392798(+)$1	1	74	109	10.5052
.....(((((.(((.....))).)))))...))))	chr16:725959-726250(+)$1	1	90	125	9.9341
(((((..(((.(((......))).)))..)).)))	chr16:28878125-28878389(+)$1	1	74	109	10.7347
(((.(...(((((((((...)))...)).))))..	chr7:77166748-77166983(+)$1	1	117	152	10.7846
(((((.(((((((.(....).)))))))..)))))	chr17:46137197-46137505(+)$1	1	268	303	11.2169
.((((((.((.((((.(...).)))))))))))).	chr9:139904712-139904986(-)$1	1	221	256	9.5449
(.((((.((...(((......))).)).)))))))	chr17:80016442-80016717(-)$1	1	187	222	11.1046
((((((((...(((......)))....))))))))	chr7:100171716-100171993(-)$1	1	234	269	13.7235
(....(((((.((((....))))..).))))....	chr19:1104611-1104910(+)$1	1	210	245	10.3122
..(((((((...((((...)))))))))))..)))	chr19:5719961-5720213(-)$1	1	48	83	11.7180
(.(((((.(.(((((((...))))).)).))))))	chr22:51020657-51020956(-)$1	1	121	156	10.7016
(((.(((((.(((((((...)))).))).))))))	chrX:48814204-48814457(-)$1	1	30	65	12.7131
..(((((((..((((...))))...))).)))).)	chr22:19711777-19712001(+)$1	1	52	87	12.0518
((((((.(...((.(.....).))...).))))))	chr8:145693808-145694078(+)$1	1	14	49	12.9287
..(((.(((...(((.....)))))))))))))))	chr1:19415162-19415400(-)$1	1	39	74	11.8975
.(((((.....((((.....))))..)))))..).	chr17:4575315-4575587(-)$1	1	166	201	11.6201
((.(((((((.((((...))))..)))))))...)	chr16:845040-845284(+)$1	1	83	118	11.2278
(..(((((((((.((.....))..)).))))))).	chr17:46131916-46132230(+)$1	1	208	243	10.6454
(((((...(((((((......))))))).))))))	chr12:132401763-132402074(+)$1	1	143	178	12.4276

#PSSM
e : 0.26	d : 0.15	! : 0.11	c : 0.08	g : 0.08	= : 0.08	b : 0.06	" : 0.04	f : 0.02	i : 0.02	$ : 0.02	% : 0.02	
e : 0.26	[ : 0.13	! : 0.13	= : 0.08	g : 0.08	d : 0.06	c : 0.04	f : 0.04	i : 0.02	" : 0.02	b : 0.02	$ : 0.02	# : 0.02	% : 0.02	
e : 0.39	= : 0.08	g : 0.08	d : 0.08	! : 0.06	c : 0.06	f : 0.04	[ : 0.04	b : 0.02	i : 0.02	" : 0.02	$ : 0.02	# : 0.02	
e : 0.42	g : 0.13	= : 0.08	# : 0.06	b : 0.04	f : 0.04	[ : 0.04	d : 0.04	i : 0.02	a : 0.02	" : 0.02	$ : 0.02	c : 0.02	
e : 0.44	g : 0.11	= : 0.08	[ : 0.06	# : 0.06	d : 0.06	i : 0.02	! : 0.02	$ : 0.02	b : 0.02	a : 0.02	f : 0.02	c : 0.02	
e : 0.33	[ : 0.13	g : 0.11	d : 0.08	# : 0.06	= : 0.06	c : 0.04	! : 0.04	" : 0.04	a : 0.02	i : 0.02	f : 0.02	
e : 0.26	g : 0.11	c : 0.11	d : 0.08	! : 0.06	# : 0.06	= : 0.06	f : 0.04	" : 0.04	[ : 0.04	b : 0.02	a : 0.02	i : 0.02	$ : 0.02	
c : 0.22	e : 0.11	[ : 0.11	g : 0.11	d : 0.08	= : 0.06	" : 0.06	! : 0.04	b : 0.04	a : 0.04	f : 0.02	i : 0.02	# : 0.02	$ : 0.02	
c : 0.22	d : 0.15	g : 0.15	b : 0.08	" : 0.08	[ : 0.06	e : 0.06	a : 0.04	= : 0.02	f : 0.02	! : 0.02	# : 0.02	$ : 0.02	
c : 0.15	d : 0.15	" : 0.15	g : 0.15	[ : 0.08	b : 0.06	a : 0.06	! : 0.04	e : 0.04	= : 0.02	f : 0.02	$ : 0.02	
[ : 0.31	" : 0.17	d : 0.13	g : 0.11	b : 0.08	c : 0.06	f : 0.02	a : 0.02	e : 0.02	! : 0.02	$ : 0.02	
d : 0.35	b : 0.15	c : 0.13	" : 0.11	g : 0.11	[ : 0.04	f : 0.02	! : 0.02	e : 0.02	a : 0.02	
d : 0.35	c : 0.24	g : 0.11	b : 0.08	[ : 0.06	! : 0.04	" : 0.04	e : 0.04	
d : 0.37	c : 0.24	b : 0.13	[ : 0.08	g : 0.08	e : 0.04	! : 0.02	
d : 0.35	c : 0.17	b : 0.11	a : 0.08	g : 0.08	o : 0.06	e : 0.04	r : 0.02	m : 0.02	n : 0.02	
n : 0.37	d : 0.13	o : 0.13	m : 0.11	c : 0.06	l : 0.06	[ : 0.04	r : 0.02	g : 0.02	e : 0.02	
n : 0.37	m : 0.17	o : 0.13	l : 0.13	a : 0.04	d : 0.04	c : 0.04	r : 0.02	e : 0.02	
n : 0.37	l : 0.26	m : 0.17	o : 0.15	r : 0.02	
n : 0.37	l : 0.20	m : 0.15	o : 0.15	d : 0.04	b : 0.02	r : 0.02	c : 0.02	
n : 0.35	o : 0.15	l : 0.13	d : 0.11	c : 0.08	m : 0.06	e : 0.02	b : 0.02	r : 0.02	a : 0.02	
d : 0.33	c : 0.22	o : 0.08	b : 0.08	a : 0.08	g : 0.06	e : 0.04	] : 0.04	r : 0.02	
d : 0.35	c : 0.24	g : 0.11	b : 0.08	] : 0.08	e : 0.04	o : 0.02	a : 0.02	r : 0.02	
d : 0.37	c : 0.17	g : 0.11	] : 0.06	2 : 0.06	3 : 0.06	b : 0.04	e : 0.04	o : 0.02	r : 0.02	
d : 0.31	3 : 0.13	g : 0.13	c : 0.08	2 : 0.08	e : 0.06	] : 0.04	a : 0.04	b : 0.04	f : 0.02	4 : 0.02	
] : 0.28	3 : 0.17	g : 0.15	d : 0.11	c : 0.08	2 : 0.06	e : 0.04	f : 0.02	4 : 0.02	b : 0.02	
c : 0.24	g : 0.15	b : 0.11	d : 0.11	3 : 0.11	a : 0.08	e : 0.04	2 : 0.04	4 : 0.04	f : 0.02	] : 0.02	
c : 0.24	b : 0.20	g : 0.15	] : 0.08	e : 0.08	d : 0.06	4 : 0.06	3 : 0.04	2 : 0.02	f : 0.02	
c : 0.20	b : 0.13	e : 0.11	g : 0.11	] : 0.08	d : 0.08	4 : 0.08	2 : 0.04	= : 0.04	a : 0.04	f : 0.02	3 : 0.02	
] : 0.22	e : 0.13	d : 0.11	2 : 0.11	4 : 0.11	g : 0.08	= : 0.04	f : 0.04	c : 0.04	3 : 0.04	b : 0.02	a : 0.02	
e : 0.28	d : 0.13	2 : 0.11	4 : 0.11	g : 0.11	] : 0.06	= : 0.04	3 : 0.04	b : 0.02	f : 0.02	a : 0.02	i : 0.02	
e : 0.37	d : 0.11	g : 0.11	4 : 0.08	= : 0.08	2 : 0.04	f : 0.04	i : 0.04	3 : 0.04	a : 0.02	b : 0.02	
e : 0.35	d : 0.11	= : 0.08	g : 0.08	4 : 0.06	2 : 0.06	] : 0.04	c : 0.04	f : 0.04	i : 0.04	3 : 0.04	
e : 0.35	d : 0.13	= : 0.08	g : 0.08	c : 0.06	f : 0.04	2 : 0.04	4 : 0.04	i : 0.04	3 : 0.04	] : 0.02	b : 0.02	
e : 0.35	d : 0.13	= : 0.08	g : 0.08	c : 0.06	b : 0.04	f : 0.04	] : 0.04	i : 0.04	3 : 0.04	4 : 0.02	a : 0.02	
e : 0.24	d : 0.15	] : 0.08	= : 0.08	g : 0.08	2 : 0.06	3 : 0.06	f : 0.04	i : 0.04	b : 0.02	B : 0.02	c : 0.02	4 : 0.02	: : 0.02	

#score	524.4878098153355
#seq	45
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_CDS_m2_run1.txt

#BEAR
ee[cccmmmmccc4444e	chr11:5290714-5290989(-)$1	275	160	178	7.9556
[cccbbmmmmbb]ccc]c	chr7:5569062-5569360(-)$1	298	19	37	10.9551
:bb[bbmmmmbb]bb:cc	chr1:35658087-35658361(-)$1	274	6	24	8.4796
ccc[bbmmmmbb22ccc]	chr2:55276819-55277078(-)$1	259	32	50	11.2209
ccc[bbmmmmbb]ccc22	chr16:204184-204454(+)$1	270	187	205	11.8785
bb[cccmmmmccc]bb22	chr16:30078495-30078788(+)$1	293	159	177	7.5358
ffffffmmmmffffff]c	chr2:55277114-55277355(-)$1	241	91	109	7.2057
eee[bbmmmmbbeeeee:	chr7:5568726-5568985(-)$1	259	56	74	10.1351
ddd[bbmmmmbb]dddd:	chr7:75932086-75932314(+)$1	228	145	163	11.2026
ddddbbmmmmbb]dddd]	chr6:34212678-34212944(+)$1	266	33	51	11.3627
ccc[bbmmmmbb]cccCC	chr19:1241671-1242017(+)$1	346	4	22	9.7936
ddd[bbmmmmbb]dddd]	chr22:21272027-21272359(+)$1	332	74	92	12.0816
d"""bbmmmmbb333ddd	chr16:30081060-30081278(+)$1	218	162	180	11.0646
dd!!bbmmmmbb]dddde	chr1:35658199-35658561(-)$1	362	251	269	11.8258
eee[bbmmmmbb]eeeee	chr7:75931979-75932258(+)$1	279	18	36	11.4354
bb[cccmmmmccc]bb22	chr16:30078454-30078695(+)$1	241	200	218	7.5358
fff[bbmmmmbbffffff	chr1:8925282-8925572(-)$1	290	69	87	10.2445
fff[bbmmmmbb]fffff	chr11:5290789-5291008(-)$1	219	141	159	10.8437
ddd[bbmmmmbb]ddddh	chr16:72821494-72821743(-)$1	249	85	103	11.6192
ffffffmmmmffffff22	chr16:88870315-88870551(+)$1	236	121	139	7.4836
ee!!bbmmmmbb]eeeee	chr7:75677322-75677621(+)$1	299	268	286	11.4763
ddddbbmmmmbb]dddd]	chr6:34212609-34212864(+)$1	255	102	120	11.3627
e[a[bbmmmmbb]a]eee	chr16:204265-204551(+)$1	286	240	258	11.2616
ffffffmmmmffffff22	chr16:88870214-88870492(+)$1	278	222	240	7.4836
dd[cccmmmmccc]dddd	chr19:3985275-3985512(-)$1	237	193	211	8.3504
dddd[ammmma]dddd22	chr19:49611208-49611487(+)$1	279	131	149	7.7151
eee[bbmmmmbbeeeee:	chr7:5568823-5569054(-)$1	231	125	143	10.1351
dd!!bbmmmmbb22dddd	chr17:80049218-80049476(-)$1	258	19	37	11.2529

#otherMatches

#Seq PSSM
GCAACCCCAAGGUCAAGG	chr11:5290714-5290989(-)$1	275	160	178	7.9556
AGGGCGGGGGCGACCUCG	chr7:5569062-5569360(-)$1	298	19	37	10.9551
cgccgccaccgccgcAGG	chr1:35658087-35658361(-)$1	274	6	24	8.4796
UCCAAGCUCCCUGAGGAC	chr2:55276819-55277078(-)$1	259	32	50	11.2209
CUCUGUCCUGACCGAGAA	chr16:204184-204454(+)$1	270	187	205	11.8785
GCAAGGGCAUCCUGGCUG	chr16:30078495-30078788(+)$1	293	159	177	7.5358
AGCCCGCCGCCGGGCUGU	chr2:55277114-55277355(-)$1	241	91	109	7.2057
GUCACCAACUGGGACGAC	chr7:5568726-5568985(-)$1	259	56	74	10.1351
UGGCCGCGCCCGCCUACA	chr7:75932086-75932314(+)$1	228	145	163	11.2026
UGGACAGCUUUGCUCCGC	chr6:34212678-34212944(+)$1	266	33	51	11.3627
GCGUCGUCAACGUCGCGU	chr19:1241671-1242017(+)$1	346	4	22	9.7936
CGCUCCUCGAGGUGUGCG	chr22:21272027-21272359(+)$1	332	74	92	12.0816
CCCUGCUGAAGCCCUGGG	chr16:30081060-30081278(+)$1	218	162	180	11.0646
GACCCGGCCCCGCUCCCG	chr1:35658199-35658561(-)$1	362	251	269	11.8258
CUGAGCAGACGUCCAGAG	chr7:75931979-75932258(+)$1	279	18	36	11.4354
GCAAGGGCAUCCUGGCUG	chr16:30078454-30078695(+)$1	241	200	218	7.5358
UACACUGAUAAGGUGGUC	chr1:8925282-8925572(-)$1	290	69	87	10.2445
CAGCUUUGGAAACCUGUC	chr11:5290789-5291008(-)$1	219	141	159	10.8437
Ccggcggcggcggcggug	chr16:72821494-72821743(-)$1	249	85	103	11.6192
CCGCAGGAGACUGCGGCU	chr16:88870315-88870551(+)$1	236	121	139	7.4836
GGCCACGUGCGUCCCCGG	chr7:75677322-75677621(+)$1	299	268	286	11.4763
UGGACAGCUUUGCUCCGC	chr6:34212609-34212864(+)$1	255	102	120	11.3627
GCGUCCACCUGGUCUCUG	chr16:204265-204551(+)$1	286	240	258	11.2616
CCGCAGGAGACUGCGGCU	chr16:88870214-88870492(+)$1	278	222	240	7.4836
UACGCUGCCUAGCCUGGG	chr19:3985275-3985512(-)$1	237	193	211	8.3504
GCCCUCCGAGGCGGGUGA	chr19:49611208-49611487(+)$1	279	131	149	7.7151
GUCACCAACUGGGACGAC	chr7:5568823-5569054(-)$1	231	125	143	10.1351
ACCAGCCCCUGCCCGUCC	chr17:80049218-80049476(-)$1	258	19	37	11.2529

#DB
((.(((....)))....)	chr11:5290714-5290989(-)$1	1	160	178	7.9556
.(((((....)).))).)	chr7:5569062-5569360(-)$1	1	19	37	10.9551
.((.((....)).)).((	chr1:35658087-35658361(-)$1	1	6	24	8.4796
(((.((....))..))).	chr2:55276819-55277078(-)$1	1	32	50	11.2209
(((.((....)).)))..	chr16:204184-204454(+)$1	1	187	205	11.8785
((.(((....))).))..	chr16:30078495-30078788(+)$1	1	159	177	7.5358
((((((....)))))).)	chr2:55277114-55277355(-)$1	1	91	109	7.2057
(((.((....))))))).	chr7:5568726-5568985(-)$1	1	56	74	10.1351
(((.((....)).)))).	chr7:75932086-75932314(+)$1	1	145	163	11.2026
((((((....)).)))).	chr6:34212678-34212944(+)$1	1	33	51	11.3627
(((.((....)).)))((	chr19:1241671-1242017(+)$1	1	4	22	9.7936
(((.((....)).)))).	chr22:21272027-21272359(+)$1	1	74	92	12.0816
(...((....))...)))	chr16:30081060-30081278(+)$1	1	162	180	11.0646
((..((....)).))))(	chr1:35658199-35658561(-)$1	1	251	269	11.8258
(((.((....)).)))))	chr7:75931979-75932258(+)$1	1	18	36	11.4354
((.(((....))).))..	chr16:30078454-30078695(+)$1	1	200	218	7.5358
(((.((....))))))))	chr1:8925282-8925572(-)$1	1	69	87	10.2445
(((.((....)).)))))	chr11:5290789-5291008(-)$1	1	141	159	10.8437
(((.((....)).))))(	chr16:72821494-72821743(-)$1	1	85	103	11.6192
((((((....))))))..	chr16:88870315-88870551(+)$1	1	121	139	7.4836
((..((....)).)))))	chr7:75677322-75677621(+)$1	1	268	286	11.4763
((((((....)).)))).	chr6:34212609-34212864(+)$1	1	102	120	11.3627
(.(.((....)).).)))	chr16:204265-204551(+)$1	1	240	258	11.2616
((((((....))))))..	chr16:88870214-88870492(+)$1	1	222	240	7.4836
((.(((....))).))))	chr19:3985275-3985512(-)$1	1	193	211	8.3504
((((.(....).))))..	chr19:49611208-49611487(+)$1	1	131	149	7.7151
(((.((....))))))).	chr7:5568823-5569054(-)$1	1	125	143	10.1351
((..((....))..))))	chr17:80049218-80049476(-)$1	1	19	37	11.2529

#PSSM
d : 0.35	e : 0.21	f : 0.17	c : 0.10	b : 0.07	[ : 0.03	: : 0.03	
d : 0.32	e : 0.17	f : 0.17	c : 0.14	b : 0.10	" : 0.03	[ : 0.03	
d : 0.21	f : 0.17	[ : 0.14	c : 0.14	e : 0.10	! : 0.10	b : 0.03	" : 0.03	a : 0.03	
[ : 0.46	c : 0.17	f : 0.10	d : 0.10	! : 0.10	" : 0.03	
b : 0.71	c : 0.14	f : 0.10	[ : 0.03	
b : 0.71	c : 0.14	f : 0.10	a : 0.03	
m : 0.99	
m : 0.99	
m : 0.99	
m : 0.99	
b : 0.71	c : 0.14	f : 0.10	a : 0.03	
b : 0.71	c : 0.14	f : 0.10	] : 0.03	
] : 0.49	c : 0.14	f : 0.14	2 : 0.07	e : 0.07	3 : 0.03	d : 0.03	
d : 0.24	f : 0.17	e : 0.14	c : 0.10	] : 0.10	2 : 0.07	4 : 0.03	b : 0.03	3 : 0.03	a : 0.03	
d : 0.32	f : 0.17	c : 0.14	e : 0.14	b : 0.10	4 : 0.03	3 : 0.03	] : 0.03	
d : 0.35	f : 0.17	e : 0.17	c : 0.14	b : 0.07	4 : 0.03	: : 0.03	
d : 0.32	2 : 0.21	e : 0.17	] : 0.07	c : 0.07	f : 0.07	4 : 0.03	C : 0.03	
2 : 0.21	e : 0.17	] : 0.14	c : 0.10	: : 0.10	d : 0.10	f : 0.07	C : 0.03	h : 0.03	

#score	280.89816583868924
#seq	28
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_transcript_m2_run2.txt

#BEAR
ggggggg[eeeeeooooooeeeeeggggggg:	chr9:136627530-136627802(-)$1	272	147	179	12.0695
[dddd####ccc!!aooooooa22ccc22ddd	chr18:76906413-76906635(+)$1	222	47	79	13.3358
dddggggggg[cccooooooccc]ggggggg:	chr6:131200381-131200639(-)$1	258	49	81	11.0750
cc!!dddd[ddddoooooodddd]dddd22cc	chr12:131522367-131522628(+)$1	261	166	198	16.3635
eee"""bb!!cccooooooccc22bb333eee	chr12:62997628-62997902(+)$1	274	210	242	13.2955
eee[ccc!!cccooooooccc4444ccc]eee	chr17:1464906-1465172(-)$1	266	105	137	13.9656
!dddddddd[aooooooa]dddd]dddd22cc	chr5:1065729-1065991(-)$1	262	119	151	12.7556
ddd!!bb!!eeeeellleeeee333bb22ddd	chr5:179230415-179230676(-)$1	261	167	199	11.0213
"eeeee"""ddddoooooodddd]eeeee333	chr9:97848101-97848370(+)$1	269	104	136	16.1950
eee[ccc!!ddddoooooodddd]ccc]eeee	chr17:36761411-36761659(-)$1	248	212	244	16.2099
ddddccc####cccmmmmccc333ccc22ddd	chr18:74135184-74135614(-)$1	430	8	40	11.2851
ddbbccc!!ddddnnnnndddd22ccc333bb	chr7:158343554-158343789(-)$1	235	2	34	11.7736
hhhhhhhh[ddddoooooodddd]hhhhhhhh	chr1:41222569-41222833(+)$1	264	100	132	12.6845
[a[dddd"""dddd[allla]dddd4444ddd	chr12:7037129-7037406(+)$1	277	87	119	11.4370
dddd[bb!!ddddooooooddddbbdddd22b	chr12:125270543-125270859(-)$1	316	220	252	13.9994
b[dddd[eeeeeooooooeeeee]ddddbb]d	chr1:3639301-3639596(+)$1	295	168	200	12.2861
!eeeee"""ddddmmmmdddd4444eeeee]d	chr12:133532140-133532439(-)$1	299	181	213	12.0278
cc!!dddd[ddddoooooodddd]dddd22cc	chr12:131522294-131522567(+)$1	273	239	271	16.3635
:dddd####ddddoooooodddd333dddd::	chr14:24901297-24901621(+)$1	324	215	247	13.6932
hhhhhhhh[ddddoooooodddd]hhhhhhhh	chr6:168226760-168227088(-)$1	328	219	251	12.6845
[ccceeeee!!bboooooobb]eeeee]ccc]	chr12:62997217-62997507(+)$1	290	190	222	11.1327
cceeeee!!ddddoooooodddd22eeeee]c	chr7:158334229-158334503(-)$1	274	88	120	16.1025
[eeeee####cccooooooccc22eeeeeddd	chr14:24901231-24901497(+)$1	266	110	142	14.7833
cc!!ccc####ddddmmmmdddd22ccc22cc	chr16:85680838-85681084(+)$1	246	132	164	11.9370
c[ccc[a!!ddddmmmmdddd22a]ccc]ccc	chr22:50355570-50355860(+)$1	290	26	58	11.2209
d"""dddd!!ddddmmmmdddd22dddd]ddd	chr7:158343719-158344029(-)$1	310	181	213	12.0946
dddd[dddd[ddddnnnnndddd]dddd]ddd	chr11:18034099-18034448(-)$1	349	168	200	11.5661
""dddd"""eeeeellleeeee333ddddddd	chr7:157658352-157658696(-)$1	344	106	138	12.0615
cc[ccc"""bb[aooooooa]bb22ccc]ccc	chr2:191513917-191514189(+)$1	272	122	154	13.3275
ddddddd!!ddddoooooodddd]dddd]ddd	chr7:150935657-150935886(+)$1	229	147	179	16.8943
ff[bb####ddddoooooodddd4444bbfff	chr22:42298033-42298326(+)$1	293	222	254	13.5530
$$$$$ccc!!cccooooooccc22ccc22ddd	chr14:24904393-24904676(+)$1	283	173	205	13.4292
eee[ccc!!ddddoooooodddd]ccc]eeee	chr17:36761344-36761611(-)$1	267	164	196	16.2099
cc[dddd!!ddddmmmmdddd4444dddd22c	chr22:42296607-42296904(+)$1	297	15	47	11.8973
ccc[a####eeeeemmmmeeeee333accc44	chr4:1804323-1804588(+)$1	265	141	173	10.7824
ffdddd####ccc[aooooooa]ccc333ddd	chr13:111314634-111314897(-)$1	263	203	235	12.6275
dddddddccc[ddddmmmmdddd]ccc]dddd	chr17:76124116-76124393(-)$1	277	125	157	10.5976
dd!!dddd!!cccooooooccc22dddd22dd	chr1:162562549-162562901(+)$1	352	81	113	15.1589
d[dddd[eeeeeooooooeeeee]dddd333d	chr2:219267121-219267386(+)$1	265	130	162	13.8654
eeeeeeeeee[a[aooooooa]aeeeee]eee	chr9:116971769-116972040(+)$1	271	110	142	11.6172
ccc[dddd[ddddoooooodddddddd22ccc	chr17:11985379-11985636(+)$1	257	120	152	15.3173
cceeeee:eeeeeooooooeeeeebb[iiiii	chr11:75047257-75047516(-)$1	259	99	131	11.5859
""eeeee!!ddddoooooodddd]eeeee]bb	chr2:3352956-3353208(-)$1	252	122	154	15.4293
feeeee!!eeeeeooooooeeeee]eeeee]f	chr6:5002183-5002432(-)$1	249	168	200	13.4847
:============oooooo============:	chr13:92003589-92003845(+)$1	256	1	33	11.2332
d[dddd[eeeeeooooooeeeee]dddd333d	chr2:219267048-219267321(+)$1	273	203	235	13.8654
!!eeeee[eeeee[aooooooa]eeeee]eee	chr14:105854492-105854755(+)$1	263	83	115	11.8094
hhhh[ccc[ddddoooooodddd333ccchhh	chr17:46114592-46114892(-)$1	300	24	56	14.4719
D:eeeee[eeeeeooooooeeeee333eeeee	chr3:52304397-52304701(-)$1	304	53	85	11.7633

#otherMatches

#Seq PSSM
CUUUGCGACCUGCGGCCCAGCAGGCGCGGAGG	chr9:136627530-136627802(-)$1	272	147	179	12.0695
GUCGGGGGAGCUGGCGGUGUGGAGAGUGACUG	chr18:76906413-76906635(+)$1	222	47	79	13.3358
CUCAGUAAUCUGACUAAUCUGUUUGGUUGCUU	chr6:131200381-131200639(-)$1	258	49	81	11.0750
ucacugcacuggggucucacucacugcaugga	chr12:131522367-131522628(+)$1	261	166	198	16.3635
ACUUCUUUCAGCAGUUAAAUGCCAAAUUUAGU	chr12:62997628-62997902(+)$1	274	210	242	13.2955
AGGGCCUGGCUGGGGAGACAGGUGAAGGGUCU	chr17:1464906-1465172(-)$1	266	105	137	13.9656
ACUGCCUGGCGUUGUGUCCCCAGAGCAGCCCU	chr5:1065729-1065991(-)$1	262	119	151	12.7556
GCUCUGAACCCAUUCCUGAUGGCUCUCUAGGC	chr5:179230415-179230676(-)$1	261	167	199	11.0213
UUGCAGUCCAGGCCUUCGCGUCUCCUGCGCCA	chr9:97848101-97848370(+)$1	269	104	136	16.1950
GGUGCACGGGCUAGGAUGGUGGUGGUGGGCCC	chr17:36761411-36761659(-)$1	248	212	244	16.2099
GCGUGUGUUUCGGGGGGACCCUUUCACCUGCG	chr18:74135184-74135614(-)$1	430	8	40	11.2851
gcccugcccugguguucugccacagcagcUGG	chr7:158343554-158343789(-)$1	235	2	34	11.7736
CCAGCUUUGUAAAUGUUACUUUGGGGAGUUGG	chr1:41222569-41222833(+)$1	264	100	132	12.6845
gggccgcggggccgggcggcgcggcgggggcg	chr12:7037129-7037406(+)$1	277	87	119	11.4370
AAUGAGACCUGGUACUUGCAucauccauucau	chr12:125270543-125270859(-)$1	316	220	252	13.9994
cacaggagugggcaccucucugcaccuggcau	chr1:3639301-3639596(+)$1	295	168	200	12.2861
UCACUGGAAAGCCUGCCGGCUGugacaguguu	chr12:133532140-133532439(-)$1	299	181	213	12.0278
ucacugcacuggggucucacucacugcaugga	chr12:131522294-131522567(+)$1	273	239	271	16.3635
AUGGGAAUGCCUCUCCUCCGAGGGUGCCCAGC	chr14:24901297-24901621(+)$1	324	215	247	13.6932
CGGUGCUGGAUCCAAAUGGGGGUGCAGUGCUG	chr6:168226760-168227088(-)$1	328	219	251	12.6845
GCGCCGGAGCCGCUUUGCUGCCCUCCGCGUGG	chr12:62997217-62997507(+)$1	290	190	222	11.1327
GCAAGUGUUUUAAUUUUCUUUAGUUCACUUAG	chr7:158334229-158334503(-)$1	274	88	120	16.1025
UGGGUGGAGGGGCAAGGGAGUCAGCACCCCUG	chr14:24901231-24901497(+)$1	266	110	142	14.7833
ucgugguggugguuguaaacagcgaaccuagg	chr16:85680838-85681084(+)$1	246	132	164	11.9370
CACGCGCUACCCUGGGGAGGGCUGAGCGAGGG	chr22:50355570-50355860(+)$1	290	26	58	11.2209
cacccugaucuuggaccuccagucucagagcu	chr7:158343719-158344029(-)$1	310	181	213	12.0946
GCGGGGUCAGGGCCGGAGGGGCUGUGGCGCCG	chr11:18034099-18034448(-)$1	349	168	200	11.5661
UCUGGGGCCUUGACCCUGUUAACCGUCCACCC	chr7:157658352-157658696(-)$1	344	106	138	12.0615
GCAGUCCUCGGGGAGAGCGCGCCAAGACCGCU	chr2:191513917-191514189(+)$1	272	122	154	13.3275
UCUGCCUCAGCCCCAGGAAGGGCAAGGCAAGA	chr7:150935657-150935886(+)$1	229	147	179	16.8943
GAGCCGGGUGGGCAGCCCAGCCCCAUAGGUCG	chr22:42298033-42298326(+)$1	293	222	254	13.5530
GGGUGUGUGGACUUUAUUUGGUAAAUAAAGGG	chr14:24904393-24904676(+)$1	283	173	205	13.4292
GGUGCACGGGCUAGGAUGGUGGUGGUGGGCCC	chr17:36761344-36761611(-)$1	267	164	196	16.2099
AGCAGCCCCCUUUCAAAAAAGUUACGGCUUAU	chr22:42296607-42296904(+)$1	297	15	47	11.8973
ACGUGCAUCCUGUGAAACCACAGCCACCGUGA	chr4:1804323-1804588(+)$1	265	141	173	10.7824
GGGGUUGCAUGACGCAGAAGGGGGUCCGAAGC	chr13:111314634-111314897(-)$1	263	203	235	12.6275
GGGUGGGGGUUCCUGGAAACGGGCGCCACCCA	chr17:76124116-76124393(-)$1	277	125	157	10.5976
AACUGGCAUCGUAGUUUAGUGCUCUGCCUUUU	chr1:162562549-162562901(+)$1	352	81	113	15.1589
ggugugagacuugucccaaagucacacagAAC	chr2:219267121-219267386(+)$1	265	130	162	13.8654
GGGUGGGCUGCGGCAGGUUGGGCCAGCCACAC	chr9:116971769-116972040(+)$1	271	110	142	11.6172
ACAAUACCUGGCAAGCUUAUGCUGGUACCUGU	chr17:11985379-11985636(+)$1	257	120	152	15.3173
UGGGGCCAUCUGCAGCUUGGCAGGGUGUGGGG	chr11:75047257-75047516(-)$1	259	99	131	11.5859
CUGGAGCAGGGCCGGUUAGGGCUGGUUCCCAC	chr2:3352956-3353208(-)$1	252	122	154	15.4293
AGGGCUGUUGUUUUGUUUCAAACAGGGCCUGU	chr6:5002183-5002432(-)$1	249	168	200	13.4847
UUGCAAUGCUGUGUUUCUGUAUGGUAUUGCAC	chr13:92003589-92003845(+)$1	256	1	33	11.2332
ggugugagacuugucccaaagucacacagAAC	chr2:219267048-219267321(+)$1	273	203	235	13.8654
CUGGGGAGGGUGGGUCUUGCCAGCCGCCGUCU	chr14:105854492-105854755(+)$1	263	83	115	11.8094
CGACCGGAGAGGAGGCCUGUCCUGAGUCCGUC	chr17:46114592-46114892(-)$1	300	24	56	14.4719
UUUGUGACUACUUUAGUUUAAGUAUUUUCAUA	chr3:52304397-52304701(-)$1	304	53	85	11.7633

#DB
(((((((.(((((......)))))))))))).	chr9:136627530-136627802(-)$1	1	147	179	12.0695
.((((....(((..(......)..)))..)))	chr18:76906413-76906635(+)$1	1	47	79	13.3358
)))(((((((.(((......))).))))))).	chr6:131200381-131200639(-)$1	1	49	81	11.0750
((..((((.((((......)))).))))..))	chr12:131522367-131522628(+)$1	1	166	198	16.3635
(((...((..(((......)))..))...)))	chr12:62997628-62997902(+)$1	1	210	242	13.2955
(((.(((..(((......)))....))).)))	chr17:1464906-1465172(-)$1	1	105	137	13.9656
.((((((((.(......).)))).))))..))	chr5:1065729-1065991(-)$1	1	119	151	12.7556
(((..((..(((((...)))))...))..)))	chr5:179230415-179230676(-)$1	1	167	199	11.0213
.(((((...((((......)))).)))))...	chr9:97848101-97848370(+)$1	1	104	136	16.1950
(((.(((..((((......)))).))).))))	chr17:36761411-36761659(-)$1	1	212	244	16.2099
(((((((....(((....)))...)))..)))	chr18:74135184-74135614(-)$1	1	8	40	11.2851
(((((((..((((.....))))..)))...))	chr7:158343554-158343789(-)$1	1	2	34	11.7736
((((((((.((((......)))).))))))))	chr1:41222569-41222833(+)$1	1	100	132	12.6845
.(.((((...((((.(...).))))....)))	chr12:7037129-7037406(+)$1	1	87	119	11.4370
((((.((..((((......))))))))))..)	chr12:125270543-125270859(-)$1	1	220	252	13.9994
(.((((.(((((......))))).)))))).)	chr1:3639301-3639596(+)$1	1	168	200	12.2861
.(((((...((((....))))....))))).)	chr12:133532140-133532439(-)$1	1	181	213	12.0278
((..((((.((((......)))).))))..))	chr12:131522294-131522567(+)$1	1	239	271	16.3635
.((((....((((......))))...))))..	chr14:24901297-24901621(+)$1	1	215	247	13.6932
((((((((.((((......)))).))))))))	chr6:168226760-168227088(-)$1	1	219	251	12.6845
.((((((((..((......)).))))).))).	chr12:62997217-62997507(+)$1	1	190	222	11.1327
(((((((..((((......))))..))))).)	chr7:158334229-158334503(-)$1	1	88	120	16.1025
.(((((....(((......)))..))))))))	chr14:24901231-24901497(+)$1	1	110	142	14.7833
((..(((....((((....))))..)))..))	chr16:85680838-85681084(+)$1	1	132	164	11.9370
(.(((.(..((((....))))..).))).)))	chr22:50355570-50355860(+)$1	1	26	58	11.2209
(...((((..((((....))))..)))).)))	chr7:158343719-158344029(-)$1	1	181	213	12.0946
((((.((((.((((.....)))).)))).)))	chr11:18034099-18034448(-)$1	1	168	200	11.5661
..((((...(((((...)))))...)))))))	chr7:157658352-157658696(-)$1	1	106	138	12.0615
((.(((...((.(......).))..))).)))	chr2:191513917-191514189(+)$1	1	122	154	13.3275
(((((((..((((......)))).)))).)))	chr7:150935657-150935886(+)$1	1	147	179	16.8943
((.((....((((......))))....)))))	chr22:42298033-42298326(+)$1	1	222	254	13.5530
.....(((..(((......)))..)))..)))	chr14:24904393-24904676(+)$1	1	173	205	13.4292
(((.(((..((((......)))).))).))))	chr17:36761344-36761611(-)$1	1	164	196	16.2099
((.((((..((((....))))....))))..)	chr22:42296607-42296904(+)$1	1	15	47	11.8973
(((.(....(((((....)))))...))))..	chr4:1804323-1804588(+)$1	1	141	173	10.7824
((((((....(((.(......).)))...)))	chr13:111314634-111314897(-)$1	1	203	235	12.6275
((((((((((.((((....)))).))).))))	chr17:76124116-76124393(-)$1	1	125	157	10.5976
((..((((..(((......)))..))))..))	chr1:162562549-162562901(+)$1	1	81	113	15.1589
(.((((.(((((......))))).))))...)	chr2:219267121-219267386(+)$1	1	130	162	13.8654
((((((((((.(.(......).)))))).)))	chr9:116971769-116972040(+)$1	1	110	142	11.6172
(((.((((.((((......))))))))..)))	chr17:11985379-11985636(+)$1	1	120	152	15.3173
))))))).(((((......)))))((.(((((	chr11:75047257-75047516(-)$1	1	99	131	11.5859
..(((((..((((......)))).))))).))	chr2:3352956-3353208(-)$1	1	122	154	15.4293
((((((..(((((......))))).))))).)	chr6:5002183-5002432(-)$1	1	168	200	13.4847
.((((((((((((......)))))))))))).	chr13:92003589-92003845(+)$1	1	1	33	11.2332
(.((((.(((((......))))).))))...)	chr2:219267048-219267321(+)$1	1	203	235	13.8654
..(((((.(((((.(......).))))).)))	chr14:105854492-105854755(+)$1	1	83	115	11.8094
((((.(((.((((......))))...))))))	chr17:46114592-46114892(-)$1	1	24	56	14.4719
(.(((((.(((((......)))))...)))))	chr3:52304397-52304701(-)$1	1	53	85	11.7633

#PSSM
d : 0.24	c : 0.20	e : 0.10	[ : 0.08	! : 0.06	" : 0.06	h : 0.06	f : 0.06	: : 0.04	g : 0.02	b : 0.02	$ : 0.02	D : 0.02	
d : 0.24	c : 0.20	e : 0.18	[ : 0.08	h : 0.06	" : 0.06	f : 0.04	g : 0.02	a : 0.02	$ : 0.02	= : 0.02	! : 0.02	: : 0.02	
d : 0.30	e : 0.28	! : 0.08	[ : 0.08	c : 0.08	h : 0.06	g : 0.02	b : 0.02	" : 0.02	$ : 0.02	= : 0.02	
d : 0.30	e : 0.20	! : 0.10	[ : 0.10	h : 0.06	c : 0.06	g : 0.04	" : 0.04	b : 0.04	$ : 0.02	= : 0.02	
d : 0.34	e : 0.22	c : 0.16	[ : 0.06	g : 0.04	h : 0.04	" : 0.02	! : 0.02	b : 0.02	$ : 0.02	a : 0.02	= : 0.02	
d : 0.32	e : 0.22	c : 0.18	# : 0.08	g : 0.04	b : 0.04	h : 0.04	" : 0.02	[ : 0.02	= : 0.02	
d : 0.22	c : 0.16	e : 0.14	# : 0.12	" : 0.08	b : 0.06	[ : 0.06	g : 0.04	h : 0.04	a : 0.02	! : 0.02	= : 0.02	
! : 0.24	# : 0.16	d : 0.14	" : 0.10	e : 0.10	[ : 0.06	c : 0.06	h : 0.04	g : 0.02	b : 0.02	: : 0.02	= : 0.02	
! : 0.30	e : 0.20	# : 0.16	[ : 0.12	" : 0.10	d : 0.04	g : 0.02	c : 0.02	= : 0.02	
d : 0.38	e : 0.24	! : 0.10	# : 0.08	c : 0.06	[ : 0.04	g : 0.02	" : 0.02	b : 0.02	= : 0.02	
d : 0.44	e : 0.22	c : 0.14	[ : 0.06	# : 0.04	a : 0.02	! : 0.02	b : 0.02	= : 0.02	
d : 0.48	e : 0.22	c : 0.18	o : 0.02	b : 0.02	[ : 0.02	a : 0.02	= : 0.02	
d : 0.48	e : 0.16	c : 0.14	o : 0.10	! : 0.02	b : 0.02	a : 0.02	[ : 0.02	= : 0.02	
o : 0.63	d : 0.10	e : 0.06	m : 0.06	c : 0.04	[ : 0.04	! : 0.02	n : 0.02	a : 0.02	
o : 0.67	m : 0.12	a : 0.06	l : 0.04	n : 0.04	d : 0.04	[ : 0.02	
o : 0.73	m : 0.16	l : 0.04	n : 0.04	a : 0.02	
o : 0.73	m : 0.16	l : 0.06	n : 0.04	
o : 0.71	m : 0.10	d : 0.06	e : 0.04	n : 0.04	a : 0.02	l : 0.02	
o : 0.63	e : 0.12	d : 0.10	c : 0.04	m : 0.04	] : 0.02	l : 0.02	n : 0.02	
d : 0.48	e : 0.20	c : 0.12	o : 0.10	a : 0.04	b : 0.02	= : 0.02	
d : 0.48	e : 0.20	c : 0.14	o : 0.06	] : 0.04	b : 0.02	a : 0.02	= : 0.02	
d : 0.44	e : 0.20	c : 0.10	a : 0.06	4 : 0.06	] : 0.04	3 : 0.02	2 : 0.02	b : 0.02	= : 0.02	
d : 0.40	e : 0.18	2 : 0.16	4 : 0.06	3 : 0.06	] : 0.04	c : 0.02	b : 0.02	a : 0.02	= : 0.02	
] : 0.32	2 : 0.20	e : 0.14	3 : 0.12	4 : 0.08	d : 0.04	b : 0.02	a : 0.02	c : 0.02	= : 0.02	
d : 0.24	c : 0.16	3 : 0.12	e : 0.12	4 : 0.08	b : 0.06	2 : 0.06	g : 0.04	h : 0.04	] : 0.04	= : 0.02	
d : 0.28	c : 0.24	e : 0.18	3 : 0.08	b : 0.06	g : 0.04	h : 0.04	4 : 0.04	= : 0.02	
d : 0.30	c : 0.24	e : 0.18	3 : 0.06	g : 0.04	h : 0.04	4 : 0.04	b : 0.02	a : 0.02	[ : 0.02	= : 0.02	
d : 0.28	e : 0.18	c : 0.12	2 : 0.10	] : 0.08	3 : 0.06	g : 0.04	h : 0.04	4 : 0.02	b : 0.02	i : 0.02	= : 0.02	
2 : 0.20	e : 0.18	] : 0.16	3 : 0.10	d : 0.10	c : 0.06	g : 0.04	h : 0.04	b : 0.04	4 : 0.02	i : 0.02	= : 0.02	
d : 0.26	e : 0.20	2 : 0.14	c : 0.10	3 : 0.08	h : 0.06	g : 0.04	b : 0.02	f : 0.02	i : 0.02	] : 0.02	= : 0.02	
d : 0.26	c : 0.16	e : 0.14	] : 0.08	3 : 0.06	h : 0.06	g : 0.04	b : 0.04	2 : 0.04	: : 0.02	f : 0.02	4 : 0.02	i : 0.02	= : 0.02	
d : 0.34	c : 0.18	e : 0.14	: : 0.08	b : 0.06	h : 0.06	f : 0.04	3 : 0.02	] : 0.02	4 : 0.02	i : 0.02	

#score	644.3431256945878
#seq	49
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_transcript_m1_run2.txt

#BEAR
c[ffffff!!a!!ccc"""cccnnnnnccc]ccc333a2	chr1:1279141-1279396(-)$1	255	135	174	13.7900
d!!ggggggg[ccc==========mmmm==========>	chr3:49571194-49571459(+)$1	265	32	71	13.0133
b!!eeeee"""==========oooooo==========]e	chr8:144814961-144815196(-)$1	235	114	153	16.7262
[dddd[bb####ccc"""arrrrrrrrra333ccc4444	chr7:100137141-100137452(+)$1	311	218	257	13.5287
eeeee!!bb[a[===========lll===========]a	chr19:1592054-1592322(-)$1	268	133	172	14.2160
eeee[==========[a[ddddmmmmdddda========	chr16:88548465-88548706(+)$1	241	179	218	13.3565
ccc[ccc[==========mmmm==========]ccc]cc	chr17:80739277-80739551(+)$1	274	132	171	12.3116
cccccc[=============nnnnn=============]	chr19:577328-577578(+)$1	250	112	151	14.9284
"ffffff[ccc!!gggggggoooooogggggggcccfff	chr20:60628638-60628918(-)$1	280	45	84	13.9199
bb####=========="""apppppppa4444=======	chr2:241449212-241449498(-)$1	286	131	170	12.7218
ccc[ffffff"""eeeeeooooooeeeee333ffffff]	chr22:47510842-47511112(+)$1	270	31	70	12.1204
cc!!ffffff"""ccc[bb[ccclllccc]bb]ccc333	chr6:20404051-20404310(+)$1	259	40	79	13.4179
lliiiiiiiiiccc!!ddddoooooodddd333ccchhh	chr9:136827460-136827702(-)$1	242	61	100	14.3341
dddd[ccc!!iiiiiiiii[bbmmmmbb22iiiiiiiii	chr19:2455131-2455371(-)$1	240	30	69	11.6960
dd!!dddd[dddd[ccc[bboooooobb]ccc]dddd]d	chr19:2351716-2352006(+)$1	290	135	174	12.8904
g####===========ccceeeeellleeeee]ccc]==	chr20:60934830-60935105(-)$1	275	60	99	13.2863
dd####ffffff!!a[ccc[aooooooa]ccc]a]ffff	chr1:54411370-54411626(-)$1	256	173	212	15.4512
eee"""ccc####eeeeeooooooeeeee4444ccc]ee	chr16:88826359-88826655(-)$1	296	133	172	13.1676
=======ccc!!ccc[eeeeennnnneeeee]cccccc]	chr3:48470849-48471105(-)$1	256	157	196	13.9075
dd####eeeee[bb!!a[cccnnnnnccc]a4444bb]e	chrX:40035874-40036149(-)$1	275	30	69	12.6639
=======[bb!!ccc$$$$$ddddllldddd4444ccc]	chr1:2004869-2005114(+)$1	245	58	97	12.1820
!!ccc[ccc!!dddd[ccc[ammmma]ccc4444dddd2	chr3:32937277-32937542(+)$1	265	41	80	13.1579
ffffff"""a[ddddaeeeeeooooooeeeee]a]dddd	chr7:2076443-2076782(-)$1	339	240	279	12.7439
eeee[ccc[dddd[a####bbmmmmbb4444a]dddd]c	chr8:145910885-145911153(-)$1	268	70	109	11.2044
dd####eeeee[dddd"""bboooooobbddddeeeee3	chr21:46270593-46270808(-)$1	215	91	130	13.1236
iiiiiiiiiccc[ccceeeeeooooooeeeee]ccc333	chr1:988320-988594(+)$1	274	135	174	15.9119
c[a[ccc!!eeeee!!eeeeeooooooeeeeeeeeee33	chr8:144589037-144589299(-)$1	262	45	84	14.0631
ffffff[ccc"""ffffff[aooooooa]ffffff4444	chr13:108867050-108867338(-)$1	288	170	209	14.5258
[iiiiiiiii!!a[cccddddllldddd22ccca22iii	chr17:80188016-80188294(+)$1	278	152	191	12.8094
c"""ffffff[bb[ccc[cccooooooccc]cccbb22f	chr9:136800653-136800963(-)$1	310	179	218	14.5156
ffiiiiiiiii$$$$$a[cccooooooccc]aiiiiiii	chr1:1072325-1072592(+)$1	267	62	101	16.3564
h"""bb!!dddd[a[dddd[aooooooa]ddddadddd2	chr14:54420441-54420663(-)$1	222	137	176	13.3827
ff!!bb[ccceeeee!!cccnnnnnccc333eeeee]cc	chr16:2756812-2757106(+)$1	294	10	49	12.0115
cc[ccc[ccc!!eeeee[aooooooa]eeeee]ccc]cc	chr1:1280161-1280419(-)$1	258	23	62	14.8615
eee"""eeeee[ccc"""cccmmmmccc4444ccc]eee	chr19:39618371-39618640(+)$1	269	67	106	13.0803
!bb[ccc[a[ggggggg!!cccmmmmccc22ggggggg]	chr1:7765716-7765963(+)$1	247	158	197	12.1554
eee[============[cccrrrrrrrrrccc]======	chr19:44011047-44011320(-)$1	273	2	41	14.6649
ggga[eeeee"""ccc[cccnnnnnccc]ccc]eeeee]	chr2:101436862-101437191(+)$1	329	37	76	13.1134
cc[ggggggg!!ccccccnnnnnccc]ccc333gggggg	chr5:1069891-1070163(-)$1	272	190	229	11.8869
!!ccc[dddd$$$$$ccc!!aooooooa22cccdddd]c	chr19:933450-933719(+)$1	269	100	139	14.4588
bb[bb[ccc[ggggggg[cccoooooocccggggggg22	chr4:1011274-1011532(+)$1	258	25	64	14.9031
eeeeeccc[bb[ccc!!cccooooooccc22cccbbccc	chr8:145019086-145019327(-)$1	241	98	137	14.1857
Diiiiiiiii[ggggggg!!ammmma22ggggggg]iii	chr6:89791214-89791474(+)$1	260	138	177	12.2346
"dddddddd"""eeeee[a[aooooooa]a]eeeee]dd	chr1:46768417-46768713(-)$1	296	210	249	14.1976
a[iiiiiiiii!!a!!ccc[aooooooa]ccc]a22iii	chr22:43283780-43284163(-)$1	383	184	223	17.8294
cc[bb[dddd"""a[ccca[bboooooobb]a]ccc]ad	chr7:44836305-44836571(+)$1	266	56	95	13.9785
!eeeee[ggggggg####cccooooooccc22ggggggg	chr13:20533213-20533479(+)$1	266	139	178	15.4940
=======ccc!!ccc[eeeeennnnneeeee]cccccc]	chr3:48470752-48470997(-)$1	245	49	88	13.9075
c[============="""cccooooooccc55555====	chr10:102122089-102122307(+)$1	218	111	150	14.6670
dccc"""ccc!!ccc"""ddddccclllccc]dddd333	chr20:60540782-60541059(-)$1	277	147	186	12.0716
=========[a[ccc[bboooooobb]ccc]a]======	chr7:2678119-2678380(+)$1	261	98	137	14.6447
gggggggggg!!ccc[a"""aooooooa333a]cccggg	chr2:173370338-173370605(+)$1	267	149	188	18.4344
ffffffffff!!ddddeeeeeooooooeeeee]dddd22	chr21:46844859-46845110(+)$1	251	97	136	13.0699
dddd[a[ccc[ccc[dddd[aooooooa]dddd22ccc3	chr1:247094692-247094967(-)$1	275	63	102	14.5023
"""a[eeeeeeeeee!!ddddooooooddddeeeee22e	chr10:5454904-5455159(+)$1	255	119	158	13.0086
HHeeeeedddd"""ccc!!bboooooobb22ccc333dd	chr6:4777340-4777611(+)$1	271	65	104	12.4937
ddhhhhhhhh"""a!!ccc[aooooooa]ccc22a22hh	chr9:140274434-140274718(-)$1	284	68	107	14.7199
============ccc!!ddddllldddd]ccc]======	chr16:88577285-88577536(+)$1	251	26	65	14.6841

#otherMatches

#Seq PSSM
UGGGGGCCCUGCCGGCUCCGCAUCCCCUGCUGCCCCUCU	chr1:1279141-1279396(-)$1	255	135	174	13.7900
GAAGACCAAGGGACAGUAUUUUUUAUCAAAGGAAUACUA	chr3:49571194-49571459(+)$1	265	32	71	13.0133
CCAGCUGAGGGCCCUGACUUCGAGUCAGAGGUCAGGGGU	chr8:144814961-144815196(-)$1	235	114	153	16.7262
gggaggggaaagggcaggggagaggAAGCAAGGCCGGAG	chr7:100137141-100137452(+)$1	311	218	257	13.5287
CCGUGAGACGCAGGGGGUGCCUUCUUGGGGCGCUCCUGG	chr19:1592054-1592322(-)$1	268	133	172	14.2160
CUGUCGCCCACCUGGAGAGUCCCCACGGACCCCAGGUGG	chr16:88548465-88548706(+)$1	241	179	218	13.3565
GGCGUGGGCGAGGUCUCAGUGCUGAGGCCUUGGUUGAGC	chr17:80739277-80739551(+)$1	274	132	171	12.3116
CUUGGGACCUGAGCUCUGGGCAGCCCUCGGGGCUCAGGA	chr19:577328-577578(+)$1	250	112	151	14.9284
GACUUGGUCAUUGUCUGUGUCUGUCUGCACAGAGUGCUG	chr20:60628638-60628918(-)$1	280	45	84	13.9199
ugggggaggagggcagggaggCAUGGACGGGGCUGCCCU	chr2:241449212-241449498(-)$1	286	131	170	12.7218
UCUGUGAGCCACCUCCAGGGCCUGCUGGGCAGGGCUCGG	chr22:47510842-47511112(+)$1	270	31	70	12.1204
CCGACGCCGCGGGGGCACCGGAUUCUGUUGGGGGCUGAA	chr6:20404051-20404310(+)$1	259	40	79	13.4179
GCCCUGGGCUGGGGGAUGAGCAGCCCCUCAAGACCCAGG	chr9:136827460-136827702(-)$1	242	61	100	14.3341
GGGGUGGUCUCUGGGCUCCAAGGAGACUGGGGGGCCCAG	chr19:2455131-2455371(-)$1	240	30	69	11.6960
ccaggggugccgggugggacgcgggggugccggcuggga	chr19:2351716-2352006(+)$1	290	135	174	12.8904
CAGCAGCCUUUGUUCUGGGAUCUGGAGCGGAUGCCCUGG	chr20:60934830-60935105(-)$1	275	60	99	13.2863
CGGAAACUCAGCGGUGGCCGCGGCGAAGGGGCGGGGCUG	chr1:54411370-54411626(-)$1	256	173	212	15.4512
GCUGGAGGCAGGACCUCUGCUUGUGGAGGGUGGGCCAGG	chr16:88826359-88826655(-)$1	296	133	172	13.1676
GGCUGCUUCCGGCCUggcccgggcggcgggcggggggAG	chr3:48470849-48471105(-)$1	256	157	196	13.9075
gcggaagccgcgacgggggcgggucacgugcggcggugg	chrX:40035874-40036149(-)$1	275	30	69	12.6639
GCUUAGCUGGGUUCUGUUCUGAUGUCGCAUUUUCAAGGU	chr1:2004869-2005114(+)$1	245	58	97	12.1820
ACUUGUGGCAAGUCAUCUACCUCAUGUUAGCAUCUGACA	chr3:32937277-32937542(+)$1	265	41	80	13.1579
GGUGGGUAUGAGUGGCGUUGGUGGGAUCUAGCUGACCAC	chr7:2076443-2076782(-)$1	339	240	279	12.7439
gcgcagccggccggUGAGAGCGCGGGCAACGGGCGGUGG	chr8:145910885-145911153(-)$1	268	70	109	11.2044
UCAGCAGCACCAGUUGACUGCUCGUGUGCCAGCGGUGUG	chr21:46270593-46270808(-)$1	215	91	130	13.1236
caugcaugugugUACUGGGGCAUCCAAGCCCCUGGUCUC	chr1:988320-988594(+)$1	274	135	174	15.9119
UGGUGGUGGUGCCCCAUCUCCAGGUUGGGAGAGGGUAAU	chr8:144589037-144589299(-)$1	262	45	84	14.0631
GGUGUUUGUGCAGCGGCAGGUGAUGGGAGUUGCCGAGUC	chr13:108867050-108867338(-)$1	288	170	209	14.5258
GGGGGCUCUGCCGUGGCACGUGCAGCGUCUGUCCCCCAG	chr17:80188016-80188294(+)$1	278	152	191	12.8094
GUCUGGAGCCUGACGGUUCUGCUCUGCCAGCGCCUCCUG	chr9:136800653-136800963(-)$1	310	179	218	14.5156
GGUUUCCAGCUAACGACGCGGCGCCCACCGAGAGCUGGG	chr1:1072325-1072592(+)$1	267	62	101	16.3564
GUUCGAGCUGGGAGACGCAGUCCCUUCAGUGCGCCCCAA	chr14:54420441-54420663(-)$1	222	137	176	13.3827
UGGGCUGGCCAGGCUGAGGUGCAGGGCCGAGGGCUUGGG	chr16:2756812-2757106(+)$1	294	10	49	12.0115
GUGGCCGAGUCUCCCUCCGGUGAGUCAGAGGGUGCUGGG	chr1:1280161-1280419(-)$1	258	23	62	14.8615
ccugagucccuuuccccugggaaggcucugaaggauggg	chr19:39618371-39618640(+)$1	269	67	106	13.0803
AAGUGGAUGGAAGGCUCGGAGGAACUUCUGAGAGCUUUG	chr1:7765716-7765963(+)$1	247	158	197	12.1554
gggacuggacuccugggucugagggaggaggggcugggg	chr19:44011047-44011320(-)$1	273	2	41	14.6649
CGGGGGACCCAGGGUGGGUAGUACGUGCGCGCGGGGUCG	chr2:101436862-101437191(+)$1	329	37	76	13.1134
GACAUCGGGGUCUGAGACUUUGUGUCUUCAUUUCUCUGA	chr5:1069891-1070163(-)$1	272	190	229	11.8869
GCAGGGAGGUGGAUGAUGGACACGCUGGGACAUGCCUGC	chr19:933450-933719(+)$1	269	100	139	14.4588
GUUGUCCCUACUGGGUCAGGAGUCCCGUCCGACCUGGGC	chr4:1011274-1011532(+)$1	258	25	64	14.9031
GGGUGGGGACUGCACCGCCUCCUGCAGGGACGUGAGCCC	chr8:145019086-145019327(-)$1	241	98	137	14.1857
UGGCGCUUCUGAUUGGCUCCCAGGAGUCGGCCAAUGAGA	chr6:89791214-89791474(+)$1	260	138	177	12.2346
AUUGCGGCUGUGGGCCGCGCGAACUGACACUCGGCUGGG	chr1:46768417-46768713(-)$1	296	210	249	14.1976
GUCUCCACAGUGACAGGCCCCGAAAGUGAGGCAGAGGCU	chr22:43283780-43284163(-)$1	383	184	223	17.8294
CGGCGAGCCCUUGGGCCGCGUCUCCUUUGAGGUCGGGCG	chr7:44836305-44836571(+)$1	266	56	95	13.9785
gccgcCCGGGGAGGUCGCGGGGCAUUUUCCUUUCUCUcc	chr13:20533213-20533479(+)$1	266	139	178	15.4940
GGCUGCUUCCGGCCUggcccgggcggcgggcggggggAG	chr3:48470752-48470997(-)$1	245	49	88	13.9075
GCAGGGUUAGGAAUCUCUUCACUACCCUGAUUCUUGAUU	chr10:102122089-102122307(+)$1	218	111	150	14.6670
cggcgggucuggggcggacacaggcugugccuuguggga	chr20:60540782-60541059(-)$1	277	147	186	12.0716
GAGUUGGGGACAGGGACACAAAGUUGGCCCCGACCCCGG	chr7:2678119-2678380(+)$1	261	98	137	14.6447
GAUACUAAGGACGUUGUUUUGGUUGUACUUUGGAAUUCU	chr2:173370338-173370605(+)$1	267	149	188	18.4344
AGAUGCCCCGGGCUCGGGGGCCAGUCAGUCUCAUGAGGA	chr21:46844859-46845110(+)$1	251	97	136	13.0699
CGGCGCGCUCACCCGCCCCGUUCAGGUAGGGGGAAGGGA	chr1:247094692-247094967(-)$1	275	63	102	14.5023
aagugaggguggCACAGGCUGGAGUGACAGUGUGCCUGG	chr10:5454904-5455159(+)$1	255	119	158	13.0086
GGGGGGUUUCUGGAUCAUUUGAUAAAGCAUUUGGGAGAG	chr6:4777340-4777611(+)$1	271	65	104	12.4937
UCGAAGGGAGGAGGGACCGGCAGGGUGGGUGGGACGGCU	chr9:140274434-140274718(-)$1	284	68	107	14.7199
GGCCUGGCUGAGGCUCGGUCCGUGGGGCAGGUACUCAGU	chr16:88577285-88577536(+)$1	251	26	65	14.6841

#DB
(.((((((..(..(((...(((.....))).)))...).	chr1:1279141-1279396(-)$1	1	135	174	13.7900
(..(((((((.(((((((((((((....)))))))))).	chr3:49571194-49571459(+)$1	1	32	71	13.0133
(..(((((...((((((((((......)))))))))).)	chr8:144814961-144815196(-)$1	1	114	153	16.7262
.((((.((....(((...(.........)...)))....	chr7:100137141-100137452(+)$1	1	218	257	13.5287
(((((..((.(.(((((((((((...))))))))))).)	chr19:1592054-1592322(-)$1	1	133	172	14.2160
((((.((((((((((.(.((((....)))))))))))))	chr16:88548465-88548706(+)$1	1	179	218	13.3565
(((.(((.((((((((((....)))))))))).))).))	chr17:80739277-80739551(+)$1	1	132	171	12.3116
)))(((.(((((((((((((.....))))))))))))).	chr19:577328-577578(+)$1	1	112	151	14.9284
.((((((.(((..(((((((......)))))))))))))	chr20:60628638-60628918(-)$1	1	45	84	13.9199
((....((((((((((...(.......)....)))))))	chr2:241449212-241449498(-)$1	1	131	170	12.7218
(((.((((((...(((((......)))))...)))))).	chr22:47510842-47511112(+)$1	1	31	70	12.1204
((..((((((...(((.((.(((...))).)).)))...	chr6:20404051-20404310(+)$1	1	40	79	13.4179
..)))))))))(((..((((......))))...)))(((	chr9:136827460-136827702(-)$1	1	61	100	14.3341
((((.(((..(((((((((.((....))..)))))))))	chr19:2455131-2455371(-)$1	1	30	69	11.6960
((..((((.((((.(((.((......)).))).)))).)	chr19:2351716-2352006(+)$1	1	135	174	12.8904
(....(((((((((((((((((((...))))).))).))	chr20:60934830-60935105(-)$1	1	60	99	13.2863
((....((((((..(.(((.(......).))).).))))	chr1:54411370-54411626(-)$1	1	173	212	15.4512
(((...(((....(((((......)))))....))).))	chr16:88826359-88826655(-)$1	1	133	172	13.1676
((((((((((..(((.(((((.....))))).)))))).	chr3:48470849-48471105(-)$1	1	157	196	13.9075
((....(((((.((..(.(((.....))).)....)).)	chrX:40035874-40036149(-)$1	1	30	69	12.6639
(((((((.((..(((.....((((...))))....))).	chr1:2004869-2005114(+)$1	1	58	97	12.1820
..(((.(((..((((.(((.(....).)))....)))).	chr3:32937277-32937542(+)$1	1	41	80	13.1579
((((((...(.((((((((((......))))).).))))	chr7:2076443-2076782(-)$1	1	240	279	12.7439
((((.(((.((((.(....((....))....).)))).)	chr8:145910885-145911153(-)$1	1	70	109	11.2044
((....(((((.((((...((......))))))))))).	chr21:46270593-46270808(-)$1	1	91	130	13.1236
)))))))))(((.((((((((......))))).)))...	chr1:988320-988594(+)$1	1	135	174	15.9119
(.(.(((..(((((..(((((......))))))))))..	chr8:144589037-144589299(-)$1	1	45	84	14.0631
((((((.(((...((((((.(......).))))))....	chr13:108867050-108867338(-)$1	1	170	209	14.5258
.(((((((((..(.(((((((...))))..))))..)))	chr17:80188016-80188294(+)$1	1	152	191	12.8094
(...((((((.((.(((.(((......))).)))))..)	chr9:136800653-136800963(-)$1	1	179	218	14.5156
(((((((((((.....(.(((......))).))))))))	chr1:1072325-1072592(+)$1	1	62	101	16.3564
(...((..((((.(.((((.(......).))))))))).	chr14:54420441-54420663(-)$1	1	137	176	13.3827
((..((.((((((((..(((.....)))...))))).))	chr16:2756812-2757106(+)$1	1	10	49	12.0115
((.(((.(((..(((((.(......).))))).))).))	chr1:1280161-1280419(-)$1	1	23	62	14.8615
(((...(((((.(((...(((....)))....))).)))	chr19:39618371-39618640(+)$1	1	67	106	13.0803
.((.(((.(.(((((((..(((....)))..))))))).	chr1:7765716-7765963(+)$1	1	158	197	12.1554
(((.((((((((((((.(((.........))).))))))	chr19:44011047-44011320(-)$1	1	2	41	14.6649
)))(.(((((...(((.(((.....))).))).))))).	chr2:101436862-101437191(+)$1	1	37	76	13.1134
((.(((((((..((((((.....))).)))...))))))	chr5:1069891-1070163(-)$1	1	190	229	11.8869
..(((.((((.....(((..(......)..))))))).)	chr19:933450-933719(+)$1	1	100	139	14.4588
((.((.(((.(((((((.(((......))))))))))..	chr4:1011274-1011532(+)$1	1	25	64	14.9031
((((((((.((.(((..(((......)))..))))))))	chr8:145019086-145019327(-)$1	1	98	137	14.1857
)(((((((((.(((((((..(....)..))))))).)))	chr6:89791214-89791474(+)$1	1	138	177	12.2346
.((((((((...(((((.(.(......).).))))).))	chr1:46768417-46768713(-)$1	1	210	249	14.1976
(.(((((((((..(..(((.(......).))).)..)))	chr22:43283780-43284163(-)$1	1	184	223	17.8294
((.((.((((...(.((((.((......)).).))).))	chr7:44836305-44836571(+)$1	1	56	95	13.9785
.(((((.(((((((....(((......)))..)))))))	chr13:20533213-20533479(+)$1	1	139	178	15.4940
((((((((((..(((.(((((.....))))).)))))).	chr3:48470752-48470997(-)$1	1	49	88	13.9075
(.(((((((((((((...(((......))).....))))	chr10:102122089-102122307(+)$1	1	111	150	14.6670
)(((...(((..(((...(((((((...))).))))...	chr20:60540782-60541059(-)$1	1	147	186	12.0716
(((((((((.(.(((.((......)).))).).))))))	chr7:2678119-2678380(+)$1	1	98	137	14.6447
)))(((((((..(((.(...(......)...).))))))	chr2:173370338-173370605(+)$1	1	149	188	18.4344
((((((((((..(((((((((......))))).))))..	chr21:46844859-46845110(+)$1	1	97	136	13.0699
((((.(.(((.(((.((((.(......).))))..))).	chr1:247094692-247094967(-)$1	1	63	102	14.5023
...(.((((((((((..((((......)))))))))..)	chr10:5454904-5455159(+)$1	1	119	158	13.0086
(((((((((((...(((..((......))..)))...))	chr6:4777340-4777611(+)$1	1	65	104	12.4937
))((((((((...(..(((.(......).)))..)..))	chr9:140274434-140274718(-)$1	1	68	107	14.7199
(((((((((((((((..((((...)))).))).))))))	chr16:88577285-88577536(+)$1	1	26	65	14.6841

#PSSM
c : 0.18	d : 0.15	e : 0.12	= : 0.08	f : 0.08	! : 0.06	b : 0.05	" : 0.05	g : 0.05	[ : 0.03	l : 0.01	i : 0.01	h : 0.01	D : 0.01	a : 0.01	H : 0.01	
d : 0.15	e : 0.13	c : 0.13	f : 0.10	= : 0.08	[ : 0.06	! : 0.06	b : 0.05	i : 0.05	" : 0.05	g : 0.03	l : 0.01	# : 0.01	H : 0.01	
e : 0.15	c : 0.10	i : 0.10	= : 0.10	f : 0.08	! : 0.08	# : 0.08	d : 0.06	[ : 0.06	" : 0.05	g : 0.03	a : 0.01	b : 0.01	h : 0.01	
e : 0.12	i : 0.10	= : 0.10	f : 0.08	[ : 0.08	c : 0.08	# : 0.08	d : 0.06	" : 0.06	g : 0.05	! : 0.05	a : 0.03	b : 0.03	h : 0.01	
f : 0.13	c : 0.12	= : 0.12	[ : 0.10	i : 0.10	e : 0.08	# : 0.08	b : 0.06	g : 0.05	d : 0.05	" : 0.05	h : 0.01	
= : 0.15	f : 0.13	c : 0.13	i : 0.10	e : 0.08	[ : 0.08	# : 0.06	g : 0.05	" : 0.05	d : 0.03	b : 0.03	! : 0.01	a : 0.01	h : 0.01	
= : 0.17	c : 0.15	f : 0.12	e : 0.12	[ : 0.10	i : 0.10	d : 0.06	g : 0.05	! : 0.03	" : 0.03	b : 0.01	h : 0.01	
c : 0.22	= : 0.13	f : 0.10	e : 0.10	i : 0.10	d : 0.08	g : 0.06	[ : 0.06	b : 0.03	! : 0.03	" : 0.01	h : 0.01	
c : 0.18	= : 0.15	i : 0.10	f : 0.08	e : 0.08	d : 0.08	g : 0.06	! : 0.05	[ : 0.05	" : 0.03	b : 0.03	# : 0.01	a : 0.01	h : 0.01	
c : 0.15	= : 0.13	d : 0.10	e : 0.10	f : 0.08	i : 0.08	g : 0.06	[ : 0.06	! : 0.05	" : 0.03	# : 0.03	b : 0.03	a : 0.01	h : 0.01	
! : 0.17	" : 0.13	= : 0.13	e : 0.10	[ : 0.08	i : 0.06	d : 0.06	a : 0.05	g : 0.05	# : 0.03	c : 0.03	f : 0.01	$ : 0.01	b : 0.01	
! : 0.20	= : 0.15	" : 0.13	[ : 0.10	d : 0.08	c : 0.06	g : 0.06	e : 0.05	# : 0.03	$ : 0.03	i : 0.01	f : 0.01	b : 0.01	
c : 0.24	= : 0.15	" : 0.12	d : 0.10	e : 0.08	! : 0.06	g : 0.06	b : 0.03	[ : 0.03	$ : 0.03	i : 0.01	# : 0.01	a : 0.01	
c : 0.31	= : 0.15	e : 0.12	g : 0.08	[ : 0.06	d : 0.06	a : 0.06	$ : 0.03	i : 0.01	! : 0.01	b : 0.01	f : 0.01	" : 0.01	
c : 0.32	= : 0.17	e : 0.10	! : 0.08	g : 0.06	d : 0.06	[ : 0.05	a : 0.03	$ : 0.03	i : 0.01	f : 0.01	# : 0.01	
c : 0.18	! : 0.15	= : 0.13	[ : 0.12	" : 0.06	g : 0.06	e : 0.06	d : 0.06	$ : 0.03	# : 0.03	i : 0.01	a : 0.01	f : 0.01	
c : 0.20	e : 0.17	" : 0.12	= : 0.08	a : 0.06	g : 0.06	! : 0.06	[ : 0.05	d : 0.05	# : 0.03	i : 0.01	$ : 0.01	f : 0.01	b : 0.01	
c : 0.20	" : 0.13	[ : 0.13	e : 0.13	d : 0.10	= : 0.08	g : 0.03	b : 0.03	# : 0.03	! : 0.03	i : 0.01	$ : 0.01	f : 0.01	
c : 0.27	d : 0.13	e : 0.10	" : 0.06	= : 0.06	a : 0.06	! : 0.06	o : 0.05	b : 0.03	m : 0.01	g : 0.01	i : 0.01	$ : 0.01	# : 0.01	f : 0.01	n : 0.01	
c : 0.22	[ : 0.18	e : 0.12	d : 0.10	= : 0.06	o : 0.06	b : 0.06	! : 0.03	r : 0.01	m : 0.01	g : 0.01	a : 0.01	$ : 0.01	n : 0.01	" : 0.01	
a : 0.18	c : 0.17	o : 0.13	e : 0.12	d : 0.10	b : 0.08	n : 0.06	= : 0.05	r : 0.03	m : 0.01	p : 0.01	
o : 0.51	n : 0.12	m : 0.08	c : 0.05	d : 0.05	= : 0.03	r : 0.03	b : 0.03	l : 0.03	p : 0.01	e : 0.01	
o : 0.53	n : 0.13	m : 0.12	= : 0.05	r : 0.03	c : 0.03	l : 0.03	p : 0.01	e : 0.01	d : 0.01	
o : 0.53	n : 0.12	m : 0.12	l : 0.06	= : 0.03	r : 0.03	c : 0.03	p : 0.01	e : 0.01	d : 0.01	
o : 0.48	m : 0.13	n : 0.12	l : 0.06	r : 0.03	e : 0.03	d : 0.03	c : 0.03	= : 0.01	p : 0.01	b : 0.01	
o : 0.46	l : 0.08	n : 0.06	m : 0.06	c : 0.06	a : 0.05	r : 0.03	= : 0.03	e : 0.03	b : 0.03	d : 0.03	p : 0.01	
o : 0.39	c : 0.12	d : 0.06	e : 0.06	] : 0.06	= : 0.05	b : 0.05	l : 0.05	r : 0.03	n : 0.01	m : 0.01	g : 0.01	p : 0.01	2 : 0.01	
c : 0.27	a : 0.17	e : 0.17	d : 0.10	= : 0.06	b : 0.06	r : 0.03	m : 0.01	g : 0.01	4 : 0.01	2 : 0.01	o : 0.01	l : 0.01	
c : 0.24	e : 0.17	] : 0.17	= : 0.08	d : 0.06	4 : 0.05	2 : 0.05	b : 0.05	g : 0.03	3 : 0.03	a : 0.01	r : 0.01	
c : 0.29	e : 0.13	d : 0.12	2 : 0.10	= : 0.08	3 : 0.06	4 : 0.06	g : 0.03	] : 0.03	f : 0.01	a : 0.01	b : 0.01	
c : 0.17	e : 0.13	] : 0.10	3 : 0.10	= : 0.08	4 : 0.08	d : 0.08	2 : 0.06	g : 0.05	a : 0.03	b : 0.01	i : 0.01	f : 0.01	5 : 0.01	
c : 0.22	e : 0.15	= : 0.10	4 : 0.10	a : 0.08	3 : 0.06	g : 0.06	] : 0.05	d : 0.05	b : 0.01	i : 0.01	f : 0.01	2 : 0.01	5 : 0.01	
] : 0.29	c : 0.17	= : 0.10	g : 0.08	4 : 0.06	d : 0.06	e : 0.06	f : 0.03	3 : 0.03	i : 0.03	5 : 0.01	2 : 0.01	
c : 0.31	= : 0.15	e : 0.10	d : 0.08	a : 0.08	g : 0.08	4 : 0.05	f : 0.03	i : 0.03	2 : 0.03	5 : 0.01	
c : 0.24	= : 0.15	d : 0.12	e : 0.10	g : 0.08	2 : 0.05	3 : 0.03	f : 0.03	i : 0.03	] : 0.03	4 : 0.03	b : 0.03	5 : 0.01	a : 0.01	
c : 0.24	= : 0.17	d : 0.13	e : 0.10	g : 0.06	b : 0.05	2 : 0.05	3 : 0.03	4 : 0.03	f : 0.03	i : 0.03	] : 0.03	
= : 0.17	] : 0.12	d : 0.12	3 : 0.08	i : 0.08	c : 0.08	g : 0.08	e : 0.06	f : 0.05	2 : 0.05	4 : 0.03	h : 0.01	b : 0.01	
= : 0.15	c : 0.13	] : 0.10	i : 0.08	d : 0.08	3 : 0.06	e : 0.06	2 : 0.06	g : 0.06	f : 0.05	a : 0.03	4 : 0.03	h : 0.03	
= : 0.12	] : 0.12	c : 0.10	3 : 0.10	2 : 0.08	e : 0.08	i : 0.08	d : 0.08	f : 0.05	g : 0.05	4 : 0.03	h : 0.03	> : 0.01	a : 0.01	

#score	800.6865310339687
#seq	58
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_transcript_m2_run2.txt

#BEAR
:==========oooooo==========:	chr3:37366020-37366262(+)$1	242	168	196	13.3509
ffiiiiiiiiiooooooiiiiiiiii33	chr9:100777555-100777772(+)$1	217	12	40	13.8635
####gggggggooooooggggggg22ee	chr5:145608408-145608665(+)$1	257	81	109	12.2089
###ccc"""ccclllcccccc4444eee	chr7:72873765-72873986(-)$1	221	17	45	10.9071
!!dddd!!cccoooooocccdddd]ggg	chr14:103807199-103807460(+)$1	261	81	109	13.2586
ggg$$$$$cccooooooccc22gggggg	chr3:9488646-9488873(+)$1	227	126	154	14.8418
=====[bb"""bbmmmmbb333bb]===	chr16:89952154-89952409(+)$1	255	57	85	10.8365
ffffff"""bboooooobb4444fffff	chr3:37369037-37369256(+)$1	219	33	61	15.6876
===========oooooo===========	chr1:150198950-150199202(-)$1	252	51	79	15.3362
:ggggggg!!aooooooa22gggggggb	chr1:70716292-70716572(+)$1	280	127	155	12.5733
iiiiiiii[bboooooobb]iiiiiiii	chr5:176943254-176943541(-)$1	287	6	34	15.3258
bffffff[cccooooooccc22ffffff	chr11:62291296-62291528(-)$1	232	156	184	13.5671
gggg[bb[cccooooooccc]bb22ggg	chr8:117861102-117861370(-)$1	268	187	215	13.6909
ccc[dddd[bboooooobb]dddd]ccc	chr16:2808884-2809087(+)$1	203	20	48	12.4974
ggggggg!!cccnnnnnccc22gggggg	chr2:172546585-172546874(+)$1	289	176	204	12.3237
ffffff"""cccnnnnnccc22ffffff	chr14:102549340-102549573(-)$1	233	44	72	11.5059
eeeebb"""cccmmmmccc333bb333e	chr9:35689057-35689304(-)$1	247	213	241	11.2119
=========!!bbmmmmbb22=======	chr7:155493362-155493690(+)$1	328	19	47	11.0640
e[bb[a!!cccooooooccc22abbeee	chr3:50102363-50102659(+)$1	296	169	197	14.2700
dddeeeee[bboooooobb]eeeee]dd	chr1:38167326-38167590(+)$1	264	71	99	12.0747
:eeeee"""bboooooobb4444eeeee	chr11:65267078-65267281(+)$1	203	1	29	14.9171
ggggggeeeeeooooooeeeee]ggggg	chr6:76600844-76601124(+)$1	280	220	248	11.5010
c[bb!!cccbboooooobb]ccc22bbc	chr1:38033170-38033423(-)$1	253	55	83	12.8607
b[bb!!a!!bboooooobb22a22bb]b	chr11:94180283-94180585(-)$1	302	105	133	14.4231
eeee####cccooooooccc4444eeee	chr19:10668744-10669005(-)$1	261	133	161	15.2592
[eeeee"""cccmmmmccc333eeeeee	chr3:47742680-47742993(-)$1	313	208	236	11.4403
eeccc####bboooooobb22ccc:ddd	chrX:53440081-53440319(-)$1	238	100	128	14.1009
eeee"""a!!bbnnnnnbb22aeeeee]	chr4:56283242-56283544(+)$1	302	188	216	11.4851
ffff$$$$$bboooooobb333ffffff	chr11:65267479-65267683(+)$1	204	146	174	15.1921
===========oooooo===========	chr1:186310362-186310622(-)$1	260	0	28	15.3362
eeee]abb[bboooooobb]bb:ggggg	chr19:39948214-39948423(+)$1	209	42	70	12.1225
ffffff"""bboooooobb4444fffff	chr3:37369056-37369317(+)$1	261	14	42	15.6876
dd[ccc"""bbnnnnnbb4444ccc]dd	chr5:145531336-145531606(-)$1	270	77	105	11.0534
:==========oooooo==========:	chr11:73950079-73950403(+)$1	324	59	87	13.3509
cc####a!!cccmmmmccc22a333ccc	chr12:6711097-6711413(-)$1	316	266	294	11.2810
gggggg####cccmmmmccc22gggggg	chr6:30638514-30638824(-)$1	310	211	239	11.6415
b[a[gggggggoooooogggggggabbe	chr19:10670185-10670485(-)$1	300	210	238	12.1899
:eeeee"""bboooooobb4444eeeee	chr11:65267068-65267272(+)$1	204	11	39	14.9171
iiiiiii!!bboooooobb333iiiiii	chr17:16040523-16040777(-)$1	254	132	160	17.0940
ee[a"""a[cccnnnnnccc]a333a]e	chr1:52305950-52306216(-)$1	266	215	243	12.0335
ffiiiiiiiiiooooooiiiiiiiii33	chr9:100777549-100777755(+)$1	206	18	46	13.8635
b[dddd!!cccoooooocccdddd]bb3	chr19:15510025-15510286(-)$1	261	45	73	12.3977
ee:cccbbcccooooooccc22bb]ccc	chr9:139734075-139734331(+)$1	256	61	89	12.3287
====####cccooooooccc333=====	chr9:131456112-131456339(+)$1	227	56	84	17.0420
ggggggg[cccooooooccc333ggggg	chr7:91682011-91682292(+)$1	281	251	279	15.9258
gggggg"""bboooooobb333gggggg	chr12:1940330-1940539(-)$1	209	45	73	17.4513
[ccc"""ddddoooooodddd4444ccc	chr5:137892361-137892574(-)$1	213	161	189	12.4480
ggggggg"""bbnnnnnbb22ggggggg	chr3:121410537-121410820(-)$1	283	96	124	12.2679
ddddabb[cccooooooccc333bb]a]	chr16:88787472-88787716(-)$1	244	14	42	13.6413
[ffffff!!bboooooobb]ffffff]b	chr1:86173206-86173519(-)$1	313	60	88	13.4011
eeee!!a[cccooooooccc]a22eeee	chr12:123003283-123003506(-)$1	223	85	113	14.2524

#otherMatches

#Seq PSSM
AUUCAUAUUUUGAAUGAGGAAUAUGAAA	chr3:37366020-37366262(+)$1	242	168	196	13.3509
UUGUUGUUGCCUCCAUUGGCAAUAAUCU	chr9:100777555-100777772(+)$1	217	12	40	13.8635
ACUCAAUAUUUUCAUAUAGGUAUUUCAG	chr5:145608408-145608665(+)$1	257	81	109	12.2089
AAGGCUUCAUGGCUCCCAAGCAAAAGAG	chr7:72873765-72873986(-)$1	221	17	45	10.9071
AAAUCAUUCCUCUUAACAGGUGGUGUAU	chr14:103807199-103807460(+)$1	261	81	109	13.2586
UUUGAAAACUUAGAGAAAAGAAAGAAGC	chr3:9488646-9488873(+)$1	227	126	154	14.8418
AUAAUGUCAGUGUGGUGAUUAAGAGGUU	chr16:89952154-89952409(+)$1	255	57	85	10.8365
ACUUUUGGAAGAAAACACUGAAGAAAAG	chr3:37369037-37369256(+)$1	219	33	61	15.6876
UCAUCUUUAAAUGAUUUUUUAAAGAUGG	chr1:150198950-150199202(-)$1	252	51	79	15.3362
GAUUCACUAAGAGAAUCCAAAGUGAAUG	chr1:70716292-70716572(+)$1	280	127	155	12.5733
AGGAUCCUCGCCCCAAAGCCAGGAUCCU	chr5:176943254-176943541(-)$1	287	6	34	15.3258
AGGGCCCAAGUAUGAACAUUGAGGGCCC	chr11:62291296-62291528(-)$1	232	156	184	13.5671
UAUUGCCGCUGUUGUCUCAGAGGAAAAU	chr8:117861102-117861370(-)$1	268	187	215	13.6909
CCUUUUUAGGAGAGAGAUUGUAAGUGGG	chr16:2808884-2809087(+)$1	203	20	48	12.4974
aaaaaaaaagaaGUAUGUUUGAUUUUUU	chr2:172546585-172546874(+)$1	289	176	204	12.3237
CUGAAGGAAUUUGAGGGGAAGACUUUAG	chr14:102549340-102549573(-)$1	233	44	72	11.5059
CCCCCCGGGUAUGGGAAUAAGAGGAUUG	chr9:35689057-35689304(-)$1	247	213	241	11.2119
UUAAAUAUUUUAGCAUUCUUUAAUAUUU	chr7:155493362-155493690(+)$1	328	19	47	11.0640
GUGAAGAAGGAAGAGAGUCCCCCUCCAG	chr3:50102363-50102659(+)$1	296	169	197	14.2700
CCUUAGUCUCAUUUGAUUGUGACUGCAG	chr1:38167326-38167590(+)$1	264	71	99	12.0747
uaauugggagugguaggaugaaacaauu	chr11:65267078-65267281(+)$1	203	1	29	14.9171
ACAggcugggugugguggcucaugccug	chr6:76600844-76601124(+)$1	280	220	248	11.5010
CAGCACCUUCCAAAAAGGGAAAGAAGCG	chr1:38033170-38033423(-)$1	253	55	83	12.8607
CAGCAGCAACCAACAAAGGAAGAGGCCG	chr11:94180283-94180585(-)$1	302	105	133	14.4231
AGCCACAAUUUGAGGAAGAAGAAGGGCU	chr19:10668744-10669005(-)$1	261	133	161	15.2592
UAGUACUUCCCAAAAAUGGUUUGUAUUC	chr3:47742680-47742993(-)$1	313	208	236	11.4403
CGGCUGAACGCAAGGAAGCAAAGCAGGA	chrX:53440081-53440319(-)$1	238	100	128	14.1009
UUGAUCUGGACCAAAAAGGCACUCAACU	chr4:56283242-56283544(+)$1	302	188	216	11.4851
AUCAAAAAGCUACUAAAAGGACUGGUGU	chr11:65267479-65267683(+)$1	204	146	174	15.1921
AUCCUCUUUAUUUUGUCAUAGGGAGGAU	chr1:186310362-186310622(-)$1	260	0	28	15.3362
UCCUGGGAGCUGUUAUGAGGUCACCUUU	chr19:39948214-39948423(+)$1	209	42	70	12.1225
ACUUUUGGAAGAAAACACUGAAGAAAAG	chr3:37369056-37369317(+)$1	261	14	42	15.6876
UCUGCUGUAACCAUUUGUGAUGAGUUGA	chr5:145531336-145531606(-)$1	270	77	105	11.0534
GAAAGAGGUGUGUAAUAGCACUUUUUUA	chr11:73950079-73950403(+)$1	324	59	87	13.3509
ggaUGAUGAUGAUGAUUCAAAGGUGCCU	chr12:6711097-6711413(-)$1	316	266	294	11.2810
GGGACAAGGAUCGGACUCGAAAUGUCCU	chr6:30638514-30638824(-)$1	310	211	239	11.6415
GUGAGCUGGGGAGGACCCCCCAGCCCUG	chr19:10670185-10670485(-)$1	300	210	238	12.1899
uaauugggagugguaggaugaaacaauu	chr11:65267068-65267272(+)$1	204	11	39	14.9171
AAACGCAGAGGCAGAAACCAGGUGUGUU	chr17:16040523-16040777(-)$1	254	132	160	17.0940
augaguuugaugaugaacaugaugauga	chr1:52305950-52306216(-)$1	266	215	243	12.0335
UUGUUGUUGCCUCCAUUGGCAAUAAUCU	chr9:100777549-100777755(+)$1	206	18	46	13.8635
GUGCCCAUCUGCUCCCACAGGGGCCCUA	chr19:15510025-15510286(-)$1	261	45	73	12.3977
CUGCUCCAGGAUGACUUUCCCGUGCGAG	chr9:139734075-139734331(+)$1	256	61	89	12.3287
UUUAAGGUUCCCGAUAUGGAUGAUgaag	chr9:131456112-131456339(+)$1	227	56	84	17.0420
UAGCAGUCAGGUAACCUCCUUAUAUUGC	chr7:91682011-91682292(+)$1	281	251	279	15.9258
UGGGCCAGGCCGUUGAUGGACAGGUCCA	chr12:1940330-1940539(-)$1	209	45	73	17.4513
UGCCAGUGAAGUUUAUUUUUCUGUGGGU	chr5:137892361-137892574(-)$1	213	161	189	12.4480
UCUUGGAAAAAGACCAACUCAUCCAAGA	chr3:121410537-121410820(-)$1	283	96	124	12.2679
GGGUCGGACCCACGGACGGGACCCCAGA	chr16:88787472-88787716(-)$1	244	14	42	13.6413
AAUGCAUAAAAGAGGAAUUGAUGCAUGG	chr1:86173206-86173519(-)$1	313	60	88	13.4011
AGGCAGAAGUCACUCAAGAUCUAGGUCU	chr12:123003283-123003506(-)$1	223	85	113	14.2524

#DB
.((((((((((......)))))))))).	chr3:37366020-37366262(+)$1	1	168	196	13.3509
(((((((((((......)))))))))..	chr9:100777555-100777772(+)$1	1	12	40	13.8635
....(((((((......)))))))..))	chr5:145608408-145608665(+)$1	1	81	109	12.2089
...(((...(((...))))))....)))	chr7:72873765-72873986(-)$1	1	17	45	10.9071
..((((..(((......))))))).)))	chr14:103807199-103807460(+)$1	1	81	109	13.2586
(((.....(((......)))..))))))	chr3:9488646-9488873(+)$1	1	126	154	14.8418
(((((.((...((....))...)).)))	chr16:89952154-89952409(+)$1	1	57	85	10.8365
((((((...((......))....)))))	chr3:37369037-37369256(+)$1	1	33	61	15.6876
(((((((((((......)))))))))))	chr1:150198950-150199202(-)$1	1	51	79	15.3362
.(((((((..(......)..)))))))(	chr1:70716292-70716572(+)$1	1	127	155	12.5733
((((((((.((......)).))))))))	chr5:176943254-176943541(-)$1	1	6	34	15.3258
)((((((.(((......)))..))))))	chr11:62291296-62291528(-)$1	1	156	184	13.5671
((((.((.(((......))).))..)))	chr8:117861102-117861370(-)$1	1	187	215	13.6909
(((.((((.((......)).)))).)))	chr16:2808884-2809087(+)$1	1	20	48	12.4974
(((((((..(((.....)))..))))))	chr2:172546585-172546874(+)$1	1	176	204	12.3237
((((((...(((.....)))..))))))	chr14:102549340-102549573(-)$1	1	44	72	11.5059
((((((...(((....)))...))...)	chr9:35689057-35689304(-)$1	1	213	241	11.2119
(((((((((..((....))..)))))))	chr7:155493362-155493690(+)$1	1	19	47	11.0640
(.((.(..(((......)))..))))))	chr3:50102363-50102659(+)$1	1	169	197	14.2700
((((((((.((......)).))))).))	chr1:38167326-38167590(+)$1	1	71	99	12.0747
.(((((...((......))....)))))	chr11:65267078-65267281(+)$1	1	1	29	14.9171
(((((((((((......))))).)))))	chr6:76600844-76601124(+)$1	1	220	248	11.5010
(.((..(((((......)).)))..)))	chr1:38033170-38033423(-)$1	1	55	83	12.8607
(.((..(..((......))..)..)).)	chr11:94180283-94180585(-)$1	1	105	133	14.4231
((((....(((......)))....))))	chr19:10668744-10669005(-)$1	1	133	161	15.2592
.(((((...(((....)))...))))))	chr3:47742680-47742993(-)$1	1	208	236	11.4403
))(((....((......))..))).(((	chrX:53440081-53440319(-)$1	1	100	128	14.1009
((((...(..((.....))..)))))).	chr4:56283242-56283544(+)$1	1	188	216	11.4851
((((.....((......))...))))))	chr11:65267479-65267683(+)$1	1	146	174	15.1921
(((((((((((......)))))))))))	chr1:186310362-186310622(-)$1	1	0	28	15.3362
)))).)((.((......)).)).(((((	chr19:39948214-39948423(+)$1	1	42	70	12.1225
((((((...((......))....)))))	chr3:37369056-37369317(+)$1	1	14	42	15.6876
((.(((...((.....))....))).))	chr5:145531336-145531606(-)$1	1	77	105	11.0534
.((((((((((......)))))))))).	chr11:73950079-73950403(+)$1	1	59	87	13.3509
((....(..(((....)))..)...)))	chr12:6711097-6711413(-)$1	1	266	294	11.2810
((((((....(((....)))..))))))	chr6:30638514-30638824(-)$1	1	211	239	11.6415
(.(.(((((((......))))))))))(	chr19:10670185-10670485(-)$1	1	210	238	12.1899
.(((((...((......))....)))))	chr11:65267068-65267272(+)$1	1	11	39	14.9171
(((((((..((......))...))))))	chr17:16040523-16040777(-)$1	1	132	160	17.0940
((.(...(.(((.....))).)...).)	chr1:52305950-52306216(-)$1	1	215	243	12.0335
(((((((((((......)))))))))..	chr9:100777549-100777755(+)$1	1	18	46	13.8635
(.((((..(((......))))))).)).	chr19:15510025-15510286(-)$1	1	45	73	12.3977
)).((((((((......)))..)).)))	chr9:139734075-139734331(+)$1	1	61	89	12.3287
((((....(((......)))...)))))	chr9:131456112-131456339(+)$1	1	56	84	17.0420
(((((((.(((......)))...)))))	chr7:91682011-91682292(+)$1	1	251	279	15.9258
((((((...((......))...))))))	chr12:1940330-1940539(-)$1	1	45	73	17.4513
.(((...((((......))))....)))	chr5:137892361-137892574(-)$1	1	161	189	12.4480
(((((((...((.....))..)))))))	chr3:121410537-121410820(-)$1	1	96	124	12.2679
(((((((.(((......)))...)).).	chr16:88787472-88787716(-)$1	1	14	42	13.6413
.((((((..((......)).)))))).)	chr1:86173206-86173519(-)$1	1	60	88	13.4011
((((..(.(((......))).)..))))	chr12:123003283-123003506(-)$1	1	85	113	14.2524

#PSSM
e : 0.17	g : 0.15	f : 0.11	: : 0.09	= : 0.09	b : 0.07	c : 0.05	d : 0.05	[ : 0.05	# : 0.03	i : 0.03	! : 0.01	
e : 0.21	g : 0.17	f : 0.15	= : 0.13	[ : 0.09	c : 0.05	d : 0.05	# : 0.03	i : 0.03	! : 0.01	
g : 0.17	e : 0.15	= : 0.13	f : 0.11	i : 0.07	d : 0.07	# : 0.05	c : 0.05	b : 0.05	[ : 0.03	a : 0.01	: : 0.01	
e : 0.17	g : 0.15	= : 0.13	f : 0.11	c : 0.09	i : 0.07	d : 0.05	b : 0.05	# : 0.03	[ : 0.03	$ : 0.01	a : 0.01	
g : 0.17	= : 0.11	f : 0.09	i : 0.07	c : 0.07	e : 0.07	d : 0.05	! : 0.05	# : 0.05	" : 0.05	$ : 0.03	[ : 0.03	b : 0.01	] : 0.01	a : 0.01	
g : 0.17	= : 0.09	f : 0.09	i : 0.07	e : 0.07	# : 0.07	c : 0.05	d : 0.05	b : 0.05	! : 0.05	" : 0.05	$ : 0.03	a : 0.03	[ : 0.01	
" : 0.25	g : 0.11	= : 0.09	b : 0.09	i : 0.07	# : 0.07	! : 0.05	a : 0.05	$ : 0.03	f : 0.03	e : 0.03	d : 0.01	c : 0.01	
" : 0.21	! : 0.15	= : 0.09	[ : 0.09	# : 0.07	i : 0.05	g : 0.05	b : 0.05	$ : 0.03	d : 0.03	e : 0.03	a : 0.03	c : 0.01	
c : 0.25	" : 0.23	! : 0.13	= : 0.09	[ : 0.09	i : 0.03	g : 0.03	# : 0.03	e : 0.01	$ : 0.01	d : 0.01	
c : 0.37	b : 0.31	= : 0.07	! : 0.05	i : 0.03	g : 0.03	" : 0.03	e : 0.01	# : 0.01	d : 0.01	
c : 0.39	b : 0.35	= : 0.07	i : 0.03	g : 0.03	" : 0.01	a : 0.01	! : 0.01	e : 0.01	d : 0.01	
o : 0.74	c : 0.15	b : 0.07	n : 0.01	
o : 0.74	n : 0.11	m : 0.05	b : 0.03	l : 0.01	c : 0.01	
o : 0.74	m : 0.11	n : 0.11	l : 0.01	
o : 0.74	m : 0.11	n : 0.11	l : 0.01	
o : 0.74	m : 0.11	n : 0.11	c : 0.01	
o : 0.74	n : 0.09	c : 0.07	m : 0.05	b : 0.01	
c : 0.39	b : 0.39	= : 0.07	i : 0.03	g : 0.03	a : 0.01	e : 0.01	d : 0.01	
c : 0.39	b : 0.37	= : 0.07	i : 0.03	g : 0.03	2 : 0.01	e : 0.01	4 : 0.01	d : 0.01	
c : 0.33	2 : 0.13	3 : 0.11	] : 0.11	4 : 0.09	= : 0.07	i : 0.03	g : 0.03	e : 0.01	d : 0.01	
2 : 0.25	3 : 0.17	4 : 0.11	= : 0.07	d : 0.07	i : 0.05	g : 0.05	] : 0.05	c : 0.03	e : 0.03	b : 0.01	f : 0.01	
3 : 0.17	4 : 0.15	2 : 0.13	= : 0.09	a : 0.09	g : 0.07	i : 0.05	d : 0.05	b : 0.03	e : 0.03	c : 0.03	f : 0.01	
g : 0.15	4 : 0.13	= : 0.09	3 : 0.09	i : 0.07	b : 0.07	f : 0.07	d : 0.05	e : 0.05	c : 0.05	2 : 0.03	a : 0.01	] : 0.01	: : 0.01	
g : 0.21	= : 0.11	f : 0.11	b : 0.09	e : 0.09	i : 0.07	2 : 0.07	4 : 0.05	d : 0.05	c : 0.03	3 : 0.03	
g : 0.17	e : 0.13	= : 0.11	f : 0.11	] : 0.09	i : 0.07	2 : 0.05	3 : 0.05	b : 0.05	4 : 0.03	: : 0.01	c : 0.01	a : 0.01	
g : 0.21	e : 0.15	= : 0.13	f : 0.11	i : 0.07	c : 0.07	b : 0.07	] : 0.05	2 : 0.01	3 : 0.01	d : 0.01	a : 0.01	
g : 0.21	e : 0.17	= : 0.13	f : 0.09	c : 0.07	3 : 0.05	d : 0.05	b : 0.05	] : 0.05	i : 0.03	a : 0.01	
e : 0.21	g : 0.19	= : 0.09	f : 0.09	c : 0.09	3 : 0.05	b : 0.05	d : 0.05	: : 0.03	i : 0.03	] : 0.03	

#score	683.3053540382002
#seq	51
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_UTR_m2_run1.txt

#BEAR
gggbb[bbmmmmbb]bb]g	chr6:3272140-3272364(+)$1	224	91	110	11.1765
fa[cccbbmmmmbb]ccc]	chr17:7477044-7477320(+)$1	276	163	182	11.7668
dccc[cccmmmmccc]ccc	chr1:25664360-25664659(-)$1	299	97	116	9.4358
dddd[cccmmmmccc333d	chr22:19120334-19120601(-)$1	267	17	36	9.0748
c[bb!!bbmmmmbb22bbc	chr1:144931690-144931961(-)$1	271	232	251	11.7266
ggggggbbmmmmbbfffff	chr3:195622702-195622958(-)$1	256	80	99	10.5893
c!!bb[bbmmmmbb]bb22	chr1:32827762-32828056(-)$1	294	55	74	10.8971
dddd[cccmmmmcccdddd	chr19:15348962-15349227(-)$1	265	38	57	8.5152
eeeee[bbmmmmbb]eeee	chr19:1472446-1472699(-)$1	253	0	19	11.5235
!ccc[cccmmmmccccccd	chr4:760404-760675(-)$1	271	199	218	9.2948
ffff[cccmmmmccc22ff	chr22:50050722-50050956(-)$1	234	83	102	8.3139
eeeee[bbmmmmbbeeeee	chr14:105713508-105713747(-)$1	239	34	53	10.7527
ffffffbbmmmmbb]ffff	chr12:125398765-125399053(-)$1	288	213	232	10.5414
c[ddddbbmmmmbb]dddd	chr4:1228553-1228828(-)$1	275	117	136	10.9631
Cccc!!bbmmmmbb22ccc	chr21:45181606-45181866(+)$1	260	205	224	11.7645
:dddd[bbmmmmbb]dddd	chr16:1741690-1741952(+)$1	262	80	99	10.6323
hhhhhhbbmmmmbb22hhh	chr8:94752698-94752925(-)$1	227	183	202	10.3994
!ccc!!bbmmmmbb]ccc3	chr4:515963-516237(+)$1	274	33	52	12.7280
dddd!!bbmmmmbb]dddd	chr21:45223926-45224155(+)$1	229	184	203	11.8969
####a[bbmmmmbb]a333	chr4:1229556-1229790(-)$1	234	155	174	11.7539
[dddd[bbmmmmbb]dddd	chr21:46644312-46644583(+)$1	271	65	84	11.5521
dddd[cccmmmmccc]ddd	chr1:144932077-144932378(-)$1	301	279	298	8.8154
fffff[bbmmmmbb]ffff	chr19:58991274-58991529(-)$1	255	150	169	11.1151
ccc[bbbbmmmmbb]bbcc	chr19:58774618-58774902(+)$1	284	150	169	10.7800
ee"""cccmmmmccc4444	chr4:762904-763141(-)$1	237	100	119	8.7384
!gggggggmmmmggggggg	chr19:58990794-58991043(-)$1	249	217	236	8.0212
eccc[cccmmmmccc]ccc	chr17:8378145-8378435(+)$1	290	246	265	9.4645
ffff!!bbmmmmbbfffff	chr8:94752884-94753180(-)$1	296	189	208	10.8533
Ceeeeebbmmmmbb]eeee	chr16:87732033-87732282(-)$1	249	11	30	9.9845
#gggggggmmmmggggggg	chr4:760575-760797(-)$1	222	129	148	7.9077
[bb"""bbmmmmbb333bb	chr16:89350227-89350495(-)$1	268	39	58	11.2635
bccc!!bbmmmmbb22ccc	chr16:89346968-89347210(-)$1	242	197	216	12.5272
[ccc[cccmmmmccc]ccc	chr16:75018775-75019059(-)$1	284	158	177	9.5254
eeee[cccmmmmccc]eee	chr6:3272344-3272605(+)$1	261	195	214	8.7892
==bb!!bbmmmmbb22bb]	chr9:130214435-130214714(+)$1	279	173	192	11.6745
cc[cccbbmmmmbb]ccc3	chr16:87736850-87737107(-)$1	257	223	242	11.9871
!!bb!!bbmmmmbb333bb	chr16:87736108-87736346(-)$1	238	60	79	11.7849
eeeee[bbmmmmbb]eeee	chr17:62893266-62893544(-)$1	278	246	265	11.5235
eeeeacccmmmmccc]a33	chr19:5112764-5113027(+)$1	263	2	21	8.7266
eee!!cccmmmmccceeee	chr1:1028060-1028323(-)$1	263	180	199	8.6048
fa[cccbbmmmmbb]ccc]	chr17:7477147-7477421(+)$1	274	60	79	11.7668
bb[bb[bbmmmmbb]bbbb	chr7:1006174-1006476(-)$1	302	225	244	10.3859
b[ccc[bbmmmmbb]ccc]	chr11:61583300-61583569(-)$1	269	75	94	12.1688
bccc!!bbmmmmbb22ccc	chr16:89346809-89347062(-)$1	253	49	68	12.5272
hhhhhhbbmmmmbb22hhh	chr8:94752665-94752898(-)$1	233	156	175	10.3994
eccc!!bbmmmmbb22ccc	chr8:144343525-144343784(+)$1	259	7	26	12.6867
dddd!!bbmmmmbb]dddd	chr7:76255993-76256260(+)$1	267	190	209	11.8969
dd[bb[bbmmmmbb]bb]d	chr4:763952-764205(-)$1	253	142	161	11.1528
eeeee[bbmmmmbb]eeee	chr7:32931169-32931435(-)$1	266	225	244	11.5235
:dddd[bbmmmmbb22ddd	chr1:144931970-144932202(-)$1	232	0	19	10.7730
=====[bbmmmmbb22===	chr9:139715781-139716021(+)$1	240	193	212	12.2298
d[ccc[bbmmmmbb]cccd	chr19:1104362-1104635(+)$1	273	143	162	12.2740

#otherMatches

#Seq PSSM
GGCCCAGCUCCUGCGGGUG	chr6:3272140-3272364(+)$1	224	91	110	11.1765
CAGCGCGCUGGUGCUGCGG	chr17:7477044-7477320(+)$1	276	163	182	11.7668
GAGGUGACGAGUGUUUUCU	chr1:25664360-25664659(-)$1	299	97	116	9.4358
GAGGGCUGAGGACAGAAAU	chr22:19120334-19120601(-)$1	267	17	36	9.0748
UGCCACCCGCUAGGAGGGA	chr1:144931690-144931961(-)$1	271	232	251	11.7266
GCGCGCGGGGAAccggccg	chr3:195622702-195622958(-)$1	256	80	99	10.5893
CGAGCCCGCCCCCGUGCCA	chr1:32827762-32828056(-)$1	294	55	74	10.8971
GAGCGCACCUAGGUGGCUU	chr19:15348962-15349227(-)$1	265	38	57	8.5152
CUGUCCCCUUCUGGAGACA	chr19:1472446-1472699(-)$1	253	0	19	11.5235
CCAGUCAGGGAGCUGCUGU	chr4:760404-760675(-)$1	271	199	218	9.2948
AUGGGGCAGAGGUGCGGCU	chr22:50050722-50050956(-)$1	234	83	102	8.3139
UGGGGUGCCCGAGCCCCCA	chr14:105713508-105713747(-)$1	239	34	53	10.7527
AGAUGGGCUGGGGCACCAU	chr12:125398765-125399053(-)$1	288	213	232	10.5414
GGGCCGCCGGCAGGCCGGU	chr4:1228553-1228828(-)$1	275	117	136	10.9631
UGGUGACCUUCUGGAUGCC	chr21:45181606-45181866(+)$1	260	205	224	11.7645
GCACUGCGgggguggggug	chr16:1741690-1741952(+)$1	262	80	99	10.6323
CACCCUCUGGCGAGUUAGG	chr8:94752698-94752925(-)$1	227	183	202	10.3994
AGGUGAUUGUAAAGAGCUG	chr4:515963-516237(+)$1	274	33	52	12.7280
GCCCAGGUGUUAACAGGGC	chr21:45223926-45224155(+)$1	229	184	203	11.8969
aagacagcgucagccgagg	chr4:1229556-1229790(-)$1	234	155	174	11.7539
CAGCCAAGGCAACUGGGUU	chr21:46644312-46644583(+)$1	271	65	84	11.5521
GGCUUUGCGUCUGCGCGGC	chr1:144932077-144932378(-)$1	301	279	298	8.8154
CAGGCUUCUGCAGACGCCU	chr19:58991274-58991529(-)$1	255	150	169	11.1151
gugagcugugaucaugcca	chr19:58774618-58774902(+)$1	284	150	169	10.7800
GCGAAGCCCGGGGGUGCAG	chr4:762904-763141(-)$1	237	100	119	8.7384
CAGUGCUGCUGCCAGCACU	chr19:58990794-58991043(-)$1	249	217	236	8.0212
CCUGGGGCCUCAGCUGCAG	chr17:8378145-8378435(+)$1	290	246	265	9.4645
AGCGUAGCUCCUGCCGUUA	chr8:94752884-94753180(-)$1	296	189	208	10.8533
UUGAAUCCUCCUGGAAUUC	chr16:87732033-87732282(-)$1	249	11	30	9.9845
AAUUUUUAAAAGUAAGAGU	chr4:760575-760797(-)$1	222	129	148	7.9077
AGCCUUUCUGACGAUCAGC	chr16:89350227-89350495(-)$1	268	39	58	11.2635
CCUGCUGAAGUCUCCACAG	chr16:89346968-89347210(-)$1	242	197	216	12.5272
GAGCAGCGAAAACGUGGUU	chr16:75018775-75019059(-)$1	284	158	177	9.5254
AGCUGUGUACUCACAAAGC	chr6:3272344-3272605(+)$1	261	195	214	8.7892
GAGGGCUGUUUUCAAACCA	chr9:130214435-130214714(+)$1	279	173	192	11.6745
GACCCGGGGACGCCAUGGA	chr16:87736850-87737107(-)$1	257	223	242	11.9871
CCGCGUGGCUCCCCUGAGC	chr16:87736108-87736346(-)$1	238	60	79	11.7849
GUGGCAACUAUUGUGGCUA	chr17:62893266-62893544(-)$1	278	246	265	11.5235
ACAGCCCUGCCAAGGUGAA	chr19:5112764-5113027(+)$1	263	2	21	8.7266
AUGACCUGAAUCCAGCAUG	chr1:1028060-1028323(-)$1	263	180	199	8.6048
CAGCGCGCUGGUGCUGCGG	chr17:7477147-7477421(+)$1	274	60	79	11.7668
CCAUUCUGUAACCAAAAGG	chr7:1006174-1006476(-)$1	302	225	244	10.3859
UUGGGGAGACCGCUGCCUU	chr11:61583300-61583569(-)$1	269	75	94	12.1688
CCUGCUGAAGUCUCCACAG	chr16:89346809-89347062(-)$1	253	49	68	12.5272
CACCCUCUGGCGAGUUAGG	chr8:94752665-94752898(-)$1	233	156	175	10.3994
CCCAGAGCUGAGGCGGUGG	chr8:144343525-144343784(+)$1	259	7	26	12.6867
GGGCGGGCUGCGGCGGCCC	chr7:76255993-76256260(+)$1	267	190	209	11.8969
GUGUGGACAUAUGUGCAGG	chr4:763952-764205(-)$1	253	142	161	11.1528
ggcccAGUGUGGACGGGGC	chr7:32931169-32931435(-)$1	266	225	244	11.5235
GCCGGAAGCCCGCUGACCG	chr1:144931970-144932202(-)$1	232	0	19	10.7730
CGGGCAGUCUCUGCGAGCC	chr9:139715781-139716021(+)$1	240	193	212	12.2298
CACGGCGGGGCGUCUCCGG	chr19:1104362-1104635(+)$1	273	143	162	12.2740

#DB
(((((.((....)).)).)	chr6:3272140-3272364(+)$1	1	91	110	11.1765
((.(((((....)).))).	chr17:7477044-7477320(+)$1	1	163	182	11.7668
((((.(((....))).)))	chr1:25664360-25664659(-)$1	1	97	116	9.4358
((((.(((....)))...)	chr22:19120334-19120601(-)$1	1	17	36	9.0748
(.((..((....))..)))	chr1:144931690-144931961(-)$1	1	232	251	11.7266
))))))((....))(((((	chr3:195622702-195622958(-)$1	1	80	99	10.5893
(..((.((....)).))..	chr1:32827762-32828056(-)$1	1	55	74	10.8971
((((.(((....)))))))	chr19:15348962-15349227(-)$1	1	38	57	8.5152
(((((.((....)).))))	chr19:1472446-1472699(-)$1	1	0	19	11.5235
.(((.(((....)))))))	chr4:760404-760675(-)$1	1	199	218	9.2948
((((.(((....)))..))	chr22:50050722-50050956(-)$1	1	83	102	8.3139
(((((.((....)))))))	chr14:105713508-105713747(-)$1	1	34	53	10.7527
((((((((....)).))))	chr12:125398765-125399053(-)$1	1	213	232	10.5414
(.((((((....)).))))	chr4:1228553-1228828(-)$1	1	117	136	10.9631
)(((..((....))..)))	chr21:45181606-45181866(+)$1	1	205	224	11.7645
.((((.((....)).))))	chr16:1741690-1741952(+)$1	1	80	99	10.6323
((((((((....))..)))	chr8:94752698-94752925(-)$1	1	183	202	10.3994
.(((..((....)).))).	chr4:515963-516237(+)$1	1	33	52	12.7280
((((..((....)).))))	chr21:45223926-45224155(+)$1	1	184	203	11.8969
....(.((....)).)...	chr4:1229556-1229790(-)$1	1	155	174	11.7539
.((((.((....)).))))	chr21:46644312-46644583(+)$1	1	65	84	11.5521
((((.(((....))).)))	chr1:144932077-144932378(-)$1	1	279	298	8.8154
(((((.((....)).))))	chr19:58991274-58991529(-)$1	1	150	169	11.1151
(((.((((....)).))))	chr19:58774618-58774902(+)$1	1	150	169	10.7800
((...(((....)))....	chr4:762904-763141(-)$1	1	100	119	8.7384
.(((((((....)))))))	chr19:58990794-58991043(-)$1	1	217	236	8.0212
((((.(((....))).)))	chr17:8378145-8378435(+)$1	1	246	265	9.4645
((((..((....)))))))	chr8:94752884-94753180(-)$1	1	189	208	10.8533
((((((((....)).))))	chr16:87732033-87732282(-)$1	1	11	30	9.9845
.(((((((....)))))))	chr4:760575-760797(-)$1	1	129	148	7.9077
.((...((....))...))	chr16:89350227-89350495(-)$1	1	39	58	11.2635
((((..((....))..)))	chr16:89346968-89347210(-)$1	1	197	216	12.5272
.(((.(((....))).)))	chr16:75018775-75019059(-)$1	1	158	177	9.5254
((((.(((....))).)))	chr6:3272344-3272605(+)$1	1	195	214	8.7892
((((..((....))..)).	chr9:130214435-130214714(+)$1	1	173	192	11.6745
((.(((((....)).))).	chr16:87736850-87737107(-)$1	1	223	242	11.9871
..((..((....))...))	chr16:87736108-87736346(-)$1	1	60	79	11.7849
(((((.((....)).))))	chr17:62893266-62893544(-)$1	1	246	265	11.5235
((((((((....))).)..	chr19:5112764-5113027(+)$1	1	2	21	8.7266
(((..(((....)))))))	chr1:1028060-1028323(-)$1	1	180	199	8.6048
((.(((((....)).))).	chr17:7477147-7477421(+)$1	1	60	79	11.7668
((.((.((....)).))))	chr7:1006174-1006476(-)$1	1	225	244	10.3859
(.(((.((....)).))).	chr11:61583300-61583569(-)$1	1	75	94	12.1688
((((..((....))..)))	chr16:89346809-89347062(-)$1	1	49	68	12.5272
((((((((....))..)))	chr8:94752665-94752898(-)$1	1	156	175	10.3994
((((..((....))..)))	chr8:144343525-144343784(+)$1	1	7	26	12.6867
((((..((....)).))))	chr7:76255993-76256260(+)$1	1	190	209	11.8969
((.((.((....)).)).)	chr4:763952-764205(-)$1	1	142	161	11.1528
(((((.((....)).))))	chr7:32931169-32931435(-)$1	1	225	244	11.5235
.((((.((....))..)))	chr1:144931970-144932202(-)$1	1	0	19	10.7730
(((((.((....))..)))	chr9:139715781-139716021(+)$1	1	193	212	12.2298
(.(((.((....)).))))	chr19:1104362-1104635(+)$1	1	143	162	12.2740

#PSSM
e : 0.19	d : 0.15	f : 0.11	c : 0.09	! : 0.07	b : 0.07	[ : 0.05	g : 0.03	C : 0.03	: : 0.03	h : 0.03	# : 0.03	= : 0.03	
c : 0.21	d : 0.17	e : 0.17	g : 0.07	[ : 0.07	f : 0.07	a : 0.03	! : 0.03	h : 0.03	b : 0.03	= : 0.03	# : 0.01	
c : 0.23	d : 0.17	e : 0.15	[ : 0.09	g : 0.07	b : 0.07	f : 0.07	h : 0.03	! : 0.01	# : 0.01	" : 0.01	= : 0.01	
c : 0.26	d : 0.17	b : 0.13	e : 0.13	f : 0.07	g : 0.05	h : 0.03	" : 0.03	# : 0.01	[ : 0.01	! : 0.01	= : 0.01	
! : 0.23	[ : 0.17	b : 0.09	c : 0.09	e : 0.09	d : 0.07	g : 0.05	f : 0.03	h : 0.03	a : 0.03	" : 0.03	= : 0.01	
[ : 0.30	c : 0.28	! : 0.21	g : 0.05	h : 0.03	f : 0.01	d : 0.01	b : 0.01	e : 0.01	" : 0.01	
b : 0.73	c : 0.23	g : 0.03	
b : 0.73	c : 0.23	g : 0.03	
m : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
b : 0.73	c : 0.23	g : 0.03	
b : 0.73	c : 0.23	g : 0.03	
] : 0.44	c : 0.23	2 : 0.19	f : 0.03	g : 0.03	3 : 0.03	e : 0.01	
2 : 0.21	c : 0.13	] : 0.11	d : 0.11	e : 0.11	b : 0.09	f : 0.07	3 : 0.05	g : 0.03	a : 0.01	4 : 0.01	
c : 0.26	d : 0.15	b : 0.13	e : 0.13	3 : 0.07	f : 0.07	h : 0.03	g : 0.03	2 : 0.01	4 : 0.01	a : 0.01	= : 0.01	
c : 0.28	d : 0.15	e : 0.13	b : 0.09	f : 0.09	3 : 0.05	] : 0.03	h : 0.03	g : 0.03	2 : 0.01	4 : 0.01	= : 0.01	
d : 0.23	c : 0.17	e : 0.13	f : 0.09	] : 0.07	3 : 0.07	g : 0.05	b : 0.05	h : 0.03	2 : 0.01	4 : 0.01	= : 0.01	

#score	557.1730601563944
#seq	52
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF470JIH_PUS1_transcript_m2_run2.txt

#BEAR
::::::EEEEEKKEEEEE{BB:::::::	chrM:12065-12272(+)$1	207	54	82	15.4160
::::HHHHHHHH{EEEEE::::::::::	chrM:4302-4537(+)$1	235	15	43	14.7919
::::::EEEEEKKEEEEE{BB:::::::	chrM:12077-12280(+)$1	203	42	70	15.4160
::::A{FFFFFF{DDDD:::::::::::	chrM:12114-12334(+)$1	220	65	93	14.9168
qbb:HHHHHHHH{EEEEE::::::::::	chrM:4189-4420(+)$1	231	128	156	13.7346
::::::EEEEEKKEEEEE{BB:::::::	chrM:12080-12284(+)$1	204	39	67	15.4160
NNNNHHHHHHHH{EEEEE::::::::::	chrM:4220-4426(+)$1	206	97	125	14.9193
:BBEEEEEDDDD{DDDD:::::::::::	chrM:12084-12303(+)$1	219	95	123	12.9976
::CCC:FFFFFF{DDDD:::::::::::	chrM:12177-12416(+)$1	239	2	30	14.1369
::::::::DDDD{DDDD:::::::::::	chrM:12055-12259(+)$1	204	1	29	12.3464
::::GGGGGGGKKDDDD:::::::::::	chr11:65192427-65192647(+)$1	220	2	30	14.2685

#otherMatches

#Seq PSSM
AUUACCGGGUUUUCCUCUUGUAAAUAUA	chrM:12065-12272(+)$1	207	54	82	15.4160
ACCCCCUUAUUUcuaggacuaugagaau	chrM:4302-4537(+)$1	235	15	43	14.7919
AUUACCGGGUUUUCCUCUUGUAAAUAUA	chrM:12077-12280(+)$1	203	42	70	15.4160
AACAGAGGCUUACGACCCCUUAUUUACC	chrM:12114-12334(+)$1	220	65	93	14.9168
ACCCCCUUAUUUcuaggacuaugagaau	chrM:4189-4420(+)$1	231	128	156	13.7346
AUUACCGGGUUUUCCUCUUGUAAAUAUA	chrM:12080-12284(+)$1	204	39	67	15.4160
ACCCCCUUAUUUcuaggacuaugagaau	chrM:4220-4426(+)$1	206	97	125	14.9193
AACAGAGGCUUACGACCCCUUAUUUACC	chrM:12084-12303(+)$1	219	95	123	12.9976
AACAGAGGCUUACGACCCCUUAUUUACC	chrM:12177-12416(+)$1	239	2	30	14.1369
GAAAACACCCUCAUGUUCAUACACCUAU	chrM:12055-12259(+)$1	204	1	29	12.3464
GUACUGGGAGGGAUGAGGGUGAAGAAGG	chr11:65192427-65192647(+)$1	220	2	30	14.2685

#DB
......(((((..(((((.((.......	chrM:12065-12272(+)$1	1	54	82	15.4160
....((((((((.(((((..........	chrM:4302-4537(+)$1	1	15	43	14.7919
......(((((..(((((.((.......	chrM:12077-12280(+)$1	1	42	70	15.4160
....(.((((((.((((...........	chrM:12114-12334(+)$1	1	65	93	14.9168
.)).((((((((.(((((..........	chrM:4189-4420(+)$1	1	128	156	13.7346
......(((((..(((((.((.......	chrM:12080-12284(+)$1	1	39	67	15.4160
....((((((((.(((((..........	chrM:4220-4426(+)$1	1	97	125	14.9193
.)))))))((((.((((...........	chrM:12084-12303(+)$1	1	95	123	12.9976
..(((.((((((.((((...........	chrM:12177-12416(+)$1	1	2	30	14.1369
........((((.((((...........	chrM:12055-12259(+)$1	1	1	29	12.3464
....(((((((..((((...........	chr11:65192427-65192647(+)$1	1	2	30	14.2685

#PSSM
: : 0.81	q : 0.09	N : 0.09	
: : 0.72	b : 0.09	N : 0.09	B : 0.09	
: : 0.63	b : 0.09	N : 0.09	B : 0.09	C : 0.09	
: : 0.72	N : 0.09	E : 0.09	C : 0.09	
: : 0.36	H : 0.27	A : 0.09	E : 0.09	C : 0.09	G : 0.09	
: : 0.45	H : 0.27	{ : 0.09	E : 0.09	G : 0.09	
E : 0.36	H : 0.27	F : 0.18	: : 0.09	G : 0.09	
E : 0.36	H : 0.27	F : 0.18	: : 0.09	G : 0.09	
E : 0.27	H : 0.27	F : 0.18	D : 0.18	G : 0.09	
E : 0.27	H : 0.27	F : 0.18	D : 0.18	G : 0.09	
E : 0.27	H : 0.27	F : 0.18	D : 0.18	G : 0.09	
K : 0.36	H : 0.27	F : 0.18	D : 0.18	
{ : 0.63	K : 0.36	
E : 0.54	D : 0.45	
E : 0.54	D : 0.45	
E : 0.54	D : 0.45	
E : 0.54	D : 0.45	
E : 0.54	: : 0.45	
: : 0.72	{ : 0.27	
: : 0.72	B : 0.27	
: : 0.72	B : 0.27	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	

#score	158.36063850007284
#seq	11
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_transcript_m1_run1.txt

#BEAR
e[ccc"""gggggggnnnnnggggggg22ccc333eeee	chr8:87573358-87573660(+)$1	302	132	171	12.3544
dddd$$$$$gggggggooooooggggggg333ddddccc	chr15:64673464-64673705(-)$1	241	30	69	13.9799
=========="""cccmmmmccc22==========::hh	chr2:177202399-177202679(+)$1	280	123	162	12.6239
ccc[ccc[gggggggrrrrrrrrrggggggg]ccc]ccc	chrX:24095143-24095381(+)$1	238	68	107	12.3431
ff!!eeeee####cccooooooccc]eeeee22ffffff	chr3:10168053-10168321(+)$1	268	156	195	14.3746
dddd[bbbbccc[bboooooobb]ccc22bb333bb]dd	chr15:85213060-85213314(-)$1	254	65	104	12.2263
ccc:::==========oooooo==========cccdddd	chrX:119007240-119007456(+)$1	216	138	177	13.4487
c!!bb"""ccc!!cccooooooccc333ccc4444bb22	chr1:203838986-203839202(+)$1	216	67	106	16.5588
EE==========[cccrrrrrrrrrccc]==========	chr16:87437382-87437639(+)$1	257	3	42	13.4624
!!eeeeebb"""cccrrrrrrrrrccc4444bb]eeeee	chr6:160199814-160200090(-)$1	276	125	164	12.4587
c!!ggggggg[dddd[ccclllccc]dddd]ggggggg]	chr14:102547721-102547930(-)$1	209	86	125	11.4993
dddd[==========rrrrrrrrr==========ddddH	chr4:174298424-174298697(+)$1	273	116	155	13.1919
ffffff!!a!!eeeeeooooooeeeee22a]ffffff:H	chr15:83041093-83041334(-)$1	241	2	41	11.6918
=========####ccclllccc333==============	chr14:101201150-101201431(+)$1	281	161	200	16.3242
g"""dddd!!bb!!ccclllccc22bb22dddd22gggg	chr10:43326657-43326908(+)$1	251	71	110	11.4270
!ccc"""eeeee!!bboooooobb]eeeee4444ccc22	chr2:217070143-217070417(+)$1	274	158	197	13.6147
#ccc"""eeeee[ccclllccc]eeeee22ccc333===	chr10:133781818-133782054(-)$1	236	140	179	12.5799
=========eeeeeqqqqqqqqeeeee22==========	chr7:54819869-54820114(-)$1	245	73	112	12.3691
####aggggggg[addddllldddd]a]ggggggg]a44	chr11:62432500-62432770(-)$1	270	151	190	12.2684
iiiiiii####cccssssssssssccc333iiiiiiiii	chrX:64961470-64961682(+)$1	212	105	144	13.6753
dddd[ccc!!ggggggglllggggggg22ccc]ddddcc	chr2:239078958-239079233(-)$1	275	132	171	11.7773
ccc[eeeee!!bb!!aooooooa22bb22eeeee]ccc]	chr16:57505016-57505284(+)$1	268	20	59	13.6612
!!==========[ddddllldddd==========ccc]b	chr10:120927685-120927964(-)$1	279	150	189	14.5343
c[============[aooooooa]============]cc	chr20:18744058-18744343(+)$1	285	157	196	18.3358
####ccc"""ddddooooooddddccc22eeeee]ccc]	chr2:55199699-55200009(-)$1	310	118	157	13.1522
====!!ccc[ccc[ammmmaccc]ccc22==========	chr1:109964381-109964649(-)$1	268	24	63	13.7206
ggggggg!!ccc"""ammmma4444ccc333ggggggg:	chr2:148692800-148693072(-)$1	272	106	145	12.7557
feeeee[===========mmmm===========]eeeee	chr2:171822676-171822951(+)$1	275	225	264	13.1328
$$$bb[bb[ccc[cccooooooccc]ccc]bb]bb22ff	chr16:70557640-70557932(+)$1	292	94	133	13.2892
==========ddddqqqqqqqqdddd333==========	chr1:19630382-19630648(-)$1	266	71	110	12.8478
bb[eeeee[bb!!cccooooooccc22bbeeeee]bbbb	chr22:19163297-19163521(-)$1	224	183	222	12.2371
hhhhhh"""ccc[cccooooooccc]ccc333hhhhhhh	chr11:75113345-75113556(+)$1	211	106	145	15.0088
eeeee[ffffff[cccoooooocccffffff]eeeee22	chr12:123994543-123994823(-)$1	280	133	172	13.1424
eeee!!ffffff[cccooooooccc]ffffff22eeeee	chr15:45009865-45010107(+)$1	242	10	49	13.6978
ffffff[===========mmmm===========ffffff	chr5:145890861-145891109(+)$1	248	114	153	12.1741
hhhhhh"""ccc[cccooooooccc]ccc333hhhhhhh	chr11:75113323-75113541(+)$1	218	128	167	15.0088
=========^^^^^^^^^^^^^^^^^^^^==========	chrX:53559678-53559963(-)$1	285	225	264	11.8564
dd[ccc!!ccc!!cccooooooccc]ccc22ccc]dddd	chr15:23003128-23003379(+)$1	251	34	73	15.6583
eee[bb[ccc[a[aooooooa]a]ccc22bb333eeeee	chr11:32610038-32610306(+)$1	268	228	267	13.8617
e[bb[bb####eeeeeooooooeeeee333bbbb]eeee	chr7:27565263-27565546(-)$1	283	138	177	13.7873
%%%%%%ccc####cccooooooccc333ccc22hhhhhh	chr19:10800092-10800335(+)$1	243	139	178	12.3489
gggggggeeeee[cccnnnnnccc]eeeee=========	chr1:40538025-40538292(+)$1	267	126	165	13.1219
!!ccc[dddd"""cccooooooccc4444dddd]ccc44	chr3:113530376-113530651(+)$1	275	149	188	15.7528
"""ggggggg[ggggggglllgggggggggggggga]gg	chr10:75012128-75012429(-)$1	301	47	86	12.4695
b"""eeeee"""fffffflllffffff4444eeeee333	chr5:170837665-170837909(+)$1	244	196	235	11.3154
==dddd####bb[cccnnnnncccbb4444dddd]====	chr6:170881350-170881604(+)$1	254	139	178	12.7774
EE:==========[bboooooobb22==========ddd	chr1:26231061-26231313(-)$1	252	46	85	13.0788
eeee[ccc[eeeee[aooooooa]eeeee]ccc]eeeee	chr11:61066880-61067151(-)$1	271	215	254	13.5393
dd[dddd$$$$$ddddoooooodddd333dddd]ddddd	chr12:6975426-6975681(+)$1	255	27	66	12.9747
d!!ccc"""gggggggooooooggggggg333ccc22dd	chr17:74560137-74560369(+)$1	232	23	62	15.6493
[ddddeeeee[eeeeeooooooeeeee333eeeee]ddd	chr3:179341952-179342211(+)$1	259	189	228	13.2680
iiiiii"""ccc[cccooooooccc333ccc333iiiii	chr1:110135064-110135306(+)$1	242	41	80	18.7783
=========!!a[cccooooooccc]a22==========	chr3:142775227-142775470(+)$1	243	141	180	19.7889
========####ffffffnnnnnffffff==========	chrX:12841040-12841341(+)$1	301	192	231	12.5261
ggg####ccc"""ddddmmmmdddd333ccc333ggggg	chr2:84650632-84650895(-)$1	263	49	88	13.0468

#otherMatches

#Seq PSSM
GCCAGAAGUUUGAUGGAACGUGUUAGAAACUGUUUUGUG	chr8:87573358-87573660(+)$1	302	132	171	12.3544
GACCAAUAUAAACUGUGGCGGGAUAGUUUUCGGGUCCUU	chr15:64673464-64673705(-)$1	241	30	69	13.9799
AUGUAUGUGCUUUAUAUUGUUAUUUGUGUAUACAUUAAA	chr2:177202399-177202679(+)$1	280	123	162	12.6239
uguuuuUgagucuggcucugucacccaggcuggagugca	chrX:24095143-24095381(+)$1	238	68	107	12.3431
AGUAACAUUUUAUACAUCUACUUGUCAAUGUAUUUGAGA	chr3:10168053-10168321(+)$1	268	156	195	14.3746
GAAGCCUGCCUUGCUGUUCCUGGGAAGAUGCCAUAGUUU	chr15:85213060-85213314(-)$1	254	65	104	12.2263
GCCUUUUGCCAGGGUUGAGGUGGGUUCUGGUAAUGCCUU	chrX:119007240-119007456(+)$1	216	138	177	13.4487
CAACUAGAAAUGAUCAAUGAAGUGAGAAAUUGUUGAGAA	chr1:203838986-203839202(+)$1	216	67	106	16.5588
AAGGAAACUUGAAUAAUUUAUAAUUUUGAUCGAGUUUCU	chr16:87437382-87437639(+)$1	257	3	42	13.4624
AGGAAAUGGUUUCCAUCUGUACUUUGGUCCUCUGAUUUC	chr6:160199814-160200090(-)$1	276	125	164	12.4587
UUUCAUGUUGGUUUAUUUUCACAGAUUGGGGUAACGUGC	chr14:102547721-102547930(-)$1	209	86	125	11.4993
GAAAUGUUCUUUGUGUAUUUUUUCUACAGAGGAUUUUCU	chr4:174298424-174298697(+)$1	273	116	155	13.1919
UCAACGUUGUUAUCCAGGAGAAUGGGUCUCUUGUUGAAA	chr15:83041093-83041334(-)$1	241	2	41	11.6918
UGUUCGCUAUCUCUUGUGUCAAAUCUGGUGAACGCUACG	chr14:101201150-101201431(+)$1	281	161	200	16.3242
UUGGGGCUGUCGAGAUUUAAAGUGAUGUAAGCUGUGGUU	chr10:43326657-43326908(+)$1	251	71	110	11.4270
AUGGCAUGGUUAUUGAUGAGUUUCUUAACCCUUUCCAGA	chr2:217070143-217070417(+)$1	274	158	197	13.6147
CUGUAAAUGCUGCGUUCCUAAUUUAGUAAAAUAAAAGAA	chr10:133781818-133782054(-)$1	236	140	179	12.5799
ACUCACAGAAUACAAAUUUGCCUGUAUGUUUUGUGGGUU	chr7:54819869-54820114(-)$1	245	73	112	12.3691
UCAACCGGCCCCGAACGGUGACUGUGUGGGGGCCGCGAC	chr11:62432500-62432770(-)$1	270	151	190	12.2684
UCCUAUAUUGGCUAAAUUGAAACCUGGAAUUGUGGGGCA	chrX:64961470-64961682(+)$1	212	105	144	13.6753
UUGUGUACUCCUGUGGGACUCCCAUGGUUGUAAAUAAAG	chr2:239078958-239079233(-)$1	275	132	171	11.7773
GCUUGCCUGCUUCAGCAAAAACGGAGAUUCAGGCCAGCA	chr16:57505016-57505284(+)$1	268	20	59	13.6612
UAGUUGCUAGUACAAGGAAUCCUUUAUUGGUAACAUCUU	chr10:120927685-120927964(-)$1	279	150	189	14.5343
GGGCGGGUGCGCAUGUGGUAGAAGGUGUGCGCUCGUGCC	chr20:18744058-18744343(+)$1	285	157	196	18.3358
UGAUGCAGAUUUUCUGAAAUGAAAUGUUUGUUUAGACGA	chr2:55199699-55200009(-)$1	310	118	157	13.1522
UUGUCAAGGAACUUGAAUUCAGUGUCUACAUGGCUAGUU	chr1:109964381-109964649(-)$1	268	24	63	13.7206
GUGAGACUUGCCCAUCUACUGUCUUGGCUGUGUCUUGCC	chr2:148692800-148693072(-)$1	272	106	145	12.7557
ACUGCCGUUCCUGGGGGUGUGCAUCUUCGGGAAAGGUGG	chr2:171822676-171822951(+)$1	275	225	264	13.1328
CUAAUGGCGGACGCCAGUAUGUUGGAGUUGGUGGUGGCU	chr16:70557640-70557932(+)$1	292	94	133	13.2892
UGCUCCCUAUUCACUUUACACUGUGAAAGGUGGGGGGUG	chr1:19630382-19630648(-)$1	266	71	110	12.8478
GGCCUGGGUCCUCGGCCCUGUAGCCCUGGCCCGGUCCCA	chr22:19163297-19163521(-)$1	224	183	222	12.2371
UCUGCGUUACAAACUCCUAGGAGGGCUUGCUGUGCGGAG	chr11:75113345-75113556(+)$1	211	106	145	15.0088
AAGCGGGGGGCCCGGCUUGGUUGCCGGUUCUGUGCUUAG	chr12:123994543-123994823(-)$1	280	133	172	13.1424
UAUACACUUACACUUUAUGCACAAAAUGUAGGGUUAUAA	chr15:45009865-45010107(+)$1	242	10	49	13.6978
UUUGAAUGUUAAACUUUGUUGCUAAAGUUUAAUUUUAAG	chr5:145890861-145891109(+)$1	248	114	153	12.1741
UCUGCGUUACAAACUCCUAGGAGGGCUUGCUGUGCGGAG	chr11:75113323-75113541(+)$1	218	128	167	15.0088
GAGUUUUUUUCAAACUUAAAAAAAAAAACAAAAAACUCU	chrX:53559678-53559963(-)$1	285	225	264	11.8564
UAAAAACUUAAUUUUAUAAAAUUGACUUAUUUUUCUAGA	chr15:23003128-23003379(+)$1	251	34	73	15.6583
GAGACUGCAGUUGUAAGUUAAGAUCUGAAAGAAACUCAG	chr11:32610038-32610306(+)$1	268	228	267	13.8617
UCUGUGUCCAUCAGGAAGUUUGUCCUGUUAACCAAAUGG	chr7:27565263-27565546(-)$1	283	138	177	13.7873
GUUUUUGAGUUUUUGCAGUUCAGUAUCCCUCUGUCUAUU	chr19:10800092-10800335(+)$1	243	139	178	12.3489
UUUCAGUUGUUUUUCCCUCUAGGACAAACACUUACCAAA	chr1:40538025-40538292(+)$1	267	126	165	13.1219
AUGCUAGCGAACCUAUGCUCAGAUAUUCAUCGUAAGUCU	chr3:113530376-113530651(+)$1	275	149	188	15.7528
UUUUCGGGCUUGUACCGCUUGGCGGUGCGGCCUGGUGUC	chr10:75012128-75012429(-)$1	301	47	86	12.4695
AAUAAAACUCAGUAUUUUAAUAAAGUAGCACGGUUUCUA	chr5:170837665-170837909(+)$1	244	196	235	11.3154
CCUUCUGUAAGUGCCCACCGCGGGAUGCCGGGAAGGGGC	chr6:170881350-170881604(+)$1	254	139	178	12.7774
AAAGAAAGUGAUUGCAUGUUUUUGAAAAUCAUUUUCAGG	chr1:26231061-26231313(-)$1	252	46	85	13.0788
AAUAUAAGAAGAAAGGUACAUUUGUUUUUGCUUUUAUUC	chr11:61066880-61067151(-)$1	271	215	254	13.5393
GGCCGGCCACCUGUCUGUAAGGAGACUUUGUUGCUUCCC	chr12:6975426-6975681(+)$1	255	27	66	12.9747
uuuaaauuuuuuuucauuuuuuugagagguuuuuuuugu	chr17:74560137-74560369(+)$1	232	23	62	15.6493
UAUAGUAUUUUGUACAAAUGCCUGUACUGUAGAUGUCUG	chr3:179341952-179342211(+)$1	259	189	228	13.2680
UUAAUUGACAUGAGAUGCUAAAGUCAGACAUUGGAAUUG	chr1:110135064-110135306(+)$1	242	41	80	18.7783
CAAAAAAUCAAAUGAAAGAGCAUUCCUGGGGUUUUUUGU	chr3:142775227-142775470(+)$1	243	141	180	19.7889
GUAUAUAAUUUCAUUGUGGAAGUCAUAGUUUAUAUAUUU	chrX:12841040-12841341(+)$1	301	192	231	12.5261
UGUGGAAUGGAUCACGUAGACAUGUAACCCAGCAGCAGU	chr2:84650632-84650895(-)$1	263	49	88	13.0468

#DB
(.(((...(((((((.....)))))))..)))...))))	chr8:87573358-87573660(+)$1	1	132	171	12.3544
((((.....(((((((......)))))))...)))))))	chr15:64673464-64673705(-)$1	1	30	69	13.9799
((((((((((...(((....)))..))))))))))..((	chr2:177202399-177202679(+)$1	1	123	162	12.6239
(((.(((.(((((((.........))))))).))).)))	chrX:24095143-24095381(+)$1	1	68	107	12.3431
((..(((((....(((......))).)))))..))))))	chr3:10168053-10168321(+)$1	1	156	195	14.3746
((((.(((((((.((......)).)))..))...)).))	chr15:85213060-85213314(-)$1	1	65	104	12.2263
)))...((((((((((......))))))))))(((((((	chrX:119007240-119007456(+)$1	1	138	177	13.4487
(..((...(((..(((......)))...)))....))..	chr1:203838986-203839202(+)$1	1	67	106	16.5588
((((((((((((.(((.........))).))))))))))	chr16:87437382-87437639(+)$1	1	3	42	13.4624
..(((((((...(((.........)))....)).)))))	chr6:160199814-160200090(-)$1	1	125	164	12.4587
(..(((((((.((((.(((...))).)))).))))))).	chr14:102547721-102547930(-)$1	1	86	125	11.4993
((((.((((((((((.........)))))))))))))))	chr4:174298424-174298697(+)$1	1	116	155	13.1919
((((((..(..(((((......)))))..).)))))).(	chr15:83041093-83041334(-)$1	1	2	41	11.6918
(((((((((....(((...)))...))))))))))))))	chr14:101201150-101201431(+)$1	1	161	200	16.3242
(...((((..((..(((...)))..))..))))..))))	chr10:43326657-43326908(+)$1	1	71	110	11.4270
.(((...(((((..((......)).)))))....)))..	chr2:217070143-217070417(+)$1	1	158	197	13.6147
.(((...(((((.(((...))).)))))..)))...)))	chr10:133781818-133782054(-)$1	1	140	179	12.5799
((((((((((((((........)))))..))))))))))	chr7:54819869-54820114(-)$1	1	73	112	12.3691
....((((((((.(((((...)))).).))))))).)..	chr11:62432500-62432770(-)$1	1	151	190	12.2684
(((((((....(((..........)))...)))))))))	chrX:64961470-64961682(+)$1	1	105	144	13.6753
((((.(((..(((((((...)))))))..))).))))((	chr2:239078958-239079233(-)$1	1	132	171	11.7773
(((.(((((..((..(......)..))..))))).))).	chr16:57505016-57505284(+)$1	1	20	59	13.6612
..((((((((((.((((...))))))))))))))))).)	chr10:120927685-120927964(-)$1	1	150	189	14.5343
(.((((((((((((.(......).)))))))))))).))	chr20:18744058-18744343(+)$1	1	157	196	18.3358
....(((...((((......)))))))..))))).))).	chr2:55199699-55200009(-)$1	1	118	157	13.1522
((((..(((.(((.(....)))).)))..))))))))))	chr1:109964381-109964649(-)$1	1	24	63	13.7206
(((((((..(((...(....)....)))...))))))).	chr2:148692800-148693072(-)$1	1	106	145	12.7557
)(((((.(((((((((((....))))))))))).)))))	chr2:171822676-171822951(+)$1	1	225	264	13.1328
...((.((.(((.(((......))).))).)).))..))	chr16:70557640-70557932(+)$1	1	94	133	13.2892
((((((((((((((........))))...))))))))))	chr1:19630382-19630648(-)$1	1	71	110	12.8478
((.(((((.((..(((......)))..))))))).))))	chr22:19163297-19163521(-)$1	1	183	222	12.2371
((((((...(((.(((......))).)))...)))))))	chr11:75113345-75113556(+)$1	1	106	145	15.0088
(((((.((((((.(((......))))))))).)))))..	chr12:123994543-123994823(-)$1	1	133	172	13.1424
((((..((((((.(((......))).))))))..)))))	chr15:45009865-45010107(+)$1	1	10	49	13.6978
((((((.(((((((((((....)))))))))))))))))	chr5:145890861-145891109(+)$1	1	114	153	12.1741
((((((...(((.(((......))).)))...)))))))	chr11:75113323-75113541(+)$1	1	128	167	15.0088
(((((((((....................))))))))))	chrX:53559678-53559963(-)$1	1	225	264	11.8564
((.(((..(((..(((......))).)))..))).))))	chr15:23003128-23003379(+)$1	1	34	73	15.6583
(((.((.(((.(.(......).).)))..))...)))))	chr11:32610038-32610306(+)$1	1	228	267	13.8617
(.((.((....(((((......)))))...)))).))))	chr7:27565263-27565546(-)$1	1	138	177	13.7873
......(((....(((......)))...)))..))))))	chr19:10800092-10800335(+)$1	1	139	178	12.3489
)))))))(((((.(((.....))).)))))(((((((((	chr1:40538025-40538292(+)$1	1	126	165	13.1219
..(((.((((...(((......)))....)))).)))..	chr3:113530376-113530651(+)$1	1	149	188	15.7528
...(((((((.(((((((...))))))))))))))).))	chr10:75012128-75012429(-)$1	1	47	86	12.4695
(...(((((...((((((...))))))....)))))...	chr5:170837665-170837909(+)$1	1	196	235	11.3154
((((((....((.(((.....)))))....)))).))))	chr6:170881350-170881604(+)$1	1	139	178	12.7774
((.((((((((((.((......))..))))))))))(((	chr1:26231061-26231313(-)$1	1	46	85	13.0788
((((.(((.(((((.(......).))))).))).)))))	chr11:61066880-61067151(-)$1	1	215	254	13.5393
((.((((.....((((......))))...)))).)))))	chr12:6975426-6975681(+)$1	1	27	66	12.9747
(..(((...(((((((......)))))))...)))..))	chr17:74560137-74560369(+)$1	1	23	62	15.6493
.(((((((((.(((((......)))))...))))).)))	chr3:179341952-179342211(+)$1	1	189	228	13.2680
((((((...(((.(((......)))...)))...)))))	chr1:110135064-110135306(+)$1	1	41	80	18.7783
(((((((((..(.(((......))).)..))))))))))	chr3:142775227-142775470(+)$1	1	141	180	19.7889
((((((((....((((((.....))))))))))))))))	chrX:12841040-12841341(+)$1	1	192	231	12.5261
(((....(((...((((....))))...)))...)))))	chr2:84650632-84650895(-)$1	1	49	88	13.0468

#PSSM
= : 0.16	d : 0.12	e : 0.10	c : 0.10	f : 0.07	! : 0.07	g : 0.07	# : 0.05	E : 0.03	i : 0.03	b : 0.03	h : 0.03	$ : 0.01	% : 0.01	" : 0.01	[ : 0.01	
= : 0.16	d : 0.12	! : 0.10	c : 0.09	e : 0.09	[ : 0.05	f : 0.05	" : 0.05	g : 0.05	E : 0.03	# : 0.03	i : 0.03	h : 0.03	$ : 0.01	b : 0.01	% : 0.01	
= : 0.20	c : 0.12	d : 0.10	e : 0.10	! : 0.07	" : 0.05	g : 0.05	[ : 0.05	f : 0.03	# : 0.03	i : 0.03	h : 0.03	$ : 0.01	b : 0.01	% : 0.01	: : 0.01	
= : 0.21	d : 0.12	c : 0.10	e : 0.10	g : 0.07	[ : 0.05	b : 0.05	# : 0.05	f : 0.03	" : 0.03	i : 0.03	h : 0.03	! : 0.01	: : 0.01	% : 0.01	
= : 0.20	e : 0.12	c : 0.10	[ : 0.09	g : 0.07	d : 0.07	b : 0.05	f : 0.03	" : 0.03	i : 0.03	! : 0.03	h : 0.03	$ : 0.01	: : 0.01	a : 0.01	% : 0.01	# : 0.01	
= : 0.21	e : 0.12	c : 0.10	g : 0.09	" : 0.07	b : 0.05	d : 0.05	[ : 0.05	f : 0.03	i : 0.03	! : 0.03	h : 0.03	$ : 0.01	: : 0.01	% : 0.01	# : 0.01	
= : 0.23	" : 0.14	c : 0.10	e : 0.10	g : 0.09	b : 0.05	d : 0.05	[ : 0.05	! : 0.03	f : 0.03	# : 0.03	$ : 0.01	i : 0.01	
= : 0.27	e : 0.14	" : 0.12	c : 0.10	b : 0.05	g : 0.05	! : 0.05	# : 0.05	$ : 0.03	d : 0.03	f : 0.03	[ : 0.01	
= : 0.25	e : 0.12	c : 0.10	g : 0.09	" : 0.09	# : 0.07	! : 0.05	[ : 0.05	$ : 0.03	b : 0.03	f : 0.03	a : 0.01	d : 0.01	
= : 0.18	c : 0.18	g : 0.12	# : 0.12	e : 0.10	! : 0.09	" : 0.05	f : 0.03	[ : 0.01	b : 0.01	^ : 0.01	d : 0.01	$ : 0.01	
c : 0.16	= : 0.14	g : 0.10	# : 0.10	" : 0.09	e : 0.09	[ : 0.07	! : 0.05	b : 0.05	d : 0.03	f : 0.03	^ : 0.01	$ : 0.01	
c : 0.14	= : 0.14	e : 0.14	g : 0.12	" : 0.09	# : 0.07	! : 0.05	d : 0.05	b : 0.05	f : 0.03	a : 0.03	^ : 0.01	$ : 0.01	
[ : 0.27	g : 0.10	= : 0.10	! : 0.09	e : 0.09	" : 0.07	d : 0.07	# : 0.05	c : 0.05	f : 0.03	b : 0.01	^ : 0.01	
c : 0.38	g : 0.10	d : 0.10	= : 0.09	e : 0.09	! : 0.05	a : 0.03	[ : 0.03	f : 0.03	b : 0.01	" : 0.01	^ : 0.01	
c : 0.38	g : 0.10	d : 0.09	= : 0.07	b : 0.05	e : 0.05	q : 0.03	[ : 0.03	o : 0.03	f : 0.03	s : 0.01	! : 0.01	a : 0.01	" : 0.01	^ : 0.01	
c : 0.36	g : 0.07	d : 0.07	a : 0.07	r : 0.05	o : 0.05	= : 0.05	e : 0.05	b : 0.03	q : 0.03	f : 0.03	n : 0.01	[ : 0.01	s : 0.01	m : 0.01	^ : 0.01	
o : 0.50	r : 0.07	n : 0.05	m : 0.05	d : 0.05	c : 0.03	l : 0.03	q : 0.03	g : 0.03	= : 0.03	f : 0.03	s : 0.01	^ : 0.01	
o : 0.50	l : 0.09	m : 0.07	r : 0.07	n : 0.05	q : 0.03	= : 0.03	f : 0.03	c : 0.01	d : 0.01	s : 0.01	^ : 0.01	g : 0.01	
o : 0.50	l : 0.14	m : 0.10	n : 0.07	r : 0.07	q : 0.03	c : 0.01	s : 0.01	^ : 0.01	
o : 0.50	l : 0.12	m : 0.09	n : 0.07	r : 0.07	c : 0.03	q : 0.03	s : 0.01	a : 0.01	^ : 0.01	
o : 0.47	c : 0.09	r : 0.07	l : 0.07	m : 0.05	n : 0.05	g : 0.03	q : 0.03	d : 0.03	a : 0.03	s : 0.01	^ : 0.01	
o : 0.45	c : 0.12	r : 0.07	d : 0.07	g : 0.05	q : 0.03	m : 0.03	b : 0.01	l : 0.01	s : 0.01	4 : 0.01	^ : 0.01	] : 0.01	f : 0.01	n : 0.01	
c : 0.34	d : 0.10	g : 0.09	r : 0.07	e : 0.07	a : 0.07	b : 0.05	= : 0.05	3 : 0.01	] : 0.01	s : 0.01	4 : 0.01	^ : 0.01	f : 0.01	n : 0.01	
c : 0.29	d : 0.10	g : 0.09	] : 0.09	e : 0.09	r : 0.07	2 : 0.05	= : 0.05	b : 0.03	f : 0.03	3 : 0.01	s : 0.01	4 : 0.01	^ : 0.01	
c : 0.36	g : 0.10	= : 0.10	e : 0.10	2 : 0.07	d : 0.07	] : 0.03	f : 0.03	r : 0.01	3 : 0.01	4 : 0.01	^ : 0.01	b : 0.01	
] : 0.16	= : 0.14	c : 0.14	e : 0.14	g : 0.10	3 : 0.07	b : 0.05	f : 0.05	d : 0.03	2 : 0.03	^ : 0.01	4 : 0.01	
c : 0.21	= : 0.16	e : 0.16	g : 0.10	3 : 0.10	f : 0.07	b : 0.03	a : 0.03	4 : 0.03	d : 0.01	2 : 0.01	^ : 0.01	
2 : 0.20	= : 0.16	3 : 0.16	c : 0.10	e : 0.09	g : 0.07	4 : 0.07	f : 0.05	d : 0.01	] : 0.01	b : 0.01	^ : 0.01	
2 : 0.21	= : 0.16	c : 0.14	3 : 0.10	g : 0.09	e : 0.07	4 : 0.07	f : 0.05	] : 0.01	d : 0.01	b : 0.01	^ : 0.01	
= : 0.29	3 : 0.14	c : 0.10	e : 0.10	d : 0.07	g : 0.05	4 : 0.05	b : 0.03	2 : 0.03	] : 0.03	f : 0.03	a : 0.01	
= : 0.30	c : 0.14	3 : 0.09	e : 0.09	b : 0.07	d : 0.07	g : 0.05	4 : 0.05	] : 0.03	f : 0.03	i : 0.01	2 : 0.01	
= : 0.30	3 : 0.14	c : 0.09	e : 0.09	g : 0.07	d : 0.07	b : 0.05	] : 0.03	2 : 0.03	4 : 0.03	f : 0.03	i : 0.01	
= : 0.29	c : 0.10	e : 0.10	3 : 0.09	d : 0.09	g : 0.07	2 : 0.05	4 : 0.03	b : 0.03	] : 0.03	h : 0.03	f : 0.01	i : 0.01	
= : 0.25	3 : 0.10	e : 0.10	] : 0.09	c : 0.07	g : 0.07	d : 0.05	f : 0.05	h : 0.05	4 : 0.03	2 : 0.03	b : 0.03	i : 0.01	
= : 0.21	e : 0.14	c : 0.10	] : 0.10	g : 0.09	d : 0.07	f : 0.05	h : 0.05	3 : 0.03	b : 0.03	i : 0.03	4 : 0.01	2 : 0.01	
= : 0.21	e : 0.16	d : 0.10	c : 0.09	g : 0.07	] : 0.05	f : 0.05	b : 0.05	h : 0.05	i : 0.03	2 : 0.03	: : 0.01	3 : 0.01	a : 0.01	
= : 0.20	e : 0.14	c : 0.12	d : 0.12	g : 0.07	f : 0.05	] : 0.05	h : 0.05	b : 0.03	i : 0.03	2 : 0.03	: : 0.01	a : 0.01	3 : 0.01	
= : 0.20	d : 0.14	e : 0.12	c : 0.10	g : 0.09	h : 0.07	f : 0.05	2 : 0.05	4 : 0.03	i : 0.03	: : 0.01	] : 0.01	b : 0.01	3 : 0.01	
= : 0.20	e : 0.12	d : 0.12	c : 0.07	h : 0.07	f : 0.05	2 : 0.05	] : 0.05	g : 0.05	H : 0.03	4 : 0.03	i : 0.03	b : 0.03	: : 0.01	3 : 0.01	

#score	746.5505360498091
#seq	55
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_UTR_m2_run1.txt

#BEAR
eeeeeooooooeeee	chr16:89350981-89351318(-)$1	337	120	135	9.8135
eeeeeooooooeeee	chr1:2125078-2125387(-)$1	309	255	270	9.8135
eeeeennnnneeeee	chr15:42129578-42129861(+)$1	283	152	167	9.1976
eeeeemmmmeeeee:	chr12:72056719-72057048(-)$1	329	177	192	10.2831
ee[bbmmmmbbeeee	chr12:132195558-132195916(+)$1	358	332	347	6.9077
eeeeemmmmeeeee:	chr1:28834539-28834751(+)$1	212	2	17	10.2831
eeeeemmmmeeeee:	chr3:184099255-184099512(+)$1	257	139	154	10.2831
eeeeennnnneeeee	chr17:74303484-74303752(-)$1	268	10	25	9.1976
eeeeemmmmeeeeeD	chr12:56490260-56490485(+)$1	225	16	31	9.9275
eeeeennnnneeeee	chr16:89346553-89346829(-)$1	276	64	79	9.1976
eeeeemmmmeeeee:	chr14:70238176-70238445(+)$1	269	218	233	10.2831
eeeeemmmmeeeee]	chr11:129991537-129991765(+)$1	228	74	89	10.9443
eeeeeooooooeeee	chr1:28832455-28832699(+)$1	244	200	215	9.8135
eeeeemmmmeeeee3	chr9:117050880-117051123(+)$1	243	134	149	10.8871
eeeeeooooooeeee	chr1:150192900-150193164(-)$1	264	100	115	9.8135
eeeeemmmmeeeeec	chr20:34302176-34302408(-)$1	232	179	194	10.7602
eeeeemmmmeeeee:	chr9:100818961-100819252(+)$1	291	215	230	10.2831
eeeeennnnneeeee	chr14:39736608-39736858(+)$1	250	127	142	9.1976
eeeeemmmmeeeee3	chr19:24216173-24216521(+)$1	348	223	238	10.8871
eeeeemmmmeeeee:	chr3:9854573-9854897(+)$1	324	169	184	10.2831
eeeeemmmmeeeeec	chr20:34302145-34302376(-)$1	231	147	162	10.7602
eeeeemmmmeeeee]	chr16:68265771-68266090(-)$1	319	221	236	10.9443
eeeeemmmmeeeeed	chr21:46915171-46915373(+)$1	202	50	65	10.6899
eeeeemmmmeeeee2	chr1:46073535-46073847(+)$1	312	128	143	10.7082
eeeeemmmmeeeee2	chr20:3869933-3870211(+)$1	278	53	68	10.7082
eeeeellleeeeecc	chr11:61036292-61036582(-)$1	290	98	113	9.0793
eeeeeooooooeeee	chr19:1360067-1360399(+)$1	332	153	168	9.8135
eeeeellleeeee33	chr8:144678056-144678363(-)$1	307	34	49	9.1652
eeeeellleeeeecc	chr12:6657484-6657801(-)$1	317	207	222	9.0793
eeeeeooooooeeee	chr17:46052789-46053038(+)$1	249	227	242	9.8135
ee[bbmmmmbbeeee	chr19:49514144-49514395(+)$1	251	203	218	6.9077
eeeeemmmmeeeeec	chr3:185363038-185363307(-)$1	269	186	201	10.7602
deeeeellleeeee]	chr20:35491740-35492042(-)$1	302	89	104	9.2544
eeeeemmmmeeeee:	chr12:104697593-104697964(+)$1	371	22	37	10.2831
eeeeemmmmeeeee:	chr9:90113792-90114082(+)$1	290	26	41	10.2831
eeeeemmmmeeeeeC	chr16:457353-457644(+)$1	291	74	89	10.0460
[eeeeellleeeeea	chr9:117052460-117052710(+)$1	250	202	217	9.0458
eeeeemmmmeeeeeb	chr2:128180520-128180764(+)$1	244	19	34	10.5680
ceeeeellleeeee]	chr17:8378189-8378496(+)$1	307	77	92	9.1179
eeeeemmmmeeeee]	chr11:129991565-129991802(+)$1	237	46	61	10.9443
eeeeeooooooeeee	chr9:117012811-117013029(+)$1	218	104	119	9.8135
eeeeemmmmeeeee]	chr19:39437030-39437285(-)$1	255	148	163	10.9443
eeeeemmmmeeeee:	chr7:77166718-77166990(+)$1	272	12	27	10.2831
eeeeemmmmeeeee]	chr19:1274225-1274478(+)$1	253	49	64	10.9443
eeeeennnnneeeee	chr14:21463233-21463495(+)$1	262	234	249	9.1976
eeeeennnnneeeee	chr9:117037888-117038148(+)$1	260	39	54	9.1976
eeeeemmmmeeeee:	chr8:124408489-124408772(-)$1	283	238	253	10.2831
eeeeellleeeeedd	chr11:82868102-82868352(+)$1	250	11	26	9.1247
eeeeeooooooeeee	chr18:55711818-55712041(+)$1	223	64	79	9.8135
eeeeemmmmeeeee:	chr17:27074138-27074401(+)$1	263	92	107	10.2831
eeeeellleeeeeff	chr9:139743573-139743849(+)$1	276	202	217	8.9909
eeeeemmmmeeeeeF	chr11:66384000-66384290(+)$1	290	191	206	10.4717
eeeeeooooooeeee	chr2:61404600-61404860(+)$1	260	74	89	9.8135
eeeeeooooooeeee	chr3:184103733-184103936(+)$1	203	85	100	9.8135
eeeeeooooooeeee	chr17:80190050-80190278(+)$1	228	192	207	9.8135
eeeeennnnneeeee	chr6:167412764-167413112(+)$1	348	203	218	9.1976
eeeeeooooooeeee	chr10:103577753-103578018(-)$1	265	15	30	9.8135
eeeeemmmmeeeeeh	chr12:26985932-26986192(-)$1	260	44	59	10.4763
eeeee4444eeeee]	chr14:39736600-39736808(+)$1	208	116	131	8.8026

#otherMatches

#Seq PSSM
CAGUGUGGAAUCGCU	chr16:89350981-89351318(-)$1	337	120	135	9.8135
AGGGUGCCGCGGCCC	chr1:2125078-2125387(-)$1	309	255	270	9.8135
ccagcauggagcugg	chr15:42129578-42129861(+)$1	283	152	167	9.1976
CCUCCUCUGGGAGGA	chr12:72056719-72057048(-)$1	329	177	192	10.2831
CUAUGCCUGCAAGCU	chr12:132195558-132195916(+)$1	358	332	347	6.9077
agugccacuguacuc	chr1:28834539-28834751(+)$1	212	2	17	10.2831
GUGGUGACGGCCACA	chr3:184099255-184099512(+)$1	257	139	154	10.2831
UGAGCAAGCAGCUCA	chr17:74303484-74303752(-)$1	268	10	25	9.1976
UGCUCCUCAGAGCAU	chr12:56490260-56490485(+)$1	225	16	31	9.9275
UGGAGUCCUUCUUCA	chr16:89346553-89346829(-)$1	276	64	79	9.1976
UCACAUUUUUGUGAA	chr14:70238176-70238445(+)$1	269	218	233	10.2831
AGAUUAUUGGAUCUG	chr11:129991537-129991765(+)$1	228	74	89	10.9443
GCUAUAGAUCAGUAG	chr1:28832455-28832699(+)$1	244	200	215	9.8135
CCGGGAGACCCUGGG	chr9:117050880-117051123(+)$1	243	134	149	10.8871
GAAGAAGGAGGUCUU	chr1:150192900-150193164(-)$1	264	100	115	9.8135
AUGUUACUGAACGUA	chr20:34302176-34302408(-)$1	232	179	194	10.7602
CCAGGGCGACCUGGA	chr9:100818961-100819252(+)$1	291	215	230	10.2831
GGCGCGAUGAGUGUU	chr14:39736608-39736858(+)$1	250	127	142	9.1976
UCAGGACAUCCUGGA	chr19:24216173-24216521(+)$1	348	223	238	10.8871
CCAGAAGGAUCUGGA	chr3:9854573-9854897(+)$1	324	169	184	10.2831
AUGUUACUGAACGUA	chr20:34302145-34302376(-)$1	231	147	162	10.7602
GAGGGGCUGCUCUUU	chr16:68265771-68266090(-)$1	319	221	236	10.9443
CUGGUAAUCAUCAGU	chr21:46915171-46915373(+)$1	202	50	65	10.6899
UCAGAAGUCUCUGAA	chr1:46073535-46073847(+)$1	312	128	143	10.7082
UGCGCGUUGGCGCAA	chr20:3869933-3870211(+)$1	278	53	68	10.7082
GGCUCGGUGAGCUGC	chr11:61036292-61036582(-)$1	290	98	113	9.0793
GGCUCGAUUUGGAGU	chr19:1360067-1360399(+)$1	332	153	168	9.8135
CCUCCUCUGGAGGAC	chr8:144678056-144678363(-)$1	307	34	49	9.1652
AGAGGUAACCUCUGC	chr12:6657484-6657801(-)$1	317	207	222	9.0793
GAGGUAGAGAGGCCU	chr17:46052789-46053038(+)$1	249	227	242	9.8135
GGAGUGAGGACCCAG	chr19:49514144-49514395(+)$1	251	203	218	6.9077
GGUUUGCCAGAACCA	chr3:185363038-185363307(-)$1	269	186	201	10.7602
GGCGGUCGGGCCGCA	chr20:35491740-35492042(-)$1	302	89	104	9.2544
UUCCCGGAAGGGAGA	chr12:104697593-104697964(+)$1	371	22	37	10.2831
GGAGGUCUACUUCCU	chr9:90113792-90114082(+)$1	290	26	41	10.2831
GCCAGGAAGCUGGCU	chr16:457353-457644(+)$1	291	74	89	10.0460
AGGGGAACUUCCCCA	chr9:117052460-117052710(+)$1	250	202	217	9.0458
GCUGGACUACCGGCG	chr2:128180520-128180764(+)$1	244	19	34	10.5680
GGGAGGGGCCUUCCA	chr17:8378189-8378496(+)$1	307	77	92	9.1179
AGAUUAUUGGAUCUG	chr11:129991565-129991802(+)$1	237	46	61	10.9443
CUGGUCGGGGAGCCA	chr9:117012811-117013029(+)$1	218	104	119	9.8135
CAGAUUGAGAUCUGU	chr19:39437030-39437285(-)$1	255	148	163	10.9443
GAGCCGCGGGGCUUG	chr7:77166718-77166990(+)$1	272	12	27	10.2831
CGUUGGGAGUAACGC	chr19:1274225-1274478(+)$1	253	49	64	10.9443
UGUCAUGUAUUGACA	chr14:21463233-21463495(+)$1	262	234	249	9.1976
CCCUGCCACCCAGGG	chr9:117037888-117038148(+)$1	260	39	54	9.1976
UUGGACCUGUCCAGU	chr8:124408489-124408772(-)$1	283	238	253	10.2831
CUGGUUUUAUCAGUG	chr11:82868102-82868352(+)$1	250	11	26	9.1247
CGCCGGCUCCAUGGC	chr18:55711818-55712041(+)$1	223	64	79	9.8135
UGAAGGAGUCUUCAA	chr17:27074138-27074401(+)$1	263	92	107	10.2831
GGGAAGCAUUCCCCG	chr9:139743573-139743849(+)$1	276	202	217	8.9909
AUGAAGAUAUUCGUG	chr11:66384000-66384290(+)$1	290	191	206	10.4717
UGGCCAAGUGGGGCC	chr2:61404600-61404860(+)$1	260	74	89	9.8135
CCUGUCUAUGUGCAG	chr3:184103733-184103936(+)$1	203	85	100	9.8135
GUCUGCAGGUCCAGA	chr17:80190050-80190278(+)$1	228	192	207	9.8135
CGCUGGAGAACAGCG	chr6:167412764-167413112(+)$1	348	203	218	9.1976
AGCCGAGGCUGCGGC	chr10:103577753-103578018(-)$1	265	15	30	9.8135
CCGAGGGGGCUCGGC	chr12:26985932-26986192(-)$1	260	44	59	10.4763
GCUACGCAGGGUGAG	chr14:39736600-39736808(+)$1	208	116	131	8.8026

#DB
(((((......))))	chr16:89350981-89351318(-)$1	1	120	135	9.8135
(((((......))))	chr1:2125078-2125387(-)$1	1	255	270	9.8135
(((((.....)))))	chr15:42129578-42129861(+)$1	1	152	167	9.1976
(((((....))))).	chr12:72056719-72057048(-)$1	1	177	192	10.2831
((.((....))))))	chr12:132195558-132195916(+)$1	1	332	347	6.9077
(((((....))))).	chr1:28834539-28834751(+)$1	1	2	17	10.2831
(((((....))))).	chr3:184099255-184099512(+)$1	1	139	154	10.2831
(((((.....)))))	chr17:74303484-74303752(-)$1	1	10	25	9.1976
(((((....)))))(	chr12:56490260-56490485(+)$1	1	16	31	9.9275
(((((.....)))))	chr16:89346553-89346829(-)$1	1	64	79	9.1976
(((((....))))).	chr14:70238176-70238445(+)$1	1	218	233	10.2831
(((((....))))).	chr11:129991537-129991765(+)$1	1	74	89	10.9443
(((((......))))	chr1:28832455-28832699(+)$1	1	200	215	9.8135
(((((....))))).	chr9:117050880-117051123(+)$1	1	134	149	10.8871
(((((......))))	chr1:150192900-150193164(-)$1	1	100	115	9.8135
(((((....)))))(	chr20:34302176-34302408(-)$1	1	179	194	10.7602
(((((....))))).	chr9:100818961-100819252(+)$1	1	215	230	10.2831
(((((.....)))))	chr14:39736608-39736858(+)$1	1	127	142	9.1976
(((((....))))).	chr19:24216173-24216521(+)$1	1	223	238	10.8871
(((((....))))).	chr3:9854573-9854897(+)$1	1	169	184	10.2831
(((((....)))))(	chr20:34302145-34302376(-)$1	1	147	162	10.7602
(((((....))))).	chr16:68265771-68266090(-)$1	1	221	236	10.9443
(((((....))))))	chr21:46915171-46915373(+)$1	1	50	65	10.6899
(((((....))))).	chr1:46073535-46073847(+)$1	1	128	143	10.7082
(((((....))))).	chr20:3869933-3870211(+)$1	1	53	68	10.7082
(((((...)))))((	chr11:61036292-61036582(-)$1	1	98	113	9.0793
(((((......))))	chr19:1360067-1360399(+)$1	1	153	168	9.8135
(((((...)))))..	chr8:144678056-144678363(-)$1	1	34	49	9.1652
(((((...)))))((	chr12:6657484-6657801(-)$1	1	207	222	9.0793
(((((......))))	chr17:46052789-46053038(+)$1	1	227	242	9.8135
((.((....))))))	chr19:49514144-49514395(+)$1	1	203	218	6.9077
(((((....))))))	chr3:185363038-185363307(-)$1	1	186	201	10.7602
((((((...))))).	chr20:35491740-35492042(-)$1	1	89	104	9.2544
(((((....))))).	chr12:104697593-104697964(+)$1	1	22	37	10.2831
(((((....))))).	chr9:90113792-90114082(+)$1	1	26	41	10.2831
(((((....)))))(	chr16:457353-457644(+)$1	1	74	89	10.0460
.(((((...))))))	chr9:117052460-117052710(+)$1	1	202	217	9.0458
(((((....)))))(	chr2:128180520-128180764(+)$1	1	19	34	10.5680
((((((...))))).	chr17:8378189-8378496(+)$1	1	77	92	9.1179
(((((....))))).	chr11:129991565-129991802(+)$1	1	46	61	10.9443
(((((......))))	chr9:117012811-117013029(+)$1	1	104	119	9.8135
(((((....))))).	chr19:39437030-39437285(-)$1	1	148	163	10.9443
(((((....))))).	chr7:77166718-77166990(+)$1	1	12	27	10.2831
(((((....))))).	chr19:1274225-1274478(+)$1	1	49	64	10.9443
(((((.....)))))	chr14:21463233-21463495(+)$1	1	234	249	9.1976
(((((.....)))))	chr9:117037888-117038148(+)$1	1	39	54	9.1976
(((((....))))).	chr8:124408489-124408772(-)$1	1	238	253	10.2831
(((((...)))))))	chr11:82868102-82868352(+)$1	1	11	26	9.1247
(((((......))))	chr18:55711818-55712041(+)$1	1	64	79	9.8135
(((((....))))).	chr17:27074138-27074401(+)$1	1	92	107	10.2831
(((((...)))))((	chr9:139743573-139743849(+)$1	1	202	217	8.9909
(((((....))))))	chr11:66384000-66384290(+)$1	1	191	206	10.4717
(((((......))))	chr2:61404600-61404860(+)$1	1	74	89	9.8135
(((((......))))	chr3:184103733-184103936(+)$1	1	85	100	9.8135
(((((......))))	chr17:80190050-80190278(+)$1	1	192	207	9.8135
(((((.....)))))	chr6:167412764-167413112(+)$1	1	203	218	9.1976
(((((......))))	chr10:103577753-103578018(-)$1	1	15	30	9.8135
(((((....)))))(	chr12:26985932-26986192(-)$1	1	44	59	10.4763
)))))....))))).	chr14:39736600-39736808(+)$1	1	116	131	8.8026

#PSSM
e : 0.94	d : 0.01	[ : 0.01	c : 0.01	
e : 0.99	
e : 0.96	[ : 0.03	
e : 0.96	b : 0.03	
e : 0.96	b : 0.03	
m : 0.52	o : 0.20	n : 0.11	l : 0.08	e : 0.05	4 : 0.01	
m : 0.52	o : 0.20	l : 0.13	n : 0.11	4 : 0.01	
m : 0.52	o : 0.20	l : 0.13	n : 0.11	4 : 0.01	
m : 0.52	o : 0.20	n : 0.11	e : 0.08	l : 0.05	4 : 0.01	
e : 0.64	o : 0.20	n : 0.11	b : 0.03	
e : 0.76	o : 0.20	b : 0.03	
e : 0.99	
e : 0.99	
e : 0.91	c : 0.03	3 : 0.01	d : 0.01	f : 0.01	
e : 0.35	: : 0.18	] : 0.13	c : 0.08	3 : 0.05	d : 0.03	2 : 0.03	D : 0.01	C : 0.01	a : 0.01	b : 0.01	f : 0.01	F : 0.01	h : 0.01	

#score	583.1103518600221
#seq	59
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_UTR_m2_run2.txt

#BEAR
[gggggggtttttttttttggggggg]	chr2:131808925-131809143(-)$1	218	71	98	22.9681
"gggggggtttttttttttgggggggf	chr21:47609940-47610211(-)$1	271	147	174	22.8677
====[cccuuuuuuuuuuuuccc]===	chr4:1718490-1718761(-)$1	271	122	149	25.3908
iiiii[bbuuuuuuuuuuuubb]iiii	chr8:144807030-144807312(-)$1	282	61	88	24.2970
ddd!!cccuuuuuuuuuuuuccc22dd	chr1:27731831-27732098(-)$1	267	63	90	24.0961
[eeeeeyyyyyyyyyyyyyyyyeeeee	chrX:109418942-109419212(+)$1	270	140	167	22.7771
bb!!cccvvvvvvvvvvvvvccc22bb	chr17:1421505-1421860(-)$1	355	143	170	23.4799
[gggggggtttttttttttggggggg]	chr22:22275648-22275943(-)$1	295	196	223	22.9681
iiiiiiiiuuuuuuuuuuuuiiiiiii	chr14:23080766-23081039(+)$1	273	173	200	24.7705
b[ffffffvvvvvvvvvvvvvffffff	chr10:104239690-104239936(-)$1	246	74	101	22.5593
ccc!!bbwwwwwwwwwwwwwwbb22cc	chr17:40467271-40467527(-)$1	256	223	250	22.7648
eeeeeyyyyyyyyyyyyyyyyeeeee6	chr3:52289922-52290178(-)$1	256	46	73	21.7526
eeeee[bbvvvvvvvvvvvvvbb]eee	chr7:44252586-44252874(+)$1	288	17	44	23.7106
ffffffyyyyyyyyyyyyyyyyfffff	chr12:53806804-53807071(+)$1	267	155	182	21.4561
ddd[dddduuuuuuuuuuuudddd]dd	chr7:935128-935381(+)$1	253	52	79	23.3902
[a!!ddddtttttttttttdddd]a]h	chr22:21801872-21802132(+)$1	260	130	157	22.3722
"ffffffvvvvvvvvvvvvvffffff3	chr22:39127922-39128188(+)$1	266	36	63	23.3336
gggg[bbwwwwwwwwwwwwwwbb]ggg	chr9:136229256-136229541(-)$1	285	186	213	23.5606
####dddduuuuuuuuuuuudddd333	chr17:47127450-47127711(+)$1	261	140	167	23.5725
ggggggwwwwwwwwwwwwwwggggggg	chr19:4653731-4653979(+)$1	248	162	189	23.8777
ffff[bbwwwwwwwwwwwwwwbb]fff	chr1:11849144-11849419(-)$1	275	67	94	22.7248
ccc[dddduuuuuuuuuuuuddddccc	chr3:126755050-126755268(+)$1	218	181	208	23.6755
=========ttttttttttt=======	chr8:11701079-11701352(-)$1	273	159	186	23.1001
!ccc[awwwwwwwwwwwwwwaccc22b	chr17:40556263-40556524(-)$1	261	221	248	23.1891
!!eeeeexxxxxxxxxxxxxxxeeeee	chr19:47113326-47113590(+)$1	264	189	216	19.6519
!ccc[awwwwwwwwwwwwwwaccc22b	chr17:40556182-40556430(-)$1	248	127	154	23.1891
hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr1:10519765-10520085(-)$1	320	279	306	21.9172
dddeeeeeuuuuuuuuuuuueeeee55	chr12:133298280-133298526(+)$1	246	52	79	22.1138
d"""ddddtttttttttttdddd333d	chr2:27249835-27250114(+)$1	279	10	37	21.9076
iiiiiiivvvvvvvvvvvvviiiiiii	chr16:31501591-31501871(-)$1	280	155	182	24.8380
ggggggwwwwwwwwwwwwwwggggggg	chr12:51325267-51325547(+)$1	280	165	192	23.8777
eee[cccvvvvvvvvvvvvvccceeee	chr1:6694757-6694994(-)$1	237	148	175	24.9474
ggggggwwwwwwwwwwwwwwggggggg	chr11:64621105-64621385(-)$1	280	125	152	23.8777
ffff[bbwwwwwwwwwwwwwwbb]fff	chr1:11849279-11849525(-)$1	246	173	200	22.7248
cc[eeeeeuuuuuuuuuuuueeeeecc	chr1:27180390-27180691(+)$1	301	148	175	24.0540
[eeeee[bbtttttttttttbbeeeee	chr9:132643492-132643771(+)$1	279	96	123	22.6533
""ddddwwwwwwwwwwwwwwdddd===	chr1:12073061-12073312(+)$1	251	198	225	22.9616
[eeeee[bbtttttttttttbbeeeee	chr9:132643391-132643658(+)$1	267	197	224	22.6533
hhhhhhhvvvvvvvvvvvvvhhhhhhh	chr2:219139172-219139429(-)$1	257	197	224	22.2974
dddeeeeewwwwwwwwwwwwwweeeee	chr5:174956156-174956473(+)$1	317	177	204	22.4059
ee!!dddduuuuuuuuuuuudddd]ee	chr17:37075650-37075907(+)$1	257	22	49	23.9980
eeeee[bbuuuuuuuuuuuubbeeeee	chr1:230416088-230416362(+)$1	274	232	259	24.2649
::eeeeevvvvvvvvvvvvveeeee:b	chr10:75009757-75009991(-)$1	234	168	195	21.1485
fffffcccuuuuuuuuuuuuccc]fff	chr19:18978468-18978744(+)$1	276	98	125	24.2693
eeee[cccuuuuuuuuuuuuccceeee	chr8:41510976-41511232(-)$1	256	77	104	25.0532
Jccc[ccctttttttttttcccccc:f	chr17:2288532-2288771(-)$1	239	34	61	20.6042
#eeeeewwwwwwwwwwwwwweeeee44	chr5:115166314-115166566(-)$1	252	177	204	23.4396
gggggggyyyyyyyyyyyyyyyygggg	chr10:72521210-72521472(+)$1	262	161	188	22.2405
iiiiiiivvvvvvvvvvvvviiiiiii	chr1:31342556-31342814(-)$1	258	200	227	24.8380
eee[cccvvvvvvvvvvvvvccceeee	chr17:73314314-73314566(-)$1	252	164	191	24.9474
:eeeeeyyyyyyyyyyyyyyyyeeeee	chr5:172378352-172378603(+)$1	251	22	49	21.7016
ddddyyyyyyyyyyyyyyyyddddggg	chr19:2429549-2429804(-)$1	255	17	44	21.0154
::ffffffvvvvvvvvvvvvvffffff	chr22:21305161-21305393(+)$1	232	83	110	20.8348
bbeeeeevvvvvvvvvvvvveeeee]b	chr20:36757396-36757678(-)$1	282	237	264	23.6497
ddddddddtttttttttttdddd]ddd	chr22:18571350-18571696(+)$1	346	26	53	21.4106
eee[cccvvvvvvvvvvvvvccc]eee	chr19:3535969-3536227(+)$1	258	222	249	25.0525
gggggggguuuuuuuuuuuuggggggg	chr17:38247707-38247950(+)$1	243	87	114	24.6599
eee[bbwwwwwwwwwwwwwwbb333ee	chr19:47113412-47113718(+)$1	306	107	134	22.9629

#otherMatches

#Seq PSSM
CUUUUUUUUUUUUUUUCCUGGAGAAAU	chr2:131808925-131809143(-)$1	218	71	98	22.9681
CCAGCCCAUCACCACUCCCUGGGCUGG	chr21:47609940-47610211(-)$1	271	147	174	22.8677
AGAUCCUGCACACACAGACACAGCGUC	chr4:1718490-1718761(-)$1	271	122	149	25.3908
UUUUGGAGGCCCGUCUCUUGCUGUGGG	chr8:144807030-144807312(-)$1	282	61	88	24.2970
CACGUAAUGUAGAAUGCAAAGUUUAGU	chr1:27731831-27732098(-)$1	267	63	90	24.0961
GGAGAGAAGCAACCCAACCAGACUCUU	chrX:109418942-109419212(+)$1	270	140	167	22.7771
CUCCUCACCCACCUCCAAACUGACUAG	chr17:1421505-1421860(-)$1	355	143	170	23.4799
GGCUGCUCCAGGCAGGUCAGAGCAGUG	chr22:22275648-22275943(-)$1	295	196	223	22.9681
UGGGGAGCCUCCAGCCACAAGUUCCCU	chr14:23080766-23081039(+)$1	273	173	200	24.7705
AUCUUCAAACCGUUUUAUUUAUUGAAG	chr10:104239690-104239936(-)$1	246	74	101	22.5593
CCUUGCUGACAUCCAAAUAGAAGAUAG	chr17:40467271-40467527(-)$1	256	223	250	22.7648
GGGGCCAUCUCUGCAGUAUUAGCCCCC	chr3:52289922-52290178(-)$1	256	46	73	21.7526
GGUUCGUACCAGCAAGUAGACUAGGAA	chr7:44252586-44252874(+)$1	288	17	44	23.7106
ACCUAGAAAUCUAUCUUAAAACCUGGG	chr12:53806804-53807071(+)$1	267	155	182	21.4561
CCGGCGCGUGUCUGUUUCUGUGCGGCG	chr7:935128-935381(+)$1	253	52	79	23.3902
GGGGUGGGGGGAGGCUAGACUCAAUGC	chr22:21801872-21802132(+)$1	260	130	157	22.3722
AAGGUGGCAUGGGCCUGAACCCACCUG	chr22:39127922-39128188(+)$1	266	36	63	23.3336
AGCCCCGACACACCACUUUCCUGAGGC	chr9:136229256-136229541(-)$1	285	186	213	23.5606
CUCCCGUGUAGGUUUCACAUUAUGUCC	chr17:47127450-47127711(+)$1	261	140	167	23.5725
gcagugaccgaugaucaugccacugca	chr19:4653731-4653979(+)$1	248	162	189	23.8777
AGGCGUUGGUGCCACUUCUUAAAGGCC	chr1:11849144-11849419(-)$1	275	67	94	22.7248
GCCUCAUGAAGCAGUUCCCACAUGGGC	chr3:126755050-126755268(+)$1	218	181	208	23.6755
UGUCUUGGUGAUCUCACAUAACCAAGA	chr8:11701079-11701352(-)$1	273	159	186	23.1001
GGGGACUCAAAGCCAAAACUGCCCAAA	chr17:40556263-40556524(-)$1	261	221	248	23.1891
UUGGCGCCGCUUCCUCACAUCUGUGCU	chr19:47113326-47113590(+)$1	264	189	216	19.6519
GGGGACUCAAAGCCAAAACUGCCCAAA	chr17:40556182-40556430(-)$1	248	127	154	23.1891
ACuuuuuuuuuuuuuuuuuuaaaaaGG	chr1:10519765-10520085(-)$1	320	279	306	21.9172
cuggcuaauuuuuuguauuuuuaguaa	chr12:133298280-133298526(+)$1	246	52	79	22.1138
ACCAGGCUCACCCACCCAAGGCCCCCU	chr2:27249835-27250114(+)$1	279	10	37	21.9076
GCGGAGGACUGCCCACCCCACCUCUGC	chr16:31501591-31501871(-)$1	280	155	182	24.8380
gcagugaaccgagaucaugccauugua	chr12:51325267-51325547(+)$1	280	165	192	23.8777
AGGUGGCACUGCAGCUCCCCGCUCCUG	chr1:6694757-6694994(-)$1	237	148	175	24.9474
CGCGGGCCCUGCCCUUUCCUCCCGCGC	chr11:64621105-64621385(-)$1	280	125	152	23.8777
AGGCGUUGGUGCCACUUCUUAAAGGCC	chr1:11849279-11849525(-)$1	246	173	200	22.7248
CUAGGUACCCCAGCUGAUCAGUGCCAG	chr1:27180390-27180691(+)$1	301	148	175	24.0540
GAGCCCACCUGGAGGGAUGUGGGGGCU	chr9:132643492-132643771(+)$1	279	96	123	22.6533
AAAUUCUUUAGCGUAAACAUGAAUUUU	chr1:12073061-12073312(+)$1	251	198	225	22.9616
GAGCCCACCUGGAGGGAUGUGGGGGCU	chr9:132643391-132643658(+)$1	267	197	224	22.6533
CUGGGUUCUUUCCUUCUGCUAACCCAG	chr2:219139172-219139429(-)$1	257	197	224	22.2974
uccaucucaaaaaaaaaaaaaaGAGAU	chr5:174956156-174956473(+)$1	317	177	204	22.4059
CCUCCUGCCCACGCAGACCUGCAGCGG	chr17:37075650-37075907(+)$1	257	22	49	23.9980
GCUGGGCCUUCAGAAUUAAUGGCCAGC	chr1:230416088-230416362(+)$1	274	232	259	24.2649
cagcuaauuuuuuuguauuuuuaguag	chr10:75009757-75009991(-)$1	234	168	195	21.1485
CCCCAGCCCCUCGAACGCCUGGCUUGG	chr19:18978468-18978744(+)$1	276	98	125	24.2693
AGGGCUCGCCUCUCCCGCCUCGAUCCU	chr8:41510976-41511232(-)$1	256	77	104	25.0532
CCACCUGGACACACACUCACCAGUGGC	chr17:2288532-2288771(-)$1	239	34	61	20.6042
aaauaaaaauuaaaaaaaaauuauuag	chr5:115166314-115166566(-)$1	252	177	204	23.4396
CCCUGGACCCCAAGUCCUCAGCAUCCA	chr10:72521210-72521472(+)$1	262	161	188	22.2405
GGGUCUGCCAUUCCCUCCCCCAGGCCU	chr1:31342556-31342814(-)$1	258	200	227	24.8380
AUCCUGCUUCUCUUUUCCUCGCAGAUG	chr17:73314314-73314566(-)$1	252	164	191	24.9474
AGAUGGAACCCUGACUUCUGCCCCAUC	chr5:172378352-172378603(+)$1	251	22	49	21.7016
AAUGGAUAUUUAUUUUUUUACAUUGGU	chr19:2429549-2429804(-)$1	255	17	44	21.0154
UUACUUUGUUUUAAAAAGCAUCAGAGU	chr22:21305161-21305393(+)$1	232	83	110	20.8348
GUCCUGGUUCCUUCCUAUGCCCAGGUA	chr20:36757396-36757678(-)$1	282	237	264	23.6497
ucuacuaaaaauacaaaaauuagcuag	chr22:18571350-18571696(+)$1	346	26	53	21.4106
AUUUGUUUUGUGUUUUUGUUGACUAGU	chr19:3535969-3536227(+)$1	258	222	249	25.0525
CCAGUGGAAUUCCUGACCUGUCUGCUG	chr17:38247707-38247950(+)$1	243	87	114	24.6599
CGCCGCUUCCUCACAUCUGUGCUCCGU	chr19:47113412-47113718(+)$1	306	107	134	22.9629

#DB
.(((((((...........))))))).	chr2:131808925-131809143(-)$1	1	71	98	22.9681
.(((((((...........))))))))	chr21:47609940-47610211(-)$1	1	147	174	22.8677
((((.(((............))).)))	chr4:1718490-1718761(-)$1	1	122	149	25.3908
(((((.((............)).))))	chr8:144807030-144807312(-)$1	1	61	88	24.2970
(((..(((............)))..))	chr1:27731831-27732098(-)$1	1	63	90	24.0961
.(((((................)))))	chrX:109418942-109419212(+)$1	1	140	167	22.7771
((..(((.............)))..))	chr17:1421505-1421860(-)$1	1	143	170	23.4799
.(((((((...........))))))).	chr22:22275648-22275943(-)$1	1	196	223	22.9681
((((((((............)))))))	chr14:23080766-23081039(+)$1	1	173	200	24.7705
(.((((((.............))))))	chr10:104239690-104239936(-)$1	1	74	101	22.5593
(((..((..............))..))	chr17:40467271-40467527(-)$1	1	223	250	22.7648
(((((................))))).	chr3:52289922-52290178(-)$1	1	46	73	21.7526
(((((.((.............)).)))	chr7:44252586-44252874(+)$1	1	17	44	23.7106
((((((................)))))	chr12:53806804-53807071(+)$1	1	155	182	21.4561
(((.((((............)))).))	chr7:935128-935381(+)$1	1	52	79	23.3902
.(..((((...........)))).).)	chr22:21801872-21802132(+)$1	1	130	157	22.3722
.((((((.............)))))).	chr22:39127922-39128188(+)$1	1	36	63	23.3336
((((.((..............)).)))	chr9:136229256-136229541(-)$1	1	186	213	23.5606
....((((............))))...	chr17:47127450-47127711(+)$1	1	140	167	23.5725
((((((..............)))))))	chr19:4653731-4653979(+)$1	1	162	189	23.8777
((((.((..............)).)))	chr1:11849144-11849419(-)$1	1	67	94	22.7248
(((.((((............)))))))	chr3:126755050-126755268(+)$1	1	181	208	23.6755
(((((((((...........)))))))	chr8:11701079-11701352(-)$1	1	159	186	23.1001
.(((.(..............))))..)	chr17:40556263-40556524(-)$1	1	221	248	23.1891
..(((((...............)))))	chr19:47113326-47113590(+)$1	1	189	216	19.6519
.(((.(..............))))..)	chr17:40556182-40556430(-)$1	1	127	154	23.1891
((((((((............)))))))	chr1:10519765-10520085(-)$1	1	279	306	21.9172
((((((((............)))))..	chr12:133298280-133298526(+)$1	1	52	79	22.1138
(...((((...........))))...)	chr2:27249835-27250114(+)$1	1	10	37	21.9076
(((((((.............)))))))	chr16:31501591-31501871(-)$1	1	155	182	24.8380
((((((..............)))))))	chr12:51325267-51325547(+)$1	1	165	192	23.8777
(((.(((.............)))))))	chr1:6694757-6694994(-)$1	1	148	175	24.9474
((((((..............)))))))	chr11:64621105-64621385(-)$1	1	125	152	23.8777
((((.((..............)).)))	chr1:11849279-11849525(-)$1	1	173	200	22.7248
((.(((((............)))))))	chr1:27180390-27180691(+)$1	1	148	175	24.0540
.(((((.((...........)))))))	chr9:132643492-132643771(+)$1	1	96	123	22.6533
..((((..............)))))))	chr1:12073061-12073312(+)$1	1	198	225	22.9616
.(((((.((...........)))))))	chr9:132643391-132643658(+)$1	1	197	224	22.6533
(((((((.............)))))))	chr2:219139172-219139429(-)$1	1	197	224	22.2974
)))(((((..............)))))	chr5:174956156-174956473(+)$1	1	177	204	22.4059
((..((((............)))).))	chr17:37075650-37075907(+)$1	1	22	49	23.9980
(((((.((............)))))))	chr1:230416088-230416362(+)$1	1	232	259	24.2649
..(((((.............))))).(	chr10:75009757-75009991(-)$1	1	168	195	21.1485
((((((((............))).)))	chr19:18978468-18978744(+)$1	1	98	125	24.2693
((((.(((............)))))))	chr8:41510976-41511232(-)$1	1	77	104	25.0532
((((.(((...........)))))).(	chr17:2288532-2288771(-)$1	1	34	61	20.6042
.(((((..............)))))..	chr5:115166314-115166566(-)$1	1	177	204	23.4396
(((((((................))))	chr10:72521210-72521472(+)$1	1	161	188	22.2405
(((((((.............)))))))	chr1:31342556-31342814(-)$1	1	200	227	24.8380
(((.(((.............)))))))	chr17:73314314-73314566(-)$1	1	164	191	24.9474
.(((((................)))))	chr5:172378352-172378603(+)$1	1	22	49	21.7016
((((................))))(((	chr19:2429549-2429804(-)$1	1	17	44	21.0154
..((((((.............))))))	chr22:21305161-21305393(+)$1	1	83	110	20.8348
(((((((.............))))).)	chr20:36757396-36757678(-)$1	1	237	264	23.6497
((((((((...........)))).)))	chr22:18571350-18571696(+)$1	1	26	53	21.4106
(((.(((.............))).)))	chr19:3535969-3536227(+)$1	1	222	249	25.0525
)(((((((............)))))))	chr17:38247707-38247950(+)$1	1	87	114	24.6599
(((.((..............))...))	chr19:47113412-47113718(+)$1	1	107	134	22.9629

#PSSM
e : 0.15	d : 0.12	[ : 0.10	g : 0.10	i : 0.06	f : 0.06	" : 0.05	b : 0.05	c : 0.05	! : 0.05	: : 0.05	= : 0.03	# : 0.03	h : 0.03	J : 0.01	
e : 0.24	g : 0.15	d : 0.10	c : 0.10	f : 0.08	i : 0.06	= : 0.03	b : 0.03	h : 0.03	" : 0.03	: : 0.03	[ : 0.01	a : 0.01	# : 0.01	! : 0.01	
e : 0.27	g : 0.15	d : 0.12	f : 0.12	c : 0.08	i : 0.06	! : 0.05	= : 0.03	h : 0.03	# : 0.01	" : 0.01	[ : 0.01	
e : 0.25	g : 0.15	f : 0.12	[ : 0.10	! : 0.08	i : 0.06	c : 0.05	d : 0.05	= : 0.03	h : 0.03	# : 0.01	" : 0.01	
e : 0.24	g : 0.13	[ : 0.13	d : 0.13	f : 0.08	i : 0.06	c : 0.06	! : 0.03	h : 0.03	= : 0.01	y : 0.01	b : 0.01	
e : 0.18	c : 0.15	g : 0.13	d : 0.13	b : 0.08	f : 0.06	[ : 0.05	i : 0.05	y : 0.03	a : 0.03	h : 0.03	= : 0.01	
c : 0.15	w : 0.13	b : 0.12	d : 0.12	e : 0.10	g : 0.08	y : 0.08	i : 0.05	f : 0.05	h : 0.03	[ : 0.03	= : 0.01	
w : 0.20	v : 0.17	d : 0.12	y : 0.10	c : 0.08	b : 0.08	g : 0.06	e : 0.05	f : 0.03	i : 0.01	= : 0.01	x : 0.01	h : 0.01	
u : 0.25	v : 0.22	w : 0.22	t : 0.12	y : 0.10	b : 0.03	= : 0.01	x : 0.01	
u : 0.25	v : 0.22	w : 0.22	t : 0.17	y : 0.10	x : 0.01	
u : 0.25	v : 0.22	w : 0.22	t : 0.17	y : 0.10	x : 0.01	
u : 0.25	v : 0.22	w : 0.22	t : 0.17	y : 0.10	x : 0.01	
u : 0.25	v : 0.22	w : 0.22	t : 0.17	y : 0.10	x : 0.01	
u : 0.25	v : 0.22	w : 0.22	t : 0.17	y : 0.10	x : 0.01	
u : 0.25	v : 0.22	w : 0.22	t : 0.17	y : 0.10	x : 0.01	
u : 0.25	v : 0.22	w : 0.22	t : 0.17	y : 0.10	x : 0.01	
u : 0.25	v : 0.22	w : 0.22	t : 0.17	y : 0.10	x : 0.01	
u : 0.25	v : 0.22	w : 0.22	t : 0.17	y : 0.10	x : 0.01	
u : 0.25	v : 0.22	w : 0.22	t : 0.17	y : 0.10	x : 0.01	
u : 0.25	v : 0.22	w : 0.22	y : 0.10	g : 0.05	d : 0.05	t : 0.05	x : 0.01	c : 0.01	
c : 0.15	d : 0.15	g : 0.12	b : 0.08	y : 0.08	w : 0.08	e : 0.08	i : 0.05	v : 0.05	a : 0.03	h : 0.03	f : 0.01	= : 0.01	x : 0.01	
c : 0.18	b : 0.17	d : 0.15	g : 0.12	e : 0.10	y : 0.06	i : 0.05	f : 0.05	h : 0.03	= : 0.01	x : 0.01	w : 0.01	
e : 0.22	c : 0.18	d : 0.15	g : 0.12	b : 0.08	f : 0.06	i : 0.05	h : 0.03	] : 0.01	= : 0.01	y : 0.01	3 : 0.01	
e : 0.27	] : 0.15	g : 0.13	d : 0.10	i : 0.06	f : 0.06	2 : 0.05	c : 0.05	h : 0.03	3 : 0.03	= : 0.01	
e : 0.31	g : 0.17	f : 0.12	2 : 0.08	i : 0.06	= : 0.05	3 : 0.05	] : 0.03	c : 0.03	h : 0.03	a : 0.01	d : 0.01	
e : 0.25	g : 0.17	f : 0.12	i : 0.06	= : 0.05	d : 0.05	c : 0.05	] : 0.03	3 : 0.03	2 : 0.03	h : 0.03	: : 0.03	b : 0.01	5 : 0.01	4 : 0.01	
e : 0.24	f : 0.13	g : 0.12	b : 0.08	i : 0.06	d : 0.06	= : 0.05	c : 0.05	h : 0.05	] : 0.03	3 : 0.03	6 : 0.01	5 : 0.01	4 : 0.01	

#score	1340.8196865258483
#seq	58
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_transcript_m2_run2.txt

#BEAR
========!!eeeeellleeeee=========	chr11:584517-584757(+)$1	240	162	194	11.8315
dddd[ccc!!cccooooooccc22ccc]dddd	chr1:12644335-12644618(-)$1	283	58	90	9.7449
cccffffff!!cccmmmmccc]ffffff333c	chr19:934237-934476(+)$1	239	168	200	11.7027
ee!!ccc[ccc[bbmmmmbb]cccccc]eeee	chr19:42756366-42756615(-)$1	249	119	151	11.8747
"ccc!!eeeee[bbmmmmbbeeeee22ccc22	chr19:1881799-1882052(-)$1	253	120	152	11.1237
hhccca[gggggggmmmmggggggg]a]ccc]	chr22:20094958-20095214(+)$1	256	81	113	12.0390
dddd!!gggggggooooooggggggg]ddddd	chr22:23541686-23541958(+)$1	272	10	42	9.8274
==ccc[ggggggg[allla]ggggggg]ccc3	chr4:900904-901152(-)$1	248	153	185	11.5714
ccc####dddd[ccclllccc]ddddcccggg	chr22:50031242-50031476(-)$1	234	196	228	9.7612
dccc[ccc####bbmmmmbb333ccc]ccc22	chr13:114562965-114563242(-)$1	277	27	59	11.9211
==========[cccmmmmccc]==========	chr19:5052301-5052558(+)$1	257	3	35	14.3407
iiiiiiii[cccccclllccc]ccciiiiiii	chr5:134262622-134262850(+)$1	228	75	107	11.8368
eeee!!bb[ddddoooooodddd]bb333eee	chr17:62501964-62502237(-)$1	273	186	218	9.3980
:dddd[gggggggammmma]ggggggg]dddd	chr8:1782394-1782618(+)$1	224	5	37	10.4000
ggggg"""ffffffmmmmffffffggggggg]	chr2:97534556-97534817(-)$1	261	100	132	11.5975
ggggggg[ggggggglllggggggg333gggg	chr16:88838721-88838995(-)$1	274	90	122	11.6150
eeeee####eeeeemmmmeeeee333eeeee]	chrM:14167-14397(-)$1	230	115	147	11.1017
"""==========rrrrrrrrr==========	chr14:102247826-102248078(+)$1	252	160	192	9.6090
"eeeee!!ffffffmmmmffffff]eeeee33	chr19:2270063-2270309(+)$1	246	164	196	10.4737
cc[ccc[bb[ddddmmmmdddd22bb22ccc3	chr21:46949157-46949459(-)$1	302	254	286	10.4337
Deeeeeccc[ddddmmmmddddccc]eeeeeb	chr5:176738850-176739091(-)$1	241	114	146	9.2900
!eeeee[a[eeeeemmmmeeeee]a]eeeee]	chr4:1237457-1237705(-)$1	248	52	84	11.3919
ccc[bb!!a[cccooooooccc]a22bb]ccc	chr8:38775489-38775758(+)$1	269	15	47	9.2798
##bb!!dddd!!bbmmmmbb22dddd22bb33	chr4:56963490-56963729(+)$1	239	87	119	9.7415
cc!!eeeee!!cccmmmmccceeeee]cccee	chr9:96435302-96435640(+)$1	338	213	245	11.6592
[bbaccc"""ddddmmmmdddd]ccc]a]bb]	chr21:46954459-46954717(-)$1	258	190	222	10.6654
ee[ffffff!!cccmmmmccc]ffffffeeee	chr19:5086124-5086373(+)$1	249	165	197	11.3633
aggggggg[ddddbblllbb]dddd]gggggg	chr3:13035409-13035667(-)$1	258	38	70	10.3282
eeeeecccbb[cccmmmmcccbb]ccc]eeee	chr17:29036843-29037092(+)$1	249	189	221	10.8300
b[ccc[ffffff[ammmma]ffffff]cccbb	chr1:1821801-1822062(-)$1	261	58	90	10.1328
=========[ddddoooooodddd========	chr2:220400258-220400512(+)$1	254	10	42	11.4044
ffggggggg[eeeeellleeeee]gggggggD	chr11:66393214-66393480(+)$1	266	108	140	9.3624
##ffffff[aacccmmmmccc]a]a]ffffff	chr7:100171453-100171712(-)$1	259	168	200	11.4130
ggggg####eeeeemmmmeeeee22ggggggg	chr8:9631577-9631842(+)$1	265	220	252	11.5974
[a[ccc[bb!!cccmmmmccc22bb]ccc]ad	chr12:125347771-125348019(-)$1	248	76	108	11.4607
$$$===========oooooo===========5	chr20:35202183-35202451(+)$1	268	25	57	10.8818
eeeeecccccc[bbmmmmbbccc]ccc]eeee	chr17:80478106-80478375(+)$1	269	53	85	11.5110
ggg"""eeeee[bbmmmmbb22eeeee22ggg	chr19:2445338-2445612(-)$1	274	192	224	11.3227
fffff!!gggggggmmmmggggggg333ffff	chr1:54819791-54820036(-)$1	245	167	199	11.8499
"ggggggg[bb[bbmmmmbb]bb22ggggggg	chr19:4037107-4037361(+)$1	254	209	241	11.4460
==========[cccmmmmccc]==========	chrM:14301-14521(-)$1	220	21	53	14.3407
==========[bboooooobb===========	chr8:101963092-101963329(-)$1	237	5	37	11.8407
gggg[iiiiiiiiimmmmiiiiiiiii22ggg	chr16:1427751-1428016(-)$1	265	62	94	13.0037
fbb!!eeeee[cccmmmmccc]eeeee22bb:	chr7:1485268-1485518(-)$1	250	132	164	9.5359
"""ccc[bb[ddddmmmmdddd]bb]ccchhh	chr1:1281641-1281933(-)$1	292	134	166	10.3658
ee"""ccc[ccc[bblllbb]ccc]ccc22ee	chr11:68228195-68228456(+)$1	261	121	153	9.8900
"""ccc[a[eeeeemmmmeeeee]a]ccc666	chr2:54197770-54198043(-)$1	273	93	125	10.5014
eeee[ccc[eeeeemmmmeeeeeccc]eeeee	chr5:154136560-154136852(+)$1	292	174	206	11.1338
gggg[ffffff[bbmmmmbb22ffffff22gg	chr19:4036919-4037208(+)$1	289	252	284	10.9077
ggggggg[bbbbbbmmmmbb]bb]bb333ggg	chr11:32915258-32915532(+)$1	274	169	201	10.8571
ffffeeeee[ddddmmmmdddd]eeeee4444	chr19:944249-944555(+)$1	306	40	72	9.9070
bb[a[bb[ggggggglllggggggg]bb]a]b	chr16:85648114-85648395(+)$1	281	24	56	9.1053
dddd[dddd[a[bbmmmmbb]a]dddd22ddd	chr19:572616-572863(+)$1	247	162	194	9.8552
fggggggg####bbmmmmbb22ggggggg]ff	chr16:88568113-88568377(+)$1	264	189	221	12.0081

#otherMatches

#Seq PSSM
GAGGUGUUGGUAUAGCCACUGUGAACACUUCU	chr11:584517-584757(+)$1	240	162	194	11.8315
CUAUGCUGGGCACUGGGAUGUGAACGGGAUAG	chr1:12644335-12644618(-)$1	283	58	90	9.7449
CGAAGGCAGGAGGCAGAAGCCACUGUCUACCU	chr19:934237-934476(+)$1	239	168	200	11.7027
GGGAGGGUGGAAGUCAGUACAUCCCCCACCCC	chr19:42756366-42756615(-)$1	249	119	151	11.8747
AGGGGAUGGGGACUGACAGGCCCCGGGCCCAU	chr19:1881799-1882052(-)$1	253	120	152	11.1237
CUCUCCUGGGCCACUUGUGUGGCUUUGUGGGC	chr22:20094958-20095214(+)$1	256	81	113	12.0390
GCGUCUGCUGCUUUGGGCUGGGCAGCUGCGCC	chr22:23541686-23541958(+)$1	272	10	42	9.8274
GGGACACGCAGGUGGGUCCGGUCUGUGAGUCG	chr4:900904-901152(-)$1	248	153	185	11.5714
aggccccggagcugccucgcgucuccccugag	chr22:50031242-50031476(-)$1	234	196	228	9.7612
GCACCUGUACCCGCACCUGCACGACAUGUGGC	chr13:114562965-114563242(-)$1	277	27	59	11.9211
gugcaugugugugugugcaugggcgcaugugu	chr19:5052301-5052558(+)$1	257	3	35	14.3407
AAUUAUGAUGCGACUGUGGGUACGUUCGUAGU	chr5:134262622-134262850(+)$1	228	75	107	11.8368
UUUUGAUAUUCACGUCACAGUGAUUGGAAGAG	chr17:62501964-62502237(-)$1	273	186	218	9.3980
CUGACCCGGUUAGCUCGUGACUGACUGUGUUA	chr8:1782394-1782618(+)$1	224	5	37	10.4000
GGACCCUUUGUUUGGGGGUGAGCAGGUCCCCA	chr2:97534556-97534817(-)$1	261	100	132	11.5975
GGCACGGGCCUUUUUAUGAGGGAGGAAGCCGU	chr16:88838721-88838995(-)$1	274	90	122	11.6150
GUCAGGGUUGAUUCGGGAGGAUCCUAUUGGUG	chrM:14167-14397(-)$1	230	115	147	11.1017
CCCAGGCCGGGGUCCCGCCUUUGCCCCGGCCU	chr14:102247826-102248078(+)$1	252	160	192	9.6090
GGCGGGGUCGGCCUUGGGGGGCUGGUCCGCGG	chr19:2270063-2270309(+)$1	246	164	196	10.4737
CCUCACCCCUGCAGCAUCCUGCCUGGAUGUGC	chr21:46949157-46949459(-)$1	302	254	286	10.4337
GCUGGGCGUUcccgcgggcggggcgucccggg	chr5:176738850-176739091(-)$1	241	114	146	9.2900
UGGGCUGAGAGCCGUGUGCGGCUGUGAGUUUU	chr4:1237457-1237705(-)$1	248	52	84	11.3919
GAGAACAGCGGCAAGUUUCUGCGGAGGUACUU	chr8:38775489-38775758(+)$1	269	15	47	9.2798
augcgcccgaucucgucugaucucggaagcua	chr4:56963490-56963729(+)$1	239	87	119	9.7415
UCGGCUUGCUGGCUUUAAGGUGUGAGAGACCA	chr9:96435302-96435640(+)$1	338	213	245	11.6592
GUGCCUGAUGAGGCCCCAGCCUGCAGAGCCAG	chr21:46954459-46954717(-)$1	258	190	222	10.6654
CCUGUGAAUUUUGGGUGUCUGUGUUCACGGGU	chr19:5086124-5086373(+)$1	249	165	197	11.3633
ccggccgcggggacggcgcgcucucggcggcu	chr3:13035409-13035667(-)$1	258	38	70	10.3282
GGGGCCCGGGAGGGGCGGCCCCCACGGAGCUC	chr17:29036843-29037092(+)$1	249	189	221	10.8300
CACCGGGGUGCGGGGUUGUGUGCGCCGCGGGC	chr1:1821801-1822062(-)$1	261	58	90	10.1328
ugagugugugaugugugugugCAUGCACACUU	chr2:220400258-220400512(+)$1	254	10	42	11.4044
GGUUCAGGUGGAGCAUAGUGCUCAGCCUGGGG	chr11:66393214-66393480(+)$1	266	108	140	9.3624
agcccggcgggggcACGCGCCACGUGGCCGGG	chr7:100171453-100171712(-)$1	259	168	200	11.4130
acuauagaauagaaugauuucuaaaaugguuu	chr8:9631577-9631842(+)$1	265	220	252	11.5974
ACUGAGGCUAGGGGGGAACCCAGGGGCUUUGC	chr12:125347771-125348019(-)$1	248	76	108	11.4607
GUUUCUUUUUCUCGGCCGGACGGGGAGGGGGC	chr20:35202183-35202451(+)$1	268	25	57	10.8818
GCCGCCGCUGCAGCUGCCGCGCGUGUGAGUGG	chr17:80478106-80478375(+)$1	269	53	85	11.5110
GGACACAGCAUGGGAAGGCCAGAUGCUCCUCC	chr19:2445338-2445612(-)$1	274	192	224	11.3227
CAGACAGGCAGCCUUGUAAGGCUGUAGAGUCU	chr1:54819791-54820036(-)$1	245	167	199	11.8499
AGUUGGGGGGGUGGGGCACCUCCAGCCCCGGC	chr19:4037107-4037361(+)$1	254	209	241	11.4460
UAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUA	chrM:14301-14521(-)$1	220	21	53	14.3407
GGGUGGGGGAUGGGUCUGACUUUUUUUGCUCC	chr8:101963092-101963329(-)$1	237	5	37	11.8407
AAUGAGGCUUUUCUUGGUAGGAAGGUUACUAU	chr16:1427751-1428016(-)$1	265	62	94	13.0037
UGUGGGUGUGUGUCUGCUGACCUGCACAAGCA	chr7:1485268-1485518(-)$1	250	132	164	9.5359
GCUCCGGGUCCCCACUGCUGGGUGCGUGGCGG	chr1:1281641-1281933(-)$1	292	134	166	10.3658
CCGGAGCAGGCCGCGGCGCGGGGUGUGCGAGG	chr11:68228195-68228456(+)$1	261	121	153	9.8900
gaggggguggggggggugUCCCUGGGCUCAUG	chr2:54197770-54198043(-)$1	273	93	125	10.5014
CGUGGUGCCUCCCCGCGCGGGGAGCGGCAUGU	chr5:154136560-154136852(+)$1	292	174	206	11.1338
GCCUGGGGCUCAGCACCUGCAGGGGCCUGAGG	chr19:4036919-4037208(+)$1	289	252	284	10.9077
GCCCGGCAGGGCGCGAACGCGGCUCCAGGGCC	chr11:32915258-32915532(+)$1	274	169	201	10.8571
UCCCCGUGUGUCUGGCUGCAGGGGCGCGUCCA	chr19:944249-944555(+)$1	306	40	72	9.9070
CCGCGACACCCUCAUUAGAUGGGGGAGUGGAG	chr16:85648114-85648395(+)$1	281	24	56	9.1053
CGGGAGCCUGGGGCCUCGGCGCGGGGCGGCCU	chr19:572616-572863(+)$1	247	162	194	9.8552
CCUGGGCCgaugagcaaacugaggcccaguga	chr16:88568113-88568377(+)$1	264	189	221	12.0081

#DB
((((((((..(((((...))))))))))))))	chr11:584517-584757(+)$1	1	162	194	11.8315
((((.(((..(((......)))..))).))))	chr1:12644335-12644618(-)$1	1	58	90	9.7449
(((((((((..(((....))).))))))...)	chr19:934237-934476(+)$1	1	168	200	11.7027
((..(((.(((.((....)).)))))).))))	chr19:42756366-42756615(-)$1	1	119	151	11.8747
.(((..(((((.((....)))))))..)))..	chr19:1881799-1882052(-)$1	1	120	152	11.1237
((((((.(((((((....))))))).).))).	chr22:20094958-20095214(+)$1	1	81	113	12.0390
((((..(((((((......))))))).))))(	chr22:23541686-23541958(+)$1	1	10	42	9.8274
(((((.(((((((.(...).))))))).))).	chr4:900904-901152(-)$1	1	153	185	11.5714
(((....((((.(((...))).))))))))))	chr22:50031242-50031476(-)$1	1	196	228	9.7612
((((.(((....((....))...))).)))..	chr13:114562965-114563242(-)$1	1	27	59	11.9211
((((((((((.(((....))).))))))))))	chr19:5052301-5052558(+)$1	1	3	35	14.3407
((((((((.((((((...))).))))))))))	chr5:134262622-134262850(+)$1	1	75	107	11.8368
((((..((.((((......)))).))...)))	chr17:62501964-62502237(-)$1	1	186	218	9.3980
.((((.((((((((....).))))))).))))	chr8:1782394-1782618(+)$1	1	5	37	10.4000
(((((...((((((....))))))))))))).	chr2:97534556-97534817(-)$1	1	100	132	11.5975
(((((((.(((((((...)))))))...))))	chr16:88838721-88838995(-)$1	1	90	122	11.6150
(((((....(((((....)))))...))))).	chrM:14167-14397(-)$1	1	115	147	11.1017
...((((((((((.........))))))))))	chr14:102247826-102248078(+)$1	1	160	192	9.6090
.(((((..((((((....)))))).)))))..	chr19:2270063-2270309(+)$1	1	164	196	10.4737
((.(((.((.((((....))))..))..))).	chr21:46949157-46949459(-)$1	1	254	286	10.4337
(((((((((.((((....))))))).)))))(	chr5:176738850-176739091(-)$1	1	114	146	9.2900
.(((((.(.(((((....))))).).))))).	chr4:1237457-1237705(-)$1	1	52	84	11.3919
(((.((..(.(((......))).)..)).)))	chr8:38775489-38775758(+)$1	1	15	47	9.2798
..((..((((..((....))..))))..))..	chr4:56963490-56963729(+)$1	1	87	119	9.7415
((..(((((..(((....)))))))).)))))	chr9:96435302-96435640(+)$1	1	213	245	11.6592
.((((((...((((....)))).))).).)).	chr21:46954459-46954717(-)$1	1	190	222	10.6654
((.((((((..(((....))).))))))))))	chr19:5086124-5086373(+)$1	1	165	197	11.3633
((((((((.((((((...)).)))).))))))	chr3:13035409-13035667(-)$1	1	38	70	10.3282
((((((((((.(((....))))).))).))))	chr17:29036843-29037092(+)$1	1	189	221	10.8300
(.(((.((((((.(....).)))))).)))))	chr1:1821801-1822062(-)$1	1	58	90	10.1328
(((((((((.((((......))))))))))))	chr2:220400258-220400512(+)$1	1	10	42	11.4044
))(((((((.(((((...))))).))))))))	chr11:66393214-66393480(+)$1	1	108	140	9.3624
..((((((.(((((....))).).).))))))	chr7:100171453-100171712(-)$1	1	168	200	11.4130
(((((....(((((....)))))..)))))))	chr8:9631577-9631842(+)$1	1	220	252	11.5974
.(.(((.((..(((....)))..)).))).))	chr12:125347771-125348019(-)$1	1	76	108	11.4607
...(((((((((((......))))))))))).	chr20:35202183-35202451(+)$1	1	25	57	10.8818
(((((((((((.((....))))).))).))))	chr17:80478106-80478375(+)$1	1	53	85	11.5110
(((...(((((.((....))..)))))..)))	chr19:2445338-2445612(-)$1	1	192	224	11.3227
(((((..(((((((....)))))))...))))	chr1:54819791-54820036(-)$1	1	167	199	11.8499
.(((((((.((.((....)).))..)))))))	chr19:4037107-4037361(+)$1	1	209	241	11.4460
((((((((((.(((....))).))))))))))	chrM:14301-14521(-)$1	1	21	53	14.3407
((((((((((.((......)))))))))))))	chr8:101963092-101963329(-)$1	1	5	37	11.8407
((((.(((((((((....)))))))))..)))	chr16:1427751-1428016(-)$1	1	62	94	13.0037
)((..(((((.(((....))).)))))..)).	chr7:1485268-1485518(-)$1	1	132	164	9.5359
...(((.((.((((....)))).)).))))))	chr1:1281641-1281933(-)$1	1	134	166	10.3658
((...(((.(((.((...)).))).)))..))	chr11:68228195-68228456(+)$1	1	121	153	9.8900
...(((.(.(((((....))))).).)))...	chr2:54197770-54198043(-)$1	1	93	125	10.5014
((((.(((.(((((....)))))))).)))))	chr5:154136560-154136852(+)$1	1	174	206	11.1338
((((.((((((.((....))..))))))..))	chr19:4036919-4037208(+)$1	1	252	284	10.9077
(((((((.((((((....)).)).))...)))	chr11:32915258-32915532(+)$1	1	169	201	10.8571
(((((((((.((((....)))).)))))....	chr19:944249-944555(+)$1	1	40	72	9.9070
((.(.((.(((((((...))))))).)).).)	chr16:85648114-85648395(+)$1	1	24	56	9.1053
((((.((((.(.((....)).).))))..)))	chr19:572616-572863(+)$1	1	162	194	9.8552
((((((((....((....))..))))))).))	chr16:88568113-88568377(+)$1	1	189	221	12.0081

#PSSM
e : 0.14	g : 0.12	= : 0.11	" : 0.11	c : 0.09	f : 0.09	d : 0.07	# : 0.03	[ : 0.03	b : 0.03	h : 0.01	i : 0.01	: : 0.01	D : 0.01	! : 0.01	a : 0.01	$ : 0.01	
e : 0.20	g : 0.18	c : 0.12	= : 0.11	d : 0.07	" : 0.05	b : 0.05	f : 0.05	# : 0.03	h : 0.01	i : 0.01	[ : 0.01	a : 0.01	$ : 0.01	
g : 0.20	c : 0.14	e : 0.14	= : 0.09	d : 0.07	" : 0.07	[ : 0.07	b : 0.05	f : 0.05	! : 0.03	i : 0.01	$ : 0.01	
g : 0.18	c : 0.16	e : 0.14	= : 0.12	f : 0.09	d : 0.07	! : 0.05	a : 0.03	" : 0.03	# : 0.01	i : 0.01	[ : 0.01	b : 0.01	
c : 0.16	g : 0.14	e : 0.14	= : 0.12	[ : 0.12	! : 0.09	f : 0.07	" : 0.03	# : 0.01	i : 0.01	d : 0.01	b : 0.01	
c : 0.22	= : 0.12	g : 0.11	e : 0.11	! : 0.09	f : 0.07	[ : 0.05	# : 0.05	i : 0.03	" : 0.03	b : 0.03	a : 0.01	d : 0.01	
c : 0.16	g : 0.16	= : 0.12	[ : 0.11	f : 0.09	e : 0.09	# : 0.05	! : 0.05	i : 0.03	b : 0.03	d : 0.03	" : 0.01	
g : 0.16	= : 0.12	c : 0.12	f : 0.09	e : 0.09	[ : 0.07	b : 0.07	d : 0.05	i : 0.03	" : 0.03	# : 0.03	! : 0.03	a : 0.03	
[ : 0.16	g : 0.14	f : 0.11	= : 0.11	e : 0.09	b : 0.09	# : 0.07	c : 0.05	d : 0.05	! : 0.03	a : 0.01	" : 0.01	i : 0.01	
e : 0.14	[ : 0.14	g : 0.12	! : 0.11	= : 0.09	c : 0.07	d : 0.07	f : 0.07	b : 0.05	# : 0.03	" : 0.01	a : 0.01	i : 0.01	
e : 0.16	d : 0.16	g : 0.12	c : 0.11	! : 0.09	[ : 0.09	f : 0.07	# : 0.03	= : 0.03	a : 0.03	b : 0.03	i : 0.01	
c : 0.24	[ : 0.14	d : 0.14	e : 0.12	g : 0.12	f : 0.05	# : 0.03	= : 0.03	b : 0.03	! : 0.01	i : 0.01	
c : 0.24	b : 0.22	d : 0.14	e : 0.12	g : 0.12	f : 0.03	= : 0.03	[ : 0.03	i : 0.01	
b : 0.24	c : 0.20	e : 0.12	d : 0.11	o : 0.09	g : 0.07	a : 0.03	f : 0.03	[ : 0.01	r : 0.01	= : 0.01	i : 0.01	
m : 0.68	o : 0.12	e : 0.03	c : 0.03	g : 0.03	b : 0.03	a : 0.01	r : 0.01	
m : 0.68	l : 0.16	o : 0.12	r : 0.01	
m : 0.68	l : 0.16	o : 0.12	r : 0.01	
m : 0.68	l : 0.16	o : 0.12	r : 0.01	
b : 0.24	c : 0.20	e : 0.12	o : 0.12	d : 0.09	g : 0.07	a : 0.05	f : 0.03	r : 0.01	i : 0.01	
b : 0.25	c : 0.24	e : 0.12	d : 0.11	g : 0.09	] : 0.05	f : 0.03	o : 0.03	r : 0.01	i : 0.01	
c : 0.25	e : 0.14	g : 0.12	d : 0.12	] : 0.11	2 : 0.07	f : 0.05	3 : 0.01	r : 0.01	= : 0.01	b : 0.01	i : 0.01	
e : 0.16	] : 0.14	d : 0.14	g : 0.12	c : 0.09	2 : 0.09	f : 0.05	b : 0.05	= : 0.03	3 : 0.01	r : 0.01	i : 0.01	a : 0.01	
e : 0.20	g : 0.14	f : 0.11	c : 0.09	d : 0.09	= : 0.09	] : 0.09	2 : 0.05	b : 0.05	3 : 0.01	a : 0.01	i : 0.01	
g : 0.14	] : 0.14	c : 0.12	= : 0.11	f : 0.11	e : 0.09	d : 0.09	2 : 0.07	b : 0.03	3 : 0.01	a : 0.01	i : 0.01	
g : 0.18	c : 0.16	= : 0.12	e : 0.09	b : 0.09	f : 0.07	d : 0.07	a : 0.05	2 : 0.05	] : 0.03	3 : 0.01	i : 0.01	
] : 0.16	c : 0.14	g : 0.14	= : 0.12	e : 0.09	f : 0.07	d : 0.05	b : 0.05	3 : 0.05	2 : 0.03	i : 0.03	
c : 0.16	g : 0.14	= : 0.12	e : 0.12	] : 0.11	f : 0.07	3 : 0.07	2 : 0.05	i : 0.03	b : 0.03	a : 0.01	d : 0.01	
c : 0.16	= : 0.12	] : 0.12	g : 0.11	e : 0.11	2 : 0.11	f : 0.07	3 : 0.07	b : 0.03	d : 0.01	i : 0.01	a : 0.01	
c : 0.20	e : 0.16	= : 0.12	g : 0.12	2 : 0.11	d : 0.05	3 : 0.05	] : 0.05	f : 0.03	i : 0.01	b : 0.01	4 : 0.01	
e : 0.18	g : 0.18	c : 0.14	= : 0.12	d : 0.07	b : 0.05	f : 0.03	] : 0.03	2 : 0.03	3 : 0.01	i : 0.01	h : 0.01	6 : 0.01	4 : 0.01	a : 0.01	
e : 0.20	g : 0.20	= : 0.12	d : 0.07	c : 0.07	3 : 0.05	b : 0.05	f : 0.05	2 : 0.03	i : 0.01	a : 0.01	h : 0.01	6 : 0.01	4 : 0.01	] : 0.01	
g : 0.16	e : 0.14	= : 0.11	d : 0.09	] : 0.09	3 : 0.07	b : 0.05	f : 0.05	c : 0.03	2 : 0.03	i : 0.01	D : 0.01	5 : 0.01	: : 0.01	h : 0.01	6 : 0.01	4 : 0.01	

#score	592.3900591098089
#seq	54
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF014MZO_POLR2G_transcript_m3_run2.txt

#BEAR
hhh[eeeeepppppppeeeee333h	chr1:2186242-2186541(+)$1	299	195	220	12.0295
ddd[ddddqqqqqqqqdddd]dddd	chr19:893459-893690(+)$1	231	140	165	8.8436
####eeeeepppppppeeeee4444	chr16:89469764-89470052(-)$1	288	188	213	12.9694
iiiii[bbqqqqqqqqbbiiiiiii	chr16:81480760-81481007(+)$1	247	23	48	9.9635
####eeeeepppppppeeeeeffff	chr21:47567392-47567659(-)$1	267	94	119	12.3987
ee"""cccqqqqqqqqccc]eeeee	chr2:153258775-153259051(+)$1	276	59	84	10.4376
bbgggggggpppppppggggggg]b	chr1:2190194-2190447(+)$1	253	154	179	11.5728
d####ddddpppppppdddddddd]	chr6:35844301-35844526(-)$1	225	143	168	11.8500
eeeee!!bbpppppppbb22eeeee	chr17:79958903-79959171(+)$1	268	44	69	11.4018
eee"""cccpppppppccc333eee	chr20:34325012-34325253(-)$1	241	19	44	12.8593
=====ddddpppppppdddd333==	chr7:5462126-5462405(-)$1	279	10	35	12.7493
cc[ffffffpppppppffffff333	chr3:32870242-32870496(+)$1	254	132	157	11.7159
ee!!eeeeepppppppeeeee]eee	chr17:18965300-18965552(+)$1	252	170	195	12.5842
%%ccc[cccpppppppcccccc666	chr16:89460571-89460864(-)$1	293	209	234	10.2801
eeee[a[aqqqqqqqqa]a]eeeee	chr19:937409-937693(+)$1	284	89	114	9.4947
!!gggggggpppppppggggggg33	chr16:89586011-89586265(+)$1	254	106	131	12.8835
f[ccc[bbqqqqqqqqbbccc]fff	chr2:11423267-11423495(-)$1	228	161	186	9.4634
beeeeecccpppppppccc]eeeee	chr14:39742462-39742719(+)$1	257	150	175	12.2814
[dddd[bbqqqqqqqqbbddddeee	chr22:42335505-42335762(-)$1	257	48	73	9.0712
[affffffrrrrrrrrrffffff]a	chr10:114711999-114712260(+)$1	261	88	113	10.1196
!!dddd[bbpppppppbb]dddd22	chr20:62516973-62517228(+)$1	255	151	176	11.3033
g:gggggggrrrrrrrrrggggggg	chr7:5460343-5460576(-)$1	233	142	167	9.5886
===!!ddddqqqqqqqqdddd>>>>	chr17:72761901-72762201(+)$1	300	89	114	8.8489
=========qqqqqqqq========	chr20:17946168-17946419(-)$1	251	58	83	10.2137
iiiiiiiiipppppppiiiiiiiii	chr14:39736282-39736540(+)$1	258	126	151	12.5524
f"""eeeeepppppppeeeee333f	chr22:42335889-42336179(-)$1	290	133	158	13.0238
iiccc[bbqqqqqqqqbbcccdddd	chr14:39735943-39736229(+)$1	286	209	234	9.1963
ddd[ddddqqqqqqqqdddd]dddd	chr2:236413819-236414085(+)$1	266	194	219	8.8436
ffffffcccpppppppccc]fffff	chr16:68144122-68144372(+)$1	250	142	167	11.7436
ffff[cccqqqqqqqqcccffffff	chr13:98868337-98868586(+)$1	249	95	120	9.2689

#otherMatches

#Seq PSSM
GUGCUGUGGACUGGCACCACACCCC	chr1:2186242-2186541(+)$1	299	195	220	12.0295
uccauuuucccucccagaaacggaa	chr19:893459-893690(+)$1	231	140	165	8.8436
CUUACUGAGAAACUUCCUCGGGACU	chr16:89469764-89470052(-)$1	288	188	213	12.9694
UGGAGACCCCAGAUCUGGCUUCAGA	chr16:81480760-81481007(+)$1	247	23	48	9.9635
UUUGUCUUCUUUACCUGAAGGGCCC	chr21:47567392-47567659(-)$1	267	94	119	12.3987
GCAUGAAGUAUCUUUCCUUAGCAGG	chr2:153258775-153259051(+)$1	276	59	84	10.4376
GCCCUUGAGUGUUUGCCUCGGGGUG	chr1:2190194-2190447(+)$1	253	154	179	11.5728
gccguggcaugaucucugcucacug	chr6:35844301-35844526(-)$1	225	143	168	11.8500
CCGGCCCUCUGUGGCUGACAGCCGG	chr17:79958903-79959171(+)$1	268	44	69	11.4018
gcuuaagcgauucuuccgccucagc	chr20:34325012-34325253(-)$1	241	19	44	12.8593
UUUGUAACCAAAACCGGGUUAAAAU	chr7:5462126-5462405(-)$1	279	10	35	12.7493
cccaguucacugaucuugaacucuu	chr3:32870242-32870496(+)$1	254	132	157	11.7159
ACUAGCUCGUAAACUCCGGGCCGUU	chr17:18965300-18965552(+)$1	252	170	195	12.5842
CACUGUGGAACUGCAGUCCCAGAAC	chr16:89460571-89460864(-)$1	293	209	234	10.2801
guacacguuuuuaugugggcguacg	chr19:937409-937693(+)$1	284	89	114	9.4947
UUGUGGAGAAGGCCCCUUUCCACUG	chr16:89586011-89586265(+)$1	254	106	131	12.8835
gcaaccuccgccuccugaguuccag	chr2:11423267-11423495(-)$1	228	161	186	9.4634
guggcaugaucaugauucacugccg	chr14:39742462-39742719(+)$1	257	150	175	12.2814
UAGAGCAGUCUUGUCCCUCUCUGGC	chr22:42335505-42335762(-)$1	257	48	73	9.0712
CUCUGAGGCGUCCUUUUCUUUGGCA	chr10:114711999-114712260(+)$1	261	88	113	10.1196
AGUUGCUAGUCAUGAUCUUGCGAGA	chr20:62516973-62517228(+)$1	255	151	176	11.3033
CACCGGGGGCGAUUCCAAUCCCCGG	chr7:5460343-5460576(-)$1	233	142	167	9.5886
UAUUUUCUCUUUCAGUUGAGGCAGG	chr17:72761901-72762201(+)$1	300	89	114	8.8489
UUUGGCCAUAGGUAGAAAUGGCCAA	chr20:17946168-17946419(-)$1	251	58	83	10.2137
GUGCGGGUCGGGCUCGGACCUGCGC	chr14:39736282-39736540(+)$1	258	126	151	12.5524
uggggagcugcuggagggcuugggg	chr22:42335889-42336179(-)$1	290	133	158	13.0238
GUGCGGCUCACACGACAGCGCGGAG	chr14:39735943-39736229(+)$1	286	209	234	9.1963
AUGGAUUGAGUGAGGGCAGUGUGUG	chr2:236413819-236414085(+)$1	266	194	219	8.8436
acaguggcccaaucucggcucacug	chr16:68144122-68144372(+)$1	250	142	167	11.7436
CAGCAUUUUUAUUGGUGGAGCUGAU	chr13:98868337-98868586(+)$1	249	95	120	9.2689

#DB
(((.(((((.......)))))...)	chr1:2186242-2186541(+)$1	1	195	220	12.0295
(((.((((........)))).))))	chr19:893459-893690(+)$1	1	140	165	8.8436
....(((((.......)))))....	chr16:89469764-89470052(-)$1	1	188	213	12.9694
(((((.((........)))))))))	chr16:81480760-81481007(+)$1	1	23	48	9.9635
....(((((.......)))))))))	chr21:47567392-47567659(-)$1	1	94	119	12.3987
((...(((........))).)))))	chr2:153258775-153259051(+)$1	1	59	84	10.4376
(((((((((.......))))))).)	chr1:2190194-2190447(+)$1	1	154	179	11.5728
(....((((.......)))))))).	chr6:35844301-35844526(-)$1	1	143	168	11.8500
(((((..((.......))..)))))	chr17:79958903-79959171(+)$1	1	44	69	11.4018
(((...(((.......)))...)))	chr20:34325012-34325253(-)$1	1	19	44	12.8593
(((((((((.......))))...))	chr7:5462126-5462405(-)$1	1	10	35	12.7493
((.((((((.......))))))...	chr3:32870242-32870496(+)$1	1	132	157	11.7159
((..(((((.......))))).)))	chr17:18965300-18965552(+)$1	1	170	195	12.5842
..(((.(((.......))))))...	chr16:89460571-89460864(-)$1	1	209	234	10.2801
((((.(.(........).).)))))	chr19:937409-937693(+)$1	1	89	114	9.4947
..(((((((.......)))))))..	chr16:89586011-89586265(+)$1	1	106	131	12.8835
(.(((.((........))))).)))	chr2:11423267-11423495(-)$1	1	161	186	9.4634
(((((((((.......))).)))))	chr14:39742462-39742719(+)$1	1	150	175	12.2814
.((((.((........)))))))))	chr22:42335505-42335762(-)$1	1	48	73	9.0712
.(((((((.........)))))).)	chr10:114711999-114712260(+)$1	1	88	113	10.1196
..((((.((.......)).))))..	chr20:62516973-62517228(+)$1	1	151	176	11.3033
).(((((((.........)))))))	chr7:5460343-5460576(-)$1	1	142	167	9.5886
(((..((((........))))....	chr17:72761901-72762201(+)$1	1	89	114	8.8489
(((((((((........))))))))	chr20:17946168-17946419(-)$1	1	58	83	10.2137
(((((((((.......)))))))))	chr14:39736282-39736540(+)$1	1	126	151	12.5524
(...(((((.......)))))...)	chr22:42335889-42336179(-)$1	1	133	158	13.0238
))(((.((........)))))((((	chr14:39735943-39736229(+)$1	1	209	234	9.1963
(((.((((........)))).))))	chr2:236413819-236414085(+)$1	1	194	219	8.8436
(((((((((.......))).)))))	chr16:68144122-68144372(+)$1	1	142	167	11.7436
((((.(((........)))))))))	chr13:98868337-98868586(+)$1	1	95	120	9.2689

#PSSM
e : 0.16	f : 0.13	d : 0.10	i : 0.10	= : 0.10	# : 0.06	b : 0.06	! : 0.06	[ : 0.06	h : 0.03	c : 0.03	% : 0.03	g : 0.03	
e : 0.19	d : 0.10	# : 0.10	i : 0.10	= : 0.10	! : 0.06	f : 0.06	h : 0.03	b : 0.03	c : 0.03	% : 0.03	[ : 0.03	a : 0.03	: : 0.03	" : 0.03	
d : 0.13	e : 0.13	# : 0.10	g : 0.10	= : 0.10	c : 0.10	f : 0.10	i : 0.06	" : 0.06	h : 0.03	[ : 0.03	! : 0.03	
f : 0.13	[ : 0.10	# : 0.10	" : 0.10	g : 0.10	e : 0.10	c : 0.10	i : 0.06	= : 0.06	! : 0.06	d : 0.06	
e : 0.23	d : 0.13	g : 0.10	f : 0.10	c : 0.10	i : 0.06	" : 0.06	= : 0.06	[ : 0.06	# : 0.03	! : 0.03	
e : 0.19	d : 0.19	[ : 0.16	g : 0.10	f : 0.10	c : 0.06	! : 0.03	" : 0.03	a : 0.03	= : 0.03	i : 0.03	
c : 0.19	e : 0.16	d : 0.16	b : 0.13	g : 0.10	f : 0.06	[ : 0.06	! : 0.03	= : 0.03	i : 0.03	
b : 0.19	c : 0.19	e : 0.16	d : 0.16	g : 0.10	f : 0.06	a : 0.03	= : 0.03	i : 0.03	
q : 0.30	e : 0.16	c : 0.13	g : 0.10	d : 0.10	b : 0.06	f : 0.03	r : 0.03	= : 0.03	i : 0.03	
p : 0.56	q : 0.36	r : 0.06	
p : 0.56	q : 0.36	r : 0.06	
p : 0.56	q : 0.36	r : 0.06	
p : 0.56	q : 0.36	r : 0.06	
p : 0.56	q : 0.36	r : 0.06	
p : 0.56	q : 0.36	r : 0.06	
p : 0.56	q : 0.36	r : 0.06	
b : 0.19	c : 0.19	e : 0.16	d : 0.13	g : 0.06	r : 0.06	q : 0.06	f : 0.03	a : 0.03	i : 0.03	
b : 0.19	c : 0.19	e : 0.16	d : 0.16	g : 0.06	f : 0.06	] : 0.03	r : 0.03	= : 0.03	i : 0.03	
c : 0.26	d : 0.19	e : 0.16	g : 0.10	i : 0.06	f : 0.06	2 : 0.03	a : 0.03	] : 0.03	= : 0.03	
d : 0.23	e : 0.16	] : 0.13	g : 0.10	f : 0.10	c : 0.10	i : 0.06	2 : 0.03	3 : 0.03	= : 0.03	
e : 0.30	d : 0.13	f : 0.13	g : 0.10	c : 0.10	] : 0.06	i : 0.06	3 : 0.06	= : 0.03	
d : 0.19	f : 0.16	3 : 0.13	e : 0.13	g : 0.10	i : 0.06	] : 0.06	4 : 0.03	c : 0.03	> : 0.03	= : 0.03	
e : 0.23	d : 0.16	f : 0.16	3 : 0.13	g : 0.10	i : 0.06	4 : 0.03	6 : 0.03	> : 0.03	= : 0.03	
e : 0.23	3 : 0.13	d : 0.13	f : 0.13	i : 0.06	] : 0.06	= : 0.06	4 : 0.03	6 : 0.03	2 : 0.03	g : 0.03	> : 0.03	
e : 0.23	f : 0.16	d : 0.10	i : 0.06	= : 0.06	3 : 0.06	h : 0.03	4 : 0.03	b : 0.03	] : 0.03	6 : 0.03	a : 0.03	2 : 0.03	g : 0.03	> : 0.03	

#score	329.55433748596
#seq	30
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_CDS_m1_run1.txt

#BEAR
!ccc!!dddd[ddddooooooddddddddccc]ddd	chr7:138764488-138764796(-)$1	308	50	86	15.1875
eeee!!ccc!!ddddoooooodddd]ccc]eeeee:	chr16:30976099-30976334(+)$1	235	144	180	15.5543
eee"""ccc!!ddddmmmmddddccc333eeeee]c	chr11:293273-293477(+)$1	204	113	149	12.5533
eee"""eeeee[cccooooooccc333eeeee]eee	chr21:33057817-33058046(-)$1	229	165	201	15.1976
gggg[ccc[cccddddnnnnndddd]ccc]cccggg	chr7:106508454-106508705(+)$1	251	86	122	14.1516
hhhhh!!eeeee[cccooooooccc22eeeee22hh	chr3:123679893-123680169(-)$1	276	156	192	12.9910
ddddddd####ddddoooooodddd4444dddd]dd	chr1:16254755-16255008(+)$1	253	131	167	17.5116
ddd"""dddd"""cccnnnnnccc333dddd]dddd	chr11:9595783-9596093(+)$1	310	266	302	14.3427
========!!a[a[annnnna]a]a22=========	chr21:34143722-34143993(-)$1	271	116	152	14.9440
[dddd[bb####cccooooooccc4444bbdddd]a	chr2:27263563-27263822(+)$1	259	112	148	16.2788
===========ddddoooooodddd22=========	chr7:97498270-97498495(-)$1	225	149	185	18.2984
b[ccc"""dddd[aooooooa]dddd]cccbb22cc	chrX:151123292-151123566(-)$1	274	167	203	13.3924
ddffffff"""ddddoooooodddd4444ffffff2	chr4:139153307-139153579(-)$1	272	10	46	16.1171
fff[bb"""ccc[cccnnnnnccc4444ccc333bb	chr21:34924879-34925105(+)$1	226	93	129	13.8424
========ddddrrrrrrrrrdddd22=========	chr19:13049479-13049687(+)$1	208	138	174	13.0883
ee[===============lll===============	chr16:4475810-4476052(+)$1	242	98	134	12.9082
ccc!!==========oooooo==========22ccc	chr8:23429221-23429452(+)$1	231	142	178	15.3208
ggggg$$$$$eeeeeooooooeeeee4444gggggg	chr19:17160595-17160845(-)$1	250	196	232	14.5509
ffffffddddeeeeeooooooeeeee4444dddd]f	chr2:27607698-27607918(-)$1	220	97	133	12.6940
iiiiiiiii####bboooooobb333iiiiiiiii:	chr11:3380952-3381229(-)$1	277	179	215	14.4687
g!!bb[dddd[ddddoooooodddd]dddd]bb22g	chr4:2733477-2733726(+)$1	249	20	56	14.2167
c[dddd[a"""eeeeemmmmeeeee333adddd]cc	chr10:104679623-104679894(+)$1	271	91	127	12.4165
[dddd&&&&&&&cccooooooccc4444dddd]ccc	chr19:49376921-49377140(+)$1	219	108	144	13.0097
ddiiiiiiiii"""ddddllldddd22iiiiiiiii	chr12:98909736-98910002(+)$1	266	213	249	13.4296
!ddddccccccaddddllldddd]a]ccc]ccc]dd	chr8:128750643-128750897(+)$1	254	124	160	11.7975
:ddddccc####cccooooooccc4444ccc]dddd	chr16:88600064-88600330(+)$1	266	32	68	16.0539
fffff####ccc[aooooooa]ccc22ffffffccc	chr17:7751514-7751772(+)$1	258	145	181	13.7211
dccc[bb####eeeeennnnneeeee4444bb]ccc	chr3:193332578-193332929(+)$1	351	151	187	13.2383
[bb[bb[dddd[ddddnnnnndddd22ddddbb]bb	chr17:80706627-80706907(+)$1	280	233	269	12.5356
ccc[ggggggg[cccoooooocccggggggg333cc	chr22:22123368-22123623(-)$1	255	26	62	14.7655
ee[bb[eeeeeddddoooooodddd]eeeeebbeee	chr1:23346077-23346374(+)$1	297	255	291	13.3709
ggggggg"""ccccccooooooccc]ccc4444ggg	chr7:148705205-148705429(-)$1	224	173	209	14.9612
dddd"""ccc[ddddooooooddddccc333dddd4	chr1:11856194-11856483(-)$1	289	225	261	16.2161
dd!!eeeee"""cccooooooccc]eeeee]ddddD	chr7:12409410-12409689(-)$1	279	194	230	13.4654
hhh"""bb[a!!ddddnnnnndddd22a]bbhhhhh	chr2:170684334-170684586(+)$1	252	102	138	13.9355
fffffccc[bbddddoooooodddd4444bb22ccc	chr16:727688-727951(+)$1	263	28	64	15.4127
odddd:ccc!!ddddoooooodddd22cccdddd""	chr21:34922970-34923206(+)$1	236	81	117	15.4995
dddd!!ccc!!eeeeemmmmeeeee4444ccc22dd	chr17:45924884-45925137(-)$1	253	146	182	12.4975
cbbbb!!ccc!!ddddnnnnndddd22ccc22bb]b	chr1:1249174-1249409(-)$1	235	180	216	13.7384
==========!!cccooooooccc333=========	chr20:62663245-62663469(+)$1	224	10	46	18.3928
dddd[dddd!!ddddoooooodddd]dddd]ddddc	chr2:48573697-48573945(+)$1	248	72	108	15.6412
[bb[dddd####cccooooooccc4444dddd]bb]	chr19:49377020-49377293(+)$1	273	9	45	15.7506
b[ccc"""bb!!ddddnnnnndddd22bb]ccc]bb	chr16:67228610-67228885(+)$1	275	101	137	14.4186
=========="""bboooooobb============B	chrX:70764359-70764592(+)$1	233	77	113	14.6043
ddddffffff!!ddddnnnnndddd22ffffff22d	chr3:152554345-152554604(+)$1	259	202	238	13.1509
e[bb!!eeeee[ddddnnnnndddd22eeeee22bb	chr11:66999105-66999354(+)$1	249	56	92	13.3471
dddd[dddd"""ccc[allla]ccc333dddddddd	chr19:12902693-12902899(+)$1	206	32	68	14.2790
ddddd[ccc"""cccnnnnnccc4444ccc]dddd]	chr6:109703396-109703609(-)$1	213	74	110	14.2454
ggggggg####ddddoooooodddd333ggggggg7	chr11:14666478-14666748(+)$1	270	184	220	17.8552
[ccc[a[ccc[ddddnnnnndddd]ccc333a]ccc	chrX:49126678-49126940(+)$1	262	15	51	13.7505
%ggggggg####ddddnnnnndddd333ggggggg3	chr19:11242058-11242348(+)$1	290	115	151	15.8075
ee[a[ccc!!a!!cccooooooccc22a22ccc]a]	chrX:39933895-39934132(-)$1	237	99	135	15.4571
ggggg"""bb[ddddoooooodddd4444bb333gg	chrX:48386736-48386975(+)$1	239	26	62	17.4147
ddddccc####ccc[ammmma]ccc22ccc333ddd	chr12:122247883-122248129(+)$1	246	208	244	13.7346

#otherMatches

#Seq PSSM
AGGCUACUGAUCUUGGAGGAACAAGUCAGGCCGGGA	chr7:138764488-138764796(-)$1	308	50	86	15.1875
GAGCCCCUUUUGCUGAAAAUACAGCUGAGCGCUUCC	chr16:30976099-30976334(+)$1	235	144	180	15.5543
GGCCCAGGACCUGGGUCUUCCCAUCCCCAGCCAGUG	chr11:293273-293477(+)$1	204	113	149	12.5533
GGUACACUAAAUUGUCUGUGAACAUACUUUAGAGCC	chr21:33057817-33058046(-)$1	229	165	201	15.1976
GGCUUGGUGACCCCGCGCAUGGCGGAGGUGGCCAGC	chr7:106508454-106508705(+)$1	251	86	122	14.1516
GGUCUGGAGCUCGACCGGGCCAGGUGAGGGCUGAGG	chr3:123679893-123680169(-)$1	276	156	192	12.9910
GAGAGGAGGCCGAUUGAACGAAGUCAAAGUCCUGUU	chr1:16254755-16255008(+)$1	253	131	167	17.5116
GCCCAAGGUGAGAgcggcgggcgcgggcacccggcg	chr11:9595783-9596093(+)$1	310	266	302	14.3427
CCGCCGGGCACGGGCGAAGAGGCGGGCCCCGGUGGC	chr21:34143722-34143993(-)$1	271	116	152	14.9440
UGGGCACUUGCCCUGAUAUCCCAGCAGUAGGCCCUG	chr2:27263563-27263822(+)$1	259	112	148	16.2788
CAACUGCUGCUUUGGAUUUCACCGGUUGGCGGUAGU	chr7:97498270-97498495(-)$1	225	149	185	18.2984
GUAGCCCUGAGGGUCCCCGCAGCCUCUGCUCCAAGC	chrX:151123292-151123566(-)$1	274	167	203	13.3924
GUGGUUAACCUAAAUAUAUACAUUUUUUUUUAGCCC	chr4:139153307-139153579(-)$1	272	10	46	16.1171
GUGCCACCUUUGCCUCCUGAAGAGCCCCCAACAAUG	chr21:34924879-34925105(+)$1	226	93	129	13.8424
CGACGCGGCCGGCCCCCGAUCCUGGAUCUGCGUUGU	chr19:13049479-13049687(+)$1	208	138	174	13.0883
GUUGCUGGUGGUUGUGGGGACCCCGCGGCUGCCGGC	chr16:4475810-4476052(+)$1	242	98	134	12.9082
ACUAAAGGAAGGGAUCAUAGAAUCUUUUCUUAAAGU	chr8:23429221-23429452(+)$1	231	142	178	15.3208
AUAUACUACCGUAGCACUGUAGCUAUUUUUUAUGUG	chr19:17160595-17160845(-)$1	250	196	232	14.5509
GGGUCCCAGGGCCUCAAUGGGGAGGCAGGACCUGAG	chr2:27607698-27607918(-)$1	220	97	133	12.6940
UCCUUCCAAACACCAGAGAAAUGAGAUUGGAGGGAA	chr11:3380952-3381229(-)$1	277	179	215	14.4687
GCAGGUUCUGCUUGGAUUCUGCUAGACAGACCCGAC	chr4:2733477-2733726(+)$1	249	20	56	14.2167
ACCUGCUGUUUGUCAAAGACUUGGCCUUCGUGGAUC	chr10:104679623-104679894(+)$1	271	91	127	12.4165
ACCAUCACACCGGGAGUGUUGUCCAGCCGUGGAGGA	chr19:49376921-49377140(+)$1	219	108	144	13.0097
AAGGCGGGCGUUUGGCGGUUGCCGCGCGCGCUCGCC	chr12:98909736-98910002(+)$1	266	213	249	13.4296
ACGGCGGUGGCGGGAGCUUCUCCACGGCCGACCAGC	chr8:128750643-128750897(+)$1	254	124	160	11.7975
UACGUGCUUCGAGUGCGAGAUCACCUUCAGCAACGU	chr16:88600064-88600330(+)$1	266	32	68	16.0539
CAGCCGAAUUCAAGAUCCUACCUGAUGGGCUGGCCA	chr17:7751514-7751772(+)$1	258	145	181	13.7211
CUCGCAGGAAUUUUUGGCCAGCAAGAUUAGCUACGA	chr3:193332578-193332929(+)$1	351	151	187	13.2383
CGGCAGUGACUUCUCUGGGAAAGAGCUGGUCCUCUC	chr17:80706627-80706907(+)$1	280	233	269	12.5356
GCACCAUUCAAGUUCGACAUGGAAUUGGAUGACUUG	chr22:22123368-22123623(-)$1	255	26	62	14.7655
GGGCCUCAGGCCGGCCCUACUGUCGUGCCUGGGUCU	chr1:23346077-23346374(+)$1	297	255	291	13.3709
GUCCAGGUAAGCGGGCCCCUCUGCCAUGCCAGCCCU	chr7:148705205-148705429(-)$1	224	173	209	14.9612
GGGGCCCAGGAGAGCCCAUAAGCUCCCUCCACCCCA	chr1:11856194-11856483(-)$1	289	225	261	16.2161
ACUCUAGCCAACUCCAGCAUAGGAAGGCUGUGUCUU	chr7:12409410-12409689(-)$1	279	194	230	13.4654
CUGCAUGUCGCUGUGCGCCGAGUGCUUCCACCAGGG	chr2:170684334-170684586(+)$1	252	102	138	13.9355
GGAGGGCCGGGGGGCCUCUCAGCCUGCAGCCAGGGC	chr16:727688-727951(+)$1	263	28	64	15.4127
ACAACCUGUGACGACGACAGAGUUGGAGCAGCCUGU	chr21:34922970-34923206(+)$1	236	81	117	15.4995
UCGCACCUGAAGGCGCACCUGCGCUGGCACAGCGGC	chr17:45924884-45925137(-)$1	253	146	182	12.4975
GCUGUUCAUCCCCUGGACCAACCAGAAGAUCCGCAA	chr1:1249174-1249409(-)$1	235	180	216	13.7384
CUUCUGCUGGAACAGGCUGUUUUGGAGUCAGCGGAA	chr20:62663245-62663469(+)$1	224	10	46	18.3928
UAGCUGGAUUCUGGACCAUUUUCCAUAUUUUGCUAC	chr2:48573697-48573945(+)$1	248	72	108	15.6412
ACCAUCACACCGGGAGUGUUGUCCAGCCGUGGAGGA	chr19:49377020-49377293(+)$1	273	9	45	15.7506
GAAGAUUUGCUCCAGAGCCCAUCUGCUGUUUCUACA	chr16:67228610-67228885(+)$1	275	101	137	14.4186
UGACCUGGGGAACCUGCUCAAAGCCCUGGGUCGCUU	chrX:70764359-70764592(+)$1	233	77	113	14.6043
UGGCGGGAGAUACUUUCAGAAGGAGACUCUCCCGAG	chr3:152554345-152554604(+)$1	259	202	238	13.1509
UAUGAUGGACUGGGCAAAACCUGCCGAAGUCUUCCA	chr11:66999105-66999354(+)$1	249	56	92	13.3471
CCGGAGUCUCAAAGCGCCUGGGGCUCGCGGACCCGG	chr19:12902693-12902899(+)$1	206	32	68	14.2790
GCGUGCUCUGCGUGCUGUCCGCGGACAAGAACACGA	chr6:109703396-109703609(-)$1	213	74	110	14.2454
GAGUUGAAUUCGCUUAUUUCAAAGCAUGUUAACUUU	chr11:14666478-14666748(+)$1	270	184	220	17.8552
UGCCGCCCGCGCCGGGCCGUCUGGAGCGCUUGGGGC	chrX:49126678-49126940(+)$1	262	15	51	13.7505
GGUUUCUUCCUUUCCUCGUGAAGGAUAAGAGAAACA	chr19:11242058-11242348(+)$1	290	115	151	15.8075
UGCCCUGGGUCAAUCCUUACAUGGAGGGUGCCACGC	chrX:39933895-39934132(-)$1	237	99	135	15.4571
UGCUUGAUGCUGUGAAGCACCUCACUCAUGCCCAGA	chrX:48386736-48386975(+)$1	239	26	62	17.4147
CCACCGCCACAGCCGCUUUUGGGGCCCGCGACAGUG	chr12:122247883-122248129(+)$1	246	208	244	13.7346

#DB
.(((..((((.((((......))))))))))).)))	chr7:138764488-138764796(-)$1	1	50	86	15.1875
((((..(((..((((......)))).))).))))).	chr16:30976099-30976334(+)$1	1	144	180	15.5543
(((...(((..((((....)))))))...))))).)	chr11:293273-293477(+)$1	1	113	149	12.5533
(((...(((((.(((......)))...))))).)))	chr21:33057817-33058046(-)$1	1	165	201	15.1976
((((.(((.(((((((.....)))).))).))))))	chr7:106508454-106508705(+)$1	1	86	122	14.1516
(((((..(((((.(((......)))..)))))..))	chr3:123679893-123680169(-)$1	1	156	192	12.9910
(((((((....((((......))))....)))).))	chr1:16254755-16255008(+)$1	1	131	167	17.5116
(((...((((...(((.....)))...)))).))))	chr11:9595783-9596093(+)$1	1	266	302	14.3427
((((((((..(.(.(.....).).)..)))))))))	chr21:34143722-34143993(-)$1	1	116	152	14.9440
.((((.((....(((......)))....)))))).)	chr2:27263563-27263822(+)$1	1	112	148	16.2788
(((((((((((((((......))))..)))))))))	chr7:97498270-97498495(-)$1	1	149	185	18.2984
(.(((...((((.(......).)))).)))))..))	chrX:151123292-151123566(-)$1	1	167	203	13.3924
((((((((...((((......))))....)))))).	chr4:139153307-139153579(-)$1	1	10	46	16.1171
(((.((...(((.(((.....)))....)))...))	chr21:34924879-34925105(+)$1	1	93	129	13.8424
((((((((((((.........))))..)))))))))	chr19:13049479-13049687(+)$1	1	138	174	13.0883
((.(((((((((((((((...)))))))))))))))	chr16:4475810-4476052(+)$1	1	98	134	12.9082
(((..((((((((((......))))))))))..)))	chr8:23429221-23429452(+)$1	1	142	178	15.3208
(((((.....(((((......)))))....))))))	chr19:17160595-17160845(-)$1	1	196	232	14.5509
(((((((((((((((......)))))....)))).)	chr2:27607698-27607918(-)$1	1	97	133	12.6940
(((((((((....((......))...))))))))).	chr11:3380952-3381229(-)$1	1	179	215	14.4687
(..((.((((.((((......)))).)))).))..)	chr4:2733477-2733726(+)$1	1	20	56	14.2167
(.((((.(...(((((....)))))...))))).))	chr10:104679623-104679894(+)$1	1	91	127	12.4165
.((((.......(((......)))....)))).)))	chr19:49376921-49377140(+)$1	1	108	144	13.0097
(((((((((((...((((...))))..)))))))))	chr12:98909736-98910002(+)$1	1	213	249	13.4296
.(((((((((((((((...)))).).))).))).))	chr8:128750643-128750897(+)$1	1	124	160	11.7975
.(((((((....(((......)))....))).))))	chr16:88600064-88600330(+)$1	1	32	68	16.0539
(((((....(((.(......).)))..))))))(((	chr17:7751514-7751772(+)$1	1	145	181	13.7211
)(((.((....(((((.....)))))....)).)))	chr3:193332578-193332929(+)$1	1	151	187	13.2383
.((.((.((((.((((.....))))..)))))).))	chr17:80706627-80706907(+)$1	1	233	269	12.5356
(((.(((((((.(((......))))))))))...))	chr22:22123368-22123623(-)$1	1	26	62	14.7655
((.((.(((((((((......)))).))))))))))	chr1:23346077-23346374(+)$1	1	255	291	13.3709
(((((((...((((((......))).)))....)))	chr7:148705205-148705429(-)$1	1	173	209	14.9612
((((...(((.((((......)))))))...)))).	chr1:11856194-11856483(-)$1	1	225	261	16.2161
((..(((((...(((......))).))))).)))))	chr7:12409410-12409689(-)$1	1	194	230	13.4654
(((...((.(..((((.....))))..).)))))))	chr2:170684334-170684586(+)$1	1	102	138	13.9355
((((((((.((((((......))))....))..)))	chr16:727688-727951(+)$1	1	28	64	15.4127
.)))).(((..((((......))))..)))((((..	chr21:34922970-34923206(+)$1	1	81	117	15.4995
((((..(((..(((((....)))))....)))..))	chr17:45924884-45925137(-)$1	1	146	182	12.4975
(((((..(((..((((.....))))..)))..)).)	chr1:1249174-1249409(-)$1	1	180	216	13.7384
((((((((((..(((......)))...)))))))))	chr20:62663245-62663469(+)$1	1	10	46	18.3928
((((.((((..((((......)))).)))).))))(	chr2:48573697-48573945(+)$1	1	72	108	15.6412
.((.((((....(((......)))....)))).)).	chr19:49377020-49377293(+)$1	1	9	45	15.7506
(.(((...((..((((.....))))..)).))).))	chr16:67228610-67228885(+)$1	1	101	137	14.4186
((((((((((...((......))))))))))))))(	chrX:70764359-70764592(+)$1	1	77	113	14.6043
((((((((((..((((.....))))..))))))..)	chr3:152554345-152554604(+)$1	1	202	238	13.1509
(.((..(((((.((((.....))))..)))))..))	chr11:66999105-66999354(+)$1	1	56	92	13.3471
((((.((((...(((.(...).)))...))))))))	chr19:12902693-12902899(+)$1	1	32	68	14.2790
(((((.(((...(((.....)))....))).)))).	chr6:109703396-109703609(-)$1	1	74	110	14.2454
(((((((....((((......))))...))))))).	chr11:14666478-14666748(+)$1	1	184	220	17.8552
.(((.(.(((.((((.....)))).)))...).)))	chrX:49126678-49126940(+)$1	1	15	51	13.7505
.(((((((....((((.....))))...))))))).	chr19:11242058-11242348(+)$1	1	115	151	15.8075
((.(.(((..(..(((......)))..)..))).).	chrX:39933895-39934132(-)$1	1	99	135	15.4571
(((((...((.((((......))))....))...))	chrX:48386736-48386975(+)$1	1	26	62	17.4147
(((((((....(((.(....).)))..)))...)))	chr12:122247883-122248129(+)$1	1	208	244	13.7346

#PSSM
d : 0.24	e : 0.12	g : 0.11	= : 0.09	[ : 0.09	f : 0.07	c : 0.07	! : 0.03	h : 0.03	b : 0.03	i : 0.01	: : 0.01	o : 0.01	% : 0.01	
d : 0.31	e : 0.11	g : 0.11	c : 0.09	= : 0.09	[ : 0.07	f : 0.07	b : 0.05	h : 0.03	i : 0.01	! : 0.01	
d : 0.27	c : 0.12	g : 0.11	= : 0.09	f : 0.09	b : 0.07	e : 0.05	[ : 0.05	h : 0.03	i : 0.03	! : 0.03	
d : 0.25	g : 0.11	= : 0.11	c : 0.09	" : 0.07	f : 0.07	[ : 0.07	b : 0.07	! : 0.03	i : 0.03	e : 0.01	h : 0.01	a : 0.01	
d : 0.16	[ : 0.11	= : 0.11	g : 0.11	! : 0.09	" : 0.09	f : 0.09	b : 0.09	c : 0.05	i : 0.03	h : 0.01	e : 0.01	
" : 0.14	= : 0.12	! : 0.11	c : 0.11	d : 0.09	[ : 0.07	g : 0.07	f : 0.05	b : 0.05	i : 0.03	$ : 0.01	& : 0.01	# : 0.01	e : 0.01	: : 0.01	a : 0.01	
c : 0.20	d : 0.14	= : 0.12	" : 0.09	e : 0.07	g : 0.07	b : 0.05	[ : 0.05	! : 0.03	f : 0.03	i : 0.03	$ : 0.01	& : 0.01	# : 0.01	
c : 0.24	d : 0.14	= : 0.12	e : 0.09	# : 0.09	" : 0.09	b : 0.03	f : 0.03	i : 0.03	g : 0.03	$ : 0.01	a : 0.01	& : 0.01	
d : 0.16	c : 0.16	# : 0.16	e : 0.09	= : 0.09	" : 0.07	[ : 0.05	! : 0.03	i : 0.03	b : 0.03	$ : 0.01	& : 0.01	g : 0.01	f : 0.01	
# : 0.16	d : 0.12	! : 0.12	c : 0.12	" : 0.11	= : 0.09	e : 0.07	b : 0.05	$ : 0.01	& : 0.01	i : 0.01	g : 0.01	a : 0.01	f : 0.01	
! : 0.18	# : 0.16	" : 0.12	e : 0.11	[ : 0.09	c : 0.09	= : 0.05	d : 0.05	a : 0.03	& : 0.01	i : 0.01	g : 0.01	b : 0.01	
d : 0.31	e : 0.11	" : 0.11	! : 0.11	[ : 0.09	c : 0.09	# : 0.09	= : 0.03	& : 0.01	a : 0.01	
d : 0.44	c : 0.22	e : 0.09	[ : 0.07	" : 0.05	= : 0.03	a : 0.01	r : 0.01	# : 0.01	! : 0.01	
d : 0.44	c : 0.29	e : 0.09	a : 0.03	= : 0.03	b : 0.03	[ : 0.01	r : 0.01	" : 0.01	
d : 0.46	c : 0.27	e : 0.09	o : 0.03	= : 0.03	b : 0.03	a : 0.01	r : 0.01	[ : 0.01	
o : 0.51	d : 0.18	c : 0.09	n : 0.05	e : 0.05	m : 0.01	r : 0.01	= : 0.01	[ : 0.01	a : 0.01	
o : 0.57	n : 0.25	m : 0.07	r : 0.01	= : 0.01	d : 0.01	l : 0.01	a : 0.01	
o : 0.57	n : 0.25	m : 0.07	l : 0.03	r : 0.01	= : 0.01	d : 0.01	
o : 0.57	n : 0.25	m : 0.07	l : 0.07	r : 0.01	
o : 0.57	n : 0.25	l : 0.05	m : 0.05	d : 0.03	r : 0.01	
o : 0.53	n : 0.20	a : 0.09	d : 0.05	l : 0.03	e : 0.03	r : 0.01	c : 0.01	
d : 0.48	c : 0.20	] : 0.09	e : 0.09	o : 0.05	= : 0.03	b : 0.03	
d : 0.49	c : 0.31	e : 0.09	= : 0.03	b : 0.03	a : 0.01	
d : 0.46	c : 0.31	e : 0.09	= : 0.05	] : 0.03	3 : 0.01	4 : 0.01	
d : 0.44	c : 0.12	4 : 0.11	e : 0.09	3 : 0.07	= : 0.05	a : 0.03	] : 0.03	g : 0.01	
2 : 0.27	4 : 0.20	3 : 0.14	] : 0.12	e : 0.07	c : 0.05	= : 0.05	d : 0.03	g : 0.01	
2 : 0.27	4 : 0.25	3 : 0.14	c : 0.11	d : 0.05	= : 0.05	e : 0.03	] : 0.01	i : 0.01	g : 0.01	
4 : 0.24	c : 0.20	= : 0.12	d : 0.09	3 : 0.09	e : 0.09	i : 0.03	f : 0.03	a : 0.03	g : 0.01	b : 0.01	
c : 0.20	d : 0.14	4 : 0.14	= : 0.12	e : 0.09	3 : 0.05	g : 0.05	b : 0.03	i : 0.03	f : 0.03	a : 0.01	] : 0.01	2 : 0.01	
c : 0.16	d : 0.16	= : 0.12	e : 0.11	] : 0.07	b : 0.07	4 : 0.07	f : 0.05	g : 0.05	i : 0.03	3 : 0.03	2 : 0.01	
d : 0.18	c : 0.14	= : 0.12	e : 0.11	b : 0.09	g : 0.07	] : 0.07	f : 0.05	3 : 0.05	i : 0.03	4 : 0.01	2 : 0.01	
d : 0.22	c : 0.11	= : 0.11	e : 0.09	b : 0.09	3 : 0.07	f : 0.05	2 : 0.05	g : 0.05	] : 0.03	i : 0.03	4 : 0.01	h : 0.01	a : 0.01	
d : 0.22	] : 0.11	2 : 0.11	= : 0.11	c : 0.07	3 : 0.07	b : 0.07	f : 0.05	g : 0.05	e : 0.03	i : 0.03	4 : 0.01	h : 0.01	
d : 0.22	2 : 0.11	] : 0.11	= : 0.11	c : 0.11	g : 0.09	e : 0.07	3 : 0.05	i : 0.03	b : 0.03	f : 0.01	h : 0.01	
d : 0.22	c : 0.16	g : 0.11	= : 0.11	b : 0.09	] : 0.07	e : 0.05	h : 0.03	i : 0.03	2 : 0.03	f : 0.01	" : 0.01	a : 0.01	
c : 0.20	d : 0.16	g : 0.09	= : 0.09	b : 0.09	] : 0.05	: : 0.03	e : 0.03	h : 0.03	a : 0.01	2 : 0.01	f : 0.01	i : 0.01	4 : 0.01	D : 0.01	" : 0.01	B : 0.01	7 : 0.01	3 : 0.01	

#score	785.5273611502049
#seq	54
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_CDS_m2_run2.txt

#BEAR
gg[a!!ddddnnnnndddd22a]g	chr16:425032-425243(-)$1	211	99	123	15.9206
cc####cccooooooccc333ccc	chr17:62265587-62265876(-)$1	289	199	223	11.5273
dddd[ddddoooooodddd]dddd	chr11:2154738-2154944(-)$1	206	90	114	12.5508
ffffffddddnnnnndddd22fff	chr2:55461227-55461440(+)$1	213	53	77	13.6971
ffff"""cccnnnnnccc333fff	chr12:1005196-1005454(+)$1	258	87	111	11.6697
dddd[ddddoooooodddd]dddd	chr11:2154746-2154952(-)$1	206	98	122	12.5508
dddd[ddddoooooodddddddd3	chr10:51580591-51580796(+)$1	205	47	71	11.8497
::ccc[ddddnnnnndddd]ccch	chr11:2154700-2154904(-)$1	204	10	34	12.5748
i[cccddddoooooodddd22ccc	chr9:130648676-130648964(-)$1	288	80	104	13.4285
eeeee!!cccnnnnnccc22eeee	chr6:133135815-133136018(+)$1	203	145	169	11.1318
#dddd!!cccnnnnncccddddcc	chr3:183896583-183896803(+)$1	220	83	107	11.0425
b[ddddddddnnnnndddd]dddd	chr12:53854740-53854957(+)$1	217	159	183	13.5578
:dddd[ddddnnnnndddd]dddd	chr2:27278539-27278877(+)$1	338	11	35	13.1700
eeee[ddddoooooodddd333ee	chr7:98565008-98565257(+)$1	249	92	116	13.3563
ffffffddddnnnnndddd333ff	chr12:53852966-53853179(+)$1	213	96	120	13.8193
gggg"""cccnnnnncccgggggg	chr6:31616587-31616790(-)$1	203	92	116	11.1058
eeee[ddddoooooodddd]eeee	chr19:58905948-58906150(+)$1	202	80	104	12.3850
dd[a!!ddddnnnnndddd22add	chr11:2156609-2156813(-)$1	204	83	107	16.0883
))))))ddddnnnnndddd4444e	chr12:56481299-56481524(+)$1	225	52	76	11.7496
cc####ddddnnnnndddd22ccc	chr5:135382935-135383153(+)$1	218	131	155	16.0840
:eeeee[cccnnnnnccc333eee	chr2:21242671-21242877(-)$1	206	34	58	10.6256
ddd!!ccc[annnnna]ccc]ddd	chr12:120638434-120638653(-)$1	219	51	75	11.1075
cc"""ddddoooooodddd333cc	chr3:53260790-53260994(-)$1	204	145	169	14.0284
hhhhhhddddnnnnndddd]hhhh	chr16:18800228-18800444(-)$1	216	108	132	12.2614
::ccc[ddddnnnnndddd]ccch	chr11:2154704-2154908(-)$1	204	14	38	12.5748
""a[a[ddddnnnnndddda]add	chr19:39924061-39924263(-)$1	202	163	187	14.4199
gggggddddoooooodddd]gggg	chr6:133137502-133137707(+)$1	205	96	120	12.1329
eeccc[ddddnnnnnddddccc33	chr8:117670972-117671279(-)$1	307	200	224	13.8148
c[ccc!!cccnnnnnccc]ccc]c	chr8:99054788-99055009(-)$1	221	190	214	11.2148
ccc!!ddddoooooodddd22ccc	chr3:183900503-183900760(+)$1	257	23	47	14.1424
cc####ddddnnnnndddd22ccc	chr5:135382870-135383133(+)$1	263	196	220	16.0840
[ccc[eeeeennnnneeeee]ccc	chr22:42294646-42294882(+)$1	236	44	68	11.4041
c####eeeeennnnneeeee22cc	chr14:102476212-102476436(+)$1	224	163	187	11.5809
eeeeeddddoooooodddd22eee	chr20:60962621-60962825(+)$1	204	78	102	12.7689
d!!a[eeeeennnnneeeee]a33	chr1:116929904-116930151(+)$1	247	106	130	11.5000
ccc!!ddddoooooodddd22ccc	chr19:5690429-5690634(+)$1	205	36	60	14.1424
dd[a!!ddddnnnnndddd22add	chr11:2156595-2156797(-)$1	202	67	91	16.0883
dd[a!!ddddnnnnndddd22add	chr11:2156624-2156828(-)$1	204	98	122	16.0883
dddd[ddddoooooodddddddd3	chr10:51580555-51580791(+)$1	236	83	107	11.8497
dddd!!ddddnnnnndddd22ddd	chr19:2272647-2272881(+)$1	234	47	71	15.6733
c[ccc[ddddoooooodddd]ccc	chr2:3627686-3627913(+)$1	227	172	196	12.0626
c[bb!!ddddnnnnndddd22bb]	chr4:109543220-109543455(+)$1	235	166	190	14.6831
ddd[ccccccnnnnnccc]ccc]d	chr5:149826264-149826467(-)$1	203	124	148	10.7225
eee"""ddddnnnnndddd22eee	chr22:24939709-24939975(-)$1	266	211	235	15.6429
dd"""ddddoooooodddd22ddd	chr12:122295568-122295818(-)$1	250	13	37	13.8926
ccccccddddnnnnndddd22ccc	chr7:103141196-103141414(-)$1	218	156	180	15.2321
ggg!!eeeeennnnneeeee4444	chr10:7769572-7769803(+)$1	231	176	200	11.2868
ee[bb[ddddnnnnndddd]bb]e	chr1:92149310-92149514(-)$1	204	42	66	13.2921
eeee[ddddoooooodddd]eeee	chr12:67700028-67700360(+)$1	332	10	34	12.3850
ccc[a[ddddooooooddddaccc	chr7:6624573-6624894(+)$1	321	207	231	11.9553
eeee!!ddddnnnnndddd]eeee	chr15:99901497-99901811(+)$1	314	264	288	14.5669
f####a!!ddddllldddd22aff	chr12:6646271-6646482(+)$1	211	132	156	10.4801

#otherMatches

#Seq PSSM
UGAGAAUGCUGAGUAAGUAAACCU	chr16:425032-425243(-)$1	211	99	123	15.9206
CCAAAGCAGAAGGAGCUGGCAGGC	chr17:62265587-62265876(-)$1	289	199	223	11.5273
GUUGAGGAGUGCUGUUUCCGCAGC	chr11:2154738-2154944(-)$1	206	90	114	12.5508
AUCUUUGCUGGCAAGCAGCUGGAA	chr2:55461227-55461440(+)$1	213	53	77	13.6971
AGAAGAUGCAAAGUCUGUUCAUUU	chr12:1005196-1005454(+)$1	258	87	111	11.6697
GUUGAGGAGUGCUGUUUCCGCAGC	chr11:2154746-2154952(-)$1	206	98	122	12.5508
CCUUAUUUAUCAGCUUAAAGAGGA	chr10:51580591-51580796(+)$1	205	47	71	11.8497
CAGGCCCGCAAGCCGUGUGAGCCG	chr11:2154700-2154904(-)$1	204	10	34	12.5748
GACCUAGGCCACCCAGCCUGUGGG	chr9:130648676-130648964(-)$1	288	80	104	13.4285
cggcugaggcguggggcuagagcu	chr6:133135815-133136018(+)$1	203	145	169	11.1318
CGGGUCAAUGUUAUCCAUGCCCGG	chr3:183896583-183896803(+)$1	220	83	107	11.0425
CAAACAGAUCUGCGUGGUCAUGUU	chr12:53854740-53854957(+)$1	217	159	183	13.5578
ACAGACUCACGUGGAGUGAAUCUG	chr2:27278539-27278877(+)$1	338	11	35	13.1700
GUUACAGGGAUGAGACCCUCUCUG	chr7:98565008-98565257(+)$1	249	92	116	13.3563
GCAGCUCUAUGACCAAUAGCACAG	chr12:53852966-53853179(+)$1	213	96	120	13.8193
CCCCGAUUCAGGUAUUGAGGGGCC	chr6:31616587-31616790(-)$1	203	92	116	11.1058
AGCUGUGUGUCUCCUUGCAGGGCU	chr19:58905948-58906150(+)$1	202	80	104	12.3850
GAUGCUGGUGCUUCUCACCUUCUU	chr11:2156609-2156813(-)$1	204	83	107	16.0883
CCCAACCAGGUCCCCCCUGUCAUG	chr12:56481299-56481524(+)$1	225	52	76	11.7496
CCAGCAGAUCAUUGAGAUCGAGGA	chr5:135382935-135383153(+)$1	218	131	155	16.0840
AGAAUUUGUGAUGUCCAUUUUGAU	chr2:21242671-21242877(-)$1	206	34	58	10.6256
CUGACGCACCGCCGUGAUGCCCAG	chr12:120638434-120638653(-)$1	219	51	75	11.1075
UGGACAGAAAACUCAUUCUCGACA	chr3:53260790-53260994(-)$1	204	145	169	14.0284
AUCGUCCGGUUUCUCACUGUGAUG	chr16:18800228-18800444(-)$1	216	108	132	12.2614
CAGGCCCGCAAGCCGUGUGAGCCG	chr11:2154704-2154908(-)$1	204	14	38	12.5748
CUGUGUGAUUAUCUAAAUCCUCGU	chr19:39924061-39924263(-)$1	202	163	187	14.4199
GGCGCCAAGCCCAUCUUUGUGUGC	chr6:133137502-133137707(+)$1	205	96	120	12.1329
AUUGAAGAAUCUGUCGUUCUCAUU	chr8:117670972-117671279(-)$1	307	200	224	13.8148
UCUGGACAAGUAUUUCUUACUACG	chr8:99054788-99055009(-)$1	221	190	214	11.2148
UUGUCCCUGUGUUCCCAGGAUCAA	chr3:183900503-183900760(+)$1	257	23	47	14.1424
CCAGCAGAUCAUUGAGAUCGAGGA	chr5:135382870-135383133(+)$1	263	196	220	16.0840
ACUGUGGCCAUCAGCUGGCUCCAG	chr22:42294646-42294882(+)$1	236	44	68	11.4041
UUUCCGCACUGCUGAAGUGCUUGC	chr14:102476212-102476436(+)$1	224	163	187	11.5809
CCACGCAUCCAUCCAGAUGAACGU	chr20:60962621-60962825(+)$1	204	78	102	12.7689
GCUCUUUGGGGGGUUCUCAAUGUU	chr1:116929904-116930151(+)$1	247	106	130	11.5000
GGAACUGAGCCGGUACUCACCUCC	chr19:5690429-5690634(+)$1	205	36	60	14.1424
GAUGCUGGUGCUUCUCACCUUCUU	chr11:2156595-2156797(-)$1	202	67	91	16.0883
GAUGCUGGUGCUUCUCACCUUCUU	chr11:2156624-2156828(-)$1	204	98	122	16.0883
CCUUAUUUAUCAGCUUAAAGAGGA	chr10:51580555-51580791(+)$1	236	83	107	11.8497
GGUGGGUCGGGCCAGCCGAGACGC	chr19:2272647-2272881(+)$1	234	47	71	15.6733
UCAACAUUUUAUCAUGGAAAGGUU	chr2:3627686-3627913(+)$1	227	172	196	12.0626
CCUAACAAGUCUUGAACUUACUGA	chr4:109543220-109543455(+)$1	235	166	190	14.6831
GCUGGGUGGUAGAAAACCUGCUGG	chr5:149826264-149826467(-)$1	203	124	148	10.7225
UGUUCUGUAUGCCCAGUGCCCACA	chr22:24939709-24939975(-)$1	266	211	235	15.6429
GGCUAGGGGACAUCACUCCACCCG	chr12:122295568-122295818(-)$1	250	13	37	13.8926
AAGGGAACAGUGCAUCUGUGAUCC	chr7:103141196-103141414(-)$1	218	156	180	15.2321
GUCUCGCUGAUCAUUUUGGUUUCU	chr10:7769572-7769803(+)$1	231	176	200	11.2868
AAUGCACAUACAUAAUAUGCGUCU	chr1:92149310-92149514(-)$1	204	42	66	13.2921
CUUUCUCAUCUCCUAGUGAAGAAG	chr12:67700028-67700360(+)$1	332	10	34	12.3850
GUGAGCACCACUUUUCUGGUCCAC	chr7:6624573-6624894(+)$1	321	207	231	11.9553
AACAUUGUGCUUGGUGCACCUGUU	chr15:99901497-99901811(+)$1	314	264	288	14.5669
GAGAAGCGGCCAGCCUGGCACCCU	chr12:6646271-6646482(+)$1	211	132	156	10.4801

#DB
((.(..((((.....))))..).)	chr16:425032-425243(-)$1	1	99	123	15.9206
((....(((......)))...)))	chr17:62265587-62265876(-)$1	1	199	223	11.5273
((((.((((......)))).))))	chr11:2154738-2154944(-)$1	1	90	114	12.5508
((((((((((.....))))..)))	chr2:55461227-55461440(+)$1	1	53	77	13.6971
((((...(((.....)))...)))	chr12:1005196-1005454(+)$1	1	87	111	11.6697
((((.((((......)))).))))	chr11:2154746-2154952(-)$1	1	98	122	12.5508
((((.((((......)))))))).	chr10:51580591-51580796(+)$1	1	47	71	11.8497
..(((.((((.....)))).)))(	chr11:2154700-2154904(-)$1	1	10	34	12.5748
(.(((((((......))))..)))	chr9:130648676-130648964(-)$1	1	80	104	13.4285
(((((..(((.....)))..))))	chr6:133135815-133136018(+)$1	1	145	169	11.1318
.((((..(((.....)))))))))	chr3:183896583-183896803(+)$1	1	83	107	11.0425
(.((((((((.....)))).))))	chr12:53854740-53854957(+)$1	1	159	183	13.5578
.((((.((((.....)))).))))	chr2:27278539-27278877(+)$1	1	11	35	13.1700
((((.((((......))))...))	chr7:98565008-98565257(+)$1	1	92	116	13.3563
((((((((((.....))))...))	chr12:53852966-53853179(+)$1	1	96	120	13.8193
((((...(((.....)))))))))	chr6:31616587-31616790(-)$1	1	92	116	11.1058
((((.((((......)))).))))	chr19:58905948-58906150(+)$1	1	80	104	12.3850
((.(..((((.....))))..)))	chr11:2156609-2156813(-)$1	1	83	107	16.0883
......((((.....))))....)	chr12:56481299-56481524(+)$1	1	52	76	11.7496
((....((((.....))))..)))	chr5:135382935-135383153(+)$1	1	131	155	16.0840
.(((((.(((.....)))...)))	chr2:21242671-21242877(-)$1	1	34	58	10.6256
(((..(((.(.....).))).)))	chr12:120638434-120638653(-)$1	1	51	75	11.1075
((...((((......))))...))	chr3:53260790-53260994(-)$1	1	145	169	14.0284
((((((((((.....)))).))))	chr16:18800228-18800444(-)$1	1	108	132	12.2614
..(((.((((.....)))).)))(	chr11:2154704-2154908(-)$1	1	14	38	12.5748
..(.(.((((.....))))).)))	chr19:39924061-39924263(-)$1	1	163	187	14.4199
(((((((((......)))).))))	chr6:133137502-133137707(+)$1	1	96	120	12.1329
(((((.((((.....)))))))..	chr8:117670972-117671279(-)$1	1	200	224	13.8148
(.(((..(((.....))).))).)	chr8:99054788-99055009(-)$1	1	190	214	11.2148
(((..((((......))))..)))	chr3:183900503-183900760(+)$1	1	23	47	14.1424
((....((((.....))))..)))	chr5:135382870-135383133(+)$1	1	196	220	16.0840
.(((.(((((.....))))).)))	chr22:42294646-42294882(+)$1	1	44	68	11.4041
(....(((((.....)))))..))	chr14:102476212-102476436(+)$1	1	163	187	11.5809
(((((((((......))))..)))	chr20:60962621-60962825(+)$1	1	78	102	12.7689
(..(.(((((.....))))).)..	chr1:116929904-116930151(+)$1	1	106	130	11.5000
(((..((((......))))..)))	chr19:5690429-5690634(+)$1	1	36	60	14.1424
((.(..((((.....))))..)))	chr11:2156595-2156797(-)$1	1	67	91	16.0883
((.(..((((.....))))..)))	chr11:2156624-2156828(-)$1	1	98	122	16.0883
((((.((((......)))))))).	chr10:51580555-51580791(+)$1	1	83	107	11.8497
((((..((((.....))))..)))	chr19:2272647-2272881(+)$1	1	47	71	15.6733
(.(((.((((......)))).)))	chr2:3627686-3627913(+)$1	1	172	196	12.0626
(.((..((((.....))))..)).	chr4:109543220-109543455(+)$1	1	166	190	14.6831
(((.((((((.....))).))).)	chr5:149826264-149826467(-)$1	1	124	148	10.7225
(((...((((.....))))..)))	chr22:24939709-24939975(-)$1	1	211	235	15.6429
((...((((......))))..)))	chr12:122295568-122295818(-)$1	1	13	37	13.8926
)))(((((((.....))))..)))	chr7:103141196-103141414(-)$1	1	156	180	15.2321
(((..(((((.....)))))....	chr10:7769572-7769803(+)$1	1	176	200	11.2868
((.((.((((.....)))).)).)	chr1:92149310-92149514(-)$1	1	42	66	13.2921
((((.((((......)))).))))	chr12:67700028-67700360(+)$1	1	10	34	12.3850
(((.(.((((......))))))))	chr7:6624573-6624894(+)$1	1	207	231	11.9553
((((..((((.....)))).))))	chr15:99901497-99901811(+)$1	1	264	288	14.5669
(....(..((((...))))..)))	chr12:6646271-6646482(+)$1	1	132	156	10.4801

#PSSM
c : 0.23	d : 0.23	e : 0.17	g : 0.07	f : 0.07	: : 0.07	i : 0.01	# : 0.01	b : 0.01	) : 0.01	h : 0.01	" : 0.01	[ : 0.01	
d : 0.24	e : 0.19	c : 0.17	[ : 0.09	g : 0.07	f : 0.05	: : 0.03	# : 0.03	) : 0.01	h : 0.01	" : 0.01	! : 0.01	
c : 0.21	d : 0.19	e : 0.15	[ : 0.09	# : 0.09	f : 0.05	g : 0.05	" : 0.03	) : 0.01	h : 0.01	a : 0.01	! : 0.01	b : 0.01	
d : 0.15	c : 0.15	e : 0.13	a : 0.09	# : 0.09	! : 0.07	f : 0.05	" : 0.05	[ : 0.05	g : 0.03	b : 0.03	) : 0.01	h : 0.01	
! : 0.21	[ : 0.17	c : 0.15	# : 0.09	" : 0.09	e : 0.05	d : 0.05	f : 0.03	a : 0.03	) : 0.01	h : 0.01	g : 0.01	b : 0.01	
d : 0.28	! : 0.19	[ : 0.15	e : 0.09	# : 0.05	" : 0.05	c : 0.05	f : 0.03	) : 0.01	h : 0.01	a : 0.01	
d : 0.73	! : 0.07	e : 0.07	c : 0.05	" : 0.03	[ : 0.01	
d : 0.73	c : 0.17	e : 0.07	! : 0.01	
d : 0.75	c : 0.15	e : 0.07	[ : 0.01	
d : 0.48	o : 0.28	c : 0.13	e : 0.07	a : 0.01	
n : 0.65	o : 0.32	d : 0.01	
n : 0.65	o : 0.32	d : 0.01	
n : 0.65	o : 0.32	l : 0.01	
n : 0.65	o : 0.32	l : 0.01	
n : 0.65	o : 0.32	l : 0.01	
d : 0.71	c : 0.15	e : 0.07	o : 0.03	a : 0.01	
d : 0.75	c : 0.15	e : 0.07	] : 0.01	
d : 0.75	c : 0.17	e : 0.07	
d : 0.76	e : 0.07	3 : 0.05	] : 0.03	2 : 0.01	g : 0.01	c : 0.01	
2 : 0.34	] : 0.23	3 : 0.11	d : 0.09	c : 0.07	e : 0.07	g : 0.01	4 : 0.01	a : 0.01	
2 : 0.34	d : 0.13	3 : 0.11	c : 0.09	] : 0.09	e : 0.07	g : 0.03	4 : 0.03	h : 0.01	b : 0.01	a : 0.01	
c : 0.28	d : 0.19	a : 0.13	e : 0.13	3 : 0.05	f : 0.03	g : 0.03	4 : 0.03	b : 0.03	h : 0.01	2 : 0.01	
c : 0.28	d : 0.24	e : 0.15	] : 0.07	f : 0.07	g : 0.03	4 : 0.03	3 : 0.03	h : 0.01	b : 0.01	
c : 0.26	d : 0.23	e : 0.19	f : 0.07	3 : 0.07	g : 0.05	h : 0.05	] : 0.01	4 : 0.01	

#score	678.966428633577
#seq	52
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_UTR_m2_run1.txt

#BEAR
""ddddtttttttttttdddd	chr12:56634793-56635055(-)$1	262	139	160	21.8716
fffffuuuuuuuuuuuuffff	chr3:183901563-183901903(+)$1	340	117	138	22.1248
!!cccyyyyyyyyyyyyyyyy	chr16:11966625-11966890(-)$1	265	125	146	20.4133
c[cccuuuuuuuuuuuucccc	chr19:41859027-41859283(-)$1	256	143	164	23.7222
eeeeevvvvvvvvvvvvveee	chr17:40946789-40947216(+)$1	427	104	125	22.2552
fffffvvvvvvvvvvvvvfff	chr19:36279310-36279603(+)$1	293	213	234	22.2061
[dddduuuuuuuuuuuudddd	chr1:27481086-27481383(-)$1	297	242	263	22.8573
&dddduuuuuuuuuuuudddd	chr1:27634279-27634542(+)$1	263	56	77	22.2944
ggggwwwwwwwwwwwwwwggg	chr22:38062070-38062375(+)$1	305	50	71	21.8523
fffffvvvvvvvvvvvvvfff	chr19:13064115-13064463(+)$1	348	204	225	22.2061
b!!ccctttttttttttccc2	chr12:120653752-120654047(-)$1	295	214	235	22.1324
d[cccvvvvvvvvvvvvvccc	chr7:139044822-139045125(+)$1	303	42	63	23.4391
##cccuuuuuuuuuuuuccc3	chr12:132569338-132569645(+)$1	307	207	228	23.7288
$$cccuuuuuuuuuuuuccc6	chrX:47074239-47074524(+)$1	285	115	136	22.9614
ffcccuuuuuuuuuuuuccc]	chr11:64895223-64895488(-)$1	265	238	259	23.2796
eeeeewwwwwwwwwwwwwwee	chr19:19289806-19290103(-)$1	297	163	184	21.0166
hhhhhuuuuuuuuuuuuhhhh	chr19:38742411-38742748(-)$1	337	135	156	21.0490
b!!bbtttttttttttbb22b	chr15:89442433-89442707(-)$1	274	198	219	19.7633
gggggvvvvvvvvvvvvvggg	chrX:53263724-53264071(-)$1	347	189	210	22.8314
ccc[atttttttttttaccci	chr19:3467194-3467517(+)$1	323	149	170	22.2262
[dddduuuuuuuuuuuudddd	chr22:19754410-19754674(+)$1	264	96	117	22.8573
fffffuuuuuuuuuuuuffff	chr20:48698530-48698856(-)$1	326	88	109	22.1248
fffffftttttttttttffff	chr9:139728249-139728573(+)$1	324	193	214	20.9177
d[bbyyyyyyyyyyyyyyyyb	chr20:32667801-32668096(+)$1	295	237	258	19.5773
eeeeevvvvvvvvvvvvveee	chr13:114538807-114539095(-)$1	288	113	134	22.2552
ddd[auuuuuuuuuuuua]dd	chr1:36805916-36806251(-)$1	335	141	162	22.8552
g[bbvvvvvvvvvvvvvbb]g	chr7:72416686-72416954(+)$1	268	66	87	21.8650
$$cccvvvvvvvvvvvvvccc	chr6:33421217-33421466(+)$1	249	10	31	23.2298
fffffftttttttttttffff	chr17:48211275-48211531(-)$1	256	71	92	20.9177
$$$ccctttttttttttccc6	chr17:80708893-80709151(+)$1	258	109	130	21.5549
""cccuuuuuuuuuuuuccc5	chr19:41313448-41313800(+)$1	352	10	31	23.0183
::cccuuuuuuuuuuuuccc:	chr1:151030645-151030960(-)$1	315	261	282	20.6605
$$cccuuuuuuuuuuuuccc6	chrX:47074324-47074605(+)$1	281	30	51	22.9614
e[bbwwwwwwwwwwwwwwbbe	chr2:68479205-68479500(-)$1	295	95	116	21.0259
eeeeevvvvvvvvvvvvveee	chr12:53845976-53846223(+)$1	247	184	205	22.2552
ddddvvvvvvvvvvvvvdddd	chr1:160231769-160232107(-)$1	338	141	162	22.2390
gggggvvvvvvvvvvvvvggg	chrX:133930968-133931244(-)$1	276	122	143	22.8314
&dddduuuuuuuuuuuudddd	chr6:31500577-31500817(-)$1	240	117	138	22.2944
ffffwwwwwwwwwwwwwwfff	chr17:27084374-27084685(-)$1	311	277	298	21.2826
iiiiiitttttttttttiiii	chr5:176910325-176910595(-)$1	270	211	232	21.3289
dddccctttttttttttccc]	chr7:100286352-100286607(-)$1	255	114	135	22.1722
ddddwwwwwwwwwwwwwwddd	chr2:74588300-74588621(-)$1	321	11	32	21.6520
cccyyyyyyyyyyyyyyyycc	chr19:56173198-56173445(+)$1	247	159	180	20.2697
hhhccctttttttttttccc7	chr1:36806372-36806627(-)$1	255	23	44	21.2912
gggggvvvvvvvvvvvvvggg	chrX:133930873-133931136(-)$1	263	14	35	22.8314
c[ddddtttttttttttdddd	chr7:151878132-151878444(-)$1	312	201	222	21.8167
"""ccctttttttttttccc2	chr19:3465860-3466124(+)$1	264	124	145	22.3314
cccbbuuuuuuuuuuuubb]c	chr16:2871158-2871473(+)$1	315	227	248	22.1863
ffffwwwwwwwwwwwwwwfff	chrX:109417512-109417757(+)$1	245	6	27	21.2826
dyyyyyyyyyyyyyyyydddd	chr16:28847999-28848227(+)$1	228	192	213	19.1508
##cccattttttttttta]cc	chrX:152995012-152995331(+)$1	319	152	173	22.9354
:cccwwwwwwwwwwwwwwccc	chr11:66010861-66011119(+)$1	258	81	102	21.2551
"""bbyyyyyyyyyyyyyyyy	chr20:44576413-44576744(+)$1	331	135	156	19.5857
[dddduuuuuuuuuuuudddd	chr11:73964685-73964991(+)$1	306	7	28	22.8573
"dddduuuuuuuuuuuudddd	chr6:43472867-43473148(+)$1	281	227	248	22.8706
c[cccuuuuuuuuuuuucccc	chr8:144351338-144351721(+)$1	383	170	191	23.7222
ddddwwwwwwwwwwwwwwddd	chr20:35411197-35411512(-)$1	315	182	203	21.6520
$dddduuuuuuuuuuuudddd	chr11:66044406-66044661(+)$1	255	15	36	22.6961
eeeeevvvvvvvvvvvvveee	chr17:17723384-17723745(-)$1	361	282	303	22.2552
=====vvvvvvvvvvvvv===	chr19:50372868-50373161(-)$1	293	204	225	22.9758
ggggguuuuuuuuuuuugggg	chr16:81744350-81744652(+)$1	302	194	215	22.7814
c[bbvvvvvvvvvvvvvbb]c	chr22:20937043-20937311(+)$1	268	190	211	21.8776
c[ddddtttttttttttdddd	chr19:51323544-51323864(-)$1	320	239	260	21.8167
ddddwwwwwwwwwwwwwwddd	chr19:50431068-50431376(-)$1	308	166	187	21.6520
ggggguuuuuuuuuuuugggg	chr1:38462645-38462992(-)$1	347	262	283	22.7814
eeeeeuuuuuuuuuuuueeee	chr19:47219617-47219941(-)$1	324	76	97	22.1534

#otherMatches

#Seq PSSM
CGUGUCCUCCCCUAUAUGACA	chr12:56634793-56635055(-)$1	262	139	160	21.8716
GUGGGUUCCCUUUCCUUCCCA	chr3:183901563-183901903(+)$1	340	117	138	22.1248
CUAGCCCUCACUUCAAACUCU	chr16:11966625-11966890(-)$1	265	125	146	20.4133
GUGGGAUACUGAGACACCCCC	chr19:41859027-41859283(-)$1	256	143	164	23.7222
CCUGGAACCCCCAUUUCCCCA	chr17:40946789-40947216(+)$1	427	104	125	22.2552
CCCCACCACCCUCCAUCCUGG	chr19:36279310-36279603(+)$1	293	213	234	22.2061
CCCCUUCCUCUAUCCCUAGGG	chr1:27481086-27481383(-)$1	297	242	263	22.8573
UCUUCUAGCUUGGUAAUGAAG	chr1:27634279-27634542(+)$1	263	56	77	22.2944
UGGCCUUAUUUCUUCCCUGUC	chr22:38062070-38062375(+)$1	305	50	71	21.8523
AGGCCCCCUCCCCAGUCUGGC	chr19:13064115-13064463(+)$1	348	204	225	22.2061
GUCCUCAGUACUGCCCCGGGC	chr12:120653752-120654047(-)$1	295	214	235	22.1324
CCGGCUCCCUUUCCGCACGCC	chr7:139044822-139045125(+)$1	303	42	63	23.4391
CUGCCUCUUGACCCCUUGGCC	chr12:132569338-132569645(+)$1	307	207	228	23.7288
CUUGUCCACCCCUCUCCACAC	chrX:47074239-47074524(+)$1	285	115	136	22.9614
GGCAGCACUGAGGGACCCUGC	chr11:64895223-64895488(-)$1	265	238	259	23.2796
CGCUGCCCUCCUCACUUCCCA	chr19:19289806-19290103(-)$1	297	163	184	21.0166
CUCCCUUCCCCACCUCUGGGG	chr19:38742411-38742748(-)$1	337	135	156	21.0490
GCAGCACCACCACACAGUCAC	chr15:89442433-89442707(-)$1	274	198	219	19.7633
CAGGGCCCCAACACUAUACCU	chrX:53263724-53264071(-)$1	347	189	210	22.8314
UGGAGGAGUAGGAAGACCCAG	chr19:3467194-3467517(+)$1	323	149	170	22.2262
CGGCUCUCCCCUUCCCCAGCC	chr22:19754410-19754674(+)$1	264	96	117	22.8573
UGAUGCCCCUUCCAAACCAUC	chr20:48698530-48698856(-)$1	326	88	109	22.1248
CCAGGGAGAGAACGGGACCCU	chr9:139728249-139728573(+)$1	324	193	214	20.9177
ACCCUGACAAUAAAGAGAUUG	chr20:32667801-32668096(+)$1	295	237	258	19.5773
GGGGUUUUAGUUUCAAAUGCC	chr13:114538807-114539095(-)$1	288	113	134	22.2552
AGGCCUACCCCCCAUAUGUCC	chr1:36805916-36806251(-)$1	335	141	162	22.8552
CAGCACACCCGCAAAAAGUAG	chr7:72416686-72416954(+)$1	268	66	87	21.8650
CUGGCccccuccccccccgcc	chr6:33421217-33421466(+)$1	249	10	31	23.2298
UUUGUUCAUUUUUUAAAAACA	chr17:48211275-48211531(-)$1	256	71	92	20.9177
ccugucccccuucccccgacc	chr17:80708893-80709151(+)$1	258	109	130	21.5549
ACCUGCUUCCCUCCCUUCAGU	chr19:41313448-41313800(+)$1	352	10	31	23.0183
ACGCUUUCCCUCCACCCAGCU	chr1:151030645-151030960(-)$1	315	261	282	20.6605
CUUGUCCACCCCUCUCCACAC	chrX:47074324-47074605(+)$1	281	30	51	22.9614
ccgccuccccucccccacgcg	chr2:68479205-68479500(-)$1	295	95	116	21.0259
GUAAGCCUAAAAAUUUCCCUU	chr12:53845976-53846223(+)$1	247	184	205	22.2552
GGUCUUUUCCUUCCGCCGACC	chr1:160231769-160232107(-)$1	338	141	162	22.2390
GGUUCCCCCAGACCAUUAGAA	chrX:133930968-133931244(-)$1	276	122	143	22.8314
ccucccccccAGCCAAUGGAG	chr6:31500577-31500817(-)$1	240	117	138	22.2944
CAAAAAAAAAAAAAUGCAUUU	chr17:27084374-27084685(-)$1	311	277	298	21.2826
CCUUCCCCUGUGCAUCCGGAG	chr5:176910325-176910595(-)$1	270	211	232	21.3289
CUCCUGUCUCAGCCUCCCAGA	chr7:100286352-100286607(-)$1	255	114	135	22.1722
GCUGUCCCCUUCGACCCUCAG	chr2:74588300-74588621(-)$1	321	11	32	21.6520
gacuuccuccuccucgcucgu	chr19:56173198-56173445(+)$1	247	159	180	20.2697
GAGGCCUUUCUAGACCUGGCU	chr1:36806372-36806627(-)$1	255	23	44	21.2912
GGUUCCCCCAGACCAUUAGAA	chrX:133930873-133931136(-)$1	263	14	35	22.8314
UAGGUCCUCAAUGACAAGACC	chr7:151878132-151878444(-)$1	312	201	222	21.8167
CCCCUGUCUCUGUCUUCCAGC	chr19:3465860-3466124(+)$1	264	124	145	22.3314
UGGCCUGUAACAAGAAUGGAC	chr16:2871158-2871473(+)$1	315	227	248	22.1863
AAUGUUGAUAAUAGAUACCAU	chrX:109417512-109417757(+)$1	245	6	27	21.2826
CAUCCCCCCGUUCCCCAGGGG	chr16:28847999-28848227(+)$1	228	192	213	19.1508
CUGUCCUCAACCCAACUGCGA	chrX:152995012-152995331(+)$1	319	152	173	22.9354
cagccccuccuccuucccgcu	chr11:66010861-66011119(+)$1	258	81	102	21.2551
CAAACUCCCUCCAAGUCCCAU	chr20:44576413-44576744(+)$1	331	135	156	19.5857
UGUACCAACCUUUUCAUGUAU	chr11:73964685-73964991(+)$1	306	7	28	22.8573
agcaccccuaacacucagugc	chr6:43472867-43473148(+)$1	281	227	248	22.8706
CAUGGUUUUCAUUUUCCCCAG	chr8:144351338-144351721(+)$1	383	170	191	23.7222
UACUUCUUCCAUAAUAAUAGU	chr20:35411197-35411512(-)$1	315	182	203	21.6520
CCGUGCCCCUUUGUCCCCAUG	chr11:66044406-66044661(+)$1	255	15	36	22.6961
CGCAGUUCAGCUCCACCCCUG	chr17:17723384-17723745(-)$1	361	282	303	22.2552
GUCGUCUCUCUCCGCCUAGCG	chr19:50372868-50373161(-)$1	293	204	225	22.9758
AUGCAUGCCCGCCUCUCUGCA	chr16:81744350-81744652(+)$1	302	194	215	22.7814
CUGGACCUUUAAACACACCUG	chr22:20937043-20937311(+)$1	268	190	211	21.8776
AGAGCUUCCCACACCCUGGCU	chr19:51323544-51323864(-)$1	320	239	260	21.8167
UAGGAACUAUCUCCCAACCCU	chr19:50431068-50431376(-)$1	308	166	187	21.6520
AUCUAGACUUCUCUUUAUAGG	chr1:38462645-38462992(-)$1	347	262	283	22.7814
CUCCUUUCUGAUCUUCUGGGA	chr19:47219617-47219941(-)$1	324	76	97	22.1534

#DB
..((((...........))))	chr12:56634793-56635055(-)$1	1	139	160	21.8716
(((((............))))	chr3:183901563-183901903(+)$1	1	117	138	22.1248
..(((................	chr16:11966625-11966890(-)$1	1	125	146	20.4133
(.(((............))))	chr19:41859027-41859283(-)$1	1	143	164	23.7222
(((((.............)))	chr17:40946789-40947216(+)$1	1	104	125	22.2552
(((((.............)))	chr19:36279310-36279603(+)$1	1	213	234	22.2061
.((((............))))	chr1:27481086-27481383(-)$1	1	242	263	22.8573
.((((............))))	chr1:27634279-27634542(+)$1	1	56	77	22.2944
((((..............)))	chr22:38062070-38062375(+)$1	1	50	71	21.8523
(((((.............)))	chr19:13064115-13064463(+)$1	1	204	225	22.2061
(..(((...........))).	chr12:120653752-120654047(-)$1	1	214	235	22.1324
(.(((.............)))	chr7:139044822-139045125(+)$1	1	42	63	23.4391
..(((............))).	chr12:132569338-132569645(+)$1	1	207	228	23.7288
..(((............))).	chrX:47074239-47074524(+)$1	1	115	136	22.9614
(((((............))).	chr11:64895223-64895488(-)$1	1	238	259	23.2796
(((((..............))	chr19:19289806-19290103(-)$1	1	163	184	21.0166
(((((............))))	chr19:38742411-38742748(-)$1	1	135	156	21.0490
(..((...........))..)	chr15:89442433-89442707(-)$1	1	198	219	19.7633
(((((.............)))	chrX:53263724-53264071(-)$1	1	189	210	22.8314
(((.(...........)))))	chr19:3467194-3467517(+)$1	1	149	170	22.2262
.((((............))))	chr22:19754410-19754674(+)$1	1	96	117	22.8573
(((((............))))	chr20:48698530-48698856(-)$1	1	88	109	22.1248
((((((...........))))	chr9:139728249-139728573(+)$1	1	193	214	20.9177
(.((................)	chr20:32667801-32668096(+)$1	1	237	258	19.5773
(((((.............)))	chr13:114538807-114539095(-)$1	1	113	134	22.2552
(((.(............).))	chr1:36805916-36806251(-)$1	1	141	162	22.8552
(.((.............)).)	chr7:72416686-72416954(+)$1	1	66	87	21.8650
..(((.............)))	chr6:33421217-33421466(+)$1	1	10	31	23.2298
((((((...........))))	chr17:48211275-48211531(-)$1	1	71	92	20.9177
...(((...........))).	chr17:80708893-80709151(+)$1	1	109	130	21.5549
..(((............))).	chr19:41313448-41313800(+)$1	1	10	31	23.0183
..(((............))).	chr1:151030645-151030960(-)$1	1	261	282	20.6605
..(((............))).	chrX:47074324-47074605(+)$1	1	30	51	22.9614
(.((..............)))	chr2:68479205-68479500(-)$1	1	95	116	21.0259
(((((.............)))	chr12:53845976-53846223(+)$1	1	184	205	22.2552
((((.............))))	chr1:160231769-160232107(-)$1	1	141	162	22.2390
(((((.............)))	chrX:133930968-133931244(-)$1	1	122	143	22.8314
.((((............))))	chr6:31500577-31500817(-)$1	1	117	138	22.2944
((((..............)))	chr17:27084374-27084685(-)$1	1	277	298	21.2826
((((((...........))))	chr5:176910325-176910595(-)$1	1	211	232	21.3289
((((((...........))).	chr7:100286352-100286607(-)$1	1	114	135	22.1722
((((..............)))	chr2:74588300-74588621(-)$1	1	11	32	21.6520
(((................))	chr19:56173198-56173445(+)$1	1	159	180	20.2697
((((((...........))).	chr1:36806372-36806627(-)$1	1	23	44	21.2912
(((((.............)))	chrX:133930873-133931136(-)$1	1	14	35	22.8314
(.((((...........))))	chr7:151878132-151878444(-)$1	1	201	222	21.8167
...(((...........))).	chr19:3465860-3466124(+)$1	1	124	145	22.3314
(((((............)).)	chr16:2871158-2871473(+)$1	1	227	248	22.1863
((((..............)))	chrX:109417512-109417757(+)$1	1	6	27	21.2826
(................))))	chr16:28847999-28848227(+)$1	1	192	213	19.1508
..((((...........).))	chrX:152995012-152995331(+)$1	1	152	173	22.9354
.(((..............)))	chr11:66010861-66011119(+)$1	1	81	102	21.2551
...((................	chr20:44576413-44576744(+)$1	1	135	156	19.5857
.((((............))))	chr11:73964685-73964991(+)$1	1	7	28	22.8573
.((((............))))	chr6:43472867-43473148(+)$1	1	227	248	22.8706
(.(((............))))	chr8:144351338-144351721(+)$1	1	170	191	23.7222
((((..............)))	chr20:35411197-35411512(-)$1	1	182	203	21.6520
.((((............))))	chr11:66044406-66044661(+)$1	1	15	36	22.6961
(((((.............)))	chr17:17723384-17723745(-)$1	1	282	303	22.2552
(((((.............)))	chr19:50372868-50373161(-)$1	1	204	225	22.9758
(((((............))))	chr16:81744350-81744652(+)$1	1	194	215	22.7814
(.((.............)).)	chr22:20937043-20937311(+)$1	1	190	211	21.8776
(.((((...........))))	chr19:51323544-51323864(-)$1	1	239	260	21.8167
((((..............)))	chr19:50431068-50431376(-)$1	1	166	187	21.6520
(((((............))))	chr1:38462645-38462992(-)$1	1	262	283	22.7814
(((((............))))	chr19:47219617-47219941(-)$1	1	76	97	22.1534

#PSSM
f : 0.13	d : 0.13	c : 0.12	e : 0.10	g : 0.10	" : 0.07	$ : 0.07	[ : 0.04	& : 0.03	b : 0.03	# : 0.03	h : 0.03	: : 0.03	! : 0.01	i : 0.01	= : 0.01	
d : 0.19	f : 0.13	[ : 0.13	e : 0.09	g : 0.09	" : 0.06	$ : 0.06	c : 0.06	! : 0.04	# : 0.03	h : 0.03	: : 0.01	i : 0.01	y : 0.01	= : 0.01	
d : 0.24	c : 0.24	f : 0.12	e : 0.09	g : 0.09	b : 0.06	! : 0.03	h : 0.03	" : 0.03	$ : 0.01	i : 0.01	y : 0.01	= : 0.01	
c : 0.27	d : 0.21	f : 0.12	b : 0.10	e : 0.09	g : 0.09	[ : 0.03	y : 0.03	h : 0.01	i : 0.01	= : 0.01	
c : 0.25	d : 0.15	w : 0.12	f : 0.09	e : 0.09	g : 0.07	b : 0.04	y : 0.04	v : 0.04	a : 0.03	h : 0.01	i : 0.01	= : 0.01	
u : 0.34	v : 0.22	w : 0.13	y : 0.07	c : 0.07	d : 0.04	t : 0.03	f : 0.03	i : 0.01	a : 0.01	
u : 0.34	v : 0.22	t : 0.21	w : 0.13	y : 0.07	
u : 0.34	v : 0.22	t : 0.21	w : 0.13	y : 0.07	
u : 0.34	v : 0.22	t : 0.21	w : 0.13	y : 0.07	
u : 0.34	v : 0.22	t : 0.21	w : 0.13	y : 0.07	
u : 0.34	v : 0.22	t : 0.21	w : 0.13	y : 0.07	
u : 0.34	v : 0.22	t : 0.21	w : 0.13	y : 0.07	
u : 0.34	v : 0.22	t : 0.21	w : 0.13	y : 0.07	
u : 0.34	v : 0.22	t : 0.21	w : 0.13	y : 0.07	
u : 0.34	v : 0.22	t : 0.21	w : 0.13	y : 0.07	
u : 0.34	v : 0.22	t : 0.21	w : 0.13	y : 0.07	
u : 0.34	v : 0.22	t : 0.18	w : 0.13	y : 0.07	b : 0.01	a : 0.01	
c : 0.21	d : 0.18	v : 0.18	w : 0.13	f : 0.06	y : 0.06	b : 0.06	a : 0.03	g : 0.03	h : 0.01	i : 0.01	e : 0.01	
c : 0.25	d : 0.22	f : 0.12	g : 0.09	e : 0.07	y : 0.06	b : 0.06	] : 0.03	w : 0.01	h : 0.01	2 : 0.01	i : 0.01	= : 0.01	
c : 0.28	d : 0.24	f : 0.12	e : 0.09	g : 0.09	y : 0.04	] : 0.04	h : 0.01	2 : 0.01	b : 0.01	i : 0.01	= : 0.01	
d : 0.24	c : 0.13	f : 0.12	e : 0.10	g : 0.10	6 : 0.04	y : 0.03	2 : 0.03	] : 0.03	b : 0.03	i : 0.03	3 : 0.01	h : 0.01	5 : 0.01	: : 0.01	7 : 0.01	= : 0.01	

#score	1453.1389605199136
#seq	66
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_CDS_m3_run1.txt

#BEAR
=========[bb!!dddd####ffffff[eeee	chr17:38612653-38612912(+)$1	259	113	146	11.9086
dd[ffffff!!ffffff####a!!bb####eee	chrM:14248-14454(-)$1	206	44	77	11.8802
ff[ffffff$$$$$dddd!!ccc[a!!a[ccc[	chr3:52437747-52438007(-)$1	260	134	167	12.3190
dd[ffffff!!ffffff####a!!bb####eee	chrM:14282-14484(-)$1	202	74	107	11.8802
gggggggccc####dddd"""eeeeemmmmeee	chr15:59063581-59063877(+)$1	296	239	272	11.0836
Cdddd!!bb[a"""iiiiiiiii####gggggg	chrM:14286-14503(-)$1	217	50	83	12.0162
========="""ccc[bb"""eeeeemmmmeee	chr6:43484362-43484593(-)$1	231	138	171	10.0568
ffggggggg$$$$$a[eeeee####eeeeemmm	chrM:14175-14379(-)$1	204	81	114	10.5258
ccceeeee!!a[dddd####ccca[dddd[ggg	chr9:6645333-6645600(-)$1	267	34	67	9.7971
gg[ccc[bb[a####ffffff####bb[ddddc	chr11:118921644-118921986(-)$1	342	170	203	11.6771
Cdddd!!bb[a"""iiiiiiiii####gggggg	chrM:14310-14522(-)$1	212	69	102	12.0162
chhhhhhhh$$$$$dddd[ddddaccciiiiii	chr1:1284338-1284616(-)$1	278	55	88	9.7752
c[dddd[bb####===========[a[dddd!!	chr19:12845250-12845490(-)$1	240	108	141	12.0184
ffggggggg$$$$$a[eeeee####eeeeemmm	chrM:14190-14398(-)$1	208	100	133	10.5258
ffff"""ccc$$$$$ccc[ccc"""bb[a!!ee	chr20:4680104-4680364(+)$1	260	66	99	12.5174
##bbeeeee$$$$$eeeee"""bb[ccc"""ee	chr19:48257894-48258139(+)$1	245	39	72	11.0918
fff[dddd!!a"""eeeee!!bb"""eeeee[d	chr9:117032907-117033120(+)$1	213	113	146	11.4545
fffff!!bb$$$$$dddd"""a[a[ccceeeee	chr14:24108445-24108652(+)$1	207	38	71	15.2309
ffffff$$$$$bb!!bb####ccc[bb[ccc[b	chr12:57038552-57038815(-)$1	263	188	221	9.9426
ff[ggggggg####ccceeeee[bb[a[a[amm	chr5:1344841-1345168(-)$1	327	163	196	10.4261
[hhhhhhhh####eeeee####a!!ccc!!eee	chr12:72148773-72149139(+)$1	366	82	115	12.5680
dd[ffffff$$$$$dddd[bb[eeeee[bb[cc	chr2:171806034-171806333(+)$1	299	106	139	9.8879
dd[a"""bb####iiiiiiiii[a!!a[dddd[	chr3:195621941-195622256(-)$1	315	36	69	12.6941
fffff!!bb$$$$$dddd"""a[a[ccceeeee	chr14:24108452-24108659(+)$1	207	31	64	15.2309
======[bb[eeeee####eeeee[bb!!eeee	chr3:48699911-48700183(-)$1	272	82	115	9.9517
ddd[eeeee####eeeeedddd[dddd[eeeee	chr20:4679848-4680131(+)$1	283	203	236	10.1505
Cdddd!!bb[a"""iiiiiiiii####gggggg	chrM:14303-14506(-)$1	203	53	86	12.0162
gggggggggggggg[ccc"""a[dddd[eeeee	chr19:12845308-12845570(-)$1	262	59	92	11.7535
ceeeeeeeeee[eeeee"""dddd[bb[eeeee	chr9:136223037-136223276(-)$1	239	150	183	9.5183
dd[ffffff!!ffffff####a!!bb####eee	chrM:14274-14478(-)$1	204	68	101	11.8802
c[iiiiiiiii[a[dddd$$$$$ccclllcccd	chr5:154135327-154135600(+)$1	273	190	223	9.4853
fffff!!bb$$$$$dddd"""a[a[ccceeeee	chr14:24108459-24108662(+)$1	203	24	57	15.2309
:a[ggggggg[bb[dddd"""ggggggg!!ccc	chr3:5229580-5229836(+)$1	256	118	151	10.1242
!dddd!!eeeee"""ccc"""ccc[bb[eeeee	chr5:86564325-86564577(+)$1	252	75	108	12.2349
ffff"""ccc$$$$$ccc[ccc"""bb[a!!ee	chr20:4679931-4680249(+)$1	318	239	272	12.5174
cccffffff[cccffffff!!a[bb!!eeeeef	chr14:24114381-24114606(+)$1	225	60	93	10.0132
Cdddd!!bb[a"""iiiiiiiii####gggggg	chrM:14306-14510(-)$1	204	57	90	12.0162
Cdddd!!bb[a"""iiiiiiiii####gggggg	chrM:14271-14474(-)$1	203	21	54	12.0162
gggggg[gggggggccc"""dddd[ccc[eeee	chr6:1313139-1313414(+)$1	275	59	92	11.0817
=====[a[dddd!!dddd"""ddddllldddd3	chr19:12845183-12845450(-)$1	267	87	120	9.1361
cbbggggggg[bb!!ccc!!bb[dddd[eeeee	chr12:53421546-53421760(+)$1	214	130	163	10.4042
======[bb[ccc!!dddd[dddd!!ccczzzz	chr1:154530646-154530918(-)$1	272	168	201	9.6728
dddccc[cccccc[dddd"""ccc!!ffffff[	chr12:132414128-132414429(+)$1	301	148	181	10.3057
dd[ffffff!!ffffff####a!!bb####eee	chrM:14284-14486(-)$1	202	76	109	11.8802
=====[a[dddd!!dddd"""ddddllldddd3	chr19:12845290-12845508(-)$1	218	145	178	9.1361
ffggggggg$$$$$a[eeeee####eeeeemmm	chrM:14179-14390(-)$1	211	92	125	10.5258
eeeeebbbb[bb[ggggggg[a[a[a[eeeeec	chr3:98311943-98312234(-)$1	291	147	180	10.0894
cccffffff[cccffffff!!a[bb!!eeeeef	chr14:24114361-24114581(+)$1	220	80	113	10.0132
a[ccc!!cccccc!!ggggggg[a[ddddeeee	chr2:27306183-27306437(+)$1	254	69	102	10.6833
"""ffffff"""ccc[bb"""eeeeellleeee	chr3:196304337-196304684(+)$1	347	65	98	10.4537
eeeea!!ccc$$$$$ffffff[bb[bb[ggggg	chr20:61460738-61460952(+)$1	214	39	72	9.8754
hheeeeeeeeee!!dddd"""eeeee!!eeeee	chr13:98086459-98086832(+)$1	373	64	97	10.2930
ffff!!ccc[===========!!ccc"""eeee	chr8:91657853-91658141(-)$1	288	177	210	11.9313
[dddd!!bb$$$$$eeeee!!cccooooooccc	chrM:14375-14579(-)$1	204	123	156	10.5484
ffggggggg$$$$$a[eeeee####eeeeemmm	chrM:14166-14370(-)$1	204	72	105	10.5258

#otherMatches

#Seq PSSM
CUUCCGGGGGGCCUGGAGCCAAAGGGGGAGCUG	chr17:38612653-38612912(+)$1	259	113	146	11.9086
UUGGUGAGUGUUUUAGUGGGGUUAGCGAUGGAG	chrM:14248-14454(-)$1	206	44	77	11.8802
AGCGGUUCUGCUGAUGGGCAACUGUCAGUGCUG	chr3:52437747-52438007(-)$1	260	134	167	12.3190
UUGGUGAGUGUUUUAGUGGGGUUAGCGAUGGAG	chrM:14282-14484(-)$1	202	74	107	11.8802
CCGGACCCUGCAGCUCCUCCGCGGGUUUGGACU	chr15:59063581-59063877(+)$1	296	239	272	11.0836
UAUUGAGGAGUAUCCUGAGGCAUGGGGGUCAGG	chrM:14286-14503(-)$1	217	50	83	12.0162
CCAAGGCACCAGCUGCCAGCAGCCGGAGGGCCG	chr6:43484362-43484593(-)$1	231	138	171	10.0568
UUUAUGAAGGAGAGGGGUCAGGGUUGAUUCGGG	chrM:14175-14379(-)$1	204	81	114	10.5258
GGCCAGGAGAGGGGCCAAGAGCGCGGCUGACCC	chr9:6645333-6645600(-)$1	267	34	67	9.7971
UGACUACGAGUCCAAGGGCAUCAAGGCUCACUU	chr11:118921644-118921986(-)$1	342	170	203	11.6771
UAUUGAGGAGUAUCCUGAGGCAUGGGGGUCAGG	chrM:14310-14522(-)$1	212	69	102	12.0162
gucggggccgagagcggugcgggccgggcgggg	chr1:1284338-1284616(-)$1	278	55	88	9.7752
gucgggaucggggacgucgcccgagagcgggga	chr19:12845250-12845490(-)$1	240	108	141	12.0184
UUUAUGAAGGAGAGGGGUCAGGGUUGAUUCGGG	chrM:14190-14398(-)$1	208	100	133	10.5258
CGAGUAAGCCAAAAACCAACAUGAAGCACAUGG	chr20:4680104-4680364(+)$1	260	66	99	12.5174
CCCACCCCUGACACUGCACCCCGCCUCCCCAGG	chr19:48257894-48258139(+)$1	245	39	72	11.0918
UUGAGGGUGACAGUGGCCCCAUGGGACCUGAUG	chr9:117032907-117033120(+)$1	213	113	146	11.4545
GCUGCAGGGGGAGGGGCUGAGUGUGGCGGGCAU	chr14:24108445-24108652(+)$1	207	38	71	15.2309
GGGCAGAAUCAUGAAUGUCAUUGGAGAACCUAU	chr12:57038552-57038815(-)$1	263	188	221	9.9426
cucgcggcugagaggcgggcgggccgggggcgc	chr5:1344841-1345168(-)$1	327	163	196	10.4261
GGCUGUCGGGAGGGCGGCGCGACACUCGGGCUC	chr12:72148773-72149139(+)$1	366	82	115	12.5680
GCGAGAGACCUCAGUCACACCAAGUAACCUGUG	chr2:171806034-171806333(+)$1	299	106	139	9.8879
UGCGGGCGCUGCUUCUCUCCCUGACCGCAGCCG	chr3:195621941-195622256(-)$1	315	36	69	12.6941
GCUGCAGGGGGAGGGGCUGAGUGUGGCGGGCAU	chr14:24108452-24108659(+)$1	207	31	64	15.2309
ggggggcgguggaggccgugcagggaggcgggg	chr3:48699911-48700183(-)$1	272	82	115	9.9517
UGGUGGCUGGGGGCAGCCUCAUGGUGGUGGCUG	chr20:4679848-4680131(+)$1	283	203	236	10.1505
UAUUGAGGAGUAUCCUGAGGCAUGGGGGUCAGG	chrM:14303-14506(-)$1	203	53	86	12.0162
CGGCCUUCCCGGAGUCCUUUGCGCGGCACCUGG	chr19:12845308-12845570(-)$1	262	59	92	11.7535
CAGGUGAGGGCUGCAGGCCGGGCUGUGAUCCAG	chr9:136223037-136223276(-)$1	239	150	183	9.5183
UUGGUGAGUGUUUUAGUGGGGUUAGCGAUGGAG	chrM:14274-14478(-)$1	204	68	101	11.8802
CACCGGGCAGCAGGAGCGCGAGAGCCCGCGGCC	chr5:154135327-154135600(+)$1	273	190	223	9.4853
GCUGCAGGGGGAGGGGCUGAGUGUGGCGGGCAU	chr14:24108459-24108662(+)$1	203	24	57	15.2309
CGUGGCUGCAGCCGCCGGGGACCGGGGCAGCGC	chr3:5229580-5229836(+)$1	256	118	151	10.1242
GCAGCCGCCCCCUAUCCUGGGCUGGUGGAGACC	chr5:86564325-86564577(+)$1	252	75	108	12.2349
CGAGUAAGCCAAAAACCAACAUGAAGCACAUGG	chr20:4679931-4680249(+)$1	318	239	272	12.5174
GGCUACUCCACUCGGCUCUGAGAGGAGUGGGGG	chr14:24114381-24114606(+)$1	225	60	93	10.0132
UAUUGAGGAGUAUCCUGAGGCAUGGGGGUCAGG	chrM:14306-14510(-)$1	204	57	90	12.0162
UAUUGAGGAGUAUCCUGAGGCAUGGGGGUCAGG	chrM:14271-14474(-)$1	203	21	54	12.0162
uggcggagggcgcggaggccggggcggcggggc	chr6:1313139-1313414(+)$1	275	59	92	11.0817
cccgagagcggggacgaggaggugucgggcgcg	chr19:12845183-12845450(-)$1	267	87	120	9.1361
ACCGAGGCAGCAGAGACUAUGAUAGAGGUAAUU	chr12:53421546-53421760(+)$1	214	130	163	10.4042
CGGGGGUCGGUGCCUGGGGAUCCUGUCCGCAUC	chr1:154530646-154530918(-)$1	272	168	201	9.6728
CAGCUUCGCGCGCUGUUGGGAGCCUUCGGACGG	chr12:132414128-132414429(+)$1	301	148	181	10.3057
UUGGUGAGUGUUUUAGUGGGGUUAGCGAUGGAG	chrM:14284-14486(-)$1	202	76	109	11.8802
cccgagagcggggacgaggaggugucgggcgcg	chr19:12845290-12845508(-)$1	218	145	178	9.1361
UUUAUGAAGGAGAGGGGUCAGGGUUGAUUCGGG	chrM:14179-14390(-)$1	211	92	125	10.5258
CUGGCCACCGCCGCCUUCGGGCAUGUGCAGCGG	chr3:98311943-98312234(-)$1	291	147	180	10.0894
GGCUACUCCACUCGGCUCUGAGAGGAGUGGGGG	chr14:24114361-24114581(+)$1	220	80	113	10.0132
CCCUGUUGCCUCCUCGGGGUCCUGGGGCUGGUC	chr2:27306183-27306437(+)$1	254	69	102	10.6833
AUCGAAACCCCAUUGCUCAGAGCACUGAUGGUG	chr3:196304337-196304684(+)$1	347	65	98	10.4537
AGCCCUGACCGCAAGCUCUCUCCUGGCAGGGCC	chr20:61460738-61460952(+)$1	214	39	72	9.8754
UCGGCCCGGCCCAUGCCCAGGgccgcugcuccc	chr13:98086459-98086832(+)$1	373	64	97	10.2930
cagcagcggcggcCUCGGGCGCCCUGCUCGGCG	chr8:91657853-91658141(-)$1	288	177	210	11.9313
GGCUAUUGAGGAGUAUCCUGAGGCAUGGGGGUC	chrM:14375-14579(-)$1	204	123	156	10.5484
UUUAUGAAGGAGAGGGGUCAGGGUUGAUUCGGG	chrM:14166-14370(-)$1	204	72	105	10.5258

#DB
(((((((((.((..((((....((((((.((((	chr17:38612653-38612912(+)$1	1	113	146	11.9086
((.((((((..((((((....(..((....(((	chrM:14248-14454(-)$1	1	44	77	11.8802
((.((((((.....((((..(((.(..(.(((.	chr3:52437747-52438007(-)$1	1	134	167	12.3190
((.((((((..((((((....(..((....(((	chrM:14282-14484(-)$1	1	74	107	11.8802
((((((((((....((((...(((((....)))	chr15:59063581-59063877(+)$1	1	239	272	11.0836
(((((..((.(...(((((((((....((((((	chrM:14286-14503(-)$1	1	50	83	12.0162
(((((((((...(((.((...(((((....)))	chr6:43484362-43484593(-)$1	1	138	171	10.0568
(((((((((.....(.(((((....(((((...	chrM:14175-14379(-)$1	1	81	114	10.5258
((((((((..(.((((....((((.((((.(((	chr9:6645333-6645600(-)$1	1	34	67	9.7971
((.(((.((.(....((((((....((.(((((	chr11:118921644-118921986(-)$1	1	170	203	11.6771
(((((..((.(...(((((((((....((((((	chrM:14310-14522(-)$1	1	69	102	12.0162
(((((((((.....((((.((((((((((((((	chr1:1284338-1284616(-)$1	1	55	88	9.7752
(.((((.((....(((((((((((.(.((((..	chr19:12845250-12845490(-)$1	1	108	141	12.0184
(((((((((.....(.(((((....(((((...	chrM:14190-14398(-)$1	1	100	133	10.5258
((((...(((.....(((.(((...((.(..((	chr20:4680104-4680364(+)$1	1	66	99	12.5174
..(((((((.....(((((...((.(((...((	chr19:48257894-48258139(+)$1	1	39	72	11.0918
(((.((((..(...(((((..((...(((((.(	chr9:117032907-117033120(+)$1	1	113	146	11.4545
(((((..((.....((((...(.(.((((((((	chr14:24108445-24108652(+)$1	1	38	71	15.2309
((((((.....((..((....(((.((.(((.(	chr12:57038552-57038815(-)$1	1	188	221	9.9426
((.(((((((....((((((((.((.(.(.(..	chr5:1344841-1345168(-)$1	1	163	196	10.4261
.((((((((....(((((....(..(((..(((	chr12:72148773-72149139(+)$1	1	82	115	12.5680
((.((((((.....((((.((.(((((.((.((	chr2:171806034-171806333(+)$1	1	106	139	9.8879
((.(...((....(((((((((.(..(.((((.	chr3:195621941-195622256(-)$1	1	36	69	12.6941
(((((..((.....((((...(.(.((((((((	chr14:24108452-24108659(+)$1	1	31	64	15.2309
((((((.((.(((((....(((((.((..((((	chr3:48699911-48700183(-)$1	1	82	115	9.9517
(((.(((((....(((((((((.((((.(((((	chr20:4679848-4680131(+)$1	1	203	236	10.1505
(((((..((.(...(((((((((....((((((	chrM:14303-14506(-)$1	1	53	86	12.0162
)))))))(((((((.(((...(.((((.(((((	chr19:12845308-12845570(-)$1	1	59	92	11.7535
(((((((((((.(((((...((((.((.(((((	chr9:136223037-136223276(-)$1	1	150	183	9.5183
((.((((((..((((((....(..((....(((	chrM:14274-14478(-)$1	1	68	101	11.8802
(.(((((((((.(.((((.....(((...))))	chr5:154135327-154135600(+)$1	1	190	223	9.4853
(((((..((.....((((...(.(.((((((((	chr14:24108459-24108662(+)$1	1	24	57	15.2309
.(.(((((((.((.((((...(((((((..(((	chr3:5229580-5229836(+)$1	1	118	151	10.1242
.((((..(((((...(((...(((.((.(((((	chr5:86564325-86564577(+)$1	1	75	108	12.2349
((((...(((.....(((.(((...((.(..((	chr20:4679931-4680249(+)$1	1	239	272	12.5174
)))((((((.(((((((((..(.((..((((((	chr14:24114381-24114606(+)$1	1	60	93	10.0132
(((((..((.(...(((((((((....((((((	chrM:14306-14510(-)$1	1	57	90	12.0162
(((((..((.(...(((((((((....((((((	chrM:14271-14474(-)$1	1	21	54	12.0162
((((((.((((((((((...((((.(((.((((	chr6:1313139-1313414(+)$1	1	59	92	11.0817
(((((.(.((((..((((...((((...)))).	chr19:12845183-12845450(-)$1	1	87	120	9.1361
)))(((((((.((..(((..((.((((.(((((	chr12:53421546-53421760(+)$1	1	130	163	10.4042
((((((.((.(((..((((.((((..(((....	chr1:154530646-154530918(-)$1	1	168	201	9.6728
)))(((.((((((.((((...(((..((((((.	chr12:132414128-132414429(+)$1	1	148	181	10.3057
((.((((((..((((((....(..((....(((	chrM:14284-14486(-)$1	1	76	109	11.8802
(((((.(.((((..((((...((((...)))).	chr19:12845290-12845508(-)$1	1	145	178	9.1361
(((((((((.....(.(((((....(((((...	chrM:14179-14390(-)$1	1	92	125	10.5258
(((((((((.((.(((((((.(.(.(.((((((	chr3:98311943-98312234(-)$1	1	147	180	10.0894
)))((((((.(((((((((..(.((..((((((	chr14:24114361-24114581(+)$1	1	80	113	10.0132
(.(((..((((((..(((((((.(.((((((((	chr2:27306183-27306437(+)$1	1	69	102	10.6833
...((((((...(((.((...(((((...))))	chr3:196304337-196304684(+)$1	1	65	98	10.4537
(((((..(((.....((((((.((.((.(((((	chr20:61460738-61460952(+)$1	1	39	72	9.8754
((((((((((((..((((...(((((..(((((	chr13:98086459-98086832(+)$1	1	64	97	10.2930
((((..(((.(((((((((((..(((...((((	chr8:91657853-91658141(-)$1	1	177	210	11.9313
.((((..((.....(((((..(((......)))	chrM:14375-14579(-)$1	1	123	156	10.5484
(((((((((.....(.(((((....(((((...	chrM:14166-14370(-)$1	1	72	105	10.5258

#PSSM
f : 0.25	d : 0.14	c : 0.14	= : 0.10	C : 0.09	g : 0.07	[ : 0.03	e : 0.03	# : 0.01	: : 0.01	! : 0.01	a : 0.01	" : 0.01	h : 0.01	
d : 0.27	f : 0.25	= : 0.10	g : 0.07	c : 0.05	h : 0.05	[ : 0.05	e : 0.05	# : 0.01	a : 0.01	b : 0.01	" : 0.01	
[ : 0.18	d : 0.18	f : 0.14	g : 0.12	= : 0.10	c : 0.07	e : 0.07	h : 0.03	b : 0.03	i : 0.01	" : 0.01	
f : 0.29	g : 0.18	d : 0.14	= : 0.10	e : 0.09	c : 0.05	h : 0.03	[ : 0.03	b : 0.01	a : 0.01	i : 0.01	
f : 0.23	g : 0.18	d : 0.16	= : 0.10	e : 0.10	c : 0.05	" : 0.05	h : 0.03	i : 0.01	a : 0.01	! : 0.01	
! : 0.23	f : 0.18	g : 0.18	e : 0.09	= : 0.07	" : 0.05	c : 0.03	h : 0.03	d : 0.03	[ : 0.03	i : 0.01	b : 0.01	
! : 0.21	f : 0.16	g : 0.16	[ : 0.10	e : 0.09	" : 0.05	= : 0.03	h : 0.03	a : 0.03	d : 0.01	$ : 0.01	i : 0.01	b : 0.01	c : 0.01	
b : 0.27	f : 0.16	g : 0.16	c : 0.12	e : 0.10	= : 0.03	h : 0.03	[ : 0.03	d : 0.01	$ : 0.01	i : 0.01	
b : 0.27	f : 0.16	g : 0.16	c : 0.12	e : 0.09	= : 0.03	! : 0.03	h : 0.03	d : 0.03	$ : 0.01	i : 0.01	
[ : 0.23	$ : 0.23	! : 0.10	c : 0.10	g : 0.09	# : 0.07	e : 0.05	" : 0.03	d : 0.03	i : 0.01	
$ : 0.29	a : 0.14	# : 0.10	c : 0.09	! : 0.07	e : 0.07	b : 0.03	" : 0.03	g : 0.03	[ : 0.03	d : 0.03	i : 0.01	= : 0.01	
$ : 0.27	" : 0.14	# : 0.12	b : 0.09	c : 0.09	f : 0.07	[ : 0.05	e : 0.05	g : 0.03	d : 0.03	= : 0.01	
$ : 0.27	# : 0.12	" : 0.12	c : 0.12	! : 0.07	f : 0.07	b : 0.05	e : 0.03	g : 0.03	d : 0.01	a : 0.01	[ : 0.01	= : 0.01	
$ : 0.27	! : 0.14	" : 0.12	f : 0.10	e : 0.07	# : 0.05	g : 0.05	[ : 0.05	c : 0.03	= : 0.03	d : 0.01	i : 0.01	
d : 0.27	e : 0.12	f : 0.10	i : 0.10	c : 0.07	a : 0.07	! : 0.07	$ : 0.05	= : 0.03	# : 0.01	[ : 0.01	" : 0.01	g : 0.01	
d : 0.29	f : 0.14	c : 0.12	i : 0.10	[ : 0.10	e : 0.10	= : 0.03	g : 0.03	b : 0.01	# : 0.01	
d : 0.27	e : 0.18	f : 0.14	c : 0.12	i : 0.10	b : 0.05	# : 0.03	= : 0.03	g : 0.03	
d : 0.27	e : 0.18	# : 0.12	i : 0.10	c : 0.09	f : 0.07	b : 0.03	= : 0.03	" : 0.03	g : 0.03	
" : 0.27	# : 0.16	e : 0.14	i : 0.10	f : 0.07	[ : 0.07	! : 0.03	= : 0.03	d : 0.03	g : 0.03	$ : 0.01	
" : 0.29	# : 0.14	! : 0.10	i : 0.10	e : 0.10	f : 0.03	d : 0.03	= : 0.03	c : 0.03	g : 0.03	b : 0.01	$ : 0.01	[ : 0.01	
" : 0.25	# : 0.12	i : 0.10	e : 0.10	d : 0.09	c : 0.07	! : 0.07	f : 0.03	= : 0.03	b : 0.03	$ : 0.01	[ : 0.01	g : 0.01	
a : 0.20	c : 0.14	# : 0.12	d : 0.12	e : 0.10	i : 0.10	b : 0.03	[ : 0.03	g : 0.03	= : 0.01	" : 0.01	$ : 0.01	! : 0.01	
[ : 0.21	c : 0.10	e : 0.10	d : 0.10	! : 0.09	i : 0.09	# : 0.09	b : 0.05	" : 0.03	f : 0.01	= : 0.01	a : 0.01	$ : 0.01	g : 0.01	
# : 0.18	a : 0.14	d : 0.14	e : 0.10	c : 0.10	! : 0.09	b : 0.09	" : 0.05	f : 0.01	[ : 0.01	= : 0.01	g : 0.01	
[ : 0.25	# : 0.18	b : 0.12	e : 0.09	d : 0.09	! : 0.07	c : 0.05	" : 0.05	f : 0.01	a : 0.01	g : 0.01	o : 0.01	
b : 0.21	e : 0.16	c : 0.16	! : 0.10	# : 0.09	d : 0.09	a : 0.03	l : 0.03	f : 0.01	" : 0.01	[ : 0.01	g : 0.01	o : 0.01	
# : 0.16	b : 0.14	c : 0.14	e : 0.10	d : 0.09	! : 0.07	l : 0.07	f : 0.03	m : 0.03	[ : 0.03	a : 0.03	g : 0.01	" : 0.01	o : 0.01	
[ : 0.23	e : 0.14	c : 0.12	g : 0.10	# : 0.07	l : 0.07	d : 0.05	f : 0.03	m : 0.03	! : 0.03	a : 0.01	i : 0.01	" : 0.01	o : 0.01	
e : 0.30	d : 0.12	g : 0.10	# : 0.07	[ : 0.05	a : 0.05	! : 0.05	m : 0.03	" : 0.03	c : 0.03	l : 0.03	i : 0.01	b : 0.01	f : 0.01	o : 0.01	
e : 0.41	g : 0.10	d : 0.09	# : 0.07	! : 0.07	c : 0.05	m : 0.03	[ : 0.03	i : 0.01	" : 0.01	b : 0.01	z : 0.01	f : 0.01	o : 0.01	
e : 0.47	g : 0.12	c : 0.09	d : 0.09	m : 0.07	! : 0.03	i : 0.01	" : 0.01	a : 0.01	[ : 0.01	z : 0.01	f : 0.01	
e : 0.50	g : 0.12	c : 0.09	m : 0.09	d : 0.07	[ : 0.03	i : 0.01	! : 0.01	z : 0.01	f : 0.01	
e : 0.45	g : 0.12	m : 0.09	c : 0.09	[ : 0.05	d : 0.03	f : 0.03	3 : 0.03	i : 0.01	! : 0.01	b : 0.01	z : 0.01	

#score	613.9918182320183
#seq	55
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_UTR_m3_run2.txt

#BEAR
ffffffnnnnnffffff	chr20:23614226-23614482(-)$1	256	20	37	10.0499
fff[bboooooobbfff	chr15:25227070-25227283(+)$1	213	72	89	7.3943
ffffffqqqqqqqqfff	chr17:27050634-27050863(+)$1	229	113	130	6.2333
hh[cccnnnnnccc]hh	chr18:47017935-47018151(-)$1	216	140	157	7.0000
hh[cccnnnnnccc]hh	chr18:47017954-47018166(-)$1	212	155	172	7.0000
iiiiiinnnnniiiiii	chr11:75111376-75111580(+)$1	204	124	141	7.2013
ffffffpppppppffff	chr3:96336251-96336454(-)$1	203	2	19	7.4692
iiiiiinnnnniiiiii	chr11:75111334-75111576(+)$1	242	166	183	7.2013
eeecccnnnnnccc22e	chr15:25227040-25227245(+)$1	205	164	181	6.4409
iiiiiinnnnniiiiii	chr11:75111422-75111676(+)$1	254	78	95	7.2013
ffffffpppppppffff	chr3:96336291-96336499(-)$1	208	47	64	7.4692
ffffffpppppppffff	chr3:96336258-96336467(-)$1	209	15	32	7.4692
ffffffpppppppffff	chr3:96336254-96336458(-)$1	204	6	23	7.4692
ffffffpppppppffff	chr3:96336267-96336491(-)$1	224	39	56	7.4692
ffffffqqqqqqqqfff	chr17:27050607-27050834(+)$1	227	140	157	6.2333
fff[bboooooobbfff	chr15:25227045-25227270(+)$1	225	97	114	7.3943
[fffffflllffffff2	chr6:31802976-31803186(+)$1	210	170	187	6.2557
hh[cccnnnnnccc]hh	chr18:47017987-47018192(-)$1	205	181	198	7.0000
ffffffnnnnnffffff	chr14:95089953-95090230(+)$1	277	188	205	10.0499
ffffffnnnnnffffff	chr8:134250822-134251065(-)$1	243	191	208	10.0499
gggggoooooogggggg	chr6:31903634-31903888(+)$1	254	215	232	6.1307
ffffffqqqqqqqqfff	chr4:74279205-74279419(+)$1	214	154	171	6.2333
ffffffoooooofffff	chr3:96336128-96336392(-)$1	264	212	229	9.0838
ffffffoooooofffff	chr17:64224115-64224331(-)$1	216	39	56	9.0838
ffffffnnnnnffffff	chr20:23614428-23614687(-)$1	259	225	242	10.0499
ffffffnnnnnffffff	chr17:79803646-79803859(-)$1	213	143	160	10.0499
ccccccnnnnnccc]cc	chr8:11704493-11704767(-)$1	274	152	169	7.4583

#otherMatches

#Seq PSSM
UGGGGAAGGUCUCCCCA	chr20:23614226-23614482(-)$1	256	20	37	10.0499
UUCAUGAUGACACAGGA	chr15:25227070-25227283(+)$1	213	72	89	7.3943
UAGUCAUAAUUAACUGA	chr17:27050634-27050863(+)$1	229	113	130	6.2333
UACUGAAUGAGUUACUG	chr18:47017935-47018151(-)$1	216	140	157	7.0000
UACUGAAUGAGUUACUG	chr18:47017954-47018166(-)$1	212	155	172	7.0000
UGCUGCGUUCUGUGGCA	chr11:75111376-75111580(+)$1	204	124	141	7.2013
AUGUUAGUAUAAGUAAC	chr3:96336251-96336454(-)$1	203	2	19	7.4692
UGCUGCGUUCUGUGGCA	chr11:75111334-75111576(+)$1	242	166	183	7.2013
ACUCUGAAAUCCAGUCA	chr15:25227040-25227245(+)$1	205	164	181	6.4409
UGCUGCGUUCUGUGGCA	chr11:75111422-75111676(+)$1	254	78	95	7.2013
AUGUUAGUAUAAGUAAC	chr3:96336291-96336499(-)$1	208	47	64	7.4692
AUGUUAGUAUAAGUAAC	chr3:96336258-96336467(-)$1	209	15	32	7.4692
AUGUUAGUAUAAGUAAC	chr3:96336254-96336458(-)$1	204	6	23	7.4692
AUGUUAGUAUAAGUAAC	chr3:96336267-96336491(-)$1	224	39	56	7.4692
UAGUCAUAAUUAACUGA	chr17:27050607-27050834(+)$1	227	140	157	6.2333
UUCAUGAUGACACAGGA	chr15:25227045-25227270(+)$1	225	97	114	7.3943
CAAGAUUCCUAAUCUUU	chr6:31802976-31803186(+)$1	210	170	187	6.2557
UACUGAAUGAGUUACUG	chr18:47017987-47018192(-)$1	205	181	198	7.0000
GCAAGCCUAGAGCUUGC	chr14:95089953-95090230(+)$1	277	188	205	10.0499
AGUGGCCGGUUGCCACU	chr8:134250822-134251065(-)$1	243	191	208	10.0499
AUCACGUGAUGGUGAUG	chr6:31903634-31903888(+)$1	254	215	232	6.1307
AUAAGAAAUUAUUCUUU	chr4:74279205-74279419(+)$1	214	154	171	6.2333
CGCGGUACCCUAACCGU	chr3:96336128-96336392(-)$1	264	212	229	9.0838
ACCAUUUUCCACAGUGG	chr17:64224115-64224331(-)$1	216	39	56	9.0838
UGGGGAAGGUCUCCCCA	chr20:23614428-23614687(-)$1	259	225	242	10.0499
CGUGCCACCAGGGCACG	chr17:79803646-79803859(-)$1	213	143	160	10.0499
GGCCCCGUGGAGGGAGC	chr8:11704493-11704767(-)$1	274	152	169	7.4583

#DB
((((((.....))))))	chr20:23614226-23614482(-)$1	1	20	37	10.0499
(((.((......)))))	chr15:25227070-25227283(+)$1	1	72	89	7.3943
((((((........)))	chr17:27050634-27050863(+)$1	1	113	130	6.2333
((.(((.....))).))	chr18:47017935-47018151(-)$1	1	140	157	7.0000
((.(((.....))).))	chr18:47017954-47018166(-)$1	1	155	172	7.0000
((((((.....))))))	chr11:75111376-75111580(+)$1	1	124	141	7.2013
((((((.......))))	chr3:96336251-96336454(-)$1	1	2	19	7.4692
((((((.....))))))	chr11:75111334-75111576(+)$1	1	166	183	7.2013
((((((.....)))..)	chr15:25227040-25227245(+)$1	1	164	181	6.4409
((((((.....))))))	chr11:75111422-75111676(+)$1	1	78	95	7.2013
((((((.......))))	chr3:96336291-96336499(-)$1	1	47	64	7.4692
((((((.......))))	chr3:96336258-96336467(-)$1	1	15	32	7.4692
((((((.......))))	chr3:96336254-96336458(-)$1	1	6	23	7.4692
((((((.......))))	chr3:96336267-96336491(-)$1	1	39	56	7.4692
((((((........)))	chr17:27050607-27050834(+)$1	1	140	157	6.2333
(((.((......)))))	chr15:25227045-25227270(+)$1	1	97	114	7.3943
.((((((...)))))).	chr6:31802976-31803186(+)$1	1	170	187	6.2557
((.(((.....))).))	chr18:47017987-47018192(-)$1	1	181	198	7.0000
((((((.....))))))	chr14:95089953-95090230(+)$1	1	188	205	10.0499
((((((.....))))))	chr8:134250822-134251065(-)$1	1	191	208	10.0499
(((((......))))))	chr6:31903634-31903888(+)$1	1	215	232	6.1307
((((((........)))	chr4:74279205-74279419(+)$1	1	154	171	6.2333
((((((......)))))	chr3:96336128-96336392(-)$1	1	212	229	9.0838
((((((......)))))	chr17:64224115-64224331(-)$1	1	39	56	9.0838
((((((.....))))))	chr20:23614428-23614687(-)$1	1	225	242	10.0499
((((((.....))))))	chr17:79803646-79803859(-)$1	1	143	160	10.0499
((((((.....))).))	chr8:11704493-11704767(-)$1	1	152	169	7.4583

#PSSM
f : 0.62	h : 0.11	i : 0.11	e : 0.03	[ : 0.03	g : 0.03	c : 0.03	
f : 0.66	h : 0.11	i : 0.11	e : 0.03	g : 0.03	c : 0.03	
f : 0.66	[ : 0.11	i : 0.11	e : 0.03	g : 0.03	c : 0.03	
f : 0.59	c : 0.18	i : 0.11	[ : 0.07	g : 0.03	
f : 0.59	c : 0.18	i : 0.11	b : 0.07	g : 0.03	
f : 0.59	c : 0.18	i : 0.11	b : 0.07	o : 0.03	
n : 0.48	o : 0.18	p : 0.18	q : 0.11	f : 0.03	
n : 0.48	o : 0.18	p : 0.18	q : 0.11	l : 0.03	
n : 0.48	o : 0.18	p : 0.18	q : 0.11	l : 0.03	
n : 0.48	o : 0.18	p : 0.18	q : 0.11	l : 0.03	
n : 0.48	o : 0.18	p : 0.18	q : 0.11	f : 0.03	
f : 0.22	c : 0.18	p : 0.18	o : 0.14	q : 0.11	i : 0.11	g : 0.03	
f : 0.29	c : 0.18	p : 0.18	q : 0.11	i : 0.11	b : 0.07	g : 0.03	
f : 0.48	c : 0.18	q : 0.11	i : 0.11	b : 0.07	g : 0.03	
f : 0.66	] : 0.14	i : 0.11	2 : 0.03	g : 0.03	
f : 0.66	h : 0.11	i : 0.11	2 : 0.03	g : 0.03	c : 0.03	
f : 0.62	h : 0.11	i : 0.11	e : 0.03	2 : 0.03	g : 0.03	c : 0.03	

#score	208.14243584390732
#seq	27
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF014MZO_POLR2G_transcript_m1_run2.txt

#BEAR
cc[ffffff!!ccc[a[allla]a]ccc22ffffffcccb	chr22:42335170-42335439(-)$1	269	96	136	13.0330
####bb[ggggggg[a[cccnnnnnccc22a]gggggggb	chr17:79963668-79963934(+)$1	266	96	136	11.4249
:ggggggg[iiiiiiiiiooooooiiiiiiiiiggggggg	chr17:79958903-79959171(+)$1	268	71	111	13.3852
ccc[ccc!!cccvvvvvvvvvvvvvccc333ccc]ccc]e	chr20:34325012-34325253(-)$1	241	134	174	11.4019
"ggggggg[bb^^^^^^^^^^^^^^^^^^^bbgggggggc	chr16:89469764-89470052(-)$1	288	72	112	10.2397
ccc!!bb####eeeee[ammmma]eeeee22bbccc333e	chr7:5460343-5460576(-)$1	233	91	131	12.6901
c[eeeeeccc!!bb[bboooooobb]bb22ccc333eeee	chr16:88733846-88734138(+)$1	292	142	182	12.3239
$$$$$eeeee!!ccccccmmmmccc22ccc]eeeeedddd	chr3:32870242-32870496(+)$1	254	197	237	10.4298
eee[gggggggbb[cccooooooccc]bb]ggggggg22e	chr19:893459-893690(+)$1	231	176	216	12.7787
iiiiiii[a!!ccc[bbnnnnnbb]ccc22a]iiiiiiii	chr7:5462126-5462405(-)$1	279	120	160	14.5673
[eeeee!!ccc[bb!!ddddmmmmdddd22bbccc333ee	chr14:39735943-39736229(+)$1	286	35	75	10.8284
cggggggg[ffffffooooooffffff4444ggggggg:b	chr21:47567392-47567659(-)$1	267	124	164	11.5692
ggggggg[ccc"""bb[bblllbb]bb333cccggggggg	chr2:236459635-236459893(+)$1	258	210	250	13.7493
iiiii[bb!!bb"""cccmmmmccc]bb]bb]iiiiiiii	chr13:98868337-98868586(+)$1	249	158	198	14.4098
ddccc[dddd!!ffffffmmmmffffff333dddd]ccc]	chr16:89537872-89538126(-)$1	254	152	192	11.6837
::==========!!ddddnnnnndddd22==========:	chr1:2190194-2190447(+)$1	253	65	105	10.9742
b[a"""dddd"""addddmmmmdddd]a333dddd]a]bb	chr17:79222499-79222763(-)$1	264	41	81	13.0644
========[a[bbcccooooooccc]bb]a]=========	chr7:5458930-5459185(-)$1	255	7	47	15.3164
!ggggggg[dddd[eeeeemmmmeeeee]ddddggggggg	chr2:236413819-236414085(+)$1	266	20	60	12.0300
fffff[bb"""gggggggmmmmgggggggbb]ffffffbb	chr21:47567151-47567421(-)$1	270	86	126	11.0290
g[dddd"""dddd[ddddmmmmdddddddddddd]ggggg	chr10:114711999-114712260(+)$1	261	161	201	11.2863
ceeeee[eeeee"""cccmmmmccc]eeeeeeeeee>>>>	chr7:918435-918722(+)$1	287	76	116	10.3955
iiiiiiii[a!!dddd[ammmma]dddd22aiiiiiiiii	chr2:10284231-10284493(+)$1	262	128	168	16.2278
======$$$$$ccc!!bbmmmmbbccc55555========	chr6:35844301-35844526(-)$1	225	42	82	11.9115
eeeeee[iiiiiiiiillliiiiiiiii22eeeee22eee	chr14:39736282-39736540(+)$1	258	187	227	10.0761
ggggggg####bbcccbbmmmmbb]ccc]bb22ggggggg	chr16:68144122-68144372(+)$1	250	21	61	14.1947
$$$$ggggggg!!eeeeemmmmeeeee4444ggggggggg	chr16:81480760-81481007(+)$1	247	100	140	14.0339
ggggggg"""ccc[ddddmmmmdddd]ccc333ggggggg	chr16:89460571-89460864(-)$1	293	46	86	14.9183

#otherMatches

#Seq PSSM
GGCGUGGCUGUGGUGGGCAGUGGUGACCUGAGCUACCCCC	chr22:42335170-42335439(-)$1	269	96	136	13.0330
AUUUCCAGUGUGGGUGUGUGAGAGCCACCUCCCCCAUGCG	chr17:79963668-79963934(+)$1	266	96	136	11.4249
UGGGACUCGUGGGGCGGGGAGGAGCCUGUCCCAGGGUUUU	chr17:79958903-79959171(+)$1	268	71	111	13.3852
ggcuggucuucaacuccugaccucgugauccaccugccuu	chr20:34325012-34325253(-)$1	241	134	174	11.4019
UGGUGGUGUACUUUUUUUUUUUAAGCUACUGUCAUUGCCC	chr16:89469764-89470052(-)$1	288	72	112	10.2397
CCGUAGCGUGCUUGGCCCUCGUGAGCCGAAAGCCGGUGUG	chr7:5460343-5460576(-)$1	233	91	131	12.6901
GGUGGGCCCUGACUGGUGUUGGGGCAAGGAGGGGAAGCCC	chr16:88733846-88734138(+)$1	292	142	182	12.3239
aguacugggguuacaggcaugagccacuguccccCACUAG	chr3:32870242-32870496(+)$1	254	197	237	10.4298
ugcccaggcuggaaugcaauggcgcgaucuuagcuuguug	chr19:893459-893690(+)$1	231	176	216	12.7787
UGCUCGGGGGGCUGGGCGCGGAGUGCAGGGCGCCGGGCGG	chr7:5462126-5462405(-)$1	279	120	160	14.5673
UCCAGCGAGGCUGCGGAAGGAAAGCCUUGGGUGUCGGGGC	chr14:39735943-39736229(+)$1	286	35	75	10.8284
CUGCGGCCUGCACAGGUCUGGCUGUGCCCGUGGCUGCGug	chr21:47567392-47567659(-)$1	267	124	164	11.5692
CCGGGAAAGGUCUUCAUGUCUCACUUGUAUGCCUUCUUGG	chr2:236459635-236459893(+)$1	258	210	250	13.7493
GCCAGGCCAGCAGCAGCUGAAAGGCAUGGGGGCUGGCUGU	chr13:98868337-98868586(+)$1	249	158	198	14.4098
cccaccucuaccucccagagugcugggauuauaggcguga	chr16:89537872-89538126(-)$1	254	152	192	11.6837
acaggcgugagccaccgugccuggcGGGAGCUCAUGUUUU	chr1:2190194-2190447(+)$1	253	65	105	10.9742
CGUCAUGGCCUUUCCCUGCAGGCAGGCGUCUGGCCCGGGG	chr17:79222499-79222763(-)$1	264	41	81	13.0644
GGGGCGGCCCUGGGGUACAGAGACCAUCUGAGCUGUCCCC	chr7:5458930-5459185(-)$1	255	7	47	15.3164
GUUUUUGUUGUUUGUAGCAAUUAUGCUGAAGACACAAAAG	chr2:236413819-236414085(+)$1	266	20	60	12.0300
aggacccccugaagcugaguuuuuggcuuggaguucugga	chr21:47567151-47567421(-)$1	270	86	126	11.0290
CGGCGCACUGGCUGCGGGCUCUCCCGGGCCGCGCAGGGCA	chr10:114711999-114712260(+)$1	261	161	201	11.2863
ggccaguagacuuuacuuuuuagagcaguuuuugguuuau	chr7:918435-918722(+)$1	287	76	116	10.3955
AGGAGGUGGCAGCAGGAGCCGGCGUCUGAGGCAUCUCCUC	chr2:10284231-10284493(+)$1	262	128	168	16.2278
cuguuacuccaucuuggcuaaagcagaaAACUUGAUAGGU	chr6:35844301-35844526(-)$1	225	42	82	11.9115
UGGGCAGCGUAGGCCUGUGAGGCCUGCGGGUGCCCCUGUC	chr14:39736282-39736540(+)$1	258	187	227	10.0761
gugaucugccugccuuggccucccaaagugcuaggauuac	chr16:68144122-68144372(+)$1	250	21	61	14.1947
UUACACUCCACAAAAUGAAGGGUUGUUGGUGGUGGGGUAG	chr16:81480760-81481007(+)$1	247	100	140	14.0339
gugaucugcccgccuuggccucccaaagugcugggauuac	chr16:89460571-89460864(-)$1	293	46	86	14.9183

#DB
((.((((((..(((.(.(...).).)))..))))))))))	chr22:42335170-42335439(-)$1	1	96	136	13.0330
....((.(((((((.(.(((.....)))..).))))))))	chr17:79963668-79963934(+)$1	1	96	136	11.4249
.(((((((.(((((((((......))))))))))))))))	chr17:79958903-79959171(+)$1	1	71	111	13.3852
(((.(((..(((.............)))...))).))).)	chr20:34325012-34325253(-)$1	1	134	174	11.4019
.(((((((.((...................))))))))))	chr16:89469764-89470052(-)$1	1	72	112	10.2397
(((..((....(((((.(....).)))))..)))))...)	chr7:5460343-5460576(-)$1	1	91	131	12.6901
(.((((((((..((.((......)).))..)))...))))	chr16:88733846-88734138(+)$1	1	142	182	12.3239
.....(((((..((((((....)))..))).)))))))))	chr3:32870242-32870496(+)$1	1	197	237	10.4298
(((.(((((((((.(((......))).)).)))))))..)	chr19:893459-893690(+)$1	1	176	216	12.7787
(((((((.(..(((.((.....)).)))..).))))))))	chr7:5462126-5462405(-)$1	1	120	160	14.5673
.(((((..(((.((..((((....))))..)))))...))	chr14:39735943-39736229(+)$1	1	35	75	10.8284
)(((((((.((((((......))))))....))))))).(	chr21:47567392-47567659(-)$1	1	124	164	11.5692
(((((((.(((...((.((...)).))...))))))))))	chr2:236459635-236459893(+)$1	1	210	250	13.7493
(((((.((..((...(((....))).)).)).))))))))	chr13:98868337-98868586(+)$1	1	158	198	14.4098
(((((.((((..((((((....))))))...)))).))).	chr16:89537872-89538126(-)$1	1	152	192	11.6837
..((((((((((..((((.....))))..)))))))))).	chr1:2190194-2190447(+)$1	1	65	105	10.9742
(.(...((((...(((((....)))).)...)))).).))	chr17:79222499-79222763(-)$1	1	41	81	13.0644
((((((((.(.(((((......))).)).).)))))))))	chr7:5458930-5459185(-)$1	1	7	47	15.3164
.(((((((.((((.(((((....))))).)))))))))))	chr2:236413819-236414085(+)$1	1	20	60	12.0300
(((((.((...(((((((....))))))))).))))))))	chr21:47567151-47567421(-)$1	1	86	126	11.0290
(.((((...((((.((((....)))))))))))).)))))	chr10:114711999-114712260(+)$1	1	161	201	11.2863
((((((.(((((...(((....))).))))))))))....	chr7:918435-918722(+)$1	1	76	116	10.3955
((((((((.(..((((.(....).))))..))))))))))	chr2:10284231-10284493(+)$1	1	128	168	16.2278
((((((.....(((..((....))))).....))))))))	chr6:35844301-35844526(-)$1	1	42	82	11.9115
((((((.(((((((((...)))))))))..)))))..)))	chr14:39736282-39736540(+)$1	1	187	227	10.0761
(((((((....(((((((....)).))).))..)))))))	chr16:68144122-68144372(+)$1	1	21	61	14.1947
....(((((((..(((((....)))))....)))))))))	chr16:81480760-81481007(+)$1	1	100	140	14.0339
(((((((...(((.((((....)))).)))...)))))))	chr16:89460571-89460864(-)$1	1	46	86	14.9183

#PSSM
c : 0.21	g : 0.14	i : 0.10	: : 0.07	$ : 0.07	e : 0.07	= : 0.07	# : 0.03	" : 0.03	[ : 0.03	d : 0.03	b : 0.03	! : 0.03	f : 0.03	
g : 0.24	e : 0.14	c : 0.10	[ : 0.10	i : 0.10	$ : 0.07	= : 0.07	# : 0.03	d : 0.03	: : 0.03	f : 0.03	
g : 0.24	e : 0.17	c : 0.10	i : 0.10	= : 0.10	$ : 0.07	[ : 0.03	# : 0.03	a : 0.03	f : 0.03	d : 0.03	
g : 0.24	e : 0.14	i : 0.10	= : 0.10	f : 0.07	[ : 0.07	$ : 0.07	# : 0.03	! : 0.03	c : 0.03	" : 0.03	d : 0.03	
g : 0.32	e : 0.14	i : 0.10	= : 0.10	f : 0.07	c : 0.07	b : 0.03	! : 0.03	$ : 0.03	" : 0.03	d : 0.03	
g : 0.32	e : 0.17	[ : 0.10	= : 0.10	b : 0.07	i : 0.07	f : 0.03	c : 0.03	" : 0.03	d : 0.03	
g : 0.32	[ : 0.10	b : 0.10	e : 0.07	i : 0.07	d : 0.07	= : 0.07	f : 0.03	c : 0.03	! : 0.03	" : 0.03	$ : 0.03	
g : 0.24	! : 0.07	# : 0.07	e : 0.07	[ : 0.07	b : 0.07	d : 0.07	= : 0.07	" : 0.07	i : 0.07	f : 0.03	c : 0.03	$ : 0.03	
[ : 0.21	g : 0.10	c : 0.10	" : 0.10	! : 0.07	# : 0.07	e : 0.07	d : 0.07	f : 0.03	a : 0.03	= : 0.03	$ : 0.03	i : 0.03	
c : 0.14	d : 0.14	! : 0.10	g : 0.10	i : 0.07	# : 0.07	e : 0.07	a : 0.07	" : 0.07	b : 0.03	f : 0.03	= : 0.03	$ : 0.03	
! : 0.21	c : 0.14	g : 0.10	i : 0.07	b : 0.07	# : 0.07	" : 0.07	d : 0.07	f : 0.03	= : 0.03	[ : 0.03	e : 0.03	$ : 0.03	
c : 0.17	! : 0.17	b : 0.14	g : 0.07	i : 0.07	e : 0.07	" : 0.07	d : 0.07	^ : 0.03	[ : 0.03	f : 0.03	= : 0.03	
c : 0.17	b : 0.17	" : 0.14	d : 0.10	g : 0.07	i : 0.07	f : 0.07	! : 0.07	v : 0.03	^ : 0.03	e : 0.03	
c : 0.21	[ : 0.14	" : 0.10	g : 0.07	i : 0.07	e : 0.07	b : 0.07	f : 0.07	v : 0.03	^ : 0.03	! : 0.03	a : 0.03	d : 0.03	
d : 0.17	[ : 0.14	c : 0.14	e : 0.10	i : 0.07	! : 0.07	f : 0.07	" : 0.07	v : 0.03	^ : 0.03	b : 0.03	g : 0.03	
c : 0.21	d : 0.17	e : 0.10	b : 0.10	a : 0.07	i : 0.07	! : 0.07	v : 0.03	^ : 0.03	o : 0.03	f : 0.03	g : 0.03	
[ : 0.17	d : 0.17	b : 0.14	c : 0.14	o : 0.07	e : 0.07	i : 0.03	v : 0.03	^ : 0.03	f : 0.03	g : 0.03	l : 0.03	
d : 0.17	c : 0.14	o : 0.14	a : 0.10	b : 0.10	e : 0.07	i : 0.03	v : 0.03	^ : 0.03	n : 0.03	f : 0.03	g : 0.03	l : 0.03	
m : 0.46	o : 0.17	l : 0.07	n : 0.07	c : 0.03	v : 0.03	^ : 0.03	d : 0.03	b : 0.03	e : 0.03	
m : 0.49	o : 0.17	l : 0.07	n : 0.07	c : 0.03	v : 0.03	^ : 0.03	d : 0.03	i : 0.03	
m : 0.53	o : 0.17	n : 0.10	l : 0.07	v : 0.03	^ : 0.03	i : 0.03	
m : 0.53	o : 0.14	n : 0.10	a : 0.03	v : 0.03	^ : 0.03	f : 0.03	l : 0.03	i : 0.03	
c : 0.14	b : 0.14	o : 0.10	d : 0.10	n : 0.07	a : 0.07	m : 0.07	f : 0.07	] : 0.03	v : 0.03	^ : 0.03	g : 0.03	i : 0.03	e : 0.03	
b : 0.17	c : 0.17	d : 0.14	] : 0.07	f : 0.07	e : 0.07	a : 0.03	n : 0.03	o : 0.03	v : 0.03	^ : 0.03	m : 0.03	g : 0.03	i : 0.03	
c : 0.21	d : 0.21	] : 0.14	e : 0.10	i : 0.07	f : 0.07	n : 0.03	v : 0.03	^ : 0.03	b : 0.03	g : 0.03	
c : 0.24	d : 0.21	] : 0.14	e : 0.10	i : 0.07	f : 0.07	^ : 0.03	2 : 0.03	b : 0.03	g : 0.03	
c : 0.21	e : 0.14	b : 0.14	d : 0.14	] : 0.10	i : 0.07	f : 0.07	^ : 0.03	2 : 0.03	g : 0.03	
c : 0.24	b : 0.14	e : 0.10	d : 0.10	i : 0.07	4 : 0.07	^ : 0.03	3 : 0.03	f : 0.03	2 : 0.03	a : 0.03	g : 0.03	5 : 0.03	
2 : 0.28	3 : 0.14	] : 0.14	e : 0.07	c : 0.07	4 : 0.07	i : 0.03	^ : 0.03	b : 0.03	g : 0.03	d : 0.03	5 : 0.03	
2 : 0.28	3 : 0.14	b : 0.10	c : 0.07	4 : 0.07	d : 0.07	i : 0.03	^ : 0.03	] : 0.03	= : 0.03	a : 0.03	e : 0.03	5 : 0.03	
b : 0.17	3 : 0.14	a : 0.10	c : 0.07	] : 0.07	4 : 0.07	d : 0.07	e : 0.07	f : 0.03	i : 0.03	2 : 0.03	g : 0.03	= : 0.03	5 : 0.03	
] : 0.14	d : 0.14	c : 0.10	b : 0.10	e : 0.10	g : 0.10	i : 0.07	= : 0.07	f : 0.03	5 : 0.03	2 : 0.03	3 : 0.03	
g : 0.17	i : 0.14	c : 0.14	d : 0.14	e : 0.10	= : 0.10	f : 0.07	b : 0.03	2 : 0.03	3 : 0.03	
g : 0.35	c : 0.10	e : 0.10	i : 0.10	d : 0.10	= : 0.10	f : 0.07	3 : 0.03	
g : 0.35	e : 0.10	i : 0.10	= : 0.10	f : 0.07	] : 0.07	c : 0.07	d : 0.07	3 : 0.03	
g : 0.39	i : 0.10	= : 0.10	f : 0.07	c : 0.07	3 : 0.07	e : 0.07	] : 0.07	2 : 0.03	
g : 0.39	c : 0.10	i : 0.10	= : 0.10	3 : 0.07	e : 0.03	d : 0.03	a : 0.03	f : 0.03	> : 0.03	2 : 0.03	
g : 0.35	c : 0.10	i : 0.10	= : 0.10	3 : 0.07	e : 0.07	d : 0.03	2 : 0.03	] : 0.03	f : 0.03	> : 0.03	
g : 0.32	e : 0.10	i : 0.10	= : 0.10	c : 0.07	b : 0.07	] : 0.03	3 : 0.03	d : 0.03	2 : 0.03	: : 0.03	> : 0.03	
g : 0.24	e : 0.21	b : 0.17	i : 0.10	= : 0.07	c : 0.03	d : 0.03	] : 0.03	: : 0.03	> : 0.03	

#score	349.9742037632893
#seq	28
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_UTR_m1_run1.txt

#BEAR
d[dddd[ccc[ccc!!cccooooooccc333ccc22ccc]	chr11:62476937-62477241(-)$1	304	97	137	18.0618
""==========####cccmmmmccc4444==========	chr19:42751654-42751898(-)$1	244	142	182	14.8110
Fdddd"""eeeee[bbcccooooooccc]bb]eeeee]dd	chr21:45344757-45344991(+)$1	234	149	189	13.4308
ddiiiiiiiii!!ccc[a[ccclllccc]accciiiiiii	chr4:1949973-1950211(+)$1	238	188	228	13.8495
eeeccc[abb!!gggggggooooooggggggg333bb]a]	chr19:47778071-47778313(+)$1	242	129	169	14.8046
hhhh[ffffff!!cccrrrrrrrrrccc333ffffff]hh	chr12:133405019-133405317(-)$1	298	48	88	12.1035
iiiii"""ggggggg[ddddmmmmdddd333gggggggii	chr10:102760059-102760309(+)$1	250	89	129	14.4422
[cccggggggg$$$$$cccooooooccc333ggggggg22	chr7:5460900-5461142(-)$1	242	173	213	18.1692
d####ccc[ccc[bb[cccoooooocccbb]cccccc444	chr4:763352-763581(-)$1	229	16	56	15.9813
"""eeeee[ffffffddddoooooodddd333ffffff]e	chr2:242255461-242255706(+)$1	245	58	98	15.1524
eiiiiiiiiieeeee[cccooooooccceeeee22iiiii	chr19:40790508-40790813(-)$1	305	164	204	15.6405
ggggg[==========lll==========22ggggggg33	chr16:1413376-1413649(-)$1	273	65	105	12.3169
"""eeeee[ffffffddddoooooodddd333ffffff]e	chr2:242255510-242255783(+)$1	273	9	49	15.1524
!ccc"""a[ggggggg[cccnnnnnccc333ggggggga]	chr1:2326833-2327076(+)$1	243	44	84	15.6359
!!ccc!!ccc[a!!ccc[ddddllldddd22ccc22a]cc	chr16:50342178-50342532(+)$1	354	209	249	13.7245
[bb!!ccc[a!!ggggggg[aooooooa]ggggggg22a2	chr9:139729828-139730088(+)$1	260	190	230	14.3757
========[bb[ccc[cccooooooccc]ccc]bb]====	chr12:93964648-93964890(+)$1	242	119	159	17.1710
[ccceeeee!!dddd!!ccclllcccddddeeeee]ccce	chr12:76477545-76477805(-)$1	260	94	134	11.6822
ggggg::ffffff####cccooooooccc4444ffffff:	chr2:241496663-241496950(-)$1	287	246	286	11.9778
bbdddd[gggggggbbcccooooooccc]bb]ggggggg]	chr10:5726861-5727119(+)$1	258	134	174	15.1121
hhhh[ddddccc[bb[cccoooooocccbb]ccc333ddd	chr11:804969-805231(-)$1	262	31	71	15.2777
[ccc!!ccc[ccc[ccc"""bblllbb333ccc]cccccc	chr1:182360559-182360867(-)$1	308	39	79	13.2035
gggggg####ccc!!ddddoooooodddd4444ccc333g	chr12:112036753-112036991(-)$1	238	15	55	16.8860
eeeeedddd[ccc[ccccccnnnnnccc]ccc]cccdddd	chr7:50860281-50860543(-)$1	262	218	258	12.2577
!!ccc!!a[ccc[dddd!!aooooooa22dddd]ccc]a5	chr7:77166729-77166971(+)$1	242	81	121	13.9632
[a[dddd!!bbccc!!ccc[aooooooa]ccc]ccc4444	chr7:917714-917985(+)$1	271	92	132	14.7595
f[ccc!!eeeee####cccnnnnnccc4444eeeee22cc	chr19:5935626-5935906(-)$1	280	111	151	13.5323
ccc!!a!!a"""eeeee[bboooooobb]eeeee333a22	chr21:45224461-45224686(+)$1	225	127	167	14.0526
iiiiiiiii"""ffffff[ccclllccc22ffffff]iii	chr7:148580264-148580531(-)$1	267	218	258	13.3483
iibbccc!!bb####eeeeellleeeee333bb22ccc]b	chr9:94710898-94711138(-)$1	240	142	182	11.7451
[ggggggg&&&&&&&ddddoooooodddd22ggggggg]a	chr5:139030487-139030690(+)$1	203	106	146	12.7298
(bb!!ccc[ffffff[cccoooooocccffffff]ccc22	chr7:23570678-23571084(-)$1	406	73	113	14.5829
$$eeeee!!ccc####cccnnnnnccc4444ccc22eeee	chr12:112036485-112036706(-)$1	221	24	64	13.9656
cceeeeeeeeee[ccccccooooooccc22ccc]eeeee5	chr1:1189964-1190270(-)$1	306	142	182	15.2872
c[ggggggg[a!!ffffffooooooffffffaggggggg7	chr22:19949659-19949906(+)$1	247	98	138	14.4087
===[eeeee[dddd!!ddddmmmmdddd333dddd22eee	chr19:14529662-14529953(-)$1	291	26	66	12.1194
###ffffff"""ccc[ccc[ccclllccc]ccc22ccc33	chr1:36787719-36787984(+)$1	265	22	62	12.3697
:ccc####bb!!ccc[ddddoooooodddd]ccc]bb22c	chr9:138903201-138903464(-)$1	263	201	241	13.0729
gggggeeeee!!bb[ddddoooooodddd]bb333eeeee	chr17:62501910-62502186(-)$1	276	129	169	14.8739
eeee!!cccbb!!bb!!bboooooobb22bb]bb]ccc]e	chr10:126848945-126849195(-)$1	250	133	173	13.5856
iiiiiiii"""ccc!!ddddmmmmdddd333ccc333iii	chr1:1497982-1498215(-)$1	233	26	66	15.6581
bb"""eeeee!!iiiiiiiiillliiiiiiiiieeeee33	chr1:38396948-38397241(-)$1	293	117	157	12.3961
bb[ccc[a"""eeeeecccooooooccc]eeeee22a]cc	chr17:39942654-39942892(-)$1	238	28	68	15.3539
eeeeeeeeeea[affffffooooooffffff]a]a]eeee	chr18:3449267-3449522(+)$1	255	98	138	13.0207
[hhhhhhhh!!a[ffffffooooooffffff]a22hhhhh	chr1:15250644-15250898(+)$1	254	128	168	12.9431
gggggdddd[iiiiiiiiiooooooiiiiiiiii333ddd	chr15:93426432-93426750(+)$1	318	62	102	15.3888
ccc[a[ddddbb####ddddmmmmdddd4444bb]dddd]	chr12:109124792-109125094(-)$1	302	135	175	11.7691
cc[bb[bbggggggg!!cccnnnnnccc]ggggggg4444	chr1:36787827-36788081(+)$1	254	102	142	13.3150
ii"""eeeee[bb[a[aooooooa]abb333eeeeeiiii	chr9:140174675-140174952(+)$1	277	174	214	14.0262
eeeccc[ccc"""ccc!!ammmma22ccc22ccc]ccccc	chr8:144678429-144678689(-)$1	260	47	87	12.5296
g[eeeee[eeeee####bboooooobb22eeeeeeeeeeg	chr10:43892008-43892260(-)$1	252	19	59	13.2619
c[eeeeecccccc[bbcccooooooccc]bb]ccc88888	chr19:2270264-2270515(+)$1	251	179	219	13.4266
eee!!a[dddd"""dddd[ccclllccc22dddddddd]a	chr11:61584339-61584597(+)$1	258	44	84	11.5597
[eeeeeeeeeebb!!cccammmma]ccc333bb]eeeee3	chr1:21112816-21113092(-)$1	276	41	81	12.7507
[ccca[bb[bb[bb[ddddoooooodddd]bb]bb22bb]	chr22:50020574-50020845(-)$1	271	63	103	13.1881
ffffffccc!!ccc####cccmmmmccc333ccc]ccc22	chr3:49050195-49050462(+)$1	267	99	139	13.7615
=====[bb[a[bb[a[cccoooooocccabba]bb]====	chr1:182360309-182360581(-)$1	272	117	157	15.9113
hhhhhhhh"""ccc!!ddddmmmmdddd333ccc333hhh	chr1:1498139-1498392(-)$1	253	203	243	13.7706
cccc[ggggggg"""ddddoooooodddd22ggggggg]c	chr2:100106258-100106554(-)$1	296	209	249	16.7762
hhhhhhhh[cccgggggggooooooggggggg22ccc]hh	chr19:58991094-58991345(-)$1	251	22	62	13.8611
cciiiiiiiii[a[eeeeeooooooeeeeea]iiiiiiii	chr12:48212837-48213093(-)$1	256	75	115	15.1479

#otherMatches

#Seq PSSM
CGCCAUUUUAAGAGAAGCCCUGUACGGUAAACUCCGUGAC	chr11:62476937-62477241(-)$1	304	97	137	18.0618
AAUGUAUUCAAAACAAUAAAACUUUGGACCUUUGGAUGCA	chr19:42751654-42751898(-)$1	244	142	182	14.8110
CGACUUCUGGCUUGGCCUCUUUUGUGAGUGUGGGGCCUGG	chr21:45344757-45344991(+)$1	234	149	189	13.4308
CUGGAGUAAGGCUUGCUGUGGGACGCCCUCGUACUUUGCU	chr4:1949973-1950211(+)$1	238	188	228	13.8495
GGCGGCGCCGAGAGCCCCGGAGGCGCGGGGCUGAGCGAGG	chr19:47778071-47778313(+)$1	242	129	169	14.8046
AGCGUGGCGGGACGGCCCCGUUCCAGUCACCCCCGCCUCG	chr12:133405019-133405317(-)$1	298	48	88	12.1035
GCCGGCCUGGCUGGGCCUGGCUUUCCAGACUCCUGGCUCU	chr10:102760059-102760309(+)$1	250	89	129	14.4422
ACUCUGGGACUACGCCGAGGCCGAACUUUUAGGUCCCACU	chr7:5460900-5461142(-)$1	242	173	213	18.1692
GAAAAUGCGUCUGAUAGGCAAUUAAGCCAUGGGAGUGGAC	chr4:763352-763581(-)$1	229	16	56	15.9813
GGCGGUGUGGGGGAGGGGCGGCCGAGCCCAGGCUCUUCGG	chr2:242255461-242255706(+)$1	245	58	98	15.1524
CUUCCCCAACUGUGGCUGGGUUAUAUCACCACGGCGUUGG	chr19:40790508-40790813(-)$1	305	164	204	15.6405
GGCGUAGGAGCUGGCUGGCGGCCGGCUCUGCAUGUUCUUG	chr16:1413376-1413649(-)$1	273	65	105	12.3169
GGCGGUGUGGGGGAGGGGCGGCCGAGCCCAGGCUCUUCGG	chr2:242255510-242255783(+)$1	273	9	49	15.1524
GUGCCACGUGCCAUGGACCAGCCAGUGGACCCCAUGGCCA	chr1:2326833-2327076(+)$1	243	44	84	15.6359
UCCCUGGUGAGCUUGGCUGGGCUGAGCCCCUGCUCUGGUC	chr16:50342178-50342532(+)$1	354	209	249	13.7245
UCUGUGGUUCAAGUGGGGCCCAGCGCAGAGCUCCAUGAGU	chr9:139729828-139730088(+)$1	260	190	230	14.3757
GUCGGUCUGGGAAGUCGCGCGCACUCGCUGCUCCUGGGAC	chr12:93964648-93964890(+)$1	242	119	159	17.1710
UGGGCUUCAUGGCCACUGGCUGGGCCUGGUUGGAGACCCU	chr12:76477545-76477805(-)$1	260	94	134	11.6822
GCUGGCAGCCGCCAACGCCCGCUAGAGGGGAAGGGCGGCG	chr2:241496663-241496950(-)$1	287	246	286	11.9778
GCGCGGAGCCGGCGACUGGUGCUUCCCACGUGCGCCGGUG	chr10:5726861-5727119(+)$1	258	134	174	15.1121
UUGCGCGCCGCCUGCAGCGCAGGUAcgcgccggccugggc	chr11:804969-805231(-)$1	262	31	71	15.2777
CUGCUCGGCGACCAGGUAAGCCCCCGGACGGCCCGGUGUC	chr1:182360559-182360867(-)$1	308	39	79	13.2035
ggcgccccuccggccgcgccaacccgcgccuccccgcucg	chr12:112036753-112036991(-)$1	238	15	55	16.8860
AGCCGCCGCUGGGGCCUAACACCAAGUUGAGGGCUCGCGG	chr7:50860281-50860543(-)$1	262	218	258	12.2577
gggcgggcgggcggcgggggggccAGCGACCGCAGCCGGG	chr7:77166729-77166971(+)$1	242	81	121	13.9632
CGAGCAGAGCUGGCUAUGCUGGGUUAACUGCACGCCCCUC	chr7:917714-917985(+)$1	271	92	132	14.7595
CCUGUGACAGGGACCUCCAGAUUUUGGCUACCCCUGGAGC	chr19:5935626-5935906(-)$1	280	111	151	13.5323
UCCAGCGAGAGGCCAGGGCUUGGAGUGGGCCUGGGACCAG	chr21:45224461-45224686(+)$1	225	127	167	14.0526
UUUUGGAAAACUUGGUGAACGCCUAGUGAGUUGCCACUUU	chr7:148580264-148580531(-)$1	267	218	258	13.3483
AGGUGAGAAUCGGGACAGUCGCAGGCUGGGAGACGCUCUG	chr9:94710898-94711138(-)$1	240	142	182	11.7451
AUGGGAACAGCUGAAGGAGAUUGGCCUCCGAGUUCCCAGC	chr5:139030487-139030690(+)$1	203	106	146	12.7298
UCUGGCGACCCCGAGCAUCGUAGAGGGUCUCGGGAUCGAA	chr7:23570678-23571084(-)$1	406	73	113	14.5829
UCGCCGUCCUCGUCCUCGGUCUCCUCGUCCUCGGCCACGG	chr12:112036485-112036706(-)$1	221	24	64	13.9656
UCUGGCCUGGCCGUGUGGUGAUGAGGCUUAGCGGGGCCAG	chr1:1189964-1190270(-)$1	306	142	182	15.2872
GAUCCCUGGGCUGCCUGGGGAAGCACCCAGGGCCAGGGAG	chr22:19949659-19949906(+)$1	247	98	138	14.4087
GGCCGUUGGGCACCGGGGCGCAUGCGCUAGGGGUGGGCCA	chr19:14529662-14529953(-)$1	291	26	66	12.1194
AGGACUGGGGAAGGGAGCCUCUCAGGGGGUGGCGGUCCAC	chr1:36787719-36787984(+)$1	265	22	62	12.3697
CUACUGUUGCCUGAGAAAAAUGUGAUUUUUAUUCUGCUUG	chr9:138903201-138903464(-)$1	263	201	241	13.0729
GCGCCAUUUUGAUAUUCACGUCACAGUGAUUGGAAGAGAU	chr17:62501910-62502186(-)$1	276	129	169	14.8739
GGCGGCGGCCCGAGGAGCGAGGGACCGAACCGGGAGCCAU	chr10:126848945-126849195(-)$1	250	133	173	13.5856
GCCAUGUCCUUGUCCACCCUGUGUGGGGCACGGCUUCGAC	chr1:1497982-1498215(-)$1	233	26	66	15.6581
gaauccggaggcugggguuuuaguaaagcuccguuccgaa	chr1:38396948-38397241(-)$1	293	117	157	12.3961
cggcccggucaggcccCAUACUCAGGUGCGGGCUAUCGGG	chr17:39942654-39942892(-)$1	238	28	68	15.3539
GAGGCAGGCGCGCGCCCGGCCGUCCCCGGGCAGAGACGUU	chr18:3449267-3449522(+)$1	255	98	138	13.0207
GCGGCGGCGACCUCCGGGUCUGUGAGCCCGGCGCGCGCCG	chr1:15250644-15250898(+)$1	254	128	168	12.9431
AGGGGGCGGCGGGCCGGGCCUCGCCGCUCGGCUCUUCUCG	chr15:93426432-93426750(+)$1	318	62	102	15.3888
GGAGCGUGAAGCAGGGUCCCUGUGGGGAGGAGGCUUUCGA	chr12:109124792-109125094(-)$1	302	135	175	11.7691
GCCGUGGGGCUGGGCCCCAGCGUGCCUGUGCCCAGCAGGU	chr1:36787827-36788081(+)$1	254	102	142	13.3150
GCCACAGCCAACCAUGACAGUGCUGGGGCUCUGGCUGCCU	chr9:140174675-140174952(+)$1	277	174	214	14.0262
CUCGCAGGCAGUUGGUUACUUCCGGAGCCCGUGUGUGCCC	chr8:144678429-144678689(-)$1	260	47	87	12.5296
GAGCCCGCGCAGGCCCUGGGGCCGACCUUCCUGCCGGGCC	chr10:43892008-43892260(-)$1	252	19	59	13.2619
AUGGCCCGGGACGCGCCGGGCGAGGCCGCGCACGUAGACG	chr19:2270264-2270515(+)$1	251	179	219	13.4266
CGCAGCGCGCGUUCCCAUUGGCCGAGCCUCGUGGCGCGGG	chr11:61584339-61584597(+)$1	258	44	84	11.5597
AACUGUCACCGCGCCGAGCCCCAGCCUCAUCCGUCGGUGU	chr1:21112816-21113092(-)$1	276	41	81	12.7507
UGCCCUCCUGGUGGGAGGAACUCCCUCCUGUCUCCUUGGU	chr22:50020574-50020845(-)$1	271	63	103	13.1881
GGGCCCUGCGUGGUUAUGAGGAGCUCCUGUUGCUGGCAUC	chr3:49050195-49050462(+)$1	267	99	139	13.7615
GCGCUGUGGAUGGAGUGGCGGUGCGGUCCCCUGUGGAGCG	chr1:182360309-182360581(-)$1	272	117	157	15.9113
GCCAUGUCCUUGUCCACCCUGUGUGGGGCACGGCUUCGAC	chr1:1498139-1498392(-)$1	253	203	243	13.7706
GGCCGGGGUCCGCAAGGCCGGAGAAGGCCGCCGGGCCCGG	chr2:100106258-100106554(-)$1	296	209	249	16.7762
GUGCCUCUGGCUGGUGGGGCGGUAACCCUGCCCGGGUGGG	chr19:58991094-58991345(-)$1	251	22	62	13.8611
UCAGAUCCUUCGGCGGGGAAAGAGGUCCCUUGGAGGGGUC	chr12:48212837-48213093(-)$1	256	75	115	15.1479

#DB
(.((((.(((.(((..(((......)))...)))..))).	chr11:62476937-62477241(-)$1	1	97	137	18.0618
..((((((((((....(((....)))....))))))))))	chr19:42751654-42751898(-)$1	1	142	182	14.8110
(((((...(((((.(((((......))).)).))))).))	chr21:45344757-45344991(+)$1	1	149	189	13.4308
))(((((((((..(((.(.(((...))).)))))))))))	chr4:1949973-1950211(+)$1	1	188	228	13.8495
)))(((.(((..(((((((......)))))))...)).).	chr19:47778071-47778313(+)$1	1	129	169	14.8046
((((.((((((..(((.........)))...)))))).))	chr12:133405019-133405317(-)$1	1	48	88	12.1035
(((((...(((((((.((((....))))...)))))))))	chr10:102760059-102760309(+)$1	1	89	129	14.4422
.((((((((((.....(((......)))...)))))))..	chr7:5460900-5461142(-)$1	1	173	213	18.1692
(....(((.(((.((.(((......))))).))))))...	chr4:763352-763581(-)$1	1	16	56	15.9813
...(((((.((((((((((......))))...)))))).)	chr2:242255461-242255706(+)$1	1	58	98	15.1524
)((((((((((((((.(((......))))))))..)))))	chr19:40790508-40790813(-)$1	1	164	204	15.6405
(((((.((((((((((...))))))))))..)))))))..	chr16:1413376-1413649(-)$1	1	65	105	12.3169
...(((((.((((((((((......))))...)))))).)	chr2:242255510-242255783(+)$1	1	9	49	15.1524
.(((...(.(((((((.(((.....)))...)))))))).	chr1:2326833-2327076(+)$1	1	44	84	15.6359
..(((..(((.(..(((.((((...))))..)))..).))	chr16:50342178-50342532(+)$1	1	209	249	13.7245
.((..(((.(..(((((((.(......).)))))))..).	chr9:139729828-139730088(+)$1	1	190	230	14.3757
((((((((.((.(((.(((......))).))).)).))))	chr12:93964648-93964890(+)$1	1	119	159	17.1710
.((((((((..((((..(((...)))))))))))).))))	chr12:76477545-76477805(-)$1	1	94	134	11.6822
)))))..((((((....(((......)))....)))))).	chr2:241496663-241496950(-)$1	1	246	286	11.9778
))((((.((((((((((((......))).)).))))))).	chr10:5726861-5727119(+)$1	1	134	174	15.1121
((((.(((((((.((.(((......))))).)))...)))	chr11:804969-805231(-)$1	1	31	71	15.2777
.(((..(((.(((.(((...((...))...))).))))))	chr1:182360559-182360867(-)$1	1	39	79	13.2035
((((((....(((..((((......))))....)))...)	chr12:112036753-112036991(-)$1	1	15	55	16.8860
)))))((((.(((.((((((.....))).))).)))))))	chr7:50860281-50860543(-)$1	1	218	258	12.2577
..(((..(.(((.((((..(......)..)))).))).).	chr7:77166729-77166971(+)$1	1	81	121	13.9632
.(.((((..(((((..(((.(......).))).)))....	chr7:917714-917985(+)$1	1	92	132	14.7595
(.(((..(((((....(((.....)))....)))))..))	chr19:5935626-5935906(-)$1	1	111	151	13.5323
(((..(..(...(((((.((......)).)))))...)..	chr21:45224461-45224686(+)$1	1	127	167	14.0526
(((((((((...((((((.(((...)))..)))))).)))	chr7:148580264-148580531(-)$1	1	218	258	13.3483
(((((((..((....(((((...)))))...))..))).)	chr9:94710898-94711138(-)$1	1	142	182	11.7451
.(((((((.......((((......))))..))))))).)	chr5:139030487-139030690(+)$1	1	106	146	12.7298
.((..(((.((((((.(((......))))))))).)))..	chr7:23570678-23571084(-)$1	1	73	113	14.5829
..(((((..(((....(((.....)))....)))..))))	chr12:112036485-112036706(-)$1	1	24	64	13.9656
((((((((((((.((((((......)))..))).))))).	chr1:1189964-1190270(-)$1	1	142	182	15.2872
(.(((((((.(..((((((......)))))))))))))).	chr22:19949659-19949906(+)$1	1	98	138	14.4087
(((.(((((.((((..((((....))))...))))..)))	chr19:14529662-14529953(-)$1	1	26	66	12.1194
...((((((...(((.(((.(((...))).)))..)))..	chr1:36787719-36787984(+)$1	1	22	62	12.3697
.(((....((..(((.((((......)))).))).))..)	chr9:138903201-138903464(-)$1	1	201	241	13.0729
((((((((((..((.((((......)))).))...)))))	chr17:62501910-62502186(-)$1	1	129	169	14.8739
((((..(((((..((..((......))..)).)).))).)	chr10:126848945-126849195(-)$1	1	133	173	13.5856
((((((((...(((..((((....))))...)))...)))	chr1:1497982-1498215(-)$1	1	26	66	15.6581
((...(((((..(((((((((...))))))))))))))..	chr1:38396948-38397241(-)$1	1	117	157	12.3961
((.(((.(...((((((((......))).)))))..).))	chr17:39942654-39942892(-)$1	1	28	68	15.3539
)))))((((((.(((((((......)))))).).).))))	chr18:3449267-3449522(+)$1	1	98	138	13.0207
.((((((((..(.((((((......)))))).)..)))))	chr1:15250644-15250898(+)$1	1	128	168	12.9431
(((((((((.(((((((((......)))))))))...)))	chr15:93426432-93426750(+)$1	1	62	102	15.3888
(((.(.((((((....((((....))))....)).)))).	chr12:109124792-109125094(-)$1	1	135	175	11.7691
((.((.(((((((((..(((.....))).)))))))....	chr1:36787827-36788081(+)$1	1	102	142	13.3150
((...(((((.((.(.(......).)))...)))))))))	chr9:140174675-140174952(+)$1	1	174	214	14.0262
)))(((.(((...(((..(....)..)))..))).)))((	chr8:144678429-144678689(-)$1	1	47	87	12.5296
(.(((((.(((((....((......))..)))))))))))	chr10:43892008-43892260(-)$1	1	19	59	13.2619
(.(((((((((((.(((((......))).)).))).....	chr19:2270264-2270515(+)$1	1	179	219	13.4266
(((..(.((((...((((.(((...)))..)))))))).)	chr11:61584339-61584597(+)$1	1	44	84	11.5597
.((((((((((((..((((....).)))...)).))))).	chr1:21112816-21113092(-)$1	1	41	81	12.7507
.((((.((.((.((.((((......)))).)).))..)).	chr22:50020574-50020845(-)$1	1	63	103	13.1881
(((((((((..(((....(((....)))...))).)))..	chr3:49050195-49050462(+)$1	1	99	139	13.7615
(((((.((.(.((.(.(((......))))))).)).))))	chr1:182360309-182360581(-)$1	1	117	157	15.9113
((((((((...(((..((((....))))...)))...)))	chr1:1498139-1498392(-)$1	1	203	243	13.7706
)(((.(((((((...((((......))))..))))))).)	chr2:100106258-100106554(-)$1	1	209	249	16.7762
((((((((.((((((((((......)))))))..))).))	chr19:58991094-58991345(-)$1	1	22	62	13.8611
))(((((((((.(.(((((......)))))).))))))))	chr12:48212837-48213093(-)$1	1	75	115	15.1479

#PSSM
[ : 0.14	c : 0.13	e : 0.11	g : 0.09	i : 0.08	h : 0.06	d : 0.04	" : 0.04	! : 0.04	= : 0.04	b : 0.04	f : 0.03	F : 0.01	( : 0.01	$ : 0.01	# : 0.01	: : 0.01	
c : 0.19	e : 0.11	i : 0.09	g : 0.09	[ : 0.08	h : 0.08	b : 0.08	" : 0.04	= : 0.04	d : 0.03	# : 0.03	! : 0.03	a : 0.01	$ : 0.01	f : 0.01	
c : 0.19	e : 0.18	g : 0.11	i : 0.09	h : 0.08	= : 0.06	" : 0.06	d : 0.04	b : 0.04	[ : 0.04	# : 0.03	f : 0.01	
c : 0.21	e : 0.16	g : 0.11	i : 0.09	h : 0.08	d : 0.06	! : 0.06	= : 0.04	b : 0.03	[ : 0.03	f : 0.03	" : 0.03	# : 0.01	
e : 0.18	g : 0.13	c : 0.11	i : 0.09	! : 0.09	d : 0.06	= : 0.04	[ : 0.04	" : 0.04	h : 0.04	# : 0.03	f : 0.03	a : 0.03	b : 0.01	
e : 0.21	c : 0.11	d : 0.09	i : 0.08	g : 0.08	[ : 0.08	! : 0.08	" : 0.04	f : 0.04	h : 0.04	= : 0.03	a : 0.03	: : 0.01	# : 0.01	
e : 0.21	c : 0.11	[ : 0.09	i : 0.08	d : 0.08	g : 0.06	! : 0.06	= : 0.04	" : 0.04	h : 0.04	b : 0.04	f : 0.03	# : 0.03	: : 0.01	
e : 0.18	c : 0.16	i : 0.08	g : 0.08	d : 0.08	a : 0.06	! : 0.06	= : 0.04	f : 0.04	h : 0.04	b : 0.04	" : 0.03	# : 0.03	[ : 0.01	
e : 0.18	[ : 0.18	c : 0.11	g : 0.09	d : 0.08	i : 0.06	f : 0.04	! : 0.04	" : 0.04	= : 0.03	b : 0.03	# : 0.01	a : 0.01	& : 0.01	h : 0.01	
c : 0.14	e : 0.14	b : 0.11	g : 0.09	" : 0.09	f : 0.08	[ : 0.08	i : 0.04	! : 0.04	= : 0.03	a : 0.03	d : 0.03	# : 0.01	& : 0.01	
c : 0.14	! : 0.13	" : 0.11	e : 0.09	g : 0.09	b : 0.09	f : 0.08	[ : 0.06	i : 0.04	= : 0.03	a : 0.03	d : 0.03	& : 0.01	
c : 0.22	! : 0.14	e : 0.09	g : 0.08	" : 0.08	f : 0.06	[ : 0.06	b : 0.06	= : 0.03	a : 0.03	d : 0.03	$ : 0.01	# : 0.01	& : 0.01	i : 0.01	
c : 0.19	g : 0.11	# : 0.08	e : 0.08	! : 0.08	[ : 0.08	f : 0.08	b : 0.08	" : 0.04	d : 0.03	i : 0.03	a : 0.03	$ : 0.01	= : 0.01	& : 0.01	
c : 0.19	# : 0.11	[ : 0.11	g : 0.11	f : 0.11	b : 0.08	e : 0.04	! : 0.04	d : 0.04	i : 0.03	" : 0.03	$ : 0.01	= : 0.01	& : 0.01	
c : 0.16	# : 0.13	! : 0.11	f : 0.11	b : 0.09	g : 0.09	e : 0.06	d : 0.04	[ : 0.03	i : 0.03	a : 0.03	$ : 0.01	= : 0.01	& : 0.01	" : 0.01	
[ : 0.16	d : 0.14	! : 0.13	c : 0.13	# : 0.11	g : 0.06	e : 0.06	f : 0.06	b : 0.04	i : 0.03	$ : 0.01	= : 0.01	
c : 0.36	d : 0.24	! : 0.06	f : 0.06	g : 0.04	# : 0.04	e : 0.04	[ : 0.03	i : 0.03	r : 0.01	l : 0.01	a : 0.01	
c : 0.39	d : 0.22	f : 0.06	g : 0.04	[ : 0.03	! : 0.03	e : 0.03	b : 0.03	i : 0.03	a : 0.01	r : 0.01	l : 0.01	" : 0.01	o : 0.01	# : 0.01	
c : 0.39	d : 0.22	[ : 0.04	g : 0.04	b : 0.04	f : 0.04	e : 0.03	i : 0.03	a : 0.03	r : 0.01	l : 0.01	" : 0.01	! : 0.01	o : 0.01	
o : 0.49	c : 0.14	d : 0.11	m : 0.04	[ : 0.04	n : 0.03	r : 0.01	= : 0.01	" : 0.01	a : 0.01	b : 0.01	e : 0.01	i : 0.01	
o : 0.55	m : 0.13	c : 0.08	n : 0.08	a : 0.03	l : 0.03	r : 0.01	= : 0.01	d : 0.01	b : 0.01	i : 0.01	
o : 0.59	m : 0.14	n : 0.08	c : 0.06	l : 0.04	r : 0.01	= : 0.01	d : 0.01	b : 0.01	
o : 0.59	m : 0.14	l : 0.13	n : 0.08	r : 0.01	= : 0.01	c : 0.01	
o : 0.57	l : 0.11	m : 0.09	n : 0.08	a : 0.04	c : 0.03	r : 0.01	= : 0.01	e : 0.01	
o : 0.57	l : 0.09	d : 0.08	c : 0.06	n : 0.04	] : 0.03	r : 0.01	= : 0.01	e : 0.01	i : 0.01	2 : 0.01	m : 0.01	
c : 0.42	d : 0.21	o : 0.09	b : 0.04	f : 0.04	g : 0.03	e : 0.03	i : 0.03	= : 0.01	l : 0.01	a : 0.01	2 : 0.01	
c : 0.44	d : 0.24	b : 0.08	f : 0.04	g : 0.03	o : 0.03	e : 0.03	i : 0.03	4 : 0.01	= : 0.01	a : 0.01	
c : 0.40	d : 0.24	4 : 0.04	2 : 0.04	f : 0.04	g : 0.03	a : 0.03	b : 0.03	e : 0.03	i : 0.03	= : 0.01	3 : 0.01	
3 : 0.21	] : 0.18	d : 0.16	2 : 0.09	4 : 0.06	f : 0.06	c : 0.04	g : 0.03	b : 0.03	e : 0.03	i : 0.03	= : 0.01	a : 0.01	
3 : 0.24	2 : 0.13	b : 0.11	4 : 0.09	e : 0.08	g : 0.06	f : 0.06	c : 0.04	d : 0.04	] : 0.04	i : 0.03	a : 0.01	
3 : 0.22	b : 0.11	c : 0.11	e : 0.08	2 : 0.08	4 : 0.08	f : 0.08	g : 0.06	] : 0.04	d : 0.03	i : 0.03	= : 0.01	a : 0.01	
c : 0.27	g : 0.16	] : 0.11	e : 0.11	b : 0.06	f : 0.04	4 : 0.04	d : 0.04	3 : 0.03	a : 0.03	i : 0.03	= : 0.01	
c : 0.24	g : 0.16	e : 0.13	f : 0.08	] : 0.08	b : 0.06	d : 0.04	i : 0.04	3 : 0.03	4 : 0.03	a : 0.03	= : 0.01	2 : 0.01	
c : 0.22	g : 0.16	e : 0.13	f : 0.09	2 : 0.08	b : 0.08	] : 0.08	i : 0.04	3 : 0.03	d : 0.03	= : 0.01	
g : 0.16	2 : 0.13	e : 0.13	c : 0.13	3 : 0.11	] : 0.09	f : 0.08	b : 0.04	i : 0.03	d : 0.03	= : 0.01	a : 0.01	
c : 0.21	g : 0.16	e : 0.13	2 : 0.09	f : 0.08	3 : 0.08	] : 0.06	i : 0.04	b : 0.03	d : 0.03	= : 0.01	h : 0.01	8 : 0.01	
c : 0.19	e : 0.13	g : 0.13	3 : 0.09	i : 0.06	f : 0.06	2 : 0.06	= : 0.04	d : 0.04	b : 0.03	a : 0.03	4 : 0.03	] : 0.01	h : 0.01	8 : 0.01	
c : 0.14	g : 0.13	e : 0.13	] : 0.11	i : 0.09	d : 0.08	= : 0.04	4 : 0.04	f : 0.04	2 : 0.04	h : 0.03	3 : 0.01	a : 0.01	8 : 0.01	b : 0.01	
c : 0.11	i : 0.11	] : 0.11	e : 0.11	d : 0.08	2 : 0.08	a : 0.06	h : 0.06	3 : 0.06	= : 0.04	4 : 0.04	g : 0.03	f : 0.01	8 : 0.01	b : 0.01	
e : 0.13	i : 0.11	c : 0.11	] : 0.09	2 : 0.08	d : 0.06	h : 0.06	3 : 0.06	= : 0.04	4 : 0.04	g : 0.03	5 : 0.03	a : 0.03	: : 0.01	b : 0.01	7 : 0.01	8 : 0.01	

#score	859.4362708525105
#seq	61
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_CDS_m3_run2.txt

#BEAR
##dddduuuuuuuuuuuudddd333	chr5:179135199-179135438(+)$1	239	113	138	22.3487
:ffffffuuuuuuuuuuuuffffff	chrX:71493550-71493770(-)$1	220	139	164	22.1785
ddd[ccctttttttttttcccdddd	chr1:45481019-45481282(+)$1	263	16	41	23.0312
gggggguuuuuuuuuuuuggggggg	chr15:85230879-85231105(-)$1	226	43	68	23.9644
addddvvvvvvvvvvvvvdddd]a]	chr17:80037290-80037524(-)$1	234	153	178	21.8686
!ddddyyyyyyyyyyyyyyyydddd	chr7:127569255-127569475(+)$1	220	179	204	19.6139
"fffffftttttttttttffffff3	chr18:43667984-43668270(-)$1	286	13	38	23.6709
gggggguuuuuuuuuuuuggggggg	chr12:54676525-54676758(+)$1	233	144	169	23.9644
b!!bbvvvvvvvvvvvvvbb22bb]	chr3:40499343-40499582(+)$1	239	149	174	20.5222
eeee[bbuuuuuuuuuuuubb22ee	chr2:176042900-176043158(-)$1	258	111	136	22.0552
ccdddduuuuuuuuuuuudddd]cc	chr5:145551380-145551653(-)$1	273	116	141	22.4345
eee[awwwwwwwwwwwwwwa]eeee	chr11:57509574-57509821(+)$1	247	82	107	21.2033
ggggggwwwwwwwwwwwwwwggggg	chr18:43669688-43669907(-)$1	219	23	48	22.6487
======vvvvvvvvvvvvv======	chr21:47931247-47931552(+)$1	305	11	36	23.9815
==!!ccctttttttttttccc4444	chr16:20781203-20781463(+)$1	260	201	226	23.7391
gggggggtttttttttttggggggg	chr21:35284543-35284804(-)$1	261	149	174	24.6479
cc[ddddtttttttttttdddd]cc	chr6:133138077-133138297(+)$1	220	157	182	23.2167
hhhh[bbtttttttttttbbhhhhh	chr7:128497136-128497373(+)$1	237	148	173	22.2472
""eeeeevvvvvvvvvvvvveeeee	chr16:31202245-31202483(+)$1	238	189	214	22.9037
gggggggtttttttttttggggggg	chrX:153880292-153880550(-)$1	258	19	44	24.6479
!ffffffuuuuuuuuuuuuffffff	chr12:49666902-49667156(+)$1	254	215	240	23.3281
gggggggtttttttttttggggggg	chr12:120635140-120635366(-)$1	226	19	44	24.6479
[ccc[bbtttttttttttbb]ccce	chr2:26413942-26414226(-)$1	284	252	277	23.3316
g:eeeeeuuuuuuuuuuuueeeee:	chr19:39125555-39125806(+)$1	251	135	160	21.1514
hhhhhhhttttttttttthhhhhhh	chr16:88804536-88804790(-)$1	254	4	29	21.8603
gggggggtttttttttttggggggg	chr1:24019073-24019348(+)$1	275	3	28	24.6479
iiiiiiitttttttttttiiiiiii	chr1:235276982-235277217(-)$1	235	109	134	24.2748
ffff[bbuuuuuuuuuuuubbffff	chrX:48433454-48433685(+)$1	231	190	215	22.5321
[eeeeewwwwwwwwwwwwwweeeee	chr2:55461870-55462080(+)$1	210	136	161	21.6527
ggggggwwwwwwwwwwwwwwggggg	chr16:85840243-85840470(+)$1	227	64	89	22.6487
[ddddvvvvvvvvvvvvvddddfff	chr2:55460398-55460613(+)$1	215	25	50	21.9179
:ddddbbtttttttttttbb]dddd	chr21:35275688-35275940(-)$1	252	149	174	21.3344
[fffffftttttttttttffffffb	chr5:10402562-10402818(+)$1	256	61	86	23.5064
ffffffftttttttttttffffff2	chr1:109968837-109969138(-)$1	301	64	89	23.2740
effffffuuuuuuuuuuuuffffff	chr6:75950790-75951021(-)$1	231	203	228	23.0228
bb[ddddtttttttttttdddd]bb	chr12:125396257-125396495(-)$1	238	167	192	22.2187
gggggguuuuuuuuuuuuggggggg	chr12:56553309-56553586(+)$1	277	207	232	23.9644
e"""ccctttttttttttccc]eee	chr3:101405293-101405501(-)$1	208	75	100	23.5118
gggggggtttttttttttggggggg	chr7:10973153-10973420(-)$1	267	25	50	24.6479
!ffffffwwwwwwwwwwwwwwffff	chr2:162267732-162267996(+)$1	264	227	252	21.2528
cc[ddddtttttttttttdddd333	chr1:23405968-23406236(+)$1	268	214	239	23.1649
hhhhhhhvvvvvvvvvvvvvhhhhh	chr11:77336661-77336926(-)$1	265	104	129	21.6541
:fffffftttttttttttffffff:	chr10:71962797-71963041(-)$1	244	162	187	21.6771
gggggggtttttttttttggggggg	chr8:99057070-99057306(-)$1	236	0	25	24.6479
[eeeeeuuuuuuuuuuuueeeeedd	chrX:71495293-71495496(-)$1	203	100	125	22.5840
ggggcccvvvvvvvvvvvvvccc::	chr12:57037527-57037763(-)$1	236	208	233	21.5438
FFeeeeevvvvvvvvvvvvveeeee	chr6:33243740-33243943(+)$1	203	144	169	22.0752
hccc[bbwwwwwwwwwwwwwwbbcc	chr1:19439076-19439348(-)$1	272	121	146	20.2701
fffddddvvvvvvvvvvvvvdddd:	chr2:198358038-198358287(-)$1	249	49	74	21.2483
=======uuuuuuuuuuuu======	chr18:47016820-47017022(-)$1	202	68	93	24.0983
hhhhhhhttttttttttthhhhhhh	chr4:109543072-109543279(+)$1	207	85	110	21.8603
gggggggtttttttttttggggggg	chr8:99057138-99057375(-)$1	237	69	94	24.6479
a[eeeeettttttttttteeeee]a	chr8:82627121-82627352(-)$1	231	88	113	23.4405
!fffffftttttttttttffffff]	chr2:70131355-70131662(+)$1	307	45	70	23.8213
=======uuuuuuuuuuuu======	chr18:47016789-47017020(-)$1	231	66	91	24.0983
c"""ccctttttttttttccc333c	chr7:10978332-10978608(-)$1	276	91	116	23.6316
!!eeeeevvvvvvvvvvvvveeeee	chr1:19497153-19497390(-)$1	237	39	64	23.1226

#otherMatches

#Seq PSSM
CAAGCAUCAUGCCAUCUCUGCUAAA	chr5:179135199-179135438(+)$1	239	113	138	22.3487
CCUGGGCACCCUCUUUAAGGCCUAG	chrX:71493550-71493770(-)$1	220	139	164	22.1785
AUGCUGGAUGACUUUGGACCACAUC	chr1:45481019-45481282(+)$1	263	16	41	23.0312
AAAGUACAUUUAAUCUCAUACUUUC	chr15:85230879-85231105(-)$1	226	43	68	23.9644
CCGGUCCUUCUACUACAAGCUGCGU	chr17:80037290-80037524(-)$1	234	153	178	21.8686
CCACAUACCCUCCUUUCCCCCUGUG	chr7:127569255-127569475(+)$1	220	179	204	19.6139
UAGGAAGAUUUAUAUUUACUUUCUC	chr18:43667984-43668270(-)$1	286	13	38	23.6709
AGGAAUAAGUAGAGAAAAAUUCCUG	chr12:54676525-54676758(+)$1	233	144	169	23.9644
CAACUUUUUACUAAACAUGGCAGUG	chr3:40499343-40499582(+)$1	239	149	174	20.5222
UGGUUGCUUUCUUGAUUUUGUUUGC	chr2:176042900-176043158(-)$1	258	111	136	22.0552
AGCGAUUGAAAGGAAAAUGUUGUCU	chr5:145551380-145551653(-)$1	273	116	141	22.4345
GUGGUGGAAGAGUUGAAGAAGUACC	chr11:57509574-57509821(+)$1	247	82	107	21.2033
AUAGUGAAGAGGACAGGAGCCAUUG	chr18:43669688-43669907(-)$1	219	23	48	22.6487
GAAUGCUUAAAAACAGAAUGUGUUC	chr21:47931247-47931552(+)$1	305	11	36	23.9815
CAGCGCCUAGCAAUUUUUGGUUCUG	chr16:20781203-20781463(+)$1	260	201	226	23.7391
UAUUCUGCUGCAUCAAAACAGAAUA	chr21:35284543-35284804(-)$1	261	149	174	24.6479
GCUGGGUAAUCAUAUAAAACCUUGU	chr6:133138077-133138297(+)$1	220	157	182	23.2167
CAUGUGGUCACUUAUACUCCCAUGG	chr7:128497136-128497373(+)$1	237	148	173	22.2472
AGACUUUAAAUCAGAAUAAAAAAGU	chr16:31202245-31202483(+)$1	238	189	214	22.9037
GCUGCAGACCACCGCCAACUGCAGC	chrX:153880292-153880550(-)$1	258	19	44	24.6479
UGUCGAGCUGACUUAAAUACUUGAU	chr12:49666902-49667156(+)$1	254	215	240	23.3281
UAAGGGUUCUCUUUAUUCACCCUUA	chr12:120635140-120635366(-)$1	226	19	44	24.6479
GCCAAGACCAUCUCUCCCUCCUGGU	chr2:26413942-26414226(-)$1	284	252	277	23.3316
GAUCUUCAUCUGUAGCCAAGAAGAG	chr19:39125555-39125806(+)$1	251	135	160	21.1514
UGGUGGGCCUGCCACUUUCCCAUCA	chr16:88804536-88804790(-)$1	254	4	29	21.8603
CUGCUGCUCUUCCCUGUUGCAGCAG	chr1:24019073-24019348(+)$1	275	3	28	24.6479
UGACUAAGCUCCCAACAAUUAGUCA	chr1:235276982-235277217(-)$1	235	109	134	24.2748
UCAGCAGUUUCGGACCUAUCUCUGA	chrX:48433454-48433685(+)$1	231	190	215	22.5321
CUAAGAAAAGGAAGAAGAAGUCUUA	chr2:55461870-55462080(+)$1	210	136	161	21.6527
AGAUAGUCUUGCCCCAUAACCUGUC	chr16:85840243-85840470(+)$1	227	64	89	22.6487
UAAUUGUCAAACUAAAUGAGUUCUG	chr2:55460398-55460613(+)$1	215	25	50	21.9179
UUGGAGCAACAAUAAAAAGCUUCCA	chr21:35275688-35275940(-)$1	252	149	174	21.3344
UGACCUUUAUUUUCACUUAAGGUCU	chr5:10402562-10402818(+)$1	256	61	86	23.5064
GCGCAGUUGGUCCUUAGUACUGCGG	chr1:109968837-109969138(-)$1	301	64	89	23.2740
GUAUGUGUAUAAAUUAGAUCAUAUG	chr6:75950790-75951021(-)$1	231	203	228	23.0228
CUGUCUGACUACAACAUCCAGAAAG	chr12:125396257-125396495(-)$1	238	167	192	22.2187
GAGGGGCCUAAAGAACAACUCCUCA	chr12:56553309-56553586(+)$1	277	207	232	23.9644
GAUGGACUUUCACUUUUUGUUGCAG	chr3:101405293-101405501(-)$1	208	75	100	23.5118
UACAAAGAAUUCUAAAACCUUUGUA	chr7:10973153-10973420(-)$1	267	25	50	24.6479
UGUUCCUAAUGCUCAAAAUCAAGGG	chr2:162267732-162267996(+)$1	264	227	252	21.2528
CUUUUCCAUAUCCUUACAGGAAUAU	chr1:23405968-23406236(+)$1	268	214	239	23.1649
AGUGAUGAUGAUGUUGAACCUAUUA	chr11:77336661-77336926(-)$1	265	104	129	21.6541
CUACAUCGUGUUCAUCUGGAUGUAU	chr10:71962797-71963041(-)$1	244	162	187	21.6771
UGGAGUCGAUCAACUCUAGGCUCCA	chr8:99057070-99057306(-)$1	236	0	25	24.6479
UGGGUAAGAAGUUUUAAAUACUCUG	chrX:71495293-71495496(-)$1	203	100	125	22.5840
GAGUGGAUAUUGACAUCUAUUCCUC	chr12:57037527-57037763(-)$1	236	208	233	21.5438
GGUCCUAACAGAAUUGGGCAUAGGA	chr6:33243740-33243943(+)$1	203	144	169	22.0752
UGGCCACACAUCCUCCACCAAGUGC	chr1:19439076-19439348(-)$1	272	121	146	20.2701
GAAAUCUUCAUUAUUUUUACAGGUC	chr2:198358038-198358287(-)$1	249	49	74	21.2483
GAAAAUGACUCAUCAUCUCCAUUUU	chr18:47016820-47017022(-)$1	202	68	93	24.0983
ACAGCCUCUAACAAAACUAGGCUGU	chr4:109543072-109543279(+)$1	207	85	110	21.8603
UGGAGUCGAUCAACUCUAGGCUCCA	chr8:99057138-99057375(-)$1	237	69	94	24.6479
UGGCAGUUAUAUGUCCUUAUUGUGA	chr8:82627121-82627352(-)$1	231	88	113	23.4405
AAAAGGUGGAUUCAACAGACCUUUG	chr2:70131355-70131662(+)$1	307	45	70	23.8213
GAAAAUGACUCAUCAUCUCCAUUUU	chr18:47016789-47017020(-)$1	231	66	91	24.0983
CCCCUCUUUGUAUUUAUUGGAACUG	chr7:10978332-10978608(-)$1	276	91	116	23.6316
AAGAGGGAACAACUGAGAAACCUUC	chr1:19497153-19497390(-)$1	237	39	64	23.1226

#DB
..((((............))))...	chr5:179135199-179135438(+)$1	1	113	138	22.3487
.((((((............))))))	chrX:71493550-71493770(-)$1	1	139	164	22.1785
(((.(((...........)))))))	chr1:45481019-45481282(+)$1	1	16	41	23.0312
((((((............)))))))	chr15:85230879-85231105(-)$1	1	43	68	23.9644
(((((.............)))).).	chr17:80037290-80037524(-)$1	1	153	178	21.8686
.((((................))))	chr7:127569255-127569475(+)$1	1	179	204	19.6139
.((((((...........)))))).	chr18:43667984-43668270(-)$1	1	13	38	23.6709
((((((............)))))))	chr12:54676525-54676758(+)$1	1	144	169	23.9644
(..((.............))..)).	chr3:40499343-40499582(+)$1	1	149	174	20.5222
((((.((............))..))	chr2:176042900-176043158(-)$1	1	111	136	22.0552
((((((............)))).))	chr5:145551380-145551653(-)$1	1	116	141	22.4345
(((.(..............).))))	chr11:57509574-57509821(+)$1	1	82	107	21.2033
((((((..............)))))	chr18:43669688-43669907(-)$1	1	23	48	22.6487
((((((.............))))))	chr21:47931247-47931552(+)$1	1	11	36	23.9815
((..(((...........)))....	chr16:20781203-20781463(+)$1	1	201	226	23.7391
(((((((...........)))))))	chr21:35284543-35284804(-)$1	1	149	174	24.6479
((.((((...........)))).))	chr6:133138077-133138297(+)$1	1	157	182	23.2167
((((.((...........)))))))	chr7:128497136-128497373(+)$1	1	148	173	22.2472
..(((((.............)))))	chr16:31202245-31202483(+)$1	1	189	214	22.9037
(((((((...........)))))))	chrX:153880292-153880550(-)$1	1	19	44	24.6479
.((((((............))))))	chr12:49666902-49667156(+)$1	1	215	240	23.3281
(((((((...........)))))))	chr12:120635140-120635366(-)$1	1	19	44	24.6479
.(((.((...........)).))))	chr2:26413942-26414226(-)$1	1	252	277	23.3316
).(((((............))))).	chr19:39125555-39125806(+)$1	1	135	160	21.1514
(((((((...........)))))))	chr16:88804536-88804790(-)$1	1	4	29	21.8603
(((((((...........)))))))	chr1:24019073-24019348(+)$1	1	3	28	24.6479
(((((((...........)))))))	chr1:235276982-235277217(-)$1	1	109	134	24.2748
((((.((............))))))	chrX:48433454-48433685(+)$1	1	190	215	22.5321
.(((((..............)))))	chr2:55461870-55462080(+)$1	1	136	161	21.6527
((((((..............)))))	chr16:85840243-85840470(+)$1	1	64	89	22.6487
.((((.............)))))))	chr2:55460398-55460613(+)$1	1	25	50	21.9179
.((((((...........)).))))	chr21:35275688-35275940(-)$1	1	149	174	21.3344
.((((((...........)))))))	chr5:10402562-10402818(+)$1	1	61	86	23.5064
(((((((...........)))))).	chr1:109968837-109969138(-)$1	1	64	89	23.2740
)((((((............))))))	chr6:75950790-75951021(-)$1	1	203	228	23.0228
((.((((...........)))).))	chr12:125396257-125396495(-)$1	1	167	192	22.2187
((((((............)))))))	chr12:56553309-56553586(+)$1	1	207	232	23.9644
(...(((...........))).)))	chr3:101405293-101405501(-)$1	1	75	100	23.5118
(((((((...........)))))))	chr7:10973153-10973420(-)$1	1	25	50	24.6479
.((((((..............))))	chr2:162267732-162267996(+)$1	1	227	252	21.2528
((.((((...........))))...	chr1:23405968-23406236(+)$1	1	214	239	23.1649
(((((((.............)))))	chr11:77336661-77336926(-)$1	1	104	129	21.6541
.((((((...........)))))).	chr10:71962797-71963041(-)$1	1	162	187	21.6771
(((((((...........)))))))	chr8:99057070-99057306(-)$1	1	0	25	24.6479
.(((((............)))))))	chrX:71495293-71495496(-)$1	1	100	125	22.5840
))))(((.............)))..	chr12:57037527-57037763(-)$1	1	208	233	21.5438
(((((((.............)))))	chr6:33243740-33243943(+)$1	1	144	169	22.0752
)(((.((..............))))	chr1:19439076-19439348(-)$1	1	121	146	20.2701
)))((((.............)))).	chr2:198358038-198358287(-)$1	1	49	74	21.2483
(((((((............))))))	chr18:47016820-47017022(-)$1	1	68	93	24.0983
(((((((...........)))))))	chr4:109543072-109543279(+)$1	1	85	110	21.8603
(((((((...........)))))))	chr8:99057138-99057375(-)$1	1	69	94	24.6479
(.(((((...........))))).)	chr8:82627121-82627352(-)$1	1	88	113	23.4405
.((((((...........)))))).	chr2:70131355-70131662(+)$1	1	45	70	23.8213
(((((((............))))))	chr18:47016789-47017020(-)$1	1	66	91	24.0983
(...(((...........)))...)	chr7:10978332-10978608(-)$1	1	91	116	23.6316
..(((((.............)))))	chr1:19497153-19497390(-)$1	1	39	64	23.1226

#PSSM
g : 0.24	! : 0.08	h : 0.08	[ : 0.08	e : 0.07	c : 0.07	= : 0.07	: : 0.05	f : 0.05	a : 0.03	" : 0.03	b : 0.03	# : 0.01	d : 0.01	i : 0.01	F : 0.01	
g : 0.22	f : 0.19	d : 0.08	c : 0.08	e : 0.07	= : 0.07	h : 0.07	" : 0.05	! : 0.03	# : 0.01	: : 0.01	i : 0.01	b : 0.01	F : 0.01	[ : 0.01	
g : 0.22	f : 0.19	e : 0.15	d : 0.12	h : 0.07	= : 0.05	[ : 0.05	! : 0.03	c : 0.03	" : 0.03	i : 0.01	
g : 0.22	d : 0.17	f : 0.17	e : 0.14	h : 0.07	= : 0.05	[ : 0.03	c : 0.03	" : 0.03	b : 0.01	! : 0.01	i : 0.01	
g : 0.21	d : 0.17	f : 0.15	e : 0.12	c : 0.08	[ : 0.08	= : 0.05	h : 0.05	b : 0.01	a : 0.01	i : 0.01	
g : 0.21	f : 0.15	e : 0.12	d : 0.10	b : 0.10	c : 0.08	v : 0.05	= : 0.05	h : 0.05	y : 0.01	w : 0.01	i : 0.01	
f : 0.15	g : 0.12	u : 0.10	b : 0.10	c : 0.08	e : 0.08	v : 0.07	w : 0.07	d : 0.07	h : 0.05	= : 0.03	y : 0.01	i : 0.01	
t : 0.45	u : 0.24	v : 0.17	w : 0.10	y : 0.01	
t : 0.45	u : 0.24	v : 0.17	w : 0.10	y : 0.01	
t : 0.45	u : 0.24	v : 0.17	w : 0.10	y : 0.01	
t : 0.45	u : 0.24	v : 0.17	w : 0.10	y : 0.01	
t : 0.45	u : 0.24	v : 0.17	w : 0.10	y : 0.01	
t : 0.45	u : 0.24	v : 0.17	w : 0.10	y : 0.01	
t : 0.45	u : 0.24	v : 0.17	w : 0.10	y : 0.01	
t : 0.45	u : 0.24	v : 0.17	w : 0.10	y : 0.01	
t : 0.45	u : 0.24	v : 0.17	w : 0.10	y : 0.01	
t : 0.45	u : 0.24	v : 0.17	w : 0.10	y : 0.01	
t : 0.45	u : 0.24	v : 0.17	w : 0.10	y : 0.01	
g : 0.17	u : 0.14	d : 0.12	v : 0.12	w : 0.10	f : 0.08	c : 0.07	b : 0.07	h : 0.03	e : 0.03	y : 0.01	i : 0.01	
g : 0.17	f : 0.14	d : 0.12	b : 0.10	v : 0.10	w : 0.08	c : 0.07	= : 0.05	e : 0.05	h : 0.03	y : 0.01	a : 0.01	i : 0.01	
g : 0.21	d : 0.14	f : 0.14	e : 0.12	c : 0.08	h : 0.07	] : 0.05	= : 0.05	b : 0.03	w : 0.03	y : 0.01	2 : 0.01	i : 0.01	
g : 0.21	d : 0.19	f : 0.17	e : 0.14	h : 0.07	= : 0.05	2 : 0.03	c : 0.03	4 : 0.01	i : 0.01	] : 0.01	b : 0.01	3 : 0.01	
g : 0.21	f : 0.19	e : 0.15	d : 0.07	] : 0.07	h : 0.07	3 : 0.05	= : 0.05	b : 0.03	c : 0.03	2 : 0.01	4 : 0.01	i : 0.01	
g : 0.21	f : 0.19	e : 0.14	d : 0.08	c : 0.07	h : 0.07	3 : 0.05	= : 0.05	b : 0.03	a : 0.01	4 : 0.01	i : 0.01	: : 0.01	] : 0.01	
g : 0.21	e : 0.14	f : 0.10	d : 0.07	c : 0.07	h : 0.07	: : 0.07	3 : 0.05	] : 0.05	= : 0.05	b : 0.03	4 : 0.01	i : 0.01	2 : 0.01	a : 0.01	

#score	1301.2044502036115
#seq	57
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_CDS_m3_run2.txt

#BEAR
"""ddddqqqqqqqqdddd333	chr20:34501906-34502211(+)$1	305	9	31	15.8042
"ffffffqqqqqqqqffffff4	chr9:33030342-33030601(+)$1	259	70	92	14.5311
"""ddddqqqqqqqqddddccc	chr9:100777545-100777749(+)$1	204	180	202	15.1008
f####bbqqqqqqqqbb4444f	chr5:74066470-74066710(+)$1	240	79	101	15.8051
[ccc[bbqqqqqqqqbbccc]b	chr2:202589982-202590284(-)$1	302	109	131	15.2652
:ffffffqqqqqqqqffffff=	chrX:102471078-102471343(+)$1	265	136	158	13.4025
gggggggqqqqqqqqggggggg	chr5:70806754-70807020(+)$1	266	61	83	15.0928
bbbb[bbqqqqqqqqbb]bb]b	chrX:70604754-70604995(+)$1	241	126	148	13.7111
d[bb[bbqqqqqqqqbb]bb]d	chr17:34171850-34172140(+)$1	290	240	262	14.2828
"""ddddqqqqqqqqdddd333	chr9:75777658-75777877(+)$1	219	144	166	15.8042
====cccqqqqqqqqccc]===	chr7:104714991-104715227(+)$1	236	60	82	16.2278
cc"""bbqqqqqqqqbb4444c	chr1:38435141-38435383(-)$1	242	3	25	15.8508
eee!!bbqqqqqqqqbb22eee	chr20:34430411-34430752(+)$1	341	252	274	14.5900
=======qqqqqqqq=======	chr5:34935713-34935941(+)$1	228	29	51	15.7713
!!eeeeeqqqqqqqqeeeee22	chr19:2795992-2796225(+)$1	233	72	94	14.3579
[bb[cccqqqqqqqqccc]bbe	chr5:139819647-139819897(+)$1	250	37	59	15.0667
ee[ddddqqqqqqqqdddd22e	chr19:1969782-1970053(+)$1	271	207	229	14.4009
d####bbqqqqqqqqbb4444d	chr7:150758968-150759198(+)$1	230	27	49	15.7250
cca[cccqqqqqqqqccc]a22	chr2:128262159-128262381(-)$1	222	179	201	15.7360
a[eeeeeqqqqqqqqeeeee]a	chr21:47771248-47771503(+)$1	255	145	167	14.4035
[bb[cccqqqqqqqqccc]bb]	chr19:8509799-8510061(+)$1	262	160	182	15.1671
d####bbqqqqqqqqbb333dd	chrX:135309417-135309687(-)$1	270	167	189	15.6246
ee!!cccqqqqqqqqccc333e	chr19:15364873-15365165(-)$1	292	169	191	16.3986
gggg[bbqqqqqqqqbbggggg	chr1:27269089-27269367(+)$1	278	43	65	15.2829
###ddddqqqqqqqqdddd333	chr8:141727597-141727901(-)$1	304	149	171	15.7009
ggggggaqqqqqqqqa]ggggg	chr3:37343667-37343887(+)$1	220	85	107	15.2986
ff!!a[aqqqqqqqqa]a22ff	chr12:76442927-76443130(-)$1	203	28	50	15.0746
[ffffffqqqqqqqqffffff]	chr5:137520489-137520735(+)$1	246	174	196	14.5286
[bbacccqqqqqqqqccc]a]b	chr15:72552778-72553029(-)$1	251	195	217	15.4473
####cccqqqqqqqqccc4444	chr1:214793898-214794122(+)$1	224	143	165	16.7088
gggggggqqqqqqqqggggggg	chr19:6383222-6383460(-)$1	238	89	111	15.0928
eeee!!aqqqqqqqqa22eeee	chr2:232326260-232326533(-)$1	273	218	240	14.0459
####cccqqqqqqqqccc7777	chr12:56999513-56999747(-)$1	234	20	42	14.4480
!!eeeeeqqqqqqqqeeeee]b	chr7:72891676-72891891(-)$1	215	132	154	14.4605
ffffcccqqqqqqqqccc]fff	chr22:36691452-36691708(-)$1	256	46	68	15.1842
bdddd[aqqqqqqqqadddd]b	chr12:108082289-108082586(+)$1	297	195	217	13.9306
cc[ddddqqqqqqqqdddd]cc	chr18:19202587-19202844(+)$1	257	100	122	14.6974
!!eeeeeqqqqqqqqeeeee44	chr5:149754555-149754819(+)$1	264	68	90	14.6683
cccddddqqqqqqqqdddd]cc	chr9:140075209-140075437(-)$1	228	0	22	14.4636
b"""cccqqqqqqqqccc22bb	chr2:70165127-70165364(+)$1	237	144	166	15.4910
c"""cccqqqqqqqqccc]ccc	chr2:15746173-15746374(+)$1	201	168	190	16.2925
dffffffqqqqqqqqffffff:	chr12:120171868-120172121(-)$1	253	32	54	13.2500
b!!ddddqqqqqqqqdddd]bb	chr16:46726208-46726461(+)$1	253	164	186	14.3586
eee!!bbqqqqqqqqbb]eeee	chr11:9200446-9200721(-)$1	275	102	124	14.7940
iiiiiiiqqqqqqqqiiiiiii	chr11:118364902-118365111(+)$1	209	69	91	15.1721
!ffffffqqqqqqqqfffffff	chr7:100484978-100485224(+)$1	246	114	136	14.4287
!!addddqqqqqqqqdddd]a2	chr11:130005357-130005630(+)$1	273	159	181	14.9815
!ffffffqqqqqqqqffffff2	chr15:93522280-93522539(+)$1	259	204	226	14.4285
eeeecccqqqqqqqqccc22ee	chr8:145533357-145533598(+)$1	241	101	123	14.9842
####cccqqqqqqqqccc22dd	chr1:226339935-226340140(-)$1	205	153	175	15.8971
!!bb[bbqqqqqqqqbb]bb33	chrX:53430397-53430611(-)$1	214	126	148	15.0511
f"""cccqqqqqqqqcccffff	chr4:144469054-144469395(+)$1	341	255	277	15.8856
[ffffffqqqqqqqqffffff]	chr16:3831114-3831398(-)$1	284	74	96	14.5286
ee[ddddqqqqqqqqdddd]ee	chr17:35603640-35603953(-)$1	313	198	220	14.4435
cc"""bbqqqqqqqqbb4444c	chr12:80187547-80187808(-)$1	261	106	128	15.8508
ggggggaqqqqqqqqa]ggggg	chr3:37343581-37343834(+)$1	253	171	193	15.2986
a[cccbbqqqqqqqqbb]ccca	chr1:205689598-205689859(-)$1	261	219	241	15.2489
ccc[cccqqqqqqqqcccccce	chr4:104082393-104082625(-)$1	232	97	119	15.4871
gggggggqqqqqqqqggggggg	chr10:50532777-50533100(+)$1	323	156	178	15.0928
gggggbbqqqqqqqqbb]gggg	chr7:74114536-74114815(+)$1	279	206	228	15.2453
ggggggaqqqqqqqqa]ggggg	chr20:3782484-3782766(+)$1	282	151	173	15.2986
eee[cccqqqqqqqqccc]eee	chr5:131951594-131951808(+)$1	214	128	150	15.3363
h[ccc[aqqqqqqqqa]ccchh	chr9:94830216-94830471(-)$1	255	22	44	14.7229
dd[cccaqqqqqqqqa]ccc]d	chr9:131256704-131256987(+)$1	283	128	150	15.1801

#otherMatches

#Seq PSSM
ACUAGGGUUAUUCAUUCCUUCC	chr20:34501906-34502211(+)$1	305	9	31	15.8042
UAUUUAAUUUUCUUUUUAAAUU	chr9:33030342-33030601(+)$1	259	70	92	14.5311
CCUGCAGAAACAGAACUGUUCA	chr9:100777545-100777749(+)$1	204	180	202	15.1008
GGAAGAGAAUGGUUACUAAAGU	chr5:74066470-74066710(+)$1	240	79	101	15.8051
AUGGAGAAUACAGAAUCCCAAA	chr2:202589982-202590284(-)$1	302	109	131	15.2652
AGCCUGGAGGAAAUAUCAGGCG	chrX:102471078-102471343(+)$1	265	136	158	13.4025
UGUUACUGAGGAAAAGGUGGCA	chr5:70806754-70807020(+)$1	266	61	83	15.0928
UCCUGGCCAAUUGCUGCAAGUG	chrX:70604754-70604995(+)$1	241	126	148	13.7111
AUUGGGGGAUUUGAACCACAUU	chr17:34171850-34172140(+)$1	290	240	262	14.2828
GCCUCUUGUUUUAUAAAGACUA	chr9:75777658-75777877(+)$1	219	144	166	15.8042
AAGUAUUAAAUGUGCAAUAAUU	chr7:104714991-104715227(+)$1	236	60	82	16.2278
GUACAGCGCAAGCAAGCCAGGA	chr1:38435141-38435383(-)$1	242	3	25	15.8508
UCUGUGAGUAACAAAUCUGGGA	chr20:34430411-34430752(+)$1	341	252	274	14.5900
AAAAGGAGCAAGAAAUCCUUUU	chr5:34935713-34935941(+)$1	228	29	51	15.7713
UGUUUUUAUUCCAGGAGAAAGU	chr19:2795992-2796225(+)$1	233	72	94	14.3579
UGAAUGGUUUUGUUUCCAGUCG	chr5:139819647-139819897(+)$1	250	37	59	15.0667
GGAGGCUGCUGGCAGGGCCGCC	chr19:1969782-1970053(+)$1	271	207	229	14.4009
CCUCUCCCCCAUCCAGGUUAUG	chr7:150758968-150759198(+)$1	230	27	49	15.7250
CUGUGGAACAUUGUAUCCUCUU	chr2:128262159-128262381(-)$1	222	179	201	15.7360
GAGAUCAGGCGCUUGUGGUCCC	chr21:47771248-47771503(+)$1	255	145	167	14.4035
CGUGCCGAGCGGCAACGGGGCU	chr19:8509799-8510061(+)$1	262	160	182	15.1671
AAAGAUGGGCAGCAACAAAAUG	chrX:135309417-135309687(-)$1	270	167	189	15.6246
UCCAGCUCCUCUGACAGCGAAG	chr19:15364873-15365165(-)$1	292	169	191	16.3986
GUCCCUGAUUGUAAGCAGGAUA	chr1:27269089-27269367(+)$1	278	43	65	15.2829
GAAGACAGGCCACAGUGUCCUG	chr8:141727597-141727901(-)$1	304	149	171	15.7009
UAGUCGCAUCAAACAGAUGACU	chr3:37343667-37343887(+)$1	220	85	107	15.2986
UUUUCCCUACAUUAUGAGCCAG	chr12:76442927-76443130(-)$1	203	28	50	15.0746
GUCACCUGAGACAGAGGGUGGG	chr5:137520489-137520735(+)$1	246	174	196	14.5286
ACGGACCUCUCCUUUGGUACAU	chr15:72552778-72553029(-)$1	251	195	217	15.4473
CAUUGCCCGGCAUCAGGCUUCA	chr1:214793898-214794122(+)$1	224	143	165	16.7088
GGACGACCUGGAGAUGUCGUCC	chr19:6383222-6383460(-)$1	238	89	111	15.0928
CUCAGAGgaugaggacgaugag	chr2:232326260-232326533(-)$1	273	218	240	14.0459
AAAGCAGAUAAGACCCUGGCCA	chr12:56999513-56999747(-)$1	234	20	42	14.4480
CUGUCGGAAAUCCCCUUGACUC	chr7:72891676-72891891(-)$1	215	132	154	14.4605
CUUCCAGGAAUAAAGCUGAGAA	chr22:36691452-36691708(-)$1	256	46	68	15.1842
CCUGGAGGAUGGUGACCCAGAG	chr12:108082289-108082586(+)$1	297	195	217	13.9306
UUUUGAUGAAAUUGAGUCAUGA	chr18:19202587-19202844(+)$1	257	100	122	14.6974
AGCCGCCCAGGUCCAGGUGGGG	chr5:149754555-149754819(+)$1	264	68	90	14.6683
GGCCCUGUCCUUGCCCAGGUGC	chr9:140075209-140075437(-)$1	228	0	22	14.4636
UGAUCUGGACUGGAGCAGCAGC	chr2:70165127-70165364(+)$1	237	144	166	15.4910
UCUUUCCAAGGCACCGGAUGGU	chr2:15746173-15746374(+)$1	201	168	190	16.2925
AGCUGCUAGAAAAAGAGCGGCA	chr12:120171868-120172121(-)$1	253	32	54	13.2500
UGAAUUCAAAUAUUGGAAUAAG	chr16:46726208-46726461(+)$1	253	164	186	14.3586
UGGAAGUGCGUGAAGACCCCAG	chr11:9200446-9200721(-)$1	275	102	124	14.7940
AGAAUAAUUAACAUUUUGUUUU	chr11:118364902-118365111(+)$1	209	69	91	15.1721
AAGGAUAAGUGGCUGUGUCCUC	chr7:100484978-100485224(+)$1	246	114	136	14.4287
ACCCCUGUGGACGUCCGGGUGA	chr11:130005357-130005630(+)$1	273	159	181	14.9815
AUCCUGGAAAACAACUCAGGAA	chr15:93522280-93522539(+)$1	259	204	226	14.4285
UGUCCACCCUGAAGAGUGAAGA	chr8:145533357-145533598(+)$1	241	101	123	14.9842
GAAAUGGUACAUAGUUCAGGUG	chr1:226339935-226340140(-)$1	205	153	175	15.8971
AUUGGUAGAAGAGAUUGGCAUG	chrX:53430397-53430611(-)$1	214	126	148	15.0511
UUUUUGUGUAAUGUAGCAGAGU	chr4:144469054-144469395(+)$1	341	255	277	15.8856
CUUUUCUGUCUUUAAAGGAAAU	chr16:3831114-3831398(-)$1	284	74	96	14.5286
AUGCUGAGAUUGAGGUCAGGGU	chr17:35603640-35603953(-)$1	313	198	220	14.4435
GAAAAUGAACAAGAACAACAAU	chr12:80187547-80187808(-)$1	261	106	128	15.8508
UAGUCGCAUCAAACAGAUGACU	chr3:37343581-37343834(+)$1	253	171	193	15.2986
CAUUCCAGGAGAGUAUGUGAAG	chr1:205689598-205689859(-)$1	261	219	241	15.2489
UCUUAGAAGUGAAAAUCUGGAG	chr4:104082393-104082625(-)$1	232	97	119	15.4871
UGUGCCUUAAGCAAUGGGCACG	chr10:50532777-50533100(+)$1	323	156	178	15.0928
UUCAUUCAUCAUUAAGAGGUGA	chr7:74114536-74114815(+)$1	279	206	228	15.2453
CCGGCCCAUCCUCAAGAGGCUG	chr20:3782484-3782766(+)$1	282	151	173	15.2986
UUACUUUAAGAAAAAGAAAUGA	chr5:131951594-131951808(+)$1	214	128	150	15.3363
UAUUUGUUCUUUAGUAGAGAAA	chr9:94830216-94830471(-)$1	255	22	44	14.7229
CCCUGACAUCCUGAAGAUCACG	chr9:131256704-131256987(+)$1	283	128	150	15.1801

#DB
...((((........))))...	chr20:34501906-34502211(+)$1	1	9	31	15.8042
.((((((........)))))).	chr9:33030342-33030601(+)$1	1	70	92	14.5311
...((((........)))))))	chr9:100777545-100777749(+)$1	1	180	202	15.1008
(....((........))....)	chr5:74066470-74066710(+)$1	1	79	101	15.8051
.(((.((........))))).)	chr2:202589982-202590284(-)$1	1	109	131	15.2652
.((((((........))))))(	chrX:102471078-102471343(+)$1	1	136	158	13.4025
(((((((........)))))))	chr5:70806754-70807020(+)$1	1	61	83	15.0928
((((.((........)).)).)	chrX:70604754-70604995(+)$1	1	126	148	13.7111
(.((.((........)).)).)	chr17:34171850-34172140(+)$1	1	240	262	14.2828
...((((........))))...	chr9:75777658-75777877(+)$1	1	144	166	15.8042
(((((((........))).)))	chr7:104714991-104715227(+)$1	1	60	82	16.2278
((...((........))....)	chr1:38435141-38435383(-)$1	1	3	25	15.8508
(((..((........))..)))	chr20:34430411-34430752(+)$1	1	252	274	14.5900
(((((((........)))))))	chr5:34935713-34935941(+)$1	1	29	51	15.7713
..(((((........)))))..	chr19:2795992-2796225(+)$1	1	72	94	14.3579
.((.(((........))).)))	chr5:139819647-139819897(+)$1	1	37	59	15.0667
((.((((........))))..)	chr19:1969782-1970053(+)$1	1	207	229	14.4009
(....((........))....)	chr7:150758968-150759198(+)$1	1	27	49	15.7250
(((.(((........))).)..	chr2:128262159-128262381(-)$1	1	179	201	15.7360
(.(((((........))))).)	chr21:47771248-47771503(+)$1	1	145	167	14.4035
.((.(((........))).)).	chr19:8509799-8510061(+)$1	1	160	182	15.1671
(....((........))...))	chrX:135309417-135309687(-)$1	1	167	189	15.6246
((..(((........)))...)	chr19:15364873-15365165(-)$1	1	169	191	16.3986
((((.((........)))))))	chr1:27269089-27269367(+)$1	1	43	65	15.2829
...((((........))))...	chr8:141727597-141727901(-)$1	1	149	171	15.7009
(((((((........).)))))	chr3:37343667-37343887(+)$1	1	85	107	15.2986
((..(.(........).)..))	chr12:76442927-76443130(-)$1	1	28	50	15.0746
.((((((........)))))).	chr5:137520489-137520735(+)$1	1	174	196	14.5286
.((((((........))).).)	chr15:72552778-72553029(-)$1	1	195	217	15.4473
....(((........)))....	chr1:214793898-214794122(+)$1	1	143	165	16.7088
(((((((........)))))))	chr19:6383222-6383460(-)$1	1	89	111	15.0928
((((..(........)..))))	chr2:232326260-232326533(-)$1	1	218	240	14.0459
....(((........)))....	chr12:56999513-56999747(-)$1	1	20	42	14.4480
..(((((........))))).)	chr7:72891676-72891891(-)$1	1	132	154	14.4605
(((((((........))).)))	chr22:36691452-36691708(-)$1	1	46	68	15.1842
(((((.(........))))).)	chr12:108082289-108082586(+)$1	1	195	217	13.9306
((.((((........)))).))	chr18:19202587-19202844(+)$1	1	100	122	14.6974
..(((((........)))))..	chr5:149754555-149754819(+)$1	1	68	90	14.6683
(((((((........)))).))	chr9:140075209-140075437(-)$1	1	0	22	14.4636
(...(((........)))..))	chr2:70165127-70165364(+)$1	1	144	166	15.4910
(...(((........))).)))	chr2:15746173-15746374(+)$1	1	168	190	16.2925
)((((((........)))))).	chr12:120171868-120172121(-)$1	1	32	54	13.2500
(..((((........)))).))	chr16:46726208-46726461(+)$1	1	164	186	14.3586
(((..((........)).))))	chr11:9200446-9200721(-)$1	1	102	124	14.7940
(((((((........)))))))	chr11:118364902-118365111(+)$1	1	69	91	15.1721
.((((((........)))))))	chr7:100484978-100485224(+)$1	1	114	136	14.4287
..(((((........)))).).	chr11:130005357-130005630(+)$1	1	159	181	14.9815
.((((((........)))))).	chr15:93522280-93522539(+)$1	1	204	226	14.4285
(((((((........)))..))	chr8:145533357-145533598(+)$1	1	101	123	14.9842
....(((........)))..))	chr1:226339935-226340140(-)$1	1	153	175	15.8971
..((.((........)).))..	chrX:53430397-53430611(-)$1	1	126	148	15.0511
(...(((........)))))))	chr4:144469054-144469395(+)$1	1	255	277	15.8856
.((((((........)))))).	chr16:3831114-3831398(-)$1	1	74	96	14.5286
((.((((........)))).))	chr17:35603640-35603953(-)$1	1	198	220	14.4435
((...((........))....)	chr12:80187547-80187808(-)$1	1	106	128	15.8508
(((((((........).)))))	chr3:37343581-37343834(+)$1	1	171	193	15.2986
(.(((((........)).))))	chr1:205689598-205689859(-)$1	1	219	241	15.2489
(((.(((........)))))))	chr4:104082393-104082625(-)$1	1	97	119	15.4871
(((((((........)))))))	chr10:50532777-50533100(+)$1	1	156	178	15.0928
(((((((........)).))))	chr7:74114536-74114815(+)$1	1	206	228	15.2453
(((((((........).)))))	chr20:3782484-3782766(+)$1	1	151	173	15.2986
(((.(((........))).)))	chr5:131951594-131951808(+)$1	1	128	150	15.3363
(.(((.(........).)))))	chr9:94830216-94830471(-)$1	1	22	44	14.7229
((.((((........).))).)	chr9:131256704-131256987(+)$1	1	128	150	15.1801

#PSSM
g : 0.12	e : 0.12	c : 0.10	! : 0.10	[ : 0.09	d : 0.07	" : 0.06	f : 0.06	b : 0.06	# : 0.06	= : 0.03	a : 0.03	: : 0.01	i : 0.01	h : 0.01	
f : 0.14	g : 0.12	e : 0.12	# : 0.10	c : 0.10	" : 0.09	! : 0.09	b : 0.06	[ : 0.06	= : 0.03	d : 0.03	i : 0.01	
e : 0.14	" : 0.12	f : 0.12	g : 0.12	# : 0.10	b : 0.09	c : 0.07	[ : 0.06	! : 0.04	= : 0.03	a : 0.03	d : 0.01	i : 0.01	
d : 0.17	f : 0.12	g : 0.12	# : 0.09	e : 0.09	" : 0.07	[ : 0.07	c : 0.06	! : 0.06	b : 0.04	= : 0.03	a : 0.01	i : 0.01	
c : 0.29	d : 0.17	f : 0.10	g : 0.10	[ : 0.07	e : 0.06	# : 0.04	! : 0.04	" : 0.03	= : 0.01	a : 0.01	i : 0.01	
c : 0.26	b : 0.21	d : 0.15	f : 0.10	g : 0.09	e : 0.06	[ : 0.04	= : 0.01	! : 0.01	i : 0.01	
c : 0.25	b : 0.21	d : 0.15	a : 0.12	f : 0.10	e : 0.06	g : 0.04	= : 0.01	i : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.25	b : 0.21	d : 0.15	a : 0.12	f : 0.10	e : 0.06	g : 0.04	= : 0.01	i : 0.01	
c : 0.25	b : 0.21	d : 0.17	f : 0.10	] : 0.09	e : 0.06	g : 0.04	= : 0.01	2 : 0.01	i : 0.01	
c : 0.29	d : 0.17	f : 0.10	g : 0.10	] : 0.09	4 : 0.06	e : 0.06	2 : 0.03	= : 0.01	3 : 0.01	a : 0.01	i : 0.01	
d : 0.17	f : 0.12	g : 0.12	] : 0.12	e : 0.09	4 : 0.07	c : 0.07	2 : 0.07	b : 0.04	3 : 0.03	= : 0.01	7 : 0.01	i : 0.01	
f : 0.14	g : 0.12	e : 0.12	c : 0.10	3 : 0.07	4 : 0.07	b : 0.07	2 : 0.07	] : 0.07	= : 0.03	a : 0.03	7 : 0.01	d : 0.01	i : 0.01	
f : 0.15	] : 0.12	g : 0.12	c : 0.09	4 : 0.09	e : 0.09	3 : 0.07	b : 0.06	2 : 0.04	= : 0.03	d : 0.03	7 : 0.01	i : 0.01	a : 0.01	h : 0.01	
e : 0.15	g : 0.12	b : 0.10	c : 0.09	f : 0.07	d : 0.07	3 : 0.06	2 : 0.06	4 : 0.04	= : 0.04	] : 0.04	a : 0.03	7 : 0.01	: : 0.01	i : 0.01	h : 0.01	

#score	963.9046392170469
#seq	64
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_transcript_m3_run1.txt

#BEAR
!a[ccc[bbqqqqqqqqbb]ccc]a	chr9:139743190-139743462(+)$1	272	91	116	16.0220
:dddd[cccqqqqqqqqccc22ddd	chr19:428703-429025(-)$1	322	284	309	14.7335
d!!a!!cccqqqqqqqqccc22a55	chr7:6769452-6769732(+)$1	280	182	207	15.8338
hh!!cccbbqqqqqqqqbb]ccc]h	chr5:176516603-176516882(+)$1	279	186	211	15.4281
cc####cccqqqqqqqqccc333cc	chr18:20798399-20798617(+)$1	218	104	129	17.1770
####eeeeeqqqqqqqqeeeee333	chr7:158339886-158340146(-)$1	260	141	166	15.9243
bb[ffffffqqqqqqqqffffffbb	chr6:44122734-44123003(+)$1	269	31	56	15.2779
cc[ffffffqqqqqqqqffffffcc	chr1:21982269-21982562(-)$1	293	258	283	16.3281
bffffff[aqqqqqqqqaffffffH	chr17:73996468-73996728(+)$1	260	161	186	15.0596
h!!ccccccqqqqqqqqccc]ccc5	chr16:88730039-88730310(+)$1	271	197	222	16.4617
ddddccc[aqqqqqqqqa]ccc]dd	chr7:150820150-150820401(+)$1	251	209	234	15.3106
ffccc[cccqqqqqqqqccc22ccc	chr19:5229208-5229544(-)$1	336	166	191	16.5264
!ffffff[aqqqqqqqqa]ffffff	chr6:4134369-4134618(-)$1	249	67	92	15.9884
cc####cccqqqqqqqqccc4444c	chr2:74653859-74654137(-)$1	278	26	51	17.0400
eee!!a[bbqqqqqqqqbb]a22ee	chr16:10856717-10856975(+)$1	258	143	168	14.8970
ddd[a[cccqqqqqqqqccc]a]dd	chr6:144901237-144901510(+)$1	273	24	49	16.2690
e"""eeeeeqqqqqqqqeeeee333	chr19:48893268-48893552(-)$1	284	189	214	15.8530
[eeeee[bbqqqqqqqqbb]eeeee	chr19:49950880-49951173(-)$1	293	191	216	14.9600
eeeee[cccqqqqqqqqccc]eeee	chr10:113918508-113918829(-)$1	321	41	66	16.3734
###dddd[aqqqqqqqqa]dddd33	chr2:102434036-102434329(+)$1	293	113	138	15.6417
cc!!eeeeeqqqqqqqqeeeee]cc	chr7:72741791-72742032(-)$1	241	194	219	15.3891
ggggggg[aqqqqqqqqa]gggggg	chr18:55713827-55714125(+)$1	298	82	107	16.2386
"""ccccccqqqqqqqqccc]ccc]	chr6:15327675-15327971(+)$1	296	241	266	17.3272
iiiiiiiiiqqqqqqqqiiiiiiii	chr10:724297-724582(-)$1	285	258	283	16.0275
ffff[ddddqqqqqqqqddddffff	chr19:45569894-45570199(+)$1	305	246	271	14.3808
f!!bb[cccqqqqqqqqccc]bbff	chr2:132267981-132268240(+)$1	259	83	108	16.1971
cccffffffqqqqqqqqffffff::	chr3:9438777-9439026(-)$1	249	9	34	14.3083
cccffffffqqqqqqqqffffffA}	chr7:99001241-99001515(-)$1	274	216	241	14.5089
a[gggggggqqqqqqqqggggggga	chr19:4329350-4329638(-)$1	288	0	25	16.2451
eeeee[cccqqqqqqqqccc22eee	chr15:72496335-72496582(-)$1	247	97	122	16.1871
"ffffffbbqqqqqqqqbb]fffff	chr22:50220735-50221039(-)$1	304	180	205	15.3954
eee[eeeeeqqqqqqqqeeeeeeee	chrX:133005948-133006241(-)$1	293	65	90	14.6095
fffff[cccqqqqqqqqcccfffff	chr3:127999477-127999761(+)$1	284	6	31	16.3964
bb[ffffffqqqqqqqqffffff44	chr17:79892313-79892575(-)$1	262	43	68	16.1639
f!!bb[cccqqqqqqqqccc]bb55	chr22:25778481-25778752(-)$1	271	180	205	15.2840
=========qqqqqqqq========	chr7:94567418-94567689(+)$1	271	189	214	16.6040
ccc[cccbbqqqqqqqqbb]ccc]c	chr10:75578280-75578508(-)$1	228	157	182	15.7598
[ccc!!cccqqqqqqqqccc22ccc	chr5:73188047-73188306(+)$1	259	188	213	16.8359
!!gggggggqqqqqqqqggggggg2	chr11:68116725-68116971(+)$1	246	124	149	16.3817
###ffffffqqqqqqqqffffff22	chr17:36863817-36864081(+)$1	264	3	28	16.3181
=========qqqqqqqq========	chr16:50619779-50619997(+)$1	218	90	115	16.6040
bb[ccc!!aqqqqqqqqa22ccc]b	chr20:62299847-62300087(+)$1	240	143	168	15.0307
gggg[bb[aqqqqqqqqa]bb]ggg	chr7:157156481-157156746(+)$1	265	44	69	14.9672
c####ddddqqqqqqqqdddd333c	chr15:72496026-72496293(-)$1	267	210	235	15.4908
#ddddddddqqqqqqqqdddd]ddd	chr9:127261002-127261221(-)$1	219	177	202	13.8356
ii[ccc[bbqqqqqqqqbb]cccii	chr1:36787578-36787824(+)$1	246	44	69	15.8141
[dddd[a[aqqqqqqqqa]a]dddd	chr10:111986485-111986751(+)$1	266	118	143	15.2473
hhhhh[cccqqqqqqqqccc]hhhh	chr9:140512685-140512990(-)$1	305	35	60	15.0576
fffff[cccqqqqqqqqccc4444f	chr1:19206700-19206986(-)$1	286	160	185	16.7145
"""ffffffqqqqqqqqffffff33	chr16:28847496-28847746(+)$1	250	22	47	17.0034
"""bb[cccqqqqqqqqccc]bb33	chr2:220150424-220150687(+)$1	263	63	88	17.0162
cc[ffffffqqqqqqqqffffffcc	chr11:70270961-70271222(+)$1	261	166	191	16.3281
cc[ffffffqqqqqqqqffffff]c	chr21:16379085-16379426(-)$1	341	268	293	16.4406
eee"""cccqqqqqqqqccc66666	chr3:52516813-52517110(+)$1	297	139	164	14.6010
eeeee[cccqqqqqqqqccc]eeee	chr9:95477237-95477482(-)$1	245	8	33	16.3734
a!!ffffffqqqqqqqqffffffa]	chr7:105559583-105559839(+)$1	256	144	169	16.5875
d[bbeeeeeqqqqqqqqeeeee444	chr1:1559375-1559668(+)$1	293	30	55	14.8109
!!bb!!cccqqqqqqqqccc22bb2	chr6:348998-349293(+)$1	295	68	93	15.9990
""gggggggqqqqqqqqggggggg]	chr3:149683579-149683840(-)$1	261	144	169	16.4476
eeeee!!bbqqqqqqqqbb22eeee	chr22:50209447-50209732(-)$1	285	96	121	14.7691
eeeeeddddqqqqqqqqdddd]eee	chr13:99055927-99056175(+)$1	248	53	78	14.2423

#otherMatches

#Seq PSSM
AGCGGGGUUGGGGACGGAAGCCUUC	chr9:139743190-139743462(+)$1	272	91	116	16.0220
GUCCACAUGGUUCAAAACAUCAUGG	chr19:428703-429025(-)$1	322	284	309	14.7335
AGGGGAACCGGGCGGGAGGUGGCGA	chr7:6769452-6769732(+)$1	280	182	207	15.8338
CCAGGCCCUGAGAAGGUGGCGGCAG	chr5:176516603-176516882(+)$1	279	186	211	15.4281
gcucccgcauccucacuugcccugc	chr18:20798399-20798617(+)$1	218	104	129	17.1770
acagggaaugaaguucaauuuugca	chr7:158339886-158340146(-)$1	260	141	166	15.9243
CUGCUCUCCCCCAUGAUGGAGGGAG	chr6:44122734-44123003(+)$1	269	31	56	15.2779
CAGAGUUCAACAAGAGGUGAACUUG	chr1:21982269-21982562(-)$1	293	258	283	16.3281
GUCCUGGUGAAUAAAGGCCCAGGGG	chr17:73996468-73996728(+)$1	260	161	186	15.0596
ACACAGGCCCGAGGGCAGGCGCUGG	chr16:88730039-88730310(+)$1	271	197	222	16.4617
CUGCCCCAGGAGCUUGACAGGGUGC	chr7:150820150-150820401(+)$1	251	209	234	15.3106
cccugccgccuccuccCGCGCUCAG	chr19:5229208-5229544(-)$1	336	166	191	16.5264
UGCAGGUAGAUUCCCUCCCAUCUGC	chr6:4134369-4134618(-)$1	249	67	92	15.9884
ACCAAAGUUCAAAACAAAACCCCAG	chr2:74653859-74654137(-)$1	278	26	51	17.0400
UCUGGCGUUGGUGUAGAAAGGAAGG	chr16:10856717-10856975(+)$1	258	143	168	14.8970
AACUUGUUUGGAAAUGGAGAGACGU	chr6:144901237-144901510(+)$1	273	24	49	16.2690
uggacucuugggucugagggaggag	chr19:48893268-48893552(-)$1	284	189	214	15.8530
GUCUGUGCUACUAGGAGGGGGUGGA	chr19:49950880-49951173(-)$1	293	191	216	14.9600
GAUAUUUUCUUUUGUAUGAAUGUGU	chr10:113918508-113918829(-)$1	321	41	66	16.3734
GAAGAGGGCGGGUCCAGGGCUUCAG	chr2:102434036-102434329(+)$1	293	113	138	15.6417
ACGGGUGCGAGGUGGGGCGCACAGU	chr7:72741791-72742032(-)$1	241	194	219	15.3891
GCUUGGAAUGUAAACAGAGUCCGAG	chr18:55713827-55714125(+)$1	298	82	107	16.2386
CAAUCUCUGGGGUAAAACAGCAGAA	chr6:15327675-15327971(+)$1	296	241	266	17.3272
UUUAAAAAAUUCUUUCUUUUUUUAA	chr10:724297-724582(-)$1	285	258	283	16.0275
GUGGAGGACAAGGGGUGGUCCCCAC	chr19:45569894-45570199(+)$1	305	246	271	14.3808
CCCUGAGCCCCAGGUCUGGCACAGA	chr2:132267981-132268240(+)$1	259	83	108	16.1971
CCUUUCCCGUGGGAAGUCGGGAACA	chr3:9438777-9439026(-)$1	249	9	34	14.3083
CCAGGUCCCAUUCCCUGGGGGCCAG	chr7:99001241-99001515(-)$1	274	216	241	14.5089
GAGUUAUUUGUCGGAGAGGGUAACC	chr19:4329350-4329638(-)$1	288	0	25	16.2451
CAUGUCCCCUGUCCUCUGGGCUGCA	chr15:72496335-72496582(-)$1	247	97	122	16.1871
ggccgagucgggcugugggucucgg	chr22:50220735-50221039(-)$1	304	180	205	15.3954
UUAUGAUGUGCCCAAAGACAUUUAA	chrX:133005948-133006241(-)$1	293	65	90	14.6095
GCAUUUGCCCUCCACAUGGCAGUGC	chr3:127999477-127999761(+)$1	284	6	31	16.3964
CCUGGUCAGUGUGUUUCCUGACCCU	chr17:79892313-79892575(-)$1	262	43	68	16.1639
uggcacuuggguuuagacagaugaa	chr22:25778481-25778752(-)$1	271	180	205	15.2840
uuuguggaaaaauugucuuccauga	chr7:94567418-94567689(+)$1	271	189	214	16.6040
CUGUGCUGCUUGGCUGUGCUGGCCC	chr10:75578280-75578508(-)$1	228	157	182	15.7598
augccugcaccucccucugccugug	chr5:73188047-73188306(+)$1	259	188	213	16.8359
GUUGGCCAUGGGUUUGAAUGGUUAA	chr11:68116725-68116971(+)$1	246	124	149	16.3817
GCAGGGCCCCCUGAGCAGGGUCUGG	chr17:36863817-36864081(+)$1	264	3	28	16.3181
UGGUGCUUACAGCAUGCUAGGCAUU	chr16:50619779-50619997(+)$1	218	90	115	16.6040
UAGCAGAACCCCACAGAGAGCUGGU	chr20:62299847-62300087(+)$1	240	143	168	15.0307
gugaggggucagagGUCAGCUGUCG	chr7:157156481-157156746(+)$1	265	44	69	14.9672
GCUUUGGCUUUGAUCCCAGCUUUCC	chr15:72496026-72496293(-)$1	267	210	235	15.4908
UGGGGUGGGUUUCUCACCCCAGCCC	chr9:127261002-127261221(-)$1	219	177	202	13.8356
AGACUGAGUCACUGAGAAUGCAGCU	chr1:36787578-36787824(+)$1	246	44	69	15.8141
ggagcaugugaggggaggggagcuc	chr10:111986485-111986751(+)$1	266	118	143	15.2473
UCGGUUGGGAGGAAUGCCCCUGCCG	chr9:140512685-140512990(-)$1	305	35	60	15.0576
GCGGGCUCGGGGGAAGAUGAAUCUC	chr1:19206700-19206986(-)$1	286	160	185	16.7145
GAAUUUGGCAUGGAAGAGCUGAGGG	chr16:28847496-28847746(+)$1	250	22	47	17.0034
ACUAGGCAGAGGUGAGGCUGGCUCA	chr2:220150424-220150687(+)$1	263	63	88	17.0162
ACACCUCUGGGUGGCGACGGAGGGU	chr11:70270961-70271222(+)$1	261	166	191	16.3281
CUCCUUUGGCACAGAGACUAAGGAA	chr21:16379085-16379426(-)$1	341	268	293	16.4406
caugugcuggaggagaacaggguag	chr3:52516813-52517110(+)$1	297	139	164	14.6010
GUGUUCUGCAGCGAGAAGCACAGCA	chr9:95477237-95477482(-)$1	245	8	33	16.3734
AUCAUAGUGCUcuuuuaugcuauug	chr7:105559583-105559839(+)$1	256	144	169	16.5875
UGCCUCCUGACCGCUCCCAGGAAGA	chr1:1559375-1559668(+)$1	293	30	55	14.8109
GGGCGAGGGCUCCUUCCCCCAAGCA	chr6:348998-349293(+)$1	295	68	93	15.9990
UUUGUCUUAGCAAUUAAUGGGAUAU	chr3:149683579-149683840(-)$1	261	144	169	16.4476
UGUGGGUGCAUGAGUUGGCUGCUGC	chr22:50209447-50209732(-)$1	285	96	121	14.7691
ACUGGGAAGAAUGCUGGCUUCUCCA	chr13:99055927-99056175(+)$1	248	53	78	14.2423

#DB
.(.(((.((........)).))).)	chr9:139743190-139743462(+)$1	1	91	116	16.0220
.((((.(((........)))..)))	chr19:428703-429025(-)$1	1	284	309	14.7335
(..(..(((........)))..)..	chr7:6769452-6769732(+)$1	1	182	207	15.8338
((..(((((........)).))).)	chr5:176516603-176516882(+)$1	1	186	211	15.4281
((....(((........)))...))	chr18:20798399-20798617(+)$1	1	104	129	17.1770
....(((((........)))))...	chr7:158339886-158340146(-)$1	1	141	166	15.9243
((.((((((........))))))))	chr6:44122734-44123003(+)$1	1	31	56	15.2779
((.((((((........))))))))	chr1:21982269-21982562(-)$1	1	258	283	16.3281
)((((((.(........))))))))	chr17:73996468-73996728(+)$1	1	161	186	15.0596
(..((((((........))).))).	chr16:88730039-88730310(+)$1	1	197	222	16.4617
(((((((.(........).))).))	chr7:150820150-150820401(+)$1	1	209	234	15.3106
(((((.(((........)))..)))	chr19:5229208-5229544(-)$1	1	166	191	16.5264
.((((((.(........).))))))	chr6:4134369-4134618(-)$1	1	67	92	15.9884
((....(((........)))....)	chr2:74653859-74654137(-)$1	1	26	51	17.0400
(((..(.((........)).)..))	chr16:10856717-10856975(+)$1	1	143	168	14.8970
(((.(.(((........))).).))	chr6:144901237-144901510(+)$1	1	24	49	16.2690
(...(((((........)))))...	chr19:48893268-48893552(-)$1	1	189	214	15.8530
.(((((.((........)).)))))	chr19:49950880-49951173(-)$1	1	191	216	14.9600
(((((.(((........))).))))	chr10:113918508-113918829(-)$1	1	41	66	16.3734
...((((.(........).))))..	chr2:102434036-102434329(+)$1	1	113	138	15.6417
((..(((((........))))).))	chr7:72741791-72742032(-)$1	1	194	219	15.3891
(((((((.(........).))))))	chr18:55713827-55714125(+)$1	1	82	107	16.2386
...((((((........))).))).	chr6:15327675-15327971(+)$1	1	241	266	17.3272
(((((((((........))))))))	chr10:724297-724582(-)$1	1	258	283	16.0275
((((.((((........))))))))	chr19:45569894-45570199(+)$1	1	246	271	14.3808
(..((.(((........))).))))	chr2:132267981-132268240(+)$1	1	83	108	16.1971
)))((((((........))))))..	chr3:9438777-9439026(-)$1	1	9	34	14.3083
)))((((((........))))))).	chr7:99001241-99001515(-)$1	1	216	241	14.5089
(.(((((((........))))))))	chr19:4329350-4329638(-)$1	1	0	25	16.2451
(((((.(((........)))..)))	chr15:72496335-72496582(-)$1	1	97	122	16.1871
.((((((((........)).)))))	chr22:50220735-50221039(-)$1	1	180	205	15.3954
(((.(((((........))))))))	chrX:133005948-133006241(-)$1	1	65	90	14.6095
(((((.(((........))))))))	chr3:127999477-127999761(+)$1	1	6	31	16.3964
((.((((((........))))))..	chr17:79892313-79892575(-)$1	1	43	68	16.1639
(..((.(((........))).))..	chr22:25778481-25778752(-)$1	1	180	205	15.2840
(((((((((........))))))))	chr7:94567418-94567689(+)$1	1	189	214	16.6040
(((.(((((........)).))).)	chr10:75578280-75578508(-)$1	1	157	182	15.7598
.(((..(((........)))..)))	chr5:73188047-73188306(+)$1	1	188	213	16.8359
..(((((((........))))))).	chr11:68116725-68116971(+)$1	1	124	149	16.3817
...((((((........))))))..	chr17:36863817-36864081(+)$1	1	3	28	16.3181
(((((((((........))))))))	chr16:50619779-50619997(+)$1	1	90	115	16.6040
((.(((..(........)..))).)	chr20:62299847-62300087(+)$1	1	143	168	15.0307
((((.((.(........).)).)))	chr7:157156481-157156746(+)$1	1	44	69	14.9672
(....((((........))))...)	chr15:72496026-72496293(-)$1	1	210	235	15.4908
.((((((((........)))).)))	chr9:127261002-127261221(-)$1	1	177	202	13.8356
((.(((.((........)).)))))	chr1:36787578-36787824(+)$1	1	44	69	15.8141
.((((.(.(........).).))))	chr10:111986485-111986751(+)$1	1	118	143	15.2473
(((((.(((........))).))))	chr9:140512685-140512990(-)$1	1	35	60	15.0576
(((((.(((........)))....)	chr1:19206700-19206986(-)$1	1	160	185	16.7145
...((((((........))))))..	chr16:28847496-28847746(+)$1	1	22	47	17.0034
...((.(((........))).))..	chr2:220150424-220150687(+)$1	1	63	88	17.0162
((.((((((........))))))))	chr11:70270961-70271222(+)$1	1	166	191	16.3281
((.((((((........)))))).)	chr21:16379085-16379426(-)$1	1	268	293	16.4406
(((...(((........))).....	chr3:52516813-52517110(+)$1	1	139	164	14.6010
(((((.(((........))).))))	chr9:95477237-95477482(-)$1	1	8	33	16.3734
(..((((((........))))))).	chr7:105559583-105559839(+)$1	1	144	169	16.5875
(.(((((((........)))))...	chr1:1559375-1559668(+)$1	1	30	55	14.8109
..((..(((........)))..)).	chr6:348998-349293(+)$1	1	68	93	15.9990
..(((((((........))))))).	chr3:149683579-149683840(-)$1	1	144	169	16.4476
(((((..((........))..))))	chr22:50209447-50209732(-)$1	1	96	121	14.7691
(((((((((........)))).)))	chr13:99055927-99056175(+)$1	1	53	78	14.2423

#PSSM
c : 0.16	e : 0.14	f : 0.09	" : 0.08	! : 0.06	d : 0.06	# : 0.06	b : 0.06	h : 0.04	[ : 0.04	g : 0.03	i : 0.03	a : 0.03	= : 0.03	: : 0.01	
c : 0.16	e : 0.14	! : 0.11	f : 0.11	d : 0.08	" : 0.08	# : 0.06	b : 0.04	h : 0.03	g : 0.03	i : 0.03	[ : 0.03	= : 0.03	a : 0.01	
e : 0.14	[ : 0.13	! : 0.11	# : 0.09	f : 0.09	d : 0.08	c : 0.08	g : 0.08	" : 0.06	= : 0.03	b : 0.03	i : 0.01	h : 0.01	
f : 0.26	c : 0.11	e : 0.09	d : 0.08	g : 0.08	b : 0.08	# : 0.06	! : 0.04	[ : 0.04	" : 0.03	= : 0.03	a : 0.01	i : 0.01	h : 0.01	
f : 0.24	e : 0.18	c : 0.14	d : 0.06	! : 0.06	g : 0.06	# : 0.04	b : 0.04	[ : 0.03	= : 0.03	a : 0.01	i : 0.01	h : 0.01	" : 0.01	
[ : 0.21	f : 0.21	c : 0.13	e : 0.09	d : 0.08	! : 0.06	g : 0.06	# : 0.03	= : 0.03	a : 0.01	i : 0.01	b : 0.01	" : 0.01	
c : 0.37	f : 0.21	e : 0.08	d : 0.08	[ : 0.06	g : 0.06	= : 0.03	! : 0.03	i : 0.01	b : 0.01	a : 0.01	
c : 0.32	f : 0.16	b : 0.13	[ : 0.11	e : 0.08	d : 0.06	g : 0.04	= : 0.03	i : 0.01	! : 0.01	
c : 0.32	f : 0.16	b : 0.13	a : 0.13	e : 0.08	d : 0.06	g : 0.04	= : 0.03	i : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.32	f : 0.16	b : 0.13	a : 0.13	e : 0.08	d : 0.06	g : 0.04	= : 0.03	i : 0.01	
c : 0.32	f : 0.18	b : 0.13	] : 0.09	e : 0.08	d : 0.06	g : 0.04	= : 0.03	i : 0.01	2 : 0.01	
c : 0.34	f : 0.19	] : 0.11	e : 0.08	d : 0.08	g : 0.06	= : 0.03	2 : 0.03	i : 0.01	b : 0.01	a : 0.01	
f : 0.22	] : 0.16	2 : 0.11	c : 0.09	e : 0.09	d : 0.08	g : 0.06	4 : 0.03	= : 0.03	3 : 0.01	a : 0.01	i : 0.01	b : 0.01	6 : 0.01	
f : 0.24	e : 0.14	c : 0.13	2 : 0.11	g : 0.06	b : 0.04	] : 0.04	3 : 0.03	4 : 0.03	d : 0.03	= : 0.03	a : 0.01	i : 0.01	h : 0.01	6 : 0.01	
f : 0.24	c : 0.14	e : 0.11	g : 0.08	d : 0.06	3 : 0.06	b : 0.06	] : 0.04	4 : 0.04	= : 0.03	a : 0.01	2 : 0.01	i : 0.01	h : 0.01	6 : 0.01	
c : 0.13	e : 0.13	3 : 0.09	f : 0.09	] : 0.08	d : 0.08	g : 0.08	4 : 0.06	5 : 0.03	b : 0.03	i : 0.03	= : 0.03	: : 0.01	A : 0.01	2 : 0.01	h : 0.01	6 : 0.01	a : 0.01	
c : 0.16	e : 0.13	f : 0.09	d : 0.08	3 : 0.08	5 : 0.04	] : 0.04	2 : 0.04	a : 0.03	h : 0.03	b : 0.03	g : 0.03	i : 0.03	4 : 0.03	= : 0.03	H : 0.01	: : 0.01	} : 0.01	6 : 0.01	

#score	963.0472524320163
#seq	61
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_UTR_m2_run2.txt

#BEAR
ggggggg$$$$$cccnnnnnccc4444gggggggcc	chr16:2508674-2508897(+)$1	223	135	171	11.7424
3bb]ddddgggggggoooooogggggggeeeee[bb	chr3:195776066-195776361(-)$1	295	110	146	12.5032
========[bb[cccnnnnncccbb]==========	chr12:72003438-72003733(-)$1	295	38	74	13.2519
dddd===========oooooo===========22dd	chr6:57033292-57033580(+)$1	288	230	266	16.5317
d[dddd[ffffffbboooooobb]ffffff]dddd]	chr12:76443453-76443662(-)$1	209	81	117	12.3181
======!!gggggggooooooggggggg========	chr1:197053267-197053590(-)$1	323	25	61	17.8083
hhh[ccc!!ffffffooooooffffff]ccc88888	chr14:53194243-53194499(+)$1	256	21	57	12.0713
=====$$$$$eeeeeooooooeeeee==========	chr11:77336691-77336964(-)$1	273	9	45	16.0459
!bb"""ccc!!ddddoooooodddd22ccc333bb2	chr3:112260549-112260832(-)$1	283	68	104	14.7345
fffccc[hhhhhhhhoooooohhhhhhhh]ccc333	chr21:35478150-35478455(+)$1	305	20	56	13.1342
ggggg!!dddd!!bboooooobb]dddd22gggggg	chr1:145442423-145442713(+)$1	290	68	104	14.1744
"ccc[eeeee"""bboooooobb]eeeee]ccc]bb	chr15:44821066-44821322(+)$1	256	46	82	13.3684
:==========ddddoooooodddd]==========	chr8:101930952-101931210(-)$1	258	132	168	16.4655
iiiiii$$$$$ddddooooooddddiiiiiiiiidd	chr16:10576051-10576334(+)$1	283	104	140	15.7472
hhhh!!iiiiiiiiiooooooiiiiiiiii]hhhhh	chr18:13124759-13125100(+)$1	341	16	52	15.0518
#bb[ccchhhhhhhhoooooohhhhhhhh4444ccc	chr4:68338103-68338419(-)$1	316	65	101	12.4752
iiiiiiii####cccooooooccc333iiiiiiiii	chr14:70238224-70238480(+)$1	256	125	161	17.5570
e"""bb!!gggggggooooooggggggg22bb6666	chr9:100777607-100777815(+)$1	208	13	49	13.6732
###bb"""ccc"""cccmmmmccc333ccc333bb3	chr17:7465253-7465525(+)$1	272	96	132	11.8332
dd[dddd!!ccc[bboooooobb]ccc22dddd]dd	chr20:3127083-3127427(-)$1	344	108	144	13.3827
!!dddd[bb!!ddddoooooodddd22bbdddd444	chr10:70525559-70525860(+)$1	301	122	158	13.4203
ffffff"""ggggggglllggggggg4444ffffff	chr10:70545839-70546076(+)$1	237	126	162	10.9410
==!!bb$$$$$ddddoooooodddd333bb22====	chr13:31035379-31035665(-)$1	286	155	191	14.7682
bb[bb[iiiiiiiiiooooooiiiiiiiii]bb]bb	chr3:112256890-112257128(-)$1	238	73	109	15.1916
===!!a!!eeeee[aooooooa]eeeee22a333==	chr1:42642158-42642448(-)$1	290	160	196	15.4458
ccc[ggggggg[ddddmmmmddddggggggg]cccc	chr15:69072327-69072582(-)$1	255	80	116	10.7939
cc[===========qqqqqqqq===========]cc	chr19:19101610-19101880(-)$1	270	79	115	11.6275
:==========ddddoooooodddd]==========	chr8:101930920-101931152(-)$1	232	74	110	16.4655
Edddd!!dddd[cccooooooccc]dddd]ddddee	chr19:14200024-14200274(-)$1	250	21	57	12.2503
a!!gggggggccc!!ammmma22ccc]ggggggg33	chr2:47387784-47388043(-)$1	259	131	167	11.5769
dddd####ccc[cccccclllccc]ccc]ccc333d	chr12:8929488-8929733(+)$1	245	60	96	12.0532
gggg[dddd[eeeeeooooooeeeee333ddddggg	chr1:70611237-70611618(-)$1	381	228	264	13.7168
ffffff"""ggggggglllggggggg4444ffffff	chr10:70545790-70546039(+)$1	249	175	211	10.9410
eeee$$$$$ffffffooooooffffff333eeeee3	chr1:59120466-59120739(-)$1	273	107	143	13.7070
gggg$$$$$iiiiiiiiillliiiiiiiiigggggg	chr12:6879239-6879484(+)$1	245	18	54	12.7088
ffffff[a[ffffffooooooffffff333a]ffff	chr4:6709697-6710060(-)$1	363	18	54	13.7077
:ccc!!ccca[ddddoooooodddd]a]ccc22ccc	chr14:53106738-53106999(-)$1	261	0	36	13.9375
iiiiiiii####cccooooooccc333iiiiiiiii	chr14:70238175-70238424(+)$1	249	174	210	17.5570
ee[bbccc"""ddddoooooodddd22ccc]bb]ee	chr1:59247128-59247426(-)$1	298	224	260	13.7720
+ccc[==========lll==========]ccc22ii	chr13:111544995-111545298(-)$1	303	181	217	12.8425
ddddeeeeebb[cccooooooccc]bb333eeeee]	chr20:52185116-52185375(-)$1	259	93	129	13.1498
iiiiii[iiiiiiiiiooooooiiiiiiiii88888	chr21:38887253-38887569(+)$1	316	236	272	14.1178
f:bb[===========nnnnn===========]bb:	chr3:160133982-160134251(+)$1	269	206	242	11.3261
dddd"""dddd!!bboooooobbdddd333dddd33	chr7:106840508-106840836(+)$1	328	197	233	14.2677
Fiiiiiiiii!!ddddnnnnndddd22iiiiiiiii	chr4:54325439-54325740(+)$1	301	153	189	12.4633
$$$dddd[ccc[cccooooooccc22ccc]dddd44	chr1:6948016-6948344(+)$1	328	115	151	14.1959
###ccc"""ffffffooooooffffffcccffffff	chr1:25568657-25568914(-)$1	257	85	121	14.1229
ggggg####ccc!!bbnnnnnbb22ccc4444gggg	chr12:104341411-104341673(+)$1	262	95	131	11.9713
iiiiii$$$$$ddddooooooddddiiiiiiiii::	chr12:69667921-69668192(+)$1	271	125	161	14.3189
!!ccc[bb[ffffffooooooffffff]bb]ccc22	chr5:134195197-134195491(+)$1	294	120	156	13.1740
c"""ccc[ccc!!cccmmmmccc]ccccccccc333	chr7:148514879-148515161(-)$1	282	76	112	11.8985
!ffffff[ccc!!bboooooobbcccffffff22cc	chr15:69072655-69072897(-)$1	242	133	169	13.3545
ddd####eeeee!!aooooooa22eeeee22dddd:	chr16:89350343-89350669(-)$1	326	38	74	11.8413

#otherMatches

#Seq PSSM
ccucacagggguguugugaggauuaaaugugaGGAG	chr16:2508674-2508897(+)$1	223	135	171	11.7424
UGUAAACAAAUGAUAUGUCCUUAUCAUUGUAUAAAA	chr3:195776066-195776361(-)$1	295	110	146	12.5032
UGUAACUGCCAUGGCCACAAGUCUGCUAGUUGCACU	chr12:72003438-72003733(-)$1	295	38	74	13.2519
UUAACUUUGAAUUUAUAUAUUUAGAUUUAAAGGAUU	chr6:57033292-57033580(+)$1	288	230	266	16.5317
UGUUUUUCCUUUUCAGUAUGAUGAAGAAGGUGAAGA	chr12:76443453-76443662(-)$1	209	81	117	12.3181
UUUUAACAGACUUAAGCCAGAUUGGGUUUUGAGAAG	chr1:197053267-197053590(-)$1	323	25	61	17.8083
UCAUGAAAGCAGUCAGAAAAGUGGCUGAUUCUAAGA	chr14:53194243-53194499(+)$1	256	21	57	12.0713
AAAUUAAAAUUGAAUUGCAAUAUUCAGAUUUUCAAU	chr11:77336691-77336964(-)$1	273	9	45	16.0459
CUUAAGUGAUUUUAAAUAUAAUUAAUUUCAAAGGAC	chr3:112260549-112260832(-)$1	283	68	104	14.7345
GAUUUAAGAUUGUUAAAAUCAUGACAAUUCUAACUU	chr21:35478150-35478455(+)$1	305	20	56	13.1342
AGAUGGUUGGUUUCAUGUUUUUGUAUUAUGUAUCUU	chr1:145442423-145442713(+)$1	290	68	104	14.1744
ucuuauuuacuaugcaguauagccgugaacaaguaa	chr15:44821066-44821322(+)$1	256	46	82	13.3684
CCAUUUUAAAAAAGguguauuuuuucuuuuagaaug	chr8:101930952-101931210(-)$1	258	132	168	16.4655
GCAAUGUUACUGUAAUACUAUUUGCCAUUGUAAAAG	chr16:10576051-10576334(+)$1	283	104	140	15.7472
UACAUUUUUGUGUAAAGUAAAUUACAUAAGUUGUAU	chr18:13124759-13125100(+)$1	341	16	52	15.0518
GUGUUCUUCUUUUUACUCAGAUAAAAAGAUGAAAGA	chr4:68338103-68338419(-)$1	316	65	101	12.4752
UGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAA	chr14:70238224-70238480(+)$1	256	125	161	17.5570
AAAGUCAAUUUUUGUUACUGUACagaggaggaagaa	chr9:100777607-100777815(+)$1	208	13	49	13.6732
gagguggAGGUGGAGGUGGAAGCUGAAGCUGAAGCA	chr17:7465253-7465525(+)$1	272	96	132	11.8332
GUGUGUUGAGGAGACUUAAUUGUAUCCAAGGCAGGU	chr20:3127083-3127427(-)$1	344	108	144	13.3827
AGCGUCGAGAAAGAAGAUAUAUUUUGCCUGAUGAAC	chr10:70525559-70525860(+)$1	301	122	158	13.4203
UAAAGAUAAGGUGUUUAUUGAAUACUGUAUUCUUUA	chr10:70545839-70546076(+)$1	237	126	162	10.9410
augaUGAUGAUGAAUAAGUUGGUUCUAGCGCAGUUU	chr13:31035379-31035665(-)$1	286	155	191	14.7682
UUAAUCUUUUGUUGUUUUUUUAUAACAGAAUAUGAA	chr3:112256890-112257128(-)$1	238	73	109	15.1916
AUUAGGAUUGUUGCUGCCAGAACUGAUAUGCAUGAA	chr1:42642158-42642448(-)$1	290	160	196	15.4458
GCCGCUUUCUUACUUUUCCAGAAGAAGAAAGGGGUC	chr15:69072327-69072582(-)$1	255	80	116	10.7939
UACAAAAUGGAAGUUUUCUUUUGUUUCUGUUUUUUA	chr19:19101610-19101880(-)$1	270	79	115	11.6275
CCAUUUUAAAAAAGguguauuuuuucuuuuagaaug	chr8:101930920-101931152(-)$1	232	74	110	16.4655
CCCCACCGCCCGGACGCCACAGUCAGGGUCUGGGAU	chr19:14200024-14200274(-)$1	250	21	57	12.2503
ACCUUGUACAGAAUGUGUUAAAUUUCUUGUACAAAA	chr2:47387784-47388043(-)$1	259	131	167	11.5769
GAGACAUUGUGAAAUCAAAUCUUGUGUUAUACUUUU	chr12:8929488-8929733(+)$1	245	60	96	12.0532
UGAUUAUUGUAAUUGAUCUUGUAGUUUCCCAGUAUC	chr1:70611237-70611618(-)$1	381	228	264	13.7168
UAAAGAUAAGGUGUUUAUUGAAUACUGUAUUCUUUA	chr10:70545790-70546039(+)$1	249	175	211	10.9410
UACAUUUAAAUAUGCCAUGUUGUAUAUGUCUGUAUU	chr1:59120466-59120739(-)$1	273	107	143	13.7070
GGCGACCACGGGGGCUCUGCCAGAGCUUCCUGCCCU	chr12:6879239-6879484(+)$1	245	18	54	12.7088
CUGAUUGUUUUUUGGAACACGUCAAGACGUGGGAUC	chr4:6709697-6710060(-)$1	363	18	54	13.7077
ccacucaaggagagucaucuaacuuccacuuucgug	chr14:53106738-53106999(-)$1	261	0	36	13.9375
UGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAA	chr14:70238175-70238424(+)$1	249	174	210	17.5570
AAAGCUGAUUACUGUCAAUAAACAGCUUCAUGCCUU	chr1:59247128-59247426(-)$1	298	224	260	13.7720
CUGCCAUGAAUUAGAUUUUUUAAUUUGUUGUAUCUG	chr13:111544995-111545298(-)$1	303	181	217	12.8425
CAAUGAUUUUGUAUUAUGUUGAAUCCACCCAAAUCU	chr20:52185116-52185375(-)$1	259	93	129	13.1498
ACUAUGCUUUUUUAAAAAUUAAUUUAAGAAAAAUGU	chr21:38887253-38887569(+)$1	316	236	272	14.1178
CAGAAAGAAAAAGAAGUAAGUUUUUUUUUUUUAUCA	chr3:160133982-160134251(+)$1	269	206	242	11.3261
GUUUAAAUCCUGACUGUUGGAAGAGGAAAAGAACCA	chr7:106840508-106840836(+)$1	328	197	233	14.2677
ACCGAAGCUACACCUGCAGAAUAGGCAUGGUUUUGG	chr4:54325439-54325740(+)$1	301	153	189	12.4633
gucaguuaccaccugucucaucagaauggaagcucc	chr1:6948016-6948344(+)$1	328	115	151	14.1959
UUGGUUAUGUAAAAAUGAAAUUUUUUAGACACAGUA	chr1:25568657-25568914(-)$1	257	85	121	14.1229
GAGAGACUUGUUUUGGAUGCCCCCUAAUCCCCUUCU	chr12:104341411-104341673(+)$1	262	95	131	11.9713
GUUUGAUAUAUGGCCAUUGUCGGCCUUAAACUGCAC	chr12:69667921-69668192(+)$1	271	125	161	14.3189
AGCUACUCGUGUGCAAUUAUGUGUAUGGGAAUGGAG	chr5:134195197-134195491(+)$1	294	120	156	13.1740
UUAAUGUGCUGGAAUCAAAGGAUACAGACAGUGAUA	chr7:148514879-148515161(-)$1	282	76	112	11.8985
GAAGAAGAGCUUGGUGGUAUGGCAGCCUUUUUACUC	chr15:69072655-69072897(-)$1	242	133	169	13.3545
CUCAAAAUUAGAGAAGAAGAAUGAUUUAAAAGAGGA	chr16:89350343-89350669(-)$1	326	38	74	11.8413

#DB
(((((((.....(((.....)))....)))))))))	chr16:2508674-2508897(+)$1	1	135	171	11.7424
.)).))))(((((((......)))))))(((((.((	chr3:195776066-195776361(-)$1	1	110	146	12.5032
((((((((.((.(((.....))))).))))))))))	chr12:72003438-72003733(-)$1	1	38	74	13.2519
(((((((((((((((......)))))))))))..))	chr6:57033292-57033580(+)$1	1	230	266	16.5317
(.((((.((((((((......)).)))))).)))).	chr12:76443453-76443662(-)$1	1	81	117	12.3181
((((((..(((((((......)))))))))))))))	chr1:197053267-197053590(-)$1	1	25	61	17.8083
(((.(((..((((((......)))))).))).....	chr14:53194243-53194499(+)$1	1	21	57	12.0713
(((((.....(((((......)))))))))))))))	chr11:77336691-77336964(-)$1	1	9	45	16.0459
.((...(((..((((......))))..)))...)).	chr3:112260549-112260832(-)$1	1	68	104	14.7345
((((((.((((((((......)))))))).)))...	chr21:35478150-35478455(+)$1	1	20	56	13.1342
(((((..((((..((......)).))))..))))))	chr1:145442423-145442713(+)$1	1	68	104	14.1744
.(((.(((((...((......)).))))).))).))	chr15:44821066-44821322(+)$1	1	46	82	13.3684
.((((((((((((((......)))).))))))))))	chr8:101930952-101931210(-)$1	1	132	168	16.4655
((((((.....((((......)))))))))))))))	chr16:10576051-10576334(+)$1	1	104	140	15.7472
((((..(((((((((......))))))))).)))))	chr18:13124759-13125100(+)$1	1	16	52	15.0518
.((.(((((((((((......))))))))....)))	chr4:68338103-68338419(-)$1	1	65	101	12.4752
((((((((....(((......)))...)))))))))	chr14:70238224-70238480(+)$1	1	125	161	17.5570
(...((..(((((((......)))))))..))....	chr9:100777607-100777815(+)$1	1	13	49	13.6732
...((...(((...(((....)))...)))...)).	chr17:7465253-7465525(+)$1	1	96	132	11.8332
((.((((..(((.((......)).)))..)))).))	chr20:3127083-3127427(-)$1	1	108	144	13.3827
..((((.((..((((......))))..))))))...	chr10:70525559-70525860(+)$1	1	122	158	13.4203
((((((...(((((((...)))))))....))))))	chr10:70545839-70546076(+)$1	1	126	162	10.9410
((..((.....((((......))))...))..))))	chr13:31035379-31035665(-)$1	1	155	191	14.7682
((.((.(((((((((......))))))))).)).))	chr3:112256890-112257128(-)$1	1	73	109	15.1916
(((..(..(((((.(......).)))))..)...))	chr1:42642158-42642448(-)$1	1	160	196	15.4458
(((.(((((((.((((....))))))))))).)))(	chr15:69072327-69072582(-)$1	1	80	116	10.7939
((.(((((((((((........))))))))))).))	chr19:19101610-19101880(-)$1	1	79	115	11.6275
.((((((((((((((......)))).))))))))))	chr8:101930920-101931152(-)$1	1	74	110	16.4655
(((((..((((.(((......))).)))).))))((	chr19:14200024-14200274(-)$1	1	21	57	12.2503
(..((((((((((..(....)..))).)))))))..	chr2:47387784-47388043(-)$1	1	131	167	11.5769
((((....(((.((((((...))).))).)))...)	chr12:8929488-8929733(+)$1	1	60	96	12.0532
((((.((((.(((((......)))))...)))))))	chr1:70611237-70611618(-)$1	1	228	264	13.7168
((((((...(((((((...)))))))....))))))	chr10:70545790-70546039(+)$1	1	175	211	10.9410
((((.....((((((......))))))...))))).	chr1:59120466-59120739(-)$1	1	107	143	13.7070
((((.....(((((((((...)))))))))))))))	chr12:6879239-6879484(+)$1	1	18	54	12.7088
((((((.(.((((((......))))))...).))))	chr4:6709697-6710060(-)$1	1	18	54	13.7077
.(((..((((.((((......)))).).)))..)))	chr14:53106738-53106999(-)$1	1	0	36	13.9375
((((((((....(((......)))...)))))))))	chr14:70238175-70238424(+)$1	1	174	210	17.5570
((.(((((...((((......))))..))).)).))	chr1:59247128-59247426(-)$1	1	224	260	13.7720
.(((.((((((((((...)))))))))).)))..))	chr13:111544995-111545298(-)$1	1	181	217	12.8425
(((((((((((.(((......))).))...))))).	chr20:52185116-52185375(-)$1	1	93	129	13.1498
((((((.(((((((((......))))))))).....	chr21:38887253-38887569(+)$1	1	236	272	14.1178
).((.(((((((((((.....))))))))))).)).	chr3:160133982-160134251(+)$1	1	206	242	11.3261
((((...((((..((......))))))...))))..	chr7:106840508-106840836(+)$1	1	197	233	14.2677
((((((((((..((((.....))))..)))))))))	chr4:54325439-54325740(+)$1	1	153	189	12.4633
...((((.(((.(((......)))..))).))))..	chr1:6948016-6948344(+)$1	1	115	151	14.1959
...(((...((((((......)))))))))))))))	chr1:25568657-25568914(-)$1	1	85	121	14.1229
(((((....(((..((.....))..)))....))))	chr12:104341411-104341673(+)$1	1	95	131	11.9713
((((((.....((((......)))))))))))))..	chr12:69667921-69668192(+)$1	1	125	161	14.3189
..(((.((.((((((......)))))).)).)))..	chr5:134195197-134195491(+)$1	1	120	156	13.1740
(...(((.(((..(((....))).)))))))))...	chr7:148514879-148515161(-)$1	1	76	112	11.8985
.((((((.(((..((......)))))))))))..))	chr15:69072655-69072897(-)$1	1	133	169	13.3545
(((....(((((..(......)..)))))..)))).	chr16:89350343-89350669(-)$1	1	38	74	11.8413

#PSSM
d : 0.13	g : 0.09	= : 0.09	f : 0.09	i : 0.09	! : 0.07	: : 0.05	# : 0.05	e : 0.05	c : 0.05	h : 0.03	3 : 0.01	" : 0.01	b : 0.01	E : 0.01	a : 0.01	+ : 0.01	F : 0.01	$ : 0.01	
= : 0.13	d : 0.13	i : 0.11	g : 0.09	f : 0.09	c : 0.09	b : 0.07	! : 0.05	h : 0.03	" : 0.03	# : 0.03	e : 0.03	[ : 0.01	: : 0.01	$ : 0.01	
d : 0.15	= : 0.11	i : 0.11	g : 0.09	f : 0.09	c : 0.09	b : 0.07	[ : 0.07	h : 0.03	" : 0.03	# : 0.03	! : 0.03	e : 0.01	$ : 0.01	
d : 0.16	g : 0.11	= : 0.11	c : 0.11	i : 0.11	b : 0.07	f : 0.07	[ : 0.05	" : 0.05	! : 0.03	] : 0.01	h : 0.01	e : 0.01	# : 0.01	
= : 0.13	d : 0.11	c : 0.11	i : 0.11	g : 0.09	b : 0.09	[ : 0.07	f : 0.07	! : 0.05	" : 0.03	# : 0.03	$ : 0.03	e : 0.01	
= : 0.15	d : 0.11	c : 0.11	i : 0.11	! : 0.07	f : 0.07	g : 0.05	$ : 0.05	" : 0.05	# : 0.05	e : 0.03	b : 0.03	[ : 0.03	a : 0.01	
= : 0.13	c : 0.11	$ : 0.11	[ : 0.09	! : 0.09	i : 0.09	" : 0.09	d : 0.07	g : 0.05	# : 0.05	e : 0.03	b : 0.01	f : 0.01	
$ : 0.13	= : 0.13	i : 0.11	d : 0.09	! : 0.09	" : 0.07	c : 0.05	e : 0.05	[ : 0.05	h : 0.03	b : 0.03	g : 0.03	# : 0.03	f : 0.01	a : 0.01	
$ : 0.13	c : 0.13	= : 0.11	g : 0.09	d : 0.07	e : 0.07	i : 0.07	" : 0.07	[ : 0.05	# : 0.05	! : 0.03	h : 0.03	f : 0.01	b : 0.01	
g : 0.13	c : 0.13	= : 0.11	f : 0.11	$ : 0.09	i : 0.09	d : 0.05	e : 0.05	b : 0.03	! : 0.03	h : 0.03	# : 0.03	[ : 0.01	a : 0.01	" : 0.01	
c : 0.15	g : 0.11	= : 0.11	f : 0.11	$ : 0.07	e : 0.07	i : 0.07	! : 0.05	d : 0.05	b : 0.03	h : 0.03	" : 0.03	# : 0.03	[ : 0.01	
d : 0.16	[ : 0.11	f : 0.11	g : 0.09	! : 0.09	= : 0.07	e : 0.07	i : 0.07	c : 0.05	h : 0.03	" : 0.03	# : 0.03	$ : 0.01	
d : 0.20	c : 0.16	f : 0.11	! : 0.11	g : 0.09	= : 0.07	i : 0.07	e : 0.05	h : 0.03	" : 0.03	[ : 0.01	
d : 0.20	c : 0.16	b : 0.11	g : 0.09	f : 0.09	= : 0.07	i : 0.07	! : 0.05	e : 0.03	h : 0.03	" : 0.01	[ : 0.01	
d : 0.20	c : 0.18	b : 0.13	g : 0.09	f : 0.09	i : 0.07	= : 0.05	e : 0.03	h : 0.03	a : 0.03	q : 0.01	! : 0.01	
o : 0.69	c : 0.05	n : 0.03	g : 0.03	d : 0.03	i : 0.03	q : 0.01	a : 0.01	l : 0.01	= : 0.01	b : 0.01	
o : 0.71	n : 0.09	l : 0.05	m : 0.05	c : 0.03	q : 0.01	i : 0.01	
o : 0.71	n : 0.09	m : 0.07	l : 0.05	q : 0.01	c : 0.01	i : 0.01	
o : 0.71	n : 0.09	m : 0.07	l : 0.07	q : 0.01	= : 0.01	
o : 0.71	n : 0.09	m : 0.07	g : 0.03	l : 0.03	q : 0.01	= : 0.01	
o : 0.71	c : 0.05	n : 0.05	g : 0.03	l : 0.03	m : 0.01	d : 0.01	q : 0.01	a : 0.01	= : 0.01	
d : 0.20	c : 0.18	b : 0.13	g : 0.09	f : 0.09	= : 0.05	i : 0.05	e : 0.03	h : 0.03	a : 0.03	q : 0.01	2 : 0.01	o : 0.01	
d : 0.20	c : 0.18	b : 0.13	g : 0.09	f : 0.09	= : 0.07	i : 0.07	e : 0.03	h : 0.03	2 : 0.03	] : 0.01	
d : 0.22	c : 0.16	g : 0.09	] : 0.09	f : 0.09	= : 0.07	i : 0.07	e : 0.05	h : 0.03	2 : 0.03	4 : 0.01	b : 0.01	
d : 0.22	g : 0.11	f : 0.11	e : 0.09	= : 0.07	i : 0.07	c : 0.07	3 : 0.05	] : 0.05	h : 0.03	2 : 0.03	4 : 0.01	b : 0.01	
g : 0.11	f : 0.11	i : 0.11	c : 0.11	e : 0.09	2 : 0.09	] : 0.07	= : 0.07	3 : 0.07	d : 0.05	h : 0.03	4 : 0.01	b : 0.01	
= : 0.15	f : 0.13	i : 0.11	3 : 0.09	c : 0.09	g : 0.07	2 : 0.07	4 : 0.05	d : 0.05	e : 0.05	h : 0.03	] : 0.01	a : 0.01	b : 0.01	
i : 0.16	= : 0.15	c : 0.15	g : 0.11	3 : 0.11	] : 0.05	e : 0.05	f : 0.03	h : 0.03	d : 0.03	4 : 0.03	2 : 0.01	b : 0.01	
i : 0.16	= : 0.15	c : 0.15	3 : 0.09	2 : 0.07	g : 0.05	e : 0.05	b : 0.05	4 : 0.05	f : 0.03	h : 0.03	] : 0.03	d : 0.01	
c : 0.16	i : 0.16	= : 0.15	] : 0.07	2 : 0.07	4 : 0.07	3 : 0.07	g : 0.05	d : 0.05	f : 0.03	b : 0.03	e : 0.01	
= : 0.15	c : 0.13	i : 0.11	d : 0.11	g : 0.09	] : 0.09	f : 0.07	e : 0.05	3 : 0.03	4 : 0.03	2 : 0.03	a : 0.03	b : 0.01	
= : 0.15	d : 0.15	c : 0.11	i : 0.09	g : 0.07	f : 0.07	e : 0.05	3 : 0.05	b : 0.05	8 : 0.03	4 : 0.03	2 : 0.03	] : 0.03	h : 0.01	
d : 0.15	= : 0.13	g : 0.09	c : 0.09	i : 0.09	2 : 0.07	3 : 0.07	f : 0.07	e : 0.05	8 : 0.03	b : 0.03	h : 0.01	4 : 0.01	6 : 0.01	] : 0.01	
g : 0.11	= : 0.11	d : 0.09	] : 0.09	i : 0.09	3 : 0.07	c : 0.07	f : 0.07	2 : 0.05	b : 0.05	8 : 0.03	e : 0.03	[ : 0.01	h : 0.01	6 : 0.01	4 : 0.01	
= : 0.13	c : 0.11	b : 0.11	d : 0.09	3 : 0.09	g : 0.07	i : 0.07	f : 0.07	e : 0.07	8 : 0.03	4 : 0.03	h : 0.01	6 : 0.01	: : 0.01	2 : 0.01	
= : 0.13	c : 0.11	3 : 0.11	d : 0.07	g : 0.07	i : 0.07	f : 0.07	b : 0.05	: : 0.05	] : 0.03	8 : 0.03	2 : 0.03	4 : 0.03	e : 0.03	h : 0.01	6 : 0.01	

#score	721.4990661246959
#seq	53
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_UTR_m1_run1.txt

#BEAR
eee[bb!!bb[bboooooobb]bb]bb]eee	chr16:68119393-68119671(+)$1	278	142	173	9.3904
e[==========annnnna]==========]	chr4:2070181-2070553(+)$1	372	186	217	13.8044
=======[ddddoooooodddd]========	chr16:89980273-89980503(+)$1	230	151	182	11.9407
g[ggggggg!!cccmmmmccc22ggggggg8	chr6:132199584-132199855(+)$1	271	67	98	10.2715
==========oooooo==========:ffff	chr3:5025399-5025693(+)$1	294	135	166	10.0645
dd"""bb[a[cccmmmmccca]bb333dddd	chr22:46751244-46751589(+)$1	345	192	223	10.1644
ddd####ffffffnnnnnffffff4444ddd	chr1:1822249-1822542(-)$1	293	43	74	10.6091
fffffccc[a[cccmmmmccc]a]ccc]fff	chr2:135208253-135208536(+)$1	283	189	220	9.5423
eeeee!!eeeee[aooooooa]eeeeeeeee	chr17:36884632-36884889(+)$1	257	104	135	8.3905
bbeeeee[a[cccnnnnnccc333a]eeeee	chr14:65569023-65569307(-)$1	284	23	54	10.9482
ddd!!bb####annnnna4444bb22dddd7	chr2:54197788-54198046(-)$1	258	32	63	9.1937
###==========qqqqqqqq==========	chr16:89980847-89981104(+)$1	257	43	74	8.7806
gggggggbb[cccnnnnnccc]bb666666g	chr2:38975944-38976216(-)$1	272	86	117	9.9141
a[ccc[a[bbccc"""bb!!==========a	chr12:56991292-56991567(-)$1	275	65	96	8.0814
!!bb[ccc"""bbnnnnnbb22ccc]bb22b	chr2:65658939-65659294(-)$1	355	66	97	9.1511
dd!!a[eeeeeooooooeeeee]a22dddd]	chr19:40596652-40596933(-)$1	281	189	220	8.6805
iiiiiiiiffffffmmmmffffff333iiii	chr4:23796985-23797252(-)$1	267	26	57	10.5776
cc!!a[gggggggnnnnnggggggg]a22cc	chr6:31638088-31638379(+)$1	291	171	202	11.5093
ff"""eeeee!!annnnna]eeeee4444ff	chr17:7127062-7127296(+)$1	234	123	154	10.4689
ggggggg[a[ddddllldddd]a333ggggg	chr20:61519858-61520121(-)$1	263	141	172	10.8718
[gggggggbb!!bbmmmmbb22bb]gggggg	chr6:31619917-31620248(-)$1	331	13	44	9.1138
b[ccc[a[bb[bbnnnnnbb]bbaccc]bb:	chr14:74759762-74760043(-)$1	281	104	135	8.6867
ggggggg[bbcccnnnnnccc]bb22ggggg	chr2:75787839-75788151(-)$1	312	115	146	12.8961
dddccc[a[bbcccmmmmccc]bb]a]ccc3	chr17:7142507-7142845(-)$1	338	89	120	9.5957
&ffffff"""cccnnnnnccc22ffffff77	chr3:49051298-49051599(+)$1	301	175	206	9.2368
ggggggg[ddddoooooodddd]gggggggE	chr6:349144-349423(+)$1	279	58	89	9.6266
"ccc[ccc[cccoooooocccccccccccc]	chr12:57499150-57499421(-)$1	271	45	76	11.3253
cc[a!!bb[a[aooooooa]a]bb22a]ccc	chr13:26828212-26828513(+)$1	301	150	181	11.9580
b[gggggggfffffflllffffff22ggggg	chrX:102933328-102933580(-)$1	252	81	112	9.6234
dffffff[dddd[aooooooa]ddddfffff	chr22:38902004-38902249(-)$1	245	120	151	8.3205
[a"""cccffffffmmmmffffff]ccc]a]	chr19:11664178-11664514(-)$1	336	181	212	9.1438
fffff####ddddnnnnndddd]ffffff22	chr17:7530780-7531109(-)$1	329	219	250	8.8140
cc$$$$$ffffffnnnnnffffff4444ccc	chr2:61697693-61697962(-)$1	269	129	160	10.5883
:ccc==========lll==========]ccc	chr16:23478541-23478844(-)$1	303	175	206	11.2773
[ccca[ffffffooooooffffff]a333cc	chr16:89981293-89981540(+)$1	247	183	214	11.3252
iiiiiiiii[cccnnnnnccciiiiiiiiib	chr9:117062804-117063053(+)$1	249	27	58	12.7825
==============mmmm=============	chr2:36777063-36777351(+)$1	288	128	159	12.4021
"cccdddd!!cccnnnnnccc22dddd]ccc	chr17:73975010-73975276(-)$1	266	123	154	10.2309
dd==========annnnna]==========4	chr9:138899055-138899277(-)$1	222	5	36	13.5320
ceeeeeffffffooooooffffff333eeee	chr17:79954214-79954484(+)$1	270	137	168	10.3445
gggggggeeeeeooooooeeeee333ggggg	chr19:15763262-15763536(+)$1	274	53	84	11.1633
##eeeeeccc[cccmmmmccc]ccc4444ee	chr20:34220613-34220899(-)$1	286	227	258	9.6843
[bbffffff[cccnnnnnccc22ffffff33	chr16:8891663-8891920(+)$1	257	31	62	10.4692
=============oooooo============	chr17:38334415-38334721(+)$1	306	40	71	13.7108
gggggggggggggmmmmggggggg4444ggg	chr9:138899077-138899307(-)$1	230	52	83	10.2467
======####cccpppppppccc333=====	chr14:70235844-70236083(+)$1	239	203	234	8.6904
$$$$$bb[bbrrrrrrrrrbb]bb22ggggg	chr12:69218291-69218542(+)$1	251	155	186	8.0511

#otherMatches

#Seq PSSM
ugccgccgccgccgccUGAGGAGGAGCUGCA	chr16:68119393-68119671(+)$1	278	142	173	9.3904
gcgugcgagugccuguguguguacuugcaua	chr4:2070181-2070553(+)$1	372	186	217	13.8044
gcauacguguguggguaaacauuuguaugug	chr16:89980273-89980503(+)$1	230	151	182	11.9407
CCUUAAAAAUAGUUUUAUAACCUUUUUUAGA	chr6:132199584-132199855(+)$1	271	67	98	10.2715
guguguaugugcgugugcgugcacaugugug	chr3:5025399-5025693(+)$1	294	135	166	10.0645
GACAAGAUGAUGGAGUGCCACUUCCGAUUCC	chr22:46751244-46751589(+)$1	345	192	223	10.1644
CUGGAGGCGUCUGAGGggcggacggaggcgg	chr1:1822249-1822542(-)$1	293	43	74	10.6091
CAGUAGGAGGGCAGAUGACUGGCAUCCUUGC	chr2:135208253-135208536(+)$1	283	189	220	9.5423
GUGGGUGAGCAUGUGGAGUUGGGUGUUCCCA	chr17:36884632-36884889(+)$1	257	104	135	8.3905
CGUGGCGGGGGCCGACCGGGCGUGCGUGCCG	chr14:65569023-65569307(-)$1	284	23	54	10.9482
GGCGACGAAGACGCGGAGGAGGCGGAGCCCg	chr2:54197788-54198046(-)$1	258	32	63	9.1937
ugugugugcgccugugugugggggugcacau	chr16:89980847-89981104(+)$1	257	43	74	8.7806
AUCUAGAUGCAGCGAUCGGCUAUAGAUACUU	chr2:38975944-38976216(-)$1	272	86	117	9.9141
AGAUGGAGGCCAGGUAGCAAUGGGGCCGGCC	chr12:56991292-56991567(-)$1	275	65	96	8.0814
CCCAAAUCAGGCGAUCUCCGGAGAUGUGAAG	chr2:65658939-65659294(-)$1	355	66	97	9.1511
UGACUGACCCGACAGUGCGGGUGGCCUAGGG	chr19:40596652-40596933(-)$1	281	189	220	8.6805
GAUAUCCAGUAAGCACAUGUUUAUUCAUGGG	chr4:23796985-23797252(-)$1	267	26	57	10.5776
AGACUGCUCAUCUCAGAAGGAUGGGGAUGCU	chr6:31638088-31638379(+)$1	291	171	202	11.5093
UUCAUGAAGGUACAGGACGGUCUUCUGCAGA	chr17:7127062-7127296(+)$1	234	123	154	10.4689
CUGUCUCAGCGGACCCUGUCCUCACGGAGAU	chr20:61519858-61520121(-)$1	263	141	172	10.8718
ACUAUCGGGGAAACGGAAGUGGCCGUCGGUG	chr6:31619917-31620248(-)$1	331	13	44	9.1138
GGAGCACAUGAGGACAGACCGCAGGCUGCAG	chr14:74759762-74760043(-)$1	281	104	135	8.6867
GGCUUGGCGCCGCCGUCCGUGAGCACCCAGG	chr2:75787839-75788151(-)$1	312	115	146	12.8961
AGGGAGGUGGCGGCAGCGGCUAGCGGACUCG	chr17:7142507-7142845(-)$1	338	89	120	9.5957
CGUCCCACCGGCUAGAUGAGUAUUGGGACCG	chr3:49051298-49051599(+)$1	301	175	206	9.2368
acgugcgugugugugagugcacuugugugug	chr6:349144-349423(+)$1	279	58	89	9.6266
AAGCCUGGUGGACAUUUAUUCCCAGCUACAG	chr12:57499150-57499421(-)$1	271	45	76	11.3253
GCGUGAGUGCGCGUGUGAGAGGACGAGAGCC	chr13:26828212-26828513(+)$1	301	150	181	11.9580
CAUCCCAGAAGAUCUAUAAGAUUUCAUCUGG	chrX:102933328-102933580(-)$1	252	81	112	9.6234
UGCGCCUGCCGCCGCCCCAACAGCGGAGGCG	chr22:38902004-38902249(-)$1	245	120	151	8.3205
GGGUGGCCGUGAGUGUGUGCUCACAGGUACG	chr19:11664178-11664514(-)$1	336	181	212	9.1438
CGGGUGAAGACUGCAGGCCGGUAACCCGGGG	chr17:7530780-7531109(-)$1	329	219	250	8.8140
CGAACGAUGUGCGAGAACUGCGCAGACCUGG	chr2:61697693-61697962(-)$1	269	129	160	10.5883
AGUGUGGGAAAUGCGAAGCAUUUCUCAUCAU	chr16:23478541-23478844(-)$1	303	175	206	11.2773
UCGCUGGUCCAGAAACACCUGGAUGGAAAGU	chr16:89981293-89981540(+)$1	247	183	214	11.3252
GGGUGAGGGAGCUGUGGGGGCCCUUUACCCA	chr9:117062804-117063053(+)$1	249	27	58	12.7825
gugugugugugugugugugCGCGCGCACGCA	chr2:36777063-36777351(+)$1	288	128	159	12.4021
UGAACCCGGACCUGCGCAGGGAGCGGGAUUC	chr17:73975010-73975276(-)$1	266	123	154	10.2309
gugcacgcgcgucugugugCACGUGCGUGUC	chr9:138899055-138899277(-)$1	222	5	36	13.5320
CAGCGUCGGCUGGCCAGGCAGCCGCCAGCGC	chr17:79954214-79954484(+)$1	270	137	168	10.3445
GCCCUCAGAGGUACUGUGACUUUUUAUGGGG	chr19:15763262-15763536(+)$1	274	53	84	11.1633
UUGUGUUUUGGGGUGGAGGCUGUGACUGUGA	chr20:34220613-34220899(-)$1	286	227	258	9.6843
CCUCGUGCCAACGUGUCUUGUAAGGUGCGGC	chr16:8891663-8891920(+)$1	257	31	62	10.4692
GGGGGAGGGGGGCCCCUGCGCUCCCCUUCCU	chr17:38334415-38334721(+)$1	306	40	71	13.7108
ugCACGUGCGUGUCUCUGCACGCgugucugu	chr9:138899077-138899307(-)$1	230	52	83	10.2467
AUUAAAAGUAGUUUUAAAUUAAUGGAUUUAA	chr14:70235844-70236083(+)$1	239	203	234	8.6904
UAUUUGACGCAUUCACACAGCUUUUUGAUAU	chr12:69218291-69218542(+)$1	251	155	186	8.0511

#DB
(((.((..((.((......)).)).)).)))	chr16:68119393-68119671(+)$1	1	142	173	9.3904
(.(((((((((((.....).)))))))))).	chr4:2070181-2070553(+)$1	1	186	217	13.8044
(((((((.((((......)))).))))))))	chr16:89980273-89980503(+)$1	1	151	182	11.9407
(.(((((((..(((....)))..))))))).	chr6:132199584-132199855(+)$1	1	67	98	10.2715
((((((((((......)))))))))).((((	chr3:5025399-5025693(+)$1	1	135	166	10.0645
((...((.(.(((....)))).))...))))	chr22:46751244-46751589(+)$1	1	192	223	10.1644
(((....((((((.....))))))....)))	chr1:1822249-1822542(-)$1	1	43	74	10.6091
((((((((.(.(((....))).).))).)))	chr2:135208253-135208536(+)$1	1	189	220	9.5423
(((((..(((((.(......).)))))))))	chr17:36884632-36884889(+)$1	1	104	135	8.3905
(((((((.(.(((.....)))...).)))))	chr14:65569023-65569307(-)$1	1	23	54	10.9482
(((..((....(.....)....))..)))).	chr2:54197788-54198046(-)$1	1	32	63	9.1937
...((((((((((........))))))))))	chr16:89980847-89981104(+)$1	1	43	74	8.7806
(((((((((.(((.....))).))......)	chr2:38975944-38976216(-)$1	1	86	117	9.9141
(.(((.(.(((((...((..(((((((((((	chr12:56991292-56991567(-)$1	1	65	96	8.0814
..((.(((...((.....))..))).))..)	chr2:65658939-65659294(-)$1	1	66	97	9.1511
((..(.(((((......))))).)..)))).	chr19:40596652-40596933(-)$1	1	189	220	8.6805
((((((((((((((....))))))...))))	chr4:23796985-23797252(-)$1	1	26	57	10.5776
((..(.(((((((.....))))))).)..))	chr6:31638088-31638379(+)$1	1	171	202	11.5093
((...(((((..(.....).)))))....))	chr17:7127062-7127296(+)$1	1	123	154	10.4689
(((((((.(.((((...)))).)...)))))	chr20:61519858-61520121(-)$1	1	141	172	10.8718
.(((((((((..((....))..)).))))))	chr6:31619917-31620248(-)$1	1	13	44	9.1138
(.(((.(.((.((.....)).)))))).)).	chr14:74759762-74760043(-)$1	1	104	135	8.6867
(((((((.(((((.....))).))..)))))	chr2:75787839-75788151(-)$1	1	115	146	12.8961
((((((.(.(((((....))).)).).))).	chr17:7142507-7142845(-)$1	1	89	120	9.5957
.((((((...(((.....)))..))))))..	chr3:49051298-49051599(+)$1	1	175	206	9.2368
(((((((.((((......)))).)))))))(	chr6:349144-349423(+)$1	1	58	89	9.6266
.(((.(((.(((......)))))))))))).	chr12:57499150-57499421(-)$1	1	45	76	11.3253
((.(..((.(.(......).).))..).)))	chr13:26828212-26828513(+)$1	1	150	181	11.9580
(.(((((((((((((...))))))..)))))	chrX:102933328-102933580(-)$1	1	81	112	9.6234
)((((((.((((.(......).)))))))))	chr22:38902004-38902249(-)$1	1	120	151	8.3205
.(...(((((((((....)))))).))).).	chr19:11664178-11664514(-)$1	1	181	212	9.1438
(((((....((((.....)))).))))))..	chr17:7530780-7531109(-)$1	1	219	250	8.8140
((.....((((((.....))))))....)))	chr2:61697693-61697962(-)$1	1	129	160	10.5883
.(((((((((((((...)))))))))).)))	chr16:23478541-23478844(-)$1	1	175	206	11.2773
.((((.((((((......)))))).)...))	chr16:89981293-89981540(+)$1	1	183	214	11.3252
(((((((((.(((.....))))))))))))(	chr9:117062804-117063053(+)$1	1	27	58	12.7825
((((((((((((((....)))))))))))))	chr2:36777063-36777351(+)$1	1	128	159	12.4021
.(((((((..(((.....)))..)))).)))	chr17:73975010-73975276(-)$1	1	123	154	10.2309
(((((((((((((.....).)))))))))).	chr9:138899055-138899277(-)$1	1	5	36	13.5320
)(((((((((((......))))))...))))	chr17:79954214-79954484(+)$1	1	137	168	10.3445
((((((((((((......)))))...)))))	chr19:15763262-15763536(+)$1	1	53	84	11.1633
..((((((((.(((....))).)))....))	chr20:34220613-34220899(-)$1	1	227	258	9.6843
.((((((((.(((.....)))..))))))..	chr16:8891663-8891920(+)$1	1	31	62	10.4692
(((((((((((((......))))))))))))	chr17:38334415-38334721(+)$1	1	40	71	13.7108
(((((((((((((....)))))))....)))	chr9:138899077-138899307(-)$1	1	52	83	10.2467
((((((....(((.......)))...)))))	chr14:70235844-70236083(+)$1	1	203	234	8.6904
.....((.((.........)).))..)))))	chr12:69218291-69218542(+)$1	1	155	186	8.0511

#PSSM
g : 0.14	d : 0.14	= : 0.10	c : 0.08	[ : 0.08	e : 0.06	f : 0.06	b : 0.06	# : 0.04	i : 0.04	" : 0.04	a : 0.02	! : 0.02	& : 0.02	: : 0.02	$ : 0.02	
g : 0.14	c : 0.14	d : 0.12	[ : 0.10	= : 0.10	f : 0.10	e : 0.06	b : 0.04	# : 0.04	i : 0.04	! : 0.02	a : 0.02	$ : 0.02	
g : 0.19	= : 0.14	c : 0.12	e : 0.10	f : 0.08	" : 0.06	d : 0.06	b : 0.04	! : 0.04	i : 0.04	$ : 0.04	# : 0.02	[ : 0.02	
g : 0.19	= : 0.17	c : 0.14	f : 0.10	e : 0.08	" : 0.06	! : 0.06	i : 0.04	$ : 0.04	[ : 0.02	# : 0.02	b : 0.02	a : 0.02	
= : 0.19	g : 0.19	f : 0.10	e : 0.08	" : 0.06	c : 0.06	a : 0.06	! : 0.04	[ : 0.04	i : 0.04	$ : 0.04	b : 0.02	# : 0.02	d : 0.02	
= : 0.19	g : 0.19	c : 0.10	[ : 0.10	b : 0.08	e : 0.08	f : 0.06	# : 0.04	! : 0.04	i : 0.04	$ : 0.02	d : 0.02	
g : 0.21	= : 0.17	f : 0.10	b : 0.08	c : 0.08	e : 0.08	# : 0.06	! : 0.04	a : 0.04	i : 0.04	[ : 0.02	$ : 0.02	d : 0.02	
[ : 0.21	= : 0.14	g : 0.10	f : 0.10	c : 0.10	e : 0.08	# : 0.06	b : 0.04	i : 0.04	! : 0.02	a : 0.02	" : 0.02	d : 0.02	
b : 0.14	= : 0.14	f : 0.14	g : 0.08	[ : 0.08	e : 0.08	d : 0.06	a : 0.06	# : 0.06	" : 0.04	i : 0.02	! : 0.02	c : 0.02	
b : 0.14	= : 0.14	f : 0.14	[ : 0.12	d : 0.08	e : 0.08	! : 0.04	a : 0.04	# : 0.04	" : 0.04	g : 0.04	c : 0.04	
c : 0.23	f : 0.14	= : 0.12	[ : 0.10	d : 0.10	! : 0.06	e : 0.06	g : 0.04	o : 0.02	# : 0.02	" : 0.02	b : 0.02	r : 0.02	
c : 0.31	f : 0.14	= : 0.12	d : 0.10	b : 0.06	o : 0.04	e : 0.04	a : 0.04	g : 0.04	! : 0.04	r : 0.02	
c : 0.29	o : 0.19	f : 0.10	b : 0.08	= : 0.08	a : 0.06	[ : 0.04	g : 0.04	d : 0.04	n : 0.02	r : 0.02	
n : 0.36	o : 0.23	c : 0.08	f : 0.06	m : 0.04	a : 0.04	= : 0.04	q : 0.02	" : 0.02	d : 0.02	b : 0.02	p : 0.02	r : 0.02	
n : 0.36	o : 0.27	m : 0.21	l : 0.04	q : 0.02	" : 0.02	f : 0.02	p : 0.02	r : 0.02	
n : 0.36	o : 0.27	m : 0.21	l : 0.06	q : 0.02	" : 0.02	p : 0.02	r : 0.02	
n : 0.36	o : 0.25	m : 0.21	l : 0.06	= : 0.02	q : 0.02	b : 0.02	p : 0.02	r : 0.02	
n : 0.34	o : 0.23	m : 0.17	= : 0.04	c : 0.02	a : 0.02	q : 0.02	b : 0.02	e : 0.02	d : 0.02	l : 0.02	g : 0.02	p : 0.02	r : 0.02	
c : 0.27	f : 0.14	o : 0.08	a : 0.08	d : 0.08	= : 0.06	b : 0.06	e : 0.04	g : 0.04	4 : 0.02	q : 0.02	! : 0.02	p : 0.02	r : 0.02	
c : 0.27	f : 0.14	b : 0.10	] : 0.08	d : 0.08	= : 0.08	o : 0.04	e : 0.04	g : 0.04	4 : 0.02	q : 0.02	! : 0.02	p : 0.02	
c : 0.27	= : 0.14	f : 0.14	d : 0.08	a : 0.08	e : 0.06	b : 0.04	2 : 0.04	g : 0.04	4 : 0.02	q : 0.02	] : 0.02	
] : 0.25	= : 0.17	f : 0.14	2 : 0.12	d : 0.06	e : 0.06	g : 0.04	c : 0.04	3 : 0.02	4 : 0.02	b : 0.02	i : 0.02	
b : 0.21	= : 0.17	f : 0.14	] : 0.08	2 : 0.08	c : 0.08	e : 0.06	a : 0.04	g : 0.04	3 : 0.02	d : 0.02	i : 0.02	
f : 0.21	b : 0.19	= : 0.19	g : 0.08	3 : 0.08	c : 0.06	e : 0.04	a : 0.04	d : 0.04	] : 0.02	i : 0.02	
= : 0.19	3 : 0.12	2 : 0.12	] : 0.10	c : 0.10	g : 0.06	4 : 0.06	f : 0.06	e : 0.04	d : 0.04	a : 0.02	6 : 0.02	i : 0.02	
= : 0.19	3 : 0.12	2 : 0.12	4 : 0.10	c : 0.08	g : 0.06	] : 0.06	f : 0.06	a : 0.04	d : 0.04	b : 0.02	e : 0.02	6 : 0.02	i : 0.02	
= : 0.19	g : 0.17	4 : 0.10	3 : 0.08	c : 0.08	f : 0.08	d : 0.06	b : 0.04	e : 0.04	a : 0.04	: : 0.02	6 : 0.02	] : 0.02	i : 0.02	
= : 0.17	g : 0.17	] : 0.12	f : 0.10	4 : 0.10	d : 0.06	e : 0.06	c : 0.06	i : 0.04	6 : 0.02	b : 0.02	2 : 0.02	3 : 0.02	
g : 0.19	= : 0.17	f : 0.12	c : 0.12	e : 0.08	d : 0.08	2 : 0.04	i : 0.04	4 : 0.04	6 : 0.02	b : 0.02	] : 0.02	3 : 0.02	
g : 0.19	= : 0.17	c : 0.17	e : 0.10	f : 0.08	d : 0.08	2 : 0.04	i : 0.04	6 : 0.02	b : 0.02	7 : 0.02	a : 0.02	3 : 0.02	
g : 0.17	c : 0.12	e : 0.10	= : 0.10	] : 0.08	f : 0.08	d : 0.04	7 : 0.04	b : 0.04	3 : 0.04	8 : 0.02	a : 0.02	i : 0.02	: : 0.02	E : 0.02	2 : 0.02	4 : 0.02	

#score	485.1966212007085
#seq	47
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_UTR_m1_run1.txt

#BEAR
eeeee[bbtttttttttttbb]ee	chr18:77690179-77690416(-)$1	237	189	213	18.7803
eeeeexxxxxxxxxxxxxxxeeee	chr2:61153921-61154200(+)$1	279	99	123	19.1510
DDddddvvvvvvvvvvvvvdddd:	chr11:6505682-6505981(+)$1	299	75	99	18.5418
g[dddd^^^^^^^^^^^^^^^^^^	chr2:32991435-32991698(+)$1	263	145	169	17.0001
DDddddvvvvvvvvvvvvvdddd:	chr11:6505586-6505882(+)$1	296	171	195	18.5418
b[ddddwwwwwwwwwwwwwwdddd	chr15:49517295-49517548(+)$1	253	83	107	21.8812
e[eeeeevvvvvvvvvvvvveeee	chr12:66250216-66250494(+)$1	278	99	123	21.8804
:ffffffuuuuuuuuuuuufffff	chr2:241318-241568(-)$1	250	79	103	19.8640
h[dddd^^^^^^^^^^^^^^^^^^	chr3:187897611-187897880(+)$1	269	175	199	16.8049
eeeeewwwwwwwwwwwwwweeeee	chr2:85547144-85547411(-)$1	267	180	204	21.4954
fffffwwwwwwwwwwwwwwfffff	chr11:116739512-116739781(-)$1	269	48	72	20.1956
::eeeeeuuuuuuuuuuuueeeee	chr11:12961541-12961761(+)$1	220	172	196	20.5323
b!!eeeeettttttttttteeeee	chr9:5785784-5786033(-)$1	249	76	100	19.8712
hhhhhhhuuuuuuuuuuuuhhhhh	chr10:124147010-124147315(+)$1	305	78	102	18.3975
###cccvvvvvvvvvvvvvccc]f	chr19:45912055-45912311(-)$1	256	205	229	21.3603
e[cccwwwwwwwwwwwwwwcccee	chrX:70754038-70754274(+)$1	236	25	49	21.7303
e[eeeeewwwwwwwwwwwwwweee	chr2:75883314-75883541(+)$1	227	172	196	21.7815
ccc[ddddtttttttttttddddc	chrX:47056923-47057174(+)$1	251	92	116	19.0384
gggyyyyyyyyyyyyyyyyggggg	chr2:71213567-71213820(-)$1	253	139	163	19.2733
:::eeeeettttttttttteeeee	chr17:15947965-15948204(-)$1	239	174	198	17.0199
effffffxxxxxxxxxxxxxxxff	chr17:55173073-55173339(+)$1	266	72	96	17.6103
e!!ddddtttttttttttdddd22	chr2:138725006-138725247(+)$1	241	200	224	18.9882
##bbxxxxxxxxxxxxxxxbb444	chr16:70191623-70191868(+)$1	245	16	40	17.6787
c!!ccc^^^^^^^^^^^^^^^^^^	chr7:141478155-141478364(+)$1	209	137	161	16.8726
d[eeeeeuuuuuuuuuuuueeeee	chr2:240908924-240909162(-)$1	238	5	29	22.4719
gggggwwwwwwwwwwwwwwggggg	chr1:91966694-91966948(+)$1	254	162	186	20.8065
!!ddddvvvvvvvvvvvvvddddg	chr15:48454940-48455204(-)$1	264	166	190	21.7991
##bbddddtttttttttttdddd]	chr2:71213839-71214084(-)$1	245	167	191	18.7516
eeeee[bbtttttttttttbb]ee	chr4:1386719-1386971(+)$1	252	98	122	18.7803
c[eeeeewwwwwwwwwwwwwweee	chr4:1386272-1386539(+)$1	267	165	189	21.8175
c[ccc^^^^^^^^^^^^^^^^^^^	chr2:240251-240553(-)$1	302	61	85	16.9077
:fffffftttttttttttffffff	chrX:47057164-47057428(+)$1	264	68	92	17.0633
h[ccc^^^^^^^^^^^^^^^^^^^	chr21:45937453-45937740(+)$1	287	160	184	16.6823
bba[cccuuuuuuuuuuuuccc]a	chr2:47140930-47141209(-)$1	279	183	207	21.4312
eeeeewwwwwwwwwwwwwweeeee	chr2:85547111-85547337(-)$1	226	106	130	21.4954
b!!dddduuuuuuuuuuuudddd2	chr13:50067961-50068206(+)$1	245	93	117	21.9087
c[eeeee^^^^^^^^^^^^^^^^^	chr11:12961209-12961555(+)$1	346	229	253	16.6204
e[cccxxxxxxxxxxxxxxxccce	chr11:118321290-118321599(+)$1	309	141	165	19.2360
gggggggvvvvvvvvvvvvvgggg	chr3:187898030-187898292(+)$1	262	1	25	20.6095
d[ddddwwwwwwwwwwwwwwdddd	chr12:57451282-57451539(-)$1	257	51	75	21.9241
:fffffftttttttttttffffff	chr16:70193520-70193762(+)$1	242	208	232	17.0633
b[ddddvvvvvvvvvvvvvdddd]	chr19:45911588-45911841(-)$1	253	81	105	21.7839
##ddddxxxxxxxxxxxxxxxddd	chr2:74093032-74093297(+)$1	265	76	100	19.1090
dccc[bbuuuuuuuuuuuubb]cc	chr1:55352268-55352513(-)$1	245	124	148	20.7586
ffffffxxxxxxxxxxxxxxxfff	chr2:136743223-136743497(+)$1	274	220	244	18.0056
d"""cccxxxxxxxxxxxxxxxcc	chr16:23584978-23585273(+)$1	295	89	113	18.2870
e[ddddwwwwwwwwwwwwwwdddd	chr2:85547617-85547885(-)$1	268	234	258	21.9569
gggggbbuuuuuuuuuuuubb]gg	chr17:62117715-62117975(-)$1	260	160	184	20.9045
ffffcccuuuuuuuuuuuuccc22	chr11:116740644-116740886(-)$1	242	2	26	21.1536
i[ddddvvvvvvvvvvvvvdddd]	chr2:239612-239864(-)$1	252	206	230	21.8533
h!!dddd^^^^^^^^^^^^^^^^^	chr17:66509024-66509284(+)$1	260	190	214	16.2635
:::eeeeettttttttttteeeee	chr2:74091132-74091402(+)$1	270	200	224	17.0199
ffffcccyyyyyyyyyyyyyyyyc	chr2:61153801-61154068(+)$1	267	74	98	19.5369
###ddddtttttttttttdddd33	chr2:74090070-74090309(+)$1	239	204	228	19.1504
ddddyyyyyyyyyyyyyyyydddd	chr20:30960186-30960433(+)$1	247	99	123	20.1715
gggggwwwwwwwwwwwwwwggggg	chr1:91966644-91966894(+)$1	250	212	236	20.8065
bba[cccuuuuuuuuuuuuccc]a	chr2:47140811-47141130(-)$1	319	104	128	21.4312
gggeeeeettttttttttteeeee	chr3:187896255-187896542(+)$1	287	17	41	19.6320
e[dddd^^^^^^^^^^^^^^^^^^	chr5:112228298-112228614(-)$1	316	39	63	16.9944
dddd[bbwwwwwwwwwwwwwwbb]	chr2:74092800-74093047(+)$1	247	206	230	19.8755
ddddyyyyyyyyyyyyyyyydddd	chr4:106159671-106159950(+)$1	279	142	166	20.1715
bbeeeeeuuuuuuuuuuuueeeee	chr3:187896807-187897072(+)$1	265	197	221	21.8171
[ffffffwwwwwwwwwwwwwwfff	chr2:71214997-71215273(-)$1	276	24	48	20.2057
eeeeewwwwwwwwwwwwwweeeee	chr10:124146475-124146709(+)$1	234	42	66	21.4954

#otherMatches

#Seq PSSM
guaagugauaaauuauuuuucucu	chr18:77690179-77690416(-)$1	237	189	213	18.7803
AUAUGUUCCAGUUAAAAUACCAUG	chr2:61153921-61154200(+)$1	279	99	123	19.1510
UCCUUGGGAAAUAUAAAUGCAAGU	chr11:6505682-6505981(+)$1	299	75	99	18.5418
ucaguggagcagucagaacauaca	chr2:32991435-32991698(+)$1	263	145	169	17.0001
UCCUUGGGAAAUAUAAAUGCAAGU	chr11:6505586-6505882(+)$1	296	171	195	18.5418
auccugucuuuuucuuuaauuagg	chr15:49517295-49517548(+)$1	253	83	107	21.8812
GUUCUGAUAAAUCUCUUCCUUCAG	chr12:66250216-66250494(+)$1	278	99	123	21.8804
ugagaaaauuuucugcuucuuucu	chr2:241318-241568(-)$1	250	79	103	19.8640
GAUUUGAUUUACUAAUUAAUUUCA	chr3:187897611-187897880(+)$1	269	175	199	16.8049
GGCUGUGCCCUCGACUUUCCAGCU	chr2:85547144-85547411(-)$1	267	180	204	21.4954
GUCUACCUUCUUUCUUCUUUAGAC	chr11:116739512-116739781(-)$1	269	48	72	20.1956
CAAGGACUUAUUCACACAUGUUCU	chr11:12961541-12961761(+)$1	220	172	196	20.5323
GUAAGGUGUAUCACAGCAGUACCU	chr9:5785784-5786033(-)$1	249	76	100	19.8712
gaacaguucauuauuuuucacugu	chr10:124147010-124147315(+)$1	305	78	102	18.3975
UUUGCCUCUUUCUCUUUUUGGUCG	chr19:45912055-45912311(-)$1	256	205	229	21.3603
GUCUGCCAUCCCCAUUCUUCAGCC	chrX:70754038-70754274(+)$1	236	25	49	21.7303
GCAACUCUCAGCCUAUCCAUUGAG	chr2:75883314-75883541(+)$1	227	172	196	21.7815
CAGCAGGCUUUAUUguucugucuc	chrX:47056923-47057174(+)$1	251	92	116	19.0384
gucuaccuuaacaucucuugauuu	chr2:71213567-71213820(-)$1	253	139	163	19.2733
AACGAGGGCAUUGAUCUUAUCCUC	chr17:15947965-15948204(-)$1	239	174	198	17.0199
GAUUGCCAUUUCAUACUUUUUGGG	chr17:55173073-55173339(+)$1	266	72	96	17.6103
cuuugguaaucauucuucaccacu	chr2:138725006-138725247(+)$1	241	200	224	18.9882
CUGCUAUGGAAACAAUGCUGCUUU	chr16:70191623-70191868(+)$1	245	16	40	17.6787
UUCGGUUAUUCUAUUUCUCUGCUA	chr7:141478155-141478364(+)$1	209	137	161	16.8726
agagauuagaugucgaagaggucu	chr2:240908924-240909162(-)$1	238	5	29	22.4719
AAAGGUUUUCUCCCUCAGUUCUUU	chr1:91966694-91966948(+)$1	254	162	186	20.8065
cagaacauuuauugauuaaguucg	chr15:48454940-48455204(-)$1	264	166	190	21.7991
uagaguugaccuccagccccaaca	chr2:71213839-71214084(-)$1	245	167	191	18.7516
guccauguucucuucccccacuug	chr4:1386719-1386971(+)$1	252	98	122	18.7803
cucagucucuuuuuagcuucugac	chr4:1386272-1386539(+)$1	267	165	189	21.8175
gagcuaaauaccucaucuuaccug	chr2:240251-240553(-)$1	302	61	85	16.9077
ugagugaauuuuuuuccaucacuu	chrX:47057164-47057428(+)$1	264	68	92	17.0633
CUGUGGACAUCACUCGCCUUCAGA	chr21:45937453-45937740(+)$1	287	160	184	16.6823
CCUGUCCUGGAAGGAAGUUGGAGA	chr2:47140930-47141209(-)$1	279	183	207	21.4312
GGCUGUGCCCUCGACUUUCCAGCU	chr2:85547111-85547337(-)$1	226	106	130	21.4954
uuaagaguccauuuucauccuuug	chr13:50067961-50068206(+)$1	245	93	117	21.9087
GUCUGUCUUUUGUCCUUCAUUCUG	chr11:12961209-12961555(+)$1	346	229	253	16.6204
UUCAAAUAAUCAUUGUUCUCUUGA	chr11:118321290-118321599(+)$1	309	141	165	19.2360
GUGGGCAGAAUCCCUCACCGUGCC	chr3:187898030-187898292(+)$1	262	1	25	20.6095
UCCACCGUGUUUAGACUUGAGGUG	chr12:57451282-57451539(-)$1	257	51	75	21.9241
AAGGAGGGACAACCACAGCCUCCU	chr16:70193520-70193762(+)$1	242	208	232	17.0633
CUCCUUUUUCUUCUUCCCUGAGGU	chr19:45911588-45911841(-)$1	253	81	105	21.7839
AAGAAAUUACAUCAUCUCUAUUUU	chr2:74093032-74093297(+)$1	265	76	100	19.1090
GGGGAACAGAACAGGCAAAGUGCC	chr1:55352268-55352513(-)$1	245	124	148	20.7586
ACAGCCCUUUCAACUCCGCUCGGC	chr2:136743223-136743497(+)$1	274	220	244	18.0056
CUCUUACUCUUACUUUAACCAUGU	chr16:23584978-23585273(+)$1	295	89	113	18.2870
UUCGGUCACCUAAAUUCCUAACUG	chr2:85547617-85547885(-)$1	268	234	258	21.9569
GGGGACCUUUGGAUUGUACGGCUU	chr17:62117715-62117975(-)$1	260	160	184	20.9045
AGAAGACUACCCAGAAAAUGUCAU	chr11:116740644-116740886(-)$1	242	2	26	21.1536
GUUAaguuuuagcucuucuuuugu	chr2:239612-239864(-)$1	252	206	230	21.8533
GUCGGGCUCCUGAAUUUCCUCUUG	chr17:66509024-66509284(+)$1	260	190	214	16.2635
ACCUAAGAAUUGUGAGCUCUCUUA	chr2:74091132-74091402(+)$1	270	200	224	17.0199
GUAUUGUAUUCUUUUUCUCCAUCA	chr2:61153801-61154068(+)$1	267	74	98	19.5369
UUUGGCUGAGGAUAAUGAAGCCUU	chr2:74090070-74090309(+)$1	239	204	228	19.1504
cuguauuuuauuaauuacccacag	chr20:30960186-30960433(+)$1	247	99	123	20.1715
AAAGGUUUUCUCCCUCAGUUCUUU	chr1:91966644-91966894(+)$1	250	212	236	20.8065
CCUGUCCUGGAAGGAAGUUGGAGA	chr2:47140811-47141130(-)$1	319	104	128	21.4312
gauacguucucauucucccaaugu	chr3:187896255-187896542(+)$1	287	17	41	19.6320
GUGAGAUUUCUUCCCCCUAUGACU	chr5:112228298-112228614(-)$1	316	39	63	16.9944
UCUGGUCUACCUUGAUGUUCUGAG	chr2:74092800-74093047(+)$1	247	206	230	19.8755
uugcuacaucucccucaucugcag	chr4:106159671-106159950(+)$1	279	142	166	20.1715
GUGAAGAGCAUGCAUGGAAUCUUC	chr3:187896807-187897072(+)$1	265	197	221	21.8171
CACUGUUUGCCUUAAUACCCUGAC	chr2:71214997-71215273(-)$1	276	24	48	20.2057
uacccacuuaaugucuauagggug	chr10:124146475-124146709(+)$1	234	42	66	21.4954

#DB
(((((.((...........)).))	chr18:77690179-77690416(-)$1	1	189	213	18.7803
(((((...............))))	chr2:61153921-61154200(+)$1	1	99	123	19.1510
((((((.............)))).	chr11:6505682-6505981(+)$1	1	75	99	18.5418
(.((((..................	chr2:32991435-32991698(+)$1	1	145	169	17.0001
((((((.............)))).	chr11:6505586-6505882(+)$1	1	171	195	18.5418
(.((((..............))))	chr15:49517295-49517548(+)$1	1	83	107	21.8812
(.(((((.............))))	chr12:66250216-66250494(+)$1	1	99	123	21.8804
.((((((............)))))	chr2:241318-241568(-)$1	1	79	103	19.8640
(.((((..................	chr3:187897611-187897880(+)$1	1	175	199	16.8049
(((((..............)))))	chr2:85547144-85547411(-)$1	1	180	204	21.4954
(((((..............)))))	chr11:116739512-116739781(-)$1	1	48	72	20.1956
..(((((............)))))	chr11:12961541-12961761(+)$1	1	172	196	20.5323
(..(((((...........)))))	chr9:5785784-5786033(-)$1	1	76	100	19.8712
(((((((............)))))	chr10:124147010-124147315(+)$1	1	78	102	18.3975
...(((.............))).)	chr19:45912055-45912311(-)$1	1	205	229	21.3603
(.(((..............)))))	chrX:70754038-70754274(+)$1	1	25	49	21.7303
(.(((((..............)))	chr2:75883314-75883541(+)$1	1	172	196	21.7815
(((.((((...........)))))	chrX:47056923-47057174(+)$1	1	92	116	19.0384
(((................)))))	chr2:71213567-71213820(-)$1	1	139	163	19.2733
...(((((...........)))))	chr17:15947965-15948204(-)$1	1	174	198	17.0199
)((((((...............))	chr17:55173073-55173339(+)$1	1	72	96	17.6103
(..((((...........))))..	chr2:138725006-138725247(+)$1	1	200	224	18.9882
..((...............))...	chr16:70191623-70191868(+)$1	1	16	40	17.6787
(..(((..................	chr7:141478155-141478364(+)$1	1	137	161	16.8726
(.(((((............)))))	chr2:240908924-240909162(-)$1	1	5	29	22.4719
(((((..............)))))	chr1:91966694-91966948(+)$1	1	162	186	20.8065
..((((.............)))))	chr15:48454940-48455204(-)$1	1	166	190	21.7991
..((((((...........)))).	chr2:71213839-71214084(-)$1	1	167	191	18.7516
(((((.((...........)).))	chr4:1386719-1386971(+)$1	1	98	122	18.7803
(.(((((..............)))	chr4:1386272-1386539(+)$1	1	165	189	21.8175
(.(((...................	chr2:240251-240553(-)$1	1	61	85	16.9077
.((((((...........))))))	chrX:47057164-47057428(+)$1	1	68	92	17.0633
(.(((...................	chr21:45937453-45937740(+)$1	1	160	184	16.6823
(((.(((............))).)	chr2:47140930-47141209(-)$1	1	183	207	21.4312
(((((..............)))))	chr2:85547111-85547337(-)$1	1	106	130	21.4954
(..((((............)))).	chr13:50067961-50068206(+)$1	1	93	117	21.9087
(.(((((.................	chr11:12961209-12961555(+)$1	1	229	253	16.6204
(.(((...............))))	chr11:118321290-118321599(+)$1	1	141	165	19.2360
(((((((.............))))	chr3:187898030-187898292(+)$1	1	1	25	20.6095
(.((((..............))))	chr12:57451282-57451539(-)$1	1	51	75	21.9241
.((((((...........))))))	chr16:70193520-70193762(+)$1	1	208	232	17.0633
(.((((.............)))).	chr19:45911588-45911841(-)$1	1	81	105	21.7839
..((((...............)))	chr2:74093032-74093297(+)$1	1	76	100	19.1090
((((.((............)).))	chr1:55352268-55352513(-)$1	1	124	148	20.7586
((((((...............)))	chr2:136743223-136743497(+)$1	1	220	244	18.0056
(...(((...............))	chr16:23584978-23585273(+)$1	1	89	113	18.2870
(.((((..............))))	chr2:85547617-85547885(-)$1	1	234	258	21.9569
(((((((............)).))	chr17:62117715-62117975(-)$1	1	160	184	20.9045
(((((((............)))..	chr11:116740644-116740886(-)$1	1	2	26	21.1536
(.((((.............)))).	chr2:239612-239864(-)$1	1	206	230	21.8533
(..((((.................	chr17:66509024-66509284(+)$1	1	190	214	16.2635
...(((((...........)))))	chr2:74091132-74091402(+)$1	1	200	224	17.0199
(((((((................)	chr2:61153801-61154068(+)$1	1	74	98	19.5369
...((((...........))))..	chr2:74090070-74090309(+)$1	1	204	228	19.1504
((((................))))	chr20:30960186-30960433(+)$1	1	99	123	20.1715
(((((..............)))))	chr1:91966644-91966894(+)$1	1	212	236	20.8065
(((.(((............))).)	chr2:47140811-47141130(-)$1	1	104	128	21.4312
((((((((...........)))))	chr3:187896255-187896542(+)$1	1	17	41	19.6320
(.((((..................	chr5:112228298-112228614(-)$1	1	39	63	16.9944
((((.((..............)).	chr2:74092800-74093047(+)$1	1	206	230	19.8755
((((................))))	chr4:106159671-106159950(+)$1	1	142	166	20.1715
(((((((............)))))	chr3:187896807-187897072(+)$1	1	197	221	21.8171
.((((((..............)))	chr2:71214997-71215273(-)$1	1	24	48	20.2057
(((((..............)))))	chr10:124146475-124146709(+)$1	1	42	66	21.4954

#PSSM
e : 0.21	g : 0.10	b : 0.10	d : 0.10	: : 0.09	# : 0.07	c : 0.07	h : 0.06	f : 0.06	D : 0.03	! : 0.01	i : 0.01	[ : 0.01	
[ : 0.26	f : 0.14	e : 0.09	! : 0.09	g : 0.09	# : 0.07	: : 0.04	b : 0.04	d : 0.04	D : 0.03	c : 0.03	h : 0.01	" : 0.01	
d : 0.23	e : 0.20	f : 0.14	c : 0.09	g : 0.09	! : 0.07	# : 0.03	: : 0.03	b : 0.03	a : 0.03	h : 0.01	" : 0.01	
d : 0.29	e : 0.26	f : 0.14	c : 0.10	g : 0.06	[ : 0.04	b : 0.03	h : 0.01	y : 0.01	" : 0.01	
d : 0.28	e : 0.26	c : 0.17	f : 0.10	g : 0.06	y : 0.04	[ : 0.03	h : 0.01	x : 0.01	
d : 0.28	e : 0.17	w : 0.10	c : 0.10	f : 0.09	x : 0.04	y : 0.04	b : 0.04	[ : 0.03	^ : 0.03	h : 0.01	g : 0.01	
e : 0.17	w : 0.15	v : 0.09	^ : 0.09	d : 0.09	b : 0.07	x : 0.07	f : 0.07	c : 0.07	y : 0.04	h : 0.01	g : 0.01	
w : 0.21	u : 0.17	v : 0.12	^ : 0.12	x : 0.10	e : 0.06	y : 0.06	t : 0.06	b : 0.03	d : 0.03	
w : 0.21	t : 0.18	u : 0.17	v : 0.12	^ : 0.12	x : 0.10	y : 0.06	
w : 0.21	t : 0.18	u : 0.17	v : 0.12	^ : 0.12	x : 0.10	y : 0.06	
w : 0.21	t : 0.18	u : 0.17	v : 0.12	^ : 0.12	x : 0.10	y : 0.06	
w : 0.21	t : 0.18	u : 0.17	v : 0.12	^ : 0.12	x : 0.10	y : 0.06	
w : 0.21	t : 0.18	u : 0.17	v : 0.12	^ : 0.12	x : 0.10	y : 0.06	
w : 0.21	t : 0.18	u : 0.17	v : 0.12	^ : 0.12	x : 0.10	y : 0.06	
w : 0.21	t : 0.18	u : 0.17	v : 0.12	^ : 0.12	x : 0.10	y : 0.06	
w : 0.21	t : 0.18	u : 0.17	v : 0.12	^ : 0.12	x : 0.10	y : 0.06	
w : 0.21	t : 0.18	u : 0.17	v : 0.12	^ : 0.12	x : 0.10	y : 0.06	
w : 0.21	t : 0.18	u : 0.17	v : 0.12	^ : 0.12	x : 0.10	y : 0.06	
w : 0.21	u : 0.17	t : 0.12	v : 0.12	^ : 0.12	x : 0.10	y : 0.06	d : 0.03	f : 0.03	
d : 0.15	e : 0.15	^ : 0.12	w : 0.10	x : 0.09	b : 0.07	c : 0.07	f : 0.06	g : 0.04	y : 0.04	v : 0.03	h : 0.01	
d : 0.23	e : 0.18	^ : 0.12	c : 0.09	b : 0.07	f : 0.06	w : 0.06	g : 0.06	x : 0.06	h : 0.01	y : 0.01	
d : 0.25	e : 0.21	^ : 0.12	f : 0.09	c : 0.09	] : 0.06	g : 0.06	x : 0.03	h : 0.01	4 : 0.01	y : 0.01	b : 0.01	
e : 0.26	d : 0.21	^ : 0.12	f : 0.10	g : 0.07	] : 0.04	c : 0.04	2 : 0.03	h : 0.01	4 : 0.01	y : 0.01	3 : 0.01	b : 0.01	
e : 0.28	^ : 0.12	f : 0.12	d : 0.09	g : 0.09	c : 0.06	] : 0.06	2 : 0.04	: : 0.03	a : 0.03	h : 0.01	4 : 0.01	3 : 0.01	

#score	1258.0469273962376
#seq	64
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_CDS_m1_run1.txt

#BEAR
c!!eeeee[bb!!cccnnnnnccc333bb]eeeee]c	chr17:27445294-27445497(-)$1	203	59	96	13.3025
hhh!!dddd"""ddddoooooodddd333dddd22hh	chr17:73486251-73486525(+)$1	274	111	148	16.0310
!===============nnnnn===============2	chr6:31504302-31504547(-)$1	245	91	128	15.5529
gg[ggggggg"""cccoooooocccggggggg]gggg	chr17:79968641-79968844(+)$1	203	136	173	18.5245
h[ccc[ccc"""ddddoooooodddd]cccccchhhh	chr17:58150429-58150693(-)$1	264	139	176	16.9874
gg!!===========aooooooa]===========gg	chr19:45871795-45872093(-)$1	298	33	70	18.9705
f!!ddddiiiiiiiiiooooooiiiiiiiii]dddd5	chr12:133215773-133215985(-)$1	212	117	154	15.2689
ffffff[bb####cccooooooccc333bb]ffffff	chr3:188477878-188478187(+)$1	309	239	276	16.6048
cccggggggg"""ddddllldddd333ggggggg333	chr11:992538-992816(+)$1	278	58	95	14.3625
ddd!!dddd####cccoooooocccdddd22ddddbb	chr3:183910788-183911022(+)$1	234	50	87	15.4761
eeee==========[aooooooa]==========:gg	chr13:100741281-100741540(+)$1	259	121	158	17.1332
eeee####ccc!!ddddllldddd333ccc4444eee	chr2:97847402-97847630(+)$1	228	55	92	12.8884
iiii####ccc[ddddnnnnndddd]ccc22iiiiii	chr7:100159863-100160086(+)$1	223	119	156	13.9579
ee[bb[ccc!!a[a[aooooooa]a]a]ccc]bb]ee	chr3:38167215-38167458(-)$1	243	175	212	16.7437
============[cccnnnnnccc]============	chr16:57490740-57491002(+)$1	262	79	116	16.3331
"""ccc[ccc"""cccqqqqqqqqccc333ccc]ccc	chr2:61330887-61331222(+)$1	335	41	78	12.9969
$$$ggggggg!!ddddooooooddddgggggggdddd	chr3:58094804-58095020(+)$1	216	177	214	16.2248
dda[bb[ccc!!ddddoooooodddd]ccc333bb]a	chr6:30632832-30633128(-)$1	296	225	262	16.1989
ddccc!!eeeee[ccc[aooooooa]ccceeeee22c	chr12:120616565-120616797(-)$1	232	156	193	12.9612
eee[bb[ffffffcccooooooccc333ffffff]bb	chr10:13653514-13653785(+)$1	271	120	157	15.2545
:iiiiiiiii!!cccaooooooa]ccc]iiiiiiiii	chr6:167344429-167344703(-)$1	274	208	245	17.8210
gggdddd####a[cccooooooccc]a333dddd555	chr14:65197680-65197988(+)$1	308	150	187	15.7082
bb[bb[ffffff[cccoooooocccffffffbbbbhh	chr7:107641907-107642178(-)$1	271	156	193	13.4472
e===========[cccooooooccc]===========	chr2:122125291-122125508(-)$1	217	118	155	20.0643
###bbggggggg[cccooooooccc22ggggggg]bb	chr17:74401496-74401750(-)$1	254	162	199	17.1442
###ddddiiiiiiiiiooooooiiiiiiiii]dddd3	chr11:830568-830817(+)$1	249	203	240	16.1472
bbccc[ccc!!cccbboooooobb22ccc]ccc]ccc	chr20:61595479-61595687(+)$1	208	20	57	15.7153
iiiiiiii!!bb[bboooooobb]bb22iiiiiiiii	chr21:45744667-45744925(+)$1	258	117	154	15.1703
d[abb[ccc[bb!!bboooooobbbbccc]bb333a]	chr13:113741443-113741844(+)$1	401	150	187	14.3946
iiiiiiii"""ccc[aooooooaccc22iiiiiiiii	chr1:21939556-21939808(-)$1	252	11	48	18.8012
==========!!eeeeennnnneeeee==========	chr17:79684712-79684994(+)$1	282	147	184	14.3625
eeeee[ccc####ccclllccc4444ccc]eeeeeee	chr1:70705020-70705304(+)$1	284	43	80	12.9329
ddd"""eeeee[ddddoooooodddd]eeeeeddddc	chr21:47414018-47414244(+)$1	226	113	150	14.2937
[ddddccc[a!!ddddoooooodddd22a]ccc333d	chr5:73076399-73076676(+)$1	277	139	176	16.9113
!!dddd!!ccc!!cccooooooccc]ccc333dddd]	chr10:104181791-104182038(+)$1	247	39	76	17.9162
iiiiiii####eeeeeooooooeeeee4444iiiiii	chr4:123854509-123854751(+)$1	242	133	170	17.2827
a"""ccc"""ffffffooooooffffff333ccca]c	chr2:191791925-191792235(+)$1	310	124	161	15.5415
======="""bb[cccnnnnnccc22bb333======	chr15:57355845-57356122(+)$1	277	182	219	15.0669
%%%%ccc[bb"""cccooooooccc333bbccc]ccc	chr1:205496827-205497075(+)$1	248	127	164	16.0740
cciiiiiiiii[ddddoooooodddd22iiiiiiiii	chr19:35540113-35540395(+)$1	282	111	148	18.0591
$$$ggggggg[a[cccooooooccc]a333ggggggg	chr17:16978926-16979195(+)$1	269	136	173	18.7660
fffff"""bb[eeeeeooooooeeeeebb]ffffff]	chr6:30520254-30520538(-)$1	284	28	65	13.2406
cc"""ccc"""eeeeeooooooeeeee333cccccc:	chr10:113923358-113923623(-)$1	265	49	86	15.8535
ccceeeee[ddddcccooooooccc4444dddd22ee	chr19:2216183-2216436(+)$1	253	78	115	15.0331
fddddbb[ccc"""bboooooobb333ccc]bb]ddd	chr1:220345209-220345492(-)$1	283	59	96	14.8301
eeeee!!ccc"""cccooooooccc333ccc22eeee	chr1:32797676-32797944(+)$1	268	150	187	18.1067
ddd####dddd[ddddoooooodddddddddddd]cc	chr14:105818637-105818906(+)$1	269	101	138	14.0550
!!ggggggg####addddllldddd]a4444gggggg	chr17:40721442-40721728(+)$1	286	195	232	14.5035

#otherMatches

#Seq PSSM
ACUUGGCAGAGAACAAUGUGUUUGGGAUUGUGCCACU	chr17:27445294-27445497(-)$1	203	59	96	13.3025
GUUCUGGCAACUGCCUGUGGAGAGGCCCGUGUCCUGG	chr17:73486251-73486525(+)$1	274	111	148	16.0310
CUGUUUUUUUUGGUGGUCUGUCUAUCAAGAAGGAUGA	chr6:31504302-31504547(-)$1	245	91	128	15.5529
GGCAGGGGCCCAUGGGGCCUCUCCCGGCUCCUUCCUU	chr17:79968641-79968844(+)$1	203	136	173	18.5245
AGUACAUUGUAUGGCAAACUUAUGUCUCAGGUAUGUG	chr17:58150429-58150693(-)$1	264	139	176	16.9874
GGCAGGGGUUUGUGCCUCCAAUGAGCACAAGCUCCCC	chr19:45871795-45872093(-)$1	298	33	70	18.9705
GUCGUGGGCUGGGUGAAGGAGAUCACCCAGUACCACA	chr12:133215773-133215985(-)$1	212	117	154	15.2689
UGGCUGAAUGCCAGUCACUCUAGAUAGAAUAUAGCCA	chr3:188477878-188478187(+)$1	309	239	276	16.6048
ACGUGAGUGAAGAGGUGUGGUACCGAGUCAUUCAGAU	chr11:992538-992816(+)$1	278	58	95	14.3625
AGGGAGGGUGUUGGGCCAAGAAGCCACCUGAUCUGGG	chr3:183910788-183911022(+)$1	234	50	87	15.4761
CGCUGGUCGCUGCCGGACGGCGUGGGCGGUGGCCGCC	chr13:100741281-100741540(+)$1	259	121	158	17.1332
GCUACAAGUGACGAGAAAGAUUCUGUUUCAAAUAUAG	chr2:97847402-97847630(+)$1	228	55	92	12.8884
GCUGCAGGUGUUCCUAGCAGGUAGGUACAGACAGUGG	chr7:100159863-100160086(+)$1	223	119	156	13.9579
UGGACAGCCGAGGUGGAGUGAGCGGGCAGGUGGUGCA	chr3:38167215-38167458(-)$1	243	175	212	16.7437
CUGUUUUCUUUUCCCUCUUCCAGGAAGAGGAAGACAG	chr16:57490740-57491002(+)$1	262	79	116	16.3331
UCUUUAAAGGAGUGUUCUAUAACAAACUAACCUCUAA	chr2:61330887-61331222(+)$1	335	41	78	12.9969
UGAAGGCCAUCAAGCACACCAUUGCUGUGGUCUGGGG	chr3:58094804-58095020(+)$1	216	177	214	16.2248
UGGAGGAGGAGGAGACCAUUGAGUUUGUCCGGGCCAC	chr6:30632832-30633128(-)$1	296	225	262	16.1989
AGGGGCUGGUGGGCAUUGCUUCUUCCAUGCCACUCCC	chr12:120616565-120616797(-)$1	232	156	193	12.9612
GAAAGGCGAUGAUCAUAAAGACAUGGACAUCAUCACC	chr10:13653514-13653785(+)$1	271	120	157	15.2545
AGAAGACAGGUUCUACUUUUCUGAUGGCCUUGUCUUC	chr6:167344429-167344703(-)$1	274	208	245	17.8210
GUGGCCUGGUACAUCAACGACAUGAAGAGGAGGCAUG	chr14:65197680-65197988(+)$1	308	150	187	15.7082
GUAUCGUCAGCCACUUGCAGGUGAGGGCUGAGAGCGG	chr7:107641907-107642178(-)$1	271	156	193	13.4472
CGCUGCCUCCCCUGCCACUGAGGGCCGGGGGGGUAGU	chr2:122125291-122125508(-)$1	217	118	155	20.0643
CCUGCGUCCCCACCCCAGCCCCGGGCCUGGGGGCAGC	chr17:74401496-74401750(-)$1	254	162	199	17.1442
UUAGCGUCCCCGGGUUGUCGGGAGCCUGGGGCACGCG	chr11:830568-830817(+)$1	249	203	240	16.1472
CGCUGUCCAGCCUGAGUAUCCUCUUCCAGAUGGCCAG	chr20:61595479-61595687(+)$1	208	20	57	15.7153
GGGGCCUGGUGCUGCGGUGAGGCUGCCGUGGGUCCCU	chr21:45744667-45744925(+)$1	258	117	154	15.1703
AGCGUCUGGACCGACCACAAGAGGGGCCACACCAAGG	chr13:113741443-113741844(+)$1	401	150	187	14.3946
CAGGGAGGCCCAGGCAGCCCCAUCCUCUCCUCCCUGG	chr1:21939556-21939808(-)$1	252	11	48	18.8012
CUCGCCUGAUGAACUCCAAGGGGGAGUAUCAGGUGAG	chr17:79684712-79684994(+)$1	282	147	184	14.3625
ugcgucuggccCCUAUUUAAUAACUUCUAAAUGCAGG	chr1:70705020-70705304(+)$1	284	43	80	12.9329
CCUGGAGACCCGGUAGGAAGCGCUGUGGGGUUGGGGG	chr21:47414018-47414244(+)$1	226	113	150	14.2937
UAUGCCCUCCAGCGGUGCAGAAACUGAAGAAGGUACG	chr5:73076399-73076676(+)$1	277	139	176	16.9113
CCCGGCCCUGGAGGAGCUGGAUCUCACCGCCUGCCGC	chr10:104181791-104182038(+)$1	247	39	76	17.9162
AGAAAACUAGGUGAGACAAAUAUUUUAAAUUGUUUUC	chr4:123854509-123854751(+)$1	242	133	170	17.2827
ACUUGUGAAUCAGCCAGUGUGAUGGCUGCGACACUGG	chr2:191791925-191792235(+)$1	310	124	161	15.5415
UUGCUGAUCAACCCUUGAUUAAAGCUGUAAUUUGGCA	chr15:57355845-57356122(+)$1	277	182	219	15.0669
UACUGUCACCACCGCAAGAUCCUGCACCGGGACCUGA	chr1:205496827-205497075(+)$1	248	127	164	16.0740
CAAGGUGGCAGCUCUCACUGCGGGGACCCUGCUACUU	chr19:35540113-35540395(+)$1	282	111	148	18.0591
GAUGGGACCGACUUUGACAACCCAGUGCACCGGUCUC	chr17:16978926-16979195(+)$1	269	136	173	18.7660
AGGGCACAGUAUGUGCCAUCAUGCACAGCAGCCCUGG	chr6:30520254-30520538(-)$1	284	28	65	13.2406
ACCCAGUGAUGCUGCUGAUGAAGGUAGAGACACGUCC	chr10:113923358-113923623(-)$1	265	49	86	15.8535
CCAUCUCUCCUCCUGCAGAUCAGCAUUGUGGAGCUAG	chr19:2216183-2216436(+)$1	253	78	115	15.0331
CAGGGUAAGAGUUUAUUUUUCUGUUUUCUCCUAUCCC	chr1:220345209-220345492(-)$1	283	59	96	14.8301
CCCAGAGGAGAAGAAAGGUGGGUUUGGGUUCAGCUGG	chr1:32797676-32797944(+)$1	268	150	187	18.1067
CAUGAGAUUGUGCUGCCCCCCAGUGGACAAGUGGAGA	chr14:105818637-105818906(+)$1	269	101	138	14.0550
UGAAUGGGGGGAACCAGAACUUCUGAGGCAACUUCAU	chr17:40721442-40721728(+)$1	286	195	232	14.5035

#DB
(..(((((.((..(((.....)))...)).))))).)	chr17:27445294-27445497(-)$1	1	59	96	13.3025
(((..((((...((((......))))...))))..))	chr17:73486251-73486525(+)$1	1	111	148	16.0310
.(((((((((((((((.....))))))))))))))).	chr6:31504302-31504547(-)$1	1	91	128	15.5529
((.(((((((...(((......)))))))))).))))	chr17:79968641-79968844(+)$1	1	136	173	18.5245
(.(((.(((...((((......)))).))))))))))	chr17:58150429-58150693(-)$1	1	139	176	16.9874
((..((((((((((((......).)))))))))))))	chr19:45871795-45872093(-)$1	1	33	70	18.9705
(..(((((((((((((......))))))))).)))).	chr12:133215773-133215985(-)$1	1	117	154	15.2689
((((((.((....(((......)))...)).))))))	chr3:188477878-188478187(+)$1	1	239	276	16.6048
((((((((((...((((...))))...)))))))...	chr11:992538-992816(+)$1	1	58	95	14.3625
(((..((((....(((......)))))))..))))((	chr3:183910788-183911022(+)$1	1	50	87	15.4761
))))((((((((((.(......).)))))))))).((	chr13:100741281-100741540(+)$1	1	121	158	17.1332
((((....(((..((((...))))...)))....)))	chr2:97847402-97847630(+)$1	1	55	92	12.8884
((((....(((.((((.....)))).)))..))))))	chr7:100159863-100160086(+)$1	1	119	156	13.9579
((.((.(((..(.(.(......).).).))).)).))	chr3:38167215-38167458(-)$1	1	175	212	16.7437
((((((((((((.(((.....))).))))))))))))	chr16:57490740-57491002(+)$1	1	79	116	16.3331
...(((.(((...(((........)))...))).)))	chr2:61330887-61331222(+)$1	1	41	78	12.9969
...(((((((..((((......)))))))))))))))	chr3:58094804-58095020(+)$1	1	177	214	16.2248
(((.((.(((..((((......)))).)))...)).)	chr6:30632832-30633128(-)$1	1	225	262	16.1989
(((((..(((((.(((.(......).))))))))..)	chr12:120616565-120616797(-)$1	1	156	193	12.9612
(((.((.(((((((((......)))...)))))).))	chr10:13653514-13653785(+)$1	1	120	157	15.2545
.(((((((((..((((......).))).)))))))))	chr6:167344429-167344703(-)$1	1	208	245	17.8210
(((((((....(.(((......))).)...))))...	chr14:65197680-65197988(+)$1	1	150	187	15.7082
((.((.((((((.(((......)))))))))))))))	chr7:107641907-107642178(-)$1	1	156	193	13.4472
)(((((((((((.(((......))).)))))))))))	chr2:122125291-122125508(-)$1	1	118	155	20.0643
...(((((((((.(((......)))..))))))).))	chr17:74401496-74401750(-)$1	1	162	199	17.1442
...(((((((((((((......))))))))).)))).	chr11:830568-830817(+)$1	1	203	240	16.1472
(((((.(((..(((((......))..))).))).)))	chr20:61595479-61595687(+)$1	1	20	57	15.7153
((((((((..((.((......)).))..)))))))))	chr21:45744667-45744925(+)$1	1	117	154	15.1703
(.(((.(((.((..((......))))))).))...).	chr13:113741443-113741844(+)$1	1	150	187	14.3946
((((((((...(((.(......))))..)))))))))	chr1:21939556-21939808(-)$1	1	11	48	18.8012
((((((((((..(((((.....)))))))))))))))	chr17:79684712-79684994(+)$1	1	147	184	14.3625
(((((.(((....(((...)))....))).)))))))	chr1:70705020-70705304(+)$1	1	43	80	12.9329
(((...(((((.((((......)))).)))))))))(	chr21:47414018-47414244(+)$1	1	113	150	14.2937
.(((((((.(..((((......))))..).)))...)	chr5:73076399-73076676(+)$1	1	139	176	16.9113
..((((..(((..(((......))).)))...)))).	chr10:104181791-104182038(+)$1	1	39	76	17.9162
(((((((....(((((......)))))....))))))	chr4:123854509-123854751(+)$1	1	133	170	17.2827
(...(((...((((((......))))))...)))).)	chr2:191791925-191792235(+)$1	1	124	161	15.5415
(((((((...((.(((.....)))..))...))))))	chr15:57355845-57356122(+)$1	1	182	219	15.0669
....(((.((...(((......)))...))))).)))	chr1:205496827-205497075(+)$1	1	127	164	16.0740
))(((((((((.((((......))))..)))))))))	chr19:35540113-35540395(+)$1	1	111	148	18.0591
...(((((((.(.(((......))).)...)))))))	chr17:16978926-16979195(+)$1	1	136	173	18.7660
(((((...((.(((((......))))))).)))))).	chr6:30520254-30520538(-)$1	1	28	65	13.2406
((...(((...(((((......)))))...)))))).	chr10:113923358-113923623(-)$1	1	49	86	15.8535
)))(((((.(((((((......)))....))))..))	chr19:2216183-2216436(+)$1	1	78	115	15.0331
)((((((.(((...((......))...))).)).)))	chr1:220345209-220345492(-)$1	1	59	96	14.8301
(((((..(((...(((......)))...)))..))))	chr1:32797676-32797944(+)$1	1	150	187	18.1067
(((....((((.((((......)))))))))))).))	chr14:105818637-105818906(+)$1	1	101	138	14.0550
..(((((((....(((((...)))).)....))))))	chr17:40721442-40721728(+)$1	1	195	232	14.5035

#PSSM
e : 0.14	d : 0.12	c : 0.10	f : 0.08	i : 0.08	! : 0.06	g : 0.06	= : 0.06	h : 0.04	$ : 0.04	b : 0.04	# : 0.04	" : 0.02	: : 0.02	[ : 0.02	a : 0.02	% : 0.02	
d : 0.14	e : 0.12	= : 0.10	i : 0.10	! : 0.08	c : 0.08	g : 0.06	[ : 0.04	f : 0.04	" : 0.04	$ : 0.04	b : 0.04	# : 0.04	h : 0.02	% : 0.02	
d : 0.12	i : 0.12	= : 0.10	c : 0.10	e : 0.10	! : 0.06	[ : 0.06	" : 0.06	f : 0.04	$ : 0.04	a : 0.04	g : 0.04	# : 0.04	h : 0.02	% : 0.02	
e : 0.12	d : 0.12	i : 0.12	= : 0.10	g : 0.10	c : 0.08	b : 0.08	! : 0.06	" : 0.06	f : 0.04	[ : 0.04	% : 0.02	# : 0.02	
= : 0.14	c : 0.12	d : 0.12	b : 0.12	g : 0.10	i : 0.10	e : 0.08	# : 0.06	! : 0.04	f : 0.04	" : 0.04	
= : 0.14	d : 0.12	g : 0.12	[ : 0.12	c : 0.10	i : 0.10	# : 0.06	b : 0.06	e : 0.04	! : 0.04	" : 0.04	f : 0.02	
c : 0.18	= : 0.14	g : 0.12	d : 0.10	i : 0.10	[ : 0.08	e : 0.06	# : 0.06	! : 0.06	f : 0.02	" : 0.02	b : 0.02	
c : 0.20	= : 0.12	g : 0.12	i : 0.12	e : 0.08	# : 0.08	d : 0.06	" : 0.06	f : 0.04	[ : 0.04	b : 0.02	! : 0.02	
c : 0.25	= : 0.12	g : 0.12	i : 0.08	" : 0.08	[ : 0.06	d : 0.06	b : 0.06	e : 0.04	f : 0.04	# : 0.04	! : 0.02	
c : 0.14	" : 0.12	= : 0.12	# : 0.12	g : 0.10	i : 0.08	b : 0.06	! : 0.06	e : 0.04	f : 0.04	d : 0.04	[ : 0.02	a : 0.02	
" : 0.18	! : 0.14	# : 0.12	= : 0.10	b : 0.08	c : 0.08	i : 0.06	f : 0.06	e : 0.04	[ : 0.04	d : 0.04	g : 0.02	
! : 0.16	" : 0.16	= : 0.10	# : 0.08	[ : 0.08	e : 0.08	a : 0.06	f : 0.06	b : 0.06	i : 0.04	c : 0.04	g : 0.02	d : 0.02	
d : 0.20	[ : 0.20	" : 0.12	! : 0.08	# : 0.08	e : 0.08	= : 0.06	c : 0.06	i : 0.04	f : 0.04	
c : 0.45	d : 0.22	e : 0.08	= : 0.06	i : 0.04	a : 0.04	b : 0.02	! : 0.02	f : 0.02	" : 0.02	
c : 0.41	d : 0.25	b : 0.08	e : 0.08	[ : 0.06	= : 0.04	i : 0.04	f : 0.02	
c : 0.39	d : 0.25	a : 0.10	e : 0.08	b : 0.06	i : 0.04	= : 0.02	o : 0.02	f : 0.02	
o : 0.75	n : 0.10	d : 0.06	q : 0.02	[ : 0.02	e : 0.02	l : 0.02	
o : 0.75	n : 0.12	l : 0.06	q : 0.02	a : 0.02	d : 0.02	
o : 0.77	n : 0.12	l : 0.08	q : 0.02	
o : 0.77	n : 0.12	l : 0.06	q : 0.02	c : 0.02	
o : 0.77	n : 0.12	d : 0.04	q : 0.02	c : 0.02	l : 0.02	
o : 0.75	c : 0.08	d : 0.08	= : 0.02	q : 0.02	b : 0.02	n : 0.02	
c : 0.33	d : 0.25	a : 0.10	b : 0.08	e : 0.08	i : 0.04	= : 0.02	q : 0.02	o : 0.02	4 : 0.02	f : 0.02	
c : 0.35	d : 0.25	] : 0.10	e : 0.08	b : 0.06	i : 0.04	= : 0.02	q : 0.02	o : 0.02	4 : 0.02	f : 0.02	
c : 0.33	d : 0.20	3 : 0.08	e : 0.08	= : 0.06	i : 0.04	a : 0.04	2 : 0.04	b : 0.04	] : 0.02	4 : 0.02	f : 0.02	
d : 0.18	3 : 0.16	] : 0.16	= : 0.08	e : 0.08	c : 0.06	2 : 0.06	i : 0.04	f : 0.04	b : 0.04	4 : 0.04	g : 0.02	
3 : 0.18	c : 0.16	= : 0.10	2 : 0.10	a : 0.08	e : 0.08	] : 0.06	g : 0.04	i : 0.04	d : 0.04	f : 0.04	b : 0.02	4 : 0.02	
c : 0.20	3 : 0.18	= : 0.12	g : 0.08	2 : 0.08	b : 0.06	4 : 0.06	i : 0.04	d : 0.04	] : 0.04	f : 0.04	e : 0.02	
c : 0.25	3 : 0.14	= : 0.12	i : 0.12	b : 0.08	g : 0.08	4 : 0.06	d : 0.04	f : 0.04	e : 0.02	a : 0.02	
3 : 0.14	] : 0.12	= : 0.12	c : 0.12	i : 0.12	g : 0.08	d : 0.06	b : 0.04	2 : 0.04	e : 0.04	f : 0.04	4 : 0.04	
c : 0.16	= : 0.12	i : 0.12	g : 0.10	e : 0.08	d : 0.08	3 : 0.08	4 : 0.06	f : 0.06	] : 0.04	2 : 0.04	b : 0.02	
= : 0.14	c : 0.14	g : 0.12	i : 0.12	d : 0.10	e : 0.08	] : 0.06	f : 0.06	b : 0.06	3 : 0.04	4 : 0.02	2 : 0.02	
d : 0.18	= : 0.14	c : 0.14	i : 0.12	g : 0.10	e : 0.06	f : 0.06	b : 0.06	3 : 0.04	] : 0.02	4 : 0.02	2 : 0.02	
d : 0.16	= : 0.14	i : 0.12	g : 0.10	e : 0.08	] : 0.08	f : 0.06	b : 0.06	2 : 0.04	3 : 0.04	c : 0.04	h : 0.02	4 : 0.02	
d : 0.14	= : 0.12	i : 0.12	e : 0.08	] : 0.08	c : 0.08	2 : 0.06	g : 0.06	3 : 0.06	f : 0.04	b : 0.04	h : 0.02	: : 0.02	5 : 0.02	a : 0.02	
d : 0.12	i : 0.12	= : 0.10	g : 0.10	e : 0.10	c : 0.10	] : 0.06	h : 0.06	b : 0.06	f : 0.04	3 : 0.04	2 : 0.02	5 : 0.02	a : 0.02	
c : 0.16	i : 0.12	g : 0.10	e : 0.10	= : 0.08	h : 0.06	b : 0.06	d : 0.06	] : 0.06	5 : 0.04	3 : 0.04	2 : 0.02	f : 0.02	a : 0.02	: : 0.02	

#score	759.0184477122435
#seq	48
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_transcript_m1_run2.txt

#BEAR
ddddtttttttttttdddd22b	chr2:223806436-223806717(+)$1	281	59	81	21.7170
dddvvvvvvvvvvvvvdddd33	chr3:133306823-133307132(+)$1	309	278	300	23.1168
"ccctttttttttttccc333e	chr5:135399001-135399314(+)$1	313	80	102	22.4116
cccwwwwwwwwwwwwwwccc]a	chr1:115260588-115260912(-)$1	324	115	137	21.8466
eeeettttttttttteeeee]e	chr7:94297225-94297475(+)$1	250	165	187	22.1060
fffyyyyyyyyyyyyyyyyfff	chrM:8354-8603(+)$1	249	36	58	19.2837
eeeeettttttttttteeeee:	chr2:21230631-21230860(-)$1	229	75	97	20.4000
iiiivvvvvvvvvvvvviiiii	chr11:102269150-102269374(-)$1	224	34	56	22.8754
eeeevvvvvvvvvvvvveeeee	chr16:58559035-58559364(-)$1	329	115	137	23.0557
ddddwwwwwwwwwwwwwwdddd	chr20:48741368-48741623(-)$1	255	170	192	21.6679
fccctttttttttttccc333f	chr1:55317510-55317745(-)$1	235	92	114	22.2839
cccvvvvvvvvvvvvvcccccc	chr19:3123472-3123768(+)$1	296	81	103	22.6870
ggggtttttttttttggggggg	chr16:69496521-69496774(+)$1	253	128	150	21.6270
dddduuuuuuuuuuuudddd]c	chr2:173369288-173369510(+)$1	222	62	84	23.4203
gggguuuuuuuuuuuugggggg	chr10:101911164-101911422(-)$1	258	196	218	22.7355
ddddwwwwwwwwwwwwwwdddd	chr19:43011451-43011718(-)$1	267	139	161	21.6679
ddddvvvvvvvvvvvvvddddc	chr5:42800835-42801088(-)$1	253	38	60	23.2017
dddvvvvvvvvvvvvvdddd33	chr17:39911251-39911539(-)$1	288	133	155	23.1168
fffvvvvvvvvvvvvvffffff	chr16:31102234-31102515(-)$1	281	197	219	21.4930
hhhhwwwwwwwwwwwwwwhhhh	chr17:73939473-73939724(-)$1	251	94	116	20.0782
eeeevvvvvvvvvvvvveeeee	chr19:49469531-49469756(+)$1	225	63	85	23.0557
ddddtttttttttttdddd444	chr17:42397167-42397474(-)$1	307	26	48	22.1790
eeeewwwwwwwwwwwwwweeee	chr2:21228936-21229160(-)$1	224	26	48	21.6434
ddyyyyyyyyyyyyyyyydddd	chr16:23584326-23584566(+)$1	240	134	156	20.2027
ggggtttttttttttggggggg	chr1:40539011-40539289(-)$1	278	198	220	21.6270
ggggtttttttttttggggggg	chr16:69496463-69496721(+)$1	258	186	208	21.6270
dddduuuuuuuuuuuudddd]d	chr1:90400064-90400349(+)$1	285	236	258	23.3448
e!!bbtttttttttttbb22ee	chr7:103202232-103202476(-)$1	244	214	236	20.5187
eeeewwwwwwwwwwwwwweeee	chr7:139257480-139257748(-)$1	268	64	86	21.6434
eeeewwwwwwwwwwwwwweeee	chr2:21228960-21229190(-)$1	230	56	78	21.6434
dddduuuuuuuuuuuudddd]e	chr2:216229598-216229808(-)$1	210	114	136	23.3863
!ccctttttttttttccc22ee	chrX:38547215-38547493(+)$1	278	62	84	21.9947
ggggvvvvvvvvvvvvvggggg	chr9:124102988-124103297(-)$1	309	246	268	22.8863
ddddvvvvvvvvvvvvvdddd2	chr6:36935997-36936257(-)$1	260	28	50	23.0009
eeeettttttttttteeeeecc	chr19:2071558-2071864(-)$1	306	28	50	21.8973
"cccvvvvvvvvvvvvvccc44	chr7:139305069-139305330(-)$1	261	80	102	23.0931
eeevvvvvvvvvvvvveeeeed	chr12:46754731-46755007(-)$1	276	179	201	22.5518
d[bbwwwwwwwwwwwwwwbb]d	chr7:94296406-94296622(+)$1	216	180	202	20.6541
yyyyyyyyyyyyyyyydddd]c	chr20:30754114-30754341(+)$1	227	33	55	19.5381
dddduuuuuuuuuuuuddddFF	chr11:8008908-8009189(+)$1	281	31	53	22.2919
c!!bbtttttttttttbb333c	chr2:128948324-128948589(+)$1	265	173	195	21.0490
:ccctttttttttttcccdddd	chr13:113539840-113540094(+)$1	254	96	118	21.2572
!!bbuuuuuuuuuuuubb22cc	chr17:40126031-40126310(+)$1	279	28	50	21.8972
eeeevvvvvvvvvvvvveeeee	chr2:21228252-21228505(-)$1	253	175	197	23.0557
dddduuuuuuuuuuuudddd]a	chr14:94847142-94847359(-)$1	217	56	78	23.3568
ddddtttttttttttddddccc	chr1:167759281-167759569(+)$1	288	11	33	22.0885
"cccvvvvvvvvvvvvvccc33	chr1:109852381-109852666(-)$1	285	115	137	23.2736
gggguuuuuuuuuuuugggggg	chr2:188330429-188330722(-)$1	293	174	196	22.7355
ddddwwwwwwwwwwwwwwdddd	chr5:72798679-72798972(+)$1	293	171	193	21.6679
ddwwwwwwwwwwwwwwdddd33	chr3:126261295-126261585(+)$1	290	167	189	21.4750
hhhhvvvvvvvvvvvvvhhhhh	chr20:24944304-24944553(-)$1	249	186	208	21.2984
ddavvvvvvvvvvvvva]dddd	chr5:134262632-134262911(-)$1	279	117	139	22.6908
iiiivvvvvvvvvvvvviiiii	chr15:99503244-99503539(+)$1	295	235	257	22.8754
eeeeuuuuuuuuuuuueeeee2	chr6:64290430-64290742(+)$1	312	20	42	22.7583
!cccuuuuuuuuuuuuccc22e	chr1:236140715-236141059(-)$1	344	134	156	23.0260
c[bbuuuuuuuuuuuubb333c	chr14:94845830-94846044(-)$1	214	38	60	22.4040
fffvvvvvvvvvvvvvffffff	chr10:7773786-7774016(+)$1	230	200	222	21.4930
ffffvvvvvvvvvvvvvfffff	chr21:27253702-27253967(-)$1	265	172	194	21.8862
ffffuuuuuuuuuuuuffffff	chr2:70508013-70508254(+)$1	241	4	26	21.6968
eeeettttttttttteeeee]h	chr2:21229745-21229992(-)$1	247	33	55	21.9297
eeeeuuuuuuuuuuuueeeee:	chr14:31569723-31570047(-)$1	324	215	237	21.9875
+ccctttttttttttccc>>>>	chr1:183112057-183112318(+)$1	261	73	95	20.6228
!!bbuuuuuuuuuuuubb]ddd	chr3:149087387-149087657(-)$1	270	98	120	22.0768
ddddtttttttttttddddddd	chr22:29191102-29191385(-)$1	283	75	97	22.0329
cyyyyyyyyyyyyyyyyccc]c	chr2:21228518-21228760(-)$1	242	145	167	20.1115
ggggyyyyyyyyyyyyyyyygg	chr2:71213502-71213810(-)$1	308	128	150	19.5246
yyyyyyyyyyyyyyyydddd33	chr3:40351241-40351526(+)$1	285	85	107	19.5826

#otherMatches

#Seq PSSM
GUCACCAUUUUUAACUGACAGG	chr2:223806436-223806717(+)$1	281	59	81	21.7170
AACUAGUUUCAACAGUGUUCUU	chr3:133306823-133307132(+)$1	309	278	300	23.1168
AGAUGUACUUUUUAAAUCAUGU	chr5:135399001-135399314(+)$1	313	80	102	22.4116
UUGACUAACCACAUCCACAAAG	chr1:115260588-115260912(-)$1	324	115	137	21.8466
UUGCCACCACUGCAAGCAAAAG	chr7:94297225-94297475(+)$1	250	165	187	22.1060
UGGCCCACCAUAAUUACCCCCA	chrM:8354-8603(+)$1	249	36	58	19.2837
ACUUGAAAUUCAAUCACAAGUC	chr2:21230631-21230860(-)$1	229	75	97	20.4000
UCUUUUUUUUUUUGGCUGGGGU	chr11:102269150-102269374(-)$1	224	34	56	22.8754
UGGGAAUCGCUACAACCUCCAG	chr16:58559035-58559364(-)$1	329	115	137	23.0557
CUCAUGACACAGAAUACUUGAG	chr20:48741368-48741623(-)$1	255	170	192	21.6679
ugagucccuuaaccccucugag	chr1:55317510-55317745(-)$1	235	92	114	22.2839
GAGUGCCGACCACCUUCUCCGA	chr19:3123472-3123768(+)$1	296	81	103	22.6870
GGUGUUUCCUCUCUUCACUGGU	chr16:69496521-69496774(+)$1	253	128	150	21.6270
GGCCGUCCUAACCUCGGGCCUG	chr2:173369288-173369510(+)$1	222	62	84	23.4203
UAUUCAUAAACUCAGAGAUACA	chr10:101911164-101911422(-)$1	258	196	218	22.7355
GCAUACUUUCCCUCAUCCAUGC	chr19:43011451-43011718(-)$1	267	139	161	21.6679
UCUGAUAUUUGAAAAAACAGGG	chr5:42800835-42801088(-)$1	253	38	60	23.2017
AGCCUCCCUGUCUCCAGCUGCC	chr17:39911251-39911539(-)$1	288	133	155	23.1168
CAUGACAAUGGACCAAAUGUGC	chr16:31102234-31102515(-)$1	281	197	219	21.4930
cuuuuuuuuccaccccaugagg	chr17:73939473-73939724(-)$1	251	94	116	20.0782
CUGGAGAAAAAGCUGAACCAGG	chr19:49469531-49469756(+)$1	225	63	85	23.0557
GUGCCAUCAUGAUCAGCACCUA	chr17:42397167-42397474(-)$1	307	26	48	22.1790
UCCAAAAUUGAUGAUAUCUGGA	chr2:21228936-21229160(-)$1	224	26	48	21.6434
GAUAAUUUCUAUACAAUUUCCU	chr16:23584326-23584566(+)$1	240	134	156	20.2027
UAGCACCCAAAUUAAGUUGCUU	chr1:40539011-40539289(-)$1	278	198	220	21.6270
GGUGUUUCCUCUCUUCACUGGU	chr16:69496463-69496721(+)$1	258	186	208	21.6270
GCUCAAAAACCUUCGAGAGUUG	chr1:90400064-90400349(+)$1	285	236	258	23.3448
UGUGUAAGUUAAUAAAACUGAC	chr7:103202232-103202476(-)$1	244	214	236	20.5187
CCUUACAUAUAAACACUGGAGg	chr7:139257480-139257748(-)$1	268	64	86	21.6434
UCCAAAAUUGAUGAUAUCUGGA	chr2:21228960-21229190(-)$1	230	56	78	21.6434
UAUGAUGAUGGGAAGACAUACC	chr2:216229598-216229808(-)$1	210	114	136	23.3863
AGUACAUAAUACACUUGCCCUG	chrX:38547215-38547493(+)$1	278	62	84	21.9947
AGAGUCuuuuuuuuuuuuuuuc	chr9:124102988-124103297(-)$1	309	246	268	22.8863
GGCCACCAUCAUGUCUAGGCCU	chr6:36935997-36936257(-)$1	260	28	50	23.0009
GCUUAUGAUCAACCCAAGCAGG	chr19:2071558-2071864(-)$1	306	28	50	21.8973
CGGUGAACCAGAGCAAAACCCC	chr7:139305069-139305330(-)$1	261	80	102	23.0931
AAAUUUCACCUAAUGUUUUCAG	chr12:46754731-46755007(-)$1	276	179	201	22.5518
UUGCUGAGACUCCAUUUUGCUG	chr7:94296406-94296622(+)$1	216	180	202	20.6541
UCACUCCCCAGCCCUUUCCUCA	chr20:30754114-30754341(+)$1	227	33	55	19.5381
CGccaaccccagucccggcggc	chr11:8008908-8009189(+)$1	281	31	53	22.2919
UUUGCCUUUAGUCCCUGCUUUG	chr2:128948324-128948589(+)$1	265	173	195	21.0490
cgcaccacaaacacaugcgcag	chr13:113539840-113540094(+)$1	254	96	118	21.2572
CUGUAACUUUUUAAAAACUUGU	chr17:40126031-40126310(+)$1	279	28	50	21.8972
GAAGACUCCUUGAUUCCCUUUU	chr2:21228252-21228505(-)$1	253	175	197	23.0557
CAUCUUCUUCCUGCCUGAUGAG	chr14:94847142-94847359(-)$1	217	56	78	23.3568
UGUGUCAUGUUUCCUUACAGUC	chr1:167759281-167759569(+)$1	288	11	33	22.0885
UCUCUUGUUCCCUUUCUGAGCA	chr1:109852381-109852666(-)$1	285	115	137	23.2736
UGUUCACCUCAAAUCUGACACU	chr2:188330429-188330722(-)$1	293	174	196	22.7355
GCUGACAGAAAUGCUACCCAGC	chr5:72798679-72798972(+)$1	293	171	193	21.6679
ccgacaagacccccggggaaug	chr3:126261295-126261585(+)$1	290	167	189	21.4750
ACACAGUCGUGGUUCAAGUGUC	chr20:24944304-24944553(-)$1	249	186	208	21.2984
CGCAGUCAUUCUCAUAGUCGCC	chr5:134262632-134262911(-)$1	279	117	139	22.6908
CAGACAGCUUGCCUUUUUCUGA	chr15:99503244-99503539(+)$1	295	235	257	22.8754
GUAUAUUUUUAGUACCAUACAG	chr6:64290430-64290742(+)$1	312	20	42	22.7583
ACAGACUUAUACACCCCUGAGU	chr1:236140715-236141059(-)$1	344	134	156	23.0260
UCCCAGAAGAACAAGAGGAAUG	chr14:94845830-94846044(-)$1	214	38	60	22.4040
CUACUAACUGACCCCCUAGAUA	chr10:7773786-7774016(+)$1	230	200	222	21.4930
UGUAUUCUAUCUCUCUUUACAU	chr21:27253702-27253967(-)$1	265	172	194	21.8862
UUUGCAGGCUUUUUAUCAGAUC	chr2:70508013-70508254(+)$1	241	4	26	21.6968
UCUCCAUUCACCAUAGAGAUGU	chr2:21229745-21229992(-)$1	247	33	55	21.9297
ACUGGUAAAUUUCUAACAGUGU	chr14:31569723-31570047(-)$1	324	215	237	21.9875
AGUGUCUCUUCCAUUCACGUUG	chr1:183112057-183112318(+)$1	261	73	95	20.6228
UAACAUACUCCCCACAGUCUAC	chr3:149087387-149087657(-)$1	270	98	120	22.0768
AUCUUCCUGCCUACUGGAUGCU	chr22:29191102-29191385(-)$1	283	75	97	22.0329
GUGUACACCAAAAACCCCAAUG	chr2:21228518-21228760(-)$1	242	145	167	20.1115
ggucuaccuuaacaucucuuga	chr2:71213502-71213810(-)$1	308	128	150	19.5246
UUUUCUUAUUUAUUUCCGUUUU	chr3:40351241-40351526(+)$1	285	85	107	19.5826

#DB
((((...........))))..)	chr2:223806436-223806717(+)$1	1	59	81	21.7170
(((.............))))..	chr3:133306823-133307132(+)$1	1	278	300	23.1168
.(((...........)))...)	chr5:135399001-135399314(+)$1	1	80	102	22.4116
(((..............))).)	chr1:115260588-115260912(-)$1	1	115	137	21.8466
((((...........))))).)	chr7:94297225-94297475(+)$1	1	165	187	22.1060
(((................)))	chrM:8354-8603(+)$1	1	36	58	19.2837
(((((...........))))).	chr2:21230631-21230860(-)$1	1	75	97	20.4000
((((.............)))))	chr11:102269150-102269374(-)$1	1	34	56	22.8754
((((.............)))))	chr16:58559035-58559364(-)$1	1	115	137	23.0557
((((..............))))	chr20:48741368-48741623(-)$1	1	170	192	21.6679
((((...........)))...)	chr1:55317510-55317745(-)$1	1	92	114	22.2839
(((.............))))))	chr19:3123472-3123768(+)$1	1	81	103	22.6870
((((...........)))))))	chr16:69496521-69496774(+)$1	1	128	150	21.6270
((((............)))).)	chr2:173369288-173369510(+)$1	1	62	84	23.4203
((((............))))))	chr10:101911164-101911422(-)$1	1	196	218	22.7355
((((..............))))	chr19:43011451-43011718(-)$1	1	139	161	21.6679
((((.............)))))	chr5:42800835-42801088(-)$1	1	38	60	23.2017
(((.............))))..	chr17:39911251-39911539(-)$1	1	133	155	23.1168
(((.............))))))	chr16:31102234-31102515(-)$1	1	197	219	21.4930
((((..............))))	chr17:73939473-73939724(-)$1	1	94	116	20.0782
((((.............)))))	chr19:49469531-49469756(+)$1	1	63	85	23.0557
((((...........))))...	chr17:42397167-42397474(-)$1	1	26	48	22.1790
((((..............))))	chr2:21228936-21229160(-)$1	1	26	48	21.6434
((................))))	chr16:23584326-23584566(+)$1	1	134	156	20.2027
((((...........)))))))	chr1:40539011-40539289(-)$1	1	198	220	21.6270
((((...........)))))))	chr16:69496463-69496721(+)$1	1	186	208	21.6270
((((............)))).)	chr1:90400064-90400349(+)$1	1	236	258	23.3448
(..((...........))..))	chr7:103202232-103202476(-)$1	1	214	236	20.5187
((((..............))))	chr7:139257480-139257748(-)$1	1	64	86	21.6434
((((..............))))	chr2:21228960-21229190(-)$1	1	56	78	21.6434
((((............)))).)	chr2:216229598-216229808(-)$1	1	114	136	23.3863
.(((...........)))..))	chrX:38547215-38547493(+)$1	1	62	84	21.9947
((((.............)))))	chr9:124102988-124103297(-)$1	1	246	268	22.8863
((((.............)))).	chr6:36935997-36936257(-)$1	1	28	50	23.0009
((((...........)))))((	chr19:2071558-2071864(-)$1	1	28	50	21.8973
.(((.............)))..	chr7:139305069-139305330(-)$1	1	80	102	23.0931
(((.............)))))(	chr12:46754731-46755007(-)$1	1	179	201	22.5518
(.((..............)).)	chr7:94296406-94296622(+)$1	1	180	202	20.6541
................)))).)	chr20:30754114-30754341(+)$1	1	33	55	19.5381
((((............))))((	chr11:8008908-8009189(+)$1	1	31	53	22.2919
(..((...........))...)	chr2:128948324-128948589(+)$1	1	173	195	21.0490
.(((...........)))((((	chr13:113539840-113540094(+)$1	1	96	118	21.2572
..((............))..))	chr17:40126031-40126310(+)$1	1	28	50	21.8972
((((.............)))))	chr2:21228252-21228505(-)$1	1	175	197	23.0557
((((............)))).)	chr14:94847142-94847359(-)$1	1	56	78	23.3568
((((...........)))))))	chr1:167759281-167759569(+)$1	1	11	33	22.0885
.(((.............)))..	chr1:109852381-109852666(-)$1	1	115	137	23.2736
((((............))))))	chr2:188330429-188330722(-)$1	1	174	196	22.7355
((((..............))))	chr5:72798679-72798972(+)$1	1	171	193	21.6679
((..............))))..	chr3:126261295-126261585(+)$1	1	167	189	21.4750
((((.............)))))	chr20:24944304-24944553(-)$1	1	186	208	21.2984
(((.............).))))	chr5:134262632-134262911(-)$1	1	117	139	22.6908
((((.............)))))	chr15:99503244-99503539(+)$1	1	235	257	22.8754
((((............))))).	chr6:64290430-64290742(+)$1	1	20	42	22.7583
.(((............)))..)	chr1:236140715-236141059(-)$1	1	134	156	23.0260
(.((............))...)	chr14:94845830-94846044(-)$1	1	38	60	22.4040
(((.............))))))	chr10:7773786-7774016(+)$1	1	200	222	21.4930
((((.............)))))	chr21:27253702-27253967(-)$1	1	172	194	21.8862
((((............))))))	chr2:70508013-70508254(+)$1	1	4	26	21.6968
((((...........))))).)	chr2:21229745-21229992(-)$1	1	33	55	21.9297
((((............))))).	chr14:31569723-31570047(-)$1	1	215	237	21.9875
.(((...........)))....	chr1:183112057-183112318(+)$1	1	73	95	20.6228
..((............)).)))	chr3:149087387-149087657(-)$1	1	98	120	22.0768
((((...........)))))))	chr22:29191102-29191385(-)$1	1	75	97	22.0329
(................))).)	chr2:21228518-21228760(-)$1	1	145	167	20.1115
((((................))	chr2:71213502-71213810(-)$1	1	128	150	19.5246
................))))..	chr3:40351241-40351526(+)$1	1	85	107	19.5826

#PSSM
d : 0.29	e : 0.20	g : 0.10	f : 0.08	c : 0.07	! : 0.05	" : 0.04	i : 0.02	h : 0.02	y : 0.02	: : 0.01	+ : 0.01	
d : 0.28	e : 0.19	c : 0.14	g : 0.10	f : 0.07	! : 0.05	y : 0.04	i : 0.02	h : 0.02	[ : 0.02	
d : 0.23	e : 0.19	c : 0.14	g : 0.10	f : 0.07	y : 0.05	b : 0.05	i : 0.02	h : 0.02	! : 0.02	w : 0.01	a : 0.01	
d : 0.20	e : 0.17	c : 0.11	v : 0.10	g : 0.10	b : 0.08	y : 0.07	w : 0.02	i : 0.02	h : 0.02	f : 0.02	
v : 0.28	t : 0.22	u : 0.20	w : 0.14	y : 0.08	b : 0.02	e : 0.01	
v : 0.28	t : 0.26	u : 0.20	w : 0.14	y : 0.08	
v : 0.28	t : 0.26	u : 0.20	w : 0.14	y : 0.08	
v : 0.28	t : 0.26	u : 0.20	w : 0.14	y : 0.08	
v : 0.28	t : 0.26	u : 0.20	w : 0.14	y : 0.08	
v : 0.28	t : 0.26	u : 0.20	w : 0.14	y : 0.08	
v : 0.28	t : 0.26	u : 0.20	w : 0.14	y : 0.08	
v : 0.28	t : 0.26	u : 0.20	w : 0.14	y : 0.08	
v : 0.28	t : 0.26	u : 0.20	w : 0.14	y : 0.08	
v : 0.28	t : 0.26	u : 0.20	w : 0.14	y : 0.08	
v : 0.28	t : 0.26	u : 0.20	w : 0.14	y : 0.08	
v : 0.28	u : 0.20	w : 0.14	y : 0.08	c : 0.07	d : 0.05	e : 0.04	t : 0.04	g : 0.04	
d : 0.20	v : 0.17	w : 0.13	c : 0.10	e : 0.10	g : 0.07	b : 0.07	y : 0.05	f : 0.04	a : 0.01	
d : 0.23	c : 0.16	e : 0.14	w : 0.11	g : 0.08	b : 0.07	f : 0.05	y : 0.04	i : 0.02	h : 0.01	] : 0.01	
d : 0.32	e : 0.19	c : 0.08	g : 0.08	3 : 0.05	f : 0.05	2 : 0.04	y : 0.02	i : 0.02	h : 0.02	b : 0.01	> : 0.01	] : 0.01	
d : 0.29	e : 0.19	c : 0.08	g : 0.08	2 : 0.07	f : 0.07	3 : 0.05	i : 0.02	h : 0.02	4 : 0.01	b : 0.01	> : 0.01	y : 0.01	
e : 0.17	] : 0.14	d : 0.14	3 : 0.13	g : 0.10	f : 0.07	c : 0.05	2 : 0.02	i : 0.02	h : 0.02	4 : 0.02	F : 0.01	> : 0.01	
e : 0.17	d : 0.16	c : 0.14	g : 0.10	f : 0.08	3 : 0.07	h : 0.04	a : 0.02	: : 0.02	i : 0.02	4 : 0.02	2 : 0.02	b : 0.01	F : 0.01	> : 0.01	

#score	1469.4284705693012
#seq	67
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_transcript_m3_run1.txt

#BEAR
eee!!aqqqqqqqqa22ee	chr2:232326205-232326473(-)$1	268	159	178	13.4206
ccddddqqqqqqqqdddd:	chr17:19093384-19093592(-)$1	208	180	199	13.3136
d[ddddqqqqqqqqdddd]	chr19:893455-893690(+)$1	235	146	165	14.2803
ff[cccqqqqqqqqccc]f	chr14:21546492-21546748(+)$1	256	76	95	14.7251
g!!cccqqqqqqqqcccgg	chr2:54849382-54849624(+)$1	242	128	147	14.9642
hhhhhhqqqqqqqqhhhhh	chr17:80190708-80190951(+)$1	243	36	55	12.8990
d!!cccqqqqqqqqccc22	chr5:176516540-176516794(+)$1	254	141	160	14.5175
[eeeeeqqqqqqqqeeeee	chr12:112756954-112757265(-)$1	311	18	37	14.0525
[ccc[aqqqqqqqqaccc]	chr21:46929283-46929528(+)$1	245	52	71	14.4257
ggddddqqqqqqqqdddd]	chr16:2015089-2015396(+)$1	307	177	196	14.4144
[a[cccqqqqqqqqccc]a	chr4:1806517-1806754(+)$1	237	145	164	14.8787
ceeeeeqqqqqqqqeeeee	chr14:101200385-101200611(+)$1	226	10	29	13.9437
ccddddqqqqqqqqdddd:	chr17:19091317-19091520(+)$1	203	157	176	13.3136
ccccccqqqqqqqqccc]c	chr1:979483-979740(+)$1	257	121	140	14.5860
ffffffqqqqqqqqfffff	chr21:46888069-46888317(+)$1	248	3	22	13.4203
ee[cccqqqqqqqqccc33	chr2:159313486-159313829(+)$1	343	233	252	14.8761
ffffffqqqqqqqqfffff	chr1:8926237-8926458(-)$1	221	188	207	13.4203
""ddddqqqqqqqqdddd]	chr2:133015106-133015364(-)$1	258	159	178	14.2830
eeeeeaqqqqqqqqa]eee	chr19:51857296-51857633(-)$1	337	164	183	13.8952
ffffffqqqqqqqqfffff	chr3:184044922-184045214(+)$1	292	46	65	13.4203
iiiiiiqqqqqqqqiiiii	chr7:2403166-2403450(+)$1	284	138	157	14.2915
eee[bbqqqqqqqqbb]ee	chr8:99837539-99837771(-)$1	232	158	177	13.1947
e[ddddqqqqqqqqdddde	chr1:19487983-19488226(-)$1	243	6	25	14.2547
ee!!bbqqqqqqqqbb22e	chr17:80193762-80194054(+)$1	292	73	92	12.9533
)eeeeeqqqqqqqqeeeee	chr14:21860207-21860446(-)$1	239	22	41	13.4575
iiiiiiqqqqqqqqiiiii	chr1:19490652-19490888(-)$1	236	76	95	14.2915
ffffffqqqqqqqqfffff	chr1:67880748-67881031(-)$1	283	100	119	13.4203
hhddddqqqqqqqqdddd:	chr14:102548629-102548883(-)$1	254	79	98	13.1156
bb[cccqqqqqqqqccc]b	chr12:6619566-6619812(+)$1	246	119	138	14.0527
""ddddqqqqqqqqdddd3	chr7:127341134-127341411(+)$1	277	178	197	14.2670
ffffffqqqqqqqqfffff	chr3:58084337-58084594(+)$1	257	198	217	13.4203
((ddddqqqqqqqqdddd2	chr1:67895721-67896023(-)$1	302	41	60	12.7953
ee[cccqqqqqqqqcccee	chr20:60903825-60904055(-)$1	230	24	43	14.7543
ggggggqqqqqqqqggggg	chr6:144745101-144745314(+)$1	213	192	211	14.3656
dddcccqqqqqqqqcccff	chr17:37617680-37617971(+)$1	291	204	223	14.1864
hhhhhhqqqqqqqqhhhhh	chr12:26985754-26986012(-)$1	258	163	182	12.8990
b[ddddqqqqqqqqddddb	chr20:60913242-60913494(-)$1	252	15	34	13.8109
ggggggqqqqqqqqggggg	chr14:31604213-31604488(-)$1	275	100	119	14.3656
hhhhhhqqqqqqqqhhhhh	chr1:19483293-19483520(-)$1	227	73	92	12.8990
=eeeeeqqqqqqqqeeeee	chr1:245027514-245027764(-)$1	250	196	215	14.0135
ieeeeeqqqqqqqqeeeee	chr6:144812014-144812262(+)$1	248	178	197	14.0072
###cccqqqqqqqqccc33	chr5:138661102-138661446(+)$1	344	132	151	14.6721
ffffffqqqqqqqqfffff	chr1:35652702-35652951(-)$1	249	194	213	13.4203
ggggggqqqqqqqqggggg	chrX:152955823-152956064(+)$1	241	45	64	14.3656
ccddddqqqqqqqqdddd:	chr17:19091313-19091517(+)$1	204	161	180	13.3136
ii!!bbqqqqqqqqbb>>>	chr22:41545777-41546099(+)$1	322	159	178	12.7555
###cccqqqqqqqqccc33	chr7:103276709-103276944(-)$1	235	51	70	14.6721

#otherMatches

#Seq PSSM
UCAGAGgaugaggacgaug	chr2:232326205-232326473(-)$1	268	159	178	13.4206
ccgucagccauugaugauc	chr17:19093384-19093592(-)$1	208	180	199	13.3136
cauuuucccucccagaaac	chr19:893455-893690(+)$1	235	146	165	14.2803
UGGCAGAUCCCCGGCUGAC	chr14:21546492-21546748(+)$1	256	76	95	14.7251
GAUUGAACAAACCAUCAUC	chr2:54849382-54849624(+)$1	242	128	147	14.9642
CAGAGGCCAGGUUAUUUCU	chr17:80190708-80190951(+)$1	243	36	55	12.8990
GAAGUGGAGCUUGGUAUGG	chr5:176516540-176516794(+)$1	254	141	160	14.5175
AACAGACCCCUCUCUCUGU	chr12:112756954-112757265(-)$1	311	18	37	14.0525
CGGGAGCACCCCCACCCCA	chr21:46929283-46929528(+)$1	245	52	71	14.4257
GCGCGCUGCCCCAUGUGCG	chr16:2015089-2015396(+)$1	307	177	196	14.4144
CUGCCGACCCCAAAUGGGA	chr4:1806517-1806754(+)$1	237	145	164	14.8787
CCAGGGACCUUCUGCCCUG	chr14:101200385-101200611(+)$1	226	10	29	13.9437
ccgucagccauugaugauc	chr17:19091317-19091520(+)$1	203	157	176	13.3136
GACUUCAGCUGCCAGAGUG	chr1:979483-979740(+)$1	257	121	140	14.5860
GCCUGGCUGCCUCUCCAGG	chr21:46888069-46888317(+)$1	248	3	22	13.4203
UAAGCUGGAAAGUAAGUGU	chr2:159313486-159313829(+)$1	343	233	252	14.8761
UCCACACCUGCCACUGUGG	chr1:8926237-8926458(-)$1	221	188	207	13.4203
UUGGGGUACCGGAUCCCCC	chr2:133015106-133015364(-)$1	258	159	178	14.2830
CGGCUCAAGGAGAAGAAGC	chr19:51857296-51857633(-)$1	337	164	183	13.8952
GCAAGUGAGUGAAAAUUUG	chr3:184044922-184045214(+)$1	292	46	65	13.4203
AGAUCAGUACAGUGUGAUU	chr7:2403166-2403450(+)$1	284	138	157	14.2915
GGAGGCGGGUCCGAGUGUC	chr8:99837539-99837771(-)$1	232	158	177	13.1947
CACACCUGUAAAAUGGUGG	chr1:19487983-19488226(-)$1	243	6	25	14.2547
AGUCAGCCUGCUUUCUCUC	chr17:80193762-80194054(+)$1	292	73	92	12.9533
AGCAGGAUUUUGCCCCUGU	chr14:21860207-21860446(-)$1	239	22	41	13.4575
CAGUGCAGGUCAAGGUGCU	chr1:19490652-19490888(-)$1	236	76	95	14.2915
GCCGCCCAGGACGUGGCGG	chr1:67880748-67881031(-)$1	283	100	119	13.4203
UAGUCAUCACUUUUUGAUU	chr14:102548629-102548883(-)$1	254	79	98	13.1156
AUGAAACACAGAUCUUUGG	chr12:6619566-6619812(+)$1	246	119	138	14.0527
UCUCAAGUAUACCAUUGAA	chr7:127341134-127341411(+)$1	277	178	197	14.2670
UGUGUGUACAAACCCAUGC	chr3:58084337-58084594(+)$1	257	198	217	13.4203
UGCCUGGGCACUUACAGGA	chr1:67895721-67896023(-)$1	302	41	60	12.7953
GCUGCCACGAAGUAGGUGC	chr20:60903825-60904055(-)$1	230	24	43	14.7543
caaguaccacaagcugcuu	chr6:144745101-144745314(+)$1	213	192	211	14.3656
CCCGGCGACAGGAAGCCGU	chr17:37617680-37617971(+)$1	291	204	223	14.1864
GCCGUGCCCUCCGCCGCGG	chr12:26985754-26986012(-)$1	258	163	182	12.8990
GACACCUGAGGCCUGGUGC	chr20:60913242-60913494(-)$1	252	15	34	13.8109
UGGGUAAAUCCAGCUGCCU	chr14:31604213-31604488(-)$1	275	100	119	14.3656
GAAUAAAUUAGUCAUUGUU	chr1:19483293-19483520(-)$1	227	73	92	12.8990
GGAGCUGAAAGAGGAGCUC	chr1:245027514-245027764(-)$1	250	196	215	14.0135
GGACGUAGACCCUGACGUC	chr6:144812014-144812262(+)$1	248	178	197	14.0072
AUGAUCCCAACAAAGAUAC	chr5:138661102-138661446(+)$1	344	132	151	14.6721
UGGUGGAGUUGUAACCACU	chr1:35652702-35652951(-)$1	249	194	213	13.4203
GAGGAAUCCCCAUUUUCUU	chrX:152955823-152956064(+)$1	241	45	64	14.3656
ccgucagccauugaugauc	chr17:19091313-19091517(+)$1	204	161	180	13.3136
CUCAGCAGCCACCAGCAAC	chr22:41545777-41546099(+)$1	322	159	178	12.7555
CCAGCUUGUGAGAUGGCAU	chr7:103276709-103276944(-)$1	235	51	70	14.6721

#DB
(((..(........)..))	chr2:232326205-232326473(-)$1	1	159	178	13.4206
))((((........)))).	chr17:19093384-19093592(-)$1	1	180	199	13.3136
(.((((........)))).	chr19:893455-893690(+)$1	1	146	165	14.2803
((.(((........))).)	chr14:21546492-21546748(+)$1	1	76	95	14.7251
(..(((........)))))	chr2:54849382-54849624(+)$1	1	128	147	14.9642
((((((........)))))	chr17:80190708-80190951(+)$1	1	36	55	12.8990
(..(((........)))..	chr5:176516540-176516794(+)$1	1	141	160	14.5175
.(((((........)))))	chr12:112756954-112757265(-)$1	1	18	37	14.0525
.(((.(........)))).	chr21:46929283-46929528(+)$1	1	52	71	14.4257
((((((........)))).	chr16:2015089-2015396(+)$1	1	177	196	14.4144
.(.(((........))).)	chr4:1806517-1806754(+)$1	1	145	164	14.8787
((((((........)))))	chr14:101200385-101200611(+)$1	1	10	29	13.9437
))((((........)))).	chr17:19091317-19091520(+)$1	1	157	176	13.3136
((((((........))).)	chr1:979483-979740(+)$1	1	121	140	14.5860
((((((........)))))	chr21:46888069-46888317(+)$1	1	3	22	13.4203
((.(((........)))..	chr2:159313486-159313829(+)$1	1	233	252	14.8761
((((((........)))))	chr1:8926237-8926458(-)$1	1	188	207	13.4203
..((((........)))).	chr2:133015106-133015364(-)$1	1	159	178	14.2830
((((((........).)))	chr19:51857296-51857633(-)$1	1	164	183	13.8952
((((((........)))))	chr3:184044922-184045214(+)$1	1	46	65	13.4203
((((((........)))))	chr7:2403166-2403450(+)$1	1	138	157	14.2915
(((.((........)).))	chr8:99837539-99837771(-)$1	1	158	177	13.1947
(.((((........)))))	chr1:19487983-19488226(-)$1	1	6	25	14.2547
((..((........))..)	chr17:80193762-80194054(+)$1	1	73	92	12.9533
.(((((........)))))	chr14:21860207-21860446(-)$1	1	22	41	13.4575
((((((........)))))	chr1:19490652-19490888(-)$1	1	76	95	14.2915
((((((........)))))	chr1:67880748-67881031(-)$1	1	100	119	13.4203
))((((........)))).	chr14:102548629-102548883(-)$1	1	79	98	13.1156
((.(((........))).)	chr12:6619566-6619812(+)$1	1	119	138	14.0527
..((((........)))).	chr7:127341134-127341411(+)$1	1	178	197	14.2670
((((((........)))))	chr3:58084337-58084594(+)$1	1	198	217	13.4203
..((((........)))).	chr1:67895721-67896023(-)$1	1	41	60	12.7953
((.(((........)))))	chr20:60903825-60904055(-)$1	1	24	43	14.7543
((((((........)))))	chr6:144745101-144745314(+)$1	1	192	211	14.3656
)))(((........)))((	chr17:37617680-37617971(+)$1	1	204	223	14.1864
((((((........)))))	chr12:26985754-26986012(-)$1	1	163	182	12.8990
(.((((........)))))	chr20:60913242-60913494(-)$1	1	15	34	13.8109
((((((........)))))	chr14:31604213-31604488(-)$1	1	100	119	14.3656
((((((........)))))	chr1:19483293-19483520(-)$1	1	73	92	12.8990
((((((........)))))	chr1:245027514-245027764(-)$1	1	196	215	14.0135
)(((((........)))))	chr6:144812014-144812262(+)$1	1	178	197	14.0072
...(((........)))..	chr5:138661102-138661446(+)$1	1	132	151	14.6721
((((((........)))))	chr1:35652702-35652951(-)$1	1	194	213	13.4203
((((((........)))))	chrX:152955823-152956064(+)$1	1	45	64	14.3656
))((((........)))).	chr17:19091313-19091517(+)$1	1	161	180	13.3136
((..((........))...	chr22:41545777-41546099(+)$1	1	159	178	12.7555
...(((........)))..	chr7:103276709-103276944(-)$1	1	51	70	14.6721

#PSSM
e : 0.14	f : 0.14	c : 0.10	g : 0.10	h : 0.08	i : 0.08	d : 0.06	[ : 0.06	" : 0.04	b : 0.04	# : 0.04	) : 0.02	( : 0.02	= : 0.02	
e : 0.23	f : 0.14	c : 0.10	h : 0.08	g : 0.08	[ : 0.06	i : 0.06	! : 0.04	" : 0.04	# : 0.04	a : 0.02	b : 0.02	( : 0.02	d : 0.02	
d : 0.25	e : 0.17	f : 0.12	[ : 0.10	! : 0.08	h : 0.06	g : 0.06	c : 0.04	i : 0.04	# : 0.04	
c : 0.25	d : 0.23	e : 0.12	f : 0.12	! : 0.06	h : 0.06	g : 0.06	i : 0.04	[ : 0.02	
d : 0.23	c : 0.23	e : 0.12	f : 0.12	h : 0.06	b : 0.06	g : 0.06	i : 0.04	! : 0.02	[ : 0.02	
d : 0.23	c : 0.23	f : 0.12	e : 0.10	a : 0.06	h : 0.06	b : 0.06	g : 0.06	i : 0.04	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.23	c : 0.23	f : 0.12	e : 0.10	a : 0.06	h : 0.06	b : 0.06	g : 0.06	i : 0.04	
c : 0.25	d : 0.23	f : 0.12	e : 0.10	h : 0.06	b : 0.06	g : 0.06	i : 0.04	2 : 0.02	] : 0.02	
c : 0.25	d : 0.23	e : 0.12	f : 0.12	h : 0.06	g : 0.06	2 : 0.04	i : 0.04	] : 0.02	> : 0.02	
d : 0.23	e : 0.19	f : 0.14	] : 0.08	g : 0.08	h : 0.06	3 : 0.06	2 : 0.04	i : 0.04	c : 0.02	> : 0.02	
e : 0.23	f : 0.17	: : 0.08	] : 0.08	g : 0.08	3 : 0.08	h : 0.06	2 : 0.04	i : 0.04	b : 0.04	a : 0.02	c : 0.02	> : 0.02	

#score	653.0677166725366
#seq	47
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_transcript_m1_run2.txt

#BEAR
!!ccc"""bbeeeee[aooooooa]eeeee]bb333ccc]	chr19:16188128-16188384(+)$1	256	161	201	15.7242
ggggg!!ccc[eeeee[aooooooa]eeeee]ccc]gggg	chr20:31162485-31162835(-)$1	350	96	136	16.2091
ccccca[ffffff[ddddoooooodddd]ffffff]a]cc	chr13:114163580-114163838(+)$1	258	25	65	14.2951
eeeee[ccc!!dddd[bboooooobbddddccc22eeeee	chr1:36623021-36623286(+)$1	265	25	65	15.1765
eeee[eeeeebb[bb[bboooooobb]bb]bb]eeeee33	chr5:177632006-177632266(+)$1	260	38	78	13.8959
::===========[a!!aooooooa22a]===========	chr19:55645457-55645691(-)$1	234	81	121	17.3093
d[eeeeebbeeeee[cccooooooccc333eeeee]bb33	chr16:88961915-88962155(-)$1	240	21	61	15.4551
##============[ddddmmmmdddd]============	chr3:14989073-14989335(-)$1	262	6	46	14.2918
a"""eeeee[bb####bboooooobbbb]eeeee333a]d	chr6:125475798-125476094(+)$1	296	43	83	16.1390
dddacccccc!!ffffffooooooffffffccc]ccc]a]	chr19:1411409-1411663(+)$1	254	129	169	14.2963
ffffff####bbccc[bboooooobb]ccc22bb22ffff	chr20:49227352-49227610(-)$1	258	98	138	15.8524
""ggggggg!!gggggggooooooggggggg]ggggggg2	chr19:892121-892374(-)$1	253	93	133	17.2509
fffff"""dddd"""cccnnnnnccc22dddd333fffff	chr16:88572078-88572331(+)$1	253	10	50	13.3463
!!ffffffccc[a[cccooooooccc]a]ccc]ffffff]	chr19:5048548-5048821(+)$1	273	30	70	15.0934
bb:ggggggg[gggggggooooooggggggg]gggggggG	chr11:638054-638316(+)$1	262	139	179	14.9225
ddd!!a[bb[eeeee[bboooooobbeeeeebba]dddd]	chr3:33137971-33138291(-)$1	320	235	275	14.5805
hhhhhh"""ggggggg[aooooooa]ggggggghhhhhhh	chr6:42751009-42751232(+)$1	223	54	94	14.9764
a[ccc!!dddd[bb!!ccclllccc22bb]dddd22ccc]	chr17:38226034-38226287(+)$1	253	2	42	12.9056
c[ggggggg!!a[ccc!!bbmmmmbb22ccc22a22gggg	chr1:116917110-116917366(+)$1	256	34	74	13.7072
[==========[bb!!bboooooobb22bb==========	chr21:45374081-45374350(+)$1	269	7	47	18.9860
cc[eeeee"""ccc[cccooooooccc]ccc4444eeeee	chr20:57467662-57467886(+)$1	224	5	45	16.6631
f[bb####ffffff[a[bbnnnnnbba]ffffff333bb]	chr17:27718165-27718431(+)$1	266	46	86	13.2073
:ccc"""eeeee[a[cccooooooccca]eeeee333ccc	chrX:129216538-129216790(-)$1	252	1	41	17.1013
=============!!cccooooooccc333==========	chr1:212783224-212783484(+)$1	260	176	216	20.0804
::ccc[a[ggggggg[bboooooobbggggggg]a]ccc:	chr19:45600422-45600739(+)$1	317	216	256	15.4946
ccc[iiiiiiiii"""bboooooobb333iiiiiiiii22	chr1:27884108-27884396(-)$1	288	68	108	19.0798
e[ccc!!a[a[ccc!!bboooooobb22ccca]a22ccc]	chr17:3859948-3860215(-)$1	267	117	157	19.7569
iiiiiiiii[eeeee[bboooooobb22eeeee22iiiii	chr7:151216081-151216339(-)$1	258	0	40	17.6737
d[ccc[eeeee[a[ddddoooooodddd]aeeeee333cc	chr22:19704769-19705094(+)$1	325	234	274	15.3737
cciiiiiiiii!!cccbboooooobb]ccc333iiiiiii	chr19:2136460-2136713(-)$1	253	116	156	18.5922
iiiiiiii!!ccc"""cccmmmmccc333ccc333iiiii	chr12:122237313-122237571(-)$1	258	57	97	15.6309
e[ccc[dddd"""a!!cccnnnnnccc22a]ddddccc]e	chr7:5635763-5636035(+)$1	272	43	83	13.2074
==============!!cccmmmmccc]=============	chr9:139614470-139614716(+)$1	246	24	64	16.0299
cccccc[ccc[bb!!cccmmmmcccbb]ccc]ccc]ccc]	chr22:23540385-23540651(+)$1	266	90	130	13.3285
iiii[ggggggg[bb[annnnna]bb]ggggggg333iii	chr9:117138053-117138326(-)$1	273	136	176	14.7389
dddd!!ccc####ddddoooooodddd4444ccc22dddd	chr7:120796823-120797076(+)$1	253	182	222	14.1227
[eeeee####ggggggg!!bblllbb22ggggggg22eee	chr21:45734382-45734637(+)$1	255	134	174	12.8454
::bb####ggggggg[bboooooobb]ggggggg333bbE	chr21:45565086-45565340(+)$1	254	202	242	15.5654
=[a[eeeee"""a"""ddddllldddd333a333eeeee]	chr1:2198998-2199263(+)$1	265	57	97	12.8305
a[dddd[a[dddd!!cccooooooccc333dddd]a]ddd	chr7:932931-933182(+)$1	251	4	44	16.0921
bb[ffffff!!gggggggooooooggggggg22ffffff]	chr9:139718519-139718799(+)$1	280	16	56	14.9050
ff!!==========[aooooooa]==========22ffff	chr16:88730063-88730369(+)$1	306	103	143	16.4889
eeedddd[dddd[bb[bboooooobb]bb]dddd22dddd	chr3:47458600-47458891(-)$1	291	61	101	14.0755
gggg####bb[a[ccc[bbnnnnnbb]ccc]a]bb4444g	chr7:106809429-106809705(+)$1	276	118	158	13.6130
a"""bb!!eeeee!!cccooooooccc22eeeee22bb]a	chr19:944256-944546(+)$1	290	182	222	16.3610
i[ccc!!ccc[a[cccooooooccc]a]cccccc]iiiii	chr5:154136415-154136688(+)$1	273	206	246	15.8563
!ccc$$$$$==========nnnnn==========22ccc]	chr11:47377368-47377628(-)$1	260	16	56	15.3796
eeee!!ggggggg!!cccooooooccc]ggggggg22eee	chr22:50021614-50021901(-)$1	287	25	65	17.6011
!bb[dddd####ccc[bboooooobb]ccc22dddd]bb2	chr13:114754482-114754739(-)$1	257	168	208	14.9512
b[ccc[dddd[dddd[aooooooa]dddddddd]ccc]bb	chr3:128213468-128213708(+)$1	240	122	162	13.1561
[ccc"""ggggggg[cccnnnnnccc22ggggggg4444c	chr16:88771467-88771753(-)$1	286	185	225	15.4644
ggggg!!ccc[ccc[cccooooooccc]ccc22ccc22gg	chr11:67039251-67039479(+)$1	228	64	104	17.3947
ff[a[bb####gggggggooooooggggggg4444bb]af	chr19:2050490-2050730(-)$1	240	137	177	15.6144
iiiii####ccc!!ddddmmmmdddd22ccc]iiiiiiii	chr20:55970192-55970458(+)$1	266	193	233	13.3273

#otherMatches

#Seq PSSM
UCUGAAAAAGGAGGGAGUUUCACCAUCCUCUCUGCAUCAU	chr19:16188128-16188384(+)$1	256	161	201	15.7242
CCUGGGAUUCGUGGGUGGGAAGAGUGGUUUAGGAAACCGG	chr20:31162485-31162835(-)$1	350	96	136	16.2091
CCCCCUGGAGCUUCCUGUGUUAGGAUGGCAGGCUUGGUGG	chr13:114163580-114163838(+)$1	258	25	65	14.2951
UGCUCAGGACUUCUGCAAAUCCCAUUCGGAUCUGGGAGCA	chr1:36623021-36623286(+)$1	265	25	65	15.1765
GGGGUAGGUgcggccgcgggcggacgggggcgccgccUUU	chr5:177632006-177632266(+)$1	260	38	78	13.8959
cucucugggcccaaguuccucuccguCCCUGGGCCUAGGG	chr19:55645457-55645691(-)$1	234	81	121	17.3093
CUGGCCUCCCACAGCCCCUGCAGUGGGUAUCUGUGAGGCC	chr16:88961915-88962155(-)$1	240	21	61	15.4551
agcccgggcUCCCGGUGUCggcggauggcgggagcccggg	chr3:14989073-14989335(-)$1	262	6	46	14.2918
GGGAAUUCCGAUGGAAUCGUUCAAGAAUGGGGGUAAACGG	chr6:125475798-125476094(+)$1	296	43	83	16.1390
UGGCUCGCCUUGGCUCCAAUGGUCUGGAGCAGGCCGGUGU	chr19:1411409-1411663(+)$1	254	129	169	14.2963
GCAGGGGCAAGCGGGGCAGGUGGGUGGCCCAGGCAACUUU	chr20:49227352-49227610(-)$1	258	98	138	15.8524
AAAGACUUUUAGAGGCUUGUGGCGGAGCCUUGGGGGUCUG	chr19:892121-892374(-)$1	253	93	133	17.2509
UCAGCUCCCGGGAACGCAGCCCAUGCCGCCUGUCUGCUGA	chr16:88572078-88572331(+)$1	253	10	50	13.3463
GGCCCUUCCCUGGGUUGGAGUUGUAAGCGGGGAGAGGGGG	chr19:5048548-5048821(+)$1	273	30	70	15.0934
CCACACCAGGUCUGGCCCUCGAGUGGGUCGGCCUUGGUGC	chr11:638054-638316(+)$1	262	139	179	14.9225
CCCUUGCAGUGGGAACAUUGGGUUAUUUCCCCUCUGGGUG	chr3:33137971-33138291(-)$1	320	235	275	14.5805
GCCAGAAGAGAUGUGCGGCUGGGACGGCGCAUUUUUGGCC	chr6:42751009-42751232(+)$1	223	54	94	14.9764
UGGGGGAUGGAUGUGACCUGGGAGGAGACCUCCAGACCUG	chr17:38226034-38226287(+)$1	253	2	42	12.9056
AGAGCGGCGCGGAGCGUGGUGGGAAUAUCGUCACAACGCC	chr1:116917110-116917366(+)$1	256	34	74	13.7072
GCACCUUCCUCACCGUCACCCUUCUGCAGGGAGGGAGGUG	chr21:45374081-45374350(+)$1	269	7	47	18.9860
UUGGUGCGUUUCGGGCAGGACCGACUGACUGUGUGUGCGC	chr20:57467662-57467886(+)$1	224	5	45	16.6631
CCGGUUUUAAGGGGCGAGAGCAAUUCCAUUCCUUUUUCCU	chr17:27718165-27718431(+)$1	266	46	86	13.2073
ACCGAGCCCAGGGGACCAAAGACGUGGCGCCUGGAAGUGG	chrX:129216538-129216790(-)$1	252	1	41	17.1013
GUGGGGGAAAGGGGACUUUUCUGCAGGGCAUCUUUUCCCU	chr1:212783224-212783484(+)$1	260	176	216	20.0804
UGCCUAGGCCAGGGGAUGGAGGAGCGCCCCUGGGUGAGGA	chr19:45600422-45600739(+)$1	317	216	256	15.4946
GUGGUACCCGGAAGUAUGAAUAUGCAGGAUUCUGGGUGUG	chr1:27884108-27884396(-)$1	288	68	108	19.0798
GGGguaucagucagguucagcuuggauacugcagcaaucg	chr17:3859948-3860215(-)$1	267	117	157	19.7569
gcccuccgcgggccgggcgggcagguggcggccgggcgga	chr7:151216081-151216339(-)$1	258	0	40	17.6737
AAGCACGUGGGAGAUGGGUCCCAUCCCACCCCCACCCCUG	chr22:19704769-19705094(+)$1	325	234	274	15.3737
CACGAGGUGCAUUUUUCAGCACCAUGUAAAUGUUGCAUUU	chr19:2136460-2136713(-)$1	253	116	156	18.5922
GCAUACGAGAGGAUCCACUUGCAAGUAUUUCCCAGUUGUG	chr12:122237313-122237571(-)$1	258	57	97	15.6309
AGGCCAUUUUGGACGGGCCUGCGUGGCAAGGGGGAGGCGU	chr7:5635763-5636035(+)$1	272	43	83	13.2074
ucuggggcuccgggugcagggggcuggucugggguuccgg	chr9:139614470-139614716(+)$1	246	24	64	16.0299
UUCCGGGGCAGGGCCACAUCUUUGUCCGUGUGCCGAGGAG	chr22:23540385-23540651(+)$1	266	90	130	13.3285
AGGGAGGGUGUACCUGGAGCCCUGAGAUACACCCAAGCCC	chr9:117138053-117138326(-)$1	273	136	176	14.7389
gauauaacagaaaaaguugaauugcuugauauguauuguc	chr7:120796823-120797076(+)$1	253	182	222	14.1227
GCCUGGAAUGCCGCCCUCUGGUUCCCUUGGGGUGGAGUUG	chr21:45734382-45734637(+)$1	255	134	174	12.8454
CAGCGUAAGGGGAUUUCUAAAGCAGGCAAUCCCUGUAGCC	chr21:45565086-45565340(+)$1	254	202	242	15.5654
UCGGAAGCUGGGCAGUGGCCAGAGGCCUGGGAAAGGCUUG	chr1:2198998-2199263(+)$1	265	57	97	12.8305
ggcgcgguggugugugcaggugaguguugggcgcgggcgu	chr7:932931-933182(+)$1	251	4	44	16.0921
GUGUCACUAAAAGGUUCAGUGAGGUGGGCUUGAUGGUGGG	chr9:139718519-139718799(+)$1	280	16	56	14.9050
CUGAGGGGAGGGCGGGUCGCGCUGUGCCCUCCUUGAAGCU	chr16:88730063-88730369(+)$1	306	103	143	16.4889
CCUCAUCGUGGUGGGGCGGAGCAGCGGCCGGCUGGAGGUG	chr3:47458600-47458891(-)$1	291	61	101	14.0755
GUCGGAGAGGGGGUACGAGAGCUGCUGGUGGUGUUGUCGU	chr7:106809429-106809705(+)$1	276	118	158	13.6130
GUCUGCCACGGCCUCAGCCCCGUUGCUUCGGUCGAUGCCC	chr19:944256-944546(+)$1	290	182	222	16.3610
ggcgcuggggguggcaggagggugcgggcccgcggcgcgg	chr5:154136415-154136688(+)$1	273	206	246	15.8563
agucugugagcacgugcauugugugugcaugugugugaca	chr11:47377368-47377628(-)$1	260	16	56	15.3796
CUCUGUCGGGUGGCAGAUGUGGGGGUCCCUGCCUGUAGGA	chr22:50021614-50021901(-)$1	287	25	65	17.6011
agugaucgguggacugacagaugggugagugauggugaug	chr13:114754482-114754739(-)$1	257	168	208	14.9512
gacugaagugcagcgguucaaucagcgcuuacugcagccu	chr3:128213468-128213708(+)$1	240	122	162	13.1561
AUGCAGAGCUGCCUUCAUUACCUGUGUCAGGCAGCACAGG	chr16:88771467-88771753(-)$1	286	185	225	15.4644
UUAAGAAGCCCCAGGGGACUUCCUUCUGCUGCUGGCACCU	chr11:67039251-67039479(+)$1	228	64	104	17.3947
CCAUGGCCGCCGGGUCCUUCCUCCAGGACCCCCAAGUGAG	chr19:2050490-2050730(-)$1	240	137	177	15.6144
GGGGACGGUGGGAAGGGCCCUGGCCCGACCUUUCCCUUGC	chr20:55970192-55970458(+)$1	266	193	233	13.3273

#DB
..(((...(((((((.(......).))))).))...))).	chr19:16188128-16188384(+)$1	1	161	201	15.7242
(((((..(((.(((((.(......).))))).))).))))	chr20:31162485-31162835(-)$1	1	96	136	16.2091
((((((.((((((.((((......)))).)))))).).))	chr13:114163580-114163838(+)$1	1	25	65	14.2951
(((((.(((..((((.((......)))))))))..)))))	chr1:36623021-36623286(+)$1	1	25	65	15.1765
((((.(((((((.((.((......)).)).)).)))))..	chr5:177632006-177632266(+)$1	1	38	78	13.8959
..(((((((((((.(..(......)..).)))))))))))	chr19:55645457-55645691(-)$1	1	81	121	17.3093
(.((((((((((((.(((......)))...))))).))..	chr16:88961915-88962155(-)$1	1	21	61	15.4551
..((((((((((((.((((....)))).))))))))))))	chr3:14989073-14989335(-)$1	1	6	46	14.2918
(...(((((.((....((......)))).)))))...).)	chr6:125475798-125476094(+)$1	1	43	83	16.1390
((((((((((..((((((......))))))))).))).).	chr19:1411409-1411663(+)$1	1	129	169	14.2963
((((((....(((((.((......)).)))..))..))))	chr20:49227352-49227610(-)$1	1	98	138	15.8524
..(((((((..(((((((......))))))).))))))).	chr19:892121-892374(-)$1	1	93	133	17.2509
(((((...((((...(((.....)))..))))...)))))	chr16:88572078-88572331(+)$1	1	10	50	13.3463
..(((((((((.(.(((......))).).))).)))))).	chr19:5048548-5048821(+)$1	1	30	70	15.0934
)).(((((((.(((((((......))))))).))))))))	chr11:638054-638316(+)$1	1	139	179	14.9225
(((..(.((.(((((.((......)))))))))).)))).	chr3:33137971-33138291(-)$1	1	235	275	14.5805
((((((...(((((((.(......).))))))))))))))	chr6:42751009-42751232(+)$1	1	54	94	14.9764
(.(((..((((.((..(((...)))..)).))))..))).	chr17:38226034-38226287(+)$1	1	2	42	12.9056
(.(((((((..(.(((..((....))..)))..)..))))	chr1:116917110-116917366(+)$1	1	34	74	13.7072
.((((((((((.((..((......))..))))))))))))	chr21:45374081-45374350(+)$1	1	7	47	18.9860
((.(((((...(((.(((......))).)))....)))))	chr20:57467662-57467886(+)$1	1	5	45	16.6631
(.((....((((((.(.((.....))).))))))...)).	chr17:27718165-27718431(+)$1	1	46	86	13.2073
.(((...(((((.(.(((......)))).)))))...)))	chrX:129216538-129216790(-)$1	1	1	41	17.1013
(((((((((((((..(((......)))...))))))))))	chr1:212783224-212783484(+)$1	1	176	216	20.0804
..(((.(.(((((((.((......))))))))).).))).	chr19:45600422-45600739(+)$1	1	216	256	15.4946
(((.(((((((((...((......))...)))))))))..	chr1:27884108-27884396(-)$1	1	68	108	19.0798
(.(((..(.(.(((..((......))..)))).)..))).	chr17:3859948-3860215(-)$1	1	117	157	19.7569
(((((((((.(((((.((......))..)))))..)))))	chr7:151216081-151216339(-)$1	1	0	40	17.6737
(.(((.(((((.(.((((......)))).))))))...))	chr22:19704769-19705094(+)$1	1	234	274	15.3737
(((((((((((..(((((......)).)))...)))))))	chr19:2136460-2136713(-)$1	1	116	156	18.5922
((((((((..(((...(((....)))...)))...)))))	chr12:122237313-122237571(-)$1	1	57	97	15.6309
(.(((.((((...(..(((.....)))..).))))))).)	chr7:5635763-5636035(+)$1	1	43	83	13.2074
((((((((((((((..(((....))).)))))))))))))	chr9:139614470-139614716(+)$1	1	24	64	16.0299
((((((.(((.((..(((....))))).))).))).))).	chr22:23540385-23540651(+)$1	1	90	130	13.3285
((((.(((((((.((.(.....).)).)))))))...)))	chr9:117138053-117138326(-)$1	1	136	176	14.7389
((((..(((....((((......))))....)))..))))	chr7:120796823-120797076(+)$1	1	182	222	14.1227
.(((((....(((((((..((...))..)))))))..)))	chr21:45734382-45734637(+)$1	1	134	174	12.8454
..((....(((((((.((......)).)))))))...)))	chr21:45565086-45565340(+)$1	1	202	242	15.5654
(.(.(((((...(...((((...))))...)...))))).	chr1:2198998-2199263(+)$1	1	57	97	12.8305
(.((((.(.((((..(((......)))...)))).).)))	chr7:932931-933182(+)$1	1	4	44	16.0921
((.((((((..(((((((......)))))))..)))))).	chr9:139718519-139718799(+)$1	1	16	56	14.9050
((..((((((((((.(......).))))))))))..))))	chr16:88730063-88730369(+)$1	1	103	143	16.4889
)))((((.((((.((.((......)).)).))))..))))	chr3:47458600-47458891(-)$1	1	61	101	14.0755
((((....((.(.(((.((.....)).))).).))....)	chr7:106809429-106809705(+)$1	1	118	158	13.6130
(...((..(((((..(((......)))..)))))..)).)	chr19:944256-944546(+)$1	1	182	222	16.3610
(.(((..(((.(.(((......))).).)))))).)))))	chr5:154136415-154136688(+)$1	1	206	246	15.8563
.(((.....((((((((((.....))))))))))..))).	chr11:47377368-47377628(-)$1	1	16	56	15.3796
((((..(((((((..(((......))).)))))))..)))	chr22:50021614-50021901(-)$1	1	25	65	17.6011
.((.((((....(((.((......)).)))..)))).)).	chr13:114754482-114754739(-)$1	1	168	208	14.9512
(.(((.((((.((((.(......).)))))))).))).))	chr3:128213468-128213708(+)$1	1	122	162	13.1561
.(((...(((((((.(((.....)))..)))))))....)	chr16:88771467-88771753(-)$1	1	185	225	15.4644
(((((..(((.(((.(((......))).)))..)))..))	chr11:67039251-67039479(+)$1	1	64	104	17.3947
((.(.((....(((((((......)))))))....)).))	chr19:2050490-2050730(-)$1	1	137	177	15.6144
(((((....(((..((((....))))..))).))))))))	chr20:55970192-55970458(+)$1	1	193	233	13.3273

#PSSM
c : 0.11	e : 0.11	d : 0.09	f : 0.09	i : 0.09	! : 0.07	: : 0.07	a : 0.07	g : 0.05	b : 0.05	[ : 0.05	= : 0.05	# : 0.01	" : 0.01	h : 0.01	
[ : 0.20	c : 0.14	e : 0.09	f : 0.07	i : 0.07	g : 0.05	: : 0.05	" : 0.05	d : 0.05	b : 0.05	= : 0.05	! : 0.03	# : 0.01	h : 0.01	
c : 0.25	e : 0.11	g : 0.09	= : 0.09	i : 0.09	d : 0.07	f : 0.05	[ : 0.05	b : 0.05	" : 0.03	: : 0.01	h : 0.01	a : 0.01	! : 0.01	
c : 0.24	g : 0.11	e : 0.11	= : 0.09	i : 0.09	f : 0.07	[ : 0.05	d : 0.05	" : 0.03	a : 0.03	! : 0.03	b : 0.03	h : 0.01	
c : 0.20	e : 0.11	= : 0.11	g : 0.09	i : 0.09	f : 0.07	[ : 0.05	! : 0.05	# : 0.05	d : 0.05	" : 0.03	h : 0.01	b : 0.01	$ : 0.01	
! : 0.12	e : 0.11	= : 0.11	[ : 0.09	" : 0.07	g : 0.07	# : 0.07	i : 0.07	f : 0.05	d : 0.05	a : 0.03	c : 0.03	b : 0.03	h : 0.01	$ : 0.01	
! : 0.11	e : 0.11	= : 0.11	# : 0.11	" : 0.09	g : 0.09	[ : 0.07	i : 0.07	d : 0.07	c : 0.05	f : 0.03	a : 0.01	$ : 0.01	b : 0.01	
c : 0.12	# : 0.12	e : 0.11	= : 0.11	g : 0.11	d : 0.07	i : 0.07	" : 0.05	f : 0.05	b : 0.03	[ : 0.03	a : 0.03	! : 0.01	$ : 0.01	
c : 0.14	g : 0.14	e : 0.11	= : 0.11	# : 0.09	d : 0.09	b : 0.07	f : 0.05	i : 0.05	" : 0.03	[ : 0.03	! : 0.01	$ : 0.01	
c : 0.12	= : 0.12	g : 0.12	d : 0.11	! : 0.09	e : 0.09	# : 0.09	[ : 0.05	b : 0.03	f : 0.03	" : 0.03	i : 0.03	a : 0.01	
[ : 0.14	e : 0.12	= : 0.12	g : 0.12	! : 0.09	d : 0.07	b : 0.05	c : 0.05	" : 0.05	# : 0.05	f : 0.03	i : 0.03	
g : 0.20	e : 0.12	= : 0.11	d : 0.09	c : 0.09	b : 0.07	[ : 0.07	a : 0.05	f : 0.03	! : 0.03	" : 0.03	# : 0.03	i : 0.01	
g : 0.18	[ : 0.12	e : 0.11	= : 0.11	c : 0.11	f : 0.05	d : 0.05	a : 0.05	b : 0.05	# : 0.03	" : 0.03	! : 0.03	i : 0.01	
c : 0.16	g : 0.16	! : 0.11	e : 0.09	b : 0.09	[ : 0.07	= : 0.07	" : 0.07	d : 0.05	f : 0.03	a : 0.03	# : 0.01	
! : 0.18	[ : 0.14	g : 0.14	c : 0.12	d : 0.11	e : 0.07	" : 0.07	b : 0.05	a : 0.01	# : 0.01	f : 0.01	= : 0.01	
c : 0.29	[ : 0.22	! : 0.11	g : 0.11	d : 0.09	" : 0.05	a : 0.03	e : 0.01	# : 0.01	f : 0.01	= : 0.01	
c : 0.29	b : 0.25	d : 0.11	g : 0.09	[ : 0.07	a : 0.05	! : 0.03	o : 0.03	f : 0.01	= : 0.01	
b : 0.29	c : 0.27	o : 0.11	d : 0.09	g : 0.07	a : 0.05	! : 0.03	f : 0.01	n : 0.01	= : 0.01	
o : 0.70	c : 0.07	n : 0.05	b : 0.05	d : 0.03	m : 0.03	! : 0.01	= : 0.01	
o : 0.70	n : 0.12	m : 0.09	b : 0.03	l : 0.01	d : 0.01	
o : 0.70	n : 0.12	m : 0.11	l : 0.03	b : 0.01	
o : 0.70	n : 0.12	m : 0.11	l : 0.05	
o : 0.66	n : 0.11	m : 0.07	c : 0.05	a : 0.03	l : 0.03	d : 0.01	
o : 0.59	c : 0.14	d : 0.07	n : 0.07	a : 0.03	] : 0.03	m : 0.01	l : 0.01	
b : 0.35	c : 0.31	d : 0.11	g : 0.07	a : 0.05	] : 0.03	= : 0.03	f : 0.01	
b : 0.37	c : 0.25	d : 0.12	g : 0.07	] : 0.05	2 : 0.03	= : 0.03	e : 0.01	f : 0.01	
] : 0.18	2 : 0.18	c : 0.16	d : 0.12	g : 0.11	e : 0.05	b : 0.03	a : 0.03	3 : 0.03	= : 0.03	f : 0.01	
2 : 0.18	g : 0.14	] : 0.12	3 : 0.11	d : 0.07	b : 0.07	c : 0.07	e : 0.05	a : 0.05	= : 0.05	f : 0.01	4 : 0.01	
c : 0.20	g : 0.20	] : 0.11	3 : 0.11	e : 0.07	b : 0.07	= : 0.07	d : 0.05	f : 0.03	2 : 0.03	4 : 0.01	
c : 0.24	g : 0.20	e : 0.12	= : 0.09	3 : 0.07	f : 0.05	d : 0.05	] : 0.05	a : 0.03	b : 0.01	i : 0.01	4 : 0.01	
c : 0.20	g : 0.20	e : 0.14	= : 0.12	d : 0.09	] : 0.05	f : 0.03	2 : 0.03	b : 0.01	i : 0.01	3 : 0.01	4 : 0.01	a : 0.01	
= : 0.12	g : 0.12	c : 0.11	e : 0.11	d : 0.11	] : 0.09	2 : 0.09	b : 0.05	f : 0.03	4 : 0.03	a : 0.03	3 : 0.03	i : 0.01	
g : 0.16	= : 0.12	c : 0.11	e : 0.11	d : 0.11	] : 0.07	3 : 0.07	b : 0.05	2 : 0.05	f : 0.03	4 : 0.03	i : 0.03	
= : 0.12	g : 0.12	e : 0.11	c : 0.09	d : 0.09	3 : 0.07	f : 0.07	] : 0.05	a : 0.05	i : 0.05	2 : 0.03	b : 0.03	4 : 0.03	h : 0.01	
2 : 0.20	3 : 0.14	c : 0.09	= : 0.09	g : 0.09	e : 0.07	f : 0.05	] : 0.05	i : 0.05	4 : 0.03	d : 0.03	h : 0.01	a : 0.01	b : 0.01	
2 : 0.20	3 : 0.12	i : 0.11	] : 0.09	= : 0.09	e : 0.07	c : 0.07	f : 0.05	g : 0.03	d : 0.03	4 : 0.03	h : 0.01	a : 0.01	b : 0.01	
c : 0.16	3 : 0.11	i : 0.11	= : 0.09	f : 0.09	g : 0.07	e : 0.07	b : 0.05	d : 0.05	2 : 0.05	] : 0.03	4 : 0.03	a : 0.01	h : 0.01	
c : 0.14	i : 0.12	e : 0.11	= : 0.09	b : 0.09	f : 0.09	g : 0.07	] : 0.07	d : 0.07	4 : 0.03	a : 0.01	h : 0.01	3 : 0.01	2 : 0.01	
c : 0.16	i : 0.11	g : 0.09	e : 0.09	= : 0.09	f : 0.09	d : 0.07	b : 0.07	] : 0.05	3 : 0.03	a : 0.03	4 : 0.03	h : 0.01	2 : 0.01	
] : 0.20	i : 0.11	e : 0.09	= : 0.09	g : 0.07	c : 0.07	d : 0.07	f : 0.07	2 : 0.05	3 : 0.03	G : 0.01	h : 0.01	: : 0.01	E : 0.01	a : 0.01	b : 0.01	

#score	836.0200203783388
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_CDS_m2_run2.txt

#BEAR
:fffffftttttttttttffffff	chr6:110423191-110423458(-)$1	267	225	249	20.7771
gggggguuuuuuuuuuuugggggg	chr17:36891502-36891723(-)$1	221	61	85	23.8734
eeeeewwwwwwwwwwwwwweeeee	chr7:104753145-104753426(+)$1	281	244	268	22.1584
gggggguuuuuuuuuuuugggggg	chr9:111853238-111853506(-)$1	268	51	75	23.8734
ccccccyyyyyyyyyyyyyyyycc	chr7:138968680-138968956(+)$1	276	66	90	20.9003
ceeeeevvvvvvvvvvvvveeeee	chr17:7416327-7416622(+)$1	295	161	185	23.2891
[ddddyyyyyyyyyyyyyyyyddd	chr22:32232752-32233073(+)$1	321	139	163	20.4779
!bbcccwwwwwwwwwwwwwwccc]	chr3:171965230-171965503(+)$1	273	70	94	22.1403
ddd[bbuuuuuuuuuuuubbdddd	chr21:46935567-46935846(-)$1	279	116	140	22.3667
ggggggvvvvvvvvvvvvvggggg	chrX:70767602-70767876(+)$1	274	30	54	23.6287
ccddddtttttttttttdddd]cc	chr1:169509894-169510177(-)$1	283	231	255	21.4236
gggggggtttttttttttgggggg	chr10:118680885-118681128(-)$1	243	79	103	22.5528
ee!!ccctttttttttttccc22e	chr19:56813324-56813640(-)$1	316	206	230	22.8416
eeeeewwwwwwwwwwwwwweeeee	chr19:7934896-7935165(-)$1	269	221	245	22.1584
ffffffwwwwwwwwwwwwwwffff	chr2:242694658-242694933(+)$1	275	40	64	21.6360
c[eeeeettttttttttteeeee]	chr16:28847934-28848168(+)$1	234	136	160	22.4301
ffffffwwwwwwwwwwwwwwffff	chr12:49445516-49445768(-)$1	252	119	143	21.6360
=======ttttttttttt======	chr17:7311438-7311679(+)$1	241	73	97	22.7427
ccc[bbtttttttttttbb]cccc	chr12:49445298-49445562(-)$1	264	74	98	21.7624
ccddddvvvvvvvvvvvvvdddd]	chr2:204305292-204305543(-)$1	251	215	239	22.7588
bb!!ccctttttttttttccc22b	chr20:2816614-2816870(-)$1	256	90	114	22.0535
c!!cccuuuuuuuuuuuuccc22c	chr22:42263047-42263288(+)$1	241	147	171	23.9938
eeeeeyyyyyyyyyyyyyyyyeee	chr17:37627552-37627865(+)$1	313	280	304	21.0442
##ddddtttttttttttdddd333	chr1:21329105-21329402(-)$1	297	96	120	21.7665
[eeeeeyyyyyyyyyyyyyyyyee	chr16:30748617-30748883(+)$1	266	4	28	20.8959
[cccbbtttttttttttbb]ccc]	chr20:43133349-43133579(-)$1	230	113	137	21.9970
gggggguuuuuuuuuuuugggggg	chr5:140953425-140953644(-)$1	219	95	119	23.8734
[eeeeeuuuuuuuuuuuueeeee]	chr17:73235893-73236180(-)$1	287	4	28	23.7449
hh[cccwwwwwwwwwwwwwwccc3	chr19:56206586-56206912(+)$1	326	70	94	22.1448
=======ttttttttttt======	chr19:50154033-50154274(+)$1	241	124	148	22.7427
eee[bbuuuuuuuuuuuubbeeee	chr17:6917539-6917793(+)$1	254	186	210	23.2051
[bb[bbvvvvvvvvvvvvvbbbbe	chr15:78730526-78730790(+)$1	264	8	32	21.8403
eeeee[attttttttttta]eeee	chr10:101379908-101380225(-)$1	317	206	230	23.0911
[eeeeevvvvvvvvvvvvveeeee	chr1:245133935-245134253(+)$1	318	143	167	23.4529
fffcccuuuuuuuuuuuuccc22f	chr6:33166999-33167244(-)$1	245	93	117	23.6751
"""bb[attttttttttta]bb]d	chr16:57713920-57714288(+)$1	368	332	356	22.0072
[cccwwwwwwwwwwwwwwccceee	chr19:2248437-2248697(+)$1	260	16	40	22.1582
c!!cccuuuuuuuuuuuuccc22c	chr22:42263032-42263247(+)$1	215	162	186	23.9938
gggggauuuuuuuuuuuua]gggg	chr12:7045913-7046164(+)$1	251	159	183	24.1582
gggggguuuuuuuuuuuugggggg	chr19:40487097-40487370(+)$1	273	148	172	23.8734
ffffffuuuuuuuuuuuuffffff	chr19:56125150-56125473(+)$1	323	250	274	22.8553
eeeeevvvvvvvvvvvvveeeee]	chr16:29822317-29822568(+)$1	251	80	104	22.9331
[cccwwwwwwwwwwwwwwccceee	chr5:175957552-175957796(-)$1	244	135	159	22.1582
$$$cccuuuuuuuuuuuuccc666	chrX:47074215-47074474(+)$1	259	138	162	22.2262
:eeeeettttttttttteeeee:c	chr7:149152571-149152846(-)$1	275	139	163	20.0096
gggggguuuuuuuuuuuugggggg	chr2:204305641-204305864(-)$1	223	170	194	23.8734
ccc[ccctttttttttttcccccc	chr19:5231507-5231766(-)$1	259	216	240	23.0408
c[eeeeettttttttttteeeee]	chr16:28847968-28848202(+)$1	234	102	126	22.4301
&&&cccuuuuuuuuuuuuccc888	chr10:103900888-103901297(+)$1	409	353	377	21.0367
FFFcccuuuuuuuuuuuucccbbx	chr2:71159703-71160015(+)$1	312	12	36	22.1686
eee[bbuuuuuuuuuuuubb]eee	chr2:171819248-171819542(+)$1	294	180	204	23.0838
$$$cccuuuuuuuuuuuucccfff	chr17:79826308-79826582(-)$1	274	126	150	23.4524
&ddddvvvvvvvvvvvvvdddd88	chr12:7045387-7045634(+)$1	247	154	178	20.9871
c:dddduuuuuuuuuuuudddd:e	chr6:89790626-89790879(+)$1	253	98	122	21.0890
ccc[ccctttttttttttcccccc	chr1:8416093-8416376(-)$1	283	198	222	23.0408
ffffffwwwwwwwwwwwwwwffff	chr12:49445568-49445862(-)$1	294	213	237	21.6360
ggggggwwwwwwwwwwwwwwgggg	chr17:65941633-65941914(+)$1	281	103	127	22.4908
eeeewwwwwwwwwwwwwweeeee]	chrX:21863299-21863594(+)$1	295	217	241	21.5953
))ddddvvvvvvvvvvvvvdddd9	chr4:83763288-83763540(-)$1	252	108	132	21.2493
ggg[bbvvvvvvvvvvvvvbb]gg	chr2:27260384-27260638(+)$1	254	64	88	22.9954
""cccvvvvvvvvvvvvvccc333	chrX:153032197-153032437(+)$1	240	12	36	23.6815

#otherMatches

#Seq PSSM
CACUGCUUUGCAAGCUCCAGCAGU	chr6:110423191-110423458(-)$1	267	225	249	20.7771
CCAUGGCUCUCCCAGUUCCCAUGG	chr17:36891502-36891723(-)$1	221	61	85	23.8734
UGGGCAUCAUACCACAUCAGCUCA	chr7:104753145-104753426(+)$1	281	244	268	22.1584
GUUUUUCUUUUCCUUUUCAGAAGC	chr9:111853238-111853506(-)$1	268	51	75	23.8734
GAUGGCUGCCUCCCCAAAACUUGC	chr7:138968680-138968956(+)$1	276	66	90	20.9003
UAUAGUCCCACAUcacccagcuau	chr17:7416327-7416622(+)$1	295	161	185	23.2891
cuggccccccaucccACACUUGCC	chr22:32232752-32233073(+)$1	321	139	163	20.4779
UUCCUUUUGUGUUUUUCUUUAGGU	chr3:171965230-171965503(+)$1	273	70	94	22.1403
GUGACAACCCCUUCCCCCUGCACU	chr21:46935567-46935846(-)$1	279	116	140	22.3667
AGAAGGAAUAAUGAUAUCACCUUC	chrX:70767602-70767876(+)$1	274	30	54	23.6287
AUCAGAUAUUCUACCCUUCUGAAU	chr1:169509894-169510177(-)$1	283	231	255	21.4236
GAUCUUUUUCUUUCUCCCAAAGAU	chr10:118680885-118681128(-)$1	243	79	103	22.5528
GUAGGUCAUCACCAUGUAGGCGCA	chr19:56813324-56813640(-)$1	316	206	230	22.8416
GCAGGUCCCUCCCUCUCCCCCUGC	chr19:7934896-7935165(-)$1	269	221	245	22.1584
CAUGUCCCUGCCUCCCACCCGACA	chr2:242694658-242694933(+)$1	275	40	64	21.6360
GCUCCCCUUCCACCCCCCGGGGAA	chr16:28847934-28848168(+)$1	234	136	160	22.4301
CUCCUCUGUCCCCUCCACCUGAGG	chr12:49445516-49445768(-)$1	252	119	143	21.6360
ccccuucucucucucucCGAGGGG	chr17:7311438-7311679(+)$1	241	73	97	22.7427
UCACGCCUGUCUCCACCGCCUGAG	chr12:49445298-49445562(-)$1	264	74	98	21.7624
UGAAGCAGAUAGCCAGCCAGUUUC	chr2:204305292-204305543(-)$1	251	215	239	22.7588
cccAGGAUACCCCUUUUUUCCCAG	chr20:2816614-2816870(-)$1	256	90	114	22.0535
UAAUGAUCACGCCAACAUUCAGCA	chr22:42263047-42263288(+)$1	241	147	171	23.9938
CUUUGCCCCCUUCUACUCACUCAA	chr17:37627552-37627865(+)$1	313	280	304	21.0442
GACAGACCCCUUAUCCCUCUGGAC	chr1:21329105-21329402(-)$1	297	96	120	21.7665
CGCAGCACCACCACACCACCCCGC	chr16:30748617-30748883(+)$1	266	4	28	20.8959
UGGUCAGCCAUGUCCAAUGAACCU	chr20:43133349-43133579(-)$1	230	113	137	21.9970
GGGGUGUUUGCAUCUCCUCACCCC	chr5:140953425-140953644(-)$1	219	95	119	23.8734
ACCUGGACUUCUUCAGCCCCAGGC	chr17:73235893-73236180(-)$1	287	4	28	23.7449
CCUGGCCUGCCCCCCAUGAUgccc	chr19:56206586-56206912(+)$1	326	70	94	22.1448
GUGCCCGUCACCUCACCUUGGGCA	chr19:50154033-50154274(+)$1	241	124	148	22.7427
AGACUGAAUCCCUUCUCCCAUCUC	chr17:6917539-6917793(+)$1	254	186	210	23.2051
UGCUGCUCUCGCGAUAUUUGCGCG	chr15:78730526-78730790(+)$1	264	8	32	21.8403
AGUCGGCGCUGCUGGACGGGUGGC	chr10:101379908-101380225(-)$1	317	206	230	23.0911
uccuccuucccccucccucGGAGG	chr1:245133935-245134253(+)$1	318	143	167	23.4529
AGGGAGUCCCUCCCCCUUCUCCUC	chr6:33166999-33167244(-)$1	245	93	117	23.6751
CCUGACCUUUUUCGCCCUGCUCCU	chr16:57713920-57714288(+)$1	368	332	356	22.0072
UGCACCCCCCAACUCCCAUGCCCC	chr19:2248437-2248697(+)$1	260	16	40	22.1582
UAAUGAUCACGCCAACAUUCAGCA	chr22:42263032-42263247(+)$1	215	162	186	23.9938
ACCUGCCCCCACCUCACAGCCAGG	chr12:7045913-7046164(+)$1	251	159	183	24.1582
CUGGGGCUUCUCUCGCACCCCCAG	chr19:40487097-40487370(+)$1	273	148	172	23.8734
CGCUGCUUUCCCCACUCCGCAGUG	chr19:56125150-56125473(+)$1	323	250	274	22.8553
CGUGUUCCUGUGUCCCCUGCAUGU	chr16:29822317-29822568(+)$1	251	80	104	22.9331
UGGCCCAGCCCUUUCCCCGUCGGU	chr5:175957552-175957796(-)$1	244	135	159	22.1582
CCUUGUCCACCCCUCUCCACACCC	chrX:47074215-47074474(+)$1	259	138	162	22.2262
AGAAAGACCCCCUGACCCUUUCCC	chr7:149152571-149152846(-)$1	275	139	163	20.0096
UCAGUGCCCCGCCUCCUCCACUGA	chr2:204305641-204305864(-)$1	223	170	194	23.8734
GCCGCCGGAAACGCACAACGGGGC	chr19:5231507-5231766(-)$1	259	216	240	23.0408
GCUCCCCUUCCACCCCCCGGGGAA	chr16:28847968-28848202(+)$1	234	102	126	22.4301
UUCUGGUCUACUGUUCCCCCACCU	chr10:103900888-103901297(+)$1	409	353	377	21.0367
GGGAGACCUUAACAACAAUCUGCU	chr2:71159703-71160015(+)$1	312	12	36	22.1686
GUUGGCUUACCAGAACUUGUAAAC	chr2:171819248-171819542(+)$1	294	180	204	23.0838
UAUCUCCCCGUCACACCCGAGGCC	chr17:79826308-79826582(-)$1	274	126	150	23.4524
UGAGGUUUCCUUAUUCAUCCUCUA	chr12:7045387-7045634(+)$1	247	154	178	20.9871
GCUCCGCCUCCUUUACCCCGGAUC	chr6:89790626-89790879(+)$1	253	98	122	21.0890
CUUCGCCACCCAGUUUUCGGUAAG	chr1:8416093-8416376(-)$1	283	198	222	23.0408
CUCCUCUGUCCCCUCCACCUGAGG	chr12:49445568-49445862(-)$1	294	213	237	21.6360
GUUUCAUCCCAUGUCCCUUCUGAA	chr17:65941633-65941914(+)$1	281	103	127	22.4908
UUCGCUUUAAAUAACUAUCGAAAU	chrX:21863299-21863594(+)$1	295	217	241	21.5953
CCCUCCUCCCCCUUCCUCUGGAGC	chr4:83763288-83763540(-)$1	252	108	132	21.2493
AGCUCUACCCCCGACUGAAAGUGC	chr2:27260384-27260638(+)$1	254	64	88	22.9954
cugccucccucccucccuggcccu	chrX:153032197-153032437(+)$1	240	12	36	23.6815

#DB
.((((((...........))))))	chr6:110423191-110423458(-)$1	1	225	249	20.7771
((((((............))))))	chr17:36891502-36891723(-)$1	1	61	85	23.8734
(((((..............)))))	chr7:104753145-104753426(+)$1	1	244	268	22.1584
((((((............))))))	chr9:111853238-111853506(-)$1	1	51	75	23.8734
)))(((................))	chr7:138968680-138968956(+)$1	1	66	90	20.9003
)(((((.............)))))	chr17:7416327-7416622(+)$1	1	161	185	23.2891
.((((................)))	chr22:32232752-32233073(+)$1	1	139	163	20.4779
.(((((..............))).	chr3:171965230-171965503(+)$1	1	70	94	22.1403
(((.((............))))))	chr21:46935567-46935846(-)$1	1	116	140	22.3667
((((((.............)))))	chrX:70767602-70767876(+)$1	1	30	54	23.6287
((((((...........)))).))	chr1:169509894-169510177(-)$1	1	231	255	21.4236
(((((((...........))))))	chr10:118680885-118681128(-)$1	1	79	103	22.5528
((..(((...........)))..)	chr19:56813324-56813640(-)$1	1	206	230	22.8416
(((((..............)))))	chr19:7934896-7935165(-)$1	1	221	245	22.1584
((((((..............))))	chr2:242694658-242694933(+)$1	1	40	64	21.6360
(.(((((...........))))).	chr16:28847934-28848168(+)$1	1	136	160	22.4301
((((((..............))))	chr12:49445516-49445768(-)$1	1	119	143	21.6360
(((((((...........))))))	chr17:7311438-7311679(+)$1	1	73	97	22.7427
(((.((...........)).)))(	chr12:49445298-49445562(-)$1	1	74	98	21.7624
((((((.............)))).	chr2:204305292-204305543(-)$1	1	215	239	22.7588
((..(((...........)))..)	chr20:2816614-2816870(-)$1	1	90	114	22.0535
(..(((............)))..)	chr22:42263047-42263288(+)$1	1	147	171	23.9938
(((((................)))	chr17:37627552-37627865(+)$1	1	280	304	21.0442
..((((...........))))...	chr1:21329105-21329402(-)$1	1	96	120	21.7665
.(((((................))	chr16:30748617-30748883(+)$1	1	4	28	20.8959
.(((((...........)).))).	chr20:43133349-43133579(-)$1	1	113	137	21.9970
((((((............))))))	chr5:140953425-140953644(-)$1	1	95	119	23.8734
.(((((............))))).	chr17:73235893-73236180(-)$1	1	4	28	23.7449
((.(((..............))).	chr19:56206586-56206912(+)$1	1	70	94	22.1448
(((((((...........))))))	chr19:50154033-50154274(+)$1	1	124	148	22.7427
(((.((............))))))	chr17:6917539-6917793(+)$1	1	186	210	23.2051
.((.((.............)))))	chr15:78730526-78730790(+)$1	1	8	32	21.8403
(((((.(...........).))))	chr10:101379908-101380225(-)$1	1	206	230	23.0911
.(((((.............)))))	chr1:245133935-245134253(+)$1	1	143	167	23.4529
((((((............)))..)	chr6:33166999-33167244(-)$1	1	93	117	23.6751
...((.(...........).)).)	chr16:57713920-57714288(+)$1	1	332	356	22.0072
.(((..............))))))	chr19:2248437-2248697(+)$1	1	16	40	22.1582
(..(((............)))..)	chr22:42263032-42263247(+)$1	1	162	186	23.9938
((((((............).))))	chr12:7045913-7046164(+)$1	1	159	183	24.1582
((((((............))))))	chr19:40487097-40487370(+)$1	1	148	172	23.8734
((((((............))))))	chr19:56125150-56125473(+)$1	1	250	274	22.8553
(((((.............))))).	chr16:29822317-29822568(+)$1	1	80	104	22.9331
.(((..............))))))	chr5:175957552-175957796(-)$1	1	135	159	22.1582
...(((............)))...	chrX:47074215-47074474(+)$1	1	138	162	22.2262
.(((((...........))))).(	chr7:149152571-149152846(-)$1	1	139	163	20.0096
((((((............))))))	chr2:204305641-204305864(-)$1	1	170	194	23.8734
(((.(((...........))))))	chr19:5231507-5231766(-)$1	1	216	240	23.0408
(.(((((...........))))).	chr16:28847968-28848202(+)$1	1	102	126	22.4301
...(((............)))...	chr10:103900888-103901297(+)$1	1	353	377	21.0367
((((((............)))((.	chr2:71159703-71160015(+)$1	1	12	36	22.1686
(((.((............)).)))	chr2:171819248-171819542(+)$1	1	180	204	23.0838
...(((............))))))	chr17:79826308-79826582(-)$1	1	126	150	23.4524
.((((.............))))..	chr12:7045387-7045634(+)$1	1	154	178	20.9871
).((((............)))).(	chr6:89790626-89790879(+)$1	1	98	122	21.0890
(((.(((...........))))))	chr1:8416093-8416376(-)$1	1	198	222	23.0408
((((((..............))))	chr12:49445568-49445862(-)$1	1	213	237	21.6360
((((((..............))))	chr17:65941633-65941914(+)$1	1	103	127	22.4908
((((..............))))).	chrX:21863299-21863594(+)$1	1	217	241	21.5953
..((((.............)))).	chr4:83763288-83763540(-)$1	1	108	132	21.2493
(((.((.............)).))	chr2:27260384-27260638(+)$1	1	64	88	22.9954
..(((.............)))...	chrX:153032197-153032437(+)$1	1	12	36	23.6815

#PSSM
c : 0.19	g : 0.16	e : 0.14	[ : 0.13	f : 0.08	: : 0.03	= : 0.03	" : 0.03	$ : 0.03	& : 0.03	! : 0.01	d : 0.01	b : 0.01	# : 0.01	h : 0.01	F : 0.01	) : 0.01	
e : 0.22	g : 0.16	c : 0.14	f : 0.09	d : 0.04	b : 0.04	[ : 0.03	= : 0.03	! : 0.03	" : 0.03	$ : 0.03	# : 0.01	h : 0.01	& : 0.01	F : 0.01	: : 0.01	) : 0.01	
e : 0.24	g : 0.16	c : 0.13	d : 0.13	f : 0.09	! : 0.06	b : 0.03	= : 0.03	$ : 0.03	[ : 0.01	" : 0.01	& : 0.01	F : 0.01	
c : 0.22	e : 0.21	g : 0.14	[ : 0.13	d : 0.11	f : 0.08	! : 0.03	= : 0.03	b : 0.01	
c : 0.24	e : 0.19	g : 0.14	b : 0.13	d : 0.11	f : 0.08	w : 0.04	= : 0.03	
c : 0.22	g : 0.13	e : 0.11	b : 0.11	f : 0.08	w : 0.08	d : 0.08	v : 0.04	y : 0.03	= : 0.03	[ : 0.03	a : 0.01	
u : 0.31	w : 0.18	v : 0.16	t : 0.08	y : 0.06	c : 0.06	e : 0.03	= : 0.03	a : 0.03	f : 0.01	g : 0.01	
u : 0.31	t : 0.27	w : 0.18	v : 0.16	y : 0.06	
u : 0.31	t : 0.27	w : 0.18	v : 0.16	y : 0.06	
u : 0.31	t : 0.27	w : 0.18	v : 0.16	y : 0.06	
u : 0.31	t : 0.27	w : 0.18	v : 0.16	y : 0.06	
u : 0.31	t : 0.27	w : 0.18	v : 0.16	y : 0.06	
u : 0.31	t : 0.27	w : 0.18	v : 0.16	y : 0.06	
u : 0.31	t : 0.27	w : 0.18	v : 0.16	y : 0.06	
u : 0.31	t : 0.27	w : 0.18	v : 0.16	y : 0.06	
u : 0.31	t : 0.27	w : 0.18	v : 0.16	y : 0.06	
u : 0.31	t : 0.27	w : 0.18	v : 0.16	y : 0.06	
u : 0.31	t : 0.19	w : 0.18	v : 0.16	y : 0.06	d : 0.03	b : 0.03	e : 0.01	
c : 0.22	w : 0.13	v : 0.11	g : 0.09	e : 0.09	b : 0.08	y : 0.06	d : 0.06	a : 0.04	f : 0.03	= : 0.03	
c : 0.22	e : 0.16	g : 0.11	w : 0.09	d : 0.09	b : 0.08	] : 0.08	y : 0.06	f : 0.03	= : 0.03	
c : 0.29	e : 0.19	g : 0.14	d : 0.11	f : 0.08	y : 0.06	b : 0.04	= : 0.03	] : 0.01	
e : 0.26	g : 0.14	f : 0.09	d : 0.09	c : 0.09	2 : 0.08	b : 0.04	y : 0.03	] : 0.03	= : 0.03	3 : 0.03	6 : 0.01	8 : 0.01	
e : 0.26	g : 0.16	c : 0.13	f : 0.09	2 : 0.08	d : 0.06	= : 0.03	3 : 0.03	b : 0.03	: : 0.03	8 : 0.03	] : 0.01	6 : 0.01	
e : 0.22	g : 0.16	c : 0.13	] : 0.13	f : 0.11	d : 0.04	3 : 0.04	= : 0.03	8 : 0.03	b : 0.01	6 : 0.01	x : 0.01	9 : 0.01	

#score	1369.1758484951722
#seq	61
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_CDS_m2_run1.txt

#BEAR
na]hhhhhhhhcccmmmmccciiiiiiiiie	chr15:91537538-91537840(-)$1	302	77	108	10.9520
""bb!!dddd[cccmmmmccc]dddd]bb]f	chr16:15068820-15069163(+)$1	343	7	38	11.7837
=:ccc!!a[a!!ccclllccc22aa22ccc:	chrX:16737668-16737956(+)$1	288	100	131	10.5954
dd!!dddd####bbmmmmbb22dddd]dddd	chr5:140018940-140019325(+)$1	385	331	362	11.8129
!hhhhhhhh!!ccclllccc333hhhhhhhh	chr15:89010359-89010721(-)$1	362	61	92	10.8083
ccc[ffffff[cccmmmmccc]ffffff]cc	chr17:76778176-76778471(-)$1	295	55	86	12.4144
eeecccccc[bbccclllccc]bb]ccc]cc	chr9:133569067-133569333(+)$1	266	189	220	11.1855
iiii"""ccc[cccmmmmccc]ccc333iii	chr7:65446980-65447228(-)$1	248	166	197	14.4123
ee!!ggggggg[bbmmmmbbggggggg333e	chr2:99797277-99797593(-)$1	316	178	209	12.5402
ffffff[gggggggmmmmggggggg]fffff	chr1:24306631-24306946(-)$1	315	124	155	10.4902
ffffaeeeee[cccmmmmccc]eeeee333a	chr4:18023165-18023483(-)$1	318	65	96	12.1365
eee[a!!ccc"""ammmma333ccc22a]ee	chr20:49574882-49575167(-)$1	285	111	142	13.5707
eee[dddd[a!!ccclllccc22a]dddd]e	chr9:114937314-114937591(-)$1	277	11	42	11.7192
b[ccc[a####cccmmmmccc4444accc]b	chr20:42086546-42086801(+)$1	255	26	57	13.9626
ee!!eeeeecccooooooccc]eeeeeeeee	chr21:44313307-44313600(+)$1	293	260	291	9.7045
eeee[ggggggg[bblllbb333ggggggg]	chr2:11606017-11606373(-)$1	356	255	286	11.3810
ggggggg[a!!cccmmmmccca]gggggggE	chr19:19144143-19144433(-)$1	290	225	256	13.2872
%ggggggg####bbmmmmbb333gggggggg	chr20:5930897-5931258(-)$1	361	86	117	13.6605
ee!!dddd"""ccclllccc333dddd]eee	chr5:612368-612658(+)$1	290	150	181	12.5324
cc[bb[a[ccc[bbmmmmbb]ccc]a]bb]c	chr1:150848907-150849199(-)$1	292	132	163	11.3486
ccddddccc[ddddmmmmdddd333ccc]dd	chr2:234762964-234763274(-)$1	310	247	278	10.5473
ee[bb!!bb!!cccmmmmcccbb]bbeeeee	chr16:4664676-4664984(-)$1	308	260	291	11.5782
cc[dddd"""cccnnnnnccc]dddd]ccc]	chr12:120884173-120884470(+)$1	297	167	198	10.5814
dddd[ccc[a[cccmmmmccc]a]ccc22dd	chr16:2273547-2273900(+)$1	353	154	185	13.2377
dd"""ccc####bbmmmmbb4444ccc]ddd	chr16:66785286-66785608(-)$1	322	191	222	13.2365
eeeccc!!ccc!!aooooooa22ccc22ccc	chr20:3869990-3870264(+)$1	274	57	88	10.6037
ee!!gggggggcccmmmmccc22ggggggg]	chr12:105501414-105501708(+)$1	294	170	201	14.0660
gccc[ccc[cccccclllccc22ccc]cccc	chr2:54197699-54198040(-)$1	341	155	186	12.6004
=======gggggggmmmmggggggg22====	chr14:59950880-59951207(-)$1	327	281	312	11.7707
====="""a[ddddllldddd]a]=======	chr16:89894836-89895181(+)$1	345	8	39	10.3720
eeee[dddd[a[bbmmmmbb]adddd]eeee	chr3:88108336-88108617(+)$1	281	227	258	11.2198
:bb!!ccc"""cccmmmmccc22ccc]bb:e	chr1:28879502-28879771(+)$1	269	159	190	11.9174
ddd[bb[ccc[cccmmmmccc]ccc]bb]dd	chr3:169899375-169899625(-)$1	250	132	163	12.4989
!!bbcccccc[cccnnnnnccc]ccc]ccc]	chr18:77794358-77794682(+)$1	324	8	39	10.4595
ff[ffffff[acccmmmmccc]a]fffffff	chr19:45873614-45873904(-)$1	290	42	73	12.2509
eeeee[ccc"""bbmmmmbb333ccceeeee	chr16:89882878-89883153(-)$1	275	165	196	13.8785
a[ggggggg"""ccclllcccggggggg]ac	chr20:62369450-62369726(+)$1	276	185	216	12.5635
========="""bbmmmmbb]==========	chr17:47785110-47785385(-)$1	275	37	68	13.8138
fffff[ccc[ddddmmmmdddd]cccfffff	chr9:134406398-134406709(-)$1	311	72	103	10.3592
fffff[a####cccmmmmcccaffffff]dd	chr19:19302771-19303047(-)$1	276	13	44	12.8381
ffffffdddd[a[ammmma]a]dddd333ff	chr18:21017713-21018024(-)$1	311	200	231	11.0396
c"""ccc[ccccccmmmmccc]ccccccccc	chr5:145214688-145215011(-)$1	323	144	175	13.6036
ccc[cccgggggggmmmmggggggg]ccc]c	chr3:38388187-38388524(+)$1	337	258	289	11.6783
ggggggg$$$$$bbmmmmbb4444ggggggg	chr12:7261611-7261916(-)$1	305	157	188	12.9802
d!!dddd[ccc[ccclllccccccdddd444	chr17:40273216-40273479(-)$1	263	150	181	10.1857
ggggg[ccc[cccnnnnnccccccggggggg	chr20:25604453-25604743(-)$1	290	102	133	11.1041
ee[bb[dddd[cccmmmmcccdddd]bbeee	chr15:76196158-76196481(+)$1	323	226	257	11.3350
eeee!!a"""cccnnnnnccc333a22eeee	chr16:74999614-74999820(-)$1	206	42	73	11.6457
eee"""bb####bbmmmmbb4444bb333ee	chr8:144922851-144923233(-)$1	382	280	311	13.0968
eeeee[bb"""cccmmmmccc333bb]eeee	chr5:95297256-95297530(-)$1	274	47	78	13.9349
aggggggg####bbmmmmbb4444ggggggg	chr17:75277480-75277738(+)$1	258	167	198	13.9740
ffccceeeee[cccmmmmccc]eeeee22cc	chr17:42148183-42148474(+)$1	291	227	258	11.9995
c[ccc[bb"""cccmmmmccc22bb]ccccc	chr3:45730808-45731097(+)$1	289	72	103	13.7857
mddddeeeee[cccmmmmccc]eeeeeaggg	chr5:149737166-149737510(+)$1	344	151	182	11.2508
ccc[ccc[bb[a[ammmma]a]bb]cccccc	chr16:1728199-1728461(+)$1	262	80	111	11.6806
gggiiiiiiiiibbmmmmbb]iiiiiiiii3	chr11:68816303-68816587(+)$1	284	108	139	12.3990
hhhhhh[ccccccnnnnnccc333ccchhhh	chr11:47788693-47788983(-)$1	290	202	233	10.0636

#otherMatches

#Seq PSSM
CGGCUCGCGGAGCGGCUACGCGGAGUGACAU	chr15:91537538-91537840(-)$1	302	77	108	10.9520
CAGGUACGGAAUCCCAGAGGGCUCCGCCCAG	chr16:15068820-15069163(+)$1	343	7	38	11.7837
GCGCAGAGUGGAGUCAAAGGCAACCAGUGCU	chrX:16737668-16737956(+)$1	288	100	131	10.5954
GUUCUGGGUUGUGGUCGUCCUUCCCACGCUC	chr5:140018940-140019325(+)$1	385	331	362	11.8129
CCCGCGGCUGAGGGAUCCCUGGGAGCCGCGG	chr15:89010359-89010721(-)$1	362	61	92	10.8083
ggcgcggggcgccgggggcggggcUCCGAGC	chr17:76778176-76778471(-)$1	295	55	86	12.4144
GUGGUGCCGGGGGAUACAAUCACUACGGACA	chr9:133569067-133569333(+)$1	266	189	220	11.1855
GAGUGCAAGGAGCUGGACGGCCUCUGGAGCU	chr7:65446980-65447228(-)$1	248	166	197	14.4123
GCAGAGCACAGCUGCAGCCACUGUGCUAAAG	chr2:99797277-99797593(-)$1	316	178	209	12.5402
UGUCUGAGGCUCGGCCGCCUGAGCCGCGGAC	chr1:24306631-24306946(-)$1	315	124	155	10.4902
UGCGCUGCUCGUAUGUAAAUGAGGGCGCGUG	chr4:18023165-18023483(-)$1	318	65	96	12.1365
CCUCCUUGGAAGUCAGUCGUAGUCCUCGCAG	chr20:49574882-49575167(-)$1	285	111	142	13.5707
CUUAUCUCUGCACCCUGAGGGCCCCGGGAGG	chr9:114937314-114937591(-)$1	277	11	42	11.7192
GCGCGUGUUCGGGCUCUUGCCGUCCCCGCAC	chr20:42086546-42086801(+)$1	255	26	57	13.9626
GGUCAGGUCCGGGCCUGUCCGCGACCUCUAG	chr21:44313307-44313600(+)$1	293	260	291	9.7045
CUUAGGUGCUGGGCCCUUGGAAAUCGGCGCG	chr2:11606017-11606373(-)$1	356	255	286	11.3810
CCGGGGUGGGAAGCUCGGGCUCGGCCUUGGG	chr19:19144143-19144433(-)$1	290	225	256	13.2872
GUGGGGGCGGUGCCGGUCGGAGGGCUCCUAG	chr20:5930897-5931258(-)$1	361	86	117	13.6605
GUUCGGGCGAAGAGCGGCUUAGGGCCUCACC	chr5:612368-612658(+)$1	290	150	181	12.5324
GCGGCGGCGGUGGCAUCUGCGGCCAUGGCGG	chr1:150848907-150849199(-)$1	292	132	163	11.3486
GCGGCCCCCGCCGGUCCGCCGGGAGGGGAGG	chr2:234762964-234763274(-)$1	310	247	278	10.5473
CGACCAGGCGAAGCAACUGCUGCAGGCGGCC	chr16:4664676-4664984(-)$1	308	260	291	11.5782
UUCACCUCCAAGGCGGAUCCUCAGGUAAAGG	chr12:120884173-120884470(+)$1	297	167	198	10.5814
GUUGCGGCGGUGGCGGCGGCCUUGGCCCCCA	chr16:2273547-2273900(+)$1	353	154	185	13.2377
CAGUGAGGAGGAGGAAGGCCAGAGCCUAUGG	chr16:66785286-66785608(-)$1	322	191	222	13.2365
GCCGCGGAGGAGGCGAGAAGGAAUCCGACGC	chr20:3869990-3870264(+)$1	274	57	88	10.6037
GUGGAGACUCUGUCCCCGGACUGGGAGUUUG	chr12:105501414-105501708(+)$1	294	170	201	14.0660
ccggagccgggcgggcgucccgagccgggcc	chr2:54197699-54198040(-)$1	341	155	186	12.6004
GCGGGGUGUCCGGAGGUGUCUGGGCCCACCC	chr14:59950880-59951207(-)$1	327	281	312	11.7707
gccccCAACCUGAGGCGCUCGCGCGGGGCGG	chr16:89894836-89895181(+)$1	345	8	39	10.3720
CUGCGggcgacggcagaggcggcgcuggcag	chr3:88108336-88108617(+)$1	281	227	258	11.2198
AGCCGUCCGGGGUCUGAAGACAAGGAAGCAU	chr1:28879502-28879771(+)$1	269	159	190	11.9174
CGGAGUGAGUGACUAGAUGGUGACUGAUGUC	chr3:169899375-169899625(-)$1	250	132	163	12.4989
CUGCCAGGCGUGAGUCUUCCUCCCGCUCUGC	chr18:77794358-77794682(+)$1	324	8	39	10.4595
CGGCCUCUCGCUGAAUAUUCAUGAGGGAGGC	chr19:45873614-45873904(-)$1	290	42	73	12.2509
CCAGGACCCAGGGGGCCGCCGGAGGGCCUGG	chr16:89882878-89883153(-)$1	275	165	196	13.8785
GGAGCUGCCCCGGGCUCUGCCGGCAGCUGCA	chr20:62369450-62369726(+)$1	276	185	216	12.5635
UGACUGCUGGGCCCUGCUGGACAGCGGUCGC	chr17:47785110-47785385(-)$1	275	37	68	13.8138
CUCGGCGCUGGGCGGGCGCGCCGGGCCUGGG	chr9:134406398-134406709(-)$1	311	72	103	10.3592
CCGGAACAGGAGCCGUGCGGCGUCCGGUUUC	chr19:19302771-19303047(-)$1	276	13	44	12.8381
GUUGACAGAUGUGCGUGAGGAGGUCUCUGGU	chr18:21017713-21018024(-)$1	311	200	231	11.0396
AGCUCUGAGCUCGCGGAGGCGUGGCCGGUgc	chr5:145214688-145215011(-)$1	323	144	175	13.6036
GCCGCCUCCUCCGCUUCGGUGGGGGUAGGGG	chr3:38388187-38388524(+)$1	337	258	289	11.6783
GUGGGGGAAAUAUCUCUGGAGAAGCCCUCAC	chr12:7261611-7261916(-)$1	305	157	188	12.9802
GGAGGCCAUGGCGGAACCUUCCCAGgccccg	chr17:40273216-40273479(-)$1	263	150	181	10.1857
CUUGCGCAUGCGCAGGCGGCGGUGGCAAGGC	chr20:25604453-25604743(-)$1	290	102	133	11.1041
GGAGGUGGUGGAGCGUGUGCUCACCUUCCUG	chr15:76196158-76196481(+)$1	323	226	257	11.3350
UGCCUUCUAUCCCCGGCUGGGUUUGCUGGCA	chr16:74999614-74999820(-)$1	206	42	73	11.6457
ggaggacgagagcgaggacgagagcgaCAUC	chr8:144922851-144923233(-)$1	382	280	311	13.0968
gccgcaguggaggcuagagccggagcggcgg	chr5:95297256-95297530(-)$1	274	47	78	13.9349
GCCCGGGGUGGGGAGGGGUCGGUGUCCCGGG	chr17:75277480-75277738(+)$1	258	167	198	13.9740
GCUCUGGAUCACCUUUCUGGGCGAUCCCAAG	chr17:42148183-42148474(+)$1	291	227	258	11.9995
GACCGGUAGAGUUGUAGCCGAGGUggcggcg	chr3:45730808-45731097(+)$1	289	72	103	13.7857
GGCCAGGAAGCGGCGGGAGCUACUUCCCCUG	chr5:149737166-149737510(+)$1	344	151	182	11.2508
GGCGCGCGGCGAGCUGAGGGUGGCGGCGGUC	chr16:1728199-1728461(+)$1	262	80	111	11.6806
GGCGCCUUCGGGGCUUGAGCUUCUGAGGGUC	chr11:68816303-68816587(+)$1	284	108	139	12.3990
GGGUCCUCGGGGCAGCACGCCGGGCCGGGAC	chr11:47788693-47788983(-)$1	290	202	233	10.0636

#DB
.).))))))))(((....)))((((((((((	chr15:91537538-91537840(-)$1	1	77	108	10.9520
..((..((((.(((....))).)))).)).)	chr16:15068820-15069163(+)$1	1	7	38	11.7837
).(((..(.(..(((...)))..))..))).	chrX:16737668-16737956(+)$1	1	100	131	10.5954
((..((((....((....))..)))).))))	chr5:140018940-140019325(+)$1	1	331	362	11.8129
.((((((((..(((...)))...))))))))	chr15:89010359-89010721(-)$1	1	61	92	10.8083
(((.((((((.(((....))).)))))).))	chr17:76778176-76778471(-)$1	1	55	86	12.4144
)))((((((.(((((...))).)).))).))	chr9:133569067-133569333(+)$1	1	189	220	11.1855
((((...(((.(((....))).)))...)))	chr7:65446980-65447228(-)$1	1	166	197	14.4123
((..(((((((.((....)))))))))...)	chr2:99797277-99797593(-)$1	1	178	209	12.5402
((((((.(((((((....))))))).)))))	chr1:24306631-24306946(-)$1	1	124	155	10.4902
((((((((((.(((....))).)))))...)	chr4:18023165-18023483(-)$1	1	65	96	12.1365
(((.(..(((...(....)...)))..).))	chr20:49574882-49575167(-)$1	1	111	142	13.5707
(((.((((.(..(((...)))..).)))).)	chr9:114937314-114937591(-)$1	1	11	42	11.7192
(.(((.(....(((....)))....)))).)	chr20:42086546-42086801(+)$1	1	26	57	13.9626
((..((((((((......))).)))))))))	chr21:44313307-44313600(+)$1	1	260	291	9.7045
((((.(((((((.((...))...))))))).	chr2:11606017-11606373(-)$1	1	255	286	11.3810
(((((((.(..(((....)))).))))))))	chr19:19144143-19144433(-)$1	1	225	256	13.2872
.(((((((....((....))...))))))))	chr20:5930897-5931258(-)$1	1	86	117	13.6605
((..((((...(((...)))...)))).)))	chr5:612368-612658(+)$1	1	150	181	12.5324
((.((.(.(((.((....)).))).).)).)	chr1:150848907-150849199(-)$1	1	132	163	11.3486
))(((((((.((((....))))...))).))	chr2:234762964-234763274(-)$1	1	247	278	10.5473
((.((..((..(((....))))).)))))))	chr16:4664676-4664984(-)$1	1	260	291	11.5782
((.((((...(((.....))).)))).))).	chr12:120884173-120884470(+)$1	1	167	198	10.5814
((((.(((.(.(((....))).).)))..))	chr16:2273547-2273900(+)$1	1	154	185	13.2377
((...(((....((....))....))).)))	chr16:66785286-66785608(-)$1	1	191	222	13.2365
)))(((..(((..(......)..)))..)))	chr20:3869990-3870264(+)$1	1	57	88	10.6037
((..((((((((((....)))..))))))).	chr12:105501414-105501708(+)$1	1	170	201	14.0660
((((.(((.((((((...)))..))).))))	chr2:54197699-54198040(-)$1	1	155	186	12.6004
((((((((((((((....)))))))..))))	chr14:59950880-59951207(-)$1	1	281	312	11.7707
(((((...(.((((...)))).).)))))))	chr16:89894836-89895181(+)$1	1	8	39	10.3720
((((.((((.(.((....)).))))).))))	chr3:88108336-88108617(+)$1	1	227	258	11.2198
.((..(((...(((....)))..))).)).(	chr1:28879502-28879771(+)$1	1	159	190	11.9174
(((.((.(((.(((....))).))).)).))	chr3:169899375-169899625(-)$1	1	132	163	12.4989
..((((((((.(((.....))).))).))).	chr18:77794358-77794682(+)$1	1	8	39	10.4595
((.((((((.((((....))).).)))))))	chr19:45873614-45873904(-)$1	1	42	73	12.2509
(((((.(((...((....))...))))))))	chr16:89882878-89883153(-)$1	1	165	196	13.8785
(.(((((((...(((...)))))))))).)(	chr20:62369450-62369726(+)$1	1	185	216	12.5635
(((((((((...((....)).))))))))))	chr17:47785110-47785385(-)$1	1	37	68	13.8138
(((((.(((.((((....)))).))))))))	chr9:134406398-134406709(-)$1	1	72	103	10.3592
(((((.(....(((....)))))))))).))	chr19:19302771-19303047(-)$1	1	13	44	12.8381
((((((((((.(.(....).).))))...))	chr18:21017713-21018024(-)$1	1	200	231	11.0396
(...(((.((((((....))).)))))))))	chr5:145214688-145215011(-)$1	1	144	175	13.6036
(((.((((((((((....))))))).))).)	chr3:38388187-38388524(+)$1	1	258	289	11.6783
(((((((.....((....))....)))))))	chr12:7261611-7261916(-)$1	1	157	188	12.9802
(..((((.(((.(((...))))))))))...	chr17:40273216-40273479(-)$1	1	150	181	10.1857
(((((.(((.(((.....)))))))))))))	chr20:25604453-25604743(-)$1	1	102	133	11.1041
((.((.((((.(((....))))))).)))))	chr15:76196158-76196481(+)$1	1	226	257	11.3350
((((..(...(((.....)))...)..))))	chr16:74999614-74999820(-)$1	1	42	73	11.6457
(((...((....((....))....))...))	chr8:144922851-144923233(-)$1	1	280	311	13.0968
(((((.((...(((....)))...)).))))	chr5:95297256-95297530(-)$1	1	47	78	13.9349
((((((((....((....))....)))))))	chr17:75277480-75277738(+)$1	1	167	198	13.9740
))((((((((.(((....))).)))))..))	chr17:42148183-42148474(+)$1	1	227	258	11.9995
(.(((.((...(((....)))..)).)))))	chr3:45730808-45731097(+)$1	1	72	103	13.7857
.))))(((((.(((....))).)))))((((	chr5:149737166-149737510(+)$1	1	151	182	11.2508
(((.(((.((.(.(....).).)).))))))	chr16:1728199-1728461(+)$1	1	80	111	11.6806
((((((((((((((....)).))))))))).	chr11:68816303-68816587(+)$1	1	108	139	12.3990
((((((.((((((.....)))...)))))))	chr11:47788693-47788983(-)$1	1	202	233	10.0636

#PSSM
e : 0.28	c : 0.14	f : 0.12	d : 0.08	g : 0.08	= : 0.07	! : 0.03	a : 0.03	n : 0.01	" : 0.01	i : 0.01	b : 0.01	% : 0.01	: : 0.01	m : 0.01	h : 0.01	
e : 0.28	c : 0.12	f : 0.12	g : 0.10	d : 0.08	[ : 0.05	= : 0.05	" : 0.03	h : 0.03	! : 0.03	a : 0.01	: : 0.01	i : 0.01	b : 0.01	
e : 0.17	c : 0.14	g : 0.12	! : 0.10	f : 0.08	[ : 0.08	d : 0.07	b : 0.05	= : 0.05	h : 0.03	" : 0.03	] : 0.01	i : 0.01	
c : 0.12	! : 0.10	[ : 0.10	f : 0.10	g : 0.10	b : 0.08	e : 0.08	d : 0.08	h : 0.05	" : 0.05	= : 0.05	i : 0.03	
c : 0.17	g : 0.14	d : 0.12	f : 0.10	[ : 0.07	b : 0.07	h : 0.05	! : 0.05	" : 0.05	e : 0.05	= : 0.05	a : 0.03	i : 0.01	
c : 0.17	[ : 0.15	g : 0.14	d : 0.12	! : 0.08	f : 0.07	e : 0.07	h : 0.05	" : 0.05	= : 0.03	b : 0.01	i : 0.01	
c : 0.22	d : 0.15	g : 0.14	! : 0.07	e : 0.07	a : 0.07	[ : 0.05	b : 0.05	h : 0.03	f : 0.03	" : 0.03	= : 0.03	i : 0.01	
c : 0.24	g : 0.15	d : 0.12	[ : 0.08	e : 0.07	b : 0.07	" : 0.05	h : 0.03	f : 0.03	# : 0.03	a : 0.01	! : 0.01	= : 0.01	$ : 0.01	i : 0.01	
c : 0.24	# : 0.12	g : 0.12	" : 0.10	d : 0.07	[ : 0.07	e : 0.07	h : 0.03	f : 0.03	a : 0.03	b : 0.03	= : 0.01	$ : 0.01	i : 0.01	
c : 0.19	" : 0.15	# : 0.12	[ : 0.12	g : 0.10	d : 0.05	a : 0.05	! : 0.05	e : 0.05	h : 0.01	f : 0.01	$ : 0.01	b : 0.01	i : 0.01	
[ : 0.21	c : 0.17	" : 0.14	# : 0.12	g : 0.10	! : 0.08	d : 0.05	a : 0.03	h : 0.01	b : 0.01	$ : 0.01	i : 0.01	
c : 0.50	# : 0.08	[ : 0.07	g : 0.07	" : 0.07	! : 0.05	d : 0.05	a : 0.03	b : 0.01	$ : 0.01	i : 0.01	
c : 0.57	b : 0.21	g : 0.05	[ : 0.05	d : 0.05	" : 0.01	o : 0.01	! : 0.01	
c : 0.50	b : 0.22	a : 0.07	n : 0.07	g : 0.05	d : 0.05	o : 0.01	
m : 0.70	c : 0.10	n : 0.08	l : 0.05	o : 0.03	b : 0.01	
m : 0.70	l : 0.17	n : 0.08	o : 0.03	
m : 0.70	l : 0.17	n : 0.08	o : 0.03	
m : 0.70	l : 0.12	n : 0.08	c : 0.03	o : 0.03	d : 0.01	
c : 0.57	b : 0.22	g : 0.05	a : 0.05	d : 0.05	o : 0.01	n : 0.01	
c : 0.59	b : 0.22	g : 0.05	d : 0.05	] : 0.03	3 : 0.01	o : 0.01	
c : 0.56	3 : 0.10	g : 0.07	] : 0.07	4 : 0.07	d : 0.05	a : 0.05	2 : 0.01	
] : 0.28	3 : 0.15	2 : 0.14	g : 0.08	4 : 0.08	c : 0.07	a : 0.05	d : 0.05	i : 0.03	b : 0.01	= : 0.01	
3 : 0.15	2 : 0.12	c : 0.12	d : 0.10	g : 0.08	4 : 0.08	e : 0.07	b : 0.05	] : 0.05	a : 0.05	i : 0.03	f : 0.03	= : 0.01	
c : 0.22	g : 0.15	d : 0.12	4 : 0.08	e : 0.07	3 : 0.07	] : 0.07	b : 0.05	i : 0.03	a : 0.03	f : 0.03	h : 0.01	= : 0.01	
c : 0.22	g : 0.21	d : 0.14	] : 0.07	e : 0.07	b : 0.07	f : 0.05	i : 0.03	a : 0.03	= : 0.03	h : 0.01	4 : 0.01	3 : 0.01	
c : 0.22	g : 0.15	d : 0.14	] : 0.08	2 : 0.07	e : 0.07	f : 0.05	b : 0.05	i : 0.03	a : 0.03	= : 0.03	h : 0.01	3 : 0.01	
c : 0.17	] : 0.15	g : 0.15	e : 0.10	2 : 0.08	f : 0.08	3 : 0.05	d : 0.05	i : 0.03	= : 0.03	b : 0.03	h : 0.01	
c : 0.19	g : 0.14	e : 0.10	b : 0.08	f : 0.08	3 : 0.08	d : 0.05	2 : 0.05	= : 0.05	i : 0.03	h : 0.03	a : 0.03	] : 0.03	
c : 0.17	e : 0.14	g : 0.14	] : 0.12	3 : 0.07	i : 0.05	b : 0.05	d : 0.05	f : 0.05	= : 0.05	h : 0.03	2 : 0.03	4 : 0.01	
c : 0.19	e : 0.17	g : 0.14	d : 0.10	] : 0.08	f : 0.07	i : 0.05	= : 0.05	h : 0.03	3 : 0.03	: : 0.01	a : 0.01	4 : 0.01	
e : 0.24	c : 0.19	d : 0.10	f : 0.08	g : 0.08	] : 0.07	= : 0.05	h : 0.03	: : 0.01	i : 0.01	a : 0.01	b : 0.01	E : 0.01	4 : 0.01	3 : 0.01	

#score	686.4516846276243
#seq	57
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_transcript_m2_run2.txt

#BEAR
ee!!cccqqqqqqqqccceeee	chr10:103553336-103553597(-)$1	261	205	227	15.7799
gggggggqqqqqqqqggggggg	chr9:140484394-140484698(-)$1	304	230	252	14.9296
!bb[cccqqqqqqqqcccbb33	chr19:10406372-10406641(+)$1	269	163	185	14.7639
gggggggqqqqqqqqggggggg	chr8:128749856-128750111(+)$1	255	50	72	14.9296
b"""cccqqqqqqqqccc]bb2	chr1:109236041-109236290(+)$1	249	11	33	14.8846
bb!!cccqqqqqqqqccc]bb]	chr1:26496910-26497204(+)$1	294	160	182	14.9632
eee[a[aqqqqqqqqaa]eeee	chr15:91416616-91416878(+)$1	262	172	194	15.0450
eeeecccqqqqqqqqccc]eee	chr3:50139949-50140235(+)$1	286	200	222	15.5118
iiiiiiiqqqqqqqqiiiiiii	chr12:31477256-31477500(-)$1	244	153	175	14.7400
gggggggqqqqqqqqggggggg	chr1:54840468-54840740(-)$1	272	205	227	14.9296
bb[ddddqqqqqqqqddddbbe	chr6:111804051-111804309(-)$1	258	231	253	13.8307
cc[ddddqqqqqqqqdddd]cc	chr16:1413573-1413869(-)$1	296	191	213	14.6562
f[ccc[aqqqqqqqqa]ccc]f	chr17:74083311-74083599(-)$1	288	225	247	14.8552
ddeeeeeqqqqqqqqeeeee]d	chr19:1271406-1271667(+)$1	261	177	199	14.9104
ee!!cccqqqqqqqqccceeee	chr21:35446336-35446628(+)$1	292	79	101	15.7799
gggggggqqqqqqqqggggggg	chr2:3623204-3623493(+)$1	289	39	61	14.9296
eee[cccrrrrrrrrrccc22e	chr21:45740096-45740344(+)$1	248	163	185	8.9097
"""ddddqqqqqqqqdddd333	chr16:84733717-84734003(+)$1	286	100	122	15.2061
""eeeeeqqqqqqqqeeeeedd	chr11:67008061-67008279(+)$1	218	161	183	14.9963
h"""cccqqqqqqqqccc22hh	chr14:60716520-60716789(+)$1	269	44	66	15.0489
Adddd[aqqqqqqqqa]dddd:	chr15:89877733-89878054(-)$1	321	108	130	12.8008
ccc"""aqqqqqqqqa333ccc	chr2:114353326-114353670(+)$1	344	140	162	14.5735
a[eeeeeqqqqqqqqeeeee]a	chr20:48552992-48553387(+)$1	395	46	68	15.2369
gggggggqqqqqqqqggggggg	chr22:49925215-49925496(-)$1	281	33	55	14.9296
eee[cccqqqqqqqqccc22ee	chr15:64125786-64126067(-)$1	281	9	31	15.5196
g[eeeeeqqqqqqqqeeeee]g	chr2:113403625-113403946(+)$1	321	228	250	15.2782
[ffffffqqqqqqqqffffff]	chr19:2270402-2270678(+)$1	276	241	263	13.7697
[ddddbbqqqqqqqqbb]dddd	chr12:132402728-132402988(+)$1	260	179	201	13.3189
:ffffffqqqqqqqqffffff:	chr6:74230135-74230370(-)$1	235	207	229	11.9396
b!!ddddqqqqqqqqdddd999	chr22:50034635-50034893(-)$1	258	179	201	12.8772
!ffffffqqqqqqqqffffff2	chr14:102515875-102516152(+)$1	277	176	198	13.6742
hhh"""aqqqqqqqqa22hhhh	chr15:29403312-29403592(+)$1	280	14	36	12.9718
#bb[cccqqqqqqqqccc333b	chr1:31970333-31970564(-)$1	231	188	210	15.2859
eeccc[aqqqqqqqqa]cccgg	chr19:3698783-3699036(-)$1	253	175	197	14.8160
ee[ddddqqqqqqqqdddd22e	chr3:169482704-169482922(-)$1	218	120	142	14.6863
[eeeeeaqqqqqqqqa]eeeee	chr4:103748200-103748455(-)$1	255	167	189	15.1150
eee[cccqqqqqqqqccceeee	chr17:72768084-72768404(-)$1	320	282	304	15.7043
bb!!cccqqqqqqqqccc22bb	chr20:60718859-60719138(+)$1	279	70	92	14.8409
!!eeeeeqqqqqqqqeeeee22	chr1:155658345-155658603(-)$1	258	68	90	15.1217
c[eeeeeqqqqqqqqeeeee]c	chr21:46493847-46494141(+)$1	294	232	254	15.2123
b[eeeeeqqqqqqqqeeeee]b	chr10:75758880-75759182(+)$1	302	161	183	14.8637
ddeeeeeqqqqqqqqeeeeeFF	chr5:180670480-180670732(-)$1	252	170	192	13.9721
dd!!cccqqqqqqqqccc22dd	chr10:976897-977191(-)$1	294	120	142	15.4093
ddd[cccqqqqqqqqccc]ddd	chr12:56556303-56556562(-)$1	259	201	223	15.2274
$$$ddddqqqqqqqqdddd===	chr16:89007032-89007284(-)$1	252	39	61	14.2539
!!eeeeeqqqqqqqqeeeee44	chr3:133380508-133380801(-)$1	293	261	283	15.2872
fff[cccqqqqqqqqccc]fff	chr17:80230606-80230864(-)$1	258	116	138	15.1282
ddd[cccqqqqqqqqccc]ddd	chr5:177632137-177632386(+)$1	249	72	94	15.2274
fffddddqqqqqqqqdddd22f	chr12:69004785-69005078(+)$1	293	6	28	14.2022
$$$ddddqqqqqqqqdddd22c	chr7:150645349-150645602(-)$1	253	221	243	14.1759
A:eeeeeqqqqqqqqeeeeeff	chr6:158244567-158244849(+)$1	282	208	230	13.0913
ddd[cccqqqqqqqqcccdddd	chr19:46697289-46697535(-)$1	246	201	223	15.1117
dddd[bbqqqqqqqqbb333dd	chr16:88728798-88729035(-)$1	237	205	227	13.5022

#otherMatches

#Seq PSSM
GCCCGCAAUGCACAAUGCGCGC	chr10:103553336-103553597(-)$1	261	205	227	15.7799
GCACCCCUCGGCUCUGGGGUGC	chr9:140484394-140484698(-)$1	304	230	252	14.9296
AGGACUUUAAAACUUGGGCUGG	chr19:10406372-10406641(+)$1	269	163	185	14.7639
AGUGUUggacgggggcgguacu	chr8:128749856-128750111(+)$1	255	50	72	14.9296
UCAGGAGUAAGAGGUCUCAGCC	chr1:109236041-109236290(+)$1	249	11	33	14.8846
AGCAGCUGAGCGUCGAGCCCUA	chr1:26496910-26497204(+)$1	294	160	182	14.9632
GAGAGAGAUGAGGCCCCGUUCC	chr15:91416616-91416878(+)$1	262	172	194	15.0450
CAGUCUCAGAACUGAGAGAAUU	chr3:50139949-50140235(+)$1	286	200	222	15.5118
CGGCGCUUCAGCCCUGGCGUCG	chr12:31477256-31477500(-)$1	244	153	175	14.7400
UGAAAACUAAAGAAUGUUUUUA	chr1:54840468-54840740(-)$1	272	205	227	14.9296
GGAUAGUGACUGCAGACUACUA	chr6:111804051-111804309(-)$1	258	231	253	13.8307
GUGGCUGAGGCACAGCAGUGGC	chr16:1413573-1413869(-)$1	296	191	213	14.6562
UCAGAGGGUAGCAAGUGUCUCA	chr17:74083311-74083599(-)$1	288	225	247	14.8552
CGAGUCCAGGAGUGGGGGCUAC	chr19:1271406-1271667(+)$1	261	177	199	14.9104
CUCCGGCCCGUCCCCGCCAGUC	chr21:35446336-35446628(+)$1	292	79	101	15.7799
GCCGGACGAGUUCGAGUCCGGC	chr2:3623204-3623493(+)$1	289	39	61	14.9296
GGUGGAUGGAAAUGAAGUCAGG	chr21:45740096-45740344(+)$1	248	163	185	8.9097
GGGAGUGGGGGAGGGCGCUGGG	chr16:84733717-84734003(+)$1	286	100	122	15.2061
CUUUAUAUGGUUUCUUGUAGGG	chr11:67008061-67008279(+)$1	218	161	183	14.9963
GGCGGACGGCGAGGGGUUAACG	chr14:60716520-60716789(+)$1	269	44	66	15.0489
GGGUCGGGGGAGCAGCAGACCG	chr15:89877733-89878054(-)$1	321	108	130	12.8008
ACCCAGGGCAUCAGACACAGGU	chr2:114353326-114353670(+)$1	344	140	162	14.5735
CGUGUGCUUAGAGGUGUACGAG	chr20:48552992-48553387(+)$1	395	46	68	15.2369
AGCUCUGGAAAGAUGUGGGGCU	chr22:49925215-49925496(-)$1	281	33	55	14.9296
AGCCGCGCCCCACCCCGCCAGC	chr15:64125786-64126067(-)$1	281	9	31	15.5196
GCGGGCCUUUUUGGCGGUCCCC	chr2:113403625-113403946(+)$1	321	228	250	15.2782
UCGGUCGAGCUUUCCCGACUGC	chr19:2270402-2270678(+)$1	276	241	263	13.7697
AGCAUUGGGAUAUAACAGGUGU	chr12:132402728-132402988(+)$1	260	179	201	13.3189
UGAGCGGAAAGAUGGCCGCUUC	chr6:74230135-74230370(-)$1	235	207	229	11.9396
CGCCAAUGCCAAUUGAUUGACC	chr22:50034635-50034893(-)$1	258	179	201	12.8772
ACAUCCACGUGUGCCUGGGUGG	chr14:102515875-102516152(+)$1	277	176	198	13.6742
GCAAUACGAAAGAGAGGGUGCC	chr15:29403312-29403592(+)$1	280	14	36	12.9718
aacauaugcaaaucaauaaaag	chr1:31970333-31970564(-)$1	231	188	210	15.2859
CCAGCUGGCCAUAUACUGCUUC	chr19:3698783-3699036(-)$1	253	175	197	14.8160
UAACCCUAACUGAGAAGGGCGU	chr3:169482704-169482922(-)$1	218	120	142	14.6863
GGGUGACACAGAAUAGCUCGCU	chr4:103748200-103748455(-)$1	255	167	189	15.1150
UUCCAGAAACUUCACUUUGAGC	chr17:72768084-72768404(-)$1	320	282	304	15.7043
GCAAACCAUCCAGAAggugggc	chr20:60718859-60719138(+)$1	279	70	92	14.8409
UGGCGGCGGUUGGUGGCCGUGC	chr1:155658345-155658603(-)$1	258	68	90	15.1217
cccagcuaccagggaggcugag	chr21:46493847-46494141(+)$1	294	232	254	15.2123
GCUGGGGCAUCCGCUCCCCAUC	chr10:75758880-75759182(+)$1	302	161	183	14.8637
UGCCCCAUUGUGAAUUGGGGCG	chr5:180670480-180670732(-)$1	252	170	192	13.9721
ccggggcaggggaaggccgggg	chr10:976897-977191(-)$1	294	120	142	15.4093
GUCCCAGCUUCUCCCCUGUGAC	chr12:56556303-56556562(-)$1	259	201	223	15.2274
UGAGCAGAGCCUGACCUGCGGG	chr16:89007032-89007284(-)$1	252	39	61	14.2539
UUCAGGACCCUCUUUUCCUGUC	chr3:133380508-133380801(-)$1	293	261	283	15.2872
uggggccgcgaagcgggCGUCG	chr17:80230606-80230864(-)$1	258	116	138	15.1282
CUCGCGCUGGAGUUUGCGGGAG	chr5:177632137-177632386(+)$1	249	72	94	15.2274
CUGGCUGCAGGGACCCGGUGAC	chr12:69004785-69005078(+)$1	293	6	28	14.2022
gcugcccaucuuucagggcccc	chr7:150645349-150645602(-)$1	253	221	243	14.1759
CGGGCUCGCCGGGAGGGGCCGC	chr6:158244567-158244849(+)$1	282	208	230	13.0913
AUUUGAAUGACAAGUUUCAGUG	chr19:46697289-46697535(-)$1	246	201	223	15.1117
ugaccacucauuucuguaacgu	chr16:88728798-88729035(-)$1	237	205	227	13.5022

#DB
((..(((........)))))))	chr10:103553336-103553597(-)$1	1	205	227	15.7799
(((((((........)))))))	chr9:140484394-140484698(-)$1	1	230	252	14.9296
.((.(((........)))))..	chr19:10406372-10406641(+)$1	1	163	185	14.7639
(((((((........)))))))	chr8:128749856-128750111(+)$1	1	50	72	14.9296
(...(((........))).)).	chr1:109236041-109236290(+)$1	1	11	33	14.8846
((..(((........))).)).	chr1:26496910-26497204(+)$1	1	160	182	14.9632
(((.(.(........)).))))	chr15:91416616-91416878(+)$1	1	172	194	15.0450
(((((((........))).)))	chr3:50139949-50140235(+)$1	1	200	222	15.5118
(((((((........)))))))	chr12:31477256-31477500(-)$1	1	153	175	14.7400
(((((((........)))))))	chr1:54840468-54840740(-)$1	1	205	227	14.9296
((.((((........)))))))	chr6:111804051-111804309(-)$1	1	231	253	13.8307
((.((((........)))).))	chr16:1413573-1413869(-)$1	1	191	213	14.6562
(.(((.(........).))).)	chr17:74083311-74083599(-)$1	1	225	247	14.8552
(((((((........))))).)	chr19:1271406-1271667(+)$1	1	177	199	14.9104
((..(((........)))))))	chr21:35446336-35446628(+)$1	1	79	101	15.7799
(((((((........)))))))	chr2:3623204-3623493(+)$1	1	39	61	14.9296
(((.(((.........)))..)	chr21:45740096-45740344(+)$1	1	163	185	8.9097
...((((........))))...	chr16:84733717-84734003(+)$1	1	100	122	15.2061
..(((((........)))))))	chr11:67008061-67008279(+)$1	1	161	183	14.9963
(...(((........)))..))	chr14:60716520-60716789(+)$1	1	44	66	15.0489
(((((.(........).)))).	chr15:89877733-89878054(-)$1	1	108	130	12.8008
(((...(........)...)))	chr2:114353326-114353670(+)$1	1	140	162	14.5735
(.(((((........))))).)	chr20:48552992-48553387(+)$1	1	46	68	15.2369
(((((((........)))))))	chr22:49925215-49925496(-)$1	1	33	55	14.9296
(((.(((........)))..))	chr15:64125786-64126067(-)$1	1	9	31	15.5196
(.(((((........))))).)	chr2:113403625-113403946(+)$1	1	228	250	15.2782
.((((((........)))))).	chr19:2270402-2270678(+)$1	1	241	263	13.7697
.((((((........)).))))	chr12:132402728-132402988(+)$1	1	179	201	13.3189
.((((((........)))))).	chr6:74230135-74230370(-)$1	1	207	229	11.9396
(..((((........))))...	chr22:50034635-50034893(-)$1	1	179	201	12.8772
.((((((........)))))).	chr14:102515875-102516152(+)$1	1	176	198	13.6742
(((...(........)..))))	chr15:29403312-29403592(+)$1	1	14	36	12.9718
.((.(((........)))...)	chr1:31970333-31970564(-)$1	1	188	210	15.2859
))(((.(........).)))((	chr19:3698783-3699036(-)$1	1	175	197	14.8160
((.((((........))))..)	chr3:169482704-169482922(-)$1	1	120	142	14.6863
.((((((........).)))))	chr4:103748200-103748455(-)$1	1	167	189	15.1150
(((.(((........)))))))	chr17:72768084-72768404(-)$1	1	282	304	15.7043
((..(((........)))..))	chr20:60718859-60719138(+)$1	1	70	92	14.8409
..(((((........)))))..	chr1:155658345-155658603(-)$1	1	68	90	15.1217
(.(((((........))))).)	chr21:46493847-46494141(+)$1	1	232	254	15.2123
(.(((((........))))).)	chr10:75758880-75759182(+)$1	1	161	183	14.8637
))(((((........)))))))	chr5:180670480-180670732(-)$1	1	170	192	13.9721
((..(((........)))..))	chr10:976897-977191(-)$1	1	120	142	15.4093
(((.(((........))).)))	chr12:56556303-56556562(-)$1	1	201	223	15.2274
...((((........)))))))	chr16:89007032-89007284(-)$1	1	39	61	14.2539
..(((((........)))))..	chr3:133380508-133380801(-)$1	1	261	283	15.2872
(((.(((........))).)))	chr17:80230606-80230864(-)$1	1	116	138	15.1282
(((.(((........))).)))	chr5:177632137-177632386(+)$1	1	72	94	15.2274
(((((((........))))..)	chr12:69004785-69005078(+)$1	1	6	28	14.2022
...((((........))))..)	chr7:150645349-150645602(-)$1	1	221	243	14.1759
).(((((........)))))((	chr6:158244567-158244849(+)$1	1	208	230	13.0913
(((.(((........)))))))	chr19:46697289-46697535(-)$1	1	201	223	15.1117
((((.((........))...))	chr16:88728798-88729035(-)$1	1	205	227	13.5022

#PSSM
e : 0.16	d : 0.13	g : 0.11	b : 0.11	! : 0.07	c : 0.05	f : 0.05	[ : 0.05	" : 0.03	h : 0.03	A : 0.03	$ : 0.03	i : 0.01	a : 0.01	: : 0.01	# : 0.01	
e : 0.18	d : 0.16	g : 0.09	b : 0.09	[ : 0.09	f : 0.09	" : 0.07	! : 0.05	c : 0.03	$ : 0.03	i : 0.01	h : 0.01	: : 0.01	
e : 0.30	! : 0.11	d : 0.11	g : 0.09	f : 0.09	" : 0.05	[ : 0.05	c : 0.05	b : 0.03	$ : 0.03	i : 0.01	h : 0.01	
e : 0.22	d : 0.20	[ : 0.18	! : 0.09	g : 0.09	" : 0.07	f : 0.05	c : 0.03	i : 0.01	
c : 0.35	e : 0.20	d : 0.18	g : 0.09	f : 0.05	" : 0.03	a : 0.01	i : 0.01	[ : 0.01	
c : 0.32	e : 0.20	d : 0.15	g : 0.09	[ : 0.07	f : 0.05	" : 0.03	b : 0.03	i : 0.01	
c : 0.32	e : 0.18	d : 0.15	a : 0.13	g : 0.09	f : 0.05	b : 0.03	i : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
c : 0.30	e : 0.18	d : 0.15	a : 0.13	g : 0.09	f : 0.05	b : 0.03	i : 0.01	r : 0.01	
c : 0.32	e : 0.18	d : 0.15	g : 0.09	] : 0.07	f : 0.05	b : 0.03	a : 0.01	i : 0.01	3 : 0.01	2 : 0.01	
c : 0.35	e : 0.20	d : 0.16	g : 0.09	f : 0.05	] : 0.03	3 : 0.03	i : 0.01	2 : 0.01	
e : 0.28	d : 0.20	] : 0.11	g : 0.09	2 : 0.07	c : 0.05	3 : 0.05	f : 0.05	b : 0.01	i : 0.01	h : 0.01	
e : 0.30	2 : 0.15	g : 0.09	d : 0.09	b : 0.07	f : 0.07	c : 0.05	3 : 0.05	i : 0.01	] : 0.01	9 : 0.01	h : 0.01	= : 0.01	
d : 0.15	e : 0.13	g : 0.11	] : 0.11	2 : 0.09	f : 0.09	b : 0.07	3 : 0.05	c : 0.03	h : 0.03	i : 0.01	9 : 0.01	F : 0.01	= : 0.01	4 : 0.01	
e : 0.18	d : 0.15	g : 0.13	c : 0.07	f : 0.07	2 : 0.05	b : 0.05	3 : 0.03	] : 0.03	h : 0.03	: : 0.03	i : 0.01	a : 0.01	9 : 0.01	F : 0.01	= : 0.01	4 : 0.01	

#score	770.727265580326
#seq	53
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_transcript_m2_run1.txt

#BEAR
eeeeffffff!!aooooooa22ffffff]eee	chr18:55233578-55233853(-)$1	275	75	107	10.8742
$$$$$bb!!ddddoooooodddd]bb333ccc	chr19:35648223-35648452(+)$1	229	143	175	14.8383
%ccc!!eeeeebboooooobb22eeeee333c	chr11:119207060-119207277(+)$1	217	17	49	12.0870
"""ffffff[cccooooooccc22ffffffff	chr5:175957754-175957977(-)$1	223	119	151	13.2111
ccc[a[ccc!!ddddmmmmdddd]ccca]ccc	chr9:134133521-134133787(-)$1	266	12	44	10.6685
e[bb[bb!!ddddoooooodddd22bb]bb]e	chr2:86719365-86719800(+)$1	435	396	428	14.3166
[dddd[dddd[cccooooooccc]dddd]ddd	chr19:6534871-6535187(+)$1	316	188	220	12.0725
c!!dddd!!ddddoooooodddd]dddd22cc	chr7:6502105-6502350(-)$1	245	109	141	15.3435
:dddd"""eeeeeooooooeeeee333dddd:	chr7:4794901-4795114(+)$1	213	85	117	11.7645
bb"""ccc[ddddoooooodddd]ccc333bb	chr5:176869416-176869689(+)$1	273	14	46	15.2939
dd[eeeee[ddddoooooodddd]eeeeeddd	chr21:48084304-48084571(+)$1	267	6	38	14.7841
"""ccc!!ddddpppppppdddd333ccc333	chr6:53133561-53133773(-)$1	212	28	60	10.2089
""a[ffffff[bboooooobbffffff]a333	chr2:26410103-26410441(+)$1	338	78	110	12.0010
gggg$$$$$ddddooooooddddgggggggii	chr5:154185341-154185568(+)$1	227	65	97	14.2551
gggggg!!eeeeeooooooeeeee22gggggg	chr5:40827324-40827578(-)$1	254	93	125	13.1909
d[bb[a[bb[cccooooooccc22bb]a]bbd	chr10:126848718-126848992(-)$1	274	191	223	13.6265
hhhhha!!bb[bboooooobb333bb22a]hh	chr6:30692697-30692921(+)$1	224	6	38	11.6819
feeeeeccc[ddddnnnnndddd]ccc]eeee	chr1:172524924-172525182(+)$1	258	63	95	11.5988
b"""ffffffcccooooooccc22ffffff44	chr11:118472314-118472564(+)$1	250	203	235	13.2223
eeeeee[bb[cccooooooccc]bb]eeeee2	chr22:41924382-41924631(+)$1	249	196	228	12.7108
hh[bb[bb!!cccooooooccc22bb]bb]hh	chr16:30676582-30676809(+)$1	227	91	123	12.9604
b!!eeeee!!cccooooooccc22eeeee22b	chr5:41918684-41918928(+)$1	244	16	48	14.3213
ggggggcccddddoooooodddd]ccc]gggg	chr19:3061151-3061355(-)$1	204	1	33	15.3604
cc[cccddddddddnnnnndddd4444dddd]	chr1:167522614-167522865(-)$1	251	209	241	11.7304
=======[a[cccooooooccc]a========	chr5:162864635-162864907(+)$1	272	232	264	15.1858
dd[eeeee[ddddoooooodddd]eeeee]dd	chr1:55317634-55317893(-)$1	259	174	206	14.9354
!!dddd[a[ddddoooooodddd]a]dddd22	chr5:5457677-5457935(+)$1	258	34	66	15.5586
hh"""ddddddddoooooodddd333ddddhh	chr1:27731647-27731899(-)$1	252	142	174	14.6385
fffdddd[ccc[aooooooaccc333dddd22	chr17:61670458-61670691(+)$1	233	39	71	13.5731
d"""dddd!!ddddnnnnndddd22dddd22d	chr12:124071294-124071534(+)$1	240	126	158	11.9459
!ccc####bb[bboooooobb333bb4444cc	chr17:7143721-7143943(-)$1	222	177	209	13.3733
[eeeee[a"""ddddmmmmdddd333a]eeee	chr19:1408144-1408414(+)$1	270	187	219	10.8833
gggg!!bb!!cccooooooccc22bb22gggg	chr11:118915019-118915323(-)$1	304	73	105	14.4868
===========rrrrrrrrr===========d	chr6:37141851-37142091(+)$1	240	36	68	10.0870
d[bb[a[bb[cccooooooccc22bb]a]bbd	chr10:126848647-126848912(-)$1	265	111	143	13.6265
eegggggggddddoooooodddd]ggggggg7	chr11:319624-319874(-)$1	250	11	43	14.6955
dddd[eeeee!!aooooooa22eeeee]dddd	chr12:51636845-51637078(+)$1	233	64	96	11.9526
:dddd"""eeeeeooooooeeeee333dddd:	chr7:4794873-4795101(+)$1	228	113	145	11.7645
========!!cccooooooccc22========	chr6:33375608-33375864(+)$1	256	198	230	15.9118
a[a[============lll============2	chr7:5569884-5570134(-)$1	250	192	224	10.9328
e[bb!!a!!ddddoooooodddd4444a22bb	chr16:23701162-23701420(+)$1	258	149	181	15.4744
fffdddd"""ddddnnnnndddd22dddd]ff	chr20:30388890-30389142(+)$1	252	203	235	11.3243
:dddd"""addddoooooodddd]a333dddd	chr19:48887635-48887839(-)$1	204	15	47	14.9996
eeeee!!cccddddnnnnndddd]ccc22eee	chr22:22115755-22115995(-)$1	240	18	50	11.6499
c[ggggggg[ddddnnnnndddd]ggggggg2	chr1:29068942-29069189(+)$1	247	29	61	12.3411
ee[accc"""ddddnnnnndddd22ccc333a	chr11:125484118-125484320(+)$1	202	32	64	13.0597
cc[cccbb!!ddddnnnnndddd333bb4444	chr15:91425781-91426032(+)$1	251	200	232	12.5421
!bb[bb[bbddddoooooodddd]bb22bb]b	chr6:139694520-139694819(-)$1	299	227	259	13.3926
ddd[eeeee[cccooooooccceeeee4444d	chr19:36640977-36641199(+)$1	222	132	164	13.6811
[dddd[a[eeeeeooooooeeeeea]dddd33	chr12:49524980-49525182(-)$1	202	91	123	13.2481
cccceeeee!!bboooooobb]eeeee]ccc:	chr7:6695264-6695538(+)$1	274	81	113	11.4738
ffffbbeeeeecccooooooccc]eeeee>>>	chr1:54693833-54694101(-)$1	268	131	163	11.1652

#otherMatches

#Seq PSSM
CAUCCUUUAACAGAAGAAGCAAUUGAAGAGAU	chr18:55233578-55233853(-)$1	275	75	107	10.8742
AACUAUCAUGGACAUUCAGGUCCCGACACGAG	chr19:35648223-35648452(+)$1	229	143	175	14.8383
CGCAAUUGCCCGCUCUGCCGCCGGGGCAUCCU	chr11:119207060-119207277(+)$1	217	17	49	12.0870
CCCUCGGAUGGUGAGUCGGCAUGGGUCCGAUG	chr5:175957754-175957977(-)$1	223	119	151	13.2111
CGGCCACGGACGCUCAGCUGAGCCCCGGUCUG	chr9:134133521-134133787(-)$1	266	12	44	10.6685
UUAAAUGGAAUUUUAAUUUAAAUGACGCUUUG	chr2:86719365-86719800(+)$1	435	396	428	14.3166
UCACCGAGGUCGGAAUAACGUCCAGCCUGGGU	chr19:6534871-6535187(+)$1	316	188	220	12.0725
GACGUGGAAGUCCUUCGUUGGAUGUCACAACA	chr7:6502105-6502350(-)$1	245	109	141	15.3435
CUACCGGACGGCCGACAAAGGCUGGCAGGUGA	chr7:4794901-4795114(+)$1	213	85	117	11.7645
GCCCCGGCCGGCCCAGAUAGGUCUGCCUCUGC	chr5:176869416-176869689(+)$1	273	14	46	15.2939
CCUGGCUUCUGCACACUCCUGCGAAAGUCGGU	chr21:48084304-48084571(+)$1	267	6	38	14.7841
AUAAGAUUUCUAACAUUUCUGGGCUCUCUGAC	chr6:53133561-53133773(-)$1	212	28	60	10.2089
AAGGUGGGCGAGUCCUCUAGCCGCCCAGCCCC	chr2:26410103-26410441(+)$1	338	78	110	12.0010
AACCUGGUGACAGUAUUUUUUGUGGUUUCUGU	chr5:154185341-154185568(+)$1	227	65	97	14.2551
UGCUUUAAACUGCAAGCUGGCAGUGGAGGGCA	chr5:40827324-40827578(-)$1	254	93	125	13.1909
CACUGCGCCACUCAGggaggaggaggaggagg	chr10:126848718-126848992(-)$1	274	191	223	13.6265
GAGGUGUCAGCAGUAUUAUCUCCACUUUCAAU	chr6:30692697-30692921(+)$1	224	6	38	11.6819
CUGACUUGUUUUUUUAAACAGAAUACAGAGUC	chr1:172524924-172525182(+)$1	258	63	95	11.5988
UUCAAGAUGUCUAAAAGAAUGGUUAUGUCUGU	chr11:118472314-118472564(+)$1	250	203	235	13.2223
GGCAGUGCCCUCAACAGAAUGAAGGAACUGCA	chr22:41924382-41924631(+)$1	249	196	228	12.7108
CCCGCCGGCCGUCUCCUUUGGCUCCCUGCAGG	chr16:30676582-30676809(+)$1	227	91	123	12.9604
UGGGUAGUCCUUCAAAGUAGAAUCACUACAAG	chr5:41918684-41918928(+)$1	244	16	48	14.3213
GGGGGGGCGCCGCAGCUGCGCGGCCGCUCCCU	chr19:3061151-3061355(-)$1	204	1	33	15.3604
GCCCGCUGCAGCUCUCCGUGAGCAACCUGCAG	chr1:167522614-167522865(-)$1	251	209	241	11.7304
GCGCGGGGCGAGGAGUAGGUCUGGCCCGCGCC	chr5:162864635-162864907(+)$1	272	232	264	15.1858
gauuuggagucagacaagccugaguccaguuc	chr1:55317634-55317893(-)$1	259	174	206	14.9354
UUGAUCAUGAUCAUUUUUUUGAUGAAGAUCUU	chr5:5457677-5457935(+)$1	258	34	66	15.5586
GCUCAGAGCAGCUGGCCCAGGCUCCAGCUCGC	chr1:27731647-27731899(-)$1	252	142	174	14.6385
UCCCUUUACUGUGUGUACUCCAGGACGAAGAA	chr17:61670458-61670691(+)$1	233	39	71	13.5731
CAAAAAUAGUGAUGUUCACCAUUGAUAUUGGG	chr12:124071294-124071534(+)$1	240	126	158	11.9459
AUCAAUAAAGAGGAAACCACCAAGCUGAACUG	chr17:7143721-7143943(-)$1	222	177	209	13.3733
GGGGAGUCCAGGGCGCCGUCGCCGCCGCCUCC	chr19:1408144-1408414(+)$1	270	187	219	10.8833
CUUCCUCUGUGCAUCACUCUGCUAGGUUGGGG	chr11:118915019-118915323(-)$1	304	73	105	14.4868
CCCCUCUCUUGUCAGAUGCCCGAGGGAGGGGA	chr6:37141851-37142091(+)$1	240	36	68	10.0870
CACUGCGCCACUCAGggaggaggaggaggagg	chr10:126848647-126848912(-)$1	265	111	143	13.6265
UGCUGAUCUUCCAGGCCUAUGGAUAGAUCAGG	chr11:319624-319874(-)$1	250	11	43	14.6955
ACUUCUGCUUUCGUAUCUCCUCAGGCAAAAGU	chr12:51636845-51637078(+)$1	233	64	96	11.9526
CUACCGGACGGCCGACAAAGGCUGGCAGGUGA	chr7:4794873-4795101(+)$1	228	113	145	11.7645
ACUAUCUUGCAAGUUCAAUUUUAGAGGGUGGU	chr6:33375608-33375864(+)$1	256	198	230	15.9118
GGCGCGCUCCGGGGGUGCCGCUCUCGGGGCGG	chr7:5569884-5570134(-)$1	250	192	224	10.9328
CCGCUACGCCCGCACUAUGGUGGACAAGCUGC	chr16:23701162-23701420(+)$1	258	149	181	15.4744
ACUCAUGAAUGUCUCGAUUAGACUCCAUGUAG	chr20:30388890-30389142(+)$1	252	203	235	11.3243
CGGCACCUGUAACUGCAAUGUUGUCCUCUGCC	chr19:48887635-48887839(-)$1	204	15	47	14.9996
AGCUAUCAUGUGUAGUAGAUGCAUCAUUUUGG	chr22:22115755-22115995(-)$1	240	18	50	11.6499
AUUGGCUUCUCCUAUUCUUUGGGUGAAGCUGC	chr1:29068942-29069189(+)$1	247	29	61	12.3411
AUGUGUCUGCAUGAGGGGAUCAUAUGACUUGG	chr11:125484118-125484320(+)$1	202	32	64	13.0597
UUUUCACUUUGUGAUUAUUUCACUUUAGAUGC	chr15:91425781-91426032(+)$1	251	200	232	12.5421
AGCAGCACCCCCGGCGGCUCGGGCGGCAGCAG	chr6:139694520-139694819(-)$1	299	227	259	13.3926
GCCCUGGCACACCCUUCACGGUUGCUACCCAG	chr19:36640977-36641199(+)$1	222	132	164	13.6811
UAGCCACUAUGGUGAGUAAGCCGUGCGGCUCC	chr12:49524980-49525182(-)$1	202	91	123	13.2481
AGUCCCAUUUCACAAAUUGGUUAGUGGAGGCA	chr7:6695264-6695538(+)$1	274	81	113	11.4738
CGAGCUAGGAGGGAACUUCCUCCACUCCUUUC	chr1:54693833-54694101(-)$1	268	131	163	11.1652

#DB
((((((((((..(......)..)))))).)))	chr18:55233578-55233853(-)$1	1	75	107	10.8742
.....((..((((......)))).))...)))	chr19:35648223-35648452(+)$1	1	143	175	14.8383
.(((..(((((((......))..)))))...)	chr11:119207060-119207277(+)$1	1	17	49	12.0870
...((((((.(((......)))..))))))))	chr5:175957754-175957977(-)$1	1	119	151	13.2111
(((.(.(((..((((....)))).)))).)))	chr9:134133521-134133787(-)$1	1	12	44	10.6685
(.((.((..((((......))))..)).)).)	chr2:86719365-86719800(+)$1	1	396	428	14.3166
.((((.((((.(((......))).)))).)))	chr19:6534871-6535187(+)$1	1	188	220	12.0725
(..((((..((((......)))).))))..))	chr7:6502105-6502350(-)$1	1	109	141	15.3435
.((((...(((((......)))))...)))).	chr7:4794901-4795114(+)$1	1	85	117	11.7645
((...(((.((((......)))).)))...))	chr5:176869416-176869689(+)$1	1	14	46	15.2939
((.(((((.((((......)))).))))))))	chr21:48084304-48084571(+)$1	1	6	38	14.7841
...(((..((((.......))))...)))...	chr6:53133561-53133773(-)$1	1	28	60	10.2089
..(.((((((.((......)))))))).)...	chr2:26410103-26410441(+)$1	1	78	110	12.0010
((((.....((((......)))))))))))))	chr5:154185341-154185568(+)$1	1	65	97	14.2551
((((((..(((((......)))))..))))))	chr5:40827324-40827578(-)$1	1	93	125	13.1909
(.((.(.((.(((......)))..)).).)))	chr10:126848718-126848992(-)$1	1	191	223	13.6265
((((((..((.((......))...))..).))	chr6:30692697-30692921(+)$1	1	6	38	11.6819
)((((((((.((((.....)))).))).))))	chr1:172524924-172525182(+)$1	1	63	95	11.5988
(...(((((((((......)))..))))))..	chr11:118472314-118472564(+)$1	1	203	235	13.2223
((((((.((.(((......))).)).))))).	chr22:41924382-41924631(+)$1	1	196	228	12.7108
((.((.((..(((......)))..)).)).))	chr16:30676582-30676809(+)$1	1	91	123	12.9604
(..(((((..(((......)))..)))))..)	chr5:41918684-41918928(+)$1	1	16	48	14.3213
(((((((((((((......)))).))).))))	chr19:3061151-3061355(-)$1	1	1	33	15.3604
((.(((((((((((.....))))....)))).	chr1:167522614-167522865(-)$1	1	209	241	11.7304
(((((((.(.(((......))).)))))))))	chr5:162864635-162864907(+)$1	1	232	264	15.1858
((.(((((.((((......)))).))))).))	chr1:55317634-55317893(-)$1	1	174	206	14.9354
..((((.(.((((......)))).).))))..	chr5:5457677-5457935(+)$1	1	34	66	15.5586
((...((((((((......))))...))))))	chr1:27731647-27731899(-)$1	1	142	174	14.6385
(((((((.(((.(......))))...))))..	chr17:61670458-61670691(+)$1	1	39	71	13.5731
(...((((..((((.....))))..))))..)	chr12:124071294-124071534(+)$1	1	126	158	11.9459
.(((....((.((......))...))....))	chr17:7143721-7143943(-)$1	1	177	209	13.3733
.(((((.(...((((....))))...).))))	chr19:1408144-1408414(+)$1	1	187	219	10.8833
((((..((..(((......)))..))..))))	chr11:118915019-118915323(-)$1	1	73	105	14.4868
(((((((((((.........)))))))))))(	chr6:37141851-37142091(+)$1	1	36	68	10.0870
(.((.(.((.(((......)))..)).).)))	chr10:126848647-126848912(-)$1	1	111	143	13.6265
(((((((((((((......)))).))))))).	chr11:319624-319874(-)$1	1	11	43	14.6955
((((.(((((..(......)..))))).))))	chr12:51636845-51637078(+)$1	1	64	96	11.9526
.((((...(((((......)))))...)))).	chr7:4794873-4795101(+)$1	1	113	145	11.7645
((((((((..(((......)))..))))))))	chr6:33375608-33375864(+)$1	1	198	230	15.9118
(.(.((((((((((((...)))))))))))).	chr7:5569884-5570134(-)$1	1	192	224	10.9328
(.((..(..((((......))))....)..))	chr16:23701162-23701420(+)$1	1	149	181	15.4744
(((((((...((((.....))))..)))).))	chr20:30388890-30389142(+)$1	1	203	235	11.3243
.((((...(((((......)))).)...))))	chr19:48887635-48887839(-)$1	1	15	47	14.9996
(((((..(((((((.....)))).)))..)))	chr22:22115755-22115995(-)$1	1	18	50	11.6499
(.(((((((.((((.....)))).))))))).	chr1:29068942-29069189(+)$1	1	29	61	12.3411
((.((((...((((.....))))..)))...)	chr11:125484118-125484320(+)$1	1	32	64	13.0597
((.(((((..((((.....))))...))....	chr15:91425781-91426032(+)$1	1	200	232	12.5421
.((.((.((((((......)))).))..)).)	chr6:139694520-139694819(-)$1	1	227	259	13.3926
(((.(((((.(((......))))))))....)	chr19:36640977-36641199(+)$1	1	132	164	13.6811
.((((.(.(((((......)))))).))))..	chr12:49524980-49525182(-)$1	1	91	123	13.2481
)((((((((..((......)).))))).))).	chr7:6695264-6695538(+)$1	1	81	113	11.4738
((((((((((((((......))).)))))...	chr1:54693833-54694101(-)$1	1	131	163	11.1652

#PSSM
e : 0.13	d : 0.13	c : 0.11	g : 0.07	f : 0.07	" : 0.05	[ : 0.05	: : 0.05	b : 0.05	h : 0.05	= : 0.05	! : 0.05	$ : 0.01	% : 0.01	a : 0.01	
d : 0.17	e : 0.13	c : 0.11	[ : 0.11	" : 0.09	g : 0.07	! : 0.05	h : 0.05	= : 0.05	f : 0.05	b : 0.03	$ : 0.01	
d : 0.15	" : 0.11	[ : 0.11	g : 0.11	e : 0.09	b : 0.09	c : 0.07	= : 0.05	f : 0.05	! : 0.03	a : 0.03	$ : 0.01	h : 0.01	
d : 0.19	e : 0.15	c : 0.11	g : 0.11	[ : 0.09	b : 0.09	" : 0.07	= : 0.05	f : 0.03	$ : 0.01	h : 0.01	a : 0.01	
d : 0.19	e : 0.17	f : 0.07	[ : 0.07	c : 0.07	g : 0.07	= : 0.07	! : 0.05	b : 0.05	$ : 0.03	" : 0.03	a : 0.01	h : 0.01	# : 0.01	
e : 0.17	d : 0.11	c : 0.09	f : 0.07	b : 0.07	! : 0.07	[ : 0.07	g : 0.07	= : 0.07	" : 0.05	a : 0.05	$ : 0.01	# : 0.01	
e : 0.15	d : 0.13	[ : 0.11	b : 0.09	c : 0.09	f : 0.07	! : 0.07	= : 0.07	" : 0.05	g : 0.03	a : 0.03	$ : 0.01	# : 0.01	
e : 0.15	! : 0.13	b : 0.13	c : 0.09	" : 0.09	f : 0.07	d : 0.07	[ : 0.05	= : 0.05	a : 0.03	g : 0.03	$ : 0.01	# : 0.01	
! : 0.19	e : 0.17	b : 0.11	c : 0.09	f : 0.07	d : 0.07	[ : 0.07	" : 0.05	a : 0.03	= : 0.03	g : 0.03	$ : 0.01	
d : 0.32	[ : 0.15	! : 0.15	e : 0.13	f : 0.05	" : 0.05	b : 0.03	c : 0.03	= : 0.03	
d : 0.44	c : 0.23	e : 0.11	! : 0.07	[ : 0.07	= : 0.03	" : 0.01	
d : 0.48	c : 0.24	b : 0.09	e : 0.07	! : 0.03	[ : 0.01	r : 0.01	= : 0.01	
d : 0.46	c : 0.24	b : 0.09	e : 0.07	a : 0.05	p : 0.01	r : 0.01	= : 0.01	
o : 0.71	d : 0.19	c : 0.03	p : 0.01	r : 0.01	= : 0.01	
o : 0.75	n : 0.15	d : 0.03	p : 0.01	r : 0.01	= : 0.01	
o : 0.75	n : 0.15	m : 0.03	p : 0.01	r : 0.01	= : 0.01	
o : 0.75	n : 0.15	m : 0.03	p : 0.01	r : 0.01	l : 0.01	
o : 0.75	n : 0.15	m : 0.03	p : 0.01	r : 0.01	l : 0.01	
o : 0.75	n : 0.15	m : 0.03	p : 0.01	r : 0.01	l : 0.01	
d : 0.48	c : 0.21	b : 0.09	e : 0.07	a : 0.05	o : 0.03	r : 0.01	= : 0.01	
d : 0.48	c : 0.26	b : 0.09	e : 0.07	2 : 0.03	= : 0.03	
d : 0.48	c : 0.26	e : 0.07	2 : 0.05	3 : 0.03	= : 0.03	f : 0.01	] : 0.01	
d : 0.48	2 : 0.17	e : 0.13	c : 0.05	f : 0.03	3 : 0.03	] : 0.03	= : 0.03	
] : 0.30	2 : 0.23	e : 0.15	3 : 0.13	f : 0.03	4 : 0.03	= : 0.03	g : 0.01	b : 0.01	a : 0.01	
b : 0.17	e : 0.15	3 : 0.13	c : 0.09	2 : 0.09	f : 0.07	= : 0.07	g : 0.05	a : 0.05	d : 0.03	4 : 0.03	
b : 0.17	e : 0.15	3 : 0.15	c : 0.11	f : 0.07	d : 0.07	= : 0.07	g : 0.05	] : 0.05	4 : 0.03	2 : 0.01	
e : 0.17	d : 0.15	c : 0.13	f : 0.07	3 : 0.07	g : 0.07	= : 0.07	] : 0.05	2 : 0.05	4 : 0.05	b : 0.03	a : 0.01	
d : 0.21	] : 0.13	e : 0.11	a : 0.07	g : 0.07	2 : 0.07	= : 0.07	f : 0.05	3 : 0.05	c : 0.03	b : 0.03	4 : 0.03	
d : 0.21	e : 0.13	g : 0.11	] : 0.09	3 : 0.07	= : 0.07	b : 0.05	2 : 0.05	4 : 0.05	f : 0.03	c : 0.03	a : 0.03	
d : 0.21	g : 0.11	e : 0.09	3 : 0.09	b : 0.07	2 : 0.07	] : 0.07	= : 0.07	c : 0.05	4 : 0.05	f : 0.03	> : 0.01	
d : 0.15	e : 0.09	c : 0.09	3 : 0.09	g : 0.09	b : 0.07	2 : 0.07	= : 0.07	h : 0.05	4 : 0.05	f : 0.03	] : 0.03	i : 0.01	> : 0.01	
d : 0.19	e : 0.09	c : 0.09	2 : 0.09	b : 0.07	: : 0.05	3 : 0.05	g : 0.05	h : 0.05	f : 0.03	4 : 0.03	= : 0.03	i : 0.01	] : 0.01	7 : 0.01	a : 0.01	> : 0.01	

#score	680.0290213491119
#seq	52
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_UTR_m3_run1.txt

#BEAR
%===========ppppppp===========	chr3:133476588-133476830(+)$1	242	92	122	17.8260
ddccc!!eeeeepppppppeeeee22ccc2	chr20:17608164-17608395(-)$1	231	2	32	17.5448
bb[iiiiiiiiipppppppiiiiiiiii]b	chr17:48827772-48828232(+)$1	460	70	100	17.0527
ggggg"""ddddpppppppdddd333gggg	chr3:50112604-50112863(+)$1	259	225	255	18.3016
gggggeeeee[apppppppa]eeeee]ggg	chr7:75609554-75609784(+)$1	230	94	124	16.2818
ggggggg"""bbpppppppbb333gggggg	chr14:39648332-39648551(+)$1	219	46	76	16.7549
:eeeee[eeeeepppppppeeeee]eeeee	chr17:79817090-79817364(-)$1	274	47	77	15.2065
c[bbbb[eeeeepppppppeeeee]bb]bb	chr9:124088759-124089062(+)$1	303	120	150	15.7798
ggggggg"""bbpppppppbb333gggggg	chr14:39648286-39648532(+)$1	246	92	122	16.7549
b[ccc!!ddddrrrrrrrrrdddd22cccb	chr9:117044456-117044671(+)$1	215	176	206	14.0618
"eeeee[ddddrrrrrrrrrdddd333eee	chr13:99037807-99038170(+)$1	363	39	69	13.1172
ddd!!gggggggrrrrrrrrrgggggggdd	chr19:50001073-50001288(+)$1	215	42	72	13.0869
ccc[bb[bb[bbpppppppbb]bb]bb]cc	chr1:200378711-200378952(-)$1	241	183	213	14.8469
ggggg!!ddddrrrrrrrrrddddgggggg	chr11:122929515-122929776(-)$1	261	77	107	14.0913
h"""hhhhhhhhppppppphhhhhhhhhhh	chr11:129979360-129979597(+)$1	237	185	215	13.9449
fffffdddd[bbpppppppbb]dddd22ff	chr11:68192529-68192774(+)$1	245	126	156	14.2892
dddd####ddddpppppppdddd22dddd]	chr8:8750947-8751161(-)$1	214	27	57	16.1058
ddd!!gggggggpppppppggggggg]ddd	chr9:139734795-139735068(+)$1	273	113	143	16.3219
fffffgggggggpppppppggggggg:fff	chr2:20251102-20251447(-)$1	345	183	213	15.1802
ggggggccc[bbpppppppbb]ccc22ggg	chr2:216229583-216229808(-)$1	225	175	205	16.4650
bb[cccffffffpppppppffffff]cccb	chr19:51856278-51856507(-)$1	229	156	186	15.6169
:::dddd[ddddpppppppdddd333dddd	chr3:133474112-133474368(+)$1	256	199	229	13.6150
!bb$$$$$ddddpppppppdddd333bb22	chr3:58140430-58140677(+)$1	247	39	69	16.0258
c[eeeee!!cccrrrrrrrrrccc22eeee	chr16:2802585-2802893(+)$1	308	81	111	12.7410
a[bbhhhhhhhhppppppphhhhhhhh]bb	chr19:1250116-1250380(+)$1	264	188	218	13.6537
###ccc!!ddddpppppppddddccc4444	chr12:76449807-76450042(-)$1	235	88	118	17.5101
ggggg!!ddddrrrrrrrrrddddgggggg	chr11:122929576-122929785(-)$1	209	86	116	14.0913
$$$$$gggggggrrrrrrrrrggggggg44	chr11:64536382-64536664(-)$1	282	120	150	13.0548
!!ccc[ffffffpppppppffffffccc22	chr13:107211692-107212027(-)$1	335	8	38	16.4281
iiiiiiffffffpppppppffffff]iiii	chr19:18530285-18530584(+)$1	299	237	267	16.4217
%===========ppppppp===========	chr3:133476654-133476890(+)$1	236	26	56	17.8260
ffff####ddddpppppppdddd4444fff	chr3:120394539-120394800(-)$1	261	188	218	16.5818
d===========ppppppp===========	chr3:133476630-133476854(+)$1	224	50	80	18.1307
c[ccc####cccpppppppccccccccccc	chr15:72501908-72502140(-)$1	232	6	36	17.5252
e[ccc[ffffffpppppppffffffccc]e	chr17:1675077-1675358(+)$1	281	89	119	16.2987
!!ccc[a[a[bbpppppppbb]aa]ccc]e	chr2:62932966-62933255(+)$1	289	17	47	17.4024
$$ccc[ffffffpppppppffffffccc55	chr13:99029974-99030281(+)$1	307	16	46	14.5906
c"""dddd[cccpppppppccc]dddd22c	chr17:48797010-48797278(+)$1	268	114	144	15.4713
d[a!!ccca[bbpppppppbb]a]ccc22a	chr22:42229146-42229420(+)$1	274	131	161	16.2970
iiiiiiieeeeepppppppeeeeegggggg	chr3:49050512-49050767(+)$1	255	142	172	17.4663
dd[a[a!!ddddpppppppdddd]a]a]dd	chr17:80036636-80036900(-)$1	264	192	222	17.1310
:ddddccc[cccpppppppcccccc]dddd	chr17:62500006-62500334(-)$1	328	295	325	14.8045
cc[bb"""ddddpppppppdddd]bbccc]	chr19:572529-572799(+)$1	270	230	260	16.6370
!!ccc!!eeeeepppppppeeeee22ccc2	chr9:116824858-116825075(-)$1	217	161	191	18.1889
###bb!!eeeeepppppppeeeee22bb33	chr19:580303-580559(+)$1	256	52	82	17.3812
ffff[bbeeeeepppppppeeeee22bb]f	chr12:862212-862526(+)$1	314	215	245	15.7406
cc[ccc[eeeeepppppppeeeee]ccccc	chr2:61575321-61575625(-)$1	304	91	121	17.6154

#otherMatches

#Seq PSSM
GUUUAAGGACUCUGCCCACGGGUUUUUAAA	chr3:133476588-133476830(+)$1	242	92	122	17.8260
GGGCAUCCUCCACACCCCCUGGGGUUUGCA	chr20:17608164-17608395(-)$1	231	2	32	17.5448
AUGUCUUCUUUUAUGGCAGAAAAGAGGGGA	chr17:48827772-48828232(+)$1	460	70	100	17.0527
CCUAGAGUGAUGUCUUUGCCAUUUUGCUGG	chr3:50112604-50112863(+)$1	259	225	255	18.3016
UUCUGCAGGCCGACCUGAGCAGCCUGCCAG	chr7:75609554-75609784(+)$1	230	94	124	16.2818
CUGUUUGAAGAGAGGCGUGCUAAACAGACA	chr14:39648332-39648551(+)$1	219	46	76	16.7549
CAAGGCUGCUUUAGGGAUCAAGGCUGCUUU	chr17:79817090-79817364(-)$1	274	47	77	15.2065
GAGGGCGGGCAGACAGCCCCUGCCAGCACC	chr9:124088759-124089062(+)$1	303	120	150	15.7798
CUGUUUGAAGAGAGGCGUGCUAAACAGACA	chr14:39648286-39648532(+)$1	246	92	122	16.7549
AUAGGCCUGCGUCCCUCCCCCGCAUCCCUU	chr9:117044456-117044671(+)$1	215	176	206	14.0618
CUUCUUAAUCUCAAAUUAAUAGAUACAGGG	chr13:99037807-99038170(+)$1	363	39	69	13.1172
GGUUACCUAUGGCCCUCUUUCCCAUGGGAC	chr19:50001073-50001288(+)$1	215	42	72	13.0869
ccggcggcggugguaguggcggcggcggcg	chr1:200378711-200378952(-)$1	241	183	213	14.8469
uaugaugauggauuccaaaaccauucguag	chr11:122929515-122929776(-)$1	261	77	107	14.0913
UUGAAUCUGUUUACCUUAGAAAUAGAUAUU	chr11:129979360-129979597(+)$1	237	185	215	13.9449
CCACCGGCCUCAUCCGCCCUGUGGCCCUGG	chr11:68192529-68192774(+)$1	245	126	156	14.2892
UCCCAAUCGCGCCCUCCCAgcgccggggac	chr8:8750947-8751161(-)$1	214	27	57	16.1058
GCUUUCCUggggggcggggccccgggcggc	chr9:139734795-139735068(+)$1	273	113	143	16.3219
CAAGCGGAACCGCAGUGACCGGUUCUACAG	chr2:20251102-20251447(-)$1	345	183	213	15.1802
UUUGCUCCUGCACAUGCUUUGGAGGCCAGC	chr2:216229583-216229808(-)$1	225	175	205	16.4650
UCAUCCCUGCUCGGGAGGAGGGUGGUGGAG	chr19:51856278-51856507(-)$1	229	156	186	15.6169
AAUACUUCGGCUACUCGGGAGCCUUCAAGU	chr3:133474112-133474368(+)$1	256	199	229	13.6150
GGGGCUCUGUGGGGCUCAGUCACUAACCAG	chr3:58140430-58140677(+)$1	247	39	69	16.0258
GGUGCGAGUGGCGCAGUUGGAGCCCGUUGC	chr16:2802585-2802893(+)$1	308	81	111	12.7410
cagcccggcggcgcccggagcugccggcgc	chr19:1250116-1250380(+)$1	264	188	218	13.6537
UCACUUAAUCAAGGAGGAAUUGAAAGAAAA	chr12:76449807-76450042(-)$1	235	88	118	17.5101
uaugaugauggauuccaaaaccauucguag	chr11:122929576-122929785(-)$1	209	86	116	14.0913
UACCAAGUGUGGAGGGGCUGGCCACAUUGC	chr11:64536382-64536664(-)$1	282	120	150	13.0548
ACUUUGUUUGCUAGUCGACAGCAAGAAAUA	chr13:107211692-107212027(-)$1	335	8	38	16.4281
UGCGGGGCCGGGGGCGGGGCUCGGCGUCCG	chr19:18530285-18530584(+)$1	299	237	267	16.4217
GUUUAAGGACUCUGCCCACGGGUUUUUAAA	chr3:133476654-133476890(+)$1	236	26	56	17.8260
AGCUCUGAAUCCUAUUCCUGGAUGACUAGC	chr3:120394539-120394800(-)$1	261	188	218	16.5818
GUUUAAGGACUCUGCCCACGGGUUUUUAAA	chr3:133476630-133476854(+)$1	224	50	80	18.1307
AUGGAAAAGUGUGACGAGAACAUCCUGUGG	chr15:72501908-72502140(-)$1	232	6	36	17.5252
GCUGCGCAUAAAAUCCAGCUUUGUGGCACC	chr17:1675077-1675358(+)$1	281	89	119	16.2987
GAGGGGGUGGGCGUGAGGGGCGCCGUCCGC	chr2:62932966-62933255(+)$1	289	17	47	17.4024
CUCCUUGGCCUCUCAUGGUGAGGCCAGGUU	chr13:99029974-99030281(+)$1	307	16	46	14.5906
UAAUGGGCCGGGACCGAAACCUAGCCCCGG	chr17:48797010-48797278(+)$1	268	114	144	15.4713
GACGACAGCGGCGAGCUGGGUGGUCUGGAG	chr22:42229146-42229420(+)$1	274	131	161	16.2970
UGCCCUCUCUGCACGGGAAGCAGGGUGUGA	chr3:49050512-49050767(+)$1	255	142	172	17.4663
CUUGGAUUUGCAUAUUUAUUGCAUUGCUGG	chr17:80036636-80036900(-)$1	264	192	222	17.1310
AAAACGAGUAUUUUAAUGUGAUUUCUGUUU	chr17:62500006-62500334(-)$1	328	295	325	14.8045
GGUGCCGACCCGAAGCCGACGGGAGCCUGG	chr19:572529-572799(+)$1	270	230	260	16.6370
AAAGGAAGGGCCCACAGUUGGCUCACCCUG	chr9:116824858-116825075(-)$1	217	161	191	18.1889
UCACCUGCCUGCUGUGGUUGCAGGGUGGAC	chr19:580303-580559(+)$1	256	52	82	17.3812
CCGCUCGCCGCAGGAUGGAUGCGGACCGUG	chr12:862212-862526(+)$1	314	215	245	15.7406
AGUGAUGGAUCUAGCAAUGAGGUUAAUUCU	chr2:61575321-61575625(-)$1	304	91	121	17.6154

#DB
.(((((((((((.......)))))))))))	chr3:133476588-133476830(+)$1	1	92	122	17.8260
(((((..(((((.......)))))..))).	chr20:17608164-17608395(-)$1	1	2	32	17.5448
((.(((((((((.......))))))))).)	chr17:48827772-48828232(+)$1	1	70	100	17.0527
(((((...((((.......))))...))))	chr3:50112604-50112863(+)$1	1	225	255	18.3016
((((((((((.(.......).))))).)))	chr7:75609554-75609784(+)$1	1	94	124	16.2818
(((((((...((.......))...))))))	chr14:39648332-39648551(+)$1	1	46	76	16.7549
.(((((.(((((.......))))).)))))	chr17:79817090-79817364(-)$1	1	47	77	15.2065
(.((((.(((((.......))))).)).))	chr9:124088759-124089062(+)$1	1	120	150	15.7798
(((((((...((.......))...))))))	chr14:39648286-39648532(+)$1	1	92	122	16.7549
(.(((..((((.........))))..))))	chr9:117044456-117044671(+)$1	1	176	206	14.0618
.(((((.((((.........))))...)))	chr13:99037807-99038170(+)$1	1	39	69	13.1172
(((..(((((((.........)))))))))	chr19:50001073-50001288(+)$1	1	42	72	13.0869
(((.((.((.((.......)).)).)).))	chr1:200378711-200378952(-)$1	1	183	213	14.8469
(((((..((((.........))))))))))	chr11:122929515-122929776(-)$1	1	77	107	14.0913
(...((((((((.......)))))))))))	chr11:129979360-129979597(+)$1	1	185	215	13.9449
(((((((((.((.......)).))))..))	chr11:68192529-68192774(+)$1	1	126	156	14.2892
((((....((((.......))))..)))).	chr8:8750947-8751161(-)$1	1	27	57	16.1058
(((..(((((((.......))))))).)))	chr9:139734795-139735068(+)$1	1	113	143	16.3219
)))))(((((((.......))))))).(((	chr2:20251102-20251447(-)$1	1	183	213	15.1802
(((((((((.((.......)).)))..)))	chr2:216229583-216229808(-)$1	1	175	205	16.4650
((.(((((((((.......)))))).))))	chr19:51856278-51856507(-)$1	1	156	186	15.6169
...((((.((((.......))))...))))	chr3:133474112-133474368(+)$1	1	199	229	13.6150
.((.....((((.......))))...))..	chr3:58140430-58140677(+)$1	1	39	69	16.0258
(.(((((..(((.........)))..))))	chr16:2802585-2802893(+)$1	1	81	111	12.7410
(.((((((((((.......)))))))).))	chr19:1250116-1250380(+)$1	1	188	218	13.6537
...(((..((((.......)))))))....	chr12:76449807-76450042(-)$1	1	88	118	17.5101
(((((..((((.........))))))))))	chr11:122929576-122929785(-)$1	1	86	116	14.0913
.....(((((((.........)))))))..	chr11:64536382-64536664(-)$1	1	120	150	13.0548
..(((.((((((.......)))))))))..	chr13:107211692-107212027(-)$1	1	8	38	16.4281
((((((((((((.......)))))).))))	chr19:18530285-18530584(+)$1	1	237	267	16.4217
.(((((((((((.......)))))))))))	chr3:133476654-133476890(+)$1	1	26	56	17.8260
((((....((((.......))))....)))	chr3:120394539-120394800(-)$1	1	188	218	16.5818
)(((((((((((.......)))))))))))	chr3:133476630-133476854(+)$1	1	50	80	18.1307
(.(((....(((.......)))))))))))	chr15:72501908-72502140(-)$1	1	6	36	17.5252
(.(((.((((((.......))))))))).)	chr17:1675077-1675358(+)$1	1	89	119	16.2987
..(((.(.(.((.......)).)).))).)	chr2:62932966-62933255(+)$1	1	17	47	17.4024
..(((.((((((.......)))))))))..	chr13:99029974-99030281(+)$1	1	16	46	14.5906
(...((((.(((.......))).))))..)	chr17:48797010-48797278(+)$1	1	114	144	15.4713
(.(..((((.((.......)).).)))..)	chr22:42229146-42229420(+)$1	1	131	161	16.2970
)))))))(((((.......)))))((((((	chr3:49050512-49050767(+)$1	1	142	172	17.4663
((.(.(..((((.......)))).).).))	chr17:80036636-80036900(-)$1	1	192	222	17.1310
.(((((((.(((.......)))))).))))	chr17:62500006-62500334(-)$1	1	295	325	14.8045
((.((...((((.......)))).))))).	chr19:572529-572799(+)$1	1	230	260	16.6370
..(((..(((((.......)))))..))).	chr9:116824858-116825075(-)$1	1	161	191	18.1889
...((..(((((.......)))))..))..	chr19:580303-580559(+)$1	1	52	82	17.3812
((((.(((((((.......)))))..)).)	chr12:862212-862526(+)$1	1	215	245	15.7406
((.(((.(((((.......))))).)))))	chr2:61575321-61575625(-)$1	1	91	121	17.6154

#PSSM
d : 0.14	g : 0.14	c : 0.14	f : 0.08	! : 0.08	b : 0.06	: : 0.06	% : 0.04	# : 0.04	$ : 0.04	i : 0.04	" : 0.02	h : 0.02	a : 0.02	e : 0.02	
g : 0.14	[ : 0.14	d : 0.12	f : 0.08	= : 0.06	b : 0.06	c : 0.06	! : 0.06	e : 0.04	" : 0.04	# : 0.04	$ : 0.04	i : 0.04	: : 0.02	
c : 0.19	g : 0.14	[ : 0.10	d : 0.08	f : 0.08	= : 0.06	e : 0.06	b : 0.06	" : 0.04	# : 0.04	i : 0.04	: : 0.02	$ : 0.02	a : 0.02	
c : 0.23	g : 0.14	b : 0.08	f : 0.08	= : 0.06	i : 0.06	e : 0.06	! : 0.06	d : 0.06	" : 0.04	$ : 0.04	[ : 0.02	a : 0.02	
c : 0.23	g : 0.14	b : 0.08	= : 0.06	i : 0.06	e : 0.06	! : 0.06	d : 0.06	h : 0.04	f : 0.04	# : 0.04	$ : 0.04	[ : 0.04	
g : 0.14	! : 0.12	c : 0.10	e : 0.08	[ : 0.08	= : 0.06	i : 0.06	b : 0.06	d : 0.06	# : 0.06	" : 0.04	h : 0.04	$ : 0.02	a : 0.02	
! : 0.17	g : 0.12	[ : 0.10	f : 0.10	= : 0.06	d : 0.06	# : 0.06	c : 0.06	i : 0.04	" : 0.04	e : 0.04	h : 0.04	$ : 0.02	a : 0.02	b : 0.02	
e : 0.19	d : 0.12	f : 0.10	" : 0.08	g : 0.08	= : 0.06	# : 0.06	c : 0.06	! : 0.06	h : 0.04	[ : 0.04	i : 0.02	b : 0.02	$ : 0.02	
d : 0.27	e : 0.19	f : 0.10	g : 0.08	= : 0.06	" : 0.04	h : 0.04	a : 0.04	[ : 0.04	i : 0.02	b : 0.02	c : 0.02	! : 0.02	# : 0.02	
d : 0.25	e : 0.19	[ : 0.10	f : 0.10	g : 0.08	c : 0.08	= : 0.06	" : 0.04	h : 0.04	i : 0.02	
d : 0.25	e : 0.17	b : 0.14	f : 0.10	g : 0.08	c : 0.08	= : 0.06	h : 0.04	i : 0.02	[ : 0.02	
e : 0.17	d : 0.17	b : 0.14	f : 0.10	r : 0.08	g : 0.08	c : 0.08	= : 0.06	h : 0.04	i : 0.02	a : 0.02	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
e : 0.17	d : 0.17	b : 0.14	r : 0.14	f : 0.10	= : 0.06	c : 0.06	h : 0.04	g : 0.04	i : 0.02	a : 0.02	
d : 0.25	e : 0.17	b : 0.14	f : 0.10	= : 0.06	r : 0.06	c : 0.06	h : 0.04	g : 0.04	i : 0.02	] : 0.02	
d : 0.25	e : 0.19	] : 0.10	f : 0.10	g : 0.08	c : 0.08	= : 0.06	3 : 0.04	h : 0.04	i : 0.02	
d : 0.27	e : 0.19	f : 0.10	g : 0.08	c : 0.08	= : 0.06	3 : 0.04	h : 0.04	a : 0.04	i : 0.02	b : 0.02	] : 0.02	
e : 0.19	d : 0.12	3 : 0.10	c : 0.10	f : 0.10	g : 0.08	= : 0.06	] : 0.06	h : 0.04	i : 0.02	b : 0.02	2 : 0.02	4 : 0.02	a : 0.02	
g : 0.19	2 : 0.14	] : 0.10	c : 0.10	f : 0.10	3 : 0.08	= : 0.06	h : 0.04	d : 0.04	i : 0.02	e : 0.02	4 : 0.02	a : 0.02	b : 0.02	
g : 0.19	c : 0.17	2 : 0.14	3 : 0.08	] : 0.08	= : 0.06	b : 0.06	d : 0.06	e : 0.04	h : 0.04	i : 0.02	4 : 0.02	
c : 0.25	g : 0.17	b : 0.10	d : 0.08	= : 0.06	i : 0.04	] : 0.04	e : 0.04	h : 0.04	2 : 0.04	4 : 0.04	3 : 0.02	: : 0.02	a : 0.02	
c : 0.23	g : 0.21	] : 0.08	d : 0.08	= : 0.06	e : 0.06	2 : 0.06	b : 0.06	i : 0.04	f : 0.04	h : 0.02	4 : 0.02	
c : 0.17	g : 0.17	d : 0.12	] : 0.08	2 : 0.08	= : 0.06	e : 0.06	f : 0.06	b : 0.04	4 : 0.04	h : 0.02	i : 0.02	5 : 0.02	3 : 0.02	
g : 0.17	b : 0.10	e : 0.10	d : 0.10	2 : 0.08	c : 0.08	f : 0.08	= : 0.06	] : 0.04	4 : 0.04	h : 0.02	i : 0.02	5 : 0.02	a : 0.02	3 : 0.02	

#score	747.2630579675833
#seq	47
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF233ZXV_DHX30_UTR_m2_run1.txt

#BEAR
gggg!!cccaeeeee[bblllbb]eeeee]a22ccc22gg	chr11:2151084-2151301(-)$1	217	153	193	30.6481
dddd!!cccaeeeee[bblllbb]eeeee]a22ccc22dd	chr11:2150954-2151164(-)$1	210	16	56	28.5807
gggg!!cccaeeeee[bblllbb]eeeee]a22ccc22gg	chr11:2151027-2151253(-)$1	226	105	145	30.6481
FFF==========eeeeellleeeee4444==========	chr11:2150800-2151012(-)$1	212	47	87	24.3986
eea==========eeeeellleeeee4444==========	chr11:2150892-2151098(-)$1	206	133	173	23.6315
KBB==========eeeeellleeeee4444==========	chr11:2150818-2151032(-)$1	214	67	107	22.9086
gggg!!cccaeeeee[bblllbb]eeeee]a22ccc22gg	chr11:2151054-2151262(-)$1	208	114	154	30.6481
gggg!!cccaeeeee[bblllbb]eeeee]a22ccc22gg	chr11:2151067-2151284(-)$1	217	136	176	30.6481
KBB==========eeeeellleeeee4444==========	chr11:2150833-2151047(-)$1	214	82	122	22.9086
FFF==========eeeeellleeeee4444==========	chr11:2150812-2151018(-)$1	206	53	93	24.3986
gggg!!cccaeeeee[bblllbb]eeeee]a22ccc22gg	chr11:2151016-2151227(-)$1	211	79	119	30.6481
gggg!!cccaeeeee[bblllbb]eeeee]a22ccc22gg	chr11:2151012-2151216(-)$1	204	68	108	30.6481

#otherMatches

#Seq PSSM
UGCUUGGGCCCCGGAGCCCACGGGUCUGGUGAUGCCAUAG	chr11:2151084-2151301(-)$1	217	153	193	30.6481
UGCUUGGGCCCCGGAGCCCACGGGUCUGGUGAUGCCAUAG	chr11:2150954-2151164(-)$1	210	16	56	28.5807
UGCUUGGGCCCCGGAGCCCACGGGUCUGGUGAUGCCAUAG	chr11:2151027-2151253(-)$1	226	105	145	30.6481
ACGGGGCUGGCAUGACCCCGGGGGUCGUCCAUGCCAGUCC	chr11:2150800-2151012(-)$1	212	47	87	24.3986
ACGGGGCUGGCAUGACCCCGGGGGUCGUCCAUGCCAGUCC	chr11:2150892-2151098(-)$1	206	133	173	23.6315
ACGGGGCUGGCAUGACCCCGGGGGUCGUCCAUGCCAGUCC	chr11:2150818-2151032(-)$1	214	67	107	22.9086
UGCUUGGGCCCCGGAGCCCACGGGUCUGGUGAUGCCAUAG	chr11:2151054-2151262(-)$1	208	114	154	30.6481
UGCUUGGGCCCCGGAGCCCACGGGUCUGGUGAUGCCAUAG	chr11:2151067-2151284(-)$1	217	136	176	30.6481
ACGGGGCUGGCAUGACCCCGGGGGUCGUCCAUGCCAGUCC	chr11:2150833-2151047(-)$1	214	82	122	22.9086
ACGGGGCUGGCAUGACCCCGGGGGUCGUCCAUGCCAGUCC	chr11:2150812-2151018(-)$1	206	53	93	24.3986
UGCUUGGGCCCCGGAGCCCACGGGUCUGGUGAUGCCAUAG	chr11:2151016-2151227(-)$1	211	79	119	30.6481
UGCUUGGGCCCCGGAGCCCACGGGUCUGGUGAUGCCAUAG	chr11:2151012-2151216(-)$1	204	68	108	30.6481

#DB
((((..(((((((((.((...)).))))).)..)))..))	chr11:2151084-2151301(-)$1	1	153	193	30.6481
((((..(((((((((.((...)).))))).)..)))..))	chr11:2150954-2151164(-)$1	1	16	56	28.5807
((((..(((((((((.((...)).))))).)..)))..))	chr11:2151027-2151253(-)$1	1	105	145	30.6481
((((((((((((((((((...)))))....))))))))))	chr11:2150800-2151012(-)$1	1	47	87	24.3986
((((((((((((((((((...)))))....))))))))))	chr11:2150892-2151098(-)$1	1	133	173	23.6315
.(((((((((((((((((...)))))....))))))))))	chr11:2150818-2151032(-)$1	1	67	107	22.9086
((((..(((((((((.((...)).))))).)..)))..))	chr11:2151054-2151262(-)$1	1	114	154	30.6481
((((..(((((((((.((...)).))))).)..)))..))	chr11:2151067-2151284(-)$1	1	136	176	30.6481
.(((((((((((((((((...)))))....))))))))))	chr11:2150833-2151047(-)$1	1	82	122	22.9086
((((((((((((((((((...)))))....))))))))))	chr11:2150812-2151018(-)$1	1	53	93	24.3986
((((..(((((((((.((...)).))))).)..)))..))	chr11:2151016-2151227(-)$1	1	79	119	30.6481
((((..(((((((((.((...)).))))).)..)))..))	chr11:2151012-2151216(-)$1	1	68	108	30.6481

#PSSM
g : 0.49	F : 0.16	K : 0.16	d : 0.08	e : 0.08	
g : 0.49	F : 0.16	B : 0.16	d : 0.08	e : 0.08	
g : 0.49	F : 0.16	B : 0.16	d : 0.08	a : 0.08	
g : 0.49	= : 0.41	d : 0.08	
! : 0.58	= : 0.41	
! : 0.58	= : 0.41	
c : 0.58	= : 0.41	
c : 0.58	= : 0.41	
c : 0.58	= : 0.41	
a : 0.58	= : 0.41	
e : 0.58	= : 0.41	
e : 0.58	= : 0.41	
e : 0.58	= : 0.41	
e : 1.00	
e : 1.00	
[ : 0.58	e : 0.41	
b : 0.58	e : 0.41	
b : 0.58	e : 0.41	
l : 1.00	
l : 1.00	
l : 1.00	
b : 0.58	e : 0.41	
b : 0.58	e : 0.41	
] : 0.58	e : 0.41	
e : 1.00	
e : 1.00	
e : 0.58	4 : 0.41	
e : 0.58	4 : 0.41	
e : 0.58	4 : 0.41	
] : 0.58	4 : 0.41	
a : 0.58	= : 0.41	
2 : 0.58	= : 0.41	
2 : 0.58	= : 0.41	
c : 0.58	= : 0.41	
c : 0.58	= : 0.41	
c : 0.58	= : 0.41	
2 : 0.58	= : 0.41	
2 : 0.58	= : 0.41	
g : 0.49	= : 0.41	d : 0.08	
g : 0.49	= : 0.41	d : 0.08	

#score	330.7160292894083
#seq	12
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_transcript_m3_run2.txt

#BEAR
bb"""eeeeennnnneeeee22bbf	chr17:80437608-80437867(+)$1	259	146	171	11.3325
ccccc[ddddnnnnnddddccc]cc	chr22:19840807-19841079(-)$1	272	6	31	12.5561
c$$$$$eeeeellleeeee333ccc	chr16:67205403-67205692(+)$1	289	21	46	8.6442
ddd!!eeeeennnnneeeee333dd	chr16:1905530-1905882(-)$1	352	127	152	13.2170
""bb!!ddddooooooddddbb]cc	chr7:151208406-151208724(-)$1	318	183	208	9.4265
dd==========lll==========	chr5:21483127-21483385(+)$1	258	179	204	8.8276
eeee[ddddoooooodddd]eeeee	chr13:111557585-111557868(-)$1	283	222	247	9.7878
ggggggg[bbnnnnnbbggggggg3	chr3:195776328-195776617(-)$1	289	199	224	9.6529
gggggggddddllldddd4444ggg	chr3:160119249-160119508(+)$1	259	6	31	9.0899
fffff[ddddnnnnndddd]fffff	chr10:103545082-103545357(-)$1	275	126	151	11.7124
d[bb[eeeeennnnneeeee]bbdd	chr8:109260496-109260799(-)$1	303	46	71	11.2401
ffff!!cccaooooooa]ccc]fff	chr2:145273786-145274048(-)$1	262	53	78	8.8263
ggggggg[bbnnnnnbb]ggggggg	chr21:34899123-34899412(-)$1	289	122	147	9.5616
g[a!!eeeeennnnneeeee333a]	chr16:89498186-89498455(-)$1	269	68	93	13.0739
[a[a"""cccnnnnnccc]a]abb]	chr7:140397202-140397513(+)$1	311	79	104	11.2001
d[eeeeeddddmmmmdddd333eee	chr2:55207080-55207372(-)$1	292	113	138	8.6299
dddgggggggnnnnnggggggg22d	chr18:9926379-9926648(+)$1	269	133	158	10.3434
ccc[bbddddnnnnndddd]bb]cc	chr19:55609276-55609582(-)$1	306	114	139	11.4759
c####eeeeeooooooeeeeecccc	chr11:85763985-85764284(-)$1	299	123	148	9.6748
ccc"""ddddnnnnndddd4444cc	chr11:14669474-14669764(+)$1	290	83	108	13.7399
$dddd!!cccnnnnnccc22dddd]	chr1:161088100-161088509(+)$1	409	332	357	10.6561
ddddd!!cccooooooccc22dddd	chr6:151308578-151308872(+)$1	294	196	221	9.4366
ddd[aeeeeennnnneeeee333a]	chr22:19389278-19389529(-)$1	251	178	203	12.8117
dddddeeeeennnnneeeee333dd	chr11:65270584-65270812(+)$1	228	173	198	12.5338
eeee!!ddddnnnnndddd333eee	chr19:15408024-15408308(-)$1	284	209	234	13.6587
""ddddddddnnnnndddd]ddddb	chr11:10828898-10829159(-)$1	261	100	125	11.5479
[dddd[ddddnnnnndddddddd]b	chr7:105180037-105180355(+)$1	318	221	246	11.5480
ffffff[cccnnnnnccc22fffff	chr11:65193113-65193327(+)$1	214	101	126	9.9380
==========nnnnn==========	chr16:70584815-70585150(+)$1	335	205	230	11.6692
dd"""eeeeennnnneeeeedddd:	chr7:119398929-119399236(-)$1	307	97	122	10.9189
dddd[ddddannnnna]dddd]ddd	chr2:198284124-198284403(-)$1	279	35	60	11.7093
:dddd[ddddnnnnndddd333ddd	chr11:75114079-75114321(+)$1	242	208	233	12.5002
b[ccc[cccooooooccc]ccc]bb	chr1:151024195-151024437(-)$1	242	129	154	8.6500
[ccc[ddddoooooodddd333ccc	chr7:119349074-119349393(-)$1	319	121	146	11.4852
eeeee!!cccooooooccc333eee	chr6:26124997-26125299(+)$1	302	242	267	10.0286
ff[gggggggnnnnnggggggg]ff	chr11:2702697-2702949(-)$1	252	152	177	10.4969
dccc[ddddoooooodddd]ccc]d	chr21:46281688-46281952(-)$1	264	8	33	10.4332
dddd[eeeeennnnneeeee]dddd	chr17:30701866-30702120(+)$1	254	59	84	12.1032
dddd"""cccnnnnnccc333dddd	chr17:48828947-48829247(+)$1	300	255	280	12.2889
eeee!!ddddnnnnndddd]eeeee	chr6:43591185-43591459(-)$1	274	150	175	12.4566
fccc[eeeeennnnneeeeecccbb	chr17:56068925-56069176(-)$1	251	38	63	11.5798
ffff[eeeeeooooooeeeeeffff	chr4:68376169-68376443(-)$1	274	137	162	9.0357
dddd[cccddddllldddd333ccc	chr3:48754005-48754258(-)$1	253	16	41	9.9899
e[ccc[cccooooooccc]ccc]ee	chr7:158725537-158725799(+)$1	262	16	41	9.1568
diiiiiiiiinnnnniiiiiiiii:	chr9:128002740-128003021(-)$1	281	228	253	10.1586
ffffffddddnnnnndddd]fffff	chr3:195786146-195786435(-)$1	289	168	193	11.3263
dddd!!ddddoooooodddd22ddd	chr3:176887854-176888198(-)$1	344	238	263	10.8599
ccc!!a!!ddddllldddd4444a2	chr2:96934643-96934931(+)$1	288	141	166	9.4929
dddda[ddddnnnnndddd]a]ddd	chr17:34151283-34151554(+)$1	271	232	257	12.9513
bb"""eeeeennnnneeeee22bb3	chr12:121772370-121772679(-)$1	309	136	161	11.3877
gggggggcccnnnnnccc4444ggg	chr1:16653347-16653627(-)$1	280	246	271	11.9007

#otherMatches

#Seq PSSM
GCUAUGGGACUUUCUGUCCCUUGCC	chr17:80437608-80437867(+)$1	259	146	171	11.3325
CCUUGUGCUCCCAGUGAGCCGGUGG	chr22:19840807-19841079(-)$1	272	6	31	12.5561
ggaggaggcuagaguagccagacca	chr16:67205403-67205692(+)$1	289	21	46	8.6442
GAUCAUCUUGAAAAACAGGAGAAGU	chr16:1905530-1905882(-)$1	352	127	152	13.2170
AAGAUAGUGAUAGAAUUCACUCCGA	chr7:151208406-151208724(-)$1	318	183	208	9.4265
GAGCUGUAGAGGAGACCUCUGCAGC	chr5:21483127-21483385(+)$1	258	179	204	8.8276
GUUGUUACauuuauuuguauuaacu	chr13:111557585-111557868(-)$1	283	222	247	9.7878
AGACUAGUGACAAGCUCCUGGUCUU	chr3:195776328-195776617(-)$1	289	199	224	9.6529
CUCGUGGCAGUGUCGCUGAAGUUCA	chr3:160119249-160119508(+)$1	259	6	31	9.0899
CAUGUGAAAUGUUGGAUUUGACAUG	chr10:103545082-103545357(-)$1	275	126	151	11.7124
ACACGUGCGAGGCGGUCGCGAGUUU	chr8:109260496-109260799(-)$1	303	46	71	11.2401
UGGUAGGUCCGUUUUGGAGACAGCC	chr2:145273786-145274048(-)$1	262	53	78	8.8263
AGCCAUUCAGAAUCACUAAAUGGCU	chr21:34899123-34899412(-)$1	289	122	147	9.5616
UGGAAAUGGACAGGAUUUAUAAGUG	chr16:89498186-89498455(-)$1	269	68	93	13.0739
ACGCAGACCGGAGGGCGGAGGGCUG	chr7:140397202-140397513(+)$1	311	79	104	11.2001
GAGAGAAAUCGAACUUGAUAAGUUC	chr2:55207080-55207372(-)$1	292	113	138	8.6299
uuagacaguggacaucauuguucau	chr18:9926379-9926648(+)$1	269	133	158	10.3434
CCAGGCCUAGGGCUUCUGGUGCGUG	chr19:55609276-55609582(-)$1	306	114	139	11.4759
CCUCAGUCUAGUAGGGUAGAUGACG	chr11:85763985-85764284(-)$1	299	123	148	9.6748
GGAAAGAAGCACUGAGUUUGUAGUC	chr11:14669474-14669764(+)$1	290	83	108	13.7399
UUCUUAUAAAGAGCGUUUUGAAGAC	chr1:161088100-161088509(+)$1	409	332	357	10.6561
gagugucggccccacagccuuugcu	chr6:151308578-151308872(+)$1	294	196	221	9.4366
gcugcacugggaagacuaguaaagg	chr22:19389278-19389529(-)$1	251	178	203	12.8117
CCUGACCCCUUCCCUAGGGGAUUUC	chr11:65270584-65270812(+)$1	228	173	198	12.5338
GUGCAGCCUGGUCAACGGGAGGGCA	chr19:15408024-15408308(-)$1	284	209	234	13.6587
ACAUUUUAGGUUAGUCUUACAGAUC	chr11:10828898-10829159(-)$1	261	100	125	11.5479
UUAAAUAUAGCCUGUCUAUUUUAUU	chr7:105180037-105180355(+)$1	318	221	246	11.5480
UAGAAACACAUCUGUUGUCUUUUCU	chr11:65193113-65193327(+)$1	214	101	126	9.9380
GCUCACUUUACCUUUUGGAGUGAGC	chr16:70584815-70585150(+)$1	335	205	230	11.6692
CUAUAUAAGCCUUAAGUUUGAGAUG	chr7:119398929-119399236(-)$1	307	97	122	10.9189
GCAGUACUGCUAUAUGCCAGUCCUG	chr2:198284124-198284403(-)$1	279	35	60	11.7093
cccagacccaccaaaugggaaacug	chr11:75114079-75114321(+)$1	242	208	233	12.5002
AGAAGCAGUAGAUACACUCCUUAUC	chr1:151024195-151024437(-)$1	242	129	154	8.6500
aagucuucagaaauaugaaaacacu	chr7:119349074-119349393(-)$1	319	121	146	11.4852
GUUGGUAACCUUGUUUGGUCCUCCG	chr6:26124997-26125299(+)$1	302	242	267	10.0286
AAGUUACUCUAGAAAAGGGUAAGUU	chr11:2702697-2702949(-)$1	252	152	177	10.4969
AAGGGGCUCAGACAAGAGCGUCUAU	chr21:46281688-46281952(-)$1	264	8	33	10.4332
CCAACUAAAAUUUGCUUUUAUUUGG	chr17:30701866-30702120(+)$1	254	59	84	12.1032
UAUUAAAAGUUAGGUACUGUAAGUG	chr17:48828947-48829247(+)$1	300	255	280	12.2889
UGUUGGCUUUGGAGGGAAGAAACAG	chr6:43591185-43591459(-)$1	274	150	175	12.4566
ACUUCUGACCACAUGGGUCAAAGGC	chr17:56068925-56069176(-)$1	251	38	63	11.5798
cgggcucuguacuugcacagaccug	chr4:68376169-68376443(-)$1	274	137	162	9.0357
GUCAUUGAGGGGUCUCCCCAGGUCA	chr3:48754005-48754258(-)$1	253	16	41	9.9899
ggaggagccuagguuggccucugcc	chr7:158725537-158725799(+)$1	262	16	41	9.1568
UGCUGUCGUACUGUCUACGAUAGUU	chr9:128002740-128003021(-)$1	281	228	253	10.1586
UGUGAAGCCCAGAGAGGGCUUUUAC	chr3:195786146-195786435(-)$1	289	168	193	11.3263
GUGUAAUCAGAUAACCCUGGCAGCA	chr3:176887854-176888198(-)$1	344	238	263	10.8599
ACAUACAGUCUGCAACAGAACAGGG	chr2:96934643-96934931(+)$1	288	141	166	9.4929
ACGACUCUGGGAAAUCCAGUGUUUG	chr17:34151283-34151554(+)$1	271	232	257	12.9513
acauaggcuuacugaaagucagguu	chr12:121772370-121772679(-)$1	309	136	161	11.3877
GUUUAAGGGCCUUUAGCCAUUACUU	chr1:16653347-16653627(-)$1	280	246	271	11.9007

#DB
((...(((((.....)))))..)))	chr17:80437608-80437867(+)$1	1	146	171	11.3325
(((((.((((.....))))))).))	chr22:19840807-19841079(-)$1	1	6	31	12.5561
(.....(((((...)))))...)))	chr16:67205403-67205692(+)$1	1	21	46	8.6442
(((..(((((.....)))))...))	chr16:1905530-1905882(-)$1	1	127	152	13.2170
..((..((((......)))))).))	chr7:151208406-151208724(-)$1	1	183	208	9.4265
))((((((((((...))))))))))	chr5:21483127-21483385(+)$1	1	179	204	8.8276
((((.((((......)))).)))))	chr13:111557585-111557868(-)$1	1	222	247	9.7878
(((((((.((.....))))))))).	chr3:195776328-195776617(-)$1	1	199	224	9.6529
(((((((((((...))))....)))	chr3:160119249-160119508(+)$1	1	6	31	9.0899
(((((.((((.....)))).)))))	chr10:103545082-103545357(-)$1	1	126	151	11.7124
(.((.(((((.....))))).))))	chr8:109260496-109260799(-)$1	1	46	71	11.2401
((((..((((......).))).)))	chr2:145273786-145274048(-)$1	1	53	78	8.8263
(((((((.((.....)).)))))))	chr21:34899123-34899412(-)$1	1	122	147	9.5616
(.(..(((((.....)))))...).	chr16:89498186-89498455(-)$1	1	68	93	13.0739
.(.(...(((.....))).).))).	chr7:140397202-140397513(+)$1	1	79	104	11.2001
(.(((((((((....))))...)))	chr2:55207080-55207372(-)$1	1	113	138	8.6299
((((((((((.....)))))))..)	chr18:9926379-9926648(+)$1	1	133	158	10.3434
(((.((((((.....)))).)).))	chr19:55609276-55609582(-)$1	1	114	139	11.4759
(....(((((......))))))))(	chr11:85763985-85764284(-)$1	1	123	148	9.6748
(((...((((.....))))....))	chr11:14669474-14669764(+)$1	1	83	108	13.7399
.((((..(((.....)))..)))).	chr1:161088100-161088509(+)$1	1	332	357	10.6561
)((((..(((......)))..))))	chr6:151308578-151308872(+)$1	1	196	221	9.4366
(((.((((((.....)))))...).	chr22:19389278-19389529(-)$1	1	178	203	12.8117
)(((((((((.....)))))...))	chr11:65270584-65270812(+)$1	1	173	198	12.5338
((((..((((.....))))...)))	chr19:15408024-15408308(-)$1	1	209	234	13.6587
..((((((((.....)))).)))))	chr11:10828898-10829159(-)$1	1	100	125	11.5479
.((((.((((.....)))))))).)	chr7:105180037-105180355(+)$1	1	221	246	11.5480
((((((.(((.....)))..)))))	chr11:65193113-65193327(+)$1	1	101	126	9.9380
((((((((((.....))))))))))	chr16:70584815-70585150(+)$1	1	205	230	11.6692
((...(((((.....))))))))).	chr7:119398929-119399236(-)$1	1	97	122	10.9189
((((.(((((.....).)))).)))	chr2:198284124-198284403(-)$1	1	35	60	11.7093
.((((.((((.....))))...)))	chr11:75114079-75114321(+)$1	1	208	233	12.5002
(.(((.(((......))).))).))	chr1:151024195-151024437(-)$1	1	129	154	8.6500
.(((.((((......))))...)))	chr7:119349074-119349393(-)$1	1	121	146	11.4852
(((((..(((......)))...)))	chr6:26124997-26125299(+)$1	1	242	267	10.0286
((.(((((((.....))))))).))	chr11:2702697-2702949(-)$1	1	152	177	10.4969
((((.((((......)))).))).)	chr21:46281688-46281952(-)$1	1	8	33	10.4332
((((.(((((.....))))).))))	chr17:30701866-30702120(+)$1	1	59	84	12.1032
((((...(((.....)))...))))	chr17:48828947-48829247(+)$1	1	255	280	12.2889
((((..((((.....)))).)))))	chr6:43591185-43591459(-)$1	1	150	175	12.4566
)(((.(((((.....))))))))((	chr17:56068925-56069176(-)$1	1	38	63	11.5798
((((.(((((......)))))))))	chr4:68376169-68376443(-)$1	1	137	162	9.0357
((((.(((((((...))))...)))	chr3:48754005-48754258(-)$1	1	16	41	9.9899
(.(((.(((......))).))).))	chr7:158725537-158725799(+)$1	1	16	41	9.1568
)(((((((((.....))))))))).	chr9:128002740-128003021(-)$1	1	228	253	10.1586
((((((((((.....)))).)))))	chr3:195786146-195786435(-)$1	1	168	193	11.3263
((((..((((......))))..)))	chr3:176887854-176888198(-)$1	1	238	263	10.8599
(((..(..((((...))))....).	chr2:96934643-96934931(+)$1	1	141	166	9.4929
(((((.((((.....)))).).)))	chr17:34151283-34151554(+)$1	1	232	257	12.9513
((...(((((.....)))))..)).	chr12:121772370-121772679(-)$1	1	136	161	11.3877
((((((((((.....)))....)))	chr1:16653347-16653627(-)$1	1	246	271	11.9007

#PSSM
d : 0.33	f : 0.13	c : 0.11	e : 0.09	g : 0.09	b : 0.05	[ : 0.05	" : 0.03	$ : 0.01	= : 0.01	: : 0.01	
d : 0.31	c : 0.13	f : 0.11	[ : 0.09	e : 0.07	g : 0.07	b : 0.03	" : 0.03	$ : 0.01	a : 0.01	# : 0.01	= : 0.01	i : 0.01	
d : 0.29	c : 0.17	e : 0.09	f : 0.09	g : 0.07	" : 0.05	b : 0.03	= : 0.03	[ : 0.03	$ : 0.01	a : 0.01	# : 0.01	i : 0.01	
d : 0.23	c : 0.11	g : 0.11	e : 0.09	f : 0.09	" : 0.07	! : 0.05	b : 0.03	= : 0.03	[ : 0.03	$ : 0.01	a : 0.01	# : 0.01	i : 0.01	
[ : 0.17	! : 0.15	" : 0.11	g : 0.11	d : 0.11	c : 0.05	f : 0.05	= : 0.03	e : 0.03	a : 0.03	$ : 0.01	b : 0.01	# : 0.01	i : 0.01	
e : 0.25	! : 0.15	[ : 0.13	g : 0.11	d : 0.09	" : 0.05	= : 0.03	f : 0.03	$ : 0.01	b : 0.01	c : 0.01	i : 0.01	a : 0.01	
d : 0.33	e : 0.27	g : 0.11	c : 0.07	! : 0.07	= : 0.03	" : 0.03	[ : 0.01	i : 0.01	
d : 0.37	e : 0.25	c : 0.21	= : 0.03	[ : 0.03	g : 0.03	i : 0.01	! : 0.01	
d : 0.41	e : 0.25	c : 0.19	= : 0.03	b : 0.03	g : 0.03	i : 0.01	
d : 0.33	e : 0.25	c : 0.13	o : 0.09	= : 0.03	b : 0.03	a : 0.03	g : 0.03	i : 0.01	
n : 0.64	o : 0.23	d : 0.07	e : 0.01	= : 0.01	
n : 0.64	o : 0.23	l : 0.03	d : 0.03	= : 0.01	m : 0.01	
n : 0.64	o : 0.23	l : 0.09	m : 0.01	
n : 0.64	o : 0.23	l : 0.09	m : 0.01	
n : 0.64	o : 0.23	l : 0.05	e : 0.01	d : 0.01	m : 0.01	
d : 0.35	e : 0.21	o : 0.13	c : 0.13	= : 0.03	b : 0.03	g : 0.03	a : 0.01	i : 0.01	
d : 0.39	e : 0.25	c : 0.17	= : 0.03	b : 0.03	g : 0.03	a : 0.01	] : 0.01	i : 0.01	
d : 0.41	e : 0.25	c : 0.17	g : 0.05	= : 0.03	] : 0.03	i : 0.01	
d : 0.39	e : 0.25	g : 0.07	c : 0.05	] : 0.05	= : 0.03	4 : 0.03	2 : 0.03	3 : 0.01	i : 0.01	
e : 0.23	3 : 0.15	] : 0.15	c : 0.07	d : 0.07	g : 0.07	4 : 0.07	2 : 0.05	= : 0.03	a : 0.01	i : 0.01	
3 : 0.23	c : 0.11	d : 0.09	2 : 0.07	e : 0.07	g : 0.07	4 : 0.07	f : 0.05	] : 0.05	b : 0.03	= : 0.03	i : 0.01	a : 0.01	
3 : 0.21	d : 0.13	c : 0.11	g : 0.07	4 : 0.07	f : 0.07	2 : 0.05	b : 0.05	] : 0.05	= : 0.03	e : 0.03	a : 0.01	i : 0.01	
d : 0.21	] : 0.11	c : 0.11	e : 0.09	f : 0.09	b : 0.07	3 : 0.07	g : 0.07	= : 0.03	4 : 0.03	2 : 0.01	i : 0.01	
d : 0.25	c : 0.15	e : 0.11	f : 0.11	b : 0.09	g : 0.07	a : 0.05	= : 0.03	] : 0.03	2 : 0.01	i : 0.01	
d : 0.23	c : 0.15	f : 0.13	e : 0.11	] : 0.07	b : 0.07	g : 0.05	= : 0.03	3 : 0.03	: : 0.03	2 : 0.01	

#score	556.7258719923141
#seq	51
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_transcript_m2_run1.txt

#BEAR
i!!===========ppppppp===========]iiii	chr17:2593086-2593428(-)$1	342	184	221	15.3175
++iiiiiiiii[cccammmma]ccciiiiiiiiiddd	chr7:100849178-100849536(-)$1	358	303	340	14.5436
>>>a]gggggggcccoooooocccccc!!cccrrrrr	chr6:52367578-52367884(-)$1	306	108	145	12.2220
ccc!!iiiiiiiii[ccclllccc]iiiiiiiiiccc	chr22:29951691-29951925(-)$1	234	47	84	16.1527
c####gggggggcccooooooccc333ggggggg555	chr17:41845933-41846218(-)$1	285	100	137	15.8099
c[iiiiiiiii[cccooooooccc]iiiiiiiii]cc	chr2:219270101-219270359(+)$1	258	51	88	19.5344
d!!ggggggg####cccmmmmcccggggggg]ddddb	chr2:73453122-73453400(+)$1	278	152	189	12.6378
========="""cccooooooccc55555========	chr10:102122061-102122283(+)$1	222	145	182	15.1284
:iiiiiiiii[cccrrrrrrrrrccc22iiiiiiiii	chr2:71215350-71215656(-)$1	306	1	38	14.0903
bccc[a[ggggggg[ammmmaggggggg]accc22bb	chr9:130267991-130268232(-)$1	241	7	44	12.3998
========$$$$$cccnnnnnccc==========ddd	chr2:219139073-219139285(-)$1	212	118	155	15.7168
::=============lll=============ffffff	chr9:136228887-136229109(-)$1	222	10	47	14.8182
iiiiiiiii[dddd[ccclllccc]dddd]iiiiiii	chr9:136229552-136229772(-)$1	220	123	160	13.4907
####ffffff[ddddooooooddddffffffccc333	chr15:75136606-75136904(-)$1	298	111	148	13.2607
a[==========[ccclllccc22==========acc	chr7:29962980-29963261(-)$1	281	186	223	17.2588
=============[aooooooa]==============	chr8:40011497-40011812(+)$1	315	274	311	20.1113
!eeeee####bbcccooooooccc]bb4444eeeee]	chr17:79890372-79890654(-)$1	282	34	71	13.0745
c[bb[ffffff[cccooooooccc]ffffff]bb]cc	chr9:132899812-132900081(+)$1	269	144	181	14.1378
!!a[iiiiiiiii[bboooooobb]iiiiiiiii]a]	chr17:2593228-2593486(-)$1	258	139	176	17.3516
::=============oooooo=============:::	chr20:377661-377984(+)$1	323	11	48	15.8559
&&&&&gggggggcccooooooccc333ggggggg333	chr20:61599319-61599580(+)$1	261	143	180	15.2002
h####==========lll==========333hhhhhh	chr1:235273772-235274020(-)$1	248	191	228	15.4150
&&==========rrrrrrrrr==========ccceee	chr19:47260783-47261039(+)$1	256	176	213	15.4387
b[==========rrrrrrrrr==========]bb333	chr5:177036958-177037242(+)$1	284	212	249	16.8361
(a[iiiiiiiiirrrrrrrrriiiiiiiii]a22eee	chr17:38078093-38078333(-)$1	240	156	193	14.1243
fbb!!ccc!!eeeeeooooooeeeee333ccc333bb	chr7:6501879-6502156(-)$1	277	169	206	13.4081
eeebb[ggggggg[ccclllccc333ggggggg22bb	chr1:9163251-9163491(-)$1	240	31	68	13.1862
[bb####==========lll==========22bb]ff	chr12:7085313-7085598(-)$1	285	137	174	15.5329
========="""ddddmmmmdddd333==========	chr17:48187814-48188135(+)$1	321	175	212	15.8686
!!a[ggggggg[ddddmmmmdddd22ggggggg]a22	chr9:136897964-136898232(-)$1	268	175	212	12.6339
[ccc[ccc!!bb[bboooooobb]bb]ccc]ccc]ee	chr1:55317325-55317549(-)$1	224	114	151	12.8989
cccdddd"""eeeeeooooooeeeee333dddd]ccc	chr22:36662301-36662544(+)$1	243	79	116	11.8148
:iiiiiiiiiddddoooooodddd]iiiiiiiii::c	chr17:76203158-76203407(+)$1	249	47	84	13.6085
ffffffiiiiiiiiinnnnniiiiiiiii22ffffff	chr9:137023880-137024190(+)$1	310	264	301	12.3951
ccc[a[ccc!!ddddoooooodddd22ccc]a]cccc	chr10:102121309-102121525(+)$1	216	45	82	13.7071
=======[ccc[arrrrrrrrraccc===========	chr17:7215348-7215592(+)$1	244	18	55	15.9615
a[cccffffff!!bboooooobb22ffffff4444cc	chr17:74078585-74078869(-)$1	284	36	73	12.5593
dddd####ccc[cccooooooccc]ccc]dddd4444	chr17:6588543-6588779(-)$1	236	121	158	14.3624
=====!!ccc[ccccccmmmmccc]ccc333ccc22=	chr3:186796082-186796299(+)$1	217	73	110	13.9487
e####===========nnnnn===========eeeee	chr19:1924691-1924983(+)$1	292	95	132	16.7003
!!===========[bbmmmmbb]===========22b	chr17:80196158-80196427(+)$1	269	104	141	16.1014
bb[=============nnnnn=============]bb	chr15:69747683-69747939(+)$1	256	65	102	17.5334
===============ppppppp===============	chr17:46024291-46024574(+)$1	283	165	202	15.5411
a[==========[ccclllccc22==========]a:	chr8:144103098-144103347(+)$1	249	201	238	16.6289
c"""ggggggg!!cccnnnnnccc22ggggggg]ccc	chr14:77941178-77941427(-)$1	249	200	237	15.2272
==========ccc[aooooooa]ccc]==========	chr16:1748974-1749256(+)$1	282	83	120	18.8581
cffffff####ccc[ccclllccc]cccffffff]cc	chr6:42979762-42980031(+)$1	269	124	161	11.7844
gggg!!ggggggg[cccmmmmccc]gggggggggggg	chr16:23478356-23478636(-)$1	280	199	236	13.9842
[bb$$$$$bb!!cccooooooccc22bbbbggggggg	chr19:19467010-19467263(+)$1	253	139	176	13.2756

#otherMatches

#Seq PSSM
UUGGCUUGCUGGGCCCUCAGAGCCCAGUGGGUGGCUC	chr17:2593086-2593428(-)$1	342	184	221	15.3175
CAUCUCCCCUCCUGCCAGCAGCGUAGAGGGGAGAGAC	chr7:100849178-100849536(-)$1	358	303	340	14.5436
UUUCUCCCCCUCAGGCCACCUCCUGUCCUCACUCCUG	chr6:52367578-52367884(-)$1	306	108	145	12.2220
CCGACAGACAGUGGCACUCCUGGUCCUGCUGUCUUGG	chr22:29951691-29951925(-)$1	234	47	84	16.1527
GGAGAAUUACAAGGGUUUUGUCCUGAAUUGUAGUGUU	chr17:41845933-41846218(-)$1	285	100	137	15.8099
cagcauaugcuaggcCCACCAGCUAAGUGUGUGUGGG	chr2:219270101-219270359(+)$1	258	51	88	19.5344
GUUGGCUCAGACUCUGCACUGGCACUGAGCCUUUCAC	chr2:73453122-73453400(+)$1	278	152	189	12.6378
UUAGGAAUCUCUUCACUACCCUGAUUCUUGAUUCCUG	chr10:102122061-102122283(+)$1	222	145	182	15.1284
AGAAGUCGGGAAGGCACCUACCACCUGCCCUGGCUUU	chr2:71215350-71215656(-)$1	306	1	38	14.0903
CCCGAGGUCCUCAGUGGUUGCCUGGGGAGCCGGACGG	chr9:130267991-130268232(-)$1	241	7	44	12.3998
CUUAAGUUGCACUGGGGGAUUUCUGACUUGAGGCCCA	chr2:219139073-219139285(-)$1	212	118	155	15.7168
UCUGGGGACAGGCUGGCUCAGCCUGUCUCCAGGGCUG	chr9:136228887-136229109(-)$1	222	10	47	14.8182
GCUGCUGGUCUGGGUGCUGCUGGCCUCCAAGCUGGCA	chr9:136229552-136229772(-)$1	220	123	160	13.4907
CUUUAUCCCCCUGCACCCUCCUGCAGGGGAUGGCACU	chr15:75136606-75136904(-)$1	298	111	148	13.2607
GCAUGCCUGUAGUGCACAGUGUCUCUACAGGUGUCUU	chr7:29962980-29963261(-)$1	281	186	223	17.2588
UUUUUUUUUUUUAACCAAAUAGAUAGGGGAAGGGAGG	chr8:40011497-40011812(+)$1	315	274	311	20.1113
CCCAAGUCCAGCGUGAAGGGCCACAGCCCCUCUUGGC	chr17:79890372-79890654(-)$1	282	34	71	13.0745
ACCGUUCAUCUCUGCUCUUGCGUAAAGAUGACCGAUG	chr9:132899812-132900081(+)$1	269	144	181	14.1378
GGCGGGGCUGGAGGGCUGGGGUGCACUUUAGUUUGGG	chr17:2593228-2593486(-)$1	258	139	176	17.3516
UUGUACCAGUGUCGGCCUCCACUGAUGCUGGUGCUCA	chr20:377661-377984(+)$1	323	11	48	15.8559
CCCUCGAGACACGACCUCAGAGUCUCUGUGUCUCCUA	chr20:61599319-61599580(+)$1	261	143	180	15.2002
ACAGUGCUUUUUUGUUACACAGGAGGGCUUUUUUGGG	chr1:235273772-235274020(-)$1	248	191	228	15.4150
UUCAAGACUGAAUAGAAGUAUUUCAGUCUUGCAGAGG	chr19:47260783-47261039(+)$1	256	176	213	15.4387
ggaacagccagcaccgcucuagcugguuguugccaug	chr5:177036958-177037242(+)$1	284	212	249	16.8361
UGGCUUGGUUCCAGAGGUGAGGGGGCCAGGGCUGCUG	chr17:38078093-38078333(-)$1	240	156	193	14.1243
CAUGAUCAUUUGGAUAUAGCAAUCUACUCUGAGAAAU	chr7:6501879-6502156(-)$1	277	169	206	13.4081
accugaggucaggaguucaagaccagccuggccaaca	chr1:9163251-9163491(-)$1	240	31	68	13.1862
GCUACCACCACCCCCCCCAUGGGGGGGUGGAGAGGGG	chr12:7085313-7085598(-)$1	285	137	174	15.5329
CCCUCCGCUCAGGGCUUGAAGGUCGGUGGCGGAGGGG	chr17:48187814-48188135(+)$1	321	175	212	15.8686
GGCUGUGUAUGCAGCCUGCAGGUUUCCAUACACUGAA	chr9:136897964-136898232(-)$1	268	175	212	12.6339
AAGGGGAUACGCUGGAGUUGCCCUGCCAUCGCCUCCA	chr1:55317325-55317549(-)$1	224	114	151	12.8989
caccuuggccucccaaagugcugggauuacaggcgug	chr22:36662301-36662544(+)$1	243	79	116	11.8148
CUUCCCAGCCUGGAUGGAGCUCCAGGGCUGGGGAACG	chr17:76203158-76203407(+)$1	249	47	84	13.6085
AGUGCUGCCCCUCGGACUCCUCGAGGGGUUGGGUGCU	chr9:137023880-137024190(+)$1	310	264	301	12.3951
GCUUCCUUUCUCUCCUGGCUCGGGGUAAAAAGUGGCU	chr10:102121309-102121525(+)$1	216	45	82	13.7071
UCUCCCCUCACACUACAGCCCUGGUGGGGGAGAAGGG	chr17:7215348-7215592(+)$1	244	18	55	15.9615
GAGCUCAGGGUGGCUUAAUCCAGAGGCCCUGUCAUGG	chr17:74078585-74078869(-)$1	284	36	73	12.5593
CCCAAAUAGCUAGGAUCACACUCCAAGUAUGGGCAGU	chr17:6588543-6588779(-)$1	236	121	158	14.3624
UCUGUCUUCUUUGAUAGCCAUCUAUUCAUCUGGAUCA	chr3:186796082-186796299(+)$1	217	73	110	13.9487
UGAUAGAGGGCUUGGUGCCUAGCUGAGUCCUCGCUGU	chr19:1924691-1924983(+)$1	292	95	132	16.7003
GGCUUCUGGGGCUGCCGACUGGAAGCCUCAGGGGGAC	chr17:80196158-80196427(+)$1	269	104	141	16.1014
UUGACUUUUUUUUUCUAGCUGAGGAGAAGAAAGUGGA	chr15:69747683-69747939(+)$1	256	65	102	17.5334
GGUGACAGACAGGGCCCCAGCAGCCCUGUCUGUUACC	chr17:46024291-46024574(+)$1	283	165	202	15.5411
GUGCCUGAUCUGUGCCCUUGGUCCCAGGUCAGGCCCA	chr8:144103098-144103347(+)$1	249	201	238	16.6289
CUCUGUUCUGCUGAUUGUAGGGAUGUGCAGGGCUGGG	chr14:77941178-77941427(-)$1	249	200	237	15.2272
UUUUCAUUUCCUUUUGCCCAAAUGAGCGGGGUGGGAA	chr16:1748974-1749256(+)$1	282	83	120	18.8581
UGUCCCUUAUAGGUACCUUGGAGGGGCCAGGGGCUGA	chr6:42979762-42980031(+)$1	269	124	161	11.7844
UGGGGCAGAGAGUAUCUACUUGGGCACUCUCUUCCAA	chr16:23478356-23478636(-)$1	280	199	236	13.9842
CAGCAGCUGGGGCCUCUGGUCAGGAACCCUCAGGGAC	chr19:19467010-19467263(+)$1	253	139	176	13.2756

#DB
(..(((((((((((.......))))))))))).))))	chr17:2593086-2593428(-)$1	1	184	221	15.3175
..(((((((((.((((....).)))))))))))))))	chr7:100849178-100849536(-)$1	1	303	340	14.5436
...).)))))))(((......)))(((..(((.....	chr6:52367578-52367884(-)$1	1	108	145	12.2220
(((..(((((((((.(((...))).))))))))))))	chr22:29951691-29951925(-)$1	1	47	84	16.1527
(....((((((((((......)))...)))))))...	chr17:41845933-41846218(-)$1	1	100	137	15.8099
(.(((((((((.(((......))).))))))))).))	chr2:219270101-219270359(+)$1	1	51	88	19.5344
(..(((((((....(((....)))))))))).)))))	chr2:73453122-73453400(+)$1	1	152	189	12.6378
(((((((((...(((......))).....))))))))	chr10:102122061-102122283(+)$1	1	145	182	15.1284
.(((((((((.(((.........)))..)))))))))	chr2:71215350-71215656(-)$1	1	1	38	14.0903
((((.(.(((((((.(....)))))))).))))..))	chr9:130267991-130268232(-)$1	1	7	44	12.3998
((((((((.....(((.....)))))))))))))(((	chr2:219139073-219139285(-)$1	1	118	155	15.7168
..(((((((((((((...)))))))))))))((((((	chr9:136228887-136229109(-)$1	1	10	47	14.8182
(((((((((.((((.(((...))).)))).)))))))	chr9:136229552-136229772(-)$1	1	123	160	13.4907
....((((((.((((......)))))))))))))...	chr15:75136606-75136904(-)$1	1	111	148	13.2607
(.((((((((((.(((...)))..)))))))))))))	chr7:29962980-29963261(-)$1	1	186	223	17.2588
(((((((((((((.(......).))))))))))))))	chr8:40011497-40011812(+)$1	1	274	311	20.1113
.(((((....(((((......))).))....))))).	chr17:79890372-79890654(-)$1	1	34	71	13.0745
(.((.((((((.(((......))).)))))).)).))	chr9:132899812-132900081(+)$1	1	144	181	14.1378
..(.(((((((((.((......)).))))))))).).	chr17:2593228-2593486(-)$1	1	139	176	17.3516
..(((((((((((((......)))))))))))))...	chr20:377661-377984(+)$1	1	11	48	15.8559
.....((((((((((......)))...)))))))...	chr20:61599319-61599580(+)$1	1	143	180	15.2002
(....((((((((((...))))))))))...))))))	chr1:235273772-235274020(-)$1	1	191	228	15.4150
..((((((((((.........))))))))))))))))	chr19:47260783-47261039(+)$1	1	176	213	15.4387
(.((((((((((.........)))))))))).))...	chr5:177036958-177037242(+)$1	1	212	249	16.8361
.(.(((((((((.........))))))))).)..)))	chr17:38078093-38078333(-)$1	1	156	193	14.1243
(((..(((..(((((......)))))...)))...))	chr7:6501879-6502156(-)$1	1	169	206	13.4081
(((((.(((((((.(((...)))...)))))))..))	chr1:9163251-9163491(-)$1	1	31	68	13.1862
.((....((((((((((...))))))))))..)).))	chr12:7085313-7085598(-)$1	1	137	174	15.5329
(((((((((...((((....))))...))))))))))	chr17:48187814-48188135(+)$1	1	175	212	15.8686
..(.(((((((.((((....))))..))))))).)..	chr9:136897964-136898232(-)$1	1	175	212	12.6339
.(((.(((..((.((......)).)).))).))).))	chr1:55317325-55317549(-)$1	1	114	151	12.8989
(((((((...(((((......)))))...)))).)))	chr22:36662301-36662544(+)$1	1	79	116	11.8148
.(((((((((((((......)))).)))))))))..(	chr17:76203158-76203407(+)$1	1	47	84	13.6085
(((((((((((((((.....)))))))))..))))))	chr9:137023880-137024190(+)$1	1	264	301	12.3951
(((.(.(((..((((......))))..))).).))))	chr10:102121309-102121525(+)$1	1	45	82	13.7071
(((((((.(((.(.........)))))))))))))))	chr17:7215348-7215592(+)$1	1	18	55	15.9615
(.(((((((((..((......))..))))))....))	chr17:74078585-74078869(-)$1	1	36	73	12.5593
((((....(((.(((......))).))).))))....	chr17:6588543-6588779(-)$1	1	121	158	14.3624
(((((..(((.((((((....))).)))...)))..)	chr3:186796082-186796299(+)$1	1	73	110	13.9487
(....(((((((((((.....))))))))))))))))	chr19:1924691-1924983(+)$1	1	95	132	16.7003
..(((((((((((.((....)).)))))))))))..)	chr17:80196158-80196427(+)$1	1	104	141	16.1014
((.(((((((((((((.....))))))))))))).))	chr15:69747683-69747939(+)$1	1	65	102	17.5334
(((((((((((((((.......)))))))))))))))	chr17:46024291-46024574(+)$1	1	165	202	15.5411
(.((((((((((.(((...)))..)))))))))).).	chr8:144103098-144103347(+)$1	1	201	238	16.6289
(...(((((((..(((.....)))..))))))).)))	chr14:77941178-77941427(-)$1	1	200	237	15.2272
(((((((((((((.(......).))).))))))))))	chr16:1748974-1749256(+)$1	1	83	120	18.8581
(((((((....(((.(((...))).))))))))).))	chr6:42979762-42980031(+)$1	1	124	161	11.7844
((((..(((((((.(((....))).))))))))))))	chr16:23478356-23478636(-)$1	1	199	236	13.9842
.((.....((..(((......)))..)))))))))))	chr19:19467010-19467263(+)$1	1	139	176	13.2756

#PSSM
c : 0.16	= : 0.16	: : 0.08	! : 0.08	b : 0.06	a : 0.06	[ : 0.06	i : 0.04	d : 0.04	& : 0.04	f : 0.04	e : 0.04	+ : 0.02	> : 0.02	# : 0.02	h : 0.02	( : 0.02	g : 0.02	
= : 0.16	[ : 0.12	! : 0.10	c : 0.10	# : 0.08	b : 0.08	i : 0.06	: : 0.04	e : 0.04	& : 0.04	f : 0.04	+ : 0.02	> : 0.02	a : 0.02	d : 0.02	" : 0.02	g : 0.02	
= : 0.30	c : 0.12	i : 0.10	# : 0.08	b : 0.08	! : 0.04	e : 0.04	a : 0.04	[ : 0.04	f : 0.04	> : 0.02	& : 0.02	d : 0.02	" : 0.02	g : 0.02	
= : 0.34	i : 0.12	# : 0.10	c : 0.06	[ : 0.06	! : 0.04	g : 0.04	b : 0.04	d : 0.04	f : 0.04	a : 0.02	e : 0.02	& : 0.02	" : 0.02	$ : 0.02	
= : 0.34	i : 0.14	# : 0.10	! : 0.06	g : 0.06	[ : 0.06	f : 0.06	] : 0.02	e : 0.02	& : 0.02	b : 0.02	d : 0.02	a : 0.02	c : 0.02	$ : 0.02	
= : 0.36	i : 0.16	g : 0.12	f : 0.10	c : 0.04	[ : 0.04	# : 0.04	! : 0.04	a : 0.02	e : 0.02	d : 0.02	$ : 0.02	
= : 0.36	i : 0.18	g : 0.16	f : 0.08	# : 0.06	c : 0.06	[ : 0.02	d : 0.02	! : 0.02	$ : 0.02	
= : 0.36	i : 0.18	g : 0.18	c : 0.08	f : 0.06	# : 0.06	" : 0.02	[ : 0.02	$ : 0.02	
= : 0.34	i : 0.18	g : 0.18	c : 0.08	f : 0.06	# : 0.04	! : 0.04	$ : 0.02	" : 0.02	b : 0.02	
= : 0.30	g : 0.18	i : 0.16	" : 0.06	f : 0.06	! : 0.06	c : 0.06	# : 0.04	$ : 0.02	[ : 0.02	b : 0.02	
= : 0.28	g : 0.16	i : 0.12	[ : 0.06	c : 0.06	# : 0.04	" : 0.04	d : 0.04	b : 0.04	f : 0.04	e : 0.04	! : 0.04	$ : 0.02	
= : 0.28	[ : 0.12	g : 0.12	i : 0.08	c : 0.08	d : 0.08	! : 0.06	" : 0.04	b : 0.04	e : 0.04	# : 0.02	$ : 0.02	
c : 0.28	= : 0.20	d : 0.12	i : 0.06	g : 0.06	[ : 0.06	r : 0.06	e : 0.04	! : 0.04	# : 0.02	$ : 0.02	a : 0.02	
c : 0.34	= : 0.16	d : 0.12	[ : 0.12	r : 0.08	i : 0.04	e : 0.04	b : 0.04	# : 0.02	g : 0.02	
c : 0.36	= : 0.14	r : 0.10	[ : 0.08	d : 0.08	b : 0.08	a : 0.04	e : 0.04	p : 0.02	o : 0.02	i : 0.02	
o : 0.38	c : 0.22	r : 0.10	= : 0.06	p : 0.04	a : 0.04	l : 0.04	b : 0.04	d : 0.04	n : 0.02	
o : 0.40	c : 0.14	m : 0.10	r : 0.10	n : 0.10	l : 0.08	p : 0.04	= : 0.02	
o : 0.40	m : 0.16	l : 0.12	r : 0.10	n : 0.10	c : 0.06	p : 0.04	
o : 0.40	m : 0.16	l : 0.14	r : 0.10	n : 0.10	p : 0.04	= : 0.04	
o : 0.40	m : 0.16	l : 0.10	r : 0.10	n : 0.10	p : 0.04	= : 0.04	c : 0.04	
o : 0.38	r : 0.10	n : 0.08	l : 0.06	m : 0.06	= : 0.06	c : 0.06	d : 0.06	p : 0.04	a : 0.04	i : 0.02	b : 0.02	
c : 0.40	= : 0.18	d : 0.10	b : 0.06	r : 0.04	a : 0.04	i : 0.04	e : 0.04	] : 0.02	g : 0.02	o : 0.02	p : 0.02	
c : 0.38	= : 0.20	d : 0.10	] : 0.06	b : 0.06	2 : 0.04	i : 0.04	e : 0.04	r : 0.02	g : 0.02	a : 0.02	
c : 0.42	= : 0.24	d : 0.10	2 : 0.06	i : 0.04	e : 0.04	g : 0.02	b : 0.02	3 : 0.02	] : 0.02	
= : 0.30	] : 0.22	c : 0.10	3 : 0.08	2 : 0.08	g : 0.04	d : 0.04	i : 0.04	e : 0.04	5 : 0.02	b : 0.02	
= : 0.30	i : 0.14	c : 0.14	3 : 0.08	2 : 0.08	g : 0.06	f : 0.06	b : 0.04	e : 0.04	5 : 0.02	d : 0.02	
= : 0.32	i : 0.14	g : 0.12	3 : 0.10	c : 0.08	f : 0.06	2 : 0.04	b : 0.04	] : 0.04	5 : 0.02	d : 0.02	
= : 0.36	g : 0.16	i : 0.14	c : 0.10	f : 0.06	3 : 0.04	! : 0.02	5 : 0.02	2 : 0.02	d : 0.02	4 : 0.02	b : 0.02	
= : 0.34	i : 0.16	g : 0.14	f : 0.08	3 : 0.08	] : 0.04	c : 0.04	! : 0.02	5 : 0.02	d : 0.02	4 : 0.02	b : 0.02	
= : 0.36	i : 0.14	g : 0.14	c : 0.08	f : 0.08	3 : 0.04	d : 0.04	a : 0.02	] : 0.02	4 : 0.02	2 : 0.02	b : 0.02	
= : 0.34	g : 0.16	i : 0.14	f : 0.08	c : 0.06	] : 0.06	3 : 0.04	2 : 0.04	d : 0.04	4 : 0.02	
= : 0.28	i : 0.14	c : 0.14	g : 0.14	] : 0.06	f : 0.06	a : 0.04	d : 0.04	e : 0.02	h : 0.02	2 : 0.02	4 : 0.02	
= : 0.24	i : 0.14	g : 0.14	c : 0.10	d : 0.06	f : 0.06	b : 0.06	] : 0.04	e : 0.04	r : 0.02	h : 0.02	2 : 0.02	3 : 0.02	4 : 0.02	
= : 0.24	i : 0.16	c : 0.10	g : 0.08	2 : 0.06	f : 0.06	b : 0.06	] : 0.06	e : 0.04	4 : 0.04	r : 0.02	d : 0.02	h : 0.02	3 : 0.02	
] : 0.16	= : 0.12	c : 0.08	2 : 0.08	3 : 0.08	e : 0.08	i : 0.06	d : 0.06	f : 0.04	a : 0.04	: : 0.04	4 : 0.04	g : 0.04	r : 0.02	5 : 0.02	h : 0.02	
c : 0.18	= : 0.12	e : 0.10	b : 0.08	i : 0.06	d : 0.06	f : 0.06	3 : 0.06	2 : 0.06	a : 0.04	: : 0.04	g : 0.04	r : 0.02	5 : 0.02	h : 0.02	4 : 0.02	
c : 0.20	= : 0.14	b : 0.12	e : 0.08	i : 0.06	f : 0.06	3 : 0.06	d : 0.04	] : 0.04	: : 0.04	g : 0.04	r : 0.02	5 : 0.02	h : 0.02	2 : 0.02	4 : 0.02	

#score	727.4500671159573
#seq	49
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_transcript_m2_run1.txt

#BEAR
deeeeeqqqqqqqqeeeee::	chr16:2569966-2570196(+)$1	230	32	53	12.5099
!eeeeeqqqqqqqqeeeee]a	chr16:31141525-31141767(+)$1	242	142	163	14.5943
)))cccqqqqqqqqcccffff	chr1:40888238-40888460(+)$1	222	110	131	13.7034
d!!cccqqqqqqqqccc]ddd	chr17:57724735-57724948(+)$1	213	38	59	14.5553
fff[bbqqqqqqqqbb333ff	chr11:5274357-5274565(-)$1	208	99	120	14.6185
ddd[bbqqqqqqqqbb22ddd	chr12:57107275-57107481(-)$1	206	56	77	13.1598
ffffffqqqqqqqqffffff]	chr16:16043515-16043752(+)$1	237	203	224	14.8610
ffffffqqqqqqqqffffffd	chr4:77968438-77968645(-)$1	207	93	114	14.6413
ffffffqqqqqqqqffffff]	chr15:74328209-74328460(+)$1	251	195	216	14.8610
!!ddddqqqqqqqqdddd]cc	chr2:29023640-29023862(+)$1	222	134	155	14.4018
[eeeeeqqqqqqqqeeeeecc	chr4:122605731-122605998(-)$1	267	182	203	14.5164
ffffffqqqqqqqqffffff:	chr11:47644156-47644428(-)$1	272	66	87	14.0489
bbddddqqqqqqqqdddd]bb	chr13:45912800-45913008(-)$1	208	90	111	13.0135
ccc[bbqqqqqqqqbb]ccc:	chr15:66794947-66795150(-)$1	203	108	129	13.4410
ffffffqqqqqqqqffffffD	chr6:143825030-143825234(-)$1	204	172	193	13.8530
a!!cccqqqqqqqqccc333a	chr22:50037496-50037765(-)$1	269	112	133	15.5984
####bbqqqqqqqqbb4444g	chr10:43891848-43892070(-)$1	222	168	189	14.3414
!!ddddqqqqqqqqddddccc	chr17:80785319-80785575(+)$1	256	97	118	14.2689
ggggggqqqqqqqqggggggg	chrX:153657367-153657604(+)$1	237	123	144	14.7420
ggggggqqqqqqqqggggggg	chr17:78350045-78350310(+)$1	265	19	40	14.7420
##ddddqqqqqqqqdddd444	chr11:46804797-46805014(-)$1	217	151	172	14.3554
ffffffqqqqqqqqffffff5	chr7:127229460-127229707(+)$1	247	71	92	14.2314
%%%cccqqqqqqqqccc22cc	chr18:55273031-55273302(-)$1	271	105	126	13.1670
ggggggqqqqqqqqggggggg	chr12:57036143-57036362(-)$1	219	182	203	14.7420
[bb[bbqqqqqqqqbb]bb]f	chr6:74228988-74229191(-)$1	203	143	164	13.2117
"eeeeeqqqqqqqqeeeee>>	chr20:48808815-48809029(+)$1	214	31	52	14.3138
ffffffqqqqqqqqffffffd	chr12:6646888-6647109(+)$1	221	1	22	14.6413
####bbqqqqqqqqbb333cc	chr11:118621149-118621401(-)$1	252	180	201	14.6549
ffffffqqqqqqqqffffff:	chr7:128497126-128497390(+)$1	264	187	208	14.0489
ccc[bbqqqqqqqqbb]ccc]	chr5:75893177-75893401(+)$1	224	94	115	14.2531
"a[cccqqqqqqqqccc]a33	chr16:30455896-30456130(-)$1	234	64	85	15.4039
ffffffqqqqqqqqffffff]	chr5:43547804-43548055(-)$1	251	134	155	14.8610
ff[cccqqqqqqqqccc]fff	chr1:151373917-151374146(+)$1	229	175	196	15.0365
a[ddddqqqqqqqqdddd333	chr12:48439007-48439266(-)$1	259	211	232	14.5704
!eeeeeqqqqqqqqeeeee]f	chr1:111996853-111997068(+)$1	215	134	155	14.4862
#eeeeeqqqqqqqqeeeee44	chr19:50302632-50302843(+)$1	211	80	101	14.6227
ffffffqqqqqqqqfffffff	chr2:10443087-10443341(+)$1	254	71	92	14.6758
!eeeeeqqqqqqqqeeeee22	chr10:43293878-43294092(+)$1	214	87	108	14.3071
e!!cccqqqqqqqqccc]eee	chr7:30649166-30649415(+)$1	249	28	49	14.7831
ccc[bbqqqqqqqqbbccc::	chr19:18306971-18307252(+)$1	281	108	129	12.5577
cc:cccqqqqqqqqccca[dd	chr1:220179348-220179570(-)$1	222	101	122	13.0934
ffffffqqqqqqqqffffff5	chr7:127229450-127229654(+)$1	204	81	102	14.2314
"""cccqqqqqqqqccc22ff	chr7:107253741-107253978(+)$1	237	31	52	14.9775
[eeeeeqqqqqqqqeeeeecc	chr11:67351855-67352061(+)$1	206	104	125	14.5164
!!ddddqqqqqqqqdddd22f	chr1:179043434-179043659(+)$1	225	144	165	14.0583
eeddddqqqqqqqqdddd333	chr1:154934709-154934985(-)$1	276	125	146	14.2765
e!!cccqqqqqqqqccc22ee	chr9:139758192-139758423(-)$1	231	97	118	14.6596
ffffffqqqqqqqqffffff]	chr19:18679428-18679644(+)$1	216	137	158	14.8610
ddd[bbqqqqqqqqbb]dddd	chr4:1981078-1981350(+)$1	272	85	106	13.3348
bb[cccqqqqqqqqccc22bb	chr13:113963858-113964134(+)$1	276	199	220	13.8956
!!ddddqqqqqqqqdddd000	chr21:34619013-34619275(+)$1	262	135	156	13.4333
ffffffqqqqqqqqffffff4	chr3:158519803-158520064(+)$1	261	71	92	14.8860
dd!!bbqqqqqqqqbb22ddd	chr13:46700325-46700565(-)$1	240	66	87	13.2896
ggggggqqqqqqqqggggggg	chr1:185276603-185276885(-)$1	282	194	215	14.7420
c!!cccqqqqqqqqccc22cc	chr11:59837009-59837224(+)$1	215	151	172	15.0832
!eeeeeqqqqqqqqeeeee22	chr12:120636888-120637108(-)$1	220	37	58	14.3071
ggggggqqqqqqqqggggggg	chr7:99693651-99693872(-)$1	221	179	200	14.7420
ggggggqqqqqqqqggggggg	chr16:30080784-30080989(+)$1	205	18	39	14.7420
f[ddddqqqqqqqqdddd]ff	chr5:177482913-177483182(+)$1	269	80	101	14.1105
c!!cccqqqqqqqqccc4444	chr2:75874174-75874399(+)$1	225	156	177	15.3576
ggg[bbqqqqqqqqbbggggg	chr6:38650536-38650751(-)$1	215	35	56	14.4733
:eeeeeqqqqqqqqeeeee:c	chr14:101200876-101201081(+)$1	205	91	112	12.4739
ggggggqqqqqqqqggggggg	chr11:63402905-63403150(-)$1	245	72	93	14.7420

#otherMatches

#Seq PSSM
GAUGAUUUAGAAUUGUCAUUU	chr16:2569966-2570196(+)$1	230	32	53	12.5099
CCUCAUCGCUUUCAGUGAGUG	chr16:31141525-31141767(+)$1	242	142	163	14.5943
ACUCUCUUCGCCCUGAGUUGC	chr1:40888238-40888460(+)$1	222	110	131	13.7034
AGAUUUUUAACAUUGAAAUGA	chr17:57724735-57724948(+)$1	213	38	59	14.5553
AUUCUGCAAGCAAUCAAAUAA	chr11:5274357-5274565(-)$1	208	99	120	14.6185
AGAGUCACUAUCCGGAAAUCU	chr12:57107275-57107481(-)$1	206	56	77	13.1598
CCGGGCCCGCAGCCGCCCGGG	chr16:16043515-16043752(+)$1	237	203	224	14.8610
CUGUCUAGAUGUUGGGGCAGC	chr4:77968438-77968645(-)$1	207	93	114	14.6413
uugguuaaggaaugaauCAAC	chr15:74328209-74328460(+)$1	251	195	216	14.8610
AAGAGAUAUUUCAUUUUCAGC	chr2:29023640-29023862(+)$1	222	134	155	14.4018
AUCCCAAGAGAGAAUGGGAGA	chr4:122605731-122605998(-)$1	267	182	203	14.5164
AACAUGAAUAGCUCCAUGUUU	chr11:47644156-47644428(-)$1	272	66	87	14.0489
UCCCAAGUUCUUUAUUGGUGA	chr13:45912800-45913008(-)$1	208	90	111	13.0135
GUUGGCAUCGUAGAGUGAACA	chr15:66794947-66795150(-)$1	203	108	129	13.4410
UAUAUAAUGAAAGGUGUGUAU	chr6:143825030-143825234(-)$1	204	172	193	13.8530
UGGAGGGAGGUGAGCCUGAAG	chr22:50037496-50037765(-)$1	269	112	133	15.5984
UAAGUCUAGAGCAUGAAAGUC	chr10:43891848-43892070(-)$1	222	168	189	14.3414
acuugaccacugCUUUAAACC	chr17:80785319-80785575(+)$1	256	97	118	14.2689
AGGAAUGUGCUGCUGUUCCUG	chrX:153657367-153657604(+)$1	237	123	144	14.7420
UUGAUACAUCUUAAUGUUAAG	chr17:78350045-78350310(+)$1	265	19	40	14.7420
AUUGGCUAUCAAAUGCCAUAA	chr11:46804797-46805014(-)$1	217	151	172	14.3554
UCUGCAGGCUUCAAUGUAGAA	chr7:127229460-127229707(+)$1	247	71	92	14.2314
UCAGCCCCCCAAACGGCCUUU	chr18:55273031-55273302(-)$1	271	105	126	13.1670
ucagcuacugaggaggcugag	chr12:57036143-57036362(-)$1	219	182	203	14.7420
UAAUAAUUCUAGGUUUCUUUA	chr6:74228988-74229191(-)$1	203	143	164	13.2117
ACGUCUAUGUGUACAGAUGAA	chr20:48808815-48809029(+)$1	214	31	52	14.3138
UGAGCUGAACGGGAAGCUCAC	chr12:6646888-6647109(+)$1	221	1	22	14.6413
GAUACAUAAACUUUUGCAGGA	chr11:118621149-118621401(-)$1	252	180	201	14.6549
UGGCAACUACCUCAUUGCCAU	chr7:128497126-128497390(+)$1	264	187	208	14.0489
GCAGUGGACCAUAUCAAUGCU	chr5:75893177-75893401(+)$1	224	94	115	14.2531
ACCUUGCAAAACAACAAAGAA	chr16:30455896-30456130(-)$1	234	64	85	15.4039
AAACUGAAAUUGAACAGUUUG	chr5:43547804-43548055(-)$1	251	134	155	14.8610
GCCCACAUGAUCAGGUGAGUA	chr1:151373917-151374146(+)$1	229	175	196	15.0365
UUGUCUACAGCCAGAGACCUU	chr12:48439007-48439266(-)$1	259	211	232	14.5704
UUUGCCUAGUCUCUGGUAAUA	chr1:111996853-111997068(+)$1	215	134	155	14.4862
CGUCAAGACGCACAUUGACAC	chr19:50302632-50302843(+)$1	211	80	101	14.6227
GCGGGCGCACGGAGGCCCGCG	chr2:10443087-10443341(+)$1	254	71	92	14.6758
GGGUUGUUUCGUGUCAACCAG	chr10:43293878-43294092(+)$1	214	87	108	14.3071
UUUUAGCUUGAUAACUAUGGA	chr7:30649166-30649415(+)$1	249	28	49	14.7831
CCUAGCCCUUCUCAGCAGGAA	chr19:18306971-18307252(+)$1	281	108	129	12.5577
GUAUGUCAACAAGAACAGUAA	chr1:220179348-220179570(-)$1	222	101	122	13.0934
UCUGCAGGCUUCAAUGUAGAA	chr7:127229450-127229654(+)$1	204	81	102	14.2314
CUAGCCCUUUCUAAGGCACAA	chr7:107253741-107253978(+)$1	237	31	52	14.9775
GCUGGCAGAUCAGGGCCAGAG	chr11:67351855-67352061(+)$1	206	104	125	14.5164
GAUUUGUGGUCUUUCAAAUAC	chr1:179043434-179043659(+)$1	225	144	165	14.0583
CCUGGCCUCCUUUUGCUGUUU	chr1:154934709-154934985(-)$1	276	125	146	14.2765
UAGGCUAUCUUAGCGGCACAG	chr9:139758192-139758423(-)$1	231	97	118	14.6596
GGGGGACAAGGCUCUCUCCCG	chr19:18679428-18679644(+)$1	216	137	158	14.8610
CAUUUUUUUGUACUAAUGUGA	chr4:1981078-1981350(+)$1	272	85	106	13.3348
GAAGAGGACAUACACUCACUC	chr13:113963858-113964134(+)$1	276	199	220	13.8956
CACAACGUUGUUCAGUUGCUC	chr21:34619013-34619275(+)$1	262	135	156	13.4333
CGGGCGCUGCUUCCUGCCUGG	chr3:158519803-158520064(+)$1	261	71	92	14.8860
AAACCAGAACAGUAUGAAUUU	chr13:46700325-46700565(-)$1	240	66	87	13.2896
AUGCUUAUAUUCAGGAGCAUU	chr1:185276603-185276885(-)$1	282	194	215	14.7420
AAAUGAUUAAUCAUUCACAUG	chr11:59837009-59837224(+)$1	215	151	172	15.0832
GUCUCCCUCUUCCUGGAGAAU	chr12:120636888-120637108(-)$1	220	37	58	14.3071
CCUGGUGCUGGCUGACCAGGG	chr7:99693651-99693872(-)$1	221	179	200	14.7420
CGCCUGCUCUGCUCCAGGUGC	chr16:30080784-30080989(+)$1	205	18	39	14.7420
UGUGUUCAAAGACAAGCGGAU	chr5:177482913-177483182(+)$1	269	80	101	14.1105
GGAACCGGAACGCAGGUGAGG	chr2:75874174-75874399(+)$1	225	156	177	15.3576
GUUACUUGCUUUUCAGAAUAU	chr6:38650536-38650751(-)$1	215	35	56	14.4733
CCCCUCUCCUCACCGAGGGCC	chr14:101200876-101201081(+)$1	205	91	112	12.4739
AUGUUUAUAUUUUAAGGCAUA	chr11:63402905-63403150(-)$1	245	72	93	14.7420

#DB
)(((((........)))))..	chr16:2569966-2570196(+)$1	1	32	53	12.5099
.(((((........))))).)	chr16:31141525-31141767(+)$1	1	142	163	14.5943
...(((........)))))))	chr1:40888238-40888460(+)$1	1	110	131	13.7034
(..(((........))).)))	chr17:57724735-57724948(+)$1	1	38	59	14.5553
(((.((........))...))	chr11:5274357-5274565(-)$1	1	99	120	14.6185
(((.((........))..)))	chr12:57107275-57107481(-)$1	1	56	77	13.1598
((((((........)))))).	chr16:16043515-16043752(+)$1	1	203	224	14.8610
((((((........)))))))	chr4:77968438-77968645(-)$1	1	93	114	14.6413
((((((........)))))).	chr15:74328209-74328460(+)$1	1	195	216	14.8610
..((((........)))).))	chr2:29023640-29023862(+)$1	1	134	155	14.4018
.(((((........)))))))	chr4:122605731-122605998(-)$1	1	182	203	14.5164
((((((........)))))).	chr11:47644156-47644428(-)$1	1	66	87	14.0489
((((((........)))).))	chr13:45912800-45913008(-)$1	1	90	111	13.0135
(((.((........)).))).	chr15:66794947-66795150(-)$1	1	108	129	13.4410
((((((........)))))))	chr6:143825030-143825234(-)$1	1	172	193	13.8530
(..(((........)))...)	chr22:50037496-50037765(-)$1	1	112	133	15.5984
....((........))....)	chr10:43891848-43892070(-)$1	1	168	189	14.3414
..((((........)))))))	chr17:80785319-80785575(+)$1	1	97	118	14.2689
((((((........)))))))	chrX:153657367-153657604(+)$1	1	123	144	14.7420
((((((........)))))))	chr17:78350045-78350310(+)$1	1	19	40	14.7420
..((((........))))...	chr11:46804797-46805014(-)$1	1	151	172	14.3554
((((((........)))))).	chr7:127229460-127229707(+)$1	1	71	92	14.2314
...(((........)))..))	chr18:55273031-55273302(-)$1	1	105	126	13.1670
((((((........)))))))	chr12:57036143-57036362(-)$1	1	182	203	14.7420
.((.((........)).)).)	chr6:74228988-74229191(-)$1	1	143	164	13.2117
.(((((........)))))..	chr20:48808815-48809029(+)$1	1	31	52	14.3138
((((((........))))))(	chr12:6646888-6647109(+)$1	1	1	22	14.6413
....((........))...))	chr11:118621149-118621401(-)$1	1	180	201	14.6549
((((((........)))))).	chr7:128497126-128497390(+)$1	1	187	208	14.0489
(((.((........)).))).	chr5:75893177-75893401(+)$1	1	94	115	14.2531
.(.(((........))).)..	chr16:30455896-30456130(-)$1	1	64	85	15.4039
((((((........)))))).	chr5:43547804-43548055(-)$1	1	134	155	14.8610
((.(((........))).)))	chr1:151373917-151374146(+)$1	1	175	196	15.0365
(.((((........))))...	chr12:48439007-48439266(-)$1	1	211	232	14.5704
.(((((........))))).)	chr1:111996853-111997068(+)$1	1	134	155	14.4862
.(((((........)))))..	chr19:50302632-50302843(+)$1	1	80	101	14.6227
((((((........)))))))	chr2:10443087-10443341(+)$1	1	71	92	14.6758
.(((((........)))))..	chr10:43293878-43294092(+)$1	1	87	108	14.3071
(..(((........))).)))	chr7:30649166-30649415(+)$1	1	28	49	14.7831
(((.((........)))))..	chr19:18306971-18307252(+)$1	1	108	129	12.5577
)).(((........)))(.((	chr1:220179348-220179570(-)$1	1	101	122	13.0934
((((((........)))))).	chr7:127229450-127229654(+)$1	1	81	102	14.2314
...(((........)))..))	chr7:107253741-107253978(+)$1	1	31	52	14.9775
.(((((........)))))))	chr11:67351855-67352061(+)$1	1	104	125	14.5164
..((((........))))..)	chr1:179043434-179043659(+)$1	1	144	165	14.0583
((((((........))))...	chr1:154934709-154934985(-)$1	1	125	146	14.2765
(..(((........)))..))	chr9:139758192-139758423(-)$1	1	97	118	14.6596
((((((........)))))).	chr19:18679428-18679644(+)$1	1	137	158	14.8610
(((.((........)).))))	chr4:1981078-1981350(+)$1	1	85	106	13.3348
((.(((........)))..))	chr13:113963858-113964134(+)$1	1	199	220	13.8956
..((((........))))...	chr21:34619013-34619275(+)$1	1	135	156	13.4333
((((((........)))))).	chr3:158519803-158520064(+)$1	1	71	92	14.8860
((..((........))..)))	chr13:46700325-46700565(-)$1	1	66	87	13.2896
((((((........)))))))	chr1:185276603-185276885(-)$1	1	194	215	14.7420
(..(((........)))..))	chr11:59837009-59837224(+)$1	1	151	172	15.0832
.(((((........)))))..	chr12:120636888-120637108(-)$1	1	37	58	14.3071
((((((........)))))))	chr7:99693651-99693872(-)$1	1	179	200	14.7420
((((((........)))))))	chr16:30080784-30080989(+)$1	1	18	39	14.7420
(.((((........)))).))	chr5:177482913-177483182(+)$1	1	80	101	14.1105
(..(((........)))....	chr2:75874174-75874399(+)$1	1	156	177	15.3576
(((.((........)))))))	chr6:38650536-38650751(-)$1	1	35	56	14.4733
.(((((........))))).(	chr14:101200876-101201081(+)$1	1	91	112	12.4739
((((((........)))))))	chr11:63402905-63403150(-)$1	1	72	93	14.7420

#PSSM
f : 0.25	! : 0.12	g : 0.12	c : 0.09	d : 0.07	# : 0.06	[ : 0.04	" : 0.04	e : 0.04	b : 0.03	a : 0.03	) : 0.01	% : 0.01	: : 0.01	
f : 0.23	e : 0.17	! : 0.15	g : 0.12	c : 0.06	d : 0.04	b : 0.04	# : 0.04	[ : 0.03	) : 0.01	% : 0.01	a : 0.01	" : 0.01	
f : 0.22	d : 0.17	e : 0.15	g : 0.12	! : 0.11	c : 0.04	[ : 0.04	# : 0.03	) : 0.01	% : 0.01	b : 0.01	: : 0.01	" : 0.01	
c : 0.20	f : 0.20	e : 0.15	d : 0.14	[ : 0.12	g : 0.11	# : 0.03	! : 0.01	
c : 0.20	f : 0.20	b : 0.17	e : 0.15	d : 0.14	g : 0.11	
c : 0.20	f : 0.20	b : 0.17	e : 0.15	d : 0.14	g : 0.11	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.20	f : 0.20	b : 0.17	e : 0.15	d : 0.14	g : 0.11	
c : 0.20	f : 0.20	b : 0.17	e : 0.15	d : 0.14	g : 0.11	
c : 0.22	f : 0.20	e : 0.15	d : 0.14	g : 0.12	] : 0.06	3 : 0.03	2 : 0.03	4 : 0.01	
f : 0.22	e : 0.15	d : 0.15	g : 0.12	2 : 0.11	] : 0.06	3 : 0.04	c : 0.04	4 : 0.03	b : 0.01	a : 0.01	
f : 0.23	e : 0.17	g : 0.12	2 : 0.09	3 : 0.07	d : 0.06	c : 0.06	] : 0.04	4 : 0.04	b : 0.01	a : 0.01	[ : 0.01	0 : 0.01	
f : 0.28	c : 0.14	g : 0.12	d : 0.07	3 : 0.06	4 : 0.06	: : 0.04	] : 0.04	2 : 0.04	b : 0.03	e : 0.03	> : 0.01	0 : 0.01	
f : 0.14	g : 0.14	c : 0.12	d : 0.11	: : 0.07	] : 0.07	4 : 0.06	3 : 0.04	a : 0.03	b : 0.03	5 : 0.03	2 : 0.03	e : 0.03	D : 0.01	> : 0.01	0 : 0.01	

#score	899.68547353078
#seq	63
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_transcript_m3_run2.txt

#BEAR
EEEFFFFFF~~~~CCC}FFFFFF	chr1:154306612-154306870(+)$1	258	173	196	10.8365
B}IIIIIIIII}DDDD:::::::	chr3:156272627-156272848(-)$1	221	198	221	11.0242
IIIIIIIII}DDDDZZZDDDD}G	chr4:4281243-4281499(-)$1	256	215	238	12.0320
IIIIIIIII?????EEEEE}BB}	chr20:39792605-39792845(+)$1	240	152	175	13.3031
EEEE}BBYYBB}DDDDYYEEEEE	chr2:70528922-70529166(-)$1	244	183	206	11.5949
HHHHHHH}CCC}DDDD}EEEEEY	chr7:74173051-74173348(+)$1	297	260	283	13.4088
}FFFFFF}DDDDDDDD}CCC}EE	chr9:139264832-139265104(-)$1	272	223	246	10.7464
IIIYYDDDDZZZDDDDZZZCCCY	chr10:129908503-129908770(-)$1	267	231	254	12.2480
~~IIIIIIIII}DDDDEEEEE::	chr2:228678581-228678844(+)$1	263	240	263	12.6831
JJJJJJJJ~~~~DDDD}EEEEE:	chr17:40034218-40034468(-)$1	250	113	136	15.8792
IIIIIIIIIEEEEE}EEEEE}BB	chr7:99696727-99697009(-)$1	282	139	162	13.7279
EEEE}A}A~~~~DDDDYYCCCYY	chr3:184046668-184046921(+)$1	253	145	168	12.3985
JJJJJJJJJBB~~~~EEEEE}BB	chr20:57569040-57569289(+)$1	249	177	200	15.2391
GGGFFFFFFZZZDDDD:::::::	chr12:56712947-56713235(-)$1	288	265	288	10.5284
FFFF}DDDDZZZEEEEE}A}GGG	chr17:63556805-63557042(-)$1	237	168	191	10.8894
IIIIIIIIIZZZDDDDEEEEE}E	chr12:120117691-120117989(+)$1	298	251	274	17.0813
JJJJJJJ}CCC}DDDD:::::::	chr17:40934862-40935115(+)$1	253	205	228	11.6104
FFFFF}CCCZZZEEEEE}A}DDD	chr16:69788614-69788861(-)$1	247	183	206	11.9553
~~FFFFFFCCC}EEEEE~~~~CC	chr22:24224910-24225220(+)$1	310	263	286	10.7889
JJJJJJJJJZZZDDDDYYCCC}A	chr20:44581093-44581357(-)$1	264	184	207	16.9384
JJJJJJJJJJABBFFFFFFGGGG	chr16:29845286-29845578(+)$1	292	237	260	10.7132
F}IIIIIIIII}DDDDFFFFFF{	chr6:32123627-32123886(+)$1	259	125	148	12.4330
BJJJJJJJJJJ}DDDD:::::DD	chr15:22925769-22926045(+)$1	276	105	128	11.4933
JJJJJJJJJZZZCCCZZZDDDDY	chr15:101983587-101983904(-)$1	317	271	294	13.7348
JJJJJJCCCYYFFFFFFBBYYBB	chr5:40835137-40835412(-)$1	275	242	265	11.4119
D}GGGGGGGZZZDDDDYYBBGGG	chr7:150771471-150771706(+)$1	235	154	177	11.9095
}CCC}BBCCCA}DDDD~~~~CCC	chr17:37872092-37872299(+)$1	207	160	183	11.0125
IIIIII}BBZZZDDDD:::::::	chr20:34832735-34832992(+)$1	257	233	256	12.7749
G}GGGGGGG~~~~BBYYFFFFFF	chr17:74394774-74395018(-)$1	244	190	213	10.4795
DHHHHHHHHZZZDDDD~~~~DDD	chr2:202027722-202027934(+)$1	212	179	202	14.5530
HHHHHHHH~~~~DDDDYYCCC::	chr10:91461293-91461582(+)$1	289	209	232	14.0028
JJJJJJJJJYYAEEEEEBBYYAY	chr22:37915201-37915454(-)$1	253	208	231	14.8181
CC}FFFFFFZZZDDDDZZZCCC?	chr2:10588035-10588365(-)$1	330	279	302	12.7142
HHHHHHHH}AZZZA}FFFFFF::	chr1:11709826-11710123(-)$1	297	269	292	11.3398
IIIIIIIIIZZZDDDDYYAYYCC	chr17:80019754-80020008(-)$1	254	138	161	17.5017
JJJJJJJJJ______CCCZZZHH	chr7:142962055-142962329(+)$1	274	239	262	12.0342
~~FFFFFF~~~~DDDD}EEEEEC	chr16:18864794-18865038(-)$1	244	193	216	12.8996
:HHHHHHHHZZZBB}DDDD}BBE	chr19:42797894-42798196(+)$1	302	245	268	12.3887
IIIIIIIII~~~~CCC}DDDD}D	chr5:154173721-154173972(+)$1	251	196	219	14.4672
YHHHHHHHH}BBCCCYYDDDD::	chr17:71196797-71197049(+)$1	252	157	180	10.8093
IIIIIIIIIZZZEEEEE}BB:::	chr22:46733727-46733989(+)$1	262	229	252	15.0963
JJJJJJJJJZZZDDDD:::::::	chr11:294068-294329(+)$1	261	236	259	13.7946
JJJJJJJJJJA}DDDD?????DD	chr17:61766069-61766353(+)$1	284	234	257	13.0520
JJJJJJJJJJJJDDDD}HHHHHH	chr2:131878392-131878705(+)$1	313	260	283	11.1985
IIIIIIIII~~~~GGGGGGG}BB	chr20:47630131-47630373(+)$1	242	219	242	10.7883
DCCC}DDDDZZZDDDD}EEEEE}	chr2:150444029-150444282(-)$1	253	107	130	11.4695
EEEYYFFFFFF}DDDDYYCCC}D	chr8:145005958-145006185(-)$1	227	178	201	10.6146
FYYBBCCCBBYYDDDDYYEEEEE	chr1:95368820-95369091(-)$1	271	230	253	10.9892
JJJJJJJJJ~~~~CCCDDDD:::	chr14:64906855-64907144(+)$1	289	257	280	12.9662
IIIIIIII}BB~~~~DDDDCCC:	chr10:71917400-71917670(-)$1	270	218	241	14.1577

#otherMatches

#Seq PSSM
GCCAGCCCUCACUCAGGAGUAUG	chr1:154306612-154306870(+)$1	258	173	196	10.8365
CCGGCCGGGGGUCGGCAAUCUCU	chr3:156272627-156272848(-)$1	221	198	221	11.0242
AGUUCUUUUUCUUUUUCUUUCUU	chr4:4281243-4281499(-)$1	256	215	238	12.0320
UUACCAUGGGCACACCCUUACCA	chr20:39792605-39792845(+)$1	240	152	175	13.3031
CGACGCCUUGCACUGCAGCCGCG	chr2:70528922-70529166(-)$1	244	183	206	11.5949
AGGUGGGAGCCUUCCCGGAUAUU	chr7:74173051-74173348(+)$1	297	260	283	13.4088
GCUGGACAGGAGCAGCCCCUACA	chr9:139264832-139265104(-)$1	272	223	246	10.7464
CUGGCACAAAAUACCAUUUCCGU	chr10:129908503-129908770(-)$1	267	231	254	12.2480
GUGAUGGAAGUUGUCUGCCCAUG	chr2:228678581-228678844(+)$1	263	240	263	12.6831
GUAGGUGCCUUAAAUGUCUCUAA	chr17:40034218-40034468(-)$1	250	113	136	15.8792
AUUGGUUCUCCAGGAUCUUGUUU	chr7:99696727-99697009(-)$1	282	139	162	13.7279
CGGUGUGGUUUUGGCUGUUUGCU	chr3:184046668-184046921(+)$1	253	145	168	12.3985
CCCCAUCCUGGAGAAUGACAGCA	chr20:57569040-57569289(+)$1	249	177	200	15.2391
GCCAGGUGCCCAAGGACCAAGUC	chr12:56712947-56713235(-)$1	288	265	288	10.5284
GGCAGGCCGGCUAUUUCGGGGCG	chr17:63556805-63557042(-)$1	237	168	191	10.8894
ugaagcuggcccgggaauuugug	chr12:120117691-120117989(+)$1	298	251	274	17.0813
cccucucacccaaccuuuguccc	chr17:40934862-40935115(+)$1	253	205	228	11.6104
GAGCGUUGCUUGGUGCGGGUGGG	chr16:69788614-69788861(-)$1	247	183	206	11.9553
gcgguggcucaugccuguaagcc	chr22:24224910-24225220(+)$1	310	263	286	10.7889
UGUCUCUCUACAGCUCACCGCAG	chr20:44581093-44581357(-)$1	264	184	207	16.9384
CCACCCACUGCUCUUCCUUCCCC	chr16:29845286-29845578(+)$1	292	237	260	10.7132
AUGGUGAGUGGGGAUGCUGAACU	chr6:32123627-32123886(+)$1	259	125	148	12.4330
CCCGCCAUCCUCGCUGCUCUACC	chr15:22925769-22926045(+)$1	276	105	128	11.4933
CAAGACAGGUGUAGCUACGAAUC	chr15:101983587-101983904(-)$1	317	271	294	13.7348
GAAAGAGGCAUGCGGUGGCCCUC	chr5:40835137-40835412(-)$1	275	242	265	11.4119
UCUAGGUGUUCCCCUCCAGCCUC	chr7:150771471-150771706(+)$1	235	154	177	11.9095
GGCCCUGGCAGCAGCGUUCUUGG	chr17:37872092-37872299(+)$1	207	160	183	11.0125
UUGGGAUAUUUCCUGCUUUUCUC	chr20:34832735-34832992(+)$1	257	233	256	12.7749
GUCAGAGCUAAAAUGAGGUCCAG	chr17:74394774-74395018(-)$1	244	190	213	10.4795
ugaaaagugguaucugacuguuc	chr2:202027722-202027934(+)$1	212	179	202	14.5530
AGGUGGGGAAACGGCUUUGGCAA	chr10:91461293-91461582(+)$1	289	209	232	14.0028
CCCGUGCGCCUCUUGCCCGCAGA	chr22:37915201-37915454(-)$1	253	208	231	14.8181
GGCCCGGGGUUCUCCCGCGGCUG	chr2:10588035-10588365(-)$1	330	279	302	12.7142
CCAUCGUGGUGAAGGACUGGUGA	chr1:11709826-11710123(-)$1	297	269	292	11.3398
CUCUGUCCUAGUUGCUGACGGUG	chr17:80019754-80020008(-)$1	254	138	161	17.5017
UCCUCCCAGUCACACCCCUCUCC	chr7:142962055-142962329(+)$1	274	239	262	12.0342
UAAAGUUUAUAAUGUUAUGCUGG	chr16:18864794-18865038(-)$1	244	193	216	12.8996
UUCGGCCUGAGGAGGUGCUGCCC	chr19:42797894-42798196(+)$1	302	245	268	12.3887
AGCAGUUUCAGCCUCAGGCUGAA	chr5:154173721-154173972(+)$1	251	196	219	14.4672
AAUCCUAGUGGUAUUUUGACUGU	chr17:71196797-71197049(+)$1	252	157	180	10.8093
CGGUGGUGCUGAAGACUGCAAGA	chr22:46733727-46733989(+)$1	262	229	252	15.0963
UGUCGGGGAUCUCCAGAGUGAGC	chr11:294068-294329(+)$1	261	236	259	13.7946
GGGUGGGUUCGUCCAUGCAGUGC	chr17:61766069-61766353(+)$1	284	234	257	13.0520
UAUGAGUGCUAUGGCCUUGAGUU	chr2:131878392-131878705(+)$1	313	260	283	11.1985
GACUUUGUUUCCUCCAGGGGACU	chr20:47630131-47630373(+)$1	242	219	242	10.7883
ACGGAUGGUUUCCGCCCAUGUUA	chr2:150444029-150444282(-)$1	253	107	130	11.4695
CAGACGUUGCCAGCUGCUGCCUG	chr8:145005958-145006185(-)$1	227	178	201	10.6146
UAUUCUACAGAUAUCUUUAAUGC	chr1:95368820-95369091(-)$1	271	230	253	10.9892
uauuuugcuaauuacaagauaau	chr14:64906855-64907144(+)$1	289	257	280	12.9662
AAGGAAUAUAGCUCAGUAGUGCC	chr10:71917400-71917670(-)$1	270	218	241	14.1577

#DB
)))))))))....))).))))))	chr1:154306612-154306870(+)$1	1	173	196	10.8365
).))))))))).)))).......	chr3:156272627-156272848(-)$1	1	198	221	11.0242
))))))))).))))...)))).)	chr4:4281243-4281499(-)$1	1	215	238	12.0320
))))))))).....))))).)).	chr20:39792605-39792845(+)$1	1	152	175	13.3031
)))).))..)).))))..)))))	chr2:70528922-70529166(-)$1	1	183	206	11.5949
))))))).))).)))).))))).	chr7:74173051-74173348(+)$1	1	260	283	13.4088
.)))))).)))))))).))).))	chr9:139264832-139265104(-)$1	1	223	246	10.7464
)))..))))...))))...))).	chr10:129908503-129908770(-)$1	1	231	254	12.2480
..))))))))).)))))))))..	chr2:228678581-228678844(+)$1	1	240	263	12.6831
))))))))....)))).))))).	chr17:40034218-40034468(-)$1	1	113	136	15.8792
)))))))))))))).))))).))	chr7:99696727-99697009(-)$1	1	139	162	13.7279
)))).).)....))))..)))..	chr3:184046668-184046921(+)$1	1	145	168	12.3985
)))))))))))....))))).))	chr20:57569040-57569289(+)$1	1	177	200	15.2391
)))))))))...)))).......	chr12:56712947-56713235(-)$1	1	265	288	10.5284
)))).))))...))))).).)))	chr17:63556805-63557042(-)$1	1	168	191	10.8894
)))))))))...))))))))).)	chr12:120117691-120117989(+)$1	1	251	274	17.0813
))))))).))).)))).......	chr17:40934862-40935115(+)$1	1	205	228	11.6104
))))).)))...))))).).)))	chr16:69788614-69788861(-)$1	1	183	206	11.9553
..))))))))).)))))....))	chr22:24224910-24225220(+)$1	1	263	286	10.7889
)))))))))...))))..))).)	chr20:44581093-44581357(-)$1	1	184	207	16.9384
)))))))))))))))))))))))	chr16:29845286-29845578(+)$1	1	237	260	10.7132
).))))))))).))))((((((.	chr6:32123627-32123886(+)$1	1	125	148	12.4330
))))))))))).)))).....((	chr15:22925769-22926045(+)$1	1	105	128	11.4933
)))))))))...)))...)))).	chr15:101983587-101983904(-)$1	1	271	294	13.7348
)))))))))..))))))))..))	chr5:40835137-40835412(-)$1	1	242	265	11.4119
).)))))))...))))..)))))	chr7:150771471-150771706(+)$1	1	154	177	11.9095
.))).)))))).))))....)))	chr17:37872092-37872299(+)$1	1	160	183	11.0125
)))))).))...)))).......	chr20:34832735-34832992(+)$1	1	233	256	12.7749
).)))))))....))..))))))	chr17:74394774-74395018(-)$1	1	190	213	10.4795
)))))))))...))))....)))	chr2:202027722-202027934(+)$1	1	179	202	14.5530
))))))))....))))..)))..	chr10:91461293-91461582(+)$1	1	209	232	14.0028
)))))))))..))))))))..).	chr22:37915201-37915454(-)$1	1	208	231	14.8181
)).))))))...))))...))).	chr2:10588035-10588365(-)$1	1	279	302	12.7142
)))))))).)...).))))))..	chr1:11709826-11710123(-)$1	1	269	292	11.3398
)))))))))...))))..)..))	chr17:80019754-80020008(-)$1	1	138	161	17.5017
)))))))))......)))...))	chr7:142962055-142962329(+)$1	1	239	262	12.0342
..))))))....)))).))))))	chr16:18864794-18865038(-)$1	1	193	216	12.8996
.))))))))...)).)))).)))	chr19:42797894-42798196(+)$1	1	245	268	12.3887
)))))))))....))).)))).)	chr5:154173721-154173972(+)$1	1	196	219	14.4672
.)))))))).)))))..))))..	chr17:71196797-71197049(+)$1	1	157	180	10.8093
)))))))))...))))).))...	chr22:46733727-46733989(+)$1	1	229	252	15.0963
)))))))))...)))).......	chr11:294068-294329(+)$1	1	236	259	13.7946
))))))))))).)))).....))	chr17:61766069-61766353(+)$1	1	234	257	13.0520
)))))))))))))))).))))))	chr2:131878392-131878705(+)$1	1	260	283	11.1985
)))))))))....))))))).))	chr20:47630131-47630373(+)$1	1	219	242	10.7883
)))).))))...)))).))))).	chr2:150444029-150444282(-)$1	1	107	130	11.4695
)))..)))))).))))..))).)	chr8:145005958-145006185(-)$1	1	178	201	10.6146
)..)))))))..))))..)))))	chr1:95368820-95369091(-)$1	1	230	253	10.9892
)))))))))....)))))))...	chr14:64906855-64907144(+)$1	1	257	280	12.9662
)))))))).))....))))))).	chr10:71917400-71917670(-)$1	1	218	241	14.1577

#PSSM
J : 0.25	I : 0.21	E : 0.08	F : 0.08	H : 0.06	~ : 0.06	D : 0.06	B : 0.04	} : 0.04	G : 0.04	C : 0.02	: : 0.02	Y : 0.02	
J : 0.27	I : 0.21	H : 0.12	E : 0.08	} : 0.08	F : 0.06	~ : 0.06	C : 0.06	G : 0.02	Y : 0.02	
I : 0.27	J : 0.27	H : 0.12	F : 0.10	E : 0.08	G : 0.06	C : 0.04	} : 0.02	Y : 0.02	
J : 0.27	I : 0.25	F : 0.16	H : 0.12	E : 0.04	Y : 0.04	G : 0.04	C : 0.04	B : 0.02	
J : 0.27	I : 0.25	F : 0.14	H : 0.12	} : 0.10	Y : 0.04	G : 0.04	B : 0.02	
J : 0.27	I : 0.25	F : 0.14	H : 0.12	D : 0.06	B : 0.04	G : 0.04	A : 0.02	} : 0.02	C : 0.02	
J : 0.25	I : 0.23	F : 0.14	H : 0.12	D : 0.06	C : 0.06	B : 0.04	} : 0.04	G : 0.04	
I : 0.23	J : 0.23	F : 0.12	H : 0.10	C : 0.08	} : 0.06	D : 0.06	G : 0.04	Y : 0.02	A : 0.02	B : 0.02	
I : 0.21	J : 0.21	C : 0.12	F : 0.08	D : 0.08	~ : 0.08	H : 0.06	G : 0.04	B : 0.04	} : 0.04	Y : 0.02	
Z : 0.32	~ : 0.18	B : 0.08	C : 0.08	J : 0.08	I : 0.06	} : 0.04	Y : 0.04	? : 0.02	D : 0.02	E : 0.02	A : 0.02	_ : 0.02	F : 0.02	
Z : 0.34	~ : 0.18	B : 0.08	I : 0.06	C : 0.06	A : 0.06	Y : 0.06	D : 0.04	J : 0.04	? : 0.02	E : 0.02	_ : 0.02	F : 0.02	
Z : 0.34	~ : 0.21	} : 0.21	D : 0.04	B : 0.04	? : 0.02	E : 0.02	F : 0.02	A : 0.02	_ : 0.02	J : 0.02	Y : 0.02	
D : 0.58	~ : 0.14	E : 0.12	B : 0.04	C : 0.04	? : 0.02	F : 0.02	Z : 0.02	_ : 0.02	
D : 0.58	E : 0.12	C : 0.10	~ : 0.04	F : 0.04	B : 0.04	? : 0.02	A : 0.02	_ : 0.02	G : 0.02	
D : 0.56	E : 0.12	C : 0.10	} : 0.06	~ : 0.04	F : 0.04	Z : 0.02	B : 0.02	_ : 0.02	G : 0.02	
D : 0.60	E : 0.16	C : 0.08	F : 0.06	Z : 0.04	Y : 0.04	G : 0.02	
E : 0.19	Y : 0.19	} : 0.16	: : 0.12	Z : 0.08	F : 0.08	D : 0.06	~ : 0.04	C : 0.02	? : 0.02	G : 0.02	
E : 0.18	Y : 0.16	: : 0.12	D : 0.12	F : 0.10	Z : 0.06	} : 0.06	~ : 0.06	C : 0.04	B : 0.04	? : 0.02	H : 0.02	G : 0.02	
E : 0.21	D : 0.14	: : 0.12	F : 0.10	C : 0.10	B : 0.08	Z : 0.06	A : 0.06	~ : 0.06	? : 0.02	H : 0.02	G : 0.02	
E : 0.19	C : 0.16	: : 0.12	D : 0.10	F : 0.08	} : 0.08	~ : 0.06	Y : 0.06	G : 0.04	B : 0.04	Z : 0.02	? : 0.02	H : 0.02	
: : 0.16	E : 0.16	C : 0.16	D : 0.12	F : 0.08	} : 0.08	G : 0.06	Y : 0.06	B : 0.04	~ : 0.02	Z : 0.02	? : 0.02	H : 0.02	
: : 0.21	E : 0.14	B : 0.12	C : 0.12	} : 0.10	D : 0.10	F : 0.06	G : 0.06	H : 0.04	Y : 0.02	A : 0.02	
: : 0.25	D : 0.12	E : 0.10	Y : 0.10	G : 0.08	B : 0.08	C : 0.08	F : 0.04	} : 0.04	H : 0.04	A : 0.02	{ : 0.02	? : 0.02	

#score	632.5342835515216
#seq	50
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_UTR_m3_run2.txt

#BEAR
[ccc[a!!eeeeemmmmeeeee22ac	chr6:17615427-17615653(-)$1	226	32	58	11.1205
ffffff"""ddddllldddd333fff	chr1:203821433-203821661(+)$1	228	148	174	12.0321
ddddccc[eeeeemmmmeeeee]ccc	chr2:98272936-98273224(-)$1	288	22	48	10.5695
ggggggg!!ddddmmmmddddggggg	chr12:46752184-46752510(-)$1	326	201	227	13.5057
c[eeeee!!ddddmmmmdddd333ee	chr15:34672616-34672910(-)$1	294	155	181	14.3980
bggggggg[ddddmmmmddddggggg	chr12:131274228-131274503(-)$1	275	39	65	12.6829
eeee:ccc[ddddmmmmdddd]ccc:	chr3:39137793-39138041(+)$1	248	53	79	11.6536
e[a[a"""eeeeellleeeee]a]a]	chr1:29474183-29474435(-)$1	252	191	217	10.0548
d!!dddd"""cccmmmmccc22dddd	chr11:61640971-61641237(-)$1	266	113	139	10.4404
ggggg"""eeeeemmmmeeeee22gg	chr8:23429473-23429697(+)$1	224	183	209	11.5042
#============mmmm=========	chr8:128753342-128753597(+)$1	255	17	43	9.3418
!!dddd"""ddddllldddd333ddd	chr16:88718623-88719014(-)$1	391	196	222	13.5698
g:dddd[a[ddddmmmmddddadddd	chr7:1473994-1474243(-)$1	249	181	207	12.5393
]cccccc!!ddddmmmmdddd333cc	chr6:4064891-4065297(+)$1	406	145	171	14.8606
ggggg"""eeeeemmmmeeeeegggg	chr6:143509275-143509518(+)$1	243	201	227	11.0456
ff[ddddddddoooooodddd333dd	chr5:179041322-179041567(-)$1	245	10	36	10.5163
h!!ccc[a[ddddllldddd]accc]	chrX:153671437-153671682(+)$1	245	59	85	11.7166
eeee"""a[ddddmmmmdddd]a444	chr15:93568448-93568688(+)$1	240	111	137	14.4181
ccc::ccc[ddddmmmmdddd]cccc	chr5:179041762-179042019(-)$1	257	78	104	11.6419
::ffffff[ddddmmmmdddd333ff	chr17:80445917-80446185(+)$1	268	94	120	11.2563
[a[ccc"""cccmmmmccc]cccacc	chr13:28867447-28867740(+)$1	293	232	258	9.5218
gggddddcccddddllldddd]ccc]	chrX:154006934-154007183(-)$1	249	144	170	10.8086
ddddddd!!ddddmmmmdddd22ddd	chr6:99847859-99848134(-)$1	275	72	98	14.1943
[eeeee####cccmmmmccc22eeee	chr1:153902130-153902373(-)$1	243	124	150	10.0788
ddddd"""eeeeemmmmeeeee22dd	chr1:6695418-6695701(-)$1	283	221	247	11.7482
ff[bb####ddddllldddd4444bb	chr5:139939907-139940187(-)$1	280	112	138	11.8418
bggggggg[ddddmmmmddddggggg	chr12:131274316-131274565(-)$1	249	101	127	12.6829
ggggg####ddddmmmmddddggggg	chr1:213072225-213072548(+)$1	323	7	33	14.2087
ff[ccc!!ddddnnnnndddd]ccc]	chr16:75611435-75611717(+)$1	282	189	215	10.9381
cceeeee!!ddddmmmmdddd]eeee	chr8:125561961-125562259(+)$1	298	53	79	13.1465
:ggggggg[ddddllldddd]ggggg	chrX:153609534-153609815(+)$1	281	49	75	10.0280
ccbb[a[a[ddddmmmmdddd]a]ab	chr22:20098650-20098882(+)$1	232	28	54	13.2503
cc[dddd[eeeeemmmmeeeee22dd	chr13:98674368-98674641(+)$1	273	55	81	10.5836
!!dddd[ddddoooooodddd]dddd	chr7:23544557-23544805(-)$1	248	59	85	10.2417
Ddddd####ddddmmmmdddd]dddd	chr6:160177058-160177330(+)$1	272	14	40	13.9384
dddd!!ccc[ddddllldddd]ccc]	chr8:48973817-48974086(+)$1	269	4	30	11.0455
ddddbb"""ddddnnnnndddd333b	chr20:61827330-61827583(-)$1	253	146	172	11.1349
ddd[ccc!!ddddmmmmdddd]ccc]	chr3:9517969-9518193(+)$1	224	80	106	14.3563
"dddd####ddddnnnnndddd]ddd	chr6:43588202-43588466(-)$1	264	61	87	11.0890
hhhhhhhh[ddddmmmmdddd22hhh	chr15:40760183-40760445(+)$1	262	151	177	11.4332
::dddd"""ddddmmmmdddd333dd	chrX:70685459-70685747(+)$1	288	208	234	14.1556
ffff####eeeeemmmmeeeee22ff	chr2:223806656-223806927(+)$1	271	49	75	10.5014
d!!ccc!!ddddnnnnndddd]ccc]	chrX:151121848-151122159(-)$1	311	198	224	11.2630
ddd[bb"""ddddmmmmdddd>>>>>	chr7:151833471-151833723(-)$1	252	32	58	13.2309
Fgggggggaddddmmmmdddd]a444	chr22:42301910-42302167(+)$1	257	9	35	12.9282
eeeccc"""ddddmmmmdddd]ccc]	chr17:25640323-25640570(+)$1	247	198	224	15.0403
dddd!!cccddddmmmmdddd333cc	chr15:63900786-63901029(-)$1	243	38	64	14.1738
dddd$$$$$ddddmmmmdddd66666	chr18:9954578-9954872(+)$1	294	10	36	11.7543
eeeedddd[ddddmmmmdddd]dddd	chr2:150426077-150426442(-)$1	365	93	119	12.7484
dddccc"""cccmmmmccc333ccc]	chr12:56557119-56557375(-)$1	256	166	192	10.3123
eedddd"""ddddmmmmdddd333dd	chr12:123779042-123779286(-)$1	244	115	141	15.8175
c[dddd"""ddddmmmmdddd333dd	chrX:48830100-48830383(-)$1	283	197	223	16.0012
::dddd"""ddddmmmmdddd22ddd	chr1:8412565-8412861(-)$1	296	75	101	13.3689

#otherMatches

#Seq PSSM
GUGAACUUGAAAUUUGAAUUUUGUGU	chr6:17615427-17615653(-)$1	226	32	58	11.1205
UCAUCUAUUGUAACAUUUACCUGAGA	chr1:203821433-203821661(+)$1	228	148	174	12.0321
GGGUGGGUGGCACAGCAGUGCCCCCC	chr2:98272936-98273224(-)$1	288	22	48	10.5695
UUGUUUAAAUUGUAUUUGCAAUAAAC	chr12:46752184-46752510(-)$1	326	201	227	13.5057
UGUGGGUGUGAAAAACCUUUCCUAGC	chr15:34672616-34672910(-)$1	294	155	181	14.3980
UUAGAUUUGCAGUACCUACUGAAAUU	chr12:131274228-131274503(-)$1	275	39	65	12.6829
CACAUUUUUUAGCAAUAGUUGUGAAU	chr3:39137793-39138041(+)$1	248	53	79	11.6536
UUUGAAUUGAAGUUGUACUUUCUGAU	chr1:29474183-29474435(-)$1	252	191	217	10.0548
GCAGCCCUAUGGCCUUGGCUCUGGGC	chr11:61640971-61641237(-)$1	266	113	139	10.4404
UCCUCCCUGGAUCCUUAGAUCCCAGA	chr8:23429473-23429697(+)$1	224	183	209	11.5042
UUGGGCAUAAAAGAACUUUUUUAUGC	chr8:128753342-128753597(+)$1	255	17	43	9.3418
GGGCCCAUGGGCAGCUUGCUGUGGGG	chr16:88718623-88719014(-)$1	391	196	222	13.5698
AUGUGGACAGCAGGGACCUGCGCUAC	chr7:1473994-1474243(-)$1	249	181	207	12.5393
UAAGGGACUGUUCUGAAGAACCUUUC	chr6:4064891-4065297(+)$1	406	145	171	14.8606
GAUGUAUUUAUGUUGCUGCAUAAUGU	chr6:143509275-143509518(+)$1	243	201	227	11.0456
AAAGCAGUUGAAUUAUGUUAAAUGUU	chr5:179041322-179041567(-)$1	245	10	36	10.5163
GUCGAGUGAGCUGCCCCAGCCCCUCC	chrX:153671437-153671682(+)$1	245	59	85	11.7166
GUAGAGAGAGGGCAACAGCUUCCACA	chr15:93568448-93568688(+)$1	240	111	137	14.4181
CAGCAGCUACUACAGUAGUGGAAGCC	chr5:179041762-179042019(-)$1	257	78	104	11.6419
CAGCCUGGACAUCAAGUGGUGAAGUC	chr17:80445917-80446185(+)$1	268	94	120	11.2563
AGAGCUUUCUGAUGUUUUACAGCCUG	chr13:28867447-28867740(+)$1	293	232	258	9.5218
AAUGACACAUCUGUGCAAUAGAAUGA	chrX:154006934-154007183(-)$1	249	144	170	10.8086
GGUGAAACCAGAAUCUUUUUUUUUUU	chr6:99847859-99848134(-)$1	275	72	98	14.1943
GCUUAUGAGGUUCUUAUGGAGAGUGA	chr1:153902130-153902373(-)$1	243	124	150	10.0788
UGGAGGGAAGGGCUCUGGCCCUGACU	chr1:6695418-6695701(-)$1	283	221	247	11.7482
AGAGGAGGAGCCAUUGUGGCAGUGCC	chr5:139939907-139940187(-)$1	280	112	138	11.8418
UUAGAUUUGCAGUACCUACUGAAAUU	chr12:131274316-131274565(-)$1	249	101	127	12.6829
ucuguguaaucuaaacauagaacaga	chr1:213072225-213072548(+)$1	323	7	33	14.2087
AGUAUUAAAAUUAUCCAAAUUAAAUC	chr16:75611435-75611717(+)$1	282	189	215	10.9381
AGGAGGAAACGCCACCUGGUGGUCCU	chr8:125561961-125562259(+)$1	298	53	79	13.1465
GAGCUAGGUCUUUGGGGAAGUCCUGG	chrX:153609534-153609815(+)$1	281	49	75	10.0280
CGACUGGUGGCCCCUAUGGGUGGGUG	chr22:20098650-20098882(+)$1	232	28	54	13.2503
AGCGUAGAUGUGUGUUCACACAAAUU	chr13:98674368-98674641(+)$1	273	55	81	10.5836
AGUCAUGUCAGGUUUGUCUGGGGUGG	chr7:23544557-23544805(-)$1	248	59	85	10.2417
UGGGUUUAUGACUGCCAAGUUUGCCC	chr6:160177058-160177330(+)$1	272	14	40	13.9384
CACAGAUGUGUUAAUUUUUGAAGCAA	chr8:48973817-48974086(+)$1	269	4	30	11.0455
CCCGUCCCUCACUGUCCUGGUGUCCG	chr20:61827330-61827583(-)$1	253	146	172	11.1349
GUUCUAAGUGCAAUGAGUUGUGUUGA	chr3:9517969-9518193(+)$1	224	80	106	14.3563
GCCAUAUUUCCUACUCUUUAGGCAUG	chr6:43588202-43588466(-)$1	264	61	87	11.0890
AAGGGAGGAAGGACCUUUCCUCACCU	chr15:40760183-40760445(+)$1	262	151	177	11.4332
AAGGUAAAAGUCUGAAAGGAUAUAUG	chrX:70685459-70685747(+)$1	288	208	234	14.1556
UGUAACUUUUUAAAAGUUUGGAUGUA	chr2:223806656-223806927(+)$1	271	49	75	10.5014
GAUCUCACUGGAAGCUAUCCAAGAGC	chrX:151121848-151122159(-)$1	311	198	224	11.2630
GAAUGGUCCAGCACUUUUGCuuuuuu	chr7:151833471-151833723(-)$1	252	32	58	13.2309
AGCAGGGGGAGCUCCCAAGCUGCCAA	chr22:42301910-42302167(+)$1	257	9	35	12.9282
AAGCAAUACAGCAUAUCUGCUUUUGC	chr17:25640323-25640570(+)$1	247	198	224	15.0403
UGGGAAUGGUACAUUUUUGUAAAUCC	chr15:63900786-63901029(-)$1	243	38	64	14.1738
AUGAUUUAUUUAGAUUGCUAAUCCCA	chr18:9954578-9954872(+)$1	294	10	36	11.7543
GUGAUUUGGGAUUUUAAAAUUGCAAA	chr2:150426077-150426442(-)$1	365	93	119	12.7484
GGUGAAAGGUGUUUAUACAAGGUUCU	chr12:56557119-56557375(-)$1	256	166	192	10.3123
GUUGCACUAUUGAAAAAUCGAGAUUG	chr12:123779042-123779286(-)$1	244	115	141	15.8175
GUGUGUAAAGGCUAUGCAGCCAAAAU	chrX:48830100-48830383(-)$1	283	197	223	16.0012
UUGAAGCCCAACCACUCGGUUUCCUU	chr1:8412565-8412861(-)$1	296	75	101	13.3689

#DB
.(((.(..(((((....)))))..))	chr6:17615427-17615653(-)$1	1	32	58	11.1205
((((((...((((...))))...)))	chr1:203821433-203821661(+)$1	1	148	174	12.0321
))))(((.(((((....))))).)))	chr2:98272936-98273224(-)$1	1	22	48	10.5695
(((((((..((((....)))))))))	chr12:46752184-46752510(-)$1	1	201	227	13.5057
(.(((((..((((....))))...))	chr15:34672616-34672910(-)$1	1	155	181	14.3980
((((((((.((((....)))))))))	chr12:131274228-131274503(-)$1	1	39	65	12.6829
)))).(((.((((....)))).))).	chr3:39137793-39138041(+)$1	1	53	79	11.6536
(.(.(...(((((...))))).).).	chr1:29474183-29474435(-)$1	1	191	217	10.0548
(..((((...(((....)))..))))	chr11:61640971-61641237(-)$1	1	113	139	10.4404
(((((...(((((....)))))..))	chr8:23429473-23429697(+)$1	1	183	209	11.5042
.((((((((((((....)))))))))	chr8:128753342-128753597(+)$1	1	17	43	9.3418
..((((...((((...))))...)))	chr16:88718623-88719014(-)$1	1	196	222	13.5698
).((((.(.((((....)))))))))	chr7:1473994-1474243(-)$1	1	181	207	12.5393
.)))(((..((((....))))...))	chr6:4064891-4065297(+)$1	1	145	171	14.8606
(((((...(((((....)))))))))	chr6:143509275-143509518(+)$1	1	201	227	11.0456
((.((((((((......))))...))	chr5:179041322-179041567(-)$1	1	10	36	10.5163
(..(((.(.((((...)))).)))).	chrX:153671437-153671682(+)$1	1	59	85	11.7166
((((...(.((((....)))).)...	chr15:93568448-93568688(+)$1	1	111	137	14.4181
)))..(((.((((....)))).)))(	chr5:179041762-179042019(-)$1	1	78	104	11.6419
..((((((.((((....))))...))	chr17:80445917-80446185(+)$1	1	94	120	11.2563
.(.(((...(((....))).))))))	chr13:28867447-28867740(+)$1	1	232	258	9.5218
)))(((((((((((...)))).))).	chrX:154006934-154007183(-)$1	1	144	170	10.8086
(((((((..((((....))))..)))	chr6:99847859-99848134(-)$1	1	72	98	14.1943
.(((((....(((....)))..))))	chr1:153902130-153902373(-)$1	1	124	150	10.0788
)((((...(((((....)))))..))	chr1:6695418-6695701(-)$1	1	221	247	11.7482
((.((....((((...))))....))	chr5:139939907-139940187(-)$1	1	112	138	11.8418
((((((((.((((....)))))))))	chr12:131274316-131274565(-)$1	1	101	127	12.6829
(((((....((((....)))))))))	chr1:213072225-213072548(+)$1	1	7	33	14.2087
((.(((..((((.....)))).))).	chr16:75611435-75611717(+)$1	1	189	215	10.9381
(((((((..((((....)))).))))	chr8:125561961-125562259(+)$1	1	53	79	13.1465
.(((((((.((((...)))).)))))	chrX:153609534-153609815(+)$1	1	49	75	10.0280
((((.(.(.((((....)))).).))	chr22:20098650-20098882(+)$1	1	28	54	13.2503
((.((((.(((((....)))))..))	chr13:98674368-98674641(+)$1	1	55	81	10.5836
..((((.((((......)))).))))	chr7:23544557-23544805(-)$1	1	59	85	10.2417
(((((....((((....)))).))))	chr6:160177058-160177330(+)$1	1	14	40	13.9384
((((..(((.((((...)))).))).	chr8:48973817-48974086(+)$1	1	4	30	11.0455
((((((...((((.....))))...)	chr20:61827330-61827583(-)$1	1	146	172	11.1349
(((.(((..((((....)))).))).	chr3:9517969-9518193(+)$1	1	80	106	14.3563
.((((....((((.....)))).)))	chr6:43588202-43588466(-)$1	1	61	87	11.0890
((((((((.((((....))))..)))	chr15:40760183-40760445(+)$1	1	151	177	11.4332
..((((...((((....))))...))	chrX:70685459-70685747(+)$1	1	208	234	14.1556
((((....(((((....)))))..))	chr2:223806656-223806927(+)$1	1	49	75	10.5014
(..(((..((((.....)))).))).	chrX:151121848-151122159(-)$1	1	198	224	11.2630
(((.((...((((....)))).....	chr7:151833471-151833723(-)$1	1	32	58	13.2309
(((((((((((((....)))).)...	chr22:42301910-42302167(+)$1	1	9	35	12.9282
((((((...((((....)))).))).	chr17:25640323-25640570(+)$1	1	198	224	15.0403
((((..(((((((....))))...))	chr15:63900786-63901029(-)$1	1	38	64	14.1738
((((.....((((....)))).....	chr18:9954578-9954872(+)$1	1	10	36	11.7543
((((((((.((((....)))).))))	chr2:150426077-150426442(-)$1	1	93	119	12.7484
((((((...(((....)))...))).	chr12:56557119-56557375(-)$1	1	166	192	10.3123
((((((...((((....))))...))	chr12:123779042-123779286(-)$1	1	115	141	15.8175
(.((((...((((....))))...))	chrX:48830100-48830383(-)$1	1	197	223	16.0012
..((((...((((....))))..)))	chr1:8412565-8412861(-)$1	1	75	101	13.3689

#PSSM
d : 0.22	g : 0.11	c : 0.11	e : 0.11	f : 0.09	: : 0.07	[ : 0.05	b : 0.03	! : 0.03	h : 0.03	# : 0.01	] : 0.01	D : 0.01	" : 0.01	F : 0.01	
d : 0.22	g : 0.16	c : 0.11	e : 0.11	f : 0.09	! : 0.09	: : 0.07	[ : 0.05	= : 0.01	a : 0.01	h : 0.01	
d : 0.35	g : 0.16	e : 0.13	[ : 0.09	c : 0.05	f : 0.05	! : 0.05	a : 0.01	= : 0.01	b : 0.01	h : 0.01	
d : 0.37	c : 0.15	g : 0.15	e : 0.11	f : 0.05	[ : 0.05	b : 0.03	= : 0.01	: : 0.01	h : 0.01	
d : 0.30	c : 0.16	g : 0.15	e : 0.05	b : 0.05	[ : 0.03	f : 0.03	: : 0.03	! : 0.03	a : 0.01	= : 0.01	" : 0.01	h : 0.01	# : 0.01	$ : 0.01	
d : 0.24	c : 0.20	g : 0.09	" : 0.09	# : 0.09	e : 0.05	a : 0.03	f : 0.03	! : 0.03	b : 0.03	= : 0.01	h : 0.01	$ : 0.01	
" : 0.30	c : 0.13	d : 0.11	# : 0.11	g : 0.09	[ : 0.07	! : 0.05	e : 0.03	= : 0.01	f : 0.01	h : 0.01	$ : 0.01	
" : 0.30	! : 0.16	# : 0.11	c : 0.09	g : 0.07	a : 0.07	d : 0.05	[ : 0.03	= : 0.01	f : 0.01	h : 0.01	$ : 0.01	
" : 0.22	[ : 0.22	e : 0.15	! : 0.11	# : 0.09	d : 0.07	c : 0.05	= : 0.01	a : 0.01	$ : 0.01	
d : 0.71	e : 0.15	c : 0.05	" : 0.01	= : 0.01	# : 0.01	[ : 0.01	
d : 0.75	e : 0.15	c : 0.07	= : 0.01	
d : 0.71	e : 0.15	c : 0.07	o : 0.03	= : 0.01	
d : 0.67	e : 0.15	c : 0.03	o : 0.03	m : 0.03	n : 0.03	= : 0.01	
m : 0.73	l : 0.11	n : 0.07	o : 0.03	d : 0.03	
m : 0.73	l : 0.15	n : 0.07	o : 0.03	
m : 0.73	l : 0.15	n : 0.07	o : 0.03	
m : 0.69	d : 0.09	n : 0.07	o : 0.03	c : 0.03	l : 0.03	e : 0.01	
d : 0.71	e : 0.15	c : 0.07	n : 0.03	= : 0.01	
d : 0.75	e : 0.15	c : 0.07	= : 0.01	
d : 0.75	e : 0.15	c : 0.03	= : 0.01	] : 0.01	3 : 0.01	
d : 0.66	e : 0.15	3 : 0.05	2 : 0.03	] : 0.03	= : 0.01	c : 0.01	4 : 0.01	
] : 0.30	3 : 0.20	e : 0.13	g : 0.09	2 : 0.09	a : 0.03	d : 0.03	= : 0.01	c : 0.01	4 : 0.01	> : 0.01	6 : 0.01	
3 : 0.20	c : 0.20	2 : 0.15	g : 0.11	d : 0.09	a : 0.07	] : 0.03	e : 0.03	= : 0.01	4 : 0.01	> : 0.01	6 : 0.01	
c : 0.20	3 : 0.16	d : 0.16	g : 0.11	2 : 0.09	4 : 0.05	] : 0.03	e : 0.03	f : 0.01	= : 0.01	a : 0.01	h : 0.01	> : 0.01	6 : 0.01	
d : 0.28	c : 0.26	g : 0.13	a : 0.05	f : 0.05	e : 0.05	4 : 0.03	= : 0.01	b : 0.01	3 : 0.01	h : 0.01	> : 0.01	6 : 0.01	
d : 0.28	] : 0.16	g : 0.13	c : 0.11	f : 0.05	e : 0.05	b : 0.05	4 : 0.03	: : 0.01	= : 0.01	h : 0.01	> : 0.01	6 : 0.01	

#score	646.4371217358846
#seq	53
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_UTR_m2_run1.txt

#BEAR
bb####ddddmmmmdddd333bb	chr2:20646763-20647032(+)$1	269	67	90	12.8401
ddd"""ddddmmmmdddd]dddd	chr4:73984340-73984630(-)$1	290	87	110	12.9420
cc[cccddddmmmmdddd]cccc	chr2:219553331-219553586(+)$1	255	218	241	12.1568
[bb"""ddddnnnnndddd333b	chr19:10801475-10801707(+)$1	232	71	94	10.1767
!dddd[ddddmmmmdddddddd2	chr17:44249015-44249305(-)$1	290	225	248	11.2815
[dddd[ddddllldddd22dddd	chr16:87363809-87364034(-)$1	225	11	34	9.2991
[dddd[ddddmmmmdddd333dd	chr21:46189772-46190039(-)$1	267	136	159	13.2707
$$$$$eeeeemmmmeeeee333a	chr17:42270300-42270552(-)$1	252	55	78	10.7959
cccc!!ddddmmmmdddd22ccc	chr18:74155032-74155263(-)$1	231	204	227	13.5003
dddd!!ddddllldddddddd]f	chr6:32942138-32942387(+)$1	249	91	114	9.9993
:dddd[ddddmmmmdddd]dddd	chr1:169555543-169555795(-)$1	252	16	39	10.9860
ddd!!eeeeemmmmeeeee333d	chr1:1595678-1595954(-)$1	276	164	187	12.0957
[ccc!!ddddmmmmdddd]cccc	chr1:227505987-227506251(-)$1	264	32	55	13.3071
cc!!dddd[ammmmadddd22cc	chr2:32502998-32503296(+)$1	298	156	179	11.0764
fffff[ddddmmmmdddd]ffff	chr16:70696580-70696831(-)$1	251	11	34	10.9702
!!ccc[ddddmmmmddddccc]c	chr16:24834992-24835242(+)$1	250	200	223	12.2673
dccc!!ddddmmmmdddd22ccc	chr9:117073882-117074132(+)$1	250	121	144	13.4627
ddd!!eeeeemmmmeeeee22dd	chr6:159053380-159053607(+)$1	227	33	56	11.4005
ccc!!eeeeemmmmeeeeeccc]	chr7:98476087-98476350(+)$1	263	177	200	11.0864
$bb!!eeeeemmmmeeeee4444	chr20:4833777-4834068(-)$1	291	43	66	10.9601
[ccc"""cccmmmmccc333ccc	chr1:19438931-19439160(-)$1	229	85	108	10.9254
ccc!!ddddnnnnndddd333cc	chr9:117053049-117053291(+)$1	242	141	164	10.8742
ccc!!ddddnnnnndddd22ccc	chr17:7322799-7323035(+)$1	236	3	26	10.1872
f####eeeeemmmmeeeeeffff	chr17:46136911-46137170(+)$1	259	198	221	10.1158
ccc!!ddddnnnnndddd333cc	chr1:19439100-19439345(-)$1	245	75	98	10.8742
ddd[a[ddddmmmmdddda]ddd	chr4:184020529-184020807(+)$1	278	87	110	12.6720
eee"""ddddmmmmddddeeeee	chr9:117071548-117071773(+)$1	225	73	96	11.9546
]ddddeeeeemmmmeeeeeccc[	chr17:7321416-7321670(+)$1	254	161	184	9.5269
ee"""eeeeemmmmeeeeeeeee	chr19:10488955-10489204(-)$1	249	203	226	10.2406
d[a[a[ddddnnnnndddd]a]a	chr7:47316836-47317096(-)$1	260	112	135	9.5611
ddddcccddddllldddd333cc	chr1:22213812-22214053(-)$1	241	24	47	10.3741
hhhha[ddddmmmmdddd]a22h	chr16:2139594-2139815(-)$1	221	6	29	11.3367
!!ccc[ddddnnnnndddd]ccc	chr3:49050515-49050772(+)$1	257	188	211	9.6667
ffff!!ddddmmmmdddd]ffff	chr3:48700018-48700265(-)$1	247	207	230	11.6743
dddd[eeeeemmmmeeeee333d	chr14:53619733-53619992(-)$1	259	59	82	11.5493
cc[a[eeeeemmmmeeeee]a]c	chr2:54197816-54198041(-)$1	225	95	118	11.1211
dd####ddddmmmmdddd4444d	chr19:19120907-19121126(-)$1	219	178	201	13.7775
"""bb[ddddmmmmddddbb]bb	chr20:36642058-36642332(-)$1	274	72	95	10.1960
c[bb!!ddddmmmmdddd4444b	chr6:64394111-64394360(+)$1	249	8	31	12.8244
ddd"""a[bbmmmmbb]a333dd	chr3:184102773-184103093(+)$1	320	63	86	9.5847
[a[cccacccmmmmccc]a]ccc	chr16:70697687-70697940(-)$1	253	114	137	9.2103
fffff[ddddmmmmdddd]ffff	chr1:52344246-52344508(-)$1	262	97	120	10.9702
fffff[ddddmmmmddddfffff	chr2:234378606-234378864(+)$1	258	132	155	10.5531
ccc[a[ddddnnnnndddd]a]c	chr9:95992001-95992251(+)$1	250	126	149	9.9490
ff"""eeeeemmmmeeeee4444	chr3:79068242-79068506(-)$1	264	176	199	11.4561
ddd"""ddddmmmmdddd4444d	chr4:83796779-83797006(-)$1	227	77	100	13.9879
[ccc!!ddddmmmmdddd4444c	chr9:117002399-117002630(+)$1	231	85	108	13.9533
ddd!!eeeeemmmmeeeee22dd	chr15:43010577-43010813(+)$1	236	127	150	11.4005
:ccc[eeeeemmmmeeeee]ccc	chr3:184100713-184100965(+)$1	252	198	221	10.2664
!dddd[ddddmmmmdddd]dddd	chr3:50155939-50156230(+)$1	291	261	284	12.0302
dddd!!ddddllldddd22dddd	chr12:57522607-57522851(+)$1	244	203	226	9.8249
eee[ccccccmmmmccc333ccc	chr10:135234499-135234720(+)$1	221	68	91	9.6743
dddd"""cccmmmmccc22dddd	chr15:28510860-28511142(-)$1	282	83	106	9.3147
cc"""eeeeemmmmeeeeeccc]	chr17:62499449-62499719(-)$1	270	29	52	11.1123
[ccc[eeeeemmmmeeeee]ccc	chr17:80023481-80023762(-)$1	281	132	155	11.3148

#otherMatches

#Seq PSSM
CCUCAUCUGCCACCGCAGUCUGG	chr2:20646763-20647032(+)$1	269	67	90	12.8401
CAAGAAGGGGAACACUCCAUUGU	chr4:73984340-73984630(-)$1	290	87	110	12.9420
UGCUGCUGAGUCUACUCAGGCAC	chr2:219553331-219553586(+)$1	255	218	241	12.1568
AACUUUUGAGGAAUUCUUAUUUG	chr19:10801475-10801707(+)$1	232	71	94	10.1767
AGUGGUCAGACAGCUCUGCCACA	chr17:44249015-44249305(-)$1	290	225	248	11.2815
ACGCAAGGCUCCAGGCCCGUGUG	chr16:87363809-87364034(-)$1	225	11	34	9.2991
AGCACAGGCCAGGAGGCCACAGU	chr21:46189772-46190039(-)$1	267	136	159	13.2707
GGAAGAGAGGGUGGCCUCUGUGC	chr17:42270300-42270552(-)$1	252	55	78	10.7959
CGCGCGACAGAAAGCUGUGCCGC	chr18:74155032-74155263(-)$1	231	204	227	13.5003
UCUUUACAGGCUCCCUGGGGAAG	chr6:32942138-32942387(+)$1	249	91	114	9.9993
GCUGCCGUUUGCAAGAACUGCAG	chr1:169555543-169555795(-)$1	252	16	39	10.9860
UUGGCUUCUCACCUGGGAAAUAC	chr1:1595678-1595954(-)$1	276	164	187	12.0957
ugccggggccggggGGCCAGGCC	chr1:227505987-227506251(-)$1	264	32	55	13.3071
CCGCGGCCGCCUCGGGGUCUGGG	chr2:32502998-32503296(+)$1	298	156	179	11.0764
GCCGGAGGCCCUGGGGUCACCGG	chr16:70696580-70696831(-)$1	251	11	34	10.9702
UCGCCGCCUGCAGCCAGGGGCCG	chr16:24834992-24835242(+)$1	250	200	223	12.2673
AGGCUGGCCUUGGAAGGCGUGCC	chr9:117073882-117074132(+)$1	250	121	144	13.4627
AGUGCCCUGGGUAACCAGGUGGC	chr6:159053380-159053607(+)$1	227	33	56	11.4005
GUUGGCGGGCGGGCGUCCGAACG	chr7:98476087-98476350(+)$1	263	177	200	11.0864
CGGAUGCCAUGGGAGUGGCCAGG	chr20:4833777-4834068(-)$1	291	43	66	10.9601
GCCGAGGGGCUGCGGCCAUGCGG	chr1:19438931-19439160(-)$1	229	85	108	10.9254
AUUCAAGGUCAGAUACCUCUUAA	chr9:117053049-117053291(+)$1	242	141	164	10.8742
CAAAUCCAGAAUCCCUGGUCUUG	chr17:7322799-7323035(+)$1	236	3	26	10.1872
CAAUAUAUCUUCUCAGAUGGGAU	chr17:46136911-46137170(+)$1	259	198	221	10.1158
CAUUCACUGCCAGCCAGUACCGU	chr1:19439100-19439345(-)$1	245	75	98	10.8742
GCGCCGCUCGCCGGCGAGGCCGC	chr4:184020529-184020807(+)$1	278	87	110	12.6720
GCCUUAACAUGACCGUGUGGCAG	chr9:117071548-117071773(+)$1	225	73	96	11.9546
AGUGGUGUGUUCACAUACAGUGA	chr17:7321416-7321670(+)$1	254	161	184	9.5269
CUGAAGGUGCUUCUGCACUGGGC	chr19:10488955-10489204(-)$1	249	203	226	10.2406
ugggcgagcugggcgagcugggc	chr7:47316836-47317096(-)$1	260	112	135	9.5611
GGCCCCUGCCCUGUGGGCCCCAG	chr1:22213812-22214053(-)$1	241	24	47	10.3741
CAGUCGGGGUGUGGACCUGGCCA	chr16:2139594-2139815(-)$1	221	6	29	11.3367
UGGCUAUGUGUAUACCACAGGGC	chr3:49050515-49050772(+)$1	257	188	211	9.6667
aggcggccgccguggcggggCCU	chr3:48700018-48700265(-)$1	247	207	230	11.6743
CGGGAUUUGAAAGAUUAGAAACU	chr14:53619733-53619992(-)$1	259	59	82	11.5493
ggguggggggggugUCCCUGGGC	chr2:54197816-54198041(-)$1	225	95	118	11.1211
CUCAAGGGCUCCGGGGCUGGAAG	chr19:19120907-19121126(-)$1	219	178	201	13.7775
GCCUGCAGGAUGUUUCCUCAAUG	chr20:36642058-36642332(-)$1	274	72	95	10.1960
UAUCUACUGCUAAAGCAGGAGUG	chr6:64394111-64394360(+)$1	249	8	31	12.8244
GCUACCCCCUGUGAAGAGCCAAG	chr3:184102773-184103093(+)$1	320	63	86	9.5847
GCUGGCGGCCAACCGGCACAGCC	chr16:70697687-70697940(-)$1	253	114	137	9.2103
GGGGAGGGGUUCAGGCCUGUUCC	chr1:52344246-52344508(-)$1	262	97	120	10.9702
CCAGGCGGGGAGCCCCUCCCUGG	chr2:234378606-234378864(+)$1	258	132	155	10.5531
AUGACCUCAGGGACGCUGAAGAC	chr9:95992001-95992251(+)$1	250	126	149	9.9490
CGGGGCUGGGGGCGCCCAGAAGA	chr3:79068242-79068506(-)$1	264	176	199	11.4561
GGGAUCUAAAUAAUUUUGCAACC	chr4:83796779-83797006(-)$1	227	77	100	13.9879
UCUGCUUCCCCUCAGGGAUUCCC	chr9:117002399-117002630(+)$1	231	85	108	13.9533
CCAAAGAGGUGCCUGCCUUGGUG	chr15:43010577-43010813(+)$1	236	127	150	11.4005
CGCAUCAGUGGACACAUUGCUGC	chr3:184100713-184100965(+)$1	252	198	221	10.2664
CCUCACAUUCCUAGGGGUUUGAG	chr3:50155939-50156230(+)$1	291	261	284	12.0302
GACGGUGAGUGAGAUUCCGCGUC	chr12:57522607-57522851(+)$1	244	203	226	9.8249
GUGCAGAAGCUCCGGCUGCCUCU	chr10:135234499-135234720(+)$1	221	68	91	9.6743
GUGCACAUCGCUUGCGGGAGCAC	chr15:28510860-28511142(-)$1	282	83	106	9.3147
GUGUUUGGUGCUGGCACCAACUC	chr17:62499449-62499719(-)$1	270	29	52	11.1123
cgcggugcgggcguucgcggcgc	chr17:80023481-80023762(-)$1	281	132	155	11.3148

#DB
((....((((....))))...))	chr2:20646763-20647032(+)$1	1	67	90	12.8401
(((...((((....)))).))))	chr4:73984340-73984630(-)$1	1	87	110	12.9420
((.(((((((....)))).))))	chr2:219553331-219553586(+)$1	1	218	241	12.1568
.((...((((.....))))...)	chr19:10801475-10801707(+)$1	1	71	94	10.1767
.((((.((((....)))))))).	chr17:44249015-44249305(-)$1	1	225	248	11.2815
.((((.((((...))))..))))	chr16:87363809-87364034(-)$1	1	11	34	9.2991
.((((.((((....))))...))	chr21:46189772-46190039(-)$1	1	136	159	13.2707
.....(((((....)))))...)	chr17:42270300-42270552(-)$1	1	55	78	10.7959
)(((..((((....))))..)))	chr18:74155032-74155263(-)$1	1	204	227	13.5003
((((..((((...)))))))).)	chr6:32942138-32942387(+)$1	1	91	114	9.9993
.((((.((((....)))).))))	chr1:169555543-169555795(-)$1	1	16	39	10.9860
(((..(((((....)))))...)	chr1:1595678-1595954(-)$1	1	164	187	12.0957
.(((..((((....)))).))))	chr1:227505987-227506251(-)$1	1	32	55	13.3071
((..((((.(....)))))..))	chr2:32502998-32503296(+)$1	1	156	179	11.0764
(((((.((((....)))).))))	chr16:70696580-70696831(-)$1	1	11	34	10.9702
..(((.((((....))))))).)	chr16:24834992-24835242(+)$1	1	200	223	12.2673
)(((..((((....))))..)))	chr9:117073882-117074132(+)$1	1	121	144	13.4627
(((..(((((....)))))..))	chr6:159053380-159053607(+)$1	1	33	56	11.4005
(((..(((((....)))))))).	chr7:98476087-98476350(+)$1	1	177	200	11.0864
.((..(((((....)))))....	chr20:4833777-4834068(-)$1	1	43	66	10.9601
.(((...(((....)))...)))	chr1:19438931-19439160(-)$1	1	85	108	10.9254
(((..((((.....))))...))	chr9:117053049-117053291(+)$1	1	141	164	10.8742
(((..((((.....))))..)))	chr17:7322799-7323035(+)$1	1	3	26	10.1872
(....(((((....)))))))))	chr17:46136911-46137170(+)$1	1	198	221	10.1158
(((..((((.....))))...))	chr1:19439100-19439345(-)$1	1	75	98	10.8742
(((.(.((((....))))).)))	chr4:184020529-184020807(+)$1	1	87	110	12.6720
(((...((((....)))))))))	chr9:117071548-117071773(+)$1	1	73	96	11.9546
.))))(((((....)))))(((.	chr17:7321416-7321670(+)$1	1	161	184	9.5269
((...(((((....)))))))))	chr19:10488955-10489204(-)$1	1	203	226	10.2406
(.(.(.((((.....)))).).)	chr7:47316836-47317096(-)$1	1	112	135	9.5611
(((((((((((...))))...))	chr1:22213812-22214053(-)$1	1	24	47	10.3741
(((((.((((....)))).)..)	chr16:2139594-2139815(-)$1	1	6	29	11.3367
..(((.((((.....)))).)))	chr3:49050515-49050772(+)$1	1	188	211	9.6667
((((..((((....)))).))))	chr3:48700018-48700265(-)$1	1	207	230	11.6743
((((.(((((....)))))...)	chr14:53619733-53619992(-)$1	1	59	82	11.5493
((.(.(((((....))))).).)	chr2:54197816-54198041(-)$1	1	95	118	11.1211
((....((((....))))....)	chr19:19120907-19121126(-)$1	1	178	201	13.7775
...((.((((....)))))).))	chr20:36642058-36642332(-)$1	1	72	95	10.1960
(.((..((((....))))....)	chr6:64394111-64394360(+)$1	1	8	31	12.8244
(((...(.((....)).)...))	chr3:184102773-184103093(+)$1	1	63	86	9.5847
.(.(((((((....))).).)))	chr16:70697687-70697940(-)$1	1	114	137	9.2103
(((((.((((....)))).))))	chr1:52344246-52344508(-)$1	1	97	120	10.9702
(((((.((((....)))))))))	chr2:234378606-234378864(+)$1	1	132	155	10.5531
(((.(.((((.....)))).).)	chr9:95992001-95992251(+)$1	1	126	149	9.9490
((...(((((....)))))....	chr3:79068242-79068506(-)$1	1	176	199	11.4561
(((...((((....))))....)	chr4:83796779-83797006(-)$1	1	77	100	13.9879
.(((..((((....))))....)	chr9:117002399-117002630(+)$1	1	85	108	13.9533
(((..(((((....)))))..))	chr15:43010577-43010813(+)$1	1	127	150	11.4005
.(((.(((((....))))).)))	chr3:184100713-184100965(+)$1	1	198	221	10.2664
.((((.((((....)))).))))	chr3:50155939-50156230(+)$1	1	261	284	12.0302
((((..((((...))))..))))	chr12:57522607-57522851(+)$1	1	203	226	9.8249
(((.((((((....)))...)))	chr10:135234499-135234720(+)$1	1	68	91	9.6743
((((...(((....)))..))))	chr15:28510860-28511142(-)$1	1	83	106	9.3147
((...(((((....)))))))).	chr17:62499449-62499719(-)$1	1	29	52	11.1123
.(((.(((((....))))).)))	chr17:80023481-80023762(-)$1	1	132	155	11.3148

#PSSM
d : 0.27	c : 0.20	[ : 0.14	f : 0.10	! : 0.07	e : 0.05	$ : 0.03	: : 0.03	b : 0.01	] : 0.01	h : 0.01	" : 0.01	
d : 0.34	c : 0.29	f : 0.09	b : 0.05	e : 0.05	! : 0.03	[ : 0.03	$ : 0.01	# : 0.01	h : 0.01	" : 0.01	a : 0.01	
d : 0.32	c : 0.25	f : 0.07	" : 0.07	# : 0.05	[ : 0.05	b : 0.05	e : 0.03	$ : 0.01	! : 0.01	a : 0.01	h : 0.01	
c : 0.20	d : 0.20	! : 0.16	" : 0.14	f : 0.07	[ : 0.07	# : 0.05	b : 0.03	$ : 0.01	h : 0.01	a : 0.01	
! : 0.29	" : 0.18	d : 0.12	c : 0.10	a : 0.07	[ : 0.07	# : 0.05	f : 0.05	$ : 0.01	b : 0.01	
[ : 0.27	e : 0.27	! : 0.14	" : 0.12	c : 0.07	d : 0.07	# : 0.03	
d : 0.61	e : 0.27	" : 0.03	c : 0.03	a : 0.03	
d : 0.63	e : 0.27	c : 0.07	[ : 0.01	
d : 0.61	e : 0.27	c : 0.07	[ : 0.01	b : 0.01	
d : 0.56	e : 0.27	c : 0.07	n : 0.05	a : 0.01	b : 0.01	
m : 0.80	n : 0.12	l : 0.05	d : 0.01	
m : 0.80	n : 0.12	l : 0.07	
m : 0.80	n : 0.12	l : 0.07	
m : 0.80	n : 0.12	d : 0.05	l : 0.01	
d : 0.54	e : 0.27	n : 0.07	c : 0.07	a : 0.01	b : 0.01	
d : 0.63	e : 0.27	c : 0.07	b : 0.01	
d : 0.63	e : 0.27	c : 0.07	] : 0.01	
d : 0.60	e : 0.27	2 : 0.05	3 : 0.03	a : 0.01	] : 0.01	
e : 0.29	] : 0.16	3 : 0.14	d : 0.12	2 : 0.10	4 : 0.07	a : 0.03	c : 0.01	b : 0.01	f : 0.01	
3 : 0.21	d : 0.14	] : 0.14	c : 0.10	2 : 0.10	4 : 0.10	f : 0.09	e : 0.03	a : 0.01	b : 0.01	
c : 0.27	3 : 0.18	d : 0.16	4 : 0.10	f : 0.09	2 : 0.07	a : 0.05	e : 0.03	] : 0.01	
c : 0.32	d : 0.21	4 : 0.10	] : 0.09	f : 0.09	3 : 0.07	b : 0.03	e : 0.03	2 : 0.01	
c : 0.34	d : 0.27	f : 0.10	b : 0.07	a : 0.03	] : 0.03	4 : 0.03	e : 0.03	2 : 0.01	[ : 0.01	h : 0.01	

#score	617.9323131527532
#seq	55
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_CDS_m2_run2.txt

#BEAR
fffffrrrrrrrrrfff	chr11:618794-619008(-)$1	214	113	130	9.0718
!ffffffnnnnnfffff	chr4:39459954-39460161(-)$1	207	98	115	9.2110
[bbcccooooooccc88	chr20:62597556-62597772(-)$1	216	63	80	8.3630
fffffrrrrrrrrrfff	chr11:618785-618994(-)$1	209	99	116	9.0718
dd[cccooooooccc]d	chr20:62597553-62597756(-)$1	203	20	37	8.8286
ffffffoooooofffff	chr3:23959240-23959465(+)$1	225	189	206	11.8266
ffffffoooooofffff	chr11:75115118-75115352(+)$1	234	84	101	11.8266
bffffffnnnnnfffff	chr11:17097033-17097271(-)$1	238	130	147	9.1114
ggggggooooooggggg	chr1:4771981-4772204(+)$1	223	111	128	9.2700
beeeeeooooooeeeee	chr11:9481795-9482048(-)$1	253	204	221	8.3577

#otherMatches

#Seq PSSM
UGGGAACCAGCACCUCC	chr11:618794-619008(-)$1	214	113	130	9.0718
CAGAAUGAAGACUAUUC	chr4:39459954-39460161(-)$1	207	98	115	9.2110
CAAACCCAUUACGGUAA	chr20:62597556-62597772(-)$1	216	63	80	8.3630
UGGGAACCAGCACCUCC	chr11:618785-618994(-)$1	209	99	116	9.0718
GCCGGUCACCAAACCCG	chr20:62597553-62597756(-)$1	203	20	37	8.8286
GCUGGCAGUACCGCCAG	chr3:23959240-23959465(+)$1	225	189	206	11.8266
GUUAACUACUACGUUGA	chr11:75115118-75115352(+)$1	234	84	101	11.8266
GCACAAGUACGUUUUGU	chr11:17097033-17097271(-)$1	238	130	147	9.1114
cggucgccgccccggcc	chr1:4771981-4772204(+)$1	223	111	128	9.2700
CUGCUGAAAUUCCGGCG	chr11:9481795-9482048(-)$1	253	204	221	8.3577

#DB
(((((.........)))	chr11:618794-619008(-)$1	1	113	130	9.0718
.((((((.....)))))	chr4:39459954-39460161(-)$1	1	98	115	9.2110
.(((((......)))..	chr20:62597556-62597772(-)$1	1	63	80	8.3630
(((((.........)))	chr11:618785-618994(-)$1	1	99	116	9.0718
((.(((......))).)	chr20:62597553-62597756(-)$1	1	20	37	8.8286
((((((......)))))	chr3:23959240-23959465(+)$1	1	189	206	11.8266
((((((......)))))	chr11:75115118-75115352(+)$1	1	84	101	11.8266
(((((((.....)))))	chr11:17097033-17097271(-)$1	1	130	147	9.1114
((((((......)))))	chr1:4771981-4772204(+)$1	1	111	128	9.2700
)(((((......)))))	chr11:9481795-9482048(-)$1	1	204	221	8.3577

#PSSM
f : 0.40	b : 0.20	! : 0.10	[ : 0.10	d : 0.10	g : 0.10	
f : 0.60	b : 0.10	d : 0.10	g : 0.10	e : 0.10	
f : 0.60	b : 0.10	[ : 0.10	g : 0.10	e : 0.10	
f : 0.60	c : 0.20	g : 0.10	e : 0.10	
f : 0.60	c : 0.20	g : 0.10	e : 0.10	
f : 0.40	r : 0.20	c : 0.20	g : 0.10	e : 0.10	
o : 0.60	r : 0.20	f : 0.20	
o : 0.60	r : 0.20	n : 0.20	
o : 0.60	r : 0.20	n : 0.20	
o : 0.60	r : 0.20	n : 0.20	
o : 0.60	r : 0.20	n : 0.20	
o : 0.60	r : 0.20	n : 0.20	
f : 0.40	r : 0.20	c : 0.20	g : 0.10	e : 0.10	
f : 0.40	r : 0.20	c : 0.20	g : 0.10	e : 0.10	
f : 0.60	c : 0.20	g : 0.10	e : 0.10	
f : 0.60	8 : 0.10	] : 0.10	g : 0.10	e : 0.10	
f : 0.60	8 : 0.10	d : 0.10	g : 0.10	e : 0.10	

#score	94.93892562607
#seq	10
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_UTR_m3_run1.txt

#BEAR
fffffa[eeeee"""bbmmmmbb333eeeee]a66	chr11:3013160-3013478(-)$1	318	110	145	10.9197
eeeee!!dddd!!ddddmmmmdddd]ddddeeeee	chr12:133404788-133405045(-)$1	257	179	214	11.7324
'ccc[dddd[ccc[bboooooobb]cccddddccc	chr20:34252332-34252584(-)$1	252	102	137	10.5306
!cccccc[a[eeeeellleeeeea]ccc]ccc]ee	chr9:117052426-117052697(+)$1	271	227	262	8.3692
cdddd[ffffffabbbbmmmmbb]bb]a]ffffff	chr2:223726303-223726582(+)$1	279	37	72	9.5483
eeee"""a[ccc[ddddllldddd]ccc]a333ee	chr7:73007579-73007833(-)$1	254	209	244	12.8824
eeggggggg!!bb[a[bbmmmmbb]a]bb22gggg	chr11:129148908-129149245(-)$1	337	84	119	10.0244
ddd"""ccc[ddddoooooodddd]ccc22dddd:	chr1:20234805-20235177(+)$1	372	274	309	8.5659
!eeeee!!eeeee!!bbmmmmbb]eeeee22eeee	chr16:1359636-1359911(+)$1	275	181	216	13.3024
ffffff"""bb"""cccnnnnnccc4444bb22ff	chr9:117053000-117053254(+)$1	254	2	37	9.1019
gg[aa!!dddd[cccooooooccc]dddd22a]a]	chr10:1094606-1094927(-)$1	321	220	255	12.2861
ggggggg[bb[ffffffmmmmffffff]bb333gg	chr5:73935791-73936095(-)$1	304	159	194	10.1636
"eeeee!!ccc"""cccmmmmcccccc22eeeee]	chr14:39736575-39736846(+)$1	271	86	121	13.4791
[bb[cccccc[bb[cccmmmmccc]bbccc]cccb	chr20:34252561-34252786(-)$1	225	20	55	10.4964
ff!!cccdddd"""cccmmmmcccdddd]ccc333	chr16:1361765-1362030(+)$1	265	207	242	11.8225
eeeee[bbffffff[bbmmmmbb]ffffff22bb]	chr2:242757627-242757937(+)$1	310	98	133	10.7085
[eeeee!!eeeee!!bbmmmmbb]eeeee22eeee	chr16:1359770-1360039(+)$1	269	47	82	13.2991
eeeee[a[a[ccc[cccmmmmccc]ccc]a]a]ee	chrX:41193667-41193974(+)$1	307	112	147	14.9222
!eeeee[dddd"""bboooooobb4444ddddeee	chr7:100424769-100425119(-)$1	350	231	266	12.2701
ggccc[ccc[cccbboooooobb]ccc22ccc]cc	chr6:89791452-89791724(+)$1	272	110	145	11.4236
eeee"""a[ccc[ddddllldddd]ccc]a333ee	chr7:73007524-73007779(-)$1	255	155	190	12.8824
eeeee[dddd!!cccooooooccc22dddd]eeee	chr12:6875621-6875864(+)$1	243	134	169	12.2125
ee[eeeee"""ccc[bbmmmmbb]ccceeeee22e	chr5:73935919-73936194(-)$1	275	17	52	12.3745
eee[eeeee[ccc[ddddllldddd]ccc22eeee	chr14:39736370-39736642(+)$1	272	153	188	11.4532
#a[dddd!!ffffff[ammmma]ffffff]dddd]	chr1:27022434-27022784(+)$1	350	65	100	9.9081
fffff!!bb[ggggggglllgggggggbb4444ff	chr20:34252636-34252910(-)$1	274	179	214	10.1064
HHHeeeee"""ffffffmmmmffffff333eeeee	chr8:13133750-13134023(-)$1	273	9	44	9.4503
ffffffeeeee[a[aooooooa]a]eeeee]ffff	chr9:117026537-117026778(+)$1	241	133	168	11.0321
]dddd:ccc[ccc!!bblllbb]ccc]ccceeeee	chr9:117063250-117063506(+)$1	256	113	148	10.1107

#otherMatches

#Seq PSSM
CCUCggggcgguggggcaggggcggggccgcguuc	chr11:3013160-3013478(-)$1	318	110	145	10.9197
UGGGUCUGGGUCACUGCCCCCGCGGAGCCCACCUA	chr12:133404788-133405045(-)$1	257	179	214	11.7324
GAUGAGCCUGCGUACCGAAGUGGGGACGAGGCCAU	chr20:34252332-34252584(-)$1	252	102	137	10.5306
ACCAGGUGUAGGGGAACUUCCCCAGGCCAUGGGCC	chr9:117052426-117052697(+)$1	271	227	262	8.3692
GCUCUGCCGCGGCCCCAGCAGUGCGGUGUCCGUGG	chr2:223726303-223726582(+)$1	279	37	72	9.5483
CACAGCAGGGCAGGCAUCAugugugugugugugug	chr7:73007579-73007833(-)$1	254	209	244	12.8824
gcggcgcucggcggcggcggcggcggGCGGAGGGC	chr11:129148908-129149245(-)$1	337	84	119	10.0244
GACGAACUCCUGGGGUUUUGCCUAAGAGGAGUCUA	chr1:20234805-20235177(+)$1	372	274	309	8.5659
cgggccgAGGCCUCUACUCCUGUUgggcccgggcc	chr16:1359636-1359911(+)$1	275	181	216	13.3024
CCAGGGUUUGCCCAGGCGUUGAGCCAUCUGCUUCC	chr9:117053000-117053254(+)$1	254	2	37	9.1019
CCGUGAGGUCUCGGCGCGGAGGCCUGGACAGCUGG	chr10:1094606-1094927(-)$1	321	220	255	12.2861
GCAUCGCCGGAGAGGUCGACCGGCCUCCCCUCCGC	chr5:73935791-73936095(-)$1	304	159	194	10.1636
CUAUGGAGGAGCCCGGGGUUACCCCUCAACCGUAU	chr14:39736575-39736846(+)$1	271	86	121	13.4791
GGCUGGGGCUGUCGGCCGCGGGGCGGAGGCACUCG	chr20:34252561-34252786(-)$1	225	20	55	10.4964
AGACAGCCUUGAAACCGUGGUUGGCGGGCGCUCCA	chr16:1361765-1362030(+)$1	265	207	242	11.8225
GCCCGAGACUGCCUGGGGCUGCCAGGGCAGCAUCG	chr2:242757627-242757937(+)$1	310	98	133	10.7085
cgggccgAGGCCUCUACUCCUGUUgggcccgggcc	chr16:1359770-1360039(+)$1	269	47	82	13.2991
CUUUUGUGUGUGCGUGCGCAGGCGGGCGGAGGGGG	chrX:41193667-41193974(+)$1	307	112	147	14.9222
ccggcgcggccACUGCCAGCACGCUccgggcccgc	chr7:100424769-100425119(-)$1	350	231	266	12.2701
CGGGUGGGGGCAGCUGGGGAAGGACUGGGCCCGGC	chr6:89791452-89791724(+)$1	272	110	145	11.4236
CACAGCAGGGCAGGCAUCAugugugugugugugug	chr7:73007524-73007779(-)$1	255	155	190	12.8824
gccgccgccgccaccgcGCCAGGUUCCGGCCGCGG	chr12:6875621-6875864(+)$1	243	134	169	12.2125
ACCGUCGCUAGAACUCAGUUGUGCGUUGCGGCCAG	chr5:73935919-73936194(-)$1	275	17	52	12.3745
GCAGCCGGCUCCGCAGUGGUCCACUCCGGUUGCCG	chr14:39736370-39736642(+)$1	272	153	188	11.4532
ucccuccUCCUUUCUCCGGCAGCAGAAAGCGGAGA	chr1:27022434-27022784(+)$1	350	65	100	9.9081
CGCGGGGGGUAAUUCGGGGUCUGGGUUCUGGUGCC	chr20:34252636-34252910(-)$1	274	179	214	10.1064
GCCUCCUGAAGGCAGGCGACAGCCUGCGGCCGGGA	chr8:13133750-13134023(-)$1	273	9	44	9.4503
GGGUCCAGGGGCCUGAAGGUACCGACCCCUAGGAC	chr9:117026537-117026778(+)$1	241	133	168	11.0321
AUCGUCGGGCCCCUCGGAAUCCUGGGACCUUCGGG	chr9:117063250-117063506(+)$1	256	113	148	10.1107

#DB
((((((.(((((...((....))...))))).)..	chr11:3013160-3013478(-)$1	1	110	145	10.9197
(((((..((((..((((....)))).)))))))))	chr12:133404788-133405045(-)$1	1	179	214	11.7324
.(((.((((.(((.((......)).))))))))))	chr20:34252332-34252584(-)$1	1	102	137	10.5306
.((((((.(.(((((...)))))).))).))).))	chr9:117052426-117052697(+)$1	1	227	262	8.3692
(((((.(((((((((((....)).)).).))))))	chr2:223726303-223726582(+)$1	1	37	72	9.5483
((((...(.(((.((((...)))).))).)...))	chr7:73007579-73007833(-)$1	1	209	244	12.8824
(((((((((..((.(.((....)).).))..))))	chr11:129148908-129149245(-)$1	1	84	119	10.0244
(((...(((.((((......)))).)))..)))).	chr1:20234805-20235177(+)$1	1	274	309	8.5659
.(((((..(((((..((....)).)))))..))))	chr16:1359636-1359911(+)$1	1	181	216	13.3024
((((((...((...(((.....)))....))..))	chr9:117053000-117053254(+)$1	1	2	37	9.1019
((.((..((((.(((......))).))))..).).	chr10:1094606-1094927(-)$1	1	220	255	12.2861
(((((((.((.((((((....)))))).))...))	chr5:73935791-73936095(-)$1	1	159	194	10.1636
.(((((..(((...(((....))))))..))))).	chr14:39736575-39736846(+)$1	1	86	121	13.4791
.((.((((((.((.(((....))).))))).))))	chr20:34252561-34252786(-)$1	1	20	55	10.4964
((..(((((((...(((....))))))).)))...	chr16:1361765-1362030(+)$1	1	207	242	11.8225
(((((.((((((((.((....)).))))))..)).	chr2:242757627-242757937(+)$1	1	98	133	10.7085
.(((((..(((((..((....)).)))))..))))	chr16:1359770-1360039(+)$1	1	47	82	13.2991
(((((.(.(.(((.(((....))).))).).).))	chrX:41193667-41193974(+)$1	1	112	147	14.9222
.(((((.((((...((......))....)))))))	chr7:100424769-100425119(-)$1	1	231	266	12.2701
(((((.(((.(((((......)).)))..))).))	chr6:89791452-89791724(+)$1	1	110	145	11.4236
((((...(.(((.((((...)))).))).)...))	chr7:73007524-73007779(-)$1	1	155	190	12.8824
(((((.((((..(((......)))..)))).))))	chr12:6875621-6875864(+)$1	1	134	169	12.2125
((.(((((...(((.((....)).))))))))..)	chr5:73935919-73936194(-)$1	1	17	52	12.3745
(((.(((((.(((.((((...)))).)))..))))	chr14:39736370-39736642(+)$1	1	153	188	11.4532
.(.((((..((((((.(....).)))))).)))).	chr1:27022434-27022784(+)$1	1	65	100	9.9081
(((((..((.(((((((...)))))))))....))	chr20:34252636-34252910(-)$1	1	179	214	10.1064
((((((((...((((((....))))))...)))))	chr8:13133750-13134023(-)$1	1	9	44	9.4503
(((((((((((.(.(......).).))))).))))	chr9:117026537-117026778(+)$1	1	133	168	11.0321
.)))).(((.(((..((...)).))).)))(((((	chr9:117063250-117063506(+)$1	1	113	148	10.1107

#PSSM
e : 0.31	f : 0.17	! : 0.10	g : 0.10	[ : 0.06	' : 0.03	c : 0.03	d : 0.03	" : 0.03	# : 0.03	H : 0.03	] : 0.03	
e : 0.44	f : 0.17	d : 0.10	g : 0.10	c : 0.06	b : 0.03	a : 0.03	H : 0.03	
e : 0.37	f : 0.13	c : 0.10	d : 0.10	[ : 0.10	g : 0.06	b : 0.03	! : 0.03	H : 0.03	
e : 0.41	f : 0.13	c : 0.10	d : 0.10	g : 0.06	[ : 0.06	" : 0.03	a : 0.03	! : 0.03	
e : 0.37	f : 0.13	c : 0.13	d : 0.10	" : 0.10	g : 0.06	[ : 0.03	a : 0.03	
e : 0.24	[ : 0.17	! : 0.10	c : 0.10	" : 0.10	d : 0.06	g : 0.06	f : 0.06	a : 0.03	: : 0.03	
! : 0.20	c : 0.20	e : 0.13	d : 0.10	" : 0.10	[ : 0.06	g : 0.06	f : 0.03	b : 0.03	a : 0.03	
d : 0.20	e : 0.17	c : 0.13	! : 0.13	[ : 0.10	a : 0.06	b : 0.06	f : 0.03	g : 0.03	" : 0.03	
d : 0.20	e : 0.17	c : 0.17	" : 0.10	a : 0.06	f : 0.06	[ : 0.06	b : 0.06	g : 0.03	! : 0.03	
[ : 0.27	d : 0.17	e : 0.13	c : 0.13	f : 0.10	b : 0.06	" : 0.06	! : 0.03	
c : 0.27	e : 0.17	d : 0.17	f : 0.10	! : 0.06	[ : 0.06	" : 0.06	b : 0.03	g : 0.03	
c : 0.27	f : 0.17	e : 0.13	" : 0.13	! : 0.06	b : 0.06	[ : 0.06	d : 0.03	g : 0.03	
c : 0.27	" : 0.17	f : 0.13	e : 0.10	a : 0.06	[ : 0.06	b : 0.06	! : 0.03	d : 0.03	g : 0.03	
[ : 0.20	" : 0.17	d : 0.13	f : 0.13	! : 0.10	c : 0.10	b : 0.06	e : 0.03	g : 0.03	
c : 0.24	d : 0.13	b : 0.13	! : 0.10	f : 0.10	a : 0.06	[ : 0.06	" : 0.03	e : 0.03	o : 0.03	g : 0.03	
b : 0.31	o : 0.17	c : 0.17	d : 0.13	[ : 0.06	f : 0.06	l : 0.03	g : 0.03	
b : 0.27	o : 0.24	c : 0.17	d : 0.13	f : 0.06	l : 0.03	a : 0.03	g : 0.03	
m : 0.48	o : 0.24	l : 0.17	b : 0.03	n : 0.03	d : 0.03	
m : 0.51	o : 0.24	l : 0.17	e : 0.03	n : 0.03	
m : 0.51	o : 0.24	l : 0.17	e : 0.03	n : 0.03	
m : 0.51	o : 0.20	d : 0.10	e : 0.03	n : 0.03	l : 0.03	g : 0.03	b : 0.03	
b : 0.27	c : 0.20	d : 0.17	o : 0.06	f : 0.06	a : 0.06	e : 0.03	m : 0.03	n : 0.03	g : 0.03	
b : 0.34	c : 0.24	d : 0.17	] : 0.10	f : 0.06	e : 0.03	g : 0.03	
c : 0.27	] : 0.20	d : 0.17	b : 0.10	f : 0.10	a : 0.06	3 : 0.03	g : 0.03	
] : 0.34	c : 0.17	f : 0.13	d : 0.10	e : 0.06	3 : 0.03	b : 0.03	4 : 0.03	2 : 0.03	g : 0.03	
c : 0.34	f : 0.13	e : 0.10	] : 0.06	b : 0.06	4 : 0.06	d : 0.06	3 : 0.03	a : 0.03	2 : 0.03	g : 0.03	
c : 0.34	e : 0.13	d : 0.13	f : 0.13	] : 0.10	4 : 0.06	b : 0.03	g : 0.03	
c : 0.31	e : 0.17	d : 0.13	b : 0.06	4 : 0.06	2 : 0.06	f : 0.06	a : 0.03	] : 0.03	3 : 0.03	
] : 0.20	e : 0.17	d : 0.17	b : 0.10	2 : 0.10	c : 0.10	f : 0.06	4 : 0.03	3 : 0.03	
2 : 0.20	c : 0.17	e : 0.13	d : 0.13	a : 0.10	f : 0.06	b : 0.06	] : 0.03	4 : 0.03	3 : 0.03	
e : 0.20	2 : 0.20	d : 0.13	] : 0.13	c : 0.10	3 : 0.10	f : 0.03	b : 0.03	4 : 0.03	
e : 0.31	d : 0.13	c : 0.13	3 : 0.10	f : 0.06	2 : 0.06	a : 0.06	] : 0.03	g : 0.03	4 : 0.03	
e : 0.31	] : 0.13	3 : 0.13	c : 0.06	f : 0.06	d : 0.06	2 : 0.06	a : 0.03	g : 0.03	b : 0.03	4 : 0.03	
e : 0.44	f : 0.13	c : 0.10	g : 0.06	d : 0.06	6 : 0.03	a : 0.03	3 : 0.03	b : 0.03	2 : 0.03	
e : 0.44	f : 0.13	] : 0.13	c : 0.06	g : 0.06	6 : 0.03	: : 0.03	b : 0.03	3 : 0.03	

#score	325.38009483035177
#seq	29
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_transcript_m1_run2.txt

#BEAR
ccc!!gggggggccc[annnnna]ccc]ggggggg22ccc	chr5:154135174-154135469(+)$1	295	36	76	12.9692
============"""cccmmmmccc4444===========	chr2:10538749-10539095(+)$1	346	56	96	20.3550
=$$$$$ccc[ccc"""bbmmmmbb333ccc]ccc22====	chr16:641100-641348(+)$1	248	71	111	15.8510
=========="""ffffffmmmmffffff==========]	chr3:128214501-128214774(+)$1	273	190	230	14.5268
a[===========!!cccnnnnnccc===========]aE	chr22:50037570-50037846(-)$1	276	81	121	15.7929
[ccc[eeeee[a[a[ccclllccc]a]a]eeeeecccddd	chr7:156931810-156932053(+)$1	243	33	73	14.4146
cc"""eeeee!!ffffffmmmmffffff]eeeee333ccc	chr19:2270068-2270303(+)$1	235	155	195	13.1281
c[ggggggg!!ccc[cccmmmmccc]ccc22gggggggcc	chr2:47402778-47403059(-)$1	281	173	213	16.7587
"ccc!!ccc[eeeee[ccclllccc]eeeee]ccc22ccc	chr22:49977827-49978077(-)$1	250	38	78	13.8655
!ccc===============oooooo===============	chr9:96433091-96433361(+)$1	270	162	202	15.8602
==========####ccc[aannnnna]a]ccc]=======	chrX:153686584-153686856(+)$1	272	154	194	14.1306
eeee!!===========oooooo===========333eee	chr2:149639254-149639498(-)$1	244	180	220	15.8157
eeeeeccc"""ccc[cccnnnnnccc]ccc22ccc]eeee	chr17:43526472-43526737(-)$1	265	115	155	13.4413
::ccc[============mmmm============]ccc::	chr16:89980254-89980515(+)$1	261	216	256	12.9839
dd[a[ccc[ccc[ccc[ammmma]ccccccccc]a]dddd	chr21:44395291-44395544(+)$1	253	114	154	14.7756
:eeeee!!ffffff[cccmmmmccc22ffffff4444eee	chr19:34882747-34883039(+)$1	292	145	185	13.5502
""ccc!!ffffff"""bbmmmmbb22ffffff22ccc]ff	chr1:3655585-3655827(-)$1	242	176	216	13.0178
ddddhhhhhhhh"""ccclllccc333hhhhhhhh333dd	chr7:156931672-156931985(+)$1	313	196	236	13.2248
f####ccc$$$$$a[ccclllccc]a22cccffffff]ff	chr8:1792426-1792661(+)$1	235	89	129	13.8846
===!!eeeee[ddddoooooodddd333eeeee]======	chrM:12684-12901(+)$1	217	82	122	12.1246
[ccc$$$$$ccc!!ddddmmmmdddd4444ccc4444ccc	chr19:34874507-34874826(+)$1	319	173	213	14.6653
hhh"""eeeee!!bbcccmmmmccc]bbeeeee333hhhh	chr12:112036075-112036354(-)$1	279	55	95	14.3827
bbb!!ccc[bb####cccmmmmcccbb]ccc22bb4444b	chr5:652963-653201(+)$1	238	171	211	15.0367
"ccc####cccccc[cccmmmmccc]ccc]ccc4444ccc	chr15:89878264-89878480(+)$1	216	156	196	17.4102
gggggg!!ccc"""eeeeeooooooeeeee22ccc]gggg	chr2:216297948-216298206(-)$1	258	168	208	12.3513
[eeeee!!ccc####cccmmmmccc4444ccc]eeeee]b	chrM:2530-2733(+)$1	203	9	49	16.7237
"eeeee[a[a[a[a[cccmmmmccc]a]a]a]a]eeeee7	chr15:40342747-40343024(+)$1	277	170	210	15.7004
iiiiiiiii[dddd!!bbmmmmbb333dddd]iiiiiiii	chr20:35486239-35486452(-)$1	213	8	48	15.0780
ggg"""ccc[a!!a[cccooooooccc]a]a]ccc22ggg	chr22:49992244-49992481(-)$1	237	44	84	16.2611
c!!bb!!ccc[a"""cccmmmmccc4444a]ccc22bb33	chr22:50024118-50024353(-)$1	235	38	78	17.4986
cc[aa[ccc[a####bboooooobb333a]ccc]a]a]cc	chr16:88586274-88586562(+)$1	288	37	77	16.1264
c####ccc$$$$$eeeeellleeeee333ccc4444ccc]	chr16:88587430-88587711(+)$1	281	111	151	12.7928
gg[dddd[dddd"""cccmmmmccc333dddd333dddd2	chr4:74318075-74318353(+)$1	278	139	179	15.4507
ggggggg####gggggggmmmmggggggg22gggggggdd	chr5:651666-651922(+)$1	256	8	48	14.0989
eeee[a[==========mmmm==========]a]eeeee]	chr4:1216803-1217051(-)$1	248	173	213	14.4538
gggggggeeeee"""cccooooooccc]eeeee]gggggg	chr22:20067863-20068143(+)$1	280	121	161	14.4175
ddd!!eeeee!!bb[cccmmmmccc]bb333eeeee22dd	chr14:94849055-94849330(-)$1	275	155	195	14.5369
===========[a"""bbmmmmbb]a]===========cc	chr22:20112250-20112488(+)$1	238	135	175	17.8044
iiiiiii:==========mmmm==========ggggggg[	chr16:3767290-3767590(-)$1	300	112	152	15.6038
iiiiiiiii[bb[bb[ccclllccc]bb22bb]iiiiiii	chr19:1415881-1416133(+)$1	252	133	173	14.0763
::bbccc[ccc[a"""bbmmmmbb333a]cccccc]bbee	chr16:88587511-88587800(+)$1	289	142	182	13.4553
$iiiiiiiii[a"""ccclllcccaiiiiiiiii4444ee	chr19:3062107-3062360(-)$1	253	66	106	17.1132
d[bb[cccccc[bb[cccmmmmccc]bbccc]cccbb]dd	chr20:34252567-34252897(-)$1	330	130	170	14.9019
[ccc!!a[cccccc[cccmmmmccc]ccc333ccc]a22c	chr8:1780290-1780537(+)$1	247	156	196	17.4920
b[ccc####ccc"""cccmmmmccc333ccc4444ccc]b	chr5:649562-649809(+)$1	247	43	83	18.0743
[cccccc!!ccc[ddddmmmmdddd22ccc22ccc]ccc]	chr4:122744714-122744974(-)$1	260	128	168	13.1831
hhhhhh[a!!bb[a[cccmmmmccc]a22bb22a]hhhhh	chr21:46856657-46857032(+)$1	375	230	270	13.9842
dda[bbdddd[ccc[cccmmmmccc]ccc22dddd]bb22	chr19:6228979-6229235(-)$1	256	134	174	13.2066
[bba[ffffff####cccmmmmccc4444ffffff]a]bb	chr5:648130-648394(+)$1	264	214	254	16.0892
dbb[==========!!ccclllccc22==========]bb	chr17:79962898-79963132(+)$1	234	131	171	16.5383
ii[ccc[a!!bb"""ddddllldddd]bb22a]ccciiii	chr16:89035485-89035777(-)$1	292	17	57	13.5574
!ccc[ggggggg"""cccmmmmccc333ggggggg]ccc]	chrX:20284774-20285016(-)$1	242	161	201	19.0085
ca[dddd[ffffff[cccmmmmcccffffffdddd]a22c	chr19:4035262-4035559(+)$1	297	206	246	13.0029
=======$$$$$bb[cccnnnnnccc]bb===========	chr22:49977000-49977244(-)$1	244	82	122	14.8366

#otherMatches

#Seq PSSM
GGCCCAGCGCCCCGGAGGAAGGCGUCGCGGGCGCUCUGCU	chr5:154135174-154135469(+)$1	295	36	76	12.9692
CCUGCCCCGCCCUUAGAUCUGCAUCCCGUGGGUGGGGUGG	chr2:10538749-10539095(+)$1	346	56	96	20.3550
GGGAAGGUGUCAUGGGCCUAAGGGAAGGUGUCAUGGUCUG	chr16:641100-641348(+)$1	248	71	111	15.8510
CAGGCCAGAGCUGGCUGGAGCCUUCCAGUCUCUGGUCUGU	chr3:128214501-128214774(+)$1	273	190	230	14.5268
UGGGGGUCAGGGUGAGCAGGGGAUGCACUUUGGCCCUGGA	chr22:50037570-50037846(-)$1	276	81	121	15.7929
cgccgcguccucgcugccccgggccgggcgggcgggcgcc	chr7:156931810-156932053(+)$1	243	33	73	14.4146
UGGGGGCGGGGUCGGCCUUGGGGGGCUGGUCCGCGGACAG	chr19:2270068-2270303(+)$1	235	155	195	13.1281
CACCUGCAGGACUGCGGAGAUCUCCUUGGCGCUGCGGGGC	chr2:47402778-47403059(-)$1	281	173	213	16.7587
CGGCUUUUCUGCGCGUCGGUUUCUGCCGCGCUGAGUUGCC	chr22:49977827-49978077(-)$1	250	38	78	13.8655
GAGGUGCAGCUGUGUCUGUUCAGGUGCAGAUGCAGCUGCA	chr9:96433091-96433361(+)$1	270	162	202	15.8602
GGCGGCCACCCGGAGCCAGCGGAGGGACAGGUAGGUGGCC	chrX:153686584-153686856(+)$1	272	154	194	14.1306
GUUCACCCUCUAAAUCACCACGAUGAUUUAGAGGUAAGGA	chr2:149639254-149639498(-)$1	244	180	220	15.8157
agguagguggauggguagaugggCUGGCCAGGGCUAUACC	chr17:43526472-43526737(-)$1	265	115	155	13.4413
aaacgugugugcgcacguauguauguguguacauuuguau	chr16:89980254-89980515(+)$1	261	216	256	12.9839
CGGUGGGCGUGAUGGGGCUCGUGGCCCUCAGCCGGGCGCC	chr21:44395291-44395544(+)$1	253	114	154	14.7756
AGGAGGUAGGAUCUGGUGCAGGUAUAAGGAUCUGGGUCUU	chr19:34882747-34883039(+)$1	292	145	185	13.5502
CUUCAGACACUUUGUCAGAACCCUUAAAGGUGGGUGACGU	chr1:3655585-3655827(-)$1	242	176	216	13.0178
gggcgggcgggcgccgagagccucccagcccgccccgugc	chr7:156931672-156931985(+)$1	313	196	236	13.2248
UAGAUGACAAAGACAGGAGAAUCCAGGGGUCACCGGGGCC	chr8:1792426-1792661(+)$1	235	89	129	13.8846
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAUCAGUU	chrM:12684-12901(+)$1	217	82	122	12.1246
GGGUAAAGGGCCAGAGACCUGGGUCUACAGGGCAGACAUC	chr19:34874507-34874826(+)$1	319	173	213	14.6653
GGGUUCUCGGGUAGCGGCGAUGGUCAGCCCCGGCUCCCCC	chr12:112036075-112036354(-)$1	279	55	95	14.3827
AGGAGCUGAGCCAGGUGCGGGCGCAGCACAGAGCCGAGGU	chr5:652963-653201(+)$1	238	171	211	15.0367
CGAAGUAUUGGGACAAUGUGAACGUAGUCGCCGCCGAUUC	chr15:89878264-89878480(+)$1	216	156	196	17.4102
GAGAUUGUGUAAAAUGAUGCCAAAAUAUCAAAUAUGAAUU	chr2:216297948-216298206(-)$1	258	168	208	12.3513
CACCGCCUGCCCAGUGACACAUGUUUAACGGCCGCGGUAC	chrM:2530-2733(+)$1	203	9	49	16.7237
agugugggggggguuugugugugcauggugugugugcgcg	chr15:40342747-40343024(+)$1	277	170	210	15.7004
CCAGGCUCUAGGCUAAGGCAUGCUGGGGGCCCGGAGCCUG	chr20:35486239-35486452(-)$1	213	8	48	15.0780
AGAAAUCACUCCUCCGGCGUGUGUGUCUGUGUGUGUCUUU	chr22:49992244-49992481(-)$1	237	44	84	16.2611
AUUGUUACCCCGUCUGUGACCUCGCCUCCCAGGGCUGCUC	chr22:50024118-50024353(-)$1	235	38	78	17.4986
uugacggcuggguagauggauagauggaugaguggaugga	chr16:88586274-88586562(+)$1	288	37	77	16.1264
auggaugaauAUAUGGCCUGAGGCCAACCUCAGUGUUCCC	chr16:88587430-88587711(+)$1	281	111	151	12.7928
GGCCAUGCUUCAGCAGCUUGGUGGUGGAUGAAACAUAUGU	chr4:74318075-74318353(+)$1	278	139	179	15.4507
UUUCACCUUUACUCCCUGGCUAUAGGGGGAUGGUGAGAAG	chr5:651666-651922(+)$1	256	8	48	14.0989
UUGUCCAGGGGGCGGUGCCUCCGCUGUCUCCAGAGCAAGC	chr4:1216803-1217051(-)$1	248	173	213	14.4538
cgccucccuccgggaccgaggccgcgggcggggcgggggc	chr22:20067863-20068143(+)$1	280	121	161	14.4175
CUCCAGCUGACCACCGGCAAUGGCCUGUUCCUCAGCGAGG	chr14:94849055-94849330(-)$1	275	155	195	14.5369
UCUGACCCUGGGCUUCUGACUUCACGGCCAGGGUCAGAAU	chr22:20112250-20112488(+)$1	238	135	175	17.8044
GGGGCCGCCGCCUGCGGCCUUUGCUGCGGGCGCCGGCGCU	chr16:3767290-3767590(-)$1	300	112	152	15.6038
AGCUCCUGGCGGUUGGCUGUGGCAGACACUUCACCAGGGG	chr19:1415881-1416133(+)$1	252	133	173	14.0763
UUCCCUCCUCCGUGCUGUGAAAACUAAAGGGAGAGUGGCC	chr16:88587511-88587800(+)$1	289	142	182	13.4553
CGGCGCCGGGACAAAggcgcggccgcccggcgcccccagc	chr19:3062107-3062360(-)$1	253	66	106	17.1132
GGGCUGGGGCUGUCGGCCGCGGGGCGGAGGCACUCGCGCG	chr20:34252567-34252897(-)$1	330	130	170	14.9019
GUGCAGCCGCCCUUGCUGUGGACAGAGAGACaggcagagg	chr8:1780290-1780537(+)$1	247	156	196	17.4920
GGACUGUGAGGUGUGACUGUGAGGUGUGACUGUGAGGUGU	chr5:649562-649809(+)$1	247	43	83	18.0743
UGGGCAGAGUGCACGCUGCUUGGCGCCGCAGGCUGAUCCC	chr4:122744714-122744974(-)$1	260	128	168	13.1831
AGGAGCUGUGGCUGGGGCUUCUGCUGUCUGCAUCCGUUCC	chr21:46856657-46857032(+)$1	375	230	270	13.9842
CCCUGGGCCGCUCUGGGCUGCAGCCAGGACCUGGCUCCCU	chr19:6228979-6229235(-)$1	256	134	174	13.2066
GACCAUGGGGUGUGGGCUGUGAGGUAUCAACCCUGAGUGU	chr5:648130-648394(+)$1	264	214	254	16.0892
CGAGUGUUCCGGAAAUAUUGCUGGUUCUUCUGGGGCAGUC	chr17:79962898-79963132(+)$1	234	131	171	16.5383
CAGUAGAGAAGGAACUGGAGAAUUCACCCCACCCUGUGGG	chr16:89035485-89035777(-)$1	292	17	57	13.5574
gccgccgccgccgcugccgUGGGGCUCgggcggcgacgga	chrX:20284774-20285016(-)$1	242	161	201	19.0085
ccgagccucuguuucugcauuuguaaaauggggcugguag	chr19:4035262-4035559(+)$1	297	206	246	13.0029
CAUGGUCAGGAACCGCCCAGGAGGGGAGGGGCCGUGUCCG	chr22:49977000-49977244(-)$1	244	82	122	14.8366

#DB
(((..((((((((((.(.....).))).)))))))..)))	chr5:154135174-154135469(+)$1	1	36	76	12.9692
((((((((((((...(((....)))....)))))))))))	chr2:10538749-10539095(+)$1	1	56	96	20.3550
(.....(((.(((...((....))...))).)))..))))	chr16:641100-641348(+)$1	1	71	111	15.8510
((((((((((...((((((....)))))))))))))))).	chr3:128214501-128214774(+)$1	1	190	230	14.5268
(.(((((((((((..(((.....)))))))))))))).)(	chr22:50037570-50037846(-)$1	1	81	121	15.7929
.(((.(((((.(.(.(((...))).).).)))))))))))	chr7:156931810-156932053(+)$1	1	33	73	14.4146
((...(((((..((((((....)))))).)))))...)))	chr19:2270068-2270303(+)$1	1	155	195	13.1281
(.(((((((..(((.(((....))).)))..)))))))))	chr2:47402778-47403059(-)$1	1	173	213	16.7587
.(((..(((.(((((.(((...))).))))).)))..)))	chr22:49977827-49978077(-)$1	1	38	78	13.8655
.((((((((((((((((((......)))))))))))))))	chr9:96433091-96433361(+)$1	1	162	202	15.8602
((((((((((....(((.((.....).).))).)))))))	chrX:153686584-153686856(+)$1	1	154	194	14.1306
((((..(((((((((((......)))))))))))...)))	chr2:149639254-149639498(-)$1	1	180	220	15.8157
((((((((...(((.(((.....))).)))..))).))))	chr17:43526472-43526737(-)$1	1	115	155	13.4413
..(((.((((((((((((....)))))))))))).)))..	chr16:89980254-89980515(+)$1	1	216	256	12.9839
((.(.(((.(((.(((.(....).))))))))).).))))	chr21:44395291-44395544(+)$1	1	114	154	14.7756
.(((((..((((((.(((....)))..))))))....)))	chr19:34882747-34883039(+)$1	1	145	185	13.5502
..(((..((((((...((....))..))))))..))).))	chr1:3655585-3655827(-)$1	1	176	216	13.0178
((((((((((((...(((...)))...))))))))...))	chr7:156931672-156931985(+)$1	1	196	236	13.2248
(....(((.....(.(((...))).)..))))))))).))	chr8:1792426-1792661(+)$1	1	89	129	13.8846
(((..(((((.((((......))))...))))).))))))	chrM:12684-12901(+)$1	1	82	122	12.1246
.(((.....(((..((((....))))....)))....)))	chr19:34874507-34874826(+)$1	1	173	213	14.6653
(((...(((((..(((((....))).)))))))...))))	chr12:112036075-112036354(-)$1	1	55	95	14.3827
(((..(((.((....(((....))))).)))..))....)	chr5:652963-653201(+)$1	1	171	211	15.0367
.(((....((((((.(((....))).))).)))....)))	chr15:89878264-89878480(+)$1	1	156	196	17.4102
((((((..(((...(((((......)))))..))).))))	chr2:216297948-216298206(-)$1	1	168	208	12.3513
.(((((..(((....(((....)))....))).))))).)	chrM:2530-2733(+)$1	1	9	49	16.7237
.(((((.(.(.(.(.(((....))).).).).).))))).	chr15:40342747-40343024(+)$1	1	170	210	15.7004
(((((((((.((((..((....))...)))).))))))))	chr20:35486239-35486452(-)$1	1	8	48	15.0780
(((...(((.(..(.(((......))).).).)))..)))	chr22:49992244-49992481(-)$1	1	44	84	16.2611
(..((..(((.(...(((....)))....).)))..))..	chr22:50024118-50024353(-)$1	1	38	78	17.4986
((.((.(((.(....((......))...).))).).).))	chr16:88586274-88586562(+)$1	1	37	77	16.1264
(....(((.....(((((...)))))...)))....))).	chr16:88587430-88587711(+)$1	1	111	151	12.7928
((.((((.((((...(((....)))...))))...)))).	chr4:74318075-74318353(+)$1	1	139	179	15.4507
(((((((....(((((((....)))))))..)))))))((	chr5:651666-651922(+)$1	1	8	48	14.0989
((((.(.((((((((((....)))))))))).).))))).	chr4:1216803-1217051(-)$1	1	173	213	14.4538
((((((((((((...(((......))).))))).))))))	chr22:20067863-20068143(+)$1	1	121	161	14.4175
(((..(((((..((.(((....))).))...)))))..))	chr14:94849055-94849330(-)$1	1	155	195	14.5369
(((((((((((.(...((....)).).)))))))))))))	chr22:20112250-20112488(+)$1	1	135	175	17.8044
))))))).((((((((((....))))))))))(((((((.	chr16:3767290-3767590(-)$1	1	112	152	15.6038
(((((((((.((.((.(((...))).))..)).)))))))	chr19:1415881-1416133(+)$1	1	133	173	14.0763
..(((((.(((.(...((....))...).)))))).))((	chr16:88587511-88587800(+)$1	1	142	182	13.4553
.(((((((((.(...(((...)))))))))))))....))	chr19:3062107-3062360(-)$1	1	66	106	17.1132
(.((.((((((.((.(((....))).))))).))))).))	chr20:34252567-34252897(-)$1	1	130	170	14.9019
.(((..(.((((((.(((....))).)))...))).)..)	chr8:1780290-1780537(+)$1	1	156	196	17.4920
(.(((....(((...(((....)))...)))....))).)	chr5:649562-649809(+)$1	1	43	83	18.0743
.((((((..(((.((((....))))..)))..))).))).	chr4:122744714-122744974(-)$1	1	128	168	13.1831
((((((.(..((.(.(((....))).)..))..).)))))	chr21:46856657-46857032(+)$1	1	230	270	13.9842
(((.((((((.(((.(((....))).)))..)))).))..	chr19:6228979-6229235(-)$1	1	134	174	13.2066
.(((.((((((....(((....)))....)))))).).))	chr5:648130-648394(+)$1	1	214	254	16.0892
)((.((((((((((..(((...)))..)))))))))).))	chr17:79962898-79963132(+)$1	1	131	171	16.5383
((.(((.(..((...((((...)))).))..).)))))))	chr16:89035485-89035777(-)$1	1	17	57	13.5574
.(((.(((((((...(((....)))...))))))).))).	chrX:20284774-20285016(-)$1	1	161	201	19.0085
((.((((.((((((.(((....))))))))))))).)..)	chr19:4035262-4035559(+)$1	1	206	246	13.0029
(((((((.....((.(((.....))).)))))))))))))	chr22:49977000-49977244(-)$1	1	82	122	14.8366

#PSSM
c : 0.12	= : 0.12	[ : 0.11	d : 0.11	g : 0.09	" : 0.07	i : 0.07	e : 0.05	: : 0.05	! : 0.03	h : 0.03	b : 0.03	a : 0.01	f : 0.01	$ : 0.01	
c : 0.20	= : 0.11	e : 0.11	g : 0.09	i : 0.09	[ : 0.07	d : 0.07	b : 0.05	: : 0.03	# : 0.03	h : 0.03	$ : 0.01	" : 0.01	! : 0.01	a : 0.01	
c : 0.22	= : 0.12	e : 0.11	g : 0.09	[ : 0.09	b : 0.09	i : 0.07	d : 0.03	# : 0.03	h : 0.03	$ : 0.01	" : 0.01	! : 0.01	a : 0.01	
c : 0.22	= : 0.11	e : 0.11	! : 0.07	g : 0.07	i : 0.07	" : 0.05	a : 0.05	d : 0.05	b : 0.05	# : 0.03	[ : 0.03	$ : 0.01	h : 0.01	
= : 0.14	! : 0.12	[ : 0.11	c : 0.11	g : 0.07	e : 0.07	i : 0.07	" : 0.05	# : 0.05	$ : 0.03	h : 0.03	b : 0.03	d : 0.03	a : 0.01	
c : 0.16	= : 0.14	e : 0.12	g : 0.11	! : 0.09	i : 0.07	$ : 0.03	[ : 0.03	h : 0.03	" : 0.03	# : 0.03	d : 0.03	a : 0.01	b : 0.01	f : 0.01	
c : 0.22	= : 0.18	g : 0.09	e : 0.09	! : 0.09	[ : 0.07	i : 0.07	d : 0.05	# : 0.03	h : 0.01	$ : 0.01	a : 0.01	f : 0.01	
c : 0.20	= : 0.18	e : 0.11	! : 0.07	[ : 0.07	g : 0.05	# : 0.05	a : 0.05	i : 0.05	f : 0.03	$ : 0.03	h : 0.01	: : 0.01	d : 0.01	
= : 0.20	c : 0.20	e : 0.11	f : 0.07	$ : 0.07	g : 0.05	[ : 0.05	i : 0.05	! : 0.05	d : 0.03	# : 0.03	" : 0.01	h : 0.01	
= : 0.20	c : 0.20	[ : 0.11	e : 0.11	f : 0.07	! : 0.05	$ : 0.05	g : 0.03	d : 0.03	" : 0.01	h : 0.01	b : 0.01	a : 0.01	# : 0.01	i : 0.01	
c : 0.20	= : 0.16	[ : 0.11	f : 0.07	b : 0.07	! : 0.05	e : 0.05	$ : 0.05	g : 0.03	" : 0.03	# : 0.03	d : 0.03	a : 0.03	h : 0.01	
c : 0.18	= : 0.14	# : 0.09	a : 0.07	! : 0.07	g : 0.05	f : 0.05	$ : 0.05	d : 0.05	[ : 0.05	b : 0.05	" : 0.03	e : 0.03	h : 0.01	
" : 0.20	c : 0.12	= : 0.12	[ : 0.11	# : 0.09	f : 0.07	! : 0.05	b : 0.05	$ : 0.03	d : 0.03	a : 0.03	e : 0.01	g : 0.01	
" : 0.25	c : 0.12	= : 0.11	a : 0.09	# : 0.09	b : 0.09	f : 0.07	d : 0.05	! : 0.03	e : 0.03	g : 0.01	
[ : 0.27	" : 0.24	= : 0.09	# : 0.07	c : 0.05	! : 0.05	e : 0.05	d : 0.05	f : 0.03	b : 0.03	g : 0.01	
c : 0.55	= : 0.09	" : 0.07	[ : 0.05	d : 0.05	f : 0.03	e : 0.03	! : 0.03	o : 0.01	b : 0.01	g : 0.01	
c : 0.59	b : 0.11	= : 0.09	d : 0.05	f : 0.03	e : 0.03	a : 0.01	[ : 0.01	o : 0.01	g : 0.01	
c : 0.57	b : 0.09	= : 0.05	o : 0.05	f : 0.03	d : 0.03	e : 0.03	m : 0.03	n : 0.01	[ : 0.01	a : 0.01	g : 0.01	
m : 0.59	l : 0.09	o : 0.09	n : 0.07	c : 0.05	f : 0.01	= : 0.01	a : 0.01	e : 0.01	d : 0.01	
m : 0.61	l : 0.16	o : 0.12	n : 0.07	a : 0.01	
m : 0.61	l : 0.16	o : 0.12	n : 0.09	
m : 0.57	o : 0.11	n : 0.09	c : 0.07	l : 0.07	d : 0.03	e : 0.01	= : 0.01	
c : 0.48	o : 0.11	b : 0.09	n : 0.07	d : 0.07	= : 0.05	a : 0.03	m : 0.01	f : 0.01	e : 0.01	g : 0.01	
c : 0.53	b : 0.11	o : 0.07	= : 0.07	d : 0.07	] : 0.03	f : 0.03	n : 0.01	e : 0.01	g : 0.01	
c : 0.53	3 : 0.07	= : 0.07	d : 0.07	] : 0.05	f : 0.03	o : 0.03	n : 0.01	2 : 0.01	b : 0.01	e : 0.01	g : 0.01	a : 0.01	
] : 0.20	3 : 0.16	c : 0.12	= : 0.09	4 : 0.07	a : 0.07	2 : 0.07	f : 0.05	d : 0.03	e : 0.03	b : 0.01	g : 0.01	i : 0.01	
3 : 0.18	c : 0.14	= : 0.11	] : 0.11	4 : 0.09	b : 0.09	f : 0.07	2 : 0.07	e : 0.03	a : 0.03	g : 0.01	i : 0.01	
c : 0.14	= : 0.14	3 : 0.11	b : 0.11	] : 0.09	4 : 0.09	f : 0.09	a : 0.05	e : 0.03	2 : 0.03	h : 0.01	d : 0.01	g : 0.01	i : 0.01	
c : 0.22	= : 0.14	4 : 0.09	e : 0.09	f : 0.07	] : 0.07	g : 0.05	a : 0.05	d : 0.03	3 : 0.03	2 : 0.03	b : 0.03	h : 0.01	i : 0.01	
c : 0.22	= : 0.20	e : 0.12	2 : 0.09	f : 0.07	] : 0.07	g : 0.03	d : 0.03	3 : 0.03	h : 0.01	4 : 0.01	a : 0.01	i : 0.01	b : 0.01	
c : 0.22	= : 0.20	2 : 0.12	e : 0.11	f : 0.07	g : 0.03	] : 0.03	a : 0.03	d : 0.03	3 : 0.03	b : 0.03	h : 0.01	i : 0.01	
= : 0.18	c : 0.18	e : 0.11	] : 0.11	2 : 0.09	g : 0.07	f : 0.07	d : 0.05	h : 0.01	b : 0.01	i : 0.01	3 : 0.01	4 : 0.01	a : 0.01	
c : 0.25	= : 0.16	e : 0.11	g : 0.09	] : 0.07	f : 0.05	2 : 0.05	a : 0.03	i : 0.03	4 : 0.03	d : 0.03	h : 0.01	3 : 0.01	
c : 0.20	= : 0.18	] : 0.11	g : 0.09	4 : 0.09	e : 0.07	i : 0.05	f : 0.03	3 : 0.03	d : 0.03	2 : 0.01	h : 0.01	b : 0.01	a : 0.01	
c : 0.20	= : 0.16	g : 0.11	4 : 0.11	3 : 0.07	e : 0.07	2 : 0.03	] : 0.03	a : 0.03	f : 0.03	i : 0.03	d : 0.03	h : 0.01	b : 0.01	
] : 0.20	= : 0.16	4 : 0.11	2 : 0.09	c : 0.09	3 : 0.07	g : 0.07	e : 0.07	i : 0.03	f : 0.01	d : 0.01	b : 0.01	h : 0.01	
= : 0.18	c : 0.12	g : 0.09	4 : 0.09	2 : 0.07	e : 0.07	b : 0.07	a : 0.07	3 : 0.05	i : 0.05	d : 0.03	h : 0.03	f : 0.01	
c : 0.18	= : 0.14	] : 0.12	g : 0.11	e : 0.11	d : 0.05	i : 0.05	b : 0.05	2 : 0.05	h : 0.03	4 : 0.03	3 : 0.01	
c : 0.20	= : 0.12	d : 0.12	e : 0.12	g : 0.07	i : 0.05	2 : 0.05	f : 0.03	h : 0.03	] : 0.03	b : 0.03	a : 0.01	: : 0.01	4 : 0.01	3 : 0.01	
c : 0.18	= : 0.11	d : 0.11	] : 0.09	e : 0.09	b : 0.09	g : 0.05	i : 0.05	f : 0.03	h : 0.03	2 : 0.03	E : 0.01	: : 0.01	7 : 0.01	3 : 0.01	[ : 0.01	

#score	809.3869236214163
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_UTR_m1_run1.txt

#BEAR
ffffffuuuuuuuuuuuufffff	chr9:132899800-132900102(+)$1	302	74	97	22.4031
HHddddvvvvvvvvvvvvvdddd	chr6:160101659-160101882(-)$1	223	57	80	21.8997
fffffftttttttttttffffff	chr1:160966166-160966415(-)$1	249	145	168	21.1520
##ddddvvvvvvvvvvvvvdddd	chr1:1270744-1271044(-)$1	300	35	58	23.2053
cc[ddddtttttttttttdddd]	chr7:2702389-2702608(+)$1	219	117	140	23.0766
eeee[bbtttttttttttbbeee	chr17:45760071-45760354(+)$1	283	251	274	21.7030
dddddduuuuuuuuuuuudddd]	chr17:41167084-41167312(-)$1	228	70	93	23.2354
gggggvvvvvvvvvvvvvggggg	chr4:2250756-2251087(-)$1	331	179	202	23.5378
ffffffuuuuuuuuuuuufffff	chr2:70524005-70524344(-)$1	339	83	106	22.4031
gggggggtttttttttttggggg	chr22:29724513-29724791(-)$1	278	164	187	22.9132
[ccc[bbtttttttttttbb]cc	chr2:26413670-26414020(-)$1	350	46	69	22.2249
hhhhhhhttttttttttthhhhh	chr19:48374218-48374518(-)$1	300	39	62	21.1903
gggggggtttttttttttggggg	chr12:3392792-3393048(+)$1	256	150	173	22.9132
fffffftttttttttttffffff	chr16:85009110-85009348(-)$1	238	36	59	21.1520
[ddddvvvvvvvvvvvvvddddg	chr19:5206493-5206749(-)$1	256	212	235	23.2855
c:eeeeettttttttttteeeee	chr8:38270881-38271208(-)$1	327	97	120	21.2077
!!dddduuuuuuuuuuuudddd]	chrX:152916382-152916621(+)$1	239	47	70	23.8013
ccddddwwwwwwwwwwwwwwddd	chr8:22277393-22277637(+)$1	244	37	60	21.4432
gggggggtttttttttttggggg	chr9:5785449-5785699(-)$1	250	64	87	22.9132
=====vvvvvvvvvvvvv=====	chr5:176524850-176525169(+)$1	319	13	36	23.5702
h[dddduuuuuuuuuuuudddd2	chr6:24534157-24534495(+)$1	338	215	238	23.3333
fff!!avvvvvvvvvvvvva22f	chr11:67022842-67023122(+)$1	280	221	244	22.6170
!!ddddwwwwwwwwwwwwwwddd	chr17:73940803-73941026(-)$1	223	16	39	21.6913
[ddddbbtttttttttttbb]dd	chr4:1019319-1019551(+)$1	232	125	148	22.1085
h[dddduuuuuuuuuuuuddddh	chr6:38120508-38120816(+)$1	308	202	225	23.3685
iiiiiiitttttttttttiiiii	chr2:20401814-20402089(-)$1	275	206	229	22.8602
[eeeeevvvvvvvvvvvvveeee	chr19:4360395-4360679(-)$1	284	67	90	22.9137
fffffwwwwwwwwwwwwwwffff	chr8:17424124-17424377(+)$1	253	43	66	20.9179
=====attttttttttta]====	chr19:43012986-43013257(-)$1	271	166	189	22.9396
g!!ddddtttttttttttdddd3	chr9:132652081-132652330(-)$1	249	105	128	23.1722
c[dddduuuuuuuuuuuudddd]	chr17:79801154-79801361(-)$1	207	147	170	23.7456
iiiiiivvvvvvvvvvvvviiii	chr16:31501600-31501902(-)$1	302	187	210	23.6144
ffffffuuuuuuuuuuuufffff	chr6:150045878-150046166(-)$1	288	92	115	22.4031
[cccwwwwwwwwwwwwwwccc]d	chr16:57697746-57698006(+)$1	260	38	61	21.4720
==[cccuuuuuuuuuuuuccc]=	chrX:77083589-77083818(-)$1	229	55	78	23.9768
dddddddtttttttttttdddd]	chr12:6979831-6980069(+)$1	238	191	214	22.6113
d!!cccuuuuuuuuuuuuccc22	chr1:40539103-40539361(-)$1	258	85	108	23.4623
d!!ccctttttttttttccc22d	chr10:82031976-82032207(-)$1	231	85	108	22.2143
fffffvvvvvvvvvvvvvfffff	chr22:22051111-22051477(+)$1	366	160	183	22.4112
!eeeeevvvvvvvvvvvvveeee	chr16:56395872-56396119(-)$1	247	137	160	22.8753
gggggvvvvvvvvvvvvvggggg	chr20:62563631-62563884(+)$1	253	126	149	23.5378
cc[ddddtttttttttttdddd]	chr3:9957679-9957982(+)$1	303	109	132	23.0766
eee[ccctttttttttttccc]e	chr17:72443244-72443517(+)$1	273	218	241	22.8412
=[cccvvvvvvvvvvvvvccc]=	chr2:97525511-97525785(-)$1	274	167	190	23.7940
###ccctttttttttttccc444	chr10:102753641-102753924(+)$1	283	38	61	22.1403
hhhhhhhttttttttttthhhhh	chr6:42854483-42854736(+)$1	253	35	58	21.1903
ccccccvvvvvvvvvvvvvccc]	chr16:4505682-4505913(+)$1	231	122	145	23.6230
hhhhhhhttttttttttthhhhh	chr17:73940880-73941090(-)$1	210	33	56	21.1903
d!!ccctttttttttttccc22d	chr10:82032061-82032305(-)$1	244	183	206	22.2143
dddd[auuuuuuuuuuuua]ddd	chr11:71145610-71145845(-)$1	235	210	233	23.0442
dd[bbvvvvvvvvvvvvvbb]dd	chr10:102120925-102121137(+)$1	212	130	153	22.1664
gggggguuuuuuuuuuuuggggg	chr12:53458917-53459238(-)$1	321	180	203	23.6181
hhhhhhhttttttttttthhhhh	chr19:46893627-46894064(+)$1	437	405	428	21.1903
d!!bbvvvvvvvvvvvvvbb]dd	chr16:56396392-56396705(-)$1	313	30	53	22.4840
:eeeeeuuuuuuuuuuuueeeee	chr15:68499711-68500041(-)$1	330	10	33	21.6697
ggggggwwwwwwwwwwwwwwggg	chr12:51325288-51325497(+)$1	209	144	167	21.6930
fff[bbuuuuuuuuuuuubb]ff	chr3:52873507-52873827(-)$1	320	92	115	22.1959
hhhhhhhttttttttttthhhhh	chr11:86659685-86659949(-)$1	264	35	58	21.1903
fffffwwwwwwwwwwwwwwffff	chr19:2755049-2755330(-)$1	281	115	138	20.9179
::eeeeettttttttttteeeee	chr2:37431545-37431861(+)$1	316	35	58	20.1152
f!!ccctttttttttttccc333	chr11:34167708-34167977(+)$1	269	94	117	22.7501
c[dddduuuuuuuuuuuudddd]	chr17:79801039-79801272(-)$1	233	58	81	23.7456
f[ddddwwwwwwwwwwwwwwddd	chr16:57417249-57417549(+)$1	300	74	97	21.5598
cc[ddddtttttttttttddddc	chr3:128888679-128889000(-)$1	321	99	122	22.8844
======uuuuuuuuuuuu=====	chr17:7215441-7215704(+)$1	263	161	184	23.7008
%%%cccuuuuuuuuuuuuccc66	chr3:57557335-57557609(-)$1	274	84	107	20.4418
hhdddduuuuuuuuuuuudddd]	chr20:30822570-30822866(+)$1	296	98	121	23.3334

#otherMatches

#Seq PSSM
AGCUUUUAAAAAAUUAUUGAAGC	chr9:132899800-132900102(+)$1	302	74	97	22.4031
uggcuacuuuuuguauuuuuagc	chr6:160101659-160101882(-)$1	223	57	80	21.8997
UGAGAUUUUUAAAGUAUGUUUCA	chr1:160966166-160966415(-)$1	249	145	168	21.1520
CAGUCUGAAAGUACGUGGAGGAC	chr1:1270744-1271044(-)$1	300	35	58	23.2053
GGGUGCCACAGACCGACAGGCAG	chr7:2702389-2702608(+)$1	219	117	140	23.0766
UGUGUGAGUGAGGCGGUAUCCAC	chr17:45760071-45760354(+)$1	283	251	274	21.7030
CAACACUGCCAAAAAUCUGUGUA	chr17:41167084-41167312(-)$1	228	70	93	23.2354
UGUCCUCCCAUCUCCUGUGGGCA	chr4:2250756-2251087(-)$1	331	179	202	23.5378
GUUUCAGUCCCUAAAAAAUGAAA	chr2:70524005-70524344(-)$1	339	83	106	22.4031
AGAGCGCAGUGCACUCCCGUGCU	chr22:29724513-29724791(-)$1	278	164	187	22.9132
GCCAAGACCAUCUCUCCCUCCUG	chr2:26413670-26414020(-)$1	350	46	69	22.2249
gucaggagacugagaccauccug	chr19:48374218-48374518(-)$1	300	39	62	21.1903
UCUGUCCAGUCUCAAUCAGGACA	chr12:3392792-3393048(+)$1	256	150	173	22.9132
AUUGCCAGUGUUGUUUAGGCAAU	chr16:85009110-85009348(-)$1	238	36	59	21.1520
AUUCCAAAACCAGAUUCCGGGGU	chr19:5206493-5206749(-)$1	256	212	235	23.2855
CAGCUGUAACCCUCACCCACAGC	chr8:38270881-38271208(-)$1	327	97	120	21.2077
GGGAGGGGAAGAAGAAGGCCUCA	chrX:152916382-152916621(+)$1	239	47	70	23.8013
CCUCACCUCCUUUUCUCUCAGUG	chr8:22277393-22277637(+)$1	244	37	60	21.4432
GUAUGAUGUGCUUUUUAAAUCAU	chr9:5785449-5785699(-)$1	250	64	87	22.9132
GGUUCUGCUCGGCUUCUUGGACC	chr5:176524850-176525169(+)$1	319	13	36	23.5702
GAGGGGCACAGCACCCCUCCCCG	chr6:24534157-24534495(+)$1	338	215	238	23.3333
GAGAUCUCCCAAACCUCACGUCC	chr11:67022842-67023122(+)$1	280	221	244	22.6170
uacugaaaaaaauacaaaaauua	chr17:73940803-73941026(-)$1	223	16	39	21.6913
acaugccagaacauacaaggaca	chr4:1019319-1019551(+)$1	232	125	148	22.1085
CUCCCACAGAGCUGGAAAUGGGG	chr6:38120508-38120816(+)$1	308	202	225	23.3685
AAGAAGACUUUUUUUUUUUUUUU	chr2:20401814-20402089(-)$1	275	206	229	22.8602
CUAUCGCCCAAUGCAAAAUCGAU	chr19:4360395-4360679(-)$1	284	67	90	22.9137
GUAAAUGAGUAAACAAAUUUUUA	chr8:17424124-17424377(+)$1	253	43	66	20.9179
AGUGUCAAUAGAUGAAAGUACAU	chr19:43012986-43013257(-)$1	271	166	189	22.9396
CAACCUGGGAGCAUCUGGCAGGC	chr9:132652081-132652330(-)$1	249	105	128	23.1722
CUGGCCUCUCUACAGCACGGCCU	chr17:79801154-79801361(-)$1	207	147	170	23.7456
CGGAGGACUGCCCACCCCACCUC	chr16:31501600-31501902(-)$1	302	187	210	23.6144
augguauucccaacaaauuauca	chr6:150045878-150046166(-)$1	288	92	115	22.4031
UCUCUCCUUACAACCCCUGGGCC	chr16:57697746-57698006(+)$1	260	38	61	21.4720
AGCUGUGAACAUGAAAAGACAUC	chrX:77083589-77083818(-)$1	229	55	78	23.9768
GCCCAGAUAAUCUUCCUUUUUGA	chr12:6979831-6980069(+)$1	238	191	214	22.6113
UCUUGCUUGGCUAUUUCUGCAUC	chr1:40539103-40539361(-)$1	258	85	108	23.4623
CCUGCCUUUCCAUCCAUGGCCAG	chr10:82031976-82032207(-)$1	231	85	108	22.2143
GCUGGCUCCUUCUCUUCUCCAGC	chr22:22051111-22051477(+)$1	366	160	183	22.4112
UGGUCCUUGAACAAGAUGUGGGC	chr16:56395872-56396119(-)$1	247	137	160	22.8753
UGGGGCCAGUCUCCCCCCUCCCA	chr20:62563631-62563884(+)$1	253	126	149	23.5378
CCAGGCUGGAGAGGUUGGGGCCG	chr3:9957679-9957982(+)$1	303	109	132	23.0766
UCUGGAGAUUCCUGCAACCUCAA	chr17:72443244-72443517(+)$1	273	218	241	22.8412
GGGCCUGCUGUGGACAAUGGCAU	chr2:97525511-97525785(-)$1	274	167	190	23.7940
gggccuaaacaacuagaaggaga	chr10:102753641-102753924(+)$1	283	38	61	22.1403
gucaggagauugagaccauccug	chr6:42854483-42854736(+)$1	253	35	58	21.1903
GCAGAGGGAGAUGGUUAGACUCU	chr16:4505682-4505913(+)$1	231	122	145	23.6230
gucaggaguuugagaccauccug	chr17:73940880-73941090(-)$1	210	33	56	21.1903
CCUGCCUUUCCAUCCAUGGCCAG	chr10:82032061-82032305(-)$1	244	183	206	22.2143
ccucccacaccuucuccagcgag	chr11:71145610-71145845(-)$1	235	210	233	23.0442
UCCAGAUAACUCUCUUUCCUUGA	chr10:102120925-102121137(+)$1	212	130	153	22.1664
GCUCUCCAUCUUUCCCUUGAGAG	chr12:53458917-53459238(-)$1	321	180	203	23.6181
GCUGGGGCUCACCCCCCUCCCCA	chr19:46893627-46894064(+)$1	437	405	428	21.1903
GCUGAUAAAUUUAAUCCUUCUUU	chr16:56396392-56396705(-)$1	313	30	53	22.4840
CUGACCCUACAUUACAUAGGUUA	chr15:68499711-68500041(-)$1	330	10	33	21.6697
gcagugaaccgagaucaugccau	chr12:51325288-51325497(+)$1	209	144	167	21.6930
UAUGAUAAGAUGAGACAAAUGAU	chr3:52873507-52873827(-)$1	320	92	115	22.1959
AGACCAGGCGGUAGGGGACUGGU	chr11:86659685-86659949(-)$1	264	35	58	21.1903
GGGCGACAUCAUGACCUUCUGUC	chr19:2755049-2755330(-)$1	281	115	138	20.9179
aagcuaauuuuuguauuuuuagu	chr2:37431545-37431861(+)$1	316	35	58	20.1152
CUGGCUGGACUGUUAAAAGCAAC	chr11:34167708-34167977(+)$1	269	94	117	22.7501
CUGGCCUCUCUACAGCACGGCCU	chr17:79801039-79801272(-)$1	233	58	81	23.7456
GCCAGGCCCUCUGCCCACUCCCU	chr16:57417249-57417549(+)$1	300	74	97	21.5598
GAUGGUCUUGGAUUGUCUGACCU	chr3:128888679-128889000(-)$1	321	99	122	22.8844
UCCCCAAACCCCUUUAGAUgggg	chr17:7215441-7215704(+)$1	263	161	184	23.7008
UUCUCUCCCUUGCCAAAAAGAUU	chr3:57557335-57557609(-)$1	274	84	107	20.4418
GAGCAUCUCCCAUCGCACGUGCU	chr20:30822570-30822866(+)$1	296	98	121	23.3334

#DB
((((((............)))))	chr9:132899800-132900102(+)$1	1	74	97	22.4031
((((((.............))))	chr6:160101659-160101882(-)$1	1	57	80	21.8997
((((((...........))))))	chr1:160966166-160966415(-)$1	1	145	168	21.1520
..((((.............))))	chr1:1270744-1271044(-)$1	1	35	58	23.2053
((.((((...........)))).	chr7:2702389-2702608(+)$1	1	117	140	23.0766
((((.((...........)))))	chr17:45760071-45760354(+)$1	1	251	274	21.7030
((((((............)))).	chr17:41167084-41167312(-)$1	1	70	93	23.2354
(((((.............)))))	chr4:2250756-2251087(-)$1	1	179	202	23.5378
((((((............)))))	chr2:70524005-70524344(-)$1	1	83	106	22.4031
(((((((...........)))))	chr22:29724513-29724791(-)$1	1	164	187	22.9132
.(((.((...........)).))	chr2:26413670-26414020(-)$1	1	46	69	22.2249
(((((((...........)))))	chr19:48374218-48374518(-)$1	1	39	62	21.1903
(((((((...........)))))	chr12:3392792-3393048(+)$1	1	150	173	22.9132
((((((...........))))))	chr16:85009110-85009348(-)$1	1	36	59	21.1520
.((((.............)))))	chr19:5206493-5206749(-)$1	1	212	235	23.2855
).(((((...........)))))	chr8:38270881-38271208(-)$1	1	97	120	21.2077
..((((............)))).	chrX:152916382-152916621(+)$1	1	47	70	23.8013
((((((..............)))	chr8:22277393-22277637(+)$1	1	37	60	21.4432
(((((((...........)))))	chr9:5785449-5785699(-)$1	1	64	87	22.9132
(((((.............)))))	chr5:176524850-176525169(+)$1	1	13	36	23.5702
(.((((............)))).	chr6:24534157-24534495(+)$1	1	215	238	23.3333
(((..(.............)..)	chr11:67022842-67023122(+)$1	1	221	244	22.6170
..((((..............)))	chr17:73940803-73941026(-)$1	1	16	39	21.6913
.((((((...........)).))	chr4:1019319-1019551(+)$1	1	125	148	22.1085
(.((((............)))))	chr6:38120508-38120816(+)$1	1	202	225	23.3685
(((((((...........)))))	chr2:20401814-20402089(-)$1	1	206	229	22.8602
.(((((.............))))	chr19:4360395-4360679(-)$1	1	67	90	22.9137
(((((..............))))	chr8:17424124-17424377(+)$1	1	43	66	20.9179
((((((...........).))))	chr19:43012986-43013257(-)$1	1	166	189	22.9396
(..((((...........)))).	chr9:132652081-132652330(-)$1	1	105	128	23.1722
(.((((............)))).	chr17:79801154-79801361(-)$1	1	147	170	23.7456
((((((.............))))	chr16:31501600-31501902(-)$1	1	187	210	23.6144
((((((............)))))	chr6:150045878-150046166(-)$1	1	92	115	22.4031
.(((..............))).)	chr16:57697746-57698006(+)$1	1	38	61	21.4720
((.(((............))).)	chrX:77083589-77083818(-)$1	1	55	78	23.9768
(((((((...........)))).	chr12:6979831-6980069(+)$1	1	191	214	22.6113
(..(((............)))..	chr1:40539103-40539361(-)$1	1	85	108	23.4623
(..(((...........)))..)	chr10:82031976-82032207(-)$1	1	85	108	22.2143
(((((.............)))))	chr22:22051111-22051477(+)$1	1	160	183	22.4112
.(((((.............))))	chr16:56395872-56396119(-)$1	1	137	160	22.8753
(((((.............)))))	chr20:62563631-62563884(+)$1	1	126	149	23.5378
((.((((...........)))).	chr3:9957679-9957982(+)$1	1	109	132	23.0766
(((.(((...........))).)	chr17:72443244-72443517(+)$1	1	218	241	22.8412
(.(((.............))).)	chr2:97525511-97525785(-)$1	1	167	190	23.7940
...(((...........)))...	chr10:102753641-102753924(+)$1	1	38	61	22.1403
(((((((...........)))))	chr6:42854483-42854736(+)$1	1	35	58	21.1903
((((((.............))).	chr16:4505682-4505913(+)$1	1	122	145	23.6230
(((((((...........)))))	chr17:73940880-73941090(-)$1	1	33	56	21.1903
(..(((...........)))..)	chr10:82032061-82032305(-)$1	1	183	206	22.2143
((((.(............).)))	chr11:71145610-71145845(-)$1	1	210	233	23.0442
((.((.............)).))	chr10:102120925-102121137(+)$1	1	130	153	22.1664
((((((............)))))	chr12:53458917-53459238(-)$1	1	180	203	23.6181
(((((((...........)))))	chr19:46893627-46894064(+)$1	1	405	428	21.1903
(..((.............)).))	chr16:56396392-56396705(-)$1	1	30	53	22.4840
.(((((............)))))	chr15:68499711-68500041(-)$1	1	10	33	21.6697
((((((..............)))	chr12:51325288-51325497(+)$1	1	144	167	21.6930
(((.((............)).))	chr3:52873507-52873827(-)$1	1	92	115	22.1959
(((((((...........)))))	chr11:86659685-86659949(-)$1	1	35	58	21.1903
(((((..............))))	chr19:2755049-2755330(-)$1	1	115	138	20.9179
..(((((...........)))))	chr2:37431545-37431861(+)$1	1	35	58	20.1152
(..(((...........)))...	chr11:34167708-34167977(+)$1	1	94	117	22.7501
(.((((............)))).	chr17:79801039-79801272(-)$1	1	58	81	23.7456
(.((((..............)))	chr16:57417249-57417549(+)$1	1	74	97	21.5598
((.((((...........)))))	chr3:128888679-128889000(-)$1	1	99	122	22.8844
((((((............)))))	chr17:7215441-7215704(+)$1	1	161	184	23.7008
...(((............)))..	chr3:57557335-57557609(-)$1	1	84	107	20.4418
((((((............)))).	chr20:30822570-30822866(+)$1	1	98	121	23.3334

#PSSM
f : 0.17	c : 0.11	d : 0.11	g : 0.11	h : 0.11	[ : 0.07	= : 0.07	! : 0.04	# : 0.02	e : 0.02	i : 0.02	: : 0.02	H : 0.01	% : 0.01	
f : 0.14	! : 0.11	c : 0.10	g : 0.10	d : 0.08	h : 0.08	[ : 0.08	e : 0.07	= : 0.05	# : 0.02	: : 0.02	i : 0.02	H : 0.01	% : 0.01	
d : 0.23	f : 0.14	e : 0.10	g : 0.10	! : 0.08	[ : 0.07	h : 0.07	c : 0.05	= : 0.04	i : 0.02	# : 0.01	% : 0.01	
d : 0.29	c : 0.16	f : 0.11	g : 0.10	e : 0.08	h : 0.07	= : 0.04	i : 0.02	[ : 0.02	b : 0.02	! : 0.01	
d : 0.28	c : 0.14	f : 0.11	g : 0.10	h : 0.07	e : 0.07	[ : 0.04	= : 0.04	b : 0.04	i : 0.02	! : 0.01	w : 0.01	
d : 0.25	c : 0.13	v : 0.11	f : 0.07	g : 0.07	h : 0.07	e : 0.07	b : 0.05	a : 0.04	w : 0.04	i : 0.02	= : 0.01	
u : 0.26	v : 0.22	t : 0.10	w : 0.10	d : 0.07	h : 0.07	b : 0.04	g : 0.04	e : 0.02	i : 0.01	c : 0.01	
t : 0.40	u : 0.26	v : 0.22	w : 0.10	
t : 0.40	u : 0.26	v : 0.22	w : 0.10	
t : 0.40	u : 0.26	v : 0.22	w : 0.10	
t : 0.40	u : 0.26	v : 0.22	w : 0.10	
t : 0.40	u : 0.26	v : 0.22	w : 0.10	
t : 0.40	u : 0.26	v : 0.22	w : 0.10	
t : 0.40	u : 0.26	v : 0.22	w : 0.10	
t : 0.40	u : 0.26	v : 0.22	w : 0.10	
t : 0.40	u : 0.26	v : 0.22	w : 0.10	
t : 0.40	u : 0.26	v : 0.22	w : 0.10	
t : 0.29	u : 0.26	v : 0.22	w : 0.10	c : 0.05	f : 0.02	a : 0.01	
d : 0.19	c : 0.14	v : 0.10	f : 0.08	b : 0.08	g : 0.08	w : 0.08	h : 0.07	e : 0.04	= : 0.02	i : 0.01	] : 0.01	a : 0.01	
d : 0.22	c : 0.16	f : 0.11	b : 0.08	g : 0.08	h : 0.07	e : 0.07	w : 0.05	= : 0.04	i : 0.02	a : 0.01	] : 0.01	
d : 0.28	f : 0.11	g : 0.10	c : 0.10	e : 0.08	] : 0.07	h : 0.07	= : 0.04	2 : 0.04	i : 0.02	4 : 0.01	3 : 0.01	
d : 0.32	f : 0.13	g : 0.10	e : 0.08	h : 0.07	2 : 0.05	] : 0.05	= : 0.04	c : 0.02	i : 0.02	4 : 0.01	3 : 0.01	6 : 0.01	
d : 0.17	f : 0.14	] : 0.13	g : 0.11	e : 0.10	h : 0.08	= : 0.07	c : 0.02	2 : 0.02	i : 0.02	3 : 0.02	4 : 0.01	6 : 0.01	

#score	1506.2512802042215
#seq	67
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_transcript_m1_run2.txt

#BEAR
iiiiiiiiiddddddddqqqqqqqqdddd]dddd>>>>>>	chr11:17097270-17097510(-)$1	240	23	63	13.3526
b[bb[bb!!ccc"""a[aooooooa]a4444ccc22bb]b	chr19:49611445-49611716(+)$1	271	63	103	10.9385
b[dddd[ccc$$$$$cccooooooccc4444ccc]dddd]	chr19:2270033-2270312(+)$1	279	110	150	12.1972
d[dddd!!bb"""ddddqqqqqqqqddddbb22dddd22d	chr17:56409246-56409457(-)$1	211	107	147	14.3618
eee!!ffffff[eeeeeqqqqqqqqeeeee]ffffff22e	chr16:2015157-2015412(+)$1	255	34	74	13.1168
[=============uuuuuuuuuuuu=============]	chr1:109642782-109642999(+)$1	217	138	178	14.8970
d[iiiiiiiii####cccooooooccc333iiiiiiiii]	chr14:70238205-70238473(+)$1	268	141	181	14.7925
##ggggggg[gggggggqqqqqqqqggggggg22gggggg	chr11:62300140-62300427(-)$1	287	58	98	16.2251
dddd!!bb[ccc"""bbqqqqqqqqbb333ccc]bb22dd	chr17:18965303-18965508(+)$1	205	127	167	14.4312
b[dddd[ccc$$$$$cccooooooccc4444ccc]dddd]	chr19:2269985-2270233(+)$1	248	158	198	12.1972
a[iiiiiiiiieeeeeuuuuuuuuuuuueeeee]iiiiii	chr11:122929530-122929788(-)$1	258	32	72	12.1902
eeee[a[ccc[bb[cccqqqqqqqqccc]bb22ccc]aee	chr12:6619588-6619817(+)$1	229	86	126	14.7912
ddddddd[bb!!eeeeeqqqqqqqqeeeee22bb]dddd]	chr7:98479336-98479610(+)$1	274	62	102	13.6890
"""bb[ccc[eeeeebbqqqqqqqqbb]eeeeecccbb33	chr11:17096143-17096383(-)$1	240	20	60	13.6213
hhhheeeee[ffffffrrrrrrrrrffffff4444eeeee	chr7:120897037-120897295(+)$1	258	121	161	11.9071
""============wwwwwwwwwwwwww============	chr11:62300880-62301181(-)$1	301	79	119	18.1246
cc[dddd[gggggggbbqqqqqqqqbb]gggggggdddd]	chr22:19711121-19711387(+)$1	266	178	218	15.2146
========[cccvvvvvvvvvvvvvccc]===========	chr2:97525522-97525809(-)$1	287	184	224	13.5887
$$$ggggggg"""ddddpppppppdddd]ggggggg333h	chr10:70101631-70101873(+)$1	242	46	86	11.5107
Cccca[ggggggg[cccpppppppccc]ggggggg]a]cc	chr11:17097223-17097432(-)$1	209	54	94	11.1324
[=============uuuuuuuuuuuu=============]	chr1:109642773-109642982(+)$1	209	147	187	14.8970
eeee[dddd####ddddqqqqqqqqdddd22ddddeeeee	chr17:56408718-56408967(-)$1	249	192	232	13.9954
c[ccc[bb"""ffffffqqqqqqqqffffff333bb]ccc	chr16:28847428-28847693(+)$1	265	82	122	14.4659
ccc!!dddd####ddddrrrrrrrrrddddddddccc000	chr11:62297190-62297432(-)$1	242	73	113	12.0788
dddd####eeeeexxxxxxxxxxxxxxxeeeee22dddd]	chr11:62286001-62286236(-)$1	235	163	203	11.3792
eeee####eeeeeddddqqqqqqqqdddd22eeeee22ee	chr17:74557633-74557885(+)$1	252	96	136	13.1879
Cccca[ggggggg[cccpppppppccc]ggggggg]a]cc	chr11:17097255-17097470(-)$1	215	92	132	11.1324
ee[ffffff"""eeeeeqqqqqqqqeeeeeffffffeeee	chr11:17097232-17097454(-)$1	222	132	172	13.2797
cceeeee!!bbffffffqqqqqqqqffffff4444bb22e	chr16:2820991-2821295(+)$1	304	156	196	13.5117
a[==========!!cccqqqqqqqqccc]==========]	chr19:10406575-10406898(+)$1	323	218	258	19.6001
ddddggggggg!!ffffffooooooffffff333gggggg	chr2:97559878-97560136(-)$1	258	103	143	11.4396
:==========^^^^^^^^^^^^^^^^^^==========g	chr11:62284257-62284578(-)$1	321	75	115	12.6075
c[eeeee!!ffffffssssssssssffffff333eeeee]	chr9:134083156-134083434(+)$1	278	72	112	13.5406
gggggggggggg!!ccctttttttttttccc22ggggggg	chr9:100774602-100774855(+)$1	253	87	127	12.9242
===::ggggggg!!cccqqqqqqqqccc333ggggggg::	chr11:289415-289685(+)$1	270	96	136	13.7140
i[bb"""iiiiiiiii[bboooooobbiiiiiiiii4444	chr7:45144352-45144588(-)$1	236	26	66	11.7215
:============[cccpppppppccc]============	chr17:19093316-19093602(-)$1	286	232	272	13.6527
ggggggg!!bb[gggggggooooooggggggg]bb333gg	chr7:158424080-158424350(-)$1	270	84	124	10.7258
))eeeee!!bb"""cccqqqqqqqqccc4444bb333eee	chr6:111136056-111136365(-)$1	309	35	75	15.2300
==eeeee"""dddd[bbqqqqqqqqbb22dddd4444eee	chr11:62285720-62285971(-)$1	251	85	125	13.6367
c[a!!============qqqqqqqq============22a	chr16:28848265-28848530(+)$1	265	8	48	17.9606
cc[dddd[dddd[ddddqqqqqqqqdddd]ddddddddcc	chrX:152956440-152956741(+)$1	301	89	129	13.5741
cc!!==========[bbqqqqqqqqbb]==========cc	chr6:43745813-43746070(+)$1	257	156	196	17.5973
b[ccc!!dddd####ddddrrrrrrrrrddddddddccc]	chr11:62290434-62290675(-)$1	241	196	236	11.1879
==========ccc[cccqqqqqqqqccc]ccc]=======	chr2:203142737-203143009(+)$1	272	182	222	18.0923
'eeeee!!a[ccc[cccooooooccc]ccc]a22eeeee8	chr17:34171875-34172138(+)$1	263	87	127	10.7123
dddd!!dddd####cccqqqqqqqqcccdddd22dddd]=	chr4:770460-770709(-)$1	249	61	101	15.3333
[a[eeeee####bb[bbqqqqqqqqbbbb4444eeeeea]	chr7:119437851-119438198(-)$1	347	41	81	14.0837
$$$dddd[ccc[cccssssssssssccc]ccc22dddd22	chr11:62291481-62291721(-)$1	240	83	123	13.3252
##ggggggg[gggggggqqqqqqqqggggggg22gggggg	chr11:62300306-62300605(-)$1	299	236	276	16.2251
hhhhhh[ccc"""ddddqqqqqqqqdddd]ccc4444hhh	chr2:133015120-133015366(-)$1	246	150	190	14.6153
"dddd!!a[ccceeeeeooooooeeeee]ccca22dddd]	chr17:19091313-19091544(+)$1	231	131	171	10.6715
::dddd[ccc"""ddddrrrrrrrrrdddd]ccc]dddd:	chrM:521-749(+)$1	228	53	93	11.6592
:ggggggg!!eeeeesssssssssseeeee22ggggggg:	chr11:93454813-93455057(+)$1	244	131	171	12.3827
:ggggggg!!eeeeesssssssssseeeee22ggggggg:	chr11:93454731-93455003(+)$1	272	213	253	12.3827
eecccdddd[gggggggqqqqqqqqggggggg]dddd]cc	chr1:173835343-173835583(-)$1	240	150	190	14.3306
b[bb[ggggggg[ddddqqqqqqqqdddd]ggggggg]bb	chr17:18965308-18965550(+)$1	242	159	199	15.1973
!!=========="""a^^^^^^^^^^^^^^^^^^^^^^a2	chr9:100773530-100773772(+)$1	242	9	49	11.7721

#otherMatches

#Seq PSSM
ugaccagaguucucaguaaauguuagcuGUGGAAUCUCAU	chr11:17097270-17097510(-)$1	240	23	63	13.3526
gaccgcgagcacaaacggggggagcggggcagugagcggg	chr19:49611445-49611716(+)$1	271	63	103	10.9385
GGCGCAGACUGGGAAUUCGGUUUGGAGGAAGGGUGUGCGG	chr19:2270033-2270312(+)$1	279	110	150	12.1972
GGUCAGGACCUUGGGCUGCUAUGGAGGCUGGGACUGAGGC	chr17:56409246-56409457(-)$1	211	107	147	14.3618
GAAAAUCGCCCCCGGCUUUGGCCGUGGCCGCGGGUGAGAU	chr16:2015157-2015412(+)$1	255	34	74	13.1168
AGUGUGCGCGCUUGGAGCGUGUUAGGCGAGUGCGUGCGCC	chr1:109642782-109642999(+)$1	217	138	178	14.8970
GGUUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAAG	chr14:70238205-70238473(+)$1	268	141	181	14.7925
UGAGCCUUGGGUCUCCUAAACUGAAAGGAGAUAUUAAGGU	chr11:62300140-62300427(-)$1	287	58	98	16.2251
gucugagugguUUUUCCUUCUUGAUGGCUCAAUGACAGAG	chr17:18965303-18965508(+)$1	205	127	167	14.4312
GGCGCAGACUGGGAAUUCGGUUUGGAGGAAGGGUGUGCGG	chr19:2269985-2270233(+)$1	248	158	198	12.1972
GUACUUCUCUUGUUUGGCUUACUGAUAACAGAUAAAGGGA	chr11:122929530-122929788(-)$1	258	32	72	12.1902
GCCACUGAGAGAUGAAACACAGAUCUUUGGUAAUCUGAUG	chr12:6619588-6619817(+)$1	229	86	126	14.7912
AGUGCAUGCACGUGUAUGUCUGGGAGUACAAAUGGGUGCG	chr7:98479336-98479610(+)$1	274	62	102	13.6890
UUUAGAUAGUAGGUAGAUUUUCCUUUCAUACCUCUACUCC	chr11:17096143-17096383(-)$1	240	20	60	13.6213
cuauuggguacugugcucacuaucugcauagcaggaucca	chr7:120897037-120897295(+)$1	258	121	161	11.9071
AAGGGCUUGGACUUGGGUGGCAGAGGAGGGGUCCAAGUUC	chr11:62300880-62301181(-)$1	301	79	119	18.1246
GCCGGCAGUCUGGGUACUCAGAGAUGUCGCCCAGGUGCCC	chr22:19711121-19711387(+)$1	266	178	218	15.2146
AGAGGGUGGGCCUGCUGUGGACAAUGGCAUACUCUCUUCC	chr2:97525522-97525809(-)$1	287	184	224	13.5887
UUUAUUAUUUUAUGCAGAUAUCUCCUGCUGAGUGAUUCUU	chr10:70101631-70101873(+)$1	242	46	86	11.5107
accagaaagguuuuccuuaguguuggguaaaccuuccuug	chr11:17097223-17097432(-)$1	209	54	94	11.1324
AGUGUGCGCGCUUGGAGCGUGUUAGGCGAGUGCGUGCGCC	chr1:109642773-109642982(+)$1	209	147	187	14.8970
GGGGAUCUUAGGAAGCCACAAGGAGGGCUGGGGGGCUCUU	chr17:56408718-56408967(-)$1	249	192	232	13.9954
AGCUGGGGGAAUUUGGCAUGGAAGAGCUGAGGGGCUGCAG	chr16:28847428-28847693(+)$1	265	82	122	14.4659
GCCCAAGGUAAAAAUGCCCAAGUUCAGCAUGCCUGGCUUU	chr11:62297190-62297432(-)$1	242	73	113	12.0788
GCUCGAAGGGCCCGAUGUUUCUCUAAAGGGGCCAGGAGUA	chr11:62286001-62286236(-)$1	235	163	203	11.3792
GUUAGUUAUCCCUGUCUGAAAAUCUGGACUGAGGGAAAUA	chr17:74557633-74557885(+)$1	252	96	136	13.1879
accagaaagguuuuccuuaguguuggguaaaccuuccuug	chr11:17097255-17097470(-)$1	215	92	132	11.1324
UUAUGUGCAUUCUCACGUUGGUUUCUGUGAUGUAUAAAAG	chr11:17097232-17097454(-)$1	222	132	172	13.2797
GCCUGGAGUCAGGGCCAGGGAGGCAUGGCCCCACUUGUAU	chr16:2820991-2821295(+)$1	304	156	196	13.5117
CGGGUUUAUAUCCCCAUGGGCUGAAGUGCGAUAUAAAUCG	chr19:10406575-10406898(+)$1	323	218	258	19.6001
GCGUGGGGGAGCUGGGUAUGUUUGGGUACCCCUCCUCUcc	chr2:97559878-97560136(-)$1	258	103	143	11.4396
ACGGGGACGCUGGAGUUUGAAGGUGGGGAAGUGUCUCUGG	chr11:62284257-62284578(-)$1	321	75	115	12.6075
UGGGUUUGAGCAGGUAGUAGAGAGGACUUGCCAAAGACUG	chr9:134083156-134083434(+)$1	278	72	112	13.5406
UGCUAUUCUUUAGGAAGAAGAAUUUGGACUUGAUGAAGAA	chr9:100774602-100774855(+)$1	253	87	127	12.9242
GUGCGUUUGGAAAGCAGGGUUAGGACUGGAAUUCUAAGGU	chr11:289415-289685(+)$1	270	96	136	13.7140
UCAUGGGCCCUGGGUCACCUACCCUGGGACCUGGGGAUAA	chr7:45144352-45144588(-)$1	236	26	66	11.7215
ugagagggagagaacgcggucugagugguUUUUCCUUCUU	chr17:19093316-19093602(-)$1	286	232	272	13.6527
CCCAUAUAAUAGGGAAAGGGUGGGAUUUUUUUGUGGGAAU	chr7:158424080-158424350(-)$1	270	84	124	10.7258
GAUUUCAAGGCGAAGCUGGCGGCGGAGCGGGAGCGGGUGG	chr6:111136056-111136365(-)$1	309	35	75	15.2300
GGUGGCAAAAUGCAGGUGGGAGGAGACGGUGUGAAAGUGC	chr11:62285720-62285971(-)$1	251	85	125	13.6367
GUCCAGCAGGGGUGGGGGGUUCCUGCUCUGCCCCUGCCCG	chr16:28848265-28848530(+)$1	265	8	48	17.9606
UCGCUCUGCCUUGGGUCUAGGGGGCGGCUGGAGGAGAGGA	chrX:152956440-152956741(+)$1	301	89	129	13.5741
GUCUUGGCCUCAAGUGGAACAAGGGCUCCUUGAGGCCAGC	chr6:43745813-43746070(+)$1	257	156	196	17.5973
AUGCCCAAGGUGAAAAUGCCCAAGUUCAGCAUGCCUGGCU	chr11:62290434-62290675(-)$1	241	196	236	11.1879
CUUUUUUCACCAUAGGGCUGGUUUUCCCCAUGUGUGAGGA	chr2:203142737-203143009(+)$1	272	182	222	18.0923
AGUGGUGGCGGCUAUGGAGGAGACCGAGGUGGGGGCUACG	chr17:34171875-34172138(+)$1	263	87	127	10.7123
gcacuaaggagauuuggggguggagccauucugugugugg	chr4:770460-770709(-)$1	249	61	101	15.3333
agagguggaaaaagcaguccuaaaucucugaggccacccc	chr7:119437851-119438198(-)$1	347	41	81	14.0837
GCCUGACGUGGAGCUAAAUUUGAAAAGUCCCAAAGUCAAA	chr11:62291481-62291721(-)$1	240	83	123	13.3252
UGAGCCUUGGGUCUCCUAAACUGAAAGGAGAUAUUAAGGU	chr11:62300306-62300605(-)$1	299	236	276	16.2251
GAGGUGUGCCUUUGGGGUACCGGAUCCCCCGGCCUGCCGC	chr2:133015120-133015366(-)$1	246	150	190	14.6153
cggcuuucuggcguugcuuggcugcaacugccgucagcca	chr17:19091313-19091544(+)$1	231	131	171	10.6715
CACAGUUUAUGUAGCUUACCUCCUCAAAGCAAUACACUGA	chrM:521-749(+)$1	228	53	93	11.6592
GAAAGCCUAAUCAUUUCUGGGCAAUGAUGAAAAGGUUUUA	chr11:93454813-93455057(+)$1	244	131	171	12.3827
GAAAGCCUAAUCAUUUCUGGGCAAUGAUGAAAAGGUUUUA	chr11:93454731-93455003(+)$1	272	213	253	12.3827
AGUUGUGGUUUGCUGUUAAUGGUUAAGCAGUGUACCACCA	chr1:173835343-173835583(-)$1	240	150	190	14.3306
GAGACUAGCUCGUAAACUCCGGGCCGUUUCCGGGCUGUUC	chr17:18965308-18965550(+)$1	242	159	199	15.1973
GGACUAUUUUUagaaggagaagaugaggaagacgaggacg	chr9:100773530-100773772(+)$1	242	9	49	11.7721

#DB
(((((((((((((((((........)))).))))......	chr11:17097270-17097510(-)$1	1	23	63	13.3526
(.((.((..(((...(.(......).)....)))..)).)	chr19:49611445-49611716(+)$1	1	63	103	10.9385
(.((((.(((.....(((......)))....))).)))).	chr19:2270033-2270312(+)$1	1	110	150	12.1972
(.((((..((...((((........))))))..))))..)	chr17:56409246-56409457(-)$1	1	107	147	14.3618
(((..((((((.(((((........))))).))))))..)	chr16:2015157-2015412(+)$1	1	34	74	13.1168
.(((((((((((((............))))))))))))).	chr1:109642782-109642999(+)$1	1	138	178	14.8970
(.(((((((((....(((......)))...))))))))).	chr14:70238205-70238473(+)$1	1	141	181	14.7925
..(((((((.(((((((........)))))))..))))))	chr11:62300140-62300427(-)$1	1	58	98	16.2251
((((..((.(((...((........))...))).))..))	chr17:18965303-18965508(+)$1	1	127	167	14.4312
(.((((.(((.....(((......)))....))).)))).	chr19:2269985-2270233(+)$1	1	158	198	12.1972
(.((((((((((((((............))))).))))))	chr11:122929530-122929788(-)$1	1	32	72	12.1902
((((.(.(((.((.(((........))).))..))).)))	chr12:6619588-6619817(+)$1	1	86	126	14.7912
(((((((.((..(((((........)))))..)).)))).	chr7:98479336-98479610(+)$1	1	62	102	13.6890
...((.(((.(((((((........)).))))))))))..	chr11:17096143-17096383(-)$1	1	20	60	13.6213
))))(((((.((((((.........))))))....)))))	chr7:120897037-120897295(+)$1	1	121	161	11.9071
..((((((((((((..............))))))))))))	chr11:62300880-62301181(-)$1	1	79	119	18.1246
((.((((.(((((((((........)).))))))))))).	chr22:19711121-19711387(+)$1	1	178	218	15.2146
((((((((.(((.............))).)))))))))))	chr2:97525522-97525809(-)$1	1	184	224	13.5887
...(((((((...((((.......)))).)))))))...)	chr10:70101631-70101873(+)$1	1	46	86	11.5107
(((((.(((((((.(((.......))).))))))).).))	chr11:17097223-17097432(-)$1	1	54	94	11.1324
.(((((((((((((............))))))))))))).	chr1:109642773-109642982(+)$1	1	147	187	14.8970
((((.((((....((((........))))..)))))))))	chr17:56408718-56408967(-)$1	1	192	232	13.9954
(.(((.((...((((((........))))))...)).)))	chr16:28847428-28847693(+)$1	1	82	122	14.4659
(((..((((....((((.........)))))))))))...	chr11:62297190-62297432(-)$1	1	73	113	12.0788
((((....(((((...............)))))..)))).	chr11:62286001-62286236(-)$1	1	163	203	11.3792
((((....(((((((((........))))..)))))..))	chr17:74557633-74557885(+)$1	1	96	136	13.1879
(((((.(((((((.(((.......))).))))))).).))	chr11:17097255-17097470(-)$1	1	92	132	11.1324
((.((((((...(((((........)))))))))))))))	chr11:17097232-17097454(-)$1	1	132	172	13.2797
(((((((..((((((((........))))))....))..)	chr16:2820991-2821295(+)$1	1	156	196	13.5117
(.((((((((((..(((........))).)))))))))).	chr19:10406575-10406898(+)$1	1	218	258	19.6001
(((((((((((..((((((......))))))...))))))	chr2:97559878-97560136(-)$1	1	103	143	11.4396
.((((((((((..................))))))))))(	chr11:62284257-62284578(-)$1	1	75	115	12.6075
(.(((((..((((((..........))))))...))))).	chr9:134083156-134083434(+)$1	1	72	112	13.5406
)))))(((((((..(((...........)))..)))))))	chr9:100774602-100774855(+)$1	1	87	127	12.9242
)))..(((((((..(((........)))...)))))))..	chr11:289415-289685(+)$1	1	96	136	13.7140
(.((...(((((((((.((......)))))))))))....	chr7:45144352-45144588(-)$1	1	26	66	11.7215
.((((((((((((.(((.......))).))))))))))))	chr17:19093316-19093602(-)$1	1	232	272	13.6527
(((((((..((.(((((((......))))))).))...))	chr7:158424080-158424350(-)$1	1	84	124	10.7258
..(((((..((...(((........)))....))...)))	chr6:111136056-111136365(-)$1	1	35	75	15.2300
(((((((...((((.((........))..))))....)))	chr11:62285720-62285971(-)$1	1	85	125	13.6367
(.(..((((((((((((........))))))))))))..)	chr16:28848265-28848530(+)$1	1	8	48	17.9606
((.((((.((((.((((........)))).))))))))))	chrX:152956440-152956741(+)$1	1	89	129	13.5741
((..((((((((((.((........)).))))))))))))	chr6:43745813-43746070(+)$1	1	156	196	17.5973
(.(((..((((....((((.........))))))))))).	chr11:62290434-62290675(-)$1	1	196	236	11.1879
(((((((((((((.(((........))).))).)))))))	chr2:203142737-203143009(+)$1	1	182	222	18.0923
.(((((..(.(((.(((......))).))).)..))))).	chr17:34171875-34172138(+)$1	1	87	127	10.7123
((((..((((....(((........)))))))..)))).)	chr4:770460-770709(-)$1	1	61	101	15.3333
.(.(((((....((.((........))))....)))))).	chr7:119437851-119438198(-)$1	1	41	81	14.0837
...((((.(((.(((..........))).)))..))))..	chr11:62291481-62291721(-)$1	1	83	123	13.3252
..(((((((.(((((((........)))))))..))))))	chr11:62300306-62300605(-)$1	1	236	276	16.2251
((((((.(((...((((........)))).)))....)))	chr2:133015120-133015366(-)$1	1	150	190	14.6153
.((((..(.((((((((......))))).))))..)))).	chr17:19091313-19091544(+)$1	1	131	171	10.6715
..((((.(((...((((.........)))).))).)))).	chrM:521-749(+)$1	1	53	93	11.6592
.(((((((..(((((..........)))))..))))))).	chr11:93454813-93455057(+)$1	1	131	171	12.3827
.(((((((..(((((..........)))))..))))))).	chr11:93454731-93455003(+)$1	1	213	253	12.3827
(((((((((.(((((((........))))))).)))).))	chr1:173835343-173835583(-)$1	1	150	190	14.3306
(.((.(((((((.((((........)))).))))))).))	chr17:18965308-18965550(+)$1	1	159	199	15.1973
..((((((((((...(......................).	chr9:100773530-100773772(+)$1	1	9	49	11.7721

#PSSM
c : 0.13	d : 0.12	e : 0.10	b : 0.08	: : 0.08	= : 0.06	[ : 0.05	" : 0.05	i : 0.03	# : 0.03	a : 0.03	h : 0.03	$ : 0.03	C : 0.03	g : 0.03	) : 0.01	' : 0.01	! : 0.01	
[ : 0.22	= : 0.13	e : 0.12	c : 0.12	d : 0.10	g : 0.06	# : 0.03	" : 0.03	h : 0.03	$ : 0.03	i : 0.01	) : 0.01	a : 0.01	: : 0.01	! : 0.01	
d : 0.17	= : 0.17	e : 0.15	g : 0.10	c : 0.10	[ : 0.06	i : 0.05	b : 0.05	h : 0.03	$ : 0.03	" : 0.01	a : 0.01	! : 0.01	
d : 0.22	= : 0.15	e : 0.15	g : 0.12	c : 0.08	b : 0.06	! : 0.06	i : 0.05	h : 0.03	f : 0.01	: : 0.01	
= : 0.17	d : 0.15	g : 0.13	e : 0.12	! : 0.08	[ : 0.06	i : 0.05	c : 0.05	a : 0.03	# : 0.03	b : 0.01	f : 0.01	: : 0.01	" : 0.01	h : 0.01	
d : 0.18	= : 0.18	g : 0.17	e : 0.12	! : 0.06	[ : 0.06	i : 0.05	f : 0.03	# : 0.03	b : 0.01	a : 0.01	" : 0.01	h : 0.01	
g : 0.20	= : 0.18	d : 0.13	e : 0.10	[ : 0.08	! : 0.06	i : 0.05	b : 0.05	f : 0.03	# : 0.03	c : 0.01	" : 0.01	
= : 0.18	g : 0.18	! : 0.12	c : 0.10	d : 0.08	i : 0.06	[ : 0.06	f : 0.03	b : 0.03	e : 0.03	# : 0.03	" : 0.01	a : 0.01	
= : 0.17	g : 0.17	! : 0.12	c : 0.12	d : 0.10	i : 0.06	[ : 0.05	e : 0.05	b : 0.03	f : 0.03	" : 0.03	a : 0.01	# : 0.01	
c : 0.17	= : 0.17	g : 0.13	[ : 0.10	b : 0.08	d : 0.06	i : 0.05	# : 0.05	" : 0.05	f : 0.03	e : 0.03	! : 0.03	
g : 0.17	= : 0.15	c : 0.12	" : 0.10	e : 0.08	d : 0.06	# : 0.06	f : 0.05	i : 0.05	b : 0.05	$ : 0.03	[ : 0.01	! : 0.01	
g : 0.15	= : 0.13	c : 0.10	" : 0.10	# : 0.10	e : 0.10	f : 0.06	d : 0.05	[ : 0.05	$ : 0.03	! : 0.03	b : 0.01	^ : 0.01	i : 0.01	
e : 0.17	" : 0.13	g : 0.12	= : 0.10	# : 0.08	f : 0.06	! : 0.06	c : 0.05	d : 0.03	$ : 0.03	b : 0.03	[ : 0.03	v : 0.01	^ : 0.01	i : 0.01	
d : 0.18	e : 0.13	[ : 0.10	= : 0.08	g : 0.08	f : 0.08	" : 0.06	# : 0.05	! : 0.05	$ : 0.03	v : 0.01	x : 0.01	^ : 0.01	i : 0.01	b : 0.01	c : 0.01	
c : 0.20	d : 0.17	e : 0.13	g : 0.08	f : 0.08	" : 0.05	[ : 0.05	$ : 0.03	u : 0.03	# : 0.03	w : 0.01	v : 0.01	x : 0.01	^ : 0.01	i : 0.01	= : 0.01	
c : 0.24	d : 0.18	b : 0.10	e : 0.08	g : 0.06	f : 0.06	s : 0.06	a : 0.03	u : 0.03	w : 0.01	v : 0.01	x : 0.01	^ : 0.01	i : 0.01	= : 0.01	
c : 0.24	d : 0.18	b : 0.10	e : 0.06	g : 0.06	s : 0.06	u : 0.05	f : 0.05	[ : 0.03	^ : 0.03	r : 0.01	w : 0.01	v : 0.01	x : 0.01	= : 0.01	
q : 0.48	p : 0.06	s : 0.06	c : 0.05	u : 0.05	r : 0.05	^ : 0.03	o : 0.03	a : 0.01	w : 0.01	v : 0.01	x : 0.01	f : 0.01	t : 0.01	b : 0.01	g : 0.01	d : 0.01	
q : 0.48	o : 0.10	p : 0.06	s : 0.06	u : 0.05	r : 0.05	^ : 0.03	w : 0.01	v : 0.01	x : 0.01	f : 0.01	t : 0.01	b : 0.01	g : 0.01	d : 0.01	
q : 0.48	o : 0.15	r : 0.06	p : 0.06	s : 0.06	u : 0.05	^ : 0.03	w : 0.01	v : 0.01	x : 0.01	t : 0.01	
q : 0.48	o : 0.15	r : 0.06	p : 0.06	s : 0.06	u : 0.05	^ : 0.03	w : 0.01	v : 0.01	x : 0.01	t : 0.01	
q : 0.48	o : 0.15	r : 0.06	p : 0.06	s : 0.06	u : 0.05	^ : 0.03	w : 0.01	v : 0.01	x : 0.01	t : 0.01	
q : 0.48	o : 0.15	r : 0.06	p : 0.06	s : 0.06	u : 0.05	^ : 0.03	w : 0.01	v : 0.01	x : 0.01	t : 0.01	
q : 0.48	o : 0.12	r : 0.06	p : 0.06	s : 0.06	u : 0.05	^ : 0.03	w : 0.01	v : 0.01	x : 0.01	t : 0.01	c : 0.01	e : 0.01	
q : 0.48	c : 0.12	r : 0.06	s : 0.06	u : 0.05	o : 0.05	^ : 0.03	a : 0.01	w : 0.01	v : 0.01	d : 0.01	x : 0.01	t : 0.01	e : 0.01	
c : 0.25	d : 0.13	b : 0.12	e : 0.10	f : 0.08	g : 0.06	u : 0.05	r : 0.05	^ : 0.03	] : 0.01	w : 0.01	x : 0.01	t : 0.01	= : 0.01	
c : 0.24	d : 0.17	b : 0.12	e : 0.10	f : 0.08	g : 0.06	= : 0.05	^ : 0.03	a : 0.01	u : 0.01	w : 0.01	x : 0.01	t : 0.01	r : 0.01	] : 0.01	
d : 0.17	c : 0.15	e : 0.10	] : 0.10	f : 0.08	g : 0.06	4 : 0.05	= : 0.05	3 : 0.03	^ : 0.03	u : 0.01	w : 0.01	x : 0.01	t : 0.01	i : 0.01	2 : 0.01	r : 0.01	b : 0.01	
d : 0.18	e : 0.13	g : 0.12	] : 0.12	= : 0.10	f : 0.08	4 : 0.06	3 : 0.05	^ : 0.03	c : 0.03	i : 0.01	2 : 0.01	b : 0.01	
= : 0.15	e : 0.13	g : 0.13	4 : 0.08	f : 0.08	d : 0.08	c : 0.08	] : 0.06	3 : 0.05	b : 0.03	2 : 0.03	i : 0.01	^ : 0.01	
= : 0.15	g : 0.15	d : 0.10	c : 0.10	f : 0.10	4 : 0.08	2 : 0.08	] : 0.05	e : 0.05	b : 0.03	i : 0.03	3 : 0.01	^ : 0.01	
g : 0.17	c : 0.15	= : 0.15	d : 0.12	2 : 0.10	e : 0.06	4 : 0.06	3 : 0.05	f : 0.03	i : 0.03	a : 0.01	^ : 0.01	
= : 0.15	2 : 0.13	g : 0.13	d : 0.10	c : 0.10	e : 0.06	4 : 0.05	3 : 0.05	] : 0.05	f : 0.03	i : 0.03	b : 0.03	a : 0.01	^ : 0.01	
= : 0.17	g : 0.15	d : 0.12	2 : 0.12	c : 0.10	4 : 0.06	b : 0.05	3 : 0.05	f : 0.03	i : 0.03	] : 0.03	e : 0.03	^ : 0.01	
g : 0.20	= : 0.17	d : 0.12	] : 0.06	4 : 0.06	e : 0.06	2 : 0.05	i : 0.05	b : 0.05	c : 0.05	f : 0.03	> : 0.01	3 : 0.01	^ : 0.01	
d : 0.22	= : 0.17	g : 0.15	e : 0.10	i : 0.05	b : 0.05	c : 0.05	f : 0.03	] : 0.03	3 : 0.03	4 : 0.03	> : 0.01	2 : 0.01	^ : 0.01	
d : 0.20	= : 0.17	g : 0.13	e : 0.10	b : 0.05	3 : 0.05	4 : 0.05	i : 0.03	2 : 0.03	] : 0.03	a : 0.03	c : 0.03	> : 0.01	f : 0.01	^ : 0.01	
d : 0.17	= : 0.15	e : 0.13	g : 0.12	2 : 0.10	] : 0.06	b : 0.03	i : 0.03	3 : 0.03	c : 0.03	> : 0.01	a : 0.01	0 : 0.01	4 : 0.01	h : 0.01	^ : 0.01	
e : 0.15	d : 0.13	= : 0.13	g : 0.12	c : 0.12	2 : 0.08	] : 0.03	i : 0.03	3 : 0.03	a : 0.03	> : 0.01	0 : 0.01	: : 0.01	4 : 0.01	h : 0.01	b : 0.01	
] : 0.22	e : 0.15	g : 0.10	c : 0.10	= : 0.08	: : 0.06	b : 0.03	d : 0.03	h : 0.03	2 : 0.03	> : 0.01	i : 0.01	3 : 0.01	0 : 0.01	4 : 0.01	a : 0.01	8 : 0.01	

#score	790.1062012258205
#seq	58
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_UTR_m2_run2.txt

#BEAR
:ddddqqqqqqqqdddd	chr11:129991525-129991804(+)$1	279	11	28	10.8311
iiiiiqqqqqqqqiiii	chr19:15763262-15763536(+)$1	274	210	227	11.6978
fffffqqqqqqqqffff	chr16:89980847-89981104(+)$1	257	119	136	10.7872
eeeeeqqqqqqqqeeee	chr1:16891220-16891509(-)$1	289	227	244	12.6835
eeeeeqqqqqqqqeeee	chr17:79954214-79954484(+)$1	270	174	191	12.6835
[acccqqqqqqqqccc]	chr16:15127067-15127357(+)$1	290	10	27	11.8636
gggggqqqqqqqqgggg	chr6:31507998-31508221(-)$1	223	86	103	11.6777
cc[bbqqqqqqqqbb22	chr14:103571245-103571495(+)$1	250	137	154	9.7777
eeeeeqqqqqqqqeeee	chr12:56991292-56991567(-)$1	275	233	250	12.6835
!!cccqqqqqqqqccc2	chr6:31638088-31638379(+)$1	291	64	81	11.7494
GGcccqqqqqqqqccc:	chr17:73975010-73975276(-)$1	266	199	216	9.7668
eeeeeqqqqqqqqeeee	chr3:49051298-49051599(+)$1	301	15	32	12.6835
"ddddqqqqqqqqdddd	chr20:34220613-34220899(-)$1	286	15	32	11.6419
::cccqqqqqqqqcccd	chr6:31914702-31914960(+)$1	258	51	68	10.0654
hhh[aqqqqqqqqahhh	chr14:70235844-70236083(+)$1	239	70	87	10.6461
!ddddqqqqqqqqdddd	chr2:135208253-135208536(+)$1	283	55	72	11.7530
eeeeepppppppeeeee	chr20:61916150-61916384(+)$1	234	29	46	6.3182
fffffqqqqqqqqffff	chr10:121356198-121356480(-)$1	282	129	146	10.7872
eeeeeqqqqqqqqeeee	chr16:68119393-68119671(+)$1	278	108	125	12.6835
eeeeerrrrrrrrreee	chr14:74759762-74760043(-)$1	281	31	48	8.7493
:ddddqqqqqqqqdddd	chr11:124492743-124493223(+)$1	480	306	323	10.8311
gggggqqqqqqqqgggg	chr13:26828212-26828513(+)$1	301	86	103	11.6777
dddcccqqqqqqqqccc	chr12:100934431-100934699(+)$1	268	249	266	9.8096
eeeeeqqqqqqqqeeee	chr17:36884632-36884889(+)$1	257	220	237	12.6835
eeeeerrrrrrrrreee	chr17:45016068-45016317(+)$1	249	161	178	8.7493
eeeeeqqqqqqqqeeee	chr6:24720772-24721057(-)$1	285	176	193	12.6835
=====rrrrrrrrr===	chr16:89980273-89980503(+)$1	230	99	116	7.9868
::cccqqqqqqqqccce	chr14:65569023-65569307(-)$1	284	160	177	10.2139
:ddddqqqqqqqqdddd	chr4:23796920-23797185(-)$1	265	196	213	10.8311
eeeeeqqqqqqqqeeee	chr6:160526841-160527137(+)$1	296	245	262	12.6835
d[cccrrrrrrrrrccc	chr2:36777063-36777351(+)$1	288	241	258	7.8323
[a[cccpppppppccc]	chr14:24035133-24035392(-)$1	259	57	74	5.6323
=====qqqqqqqq====	chr16:89981293-89981540(+)$1	247	46	63	11.8716
!eeeeepppppppeeee	chr17:7142507-7142845(-)$1	338	247	264	6.3668
iiiiiqqqqqqqqiiii	chr2:27720127-27720366(+)$1	239	69	86	11.6978
eeeeaqqqqqqqqa]ee	chr9:117062804-117063053(+)$1	249	61	78	12.2510
eeeeepppppppeeeee	chr5:179050506-179050764(-)$1	258	106	123	6.3182
fddddqqqqqqqqdddd	chr3:5025399-5025693(+)$1	294	199	216	11.5325
d[cccrrrrrrrrrccc	chr2:190648008-190648252(-)$1	244	189	206	7.8323

#otherMatches

#Seq PSSM
AUAGCUACGGCAUGCUG	chr11:129991525-129991804(+)$1	279	11	28	10.8311
GGGGACUUGGAUAUCUC	chr19:15763262-15763536(+)$1	274	210	227	11.6978
cgccugugugugugggu	chr16:89980847-89981104(+)$1	257	119	136	10.7872
GAUGCUUAAUUCUGUGU	chr1:16891220-16891509(-)$1	289	227	244	12.6835
UCCCUUGGAAUCUGGGG	chr17:79954214-79954484(+)$1	270	174	191	12.6835
ACGUCUCACCCAUGACA	chr16:15127067-15127357(+)$1	290	10	27	11.8636
GCCAUUGUCGACUGUGG	chr6:31507998-31508221(-)$1	223	86	103	11.6777
CUACAUCAACGCCUGCG	chr14:103571245-103571495(+)$1	250	137	154	9.7777
CCUGUAUUGUUUGAUAG	chr12:56991292-56991567(-)$1	275	233	250	12.6835
AAAGGAAAAGUAGCCUA	chr6:31638088-31638379(+)$1	291	64	81	11.7494
CCCCGAGAAAACCCGGC	chr17:73975010-73975276(-)$1	266	199	216	9.7668
UGGGGCAUUGGCACCCC	chr3:49051298-49051599(+)$1	301	15	32	12.6835
AAGGCUCCCUGGUGCUU	chr20:34220613-34220899(-)$1	286	15	32	11.6419
AUGACUUCUACUUGUCC	chr6:31914702-31914960(+)$1	258	51	68	10.0654
AGAACAGAAAAUCGUCU	chr14:70235844-70236083(+)$1	239	70	87	10.6461
GGCCUAGGAAGAAGGGC	chr2:135208253-135208536(+)$1	283	55	72	11.7530
GAGCUGUCGUGGGGCUC	chr20:61916150-61916384(+)$1	234	29	46	6.3182
CGACGACGUGAUCCGUC	chr10:121356198-121356480(-)$1	282	129	146	10.7872
GCGGCGUUGAGGAgcug	chr16:68119393-68119671(+)$1	278	108	125	12.6835
CGGCCCCCCAACCUGGC	chr14:74759762-74760043(-)$1	281	31	48	8.7493
AGCUCCCGAAGAAGAGC	chr11:124492743-124493223(+)$1	480	306	323	10.8311
UCUGUUugaguguaugg	chr13:26828212-26828513(+)$1	301	86	103	11.6777
uaugcaauguuauaugc	chr12:100934431-100934699(+)$1	268	249	266	9.8096
GACCUGUCUUUAGGGGU	chr17:36884632-36884889(+)$1	257	220	237	12.6835
UGUCUGAACUGUGAAGA	chr17:45016068-45016317(+)$1	249	161	178	8.7493
UCAAGAGCAGAUGCUUG	chr6:24720772-24721057(-)$1	285	176	193	12.6835
auguggugugggugcac	chr16:89980273-89980503(+)$1	230	99	116	7.9868
UCGGCUUGUUGUUGUCG	chr14:65569023-65569307(-)$1	284	160	177	10.2139
AGAACUUCAAAAUGUUC	chr4:23796920-23797185(-)$1	265	196	213	10.8311
GUUGAUCAACCAUUCGA	chr6:160526841-160527137(+)$1	296	245	262	12.6835
UUGGUUUUCAAUUUGCU	chr2:36777063-36777351(+)$1	288	241	258	7.8323
UCCCUGAACUCUCCAGU	chr14:24035133-24035392(-)$1	259	57	74	5.6323
cacauuugugugugugu	chr16:89981293-89981540(+)$1	247	46	63	11.8716
AUGCUGGAAGCCAUGGC	chr17:7142507-7142845(-)$1	338	247	264	6.3668
UGUUCGACUGCUAGGGC	chr2:27720127-27720366(+)$1	239	69	86	11.6978
GCUGCCAAGUACAGACA	chr9:117062804-117063053(+)$1	249	61	78	12.2510
CACGCAGAAGUCGCGUG	chr5:179050506-179050764(-)$1	258	106	123	6.3182
UUGGCAUAGGGAAGUCA	chr3:5025399-5025693(+)$1	294	199	216	11.5325
ACUGAGAACUAUUAUCA	chr2:190648008-190648252(-)$1	244	189	206	7.8323

#DB
.((((........))))	chr11:129991525-129991804(+)$1	1	11	28	10.8311
(((((........))))	chr19:15763262-15763536(+)$1	1	210	227	11.6978
(((((........))))	chr16:89980847-89981104(+)$1	1	119	136	10.7872
(((((........))))	chr1:16891220-16891509(-)$1	1	227	244	12.6835
(((((........))))	chr17:79954214-79954484(+)$1	1	174	191	12.6835
.((((........))).	chr16:15127067-15127357(+)$1	1	10	27	11.8636
(((((........))))	chr6:31507998-31508221(-)$1	1	86	103	11.6777
((.((........))..	chr14:103571245-103571495(+)$1	1	137	154	9.7777
(((((........))))	chr12:56991292-56991567(-)$1	1	233	250	12.6835
..(((........))).	chr6:31638088-31638379(+)$1	1	64	81	11.7494
))(((........))).	chr17:73975010-73975276(-)$1	1	199	216	9.7668
(((((........))))	chr3:49051298-49051599(+)$1	1	15	32	12.6835
.((((........))))	chr20:34220613-34220899(-)$1	1	15	32	11.6419
..(((........)))(	chr6:31914702-31914960(+)$1	1	51	68	10.0654
(((.(........))))	chr14:70235844-70236083(+)$1	1	70	87	10.6461
.((((........))))	chr2:135208253-135208536(+)$1	1	55	72	11.7530
(((((.......)))))	chr20:61916150-61916384(+)$1	1	29	46	6.3182
(((((........))))	chr10:121356198-121356480(-)$1	1	129	146	10.7872
(((((........))))	chr16:68119393-68119671(+)$1	1	108	125	12.6835
(((((.........)))	chr14:74759762-74760043(-)$1	1	31	48	8.7493
.((((........))))	chr11:124492743-124493223(+)$1	1	306	323	10.8311
(((((........))))	chr13:26828212-26828513(+)$1	1	86	103	11.6777
)))(((........)))	chr12:100934431-100934699(+)$1	1	249	266	9.8096
(((((........))))	chr17:36884632-36884889(+)$1	1	220	237	12.6835
(((((.........)))	chr17:45016068-45016317(+)$1	1	161	178	8.7493
(((((........))))	chr6:24720772-24721057(-)$1	1	176	193	12.6835
(((((.........)))	chr16:89980273-89980503(+)$1	1	99	116	7.9868
..(((........)))(	chr14:65569023-65569307(-)$1	1	160	177	10.2139
.((((........))))	chr4:23796920-23797185(-)$1	1	196	213	10.8311
(((((........))))	chr6:160526841-160527137(+)$1	1	245	262	12.6835
(.(((.........)))	chr2:36777063-36777351(+)$1	1	241	258	7.8323
.(.(((.......))).	chr14:24035133-24035392(-)$1	1	57	74	5.6323
(((((........))))	chr16:89981293-89981540(+)$1	1	46	63	11.8716
.(((((.......))))	chr17:7142507-7142845(-)$1	1	247	264	6.3668
(((((........))))	chr2:27720127-27720366(+)$1	1	69	86	11.6978
(((((........).))	chr9:117062804-117063053(+)$1	1	61	78	12.2510
(((((.......)))))	chr5:179050506-179050764(-)$1	1	106	123	6.3182
(((((........))))	chr3:5025399-5025693(+)$1	1	199	216	11.5325
(.(((.........)))	chr2:190648008-190648252(-)$1	1	189	206	7.8323

#PSSM
e : 0.33	: : 0.12	f : 0.07	! : 0.07	d : 0.07	i : 0.05	[ : 0.05	g : 0.05	= : 0.05	c : 0.02	G : 0.02	" : 0.02	h : 0.02	
e : 0.35	d : 0.17	i : 0.05	f : 0.05	a : 0.05	g : 0.05	: : 0.05	= : 0.05	[ : 0.05	c : 0.02	! : 0.02	G : 0.02	h : 0.02	
e : 0.35	d : 0.17	c : 0.17	i : 0.05	f : 0.05	g : 0.05	[ : 0.05	= : 0.05	h : 0.02	
e : 0.35	c : 0.23	d : 0.15	i : 0.05	f : 0.05	g : 0.05	= : 0.05	b : 0.02	[ : 0.02	
e : 0.33	c : 0.23	d : 0.15	i : 0.05	f : 0.05	g : 0.05	a : 0.05	= : 0.05	b : 0.02	
q : 0.74	r : 0.12	p : 0.05	c : 0.05	e : 0.02	
q : 0.76	r : 0.12	p : 0.10	
q : 0.76	r : 0.12	p : 0.10	
q : 0.76	r : 0.12	p : 0.10	
q : 0.76	r : 0.12	p : 0.10	
q : 0.76	r : 0.12	p : 0.10	
q : 0.76	r : 0.12	p : 0.10	
q : 0.76	r : 0.12	e : 0.05	p : 0.05	
e : 0.28	d : 0.15	c : 0.15	r : 0.12	i : 0.05	f : 0.05	g : 0.05	a : 0.05	b : 0.02	q : 0.02	= : 0.02	
e : 0.33	c : 0.23	d : 0.15	i : 0.05	f : 0.05	g : 0.05	= : 0.05	b : 0.02	h : 0.02	] : 0.02	
e : 0.35	c : 0.23	d : 0.15	i : 0.05	f : 0.05	g : 0.05	= : 0.05	2 : 0.02	h : 0.02	
e : 0.38	d : 0.17	c : 0.07	i : 0.05	f : 0.05	] : 0.05	g : 0.05	2 : 0.05	= : 0.05	: : 0.02	h : 0.02	

#score	411.01677693656677
#seq	39
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_UTR_m2_run1.txt

#BEAR
iiiiiiiiimmmmiiiiiiiii	chr19:13250242-13250501(+)$1	259	235	257	10.5999
!!bb[ddddmmmmdddd]bb22	chr17:8076672-8076904(-)$1	232	185	207	10.1083
iiiiiiiiimmmmiiiiiiiii	chr11:75111333-75111576(+)$1	243	16	38	10.5999
ccc[bb[bbmmmmbb]bb]ccc	chr3:186648354-186648607(+)$1	253	181	203	7.7716
gggg]bbbbmmmmbbggggggg	chr22:19710763-19711020(+)$1	257	177	199	8.2220
=========mmmm=========	chr4:78740390-78740673(-)$1	283	135	157	10.9196
c[gggggggmmmmgggggggcc	chr20:1165127-1165384(-)$1	257	116	138	9.8403
gggggg[ccclllcccgggggg	chr7:5460950-5461221(-)$1	271	164	186	7.7468
iiiiiiiiimmmmiiiiiiiii	chr6:7107966-7108225(+)$1	259	185	207	10.5999
ccbb[ddddmmmmdddd]bb]c	chr22:50016658-50016910(-)$1	252	5	27	10.0785
b[bbbb[bbmmmmbbbb]bb33	chr12:123997699-123998012(-)$1	313	60	82	8.0859
ff[a[ddddmmmmdddd]a]ff	chr19:2270204-2270528(+)$1	324	111	133	10.0881
fff[a[cccmmmmccc]a]fff	chr2:200323096-200323381(-)$1	285	140	162	8.9499
ccc!!ddddmmmmdddd]ccc:	chrX:152953869-152954106(+)$1	237	170	192	9.5339
e####ddddmmmmdddd333ee	chrX:153589595-153589864(-)$1	269	174	196	9.8544
"""cccabbmmmmbb]a]ccc]	chr22:19710374-19710612(+)$1	238	102	124	9.2657
!!gggggggooooooggggggg	chr6:167369854-167370160(-)$1	306	126	148	7.4675
iiiiiiiiinnnnniiiiiiii	chr11:75111377-75111612(+)$1	235	120	142	7.2629
[a!!eeeeemmmmeeeee22a]	chr17:80231340-80231633(-)$1	293	147	169	8.7395
ccc[eeeeellleeeeeccca3	chr22:20068093-20068356(+)$1	263	64	86	6.4881
d[bb[ddddmmmmdddd]bb33	chr11:290512-290764(+)$1	252	24	46	10.2546
dddd!!cccmmmmccc]ddddc	chr12:123997923-123998181(-)$1	258	145	167	8.0982
"""a[ddddmmmmdddd]a333	chr19:54971699-54971951(+)$1	252	163	185	11.1914
bb[a[ddddmmmmdddd]a]bb	chr7:150777528-150777804(-)$1	276	64	86	9.6096
!hhhhhhhhmmmmhhhhhhhhc	chr17:75212398-75212677(+)$1	279	130	152	7.9443
bgggggggnnnnnggggggghh	chr15:70389958-70390288(-)$1	330	44	66	5.9333
fffff[cccmmmmcccffffff	chr2:97534075-97534308(-)$1	233	1	23	8.2270
cc!!eeeeemmmmeeeee22cc	chr19:52729134-52729495(+)$1	361	38	60	8.6315
:ccc[ddddmmmmdddd]ccc:	chr19:1881804-1882101(-)$1	297	51	73	8.4817
iiiiiiiiimmmmiiiiiiiii	chr12:123998577-123998824(-)$1	247	69	91	10.5999
bbbb!!cccmmmmccc22bb]b	chr3:184079460-184079790(+)$1	330	39	61	8.6987
!!bb[ddddmmmmdddd]bb22	chr17:8076657-8076872(-)$1	215	153	175	10.1083
gg####cccmmmmccc4444gg	chr22:21983344-21983575(-)$1	231	32	54	9.8068
[eeeee[bbmmmmbbeeeee]d	chr19:2425550-2425840(-)$1	290	186	208	7.6084

#otherMatches

#Seq PSSM
GCCCAGCUCCUGGgggcugggc	chr19:13250242-13250501(+)$1	259	235	257	10.5999
AACAUAGCUAUGAAGUUCUGAC	chr17:8076672-8076904(-)$1	232	185	207	10.1083
AGUACAGUGUCUUUGCUGUGCU	chr11:75111333-75111576(+)$1	243	16	38	10.5999
GCCGAUACCGACCGGCGUGGGC	chr3:186648354-186648607(+)$1	253	181	203	7.7716
GCAGCGCGCGUCCGCGCGGCCU	chr22:19710763-19711020(+)$1	257	177	199	8.2220
GCGCGCGCGUGUUUGUGUGUGU	chr4:78740390-78740673(-)$1	283	135	157	10.9196
uguacgcgcgugugcgugugAC	chr20:1165127-1165384(-)$1	257	116	138	9.8403
ccugugcgccccgggccgcggg	chr7:5460950-5461221(-)$1	271	164	186	7.7468
UGCGGAGUUGAUGAACUUUGCA	chr6:7107966-7108225(+)$1	259	185	207	10.5999
GGGGCCGGCCUCUGCCGUCCAC	chr22:50016658-50016910(-)$1	252	5	27	10.0785
CCGCCCACCUCUCGGGGAGCCA	chr12:123997699-123998012(-)$1	313	60	82	8.0859
GUGCGCUGCGGGAGCGGGGAGC	chr19:2270204-2270528(+)$1	324	111	133	10.0881
GGCCCCGGUGCCCGCCUGCGCC	chr2:200323096-200323381(-)$1	285	140	162	8.9499
AGAGCGCCGAGAACGGCAUCUA	chrX:152953869-152954106(+)$1	237	170	192	9.5339
ACCAAGCCUAGCAAGGUAAUUG	chrX:153589595-153589864(-)$1	269	174	196	9.8544
UAUCCCCAGACGCCUAGCGGGC	chr22:19710374-19710612(+)$1	238	102	124	9.2657
AACGCGACUGACCGUGGUCGUG	chr6:167369854-167370160(-)$1	306	126	148	7.4675
CUGUGCUGCGUUCUGUGGCACA	chr11:75111377-75111612(+)$1	235	120	142	7.2629
GGGACCGGUAGGGGCCGGAGCA	chr17:80231340-80231633(-)$1	293	147	169	8.7395
GGCUCCUCUCCCGGAGGGCCCG	chr22:20068093-20068356(+)$1	263	64	86	6.4881
CAGCCUUCUCCCCAGAAAGCCC	chr11:290512-290764(+)$1	252	24	46	10.2546
UCCUACGGCUGCCGCCCAGGAA	chr12:123997923-123998181(-)$1	258	145	167	8.0982
AAUGGGGGGGCCUCCCCGCUCG	chr19:54971699-54971951(+)$1	252	163	185	11.1914
GAGGGCAGCGGGAGCUGGUGUU	chr7:150777528-150777804(-)$1	276	64	86	9.6096
uagUAGCGCGUCUGUGCUGCUU	chr17:75212398-75212677(+)$1	279	130	152	7.9443
GAACUGCUCUCGCGGCAGUUCA	chr15:70389958-70390288(-)$1	330	44	66	5.9333
GGGCCUCGGGAAGCUGGGCCCC	chr2:97534075-97534308(-)$1	233	1	23	8.2270
AGAGAGGGCUCUGGUUCUGAUU	chr19:52729134-52729495(+)$1	361	38	60	8.6315
AGAGGUGGUGAUCGCCAGCUCA	chr19:1881804-1882101(-)$1	297	51	73	8.4817
uggggucugaucuuagacccca	chr12:123998577-123998824(-)$1	247	69	91	10.5999
CCGGAGGGGACGGCCCAGCCAG	chr3:184079460-184079790(+)$1	330	39	61	8.6987
AACAUAGCUAUGAAGUUCUGAC	chr17:8076657-8076872(-)$1	215	153	175	10.1083
GGAGUAGGGGAAGUUCGAUGCC	chr22:21983344-21983575(-)$1	231	32	54	9.8068
GUGGAGUGGAAAUUCCUCCAGA	chr19:2425550-2425840(-)$1	290	186	208	7.6084

#DB
(((((((((....)))))))))	chr19:13250242-13250501(+)$1	1	235	257	10.5999
..((.((((....)))).))..	chr17:8076672-8076904(-)$1	1	185	207	10.1083
(((((((((....)))))))))	chr11:75111333-75111576(+)$1	1	16	38	10.5999
(((.((.((....)).)).)))	chr3:186648354-186648607(+)$1	1	181	203	7.7716
)))).))((....))(((((((	chr22:19710763-19711020(+)$1	1	177	199	8.2220
(((((((((....)))))))))	chr4:78740390-78740673(-)$1	1	135	157	10.9196
(.(((((((....)))))))))	chr20:1165127-1165384(-)$1	1	116	138	9.8403
((((((.(((...)))))))))	chr7:5460950-5461221(-)$1	1	164	186	7.7468
(((((((((....)))))))))	chr6:7107966-7108225(+)$1	1	185	207	10.5999
((((.((((....)))).)).)	chr22:50016658-50016910(-)$1	1	5	27	10.0785
(.((((.((....)))).))..	chr12:123997699-123998012(-)$1	1	60	82	8.0859
((.(.((((....)))).).))	chr19:2270204-2270528(+)$1	1	111	133	10.0881
(((.(.(((....))).).)))	chr2:200323096-200323381(-)$1	1	140	162	8.9499
(((..((((....)))).))).	chrX:152953869-152954106(+)$1	1	170	192	9.5339
(....((((....))))...))	chrX:153589595-153589864(-)$1	1	174	196	9.8544
...((((((....)).).))).	chr22:19710374-19710612(+)$1	1	102	124	9.2657
..(((((((......)))))))	chr6:167369854-167370160(-)$1	1	126	148	7.4675
(((((((((.....))))))))	chr11:75111377-75111612(+)$1	1	120	142	7.2629
.(..(((((....)))))..).	chr17:80231340-80231633(-)$1	1	147	169	8.7395
(((.(((((...))))))))).	chr22:20068093-20068356(+)$1	1	64	86	6.4881
(.((.((((....)))).))..	chr11:290512-290764(+)$1	1	24	46	10.2546
((((..(((....))).))))(	chr12:123997923-123998181(-)$1	1	145	167	8.0982
...(.((((....)))).)...	chr19:54971699-54971951(+)$1	1	163	185	11.1914
((.(.((((....)))).).))	chr7:150777528-150777804(-)$1	1	64	86	9.6096
.((((((((....)))))))))	chr17:75212398-75212677(+)$1	1	130	152	7.9443
)(((((((.....)))))))((	chr15:70389958-70390288(-)$1	1	44	66	5.9333
(((((.(((....)))))))))	chr2:97534075-97534308(-)$1	1	1	23	8.2270
((..(((((....)))))..))	chr19:52729134-52729495(+)$1	1	38	60	8.6315
.(((.((((....)))).))).	chr19:1881804-1882101(-)$1	1	51	73	8.4817
(((((((((....)))))))))	chr12:123998577-123998824(-)$1	1	69	91	10.5999
((((..(((....)))..)).)	chr3:184079460-184079790(+)$1	1	39	61	8.6987
..((.((((....)))).))..	chr17:8076657-8076872(-)$1	1	153	175	10.1083
((....(((....)))....))	chr22:21983344-21983575(-)$1	1	32	54	9.8068
.(((((.((....))))))).)	chr19:2425550-2425840(-)$1	1	186	208	7.6084

#PSSM
c : 0.17	i : 0.14	! : 0.11	b : 0.11	g : 0.08	f : 0.08	" : 0.05	[ : 0.05	d : 0.05	= : 0.02	e : 0.02	: : 0.02	
c : 0.17	i : 0.14	g : 0.11	! : 0.08	[ : 0.08	f : 0.08	" : 0.05	b : 0.05	= : 0.02	# : 0.02	a : 0.02	d : 0.02	h : 0.02	e : 0.02	
b : 0.17	i : 0.14	g : 0.14	c : 0.11	[ : 0.05	f : 0.05	# : 0.05	" : 0.05	! : 0.05	= : 0.02	d : 0.02	h : 0.02	e : 0.02	
b : 0.17	i : 0.14	g : 0.14	[ : 0.08	a : 0.08	! : 0.08	# : 0.05	c : 0.05	= : 0.02	d : 0.02	h : 0.02	f : 0.02	e : 0.02	
[ : 0.23	i : 0.14	g : 0.11	e : 0.11	! : 0.08	b : 0.05	# : 0.05	] : 0.02	= : 0.02	a : 0.02	c : 0.02	h : 0.02	f : 0.02	
d : 0.29	i : 0.14	g : 0.11	e : 0.11	b : 0.08	[ : 0.05	! : 0.05	= : 0.02	c : 0.02	h : 0.02	# : 0.02	
d : 0.29	i : 0.14	c : 0.14	[ : 0.11	g : 0.08	e : 0.08	b : 0.02	= : 0.02	a : 0.02	h : 0.02	
d : 0.29	c : 0.17	i : 0.14	b : 0.14	g : 0.08	e : 0.08	= : 0.02	h : 0.02	
d : 0.29	c : 0.17	i : 0.14	b : 0.14	e : 0.08	g : 0.05	= : 0.02	h : 0.02	n : 0.02	
m : 0.85	n : 0.05	c : 0.02	o : 0.02	l : 0.02	
m : 0.85	l : 0.05	n : 0.05	o : 0.02	
m : 0.85	l : 0.05	n : 0.05	o : 0.02	
m : 0.85	n : 0.05	l : 0.02	o : 0.02	e : 0.02	
d : 0.29	c : 0.17	b : 0.14	i : 0.11	e : 0.08	g : 0.05	= : 0.02	o : 0.02	n : 0.02	h : 0.02	
d : 0.29	c : 0.17	i : 0.14	b : 0.14	e : 0.08	g : 0.05	= : 0.02	o : 0.02	h : 0.02	
d : 0.29	c : 0.17	i : 0.14	g : 0.11	e : 0.11	] : 0.05	= : 0.02	b : 0.02	h : 0.02	
d : 0.29	i : 0.14	g : 0.14	e : 0.11	b : 0.05	] : 0.05	= : 0.02	a : 0.02	h : 0.02	f : 0.02	2 : 0.02	4 : 0.02	
] : 0.32	i : 0.14	g : 0.14	e : 0.08	b : 0.02	= : 0.02	a : 0.02	3 : 0.02	c : 0.02	d : 0.02	h : 0.02	f : 0.02	2 : 0.02	4 : 0.02	
b : 0.17	i : 0.14	g : 0.14	c : 0.11	a : 0.08	] : 0.05	2 : 0.05	= : 0.02	3 : 0.02	d : 0.02	h : 0.02	f : 0.02	4 : 0.02	e : 0.02	
b : 0.17	i : 0.14	c : 0.14	g : 0.14	] : 0.05	f : 0.05	3 : 0.05	2 : 0.05	= : 0.02	d : 0.02	h : 0.02	4 : 0.02	e : 0.02	
c : 0.17	i : 0.14	g : 0.11	] : 0.08	3 : 0.08	f : 0.08	2 : 0.05	a : 0.05	h : 0.05	= : 0.02	e : 0.02	d : 0.02	b : 0.02	
c : 0.17	i : 0.14	g : 0.11	3 : 0.11	f : 0.08	2 : 0.05	: : 0.05	] : 0.05	b : 0.05	= : 0.02	e : 0.02	h : 0.02	d : 0.02	

#score	307.4182009489649
#seq	34
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_CDS_m3_run1.txt

#BEAR
ccc[eeeeeooooooeeeee]	chr17:7215985-7216256(-)$1	271	210	231	12.5554
eee:eeeeeooooooeeeeee	chr7:65557443-65557671(+)$1	228	86	107	11.0999
ccccc[cccooooooccc]cc	chr4:187209623-187209934(+)$1	311	98	119	12.6923
eeeee[cccooooooccc]ee	chr6:31748115-31748356(-)$1	241	79	100	12.8465
ccc[a[cccooooooccc]a]	chr22:38471035-38471307(+)$1	272	131	152	13.0461
###eeeeeaooooooa]eeee	chr21:45223345-45223596(+)$1	251	27	48	12.2283
eeeee[cccooooooccceee	chr20:62572054-62572306(-)$1	252	141	162	12.7252
gggggg!!aooooooa22ggg	chr19:39959648-39959913(+)$1	265	11	32	12.1012
gggggddddoooooodddd]g	chr11:64536407-64536640(-)$1	233	186	207	11.1237
###ccc[bboooooobb]ccc	chr14:68050409-68050699(+)$1	290	139	160	11.5934
ee[bb!!bboooooobb]bb]	chr4:83740152-83740422(-)$1	270	132	153	11.3221
ccc[eeeeeooooooeeeee]	chr17:40269595-40269820(-)$1	225	124	145	12.5554
[dddd[cccooooooccc]dd	chr5:176734395-176734660(-)$1	265	108	129	12.0485
dddffffffooooooffffff	chr1:1325546-1325820(-)$1	274	20	41	10.9241
cc[bb[a[aooooooa]a]bb	chr3:184104746-184104992(+)$1	246	161	182	11.6535
ccccc!!bboooooobb22cc	chr16:67863651-67863918(-)$1	267	37	58	11.9886
bb!!ccc[aooooooaccc33	chr5:176884958-176885218(-)$1	260	125	146	12.1305
:eeeee[bboooooobb]eee	chr11:71948140-71948398(+)$1	258	12	33	11.2746
e!!ffffffooooooffffff	chr11:71208486-71208756(+)$1	270	139	160	11.2797
[bb[bbcccooooooccc]bb	chr17:61894968-61895322(+)$1	354	297	318	11.3723
eeee[ddddooooooddddee	chr6:41756882-41757157(+)$1	275	156	177	11.1892
dd[bb"""aooooooa333bb	chr11:800074-800338(-)$1	264	16	37	11.5085
abb[eeeeeooooooeeeee]	chr1:1229796-1230097(-)$1	301	73	94	12.1198
=========oooooo======	chr19:15508243-15508535(-)$1	292	255	276	12.6286
"""ffffffooooooffffff	chr17:4797247-4797486(+)$1	239	4	25	11.1359
"bb[eeeeeooooooeeeeeb	chr19:42409237-42409505(+)$1	268	86	107	11.7343
ccccc[cccoooooocccccc	chr19:47223699-47224076(-)$1	377	282	303	12.4291
ffffeeeeeooooooeeeee:	chr19:18543693-18543952(+)$1	259	70	91	10.9128
:eeeee[bboooooobb]eee	chr2:242169147-242169397(-)$1	250	144	165	11.2746
iiiiiiiiiooooooiiiiii	chr21:47423210-47423467(+)$1	257	8	29	12.1509
eeeeeeeeeooooooeeeee:	chr20:39795057-39795295(+)$1	238	123	144	11.2144
bb[ccc[bboooooobbccc]	chr19:47885197-47885516(+)$1	319	270	291	11.6000
[bb"""cccooooooccc]bb	chr12:113730981-113731227(+)$1	246	8	29	11.8879
hhhh"""bboooooobb22hh	chr22:29907028-29907387(-)$1	359	66	87	10.9069
c[gggggggoooooogggggg	chrY:21868377-21868625(-)$1	248	166	187	12.1697
bb####cccooooooccc666	chr3:52558359-52558632(-)$1	273	170	191	10.3879
eeee!!cccooooooccc22e	chr1:3396965-3397259(+)$1	294	112	133	12.2329
ffff[bb[aooooooa]bb]f	chr5:176737341-176737646(-)$1	305	236	257	10.3958
Dffffffbboooooobb]fff	chr11:709273-709521(+)$1	248	43	64	10.2954
!dddd!!bboooooobb22dd	chr17:80900221-80900473(+)$1	252	52	73	11.3599
''ccc[cccooooooccc]cc	chr3:48663550-48663826(-)$1	276	91	112	11.3354
[bb[bb!!aooooooa22bb]	chr2:234112671-234113013(+)$1	342	302	323	10.8728
ddddeeeeeooooooeeeee3	chr16:1817466-1817712(+)$1	246	168	189	11.8004
fff[eeeeeooooooeeeee]	chr19:1085886-1086188(+)$1	302	47	68	12.2020
eee"""cccooooooccceee	chr19:2233777-2234033(-)$1	256	2	23	12.6320
ee!!eeeeeooooooeeeeee	chr17:73830437-73830705(-)$1	268	207	228	12.4124
eeeee[cccooooooccc]ee	chr1:1231122-1231375(-)$1	253	24	45	12.8465
cc!!eeeeeooooooeeeee2	chr3:48453778-48454019(-)$1	241	56	77	12.3555
hhhhh[cccooooooccc]hh	chr14:51376602-51376852(-)$1	250	175	196	11.6431
ccgggggggoooooogggggg	chr16:70515896-70516179(-)$1	283	194	215	12.1998
eeeffffffooooooffffff	chr9:131373961-131374220(+)$1	259	139	160	11.1531
ccc[eeeeeooooooeeeee]	chr19:13218320-13218561(-)$1	241	212	233	12.5554
eeeee!!bboooooobb22ee	chr16:72142106-72142380(+)$1	274	105	126	12.1428
ccc!!ddddoooooodddd22	chr14:21484873-21485211(-)$1	338	55	76	10.9885
d[eeeee[aooooooa]eeee	chr3:49721655-49721887(-)$1	232	131	152	12.2935
ddgggggggoooooogggggg	chr22:32012884-32013118(+)$1	234	109	130	12.0010
ff[acccbboooooobb22cc	chr3:48605422-48605654(-)$1	232	50	71	11.5066
=========oooooo======	chr20:61460175-61460387(+)$1	212	28	49	12.6286
ddd!!ddddoooooodddddd	chr11:67816447-67816686(+)$1	239	50	71	10.8288

#otherMatches

#Seq PSSM
CCCCCACCCCAUCGUGGGUGA	chr17:7215985-7216256(-)$1	271	210	231	12.5554
UCCCUGGCACCCAGAUGCCAU	chr7:65557443-65557671(+)$1	228	86	107	11.0999
UGGUCGAGUACGUGGACUGGA	chr4:187209623-187209934(+)$1	311	98	119	12.6923
GCCACCAAGUUUGCCCUUCGU	chr6:31748115-31748356(-)$1	241	79	100	12.8465
AGGGUGCGUGGGAGGACGGAG	chr22:38471035-38471307(+)$1	272	131	152	13.0461
GGGUCUUGCUGUUUUGUCAGG	chr21:45223345-45223596(+)$1	251	27	48	12.2283
GUGCUAUGCGGGGAAGCAGGU	chr20:62572054-62572306(-)$1	252	141	162	12.7252
GGGCUGUUGCACUGACCUCGG	chr19:39959648-39959913(+)$1	265	11	32	12.1012
UGUGCAGGACAACUUUUCUGG	chr11:64536407-64536640(-)$1	233	186	207	11.1237
ACAGGUUCCACCCCAGGCGCU	chr14:68050409-68050699(+)$1	290	139	160	11.5934
GACCUCUGCUUUCAUGCCAGU	chr4:83740152-83740422(-)$1	270	132	153	11.3221
GGUGGGCAGCCCGACCUGCUG	chr17:40269595-40269820(-)$1	225	124	145	12.5554
GUGCCAGGCCCACUUGCCAGG	chr5:176734395-176734660(-)$1	265	108	129	12.0485
UUUGGCCAGAAACACCUGGUU	chr1:1325546-1325820(-)$1	274	20	41	10.9241
GGUGCGUGCAGGGUGGGAGGC	chr3:184104746-184104992(+)$1	246	161	182	11.6535
CCCUUACACGAUGGAGUUGAA	chr16:67863651-67863918(-)$1	267	37	58	11.9886
CCAAUGGCGAGACCACCCAGA	chr5:176884958-176885218(-)$1	260	125	146	12.1305
UGCUUCCACACCCAGGUUGAA	chr11:71948140-71948398(+)$1	258	12	33	11.2746
GCAUGUGGAGACACAUCUGCA	chr11:71208486-71208756(+)$1	270	139	160	11.2797
CCCUGUGACCUACCCGUCUGC	chr17:61894968-61895322(+)$1	354	297	318	11.3723
CCUCAUGGCACCUCAGCCAGG	chr6:41756882-41757157(+)$1	275	156	177	11.1892
GGAGUGGGUGAGGGGAGAGGC	chr11:800074-800338(-)$1	264	16	37	11.5085
CGCCCCCUCCCCACAGAGGGU	chr1:1229796-1230097(-)$1	301	73	94	12.1198
CCUGAUUUUCGGUGCAGGGUC	chr19:15508243-15508535(-)$1	292	255	276	12.6286
CCUGGAGGGGCCCCACCUUCC	chr17:4797247-4797486(+)$1	239	4	25	11.1359
CAGCUGGUGUGCUCUCAUCAC	chr19:42409237-42409505(+)$1	268	86	107	11.7343
AGGUGAGGGCAGAAACCCCGC	chr19:47223699-47224076(-)$1	377	282	303	12.4291
CCCUUCUGGUCUCCCCCAGAU	chr19:18543693-18543952(+)$1	259	70	91	10.9128
GAGAAGGUCAGAUGCGGGCUU	chr2:242169147-242169397(-)$1	250	144	165	11.2746
CUGGGGAGCUUAGACGCUCUC	chr21:47423210-47423467(+)$1	257	8	29	12.1509
GGGCCUUCCUGGUGCGGAAGC	chr20:39795057-39795295(+)$1	238	123	144	11.2144
GCCCUGUGGUCCUGUCCCAGU	chr19:47885197-47885516(+)$1	319	270	291	11.6000
GAGAAGUGGGAGACGCCAACU	chr12:113730981-113731227(+)$1	246	8	29	11.8879
AGGUAGUGCUGAGAUGCUGGC	chr22:29907028-29907387(-)$1	359	66	87	10.9069
CCGGGCUCCCCUGGAGGAGCU	chrY:21868377-21868625(-)$1	248	166	187	12.1697
GGCCCUCAGCCCCUCCUGCCC	chr3:52558359-52558632(-)$1	273	170	191	10.3879
UCAUCACCAGCCGUGUGGCCG	chr1:3396965-3397259(+)$1	294	112	133	12.2329
CGCCCGGACUGGCUUGCCCUG	chr5:176737341-176737646(-)$1	305	236	257	10.3958
UCUGUCCACCCAGGUGUGGGA	chr11:709273-709521(+)$1	248	43	64	10.2954
AUGGUGUGUGUUGGAGCUGAC	chr17:80900221-80900473(+)$1	252	52	73	11.3599
CAAGAAGCAUCUCUUUGCCUC	chr3:48663550-48663826(-)$1	276	91	112	11.3354
AUCGUGCUCACCAAAGCCCAG	chr2:234112671-234113013(+)$1	342	302	323	10.8728
GGGUGUCCAUCCGCCUGGACU	chr16:1817466-1817712(+)$1	246	168	189	11.8004
CCCCCCAUGAGGCUCCGUGGC	chr19:1085886-1086188(+)$1	302	47	68	12.2020
UCUACAGGAACGAAAUCCGGA	chr19:2233777-2234033(-)$1	256	2	23	12.6320
CAGCUGCAGAACACGCUGCAU	chr17:73830437-73830705(-)$1	268	207	228	12.4124
GGGGGCACAGCCUCAUGUUCC	chr1:1231122-1231375(-)$1	253	24	45	12.8465
CUCACCGUGGCACUGCAUGGG	chr3:48453778-48454019(-)$1	241	56	77	12.3555
GGGGAAGAGAACCUGUUCAUC	chr14:51376602-51376852(-)$1	250	175	196	11.6431
GGCCCUAGGGAUCCACUUAGG	chr16:70515896-70516179(-)$1	283	194	215	12.1998
GCCGGCAGUGAGGAUGCUGUC	chr9:131373961-131374220(+)$1	259	139	160	11.1531
ACAGACAUGGAAGCACAUGUG	chr19:13218320-13218561(-)$1	241	212	233	12.5554
GUGGAAGAACAAUAAUUACUC	chr16:72142106-72142380(+)$1	274	105	126	12.1428
GGCAACAGGAAGGGGCCUGGG	chr14:21484873-21485211(-)$1	338	55	76	10.9885
GGCCUGUGAGGUUGGUGGCAG	chr3:49721655-49721887(-)$1	232	131	152	12.2935
GACCUUGAGGCUGAACUUGAG	chr22:32012884-32013118(+)$1	234	109	130	12.0010
GGGAUCCCCAGGAAAGGAUGG	chr3:48605422-48605654(-)$1	232	50	71	11.5066
GGGGCUGGAGGGGAGUUCGGC	chr20:61460175-61460387(+)$1	212	28	49	12.6286
UGGCAGGCCAGAGUGGGCCCC	chr11:67816447-67816686(+)$1	239	50	71	10.8288

#DB
(((.(((((......))))).	chr17:7215985-7216256(-)$1	1	210	231	12.5554
))).(((((......)))))(	chr7:65557443-65557671(+)$1	1	86	107	11.0999
))(((.(((......))).))	chr4:187209623-187209934(+)$1	1	98	119	12.6923
(((((.(((......))).))	chr6:31748115-31748356(-)$1	1	79	100	12.8465
(((.(.(((......))).).	chr22:38471035-38471307(+)$1	1	131	152	13.0461
...((((((......).))))	chr21:45223345-45223596(+)$1	1	27	48	12.2283
(((((.(((......))))))	chr20:62572054-62572306(-)$1	1	141	162	12.7252
((((((..(......)..)))	chr19:39959648-39959913(+)$1	1	11	32	12.1012
(((((((((......)))).)	chr11:64536407-64536640(-)$1	1	186	207	11.1237
...(((.((......)).)))	chr14:68050409-68050699(+)$1	1	139	160	11.5934
((.((..((......)).)).	chr4:83740152-83740422(-)$1	1	132	153	11.3221
(((.(((((......))))).	chr17:40269595-40269820(-)$1	1	124	145	12.5554
.((((.(((......))).))	chr5:176734395-176734660(-)$1	1	108	129	12.0485
(((((((((......))))))	chr1:1325546-1325820(-)$1	1	20	41	10.9241
((.((.(.(......).).))	chr3:184104746-184104992(+)$1	1	161	182	11.6535
(((((..((......))..))	chr16:67863651-67863918(-)$1	1	37	58	11.9886
((..(((.(......))))..	chr5:176884958-176885218(-)$1	1	125	146	12.1305
.(((((.((......)).)))	chr11:71948140-71948398(+)$1	1	12	33	11.2746
(..((((((......))))))	chr11:71208486-71208756(+)$1	1	139	160	11.2797
.((.(((((......))).))	chr17:61894968-61895322(+)$1	1	297	318	11.3723
((((.((((......))))))	chr6:41756882-41757157(+)$1	1	156	177	11.1892
((.((...(......)...))	chr11:800074-800338(-)$1	1	16	37	11.5085
(((.(((((......))))).	chr1:1229796-1230097(-)$1	1	73	94	12.1198
(((((((((......))))))	chr19:15508243-15508535(-)$1	1	255	276	12.6286
...((((((......))))))	chr17:4797247-4797486(+)$1	1	4	25	11.1359
.((.(((((......))))))	chr19:42409237-42409505(+)$1	1	86	107	11.7343
(((((.(((......))))))	chr19:47223699-47224076(-)$1	1	282	303	12.4291
))))(((((......))))).	chr19:18543693-18543952(+)$1	1	70	91	10.9128
.(((((.((......)).)))	chr2:242169147-242169397(-)$1	1	144	165	11.2746
(((((((((......))))))	chr21:47423210-47423467(+)$1	1	8	29	12.1509
))))(((((......))))).	chr20:39795057-39795295(+)$1	1	123	144	11.2144
((.(((.((......))))).	chr19:47885197-47885516(+)$1	1	270	291	11.6000
.((...(((......))).))	chr12:113730981-113731227(+)$1	1	8	29	11.8879
((((...((......))..))	chr22:29907028-29907387(-)$1	1	66	87	10.9069
(.(((((((......))))))	chrY:21868377-21868625(-)$1	1	166	187	12.1697
((....(((......)))...	chr3:52558359-52558632(-)$1	1	170	191	10.3879
((((..(((......)))..)	chr1:3396965-3397259(+)$1	1	112	133	12.2329
((((.((.(......).)).)	chr5:176737341-176737646(-)$1	1	236	257	10.3958
(((((((((......)).)))	chr11:709273-709521(+)$1	1	43	64	10.2954
.((((..((......))..))	chr17:80900221-80900473(+)$1	1	52	73	11.3599
..(((.(((......))).))	chr3:48663550-48663826(-)$1	1	91	112	11.3354
.((.((..(......)..)).	chr2:234112671-234113013(+)$1	1	302	323	10.8728
(((((((((......))))).	chr16:1817466-1817712(+)$1	1	168	189	11.8004
(((.(((((......))))).	chr19:1085886-1086188(+)$1	1	47	68	12.2020
(((...(((......))))))	chr19:2233777-2234033(-)$1	1	2	23	12.6320
((..(((((......))))))	chr17:73830437-73830705(-)$1	1	207	228	12.4124
(((((.(((......))).))	chr1:1231122-1231375(-)$1	1	24	45	12.8465
((..(((((......))))).	chr3:48453778-48454019(-)$1	1	56	77	12.3555
(((((.(((......))).))	chr14:51376602-51376852(-)$1	1	175	196	11.6431
(((((((((......))))))	chr16:70515896-70516179(-)$1	1	194	215	12.1998
(((((((((......))))))	chr9:131373961-131374220(+)$1	1	139	160	11.1531
(((.(((((......))))).	chr19:13218320-13218561(-)$1	1	212	233	12.5554
(((((..((......))..))	chr16:72142106-72142380(+)$1	1	105	126	12.1428
(((..((((......))))..	chr14:21484873-21485211(-)$1	1	55	76	10.9885
(.(((((.(......).))))	chr3:49721655-49721887(-)$1	1	131	152	12.2935
(((((((((......))))))	chr22:32012884-32013118(+)$1	1	109	130	12.0010
((.((((((......))..))	chr3:48605422-48605654(-)$1	1	50	71	11.5066
(((((((((......))))))	chr20:61460175-61460387(+)$1	1	28	49	12.6286
(((..((((......))))))	chr11:67816447-67816686(+)$1	1	50	71	10.8288

#PSSM
e : 0.22	c : 0.20	d : 0.10	[ : 0.06	f : 0.06	b : 0.05	# : 0.03	g : 0.03	: : 0.03	= : 0.03	" : 0.03	h : 0.03	a : 0.01	i : 0.01	D : 0.01	! : 0.01	' : 0.01	
e : 0.23	c : 0.18	b : 0.13	d : 0.11	f : 0.08	# : 0.03	g : 0.03	= : 0.03	h : 0.03	[ : 0.03	! : 0.01	" : 0.01	i : 0.01	' : 0.01	
e : 0.22	c : 0.15	g : 0.08	[ : 0.08	d : 0.08	b : 0.08	! : 0.06	f : 0.06	# : 0.05	= : 0.03	h : 0.03	" : 0.01	i : 0.01	
e : 0.18	[ : 0.15	f : 0.11	c : 0.10	g : 0.08	! : 0.08	b : 0.05	d : 0.05	= : 0.03	" : 0.03	h : 0.03	: : 0.01	i : 0.01	# : 0.01	a : 0.01	
e : 0.33	c : 0.13	g : 0.08	b : 0.08	f : 0.08	" : 0.05	! : 0.05	d : 0.03	[ : 0.03	= : 0.03	a : 0.01	i : 0.01	# : 0.01	h : 0.01	
e : 0.27	[ : 0.16	! : 0.08	f : 0.08	g : 0.06	d : 0.06	c : 0.06	" : 0.06	b : 0.05	= : 0.03	i : 0.01	# : 0.01	
c : 0.27	e : 0.23	! : 0.10	f : 0.08	d : 0.06	[ : 0.06	g : 0.05	" : 0.03	= : 0.03	a : 0.01	i : 0.01	b : 0.01	
c : 0.23	e : 0.22	b : 0.18	d : 0.06	f : 0.06	[ : 0.06	g : 0.05	! : 0.03	= : 0.03	" : 0.01	i : 0.01	
c : 0.23	e : 0.20	b : 0.18	a : 0.13	d : 0.06	f : 0.06	g : 0.05	= : 0.03	i : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.23	e : 0.20	b : 0.18	a : 0.13	d : 0.06	f : 0.06	g : 0.05	= : 0.03	i : 0.01	
c : 0.25	e : 0.20	b : 0.18	] : 0.06	d : 0.06	f : 0.06	g : 0.05	2 : 0.03	= : 0.03	3 : 0.01	i : 0.01	
c : 0.27	e : 0.23	2 : 0.11	] : 0.08	d : 0.06	f : 0.06	g : 0.05	= : 0.03	a : 0.01	3 : 0.01	i : 0.01	b : 0.01	
e : 0.30	] : 0.16	2 : 0.10	f : 0.08	g : 0.06	d : 0.06	c : 0.06	b : 0.05	= : 0.03	3 : 0.01	i : 0.01	6 : 0.01	
e : 0.37	c : 0.11	b : 0.10	f : 0.08	g : 0.06	d : 0.05	] : 0.03	= : 0.03	h : 0.03	2 : 0.03	a : 0.01	3 : 0.01	i : 0.01	6 : 0.01	
e : 0.22	] : 0.15	c : 0.10	f : 0.10	g : 0.08	b : 0.08	d : 0.05	3 : 0.03	= : 0.03	: : 0.03	h : 0.03	2 : 0.03	i : 0.01	6 : 0.01	

#score	694.4971290931348
#seq	59
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_transcript_m1_run2.txt

#BEAR
!!bb[bbffffff!!aooooooa22ffffff]bb]bb444	chr17:4575292-4575605(-)$1	313	222	262	13.0805
eeffffff[ffffffooooooffffff]ffffff]eeeee	chr7:131099299-131099611(+)$1	312	71	111	13.7045
ccc"""ggggggg[aooooooa]ggggggg333ccc]fff	chr8:124408485-124408771(-)$1	286	56	96	16.7795
ee[ccc[a[eeeee[aooooooaeeeee]a22ccc]eeee	chr7:156979440-156979834(+)$1	394	352	392	14.4201
g[a!!ccc[ccccccooooooccc]ccc]cccaggggggg	chr17:80018479-80018759(-)$1	280	193	233	18.4367
ccc"""ddddddddoooooodddd]dddd22ccc333ddd	chr3:195710914-195711193(-)$1	279	71	111	13.0049
cc[ahhhhhhhhcccooooooccc]hhhhhhhh]a]cccg	chr1:204485456-204485760(+)$1	304	17	57	14.1716
eiiiiiiiii"""bboooooobb4444iiiiiiiii]eee	chr9:139621370-139621641(-)$1	271	153	193	15.9118
gccc####ccc[cccoooooocccccc4444ccc333ggg	chr12:57884219-57884482(+)$1	263	195	235	17.3344
ffff"""a[eeeeeaooooooa]eeeee]a333ffffff4	chr7:156755634-156755957(+)$1	323	261	301	14.5230
[cccdddd[bb!!ccclllccc4444bb]dddd333cccf	chr7:2258871-2259131(-)$1	260	47	87	11.8002
ffffffdddd!!cccooooooccc4444dddd]ffffff]	chr19:50168027-50168279(-)$1	252	142	182	14.3107
ddd[dddd[ccc[cccnnnnnccc]ccc]dddd]dddd]d	chr19:34882638-34882878(+)$1	240	58	98	12.5192
c"""dddd"""ccc!!annnnna22ccc22ddddccc]gg	chr11:373120-373379(+)$1	259	85	125	11.9408
ccc[ccc!!ffffffmmmmffffffccc]ccciiiiiiii	chr2:101924482-101924780(-)$1	298	241	281	11.5852
fff!!ccc"""ccc[bbnnnnnbb]ccc333ccc22ffff	chr4:130023653-130024062(+)$1	409	292	332	11.9437
dggggggg[a"""bboooooobba]ggggggg22ddddDD	chr4:1741331-1741620(+)$1	289	67	107	13.2556
a[a[ffffff"""cccnnnnnccc4444ffffff]a]a==	chr17:61875296-61875559(+)$1	263	70	110	12.6163
eeee[ccc[a[bbcccmmmmccc]bb]a]ccc]eeeeeee	chr13:100199135-100199430(+)$1	295	105	145	11.4600
b[a[ddddeeeeecccooooooccc4444eeeee22dddd	chr22:36684287-36684540(-)$1	253	63	103	13.5979
:dddd[ffffffcccooooooccc]ffffffddddcccdd	chr11:6532406-6532706(+)$1	300	148	188	13.7986
""ccc[ddddccc!!aooooooa22ccc]dddd]ccceee	chr2:61405235-61405498(+)$1	263	24	64	15.0297
"ccc####gggggggoooooogggggggccc]ccc]ccc:	chr5:176729476-176729712(-)$1	236	76	116	15.5926
eeeecccadddd[bboooooobbdddd]a]ccc22eeeee	chr16:2284781-2285039(+)$1	258	150	190	13.3754
[eeeee[agggggggooooooggggggg]a]eeeee]aff	chr17:77077931-77078230(+)$1	299	214	254	15.4312
c[bb!!==========mmmm==========22bb]cccFF	chr2:187373185-187373479(+)$1	294	199	239	11.8839
cc"""ccc!!a!!bboooooobb22a22cccccc]dddd:	chrX:40944906-40945226(+)$1	320	64	104	14.9237
eee!!ccc[ffffffrrrrrrrrrffffff333ccc]eee	chr5:462263-462547(+)$1	284	14	54	12.1255
hhhh[bb!!ccccccooooooccc]ccc]bb]hhhhhhhh	chr12:107380673-107380993(-)$1	320	113	153	14.8118
"""eeeee[bb[cccooooooccc]bbeeeee333dddd:	chr3:156869414-156869691(-)$1	277	65	105	14.7725
""ccc####ffffffooooooffffff22ccc333hhhhh	chr22:40754764-40755085(+)$1	321	215	255	14.9407
!!eeeeedddd[cccooooooccc]dddd4444eeeee22	chr3:155611202-155611576(+)$1	374	196	236	14.8266
hhhhhhh"""eeeeeooooooeeeee333hhhhhhhh444	chr6:99860334-99860602(-)$1	268	211	251	12.8493
EEEE===========oooooo===========eeeee[ee	chr1:28906070-28906327(-)$1	257	46	86	12.6142
[iiiiiiiii!!cccooooooccciiiiiiiii55555ii	chr16:67202842-67203121(+)$1	279	187	227	13.6052
b[===========[ddddllldddd22===========]b	chr5:94886175-94886457(-)$1	282	79	119	11.7170
bbggggggg"""cccooooooccc]ggggggg:bbooooo	chr1:89990348-89990663(+)$1	315	153	193	13.9896
======####ddddrrrrrrrrrdddd333==========	chr7:12373004-12373273(-)$1	269	155	195	11.9643
ccc[bb[a[ffffffooooooffffff]a333bb22ccc:	chr11:290463-290677(+)$1	214	92	132	14.3695
c[a[a!!bb"""cccooooooccc333bb22aa]ccc555	chr17:46128817-46129089(+)$1	272	69	109	14.0544
####ccc[gggggggooooooggggggg]ccc333bb]cc	chr6:56954857-56955202(+)$1	345	243	283	16.6874
eee[cccccc[aa[cccmmmmccc]a]a]ccc]ccc]eee	chr19:1978542-1978836(+)$1	294	4	44	13.0821
[bb[dddd[bb[cccooooooccc]bb]ddddbb]eeeee	chr1:26560606-26560859(+)$1	253	7	47	14.8129
ddd!!bbffffff!!aooooooa22ffffff]bb22dddd	chr1:211449500-211449804(+)$1	304	101	141	13.3443
e"""ggggggg[cccooooooccc]ggggggg22eeeee]	chr6:31729148-31729403(+)$1	255	114	154	17.3145
dddd[ffffff[cccooooooccc]ffffffdddd22bb]	chr17:617759-618121(-)$1	362	214	254	14.5015
b[a!!ggggggg!!ccclllccc22ggggggg4444a]bb	chr11:93466392-93466666(-)$1	274	65	105	13.4059
eeeggggggg!!cccoooooocccggggggg:hhhhhhhh	chr6:31725862-31726103(+)$1	241	134	174	14.5706
eeeee[a[gggggggooooooggggggg333a]eeeeeff	chr8:124382102-124382371(-)$1	269	36	76	15.9122
ccc[ccc[ccc[a[cccmmmmcccaccc22ccc]ccc]ee	chr21:46895292-46895555(+)$1	263	96	136	12.8376
b[gggggggcccddddoooooodddd22ccc]ggggggg]	chr16:1814014-1814297(+)$1	283	8	48	13.7539
cccc[ccc!!eeeeellleeeee22ccc]ccc]ccc4444	chr6:43737931-43738175(+)$1	244	23	63	11.7509
[ddddccc[ccc[ddddllldddd]ccc]ccc]dddd]bb	chr1:235491310-235491583(-)$1	273	69	109	11.6046
%%%%%==========oooooo==========eeeee22a:	chr18:690446-690727(-)$1	281	210	250	12.5725
c[eeeee!!gggggggooooooggggggg22eeeeeccc:	chr3:25790802-25791062(-)$1	260	194	234	13.9173
b[eeeee"""ccc[aooooooaccc]eeeeebbdddd]bb	chr22:23627156-23627480(+)$1	324	124	164	13.9764
[ccc[ccc"""ddddnnnnndddd]ccc]ccc]bb22bb]	chr22:50879211-50879529(+)$1	318	140	180	11.8506

#otherMatches

#Seq PSSM
CAGGAGGGGAGGUAGAAGAAGGUGCACCUCCACCCCCAAC	chr17:4575292-4575605(-)$1	313	222	262	13.0805
UUCCUUUAAAAGAAACUAUUAUUUCUUCUAAAGGUGAUGG	chr7:131099299-131099611(+)$1	312	71	111	13.7045
CGGCCGCUGGCGCGGAGCUUGUGGCGCCAGAAUUCGGAGC	chr8:124408485-124408771(-)$1	286	56	96	16.7795
UAAGUUUUGUCUGCUCUUUUCUGGUAGAGAUUGAUGUAGG	chr7:156979440-156979834(+)$1	394	352	392	14.4201
AGCCAGCCCUGGGCGGGGAUGUGCACCAAGGUGUGGGCUC	chr17:80018479-80018759(-)$1	280	193	233	18.4367
GCAGAACUGAAGAUGGGAAGAUUUAUCAGCGUGCAUUUGG	chr3:195710914-195711193(-)$1	279	71	111	13.0049
CGGAGGCCUCACCGGAAGCCCUCGUGUGAGGCCGUGUGGG	chr1:204485456-204485760(+)$1	304	17	57	14.1716
UGCAUUGGAGCUGGAACAGGGUCAAUCCUCCAAUGUAACU	chr9:139621370-139621641(-)$1	271	153	193	15.9118
AGCAGAAUCCAGUGUGAGUAGACAUGGCACAUGUGAGUGG	chr12:57884219-57884482(+)$1	263	195	235	17.3344
CAGGCAGAGGCACCCCCCUGUGUGGUGUGUGGUCCUGGCU	chr7:156755634-156755957(+)$1	323	261	301	14.5230
ACGCACUGAAGGGGAGGAUCUCGGAACUGCAGUGGAGCGU	chr7:2258871-2259131(-)$1	260	47	87	11.8002
CCGGUCGCGCCCAGGAAAUGCCCUAUACGCGCAGGCCGGA	chr19:50168027-50168279(-)$1	252	142	182	14.3107
GAGGUGGGAUCUGGUAUUAAUUAUGAGAAUCUGGUUCUGU	chr19:34882638-34882878(+)$1	240	58	98	12.5192
CUGUGGCCUCAGACGACAACUCGGAGUUCUGGCUGAGUCU	chr11:373120-373379(+)$1	259	85	125	11.9408
CUGGGGUCUUCAGGGUUGGCCCUGAACCGCAGGCCGCGAA	chr2:101924482-101924780(-)$1	298	241	281	11.5852
GGUAAGUGGAAGUACUGUAUUUUAUUGCAAACAUAAAUCU	chr4:130023653-130024062(+)$1	409	292	332	11.9437
UGCCUGCUGACUUGGGUGUGGCCUGAGCAGGUAAAGGCGA	chr4:1741331-1741620(+)$1	289	67	107	13.2556
UGUCAUUCUAUACAGCCUUUUGUUUCAUUAGGAUCAGGCA	chr17:61875296-61875559(+)$1	263	70	110	12.6163
UUCGCUUGCCUGGGAUUUUUGUCACCUGCCAACCGAGGAG	chr13:100199135-100199430(+)$1	295	105	145	11.4600
UGAUGUUCCUUCCCCCAGGUGCGGGAGAUGGAGGCAGAGC	chr22:36684287-36684540(-)$1	253	63	103	13.5979
UGCUAUGAGCUGCUGGACCUGCAGACGGCUCUAGCCGAGG	chr11:6532406-6532706(+)$1	300	148	188	13.7986
CGGCAGCCCUCCGCCGCAGAACCUCCGGAAGGGAUGUCCU	chr2:61405235-61405498(+)$1	263	24	64	15.0297
ACAGCAGCAGCUUUGAGCGAGCAAAGUUCUGGGUGAAGGA	chr5:176729476-176729712(-)$1	236	76	116	15.5926
CGGAAGACCCGCACACAGUGUUGGUGGAGUUCUCGUCCGU	chr16:2284781-2285039(+)$1	258	150	190	13.3754
GUGGGUGGUGGCUUUCGUCCAAGGGCCAGCGGCCCAGUGC	chr17:77077931-77078230(+)$1	299	214	254	15.4312
UGAUGAAAAUCUUUUCACUGGAGAGGAUUUGGAUGAACUA	chr2:187373185-187373479(+)$1	294	199	239	11.8839
ACAGAGGCGGCGACUAGGGGAAGGUGAAGCCGUCGCUGCA	chrX:40944906-40945226(+)$1	320	64	104	14.9237
CAUAGUCAGUUUAAAAAGAAAGUAUUUAAAGAAUGAAGUG	chr5:462263-462547(+)$1	284	14	54	12.1255
UGAGACCGAGGACCGAAAUCCCGGCUCCAGGCCUCGGGGA	chr12:107380673-107380993(-)$1	320	113	153	14.8118
AUCCAGUGCAAGCUCUCAUCCGAGAUUCACUGAAGUGGUC	chr3:156869414-156869691(-)$1	277	65	105	14.7725
AAGGGUACCACUGGCACUCAGGCCAGUUUCCUGCAGCUCU	chr22:40754764-40755085(+)$1	321	215	255	14.9407
CAUAGACCGAAGAGUGAGGGAACUGUUCGUGCAGUCUGAA	chr3:155611202-155611576(+)$1	374	196	236	14.8266
UAAAAAACAGAAUGAAGauuauuauuaaauuuuuuaauuu	chr6:99860334-99860602(-)$1	268	211	251	12.8493
ACAGGUUUCAGAGAUGGUUGGAUCUCUGAAAUUGUAAAAU	chr1:28906070-28906327(-)$1	257	46	86	12.6142
AGGCCAGGGGUGGCUGAGUCAAGCCCUCUGGUCCAUAGCU	chr16:67202842-67203121(+)$1	279	187	227	13.6052
CAUACUUGUUUUUGUUUAAUUUAGAUGGAAAAUGGGUAAG	chr5:94886175-94886457(-)$1	282	79	119	11.7170
CGGGGCCGCAGCCUGCCCGCCCGGAGCGGCCCAGGAGCAC	chr1:89990348-89990663(+)$1	315	153	193	13.9896
UGGAGUCAAAUGUGAGAAGAAAAUACAGGUAUUUCAGAGU	chr7:12373004-12373273(-)$1	269	155	195	11.9643
CCCAGACCUGGACCUGCAUCAGGGUCCUGACUUCCAGGGA	chr11:290463-290677(+)$1	214	92	132	14.3695
CAGACAACGGGGUGCGAGAAAGCGAAACGGAGCAGGGAUU	chr17:46128817-46129089(+)$1	272	69	109	14.0544
UCUCAGAGGCGAACCGCGAAGGGUUUGUGUUUUCUGCGGU	chr6:56954857-56955202(+)$1	345	243	283	16.6874
AGGGGCAGGGAGGGGGCUGCCGCCGCACGCCCGUGCGUCU	chr19:1978542-1978836(+)$1	294	4	44	13.0821
GACUCCCGAUUGGCCAGAGGCGGCAGAACGGGGUGGGGCC	chr1:26560606-26560859(+)$1	253	7	47	14.8129
CUUGGCAUGUUGUUCUGGCAUAAACAUAACAUUGAGAAGU	chr1:211449500-211449804(+)$1	304	101	141	13.3443
GCUUCUGGCCGCUGUGCUCCGACACUGGCUGGCACGUGGA	chr6:31729148-31729403(+)$1	255	114	154	17.3145
GCCGUGCUGCAGCUCACGCCCGAGGUGCAGCUGGCCAUCG	chr17:617759-618121(-)$1	362	214	254	14.5015
CGUUAUGAAAAACCAGAUAAUCUACUUUUUUACCUUAGGU	chr11:93466392-93466666(-)$1	274	65	105	13.4059
UCCAGCUCUUUCGGGACAUUGCCCAAGAGUUCUCUGAUGA	chr6:31725862-31726103(+)$1	241	134	174	14.5706
ACUCACCUAUGUUAAAAAUUGUUAACAUUUUGCUGAGUAU	chr8:124382102-124382371(-)$1	269	36	76	15.9122
GGCAUCCGGAGACUCUGGCAGCGGGCUCGGGGACGCCCGG	chr21:46895292-46895555(+)$1	263	96	136	12.8376
CGCCAGAAGCUGGCAGCCCUACCUGUCUCAGAUUUCUGGA	chr16:1814014-1814297(+)$1	283	8	48	13.7539
CUUGGGGCAGCCGGGUAGCUCGGAGGUCGUGGCGCUGGGG	chr6:43737931-43738175(+)$1	244	23	63	11.7509
GUCGGUGGGGGGGAAGCGAUGUUUGCCCGUCAGUCGAGUC	chr1:235491310-235491583(-)$1	273	69	109	11.6046
UGAAUGGggagaaaccaaccuguuuuuccuucuguccuca	chr18:690446-690727(-)$1	281	210	250	12.5725
auauccauuuauucauuuauucauggauacuuggguuguu	chr3:25790802-25791062(-)$1	260	194	234	13.9173
GUGGAUGAACUGGAGGCAGUGCCCAACAUCCCCCUGGUGC	chr22:23627156-23627480(+)$1	324	124	164	13.9764
GGCGACCAGAAGGCAGCGAGUGCCAUGGAUGCGGUGAGCA	chr22:50879211-50879529(+)$1	318	140	180	11.8506

#DB
..((.((((((((..(......)..)))))).)).))...	chr17:4575292-4575605(-)$1	1	222	262	13.0805
((((((((.((((((......)))))).)))))).)))))	chr7:131099299-131099611(+)$1	1	71	111	13.7045
(((...(((((((.(......).)))))))...))).)))	chr8:124408485-124408771(-)$1	1	56	96	16.7795
((.(((.(.(((((.(......)))))).)..))).))))	chr7:156979440-156979834(+)$1	1	352	392	14.4201
(.(..(((.((((((......))).))).)))))))))))	chr17:80018479-80018759(-)$1	1	193	233	18.4367
(((...((((((((......)))).))))..)))...)))	chr3:195710914-195711193(-)$1	1	71	111	13.0049
((.((((((((((((......))).)))))))).).)))(	chr1:204485456-204485760(+)$1	1	17	57	14.1716
((((((((((...((......))....))))))))).)))	chr9:139621370-139621641(-)$1	1	153	193	15.9118
((((....(((.(((......))))))....)))...)))	chr12:57884219-57884482(+)$1	1	195	235	17.3344
((((...(.((((((......).))))).)...)))))).	chr7:156755634-156755957(+)$1	1	261	301	14.5230
.(((((((.((..(((...)))....)).))))...))))	chr7:2258871-2259131(-)$1	1	47	87	11.8002
((((((((((..(((......)))....)))).)))))).	chr19:50168027-50168279(-)$1	1	142	182	14.3107
(((.((((.(((.(((.....))).))).)))).)))).)	chr19:34882638-34882878(+)$1	1	58	98	12.5192
(...((((...(((..(.....)..)))..))))))).))	chr11:373120-373379(+)$1	1	85	125	11.9408
(((.(((..((((((....))))))))).)))))))))))	chr2:101924482-101924780(-)$1	1	241	281	11.5852
(((..(((...(((.((.....)).)))...)))..))))	chr4:130023653-130024062(+)$1	1	292	332	11.9437
((((((((.(...((......))).)))))))..))))((	chr4:1741331-1741620(+)$1	1	67	107	13.2556
(.(.((((((...(((.....)))....)))))).).)))	chr17:61875296-61875559(+)$1	1	70	110	12.6163
((((.(((.(.(((((....))).)).).))).)))))((	chr13:100199135-100199430(+)$1	1	105	145	11.4600
(.(.((((((((((((......)))....)))))..))))	chr22:36684287-36684540(-)$1	1	63	103	13.5979
.((((.(((((((((......))).))))))))))(((((	chr11:6532406-6532706(+)$1	1	148	188	13.7986
..(((.(((((((..(......)..))).)))).))))))	chr2:61405235-61405498(+)$1	1	24	64	15.0297
.(((....(((((((......)))))))))).))).))).	chr5:176729476-176729712(-)$1	1	76	116	15.5926
((((((((((((.((......)))))).).)))..)))))	chr16:2284781-2285039(+)$1	1	150	190	13.3754
.(((((.((((((((......))))))).).))))).)))	chr17:77077931-77078230(+)$1	1	214	254	15.4312
(.((..((((((((((....))))))))))..)).)))))	chr2:187373185-187373479(+)$1	1	199	239	11.8839
((...(((..(..((......))..)..)))))).)))).	chrX:40944906-40945226(+)$1	1	64	104	14.9237
(((..(((.((((((.........))))))...))).)))	chr5:462263-462547(+)$1	1	14	54	12.1255
((((.((..((((((......))).))).)).))))))))	chr12:107380673-107380993(-)$1	1	113	153	14.8118
...(((((.((.(((......))).)))))))...)))).	chr3:156869414-156869691(-)$1	1	65	105	14.7725
..(((....((((((......))))))..)))...)))))	chr22:40754764-40755085(+)$1	1	215	255	14.9407
..(((((((((.(((......))).))))....)))))..	chr3:155611202-155611576(+)$1	1	196	236	14.8266
(((((((...(((((......)))))...))))))))...	chr6:99860334-99860602(-)$1	1	211	251	12.8493
(((((((((((((((......)))))))))))(((((.((	chr1:28906070-28906327(-)$1	1	46	86	12.6142
.(((((((((..(((......)))))))))))).....))	chr16:67202842-67203121(+)$1	1	187	227	13.6052
(.(((((((((((.((((...))))..))))))))))).)	chr5:94886175-94886457(-)$1	1	79	119	11.7170
))(((((((...(((......))).))))))).((.....	chr1:89990348-89990663(+)$1	1	153	193	13.9896
((((((....((((.........))))...))))))))))	chr7:12373004-12373273(-)$1	1	155	195	11.9643
(((.((.(.((((((......)))))).)...))..))).	chr11:290463-290677(+)$1	1	92	132	14.3695
(.(.(..((...(((......)))...))..)).)))...	chr17:46128817-46129089(+)$1	1	69	109	14.0544
....(((.(((((((......))))))).)))...)).))	chr6:56954857-56955202(+)$1	1	243	283	16.6874
(((.((((((.((.(((....))).).).))).))).)))	chr19:1978542-1978836(+)$1	1	4	44	13.0821
.((.((((.((.(((......))).)).)))))).)))))	chr1:26560606-26560859(+)$1	1	7	47	14.8129
(((..((((((((..(......)..)))))).))..))))	chr1:211449500-211449804(+)$1	1	101	141	13.3443
(...(((((((.(((......))).)))))))..))))).	chr6:31729148-31729403(+)$1	1	114	154	17.3145
((((.((((((.(((......))).))))))))))..)).	chr17:617759-618121(-)$1	1	214	254	14.5015
(.(..(((((((..(((...)))..)))))))....).))	chr11:93466392-93466666(-)$1	1	65	105	13.4059
)))(((((((..(((......)))))))))).((((((((	chr6:31725862-31726103(+)$1	1	134	174	14.5706
(((((.(.(((((((......)))))))...).)))))((	chr8:124382102-124382371(-)$1	1	36	76	15.9122
(((.(((.(((.(.(((....)))))))..))).))).))	chr21:46895292-46895555(+)$1	1	96	136	12.8376
(.((((((((((((((......))))..))).))))))).	chr16:1814014-1814297(+)$1	1	8	48	13.7539
((((.(((..(((((...)))))..))).))).)))....	chr6:43737931-43738175(+)$1	1	23	63	11.7509
.(((((((.(((.((((...)))).))).))).)))).))	chr1:235491310-235491583(-)$1	1	69	109	11.6046
.....((((((((((......)))))))))))))))..).	chr18:690446-690727(-)$1	1	210	250	12.5725
(.(((((..(((((((......)))))))..)))))))).	chr3:25790802-25791062(-)$1	1	194	234	13.9173
(.(((((...(((.(......)))).))))))))))).))	chr22:23627156-23627480(+)$1	1	124	164	13.9764
.(((.(((...((((.....)))).))).))).))..)).	chr22:50879211-50879529(+)$1	1	140	180	11.8506

#PSSM
c : 0.21	e : 0.17	[ : 0.10	b : 0.10	d : 0.07	" : 0.07	f : 0.05	! : 0.03	g : 0.03	h : 0.03	a : 0.01	: : 0.01	E : 0.01	= : 0.01	# : 0.01	% : 0.01	
c : 0.21	[ : 0.17	e : 0.15	d : 0.08	" : 0.08	f : 0.05	! : 0.03	i : 0.03	h : 0.03	b : 0.03	g : 0.01	E : 0.01	= : 0.01	# : 0.01	% : 0.01	
c : 0.21	e : 0.17	a : 0.08	d : 0.08	f : 0.07	" : 0.07	b : 0.05	g : 0.05	[ : 0.03	i : 0.03	h : 0.03	= : 0.03	E : 0.01	# : 0.01	% : 0.01	
[ : 0.15	c : 0.14	e : 0.14	" : 0.08	! : 0.08	g : 0.07	f : 0.05	d : 0.05	b : 0.03	i : 0.03	h : 0.03	= : 0.03	a : 0.01	E : 0.01	# : 0.01	% : 0.01	
c : 0.14	d : 0.12	[ : 0.10	! : 0.10	e : 0.10	g : 0.08	" : 0.07	f : 0.05	= : 0.05	h : 0.03	i : 0.03	# : 0.03	b : 0.01	a : 0.01	% : 0.01	
c : 0.24	g : 0.10	d : 0.08	e : 0.08	b : 0.07	f : 0.07	= : 0.07	" : 0.05	# : 0.05	[ : 0.05	h : 0.03	i : 0.03	! : 0.03	
c : 0.22	d : 0.14	g : 0.12	f : 0.07	# : 0.07	= : 0.07	e : 0.07	b : 0.05	[ : 0.05	h : 0.03	i : 0.03	" : 0.01	! : 0.01	a : 0.01	
c : 0.15	d : 0.15	g : 0.12	f : 0.10	a : 0.08	# : 0.07	= : 0.07	! : 0.05	[ : 0.05	i : 0.03	" : 0.03	h : 0.01	e : 0.01	b : 0.01	
[ : 0.22	g : 0.17	f : 0.08	d : 0.08	" : 0.08	! : 0.08	= : 0.07	c : 0.05	i : 0.03	# : 0.03	h : 0.01	e : 0.01	b : 0.01	
f : 0.17	g : 0.15	c : 0.14	" : 0.12	d : 0.08	= : 0.07	e : 0.05	b : 0.05	i : 0.03	a : 0.03	! : 0.03	h : 0.01	# : 0.01	
f : 0.15	c : 0.15	g : 0.14	" : 0.14	e : 0.08	d : 0.07	= : 0.07	b : 0.05	! : 0.05	[ : 0.03	h : 0.01	a : 0.01	
c : 0.15	f : 0.14	g : 0.12	[ : 0.12	e : 0.08	" : 0.08	! : 0.08	d : 0.07	= : 0.07	h : 0.01	b : 0.01	a : 0.01	
c : 0.33	f : 0.12	g : 0.10	e : 0.08	d : 0.07	= : 0.07	" : 0.05	! : 0.05	[ : 0.05	a : 0.03	b : 0.01	
c : 0.38	f : 0.08	[ : 0.08	d : 0.08	g : 0.08	! : 0.07	e : 0.07	b : 0.07	= : 0.05	
c : 0.40	f : 0.08	g : 0.08	! : 0.07	b : 0.07	d : 0.07	a : 0.05	= : 0.05	[ : 0.03	e : 0.03	o : 0.01	r : 0.01	
o : 0.57	c : 0.14	a : 0.07	d : 0.05	r : 0.03	! : 0.01	m : 0.01	b : 0.01	= : 0.01	l : 0.01	g : 0.01	n : 0.01	
o : 0.70	n : 0.05	m : 0.05	c : 0.05	l : 0.03	r : 0.03	d : 0.03	a : 0.01	b : 0.01	
o : 0.70	n : 0.08	m : 0.08	l : 0.07	r : 0.03	d : 0.01	
o : 0.70	n : 0.08	m : 0.08	l : 0.07	r : 0.03	e : 0.01	
o : 0.70	n : 0.08	m : 0.07	l : 0.05	r : 0.03	c : 0.01	f : 0.01	e : 0.01	
o : 0.68	n : 0.07	d : 0.05	c : 0.05	r : 0.03	m : 0.03	f : 0.01	= : 0.01	l : 0.01	e : 0.01	
c : 0.38	o : 0.12	f : 0.07	d : 0.07	b : 0.07	g : 0.07	a : 0.05	= : 0.05	n : 0.03	r : 0.03	e : 0.03	
c : 0.40	a : 0.08	d : 0.08	b : 0.08	g : 0.08	f : 0.07	= : 0.05	] : 0.03	r : 0.03	e : 0.03	4 : 0.01	
c : 0.36	2 : 0.12	d : 0.12	g : 0.10	f : 0.07	e : 0.05	= : 0.05	4 : 0.03	b : 0.01	a : 0.01	] : 0.01	r : 0.01	
] : 0.29	2 : 0.12	g : 0.12	f : 0.08	4 : 0.07	d : 0.07	e : 0.05	c : 0.05	= : 0.05	b : 0.01	i : 0.01	3 : 0.01	a : 0.01	
c : 0.21	g : 0.19	f : 0.14	d : 0.08	4 : 0.08	e : 0.05	b : 0.05	= : 0.05	a : 0.03	h : 0.01	i : 0.01	2 : 0.01	3 : 0.01	] : 0.01	
c : 0.21	g : 0.19	f : 0.14	d : 0.07	4 : 0.07	e : 0.05	b : 0.05	= : 0.05	2 : 0.05	] : 0.03	3 : 0.03	h : 0.01	i : 0.01	
g : 0.19	c : 0.19	f : 0.08	] : 0.07	e : 0.07	4 : 0.07	= : 0.07	2 : 0.05	d : 0.03	i : 0.03	b : 0.03	a : 0.03	3 : 0.03	h : 0.01	
] : 0.26	f : 0.12	g : 0.12	d : 0.07	3 : 0.07	= : 0.07	2 : 0.05	c : 0.05	i : 0.03	4 : 0.03	a : 0.03	e : 0.03	h : 0.01	b : 0.01	
c : 0.21	f : 0.12	g : 0.10	2 : 0.08	d : 0.08	3 : 0.07	= : 0.07	a : 0.05	e : 0.05	h : 0.03	i : 0.03	4 : 0.03	] : 0.01	b : 0.01	
c : 0.24	f : 0.10	3 : 0.10	d : 0.10	2 : 0.08	g : 0.08	= : 0.07	e : 0.05	h : 0.03	i : 0.03	4 : 0.03	] : 0.01	b : 0.01	
c : 0.26	d : 0.14	] : 0.08	e : 0.08	3 : 0.07	g : 0.07	= : 0.05	f : 0.03	2 : 0.03	h : 0.03	i : 0.03	a : 0.03	4 : 0.01	: : 0.01	b : 0.01	
c : 0.14	] : 0.12	b : 0.10	3 : 0.10	d : 0.10	e : 0.08	h : 0.07	i : 0.05	f : 0.03	a : 0.03	2 : 0.03	4 : 0.03	= : 0.03	: : 0.01	g : 0.01	
c : 0.17	e : 0.14	b : 0.12	] : 0.08	d : 0.08	f : 0.07	3 : 0.07	2 : 0.05	h : 0.05	g : 0.03	i : 0.03	= : 0.03	5 : 0.01	4 : 0.01	
c : 0.17	e : 0.14	] : 0.10	3 : 0.10	d : 0.10	2 : 0.08	h : 0.05	g : 0.03	i : 0.03	f : 0.03	= : 0.03	b : 0.03	a : 0.01	5 : 0.01	4 : 0.01	
e : 0.19	c : 0.17	d : 0.10	2 : 0.10	h : 0.07	] : 0.05	3 : 0.05	b : 0.03	g : 0.03	i : 0.03	f : 0.03	= : 0.03	a : 0.01	5 : 0.01	o : 0.01	4 : 0.01	
c : 0.19	e : 0.15	d : 0.14	] : 0.10	h : 0.07	f : 0.05	2 : 0.05	b : 0.03	g : 0.03	3 : 0.03	= : 0.03	i : 0.01	5 : 0.01	o : 0.01	a : 0.01	4 : 0.01	
e : 0.21	d : 0.12	c : 0.12	] : 0.10	f : 0.07	4 : 0.05	g : 0.05	h : 0.05	a : 0.03	5 : 0.03	= : 0.03	b : 0.03	i : 0.01	[ : 0.01	o : 0.01	2 : 0.01	
e : 0.21	f : 0.10	d : 0.10	c : 0.10	b : 0.08	g : 0.07	4 : 0.05	h : 0.05	] : 0.03	i : 0.03	= : 0.03	D : 0.01	F : 0.01	2 : 0.01	o : 0.01	5 : 0.01	a : 0.01	
e : 0.19	: : 0.10	f : 0.08	d : 0.08	] : 0.08	4 : 0.07	g : 0.07	b : 0.07	h : 0.05	i : 0.03	= : 0.03	D : 0.01	F : 0.01	2 : 0.01	o : 0.01	5 : 0.01	c : 0.01	

#score	788.9708012315783
#seq	57
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_UTR_m3_run1.txt

#BEAR
ee[bbqqqqqqqqbb]ee	chr14:56139295-56139520(+)$1	225	38	56	14.7600
Ga[bbqqqqqqqqbb]a:	chr6:56420080-56420350(-)$1	270	238	256	13.2515
eeeeeqqqqqqqqeeeee	chr6:7249507-7249750(+)$1	243	202	220	13.3954
ff[bbqqqqqqqqbb333	chr9:134371312-134371521(+)$1	209	171	189	14.9386
[acccqqqqqqqqccc]a	chr2:96950127-96950416(-)$1	289	87	105	14.3259
bb[bbqqqqqqqqbb]bb	chr2:61415242-61415488(-)$1	246	189	207	13.6676
""cccqqqqqqqqccc44	chr2:48025658-48025962(+)$1	304	147	165	14.4746
=====qqqqqqqq=====	chr6:64404419-64404755(+)$1	336	58	76	14.2527
b[cccqqqqqqqqccc22	chr2:86254126-86254384(-)$1	258	165	183	14.0641
ea[bbqqqqqqqqbb333	chr3:123366035-123366374(-)$1	339	37	55	15.1453
fffffqqqqqqqqfffff	chr14:31588816-31589098(-)$1	282	66	84	12.9170
eeeeeqqqqqqqqeeeee	chr12:7024843-7025087(+)$1	244	178	196	13.3954
$ddddqqqqqqqqdddd7	chr4:40121859-40122162(+)$1	303	182	200	12.4121
c[cccqqqqqqqqccc]c	chr9:116999160-116999395(+)$1	235	36	54	14.3311
eeeeeqqqqqqqqeeeee	chr1:39789811-39790046(+)$1	235	47	65	13.3954
ddcccqqqqqqqqccc]d	chr17:27001288-27001540(+)$1	252	167	185	13.9437
[ddddqqqqqqqqddddc	chr2:153529391-153529656(-)$1	265	217	235	13.0821
iiiiiqqqqqqqqiiiii	chr5:70806226-70806484(+)$1	258	7	25	13.8084
b!!bbqqqqqqqqbb22b	chr5:75989134-75989366(+)$1	232	49	67	14.3834
eeeeeqqqqqqqqeeeee	chr2:11355347-11355590(-)$1	243	65	83	13.3954
bb[bbqqqqqqqqbb]bb	chr12:56493572-56493892(+)$1	320	37	55	13.6676
==[bbqqqqqqqqbb]==	chr4:40123663-40123963(+)$1	300	17	35	14.9748
dd[bbqqqqqqqqbbddd	chr12:104325991-104326221(+)$1	230	3	21	14.0680
dd[bbqqqqqqqqbb]dd	chr8:61591508-61591740(+)$1	232	98	116	14.3674
###bbqqqqqqqqbb444	chr3:184049415-184049667(+)$1	252	38	56	14.8149
gggggqqqqqqqqggggg	chr1:27105645-27105906(+)$1	261	47	65	13.6887
eeeeeqqqqqqqqeeeee	chr16:58557189-58557416(-)$1	227	175	193	13.3954
!ddddqqqqqqqqdddd]	chr16:70588919-70589186(+)$1	267	127	145	13.2059
%ddddqqqqqqqqdddd]	chr9:134330431-134330652(+)$1	221	184	202	12.5450
eeeeeqqqqqqqqeeeee	chr19:55741463-55741726(-)$1	263	92	110	13.3954
eeeeeqqqqqqqqeeeee	chr1:24383477-24383794(-)$1	317	238	256	13.3954
fffffqqqqqqqqfffff	chr1:27105794-27106053(+)$1	259	40	58	12.9170
cccbbqqqqqqqqbb]cc	chr3:184040770-184040979(+)$1	209	74	92	14.3078
a[cccqqqqqqqqccc]a	chr17:16049626-16049880(-)$1	254	194	212	14.4013
cc!!aqqqqqqqqa22cc	chr17:4927473-4927744(+)$1	271	75	93	13.4624
fffffqqqqqqqqfffff	chr2:153533863-153534090(-)$1	227	24	42	12.9170
gggggqqqqqqqqggggg	chr9:96051080-96051351(+)$1	271	72	90	13.6887
eeeeeqqqqqqqqeeeee	chr1:39782913-39783152(+)$1	239	114	132	13.3954
a[cccqqqqqqqqccc]a	chr2:48025829-48026081(+)$1	252	78	96	14.4013
$$$bbqqqqqqqqbb22d	chr3:184039289-184039537(+)$1	248	131	149	13.9718
cddddqqqqqqqqdddd]	chr19:47503816-47504071(+)$1	255	151	169	13.0360
eecccqqqqqqqqccc22	chr9:114145463-114145703(-)$1	240	127	145	14.0894
dd[bbqqqqqqqqbb]dd	chr21:38574779-38575011(+)$1	232	118	136	14.3674
cddddqqqqqqqqdddd3	chr2:61729028-61729276(-)$1	248	44	62	13.1454
gggggqqqqqqqqggggg	chr12:104325247-104325478(+)$1	231	154	172	13.6887
gg[bbqqqqqqqqbbggg	chr6:32945856-32946187(+)$1	331	55	73	14.5531
ee!!aqqqqqqqqa22ee	chr22:42611209-42611443(-)$1	234	126	144	13.6993
=[cccqqqqqqqqccc]=	chr3:58139249-58139467(+)$1	218	123	141	14.5286
eeeeeqqqqqqqqeeeee	chr1:39788219-39788470(+)$1	251	2	20	13.3954
fffffqqqqqqqqfffff	chr5:154173563-154173844(+)$1	281	243	261	12.9170
b!!bbqqqqqqqqbb22b	chr2:74592540-74592832(-)$1	292	84	102	14.3834
fffffqqqqqqqqfffff	chr3:184043020-184043255(+)$1	235	137	155	12.9170
eeeeeqqqqqqqqeeeee	chr9:134350463-134350726(+)$1	263	19	37	13.3954
b[cccqqqqqqqqccc]b	chr6:56324828-56325122(-)$1	294	54	72	13.9945
e[cccqqqqqqqqccc]e	chr6:56347503-56347775(-)$1	272	197	215	14.4276
!!cccqqqqqqqqccc22	chr3:121410741-121411020(-)$1	279	243	261	14.3909
e!!bbqqqqqqqqbb]ee	chr5:179153579-179153795(+)$1	216	144	162	14.9112
"""bbqqqqqqqqbb333	chr1:39775212-39775468(+)$1	256	176	194	15.2311
##cccqqqqqqqqccc33	chrX:153583273-153583501(-)$1	228	134	152	14.6055
ggg[aqqqqqqqqa]ggg	chr2:232577052-232577260(+)$1	208	54	72	13.6485
!a[bbqqqqqqqqbb]a2	chr9:134454779-134455017(-)$1	238	140	158	14.7654
d[cccqqqqqqqqccc]d	chr17:42476193-42476464(-)$1	271	63	81	14.1937
eeeeeqqqqqqqqeeeee	chr9:123290000-123290284(-)$1	284	265	283	13.3954
dd[bbqqqqqqqqbb]dd	chr2:153530009-153530255(-)$1	246	37	55	14.3674
eeebbqqqqqqqqbb22e	chr5:65473241-65473570(+)$1	329	216	234	14.3850
####aqqqqqqqqa4444	chr6:56424992-56425203(-)$1	211	116	134	14.2041
[ddddqqqqqqqqddddg	chr6:56366217-56366492(-)$1	275	241	259	13.1124
iiiiiqqqqqqqqiiiii	chr11:129992097-129992351(+)$1	254	11	29	13.8084
b!!bbqqqqqqqqbb]bb	chrX:39923683-39923950(-)$1	267	203	221	14.1303
""cccqqqqqqqqccc22	chr8:124346041-124346318(-)$1	277	53	71	14.3014
$$$bbqqqqqqqqbb22d	chr3:184039363-184039613(+)$1	250	57	75	13.9718

#otherMatches

#Seq PSSM
GUUUCACAUUUCAGAUGC	chr14:56139295-56139520(+)$1	225	38	56	14.7600
GGUCAGAAAUAAAUGUCA	chr6:56420080-56420350(-)$1	270	238	256	13.2515
UAAGAUGAUAAUUUCUUA	chr6:7249507-7249750(+)$1	243	202	220	13.3954
GACGACUCCUUCAUCCCA	chr9:134371312-134371521(+)$1	209	171	189	14.9386
CGCCAGGUAUACAUGGAC	chr2:96950127-96950416(-)$1	289	87	105	14.3259
AUUGAAUCUACAAUCCAU	chr2:61415242-61415488(-)$1	246	189	207	13.6676
AGAGGAAGUACAGCCUAA	chr2:48025658-48025962(+)$1	304	147	165	14.4746
GUGAAGGCAGAAAUUCAU	chr6:64404419-64404755(+)$1	336	58	76	14.2527
CCUGAUUCACGAUUCACU	chr2:86254126-86254384(-)$1	258	165	183	14.0641
accccAAGUUAGCGGAAA	chr3:123366035-123366374(-)$1	339	37	55	15.1453
CAUGGGAUGAUGAUUAUG	chr14:31588816-31589098(-)$1	282	66	84	12.9170
GGGAGAUCCUGGACUCCC	chr12:7024843-7025087(+)$1	244	178	196	13.3954
AAAAGCAAAUCGACUUUG	chr4:40121859-40122162(+)$1	303	182	200	12.4121
GGCGGCUGUUCACCUGGC	chr9:116999160-116999395(+)$1	235	36	54	14.3311
UUCUAGAAAGUGGUAGAA	chr1:39789811-39790046(+)$1	235	47	65	13.3954
CGCAGUGAGUAGUCUGUC	chr17:27001288-27001540(+)$1	252	167	185	13.9437
GCACAUUUAAAGUUGUGU	chr2:153529391-153529656(-)$1	265	217	235	13.0821
AGAGGAGGUUAAGCCUCU	chr5:70806226-70806484(+)$1	258	7	25	13.8084
AAGAAGCUGAUAAUUGAU	chr5:75989134-75989366(+)$1	232	49	67	14.3834
AGAUCAACUUGAAGAUUU	chr2:11355347-11355590(-)$1	243	65	83	13.3954
CUAUCGAUAUAGAGAGAG	chr12:56493572-56493892(+)$1	320	37	55	13.6676
UUCCAAAGGAUUAUGUGA	chr4:40123663-40123963(+)$1	300	17	35	14.9748
CCUCUAGUUUUGAAGGGA	chr12:104325991-104326221(+)$1	230	3	21	14.0680
UCGGCACUAGGCAGCGGA	chr8:61591508-61591740(+)$1	232	98	116	14.3674
GCAAGAAUGAAGACUGAA	chr3:184049415-184049667(+)$1	252	38	56	14.8149
UCUAGGUCCUAAACUAGA	chr1:27105645-27105906(+)$1	261	47	65	13.6887
AAAGGAUCUCCUCCCUUU	chr16:58557189-58557416(-)$1	227	175	193	13.3954
AACCAGCGACAAGUGGUG	chr16:70588919-70589186(+)$1	267	127	145	13.2059
AGAGCAUUUCCCAGUUUC	chr9:134330431-134330652(+)$1	221	184	202	12.5450
AUAUAUUAUAUAUUAUAU	chr19:55741463-55741726(-)$1	263	92	110	13.3954
gcugcuaaacacugcagc	chr1:24383477-24383794(-)$1	317	238	256	13.3954
AUCGUACAGAAGAAUGAU	chr1:27105794-27106053(+)$1	259	40	58	12.9170
GAGACCUUUUCCUGUCCU	chr3:184040770-184040979(+)$1	209	74	92	14.3078
AGUAGUUUGAUGUUUAAU	chr17:16049626-16049880(-)$1	254	194	212	14.4013
GAGAUGAGAGAGAAGGUC	chr17:4927473-4927744(+)$1	271	75	93	13.4624
CUUUAUCUUCUUUUAAAG	chr2:153533863-153534090(-)$1	227	24	42	12.9170
CCCAGCAACCCUCCUGGG	chr9:96051080-96051351(+)$1	271	72	90	13.6887
GCUCCCAGCUGCAGGAGC	chr1:39782913-39783152(+)$1	239	114	132	13.3954
UGUGGAAUUUAAGCCAGA	chr2:48025829-48026081(+)$1	252	78	96	14.4013
CUUUGGCAUCUCACACAG	chr3:184039289-184039537(+)$1	248	131	149	13.9718
GGAGAACCGGUCCUCUCU	chr19:47503816-47504071(+)$1	255	151	169	13.0360
GCUGGCCAGAGAACCAUC	chr9:114145463-114145703(-)$1	240	127	145	14.0894
GUACUGUGACCUAAGAAC	chr21:38574779-38575011(+)$1	232	118	136	14.3674
UUAUAUUCUUAUUUAUAC	chr2:61729028-61729276(-)$1	248	44	62	13.1454
GUUUGUGUUCAUUUGAAC	chr12:104325247-104325478(+)$1	231	154	172	13.6887
GUACAUGAACAACUGGCU	chr6:32945856-32946187(+)$1	331	55	73	14.5531
AACAGUAUGCAGUCCUUU	chr22:42611209-42611443(-)$1	234	126	144	13.6993
GCAUUGCGGGCAGGAUUU	chr3:58139249-58139467(+)$1	218	123	141	14.5286
AUGAUGUAUGUGAAUUAU	chr1:39788219-39788470(+)$1	251	2	20	13.3954
ACAUCAAGCGCCAGAUGU	chr5:154173563-154173844(+)$1	281	243	261	12.9170
CUCCUGGAGAAGAAGUUG	chr2:74592540-74592832(-)$1	292	84	102	14.3834
AGGGGUGUGUGUCCCCCU	chr3:184043020-184043255(+)$1	235	137	155	12.9170
AGAGAACGAUGCCUCUCU	chr9:134350463-134350726(+)$1	263	19	37	13.3954
UGCUGGUUAAAUACAGGG	chr6:56324828-56325122(-)$1	294	54	72	13.9945
GGGUCAAGGUCCAGAUGC	chr6:56347503-56347775(-)$1	272	197	215	14.4276
AGACCGCAUAGUGGGUGA	chr3:121410741-121411020(-)$1	279	243	261	14.3909
CAGUCAAGAGGAGGAAGA	chr5:179153579-179153795(+)$1	216	144	162	14.9112
CCAGGCUUACAUUCCAUU	chr1:39775212-39775468(+)$1	256	176	194	15.2311
AGGCAAAGUGACGUGCAC	chrX:153583273-153583501(-)$1	228	134	152	14.6055
ACAGUAGGAGGGAAGUGU	chr2:232577052-232577260(+)$1	208	54	72	13.6485
ACGCCGGGAUCCAGGAGA	chr9:134454779-134455017(-)$1	238	140	158	14.7654
CUGAGGAGAGGCAUUCUG	chr17:42476193-42476464(-)$1	271	63	81	14.1937
CUGAAUUUUUAGCUUCAG	chr9:123290000-123290284(-)$1	284	265	283	13.3954
UUACUCCCAAAAAAGAAG	chr2:153530009-153530255(-)$1	246	37	55	14.3674
AGUUGGAGAAGAACAGUA	chr5:65473241-65473570(+)$1	329	216	234	14.3850
GUUGCGUUACUUAGAUGA	chr6:56424992-56425203(-)$1	211	116	134	14.2041
auuaaagauaaaauuaga	chr6:56366217-56366492(-)$1	275	241	259	13.1124
GUUUUUGUGUUUCAGAAU	chr11:129992097-129992351(+)$1	254	11	29	13.8084
CUCCCGCAGACCAGGUGG	chrX:39923683-39923950(-)$1	267	203	221	14.1303
UAAGGUUGUAGCUCCUCC	chr8:124346041-124346318(-)$1	277	53	71	14.3014
CUUUGGCAUCUCACACAG	chr3:184039363-184039613(+)$1	250	57	75	13.9718

#DB
((.((........)).))	chr14:56139295-56139520(+)$1	1	38	56	14.7600
)(.((........)).).	chr6:56420080-56420350(-)$1	1	238	256	13.2515
(((((........)))))	chr6:7249507-7249750(+)$1	1	202	220	13.3954
((.((........))...	chr9:134371312-134371521(+)$1	1	171	189	14.9386
.((((........))).)	chr2:96950127-96950416(-)$1	1	87	105	14.3259
((.((........)).))	chr2:61415242-61415488(-)$1	1	189	207	13.6676
..(((........)))..	chr2:48025658-48025962(+)$1	1	147	165	14.4746
(((((........)))))	chr6:64404419-64404755(+)$1	1	58	76	14.2527
(.(((........)))..	chr2:86254126-86254384(-)$1	1	165	183	14.0641
((.((........))...	chr3:123366035-123366374(-)$1	1	37	55	15.1453
(((((........)))))	chr14:31588816-31589098(-)$1	1	66	84	12.9170
(((((........)))))	chr12:7024843-7025087(+)$1	1	178	196	13.3954
.((((........)))).	chr4:40121859-40122162(+)$1	1	182	200	12.4121
(.(((........))).)	chr9:116999160-116999395(+)$1	1	36	54	14.3311
(((((........)))))	chr1:39789811-39790046(+)$1	1	47	65	13.3954
(((((........))).)	chr17:27001288-27001540(+)$1	1	167	185	13.9437
.((((........)))))	chr2:153529391-153529656(-)$1	1	217	235	13.0821
(((((........)))))	chr5:70806226-70806484(+)$1	1	7	25	13.8084
(..((........))..)	chr5:75989134-75989366(+)$1	1	49	67	14.3834
(((((........)))))	chr2:11355347-11355590(-)$1	1	65	83	13.3954
((.((........)).))	chr12:56493572-56493892(+)$1	1	37	55	13.6676
((.((........)).))	chr4:40123663-40123963(+)$1	1	17	35	14.9748
((.((........)))))	chr12:104325991-104326221(+)$1	1	3	21	14.0680
((.((........)).))	chr8:61591508-61591740(+)$1	1	98	116	14.3674
...((........))...	chr3:184049415-184049667(+)$1	1	38	56	14.8149
(((((........)))))	chr1:27105645-27105906(+)$1	1	47	65	13.6887
(((((........)))))	chr16:58557189-58557416(-)$1	1	175	193	13.3954
.((((........)))).	chr16:70588919-70589186(+)$1	1	127	145	13.2059
.((((........)))).	chr9:134330431-134330652(+)$1	1	184	202	12.5450
(((((........)))))	chr19:55741463-55741726(-)$1	1	92	110	13.3954
(((((........)))))	chr1:24383477-24383794(-)$1	1	238	256	13.3954
(((((........)))))	chr1:27105794-27106053(+)$1	1	40	58	12.9170
(((((........)).))	chr3:184040770-184040979(+)$1	1	74	92	14.3078
(.(((........))).)	chr17:16049626-16049880(-)$1	1	194	212	14.4013
((..(........)..))	chr17:4927473-4927744(+)$1	1	75	93	13.4624
(((((........)))))	chr2:153533863-153534090(-)$1	1	24	42	12.9170
(((((........)))))	chr9:96051080-96051351(+)$1	1	72	90	13.6887
(((((........)))))	chr1:39782913-39783152(+)$1	1	114	132	13.3954
(.(((........))).)	chr2:48025829-48026081(+)$1	1	78	96	14.4013
...((........))..)	chr3:184039289-184039537(+)$1	1	131	149	13.9718
(((((........)))).	chr19:47503816-47504071(+)$1	1	151	169	13.0360
(((((........)))..	chr9:114145463-114145703(-)$1	1	127	145	14.0894
((.((........)).))	chr21:38574779-38575011(+)$1	1	118	136	14.3674
(((((........)))).	chr2:61729028-61729276(-)$1	1	44	62	13.1454
(((((........)))))	chr12:104325247-104325478(+)$1	1	154	172	13.6887
((.((........)))))	chr6:32945856-32946187(+)$1	1	55	73	14.5531
((..(........)..))	chr22:42611209-42611443(-)$1	1	126	144	13.6993
(.(((........))).)	chr3:58139249-58139467(+)$1	1	123	141	14.5286
(((((........)))))	chr1:39788219-39788470(+)$1	1	2	20	13.3954
(((((........)))))	chr5:154173563-154173844(+)$1	1	243	261	12.9170
(..((........))..)	chr2:74592540-74592832(-)$1	1	84	102	14.3834
(((((........)))))	chr3:184043020-184043255(+)$1	1	137	155	12.9170
(((((........)))))	chr9:134350463-134350726(+)$1	1	19	37	13.3954
(.(((........))).)	chr6:56324828-56325122(-)$1	1	54	72	13.9945
(.(((........))).)	chr6:56347503-56347775(-)$1	1	197	215	14.4276
..(((........)))..	chr3:121410741-121411020(-)$1	1	243	261	14.3909
(..((........)).))	chr5:179153579-179153795(+)$1	1	144	162	14.9112
...((........))...	chr1:39775212-39775468(+)$1	1	176	194	15.2311
..(((........)))..	chrX:153583273-153583501(-)$1	1	134	152	14.6055
(((.(........).)))	chr2:232577052-232577260(+)$1	1	54	72	13.6485
.(.((........)).).	chr9:134454779-134455017(-)$1	1	140	158	14.7654
(.(((........))).)	chr17:42476193-42476464(-)$1	1	63	81	14.1937
(((((........)))))	chr9:123290000-123290284(-)$1	1	265	283	13.3954
((.((........)).))	chr2:153530009-153530255(-)$1	1	37	55	14.3674
(((((........))..)	chr5:65473241-65473570(+)$1	1	216	234	14.3850
....(........)....	chr6:56424992-56425203(-)$1	1	116	134	14.2041
.((((........)))))	chr6:56366217-56366492(-)$1	1	241	259	13.1124
(((((........)))))	chr11:129992097-129992351(+)$1	1	11	29	13.8084
(..((........)).))	chrX:39923683-39923950(-)$1	1	203	221	14.1303
..(((........)))..	chr8:124346041-124346318(-)$1	1	53	71	14.3014
...((........))..)	chr3:184039363-184039613(+)$1	1	57	75	13.9718

#PSSM
e : 0.25	b : 0.09	f : 0.08	d : 0.08	c : 0.07	g : 0.07	[ : 0.04	" : 0.04	= : 0.04	$ : 0.04	# : 0.04	! : 0.04	i : 0.02	a : 0.02	G : 0.01	% : 0.01	
e : 0.21	d : 0.16	[ : 0.11	f : 0.08	! : 0.07	g : 0.07	a : 0.05	" : 0.04	# : 0.04	b : 0.02	= : 0.02	i : 0.02	c : 0.02	$ : 0.02	
c : 0.22	[ : 0.18	e : 0.16	d : 0.09	! : 0.08	f : 0.07	g : 0.05	i : 0.02	# : 0.02	$ : 0.02	= : 0.01	" : 0.01	
b : 0.32	c : 0.21	e : 0.15	d : 0.09	f : 0.07	g : 0.04	i : 0.02	! : 0.02	= : 0.01	[ : 0.01	# : 0.01	
b : 0.32	c : 0.21	e : 0.15	d : 0.09	f : 0.07	a : 0.05	g : 0.04	i : 0.02	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
b : 0.32	c : 0.21	e : 0.15	d : 0.09	f : 0.07	a : 0.05	g : 0.04	i : 0.02	= : 0.01	
b : 0.32	c : 0.21	e : 0.15	d : 0.09	f : 0.07	g : 0.04	i : 0.02	2 : 0.02	= : 0.01	] : 0.01	4 : 0.01	
c : 0.21	] : 0.16	e : 0.15	d : 0.11	2 : 0.09	f : 0.07	g : 0.07	3 : 0.04	i : 0.02	4 : 0.02	= : 0.01	
e : 0.19	d : 0.15	] : 0.12	2 : 0.12	f : 0.07	g : 0.07	3 : 0.05	b : 0.04	4 : 0.04	a : 0.02	= : 0.02	i : 0.02	c : 0.02	
e : 0.22	d : 0.11	b : 0.08	g : 0.08	3 : 0.07	2 : 0.07	f : 0.07	c : 0.05	a : 0.04	4 : 0.04	= : 0.04	] : 0.04	i : 0.02	: : 0.01	7 : 0.01	

#score	986.2844108394613
#seq	71
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_transcript_m1_run1.txt

#BEAR
c!!a!!eeeee!!eeeeeooooooeeeee22eeeee]a2	chr20:17943385-17943616(-)$1	231	21	60	12.3197
iiiiii[bb[a[eeeeennnnneeeeea]bb]iiiiiii	chr2:86362970-86363174(+)$1	204	86	125	16.5874
gggggggccc!!a[bboooooobb]a]ccc22ggggggg	chr5:109035341-109035583(-)$1	242	57	96	12.9994
bbccc!!ddddffffffnnnnnffffff]ddddccc22b	chr14:90178775-90179003(+)$1	228	113	152	11.9885
iiiiii[bb[a[eeeeennnnneeeeea]bb]iiiiiii	chr2:86363023-86363229(+)$1	206	33	72	16.5874
============[ccclllccc333============hh	chr11:75111331-75111633(+)$1	302	62	101	11.6813
hhhhhhh####ffffffnnnnnffffff333hhhhhhhh	chr9:77414752-77414956(+)$1	204	1	40	13.8249
hhhh!!ffffff[ddddnnnnndddd]ffffff]hhhhh	chr8:100305126-100305365(+)$1	239	87	126	14.7211
eeee[eeeeeeeeee[annnnna]eeeee4444eeeeee	chr9:34270765-34271020(-)$1	255	174	213	13.7509
!!bb[============mmmm============]bb22=	chrX:118921214-118921466(-)$1	252	96	135	11.9140
b!!eeeeedddd[cccoooooocccdddd]eeeee4444	chr1:173833414-173833677(-)$1	263	65	104	11.3007
:dddd[eeeeeeeeeennnnneeeee22eeeee333ddd	chr6:52860617-52860846(+)$1	229	93	132	11.4196
gggg[bb[iiiiiiiiinnnnniiiiiiiii]bbggggg	chr17:74554816-74555047(+)$1	231	11	50	14.4187
h==========!!ddddnnnnndddd333==========	chr19:48259090-48259301(+)$1	211	82	121	16.8813
hhhh!!ffffff[eeeeellleeeee]ffffff]hhhhh	chr17:19093371-19093609(-)$1	238	66	105	12.4607
gggggggccc!!eeeeemmmmeeeee]ccc22ggggggg	chr14:50535206-50535458(+)$1	252	87	126	12.4990
[dddd!!eeeee[cccnnnnnccceeeeedddd]bb]gg	chr8:56986294-56986542(-)$1	248	77	116	12.5586
$ccc!!ffffff[ddddnnnnnddddffffffccc22a]	chr11:93466297-93466569(-)$1	272	94	133	13.3837
hhhh!!ffffff[eeeeellleeeee]ffffff]hhhhh	chr17:18965169-18965417(+)$1	248	70	109	12.4607
d[a!!dddd!!a[ddddnnnnndddda22dddd22addd	chr12:98993435-98993708(+)$1	273	20	59	13.2489
ggggg[ccc"""eeeeeooooooeeeee22ccc]ggggg	chr12:57038708-57038962(-)$1	254	112	151	14.3016
=====[eeeee[bbcccnnnnnccc]bb]eeeee]====	chr15:25296540-25296820(+)$1	280	199	238	14.6008
b!!ccc[eeeee"""bbnnnnnbb333eeeee]ccc]bb	chr17:70659985-70660255(-)$1	270	67	106	13.5683
e$$$$$eeeee"""cccooooooccc333eeeeeeeeee	chr16:71792207-71792435(-)$1	228	73	112	11.8741
cdddd[eeeee[eeeeemmmmeeeee333eeeee333dd	chr19:50000951-50001160(+)$1	209	48	87	11.5031
hhhhhhhbb"""a[cccnnnnnccc]a4444bb]hhhhh	chr18:47340468-47340708(+)$1	240	113	152	15.0537
hhhh!!ffffff[eeeeellleeeee]ffffff]hhhhh	chr17:19093409-19093624(-)$1	215	81	120	12.4607
hhh[==========[ddddllldddd22==========7	chr17:7480125-7480371(+)$1	246	52	91	11.8618
hhh!!eeeee####cccnnnnnccc4444eeeee22hhh	chr2:29150747-29151026(+)$1	279	214	253	15.1651
iiiiii[bb[a[eeeeennnnneeeeea]bb]iiiiiii	chr2:86362981-86363223(+)$1	242	75	114	16.5874
e####eeeee[a[ddddooooooddddaeeeee22eeee	chr2:21249585-21249829(-)$1	244	71	110	11.7108
hhhh!!ffffff[eeeeellleeeee]ffffff]hhhhh	chr17:19015774-19016042(-)$1	268	108	147	12.4607
!!ccc!!ddddccc[bbnnnnnbb]ccc]ddddccc]dd	chr6:76364860-76365115(-)$1	255	134	173	13.6934
!!eeeeebbadddd[bbnnnnnbbdddd22a]bb]eeee	chr2:76672259-76672463(-)$1	204	38	77	13.2289
eeee!!eeeee"""cccooooooccc]eeeeeeeeee]d	chr2:207026505-207026771(+)$1	266	119	158	12.7616
!!eeeeebbadddd[bbnnnnnbbdddd22a]bb]eeee	chr2:76672288-76672499(-)$1	211	74	113	13.2289
$eeeeeddddcccddddnnnnndddd4444ccc]dddd]	chr2:29136429-29136643(+)$1	214	120	159	12.8582
[ccc[gggggggccc[ammmma]ccc22ggggggg]ccc	chr11:62622706-62622931(-)$1	225	77	116	11.6545
iiiiiiii####eeeeeooooooeeeee]iiiiiiiii]	chr11:62622675-62622904(-)$1	229	181	220	14.9258
gggggggccc!!a[cccmmmmccc]a]ccc22ggggggg	chr14:90178863-90179109(+)$1	246	0	39	12.1452
hhhhhhhh[dddd[cccnnnnnccc]dddd]hhhhhhhh	chr11:122929972-122930184(-)$1	212	147	186	14.0000
ggggggggggggg[cccnnnnnccc22gggggggFFFFF	chrX:135961256-135961527(-)$1	271	72	111	11.9311
eeeee!!eeeee[a[bboooooobb]aeeeee22eeeee	chr1:173833879-173834142(-)$1	263	37	76	11.0936
"""hhhhhhhh[eeeeennnnneeeee22hhhhhhhh44	chr2:207026958-207027171(+)$1	213	97	136	14.2658
hhhhhhhh[dddd[cccnnnnnccc]dddd]hhhhhhhh	chr11:122929940-122930172(-)$1	232	135	174	14.0000
============[cccooooooccc]============I	chr1:76252677-76252915(+)$1	238	13	52	13.2193
:hhhhhhhha"""ddddnnnnndddd333a]hhhhhhhh	chr2:203157676-203157954(+)$1	278	77	116	14.4564
hhhhhhh####ffffffnnnnnffffff333hhhhhhhh	chr9:77414741-77414948(+)$1	207	12	51	13.8249
!!eeeeebbadddd[bbnnnnnbbdddd22a]bb]eeee	chr2:76672299-76672512(-)$1	213	87	126	13.2289
dd[hhhhhhhhdddd[annnnna]dddd22hhhhhhhh]	chr17:38183704-38183961(-)$1	257	61	100	13.1844
!!eeeeebbadddd[bbnnnnnbbdddd22a]bb]eeee	chr2:76672263-76672488(-)$1	225	63	102	13.2289
bbccc!!eeeeeeeeeennnnneeeee]eeeeeccc22b	chr11:100710382-100710627(+)$1	245	12	51	14.2209
dddd!!ccca[ccc[cccmmmmccc]ccc]a]ccc4444	chr18:47015509-47015779(-)$1	270	93	132	10.1770
b!!eeeeeiiiiiiiiinnnnniiiiiiiii333eeeee	chr11:75115434-75115678(+)$1	244	79	118	14.3715
"ccc!!eeeeeeeeeennnnneeeee]eeeeeccc]ddd	chr7:3038689-3038937(+)$1	248	74	113	13.6452
iiiiii[bb[a[eeeeennnnneeeeea]bb]iiiiiii	chr2:86362978-86363181(+)$1	203	78	117	16.5874
gggggggccc!!a[bboooooobb]a]ccc22ggggggg	chr5:109035383-109035635(-)$1	252	109	148	12.9994
bbccc!!ddddccc[bbnnnnnbb]ccc]ddddccc22b	chr4:4922641-4922843(-)$1	202	86	125	12.5091
!!bb[============mmmm============]bb22=	chrX:118921266-118921524(-)$1	258	154	193	11.9140
"""hhhhhhhh[eeeeennnnneeeee22hhhhhhhh44	chr2:207026971-207027184(+)$1	213	84	123	14.2658

#otherMatches

#Seq PSSM
AGCCUUGUGAAAUGAUGAUUCAGUUUAUCCAUUCGCUGA	chr20:17943385-17943616(-)$1	231	21	60	12.3197
UUUCUCCUUUGUCCUGCAUGUGGCAGGCUGAUGGGGAGC	chr2:86362970-86363174(+)$1	204	86	125	16.5874
ggcgaucuggcugcgaaaucugucaccccauugaucgcc	chr5:109035341-109035583(-)$1	242	57	96	12.9994
ccccauugaucgccaggguugauuuggcugaucuggcug	chr14:90178775-90179003(+)$1	228	113	152	11.9885
UUUCUCCUUUGUCCUGCAUGUGGCAGGCUGAUGGGGAGC	chr2:86363023-86363229(+)$1	206	33	72	16.5874
UAGAGCAGUUUCUUGUUUUGCAUGUGGAACUGUUUUAAA	chr11:75111331-75111633(+)$1	302	62	101	11.6813
UCACAGAUUCCUCUGGGAAGACCCCAGAUCUUCUGUGAG	chr9:77414752-77414956(+)$1	204	1	40	13.8249
gggaucauuucuauaguuuguuacuagagaaguuucucu	chr8:100305126-100305365(+)$1	239	87	126	14.7211
ugcccaggcuggucucgaacuccuaggcucaagagucug	chr9:34270765-34271020(-)$1	255	174	213	13.7509
AUUUUUGAUUUUGCCUUUAUGAGGGUAAAAUCAUGACAG	chrX:118921214-118921466(-)$1	252	96	135	11.9140
CUUUUGGUACAUGUGAUGAUUUUCAGUGUAACCAAUGAU	chr1:173833414-173833677(-)$1	263	65	104	11.3007
ccaaaugaggcgcugcauguggcagucugccuuucuuuu	chr6:52860617-52860846(+)$1	229	93	132	11.4196
CAAAUGAAUUUUGGAUCGCUAGGAUUUAGGAAUCUUUGU	chr17:74554816-74555047(+)$1	231	11	50	14.4187
UGCCCCUGGGCUGGGCCAGUGGGGCCAAUGCCCAGGGGC	chr19:48259090-48259301(+)$1	211	82	121	16.8813
gggaucauuucuauaguguguuacuagagaaguuucucu	chr17:19093371-19093609(-)$1	238	66	105	12.4607
ggugaucuggcugugacaucugucacuccauugaucgcc	chr14:50535206-50535458(+)$1	252	87	126	12.4990
ACAGCUGGCGAUGAGGAGGUACCUAUUGUGUUGAGUAAC	chr8:56986294-56986542(-)$1	248	77	116	12.5586
AUGAUUACAGUUCAGAUGAUGAAUUUAACUGUUCAACUG	chr11:93466297-93466569(-)$1	272	94	133	13.3837
gggaucauuucuauaguguguuacuagagaaguuucucu	chr17:18965169-18965417(+)$1	248	70	109	12.4607
GAGUUCCACUUGUAAACUUCUUGUUUCUUGUGGUUCCAG	chr12:98993435-98993708(+)$1	273	20	59	13.2489
CUUCUGAGUUUGCUGAAGCCACAUUUAGGUACUGAGAAG	chr12:57038708-57038962(-)$1	254	112	151	14.3016
CCUGUAGGAGUGAGGGACAACUUCCACUGAUUCCCAUAG	chr15:25296540-25296820(+)$1	280	199	238	14.6008
gcuccaugugcgucccucccgaagcugugcacuugguug	chr17:70659985-70660255(-)$1	270	67	106	13.5683
GAUCCAUCGGCUAAGUGUCUUGUCACAAUGCUGACACUC	chr16:71792207-71792435(-)$1	228	73	112	11.8741
AUGGUCUUCAGAUGCCCACGUGGGCACUGCUGAGAAAGC	chr19:50000951-50001160(+)$1	209	48	87	11.5031
GCUUGCCCGGAGCCUGAGAGGAUUAUGAAAACGUGGCGA	chr18:47340468-47340708(+)$1	240	113	152	15.0537
gggaucauuucuauaguguguuacuagagaaguuucucu	chr17:19093409-19093624(-)$1	215	81	120	12.4607
CAGUGCAGCCCUGGCAGUGUCCUACUUCCCAGGGCUGUU	chr17:7480125-7480371(+)$1	246	52	91	11.8618
UGAUAGUCAUUAUAACUGCCUAAGUGUUUAUGAUCUUCA	chr2:29150747-29151026(+)$1	279	214	253	15.1651
UUUCUCCUUUGUCCUGCAUGUGGCAGGCUGAUGGGGAGC	chr2:86362981-86363223(+)$1	242	75	114	16.5874
AACAAAGCUUUGUACUGGGUUAAUGGUCAAGUUCCUGAU	chr2:21249585-21249829(-)$1	244	71	110	11.7108
gggaucauuucuauaguguguuacuagagaaguuucuuu	chr17:19015774-19016042(-)$1	268	108	147	12.4607
ccccauugaucgccagggguaacugggcugaucuggcug	chr6:76364860-76365115(-)$1	255	134	173	13.6934
ugcgucccucccgaagcugcgcgcucggucgaagaggac	chr2:76672259-76672463(-)$1	204	38	77	13.2289
AAAUCACCAUCUUUCGGCUGAGUUCGUGAUGGAUUUGCU	chr2:207026505-207026771(+)$1	266	119	158	12.7616
ugcgucccucccgaagcugcgcgcucggucgaagaggac	chr2:76672288-76672499(-)$1	211	74	113	13.2289
UAUUGUGGUUUCGACUCACUGAGAGUAAAAUGAGGACCU	chr2:29136429-29136643(+)$1	214	120	159	12.8582
GAGUGUGUGGAAGUUGCUACGGGGAUGAUUUUACGAACU	chr11:62622706-62622931(-)$1	225	77	116	11.6545
GUCUGAGGUGUUAGUGAAGGGUGUUAUUUUUUCAGAUGU	chr11:62622675-62622904(-)$1	229	181	220	14.9258
ggcgaucuggcugcgacaucugucaccccauugaucgcc	chr14:90178863-90179109(+)$1	246	0	39	12.1452
AGUUAAAACAGGAGCUAUGUACUGGGUUUUCUUUUAACU	chr11:122929972-122930184(-)$1	212	147	186	14.0000
CUGGGCUAUUAUAAUUAAAAUAUAAGCUAUGAUGAAUUU	chrX:135961256-135961527(-)$1	271	72	111	11.9311
ggauuacaggcgugagccaccaugccccgccUCAAGUCU	chr1:173833879-173834142(-)$1	263	37	76	11.0936
AGUGGGUAUAUAUGUGUGACAGACACAAGAUGUAUCUGU	chr2:207026958-207027171(+)$1	213	97	136	14.2658
AGUUAAAACAGGAGCUAUGUACUGGGUUUUCUUUUAACU	chr11:122929940-122930172(-)$1	232	135	174	14.0000
GUUUAUUUUUUACUUAUCUUUUUGAAUGAAAAGUGAACA	chr1:76252677-76252915(+)$1	238	13	52	13.2193
GGGAGAUCACUAAGGGCCAAGUGUUCAAUGAUGAUUUCU	chr2:203157676-203157954(+)$1	278	77	116	14.4564
UCACAGAUUCCUCUGGGAAGACCCCAGAUCUUCUGUGAG	chr9:77414741-77414948(+)$1	207	12	51	13.8249
ugcgucccucccgaagcugcgcgcucggucgaagaggac	chr2:76672299-76672512(-)$1	213	87	126	13.2289
UUUGGUCUCAAGGAAGGGAUGAUGUUCCAGUUGAGACUC	chr17:38183704-38183961(-)$1	257	61	100	13.1844
ugcgucccucccgaagcugcgcgcucggucgaagaggac	chr2:76672263-76672488(-)$1	225	63	102	13.2289
ccccauugauuaccaggguugauuuggcugaucuggcug	chr11:100710382-100710627(+)$1	245	12	51	14.2209
AUUUGUGGUUGCUGUGAUGACUAUCUUAGGACACCUUUG	chr18:47015509-47015779(-)$1	270	93	132	10.1770
GUCCUUGUCAGUGCCAUGUUCUGUGGUGCUGUGCACGAG	chr11:75115434-75115678(+)$1	244	79	118	14.3715
cccauugaucaccagaguugauuuggcugaucugguugg	chr7:3038689-3038937(+)$1	248	74	113	13.6452
UUUCUCCUUUGUCCUGCAUGUGGCAGGCUGAUGGGGAGC	chr2:86362978-86363181(+)$1	203	78	117	16.5874
ggcgaucuggcugcgaaaucugucaccccauugaucgcc	chr5:109035383-109035635(-)$1	252	109	148	12.9994
ccccauugaucgccaaaguugauucggcugaucuggcug	chr4:4922641-4922843(-)$1	202	86	125	12.5091
AUUUUUGAUUUUGCCUUUAUGAGGGUAAAAUCAUGACAG	chrX:118921266-118921524(-)$1	258	154	193	11.9140
AGUGGGUAUAUAUGUGUGACAGACACAAGAUGUAUCUGU	chr2:207026971-207027184(+)$1	213	84	123	14.2658

#DB
(..(..(((((..(((((......)))))..))))).).	chr20:17943385-17943616(-)$1	1	21	60	12.3197
((((((.((.(.(((((.....)))))).)).)))))))	chr2:86362970-86363174(+)$1	1	86	125	16.5874
((((((((((..(.((......)).).)))..)))))))	chr5:109035341-109035583(-)$1	1	57	96	12.9994
(((((..((((((((((.....)))))).)))))))..)	chr14:90178775-90179003(+)$1	1	113	152	11.9885
((((((.((.(.(((((.....)))))).)).)))))))	chr2:86363023-86363229(+)$1	1	33	72	16.5874
((((((((((((.(((...)))...))))))))))))((	chr11:75111331-75111633(+)$1	1	62	101	11.6813
(((((((....((((((.....))))))...))))))))	chr9:77414752-77414956(+)$1	1	1	40	13.8249
((((..((((((.((((.....)))).)))))).)))))	chr8:100305126-100305365(+)$1	1	87	126	14.7211
((((.((((((((((.(.....).)))))....))))))	chr9:34270765-34271020(-)$1	1	174	213	13.7509
..((.((((((((((((....)))))))))))).))..)	chrX:118921214-118921466(-)$1	1	96	135	11.9140
(..(((((((((.(((......))))))).)))))....	chr1:173833414-173833677(-)$1	1	65	104	11.3007
.((((.((((((((((.....)))))..)))))...)))	chr6:52860617-52860846(+)$1	1	93	132	11.4196
((((.((.(((((((((.....))))))))).)))))))	chr17:74554816-74555047(+)$1	1	11	50	14.4187
)((((((((((..((((.....))))...))))))))))	chr19:48259090-48259301(+)$1	1	82	121	16.8813
((((..((((((.(((((...))))).)))))).)))))	chr17:19093371-19093609(-)$1	1	66	105	12.4607
((((((((((..(((((....))))).)))..)))))))	chr14:50535206-50535458(+)$1	1	87	126	12.4990
.((((..(((((.(((.....)))))))))))).)).))	chr8:56986294-56986542(-)$1	1	77	116	12.5586
.(((..((((((.((((.....)))))))))))))..).	chr11:93466297-93466569(-)$1	1	94	133	13.3837
((((..((((((.(((((...))))).)))))).)))))	chr17:18965169-18965417(+)$1	1	70	109	12.4607
(.(..((((..(.((((.....)))))..))))..))))	chr12:98993435-98993708(+)$1	1	20	59	13.2489
(((((.(((...(((((......)))))..))).)))))	chr12:57038708-57038962(-)$1	1	112	151	14.3016
(((((.(((((.(((((.....))).)).))))).))))	chr15:25296540-25296820(+)$1	1	199	238	14.6008
(..(((.(((((...((.....))...))))).))).))	chr17:70659985-70660255(-)$1	1	67	106	13.5683
(.....(((((...(((......)))...))))))))))	chr16:71792207-71792435(-)$1	1	73	112	11.8741
(((((.(((((.(((((....)))))...)))))...))	chr19:50000951-50001160(+)$1	1	48	87	11.5031
(((((((((...(.(((.....))).)....)).)))))	chr18:47340468-47340708(+)$1	1	113	152	15.0537
((((..((((((.(((((...))))).)))))).)))))	chr17:19093409-19093624(-)$1	1	81	120	12.4607
(((.((((((((((.((((...))))..)))))))))).	chr17:7480125-7480371(+)$1	1	52	91	11.8618
(((..(((((....(((.....)))....)))))..)))	chr2:29150747-29151026(+)$1	1	214	253	15.1651
((((((.((.(.(((((.....)))))).)).)))))))	chr2:86362981-86363223(+)$1	1	75	114	16.5874
(....(((((.(.((((......))))))))))..))))	chr2:21249585-21249829(-)$1	1	71	110	11.7108
((((..((((((.(((((...))))).)))))).)))))	chr17:19015774-19016042(-)$1	1	108	147	12.4607
..(((..(((((((.((.....)).))).))))))).))	chr6:76364860-76365115(-)$1	1	134	173	13.6934
..((((((((((((.((.....))))))..).)).))))	chr2:76672259-76672463(-)$1	1	38	77	13.2289
((((..(((((...(((......))).)))))))))).)	chr2:207026505-207026771(+)$1	1	119	158	12.7616
..((((((((((((.((.....))))))..).)).))))	chr2:76672288-76672499(-)$1	1	74	113	13.2289
.((((((((((((((((.....))))....))).)))).	chr2:29136429-29136643(+)$1	1	120	159	12.8582
.(((.((((((((((.(....).)))..))))))).)))	chr11:62622706-62622931(-)$1	1	77	116	11.6545
((((((((....(((((......))))).))))))))).	chr11:62622675-62622904(-)$1	1	181	220	14.9258
((((((((((..(.(((....))).).)))..)))))))	chr14:90178863-90179109(+)$1	1	0	39	12.1452
((((((((.((((.(((.....))).)))).))))))))	chr11:122929972-122930184(-)$1	1	147	186	14.0000
))))))(((((((.(((.....)))..))))))))))))	chrX:135961256-135961527(-)$1	1	72	111	11.9311
(((((..(((((.(.((......)).))))))..)))))	chr1:173833879-173834142(-)$1	1	37	76	11.0936
...((((((((.(((((.....)))))..))))))))..	chr2:207026958-207027171(+)$1	1	97	136	14.2658
((((((((.((((.(((.....))).)))).))))))))	chr11:122929940-122930172(-)$1	1	135	174	14.0000
((((((((((((.(((......))).))))))))))))(	chr1:76252677-76252915(+)$1	1	13	52	13.2193
.(((((((((...((((.....))))...).))))))))	chr2:203157676-203157954(+)$1	1	77	116	14.4564
(((((((....((((((.....))))))...))))))))	chr9:77414741-77414948(+)$1	1	12	51	13.8249
..((((((((((((.((.....))))))..).)).))))	chr2:76672299-76672512(-)$1	1	87	126	13.2289
((.((((((((((((.(.....).))))..)))))))).	chr17:38183704-38183961(-)$1	1	61	100	13.1844
..((((((((((((.((.....))))))..).)).))))	chr2:76672263-76672488(-)$1	1	63	102	13.2289
(((((..((((((((((.....))))).))))))))..)	chr11:100710382-100710627(+)$1	1	12	51	14.2209
((((..((((.(((.(((....))).))).).)))....	chr18:47015509-47015779(-)$1	1	93	132	10.1770
(..((((((((((((((.....)))))))))...)))))	chr11:75115434-75115678(+)$1	1	79	118	14.3715
.(((..((((((((((.....))))).)))))))).)))	chr7:3038689-3038937(+)$1	1	74	113	13.6452
((((((.((.(.(((((.....)))))).)).)))))))	chr2:86362978-86363181(+)$1	1	78	117	16.5874
((((((((((..(.((......)).).)))..)))))))	chr5:109035383-109035635(-)$1	1	109	148	12.9994
(((((..(((((((.((.....)).))).)))))))..)	chr4:4922641-4922843(-)$1	1	86	125	12.5091
..((.((((((((((((....)))))))))))).))..)	chrX:118921266-118921524(-)$1	1	154	193	11.9140
...((((((((.(((((.....)))))..))))))))..	chr2:207026971-207027184(+)$1	1	84	123	14.2658

#PSSM
h : 0.21	g : 0.11	! : 0.11	b : 0.09	i : 0.08	e : 0.08	= : 0.05	d : 0.05	" : 0.05	c : 0.03	: : 0.03	[ : 0.03	$ : 0.03	
h : 0.21	! : 0.18	g : 0.11	i : 0.08	d : 0.08	= : 0.06	e : 0.06	b : 0.05	c : 0.05	" : 0.03	[ : 0.01	$ : 0.01	# : 0.01	
h : 0.21	e : 0.13	g : 0.11	c : 0.11	i : 0.08	! : 0.06	= : 0.06	d : 0.06	b : 0.03	" : 0.03	a : 0.01	$ : 0.01	# : 0.01	[ : 0.01	
h : 0.23	e : 0.16	c : 0.13	g : 0.11	i : 0.08	= : 0.06	d : 0.06	b : 0.03	! : 0.03	a : 0.01	$ : 0.01	[ : 0.01	# : 0.01	
! : 0.19	h : 0.15	e : 0.13	g : 0.09	i : 0.08	c : 0.08	= : 0.08	[ : 0.08	d : 0.05	$ : 0.01	# : 0.01	
! : 0.26	e : 0.16	h : 0.15	g : 0.09	= : 0.09	i : 0.08	[ : 0.06	b : 0.01	d : 0.01	c : 0.01	$ : 0.01	
e : 0.26	h : 0.15	g : 0.09	! : 0.09	= : 0.09	f : 0.09	[ : 0.08	d : 0.03	c : 0.03	b : 0.01	i : 0.01	
e : 0.26	b : 0.15	c : 0.09	= : 0.09	f : 0.09	h : 0.09	d : 0.08	# : 0.03	g : 0.03	[ : 0.01	i : 0.01	
e : 0.23	b : 0.15	c : 0.09	d : 0.09	= : 0.09	f : 0.09	h : 0.06	# : 0.05	i : 0.03	g : 0.03	[ : 0.03	
e : 0.23	d : 0.11	= : 0.09	f : 0.09	a : 0.09	[ : 0.06	c : 0.06	# : 0.05	h : 0.05	i : 0.03	" : 0.03	g : 0.03	! : 0.01	
e : 0.19	d : 0.16	= : 0.09	f : 0.09	! : 0.08	a : 0.06	# : 0.06	" : 0.05	h : 0.05	i : 0.03	[ : 0.03	g : 0.03	c : 0.01	
f : 0.15	[ : 0.13	d : 0.13	e : 0.11	! : 0.09	= : 0.08	" : 0.08	c : 0.06	i : 0.03	a : 0.03	# : 0.03	g : 0.03	
e : 0.23	[ : 0.21	d : 0.11	c : 0.08	a : 0.06	" : 0.06	f : 0.05	= : 0.05	! : 0.03	i : 0.03	b : 0.01	# : 0.01	g : 0.01	
e : 0.31	d : 0.19	c : 0.13	[ : 0.11	f : 0.05	= : 0.05	" : 0.05	i : 0.03	b : 0.01	# : 0.01	a : 0.01	
e : 0.31	c : 0.23	[ : 0.15	d : 0.13	f : 0.05	b : 0.03	= : 0.03	i : 0.03	" : 0.01	
e : 0.30	c : 0.23	b : 0.16	d : 0.13	f : 0.05	[ : 0.05	= : 0.03	i : 0.03	
e : 0.26	c : 0.16	d : 0.13	b : 0.13	o : 0.06	f : 0.05	a : 0.05	n : 0.05	= : 0.03	i : 0.03	l : 0.01	
n : 0.60	o : 0.16	m : 0.09	e : 0.08	l : 0.01	d : 0.01	c : 0.01	
n : 0.60	o : 0.18	m : 0.11	l : 0.08	d : 0.01	
n : 0.60	o : 0.18	m : 0.11	l : 0.08	c : 0.01	
n : 0.60	o : 0.18	m : 0.11	l : 0.08	c : 0.01	
n : 0.55	o : 0.18	e : 0.13	c : 0.05	= : 0.03	l : 0.01	a : 0.01	m : 0.01	
e : 0.24	c : 0.18	b : 0.15	o : 0.11	d : 0.11	f : 0.05	a : 0.03	= : 0.03	i : 0.03	3 : 0.01	] : 0.01	
e : 0.28	c : 0.23	b : 0.16	d : 0.13	f : 0.05	] : 0.03	= : 0.03	i : 0.03	o : 0.01	3 : 0.01	
e : 0.33	d : 0.21	c : 0.19	] : 0.08	f : 0.05	3 : 0.03	= : 0.03	i : 0.03	b : 0.01	
e : 0.33	d : 0.23	] : 0.11	c : 0.08	a : 0.05	f : 0.05	= : 0.05	i : 0.03	3 : 0.01	4 : 0.01	2 : 0.01	
e : 0.19	] : 0.18	d : 0.15	3 : 0.08	f : 0.06	= : 0.06	2 : 0.06	a : 0.05	c : 0.05	i : 0.03	4 : 0.03	b : 0.01	
e : 0.15	f : 0.15	d : 0.13	c : 0.11	2 : 0.09	a : 0.08	= : 0.06	3 : 0.06	4 : 0.05	i : 0.03	b : 0.01	g : 0.01	] : 0.01	
e : 0.16	] : 0.15	2 : 0.15	3 : 0.09	f : 0.09	c : 0.08	= : 0.08	d : 0.05	4 : 0.05	i : 0.03	g : 0.03	
e : 0.18	2 : 0.11	d : 0.11	= : 0.09	f : 0.09	b : 0.06	c : 0.06	4 : 0.05	i : 0.05	3 : 0.03	] : 0.03	g : 0.03	h : 0.03	a : 0.01	
e : 0.19	= : 0.09	f : 0.09	2 : 0.08	d : 0.08	a : 0.08	b : 0.06	i : 0.05	] : 0.05	h : 0.05	3 : 0.03	4 : 0.03	c : 0.03	g : 0.03	
e : 0.21	] : 0.16	h : 0.13	= : 0.09	f : 0.09	d : 0.08	2 : 0.06	c : 0.03	g : 0.03	4 : 0.01	b : 0.01	i : 0.01	3 : 0.01	
e : 0.16	h : 0.13	g : 0.09	= : 0.09	b : 0.09	i : 0.08	d : 0.08	f : 0.08	c : 0.08	4 : 0.01	] : 0.01	2 : 0.01	3 : 0.01	
] : 0.18	e : 0.13	c : 0.13	h : 0.13	g : 0.09	i : 0.08	b : 0.08	= : 0.06	2 : 0.05	3 : 0.03	
h : 0.23	c : 0.13	e : 0.11	g : 0.11	i : 0.08	] : 0.08	= : 0.06	b : 0.05	2 : 0.05	3 : 0.03	d : 0.01	F : 0.01	
h : 0.23	e : 0.18	g : 0.09	i : 0.08	c : 0.08	= : 0.08	b : 0.05	4 : 0.03	3 : 0.03	2 : 0.03	] : 0.03	a : 0.01	d : 0.01	F : 0.01	
h : 0.24	e : 0.16	g : 0.09	2 : 0.09	i : 0.08	= : 0.08	] : 0.06	d : 0.06	4 : 0.03	3 : 0.01	c : 0.01	F : 0.01	
h : 0.23	e : 0.15	g : 0.11	d : 0.09	i : 0.08	2 : 0.08	4 : 0.06	= : 0.06	a : 0.03	b : 0.01	] : 0.01	c : 0.01	F : 0.01	
h : 0.21	e : 0.15	g : 0.11	d : 0.09	i : 0.06	b : 0.06	= : 0.06	4 : 0.06	] : 0.06	2 : 0.01	7 : 0.01	c : 0.01	F : 0.01	I : 0.01	

#score	799.7771137917384
#seq	60
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_UTR_m1_run1.txt

#BEAR
biiiiiiiiiccc[bbnnnnnbbccc4444iiiii	chr3:122786079-122786352(+)$1	273	34	69	13.9325
ggbb[a!!a"""ddddnnnnndddd333a]a]bb]	chr19:39833103-39833387(+)$1	284	205	240	12.4533
=======!!bb!!cccnnnnnccc22bb22=====	chr16:87426116-87426425(+)$1	309	131	166	16.6065
=====ffffff!!cccnnnnnccc22ffffff444	chr19:4044379-4044682(-)$1	303	130	165	13.9506
hhggggggg"""cccooooooccc22ggggggg44	chr1:90287387-90287657(+)$1	270	76	111	16.1333
d"""cccbb[bb[cccooooooccc]bb]bb]ccc	chr2:174828659-174828909(-)$1	250	88	123	12.8885
dddd[dddd"""cccooooooccc333dddd22dd	chr16:30958987-30959239(+)$1	252	59	94	12.7044
eeiiiiiiiii!!cccnnnnnccc22iiiiiiiii	chr5:176738809-176739110(-)$1	301	182	217	17.3498
dddd[ggggggg[cccnnnnnccc]gggggggddd	chr12:120654360-120654619(-)$1	259	18	53	14.1757
gggggg[eeeee!!cccmmmmccc22eeeee]ggg	chr16:88744533-88744789(+)$1	256	61	96	12.8342
:===========ddddmmmmdddd]==========	chr7:139876604-139876843(-)$1	239	147	182	13.4964
"""cccccc[ccccccnnnnnccc]ccc]ccc]cc	chr6:111136244-111136498(-)$1	254	17	52	14.0619
gggggg[bb[bb!!bboooooobb22bb22bbggg	chr3:195622227-195622533(-)$1	306	150	185	12.9651
eee$$$$$ccc[cccooooooccc]ccc22eeeee	chr2:97535530-97535829(-)$1	299	105	140	12.4401
ggggggg"""ccc[cccmmmmccc]ccc4444ggg	chr19:42788118-42788373(+)$1	255	95	130	13.5570
hhhhhh!!ccc!!cccoooooocccccc]hhhhhh	chr8:101962988-101963288(-)$1	300	148	183	13.7139
iiiiiiiii[bb####bblllbb333bbiiiiiii	chr17:79876212-79876517(-)$1	305	193	228	13.1592
iiiiiii[bb"""ddddmmmmdddd]bb]iiiiii	chr1:202776256-202776489(-)$1	233	72	107	12.8886
[=============qqqqqqqq=============	chr7:111202226-111202536(-)$1	310	70	105	12.4798
iiiiiiiii[eeeeeooooooeeeee]iiiiiiii	chr16:18936910-18937197(-)$1	287	88	123	14.4918
!bb[iiiiiiiii[cccmmmmccc22iiiiiiiii	chr19:18718214-18718542(+)$1	328	177	212	15.0052
:ggggggg[ccc[cccnnnnnccc]ccc]gggggg	chr1:16450959-16451215(-)$1	256	38	73	14.8531
gggggg[a[gggggggnnnnnggggggg]aggggg	chr3:98451573-98451827(+)$1	254	107	142	14.6158
c"""dddd[ccccccooooooccc333ccc]dddd	chr6:30852101-30852390(+)$1	289	152	187	13.7478
Fiiiiiiiii!!a[cccmmmmccc]a22iiiiiii	chr19:42788491-42788758(+)$1	267	230	265	14.5808
cc[a"""eeeeecccooooooccc]eeeee22a]c	chr17:39942645-39942911(-)$1	266	51	86	12.8097
ggggggccc!!a[cccmmmmccc]a22ccc22ggg	chr17:74380176-74380436(+)$1	260	65	100	12.5470
##dddd[a[gggggggnnnnnggggggg]adddd]	chr19:6424230-6424494(-)$1	264	208	243	11.9489
cc[hhhhhhhh!!cccnnnnnccchhhhhhhh]cc	chr20:62369626-62369881(+)$1	255	82	117	12.4813
:ccciiiiiiiii[bboooooobb]iiiiiiiii5	chr2:101436529-101436765(+)$1	236	125	160	13.5003
eeeee[bb[ccc[cccooooooccc]ccc]bb]ee	chr16:75298028-75298268(-)$1	240	140	175	12.8309
:==========####ammmma333==========h	chr22:39131822-39132118(-)$1	296	171	206	14.0147
ggggg[ffffff[a!!aooooooa22a]ffffffg	chr16:4660768-4661040(-)$1	272	75	110	12.6576
cc[a[ccc[gggggggnnnnnggggggg22ccc]a	chr7:27153319-27153584(-)$1	265	31	66	13.1185
==========!!ddddmmmmdddd]==========	chr2:241569142-241569400(+)$1	258	103	138	14.6798
"ggggggg####ddddmmmmdddd22ggggggg]d	chr11:118780914-118781192(-)$1	278	120	155	12.6260
ggg==============mmmm==============	chr2:97525790-97526106(-)$1	316	61	96	15.5453
ffff[bb[bb!!cccooooooccc22bbbbfffff	chr9:138371604-138371860(+)$1	256	149	184	12.6129
===========!!ddddllldddd22=========	chr5:139039028-139039274(+)$1	246	208	243	15.6467
===========[eeeeemmmmeeeee=========	chr14:67708456-67708736(+)$1	280	88	123	13.4061
b[bb[ggggggg[a!!aooooooa22aggggggg]	chr3:9957720-9958005(+)$1	285	143	178	14.1437
gggggg[eeeee[bboooooobb333eeeeegggg	chr7:27153248-27153519(-)$1	271	75	110	13.3150
gg"""ffffff[a[aooooooa]a]ffffffgggg	chr2:159314539-159314796(+)$1	257	98	133	13.0759
FFFccc[iiiiiiiiiooooooiiiiiiiii]ccc	chr8:145064811-145065104(+)$1	293	118	153	13.6691
iiiiiiii"""ffffffmmmmffffff333iiiii	chr6:31605346-31605619(+)$1	273	91	126	12.2338
iiiiiiidddd[cccoooooocccdddd]iiiiii	chr16:2029107-2029382(+)$1	275	20	55	14.9302
cc[ggggggg!!cccooooooccc22ggggggg]c	chr3:52327411-52327679(+)$1	268	89	124	16.6593
==========[cccpppppppccc]==========	chr3:48470698-48470950(-)$1	252	133	168	12.4447
dddd"""a[gggggggnnnnnggggggg]a333dd	chr11:867840-868108(-)$1	268	100	135	12.7217
:dddd[==========nnnnn==========]ddd	chr2:242707475-242707723(+)$1	248	139	174	13.3623
ddd[ccc!!ccc[cccooooooccc]ccc]cccdd	chr4:124319278-124319537(+)$1	259	87	122	13.8622
gggggg[iiiiiiiiinnnnniiiiiiiii]gggg	chr1:200708675-200708945(+)$1	270	145	180	15.3435
iiiiiii!!bb[cccooooooccc]bb333iiiii	chr10:103603174-103603437(-)$1	263	209	244	16.4773
gg[ccc[a[dddd!!ccclllccc22ddddacccg	chr12:122238354-122238571(-)$1	217	106	141	11.8354
iiiii!!cccbboooooobb]ccc22iiiiiiiii	chr1:156219715-156219936(-)$1	221	154	189	12.0438
iiiiiii!!a!!ddddnnnnndddd22a]iiiiii	chr19:1104352-1104652(+)$1	300	204	239	15.0680
[ccc[bb[bb[a[cccnnnnnccc]a]bb]bbccc	chr10:88516558-88516889(+)$1	331	83	118	12.8461
ga[eeeee[gggggggooooooggggggg]eeeee	chr3:142443246-142443502(+)$1	256	90	125	12.6776
]ffffffiiiiiiiiiaooooooa]iiiiiiiiiE	chr19:1258090-1258362(+)$1	272	189	224	12.8646

#otherMatches

#Seq PSSM
CGCUCUCUGCUCCAGCCCUCUGCGGAACGUGCGGG	chr3:122786079-122786352(+)$1	273	34	69	13.9325
ccccucagggaccccgaaccgcgggcggcggcggc	chr19:39833103-39833387(+)$1	284	205	240	12.4533
aggccgggaccgagccgggagggccaggggcuggu	chr16:87426116-87426425(+)$1	309	131	166	16.6065
ggggcgcccgggggccggggagguggccgggccgg	chr19:4044379-4044682(-)$1	303	130	165	13.9506
CGGGUUGGGUACCGGUAUAAUCCGCUUCUAGCUUG	chr1:90287387-90287657(+)$1	270	76	111	16.1333
gggagccggggUGCUUGGAGCGGGGGACGCCAGGC	chr2:174828659-174828909(-)$1	250	88	123	12.8885
CCAGGUGUCAGAGGUAGGGGAACCAGGGGCAAGCU	chr16:30958987-30959239(+)$1	252	59	94	12.7044
UGUUUGUUGCACCGUGUCAGUUACUUUGUAACAAA	chr5:176738809-176739110(-)$1	301	182	217	17.3498
GCACCUGGGGUCCGGGUUCUUCCCUGGCCCCAGUG	chr12:120654360-120654619(-)$1	259	18	53	14.1757
GCUCUUGUUCUGAUGAAAGCCUUCCCCGGGAGAGG	chr16:88744533-88744789(+)$1	256	61	96	12.8342
uggagccgccgcggcagccgugucgguggcggcUc	chr7:139876604-139876843(-)$1	239	147	182	13.4964
GGAgcggcgggcggcgggcggcgcgcgcgcgcgcg	chr6:111136244-111136498(-)$1	254	17	52	14.0619
GCCGGCAGGAGGAGGGGCGCGACCACCCGGCCGCC	chr3:195622227-195622533(-)$1	306	150	185	12.9651
cgcggagggcuggcgggcgagcgcgggcaggcggc	chr2:97535530-97535829(-)$1	299	105	140	12.4401
gggcggggaggcgguggugguucggcgcggggcUC	chr19:42788118-42788373(+)$1	255	95	130	13.5570
GCGGGUGAGCCUGAGCAUAGCCGCUGGUGGCCCGC	chr8:101962988-101963288(-)$1	300	148	183	13.7139
GCAGGGCAGUGGCCUUGGUGCCCUACCCCUGCCCU	chr17:79876212-79876517(-)$1	305	193	228	13.1592
CUUCUUCUGGCUCAGCCGCUCGGCUCCCCGGGGAG	chr1:202776256-202776489(-)$1	233	72	107	12.8886
GCAGGGGUCGGCGGGCGCGUAGCCGCCGACCCUUG	chr7:111202226-111202536(-)$1	310	70	105	12.4798
GCGGGGAGGCGAGGCCUAAGUGCCUCCCCUCCCUG	chr16:18936910-18937197(-)$1	287	88	123	14.4918
AGCCGGGACCCAGGCCUGCGCGGGAACUGGGUCCC	chr19:18718214-18718542(+)$1	328	177	212	15.0052
UGGGCCUUUGCAAGAUGCUUGGUUGUGUUGAGGUU	chr1:16450959-16451215(-)$1	256	38	73	14.8531
CUGCCGGCCUCGGGCUUCUGCGGCCCGAUGUGGCA	chr3:98451573-98451827(+)$1	254	107	142	14.6158
cgagggggaggcggCGCCUGGGCCCGAGCCGCCCC	chr6:30852101-30852390(+)$1	289	152	187	13.7478
gggggggggcAUGCGGCGACGGCCUCCCGCUCCCC	chr19:42788491-42788758(+)$1	267	230	265	14.5808
ccggucaggcccCAUACUCAGGUGCGGGCUAUCGG	chr17:39942645-39942911(-)$1	266	51	86	12.8097
GGCGCCGACAGCACCCGCGGGGGCGAGGUCGUGGC	chr17:74380176-74380436(+)$1	260	65	100	12.5470
CGGGUGACCCCCCUGCAGGGAGUAGGGGCGCACUG	chr19:6424230-6424494(-)$1	264	208	243	11.9489
GUGGGGCUGGCGGCCCUUCCCGGGGUCAGCCUGGC	chr20:62369626-62369881(+)$1	255	82	117	12.4813
CCCGCGCGGCUGCGGCCCAGGAGCGGCGGCCGCGG	chr2:101436529-101436765(+)$1	236	125	160	13.5003
GGGCAUGGAGUCUGGGAUGGCACCCUGACCCCUUG	chr16:75298028-75298268(-)$1	240	140	175	12.8309
GCUGGUGCCUGGGAGCUGAUGAAGCAGGUGCCAGG	chr22:39131822-39132118(-)$1	296	171	206	14.0147
cuagaaucuccugaAACGGGGCAGGGUGGGGAGGU	chr16:4660768-4661040(-)$1	272	75	110	12.6576
CCGCGGCUGCUGCCCUCgggaagggcagggggcgg	chr7:27153319-27153584(-)$1	265	31	66	13.1185
GGGUGUGGGGUCGGGGCUCACCUCCUCCCACAUCC	chr2:241569142-241569400(+)$1	258	103	138	14.6798
GUGAGGGGCGCGUCUGGGAGCAGGAAUCCCUCAGG	chr11:118780914-118781192(-)$1	278	120	155	12.6260
uguguguguaugugugugugCACGCGCGUGCGCGC	chr2:97525790-97526106(-)$1	316	61	96	15.5453
gcggagcgcgcuggcccugcagccuccggcccgcc	chr9:138371604-138371860(+)$1	256	149	184	12.6129
GCCCUCCGGAAGGUCCUCCUGGGAGGUUCCGGGGG	chr5:139039028-139039274(+)$1	246	208	243	15.6467
UGCAGGGGGCGCGGCGGGGAGUCGUCUGCCCCCUG	chr14:67708456-67708736(+)$1	280	88	123	13.4061
GAUUGCAGGGGGCGGCUGAGAGAAAACCUCCUUGG	chr3:9957720-9958005(+)$1	285	143	178	14.1437
CCGUGCUGGAGCAGCGAGGCGGCCACGCUCUGCGC	chr7:27153248-27153519(-)$1	271	75	110	13.3150
GUCAGGUGUGUGUGUACAGCGGGGGACGCGCGCUG	chr2:159314539-159314796(+)$1	257	98	133	13.0759
GGCUCCGGCCCCUUAAAGCUGCUUAAGGGGCGGGA	chr8:145064811-145065104(+)$1	293	118	153	13.6691
GGGAGGGGUUCUGGGGCUGGGGCCUCACUUCCCCU	chr6:31605346-31605619(+)$1	273	91	126	12.2338
CAGGGCCCUGCGUGUGACGGUGCAGCAGCGGCUCU	chr16:2029107-2029382(+)$1	275	20	55	14.9302
CGCCUUCCCUCAGAGUGAGGCCUCACGGGGGAGCC	chr3:52327411-52327679(+)$1	268	89	124	16.6593
GAGGGGCGGGCAGCGGGCGCAGUUUUCCGCCCCUC	chr3:48470698-48470950(-)$1	252	133	168	12.4447
CUGGAAAUGAGAUUGUGGGGUGCAGUUUGGGGAUC	chr11:867840-868108(-)$1	268	100	135	12.7217
UCUGCAGCCAUCCUGGACAGGCCGGGGUGGCGGCA	chr2:242707475-242707723(+)$1	248	139	174	13.3623
GCUGCAGAAGACCUCCCGAGGUGGAUGUUACUGAG	chr4:124319278-124319537(+)$1	259	87	122	13.8622
CGUCGGCGCCCGGGCGGACAUCGCCCGGGCCCCGA	chr1:200708675-200708945(+)$1	270	145	180	15.3435
GGGAGGGAGGGUGGAUUCCAUUCCUCCAGACCCUU	chr10:103603174-103603437(-)$1	263	209	244	16.4773
GCGCGGGCGCCCGCAGCCGAGGGCCACGGGGUCGG	chr12:122238354-122238571(-)$1	217	106	141	11.8354
CAGGGUCAGGGUUCGUGUGCUCCUCCUCCUGCUGC	chr1:156219715-156219936(-)$1	221	154	189	12.0438
GGGCGCGGAGGGCUGGAAAUCCCGGAUCAcgcgcc	chr19:1104352-1104652(+)$1	300	204	239	15.0680
GCCGAGGGCUGGAGGAUGCGUUCCCUGGGGUCCGG	chr10:88516558-88516889(+)$1	331	83	118	12.8461
GGUCGGGGUCGGGGCCGGUGGGGGCCCCGCCCCCG	chr3:142443246-142443502(+)$1	256	90	125	12.6776
CUGGGGGCCCCUCCUGCAGCGAGGAUGGGAGGGGG	chr19:1258090-1258362(+)$1	272	189	224	12.8646

#DB
(((((((((((((.((.....)))))....)))))	chr3:122786079-122786352(+)$1	1	34	69	13.9325
((((.(..(...((((.....))))...).).)).	chr19:39833103-39833387(+)$1	1	205	240	12.4533
(((((((..((..(((.....)))..))..)))))	chr16:87426116-87426425(+)$1	1	131	166	16.6065
(((((((((((..(((.....)))..))))))...	chr19:4044379-4044682(-)$1	1	130	165	13.9506
(((((((((...(((......)))..)))))))..	chr1:90287387-90287657(+)$1	1	76	111	16.1333
(...(((((.((.(((......))).)).)).)))	chr2:174828659-174828909(-)$1	1	88	123	12.8885
((((.((((...(((......)))...))))..))	chr16:30958987-30959239(+)$1	1	59	94	12.7044
(((((((((((..(((.....)))..)))))))))	chr5:176738809-176739110(-)$1	1	182	217	17.3498
((((.(((((((.(((.....))).))))))))))	chr12:120654360-120654619(-)$1	1	18	53	14.1757
((((((.(((((..(((....)))..))))).)))	chr16:88744533-88744789(+)$1	1	61	96	12.8342
.(((((((((((((((....)))).))))))))))	chr7:139876604-139876843(-)$1	1	147	182	13.4964
...((((((.((((((.....))).))).))).))	chr6:111136244-111136498(-)$1	1	17	52	14.0619
((((((.((.((..((......))..))..)))))	chr3:195622227-195622533(-)$1	1	150	185	12.9651
(((.....(((.(((......))).)))..)))))	chr2:97535530-97535829(-)$1	1	105	140	12.4401
(((((((...(((.(((....))).)))....)))	chr19:42788118-42788373(+)$1	1	95	130	13.5570
((((((..(((..(((......)))))).))))))	chr8:101962988-101963288(-)$1	1	148	183	13.7139
(((((((((.((....((...))...)))))))))	chr17:79876212-79876517(-)$1	1	193	228	13.1592
(((((((.((...((((....)))).)).))))))	chr1:202776256-202776489(-)$1	1	72	107	12.8886
.(((((((((((((........)))))))))))))	chr7:111202226-111202536(-)$1	1	70	105	12.4798
(((((((((.(((((......))))).))))))))	chr16:18936910-18937197(-)$1	1	88	123	14.4918
.((.(((((((((.(((....)))..)))))))))	chr19:18718214-18718542(+)$1	1	177	212	15.0052
.(((((((.(((.(((.....))).))).))))))	chr1:16450959-16451215(-)$1	1	38	73	14.8531
((((((.(.(((((((.....))))))).))))))	chr3:98451573-98451827(+)$1	1	107	142	14.6158
(...((((.((((((......)))...))).))))	chr6:30852101-30852390(+)$1	1	152	187	13.7478
)(((((((((..(.(((....))).)..)))))))	chr19:42788491-42788758(+)$1	1	230	265	14.5808
((.(...((((((((......))).)))))..).)	chr17:39942645-39942911(-)$1	1	51	86	12.8097
(((((((((..(.(((....))).)..)))..)))	chr17:74380176-74380436(+)$1	1	65	100	12.5470
..((((.(.(((((((.....))))))).))))).	chr19:6424230-6424494(-)$1	1	208	243	11.9489
((.((((((((..(((.....))))))))))).))	chr20:62369626-62369881(+)$1	1	82	117	12.4813
.((((((((((((.((......)).))))))))).	chr2:101436529-101436765(+)$1	1	125	160	13.5003
(((((.((.(((.(((......))).))).)).))	chr16:75298028-75298268(-)$1	1	140	175	12.8309
.((((((((((....(....)...))))))))))(	chr22:39131822-39132118(-)$1	1	171	206	14.0147
(((((.((((((.(..(......)..).)))))))	chr16:4660768-4661040(-)$1	1	75	110	12.6576
((.(.(((.(((((((.....)))))))..))).)	chr7:27153319-27153584(-)$1	1	31	66	13.1185
((((((((((..((((....)))).))))))))))	chr2:241569142-241569400(+)$1	1	103	138	14.6798
.(((((((....((((....))))..))))))).)	chr11:118780914-118781192(-)$1	1	120	155	12.6260
)))((((((((((((((....))))))))))))))	chr2:97525790-97526106(-)$1	1	61	96	15.5453
((((.((.((..(((......)))..)))))))))	chr9:138371604-138371860(+)$1	1	149	184	12.6129
(((((((((((..((((...))))..)))))))))	chr5:139039028-139039274(+)$1	1	208	243	15.6467
(((((((((((.(((((....))))))))))))))	chr14:67708456-67708736(+)$1	1	88	123	13.4061
(.((.(((((((.(..(......)..)))))))).	chr3:9957720-9958005(+)$1	1	143	178	14.1437
((((((.(((((.((......))...)))))))))	chr7:27153248-27153519(-)$1	1	75	110	13.3150
((...((((((.(.(......).).))))))))))	chr2:159314539-159314796(+)$1	1	98	133	13.0759
((((((.(((((((((......))))))))).)))	chr8:145064811-145065104(+)$1	1	118	153	13.6691
((((((((...((((((....))))))...)))))	chr6:31605346-31605619(+)$1	1	91	126	12.2338
(((((((((((.(((......))))))).))))))	chr16:2029107-2029382(+)$1	1	20	55	14.9302
((.(((((((..(((......)))..))))))).)	chr3:52327411-52327679(+)$1	1	89	124	16.6593
((((((((((.(((.......))).))))))))))	chr3:48470698-48470950(-)$1	1	133	168	12.4447
((((...(.(((((((.....))))))).)...))	chr11:867840-868108(-)$1	1	100	135	12.7217
.((((.((((((((((.....)))))))))).)))	chr2:242707475-242707723(+)$1	1	139	174	13.3623
(((.(((..(((.(((......))).))).)))))	chr4:124319278-124319537(+)$1	1	87	122	13.8622
((((((.(((((((((.....))))))))).))))	chr1:200708675-200708945(+)$1	1	145	180	15.3435
(((((((..((.(((......))).))...)))))	chr10:103603174-103603437(-)$1	1	209	244	16.4773
((.(((.(.((((..(((...)))..)))))))))	chr12:122238354-122238571(-)$1	1	106	141	11.8354
(((((..(((((......)).)))..)))))))))	chr1:156219715-156219936(-)$1	1	154	189	12.0438
(((((((..(..((((.....))))..).))))))	chr19:1104352-1104652(+)$1	1	204	239	15.0680
.(((.((.((.(.(((.....))).).)).)))))	chr10:88516558-88516889(+)$1	1	83	118	12.8461
((.(((((.(((((((......))))))).)))))	chr3:142443246-142443502(+)$1	1	90	125	12.6776
.))))))((((((((((......).))))))))))	chr19:1258090-1258362(+)$1	1	189	224	12.8646

#PSSM
g : 0.22	i : 0.13	= : 0.10	d : 0.08	: : 0.08	c : 0.08	e : 0.05	b : 0.03	h : 0.03	" : 0.03	[ : 0.03	F : 0.03	! : 0.01	# : 0.01	f : 0.01	] : 0.01	
g : 0.23	i : 0.16	= : 0.15	c : 0.10	d : 0.08	" : 0.05	e : 0.05	h : 0.03	f : 0.03	b : 0.01	# : 0.01	[ : 0.01	F : 0.01	a : 0.01	
g : 0.20	i : 0.18	= : 0.15	d : 0.10	[ : 0.10	" : 0.06	b : 0.05	e : 0.03	c : 0.03	f : 0.03	h : 0.01	F : 0.01	
g : 0.20	i : 0.18	= : 0.16	d : 0.08	c : 0.08	" : 0.05	b : 0.03	h : 0.03	[ : 0.03	a : 0.03	e : 0.03	f : 0.03	$ : 0.01	
i : 0.22	g : 0.20	= : 0.16	[ : 0.11	c : 0.08	d : 0.05	" : 0.05	h : 0.03	e : 0.03	$ : 0.01	f : 0.01	
g : 0.22	i : 0.20	= : 0.15	c : 0.10	f : 0.05	d : 0.05	[ : 0.05	h : 0.03	" : 0.03	b : 0.03	a : 0.01	$ : 0.01	! : 0.01	e : 0.01	
i : 0.20	= : 0.16	[ : 0.13	g : 0.11	c : 0.08	f : 0.06	! : 0.05	b : 0.05	d : 0.03	" : 0.03	$ : 0.01	h : 0.01	e : 0.01	
i : 0.18	= : 0.15	! : 0.10	g : 0.10	e : 0.06	c : 0.06	a : 0.06	f : 0.05	b : 0.05	d : 0.05	[ : 0.05	$ : 0.01	" : 0.01	h : 0.01	
i : 0.16	= : 0.15	[ : 0.15	b : 0.08	c : 0.08	! : 0.06	g : 0.06	f : 0.05	e : 0.05	d : 0.03	" : 0.03	a : 0.01	h : 0.01	# : 0.01	
= : 0.15	i : 0.13	g : 0.13	c : 0.11	" : 0.08	b : 0.08	[ : 0.08	f : 0.05	e : 0.05	d : 0.03	! : 0.01	h : 0.01	# : 0.01	a : 0.01	
c : 0.15	g : 0.11	= : 0.11	b : 0.10	i : 0.10	! : 0.10	" : 0.08	e : 0.06	f : 0.05	d : 0.03	[ : 0.03	h : 0.01	# : 0.01	
! : 0.18	c : 0.13	g : 0.11	[ : 0.08	i : 0.08	" : 0.06	b : 0.06	e : 0.06	= : 0.06	a : 0.03	# : 0.03	f : 0.03	d : 0.01	
c : 0.22	[ : 0.16	! : 0.13	d : 0.10	i : 0.08	g : 0.08	= : 0.05	# : 0.03	e : 0.03	a : 0.03	" : 0.01	f : 0.01	o : 0.01	
c : 0.38	d : 0.11	[ : 0.10	g : 0.08	! : 0.05	= : 0.05	i : 0.05	# : 0.03	e : 0.03	a : 0.03	b : 0.01	f : 0.01	o : 0.01	
c : 0.44	d : 0.11	g : 0.08	b : 0.06	! : 0.05	i : 0.05	# : 0.03	e : 0.03	= : 0.03	q : 0.01	a : 0.01	f : 0.01	p : 0.01	o : 0.01	
c : 0.30	o : 0.22	d : 0.11	g : 0.08	b : 0.05	i : 0.05	! : 0.03	= : 0.03	# : 0.01	q : 0.01	a : 0.01	e : 0.01	f : 0.01	p : 0.01	
o : 0.35	n : 0.28	c : 0.08	m : 0.08	a : 0.05	d : 0.03	b : 0.01	q : 0.01	= : 0.01	e : 0.01	f : 0.01	p : 0.01	
o : 0.40	n : 0.28	m : 0.22	b : 0.01	q : 0.01	l : 0.01	p : 0.01	c : 0.01	
o : 0.38	n : 0.28	m : 0.22	l : 0.05	q : 0.01	p : 0.01	b : 0.01	
o : 0.38	n : 0.28	m : 0.22	l : 0.05	q : 0.01	p : 0.01	b : 0.01	
o : 0.38	n : 0.28	m : 0.13	d : 0.06	l : 0.03	q : 0.01	c : 0.01	a : 0.01	p : 0.01	] : 0.01	
c : 0.42	o : 0.18	d : 0.11	g : 0.06	b : 0.05	e : 0.03	= : 0.03	q : 0.01	3 : 0.01	a : 0.01	f : 0.01	i : 0.01	
c : 0.49	d : 0.11	b : 0.08	g : 0.08	= : 0.05	o : 0.05	e : 0.03	i : 0.03	3 : 0.01	] : 0.01	f : 0.01	
c : 0.49	d : 0.11	g : 0.08	a : 0.06	3 : 0.05	= : 0.05	b : 0.03	e : 0.03	i : 0.03	] : 0.01	f : 0.01	
2 : 0.25	] : 0.25	c : 0.08	g : 0.08	d : 0.06	3 : 0.06	= : 0.06	e : 0.03	i : 0.03	a : 0.01	h : 0.01	f : 0.01	
2 : 0.28	= : 0.11	c : 0.10	g : 0.10	3 : 0.08	] : 0.06	i : 0.06	e : 0.05	a : 0.03	f : 0.03	h : 0.01	d : 0.01	b : 0.01	
g : 0.15	= : 0.15	b : 0.11	i : 0.11	c : 0.11	3 : 0.05	f : 0.05	e : 0.05	2 : 0.05	] : 0.03	a : 0.03	d : 0.03	4 : 0.01	h : 0.01	
g : 0.16	= : 0.15	c : 0.15	i : 0.13	b : 0.11	3 : 0.05	d : 0.05	e : 0.05	f : 0.03	4 : 0.01	2 : 0.01	h : 0.01	] : 0.01	a : 0.01	
] : 0.16	i : 0.16	= : 0.15	g : 0.10	2 : 0.06	c : 0.06	f : 0.05	e : 0.05	4 : 0.03	d : 0.03	b : 0.03	3 : 0.03	a : 0.01	h : 0.01	
i : 0.22	= : 0.15	g : 0.10	] : 0.08	2 : 0.06	f : 0.05	e : 0.05	c : 0.05	a : 0.05	4 : 0.03	b : 0.03	d : 0.03	h : 0.03	3 : 0.03	
i : 0.25	= : 0.16	g : 0.11	f : 0.06	b : 0.06	e : 0.06	c : 0.05	a : 0.03	d : 0.03	h : 0.03	] : 0.03	2 : 0.03	4 : 0.01	3 : 0.01	
i : 0.23	g : 0.16	= : 0.15	] : 0.08	c : 0.06	f : 0.05	2 : 0.05	b : 0.05	e : 0.03	h : 0.03	d : 0.03	4 : 0.01	3 : 0.01	
i : 0.23	g : 0.22	= : 0.15	c : 0.10	d : 0.06	] : 0.05	e : 0.03	f : 0.03	b : 0.01	4 : 0.01	2 : 0.01	h : 0.01	a : 0.01	3 : 0.01	
i : 0.23	g : 0.16	= : 0.15	d : 0.11	c : 0.10	] : 0.06	e : 0.05	4 : 0.03	f : 0.03	b : 0.01	h : 0.01	
i : 0.20	g : 0.18	= : 0.13	c : 0.11	d : 0.11	] : 0.05	e : 0.05	4 : 0.03	h : 0.03	5 : 0.01	a : 0.01	f : 0.01	E : 0.01	

#score	809.0883793857547
#seq	59
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_transcript_m3_run1.txt

#BEAR
%eeeeepppppppeeee	chr7:77256641-77256918(+)$1	277	210	227	15.2953
ggggggpppppppgggg	chr1:19504079-19504336(-)$1	257	49	66	13.8501
##ddddpppppppdddd	chr3:33759501-33759777(-)$1	276	125	142	14.3927
##ddddpppppppdddd	chr10:52103207-52103448(-)$1	241	122	139	14.3927
[eeeeepppppppeeee	chr19:2807698-2807960(+)$1	262	49	66	15.7581
:eeeeepppppppeeee	chr11:62655915-62656191(+)$1	276	171	188	14.9721
:eeeeepppppppeeee	chr10:43883147-43883411(-)$1	264	200	217	14.9721
[eeeeepppppppeeee	chr10:50368867-50369122(-)$1	255	26	43	15.7581
ggggggpppppppgggg	chr16:70296097-70296317(-)$1	220	163	180	13.8501
"eeeeepppppppeeee	chr5:14693074-14693389(+)$1	315	238	255	15.8027
ffddddpppppppdddd	chr5:137089444-137089715(-)$1	271	30	47	13.8782
###cccpppppppcccc	chr19:54377316-54377593(+)$1	277	101	118	13.3576
""ddddpppppppdddd	chrX:70757739-70758008(+)$1	269	48	65	14.4162
c[ddddpppppppdddd	chr5:150409849-150410109(-)$1	260	133	150	14.2541
e[ddddpppppppdddd	chr2:32626325-32626573(+)$1	248	93	110	14.1146
i[ddddpppppppdddd	chr16:70406083-70406333(+)$1	250	12	29	14.2819
ggggggpppppppgggg	chr19:41779825-41780058(+)$1	233	44	61	13.8501
ggggggpppppppgggg	chr21:34131707-34131972(-)$1	265	120	137	13.8501
geeeeepppppppeeee	chr16:18849396-18849662(-)$1	266	128	145	15.5819
[eeeeepppppppeeee	chr1:150522335-150522553(+)$1	218	36	53	15.7581
!eeeeepppppppeeee	chr17:44248356-44248622(-)$1	266	156	173	15.8084
:eeeeepppppppeeee	chr16:30594167-30594411(-)$1	244	121	138	14.9721
:eeeeepppppppeeee	chr9:127624098-127624331(-)$1	233	29	46	14.9721
[eeeeepppppppeeee	chr22:21213281-21213512(+)$1	231	121	138	15.7581
:eeeeepppppppeeee	chr9:117267158-117267441(-)$1	283	94	111	14.9721
[eeeeepppppppeeee	chr5:641412-641659(+)$1	247	177	194	15.7581
:eeeeepppppppeeee	chrX:70764457-70764684(+)$1	227	125	142	14.9721
[eeeeepppppppeeee	chr1:16199459-16199733(+)$1	274	103	120	15.7581
c[ddddpppppppdddd	chr7:148581254-148581478(-)$1	224	186	203	14.2541
ggggggpppppppgggg	chr12:54686226-54686460(-)$1	234	13	30	13.8501
'eeeeepppppppeeee	chr16:2871476-2871722(+)$1	246	59	76	15.2574
eeee[apppppppa]ee	chr17:18167703-18167961(+)$1	258	154	171	14.3609
g[ddddpppppppdddd	chr2:170428450-170428708(-)$1	258	211	228	14.2937
gg!!bbpppppppbb]g	chr10:12070935-12071197(-)$1	262	34	51	12.6774
:eeeeepppppppeeee	chr12:110841331-110841579(-)$1	248	1	18	14.9721
ddd[bbpppppppbb]d	chr1:12071696-12071950(+)$1	254	36	53	12.4585
gggggapppppppa]gg	chr16:89629414-89629649(+)$1	235	197	214	13.6341
ceeeeepppppppeeee	chr16:47548336-47548590(+)$1	254	146	163	15.5423
:eeeeepppppppeeee	chr19:21366586-21366818(+)$1	232	96	113	14.9721
ddd!!apppppppa22d	chr2:27601353-27601594(-)$1	241	92	109	12.7924
feeeeepppppppeeee	chr1:241798751-241799029(-)$1	278	133	150	15.3910
ggggggpppppppgggg	chr9:139734808-139735066(+)$1	258	106	123	13.8501
ccc[bbpppppppbbcc	chr11:65546955-65547212(-)$1	257	229	246	12.3216
b:ddddpppppppdddd	chr14:77978526-77978826(-)$1	300	218	235	12.9687
""ddddpppppppdddd	chrX:153284000-153284285(-)$1	285	260	277	14.4162
++ddddpppppppdddd	chr3:155632118-155632398(+)$1	280	135	152	13.1180
ggggggpppppppgggg	chr16:11348946-11349197(-)$1	251	197	214	13.8501
ggggggpppppppgggg	chr10:3827178-3827398(-)$1	220	12	29	13.8501
#eeeeepppppppeeee	chr9:94988688-94988952(-)$1	264	125	142	15.8065
ggggggpppppppgggg	chr7:123388534-123388779(-)$1	245	135	152	13.8501
#eeeeepppppppeeee	chr3:13371980-13372244(-)$1	264	16	33	15.8065
ddd[bbpppppppbbdd	chr19:14627631-14627873(-)$1	242	97	114	12.5731
g!!cccpppppppcccg	chr6:28349945-28350240(-)$1	295	84	101	13.5423
:eeeeepppppppeeee	chr1:204380133-204380346(-)$1	213	102	119	14.9721
eeeebbpppppppbb]e	chr6:30691132-30691379(+)$1	247	50	67	13.3103
"""cccpppppppccc3	chr10:52103589-52103850(-)$1	261	153	170	13.3172
:eeeeepppppppeeee	chr16:30536007-30536249(-)$1	242	160	177	14.9721

#otherMatches

#Seq PSSM
AGAAUAAAACUAAUAUU	chr7:77256641-77256918(+)$1	277	210	227	15.2953
GGGGAAUGCUCUUUUUC	chr1:19504079-19504336(-)$1	257	49	66	13.8501
UUGGCGUUCCUCCCGCC	chr3:33759501-33759777(-)$1	276	125	142	14.3927
CUUUUCUAUUUGUGAAA	chr10:52103207-52103448(-)$1	241	122	139	14.3927
GCGAGGGACGCGGCCUC	chr19:2807698-2807960(+)$1	262	49	66	15.7581
GGGCUCCCCUCUUGAGC	chr11:62655915-62656191(+)$1	276	171	188	14.9721
CAGGUGUCCAUUUCAUC	chr10:43883147-43883411(-)$1	264	200	217	14.9721
UUGAGAAUCAUCAUUUC	chr10:50368867-50369122(-)$1	255	26	43	15.7581
ACCUGACACACCUUUGG	chr16:70296097-70296317(-)$1	220	163	180	13.8501
UUUGAUAAGAGAAAUUA	chr5:14693074-14693389(+)$1	315	238	255	15.8027
GCGGCCACUUUGAGGCC	chr5:137089444-137089715(-)$1	271	30	47	13.8782
UCUGCUUCAUCCUAGCG	chr19:54377316-54377593(+)$1	277	101	118	13.3576
GAGCAUUAUCGACAUGC	chrX:70757739-70758008(+)$1	269	48	65	14.4162
CCAGGAGCAGCAAUCCU	chr5:150409849-150410109(-)$1	260	133	150	14.2541
AGAUCUGCAUAUGGGAU	chr2:32626325-32626573(+)$1	248	93	110	14.1146
AUUGGGUCCUUUCCCCA	chr16:70406083-70406333(+)$1	250	12	29	14.2819
CCCUGUUUCUAAUACAG	chr19:41779825-41780058(+)$1	233	44	61	13.8501
AGUUUGUACCUCUUGGA	chr21:34131707-34131972(-)$1	265	120	137	13.8501
UGGCAGAGAGACCCUGC	chr16:18849396-18849662(-)$1	266	128	145	15.5819
GUGGGUGCCCUUGAUCC	chr1:150522335-150522553(+)$1	218	36	53	15.7581
AAAGGCUGAAGCUGCCU	chr17:44248356-44248622(-)$1	266	156	173	15.8084
UGCUGGCCAUCCACCAG	chr16:30594167-30594411(-)$1	244	121	138	14.9721
UGCGGCGCCAUUGGCCG	chr9:127624098-127624331(-)$1	233	29	46	14.9721
CAGCUUACCCUAAAAGC	chr22:21213281-21213512(+)$1	231	121	138	15.7581
CUCUUGUGUCUCUCAGG	chr9:117267158-117267441(-)$1	283	94	111	14.9721
AUGGGAACCAACAUCUC	chr5:641412-641659(+)$1	247	177	194	15.7581
GUCCUUUGAAACUGAGG	chrX:70764457-70764684(+)$1	227	125	142	14.9721
AGGGCCUGCUUAUGGUC	chr1:16199459-16199733(+)$1	274	103	120	15.7581
cgCGCGGGAACAACGCG	chr7:148581254-148581478(-)$1	224	186	203	14.2541
UGGCAGCCCAGAACUGC	chr12:54686226-54686460(-)$1	234	13	30	13.8501
AGCCAGACCCCUCCUGG	chr16:2871476-2871722(+)$1	246	59	76	15.2574
UCCUGCGUCUGGGGGAG	chr17:18167703-18167961(+)$1	258	154	171	14.3609
AUGCUUCGUCUAAGAGC	chr2:170428450-170428708(-)$1	258	211	228	14.2937
GGUCUGGAAAAAACAUU	chr10:12070935-12071197(-)$1	262	34	51	12.6774
CAGUAGUUACCUCUUGC	chr12:110841331-110841579(-)$1	248	1	18	14.9721
AGAAUGAAGCACCCAGU	chr1:12071696-12071950(+)$1	254	36	53	12.4585
CUUUACUUUCUGUGUUG	chr16:89629414-89629649(+)$1	235	197	214	13.6341
cgaccuugagaauaggu	chr16:47548336-47548590(+)$1	254	146	163	15.5423
CUCUUACUAAACAUAGG	chr19:21366586-21366818(+)$1	232	96	113	14.9721
UGCCCCUUUGCCUGCAG	chr2:27601353-27601594(-)$1	241	92	109	12.7924
GGUUGAAGGAGUAUCAG	chr1:241798751-241799029(-)$1	278	133	150	15.3910
CUggggggcggggcccc	chr9:139734808-139735066(+)$1	258	106	123	13.8501
GCUUGCGCUCAAGGCGG	chr11:65546955-65547212(-)$1	257	229	246	12.3216
CAGAGGAACUCUCCCUC	chr14:77978526-77978826(-)$1	300	218	235	12.9687
CCCUGGAAGGCCAUCAG	chrX:153284000-153284285(-)$1	285	260	277	14.4162
AAUAUCAGAUGAAGAUA	chr3:155632118-155632398(+)$1	280	135	152	13.1180
UUUCGCCCUUAGCGUGA	chr16:11348946-11349197(-)$1	251	197	214	13.8501
UUUGCAAAUAUUGUGUG	chr10:3827178-3827398(-)$1	220	12	29	13.8501
uuaugggacuuuacuau	chr9:94988688-94988952(-)$1	264	125	142	15.8065
CCGUGACAUUACCUCAC	chr7:123388534-123388779(-)$1	245	135	152	13.8501
GAGGAGCCACAGACUCU	chr3:13371980-13372244(-)$1	264	16	33	15.8065
UCAUGCCAUGUUUGCUG	chr19:14627631-14627873(-)$1	242	97	114	12.5731
UACCUGGACUUUACAGA	chr6:28349945-28350240(-)$1	295	84	101	13.5423
UUGCUGGAGUCUACAGC	chr1:204380133-204380346(-)$1	213	102	119	14.9721
CUGUCCUGGAUGUGGUA	chr6:30691132-30691379(+)$1	247	50	67	13.3103
CUCCUGGACAUGAUAGA	chr10:52103589-52103850(-)$1	261	153	170	13.3172
AGCUGCCCCGACUGCGG	chr16:30536007-30536249(-)$1	242	160	177	14.9721

#DB
.(((((.......))))	chr7:77256641-77256918(+)$1	1	210	227	15.2953
((((((.......))))	chr1:19504079-19504336(-)$1	1	49	66	13.8501
..((((.......))))	chr3:33759501-33759777(-)$1	1	125	142	14.3927
..((((.......))))	chr10:52103207-52103448(-)$1	1	122	139	14.3927
.(((((.......))))	chr19:2807698-2807960(+)$1	1	49	66	15.7581
.(((((.......))))	chr11:62655915-62656191(+)$1	1	171	188	14.9721
.(((((.......))))	chr10:43883147-43883411(-)$1	1	200	217	14.9721
.(((((.......))))	chr10:50368867-50369122(-)$1	1	26	43	15.7581
((((((.......))))	chr16:70296097-70296317(-)$1	1	163	180	13.8501
.(((((.......))))	chr5:14693074-14693389(+)$1	1	238	255	15.8027
))((((.......))))	chr5:137089444-137089715(-)$1	1	30	47	13.8782
...(((.......))))	chr19:54377316-54377593(+)$1	1	101	118	13.3576
..((((.......))))	chrX:70757739-70758008(+)$1	1	48	65	14.4162
(.((((.......))))	chr5:150409849-150410109(-)$1	1	133	150	14.2541
(.((((.......))))	chr2:32626325-32626573(+)$1	1	93	110	14.1146
(.((((.......))))	chr16:70406083-70406333(+)$1	1	12	29	14.2819
((((((.......))))	chr19:41779825-41780058(+)$1	1	44	61	13.8501
((((((.......))))	chr21:34131707-34131972(-)$1	1	120	137	13.8501
((((((.......))))	chr16:18849396-18849662(-)$1	1	128	145	15.5819
.(((((.......))))	chr1:150522335-150522553(+)$1	1	36	53	15.7581
.(((((.......))))	chr17:44248356-44248622(-)$1	1	156	173	15.8084
.(((((.......))))	chr16:30594167-30594411(-)$1	1	121	138	14.9721
.(((((.......))))	chr9:127624098-127624331(-)$1	1	29	46	14.9721
.(((((.......))))	chr22:21213281-21213512(+)$1	1	121	138	15.7581
.(((((.......))))	chr9:117267158-117267441(-)$1	1	94	111	14.9721
.(((((.......))))	chr5:641412-641659(+)$1	1	177	194	15.7581
.(((((.......))))	chrX:70764457-70764684(+)$1	1	125	142	14.9721
.(((((.......))))	chr1:16199459-16199733(+)$1	1	103	120	15.7581
(.((((.......))))	chr7:148581254-148581478(-)$1	1	186	203	14.2541
((((((.......))))	chr12:54686226-54686460(-)$1	1	13	30	13.8501
.(((((.......))))	chr16:2871476-2871722(+)$1	1	59	76	15.2574
((((.(.......).))	chr17:18167703-18167961(+)$1	1	154	171	14.3609
(.((((.......))))	chr2:170428450-170428708(-)$1	1	211	228	14.2937
((..((.......)).)	chr10:12070935-12071197(-)$1	1	34	51	12.6774
.(((((.......))))	chr12:110841331-110841579(-)$1	1	1	18	14.9721
(((.((.......)).)	chr1:12071696-12071950(+)$1	1	36	53	12.4585
((((((.......).))	chr16:89629414-89629649(+)$1	1	197	214	13.6341
)(((((.......))))	chr16:47548336-47548590(+)$1	1	146	163	15.5423
.(((((.......))))	chr19:21366586-21366818(+)$1	1	96	113	14.9721
(((..(.......)..)	chr2:27601353-27601594(-)$1	1	92	109	12.7924
)(((((.......))))	chr1:241798751-241799029(-)$1	1	133	150	15.3910
((((((.......))))	chr9:139734808-139735066(+)$1	1	106	123	13.8501
(((.((.......))))	chr11:65546955-65547212(-)$1	1	229	246	12.3216
).((((.......))))	chr14:77978526-77978826(-)$1	1	218	235	12.9687
..((((.......))))	chrX:153284000-153284285(-)$1	1	260	277	14.4162
..((((.......))))	chr3:155632118-155632398(+)$1	1	135	152	13.1180
((((((.......))))	chr16:11348946-11349197(-)$1	1	197	214	13.8501
((((((.......))))	chr10:3827178-3827398(-)$1	1	12	29	13.8501
.(((((.......))))	chr9:94988688-94988952(-)$1	1	125	142	15.8065
((((((.......))))	chr7:123388534-123388779(-)$1	1	135	152	13.8501
.(((((.......))))	chr3:13371980-13372244(-)$1	1	16	33	15.8065
(((.((.......))))	chr19:14627631-14627873(-)$1	1	97	114	12.5731
(..(((.......))))	chr6:28349945-28350240(-)$1	1	84	101	13.5423
.(((((.......))))	chr1:204380133-204380346(-)$1	1	102	119	14.9721
((((((.......)).)	chr6:30691132-30691379(+)$1	1	50	67	13.3103
...(((.......))).	chr10:52103589-52103850(-)$1	1	153	170	13.3172
.(((((.......))))	chr16:30536007-30536249(-)$1	1	160	177	14.9721

#PSSM
g : 0.24	: : 0.17	[ : 0.10	# : 0.08	" : 0.07	c : 0.07	e : 0.05	d : 0.05	f : 0.03	% : 0.01	i : 0.01	! : 0.01	' : 0.01	b : 0.01	+ : 0.01	
e : 0.47	g : 0.19	[ : 0.08	# : 0.05	" : 0.05	d : 0.05	f : 0.01	c : 0.01	: : 0.01	+ : 0.01	! : 0.01	
e : 0.47	d : 0.26	g : 0.17	! : 0.03	# : 0.01	c : 0.01	" : 0.01	
e : 0.47	d : 0.21	g : 0.17	c : 0.05	[ : 0.05	! : 0.03	
e : 0.43	d : 0.21	g : 0.17	b : 0.08	c : 0.05	[ : 0.01	! : 0.01	
e : 0.43	d : 0.21	g : 0.15	b : 0.08	c : 0.05	a : 0.05	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
e : 0.43	d : 0.21	g : 0.15	b : 0.08	c : 0.05	a : 0.05	
e : 0.43	d : 0.21	g : 0.15	b : 0.08	c : 0.05	] : 0.03	2 : 0.01	
e : 0.45	d : 0.22	g : 0.17	c : 0.07	] : 0.05	2 : 0.01	
e : 0.47	d : 0.26	g : 0.21	c : 0.03	3 : 0.01	

#score	822.3422681487777
#seq	57
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_transcript_m2_run1.txt

#BEAR
ggggggg[cccddddmmmmdddd22cccgggg	chr15:34656357-34656609(-)$1	252	213	245	15.0629
:bb"""eeeeeddddmmmmdddd333eeeee3	chr15:93521375-93521631(+)$1	256	146	178	13.6447
i####dddd!!ddddmmmmdddd22ddddiii	chr12:48184973-48185191(-)$1	218	102	134	14.7688
ggggggg"""eeeeeooooooeeeee]ggggg	chr4:68543284-68543540(-)$1	256	212	244	10.3754
cffffff####eeeeellleeeee4444ffff	chr9:131790324-131790632(-)$1	308	193	225	11.0700
hhhh[dddd!!ddddmmmmdddd22ddddhhh	chr19:5657191-5657458(+)$1	267	199	231	13.9624
!eeeee!!a!!ddddmmmmdddd]a22eeeee	chr21:47678881-47679107(-)$1	226	80	112	15.7451
[a!!dddd"""ddddmmmmdddddddd]aeee	chr9:114135494-114135720(-)$1	226	72	104	14.7317
fffff!!bb[a[ddddllldddd]a]bb333f	chr17:80213206-80213520(-)$1	314	10	42	12.4521
!ccc[bb[bb[ddddmmmmddddbb]bb]ccc	chr12:116434182-116434439(-)$1	257	22	54	13.1748
g!!a$$$$$bbddddmmmmdddd4444bb444	chr12:124915153-124915425(-)$1	272	157	189	13.7124
!!ccc[ccc[ddddnnnnndddd]cccccc22	chr3:172013112-172013385(+)$1	273	177	209	11.7454
===eeeee"""eeeeellleeeeeeeeee]==	chr7:1477841-1478045(-)$1	204	135	167	11.1614
:::cccccc!!ddddmmmmdddd22ccc]ccc	chrX:70782597-70782830(+)$1	233	188	220	12.4957
!eeeeebb"""ddddmmmmddddbb]eeeee2	chr17:40270970-40271196(-)$1	226	119	151	14.6619
ccffffff"""ddddmmmmdddd22ffffff2	chr9:139360321-139360587(-)$1	266	109	141	15.0135
fff[ccc!!a[ddddmmmmdddd]a666666c	chrX:153595035-153595271(-)$1	236	119	151	13.0975
:ccc[eeeee[ddddllldddd333eeeee22	chrX:48652242-48652497(+)$1	255	34	66	12.7912
hhhhhhh####ddddnnnnndddd333hhhhh	chr19:46275808-46276102(-)$1	294	258	290	12.3715
===============mmmm=============	chr10:93719440-93719665(+)$1	225	44	76	11.5764
ee[ggggggg[acccmmmmccc]a]ggggggg	chrX:153176153-153176390(-)$1	237	39	71	11.6842
[eeeeedddd[ddddmmmmdddd333dddd]e	chr21:47642444-47642698(-)$1	254	178	210	14.9263
a[eeeee####ddddlllddddeeeee]a===	chr22:42271446-42271691(+)$1	245	64	96	14.0837
ffff"""eeeeeddddllldddd]eeeee]ff	chr1:22073458-22073704(-)$1	246	118	150	11.6099
a"""ccc[a"""cccmmmmccc22a]ccc]ah	chr5:179921450-179921730(+)$1	280	220	252	12.4593
:ffffff!!a[ddddmmmmdddda22ffffff	chr19:19119025-19119336(-)$1	311	206	238	13.7843
fffeeeee[a[ddddmmmmdddd]aeeeee:D	chr17:46052270-46052514(+)$1	244	136	168	12.6679
gg[ggggggg!!cccmmmmccc22ggggggg3	chr9:131718528-131718753(+)$1	225	62	94	12.1523
ccc"""ccc!!ddddllldddd]ccc]ccc]b	chr14:104120869-104121124(+)$1	255	27	59	13.5157
d[eeeee####ddddmmmmdddd333eeeeed	chr11:34098006-34098262(+)$1	256	101	133	16.5140
idddd[bb[a!!ddddllldddd333a]bb]d	chr9:111641624-111641852(-)$1	228	121	153	13.3126
eeee[a!!bb[ddddmmmmddddbb22aeeee	chr17:48818406-48818671(+)$1	265	114	146	13.7710
gggg!!dddd[ddddnnnnndddddddd333g	chr12:57905455-57905700(+)$1	245	8	40	11.6986
cchhhhhhhh[ddddmmmmdddd333hhhhhh	chr2:71626596-71626835(+)$1	239	165	197	13.6402
bb[eeeee[a[ddddlllddddaeeeeebbcc	chr1:156220016-156220246(-)$1	230	88	120	12.1663
cbb[ffffff[ddddmmmmdddd]ffffff]b	chr16:89809208-89809445(-)$1	237	47	79	12.8501
a[ggggggg!!eeeeellleeeee22gggggg	chr16:74976545-74976783(-)$1	238	175	207	11.4618
eee"""eeeeeddddmmmmdddd]eeeee444	chr11:291962-292183(+)$1	221	147	179	13.4723
&cccdddd"""ddddllldddd333dddd888	chr1:150526198-150526491(+)$1	293	58	90	12.3603
ggggggccc!!ddddllldddd]ccc>>>>>>	chr1:11147418-11147666(-)$1	248	89	121	12.8619
eeeee[bb"""ddddmmmmdddd333bbeeee	chr3:194181418-194181659(-)$1	241	149	181	15.8500
:eeeee[bb!!ddddmmmmdddd333bb]eee	chr7:151899957-151900190(-)$1	233	134	166	14.5473
ccccc[ccc"""ccclllccc333ccc]ccc]	chr8:145625771-145625985(-)$1	214	133	165	11.2681
hhhhhhhhbb[ddddmmmmdddd]bb22hhhh	chr7:155437295-155437530(+)$1	235	51	83	12.1095
ggggggg####ddddnnnnndddd4444gggg	chr21:34136556-34136806(-)$1	250	78	110	14.3153
========"""ddddnnnnndddd333=====	chr1:215740775-215741048(+)$1	273	2	34	14.8419
ggggg[ccc!!ddddmmmmddddccc]ggggg	chr19:50165224-50165469(-)$1	245	117	149	15.6749
bb[eeeeebb[ddddllldddd]bb333eeee	chr17:80045767-80045984(-)$1	217	24	56	12.4436
g"""dddd"""ddddmmmmdddddddd333gg	chr20:49225725-49225969(-)$1	244	150	182	14.9290
cc[bb"""ccc[cccmmmmcccccc4444bb]	chr16:22319366-22319647(+)$1	281	170	202	10.2320
========"""ddddmmmmdddd=========	chr12:9577979-9578302(-)$1	323	27	59	16.6547
ggggccc####ddddmmmmdddd4444ccc22	chr21:44479320-44479546(-)$1	226	171	203	16.7688
gggggg[eeeeecccmmmmccc333eeeee]g	chr9:134003637-134003928(+)$1	291	199	231	11.9099

#otherMatches

#Seq PSSM
AGGUGGGUAAGGGUCUCAAGACCAUCUUCUCA	chr15:34656357-34656609(-)$1	252	213	245	15.0629
CGGACACAGUCGUCAUCUUUGACUCUGACUGG	chr15:93521375-93521631(+)$1	256	146	178	13.6447
CUCCUGGCACAGCGGAUGUUUGUGAUGCUGCC	chr12:48184973-48185191(-)$1	218	102	134	14.7688
GUUAGUACUCCAUUUUGUAUUAAAUGUUAUUG	chr4:68543284-68543540(-)$1	256	212	244	10.3754
CACGCCAUGGACUUCAACAUGAAGAAGCUGGC	chr9:131790324-131790632(-)$1	308	193	225	11.0700
UUCCUAGAAUGUGGUCAUGACUGUCUUCUGGA	chr19:5657191-5657458(+)$1	267	199	231	13.9624
AUGCUGAUUGCCCUGUUUCUAGGAAUGCAGUA	chr21:47678881-47679107(-)$1	226	80	112	15.7451
CGGAACAGUGUGAUUCAGAAAUCUUGUGCAUU	chr9:114135494-114135720(-)$1	226	72	104	14.7317
AGUGUGGAGCUGAGGCAGGGCCUGGACUGAAA	chr17:80213206-80213520(-)$1	314	10	42	12.4521
AAGAUGUUGCCGAGCCAUUGUUUGCUACCUCU	chr12:116434182-116434439(-)$1	257	22	54	13.1748
CGAGAACAACCCCCGGCGGCGGGCCAAGGAGA	chr12:124915153-124915425(-)$1	272	157	189	13.7124
CAAGAUAAUUUACAGGUUGUGUAUGUUUCUAU	chr3:172013112-172013385(+)$1	273	177	209	11.7454
GGAGCCGGGCAGGGGCCCAGCCCUCCGGCAUC	chr7:1477841-1478045(-)$1	204	135	167	11.1614
UGAGCAGUAUUCCGAGAAAUUGGCUUAUAUGC	chrX:70782597-70782830(+)$1	233	188	220	12.4957
uggcagguacauagcccaagcuaacgcugccc	chr17:40270970-40271196(-)$1	226	119	151	14.6619
CAGUGGCCCCGGCUUCCCAGAGUAUGGCUACC	chr9:139360321-139360587(-)$1	266	109	141	15.0135
GCCAGGGAGAGGUGCUGGUGUACGUGGAGGAC	chrX:153595035-153595271(-)$1	236	119	151	13.0975
ACGGGGCUCCAGUCUGGGAGGCACAGGAGCAG	chrX:48652242-48652497(+)$1	255	34	66	12.7912
AGGGCUUCCCGGGUGGCGUGCACUGUAGAGCC	chr19:46275808-46276102(-)$1	294	258	290	12.3715
guguguguguguguauauauauauauauauau	chr10:93719440-93719665(+)$1	225	44	76	11.5764
GGUGGGGGCUCGGGCAGAUGUCACCAGCUUCC	chrX:153176153-153176390(-)$1	237	39	71	11.6842
ACUGCACAUGUGCAUGUGUGUGUUCUCAUGAU	chr21:47642444-47642698(-)$1	254	178	210	14.9263
GCAGAUCAUUUUCACCAGGUGGGGUUUUCUUU	chr22:42271446-42271691(+)$1	245	64	96	14.0837
AUAUGGAGCCUUAUGUGGAACAUAAAGGUAAU	chr1:22073458-22073704(-)$1	246	118	150	11.6099
GGGACUGGUAUGGUGGUUCCACAGGGCAGACC	chr5:179921450-179921730(+)$1	280	220	252	12.4593
CUGUGGUACGUACCCCCCCGGGUCUCAUCACA	chr19:19119025-19119336(-)$1	311	206	238	13.7843
aguggggcugggaAGCUGACUUCGUGCUCUUC	chr17:46052270-46052514(+)$1	244	136	168	12.6679
AUUGAGAAUGAAGAAAUGAUUCACUGUUCUUU	chr9:131718528-131718753(+)$1	225	62	94	12.1523
CCAGAAUGUAUGACAACAUGUCCACAAUGGUG	chr14:104120869-104121124(+)$1	255	27	59	13.5157
UUGAAUGAACAGUAUGAACAUGCCUCCAUUCA	chr11:34098006-34098262(+)$1	256	101	133	16.5140
AUCAGCGUACGUAUCACAUUGAUUCAGCACAU	chr9:111641624-111641852(-)$1	228	121	153	13.3126
UUACAGAGCUUACUUGCAGAAGUAGAACGUAG	chr17:48818406-48818671(+)$1	265	114	146	13.7710
UUUCUCCGUUAUCUCAGCUGGAGAAGCGACUG	chr12:57905455-57905700(+)$1	245	8	40	11.6986
UGUGACUAUACCAGGUAAGCUUGAAAUGUGGU	chr2:71626596-71626835(+)$1	239	165	197	13.6402
GGAUUAGGAGAGUCUUGUGGGCCCCUGGCCAG	chr1:156220016-156220246(-)$1	230	88	120	12.1663
CGUGGUUGUAUGGUUGUAAGGCCCUGCAAUGA	chr16:89809208-89809445(-)$1	237	47	79	12.8501
UGGUCUUUGAUCCCUCCCAGAGGGUGUGAAGA	chr16:74976545-74976783(-)$1	238	175	207	11.4618
GGCACUGGCCCGUAGGGCCCUGCAGGGCCUGC	chr11:291962-292183(+)$1	221	147	179	13.4723
UCACCCACGCACUCCUUAGGAGAAGGUGGCUU	chr1:150526198-150526491(+)$1	293	58	90	12.3603
CAUUGACACCCUCGAGCUUCGAAGUGACAUGU	chr1:11147418-11147666(-)$1	248	89	121	12.8619
AGGAGUGAUUUGCUCUGGUGGGUUUCUCCUCC	chr3:194181418-194181659(-)$1	241	149	181	15.8500
AAAAUAAGCUUGAAGAAACUUUCCCUGCCUAU	chr7:151899957-151900190(-)$1	233	134	166	14.5473
UGGCCAUCUCACUGAACAUCACGCAGAAGGUG	chr8:145625771-145625985(-)$1	214	133	165	11.2681
AccgcggcgggcgcgggcgcgcggccAUGUUG	chr7:155437295-155437530(+)$1	235	51	83	12.1095
GAGGAAGAAAAGCCAAAGACUGGUGGAGCUUU	chr21:34136556-34136806(-)$1	250	78	110	14.3153
cggccUGGAGGCCGCGAAAGGUGGAGGCCGGG	chr1:215740775-215741048(+)$1	273	2	34	14.8419
CAGUGGCUCUGGGCCCAGCGGCUGGGGCACUG	chr19:50165224-50165469(-)$1	245	117	149	15.6749
AGCUGGGGGGCGGGUGCUGCCCUCUGAUCUCC	chr17:80045767-80045984(-)$1	217	24	56	12.4436
UGAGAGGGGGUGGGCGGAGGCCUUUCUGGAGG	chr20:49225725-49225969(-)$1	244	150	182	14.9290
GCAGCAGAAGGUGGGGCUGCCCCCUGAGGGCA	chr16:22319366-22319647(+)$1	281	170	202	10.2320
CGCAUGGGCAAGGACUUCUGUUCCUCAUGUGU	chr12:9577979-9578302(-)$1	323	27	59	16.6547
GCUUUCUGAAGGAGGAGGACCUCACGGAGAAG	chr21:44479320-44479546(-)$1	226	171	203	16.7688
UGCUUUUUUUGAUGUUCGCACAUUCUCAAAUG	chr9:134003637-134003928(+)$1	291	199	231	11.9099

#DB
(((((((.(((((((....))))..)))))))	chr15:34656357-34656609(-)$1	1	213	245	15.0629
.((...(((((((((....))))...))))).	chr15:93521375-93521631(+)$1	1	146	178	13.6447
(....((((..((((....))))..)))))))	chr12:48184973-48185191(-)$1	1	102	134	14.7688
(((((((...(((((......))))).)))))	chr4:68543284-68543540(-)$1	1	212	244	10.3754
)((((((....(((((...)))))....))))	chr9:131790324-131790632(-)$1	1	193	225	11.0700
((((.((((..((((....))))..)))))))	chr19:5657191-5657458(+)$1	1	199	231	13.9624
.(((((..(..((((....)))).)..)))))	chr21:47678881-47679107(-)$1	1	80	112	15.7451
.(..((((...((((....)))))))).))))	chr9:114135494-114135720(-)$1	1	72	104	14.7317
(((((..((.(.((((...)))).).))...)	chr17:80213206-80213520(-)$1	1	10	42	12.4521
.(((.((.((.((((....)))))).)).)))	chr12:116434182-116434439(-)$1	1	22	54	13.1748
(..(.....((((((....))))....))...	chr12:124915153-124915425(-)$1	1	157	189	13.7124
..(((.(((.((((.....)))).))))))..	chr3:172013112-172013385(+)$1	1	177	209	11.7454
((((((((...(((((...)))))))))).))	chr7:1477841-1478045(-)$1	1	135	167	11.1614
...((((((..((((....))))..))).)))	chrX:70782597-70782830(+)$1	1	188	220	12.4957
.(((((((...((((....)))))).))))).	chr17:40270970-40271196(-)$1	1	119	151	14.6619
((((((((...((((....))))..)))))).	chr9:139360321-139360587(-)$1	1	109	141	15.0135
(((.(((..(.((((....)))).)......)	chrX:153595035-153595271(-)$1	1	119	151	13.0975
.(((.(((((.((((...))))...)))))..	chrX:48652242-48652497(+)$1	1	34	66	12.7912
(((((((....((((.....))))...)))))	chr19:46275808-46276102(-)$1	1	258	290	12.3715
(((((((((((((((....)))))))))))))	chr10:93719440-93719665(+)$1	1	44	76	11.5764
((.(((((((.((((....))).).)))))))	chrX:153176153-153176390(-)$1	1	39	71	11.6842
.(((((((((.((((....))))...)))).)	chr21:47642444-47642698(-)$1	1	178	210	14.9263
(.(((((....((((...))))))))).))))	chr22:42271446-42271691(+)$1	1	64	96	14.0837
((((...(((((((((...)))).))))).))	chr1:22073458-22073704(-)$1	1	118	150	11.6099
(...(((.(...(((....)))..).))).))	chr5:179921450-179921730(+)$1	1	220	252	12.4593
.((((((..(.((((....)))))..))))))	chr19:19119025-19119336(-)$1	1	206	238	13.7843
)))(((((.(.((((....)))).)))))).(	chr17:46052270-46052514(+)$1	1	136	168	12.6679
((.(((((((..(((....)))..))))))).	chr9:131718528-131718753(+)$1	1	62	94	12.1523
(((...(((..((((...)))).))).))).)	chr14:104120869-104121124(+)$1	1	27	59	13.5157
(.(((((....((((....))))...))))))	chr11:34098006-34098262(+)$1	1	101	133	16.5140
(((((.((.(..((((...))))...).)).)	chr9:111641624-111641852(-)$1	1	121	153	13.3126
((((.(..((.((((....))))))..)))))	chr17:48818406-48818671(+)$1	1	114	146	13.7710
((((..((((.((((.....))))))))...)	chr12:57905455-57905700(+)$1	1	8	40	11.6986
((((((((((.((((....))))...))))))	chr2:71626596-71626835(+)$1	1	165	197	13.6402
((.(((((.(.((((...))))))))))))))	chr1:156220016-156220246(-)$1	1	88	120	12.1663
)((.((((((.((((....)))).)))))).)	chr16:89809208-89809445(-)$1	1	47	79	12.8501
(.(((((((..(((((...)))))..))))))	chr16:74976545-74976783(-)$1	1	175	207	11.4618
(((...(((((((((....)))).)))))...	chr11:291962-292183(+)$1	1	147	179	13.4723
.(((((((...((((...))))...))))...	chr1:150526198-150526491(+)$1	1	58	90	12.3603
(((((((((..((((...)))).)))......	chr1:11147418-11147666(-)$1	1	89	121	12.8619
(((((.((...((((....))))...))))))	chr3:194181418-194181659(-)$1	1	149	181	15.8500
.(((((.((..((((....))))...)).)))	chr7:151899957-151900190(-)$1	1	134	166	14.5473
(((((.(((...(((...)))...))).))).	chr8:145625771-145625985(-)$1	1	133	165	11.2681
((((((((((.((((....)))).))..))))	chr7:155437295-155437530(+)$1	1	51	83	12.1095
(((((((....((((.....))))....))))	chr21:34136556-34136806(-)$1	1	78	110	14.3153
((((((((...((((.....))))...)))))	chr1:215740775-215741048(+)$1	1	2	34	14.8419
(((((.(((..((((....))))))).)))))	chr19:50165224-50165469(-)$1	1	117	149	15.6749
((.(((((((.((((...)))).))...))))	chr17:80045767-80045984(-)$1	1	24	56	12.4436
(...((((...((((....))))))))...))	chr20:49225725-49225969(-)$1	1	150	182	14.9290
((.((...(((.(((....))))))....)).	chr16:22319366-22319647(+)$1	1	170	202	10.2320
((((((((...((((....)))))))))))))	chr12:9577979-9578302(-)$1	1	27	59	16.6547
(((((((....((((....))))....)))..	chr21:44479320-44479546(-)$1	1	171	203	16.7688
((((((.((((((((....)))...))))).)	chr9:134003637-134003928(+)$1	1	199	231	11.9099

#PSSM
g : 0.20	c : 0.13	: : 0.09	! : 0.07	f : 0.07	= : 0.07	e : 0.07	h : 0.05	a : 0.05	i : 0.03	[ : 0.03	b : 0.03	d : 0.01	& : 0.01	
g : 0.16	e : 0.15	c : 0.15	f : 0.11	b : 0.07	= : 0.07	h : 0.05	[ : 0.05	! : 0.03	" : 0.03	# : 0.01	a : 0.01	: : 0.01	d : 0.01	
g : 0.16	e : 0.16	f : 0.13	c : 0.11	[ : 0.09	h : 0.07	= : 0.07	b : 0.03	! : 0.03	" : 0.03	# : 0.01	: : 0.01	d : 0.01	
e : 0.22	g : 0.20	c : 0.11	" : 0.09	f : 0.09	h : 0.07	= : 0.05	[ : 0.03	# : 0.01	! : 0.01	a : 0.01	d : 0.01	b : 0.01	
e : 0.20	g : 0.16	c : 0.11	f : 0.09	" : 0.07	[ : 0.07	d : 0.07	h : 0.05	= : 0.05	# : 0.01	$ : 0.01	! : 0.01	b : 0.01	
e : 0.20	g : 0.15	" : 0.09	d : 0.09	[ : 0.09	f : 0.07	c : 0.07	h : 0.05	= : 0.05	! : 0.03	b : 0.01	$ : 0.01	a : 0.01	
e : 0.16	c : 0.16	d : 0.13	g : 0.11	f : 0.07	b : 0.07	! : 0.05	h : 0.05	= : 0.05	" : 0.03	[ : 0.03	$ : 0.01	
e : 0.16	d : 0.13	# : 0.11	c : 0.11	b : 0.09	! : 0.07	[ : 0.05	= : 0.05	g : 0.05	" : 0.03	f : 0.03	h : 0.03	$ : 0.01	
" : 0.18	c : 0.15	# : 0.11	b : 0.11	e : 0.09	d : 0.07	g : 0.05	[ : 0.05	a : 0.03	! : 0.03	$ : 0.01	= : 0.01	h : 0.01	f : 0.01	
" : 0.22	! : 0.16	# : 0.11	e : 0.09	b : 0.09	a : 0.09	c : 0.03	[ : 0.03	g : 0.03	d : 0.03	= : 0.01	h : 0.01	f : 0.01	
[ : 0.26	! : 0.20	" : 0.20	# : 0.11	e : 0.09	c : 0.03	a : 0.01	b : 0.01	d : 0.01	= : 0.01	
d : 0.73	e : 0.11	[ : 0.03	" : 0.03	! : 0.03	= : 0.01	a : 0.01	
d : 0.79	c : 0.11	e : 0.07	= : 0.01	
d : 0.79	c : 0.11	e : 0.07	= : 0.01	
d : 0.77	c : 0.11	e : 0.07	n : 0.01	= : 0.01	
m : 0.62	l : 0.15	n : 0.09	e : 0.05	d : 0.05	o : 0.01	
m : 0.62	l : 0.26	n : 0.09	o : 0.01	
m : 0.62	l : 0.26	n : 0.09	o : 0.01	
m : 0.62	d : 0.13	l : 0.11	n : 0.09	o : 0.01	c : 0.01	
d : 0.71	c : 0.11	n : 0.07	e : 0.05	o : 0.01	= : 0.01	
d : 0.79	c : 0.11	e : 0.05	o : 0.01	= : 0.01	
d : 0.79	c : 0.09	e : 0.07	= : 0.01	3 : 0.01	
d : 0.66	e : 0.09	3 : 0.07	] : 0.07	2 : 0.03	= : 0.01	a : 0.01	c : 0.01	
3 : 0.20	] : 0.16	2 : 0.13	e : 0.11	d : 0.11	b : 0.07	c : 0.07	4 : 0.03	= : 0.03	a : 0.03	
3 : 0.22	2 : 0.13	e : 0.11	c : 0.11	a : 0.09	b : 0.09	4 : 0.07	d : 0.05	= : 0.03	] : 0.01	g : 0.01	f : 0.01	
3 : 0.18	e : 0.16	c : 0.13	d : 0.11	4 : 0.09	2 : 0.07	] : 0.07	f : 0.03	= : 0.03	g : 0.03	6 : 0.01	b : 0.01	
e : 0.20	d : 0.13	c : 0.09	4 : 0.09	b : 0.07	] : 0.05	2 : 0.05	f : 0.05	3 : 0.05	g : 0.05	= : 0.03	6 : 0.01	a : 0.01	h : 0.01	> : 0.01	
e : 0.20	c : 0.11	d : 0.09	g : 0.09	b : 0.09	] : 0.07	4 : 0.05	f : 0.05	= : 0.05	h : 0.03	3 : 0.03	6 : 0.01	a : 0.01	> : 0.01	2 : 0.01	
e : 0.24	g : 0.13	c : 0.09	d : 0.07	f : 0.07	3 : 0.05	] : 0.05	b : 0.05	h : 0.05	= : 0.05	a : 0.03	6 : 0.01	> : 0.01	4 : 0.01	
e : 0.22	g : 0.13	c : 0.11	f : 0.07	h : 0.07	= : 0.07	3 : 0.05	] : 0.05	b : 0.05	4 : 0.03	i : 0.01	6 : 0.01	d : 0.01	8 : 0.01	> : 0.01	
e : 0.16	g : 0.15	= : 0.09	] : 0.09	f : 0.07	h : 0.07	c : 0.07	2 : 0.05	3 : 0.03	4 : 0.03	i : 0.01	6 : 0.01	a : 0.01	: : 0.01	8 : 0.01	> : 0.01	b : 0.01	
g : 0.16	e : 0.13	h : 0.09	2 : 0.09	= : 0.09	f : 0.07	c : 0.07	3 : 0.03	4 : 0.03	b : 0.03	d : 0.03	] : 0.03	i : 0.01	D : 0.01	8 : 0.01	> : 0.01	

#score	706.1551671633699
#seq	53
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_CDS_m2_run1.txt

#BEAR
gggggggffffff[ccclllccc]ffffffbb!!eee	chr13:98828403-98828661(+)$1	258	167	204	13.8258
[ccc!!bbccc[eeeeellleeeee]ccc]bb22ccc	chr20:32251316-32251596(-)$1	280	198	235	15.7685
ffff!!ccc[ffffffooooooffffff]ccc22fff	chr16:75281748-75282081(-)$1	333	218	255	15.6443
c]bbdddddddd[ddddoooooodddd]dddd22ddd	chr4:140640572-140640837(+)$1	265	74	111	14.9148
iiiiiiibb[bb[ddddllldddd22bb22bb]iiii	chr4:140640706-140640936(+)$1	230	159	196	13.6626
c]bbdddddddd[ddddoooooodddd]dddd22ddd	chr4:140640515-140640772(+)$1	257	131	168	14.9148
gggg!!ggggggg[ccclllccc]ggggggg22gggg	chr13:98828491-98828716(+)$1	225	79	116	15.8822
dccc"""ffffff[bbnnnnnbb]ffffff4444ccc	chr20:32251251-32251486(-)$1	235	32	69	13.7445

#otherMatches

#Seq PSSM
AGUUCUUUGGCGGGGUUAAAGAUGCCGCCGGUUGGCU	chr13:98828403-98828661(+)$1	258	167	204	13.8258
GUUGCCCAGCGUUGGCCAGCGGCUGCCGCUUGUCCAG	chr20:32251316-32251596(-)$1	280	198	235	15.7685
GCUGUUCUUAUUAUUGUGAACUUAGUGACAAGUGUGG	chr16:75281748-75282081(-)$1	333	218	255	15.6443
CUUGGCUCUGGCUGCUUGGAGCAAAGCUGCCACUGGG	chr4:140640572-140640837(+)$1	265	74	111	14.9148
CUGACUGGCUCAGUCCCUGUGGGAAGUGCUGCUUGGU	chr4:140640706-140640936(+)$1	230	159	196	13.6626
CUUGGCUCUGGCUGCUUGGAGCAAAGCUGCCACUGGG	chr4:140640515-140640772(+)$1	257	131	168	14.9148
AGUUCUUUGGCGGGGUUAAAGAUGCCGCCGGUUGGCU	chr13:98828491-98828716(+)$1	225	79	116	15.8822
GCGCAAUCUGGGUGCCGCCGGGGAGCCCAGCCCAGCG	chr20:32251251-32251486(-)$1	235	32	69	13.7445

#DB
)))))))((((((.(((...))).))))))((..(((	chr13:98828403-98828661(+)$1	1	167	204	13.8258
.(((..(((((.(((((...))))).))).))..)))	chr20:32251316-32251596(-)$1	1	198	235	15.7685
((((..(((.((((((......)))))).)))..)))	chr16:75281748-75282081(-)$1	1	218	255	15.6443
).))((((((((.((((......)))).))))..)))	chr4:140640572-140640837(+)$1	1	74	111	14.9148
(((((((((.((.((((...))))..))..)).))))	chr4:140640706-140640936(+)$1	1	159	196	13.6626
).))((((((((.((((......)))).))))..)))	chr4:140640515-140640772(+)$1	1	131	168	14.9148
((((..(((((((.(((...))).)))))))..))))	chr13:98828491-98828716(+)$1	1	79	116	15.8822
((((...((((((.((.....)).))))))....)))	chr20:32251251-32251486(-)$1	1	32	69	13.7445

#PSSM
g : 0.25	c : 0.25	[ : 0.12	f : 0.12	i : 0.12	d : 0.12	
g : 0.25	c : 0.25	] : 0.25	f : 0.12	i : 0.12	
g : 0.25	c : 0.25	b : 0.25	f : 0.12	i : 0.12	
g : 0.25	c : 0.25	b : 0.25	f : 0.12	i : 0.12	
! : 0.37	d : 0.25	g : 0.12	i : 0.12	" : 0.12	
! : 0.37	d : 0.25	g : 0.12	i : 0.12	" : 0.12	
g : 0.25	d : 0.25	b : 0.12	c : 0.12	i : 0.12	" : 0.12	
f : 0.25	b : 0.25	d : 0.25	c : 0.12	g : 0.12	
f : 0.25	c : 0.25	d : 0.25	b : 0.12	g : 0.12	
f : 0.25	[ : 0.25	d : 0.25	c : 0.12	g : 0.12	
f : 0.37	d : 0.25	c : 0.12	b : 0.12	g : 0.12	
f : 0.37	d : 0.25	[ : 0.12	b : 0.12	g : 0.12	
f : 0.37	[ : 0.37	e : 0.12	g : 0.12	
[ : 0.37	d : 0.37	e : 0.12	f : 0.12	
d : 0.37	c : 0.25	e : 0.12	f : 0.12	b : 0.12	
d : 0.37	c : 0.25	e : 0.12	f : 0.12	b : 0.12	
d : 0.37	c : 0.25	e : 0.12	o : 0.12	n : 0.12	
l : 0.50	o : 0.37	n : 0.12	
l : 0.50	o : 0.37	n : 0.12	
l : 0.50	o : 0.37	n : 0.12	
o : 0.37	c : 0.25	e : 0.12	d : 0.12	n : 0.12	
o : 0.37	c : 0.25	e : 0.12	d : 0.12	b : 0.12	
c : 0.25	o : 0.25	e : 0.12	f : 0.12	d : 0.12	b : 0.12	
] : 0.37	d : 0.37	e : 0.12	f : 0.12	
f : 0.37	d : 0.25	e : 0.12	2 : 0.12	g : 0.12	
f : 0.37	d : 0.25	] : 0.12	2 : 0.12	g : 0.12	
f : 0.37	d : 0.25	c : 0.12	b : 0.12	g : 0.12	
f : 0.37	] : 0.25	c : 0.12	b : 0.12	g : 0.12	
f : 0.25	d : 0.25	c : 0.12	] : 0.12	2 : 0.12	g : 0.12	
f : 0.25	d : 0.25	] : 0.12	c : 0.12	2 : 0.12	g : 0.12	
b : 0.37	d : 0.25	c : 0.12	g : 0.12	4 : 0.12	
b : 0.37	d : 0.25	c : 0.12	2 : 0.12	4 : 0.12	
2 : 0.62	! : 0.12	] : 0.12	4 : 0.12	
2 : 0.50	! : 0.12	i : 0.12	g : 0.12	4 : 0.12	
c : 0.25	d : 0.25	e : 0.12	f : 0.12	i : 0.12	g : 0.12	
c : 0.25	d : 0.25	e : 0.12	f : 0.12	i : 0.12	g : 0.12	
c : 0.25	d : 0.25	e : 0.12	f : 0.12	i : 0.12	g : 0.12	

#score	118.35782554632502
#seq	8
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_UTR_m1_run2.txt

#BEAR
cc[=============nnnnn=============22cc	chr5:73935902-73936220(-)$1	318	153	191	19.1934
ee!!ccc[gggggggpppppppggggggg]ccc]eeee	chr17:45912175-45912393(+)$1	218	108	146	23.5055
==========!!ddddoooooodddd22==========	chr3:187454542-187454771(-)$1	229	139	177	17.5846
ee!!ccc[gggggggpppppppggggggg]ccc]eeee	chr17:45912165-45912375(+)$1	210	118	156	23.5055
ee!!ccc[gggggggpppppppggggggg]ccc]eeee	chr17:45912161-45912365(+)$1	204	122	160	23.5055
============!!cccnnnnnccc333==========	chr14:39736596-39736844(+)$1	248	204	242	19.0340
ccc"""iiiiiiiiipppppppiiiiiiiii22cccbb	chr3:41241454-41241736(+)$1	282	124	162	21.0543

#otherMatches

#Seq PSSM
GCAGGGGUGUGUUCGCGAGGGGUGAGCGUGCUCCGAGC	chr5:73935902-73936220(-)$1	318	153	191	19.1934
gguugaucuucagccuuccccugguugaguauucccag	chr17:45912175-45912393(+)$1	218	108	146	23.5055
CCAAAUGCUGGUGGUGCUUCCACACCUGCGGCAUUUGG	chr3:187454542-187454771(-)$1	229	139	177	17.5846
gguugaucuucagccuuccccugguugaguauucccag	chr17:45912165-45912375(+)$1	210	118	156	23.5055
gguugaucuucagccuuccccugguugaguauucccag	chr17:45912161-45912365(+)$1	204	122	160	23.5055
GCUUUGGGGUCUAAGCCGCCGUGGUCAGAGGUCCCGAA	chr14:39736596-39736844(+)$1	248	204	242	19.0340
CCGCCUUCUCAGCUCUUGCGGCGAGUUGGGGUUCGGGC	chr3:41241454-41241736(+)$1	282	124	162	21.0543

#DB
((.(((((((((((((.....)))))))))))))..))	chr5:73935902-73936220(-)$1	1	153	191	19.1934
((..(((.(((((((.......))))))).))).))))	chr17:45912175-45912393(+)$1	1	108	146	23.5055
((((((((((..((((......))))..))))))))))	chr3:187454542-187454771(-)$1	1	139	177	17.5846
((..(((.(((((((.......))))))).))).))))	chr17:45912165-45912375(+)$1	1	118	156	23.5055
((..(((.(((((((.......))))))).))).))))	chr17:45912161-45912365(+)$1	1	122	160	23.5055
((((((((((((..(((.....)))...))))))))))	chr14:39736596-39736844(+)$1	1	204	242	19.0340
(((...(((((((((.......)))))))))..)))))	chr3:41241454-41241736(+)$1	1	124	162	21.0543

#PSSM
e : 0.42	c : 0.28	= : 0.28	
e : 0.42	c : 0.28	= : 0.28	
! : 0.42	= : 0.28	[ : 0.14	c : 0.14	
= : 0.42	! : 0.42	" : 0.14	
= : 0.42	c : 0.42	" : 0.14	
= : 0.42	c : 0.42	" : 0.14	
= : 0.42	c : 0.42	i : 0.14	
= : 0.42	[ : 0.42	i : 0.14	
= : 0.42	g : 0.42	i : 0.14	
= : 0.42	g : 0.42	i : 0.14	
g : 0.42	= : 0.28	! : 0.14	i : 0.14	
g : 0.42	= : 0.28	! : 0.14	i : 0.14	
g : 0.42	= : 0.14	d : 0.14	! : 0.14	i : 0.14	
g : 0.42	= : 0.14	d : 0.14	! : 0.14	i : 0.14	
g : 0.42	= : 0.14	d : 0.14	c : 0.14	i : 0.14	
p : 0.57	= : 0.14	d : 0.14	c : 0.14	
p : 0.57	n : 0.14	o : 0.14	c : 0.14	
p : 0.57	n : 0.28	o : 0.14	
p : 0.57	n : 0.28	o : 0.14	
p : 0.57	n : 0.28	o : 0.14	
p : 0.57	n : 0.28	o : 0.14	
p : 0.57	= : 0.14	o : 0.14	n : 0.14	
g : 0.42	= : 0.14	d : 0.14	c : 0.14	i : 0.14	
g : 0.42	= : 0.14	d : 0.14	c : 0.14	i : 0.14	
g : 0.42	= : 0.14	d : 0.14	c : 0.14	i : 0.14	
g : 0.42	= : 0.14	d : 0.14	3 : 0.14	i : 0.14	
g : 0.42	= : 0.14	2 : 0.14	3 : 0.14	i : 0.14	
g : 0.42	= : 0.14	2 : 0.14	3 : 0.14	i : 0.14	
= : 0.42	g : 0.42	i : 0.14	
= : 0.42	] : 0.42	i : 0.14	
= : 0.42	c : 0.42	i : 0.14	
= : 0.42	c : 0.42	2 : 0.14	
= : 0.42	c : 0.42	2 : 0.14	
= : 0.42	] : 0.42	c : 0.14	
e : 0.42	= : 0.28	2 : 0.14	c : 0.14	
e : 0.42	= : 0.28	2 : 0.14	c : 0.14	
e : 0.42	= : 0.28	c : 0.14	b : 0.14	
e : 0.42	= : 0.28	c : 0.14	b : 0.14	

#score	147.3831272700857
#seq	7
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_UTR_m3_run2.txt

#BEAR
c!!ggggggg####ccc####bbppp	chr1:214214416-214214672(+)$1	256	91	117	10.4463
[eeeee!!dddd[dddd[a####ccc	chr8:71022116-71022349(-)$1	233	141	167	10.4740
hhhhhhhh####eeeee####eeeee	chr14:39501044-39501278(-)$1	234	26	52	10.2062
eeggggggg[cccdddd"""dddd[b	chr6:159054738-159055051(+)$1	313	201	227	10.6221
$$ccc[gggggggdddd%%%%%%fff	chr15:59171570-59171853(-)$1	283	114	140	10.4216
""iiiiiiiiicccdddd"""eeeee	chr18:77897977-77898258(+)$1	281	159	185	12.2096
ggggg[gggggggdddd[cccfffff	chr19:18499837-18500084(+)$1	247	56	82	9.2073
ggggggg!!ccc!!ccc####fffff	chr12:115108575-115108820(-)$1	245	136	162	11.3672
[eeeeeeeeee!!dddd$$$$$dddd	chr4:141302364-141302644(+)$1	280	100	126	11.4218
=========####dddd&&&&&&&ee	chr3:30735424-30735665(+)$1	241	44	70	11.5861
a!!==============####dddd[	chr11:102101388-102101616(+)$1	228	52	78	12.2154
eee!!dddd####dddd"""cccmmm	chr15:73852543-73852809(-)$1	266	136	162	9.7530
iiiiiiiii####ccc[bb!!a[eee	chr2:73989259-73989526(-)$1	267	91	117	10.5995
d!!ggggggg"""dddd"""======	chr1:36322889-36323226(+)$1	337	113	139	13.7085
####ffffff"""dddd%%%%%%eee	chr20:4682044-4682318(+)$1	274	22	48	11.6845
!!ccc[eeeee!!dddd####ccc$$	chr11:20142517-20142821(+)$1	304	100	126	13.0002
""============xxxxxxxxxxxx	chr7:90044552-90044804(+)$1	252	59	85	9.8484
^^===========dddd[ffffffrr	chr6:64290946-64291203(+)$1	257	129	155	9.2606
"""ggggggg"""ddddxxxxxxxxx	chr9:86583194-86583468(-)$1	274	187	213	12.3337
cc[ccc[eeeee!!ccc####ddddo	chr4:1694994-1695256(-)$1	262	60	86	10.1207
============[dddd[ccc####c	chr8:74236465-74236716(+)$1	251	61	87	11.1745
iiiiii[dddd!!dddd"""dddd[b	chr12:19672074-19672336(+)$1	262	85	111	11.4647
!!bb[eeeee"""dddd!!ggggggg	chr8:87570777-87571086(+)$1	309	147	173	10.6733
==========ggggggg$$$$$ccc"	chr4:113189586-113189871(+)$1	285	126	152	11.5068
!!iiiiiiiii!!dddd[ccc"""cc	chr1:150190754-150191019(-)$1	265	156	182	11.7888
d[ccc[eeeee"""ccc####ggggg	chr8:71022216-71022500(-)$1	284	126	152	11.3860
###ggggggg"""dddd$$$$$bboo	chr2:188331390-188331666(-)$1	276	152	178	13.8510
c[ffffff$$$$$dddd$$$$$hhhh	chr2:97477372-97477673(+)$1	301	69	95	10.4018
==========="""ccc####eeeee	chr5:96368144-96368376(+)$1	232	36	62	13.6898
!!ggggggg[cccdddd####hhhhh	chr9:5919342-5919676(-)$1	334	208	234	11.8955
####ggggggg!!dddd$$$$$eeee	chr14:31363145-31363442(-)$1	297	199	225	14.1766
ee####gggggggdddd$$$$$eeee	chr20:61431550-61431812(+)$1	262	149	175	11.9730
eeeggggggg"""dddd####bb!!e	chr7:90043187-90043558(+)$1	371	206	232	13.6637
eee"""eeeee!!dddd"""ffffff	chr5:52782092-52782367(+)$1	275	87	113	10.7995
$ggggggg$$$$$dddd####cccxx	chr5:38937960-38938290(-)$1	330	133	159	13.1269
"""ggggggg"""bb[bb"""fffff	chr7:94298404-94298624(+)$1	220	116	142	11.1450
b[dddd[eeeee[dddd$$$$$ccc!	chr5:162918117-162918430(+)$1	313	41	67	10.8176
===========bbdddd%%%%%%eee	chr8:124332002-124332277(-)$1	275	85	111	11.2830
ggggg[dddd"""dddd^^^^^^^^^	chr1:151376722-151377045(-)$1	323	3	29	10.9913
iiiiiiiidddd[eeeee"""eeeee	chr20:4681892-4682181(+)$1	289	30	56	10.2166
##==========[bb[a[a[bb[ddd	chr8:17424959-17425235(+)$1	276	159	185	9.4553
:iiiiiiiii"""dddd[bb[cccll	chr21:40195318-40195562(+)$1	244	104	130	10.0912
""bbffffff!!eeeee####ccc!!	chr12:80167992-80168244(-)$1	252	57	83	10.8864
!!==========[dddd####fffff	chr6:7586620-7586889(+)$1	269	126	152	14.5090
''bb####ccc!!dddd$$$$$eeee	chr17:43227741-43228035(+)$1	294	19	45	11.0727
hhhhhhh[bb!!eeeee####fffff	chr1:16450955-16451221(-)$1	266	142	168	9.3905
mccc]a]ffffffdddd####eeeee	chr2:32842954-32843191(+)$1	237	27	53	10.0573

#otherMatches

#Seq PSSM
CCUUGUGUGCCUUCCAUCUCCUCUUA	chr1:214214416-214214672(+)$1	256	91	117	10.4463
UGAUGUUUGUAUUUCUAGUGUGAGCA	chr8:71022116-71022349(-)$1	233	141	167	10.4740
UAAAGCAGAAACUUAAGAAAAAAUUG	chr14:39501044-39501278(-)$1	234	26	52	10.2062
CAUAUUCUGUGAUAUGGUUUACAACU	chr6:159054738-159055051(+)$1	313	201	227	10.6221
CUGAGUAUUAUGUAACCUAUUUUUGC	chr15:59171570-59171853(-)$1	283	114	140	10.4216
UAAAUUCAAAGAGAGCUUGUUGAACA	chr18:77897977-77898258(+)$1	281	159	185	12.2096
GGGGUGACCUUCUUGGGGACUCGGGG	chr19:18499837-18500084(+)$1	247	56	82	9.2073
GGAAAAUUAAACUUUAAUUUAUUGAC	chr12:115108575-115108820(-)$1	245	136	162	11.3672
AGAGACUUUAUGAUUAGAAUUGCAUA	chr4:141302364-141302644(+)$1	280	100	126	11.4218
AUAGGAAUGUGAAUGCUAUAUACUCU	chr3:30735424-30735665(+)$1	241	44	70	11.5861
guugguuUUGUCGGAACCUAGGCAAA	chr11:102101388-102101616(+)$1	228	52	78	12.2154
UGCACUGAUGUGUUGAACCUUAUUCU	chr15:73852543-73852809(-)$1	266	136	162	9.7530
UUUUAGUGUUUUUGUUAUGUUCUGUU	chr2:73989259-73989526(-)$1	267	91	117	10.5995
GUUUGCAUUUGUUCAUUUGACUAAUG	chr1:36322889-36323226(+)$1	337	113	139	13.7085
AAUCGUUUCAUGUAAGAAUCCAAAGU	chr20:4682044-4682318(+)$1	274	22	48	11.6845
CAAGACUUGCCUAGAUCUUUGUUGUA	chr11:20142517-20142821(+)$1	304	100	126	13.0002
UUUUGAGAUUAAUGUUAAUUUUCCCU	chr7:90044552-90044804(+)$1	252	59	85	9.8484
CAAAAAAAGAAAUGGGUUUCUGCUAA	chr6:64290946-64291203(+)$1	257	129	155	9.2606
UUGUAUGCAAAUUGAAAGAAAAAGAU	chr9:86583194-86583468(-)$1	274	187	213	12.3337
AAUUAUUUUUGCCUUACUUUCUUAAG	chr4:1694994-1695256(-)$1	262	60	86	10.1207
CAUUUUUACAGUAUUUUUUUGUAAAG	chr8:74236465-74236716(+)$1	251	61	87	11.1745
AUAUAUUUUUAUAUUUUGAAAUGUAC	chr12:19672074-19672336(+)$1	262	85	111	11.4647
GUUUACUUUCAUAUGAUGAAAAUGCU	chr8:87570777-87571086(+)$1	309	147	173	10.6733
UGAUAGGAUCUGAAUUGAUACAGAAU	chr4:113189586-113189871(+)$1	285	126	152	11.5068
GUUAAAAACAAACAAAAAAAUUUGCA	chr1:150190754-150191019(-)$1	265	156	182	11.7888
UCCUCAUGAAGUUGCAUCUGAGAUGU	chr8:71022216-71022500(-)$1	284	126	152	11.3860
UCAGAGUUGCUUUUCUAAUCUUGUUA	chr2:188331390-188331666(-)$1	276	152	178	13.8510
AUAAUAUUUUAAUUUGUAUAUUUUUG	chr2:97477372-97477673(+)$1	301	69	95	10.4018
AAAAAUGUACAUACAUGUUUUUGAUA	chr5:96368144-96368376(+)$1	232	36	62	13.6898
ACUGUUCUGAGGAGGGUUUCAAGGUU	chr9:5919342-5919676(-)$1	334	208	234	11.8955
GAUCAGUUUGCGAGUUUUGAUGAGUU	chr14:31363145-31363442(-)$1	297	199	225	14.1766
UUAAACCUGUGUUGUAUUUUUUCUGA	chr20:61431550-61431812(+)$1	262	149	175	11.9730
UAAAUUGUAUUAUUGGGAUUAGAAUG	chr7:90043187-90043558(+)$1	371	206	232	13.6637
GUUUUUGAAGAAAUUUAUUCGUGAAA	chr5:52782092-52782367(+)$1	275	87	113	10.7995
ACCUUGAUUUUUUUUGUUGUGAUUUU	chr5:38937960-38938290(-)$1	330	133	159	13.1269
GGGUUAUUUAGAAUGUUAGAAUAAUA	chr7:94298404-94298624(+)$1	220	116	142	11.1450
UCAUGGAAGUAAACAUCUGAGAAACC	chr5:162918117-162918430(+)$1	313	41	67	10.8176
GGUUUAUUAUAAAUUAUUCUUCUAGA	chr8:124332002-124332277(-)$1	275	85	111	11.2830
CUAAAAACAGGUUUUUGUGACuuuuu	chr1:151376722-151377045(-)$1	323	3	29	10.9913
uauauauuGCAUAGGACAGACUUAGG	chr20:4681892-4682181(+)$1	289	30	56	10.2166
UAAGUUGGGUUUAUGGUGGGCUUUGA	chr8:17424959-17425235(+)$1	276	159	185	9.4553
AAUUUUGCAAAGAUUUAAUCUGCCAA	chr21:40195318-40195562(+)$1	244	104	130	10.0912
GUACCCCUUCAUUUUAAAAGGUCAUU	chr12:80167992-80168244(-)$1	252	57	83	10.8864
UGUACUUUAAGGUGUCUUUAUGAAGU	chr6:7586620-7586889(+)$1	269	126	152	14.5090
CUGGCUUUGGUUUCGUAAAUUUAGCU	chr17:43227741-43228035(+)$1	294	19	45	11.0727
GCUGGGGACAGAGGGUGUCAAACAUU	chr1:16450955-16451221(-)$1	266	142	168	9.3905
UGUGGACUUCAUAGACACAAAGGCUU	chr2:32842954-32843191(+)$1	237	27	53	10.0573

#DB
(..(((((((....(((....((...	chr1:214214416-214214672(+)$1	1	91	117	10.4463
.(((((..((((.((((.(....(((	chr8:71022116-71022349(-)$1	1	141	167	10.4740
((((((((....(((((....(((((	chr14:39501044-39501278(-)$1	1	26	52	10.2062
(((((((((.(((((((...((((.(	chr6:159054738-159055051(+)$1	1	201	227	10.6221
..(((.(((((((((((......(((	chr15:59171570-59171853(-)$1	1	114	140	10.4216
..((((((((((((((((...(((((	chr18:77897977-77898258(+)$1	1	159	185	12.2096
(((((.(((((((((((.((((((((	chr19:18499837-18500084(+)$1	1	56	82	9.2073
(((((((..(((..(((....(((((	chr12:115108575-115108820(-)$1	1	136	162	11.3672
.((((((((((..((((.....((((	chr4:141302364-141302644(+)$1	1	100	126	11.4218
(((((((((....((((.......((	chr3:30735424-30735665(+)$1	1	44	70	11.5861
(..((((((((((((((....((((.	chr11:102101388-102101616(+)$1	1	52	78	12.2154
(((..((((....((((...(((...	chr15:73852543-73852809(-)$1	1	136	162	9.7530
(((((((((....(((.((..(.(((	chr2:73989259-73989526(-)$1	1	91	117	10.5995
(..(((((((...((((...((((((	chr1:36322889-36323226(+)$1	1	113	139	13.7085
....((((((...((((......(((	chr20:4682044-4682318(+)$1	1	22	48	11.6845
..(((.(((((..((((....(((..	chr11:20142517-20142821(+)$1	1	100	126	13.0002
..((((((((((((............	chr7:90044552-90044804(+)$1	1	59	85	9.8484
..)))))))))))((((.((((((..	chr6:64290946-64291203(+)$1	1	129	155	9.2606
...(((((((...((((.........	chr9:86583194-86583468(-)$1	1	187	213	12.3337
((.(((.(((((..(((....((((.	chr4:1694994-1695256(-)$1	1	60	86	10.1207
((((((((((((.((((.(((....(	chr8:74236465-74236716(+)$1	1	61	87	11.1745
((((((.((((..((((...((((.(	chr12:19672074-19672336(+)$1	1	85	111	11.4647
..((.(((((...((((..(((((((	chr8:87570777-87571086(+)$1	1	147	173	10.6733
(((((((((((((((((.....(((.	chr4:113189586-113189871(+)$1	1	126	152	11.5068
..(((((((((..((((.(((...((	chr1:150190754-150191019(-)$1	1	156	182	11.7888
(.(((.(((((...(((....(((((	chr8:71022216-71022500(-)$1	1	126	152	11.3860
...(((((((...((((.....((..	chr2:188331390-188331666(-)$1	1	152	178	13.8510
(.((((((.....((((.....((((	chr2:97477372-97477673(+)$1	1	69	95	10.4018
(((((((((((...(((....(((((	chr5:96368144-96368376(+)$1	1	36	62	13.6898
..(((((((.(((((((....(((((	chr9:5919342-5919676(-)$1	1	208	234	11.8955
....(((((((..((((.....((((	chr14:31363145-31363442(-)$1	1	199	225	14.1766
((....(((((((((((.....((((	chr20:61431550-61431812(+)$1	1	149	175	11.9730
)))(((((((...((((....((..(	chr7:90043187-90043558(+)$1	1	206	232	13.6637
(((...(((((..((((...((((((	chr5:52782092-52782367(+)$1	1	87	113	10.7995
.(((((((.....((((....(((..	chr5:38937960-38938290(-)$1	1	133	159	13.1269
...(((((((...((.((...(((((	chr7:94298404-94298624(+)$1	1	116	142	11.1450
(.((((.(((((.((((.....(((.	chr5:162918117-162918430(+)$1	1	41	67	10.8176
(((((((((((((((((......(((	chr8:124332002-124332277(-)$1	1	85	111	11.2830
(((((.((((...((((.........	chr1:151376722-151377045(-)$1	1	3	29	10.9913
))))))))((((.(((((...(((((	chr20:4681892-4682181(+)$1	1	30	56	10.2166
..((((((((((.((.(.(.((.(((	chr8:17424959-17425235(+)$1	1	159	185	9.4553
.(((((((((...((((.((.(((..	chr21:40195318-40195562(+)$1	1	104	130	10.0912
..((((((((..(((((....(((..	chr12:80167992-80168244(-)$1	1	57	83	10.8864
..((((((((((.((((....(((((	chr6:7586620-7586889(+)$1	1	126	152	14.5090
..((....(((..((((.....((((	chr17:43227741-43228035(+)$1	1	19	45	11.0727
(((((((.((..(((((....(((((	chr1:16450955-16451221(-)$1	1	142	168	9.3905
.))).).))))))((((....(((((	chr2:32842954-32843191(+)$1	1	27	53	10.0573

#PSSM
e : 0.10	" : 0.10	= : 0.10	! : 0.10	# : 0.08	c : 0.06	g : 0.06	i : 0.06	[ : 0.04	h : 0.04	$ : 0.04	d : 0.04	a : 0.02	^ : 0.02	b : 0.02	: : 0.02	' : 0.02	m : 0.02	
! : 0.17	e : 0.14	" : 0.10	= : 0.10	g : 0.08	i : 0.08	# : 0.08	[ : 0.06	h : 0.04	c : 0.04	$ : 0.02	^ : 0.02	' : 0.02	
= : 0.19	g : 0.12	i : 0.12	e : 0.10	c : 0.08	# : 0.08	! : 0.06	b : 0.06	h : 0.04	" : 0.04	[ : 0.02	f : 0.02	d : 0.02	
g : 0.25	= : 0.21	i : 0.12	c : 0.10	# : 0.06	b : 0.06	e : 0.04	h : 0.04	! : 0.02	f : 0.02	" : 0.02	d : 0.02	
g : 0.27	= : 0.21	i : 0.12	c : 0.08	f : 0.06	e : 0.04	h : 0.04	# : 0.04	! : 0.02	[ : 0.02	" : 0.02	d : 0.02	] : 0.02	
g : 0.23	= : 0.21	i : 0.12	[ : 0.10	e : 0.06	f : 0.06	h : 0.04	d : 0.04	# : 0.04	c : 0.02	" : 0.02	a : 0.02	
g : 0.29	= : 0.21	i : 0.10	e : 0.10	f : 0.06	[ : 0.06	h : 0.04	d : 0.04	! : 0.02	# : 0.02	] : 0.02	
g : 0.27	= : 0.21	e : 0.14	i : 0.10	f : 0.08	d : 0.06	! : 0.04	h : 0.02	# : 0.02	[ : 0.02	
g : 0.25	= : 0.21	e : 0.14	d : 0.10	i : 0.08	f : 0.06	$ : 0.04	# : 0.02	! : 0.02	c : 0.02	b : 0.02	
g : 0.21	= : 0.19	e : 0.14	d : 0.08	# : 0.08	i : 0.06	f : 0.06	[ : 0.04	c : 0.04	$ : 0.04	b : 0.02	
" : 0.19	= : 0.17	e : 0.12	# : 0.10	g : 0.10	c : 0.08	d : 0.06	i : 0.04	$ : 0.04	! : 0.04	f : 0.02	
" : 0.23	! : 0.19	= : 0.12	# : 0.10	c : 0.08	g : 0.08	d : 0.04	e : 0.04	$ : 0.04	b : 0.02	f : 0.02	
" : 0.23	! : 0.19	[ : 0.12	# : 0.08	g : 0.08	e : 0.06	c : 0.06	= : 0.06	$ : 0.04	b : 0.02	f : 0.02	
d : 0.65	e : 0.08	c : 0.04	! : 0.04	= : 0.04	" : 0.04	b : 0.04	# : 0.02	g : 0.02	
d : 0.68	c : 0.12	e : 0.08	b : 0.04	= : 0.02	x : 0.02	g : 0.02	
d : 0.68	c : 0.12	e : 0.08	[ : 0.04	= : 0.02	x : 0.02	g : 0.02	
d : 0.68	c : 0.10	e : 0.08	= : 0.02	[ : 0.02	x : 0.02	g : 0.02	b : 0.02	a : 0.02	
# : 0.31	$ : 0.17	[ : 0.14	" : 0.10	% : 0.06	b : 0.04	x : 0.04	d : 0.02	& : 0.02	! : 0.02	^ : 0.02	e : 0.02	
# : 0.31	" : 0.17	$ : 0.17	% : 0.06	c : 0.06	a : 0.04	b : 0.04	x : 0.04	& : 0.02	f : 0.02	! : 0.02	^ : 0.02	
# : 0.34	" : 0.17	$ : 0.17	% : 0.06	c : 0.06	x : 0.04	& : 0.02	! : 0.02	f : 0.02	g : 0.02	^ : 0.02	[ : 0.02	b : 0.02	
# : 0.34	$ : 0.17	c : 0.08	% : 0.06	" : 0.06	d : 0.04	x : 0.04	f : 0.04	& : 0.02	! : 0.02	= : 0.02	g : 0.02	^ : 0.02	b : 0.02	[ : 0.02	
$ : 0.17	f : 0.14	e : 0.10	c : 0.10	d : 0.08	b : 0.06	% : 0.06	# : 0.04	x : 0.04	g : 0.04	& : 0.02	a : 0.02	= : 0.02	" : 0.02	h : 0.02	^ : 0.02	
e : 0.17	f : 0.14	c : 0.14	d : 0.10	b : 0.06	% : 0.06	# : 0.04	[ : 0.04	x : 0.04	g : 0.04	h : 0.04	& : 0.02	= : 0.02	" : 0.02	^ : 0.02	
e : 0.23	f : 0.17	c : 0.14	d : 0.12	x : 0.04	g : 0.04	h : 0.04	p : 0.02	& : 0.02	m : 0.02	= : 0.02	# : 0.02	" : 0.02	b : 0.02	! : 0.02	^ : 0.02	
e : 0.25	f : 0.14	c : 0.08	d : 0.08	x : 0.06	[ : 0.04	g : 0.04	h : 0.04	! : 0.04	p : 0.02	m : 0.02	= : 0.02	$ : 0.02	r : 0.02	# : 0.02	o : 0.02	^ : 0.02	l : 0.02	
e : 0.27	f : 0.14	c : 0.06	x : 0.06	b : 0.04	d : 0.04	o : 0.04	g : 0.04	h : 0.04	! : 0.04	p : 0.02	[ : 0.02	m : 0.02	= : 0.02	$ : 0.02	r : 0.02	" : 0.02	^ : 0.02	l : 0.02	

#score	531.9768224285402
#seq	47
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_UTR_m1_run1.txt

#BEAR
#ccc^^^^^^^^^^^^^^^^^^^^^^^ccc333ee	chr1:160328280-160328579(+)$1	299	253	288	39.6089
eee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr8:144916826-144917203(-)$1	377	150	185	39.6058
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd6666	chr6:44201608-44201920(+)$1	312	83	118	39.2614
bb^^^^^^^^^^^^^^^^^^^^^^^^^bb]eeeee	chr11:65764996-65765405(-)$1	409	86	121	39.0827
^^^^^^^^^^^^^^^^^^^^^^^^^^^bbgggggg	chr3:47452099-47452366(+)$1	267	169	204	40.2982
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee333	chr7:149470294-149470564(-)$1	270	86	121	41.1772
dd[bb^^^^^^^^^^^^^^^^^^^bb]ddddbb]c	chr11:6635516-6635830(-)$1	314	198	233	32.4314
:eeeee^^^^^^^^^^^^^^^^^^^^^eeeee:::	chr19:36279558-36279798(+)$1	240	125	160	33.5703
dd!!eeeee^^^^^^^^^^^^^^^^^^eeeee22d	chr11:64533216-64533538(-)$1	322	142	177	32.8984
"dddd^^^^^^^^^^^^^^^^^^^^^^ddddcccd	chr12:54763865-54764161(-)$1	296	39	74	37.1898
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hh	chr10:82278524-82278850(+)$1	326	17	52	40.5846
eee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ee	chr11:65660317-65660590(-)$1	273	82	117	39.8607
eee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:35260171-35260442(+)$1	271	62	97	39.8319
fffffff^^^^^^^^^^^^^^^^^^^ffffff22f	chr10:121355982-121356228(-)$1	246	132	167	32.8336
gg[bba[bb^^^^^^^^^^^^^^^^^^bb]a]bb]	chr19:47219963-47220255(-)$1	292	11	46	32.3157
eee^^^^^^^^^^^^^^^^^^^^^^^^^eeeeedd	chr1:151030645-151030960(-)$1	315	11	46	39.4733
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee333	chr7:149470364-149470668(-)$1	304	190	225	41.1772
!bb^^^^^^^^^^^^^^^^^^^^^^^^^bb22ccc	chr18:34376603-34376903(-)$1	300	132	167	39.0261
eeee!!ccc^^^^^^^^^^^^^^^^^^ccc22eee	chr12:49332407-49332690(-)$1	283	138	173	33.5969
b^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:33421266-33421516(+)$1	250	81	116	40.4685
ggg^^^^^^^^^^^^^^^^^^^^^^^^ggggggg]	chr1:43395781-43396185(-)$1	404	178	213	39.5049
hh!!dddd^^^^^^^^^^^^^^^^^^^dddd22hh	chr6:2960694-2960992(-)$1	298	106	141	33.2748
[eeeee^^^^^^^^^^^^^^^^^^^^eeeeehhhh	chr17:4800960-4801226(+)$1	266	156	191	34.6154
eeee[ccc^^^^^^^^^^^^^^^^^^ccc]eeeee	chr1:26607590-26607847(+)$1	257	182	217	33.2360
b^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:33421217-33421466(+)$1	249	130	165	40.4685
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc22ff	chr19:14203536-14203813(-)$1	277	74	109	40.8785
Eeeeee^^^^^^^^^^^^^^^^^^^^eeeee:ddd	chr22:36863141-36863469(-)$1	328	21	56	33.3863
[eeeee^^^^^^^^^^^^^^^^^^^^eeeee]ggg	chr11:73964685-73964991(+)$1	306	81	116	35.8018
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]ccc	chr1:151030320-151030567(-)$1	247	92	127	41.0271
ddd^^^^^^^^^^^^^^^^^^^^^^^^dddd333e	chr19:41255428-41255834(-)$1	406	270	305	39.7506
:bb[ccc^^^^^^^^^^^^^^^^^^^^^ccc]bbG	chr16:67267639-67267940(-)$1	301	148	183	34.2628
cc[bb^^^^^^^^^^^^^^^^^^^^^bb]ccc22d	chr2:27264208-27264549(+)$1	341	199	234	36.0659
!!dddd^^^^^^^^^^^^^^^^^^^^^dddd]bb:	chrX:131351259-131351567(-)$1	308	8	43	35.4144
ee!!dddd^^^^^^^^^^^^^^^^^^^dddd4444	chr11:204131-204408(-)$1	277	85	120	34.7221
eeeee^^^^^^^^^^^^^^^^^^^^^^eeeeebb:	chr1:27481086-27481383(-)$1	297	193	228	36.5439
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ff	chr17:7311174-7311485(+)$1	311	272	307	40.8277
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeeeddd	chr12:56636210-56636483(-)$1	273	125	160	40.2296
cc!!eeeee^^^^^^^^^^^^^^^^^^eeeee22c	chr2:97504008-97504326(-)$1	318	253	288	33.2060
^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]c	chr1:151039901-151040214(+)$1	313	81	116	40.9444
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd22cc	chrX:53263724-53264071(-)$1	347	61	96	40.6088
gg^^^^^^^^^^^^^^^^^^^^^^^^ggggggg]d	chr19:3465439-3465676(+)$1	237	135	170	38.6988
c[ccc^^^^^^^^^^^^^^^^^^^^cccccc22ee	chr17:47132622-47132943(+)$1	321	123	158	35.4801
ggggggg^^^^^^^^^^^^^^^^^^^^ggggggg:	chr19:3630611-3630898(-)$1	287	83	118	34.4864
ggg^^^^^^^^^^^^^^^^^^^^^^^^gggggggF	chr1:8877453-8877701(-)$1	248	162	197	39.1159
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ff	chr11:203925-204257(-)$1	332	280	315	40.8277
^^^^^^^^^^^^^^^^^^^^^^^^^^^========	chr4:77996802-77997132(-)$1	330	98	133	41.0566
^^^^^^^^^^^^^^^^^^^^^^^^^^^========	chr16:67198390-67198682(+)$1	292	65	100	41.0566
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]eee	chr11:66034455-66034797(+)$1	342	157	192	40.9161
hh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hh	chr11:68659364-68659678(-)$1	314	8	43	39.2985
eeee!!ccc^^^^^^^^^^^^^^^^^^ccc22eee	chr12:49332490-49332786(-)$1	296	234	269	33.5969
^^^^^^^^^^^^^^^^^^^^^^^^^^^iiiiiiii	chr12:6857126-6857383(-)$1	257	134	169	40.6086
====^^^^^^^^^^^^^^^^^^^^^^^========	chr1:46713623-46713885(+)$1	262	128	163	39.3556
e^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee22d	chr11:62379479-62379778(-)$1	299	198	233	40.2973
%bb^^^^^^^^^^^^^^^^^^^^^^^bb333ffff	chr3:9975721-9976032(+)$1	311	216	251	36.9901
====^^^^^^^^^^^^^^^^^^^^^^^========	chr1:46713685-46714003(+)$1	318	66	101	39.3556
b[ffffff^^^^^^^^^^^^^^^^^^^ffffff]b	chr6:32136585-32136819(-)$1	234	100	135	32.7269
gggg^^^^^^^^^^^^^^^^^^^^^^ggggggg]=	chr17:4848114-4848459(+)$1	345	292	327	37.4771
======^^^^^^^^^^^^^^^^^^^^^========	chr11:73965495-73965781(+)$1	286	200	235	37.5183
eeeccc^^^^^^^^^^^^^^^^^^^^^ccc22eee	chr7:127667446-127667732(+)$1	286	114	149	36.9202
c^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]bb]d	chr12:56506597-56506914(+)$1	317	113	148	39.9840
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:7154700-7155070(-)$1	370	53	88	39.8515
^^^^^^^^^^^^^^^^^^^^^^^^^^^ggggggg3	chr7:104753156-104753420(+)$1	264	112	147	40.7175
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd4444	chr12:58019401-58019708(-)$1	307	92	127	40.9939
:ccc!!bb^^^^^^^^^^^^^^^^^^^^bb22ccc	chrX:118753592-118753869(-)$1	277	153	188	33.8260
ggggggg^^^^^^^^^^^^^^^^^^^ggggggg77	chr17:40947016-40947353(+)$1	337	233	268	33.1670
+ggggggg^^^^^^^^^^^^^^^^^^ggggggg00	chr11:309174-309455(+)$1	281	175	210	31.7791
ddd^^^^^^^^^^^^^^^^^^^^^^^^dddd]a]d	chr1:228681680-228681980(+)$1	300	119	154	39.3785

#otherMatches

#Seq PSSM
ACUGUCUCCUUCCCACUGUCCUUUCUCCAGGCCCU	chr1:160328280-160328579(+)$1	299	253	288	39.6089
cccuccauguuaccucccgcaccuccucccugggg	chr8:144916826-144917203(-)$1	377	150	185	39.6058
UCCAUUCUCCCCUGCGCCUCCUCCUCUGUGUUCUC	chr6:44201608-44201920(+)$1	312	83	118	39.2614
uuuuccacccucacccuucauUCUUCUAACCAGCC	chr11:65764996-65765405(-)$1	409	86	121	39.0827
CACAAUCCCCCUACCCCUAUGCCCCUCAGCCUGGG	chr3:47452099-47452366(+)$1	267	169	204	40.2982
CUCCUGAAACCCCCUGCCCCUGCCUCCCCCAGCCC	chr7:149470294-149470564(-)$1	270	86	121	41.1772
GCUUGACUUGACUCCCAACCCUACCAUGCUCCAUC	chr11:6635516-6635830(-)$1	314	198	233	32.4314
AACCAUCUGACAACAUUAAUGAAUAAAAUGGUGAA	chr19:36279558-36279798(+)$1	240	125	160	33.5703
CUCCCAUGGACCCUUCUAACUUUGUCACCAUGAUG	chr11:64533216-64533538(-)$1	322	142	177	32.8984
CGCCGAUCACUCACCCUCUGCUUCACCCGGCCCCC	chr12:54763865-54764161(-)$1	296	39	74	37.1898
CUCACACCAUUUCACUUCCUCUUCCUCUCCUCCAG	chr10:82278524-82278850(+)$1	326	17	52	40.5846
CCACACCCUCCCUAACUCCUUUCACCCCCAGCCUG	chr11:65660317-65660590(-)$1	273	82	117	39.8607
ggcucucccuucaccaacccugucccucaccccug	chr6:35260171-35260442(+)$1	271	62	97	39.8319
CGGUGCCUUUUCCUCUGUCCCCAGCCGGUGCCCAG	chr10:121355982-121356228(-)$1	246	132	167	32.8336
GGCUCCCGACCGAACUUUUCUCCAACUUCUGCGAC	chr19:47219963-47220255(-)$1	292	11	46	32.3157
GGACUUCAUUUUUCCUCAACCCACUCUCUUCUGGC	chr1:151030645-151030960(-)$1	315	11	46	39.4733
CUCCUGAAACCCCCUGCCCCUGCCUCCCCCAGCCC	chr7:149470364-149470668(-)$1	304	190	225	41.1772
GUGAGCACCCCUCCCUCCAACUCCCUACCAGCUCC	chr18:34376603-34376903(-)$1	300	132	167	39.0261
UGACCAAUCCCUAAUUGCUGUCCUGAUGAUGAGUC	chr12:49332407-49332690(-)$1	283	138	173	33.5969
GCCUUAUCUAUCCCCCCUCACUGUCCCCUUUUCUC	chr6:33421266-33421516(+)$1	250	81	116	40.4685
AGGCUUCCCCUUCCCUGUCCCCAAAACCCUCUUGU	chr1:43395781-43396185(-)$1	404	178	213	39.5049
CACCUCCUUCCCUCUCCCAUCUGCUCCAGGAAAUG	chr6:2960694-2960992(-)$1	298	106	141	33.2748
AGGGGGGACCCCGCCAGCCAAAACAUUCCCCCCAU	chr17:4800960-4801226(+)$1	266	156	191	34.6154
AUGUAGUCCCCUCUCCUCCAUCUAAAGGCAACAUU	chr1:26607590-26607847(+)$1	257	182	217	33.2360
GCCUUAUCUAUCCCCCCUCACUGUCCCCUUUUCUC	chr6:33421217-33421466(+)$1	249	130	165	40.4685
Gcugcucccccucauccccuucacccuccugcccc	chr19:14203536-14203813(-)$1	277	74	109	40.8785
UGUUUUGUAAAAAGAAAAAGAAAAAAGAAGCCCAA	chr22:36863141-36863469(-)$1	328	21	56	33.3863
CCAGGGCUCCCCUGCUCCUUUCCCUUCCCUGUACU	chr11:73964685-73964991(+)$1	306	81	116	35.8018
CUUCAUUUUUCCCCAACCCUUACCACCUGCCACCA	chr1:151030320-151030567(-)$1	247	92	127	41.0271
CAGACCCCUGUUCCCCCACCGCUCCCACUGCCUCC	chr19:41255428-41255834(-)$1	406	270	305	39.7506
CUCUGGCUGCCCCUCUUCCCCAUUCAGUGCCUGAC	chr16:67267639-67267940(-)$1	301	148	183	34.2628
UCCACUGUCCAUCCCUCCUAUCAUCUGUAGAGCAG	chr2:27264208-27264549(+)$1	341	199	234	36.0659
UCGCCCUCCUCCCCACGCCCCCUGCUCGGGCUGCA	chrX:131351259-131351567(-)$1	308	8	43	35.4144
GGAUGCCCUCCCUACCCACCUCUCCCUGGGCCUUC	chr11:204131-204408(-)$1	277	85	120	34.7221
AAAGGUCCCAGCCUUCCUUCUUCCUUUCCUUUGCA	chr1:27481086-27481383(-)$1	297	193	228	36.5439
cuccucccuccuuuccccccgccccuccucccucc	chr17:7311174-7311485(+)$1	311	272	307	40.8277
UCCCCACUUCUGUACCCUAUCACCCCUAAAGUUCA	chr12:56636210-56636483(-)$1	273	125	160	40.2296
UGAAUCUUAAGAAGCUCUGCCCUAAACUGAGAACC	chr2:97504008-97504326(-)$1	318	253	288	33.2060
UUCUCUCUCCCAUCACCUUGCCCUCAUUGUCUUCC	chr1:151039901-151040214(+)$1	313	81	116	40.9444
GCAGCCCUCUCUUCCCCCACCUCCCCAGCAGCCCC	chrX:53263724-53264071(-)$1	347	61	96	40.6088
AGCCUCUACCACCCCCAACCCUGCUCUUGGGUACC	chr19:3465439-3465676(+)$1	237	135	170	38.6988
GUGCUUCUCUCCCUUCUCCCCUCCCAGCCAGCUGA	chr17:47132622-47132943(+)$1	321	123	158	35.4801
GGUGACCAAUGCCCACUUCCCCUCCUGGGUCACCU	chr19:3630611-3630898(-)$1	287	83	118	34.4864
GAUUAAAAAAAAAAAAAAAUCACCAUCAUCCUCAG	chr1:8877453-8877701(-)$1	248	162	197	39.1159
ACCCUUCCCCUCCCCUCCUCCUUCCUUCCACACAG	chr11:203925-204257(-)$1	332	280	315	40.8277
CCCUCCCCCCCUUUCACCAUUUCCCCUCGGAGGCG	chr4:77996802-77997132(-)$1	330	98	133	41.0566
accccaccccaccccacuccaccccaccccacccc	chr16:67198390-67198682(+)$1	292	65	100	41.0566
CAGCUCCAUCCCUUAUUUAUUCCUUCCAGCAGGGC	chr11:66034455-66034797(+)$1	342	157	192	40.9161
ugacccaccucgcuccccuucuccuccacccuccg	chr11:68659364-68659678(-)$1	314	8	43	39.2985
UGACCAAUCCCUAAUUGCUGUCCUGAUGAUGAGUC	chr12:49332490-49332786(-)$1	296	234	269	33.5969
UCUUCCCUACACCCUUCUCUGCCUUUAUUUUUUGA	chr12:6857126-6857383(-)$1	257	134	169	40.6086
UGGGACCAUCAUCCCCACUCCACUCCGCCCAGUCU	chr1:46713623-46713885(+)$1	262	128	163	39.3556
CUCUGCUCACCACUCACACUCUCUCCUGUCACUCU	chr11:62379479-62379778(-)$1	299	198	233	40.2973
UGCGCCUUUCCCCACCCAUCCCCACAGCCCCUGCA	chr3:9975721-9976032(+)$1	311	216	251	36.9901
UGGGACCAUCAUCCCCACUCCACUCCGCCCAGUCU	chr1:46713685-46714003(+)$1	318	66	101	39.3556
CUAUGUGGUCUUCUCUACCCCUCUACCCCACAUUG	chr6:32136585-32136819(-)$1	234	100	135	32.7269
UCUCCCUUACCCACACCUAUCCUUUUGAGGGGCUU	chr17:4848114-4848459(+)$1	345	292	327	37.4771
UUUUUUGUUAUUUAUGACCUUGUUUAAAGAAAAUA	chr11:73965495-73965781(+)$1	286	200	235	37.5183
GUUCUGCCCCCACCCCAUCACCACAACCAGUUGAC	chr7:127667446-127667732(+)$1	286	114	149	36.9202
UCCCCUUCCCACCAAACCCCAGACUCUGUGAAGUG	chr12:56506597-56506914(+)$1	317	113	148	39.9840
gcuuucccccccuccccuucccuuuucccuuccuc	chr17:7154700-7155070(-)$1	370	53	88	39.8515
AUCACCAUCCACCACCCCAUCCAUCCACAGGACUC	chr7:104753156-104753420(+)$1	264	112	147	40.7175
UCAUUCCGUCCCCACCCUUUUCUUCUUGAUCUUCC	chr12:58019401-58019708(-)$1	307	92	127	40.9939
UCUGCUACUCUUUCCCACCAGCUCCCCUGUUCCAG	chrX:118753592-118753869(-)$1	277	153	188	33.8260
GGCCCAGUCCCUGCUGUCCCCCUCACCUGGGCUCC	chr17:40947016-40947353(+)$1	337	233	268	33.1670
CACGCUUUUCUACAAUGGCAUUCAAUAAAGUGUAU	chr11:309174-309455(+)$1	281	175	210	31.7791
GGACCCUUCCCACCUGUGCCCGUCCCUUCCUGAAG	chr1:228681680-228681980(+)$1	300	119	154	39.3785

#DB
.(((.......................)))...))	chr1:160328280-160328579(+)$1	1	253	288	39.6089
(((............................))))	chr8:144916826-144917203(-)$1	1	150	185	39.6058
...........................))))....	chr6:44201608-44201920(+)$1	1	83	118	39.2614
((.........................)).)))))	chr11:65764996-65765405(-)$1	1	86	121	39.0827
...........................))))))))	chr3:47452099-47452366(+)$1	1	169	204	40.2982
...........................)))))...	chr7:149470294-149470564(-)$1	1	86	121	41.1772
((.((...................)).)))))).)	chr11:6635516-6635830(-)$1	1	198	233	32.4314
.(((((.....................)))))...	chr19:36279558-36279798(+)$1	1	125	160	33.5703
((..(((((..................)))))..)	chr11:64533216-64533538(-)$1	1	142	177	32.8984
.((((......................)))))))(	chr12:54763865-54764161(-)$1	1	39	74	37.1898
.................................))	chr10:82278524-82278850(+)$1	1	17	52	40.5846
(((..............................))	chr11:65660317-65660590(-)$1	1	82	117	39.8607
(((................................	chr6:35260171-35260442(+)$1	1	62	97	39.8319
(((((((...................))))))..)	chr10:121355982-121356228(-)$1	1	132	167	32.8336
((.(((.((..................)).).)).	chr19:47219963-47220255(-)$1	1	11	46	32.3157
(((.........................)))))))	chr1:151030645-151030960(-)$1	1	11	46	39.4733
...........................)))))...	chr7:149470364-149470668(-)$1	1	190	225	41.1772
.((.........................))..)))	chr18:34376603-34376903(-)$1	1	132	167	39.0261
((((..(((..................)))..)))	chr12:49332407-49332690(-)$1	1	138	173	33.5969
(..................................	chr6:33421266-33421516(+)$1	1	81	116	40.4685
(((........................))))))).	chr1:43395781-43396185(-)$1	1	178	213	39.5049
((..((((...................))))..))	chr6:2960694-2960992(-)$1	1	106	141	33.2748
.(((((....................)))))))))	chr17:4800960-4801226(+)$1	1	156	191	34.6154
((((.(((..................))).)))))	chr1:26607590-26607847(+)$1	1	182	217	33.2360
(..................................	chr6:33421217-33421466(+)$1	1	130	165	40.4685
............................)))..))	chr19:14203536-14203813(-)$1	1	74	109	40.8785
((((((....................))))).(((	chr22:36863141-36863469(-)$1	1	21	56	33.3863
.(((((....................))))).)))	chr11:73964685-73964991(+)$1	1	81	116	35.8018
............................))).)))	chr1:151030320-151030567(-)$1	1	92	127	41.0271
(((........................))))...)	chr19:41255428-41255834(-)$1	1	270	305	39.7506
.((.(((.....................))).))(	chr16:67267639-67267940(-)$1	1	148	183	34.2628
((.((.....................)).)))..)	chr2:27264208-27264549(+)$1	1	199	234	36.0659
..((((.....................)))).)).	chrX:131351259-131351567(-)$1	1	8	43	35.4144
((..((((...................))))....	chr11:204131-204408(-)$1	1	85	120	34.7221
(((((......................))))))).	chr1:27481086-27481383(-)$1	1	193	228	36.5439
.................................))	chr17:7311174-7311485(+)$1	1	272	307	40.8277
...........................)))))(((	chr12:56636210-56636483(-)$1	1	125	160	40.2296
((..(((((..................)))))..)	chr2:97504008-97504326(-)$1	1	253	288	33.2060
............................))))).)	chr1:151039901-151040214(+)$1	1	81	116	40.9444
...........................))))..))	chrX:53263724-53264071(-)$1	1	61	96	40.6088
((........................))))))).)	chr19:3465439-3465676(+)$1	1	135	170	38.6988
(.(((....................))))))..))	chr17:47132622-47132943(+)$1	1	123	158	35.4801
(((((((....................))))))).	chr19:3630611-3630898(-)$1	1	83	118	34.4864
(((........................))))))))	chr1:8877453-8877701(-)$1	1	162	197	39.1159
.................................))	chr11:203925-204257(-)$1	1	280	315	40.8277
...........................))))))))	chr4:77996802-77997132(-)$1	1	98	133	41.0566
...........................))))))))	chr16:67198390-67198682(+)$1	1	65	100	41.0566
............................))).)))	chr11:66034455-66034797(+)$1	1	157	192	40.9161
((...............................))	chr11:68659364-68659678(-)$1	1	8	43	39.2985
((((..(((..................)))..)))	chr12:49332490-49332786(-)$1	1	234	269	33.5969
...........................))))))))	chr12:6857126-6857383(-)$1	1	134	169	40.6086
((((.......................))))))))	chr1:46713623-46713885(+)$1	1	128	163	39.3556
(..........................)))))..)	chr11:62379479-62379778(-)$1	1	198	233	40.2973
.((.......................))...))))	chr3:9975721-9976032(+)$1	1	216	251	36.9901
((((.......................))))))))	chr1:46713685-46714003(+)$1	1	66	101	39.3556
(.((((((...................)))))).)	chr6:32136585-32136819(-)$1	1	100	135	32.7269
((((......................))))))).)	chr17:4848114-4848459(+)$1	1	292	327	37.4771
((((((.....................))))))))	chr11:73965495-73965781(+)$1	1	200	235	37.5183
((((((.....................)))..)))	chr7:127667446-127667732(+)$1	1	114	149	36.9202
(..........................))).)).)	chr12:56506597-56506914(+)$1	1	113	148	39.9840
(((................................	chr17:7154700-7155070(-)$1	1	53	88	39.8515
...........................))))))).	chr7:104753156-104753420(+)$1	1	112	147	40.7175
...........................))))....	chr12:58019401-58019708(-)$1	1	92	127	40.9939
.(((..((....................))..)))	chrX:118753592-118753869(-)$1	1	153	188	33.8260
(((((((...................)))))))..	chr17:40947016-40947353(+)$1	1	233	268	33.1670
.(((((((..................)))))))..	chr11:309174-309455(+)$1	1	175	210	31.7791
(((........................)))).).)	chr1:228681680-228681980(+)$1	1	119	154	39.3785

#PSSM
^ : 0.26	e : 0.16	g : 0.10	c : 0.07	b : 0.05	d : 0.05	: : 0.04	= : 0.04	! : 0.02	h : 0.02	[ : 0.02	# : 0.01	" : 0.01	f : 0.01	E : 0.01	% : 0.01	+ : 0.01	
^ : 0.32	e : 0.20	g : 0.11	c : 0.07	d : 0.07	b : 0.05	= : 0.04	h : 0.02	[ : 0.02	f : 0.01	! : 0.01	
^ : 0.37	e : 0.19	g : 0.08	c : 0.05	! : 0.05	d : 0.05	[ : 0.04	b : 0.04	= : 0.04	f : 0.02	
^ : 0.53	e : 0.11	c : 0.05	! : 0.05	g : 0.05	b : 0.04	= : 0.04	d : 0.02	f : 0.02	[ : 0.01	
^ : 0.59	e : 0.10	d : 0.05	b : 0.04	! : 0.04	c : 0.04	g : 0.04	f : 0.02	[ : 0.01	= : 0.01	
^ : 0.67	e : 0.08	! : 0.04	d : 0.04	c : 0.04	g : 0.04	f : 0.02	a : 0.01	= : 0.01	
^ : 0.77	c : 0.05	g : 0.04	e : 0.02	f : 0.02	d : 0.02	[ : 0.01	b : 0.01	
^ : 0.83	c : 0.04	e : 0.02	b : 0.02	d : 0.02	f : 0.01	g : 0.01	
^ : 0.92	e : 0.02	c : 0.02	b : 0.01	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.98	b : 0.01	
^ : 0.97	b : 0.01	c : 0.01	
^ : 0.80	g : 0.05	e : 0.04	c : 0.02	b : 0.02	] : 0.01	f : 0.01	
^ : 0.26	e : 0.16	d : 0.14	g : 0.11	c : 0.10	b : 0.07	= : 0.07	f : 0.02	i : 0.01	
e : 0.19	c : 0.16	^ : 0.14	d : 0.14	g : 0.11	b : 0.07	= : 0.07	f : 0.02	] : 0.01	i : 0.01	3 : 0.01	
e : 0.19	c : 0.16	^ : 0.14	d : 0.14	g : 0.13	= : 0.07	] : 0.04	f : 0.02	b : 0.02	i : 0.01	3 : 0.01	
e : 0.22	^ : 0.14	d : 0.14	g : 0.13	c : 0.08	2 : 0.07	= : 0.07	3 : 0.02	f : 0.02	a : 0.01	i : 0.01	] : 0.01	
e : 0.19	g : 0.13	^ : 0.13	2 : 0.13	] : 0.10	= : 0.07	f : 0.04	3 : 0.02	b : 0.02	c : 0.02	4 : 0.02	6 : 0.01	h : 0.01	: : 0.01	i : 0.01	
g : 0.14	e : 0.13	2 : 0.13	^ : 0.13	b : 0.08	= : 0.07	3 : 0.05	c : 0.05	d : 0.02	4 : 0.02	f : 0.02	6 : 0.01	: : 0.01	h : 0.01	i : 0.01	a : 0.01	
e : 0.14	] : 0.10	g : 0.08	2 : 0.07	c : 0.07	= : 0.07	h : 0.05	^ : 0.05	b : 0.05	f : 0.05	3 : 0.04	d : 0.04	4 : 0.02	6 : 0.01	: : 0.01	i : 0.01	7 : 0.01	0 : 0.01	
e : 0.16	d : 0.14	c : 0.10	= : 0.08	f : 0.07	: : 0.05	h : 0.05	^ : 0.05	3 : 0.04	g : 0.02	] : 0.02	4 : 0.02	6 : 0.01	G : 0.01	F : 0.01	i : 0.01	b : 0.01	7 : 0.01	0 : 0.01	

#score	2524.5460303633336
#seq	67
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_CDS_m3_run1.txt

#BEAR
===========rrrrrrrrr===========:D	chr11:62290491-62290723(-)$1	232	191	224	13.8265
c[ccc[ccc[bbpppppppbb]cccccc]ccc]	chr1:27022967-27023205(+)$1	238	182	215	14.5963
:eeeeegggggggpppppppggggggg]eeeee	chr11:62293392-62293647(-)$1	255	222	255	12.1664
gggccc[cccrrrrrrrrrccc]ccc333gggg	chr17:17067597-17067865(+)$1	268	199	232	14.6610
:dddd[ffffffpppppppffffff22dddddd	chr11:62298247-62298515(-)$1	268	171	204	12.0571
bb!!hhhhhhhhppppppphhhhhhhh]bbccc	chr9:138378812-138379086(+)$1	274	69	102	12.0386
============qqqqqqqq============:	chr14:105196101-105196397(+)$1	296	18	51	11.5475
ee[a[ccc[bbqqqqqqqqbbccc]a333eeee	chr16:69153681-69153924(-)$1	243	57	90	12.0535
+==========qqqqqqqq==========4444	chr22:21799977-21800224(+)$1	247	80	113	11.7525
ccc[cccccc[aqqqqqqqqa]ccc]ccc]ccc	chr2:109381328-109381571(+)$1	243	142	175	10.8518
:ccc!!ccccccpppppppccc]ccc22ccc:D	chr17:17068556-17068843(+)$1	287	9	42	13.6589
gggggccc!!bbpppppppbb22cccffffff!	chr17:5418126-5418430(-)$1	304	127	160	13.5250
::cccgggggggpppppppggggggg4444ccc	chr20:34092243-34092495(+)$1	252	21	54	13.4032
cc####ddddrrrrrrrrrddddccccccdddd	chr11:62287329-62287587(-)$1	258	45	78	12.4496
b[cccffffffrrrrrrrrrffffff22cccbb	chr10:71136588-71136797(+)$1	209	85	118	12.9952
eeeee!!eeeeeqqqqqqqqeeeee333eeeee	chr8:144942707-144942938(-)$1	231	125	158	11.1223
"""eeeee[cccpppppppccc]eeeee]eeee	chr1:54703774-54704071(-)$1	297	141	174	14.4988
a[==========ppppppp==========]a:d	chr11:62294479-62294747(-)$1	268	117	150	15.5962
d!!gggggggrrrrrrrrrggggggg333dddd	chr1:144931060-144931336(-)$1	276	223	256	14.6315
cc[bb[bb[cccpppppppcccbb]bb]ccc:=	chr19:58991274-58991529(-)$1	255	172	205	13.0686
"eeeeea!!cccqqqqqqqqccc22a]eeeee3	chr8:94748210-94748473(-)$1	263	159	192	10.7847
###ccc!!bbrrrrrrrrrbb22ccc333a]cc	chr11:71725473-71725733(-)$1	260	102	135	13.6888
e[a[a!!eeeeerrrrrrrrreeeee22a]a33	chr8:144672023-144672355(-)$1	332	173	206	14.4805
ee"""ffffffrrrrrrrrrffffff22eeeee	chr9:138377306-138377552(+)$1	246	140	173	14.1458
!a!!dddd[cccpppppppcccdddd22a7777	chr9:134350850-134351119(+)$1	269	57	90	12.8234
ggg!!ccc[bbqqqqqqqqbb]ccc333ggggg	chr11:71724173-71724432(-)$1	259	160	193	11.8027
!dddd!!eeeeerrrrrrrrreeeee22dddd4	chr11:62298345-62298569(-)$1	224	161	194	13.2055
ddd[hhhhhhhhppppppphhhhhhhh]dddd3	chr19:5111266-5111548(+)$1	282	203	236	12.2521
eeeee"""cccqqqqqqqqccc333eeeeeddd	chr22:23603441-23603660(+)$1	219	23	56	10.6292
Eggggggg[cccpppppppccc]ggggggg:::	chr16:89788065-89788322(+)$1	257	195	228	12.2368
iiiiiiiiicccqqqqqqqqccc4444iiiiii	chr8:144671309-144671573(-)$1	264	25	58	11.5514
b[bbhhhhhhhhppppppphhhhhhhh]bb333	chr11:61897227-61897497(+)$1	270	146	179	11.8487
eee!!gggggggpppppppggggggg22eeeee	chr12:6696898-6697194(-)$1	296	30	63	16.0860
ff"""ddddcccrrrrrrrrrccc]dddd333f	chr8:144994064-144994289(-)$1	225	4	37	13.0704
b[ggggggg[bbrrrrrrrrrbb]ggggggg]b	chr19:50354172-50354438(-)$1	266	103	136	13.1265
iiiiiiieeeeepppppppeeeeegggggggmm	chr3:49050532-49050811(+)$1	279	122	155	13.2675
eee[ccc!!bbrrrrrrrrrbb22ccc]eeeee	chr8:37729093-37729397(-)$1	304	23	56	14.0087
eee!!bb!!bbrrrrrrrrrbb22bb22eeeee	chr11:62291021-62291280(-)$1	259	191	224	13.9104
eeee!!bb"""aqqqqqqqqa333bb22eeeee	chr16:87735206-87735481(-)$1	275	78	111	11.1919
b[bb[gggggggpppppppggggggg]bb]bb]	chr22:21799745-21800020(+)$1	275	39	72	13.6600
==========bbpppppppbb]===========	chr3:13461586-13461874(-)$1	288	173	206	15.9691
bb[bbeeeeearrrrrrrrra]eeeee]bb]bb	chr11:71726062-71726349(-)$1	287	208	241	11.8357
ddd####ddddrrrrrrrrrddddddddccc]b	chr11:62293882-62294103(-)$1	221	134	167	12.0494
d[ffffff[cccpppppppccc]ffffff]ddd	chr8:144942805-144943144(-)$1	339	114	147	13.8978
eee!!bb!!bbrrrrrrrrrbb22bb22eeeee	chr11:62299841-62300082(-)$1	241	71	104	13.9104
eee####eeeeerrrrrrrrreeeee333eeee	chr1:144931228-144931488(-)$1	260	61	94	14.5275
eeee"""eeeeepppppppeeeee]eeeee333	chr9:133738238-133738512(+)$1	274	176	209	14.5097
f!!a"""bb[bbpppppppbb]bb]a22fffff	chr22:50278153-50278438(+)$1	285	223	256	14.2897
dddd[bbeeeeepppppppeeeee]bb]dddd2	chr14:102452439-102452736(+)$1	297	60	93	12.7436
ee[ffffff[bbpppppppbb]ffffff333ee	chr11:61897880-61898135(+)$1	255	3	36	13.6136
eeee[bb[ddddpppppppddddbb]eeeeecc	chr21:34924677-34924938(+)$1	261	23	56	12.8343
hh"""ddddcccrrrrrrrrrccc]dddd333h	chr8:144994114-144994365(-)$1	251	80	113	12.7918
ffff####ddddpppppppdddd4444ffffff	chr13:108518771-108519037(-)$1	266	210	243	12.7906

#otherMatches

#Seq PSSM
UGGACAUUAAUGCUCCAGAUGUUGAUGUUCAAG	chr11:62290491-62290723(-)$1	232	191	224	13.8265
ggcggagccggcagcggcggcggGCCCGGCGCG	chr1:27022967-27023205(+)$1	238	182	215	14.5963
AAGUUUAAGAUGCCAGAGAUGCAUUUUAAGACU	chr11:62293392-62293647(-)$1	255	222	255	12.1664
CCUGCUGCUGGAGAAGACGCAGGAGCUACGGGG	chr17:17067597-17067865(+)$1	268	199	232	14.6610
AGUUUAAGAUGCCUGAGAUGCAUUUCAAGACCC	chr11:62298247-62298515(-)$1	268	171	204	12.0571
GAAGUUUUUGGCGGAAAAGGCCAAGGAGUCAGU	chr9:138378812-138379086(+)$1	274	69	102	12.0386
gucggcgucguggggaggagcguggcgucggcg	chr14:105196101-105196397(+)$1	296	18	51	11.5475
UAUGUCCAACCCAAGGGCAGGUGGUCUCCUGGG	chr16:69153681-69153924(-)$1	243	57	90	12.0535
AGUGCCUCUUAUUCUGAGCUGGGGGGCACCCCU	chr22:21799977-21800224(+)$1	247	80	113	11.7525
UGAGGGGAGCUCUACAAAAUGUGCUGCUUGUCA	chr2:109381328-109381571(+)$1	243	142	175	10.8518
AGUGAAUCUCCAAAGGACAUGGAAGAGCCACGG	chr17:17068556-17068843(+)$1	287	9	42	13.6589
UUGUCUUGGACAAACUGCAUGGACAGGUGCUGA	chr17:5418126-5418430(-)$1	304	127	160	13.5250
AAGGUGAGAUCCAGGACCAGGAUCUCCGAUACC	chr20:34092243-34092495(+)$1	252	21	54	13.4032
GUGAAAAUGCCCAAAUUCAGCAUGCCUGGCUUC	chr11:62287329-62287587(-)$1	258	45	78	12.4496
GUGCCUUUCUCCACAGGUUUGAGAAGAUGGUCA	chr10:71136588-71136797(+)$1	209	85	118	12.9952
CAGCUGAUCAGCAGGAAGACGCUGGACGAGCUG	chr8:144942707-144942938(-)$1	231	125	158	11.1223
UUUUGUUGGCUCCGUUCCUGAGGUGACACCCGG	chr1:54703774-54704071(-)$1	297	141	174	14.4988
UGGAUGUCAGUGGGCCAGACAUUGACAUUGAGG	chr11:62294479-62294747(-)$1	268	117	150	15.5962
CUAGCAGGUGGUCGACCAGCAUUUGCACUGAAG	chr1:144931060-144931336(-)$1	276	223	256	14.6315
CCCGUGAGCAGCAUCCCCAGCUCUGACUGGGCC	chr19:58991274-58991529(-)$1	255	172	205	13.0686
UUUAUUGAGUCUGUUAAGGAAGAAGCAAGUAAU	chr8:94748210-94748473(-)$1	263	159	192	10.7847
AGGCAGAGCAGAUGGGCAAUGAGCUGGAACGGC	chr11:71725473-71725733(-)$1	260	102	135	13.6888
GAGCGGCGCUUCUACGAACACGAGGCCACACAG	chr8:144672023-144672355(-)$1	332	173	206	14.4805
GCGACGAUGGCAUUGAGGAGGCCAUCCAGCUGU	chr9:138377306-138377552(+)$1	246	140	173	14.1458
CCAGUGAGACCCAUAGCGAGGGCUCAGAGUAUG	chr9:134350850-134351119(+)$1	269	57	90	12.8234
UGCGGGCAGAGAAGGCCAGCUAUGCAGAGCAGC	chr11:71724173-71724432(-)$1	259	160	193	11.8027
AAGGUGGACAUCGAAGCCCCAGAUGUGAGCCUC	chr11:62298345-62298569(-)$1	224	161	194	13.2055
CUCUUGGCUUCUGACCACAAGAGGCCAUGGGGA	chr19:5111266-5111548(+)$1	282	203	236	12.2521
CUGUCUACUGCCAUACAAUGCACCUGACGGAUG	chr22:23603441-23603660(+)$1	219	23	56	10.6292
cgcggcccgggcguggcggguuggggucgcggc	chr16:89788065-89788322(+)$1	257	195	228	12.2368
AGAAGCCCCGGUAUGAUGCAGCCGAGAGGGGCU	chr8:144671309-144671573(-)$1	264	25	58	11.5514
CCGUGCUGCGGCUGCAGCUGCCGCGGCUACCAU	chr11:61897227-61897497(+)$1	270	146	179	11.8487
UGGCACCAGGAAAAUACAAUUUCUGGCUUUAUU	chr12:6696898-6697194(-)$1	296	30	63	16.0860
AAAAGACCCCGGUUGAGGUCCCCGUGGGUGGCU	chr8:144994064-144994289(-)$1	225	4	37	13.0704
cggggcccgggcgggAGCGGAGUGUGGGCUCGG	chr19:50354172-50354438(-)$1	266	103	136	13.1265
UGCCCUCUCUGCACGGGAAGCAGGGUGUGACCU	chr3:49050532-49050811(+)$1	279	122	155	13.2675
UGAAGAUGAUGGAGAGACAGCAAAGUCGUCAAC	chr8:37729093-37729397(-)$1	304	23	56	14.0087
GAAGAUGCCCAAAGUGAAAAUGCCCAAGUUCAG	chr11:62291021-62291280(-)$1	259	191	224	13.9104
CACAGACGGGAGAAGGAUGGCGGACGGGUGUGC	chr16:87735206-87735481(-)$1	275	78	111	11.1919
CUCUUUCUUGGUGGCUCUAACCAGGAUAGCGUG	chr22:21799745-21800020(+)$1	275	39	72	13.6600
UGCUGCUGACGCUGUCGGUGCUGUUGGCGGCGG	chr3:13461586-13461874(-)$1	288	173	206	15.9691
GUGAGCAGCUCGUCAAAGAAGUAGCUGCCUGGC	chr11:71726062-71726349(-)$1	287	208	241	11.8357
GGUGAAAAUGCCAAAGUUCAGCAUGCCUGGCUU	chr11:62293882-62294103(-)$1	221	134	167	12.0494
GUGUAGCGUGUCACUCUGGGACCUGCUGCUCUC	chr8:144942805-144943144(-)$1	339	114	147	13.8978
GAAAAUGCCCAAGAUGAAAAUGCCCACGUUCAG	chr11:62299841-62300082(-)$1	241	71	104	13.9104
CAGUAUGUAUCGGAAGAAUAACGAUGACUCUGG	chr1:144931228-144931488(-)$1	260	61	94	14.5275
CCUUGAAGGUAGGCUGGGACUGCCGGGGGUGCC	chr9:133738238-133738512(+)$1	274	176	209	14.5097
CCACUCUGCUGCCUUCCUUGCUGCCGCCGGAGG	chr22:50278153-50278438(+)$1	285	223	256	14.2897
GUCUAUCAUCUGGGCUAAACAGAUCGACAGGCA	chr14:102452439-102452736(+)$1	297	60	93	12.7436
CUCUCGCACGGACUCUCAAUCGGUGCGGCACAG	chr11:61897880-61898135(+)$1	255	3	36	13.6136
AGCGCUCUAUGAUGUCAGCUUAUGAACGCUCCA	chr21:34924677-34924938(+)$1	261	23	56	12.8343
AAAAGACCCCGGUUGAGGUCCCCGUGGGUGGCU	chr8:144994114-144994365(-)$1	251	80	113	12.7918
CUGUCUCUGGCAUCUCUCUUGUUUUUCACAGUC	chr13:108518771-108519037(-)$1	266	210	243	12.7906

#DB
(((((((((((.........))))))))))).)	chr11:62290491-62290723(-)$1	1	191	224	13.8265
(.(((.(((.((.......)).)))))).))).	chr1:27022967-27023205(+)$1	1	182	215	14.5963
.((((((((((((.......))))))).)))))	chr11:62293392-62293647(-)$1	1	222	255	12.1664
((((((.(((.........))).)))...))))	chr17:17067597-17067865(+)$1	1	199	232	14.6610
.((((.((((((.......))))))..))))((	chr11:62298247-62298515(-)$1	1	171	204	12.0571
((..((((((((.......)))))))).)))))	chr9:138378812-138379086(+)$1	1	69	102	12.0386
((((((((((((........)))))))))))).	chr14:105196101-105196397(+)$1	1	18	51	11.5475
((.(.(((.((........))))).)...))))	chr16:69153681-69153924(-)$1	1	57	90	12.0535
.((((((((((........))))))))))....	chr22:21799977-21800224(+)$1	1	80	113	11.7525
(((.((((((.(........).))).))).)))	chr2:109381328-109381571(+)$1	1	142	175	10.8518
.(((..((((((.......))).)))..))).(	chr17:17068556-17068843(+)$1	1	9	42	13.6589
)))))(((..((.......))..)))((((((.	chr17:5418126-5418430(-)$1	1	127	160	13.5250
..((((((((((.......)))))))....)))	chr20:34092243-34092495(+)$1	1	21	54	13.4032
((....((((.........))))))))))((((	chr11:62287329-62287587(-)$1	1	45	78	12.4496
(.(((((((((.........))))))..)))))	chr10:71136588-71136797(+)$1	1	85	118	12.9952
(((((..(((((........)))))...)))))	chr8:144942707-144942938(-)$1	1	125	158	11.1223
...(((((.(((.......))).))))).))))	chr1:54703774-54704071(-)$1	1	141	174	14.4988
(.((((((((((.......)))))))))).).(	chr11:62294479-62294747(-)$1	1	117	150	15.5962
(..(((((((.........)))))))...))))	chr1:144931060-144931336(-)$1	1	223	256	14.6315
((.((.((.(((.......))))).)).))).(	chr19:58991274-58991529(-)$1	1	172	205	13.0686
.((((((..(((........)))..).))))).	chr8:94748210-94748473(-)$1	1	159	192	10.7847
...(((..((.........))..)))...).))	chr11:71725473-71725733(-)$1	1	102	135	13.6888
(.(.(..(((((.........)))))..).)..	chr8:144672023-144672355(-)$1	1	173	206	14.4805
((...((((((.........))))))..)))))	chr9:138377306-138377552(+)$1	1	140	173	14.1458
.(..((((.(((.......)))))))..)....	chr9:134350850-134351119(+)$1	1	57	90	12.8234
(((..(((.((........)).)))...)))))	chr11:71724173-71724432(-)$1	1	160	193	11.8027
.((((..(((((.........)))))..)))).	chr11:62298345-62298569(-)$1	1	161	194	13.2055
(((.((((((((.......)))))))).)))).	chr19:5111266-5111548(+)$1	1	203	236	12.2521
(((((...(((........)))...))))))))	chr22:23603441-23603660(+)$1	1	23	56	10.6292
)(((((((.(((.......))).)))))))...	chr16:89788065-89788322(+)$1	1	195	228	12.2368
((((((((((((........)))....))))))	chr8:144671309-144671573(-)$1	1	25	58	11.5514
(.((((((((((.......)))))))).))...	chr11:61897227-61897497(+)$1	1	146	179	11.8487
(((..(((((((.......)))))))..)))))	chr12:6696898-6697194(-)$1	1	30	63	16.0860
((...(((((((.........))).))))...)	chr8:144994064-144994289(-)$1	1	4	37	13.0704
(.(((((((.((.........)).))))))).)	chr19:50354172-50354438(-)$1	1	103	136	13.1265
)))))))(((((.......)))))(((((((..	chr3:49050532-49050811(+)$1	1	122	155	13.2675
(((.(((..((.........))..))).)))))	chr8:37729093-37729397(-)$1	1	23	56	14.0087
(((..((..((.........))..))..)))))	chr11:62291021-62291280(-)$1	1	191	224	13.9104
((((..((...(........)...))..)))))	chr16:87735206-87735481(-)$1	1	78	111	11.1919
(.((.(((((((.......))))))).)).)).	chr22:21799745-21800020(+)$1	1	39	72	13.6600
((((((((((((.......)).)))))))))))	chr3:13461586-13461874(-)$1	1	173	206	15.9691
((.((((((((.........).))))).)).))	chr11:71726062-71726349(-)$1	1	208	241	11.8357
(((....((((.........))))))))))).)	chr11:62293882-62294103(-)$1	1	134	167	12.0494
(.((((((.(((.......))).)))))).)))	chr8:144942805-144943144(-)$1	1	114	147	13.8978
(((..((..((.........))..))..)))))	chr11:62299841-62300082(-)$1	1	71	104	13.9104
(((....(((((.........)))))...))))	chr1:144931228-144931488(-)$1	1	61	94	14.5275
((((...(((((.......))))).)))))...	chr9:133738238-133738512(+)$1	1	176	209	14.5097
(..(...((.((.......)).)).)..)))))	chr22:50278153-50278438(+)$1	1	223	256	14.2897
((((.(((((((.......))))).)).)))).	chr14:102452439-102452736(+)$1	1	60	93	12.7436
((.((((((.((.......)).))))))...))	chr11:61897880-61898135(+)$1	1	3	36	13.6136
((((.((.((((.......)))))).)))))((	chr21:34924677-34924938(+)$1	1	23	56	12.8343
((...(((((((.........))).))))...)	chr8:144994114-144994365(-)$1	1	80	113	12.7918
((((....((((.......))))....))))))	chr13:108518771-108519037(-)$1	1	210	243	12.7906

#PSSM
e : 0.26	b : 0.11	d : 0.09	c : 0.07	: : 0.07	= : 0.05	g : 0.05	f : 0.05	" : 0.03	! : 0.03	i : 0.03	+ : 0.01	a : 0.01	# : 0.01	E : 0.01	h : 0.01	
e : 0.28	[ : 0.15	d : 0.09	= : 0.07	g : 0.07	c : 0.07	b : 0.03	! : 0.03	i : 0.03	f : 0.03	: : 0.01	" : 0.01	# : 0.01	a : 0.01	h : 0.01	
e : 0.22	= : 0.09	c : 0.09	g : 0.09	d : 0.09	! : 0.07	[ : 0.07	" : 0.07	# : 0.03	i : 0.03	b : 0.03	f : 0.03	a : 0.01	
e : 0.15	c : 0.11	! : 0.11	= : 0.09	[ : 0.07	g : 0.07	b : 0.07	d : 0.05	# : 0.05	" : 0.05	f : 0.05	a : 0.03	i : 0.03	
c : 0.13	! : 0.11	= : 0.09	e : 0.09	" : 0.09	[ : 0.07	g : 0.07	# : 0.07	d : 0.05	h : 0.05	b : 0.03	i : 0.03	f : 0.03	a : 0.01	
c : 0.13	g : 0.11	= : 0.09	! : 0.09	e : 0.07	# : 0.07	f : 0.07	b : 0.07	[ : 0.05	h : 0.05	d : 0.05	" : 0.05	i : 0.03	
c : 0.13	g : 0.13	b : 0.11	= : 0.09	f : 0.09	d : 0.07	! : 0.07	h : 0.05	" : 0.05	# : 0.05	e : 0.03	i : 0.03	[ : 0.01	a : 0.01	
e : 0.16	c : 0.13	g : 0.13	= : 0.09	f : 0.09	d : 0.09	! : 0.09	h : 0.05	b : 0.05	" : 0.01	i : 0.01	[ : 0.01	# : 0.01	
e : 0.15	[ : 0.13	g : 0.11	d : 0.11	= : 0.09	c : 0.09	! : 0.09	f : 0.07	h : 0.05	b : 0.03	i : 0.01	" : 0.01	
c : 0.24	e : 0.15	b : 0.11	= : 0.09	g : 0.09	[ : 0.07	d : 0.07	f : 0.05	h : 0.05	! : 0.01	" : 0.01	
b : 0.20	c : 0.20	e : 0.13	= : 0.07	g : 0.07	r : 0.07	f : 0.05	h : 0.05	d : 0.05	[ : 0.01	" : 0.01	a : 0.01	
r : 0.22	c : 0.18	e : 0.13	b : 0.11	g : 0.07	q : 0.07	h : 0.05	= : 0.03	a : 0.03	d : 0.03	f : 0.01	
p : 0.45	r : 0.33	q : 0.18	g : 0.01	
p : 0.47	r : 0.33	q : 0.18	
p : 0.47	r : 0.33	q : 0.18	
p : 0.47	r : 0.33	q : 0.18	
p : 0.47	r : 0.33	q : 0.18	
p : 0.47	r : 0.33	q : 0.18	
p : 0.47	r : 0.33	q : 0.18	
r : 0.26	b : 0.15	c : 0.15	q : 0.11	g : 0.07	h : 0.05	d : 0.05	e : 0.05	= : 0.03	p : 0.01	f : 0.01	
b : 0.20	c : 0.18	r : 0.11	g : 0.09	= : 0.07	d : 0.07	e : 0.07	f : 0.05	h : 0.05	a : 0.05	
c : 0.24	] : 0.13	e : 0.13	g : 0.09	= : 0.07	d : 0.07	b : 0.07	f : 0.05	h : 0.05	2 : 0.03	3 : 0.01	
c : 0.15	e : 0.15	= : 0.09	g : 0.09	] : 0.09	2 : 0.09	d : 0.09	f : 0.07	h : 0.05	b : 0.05	3 : 0.03	
c : 0.20	e : 0.16	g : 0.11	= : 0.09	f : 0.09	2 : 0.07	h : 0.05	b : 0.05	d : 0.03	3 : 0.03	4 : 0.03	] : 0.01	
c : 0.16	g : 0.15	] : 0.13	e : 0.11	= : 0.09	f : 0.09	b : 0.07	h : 0.05	d : 0.03	4 : 0.03	2 : 0.01	3 : 0.01	
g : 0.15	c : 0.13	e : 0.13	= : 0.09	b : 0.09	f : 0.07	d : 0.07	h : 0.05	a : 0.05	] : 0.03	3 : 0.03	4 : 0.03	2 : 0.01	
2 : 0.22	3 : 0.13	= : 0.09	e : 0.09	c : 0.07	g : 0.07	h : 0.05	f : 0.05	4 : 0.05	d : 0.05	b : 0.03	] : 0.03	
2 : 0.20	] : 0.15	3 : 0.13	= : 0.09	e : 0.09	d : 0.07	f : 0.07	c : 0.05	g : 0.05	4 : 0.01	i : 0.01	b : 0.01	
e : 0.22	3 : 0.11	d : 0.11	c : 0.11	= : 0.09	b : 0.07	f : 0.07	g : 0.07	] : 0.03	a : 0.03	4 : 0.01	i : 0.01	
e : 0.28	d : 0.11	c : 0.09	g : 0.09	] : 0.09	= : 0.05	b : 0.05	f : 0.05	3 : 0.05	4 : 0.03	a : 0.01	7 : 0.01	i : 0.01	
e : 0.24	c : 0.15	d : 0.15	3 : 0.09	g : 0.07	= : 0.05	f : 0.05	a : 0.03	] : 0.03	4 : 0.01	7 : 0.01	: : 0.01	i : 0.01	b : 0.01	
e : 0.24	d : 0.15	c : 0.11	: : 0.09	3 : 0.09	f : 0.05	b : 0.05	g : 0.03	= : 0.03	] : 0.03	4 : 0.01	7 : 0.01	i : 0.01	m : 0.01	
e : 0.22	d : 0.11	c : 0.09	3 : 0.09	b : 0.07	f : 0.05	D : 0.03	] : 0.03	g : 0.03	: : 0.03	4 : 0.03	= : 0.03	! : 0.01	7 : 0.01	i : 0.01	m : 0.01	2 : 0.01	h : 0.01	

#score	694.0374696320955
#seq	53
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_transcript_m2_run2.txt

#BEAR
ffffffwwwwwwwwwwwwwwffffff:FFF	chr2:27534615-27534889(-)$1	274	100	130	20.3845
$$$$ddddtttttttttttdddd333ccce	chr8:22106065-22106337(+)$1	272	226	256	22.5250
iiiiiiiwwwwwwwwwwwwwwiiiiiiiii	chr1:55559441-55559707(-)$1	266	12	42	24.9506
###eeeeeuuuuuuuuuuuueeeee22ccc	chr2:61709929-61710172(-)$1	243	8	38	24.3240
iiiiiiiiitttttttttttiiiiiiiiiJ	chr3:176750549-176750871(-)$1	322	226	256	24.2032
e[ffffffwwwwwwwwwwwwwwffffff]e	chr3:23960041-23960290(+)$1	249	73	103	23.2240
i[ccccccuuuuuuuuuuuuccc]ccciii	chr20:34214325-34214588(-)$1	263	80	110	26.2273
[ffffffyyyyyyyyyyyyyyyyffffff]	chr10:28822869-28823157(+)$1	288	192	222	22.2151
fccc!!bbvvvvvvvvvvvvvbb22ccc33	chr3:141682374-141682712(-)$1	338	98	128	24.3773
========uuuuuuuuuuuu==========	chr2:55209466-55209727(-)$1	261	100	130	27.0425
FFFFdddduuuuuuuuuuuudddd:ggggg	chr11:10777219-10777497(+)$1	278	191	221	21.8750
=======wwwwwwwwwwwwww=========	chr17:7480972-7481212(+)$1	240	195	225	25.3050
eeee[cccvvvvvvvvvvvvvccceeeeec	chr16:56487227-56487629(+)$1	402	268	298	24.9080
$$$eeeeeuuuuuuuuuuuueeeeeccc::	chr12:102514113-102514400(+)$1	287	242	272	22.2759
===!!ddddtttttttttttdddd======	chr1:52280027-52280321(-)$1	294	254	284	24.9196
c[ccc[bbuuuuuuuuuuuubb]cccccc3	chr1:97278470-97278733(+)$1	263	125	155	24.8478
fff[cccvvvvvvvvvvvvvccc]ffffff	chr2:106780973-106781252(-)$1	279	242	272	24.9702
eeffffffvvvvvvvvvvvvvffffff:ee	chr7:87516696-87516938(+)$1	242	122	152	23.4325
gggggggvvvvvvvvvvvvvgggggggeee	chr18:47812168-47812456(-)$1	288	84	114	25.3921
=========ttttttttttt==========	chr21:17163877-17164160(+)$1	283	106	136	26.2496
c!!eeeeevvvvvvvvvvvvveeeeeccc:	chr2:177134386-177134631(+)$1	245	156	186	23.8273
!!eeeeevvvvvvvvvvvvveeeee333dd	chr17:65211735-65212073(-)$1	338	213	243	24.3752
fffccc[auuuuuuuuuuuua]ccc]ffff	chr1:36070623-36070899(-)$1	276	201	231	24.9012
gggg[cccuuuuuuuuuuuuccc]gggggg	chr19:10286073-10286315(-)$1	242	102	132	26.6671
b[ffffffuuuuuuuuuuuuffffff333b	chr4:128804395-128804662(+)$1	267	151	181	24.7344
##bb[ccctttttttttttccc]bbiiiii	chr21:37709201-37709542(+)$1	341	115	145	23.8656
eeeee[ccctttttttttttccc]eeeee:	chr8:144657444-144657686(-)$1	242	112	142	23.8633
cccfffffftttttttttttffffff8888	chr1:11083265-11083497(+)$1	232	10	40	21.8545
eeeeyyyyyyyyyyyyyyyyeeeeeeeeee	chr5:145843248-145843499(+)$1	251	84	114	21.1926
hhh!!cccuuuuuuuuuuuuccc22hhhhh	chr14:59942401-59942655(-)$1	254	77	107	24.3424
b[ffffffvvvvvvvvvvvvvffffff]bb	chr1:145441057-145441270(+)$1	213	131	161	24.1353
!gggggggwwwwwwwwwwwwwwggggggg3	chr3:42662896-42663164(+)$1	268	222	252	24.6090
eeee[ddddtttttttttttddddeeeee]	chr15:43477794-43478136(+)$1	342	155	185	23.5014
eggggggguuuuuuuuuuuuggggggg::i	chr5:130927931-130928166(-)$1	235	116	146	23.9876
=========ttttttttttt==========	chr2:152292012-152292301(+)$1	289	85	115	26.2496
!gggggggvvvvvvvvvvvvvggggggg22	chr9:123638967-123639221(-)$1	254	89	119	25.7736
!cccyyyyyyyyyyyyyyyyccc22eeeee	chr5:110439963-110440208(+)$1	245	175	205	21.8195
[ddddcccuuuuuuuuuuuuccc]dddd]d	chr19:10226894-10227144(-)$1	250	76	106	24.3750
:ggggggguuuuuuuuuuuugggggggeee	chr16:89940464-89940737(+)$1	273	183	213	24.7708
========vvvvvvvvvvvvv=========	chr8:82626851-82627147(-)$1	296	161	191	26.7645
[bb[ddddtttttttttttdddd]bb]ccc	chr19:49964801-49965135(+)$1	334	83	113	22.7205
eeeee[bbvvvvvvvvvvvvvbb]eeeee:	chr1:242012222-242012487(+)$1	265	162	192	23.3079
ccc[eeeeettttttttttteeeee]cccc	chr1:153927387-153927655(-)$1	268	6	36	24.0829
d[ffffffwwwwwwwwwwwwwwffffffdd	chr8:17863799-17864009(+)$1	210	51	81	22.7657
iiiiiiiiuuuuuuuuuuuuiiiiiiiii]	chr9:140100287-140100512(+)$1	225	181	211	26.6147
cc!!bbccctttttttttttccc]bb22cc	chr11:43351523-43351780(+)$1	257	122	152	23.7711
ffff!!bbuuuuuuuuuuuubb22ffffff	chr17:57760266-57760532(+)$1	266	107	137	24.0487
$$$bb[bbtttttttttttbbbb333bb]f	chr10:103577355-103577651(-)$1	296	96	126	21.6839
hhhhhhccctttttttttttccc]hhhhhh	chr12:133237907-133238157(-)$1	250	127	157	23.3442
=========ttttttttttt==========	chr7:92826444-92826685(-)$1	241	132	162	26.2496
ddd:dddduuuuuuuuuuuudddd======	chrX:16186657-16186885(-)$1	228	81	111	23.3648
[gggggggvvvvvvvvvvvvvggggggga]	chr14:20940512-20940851(+)$1	339	50	80	26.1191
ee[a[cccuuuuuuuuuuuuccc]aeeeee	chr4:71835666-71835955(+)$1	289	107	137	25.4596
ffffyyyyyyyyyyyyyyyyffffff333c	chr1:213303116-213303416(+)$1	300	203	233	21.9028
[ffffffbbtttttttttttbb]ffffffh	chrX:100387337-100387594(+)$1	257	160	190	23.5622
ggg[eeeeettttttttttteeeee333gg	chr11:62623200-62623441(-)$1	241	15	45	24.5638
!bb!!ddddtttttttttttdddd22bb33	chr2:26456916-26457155(-)$1	239	121	151	22.9546
hhhhhhhhvvvvvvvvvvvvvhhhhhhhha	chr19:4447354-4447598(-)$1	244	164	194	22.5860
iiiiiiiiitttttttttttiiiiiiiii2	chr1:227169763-227170032(+)$1	269	10	40	25.4334

#otherMatches

#Seq PSSM
UACCUGGUCCCCCUUCAUUACAGGUAUGUU	chr2:27534615-27534889(-)$1	274	100	130	20.3845
ACAUGAGCUGAACAAAGAUGCUCCAUUCUC	chr8:22106065-22106337(+)$1	272	226	256	22.5250
ACCGGCUGUCUAUUCUUACCAAGCUGGUUA	chr1:55559441-55559707(-)$1	266	12	42	24.9506
UUUUAUCAAACUUAUUUUUGUGAUAUUCUC	chr2:61709929-61710172(-)$1	243	8	38	24.3240
AUUGGUUUUAAAAUAAGAUAGAAACUAAUG	chr3:176750549-176750871(-)$1	322	226	256	24.2032
UGGGAGAGAGAGAUUAAGCAACUUUUCUGA	chr3:23960041-23960290(+)$1	249	73	103	23.2240
CCUACCGCCGGUUCCAGAAUGUGAGUAGGU	chr20:34214325-34214588(-)$1	263	80	110	26.2273
UCGGUGCAACACAUCUGAAACUAGCACCGC	chr10:28822869-28823157(+)$1	288	192	222	22.2151
UGUUAACAUUUUCAUAUCAUUUGCAAACUC	chr3:141682374-141682712(-)$1	338	98	128	24.3773
UUUGAUAUACCCAGAAUUUAGUAUCAAGAG	chr2:55209466-55209727(-)$1	261	100	130	27.0425
UAAUAGCUCCUUAAUAACUCAGCUAGACAG	chr11:10777219-10777497(+)$1	278	191	221	21.8750
ACGAGACGUGAUUAUGAGGGAGUUUCGUUC	chr17:7480972-7481212(+)$1	240	195	225	25.3050
uaagugcuauaauuauauggaagccuuaga	chr16:56487227-56487629(+)$1	402	268	298	24.9080
ucuagucccacuauguacacggacuCCAAU	chr12:102514113-102514400(+)$1	287	242	272	22.2759
GUGAUUGUAUACUAAGGCUUUACACAUAUG	chr1:52280027-52280321(-)$1	294	254	284	24.9196
CAGAAGAGGAUCUACGAACACUGUUCGCUA	chr1:97278470-97278733(+)$1	263	125	155	24.8478
UGAUGUAUUAAAACAAAUUCUACCUCAAAG	chr2:106780973-106781252(-)$1	279	242	272	24.9702
aaucuguuuccuauugcuuauaacagaaua	chr7:87516696-87516938(+)$1	242	122	152	23.4325
GAAUGGAUGUGUAAAGUGGUUCCGUUUCAG	chr18:47812168-47812456(-)$1	288	84	114	25.3921
GUAAGGAUUUUUCUUUAUUCAGUUCUUAUU	chr21:17163877-17164160(+)$1	283	106	136	26.2496
UUAUCUCACAUAUGGGAAAACUGAGAAGGA	chr2:177134386-177134631(+)$1	245	156	186	23.8273
CUGGGCAUACCUGUGAACAUUGCUCUUACU	chr17:65211735-65212073(-)$1	338	213	243	24.3752
CUACCAGGGAUAGAGUUUGGUGUGGAUAGC	chr1:36070623-36070899(-)$1	276	201	231	24.9012
AGGGCCAGUGCUUUCAUUUCCUGACUCUAC	chr19:10286073-10286315(-)$1	242	102	132	26.6671
ACUGAAUUUUUGUAUAUUUUAAUUUAUUAU	chr4:128804395-128804662(+)$1	267	151	181	24.7344
GUGCCACACUUCUUAAAAUUGUUGCUUUUA	chr21:37709201-37709542(+)$1	341	115	145	23.8656
CCCUGCUGUCCACCUUCAAAGCACCAGGGC	chr8:144657444-144657686(-)$1	242	112	142	23.8633
AGAAGCACUUCAUUGAAAGUAGUGCUGUAA	chr1:11083265-11083497(+)$1	232	10	40	21.8545
CUGGCAUGCCAAUUCCACUUCCAGGUAAAC	chr5:145843248-145843499(+)$1	251	84	114	21.1926
CACCCUUAGCUUCUUAUUUAUAAAUGUGUC	chr14:59942401-59942655(-)$1	254	77	107	24.3424
CCCUGCAUCCUCAACAACAAUGUGCAGUGA	chr1:145441057-145441270(+)$1	213	131	161	24.1353
UUUAUUAUUAAUUUCUAAUAUCAUAGUAAC	chr3:42662896-42663164(+)$1	268	222	252	24.6090
gagguggcUCCGCUUACCUCAGCUUUUCCA	chr15:43477794-43478136(+)$1	342	155	185	23.5014
GGCAAAGUUAAUGUUAAACUAUUUUGUAUA	chr5:130927931-130928166(-)$1	235	116	146	23.9876
AGAGGUAGAUAUUCUUGUUUUUUGCUUUUU	chr2:152292012-152292301(+)$1	289	85	115	26.2496
CCCCCGAUCUUUAAUUUUCCUAUCGGGGUG	chr9:123638967-123639221(-)$1	254	89	119	25.7736
CCUAGAAGAUGAAAGGAAUAUGGAAUGAGA	chr5:110439963-110440208(+)$1	245	175	205	21.8195
CUGGGCGCUGUUCCUGUUGUGUGUCCCAUG	chr19:10226894-10227144(-)$1	250	76	106	24.3750
ACGUGGGCGGGAUUAAAUGGGCCUGCGGCC	chr16:89940464-89940737(+)$1	273	183	213	24.7708
UUCUUAUAUCUACUUUCCAAUUAUGGGAGG	chr8:82626851-82627147(-)$1	296	161	191	26.7645
UGGUGGCCCUCGUGCCCCCGGCCUCCCCGG	chr19:49964801-49965135(+)$1	334	83	113	22.7205
CUGCUUUGUUUAAAAUUCAUUCACAGCAGA	chr1:242012222-242012487(+)$1	265	162	192	23.3079
GUCUCAGUUACAGGCCCAAAAACUGCGACU	chr1:153927387-153927655(-)$1	268	6	36	24.0829
AUGAGAGCAAAGAGUUUGUAAAGUUCUUUC	chr8:17863799-17864009(+)$1	210	51	81	22.7657
CUUUCCCUUAUGGCGGAUUUAGGGAAGGAG	chr9:140100287-140100512(+)$1	225	181	211	26.6147
CCAUACCAAACUAUAUAGACUUGUGUUGGG	chr11:43351523-43351780(+)$1	257	122	152	23.7711
AGGUAUUAACGAGACUUUUAUAUGACCUGA	chr17:57760266-57760532(+)$1	266	107	137	24.0487
UUUGGCACUAACACGUUCUGUCCUCGGGAG	chr10:103577355-103577651(-)$1	296	96	126	21.6839
GGAGCCAGGAUAGAAACAGACCUGGGUUCU	chr12:133237907-133238157(-)$1	250	127	157	23.3442
GUAAUGGCCAAGCUGAAAAGGGCUAUUAUC	chr7:92826444-92826685(-)$1	241	132	162	26.2496
GGUAAGCCACAUCCUCUCAAGGCUGUUUAG	chrX:16186657-16186885(-)$1	228	81	111	23.3648
AGGUCUGACUGAUAAAUUAACUCAGGCCCA	chr14:20940512-20940851(+)$1	339	50	80	26.1191
UUACAUUAUUUUACGGUUCUUAAAGAAAAA	chr4:71835666-71835955(+)$1	289	107	137	25.4596
UUAUGGAAAUAAUACUGAAAAUGAGAAAUU	chr1:213303116-213303416(+)$1	300	203	233	21.9028
AGUGGUACACAAUUCCAAACUGAUAUUACA	chrX:100387337-100387594(+)$1	257	160	190	23.5622
UAGCCCCGCCCCCAAAUCCCGUGGGCCUCU	chr11:62623200-62623441(-)$1	241	15	45	24.5638
UCAUCAGCUGUAAACCCUUAGGCUACUGCU	chr2:26456916-26457155(-)$1	239	121	151	22.9546
GUUGAGCCACAAGCAGUGAAGGGUUCGGCC	chr19:4447354-4447598(-)$1	244	164	194	22.5860
UGCAGAGCGGAUCGUGCGCACGCUCUGCAA	chr1:227169763-227170032(+)$1	269	10	40	25.4334

#DB
((((((..............)))))).)))	chr2:27534615-27534889(-)$1	1	100	130	20.3845
....((((...........))))...)))(	chr8:22106065-22106337(+)$1	1	226	256	22.5250
(((((((..............)))))))))	chr1:55559441-55559707(-)$1	1	12	42	24.9506
...(((((............)))))..)))	chr2:61709929-61710172(-)$1	1	8	38	24.3240
(((((((((...........))))))))))	chr3:176750549-176750871(-)$1	1	226	256	24.2032
(.((((((..............)))))).)	chr3:23960041-23960290(+)$1	1	73	103	23.2240
(.((((((............))).))))))	chr20:34214325-34214588(-)$1	1	80	110	26.2273
.((((((................)))))).	chr10:28822869-28823157(+)$1	1	192	222	22.2151
((((..((.............))..)))..	chr3:141682374-141682712(-)$1	1	98	128	24.3773
((((((((............))))))))))	chr2:55209466-55209727(-)$1	1	100	130	27.0425
((((((((............)))).(((((	chr11:10777219-10777497(+)$1	1	191	221	21.8750
(((((((..............)))))))))	chr17:7480972-7481212(+)$1	1	195	225	25.3050
((((.(((.............)))))))))	chr16:56487227-56487629(+)$1	1	268	298	24.9080
...(((((............))))))))..	chr12:102514113-102514400(+)$1	1	242	272	22.2759
(((..((((...........))))))))))	chr1:52280027-52280321(-)$1	1	254	284	24.9196
(.(((.((............)).)))))).	chr1:97278470-97278733(+)$1	1	125	155	24.8478
(((.(((.............))).))))))	chr2:106780973-106781252(-)$1	1	242	272	24.9702
))((((((.............)))))).((	chr7:87516696-87516938(+)$1	1	122	152	23.4325
(((((((.............))))))))))	chr18:47812168-47812456(-)$1	1	84	114	25.3921
(((((((((...........))))))))))	chr21:17163877-17164160(+)$1	1	106	136	26.2496
(..(((((.............)))))))).	chr2:177134386-177134631(+)$1	1	156	186	23.8273
..(((((.............)))))...))	chr17:65211735-65212073(-)$1	1	213	243	24.3752
((((((.(............).))).))))	chr1:36070623-36070899(-)$1	1	201	231	24.9012
((((.(((............))).))))))	chr19:10286073-10286315(-)$1	1	102	132	26.6671
(.((((((............))))))...)	chr4:128804395-128804662(+)$1	1	151	181	24.7344
..((.(((...........))).)))))))	chr21:37709201-37709542(+)$1	1	115	145	23.8656
(((((.(((...........))).))))).	chr8:144657444-144657686(-)$1	1	112	142	23.8633
(((((((((...........))))))....	chr1:11083265-11083497(+)$1	1	10	40	21.8545
((((................)))))(((((	chr5:145843248-145843499(+)$1	1	84	114	21.1926
(((..(((............)))..)))))	chr14:59942401-59942655(-)$1	1	77	107	24.3424
(.((((((.............)))))).))	chr1:145441057-145441270(+)$1	1	131	161	24.1353
.(((((((..............))))))).	chr3:42662896-42663164(+)$1	1	222	252	24.6090
((((.((((...........))))))))).	chr15:43477794-43478136(+)$1	1	155	185	23.5014
)(((((((............)))))))..(	chr5:130927931-130928166(-)$1	1	116	146	23.9876
(((((((((...........))))))))))	chr2:152292012-152292301(+)$1	1	85	115	26.2496
.(((((((.............)))))))..	chr9:123638967-123639221(-)$1	1	89	119	25.7736
.(((................)))..)))))	chr5:110439963-110440208(+)$1	1	175	205	21.8195
.(((((((............))).)))).)	chr19:10226894-10227144(-)$1	1	76	106	24.3750
.(((((((............)))))))(((	chr16:89940464-89940737(+)$1	1	183	213	24.7708
((((((((.............)))))))))	chr8:82626851-82627147(-)$1	1	161	191	26.7645
.((.((((...........)))).)).)))	chr19:49964801-49965135(+)$1	1	83	113	22.7205
(((((.((.............)).))))).	chr1:242012222-242012487(+)$1	1	162	192	23.3079
(((.(((((...........))))).))))	chr1:153927387-153927655(-)$1	1	6	36	24.0829
(.((((((..............))))))))	chr8:17863799-17864009(+)$1	1	51	81	22.7657
((((((((............))))))))).	chr9:140100287-140100512(+)$1	1	181	211	26.6147
((..(((((...........))).))..))	chr11:43351523-43351780(+)$1	1	122	152	23.7711
((((..((............))..))))))	chr17:57760266-57760532(+)$1	1	107	137	24.0487
...((.((...........))))...)).)	chr10:103577355-103577651(-)$1	1	96	126	21.6839
(((((((((...........))).))))))	chr12:133237907-133238157(-)$1	1	127	157	23.3442
(((((((((...........))))))))))	chr7:92826444-92826685(-)$1	1	132	162	26.2496
))).((((............))))((((((	chrX:16186657-16186885(-)$1	1	81	111	23.3648
.(((((((.............)))))))).	chr14:20940512-20940851(+)$1	1	50	80	26.1191
((.(.(((............))).))))))	chr4:71835666-71835955(+)$1	1	107	137	25.4596
((((................))))))...)	chr1:213303116-213303416(+)$1	1	203	233	21.9028
.((((((((...........)).)))))))	chrX:100387337-100387594(+)$1	1	160	190	23.5622
(((.(((((...........)))))...))	chr11:62623200-62623441(-)$1	1	15	45	24.5638
.((..((((...........))))..))..	chr2:26456916-26457155(-)$1	1	121	151	22.9546
((((((((.............)))))))))	chr19:4447354-4447598(-)$1	1	164	194	22.5860
(((((((((...........))))))))).	chr1:227169763-227170032(+)$1	1	10	40	25.4334

#PSSM
e : 0.15	= : 0.11	f : 0.10	i : 0.08	[ : 0.08	c : 0.08	! : 0.08	$ : 0.05	g : 0.05	h : 0.05	# : 0.03	b : 0.03	d : 0.03	F : 0.01	: : 0.01	
g : 0.13	f : 0.11	= : 0.11	e : 0.11	[ : 0.10	c : 0.08	i : 0.06	$ : 0.05	h : 0.05	# : 0.03	! : 0.03	d : 0.03	b : 0.03	F : 0.01	
f : 0.20	g : 0.13	= : 0.11	c : 0.10	e : 0.10	i : 0.06	$ : 0.05	b : 0.05	h : 0.05	! : 0.03	d : 0.03	# : 0.01	F : 0.01	[ : 0.01	
f : 0.18	e : 0.15	g : 0.11	= : 0.10	c : 0.08	i : 0.06	! : 0.06	[ : 0.06	b : 0.03	h : 0.03	$ : 0.01	F : 0.01	d : 0.01	: : 0.01	a : 0.01	
f : 0.15	e : 0.13	= : 0.10	g : 0.10	d : 0.08	! : 0.08	[ : 0.08	i : 0.06	c : 0.06	y : 0.05	b : 0.03	h : 0.03	
f : 0.15	c : 0.15	d : 0.11	e : 0.10	= : 0.10	g : 0.10	i : 0.06	[ : 0.06	y : 0.05	! : 0.03	h : 0.03	b : 0.01	
c : 0.18	f : 0.13	d : 0.11	e : 0.10	= : 0.10	g : 0.10	b : 0.08	i : 0.06	y : 0.05	w : 0.01	[ : 0.01	h : 0.01	
c : 0.16	d : 0.11	f : 0.10	b : 0.10	e : 0.08	= : 0.08	g : 0.08	y : 0.06	w : 0.05	i : 0.05	v : 0.05	a : 0.01	h : 0.01	
u : 0.28	v : 0.22	w : 0.10	t : 0.06	y : 0.06	d : 0.05	= : 0.05	c : 0.05	i : 0.03	e : 0.03	f : 0.01	b : 0.01	
t : 0.32	u : 0.28	v : 0.22	w : 0.10	y : 0.06	
t : 0.32	u : 0.28	v : 0.22	w : 0.10	y : 0.06	
t : 0.32	u : 0.28	v : 0.22	w : 0.10	y : 0.06	
t : 0.32	u : 0.28	v : 0.22	w : 0.10	y : 0.06	
t : 0.32	u : 0.28	v : 0.22	w : 0.10	y : 0.06	
t : 0.32	u : 0.28	v : 0.22	w : 0.10	y : 0.06	
t : 0.32	u : 0.28	v : 0.22	w : 0.10	y : 0.06	
t : 0.32	u : 0.28	v : 0.22	w : 0.10	y : 0.06	
t : 0.32	u : 0.28	v : 0.22	w : 0.10	y : 0.06	
t : 0.32	u : 0.28	v : 0.22	w : 0.10	y : 0.06	
u : 0.28	t : 0.25	v : 0.22	w : 0.10	y : 0.06	d : 0.03	c : 0.01	b : 0.01	
c : 0.18	v : 0.16	d : 0.11	e : 0.10	w : 0.08	f : 0.06	= : 0.06	b : 0.06	i : 0.05	g : 0.05	y : 0.01	a : 0.01	
c : 0.20	d : 0.11	e : 0.11	f : 0.10	b : 0.10	= : 0.10	g : 0.08	i : 0.06	w : 0.05	y : 0.01	] : 0.01	h : 0.01	
c : 0.20	f : 0.13	d : 0.11	e : 0.11	= : 0.10	g : 0.10	i : 0.06	b : 0.05	] : 0.05	y : 0.01	2 : 0.01	h : 0.01	
f : 0.16	] : 0.16	e : 0.11	= : 0.10	g : 0.10	d : 0.08	i : 0.06	2 : 0.06	c : 0.05	3 : 0.03	b : 0.01	h : 0.01	
f : 0.20	e : 0.18	= : 0.13	g : 0.11	i : 0.06	2 : 0.06	c : 0.05	b : 0.05	3 : 0.03	h : 0.03	: : 0.01	d : 0.01	a : 0.01	
f : 0.20	= : 0.13	g : 0.13	e : 0.13	i : 0.08	3 : 0.06	c : 0.06	h : 0.05	2 : 0.03	] : 0.03	b : 0.03	d : 0.01	
f : 0.15	= : 0.13	g : 0.13	c : 0.11	e : 0.11	i : 0.08	3 : 0.06	h : 0.05	2 : 0.03	b : 0.03	: : 0.01	8 : 0.01	d : 0.01	] : 0.01	
e : 0.15	c : 0.13	= : 0.13	f : 0.11	i : 0.10	g : 0.08	3 : 0.06	h : 0.05	: : 0.03	b : 0.03	F : 0.01	8 : 0.01	] : 0.01	d : 0.01	2 : 0.01	
e : 0.16	= : 0.13	c : 0.11	i : 0.10	f : 0.08	3 : 0.06	g : 0.06	] : 0.05	h : 0.05	: : 0.03	d : 0.03	F : 0.01	8 : 0.01	b : 0.01	2 : 0.01	a : 0.01	
e : 0.13	= : 0.13	c : 0.10	i : 0.06	] : 0.06	3 : 0.06	: : 0.06	f : 0.06	g : 0.05	d : 0.05	h : 0.05	b : 0.03	2 : 0.03	F : 0.01	J : 0.01	8 : 0.01	a : 0.01	

#score	1423.7972266047586
#seq	59
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_UTR_m1_run1.txt

#BEAR
:eeeeevvvvvvvvvvvvveeeee:	chr3:9482054-9482405(+)$1	351	192	217	21.0167
ccc[bbvvvvvvvvvvvvvbbccc:	chr6:30545805-30546082(+)$1	277	39	64	21.2240
eeeeewwwwwwwwwwwwwweeeeed	chr2:27898369-27898651(+)$1	282	149	174	23.5308
=======uuuuuuuuuuuu======	chr4:184180756-184180982(+)$1	226	25	50	22.1127
ii[bbwwwwwwwwwwwwwwbb]iii	chr17:62500126-62500335(-)$1	209	87	112	23.5372
!!cccwwwwwwwwwwwwwwccc22e	chr15:34837477-34837728(-)$1	251	154	179	24.0889
fffffxxxxxxxxxxxxxxxfffff	chr6:31498577-31498794(-)$1	217	70	95	19.9269
e[dddduuuuuuuuuuuudddd]ee	chr2:216229596-216229808(-)$1	212	112	137	22.1597
$$$bbwwwwwwwwwwwwwwbb5555	chr4:3520496-3520729(-)$1	233	138	163	19.8552
d[cccwwwwwwwwwwwwwwccc]dd	chr6:56380147-56380451(-)$1	304	120	145	23.9183
c[dddduuuuuuuuuuuudddd]cc	chr17:43163796-43164119(+)$1	323	5	30	22.1356
========ttttttttttt======	chr1:67878761-67879049(-)$1	288	64	89	18.9717
eeee[ccctttttttttttccc]ee	chr13:76374719-76374994(+)$1	275	212	237	19.5949
$$ddddvvvvvvvvvvvvvdddd88	chr3:9489456-9489770(+)$1	314	214	239	21.1155
hhhhhhvvvvvvvvvvvvvhhhhhh	chr2:198359931-198360165(-)$1	234	198	223	19.8653
iiiiivvvvvvvvvvvvviiiiiii	chr16:9012850-9013095(-)$1	245	185	210	22.2470
fffffwwwwwwwwwwwwwwffffff	chr2:232577056-232577323(+)$1	267	90	115	23.5354
fffffxxxxxxxxxxxxxxxfffff	chr1:44003767-44004042(+)$1	275	157	182	19.9269
gggggxxxxxxxxxxxxxxxggggg	chr2:175979315-175979590(-)$1	275	110	135	20.2200
ffffffvvvvvvvvvvvvvffffff	chr9:117359855-117360169(+)$1	314	254	279	22.4599
""ddddtttttttttttdddd333i	chr1:70716369-70716657(+)$1	288	139	164	19.7555
""cccyyyyyyyyyyyyyyyyccc3	chr16:89356956-89357261(-)$1	305	88	113	20.9998
ffffffuuuuuuuuuuuuffffff]	chr11:129997584-129997834(+)$1	250	185	210	22.0242
"""ccctttttttttttcccdddde	chr3:187447166-187447450(-)$1	284	249	274	19.9129
[ffffffuuuuuuuuuuuuffffff	chr14:31869587-31869819(-)$1	232	17	42	21.8359
##bbxxxxxxxxxxxxxxxbb333c	chr17:65821701-65822026(+)$1	325	111	136	19.8588
!!cccwwwwwwwwwwwwwwccc]dd	chr1:6257634-6257920(-)$1	286	39	64	24.3044
eeeeeuuuuuuuuuuuueeeee]ee	chr6:136588126-136588413(-)$1	287	23	48	21.7685
=====xxxxxxxxxxxxxxx=====	chr10:93756170-93756418(+)$1	248	136	161	20.4868
fffffwwwwwwwwwwwwwwffffff	chr3:41265916-41266172(+)$1	256	207	232	23.5354
eeeeewwwwwwwwwwwwwweeeeeg	chr17:16042307-16042564(-)$1	257	169	194	23.6703
fffffwwwwwwwwwwwwwwffffff	chr1:92195310-92195572(-)$1	262	51	76	23.5354
eeeeexxxxxxxxxxxxxxxeeeee	chr3:187442677-187442925(-)$1	248	28	53	19.9464
ii[bbwwwwwwwwwwwwwwbb]iii	chr17:62500021-62500306(-)$1	285	58	83	23.5372
:dddduuuuuuuuuuuudddd:ddd	chr7:155534552-155534835(+)$1	283	33	58	18.6466
""cccxxxxxxxxxxxxxxxccc55	chr17:40265659-40265907(-)$1	248	17	42	18.9985
e[dddduuuuuuuuuuuudddd]ee	chr2:216229554-216229796(-)$1	242	100	125	22.1597
eeeeewwwwwwwwwwwwwweeeee]	chr17:77073686-77073931(+)$1	245	91	116	23.7260
cc[avvvvvvvvvvvvva]ccc]dd	chr2:242606093-242606350(+)$1	257	94	119	21.1434
g[cccwwwwwwwwwwwwwwccc22g	chr11:129979373-129979597(+)$1	224	9	34	23.9592
:ffffffuuuuuuuuuuuuffffff	chrX:30737480-30737745(+)$1	265	93	118	20.8559
fffffvvvvvvvvvvvvvffffff]	chr6:56401476-56401836(-)$1	360	60	85	22.2630
fffffwwwwwwwwwwwwwwffffff	chr6:56391142-56391415(-)$1	273	164	189	23.5354
eeeeexxxxxxxxxxxxxxxeeeee	chr2:39583325-39583581(-)$1	256	55	80	19.9464
b!!bbwwwwwwwwwwwwwwbb22bb	chr2:62991389-62991596(+)$1	207	27	52	22.6204
dd[ddddtttttttttttdddd]dd	chr12:46758333-46758581(-)$1	248	31	56	18.7973
gggggvvvvvvvvvvvvvggggggg	chr3:142761857-142762211(+)$1	354	273	298	22.3520
"eeeeettttttttttteeeee]cc	chr12:56493629-56493914(+)$1	285	116	141	19.9640
gggggwwwwwwwwwwwwwwgggggg	chr14:24607303-24607543(+)$1	240	27	52	23.7965
"""bbvvvvvvvvvvvvvbb333ff	chr2:242206153-242206421(-)$1	268	194	219	22.5062
$$ddddvvvvvvvvvvvvvdddd66	chr2:71653750-71654011(+)$1	261	133	158	21.1511
:eeeeevvvvvvvvvvvvveeeee:	chr12:132248998-132249304(+)$1	306	138	163	21.0167
:ffffffuuuuuuuuuuuuffffff	chr17:72205841-72206085(+)$1	244	7	32	20.8559
!!bbxxxxxxxxxxxxxxxbb22dd	chr7:155537661-155537999(+)$1	338	165	190	19.3445
::eeeeeuuuuuuuuuuuueeeee:	chr20:34292305-34292550(-)$1	245	92	117	19.2113
eeeeexxxxxxxxxxxxxxxeeeee	chr19:13888867-13889153(+)$1	286	172	197	19.9464
""cccwwwwwwwwwwwwwwccc22=	chr17:66521791-66522069(+)$1	278	172	197	24.1194
ii[bbwwwwwwwwwwwwwwbb]iii	chr17:62500106-62500326(-)$1	220	78	103	23.5372
!!a[bbtttttttttttbb]a22a]	chr16:89350204-89350477(-)$1	273	177	202	19.2110

#otherMatches

#Seq PSSM
CAGUGCAGAUGUACAGAACGCGCUU	chr3:9482054-9482405(+)$1	351	192	217	21.0167
CUCAGCAGCAAAAAAAAAAGCGAGA	chr6:30545805-30546082(+)$1	277	39	64	21.2240
CUGGCAAGAUUGAUGAGAAGCCAGA	chr2:27898369-27898651(+)$1	282	149	174	23.5308
UUCUUCCUAGAUUGAGAUUGGAAGA	chr4:184180756-184180982(+)$1	226	25	50	22.1127
GUUACUAAUUAUAGCAAAUGUCAUG	chr17:62500126-62500335(-)$1	209	87	112	23.5372
UUAUUUUCUUAUAAUACUCAAUUUU	chr15:34837477-34837728(-)$1	251	154	179	24.0889
CUACCCUCUGUCUCCCUCCAGGUGG	chr6:31498577-31498794(-)$1	217	70	95	19.9269
GUUAUGAUGAUGGGAAGACAUACCA	chr2:216229596-216229808(-)$1	212	112	137	22.1597
cccgcccccacccccuccugcccuc	chr4:3520496-3520729(-)$1	233	138	163	19.8552
ACAGAAACACAAUCAAUCAUCUCUC	chr6:56380147-56380451(-)$1	304	120	145	23.9183
UCUUGAACUCAUAAUUAAUCAAAAG	chr17:43163796-43164119(+)$1	323	5	30	22.1356
AACUGAGAACUGUGGUUAAUUUUGG	chr1:67878761-67879049(-)$1	288	64	89	18.9717
AAGAUUCCUUUGAAAGCUUGGACUC	chr13:76374719-76374994(+)$1	275	212	237	19.5949
AAUACCCCAAAACCAAAAAGGUAAG	chr3:9489456-9489770(+)$1	314	214	239	21.1155
GUGAUUUUUUUUUUCCCUUGAUCAC	chr2:198359931-198360165(-)$1	234	198	223	19.8653
UUUUCACGAAUCAGCUACGAAAGGU	chr16:9012850-9013095(-)$1	245	185	210	22.2470
CUCCAGGUGAGGAAGAGGAUGGAGA	chr2:232577056-232577323(+)$1	267	90	115	23.5354
ccggggugaagaagcaaaGACUCGG	chr1:44003767-44004042(+)$1	275	157	182	19.9269
AGUACCUUCACCAACCUCAAGUACU	chr2:175979315-175979590(-)$1	275	110	135	20.2200
AUAUGGCAUUAAAUUAUUUCCAUAU	chr9:117359855-117360169(+)$1	314	254	279	22.4599
CAACUGUAUACCUGCAUCAGUGUCA	chr1:70716369-70716657(+)$1	288	139	164	19.7555
CCUCAAAAACCAAAGAUAAAGUGAA	chr16:89356956-89357261(-)$1	305	88	113	20.9998
CUGACCAUUGGAAAAUACGGUCAGA	chr11:129997584-129997834(+)$1	250	185	210	22.0242
CACAGAGCCCCCAGAAAUCUGACUG	chr3:187447166-187447450(-)$1	284	249	274	19.9129
AAAUAUAUGAAAGAAAAAUUAUAUU	chr14:31869587-31869819(-)$1	232	17	42	21.8359
uuccuucuccccccgccucgGCUCC	chr17:65821701-65822026(+)$1	325	111	136	19.8588
CUGUUAAUCUUGUUUUUCCGACUGA	chr1:6257634-6257920(-)$1	286	39	64	24.3044
UGCAGUAAAAUUAGAAUUUGCAUGU	chr6:136588126-136588413(-)$1	287	23	48	21.7685
GUGCAAUUGAAGCACUUGCCUGUAU	chr10:93756170-93756418(+)$1	248	136	161	20.4868
ACCACAGCUCCUUCUCUGAGUGGUA	chr3:41265916-41266172(+)$1	256	207	232	23.5354
CCUAUGAAAGUGUAUAAAGAUAGGC	chr17:16042307-16042564(-)$1	257	169	194	23.6703
UCCCUCCAAAGUGCAACAUAGGGAA	chr1:92195310-92195572(-)$1	262	51	76	23.5354
GAAGACCUCUCAUGCCUUCUUCUUC	chr3:187442677-187442925(-)$1	248	28	53	19.9464
GUUACUAAUUAUAGCAAAUGUCAUG	chr17:62500021-62500306(-)$1	285	58	83	23.5372
UGCGUGAAUUACCCAUAGCGCCGUC	chr7:155534552-155534835(+)$1	283	33	58	18.6466
AAAGCUGUGCUCCGUCUCCUGCUGC	chr17:40265659-40265907(-)$1	248	17	42	18.9985
GUUAUGAUGAUGGGAAGACAUACCA	chr2:216229554-216229796(-)$1	242	100	125	22.1597
UCAGCUUUUACUUGUCUUCGCUGGA	chr17:77073686-77073931(+)$1	245	91	116	23.7260
GUACUUCUCAUUCCCCUGCGCCUGG	chr2:242606093-242606350(+)$1	257	94	119	21.1434
UUGUGGGAAGUUAAAUAUGCAUGUG	chr11:129979373-129979597(+)$1	224	9	34	23.9592
UACUUCGUCCCAGCAUUUUCGGGGU	chrX:30737480-30737745(+)$1	265	93	118	20.8559
UAAUAUAACUCAUAUAAUUAUUACU	chr6:56401476-56401836(-)$1	360	60	85	22.2630
GUAGCUGAGGACAAUGAGCGCUACC	chr6:56391142-56391415(-)$1	273	164	189	23.5354
UUGAAACUUACCUCUAAAUAUUCAA	chr2:39583325-39583581(-)$1	256	55	80	19.9464
CUGGAAUAAAAAAUCCCUAUCGUGG	chr2:62991389-62991596(+)$1	207	27	52	22.6204
AAAAGAUAUUUGCCUUAAAUCUGUU	chr12:46758333-46758581(-)$1	248	31	56	18.7973
GUGAAACUUAAAUUACACUUUAUUG	chr3:142761857-142762211(+)$1	354	273	298	22.3520
ACCUGGCAACCACCACACUGGGCUC	chr12:56493629-56493914(+)$1	285	116	141	19.9640
GAGCGCUGCCCCACUUCCCUGCUCU	chr14:24607303-24607543(+)$1	240	27	52	23.7965
GUUCCGCAACAAAUCAAAGGUGACA	chr2:242206153-242206421(-)$1	268	194	219	22.5062
GAACUAAAUAUGGAAGAAAUGGUAA	chr2:71653750-71654011(+)$1	261	133	158	21.1511
UGCUGCAAACACUAACCCAGCAGUU	chr12:132248998-132249304(+)$1	306	138	163	21.0167
GUGUGCUCUCUUUAGCUUAAGUACA	chr17:72205841-72206085(+)$1	244	7	32	20.8559
CCCCACCCCCAGCAGAGCAGGAAGA	chr7:155537661-155537999(+)$1	338	165	190	19.3445
ACCUGUUUCCUGAUUCUAUGACAGC	chr20:34292305-34292550(-)$1	245	92	117	19.2113
UCCCACCCCCUACCUCCAUAUGGGA	chr19:13888867-13889153(+)$1	286	172	197	19.9464
UAUGGAACACCGAGAGCAGCCACUG	chr17:66521791-66522069(+)$1	278	172	197	24.1194
GUUACUAAUUAUAGCAAAUGUCAUG	chr17:62500106-62500326(-)$1	220	78	103	23.5372
GACAGCAAGGAGAGGAGGCGGGACA	chr16:89350204-89350477(-)$1	273	177	202	19.2110

#DB
.(((((.............))))).	chr3:9482054-9482405(+)$1	1	192	217	21.0167
(((.((.............))))).	chr6:30545805-30546082(+)$1	1	39	64	21.2240
(((((..............))))))	chr2:27898369-27898651(+)$1	1	149	174	23.5308
(((((((............))))))	chr4:184180756-184180982(+)$1	1	25	50	22.1127
((.((..............)).)))	chr17:62500126-62500335(-)$1	1	87	112	23.5372
..(((..............)))..)	chr15:34837477-34837728(-)$1	1	154	179	24.0889
(((((...............)))))	chr6:31498577-31498794(-)$1	1	70	95	19.9269
(.((((............)))).))	chr2:216229596-216229808(-)$1	1	112	137	22.1597
...((..............))....	chr4:3520496-3520729(-)$1	1	138	163	19.8552
(.(((..............))).))	chr6:56380147-56380451(-)$1	1	120	145	23.9183
(.((((............)))).))	chr17:43163796-43164119(+)$1	1	5	30	22.1356
((((((((...........))))))	chr1:67878761-67879049(-)$1	1	64	89	18.9717
((((.(((...........))).))	chr13:76374719-76374994(+)$1	1	212	237	19.5949
..((((.............))))..	chr3:9489456-9489770(+)$1	1	214	239	21.1155
((((((.............))))))	chr2:198359931-198360165(-)$1	1	198	223	19.8653
(((((.............)))))))	chr16:9012850-9013095(-)$1	1	185	210	22.2470
(((((..............))))))	chr2:232577056-232577323(+)$1	1	90	115	23.5354
(((((...............)))))	chr1:44003767-44004042(+)$1	1	157	182	19.9269
(((((...............)))))	chr2:175979315-175979590(-)$1	1	110	135	20.2200
((((((.............))))))	chr9:117359855-117360169(+)$1	1	254	279	22.4599
..((((...........))))...)	chr1:70716369-70716657(+)$1	1	139	164	19.7555
..(((................))).	chr16:89356956-89357261(-)$1	1	88	113	20.9998
((((((............)))))).	chr11:129997584-129997834(+)$1	1	185	210	22.0242
...(((...........))))))))	chr3:187447166-187447450(-)$1	1	249	274	19.9129
.((((((............))))))	chr14:31869587-31869819(-)$1	1	17	42	21.8359
..((...............))...)	chr17:65821701-65822026(+)$1	1	111	136	19.8588
..(((..............))).))	chr1:6257634-6257920(-)$1	1	39	64	24.3044
(((((............))))).))	chr6:136588126-136588413(-)$1	1	23	48	21.7685
(((((...............)))))	chr10:93756170-93756418(+)$1	1	136	161	20.4868
(((((..............))))))	chr3:41265916-41266172(+)$1	1	207	232	23.5354
(((((..............)))))(	chr17:16042307-16042564(-)$1	1	169	194	23.6703
(((((..............))))))	chr1:92195310-92195572(-)$1	1	51	76	23.5354
(((((...............)))))	chr3:187442677-187442925(-)$1	1	28	53	19.9464
((.((..............)).)))	chr17:62500021-62500306(-)$1	1	58	83	23.5372
.((((............)))).(((	chr7:155534552-155534835(+)$1	1	33	58	18.6466
..(((...............)))..	chr17:40265659-40265907(-)$1	1	17	42	18.9985
(.((((............)))).))	chr2:216229554-216229796(-)$1	1	100	125	22.1597
(((((..............))))).	chr17:77073686-77073931(+)$1	1	91	116	23.7260
((.(.............).))).))	chr2:242606093-242606350(+)$1	1	94	119	21.1434
(.(((..............)))..)	chr11:129979373-129979597(+)$1	1	9	34	23.9592
.((((((............))))))	chrX:30737480-30737745(+)$1	1	93	118	20.8559
(((((.............)))))).	chr6:56401476-56401836(-)$1	1	60	85	22.2630
(((((..............))))))	chr6:56391142-56391415(-)$1	1	164	189	23.5354
(((((...............)))))	chr2:39583325-39583581(-)$1	1	55	80	19.9464
(..((..............))..))	chr2:62991389-62991596(+)$1	1	27	52	22.6204
((.((((...........)))).))	chr12:46758333-46758581(-)$1	1	31	56	18.7973
(((((.............)))))))	chr3:142761857-142762211(+)$1	1	273	298	22.3520
.(((((...........))))).))	chr12:56493629-56493914(+)$1	1	116	141	19.9640
(((((..............))))))	chr14:24607303-24607543(+)$1	1	27	52	23.7965
...((.............))...))	chr2:242206153-242206421(-)$1	1	194	219	22.5062
..((((.............))))..	chr2:71653750-71654011(+)$1	1	133	158	21.1511
.(((((.............))))).	chr12:132248998-132249304(+)$1	1	138	163	21.0167
.((((((............))))))	chr17:72205841-72206085(+)$1	1	7	32	20.8559
..((...............))..))	chr7:155537661-155537999(+)$1	1	165	190	19.3445
..(((((............))))).	chr20:34292305-34292550(-)$1	1	92	117	19.2113
(((((...............)))))	chr19:13888867-13889153(+)$1	1	172	197	19.9464
..(((..............)))..)	chr17:66521791-66522069(+)$1	1	172	197	24.1194
((.((..............)).)))	chr17:62500106-62500326(-)$1	1	78	103	23.5372
..(.((...........)).)..).	chr16:89350204-89350477(-)$1	1	177	202	19.2110

#PSSM
e : 0.16	f : 0.15	" : 0.11	: : 0.10	i : 0.06	! : 0.06	g : 0.06	c : 0.05	= : 0.05	$ : 0.05	d : 0.03	h : 0.01	[ : 0.01	# : 0.01	b : 0.01	
f : 0.20	e : 0.18	" : 0.10	! : 0.08	[ : 0.08	i : 0.06	= : 0.05	$ : 0.05	g : 0.05	c : 0.03	d : 0.03	h : 0.01	# : 0.01	: : 0.01	
e : 0.20	f : 0.20	c : 0.13	d : 0.11	[ : 0.08	= : 0.05	g : 0.05	" : 0.03	b : 0.03	$ : 0.01	h : 0.01	i : 0.01	! : 0.01	a : 0.01	
e : 0.20	f : 0.20	b : 0.13	c : 0.13	d : 0.13	= : 0.05	g : 0.05	[ : 0.03	h : 0.01	i : 0.01	a : 0.01	
f : 0.20	e : 0.18	b : 0.13	c : 0.13	d : 0.13	= : 0.05	g : 0.05	x : 0.03	[ : 0.01	h : 0.01	i : 0.01	v : 0.01	
w : 0.30	x : 0.16	d : 0.11	v : 0.08	f : 0.08	e : 0.06	b : 0.03	= : 0.03	c : 0.03	u : 0.03	h : 0.01	y : 0.01	
w : 0.30	v : 0.20	x : 0.16	u : 0.10	t : 0.06	f : 0.05	= : 0.03	c : 0.01	y : 0.01	d : 0.01	e : 0.01	
w : 0.30	v : 0.20	u : 0.18	x : 0.16	t : 0.08	= : 0.01	c : 0.01	y : 0.01	
w : 0.30	v : 0.20	u : 0.18	x : 0.16	t : 0.11	y : 0.01	
w : 0.30	v : 0.20	u : 0.18	x : 0.16	t : 0.11	y : 0.01	
w : 0.30	v : 0.20	u : 0.18	x : 0.16	t : 0.11	y : 0.01	
w : 0.30	v : 0.20	u : 0.18	x : 0.16	t : 0.11	y : 0.01	
w : 0.30	v : 0.20	u : 0.18	x : 0.16	t : 0.11	y : 0.01	
w : 0.30	v : 0.20	u : 0.18	x : 0.16	t : 0.11	y : 0.01	
w : 0.30	v : 0.20	u : 0.18	x : 0.16	t : 0.11	y : 0.01	
w : 0.30	v : 0.20	u : 0.18	x : 0.16	t : 0.11	y : 0.01	
w : 0.30	v : 0.20	u : 0.18	x : 0.16	t : 0.11	y : 0.01	
w : 0.30	v : 0.18	x : 0.16	u : 0.15	t : 0.05	d : 0.03	e : 0.03	y : 0.01	c : 0.01	a : 0.01	b : 0.01	
w : 0.30	x : 0.16	v : 0.11	d : 0.10	u : 0.08	t : 0.03	f : 0.03	e : 0.03	b : 0.03	i : 0.01	y : 0.01	c : 0.01	] : 0.01	g : 0.01	
f : 0.16	b : 0.15	e : 0.13	c : 0.13	x : 0.13	d : 0.13	= : 0.03	g : 0.03	h : 0.01	i : 0.01	y : 0.01	] : 0.01	
f : 0.20	e : 0.18	d : 0.15	b : 0.13	c : 0.13	= : 0.05	g : 0.05	h : 0.01	i : 0.01	y : 0.01	3 : 0.01	a : 0.01	
f : 0.20	e : 0.18	c : 0.16	d : 0.11	= : 0.05	] : 0.05	g : 0.05	3 : 0.05	2 : 0.05	5 : 0.01	h : 0.01	i : 0.01	: : 0.01	
f : 0.20	] : 0.16	e : 0.15	2 : 0.10	i : 0.06	d : 0.06	c : 0.05	= : 0.05	g : 0.05	3 : 0.05	5 : 0.01	h : 0.01	
e : 0.22	f : 0.22	d : 0.11	c : 0.06	i : 0.06	= : 0.05	2 : 0.05	g : 0.05	5 : 0.03	3 : 0.03	8 : 0.01	h : 0.01	b : 0.01	6 : 0.01	a : 0.01	
f : 0.18	e : 0.15	d : 0.11	i : 0.08	g : 0.08	: : 0.06	= : 0.06	] : 0.06	c : 0.05	5 : 0.03	8 : 0.01	h : 0.01	3 : 0.01	b : 0.01	6 : 0.01	

#score	1270.2814809300264
#seq	59
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_UTR_m2_run1.txt

#BEAR
cccvvvvvvvvvvvvvccc:BB	chr2:130932350-130932588(-)$1	238	27	49	20.3703
gggvvvvvvvvvvvvvgggggg	chr4:57244173-57244421(-)$1	248	222	244	23.1970
ffwwwwwwwwwwwwwwffffff	chr17:34869094-34869379(-)$1	285	72	94	21.4654
cccvvvvvvvvvvvvvccc::e	chr3:11350425-11350735(+)$1	310	12	34	21.2643
gggggtttttttttttgggggg	chr19:47228433-47228701(-)$1	268	220	242	21.7104
eewwwwwwwwwwwwwweeeee]	chr6:4061911-4062136(+)$1	225	37	59	21.6596
hhhhuuuuuuuuuuuuhhhhhh	chr3:140682130-140682411(+)$1	281	228	250	21.1358
eebbuuuuuuuuuuuubb]eee	chr9:128103452-128103700(+)$1	248	157	179	22.0616
cccvvvvvvvvvvvvvccc22d	chr12:112479679-112479954(-)$1	275	169	191	22.8106
ffffuuuuuuuuuuuuffffff	chr3:119153408-119153724(-)$1	316	127	149	22.5909
fffvvvvvvvvvvvvvffffff	chr1:54395453-54395676(-)$1	223	64	86	22.6653
dddduuuuuuuuuuuudddd]h	chr15:91423171-91423406(+)$1	235	80	102	22.6342
fyyyyyyyyyyyyyyyyfffff	chr3:49999991-50000259(+)$1	268	70	92	20.0492
ffffuuuuuuuuuuuuffffff	chr17:74053332-74053601(-)$1	269	216	238	22.5909
yyyyyyyyyyyyyyyyeeeeef	chr2:11923953-11924240(+)$1	287	175	197	19.9384
eeeeettttttttttteeeee:	chr11:77635486-77635762(-)$1	276	251	273	20.5347
###bbtttttttttttbbdddd	chr10:52103084-52103340(-)$1	256	103	125	20.2462
gggggtttttttttttgggggg	chr11:68358050-68358389(+)$1	339	2	24	21.7104
ddddwwwwwwwwwwwwwwdddd	chr4:76894216-76894573(-)$1	357	293	315	20.4708
hhhvvvvvvvvvvvvvhhhhhh	chr2:61753157-61753398(-)$1	241	135	157	21.4312
ffffftttttttttttffffff	chr9:140347316-140347564(-)$1	248	99	121	21.2847
gggguuuuuuuuuuuugggggg	chr3:142137072-142137368(-)$1	296	179	201	23.1427
iiiiitttttttttttiiiiii	chr2:183604922-183605187(+)$1	265	138	160	21.4556
c[bbuuuuuuuuuuuubb]ccc	chr1:97278470-97278733(+)$1	263	129	151	22.1204
ffffftttttttttttffffff	chr2:135677291-135677643(+)$1	352	2	24	21.2847
dddvvvvvvvvvvvvvdddd44	chr12:56510352-56510582(+)$1	230	25	47	22.7618
eeeeuuuuuuuuuuuueeeee4	chr3:41280735-41280991(+)$1	256	91	113	22.7053
ecccuuuuuuuuuuuuccc333	chr8:141569318-141569603(-)$1	285	93	115	23.4346
iiiiitttttttttttiiiiii	chr3:138452084-138452310(-)$1	226	37	59	21.4556
fffvvvvvvvvvvvvvffffff	chr7:23385311-23385671(-)$1	360	17	39	22.6653
iiiwwwwwwwwwwwwwwiiiii	chr11:75201133-75201392(-)$1	259	106	128	21.7927
dddduuuuuuuuuuuudddd]c	chr5:72864095-72864428(+)$1	333	63	85	22.8565
ffffftttttttttttffffff	chr12:56742999-56743231(-)$1	232	78	100	21.2847
ddddtttttttttttddddeee	chr15:43477794-43478136(+)$1	342	160	182	21.0826
yyyyyyyyyyyyyyyybbgggg	chr3:47030978-47031239(+)$1	261	166	188	19.7665
dddvvvvvvvvvvvvvddddff	chr5:179044361-179044619(-)$1	258	184	206	22.8402
eeeeuuuuuuuuuuuueeeee:	chr19:19105690-19105932(-)$1	242	172	194	21.8633
dbbwwwwwwwwwwwwwwbb]dd	chr9:75766723-75766973(+)$1	250	191	213	20.4782
gggguuuuuuuuuuuugggggg	chr6:41038710-41038978(-)$1	268	94	116	23.1427
dddduuuuuuuuuuuudddd::	chr9:132889735-132889986(+)$1	251	50	72	20.9648
ffffuuuuuuuuuuuuffffff	chr22:47095049-47095313(-)$1	264	235	257	22.5909
cccvvvvvvvvvvvvvccc22g	chr14:56120164-56120475(+)$1	311	216	238	23.0182
gggvvvvvvvvvvvvvgggggg	chr8:95879296-95879553(+)$1	257	23	45	23.1970
[cccuuuuuuuuuuuucccccc	chr9:100088820-100089140(+)$1	320	232	254	23.2457
ddwwwwwwwwwwwwwwdddd]g	chr3:141712191-141712506(-)$1	315	60	82	21.7238
ccwwwwwwwwwwwwwwccc888	chr6:136581991-136582249(-)$1	258	125	147	20.5724
eeeeuuuuuuuuuuuueeeee2	chr6:24408548-24408806(+)$1	258	146	168	22.5750
!cccuuuuuuuuuuuuccc22e	chr1:76256908-76257142(+)$1	234	36	58	22.9299
====uuuuuuuuuuuu======	chr9:95061020-95061290(-)$1	270	76	98	23.1844
eeeeuuuuuuuuuuuueeeeeB	chr3:195791058-195791310(-)$1	252	176	198	21.8461
yyyyyyyyyyyyyyyydddd44	chr16:11849956-11850224(-)$1	268	13	35	19.8357
cccwwwwwwwwwwwwwwcccee	chr11:473856-474194(+)$1	338	202	224	21.8155
eeewwwwwwwwwwwwwweeeee	chr13:50571696-50571968(+)$1	272	226	248	21.5284
hhhhuuuuuuuuuuuuhhhhhh	chr4:48603869-48604154(-)$1	285	173	195	21.1358
gyyyyyyyyyyyyyyyyggggg	chr19:49605480-49605715(+)$1	235	81	103	20.3830
ffffuuuuuuuuuuuuffffff	chr6:31654957-31655238(-)$1	281	17	39	22.5909
ddddvvvvvvvvvvvvvdddd]	chr5:137275716-137276013(-)$1	297	205	227	22.0958
dddduuuuuuuuuuuudddd22	chr3:51978447-51978748(+)$1	301	92	114	22.4874
ff!!attttttttttta]ffff	chr14:23791042-23791284(+)$1	242	131	153	21.9991
dddvvvvvvvvvvvvvdddd:f	chr7:154739459-154739732(-)$1	273	156	178	21.9381
ddddtttttttttttdddd22f	chrX:135955211-135955458(-)$1	247	56	78	20.8870
dddvvvvvvvvvvvvvddddGG	chr21:33975266-33975544(-)$1	278	196	218	21.9864
cccvvvvvvvvvvvvvcccbbc	chr11:63714268-63714590(+)$1	322	184	206	22.7159
eeeeuuuuuuuuuuuueeeee:	chr18:13057645-13057947(+)$1	302	11	33	21.8633
d[bbwwwwwwwwwwwwwwbbdd	chr17:46925392-46925670(+)$1	278	179	201	19.7176
[cccuuuuuuuuuuuuccc]bb	chr12:57911319-57911568(-)$1	249	96	118	22.8553
ddddtttttttttttdddd444	chr19:9728495-9728952(-)$1	457	275	297	21.0055

#otherMatches

#Seq PSSM
GCUGACUCUAUAAAUAAGCCCU	chr2:130932350-130932588(-)$1	238	27	49	20.3703
aggaguucaagaucagccuggc	chr4:57244173-57244421(-)$1	248	222	244	23.1970
GGCAUUGACACCCCUACCCAGA	chr17:34869094-34869379(-)$1	285	72	94	21.4654
UGCUUUUCUUCUUCUUGCAGAU	chr3:11350425-11350735(+)$1	310	12	34	21.2643
GGGGCUCUGAGUCCCCGCCCCC	chr19:47228433-47228701(-)$1	268	220	242	21.7104
ACCUUUUAUUUCUUUUGUAAAU	chr6:4061911-4062136(+)$1	225	37	59	21.6596
AAUUACACUAUAAAUAAGUUAU	chr3:140682130-140682411(+)$1	281	228	250	21.1358
AGAGCCAAUGUCUCAACUCCUC	chr9:128103452-128103700(+)$1	248	157	179	22.0616
GAAGUUCUUUCCCCUAUUCCCA	chr12:112479679-112479954(-)$1	275	169	191	22.8106
UUAUUUAUUUUCAAACAUAAGC	chr3:119153408-119153724(-)$1	316	127	149	22.5909
AAGGCAUAUAUGUAAACUUUUG	chr1:54395453-54395676(-)$1	223	64	86	22.6653
ACCUGAGAGUCGCAGGGGGUGC	chr15:91423171-91423406(+)$1	235	80	102	22.6342
UUGAUAAAAAGAGAUGUGGGGG	chr3:49999991-50000259(+)$1	268	70	92	20.0492
AACAAACUUUUAAUGCUGUUUU	chr17:74053332-74053601(-)$1	269	216	238	22.5909
GAUUAGAAAGUGUGCAAGACAg	chr2:11923953-11924240(+)$1	287	175	197	19.9384
GAAAUAAAUUAAUUAGAUUUCC	chr11:77635486-77635762(-)$1	276	251	273	20.5347
AGCUCUAAGAUUCAAUGAUUAU	chr10:52103084-52103340(-)$1	256	103	125	20.2462
AAACUUUCAUAAAUACGGUUUC	chr11:68358050-68358389(+)$1	339	2	24	21.7104
AUAAUUAAUAAAACAGAUUUAU	chr4:76894216-76894573(-)$1	357	293	315	20.4708
UAUUCAGAGAUUAAACAUAACA	chr2:61753157-61753398(-)$1	241	135	157	21.4312
GACUCCGCCCCAACCCGAGUCC	chr9:140347316-140347564(-)$1	248	99	121	21.2847
GUAUUAAUUCUGACUUGUAUUA	chr3:142137072-142137368(-)$1	296	179	201	23.1427
GGAAGUAAUACAUAAUCUUCCA	chr2:183604922-183605187(+)$1	265	138	160	21.4556
AGAGGAUCUACGAACACUGUUC	chr1:97278470-97278733(+)$1	263	129	151	22.1204
GAAAAGAACCUGGGAAUUUUCC	chr2:135677291-135677643(+)$1	352	2	24	21.2847
GGCGCUCCAUUAAAUAGCCGUA	chr12:56510352-56510582(+)$1	230	25	47	22.7618
CCUGUAAAUCAUCCUUUAGGUA	chr3:41280735-41280991(+)$1	256	91	113	22.7053
UACCAAAGAAAUUAAAGGUAAU	chr8:141569318-141569603(-)$1	285	93	115	23.4346
GGGAAAAUAACAACCCUUUCCA	chr3:138452084-138452310(-)$1	226	37	59	21.4556
AGCUCAUAAUAACUUUGUUGGA	chr7:23385311-23385671(-)$1	360	17	39	22.6653
UCCAGGUAAAGAGAAAAGGAGG	chr11:75201133-75201392(-)$1	259	106	128	21.7927
AUAAUAUUAAAUUUCUUUAUUU	chr5:72864095-72864428(+)$1	333	63	85	22.8565
AGGGGAUAAACAGAAGCCUCUU	chr12:56742999-56743231(-)$1	232	78	100	21.2847
ggcUCCGCUUACCUCAGCUUUU	chr15:43477794-43478136(+)$1	342	160	182	21.0826
UCCUUGAUCCUGCCAUACACAG	chr3:47030978-47031239(+)$1	261	166	188	19.7665
GGAUAUAUGAGAAGUUUCCUCU	chr5:179044361-179044619(-)$1	258	184	206	22.8402
UGGUGUAGAUUUUUUAACCAGC	chr19:19105690-19105932(-)$1	242	172	194	21.8633
GCUUCUACAGGAUUUAUGGUUA	chr9:75766723-75766973(+)$1	250	191	213	20.4782
ACUUUUAAAUCAACGUGAGUUU	chr6:41038710-41038978(-)$1	268	94	116	23.1427
AGGAUCAUUGCAUUUCUCCUCA	chr9:132889735-132889986(+)$1	251	50	72	20.9648
ccucaugaaaugugccggggcc	chr22:47095049-47095313(-)$1	264	235	257	22.5909
GAAUAUAAUGAUGAGUUUCCUG	chr14:56120164-56120475(+)$1	311	216	238	23.0182
AUAAAUAUACAUACACUGUUUA	chr8:95879296-95879553(+)$1	257	23	45	23.1970
AUGAAAAUUGUGCCUCUCACUU	chr9:100088820-100089140(+)$1	320	232	254	23.2457
UAUCUUUUUUCCUUUUUAGUGA	chr3:141712191-141712506(-)$1	315	60	82	21.7238
GAAAUUUUGUUUUAAGUCUUCA	chr6:136581991-136582249(-)$1	258	125	147	20.5724
CAUUUUUUAAACAUUUAAUGAG	chr6:24408548-24408806(+)$1	258	146	168	22.5750
UUGAUUUGAUCUAUUUUUAUUG	chr1:76256908-76257142(+)$1	234	36	58	22.9299
GAGACCACUAGAUUUUUCUUUU	chr9:95061020-95061290(-)$1	270	76	98	23.1844
CAGUUCUAGAUGUUAUACUGUG	chr3:195791058-195791310(-)$1	252	176	198	21.8461
AAUUUUACGAACUAUGGCUCAA	chr16:11849956-11850224(-)$1	268	13	35	19.8357
GAGUGUCCUGUCCUCCCCUCCG	chr11:473856-474194(+)$1	338	202	224	21.8155
GUUAUCUUUUUUUUUUAAACAC	chr13:50571696-50571968(+)$1	272	226	248	21.5284
GCAUAUAAAUUGAACAGUGCAU	chr4:48603869-48604154(-)$1	285	173	195	21.1358
AUGGCCCUUUCCUUGUUUGGGU	chr19:49605480-49605715(+)$1	235	81	103	20.3830
AGGGGGACUGGGGAUACCCUAU	chr6:31654957-31655238(-)$1	281	17	39	22.5909
AAUCUCAUUUUGUACUUGGUUG	chr5:137275716-137276013(-)$1	297	205	227	22.0958
GUACACACUUAUCGAAGUACAG	chr3:51978447-51978748(+)$1	301	92	114	22.4874
UCAGCGAUCACUACAAGGGGCC	chr14:23791042-23791284(+)$1	242	131	153	21.9991
GCAUAACACACGGACCUGCUCA	chr7:154739459-154739732(-)$1	273	156	178	21.9381
AAGCAAAGCAAACUAGUUUUUC	chrX:135955211-135955458(-)$1	247	56	78	20.8870
GGUUUAAACUAAAAAUAUCCUC	chr21:33975266-33975544(-)$1	278	196	218	21.9864
UUCAAGAAAUAUGAUAGAAACG	chr11:63714268-63714590(+)$1	322	184	206	22.7159
CAGUGUGCUUAAUCCAACUGAC	chr18:13057645-13057947(+)$1	302	11	33	21.8633
GACUAAUUAAUUCCCUUCAGCU	chr17:46925392-46925670(+)$1	278	179	201	19.7176
CUUUUCCAAAAAUUUuaaacgg	chr12:57911319-57911568(-)$1	249	96	118	22.8553
UUUCUUAGAGCAAAUGAAGCCU	chr19:9728495-9728952(-)$1	457	275	297	21.0055

#DB
(((.............))).((	chr2:130932350-130932588(-)$1	1	27	49	20.3703
(((.............))))))	chr4:57244173-57244421(-)$1	1	222	244	23.1970
((..............))))))	chr17:34869094-34869379(-)$1	1	72	94	21.4654
(((.............)))..(	chr3:11350425-11350735(+)$1	1	12	34	21.2643
(((((...........))))))	chr19:47228433-47228701(-)$1	1	220	242	21.7104
((..............))))).	chr6:4061911-4062136(+)$1	1	37	59	21.6596
((((............))))))	chr3:140682130-140682411(+)$1	1	228	250	21.1358
((((............)).)))	chr9:128103452-128103700(+)$1	1	157	179	22.0616
(((.............)))..)	chr12:112479679-112479954(-)$1	1	169	191	22.8106
((((............))))))	chr3:119153408-119153724(-)$1	1	127	149	22.5909
(((.............))))))	chr1:54395453-54395676(-)$1	1	64	86	22.6653
((((............)))).)	chr15:91423171-91423406(+)$1	1	80	102	22.6342
(................)))))	chr3:49999991-50000259(+)$1	1	70	92	20.0492
((((............))))))	chr17:74053332-74053601(-)$1	1	216	238	22.5909
................)))))(	chr2:11923953-11924240(+)$1	1	175	197	19.9384
(((((...........))))).	chr11:77635486-77635762(-)$1	1	251	273	20.5347
...((...........))))))	chr10:52103084-52103340(-)$1	1	103	125	20.2462
(((((...........))))))	chr11:68358050-68358389(+)$1	1	2	24	21.7104
((((..............))))	chr4:76894216-76894573(-)$1	1	293	315	20.4708
(((.............))))))	chr2:61753157-61753398(-)$1	1	135	157	21.4312
(((((...........))))))	chr9:140347316-140347564(-)$1	1	99	121	21.2847
((((............))))))	chr3:142137072-142137368(-)$1	1	179	201	23.1427
(((((...........))))))	chr2:183604922-183605187(+)$1	1	138	160	21.4556
(.((............)).)))	chr1:97278470-97278733(+)$1	1	129	151	22.1204
(((((...........))))))	chr2:135677291-135677643(+)$1	1	2	24	21.2847
(((.............))))..	chr12:56510352-56510582(+)$1	1	25	47	22.7618
((((............))))).	chr3:41280735-41280991(+)$1	1	91	113	22.7053
((((............)))...	chr8:141569318-141569603(-)$1	1	93	115	23.4346
(((((...........))))))	chr3:138452084-138452310(-)$1	1	37	59	21.4556
(((.............))))))	chr7:23385311-23385671(-)$1	1	17	39	22.6653
(((..............)))))	chr11:75201133-75201392(-)$1	1	106	128	21.7927
((((............)))).)	chr5:72864095-72864428(+)$1	1	63	85	22.8565
(((((...........))))))	chr12:56742999-56743231(-)$1	1	78	100	21.2847
((((...........)))))))	chr15:43477794-43478136(+)$1	1	160	182	21.0826
................))))))	chr3:47030978-47031239(+)$1	1	166	188	19.7665
(((.............))))((	chr5:179044361-179044619(-)$1	1	184	206	22.8402
((((............))))).	chr19:19105690-19105932(-)$1	1	172	194	21.8633
(((..............)).))	chr9:75766723-75766973(+)$1	1	191	213	20.4782
((((............))))))	chr6:41038710-41038978(-)$1	1	94	116	23.1427
((((............))))..	chr9:132889735-132889986(+)$1	1	50	72	20.9648
((((............))))))	chr22:47095049-47095313(-)$1	1	235	257	22.5909
(((.............)))..)	chr14:56120164-56120475(+)$1	1	216	238	23.0182
(((.............))))))	chr8:95879296-95879553(+)$1	1	23	45	23.1970
.(((............))))))	chr9:100088820-100089140(+)$1	1	232	254	23.2457
((..............)))).)	chr3:141712191-141712506(-)$1	1	60	82	21.7238
((..............)))...	chr6:136581991-136582249(-)$1	1	125	147	20.5724
((((............))))).	chr6:24408548-24408806(+)$1	1	146	168	22.5750
.(((............)))..)	chr1:76256908-76257142(+)$1	1	36	58	22.9299
((((............))))))	chr9:95061020-95061290(-)$1	1	76	98	23.1844
((((............))))))	chr3:195791058-195791310(-)$1	1	176	198	21.8461
................))))..	chr16:11849956-11850224(-)$1	1	13	35	19.8357
(((..............)))))	chr11:473856-474194(+)$1	1	202	224	21.8155
(((..............)))))	chr13:50571696-50571968(+)$1	1	226	248	21.5284
((((............))))))	chr4:48603869-48604154(-)$1	1	173	195	21.1358
(................)))))	chr19:49605480-49605715(+)$1	1	81	103	20.3830
((((............))))))	chr6:31654957-31655238(-)$1	1	17	39	22.5909
((((.............)))).	chr5:137275716-137276013(-)$1	1	205	227	22.0958
((((............))))..	chr3:51978447-51978748(+)$1	1	92	114	22.4874
((..(...........).))))	chr14:23791042-23791284(+)$1	1	131	153	21.9991
(((.............)))).(	chr7:154739459-154739732(-)$1	1	156	178	21.9381
((((...........))))..)	chrX:135955211-135955458(-)$1	1	56	78	20.8870
(((.............))))))	chr21:33975266-33975544(-)$1	1	196	218	21.9864
(((.............))))))	chr11:63714268-63714590(+)$1	1	184	206	22.7159
((((............))))).	chr18:13057645-13057947(+)$1	1	11	33	21.8633
(.((..............))))	chr17:46925392-46925670(+)$1	1	179	201	19.7176
.(((............))).))	chr12:57911319-57911568(-)$1	1	96	118	22.8553
((((...........))))...	chr19:9728495-9728952(-)$1	1	275	297	21.0055

#PSSM
d : 0.23	f : 0.17	e : 0.14	c : 0.11	g : 0.10	h : 0.04	y : 0.04	i : 0.04	[ : 0.02	# : 0.01	! : 0.01	= : 0.01	
d : 0.20	c : 0.16	f : 0.16	e : 0.13	g : 0.08	y : 0.07	h : 0.04	i : 0.04	[ : 0.02	# : 0.01	b : 0.01	= : 0.01	
d : 0.19	c : 0.14	f : 0.13	e : 0.10	g : 0.08	y : 0.07	w : 0.05	b : 0.05	h : 0.04	i : 0.04	# : 0.01	= : 0.01	! : 0.01	
v : 0.20	d : 0.13	w : 0.11	f : 0.10	e : 0.08	y : 0.07	g : 0.05	b : 0.05	c : 0.05	h : 0.02	i : 0.02	= : 0.01	! : 0.01	
u : 0.35	v : 0.22	w : 0.14	y : 0.07	f : 0.04	t : 0.04	g : 0.02	i : 0.02	e : 0.01	b : 0.01	a : 0.01	
u : 0.35	v : 0.22	t : 0.19	w : 0.14	y : 0.07	
u : 0.35	v : 0.22	t : 0.19	w : 0.14	y : 0.07	
u : 0.35	v : 0.22	t : 0.19	w : 0.14	y : 0.07	
u : 0.35	v : 0.22	t : 0.19	w : 0.14	y : 0.07	
u : 0.35	v : 0.22	t : 0.19	w : 0.14	y : 0.07	
u : 0.35	v : 0.22	t : 0.19	w : 0.14	y : 0.07	
u : 0.35	v : 0.22	t : 0.19	w : 0.14	y : 0.07	
u : 0.35	v : 0.22	t : 0.19	w : 0.14	y : 0.07	
u : 0.35	v : 0.22	t : 0.19	w : 0.14	y : 0.07	
u : 0.35	v : 0.22	t : 0.19	w : 0.14	y : 0.07	
u : 0.35	v : 0.22	w : 0.14	t : 0.14	y : 0.07	d : 0.04	
d : 0.19	c : 0.14	f : 0.14	e : 0.11	g : 0.08	w : 0.08	b : 0.05	h : 0.04	y : 0.02	i : 0.02	= : 0.01	v : 0.01	a : 0.01	
d : 0.20	c : 0.16	f : 0.16	e : 0.13	g : 0.10	b : 0.07	h : 0.04	i : 0.04	w : 0.02	= : 0.01	] : 0.01	
d : 0.23	f : 0.17	c : 0.16	e : 0.13	g : 0.11	h : 0.04	i : 0.04	] : 0.02	b : 0.02	= : 0.01	
d : 0.19	f : 0.17	e : 0.16	g : 0.11	2 : 0.05	h : 0.04	i : 0.04	c : 0.04	: : 0.02	] : 0.02	b : 0.02	3 : 0.01	8 : 0.01	= : 0.01	4 : 0.01	
f : 0.19	e : 0.17	g : 0.11	2 : 0.07	d : 0.07	: : 0.04	h : 0.04	] : 0.04	i : 0.04	4 : 0.04	c : 0.02	b : 0.02	B : 0.01	3 : 0.01	8 : 0.01	= : 0.01	G : 0.01	
f : 0.23	g : 0.14	e : 0.08	d : 0.07	h : 0.05	: : 0.05	c : 0.05	4 : 0.05	i : 0.04	B : 0.02	] : 0.02	2 : 0.02	3 : 0.01	8 : 0.01	= : 0.01	G : 0.01	b : 0.01	

#score	1460.6475786018452
#seq	67
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_UTR_m2_run1.txt

#BEAR
[bb[dddd!!ddddmmmmdddd]dddd]bb]	chrX:152953830-152954113(+)$1	283	167	198	14.0912
:bb!!bb!!ddddmmmmdddd333bb22bb:	chr2:70314573-70314940(+)$1	367	85	116	12.5660
gggggggcccaccclllccc]a]ccc]gggg	chr10:17271230-17271578(+)$1	348	232	263	11.5341
b####ccc!!ddddllldddd22ccc333bb	chr6:37138064-37138340(+)$1	276	190	221	16.0298
dd[dddd"""ddddmmmmdddd]dddddddd	chr11:62609020-62609227(-)$1	207	59	90	12.9159
dddd[dddd!!ccclllccc22dddd]dddd	chr11:122929526-122929781(-)$1	255	181	212	11.4128
$$$$$a[eeeee[ammmma]eeeeea333dd	chr19:41111295-41111612(+)$1	317	265	296	11.2323
bb!!eeeee[cccooooooccc]eeeee]bb	chr20:57466610-57466874(+)$1	264	58	89	11.4912
iiiiiiiiiddddmmmmdddd333iiiiiii	chr1:27022545-27022809(+)$1	264	35	66	12.8648

#otherMatches

#Seq PSSM
accccggcccggccgugcggcccgccgAGGC	chrX:152953830-152954113(+)$1	283	167	198	14.0912
cgcccgcccgccgcucccggccccgcucgcc	chr2:70314573-70314940(+)$1	367	85	116	12.5660
GUUCGGCGGCCCGGGCACCGCGAGCCGGCCG	chr10:17271230-17271578(+)$1	348	232	263	11.5341
ccacagccccagGCAUAGCCUUCGGCACAGC	chr6:37138064-37138340(+)$1	276	190	221	16.0298
agauggaauaggagcuugcuccguccacucc	chr11:62609020-62609227(-)$1	207	59	90	12.9159
GGACCCUAGCACUGUCACAGACCUGGAGUCC	chr11:122929526-122929781(-)$1	255	181	212	11.4128
GAGAGGAGGCCCGUGGGGAGGGGCCCGGAGC	chr19:41111295-41111612(+)$1	317	265	296	11.2323
gcccgcgcccggcccgcccgcccggcgcugc	chr20:57466610-57466874(+)$1	264	58	89	11.4912
CUCAUUCCCAGGCAAGGGCUUGGGGGGAAUG	chr1:27022545-27022809(+)$1	264	35	66	12.8648

#DB
.((.((((..((((....)))).)))).)).	chrX:152953830-152954113(+)$1	1	167	198	14.0912
.((..((..((((....))))...))..)).	chr2:70314573-70314940(+)$1	1	85	116	12.5660
((((((((((((((...))).).))).))))	chr10:17271230-17271578(+)$1	1	232	263	11.5341
(....(((..((((...))))..)))...))	chr6:37138064-37138340(+)$1	1	190	221	16.0298
((.((((...((((....)))).))))))))	chr11:62609020-62609227(-)$1	1	59	90	12.9159
((((.((((..(((...)))..)))).))))	chr11:122929526-122929781(-)$1	1	181	212	11.4128
.....(.(((((.(....).))))))...))	chr19:41111295-41111612(+)$1	1	265	296	11.2323
((..(((((.(((......))).))))).))	chr20:57466610-57466874(+)$1	1	58	89	11.4912
(((((((((((((....))))...)))))))	chr1:27022545-27022809(+)$1	1	35	66	12.8648

#PSSM
b : 0.22	d : 0.22	[ : 0.11	: : 0.11	g : 0.11	$ : 0.11	i : 0.11	
b : 0.33	d : 0.22	g : 0.11	# : 0.11	$ : 0.11	i : 0.11	
b : 0.22	g : 0.11	# : 0.11	[ : 0.11	d : 0.11	$ : 0.11	! : 0.11	i : 0.11	
! : 0.22	d : 0.22	[ : 0.11	g : 0.11	# : 0.11	$ : 0.11	i : 0.11	
d : 0.22	! : 0.11	g : 0.11	# : 0.11	[ : 0.11	$ : 0.11	e : 0.11	i : 0.11	
d : 0.33	b : 0.11	g : 0.11	c : 0.11	a : 0.11	e : 0.11	i : 0.11	
d : 0.33	b : 0.11	g : 0.11	c : 0.11	[ : 0.11	e : 0.11	i : 0.11	
d : 0.22	c : 0.22	e : 0.22	! : 0.11	" : 0.11	i : 0.11	
! : 0.33	e : 0.22	c : 0.11	" : 0.11	d : 0.11	i : 0.11	
! : 0.33	d : 0.22	c : 0.11	" : 0.11	e : 0.11	[ : 0.11	
d : 0.55	a : 0.11	! : 0.11	e : 0.11	c : 0.11	
d : 0.55	c : 0.33	e : 0.11	
d : 0.55	c : 0.33	[ : 0.11	
d : 0.33	m : 0.22	c : 0.22	a : 0.11	o : 0.11	
m : 0.55	l : 0.33	o : 0.11	
m : 0.55	l : 0.33	o : 0.11	
m : 0.55	l : 0.33	o : 0.11	
m : 0.33	d : 0.33	c : 0.22	o : 0.11	
d : 0.55	c : 0.22	a : 0.11	o : 0.11	
d : 0.55	c : 0.33	] : 0.11	
d : 0.55	] : 0.11	2 : 0.11	e : 0.11	c : 0.11	
d : 0.22	3 : 0.22	2 : 0.22	a : 0.11	e : 0.11	c : 0.11	
] : 0.44	3 : 0.22	2 : 0.11	d : 0.11	e : 0.11	
d : 0.33	3 : 0.22	c : 0.22	e : 0.22	
d : 0.33	c : 0.22	e : 0.22	b : 0.11	i : 0.11	
d : 0.33	c : 0.22	b : 0.11	a : 0.11	e : 0.11	i : 0.11	
d : 0.22	] : 0.22	3 : 0.22	2 : 0.11	e : 0.11	i : 0.11	
3 : 0.22	d : 0.22	] : 0.11	2 : 0.11	g : 0.11	e : 0.11	i : 0.11	
b : 0.22	3 : 0.22	d : 0.22	g : 0.11	] : 0.11	i : 0.11	
b : 0.44	d : 0.33	g : 0.11	i : 0.11	
d : 0.33	b : 0.22	] : 0.11	: : 0.11	g : 0.11	i : 0.11	

#score	114.1384802740222
#seq	9
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_CDS_m1_run2.txt

#BEAR
c!!eeeee[a[ccc[bbmmmmbbccc]aeeeee]ccc22d	chr3:51422719-51422965(+)$1	246	166	206	15.0700
fffff"""dddd!!cccmmmmccc333dddd333ffffff	chr1:38273923-38274203(+)$1	280	162	202	13.7306
cc[a[ccc####bb[bbmmmmbb]bb4444ccc]a]ccc]	chr3:185542646-185542941(-)$1	295	19	59	18.0995
$$$ccc!!a!!ccc[bbmmmmbbccc22a22ccc22dddd	chr17:2203226-2203509(-)$1	283	127	167	15.9079
dddddddd[dddd!!bbmmmmbb22dddd333dddd]ddd	chr17:47841223-47841539(-)$1	316	233	273	14.2976
[a[ccc"""eeeee[aooooooa]eeeee22cccaccccc	chr3:50374570-50374902(-)$1	332	64	104	13.5540
!cccdddd####bb[bblllbbbb333dddd]ccc22ddd	chr20:43029878-43030133(+)$1	255	123	163	13.2342
ee[eeeee[bb"""cccmmmmccc333bb]eeeee]eeee	chr5:95297256-95297525(-)$1	269	39	79	12.8172
iii[bbccc[a[a[cccmmmmccc]a]a]ccc22bb]iii	chr9:79792464-79792729(+)$1	265	185	225	14.6602
bb[bb[a[cccccc[bbmmmmbb]ccc]ccc]a]bb]bba	chr19:56599444-56599693(-)$1	249	46	86	15.2317
dd!!accc####bb[bbmmmmbb]bb55555ccc]a333d	chr17:58469142-58469399(-)$1	257	82	122	14.9678
!!ccc!!bb[ccc[cccmmmmcccccc]bb22cccfffff	chr6:32157484-32157764(-)$1	280	129	169	14.1333
ddd####ccc!!eeeeeooooooeeeee4444ccc4444d	chr11:2154646-2154848(-)$1	202	116	156	13.6570
eee[a!!ccc!!eeeeemmmmeeeee22ccc22a]eeeee	chr11:2154351-2154552(-)$1	201	51	91	13.8837
gg!!a[eeeee[bb[bbmmmmbb]bb]eeeee]agggggg	chr6:48036283-48036526(-)$1	243	168	208	15.6006
gggggg[a[cccbb[bbmmmmbb]bb]ccc]a]ggggggg	chr15:42867757-42868041(+)$1	284	26	66	16.8090
ggggggg[ffffff[bbmmmmbb]ffffff22ggggggg4	chr1:155294924-155295226(+)$1	302	124	164	14.9746
ggggggg"""a[eeeeemmmmeeeee]a4444ggggggg:	chr17:7232365-7232629(-)$1	264	5	45	14.2649
[===========[a[bbmmmmbb]a===========]bb]	chr2:231902250-231902550(+)$1	300	34	74	17.5136
gggccc[ccc[cccccclllccc22ccc]cccccc]gggg	chr2:54197719-54197994(-)$1	275	107	147	13.5541
c!!dddd!!dddd!!bbmmmmbb22dddd4444ddddccc	chr8:145693805-145694065(+)$1	260	184	224	15.3605
ccc[ddddbbccc[cccmmmmcccccc]bb22ddddccc]	chr1:226032899-226033164(-)$1	265	123	163	12.8196
f!!ccc!!iiiiiiiiimmmmiiiiiiiii22ccc]ffff	chr11:58346514-58346902(+)$1	388	13	53	14.9091
!a"""dddd[ccc"""bblllbb333ccc]dddd4444a2	chr19:39440213-39440592(-)$1	379	13	53	13.7217
[dddd!!ffffffa[bbmmmmbb]a]ffffff]dddd]cc	chr16:448088-448333(+)$1	245	76	116	14.3428
a[bb[ccc!!ccc[ccclllccc]ccc4444ccc]bb]a:	chr5:138629666-138630028(+)$1	362	209	249	12.6876
fccc"""ccc!!eeeeeooooooeeeee4444ccc4444c	chr11:2154667-2154872(-)$1	205	140	180	14.1094
dddccc"""ccc[a!!ammmma22a]ccc22ccc333ddd	chr8:30669812-30670093(-)$1	281	45	85	15.1906
a!!dddd!!eeeeecccmmmmccc333eeeee]dddd]a]	chr16:22019503-22019805(+)$1	302	27	67	13.5187
[a!!dddd[bb[a[cccmmmmccc]abb]dddda]ccc]b	chr16:69419494-69419756(-)$1	262	88	128	13.2072
"a!!a!!agggggggbbmmmmbb]ggggggg]a22a22a2	chr10:101379902-101380206(-)$1	304	241	281	16.1294
d[ccc"""dddd!!cccmmmmccc22dddd333ccc]ddd	chr9:126692066-126692363(-)$1	297	212	252	14.4855
gggggggggggggg[bbmmmmbb]ggggggg]ggggggg:	chr2:220435318-220435568(-)$1	250	153	193	15.0637
""dddd"""a[a[bboooooobb]a]a333dddd333ccc	chr1:36788407-36788686(+)$1	279	106	146	13.8559
==========!!a[cccmmmmccc22a22===========	chr14:103568751-103569030(+)$1	279	20	60	16.1419
gg####ccc[gggggggmmmmggggggg]ccc4444gggg	chr20:35177510-35177776(-)$1	266	102	142	14.7536
iiiii[ccc"""bb[bbmmmmbb]bb333ccc22iiiiii	chr12:121416292-121416616(+)$1	324	218	258	17.6749
]eeeeebb[bb[bb[bbmmmmbb]bb]bb]bbiiiiiiii	chr16:69166299-69166541(-)$1	242	67	107	13.6115
dd####dddd!!a[cccooooooccc]a4444dddd333d	chr1:55352297-55352525(-)$1	228	13	53	13.9589
d[a[===========[bblllbb22===========22a]	chr17:37618164-37618425(+)$1	261	123	163	14.2910
dd!!accc####bb[bbmmmmbb]bb55555ccc]a333d	chr17:58469199-58469450(-)$1	251	133	173	14.9678
fccc"""ccc!!eeeeeooooooeeeee4444ccc4444c	chr11:2154648-2154854(-)$1	206	122	162	14.1094
bb[bb[ffffff[a[bbmmmmbb]a]ffffff]bb]bb]c	chr8:144672185-144672436(-)$1	251	102	142	13.0919
eee[a!!ccc!!eeeeemmmmeeeee22ccc22a]eeeee	chr11:2154331-2154540(-)$1	209	39	79	13.8837
[a[ccc[dddd####cccmmmmccc4444dddd]ccc]a]	chr17:30264226-30264479(+)$1	253	55	95	13.4821
d[ffffffccc[cccbbmmmmbb]cccccc]ffffffddd	chr19:46367578-46367860(+)$1	282	30	70	14.0539
cc[ccc[bb"""bb[bbmmmmbb]bb22bbccc]ccc]ff	chr2:231902452-231902690(+)$1	238	95	135	16.1485
ggggggccc[dddd[bbmmmmbb]ddddccc333gggggg	chrX:20284609-20284890(-)$1	281	29	69	15.9979
[ccc$$$$$eeeee[bbmmmmbb]eeeee22ccciiiiii	chr6:32157427-32157684(-)$1	257	90	130	15.6289
iiiiiccc[ccceeeeemmmmeeeee]cccccc4444iii	chr12:72056740-72057016(-)$1	276	62	102	14.2688
ff[ccc[cccbbeeeeemmmmeeeee]bb]ccc]ccc444	chr10:70101448-70101711(+)$1	263	126	166	13.1799
fccc"""ccc!!eeeeeooooooeeeee4444ccc4444c	chr11:2154655-2154858(-)$1	203	126	166	14.1094
[ggggggg!!ccc!!bbnnnnnbb22ccc4444ggggggg	chr22:24224479-24224750(+)$1	271	100	140	13.2855
bb[a[dddd!!bb!!bbmmmmbb22bb22dddd]a]bb22	chr4:39699790-39700053(+)$1	263	114	154	13.6149
eee[a!!ccc!!eeeeemmmmeeeee22ccc22a]eeeee	chr11:2154311-2154523(-)$1	212	22	62	13.8837
ggg[bb[a[a!!a[cccammmma]ccc]a]a]a]bb]ggg	chr22:20862357-20862671(+)$1	314	136	176	14.5691
ii[a[a"""ccc[cccmmmmccc]ccc333a]aiiiiiii	chr19:47987247-47987562(-)$1	315	96	136	15.3002
eeee[a!!a[a[bb[bbmmmmbb]bb]a]a]a]eeeee]c	chr19:36504885-36505229(-)$1	344	74	114	16.2812
dd[ccca[ffffff[bbmmmmbbffffff]a]ccc]dddd	chr22:31741469-31741715(-)$1	246	47	87	14.7165

#otherMatches

#Seq PSSM
GGGGCCGCGCUCCGUGACCGUUCUGGCGGCGGCGCUGAAC	chr3:51422719-51422965(+)$1	246	166	206	15.0700
GGCCCGGGCUCAGACUGGUCACGGGGGUGAGAGGGGGCCC	chr1:38273923-38274203(+)$1	280	162	202	13.7306
GGGCgggccgggccggccgcgguggggggagccaggcuga	chr3:185542646-185542941(-)$1	295	19	59	18.0995
AAGGGGAGGGGGUGAGGGAAACCCACGACGACCCAGCCCG	chr17:2203226-2203509(-)$1	283	127	167	15.9079
CCCCUUCCAGCUGCAGCAGCCGCACCAGCGCCGGGACGGG	chr17:47841223-47841539(-)$1	316	233	273	14.2976
ACACUGACACGCGUACACGCACGCACGCGACCGGGGCGGU	chr3:50374570-50374902(-)$1	332	64	104	13.5540
AGGCAGGGAGAAUGCGACUCUCCAAAACCCUCGUCGACAU	chr20:43029878-43030133(+)$1	255	123	163	13.2342
gcggccgcaguggaggcuagagccggagcggcggcggcgg	chr5:95297256-95297525(-)$1	269	39	79	12.8172
GUUGAACCGGUUCUUGGGGGACUAUGUGGUGGACUUGGAC	chr9:79792464-79792729(+)$1	265	185	225	14.6602
CCAGCGGGCCCAGCACGGGGACGGGCUCGGGGCGGCGGGG	chr19:56599444-56599693(-)$1	249	46	86	15.2317
GAGGGGAUGAGGGGAGCAUGGGUGCCAAGGAGUCACGGAU	chr17:58469142-58469399(-)$1	257	82	122	14.9678
UUGGUGAGUGGGGAGCCUGGGGGCCCUGGCGAGCCUCCCG	chr6:32157484-32157764(-)$1	280	129	169	14.1333
CCCCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCG	chr11:2154646-2154848(-)$1	202	116	156	13.6570
AAGAGCGUGGAGAGCAGGCACCUGCUGACCAGCCCCUUCC	chr11:2154351-2154552(-)$1	201	51	91	13.8837
AGCUGGAUCUGGUGGAGGAUGCUGCGGCAGGUGCUUCGCA	chr6:48036283-48036526(-)$1	243	168	208	15.6006
GUCCGCGCGGCGGCGUCCCCAGAGGCGCGUGGGGCGGGCG	chr15:42867757-42868041(+)$1	284	26	66	16.8090
GGUGGCUGGGAGGUGUCUGGAGGGAUCUCUGGAGCCAUCG	chr1:155294924-155295226(+)$1	302	124	164	14.9746
cagggucgggugggagugggggcucugggggaggcccugg	chr17:7232365-7232629(-)$1	264	5	45	14.2649
AGCGCGAGCUGGAGGCGCUGGCGGCCCGGCUUGCGCGCCC	chr2:231902250-231902550(+)$1	300	34	74	17.5136
ccccggagccgggcgggcgucccgagccgggcccgcgggg	chr2:54197719-54197994(-)$1	275	107	147	13.5541
GAACUGCAGGCGUGAGCUACAGCAGAUGCAUGGGCAGCUG	chr8:145693805-145694065(+)$1	260	184	224	15.3605
CGCUCCAGCACCGACAGGAACUUGCGGAUGUCCUGGGCGA	chr1:226032899-226033164(-)$1	265	123	163	12.8196
GAGCGUCUGUggcgcgcgcgcgcgcgccgccAGCGGUAGC	chr11:58346514-58346902(+)$1	388	13	53	14.9091
AggggggccgcgcgagcgaggcgggggcggggccgggACA	chr19:39440213-39440592(-)$1	379	13	53	13.7217
UGGGACUAUAGGAAGGUGAGGACGUCUUCUGUUUCCCUGG	chr16:448088-448333(+)$1	245	76	116	14.3428
CGCUGAGGGGGAGGGAGGAGCUCGCUCGAGGCCUGAGGGA	chr5:138629666-138630028(+)$1	362	209	249	12.6876
CCCCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCG	chr11:2154667-2154872(-)$1	205	140	180	14.1094
ggcggcggagggagaggggagcggcgcccgggccggggcc	chr8:30669812-30670093(-)$1	281	45	85	15.1906
ggacuccgggccccggcggcggcccAUGGGGCGGGAGGCG	chr16:22019503-22019805(+)$1	302	27	67	13.5187
gcgggggcgccacgagccggggcuggggggcccggcggag	chr16:69419494-69419756(-)$1	262	88	128	13.2072
gcggggaggccggggccUGCAGGCCCCCGGUACGACAAGA	chr10:101379902-101380206(-)$1	304	241	281	16.1294
cgggcggagccgggccgggcgcggggcggcgaggccgggc	chr9:126692066-126692363(-)$1	297	212	252	14.4855
GCCGGGCCGCGCCGAGGACGGCCCCGGCGCGAGCCUGGCA	chr2:220435318-220435568(-)$1	250	153	193	15.0637
AAGGGGAUGGUGGUCAGGGAAGGGUUCAGGCCCCCAGUCU	chr1:36788407-36788686(+)$1	279	106	146	13.8559
CCGCGCCGCUGGCGCCAGCACUGGGAGGAGGCGGUGCGGC	chr14:103568751-103569030(+)$1	279	20	60	16.1419
GGUGUCAGGGGGCUGGGGUGGCCUAGUCGUCUUUAUCCUU	chr20:35177510-35177776(-)$1	266	102	142	14.7536
GCGGUGGGGGAGGCGGCUAGCGUGGUGGACCCGGGCCGCG	chr12:121416292-121416616(+)$1	324	218	258	17.6749
CAGUGCUCGCGGCGGCGGCGACGGCGGCGGGAGGUUCGGU	chr16:69166299-69166541(-)$1	242	67	107	13.6115
CGGGGAUAGCGGGACGCGAGGUGGCGACGGGAGCUGCGGU	chr1:55352297-55352525(-)$1	228	13	53	13.9589
GGAACUUUUUUCCCUUCUUCAGGUCAGGGGAAAGGGAAUG	chr17:37618164-37618425(+)$1	261	123	163	14.2910
GAGGGGAUGAGGGGAGCAUGGGUGCCAAGGAGUCACGGAU	chr17:58469199-58469450(-)$1	251	133	173	14.9678
CCCCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCG	chr11:2154648-2154854(-)$1	206	122	162	14.1094
CGGGGAGGGUGGGCACGGGGCUGCGGCCACCCGCUGUGUU	chr8:144672185-144672436(-)$1	251	102	142	13.0919
AAGAGCGUGGAGAGCAGGCACCUGCUGACCAGCCCCUUCC	chr11:2154331-2154540(-)$1	209	39	79	13.8837
ACGGCGGUGGGGGAGGGGGCGGCUCGGGGCCCAGCGCGGG	chr17:30264226-30264479(+)$1	253	55	95	13.4821
GACGGGCGGGCGCCGGUGGGAGCUCGGGCCGUGCCCGCUG	chr19:46367578-46367860(+)$1	282	30	70	14.0539
ggggcggcgggggcggcggcggcggcggcgCGCGCCAUCC	chr2:231902452-231902690(+)$1	238	95	135	16.1485
gccgccgccgccgccgccgcugccgUGGGGCUCgggcggc	chrX:20284609-20284890(-)$1	281	29	69	15.9979
UGGCGGAGACCCCGGUGGGGGUAGCGGGGGGGUCCCGGGA	chr6:32157427-32157684(-)$1	257	90	130	15.6289
UUCGAGGCAGGCCUUACCGGGGUGGGAGUCGCUGGAGUCG	chr12:72056740-72057016(-)$1	276	62	102	14.2688
GGAUAUGGUACUCCUGAUGGUUUGGGUGGUUAUGGUAAGU	chr10:70101448-70101711(+)$1	263	126	166	13.1799
CCCCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCG	chr11:2154655-2154858(-)$1	203	126	166	14.1094
GUCCCUGUAGGGGGACCAAAGAGGGGCUUGGGGACGGGGA	chr22:24224479-24224750(+)$1	271	100	140	13.2855
cgguggcggaggaggcggGUACGAAUCAGCUGCGGGCGGA	chr4:39699790-39700053(+)$1	263	114	154	13.6149
AAGAGCGUGGAGAGCAGGCACCUGCUGACCAGCCCCUUCC	chr11:2154311-2154523(-)$1	212	22	62	13.8837
GGGUGUGGGCGGUGGGACGGAGGAUCUGAGGGUGACCCCC	chr22:20862357-20862671(+)$1	314	136	176	14.5691
UAGUGCGGGUUGGGGCGGGGGCUGCGGAGAGGGUGCUUAA	chr19:47987247-47987562(-)$1	315	96	136	15.3002
GUCUGUAAUGUGGGGCGGAAAUGGCUGGGAGGGGGAUGGG	chr19:36504885-36505229(-)$1	344	74	114	16.2812
GCGCCCCGCUUCUCGCUGCUGAGGGGAAGGGAGGGGGCGG	chr22:31741469-31741715(-)$1	246	47	87	14.7165

#DB
(..(((((.(.(((.((....))))).)))))).)))..)	chr3:51422719-51422965(+)$1	1	166	206	15.0700
(((((...((((..(((....)))...))))...))))))	chr1:38273923-38274203(+)$1	1	162	202	13.7306
((.(.(((....((.((....)).))....))).).))).	chr3:185542646-185542941(-)$1	1	19	59	18.0995
...(((..(..(((.((....)))))..)..)))..))))	chr17:2203226-2203509(-)$1	1	127	167	15.9079
((((((((.((((..((....))..))))...)))).)))	chr17:47841223-47841539(-)$1	1	233	273	14.2976
.(.(((...(((((.(......).)))))..)))))))))	chr3:50374570-50374902(-)$1	1	64	104	13.5540
.(((((((....((.((...))))...)))).)))..)))	chr20:43029878-43030133(+)$1	1	123	163	13.2342
((.(((((.((...(((....)))...)).))))).))))	chr5:95297256-95297525(-)$1	1	39	79	12.8172
(((.(((((.(.(.(((....))).).).)))..)).)))	chr9:79792464-79792729(+)$1	1	185	225	14.6602
((.((.(.((((((.((....)).))).))).).)).)))	chr19:56599444-56599693(-)$1	1	46	86	15.2317
((..((((....((.((....)).)).....))).)...)	chr17:58469142-58469399(-)$1	1	82	122	14.9678
..(((..((.(((.(((....)))))).))..))))))))	chr6:32157484-32157764(-)$1	1	129	169	14.1333
(((....(((..(((((......)))))....)))....)	chr11:2154646-2154848(-)$1	1	116	156	13.6570
(((.(..(((..(((((....)))))..)))..).)))))	chr11:2154351-2154552(-)$1	1	51	91	13.8837
((..(.(((((.((.((....)).)).))))).)))))))	chr6:48036283-48036526(-)$1	1	168	208	15.6006
((((((.(.(((((.((....)).)).))).).)))))))	chr15:42867757-42868041(+)$1	1	26	66	16.8090
(((((((.((((((.((....)).))))))..))))))).	chr1:155294924-155295226(+)$1	1	124	164	14.9746
(((((((...(.(((((....))))).)....))))))).	chr17:7232365-7232629(-)$1	1	5	45	14.2649
.(((((((((((.(.((....)).)))))))))))).)).	chr2:231902250-231902550(+)$1	1	34	74	17.5136
((((((.(((.((((((...)))..))).)))))).))))	chr2:54197719-54197994(-)$1	1	107	147	13.5541
(..((((..((((..((....))..))))....)))))))	chr8:145693805-145694065(+)$1	1	184	224	15.3605
(((.(((((((((.(((....)))))).))..))))))).	chr1:226032899-226033164(-)$1	1	123	163	12.8196
(..(((..(((((((((....)))))))))..))).))))	chr11:58346514-58346902(+)$1	1	13	53	14.9091
.(...((((.(((...((...))...))).))))....).	chr19:39440213-39440592(-)$1	1	13	53	13.7217
.((((..(((((((.((....)).).)))))).)))).))	chr16:448088-448333(+)$1	1	76	116	14.3428
(.((.(((..(((.(((...))).)))....))).)).).	chr5:138629666-138630028(+)$1	1	209	249	12.6876
((((...(((..(((((......)))))....)))....)	chr11:2154667-2154872(-)$1	1	140	180	14.1094
((((((...(((.(..(....)..).)))..)))...)))	chr8:30669812-30670093(-)$1	1	45	85	15.1906
(..((((..((((((((....)))...))))).)))).).	chr16:22019503-22019805(+)$1	1	27	67	13.5187
.(..((((.((.(.(((....))).))).))))).))).)	chr16:69419494-69419756(-)$1	1	88	128	13.2072
.(..(..((((((((((....)).))))))).)..)..).	chr10:101379902-101380206(-)$1	1	241	281	16.1294
(.(((...((((..(((....)))..))))...))).)))	chr9:126692066-126692363(-)$1	1	212	252	14.4855
((((((((((((((.((....)).))))))).))))))).	chr2:220435318-220435568(-)$1	1	153	193	15.0637
..((((...(.(.((......)).).)...))))...)))	chr1:36788407-36788686(+)$1	1	106	146	13.8559
((((((((((..(.(((....)))..)..)))))))))))	chr14:103568751-103569030(+)$1	1	20	60	16.1419
((....(((.(((((((....))))))).)))....))))	chr20:35177510-35177776(-)$1	1	102	142	14.7536
(((((.(((...((.((....)).))...)))..))))))	chr12:121416292-121416616(+)$1	1	218	258	17.6749
.)))))((.((.((.((....)).)).)).))((((((((	chr16:69166299-69166541(-)$1	1	67	107	13.6115
((....((((..(.(((......))).)....))))...)	chr1:55352297-55352525(-)$1	1	13	53	13.9589
(.(.(((((((((((.((...))..)))))))))))..).	chr17:37618164-37618425(+)$1	1	123	163	14.2910
((..((((....((.((....)).)).....))).)...)	chr17:58469199-58469450(-)$1	1	133	173	14.9678
((((...(((..(((((......)))))....)))....)	chr11:2154648-2154854(-)$1	1	122	162	14.1094
((.((.((((((.(.((....)).).)))))).)).)).)	chr8:144672185-144672436(-)$1	1	102	142	13.0919
(((.(..(((..(((((....)))))..)))..).)))))	chr11:2154331-2154540(-)$1	1	39	79	13.8837
.(.(((.((((....(((....)))....)))).))).).	chr17:30264226-30264479(+)$1	1	55	95	13.4821
(.(((((((((.(((((....)).)))))).)))))))))	chr19:46367578-46367860(+)$1	1	30	70	14.0539
((.(((.((...((.((....)).))..))))).))).))	chr2:231902452-231902690(+)$1	1	95	135	16.1485
(((((((((.((((.((....)).)))))))...))))))	chrX:20284609-20284890(-)$1	1	29	69	15.9979
.(((.....(((((.((....)).)))))..)))))))))	chr6:32157427-32157684(-)$1	1	90	130	15.6289
((((((((.((((((((....))))).))))))....)))	chr12:72056740-72057016(-)$1	1	62	102	14.2688
((.(((.((((((((((....))))).)).))).)))...	chr10:70101448-70101711(+)$1	1	126	166	13.1799
((((...(((..(((((......)))))....)))....)	chr11:2154655-2154858(-)$1	1	126	166	14.1094
.(((((((..(((..((.....))..)))....)))))))	chr22:24224479-24224750(+)$1	1	100	140	13.2855
((.(.((((..((..((....))..))..)))).).))..	chr4:39699790-39700053(+)$1	1	114	154	13.6149
(((.(..(((..(((((....)))))..)))..).)))))	chr11:2154311-2154523(-)$1	1	22	62	13.8837
(((.((.(.(..(.((((....).))).).).).)).)))	chr22:20862357-20862671(+)$1	1	136	176	14.5691
((.(.(...(((.(((....))).)))...).))))))))	chr19:47987247-47987562(-)$1	1	96	136	15.3002
((((.(..(.(.((.((....)).)).).).).))))).)	chr19:36504885-36505229(-)$1	1	74	114	16.2812
((.((((.((((((.((....)))))))).).))).))))	chr22:31741469-31741715(-)$1	1	47	87	14.7165

#PSSM
d : 0.16	g : 0.15	[ : 0.11	f : 0.10	c : 0.08	e : 0.08	i : 0.06	! : 0.05	b : 0.05	a : 0.03	" : 0.03	$ : 0.01	= : 0.01	] : 0.01	
g : 0.16	c : 0.13	d : 0.13	e : 0.10	! : 0.08	a : 0.08	i : 0.06	[ : 0.06	b : 0.05	f : 0.03	= : 0.03	$ : 0.01	" : 0.01	
[ : 0.18	! : 0.15	c : 0.13	g : 0.13	d : 0.08	e : 0.08	i : 0.05	f : 0.03	= : 0.03	# : 0.03	$ : 0.01	" : 0.01	b : 0.01	a : 0.01	
c : 0.27	[ : 0.11	g : 0.10	d : 0.08	! : 0.08	e : 0.06	a : 0.05	b : 0.05	# : 0.05	f : 0.03	= : 0.03	i : 0.03	" : 0.01	
c : 0.18	d : 0.13	a : 0.11	g : 0.10	[ : 0.08	b : 0.06	" : 0.06	e : 0.05	# : 0.05	= : 0.05	f : 0.03	i : 0.03	$ : 0.01	
c : 0.23	d : 0.15	! : 0.10	g : 0.10	" : 0.08	[ : 0.06	e : 0.05	# : 0.05	= : 0.05	b : 0.03	a : 0.03	f : 0.01	$ : 0.01	
" : 0.15	c : 0.15	! : 0.15	d : 0.15	[ : 0.10	g : 0.06	e : 0.05	= : 0.05	a : 0.03	f : 0.03	# : 0.01	b : 0.01	$ : 0.01	
c : 0.30	d : 0.13	" : 0.11	! : 0.08	e : 0.05	[ : 0.05	b : 0.05	a : 0.05	= : 0.05	f : 0.05	g : 0.03	$ : 0.01	
c : 0.25	[ : 0.13	d : 0.10	" : 0.08	# : 0.06	f : 0.06	! : 0.06	b : 0.05	= : 0.05	a : 0.03	g : 0.03	e : 0.01	i : 0.01	$ : 0.01	
c : 0.25	d : 0.10	[ : 0.10	# : 0.06	! : 0.06	e : 0.06	b : 0.06	f : 0.06	a : 0.05	" : 0.05	= : 0.05	g : 0.03	i : 0.01	
! : 0.20	c : 0.18	d : 0.10	# : 0.06	e : 0.06	b : 0.06	f : 0.06	[ : 0.05	a : 0.05	g : 0.05	= : 0.03	" : 0.03	i : 0.01	
c : 0.22	! : 0.16	[ : 0.11	d : 0.08	# : 0.08	f : 0.06	e : 0.05	" : 0.05	g : 0.05	= : 0.03	b : 0.03	i : 0.01	a : 0.01	
e : 0.22	b : 0.18	c : 0.16	a : 0.08	[ : 0.08	d : 0.05	f : 0.05	g : 0.05	! : 0.03	" : 0.01	i : 0.01	= : 0.01	# : 0.01	
e : 0.22	b : 0.18	[ : 0.13	c : 0.10	! : 0.10	a : 0.06	g : 0.05	" : 0.03	f : 0.03	i : 0.01	= : 0.01	# : 0.01	d : 0.01	
[ : 0.37	c : 0.25	e : 0.16	! : 0.08	g : 0.03	i : 0.01	" : 0.01	b : 0.01	= : 0.01	# : 0.01	
b : 0.45	c : 0.25	e : 0.16	a : 0.01	i : 0.01	" : 0.01	! : 0.01	o : 0.01	g : 0.01	[ : 0.01	
b : 0.49	c : 0.23	e : 0.16	o : 0.03	i : 0.01	a : 0.01	g : 0.01	m : 0.01	
m : 0.74	o : 0.11	l : 0.05	b : 0.03	c : 0.01	n : 0.01	a : 0.01	
m : 0.77	o : 0.11	l : 0.08	n : 0.01	
m : 0.77	o : 0.11	l : 0.08	n : 0.01	
m : 0.76	o : 0.11	c : 0.05	l : 0.03	b : 0.01	n : 0.01	
b : 0.49	c : 0.20	o : 0.10	e : 0.10	m : 0.03	i : 0.01	a : 0.01	g : 0.01	n : 0.01	
b : 0.50	c : 0.22	e : 0.10	o : 0.08	a : 0.03	i : 0.01	2 : 0.01	g : 0.01	
] : 0.40	c : 0.22	e : 0.16	2 : 0.10	b : 0.03	i : 0.01	3 : 0.01	g : 0.01	f : 0.01	
e : 0.20	c : 0.18	b : 0.15	2 : 0.13	3 : 0.08	a : 0.08	g : 0.05	] : 0.03	f : 0.03	i : 0.01	d : 0.01	
e : 0.20	c : 0.18	b : 0.16	3 : 0.08	] : 0.06	d : 0.05	g : 0.05	2 : 0.05	a : 0.03	f : 0.03	= : 0.03	i : 0.01	4 : 0.01	
c : 0.18	] : 0.16	e : 0.10	3 : 0.08	2 : 0.08	d : 0.06	f : 0.06	g : 0.05	4 : 0.03	5 : 0.03	= : 0.03	b : 0.03	a : 0.03	i : 0.01	
e : 0.13	2 : 0.11	c : 0.11	d : 0.10	a : 0.08	b : 0.06	] : 0.06	f : 0.06	4 : 0.05	g : 0.05	3 : 0.05	5 : 0.03	= : 0.03	i : 0.01	
c : 0.18	4 : 0.15	b : 0.10	e : 0.08	d : 0.08	] : 0.08	f : 0.06	3 : 0.05	a : 0.03	5 : 0.03	= : 0.03	g : 0.03	2 : 0.03	i : 0.01	
c : 0.20	4 : 0.16	d : 0.10	] : 0.10	2 : 0.06	e : 0.05	3 : 0.05	b : 0.05	f : 0.05	= : 0.05	5 : 0.03	g : 0.03	i : 0.01	a : 0.01	
c : 0.22	4 : 0.15	2 : 0.13	d : 0.11	e : 0.06	] : 0.05	= : 0.05	a : 0.05	3 : 0.03	5 : 0.03	f : 0.03	g : 0.03	b : 0.01	
c : 0.25	4 : 0.13	] : 0.11	2 : 0.11	d : 0.08	e : 0.06	3 : 0.06	= : 0.05	f : 0.05	a : 0.03	b : 0.01	
c : 0.33	d : 0.13	] : 0.10	2 : 0.08	a : 0.06	3 : 0.05	g : 0.05	= : 0.05	4 : 0.05	e : 0.03	i : 0.01	f : 0.01	
c : 0.28	] : 0.13	d : 0.13	a : 0.08	g : 0.08	2 : 0.05	= : 0.05	3 : 0.03	e : 0.03	4 : 0.03	i : 0.03	b : 0.01	f : 0.01	
c : 0.23	] : 0.11	g : 0.11	d : 0.10	b : 0.06	i : 0.06	a : 0.05	= : 0.05	4 : 0.05	f : 0.03	2 : 0.03	e : 0.03	3 : 0.03	
c : 0.11	] : 0.11	4 : 0.11	g : 0.11	d : 0.10	b : 0.06	e : 0.06	i : 0.06	f : 0.05	a : 0.05	= : 0.05	2 : 0.03	3 : 0.03	
g : 0.15	c : 0.13	] : 0.10	4 : 0.10	d : 0.08	e : 0.08	3 : 0.08	f : 0.06	i : 0.06	2 : 0.05	b : 0.05	= : 0.01	
g : 0.16	d : 0.11	c : 0.10	i : 0.10	4 : 0.10	e : 0.08	] : 0.08	b : 0.06	2 : 0.05	f : 0.05	3 : 0.05	= : 0.01	
g : 0.16	d : 0.11	c : 0.10	i : 0.10	a : 0.10	4 : 0.08	f : 0.06	e : 0.06	3 : 0.05	] : 0.05	2 : 0.03	b : 0.03	= : 0.01	
d : 0.20	c : 0.15	g : 0.11	] : 0.10	i : 0.10	f : 0.06	e : 0.06	: : 0.05	2 : 0.05	4 : 0.03	a : 0.01	b : 0.01	= : 0.01	

#score	860.3709799111911
#seq	59
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_CDS_m2_run2.txt

#BEAR
HHHHHHHH}CCCYYDDDD??	chr11:10828266-10828482(-)$1	216	147	167	11.1317
C}FFFFFFEEEEE}A}EEEE	chr11:68671113-68671390(-)$1	277	212	232	11.3248
HHHHHHHH}EEEEE}CCCZZ	chr3:31574338-31574625(+)$1	287	258	278	13.0026
:HHHHHHHH}EEEEE}DDDD	chr12:122516667-122516928(+)$1	261	234	254	11.3557
HHHHHHDDDDEEEEE}BB::	chr19:579399-579618(+)$1	219	195	215	9.8935
}GGGGGGGYYCCCHHHHHHH	chr5:149737164-149737441(+)$1	277	214	234	9.6895
ggFFFFFFYYBB}EEEEEZZ	chr21:18885347-18885591(+)$1	244	158	178	10.8155
:GGGGGGG~~~~BB}A}EEE	chr11:64879417-64879640(+)$1	223	193	213	13.0140
HHHHHHHH}FFFFFF}BB}B	chr4:37687719-37688007(-)$1	288	259	279	12.3801
JJJJJJJJ~~~~EEEEEYYF	chr20:2448217-2448467(-)$1	250	220	240	10.7883
HHHHHHHHEEEEECCC}A}D	chr12:118573932-118574184(+)$1	252	223	243	12.2274
YGGGGGGGZZZBB}DDDD@@	chr19:50270290-50270544(+)$1	254	196	216	11.4662
B}FFFFFF}DDDD}A}BB}E	chr6:3456684-3456984(-)$1	300	271	291	11.7594
::FFFFFFYYDDDDEEEEED	chr9:113018602-113018913(-)$1	311	273	293	11.0067
}GGGGGGGZZZDDDD}CCC}	chr3:9932212-9932551(+)$1	339	316	336	13.2705
eeFFFFFFYYA}EEEEEBBA	chr7:134001324-134001632(-)$1	308	280	300	10.5208
}GGGGGGG}DDDD~~~~DDD	chr5:176730180-176730498(-)$1	318	192	212	13.0578
IIIIIIII~~~~EEEEE:::	chr13:21750950-21751228(+)$1	278	218	238	10.8893
B}FFFFFF~~~~FFFFFFZZ	chr4:1795658-1795871(+)$1	213	86	106	11.2178
HHHHHHHH~~~~BB}JJJJJ	chr20:18118509-18118775(+)$1	266	239	259	10.8802
F}FFFFFFYYDDDDCCCCCC	chr6:167369520-167369781(-)$1	261	224	244	11.2681
CCFFFFFFFFFFFF}CCC}C	chr2:114647747-114647991(+)$1	244	202	222	9.2022
HHHHHHHA}DDDD}A}CCCZ	chr11:59577972-59578323(-)$1	351	290	310	11.7943
:GGGGGGGYYCCC}DDDDCC	chr17:79213266-79213482(+)$1	216	185	205	12.0695
DFFFFFFEEEEEEEEEEGGG	chr6:74363465-74363789(-)$1	324	102	122	9.1180
GGGGGGGBBEEEEE{EEEEE	chr2:74374845-74375069(-)$1	224	3	23	11.4432
DGGGGGGGYYBBDDDD{BB{	chr22:47133891-47134213(-)$1	322	181	201	11.3237
YGGGGGGGEEEEE{BB{CCC	chr16:89894817-89895143(+)$1	326	86	106	10.5408
YGGGGGGG}FFFFFF}BB::	chr7:23338925-23339186(+)$1	261	171	191	11.5197
GGGGGGG}DDDD}BB}BB}G	chr12:57532187-57532457(+)$1	270	115	135	11.1190
:GGGGGGGEEEEECCC}CCC	chr16:48643598-48643901(-)$1	303	248	268	11.9829
FFFFFF}CCCEEEEE}DDDD	chr15:73075829-73076106(-)$1	277	167	187	9.7806
A}FFFFFFYYCCC~~~~DDD	chr2:239148203-239148435(-)$1	232	140	160	11.2248
:GGGGGGG}EEEEEZZZBB}	chr19:8386736-8386950(+)$1	214	108	128	13.1937
}GGGGGGG}EEEEEFFFFFF	chr1:155231839-155232123(-)$1	284	144	164	12.8462
}GGGGGGG}DDDD______C	chr17:80477655-80477907(+)$1	252	219	239	11.7520
HHHHHHHH}EEEEE}CCC}B	chr12:12419513-12419801(-)$1	288	255	275	13.3392
}GGGGGGG}A}DDDD}BBZZ	chr2:96931904-96932198(+)$1	294	262	282	13.5662
YGGGGGGGZZZDDDDZZZBB	chr2:21266634-21266864(-)$1	230	200	220	12.5583
HHHHHHHHZZZDDDDCCC}D	chr11:46924240-46924581(-)$1	341	241	261	12.4102
dGGGGGGG~~~~A}DDDD}C	chr4:37687807-37688082(-)$1	275	253	273	12.6964
}GGGGGGG}FFFFFF~~~~D	chr6:28891164-28891416(-)$1	252	191	211	12.7817
FFFFFFFFZZZEEEEEFFFF	chr1:54665814-54666052(+)$1	238	149	169	11.3204
HHHHHHHH______EEEEEc	chr7:5433975-5434250(-)$1	275	236	256	10.6325
YGGGGGGG}DDDD~~~~EEE	chr20:23618299-23618557(-)$1	258	197	217	13.1643
CCFFFFFFYYFFFFFF}CCC	chr20:5093545-5093825(-)$1	280	212	232	10.1430
ddGGGGGGG~~~~EEEEE}B	chr2:70528976-70529292(-)$1	316	295	315	10.9273
HHHHHHHH?????EEEEEFF	chr19:10946724-10946977(-)$1	253	225	245	10.6318
HHHHHHHHCCC:DDDD{BBD	chr17:16256409-16256653(-)$1	244	155	175	9.7202
DGGGGGGG~~~~EEEEEZZZ	chr17:48624458-48624748(+)$1	290	201	221	13.9831
DGGGGGGGYYBB}EEEEE}B	chr16:29827723-29827980(+)$1	257	197	217	13.8352
dGGGGGGGYYDDDDEEEEE}	chr7:37960376-37960643(+)$1	267	235	255	12.8720
CFFFFFFZZZDDDD~~~~EE	chr2:21266287-21266510(-)$1	223	185	205	10.5224
EGGGGGGGYYEEEEE}BB}D	chr17:80196522-80196750(+)$1	228	205	225	14.6249
HHHHHHHH}DDDDYYEEEEE	chr4:166300227-166300553(+)$1	326	170	190	12.6697
C}FFFFFFEEEEEDDDDYYE	chr17:42426425-42426702(+)$1	277	253	273	11.0800
}GGGGGGG}EEEEEYYBB}B	chr19:18391872-18392113(-)$1	241	204	224	14.7430
HHHHHHHH}BBZZZAZZZCC	chr16:21611001-21611250(+)$1	249	187	207	11.1348
HHHHHHHHCCC~~~~CCCZZ	chr6:143832569-143832828(-)$1	259	197	217	11.8175
f:FFFFFFYYEEEEE~~~~F	chr12:133338105-133338349(-)$1	244	161	181	11.4608

#otherMatches

#Seq PSSM
UUAUUUAACAGAUUAAAAGU	chr11:10828266-10828482(-)$1	216	147	167	11.1317
AUAUGGGAGGAAGGGAGGAC	chr11:68671113-68671390(-)$1	277	212	232	11.3248
CCGGGGCCCAGUGCGCGCAC	chr3:31574338-31574625(+)$1	287	258	278	13.0026
ccccggcccgggcccacgcg	chr12:122516667-122516928(+)$1	261	234	254	11.3557
UGGCUGAAGGGGGGCGUGGU	chr19:579399-579618(+)$1	219	195	215	9.8935
GUGCGUGCGGCGCGGGAAGU	chr5:149737164-149737441(+)$1	277	214	234	9.6895
GGGGUCCUCAGCACCCGCCC	chr21:18885347-18885591(+)$1	244	158	178	10.8155
CGGGGGCGAGAUCUGAGGAU	chr11:64879417-64879640(+)$1	223	193	213	13.0140
GGGACGGCAGCCCCGCGGCG	chr4:37687719-37688007(-)$1	288	259	279	12.3801
GAGUGGACUGUGGGGGGCGG	chr20:2448217-2448467(-)$1	250	220	240	10.7883
CGGGCGGCGGGCGUGCAGCG	chr12:118573932-118574184(+)$1	252	223	243	12.2274
CGCGGGGGAGGGGGGAGCGU	chr19:50270290-50270544(+)$1	254	196	216	11.4662
gccgcccggggacgcggcgg	chr6:3456684-3456984(-)$1	300	271	291	11.7594
AACUGGGGAAGGCGGUGGCG	chr9:113018602-113018913(-)$1	311	273	293	11.0067
UCCCCCGCUGGAGCCUGCGG	chr3:9932212-9932551(+)$1	339	316	336	13.2705
ACGCGCCCACGCCCUGUCCC	chr7:134001324-134001632(-)$1	308	280	300	10.5208
GAAGCGGCCCCGGGAGCAUG	chr5:176730180-176730498(-)$1	318	192	212	13.0578
CCUGGAGAUCGAGGCGGAGA	chr13:21750950-21751228(+)$1	278	218	238	10.8893
GCAGCGCGUCGUGGGGCGAG	chr4:1795658-1795871(+)$1	213	86	106	11.2178
GGCCUCUCGUGGUCUCUGCC	chr20:18118509-18118775(+)$1	266	239	259	10.8802
GAGCGUGGGAGCCGGGCCCU	chr6:167369520-167369781(-)$1	261	224	244	11.2681
GAUGGCGGGGGAGGGAGGAG	chr2:114647747-114647991(+)$1	244	202	222	9.2022
UCCCCCACCCUCCAGUGCUU	chr11:59577972-59578323(-)$1	351	290	310	11.7943
GCCCUGCGGAGCUGCUUCGC	chr17:79213266-79213482(+)$1	216	185	205	12.0695
CGGCCCGGGGGCUUCGGGCU	chr6:74363465-74363789(-)$1	324	102	122	9.1180
CGGUCCCCCGCUCCGCGUCU	chr2:74374845-74375069(-)$1	224	3	23	11.4432
GGGCGGCGGAGCCGCUGCAA	chr22:47133891-47134213(-)$1	322	181	201	11.3237
AGGCGCGGCUGCAUGGACGC	chr16:89894817-89895143(+)$1	326	86	106	10.5408
UCCCGUAGGAGCAGCGUUCU	chr7:23338925-23339186(+)$1	261	171	191	11.5197
GGGCUGGCGGUGCGACGGUG	chr12:57532187-57532457(+)$1	270	115	135	11.1190
gccUCGAUCGGUCCGGGUCU	chr16:48643598-48643901(-)$1	303	248	268	11.9829
CUGCGCUCUCUCUGGAGCUC	chr15:73075829-73076106(-)$1	277	167	187	9.7806
cggccgggcaggcgccgugg	chr2:239148203-239148435(-)$1	232	140	160	11.2248
GGAAUUCAUGGACGACACGA	chr19:8386736-8386950(+)$1	214	108	128	13.1937
UGGAGGGCAGAGGGCCGCGG	chr1:155231839-155232123(-)$1	284	144	164	12.8462
GGCGCGCCUGGAGGGCCGCG	chr17:80477655-80477907(+)$1	252	219	239	11.7520
gggggaggggagggacggag	chr12:12419513-12419801(-)$1	288	255	275	13.3392
GCGGGGACCCUGCUGGCCUC	chr2:96931904-96932198(+)$1	294	262	282	13.5662
GCCUGGGCCUAGGCCAGAGG	chr2:21266634-21266864(-)$1	230	200	220	12.5583
GGAUGUAGUAAGUACCUCCC	chr11:46924240-46924581(-)$1	341	241	261	12.4102
GGCUCCGGGUGAGUGUCCGG	chr4:37687807-37688082(-)$1	275	253	273	12.6964
AGAGGCACAUGCGGCCCAAC	chr6:28891164-28891416(-)$1	252	191	211	12.7817
GCAGCUCGGCCUUGGGGGCU	chr1:54665814-54666052(+)$1	238	149	169	11.3204
CUGGCCACUUCAUGUGCCCC	chr7:5433975-5434250(-)$1	275	236	256	10.6325
AGGGUGUGCGGCGUGCACUG	chr20:23618299-23618557(-)$1	258	197	217	13.1643
CGCUCCGGUAAGGCGUGUGU	chr20:5093545-5093825(-)$1	280	212	232	10.1430
CCUCAGCCACCACGCGACGC	chr2:70528976-70529292(-)$1	316	295	315	10.9273
CGGCGGGGAGGAAGCAGUGU	chr19:10946724-10946977(-)$1	253	225	245	10.6318
uugcucccgccaccgccgcc	chr17:16256409-16256653(-)$1	244	155	175	9.7202
AGCGGGCCCCUAGGGCACUC	chr17:48624458-48624748(+)$1	290	201	221	13.9831
CUCCGGCCUCCAGGCUCUGG	chr16:29827723-29827980(+)$1	257	197	217	13.8352
CCUGGACCCUGUGCGGCCUG	chr7:37960376-37960643(+)$1	267	235	255	12.8720
CGGGUCCCUGAGGGCCUCCC	chr2:21266287-21266510(-)$1	223	185	205	10.5224
AGGAGGAGAAGCUCCACAAG	chr17:80196522-80196750(+)$1	228	205	225	14.6249
CUGCUGGCUCUGUGCGGGGC	chr4:166300227-166300553(+)$1	326	170	190	12.6697
CCCUCAGCCUAGGCAAGAGC	chr17:42426425-42426702(+)$1	277	253	273	11.0800
CGGCCAGCGAGGAGCAGGAG	chr19:18391872-18392113(-)$1	241	204	224	14.7430
ggccgcgggcggcAGGAAGG	chr16:21611001-21611250(+)$1	249	187	207	11.1348
CGCGUGGUUUGACCAGGCCA	chr6:143832569-143832828(-)$1	259	197	217	11.8175
UCGCUGGGUCCCCGCACCCU	chr12:133338105-133338349(-)$1	244	161	181	11.4608

#DB
)))))))).)))..))))..	chr11:10828266-10828482(-)$1	1	147	167	11.1317
).))))))))))).).))))	chr11:68671113-68671390(-)$1	1	212	232	11.3248
)))))))).))))).)))..	chr3:31574338-31574625(+)$1	1	258	278	13.0026
.)))))))).))))).))))	chr12:122516667-122516928(+)$1	1	234	254	11.3557
))))))))))))))).))..	chr19:579399-579618(+)$1	1	195	215	9.8935
.)))))))..))))))))))	chr5:149737164-149737441(+)$1	1	214	234	9.6895
))))))))..)).)))))..	chr21:18885347-18885591(+)$1	1	158	178	10.8155
.)))))))....)).).)))	chr11:64879417-64879640(+)$1	1	193	213	13.0140
)))))))).)))))).)).)	chr4:37687719-37688007(-)$1	1	259	279	12.3801
))))))))....)))))..)	chr20:2448217-2448467(-)$1	1	220	240	10.7883
)))))))))))))))).).)	chr12:118573932-118574184(+)$1	1	223	243	12.2274
.)))))))...)).))))..	chr19:50270290-50270544(+)$1	1	196	216	11.4662
).)))))).)))).).)).)	chr6:3456684-3456984(-)$1	1	271	291	11.7594
..))))))..))))))))))	chr9:113018602-113018913(-)$1	1	273	293	11.0067
.)))))))...)))).))).	chr3:9932212-9932551(+)$1	1	316	336	13.2705
))))))))..).))))))))	chr7:134001324-134001632(-)$1	1	280	300	10.5208
.))))))).))))....)))	chr5:176730180-176730498(-)$1	1	192	212	13.0578
))))))))....)))))...	chr13:21750950-21751228(+)$1	1	218	238	10.8893
).))))))....))))))..	chr4:1795658-1795871(+)$1	1	86	106	11.2178
))))))))....)).)))))	chr20:18118509-18118775(+)$1	1	239	259	10.8802
).))))))..))))))))))	chr6:167369520-167369781(-)$1	1	224	244	11.2681
)))))))))))))).))).)	chr2:114647747-114647991(+)$1	1	202	222	9.2022
)))))))).)))).).))).	chr11:59577972-59578323(-)$1	1	290	310	11.7943
.)))))))..))).))))))	chr17:79213266-79213482(+)$1	1	185	205	12.0695
((((((((((((((((((((	chr6:74363465-74363789(-)$1	1	102	122	9.1180
((((((((((((((.(((((	chr2:74374845-74375069(-)$1	1	3	23	11.4432
))))))))..))((((.((.	chr22:47133891-47134213(-)$1	1	181	201	11.3237
.)))))))(((((.((.(((	chr16:89894817-89895143(+)$1	1	86	106	10.5408
.))))))).)))))).))..	chr7:23338925-23339186(+)$1	1	171	191	11.5197
))))))).)))).)).)).)	chr12:57532187-57532457(+)$1	1	115	135	11.1190
.))))))))))))))).)))	chr16:48643598-48643901(-)$1	1	248	268	11.9829
)))))).)))))))).))))	chr15:73075829-73076106(-)$1	1	167	187	9.7806
).))))))..)))....)))	chr2:239148203-239148435(-)$1	1	140	160	11.2248
.))))))).)))))...)).	chr19:8386736-8386950(+)$1	1	108	128	13.1937
.))))))).)))))))))))	chr1:155231839-155232123(-)$1	1	144	164	12.8462
.))))))).))))......)	chr17:80477655-80477907(+)$1	1	219	239	11.7520
)))))))).))))).))).)	chr12:12419513-12419801(-)$1	1	255	275	13.3392
.))))))).).)))).))..	chr2:96931904-96932198(+)$1	1	262	282	13.5662
.)))))))...))))...))	chr2:21266634-21266864(-)$1	1	200	220	12.5583
))))))))...))))))).)	chr11:46924240-46924581(-)$1	1	241	261	12.4102
))))))))....).)))).)	chr4:37687807-37688082(-)$1	1	253	273	12.6964
.))))))).))))))....)	chr6:28891164-28891416(-)$1	1	191	211	12.7817
))))))))...)))))((((	chr1:54665814-54666052(+)$1	1	149	169	11.3204
))))))))......)))))(	chr7:5433975-5434250(-)$1	1	236	256	10.6325
.))))))).))))....)))	chr20:23618299-23618557(-)$1	1	197	217	13.1643
))))))))..)))))).)))	chr20:5093545-5093825(-)$1	1	212	232	10.1430
)))))))))....))))).)	chr2:70528976-70529292(-)$1	1	295	315	10.9273
)))))))).....)))))))	chr19:10946724-10946977(-)$1	1	225	245	10.6318
))))))))))).((((.(((	chr17:16256409-16256653(-)$1	1	155	175	9.7202
))))))))....)))))...	chr17:48624458-48624748(+)$1	1	201	221	13.9831
))))))))..)).))))).)	chr16:29827723-29827980(+)$1	1	197	217	13.8352
))))))))..))))))))).	chr7:37960376-37960643(+)$1	1	235	255	12.8720
)))))))...))))....))	chr2:21266287-21266510(-)$1	1	185	205	10.5224
))))))))..))))).)).)	chr17:80196522-80196750(+)$1	1	205	225	14.6249
)))))))).))))..)))))	chr4:166300227-166300553(+)$1	1	170	190	12.6697
).)))))))))))))))..)	chr17:42426425-42426702(+)$1	1	253	273	11.0800
.))))))).)))))..)).)	chr19:18391872-18392113(-)$1	1	204	224	14.7430
)))))))).))...)...))	chr16:21611001-21611250(+)$1	1	187	207	11.1348
)))))))))))....)))..	chr6:143832569-143832828(-)$1	1	197	217	11.8175
).))))))..)))))....)	chr12:133338105-133338349(-)$1	1	161	181	11.4608

#PSSM
H : 0.24	} : 0.13	: : 0.09	C : 0.08	Y : 0.08	D : 0.06	F : 0.05	d : 0.05	B : 0.03	G : 0.03	g : 0.01	J : 0.01	e : 0.01	I : 0.01	A : 0.01	E : 0.01	f : 0.01	
G : 0.41	H : 0.26	} : 0.09	F : 0.06	: : 0.03	C : 0.03	g : 0.01	J : 0.01	e : 0.01	I : 0.01	d : 0.01	
G : 0.43	H : 0.26	F : 0.26	J : 0.01	I : 0.01	
G : 0.43	H : 0.26	F : 0.26	J : 0.01	I : 0.01	
G : 0.43	H : 0.26	F : 0.26	J : 0.01	I : 0.01	
G : 0.43	H : 0.26	F : 0.26	J : 0.01	I : 0.01	
G : 0.43	H : 0.24	F : 0.24	D : 0.01	J : 0.01	I : 0.01	} : 0.01	
G : 0.39	H : 0.23	F : 0.21	D : 0.01	J : 0.01	I : 0.01	A : 0.01	E : 0.01	B : 0.01	} : 0.01	C : 0.01	Z : 0.01	
} : 0.28	Y : 0.21	~ : 0.11	E : 0.09	Z : 0.09	C : 0.05	D : 0.03	H : 0.01	F : 0.01	B : 0.01	_ : 0.01	G : 0.01	? : 0.01	
Y : 0.21	E : 0.19	D : 0.13	~ : 0.13	Z : 0.09	C : 0.06	F : 0.06	} : 0.01	A : 0.01	_ : 0.01	? : 0.01	B : 0.01	
E : 0.28	D : 0.18	~ : 0.13	C : 0.09	F : 0.08	Z : 0.08	B : 0.06	A : 0.01	} : 0.01	_ : 0.01	? : 0.01	
E : 0.30	D : 0.24	~ : 0.15	F : 0.08	C : 0.06	B : 0.06	} : 0.01	_ : 0.01	? : 0.01	: : 0.01	Z : 0.01	
E : 0.36	D : 0.26	F : 0.09	C : 0.05	} : 0.05	B : 0.05	~ : 0.03	Y : 0.01	A : 0.01	_ : 0.01	? : 0.01	Z : 0.01	
E : 0.35	D : 0.18	} : 0.09	F : 0.09	~ : 0.06	B : 0.05	Y : 0.03	C : 0.03	_ : 0.03	H : 0.01	{ : 0.01	Z : 0.01	
E : 0.30	D : 0.18	F : 0.09	} : 0.08	~ : 0.08	A : 0.06	C : 0.05	B : 0.03	Y : 0.03	H : 0.01	{ : 0.01	Z : 0.01	_ : 0.01	
E : 0.24	} : 0.19	C : 0.13	D : 0.11	~ : 0.09	F : 0.05	Z : 0.05	H : 0.01	A : 0.01	J : 0.01	B : 0.01	_ : 0.01	Y : 0.01	
E : 0.24	C : 0.13	B : 0.13	D : 0.11	~ : 0.09	} : 0.06	F : 0.05	{ : 0.05	Z : 0.05	H : 0.01	J : 0.01	_ : 0.01	
E : 0.19	B : 0.19	C : 0.18	D : 0.13	F : 0.05	Z : 0.05	~ : 0.05	Y : 0.03	H : 0.01	A : 0.01	: : 0.01	J : 0.01	G : 0.01	_ : 0.01	
} : 0.19	E : 0.15	C : 0.13	Z : 0.09	B : 0.08	D : 0.06	: : 0.05	F : 0.05	Y : 0.03	~ : 0.03	? : 0.01	H : 0.01	@ : 0.01	J : 0.01	G : 0.01	_ : 0.01	
D : 0.16	C : 0.15	E : 0.13	Z : 0.11	B : 0.09	F : 0.08	: : 0.05	} : 0.05	G : 0.03	? : 0.01	H : 0.01	@ : 0.01	A : 0.01	J : 0.01	{ : 0.01	c : 0.01	

#score	702.5086583463153
#seq	60
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_UTR_m1_run1.txt

#BEAR
::eeeeettttttttttteeeeebb[e	chr22:29696052-29696267(+)$1	215	18	45	19.7853
eeeeeyyyyyyyyyyyyyyyyeeeee:	chr11:767303-767632(-)$1	329	293	320	20.2168
ggggggwwwwwwwwwwwwwwggggggg	chr14:23528019-23528243(-)$1	224	93	120	24.2867
edddd[attttttttttta]dddd22e	chr12:112194488-112194787(+)$1	299	105	132	22.1815
fffffwwwwwwwwwwwwwwffffffcc	chr19:2754925-2755226(-)$1	301	11	38	22.1193
cc[dddduuuuuuuuuuuudddd]ccc	chr1:11721883-11722195(+)$1	312	92	119	23.2676
ggggggxxxxxxxxxxxxxxxgggggg	chr2:27422411-27422623(-)$1	212	117	144	19.3107
$$$$bbwwwwwwwwwwwwwwbb22ddd	chr16:31202221-31202496(+)$1	275	219	246	20.2094
ffffffvvvvvvvvvvvvvffffff]b	chr17:27069558-27069858(+)$1	300	81	108	23.1503
ffffffuuuuuuuuuuuuffffff::F	chr14:24105822-24106030(+)$1	208	40	67	20.6152
ccc[cccuuuuuuuuuuuuccccccff	chr17:79780235-79780512(-)$1	277	125	152	24.3258
cceeeeeuuuuuuuuuuuueeeee22c	chr20:39803899-39804117(+)$1	218	125	152	23.2150
:fffffftttttttttttffffff:ff	chr14:70238515-70238771(+)$1	256	49	76	20.0855
ccc[cccvvvvvvvvvvvvvcccccc:	chr19:55602293-55602591(-)$1	298	271	298	23.2526
eeee[bbtttttttttttbb]eeeee]	chr20:25655287-25655585(-)$1	298	159	186	21.9847
::eeeeettttttttttteeeee:ddd	chr2:98272478-98272728(-)$1	250	28	55	19.1673
$$eeeeettttttttttteeeee333d	chr3:49051487-49051745(+)$1	258	56	83	21.9761
ccc[ccctttttttttttccc]ccc44	chr17:73231095-73231398(+)$1	303	169	196	23.4085
ggggggwwwwwwwwwwwwwwggggggg	chr9:117069955-117070158(+)$1	203	131	158	24.2867
hccccccuuuuuuuuuuuuccc]ccc]	chr2:190339965-190340297(+)$1	332	256	283	24.4383
ggggggwwwwwwwwwwwwwwggggggg	chr9:117069902-117070130(+)$1	228	184	211	24.2867
hhhhhhattttttttttta]hhhhhhh	chr3:184101241-184101465(+)$1	224	57	84	22.4750
ggggggwwwwwwwwwwwwwwggggggg	chr12:48366827-48367073(-)$1	246	70	97	24.2867
ff[cccyyyyyyyyyyyyyyyyccc]f	chr20:34291866-34292123(-)$1	257	224	251	21.5629
ggggggguuuuuuuuuuuugggggggH	chr16:2581235-2581470(+)$1	235	24	51	24.0292
bb[cccuuuuuuuuuuuuccc]bbGGG	chr4:762034-762294(-)$1	260	37	64	21.5014
hhhhhhattttttttttta]hhhhhhh	chr3:184101265-184101488(+)$1	223	33	60	22.4750
ggggggxxxxxxxxxxxxxxxgggggg	chr1:1322387-1322631(-)$1	244	178	205	19.3107
eeeeevvvvvvvvvvvvveeeeecccf	chr5:6599459-6599732(-)$1	273	119	146	22.4459
hhhhhhvvvvvvvvvvvvvhhhhhhhh	chr11:831435-831761(+)$1	326	35	62	22.5907
eeecccwwwwwwwwwwwwwwccc6666	chr11:47738642-47738897(-)$1	255	138	165	21.6815
cccddddtttttttttttdddd333cc	chr5:179041582-179041808(-)$1	226	194	221	22.1440
dd[cccwwwwwwwwwwwwwwccc]ddd	chr6:99847864-99848085(-)$1	221	37	64	23.1466
ee[cccwwwwwwwwwwwwwwccc]eee	chr2:201775250-201775486(-)$1	236	71	98	23.5002
ggggggwwwwwwwwwwwwwwggggggg	chr12:51453435-51453699(+)$1	264	59	86	24.2867
bb!!ccctttttttttttccc22bb]f	chr5:73923266-73923571(-)$1	305	40	67	22.0280
gggggggtttttttttttgggggggDD	chr9:139757174-139757417(-)$1	243	139	166	21.2488
ggggggvvvvvvvvvvvvvggggggg]	chr2:85772126-85772334(+)$1	208	108	135	25.0047
!!ddddwwwwwwwwwwwwwwdddd]hh	chr8:21939475-21939697(+)$1	222	123	150	22.2284
hhhhhhhuuuuuuuuuuuuhhhhhhhh	chr1:40766483-40766806(-)$1	323	271	298	22.0379
ggggggvvvvvvvvvvvvvggggggg6	chr2:85772115-85772320(+)$1	205	11	38	24.5569
iiii[bbtttttttttttbbiiiiiii	chr20:43565190-43565466(+)$1	276	196	223	22.7725
!fffffftttttttttttffffff]hh	chr1:156219409-156219672(-)$1	263	42	69	22.0228
fff[cccuuuuuuuuuuuucccfffff	chr1:156354605-156354866(+)$1	261	110	137	23.9570
dd[cccyyyyyyyyyyyyyyyycccdd	chr15:65108111-65108421(-)$1	310	110	137	21.2098
g"""cccvvvvvvvvvvvvvccc4444	chr17:7128175-7128377(+)$1	202	167	194	23.4825
eeee!!attttttttttta22eeeee]	chr7:73007749-73007967(-)$1	218	92	119	23.0751
%eeeeevvvvvvvvvvvvveeeee666	chr3:184107172-184107440(+)$1	268	162	189	21.7612
[eeeeevvvvvvvvvvvvveeeeeeee	chr17:48631511-48631740(+)$1	229	135	162	23.6192
==[cccvvvvvvvvvvvvvccc]====	chr2:97525528-97525808(-)$1	280	189	216	24.9225
[fffffftttttttttttffffff]bb	chr16:8988306-8988581(-)$1	275	139	166	21.7562
ggggggvvvvvvvvvvvvvgggggggb	chr6:26285195-26285490(-)$1	295	151	178	24.7178
gggddddtttttttttttdddd]gggg	chr10:75002716-75003024(-)$1	308	115	142	22.6922
======xxxxxxxxxxxxxxx======	chr3:49052709-49052995(+)$1	286	57	84	18.8746
dddcccvvvvvvvvvvvvvccc]dddd	chr11:93463410-93463694(-)$1	284	188	215	23.5138
ggggggwwwwwwwwwwwwwwggggggg	chr6:32083307-32083600(-)$1	293	229	256	24.2867
eee[cccuuuuuuuuuuuuccceeeee	chr20:2815948-2816247(-)$1	299	245	272	24.0988
cc[ddddtttttttttttdddd]ccc4	chr3:9957729-9958013(+)$1	284	59	86	22.3432
eeee!!attttttttttta22eeeee]	chr7:73007711-73007949(-)$1	238	74	101	23.0751

#otherMatches

#Seq PSSM
CCCCUUCCCAUUCUAACCGAAGGGCCC	chr22:29696052-29696267(+)$1	215	18	45	19.7853
GGAGGAAAGCAAGAGGACAGACCUCCA	chr11:767303-767632(-)$1	329	293	320	20.2168
CUCUCAUUUCCCAUUAAGUCUGAGAGG	chr14:23528019-23528243(-)$1	224	93	120	24.2867
GUCCCUCUCUCUCUGCCUGUGGGAAUC	chr12:112194488-112194787(+)$1	299	105	132	22.1815
GGGCGACAUCAUGACCUUCUGUCCCGG	chr19:2754925-2755226(-)$1	301	11	38	22.1193
GGAGCCCCAGAAGCUAGAUGGGUACCA	chr1:11721883-11722195(+)$1	312	92	119	23.2676
UCUCCACAUUAUCUUUGUUCCUGGGGA	chr2:27422411-27422623(-)$1	212	117	144	19.3107
UAAAUCAGAAUAAAAAAGUAGAGCAGU	chr16:31202221-31202496(+)$1	275	219	246	20.2094
GCCCAGUUAGAAAAUAAGUCUGggccg	chr17:27069558-27069858(+)$1	300	81	108	23.1503
ggugacuuugaagagacugucaccuau	chr14:24105822-24106030(+)$1	208	40	67	20.6152
CACCAGGUCCCUUUUCCUUCCUGUGCC	chr17:79780235-79780512(-)$1	277	125	152	24.3258
UUUCCCUGAGGAAUGAAAAAGGGAUUG	chr20:39803899-39804117(+)$1	218	125	152	23.2150
UAGCUUUGGACACUUAAAAGAGCUCUA	chr14:70238515-70238771(+)$1	256	49	76	20.0855
CACAGGCACCACAAAUAAAAGUCGUGA	chr19:55602293-55602591(-)$1	298	271	298	23.2526
UGUGGUCUCUUUCCUACUGAGCACAUA	chr20:25655287-25655585(-)$1	298	159	186	21.9847
CAGAGCACUUCAUCCACUUGCUCCUCC	chr2:98272478-98272728(-)$1	250	28	55	19.1673
GACCAGGUAAUAUAUGCUCCUGGGCAG	chr3:49051487-49051745(+)$1	258	56	83	21.9761
UGCAUGGAGAAUCUGAUACCGAGCAGC	chr17:73231095-73231398(+)$1	303	169	196	23.4085
AGGCUGUCUGCCUCUAUCCCCAGCCUG	chr9:117069955-117070158(+)$1	203	131	158	24.2867
UAUUUCUGUUCUAAAAAUAAGAUAAUA	chr2:190339965-190340297(+)$1	332	256	283	24.4383
AGGCUGUCUGCCUCUAUCCCCAGCCUG	chr9:117069902-117070130(+)$1	228	184	211	24.2867
CCUGCCCAUCAGGUGCAAGUGGUAGGG	chr3:184101241-184101465(+)$1	224	57	84	22.4750
AAUAAAAUCUCGGUGUUCUAUUUAUUU	chr12:48366827-48367073(-)$1	246	70	97	24.2867
AUUUCAAAAUUAUAUUUCUUGAUGGUA	chr20:34291866-34292123(-)$1	257	224	251	21.5629
CCUGGGUGGUGGGAGAGGGGCCCAGGG	chr16:2581235-2581470(+)$1	235	24	51	24.0292
AGAAUCCAACCACUAACCGAUCCUGGC	chr4:762034-762294(-)$1	260	37	64	21.5014
CCUGCCCAUCAGGUGCAAGUGGUAGGG	chr3:184101265-184101488(+)$1	223	33	60	22.4750
CUUGGUGGAUUUGGAAAUGGAACUGAG	chr1:1322387-1322631(-)$1	244	178	205	19.3107
AGCUUUAAUAAUUACAUUGAGCUGCAC	chr5:6599459-6599732(-)$1	273	119	146	22.4459
agcucaccuCCCCCCACCUUGAGCUCC	chr11:831435-831761(+)$1	326	35	62	22.5907
GCUGCCUUUAUUCUCAAACUGGCAAAC	chr11:47738642-47738897(-)$1	255	138	165	21.6815
UCCAGCUUUUCUCAAGUUAGUUAUAGG	chr5:179041582-179041808(-)$1	226	194	221	22.1440
CUUUUUUUUUUUUAAUCUGUAAAUAGG	chr6:99847864-99848085(-)$1	221	37	64	23.1466
UCAGUUGGGAUAAUGGGAAAAACAGAG	chr2:201775250-201775486(-)$1	236	71	98	23.5002
CUGGGCUUUUACUGUGAUGUGUUCAGU	chr12:51453435-51453699(+)$1	264	59	86	24.2867
UUGCUGUAGAAACACAUAACAAAGGGC	chr5:73923266-73923571(-)$1	305	40	67	22.0280
CUCGGGGGAAGAAGAUGGCCCUGGGGG	chr9:139757174-139757417(-)$1	243	139	166	21.2488
GCUGGUGUGGUACAGAGAAGCCAGCUU	chr2:85772126-85772334(+)$1	208	108	135	25.0047
AUGCCGCCUACACACGAUCCUGGCCCU	chr8:21939475-21939697(+)$1	222	123	150	22.2284
ACUGGCCAUCUUGUCCUUGGGUCAGUG	chr1:40766483-40766806(-)$1	323	271	298	22.0379
CAAGGUGUCCUACAGAAAAACCUUGGG	chr2:85772115-85772320(+)$1	205	11	38	24.5569
UCCUACUGUGGAGCAAGAAGAGGAGGG	chr20:43565190-43565466(+)$1	276	196	223	22.7725
UCCUGUGCCCACCAGCCCCACAGGUGC	chr1:156219409-156219672(-)$1	263	42	69	22.0228
CCCAUUCCUCCAGCUGCAAGAAGGGAG	chr1:156354605-156354866(+)$1	261	110	137	23.9570
CUUCAGUUUCUCUCACUUUGCCCUGGG	chr15:65108111-65108421(-)$1	310	110	137	21.2098
GCAACUUCAAAAGCAUCUCCAAGGCCU	chr17:7128175-7128377(+)$1	202	167	194	23.4825
agcugugacauuGGGGGCCUAGGCUGG	chr7:73007749-73007967(-)$1	218	92	119	23.0751
CUCCCACCCCCACUACCUCUGGGAACC	chr3:184107172-184107440(+)$1	268	162	189	21.7612
UCAGCCCACAACCUGCUCCGGCUGCAU	chr17:48631511-48631740(+)$1	229	135	162	23.6192
UGGGCCUGCUGUGGACAAUGGCAUACU	chr2:97525528-97525808(-)$1	280	189	216	24.9225
AUGAAGUAAAUUUGAAAGACUUUGAGC	chr16:8988306-8988581(-)$1	275	139	166	21.7562
GAGCAGACAUCUUGUUAUCCUGCUUUG	chr6:26285195-26285490(-)$1	295	151	178	24.7178
GCAGUGUCCUUCCUGACAGCACUUGCC	chr10:75002716-75003024(-)$1	308	115	142	22.6922
GACAGCAUGGAGCAGGGAUGGGCUGUC	chr3:49052709-49052995(+)$1	286	57	84	18.8746
AUUGACUUUAAAUAAUUUUGUCUAAUG	chr11:93463410-93463694(-)$1	284	188	215	23.5138
GGGGUGUUCACCUCUCUUCUCAUCCCU	chr6:32083307-32083600(-)$1	293	229	256	24.2867
CAUUGCUGUCACCAAUAAAGGCAUGGA	chr20:2815948-2816247(-)$1	299	245	272	24.0988
CCAGGCUGGAGAGGUUGGGGCCGGGGU	chr3:9957729-9958013(+)$1	284	59	86	22.3432
agcugugacauuGGGGGCCUAGGCUGG	chr7:73007711-73007949(-)$1	238	74	101	23.0751

#DB
..(((((...........)))))((.(	chr22:29696052-29696267(+)$1	1	18	45	19.7853
(((((................))))).	chr11:767303-767632(-)$1	1	293	320	20.2168
((((((..............)))))))	chr14:23528019-23528243(-)$1	1	93	120	24.2867
(((((.(...........).))))..)	chr12:112194488-112194787(+)$1	1	105	132	22.1815
(((((..............))))))))	chr19:2754925-2755226(-)$1	1	11	38	22.1193
((.((((............)))).)))	chr1:11721883-11722195(+)$1	1	92	119	23.2676
((((((...............))))))	chr2:27422411-27422623(-)$1	1	117	144	19.3107
....((..............))..)))	chr16:31202221-31202496(+)$1	1	219	246	20.2094
((((((.............)))))).)	chr17:27069558-27069858(+)$1	1	81	108	23.1503
((((((............))))))..(	chr14:24105822-24106030(+)$1	1	40	67	20.6152
(((.(((............))))))))	chr17:79780235-79780512(-)$1	1	125	152	24.3258
(((((((............)))))..)	chr20:39803899-39804117(+)$1	1	125	152	23.2150
.((((((...........)))))).((	chr14:70238515-70238771(+)$1	1	49	76	20.0855
(((.(((.............)))))).	chr19:55602293-55602591(-)$1	1	271	298	23.2526
((((.((...........)).))))).	chr20:25655287-25655585(-)$1	1	159	186	21.9847
..(((((...........))))).(((	chr2:98272478-98272728(-)$1	1	28	55	19.1673
..(((((...........)))))...)	chr3:49051487-49051745(+)$1	1	56	83	21.9761
(((.(((...........))).)))..	chr17:73231095-73231398(+)$1	1	169	196	23.4085
((((((..............)))))))	chr9:117069955-117070158(+)$1	1	131	158	24.2867
(((((((............))).))).	chr2:190339965-190340297(+)$1	1	256	283	24.4383
((((((..............)))))))	chr9:117069902-117070130(+)$1	1	184	211	24.2867
(((((((...........).)))))))	chr3:184101241-184101465(+)$1	1	57	84	22.4750
((((((..............)))))))	chr12:48366827-48367073(-)$1	1	70	97	24.2867
((.(((................))).)	chr20:34291866-34292123(-)$1	1	224	251	21.5629
(((((((............)))))))(	chr16:2581235-2581470(+)$1	1	24	51	24.0292
((.(((............))).))(((	chr4:762034-762294(-)$1	1	37	64	21.5014
(((((((...........).)))))))	chr3:184101265-184101488(+)$1	1	33	60	22.4750
((((((...............))))))	chr1:1322387-1322631(-)$1	1	178	205	19.3107
(((((.............)))))))))	chr5:6599459-6599732(-)$1	1	119	146	22.4459
((((((.............))))))))	chr11:831435-831761(+)$1	1	35	62	22.5907
((((((..............)))....	chr11:47738642-47738897(-)$1	1	138	165	21.6815
(((((((...........))))...))	chr5:179041582-179041808(-)$1	1	194	221	22.1440
((.(((..............))).)))	chr6:99847864-99848085(-)$1	1	37	64	23.1466
((.(((..............))).)))	chr2:201775250-201775486(-)$1	1	71	98	23.5002
((((((..............)))))))	chr12:51453435-51453699(+)$1	1	59	86	24.2867
((..(((...........)))..)).)	chr5:73923266-73923571(-)$1	1	40	67	22.0280
(((((((...........)))))))))	chr9:139757174-139757417(-)$1	1	139	166	21.2488
((((((.............))))))).	chr2:85772126-85772334(+)$1	1	108	135	25.0047
..((((..............)))).))	chr8:21939475-21939697(+)$1	1	123	150	22.2284
(((((((............))))))))	chr1:40766483-40766806(-)$1	1	271	298	22.0379
((((((.............))))))).	chr2:85772115-85772320(+)$1	1	11	38	24.5569
((((.((...........)))))))))	chr20:43565190-43565466(+)$1	1	196	223	22.7725
.((((((...........)))))).))	chr1:156219409-156219672(-)$1	1	42	69	22.0228
(((.(((............))))))))	chr1:156354605-156354866(+)$1	1	110	137	23.9570
((.(((................)))))	chr15:65108111-65108421(-)$1	1	110	137	21.2098
(...(((.............)))....	chr17:7128175-7128377(+)$1	1	167	194	23.4825
((((..(...........)..))))).	chr7:73007749-73007967(-)$1	1	92	119	23.0751
.(((((.............)))))...	chr3:184107172-184107440(+)$1	1	162	189	21.7612
.(((((.............))))))))	chr17:48631511-48631740(+)$1	1	135	162	23.6192
((.(((.............))).))))	chr2:97525528-97525808(-)$1	1	189	216	24.9225
.((((((...........)))))).))	chr16:8988306-8988581(-)$1	1	139	166	21.7562
((((((.............)))))))(	chr6:26285195-26285490(-)$1	1	151	178	24.7178
(((((((...........)))).))))	chr10:75002716-75003024(-)$1	1	115	142	22.6922
((((((...............))))))	chr3:49052709-49052995(+)$1	1	57	84	18.8746
((((((.............))).))))	chr11:93463410-93463694(-)$1	1	188	215	23.5138
((((((..............)))))))	chr6:32083307-32083600(-)$1	1	229	256	24.2867
(((.(((............))))))))	chr20:2815948-2816247(-)$1	1	245	272	24.0988
((.((((...........)))).))).	chr3:9957729-9958013(+)$1	1	59	86	22.3432
((((..(...........)..))))).	chr7:73007711-73007949(-)$1	1	74	101	23.0751

#PSSM
g : 0.25	e : 0.15	c : 0.11	f : 0.08	h : 0.08	: : 0.05	d : 0.05	$ : 0.03	b : 0.03	! : 0.03	[ : 0.03	= : 0.03	i : 0.01	% : 0.01	
g : 0.23	e : 0.16	f : 0.13	c : 0.13	d : 0.06	h : 0.06	: : 0.03	$ : 0.03	b : 0.03	= : 0.03	! : 0.01	i : 0.01	" : 0.01	
g : 0.23	e : 0.22	[ : 0.13	f : 0.11	c : 0.08	h : 0.06	d : 0.05	$ : 0.01	! : 0.01	i : 0.01	" : 0.01	= : 0.01	
g : 0.22	e : 0.18	c : 0.15	d : 0.10	f : 0.10	[ : 0.08	h : 0.06	$ : 0.01	! : 0.01	i : 0.01	" : 0.01	= : 0.01	
c : 0.27	g : 0.22	e : 0.13	d : 0.10	f : 0.10	h : 0.06	[ : 0.03	! : 0.03	b : 0.01	= : 0.01	
c : 0.27	g : 0.22	e : 0.10	d : 0.08	f : 0.08	h : 0.06	b : 0.05	! : 0.03	y : 0.01	[ : 0.01	w : 0.01	v : 0.01	= : 0.01	
w : 0.20	v : 0.16	c : 0.13	a : 0.08	e : 0.06	d : 0.06	y : 0.05	x : 0.05	f : 0.05	u : 0.03	b : 0.03	g : 0.03	h : 0.01	
t : 0.32	w : 0.20	v : 0.20	u : 0.16	y : 0.05	x : 0.05	
t : 0.32	w : 0.20	v : 0.20	u : 0.16	y : 0.05	x : 0.05	
t : 0.32	w : 0.20	v : 0.20	u : 0.16	y : 0.05	x : 0.05	
t : 0.32	w : 0.20	v : 0.20	u : 0.16	y : 0.05	x : 0.05	
t : 0.32	w : 0.20	v : 0.20	u : 0.16	y : 0.05	x : 0.05	
t : 0.32	w : 0.20	v : 0.20	u : 0.16	y : 0.05	x : 0.05	
t : 0.32	w : 0.20	v : 0.20	u : 0.16	y : 0.05	x : 0.05	
t : 0.32	w : 0.20	v : 0.20	u : 0.16	y : 0.05	x : 0.05	
t : 0.32	w : 0.20	v : 0.20	u : 0.16	y : 0.05	x : 0.05	
t : 0.32	w : 0.20	v : 0.20	u : 0.16	y : 0.05	x : 0.05	
t : 0.32	w : 0.20	v : 0.20	u : 0.16	y : 0.05	x : 0.05	
w : 0.20	v : 0.18	u : 0.13	a : 0.08	e : 0.06	f : 0.06	y : 0.05	x : 0.05	c : 0.05	d : 0.05	b : 0.03	g : 0.01	
w : 0.18	c : 0.15	e : 0.11	f : 0.10	g : 0.08	d : 0.06	y : 0.05	] : 0.05	x : 0.05	v : 0.03	b : 0.03	h : 0.03	2 : 0.03	
c : 0.23	g : 0.18	e : 0.11	d : 0.10	f : 0.10	h : 0.06	y : 0.05	x : 0.05	2 : 0.03	b : 0.01	] : 0.01	i : 0.01	
g : 0.22	e : 0.18	c : 0.18	d : 0.10	f : 0.10	h : 0.06	] : 0.03	y : 0.03	b : 0.01	2 : 0.01	i : 0.01	= : 0.01	
g : 0.22	e : 0.20	c : 0.15	f : 0.11	] : 0.08	h : 0.06	d : 0.05	2 : 0.03	b : 0.01	3 : 0.01	i : 0.01	= : 0.01	
g : 0.23	e : 0.13	c : 0.13	f : 0.11	h : 0.06	b : 0.05	d : 0.05	] : 0.05	3 : 0.03	= : 0.03	2 : 0.01	: : 0.01	6 : 0.01	i : 0.01	4 : 0.01	
g : 0.23	c : 0.15	e : 0.11	d : 0.06	h : 0.06	f : 0.05	] : 0.05	b : 0.03	2 : 0.03	: : 0.03	3 : 0.03	6 : 0.03	= : 0.03	G : 0.01	i : 0.01	4 : 0.01	
g : 0.22	e : 0.11	c : 0.11	h : 0.10	d : 0.08	] : 0.05	f : 0.05	2 : 0.03	4 : 0.03	6 : 0.03	= : 0.03	[ : 0.01	: : 0.01	3 : 0.01	G : 0.01	D : 0.01	i : 0.01	b : 0.01	
g : 0.15	d : 0.10	f : 0.10	h : 0.10	e : 0.08	] : 0.08	c : 0.06	b : 0.05	4 : 0.05	6 : 0.05	: : 0.03	= : 0.03	F : 0.01	H : 0.01	G : 0.01	D : 0.01	i : 0.01	

#score	1330.2950742551734
#seq	59
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_transcript_m1_run2.txt

#BEAR
dddd[eeeeennnnneeeee]dddd	chr17:20772643-20772926(+)$1	283	175	200	8.5805
d[ccc"""cccmmmmccc333cccd	chr11:62621991-62622218(-)$1	227	43	68	8.1960
fffff!!cccnnnnnccc22fffff	chr1:63833241-63833466(+)$1	225	18	43	10.0428
!!eeeee[bbnnnnnbb]eeeee22	chr11:17097263-17097497(-)$1	234	164	189	9.4681
:==========mmmm==========	chrM:1433-1645(+)$1	212	138	163	9.4859
ceeeee[cccooooooccc]eeeee	chr3:197901260-197901513(+)$1	253	122	147	8.5102
##a[ffffffnnnnnffffff]a33	chr11:93454751-93454985(+)$1	234	65	90	10.2468
ff[gggggggmmmmggggggg4444	chr6:16266314-16266540(+)$1	226	188	213	8.6562
eeeeecccbbnnnnnbb]ccc4444	chr22:38882100-38882389(-)$1	289	105	130	9.5455
h[dddd[cccnnnnnccc]dddd]h	chr11:122929979-122930223(-)$1	244	193	218	9.2124
:iiiiiiiiinnnnniiiiiiiii:	chr11:122929940-122930179(-)$1	239	212	237	10.3156
ca[ffffffooooooffffff]a]c	chr1:109289280-109289510(+)$1	230	65	90	8.0005
dddda!!cccnnnnnccc22a]ddd	chr2:133015207-133015423(-)$1	216	24	49	9.5609
gg!!ffffffooooooffffff333	chr2:97559946-97560198(-)$1	252	174	199	8.9127
c[eeeee[bbnnnnnbb22eeeee]	chr12:6054310-6054520(-)$1	210	48	73	9.1243
===========mmmm==========	chrX:118921214-118921428(-)$1	214	64	89	10.4853
gg!!ffffffooooooffffff333	chr2:97559862-97560146(-)$1	284	122	147	8.9127
:==========mmmm==========	chrM:1453-1659(+)$1	206	118	143	9.4859
!!hhhhhhhhnnnnnhhhhhhhh22	chr20:26189713-26189920(-)$1	207	130	155	8.5257
ggggggg[bbnnnnnbb]ggggggg	chr1:145442444-145442652(+)$1	208	99	124	10.5200
ggggggg[ccclllccc333ggggg	chr19:46701103-46701356(-)$1	253	176	201	9.1347
==========mmmm==========:	chr2:133015127-133015371(-)$1	244	204	229	9.3079
###gggggggnnnnngggggggeee	chr11:126146120-126146361(+)$1	241	142	167	10.8962
!!hhhhhhhhnnnnnhhhhhhhh22	chr20:26189693-26189913(-)$1	220	123	148	8.5257
fffff[ddddnnnnndddd]fffff	chr20:26189854-26190071(-)$1	217	102	127	8.7021
=======[cccmmmmccc]======	chrM:14361-14591(-)$1	230	94	119	10.1894
!eeeeeddddnnnnndddd333eee	chr11:122929544-122929765(-)$1	221	90	115	9.1755
ggg"""eeeeemmmmeeeeeggggg	chr13:92788009-92788232(+)$1	223	118	143	7.6170
a####eeeeennnnneeeee333a]	chr19:1409153-1409394(+)$1	241	170	195	10.3296
gggggbb[cccmmmmccc]bb]ggg	chr11:17097223-17097463(-)$1	240	52	77	7.7412
ee$$$$$cccooooooccc4444ee	chr1:173835344-173835551(-)$1	207	73	98	7.8921
fffff[ddddnnnnndddd]fffff	chr20:26189871-26190123(-)$1	252	154	179	8.7021
[bb[eeeeeooooooeeeee22bb]	chr19:8550671-8550944(+)$1	273	49	74	7.1628
ccc!!eeeeennnnneeeee]ccc]	chr9:33952672-33952926(-)$1	254	216	241	10.2450
:iiiiiiiiinnnnniiiiiiiiiE	chr5:134259775-134260015(+)$1	240	199	224	10.1082
ffff[ccc[annnnna]ccc]ffff	chr7:151845069-151845315(-)$1	246	152	177	9.7956
====="""cccmmmmccc22=====	chr10:135272188-135272430(+)$1	242	46	71	9.4470
iiiiiiiii[ammmma]iiiiiiii	chr3:10362532-10362784(-)$1	252	82	107	9.7180
ee$$$$$cccooooooccc4444ee	chr1:173835351-173835567(-)$1	216	89	114	7.8921
===========mmmm==========	chrX:118921228-118921462(-)$1	234	98	123	10.4853
==========mmmm==========:	chr20:26180052-26180259(-)$1	207	53	78	9.3079
!!hhhhhhhhnnnnnhhhhhhhh22	chr12:6054295-6054510(-)$1	215	176	201	8.5257
ff[gggggggmmmmggggggg4444	chr6:16266340-16266583(+)$1	243	162	187	8.6562
b]eeeeecccnnnnncccddddlll	chr19:8550833-8551095(+)$1	262	113	138	8.2952
fff!!eeeeennnnneeeee]ffff	chr4:83816905-83817175(-)$1	270	225	250	9.5827
ccc[ffffffnnnnnffffffccc4	chr19:13262240-13262471(+)$1	231	123	148	9.6522
==========nnnnn==========	chr7:72368316-72368572(+)$1	256	137	162	12.7878
[ccc!!cccccclllccc]ccc666	chr8:48650427-48650635(-)$1	208	60	85	7.3253

#otherMatches

#Seq PSSM
cgaugaagaaaacaguuuuugguug	chr17:20772643-20772926(+)$1	283	175	200	8.5805
ACGUUACUGUCAGAUGAUUUGAAUU	chr11:62621991-62622218(-)$1	227	43	68	8.1960
GCGGAAGGCCGGAGGGGCAGUCCGC	chr1:63833241-63833466(+)$1	225	18	43	10.0428
cugagugaGCUUUAUGUGCAUUCUC	chr11:17097263-17097497(-)$1	234	164	189	9.4681
GUAAGUGUACUGGAAAGUGCACUUG	chrM:1433-1645(+)$1	212	138	163	9.4859
gguuuaggguuaggguACUGUAAAU	chr3:197901260-197901513(+)$1	253	122	147	8.5102
AAGGGCAUAUGUCUGgugugugugu	chr11:93454751-93454985(+)$1	234	65	90	10.2468
ugaggcuucauuccugaagucagug	chr6:16266314-16266540(+)$1	226	188	213	8.6562
GGCAGUGGCUAUGGAAGUCCAAAUU	chr22:38882100-38882389(-)$1	289	105	130	9.5455
ACAGGAGCUAUGUACUGGGUUUUCU	chr11:122929979-122930223(-)$1	244	193	218	9.2124
GUCCAGGCAGCCAUCUUGUCUGGAG	chr11:122929940-122930179(-)$1	239	212	237	10.3156
GCAGUGUCGGGAAGAUGGCGCCGCC	chr1:109289280-109289510(+)$1	230	65	90	8.0005
GCGGCCAGGCCCCCUGCCCAGACCG	chr2:133015207-133015423(-)$1	216	24	49	9.5609
AGCUGGGUAUGUUUGGGUACCCCUC	chr2:97559946-97560198(-)$1	252	174	199	8.9127
gagcugagcCGCGAUGGAAUUAGCC	chr12:6054310-6054520(-)$1	210	48	73	9.1243
GAUUUUGCCUUUAUGAGGGUAAAAU	chrX:118921214-118921428(-)$1	214	64	89	10.4853
AGCUGGGUAUGUUUGGGUACCCCUC	chr2:97559862-97560146(-)$1	284	122	147	8.9127
GUAAGUGUACUGGAAAGUGCACUUG	chrM:1453-1659(+)$1	206	118	143	9.4859
ACUCGGAGGUGCUUUGCCUCUGAAG	chr20:26189713-26189920(-)$1	207	130	155	8.5257
UAUAUUUUGUACUUAACCAGAUAUA	chr1:145442444-145442652(+)$1	208	99	124	10.5200
gcucaggaguucaagacaagccugg	chr19:46701103-46701356(-)$1	253	176	201	9.1347
CGUUAUGGUAGCGCUGCCGUGGCGA	chr2:133015127-133015371(-)$1	244	204	229	9.3079
GUUCGUAACCGCACUGGUUGUGGCA	chr11:126146120-126146361(+)$1	241	142	167	10.8962
ACUCGGAGGUGCUUUGCCUCUGAAG	chr20:26189693-26189913(-)$1	220	123	148	8.5257
CGCCCCUCCCACGCGGGGAAGGGCG	chr20:26189854-26190071(-)$1	217	102	127	8.7021
UUAGGGGGAAUGAUGGUUGUCUUUG	chrM:14361-14591(-)$1	230	94	119	10.1894
ucguaguuuccaccagaaagucuua	chr11:122929544-122929765(-)$1	221	90	115	9.1755
UUUUAGGUAGAAUUGUCUAUAAAGG	chr13:92788009-92788232(+)$1	223	118	143	7.6170
UGAACGUGGGCCCGCUCCACCCAAG	chr19:1409153-1409394(+)$1	241	170	195	10.3296
ugugaugaugguuuuccaacauucg	chr11:17097223-17097463(-)$1	240	52	77	7.7412
AUUUAAUCAUGAAGAGAUGUACUAU	chr1:173835344-173835551(-)$1	207	73	98	7.8921
CGCCCCUCCCACGCGGGGAAGGGCG	chr20:26189871-26190123(-)$1	252	154	179	8.7021
AGCGCAUGGGCCAGACCAUGGAGCG	chr19:8550671-8550944(+)$1	273	49	74	7.1628
AGAUUGAAAGUACCCCUUUCUUCUG	chr9:33952672-33952926(-)$1	254	216	241	10.2450
GUUUUUUUAAUUUAUUUGGGGGGAA	chr5:134259775-134260015(+)$1	240	199	224	10.1082
GAACAAGGCCAUGAAGACCUGGUUC	chr7:151845069-151845315(-)$1	246	152	177	9.7956
UGCCUCUGGCCAGUAGGUGUGGGUG	chr10:135272188-135272430(+)$1	242	46	71	9.4470
GUGAAGGCCACGGUCGCGGCCUUCA	chr3:10362532-10362784(-)$1	252	82	107	9.7180
AUUUAAUCAUGAAGAGAUGUACUAU	chr1:173835351-173835567(-)$1	216	89	114	7.8921
GAUUUUGCCUUUAUGAGGGUAAAAU	chrX:118921228-118921462(-)$1	234	98	123	10.4853
uuuuaaaugaauucuuauuuaaaac	chr20:26180052-26180259(-)$1	207	53	78	9.3079
GGUCUCCUACAGGUGGUAGGAGGGA	chr12:6054295-6054510(-)$1	215	176	201	8.5257
ugaggcuucauuccugaagucagug	chr6:16266340-16266583(+)$1	243	162	187	8.6562
CCCCGUGAUGGAUCGCAUGGCCACC	chr19:8550833-8551095(+)$1	262	113	138	8.2952
CCUUUGAAUGUUUUUCGUUUUAGGA	chr4:83816905-83817175(-)$1	270	225	250	9.5827
UGUAUGCAGGGUCGUUCUGCAGCGU	chr19:13262240-13262471(+)$1	231	123	148	9.6522
gcugaggugagagaaucgcuuuagc	chr7:72368316-72368572(+)$1	256	137	162	12.7878
GGCCGAGCCAGGGGCCCUAGGCGAG	chr8:48650427-48650635(-)$1	208	60	85	7.3253

#DB
((((.(((((.....))))).))))	chr17:20772643-20772926(+)$1	1	175	200	8.5805
(.(((...(((....)))...))))	chr11:62621991-62622218(-)$1	1	43	68	8.1960
(((((..(((.....)))..)))))	chr1:63833241-63833466(+)$1	1	18	43	10.0428
..(((((.((.....)).)))))..	chr11:17097263-17097497(-)$1	1	164	189	9.4681
.((((((((((....))))))))))	chrM:1433-1645(+)$1	1	138	163	9.4859
((((((.(((......))).)))))	chr3:197901260-197901513(+)$1	1	122	147	8.5102
..(.((((((.....)))))).)..	chr11:93454751-93454985(+)$1	1	65	90	10.2468
((.(((((((....)))))))....	chr6:16266314-16266540(+)$1	1	188	213	8.6562
((((((((((.....)).)))....	chr22:38882100-38882389(-)$1	1	105	130	9.5455
(.((((.(((.....))).)))).)	chr11:122929979-122930223(-)$1	1	193	218	9.2124
.(((((((((.....))))))))).	chr11:122929940-122930179(-)$1	1	212	237	10.3156
((.((((((......)))))).).)	chr1:109289280-109289510(+)$1	1	65	90	8.0005
(((((..(((.....)))..).)))	chr2:133015207-133015423(-)$1	1	24	49	9.5609
((..((((((......))))))...	chr2:97559946-97560198(-)$1	1	174	199	8.9127
(.(((((.((.....))..))))).	chr12:6054310-6054520(-)$1	1	48	73	9.1243
(((((((((((....))))))))))	chrX:118921214-118921428(-)$1	1	64	89	10.4853
((..((((((......))))))...	chr2:97559862-97560146(-)$1	1	122	147	8.9127
.((((((((((....))))))))))	chrM:1453-1659(+)$1	1	118	143	9.4859
..((((((((.....))))))))..	chr20:26189713-26189920(-)$1	1	130	155	8.5257
(((((((.((.....)).)))))))	chr1:145442444-145442652(+)$1	1	99	124	10.5200
(((((((.(((...)))...)))))	chr19:46701103-46701356(-)$1	1	176	201	9.1347
((((((((((....)))))))))).	chr2:133015127-133015371(-)$1	1	204	229	9.3079
...(((((((.....))))))))))	chr11:126146120-126146361(+)$1	1	142	167	10.8962
..((((((((.....))))))))..	chr20:26189693-26189913(-)$1	1	123	148	8.5257
(((((.((((.....)))).)))))	chr20:26189854-26190071(-)$1	1	102	127	8.7021
(((((((.(((....))).))))))	chrM:14361-14591(-)$1	1	94	119	10.1894
.(((((((((.....))))...)))	chr11:122929544-122929765(-)$1	1	90	115	9.1755
(((...(((((....))))))))))	chr13:92788009-92788232(+)$1	1	118	143	7.6170
(....(((((.....)))))...).	chr19:1409153-1409394(+)$1	1	170	195	10.3296
(((((((.(((....))).)).)))	chr11:17097223-17097463(-)$1	1	52	77	7.7412
((.....(((......)))....))	chr1:173835344-173835551(-)$1	1	73	98	7.8921
(((((.((((.....)))).)))))	chr20:26189871-26190123(-)$1	1	154	179	8.7021
.((.(((((......)))))..)).	chr19:8550671-8550944(+)$1	1	49	74	7.1628
(((..(((((.....))))).))).	chr9:33952672-33952926(-)$1	1	216	241	10.2450
.(((((((((.....))))))))))	chr5:134259775-134260015(+)$1	1	199	224	10.1082
((((.(((.(.....).))).))))	chr7:151845069-151845315(-)$1	1	152	177	9.7956
(((((...(((....)))..)))))	chr10:135272188-135272430(+)$1	1	46	71	9.4470
(((((((((.(....).))))))))	chr3:10362532-10362784(-)$1	1	82	107	9.7180
((.....(((......)))....))	chr1:173835351-173835567(-)$1	1	89	114	7.8921
(((((((((((....))))))))))	chrX:118921228-118921462(-)$1	1	98	123	10.4853
((((((((((....)))))))))).	chr20:26180052-26180259(-)$1	1	53	78	9.3079
..((((((((.....))))))))..	chr12:6054295-6054510(-)$1	1	176	201	8.5257
((.(((((((....)))))))....	chr6:16266340-16266583(+)$1	1	162	187	8.6562
).)))))(((.....)))((((...	chr19:8550833-8551095(+)$1	1	113	138	8.2952
(((..(((((.....))))).))))	chr4:83816905-83817175(-)$1	1	225	250	9.5827
(((.((((((.....))))))))).	chr19:13262240-13262471(+)$1	1	123	148	9.6522
((((((((((.....))))))))))	chr7:72368316-72368572(+)$1	1	137	162	12.7878
.(((..((((((...))).)))...	chr8:48650427-48650635(-)$1	1	60	85	7.3253

#PSSM
f : 0.14	= : 0.14	g : 0.12	! : 0.10	c : 0.10	: : 0.08	d : 0.06	e : 0.06	# : 0.04	[ : 0.04	h : 0.02	a : 0.02	i : 0.02	b : 0.02	
= : 0.18	f : 0.14	g : 0.12	e : 0.10	! : 0.08	[ : 0.06	# : 0.06	i : 0.06	c : 0.06	d : 0.04	a : 0.02	b : 0.02	] : 0.02	
= : 0.18	e : 0.12	f : 0.10	c : 0.08	g : 0.08	d : 0.06	[ : 0.06	i : 0.06	h : 0.06	! : 0.04	# : 0.04	$ : 0.04	a : 0.02	b : 0.02	
= : 0.18	e : 0.12	g : 0.12	f : 0.10	! : 0.08	d : 0.06	[ : 0.06	i : 0.06	h : 0.06	c : 0.04	$ : 0.04	" : 0.02	# : 0.02	
= : 0.18	f : 0.16	e : 0.14	g : 0.12	i : 0.06	h : 0.06	! : 0.06	[ : 0.04	$ : 0.04	c : 0.02	d : 0.02	a : 0.02	" : 0.02	# : 0.02	
e : 0.20	= : 0.16	f : 0.10	g : 0.10	" : 0.06	! : 0.06	i : 0.06	h : 0.06	c : 0.04	[ : 0.04	$ : 0.04	d : 0.02	b : 0.02	
e : 0.18	= : 0.16	f : 0.10	g : 0.10	c : 0.06	i : 0.06	h : 0.06	d : 0.06	" : 0.04	! : 0.04	[ : 0.04	$ : 0.04	b : 0.02	
c : 0.20	= : 0.14	e : 0.12	[ : 0.12	f : 0.10	g : 0.06	i : 0.06	h : 0.06	d : 0.06	" : 0.04	
c : 0.27	= : 0.14	e : 0.12	f : 0.10	b : 0.08	g : 0.06	i : 0.06	h : 0.06	d : 0.06	[ : 0.02	
c : 0.27	= : 0.14	e : 0.10	b : 0.08	f : 0.08	g : 0.06	h : 0.06	d : 0.06	i : 0.04	o : 0.04	a : 0.02	[ : 0.02	
n : 0.52	o : 0.14	c : 0.12	= : 0.08	m : 0.08	e : 0.02	a : 0.02	
n : 0.52	m : 0.29	o : 0.14	l : 0.02	c : 0.02	
n : 0.52	m : 0.29	o : 0.14	l : 0.04	
n : 0.52	m : 0.29	o : 0.14	l : 0.04	
n : 0.52	m : 0.20	o : 0.14	g : 0.04	= : 0.04	c : 0.02	l : 0.02	
c : 0.20	= : 0.14	e : 0.12	o : 0.10	b : 0.08	f : 0.06	g : 0.06	h : 0.06	d : 0.06	i : 0.04	a : 0.04	
c : 0.27	= : 0.14	e : 0.12	f : 0.10	b : 0.08	g : 0.06	h : 0.06	d : 0.06	i : 0.04	] : 0.04	
c : 0.27	= : 0.14	e : 0.12	f : 0.10	] : 0.06	g : 0.06	i : 0.06	h : 0.06	d : 0.06	2 : 0.02	3 : 0.02	
e : 0.14	= : 0.14	c : 0.10	f : 0.10	2 : 0.08	g : 0.08	] : 0.08	d : 0.08	i : 0.06	h : 0.06	3 : 0.04	
e : 0.16	= : 0.16	f : 0.10	g : 0.08	3 : 0.06	2 : 0.06	] : 0.06	c : 0.06	i : 0.06	h : 0.06	d : 0.04	4 : 0.04	b : 0.02	
= : 0.18	f : 0.16	g : 0.12	] : 0.08	3 : 0.06	e : 0.06	i : 0.06	h : 0.06	c : 0.04	d : 0.04	4 : 0.04	a : 0.02	b : 0.02	2 : 0.02	
= : 0.18	f : 0.14	4 : 0.10	c : 0.08	] : 0.08	g : 0.08	d : 0.06	e : 0.06	i : 0.06	h : 0.06	3 : 0.04	2 : 0.02	
= : 0.18	f : 0.10	e : 0.10	4 : 0.10	g : 0.08	d : 0.06	c : 0.06	i : 0.06	3 : 0.06	h : 0.06	a : 0.04	b : 0.02	l : 0.02	6 : 0.02	
= : 0.18	e : 0.12	f : 0.10	2 : 0.08	g : 0.08	c : 0.06	3 : 0.06	4 : 0.06	i : 0.06	d : 0.04	] : 0.04	a : 0.02	b : 0.02	l : 0.02	6 : 0.02	
= : 0.14	f : 0.10	e : 0.10	2 : 0.08	4 : 0.08	] : 0.08	g : 0.08	d : 0.06	3 : 0.06	: : 0.06	h : 0.02	c : 0.02	E : 0.02	i : 0.02	l : 0.02	6 : 0.02	

#score	442.9911874332543
#seq	48
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF545FMX_NPM1_transcript_m3_run2.txt

#BEAR
:eeeeennnnneeeee	chr4:174253124-174253379(-)$1	255	193	209	9.3927
eeeeeooooooeeeee	chr2:232325435-232325678(-)$1	243	171	187	10.7153
ceeeeemmmmeeeee7	chr20:17943256-17943502(-)$1	246	107	123	9.4441
:eeeeemmmmeeeee:	chr10:64573518-64573735(-)$1	217	153	169	8.8064
!eeeeennnnneeeee	chr4:83816904-83817114(-)$1	210	168	184	9.9501
deeeeeooooooeeee	chr1:205688578-205688877(-)$1	299	34	50	10.1981
eeeeeooooooeeeee	chr17:18965256-18965544(+)$1	288	96	112	10.7153
ggggggoooooogggg	chr9:100777544-100777870(+)$1	326	85	101	5.8427
[eeeeemmmmeeeee]	chr2:61764756-61765004(-)$1	248	118	134	9.9226
ceeeeennnnneeeee	chr20:17943321-17943552(-)$1	231	164	180	9.9057
deeeeemmmmeeeeed	chr6:31958180-31958383(+)$1	203	65	81	9.7741
:eeeeemmmmeeeee:	chr9:139565004-139565226(+)$1	222	149	165	8.8064
eeeeeooooooeeeee	chr4:174252984-174253324(-)$1	340	180	196	10.7153
eee[bbmmmmbbeeee	chr19:893482-893690(+)$1	208	3	19	6.9279
ceeeeennnnneeeee	chr20:17943302-17943521(-)$1	219	133	149	9.9057
:eeeeemmmmeeeee:	chr2:232326226-232326502(-)$1	276	45	61	8.8064
eeeeeooooooeeeee	chr2:232326150-232326374(-)$1	224	181	197	10.7153
:eeeeemmmmeeeee:	chr10:64573514-64573718(-)$1	204	136	152	8.8064
eeeeeooooooeeeee	chr19:8538961-8539228(+)$1	267	126	142	10.7153

#otherMatches

#Seq PSSM
AGGCAAUUAUUUUGCU	chr4:174253124-174253379(-)$1	255	193	209	9.3927
AGCCAAGAACGUGGCu	chr2:232325435-232325678(-)$1	243	171	187	10.7153
CUGAGACCCAUCUCAC	chr20:17943256-17943502(-)$1	246	107	123	9.4441
CCUGGGGGGCCCCAGU	chr10:64573518-64573735(-)$1	217	153	169	8.8064
UGAAUGUUUUUCGUUU	chr4:83816904-83817114(-)$1	210	168	184	9.9501
UACAUUAAGUUAGAUG	chr1:205688578-205688877(-)$1	299	34	50	10.1981
guugcuuggcugcaac	chr17:18965256-18965544(+)$1	288	96	112	10.7153
UUUUGUUACUGUACag	chr9:100777544-100777870(+)$1	326	85	101	5.8427
GGGGGAAGCGUCCCUG	chr2:61764756-61765004(-)$1	248	118	134	9.9226
CCAUCUCACAAAGAUG	chr20:17943321-17943552(-)$1	231	164	180	9.9057
accagauucuuuuggg	chr6:31958180-31958383(+)$1	203	65	81	9.7741
CGCUGAGACCUCAGCC	chr9:139565004-139565226(+)$1	222	149	165	8.8064
AUACUAGCUUCAGUAU	chr4:174252984-174253324(-)$1	340	180	196	10.7153
gcucgcuucggcagca	chr19:893482-893690(+)$1	208	3	19	6.9279
CCAUCUCACAAAGAUG	chr20:17943302-17943521(-)$1	219	133	149	9.9057
AUGGCAAGAAUGCCAA	chr2:232326226-232326502(-)$1	276	45	61	8.8064
GGGAUCAACAUAUUCC	chr2:232326150-232326374(-)$1	224	181	197	10.7153
CCUGGGGGGCCCCAGU	chr10:64573514-64573718(-)$1	204	136	152	8.8064
GGGUCGAUUUGGAUCU	chr19:8538961-8539228(+)$1	267	126	142	10.7153

#DB
.(((((.....)))))	chr4:174253124-174253379(-)$1	1	193	209	9.3927
(((((......)))))	chr2:232325435-232325678(-)$1	1	171	187	10.7153
((((((....))))).	chr20:17943256-17943502(-)$1	1	107	123	9.4441
.(((((....))))).	chr10:64573518-64573735(-)$1	1	153	169	8.8064
.(((((.....)))))	chr4:83816904-83817114(-)$1	1	168	184	9.9501
)(((((......))))	chr1:205688578-205688877(-)$1	1	34	50	10.1981
(((((......)))))	chr17:18965256-18965544(+)$1	1	96	112	10.7153
((((((......))))	chr9:100777544-100777870(+)$1	1	85	101	5.8427
.(((((....))))).	chr2:61764756-61765004(-)$1	1	118	134	9.9226
)(((((.....)))))	chr20:17943321-17943552(-)$1	1	164	180	9.9057
)(((((....)))))(	chr6:31958180-31958383(+)$1	1	65	81	9.7741
.(((((....))))).	chr9:139565004-139565226(+)$1	1	149	165	8.8064
(((((......)))))	chr4:174252984-174253324(-)$1	1	180	196	10.7153
(((.((....))))))	chr19:893482-893690(+)$1	1	3	19	6.9279
)(((((.....)))))	chr20:17943302-17943521(-)$1	1	133	149	9.9057
.(((((....))))).	chr2:232326226-232326502(-)$1	1	45	61	8.8064
(((((......)))))	chr2:232326150-232326374(-)$1	1	181	197	10.7153
.(((((....))))).	chr10:64573514-64573718(-)$1	1	136	152	8.8064
(((((......)))))	chr19:8538961-8539228(+)$1	1	126	142	10.7153

#PSSM
e : 0.31	: : 0.26	c : 0.15	d : 0.10	! : 0.05	g : 0.05	[ : 0.05	
e : 0.94	g : 0.05	
e : 0.94	g : 0.05	
e : 0.89	g : 0.05	[ : 0.05	
e : 0.89	g : 0.05	b : 0.05	
e : 0.63	o : 0.26	g : 0.05	b : 0.05	
m : 0.42	o : 0.36	n : 0.21	
m : 0.42	o : 0.36	n : 0.21	
m : 0.42	o : 0.36	n : 0.21	
m : 0.42	o : 0.36	n : 0.21	
o : 0.36	e : 0.36	n : 0.21	b : 0.05	
e : 0.84	o : 0.10	b : 0.05	
e : 0.94	g : 0.05	
e : 0.94	g : 0.05	
e : 0.94	g : 0.05	
e : 0.57	: : 0.21	7 : 0.05	g : 0.05	] : 0.05	d : 0.05	

#score	180.06647551857364
#seq	19
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_UTR_m1_run1.txt

#BEAR
a[bb####dddd[aooooooa]dddd>>>>>>>>	chr9:123638030-123638293(-)$1	263	51	85	10.4092
ee[ccca[ffffffooooooffffff]a333ccc	chr16:89981290-89981535(+)$1	245	184	218	10.5630
mmmmdddd::ddddoooooodddd==========	chr19:5140266-5140589(+)$1	323	14	48	10.8322
iiii[a[ddddddddnnnnndddd]dddd]a]ii	chr12:125398883-125399120(-)$1	237	5	39	12.3949
a[dddd[gggggggoooooogggggggdddd]a]	chr5:179050127-179050360(-)$1	233	8	42	11.8960
e!!bb[a[dddd[aooooooa]dddda]bb22ee	chr1:228327931-228328179(+)$1	248	43	77	11.2723
bb[ccc!!iiiiiiiiillliiiiiiiii22ccc	chr19:49606058-49606297(+)$1	239	118	152	10.2215
==========oooooo==================	chr8:33370956-33371162(+)$1	206	24	58	12.6840
dddd==========oooooo==============	chr8:33370931-33371148(+)$1	217	45	79	14.9993
=========[ddddmmmmdddd333=========	chr17:72912792-72913089(-)$1	297	87	121	14.5346
ffffff[ddddcccooooooccc22dddd]ffff	chr17:42401880-42402159(-)$1	279	194	228	11.3832
:dddddddd[ddddoooooodddd]dddd22ddd	chr6:31508840-31509044(-)$1	204	156	190	11.5844
dddd[dddd[ddddoooooodddddddd]dddd:	chrX:154003010-154003284(+)$1	274	9	43	11.1485
Deeeee[bb[ddddnnnnndddd]bbeeeeeggg	chr17:8076658-8076902(-)$1	244	62	96	10.8359
[dddddddd[ddddoooooodddd]dddd22ddd	chr6:31508813-31509030(-)$1	217	142	176	12.4276
!!ggggggg[ddddmmmmdddd]ggggggg]bb]	chr6:161574463-161574706(-)$1	243	29	63	11.4131
#ggggggg!!ddddrrrrrrrrrddddggggggg	chr11:122929515-122929717(-)$1	202	15	49	11.1913
==========oooooo==================	chr8:33370962-33371194(+)$1	232	18	52	12.6840
Deeeee[bb[ddddnnnnndddd]bbeeeeeggg	chr17:8076725-8076952(-)$1	227	112	146	10.8359
b!!ccc"""bb[bboooooobbbb4444ccc]bb	chr19:49605362-49605605(+)$1	243	173	207	10.6946
====!!ccc[ddddmmmmddddccc=========	chr17:48827967-48828254(+)$1	287	222	256	13.1396
cc!!dddd[cccrrrrrrrrrccc]dddd]ccc]	chr3:51533787-51534066(-)$1	279	144	178	9.3474
iiii[a[ddddddddnnnnndddd]dddd]a]ii	chr12:125398972-125399243(-)$1	271	128	162	12.3949
=============ccclllccc]===========	chr22:19929020-19929366(-)$1	346	226	260	13.9545
Deeeee[bb[ddddnnnnndddd]bbeeeeeggg	chr17:8076713-8076925(-)$1	212	85	119	10.8359
Deeeee[bb[ddddnnnnndddd]bbeeeeeggg	chr17:8076709-8076913(-)$1	204	73	107	10.8359
&&ddddgggggggaooooooa]ggggggg]dddd	chr19:54971678-54971949(+)$1	271	185	219	10.4520
f"""gggggggddddmmmmdddd22ggggggg]f	chr15:83424598-83424906(+)$1	308	110	144	11.0811
gg"""eeeee[ddddnnnnndddd]eeeeegggg	chr22:20067945-20068242(+)$1	297	142	176	11.0917
============[ccclllccc333=========	chr11:75111377-75111607(+)$1	230	16	50	14.1291
cc[ccc####ddddoooooodddd55555ccc]c	chr11:93464065-93464274(-)$1	209	19	53	10.1347
========="""cccnnnnnccc]==========	chr17:26903718-26903986(-)$1	268	1	35	14.3747
==========!!cccmmmmccc]==========]	chr1:178994961-178995236(+)$1	275	181	215	13.3510
Deeeee[bb[ddddnnnnndddd]bbeeeeeggg	chr17:8076752-8076957(-)$1	205	117	151	10.8359
$$$$a[a[a[a[bboooooobb]a]a]a]a6666	chr16:23478554-23478842(-)$1	288	115	149	10.1130
b[ffffff!!a[bboooooobb]a22ffffff]b	chr19:49605901-49606140(+)$1	239	65	99	10.5127
[ffffff[a[ddddmmmmdddd]a]ffffff]ee	chr19:2270196-2270448(+)$1	252	114	148	9.9431
:ggggggg!!ddddrrrrrrrrrddddggggggg	chr11:122929517-122929782(-)$1	265	80	114	10.3427
iiiiiiii####dddd"""dddd[==========	chr1:182360379-182360641(-)$1	262	146	180	11.2336
####bb!!dddd[aooooooa]dddd22bb4444	chr2:158731844-158732189(-)$1	345	55	89	11.6364
iiiiiii####cccooooooccc333iiiiiiii	chr14:70238174-70238467(+)$1	293	176	210	15.1713
=========[ddddoooooodddd]=========	chr16:89980231-89980509(+)$1	278	191	225	17.4430
gdddd[ccc[ddddnnnnnddddccc]ddddggg	chr17:76124556-76124809(-)$1	253	57	91	11.5488
c[ccc[a!!bb[a[aooooooa]a]bb22a]ccc	chr13:26828211-26828521(+)$1	310	148	182	11.3306
=========zzzzzzzzzzzzzzzzz========	chr12:56991291-56991554(-)$1	263	179	213	9.8630
c[ffffff!!ddddnnnnndddd22ffffff]cc	chr17:73775186-73775491(-)$1	305	136	170	11.4667
!!ggggggg!!ccclllccc22ggggggg4444a	chr11:93466532-93466785(-)$1	253	187	221	10.5118
bb[===========mmmm===========]bb:G	chr6:31937067-31937359(+)$1	292	239	273	9.8809
============[ccclllccc333=========	chr11:75111357-75111577(+)$1	220	36	70	14.1291
iiiiiiiii[bbcccooooooccc]bb]iiiiii	chr16:89627003-89627219(+)$1	216	45	79	13.2402

#otherMatches

#Seq PSSM
GGAGGAGACCCGAGUAGGCCCGCGGGGAAAGAGA	chr9:123638030-123638293(-)$1	263	51	85	10.4092
GGUCGCUGGUCCAGAAACACCUGGAUGGAAAGUG	chr16:89981290-89981535(+)$1	245	184	218	10.5630
GGAGGGGCUUGGCCGAUCAUGGCCUGGGCUGCAG	chr19:5140266-5140589(+)$1	323	14	48	10.8322
GGGCUGGCCGGGGCUUUCGUGGCCGCCGGGCCGC	chr12:125398883-125399120(-)$1	237	5	39	12.3949
CGCCGACAGCUGUUGCUCAGGACAGCUUUGGGGG	chr5:179050127-179050360(-)$1	233	8	42	11.8960
GGUUCAGUGGGCGGAAGAGGUGGCCCCGGAUGCU	chr1:228327931-228328179(+)$1	248	43	77	11.2723
UCUGAACCCGAGCGGGGUUCCUUCGCUUGACUUU	chr19:49606058-49606297(+)$1	239	118	152	10.2215
AACUAUAAGAUgauccuuuuguaguucaugagcg	chr8:33370956-33371162(+)$1	206	24	58	12.6840
UGUCAACUAUAAGAUgauccuuuuguaguucaug	chr8:33370931-33371148(+)$1	217	45	79	14.9993
augcaugugugugugugugcaugugugcgugugu	chr17:72912792-72913089(-)$1	297	87	121	14.5346
GGCGGCUCUCCGCCGUUCGGGGCCGGGAGUGUCG	chr17:42401880-42402159(-)$1	279	194	228	11.3832
GACUGAUGGCUGCUGAGUUAGGCAUCCAUAACGG	chr6:31508840-31509044(-)$1	204	156	190	11.5844
GGCACACUUGCUGCCUUGAUGCAGGAGUAUGUCA	chrX:154003010-154003284(+)$1	274	9	43	11.1485
gaugcaugaaacgugauuaacgucucugcguaau	chr17:8076658-8076902(-)$1	244	62	96	10.8359
GACUGAUGGCUGCUGAGUUAGGCAUCCAUAACGG	chr6:31508813-31509030(-)$1	217	142	176	12.4276
CUCAGGGCUGUAUGUAACCAUGGGGCCCUGUGUG	chr6:161574463-161574706(-)$1	243	29	63	11.4131
cgcuaugaugauggauuccaaaaccauucguagu	chr11:122929515-122929717(-)$1	202	15	49	11.1913
AACUAUAAGAUgauccuuuuguaguucaugagcg	chr8:33370962-33371194(+)$1	232	18	52	12.6840
gaugcaugaaacgugauuaacgucucugcguaau	chr17:8076725-8076952(-)$1	227	112	146	10.8359
GUCGCCCCCGUAGCCUCCCCGCACCCAUGGCCCU	chr19:49605362-49605605(+)$1	243	173	207	10.6946
UGUAGUCCUGCAAAACAUUUUGAGGUACAUUGUU	chr17:48827967-48828254(+)$1	287	222	256	13.1396
UCGGGGGGGGGCAGCGGCGGAGCCGCCUCGGACG	chr3:51533787-51534066(-)$1	279	144	178	9.3474
GGGCUGGCCGGGGCUUUCGUGGCCGCCGGGCCGC	chr12:125398972-125399243(-)$1	271	128	162	12.3949
GGGUGUCCCCGUGGGGGUGCCCACGCGGGGGUGU	chr22:19929020-19929366(-)$1	346	226	260	13.9545
gaugcaugaaacgugauuaacgucucugcguaau	chr17:8076713-8076925(-)$1	212	85	119	10.8359
gaugcaugaaacgugauuaacgucucugcguaau	chr17:8076709-8076913(-)$1	204	73	107	10.8359
AUGGGGGGGCCUCCCCGCUCGUGGGGCCCUCCCC	chr19:54971678-54971949(+)$1	271	185	219	10.4520
AAAAUAGAGUCCUUGAAAUCAAGCUGACUCUGCU	chr15:83424598-83424906(+)$1	308	110	144	11.0811
CUccggggcuggggggcgggccccgggcccAGGC	chr22:20067945-20068242(+)$1	297	142	176	11.0917
UAGAGCAGUUUCUUGUUUUGCAUGUGGAACUGUU	chr11:75111377-75111607(+)$1	230	16	50	14.1291
CAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGU	chr11:93464065-93464274(-)$1	209	19	53	10.1347
GGUGUGGUCAGGGCGGGGCAUGCAGGCCACGCCC	chr17:26903718-26903986(-)$1	268	1	35	14.3747
ggcugccccuccccggaggcggcgggggcggccg	chr1:178994961-178995236(+)$1	275	181	215	13.3510
gaugcaugaaacgugauuaacgucucugcguaau	chr17:8076752-8076957(-)$1	205	117	151	10.8359
uguguguguguguguguguUCGGGGAGAGGGUGG	chr16:23478554-23478842(-)$1	288	115	149	10.1130
CUCCCUAAAGUGCAUGGAAUUGGGGCUUGGGGUG	chr19:49605901-49606140(+)$1	239	65	99	10.5127
CGAGCGUGCGCUGCGGGAGCGGGGAGCGCUUUGC	chr19:2270196-2270448(+)$1	252	114	148	9.9431
cgcuaugaugauggauuccaaaaccauucguagu	chr11:122929517-122929782(-)$1	265	80	114	10.3427
CCUGCGCCCUGGGGCUCGCAGUGGUUUGUUUGCG	chr1:182360379-182360641(-)$1	262	146	180	11.2336
CCGCGGAACAAAACUGUCUUGCUUUGGGCCUGAA	chr2:158731844-158732189(-)$1	345	55	89	11.6364
GUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUA	chr14:70238174-70238467(+)$1	293	176	210	15.1713
gcgcauacguguguggguaaacauuuguaugugc	chr16:89980231-89980509(+)$1	278	191	225	17.4430
UUGCGGGGCACAGGUGAGCCCUGGCUGCGCGCGC	chr17:76124556-76124809(-)$1	253	57	91	11.5488
GAGGCGUGAGUGCGCGUGUGAGAGGACGAGAGCC	chr13:26828211-26828521(+)$1	310	148	182	11.3306
agcgcgcgcugugugugugugugugugugcgugC	chr12:56991291-56991554(-)$1	263	179	213	9.8630
CGGUGGGGCCAGGAUCUGUUCCUCCCCCCGCAGC	chr17:73775186-73775491(-)$1	305	136	170	11.4667
UAUGAAAAACCAGAUAAUCUACUUUUUUACCUUA	chr11:93466532-93466785(-)$1	253	187	221	10.5118
GCAGGGCUCUCAGGGACCCCUGAGGGCCUGGUGG	chr6:31937067-31937359(+)$1	292	239	273	9.8809
UAGAGCAGUUUCUUGUUUUGCAUGUGGAACUGUU	chr11:75111357-75111577(+)$1	220	36	70	14.1291
CGGCCCUGCUAUCAUCCCAGAGUGCAUUGCGGGG	chr16:89627003-89627219(+)$1	216	45	79	13.2402

#DB
(.((....((((.(......).))))........	chr9:123638030-123638293(-)$1	1	51	85	10.4092
((.((((.((((((......)))))).)...)))	chr16:89981290-89981535(+)$1	1	184	218	10.5630
....))))..((((......))))((((((((((	chr19:5140266-5140589(+)$1	1	14	48	10.8322
((((.(.((((((((.....)))).)))).).))	chr12:125398883-125399120(-)$1	1	5	39	12.3949
(.((((.(((((((......))))))))))).).	chr5:179050127-179050360(-)$1	1	8	42	11.8960
(..((.(.((((.(......).))))).))..))	chr1:228327931-228328179(+)$1	1	43	77	11.2723
((.(((..(((((((((...)))))))))..)))	chr19:49606058-49606297(+)$1	1	118	152	10.2215
((((((((((......))))))))))((((((((	chr8:33370956-33371162(+)$1	1	24	58	12.6840
))))((((((((((......))))))))))((((	chr8:33370931-33371148(+)$1	1	45	79	14.9993
(((((((((.((((....))))...)))))))))	chr17:72912792-72913089(-)$1	1	87	121	14.5346
((((((.(((((((......)))..)))).))))	chr17:42401880-42402159(-)$1	1	194	228	11.3832
.((((((((.((((......)))).))))..)))	chr6:31508840-31509044(-)$1	1	156	190	11.5844
((((.((((.((((......)))))))).)))).	chrX:154003010-154003284(+)$1	1	9	43	11.1485
((((((.((.((((.....)))).)))))))(((	chr17:8076658-8076902(-)$1	1	62	96	10.8359
.((((((((.((((......)))).))))..)))	chr6:31508813-31509030(-)$1	1	142	176	12.4276
..(((((((.((((....)))).))))))).)).	chr6:161574463-161574706(-)$1	1	29	63	11.4131
.(((((((..((((.........)))))))))))	chr11:122929515-122929717(-)$1	1	15	49	11.1913
((((((((((......))))))))))((((((((	chr8:33370962-33371194(+)$1	1	18	52	12.6840
((((((.((.((((.....)))).)))))))(((	chr17:8076725-8076952(-)$1	1	112	146	10.8359
(..(((...((.((......))))....))).))	chr19:49605362-49605605(+)$1	1	173	207	10.6946
((((..(((.((((....))))))))))))))))	chr17:48827967-48828254(+)$1	1	222	256	13.1396
((..((((.(((.........))).)))).))).	chr3:51533787-51534066(-)$1	1	144	178	9.3474
((((.(.((((((((.....)))).)))).).))	chr12:125398972-125399243(-)$1	1	128	162	12.3949
((((((((((((((((...))).)))))))))))	chr22:19929020-19929366(-)$1	1	226	260	13.9545
((((((.((.((((.....)))).)))))))(((	chr17:8076713-8076925(-)$1	1	85	119	10.8359
((((((.((.((((.....)))).)))))))(((	chr17:8076709-8076913(-)$1	1	73	107	10.8359
..((((((((((((......).))))))).))))	chr19:54971678-54971949(+)$1	1	185	219	10.4520
(...(((((((((((....))))..))))))).)	chr15:83424598-83424906(+)$1	1	110	144	11.0811
((...(((((.((((.....)))).)))))))))	chr22:20067945-20068242(+)$1	1	142	176	11.0917
((((((((((((.(((...)))...)))))))))	chr11:75111377-75111607(+)$1	1	16	50	14.1291
((.(((....((((......)))).....))).)	chr11:93464065-93464274(-)$1	1	19	53	10.1347
(((((((((...(((.....))).))))))))))	chr17:26903718-26903986(-)$1	1	1	35	14.3747
((((((((((..(((....))).)))))))))).	chr1:178994961-178995236(+)$1	1	181	215	13.3510
((((((.((.((((.....)))).)))))))(((	chr17:8076752-8076957(-)$1	1	117	151	10.8359
....(.(.(.(.((......)).).).).)....	chr16:23478554-23478842(-)$1	1	115	149	10.1130
(.((((((..(.((......)).)..)))))).)	chr19:49605901-49606140(+)$1	1	65	99	10.5127
.((((((.(.((((....)))).).)))))).))	chr19:2270196-2270448(+)$1	1	114	148	9.9431
.(((((((..((((.........)))))))))))	chr11:122929517-122929782(-)$1	1	80	114	10.3427
((((((((....((((...((((.((((((((((	chr1:182360379-182360641(-)$1	1	146	180	11.2336
....((..((((.(......).))))..))....	chr2:158731844-158732189(-)$1	1	55	89	11.6364
(((((((....(((......)))...))))))))	chr14:70238174-70238467(+)$1	1	176	210	15.1713
(((((((((.((((......)))).)))))))))	chr16:89980231-89980509(+)$1	1	191	225	17.4430
)((((.(((.((((.....))))))).))))(((	chr17:76124556-76124809(-)$1	1	57	91	11.5488
(.(((.(..((.(.(......).).))..).)))	chr13:26828211-26828521(+)$1	1	148	182	11.3306
(((((((((.................))))))))	chr12:56991291-56991554(-)$1	1	179	213	9.8630
(.((((((..((((.....))))..)))))).))	chr17:73775186-73775491(-)$1	1	136	170	11.4667
..(((((((..(((...)))..)))))))....)	chr11:93466532-93466785(-)$1	1	187	221	10.5118
((.(((((((((((....))))))))))).)).)	chr6:31937067-31937359(+)$1	1	239	273	9.8809
((((((((((((.(((...)))...)))))))))	chr11:75111357-75111577(+)$1	1	36	70	14.1291
(((((((((.(((((......))).)).))))))	chr16:89627003-89627219(+)$1	1	45	79	13.2402

#PSSM
= : 0.21	i : 0.10	D : 0.10	b : 0.08	c : 0.08	a : 0.04	e : 0.04	d : 0.04	f : 0.04	: : 0.04	[ : 0.04	! : 0.04	# : 0.04	g : 0.04	m : 0.02	& : 0.02	$ : 0.02	
= : 0.21	e : 0.12	[ : 0.10	i : 0.10	d : 0.10	! : 0.08	g : 0.06	b : 0.04	f : 0.04	c : 0.04	m : 0.02	& : 0.02	" : 0.02	$ : 0.02	# : 0.02	
= : 0.21	d : 0.14	i : 0.10	e : 0.10	[ : 0.08	f : 0.08	g : 0.08	! : 0.06	" : 0.04	b : 0.02	m : 0.02	$ : 0.02	# : 0.02	c : 0.02	
= : 0.23	d : 0.14	c : 0.10	i : 0.10	e : 0.10	f : 0.08	g : 0.08	b : 0.04	" : 0.04	m : 0.02	! : 0.02	$ : 0.02	# : 0.02	
= : 0.23	d : 0.14	c : 0.10	e : 0.10	g : 0.10	f : 0.08	[ : 0.06	i : 0.06	b : 0.04	# : 0.02	! : 0.02	" : 0.02	a : 0.02	
= : 0.23	d : 0.14	e : 0.12	g : 0.10	c : 0.08	[ : 0.08	f : 0.08	i : 0.06	a : 0.04	# : 0.02	! : 0.02	b : 0.02	
= : 0.23	[ : 0.18	g : 0.12	d : 0.10	a : 0.08	f : 0.06	i : 0.06	# : 0.04	! : 0.04	c : 0.04	" : 0.02	e : 0.02	
= : 0.23	d : 0.16	g : 0.14	b : 0.10	[ : 0.08	# : 0.06	! : 0.06	c : 0.04	f : 0.04	i : 0.04	" : 0.02	e : 0.02	
= : 0.23	d : 0.18	g : 0.10	b : 0.10	! : 0.10	# : 0.06	i : 0.04	c : 0.04	a : 0.04	f : 0.02	: : 0.02	" : 0.02	[ : 0.02	e : 0.02	
[ : 0.32	= : 0.16	d : 0.12	! : 0.10	g : 0.06	# : 0.06	b : 0.04	f : 0.02	: : 0.02	i : 0.02	c : 0.02	e : 0.02	" : 0.02	z : 0.02	
d : 0.50	= : 0.10	g : 0.06	b : 0.06	o : 0.04	! : 0.04	a : 0.04	# : 0.04	f : 0.02	i : 0.02	c : 0.02	[ : 0.02	" : 0.02	z : 0.02	
d : 0.52	= : 0.10	c : 0.08	[ : 0.08	g : 0.04	o : 0.04	f : 0.02	i : 0.02	" : 0.02	! : 0.02	# : 0.02	z : 0.02	b : 0.02	
d : 0.48	c : 0.12	[ : 0.10	= : 0.06	b : 0.06	g : 0.04	o : 0.04	f : 0.02	i : 0.02	r : 0.02	a : 0.02	z : 0.02	
d : 0.48	c : 0.18	a : 0.08	b : 0.06	o : 0.04	= : 0.04	f : 0.02	g : 0.02	i : 0.02	r : 0.02	[ : 0.02	z : 0.02	
o : 0.40	n : 0.14	c : 0.12	d : 0.10	m : 0.10	r : 0.06	i : 0.02	a : 0.02	z : 0.02	l : 0.02	
o : 0.44	n : 0.21	m : 0.14	r : 0.06	c : 0.06	i : 0.02	d : 0.02	z : 0.02	l : 0.02	
o : 0.40	n : 0.21	m : 0.14	l : 0.08	r : 0.06	= : 0.04	i : 0.02	" : 0.02	z : 0.02	
o : 0.40	n : 0.21	m : 0.14	l : 0.08	r : 0.06	= : 0.04	" : 0.02	z : 0.02	c : 0.02	
o : 0.40	n : 0.21	l : 0.08	d : 0.08	= : 0.06	r : 0.06	m : 0.04	" : 0.02	z : 0.02	c : 0.02	
o : 0.40	d : 0.25	c : 0.10	n : 0.08	= : 0.06	r : 0.06	l : 0.02	z : 0.02	
d : 0.44	c : 0.14	a : 0.08	= : 0.08	r : 0.06	b : 0.06	o : 0.04	f : 0.02	g : 0.02	i : 0.02	z : 0.02	2 : 0.02	
d : 0.44	c : 0.18	] : 0.08	= : 0.08	b : 0.06	r : 0.04	f : 0.02	g : 0.02	i : 0.02	a : 0.02	z : 0.02	2 : 0.02	
d : 0.42	] : 0.14	c : 0.12	= : 0.08	g : 0.06	3 : 0.06	r : 0.04	f : 0.02	i : 0.02	b : 0.02	z : 0.02	
d : 0.27	= : 0.12	] : 0.12	g : 0.08	3 : 0.08	c : 0.08	a : 0.08	2 : 0.06	f : 0.02	i : 0.02	b : 0.02	[ : 0.02	z : 0.02	
] : 0.21	= : 0.18	d : 0.12	b : 0.10	g : 0.08	3 : 0.08	2 : 0.08	c : 0.04	f : 0.02	i : 0.02	4 : 0.02	5 : 0.02	z : 0.02	
= : 0.27	d : 0.23	b : 0.14	g : 0.10	f : 0.06	i : 0.02	4 : 0.02	e : 0.02	5 : 0.02	a : 0.02	2 : 0.02	3 : 0.02	c : 0.02	z : 0.02	
= : 0.30	d : 0.18	e : 0.12	g : 0.10	] : 0.06	f : 0.06	i : 0.04	b : 0.04	> : 0.02	a : 0.02	4 : 0.02	5 : 0.02	2 : 0.02	
= : 0.30	d : 0.18	e : 0.12	g : 0.12	f : 0.06	a : 0.04	] : 0.04	i : 0.04	2 : 0.04	> : 0.02	4 : 0.02	5 : 0.02	
= : 0.30	d : 0.16	e : 0.12	g : 0.12	i : 0.06	f : 0.06	b : 0.04	] : 0.04	> : 0.02	3 : 0.02	c : 0.02	5 : 0.02	2 : 0.02	
= : 0.27	] : 0.12	e : 0.12	g : 0.08	d : 0.06	2 : 0.06	f : 0.06	b : 0.04	c : 0.04	a : 0.04	i : 0.04	> : 0.02	3 : 0.02	4 : 0.02	
= : 0.27	e : 0.10	d : 0.08	2 : 0.08	f : 0.08	g : 0.08	c : 0.06	a : 0.04	] : 0.04	4 : 0.04	i : 0.04	> : 0.02	3 : 0.02	6 : 0.02	b : 0.02	
= : 0.27	g : 0.19	] : 0.12	c : 0.10	d : 0.08	f : 0.04	b : 0.04	4 : 0.04	i : 0.04	> : 0.02	2 : 0.02	6 : 0.02	
= : 0.27	g : 0.18	c : 0.10	i : 0.08	d : 0.08	] : 0.06	e : 0.04	b : 0.04	4 : 0.04	> : 0.02	a : 0.02	f : 0.02	6 : 0.02	: : 0.02	
= : 0.25	g : 0.18	c : 0.10	i : 0.08	] : 0.08	d : 0.06	e : 0.04	f : 0.04	b : 0.04	> : 0.02	: : 0.02	6 : 0.02	4 : 0.02	a : 0.02	G : 0.02	

#score	588.3332441104498
#seq	50
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_CDS_m1_run2.txt

#BEAR
[ggggggg[a[bb[eeeeeooooooeeeeebba]ggggg	chr16:720283-720560(+)$1	277	67	106	15.0577
ggggggg!!ccc"""ddddoooooodddd]ccc22gggg	chr22:20112891-20113134(+)$1	243	68	107	16.6443
gggggggccc[eeeeebboooooobb333eeeee]ccc]	chr6:37138422-37138650(+)$1	228	70	109	14.0609
==!!dddd[dddd[ccc[aooooooa]cccdddddddd2	chr14:50292384-50292650(-)$1	266	54	93	16.1808
ggggggg"""ccc[bb[ccclllccc]bb22ccc22ggg	chr1:145440793-145441002(+)$1	209	152	191	15.0555
eeeee"""dddd"""ddddoooooodddd22dddd]eee	chr1:145439642-145439879(+)$1	237	181	220	14.5851
gg[bb[a"""ccc!!bb[aqqqqqqqqa]bb]ccc333a	chr14:104145831-104146108(+)$1	277	31	70	12.7499
f"""cccdddd[a[bb[bblllbbbb]a]dddd]cccff	chr11:71719548-71719813(-)$1	265	39	78	12.6293
:ccc"""ccc"""ffffffooooooffffff333ccccc	chr1:224619047-224619302(-)$1	255	215	254	13.1372
gggggg####ccc[ddddmmmmdddd]ccc4444ggggg	chr6:99852285-99852551(-)$1	266	61	100	13.5657
!!ccc[bb[dddd[bb[cccnnnnnccc22bb]dddd]b	chr5:86690674-86690930(-)$1	256	121	160	12.9968
!a[dddd"""ddddccc[bbmmmmbb]ccc333dddd44	chr1:44442813-44443073(+)$1	260	59	98	13.2241
[a[hhhhhhhh!!bb"""aooooooa333bb]hhhhhhh	chr3:50098912-50099160(+)$1	248	4	43	14.3779

#otherMatches

#Seq PSSM
CGUGGAGGUGAGUAGGUCCCAGGCAGGGCCGCCUCCUUC	chr16:720283-720560(+)$1	277	67	106	15.0577
GUGAGCCAAGGGCCCUGGGGACCUGCCUGACUUGGGGCU	chr22:20112891-20113134(+)$1	243	68	107	16.6443
GGGGAGCUGGCGGCUCGCGGGCCGGCACUGAGUCCCCGU	chr6:37138422-37138650(+)$1	228	70	109	14.0609
AAAAGUAUAUUGGUAAGUGUUCUGUCUCUUUCAAAUACA	chr14:50292384-50292650(-)$1	266	54	93	16.1808
GAGAGCCCAACCACUCCUCUGCUAGAUGACAUGGAUGGC	chr1:145440793-145441002(+)$1	209	152	191	15.0555
UGGGUGAAGGCUUUUCUUGACCGCCCGAGCCAGCCAACU	chr1:145439642-145439879(+)$1	237	181	220	14.5851
UGAGCGUAGAGUGGAACGGGGUAAGUACAGUACACAGCG	chr14:104145831-104146108(+)$1	277	31	70	12.7499
GAUCUGAGCUGCGAGGAGGGGACCCCACUCAGUAUCACC	chr11:71719548-71719813(-)$1	265	39	78	12.6293
GCCUAAAAGUAGUUAAAUUUCAUAUAAUUUGUAAACUAG	chr1:224619047-224619302(-)$1	255	215	254	13.1372
AAGCAACGAAAGGUAUAUUUUGGUGUUUCUGGUUUUGCU	chr6:99852285-99852551(-)$1	266	61	100	13.5657
GUGUGACUAUACUGUUAAGAUUUAUUCUCCAAGAGUACA	chr5:86690674-86690930(-)$1	256	121	160	12.9968
CGUCGCAAUUCUUCAGGUGAUGAAUCCCCUUGGGAAGCC	chr1:44442813-44443073(+)$1	260	59	98	13.2241
UGAUUCUGCUACUGGCUACUAUUAUGACCCCUUGGCAGG	chr3:50098912-50099160(+)$1	248	4	43	14.3779

#DB
.(((((((.(.((.(((((......)))))))).)))))	chr16:720283-720560(+)$1	1	67	106	15.0577
(((((((..(((...((((......)))).)))..))))	chr22:20112891-20113134(+)$1	1	68	107	16.6443
((((((((((.(((((((......))...))))).))).	chr6:37138422-37138650(+)$1	1	70	109	14.0609
((..((((.((((.(((.(......).))))))))))).	chr14:50292384-50292650(-)$1	1	54	93	16.1808
(((((((...(((.((.(((...))).))..)))..)))	chr1:145440793-145441002(+)$1	1	152	191	15.0555
(((((...((((...((((......))))..)))).)))	chr1:145439642-145439879(+)$1	1	181	220	14.5851
((.((.(...(((..((.(........).)).)))...)	chr14:104145831-104146108(+)$1	1	31	70	12.7499
(...(((((((.(.((.((...)))).).)))).)))))	chr11:71719548-71719813(-)$1	1	39	78	12.6293
.(((...(((...((((((......))))))...)))))	chr1:224619047-224619302(-)$1	1	215	254	13.1372
((((((....(((.((((....)))).)))....)))))	chr6:99852285-99852551(-)$1	1	61	100	13.5657
..(((.((.((((.((.(((.....)))..)).)))).)	chr5:86690674-86690930(-)$1	1	121	160	12.9968
.(.((((...(((((((.((....)).)))...))))..	chr1:44442813-44443073(+)$1	1	59	98	13.2241
.(.((((((((..((...(......)...)).)))))))	chr3:50098912-50099160(+)$1	1	4	43	14.3779

#PSSM
g : 0.38	[ : 0.15	! : 0.15	= : 0.07	e : 0.07	f : 0.07	: : 0.07	
g : 0.46	a : 0.15	= : 0.07	e : 0.07	" : 0.07	c : 0.07	! : 0.07	
g : 0.38	[ : 0.23	c : 0.15	! : 0.07	e : 0.07	" : 0.07	
g : 0.38	c : 0.15	! : 0.07	e : 0.07	b : 0.07	" : 0.07	d : 0.07	h : 0.07	
g : 0.38	d : 0.15	c : 0.15	e : 0.07	b : 0.07	" : 0.07	h : 0.07	
g : 0.38	d : 0.15	" : 0.15	[ : 0.15	c : 0.07	h : 0.07	
g : 0.30	d : 0.15	" : 0.15	a : 0.07	c : 0.07	# : 0.07	b : 0.07	h : 0.07	
" : 0.30	c : 0.15	d : 0.15	g : 0.07	! : 0.07	# : 0.07	b : 0.07	h : 0.07	
[ : 0.23	" : 0.23	c : 0.15	d : 0.15	! : 0.07	# : 0.07	h : 0.07	
d : 0.30	c : 0.23	" : 0.23	a : 0.07	# : 0.07	h : 0.07	
d : 0.38	c : 0.30	[ : 0.15	" : 0.07	h : 0.07	
c : 0.30	d : 0.30	b : 0.07	e : 0.07	[ : 0.07	" : 0.07	! : 0.07	
" : 0.23	d : 0.23	c : 0.23	b : 0.07	e : 0.07	a : 0.07	! : 0.07	
[ : 0.46	" : 0.15	e : 0.07	! : 0.07	f : 0.07	d : 0.07	b : 0.07	
b : 0.30	e : 0.15	" : 0.15	c : 0.15	! : 0.07	f : 0.07	d : 0.07	
b : 0.30	d : 0.23	e : 0.15	c : 0.15	f : 0.07	" : 0.07	
d : 0.23	[ : 0.23	b : 0.15	c : 0.15	e : 0.07	f : 0.07	" : 0.07	
d : 0.23	[ : 0.23	b : 0.15	c : 0.15	e : 0.07	f : 0.07	" : 0.07	
a : 0.23	d : 0.15	c : 0.15	b : 0.15	e : 0.07	o : 0.07	f : 0.07	m : 0.07	
o : 0.53	c : 0.15	q : 0.07	l : 0.07	m : 0.07	b : 0.07	
o : 0.53	l : 0.15	m : 0.15	q : 0.07	n : 0.07	
o : 0.53	l : 0.15	m : 0.15	q : 0.07	n : 0.07	
o : 0.53	l : 0.07	q : 0.07	b : 0.07	d : 0.07	n : 0.07	m : 0.07	
o : 0.53	c : 0.07	q : 0.07	b : 0.07	d : 0.07	n : 0.07	m : 0.07	
o : 0.46	b : 0.23	c : 0.07	q : 0.07	d : 0.07	n : 0.07	
d : 0.23	b : 0.23	a : 0.15	c : 0.15	e : 0.07	q : 0.07	f : 0.07	
] : 0.38	d : 0.15	3 : 0.15	e : 0.07	q : 0.07	f : 0.07	c : 0.07	
c : 0.30	d : 0.15	3 : 0.15	a : 0.15	e : 0.07	b : 0.07	f : 0.07	
c : 0.23	d : 0.15	3 : 0.15	] : 0.15	e : 0.07	b : 0.07	f : 0.07	2 : 0.07	
c : 0.23	2 : 0.23	e : 0.15	b : 0.15	] : 0.07	d : 0.07	f : 0.07	
b : 0.30	d : 0.15	2 : 0.15	c : 0.07	e : 0.07	f : 0.07	4 : 0.07	3 : 0.07	
d : 0.23	b : 0.15	c : 0.15	] : 0.15	3 : 0.15	e : 0.07	4 : 0.07	
c : 0.23	d : 0.23	3 : 0.15	a : 0.07	e : 0.07	4 : 0.07	] : 0.07	h : 0.07	
d : 0.30	] : 0.15	c : 0.15	2 : 0.07	e : 0.07	3 : 0.07	4 : 0.07	h : 0.07	
d : 0.30	c : 0.23	g : 0.15	2 : 0.15	] : 0.07	h : 0.07	
g : 0.23	c : 0.23	d : 0.23	2 : 0.07	] : 0.07	3 : 0.07	h : 0.07	
g : 0.30	c : 0.23	d : 0.23	e : 0.07	3 : 0.07	h : 0.07	
g : 0.30	c : 0.15	d : 0.07	e : 0.07	3 : 0.07	f : 0.07	] : 0.07	4 : 0.07	h : 0.07	
g : 0.30	] : 0.07	2 : 0.07	e : 0.07	a : 0.07	f : 0.07	c : 0.07	b : 0.07	4 : 0.07	h : 0.07	

#score	184.26573063532302
#seq	13
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_UTR_m3_run1.txt

#BEAR
c####eeeee[bboooooobb]eeeee4444cc	chr16:85706934-85707192(+)$1	258	127	160	12.3183
dddd[bb"""cccooooooccc333bb333ddd	chr1:17734677-17734931(-)$1	254	182	215	14.3404
hh!!ccc"""cccnnnnncccccchhhhhhhhc	chr9:137023894-137024200(+)$1	306	193	226	10.5482
d!!a[a!!a[ddddoooooodddd]a22a]a22	chr17:43225832-43226105(+)$1	273	223	256	12.5800
iii!!a!!bbrrrrrrrrrbb22a22iiiiiii	chr1:21069238-21069487(-)$1	249	76	109	10.4626
gg[dddd!!ddddoooooodddddddd]ggggg	chr7:150841058-150841425(+)$1	367	190	223	13.1721
[hhhhhhhh[cccooooooccc22hhhhhhhh]	chr6:32948761-32949036(+)$1	275	72	105	13.8448
!!ccc[bb!!ddddoooooodddd]bb]ccc44	chr16:67263228-67263496(-)$1	268	226	259	12.1496
ggggggg"""cccccclllccc]cccggggggg	chr17:61671454-61671720(+)$1	266	221	254	11.3508
hhhhhh"""cccrrrrrrrrrccc333hhhhhh	chr17:53470290-53470592(-)$1	302	137	170	9.8889
ddd"""bb!!cccooooooccc22bb]dddd22	chr7:150034796-150035049(+)$1	253	93	126	13.7510
[bb[bb[ffffffooooooffffffbb]bb]a]	chr1:155242902-155243208(-)$1	306	196	229	10.9374
####a[dddd[bboooooobb22dddd]agggg	chr1:197115423-197115672(-)$1	249	97	130	13.7618
hhhhhhhbb[cccoooooocccbb]hhhhhhhh	chr10:103541103-103541378(-)$1	275	123	156	12.9995
[hhhhhhhh[cccooooooccc]hhhhhhhhff	chr9:90346104-90346383(+)$1	279	11	44	13.5966
f[eeeeeddddbboooooobb]dddd22eeeee	chr19:42751754-42752035(-)$1	281	97	130	12.5259
hhhhhhh"""cccooooooccchhhhhhhh]ad	chr6:37142862-37143098(+)$1	236	30	63	13.6712
dd[ccc[cccrrrrrrrrrccc]ccc]ddddcc	chr8:11696181-11696444(+)$1	263	112	145	10.3117
eeee"""a[ddddnnnnndddd]a333eeeee]	chr2:231577499-231577806(+)$1	307	86	119	9.7976
fff!!hhhhhhhhoooooohhhhhhhhffffff	chr5:177022626-177022855(+)$1	229	170	203	11.0213
[bb!!bb[eeeeeooooooeeeee]bbbbeeee	chr8:22108182-22108492(+)$1	310	171	204	10.8409
c"""bb"""ccccccmmmmccc333ccc333bb	chr17:7093161-7093429(-)$1	268	107	140	9.9052
dd####gggggggooooooggggggg22dddd:	chr9:139006424-139006685(-)$1	261	9	42	11.9667
b[ccc[gggggggooooooggggggg333ccc2	chr19:34890967-34891206(+)$1	239	108	141	13.7854
e[ccc!!eeeeeaooooooa]eeeee]ccceee	chr6:30620690-30620944(+)$1	254	14	47	12.9948
"""bb!!ccccccooooooccc22ccc22bbhh	chr1:1270592-1270859(-)$1	267	221	254	13.8273
eeeee[cccddddoooooodddd333ccceeee	chr11:85989481-85989778(+)$1	297	142	175	13.4901
cccffffff!!bboooooobb333ffffff333	chrX:48750658-48750941(-)$1	283	139	172	13.3627
BB==========oooooo==========:ffff	chr3:5025362-5025602(+)$1	240	170	203	10.1204
ceeeee[bb[bbbboooooobb]bb]bbeeeee	chr11:64084820-64085088(-)$1	268	77	110	11.0111
eeeee[cccddddoooooodddd]ccc]eeeee	chr6:31827016-31827305(-)$1	289	173	206	13.2052
bdddd!!bb[cccooooooccc]bb22dddd]b	chr1:110950106-110950355(-)$1	249	27	60	13.6049
eee[bb$$$$$bboooooobb4444bb]eeeee	chr12:98992329-98992578(+)$1	249	17	50	13.1010
ggg[ccc[cccrrrrrrrrrcccccc]gggggg	chr3:50367394-50367644(-)$1	250	87	120	10.9259
c!!hhhhhhhhbboooooobb333hhhhhhhh]	chr19:7978277-7978565(+)$1	288	199	232	13.6820
b[ccc!!ffffffooooooffffff22ccc]bb	chr17:20905980-20906227(-)$1	247	22	55	12.1699
dd[ccc[ccc[bboooooobbccc]ccc]dddd	chr12:57910296-57910543(-)$1	247	113	146	14.1654
h!!bb[dddd!!aooooooa22dddd]bb22hh	chr17:38292751-38293109(+)$1	358	263	296	11.4692
ffffff####cccooooooccc4444ffffff:	chr19:6739617-6739884(+)$1	267	156	189	13.1018
]ccc]cccbb[bboooooobb22bbdddd!!gg	chr11:75283158-75283452(+)$1	294	76	109	12.4634
eeeee[dddd[abboooooobb]a]ddddeeee	chr8:30669801-30670092(-)$1	291	237	270	11.7273
ggggggg[a[cccooooooccc]a]ggggggg:	chr11:118964593-118964806(-)$1	213	114	147	15.0654
ddd[dddd!!cccooooooccc22dddd]dddd	chr9:91931440-91931672(+)$1	232	67	100	13.7654
]ccc]bbbb!!bboooooobb22bbccclllcc	chr11:75283098-75283358(+)$1	260	136	169	11.6210
eeeee[ccc[cccoooooocccccc]eeeeeff	chr5:314675-314949(+)$1	274	124	157	14.2877
mmmddddccccccooooooccc]ccc:ffffff	chr1:27860995-27861309(-)$1	314	214	247	11.1849
ggg[dddd!!ccclllccc4444ddddgggggg	chr22:50357241-50357497(+)$1	256	79	112	9.7171
fffff!!ccc[bboooooobb]ccc22ffffff	chr17:48211090-48211360(-)$1	270	133	166	13.3376
ccc[dddd"""bboooooobb333ddddcccbb	chr1:156109139-156109462(+)$1	323	100	133	14.0009
gggggg[bbddddoooooodddd22bbgggggg	chr19:1227764-1228022(+)$1	258	187	220	13.1298
bbccc"""bbcccooooooccc]bb333ccc::	chr19:47774861-47775197(+)$1	336	239	272	12.6914
a[eeeee[bb[aooooooa]bb]eeeeea333b	chrX:67945430-67945711(+)$1	281	191	224	11.4732
cc[a[ccc[ddddnnnnndddd]ccc]a]ccc2	chr16:81743461-81743731(+)$1	270	46	79	9.9253

#otherMatches

#Seq PSSM
UGUUGUUUUGGUUUUUUUUGGGCAAAAAAAAAA	chr16:85706934-85707192(+)$1	258	127	160	12.3183
GGACCAGCCAGCAGUCAAGUGCAUUCUCCAGUC	chr1:17734677-17734931(-)$1	254	182	215	14.3404
CCUUACUCCAGGUCAGAUGCCAGUGGGACUCAU	chr9:137023894-137024200(+)$1	306	193	226	10.5482
GGAAGCGACACCCGUGGAAGUGGGAGGAGGUGG	chr17:43225832-43226105(+)$1	273	223	256	12.5800
AAGAUGUUUGUUUCUUAUUCAUUCCACUUUUGU	chr1:21069238-21069487(-)$1	249	76	109	10.4626
CCAUUGAAAAGGGACAGGACCCUUCGGAGGUGC	chr7:150841058-150841425(+)$1	367	190	223	13.1721
UUUUGAGAUUGUUUGUUCUAAUUUAUUUUAAGC	chr6:32948761-32949036(+)$1	275	72	105	13.8448
UCCCCACCAGGCUGGGUUUGUAGCAGGAGGGAA	chr16:67263228-67263496(-)$1	268	226	259	12.1496
UGUCACUUUGGUCAUGUUCCAUAGACAGUGGCA	chr17:61671454-61671720(+)$1	266	221	254	11.3508
UGUUGAUUAAUCUCUCUUGUUGGUGUUUUAAUA	chr17:53470290-53470592(-)$1	302	137	170	9.8889
CCUCCACAUGCUGCAAGGACAGACUGAAGGGCU	chr7:150034796-150035049(+)$1	253	93	126	13.7510
ACGGGCCUCGCCGCCAGAACGGUGAGCGCGCGG	chr1:155242902-155243208(-)$1	306	196	229	10.9374
aaucugccauggcgaaccggcgaguggggcgag	chr1:197115423-197115672(-)$1	249	97	130	13.7618
GAGGGCCUGUGCUCCACACAGCCGUGGUUUUCU	chr10:103541103-103541378(-)$1	275	123	156	12.9995
ACACACUCGAAUCAUUGAAGAUCCGAGUGUGAU	chr9:90346104-90346383(+)$1	279	11	44	13.5966
AGCUGCUCCUAGGACUGGCCCAUGGGCAGGCGG	chr19:42751754-42752035(-)$1	281	97	130	12.5259
CUGUUUGUGGGGUGACGGGACUCAGGCGGGACA	chr6:37142862-37143098(+)$1	236	30	63	13.6712
GAAAGGGUGCCUCAUCCCAGCAACCUGUCCUUG	chr8:11696181-11696444(+)$1	263	112	145	10.3117
CCGCAAGCGGGGCGAGGGGUUCGGGGAGCGGCG	chr2:231577499-231577806(+)$1	307	86	119	9.7976
GGUUGGGGUAUGGUGCCUGUCAUACCCACCUGC	chr5:177022626-177022855(+)$1	229	170	203	11.0213
UCUUGGUGCCUGCUGGGUUGCAGGGGCAGGAAG	chr8:22108182-22108492(+)$1	310	171	204	10.8409
GGGGUCGGGGGUCGGGUGUCCGGGAGCCAGGGA	chr17:7093161-7093429(-)$1	268	107	140	9.9052
UUUCCUCAAAGAAGCUUUGUUUUUUGUUAACGU	chr9:139006424-139006685(-)$1	261	9	42	11.9667
CAGGGAAGGCUGGUCUCCCCCAGCCUAACCCCC	chr19:34890967-34891206(+)$1	239	108	141	13.7854
GAGUGGAGGCAGCACUGAAGACUGCUACGCCCa	chr6:30620690-30620944(+)$1	254	14	47	12.9948
CCUUCUCUCCGGCUGGGCUGCCUUGGAAUGAGG	chr1:1270592-1270859(-)$1	267	221	254	13.8273
AAUGUAUCUUGCUAGUAAGGGCACGUAGAGCAU	chr11:85989481-85989778(+)$1	297	142	175	13.4901
UGUACGAAGUUCUCACCCCAGCUCCUUUGUGUG	chrX:48750658-48750941(-)$1	283	139	172	13.3627
guguguguaugugcgugugcgugcacaugugug	chr3:5025362-5025602(+)$1	240	170	203	10.1204
UUUGUGCGGCGACAUGAAACUGCUUACCCACAA	chr11:64084820-64085088(-)$1	268	77	110	11.0111
UUGGUGUUGCGGUAAGAUAACCGACAGGGCUGG	chr6:31827016-31827305(-)$1	289	173	206	13.2052
CCCGCUCGCGUCAAGUGACUGAGGCCUGUGGUG	chr1:110950106-110950355(-)$1	249	27	60	13.6049
CAGUGCUGAAUUCUUUGCUGACAUUGCCCUGGC	chr12:98992329-98992578(+)$1	249	17	50	13.1010
UUGAGGAAGAGUCUUGGUUUCUCUCUACAGUGC	chr3:50367394-50367644(-)$1	250	87	120	10.9259
UGGCCCAGUCCACGUUGAGGUCCAGGACUGGGA	chr19:7978277-7978565(+)$1	288	199	232	13.6820
CCUCUGCACCUGGGACCCAUCGGGUCGGGAUGG	chr17:20905980-20906227(-)$1	247	22	55	12.1699
AGAGAUUGUACAUUUAUUUAUUACUGUCCCUAU	chr12:57910296-57910543(-)$1	247	113	146	14.1654
AUUGUAAAUAAACUAUUGUGGCUGUUAAUUUUU	chr17:38292751-38293109(+)$1	358	263	296	11.4692
UGGAUUGGGGCACUGAGCUGUGGGUAAGUCCAA	chr19:6739617-6739884(+)$1	267	156	189	13.1018
UGGGGUGGGGGUGGAAAAACAGACCGGGGUUCC	chr11:75283158-75283452(+)$1	294	76	109	12.4634
UGCGGACGCUGUGCGAGAAGGUGAGGGCGCCGC	chr8:30669801-30670092(-)$1	291	237	270	11.7273
GUUGGCUUCUGAACUGGAAUUCUGCAGCUAACC	chr11:118964593-118964806(-)$1	213	114	147	15.0654
CUGUAAGAUGUUUAAGAUAAAAGUUCUUCCAGU	chr9:91931440-91931672(+)$1	232	67	100	13.7654
UGGGGUGGGGGUGGAAAAACAGACCGGGGUUCC	chr11:75283098-75283358(+)$1	260	136	169	11.6210
CUGUAAUAGUAGCUGUAUCGUUCUAAUGCAGAC	chr5:314675-314949(+)$1	274	124	157	14.2877
GUAUGCACUGAGAAAUUUAUCUACAGGUCGUUU	chr1:27860995-27861309(-)$1	314	214	247	11.1849
CUCUCCCAAGCCCCAGGGGACAGUGGGGAGGCA	chr22:50357241-50357497(+)$1	256	79	112	9.7171
CGGCCACCCCUGCCCAGCCGUCGGGAGGGCCGC	chr17:48211090-48211360(-)$1	270	133	166	13.3376
GGCUAGCUUCUGCUUUUCUGCCCUGGCUGCUGC	chr1:156109139-156109462(+)$1	323	100	133	14.0009
GGCGGGUGUGGAGACCAGGCUCCUGACCCCGCC	chr19:1227764-1228022(+)$1	258	187	220	13.1298
GCGCAGCCCAUGCUCUUCUGUACUGUCAUGCCC	chr19:47774861-47775197(+)$1	336	239	272	12.6914
GUAGGGAGCCAGGUGCAGCAGGAUCCCUCAAAU	chrX:67945430-67945711(+)$1	281	191	224	11.4732
CUGUGAGAUAGAUGGGGAGUCUUUCUGGGGGCG	chr16:81743461-81743731(+)$1	270	46	79	9.9253

#DB
(....(((((.((......)).)))))....))	chr16:85706934-85707192(+)$1	1	127	160	12.3183
((((.((...(((......)))...))...)))	chr1:17734677-17734931(-)$1	1	182	215	14.3404
((..(((...(((.....))))))))))))))(	chr9:137023894-137024200(+)$1	1	193	226	10.5482
(..(.(..(.((((......)))).)..).)..	chr17:43225832-43226105(+)$1	1	223	256	12.5800
(((..(..((.........))..)..)))))))	chr1:21069238-21069487(-)$1	1	76	109	10.4626
((.((((..((((......)))))))).)))))	chr7:150841058-150841425(+)$1	1	190	223	13.1721
.((((((((.(((......)))..)))))))).	chr6:32948761-32949036(+)$1	1	72	105	13.8448
..(((.((..((((......)))).)).)))..	chr16:67263228-67263496(-)$1	1	226	259	12.1496
(((((((...((((((...))).))))))))))	chr17:61671454-61671720(+)$1	1	221	254	11.3508
((((((...(((.........)))...))))))	chr17:53470290-53470592(-)$1	1	137	170	9.8889
(((...((..(((......)))..)).))))..	chr7:150034796-150035049(+)$1	1	93	126	13.7510
.((.((.((((((......)))))))).)).).	chr1:155242902-155243208(-)$1	1	196	229	10.9374
....(.((((.((......))..)))).)))))	chr1:197115423-197115672(-)$1	1	97	130	13.7618
(((((((((.(((......))))).))))))))	chr10:103541103-103541378(-)$1	1	123	156	12.9995
.((((((((.(((......))).))))))))))	chr9:90346104-90346383(+)$1	1	11	44	13.5966
(.(((((((((((......)).))))..)))))	chr19:42751754-42752035(-)$1	1	97	130	12.5259
(((((((...(((......))))))))))).))	chr6:37142862-37143098(+)$1	1	30	63	13.6712
((.(((.(((.........))).))).))))))	chr8:11696181-11696444(+)$1	1	112	145	10.3117
((((...(.((((.....)))).)...))))).	chr2:231577499-231577806(+)$1	1	86	119	9.7976
(((..((((((((......))))))))))))))	chr5:177022626-177022855(+)$1	1	170	203	11.0213
.((..((.(((((......))))).))))))))	chr8:22108182-22108492(+)$1	1	171	204	10.8409
(...((...((((((....)))...)))...))	chr17:7093161-7093429(-)$1	1	107	140	9.9052
((....(((((((......)))))))..)))).	chr9:139006424-139006685(-)$1	1	9	42	11.9667
(.(((.(((((((......)))))))...))).	chr19:34890967-34891206(+)$1	1	108	141	13.7854
(.(((..((((((......).))))).))))))	chr6:30620690-30620944(+)$1	1	14	47	12.9948
...((..((((((......)))..)))..))))	chr1:1270592-1270859(-)$1	1	221	254	13.8273
(((((.(((((((......))))...)))))))	chr11:85989481-85989778(+)$1	1	142	175	13.4901
(((((((((..((......))...))))))...	chrX:48750658-48750941(-)$1	1	139	172	13.3627
))((((((((((......)))))))))).((((	chr3:5025362-5025602(+)$1	1	170	203	10.1204
((((((.((.((((......)).)).)))))))	chr11:64084820-64085088(-)$1	1	77	110	11.0111
(((((.(((((((......)))).))).)))))	chr6:31827016-31827305(-)$1	1	173	206	13.2052
(((((..((.(((......))).))..)))).)	chr1:110950106-110950355(-)$1	1	27	60	13.6049
(((.((.....((......))....)).)))))	chr12:98992329-98992578(+)$1	1	17	50	13.1010
(((.(((.(((.........)))))).))))))	chr3:50367394-50367644(-)$1	1	87	120	10.9259
(..((((((((((......))...)))))))).	chr19:7978277-7978565(+)$1	1	199	232	13.6820
(.(((..((((((......))))))..))).))	chr17:20905980-20906227(-)$1	1	22	55	12.1699
((.(((.(((.((......))))).))).))))	chr12:57910296-57910543(-)$1	1	113	146	14.1654
(..((.((((..(......)..)))).))..))	chr17:38292751-38293109(+)$1	1	263	296	11.4692
((((((....(((......)))....)))))).	chr19:6739617-6739884(+)$1	1	156	189	13.1018
.))).)))((.((......))..))((((..((	chr11:75283158-75283452(+)$1	1	76	109	12.4634
(((((.((((.(((......)).).))))))))	chr8:30669801-30670092(-)$1	1	237	270	11.7273
(((((((.(.(((......))).).))))))).	chr11:118964593-118964806(-)$1	1	114	147	15.0654
(((.((((..(((......)))..)))).))))	chr9:91931440-91931672(+)$1	1	67	100	13.7654
.))).))((..((......))..))(((...))	chr11:75283098-75283358(+)$1	1	136	169	11.6210
(((((.(((.(((......)))))).)))))((	chr5:314675-314949(+)$1	1	124	157	14.2877
...))))((((((......))).))).((((((	chr1:27860995-27861309(-)$1	1	214	247	11.1849
(((.((((..(((...)))....))))))))))	chr22:50357241-50357497(+)$1	1	79	112	9.7171
(((((..(((.((......)).)))..))))))	chr17:48211090-48211360(-)$1	1	133	166	13.3376
(((.((((...((......))...)))))))))	chr1:156109139-156109462(+)$1	1	100	133	14.0009
((((((.((((((......))))..))))))))	chr19:1227764-1228022(+)$1	1	187	220	13.1298
))(((...(((((......))).))...)))..	chr19:47774861-47775197(+)$1	1	239	272	12.6914
(.(((((.((.(......).)).))))))...)	chrX:67945430-67945711(+)$1	1	191	224	11.4732
((.(.(((.((((.....)))).))).).))).	chr16:81743461-81743731(+)$1	1	46	79	9.9253

#PSSM
c : 0.13	d : 0.13	e : 0.13	g : 0.11	h : 0.09	[ : 0.07	f : 0.07	b : 0.07	] : 0.03	i : 0.01	! : 0.01	# : 0.01	" : 0.01	B : 0.01	m : 0.01	a : 0.01	
d : 0.13	e : 0.13	h : 0.11	g : 0.11	[ : 0.09	c : 0.09	! : 0.07	b : 0.05	f : 0.05	# : 0.03	" : 0.03	i : 0.01	B : 0.01	m : 0.01	
c : 0.16	e : 0.16	h : 0.09	g : 0.09	d : 0.07	! : 0.07	[ : 0.07	# : 0.05	f : 0.05	b : 0.03	" : 0.03	i : 0.01	= : 0.01	m : 0.01	
c : 0.16	e : 0.15	h : 0.11	[ : 0.11	d : 0.07	! : 0.07	# : 0.05	g : 0.05	f : 0.05	a : 0.03	" : 0.03	b : 0.03	= : 0.01	
c : 0.16	e : 0.13	d : 0.11	h : 0.11	b : 0.09	[ : 0.05	! : 0.05	g : 0.05	f : 0.05	# : 0.03	" : 0.03	] : 0.03	a : 0.01	= : 0.01	
[ : 0.15	h : 0.13	b : 0.11	c : 0.11	d : 0.09	! : 0.09	e : 0.07	g : 0.05	" : 0.05	a : 0.03	f : 0.03	# : 0.01	= : 0.01	
d : 0.15	c : 0.13	! : 0.13	h : 0.11	b : 0.09	[ : 0.09	g : 0.07	" : 0.07	e : 0.05	f : 0.01	= : 0.01	$ : 0.01	# : 0.01	
c : 0.18	" : 0.13	b : 0.13	d : 0.13	h : 0.07	[ : 0.07	! : 0.05	f : 0.05	e : 0.03	g : 0.03	a : 0.01	= : 0.01	$ : 0.01	# : 0.01	
b : 0.16	c : 0.16	" : 0.13	! : 0.09	h : 0.07	d : 0.07	e : 0.05	f : 0.05	a : 0.03	[ : 0.03	g : 0.03	= : 0.01	$ : 0.01	# : 0.01	
d : 0.18	[ : 0.15	c : 0.15	! : 0.11	" : 0.09	b : 0.07	e : 0.05	f : 0.03	h : 0.03	g : 0.03	= : 0.01	$ : 0.01	# : 0.01	
c : 0.37	d : 0.16	[ : 0.13	! : 0.05	r : 0.03	f : 0.03	h : 0.03	e : 0.03	g : 0.03	= : 0.01	b : 0.01	$ : 0.01	" : 0.01	
c : 0.35	b : 0.22	d : 0.15	r : 0.05	f : 0.03	e : 0.03	g : 0.03	a : 0.03	h : 0.01	= : 0.01	! : 0.01	
c : 0.33	b : 0.24	d : 0.15	r : 0.07	f : 0.03	g : 0.03	a : 0.03	o : 0.03	h : 0.01	e : 0.01	
o : 0.73	r : 0.07	n : 0.05	d : 0.03	c : 0.03	b : 0.03	l : 0.01	
o : 0.81	r : 0.07	n : 0.05	c : 0.03	l : 0.01	
o : 0.81	r : 0.07	n : 0.05	c : 0.01	m : 0.01	l : 0.01	
o : 0.81	r : 0.07	n : 0.05	l : 0.01	m : 0.01	c : 0.01	
o : 0.81	r : 0.07	n : 0.05	l : 0.01	m : 0.01	c : 0.01	
o : 0.77	r : 0.07	c : 0.03	d : 0.03	l : 0.01	m : 0.01	= : 0.01	a : 0.01	
c : 0.33	b : 0.22	d : 0.11	o : 0.07	r : 0.03	f : 0.03	g : 0.03	a : 0.03	h : 0.01	e : 0.01	= : 0.01	4 : 0.01	] : 0.01	
c : 0.35	b : 0.28	d : 0.15	f : 0.03	g : 0.03	r : 0.01	h : 0.01	e : 0.01	] : 0.01	= : 0.01	2 : 0.01	4 : 0.01	
c : 0.39	d : 0.15	2 : 0.09	] : 0.05	3 : 0.05	b : 0.05	f : 0.03	e : 0.03	g : 0.03	4 : 0.03	h : 0.01	= : 0.01	
] : 0.22	d : 0.15	2 : 0.15	c : 0.11	3 : 0.09	e : 0.05	4 : 0.05	f : 0.03	h : 0.03	g : 0.03	b : 0.01	= : 0.01	
c : 0.18	d : 0.13	3 : 0.11	b : 0.11	2 : 0.09	e : 0.07	a : 0.07	h : 0.05	f : 0.03	g : 0.03	4 : 0.03	= : 0.01	] : 0.01	
c : 0.16	] : 0.13	d : 0.13	h : 0.11	b : 0.11	3 : 0.09	e : 0.05	f : 0.05	2 : 0.03	g : 0.03	4 : 0.03	= : 0.01	
c : 0.18	d : 0.16	b : 0.13	h : 0.13	2 : 0.07	3 : 0.07	e : 0.05	g : 0.05	] : 0.03	a : 0.01	f : 0.01	= : 0.01	4 : 0.01	
b : 0.13	h : 0.13	d : 0.13	2 : 0.11	] : 0.11	c : 0.11	3 : 0.07	e : 0.05	g : 0.03	f : 0.03	i : 0.01	= : 0.01	: : 0.01	
h : 0.13	d : 0.13	] : 0.11	c : 0.11	g : 0.09	f : 0.09	2 : 0.07	3 : 0.05	e : 0.05	b : 0.05	4 : 0.01	i : 0.01	= : 0.01	a : 0.01	
h : 0.13	g : 0.11	c : 0.11	d : 0.11	e : 0.11	f : 0.09	3 : 0.05	a : 0.05	b : 0.05	] : 0.05	4 : 0.01	i : 0.01	2 : 0.01	: : 0.01	l : 0.01	
e : 0.16	h : 0.13	g : 0.13	c : 0.13	d : 0.11	f : 0.11	3 : 0.05	b : 0.03	4 : 0.01	] : 0.01	i : 0.01	2 : 0.01	! : 0.01	l : 0.01	
e : 0.18	d : 0.13	g : 0.13	h : 0.11	c : 0.09	f : 0.09	] : 0.05	3 : 0.05	4 : 0.01	a : 0.01	i : 0.01	b : 0.01	2 : 0.01	! : 0.01	l : 0.01	
e : 0.16	g : 0.15	h : 0.13	f : 0.13	c : 0.09	d : 0.07	b : 0.05	2 : 0.03	a : 0.03	3 : 0.03	i : 0.01	4 : 0.01	] : 0.01	: : 0.01	
e : 0.15	g : 0.13	f : 0.11	b : 0.09	c : 0.07	d : 0.07	2 : 0.07	] : 0.07	h : 0.07	: : 0.07	i : 0.01	4 : 0.01	3 : 0.01	

#score	654.1527422937866
#seq	53
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_UTR_m2_run1.txt

#BEAR
e!!cccooooooccc77	chr2:85823948-85824154(+)$1	206	145	162	10.1664
###cccooooooccchh	chr16:56396670-56396929(-)$1	259	215	232	10.5159
++ddddoooooodddd>	chr11:8707124-8707332(+)$1	208	61	78	11.3203
ccddddoooooodddd3	chr10:120927853-120928141(-)$1	288	81	98	12.5146
b[ddddoooooodddd]	chr11:2154259-2154461(-)$1	202	122	139	12.6622
:eeeeeooooooeeeee	chr12:120636296-120636525(-)$1	229	23	40	10.9449
cc[cccooooooccc]c	chr19:42373131-42373345(+)$1	214	30	47	10.8550
b[ddddoooooodddd]	chr11:2154288-2154497(-)$1	209	158	175	12.6622
c[ddddooooooddddc	chr2:216226651-216226868(-)$1	217	93	110	12.4089
b[ddddoooooodddd]	chr11:2154180-2154382(-)$1	202	43	60	12.6622
!eeeeeooooooeeeee	chr20:54942678-54942909(+)$1	231	52	69	11.5973
!!a[bboooooobb]a2	chr11:61732104-61732315(-)$1	211	78	95	9.4851
:eeeeeooooooeeeee	chr11:2152549-2152754(-)$1	205	38	55	10.9449
#ccc[aooooooa]ccc	chr2:47130986-47131286(-)$1	300	36	53	10.4659
:eeeeeooooooeeeee	chr11:2154700-2154904(-)$1	204	183	200	10.9449
!eeeeeooooooeeeee	chr11:2154678-2154880(-)$1	202	159	176	11.5973
d[ddddoooooodddd]	chr11:2154756-2154970(-)$1	214	119	136	12.6921
:eeeeeooooooeeeee	chr11:2152546-2152749(-)$1	203	33	50	10.9449
:eeeeeooooooeeeee	chr20:62324517-62324871(+)$1	354	206	223	10.9449
eeee[aooooooa]eee	chr10:102123981-102124193(+)$1	212	138	155	11.0269
::ddddoooooodddd:	chr12:120638479-120638692(-)$1	213	192	209	10.1343
!eeeeeooooooeeeee	chr11:2154648-2154853(-)$1	205	132	149	11.5973
d[ddddoooooodddd]	chr11:2154790-2154995(-)$1	205	144	161	12.6921
dddd[aooooooa]ddd	chr8:99054866-99055086(-)$1	220	2	19	11.1277
eeecccooooooccc22	chr11:2153504-2153707(-)$1	203	90	107	11.3847
dddcccooooooccc22	chr11:124789818-124790127(-)$1	309	118	135	11.2888
b[ddddooooooddddb	chr18:43664369-43664618(-)$1	249	123	140	12.0743
[eeeeeooooooeeeee	chr15:39887708-39888027(+)$1	319	117	134	11.4830
b[ddddooooooddddb	chr19:42373101-42373305(+)$1	204	13	30	12.0743
eeecccooooooccc22	chr11:2153500-2153704(-)$1	204	87	104	11.3847
a[ddddaooooooa]dd	chr11:2152036-2152240(-)$1	204	5	22	10.4164
!a[cccooooooccca2	chr3:197680854-197681070(+)$1	216	21	38	11.2626
::ddddoooooodddd:	chr15:65868781-65869037(+)$1	256	228	245	10.1343
!!ddddoooooodddd4	chr12:123998362-123998631(-)$1	269	60	77	12.7665
!!ddddoooooodddd2	chr13:45911304-45911523(-)$1	219	180	197	12.7986
eeecccooooooccc22	chr11:2153491-2153694(-)$1	203	77	94	11.3847
dddcccooooooccc33	chr17:39847573-39847848(+)$1	275	218	235	11.4913
eeecccooooooccc22	chr11:2153530-2153733(-)$1	203	116	133	11.3847
ddddddoooooodddd2	chr12:123997898-123998223(-)$1	325	66	83	12.3599
:eeeeeooooooeeeee	chr11:2152572-2152776(-)$1	204	60	77	10.9449
ff[cccoooooocccff	chr11:2154725-2154930(-)$1	205	25	42	10.2865
d[ddddoooooodddd]	chr11:2154752-2154956(-)$1	204	105	122	12.6921
d[ddddoooooodddd]	chr11:2154657-2154861(-)$1	204	10	27	12.6921
eeee[aooooooa]eee	chr1:92262909-92263128(-)$1	219	82	99	11.0269
cc[cccooooooccc]c	chr1:153947048-153947335(-)$1	287	34	51	10.8550
$eeeeeooooooeeeee	chr1:92148926-92149198(-)$1	272	144	161	11.3896
::ddddoooooodddd:	chr5:180668409-180668636(-)$1	227	96	113	10.1343
feeeeeooooooeeeee	chr6:75964934-75965170(-)$1	236	95	112	11.2499
eeecccooooooccc22	chr11:2153483-2153686(-)$1	203	69	86	11.3847
ddddddoooooodddd]	chr3:49135416-49135650(-)$1	234	184	201	12.3883
:eeeeeooooooeeeee	chr8:117670972-117671279(-)$1	307	19	36	10.9449
ccccccooooooccc]c	chr17:76987846-76988155(-)$1	309	18	35	10.8399
a[ddddoooooodddd]	chr11:2151871-2152109(-)$1	238	122	139	12.8338
eeddddoooooodddd:	chr11:2154314-2154525(-)$1	211	186	203	11.6101
dddd[aooooooa]ddd	chr1:92149310-92149514(-)$1	204	94	111	11.1277
c[ddddoooooodddd5	chr5:10680345-10680680(-)$1	335	212	229	11.9866

#otherMatches

#Seq PSSM
CCCAGUACUCAAGCUUC	chr2:85823948-85824154(+)$1	206	145	162	10.1664
GCCGCUGUAUAAAGCAU	chr16:56396670-56396929(-)$1	259	215	232	10.5159
ACUACAGUGUAUUGUAA	chr11:8707124-8707332(+)$1	208	61	78	11.3203
CUUUUGUAUUUUCAGAU	chr10:120927853-120928141(-)$1	288	81	98	12.5146
GUGCUCGCCAAGGAGCU	chr11:2154259-2154461(-)$1	202	122	139	12.6622
CCAGCGAAGCCACGCUG	chr12:120636296-120636525(-)$1	229	23	40	10.9449
CUAUGGGGGACGUCAGA	chr19:42373131-42373345(+)$1	214	30	47	10.8550
GUGCUCGCCAAGGAGCU	chr11:2154288-2154497(-)$1	209	158	175	12.6622
CCUGGGGGUGAACCCAG	chr2:216226651-216226868(-)$1	217	93	110	12.4089
GUGCUCGCCAAGGAGCU	chr11:2154180-2154382(-)$1	202	43	60	12.6622
CUGAGGCUUCGUCCUUA	chr20:54942678-54942909(+)$1	231	52	69	11.5973
GACAAGCACACCCUGGG	chr11:61732104-61732315(-)$1	211	78	95	9.4851
cgcagcacacacguugc	chr11:2152549-2152754(-)$1	205	38	55	10.9449
cugcaggcuuaacagca	chr2:47130986-47131286(-)$1	300	36	53	10.4659
CUCUCUAGAGACAGAGA	chr11:2154700-2154904(-)$1	204	183	200	10.9449
CUCUCUAGAGACAGAGA	chr11:2154678-2154880(-)$1	202	159	176	11.5973
GAGGAGUGCUGUUUCCG	chr11:2154756-2154970(-)$1	214	119	136	12.6921
cgcagcacacacguugc	chr11:2152546-2152749(-)$1	203	33	50	10.9449
CGGGCCCUGCUUGGCCC	chr20:62324517-62324871(+)$1	354	206	223	10.9449
ccuucuguuaaaauggg	chr10:102123981-102124193(+)$1	212	138	155	11.0269
UGUUGCCCCAGCGCAAA	chr12:120638479-120638692(-)$1	213	192	209	10.1343
CUCUCUAGAGACAGAGA	chr11:2154648-2154853(-)$1	205	132	149	11.5973
GAGGAGUGCUGUUUCCG	chr11:2154790-2154995(-)$1	205	144	161	12.6921
ACUAGUAAAAGAAGUAG	chr8:99054866-99055086(-)$1	220	2	19	11.1277
UGGGCACGUCGCUGCUA	chr11:2153504-2153707(-)$1	203	90	107	11.3847
GGGGGAACAUGAUCCAA	chr11:124789818-124790127(-)$1	309	118	135	11.2888
CACCAAGCCUUGUUGGG	chr18:43664369-43664618(-)$1	249	123	140	12.0743
AAAGCAUCUACUUGCUU	chr15:39887708-39888027(+)$1	319	117	134	11.4830
CACCUGUACCUCCGGGG	chr19:42373101-42373305(+)$1	204	13	30	12.0743
UGGGCACGUCGCUGCUA	chr11:2153500-2153704(-)$1	204	87	104	11.3847
UGGCCACAUUGGAGAUG	chr11:2152036-2152240(-)$1	204	5	22	10.4164
ACACAGUCACUCCUGGC	chr3:197680854-197681070(+)$1	216	21	38	11.2626
CAGAGAUUUUUUUUUCA	chr15:65868781-65869037(+)$1	256	228	245	10.1343
cugugaacuuuguCACU	chr12:123998362-123998631(-)$1	269	60	77	12.7665
GGUUGUCUAAAAAUAAA	chr13:45911304-45911523(-)$1	219	180	197	12.7986
UGGGCACGUCGCUGCUA	chr11:2153491-2153694(-)$1	203	77	94	11.3847
CCAUGUGAAGUAACAAA	chr17:39847573-39847848(+)$1	275	218	235	11.4913
UGGGCACGUCGCUGCUA	chr11:2153530-2153733(-)$1	203	116	133	11.3847
ACUUCACAUCGAUGAAG	chr12:123997898-123998223(-)$1	325	66	83	12.3599
cgcagcacacacguugc	chr11:2152572-2152776(-)$1	204	60	77	10.9449
GGACUUCCAGGCAGGCC	chr11:2154725-2154930(-)$1	205	25	42	10.2865
GAGGAGUGCUGUUUCCG	chr11:2154752-2154956(-)$1	204	105	122	12.6921
GAGGAGUGCUGUUUCCG	chr11:2154657-2154861(-)$1	204	10	27	12.6921
UUGUGAUUCCCUUGGCA	chr1:92262909-92263128(-)$1	219	82	99	11.0269
GCUUUGAUGGAACAACG	chr1:153947048-153947335(-)$1	287	34	51	10.8550
UGGUGGUCUUCUCCACC	chr1:92148926-92149198(-)$1	272	144	161	11.3896
AACCAUCAAGCUAUGGA	chr5:180668409-180668636(-)$1	227	96	113	10.1343
UUGAAGCUUAUACUUUA	chr6:75964934-75965170(-)$1	236	95	112	11.2499
UGGGCACGUCGCUGCUA	chr11:2153483-2153686(-)$1	203	69	86	11.3847
CUUGGAUAUUUCUCCGU	chr3:49135416-49135650(-)$1	234	184	201	12.3883
AAAAAGUUUUUUCUUUU	chr8:117670972-117671279(-)$1	307	19	36	10.9449
CAAGUCUGUUCUGACUU	chr17:76987846-76988155(-)$1	309	18	35	10.8399
AGUUCUGGGGUAGGAAG	chr11:2151871-2152109(-)$1	238	122	139	12.8338
GUGCUCGCCAAGGAGCU	chr11:2154314-2154525(-)$1	211	186	203	11.6101
CUGCAGGGGAGACAGCA	chr1:92149310-92149514(-)$1	204	94	111	11.1277
UCAGCCCAGACAGGCUC	chr5:10680345-10680680(-)$1	335	212	229	11.9866

#DB
(..(((......)))..	chr2:85823948-85824154(+)$1	1	145	162	10.1664
...(((......)))))	chr16:56396670-56396929(-)$1	1	215	232	10.5159
..((((......)))).	chr11:8707124-8707332(+)$1	1	61	78	11.3203
((((((......)))).	chr10:120927853-120928141(-)$1	1	81	98	12.5146
(.((((......)))).	chr11:2154259-2154461(-)$1	1	122	139	12.6622
.(((((......)))))	chr12:120636296-120636525(-)$1	1	23	40	10.9449
((.(((......))).)	chr19:42373131-42373345(+)$1	1	30	47	10.8550
(.((((......)))).	chr11:2154288-2154497(-)$1	1	158	175	12.6622
(.((((......)))))	chr2:216226651-216226868(-)$1	1	93	110	12.4089
(.((((......)))).	chr11:2154180-2154382(-)$1	1	43	60	12.6622
.(((((......)))))	chr20:54942678-54942909(+)$1	1	52	69	11.5973
..(.((......)).).	chr11:61732104-61732315(-)$1	1	78	95	9.4851
.(((((......)))))	chr11:2152549-2152754(-)$1	1	38	55	10.9449
.(((.(......).)))	chr2:47130986-47131286(-)$1	1	36	53	10.4659
.(((((......)))))	chr11:2154700-2154904(-)$1	1	183	200	10.9449
.(((((......)))))	chr11:2154678-2154880(-)$1	1	159	176	11.5973
(.((((......)))).	chr11:2154756-2154970(-)$1	1	119	136	12.6921
.(((((......)))))	chr11:2152546-2152749(-)$1	1	33	50	10.9449
.(((((......)))))	chr20:62324517-62324871(+)$1	1	206	223	10.9449
((((.(......).)))	chr10:102123981-102124193(+)$1	1	138	155	11.0269
..((((......)))).	chr12:120638479-120638692(-)$1	1	192	209	10.1343
.(((((......)))))	chr11:2154648-2154853(-)$1	1	132	149	11.5973
(.((((......)))).	chr11:2154790-2154995(-)$1	1	144	161	12.6921
((((.(......).)))	chr8:99054866-99055086(-)$1	1	2	19	11.1277
((((((......)))..	chr11:2153504-2153707(-)$1	1	90	107	11.3847
((((((......)))..	chr11:124789818-124790127(-)$1	1	118	135	11.2888
(.((((......)))))	chr18:43664369-43664618(-)$1	1	123	140	12.0743
.(((((......)))))	chr15:39887708-39888027(+)$1	1	117	134	11.4830
(.((((......)))))	chr19:42373101-42373305(+)$1	1	13	30	12.0743
((((((......)))..	chr11:2153500-2153704(-)$1	1	87	104	11.3847
(.(((((......).))	chr11:2152036-2152240(-)$1	1	5	22	10.4164
.(.(((......)))).	chr3:197680854-197681070(+)$1	1	21	38	11.2626
..((((......)))).	chr15:65868781-65869037(+)$1	1	228	245	10.1343
..((((......)))).	chr12:123998362-123998631(-)$1	1	60	77	12.7665
..((((......)))).	chr13:45911304-45911523(-)$1	1	180	197	12.7986
((((((......)))..	chr11:2153491-2153694(-)$1	1	77	94	11.3847
((((((......)))..	chr17:39847573-39847848(+)$1	1	218	235	11.4913
((((((......)))..	chr11:2153530-2153733(-)$1	1	116	133	11.3847
((((((......)))).	chr12:123997898-123998223(-)$1	1	66	83	12.3599
.(((((......)))))	chr11:2152572-2152776(-)$1	1	60	77	10.9449
((.(((......)))))	chr11:2154725-2154930(-)$1	1	25	42	10.2865
(.((((......)))).	chr11:2154752-2154956(-)$1	1	105	122	12.6921
(.((((......)))).	chr11:2154657-2154861(-)$1	1	10	27	12.6921
((((.(......).)))	chr1:92262909-92263128(-)$1	1	82	99	11.0269
((.(((......))).)	chr1:153947048-153947335(-)$1	1	34	51	10.8550
.(((((......)))))	chr1:92148926-92149198(-)$1	1	144	161	11.3896
..((((......)))).	chr5:180668409-180668636(-)$1	1	96	113	10.1343
((((((......)))))	chr6:75964934-75965170(-)$1	1	95	112	11.2499
((((((......)))..	chr11:2153483-2153686(-)$1	1	69	86	11.3847
((((((......)))).	chr3:49135416-49135650(-)$1	1	184	201	12.3883
.(((((......)))))	chr8:117670972-117671279(-)$1	1	19	36	10.9449
((((((......))).)	chr17:76987846-76988155(-)$1	1	18	35	10.8399
(.((((......)))).	chr11:2151871-2152109(-)$1	1	122	139	12.8338
))((((......)))).	chr11:2154314-2154525(-)$1	1	186	203	11.6101
((((.(......).)))	chr1:92149310-92149514(-)$1	1	94	111	11.1277
(.((((......)))).	chr5:10680345-10680680(-)$1	1	212	229	11.9866

#PSSM
: : 0.17	d : 0.17	e : 0.16	! : 0.12	c : 0.10	b : 0.08	# : 0.03	a : 0.03	f : 0.03	+ : 0.01	[ : 0.01	$ : 0.01	
e : 0.37	[ : 0.23	d : 0.10	c : 0.08	! : 0.07	: : 0.05	# : 0.01	+ : 0.01	a : 0.01	f : 0.01	
d : 0.48	e : 0.35	[ : 0.07	c : 0.03	! : 0.01	# : 0.01	a : 0.01	
d : 0.44	c : 0.26	e : 0.26	[ : 0.01	
d : 0.41	c : 0.24	e : 0.23	[ : 0.08	b : 0.01	
d : 0.41	c : 0.24	e : 0.23	a : 0.08	b : 0.01	
o : 0.98	a : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.39	c : 0.24	e : 0.23	a : 0.08	b : 0.01	o : 0.01	
d : 0.39	c : 0.24	e : 0.23	] : 0.08	b : 0.01	a : 0.01	
d : 0.42	c : 0.26	e : 0.26	] : 0.03	
d : 0.44	e : 0.26	2 : 0.10	] : 0.05	a : 0.03	7 : 0.01	h : 0.01	c : 0.01	3 : 0.01	f : 0.01	
e : 0.26	2 : 0.17	] : 0.16	c : 0.08	: : 0.07	d : 0.05	3 : 0.03	b : 0.03	7 : 0.01	h : 0.01	> : 0.01	4 : 0.01	f : 0.01	5 : 0.01	

#score	640.986575601554
#seq	56
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_UTR_m1_run2.txt

#BEAR
dffffffauuuuuuuuuuuua]ffffff>	chr19:1815461-1815735(-)$1	274	56	85	24.0067
ggg^^^^^^^^^^^^^^^^^^^^gggggg	chr19:59067183-59067393(-)$1	210	88	117	16.2241
%%%ddddwwwwwwwwwwwwwwdddd6666	chr9:131770613-131770927(-)$1	314	197	226	20.2392
ee"""cccuuuuuuuuuuuuccc333eee	chr19:54972242-54972494(+)$1	252	164	193	24.8032
'''eeeeeuuuuuuuuuuuueeeee0000	chr16:315218-315517(+)$1	299	127	156	21.2546
::ffffffuuuuuuuuuuuuffffff:dd	chr11:63678106-63678358(+)$1	252	36	65	21.0022
hhhhhhhwwwwwwwwwwwwwwhhhhhhhh	chr6:116598094-116598352(-)$1	258	186	215	20.7926
ddddyyyyyyyyyyyyyyyydddd::ddd	chr17:7481852-7482112(+)$1	260	183	212	18.7293
ggggggyyyyyyyyyyyyyyyyggggggg	chr1:185266851-185267114(-)$1	263	137	166	22.8794
cc[fffffftttttttttttffffff]cc	chr1:44443549-44443780(+)$1	231	20	49	22.1561
bb"""bbvvvvvvvvvvvvvbbbb]eeee	chr12:6857220-6857458(-)$1	238	159	188	22.2273
"ffffffwwwwwwwwwwwwwwffffff]b	chrX:134166793-134167081(+)$1	288	89	118	23.2012
dccc!!bbuuuuuuuuuuuubb22ccc]d	chr14:105936649-105936933(+)$1	284	50	79	23.1082
iiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr1:40887770-40888049(+)$1	279	164	193	24.4532
###eeeeeuuuuuuuuuuuueeeee22dd	chr7:98930859-98931141(+)$1	282	180	209	24.1418
ccc!!ccctttttttttttccc22ccc]d	chr5:1461574-1461875(-)$1	301	198	227	22.5616
[ccc[awwwwwwwwwwwwwwa]ccc]ccc	chr19:55918959-55919230(-)$1	271	39	68	23.6407
iiiiiiiwwwwwwwwwwwwwwiiiiiiii	chr17:42112741-42112992(-)$1	251	185	214	23.9961
c[ffffffvvvvvvvvvvvvvffffff]c	chr11:69063936-69064225(+)$1	289	186	215	23.6519
gggddddwwwwwwwwwwwwwwdddd]ggg	chr6:8079813-8080071(-)$1	258	160	189	23.1563
::eeeeevvvvvvvvvvvvveeeeeccc!	chr19:18545801-18546017(-)$1	216	121	150	21.4896
[ffffffwwwwwwwwwwwwwwffffffcc	chr3:9743714-9743999(+)$1	285	133	162	23.2942
ffffffyyyyyyyyyyyyyyyyffffff:	chr2:27249705-27249965(+)$1	260	226	255	21.0739
!!eeeeeyyyyyyyyyyyyyyyyeeeee2	chr1:1228426-1228673(-)$1	247	123	152	22.0201
iiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr17:45300774-45301003(+)$1	229	58	87	24.4532
d[ddddccctttttttttttccc]ddddd	chr15:74701692-74701988(-)$1	296	85	114	21.9764
ddd[ddddvvvvvvvvvvvvvdddd]ddd	chr22:19711956-19712248(+)$1	292	26	55	22.9421
!ffffffxxxxxxxxxxxxxxxffffffb	chr11:64534271-64534564(-)$1	293	157	186	19.1373
fffeeeeeuuuuuuuuuuuueeeee]fff	chrX:153670956-153671219(+)$1	263	231	260	23.2605
####dddduuuuuuuuuuuudddd22hhh	chr10:70744587-70744850(+)$1	263	164	193	23.5479
e[ffffffuuuuuuuuuuuuffffff22e	chr1:150237745-150238024(-)$1	279	190	219	23.4825
ddddd[bbtttttttttttbb]dddd]dd	chr1:47843835-47844062(+)$1	227	169	198	20.7718
hhhhhyyyyyyyyyyyyyyyyhhhhhhhh	chr19:34890875-34891141(+)$1	266	46	75	20.0636
""fffffftttttttttttffffff4444	chr17:79976731-79976997(-)$1	266	210	239	22.4363
=========ttttttttttt=========	chr1:150547105-150547363(-)$1	258	37	66	23.0045
##eeeeexxxxxxxxxxxxxxxeeeeeee	chr14:69254631-69254937(-)$1	306	199	228	19.3488
+a!!dddduuuuuuuuuuuudddd22a>>	chr6:31498047-31498308(-)$1	261	40	69	23.2091
iiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr14:100800842-100801065(-)$1	223	153	182	24.4532
####cccwwwwwwwwwwwwwwccc333ee	chr9:91931326-91931578(+)$1	252	218	247	24.7394
ddd!!ddddtttttttttttdddd]dddd	chr17:79668584-79668889(+)$1	305	186	215	21.4065
gggggggwwwwwwwwwwwwwwggggggg:	chr14:21484915-21485227(-)$1	312	262	291	23.1367
dd[bb[avvvvvvvvvvvvva]bb]dddd	chr1:19948492-19948742(+)$1	250	159	188	22.7716
d[eeeeewwwwwwwwwwwwwweeeee333	chr16:29822004-29822266(+)$1	262	203	232	23.5235
%%bb[cccuuuuuuuuuuuucccbb6666	chr1:154929931-154930159(-)$1	228	69	98	21.4297
cc!!bb[bbtttttttttttbbbb22ccc	chr2:85875785-85876067(+)$1	282	182	211	21.2803
!!a!!cccuuuuuuuuuuuuccc22a22c	chr11:63765277-63765517(+)$1	240	54	83	24.7772
c"""eeeeettttttttttteeeee4444	chr13:27830295-27830536(+)$1	241	91	120	22.7833
!gggggggvvvvvvvvvvvvvggggggg2	chr3:186507620-186507903(-)$1	283	16	45	24.0999
$$$$cccvvvvvvvvvvvvvccc333ddd	chr11:63765649-63765929(+)$1	280	109	138	24.1698
dd!!ddddvvvvvvvvvvvvvdddd333d	chr19:12841582-12841828(-)$1	246	91	120	23.7944
a[fffffftttttttttttffffff]a::	chr19:47774860-47775178(+)$1	318	273	302	20.4414
:gggggggvvvvvvvvvvvvvggggggg:	chr22:35820125-35820399(+)$1	274	8	37	22.4637
^^^^^^^^^^^^^^^^^^^^^========	chr16:20745051-20745316(-)$1	265	85	114	16.5185
ccc[cccauuuuuuuuuuuua]ccc]ccc	chrX:153906239-153906480(-)$1	241	101	130	25.1736
cc"""cccuuuuuuuuuuuuccccccddd	chr11:252682-252937(+)$1	255	152	181	24.7160
ee"""cccuuuuuuuuuuuuccc333eee	chr19:54972226-54972442(+)$1	216	180	209	24.8032

#otherMatches

#Seq PSSM
AGACAGUCuuuuuuuauuuuguauuguua	chr19:1815461-1815735(-)$1	274	56	85	24.0067
UAUUUUUUUUUUUUUAACACCAUGUGAUU	chr19:59067183-59067393(-)$1	210	88	117	16.2241
CCCGAGCACCCCACCCUCCAGGCUCCACU	chr9:131770613-131770927(-)$1	314	197	226	20.2392
GUUUUCUCUCUCUCUCUUUCGAGCUUGCA	chr19:54972242-54972494(+)$1	252	164	193	24.8032
GCAGCACCCCAUCCUUACCCGGUGCCCUC	chr16:315218-315517(+)$1	299	127	156	21.2546
uauGAUGACUCCACCCCUCUUCAUCACCC	chr11:63678106-63678358(+)$1	252	36	65	21.0022
GUUUCUGUUAAACUAUAUUCCUAGAAACA	chr6:116598094-116598352(-)$1	258	186	215	20.7926
ACUAAUCCAUUUCCCUAACCUAGUAACCU	chr17:7481852-7482112(+)$1	260	183	212	18.7293
AGGUCUGUUUUGUGUACUUUUAAGACUUU	chr1:185266851-185267114(-)$1	263	137	166	22.8794
UGCUAGAUGUCAUCUUCUAUCAUUUGUCA	chr1:44443549-44443780(+)$1	231	20	49	22.1561
AGACUGGUUCCUAACUCUCUCCCUCCUCC	chr12:6857220-6857458(-)$1	238	159	188	22.2273
CCUGCGCUCCUGUUCCCUCCCGCGUAGUG	chrX:134166793-134167081(+)$1	288	89	118	23.2012
GAGGAGAGGAAGAAGCGCGGCUAACUUAU	chr14:105936649-105936933(+)$1	284	50	79	23.1082
ACAUGAAGACCUCUCUGUUGCUUUAUGUU	chr1:40887770-40888049(+)$1	279	164	193	24.4532
CGUAAGUAUUUUAUUAACUUUGCUUUUGU	chr7:98930859-98931141(+)$1	282	180	209	24.1418
CCAGACCCGUGGGCAGGUGGGGCAUGGGC	chr5:1461574-1461875(-)$1	301	198	227	22.5616
GGCGGUUAUAAAGAGGCAGUGGUGCGCGC	chr19:55918959-55919230(-)$1	271	39	68	23.6407
GAGCCAGUGUGCAGAUAGAAUUUGGCUUU	chr17:42112741-42112992(-)$1	251	185	214	23.9961
gugcugggaaAAUCAUGAUAACCCAGCUC	chr11:69063936-69064225(+)$1	289	186	215	23.6519
AAGUUGAGAUCCAGUUAUAAAUUAACCUU	chr6:8079813-8080071(-)$1	258	160	189	23.1563
AUGCUCCUGGAACACAAAAUGGAGCGCCC	chr19:18545801-18546017(-)$1	216	121	150	21.4896
UGGUGACCACCACCCCUUCUUGUCACUGU	chr3:9743714-9743999(+)$1	285	133	162	23.2942
GGUUCACCACACAAACUCUGCCUGGACCC	chr2:27249705-27249965(+)$1	260	226	255	21.0739
CUGGCUCCCUCCUGCACACCCCAGAGCCU	chr1:1228426-1228673(-)$1	247	123	152	22.0201
UAGGAGGGUGAAAUGCCCUUUCCUCCUAG	chr17:45300774-45301003(+)$1	229	58	87	24.4532
GCUCCUAGCCUCCCACCUUCGCUCAGGAC	chr15:74701692-74701988(-)$1	296	85	114	21.9764
CCUGAGGAGAGAACCGGUGCGUCCUGAGG	chr22:19711956-19712248(+)$1	292	26	55	22.9421
GUAUGGCUUCCAGUACCCCCUUGCCAUGG	chr11:64534271-64534564(-)$1	293	157	186	19.1373
UUUCUUGGCCCUUCCUUAUCCUAGGAAAA	chrX:153670956-153671219(+)$1	263	231	260	23.2605
AAAUGUUUUUACUAUAAAAUGAGCUAAUG	chr10:70744587-70744850(+)$1	263	164	193	23.5479
GUGAUUUUGACUAAUAAAAAAGAAUUUGU	chr1:150237745-150238024(-)$1	279	190	219	23.4825
CAGAGGUGGUUUAAUCAAACAGCUCUAGU	chr1:47843835-47844062(+)$1	227	169	198	20.7718
GCGAGGCCAGAGUCCAAUAAACUCGUGCU	chr19:34890875-34891141(+)$1	266	46	75	20.0636
GGUGCUGGGAAAGGCCUGGCCAGCAGGUA	chr17:79976731-79976997(-)$1	266	210	239	22.4363
AAAUCCUCCAAAAGGGAAAGGGAGGAUUU	chr1:150547105-150547363(-)$1	258	37	66	23.0045
UAGGACUGAGAAUGUAUGUAAAAGUUCUG	chr14:69254631-69254937(-)$1	306	199	228	19.3488
UUUUCAUGCCUUAUUCUGACCAUGCUACG	chr6:31498047-31498308(-)$1	261	40	69	23.2091
CCAUGGGCCACCCUGUUCUUGUCCAUGGA	chr14:100800842-100801065(-)$1	223	153	182	24.4532
UUUUCUCUUAAGUGCCUGUUUGAGUUUAC	chr9:91931326-91931578(+)$1	252	218	247	24.7394
AGGGGGGGCCUUCACCCCAAGCCCACCUC	chr17:79668584-79668889(+)$1	305	186	215	21.4065
CUUCUGCUAUAACAAUAAACUGUAGAGGA	chr14:21484915-21485227(-)$1	312	262	291	23.1367
CUCUGUCUUUUCAACAUAAUGUCAUAGUG	chr1:19948492-19948742(+)$1	250	159	188	22.7716
CAGAGGCAGAGAAGAGAUGGAGUCUUAGG	chr16:29822004-29822266(+)$1	262	203	232	23.5235
UUUGUCUUUUUUUAUUUUUUAAGCACUGC	chr1:154929931-154930159(-)$1	228	69	98	21.4297
CUGAUGAUGGUAAAUAAGAACACAGAAGC	chr2:85875785-85876067(+)$1	282	182	211	21.2803
UCGUUGGGUUCUGCUUCCUUCCCUUCUUA	chr11:63765277-63765517(+)$1	240	54	83	24.7772
UAGCUUCCUGAAACGUGUGAAGGAAAAUG	chr13:27830295-27830536(+)$1	241	91	120	22.7833
UGAAGGAUGCUAAUUUCUUAAAUUUUUCU	chr3:186507620-186507903(-)$1	283	16	45	24.0999
CUCUGCAUUGCCUGCCUUUUUGCCUUCAC	chr11:63765649-63765929(+)$1	280	109	138	24.1698
GCGAUGUACAUAACUAUUUAAUGCAGCGG	chr19:12841582-12841828(-)$1	246	91	120	23.7944
GUCUCUGGAAUGUCCACUCCCAGAGCCUG	chr19:47774860-47775178(+)$1	318	273	302	20.4414
UGUGCUCCCACAGAAAUACCCGGAGCACG	chr22:35820125-35820399(+)$1	274	8	37	22.4637
UUUAAAAAAUUACGUCAGUUAAAAAAAUA	chr16:20745051-20745316(-)$1	265	85	114	16.5185
uuGUCCACUAAAAACACACUGAUGGUCAA	chrX:153906239-153906480(-)$1	241	101	130	25.1736
GUGAUACGGGAGAGAAAGAACGUGCCAGG	chr11:252682-252937(+)$1	255	152	181	24.7160
GUUUUCUCUCUCUCUCUUUCGAGCUUGCA	chr19:54972226-54972442(+)$1	216	180	209	24.8032

#DB
((((((((............).)))))).	chr19:1815461-1815735(-)$1	1	56	85	24.0067
(((....................))))))	chr19:59067183-59067393(-)$1	1	88	117	16.2241
...((((..............))))....	chr9:131770613-131770927(-)$1	1	197	226	20.2392
((...(((............)))...)))	chr19:54972242-54972494(+)$1	1	164	193	24.8032
...(((((............)))))....	chr16:315218-315517(+)$1	1	127	156	21.2546
..((((((............)))))).((	chr11:63678106-63678358(+)$1	1	36	65	21.0022
(((((((..............))))))))	chr6:116598094-116598352(-)$1	1	186	215	20.7926
((((................))))..(((	chr17:7481852-7482112(+)$1	1	183	212	18.7293
((((((................)))))))	chr1:185266851-185267114(-)$1	1	137	166	22.8794
((.((((((...........)))))).))	chr1:44443549-44443780(+)$1	1	20	49	22.1561
((...((.............)))).))))	chr12:6857220-6857458(-)$1	1	159	188	22.2273
.((((((..............)))))).)	chrX:134166793-134167081(+)$1	1	89	118	23.2012
((((..((............))..))).)	chr14:105936649-105936933(+)$1	1	50	79	23.1082
((((((((............)))))))))	chr1:40887770-40888049(+)$1	1	164	193	24.4532
...(((((............)))))..))	chr7:98930859-98931141(+)$1	1	180	209	24.1418
(((..(((...........)))..))).)	chr5:1461574-1461875(-)$1	1	198	227	22.5616
.(((.(..............).))).)))	chr19:55918959-55919230(-)$1	1	39	68	23.6407
(((((((..............))))))))	chr17:42112741-42112992(-)$1	1	185	214	23.9961
(.((((((.............)))))).)	chr11:69063936-69064225(+)$1	1	186	215	23.6519
(((((((..............)))).)))	chr6:8079813-8080071(-)$1	1	160	189	23.1563
..(((((.............)))))(((.	chr19:18545801-18546017(-)$1	1	121	150	21.4896
.((((((..............))))))))	chr3:9743714-9743999(+)$1	1	133	162	23.2942
((((((................)))))).	chr2:27249705-27249965(+)$1	1	226	255	21.0739
..(((((................))))).	chr1:1228426-1228673(-)$1	1	123	152	22.0201
((((((((............)))))))))	chr17:45300774-45301003(+)$1	1	58	87	24.4532
(.(((((((...........))).)))))	chr15:74701692-74701988(-)$1	1	85	114	21.9764
(((.((((.............)))).)))	chr22:19711956-19712248(+)$1	1	26	55	22.9421
.((((((...............)))))))	chr11:64534271-64534564(-)$1	1	157	186	19.1373
((((((((............))))).)))	chrX:153670956-153671219(+)$1	1	231	260	23.2605
....((((............))))..)))	chr10:70744587-70744850(+)$1	1	164	193	23.5479
(.((((((............))))))..)	chr1:150237745-150238024(-)$1	1	190	219	23.4825
(((((.((...........)).)))).))	chr1:47843835-47844062(+)$1	1	169	198	20.7718
(((((................))))))))	chr19:34890875-34891141(+)$1	1	46	75	20.0636
..((((((...........))))))....	chr17:79976731-79976997(-)$1	1	210	239	22.4363
(((((((((...........)))))))))	chr1:150547105-150547363(-)$1	1	37	66	23.0045
..(((((...............)))))))	chr14:69254631-69254937(-)$1	1	199	228	19.3488
.(..((((............))))..)..	chr6:31498047-31498308(-)$1	1	40	69	23.2091
((((((((............)))))))))	chr14:100800842-100801065(-)$1	1	153	182	24.4532
....(((..............)))...))	chr9:91931326-91931578(+)$1	1	218	247	24.7394
(((..((((...........)))).))))	chr17:79668584-79668889(+)$1	1	186	215	21.4065
(((((((..............))))))).	chr14:21484915-21485227(-)$1	1	262	291	23.1367
((.((.(.............).)).))))	chr1:19948492-19948742(+)$1	1	159	188	22.7716
(.(((((..............)))))...	chr16:29822004-29822266(+)$1	1	203	232	23.5235
..((.(((............)))))....	chr1:154929931-154930159(-)$1	1	69	98	21.4297
((..((.((...........))))..)))	chr2:85875785-85876067(+)$1	1	182	211	21.2803
..(..(((............)))..)..)	chr11:63765277-63765517(+)$1	1	54	83	24.7772
(...(((((...........)))))....	chr13:27830295-27830536(+)$1	1	91	120	22.7833
.(((((((.............))))))).	chr3:186507620-186507903(-)$1	1	16	45	24.0999
....(((.............)))...)))	chr11:63765649-63765929(+)$1	1	109	138	24.1698
((..((((.............))))...)	chr19:12841582-12841828(-)$1	1	91	120	23.7944
(.((((((...........)))))).)..	chr19:47774860-47775178(+)$1	1	273	302	20.4414
.(((((((.............))))))).	chr22:35820125-35820399(+)$1	1	8	37	22.4637
.....................))))))))	chr16:20745051-20745316(-)$1	1	85	114	16.5185
(((.((((............).))).)))	chrX:153906239-153906480(-)$1	1	101	130	25.1736
((...(((............)))))))))	chr11:252682-252937(+)$1	1	152	181	24.7160
((...(((............)))...)))	chr19:54972226-54972442(+)$1	1	180	209	24.8032

#PSSM
d : 0.17	c : 0.12	g : 0.07	i : 0.07	# : 0.07	! : 0.07	e : 0.05	: : 0.05	% : 0.03	h : 0.03	" : 0.03	[ : 0.03	f : 0.03	' : 0.01	b : 0.01	= : 0.01	+ : 0.01	$ : 0.01	a : 0.01	^ : 0.01	
c : 0.12	f : 0.10	g : 0.10	d : 0.10	[ : 0.08	i : 0.07	# : 0.07	% : 0.03	e : 0.03	: : 0.03	h : 0.03	! : 0.03	" : 0.03	' : 0.01	b : 0.01	= : 0.01	a : 0.01	$ : 0.01	^ : 0.01	
f : 0.19	g : 0.10	" : 0.08	d : 0.08	c : 0.07	i : 0.07	e : 0.07	# : 0.05	! : 0.05	h : 0.03	[ : 0.03	% : 0.01	' : 0.01	= : 0.01	b : 0.01	a : 0.01	$ : 0.01	^ : 0.01	
f : 0.19	e : 0.12	! : 0.10	d : 0.08	" : 0.08	g : 0.07	i : 0.07	^ : 0.03	h : 0.03	c : 0.03	[ : 0.03	# : 0.03	b : 0.03	= : 0.01	$ : 0.01	
f : 0.19	d : 0.14	e : 0.14	" : 0.07	g : 0.07	! : 0.07	i : 0.07	c : 0.05	^ : 0.03	h : 0.03	[ : 0.03	b : 0.03	y : 0.01	= : 0.01	
f : 0.19	c : 0.16	d : 0.14	e : 0.14	g : 0.07	i : 0.07	^ : 0.03	y : 0.03	b : 0.03	[ : 0.03	h : 0.01	! : 0.01	a : 0.01	= : 0.01	
f : 0.17	c : 0.17	e : 0.14	d : 0.12	y : 0.07	i : 0.07	b : 0.05	g : 0.05	^ : 0.03	h : 0.01	w : 0.01	= : 0.01	a : 0.01	[ : 0.01	
w : 0.17	c : 0.12	f : 0.10	y : 0.08	d : 0.08	e : 0.07	v : 0.07	b : 0.05	i : 0.05	a : 0.03	^ : 0.03	x : 0.03	g : 0.03	= : 0.01	
u : 0.32	w : 0.17	v : 0.16	y : 0.08	t : 0.07	^ : 0.03	x : 0.03	f : 0.01	c : 0.01	= : 0.01	d : 0.01	b : 0.01	e : 0.01	
u : 0.32	w : 0.17	t : 0.17	v : 0.16	y : 0.08	^ : 0.03	x : 0.03	
u : 0.32	w : 0.17	t : 0.17	v : 0.16	y : 0.08	^ : 0.03	x : 0.03	
u : 0.32	w : 0.17	t : 0.17	v : 0.16	y : 0.08	^ : 0.03	x : 0.03	
u : 0.32	w : 0.17	t : 0.17	v : 0.16	y : 0.08	^ : 0.03	x : 0.03	
u : 0.32	w : 0.17	t : 0.17	v : 0.16	y : 0.08	^ : 0.03	x : 0.03	
u : 0.32	w : 0.17	t : 0.17	v : 0.16	y : 0.08	^ : 0.03	x : 0.03	
u : 0.32	w : 0.17	t : 0.17	v : 0.16	y : 0.08	^ : 0.03	x : 0.03	
u : 0.32	w : 0.17	t : 0.17	v : 0.16	y : 0.08	^ : 0.03	x : 0.03	
u : 0.32	w : 0.17	t : 0.17	v : 0.16	y : 0.08	^ : 0.03	x : 0.03	
u : 0.32	w : 0.17	t : 0.17	v : 0.16	y : 0.08	^ : 0.03	x : 0.03	
u : 0.32	w : 0.17	v : 0.16	t : 0.10	y : 0.08	^ : 0.03	x : 0.03	f : 0.03	c : 0.01	b : 0.01	
w : 0.16	c : 0.14	e : 0.08	f : 0.08	v : 0.08	a : 0.07	d : 0.07	y : 0.07	b : 0.07	i : 0.05	^ : 0.03	x : 0.03	= : 0.01	
c : 0.16	d : 0.14	f : 0.14	e : 0.10	] : 0.08	i : 0.07	y : 0.05	b : 0.05	g : 0.05	h : 0.03	x : 0.03	= : 0.03	^ : 0.01	
f : 0.19	c : 0.17	d : 0.16	e : 0.12	g : 0.07	i : 0.07	b : 0.05	h : 0.03	2 : 0.03	= : 0.03	^ : 0.01	y : 0.01	
f : 0.19	d : 0.16	e : 0.14	g : 0.08	b : 0.07	i : 0.07	c : 0.07	3 : 0.05	2 : 0.05	h : 0.03	= : 0.03	] : 0.01	
f : 0.19	e : 0.14	d : 0.10	g : 0.08	c : 0.08	3 : 0.07	i : 0.07	2 : 0.07	] : 0.05	h : 0.03	= : 0.03	: : 0.01	b : 0.01	
f : 0.16	] : 0.10	g : 0.08	3 : 0.08	e : 0.07	c : 0.07	i : 0.07	2 : 0.07	d : 0.07	6 : 0.03	h : 0.03	4 : 0.03	= : 0.03	0 : 0.01	: : 0.01	a : 0.01	
f : 0.12	d : 0.12	g : 0.10	c : 0.10	e : 0.08	i : 0.07	h : 0.05	2 : 0.05	3 : 0.05	6 : 0.03	] : 0.03	4 : 0.03	= : 0.03	a : 0.03	0 : 0.01	: : 0.01	
d : 0.17	g : 0.10	e : 0.10	c : 0.10	f : 0.07	] : 0.07	i : 0.07	h : 0.05	6 : 0.03	2 : 0.03	4 : 0.03	= : 0.03	3 : 0.03	0 : 0.01	> : 0.01	: : 0.01	
d : 0.23	c : 0.12	e : 0.10	i : 0.07	: : 0.07	g : 0.05	h : 0.05	> : 0.03	6 : 0.03	b : 0.03	2 : 0.03	4 : 0.03	= : 0.03	0 : 0.01	! : 0.01	f : 0.01	3 : 0.01	

#score	1258.2223367586555
#seq	56
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_CDS_m3_run1.txt

#BEAR
ddddoooooodddd	chrM:8349-8558(+)$1	209	183	197	13.0093
ddddoooooodddd	chrM:6291-6503(+)$1	212	20	34	13.0093
ddddoooooodddd	chrM:11972-12177(+)$1	205	87	101	13.0093
ddddoooooodddd	chrM:11970-12172(+)$1	202	89	103	13.0093
eeeeooooooeeee	chr19:41083788-41084110(+)$1	322	303	317	10.7241
!cccooooooccc2	chr19:41938186-41938486(-)$1	300	195	209	9.5697
ddddoooooodddd	chrM:7144-7349(+)$1	205	70	84	13.0093
ddddoooooodddd	chrM:12603-12868(+)$1	265	174	188	13.0093
ddddoooooodddd	chr22:24313705-24313928(-)$1	223	142	156	13.0093
ddddoooooodddd	chrM:11932-12139(+)$1	207	5	19	13.0093
d!!aooooooa22d	chr21:47613470-47613677(-)$1	207	145	159	10.6068
ddddoooooodddd	chrM:7158-7362(+)$1	204	50	64	13.0093
ddddoooooodddd	chrM:3667-3882(+)$1	215	20	34	13.0093
dd[aooooooa]dd	chr21:47612367-47612619(-)$1	252	128	142	11.8804
!cccooooooccc2	chr14:65233282-65233518(-)$1	236	215	229	9.5697
ddddoooooodddd	chrM:7187-7408(+)$1	221	37	51	13.0093
ddddoooooodddd	chr6:31715102-31715374(+)$1	272	70	84	13.0093
dd[aooooooa]dd	chr21:47612419-47612635(-)$1	216	144	158	11.8804
ddddoooooodddd	chrM:8358-8562(+)$1	204	174	188	13.0093
dd[aooooooa]dd	chr21:47612593-47612810(-)$1	217	87	101	11.8804
ddddoooooodddd	chrM:11977-12179(+)$1	202	82	96	13.0093
eeeeooooooeeee	chrM:9791-10002(+)$1	211	102	116	10.7241
ddddoooooodddd	chrM:3768-3987(+)$1	219	85	99	13.0093
ddddoooooodddd	chrM:3682-3901(+)$1	219	5	19	13.0093
ddddoooooodddd	chrM:3787-4003(+)$1	216	66	80	13.0093
eeeeooooooeeee	chr9:99699510-99699754(-)$1	244	195	209	10.7241
d!!aooooooa22d	chr21:47613493-47613702(-)$1	209	170	184	10.6068
ddddoooooodddd	chrM:3746-3957(+)$1	211	107	121	13.0093
ddddoooooodddd	chrM:12595-12803(+)$1	208	182	196	13.0093
ddddoooooodddd	chrM:3757-3968(+)$1	211	96	110	13.0093
ddddoooooodddd	chr5:38950305-38950618(-)$1	313	199	213	13.0093
ddddoooooodddd	chrM:7149-7358(+)$1	209	65	79	13.0093
eeeeooooooeeee	chrM:9784-9991(+)$1	207	109	123	10.7241
dd[aooooooa]dd	chr21:47612357-47612564(-)$1	207	73	87	11.8804
eeeeooooooeeee	chrM:9289-9516(+)$1	227	75	89	10.7241
eeeeooooooeeee	chrM:9773-9979(+)$1	206	120	134	10.7241
ddddoooooodddd	chr10:70516228-70516489(+)$1	261	148	162	13.0093
ddddoooooodddd	chr10:70516221-70516428(+)$1	207	155	169	13.0093
d!!aooooooa22d	chr21:47613502-47613706(-)$1	204	174	188	10.6068
dd[aooooooa]dd	chr20:57474841-57475104(+)$1	263	39	53	11.8804
eeeeooooooeeee	chrM:9779-9984(+)$1	205	114	128	10.7241
ddddoooooodddd	chrM:7208-7449(+)$1	241	6	20	13.0093
ddddoooooodddd	chrM:11985-12189(+)$1	204	74	88	13.0093
eeeeooooooeeee	chr9:99699353-99699596(-)$1	243	37	51	10.7241
ddddoooooodddd	chr10:50534854-50535129(+)$1	275	22	36	13.0093
ddddoooooodddd	chrM:11989-12208(+)$1	219	70	84	13.0093

#otherMatches

#Seq PSSM
CGAAAAUCUGUUCG	chrM:8349-8558(+)$1	209	183	197	13.0093
CUCCCACCCUGGAG	chrM:6291-6503(+)$1	212	20	34	13.0093
AACACCCUCAUGUU	chrM:11972-12177(+)$1	205	87	101	13.0093
AACACCCUCAUGUU	chrM:11970-12172(+)$1	202	89	103	13.0093
CCCAGUUCUAUGGG	chr19:41083788-41084110(+)$1	322	303	317	10.7241
UCGGACCUCCCUGC	chr19:41938186-41938486(-)$1	300	195	209	9.5697
CCGACGUUACUCGG	chrM:7144-7349(+)$1	205	70	84	13.0093
AGGAAUUAUAUCCU	chrM:12603-12868(+)$1	265	174	188	13.0093
AGUCCUGGCAGAUU	chr22:24313705-24313928(-)$1	223	142	156	13.0093
UCCUACUUACAGGA	chrM:11932-12139(+)$1	207	5	19	13.0093
acacacauacgcau	chr21:47613470-47613677(-)$1	207	145	159	10.6068
AAUGCCCCGACGUU	chrM:7158-7362(+)$1	204	50	64	13.0093
CGCCCUGAUCGGCG	chrM:3667-3882(+)$1	215	20	34	13.0093
auguacauacaggu	chr21:47612367-47612619(-)$1	252	128	142	11.8804
CCUCCCAGCAGAGC	chr14:65233282-65233518(-)$1	236	215	229	9.5697
UCGGACUACCCCGA	chrM:7187-7408(+)$1	221	37	51	13.0093
ACAGAUGCCACUGU	chr6:31715102-31715374(+)$1	272	70	84	13.0093
auguacauacaggu	chr21:47612419-47612635(-)$1	216	144	158	11.8804
CGAAAAUCUGUUCG	chrM:8358-8562(+)$1	204	174	188	13.0093
auguacacacaggu	chr21:47612593-47612810(-)$1	217	87	101	11.8804
AACACCCUCAUGUU	chrM:11977-12179(+)$1	202	82	96	13.0093
CAAACAUCACUUUG	chrM:9791-10002(+)$1	211	102	116	10.7241
AUAAUAUGAUUUAU	chrM:3768-3987(+)$1	219	85	99	13.0093
CGCCCUGAUCGGCG	chrM:3682-3901(+)$1	219	5	19	13.0093
AUAAUAUGAUUUAU	chrM:3787-4003(+)$1	216	66	80	13.0093
CCUGUGUCCCCAGG	chr9:99699510-99699754(-)$1	244	195	209	10.7241
acacacauacgcau	chr21:47613493-47613702(-)$1	209	170	184	10.6068
AUAAUAUGAUUUAU	chrM:3746-3957(+)$1	211	107	121	13.0093
AGGAAUUAUAUCCU	chrM:12595-12803(+)$1	208	182	196	13.0093
AUAAUAUGAUUUAU	chrM:3757-3968(+)$1	211	96	110	13.0093
CAUUGGAGAAAAUG	chr5:38950305-38950618(-)$1	313	199	213	13.0093
CCGACGUUACUCGG	chrM:7149-7358(+)$1	209	65	79	13.0093
CAAACAUCACUUUG	chrM:9784-9991(+)$1	207	109	123	10.7241
auguacauacaggu	chr21:47612357-47612564(-)$1	207	73	87	11.8804
CCAUAUACCAAUGG	chrM:9289-9516(+)$1	227	75	89	10.7241
CAAACAUCACUUUG	chrM:9773-9979(+)$1	206	120	134	10.7241
CAGCAGUAUAGUUG	chr10:70516228-70516489(+)$1	261	148	162	13.0093
CAGCAGUAUAGUUG	chr10:70516221-70516428(+)$1	207	155	169	13.0093
acacacauacgcau	chr21:47613502-47613706(-)$1	204	174	188	10.6068
ACCAUUGACUUAGU	chr20:57474841-57475104(+)$1	263	39	53	11.8804
CAAACAUCACUUUG	chrM:9779-9984(+)$1	205	114	128	10.7241
CCGACGUUACUCGG	chrM:7208-7449(+)$1	241	6	20	13.0093
AACACCCUCAUGUU	chrM:11985-12189(+)$1	204	74	88	13.0093
CCUGUGUCCCCAGG	chr9:99699353-99699596(-)$1	243	37	51	10.7241
UGCCACAGAAGGCA	chr10:50534854-50535129(+)$1	275	22	36	13.0093
AACACCCUCAUGUU	chrM:11989-12208(+)$1	219	70	84	13.0093

#DB
((((......))))	chrM:8349-8558(+)$1	1	183	197	13.0093
((((......))))	chrM:6291-6503(+)$1	1	20	34	13.0093
((((......))))	chrM:11972-12177(+)$1	1	87	101	13.0093
((((......))))	chrM:11970-12172(+)$1	1	89	103	13.0093
((((......))))	chr19:41083788-41084110(+)$1	1	303	317	10.7241
.(((......))).	chr19:41938186-41938486(-)$1	1	195	209	9.5697
((((......))))	chrM:7144-7349(+)$1	1	70	84	13.0093
((((......))))	chrM:12603-12868(+)$1	1	174	188	13.0093
((((......))))	chr22:24313705-24313928(-)$1	1	142	156	13.0093
((((......))))	chrM:11932-12139(+)$1	1	5	19	13.0093
(..(......)..)	chr21:47613470-47613677(-)$1	1	145	159	10.6068
((((......))))	chrM:7158-7362(+)$1	1	50	64	13.0093
((((......))))	chrM:3667-3882(+)$1	1	20	34	13.0093
((.(......).))	chr21:47612367-47612619(-)$1	1	128	142	11.8804
.(((......))).	chr14:65233282-65233518(-)$1	1	215	229	9.5697
((((......))))	chrM:7187-7408(+)$1	1	37	51	13.0093
((((......))))	chr6:31715102-31715374(+)$1	1	70	84	13.0093
((.(......).))	chr21:47612419-47612635(-)$1	1	144	158	11.8804
((((......))))	chrM:8358-8562(+)$1	1	174	188	13.0093
((.(......).))	chr21:47612593-47612810(-)$1	1	87	101	11.8804
((((......))))	chrM:11977-12179(+)$1	1	82	96	13.0093
((((......))))	chrM:9791-10002(+)$1	1	102	116	10.7241
((((......))))	chrM:3768-3987(+)$1	1	85	99	13.0093
((((......))))	chrM:3682-3901(+)$1	1	5	19	13.0093
((((......))))	chrM:3787-4003(+)$1	1	66	80	13.0093
((((......))))	chr9:99699510-99699754(-)$1	1	195	209	10.7241
(..(......)..)	chr21:47613493-47613702(-)$1	1	170	184	10.6068
((((......))))	chrM:3746-3957(+)$1	1	107	121	13.0093
((((......))))	chrM:12595-12803(+)$1	1	182	196	13.0093
((((......))))	chrM:3757-3968(+)$1	1	96	110	13.0093
((((......))))	chr5:38950305-38950618(-)$1	1	199	213	13.0093
((((......))))	chrM:7149-7358(+)$1	1	65	79	13.0093
((((......))))	chrM:9784-9991(+)$1	1	109	123	10.7241
((.(......).))	chr21:47612357-47612564(-)$1	1	73	87	11.8804
((((......))))	chrM:9289-9516(+)$1	1	75	89	10.7241
((((......))))	chrM:9773-9979(+)$1	1	120	134	10.7241
((((......))))	chr10:70516228-70516489(+)$1	1	148	162	13.0093
((((......))))	chr10:70516221-70516428(+)$1	1	155	169	13.0093
(..(......)..)	chr21:47613502-47613706(-)$1	1	174	188	10.6068
((.(......).))	chr20:57474841-57475104(+)$1	1	39	53	11.8804
((((......))))	chrM:9779-9984(+)$1	1	114	128	10.7241
((((......))))	chrM:7208-7449(+)$1	1	6	20	13.0093
((((......))))	chrM:11985-12189(+)$1	1	74	88	13.0093
((((......))))	chr9:99699353-99699596(-)$1	1	37	51	10.7241
((((......))))	chr10:50534854-50535129(+)$1	1	22	36	13.0093
((((......))))	chrM:11989-12208(+)$1	1	70	84	13.0093

#PSSM
d : 0.78	e : 0.17	! : 0.04	
d : 0.71	e : 0.17	! : 0.06	c : 0.04	
d : 0.60	e : 0.17	[ : 0.10	! : 0.06	c : 0.04	
d : 0.60	e : 0.17	a : 0.17	c : 0.04	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
d : 0.60	e : 0.17	a : 0.17	c : 0.04	
d : 0.60	e : 0.17	] : 0.10	2 : 0.06	c : 0.04	
d : 0.71	e : 0.17	2 : 0.06	c : 0.04	
d : 0.78	e : 0.17	2 : 0.04	

#score	560.4178100120303
#seq	46
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_transcript_m3_run2.txt

#BEAR
:bbccc[cccmmmmccc]ccc]bb:	chr20:306926-307180(+)$1	254	182	207	10.1171
ddd!!ccc[ammmma]ccc22dddd	chr2:171573695-171573918(+)$1	223	189	214	9.5224
gggggg!!bbmmmmbb333gggggg	chr7:75704113-75704330(-)$1	217	105	130	12.1952
gggggg[aooooooa]gggggggdd	chr6:32939513-32939732(+)$1	219	92	117	8.5888
cc[ddddcccmmmmccc]dddd]cc	chr12:103248850-103249116(-)$1	266	66	91	10.7241
eea!!a[cccmmmmccc]a22a]ee	chr19:56599213-56599469(-)$1	256	124	149	11.8071
[ccc"""cccmmmmccc]cccffff	chr5:79946944-79947201(-)$1	257	117	142	12.6317
gggggg[cccmmmmccc]ggggggg	chr14:69256598-69256867(-)$1	269	194	219	13.2747
=========oooooo==========	chr3:5025443-5025674(+)$1	231	92	117	9.1550
cc[ccc!!bbmmmmbb22ccc]ccc	chr6:139694478-139694722(-)$1	244	147	172	11.5887
##ccc!!cccmmmmccc22ccc444	chr4:124322974-124323231(+)$1	257	126	151	12.3173
ggggg!!cccmmmmcccggggggg]	chr18:60242432-60242680(+)$1	248	187	212	13.1233
[iiiiiiiiiooooooiiiiiiiii	chr2:97482463-97482702(+)$1	239	32	57	8.6406
ee[ccc[cccmmmmccc]ccceeee	chr12:49431432-49431698(-)$1	266	79	104	12.5227
eee[ffffffmmmmffffff]eeee	chr12:6438384-6438653(-)$1	269	230	255	9.7976
ff!!ffffffmmmmffffff]ffff	chr2:61413780-61414008(+)$1	228	162	187	10.2764
##a[ffffffmmmmffffffaeeee	chr21:34921687-34921917(+)$1	230	124	149	9.8754
ffff[a[cccmmmmcccaffffff9	chr10:88854235-88854481(-)$1	246	82	107	11.2748
ff$$$$$cccmmmmccc22ffffff	chr17:3512859-3513121(-)$1	262	121	146	10.8864
gggggeeeeemmmmeeeee4444gg	chr2:171573269-171573495(+)$1	226	46	71	9.0132
==========mmmm===========	chr20:54978707-54978946(+)$1	239	89	114	11.9555
[a[gggggggmmmmggggggg]a22	chr20:42086490-42086728(+)$1	238	47	72	11.2593
cca[ffffffmmmmffffff]a]cc	chr19:42795150-42795432(+)$1	282	165	190	10.2849
ggggg[ddddmmmmdddd]gggggg	chr2:241569802-241570050(+)$1	248	7	32	9.8937
bb[ccc[cccmmmmccc]ccc]bbc	chr14:54416994-54417235(-)$1	241	43	68	12.2204
!bb[ccccccmmmmccc]cccbbcc	chr6:138202284-138202563(+)$1	279	132	157	11.6056
[aeeeee[bbmmmmbbeeeee]a]c	chr21:44836490-44836743(-)$1	253	93	118	9.2493
[dddd!!cccmmmmccc333dddd]	chr10:79800295-79800541(+)$1	246	32	57	11.8854
ffffff!!bbmmmmbb22ffffff]	chr8:17400863-17401154(+)$1	291	202	227	10.7903
$$$gggggggmmmmggggggg22ee	chr7:100780738-100781028(+)$1	290	71	96	9.9419
fffccc!!bbmmmmbb22ccc]fff	chr15:41812457-41812735(-)$1	278	218	243	11.1354
!!eeeeecccmmmmccc]eeeee22	chr1:16475003-16475240(-)$1	237	41	66	10.7077
==========mmmm===========	chr22:37425605-37425878(+)$1	273	213	238	11.9555
ffff####bbmmmmbb333ffffff	chr2:28634799-28635053(+)$1	254	32	57	10.8532
cc[ccc[cccmmmmcccccc]ccc3	chr6:26123785-26124031(-)$1	246	198	223	12.7426
gggggggcccmmmmccc>>>>>>>>	chr14:73577585-73577866(+)$1	281	203	228	10.2610
[ggggggg[aooooooaggggggg]	chr19:10802605-10802892(+)$1	287	217	242	8.9031
ddd[bb[cccmmmmccc]bbdddd]	chr9:130551826-130552075(+)$1	249	174	199	10.9101
fffff!!cccmmmmcccffffff]b	chr10:101379836-101380098(-)$1	262	88	113	11.5879
ggg[ffffffmmmmffffff]gggg	chr16:70696585-70696810(-)$1	225	91	116	10.7622
cc[ccc!!bbmmmmbb22cccccc5	chr16:89267115-89267376(-)$1	261	212	237	10.7831
ddd[bb[cccmmmmccc]bbdddd]	chr9:130551931-130552199(+)$1	268	69	94	10.9101
gggggg[cccmmmmcccggggggg]	chr10:104181585-104181874(+)$1	289	115	140	13.0814
ddd[ccccccmmmmccc]ccc]ddd	chr14:23536806-23537054(-)$1	248	220	245	11.7184
bb[ccc[cccmmmmcccccc]bb22	chr8:143809067-143809362(+)$1	295	4	29	11.4321
ccc[ffffffmmmmffffffccc]d	chr17:18167522-18167799(+)$1	277	145	170	10.1682
ggggg"""bbmmmmbb22ggggggg	chr10:88853751-88853979(-)$1	228	170	195	11.6202
ccc[a[a[bbmmmmbb]a]a]cccd	chr20:61833796-61834053(-)$1	257	96	121	10.5056
bb[gggggggmmmmggggggg]bb:	chr17:38279005-38279249(+)$1	244	214	239	9.6923
gggg[a[cccmmmmccc]agggggg	chr16:75269821-75270070(-)$1	249	204	229	13.1288
"""ccc[cccmmmmcccccchhhhh	chr10:102743360-102743596(+)$1	236	22	47	11.6146
[dddd!!cccmmmmccc333dddd]	chr10:79800268-79800495(+)$1	227	59	84	11.8854
ee[ccc[cccmmmmccc]ccceeee	chr2:171573988-171574216(+)$1	228	124	149	12.5227
fffff!!cccmmmmccc22ffffff	chr6:44218754-44218991(+)$1	237	141	166	11.9730

#otherMatches

#Seq PSSM
ACCCCGGGGCGGGAGCUGUGGAGGA	chr20:306926-307180(+)$1	254	182	207	10.1171
GUUAAGCGGGAGGACGCGCGGGACC	chr2:171573695-171573918(+)$1	223	189	214	9.5224
CUUGCCUCGCGGCAGCCUUGGCAAG	chr7:75704113-75704330(-)$1	217	105	130	12.1952
GAGGCUCUGGGGCGAUGGCUUCCGC	chr6:32939513-32939732(+)$1	219	92	117	8.5888
GUUCAAGACUCUGAAGUCCUUGUAU	chr12:103248850-103249116(-)$1	266	66	91	10.7241
GGCGGGAGCGACGACGUGCAAGACC	chr19:56599213-56599469(-)$1	256	124	149	11.8071
AGUUGAACAGGGCCCUGAAGCGCGU	chr5:79946944-79947201(-)$1	257	117	142	12.6317
CCAGCAUAGCUUUAGCUUUGCUGGG	chr14:69256598-69256867(-)$1	269	194	219	13.2747
uguguaugugcgugugcgugcacau	chr3:5025443-5025674(+)$1	231	92	117	9.1550
CUCGGGCGGCAGCAGCACCCCCGGC	chr6:139694478-139694722(-)$1	244	147	172	11.5887
AGUGCAGCCAGCUCUGGGAGCAACA	chr4:124322974-124323231(+)$1	257	126	151	12.3173
AGGAUUUGGGAGAUUCUAUCCUGUA	chr18:60242432-60242680(+)$1	248	187	212	13.1233
UGGCGCCUGCCGAGGUGCAGGUGCU	chr2:97482463-97482702(+)$1	239	32	57	8.6406
UCUAGCAGUGGGCACACAGCUGAGA	chr12:49431432-49431698(-)$1	266	79	104	12.5227
CCCACUUUUUUCUGGAAAGGAGGGG	chr12:6438384-6438653(-)$1	269	230	255	9.7976
UUACUUUUUGUAAGCGGAAAAAGUG	chr2:61413780-61414008(+)$1	228	162	187	10.2764
GCGUAUCUGUACAAACAGAUCCUAC	chr21:34921687-34921917(+)$1	230	124	149	9.8754
CGGGGCUGGCAUUGGCCGCCCGGCG	chr10:88854235-88854481(-)$1	246	82	107	11.2748
CCAGAAGCCCUCAUGGGAAGGGAUG	chr17:3512859-3513121(-)$1	262	121	146	10.8864
gggccUCCGGGGUUCCGGGAAGCGG	chr2:171573269-171573495(+)$1	226	46	71	9.0132
UAGGGUUCUUUCUCGAGGACUCUAC	chr20:54978707-54978946(+)$1	239	89	114	11.9555
UGUGUGGCUGGACUCGGCCGCCCCU	chr20:42086490-42086728(+)$1	238	47	72	11.2593
GGAGUGGCCCCAAUGGGCCAGUACC	chr19:42795150-42795432(+)$1	282	165	190	10.2849
CCUGGUGGCUCGCUGGCUCCUGGGG	chr2:241569802-241570050(+)$1	248	7	32	9.8937
GUGGGAAUUGGGCCCAGCUCCGGCC	chr14:54416994-54417235(-)$1	241	43	68	12.2204
CUGCAACGAAUGCUUUCAGUUCAAG	chr6:138202284-138202563(+)$1	279	132	157	11.6056
CCCUAGGCACGUUUGUCCUGGUGCA	chr21:44836490-44836743(-)$1	253	93	118	9.2493
UUUUAAAGGCAGUUGUUGACUAAAC	chr10:79800295-79800541(+)$1	246	32	57	11.8854
UCAUUGCUGCCCUGGCUUCAGUGAU	chr8:17400863-17401154(+)$1	291	202	227	10.7903
UGACUCUUUCUGAAGGAAGAGAAGA	chr7:100780738-100781028(+)$1	290	71	96	9.9419
GGAGCUUUGGAAGACCUCAGCUUCC	chr15:41812457-41812735(-)$1	278	218	243	11.1354
AGGAGCGCUCCGUGGGGCCGCUCAC	chr1:16475003-16475240(-)$1	237	41	66	10.7077
GUUUUAUUUUUGAGGAAAUAAAAUA	chr22:37425605-37425878(+)$1	273	213	238	11.9555
GCAGAAGGAGAUUGCUGAGCUGCAG	chr2:28634799-28635053(+)$1	254	32	57	10.8532
CCUGCUGCUUCCCGGAGAGCUGGCC	chr6:26123785-26124031(-)$1	246	198	223	12.7426
UUCCUCAUGAAAACUCACCAGAUCA	chr14:73577585-73577866(+)$1	281	203	228	10.2610
ACCUUGCUUGUGUAGUCAGCAGGGC	chr19:10802605-10802892(+)$1	287	217	242	8.9031
GGGCACUGGAGCUGUCUUGUCCUUG	chr9:130551826-130552075(+)$1	249	174	199	10.9101
UGCUGGACGGGUGGCUGCAgcgggg	chr10:101379836-101380098(-)$1	262	88	113	11.5879
UAGCCACCUUUCGGGGGGUGACUGG	chr16:70696585-70696810(-)$1	225	91	116	10.7622
GGCGGCAGGGACCUCCAGGCCCCUU	chr16:89267115-89267376(-)$1	261	212	237	10.7831
GGGCACUGGAGCUGUCUUGUCCUUG	chr9:130551931-130552199(+)$1	268	69	94	10.9101
GCGGCUGCGGGCAACUGAGUCGCCG	chr10:104181585-104181874(+)$1	289	115	140	13.0814
GGGCCAGGACUGAUGUCUCUGCCCC	chr14:23536806-23537054(-)$1	248	220	245	11.7184
CGUGCGCGCGCCACCGCCGCUCGCU	chr8:143809067-143809362(+)$1	295	4	29	11.4321
GCCUGGCCCCUGGAGGGGCUGGCGG	chr17:18167522-18167799(+)$1	277	145	170	10.1682
ACCGGUCUCCUUUUGGUCCCGGUGU	chr10:88853751-88853979(-)$1	228	170	195	11.6202
UUUUUGUGGGGUGGCCGAGAUGAAG	chr20:61833796-61834053(-)$1	257	96	121	10.5056
GCCGCAGCCGGAGCCGGCUGCAGCC	chr17:38279005-38279249(+)$1	244	214	239	9.6923
UCGGUGAGCAAGGAUGUGCCCGAUG	chr16:75269821-75270070(-)$1	249	204	229	13.1288
CUGAUGUGAGACUGCUCUAUGUGCU	chr10:102743360-102743596(+)$1	236	22	47	11.6146
UUUUAAAGGCAGUUGUUGACUAAAC	chr10:79800268-79800495(+)$1	227	59	84	11.8854
GCAUUUGGAUUGUAAUUGGGAGCUC	chr2:171573988-171574216(+)$1	228	124	149	12.5227
GUCCGCCGUGUGUUCAUCAUGGACA	chr6:44218754-44218991(+)$1	237	141	166	11.9730

#DB
.(((((.(((....))).))).)).	chr20:306926-307180(+)$1	1	182	207	10.1171
(((..(((.(....).)))..))))	chr2:171573695-171573918(+)$1	1	189	214	9.5224
((((((..((....))...))))))	chr7:75704113-75704330(-)$1	1	105	130	12.1952
((((((.(......).)))))))))	chr6:32939513-32939732(+)$1	1	92	117	8.5888
((.(((((((....))).)))).))	chr12:103248850-103249116(-)$1	1	66	91	10.7241
(((..(.(((....))).)..).))	chr19:56599213-56599469(-)$1	1	124	149	11.8071
.(((...(((....))).)))))))	chr5:79946944-79947201(-)$1	1	117	142	12.6317
((((((.(((....))).)))))))	chr14:69256598-69256867(-)$1	1	194	219	13.2747
(((((((((......))))))))))	chr3:5025443-5025674(+)$1	1	92	117	9.1550
((.(((..((....))..))).)))	chr6:139694478-139694722(-)$1	1	147	172	11.5887
..(((..(((....)))..)))...	chr4:124322974-124323231(+)$1	1	126	151	12.3173
(((((..(((....)))))))))).	chr18:60242432-60242680(+)$1	1	187	212	13.1233
.(((((((((......)))))))))	chr2:97482463-97482702(+)$1	1	32	57	8.6406
((.(((.(((....))).)))))))	chr12:49431432-49431698(-)$1	1	79	104	12.5227
(((.((((((....)))))).))))	chr12:6438384-6438653(-)$1	1	230	255	9.7976
((..((((((....)))))).))))	chr2:61413780-61414008(+)$1	1	162	187	10.2764
..(.((((((....)))))))))))	chr21:34921687-34921917(+)$1	1	124	149	9.8754
((((.(.(((....)))))))))).	chr10:88854235-88854481(-)$1	1	82	107	11.2748
((.....(((....)))..))))))	chr17:3512859-3513121(-)$1	1	121	146	10.8864
((((((((((....)))))....))	chr2:171573269-171573495(+)$1	1	46	71	9.0132
((((((((((....)))))))))))	chr20:54978707-54978946(+)$1	1	89	114	11.9555
.(.(((((((....))))))).)..	chr20:42086490-42086728(+)$1	1	47	72	11.2593
(((.((((((....)))))).).))	chr19:42795150-42795432(+)$1	1	165	190	10.2849
(((((.((((....)))).))))))	chr2:241569802-241570050(+)$1	1	7	32	9.8937
((.(((.(((....))).))).)))	chr14:54416994-54417235(-)$1	1	43	68	12.2204
.((.((((((....))).)))))))	chr6:138202284-138202563(+)$1	1	132	157	11.6056
.((((((.((....))))))).).)	chr21:44836490-44836743(-)$1	1	93	118	9.2493
.((((..(((....)))...)))).	chr10:79800295-79800541(+)$1	1	32	57	11.8854
((((((..((....))..)))))).	chr8:17400863-17401154(+)$1	1	202	227	10.7903
...(((((((....)))))))..))	chr7:100780738-100781028(+)$1	1	71	96	9.9419
((((((..((....))..))).)))	chr15:41812457-41812735(-)$1	1	218	243	11.1354
..((((((((....))).)))))..	chr1:16475003-16475240(-)$1	1	41	66	10.7077
((((((((((....)))))))))))	chr22:37425605-37425878(+)$1	1	213	238	11.9555
((((....((....))...))))))	chr2:28634799-28635053(+)$1	1	32	57	10.8532
((.(((.(((....)))))).))).	chr6:26123785-26124031(-)$1	1	198	223	12.7426
((((((((((....)))........	chr14:73577585-73577866(+)$1	1	203	228	10.2610
.(((((((.(......)))))))).	chr19:10802605-10802892(+)$1	1	217	242	8.9031
(((.((.(((....))).)))))).	chr9:130551826-130552075(+)$1	1	174	199	10.9101
(((((..(((....))))))))).)	chr10:101379836-101380098(-)$1	1	88	113	11.5879
(((.((((((....)))))).))))	chr16:70696585-70696810(-)$1	1	91	116	10.7622
((.(((..((....))..)))))).	chr16:89267115-89267376(-)$1	1	212	237	10.7831
(((.((.(((....))).)))))).	chr9:130551931-130552199(+)$1	1	69	94	10.9101
((((((.(((....)))))))))).	chr10:104181585-104181874(+)$1	1	115	140	13.0814
(((.((((((....))).))).)))	chr14:23536806-23537054(-)$1	1	220	245	11.7184
((.(((.(((....)))))).))..	chr8:143809067-143809362(+)$1	1	4	29	11.4321
(((.((((((....))))))))).)	chr17:18167522-18167799(+)$1	1	145	170	10.1682
(((((...((....))..)))))))	chr10:88853751-88853979(-)$1	1	170	195	11.6202
(((.(.(.((....)).).).))))	chr20:61833796-61834053(-)$1	1	96	121	10.5056
((.(((((((....))))))).)).	chr17:38279005-38279249(+)$1	1	214	239	9.6923
((((.(.(((....))).)))))))	chr16:75269821-75270070(-)$1	1	204	229	13.1288
...(((.(((....)))))))))))	chr10:102743360-102743596(+)$1	1	22	47	11.6146
.((((..(((....)))...)))).	chr10:79800268-79800495(+)$1	1	59	84	11.8854
((.(((.(((....))).)))))))	chr2:171573988-171574216(+)$1	1	124	149	12.5227
(((((..(((....)))..))))))	chr6:44218754-44218991(+)$1	1	141	166	11.9730

#PSSM
g : 0.20	f : 0.14	c : 0.12	[ : 0.12	d : 0.07	e : 0.07	= : 0.05	b : 0.05	# : 0.03	! : 0.03	: : 0.01	$ : 0.01	" : 0.01	
g : 0.22	c : 0.14	f : 0.14	d : 0.11	b : 0.09	e : 0.07	= : 0.05	# : 0.03	a : 0.03	i : 0.01	$ : 0.01	! : 0.01	" : 0.01	
g : 0.22	[ : 0.18	d : 0.11	f : 0.11	c : 0.07	a : 0.05	= : 0.05	e : 0.05	b : 0.03	$ : 0.03	i : 0.01	! : 0.01	" : 0.01	
g : 0.25	c : 0.22	[ : 0.18	f : 0.09	! : 0.05	d : 0.05	= : 0.05	e : 0.03	i : 0.01	$ : 0.01	
c : 0.24	g : 0.24	f : 0.16	d : 0.05	= : 0.05	! : 0.03	[ : 0.03	e : 0.03	b : 0.03	" : 0.01	i : 0.01	$ : 0.01	# : 0.01	a : 0.01	
c : 0.24	g : 0.16	f : 0.12	! : 0.11	a : 0.05	= : 0.05	e : 0.05	" : 0.03	[ : 0.03	b : 0.03	d : 0.01	i : 0.01	$ : 0.01	# : 0.01	
[ : 0.27	! : 0.20	f : 0.11	g : 0.09	c : 0.05	= : 0.05	e : 0.05	d : 0.03	" : 0.03	i : 0.01	$ : 0.01	# : 0.01	a : 0.01	
c : 0.51	f : 0.11	! : 0.09	g : 0.07	= : 0.05	[ : 0.03	a : 0.01	i : 0.01	e : 0.01	d : 0.01	# : 0.01	" : 0.01	
c : 0.49	b : 0.16	f : 0.11	= : 0.05	g : 0.05	[ : 0.03	o : 0.01	i : 0.01	e : 0.01	d : 0.01	
c : 0.49	b : 0.16	f : 0.11	g : 0.05	a : 0.03	o : 0.03	= : 0.03	i : 0.01	e : 0.01	d : 0.01	
m : 0.92	o : 0.07	
m : 0.92	o : 0.07	
m : 0.92	o : 0.07	
m : 0.92	o : 0.07	
c : 0.49	b : 0.16	f : 0.11	o : 0.05	g : 0.05	a : 0.03	= : 0.03	e : 0.01	d : 0.01	
c : 0.49	b : 0.16	f : 0.11	= : 0.05	g : 0.05	] : 0.03	o : 0.03	e : 0.01	d : 0.01	
c : 0.51	f : 0.11	2 : 0.09	g : 0.07	= : 0.05	3 : 0.03	e : 0.03	i : 0.01	d : 0.01	a : 0.01	] : 0.01	
] : 0.25	2 : 0.14	g : 0.12	f : 0.12	c : 0.07	3 : 0.07	= : 0.05	a : 0.03	e : 0.03	i : 0.01	d : 0.01	> : 0.01	
c : 0.25	g : 0.16	f : 0.16	3 : 0.07	= : 0.05	2 : 0.05	e : 0.05	a : 0.03	] : 0.03	b : 0.03	d : 0.01	i : 0.01	> : 0.01	
c : 0.25	g : 0.22	f : 0.22	= : 0.05	2 : 0.03	e : 0.03	3 : 0.03	b : 0.03	d : 0.01	i : 0.01	4 : 0.01	> : 0.01	a : 0.01	
c : 0.22	g : 0.22	] : 0.12	f : 0.11	d : 0.09	= : 0.05	2 : 0.03	e : 0.03	i : 0.01	a : 0.01	4 : 0.01	> : 0.01	h : 0.01	
g : 0.18	] : 0.14	f : 0.14	d : 0.11	c : 0.09	e : 0.09	= : 0.05	a : 0.03	b : 0.03	i : 0.01	4 : 0.01	2 : 0.01	> : 0.01	h : 0.01	
g : 0.18	f : 0.16	d : 0.11	b : 0.09	c : 0.09	e : 0.09	] : 0.05	= : 0.05	4 : 0.03	a : 0.03	i : 0.01	2 : 0.01	> : 0.01	h : 0.01	
g : 0.18	f : 0.14	d : 0.12	c : 0.12	e : 0.11	b : 0.05	= : 0.05	2 : 0.05	] : 0.05	4 : 0.01	i : 0.01	> : 0.01	h : 0.01	
] : 0.14	g : 0.12	c : 0.11	e : 0.11	f : 0.11	d : 0.09	= : 0.05	2 : 0.05	: : 0.03	4 : 0.01	i : 0.01	9 : 0.01	3 : 0.01	> : 0.01	b : 0.01	5 : 0.01	h : 0.01	

#score	597.2765310377328
#seq	54
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_UTR_m2_run1.txt

#BEAR
iii::ccc"""eeeeemmmmeeeee22cccggg	chr16:4588169-4588433(-)$1	264	191	224	13.6356
eeeee[ccc[ffffffmmmmffffff]ccceee	chr6:24666897-24667209(-)$1	312	75	108	10.2667
"eeeee!!bb[eeeeemmmmeeeee]bb]eeee	chr7:150780075-150780305(-)$1	230	129	162	15.0435
ffff[ccc####eeeeellleeeee22ccc]ff	chr1:17929912-17930130(+)$1	218	30	63	14.1270
eeee[ccc!!bbddddmmmmdddd]bb4444cc	chr8:74658972-74659225(-)$1	253	117	150	11.4231
eeee[a[bb!!eeeeemmmmeeeee]bba]eee	chr12:121416337-121416615(+)$1	278	224	257	15.5514
ffffff[a####eeeeellleeeeeaffffffc	chr17:17713613-17713935(+)$1	322	10	43	13.3820
c[bb[bbddddaeeeeellleeeee333a]ddd	chr7:102004570-102004837(+)$1	267	18	51	12.2589
ggggggccc[a[ddddmmmmdddd]a]ccc]gg	chr3:33481304-33481609(-)$1	305	36	69	12.2074
[dddd[a[bb[addddmmmmdddd]a]bb]a]d	chr19:1271448-1271657(+)$1	209	35	68	11.4717
b[eeeee!!a"""cccmmmmccc22a22eeeee	chr2:101620955-101621220(+)$1	265	136	169	10.6191
"""ccc"""ggggggglllggggggg333ccc2	chr16:30087469-30087695(+)$1	226	72	105	10.7454
[a[dddd[a[eeeeennnnneeeeea]dddd]a	chr1:1284346-1284642(-)$1	296	115	148	13.2955
iiiiiiii!!eeeeennnnneeeee4444iiii	chr1:155243030-155243289(-)$1	259	148	181	14.4246
eeee[a[a[ccc[cccmmmmccc]ccc]a]a]e	chrX:41193682-41193964(+)$1	282	98	131	10.2918
&ccc[eeeee[eeeeellleeeeeeeeee]ccc	chr16:28875558-28875843(+)$1	285	119	152	12.5641
ddddd!!bb!!eeeeellleeeee22bb22ddd	chr11:65315625-65315972(-)$1	347	14	47	12.8170
ggggggg[abbddddammmma]dddd]bb]a]g	chr3:33481570-33481867(-)$1	297	167	200	10.4960
::ggggggg!!eeeeeooooooeeeee]ggggg	chr7:150066574-150066871(+)$1	297	137	170	11.4968
a"""eeeee!!ddddoooooodddd22eeeee3	chr19:12811662-12811916(-)$1	254	22	55	11.3944
eeee[dddd!!eeeeemmmmeeeee]ddddeee	chr11:47488487-47488819(-)$1	332	85	118	14.5086
ffffff!!bb[eeeeemmmmeeeeebb]fffff	chr6:42984812-42985089(+)$1	277	238	271	13.8428
eeeee[ccc!!eeeeellleeeeeccceeeeee	chr7:129710470-129710785(+)$1	315	177	210	14.0962
####ffffff!!ddddmmmmdddd333ffffff	chr7:128828857-128829127(+)$1	270	118	151	11.3582
44ccceeeee[eeeeemmmmeeeee333eeeee	chr14:24615711-24616009(-)$1	298	236	269	14.5114
[eeeee$$$$$eeeeellleeeeeeeeeeeeee	chr16:30935585-30935817(+)$1	232	74	107	13.8426
d[dddd[bb[eeeeennnnneeeee333bb]dd	chr7:150756628-150756906(+)$1	278	163	196	13.2082
[dddd[ccc!!eeeeemmmmeeeeeccc]dddd	chr1:151137638-151138064(-)$1	426	340	373	14.6338
[ffffff####eeeeemmmmeeeee22ffffff	chr19:12811716-12811956(-)$1	240	134	167	15.2103
a[ggggggg[aeeeeemmmmeeeee]a]ggggg	chr2:32235519-32235790(-)$1	271	57	90	15.1963
Feeeee[bb[eeeeeooooooeeeee]bb]eee	chr17:48459982-48460270(-)$1	288	147	180	13.3048
""ggggggg!!eeeeemmmmeeeee4444gggg	chr16:2110690-2110958(+)$1	268	64	97	16.2012
[a"""eeeee!!ddddmmmmdddd22eeeee33	chr19:10679420-10679722(-)$1	302	232	265	10.9414
[ffffffbb[eeeeennnnneeeeebb4444ff	chr15:79165185-79165478(+)$1	293	30	63	12.9080
e[eeeee[bb[eeeeemmmmeeeeebb]eeeee	chrX:20284754-20284966(-)$1	212	34	67	14.5669
eeee[a####eeeeennnnneeeee333a]eee	chr6:31619947-31620212(-)$1	265	1	34	15.6074
e!!bb[bb[a[eeeeellleeeee]a]bb]bb2	chr9:126030574-126030849(-)$1	275	162	195	12.4355
ccc[ggggggg[ddddmmmmdddd]ggggggg2	chr11:64950033-64950342(+)$1	309	164	197	10.7383
c[cccccc[bb[ddddmmmmdddd]bb]ccc22	chr2:190648765-190649105(-)$1	340	31	64	10.2798
::eeeee[a[aeeeeellleeeee]a]a]eeee	chr5:179248516-179248777(+)$1	261	107	140	12.8884
ccc!!dddd!!eeeeennnnneeeeeddddccc	chr2:46926278-46926585(+)$1	307	214	247	12.1675
ffffff[ccc[eeeeemmmmeeeeeccc22fff	chr8:145650874-145651142(-)$1	268	160	193	13.9927
b[ccc[ccceeeeeooooooeeeee]ccc]ccc	chr10:104503704-104503995(+)$1	291	207	240	12.9311
bb[dddd"""eeeeeooooooeeeee]dddd]b	chr6:31915081-31915343(+)$1	262	41	74	12.5359
"""eeeee!!eeeeeooooooeeeee4444eee	chr10:21823290-21823528(+)$1	238	165	198	14.7077
e[dddda####ddddoooooodddd22a]dddd	chr16:27325107-27325450(+)$1	343	97	130	11.6360
ffff!!a####eeeeemmmmeeeee4444a22f	chr7:1577498-1577746(+)$1	248	53	86	15.6707
dd####ccc[eeeeennnnneeeee]ccc]ddd	chr12:53574414-53574714(+)$1	300	255	288	13.0778
!eeeee$$$$$eeeeennnnneeeee4444eee	chr12:122239794-122240070(-)$1	276	227	260	14.1092
###cccccc[eeeeennnnneeeee]ccc]ccc	chr11:47199178-47199455(-)$1	277	107	140	13.7933
fffff"""bb[eeeeemmmmeeeeebb22ffff	chr9:123342168-123342463(-)$1	295	219	252	13.7015

#otherMatches

#Seq PSSM
GGGAUGUCGAAGCCGCUGCGGUggcggggcccg	chr16:4588169-4588433(-)$1	264	191	224	13.6356
GCCUCCUGUUCCGCUUAAAGGGGCGGUGCAGAG	chr6:24666897-24667209(-)$1	312	75	108	10.2667
GCCGCGGGUGGGGUUUAGGUGAACCGUAACGCG	chr7:150780075-150780305(-)$1	230	129	162	15.0435
CACCUCUGGCCAGGCUGCCACAGCCCACGGUGG	chr1:17929912-17930130(+)$1	218	30	63	14.1270
AGGGGUGGAAGCCGGCGGCGGCCGAGCGGGGUC	chr8:74658972-74659225(-)$1	253	117	150	11.4231
CAGCCGAGCCAUGGUUUCUAAACUGAGCCAGCU	chr12:121416337-121416615(+)$1	278	224	257	15.5514
GGGAGACGGCUUUGUCCUGGGGACACUUUCCCU	chr17:17713613-17713935(+)$1	322	10	43	13.3820
GGCGACGGGACCUGGGCCUGGCCCGUGUGUGUC	chr7:102004570-102004837(+)$1	267	18	51	12.2589
cgggaggguggcgcugccggcggcCCGGCCGCU	chr3:33481304-33481609(-)$1	305	36	69	12.2074
GUCCCUUGGGGAUGCUGUGAGGUACUGCUGGUG	chr19:1271448-1271657(+)$1	209	35	68	11.4717
ACAUCAUGGCAAGUCCACCAGGAGAGAaguggu	chr2:101620955-101621220(+)$1	265	136	169	10.6191
GGGGGUGGGGGAGCCGGGCCGGCUCUAGAAUCG	chr16:30087469-30087695(+)$1	226	72	105	10.7454
gcaggcgggcgggcgggUAgcgccccgcguccg	chr1:1284346-1284642(-)$1	296	115	148	13.2955
GCCCGGGAACGGGGCGGGAGGUCCCAGGGUCCC	chr1:155243030-155243289(-)$1	259	148	181	14.4246
UUUUGUGUGUGCGUGCGCAGGCGGGCGGAGGGG	chrX:41193682-41193964(+)$1	282	98	131	10.2918
GGCUGGGUCUGUCUGCGGUGCGGAGGAUUGGGU	chr16:28875558-28875843(+)$1	285	119	152	12.5641
CCUGGGGCAAGGGCUUAUGGAGUCACUGGGCUA	chr11:65315625-65315972(-)$1	347	14	47	12.8170
GCCUCCCAGCGGUCCCGGAGGAGGAUGCGACCG	chr3:33481570-33481867(-)$1	297	167	200	10.4960
CUAGAGGAGCUCAGAGCCUCACUUCUGUUUUCU	chr7:150066574-150066871(+)$1	297	137	170	11.4968
GCAGGUGGGUGGGGCCACCAUGCUCAUCCUACA	chr19:12811662-12811916(-)$1	254	22	55	11.3944
CCAGACUUAAGCUGCUGGUGGGUGGGUGAGCUG	chr11:47488487-47488819(-)$1	332	85	118	14.5086
CUGCGUCAGAUAGAUGUGCACAUUUUCAAUGCA	chr6:42984812-42985089(+)$1	277	238	271	13.8428
AGGUGAGUCGUGGGACAGGGUCCUGACCGCUUG	chr7:129710470-129710785(+)$1	315	177	210	14.0962
AGUUGGCGGGGUUGGCCAUGGCCGCUGCCCGCC	chr7:128828857-128829127(+)$1	270	118	151	11.3582
GGUGCGCCUGAGCGGGGAAGCCCGCAAACAGGU	chr14:24615711-24616009(-)$1	298	236	269	14.5114
CGUGGACCCCGGCGUUCUGAGCGUUccgcgccc	chr16:30935585-30935817(+)$1	232	74	107	13.8426
CGCCGGAGGACGGGGAGAGACCCCGAGACCCCC	chr7:150756628-150756906(+)$1	278	163	196	13.2082
CGUCUAGACAGCCCCCGCCAGGGGGGUCAGGAC	chr1:151137638-151138064(-)$1	426	340	373	14.6338
CUGGGCUCUAAUAGGGUCAUCUCUGGCAGCCCA	chr19:12811716-12811956(-)$1	240	134	167	15.2103
cggagucacggggguggggucacucgcgguggc	chr2:32235519-32235790(-)$1	271	57	90	15.1963
UUACCUGCAUGCCUAAAGGAGUAGGCUUGGGGG	chr17:48459982-48460270(-)$1	288	147	180	13.3048
CAGGUGGUGGCGUGGGACAUUCUGCUGAACAUC	chr16:2110690-2110958(+)$1	268	64	97	16.2012
CGGGGUCUCGGGCUGGGGAGCCGGGACGGGAGA	chr19:10679420-10679722(-)$1	302	232	265	10.9414
GUCUGCGGGCGCUGGCAAAUCCGGCCCAGGAUG	chr15:79165185-79165478(+)$1	293	30	63	12.9080
GUCGGCGUCGAGCCCUCUCUGGGgccgccgccg	chrX:20284754-20284966(-)$1	212	34	67	14.5669
GUCGGUGGCAGGUUUGGGGGAGACCGGAAGUGA	chr6:31619947-31620212(-)$1	265	1	34	15.6074
ugcgcggcgggccgucccgggcgggcggcgguu	chr9:126030574-126030849(-)$1	275	162	195	12.4355
UGUACUGCACUGGGGUGUCAGCCCAAGUGCAGA	chr11:64950033-64950342(+)$1	309	164	197	10.7383
CGGGCCUGAGGGCGUGUAUCCGCGGCCGUAGCA	chr2:190648765-190649105(-)$1	340	31	64	10.2798
AGCGCGGGGGUGCGGGGGACUCGCGAGCGCCGC	chr5:179248516-179248777(+)$1	261	107	140	12.8884
GGCAGGCGGACUCGCCCUGUCGGUGACUGCGCC	chr2:46926278-46926585(+)$1	307	214	247	12.1675
GCUGGGAGGCACCCACUUGUGUGGGGCCCACCC	chr8:145650874-145651142(-)$1	268	160	193	13.9927
GGGGCGUCUGGGCCAUGUUGGGUCCUGGGGGUC	chr10:104503704-104503995(+)$1	291	207	240	12.9311
AGCGGGGUACUGCUCCAACCCGGGCAUCCCCAU	chr6:31915081-31915343(+)$1	262	41	74	12.5359
GAGCGGUGGGCUgccgggccgggcggggggcgc	chr10:21823290-21823528(+)$1	238	165	198	14.7077
ggggagcaggaagccggggcgggCUGGGUCUCC	chr16:27325107-27325450(+)$1	343	97	130	11.6360
GCUGCUCUGAUGUUCCUGUGGGAACCUGUGUCU	chr7:1577498-1577746(+)$1	248	53	86	15.6707
GCUUCAGUAGCUCGCAAGCCGUGGGGUGCCGCG	chr12:53574414-53574714(+)$1	300	255	288	13.0778
ACACCAACGUUAAGUGGGGGGUAUUUUCUAUGG	chr12:122239794-122240070(-)$1	276	227	260	14.1092
GGACCCAGGGAGGGGAGGGGCCUUUGUCUAGGG	chr11:47199178-47199455(-)$1	277	107	140	13.7933
GUGUUGGAAGAGGACGUCACCGUCCCUGGGACG	chr9:123342168-123342463(-)$1	295	219	252	13.7015

#DB
)))..(((...(((((....)))))..)))(((	chr16:4588169-4588433(-)$1	1	191	224	13.6356
(((((.(((.((((((....)))))).))))))	chr6:24666897-24667209(-)$1	1	75	108	10.2667
.(((((..((.(((((....))))).)).))))	chr7:150780075-150780305(-)$1	1	129	162	15.0435
((((.(((....(((((...)))))..))).))	chr1:17929912-17930130(+)$1	1	30	63	14.1270
((((.(((..((((((....)))).))....))	chr8:74658972-74659225(-)$1	1	117	150	11.4231
((((.(.((..(((((....))))).))).)))	chr12:121416337-121416615(+)$1	1	224	257	15.5514
((((((.(....(((((...))))))))))))(	chr17:17713613-17713935(+)$1	1	10	43	13.3820
(.((.((((((((((((...)))))...).)))	chr7:102004570-102004837(+)$1	1	18	51	12.2589
(((((((((.(.((((....)))).).))).))	chr3:33481304-33481609(-)$1	1	36	69	12.2074
.((((.(.((.(((((....)))).).)).).)	chr19:1271448-1271657(+)$1	1	35	68	11.4717
(.(((((..(...(((....)))..)..)))))	chr2:101620955-101621220(+)$1	1	136	169	10.6191
...(((...(((((((...)))))))...))).	chr16:30087469-30087695(+)$1	1	72	105	10.7454
.(.((((.(.(((((.....)))))).)))).)	chr1:1284346-1284642(-)$1	1	115	148	13.2955
((((((((..(((((.....)))))....))))	chr1:155243030-155243289(-)$1	1	148	181	14.4246
((((.(.(.(((.(((....))).))).).).)	chrX:41193682-41193964(+)$1	1	98	131	10.2918
.(((.(((((.(((((...)))))))))).)))	chr16:28875558-28875843(+)$1	1	119	152	12.5641
(((((..((..(((((...)))))..))..)))	chr11:65315625-65315972(-)$1	1	14	47	12.8170
(((((((.((((((((....).)))).)).).)	chr3:33481570-33481867(-)$1	1	167	200	10.4960
..(((((((..(((((......))))).)))))	chr7:150066574-150066871(+)$1	1	137	170	11.4968
(...(((((..((((......))))..))))).	chr19:12811662-12811916(-)$1	1	22	55	11.3944
((((.((((..(((((....))))).)))))))	chr11:47488487-47488819(-)$1	1	85	118	14.5086
((((((..((.(((((....))))))).)))))	chr6:42984812-42985089(+)$1	1	238	271	13.8428
(((((.(((..(((((...))))))))))))))	chr7:129710470-129710785(+)$1	1	177	210	14.0962
....((((((..((((....))))...))))))	chr7:128828857-128829127(+)$1	1	118	151	11.3582
..)))(((((.(((((....)))))...)))))	chr14:24615711-24616009(-)$1	1	236	269	14.5114
.(((((.....(((((...))))))))))))))	chr16:30935585-30935817(+)$1	1	74	107	13.8426
(.((((.((.(((((.....)))))...)).))	chr7:150756628-150756906(+)$1	1	163	196	13.2082
.((((.(((..(((((....)))))))).))))	chr1:151137638-151138064(-)$1	1	340	373	14.6338
.((((((....(((((....)))))..))))))	chr19:12811716-12811956(-)$1	1	134	167	15.2103
(.(((((((.((((((....))))).).)))))	chr2:32235519-32235790(-)$1	1	57	90	15.1963
((((((.((.(((((......))))).)).)))	chr17:48459982-48460270(-)$1	1	147	180	13.3048
..(((((((..(((((....)))))....))))	chr16:2110690-2110958(+)$1	1	64	97	16.2012
.(...(((((..((((....))))..)))))..	chr19:10679420-10679722(-)$1	1	232	265	10.9414
.((((((((.(((((.....)))))))....))	chr15:79165185-79165478(+)$1	1	30	63	12.9080
(.(((((.((.(((((....))))))).)))))	chrX:20284754-20284966(-)$1	1	34	67	14.5669
((((.(....(((((.....)))))...).)))	chr6:31619947-31620212(-)$1	1	1	34	15.6074
(..((.((.(.(((((...))))).).)).)).	chr9:126030574-126030849(-)$1	1	162	195	12.4355
(((.(((((((.((((....)))).))))))).	chr11:64950033-64950342(+)$1	1	164	197	10.7383
(.((((((.((.((((....)))).)).)))..	chr2:190648765-190649105(-)$1	1	31	64	10.2798
..(((((.(.((((((...))))).).).))))	chr5:179248516-179248777(+)$1	1	107	140	12.8884
(((..((((..(((((.....))))))))))))	chr2:46926278-46926585(+)$1	1	214	247	12.1675
((((((.(((.(((((....))))))))..)))	chr8:145650874-145651142(-)$1	1	160	193	13.9927
(.(((.((((((((......))))).))).)))	chr10:104503704-104503995(+)$1	1	207	240	12.9311
((.((((...(((((......))))).)))).)	chr6:31915081-31915343(+)$1	1	41	74	12.5359
...(((((..(((((......)))))....)))	chr10:21823290-21823528(+)$1	1	165	198	14.7077
(.(((((....((((......))))..).))))	chr16:27325107-27325450(+)$1	1	97	130	11.6360
((((..(....(((((....)))))....)..)	chr7:1577498-1577746(+)$1	1	53	86	15.6707
((....(((.(((((.....))))).))).)))	chr12:53574414-53574714(+)$1	1	255	288	13.0778
.(((((.....(((((.....)))))....)))	chr12:122239794-122240070(-)$1	1	227	260	14.1092
...((((((.(((((.....))))).))).)))	chr11:47199178-47199455(-)$1	1	107	140	13.7933
(((((...((.(((((....)))))))..))))	chr9:123342168-123342463(-)$1	1	219	252	13.7015

#PSSM
e : 0.19	[ : 0.13	f : 0.11	" : 0.07	c : 0.07	b : 0.05	d : 0.05	i : 0.03	g : 0.03	: : 0.03	a : 0.03	# : 0.03	& : 0.01	4 : 0.01	F : 0.01	! : 0.01	
e : 0.21	f : 0.15	[ : 0.15	d : 0.07	" : 0.07	c : 0.05	i : 0.03	g : 0.03	a : 0.03	: : 0.03	# : 0.03	4 : 0.01	! : 0.01	b : 0.01	
e : 0.27	f : 0.15	c : 0.11	g : 0.09	d : 0.09	" : 0.07	# : 0.05	i : 0.03	[ : 0.03	b : 0.01	! : 0.01	
e : 0.29	f : 0.15	d : 0.13	c : 0.11	g : 0.09	b : 0.03	" : 0.03	# : 0.03	: : 0.01	i : 0.01	[ : 0.01	! : 0.01	
e : 0.21	[ : 0.15	f : 0.13	d : 0.13	g : 0.11	c : 0.09	! : 0.03	: : 0.01	i : 0.01	" : 0.01	b : 0.01	# : 0.01	
e : 0.23	c : 0.11	[ : 0.11	f : 0.11	g : 0.11	d : 0.11	a : 0.05	! : 0.03	b : 0.01	i : 0.01	# : 0.01	" : 0.01	
c : 0.21	e : 0.15	[ : 0.11	g : 0.09	d : 0.07	! : 0.05	a : 0.05	f : 0.05	b : 0.03	" : 0.03	$ : 0.03	i : 0.01	# : 0.01	
c : 0.23	b : 0.11	[ : 0.09	e : 0.09	g : 0.07	# : 0.07	! : 0.05	d : 0.05	" : 0.05	a : 0.03	$ : 0.03	i : 0.01	f : 0.01	
b : 0.19	c : 0.15	# : 0.11	! : 0.07	e : 0.07	g : 0.07	" : 0.05	d : 0.05	a : 0.05	[ : 0.05	$ : 0.03	f : 0.01	
! : 0.23	[ : 0.19	b : 0.13	# : 0.11	e : 0.07	" : 0.03	a : 0.03	g : 0.03	c : 0.03	$ : 0.03	d : 0.01	f : 0.01	
! : 0.21	e : 0.21	[ : 0.17	# : 0.09	b : 0.05	a : 0.05	" : 0.03	g : 0.03	$ : 0.03	f : 0.01	d : 0.01	c : 0.01	
e : 0.66	[ : 0.05	d : 0.05	# : 0.03	a : 0.03	! : 0.03	f : 0.01	b : 0.01	" : 0.01	g : 0.01	c : 0.01	
e : 0.72	d : 0.19	f : 0.01	" : 0.01	g : 0.01	[ : 0.01	
e : 0.72	d : 0.19	c : 0.03	f : 0.01	g : 0.01	
e : 0.70	d : 0.19	c : 0.03	f : 0.01	g : 0.01	o : 0.01	
e : 0.50	d : 0.13	n : 0.13	o : 0.11	c : 0.03	f : 0.01	g : 0.01	a : 0.01	
m : 0.49	n : 0.17	l : 0.13	o : 0.13	e : 0.05	
m : 0.49	l : 0.19	n : 0.17	o : 0.13	
m : 0.49	l : 0.19	n : 0.17	o : 0.13	
m : 0.49	n : 0.17	o : 0.13	e : 0.11	l : 0.05	g : 0.01	
e : 0.60	d : 0.13	o : 0.11	c : 0.03	n : 0.03	f : 0.01	g : 0.01	a : 0.01	
e : 0.70	d : 0.17	c : 0.03	f : 0.01	g : 0.01	] : 0.01	o : 0.01	
e : 0.72	d : 0.19	c : 0.03	f : 0.01	g : 0.01	
e : 0.72	d : 0.19	f : 0.01	2 : 0.01	g : 0.01	] : 0.01	
e : 0.64	] : 0.13	2 : 0.05	d : 0.05	c : 0.03	f : 0.01	g : 0.01	3 : 0.01	
e : 0.15	2 : 0.13	] : 0.13	a : 0.13	b : 0.11	3 : 0.09	c : 0.07	4 : 0.05	g : 0.03	f : 0.01	d : 0.01	
] : 0.17	b : 0.17	c : 0.13	2 : 0.11	3 : 0.11	4 : 0.09	e : 0.07	d : 0.03	f : 0.01	a : 0.01	g : 0.01	
c : 0.17	b : 0.13	4 : 0.13	] : 0.11	3 : 0.09	e : 0.09	d : 0.07	f : 0.05	2 : 0.03	a : 0.03	g : 0.01	
c : 0.15	e : 0.15	4 : 0.13	b : 0.09	] : 0.07	a : 0.07	f : 0.07	d : 0.07	2 : 0.05	g : 0.05	3 : 0.01	
] : 0.23	e : 0.17	c : 0.11	d : 0.11	f : 0.09	4 : 0.07	g : 0.07	2 : 0.03	i : 0.01	b : 0.01	a : 0.01	
e : 0.31	d : 0.13	f : 0.11	c : 0.11	g : 0.09	] : 0.05	a : 0.05	4 : 0.03	i : 0.01	b : 0.01	2 : 0.01	
e : 0.29	f : 0.15	g : 0.11	c : 0.11	d : 0.11	] : 0.09	2 : 0.03	i : 0.01	3 : 0.01	b : 0.01	
e : 0.29	f : 0.15	d : 0.13	g : 0.11	c : 0.11	2 : 0.07	3 : 0.03	a : 0.01	i : 0.01	b : 0.01	

#score	666.1179835490435
#seq	51
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_transcript_m2_run2.txt

#BEAR
ddd[ccc[bbqqqqqqqqbb]ccc22d	chr8:25159786-25160071(+)$1	285	85	112	15.7725
ciiiiiiiiiqqqqqqqqiiiiiiiii	chr19:7677044-7677276(+)$1	232	119	146	17.1625
ggggffffffqqqqqqqqffffff22g	chr10:118674848-118675090(-)$1	242	79	106	15.3347
dd!!dddd[aqqqqqqqqa]dddd22d	chr17:47783528-47783785(-)$1	257	193	220	15.9633
iiiiiii[bbqqqqqqqqbbiiiiiii	chr7:2108852-2109074(-)$1	222	41	68	16.7429
dddgggggggqqqqqqqqggggggg22	chr1:156703114-156703449(+)$1	335	208	235	16.2223
cca!!eeeeeqqqqqqqqeeeee22a]	chr12:125450112-125450416(-)$1	304	207	234	16.3544
iidddd[cccqqqqqqqqccc22dddd	chr3:50145566-50145777(+)$1	211	111	138	16.2096
cc!!bb[cccqqqqqqqqccc]bb22c	chr1:39751173-39751414(+)$1	241	166	193	16.9672
d[ccc[ddddqqqqqqqqdddd]ccc2	chr20:407964-408231(+)$1	267	101	128	16.3505
!!ccc[ddddqqqqqqqqdddd]ccc2	chr22:41723111-41723363(+)$1	252	93	120	16.4966
eee!!eeeeeqqqqqqqqeeeee4444	chr1:8601268-8601475(-)$1	207	34	61	16.2418
ggg[a!!cccqqqqqqqqccc22a]gg	chr3:49457614-49457872(-)$1	258	138	165	18.0759
[bb!!eeeeeqqqqqqqqeeeee22bb	chr7:900974-901199(+)$1	225	160	187	15.2905
=======[bbqqqqqqqqbb22=====	chr6:30679088-30679311(-)$1	223	41	68	16.6866
d[bb[bbcccqqqqqqqqccc]bbbb]	chr17:40666305-40666568(+)$1	263	17	44	15.6219
ffffffff[aqqqqqqqqaffffff]f	chr1:110171883-110172151(+)$1	268	145	172	14.9087
hhhhhaacccqqqqqqqqccc]a]a]h	chr2:234354166-234354416(+)$1	250	158	185	17.0710
eeeea!!cccqqqqqqqqccc4444a]	chr2:242438651-242438890(-)$1	239	80	107	17.8284
e[a!!ccc[aqqqqqqqqa]ccc22ae	chr1:17942561-17942797(+)$1	236	186	213	17.2520
b[eeeee[bbqqqqqqqqbb333eeee	chr16:15229085-15229362(-)$1	277	123	150	15.4131
:ggggggg[aqqqqqqqqa]ggggggg	chr2:220479783-220480014(+)$1	231	178	205	15.8997
gccc[eeeeeqqqqqqqqeeeee]ccc	chr17:5336888-5337140(-)$1	252	183	210	15.9627
cc!!ccccccqqqqqqqqccc]ccc22	chr6:131277253-131277512(-)$1	259	212	239	17.6436
cc!!a[ddddqqqqqqqqdddda22cc	chr16:70814654-70814916(-)$1	262	151	178	16.7707
iiiiii[cccqqqqqqqqccc]iiiii	chr22:37904555-37904789(-)$1	234	140	167	18.2127
gggggggcccqqqqqqqqccc]ggggg	chr12:6574913-6575255(-)$1	342	207	234	17.6942
!!ccc!!cccqqqqqqqqccc]ccc22	chr12:51019675-51019931(+)$1	256	108	135	17.8812
ggbb####bbqqqqqqqqbb4444bb]	chr14:24031107-24031350(-)$1	243	153	180	15.4106
[eeeee[cccqqqqqqqqccceeeee]	chr11:63713251-63713527(+)$1	276	104	131	16.7212
hhhhhhddddqqqqqqqqdddd4444h	chr14:21462662-21462872(+)$1	210	52	79	15.8120
:iiiiiiiiiqqqqqqqqiiiiiiiii	chr20:390433-390667(+)$1	234	140	167	16.1949
[eeeeeddddqqqqqqqqdddd4444e	chr2:192226966-192227198(+)$1	232	166	193	16.0555
iiiii!!cccqqqqqqqqccc22iiii	chr1:109825039-109825289(-)$1	250	131	158	18.0712
eeeee[ddddqqqqqqqqdddd22eee	chr19:6222109-6222348(-)$1	239	73	100	15.5462
a[hhhhhhhhqqqqqqqqhhhhhhhh]	chr3:183873464-183873714(+)$1	250	27	54	14.8656
hhhhh!!cccqqqqqqqqccc]hhhhh	chr16:70820016-70820314(-)$1	298	263	290	16.6335
g$$$$$ddddqqqqqqqqdddd4444g	chr19:54647646-54647962(+)$1	316	235	262	15.8065
dd"""ccc[aqqqqqqqqa]ccc4444	chr19:10226056-10226294(-)$1	238	135	162	17.1972
eeeee[bb[aqqqqqqqqabbeeeee:	chr12:57498903-57499159(-)$1	256	43	70	14.1141
b[hhhhhhhhqqqqqqqqhhhhhhhh]	chr9:6849405-6849688(+)$1	283	206	233	14.6542
eeee!!ddddqqqqqqqqdddd]eeee	chr11:592461-592704(+)$1	243	25	52	15.9118
dddd[eeeeeqqqqqqqqeeeeedddd	chr5:73936072-73936341(-)$1	269	67	94	14.8104
ddccc[ddddqqqqqqqqdddd]ccc]	chr21:46912352-46912575(+)$1	223	6	33	16.3543
fffff!!cccqqqqqqqqccc22ffff	chr22:42294582-42294821(+)$1	239	49	76	16.3095
iii!!eeeeeqqqqqqqqeeeee]iii	chr11:67810008-67810264(+)$1	256	101	128	16.6167
!bb[dddd[aqqqqqqqqa]dddd]bb	chr7:47463598-47463802(-)$1	204	20	47	15.3541
$ccc"""cccqqqqqqqqccc333ccc	chr1:33741919-33742188(+)$1	269	36	63	17.8248
$$$$$cccbbqqqqqqqqbb4444ccc	chr12:53994628-53994894(-)$1	266	80	107	15.4852
==========qqqqqqqq=========	chr1:186362981-186363244(+)$1	263	169	196	17.5818
dddd[a[cccqqqqqqqqccc]a]ddd	chr9:117050925-117051135(+)$1	210	175	202	17.0233
eee[ffffffqqqqqqqqffffff]ee	chr12:56817480-56817730(-)$1	250	70	97	15.1320
dddgggggggqqqqqqqqggggggg]d	chr11:64882084-64882299(+)$1	215	102	129	16.2724
dd$$$$$cccqqqqqqqqccc]dddd:	chr16:89977387-89977590(+)$1	203	46	73	15.1032
b"""bb[cccqqqqqqqqccc]bb]bb	chr20:409494-409741(+)$1	247	163	190	16.1197
!!a"""cccaqqqqqqqqa]ccc333a	chr17:17722572-17722854(-)$1	282	243	270	18.1146
ccc[ddddbbqqqqqqqqbb]dddd]c	chr5:140023109-140023362(+)$1	253	185	212	15.4617
(gggggggbbqqqqqqqqbb]gggggg	chr19:55857767-55858025(+)$1	258	169	196	15.5642
fff[bb[cccqqqqqqqqcccbbffff	chr17:37420446-37420732(-)$1	286	176	203	15.5401
ccc[ffffffqqqqqqqqffffff]cc	chr16:81697778-81698057(+)$1	279	1	28	15.5263
[bb[a[acccqqqqqqqqccc]a]a]b	chr8:144695640-144695902(-)$1	262	56	83	17.4928

#otherMatches

#Seq PSSM
GCGUCAGCCUUGUGUGCCAGAUUGUCC	chr8:25159786-25160071(+)$1	285	85	112	15.7725
CCUGAGCUCGGAGAUGAGUGAGCUCAG	chr19:7677044-7677276(+)$1	232	119	146	17.1625
UGUGUUCUUUGAACAGCUGAAGAAGUC	chr10:118674848-118675090(-)$1	242	79	106	15.3347
CUACAGUUUGUCAACUACCCAACUCAG	chr17:47783528-47783785(-)$1	257	193	220	15.9633
GGCUUGGUGGGGUGGUCACCCCAGGCU	chr7:2108852-2109074(-)$1	222	41	68	16.7429
CCUUCCUGCGACCUGGACUGCAGGAGC	chr1:156703114-156703449(+)$1	335	208	235	16.2223
GGCCCGAGCACCGAUUCCUGCUCAUGU	chr12:125450112-125450416(-)$1	304	207	234	16.3544
AUCAGCAGUUUUAUCAACAACAAGCUG	chr3:50145566-50145777(+)$1	211	111	138	16.2096
AGGAGUGUGAAGGUCUCAUCAGGCAGC	chr1:39751173-39751414(+)$1	241	166	193	16.9672
GCUUCUUUGAGGAUGAUGUCAAUGAGU	chr20:407964-408231(+)$1	267	101	128	16.3505
GGCAGGGCCUGUAUGAGAAGGCGCUGG	chr22:41723111-41723363(+)$1	252	93	120	16.4966
CUCCAGUUUUGGUUAGCAAAAGCAGUU	chr1:8601268-8601475(-)$1	207	34	61	16.2418
AGAUGACUUGAUUGUAACCAAUACUUC	chr3:49457614-49457872(-)$1	258	138	165	18.0759
AUGAUCACCUGUUAGCAGGGGUGUGCA	chr7:900974-901199(+)$1	225	160	187	15.2905
AUGGAGGAUGAACCUACCCAGGCCUUC	chr6:30679088-30679311(-)$1	223	41	68	16.6866
UUGGACCAUGGUGAUCCACAUCGGCCU	chr17:40666305-40666568(+)$1	263	17	44	15.6219
GUGGGUGGAGGAGGACAACCCACCCUA	chr1:110171883-110172151(+)$1	268	145	172	14.9087
CUGGGGCUCAGCCUGCGAUGACGACAC	chr2:234354166-234354416(+)$1	250	158	185	17.0710
GGAGCAGGGUGACGUGAAGCUGGCGGA	chr2:242438651-242438890(-)$1	239	80	107	17.8284
UCGGGGAGGGUGGGAUUUUGCUUUACA	chr1:17942561-17942797(+)$1	236	186	213	17.2520
CACGGUCACCAUUCCACGGGAACGGCU	chr16:15229085-15229362(-)$1	277	123	150	15.4131
CCUGCUGUGCGUGUCAGGGAGCAGCAG	chr2:220479783-220480014(+)$1	231	178	205	15.8997
CCCCUGGGGAACAGUGUGUCCCUUGGG	chr17:5336888-5337140(-)$1	252	183	210	15.9627
AACAGGUCUUAGAUAAAGAGGAACCCC	chr6:131277253-131277512(-)$1	259	212	239	17.6436
CUGAGACCUGGGCAGAGGCAGGCAGAG	chr16:70814654-70814916(-)$1	262	151	178	16.7707
UGCUGGACAUCCUAGAGCAUGACUGGC	chr22:37904555-37904789(-)$1	234	140	167	18.2127
CUGCCAAGCUAAAGAGGAAGUAUUGGU	chr12:6574913-6575255(-)$1	342	207	234	17.6942
AAAGAAAAGGUCCAAACUCCUAUCUCC	chr12:51019675-51019931(+)$1	256	108	135	17.8812
ACUCUUCCGGAAAUACGACCACAUGAG	chr14:24031107-24031350(-)$1	243	153	180	15.4106
GGAGCGAGCAGCCAUGGAUGCCGUUUG	chr11:63713251-63713527(+)$1	276	104	131	16.7212
UGGGGAGCCUUAUAUUCCAGGUGUCUU	chr14:21462662-21462872(+)$1	210	52	79	15.8120
ACAGGUGGCAAUGAAGUGUGCCAUCUG	chr20:390433-390667(+)$1	234	140	167	16.1949
AUACCACUGCAUUGCUCAGCGGGAGCU	chr2:192226966-192227198(+)$1	232	166	193	16.0555
GGCUGUCACCAUCUGACAGGUACCAGC	chr1:109825039-109825289(-)$1	250	131	158	18.0712
UCCUUCUCGGACAAGAAGCCGGCCAAG	chr19:6222109-6222348(-)$1	239	73	100	15.5462
GCCCGCCGAGCGCGUCACCUUGGCGGA	chr3:183873464-183873714(+)$1	250	27	54	14.8656
GCCUUCCCUGUCAAGACCCAGUAGGGC	chr16:70820016-70820314(-)$1	298	263	290	16.6335
UAGAGAAGAGGAGGUGAACUCUGAGGA	chr19:54647646-54647962(+)$1	316	235	262	15.8065
GCCAAGUAAGACUCCAUCCCUGCCCCA	chr19:10226056-10226294(-)$1	238	135	162	17.1972
CCUGGUGGAGAAGCAGCCCCCCCAGGU	chr12:57498903-57499159(-)$1	256	43	70	14.1141
GGCAUGUGGAAGACCACGUUUGCAUGG	chr9:6849405-6849688(+)$1	283	206	233	14.6542
UGCGUUUCACGCUGGGAAGUGACUGCG	chr11:592461-592704(+)$1	243	25	52	15.9118
GGGCGCAGUCCUCUCCCCGGCUGGCCC	chr5:73936072-73936341(-)$1	269	67	94	14.8104
UGGUGUUUUGUUGAUCUGUAAGUCGCU	chr21:46912352-46912575(+)$1	223	6	33	16.3543
UUUGGUGCUGUUCUCCUCUAGGUCCAG	chr22:42294582-42294821(+)$1	239	49	76	16.3095
CCUUCCUGCAGGAGGAGGUGCGGCGGG	chr11:67810008-67810264(+)$1	256	101	128	16.6167
CGCCGACCAGGCCCUUGACAGGUUUGC	chr7:47463598-47463802(-)$1	204	20	47	15.3541
ACCUGGUUCUGAUUAACAAGAUCAAGG	chr1:33741919-33742188(+)$1	269	36	63	17.8248
CCUCCUCAGCUCCUCUCUGCUAUAUGA	chr12:53994628-53994894(-)$1	266	80	107	15.4852
aauauuuuaaaauaacacuuaaaauau	chr1:186362981-186363244(+)$1	263	169	196	17.5818
GUCUAGAAAGAACAAGAACUUCCCAGG	chr9:117050925-117051135(+)$1	210	175	202	17.0233
AGAUGUGUUUGGCUCUCAAGACAUUUC	chr12:56817480-56817730(-)$1	250	70	97	15.1320
CCUCAUCAACCUGGCCCUGUUGAUGAA	chr11:64882084-64882299(+)$1	215	102	129	16.2724
GCCCCUAGUCCCAGCACAGACAGCCCC	chr16:89977387-89977590(+)$1	203	46	73	15.1032
GACGGCUGCGACUGGAUCCGCUGCACC	chr20:409494-409741(+)$1	247	163	190	16.1197
AAGGGAGUGGGGUCUACACACACACAC	chr17:17722572-17722854(-)$1	282	243	270	18.1146
GUUUCUUGAUACUCUGGAAUGCAGGUA	chr5:140023109-140023362(+)$1	253	185	212	15.4617
CCAGCUGCGUGAGACCAAGCGGCGGCU	chr19:55857767-55858025(+)$1	258	169	196	15.5642
AUUGAGCUGGACAACUGCCCACUAAUC	chr17:37420446-37420732(-)$1	286	176	203	15.5401
agcugggcugacuguccccagcccugc	chr16:81697778-81698057(+)$1	279	1	28	15.5263
GGGGUGGGAGCAGGAAUAUUCAUGGGC	chr8:144695640-144695902(-)$1	262	56	83	17.4928

#DB
(((.(((.((........)).)))..)	chr8:25159786-25160071(+)$1	1	85	112	15.7725
)(((((((((........)))))))))	chr19:7677044-7677276(+)$1	1	119	146	17.1625
((((((((((........))))))..)	chr10:118674848-118675090(-)$1	1	79	106	15.3347
((..((((.(........).))))..)	chr17:47783528-47783785(-)$1	1	193	220	15.9633
(((((((.((........)))))))))	chr7:2108852-2109074(-)$1	1	41	68	16.7429
((((((((((........)))))))..	chr1:156703114-156703449(+)$1	1	208	235	16.2223
(((..(((((........)))))..).	chr12:125450112-125450416(-)$1	1	207	234	16.3544
))((((.(((........)))..))))	chr3:50145566-50145777(+)$1	1	111	138	16.2096
((..((.(((........))).))..)	chr1:39751173-39751414(+)$1	1	166	193	16.9672
(.(((.((((........)))).))).	chr20:407964-408231(+)$1	1	101	128	16.3505
..(((.((((........)))).))).	chr22:41723111-41723363(+)$1	1	93	120	16.4966
(((..(((((........)))))....	chr1:8601268-8601475(-)$1	1	34	61	16.2418
(((.(..(((........)))..).))	chr3:49457614-49457872(-)$1	1	138	165	18.0759
.((..(((((........)))))..))	chr7:900974-901199(+)$1	1	160	187	15.2905
(((((((.((........))..)))))	chr6:30679088-30679311(-)$1	1	41	68	16.6866
(.((.(((((........))).)))).	chr17:40666305-40666568(+)$1	1	17	44	15.6219
((((((((.(........))))))).)	chr1:110171883-110172151(+)$1	1	145	172	14.9087
((((((((((........))).).).)	chr2:234354166-234354416(+)$1	1	158	185	17.0710
(((((..(((........)))....).	chr2:242438651-242438890(-)$1	1	80	107	17.8284
(.(..(((.(........).)))..))	chr1:17942561-17942797(+)$1	1	186	213	17.2520
(.(((((.((........))...))))	chr16:15229085-15229362(-)$1	1	123	150	15.4131
.(((((((.(........).)))))))	chr2:220479783-220480014(+)$1	1	178	205	15.8997
)(((.(((((........))))).)))	chr17:5336888-5337140(-)$1	1	183	210	15.9627
((..((((((........))).)))..	chr6:131277253-131277512(-)$1	1	212	239	17.6436
((..(.((((........)))))..))	chr16:70814654-70814916(-)$1	1	151	178	16.7707
((((((.(((........))).)))))	chr22:37904555-37904789(-)$1	1	140	167	18.2127
((((((((((........))).)))))	chr12:6574913-6575255(-)$1	1	207	234	17.6942
..(((..(((........))).)))..	chr12:51019675-51019931(+)$1	1	108	135	17.8812
((((....((........))....)).	chr14:24031107-24031350(-)$1	1	153	180	15.4106
.(((((.(((........)))))))).	chr11:63713251-63713527(+)$1	1	104	131	16.7212
((((((((((........))))....)	chr14:21462662-21462872(+)$1	1	52	79	15.8120
.(((((((((........)))))))))	chr20:390433-390667(+)$1	1	140	167	16.1949
.(((((((((........))))....)	chr2:192226966-192227198(+)$1	1	166	193	16.0555
(((((..(((........)))..))))	chr1:109825039-109825289(-)$1	1	131	158	18.0712
(((((.((((........))))..)))	chr19:6222109-6222348(-)$1	1	73	100	15.5462
(.((((((((........)))))))).	chr3:183873464-183873714(+)$1	1	27	54	14.8656
(((((..(((........))).)))))	chr16:70820016-70820314(-)$1	1	263	290	16.6335
(.....((((........))))....)	chr19:54647646-54647962(+)$1	1	235	262	15.8065
((...(((.(........).)))....	chr19:10226056-10226294(-)$1	1	135	162	17.1972
(((((.((.(........)))))))).	chr12:57498903-57499159(-)$1	1	43	70	14.1141
(.((((((((........)))))))).	chr9:6849405-6849688(+)$1	1	206	233	14.6542
((((..((((........)))).))))	chr11:592461-592704(+)$1	1	25	52	15.9118
((((.(((((........)))))))))	chr5:73936072-73936341(-)$1	1	67	94	14.8104
(((((.((((........)))).))).	chr21:46912352-46912575(+)$1	1	6	33	16.3543
(((((..(((........)))..))))	chr22:42294582-42294821(+)$1	1	49	76	16.3095
(((..(((((........))))).)))	chr11:67810008-67810264(+)$1	1	101	128	16.6167
.((.((((.(........).)))).))	chr7:47463598-47463802(-)$1	1	20	47	15.3541
.(((...(((........)))...)))	chr1:33741919-33742188(+)$1	1	36	63	17.8248
.....(((((........))....)))	chr12:53994628-53994894(-)$1	1	80	107	15.4852
((((((((((........)))))))))	chr1:186362981-186363244(+)$1	1	169	196	17.5818
((((.(.(((........))).).)))	chr9:117050925-117051135(+)$1	1	175	202	17.0233
(((.((((((........)))))).))	chr12:56817480-56817730(-)$1	1	70	97	15.1320
((((((((((........))))))).)	chr11:64882084-64882299(+)$1	1	102	129	16.2724
((.....(((........))).)))).	chr16:89977387-89977590(+)$1	1	46	73	15.1032
(...((.(((........))).)).))	chr20:409494-409741(+)$1	1	163	190	16.1197
..(...((((........).)))...)	chr17:17722572-17722854(-)$1	1	243	270	18.1146
(((.((((((........)).)))).)	chr5:140023109-140023362(+)$1	1	185	212	15.4617
.(((((((((........)).))))))	chr19:55857767-55858025(+)$1	1	169	196	15.5642
(((.((.(((........)))))))))	chr17:37420446-37420732(-)$1	1	176	203	15.5401
(((.((((((........)))))).))	chr16:81697778-81698057(+)$1	1	1	28	15.5263
.((.(.((((........))).).).)	chr8:144695640-144695902(-)$1	1	56	83	17.4928

#PSSM
d : 0.18	c : 0.11	e : 0.11	g : 0.09	i : 0.08	! : 0.06	[ : 0.06	f : 0.04	h : 0.04	b : 0.04	= : 0.03	: : 0.03	$ : 0.03	a : 0.01	( : 0.01	
d : 0.14	c : 0.13	e : 0.13	i : 0.11	g : 0.09	[ : 0.09	! : 0.04	b : 0.04	f : 0.04	h : 0.04	= : 0.03	$ : 0.03	" : 0.01	
e : 0.14	c : 0.13	d : 0.09	i : 0.09	g : 0.08	b : 0.08	h : 0.08	! : 0.06	a : 0.04	f : 0.04	$ : 0.04	= : 0.03	" : 0.03	
! : 0.14	[ : 0.13	e : 0.11	g : 0.09	c : 0.09	i : 0.08	h : 0.08	d : 0.04	$ : 0.04	" : 0.04	= : 0.03	b : 0.03	f : 0.03	
c : 0.09	! : 0.09	i : 0.08	f : 0.08	g : 0.08	h : 0.08	e : 0.08	d : 0.06	a : 0.06	[ : 0.06	b : 0.04	$ : 0.04	" : 0.04	= : 0.03	# : 0.01	
e : 0.14	[ : 0.11	! : 0.11	c : 0.08	g : 0.08	i : 0.06	f : 0.06	d : 0.06	b : 0.06	h : 0.04	= : 0.03	a : 0.03	$ : 0.03	" : 0.03	# : 0.01	
d : 0.19	e : 0.11	[ : 0.11	c : 0.09	! : 0.09	g : 0.08	f : 0.06	i : 0.04	= : 0.03	b : 0.03	a : 0.03	h : 0.03	# : 0.01	" : 0.01	$ : 0.01	
c : 0.39	d : 0.19	e : 0.09	[ : 0.06	f : 0.06	g : 0.06	i : 0.03	h : 0.03	# : 0.01	b : 0.01	= : 0.01	
c : 0.34	d : 0.14	b : 0.13	[ : 0.11	e : 0.09	f : 0.04	i : 0.03	g : 0.03	h : 0.03	= : 0.01	
c : 0.32	d : 0.14	b : 0.13	a : 0.13	e : 0.09	f : 0.04	i : 0.03	g : 0.03	h : 0.03	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.32	d : 0.14	b : 0.13	a : 0.13	e : 0.09	f : 0.04	i : 0.03	g : 0.03	h : 0.03	= : 0.01	
c : 0.32	b : 0.14	d : 0.14	] : 0.09	e : 0.09	f : 0.06	i : 0.03	g : 0.03	h : 0.03	= : 0.01	
c : 0.37	d : 0.18	e : 0.09	f : 0.06	] : 0.04	i : 0.04	g : 0.04	4 : 0.03	h : 0.03	2 : 0.01	3 : 0.01	b : 0.01	= : 0.01	
d : 0.19	] : 0.19	e : 0.13	2 : 0.08	c : 0.06	f : 0.06	g : 0.06	i : 0.04	4 : 0.04	3 : 0.03	h : 0.03	= : 0.01	b : 0.01	
e : 0.13	c : 0.09	4 : 0.09	g : 0.08	2 : 0.08	i : 0.06	f : 0.06	d : 0.06	b : 0.06	] : 0.06	a : 0.06	h : 0.04	= : 0.03	3 : 0.03	
4 : 0.13	c : 0.09	f : 0.09	d : 0.09	i : 0.08	g : 0.08	2 : 0.08	] : 0.08	e : 0.06	b : 0.04	h : 0.04	= : 0.03	3 : 0.03	a : 0.01	
2 : 0.13	c : 0.13	i : 0.09	4 : 0.09	g : 0.08	d : 0.08	] : 0.08	e : 0.08	f : 0.04	h : 0.04	= : 0.03	b : 0.03	a : 0.03	3 : 0.01	
c : 0.13	2 : 0.11	i : 0.09	e : 0.09	4 : 0.08	b : 0.08	] : 0.08	d : 0.06	g : 0.06	a : 0.04	h : 0.04	= : 0.03	f : 0.03	3 : 0.01	
] : 0.13	c : 0.11	d : 0.09	i : 0.09	g : 0.09	e : 0.09	2 : 0.08	b : 0.06	f : 0.04	h : 0.04	4 : 0.03	= : 0.03	: : 0.03	a : 0.01	

#score	994.7157903171578
#seq	61
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_CDS_m2_run2.txt

#BEAR
d!!ffffff!!bb!!cccooooooccc22bbffffff]dd	chr9:140005231-140005471(-)$1	240	158	198	14.9139
b[a!!ggggggg"""cccmmmmcccggggggg22a]bb]d	chr6:133138530-133138764(+)$1	234	47	87	13.3299
eee!!eeeee[bb!!a!!annnnna22a22bb]eeeee44	chr19:54711297-54711536(+)$1	239	112	152	12.8720
eeccc"""eeeee[ccccccmmmmccc]ccc]eeeee444	chr7:99751437-99751676(+)$1	239	137	177	12.1849
ff[ccc[eeeee"""cccnnnnnccc4444eeeee]ccc2	chr19:8386439-8386653(+)$1	214	45	85	13.9091
"""a!!ggggggg!!a[bbmmmmbb]a22ggggggg22a2	chr5:149823741-149823976(-)$1	235	70	110	12.6535
eeee[ffffff####cccrrrrrrrrrcccffffff]eee	chr11:64012314-64012534(-)$1	220	23	63	10.8596
========!!bb!!a[bbmmmmbba22bb333========	chr20:60962867-60963072(+)$1	205	7	47	12.2147
ccc[bb[a!!bb[eeeeeooooooeeeee]bb22a]bbcc	chr19:1440123-1440348(+)$1	225	94	134	12.5110
========[ccc####cccnnnnnccc22ccc]=======	chr14:20925556-20925826(+)$1	270	9	49	17.0346
iiiiiiiii!!bb[ddddoooooodddd22bb22iiiiii	chr16:31539759-31539987(+)$1	228	59	99	15.5484
dddd[bba"""gggggggooooooggggggg4444a]bb]	chr11:65421995-65422225(-)$1	230	78	118	13.4009
Gccc"""ccc[a$$$$$cccmmmmccc22a]ccc333ccc	chr1:46654481-46654731(-)$1	250	186	226	13.2698
==========$$$$$ddddllldddd4444==========	chr12:53691533-53691767(+)$1	234	35	75	14.5459
e!!bb"""dddd####bb!!aooooooa22bb333ddddb	chr7:100486137-100486375(+)$1	238	51	91	12.4686
''eeeee!!a[ccc[cccooooooccc]ccc]a22eeeee	chr17:34171863-34172132(+)$1	269	98	138	13.6477
ddddffffff[ccc[cccooooooccc]cccffffff]dd	chr19:39924209-39924468(-)$1	259	147	187	13.4161
ffff"""ggggggg[a[aooooooa]a]gggggggfffff	chr3:12880854-12881071(-)$1	217	165	205	13.7793
eeccc[ffffff"""cccooooooccc22ffffffccc::	chr1:155225929-155226183(-)$1	254	81	121	13.7274
####ccc"""a!!eeeeennnnneeeee22a4444ccc33	chr19:49949539-49949782(-)$1	243	132	172	13.2542
ddddddd[ccc!!bb!!ddddllldddd22bb22cccddd	chr8:145135045-145135320(+)$1	275	83	123	10.9421
eee[eeeee####eeeeeooooooeeeee4444eeeeeee	chr9:124906378-124906636(-)$1	258	211	251	13.0623
dddd!!aeeeee"""cccooooooccc]eeeee]a22ddd	chr6:5109507-5109802(-)$1	295	214	254	14.9332
b[ffffff!!eeeee[cccnnnnnccc]eeeee4444fff	chr7:127731799-127732031(+)$1	232	173	213	11.8050
b[a!!ggggggg"""cccmmmmcccggggggg22a]bb]d	chr6:133138524-133138727(+)$1	203	53	93	13.3299
b[hhhhhhhhccc[ddddoooooodddd22ccc]hhhhhh	chrX:48463305-48463563(+)$1	258	59	99	12.0877
a[ccc"""==========lll==========4444ccc]a	chr1:28564373-28564620(+)$1	247	116	156	14.0031
ggggggg!!ccc[cccqqqqqqqqccc22ccc22gggggg	chr17:7128248-7128579(+)$1	331	209	249	11.2273
"""iiiiiiiii!!cccccc####bb[dddd=========	chr17:41154679-41154900(+)$1	221	110	150	11.2741
##a[bbeeeee[bb!!cccnnnnnccc22bbeeeee]bb]	chr6:35436475-35436696(+)$1	221	105	145	12.3375
fffff[dddd####ccc[ammmma]ccc22ddddffffff	chr1:113246205-113246502(-)$1	297	159	199	11.9611
iiiiiiiii[bb"""cccooooooccc333bb]iiiiiii	chr11:60658137-60658361(-)$1	224	42	82	18.7130
ggggeeeee"""eeeee[ccclllccc333eeeeeeeeee	chr1:19952780-19953036(+)$1	256	9	49	12.2035
Hbb[dddd[dddd[acccooooooccc]a]dddddddd]b	chr16:89627628-89627848(+)$1	220	85	125	12.1807
hhhhhh!!ccc[gggggggooooooggggggg]ccc22hh	chr17:37006278-37006517(-)$1	239	37	77	11.8846
!==========!!ccc[bblllbb]ccc22==========	chr12:53691742-53691957(+)$1	215	166	206	14.6814
fffgggggggdddd[ccclllcccdddd22ggggggg444	chr17:61908982-61909249(+)$1	267	96	136	11.6167
e[eeeee[ccc"""bb[cccooooooccc]bb]ccc]eee	chr7:99015011-99015277(+)$1	266	167	207	13.2039
::bb!!ccc[a"""ddddoooooodddd333a]ccc22bb	chr19:50002694-50002926(+)$1	232	47	87	13.2086
cc"""ccc[ccc[ddddcccmmmmccc22dddd333ccc6	chr5:180670650-180670899(-)$1	249	182	222	12.4663
####ccc"""ccc####aooooooa333ccc333ccceee	chr11:46403747-46403990(+)$1	243	71	111	16.2272
[cccdddd"""eeeee[cccmmmmccc4444eeeeedddd	chr11:5290726-5290930(-)$1	204	87	127	11.5832
dddd!!bb[bb$$$$$cccmmmmccc4444bb]bb22ddd	chr3:52028021-52028242(-)$1	221	41	81	12.0142
ccc!!ddddbb!!bb[cccmmmmcccbb22bb]dddd]cc	chr19:2328285-2328527(-)$1	242	128	168	11.5233
dd==========####cccnnnnnccc333==========	chr15:64448125-64448394(-)$1	269	30	70	17.5739
hhhhhheeeeegggggggooooooggggggg4444eeeee	chr11:47440563-47440813(-)$1	250	155	195	12.6153
:dddd[dddd!!cccbbcccmmmmccc333bb]ccc22dd	chr12:56553314-56553533(+)$1	219	163	203	11.5185
effffff[gggggggcccooooooccc>>>>>>>>>>>>>	chr17:49247198-49247421(+)$1	223	131	171	12.9353
gg$$$$$gggggggccccccmmmmccc]ccc]ggggggg]	chr10:120900585-120900884(-)$1	299	38	78	12.0753
b!!bbccc!!eeeee[bboooooobb]eeeee333ccc]b	chr16:85834776-85834985(+)$1	209	77	117	12.4655
iiiiiiiii$$$$$ddddnnnnndddd4444iiiiiiiii	chr12:98992357-98992574(+)$1	217	133	173	13.4872
"==========="""cccnnnnnccc7777777=======	chr10:102286053-102286282(-)$1	229	143	183	13.2978

#otherMatches

#Seq PSSM
UGGCGGUGGUCGCGGGUCGGGCGGGACAGGCUCACCGAGG	chr9:140005231-140005471(-)$1	240	158	198	14.9139
AUAUUAACAAGAAAUUGCAUGCGUGUUUUGUUUUUUUUAA	chr6:133138530-133138764(+)$1	234	47	87	13.3299
GGCUGGGGCUGGAGACGACGAGGAGGAGGAUUAAGUCCAC	chr19:54711297-54711536(+)$1	239	112	152	12.8720
CAUUGAUGUCUGAGCCUGCCGGAGGGCGAGGGUCGGAGAA	chr7:99751437-99751676(+)$1	239	137	177	12.1849
GGAGGGAUUAGAGGAGCCAAACGGGCCGGGUCUGAACCCA	chr19:8386439-8386653(+)$1	214	45	85	13.9091
CCCCAUCCCCUCUGACAGCACUCGCAGGAAGGGGGGUCGC	chr5:149823741-149823976(-)$1	235	70	110	12.6535
UUGGAAGUGGGUAUAGGCGAGCUCCAGGCCCCCACUCCUG	chr11:64012314-64012534(-)$1	220	23	63	10.8596
UUGUGACCCUUCUUCUCUUUCUAGGUUGACAAGGUCACAG	chr20:60962867-60963072(+)$1	205	7	47	12.2147
ACAACGGCAAGACCUUCAACCAGGUGGAGAUCAAGGUGUG	chr19:1440123-1440348(+)$1	225	94	134	12.5110
UUGUUGUCCCACUCUCUGUUACCUGCAUUGUGUGACAGCA	chr14:20925556-20925826(+)$1	270	9	49	17.0346
CUGUGGUGGAGGACUGGAUGAACUUCUACAUCAACUAUUA	chr16:31539759-31539987(+)$1	228	59	99	15.5484
ugcuuggcaacagcacagacccagcuguguUCACAGACCU	chr11:65421995-65422225(-)$1	230	78	118	13.4009
UGGGGCUGGCUCUUACUCAGGAAACUGCUGUGCCCAACCC	chr1:46654481-46654731(-)$1	250	186	226	13.2698
GCUGGCUGGCGGAAUCAUGGCUCAUGCUGGGCUGGCUAGU	chr12:53691533-53691767(+)$1	234	35	75	14.5459
GUCCUGUAUCAUCCAUACUUGUACUACCUUGUCCUAUGAA	chr7:100486137-100486375(+)$1	238	51	91	12.4686
GAGUGGUGGCGGCUAUGGAGGAGACCGAGGUGGGGGCUAC	chr17:34171863-34172132(+)$1	269	98	138	13.6477
CGUGGCCCAGAUUUAUGGUGAGUCCCAGGAACUGGGCGCA	chr19:39924209-39924468(-)$1	259	147	187	13.4161
UUCCGGAAGUUCCUGGUCCACAACGUCAAGGAGCUGGAAG	chr3:12880854-12881071(-)$1	217	165	205	13.7793
GCCGCUGGGGCUGCUGAAAAUGCCUUCCGGGCCCCGUGAC	chr1:155225929-155226183(-)$1	254	81	121	13.7274
GUGCCUUCUUGAUCAGGGUGUCUCCUUGUGCUUCUGAGAU	chr19:49949539-49949782(-)$1	243	132	172	13.2542
CCUGGGUUCCCUGCAGGUGCUACAGGCAGAUGGUGGGACC	chr8:145135045-145135320(+)$1	275	83	123	10.9421
GGGAUCACAAACAUUAACAAAAAAGUUAACUUAUGUGACU	chr9:124906378-124906636(-)$1	258	211	251	13.0623
GGGCUCCCAAAACCAGCUUACAAUAGCCUUUUGCGCUGCC	chr6:5109507-5109802(-)$1	295	214	254	14.9332
UGAGGGGUUUGGCCCUCUGAGUUCCGGUGGGUCCCGUAUC	chr7:127731799-127732031(+)$1	232	173	213	11.8050
AUAUUAACAAGAAAUUGCAUGCGUGUUUUGUUUUUUUUAA	chr6:133138524-133138727(+)$1	203	53	93	13.3299
UGGCCUCCAGUGACGCCAGCGGCAUGGUCAUCGUCUGGAG	chrX:48463305-48463563(+)$1	258	59	99	12.0877
GUGCACACCGUGUGCCAUAGAAUGGCACAUGUCAUUGCCC	chr1:28564373-28564620(+)$1	247	116	156	14.0031
CAAGCCAAAGCCGAAGCCCCUUUCCUUAAGGCCCUGGUUU	chr17:7128248-7128579(+)$1	331	209	249	11.2273
UUUGAAGAGAGGUAAGUAGGCUUUGGUAGUGAAUGGUGGA	chr17:41154679-41154900(+)$1	221	110	150	11.2741
AAGUCUCUCGCGACACCCUGUACGAGGCGGUGCGGGAAGU	chr6:35436475-35436696(+)$1	221	105	145	12.3375
AAGGAUCAGUUUCCGGAGGUCUACGUCCCUACUGUCUUUG	chr1:113246205-113246502(-)$1	297	159	199	11.9611
GCAGUUCCUGUGAGACAGGAGAGGCUGAGCCAAGGGAACU	chr11:60658137-60658361(-)$1	224	42	82	18.7130
UGGCCCUUUGGGUCUGACCUGAUACAGCAAUUAGAGAGGG	chr1:19952780-19953036(+)$1	256	9	49	12.2035
CCCACGGUUCGGUACCACACGAAGGUGCGCGCCGGCCGCG	chr16:89627628-89627848(+)$1	220	85	125	12.1807
uuuUUUAAUGCAGGUUCUGCCAUUACAGGACCAGUAGCAA	chr17:37006278-37006517(-)$1	239	37	77	11.8846
UCAGGAGAAGCACGCCAUGAAACAGGGUAAGUUUUUCCUG	chr12:53691742-53691957(+)$1	215	166	206	14.6814
UUCAGGGCGUGUGCACAGAAGCUGGCAUGUAUGCCCUGCG	chr17:61908982-61909249(+)$1	267	96	136	11.6167
GAACUGCAUCUGCCGCGUGCCCAAAAGCAAGCUGGAAGUG	chr7:99015011-99015277(+)$1	266	167	207	13.2039
AGGACAUGGCCCUACCUGCCUCCACAGGGACGUCCAGAUC	chr19:50002694-50002926(+)$1	232	47	87	13.2086
GGACAUGAUCCUCUCCGCCUCUCGAGGUACGGACUAAGGU	chr5:180670650-180670899(-)$1	249	182	222	12.4663
GAACUCUGUUCCUCGCGCGUUGUAGAUAAGGUGAAGAAGG	chr11:46403747-46403990(+)$1	243	71	111	16.2272
CUCUGCCAUCCUGGGCAACCCCAAGGUCAAGGCCCAUGGC	chr11:5290726-5290930(-)$1	204	87	127	11.5832
GCAGCAGGGAGAGACUUGGGGACCCACAUGCUGCCACCUG	chr3:52028021-52028242(-)$1	221	41	81	12.0142
GGGAGGCCGCGAAGGUGAGGAGGCUCCCGCUGUCGGUACC	chr19:2328285-2328527(-)$1	242	128	168	11.5233
CUUCCACCUUUCUUUUCCAGGAGGUGGUGCGGAAGGUGGA	chr15:64448125-64448394(-)$1	269	30	70	17.5739
UCAGCUGGGGUGGGUGCGUUGCUUUGUGCCUUCUUGCCCC	chr11:47440563-47440813(-)$1	250	155	195	12.6153
GAGGUGCUCAAGGUCCUGGGGAACCCCAAGAGUGAUGGUG	chr12:56553314-56553533(+)$1	219	163	203	11.5185
CCGAGUGAUGCUUGGGGAGACCAAUCCAGCAGAUUCAAAG	chr17:49247198-49247421(+)$1	223	131	171	12.9353
UUAACUAUUUUUCAGAUACAGUACUGUAGUCUUGAAGAGA	chr10:120900585-120900884(-)$1	299	38	78	12.0753
AUUUCCACCUCUGUGUGUGUACGAGCUCAUGGUAAGUGUG	chr16:85834776-85834985(+)$1	209	77	117	12.4655
CACUUAAAAAUUUAUACUAUGAAAGUACUUAUUUUAAGUG	chr12:98992357-98992574(+)$1	217	133	173	13.4872
UGCUCCCUUAGGCACGCUUGCUUAGCCCCAUUUCCUGAGG	chr10:102286053-102286282(-)$1	229	143	183	13.2978

#DB
(..((((((..((..(((......)))..)))))))).))	chr9:140005231-140005471(-)$1	1	158	198	14.9139
(.(..(((((((...(((....))))))))))..).)).)	chr6:133138530-133138764(+)$1	1	47	87	13.3299
(((..(((((.((..(..(.....)..)..)).)))))..	chr19:54711297-54711536(+)$1	1	112	152	12.8720
(((((...(((((.((((((....))).))).)))))...	chr7:99751437-99751676(+)$1	1	137	177	12.1849
((.(((.(((((...(((.....)))....))))).))).	chr19:8386439-8386653(+)$1	1	45	85	13.9091
...(..(((((((..(.((....)).)..)))))))..).	chr5:149823741-149823976(-)$1	1	70	110	12.6535
((((.((((((....(((.........))))))))).)))	chr11:64012314-64012534(-)$1	1	23	63	10.8596
((((((((..((..(.((....)))..))...))))))))	chr20:60962867-60963072(+)$1	1	7	47	12.2147
(((.((.(..((.(((((......))))).))..).))))	chr19:1440123-1440348(+)$1	1	94	134	12.5110
((((((((.(((....(((.....)))..))).)))))))	chr14:20925556-20925826(+)$1	1	9	49	17.0346
(((((((((..((.((((......))))..))..))))))	chr16:31539759-31539987(+)$1	1	59	99	15.5484
((((.(((...(((((((......)))))))....).)).	chr11:65421995-65422225(-)$1	1	78	118	13.4009
)(((...(((.(.....(((....)))..).)))...)))	chr1:46654481-46654731(-)$1	1	186	226	13.2698
((((((((((.....((((...))))....))))))))))	chr12:53691533-53691767(+)$1	1	35	75	14.5459
(..((...((((....((..(......)..))...)))))	chr7:100486137-100486375(+)$1	1	51	91	12.4686
..(((((..(.(((.(((......))).))).)..)))))	chr17:34171863-34172132(+)$1	1	98	138	13.6477
((((((((((.(((.(((......))).))))))))).))	chr19:39924209-39924468(-)$1	1	147	187	13.4161
((((...(((((((.(.(......).).))))))))))))	chr3:12880854-12881071(-)$1	1	165	205	13.7793
))(((.((((((...(((......)))..)))))))))..	chr1:155225929-155226183(-)$1	1	81	121	13.7274
....(((...(..(((((.....)))))..)....)))..	chr19:49949539-49949782(-)$1	1	132	172	13.2542
)))((((.(((..((..((((...))))..))..))))))	chr8:145135045-145135320(+)$1	1	83	123	10.9421
(((.(((((....(((((......)))))....)))))))	chr9:124906378-124906636(-)$1	1	211	251	13.0623
((((..((((((...(((......))).))))).)..)))	chr6:5109507-5109802(-)$1	1	214	254	14.9332
(.((((((..(((((.(((.....))).)))))....)))	chr7:127731799-127732031(+)$1	1	173	213	11.8050
(.(..(((((((...(((....))))))))))..).)).)	chr6:133138524-133138727(+)$1	1	53	93	13.3299
(.(((((((((((.((((......))))..))).))))))	chrX:48463305-48463563(+)$1	1	59	99	12.0877
(.(((...((((((((((...))))))))))....))).)	chr1:28564373-28564620(+)$1	1	116	156	14.0031
(((((((..(((.(((........)))..)))..))))))	chr17:7128248-7128579(+)$1	1	209	249	11.2273
...(((((((((..((((((....((.(((((((((((((	chr17:41154679-41154900(+)$1	1	110	150	11.2741
..(.(((((((.((..(((.....)))..))))))).)).	chr6:35436475-35436696(+)$1	1	105	145	12.3375
(((((.((((....(((.(....).)))..))))))))))	chr1:113246205-113246502(-)$1	1	159	199	11.9611
(((((((((.((...(((......)))...)).)))))))	chr11:60658137-60658361(-)$1	1	42	82	18.7130
(((((((((...(((((.(((...)))...))))))))))	chr1:19952780-19953036(+)$1	1	9	49	12.2035
(((.((((.((((.((((......))).).)))))))).)	chr16:89627628-89627848(+)$1	1	85	125	12.1807
((((((..(((.(((((((......))))))).)))..))	chr17:37006278-37006517(-)$1	1	37	77	11.8846
.((((((((((..(((.((...)).)))..))))))))))	chr12:53691742-53691957(+)$1	1	166	206	14.6814
((((((((((((((.(((...)))))))..)))))))...	chr17:61908982-61909249(+)$1	1	96	136	11.6167
(.(((((.(((...((.(((......))).)).))).)))	chr7:99015011-99015277(+)$1	1	167	207	13.2039
..((..(((.(...((((......))))...).)))..))	chr19:50002694-50002926(+)$1	1	47	87	13.2086
((...(((.(((.(((((((....)))..))))...))).	chr5:180670650-180670899(-)$1	1	182	222	12.4663
....(((...(((....(......)...)))...))))))	chr11:46403747-46403990(+)$1	1	71	111	16.2272
.(((((((...(((((.(((....)))....)))))))))	chr11:5290726-5290930(-)$1	1	87	127	11.5832
((((..((.((.....(((....)))....)).))..)))	chr3:52028021-52028242(-)$1	1	41	81	12.0142
(((..((((((..((.(((....)))))..)).)))).))	chr19:2328285-2328527(-)$1	1	128	168	11.5233
((((((((((((....(((.....)))...))))))))))	chr15:64448125-64448394(-)$1	1	30	70	17.5739
))))))((((((((((((......)))))))....)))))	chr11:47440563-47440813(-)$1	1	155	195	12.6153
.((((.((((..((((((((....)))...)).)))..))	chr12:56553314-56553533(+)$1	1	163	203	11.5185
)((((((.((((((((((......))).............	chr17:49247198-49247421(+)$1	1	131	171	12.9353
((.....(((((((((((((....))).))).))))))).	chr10:120900585-120900884(-)$1	1	38	78	12.0753
(..(((((..(((((.((......)).)))))...))).)	chr16:85834776-85834985(+)$1	1	77	117	12.4655
(((((((((.....((((.....))))....)))))))))	chr12:98992357-98992574(+)$1	1	133	173	13.4872
.(((((((((((...(((.....))).......)))))))	chr10:102286053-102286282(-)$1	1	143	183	13.2978

#PSSM
e : 0.15	d : 0.13	b : 0.09	f : 0.07	" : 0.05	= : 0.05	c : 0.05	i : 0.05	# : 0.05	g : 0.05	h : 0.03	: : 0.03	G : 0.01	' : 0.01	a : 0.01	H : 0.01	! : 0.01	[ : 0.01	
d : 0.13	[ : 0.11	e : 0.09	f : 0.09	= : 0.09	c : 0.09	! : 0.05	i : 0.05	# : 0.05	g : 0.05	" : 0.03	h : 0.03	' : 0.01	b : 0.01	: : 0.01	
c : 0.13	= : 0.11	d : 0.11	e : 0.09	f : 0.09	! : 0.05	a : 0.05	" : 0.05	i : 0.05	h : 0.05	# : 0.03	g : 0.03	b : 0.03	[ : 0.01	$ : 0.01	
c : 0.11	= : 0.11	d : 0.11	f : 0.09	! : 0.07	[ : 0.07	i : 0.07	e : 0.05	b : 0.05	h : 0.05	g : 0.05	# : 0.03	a : 0.01	" : 0.01	$ : 0.01	
! : 0.15	c : 0.11	= : 0.11	f : 0.09	b : 0.07	i : 0.07	e : 0.07	d : 0.07	" : 0.05	h : 0.05	[ : 0.03	g : 0.03	$ : 0.01	
= : 0.11	f : 0.09	e : 0.09	" : 0.09	c : 0.09	g : 0.07	! : 0.07	i : 0.07	d : 0.07	b : 0.05	[ : 0.05	h : 0.05	$ : 0.01	
e : 0.13	f : 0.11	= : 0.11	d : 0.11	g : 0.09	" : 0.09	c : 0.09	i : 0.07	[ : 0.03	b : 0.03	a : 0.01	h : 0.01	! : 0.01	$ : 0.01	
e : 0.13	g : 0.11	= : 0.11	f : 0.09	" : 0.09	d : 0.09	i : 0.07	c : 0.07	! : 0.05	[ : 0.05	a : 0.03	h : 0.01	b : 0.01	
e : 0.15	g : 0.13	! : 0.11	c : 0.09	= : 0.09	f : 0.07	[ : 0.07	i : 0.07	" : 0.07	d : 0.07	h : 0.01	
g : 0.13	c : 0.13	! : 0.11	e : 0.11	" : 0.09	= : 0.09	d : 0.07	f : 0.05	[ : 0.03	b : 0.03	a : 0.01	# : 0.01	h : 0.01	i : 0.01	$ : 0.01	
c : 0.15	e : 0.13	g : 0.11	b : 0.09	[ : 0.07	= : 0.07	! : 0.05	" : 0.05	d : 0.05	f : 0.03	$ : 0.03	a : 0.03	# : 0.03	i : 0.01	
g : 0.15	c : 0.13	b : 0.11	e : 0.11	! : 0.09	# : 0.05	$ : 0.05	d : 0.05	= : 0.05	" : 0.05	[ : 0.03	a : 0.01	f : 0.01	i : 0.01	
" : 0.17	g : 0.13	# : 0.11	! : 0.11	e : 0.09	c : 0.09	b : 0.07	$ : 0.07	[ : 0.05	d : 0.03	= : 0.01	
" : 0.17	e : 0.13	# : 0.11	g : 0.11	! : 0.09	c : 0.09	[ : 0.07	$ : 0.07	b : 0.05	d : 0.03	= : 0.01	
" : 0.13	c : 0.13	e : 0.13	# : 0.09	d : 0.09	! : 0.07	g : 0.07	[ : 0.07	$ : 0.05	b : 0.05	a : 0.03	= : 0.01	
c : 0.38	d : 0.11	e : 0.09	[ : 0.07	# : 0.07	a : 0.05	g : 0.05	$ : 0.03	! : 0.03	b : 0.03	= : 0.01	
c : 0.46	d : 0.11	[ : 0.09	b : 0.07	e : 0.07	g : 0.05	! : 0.03	$ : 0.01	= : 0.01	q : 0.01	# : 0.01	
c : 0.53	d : 0.11	b : 0.09	e : 0.05	g : 0.05	a : 0.03	[ : 0.03	! : 0.01	= : 0.01	q : 0.01	
o : 0.34	c : 0.28	n : 0.07	m : 0.05	a : 0.03	b : 0.03	d : 0.03	l : 0.03	r : 0.01	! : 0.01	q : 0.01	g : 0.01	
o : 0.36	n : 0.17	c : 0.17	m : 0.13	l : 0.07	r : 0.01	! : 0.01	d : 0.01	q : 0.01	
o : 0.38	m : 0.24	n : 0.17	l : 0.07	r : 0.01	a : 0.01	d : 0.01	q : 0.01	# : 0.01	c : 0.01	
o : 0.40	m : 0.24	n : 0.17	l : 0.07	r : 0.01	= : 0.01	q : 0.01	# : 0.01	c : 0.01	
o : 0.40	m : 0.19	n : 0.17	c : 0.05	b : 0.03	l : 0.03	r : 0.01	d : 0.01	= : 0.01	q : 0.01	# : 0.01	
o : 0.40	c : 0.13	m : 0.11	n : 0.09	b : 0.05	d : 0.03	l : 0.03	r : 0.01	e : 0.01	= : 0.01	q : 0.01	# : 0.01	a : 0.01	
c : 0.49	d : 0.13	a : 0.07	b : 0.05	e : 0.05	o : 0.05	g : 0.03	] : 0.03	r : 0.01	= : 0.01	
c : 0.49	d : 0.13	g : 0.09	e : 0.05	2 : 0.03	] : 0.03	o : 0.03	b : 0.03	r : 0.01	= : 0.01	3 : 0.01	
c : 0.44	d : 0.11	g : 0.09	4 : 0.05	e : 0.05	2 : 0.03	a : 0.03	r : 0.01	o : 0.01	= : 0.01	[ : 0.01	3 : 0.01	b : 0.01	] : 0.01	7 : 0.01	
2 : 0.15	] : 0.15	d : 0.11	g : 0.09	4 : 0.09	3 : 0.09	c : 0.07	e : 0.07	a : 0.03	b : 0.03	= : 0.01	> : 0.01	7 : 0.01	
2 : 0.34	c : 0.13	g : 0.11	4 : 0.09	e : 0.09	3 : 0.09	b : 0.01	= : 0.01	d : 0.01	a : 0.01	> : 0.01	7 : 0.01	
2 : 0.19	c : 0.15	g : 0.13	4 : 0.11	3 : 0.11	] : 0.05	e : 0.05	b : 0.03	d : 0.03	a : 0.01	f : 0.01	= : 0.01	> : 0.01	7 : 0.01	
b : 0.23	g : 0.15	c : 0.15	e : 0.09	= : 0.07	d : 0.07	4 : 0.05	f : 0.03	3 : 0.03	] : 0.01	a : 0.01	> : 0.01	7 : 0.01	
b : 0.19	e : 0.13	g : 0.11	4 : 0.09	f : 0.07	c : 0.07	= : 0.07	] : 0.05	d : 0.05	3 : 0.03	a : 0.01	> : 0.01	i : 0.01	7 : 0.01	
] : 0.17	e : 0.13	2 : 0.11	= : 0.09	4 : 0.09	f : 0.07	g : 0.07	3 : 0.05	d : 0.05	c : 0.03	a : 0.01	> : 0.01	i : 0.01	7 : 0.01	
2 : 0.13	e : 0.13	= : 0.13	4 : 0.09	c : 0.09	f : 0.07	g : 0.07	3 : 0.07	d : 0.05	] : 0.03	i : 0.03	b : 0.01	> : 0.01	
e : 0.13	= : 0.13	c : 0.11	f : 0.09	g : 0.09	4 : 0.09	a : 0.07	3 : 0.07	i : 0.05	d : 0.03	2 : 0.01	h : 0.01	b : 0.01	> : 0.01	
c : 0.19	e : 0.15	= : 0.13	f : 0.09	] : 0.07	g : 0.07	i : 0.05	d : 0.05	3 : 0.03	2 : 0.03	a : 0.01	4 : 0.01	h : 0.01	> : 0.01	
c : 0.15	= : 0.13	e : 0.11	2 : 0.11	f : 0.07	] : 0.07	d : 0.07	b : 0.05	i : 0.05	g : 0.05	3 : 0.01	4 : 0.01	h : 0.01	> : 0.01	
e : 0.15	c : 0.13	= : 0.13	d : 0.11	b : 0.09	2 : 0.07	] : 0.05	i : 0.05	f : 0.05	4 : 0.03	g : 0.03	h : 0.01	> : 0.01	
d : 0.15	e : 0.13	= : 0.13	] : 0.09	c : 0.09	4 : 0.05	i : 0.05	b : 0.05	f : 0.05	h : 0.03	g : 0.03	a : 0.01	: : 0.01	3 : 0.01	> : 0.01	
d : 0.17	e : 0.13	= : 0.13	b : 0.07	4 : 0.05	c : 0.05	i : 0.05	] : 0.05	f : 0.05	2 : 0.03	h : 0.03	: : 0.01	3 : 0.01	a : 0.01	g : 0.01	6 : 0.01	> : 0.01	

#score	683.98272353744
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_UTR_m1_run2.txt

#BEAR
========="""eeeee!!aooooooa22eeeee88888	chr1:150192890-150193164(-)$1	274	172	211	14.2423
c22ccc:ggggggg!!ddddrrrrrrrrrddddgggggg	chr11:122929530-122929788(-)$1	258	80	119	15.4195
:ggggggg!!bb[gggggggooooooggggggg]bb333	chr7:158424080-158424350(-)$1	270	83	122	14.7373
eeeee::bb[a!!gggggggrrrrrrrrrggggggg]a]	chr6:111136056-111136365(-)$1	309	151	190	15.8892
iiiiii[a####ccc[ddddpppppppdddd22ccc333	chr7:97481370-97481639(-)$1	269	74	113	17.8390
======[bb"""ggggggg[bboooooobb]ggggggg>	chr6:31698294-31698539(-)$1	245	104	143	15.1975
"ccc[a!!============qqqqqqqq===========	chr16:28848265-28848530(+)$1	265	5	44	15.5083
$ccc####bb!!gggggggooooooggggggg22bb333	chr9:100777550-100777862(+)$1	312	66	105	14.8941
===========!!ddddcccpppppppccc22dddd555	chr11:62283507-62283768(-)$1	261	30	69	14.5021
%eeeee"""===========ppppppp===========0	chr14:70238205-70238473(+)$1	268	27	66	17.2736
oodddd:ggggggg!!ddddrrrrrrrrrddddgggggg	chr11:122929519-122929730(-)$1	211	22	61	15.6211
:::eeeee"""a[ffffffrrrrrrrrrffffff]a333	chr2:97525522-97525809(-)$1	287	32	71	14.0737
oodddd:ggggggg!!ddddrrrrrrrrrddddgggggg	chr11:122929515-122929719(-)$1	204	11	50	15.6211
[bb[bb[bb!!ccc"""a[aooooooa]a4444ccc22b	chr19:49611445-49611716(+)$1	271	61	100	14.6405

#otherMatches

#Seq PSSM
AUCAUUCUAAGACCAGAUUCUCUAAUGUUUCUGGGUGUG	chr1:150192890-150193164(-)$1	274	172	211	14.2423
CUGACucgcuaugaugauggauuccaaaaccauucguag	chr11:122929530-122929788(-)$1	258	80	119	15.4195
ACCCAUAUAAUAGGGAAAGGGUGGGAUUUUUUUGUGGGA	chr7:158424080-158424350(-)$1	270	83	122	14.7373
UGGGUAAGAGCAGGGGCGGGAGGAGUAGGCUCGCUCGGG	chr6:111136056-111136365(-)$1	309	151	190	15.8892
CUUUAUGCUGUAAUGUGAAAGCAAAUAUUUCUUCGUGUU	chr7:97481370-97481639(-)$1	269	74	113	17.8390
UUUAUUGUGGGGUGGGAUGAGUAGGACAACAUAUUUCAG	chr6:31698294-31698539(-)$1	245	104	143	15.1975
AGGGUCCAGCAGGGGUGGGGGGUUCCUGCUCUGCCCCUG	chr16:28848265-28848530(+)$1	265	5	44	15.5083
UCCUAAAGUCAAUUUUUGUUACUGUACagaggaggaaga	chr9:100777550-100777862(+)$1	312	66	105	14.8941
AAACGCCCACAGAUGGCCCAGAGGUGGUGGUAGUCAGGG	chr11:62283507-62283768(-)$1	261	30	69	14.5021
UUCCCAAACCAUACUUGCUAAAAAUUCUGGUAAGUAUGU	chr14:70238205-70238473(+)$1	268	27	66	17.2736
CUGACucgcuaugaugauggauuccaaaaccauucguag	chr11:122929519-122929730(-)$1	211	22	61	15.6211
UUUUCAGGGUGGGGGGAGGGAGAUGGAGCCUCCUGUGUG	chr2:97525522-97525809(-)$1	287	32	71	14.0737
CUGACucgcuaugaugauggauuccaaaaccauucguag	chr11:122929515-122929719(-)$1	204	11	50	15.6211
gugaccgcgagcacaaacggggggagcggggcagugagc	chr19:49611445-49611716(+)$1	271	61	100	14.6405

#DB
(((((((((...(((((..(......)..))))).....	chr1:150192890-150193164(-)$1	1	172	211	14.2423
)..))).(((((((..((((.........))))))))))	chr11:122929530-122929788(-)$1	1	80	119	15.4195
.(((((((..((.(((((((......))))))).))...	chr7:158424080-158424350(-)$1	1	83	122	14.7373
)))))..((.(..(((((((.........))))))).).	chr6:111136056-111136365(-)$1	1	151	190	15.8892
((((((.(....(((.((((.......))))..)))...	chr7:97481370-97481639(-)$1	1	74	113	17.8390
((((((.((...(((((((.((......)).))))))).	chr6:31698294-31698539(-)$1	1	104	143	15.1975
.(((.(..((((((((((((........)))))))))))	chr16:28848265-28848530(+)$1	1	5	44	15.5083
.(((....((..(((((((......)))))))..))...	chr9:100777550-100777862(+)$1	1	66	105	14.8941
(((((((((((..(((((((.......)))..))))...	chr11:62283507-62283768(-)$1	1	30	69	14.5021
.(((((...(((((((((((.......))))))))))).	chr14:70238205-70238473(+)$1	1	27	66	17.2736
..)))).(((((((..((((.........))))))))))	chr11:122929519-122929730(-)$1	1	22	61	15.6211
...(((((...(.((((((.........)))))).)...	chr2:97525522-97525809(-)$1	1	32	71	14.0737
..)))).(((((((..((((.........))))))))))	chr11:122929515-122929719(-)$1	1	11	50	15.6211
.((.((.((..(((...(.(......).)....)))..)	chr19:49611445-49611716(+)$1	1	61	100	14.6405

#PSSM
= : 0.21	: : 0.14	o : 0.14	c : 0.07	e : 0.07	i : 0.07	" : 0.07	$ : 0.07	% : 0.07	[ : 0.07	
= : 0.21	e : 0.14	c : 0.14	o : 0.14	2 : 0.07	g : 0.07	i : 0.07	: : 0.07	b : 0.07	
= : 0.21	e : 0.14	c : 0.14	d : 0.14	2 : 0.07	g : 0.07	i : 0.07	: : 0.07	b : 0.07	
= : 0.21	c : 0.21	e : 0.21	d : 0.14	g : 0.07	i : 0.07	[ : 0.07	
= : 0.21	e : 0.21	d : 0.14	c : 0.07	g : 0.07	i : 0.07	[ : 0.07	# : 0.07	b : 0.07	
= : 0.21	e : 0.14	d : 0.14	c : 0.07	g : 0.07	: : 0.07	i : 0.07	a : 0.07	# : 0.07	b : 0.07	
: : 0.28	[ : 0.21	= : 0.14	g : 0.07	! : 0.07	# : 0.07	" : 0.07	e : 0.07	
g : 0.28	b : 0.21	= : 0.14	a : 0.07	! : 0.07	# : 0.07	" : 0.07	e : 0.07	
b : 0.28	= : 0.21	g : 0.21	" : 0.14	! : 0.07	# : 0.07	
" : 0.21	g : 0.21	= : 0.21	! : 0.14	[ : 0.07	# : 0.07	b : 0.07	
" : 0.21	g : 0.21	= : 0.21	! : 0.14	b : 0.07	a : 0.07	# : 0.07	
g : 0.21	! : 0.21	" : 0.14	= : 0.14	b : 0.07	# : 0.07	a : 0.07	c : 0.07	
g : 0.35	[ : 0.14	! : 0.14	c : 0.14	= : 0.14	e : 0.07	
g : 0.49	c : 0.14	= : 0.14	e : 0.07	d : 0.07	f : 0.07	
g : 0.28	! : 0.21	= : 0.14	e : 0.07	c : 0.07	d : 0.07	f : 0.07	" : 0.07	
g : 0.28	! : 0.21	= : 0.14	e : 0.07	[ : 0.07	d : 0.07	f : 0.07	" : 0.07	
d : 0.35	g : 0.28	= : 0.14	e : 0.07	f : 0.07	" : 0.07	
d : 0.28	g : 0.28	= : 0.14	! : 0.07	c : 0.07	f : 0.07	a : 0.07	
d : 0.28	g : 0.28	= : 0.14	! : 0.07	c : 0.07	f : 0.07	[ : 0.07	
d : 0.28	a : 0.14	g : 0.14	= : 0.14	[ : 0.07	o : 0.07	c : 0.07	r : 0.07	
r : 0.35	o : 0.28	p : 0.21	b : 0.07	q : 0.07	
r : 0.35	o : 0.28	p : 0.21	b : 0.07	q : 0.07	
o : 0.35	r : 0.35	p : 0.21	q : 0.07	
o : 0.35	r : 0.35	p : 0.21	q : 0.07	
o : 0.35	r : 0.35	p : 0.21	q : 0.07	
r : 0.35	o : 0.28	p : 0.21	q : 0.07	g : 0.07	
r : 0.35	p : 0.21	a : 0.14	g : 0.14	o : 0.07	q : 0.07	
r : 0.35	g : 0.14	2 : 0.07	d : 0.07	o : 0.07	q : 0.07	c : 0.07	= : 0.07	] : 0.07	
r : 0.28	g : 0.14	= : 0.14	2 : 0.07	d : 0.07	b : 0.07	c : 0.07	f : 0.07	a : 0.07	
d : 0.28	g : 0.21	= : 0.14	e : 0.07	b : 0.07	c : 0.07	f : 0.07	4 : 0.07	
d : 0.28	g : 0.21	= : 0.14	e : 0.07	] : 0.07	2 : 0.07	f : 0.07	4 : 0.07	
g : 0.28	d : 0.21	2 : 0.14	= : 0.14	e : 0.07	f : 0.07	4 : 0.07	
d : 0.28	g : 0.21	2 : 0.14	= : 0.14	e : 0.07	f : 0.07	4 : 0.07	
g : 0.35	c : 0.14	= : 0.14	e : 0.07	] : 0.07	2 : 0.07	d : 0.07	f : 0.07	
g : 0.35	b : 0.14	c : 0.14	= : 0.14	8 : 0.07	d : 0.07	] : 0.07	
g : 0.35	b : 0.14	c : 0.14	= : 0.14	8 : 0.07	d : 0.07	a : 0.07	
g : 0.28	3 : 0.28	= : 0.14	8 : 0.07	] : 0.07	5 : 0.07	2 : 0.07	
g : 0.28	3 : 0.28	= : 0.14	8 : 0.07	a : 0.07	5 : 0.07	2 : 0.07	
3 : 0.28	g : 0.21	8 : 0.07	] : 0.07	> : 0.07	= : 0.07	5 : 0.07	0 : 0.07	b : 0.07	

#score	215.4600195137144
#seq	14
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_CDS_m3_run2.txt

#BEAR
eeeeeqqqqqqqqeeee	chr17:27050617-27050837(+)$1	220	188	205	14.1820
iiibbqqqqqqqqbb44	chr2:21236022-21236249(-)$1	227	155	172	12.7615
dd[bbqqqqqqqqbb]d	chr2:216298011-216298229(-)$1	218	72	89	13.3219
[ddddqqqqqqqqdddd	chr2:216283867-216284084(-)$1	217	111	128	15.2579
eeeeeqqqqqqqqeeee	chr2:21226096-21226306(-)$1	210	65	82	14.1820
##cccqqqqqqqqcccd	chr4:74318178-74318438(+)$1	260	216	233	13.6302
b[cccqqqqqqqqccc]	chr2:21237974-21238216(-)$1	242	71	88	12.9508
"""bbqqqqqqqqbb]f	chr2:216286792-216287029(-)$1	237	90	107	12.7974
eeeeeqqqqqqqqeeee	chr2:21234692-21234913(-)$1	221	181	198	14.1820
d[cccqqqqqqqqccc]	chr1:116941175-116941446(+)$1	271	212	229	13.1335
:ddddqqqqqqqqdddd	chr2:216251534-216251750(-)$1	216	164	181	14.3105
eeeeeqqqqqqqqeeee	chr2:21237282-21237516(-)$1	234	29	46	14.1820
eeeeeqqqqqqqqeeee	chr12:9242867-9243095(-)$1	228	101	118	14.1820
$ddddqqqqqqqqdddd	chr3:133472373-133472645(+)$1	272	170	187	15.0722
dddddqqqqqqqqdddd	chr4:74283198-74283424(+)$1	226	104	121	15.0152
[ddddqqqqqqqqdddd	chr2:21235234-21235472(-)$1	238	193	210	15.2579
:ddddqqqqqqqqdddd	chr6:160479844-160480079(+)$1	235	88	105	14.3105
fddddqqqqqqqqdddd	chr4:74309035-74309245(+)$1	210	140	157	14.9231
f!!bbqqqqqqqqbb]f	chr2:216248759-216248990(-)$1	231	144	161	12.6680
"ddddqqqqqqqqdddd	chr2:21237947-21238174(-)$1	227	95	112	15.2738
:ddddqqqqqqqqdddd	chr9:124091418-124091661(+)$1	243	225	242	14.3105
eeeeeqqqqqqqqeeee	chr4:74275026-74275236(+)$1	210	163	180	14.1820
f!!bbqqqqqqqqbb]f	chr2:216248790-216249006(-)$1	216	160	177	12.6680
eeeeeqqqqqqqqeeee	chr1:116931423-116931644(+)$1	221	41	58	14.1820
[ddddqqqqqqqqdddd	chr2:216283884-216284156(-)$1	272	183	200	15.2579
[ddddqqqqqqqqdddd	chr1:116931221-116931493(+)$1	272	120	137	15.2579
[ddddqqqqqqqqdddd	chr2:216262366-216262610(-)$1	244	84	101	15.2579
$$cccqqqqqqqqccc6	chr16:74640521-74640771(-)$1	250	222	239	12.4505
iiibbqqqqqqqqbb44	chr2:21235935-21236182(-)$1	247	88	105	12.7615
[ddddqqqqqqqqdddd	chr2:216248012-216248246(-)$1	234	23	40	15.2579
eeeeeqqqqqqqqeeee	chr4:74275094-74275304(+)$1	210	95	112	14.1820
gggggqqqqqqqqgggg	chr17:1678360-1678590(+)$1	230	92	109	12.7741
eeeeeqqqqqqqqeeee	chr1:116939121-116939365(+)$1	244	162	179	14.1820
$ddddqqqqqqqqdddd	chr12:9224865-9225141(-)$1	276	149	166	15.0722
eeeeeqqqqqqqqeeee	chr4:74275000-74275226(+)$1	226	189	206	14.1820
"""bbqqqqqqqqbb]f	chr2:216286861-216287066(-)$1	205	127	144	12.7974
eeeeeqqqqqqqqeeee	chr2:21237361-21237565(-)$1	204	78	95	14.1820
""cccqqqqqqqqccc6	chr2:216296455-216296686(-)$1	231	103	120	12.9029
:ddddqqqqqqqqdddd	chr2:21237316-21237527(-)$1	211	144	161	14.3105
dddddqqqqqqqqdddd	chr12:9254115-9254363(-)$1	248	154	171	15.0152
dd[bbqqqqqqqqbb]d	chr2:216296558-216296782(-)$1	224	96	113	13.3219
!ddddqqqqqqqqdddd	chr3:133486782-133487025(+)$1	243	18	35	15.2999
:ddddqqqqqqqqdddd	chr3:133473379-133473612(+)$1	233	29	46	14.3105
cddddqqqqqqqqdddd	chrX:132887834-132888059(-)$1	225	17	34	15.0243
""cccqqqqqqqqccc3	chr2:21237875-21238121(-)$1	246	155	172	13.3479
eeeeeqqqqqqqqeeee	chr4:74307937-74308156(+)$1	219	193	210	14.1820
iiibbqqqqqqqqbb44	chr2:21236049-21236320(-)$1	271	226	243	12.7615
[ddddqqqqqqqqdddd	chr2:21235140-21235361(-)$1	221	82	99	15.2579
$ddddqqqqqqqqdddd	chr4:155527772-155528113(-)$1	341	253	270	15.0722
dddddqqqqqqqqdddd	chr4:74283154-74283398(+)$1	244	148	165	15.0152
dd[bbqqqqqqqqbb]d	chr2:216296524-216296743(-)$1	219	57	74	13.3219
iiiiiqqqqqqqqiiii	chr1:8925406-8925641(-)$1	235	193	210	12.9061
dddddqqqqqqqqdddd	chr2:216279559-216279781(-)$1	222	154	171	15.0152
!ddddqqqqqqqqdddd	chr2:216262410-216262650(-)$1	240	192	209	15.2999
[ddddqqqqqqqqdddd	chr3:58108853-58109129(+)$1	276	64	81	15.2579
eeeeeqqqqqqqqeeee	chr2:21237233-21237455(-)$1	222	176	193	14.1820
:ddddqqqqqqqqdddd	chr19:49993125-49993359(+)$1	234	1	18	14.3105
$ddddqqqqqqqqdddd	chr4:74277679-74277901(+)$1	222	31	48	15.0722
eeeeeqqqqqqqqeeee	chr19:6686078-6686295(-)$1	217	152	169	14.1820
eeeeeqqqqqqqqeeee	chr4:74275071-74275294(+)$1	223	118	135	14.1820
eeeeeqqqqqqqqeeee	chr2:216241200-216241433(-)$1	233	41	58	14.1820
fddddqqqqqqqqdddd	chr4:74309045-74309261(+)$1	216	130	147	14.9231
:ddddqqqqqqqqdddd	chr2:21247804-21248082(-)$1	278	169	186	14.3105
eeeeeqqqqqqqqeeee	chr2:21237221-21237433(-)$1	212	154	171	14.1820
dd[bbqqqqqqqqbbdd	chr1:116940490-116940761(+)$1	271	249	266	13.5269
"ddddqqqqqqqqdddd	chr22:39714966-39715194(-)$1	228	205	222	15.2738
eeeeeqqqqqqqqeeee	chr2:21234713-21234936(-)$1	223	204	221	14.1820
"""bbqqqqqqqqbb]f	chr2:216286743-216286956(-)$1	213	17	34	12.7974
eeeeeqqqqqqqqeeee	chrX:132730367-132730643(-)$1	276	31	48	14.1820
dddddqqqqqqqqdddd	chr12:9254015-9254284(-)$1	269	75	92	15.0152
dd[bbqqqqqqqqbb]d	chr2:216296486-216296715(-)$1	229	29	46	13.3219
:ddddqqqqqqqqdddd	chr3:133475573-133475784(+)$1	211	179	196	14.3105

#otherMatches

#Seq PSSM
AUUUUGCUUUCUAAAAA	chr17:27050617-27050837(+)$1	220	188	205	14.1820
UUCGGGCUCGUUACCAC	chr2:21236022-21236249(-)$1	227	155	172	12.7615
CUGGGAACACUUACCGA	chr2:216298011-216298229(-)$1	218	72	89	13.3219
CCUAUCCAAGUAAGUAG	chr2:216283867-216284084(-)$1	217	111	128	15.2579
GAAAACAUGUUAUUUUU	chr2:21226096-21226306(-)$1	210	65	82	14.1820
CUGAGACUUCUACCUCG	chr4:74318178-74318438(+)$1	260	216	233	13.6302
UACGUAUUUUCAGAUGA	chr2:21237974-21238216(-)$1	242	71	88	12.9508
AAGGGGUCAUGUACCGC	chr2:216286792-216287029(-)$1	237	90	107	12.7974
GAGCUGAAUGCAGAGCU	chr2:21234692-21234913(-)$1	221	181	198	14.1820
CAAUUGUGACUGGAGUA	chr1:116941175-116941446(+)$1	271	212	229	13.1335
AGGAUCCGCCAUCAUCC	chr2:216251534-216251750(-)$1	216	164	181	14.3105
AAAAUCUCCUGUCAUUU	chr2:21237282-21237516(-)$1	234	29	46	14.1820
GGGCGGCAAACUGUGUC	chr12:9242867-9243095(-)$1	228	101	118	14.1820
GAGGGUAAGUUCUCCCU	chr3:133472373-133472645(+)$1	272	170	187	15.0722
GAGGUCUCAAGAAACCU	chr4:74283198-74283424(+)$1	226	104	121	15.0152
UGGGCAGUUCAGAGUCU	chr2:21235234-21235472(-)$1	238	193	210	15.2579
UGCAGUUUAAUGUCUGC	chr6:160479844-160480079(+)$1	235	88	105	14.3105
UAUCUAGGGAAGAGGGU	chr4:74309035-74309245(+)$1	210	140	157	14.9231
CGGCCUUAAACCUGGAG	chr2:216248759-216248990(-)$1	231	144	161	12.6680
AAAAUGACUUCCAAUUU	chr2:21237947-21238174(-)$1	227	95	112	15.2738
CUAGACUUCCAGUUCUA	chr9:124091418-124091661(+)$1	243	225	242	14.3105
UGCCUGUUGCCAAAGGU	chr4:74275026-74275236(+)$1	210	163	180	14.1820
CGGCCUUAAACCUGGAG	chr2:216248790-216249006(-)$1	216	160	177	12.6680
UAGCCCAUGAUAAGGCU	chr1:116931423-116931644(+)$1	221	41	58	14.1820
CCUAUCCAAGUAAGUAG	chr2:216283884-216284156(-)$1	272	183	200	15.2579
GAGGAGACCGAAUUCCU	chr1:116931221-116931493(+)$1	272	120	137	15.2579
ACUUCAGACUCAGGAAG	chr2:216262366-216262610(-)$1	244	84	101	15.2579
GAGGUGGGACGAAGCCG	chr16:74640521-74640771(-)$1	250	222	239	12.4505
UUCGGGCUCGUUACCAC	chr2:21235935-21236182(-)$1	247	88	105	12.7615
CCUGCUUUUAUUUGUAG	chr2:216248012-216248246(-)$1	234	23	40	15.2579
UGCCUGUUGCCAAAGGU	chr4:74275094-74275304(+)$1	210	95	112	14.1820
GCUGUUUUACGCUAUGG	chr17:1678360-1678590(+)$1	230	92	109	12.7741
UCUCAGAAGGCAAUGAG	chr1:116939121-116939365(+)$1	244	162	179	14.1820
AAAGCCCACACCAGCUU	chr12:9224865-9225141(-)$1	276	149	166	15.0722
UGCCUGUUGCCAAAGGU	chr4:74275000-74275226(+)$1	226	189	206	14.1820
AAGGGGUCAUGUACCGC	chr2:216286861-216287066(-)$1	205	127	144	12.7974
AAAAUCUCCUGUCAUUU	chr2:21237361-21237565(-)$1	204	78	95	14.1820
AAAGGAGAAUGGACCUG	chr2:216296455-216296686(-)$1	231	103	120	12.9029
AGUUCAACCUCCAGAAC	chr2:21237316-21237527(-)$1	211	144	161	14.3105
AGGCACAUCACACUGCU	chr12:9254115-9254363(-)$1	248	154	171	15.0152
CCGCUGCCAUGAAGGGG	chr2:216296558-216296782(-)$1	224	96	113	13.3219
CUGUUAUCUCUUAAAUA	chr3:133486782-133487025(+)$1	243	18	35	15.2999
AGGCAAGAAGUCCUGCC	chr3:133473379-133473612(+)$1	233	29	46	14.3105
GUCAAUGAAUUGUUUGA	chrX:132887834-132888059(-)$1	225	17	34	15.0243
CGUGGGUUCCAAAUUAA	chr2:21237875-21238121(-)$1	246	155	172	13.3479
UGCUUCCAAACAAAGGU	chr4:74307937-74308156(+)$1	219	193	210	14.1820
UUCGGGCUCGUUACCAC	chr2:21236049-21236320(-)$1	271	226	243	12.7615
UGGGCAGUUCAGAGUCU	chr2:21235140-21235361(-)$1	221	82	99	15.2579
CAAGGUAUGUUUUCCUU	chr4:155527772-155528113(-)$1	341	253	270	15.0722
GAGGUCUCAAGAAACCU	chr4:74283154-74283398(+)$1	244	148	165	15.0152
CCGCUGCCAUGAAGGGG	chr2:216296524-216296743(-)$1	219	57	74	13.3219
CUGGGAAGUAUGACCUG	chr1:8925406-8925641(-)$1	235	193	210	12.9061
CCCACCCCAUCCAGUGG	chr2:216279559-216279781(-)$1	222	154	171	15.0152
AGUCCUGAGAGAUGGAC	chr2:216262410-216262650(-)$1	240	192	209	15.2999
AACGGUGGAAGGUCCGU	chr3:58108853-58109129(+)$1	276	64	81	15.2579
GUAAAUGAAAGAUUUUA	chr2:21237233-21237455(-)$1	222	176	193	14.1820
AGGCCAUCUCCUGGGCC	chr19:49993125-49993359(+)$1	234	1	18	14.3105
AGGGCAGUAGCUCGCCU	chr4:74277679-74277901(+)$1	222	31	48	15.0722
UCUACCCAGGCAAGUGG	chr19:6686078-6686295(-)$1	217	152	169	14.1820
UGCCUGUUGCCAAAGGU	chr4:74275071-74275294(+)$1	223	118	135	14.1820
AGCCCACCAAGAAGGGC	chr2:216241200-216241433(-)$1	233	41	58	14.1820
UAUCUAGGGAAGAGGGU	chr4:74309045-74309261(+)$1	216	130	147	14.9231
CCUCCGCAUCUUGGGAG	chr2:21247804-21248082(-)$1	278	169	186	14.3105
GUAAAUGAAAGAUUUUA	chr2:21237221-21237433(-)$1	212	154	171	14.1820
UGAUGGAUGGAUGCAUA	chr1:116940490-116940761(+)$1	271	249	266	13.5269
AUAGCUUAACAUUGCUA	chr22:39714966-39715194(-)$1	228	205	222	15.2738
GAGCUGAAUGCAGAGCU	chr2:21234713-21234936(-)$1	223	204	221	14.1820
AAGGGGUCAUGUACCGC	chr2:216286743-216286956(-)$1	213	17	34	12.7974
UCUAUGCCCAAAGGUAG	chrX:132730367-132730643(-)$1	276	31	48	14.1820
AGGCACAUCACACUGCU	chr12:9254015-9254284(-)$1	269	75	92	15.0152
CCGCUGCCAUGAAGGGG	chr2:216296486-216296715(-)$1	229	29	46	13.3219
ACAAGGACUGCCACUUG	chr3:133475573-133475784(+)$1	211	179	196	14.3105

#DB
(((((........))))	chr17:27050617-27050837(+)$1	1	188	205	14.1820
(((((........))..	chr2:21236022-21236249(-)$1	1	155	172	12.7615
((.((........)).)	chr2:216298011-216298229(-)$1	1	72	89	13.3219
.((((........))))	chr2:216283867-216284084(-)$1	1	111	128	15.2579
(((((........))))	chr2:21226096-21226306(-)$1	1	65	82	14.1820
..(((........))))	chr4:74318178-74318438(+)$1	1	216	233	13.6302
(.(((........))).	chr2:21237974-21238216(-)$1	1	71	88	12.9508
...((........)).)	chr2:216286792-216287029(-)$1	1	90	107	12.7974
(((((........))))	chr2:21234692-21234913(-)$1	1	181	198	14.1820
(.(((........))).	chr1:116941175-116941446(+)$1	1	212	229	13.1335
.((((........))))	chr2:216251534-216251750(-)$1	1	164	181	14.3105
(((((........))))	chr2:21237282-21237516(-)$1	1	29	46	14.1820
(((((........))))	chr12:9242867-9243095(-)$1	1	101	118	14.1820
.((((........))))	chr3:133472373-133472645(+)$1	1	170	187	15.0722
)((((........))))	chr4:74283198-74283424(+)$1	1	104	121	15.0152
.((((........))))	chr2:21235234-21235472(-)$1	1	193	210	15.2579
.((((........))))	chr6:160479844-160480079(+)$1	1	88	105	14.3105
(((((........))))	chr4:74309035-74309245(+)$1	1	140	157	14.9231
(..((........)).)	chr2:216248759-216248990(-)$1	1	144	161	12.6680
.((((........))))	chr2:21237947-21238174(-)$1	1	95	112	15.2738
.((((........))))	chr9:124091418-124091661(+)$1	1	225	242	14.3105
(((((........))))	chr4:74275026-74275236(+)$1	1	163	180	14.1820
(..((........)).)	chr2:216248790-216249006(-)$1	1	160	177	12.6680
(((((........))))	chr1:116931423-116931644(+)$1	1	41	58	14.1820
.((((........))))	chr2:216283884-216284156(-)$1	1	183	200	15.2579
.((((........))))	chr1:116931221-116931493(+)$1	1	120	137	15.2579
.((((........))))	chr2:216262366-216262610(-)$1	1	84	101	15.2579
..(((........))).	chr16:74640521-74640771(-)$1	1	222	239	12.4505
(((((........))..	chr2:21235935-21236182(-)$1	1	88	105	12.7615
.((((........))))	chr2:216248012-216248246(-)$1	1	23	40	15.2579
(((((........))))	chr4:74275094-74275304(+)$1	1	95	112	14.1820
(((((........))))	chr17:1678360-1678590(+)$1	1	92	109	12.7741
(((((........))))	chr1:116939121-116939365(+)$1	1	162	179	14.1820
.((((........))))	chr12:9224865-9225141(-)$1	1	149	166	15.0722
(((((........))))	chr4:74275000-74275226(+)$1	1	189	206	14.1820
...((........)).)	chr2:216286861-216287066(-)$1	1	127	144	12.7974
(((((........))))	chr2:21237361-21237565(-)$1	1	78	95	14.1820
..(((........))).	chr2:216296455-216296686(-)$1	1	103	120	12.9029
.((((........))))	chr2:21237316-21237527(-)$1	1	144	161	14.3105
(((((........))))	chr12:9254115-9254363(-)$1	1	154	171	15.0152
((.((........)).)	chr2:216296558-216296782(-)$1	1	96	113	13.3219
.((((........))))	chr3:133486782-133487025(+)$1	1	18	35	15.2999
.((((........))))	chr3:133473379-133473612(+)$1	1	29	46	14.3105
(((((........))))	chrX:132887834-132888059(-)$1	1	17	34	15.0243
..(((........))).	chr2:21237875-21238121(-)$1	1	155	172	13.3479
(((((........))))	chr4:74307937-74308156(+)$1	1	193	210	14.1820
(((((........))..	chr2:21236049-21236320(-)$1	1	226	243	12.7615
.((((........))))	chr2:21235140-21235361(-)$1	1	82	99	15.2579
.((((........))))	chr4:155527772-155528113(-)$1	1	253	270	15.0722
)((((........))))	chr4:74283154-74283398(+)$1	1	148	165	15.0152
((.((........)).)	chr2:216296524-216296743(-)$1	1	57	74	13.3219
(((((........))))	chr1:8925406-8925641(-)$1	1	193	210	12.9061
)((((........))))	chr2:216279559-216279781(-)$1	1	154	171	15.0152
.((((........))))	chr2:216262410-216262650(-)$1	1	192	209	15.2999
.((((........))))	chr3:58108853-58109129(+)$1	1	64	81	15.2579
(((((........))))	chr2:21237233-21237455(-)$1	1	176	193	14.1820
.((((........))))	chr19:49993125-49993359(+)$1	1	1	18	14.3105
.((((........))))	chr4:74277679-74277901(+)$1	1	31	48	15.0722
(((((........))))	chr19:6686078-6686295(-)$1	1	152	169	14.1820
(((((........))))	chr4:74275071-74275294(+)$1	1	118	135	14.1820
(((((........))))	chr2:216241200-216241433(-)$1	1	41	58	14.1820
(((((........))))	chr4:74309045-74309261(+)$1	1	130	147	14.9231
.((((........))))	chr2:21247804-21248082(-)$1	1	169	186	14.3105
(((((........))))	chr2:21237221-21237433(-)$1	1	154	171	14.1820
((.((........))))	chr1:116940490-116940761(+)$1	1	249	266	13.5269
.((((........))))	chr22:39714966-39715194(-)$1	1	205	222	15.2738
(((((........))))	chr2:21234713-21234936(-)$1	1	204	221	14.1820
...((........)).)	chr2:216286743-216286956(-)$1	1	17	34	12.7974
(((((........))))	chrX:132730367-132730643(-)$1	1	31	48	14.1820
(((((........))))	chr12:9254015-9254284(-)$1	1	75	92	15.0152
((.((........)).)	chr2:216296486-216296715(-)$1	1	29	46	13.3219
.((((........))))	chr3:133475573-133475784(+)$1	1	179	196	14.3105

#PSSM
e : 0.26	d : 0.15	[ : 0.11	: : 0.11	" : 0.09	$ : 0.06	i : 0.05	f : 0.05	! : 0.02	# : 0.01	b : 0.01	g : 0.01	c : 0.01	
d : 0.51	e : 0.26	" : 0.06	i : 0.05	[ : 0.02	! : 0.02	# : 0.01	$ : 0.01	g : 0.01	
d : 0.44	e : 0.26	c : 0.08	[ : 0.06	i : 0.05	" : 0.04	! : 0.02	g : 0.01	
d : 0.44	e : 0.26	b : 0.18	c : 0.08	g : 0.01	i : 0.01	
d : 0.44	e : 0.26	b : 0.18	c : 0.08	g : 0.01	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.44	e : 0.26	b : 0.18	c : 0.08	g : 0.01	i : 0.01	
d : 0.44	e : 0.26	b : 0.18	c : 0.08	g : 0.01	i : 0.01	
d : 0.45	e : 0.26	] : 0.12	c : 0.08	4 : 0.04	g : 0.01	i : 0.01	
d : 0.52	e : 0.26	f : 0.06	4 : 0.04	] : 0.02	6 : 0.02	g : 0.01	3 : 0.01	i : 0.01	

#score	1020.3134567378261
#seq	72
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_CDS_m1_run1.txt

#BEAR
eeee[bbwwwwwwwwwwwwwwbb]eeeee	chr20:3888453-3888733(+)$1	280	189	218	21.2292
gggggggvvvvvvvvvvvvvggggggg::	chr6:31657350-31657595(-)$1	245	153	182	19.8993
[ffffffvvvvvvvvvvvvvffffff22c	chr1:172520521-172520778(+)$1	257	177	206	20.2398
iiiiiiiuuuuuuuuuuuuiiiiiiiii:	chr16:88783886-88784138(-)$1	252	218	247	20.8832
"cccyyyyyyyyyyyyyyyyccc22====	chr3:43743598-43743838(+)$1	240	116	145	23.4635
gggggggxxxxxxxxxxxxxxxggggggg	chr6:143486107-143486379(+)$1	272	132	161	21.0129
gggggggxxxxxxxxxxxxxxxggggggg	chr11:9309172-9309416(-)$1	244	165	194	21.0129
hh^^^^^^^^^^^^^^^^^^^^hhhhhhh	chr18:23663987-23664248(-)$1	261	171	200	21.3160
====^^^^^^^^^^^^^^^^^^=======	chr22:22142961-22143196(-)$1	235	155	184	23.0696
"ccc[avvvvvvvvvvvvvaccc22eeee	chr2:61463061-61463313(-)$1	252	29	58	21.5842
ddddyyyyyyyyyyyyyyyydddd22ccc	chr1:212141904-212142160(-)$1	256	24	53	22.1448
====^^^^^^^^^^^^^^^^^^=======	chr17:27614605-27614852(-)$1	247	28	57	23.0696
cc[cccwwwwwwwwwwwwwwccc]ccc]g	chr17:4579947-4580220(-)$1	273	120	149	22.1579
c[eeeeevvvvvvvvvvvvveeeeecccG	chr2:69553228-69553475(-)$1	247	162	191	20.8410
[bb!!bbuuuuuuuuuuuubb22bb333d	chr1:153719637-153719919(+)$1	282	105	134	20.1773
feeeeewwwwwwwwwwwwwweeeee:ddd	chr16:24741465-24741755(+)$1	290	162	191	20.4981
ffffffyyyyyyyyyyyyyyyyffffff:	chr2:220099438-220099687(+)$1	249	2	31	21.9884
^^^^^^^^^^^^^^^^^^^^^^ccc]ggg	chr11:47786757-47787024(-)$1	267	90	119	22.6330
=======uuuuuuuuuuuu==========	chr3:156266641-156266906(-)$1	265	104	133	22.6500
eeee[bbuuuuuuuuuuuubb]eeeee]c	chr2:24086271-24086531(-)$1	260	82	111	21.5614
ddd!!bbuuuuuuuuuuuubb333dddd]	chr2:32695132-32695373(+)$1	241	59	88	20.7291
=======uuuuuuuuuuuu==========	chr12:121248549-121248802(-)$1	253	33	62	22.6500
ggggggyyyyyyyyyyyyyyyyggggggg	chr17:48829442-48829706(+)$1	264	42	71	24.5932
ff^^^^^^^^^^^^^^^^^^^^^ffffff	chr13:39600385-39600651(-)$1	266	90	119	21.5189
c[fffffftttttttttttffffff]ccc	chr15:68434183-68434432(+)$1	249	85	114	17.6781
^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr17:57915496-57915835(+)$1	339	96	125	22.9517
hhhhhhyyyyyyyyyyyyyyyyhhhhhhh	chr6:83896645-83896907(-)$1	262	205	234	21.6318
^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr6:32086509-32086769(-)$1	260	183	212	21.8840
hhhh!!auuuuuuuuuuuua22hhhhhhh	chr21:33064603-33064866(-)$1	263	124	153	20.8298
ffffffyyyyyyyyyyyyyyyyffffff3	chr8:8861472-8861727(+)$1	255	210	239	22.9319
!!eeeeevvvvvvvvvvvvveeeee22dd	chr3:100025173-100025424(+)$1	251	71	100	21.2441
gggggggvvvvvvvvvvvvvggggggg44	chr17:34160797-34161048(+)$1	251	153	182	21.6958
ggggggggtttttttttttggggggg22g	chr5:32415147-32415400(-)$1	253	21	50	18.5584
eeee^^^^^^^^^^^^^^^^^^eeeeebb	chr15:80137644-80137897(-)$1	253	29	58	21.8437
========ttttttttttt==========	chr14:23535073-23535330(-)$1	257	213	242	19.8005
d[ddddyyyyyyyyyyyyyyyydddd]dd	chr11:70255815-70256065(+)$1	250	37	66	22.7955
eeeeyyyyyyyyyyyyyyyyeeeee22ii	chr3:47147473-47147767(-)$1	294	93	122	23.3032
c!!ddddxxxxxxxxxxxxxxxdddd22c	chr4:139101821-139102059(-)$1	238	91	120	19.4878
eee^^^^^^^^^^^^^^^^^^^eeeee==	chr5:167922174-167922448(+)$1	274	121	150	22.6716
ff^^^^^^^^^^^^^^^^^^^^ffffff]	chr9:95033802-95034065(-)$1	263	105	134	21.8935
c!!eeeeettttttttttteeeee22ccc	chr7:12410293-12410601(-)$1	308	183	212	18.4586
d[eeeeeuuuuuuuuuuuueeeee]dddd	chr15:25584269-25584528(-)$1	259	64	93	20.8978
gggg^^^^^^^^^^^^^^^^^^ggggggg	chr6:90489869-90490120(-)$1	251	194	223	22.9052
ggggggguuuuuuuuuuuuggggggg::d	chr5:118469072-118469357(+)$1	285	94	123	19.5467
$$$dddduuuuuuuuuuuudddd333bbc	chr6:131924212-131924459(-)$1	247	198	227	19.6783
^^^^^^^^^^^^^^^^^^^^^^hhhhhhh	chr6:158294025-158294292(+)$1	267	67	96	21.6877
eeeeeeexxxxxxxxxxxxxxxeeeee]e	chr3:156874735-156874993(-)$1	258	3	32	20.4430
eeeecccuuuuuuuuuuuuccc]eeeeed	chr1:109890016-109890271(-)$1	255	31	60	21.6416
^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr1:26799863-26800132(+)$1	269	71	100	22.9517
!!ddddwwwwwwwwwwwwwwddddeeeee	chr6:79911316-79911555(-)$1	239	152	181	21.4296
"ccc[bbuuuuuuuuuuuubb]ccc]ddd	chr11:62430667-62430919(-)$1	252	145	174	21.0440
^^^^^^^^^^^^^^^^^^^^^^eeeee>>	chr12:53567422-53567696(-)$1	274	78	107	22.1300
^^^^^^^^^^^^^^^^^^^^^^ccc]eee	chr4:24538634-24538871(-)$1	237	175	204	22.3606
[bb[ccctttttttttttccc]bb333ee	chr1:59137483-59137731(-)$1	248	134	163	17.8118
^^^^^^^^^^^^^^^^^^^^^^eeeee]d	chrX:129283413-129283656(-)$1	243	137	166	22.6143
ggg^^^^^^^^^^^^^^^^^^^ggggggg	chr6:160200687-160200931(-)$1	244	57	86	23.0415
:eeeeeyyyyyyyyyyyyyyyyeeeee::	chr10:101372221-101372468(-)$1	247	0	29	21.1190
ggggggwwwwwwwwwwwwwwggggggg22	chr5:150121569-150121822(-)$1	253	69	98	22.1628
=======vvvvvvvvvvvvv=========	chr7:26237216-26237463(-)$1	247	152	181	22.5532
eee^^^^^^^^^^^^^^^^^^^eeeee==	chr5:167922248-167922508(+)$1	260	47	76	22.6716
d[ddddwwwwwwwwwwwwwwdddd]dddd	chr12:123641323-123641572(-)$1	249	171	200	20.7172
^^^^^^^^^^^^^^^^^^^^=========	chr12:123001866-123002079(-)$1	213	61	90	21.9587
ee!!ddddtttttttttttdddd22eeee	chr6:155108857-155109143(+)$1	286	224	253	17.6371
^^^^^^^^^^^^^^^^^^^^ffffffccc	chr5:158596681-158596936(-)$1	255	81	110	20.8352
ggggggvvvvvvvvvvvvvggggggghhh	chrX:13337380-13337648(+)$1	268	106	135	21.1135
fff^^^^^^^^^^^^^^^^^^^ffffff]	chr1:160208395-160208655(-)$1	260	36	65	21.7419
!eeeeeyyyyyyyyyyyyyyyyeeeee22	chr9:134067483-134067736(+)$1	253	171	200	23.9313
hhhh^^^^^^^^^^^^^^^^^^^hhhhhh	chr4:25415979-25416226(+)$1	247	83	112	20.4968

#otherMatches

#Seq PSSM
CACUGCUGAAGAAGAAGAGGAAGAAGUGG	chr20:3888453-3888733(+)$1	280	189	218	21.2292
GUGGUGGUCCAGUUUGCCAUCCACCGCCU	chr6:31657350-31657595(-)$1	245	153	182	19.8993
CGUCAUCAUAUUACUCUCAAGAUGACAAC	chr1:172520521-172520778(+)$1	257	177	206	20.2398
gcaggaguugcguuucauucuccugccug	chr16:88783886-88784138(-)$1	252	218	247	20.8832
UGCACAUACAAAAAAGAACCUGUUCGUAU	chr3:43743598-43743838(+)$1	240	116	145	23.4635
AUCAUUUAUGCCUAUGACAGAGAGAUGAU	chr6:143486107-143486379(+)$1	272	132	161	21.0129
CAGGUAAACAUGUAUUUUUAAAUUAUUUG	chr11:9309172-9309416(-)$1	244	165	194	21.0129
uuacuuauuuucuuauaccacaaaauguu	chr18:23663987-23664248(-)$1	261	171	200	21.3160
UUCUAACAGGCCCAUCUUUCCAGGGAAGC	chr22:22142961-22143196(-)$1	235	155	184	23.0696
AUGAACUUUAAAUAAUUCUGUCAAAAUUU	chr2:61463061-61463313(-)$1	252	29	58	21.5842
ACCACAAACUGAUAAAUACUUGGUACUGC	chr1:212141904-212142160(-)$1	256	24	53	22.1448
gcauacaguaaauaguucuuaaauguuag	chr17:27614605-27614852(-)$1	247	28	57	23.0696
UGGCCUCAUUUUUUCUGUCUAGGGUGGAU	chr17:4579947-4580220(-)$1	273	120	149	22.1579
CUAUACAAAAUGUACGAAACUGUAUGAUU	chr2:69553228-69553475(-)$1	247	162	191	20.8410
UCUUUCCUUUAGUUGGUGUGGUUGGUACG	chr1:153719637-153719919(+)$1	282	105	134	20.1773
UGGGCGAGCUUUCCGUCUCCCGCCCCACG	chr16:24741465-24741755(+)$1	290	162	191	20.4981
GGGUGACAAAAUAAAAACAAUUUCAUUUC	chr2:220099438-220099687(+)$1	249	2	31	21.9884
uuucuuuuuuuuuAAUCCAGAUGAACAGG	chr11:47786757-47787024(-)$1	267	90	119	22.6330
UUUCUUCCAGAGUAGCACAGAAGAGGGAG	chr3:156266641-156266906(-)$1	265	104	133	22.6500
UUCUUGAUUUUUUUAUUCUUCUAGGGGCU	chr2:24086271-24086531(-)$1	260	82	111	21.5614
GAAUUGAUUCUUAUUCUUUUCUUUUUUGU	chr2:32695132-32695373(+)$1	241	59	88	20.7291
UUUAUAGAAcuccauuagacuguaagcuc	chr12:121248549-121248802(-)$1	253	33	62	22.6500
GGCCAACACUUUCUCAUAAAAAUUGGCCU	chr17:48829442-48829706(+)$1	264	42	71	24.5932
AAUUUUUUUCCUACCCCUCUUCUUUCUUA	chr13:39600385-39600651(-)$1	266	90	119	21.5189
UCUUGUCUUCUUUAGCAUCAGACAACAGU	chr15:68434183-68434432(+)$1	249	85	114	17.6781
CGUUUUUCCUGCUUUUCUUCCCAAAUGUG	chr17:57915496-57915835(+)$1	339	96	125	22.9517
auuaaacuaauauuuaaaaaacuuuaauu	chr6:83896645-83896907(-)$1	262	205	234	21.6318
CUUCUCUUCAUUGCCUUCAACUUUGGACC	chr6:32086509-32086769(-)$1	260	183	212	21.8840
GUGGGGCAGCUGGACAAAAGAACUACUCA	chr21:33064603-33064866(-)$1	263	124	153	20.8298
GCAAUUAUCUUUCUCCUUCUAAGGUUGUU	chr8:8861472-8861727(+)$1	255	210	239	22.9319
UUUUAGGUUUUUCUUUUUUUUUUAAUUUA	chr3:100025173-100025424(+)$1	251	71	100	21.2441
UGCUGAGUAUCCCAAAAUGUUUCAGUGGA	chr17:34160797-34161048(+)$1	251	153	182	21.6958
CUAUUCUUUCCAGCUUUUUAAGGAUACUG	chr5:32415147-32415400(-)$1	253	21	50	18.5584
AUGUCAUUACAAAACAAAAAACACAUCCU	chr15:80137644-80137897(-)$1	253	29	58	21.8437
AUUGAGAACCAGAAUUUCAUUCUCAAUGG	chr14:23535073-23535330(-)$1	257	213	242	19.8005
CACCUGUUCUUAUUUAUCAUACCAGGAGG	chr11:70255815-70256065(+)$1	250	37	66	22.7955
AGCAUAUAUGUUUUCCCUACUGCUCCUAG	chr3:47147473-47147767(-)$1	294	93	122	23.3032
GCUUGCUUCCCUUUCCCCCCUCAGCACCC	chr4:139101821-139102059(-)$1	238	91	120	19.4878
CCUUUCUCUUUUUGUCUACCCCAGGUUAU	chr5:167922174-167922448(+)$1	274	121	150	22.6716
CCCUCUCUUUUGCCUUUUCUCAGGAGGAC	chr9:95033802-95034065(-)$1	263	105	134	21.8935
CCUAGUGUAGAUUACAGAAACACUCUGGG	chr7:12410293-12410601(-)$1	308	183	212	18.4586
UCUAAGUGUAUUUCCCAUGACUUACAGUU	chr15:25584269-25584528(-)$1	259	64	93	20.8978
GAUAUAGUUUUCCAGUCUUUUUUGUCUUG	chr6:90489869-90490120(-)$1	251	194	223	22.9052
ACACUUGCUUUCUUGAUUCUAGGUGUCCU	chr5:118469072-118469357(+)$1	285	94	123	19.5467
CAUAUUCAGCCUCAUUACAGAGUUCAGCU	chr6:131924212-131924459(-)$1	247	198	227	19.6783
GUAAUCUUUUUCUUUUUUUUUUUUUUUUG	chr6:158294025-158294292(+)$1	267	67	96	21.6877
GCCUUUUUUUAAAGCAGGAUGUAAAAGUG	chr3:156874735-156874993(-)$1	258	3	32	20.4430
ACCUGCUAGGAAGUUUGUGAGUAAGGUCA	chr1:109890016-109890271(-)$1	255	31	60	21.6416
ACCUCAAAAUCUGCAGUUUUUUGUUCUUG	chr1:26799863-26800132(+)$1	269	71	100	22.9517
UUGUCAUGAAAAAUUGGGGUUGAUUUUAU	chr6:79911316-79911555(-)$1	239	152	181	21.4296
GGGAAGAAGCGCAGAAAACUCCUCCAGCA	chr11:62430667-62430919(-)$1	252	145	174	21.0440
aaaaacacuuaauuguacacuuuUCACCC	chr12:53567422-53567696(-)$1	274	78	107	22.1300
CGUCUACCAUGCUUUUAAACAAAGUAAGU	chr4:24538634-24538871(-)$1	237	175	204	22.3606
GAAGAGGAAAAAGGCAGACCUGUUAAAUC	chr1:59137483-59137731(-)$1	248	134	163	17.8118
GAAAAAAGAUACAAUGAAAGAAUUUCAGG	chrX:129283413-129283656(-)$1	243	137	166	22.6143
UCAAUUUUUUUUUUCCCUUUUGUGAAGUC	chr6:160200687-160200931(-)$1	244	57	86	23.0415
CGUUACUUUUCCCCGCUGUAGUGUAGCAC	chr10:101372221-101372468(-)$1	247	0	29	21.1190
UGAAAGUCUUGUUUAAUAUUCUUUUAUUU	chr5:150121569-150121822(-)$1	253	69	98	22.1628
AAGCUUUGAAACCACAGAAGAAAGUUUGA	chr7:26237216-26237463(-)$1	247	152	181	22.5532
CCUUUCUCUUUUUGUCUACCCCAGGUUAU	chr5:167922248-167922508(+)$1	260	47	76	22.6716
AUGACGCUAAAGAAAUUCCAUGUUUUGCG	chr12:123641323-123641572(-)$1	249	171	200	20.7172
CAACUUUUAAGUAAUUACAAAUUUGUGCA	chr12:123001866-123002079(-)$1	213	61	90	21.9587
GUGUUUGCACCCAGAUUUAGUAAUAACAU	chr6:155108857-155109143(+)$1	286	224	253	17.6371
CUGUUAAUUUCCCCCUCUUUUUUUCCAGU	chr5:158596681-158596936(-)$1	255	81	110	20.8352
UGGUGUAUCCAUCUCUUCGACACUGAUGA	chrX:13337380-13337648(+)$1	268	106	135	21.1135
AGGUCAUCAUCGUAUUUUUUAUUCUCAAG	chr1:160208395-160208655(-)$1	260	36	65	21.7419
AGCCUUUCUCAUUUUCUCCAUCAGGGUCA	chr9:134067483-134067736(+)$1	253	171	200	23.9313
CAUUUCUUUUUCCCUUUUAUUUUAGUGAG	chr4:25415979-25416226(+)$1	247	83	112	20.4968

#DB
((((.((..............)).)))))	chr20:3888453-3888733(+)$1	1	189	218	21.2292
(((((((.............)))))))..	chr6:31657350-31657595(-)$1	1	153	182	19.8993
.((((((.............))))))..)	chr1:172520521-172520778(+)$1	1	177	206	20.2398
(((((((............))))))))).	chr16:88783886-88784138(-)$1	1	218	247	20.8832
.(((................)))..))))	chr3:43743598-43743838(+)$1	1	116	145	23.4635
(((((((...............)))))))	chr6:143486107-143486379(+)$1	1	132	161	21.0129
(((((((...............)))))))	chr11:9309172-9309416(-)$1	1	165	194	21.0129
((....................)))))))	chr18:23663987-23664248(-)$1	1	171	200	21.3160
((((..................)))))))	chr22:22142961-22143196(-)$1	1	155	184	23.0696
.(((.(.............))))..))))	chr2:61463061-61463313(-)$1	1	29	58	21.5842
((((................))))..)))	chr1:212141904-212142160(-)$1	1	24	53	22.1448
((((..................)))))))	chr17:27614605-27614852(-)$1	1	28	57	23.0696
((.(((..............))).))).)	chr17:4579947-4580220(-)$1	1	120	149	22.1579
(.(((((.............)))))))))	chr2:69553228-69553475(-)$1	1	162	191	20.8410
.((..((............))..))...)	chr1:153719637-153719919(+)$1	1	105	134	20.1773
)(((((..............))))).(((	chr16:24741465-24741755(+)$1	1	162	191	20.4981
((((((................)))))).	chr2:220099438-220099687(+)$1	1	2	31	21.9884
......................))).)))	chr11:47786757-47787024(-)$1	1	90	119	22.6330
(((((((............))))))))))	chr3:156266641-156266906(-)$1	1	104	133	22.6500
((((.((............)).))))).)	chr2:24086271-24086531(-)$1	1	82	111	21.5614
(((..((............))...)))).	chr2:32695132-32695373(+)$1	1	59	88	20.7291
(((((((............))))))))))	chr12:121248549-121248802(-)$1	1	33	62	22.6500
((((((................)))))))	chr17:48829442-48829706(+)$1	1	42	71	24.5932
((.....................))))))	chr13:39600385-39600651(-)$1	1	90	119	21.5189
(.((((((...........)))))).)))	chr15:68434183-68434432(+)$1	1	85	114	17.6781
......................)))))))	chr17:57915496-57915835(+)$1	1	96	125	22.9517
((((((................)))))))	chr6:83896645-83896907(-)$1	1	205	234	21.6318
........................)))))	chr6:32086509-32086769(-)$1	1	183	212	21.8840
((((..(............)..)))))))	chr21:33064603-33064866(-)$1	1	124	153	20.8298
((((((................)))))).	chr8:8861472-8861727(+)$1	1	210	239	22.9319
..(((((.............)))))..))	chr3:100025173-100025424(+)$1	1	71	100	21.2441
(((((((.............)))))))..	chr17:34160797-34161048(+)$1	1	153	182	21.6958
((((((((...........)))))))..)	chr5:32415147-32415400(-)$1	1	21	50	18.5584
((((..................)))))))	chr15:80137644-80137897(-)$1	1	29	58	21.8437
((((((((...........))))))))))	chr14:23535073-23535330(-)$1	1	213	242	19.8005
(.((((................)))).))	chr11:70255815-70256065(+)$1	1	37	66	22.7955
((((................)))))..))	chr3:47147473-47147767(-)$1	1	93	122	23.3032
(..((((...............))))..)	chr4:139101821-139102059(-)$1	1	91	120	19.4878
(((...................)))))((	chr5:167922174-167922448(+)$1	1	121	150	22.6716
((....................)))))).	chr9:95033802-95034065(-)$1	1	105	134	21.8935
(..(((((...........)))))..)))	chr7:12410293-12410601(-)$1	1	183	212	18.4586
(.(((((............))))).))))	chr15:25584269-25584528(-)$1	1	64	93	20.8978
((((..................)))))))	chr6:90489869-90490120(-)$1	1	194	223	22.9052
(((((((............)))))))..(	chr5:118469072-118469357(+)$1	1	94	123	19.5467
...((((............))))...)))	chr6:131924212-131924459(-)$1	1	198	227	19.6783
......................)))))))	chr6:158294025-158294292(+)$1	1	67	96	21.6877
(((((((...............))))).)	chr3:156874735-156874993(-)$1	1	3	32	20.4430
(((((((............))).))))))	chr1:109890016-109890271(-)$1	1	31	60	21.6416
......................)))))))	chr1:26799863-26800132(+)$1	1	71	100	22.9517
..((((..............)))))))))	chr6:79911316-79911555(-)$1	1	152	181	21.4296
.(((.((............)).))).)))	chr11:62430667-62430919(-)$1	1	145	174	21.0440
......................)))))..	chr12:53567422-53567696(-)$1	1	78	107	22.1300
......................))).)))	chr4:24538634-24538871(-)$1	1	175	204	22.3606
.((.(((...........))).))...))	chr1:59137483-59137731(-)$1	1	134	163	17.8118
......................))))).)	chrX:129283413-129283656(-)$1	1	137	166	22.6143
(((...................)))))))	chr6:160200687-160200931(-)$1	1	57	86	23.0415
.(((((................)))))..	chr10:101372221-101372468(-)$1	1	0	29	21.1190
((((((..............)))))))..	chr5:150121569-150121822(-)$1	1	69	98	22.1628
(((((((.............)))))))))	chr7:26237216-26237463(-)$1	1	152	181	22.5532
(((...................)))))((	chr5:167922248-167922508(+)$1	1	47	76	22.6716
(.((((..............)))).))))	chr12:123641323-123641572(-)$1	1	171	200	20.7172
....................)))))))))	chr12:123001866-123002079(-)$1	1	61	90	21.9587
((..((((...........))))..))))	chr6:155108857-155109143(+)$1	1	224	253	17.6371
....................))))))(((	chr5:158596681-158596936(-)$1	1	81	110	20.8352
((((((.............)))))))(((	chrX:13337380-13337648(+)$1	1	106	135	21.1135
(((...................)))))).	chr1:160208395-160208655(-)$1	1	36	65	21.7419
.(((((................)))))..	chr9:134067483-134067736(+)$1	1	171	200	23.9313
((((...................))))))	chr4:25415979-25416226(+)$1	1	83	112	20.4968

#PSSM
g : 0.16	^ : 0.14	e : 0.13	= : 0.08	f : 0.08	d : 0.07	c : 0.07	h : 0.05	[ : 0.04	" : 0.04	! : 0.04	i : 0.01	$ : 0.01	: : 0.01	
e : 0.17	g : 0.16	^ : 0.14	f : 0.08	= : 0.08	[ : 0.07	c : 0.05	h : 0.05	! : 0.05	d : 0.02	b : 0.02	i : 0.01	$ : 0.01	
e : 0.20	^ : 0.19	g : 0.16	= : 0.08	f : 0.07	d : 0.07	c : 0.04	h : 0.04	! : 0.04	b : 0.02	i : 0.01	[ : 0.01	$ : 0.01	
^ : 0.25	e : 0.19	g : 0.14	= : 0.08	d : 0.08	f : 0.05	c : 0.05	! : 0.04	h : 0.04	i : 0.01	[ : 0.01	
^ : 0.32	g : 0.13	e : 0.11	d : 0.08	[ : 0.05	f : 0.05	= : 0.05	y : 0.04	c : 0.04	! : 0.04	i : 0.01	h : 0.01	
^ : 0.32	g : 0.13	e : 0.11	d : 0.08	b : 0.07	f : 0.05	= : 0.05	y : 0.04	c : 0.04	i : 0.01	a : 0.01	h : 0.01	! : 0.01	
^ : 0.32	y : 0.14	g : 0.08	b : 0.07	w : 0.07	e : 0.07	= : 0.05	d : 0.04	f : 0.02	v : 0.02	c : 0.02	i : 0.01	a : 0.01	
^ : 0.32	u : 0.17	y : 0.14	v : 0.11	w : 0.08	x : 0.05	f : 0.01	g : 0.01	= : 0.01	e : 0.01	t : 0.01	d : 0.01	
^ : 0.32	u : 0.17	y : 0.14	v : 0.11	w : 0.08	t : 0.08	x : 0.05	
^ : 0.32	u : 0.17	y : 0.14	v : 0.11	w : 0.08	t : 0.08	x : 0.05	
^ : 0.32	u : 0.17	y : 0.14	v : 0.11	w : 0.08	t : 0.08	x : 0.05	
^ : 0.32	u : 0.17	y : 0.14	v : 0.11	w : 0.08	t : 0.08	x : 0.05	
^ : 0.32	u : 0.17	y : 0.14	v : 0.11	w : 0.08	t : 0.08	x : 0.05	
^ : 0.32	u : 0.17	y : 0.14	v : 0.11	w : 0.08	t : 0.08	x : 0.05	
^ : 0.32	u : 0.17	y : 0.14	v : 0.11	w : 0.08	t : 0.08	x : 0.05	
^ : 0.32	u : 0.17	y : 0.14	v : 0.11	w : 0.08	t : 0.08	x : 0.05	
^ : 0.32	u : 0.17	y : 0.14	v : 0.11	w : 0.08	t : 0.08	x : 0.05	
^ : 0.32	u : 0.17	y : 0.14	v : 0.11	w : 0.08	t : 0.08	x : 0.05	
^ : 0.32	u : 0.17	y : 0.14	v : 0.11	w : 0.08	t : 0.07	x : 0.05	c : 0.01	
^ : 0.32	y : 0.14	w : 0.08	v : 0.08	x : 0.05	b : 0.05	= : 0.04	g : 0.04	a : 0.02	e : 0.02	d : 0.02	c : 0.02	i : 0.01	f : 0.01	
^ : 0.29	y : 0.10	g : 0.08	e : 0.08	c : 0.07	d : 0.07	= : 0.07	x : 0.05	b : 0.05	f : 0.04	w : 0.01	i : 0.01	2 : 0.01	
^ : 0.29	y : 0.10	g : 0.08	e : 0.08	d : 0.07	= : 0.07	c : 0.05	x : 0.05	f : 0.04	] : 0.04	2 : 0.02	b : 0.01	i : 0.01	3 : 0.01	
e : 0.22	g : 0.19	f : 0.10	= : 0.10	d : 0.10	c : 0.08	h : 0.05	^ : 0.04	b : 0.02	i : 0.01	2 : 0.01	3 : 0.01	] : 0.01	
e : 0.23	g : 0.19	f : 0.11	= : 0.10	h : 0.07	d : 0.07	2 : 0.04	c : 0.04	] : 0.02	b : 0.02	3 : 0.02	i : 0.01	^ : 0.01	
e : 0.25	g : 0.19	f : 0.11	= : 0.10	2 : 0.07	h : 0.07	c : 0.05	d : 0.04	] : 0.02	3 : 0.02	i : 0.01	b : 0.01	
e : 0.22	g : 0.19	= : 0.11	f : 0.10	h : 0.07	d : 0.07	2 : 0.05	] : 0.05	3 : 0.04	c : 0.02	i : 0.01	: : 0.01	
e : 0.23	g : 0.16	= : 0.11	h : 0.08	c : 0.08	2 : 0.07	d : 0.07	f : 0.07	3 : 0.02	i : 0.01	] : 0.01	: : 0.01	b : 0.01	
= : 0.14	e : 0.11	g : 0.11	d : 0.10	h : 0.08	2 : 0.07	c : 0.07	f : 0.07	] : 0.05	: : 0.04	i : 0.02	b : 0.02	3 : 0.01	4 : 0.01	> : 0.01	
= : 0.14	g : 0.14	d : 0.14	e : 0.11	c : 0.11	h : 0.08	: : 0.05	] : 0.04	2 : 0.02	G : 0.01	f : 0.01	3 : 0.01	4 : 0.01	b : 0.01	i : 0.01	> : 0.01	

#score	1457.7086166622291
#seq	68
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF036IYW_NSUN2_transcript_m3_run2.txt

#BEAR
bb[ccc[a[bbnnnnnbb]a]ccc	chr17:19411437-19411648(+)$1	211	28	52	8.4177
===========mmmm=========	chr13:41634780-41634997(-)$1	217	158	182	12.6198
eeee[bb!!bbmmmmbb22bbeee	chr17:73031160-73031363(+)$1	203	23	47	9.6821
"""ccc"""bbmmmmbb333ccc3	chr12:3750108-3750339(-)$1	231	53	77	12.4678
iiiiiiiiibbnnnnnbb]iiiii	chr19:1383517-1383749(+)$1	232	59	83	9.1358
::==========lll=========	chr11:73843151-73843359(-)$1	208	128	152	8.9251
bb!!gggggggmmmmggggggg22	chr8:133821721-133821933(+)$1	212	157	181	10.1851
iii!!ccc[bbmmmmbbccciiii	chr5:139345235-139345446(-)$1	211	82	106	12.3056
ff!!dddd[bbmmmmbb]dddd22	chr16:70812825-70813029(-)$1	204	41	65	9.4621
iii!!ccc[bbmmmmbbccciiii	chr5:139345229-139345432(-)$1	203	68	92	12.3056
""eeeee[cccmmmmccc]eeeee	chr16:87417513-87417726(-)$1	213	55	79	9.9073
ccc!!ccc[cccmmmmccc]ccc>	chr1:94313096-94313300(+)$1	204	94	118	9.7012
dd[ccc[ddddmmmmddddccc]d	chr16:3241952-3242176(+)$1	224	29	53	8.8566
#ggggggg[bbnnnnnbb]ggggg	chr19:45981754-45981976(-)$1	222	31	55	8.6443
[ccc[a[bbbbmmmmbb]bba]cc	chr17:37309887-37310102(-)$1	215	174	198	10.4130
iii!!ccc[bbmmmmbbccciiii	chr5:139345248-139345452(-)$1	204	88	112	12.3056
ffdddd[a[bbmmmmbb]adddd]	chr1:169076105-169076326(+)$1	221	145	169	9.5310
e"""ccc!!bboooooobb22ccc	chr14:37267487-37267699(-)$1	212	160	184	8.7005
ggggggcccbbmmmmbb]ccc]gg	chr8:55590993-55591216(+)$1	223	145	169	11.3383
b[ccc####bbmmmmbb22ccc]b	chr2:144694594-144694815(+)$1	221	166	190	11.0455
:==========mmmm=========	chr1:161858635-161858850(+)$1	215	2	26	11.6166
[ccc[a[bbbbmmmmbb]bba]cc	chr17:37309870-37310087(-)$1	217	159	183	10.4130
eeeeccca[ccclllccc]a]ccc	chr20:62597558-62597774(-)$1	216	154	178	9.1780
===========mmmm=========	chr13:41634772-41634975(-)$1	203	136	160	12.6198
hhhhhhh[cccmmmmccc]hhhhh	chr7:139025411-139025632(+)$1	221	164	188	9.6449
eeeeccca[ccclllccc]a]ccc	chr20:62597553-62597758(-)$1	205	138	162	9.1780
[bb[ccc!!bbmmmmbb22ccc]b	chr16:3239569-3239780(+)$1	211	3	27	11.4139
ggggggg[cccmmmmccc333ggg	chr19:4724558-4724762(-)$1	204	164	188	12.2129
::==========lll=========	chr11:73843159-73843374(-)$1	215	143	167	8.9251
=====a!!cccmmmmccc22a]==	chr6:28806141-28806345(-)$1	204	30	54	12.6318
gggg[a[ddddmmmmdddd]a]gg	chr19:1648815-1649041(-)$1	226	101	125	9.6539
=====a!!cccmmmmccc22a]==	chr6:28806110-28806324(-)$1	214	9	33	12.6318
=====a!!cccmmmmccc22a]==	chr6:28806136-28806341(-)$1	205	26	50	12.6318
cccccc!!cccmmmmccc22ccc]	chr17:37309902-37310105(-)$1	203	9	33	11.6579
e"""gggggggmmmmgggggggee	chr12:99093085-99093290(+)$1	205	24	48	10.3930
e"""ccc!!bboooooobb22ccc	chr14:37267475-37267687(-)$1	212	148	172	8.7005
ee"""bb!!bbmmmmbb22bb22e	chr5:180692576-180692792(+)$1	216	42	66	10.1163
:==========mmmm=========	chr1:161858625-161858835(+)$1	210	12	36	11.6166
ccc[ccc[cccmmmmccc]ccc]c	chr12:99080533-99080744(+)$1	211	113	137	12.0166
ggggggg[cccmmmmccc333ggg	chr19:4724531-4724758(-)$1	227	160	184	12.2129
ccc[ccc[cccmmmmccc]ccc]c	chr12:99080544-99080748(+)$1	204	102	126	12.0166
ccc!!ccc[cccmmmmccc]ccc>	chr1:94313100-94313325(+)$1	225	90	114	9.7012
ffffff!!cccmmmmccc]fffff	chr14:21077395-21077622(-)$1	227	9	33	10.0488
ggggggg[cccmmmmccc333ggg	chr19:4724562-4724772(-)$1	210	174	198	12.2129
ccc[ccc[cccmmmmccc]ccc]c	chr12:99080548-99080751(+)$1	203	98	122	12.0166
ff[ccc[ddddmmmmddddcccff	chr5:180618572-180618802(-)$1	230	128	152	8.8760
[==========mmmm=========	chr19:38590736-38590963(+)$1	227	74	98	12.6282
bb!!gggggggmmmmggggggg22	chr8:133821733-133821944(+)$1	211	145	169	10.1851
fff####bbbbmmmmbb]bb4444	chr1:17188367-17188600(+)$1	233	18	42	9.5507
ggga[ggggggglllggggggg]a	chr2:141612149-141612359(-)$1	210	142	166	8.6919
===========mmmm=========	chr13:41634759-41634972(-)$1	213	133	157	12.6198
""eeeee[cccmmmmccc]eeeee	chr16:87417526-87417752(-)$1	226	81	105	9.9073

#otherMatches

#Seq PSSM
UAGCGAUGCGGAGUCACCACUUUG	chr17:19411437-19411648(+)$1	211	28	52	8.4177
GGUUUGGAGGGCUGACUUUUUAAA	chr13:41634780-41634997(-)$1	217	158	182	12.6198
CUCUAGGAGGUAGCUGCAGCCGGA	chr17:73031160-73031363(+)$1	203	23	47	9.6821
gcccgccucggccucccaaagugc	chr12:3750108-3750339(-)$1	231	53	77	12.4678
ucgguuagcgcguucggcuguuaa	chr19:1383517-1383749(+)$1	232	59	83	9.1358
uagcgacgggguuucaccuuguug	chr11:73843151-73843359(-)$1	208	128	152	8.9251
UGUAUGUAGUAUAAUUGCUGUAGU	chr8:133821721-133821933(+)$1	212	157	181	10.1851
UGUACUAGUGAGCACUCCUGACAG	chr5:139345235-139345446(-)$1	211	82	106	12.3056
ucucgccugccacgcgggaggccc	chr16:70812825-70813029(-)$1	204	41	65	9.4621
UGUACUAGUGAGCACUCCUGACAG	chr5:139345229-139345432(-)$1	203	68	92	12.3056
gucucauaaucugaaggucgugag	chr16:87417513-87417726(-)$1	213	55	79	9.9073
ggguucgagucccggcggagucgU	chr1:94313096-94313300(+)$1	204	94	118	9.7012
CUGCUGUggcucguuggucuaggg	chr16:3241952-3242176(+)$1	224	29	53	8.8566
gcccggaugauccucaguggucug	chr19:45981754-45981976(-)$1	222	31	55	8.6443
GCUUUUACUCCUACUGGCAGACGA	chr17:37309887-37310102(-)$1	215	174	198	10.4130
UGUACUAGUGAGCACUCCUGACAG	chr5:139345248-139345452(-)$1	204	88	112	12.3056
GCACCCACCGCGCUGGCCGGGGUG	chr1:169076105-169076326(+)$1	221	145	169	9.5310
AAAACCCACCAAAACUAUGAAGGG	chr14:37267487-37267699(-)$1	212	160	184	8.7005
UAGUUCCAAGUUUGUGCAUUGAGA	chr8:55590993-55591216(+)$1	223	145	169	11.3383
AUGACUUCGUGACCUCAACGUCCU	chr2:144694594-144694815(+)$1	221	166	190	11.0455
ggggccagcuuccacgagcugguc	chr1:161858635-161858850(+)$1	215	2	26	11.6166
GCUUUUACUCCUACUGGCAGACGA	chr17:37309870-37310087(-)$1	217	159	183	10.4130
GCAAGCCGGUGACAGUCAGCAGGC	chr20:62597558-62597774(-)$1	216	154	178	9.1780
GGUUUGGAGGGCUGACUUUUUAAA	chr13:41634772-41634975(-)$1	203	136	160	12.6198
ACUUUUUUUUUUUUUAAAUGGGAA	chr7:139025411-139025632(+)$1	221	164	188	9.6449
GCAAGCCGGUGACAGUCAGCAGGC	chr20:62597553-62597758(-)$1	205	138	162	9.1780
CCCCAGCCGCCCCCAGGAUGCUAG	chr16:3239569-3239780(+)$1	211	3	27	11.4139
GAAAGAACGAUUCUAGUCCCAUUC	chr19:4724558-4724762(-)$1	204	164	188	12.2129
uagcgacgggguuucaccuuguug	chr11:73843159-73843374(-)$1	215	143	167	8.9251
UCUCGAGAGAACCGUUUCAGUACg	chr6:28806141-28806345(-)$1	204	30	54	12.6318
CUCGGUUUGCCUGCUGGUACAGUG	chr19:1648815-1649041(-)$1	226	101	125	9.6539
UCUCGAGAGAACCGUUUCAGUACg	chr6:28806110-28806324(-)$1	214	9	33	12.6318
UCUCGAGAGAACCGUUUCAGUACg	chr6:28806136-28806341(-)$1	205	26	50	12.6318
ACCACUAAACGACUACGUGCGGUC	chr17:37309902-37310105(-)$1	203	9	33	11.6579
UUAAUUUAGGAAAAAUUCUAGAAG	chr12:99093085-99093290(+)$1	205	24	48	10.3930
AAAACCCACCAAAACUAUGAAGGG	chr14:37267475-37267687(-)$1	212	148	172	8.7005
UUUCUCGGAGCCUCUGCAGCGCUA	chr5:180692576-180692792(+)$1	216	42	66	10.1163
ggggccagcuuccacgagcugguc	chr1:161858625-161858835(+)$1	210	12	36	11.6166
UAAAGGUAUGCUUUUGUACACUAU	chr12:99080533-99080744(+)$1	211	113	137	12.0166
GAAAGAACGAUUCUAGUCCCAUUC	chr19:4724531-4724758(-)$1	227	160	184	12.2129
UAAAGGUAUGCUUUUGUACACUAU	chr12:99080544-99080748(+)$1	204	102	126	12.0166
ggguucgagucccggcggagucgU	chr1:94313100-94313325(+)$1	225	90	114	9.7012
GCUGAAAGUUUUAUUAAAGUUUAG	chr14:21077395-21077622(-)$1	227	9	33	10.0488
GAAAGAACGAUUCUAGUCCCAUUC	chr19:4724562-4724772(-)$1	210	174	198	12.2129
UAAAGGUAUGCUUUUGUACACUAU	chr12:99080548-99080751(+)$1	203	98	122	12.0166
UCCUAUUCUUUCCUUAAAGAUAGA	chr5:180618572-180618802(-)$1	230	128	152	8.8760
GGGGGUGCUGCUGGGGCAGUACCU	chr19:38590736-38590963(+)$1	227	74	98	12.6282
UGUAUGUAGUAUAAUUGCUGUAGU	chr8:133821733-133821944(+)$1	211	145	169	10.1851
UGUUAUCCUCCAGGCGGUAGUUAC	chr1:17188367-17188600(+)$1	233	18	42	9.5507
gaccagauuugucucauggguucg	chr2:141612149-141612359(-)$1	210	142	166	8.6919
GGUUUGGAGGGCUGACUUUUUAAA	chr13:41634759-41634972(-)$1	213	133	157	12.6198
gucucauaaucugaaggucgugag	chr16:87417526-87417752(-)$1	226	81	105	9.9073

#DB
((.(((.(.((.....)).).)))	chr17:19411437-19411648(+)$1	1	28	52	8.4177
(((((((((((....)))))))))	chr13:41634780-41634997(-)$1	1	158	182	12.6198
((((.((..((....))..)))))	chr17:73031160-73031363(+)$1	1	23	47	9.6821
...(((...((....))...))).	chr12:3750108-3750339(-)$1	1	53	77	12.4678
(((((((((((.....)).)))))	chr19:1383517-1383749(+)$1	1	59	83	9.1358
..((((((((((...)))))))))	chr11:73843151-73843359(-)$1	1	128	152	8.9251
((..(((((((....)))))))..	chr8:133821721-133821933(+)$1	1	157	181	10.1851
(((..(((.((....)))))))))	chr5:139345235-139345446(-)$1	1	82	106	12.3056
((..((((.((....)).))))..	chr16:70812825-70813029(-)$1	1	41	65	9.4621
(((..(((.((....)))))))))	chr5:139345229-139345432(-)$1	1	68	92	12.3056
..(((((.(((....))).)))))	chr16:87417513-87417726(-)$1	1	55	79	9.9073
(((..(((.(((....))).))).	chr1:94313096-94313300(+)$1	1	94	118	9.7012
((.(((.((((....))))))).)	chr16:3241952-3242176(+)$1	1	29	53	8.8566
.(((((((.((.....)).)))))	chr19:45981754-45981976(-)$1	1	31	55	8.6443
.(((.(.((((....)).))).))	chr17:37309887-37310102(-)$1	1	174	198	10.4130
(((..(((.((....)))))))))	chr5:139345248-139345452(-)$1	1	88	112	12.3056
((((((.(.((....)).))))).	chr1:169076105-169076326(+)$1	1	145	169	9.5310
(...(((..((......))..)))	chr14:37267487-37267699(-)$1	1	160	184	8.7005
(((((((((((....)).))).))	chr8:55590993-55591216(+)$1	1	145	169	11.3383
(.(((....((....))..))).)	chr2:144694594-144694815(+)$1	1	166	190	11.0455
.((((((((((....)))))))))	chr1:161858635-161858850(+)$1	1	2	26	11.6166
.(((.(.((((....)).))).))	chr17:37309870-37310087(-)$1	1	159	183	10.4130
((((((((.(((...))).).)))	chr20:62597558-62597774(-)$1	1	154	178	9.1780
(((((((((((....)))))))))	chr13:41634772-41634975(-)$1	1	136	160	12.6198
(((((((.(((....))).)))))	chr7:139025411-139025632(+)$1	1	164	188	9.6449
((((((((.(((...))).).)))	chr20:62597553-62597758(-)$1	1	138	162	9.1780
.((.(((..((....))..))).)	chr16:3239569-3239780(+)$1	1	3	27	11.4139
(((((((.(((....)))...)))	chr19:4724558-4724762(-)$1	1	164	188	12.2129
..((((((((((...)))))))))	chr11:73843159-73843374(-)$1	1	143	167	8.9251
((((((..(((....)))..).))	chr6:28806141-28806345(-)$1	1	30	54	12.6318
((((.(.((((....)))).).))	chr19:1648815-1649041(-)$1	1	101	125	9.6539
((((((..(((....)))..).))	chr6:28806110-28806324(-)$1	1	9	33	12.6318
((((((..(((....)))..).))	chr6:28806136-28806341(-)$1	1	26	50	12.6318
((((((..(((....)))..))).	chr17:37309902-37310105(-)$1	1	9	33	11.6579
(...(((((((....)))))))))	chr12:99093085-99093290(+)$1	1	24	48	10.3930
(...(((..((......))..)))	chr14:37267475-37267687(-)$1	1	148	172	8.7005
((...((..((....))..))..)	chr5:180692576-180692792(+)$1	1	42	66	10.1163
.((((((((((....)))))))))	chr1:161858625-161858835(+)$1	1	12	36	11.6166
(((.(((.(((....))).))).)	chr12:99080533-99080744(+)$1	1	113	137	12.0166
(((((((.(((....)))...)))	chr19:4724531-4724758(-)$1	1	160	184	12.2129
(((.(((.(((....))).))).)	chr12:99080544-99080748(+)$1	1	102	126	12.0166
(((..(((.(((....))).))).	chr1:94313100-94313325(+)$1	1	90	114	9.7012
((((((..(((....))).)))))	chr14:21077395-21077622(-)$1	1	9	33	10.0488
(((((((.(((....)))...)))	chr19:4724562-4724772(-)$1	1	174	198	12.2129
(((.(((.(((....))).))).)	chr12:99080548-99080751(+)$1	1	98	122	12.0166
((.(((.((((....)))))))))	chr5:180618572-180618802(-)$1	1	128	152	8.8760
.((((((((((....)))))))))	chr19:38590736-38590963(+)$1	1	74	98	12.6282
((..(((((((....)))))))..	chr8:133821733-133821944(+)$1	1	145	169	10.1851
(((....((((....)).))....	chr1:17188367-17188600(+)$1	1	18	42	9.5507
((((.(((((((...))))))).)	chr2:141612149-141612359(-)$1	1	142	166	8.6919
(((((((((((....)))))))))	chr13:41634759-41634972(-)$1	1	133	157	12.6198
..(((((.(((....))).)))))	chr16:87417526-87417752(-)$1	1	81	105	9.9073

#PSSM
e : 0.13	= : 0.11	c : 0.11	g : 0.11	f : 0.09	b : 0.07	i : 0.07	: : 0.07	[ : 0.07	" : 0.05	d : 0.01	# : 0.01	h : 0.01	
= : 0.17	c : 0.15	g : 0.13	" : 0.11	f : 0.09	b : 0.07	e : 0.07	i : 0.07	: : 0.03	d : 0.01	[ : 0.01	h : 0.01	
= : 0.21	c : 0.17	g : 0.13	e : 0.09	" : 0.09	i : 0.07	[ : 0.05	! : 0.05	f : 0.03	d : 0.01	h : 0.01	b : 0.01	
= : 0.21	c : 0.15	! : 0.15	g : 0.11	e : 0.09	" : 0.07	[ : 0.07	i : 0.01	d : 0.01	h : 0.01	f : 0.01	# : 0.01	a : 0.01	
c : 0.26	= : 0.21	g : 0.15	[ : 0.09	! : 0.09	d : 0.03	e : 0.03	i : 0.01	h : 0.01	" : 0.01	f : 0.01	# : 0.01	
c : 0.34	g : 0.17	= : 0.15	a : 0.11	b : 0.03	d : 0.03	e : 0.03	# : 0.03	i : 0.01	h : 0.01	f : 0.01	
c : 0.26	= : 0.15	g : 0.15	[ : 0.13	! : 0.09	b : 0.03	e : 0.03	# : 0.03	" : 0.01	i : 0.01	d : 0.01	h : 0.01	
! : 0.19	[ : 0.17	= : 0.15	c : 0.11	g : 0.09	a : 0.07	d : 0.07	b : 0.05	" : 0.01	i : 0.01	# : 0.01	
c : 0.28	[ : 0.21	= : 0.15	! : 0.09	g : 0.07	d : 0.05	b : 0.05	" : 0.01	i : 0.01	# : 0.01	
b : 0.36	c : 0.34	= : 0.15	g : 0.07	d : 0.05	
b : 0.36	c : 0.34	= : 0.15	g : 0.07	d : 0.05	
m : 0.76	c : 0.07	n : 0.05	= : 0.03	o : 0.03	g : 0.01	
m : 0.80	l : 0.09	n : 0.05	o : 0.03	
m : 0.80	l : 0.09	n : 0.05	o : 0.03	
m : 0.80	l : 0.09	n : 0.05	o : 0.03	
c : 0.30	b : 0.26	= : 0.15	g : 0.07	n : 0.05	d : 0.05	m : 0.03	o : 0.03	
c : 0.34	b : 0.32	= : 0.15	g : 0.07	d : 0.05	o : 0.03	
c : 0.40	= : 0.15	] : 0.11	b : 0.09	2 : 0.07	g : 0.07	d : 0.05	3 : 0.01	
] : 0.23	= : 0.15	2 : 0.15	c : 0.11	b : 0.09	3 : 0.07	g : 0.07	d : 0.07	a : 0.01	
c : 0.21	= : 0.15	2 : 0.11	b : 0.09	g : 0.09	3 : 0.07	a : 0.05	] : 0.05	d : 0.03	e : 0.03	i : 0.01	h : 0.01	f : 0.01	
c : 0.23	= : 0.15	a : 0.11	g : 0.09	i : 0.07	] : 0.05	3 : 0.05	b : 0.03	d : 0.03	e : 0.03	2 : 0.03	h : 0.01	f : 0.01	4 : 0.01	
c : 0.30	= : 0.15	g : 0.15	] : 0.13	i : 0.07	e : 0.05	d : 0.03	h : 0.01	2 : 0.01	f : 0.01	4 : 0.01	
c : 0.21	= : 0.21	] : 0.13	g : 0.11	e : 0.07	i : 0.07	2 : 0.07	f : 0.03	d : 0.01	h : 0.01	4 : 0.01	
= : 0.21	c : 0.19	g : 0.11	e : 0.09	i : 0.07	2 : 0.05	> : 0.03	] : 0.03	b : 0.03	f : 0.03	3 : 0.01	d : 0.01	h : 0.01	4 : 0.01	a : 0.01	

#score	553.8729808378004
#seq	52
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_CDS_m1_run2.txt

#BEAR
]bb============dddd!!a[aooooooa]a22dddd:	chr19:11256982-11257249(-)$1	267	203	243	21.2840
cccbb==========[ffffffssssssssssffffff]=	chr4:39460410-39460634(-)$1	224	87	127	24.6545
ddd============[dddd^^^^^^^^^^^^^^^^^^^^	chr9:134067478-134067725(+)$1	247	51	91	25.0111
:::=========="""ccc[bbssssssssssbb]ccc==	chr14:81686746-81687065(-)$1	319	180	220	25.7362

#otherMatches

#Seq PSSM
AGUUUCACAUCUGUGACGGGAUGGGACAAAUGACACCGUG	chr19:11256982-11257249(-)$1	267	203	243	21.2840
ACGACAGACGUUCUUUCUUUGCUGCGUCUACUGCGAGGUA	chr4:39460410-39460634(-)$1	224	87	127	24.6545
CAGUGUUUCUGUCUUUUUGUAAUAuucuuuuuuuuuuuuu	chr9:134067478-134067725(+)$1	247	51	91	25.0111
UCUUGUUUGUGUUGUGUGUGGAAAUGGCGAACUCGGCAAA	chr14:81686746-81687065(-)$1	319	180	220	25.7362

#DB
.))))))))))))))((((..(.(......).)..)))).	chr19:11256982-11257249(-)$1	1	203	243	21.2840
)))))((((((((((.((((((..........)))))).)	chr4:39460410-39460634(-)$1	1	87	127	24.6545
(((((((((((((((.((((....................	chr9:134067478-134067725(+)$1	1	51	91	25.0111
...((((((((((...(((.((..........)).)))))	chr14:81686746-81687065(-)$1	1	180	220	25.7362

#PSSM
] : 0.25	c : 0.25	d : 0.25	: : 0.25	
b : 0.25	c : 0.25	d : 0.25	: : 0.25	
b : 0.25	c : 0.25	d : 0.25	: : 0.25	
= : 0.75	b : 0.25	
= : 0.75	b : 0.25	
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
= : 0.75	" : 0.25	
= : 0.75	" : 0.25	
[ : 0.50	d : 0.25	" : 0.25	
d : 0.50	f : 0.25	c : 0.25	
d : 0.50	f : 0.25	c : 0.25	
d : 0.50	f : 0.25	c : 0.25	
! : 0.25	f : 0.25	d : 0.25	[ : 0.25	
! : 0.25	f : 0.25	^ : 0.25	b : 0.25	
a : 0.25	f : 0.25	^ : 0.25	b : 0.25	
s : 0.50	[ : 0.25	^ : 0.25	
s : 0.50	a : 0.25	^ : 0.25	
s : 0.50	o : 0.25	^ : 0.25	
s : 0.50	o : 0.25	^ : 0.25	
s : 0.50	o : 0.25	^ : 0.25	
s : 0.50	o : 0.25	^ : 0.25	
s : 0.50	o : 0.25	^ : 0.25	
s : 0.50	o : 0.25	^ : 0.25	
s : 0.50	a : 0.25	^ : 0.25	
s : 0.50	] : 0.25	^ : 0.25	
a : 0.25	f : 0.25	^ : 0.25	b : 0.25	
2 : 0.25	f : 0.25	^ : 0.25	b : 0.25	
2 : 0.25	f : 0.25	^ : 0.25	] : 0.25	
d : 0.25	f : 0.25	^ : 0.25	c : 0.25	
d : 0.25	f : 0.25	^ : 0.25	c : 0.25	
d : 0.25	f : 0.25	^ : 0.25	c : 0.25	
d : 0.25	] : 0.25	^ : 0.25	= : 0.25	
= : 0.50	: : 0.25	^ : 0.25	

#score	96.68602990002495
#seq	4
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_UTR_m3_run1.txt

#BEAR
gggggg!!bbmmmmbbggggggg	chrX:153582223-153582485(-)$1	262	127	150	10.1203
$$$ggggggglllggggggg333	chr2:10567200-10567477(+)$1	277	247	270	8.5986
fffff!!cccmmmmccc]fffff	chr6:144416224-144416510(-)$1	286	143	166	10.8068
$eeeee[cccmmmmccc333eee	chr7:98983224-98983501(+)$1	277	78	101	11.2784
c[eeeeecccmmmmccc]eeeee	chr3:47467523-47467757(-)$1	234	3	26	10.7470
$$$gggggggmmmmgggggggcc	chr8:124220521-124220768(+)$1	247	174	197	10.8668
eee[ggggggglllggggggg]e	chr19:39220234-39220474(+)$1	240	21	44	8.0680
b!!gggggggmmmmggggggg33	chr5:180665120-180665339(-)$1	219	151	174	11.5907
:eeeee[cccmmmmccc]eeeee	chr12:120636556-120636767(-)$1	211	173	196	10.1501
ccc####cccmmmmccc4444cc	chr8:144989757-144989984(-)$1	227	201	224	12.0898
"""ccc[cccmmmmccc]cccdd	chr12:6643877-6644097(+)$1	220	152	175	12.0558
$$$gggggggmmmmggggggg==	chr17:37076688-37076910(+)$1	222	117	140	11.0400
==========mmmm=========	chr8:117738156-117738493(-)$1	337	4	27	11.7668
ccc####cccmmmmccc4444cc	chr22:42280791-42281085(+)$1	294	5	28	12.0898
eeee[a[cccmmmmccc]aeeee	chr6:41909228-41909495(-)$1	267	116	139	11.1623
$$$$$eeeeemmmmeeeee4444	chr1:22150985-22151206(-)$1	221	57	80	9.0145
[a"""eeeeemmmmeeeee]aff	chr11:64536861-64537138(-)$1	277	171	194	9.2324
b[ccc[ddddmmmmddddccc]b	chr16:70415087-70415369(-)$1	282	229	252	9.1499
:dddd!!cccmmmmccc]ddddd	chr19:1220496-1220817(+)$1	321	41	64	9.9440
iii"""ddddmmmmddddiiiii	chr12:53346398-53346676(+)$1	278	19	42	10.0359
b!!ccc[cccmmmmccc]ccc22	chr13:45915076-45915301(-)$1	225	146	169	11.9838
ccc!!ccc[ammmma]cccccc:	chr5:132101000-132101282(-)$1	282	97	120	9.5037
ca[gggggggmmmmggggggg]a	chr3:53265337-53265667(-)$1	330	268	291	11.2791
ggggggg[bbmmmmbbggggggg	chr22:20941683-20941934(+)$1	251	149	172	9.8584
Feeeee[cccmmmmccc]eeeee	chr3:52027666-52027925(-)$1	259	99	122	10.5001
dd[a"""cccmmmmccc]a]ddd	chr3:53268898-53269149(-)$1	251	226	249	11.5912
!!ccc[ddddmmmmdddd]ccc2	chr19:49993723-49993930(+)$1	207	20	43	9.7091
!!bbbb[cccmmmmccc]bb333	chr20:464449-464753(-)$1	304	96	119	11.1457
!!ffffff[ammmmaffffff22	chr3:53262190-53262468(-)$1	278	224	247	9.0530
####a!!cccmmmmccc22a22c	chr17:79801729-79801989(-)$1	260	173	196	12.0276
==========mmmm=========	chr3:53289758-53289990(-)$1	232	190	213	11.7668
eee####cccmmmmccc4444ee	chr7:100276315-100276571(+)$1	256	111	134	11.5644
ccc[bb[cccmmmmccc]bbccc	chr19:18546013-18546257(-)$1	244	192	215	10.9943
!!a[ggggggglllggggggg]a	chr3:184043230-184043512(+)$1	282	196	219	8.8795
==========mmmm=========	chr3:183901388-183901682(+)$1	294	11	34	11.7668
:iiiiiiiiimmmmiiiiiiiii	chr12:10853750-10854056(-)$1	306	0	23	10.4146
$$$ccc[cccmmmmccc]ccc44	chr11:63743701-63743956(+)$1	255	32	55	11.9645
gg####ddddmmmmddddggggg	chr3:53269026-53269286(-)$1	260	141	164	9.8643
cccgggggggmmmmggggggg==	chr7:75686674-75686910(+)$1	236	165	188	11.1347
:iiiiiiiiimmmmiiiiiiiii	chr21:45180897-45181145(+)$1	248	38	61	10.4146
hhh####cccmmmmccc22hhhh	chr1:43392479-43392763(-)$1	284	250	273	10.5135
faccc!!cccmmmmccc22ccc]	chr17:60769729-60770034(+)$1	305	48	71	11.6953
""dddd[cccmmmmccc]dddd4	chr10:23003208-23003545(-)$1	337	232	255	11.0480
ddd####cccmmmmccc4444dd	chr1:27731512-27731779(-)$1	267	212	235	11.3689
fgggggggbbmmmmbb22ggggg	chr1:8921171-8921410(-)$1	239	165	188	9.4509
hhhhh!!cccmmmmccc4444hh	chr9:140005231-140005475(-)$1	244	56	79	10.5745
dddd"""cccmmmmccc22dddd	chr3:53276116-53276359(-)$1	243	78	101	10.6658
fffffeeeeemmmmeeeee4444	chr1:156290539-156290895(-)$1	356	142	165	8.5524
ccdddd[cccmmmmcccdddd]c	chr1:32827595-32827846(-)$1	251	200	223	10.3524
fffgggggggmmmmggggggg66	chr11:66043591-66043824(+)$1	233	137	160	9.7071
cc[gggggggmmmmgggggggcc	chr19:10941581-10941829(+)$1	248	191	214	11.1137
dd!!ffffffmmmmffffff333	chr19:50361751-50362006(+)$1	255	211	234	9.5128

#otherMatches

#Seq PSSM
UAUGGGCCUGGCCUCACCCAUGG	chrX:153582223-153582485(-)$1	262	127	150	10.1203
UUAAUAUAUAAAUUAUGUAUGGU	chr2:10567200-10567477(+)$1	277	247	270	8.5986
GCCUUACCACCGCAGUGCGGGGC	chr6:144416224-144416510(-)$1	286	143	166	10.8068
UCUCUUCCUCUCUCGGGCACAGG	chr7:98983224-98983501(+)$1	277	78	101	11.2784
AGGGAGGUCCUGAUGGACCCUCU	chr3:47467523-47467757(-)$1	234	3	26	10.7470
UCAGGGGCCAGGACUGGCCCCAC	chr8:124220521-124220768(+)$1	247	174	197	10.8668
GUUCCCCCGACCAGGUUGGGGAG	chr19:39220234-39220474(+)$1	240	21	44	8.0680
CUAGAUGGUGGGGACAUCAUCAA	chr5:180665120-180665339(-)$1	219	151	174	11.5907
GAUCUGCUGGUUGUCCAACAGGU	chr12:120636556-120636767(-)$1	211	173	196	10.1501
GGCCUCCGGCGUCAGCCUCCAGC	chr8:144989757-144989984(-)$1	227	201	224	12.0898
GAGUUCGCGGGUGGCUGGGGGGC	chr12:6643877-6644097(+)$1	220	152	175	12.0558
GCACACUUGUACCCACAGGUGAG	chr17:37076688-37076910(+)$1	222	117	140	11.0400
UUUUGUUUUUUCUUAGAAAUAAA	chr8:117738156-117738493(-)$1	337	4	27	11.7668
UUGGUUUUGGGGCUCCAUCAACA	chr22:42280791-42281085(+)$1	294	5	28	12.0898
GCUGUGUUGCGAAGGCACCCGGC	chr6:41909228-41909495(-)$1	267	116	139	11.1623
AAUCUGGGACUUCUGUCCCCUCA	chr1:22150985-22151206(-)$1	221	57	80	9.0145
AGAAGAUGAGCCACUUCAUGCCC	chr11:64536861-64537138(-)$1	277	171	194	9.2324
AUAGGUGGCCGCCCGGCCCCUUU	chr16:70415087-70415369(-)$1	282	229	252	9.1499
CCCUCCCGGGCACUCCCUGAGGG	chr19:1220496-1220817(+)$1	321	41	64	9.9440
AGGUCAGGAGGCUUUUUCCCUCU	chr12:53346398-53346676(+)$1	278	19	42	10.0359
CUUACUGCCGCACACGGGGGUCU	chr13:45915076-45915301(-)$1	225	146	169	11.9838
GGCCAUGUGGGUUUCGACAGCCU	chr5:132101000-132101282(-)$1	282	97	120	9.5037
CUGCCCAGCUACAAAGUUGGGGA	chr3:53265337-53265667(-)$1	330	268	291	11.2791
UGAGAAGAGGUCCCCCCUUUUUA	chr22:20941683-20941934(+)$1	251	149	172	9.8584
CAGCUUCAGUUCCAGCUCAGGCU	chr3:52027666-52027925(-)$1	259	99	122	10.5001
GUGCAGGAGCUGAAGCUGGGACC	chr3:53268898-53269149(-)$1	251	226	249	11.5912
CUUUCCUCCGCAAGCGGAUGAAC	chr19:49993723-49993930(+)$1	207	20	43	9.7091
CUGCCAACCCCCUUGGGAUGCCU	chr20:464449-464753(-)$1	304	96	119	11.1457
CCCUGCUGUGACUCCCAGCAGUC	chr3:53262190-53262468(-)$1	278	224	247	9.0530
GAAGCCUGCGGCCUCGCUUGAAG	chr17:79801729-79801989(-)$1	260	173	196	12.0276
CUGCGGCGGCCAGAGUCGCCGCG	chr3:53289758-53289990(-)$1	232	190	213	11.7668
GCCCCACCCCCACUGGGCCCAGG	chr7:100276315-100276571(+)$1	256	111	134	11.5644
GCCUCCAGGUUCCCGCCCGGGGC	chr19:18546013-18546257(-)$1	244	192	215	10.9943
AGUGAGUUCCAAGCUGGGAUUGA	chr3:184043230-184043512(+)$1	282	196	219	8.8795
GCUAGCUGCCACUAGGCAGCUAG	chr3:183901388-183901682(+)$1	294	11	34	11.7668
UAAUUUUCCUUCACAGGAAAAUU	chr12:10853750-10854056(-)$1	306	0	23	10.4146
UCCUCCUGCCAGCGGGCUGGAUC	chr11:63743701-63743956(+)$1	255	32	55	11.9645
CUCUGUAUGGGAGGCCAUGGCCU	chr3:53269026-53269286(-)$1	260	141	164	9.8643
CUCCCCACGUGAAGAUGUGGGGA	chr7:75686674-75686910(+)$1	236	165	188	11.1347
AAGAAGUUCUUCCUGGAAUUUUU	chr21:45180897-45181145(+)$1	248	38	61	10.4146
GCUCAAAUCUAUUCAGACAAGCA	chr1:43392479-43392763(-)$1	284	250	273	10.5135
UGUCAGACAUGGAAAUGAAUGAG	chr17:60769729-60770034(+)$1	305	48	71	11.6953
GAGAGGGCGGGUCCCCGGCCUCG	chr10:23003208-23003545(-)$1	337	232	255	11.0480
GUGACCCUGCUUAAGCAUUCCCA	chr1:27731512-27731779(-)$1	267	212	235	11.3689
CCUGGAGCCCUGUUGGCAGCUCU	chr1:8921171-8921410(-)$1	239	165	188	9.4509
CUUUCCACUGACCACAGAUUCGG	chr9:140005231-140005475(-)$1	244	56	79	10.5745
CUGUCUUCUCUCCUGGGCCACAG	chr3:53276116-53276359(-)$1	243	78	101	10.6658
CAAAGCCAUCAGUCGGUGGUCAU	chr1:156290539-156290895(-)$1	356	142	165	8.5524
GCCCGGCUCCGCCUGGACCGGAG	chr1:32827595-32827846(-)$1	251	200	223	10.3524
ACAGGAGGGGGCACCUUCUCCAG	chr11:66043591-66043824(+)$1	233	137	160	9.7071
GGAGCUUCAGUGGUCUGGGGCCC	chr19:10941581-10941829(+)$1	248	191	214	11.1137
CGGACCGCUCACGGGGGCGGACA	chr19:50361751-50362006(+)$1	255	211	234	9.5128

#DB
((((((..((....)))))))))	chrX:153582223-153582485(-)$1	1	127	150	10.1203
...(((((((...)))))))...	chr2:10567200-10567477(+)$1	1	247	270	8.5986
(((((..(((....))).)))))	chr6:144416224-144416510(-)$1	1	143	166	10.8068
.(((((.(((....)))...)))	chr7:98983224-98983501(+)$1	1	78	101	11.2784
(.((((((((....))).)))))	chr3:47467523-47467757(-)$1	1	3	26	10.7470
...(((((((....)))))))))	chr8:124220521-124220768(+)$1	1	174	197	10.8668
(((.(((((((...))))))).)	chr19:39220234-39220474(+)$1	1	21	44	8.0680
(..(((((((....)))))))..	chr5:180665120-180665339(-)$1	1	151	174	11.5907
.(((((.(((....))).)))))	chr12:120636556-120636767(-)$1	1	173	196	10.1501
(((....(((....)))....))	chr8:144989757-144989984(-)$1	1	201	224	12.0898
...(((.(((....))).)))))	chr12:6643877-6644097(+)$1	1	152	175	12.0558
...(((((((....)))))))))	chr17:37076688-37076910(+)$1	1	117	140	11.0400
((((((((((....)))))))))	chr8:117738156-117738493(-)$1	1	4	27	11.7668
(((....(((....)))....))	chr22:42280791-42281085(+)$1	1	5	28	12.0898
((((.(.(((....))).)))))	chr6:41909228-41909495(-)$1	1	116	139	11.1623
.....(((((....)))))....	chr1:22150985-22151206(-)$1	1	57	80	9.0145
.(...(((((....))))).)))	chr11:64536861-64537138(-)$1	1	171	194	9.2324
(.(((.((((....))))))).)	chr16:70415087-70415369(-)$1	1	229	252	9.1499
.((((..(((....))).))))(	chr19:1220496-1220817(+)$1	1	41	64	9.9440
(((...((((....)))))))))	chr12:53346398-53346676(+)$1	1	19	42	10.0359
(..(((.(((....))).)))..	chr13:45915076-45915301(-)$1	1	146	169	11.9838
(((..(((.(....).)))))).	chr5:132101000-132101282(-)$1	1	97	120	9.5037
((.(((((((....))))))).)	chr3:53265337-53265667(-)$1	1	268	291	11.2791
(((((((.((....)))))))))	chr22:20941683-20941934(+)$1	1	149	172	9.8584
)(((((.(((....))).)))))	chr3:52027666-52027925(-)$1	1	99	122	10.5001
((.(...(((....))).).)))	chr3:53268898-53269149(-)$1	1	226	249	11.5912
..(((.((((....)))).))).	chr19:49993723-49993930(+)$1	1	20	43	9.7091
..((((.(((....))).))...	chr20:464449-464753(-)$1	1	96	119	11.1457
..((((((.(....)))))))..	chr3:53262190-53262468(-)$1	1	224	247	9.0530
....(..(((....)))..)..)	chr17:79801729-79801989(-)$1	1	173	196	12.0276
((((((((((....)))))))))	chr3:53289758-53289990(-)$1	1	190	213	11.7668
(((....(((....)))....))	chr7:100276315-100276571(+)$1	1	111	134	11.5644
(((.((.(((....))).)))))	chr19:18546013-18546257(-)$1	1	192	215	10.9943
..(.(((((((...))))))).)	chr3:184043230-184043512(+)$1	1	196	219	8.8795
((((((((((....)))))))))	chr3:183901388-183901682(+)$1	1	11	34	11.7668
.(((((((((....)))))))))	chr12:10853750-10854056(-)$1	1	0	23	10.4146
...(((.(((....))).)))..	chr11:63743701-63743956(+)$1	1	32	55	11.9645
((....((((....)))))))))	chr3:53269026-53269286(-)$1	1	141	164	9.8643
)))(((((((....)))))))((	chr7:75686674-75686910(+)$1	1	165	188	11.1347
.(((((((((....)))))))))	chr21:45180897-45181145(+)$1	1	38	61	10.4146
(((....(((....)))..))))	chr1:43392479-43392763(-)$1	1	250	273	10.5135
(((((..(((....)))..))).	chr17:60769729-60770034(+)$1	1	48	71	11.6953
..((((.(((....))).)))).	chr10:23003208-23003545(-)$1	1	232	255	11.0480
(((....(((....)))....))	chr1:27731512-27731779(-)$1	1	212	235	11.3689
)(((((((((....))..)))))	chr1:8921171-8921410(-)$1	1	165	188	9.4509
(((((..(((....)))....))	chr9:140005231-140005475(-)$1	1	56	79	10.5745
((((...(((....)))..))))	chr3:53276116-53276359(-)$1	1	78	101	10.6658
((((((((((....)))))....	chr1:156290539-156290895(-)$1	1	142	165	8.5524
((((((.(((....))))))).)	chr1:32827595-32827846(-)$1	1	200	223	10.3524
((((((((((....)))))))..	chr11:66043591-66043824(+)$1	1	137	160	9.7071
((.(((((((....)))))))))	chr19:10941581-10941829(+)$1	1	191	214	11.1137
((..((((((....))))))...	chr19:50361751-50362006(+)$1	1	211	234	9.5128

#PSSM
c : 0.17	$ : 0.11	f : 0.09	: : 0.07	d : 0.07	! : 0.07	g : 0.05	e : 0.05	b : 0.05	= : 0.05	" : 0.03	h : 0.03	[ : 0.01	i : 0.01	F : 0.01	# : 0.01	
c : 0.13	e : 0.11	! : 0.11	$ : 0.09	d : 0.09	g : 0.07	f : 0.05	= : 0.05	a : 0.05	i : 0.05	[ : 0.03	" : 0.03	h : 0.03	# : 0.01	
c : 0.15	e : 0.13	$ : 0.09	d : 0.09	f : 0.07	g : 0.05	! : 0.05	= : 0.05	i : 0.05	[ : 0.05	" : 0.03	# : 0.03	h : 0.03	b : 0.01	a : 0.01	
g : 0.21	# : 0.13	c : 0.11	e : 0.09	d : 0.07	f : 0.05	[ : 0.05	= : 0.05	" : 0.03	! : 0.03	i : 0.03	$ : 0.01	a : 0.01	b : 0.01	h : 0.01	
g : 0.24	# : 0.11	c : 0.11	f : 0.07	e : 0.07	" : 0.07	= : 0.05	d : 0.05	b : 0.03	i : 0.03	[ : 0.01	$ : 0.01	! : 0.01	a : 0.01	h : 0.01	
g : 0.24	e : 0.13	# : 0.11	! : 0.09	c : 0.07	= : 0.05	" : 0.05	[ : 0.03	b : 0.03	f : 0.03	i : 0.03	d : 0.03	a : 0.01	
g : 0.23	[ : 0.21	! : 0.11	# : 0.09	e : 0.07	d : 0.07	= : 0.05	" : 0.03	f : 0.03	i : 0.03	c : 0.01	
c : 0.48	g : 0.21	d : 0.07	= : 0.05	e : 0.05	f : 0.03	i : 0.03	! : 0.01	[ : 0.01	
c : 0.46	g : 0.19	d : 0.07	b : 0.05	= : 0.05	e : 0.05	[ : 0.03	i : 0.03	f : 0.01	
c : 0.46	g : 0.19	d : 0.07	b : 0.05	= : 0.05	e : 0.05	a : 0.03	i : 0.03	f : 0.01	
m : 0.94	g : 0.03	l : 0.01	
m : 0.94	l : 0.05	
m : 0.94	l : 0.05	
m : 0.94	l : 0.03	g : 0.01	
c : 0.46	g : 0.19	d : 0.07	b : 0.05	= : 0.05	e : 0.05	a : 0.03	i : 0.03	f : 0.01	
c : 0.46	g : 0.19	d : 0.07	b : 0.05	= : 0.05	e : 0.05	f : 0.03	i : 0.03	] : 0.01	
c : 0.48	g : 0.23	d : 0.07	= : 0.05	e : 0.05	f : 0.03	i : 0.03	2 : 0.01	
] : 0.24	g : 0.23	4 : 0.09	d : 0.09	2 : 0.09	= : 0.05	e : 0.05	f : 0.03	i : 0.03	3 : 0.01	c : 0.01	
g : 0.26	e : 0.11	4 : 0.09	c : 0.09	2 : 0.07	f : 0.05	= : 0.05	d : 0.05	i : 0.05	a : 0.03	b : 0.03	3 : 0.01	] : 0.01	
g : 0.26	4 : 0.13	c : 0.13	e : 0.07	d : 0.07	f : 0.05	= : 0.05	i : 0.05	] : 0.03	b : 0.03	3 : 0.01	a : 0.01	h : 0.01	
g : 0.24	c : 0.15	4 : 0.13	e : 0.09	d : 0.09	3 : 0.05	= : 0.05	i : 0.05	f : 0.03	a : 0.01	2 : 0.01	h : 0.01	
c : 0.15	e : 0.11	d : 0.11	] : 0.09	= : 0.09	g : 0.07	3 : 0.07	4 : 0.05	i : 0.05	2 : 0.05	f : 0.03	h : 0.03	6 : 0.01	
e : 0.13	c : 0.13	d : 0.09	= : 0.09	g : 0.07	3 : 0.07	4 : 0.07	i : 0.05	2 : 0.05	f : 0.03	a : 0.03	h : 0.03	b : 0.01	: : 0.01	] : 0.01	6 : 0.01	

#score	549.781866810527
#seq	52
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_UTR_m3_run2.txt

#BEAR
ffffffnnnnnffffff	chr11:62609115-62609320(-)$1	205	106	123	13.4449
ggg[bbnnnnnbb]ggg	chr5:179043852-179044097(-)$1	245	152	169	10.1872
dd[cccnnnnnccc]dd	chr9:123202121-123202413(-)$1	292	214	231	11.3395
ffffffnnnnnffffff	chr11:62609093-62609310(-)$1	217	96	113	13.4449
d!!cccnnnnnccc22d	chr1:19431020-19431308(-)$1	288	30	47	11.4355
[eeeeennnnneeeee]	chr20:62338329-62338606(-)$1	277	196	213	9.9589
ffffffnnnnnffffff	chr3:49051478-49051744(+)$1	266	140	157	13.4449
ff[cccnnnnnccc22f	chr8:145742468-145742753(-)$1	285	220	237	12.5990
dd[cccnnnnncccddd	chr5:179048271-179048511(-)$1	240	149	166	10.9465
ffffffnnnnnffffff	chr3:184082592-184082887(+)$1	295	177	194	13.4449
ffffffnnnnnffffff	chr11:62609114-62609315(-)$1	201	101	118	13.4449
ffffffnnnnnffffff	chr12:69236319-69236526(-)$1	207	112	129	13.4449
f!!cccnnnnnccc444	chr5:179047917-179048173(-)$1	256	57	74	11.8113
ffffffnnnnnffffff	chr11:62609147-62609352(-)$1	205	138	155	13.4449
ffffffnnnnnffffff	chr11:62609021-62609229(-)$1	208	15	32	13.4449
eeecccnnnnnccc22e	chr17:7080813-7081042(-)$1	229	182	199	11.4616

#otherMatches

#Seq PSSM
guccucuauccgaggac	chr11:62609115-62609320(-)$1	205	106	123	13.4449
GAACUCUUCUUGAAUUC	chr5:179043852-179044097(-)$1	245	152	169	10.1872
AAAAUCCUGAAGAUGUU	chr9:123202121-123202413(-)$1	292	214	231	11.3395
guccucuauccgaggac	chr11:62609093-62609310(-)$1	217	96	113	13.4449
UCGAUUAAGAAGAUGUA	chr1:19431020-19431308(-)$1	288	30	47	11.4355
AUGUUUCAGAAGGACGA	chr20:62338329-62338606(-)$1	277	196	213	9.9589
GACAGCUGCAUGUUGUC	chr3:49051478-49051744(+)$1	266	140	157	13.4449
UGCGACCAAGAGUCCAC	chr8:145742468-145742753(-)$1	285	220	237	12.5990
UCAUCUACACCAGAGAA	chr5:179048271-179048511(-)$1	240	149	166	10.9465
UGAGAGUGAAUCUUUCA	chr3:184082592-184082887(+)$1	295	177	194	13.4449
guccucuauccgaggac	chr11:62609114-62609315(-)$1	201	101	118	13.4449
AAAUAGCGUAACUAUUU	chr12:69236319-69236526(-)$1	207	112	129	13.4449
UAGCUUAUCUAAAGACC	chr5:179047917-179048173(-)$1	256	57	74	11.8113
guccucuauccgaggac	chr11:62609147-62609352(-)$1	205	138	155	13.4449
guccucuauccgaggac	chr11:62609021-62609229(-)$1	208	15	32	13.4449
GGCGGCUCAGCGCUUAG	chr17:7080813-7081042(-)$1	229	182	199	11.4616

#DB
((((((.....))))))	chr11:62609115-62609320(-)$1	1	106	123	13.4449
(((.((.....)).)))	chr5:179043852-179044097(-)$1	1	152	169	10.1872
((.(((.....))).))	chr9:123202121-123202413(-)$1	1	214	231	11.3395
((((((.....))))))	chr11:62609093-62609310(-)$1	1	96	113	13.4449
(..(((.....)))..)	chr1:19431020-19431308(-)$1	1	30	47	11.4355
.(((((.....))))).	chr20:62338329-62338606(-)$1	1	196	213	9.9589
((((((.....))))))	chr3:49051478-49051744(+)$1	1	140	157	13.4449
((.(((.....)))..)	chr8:145742468-145742753(-)$1	1	220	237	12.5990
((.(((.....))))))	chr5:179048271-179048511(-)$1	1	149	166	10.9465
((((((.....))))))	chr3:184082592-184082887(+)$1	1	177	194	13.4449
((((((.....))))))	chr11:62609114-62609315(-)$1	1	101	118	13.4449
((((((.....))))))	chr12:69236319-69236526(-)$1	1	112	129	13.4449
(..(((.....)))...	chr5:179047917-179048173(-)$1	1	57	74	11.8113
((((((.....))))))	chr11:62609147-62609352(-)$1	1	138	155	13.4449
((((((.....))))))	chr11:62609021-62609229(-)$1	1	15	32	13.4449
((((((.....)))..)	chr17:7080813-7081042(-)$1	1	182	199	11.4616

#PSSM
f : 0.62	d : 0.18	g : 0.06	[ : 0.06	e : 0.06	
f : 0.56	d : 0.12	! : 0.12	e : 0.12	g : 0.06	
f : 0.50	[ : 0.18	! : 0.12	e : 0.12	g : 0.06	
f : 0.50	c : 0.37	[ : 0.06	e : 0.06	
f : 0.50	c : 0.37	b : 0.06	e : 0.06	
f : 0.50	c : 0.37	b : 0.06	e : 0.06	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
f : 0.50	c : 0.37	b : 0.06	e : 0.06	
f : 0.50	c : 0.37	b : 0.06	e : 0.06	
f : 0.50	c : 0.37	] : 0.06	e : 0.06	
f : 0.50	2 : 0.18	g : 0.06	] : 0.06	e : 0.06	d : 0.06	4 : 0.06	
f : 0.50	2 : 0.18	d : 0.12	g : 0.06	e : 0.06	4 : 0.06	
f : 0.56	d : 0.18	g : 0.06	] : 0.06	4 : 0.06	e : 0.06	

#score	197.29947110327504
#seq	16
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_UTR_m2_run2.txt

#BEAR
D:eeeeettttttttttteeeeef	chr1:181059133-181059415(+)$1	282	185	209	21.3397
dffffffuuuuuuuuuuuufffff	chr5:179143077-179143304(+)$1	227	164	188	22.8958
dffffffuuuuuuuuuuuufffff	chr5:179143157-179143389(+)$1	232	84	108	22.8958
::eeeeettttttttttteeeee:	chr15:79227217-79227450(-)$1	233	26	50	20.5929
e"""ccctttttttttttccc666	chr19:40877615-40877855(+)$1	240	80	104	21.0405
b[ccc[attttttttttta]ccc3	chr6:7899732-7900005(-)$1	273	197	221	23.3967
ggggggguuuuuuuuuuuuggggg	chr13:48830267-48830514(+)$1	247	54	78	23.4345
[eeeeevvvvvvvvvvvvveeeee	chr3:51426288-51426548(+)$1	260	184	208	23.0586
gggg[bbtttttttttttbbgggg	chr15:44045971-44046200(+)$1	229	199	223	22.7406
!fffffftttttttttttffffff	chr7:128398852-128399145(+)$1	293	73	97	23.0511
$fffffftttttttttttffffff	chr15:52839382-52839642(-)$1	260	186	210	22.7967
!ffffffuuuuuuuuuuuufffff	chr11:62393706-62393911(-)$1	205	20	44	23.1634
!!ddddwwwwwwwwwwwwwwdddd	chr5:179149912-179150120(+)$1	208	124	148	20.8929
eeeee[attttttttttta]eeee	chr4:41945714-41945932(+)$1	218	50	74	23.5830
iiiddddtttttttttttdddd22	chr15:42556250-42556493(-)$1	243	89	113	22.1352
eeeeeyyyyyyyyyyyyyyyyeee	chr11:62649340-62649585(+)$1	245	173	197	20.4692
eeeeeyyyyyyyyyyyyyyyyeee	chr15:44055174-44055379(+)$1	205	57	81	20.4692
hhhhhhhuuuuuuuuuuuuhhhhh	chr17:76167607-76167830(+)$1	223	189	213	21.2117
gggggggtttttttttttgggggg	chr7:12420209-12420462(-)$1	253	203	227	23.2626
gggg[bbuuuuuuuuuuuubb]gg	chr11:62399936-62400140(-)$1	204	161	185	22.4690
bb[bbvvvvvvvvvvvvvbb]bb4	chr19:580660-580882(+)$1	222	11	35	19.8408
fff!!auuuuuuuuuuuua22fff	chr11:62398437-62398657(-)$1	220	178	202	22.2109
:eeeeevvvvvvvvvvvvveeeee	chr14:68151643-68151923(-)$1	280	119	143	22.3887
bffffffuuuuuuuuuuuufffff	chr11:129997581-129997835(+)$1	254	187	211	22.9614
ccc!!bbtttttttttttbb22cc	chr11:118925875-118926127(-)$1	252	70	94	21.8223
"""dddduuuuuuuuuuuudddd]	chr11:118922124-118922387(-)$1	263	175	199	22.6506
hhhhhhhttttttttttthhhhhh	chr12:58089514-58089726(+)$1	212	108	132	20.8796
::eeeeeuuuuuuuuuuuueeeee	chr3:195781852-195782147(-)$1	295	85	109	21.6947
ddd[cccuuuuuuuuuuuuccc]d	chr1:155981499-155981710(-)$1	211	11	35	22.5778
hhhhhhhttttttttttthhhhhh	chr1:66036140-66036525(+)$1	385	26	50	20.8796
::ddddvvvvvvvvvvvvvdddd:	chr11:33731539-33731859(-)$1	320	75	99	19.7769
!fffffftttttttttttffffff	chr7:128398824-128399052(+)$1	228	101	125	23.0511
beeeeevvvvvvvvvvvvveeeee	chr17:57741133-57741387(+)$1	254	8	32	22.9351
ggggggguuuuuuuuuuuuggggg	chr17:79804204-79804469(-)$1	265	113	137	23.4345
ff[cccwwwwwwwwwwwwwwcccf	chr11:62398001-62398204(-)$1	203	22	46	21.1172
:ccc[bbtttttttttttbb]ccc	chr11:64898854-64899154(-)$1	300	225	249	21.6744
:ffffffuuuuuuuuuuuufffff	chr2:95752965-95753271(-)$1	306	152	176	22.4151
fffyyyyyyyyyyyyyyyyfffff	chr11:77817815-77818079(-)$1	264	205	229	19.9795
cc!!ccctttttttttttccc22c	chr1:160969348-160969632(-)$1	284	68	92	22.6612
:fffffftttttttttttffffff	chr12:16516659-16517039(+)$1	380	77	101	22.3028
gggggggtttttttttttgggggg	chr12:110778560-110778858(+)$1	298	270	294	23.2626
hh[dddduuuuuuuuuuuudddd]	chr17:75495633-75495906(+)$1	273	212	236	22.4328
d[dddduuuuuuuuuuuudddddd	chr15:89444836-89445068(-)$1	232	160	184	21.7667
bb[ddddtttttttttttdddd]b	chr22:19951628-19951897(+)$1	269	117	141	22.1227
:fffffftttttttttttffffff	chr22:36657608-36657869(+)$1	261	13	37	22.3028
::eeeeettttttttttteeeee:	chr4:144920464-144920704(-)$1	240	208	232	20.5929
c[ddddvvvvvvvvvvvvvdddd]	chr5:172447139-172447471(+)$1	332	120	144	22.4895
"eeeeevvvvvvvvvvvvveeeee	chr12:110777009-110777277(+)$1	268	19	43	23.0760
ggggggwwwwwwwwwwwwwwgggg	chr17:57842279-57842600(+)$1	321	1	25	21.5931
hhhhhhhuuuuuuuuuuuuhhhhh	chr14:21270039-21270282(-)$1	243	18	42	21.2117
effffffuuuuuuuuuuuufffff	chr13:48830344-48830596(+)$1	252	156	180	22.9072
cc!!avvvvvvvvvvvvva22ccc	chr3:195785348-195785584(-)$1	236	98	122	21.4814
"""dddduuuuuuuuuuuudddd5	chr2:62115415-62115621(-)$1	206	101	125	21.7628
:eeeeewwwwwwwwwwwwwweeee	chr5:143544986-143545244(-)$1	258	81	105	20.8489
+eeeeevvvvvvvvvvvvveeeee	chr11:62393518-62393737(-)$1	219	71	95	22.5730
eeeddddtttttttttttdddd]e	chr6:43479934-43480154(-)$1	220	117	141	22.4691
iiiiiiitttttttttttiiiiii	chr16:58195287-58195559(-)$1	272	229	253	22.8995
iiiiiiitttttttttttiiiiii	chr17:26890731-26891016(-)$1	285	46	70	22.8995
""ddddwwwwwwwwwwwwwwdddd	chr16:74505038-74505285(-)$1	247	41	65	20.7318

#otherMatches

#Seq PSSM
UCCCCAGGGUUUAAGAGAUUGGGG	chr1:181059133-181059415(+)$1	282	185	209	21.3397
UUGGGAUGAAAGACCAAAAAUCCC	chr5:179143077-179143304(+)$1	227	164	188	22.8958
UUGGGAUGAAAGACCAAAAAUCCC	chr5:179143157-179143389(+)$1	232	84	108	22.8958
AAUUGCUCAGCCACCAAAAGUAAC	chr15:79227217-79227450(-)$1	233	26	50	20.5929
GCCCCGGUUCUAUGACACCCGCUA	chr19:40877615-40877855(+)$1	240	80	104	21.0405
GUGAGUGUCUAccuccuucccucc	chr6:7899732-7900005(-)$1	273	197	221	23.3967
GUGUACUACUGUGGAAUAAAGUAC	chr13:48830267-48830514(+)$1	247	54	78	23.4345
AUGCCUAAAUAUGCCCCCAAGGCA	chr3:51426288-51426548(+)$1	260	184	208	23.0586
UUACAUGGAAAAAAAUAACAGUAA	chr15:44045971-44046200(+)$1	229	199	223	22.7406
UGAUCCAGAUCCUGAUGAUGGAUU	chr7:128398852-128399145(+)$1	293	73	97	23.0511
AAAUGGAUCUACCUAAUUUCUAUU	chr15:52839382-52839642(-)$1	260	186	210	22.7967
AUGAUGGGCACACGUUCAACUAUC	chr11:62393706-62393911(-)$1	205	20	44	23.1634
UGUGCAUUUGUGUCUGUUAUUGUA	chr5:179149912-179150120(+)$1	208	124	148	20.8929
GAGUAUCUUCCCAGUCUUGUUAUU	chr4:41945714-41945932(+)$1	218	50	74	23.5830
CAGGCAGAAGAAGUAGAGUUGUAU	chr15:42556250-42556493(-)$1	243	89	113	22.1352
CUCUUGCAAUCGGCUAAAAAAAAG	chr11:62649340-62649585(+)$1	245	173	197	20.4692
AGCACUUAUUGCUUCUUCCUUGUG	chr15:44055174-44055379(+)$1	205	57	81	20.4692
ACCCUGCUGUGCUCCCCCUGCAGG	chr17:76167607-76167830(+)$1	223	189	213	21.2117
UCCCGCUACAAAAAACUCAGUGGG	chr7:12420209-12420462(-)$1	253	203	227	23.2626
AUAGGUAUACUAGGGGCAUUAGCU	chr11:62399936-62400140(-)$1	204	161	185	22.4690
UCGUCAGAACACAUCAACGAGGGG	chr19:580660-580882(+)$1	222	11	35	19.8408
UUCUUCUGCUCUUUUCUUGUCGGG	chr11:62398437-62398657(-)$1	220	178	202	22.2109
AGCAGGGAGCCCAGACCAGCCUGC	chr14:68151643-68151923(-)$1	280	119	143	22.3887
CCUGACCAUUGGAAAAUACGGUCA	chr11:129997581-129997835(+)$1	254	187	211	22.9614
CCUCAGGCGAUUAAGAAUCCAAAG	chr11:118925875-118926127(-)$1	252	70	94	21.8223
CCAUGAUUUCAACUUCCACAUCAA	chr11:118922124-118922387(-)$1	263	175	199	22.6506
GAAGGUAACUCACUCCUAUAUUUU	chr12:58089514-58089726(+)$1	212	108	132	20.8796
GUUCGUGAUUAAACUAACCCAUGA	chr3:195781852-195782147(-)$1	295	85	109	21.6947
UCGUUCUUUUCUUCUUUUCAGAUU	chr1:155981499-155981710(-)$1	211	11	35	22.5778
GUGAUAACUGCGUUUAACUUGUCA	chr1:66036140-66036525(+)$1	385	26	50	20.8796
ACCUGUGUAACUUUAACGAACAGC	chr11:33731539-33731859(-)$1	320	75	99	19.7769
UGAUCCAGAUCCUGAUGAUGGAUU	chr7:128398824-128399052(+)$1	228	101	125	23.0511
CAACUGCUCAUUUCUAAAACAGUU	chr17:57741133-57741387(+)$1	254	8	32	22.9351
GGCAGAGAGGAUCACAGAGUUCUG	chr17:79804204-79804469(-)$1	265	113	137	23.4345
UCUGGCUAGACAUUGAACAUGCUG	chr11:62398001-62398204(-)$1	203	22	46	21.1172
CUGGGCCUCUCCUGAUCUGGACCA	chr11:64898854-64899154(-)$1	300	225	249	21.6744
AAGAGAGCCGCCACGUAACCUCUC	chr2:95752965-95753271(-)$1	306	152	176	22.4151
UUCUAGCAAUUCUCCCAAUGAGGU	chr11:77817815-77818079(-)$1	264	205	229	19.9795
GCCUGACUUCUUAUUUGUGUCUCG	chr1:160969348-160969632(-)$1	284	68	92	22.6612
UGAAUGACCUUGAAAAUAUUAUUC	chr12:16516659-16517039(+)$1	380	77	101	22.3028
AGGCUACACAAGCACAUAGUAGCC	chr12:110778560-110778858(+)$1	298	270	294	23.2626
GCCCAGGCCUUGCUGACUCUCUGA	chr17:75495633-75495906(+)$1	273	212	236	22.4328
CUCCAGCAGCUACAAGACCUGGGG	chr15:89444836-89445068(-)$1	232	160	184	21.7667
AUGAUGUGGACACACUGGACAUGG	chr22:19951628-19951897(+)$1	269	117	141	22.1227
CCUUUCUUCUUUCCAACUAGAGAG	chr22:36657608-36657869(+)$1	261	13	37	22.3028
CCUAAGAAAAUGUGUCUAUCUUAA	chr4:144920464-144920704(-)$1	240	208	232	20.5929
GCCCAACUCAACCCUCUCUUUGGA	chr5:172447139-172447471(+)$1	332	120	144	22.4895
agguaaaAAAGUUCAGAAAUUGCC	chr12:110777009-110777277(+)$1	268	19	43	23.0760
ugauaauuuuuuaauaGUUCUUAU	chr17:57842279-57842600(+)$1	321	1	25	21.5931
UUUCUCAAUUAGGCUUUUCUGGGA	chr14:21270039-21270282(-)$1	243	18	42	21.2117
UGUUCAUGACUUUAACAAGGUGAG	chr13:48830344-48830596(+)$1	252	156	180	22.9072
UGGGCAAUUUCUAUAUCAGGACAG	chr3:195785348-195785584(-)$1	236	98	122	21.4814
CAAAGGUAUCACUCUCAUGGCCUG	chr2:62115415-62115621(-)$1	206	101	125	21.7628
AUGCUGGCUAUGACUAUUCGCAGC	chr5:143544986-143545244(-)$1	258	81	105	20.8489
UGAUGGACAUCUGCUUUUACCAUC	chr11:62393518-62393737(-)$1	219	71	95	22.5730
GGAGGGCCCCAACAUCCCGCCCAU	chr6:43479934-43480154(-)$1	220	117	141	22.4691
UUGUUUGCUUCAUUAUCUUAAACA	chr16:58195287-58195559(-)$1	272	229	253	22.8995
CAUGAUGCUUGCCCUUUUCAUUGU	chr17:26890731-26891016(-)$1	285	46	70	22.8995
CUACAAGUUUUGUUCAUUAAUUGU	chr16:74505038-74505285(-)$1	247	41	65	20.7318

#DB
(.(((((...........)))))(	chr1:181059133-181059415(+)$1	1	185	209	21.3397
(((((((............)))))	chr5:179143077-179143304(+)$1	1	164	188	22.8958
(((((((............)))))	chr5:179143157-179143389(+)$1	1	84	108	22.8958
..(((((...........))))).	chr15:79227217-79227450(-)$1	1	26	50	20.5929
(...(((...........)))...	chr19:40877615-40877855(+)$1	1	80	104	21.0405
(.(((.(...........).))).	chr6:7899732-7900005(-)$1	1	197	221	23.3967
(((((((............)))))	chr13:48830267-48830514(+)$1	1	54	78	23.4345
.(((((.............)))))	chr3:51426288-51426548(+)$1	1	184	208	23.0586
((((.((...........))))))	chr15:44045971-44046200(+)$1	1	199	223	22.7406
.((((((...........))))))	chr7:128398852-128399145(+)$1	1	73	97	23.0511
.((((((...........))))))	chr15:52839382-52839642(-)$1	1	186	210	22.7967
.((((((............)))))	chr11:62393706-62393911(-)$1	1	20	44	23.1634
..((((..............))))	chr5:179149912-179150120(+)$1	1	124	148	20.8929
(((((.(...........).))))	chr4:41945714-41945932(+)$1	1	50	74	23.5830
(((((((...........))))..	chr15:42556250-42556493(-)$1	1	89	113	22.1352
(((((................)))	chr11:62649340-62649585(+)$1	1	173	197	20.4692
(((((................)))	chr15:44055174-44055379(+)$1	1	57	81	20.4692
(((((((............)))))	chr17:76167607-76167830(+)$1	1	189	213	21.2117
(((((((...........))))))	chr7:12420209-12420462(-)$1	1	203	227	23.2626
((((.((............)).))	chr11:62399936-62400140(-)$1	1	161	185	22.4690
((.((.............)).)).	chr19:580660-580882(+)$1	1	11	35	19.8408
(((..(............)..)))	chr11:62398437-62398657(-)$1	1	178	202	22.2109
.(((((.............)))))	chr14:68151643-68151923(-)$1	1	119	143	22.3887
(((((((............)))))	chr11:129997581-129997835(+)$1	1	187	211	22.9614
(((..((...........))..))	chr11:118925875-118926127(-)$1	1	70	94	21.8223
...((((............)))).	chr11:118922124-118922387(-)$1	1	175	199	22.6506
(((((((...........))))))	chr12:58089514-58089726(+)$1	1	108	132	20.8796
..(((((............)))))	chr3:195781852-195782147(-)$1	1	85	109	21.6947
(((.(((............))).)	chr1:155981499-155981710(-)$1	1	11	35	22.5778
(((((((...........))))))	chr1:66036140-66036525(+)$1	1	26	50	20.8796
..((((.............)))).	chr11:33731539-33731859(-)$1	1	75	99	19.7769
.((((((...........))))))	chr7:128398824-128399052(+)$1	1	101	125	23.0511
((((((.............)))))	chr17:57741133-57741387(+)$1	1	8	32	22.9351
(((((((............)))))	chr17:79804204-79804469(-)$1	1	113	137	23.4345
((.(((..............))))	chr11:62398001-62398204(-)$1	1	22	46	21.1172
.(((.((...........)).)))	chr11:64898854-64899154(-)$1	1	225	249	21.6744
.((((((............)))))	chr2:95752965-95753271(-)$1	1	152	176	22.4151
(((................)))))	chr11:77817815-77818079(-)$1	1	205	229	19.9795
((..(((...........)))..)	chr1:160969348-160969632(-)$1	1	68	92	22.6612
.((((((...........))))))	chr12:16516659-16517039(+)$1	1	77	101	22.3028
(((((((...........))))))	chr12:110778560-110778858(+)$1	1	270	294	23.2626
((.((((............)))).	chr17:75495633-75495906(+)$1	1	212	236	22.4328
(.((((............))))))	chr15:89444836-89445068(-)$1	1	160	184	21.7667
((.((((...........)))).)	chr22:19951628-19951897(+)$1	1	117	141	22.1227
.((((((...........))))))	chr22:36657608-36657869(+)$1	1	13	37	22.3028
..(((((...........))))).	chr4:144920464-144920704(-)$1	1	208	232	20.5929
(.((((.............)))).	chr5:172447139-172447471(+)$1	1	120	144	22.4895
.(((((.............)))))	chr12:110777009-110777277(+)$1	1	19	43	23.0760
((((((..............))))	chr17:57842279-57842600(+)$1	1	1	25	21.5931
(((((((............)))))	chr14:21270039-21270282(-)$1	1	18	42	21.2117
(((((((............)))))	chr13:48830344-48830596(+)$1	1	156	180	22.9072
((..(.............)..)))	chr3:195785348-195785584(-)$1	1	98	122	21.4814
...((((............)))).	chr2:62115415-62115621(-)$1	1	101	125	21.7628
.(((((..............))))	chr5:143544986-143545244(-)$1	1	81	105	20.8489
.(((((.............)))))	chr11:62393518-62393737(-)$1	1	71	95	22.5730
(((((((...........)))).)	chr6:43479934-43480154(-)$1	1	117	141	22.4691
(((((((...........))))))	chr16:58195287-58195559(-)$1	1	229	253	22.8995
(((((((...........))))))	chr17:26890731-26891016(-)$1	1	46	70	22.8995
..((((..............))))	chr16:74505038-74505285(-)$1	1	41	65	20.7318

#PSSM
: : 0.16	g : 0.11	e : 0.10	b : 0.08	h : 0.08	d : 0.06	! : 0.06	c : 0.06	" : 0.06	i : 0.05	f : 0.05	D : 0.01	[ : 0.01	$ : 0.01	+ : 0.01	
f : 0.23	e : 0.16	g : 0.11	: : 0.08	h : 0.08	" : 0.06	c : 0.06	[ : 0.05	i : 0.05	b : 0.03	! : 0.01	d : 0.01	
e : 0.23	f : 0.22	g : 0.11	d : 0.10	h : 0.06	[ : 0.06	" : 0.05	c : 0.05	i : 0.05	! : 0.03	
e : 0.22	f : 0.18	d : 0.18	g : 0.11	h : 0.06	! : 0.06	c : 0.05	i : 0.03	" : 0.01	b : 0.01	[ : 0.01	y : 0.01	
e : 0.22	f : 0.18	d : 0.18	c : 0.08	g : 0.08	h : 0.06	[ : 0.05	! : 0.03	i : 0.03	b : 0.01	y : 0.01	a : 0.01	
f : 0.18	d : 0.18	e : 0.16	g : 0.08	c : 0.06	b : 0.06	h : 0.06	y : 0.05	[ : 0.03	v : 0.03	i : 0.03	a : 0.01	
f : 0.18	v : 0.15	d : 0.10	w : 0.08	e : 0.06	g : 0.06	b : 0.06	h : 0.06	c : 0.05	y : 0.05	a : 0.03	u : 0.03	i : 0.03	
t : 0.40	u : 0.30	v : 0.15	w : 0.08	y : 0.05	
t : 0.40	u : 0.30	v : 0.15	w : 0.08	y : 0.05	
t : 0.40	u : 0.30	v : 0.15	w : 0.08	y : 0.05	
t : 0.40	u : 0.30	v : 0.15	w : 0.08	y : 0.05	
t : 0.40	u : 0.30	v : 0.15	w : 0.08	y : 0.05	
t : 0.40	u : 0.30	v : 0.15	w : 0.08	y : 0.05	
t : 0.40	u : 0.30	v : 0.15	w : 0.08	y : 0.05	
t : 0.40	u : 0.30	v : 0.15	w : 0.08	y : 0.05	
t : 0.40	u : 0.30	v : 0.15	w : 0.08	y : 0.05	
t : 0.40	u : 0.30	v : 0.15	w : 0.08	y : 0.05	
t : 0.40	u : 0.30	v : 0.15	w : 0.08	y : 0.05	
u : 0.27	v : 0.11	f : 0.08	w : 0.08	a : 0.06	b : 0.06	d : 0.06	e : 0.05	y : 0.05	c : 0.03	g : 0.03	h : 0.03	i : 0.03	
f : 0.20	e : 0.15	d : 0.15	b : 0.08	w : 0.08	g : 0.06	h : 0.06	c : 0.05	] : 0.03	y : 0.03	2 : 0.03	i : 0.03	
f : 0.20	e : 0.18	d : 0.18	g : 0.10	c : 0.08	h : 0.06	2 : 0.05	y : 0.03	] : 0.03	i : 0.03	b : 0.01	
e : 0.22	f : 0.22	d : 0.18	g : 0.10	c : 0.08	h : 0.06	2 : 0.03	i : 0.03	6 : 0.01	] : 0.01	b : 0.01	
e : 0.22	f : 0.22	d : 0.13	g : 0.11	c : 0.08	h : 0.06	] : 0.05	2 : 0.03	i : 0.03	6 : 0.01	b : 0.01	
f : 0.25	e : 0.18	g : 0.11	d : 0.06	h : 0.06	c : 0.06	: : 0.05	] : 0.05	i : 0.03	6 : 0.01	3 : 0.01	2 : 0.01	4 : 0.01	b : 0.01	5 : 0.01	

#score	1301.5799295579002
#seq	59
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_CDS_m1_run1.txt

#BEAR
fff!!ddddoooooodddd22ffffff	chr17:56082934-56083222(-)$1	288	77	104	7.2611
gggggg"""cccmmmmcccggggggg]	chr17:79663451-79663712(+)$1	261	121	148	8.8039
ffff"""ddddnnnnndddd333ffff	chr20:2640897-2641179(-)$1	282	193	220	11.9013
ffff####cccnnnnnccc]ffffff:	chr20:44515676-44515971(-)$1	295	254	281	12.9802
e[bb[ffffffnnnnnffffff]bbee	chr12:6687492-6687813(-)$1	321	27	54	10.9328
a[gggggggcccmmmmccc]ggggggg	chr13:113980077-113980362(-)$1	285	50	77	8.3279
[a[dddd!!bbnnnnnbb22dddd]ad	chr17:76115370-76115657(-)$1	287	8	35	10.8794
cccgggggggooooooggggggg]ccc	chr16:67178065-67178297(+)$1	232	16	43	8.5760
:eeeee!!cccnnnnnccc22eeeee:	chr16:89971133-89971380(+)$1	247	59	86	10.7464
[bb[cccddddnnnnndddd]ccc]bb	chr7:889114-889416(+)$1	302	221	248	10.2430
:eeeee"""bbnnnnnbb4444eeeee	chr2:203964167-203964470(+)$1	303	237	264	11.6379
!ccc[bb[cccnnnnnccc]bb]ccc2	chr20:2819563-2819833(-)$1	270	44	71	12.3540
:==========nnnnn==========:	chr3:58520198-58520513(-)$1	315	244	271	11.3011
hhh####bbbbnnnnnbb]bb4444hh	chr12:121783759-121784010(-)$1	251	176	203	10.5648
eeee[ffffffnnnnnffffff]eeee	chr17:4692816-4693076(+)$1	260	141	168	11.5146
ddd!!bb[cccnnnnncccbb22dddd	chr17:7123741-7124002(+)$1	261	98	125	10.8836
c[ffffff!!bbmmmmbb]ffffff]c	chr2:47637256-47637510(+)$1	254	54	81	7.6561
[bb!!ffffffnnnnnffffff22bb]	chr17:80050791-80051062(-)$1	271	155	182	11.1627
fff!!ccc[bbnnnnnbbcccffffff	chr22:38209297-38209542(+)$1	245	32	59	12.9748
Cffffff[a[annnnna]a]ffffff:	chr9:123287192-123287466(-)$1	274	47	74	10.9876
ff[ccc"""bbnnnnnbb333ccc]ff	chr14:21967359-21967672(-)$1	313	160	187	13.3685

#otherMatches

#Seq PSSM
UUCUUUUCUUUGACCAGAAUUGGAUAC	chr17:56082934-56083222(-)$1	288	77	104	7.2611
CCAGCCACAGGCCGGGGCCGGCUGGGG	chr17:79663451-79663712(+)$1	261	121	148	8.8039
CAGUGCUGUGAGGAAGUUGCUGAACUG	chr20:2640897-2641179(-)$1	282	193	220	11.9013
UGGUGGAACAGGCCCACUGAGCCAGAA	chr20:44515676-44515971(-)$1	295	254	281	12.9802
UACAGUGUUCUGGGUAAGGGCGAUGGU	chr12:6687492-6687813(-)$1	321	27	54	10.9328
GGAGCGUCUCGGUGUGCUGUGGACGCU	chr13:113980077-113980362(-)$1	285	50	77	8.3279
UGUGACCAAGCACCUGGUGGGGUCCCC	chr17:76115370-76115657(-)$1	287	8	35	10.8794
CAGGCAUUCUUGCUGUGGAGUGCACUG	chr16:67178065-67178297(+)$1	232	16	43	8.5760
CGCCCUCAGGCCAGCAGCCCAGGGGCC	chr16:89971133-89971380(+)$1	247	59	86	10.7464
GUGACAUGGUGGUCCUCACUGAUGACG	chr7:889114-889416(+)$1	302	221	248	10.2430
CGCAGUAAUGAACAAAUCUCCAGCUGC	chr2:203964167-203964470(+)$1	303	237	264	11.6379
GGCCUGGCAGGGUUCUCCUCCCUGGCA	chr20:2819563-2819833(-)$1	270	44	71	12.3540
CUGUUCUCUGUCCUCUGCAGAGAGCAU	chr3:58520198-58520513(-)$1	315	244	271	11.3011
GUUUGUUUCUGCGUCACAUGAUCUUGG	chr12:121783759-121784010(-)$1	251	176	203	10.5648
GAGGGCACUCGUCGAGUGAGUGGCCUC	chr17:4692816-4693076(+)$1	260	141	168	11.5146
GCCAAGGCGGUAGGUAGCCCCGAGGCC	chr17:7123741-7124002(+)$1	261	98	125	10.8836
GGUGUUAAAAUGUCCGCAGUUGAUGGC	chr2:47637256-47637510(+)$1	254	54	81	7.6561
UGCUCUACCCAGGGAAUGGGUACUGCC	chr17:80050791-80051062(-)$1	271	155	182	11.1627
GAGAAGCACAGAACACCUUGCCUCUCU	chr22:38209297-38209542(+)$1	245	32	59	12.9748
GUGGGCUGUGCAGAGAGGAGAGCCCAG	chr9:123287192-123287466(-)$1	274	47	74	10.9876
GGUGUCAAAGGAAAUCCCCAAGGCUUC	chr14:21967359-21967672(-)$1	313	160	187	13.3685

#DB
(((..((((......))))..))))))	chr17:56082934-56083222(-)$1	1	77	104	7.2611
((((((...(((....)))))))))).	chr17:79663451-79663712(+)$1	1	121	148	8.8039
((((...((((.....))))...))))	chr20:2640897-2641179(-)$1	1	193	220	11.9013
((((....(((.....))).)))))).	chr20:44515676-44515971(-)$1	1	254	281	12.9802
(.((.((((((.....)))))).))))	chr12:6687492-6687813(-)$1	1	27	54	10.9328
(.((((((((((....))).)))))))	chr13:113980077-113980362(-)$1	1	50	77	8.3279
.(.((((..((.....))..)))).))	chr17:76115370-76115657(-)$1	1	8	35	10.8794
((((((((((......))))))).)))	chr16:67178065-67178297(+)$1	1	16	43	8.5760
.(((((..(((.....)))..))))).	chr16:89971133-89971380(+)$1	1	59	86	10.7464
.((.(((((((.....)))).))).))	chr7:889114-889416(+)$1	1	221	248	10.2430
.(((((...((.....))....)))))	chr2:203964167-203964470(+)$1	1	237	264	11.6379
.(((.((.(((.....))).)).))).	chr20:2819563-2819833(-)$1	1	44	71	12.3540
.((((((((((.....)))))))))).	chr3:58520198-58520513(-)$1	1	244	271	11.3011
(((....((((.....)).))....))	chr12:121783759-121784010(-)$1	1	176	203	10.5648
((((.((((((.....)))))).))))	chr17:4692816-4693076(+)$1	1	141	168	11.5146
(((..((.(((.....)))))..))))	chr17:7123741-7124002(+)$1	1	98	125	10.8836
(.((((((..((....)).)))))).)	chr2:47637256-47637510(+)$1	1	54	81	7.6561
.((..((((((.....))))))..)).	chr17:80050791-80051062(-)$1	1	155	182	11.1627
(((..(((.((.....)))))))))))	chr22:38209297-38209542(+)$1	1	32	59	12.9748
(((((((.(.(.....).).)))))).	chr9:123287192-123287466(-)$1	1	47	74	10.9876
((.(((...((.....))...))).))	chr14:21967359-21967672(-)$1	1	160	187	13.3685

#PSSM
f : 0.23	[ : 0.14	: : 0.14	e : 0.09	c : 0.09	g : 0.04	a : 0.04	! : 0.04	h : 0.04	d : 0.04	C : 0.04	
f : 0.28	[ : 0.14	e : 0.14	c : 0.09	b : 0.09	g : 0.04	a : 0.04	= : 0.04	h : 0.04	d : 0.04	
f : 0.28	b : 0.14	e : 0.14	g : 0.09	[ : 0.09	c : 0.09	= : 0.04	h : 0.04	d : 0.04	
! : 0.19	f : 0.19	g : 0.14	e : 0.14	c : 0.09	b : 0.04	d : 0.04	[ : 0.04	= : 0.04	# : 0.04	
! : 0.19	g : 0.14	[ : 0.14	# : 0.09	e : 0.09	c : 0.09	f : 0.09	" : 0.04	d : 0.04	= : 0.04	
f : 0.23	g : 0.14	c : 0.14	d : 0.09	# : 0.09	e : 0.09	b : 0.09	" : 0.04	= : 0.04	
f : 0.23	" : 0.19	d : 0.09	# : 0.09	g : 0.09	c : 0.09	b : 0.09	! : 0.04	= : 0.04	
f : 0.19	d : 0.14	" : 0.14	[ : 0.14	g : 0.09	! : 0.09	# : 0.04	= : 0.04	b : 0.04	c : 0.04	
c : 0.19	d : 0.14	" : 0.14	f : 0.14	g : 0.09	! : 0.09	= : 0.04	b : 0.04	[ : 0.04	a : 0.04	
c : 0.28	b : 0.23	f : 0.14	d : 0.09	o : 0.04	g : 0.04	= : 0.04	! : 0.04	[ : 0.04	
c : 0.28	b : 0.28	f : 0.14	o : 0.09	d : 0.09	= : 0.04	a : 0.04	
n : 0.76	o : 0.09	c : 0.09	b : 0.04	
n : 0.76	m : 0.14	o : 0.09	
n : 0.76	m : 0.14	o : 0.09	
n : 0.76	m : 0.14	o : 0.09	
n : 0.76	m : 0.14	d : 0.04	o : 0.04	
c : 0.28	b : 0.28	d : 0.14	f : 0.14	g : 0.04	= : 0.04	a : 0.04	
c : 0.28	b : 0.28	d : 0.14	f : 0.14	g : 0.04	= : 0.04	] : 0.04	
c : 0.33	d : 0.14	f : 0.14	] : 0.09	2 : 0.04	g : 0.04	4 : 0.04	= : 0.04	a : 0.04	3 : 0.04	
] : 0.19	f : 0.19	2 : 0.14	g : 0.09	d : 0.09	b : 0.09	4 : 0.04	= : 0.04	c : 0.04	3 : 0.04	
f : 0.28	g : 0.14	b : 0.14	2 : 0.09	3 : 0.09	d : 0.04	] : 0.04	4 : 0.04	= : 0.04	c : 0.04	
f : 0.38	g : 0.14	c : 0.09	4 : 0.09	3 : 0.04	d : 0.04	e : 0.04	b : 0.04	= : 0.04	2 : 0.04	
f : 0.23	g : 0.14	] : 0.14	e : 0.09	c : 0.09	2 : 0.09	3 : 0.04	d : 0.04	= : 0.04	4 : 0.04	
f : 0.28	e : 0.14	c : 0.14	g : 0.09	d : 0.09	b : 0.04	] : 0.04	= : 0.04	4 : 0.04	2 : 0.04	
f : 0.28	] : 0.14	e : 0.14	g : 0.09	b : 0.09	c : 0.09	= : 0.04	4 : 0.04	d : 0.04	
f : 0.28	e : 0.19	g : 0.09	c : 0.09	b : 0.09	a : 0.04	= : 0.04	h : 0.04	d : 0.04	] : 0.04	
f : 0.19	: : 0.19	e : 0.14	] : 0.09	d : 0.09	c : 0.09	g : 0.04	b : 0.04	2 : 0.04	h : 0.04	

#score	225.05866993137616
#seq	21
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_UTR_m2_run2.txt

#BEAR
fbb[eeeeea[cccnnnnnccc22a]eeeee]	chr17:27420247-27420461(-)$1	214	150	182	12.1608
cc!!eeeee!!cccnnnnnccc22eeeee444	chr4:184201829-184202153(+)$1	324	209	241	13.5041
ggggggeeeee[aooooooa]eeeee333ggg	chr5:137497385-137497598(-)$1	213	113	145	12.2282
iiiiiiii"""cccnnnnnccc]iiiiiiiii	chr17:62499308-62499528(-)$1	220	103	135	15.1110
iiiiiiii####cccmmmmccc22iiiiiiii	chr3:9512191-9512466(+)$1	275	82	114	14.0010
bb[dddd####bboooooobb333dddd]bb]	chr1:52237640-52237948(+)$1	308	109	141	13.6349
####eeeee!!cccnnnnnccc22eeeee444	chr1:117910225-117910562(+)$1	337	102	134	13.5798
#bb[ggggggg[aooooooa]ggggggg]bb4	chr22:38355328-38355585(+)$1	257	7	39	13.1375
ii!!bb####cccnnnnncccbb22iiiiiii	chr17:78187863-78188158(-)$1	295	142	174	13.3537
cc"""ccca[cccnnnnnccc]a]ccc333cc	chr5:65458169-65458448(+)$1	279	120	152	13.3272
bb####gggggggooooooggggggg>>>>>>	chr8:120844644-120844997(-)$1	353	241	273	11.8544
gggggg[bb[cccooooooccc]bb22ggggg	chr8:117861137-117861363(-)$1	226	178	210	14.0265
===========[aqqqqqqqqa]=========	chr9:134349998-134350265(+)$1	267	190	222	11.5663
========!!cccooooooccc22========	chr17:46919014-46919298(+)$1	284	218	250	18.6197
cc"""bb!!a!!bboooooobb22a22bb22c	chr14:21458383-21458633(+)$1	250	182	214	12.3904
===========qqqqqqqq============]	chr18:55280734-55280992(-)$1	258	36	68	11.4773
ggggdddd!!cccooooooccc22dddd]ggg	chr3:186503690-186503930(+)$1	240	142	174	15.4309
!bb!!dddd[cccooooooccc]dddd22bb]	chr16:67226840-67227157(+)$1	317	113	145	13.3557
fff[ccc"""cccooooooccc333cccffff	chr3:11606173-11606496(-)$1	323	198	230	15.6786
iii=============lll=============	chr9:114135388-114135615(-)$1	227	151	183	14.1894
e:ccc[ccc[cccooooooccc22ccc]ccc:	chr16:22360602-22360856(-)$1	254	71	103	13.4529
hhh[a[bb"""cccnnnnnccc22bb]a]hhh	chr6:35888175-35888406(-)$1	231	158	190	12.5132
======####cccooooooccc333=======	chr11:77335928-77336167(-)$1	239	180	212	18.6184
##eeeee"""ddddmmmmdddd22eeeee333	chr1:70694117-70694374(+)$1	257	9	41	10.8108
=======[cccqqqqqqqqccc22========	chr3:8672458-8672716(-)$1	258	147	179	12.2624
iiiiiiiii[ddddnnnnndddd]iiiiiiii	chr22:24985035-24985315(-)$1	280	45	77	12.2648
ccc!!bb"""cccnnnnnccc333bb22ccc]	chr12:66356920-66357185(+)$1	265	106	138	13.3301
eeeee!!bb[cccooooooccc]bb22eeeee	chr16:279152-279515(-)$1	363	160	192	12.8209
###==========mmmm==========bb444	chr11:66130720-66131144(+)$1	424	329	361	12.1794
eeeeea[ccccccnnnnnccc333ccc]a]ee	chr12:104324164-104324397(+)$1	233	116	148	12.6396
ggg!!ccc"""bbmmmmbbccc22gggggggg	chr3:127842392-127842718(-)$1	326	15	47	11.9037
dddccc[a[ddddoooooodddda]ccc4444	chr6:31728479-31728708(+)$1	229	8	40	12.0626
gggggggggggggooooooggggggg4444gg	chr12:19282632-19282928(+)$1	296	135	167	13.7492
eeeccc####cccnnnnnccc4444ccc22ee	chrX:53439014-53439301(-)$1	287	89	121	13.0647
eeeedddd"""cccmmmmccc333dddd]eee	chr3:71542470-71542748(-)$1	278	186	218	11.5185
a####dddd[cccoooooocccdddd4444a3	chr5:64859122-64859396(+)$1	274	205	237	14.1888
"==========bboooooobb]==========	chr3:71630585-71630850(-)$1	265	190	222	15.7574
b!!ffffffcccbboooooobb22ccc]ffff	chr11:118919717-118920011(-)$1	294	162	194	11.4346
e!!==========oooooo==========22e	chr7:92905373-92905694(+)$1	321	38	70	15.9494
"""iiiiiiiiiaooooooa]iiiiiiiiibb	chr17:74546822-74547166(-)$1	344	112	144	14.5788
eeee"""ccc"""ccclllccc22ccc4444e	chr1:32645812-32646074(+)$1	262	105	137	12.0917
iiiiiii$$$$$aooooooa666666iiiiii	chr15:64422323-64422629(+)$1	306	62	94	12.2353
:eeeee####cccooooooccc22eeeee::F	chr10:35324006-35324275(-)$1	269	230	262	12.0789
&&ggggggg[cccoooooocccggggggg444	chr17:79213056-79213304(+)$1	248	98	130	14.0529
eeee[dddd[cccooooooccc4444dddd22	chr11:67811181-67811448(+)$1	267	100	132	13.6281
g[dddd####cccooooooccc22dddd22gg	chrX:102940049-102940289(-)$1	240	42	74	15.4749
$$$$===========mmmm===========dd	chr19:16503082-16503350(-)$1	268	85	117	11.8244
eee[bb[a!!cccooooooccc22abbeeeee	chr3:50102373-50102620(+)$1	247	157	189	14.7678
iiiiiii####ccclllccc4444iiiiiiii	chr1:165712299-165712602(-)$1	303	134	166	14.2367
==============nnnnn=============	chr1:1560295-1560556(+)$1	261	13	45	14.8083
dddccc[ccc[bboooooobb]ccc]ccc22d	chr20:36687698-36688009(+)$1	311	95	127	11.5069
cccccc[dddd[ccclllccc333dddd]ccc	chr9:114151760-114151998(-)$1	238	144	176	11.2153
[bb!!===========lll===========33	chr11:14515193-14515447(-)$1	254	10	42	13.7813

#otherMatches

#Seq PSSM
GCCGGCUCCCUGCCCAUGCGGCCUGAGGAGUG	chr17:27420247-27420461(-)$1	214	150	182	12.1608
AGAUGGAGACUGGUUAAACACUUAUUUCCUUU	chr4:184201829-184202153(+)$1	324	209	241	13.5041
GGUGAGCCAUGGUCCACCCAGCAUGGUAACUU	chr5:137497385-137497598(-)$1	213	113	145	12.2282
UUUUUAGAGUGUGGAAAAACCAAUCUGAGAAG	chr17:62499308-62499528(-)$1	220	103	135	15.1110
CACUUCUGAGACUGGUUUCCCAAGCAGAAGUG	chr3:9512191-9512466(+)$1	275	82	114	14.0010
GAUCUGCCUCAGUCCUGACACACAGCAGCUCG	chr1:52237640-52237948(+)$1	308	109	141	13.6349
UUAUUUUUUCCACCGCUAAGGUUAAGAGAUUC	chr1:117910225-117910562(+)$1	337	102	134	13.5798
UUUGUCUUGGUGUCCAGGAAGGCCAGGAGAAU	chr22:38355328-38355585(+)$1	257	7	39	13.1375
UAUCCCAGACUGGACCCCCCAGGCCUACGACC	chr17:78187863-78188158(-)$1	295	142	174	13.3537
GUGAAGUUUGUGCGGAUGGCAGGUGAUGAGAC	chr5:65458169-65458448(+)$1	279	120	152	13.3272
GACAAGGGCUUUGAAAGCCCAAGGCCAUAUAA	chr8:120844644-120844997(-)$1	353	241	273	11.8544
GGUAUUGCCGCUGUUGUCUCAGAGGAAAAUGC	chr8:117861137-117861363(-)$1	226	178	210	14.0265
CCGGGAGGGGACGGCCUUUAACAUCUCCUCCU	chr9:134349998-134350265(+)$1	267	190	222	11.5663
GGAUUGGCAUCUUUAGAGUAAGUGGUUAAUUC	chr17:46919014-46919298(+)$1	284	218	250	18.6197
AAGAAACGGGACUGGACCUACAUGCAAGUGAU	chr14:21458383-21458633(+)$1	250	182	214	12.3904
UAAAUGACAUUAUUGAACAAAUGUUGUUUAUU	chr18:55280734-55280992(-)$1	258	36	68	11.4773
AUACCUUUGUAAGUAUUGUCUUUAAGAGAGUA	chr3:186503690-186503930(+)$1	240	142	174	15.4309
ACUGAUUGAGCUCAAGGCAGAGAUCGAGGAGC	chr16:67226840-67227157(+)$1	317	113	145	13.3557
CACACUGACCCCGGGGGAGCGGCAGCAGGUGG	chr3:11606173-11606496(-)$1	323	198	230	15.6786
AUAUGGAGAAAGAAGGUACCUUUCUUUUUCUA	chr9:114135388-114135615(-)$1	227	151	183	14.1894
GCUUCUGUCUGUUCCUCACAGCCUGACUGAAA	chr16:22360602-22360856(-)$1	254	71	103	13.4529
GGAAGUGAGUCUUGUACCCCAACAUCCCAUUC	chr6:35888175-35888406(-)$1	231	158	190	12.5132
AGUGGGUUUUUUGUUUGUUUAGUGUUUCAUUU	chr11:77335928-77336167(-)$1	239	180	212	18.6184
UCUCGUGUCUGCUUUGUUAAGUUCCAUGAUCC	chr1:70694117-70694374(+)$1	257	9	41	10.8108
GGACAUCAAGGUUCAAGGUCCUCCGAUGUUUC	chr3:8672458-8672716(-)$1	258	147	179	12.2624
GGGGUGGAGUUUGCCACCUGCAGCCUCCACCC	chr22:24985035-24985315(-)$1	280	45	77	12.2648
GGAAACUGAAGAGACAUCCUCACAAGAGUCUG	chr12:66356920-66357185(+)$1	265	106	138	13.3301
CGCCUCCGCCGGCUACCAUGUCCGCCCAGGCG	chr16:279152-279515(-)$1	363	160	192	12.8209
AAUGCUGGGUCUAAAUCUGGACCCAGCUCCAC	chr11:66130720-66131144(+)$1	424	329	361	12.1794
CCGGCCGCACGCCAUGAGGGCCCUGUGGGUGC	chr12:104324164-104324397(+)$1	233	116	148	12.6396
CUUCCACCAAUGGAAAGCCGGUCUAGGCGGGC	chr3:127842392-127842718(-)$1	326	15	47	11.9037
GCCCUGGUAGGCAGCUUUGUGCCAGCAGAGGA	chr6:31728479-31728708(+)$1	229	8	40	12.0626
UGCCCCGGUCCUGGACUUACGGGAUCACCAGG	chr12:19282632-19282928(+)$1	296	135	167	13.7492
UGGCAAAAGGGAGAAGGACUCAGAAUUGAACC	chrX:53439014-53439301(-)$1	287	89	121	13.0647
GUUUGUGAUUAUUCAUCUGAAAAUUCACAAGA	chr3:71542470-71542748(-)$1	278	186	218	11.5185
GGAAAGGUAGCUGCAGACAUAGUACCGGGACG	chr5:64859122-64859396(+)$1	274	205	237	14.1888
CGGAGAGCCCCAGGCGGCACUAGGGGUUCUCC	chr3:71630585-71630850(-)$1	265	190	222	15.7574
GAAGCUGAGGCCCCAGUGGAGGAUGGCUCUCA	chr11:118919717-118920011(-)$1	294	162	194	11.4346
AAUUUGUUGaaauuuauuuauuuuaauaauGU	chr7:92905373-92905694(+)$1	321	38	70	15.9494
gagucuuauuuucucaucuguaaaaugaggag	chr17:74546822-74547166(-)$1	344	112	144	14.5788
CUUCUCCUGACCCAGCAUCGCUCAUCACAAUG	chr1:32645812-32646074(+)$1	262	105	137	12.0917
UAAAAGUAAUCUCAUUAAAGUUCUGGGCUUUU	chr15:64422323-64422629(+)$1	306	62	94	12.2353
CCUUUCCUUUGACUUUAUUGUUUUGAAAGAUG	chr10:35324006-35324275(-)$1	269	230	262	12.0789
UAGCCGCUCAUGUCGGCUAACGGAGCGGUGUG	chr17:79213056-79213304(+)$1	248	98	130	14.0529
UUCCACUGCCACGUCUUCCCGUUUCUGCAGCA	chr11:67811181-67811448(+)$1	267	100	132	13.6281
GCCAUAUCUCAUAUCUUUUUAUUUUAUGUUCU	chrX:102940049-102940289(-)$1	240	42	74	15.4749
AUUUUUCCUUCUAGAUCCAUUUGGAGGGGACC	chr19:16503082-16503350(-)$1	268	85	117	11.8244
CUGUGAAGAAGGAAGAGAGUCCCCCUCCAGUA	chr3:50102373-50102620(+)$1	247	157	189	14.7678
GAGAUGACACCACAGACUGUUCCUUCAUUUUC	chr1:165712299-165712602(-)$1	303	134	166	14.2367
GGGCUGGGCUGUGGCUGGCUCAUGGCUCAGCC	chr1:1560295-1560556(+)$1	261	13	45	14.8083
AGACUGAGGAACUAAUCAAAGCUUUGCAGGAU	chr20:36687698-36688009(+)$1	311	95	127	11.5069
GGUCACUGACAAAUCCAUGGUAAGUGUCUGUG	chr9:114151760-114151998(-)$1	238	144	176	11.2153
CCAUUGGAAAGUUUUGCAUUAAAAUUUUCUUU	chr11:14515193-14515447(-)$1	254	10	42	13.7813

#DB
)((.((((((.(((.....)))..).))))).	chr17:27420247-27420461(-)$1	1	150	182	12.1608
((..(((((..(((.....)))..)))))...	chr4:184201829-184202153(+)$1	1	209	241	13.5041
(((((((((((.(......).)))))...)))	chr5:137497385-137497598(-)$1	1	113	145	12.2282
((((((((...(((.....))).)))))))))	chr17:62499308-62499528(-)$1	1	103	135	15.1110
((((((((....(((....)))..))))))))	chr3:9512191-9512466(+)$1	1	82	114	14.0010
((.((((....((......))...)))).)).	chr1:52237640-52237948(+)$1	1	109	141	13.6349
....(((((..(((.....)))..)))))...	chr1:117910225-117910562(+)$1	1	102	134	13.5798
.((.(((((((.(......).))))))).)).	chr22:38355328-38355585(+)$1	1	7	39	13.1375
((..((....(((.....)))))..)))))))	chr17:78187863-78188158(-)$1	1	142	174	13.3537
((...((((.(((.....))).).)))...))	chr5:65458169-65458448(+)$1	1	120	152	13.3272
((....(((((((......)))))))......	chr8:120844644-120844997(-)$1	1	241	273	11.8544
((((((.((.(((......))).))..)))))	chr8:117861137-117861363(-)$1	1	178	210	14.0265
(((((((((((.(........).)))))))))	chr9:134349998-134350265(+)$1	1	190	222	11.5663
((((((((..(((......)))..))))))))	chr17:46919014-46919298(+)$1	1	218	250	18.6197
((...((..(..((......))..)..))..)	chr14:21458383-21458633(+)$1	1	182	214	12.3904
(((((((((((........)))))))))))).	chr18:55280734-55280992(-)$1	1	36	68	11.4773
((((((((..(((......)))..)))).)))	chr3:186503690-186503930(+)$1	1	142	174	15.4309
.((..((((.(((......))).))))..)).	chr16:67226840-67227157(+)$1	1	113	145	13.3557
(((.(((...(((......)))...)))))))	chr3:11606173-11606496(-)$1	1	198	230	15.6786
((((((((((((((((...)))))))))))))	chr9:114135388-114135615(-)$1	1	151	183	14.1894
).(((.(((.(((......)))..))).))).	chr16:22360602-22360856(-)$1	1	71	103	13.4529
(((.(.((...(((.....)))..)).).)))	chr6:35888175-35888406(-)$1	1	158	190	12.5132
((((((....(((......)))...)))))))	chr11:77335928-77336167(-)$1	1	180	212	18.6184
..(((((...((((....))))..)))))...	chr1:70694117-70694374(+)$1	1	9	41	10.8108
(((((((.(((........)))..))))))))	chr3:8672458-8672716(-)$1	1	147	179	12.2624
(((((((((.((((.....)))).))))))))	chr22:24985035-24985315(-)$1	1	45	77	12.2648
(((..((...(((.....)))...))..))).	chr12:66356920-66357185(+)$1	1	106	138	13.3301
(((((..((.(((......))).))..)))))	chr16:279152-279515(-)$1	1	160	192	12.8209
...((((((((((....))))))))))))...	chr11:66130720-66131144(+)$1	1	329	361	12.1794
((((((.((((((.....)))...))).).))	chr12:104324164-104324397(+)$1	1	116	148	12.6396
(((..(((...((....)))))..))))))))	chr3:127842392-127842718(-)$1	1	15	47	11.9037
((((((.(.((((......))))).)))....	chr6:31728479-31728708(+)$1	1	8	40	12.0626
(((((((((((((......)))))))....))	chr12:19282632-19282928(+)$1	1	135	167	13.7492
((((((....(((.....)))....)))..))	chrX:53439014-53439301(-)$1	1	89	121	13.0647
((((((((...(((....)))...)))).)))	chr3:71542470-71542748(-)$1	1	186	218	11.5185
(....((((.(((......)))))))....).	chr5:64859122-64859396(+)$1	1	205	237	14.1888
.((((((((((((......)).))))))))))	chr3:71630585-71630850(-)$1	1	190	222	15.7574
(..(((((((((((......))..))).))))	chr11:118919717-118920011(-)$1	1	162	194	11.4346
(..((((((((((......))))))))))..)	chr7:92905373-92905694(+)$1	1	38	70	15.9494
...((((((((((......).)))))))))))	chr17:74546822-74547166(-)$1	1	112	144	14.5788
((((...(((...(((...)))..)))....)	chr1:32645812-32646074(+)$1	1	105	137	12.0917
(((((((.....(......)......))))))	chr15:64422323-64422629(+)$1	1	62	94	12.2353
.(((((....(((......)))..)))))..)	chr10:35324006-35324275(-)$1	1	230	262	12.0789
..(((((((.(((......))))))))))...	chr17:79213056-79213304(+)$1	1	98	130	14.0529
((((.((((.(((......)))....))))..	chr11:67811181-67811448(+)$1	1	100	132	13.6281
(.((((....(((......)))..))))..))	chrX:102940049-102940289(-)$1	1	42	74	15.4749
....(((((((((((....)))))))))))))	chr19:16503082-16503350(-)$1	1	85	117	11.8244
(((.((.(..(((......)))..))))))))	chr3:50102373-50102620(+)$1	1	157	189	14.7678
(((((((....(((...)))....))))))))	chr1:165712299-165712602(-)$1	1	134	166	14.2367
((((((((((((((.....)))))))))))))	chr1:1560295-1560556(+)$1	1	13	45	14.8083
((((((.(((.((......)).))).)))..)	chr20:36687698-36688009(+)$1	1	95	127	11.5069
((((((.((((.(((...)))...)))).)))	chr9:114151760-114151998(-)$1	1	144	176	11.2153
.((..(((((((((((...)))))))))))..	chr11:14515193-14515447(-)$1	1	10	42	13.7813

#PSSM
e : 0.16	i : 0.13	g : 0.11	= : 0.11	c : 0.09	# : 0.07	b : 0.05	f : 0.03	d : 0.03	" : 0.03	! : 0.01	h : 0.01	a : 0.01	: : 0.01	& : 0.01	$ : 0.01	[ : 0.01	
e : 0.15	i : 0.13	= : 0.13	b : 0.11	c : 0.09	g : 0.09	# : 0.07	d : 0.03	! : 0.03	f : 0.01	: : 0.01	h : 0.01	" : 0.01	& : 0.01	[ : 0.01	$ : 0.01	
e : 0.16	= : 0.13	g : 0.11	i : 0.11	b : 0.07	! : 0.07	# : 0.07	" : 0.05	c : 0.05	d : 0.05	[ : 0.01	f : 0.01	h : 0.01	$ : 0.01	
= : 0.18	e : 0.13	! : 0.11	i : 0.11	[ : 0.09	g : 0.09	c : 0.09	# : 0.05	d : 0.03	" : 0.03	f : 0.01	$ : 0.01	
= : 0.20	e : 0.13	i : 0.11	c : 0.11	g : 0.09	d : 0.07	! : 0.07	" : 0.05	b : 0.03	# : 0.03	a : 0.01	f : 0.01	[ : 0.01	
= : 0.22	d : 0.13	c : 0.13	i : 0.11	e : 0.09	g : 0.09	b : 0.07	[ : 0.03	# : 0.01	! : 0.01	a : 0.01	f : 0.01	" : 0.01	
= : 0.20	i : 0.11	d : 0.11	[ : 0.11	e : 0.09	# : 0.09	g : 0.07	c : 0.07	b : 0.05	! : 0.01	f : 0.01	" : 0.01	
= : 0.18	# : 0.13	c : 0.11	d : 0.11	e : 0.07	i : 0.07	g : 0.07	b : 0.05	" : 0.05	a : 0.03	! : 0.01	[ : 0.01	f : 0.01	$ : 0.01	
= : 0.16	# : 0.15	" : 0.13	c : 0.09	e : 0.07	g : 0.07	! : 0.07	d : 0.07	b : 0.03	i : 0.03	a : 0.01	[ : 0.01	f : 0.01	$ : 0.01	
[ : 0.16	= : 0.16	# : 0.15	" : 0.13	! : 0.09	c : 0.09	g : 0.05	a : 0.03	d : 0.03	e : 0.01	i : 0.01	$ : 0.01	
c : 0.39	= : 0.16	" : 0.09	d : 0.07	! : 0.05	# : 0.05	g : 0.05	[ : 0.03	e : 0.01	i : 0.01	$ : 0.01	
c : 0.50	= : 0.11	[ : 0.07	b : 0.07	d : 0.05	g : 0.03	q : 0.03	# : 0.01	! : 0.01	i : 0.01	" : 0.01	$ : 0.01	
c : 0.52	b : 0.11	= : 0.11	a : 0.09	d : 0.05	g : 0.03	q : 0.03	" : 0.01	
o : 0.47	c : 0.18	n : 0.09	= : 0.07	q : 0.05	b : 0.03	d : 0.03	m : 0.03	
o : 0.50	n : 0.22	m : 0.07	c : 0.05	q : 0.05	= : 0.05	l : 0.01	
o : 0.50	n : 0.22	m : 0.11	q : 0.05	= : 0.03	l : 0.03	c : 0.01	
o : 0.50	n : 0.22	m : 0.11	l : 0.09	q : 0.05	
o : 0.50	n : 0.22	m : 0.07	l : 0.07	q : 0.05	= : 0.01	b : 0.01	c : 0.01	
o : 0.50	c : 0.15	n : 0.13	q : 0.05	l : 0.05	m : 0.03	d : 0.01	= : 0.01	b : 0.01	
c : 0.58	= : 0.13	a : 0.07	b : 0.05	d : 0.05	g : 0.03	o : 0.03	q : 0.01	
c : 0.56	= : 0.13	b : 0.09	] : 0.05	d : 0.05	g : 0.03	q : 0.01	6 : 0.01	4 : 0.01	
c : 0.43	= : 0.13	3 : 0.09	g : 0.05	b : 0.05	] : 0.05	d : 0.05	4 : 0.03	e : 0.01	a : 0.01	i : 0.01	6 : 0.01	
2 : 0.32	= : 0.15	3 : 0.13	] : 0.09	g : 0.07	d : 0.05	4 : 0.05	e : 0.01	b : 0.01	a : 0.01	i : 0.01	6 : 0.01	c : 0.01	
2 : 0.33	= : 0.16	3 : 0.13	g : 0.07	4 : 0.05	i : 0.03	] : 0.03	b : 0.03	d : 0.03	e : 0.01	a : 0.01	6 : 0.01	c : 0.01	
= : 0.20	d : 0.13	c : 0.11	e : 0.09	i : 0.09	g : 0.09	b : 0.07	a : 0.05	3 : 0.03	4 : 0.03	2 : 0.01	] : 0.01	6 : 0.01	
= : 0.22	c : 0.15	d : 0.13	i : 0.11	e : 0.09	g : 0.09	2 : 0.05	b : 0.05	] : 0.03	6 : 0.01	4 : 0.01	
= : 0.22	c : 0.16	i : 0.13	d : 0.13	e : 0.09	2 : 0.07	g : 0.05	4 : 0.03	3 : 0.01	> : 0.01	] : 0.01	b : 0.01	
= : 0.20	e : 0.13	i : 0.13	d : 0.11	g : 0.07	c : 0.07	] : 0.05	4 : 0.05	3 : 0.03	b : 0.03	2 : 0.03	> : 0.01	a : 0.01	
= : 0.20	e : 0.13	i : 0.13	] : 0.11	4 : 0.07	g : 0.05	2 : 0.05	c : 0.05	3 : 0.03	b : 0.03	f : 0.03	> : 0.01	a : 0.01	d : 0.01	
= : 0.18	4 : 0.15	i : 0.13	2 : 0.09	e : 0.07	g : 0.07	b : 0.05	c : 0.05	3 : 0.03	f : 0.03	> : 0.01	h : 0.01	] : 0.01	: : 0.01	d : 0.01	
= : 0.15	e : 0.11	4 : 0.11	g : 0.11	i : 0.11	b : 0.07	c : 0.07	2 : 0.07	f : 0.03	3 : 0.03	> : 0.01	h : 0.01	a : 0.01	: : 0.01	d : 0.01	
= : 0.13	e : 0.13	4 : 0.11	g : 0.11	i : 0.11	] : 0.09	c : 0.05	3 : 0.05	f : 0.03	d : 0.03	> : 0.01	: : 0.01	h : 0.01	b : 0.01	F : 0.01	2 : 0.01	

#score	709.4328292485884
#seq	53
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_CDS_m2_run1.txt

#BEAR
!eeeeettttttttttteeeee6	chr12:76448726-76448970(-)$1	244	123	146	21.1396
eeeeeuuuuuuuuuuuueeeee:	chr20:39709719-39709981(+)$1	262	145	168	22.2211
a!!ccctttttttttttccca]f	chr3:142761856-142762071(+)$1	215	166	189	21.4740
eeeeettttttttttteeeeeff	chr6:18236634-18236900(-)$1	266	189	212	21.0569
[cccwwwwwwwwwwwwwwccc]g	chr7:102952595-102952902(+)$1	307	241	264	22.4198
[ddddvvvvvvvvvvvvvdddd]	chr20:60711811-60712107(-)$1	296	185	208	22.5315
ggggggtttttttttttgggggg	chr5:140698594-140698877(-)$1	283	196	219	20.9793
ffyyyyyyyyyyyyyyyyfffff	chr2:29169490-29169765(+)$1	275	172	195	20.3962
eeeeeuuuuuuuuuuuueeeee4	chr4:437922-438197(-)$1	275	155	178	23.0886
ddddwwwwwwwwwwwwwwdddd3	chrX:76907530-76907929(-)$1	399	157	180	21.9748
[eeeeettttttttttteeeee2	chr6:31856963-31857220(-)$1	257	65	88	21.4370
c[bbwwwwwwwwwwwwwwbb]cc	chr4:54325439-54325740(+)$1	301	42	65	21.2184
ggggguuuuuuuuuuuugggggg	chr14:21821545-21821791(-)$1	246	69	92	22.7393
hhhhhuuuuuuuuuuuuhhhhhh	chrX:64737824-64738092(-)$1	268	171	194	20.7755
cccxxxxxxxxxxxxxxxcccff	chr20:13756481-13756854(-)$1	373	295	318	18.0266
eeeewwwwwwwwwwwwwweeeee	chr5:162902416-162902758(+)$1	342	116	139	22.5327
gggxxxxxxxxxxxxxxxggggg	chr5:95099111-95099398(+)$1	287	171	194	18.1764
hhbbwwwwwwwwwwwwwwbb]hh	chr5:162910204-162910445(+)$1	241	46	69	20.6581
eeeeevvvvvvvvvvvvveeeee	chr2:99980007-99980389(+)$1	382	284	307	22.9727
ddddvvvvvvvvvvvvvdddd33	chr2:26321443-26321692(+)$1	249	92	115	22.1160
ddddvvvvvvvvvvvvvddddFF	chr1:71537762-71538017(-)$1	255	120	143	21.3732
bbb[bbtttttttttttbbbb]b	chr15:44107043-44107297(-)$1	254	101	124	19.0878
ee[ccctttttttttttccc]ee	chr1:76260167-76260452(+)$1	285	184	207	21.6196
eeeeevvvvvvvvvvvvveeeee	chr12:6879030-6879258(+)$1	228	192	215	22.9727
[ddddvvvvvvvvvvvvvdddd]	chr2:153520080-153520351(-)$1	271	93	116	22.5315
hhhhhuuuuuuuuuuuuhhhhhh	chr14:35264791-35265072(-)$1	281	19	42	20.7755
eeeeevvvvvvvvvvvvveeeee	chr2:99980189-99980426(+)$1	237	102	125	22.9727
ffffwwwwwwwwwwwwwwfffff	chr1:94341823-94342084(-)$1	261	168	191	21.8748
:eeeeettttttttttteeeee:	chr1:150192956-150193164(-)$1	208	37	60	19.5834
hhhhhhttttttttttthhhhhh	chr3:186507603-186507937(-)$1	334	113	136	18.7834
fffffvvvvvvvvvvvvvfffff	chr1:205689645-205689882(-)$1	237	55	78	22.1670
fffffuuuuuuuuuuuuffffff	chr3:37366602-37366869(+)$1	267	243	266	22.1757
fffffvvvvvvvvvvvvvfffff	chr11:57093786-57094034(-)$1	248	163	186	22.1670
ffffwwwwwwwwwwwwwwfffff	chr1:94341748-94342023(-)$1	275	107	130	21.8748
h::bbuuuuuuuuuuuubb:ddd	chr1:205692968-205693193(-)$1	225	39	62	18.4720
++cccuuuuuuuuuuuuccc>>>	chr9:139734671-139734912(+)$1	241	112	135	20.8540
hhhhhuuuuuuuuuuuuhhhhhh	chr10:12077037-12077324(-)$1	287	254	277	20.7755
"ddddtttttttttttdddd333	chr1:70716374-70716641(+)$1	267	135	158	20.3998
ffyyyyyyyyyyyyyyyyfffff	chr1:150198839-150199108(-)$1	269	120	143	20.3962
cccwwwwwwwwwwwwwwcccggg	chr10:70532661-70532958(+)$1	297	15	38	21.6664
f[bbwwwwwwwwwwwwwwbbfff	chr13:111545288-111545560(-)$1	272	46	69	21.2929
:dddduuuuuuuuuuuudddd::	chr2:190340003-190340299(+)$1	296	52	75	19.6721
eeeeevvvvvvvvvvvvveeeee	chr2:47388759-47389003(-)$1	244	115	138	22.9727
eeeeevvvvvvvvvvvvveeeee	chr12:6879222-6879427(+)$1	205	0	23	22.9727
[dddduuuuuuuuuuuudddd]e	chr2:170668075-170668376(+)$1	301	202	225	22.7350
hhh[auuuuuuuuuuuuahhhhh	chr7:148514879-148515161(-)$1	282	197	220	21.9860
:dddduuuuuuuuuuuudddd::	chr1:52305876-52306147(-)$1	271	4	27	19.6721
##cccuuuuuuuuuuuuccc444	chr5:68660572-68660894(-)$1	322	55	78	22.4638
dddyyyyyyyyyyyyyyyydddd	chr1:171501813-171502084(+)$1	271	32	55	20.1549
eeeyyyyyyyyyyyyyyyyeeee	chr15:40488782-40489075(+)$1	293	69	92	20.8349
fffxxxxxxxxxxxxxxxfffff	chr9:131456189-131456396(+)$1	207	164	187	17.7850
b[ddddtttttttttttdddd]b	chr18:9516857-9517167(+)$1	310	110	133	20.6124
eeeeeuuuuuuuuuuuueeeee2	chr7:91708335-91708692(+)$1	357	206	229	22.9792
dddyyyyyyyyyyyyyyyydddd	chr1:171501695-171502013(+)$1	318	150	173	20.1549
ffffwwwwwwwwwwwwwwfffff	chr12:42707575-42707808(-)$1	233	137	160	21.8748
=====vvvvvvvvvvvvv=====	chr7:117831866-117832217(+)$1	351	43	66	22.4820
ddd[attttttttttta]ddddb	chr2:232577058-232577268(+)$1	210	153	176	20.9736
[dddduuuuuuuuuuuudddd]b	chr1:111490554-111490815(-)$1	261	175	198	22.5730
ddddwwwwwwwwwwwwwwdddd5	chr15:50773906-50774218(+)$1	312	264	287	21.1507
ggggguuuuuuuuuuuugggggg	chr2:170487368-170487599(+)$1	231	124	147	22.7393
fffbbuuuuuuuuuuuubb]fff	chr2:47387784-47388043(-)$1	259	222	245	21.8184
ggggggtttttttttttgggggg	chr8:38178445-38178791(-)$1	346	281	304	20.9793
fffffvvvvvvvvvvvvvfffff	chr15:59205601-59205988(-)$1	387	205	228	22.1670
g!!ccctttttttttttccc22g	chr9:100774627-100774854(+)$1	227	73	96	21.1458
cccxxxxxxxxxxxxxxxccc22	chr11:129991479-129991802(+)$1	323	207	230	17.6825
eeeewwwwwwwwwwwwwweeeee	chr14:73572803-73573092(+)$1	289	238	261	22.5327
eeeeevvvvvvvvvvvvveeeee	chr2:203167633-203167881(+)$1	248	36	59	22.9727
ffffwwwwwwwwwwwwwwfffff	chr2:232326567-232326824(-)$1	257	206	229	21.8748
bb[ccctttttttttttccc]bb	chr9:100774602-100774804(+)$1	202	140	163	20.4844

#otherMatches

#Seq PSSM
GCACUUGAAAGAUAUUAAAGUGA	chr12:76448726-76448970(-)$1	244	123	146	21.1396
ACUAGAAGAAGAAGAGGUUAGUA	chr20:39709719-39709981(+)$1	262	145	168	22.2211
UACUCUAAUCCAAUCAAAGAAGA	chr3:142761856-142762071(+)$1	215	166	189	21.4740
AAGUCACAAUGAAACAGAUUUGC	chr6:18236634-18236900(-)$1	266	189	212	21.0569
AAGGAUAAAAAGACUACCCCUCU	chr7:102952595-102952902(+)$1	307	241	264	22.4198
AGCAUCAUGAUGAAUAAAAUGUC	chr20:60711811-60712107(-)$1	296	185	208	22.5315
AAUCUGGCUCUCAAGAACAGAUU	chr5:140698594-140698877(-)$1	283	196	219	20.9793
GGUCAAACUAUAUAAACUCUGGC	chr2:29169490-29169765(+)$1	275	172	195	20.3962
UGCUUGUCAAAUACUCAGAGCAA	chr4:437922-438197(-)$1	275	155	178	23.0886
ggaagaUGAAAAUGAUGAUUCCA	chrX:76907530-76907929(-)$1	399	157	180	21.9748
UGAGGGUUCCUAACUCCUCCUCC	chr6:31856963-31857220(-)$1	257	65	88	21.4370
CGCCAUGAAAGUGAAGAAGGAGA	chr4:54325439-54325740(+)$1	301	42	65	21.2184
UAUUCUAAGGAGUCAUUGGGUAG	chr14:21821545-21821791(-)$1	246	69	92	22.7393
CUUCUGGCCCAGAAAAGAGGAGC	chrX:64737824-64738092(-)$1	268	171	194	20.7755
CUUGGAGAGAAUUAGAUAAAGAU	chr20:13756481-13756854(-)$1	373	295	318	18.0266
UUUGAGGAAGAAUUAAAGCAAAC	chr5:162902416-162902758(+)$1	342	116	139	22.5327
GUAAUCGAGAAAGUUAAAUGCAU	chr5:95099111-95099398(+)$1	287	171	194	18.1764
CUCAAUUUAAUUCUUCCAUGCAG	chr5:162910204-162910445(+)$1	241	46	69	20.6581
GCUUGAAGAAUUAGAAGCCAAGC	chr2:99980007-99980389(+)$1	382	284	307	22.9727
GACUUCAAGAUCAAAACAGUUGA	chr2:26321443-26321692(+)$1	249	92	115	22.1160
UCCUGCAUCUAUAUUaaaggaag	chr1:71537762-71538017(-)$1	255	120	143	21.3732
CGCAUGGAACGAGAAGACAGCAG	chr15:44107043-44107297(-)$1	254	101	124	19.0878
GUUGCAUAGUAUAGUUUUGCCAU	chr1:76260167-76260452(+)$1	285	184	207	21.6196
UCAGGGUGGGUUUGAAGACCUGA	chr12:6879030-6879258(+)$1	228	192	215	22.9727
ACUACUUUUGAAGAUUUUGUGGC	chr2:153520080-153520351(-)$1	271	93	116	22.5315
uuucuaacaaguucucaggagau	chr14:35264791-35265072(-)$1	281	19	42	20.7755
GCUUGAAGAAUUAGAAGCCAAGC	chr2:99980189-99980426(+)$1	237	102	125	22.9727
ugaaaaaagugaagaagaUUCAU	chr1:94341823-94342084(-)$1	261	168	191	21.8748
AAAAUGUAACCAAUCCUCAUUUG	chr1:150192956-150193164(-)$1	208	37	60	19.5834
UGAUGAACAUUUGCAACUCAUCA	chr3:186507603-186507937(-)$1	334	113	136	18.7834
UAUAAAAUUCUUUAAUCAUUAUA	chr1:205689645-205689882(-)$1	237	55	78	22.1670
CUAGUUGAACUGAAGAUGCUGGC	chr3:37366602-37366869(+)$1	267	243	266	22.1757
AAGGUUCUCUUUGCGCUUGCCUU	chr11:57093786-57094034(-)$1	248	163	186	22.1670
ugaaaaaagugaagaagaUUCAU	chr1:94341748-94342023(-)$1	275	107	130	21.8748
UGAGCUAAGACUUUUAUGCAUUU	chr1:205692968-205693193(-)$1	225	39	62	18.4720
aagcugccaagaagaagagcaaa	chr9:139734671-139734912(+)$1	241	112	135	20.8540
CUGCUCAGAUGAAGUAAGGCAGU	chr10:12077037-12077324(-)$1	287	254	277	20.7755
AACUGUAUACCUGCAUCAGUGUC	chr1:70716374-70716641(+)$1	267	135	158	20.3998
GGGAGAAGAGGAAGUGGGCCUCU	chr1:150198839-150199108(-)$1	269	120	143	20.3962
gggcaauauggcaaaaccccguc	chr10:70532661-70532958(+)$1	297	15	38	21.6664
UCUGAACCAUUUCUAUAACAAUG	chr13:111545288-111545560(-)$1	272	46	69	21.2929
AGACAUUAUACAUCAGUUGUCAA	chr2:190340003-190340299(+)$1	296	52	75	19.6721
AUGGUGAUGGUCAAGUAAACUAU	chr2:47388759-47389003(-)$1	244	115	138	22.9727
UCAGGGUGGGUUUGAAGACCUGA	chr12:6879222-6879427(+)$1	205	0	23	22.9727
AAUUUUUUAUUCAUUUUAAAUAG	chr2:170668075-170668376(+)$1	301	202	225	22.7350
GACACGUCUAAUAACUGGGUUUU	chr7:148514879-148515161(-)$1	282	197	220	21.9860
GACCUAAGUAAUAUGGAAGGUAA	chr1:52305876-52306147(-)$1	271	4	27	19.6721
UGCAUUGAAAAGAAAACGugaag	chr5:68660572-68660894(-)$1	322	55	78	22.4638
agcaggaaaaggagaaagagcug	chr1:171501813-171502084(+)$1	271	32	55	20.1549
UCUGAGGAGAAGAAAGAGAAGAU	chr15:40488782-40489075(+)$1	293	69	92	20.8349
AACUUUUAAAGAAUUCAUGUUAU	chr9:131456189-131456396(+)$1	207	164	187	17.7850
gauuuuaaaauaaaagagaaacc	chr18:9516857-9517167(+)$1	310	110	133	20.6124
UAUUGGACAGAAGACAUCAAUGA	chr7:91708335-91708692(+)$1	357	206	229	22.9792
agcaggaaaaggagaaagagcug	chr1:171501695-171502013(+)$1	318	150	173	20.1549
GUAUAUUAUUCUUACUAAAUACA	chr12:42707575-42707808(-)$1	233	137	160	21.8748
UGAAACACAUGUAAUUUAUUUCA	chr7:117831866-117832217(+)$1	351	43	66	22.4820
GCUGAAGAUGAUGAGGUGGGUUC	chr2:232577058-232577268(+)$1	210	153	176	20.9736
GUGCUGAGAGAGAAAGAAGCAGC	chr1:111490554-111490815(-)$1	261	175	198	22.5730
GGGGGAAAAGGUGUCCAACCCCA	chr15:50773906-50774218(+)$1	312	264	287	21.1507
AAGAGGUCUUAAUUUUACUUUUC	chr2:170487368-170487599(+)$1	231	124	147	22.7393
UGUCAAAAAAAUAUGCAUGUAUA	chr2:47387784-47388043(-)$1	259	222	245	21.8184
AAACUUUCCCCCACACUGAGUUU	chr8:38178445-38178791(-)$1	346	281	304	20.9793
UCUCUGCAGAAGAAAACAAGAGA	chr15:59205601-59205988(-)$1	387	205	228	22.1670
AGGAAGAAGAAUUUGGACUUGAU	chr9:100774627-100774854(+)$1	227	73	96	21.1458
aCUAUGAUGUUUAUAAAAGGUAA	chr11:129991479-129991802(+)$1	323	207	230	17.6825
UGUAUCUUUACUGCUAACUACAA	chr14:73572803-73573092(+)$1	289	238	261	22.5327
gcagaagaagaagaaacaucugu	chr2:203167633-203167881(+)$1	248	36	59	22.9727
UGUCACUCCAGGCAAAAAGGCAG	chr2:232326567-232326824(-)$1	257	206	229	21.8748
AUGAGGAUGAAGGUGGGCCUAAU	chr9:100774602-100774804(+)$1	202	140	163	20.4844

#DB
.(((((...........))))).	chr12:76448726-76448970(-)$1	1	123	146	21.1396
(((((............))))).	chr20:39709719-39709981(+)$1	1	145	168	22.2211
(..(((...........)))).)	chr3:142761856-142762071(+)$1	1	166	189	21.4740
(((((...........)))))((	chr6:18236634-18236900(-)$1	1	189	212	21.0569
.(((..............))).)	chr7:102952595-102952902(+)$1	1	241	264	22.4198
.((((.............)))).	chr20:60711811-60712107(-)$1	1	185	208	22.5315
((((((...........))))))	chr5:140698594-140698877(-)$1	1	196	219	20.9793
((................)))))	chr2:29169490-29169765(+)$1	1	172	195	20.3962
(((((............))))).	chr4:437922-438197(-)$1	1	155	178	23.0886
((((..............)))).	chrX:76907530-76907929(-)$1	1	157	180	21.9748
.(((((...........))))).	chr6:31856963-31857220(-)$1	1	65	88	21.4370
(.((..............)).))	chr4:54325439-54325740(+)$1	1	42	65	21.2184
(((((............))))))	chr14:21821545-21821791(-)$1	1	69	92	22.7393
(((((............))))))	chrX:64737824-64738092(-)$1	1	171	194	20.7755
(((...............)))))	chr20:13756481-13756854(-)$1	1	295	318	18.0266
((((..............)))))	chr5:162902416-162902758(+)$1	1	116	139	22.5327
(((...............)))))	chr5:95099111-95099398(+)$1	1	171	194	18.1764
((((..............)).))	chr5:162910204-162910445(+)$1	1	46	69	20.6581
(((((.............)))))	chr2:99980007-99980389(+)$1	1	284	307	22.9727
((((.............))))..	chr2:26321443-26321692(+)$1	1	92	115	22.1160
((((.............))))))	chr1:71537762-71538017(-)$1	1	120	143	21.3732
(((.((...........)))).)	chr15:44107043-44107297(-)$1	1	101	124	19.0878
((.(((...........))).))	chr1:76260167-76260452(+)$1	1	184	207	21.6196
(((((.............)))))	chr12:6879030-6879258(+)$1	1	192	215	22.9727
.((((.............)))).	chr2:153520080-153520351(-)$1	1	93	116	22.5315
(((((............))))))	chr14:35264791-35265072(-)$1	1	19	42	20.7755
(((((.............)))))	chr2:99980189-99980426(+)$1	1	102	125	22.9727
((((..............)))))	chr1:94341823-94342084(-)$1	1	168	191	21.8748
.(((((...........))))).	chr1:150192956-150193164(-)$1	1	37	60	19.5834
((((((...........))))))	chr3:186507603-186507937(-)$1	1	113	136	18.7834
(((((.............)))))	chr1:205689645-205689882(-)$1	1	55	78	22.1670
(((((............))))))	chr3:37366602-37366869(+)$1	1	243	266	22.1757
(((((.............)))))	chr11:57093786-57094034(-)$1	1	163	186	22.1670
((((..............)))))	chr1:94341748-94342023(-)$1	1	107	130	21.8748
)..((............)).(((	chr1:205692968-205693193(-)$1	1	39	62	18.4720
..(((............)))...	chr9:139734671-139734912(+)$1	1	112	135	20.8540
(((((............))))))	chr10:12077037-12077324(-)$1	1	254	277	20.7755
.((((...........))))...	chr1:70716374-70716641(+)$1	1	135	158	20.3998
((................)))))	chr1:150198839-150199108(-)$1	1	120	143	20.3962
(((..............)))(((	chr10:70532661-70532958(+)$1	1	15	38	21.6664
(.((..............)))))	chr13:111545288-111545560(-)$1	1	46	69	21.2929
.((((............))))..	chr2:190340003-190340299(+)$1	1	52	75	19.6721
(((((.............)))))	chr2:47388759-47389003(-)$1	1	115	138	22.9727
(((((.............)))))	chr12:6879222-6879427(+)$1	1	0	23	22.9727
.((((............)))).)	chr2:170668075-170668376(+)$1	1	202	225	22.7350
(((.(............))))))	chr7:148514879-148515161(-)$1	1	197	220	21.9860
.((((............))))..	chr1:52305876-52306147(-)$1	1	4	27	19.6721
..(((............)))...	chr5:68660572-68660894(-)$1	1	55	78	22.4638
(((................))))	chr1:171501813-171502084(+)$1	1	32	55	20.1549
(((................))))	chr15:40488782-40489075(+)$1	1	69	92	20.8349
(((...............)))))	chr9:131456189-131456396(+)$1	1	164	187	17.7850
(.((((...........)))).)	chr18:9516857-9517167(+)$1	1	110	133	20.6124
(((((............))))).	chr7:91708335-91708692(+)$1	1	206	229	22.9792
(((................))))	chr1:171501695-171502013(+)$1	1	150	173	20.1549
((((..............)))))	chr12:42707575-42707808(-)$1	1	137	160	21.8748
(((((.............)))))	chr7:117831866-117832217(+)$1	1	43	66	22.4820
(((.(...........).)))))	chr2:232577058-232577268(+)$1	1	153	176	20.9736
.((((............)))).)	chr1:111490554-111490815(-)$1	1	175	198	22.5730
((((..............)))).	chr15:50773906-50774218(+)$1	1	264	287	21.1507
(((((............))))))	chr2:170487368-170487599(+)$1	1	124	147	22.7393
(((((............)).)))	chr2:47387784-47388043(-)$1	1	222	245	21.8184
((((((...........))))))	chr8:38178445-38178791(-)$1	1	281	304	20.9793
(((((.............)))))	chr15:59205601-59205988(-)$1	1	205	228	22.1670
(..(((...........)))..)	chr9:100774627-100774854(+)$1	1	73	96	21.1458
(((...............)))..	chr11:129991479-129991802(+)$1	1	207	230	17.6825
((((..............)))))	chr14:73572803-73573092(+)$1	1	238	261	22.5327
(((((.............)))))	chr2:203167633-203167881(+)$1	1	36	59	22.9727
((((..............)))))	chr2:232326567-232326824(-)$1	1	206	229	21.8748
((.(((...........))).))	chr9:100774602-100774804(+)$1	1	140	163	20.4844

#PSSM
e : 0.20	f : 0.18	d : 0.10	h : 0.10	[ : 0.08	g : 0.08	c : 0.05	b : 0.04	: : 0.04	! : 0.01	a : 0.01	+ : 0.01	" : 0.01	# : 0.01	= : 0.01	
e : 0.24	d : 0.20	f : 0.17	h : 0.08	g : 0.07	c : 0.05	[ : 0.04	! : 0.02	b : 0.02	: : 0.01	+ : 0.01	# : 0.01	= : 0.01	
e : 0.23	d : 0.21	f : 0.14	c : 0.08	g : 0.07	h : 0.07	b : 0.05	! : 0.02	y : 0.02	[ : 0.02	: : 0.01	= : 0.01	
e : 0.21	d : 0.17	f : 0.11	c : 0.10	y : 0.07	b : 0.07	g : 0.05	h : 0.05	x : 0.05	[ : 0.04	w : 0.01	= : 0.01	
e : 0.18	w : 0.18	d : 0.11	c : 0.08	y : 0.07	g : 0.05	h : 0.05	x : 0.05	f : 0.05	b : 0.04	v : 0.02	a : 0.02	= : 0.01	
u : 0.26	v : 0.20	w : 0.18	y : 0.07	c : 0.05	x : 0.05	e : 0.04	t : 0.04	g : 0.02	b : 0.01	h : 0.01	d : 0.01	
u : 0.26	t : 0.21	v : 0.20	w : 0.18	y : 0.07	x : 0.05	
u : 0.26	t : 0.21	v : 0.20	w : 0.18	y : 0.07	x : 0.05	
u : 0.26	t : 0.21	v : 0.20	w : 0.18	y : 0.07	x : 0.05	
u : 0.26	t : 0.21	v : 0.20	w : 0.18	y : 0.07	x : 0.05	
u : 0.26	t : 0.21	v : 0.20	w : 0.18	y : 0.07	x : 0.05	
u : 0.26	t : 0.21	v : 0.20	w : 0.18	y : 0.07	x : 0.05	
u : 0.26	t : 0.21	v : 0.20	w : 0.18	y : 0.07	x : 0.05	
u : 0.26	t : 0.21	v : 0.20	w : 0.18	y : 0.07	x : 0.05	
u : 0.26	t : 0.21	v : 0.20	w : 0.18	y : 0.07	x : 0.05	
u : 0.26	t : 0.21	v : 0.20	w : 0.18	y : 0.07	x : 0.05	
u : 0.26	v : 0.20	w : 0.18	t : 0.17	y : 0.07	x : 0.05	e : 0.01	d : 0.01	a : 0.01	
w : 0.17	v : 0.17	d : 0.11	e : 0.10	c : 0.10	y : 0.07	g : 0.05	h : 0.05	x : 0.05	b : 0.04	f : 0.01	a : 0.01	] : 0.01	
e : 0.21	d : 0.18	f : 0.15	c : 0.14	b : 0.08	g : 0.07	h : 0.07	y : 0.04	= : 0.01	
e : 0.23	d : 0.21	f : 0.15	c : 0.14	g : 0.07	h : 0.07	b : 0.05	: : 0.01	= : 0.01	] : 0.01	
e : 0.23	d : 0.21	f : 0.18	g : 0.08	h : 0.07	] : 0.05	c : 0.04	a : 0.01	b : 0.01	> : 0.01	3 : 0.01	4 : 0.01	= : 0.01	2 : 0.01	
e : 0.23	f : 0.21	d : 0.11	] : 0.08	g : 0.08	h : 0.08	3 : 0.02	: : 0.02	2 : 0.02	c : 0.01	F : 0.01	> : 0.01	4 : 0.01	= : 0.01	b : 0.01	
f : 0.23	e : 0.15	g : 0.11	h : 0.08	b : 0.07	: : 0.05	3 : 0.04	2 : 0.04	d : 0.04	] : 0.02	4 : 0.02	6 : 0.01	c : 0.01	F : 0.01	> : 0.01	= : 0.01	5 : 0.01	

#score	1470.200568164319
#seq	69
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_transcript_m2_run1.txt

#BEAR
[ccc[cccnnnnnccc]ccc	chr19:49993690-49993912(+)$1	222	124	144	11.7137
cgggggggnnnnnggggggg	chr16:2012638-2012866(-)$1	228	139	159	11.4180
hhhhhhbbnnnnnbb333hh	chr16:89036894-89037144(-)$1	250	136	156	10.1569
:a[eeeeennnnneeeee]a	chrX:153594330-153594541(-)$1	211	10	30	10.7894
:a[eeeeennnnneeeee]a	chrX:153594420-153594649(-)$1	229	118	138	10.7894
bb!!ddddnnnnndddd]bb	chr13:46726862-46727133(-)$1	271	127	147	10.4498
ccc"""bbnnnnnbb333cc	chr3:53262048-53262265(-)$1	217	175	195	11.4394
dddddd[annnnna]dddd]	chr1:8922863-8923104(-)$1	241	118	138	10.6488
eeeee[bbnnnnnbbeeeee	chr19:3976638-3976845(-)$1	207	147	167	11.6192
eeeeecccnnnnnccc]eee	chr6:33240382-33240600(+)$1	218	107	127	11.9261
dd!!ddddnnnnndddd]dd	chr10:71154617-71154892(+)$1	275	144	164	11.1526
:eeeeebbnnnnnbb22eee	chr19:2444301-2444512(-)$1	211	22	42	10.4977
dddd[cccnnnnnccc]ddd	chr19:5690508-5690711(+)$1	203	34	54	11.2856
c[aeeeeennnnneeeee]a	chr16:88709657-88709902(-)$1	245	177	197	11.5979
eee"""bbnnnnnbb]eeee	chr17:33463919-33464173(-)$1	254	10	30	11.4884
eeee[cccnnnnnccc]eee	chr1:113243884-113244129(-)$1	245	206	226	12.0051
""ffffffnnnnnffffffh	chr19:6361777-6362039(+)$1	262	57	77	10.2024
gggggg[annnnna]ggggg	chr20:62152977-62153228(+)$1	251	222	242	11.4058
dgggggggnnnnnggggggg	chr16:29817952-29818199(+)$1	247	201	221	11.3788
========nnnnn=======	chr13:92000700-92000956(+)$1	256	147	167	11.7110
eee[ddddnnnnnddddeee	chr13:45915076-45915301(-)$1	225	112	132	11.3280
d[ccc!!annnnna22cccd	chrX:53588974-53589222(-)$1	248	206	226	10.8427
a[ffffffnnnnnffffffa	chr19:3980805-3981027(-)$1	222	146	166	10.4124
d[ccc[bbnnnnnbb]ccc]	chr8:146017299-146017522(-)$1	223	67	87	11.2303
[bb[ddddnnnnndddd]bb	chr16:88565860-88566141(+)$1	281	115	135	10.2320
fffffcccnnnnnccc333f	chr3:184046324-184046595(+)$1	271	206	226	11.2123
eeeee[bbnnnnnbbeeeee	chr6:30688212-30688439(+)$1	227	106	126	11.6192
c[a!!cccnnnnnccc22a]	chr6:33240319-33240552(+)$1	233	106	126	11.6127
eeee[cccnnnnnccc]eee	chrX:153587352-153587577(-)$1	225	96	116	12.0051
"""eeeeennnnneeeee]e	chr2:232575430-232575675(+)$1	245	12	32	11.5603
###eeeeennnnneeeee]d	chr19:49514351-49514653(+)$1	302	112	132	11.4034
ccc[ddddnnnnnddddccc	chr6:30691976-30692207(+)$1	231	121	141	11.1447
d"""ddddnnnnnddddddd	chr3:53261972-53262248(-)$1	276	47	67	11.0157
FFddddbbnnnnnbb]dddd	chr16:69788464-69788713(-)$1	249	8	28	9.9598
ggaeeeeennnnneeeee]a	chr1:22172557-22172777(-)$1	220	61	81	11.4644
b!!eeeeennnnneeeee22	chr2:10560046-10560294(+)$1	248	172	192	11.1497
####ddddnnnnnddddddd	chr17:42930786-42931083(-)$1	297	269	289	10.9020
eee[ddddnnnnndddd]ee	chr3:45266634-45266965(-)$1	331	80	100	11.2746
fffff[bbnnnnnbb]ffff	chr19:49952695-49952980(-)$1	285	212	232	10.6139
ffffff[annnnna]fffff	chr12:53427489-53427721(+)$1	232	59	79	10.2560
fccc[cccnnnnnccc]ccc	chr22:38690115-38690352(-)$1	237	201	221	11.5674
!gggggggnnnnnggggggg	chr17:56080699-56080962(-)$1	263	144	164	11.4597
eeeee!!annnnna22eeee	chr19:52719191-52719428(+)$1	237	174	194	11.3081
cc!!ddddnnnnndddd]cc	chr1:120277828-120278120(+)$1	292	255	275	11.3819
d[ffffffnnnnnffffffd	chr19:34884849-34885071(+)$1	222	107	127	10.3159
dddd[cccnnnnncccdddd	chr19:38797983-38798206(-)$1	223	94	114	11.1489
bb[eeeeennnnneeeee]b	chr8:146016561-146016768(-)$1	207	50	70	10.9294
b!!bb[bbnnnnnbb]bb22	chr22:38695916-38696172(-)$1	256	109	129	9.7506
ddd"""bbnnnnnbbdddd2	chr16:21987401-21987661(+)$1	260	156	176	10.6865
iiii!!bbnnnnnbb]iiii	chr7:5643528-5643761(+)$1	233	81	101	11.5922
ccbbddddnnnnndddd22b	chr9:35716298-35716591(-)$1	293	199	219	10.0193
:gggggggnnnnnggggggg	chr2:157197790-157198066(-)$1	276	35	55	10.6455
:bb!!cccnnnnnccc333b	chr17:78306260-78306503(+)$1	243	40	60	10.5561
[ccc!!bbnnnnnbb22ccc	chr17:79890276-79890547(-)$1	271	46	66	11.1337
eeee[cccnnnnnccc]eee	chr7:100417185-100417440(-)$1	255	69	89	12.0051
eeeeecccnnnnnccc]eee	chr6:33240352-33240582(+)$1	230	137	157	11.9261
:gggggggnnnnnggggggg	chr7:120694383-120694689(+)$1	306	3	23	10.6455
dddeeeeennnnneeeee22	chr6:27806600-27806869(+)$1	269	144	164	10.8203

#otherMatches

#Seq PSSM
UUCUGGCGGACCGUGCGAGG	chr19:49993690-49993912(+)$1	222	124	144	11.7137
UGGCAGGUGAUGGGCCUGCC	chr16:2012638-2012866(-)$1	228	139	159	11.4180
GAAGGGGCAGACGGCAAUCC	chr16:89036894-89037144(-)$1	250	136	156	10.1569
AGAGCCUCAGCUGGAGGCCC	chrX:153594330-153594541(-)$1	211	10	30	10.7894
AGAGCCUCAGCUGGAGGCCC	chrX:153594420-153594649(-)$1	229	118	138	10.7894
GAAGGAGGGGAAGCCUUAUC	chr13:46726862-46727133(-)$1	271	127	147	10.4498
GCCGAACUGCUGAAGAAAGG	chr3:53262048-53262265(-)$1	217	175	195	11.4394
UGCCGAUCUGAGCGCUUGGC	chr1:8922863-8923104(-)$1	241	118	138	10.6488
CAGUGUGUGUUUGACCACUG	chr19:3976638-3976845(-)$1	207	147	167	11.6192
UCACUGCCAUUAAGGUAAGU	chr6:33240382-33240600(+)$1	218	107	127	11.9261
UCGACUUCACCAAGAAGGGA	chr10:71154617-71154892(+)$1	275	144	164	11.1526
AGAGUCCUGGAUGAGACGGC	chr19:2444301-2444512(-)$1	211	22	42	10.4977
GUGGGCCUCAACAAGGGCCA	chr19:5690508-5690711(+)$1	203	34	54	11.2856
CACCUGCAAUAAAUGCAGCG	chr16:88709657-88709902(-)$1	245	177	197	11.5979
CGGAUCUGGGACACAACUGC	chr17:33463919-33464173(-)$1	254	10	30	11.4884
GACCUUCCCCAAAGGAUGGU	chr1:113243884-113244129(-)$1	245	206	226	12.0051
UCGGCUGGCUGCCCCGGCCC	chr19:6361777-6362039(+)$1	262	57	77	10.2024
UCCAGCACAGCCAGCGCUGG	chr20:62152977-62153228(+)$1	251	222	242	11.4058
CGGGGCUGAGCUCCAGUCCC	chr16:29817952-29818199(+)$1	247	201	221	11.3788
CGUGGGCUUUGUUAGCCCGC	chr13:92000700-92000956(+)$1	256	147	167	11.7110
GACCUCAUCAGCCGUGAGUC	chr13:45915076-45915301(-)$1	225	112	132	11.3280
AGCUGCAGAAAACCAACAGU	chrX:53588974-53589222(-)$1	248	206	226	10.8427
GAGCUCCUGUACGAGGGGCC	chr19:3980805-3981027(-)$1	222	146	166	10.4124
GAAGCACCGUAAAGGCGCUG	chr8:146017299-146017522(-)$1	223	67	87	11.2303
GACACGGAGCAGGUCUGCGU	chr16:88565860-88566141(+)$1	281	115	135	10.2320
GGGGAGCUGUUCAGGUAAGU	chr3:184046324-184046595(+)$1	271	206	226	11.2123
UGGCAACCAGAUCGGUGCCA	chr6:30688212-30688439(+)$1	227	106	126	11.6192
UUCCAGCAUAUUUUGCGAGU	chr6:33240319-33240552(+)$1	233	106	126	11.6127
UCCAAGGUCAAGUGCUCUGG	chrX:153587352-153587577(-)$1	225	96	116	12.0051
CAGGCCCCGGCCUGGGGCAC	chr2:232575430-232575675(+)$1	245	12	32	11.5603
GAGGUCCACAUGCUGGACAU	chr19:49514351-49514653(+)$1	302	112	132	11.4034
CUGAGUAUCAGCAGUACCAG	chr6:30691976-30692207(+)$1	231	121	141	11.1447
GCCCUGAGCCUUACUCACCC	chr3:53261972-53262248(-)$1	276	47	67	11.0157
CCCUCCCGGAGUGCGUGGAG	chr16:69788464-69788713(-)$1	249	8	28	9.9598
GUCCCCGGCCGACUCGGGUG	chr1:22172557-22172777(-)$1	220	61	81	11.4644
CAACGGCUACAUCAGCCGCA	chr2:10560046-10560294(+)$1	248	172	192	11.1497
CUAUAGGCCCCCAGCCUUCC	chr17:42930786-42931083(-)$1	297	269	289	10.9020
GCUGGCGGCUGAACCGUAAG	chr3:45266634-45266965(-)$1	331	80	100	11.2746
AUGAGUCUGGGAGAGCCUCA	chr19:49952695-49952980(-)$1	285	212	232	10.6139
GGUGAUUGGAAAACUAUUAC	chr12:53427489-53427721(+)$1	232	59	79	10.2560
UGGGCGGCAAGAGGUCUCCC	chr22:38690115-38690352(-)$1	237	201	221	11.5674
CUAACUGGGUCUAUCAGUUA	chr17:56080699-56080962(-)$1	263	144	164	11.4597
AGCCUGCCAAAAAGAGGGGC	chr19:52719191-52719428(+)$1	237	174	194	11.3081
UCAGCGUCAGGAGGACGGGA	chr1:120277828-120278120(+)$1	292	255	275	11.3819
GCGUACUUCCAGCAGGUACC	chr19:34884849-34885071(+)$1	222	107	127	10.3159
UACCUGGUGCUGGGCUGGUG	chr19:38797983-38798206(-)$1	223	94	114	11.1489
UGAAGCUGCCCUCCGGCUCC	chr8:146016561-146016768(-)$1	207	50	70	10.9294
CCGUCGAGAUGACCUGGAGA	chr22:38695916-38696172(-)$1	256	109	129	9.7506
CUGCCAAGUAAGUCUCAGUA	chr16:21987401-21987661(+)$1	260	156	176	10.6865
AGCUAUGACGUCUUCCAGCU	chr7:5643528-5643761(+)$1	233	81	101	11.5922
GCCAAGGUACAAAGCCUUCU	chr9:35716298-35716591(-)$1	293	199	219	10.0193
AAUUGCAAUCGAUUUGUAAU	chr2:157197790-157198066(-)$1	276	35	55	10.6455
ACCGAGUCGAACAGAUCAAG	chr17:78306260-78306503(+)$1	243	40	60	10.5561
UCCUGACCUCCCUGGGAGGG	chr17:79890276-79890547(-)$1	271	46	66	11.1337
UCCUGUGCGCCCUGCGGGGG	chr7:100417185-100417440(-)$1	255	69	89	12.0051
UCACUGCCAUUAAGGUAAGU	chr6:33240352-33240582(+)$1	230	137	157	11.9261
cuuucucagacagugagaaa	chr7:120694383-120694689(+)$1	306	3	23	10.6455
GCUGCCAGGGGAGCUGGCCA	chr6:27806600-27806869(+)$1	269	144	164	10.8203

#DB
.(((.(((.....))).)))	chr19:49993690-49993912(+)$1	1	124	144	11.7137
)(((((((.....)))))))	chr16:2012638-2012866(-)$1	1	139	159	11.4180
((((((((.....))...))	chr16:89036894-89037144(-)$1	1	136	156	10.1569
.(.(((((.....))))).)	chrX:153594330-153594541(-)$1	1	10	30	10.7894
.(.(((((.....))))).)	chrX:153594420-153594649(-)$1	1	118	138	10.7894
((..((((.....)))).))	chr13:46726862-46727133(-)$1	1	127	147	10.4498
(((...((.....))...))	chr3:53262048-53262265(-)$1	1	175	195	11.4394
((((((.(.....).)))).	chr1:8922863-8923104(-)$1	1	118	138	10.6488
(((((.((.....)))))))	chr19:3976638-3976845(-)$1	1	147	167	11.6192
((((((((.....))).)))	chr6:33240382-33240600(+)$1	1	107	127	11.9261
((..((((.....)))).))	chr10:71154617-71154892(+)$1	1	144	164	11.1526
.(((((((.....))..)))	chr19:2444301-2444512(-)$1	1	22	42	10.4977
((((.(((.....))).)))	chr19:5690508-5690711(+)$1	1	34	54	11.2856
(.((((((.....))))).)	chr16:88709657-88709902(-)$1	1	177	197	11.5979
(((...((.....)).))))	chr17:33463919-33464173(-)$1	1	10	30	11.4884
((((.(((.....))).)))	chr1:113243884-113244129(-)$1	1	206	226	12.0051
..((((((.....)))))))	chr19:6361777-6362039(+)$1	1	57	77	10.2024
((((((.(.....).)))))	chr20:62152977-62153228(+)$1	1	222	242	11.4058
)(((((((.....)))))))	chr16:29817952-29818199(+)$1	1	201	221	11.3788
((((((((.....)))))))	chr13:92000700-92000956(+)$1	1	147	167	11.7110
(((.((((.....)))))))	chr13:45915076-45915301(-)$1	1	112	132	11.3280
(.(((..(.....)..))))	chrX:53588974-53589222(-)$1	1	206	226	10.8427
(.((((((.....)))))))	chr19:3980805-3981027(-)$1	1	146	166	10.4124
(.(((.((.....)).))).	chr8:146017299-146017522(-)$1	1	67	87	11.2303
.((.((((.....)))).))	chr16:88565860-88566141(+)$1	1	115	135	10.2320
((((((((.....)))...)	chr3:184046324-184046595(+)$1	1	206	226	11.2123
(((((.((.....)))))))	chr6:30688212-30688439(+)$1	1	106	126	11.6192
(.(..(((.....)))..).	chr6:33240319-33240552(+)$1	1	106	126	11.6127
((((.(((.....))).)))	chrX:153587352-153587577(-)$1	1	96	116	12.0051
...(((((.....))))).)	chr2:232575430-232575675(+)$1	1	12	32	11.5603
...(((((.....))))).)	chr19:49514351-49514653(+)$1	1	112	132	11.4034
(((.((((.....)))))))	chr6:30691976-30692207(+)$1	1	121	141	11.1447
(...((((.....)))))))	chr3:53261972-53262248(-)$1	1	47	67	11.0157
((((((((.....)).))))	chr16:69788464-69788713(-)$1	1	8	28	9.9598
((((((((.....))))).)	chr1:22172557-22172777(-)$1	1	61	81	11.4644
(..(((((.....)))))..	chr2:10560046-10560294(+)$1	1	172	192	11.1497
....((((.....)))))))	chr17:42930786-42931083(-)$1	1	269	289	10.9020
(((.((((.....)))).))	chr3:45266634-45266965(-)$1	1	80	100	11.2746
(((((.((.....)).))))	chr19:49952695-49952980(-)$1	1	212	232	10.6139
((((((.(.....).)))))	chr12:53427489-53427721(+)$1	1	59	79	10.2560
)(((.(((.....))).)))	chr22:38690115-38690352(-)$1	1	201	221	11.5674
.(((((((.....)))))))	chr17:56080699-56080962(-)$1	1	144	164	11.4597
(((((..(.....)..))))	chr19:52719191-52719428(+)$1	1	174	194	11.3081
((..((((.....)))).))	chr1:120277828-120278120(+)$1	1	255	275	11.3819
(.((((((.....)))))))	chr19:34884849-34885071(+)$1	1	107	127	10.3159
((((.(((.....)))))))	chr19:38797983-38798206(-)$1	1	94	114	11.1489
((.(((((.....))))).)	chr8:146016561-146016768(-)$1	1	50	70	10.9294
(..((.((.....)).))..	chr22:38695916-38696172(-)$1	1	109	129	9.7506
(((...((.....)))))).	chr16:21987401-21987661(+)$1	1	156	176	10.6865
((((..((.....)).))))	chr7:5643528-5643761(+)$1	1	81	101	11.5922
((((((((.....))))..)	chr9:35716298-35716591(-)$1	1	199	219	10.0193
.(((((((.....)))))))	chr2:157197790-157198066(-)$1	1	35	55	10.6455
.((..(((.....)))...)	chr17:78306260-78306503(+)$1	1	40	60	10.5561
.(((..((.....))..)))	chr17:79890276-79890547(-)$1	1	46	66	11.1337
((((.(((.....))).)))	chr7:100417185-100417440(-)$1	1	69	89	12.0051
((((((((.....))).)))	chr6:33240352-33240582(+)$1	1	137	157	11.9261
.(((((((.....)))))))	chr7:120694383-120694689(+)$1	1	3	23	10.6455
((((((((.....)))))..	chr6:27806600-27806869(+)$1	1	144	164	10.8203

#PSSM
d : 0.18	e : 0.18	c : 0.12	: : 0.10	b : 0.06	f : 0.06	[ : 0.05	" : 0.03	g : 0.03	# : 0.03	h : 0.01	= : 0.01	a : 0.01	F : 0.01	! : 0.01	i : 0.01	
e : 0.20	c : 0.12	g : 0.12	d : 0.10	[ : 0.10	b : 0.06	" : 0.05	f : 0.05	a : 0.03	# : 0.03	! : 0.03	h : 0.01	= : 0.01	F : 0.01	i : 0.01	
e : 0.20	c : 0.12	g : 0.10	d : 0.10	f : 0.10	! : 0.08	[ : 0.05	a : 0.05	b : 0.05	" : 0.03	# : 0.03	h : 0.01	= : 0.01	i : 0.01	
e : 0.31	g : 0.10	f : 0.10	c : 0.08	! : 0.08	" : 0.06	d : 0.06	[ : 0.06	b : 0.03	h : 0.01	= : 0.01	# : 0.01	i : 0.01	
e : 0.25	d : 0.20	[ : 0.12	g : 0.10	f : 0.10	! : 0.06	" : 0.05	c : 0.03	h : 0.01	= : 0.01	b : 0.01	
c : 0.20	d : 0.20	e : 0.17	g : 0.10	[ : 0.08	f : 0.06	! : 0.06	" : 0.05	h : 0.01	= : 0.01	
b : 0.22	c : 0.20	d : 0.17	e : 0.15	g : 0.08	[ : 0.05	f : 0.05	! : 0.03	= : 0.01	
b : 0.22	c : 0.20	d : 0.17	e : 0.15	g : 0.08	a : 0.08	f : 0.05	= : 0.01	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
b : 0.22	c : 0.20	d : 0.17	e : 0.15	g : 0.08	a : 0.08	f : 0.05	= : 0.01	
b : 0.22	c : 0.20	d : 0.17	e : 0.15	g : 0.08	] : 0.05	f : 0.05	2 : 0.03	= : 0.01	
c : 0.20	d : 0.20	e : 0.18	g : 0.10	] : 0.10	2 : 0.06	f : 0.06	3 : 0.03	= : 0.01	
d : 0.24	e : 0.22	] : 0.13	g : 0.10	f : 0.08	3 : 0.06	2 : 0.05	c : 0.03	= : 0.01	b : 0.01	i : 0.01	
e : 0.34	d : 0.12	c : 0.10	g : 0.10	] : 0.08	f : 0.08	3 : 0.06	2 : 0.03	= : 0.01	b : 0.01	i : 0.01	
e : 0.20	c : 0.13	d : 0.13	] : 0.12	g : 0.10	f : 0.08	2 : 0.06	b : 0.03	3 : 0.03	h : 0.01	= : 0.01	a : 0.01	i : 0.01	
e : 0.22	d : 0.15	c : 0.10	g : 0.10	a : 0.08	b : 0.08	2 : 0.06	] : 0.05	f : 0.05	h : 0.03	= : 0.01	i : 0.01	

#score	642.8104393552811
#seq	58
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_UTR_m1_run2.txt

#BEAR
""bb!!ccc!!a!!cccmmmmccc]a22ccc22bb333bb	chr7:94285295-94285558(-)$1	263	104	144	13.4973
accc!!ccc!!ccc[bbnnnnnbbccc22cccccc]a]cc	chr5:126365970-126366345(-)$1	375	217	257	16.4782
ggggggg"""a[a"""ccclllccc333a]a22ggggggg	chr16:15736764-15737034(-)$1	270	131	171	15.9038
===========!!ddddoooooodddd55555========	chr2:233568033-233568300(+)$1	267	189	229	14.1768
[dddd"""iiiiiiiiinnnnniiiiiiiiidddd]a]cc	chr10:51827608-51827872(+)$1	264	22	62	15.9118
ccc!!bb!!ccc[ddddoooooodddd]ccc22bb22ccc	chr22:19109742-19110020(-)$1	278	190	230	14.0437
d!!iiiiiiiii[bb[bboooooobb22bb]iiiiiiiii	chr12:54121085-54121330(-)$1	245	88	128	13.6703
ccaccc!!iiiiiiiiinnnnniiiiiiiii22ccc]a]c	chr14:68162300-68162578(-)$1	278	109	149	16.8591
====="""==========mmmm==========]=======	chr17:56591781-56592056(-)$1	275	54	94	16.5603
a[ccc"""ccc[a[cccnnnnnccc]a]cccccc]a]ccc	chr14:103388895-103389196(+)$1	301	169	209	17.4307
::===============nnnnn===============:bb	chr19:48972497-48972818(+)$1	321	118	158	15.3418
hdddd!!bb####ddddnnnnndddd333bb22dddd===	chr2:220462490-220462748(+)$1	258	146	186	17.1740
eeeee!!cccbb[acccnnnnnccc]a]bb]ccc22eeee	chr7:92076693-92076982(+)$1	289	99	139	15.2060
!!ccc!!==========nnnnn==========22ccc22a	chr16:75018827-75019090(-)$1	263	13	53	17.5198
ccc[a[ccc[ccc[ddddllldddd22ccc]ccc]a]ccc	chr8:42751996-42752306(+)$1	310	164	204	13.7570
=====[ccc[a!!ddddnnnnndddd22accc========	chr4:76649746-76650047(+)$1	301	95	135	19.6527
===========[a!!ddddllldddd22a]==========	chr2:62423223-62423508(+)$1	285	7	47	16.8087
iiii!!bb[ccc[bb[aooooooa]bb]ccc]bb]iiiii	chr1:169862835-169863161(-)$1	326	230	270	14.3068
!ccc[ggggggg[a[bbnnnnnbba]ggggggg]ccc444	chr10:93392652-93392904(-)$1	252	11	51	15.4648
iiiiiiii"""bb[cccnnnnnccc]bb333iiiiiiiii	chr1:6845467-6845736(+)$1	269	187	227	18.4128
fff[ccc[a[bb!!cccnnnnnccc333bb]a]cccffff	chr2:28615625-28615893(+)$1	268	55	95	16.8069
dddd[ccc####eeeeeooooooeeeee4444ccc]dddd	chr17:46048359-46048599(+)$1	240	74	114	13.5151
""ggggggg"""eeeeemmmmeeeee333gggggggffff	chr12:6797860-6798193(-)$1	333	223	263	13.2310
[eeeee[ccc!!ccc[annnnna]ccc]ccc333eeeeed	chr20:62496557-62496793(+)$1	236	105	145	16.4104
fffffccc"""ffffffnnnnnffffff4444ccc]ffff	chr12:1920762-1921019(-)$1	257	138	178	14.7106
============[ddddnnnnndddd333===========	chr2:27309547-27309820(+)$1	273	165	205	20.4554
iiiiii[a[ccc[a[bbnnnnnbb]a]ccc]aiiiiiiii	chr2:20550257-20550507(-)$1	250	194	234	17.5622
ggggg[===========lll===========]gggggggg	chr16:431715-432007(-)$1	292	222	262	15.8639
[eeeee[ccc!!ccc[annnnna]ccc]ccc333eeeeed	chr20:62496598-62496841(+)$1	243	64	104	16.4104
iiiii[a[a"""ccc[cccmmmmccc]ccc333a]aiiii	chr19:47987242-47987567(-)$1	325	98	138	15.1559
fffffggggggg[bb[annnnna]bb]ggggggg4444ff	chr18:2960655-2960949(-)$1	294	201	241	14.6106
bbccc[ggggggg!!bbnnnnnbb]ggggggg]ccc22bb	chr1:92351581-92351809(-)$1	228	128	168	14.2183
=========="""cccooooooccc333===========:	chr10:114206515-114206771(-)$1	256	24	64	17.8773
g[dddd[bb[bb!!cccnnnnnccc]bb]bb333dddd]g	chr7:22396570-22396856(-)$1	286	152	192	15.0005
gggg!!a[ffffff[bbnnnnnbb]ffffffa22gggggg	chr17:56084452-56084703(-)$1	251	136	176	14.1579
iiiii[ccc[ccc[ddddmmmmdddd]ccc]ccc]iiiii	chr2:191513920-191514188(+)$1	268	223	263	14.4825
=====[a%%%%%%ddddoooooodddd333a]========	chr2:88355041-88355349(-)$1	308	191	231	14.7418
=========####ccc[allla]ccc22==========]a	chr11:17229337-17229608(-)$1	271	176	216	17.9874
ggggg!!bb!!bb[ddddmmmmdddd]bbbb22ggggggg	chr11:65667623-65667975(-)$1	352	2	42	13.0090
fff[bb!!ccc!!a[bbnnnnnbb]a]cccbb]ffffff]	chr5:138611708-138611939(+)$1	231	88	128	14.3491
eeee!!ccc"""ddddoooooodddd22ccc]eeeee444	chr11:43702241-43702508(+)$1	267	22	62	15.0617
ddd!!eeeee####a[annnnna]a4444eeeee22dddd	chr16:20911424-20911760(-)$1	336	134	174	13.6349
=======!!hhhhhhhhnnnnnhhhhhhhh]=========	chr19:58790250-58790601(+)$1	351	125	165	15.5953
======[bb"""bb[ddddlllddddbbbb]=========	chr5:137688331-137688654(+)$1	323	273	313	15.0832
===[ccc"""ddddcccnnnnnccc]ddddccc=======	chr8:48873400-48873681(+)$1	281	95	135	16.9039
gggggbb"""bbeeeeennnnneeeee]bb333bb]gggg	chr12:15942151-15942428(-)$1	277	130	170	15.7997
#ccc[ccc"""ffffffnnnnnffffff22ccc]ccc]ff	chrX:48900626-48900957(-)$1	331	282	322	14.7323
!!dddd"""bb!!ddddnnnnndddd]bb333dddd22cc	chr1:161719481-161719779(+)$1	298	3	43	15.9719
a[ggggggg"""eeeeennnnneeeee333ggggggg]a3	chr1:24969682-24969942(+)$1	260	14	54	17.3305
ff[dddd[bbcccddddnnnnndddd]ccc22bbddddff	chr19:45542208-45542468(+)$1	260	170	210	13.8146
FFFFFFccc"""ddddoooooodddd]ccc==========	chr1:43232860-43233175(+)$1	315	45	85	13.8606
a[a[a[a[a!!ffffffnnnnnffffff22a]a]a]a]a2	chr2:118845952-118846220(+)$1	268	158	198	15.0044
eee[ccc[ccc!!ddddooooooddddccc]ccc333eee	chr14:74769478-74769744(-)$1	266	211	251	14.6352
a[ddddbb####ddddoooooodddd22bb22dddd]a]b	chr17:29151440-29151805(-)$1	365	294	334	13.7880

#otherMatches

#Seq PSSM
AGGGGAGGGGAGAAUCGAGGACGGACGGCCUAGCCAGGCC	chr7:94285295-94285558(-)$1	263	104	144	13.4973
GGCCGUGAGCAGCCACCGACUGGGGGCAACUUGGCACUUA	chr5:126365970-126366345(-)$1	375	217	257	16.4782
ugugagcggagguggagccggcggcagaggugagUUUGCA	chr16:15736764-15737034(-)$1	270	131	171	15.9038
AGCCUGAGGGCUUUUGCAAAUAGGUAAUUUCUGCUUUUAG	chr2:233568033-233568300(+)$1	267	189	229	14.1768
GGGUUCUGUCACGUGACAUCAGGUCACGUGAGGCCGGUCA	chr10:51827608-51827872(+)$1	264	22	62	15.9118
GCCUCGCCCAGGUUCAGCUCCGCCUGACCCUCCGCUUGGC	chr22:19109742-19110020(-)$1	278	190	230	14.0437
AGUGCUGUUUUUGUUGUUGGUGAAAGGUGAGGGGAACAGC	chr12:54121085-54121330(-)$1	245	88	128	13.6703
GCGAGCAACGCUGGAGCAUCCCGCUCUGGUGCCGCUGCAG	chr14:68162300-68162578(-)$1	278	109	149	16.8591
GCUCCCCUCCCUUCUGCACUCGUGCGGGAGGGCGGAGCUG	chr17:56591781-56592056(-)$1	275	54	94	16.5603
UGCGGUGAGCCGGGACCACACCGGUGCGGGCCCGGACGGU	chr14:103388895-103389196(+)$1	301	169	209	17.4307
GAGUCUUUUCAGCGCUGAGGACUGGCGCUGAGGAGGCGGC	chr19:48972497-48972818(+)$1	321	118	158	15.3418
GGAGGUUCGGUAUGUCUGACCAGGACUUAUGUUCCUCGAA	chr2:220462490-220462748(+)$1	258	146	186	17.1740
UCCCUUUCCCAGUCCUGCUUCCCAGUGCCUCGGGCCAGGG	chr7:92076693-92076982(+)$1	289	99	139	15.2060
AGCCUAUGCUUGGGUCAACCAAUGGCUUGAGCUCAGGAGC	chr16:75018827-75019090(-)$1	263	13	53	17.5198
CCGAGGAGCAGGCGGGCCUGAGGCCGAGUCAGCUGCGCGG	chr8:42751996-42752306(+)$1	310	164	204	13.7570
UCCGGGCUUAGAGGGCUGGAGUGGCCGCCGAGUUGGAGGC	chr4:76649746-76650047(+)$1	301	95	135	19.6527
CUGCUGCGCCUGGAACCGGAGCCUGGAGUGAGGCGCAGCG	chr2:62423223-62423508(+)$1	285	7	47	16.8087
CAGGUAACAGGGAGCCCUGCGCUGCGCCCCCAGUCCUUGC	chr1:169862835-169863161(-)$1	326	230	270	14.3068
AUUGGUCCCAGGGAUCGGGUCACGUGCUUGGGAGCAGAUA	chr10:93392652-93392904(-)$1	252	11	51	15.4648
GGGCUggggggcggcgcggcgggcggcgggacccggcccc	chr1:6845467-6845736(+)$1	269	187	227	18.4128
UACAGGGCUGGAGAAUAAAGAGUGUGAGUUGAACUCGUGC	chr2:28615625-28615893(+)$1	268	55	95	16.8069
GCUCGGCCACAACGCCACUGGAUUGGUGGUAGGGCGGGGC	chr17:46048359-46048599(+)$1	240	74	114	13.5151
AACUGUCUCAGGGGAGCGAAGGUUUUGAGGGGACAGCUGG	chr12:6797860-6798193(-)$1	333	223	263	13.2310
CGCCGCCCGCUCGGCUCCCAUAGCGCCCGCGACAGCGGUC	chr20:62496557-62496793(+)$1	236	105	145	16.4104
GUCCAAAUGAAGCUGGAAUUCCUCCAGCGCAAAUUCUGGG	chr12:1920762-1921019(-)$1	257	138	178	14.7106
GAGAGUGCGGGGCAAGUAGCGCAUUUUCUCUUUGCAUUCU	chr2:27309547-27309820(+)$1	273	165	205	20.4554
UCGAGGAUGGCUCCCCAGGCUUUGUGCGGCGGCCUCGGCG	chr2:20550257-20550507(-)$1	250	194	234	17.5622
guggccgcggugguggcggggccgCUGCUGCUGCUGCUGC	chr16:431715-432007(-)$1	292	222	262	15.8639
CGCCGCCCGCUCGGCUCCCAUAGCGCCCGCGACAGCGGUC	chr20:62496598-62496841(+)$1	243	64	104	16.4104
GGGUAGUGCGGGUUGGGGCGGGGGCUGCGGAGAGGGUGCU	chr19:47987242-47987567(-)$1	325	98	138	15.1559
AUUGAUGUCAUCGUGGUACAGCAGCAGGAUGGCAGCUAUC	chr18:2960655-2960949(-)$1	294	201	241	14.6106
GCACUUUCCUCUUCCCAGCGAGUGAAGGAGGGCAGUCGGC	chr1:92351581-92351809(-)$1	228	128	168	14.2183
CUUCCGGAGGGAGGUUUGAGGCGGCGAACCUCCGGAAGUG	chr10:114206515-114206771(-)$1	256	24	64	17.8773
CCCGGCGCCGCAGCGCCGUCAGGGCAUGAGGAUGGCCGUG	chr7:22396570-22396856(-)$1	286	152	192	15.0005
GGCUCGCUCUGCCGUGCGCUAGGCUUGGUGGGAAGGCCUG	chr17:56084452-56084703(-)$1	251	136	176	14.1579
CGGCUGAGCGGCCACGGGCGAACUUGGGGCGGCUGAGUCG	chr2:191513920-191514188(+)$1	268	223	263	14.4825
CUGCCUCAGAGAAGGUGAGUUcccgccccggcggcggggg	chr2:88355041-88355349(-)$1	308	191	231	14.7418
UCAGGUUGUGGUAGAGGCGGAGGCUCAGGCAGCUUGAGGU	chr11:17229337-17229608(-)$1	271	176	216	17.9874
GGGUGGAGCCUGGAGGUGACCGCGCCGCUGCAACGCCCCC	chr11:65667623-65667975(-)$1	352	2	42	13.0090
UGUUUCAUUGCAGAGAGGCUGGCUGUGGCAGAUGCAACUG	chr5:138611708-138611939(+)$1	231	88	128	14.3491
GGUGUCGGAGCAGCGCCUAUUAGUGUCAUCCUCACCGUCA	chr11:43702241-43702508(+)$1	267	22	62	15.0617
AGGGAGCCUGGAAACGCGAGCGGGGAUGGUAGGUGGUUUG	chr16:20911424-20911760(-)$1	336	134	174	13.6349
GGUCCCUUUGGCUGGAGUGCCUCUCUGGUCUGGGGAUCAC	chr19:58790250-58790601(+)$1	351	125	165	15.5953
GCGCUGCGCACUCGAGCCUGGCGGGCCGGCACGGUGCGGG	chr5:137688331-137688654(+)$1	323	273	313	15.0832
GUCUCGCGGUUUGGGAGCGCUACUCGCCAGGUGGACUCGG	chr8:48873400-48873681(+)$1	281	95	135	16.9039
AGGCGGUCUCGCCCGGCGCGAGGCCGGCGCUGUGCUCGCC	chr12:15942151-15942428(-)$1	277	130	170	15.7997
GGAGGAGCGCAGGCCGGCCGACUCGGCUCAGCUGCUCAGG	chrX:48900626-48900957(-)$1	331	282	322	14.7323
GAGGGAGCAGCAGAGCCGCCGAGGCUGGCGAGUCCCAGGG	chr1:161719481-161719779(+)$1	298	3	43	15.9719
GGCGGGCGCAACGACGCGCGCUGCGUCCCGGCGCUCGGCU	chr1:24969682-24969942(+)$1	260	14	54	17.3305
UGCGGCUCGACCUCCCGGUUUUCGGGCAGGCCUCAGCCCA	chr19:45542208-45542468(+)$1	260	170	210	13.8146
AGCUCCGCCCACGCGCCUUUAUGCGCAGGCUCUUCCUACU	chr1:43232860-43233175(+)$1	315	45	85	13.8606
GGCGGGGGUGAGUUGGGGGUCUCCCGGCGAAGCGCGGGUG	chr2:118845952-118846220(+)$1	268	158	198	15.0044
GGCUGUAGGGAAUGGGCUUUCCUGCCCUCCGUGCCUCGUC	chr14:74769478-74769744(-)$1	266	211	251	14.6352
UGGGCCCGGGGGUGGCGCGGAUGCCGGGCGAAGGCUGGGA	chr17:29151440-29151805(-)$1	365	294	334	13.7880

#DB
..((..(((..(..(((....))).)..)))..))...))	chr7:94285295-94285558(-)$1	1	104	144	13.4973
((((..(((..(((.((.....)))))..)))))).).))	chr5:126365970-126366345(-)$1	1	217	257	16.4782
(((((((...(.(...(((...)))...).)..)))))))	chr16:15736764-15737034(-)$1	1	131	171	15.9038
(((((((((((..((((......)))).....))))))))	chr2:233568033-233568300(+)$1	1	189	229	14.1768
.((((...(((((((((.....))))))))))))).).))	chr10:51827608-51827872(+)$1	1	22	62	15.9118
(((..((..(((.((((......)))).)))..))..)))	chr22:19109742-19110020(-)$1	1	190	230	14.0437
(..(((((((((.((.((......))..)).)))))))))	chr12:54121085-54121330(-)$1	1	88	128	13.6703
((((((..(((((((((.....)))))))))..))).).)	chr14:68162300-68162578(-)$1	1	109	149	16.8591
(((((...((((((((((....)))))))))).)))))))	chr17:56591781-56592056(-)$1	1	54	94	16.5603
(.(((...(((.(.(((.....))).).)))))).).)))	chr14:103388895-103389196(+)$1	1	169	209	17.4307
..(((((((((((((((.....))))))))))))))).((	chr19:48972497-48972818(+)$1	1	118	158	15.3418
)((((..((....((((.....))))...))..))))(((	chr2:220462490-220462748(+)$1	1	146	186	17.1740
(((((..(((((.((((.....))).).)).)))..))))	chr7:92076693-92076982(+)$1	1	99	139	15.2060
..(((..((((((((((.....))))))))))..)))..)	chr16:75018827-75019090(-)$1	1	13	53	17.5198
(((.(.(((.(((.((((...))))..))).))).).)))	chr8:42751996-42752306(+)$1	1	164	204	13.7570
(((((.(((.(..((((.....))))..))))))))))))	chr4:76649746-76650047(+)$1	1	95	135	19.6527
(((((((((((.(..((((...))))..).))))))))))	chr2:62423223-62423508(+)$1	1	7	47	16.8087
((((..((.(((.((.(......).)).))).)).)))))	chr1:169862835-169863161(-)$1	1	230	270	14.3068
.(((.(((((((.(.((.....))).))))))).)))...	chr10:93392652-93392904(-)$1	1	11	51	15.4648
((((((((...((.(((.....))).))...)))))))))	chr1:6845467-6845736(+)$1	1	187	227	18.4128
(((.(((.(.((..(((.....)))...)).).)))))))	chr2:28615625-28615893(+)$1	1	55	95	16.8069
((((.(((....(((((......)))))....))).))))	chr17:46048359-46048599(+)$1	1	74	114	13.5151
..(((((((...(((((....)))))...)))))))))))	chr12:6797860-6798193(-)$1	1	223	263	13.2310
.(((((.(((..(((.(.....).))).)))...))))))	chr20:62496557-62496793(+)$1	1	105	145	16.4104
((((((((...((((((.....))))))....))).))))	chr12:1920762-1921019(-)$1	1	138	178	14.7106
((((((((((((.((((.....))))...)))))))))))	chr2:27309547-27309820(+)$1	1	165	205	20.4554
((((((.(.(((.(.((.....)).).))).)))))))))	chr2:20550257-20550507(-)$1	1	194	234	17.5622
(((((.(((((((((((...))))))))))).))))))))	chr16:431715-432007(-)$1	1	222	262	15.8639
.(((((.(((..(((.(.....).))).)))...))))))	chr20:62496598-62496841(+)$1	1	64	104	16.4104
(((((.(.(...(((.(((....))).)))...).)))))	chr19:47987242-47987567(-)$1	1	98	138	15.1559
((((((((((((.((.(.....).)).)))))))....))	chr18:2960655-2960949(-)$1	1	201	241	14.6106
(((((.(((((((..((.....)).))))))).)))..))	chr1:92351581-92351809(-)$1	1	128	168	14.2183
((((((((((...(((......)))...))))))))))).	chr10:114206515-114206771(-)$1	1	24	64	17.8773
(.((((.((.((..(((.....))).)).))...)))).)	chr7:22396570-22396856(-)$1	1	152	192	15.0005
((((..(.((((((.((.....)).)))))))..))))))	chr17:56084452-56084703(-)$1	1	136	176	14.1579
(((((.(((.(((.((((....)))).))).))).)))))	chr2:191513920-191514188(+)$1	1	223	263	14.4825
(((((.(......((((......))))...).))))))))	chr2:88355041-88355349(-)$1	1	191	231	14.7418
(((((((((....(((.(...).)))..)))))))))).)	chr11:17229337-17229608(-)$1	1	176	216	17.9874
(((((..((..((.((((....)))).))))..)))))))	chr11:65667623-65667975(-)$1	1	2	42	13.0090
(((.((..(((..(.((.....)).).))))).)))))).	chr5:138611708-138611939(+)$1	1	88	128	14.3491
((((..(((...((((......))))..))).)))))...	chr11:43702241-43702508(+)$1	1	22	62	15.0617
(((..(((((....(.(.....).)....)))))..))))	chr16:20911424-20911760(-)$1	1	134	174	13.6349
(((((((..((((((((.....)))))))).)))))))))	chr19:58790250-58790601(+)$1	1	125	165	15.5953
((((((.((...((.((((...)))))))).)))))))))	chr5:137688331-137688654(+)$1	1	273	313	15.0832
(((.(((...(((((((.....))).))))))))))))))	chr8:48873400-48873681(+)$1	1	95	135	16.9039
(((((((...(((((((.....))))).))...)).))))	chr12:15942151-15942428(-)$1	1	130	170	15.7997
.(((.(((...((((((.....))))))..))).))).))	chrX:48900626-48900957(-)$1	1	282	322	14.7323
..((((...((..((((.....)))).))...))))..))	chr1:161719481-161719779(+)$1	1	3	43	15.9719
(.(((((((...(((((.....)))))...))))))).).	chr1:24969682-24969942(+)$1	1	14	54	17.3305
((.((((.(((((((((.....)))).)))..))))))))	chr19:45542208-45542468(+)$1	1	170	210	13.8146
(((((((((...((((......)))).)))((((((((((	chr1:43232860-43233175(+)$1	1	45	85	13.8606
(.(.(.(.(..((((((.....))))))..).).).).).	chr2:118845952-118846220(+)$1	1	158	198	15.0044
(((.(((.(((..((((......))))))).)))...)))	chr14:74769478-74769744(-)$1	1	211	251	14.6352
(.((((((....((((......))))..))..)))).).)	chr17:29151440-29151805(-)$1	1	294	334	13.7880

#PSSM
= : 0.20	g : 0.11	a : 0.09	i : 0.09	f : 0.09	[ : 0.05	c : 0.05	d : 0.05	e : 0.05	! : 0.05	" : 0.03	: : 0.01	h : 0.01	b : 0.01	# : 0.01	F : 0.01	
= : 0.20	c : 0.11	g : 0.09	[ : 0.09	e : 0.09	i : 0.09	f : 0.09	d : 0.07	! : 0.05	" : 0.03	: : 0.01	b : 0.01	F : 0.01	
= : 0.22	c : 0.14	g : 0.12	d : 0.12	e : 0.09	i : 0.09	f : 0.07	a : 0.03	b : 0.01	! : 0.01	[ : 0.01	F : 0.01	
= : 0.20	c : 0.12	g : 0.12	d : 0.12	i : 0.11	[ : 0.11	e : 0.07	! : 0.03	f : 0.03	b : 0.01	F : 0.01	
= : 0.20	! : 0.12	c : 0.12	g : 0.11	d : 0.11	i : 0.09	e : 0.05	[ : 0.05	a : 0.03	f : 0.03	b : 0.01	F : 0.01	
! : 0.16	= : 0.14	[ : 0.14	c : 0.12	g : 0.09	d : 0.07	" : 0.05	b : 0.05	i : 0.05	e : 0.05	F : 0.01	
c : 0.24	= : 0.14	g : 0.11	! : 0.11	[ : 0.09	" : 0.07	b : 0.07	a : 0.07	i : 0.03	e : 0.01	d : 0.01	
c : 0.24	= : 0.14	" : 0.12	b : 0.11	[ : 0.11	g : 0.09	! : 0.07	i : 0.03	a : 0.01	% : 0.01	e : 0.01	
c : 0.24	= : 0.16	" : 0.12	b : 0.09	g : 0.09	i : 0.05	a : 0.05	! : 0.03	[ : 0.03	# : 0.03	f : 0.01	% : 0.01	e : 0.01	
" : 0.22	c : 0.16	= : 0.14	[ : 0.09	! : 0.07	# : 0.07	i : 0.05	g : 0.05	b : 0.03	f : 0.01	% : 0.01	e : 0.01	h : 0.01	
" : 0.18	c : 0.16	= : 0.12	! : 0.11	# : 0.09	b : 0.09	i : 0.05	g : 0.05	a : 0.03	f : 0.01	% : 0.01	h : 0.01	d : 0.01	
c : 0.12	! : 0.12	" : 0.12	b : 0.11	= : 0.09	# : 0.09	f : 0.07	[ : 0.05	i : 0.05	g : 0.05	a : 0.01	% : 0.01	h : 0.01	d : 0.01	
! : 0.14	[ : 0.14	c : 0.12	= : 0.07	e : 0.07	f : 0.07	d : 0.07	a : 0.05	# : 0.05	b : 0.05	i : 0.03	g : 0.01	" : 0.01	% : 0.01	h : 0.01	
d : 0.24	c : 0.11	! : 0.09	[ : 0.09	b : 0.07	= : 0.07	a : 0.07	e : 0.07	f : 0.07	i : 0.03	" : 0.01	# : 0.01	h : 0.01	
d : 0.27	c : 0.22	[ : 0.11	= : 0.07	e : 0.07	b : 0.05	f : 0.05	i : 0.03	! : 0.03	" : 0.01	a : 0.01	h : 0.01	
d : 0.31	c : 0.16	[ : 0.12	b : 0.11	= : 0.07	e : 0.07	f : 0.05	i : 0.03	" : 0.01	h : 0.01	
d : 0.25	c : 0.16	b : 0.12	a : 0.09	= : 0.07	e : 0.07	o : 0.07	f : 0.05	i : 0.03	[ : 0.01	h : 0.01	
n : 0.57	o : 0.18	d : 0.09	m : 0.03	c : 0.03	b : 0.01	= : 0.01	l : 0.01	a : 0.01	
n : 0.57	o : 0.20	m : 0.09	l : 0.05	c : 0.03	d : 0.03	
n : 0.57	o : 0.20	m : 0.11	l : 0.11	
n : 0.57	o : 0.20	m : 0.11	l : 0.09	= : 0.01	
n : 0.57	o : 0.20	m : 0.07	l : 0.05	c : 0.01	d : 0.01	e : 0.01	= : 0.01	a : 0.01	
d : 0.24	c : 0.16	o : 0.12	b : 0.11	= : 0.07	a : 0.07	e : 0.05	f : 0.05	i : 0.03	m : 0.01	] : 0.01	h : 0.01	
d : 0.31	c : 0.20	b : 0.11	= : 0.07	e : 0.07	] : 0.07	f : 0.05	i : 0.03	o : 0.01	a : 0.01	h : 0.01	
d : 0.31	c : 0.24	] : 0.11	= : 0.07	e : 0.07	f : 0.05	i : 0.03	b : 0.03	a : 0.03	h : 0.01	
d : 0.29	] : 0.11	c : 0.09	= : 0.07	e : 0.07	f : 0.07	a : 0.05	3 : 0.05	b : 0.05	i : 0.03	2 : 0.01	g : 0.01	4 : 0.01	h : 0.01	
] : 0.16	2 : 0.14	3 : 0.11	d : 0.09	= : 0.07	b : 0.07	f : 0.07	c : 0.05	e : 0.05	i : 0.03	a : 0.03	g : 0.03	4 : 0.01	h : 0.01	
2 : 0.14	3 : 0.14	c : 0.14	] : 0.12	b : 0.09	= : 0.07	f : 0.07	g : 0.05	i : 0.03	5 : 0.01	e : 0.01	4 : 0.01	h : 0.01	d : 0.01	
c : 0.27	b : 0.14	= : 0.11	3 : 0.11	2 : 0.05	a : 0.05	g : 0.05	4 : 0.05	i : 0.03	5 : 0.01	] : 0.01	f : 0.01	h : 0.01	d : 0.01	
c : 0.31	b : 0.16	= : 0.12	g : 0.07	3 : 0.07	] : 0.03	i : 0.03	4 : 0.03	2 : 0.03	5 : 0.01	f : 0.01	e : 0.01	h : 0.01	d : 0.01	
c : 0.20	] : 0.16	= : 0.16	g : 0.09	b : 0.07	3 : 0.07	a : 0.05	i : 0.03	4 : 0.03	2 : 0.03	5 : 0.01	f : 0.01	e : 0.01	
= : 0.18	c : 0.16	2 : 0.14	3 : 0.11	] : 0.09	g : 0.09	a : 0.05	i : 0.03	4 : 0.03	5 : 0.01	d : 0.01	b : 0.01	e : 0.01	
= : 0.20	c : 0.18	2 : 0.14	g : 0.09	3 : 0.09	] : 0.07	d : 0.05	i : 0.05	b : 0.03	e : 0.03	a : 0.01	
= : 0.24	c : 0.20	g : 0.11	b : 0.09	d : 0.07	i : 0.05	] : 0.05	3 : 0.05	2 : 0.03	e : 0.03	a : 0.01	f : 0.01	
= : 0.24	c : 0.16	g : 0.11	d : 0.11	] : 0.09	b : 0.05	i : 0.05	e : 0.05	2 : 0.03	4 : 0.01	f : 0.01	a : 0.01	3 : 0.01	
= : 0.24	] : 0.11	g : 0.11	c : 0.11	i : 0.09	d : 0.09	2 : 0.05	a : 0.05	e : 0.05	3 : 0.03	4 : 0.01	f : 0.01	
= : 0.24	g : 0.11	i : 0.11	d : 0.09	] : 0.07	e : 0.07	f : 0.07	a : 0.05	2 : 0.05	c : 0.05	3 : 0.03	4 : 0.01	
= : 0.24	i : 0.11	] : 0.09	g : 0.09	e : 0.07	f : 0.07	d : 0.07	c : 0.05	2 : 0.05	4 : 0.05	a : 0.03	3 : 0.01	: : 0.01	
= : 0.22	f : 0.12	c : 0.11	i : 0.11	g : 0.09	] : 0.07	e : 0.07	b : 0.05	4 : 0.03	d : 0.03	a : 0.03	2 : 0.01	
= : 0.20	c : 0.12	g : 0.11	i : 0.11	f : 0.11	b : 0.07	d : 0.07	e : 0.03	a : 0.03	4 : 0.03	: : 0.01	] : 0.01	3 : 0.01	2 : 0.01	

#score	839.9511615408308
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_UTR_m2_run2.txt

#BEAR
============lll============]ii	chr20:43955076-43955302(-)$1	226	20	50	17.0519
==========!!bbmmmmbb22========	chr2:102508244-102508516(+)$1	272	107	137	14.6939
"a!!iiiiiiiiimmmmiiiiiiiii22a]	chr17:79476977-79477208(-)$1	231	32	62	13.2082
=========!!ddddllldddd========	chr19:13054888-13055144(+)$1	256	194	224	14.9516
iiiieeeee[cccooooooccc333eeeee	chr19:48885812-48886036(-)$1	224	149	179	12.0282
ddiiiiiiiii[bbmmmmbb]iiiiiiiii	chr17:74730559-74730805(-)$1	246	171	201	13.1567
===========ssssssssss=========	chr6:138412341-138412582(-)$1	241	124	154	14.5691
[===========oooooo===========]	chr15:77242048-77242313(+)$1	265	42	72	19.6481
============mmmm============33	chr8:97622263-97622521(+)$1	258	201	231	16.5207
ggggggg!!ddddllldddd333ggggggg	chr19:57333937-57334205(-)$1	268	208	238	10.9729
ccc==========lll==========]ccc	chr16:23478543-23478774(-)$1	231	106	136	15.8160
ee==========oooooo==========:f	chr3:5025416-5025699(+)$1	283	116	146	17.2693
$ccc[iiiiiiiiillliiiiiiiii]ccc	chr3:23961091-23961351(+)$1	260	63	93	13.6922
[==========ssssssssss=========	chr4:177253106-177253408(+)$1	302	69	99	14.5345
####==========mmmm==========hh	chr6:11185123-11185372(-)$1	249	136	166	15.4487
======="""ddddmmmmdddd4444====	chr3:194123608-194123864(-)$1	256	183	213	12.8909
iiiii$$$$$cccnnnnnccc22iiiiiii	chr5:42800332-42800549(-)$1	217	6	36	11.8202
[ccc[gggggggrrrrrrrrrggggggg]c	chr2:101893493-101893731(-)$1	238	72	102	11.7582
d===========ppppppp===========	chr13:48835757-48836028(+)$1	271	32	62	14.1330
C:==========oooooo==========::	chr10:90974265-90974498(-)$1	233	13	43	14.1476
============oooooo============	chr14:70238523-70238768(+)$1	245	9	39	19.8060
==============mmmm============	chr6:132269625-132269847(-)$1	222	48	78	17.3823
===========ppppppp===========g	chr3:78646876-78647145(-)$1	269	196	226	14.2862
ee[ccc[eeeeeooooooeeeeeccc]eee	chr2:44065377-44065709(-)$1	332	28	58	11.0414
"eeeee!!ddddoooooodddd]eeeee44	chr8:22879301-22879559(-)$1	258	44	74	10.8287
==========eeeeellleeeee333====	chr17:70121778-70122036(+)$1	258	188	218	13.9329
==####dddd[aooooooa]dddd4444==	chr19:583102-583341(+)$1	239	196	226	12.5283
=======[a[bboooooobb]a]=======	chr6:33172014-33172251(+)$1	237	81	111	16.9082
iiiiiiiiivvvvvvvvvvvvviiiiiiii	chr11:64532562-64532808(-)$1	246	190	220	12.4356
iiiii####cccooooooccc333iiiiii	chr14:70238220-70238431(+)$1	211	132	162	15.7978
==========[bblllbb]==========c	chr20:4680561-4680854(+)$1	293	41	71	15.5856
b[============lll============]	chr12:120899629-120899876(-)$1	247	160	190	17.4460
::============mmmm============	chr11:47814164-47814425(-)$1	261	124	154	14.6371
[eeeee"""cccooooooccc]eeeeea]i	chr17:27076890-27077172(+)$1	282	126	156	12.3730
============oooooo============	chr19:48885867-48886107(-)$1	240	126	156	19.8060
dgggggggbb[aooooooabb]ggggggg2	chr17:40732917-40733161(-)$1	244	138	168	13.0004
[===========nnnnn===========]b	chr16:3777293-3777578(-)$1	285	122	152	16.5307
"dddd==========lll==========]d	chr7:6502280-6502531(-)$1	251	195	225	15.2450
iiiiiiiii[ddddllldddd]iiiiiiii	chr19:51307648-51307907(-)$1	259	14	44	13.8571
[ddddgggggggooooooggggggg333dd	chr11:71718913-71719228(-)$1	315	154	184	13.0324
=====!!eeeeennnnneeeee22======	chr6:75964301-75964548(-)$1	247	101	131	12.1839
e[cccgggggggooooooggggggg]ccc]	chr6:7287793-7288074(-)$1	281	146	176	13.6007
ggg!!eeeee[aooooooa]eeeeeggggg	chr4:1810199-1810443(+)$1	244	91	121	12.4931
========[fffffflllffffff333===	chr14:100744403-100744669(+)$1	266	165	195	12.4607
============ssssssssss========	chr17:30807763-30808042(+)$1	279	134	164	14.3518
=========[bboooooobb]=========	chr20:4833077-4833324(-)$1	247	201	231	17.9364
eeeeegggggggoooooogggggggfffff	chrX:119571938-119572186(-)$1	248	68	98	12.2956
============oooooo============	chr17:75494728-75495029(+)$1	301	193	223	19.8060

#otherMatches

#Seq PSSM
UGGAUUUAUAGAAUAUUUGUAAAUCUAUUU	chr20:43955076-43955302(-)$1	226	20	50	17.0519
UCCCAUUUUGUUUCUUUGGAUUUGGGGUGG	chr2:102508244-102508516(+)$1	272	107	137	14.6939
GGUUUGCAUUUACGCCUGUAAAUGUAUUCA	chr17:79476977-79477208(-)$1	231	32	62	13.2082
UGCUCUCCUUCCUGGAGCCCAGAGGAGGGC	chr19:13054888-13055144(+)$1	256	194	224	14.9516
GUACAGAACUGAUGGUUGAAUCUUUGUUCU	chr19:48885812-48886036(-)$1	224	149	179	12.0282
GUAGCAGUUGAGUAAUGCUGGUUAGCUGUU	chr17:74730559-74730805(-)$1	246	171	201	13.1567
AAAAUGCUAUAUUAAUAAAUCUGUAGUGUU	chr6:138412341-138412582(-)$1	241	124	154	14.5691
AAGGGUUUUAUUGUAUGAAAUAGAACUUUA	chr15:77242048-77242313(+)$1	265	42	72	19.6481
AUCAGAUCUUCUUUUGGGAGGAUUUGAUGU	chr8:97622263-97622521(+)$1	258	201	231	16.5207
CAAAAGUUUAGUCCAAGGCUCGUAUUUUUG	chr19:57333937-57334205(-)$1	268	208	238	10.9729
GUGUGGGAAAUGCGAAGCAUUUCUCAUCAU	chr16:23478543-23478774(-)$1	231	106	136	15.8160
guguguguaugugcgugugcgugcacaugu	chr3:5025416-5025699(+)$1	283	116	146	17.2693
UGGUGUAUCUUGUUUCUAAUAAGAUAAACU	chr3:23961091-23961351(+)$1	260	63	93	13.6922
UGGAAGAAACCAAGUCUAGUAGGUUUUUUC	chr4:177253106-177253408(+)$1	302	69	99	14.5345
AGCUGGAGAGGGAAAUCUUUUUUUUUCCCC	chr6:11185123-11185372(-)$1	249	136	166	15.4487
AAUGUAUUAAAAUUUGGUAAUUAUGUGUAC	chr3:194123608-194123864(-)$1	256	183	213	12.8909
GAAACGUAAACUAUGACCUAGGGGUUUCUG	chr5:42800332-42800549(-)$1	217	6	36	11.8202
UGAACUAAAGGACAUUUUAUUUUUUUUACU	chr2:101893493-101893731(-)$1	238	72	102	11.7582
CACAUUUUAAUUUUCCUCUAAUUAAAAUGU	chr13:48835757-48836028(+)$1	271	32	62	14.1330
UUUUGUUUUUUUAUAUCCAAGAAAAUGAUA	chr10:90974265-90974498(-)$1	233	13	43	14.1476
AAUUAGUUUAAUGCCUUAAUUAAACUAAUU	chr14:70238523-70238768(+)$1	245	9	39	19.8060
uguguguguguguguguauauauauauaua	chr6:132269625-132269847(-)$1	222	48	78	17.3823
AUGGUGAAGUAACAUGCAUACUUUAUUGUG	chr3:78646876-78647145(-)$1	269	196	226	14.2862
CGUCAGGUAAGGCAGAGCCCUUGCUGCUGC	chr2:44065377-44065709(-)$1	332	28	58	11.0414
agaggcgugagcccccaugcuuggccUUAC	chr8:22879301-22879559(-)$1	258	44	74	10.8287
AUUGCAAAUGUAGUGUAUCACUGAGUCAUU	chr17:70121778-70122036(+)$1	258	188	218	13.9329
CCUUGUCUGUGCAUCCGGGGGCAGCUCUGG	chr19:583102-583341(+)$1	239	196	226	12.5283
GGGUUAGUUGGUAUUCUCAUGGCCUGAUUU	chr6:33172014-33172251(+)$1	237	81	111	16.9082
UGGUUGUGGGUUUUUCAAGGUGCCAUAGCC	chr11:64532562-64532808(-)$1	246	190	220	12.4356
UGAAAACUAAUUGUAUUAAAUGUCUUUUGA	chr14:70238220-70238431(+)$1	211	132	162	15.7978
UCCUCAUCUUCCUGAUAGUGGGAUGAGGAA	chr20:4680561-4680854(+)$1	293	41	71	15.5856
aauuuuuuuuuuuuaaaGAAGAAAAAAAAC	chr12:120899629-120899876(-)$1	247	160	190	17.4460
UCCUGGAACAAGUAAAUCUACUUGUUUUGG	chr11:47814164-47814425(-)$1	261	124	154	14.6371
UCUGGUUAUUUAUUUCCUUAGUGCCAGGAG	chr17:27076890-27077172(+)$1	282	126	156	12.3730
UUCUCCUGGUUUUUUGGCAAAUUAGGGGGG	chr19:48885867-48886107(-)$1	240	126	156	19.8060
gugcaguggcacaaucucggcucacugcag	chr17:40732917-40733161(-)$1	244	138	168	13.0004
GGAGGGGGGUUUUGUUUGGAUUCUUUUUGU	chr16:3777293-3777578(-)$1	285	122	152	16.5307
CUAUAUUUAUUUUUUGGCAAAAGAUGAGCU	chr7:6502280-6502531(-)$1	251	195	225	15.2450
GCGGCGCGCACUAUAAAAUGGCGCGUGCUG	chr19:51307648-51307907(-)$1	259	14	44	13.8571
agguuccccagugguagagcugggguuuga	chr11:71718913-71719228(-)$1	315	154	184	13.0324
UUUACUGAAAUAACUCAUGUUUGUGUAGAA	chr6:75964301-75964548(-)$1	247	101	131	12.1839
AUGUUUUCAGAAUUCAUCUUUUGAACAACU	chr6:7287793-7288074(-)$1	281	146	176	13.6007
GUUUUUACAAGAUGUAUUUGUUGUAGACUU	chr4:1810199-1810443(+)$1	244	91	121	12.4931
UGAAUCAUGUAGUAUCAAAUAUUAGAUGUG	chr14:100744403-100744669(+)$1	266	165	195	12.4607
UGGUGCAUCUGUAUUCCAGCCAAUAGGUGU	chr17:30807763-30808042(+)$1	279	134	164	14.3518
UUAAGUAUUUUAAAAAUAUGUAAUAUUUGG	chr20:4833077-4833324(-)$1	247	201	231	17.9364
UGUUGAUAGUGAUGUAUUUUAUUAUUUUCU	chrX:119571938-119572186(-)$1	248	68	98	12.2956
GCGGCCUCCCCGAGGUUGUGGGGAGGCUGC	chr17:75494728-75495029(+)$1	301	193	223	19.8060

#DB
((((((((((((...)))))))))))).))	chr20:43955076-43955302(-)$1	1	20	50	17.0519
((((((((((..((....))..))))))))	chr2:102508244-102508516(+)$1	1	107	137	14.6939
.(..(((((((((....)))))))))..).	chr17:79476977-79477208(-)$1	1	32	62	13.2082
(((((((((..((((...))))))))))))	chr19:13054888-13055144(+)$1	1	194	224	14.9516
))))(((((.(((......)))...)))))	chr19:48885812-48886036(-)$1	1	149	179	12.0282
))(((((((((.((....)).)))))))))	chr17:74730559-74730805(-)$1	1	171	201	13.1567
(((((((((((..........)))))))))	chr6:138412341-138412582(-)$1	1	124	154	14.5691
.(((((((((((......))))))))))).	chr15:77242048-77242313(+)$1	1	42	72	19.6481
((((((((((((....))))))))))))..	chr8:97622263-97622521(+)$1	1	201	231	16.5207
(((((((..((((...))))...)))))))	chr19:57333937-57334205(-)$1	1	208	238	10.9729
(((((((((((((...)))))))))).)))	chr16:23478543-23478774(-)$1	1	106	136	15.8160
))((((((((((......)))))))))).(	chr3:5025416-5025699(+)$1	1	116	146	17.2693
.(((.(((((((((...))))))))).)))	chr3:23961091-23961351(+)$1	1	63	93	13.6922
.((((((((((..........)))))))))	chr4:177253106-177253408(+)$1	1	69	99	14.5345
....((((((((((....))))))))))))	chr6:11185123-11185372(-)$1	1	136	166	15.4487
(((((((...((((....))))....))))	chr3:194123608-194123864(-)$1	1	183	213	12.8909
(((((.....(((.....)))..)))))))	chr5:42800332-42800549(-)$1	1	6	36	11.8202
.(((.(((((((.........))))))).)	chr2:101893493-101893731(-)$1	1	72	102	11.7582
)(((((((((((.......)))))))))))	chr13:48835757-48836028(+)$1	1	32	62	14.1330
(.((((((((((......))))))))))..	chr10:90974265-90974498(-)$1	1	13	43	14.1476
((((((((((((......))))))))))))	chr14:70238523-70238768(+)$1	1	9	39	19.8060
((((((((((((((....))))))))))))	chr6:132269625-132269847(-)$1	1	48	78	17.3823
(((((((((((.......)))))))))))(	chr3:78646876-78647145(-)$1	1	196	226	14.2862
((.(((.(((((......)))))))).)))	chr2:44065377-44065709(-)$1	1	28	58	11.0414
.(((((..((((......)))).)))))..	chr8:22879301-22879559(-)$1	1	44	74	10.8287
(((((((((((((((...)))))...))))	chr17:70121778-70122036(+)$1	1	188	218	13.9329
((....((((.(......).))))....))	chr19:583102-583341(+)$1	1	196	226	12.5283
(((((((.(.((......)).).)))))))	chr6:33172014-33172251(+)$1	1	81	111	16.9082
(((((((((.............))))))))	chr11:64532562-64532808(-)$1	1	190	220	12.4356
(((((....(((......)))...))))))	chr14:70238220-70238431(+)$1	1	132	162	15.7978
((((((((((.((...)).))))))))))(	chr20:4680561-4680854(+)$1	1	41	71	15.5856
(.((((((((((((...)))))))))))).	chr12:120899629-120899876(-)$1	1	160	190	17.4460
..((((((((((((....))))))))))))	chr11:47814164-47814425(-)$1	1	124	154	14.6371
.(((((...(((......))).)))))).)	chr17:27076890-27077172(+)$1	1	126	156	12.3730
((((((((((((......))))))))))))	chr19:48885867-48886107(-)$1	1	126	156	19.8060
((((((((((.(......))).))))))).	chr17:40732917-40733161(-)$1	1	138	168	13.0004
.(((((((((((.....))))))))))).)	chr16:3777293-3777578(-)$1	1	122	152	16.5307
.((((((((((((((...)))))))))).)	chr7:6502280-6502531(-)$1	1	195	225	15.2450
(((((((((.((((...)))).))))))))	chr19:51307648-51307907(-)$1	1	14	44	13.8571
.(((((((((((......)))))))...))	chr11:71718913-71719228(-)$1	1	154	184	13.0324
(((((..(((((.....)))))..))))))	chr6:75964301-75964548(-)$1	1	101	131	12.1839
(.((((((((((......))))))).))).	chr6:7287793-7288074(-)$1	1	146	176	13.6007
(((..(((((.(......).))))))))))	chr4:1810199-1810443(+)$1	1	91	121	12.4931
((((((((.((((((...))))))...)))	chr14:100744403-100744669(+)$1	1	165	195	12.4607
((((((((((((..........))))))))	chr17:30807763-30808042(+)$1	1	134	164	14.3518
(((((((((.((......)).)))))))))	chr20:4833077-4833324(-)$1	1	201	231	17.9364
)))))(((((((......)))))))(((((	chrX:119571938-119572186(-)$1	1	68	98	12.2956
((((((((((((......))))))))))))	chr17:75494728-75495029(+)$1	1	193	223	19.8060

#PSSM
= : 0.39	[ : 0.12	i : 0.10	e : 0.08	" : 0.06	d : 0.06	g : 0.04	c : 0.02	$ : 0.02	# : 0.02	C : 0.02	b : 0.02	: : 0.02	
= : 0.47	i : 0.10	e : 0.10	d : 0.06	g : 0.06	c : 0.06	: : 0.04	[ : 0.04	a : 0.02	# : 0.02	
= : 0.54	i : 0.12	c : 0.08	g : 0.06	e : 0.06	# : 0.04	d : 0.04	! : 0.02	[ : 0.02	
= : 0.56	i : 0.12	c : 0.08	e : 0.06	! : 0.04	g : 0.04	# : 0.04	d : 0.04	
= : 0.58	i : 0.12	e : 0.08	g : 0.04	[ : 0.04	c : 0.04	d : 0.04	# : 0.02	! : 0.02	
= : 0.58	g : 0.12	i : 0.10	e : 0.08	# : 0.04	$ : 0.02	c : 0.02	! : 0.02	
= : 0.58	g : 0.12	i : 0.10	e : 0.04	! : 0.04	$ : 0.02	[ : 0.02	d : 0.02	# : 0.02	" : 0.02	
= : 0.54	i : 0.10	g : 0.10	e : 0.08	! : 0.04	" : 0.04	$ : 0.02	d : 0.02	[ : 0.02	# : 0.02	
= : 0.52	i : 0.10	e : 0.08	g : 0.08	" : 0.04	d : 0.04	! : 0.02	$ : 0.02	a : 0.02	# : 0.02	b : 0.02	[ : 0.02	
= : 0.47	[ : 0.08	g : 0.08	i : 0.06	d : 0.06	e : 0.06	c : 0.04	! : 0.02	" : 0.02	$ : 0.02	v : 0.02	b : 0.02	f : 0.02	
= : 0.41	c : 0.08	d : 0.08	g : 0.08	[ : 0.08	i : 0.06	e : 0.06	! : 0.04	b : 0.04	v : 0.02	f : 0.02	
= : 0.35	d : 0.10	c : 0.08	g : 0.08	e : 0.06	a : 0.06	b : 0.06	i : 0.04	s : 0.04	! : 0.02	[ : 0.02	p : 0.02	v : 0.02	f : 0.02	
o : 0.37	= : 0.12	d : 0.08	b : 0.06	s : 0.06	i : 0.04	c : 0.04	p : 0.04	n : 0.04	l : 0.02	m : 0.02	r : 0.02	e : 0.02	v : 0.02	f : 0.02	
o : 0.39	= : 0.10	l : 0.08	d : 0.06	s : 0.06	n : 0.06	b : 0.04	m : 0.04	p : 0.04	i : 0.02	r : 0.02	e : 0.02	v : 0.02	f : 0.02	
o : 0.39	m : 0.16	l : 0.14	s : 0.06	n : 0.06	p : 0.04	d : 0.02	r : 0.02	e : 0.02	v : 0.02	= : 0.02	f : 0.02	
o : 0.39	l : 0.20	m : 0.16	s : 0.06	n : 0.06	p : 0.04	= : 0.02	r : 0.02	v : 0.02	
o : 0.39	m : 0.14	l : 0.14	= : 0.06	s : 0.06	n : 0.06	p : 0.04	d : 0.02	r : 0.02	v : 0.02	b : 0.02	
o : 0.39	m : 0.12	= : 0.10	l : 0.08	s : 0.06	i : 0.04	d : 0.04	p : 0.04	n : 0.02	r : 0.02	v : 0.02	b : 0.02	e : 0.02	
= : 0.33	d : 0.10	b : 0.08	s : 0.06	c : 0.06	e : 0.06	a : 0.06	g : 0.06	i : 0.04	o : 0.02	r : 0.02	p : 0.02	v : 0.02	] : 0.02	f : 0.02	
= : 0.37	b : 0.10	d : 0.10	c : 0.08	s : 0.06	e : 0.06	g : 0.06	i : 0.04	] : 0.04	r : 0.02	v : 0.02	f : 0.02	
= : 0.37	d : 0.10	c : 0.08	e : 0.08	] : 0.06	s : 0.06	g : 0.06	i : 0.04	2 : 0.02	3 : 0.02	r : 0.02	v : 0.02	b : 0.02	f : 0.02	
= : 0.43	d : 0.08	g : 0.08	e : 0.08	i : 0.06	] : 0.06	2 : 0.04	3 : 0.04	c : 0.02	a : 0.02	v : 0.02	f : 0.02	s : 0.02	
= : 0.49	i : 0.10	g : 0.10	e : 0.08	3 : 0.06	2 : 0.04	] : 0.04	4 : 0.02	d : 0.02	f : 0.02	
= : 0.52	i : 0.12	g : 0.12	3 : 0.06	e : 0.06	4 : 0.02	c : 0.02	d : 0.02	2 : 0.02	f : 0.02	
= : 0.54	i : 0.14	g : 0.12	3 : 0.06	e : 0.06	4 : 0.04	c : 0.02	
= : 0.54	i : 0.14	g : 0.08	e : 0.06	3 : 0.06	4 : 0.04	c : 0.02	] : 0.02	f : 0.02	
= : 0.56	i : 0.10	g : 0.08	e : 0.06	] : 0.06	3 : 0.04	2 : 0.02	4 : 0.02	c : 0.02	f : 0.02	
= : 0.56	i : 0.10	g : 0.08	e : 0.06	c : 0.06	] : 0.02	2 : 0.02	4 : 0.02	a : 0.02	3 : 0.02	f : 0.02	
= : 0.45	i : 0.12	] : 0.08	g : 0.06	c : 0.06	e : 0.04	: : 0.04	a : 0.02	3 : 0.02	h : 0.02	4 : 0.02	d : 0.02	f : 0.02	
= : 0.37	i : 0.14	] : 0.08	c : 0.08	g : 0.06	e : 0.04	f : 0.04	d : 0.04	3 : 0.02	h : 0.02	: : 0.02	4 : 0.02	2 : 0.02	b : 0.02	

#score	699.902603528958
#seq	48
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_CDS_m3_run2.txt

#BEAR
eeeeeooooooeeeee=	chr19:18392061-18392310(-)$1	249	33	50	11.2877
eerrrrrrrrreeeee]	chr5:98236409-98236655(-)$1	246	157	174	7.5714
eeeeeooooooeeeee3	chrX:70793452-70793759(+)$1	307	229	246	11.7504
fffffooooooffffff	chr1:214817915-214818139(+)$1	224	102	119	8.7521
eeeeeeemmmmeeeee2	chr11:67810673-67810988(+)$1	315	204	221	7.4264
[ddddoooooodddd]c	chr16:2814653-2814894(+)$1	241	12	29	8.3414
=====oooooo======	chr3:47727478-47727762(-)$1	284	89	106	8.7422
[eeeeellleeeee]a2	chr10:129913693-129914010(-)$1	317	236	253	6.6092
!eeeeennnnneeeee2	chr9:37126768-37127058(+)$1	290	240	257	7.9168
eeeeeooooooeeeee:	chr14:56083134-56083445(+)$1	311	145	162	10.5454
dd[eeeeellleeeee8	chr17:27050608-27050860(+)$1	252	79	96	6.9404
fffbboooooobb]fff	chr19:47104519-47104794(+)$1	275	8	25	8.1765
[eeeeennnnneeeee2	chr13:45911523-45911779(-)$1	256	123	140	7.9453
d!!bboooooobb22dd	chr12:21788376-21788670(-)$1	294	223	240	7.3251
eeeeeooooooeeeee5	chr11:5290778-5291008(-)$1	230	38	55	10.9837
cccbboooooobb]ccc	chr15:44085158-44085450(+)$1	292	160	177	7.7912
fffffooooooffffff	chr2:152322048-152322310(+)$1	262	74	91	8.7521
ccceeeeellleeeee]	chr19:3980517-3980776(-)$1	259	187	204	7.0774
!!eeeeellleeeee22	chr5:138700234-138700485(+)$1	251	91	108	6.9691
dd[bboooooobbdddd	chr6:26123922-26124219(-)$1	297	95	112	7.9030
eeeeeooooooeeeee5	chr12:104336752-104336967(+)$1	215	55	72	10.9837
fffffooooooffffff	chr5:170814890-170815110(+)$1	220	194	211	8.7521
dddbboooooobb]ddd	chr11:65826885-65827139(+)$1	254	188	205	7.8873
eeeeeooooooeeeee:	chr2:152320763-152321017(+)$1	254	65	82	10.5454
eerrrrrrrrreeeee2	chr11:62297246-62297521(-)$1	275	66	83	7.6039
"ddddoooooodddd33	chr9:127623675-127623925(-)$1	250	40	57	8.7105
eeeeeooooooeeeeei	chr2:187368764-187369056(+)$1	292	73	90	11.2312
eeeeeooooooeeeee2	chr3:14239433-14239695(+)$1	262	127	144	11.5921
e[eeeeemmmmeeeee]	chr8:101725281-101725510(-)$1	229	4	21	7.1873
dd[bboooooobb]ddd	chr15:66795598-66795830(-)$1	232	205	222	8.0051
eeeeeooooooeeeee5	chr11:5290930-5291144(-)$1	214	174	191	10.9837
eeeeeooooooeeeee8	chr16:2814229-2814474(+)$1	245	44	61	11.2292
eerrrrrrrrreeeee2	chr11:62297321-62297602(-)$1	281	147	164	7.6039
fffffooooooffffff	chr20:30369971-30370208(+)$1	237	9	26	8.7521
eerrrrrrrrreeeeef	chr6:26056338-26056573(-)$1	235	198	215	7.2072
fffffooooooffffff	chr17:38555238-38555461(-)$1	223	95	112	8.7521
eee[ddddllldddd33	chrX:48652234-48652499(+)$1	265	49	66	5.7444
eeeeeooooooeeeee3	chr17:38556415-38556673(-)$1	258	162	179	11.7504
fffffooooooffffff	chr3:37365636-37365865(+)$1	229	30	47	8.7521
c[eeeeemmmmeeeee]	chr16:30080109-30080364(+)$1	255	184	201	6.9182
e!!bboooooobb]eee	chr12:95888712-95889004(+)$1	292	136	153	8.8821

#otherMatches

#Seq PSSM
CGGCGAUGAGGCGCUGA	chr19:18392061-18392310(-)$1	249	33	50	11.2877
CAUUUAUUGUUUGGUUA	chr5:98236409-98236655(-)$1	246	157	174	7.5714
CCUCAACCUUCUGGGGG	chrX:70793452-70793759(+)$1	307	229	246	11.7504
UCAAUCUAGACAUUGAG	chr1:214817915-214818139(+)$1	224	102	119	8.7521
CUAGAGCGCCUGCUCUG	chr11:67810673-67810988(+)$1	315	204	221	7.4264
UGGACACAGCAGUUCUG	chr16:2814653-2814894(+)$1	241	12	29	8.3414
UUCUUUUCUAUAGGAAG	chr3:47727478-47727762(-)$1	284	89	106	8.7422
GGCCACGCUGUGGCAGA	chr10:129913693-129914010(-)$1	317	236	253	6.6092
AAGACCAAUAGGGUCUA	chr9:37126768-37127058(+)$1	290	240	257	7.9168
GGCAAGAAGCAUUGCCC	chr14:56083134-56083445(+)$1	311	145	162	10.5454
GCUCACCCCUUGGGUGC	chr17:27050608-27050860(+)$1	252	79	96	6.9404
CGGCCGUUGAGGGACCG	chr19:47104519-47104794(+)$1	275	8	25	8.1765
UCUGUCUUUGUGGCGGC	chr13:45911523-45911779(-)$1	256	123	140	7.9453
AAAACUACAAUGUGAUU	chr12:21788376-21788670(-)$1	294	223	240	7.3251
UUGGGAAAGUCCUCAAG	chr11:5290778-5291008(-)$1	230	38	55	10.9837
CCUGGGUUAGACCAAGG	chr15:44085158-44085450(+)$1	292	160	177	7.7912
UGGCUGAAACUGGCCAU	chr2:152322048-152322310(+)$1	262	74	91	8.7521
UGGCCUGAAGGUCAGGA	chr19:3980517-3980776(-)$1	259	187	204	7.0774
AUGAAUGGUUUAUUCCA	chr5:138700234-138700485(+)$1	251	91	108	6.9691
GCCAGCCAAGUCUGCUC	chr6:26123922-26124219(-)$1	297	95	112	7.9030
CCAGGGCCAGACUUGGA	chr12:104336752-104336967(+)$1	215	55	72	10.9837
UCCGGCUGCAACCGGGU	chr5:170814890-170815110(+)$1	220	194	211	8.7521
CUGAGAGGAUCCUGCAG	chr11:65826885-65827139(+)$1	254	188	205	7.8873
AAUCAGUCACAUGAUUA	chr2:152320763-152321017(+)$1	254	65	82	10.5454
AGAGAUAAAAGCUCCUG	chr11:62297246-62297521(-)$1	275	66	83	7.6039
AGGGGAUAUGGCCCCGC	chr9:127623675-127623925(-)$1	250	40	57	8.7105
GCAUGUAUCGUCAUGCA	chr2:187368764-187369056(+)$1	292	73	90	11.2312
UCUUUGUCCGGGGAGAU	chr3:14239433-14239695(+)$1	262	127	144	11.5921
UUUGAAAUUUUUUUCAU	chr8:101725281-101725510(-)$1	229	4	21	7.1873
GUCCGUGUUUCUGAACC	chr15:66795598-66795830(-)$1	232	205	222	8.0051
UUGGGAAAGUCCUCAAG	chr11:5290930-5291144(-)$1	214	174	191	10.9837
GCAGGCCAAAUCCUGUC	chr16:2814229-2814474(+)$1	245	44	61	11.2292
AGAGAUAAAAGCUCCUG	chr11:62297321-62297602(-)$1	281	147	164	7.6039
AGGUGAAUCACCACUUA	chr20:30369971-30370208(+)$1	237	9	26	8.7521
GCAAACGAAAGGCACCG	chr6:26056338-26056573(-)$1	235	198	215	7.2072
GAAUUAAUUAAAGUUCU	chr17:38555238-38555461(-)$1	223	95	112	8.7521
UCCAGUCUGGGAGGCAC	chrX:48652234-48652499(+)$1	265	49	66	5.7444
GGACUACACAAAGUCUU	chr17:38556415-38556673(-)$1	258	162	179	11.7504
CUCUUGAAGGAAAGGGA	chr3:37365636-37365865(+)$1	229	30	47	8.7521
CAGCAGGUGGGCCUGCA	chr16:30080109-30080364(+)$1	255	184	201	6.9182
CCGGUGACACAACAGUA	chr12:95888712-95889004(+)$1	292	136	153	8.8821

#DB
(((((......)))))(	chr19:18392061-18392310(-)$1	1	33	50	11.2877
((.........))))).	chr5:98236409-98236655(-)$1	1	157	174	7.5714
(((((......))))).	chrX:70793452-70793759(+)$1	1	229	246	11.7504
(((((......))))))	chr1:214817915-214818139(+)$1	1	102	119	8.7521
(((((((....))))).	chr11:67810673-67810988(+)$1	1	204	221	7.4264
.((((......)))).)	chr16:2814653-2814894(+)$1	1	12	29	8.3414
(((((......))))))	chr3:47727478-47727762(-)$1	1	89	106	8.7422
.(((((...))))).).	chr10:129913693-129914010(-)$1	1	236	253	6.6092
.(((((.....))))).	chr9:37126768-37127058(+)$1	1	240	257	7.9168
(((((......))))).	chr14:56083134-56083445(+)$1	1	145	162	10.5454
((.(((((...))))).	chr17:27050608-27050860(+)$1	1	79	96	6.9404
(((((......)).)))	chr19:47104519-47104794(+)$1	1	8	25	8.1765
.(((((.....))))).	chr13:45911523-45911779(-)$1	1	123	140	7.9453
(..((......))..))	chr12:21788376-21788670(-)$1	1	223	240	7.3251
(((((......))))).	chr11:5290778-5291008(-)$1	1	38	55	10.9837
(((((......)).)))	chr15:44085158-44085450(+)$1	1	160	177	7.7912
(((((......))))))	chr2:152322048-152322310(+)$1	1	74	91	8.7521
((((((((...))))).	chr19:3980517-3980776(-)$1	1	187	204	7.0774
..(((((...)))))..	chr5:138700234-138700485(+)$1	1	91	108	6.9691
((.((......))))))	chr6:26123922-26124219(-)$1	1	95	112	7.9030
(((((......))))).	chr12:104336752-104336967(+)$1	1	55	72	10.9837
(((((......))))))	chr5:170814890-170815110(+)$1	1	194	211	8.7521
(((((......)).)))	chr11:65826885-65827139(+)$1	1	188	205	7.8873
(((((......))))).	chr2:152320763-152321017(+)$1	1	65	82	10.5454
((.........))))).	chr11:62297246-62297521(-)$1	1	66	83	7.6039
.((((......))))..	chr9:127623675-127623925(-)$1	1	40	57	8.7105
(((((......))))))	chr2:187368764-187369056(+)$1	1	73	90	11.2312
(((((......))))).	chr3:14239433-14239695(+)$1	1	127	144	11.5921
(.(((((....))))).	chr8:101725281-101725510(-)$1	1	4	21	7.1873
((.((......)).)))	chr15:66795598-66795830(-)$1	1	205	222	8.0051
(((((......))))).	chr11:5290930-5291144(-)$1	1	174	191	10.9837
(((((......))))).	chr16:2814229-2814474(+)$1	1	44	61	11.2292
((.........))))).	chr11:62297321-62297602(-)$1	1	147	164	7.6039
(((((......))))))	chr20:30369971-30370208(+)$1	1	9	26	8.7521
((.........))))))	chr6:26056338-26056573(-)$1	1	198	215	7.2072
(((((......))))))	chr17:38555238-38555461(-)$1	1	95	112	8.7521
(((.((((...))))..	chrX:48652234-48652499(+)$1	1	49	66	5.7444
(((((......))))).	chr17:38556415-38556673(-)$1	1	162	179	11.7504
(((((......))))))	chr3:37365636-37365865(+)$1	1	30	47	8.7521
(.(((((....))))).	chr16:30080109-30080364(+)$1	1	184	201	6.9182
(..((......)).)))	chr12:95888712-95889004(+)$1	1	136	153	8.8821

#PSSM
e : 0.46	f : 0.17	d : 0.12	[ : 0.07	c : 0.07	! : 0.04	= : 0.02	" : 0.02	
e : 0.48	f : 0.17	d : 0.14	! : 0.07	c : 0.04	[ : 0.04	= : 0.02	
e : 0.46	f : 0.17	r : 0.09	d : 0.07	[ : 0.07	! : 0.04	c : 0.04	= : 0.02	
e : 0.48	b : 0.17	f : 0.14	r : 0.09	d : 0.04	= : 0.02	[ : 0.02	
e : 0.48	b : 0.17	f : 0.14	r : 0.09	d : 0.07	= : 0.02	
o : 0.65	e : 0.21	r : 0.09	d : 0.02	
o : 0.65	e : 0.14	r : 0.09	n : 0.04	l : 0.02	d : 0.02	
o : 0.65	r : 0.09	m : 0.07	l : 0.04	n : 0.04	e : 0.04	d : 0.02	
o : 0.65	l : 0.12	r : 0.09	m : 0.07	n : 0.04	
o : 0.65	r : 0.09	l : 0.09	m : 0.07	n : 0.04	e : 0.02	
o : 0.65	r : 0.09	m : 0.07	l : 0.07	e : 0.04	n : 0.04	
e : 0.58	b : 0.17	f : 0.14	d : 0.07	= : 0.02	
e : 0.58	b : 0.17	f : 0.14	d : 0.07	= : 0.02	
e : 0.58	f : 0.14	] : 0.12	d : 0.09	= : 0.02	2 : 0.02	
e : 0.58	f : 0.17	d : 0.14	= : 0.02	] : 0.02	2 : 0.02	c : 0.02	
e : 0.56	f : 0.17	d : 0.09	3 : 0.04	] : 0.02	= : 0.02	a : 0.02	c : 0.02	2 : 0.02	
f : 0.19	2 : 0.19	] : 0.09	3 : 0.09	d : 0.09	5 : 0.07	= : 0.04	c : 0.04	: : 0.04	8 : 0.04	i : 0.02	e : 0.02	

#score	357.88277484820253
#seq	41
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_transcript_m3_run1.txt

#BEAR
:eeeeeqqqqqqqqeeeee	chr17:27050634-27050863(+)$1	229	170	189	14.4387
eeddddqqqqqqqqdddd2	chr17:74557618-74557825(+)$1	207	122	141	14.5958
gggg[aqqqqqqqqagggg	chr9:136216198-136216425(+)$1	227	56	75	13.5382
)eeeeeqqqqqqqqeeeee	chr14:21860265-21860506(-)$1	241	82	101	14.8077
e[ddddqqqqqqqqdddd4	chr6:31804777-31804981(+)$1	204	173	192	14.7685
c!!cccqqqqqqqqccc22	chr6:132271149-132271384(-)$1	235	78	97	14.2498
ffffffqqqqqqqqfffff	chr4:74279205-74279419(+)$1	214	154	173	13.0343
b!!cccqqqqqqqqccc22	chr17:74554774-74555015(+)$1	241	130	149	14.1464
!eeeeeqqqqqqqqeeeee	chr7:98479275-98479598(+)$1	323	134	153	15.1095
d[ddddqqqqqqqqdddd]	chr18:47015528-47015779(-)$1	251	193	212	14.7402
ebbcccqqqqqqqqccc]b	chr19:12814313-12814539(-)$1	226	53	72	13.2638
a[ddddqqqqqqqqdddda	chr1:8926451-8926661(-)$1	210	151	170	14.7717
ggggggqqqqqqqqggggg	chr11:93454846-93455133(+)$1	287	129	148	13.6719
eee[bbqqqqqqqqbbeee	chr6:31504078-31504296(-)$1	218	131	150	13.2306
!!ddddqqqqqqqqdddd]	chr2:216262367-216262615(-)$1	248	156	175	14.9425
e!!cccqqqqqqqqccc]e	chr1:116935420-116935692(+)$1	272	187	206	14.5266
:eeeeeqqqqqqqqeeeee	chr15:66795085-66795302(-)$1	217	14	33	14.4387
ggggbbqqqqqqqqbb]gg	chr3:186336224-186336432(+)$1	208	17	36	12.5701
""ddddqqqqqqqqdddd]	chr2:133015123-133015365(-)$1	242	160	179	14.7991
:eeeeeqqqqqqqqeeeee	chr18:47017954-47018166(-)$1	212	31	50	14.4387
ffffffqqqqqqqqfffff	chr17:27050607-27050834(+)$1	227	140	159	13.0343
ccc!!aqqqqqqqqa22cc	chr11:75115364-75115621(+)$1	257	207	226	12.6382
ceeeeeqqqqqqqqeeeee	chr17:27050600-27050807(+)$1	207	147	166	15.0298
$$$cccqqqqqqqqccc44	chr3:186502528-186502748(+)$1	220	8	27	13.7157
#eeeeeqqqqqqqqeeeee	chr20:23614428-23614687(-)$1	259	33	52	15.0739
ccddddqqqqqqqqdddd0	chrX:132887833-132888119(-)$1	286	76	95	14.1744
""ddddqqqqqqqqdddd]	chr1:76253475-76253752(+)$1	277	240	259	14.7991
b[ddddqqqqqqqqdddd2	chr10:73587755-73587992(-)$1	237	108	127	14.6480
ee[cccqqqqqqqqccc]e	chr3:133475025-133475272(+)$1	247	21	40	14.4750
)eeeeeqqqqqqqqeeeee	chr14:21860234-21860465(-)$1	231	41	60	14.8077
ddddddqqqqqqqqdddd:	chr11:75111334-75111576(+)$1	242	109	128	13.4934
e[ddddqqqqqqqqdddd4	chr6:31804781-31804985(+)$1	204	169	188	14.7685
d[ddddqqqqqqqqddddd	chr1:76255060-76255266(+)$1	206	12	31	14.5189
f:ddddqqqqqqqqddddf	chr11:62621299-62621532(-)$1	233	73	92	13.4497
:eeeeeqqqqqqqqeeeee	chr1:173833904-173834141(-)$1	237	118	137	14.4387
:eeeeeqqqqqqqqeeeee	chr14:21860217-21860434(-)$1	217	10	29	14.4387
ccccccqqqqqqqqccc:H	chr9:136217611-136217859(+)$1	248	133	152	12.4114
:eeeeeqqqqqqqqeeeee	chr16:70571807-70572093(+)$1	286	131	150	14.4387
cc[cccqqqqqqqqccc]c	chr2:203142737-203142983(+)$1	246	193	212	14.2443
:eeeeeqqqqqqqqeeeee	chr11:75115438-75115678(+)$1	240	148	167	14.4387
feeeeeqqqqqqqqeeeee	chr10:70514827-70515088(+)$1	261	38	57	14.9075
Deeeeeqqqqqqqqeeeee	chr18:47017966-47018187(-)$1	221	52	71	14.2816
:eeeeeqqqqqqqqeeeee	chr1:173833902-173834104(-)$1	202	81	100	14.4387
b[ddddqqqqqqqqdddd5	chr2:216247990-216248261(-)$1	271	37	56	13.9881
bb[cccqqqqqqqqccc]b	chr12:6619566-6619812(+)$1	246	119	138	13.6809
dd[cccqqqqqqqqccc]d	chr1:45242063-45242267(+)$1	204	52	71	14.0117
ffffffqqqqqqqqfffff	chr13:27829114-27829339(+)$1	225	190	209	13.0343
e[ddddqqqqqqqqdddd4	chr6:31804756-31804977(+)$1	221	194	213	14.7685
!!ddddqqqqqqqqdddd2	chr15:25346622-25346913(+)$1	291	235	254	14.8284
ddddddqqqqqqqqdddd]	chr11:17097304-17097516(-)$1	212	40	59	14.4663
[eeeeeqqqqqqqqeeeee	chr11:93466307-93466558(-)$1	251	192	211	15.0424
:eeeeeqqqqqqqqeeeee	chr19:10220336-10220604(+)$1	268	137	156	14.4387
ddd[bbqqqqqqqqbbddd	chr1:173835024-173835260(-)$1	236	212	231	12.6192
cc[cccqqqqqqqqccc]c	chr2:203142783-203143008(+)$1	225	147	166	14.2443
bb[cccqqqqqqqqccc]b	chr17:7480119-7480347(+)$1	228	166	185	13.6809
c!!cccqqqqqqqqccc22	chr17:27050346-27050595(+)$1	249	3	22	14.2498
ffffffqqqqqqqqfffff	chr2:216263926-216264160(-)$1	234	107	126	13.0343
!!ddddqqqqqqqqdddd2	chr6:132271466-132271694(-)$1	228	77	96	14.8284
eeddddqqqqqqqqdddd2	chr17:74557662-74557880(+)$1	218	78	97	14.5958
[eeeeeqqqqqqqqeeeee	chr17:16342720-16342960(+)$1	240	108	127	15.0424
ffffffqqqqqqqqfffff	chr11:63676497-63676724(+)$1	227	114	133	13.0343
)eeeeeqqqqqqqqeeeee	chr14:21860306-21860513(-)$1	207	89	108	14.8077
:eeeeeqqqqqqqqeeeee	chr18:47017935-47018151(-)$1	216	16	35	14.4387
:eeeeeqqqqqqqqeeeee	chr18:47017987-47018192(-)$1	205	57	76	14.4387
ffffffqqqqqqqqfffff	chr17:74557094-74557298(+)$1	204	130	149	13.0343
ggggggqqqqqqqqggggg	chr1:173835367-173835601(-)$1	234	179	198	13.6719
ff[cccqqqqqqqqcccff	chr9:124065095-124065404(+)$1	309	76	95	13.9841
"""cccqqqqqqqqccc44	chr19:6682128-6682336(-)$1	208	25	44	14.3180
ebbcccqqqqqqqqccc]b	chr19:12814339-12814583(-)$1	244	97	116	13.2638

#otherMatches

#Seq PSSM
CAUUUUGCUUUCUAAAAAU	chr17:27050634-27050863(+)$1	229	170	189	14.4387
CUGUCUGAAAAUCUGGACU	chr17:74557618-74557825(+)$1	207	122	141	14.5958
GAUGAUGUAAAAGAAUAUU	chr9:136216198-136216425(+)$1	227	56	75	13.5382
AGCAGGAUUUUGCCCCUGU	chr14:21860265-21860506(-)$1	241	82	101	14.8077
AGGGCCAAUGGGAGGGCCA	chr6:31804777-31804981(+)$1	204	173	192	14.7685
UCGCAGCUUACCGACUGGA	chr6:132271149-132271384(-)$1	235	78	97	14.2498
AUAAGAAAUUAUUCUUUUA	chr4:74279205-74279419(+)$1	214	154	173	13.0343
CUGAAAUGGUAUCUUUUGU	chr17:74554774-74555015(+)$1	241	130	149	14.1464
GUGUAUGUCUGGGAGUACA	chr7:98479275-98479598(+)$1	323	134	153	15.1095
UAAGUUUGUUUCUUGACUA	chr18:47015528-47015779(-)$1	251	193	212	14.7402
GGCCUCAAGUGAUGGAGAG	chr19:12814313-12814539(-)$1	226	53	72	13.2638
GCAGGAGUUCAUGAUCCUC	chr1:8926451-8926661(-)$1	210	151	170	14.7717
AAGGUUUUACUACUGAUCU	chr11:93454846-93455133(+)$1	287	129	148	13.6719
CCAUGACUGAUGGCUCUGG	chr6:31504078-31504296(-)$1	218	131	150	13.2306
AAGUCCUGAGAGAUGGACA	chr2:216262367-216262615(-)$1	248	156	175	14.9425
CAGGUCUGAAGAUCGAUGG	chr1:116935420-116935692(+)$1	272	187	206	14.5266
UUGAAGAGAAGGGGCUUCA	chr15:66795085-66795302(-)$1	217	14	33	14.4387
GGAGGCUACUUCCCGCUCU	chr3:186336224-186336432(+)$1	208	17	36	12.5701
UUGGGGUACCGGAUCCCCC	chr2:133015123-133015365(-)$1	242	160	179	14.7991
AAAGGGAAAGCAAGCCCUU	chr18:47017954-47018166(-)$1	212	31	50	14.4387
UAGUCAUAAUUAACUGACU	chr17:27050607-27050834(+)$1	227	140	159	13.0343
CUAUUUAUUGAUCGAUUUA	chr11:75115364-75115621(+)$1	257	207	226	12.6382
UAGUCAUAAUUAACUGACU	chr17:27050600-27050807(+)$1	207	147	166	15.0298
AAAAGGGAAAGUAACCUCU	chr3:186502528-186502748(+)$1	220	8	27	13.7157
CUCUGUUUCCUUUCACAGA	chr20:23614428-23614687(-)$1	259	33	52	15.0739
GGUCAAUGAAUUGUUUGAC	chrX:132887833-132888119(-)$1	286	76	95	14.1744
AAAAGUAGUAAACAACUUA	chr1:76253475-76253752(+)$1	277	240	259	14.7991
CAGAUGGUGACUGACAUCC	chr10:73587755-73587992(-)$1	237	108	127	14.6480
GACAGUGUGAUCAGACUCU	chr3:133475025-133475272(+)$1	247	21	40	14.4750
AGCAGGAUUUUGCCCCUGU	chr14:21860234-21860465(-)$1	231	41	60	14.8077
AGAGAUGAUGACGAGUCUG	chr11:75111334-75111576(+)$1	242	109	128	13.4934
AGGGCCAAUGGGAGGGCCA	chr6:31804781-31804985(+)$1	204	169	188	14.7685
AUAGUAUGUUCUCUUACUU	chr1:76255060-76255266(+)$1	206	12	31	14.5189
UAUGCCACCAAGUAGGCAG	chr11:62621299-62621532(-)$1	233	73	92	13.4497
UUCAGCAGACUAACGCUGA	chr1:173833904-173834141(-)$1	237	118	137	14.4387
AGCAGGAUUUUGCCCCUGU	chr14:21860217-21860434(-)$1	217	10	29	14.4387
GGUCAGCAUUGCAUCUGAG	chr9:136217611-136217859(+)$1	248	133	152	12.4114
CAUGUCUCUUCUCUGACAU	chr16:70571807-70572093(+)$1	286	131	150	14.4387
AUAGGGCUGGUUUUCCCCA	chr2:203142737-203142983(+)$1	246	193	212	14.2443
UUUAGAGGCAUUUGUCUGA	chr11:75115438-75115678(+)$1	240	148	167	14.4387
GAAGUUUGAAUUAUAGCUU	chr10:70514827-70515088(+)$1	261	38	57	14.9075
AAAGGGAAAGCAAGCCCUU	chr18:47017966-47018187(-)$1	221	52	71	14.2816
UUCAGCAGACUAACGCUGA	chr1:173833902-173834104(-)$1	202	81	100	14.4387
CCCUGCUUUUAUUUGUAGA	chr2:216247990-216248261(-)$1	271	37	56	13.9881
AUGAAACACAGAUCUUUGG	chr12:6619566-6619812(+)$1	246	119	138	13.6809
GAGGCUUAAUUUUCAGCAU	chr1:45242063-45242267(+)$1	204	52	71	14.0117
ACUUUGCAGUUACUUAAAG	chr13:27829114-27829339(+)$1	225	190	209	13.0343
AGGGCCAAUGGGAGGGCCA	chr6:31804756-31804977(+)$1	221	194	213	14.7685
AACUAGUUGGUCAGUUAGA	chr15:25346622-25346913(+)$1	291	235	254	14.8284
cucaguaaauguuagcuGU	chr11:17097304-17097516(-)$1	212	40	59	14.4663
UCUUAAAUUUAUACUUGGG	chr11:93466307-93466558(-)$1	251	192	211	15.0424
AUUGCUCUGUCCAAAGUAA	chr19:10220336-10220604(+)$1	268	137	156	14.4387
CACUCUUAUUUCUUAGGUG	chr1:173835024-173835260(-)$1	236	212	231	12.6192
AUAGGGCUGGUUUUCCCCA	chr2:203142783-203143008(+)$1	225	147	166	14.2443
UCUCUGUUUUUUAUCAGCG	chr17:7480119-7480347(+)$1	228	166	185	13.6809
GAGUGCGACACGUGGCAGA	chr17:27050346-27050595(+)$1	249	3	22	14.2498
CACCUUACAACACCGAGGU	chr2:216263926-216264160(-)$1	234	107	126	13.0343
GCUGCAAGUACCAGUGCAC	chr6:132271466-132271694(-)$1	228	77	96	14.8284
CUGUCUGAAAAUCUGGACU	chr17:74557662-74557880(+)$1	218	78	97	14.5958
AUACUUGUAAUAGGAAGUG	chr17:16342720-16342960(+)$1	240	108	127	15.0424
GGCUCUCUCUCAACGGGGU	chr11:63676497-63676724(+)$1	227	114	133	13.0343
AGCAGGAUUUUGCCCCUGU	chr14:21860306-21860513(-)$1	207	89	108	14.8077
AAAGGGAAAGCAAGCCCUU	chr18:47017935-47018151(-)$1	216	16	35	14.4387
AAAGGGAAAGCAAGCCCUU	chr18:47017987-47018192(-)$1	205	57	76	14.4387
GAAGGCAAAGAAAGGCCUU	chr17:74557094-74557298(+)$1	204	130	149	13.0343
GCUGUUAAUGGUUAAGCAG	chr1:173835367-173835601(-)$1	234	179	198	13.6719
GCUCUGAUGUCCCGUAGGC	chr9:124065095-124065404(+)$1	309	76	95	13.9841
CUUGUCCAGGAACAGACCC	chr19:6682128-6682336(-)$1	208	25	44	14.3180
GGCCUCAAGUGAUGGAGAG	chr19:12814339-12814583(-)$1	244	97	116	13.2638

#DB
.(((((........)))))	chr17:27050634-27050863(+)$1	1	170	189	14.4387
((((((........)))).	chr17:74557618-74557825(+)$1	1	122	141	14.5958
((((.(........)))))	chr9:136216198-136216425(+)$1	1	56	75	13.5382
.(((((........)))))	chr14:21860265-21860506(-)$1	1	82	101	14.8077
(.((((........)))).	chr6:31804777-31804981(+)$1	1	173	192	14.7685
(..(((........)))..	chr6:132271149-132271384(-)$1	1	78	97	14.2498
((((((........)))))	chr4:74279205-74279419(+)$1	1	154	173	13.0343
(..(((........)))..	chr17:74554774-74555015(+)$1	1	130	149	14.1464
.(((((........)))))	chr7:98479275-98479598(+)$1	1	134	153	15.1095
(.((((........)))).	chr18:47015528-47015779(-)$1	1	193	212	14.7402
((((((........))).)	chr19:12814313-12814539(-)$1	1	53	72	13.2638
(.((((........)))))	chr1:8926451-8926661(-)$1	1	151	170	14.7717
((((((........)))))	chr11:93454846-93455133(+)$1	1	129	148	13.6719
(((.((........)))))	chr6:31504078-31504296(-)$1	1	131	150	13.2306
..((((........)))).	chr2:216262367-216262615(-)$1	1	156	175	14.9425
(..(((........))).)	chr1:116935420-116935692(+)$1	1	187	206	14.5266
.(((((........)))))	chr15:66795085-66795302(-)$1	1	14	33	14.4387
((((((........)).))	chr3:186336224-186336432(+)$1	1	17	36	12.5701
..((((........)))).	chr2:133015123-133015365(-)$1	1	160	179	14.7991
.(((((........)))))	chr18:47017954-47018166(-)$1	1	31	50	14.4387
((((((........)))))	chr17:27050607-27050834(+)$1	1	140	159	13.0343
(((..(........)..))	chr11:75115364-75115621(+)$1	1	207	226	12.6382
)(((((........)))))	chr17:27050600-27050807(+)$1	1	147	166	15.0298
...(((........)))..	chr3:186502528-186502748(+)$1	1	8	27	13.7157
.(((((........)))))	chr20:23614428-23614687(-)$1	1	33	52	15.0739
((((((........)))).	chrX:132887833-132888119(-)$1	1	76	95	14.1744
..((((........)))).	chr1:76253475-76253752(+)$1	1	240	259	14.7991
(.((((........)))).	chr10:73587755-73587992(-)$1	1	108	127	14.6480
((.(((........))).)	chr3:133475025-133475272(+)$1	1	21	40	14.4750
.(((((........)))))	chr14:21860234-21860465(-)$1	1	41	60	14.8077
))((((........)))).	chr11:75111334-75111576(+)$1	1	109	128	13.4934
(.((((........)))).	chr6:31804781-31804985(+)$1	1	169	188	14.7685
(.((((........)))))	chr1:76255060-76255266(+)$1	1	12	31	14.5189
).((((........))))(	chr11:62621299-62621532(-)$1	1	73	92	13.4497
.(((((........)))))	chr1:173833904-173834141(-)$1	1	118	137	14.4387
.(((((........)))))	chr14:21860217-21860434(-)$1	1	10	29	14.4387
)))(((........))).)	chr9:136217611-136217859(+)$1	1	133	152	12.4114
.(((((........)))))	chr16:70571807-70572093(+)$1	1	131	150	14.4387
((.(((........))).)	chr2:203142737-203142983(+)$1	1	193	212	14.2443
.(((((........)))))	chr11:75115438-75115678(+)$1	1	148	167	14.4387
)(((((........)))))	chr10:70514827-70515088(+)$1	1	38	57	14.9075
((((((........)))))	chr18:47017966-47018187(-)$1	1	52	71	14.2816
.(((((........)))))	chr1:173833902-173834104(-)$1	1	81	100	14.4387
(.((((........)))).	chr2:216247990-216248261(-)$1	1	37	56	13.9881
((.(((........))).)	chr12:6619566-6619812(+)$1	1	119	138	13.6809
((.(((........))).)	chr1:45242063-45242267(+)$1	1	52	71	14.0117
((((((........)))))	chr13:27829114-27829339(+)$1	1	190	209	13.0343
(.((((........)))).	chr6:31804756-31804977(+)$1	1	194	213	14.7685
..((((........)))).	chr15:25346622-25346913(+)$1	1	235	254	14.8284
((((((........)))).	chr11:17097304-17097516(-)$1	1	40	59	14.4663
.(((((........)))))	chr11:93466307-93466558(-)$1	1	192	211	15.0424
.(((((........)))))	chr19:10220336-10220604(+)$1	1	137	156	14.4387
(((.((........)))))	chr1:173835024-173835260(-)$1	1	212	231	12.6192
((.(((........))).)	chr2:203142783-203143008(+)$1	1	147	166	14.2443
((.(((........))).)	chr17:7480119-7480347(+)$1	1	166	185	13.6809
(..(((........)))..	chr17:27050346-27050595(+)$1	1	3	22	14.2498
((((((........)))))	chr2:216263926-216264160(-)$1	1	107	126	13.0343
..((((........)))).	chr6:132271466-132271694(-)$1	1	77	96	14.8284
((((((........)))).	chr17:74557662-74557880(+)$1	1	78	97	14.5958
.(((((........)))))	chr17:16342720-16342960(+)$1	1	108	127	15.0424
((((((........)))))	chr11:63676497-63676724(+)$1	1	114	133	13.0343
.(((((........)))))	chr14:21860306-21860513(-)$1	1	89	108	14.8077
.(((((........)))))	chr18:47017935-47018151(-)$1	1	16	35	14.4387
.(((((........)))))	chr18:47017987-47018192(-)$1	1	57	76	14.4387
((((((........)))))	chr17:74557094-74557298(+)$1	1	130	149	13.0343
((((((........)))))	chr1:173835367-173835601(-)$1	1	179	198	13.6719
((.(((........)))))	chr9:124065095-124065404(+)$1	1	76	95	13.9841
...(((........)))..	chr19:6682128-6682336(-)$1	1	25	44	14.3180
((((((........))).)	chr19:12814339-12814583(-)$1	1	97	116	13.2638

#PSSM
: : 0.15	e : 0.14	f : 0.13	c : 0.11	d : 0.08	b : 0.07	g : 0.05	! : 0.05	) : 0.04	" : 0.04	[ : 0.02	a : 0.01	$ : 0.01	# : 0.01	D : 0.01	
e : 0.36	[ : 0.11	! : 0.10	f : 0.10	c : 0.07	g : 0.05	b : 0.05	d : 0.05	" : 0.04	$ : 0.01	: : 0.01	
e : 0.31	d : 0.28	[ : 0.10	f : 0.08	g : 0.05	! : 0.05	b : 0.02	c : 0.02	$ : 0.01	" : 0.01	
e : 0.30	d : 0.27	c : 0.23	f : 0.08	g : 0.05	[ : 0.02	! : 0.01	
e : 0.30	d : 0.27	c : 0.23	f : 0.08	b : 0.04	g : 0.02	[ : 0.01	! : 0.01	
e : 0.30	d : 0.27	c : 0.23	f : 0.08	b : 0.04	a : 0.02	g : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.30	d : 0.27	c : 0.23	f : 0.08	b : 0.04	a : 0.02	g : 0.02	
e : 0.30	d : 0.27	c : 0.23	f : 0.08	g : 0.04	b : 0.04	2 : 0.01	
e : 0.31	d : 0.28	c : 0.23	f : 0.08	g : 0.04	] : 0.01	2 : 0.01	
e : 0.31	d : 0.28	] : 0.13	f : 0.10	g : 0.05	2 : 0.04	4 : 0.02	c : 0.01	: : 0.01	
e : 0.34	2 : 0.11	f : 0.11	4 : 0.07	] : 0.07	g : 0.05	b : 0.05	c : 0.04	d : 0.04	a : 0.01	0 : 0.01	: : 0.01	H : 0.01	5 : 0.01	

#score	976.2970170061614
#seq	69
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_UTR_m1_run2.txt

#BEAR
dd[bb[bb!!acccmmmmccc]a22bbbbdd	chr3:47628603-47628832(-)$1	229	194	225	11.1250
g####cccddddoooooodddd4444ccc44	chr7:100882903-100883125(-)$1	222	182	213	11.4733
bb[ggggggg[ccclllccc333ggggggg2	chr5:10280227-10280472(-)$1	245	187	218	12.9534
dddd!!ccc[ddddmmmmdddd22ccc333d	chr6:170886255-170886525(-)$1	270	3	34	12.4079
ggggggg"""ddddmmmmdddd]ggggggg2	chr19:1980414-1980689(+)$1	275	199	230	13.4617
::ggggggg!!cccmmmmccc22gggggggf	chr12:56537994-56538260(+)$1	266	40	71	12.4153
ffff[gggggggoooooogggggggffffff	chr20:52835756-52836034(+)$1	278	228	259	10.1703
====!!bb!!a[bbmmmmbba22bb333===	chr20:60962798-60963012(+)$1	214	80	111	12.1823
bb[===========mmmm===========bb	chr7:99690421-99690664(-)$1	243	185	216	13.3551
cc[bb[==========lll==========]b	chr1:180166980-180167241(+)$1	261	33	64	11.8746
ggggggg!!eeeeemmmmeeeee333ggggg	chr13:27830471-27830691(+)$1	220	163	194	11.8566
gggggccc"""cccnnnnncccccc]ggggg	chr11:57175149-57175407(-)$1	258	87	118	11.3122
ee[dddd[ccccccmmmmccc22ccc22ddd	chrX:69385980-69386269(+)$1	289	27	58	11.3526
ffffff[a[cccooooooccc]a]ffffffe	chr9:100777850-100778061(+)$1	211	78	109	10.8043
!ggggggg!!cccnnnnnccc22ggggggg6	chrX:77082297-77082541(-)$1	244	65	96	12.5846
ggggggg[a[ddddmmmmdddda]ggggggg	chr1:235274881-235275103(-)$1	222	92	123	13.2953
===========ddddllldddd333======	chr16:67471916-67472158(-)$1	242	96	127	14.4557
b[gggggggcccccclllccc22ccc]gggg	chr16:88718412-88718650(-)$1	238	171	202	12.7614
==========cccnnnnnccc]=========	chr19:49464891-49465149(+)$1	258	129	160	13.7256
===========ddddllldddd333======	chr1:205683199-205683443(-)$1	244	60	91	14.4557
bbccc[bb[cccooooooccc]bb]ccc333	chr2:232037171-232037471(+)$1	300	185	216	11.0553
"iiiiiiiii[ccclllccc]iiiiiiiiid	chr7:6063992-6064237(-)$1	245	18	49	13.0629
iiiii[ddddddddmmmmdddd333ddddii	chr11:47487976-47488230(-)$1	254	118	149	12.3213
$$$ffffff!!cccmmmmccc22ffffffcc	chr3:196074511-196074799(-)$1	288	25	56	11.2803
$ggggggg"""cccmmmmccc333ggggggg	chr11:33731404-33731688(-)$1	284	92	123	14.9131
::============mmmm============:	chr2:162267804-162268053(+)$1	249	63	94	11.6232
!!ffffff!!ddddmmmmdddd22ffffffc	chr15:83207530-83207743(-)$1	213	100	131	11.7728
cc[dddd!!cccooooooccc333dddd333	chrX:25014877-25015131(+)$1	254	34	65	12.2732
eee!!ccc!!ddddmmmmddddccc22eeee	chr5:139622977-139623237(+)$1	260	219	250	11.1065
ffff!!bb"""cccmmmmccc333bb22fff	chr19:49611420-49611730(+)$1	310	140	171	12.4313
ggggggggggggggmmmmggggggg4444gg	chr8:110355696-110355942(+)$1	246	34	65	11.6945
iiiii"""ccc[ccclllcccccciiiiiii	chr11:62382807-62383056(-)$1	249	50	81	12.5205
cc[===========mmmm===========]c	chr22:29696151-29696371(+)$1	220	78	109	14.5182
c"""==========nnnnn==========66	chr16:27236230-27236508(-)$1	278	216	247	11.4457
::ggggggg!!cccmmmmccc22gggggggd	chr12:56537791-56538084(+)$1	293	243	274	12.4252
cc[a!!ddddcccnnnnnccc4444dddd]a	chr1:249144288-249144654(-)$1	366	33	64	10.5073
ccciiiiiiiiiooooooiiiiiiiiiccc[	chr16:4393107-4393394(-)$1	287	145	176	12.0613
"dddd"""ddddoooooodddd333dddd33	chr3:38022522-38022822(+)$1	300	189	220	11.1878
ee[ggggggg[cccmmmmccc]ggggggg]e	chr19:3062289-3062520(-)$1	231	34	65	13.4828
iiiiiiiiia!!bbmmmmbb22a]iiiiiii	chr7:5646105-5646367(+)$1	262	174	205	12.5550
:iiiiiiiii[ccclllccc22iiiiiiiii	chr21:34950196-34950408(-)$1	212	24	55	12.3770
gggg$$$$$cccooooooccc22ggggggg]	chr3:50367777-50368013(-)$1	236	80	111	12.3411
ccc[bb[ccccccmmmmccc333ccc]bb]c	chr6:158613110-158613330(+)$1	220	136	167	11.0734
[bb"""ccc[ddddmmmmdddd]ccc]bb]e	chr15:75095223-75095484(+)$1	261	61	92	11.6741
eeeeeiiiiiiiiimmmmiiiiiiiii22ee	chr2:47710037-47710331(+)$1	294	169	200	11.3008
dddd!!cccddddoooooodddd333ccc]d	chr6:33240304-33240523(+)$1	219	3	34	10.8911
======!!ccc[bblllbb]ccc22======	chr12:53691742-53691957(+)$1	215	171	202	11.4474
c!!ggggggg[cccmmmmcccggggggg22c	chr11:118963972-118964227(+)$1	255	204	235	13.0598
eee[ccc[a[ddddmmmmddddaccc]eeee	chr1:24114141-24114406(+)$1	265	136	167	11.3811
d"""bbbb"""cccmmmmccc22bb]bb444	chr17:80445763-80446011(+)$1	248	48	79	11.7406
dd[bb[a"""ddddllldddd333a]bb]dd	chr11:14526563-14526811(-)$1	248	51	82	11.6429
==========ddddmmmmdddd22=======	chr6:133135648-133135852(+)$1	204	150	181	15.0034
iiiiiiiiiddddnnnnndddd]iiiiiiii	chr8:124025946-124026221(-)$1	275	34	65	12.2684
cc[ccc!!ddddoooooodddd22ccc]ccc	chr12:69995011-69995327(+)$1	316	125	156	11.8576
!!ccc[bb!!ddddmmmmdddd333bbccc2	chr19:50363262-50363495(+)$1	233	78	109	12.6933

#otherMatches

#Seq PSSM
UAGCCAGGGAGUGGAAUUUCGUCAACCGGUA	chr3:47628603-47628832(-)$1	229	194	225	11.1250
CAUCAUGUGCUUUGGGAUGAGUGUAAAUAAA	chr7:100882903-100883125(-)$1	222	182	213	11.4733
ugaggucaggaguuugagaccagccuggcca	chr5:10280227-10280472(-)$1	245	187	218	12.9534
acacagugucuacuuauuagugaaacaaaag	chr6:170886255-170886525(-)$1	270	3	34	12.4079
CCCUCGAUCCAAAGGCCGUUUUCUCGAGGGG	chr19:1980414-1980689(+)$1	275	199	230	13.4617
CUUCUUCCCUACCACACAUGGGUGGGAAGGU	chr12:56537994-56538260(+)$1	266	40	71	12.4153
GUUGCAAUUUUCACAUAAGAAAAUUUAACAG	chr20:52835756-52836034(+)$1	278	228	259	10.1703
GACCCUUCUUCUCUUUCUAGGUUGACAAGGU	chr20:60962798-60963012(+)$1	214	80	111	12.1823
UGAGGGGAAGGAGGAGCCCCUCUUUCUCCCA	chr7:99690421-99690664(-)$1	243	185	216	13.3551
AAGCUAGGGAGGGGAGUGUCUUCUCUCUCCA	chr1:180166980-180167241(+)$1	261	33	64	11.8746
ACCUAUUCCCUAUGAAUUCAUGGCAUAAUAG	chr13:27830471-27830691(+)$1	220	163	194	11.8566
UUCUGGUAUAUCGGGAAUGCCGUACUUGGAA	chr11:57175149-57175407(-)$1	258	87	118	11.3122
GAUAUGAACCAGCAGUCUUGUUUUGGCAUCA	chrX:69385980-69386269(+)$1	289	27	58	11.3526
ACAAAAUUGUAAGCGUUGUUAGGUUUUUGUG	chr9:100777850-100778061(+)$1	211	78	109	10.8043
UCAGAAGAAAUAUUUUAUGUGGGUUUUUUGU	chrX:77082297-77082541(-)$1	244	65	96	12.5846
AGAAUGUACACUUUUUUAGAGGGCACAUUUU	chr1:235274881-235275103(-)$1	222	92	123	13.2953
uucuguGGGUCGCUCCCAGAGCCAUGGCCCA	chr16:67471916-67472158(-)$1	242	96	127	14.4557
UGCUGAGACCCUGCCCCCGGCCCAGGUGUCU	chr16:88718412-88718650(-)$1	238	171	202	12.7614
GUCUUGAGGGGGUAAUAAACCUCCUUCGGGA	chr19:49464891-49465149(+)$1	258	129	160	13.7256
UGGGGUGUGGGGGUAUAGUACUCAGCUUAUG	chr1:205683199-205683443(-)$1	244	60	91	14.4557
CUGACCUGAAGAACCCUGUCUCCAAGUCUUU	chr2:232037171-232037471(+)$1	300	185	216	11.0553
AUUUAGUAAGCCUUUACAAGACUUGUUAAAG	chr7:6063992-6064237(-)$1	245	18	49	13.0629
AACUUUACAUUUUGGAGACAAACCUGUGUGA	chr11:47487976-47488230(-)$1	254	118	149	12.3213
CCCAGUUGCUUUAUAUUAAUACUGCAACUUG	chr3:196074511-196074799(-)$1	288	25	56	11.2803
GCUUGAUAUUUUCCAAAUGGAUCCUGUUGGG	chr11:33731404-33731688(-)$1	284	92	123	14.9131
UCCAGUGUUUAGCAGCUAUGUUGGAUACUGU	chr2:162267804-162268053(+)$1	249	63	94	11.6232
UUAUGUUCCUGAGGUAAACUUUCUGGAUAUU	chr15:83207530-83207743(-)$1	213	100	131	11.7728
UCUUUGGCAGCAGCAAAAUGUAUUUCAGUAU	chrX:25014877-25015131(+)$1	254	34	65	12.2732
UUUCUUAUUGAUCUUUAAAGAUGUGCUAAAU	chr5:139622977-139623237(+)$1	260	219	250	11.1065
cccgaggugggggcgguggccaggacAACGG	chr19:49611420-49611730(+)$1	310	140	171	12.4313
UUGUGGUUUUAUUUCUGAAAGUAAAACUUGC	chr8:110355696-110355942(+)$1	246	34	65	11.6945
AGCCUGCCGUGUGGCACUGCCCACAGGCUGG	chr11:62382807-62383056(-)$1	249	50	81	12.5205
UAUUUAUAAUGUUGGCCACAACAUUAUGAUU	chr22:29696151-29696371(+)$1	220	78	109	14.5182
GUGUGUGAGGCUCCGUGUUGGGGCCUUGCCU	chr16:27236230-27236508(-)$1	278	216	247	11.4457
CUUCUUCCCUACCACACAUGGGUGGGAAGGU	chr12:56537791-56538084(+)$1	293	243	274	12.4252
UGUGAAUUCUGCGGCAAGCGCUUUGAGAAGC	chr1:249144288-249144654(-)$1	366	33	64	10.5073
UGGGCAGGGCCUUUGCACGGGCCUUGCGGCA	chr16:4393107-4393394(-)$1	287	145	176	12.0613
CAGAGCAGCUGACCCAACUCAGAAUCUCUUU	chr3:38022522-38022822(+)$1	300	189	220	11.1878
GCGUCGCCGCCAUUAGACAAUAGCggugggg	chr19:3062289-3062520(-)$1	231	34	65	13.4828
AGCCCCAGGCCGGCCUGUGUGUGUCUUGGGG	chr7:5646105-5646367(+)$1	262	174	205	12.5550
UGUAUAUUGAGCAGAAACUGAAUUAAUAUGC	chr21:34950196-34950408(-)$1	212	24	55	12.3770
GCCUGUGGAAUGAGUGUGCAUGGAGGCCCUC	chr3:50367777-50368013(-)$1	236	80	111	12.3411
CUCAAUAUCUUAGGUGACUGAUUAGACAUAG	chr6:158613110-158613330(+)$1	220	136	167	11.0734
GGGACCGGGCCCCUCUCUAGGGACCCCUCGC	chr15:75095223-75095484(+)$1	261	61	92	11.6741
CUUAAUAAGAUAUUUAGUAAUAUUUUACUUU	chr2:47710037-47710331(+)$1	294	169	200	11.3008
AGGCUUAACCUUUUUGUAUGAAGUUCGUUUG	chr6:33240304-33240523(+)$1	219	3	34	10.8911
AGAAGCACGCCAUGAAACAGGGUAAGUUUUU	chr12:53691742-53691957(+)$1	215	171	202	11.4474
UGGGGGCUUCAUCUCUUUAGAGAAGUCCAAG	chr11:118963972-118964227(+)$1	255	204	235	13.0598
UCCGGAUUGUGUUAGUAGUAGCCAUCAGGAG	chr1:24114141-24114406(+)$1	265	136	167	11.3811
CAAGCCCAGACUCCAGACGGACAUGCGGAUA	chr17:80445763-80446011(+)$1	248	48	79	11.7406
CUGAUGAACCAAUGGAACAUUAAGUGAUAAG	chr11:14526563-14526811(-)$1	248	51	82	11.6429
GCUCGUUGCGUUCUUGCUGGGAUUCGUGACG	chr6:133135648-133135852(+)$1	204	150	181	15.0034
GAAAUGAGAGUUGGCAAACAACUUCUCAUUU	chr8:124025946-124026221(-)$1	275	34	65	12.2684
GUUUCUAGCAAAGUUGUGUUUGAAAGAUACU	chr12:69995011-69995327(+)$1	316	125	156	11.8576
CCAUGACCAGGGCAACUUUGUCAACGGCAUC	chr19:50363262-50363495(+)$1	233	78	109	12.6933

#DB
((.((.((..((((....))).)..))))))	chr3:47628603-47628832(-)$1	1	194	225	11.1250
(....(((((((......))))....)))..	chr7:100882903-100883125(-)$1	1	182	213	11.4733
((.(((((((.(((...)))...))))))).	chr5:10280227-10280472(-)$1	1	187	218	12.9534
((((..(((.((((....))))..)))...)	chr6:170886255-170886525(-)$1	1	3	34	12.4079
(((((((...((((....)))).))))))).	chr19:1980414-1980689(+)$1	1	199	230	13.4617
..(((((((..(((....)))..)))))))(	chr12:56537994-56538260(+)$1	1	40	71	12.4153
((((.(((((((......)))))))))))))	chr20:52835756-52836034(+)$1	1	228	259	10.1703
((((..((..(.((....)))..))...)))	chr20:60962798-60963012(+)$1	1	80	111	12.1823
((.(((((((((((....)))))))))))))	chr7:99690421-99690664(-)$1	1	185	216	13.3551
((.((.((((((((((...)))))))))).)	chr1:180166980-180167241(+)$1	1	33	64	11.8746
(((((((..(((((....)))))...)))))	chr13:27830471-27830691(+)$1	1	163	194	11.8566
((((((((...(((.....)))))).)))))	chr11:57175149-57175407(-)$1	1	87	118	11.3122
((.((((.((((((....)))..)))..)))	chrX:69385980-69386269(+)$1	1	27	58	11.3526
((((((.(.(((......))).).))))))(	chr9:100777850-100778061(+)$1	1	78	109	10.8043
.(((((((..(((.....)))..))))))).	chrX:77082297-77082541(-)$1	1	65	96	12.5846
(((((((.(.((((....))))).)))))))	chr1:235274881-235275103(-)$1	1	92	123	13.2953
(((((((((((((((...))))...))))))	chr16:67471916-67472158(-)$1	1	96	127	14.4557
(.(((((((((((((...)))..))).))))	chr16:88718412-88718650(-)$1	1	171	202	12.7614
(((((((((((((.....))).)))))))))	chr19:49464891-49465149(+)$1	1	129	160	13.7256
(((((((((((((((...))))...))))))	chr1:205683199-205683443(-)$1	1	60	91	14.4557
(((((.((.(((......))).)).)))...	chr2:232037171-232037471(+)$1	1	185	216	11.0553
.(((((((((.(((...))).))))))))))	chr7:6063992-6064237(-)$1	1	18	49	13.0629
(((((.((((((((....))))...))))))	chr11:47487976-47488230(-)$1	1	118	149	12.3213
...((((((..(((....)))..))))))))	chr3:196074511-196074799(-)$1	1	25	56	11.2803
.(((((((...(((....)))...)))))))	chr11:33731404-33731688(-)$1	1	92	123	14.9131
..((((((((((((....)))))))))))).	chr2:162267804-162268053(+)$1	1	63	94	11.6232
..((((((..((((....))))..)))))))	chr15:83207530-83207743(-)$1	1	100	131	11.7728
((.((((..(((......)))...))))...	chrX:25014877-25015131(+)$1	1	34	65	12.2732
(((..(((..((((....)))))))..))))	chr5:139622977-139623237(+)$1	1	219	250	11.1065
((((..((...(((....)))...))..)))	chr19:49611420-49611730(+)$1	1	140	171	12.4313
((((((((((((((....)))))))....))	chr8:110355696-110355942(+)$1	1	34	65	11.6945
(((((...(((.(((...)))))))))))))	chr11:62382807-62383056(-)$1	1	50	81	12.5205
((.(((((((((((....))))))))))).)	chr22:29696151-29696371(+)$1	1	78	109	14.5182
(...((((((((((.....))))))))))..	chr16:27236230-27236508(-)$1	1	216	247	11.4457
..(((((((..(((....)))..)))))))(	chr12:56537791-56538084(+)$1	1	243	274	12.4252
((.(..(((((((.....)))....)))).)	chr1:249144288-249144654(-)$1	1	33	64	10.5073
)))(((((((((......)))))))))(((.	chr16:4393107-4393394(-)$1	1	145	176	12.0613
.((((...((((......))))...))))..	chr3:38022522-38022822(+)$1	1	189	220	11.1878
((.(((((((.(((....))).))))))).)	chr19:3062289-3062520(-)$1	1	34	65	13.4828
((((((((((..((....))..).)))))))	chr7:5646105-5646367(+)$1	1	174	205	12.5550
.(((((((((.(((...)))..)))))))))	chr21:34950196-34950408(-)$1	1	24	55	12.3770
((((.....(((......)))..))))))).	chr3:50367777-50368013(-)$1	1	80	111	12.3411
(((.((.((((((....)))...))).)).)	chr6:158613110-158613330(+)$1	1	136	167	11.0734
.((...(((.((((....)))).))).)).)	chr15:75095223-75095484(+)$1	1	61	92	11.6741
((((((((((((((....)))))))))..))	chr2:47710037-47710331(+)$1	1	169	200	11.3008
((((..(((((((......))))...))).)	chr6:33240304-33240523(+)$1	1	3	34	10.8911
((((((..(((.((...)).)))..))))))	chr12:53691742-53691957(+)$1	1	171	202	11.4474
(..(((((((.(((....))))))))))..)	chr11:118963972-118964227(+)$1	1	204	235	13.0598
(((.(((.(.((((....)))))))).))))	chr1:24114141-24114406(+)$1	1	136	167	11.3811
(...((((...(((....)))..)).))...	chr17:80445763-80446011(+)$1	1	48	79	11.7406
((.((.(...((((...))))...).)).))	chr11:14526563-14526811(-)$1	1	51	82	11.6429
((((((((((((((....))))..)))))))	chr6:133135648-133135852(+)$1	1	150	181	15.0034
(((((((((((((.....)))).))))))))	chr8:124025946-124026221(-)$1	1	34	65	12.2684
((.(((..((((......))))..))).)))	chr12:69995011-69995327(+)$1	1	125	156	11.8576
..(((.((..((((....))))...))))).	chr19:50363262-50363495(+)$1	1	78	109	12.6933

#PSSM
c : 0.16	g : 0.12	= : 0.10	d : 0.09	e : 0.09	b : 0.07	: : 0.07	i : 0.07	f : 0.05	! : 0.05	" : 0.03	$ : 0.03	[ : 0.01	
g : 0.14	c : 0.12	= : 0.10	i : 0.10	d : 0.09	e : 0.09	b : 0.07	: : 0.05	f : 0.05	! : 0.05	" : 0.03	# : 0.01	[ : 0.01	$ : 0.01	
[ : 0.20	g : 0.20	= : 0.12	i : 0.10	f : 0.07	c : 0.07	d : 0.05	e : 0.05	" : 0.03	# : 0.01	$ : 0.01	b : 0.01	! : 0.01	
g : 0.25	= : 0.16	i : 0.12	d : 0.09	f : 0.09	b : 0.05	c : 0.05	" : 0.05	[ : 0.03	# : 0.01	! : 0.01	a : 0.01	e : 0.01	
g : 0.23	= : 0.16	i : 0.12	! : 0.10	b : 0.09	c : 0.07	d : 0.05	f : 0.05	# : 0.01	[ : 0.01	$ : 0.01	" : 0.01	e : 0.01	
g : 0.23	= : 0.16	[ : 0.10	i : 0.10	c : 0.09	! : 0.09	f : 0.05	" : 0.05	d : 0.03	b : 0.03	$ : 0.01	
g : 0.23	= : 0.16	c : 0.12	b : 0.10	i : 0.10	d : 0.07	[ : 0.03	f : 0.03	" : 0.03	! : 0.03	$ : 0.01	a : 0.01	
g : 0.18	= : 0.16	c : 0.12	b : 0.10	i : 0.10	" : 0.07	! : 0.07	[ : 0.05	d : 0.03	f : 0.03	a : 0.01	$ : 0.01	
= : 0.16	! : 0.14	g : 0.14	c : 0.12	" : 0.10	i : 0.10	d : 0.09	[ : 0.03	a : 0.03	f : 0.01	$ : 0.01	
! : 0.16	= : 0.16	c : 0.16	d : 0.12	" : 0.10	g : 0.09	[ : 0.07	i : 0.07	e : 0.01	a : 0.01	
d : 0.29	c : 0.21	= : 0.12	[ : 0.09	! : 0.07	" : 0.07	a : 0.03	g : 0.03	i : 0.03	e : 0.01	
c : 0.41	d : 0.32	= : 0.09	[ : 0.05	g : 0.03	i : 0.03	e : 0.01	! : 0.01	
c : 0.36	d : 0.27	o : 0.16	= : 0.09	b : 0.05	e : 0.01	g : 0.01	i : 0.01	
c : 0.29	d : 0.23	o : 0.18	= : 0.09	n : 0.07	b : 0.05	e : 0.01	g : 0.01	m : 0.01	i : 0.01	
m : 0.52	o : 0.18	n : 0.10	l : 0.09	d : 0.03	c : 0.03	= : 0.01	
m : 0.52	o : 0.18	l : 0.16	n : 0.10	= : 0.01	
m : 0.52	o : 0.18	l : 0.18	n : 0.10	
m : 0.50	o : 0.18	n : 0.10	l : 0.09	c : 0.07	b : 0.01	d : 0.01	
c : 0.41	d : 0.30	b : 0.05	= : 0.05	g : 0.03	n : 0.03	i : 0.03	l : 0.01	e : 0.01	o : 0.01	
c : 0.43	d : 0.32	= : 0.09	g : 0.03	b : 0.03	i : 0.03	e : 0.01	] : 0.01	
c : 0.38	d : 0.32	= : 0.09	3 : 0.03	g : 0.03	i : 0.03	2 : 0.03	a : 0.01	e : 0.01	] : 0.01	
d : 0.30	2 : 0.20	3 : 0.10	] : 0.09	= : 0.09	g : 0.05	c : 0.05	i : 0.05	e : 0.01	4 : 0.01	
2 : 0.23	3 : 0.20	= : 0.10	a : 0.09	g : 0.07	c : 0.07	i : 0.07	] : 0.05	4 : 0.03	e : 0.01	b : 0.01	d : 0.01	
3 : 0.20	g : 0.18	c : 0.14	2 : 0.10	= : 0.10	i : 0.09	b : 0.05	] : 0.05	4 : 0.03	f : 0.01	
g : 0.21	c : 0.16	= : 0.12	3 : 0.12	i : 0.12	b : 0.05	f : 0.05	2 : 0.03	4 : 0.03	] : 0.01	d : 0.01	a : 0.01	
g : 0.18	= : 0.18	c : 0.14	i : 0.12	f : 0.07	d : 0.07	b : 0.05	3 : 0.05	] : 0.05	4 : 0.03	2 : 0.01	
g : 0.21	= : 0.18	i : 0.12	c : 0.09	b : 0.07	f : 0.07	] : 0.07	d : 0.07	2 : 0.05	3 : 0.01	4 : 0.01	
g : 0.23	= : 0.18	b : 0.09	c : 0.09	i : 0.09	f : 0.07	d : 0.07	2 : 0.05	3 : 0.03	e : 0.03	4 : 0.01	] : 0.01	
g : 0.21	= : 0.20	c : 0.09	f : 0.09	i : 0.09	d : 0.07	b : 0.05	3 : 0.05	e : 0.03	4 : 0.03	2 : 0.03	] : 0.01	
g : 0.21	= : 0.12	] : 0.12	i : 0.10	3 : 0.07	f : 0.07	c : 0.07	d : 0.05	e : 0.05	4 : 0.03	b : 0.01	6 : 0.01	2 : 0.01	
d : 0.12	= : 0.10	g : 0.10	e : 0.10	c : 0.10	i : 0.09	2 : 0.05	f : 0.05	3 : 0.05	4 : 0.03	b : 0.03	6 : 0.03	: : 0.01	a : 0.01	[ : 0.01	] : 0.01	

#score	673.0162421638987
#seq	55
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_UTR_m3_run1.txt

#BEAR
eeeeeqqqqqqqqeeeeeC	chr1:7904354-7904626(+)$1	272	196	215	13.4570
eeeeeqqqqqqqqeeeee:	chr1:155882761-155883037(-)$1	276	178	197	13.6603
!!bbaqqqqqqqqa]bb44	chr11:57584640-57584882(+)$1	242	199	218	13.0860
d[cccqqqqqqqqccc]dd	chr17:7417500-7417718(+)$1	218	141	160	14.1407
eeeeeqqqqqqqqeeeeef	chr16:18802936-18803184(-)$1	248	118	137	14.2435
eeeeeqqqqqqqqeeeee:	chr19:19010228-19010540(-)$1	312	0	19	13.6603
c[cccqqqqqqqqccc]cc	chr15:44706880-44707130(+)$1	250	120	139	14.4474
gggggqqqqqqqqgggggg	chr11:70230268-70230545(+)$1	277	189	208	14.2718
eeeeeqqqqqqqqeeeee6	chr20:62521910-62522182(+)$1	272	173	192	14.0444
!ddddqqqqqqqqdddd]e	chr1:184659710-184659960(-)$1	250	92	111	14.2012
ggg[aqqqqqqqqa]gggg	chr1:182856653-182856931(+)$1	278	224	243	14.0482
gggggqqqqqqqqgggggg	chr12:95387853-95388138(-)$1	285	202	221	14.2718
!!cccqqqqqqqqccc22e	chr2:37070848-37071177(-)$1	329	23	42	14.3461
fffffqqqqqqqqffffff	chr3:5222202-5222450(+)$1	248	88	107	13.2115
cccbbqqqqqqqqbb]ccc	chr12:54635338-54635607(-)$1	269	85	104	13.1068
!!cccqqqqqqqqccc22c	chr3:20026070-20026343(+)$1	273	104	123	14.4645
++cccqqqqqqqqccc>>>	chr12:49412891-49413115(-)$1	224	50	69	12.4118
Dddddqqqqqqqqddddff	chr2:65537909-65538156(-)$1	247	144	163	12.7294
iiiiiqqqqqqqqiiiiii	chr11:111934023-111934275(+)$1	252	57	76	14.1105
""cccqqqqqqqqccc444	chr8:12579859-12580095(-)$1	236	206	225	14.4390
[ddddqqqqqqqqdddd]f	chr2:87004589-87004858(+)$1	269	18	37	14.1798
eeeeeqqqqqqqqeeeeea	chr2:112874777-112875048(+)$1	271	74	93	14.3209
ee[bbqqqqqqqqbb]eee	chr6:10756842-10757118(+)$1	276	55	74	13.2780
dddddqqqqqqqqdddd]d	chr12:108962967-108963191(+)$1	224	109	128	13.9128
gggggqqqqqqqqgggggg	chr14:73586516-73586785(+)$1	269	98	117	14.2718
!!cccqqqqqqqqccc22e	chr18:61056850-61057143(-)$1	293	180	199	14.3461
!!abbqqqqqqqqbb]a33	chr1:161933289-161933590(+)$1	301	176	195	13.6427
cddddqqqqqqqqdddd::	chr6:33420709-33420945(+)$1	236	68	87	12.4228
fffffqqqqqqqqffffff	chr1:179813404-179813653(-)$1	249	1	20	13.2115
cccccqqqqqqqqccc]cc	chr11:2418008-2418328(+)$1	320	23	42	14.2797
!ddddqqqqqqqqdddd22	chr15:44096694-44096987(-)$1	293	261	280	14.0854
iiiiiqqqqqqqqiiiiii	chr16:67134526-67134801(+)$1	275	245	264	14.1105
"""bbqqqqqqqqbbiiii	chr4:73940684-73940939(-)$1	255	123	142	13.1882
fff[aqqqqqqqqa]ffff	chr1:87571182-87571472(+)$1	290	131	150	13.3374
gddddqqqqqqqqdddd::	chr1:180082243-180082539(+)$1	296	206	225	12.4944
c[cccqqqqqqqqccc]cc	chr1:202300746-202300971(-)$1	225	171	190	14.4474
ddcccqqqqqqqqccc]dd	chr12:110475621-110475906(+)$1	285	117	136	14.0246
iiiiiqqqqqqqqiiiiii	chr1:46083689-46083956(+)$1	267	244	263	14.1105
dddbbqqqqqqqqbb]ddd	chr12:46299653-46299885(+)$1	232	136	155	12.8666
fffffqqqqqqqqffffff	chr12:6640503-6640804(+)$1	301	65	84	13.2115
eeeeeqqqqqqqqeeeee:	chr2:8824173-8824461(+)$1	288	178	197	13.6603
eeeeeqqqqqqqqeeeee:	chr7:117831985-117832241(+)$1	256	42	61	13.6603
fffffqqqqqqqqffffff	chr3:142754792-142755037(+)$1	245	19	38	13.2115
eeeeeqqqqqqqqeeeee]	chr12:118588040-118588304(-)$1	264	24	43	14.4127
!ddddqqqqqqqqdddd33	chr12:108962783-108963096(+)$1	313	169	188	14.4960
eeeeeqqqqqqqqeeeee:	chr21:15857877-15858132(-)$1	255	37	56	13.6603
f[cccqqqqqqqqccc]ff	chr20:57608608-57608853(-)$1	245	83	102	14.3038
:ddddqqqqqqqqddddFF	chr12:46299477-46299740(+)$1	263	167	186	12.3954
gggggqqqqqqqqgggggg	chr14:93694396-93694638(+)$1	242	73	92	14.2718
!!cccqqqqqqqqccc22c	chr19:16243238-16243518(+)$1	280	256	275	14.4645
e[cccqqqqqqqqccceee	chr19:47222849-47223097(-)$1	248	97	116	14.4597
eeeeeqqqqqqqqeeeee:	chr10:81074212-81074453(+)$1	241	58	77	13.6603
!ddddqqqqqqqqdddd]d	chr2:97525463-97525819(-)$1	356	126	145	14.1688
iiiiiqqqqqqqqiiiiii	chr2:182794806-182795050(+)$1	244	191	210	14.1105
fffffqqqqqqqqffffff	chr9:5774868-5775156(+)$1	288	149	168	13.2115
fddddqqqqqqqqdddd33	chr15:65410853-65411112(-)$1	259	231	250	14.2534
gggggqqqqqqqqgggggg	chr8:41786959-41787192(-)$1	233	163	182	14.2718
gggggqqqqqqqqgggggg	chr11:63527155-63527433(+)$1	278	136	155	14.2718
""cccqqqqqqqqccc444	chr8:48973729-48974027(+)$1	298	22	41	14.4390
dd!!aqqqqqqqqa22ddd	chr16:604397-604643(+)$1	246	225	244	12.9042
eeeeeqqqqqqqqeeeee:	chr6:43304414-43304654(-)$1	240	201	220	13.6603
gggggqqqqqqqqgggggg	chr2:152332225-152332500(+)$1	275	237	256	14.2718
dddddqqqqqqqqdddd::	chr3:193856071-193856324(+)$1	253	43	62	12.3581
eeeeeqqqqqqqqeeeee]	chr2:223806738-223807019(+)$1	281	196	215	14.4127
gg[bbqqqqqqqqbb]ggg	chr16:87439836-87440114(-)$1	278	119	138	13.3498
eeeeeqqqqqqqqeeeee2	chr6:153291684-153291920(-)$1	236	22	41	14.2383
!ddddqqqqqqqqdddd22	chr15:40845298-40845560(-)$1	262	137	156	14.0854

#otherMatches

#Seq PSSM
ACUGUAAAUAAAAACAGUA	chr1:7904354-7904626(+)$1	272	196	215	13.4570
UUAUAAAUAAAUCUAUAAA	chr1:155882761-155883037(-)$1	276	178	197	13.6603
UUGCCUCUUCUUUGUGCCU	chr11:57584640-57584882(+)$1	242	199	218	13.0860
GGAUCCCGUUUCUGAUGCA	chr17:7417500-7417718(+)$1	218	141	160	14.1407
UGCAGUUUUAAUCCUGUAU	chr16:18802936-18803184(-)$1	248	118	137	14.2435
UAAAGGAGAACGACUUUGA	chr19:19010228-19010540(-)$1	312	0	19	13.6603
CAAGCUUAUAUUUGCUAGA	chr15:44706880-44707130(+)$1	250	120	139	14.4474
UAUUGCUUUCUUUCAAUAA	chr11:70230268-70230545(+)$1	277	189	208	14.2718
GCCUCUUCCAGUUGAGGUG	chr20:62521910-62522182(+)$1	272	173	192	14.0444
CCGUAUAUUUUCUUAUGAU	chr1:184659710-184659960(-)$1	250	92	111	14.2012
CACCGAAUACUUGCCGUGU	chr1:182856653-182856931(+)$1	278	224	243	14.0482
GACAACAuuuuauuugucu	chr12:95387853-95388138(-)$1	285	202	221	14.2718
UCCUCCAGCUGGUGAGCCC	chr2:37070848-37071177(-)$1	329	23	42	14.3461
GUGCAUUAACCUCUGCAUG	chr3:5222202-5222450(+)$1	248	88	107	13.2115
UGUCAUUUCUCUUUGUACA	chr12:54635338-54635607(-)$1	269	85	104	13.1068
UUAUUUUAAAUUCGAUCUU	chr3:20026070-20026343(+)$1	273	104	123	14.4645
CCAGGACCCUCCCCCUUUU	chr12:49412891-49413115(-)$1	224	50	69	12.4118
CGUGUAAAUAUAAACACAU	chr2:65537909-65538156(-)$1	247	144	163	12.7294
AUUGUAAAUGAACAUAAUG	chr11:111934023-111934275(+)$1	252	57	76	14.1105
AACACUCAAAACUGUGAAA	chr8:12579859-12580095(-)$1	236	206	225	14.4390
UUUGCUCAUGACUGCAGUA	chr2:87004589-87004858(+)$1	269	18	37	14.1798
UUUAGAAUAAUAAUUAAAG	chr2:112874777-112875048(+)$1	271	74	93	14.3209
GGAAAAUCAGUUGUUACCA	chr6:10756842-10757118(+)$1	276	55	74	13.2780
UUGUUGUACAUAAAACAGA	chr12:108962967-108963191(+)$1	224	109	128	13.9128
UUUUUUUUUUUGUAGAAAA	chr14:73586516-73586785(+)$1	269	98	117	14.2718
UCCUUCACCUUUUAAGUUC	chr18:61056850-61057143(-)$1	293	180	199	14.3461
AGGCCAGUCACCAGGACAG	chr1:161933289-161933590(+)$1	301	176	195	13.6427
GGUGUUUCUCUGUACAUAG	chr6:33420709-33420945(+)$1	236	68	87	12.4228
UCUGUUCCAUUAUAUAGAC	chr1:179813404-179813653(-)$1	249	1	20	13.2115
AGAUCUUCGAGAUGAUCCU	chr11:2418008-2418328(+)$1	320	23	42	14.2797
AUUGCCUAUUAAAGUAAAA	chr15:44096694-44096987(-)$1	293	261	280	14.0854
AAGUUAUUGAUGCAAUUUG	chr16:67134526-67134801(+)$1	275	245	264	14.1105
CCUUGUAUAUUAUCAGUGA	chr4:73940684-73940939(-)$1	255	123	142	13.1882
UUUACAAAACAAGGAAAAU	chr1:87571182-87571472(+)$1	290	131	150	13.3374
UUUGGACCUAAAACCAGUU	chr1:180082243-180082539(+)$1	296	206	225	12.4944
AGUCAUUUAAUGUUGAGUA	chr1:202300746-202300971(-)$1	225	171	190	14.4474
CUUUUAUAUAUAAGAGCAG	chr12:110475621-110475906(+)$1	285	117	136	14.0246
UGGUUUUUUUCUUAAUUAU	chr1:46083689-46083956(+)$1	267	244	263	14.1105
AUGGAAUAAUAUAUCUCAU	chr12:46299653-46299885(+)$1	232	136	155	12.8666
CAGAUCCUAGGAAGUCUGU	chr12:6640503-6640804(+)$1	301	65	84	13.2115
AAGUGUAAUGAUGUACUUA	chr2:8824173-8824461(+)$1	288	178	197	13.6603
CAGAACCUUUAAAUUCUGU	chr7:117831985-117832241(+)$1	256	42	61	13.6603
CUGUUUCUUUAGCAACGGG	chr3:142754792-142755037(+)$1	245	19	38	13.2115
UUUUAUUAAAGAUUGAAAA	chr12:118588040-118588304(-)$1	264	24	43	14.4127
AAAUUGAUAAUGAAGUUGC	chr12:108962783-108963096(+)$1	313	169	188	14.4960
GUACAUAAAAUUUUGUAUC	chr21:15857877-15858132(-)$1	255	37	56	13.6603
UUUACAGUGCUUAGUGUGA	chr20:57608608-57608853(-)$1	245	83	102	14.3038
GUGUAAAUACUUCUGCAAA	chr12:46299477-46299740(+)$1	263	167	186	12.3954
ACGAAUGAUGAGUUUUGUG	chr14:93694396-93694638(+)$1	242	73	92	14.2718
CACGUCCCCUACCACGGAA	chr19:16243238-16243518(+)$1	280	256	275	14.4645
UAUAUCUGUAUAAAUAACG	chr19:47222849-47223097(-)$1	248	97	116	14.4597
GCGUGUUGUUCAGUAUGCA	chr10:81074212-81074453(+)$1	241	58	77	13.6603
CAGUGGUAUUUUAUACUUG	chr2:97525463-97525819(-)$1	356	126	145	14.1688
GGAGAUGUUUCUUUUUCUG	chr2:182794806-182795050(+)$1	244	191	210	14.1105
UUGUAUUAUAAUUUGCAAG	chr9:5774868-5775156(+)$1	288	149	168	13.2115
AAUCAGAUUAAUGUGGUUU	chr15:65410853-65411112(-)$1	259	231	250	14.2534
CAUAAAAAAUAAAUUAUGU	chr8:41786959-41787192(-)$1	233	163	182	14.2718
GAGCUUGAAUCUUGGUUCC	chr11:63527155-63527433(+)$1	278	136	155	14.2718
CCCAUCUUACUUAGUGAAA	chr8:48973729-48974027(+)$1	298	22	41	14.4390
GUUUUGUUUUGUAAUCACG	chr16:604397-604643(+)$1	246	225	244	12.9042
UCUGGGAAAAACACCAGAA	chr6:43304414-43304654(-)$1	240	201	220	13.6603
GUAGGAUACUGUAUCUGCA	chr2:152332225-152332500(+)$1	275	237	256	14.2718
GACUUUUUUGAUUAAGUGG	chr3:193856071-193856324(+)$1	253	43	62	12.3581
UAAGAAGUUGAGAUCUUGU	chr2:223806738-223807019(+)$1	281	196	215	14.4127
AUUUUGAAUUGUAAAUGUC	chr16:87439836-87440114(-)$1	278	119	138	13.3498
CAGAAAUAUCAACUUCUGG	chr6:153291684-153291920(-)$1	236	22	41	14.2383
CACUACUCCUGGAUAGUUC	chr15:40845298-40845560(-)$1	262	137	156	14.0854

#DB
(((((........))))))	chr1:7904354-7904626(+)$1	1	196	215	13.4570
(((((........))))).	chr1:155882761-155883037(-)$1	1	178	197	13.6603
..(((........).))..	chr11:57584640-57584882(+)$1	1	199	218	13.0860
(.(((........))).))	chr17:7417500-7417718(+)$1	1	141	160	14.1407
(((((........)))))(	chr16:18802936-18803184(-)$1	1	118	137	14.2435
(((((........))))).	chr19:19010228-19010540(-)$1	1	0	19	13.6603
(.(((........))).))	chr15:44706880-44707130(+)$1	1	120	139	14.4474
(((((........))))))	chr11:70230268-70230545(+)$1	1	189	208	14.2718
(((((........))))).	chr20:62521910-62522182(+)$1	1	173	192	14.0444
.((((........)))).)	chr1:184659710-184659960(-)$1	1	92	111	14.2012
(((.(........).))))	chr1:182856653-182856931(+)$1	1	224	243	14.0482
(((((........))))))	chr12:95387853-95388138(-)$1	1	202	221	14.2718
..(((........)))..)	chr2:37070848-37071177(-)$1	1	23	42	14.3461
(((((........))))))	chr3:5222202-5222450(+)$1	1	88	107	13.2115
(((((........)).)))	chr12:54635338-54635607(-)$1	1	85	104	13.1068
..(((........)))..)	chr3:20026070-20026343(+)$1	1	104	123	14.4645
..(((........)))...	chr12:49412891-49413115(-)$1	1	50	69	12.4118
(((((........))))((	chr2:65537909-65538156(-)$1	1	144	163	12.7294
(((((........))))))	chr11:111934023-111934275(+)$1	1	57	76	14.1105
..(((........)))...	chr8:12579859-12580095(-)$1	1	206	225	14.4390
.((((........)))).)	chr2:87004589-87004858(+)$1	1	18	37	14.1798
(((((........))))))	chr2:112874777-112875048(+)$1	1	74	93	14.3209
((.((........)).)))	chr6:10756842-10757118(+)$1	1	55	74	13.2780
(((((........)))).)	chr12:108962967-108963191(+)$1	1	109	128	13.9128
(((((........))))))	chr14:73586516-73586785(+)$1	1	98	117	14.2718
..(((........)))..)	chr18:61056850-61057143(-)$1	1	180	199	14.3461
..(((........)).)..	chr1:161933289-161933590(+)$1	1	176	195	13.6427
)((((........))))..	chr6:33420709-33420945(+)$1	1	68	87	12.4228
(((((........))))))	chr1:179813404-179813653(-)$1	1	1	20	13.2115
(((((........))).))	chr11:2418008-2418328(+)$1	1	23	42	14.2797
.((((........))))..	chr15:44096694-44096987(-)$1	1	261	280	14.0854
(((((........))))))	chr16:67134526-67134801(+)$1	1	245	264	14.1105
...((........))))))	chr4:73940684-73940939(-)$1	1	123	142	13.1882
(((.(........).))))	chr1:87571182-87571472(+)$1	1	131	150	13.3374
)((((........))))..	chr1:180082243-180082539(+)$1	1	206	225	12.4944
(.(((........))).))	chr1:202300746-202300971(-)$1	1	171	190	14.4474
(((((........))).))	chr12:110475621-110475906(+)$1	1	117	136	14.0246
(((((........))))))	chr1:46083689-46083956(+)$1	1	244	263	14.1105
(((((........)).)))	chr12:46299653-46299885(+)$1	1	136	155	12.8666
(((((........))))))	chr12:6640503-6640804(+)$1	1	65	84	13.2115
(((((........))))).	chr2:8824173-8824461(+)$1	1	178	197	13.6603
(((((........))))).	chr7:117831985-117832241(+)$1	1	42	61	13.6603
(((((........))))))	chr3:142754792-142755037(+)$1	1	19	38	13.2115
(((((........))))).	chr12:118588040-118588304(-)$1	1	24	43	14.4127
.((((........))))..	chr12:108962783-108963096(+)$1	1	169	188	14.4960
(((((........))))).	chr21:15857877-15858132(-)$1	1	37	56	13.6603
(.(((........))).))	chr20:57608608-57608853(-)$1	1	83	102	14.3038
.((((........))))))	chr12:46299477-46299740(+)$1	1	167	186	12.3954
(((((........))))))	chr14:93694396-93694638(+)$1	1	73	92	14.2718
..(((........)))..)	chr19:16243238-16243518(+)$1	1	256	275	14.4645
(.(((........))))))	chr19:47222849-47223097(-)$1	1	97	116	14.4597
(((((........))))).	chr10:81074212-81074453(+)$1	1	58	77	13.6603
.((((........)))).)	chr2:97525463-97525819(-)$1	1	126	145	14.1688
(((((........))))))	chr2:182794806-182795050(+)$1	1	191	210	14.1105
(((((........))))))	chr9:5774868-5775156(+)$1	1	149	168	13.2115
(((((........))))..	chr15:65410853-65411112(-)$1	1	231	250	14.2534
(((((........))))))	chr8:41786959-41787192(-)$1	1	163	182	14.2718
(((((........))))))	chr11:63527155-63527433(+)$1	1	136	155	14.2718
..(((........)))...	chr8:48973729-48974027(+)$1	1	22	41	14.4390
((..(........)..)))	chr16:604397-604643(+)$1	1	225	244	12.9042
(((((........))))).	chr6:43304414-43304654(-)$1	1	201	220	13.6603
(((((........))))))	chr2:152332225-152332500(+)$1	1	237	256	14.2718
)((((........))))..	chr3:193856071-193856324(+)$1	1	43	62	12.3581
(((((........))))).	chr2:223806738-223807019(+)$1	1	196	215	14.4127
((.((........)).)))	chr16:87439836-87440114(-)$1	1	119	138	13.3498
(((((........))))).	chr6:153291684-153291920(-)$1	1	22	41	14.2383
.((((........))))..	chr15:40845298-40845560(-)$1	1	137	156	14.0854

#PSSM
e : 0.23	! : 0.16	g : 0.14	f : 0.11	d : 0.08	c : 0.07	i : 0.05	" : 0.04	+ : 0.01	D : 0.01	[ : 0.01	: : 0.01	
d : 0.23	e : 0.22	g : 0.13	! : 0.08	f : 0.08	[ : 0.07	i : 0.05	" : 0.04	c : 0.02	+ : 0.01	
c : 0.22	e : 0.20	d : 0.20	g : 0.11	f : 0.08	i : 0.05	[ : 0.02	b : 0.01	a : 0.01	" : 0.01	! : 0.01	
e : 0.20	c : 0.20	d : 0.19	b : 0.10	g : 0.10	f : 0.07	i : 0.05	[ : 0.02	! : 0.01	
e : 0.20	c : 0.20	d : 0.19	g : 0.10	b : 0.08	f : 0.07	a : 0.05	i : 0.05	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
e : 0.20	c : 0.20	d : 0.19	g : 0.10	b : 0.08	f : 0.07	a : 0.05	i : 0.05	
e : 0.20	c : 0.20	d : 0.19	g : 0.10	b : 0.08	f : 0.07	i : 0.05	] : 0.04	2 : 0.01	
e : 0.20	c : 0.20	d : 0.19	g : 0.11	f : 0.08	] : 0.07	i : 0.07	b : 0.01	2 : 0.01	
e : 0.23	d : 0.22	g : 0.13	] : 0.08	f : 0.08	i : 0.07	2 : 0.05	4 : 0.02	b : 0.01	c : 0.01	> : 0.01	a : 0.01	
e : 0.23	g : 0.13	f : 0.11	2 : 0.08	i : 0.07	d : 0.05	c : 0.05	] : 0.05	4 : 0.04	3 : 0.04	: : 0.04	> : 0.01	F : 0.01	
: : 0.14	f : 0.14	g : 0.13	d : 0.08	c : 0.08	e : 0.07	i : 0.07	4 : 0.04	3 : 0.04	2 : 0.04	] : 0.02	C : 0.01	6 : 0.01	> : 0.01	a : 0.01	F : 0.01	

#score	924.7630008658618
#seq	67
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_CDS_m1_run1.txt

#BEAR
!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10802-11037(+)$1	235	51	91	50.5502
++eeeee^^^^^^^^^^^^^^^^^^^^^^^eeeee>>>>>	chrM:12294-12498(+)$1	204	20	60	40.6963
c[ccc[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc:::	chrM:8559-8761(+)$1	202	110	150	34.2780
dddd[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:7735-7942(+)$1	207	72	112	48.7181
eeee[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:11034-11271(+)$1	237	59	99	49.2212
!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10786-11002(+)$1	216	67	107	50.5502
eeee[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10956-11167(+)$1	211	137	177	49.2212
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:5241-5508(+)$1	267	113	153	49.0161
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13590-13795(+)$1	205	39	79	50.4915
c[ccc[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc:::	chrM:8574-8776(+)$1	202	95	135	34.2780
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13510-13763(+)$1	253	119	159	50.4915
:bb[ccc^^^^^^^^^^^^^^^^^^^^^ccc333bb::::	chrM:13718-13925(+)$1	207	7	47	35.3769
####bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13617-13832(+)$1	215	32	72	49.3289
((eeeee^^^^^^^^^^^^^^^^^^^^^^^eeeee77777	chrM:11786-11995(+)$1	209	130	170	41.5228
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb7777777	chrM:13644-13850(+)$1	206	83	123	39.6784
ccccc[ccc^^^^^^^^^^^^^^^^^^^^^ccc]ccc]cc	chrM:5211-5441(+)$1	230	48	88	37.7969
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13610-13817(+)$1	207	19	59	50.4915
c[ccc[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc:::	chrM:8576-8778(+)$1	202	93	133	34.2780
c[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:2852197-2852490(+)$1	293	108	148	50.0271
c[ccc[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc:::	chrM:8565-8769(+)$1	204	104	144	34.2780
c[ccc[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc:::	chrM:8556-8759(+)$1	203	113	153	34.2780
ddeeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:9784-10002(+)$1	218	49	89	43.7577
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13595-13803(+)$1	208	34	74	50.4915
c[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:7680-7895(+)$1	215	22	62	50.0271
eeee[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10993-11219(+)$1	226	100	140	49.2212
:ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ff	chrM:14647-14891(+)$1	244	150	190	45.6266
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13585-13790(+)$1	205	44	84	50.4915
!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:4602-4857(+)$1	255	71	111	50.5502
$$$$$ccc^^^^^^^^^^^^^^^^^^^^^^^^ccc55555	chrM:13633-13841(+)$1	208	3	43	41.0489
!!dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:85701321-85701646(-)$1	325	105	145	49.8755
""eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eeeeeggg	chrM:9183-9397(+)$1	214	119	159	41.7429
c[ccc[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc:::	chrM:8578-8783(+)$1	205	91	131	34.2780
dddd[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:7712-7935(+)$1	223	95	135	48.7181
+ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr12:112665943-112666192(-)$1	249	36	76	43.7330
ddeeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:9759-9977(+)$1	218	74	114	43.7577
eeee[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10934-11156(+)$1	222	159	199	49.2212
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb7777777	chrM:13664-13897(+)$1	233	63	103	39.6784
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13576-13779(+)$1	203	53	93	50.4915
:ffffff^^^^^^^^^^^^^^^^^^^^^^^^ffffff:::	chrM:9431-9644(+)$1	213	164	204	37.8163
!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10837-11051(+)$1	214	16	56	50.5502
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13604-13810(+)$1	206	25	65	50.4915
eeee[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:11030-11234(+)$1	204	63	103	49.2212
gggggg^^^^^^^^^^^^^^^^^^^^^^^ggggggg7777	chr10:860347-860666(-)$1	319	60	100	39.8861
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb7777777	chrM:13707-13918(+)$1	211	20	60	39.6784
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13566-13772(+)$1	206	63	103	50.4915
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:5007-5276(+)$1	269	30	70	50.4915
""eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eeeeeggg	chrM:9228-9463(+)$1	235	74	114	41.7429
eeee[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10967-11185(+)$1	218	126	166	49.2212
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13572-13776(+)$1	204	57	97	50.4915
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb7777777	chrM:13650-13862(+)$1	212	77	117	39.6784
((eeeee^^^^^^^^^^^^^^^^^^^^^^^eeeee77777	chrM:11758-11976(+)$1	218	158	198	41.5228
c[ccc[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc:::	chrM:8561-8765(+)$1	204	108	148	34.2780
eeee[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:11024-11230(+)$1	206	69	109	49.2212
c[ccc[ccc^^^^^^^^^^^^^^^^^^cccccc]ccc:::	chrM:8569-8774(+)$1	205	100	140	34.2780
$$ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^f	chrM:14691-14902(+)$1	211	105	145	46.7452
eeee[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:11019-11224(+)$1	205	74	114	49.2212
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc22bb7777777	chrM:13697-13907(+)$1	210	30	70	39.6784
""eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eeeeeggg	chrM:9197-9428(+)$1	231	105	145	41.7429
dddd[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:7695-7912(+)$1	217	112	152	48.7181
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13579-13785(+)$1	206	50	90	50.4915
!!ffffff^^^^^^^^^^^^^^^^^^^^^^ffffff22gg	chr12:56558156-56558465(-)$1	309	189	229	37.6003
####bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:13641-13844(+)$1	203	8	48	49.3289
ddeeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:9778-9984(+)$1	206	55	95	43.7577

#otherMatches

#Seq PSSM
CUAAUUAUUAGCAUCAUCCCCCUACUAUUUUUUAACCAAA	chrM:10802-11037(+)$1	235	51	91	50.5502
UGGUGCAACUCCAAAUAAAAGUAAUAACCAUGCACACUAC	chrM:12294-12498(+)$1	204	20	60	40.6963
GACUAAUCAAACUAACCUCAAAACAAAUGAUAGCCAUACA	chrM:8559-8761(+)$1	202	110	150	34.2780
CCUCAUCGCCCUCCCAUCCCUACGCAUCCUUUACAUAACA	chrM:7735-7942(+)$1	207	72	112	48.7181
GCCACAGAACUAAUCAUAUUUUAUAUCUUCUUCGAAACCA	chrM:11034-11271(+)$1	237	59	99	49.2212
CUAAUUAUUAGCAUCAUCCCCCUACUAUUUUUUAACCAAA	chrM:10786-11002(+)$1	216	67	107	50.5502
GCCACAGAACUAAUCAUAUUUUAUAUCUUCUUCGAAACCA	chrM:10956-11167(+)$1	211	137	177	49.2212
CCUAAUCUACUCCACCUCAAUCACACUACUCCCCAUAUCU	chrM:5241-5508(+)$1	267	113	153	49.0161
AACAGGUCAACCUCGCUUCCCCACCCUUACUAACAUUAAC	chrM:13590-13795(+)$1	205	39	79	50.4915
GACUAAUCAAACUAACCUCAAAACAAAUGAUAGCCAUACA	chrM:8574-8776(+)$1	202	95	135	34.2780
AACAGGUCAACCUCGCUUCCCCACCCUUACUAACAUUAAC	chrM:13510-13763(+)$1	253	119	159	50.4915
CGCAGGAUUUCUCAUUACUAACAACAUUUCCCCCGCAUCC	chrM:13718-13925(+)$1	207	7	47	35.3769
CCACCCUUACUAACAUUAACGAAAAUAACCCCACCCUACU	chrM:13617-13832(+)$1	215	32	72	49.3289
UCUCCUGAUCAAAUAUCACUCUCCUACUUACAGGACUCAA	chrM:11786-11995(+)$1	209	130	170	41.5228
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCGCAUCCCC	chrM:13644-13850(+)$1	206	83	123	39.6784
UGGGCCAUUAUCGAAGAAUUCACAAAAAACAAUAGCCUCA	chrM:5211-5441(+)$1	230	48	88	37.7969
AACAGGUCAACCUCGCUUCCCCACCCUUACUAACAUUAAC	chrM:13610-13817(+)$1	207	19	59	50.4915
GACUAAUCAAACUAACCUCAAAACAAAUGAUAGCCAUACA	chrM:8576-8778(+)$1	202	93	133	34.2780
AUGCAGUCCUAAUCCUAAUAAAUACUAACAAAUCAUUAUU	chr19:2852197-2852490(+)$1	293	108	148	50.0271
GACUAAUCAAACUAACCUCAAAACAAAUGAUAGCCAUACA	chrM:8565-8769(+)$1	204	104	144	34.2780
GACUAAUCAAACUAACCUCAAAACAAAUGAUAGCCAUACA	chrM:8556-8759(+)$1	203	113	153	34.2780
UAUUGGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCCAA	chrM:9784-10002(+)$1	218	49	89	43.7577
AACAGGUCAACCUCGCUUCCCCACCCUUACUAACAUUAAC	chrM:13595-13803(+)$1	208	34	74	50.4915
GUAUGCCCUUUUCCUAACACUCACAACAAAACUAACUAAU	chrM:7680-7895(+)$1	215	22	62	50.0271
GCCACAGAACUAAUCAUAUUUUAUAUCUUCUUCGAAACCA	chrM:10993-11219(+)$1	226	100	140	49.2212
AUUCAUCGACCUCCCCACCCCAUCCAACAUCUCCGCAUGA	chrM:14647-14891(+)$1	244	150	190	45.6266
AACAGGUCAACCUCGCUUCCCCACCCUUACUAACAUUAAC	chrM:13585-13790(+)$1	205	44	84	50.4915
AAUCCUUCUAAUAGCUAUCCUCUUCAACAAUAUACUCUCC	chrM:4602-4857(+)$1	255	71	111	50.5502
CAACCUCGCUUCCCCACCCUUACUAACAUUAACGAAAAUA	chrM:13633-13841(+)$1	208	3	43	41.0489
UAUAGUUACUACUUUUCACUUUGCAUCUUUUGACUAAUUA	chr11:85701321-85701646(-)$1	325	105	145	49.8755
CAUGUGAUUUCACUUCCACUCCAUAACGCUCCUCAUACUA	chrM:9183-9397(+)$1	214	119	159	41.7429
GACUAAUCAAACUAACCUCAAAACAAAUGAUAGCCAUACA	chrM:8578-8783(+)$1	205	91	131	34.2780
CCUCAUCGCCCUCCCAUCCCUACGCAUCCUUUACAUAACA	chrM:7712-7935(+)$1	223	95	135	48.7181
UUAAGAAUUAACUCCAGAUAAUAAUAACACCCUCAUUUCU	chr12:112665943-112666192(-)$1	249	36	76	43.7330
UAUUGGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCCAA	chrM:9759-9977(+)$1	218	74	114	43.7577
GCCACAGAACUAAUCAUAUUUUAUAUCUUCUUCGAAACCA	chrM:10934-11156(+)$1	222	159	199	49.2212
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCGCAUCCCC	chrM:13664-13897(+)$1	233	63	103	39.6784
AACAGGUCAACCUCGCUUCCCCACCCUUACUAACAUUAAC	chrM:13576-13779(+)$1	203	53	93	50.4915
CACUCCUAAACACAUCCGUAUUACUCGCAUCAGGAGUAUC	chrM:9431-9644(+)$1	213	164	204	37.8163
CUAAUUAUUAGCAUCAUCCCCCUACUAUUUUUUAACCAAA	chrM:10837-11051(+)$1	214	16	56	50.5502
AACAGGUCAACCUCGCUUCCCCACCCUUACUAACAUUAAC	chrM:13604-13810(+)$1	206	25	65	50.4915
GCCACAGAACUAAUCAUAUUUUAUAUCUUCUUCGAAACCA	chrM:11030-11234(+)$1	204	63	103	49.2212
CCUGCUCGUUUUUUAAUCACAUCUAAUUUGGUGGGUUUUU	chr10:860347-860666(-)$1	319	60	100	39.8861
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCGCAUCCCC	chrM:13707-13918(+)$1	211	20	60	39.6784
AACAGGUCAACCUCGCUUCCCCACCCUUACUAACAUUAAC	chrM:13566-13772(+)$1	206	63	103	50.4915
AUAAUAGCAGUUCUACCGUACAACCCUAACAUAACCAUUC	chrM:5007-5276(+)$1	269	30	70	50.4915
CAUGUGAUUUCACUUCCACUCCAUAACGCUCCUCAUACUA	chrM:9228-9463(+)$1	235	74	114	41.7429
GCCACAGAACUAAUCAUAUUUUAUAUCUUCUUCGAAACCA	chrM:10967-11185(+)$1	218	126	166	49.2212
AACAGGUCAACCUCGCUUCCCCACCCUUACUAACAUUAAC	chrM:13572-13776(+)$1	204	57	97	50.4915
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCGCAUCCCC	chrM:13650-13862(+)$1	212	77	117	39.6784
UCUCCUGAUCAAAUAUCACUCUCCUACUUACAGGACUCAA	chrM:11758-11976(+)$1	218	158	198	41.5228
GACUAAUCAAACUAACCUCAAAACAAAUGAUAGCCAUACA	chrM:8561-8765(+)$1	204	108	148	34.2780
GCCACAGAACUAAUCAUAUUUUAUAUCUUCUUCGAAACCA	chrM:11024-11230(+)$1	206	69	109	49.2212
GACUAAUCAAACUAACCUCAAAACAAAUGAUAGCCAUACA	chrM:8569-8774(+)$1	205	100	140	34.2780
CAUUCAUCGACCUCCCCACCCCAUCCAACAUCUCCGCAUG	chrM:14691-14902(+)$1	211	105	145	46.7452
GCCACAGAACUAAUCAUAUUUUAUAUCUUCUUCGAAACCA	chrM:11019-11224(+)$1	205	74	114	49.2212
CAGGAUUUCUCAUUACUAACAACAUUUCCCCCGCAUCCCC	chrM:13697-13907(+)$1	210	30	70	39.6784
CAUGUGAUUUCACUUCCACUCCAUAACGCUCCUCAUACUA	chrM:9197-9428(+)$1	231	105	145	41.7429
CCUCAUCGCCCUCCCAUCCCUACGCAUCCUUUACAUAACA	chrM:7695-7912(+)$1	217	112	152	48.7181
AACAGGUCAACCUCGCUUCCCCACCCUUACUAACAUUAAC	chrM:13579-13785(+)$1	206	50	90	50.4915
CCGGGCACUCUCCCCCCACCUAACCUGCCUGUGUCCAUGG	chr12:56558156-56558465(-)$1	309	189	229	37.6003
CCACCCUUACUAACAUUAACGAAAAUAACCCCACCCUACU	chrM:13641-13844(+)$1	203	8	48	49.3289
UAUUGGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCCAA	chrM:9778-9984(+)$1	206	55	95	43.7577

#DB
..(((...................................	chrM:10802-11037(+)$1	1	51	91	50.5502
..(((((.......................))))).....	chrM:12294-12498(+)$1	1	20	60	40.6963
(.(((.(((..................)))))).)))...	chrM:8559-8761(+)$1	1	110	150	34.2780
((((.((.................................	chrM:7735-7942(+)$1	1	72	112	48.7181
((((.((.................................	chrM:11034-11271(+)$1	1	59	99	49.2212
..(((...................................	chrM:10786-11002(+)$1	1	67	107	50.5502
((((.((.................................	chrM:10956-11167(+)$1	1	137	177	49.2212
........................................	chrM:5241-5508(+)$1	1	113	153	49.0161
..(((((.................................	chrM:13590-13795(+)$1	1	39	79	50.4915
(.(((.(((..................)))))).)))...	chrM:8574-8776(+)$1	1	95	135	34.2780
..(((((.................................	chrM:13510-13763(+)$1	1	119	159	50.4915
.((.(((.....................)))...))....	chrM:13718-13925(+)$1	1	7	47	35.3769
....((..................................	chrM:13617-13832(+)$1	1	32	72	49.3289
..(((((.......................))))).....	chrM:11786-11995(+)$1	1	130	170	41.5228
..(((.....................)))..)).......	chrM:13644-13850(+)$1	1	83	123	39.6784
(((((.(((.....................))).))).))	chrM:5211-5441(+)$1	1	48	88	37.7969
..(((((.................................	chrM:13610-13817(+)$1	1	19	59	50.4915
(.(((.(((..................)))))).)))...	chrM:8576-8778(+)$1	1	93	133	34.2780
(.(((...................................	chr19:2852197-2852490(+)$1	1	108	148	50.0271
(.(((.(((..................)))))).)))...	chrM:8565-8769(+)$1	1	104	144	34.2780
(.(((.(((..................)))))).)))...	chrM:8556-8759(+)$1	1	113	153	34.2780
(((((((............................)))))	chrM:9784-10002(+)$1	1	49	89	43.7577
..(((((.................................	chrM:13595-13803(+)$1	1	34	74	50.4915
(.(((...................................	chrM:7680-7895(+)$1	1	22	62	50.0271
((((.((.................................	chrM:10993-11219(+)$1	1	100	140	49.2212
.((((((...............................))	chrM:14647-14891(+)$1	1	150	190	45.6266
..(((((.................................	chrM:13585-13790(+)$1	1	44	84	50.4915
..(((...................................	chrM:4602-4857(+)$1	1	71	111	50.5502
.....(((........................))).....	chrM:13633-13841(+)$1	1	3	43	41.0489
..((((..................................	chr11:85701321-85701646(-)$1	1	105	145	49.8755
..(((((.........................))))))))	chrM:9183-9397(+)$1	1	119	159	41.7429
(.(((.(((..................)))))).)))...	chrM:8578-8783(+)$1	1	91	131	34.2780
((((.((.................................	chrM:7712-7935(+)$1	1	95	135	48.7181
.((((((.............................))))	chr12:112665943-112666192(-)$1	1	36	76	43.7330
(((((((............................)))))	chrM:9759-9977(+)$1	1	74	114	43.7577
((((.((.................................	chrM:10934-11156(+)$1	1	159	199	49.2212
..(((.....................)))..)).......	chrM:13664-13897(+)$1	1	63	103	39.6784
..(((((.................................	chrM:13576-13779(+)$1	1	53	93	50.4915
.((((((........................))))))...	chrM:9431-9644(+)$1	1	164	204	37.8163
..(((...................................	chrM:10837-11051(+)$1	1	16	56	50.5502
..(((((.................................	chrM:13604-13810(+)$1	1	25	65	50.4915
((((.((.................................	chrM:11030-11234(+)$1	1	63	103	49.2212
((((((.......................)))))))....	chr10:860347-860666(-)$1	1	60	100	39.8861
..(((.....................)))..)).......	chrM:13707-13918(+)$1	1	20	60	39.6784
..(((((.................................	chrM:13566-13772(+)$1	1	63	103	50.4915
..(((((.................................	chrM:5007-5276(+)$1	1	30	70	50.4915
..(((((.........................))))))))	chrM:9228-9463(+)$1	1	74	114	41.7429
((((.((.................................	chrM:10967-11185(+)$1	1	126	166	49.2212
..(((((.................................	chrM:13572-13776(+)$1	1	57	97	50.4915
..(((.....................)))..)).......	chrM:13650-13862(+)$1	1	77	117	39.6784
..(((((.......................))))).....	chrM:11758-11976(+)$1	1	158	198	41.5228
(.(((.(((..................)))))).)))...	chrM:8561-8765(+)$1	1	108	148	34.2780
((((.((.................................	chrM:11024-11230(+)$1	1	69	109	49.2212
(.(((.(((..................)))))).)))...	chrM:8569-8774(+)$1	1	100	140	34.2780
..((((((...............................)	chrM:14691-14902(+)$1	1	105	145	46.7452
((((.((.................................	chrM:11019-11224(+)$1	1	74	114	49.2212
..(((.....................)))..)).......	chrM:13697-13907(+)$1	1	30	70	39.6784
..(((((.........................))))))))	chrM:9197-9428(+)$1	1	105	145	41.7429
((((.((.................................	chrM:7695-7912(+)$1	1	112	152	48.7181
..(((((.................................	chrM:13579-13785(+)$1	1	50	90	50.4915
..((((((......................))))))..))	chr12:56558156-56558465(-)$1	1	189	229	37.6003
....((..................................	chrM:13641-13844(+)$1	1	8	48	49.3289
(((((((............................)))))	chrM:9778-9984(+)$1	1	55	95	43.7577

#PSSM
! : 0.34	c : 0.17	e : 0.12	d : 0.09	: : 0.04	" : 0.04	+ : 0.03	# : 0.03	( : 0.03	$ : 0.03	^ : 0.01	g : 0.01	
! : 0.34	[ : 0.15	e : 0.12	d : 0.09	f : 0.04	" : 0.04	# : 0.03	( : 0.03	$ : 0.03	+ : 0.01	^ : 0.01	b : 0.01	c : 0.01	g : 0.01	
e : 0.44	c : 0.31	f : 0.07	d : 0.06	# : 0.03	^ : 0.01	b : 0.01	$ : 0.01	g : 0.01	
e : 0.44	c : 0.31	f : 0.07	d : 0.06	# : 0.03	^ : 0.01	[ : 0.01	$ : 0.01	g : 0.01	
c : 0.33	e : 0.31	[ : 0.17	f : 0.07	b : 0.03	^ : 0.01	$ : 0.01	d : 0.01	g : 0.01	
e : 0.31	b : 0.20	^ : 0.19	[ : 0.14	f : 0.07	c : 0.03	d : 0.01	g : 0.01	
e : 0.31	^ : 0.25	c : 0.17	b : 0.17	f : 0.07	
^ : 0.80	c : 0.15	f : 0.03	
^ : 0.85	c : 0.14	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.92	c : 0.07	
^ : 0.79	c : 0.20	
^ : 0.77	c : 0.22	
^ : 0.76	c : 0.14	2 : 0.07	g : 0.01	
^ : 0.68	c : 0.15	2 : 0.07	e : 0.04	g : 0.01	f : 0.01	
^ : 0.66	c : 0.14	b : 0.07	e : 0.04	f : 0.03	3 : 0.01	g : 0.01	
^ : 0.60	c : 0.15	e : 0.09	b : 0.07	f : 0.03	3 : 0.01	g : 0.01	
^ : 0.60	] : 0.14	e : 0.09	7 : 0.07	f : 0.03	3 : 0.01	c : 0.01	g : 0.01	
^ : 0.60	c : 0.15	e : 0.09	7 : 0.07	f : 0.03	b : 0.01	g : 0.01	
^ : 0.55	c : 0.14	7 : 0.11	e : 0.09	f : 0.03	> : 0.01	b : 0.01	5 : 0.01	g : 0.01	
^ : 0.53	c : 0.14	7 : 0.12	e : 0.09	f : 0.03	> : 0.01	: : 0.01	5 : 0.01	2 : 0.01	
^ : 0.53	: : 0.15	7 : 0.12	e : 0.04	g : 0.04	> : 0.01	] : 0.01	5 : 0.01	f : 0.01	2 : 0.01	
^ : 0.52	: : 0.15	7 : 0.12	g : 0.06	e : 0.04	f : 0.03	> : 0.01	c : 0.01	5 : 0.01	
^ : 0.50	: : 0.15	7 : 0.12	g : 0.06	e : 0.04	f : 0.04	> : 0.01	c : 0.01	5 : 0.01	

#score	2813.6268479765736
#seq	63
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_CDS_m3_run2.txt

#BEAR
IIIII}BBYYDDDD}	chr16:30087575-30087857(+)$1	282	250	265	9.3018
JJJJJJJJEEEEE::	chr1:19444252-19444503(-)$1	251	110	125	8.3207
HHHHHHH{FFFFFF:	chr11:67810715-67811052(+)$1	337	58	73	6.2114
HHHHHHHHCCC{CCC	chr20:60905444-60905667(-)$1	223	25	40	6.0758
::FFFFFFYYEEEEE	chr2:232326205-232326473(-)$1	268	241	256	7.3025
GGGGGEEEEEDDDDB	chr17:79803647-79803853(-)$1	206	2	17	6.9217
IIIIIIII}BB::::	chr14:39648306-39648551(+)$1	245	211	226	7.0299
JJJJJJ}AYYBB}A}	chr9:712423-712691(+)$1	268	228	243	8.6776
C}FFFFFF}BB::::	chr20:31022794-31023039(+)$1	245	124	139	5.5663
DDD}EEEEE}DDDD}	chr14:102550932-102551190(-)$1	258	198	213	6.1836
DD}FFFFFF}DDDD:	chr9:116930028-116930252(+)$1	224	205	220	7.1323
JJJJJJJJFFFFFF{	chr17:80193762-80194054(+)$1	292	126	141	6.8960
IIIIIIIIIA{A{CC	chr17:75484225-75484478(+)$1	253	8	23	6.6509
IIIIIII{EEEEE::	chr1:67880748-67881031(-)$1	283	122	137	8.3521
GGGGGGBBYYDDDDB	chr10:101603535-101603757(+)$1	222	205	220	7.4579
IIIIIIIIEEEEE::	chr19:51857296-51857633(-)$1	337	33	48	8.7728
FFFFFF~~~~EEEEE	chr1:19452997-19453249(-)$1	252	197	212	7.8394
JJJJJJJJYYDDDD:	chr20:31022371-31022647(+)$1	276	234	249	9.4279
EEEE{EEEEE{DDDD	chr9:116997777-116997990(+)$1	213	99	114	5.4954
}CCCYYBBYYCCCDD	chr6:144745101-144745314(+)$1	213	163	178	5.5460
IIIIIIIIA}FFFFF	chr1:19474956-19475210(-)$1	254	124	139	7.8659
FFFCCCBBYYDDDD?	chr2:102445918-102446157(+)$1	239	205	220	6.8909
JJJJJJJJ}CCCGGG	chr14:102452074-102452338(+)$1	264	106	121	6.4907
FGGGGGGGYYDDDD:	chr20:62904670-62905013(+)$1	343	289	304	7.0378
JJJJJJJ{EEEEE::	chr1:245019103-245019350(-)$1	247	140	155	7.9308
F}FFFFFFYYBB}DD	chr9:116994001-116994239(+)$1	238	217	232	8.1889
BYYCCC}AYYBBDDD	chr2:232325278-232325512(-)$1	234	203	218	5.8889
JJJJJJJJJJKKCCC	chr1:245021406-245021671(-)$1	265	77	92	6.4093
EYYEEEEEYYEEEEE	chr2:232325148-232325375(-)$1	227	168	183	6.5513
JJJJJJJJJ{DDDD{	chr1:19523554-19523823(-)$1	269	4	19	6.2752
IIIIIIIII}CCC}A	chr17:1585083-1585368(-)$1	285	195	210	8.1390
EEEEE}BBYYBB}EE	chr20:60913433-60913664(-)$1	231	204	219	6.3482
IIIIII}BB}DDDDB	chr4:1806517-1806754(+)$1	237	183	198	9.1611
GG}AEEEEE}EEEEE	chr7:148717958-148718168(-)$1	210	118	133	6.8167
GGGGGG~~~~DDDD|	chr20:60913524-60913760(-)$1	236	169	184	5.9034
JJJJJJJJJJ{DDDD	chr2:220435706-220435980(-)$1	274	4	19	7.1227
FFFFFFA{EEEEE::	chr21:46915219-46915445(+)$1	226	17	32	7.2998
BBFFFFFFYYBB}CC	chr12:57567503-57567741(+)$1	238	174	189	7.4206
:EEEEE}CCCDDDD:	chr2:232319842-232320079(-)$1	237	215	230	5.0996
IIIIIIIIEEEEECC	chr7:127341134-127341411(+)$1	277	259	274	9.2338
JJJJJJJJJJDDDDc	chr14:21546492-21546748(+)$1	256	108	123	7.2116
FFFFFF}EEEEE:::	chr14:102549353-102549619(-)$1	266	189	204	7.0585
CCC}DDDDYYEEEEE	chr2:54874193-54874494(+)$1	301	173	188	6.1197
IIIIIIIIEEEEE::	chr2:54849382-54849624(+)$1	242	201	216	8.7728
CCC}DDDDEEEEEBB	chr1:19490652-19490888(-)$1	236	58	73	5.6228
GGGGFFFFFFDDDD:	chr19:51856276-51856562(-)$1	286	6	21	6.8748
HHHHHHHHYYCCC}D	chr22:36690062-36690303(-)$1	241	208	223	7.7346
CC}CCC~~~~DDDDY	chr1:19483293-19483520(-)$1	227	149	164	5.5863
E}FFFFFFEEEEE}E	chr20:60913242-60913494(-)$1	252	224	239	7.8275
}AFFFFFF}EEEEE}	chrX:128645800-128646041(-)$1	241	221	236	8.1256
YYFFFFFFYYCCCbb	chr9:117014773-117015022(+)$1	249	201	216	6.0755
JJJJJJJJJ}CCCZZ	chr20:34309609-34309854(-)$1	245	163	178	7.2738
FFFFFF~~~~DDDD:	chr1:19474425-19474680(-)$1	255	212	227	7.7797
FFF}DDDDYYCCCDD	chr21:46929283-46929528(+)$1	245	170	185	6.7071
IIIIIIKKEEEEE{D	chr2:232325103-232325348(-)$1	245	54	69	7.3190
F{CCCEEEEEDDDD{	chr14:102548629-102548883(-)$1	254	104	119	5.4783
HHHHHHHHYYCCC}B	chr1:245027002-245027293(-)$1	291	246	261	7.9834
FFFFFFZZZEEEEEZ	chr9:116929961-116930193(+)$1	232	187	202	7.1765
GGGGGGGBB}DDDDB	chr3:52836262-52836495(+)$1	233	195	210	6.5259
JJJJJJJJJJDDDD}	chr5:138661102-138661446(+)$1	344	261	276	7.8743
FFFFFF}AYYDDDD:	chr2:11755225-11755468(+)$1	243	122	137	8.9350
JJJJJJJJEEEEE::	chr20:60903825-60904055(-)$1	230	81	96	8.3207

#otherMatches

#Seq PSSM
CCAAGCCGCCGCCCA	chr16:30087575-30087857(+)$1	282	250	265	9.3018
GCUUAGUGGAGUUUG	chr1:19444252-19444503(-)$1	251	110	125	8.3207
GGGGCCUGGUGGGGG	chr11:67810715-67811052(+)$1	337	58	73	6.2114
CCACGCUGGGCCGCU	chr20:60905444-60905667(-)$1	223	25	40	6.0758
AGUUACUGGGCUUCU	chr2:232326205-232326473(-)$1	268	241	256	7.3025
AGGAGCUGCCGGAGG	chr17:79803647-79803853(-)$1	206	2	17	6.9217
UUUUCUUUAGCAAGA	chr14:39648306-39648551(+)$1	245	211	226	7.0299
GUUGUGGAGAUUGUU	chr9:712423-712691(+)$1	268	228	243	8.6776
GAGCAAGGACCCACC	chr20:31022794-31023039(+)$1	245	124	139	5.5663
CUUGUCCUUAGAUUA	chr14:102550932-102551190(-)$1	258	198	213	6.1836
CAAGACGGUCGUCCA	chr9:116930028-116930252(+)$1	224	205	220	7.1323
GAGGGGCCGUGGUGG	chr17:80193762-80194054(+)$1	292	126	141	6.8960
CUGGGGUUGCCCCGG	chr17:75484225-75484478(+)$1	253	8	23	6.6509
GGGAGGACGAGGUGG	chr1:67880748-67881031(-)$1	283	122	137	8.3521
AUUUUACAUGGGCCC	chr10:101603535-101603757(+)$1	222	205	220	7.4579
UUCCUCCUGACCCCA	chr19:51857296-51857633(-)$1	337	33	48	8.7728
GGAAGAGCCAACAGA	chr1:19452997-19453249(-)$1	252	197	212	7.8394
GCCGCCUUAUCCUCU	chr20:31022371-31022647(+)$1	276	234	249	9.4279
AGGGUGAACAAGGGG	chr9:116997777-116997990(+)$1	213	99	114	5.4954
GUCUUuuaguuucuu	chr6:144745101-144745314(+)$1	213	163	178	5.5460
UGCUUUGCCGUUGGC	chr1:19474956-19475210(-)$1	254	124	139	7.8659
UGCUUCCAUCUAGCU	chr2:102445918-102446157(+)$1	239	205	220	6.8909
AAGAGGGCACGGAAG	chr14:102452074-102452338(+)$1	264	106	121	6.4907
UGUUUGAAAGGGGGA	chr20:62904670-62905013(+)$1	343	289	304	7.0378
AGGAGGCAAGUUAAU	chr1:245019103-245019350(-)$1	247	140	155	7.9308
CUGAUUUCUCGCCAG	chr9:116994001-116994239(+)$1	238	217	232	8.1889
UGAUGUGUGAUACAU	chr2:232325278-232325512(-)$1	234	203	218	5.8889
UUUUUUUCUGUGUAA	chr1:245021406-245021671(-)$1	265	77	92	6.4093
AAGAAACAGAAAGUG	chr2:232325148-232325375(-)$1	227	168	183	6.5513
UGUCACAUUAUAGAA	chr1:19523554-19523823(-)$1	269	4	19	6.2752
GGAGGACGCCCCUGU	chr17:1585083-1585368(-)$1	285	195	210	8.1390
CUCUGACCAAGCAUG	chr20:60913433-60913664(-)$1	231	204	219	6.3482
GUGGUGCUGAGGGCC	chr4:1806517-1806754(+)$1	237	183	198	9.1611
CGCGUUCUAAUUUCU	chr7:148717958-148718168(-)$1	210	118	133	6.8167
CAAACCCAACUUCCA	chr20:60913524-60913760(-)$1	236	169	184	5.9034
CUGCAGGCGGUCGGC	chr2:220435706-220435980(-)$1	274	4	19	7.1227
GCCCAGCAGUCCCCA	chr21:46915219-46915445(+)$1	226	17	32	7.2998
CAACACCUCAGUCUG	chr12:57567503-57567741(+)$1	238	174	189	7.4206
AAGGACUCUGGGGUU	chr2:232319842-232320079(-)$1	237	215	230	5.0996
CAGACAGAUACGACU	chr7:127341134-127341411(+)$1	277	259	274	9.2338
GAUGGGGGGGCCAUC	chr14:21546492-21546748(+)$1	256	108	123	7.2116
acaaaguuugagaac	chr14:102549353-102549619(-)$1	266	189	204	7.0585
CGGGCCCUGGUGGCC	chr2:54874193-54874494(+)$1	301	173	188	6.1197
CAGGCAUUCAACACU	chr2:54849382-54849624(+)$1	242	201	216	8.7728
UGUGAUGGCCACUCU	chr1:19490652-19490888(-)$1	236	58	73	5.6228
UGUCCUUGGCAGGAG	chr19:51856276-51856562(-)$1	286	6	21	6.8748
GCAGCAGUUGUGGCC	chr22:36690062-36690303(-)$1	241	208	223	7.7346
AAAAGGAAGUUAACU	chr1:19483293-19483520(-)$1	227	149	164	5.5863
ACGUGGGCGUGGGUA	chr20:60913242-60913494(-)$1	252	224	239	7.8275
UCUCCGUGUCAUUUG	chrX:128645800-128646041(-)$1	241	221	236	8.1256
GUGACAGCUCUGCUC	chr9:117014773-117015022(+)$1	249	201	216	6.0755
CUUCGUGGGAUCUUU	chr20:34309609-34309854(-)$1	245	163	178	7.2738
AAAGGAAAUUGCAGU	chr1:19474425-19474680(-)$1	255	212	227	7.7797
ACCUGCGGCCGGCGC	chr21:46929283-46929528(+)$1	245	170	185	6.7071
UGUUUGACAUCUUGU	chr2:232325103-232325348(-)$1	245	54	69	7.3190
GGUUGUGUCAAACCG	chr14:102548629-102548883(-)$1	254	104	119	5.4783
GCGGCCCCACCUCGC	chr1:245027002-245027293(-)$1	291	246	261	7.9834
GCUCCCACCGGGUGA	chr9:116929961-116930193(+)$1	232	187	202	7.1765
GGCUCUGAGAUCGUG	chr3:52836262-52836495(+)$1	233	195	210	6.5259
UCUUUGUUCUUCACC	chr5:138661102-138661446(+)$1	344	261	276	7.8743
AGGCCUUGGAGAGUG	chr2:11755225-11755468(+)$1	243	122	137	8.9350
CCUGCCAUGCCCAUG	chr20:60903825-60904055(-)$1	230	81	96	8.3207

#DB
))))).))..)))).	chr16:30087575-30087857(+)$1	1	250	265	9.3018
)))))))))))))..	chr1:19444252-19444503(-)$1	1	110	125	8.3207
(((((((.((((((.	chr11:67810715-67811052(+)$1	1	58	73	6.2114
(((((((((((.(((	chr20:60905444-60905667(-)$1	1	25	40	6.0758
..))))))..)))))	chr2:232326205-232326473(-)$1	1	241	256	7.3025
(((((((((((((((	chr17:79803647-79803853(-)$1	1	2	17	6.9217
)))))))).))....	chr14:39648306-39648551(+)$1	1	211	226	7.0299
)))))).)..)).).	chr9:712423-712691(+)$1	1	228	243	8.6776
).)))))).))....	chr20:31022794-31023039(+)$1	1	124	139	5.5663
))).))))).)))).	chr14:102550932-102551190(-)$1	1	198	213	6.1836
)).)))))).)))).	chr9:116930028-116930252(+)$1	1	205	220	7.1323
((((((((((((((.	chr17:80193762-80194054(+)$1	1	126	141	6.8960
((((((((((.(.((	chr17:75484225-75484478(+)$1	1	8	23	6.6509
(((((((.(((((..	chr1:67880748-67881031(-)$1	1	122	137	8.3521
))))))))..)))))	chr10:101603535-101603757(+)$1	1	205	220	7.4579
(((((((((((((..	chr19:51857296-51857633(-)$1	1	33	48	8.7728
))))))....)))))	chr1:19452997-19453249(-)$1	1	197	212	7.8394
))))))))..)))).	chr20:31022371-31022647(+)$1	1	234	249	9.4279
((((.(((((.((((	chr9:116997777-116997990(+)$1	1	99	114	5.4954
.)))..))..)))))	chr6:144745101-144745314(+)$1	1	163	178	5.5460
))))))))).)))))	chr1:19474956-19475210(-)$1	1	124	139	7.8659
))))))))..)))).	chr2:102445918-102446157(+)$1	1	205	220	6.8909
)))))))).)))(((	chr14:102452074-102452338(+)$1	1	106	121	6.4907
))))))))..)))).	chr20:62904670-62905013(+)$1	1	289	304	7.0378
(((((((.(((((..	chr1:245019103-245019350(-)$1	1	140	155	7.9308
).))))))..)).))	chr9:116994001-116994239(+)$1	1	217	232	8.1889
)..))).)..)))))	chr2:232325278-232325512(-)$1	1	203	218	5.8889
((((((((((..(((	chr1:245021406-245021671(-)$1	1	77	92	6.4093
)..)))))..)))))	chr2:232325148-232325375(-)$1	1	168	183	6.5513
(((((((((.((((.	chr1:19523554-19523823(-)$1	1	4	19	6.2752
))))))))).))).)	chr17:1585083-1585368(-)$1	1	195	210	8.1390
))))).))..)).))	chr20:60913433-60913664(-)$1	1	204	219	6.3482
)))))).)).)))))	chr4:1806517-1806754(+)$1	1	183	198	9.1611
)).)))))).)))))	chr7:148717958-148718168(-)$1	1	118	133	6.8167
))))))....)))).	chr20:60913524-60913760(-)$1	1	169	184	5.9034
((((((((((.((((	chr2:220435706-220435980(-)$1	1	4	19	7.1227
(((((((.(((((..	chr21:46915219-46915445(+)$1	1	17	32	7.2998
))))))))..)).))	chr12:57567503-57567741(+)$1	1	174	189	7.4206
.))))).))))))).	chr2:232319842-232320079(-)$1	1	215	230	5.0996
)))))))))))))))	chr7:127341134-127341411(+)$1	1	259	274	9.2338
))))))))))(((((	chr14:21546492-21546748(+)$1	1	108	123	7.2116
)))))).)))))...	chr14:102549353-102549619(-)$1	1	189	204	7.0585
))).))))..)))))	chr2:54874193-54874494(+)$1	1	173	188	6.1197
)))))))))))))..	chr2:54849382-54849624(+)$1	1	201	216	8.7728
))).))))(((((((	chr1:19490652-19490888(-)$1	1	58	73	5.6228
((((((((((((((.	chr19:51856276-51856562(-)$1	1	6	21	6.8748
))))))))..))).)	chr22:36690062-36690303(-)$1	1	208	223	7.7346
)).)))....)))).	chr1:19483293-19483520(-)$1	1	149	164	5.5863
).))))))))))).)	chr20:60913242-60913494(-)$1	1	224	239	7.8275
.))))))).))))).	chrX:128645800-128646041(-)$1	1	221	236	8.1256
..))))))..)))((	chr9:117014773-117015022(+)$1	1	201	216	6.0755
))))))))).)))..	chr20:34309609-34309854(-)$1	1	163	178	7.2738
))))))....)))).	chr1:19474425-19474680(-)$1	1	212	227	7.7797
))).))))..)))))	chr21:46929283-46929528(+)$1	1	170	185	6.7071
((((((..(((((.(	chr2:232325103-232325348(-)$1	1	54	69	7.3190
(.((((((((((((.	chr14:102548629-102548883(-)$1	1	104	119	5.4783
))))))))..))).)	chr1:245027002-245027293(-)$1	1	246	261	7.9834
))))))...))))).	chr9:116929961-116930193(+)$1	1	187	202	7.1765
))))))))).)))))	chr3:52836262-52836495(+)$1	1	195	210	6.5259
)))))))))))))).	chr5:138661102-138661446(+)$1	1	261	276	7.8743
)))))).)..)))).	chr2:11755225-11755468(+)$1	1	122	137	8.9350
(((((((((((((..	chr20:60903825-60904055(-)$1	1	81	96	8.3207

#PSSM
J : 0.20	I : 0.17	F : 0.17	G : 0.09	H : 0.06	C : 0.06	E : 0.06	: : 0.03	D : 0.03	} : 0.03	B : 0.03	Y : 0.01	
J : 0.20	I : 0.17	F : 0.12	G : 0.11	H : 0.06	C : 0.06	} : 0.04	E : 0.04	Y : 0.04	D : 0.03	: : 0.01	B : 0.01	A : 0.01	{ : 0.01	
F : 0.24	J : 0.20	I : 0.17	G : 0.09	H : 0.06	C : 0.06	} : 0.04	E : 0.04	Y : 0.03	D : 0.01	
F : 0.22	J : 0.20	I : 0.17	G : 0.09	C : 0.08	H : 0.06	} : 0.06	E : 0.06	A : 0.01	
F : 0.24	J : 0.20	I : 0.17	G : 0.08	E : 0.08	H : 0.06	C : 0.06	D : 0.04	{ : 0.01	Y : 0.01	
F : 0.24	J : 0.20	I : 0.16	E : 0.11	H : 0.06	G : 0.06	C : 0.04	D : 0.04	} : 0.03	Y : 0.01	
J : 0.19	F : 0.14	I : 0.12	E : 0.09	} : 0.09	B : 0.08	H : 0.06	~ : 0.06	D : 0.04	G : 0.03	A : 0.01	K : 0.01	Z : 0.01	
J : 0.17	F : 0.14	B : 0.11	E : 0.11	I : 0.11	{ : 0.06	~ : 0.06	H : 0.04	A : 0.04	D : 0.04	G : 0.01	C : 0.01	K : 0.01	Z : 0.01	
Y : 0.30	E : 0.27	J : 0.09	F : 0.06	} : 0.06	~ : 0.06	C : 0.03	I : 0.03	B : 0.03	A : 0.01	Z : 0.01	
Y : 0.30	E : 0.27	} : 0.12	~ : 0.06	J : 0.06	F : 0.04	C : 0.04	B : 0.03	A : 0.01	{ : 0.01	
D : 0.32	E : 0.30	C : 0.14	B : 0.11	F : 0.04	{ : 0.04	K : 0.01	
D : 0.35	E : 0.30	C : 0.12	B : 0.08	F : 0.04	: : 0.03	{ : 0.01	A : 0.01	K : 0.01	
D : 0.37	E : 0.29	C : 0.14	} : 0.06	F : 0.04	: : 0.04	{ : 0.01	G : 0.01	
D : 0.41	: : 0.16	E : 0.12	C : 0.08	} : 0.06	F : 0.04	A : 0.01	G : 0.01	B : 0.01	b : 0.01	Z : 0.01	{ : 0.01	
: : 0.29	D : 0.12	E : 0.11	B : 0.09	} : 0.08	C : 0.08	{ : 0.04	Z : 0.03	F : 0.01	? : 0.01	G : 0.01	A : 0.01	| : 0.01	c : 0.01	Y : 0.01	b : 0.01	

#score	445.6230147153613
#seq	62
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_CDS_m2_run1.txt

#BEAR
ddddbbvvvvvvvvvvvvvbb]d	chr2:21236022-21236249(-)$1	227	194	217	22.6339
!ddddwwwwwwwwwwwwwwdddd	chr2:21234638-21234862(-)$1	224	163	186	21.8331
!eeeeeuuuuuuuuuuuueeeee	chr3:195791077-195791303(-)$1	226	167	190	23.2740
ddd[cccuuuuuuuuuuuucccd	chr2:216232510-216232747(-)$1	237	27	50	22.1028
!a[cccvvvvvvvvvvvvvccc]	chr4:74280704-74280919(+)$1	215	109	132	23.8283
cddddyyyyyyyyyyyyyyyydd	chr4:74283198-74283424(+)$1	226	62	85	20.0654
ggggg[bbtttttttttttbb]g	chr4:74310693-74310906(+)$1	213	111	134	20.3827
####bbvvvvvvvvvvvvvbbff	chr2:216292953-216293158(-)$1	205	154	177	22.5589
ffffffvvvvvvvvvvvvvffff	chr2:21237327-21237561(-)$1	234	123	146	22.7909
eee!!avvvvvvvvvvvvva22e	chr5:180670238-180670479(-)$1	241	30	53	23.1002
hhhhhhyyyyyyyyyyyyyyyyh	chr4:155527772-155528113(-)$1	341	306	329	19.1787
ffffffwwwwwwwwwwwwwwfff	chr2:216246892-216247136(-)$1	244	64	87	21.5666
hhhhhauuuuuuuuuuuua]hhh	chr2:21236049-21236320(-)$1	271	52	75	21.8937
iiiiiixxxxxxxxxxxxxxxii	chr4:74307937-74308156(+)$1	219	62	85	17.3279
ffffffuuuuuuuuuuuufffff	chr2:21228165-21228390(-)$1	225	83	106	22.0518
####bbvvvvvvvvvvvvvbb33	chr2:216248668-216248943(-)$1	275	232	255	22.6426
!a[cccvvvvvvvvvvvvvccc]	chr4:74280719-74280980(+)$1	261	94	117	23.8283
hhhhhhhuuuuuuuuuuuuhhhh	chr2:216289760-216290012(-)$1	252	221	244	20.2262
ccccccuuuuuuuuuuuuccc]c	chr9:124091418-124091661(+)$1	243	27	50	22.7504
iiiiiiiitttttttttttiiii	chr2:216274715-216274934(-)$1	219	12	35	19.9826
ee[dddduuuuuuuuuuuudddd	chr2:216229576-216229807(-)$1	231	110	133	21.5611
!ddddwwwwwwwwwwwwwwdddd	chr2:21234596-21234838(-)$1	242	139	162	21.8331
"eeeeevvvvvvvvvvvvveeee	chr2:216256263-216256497(-)$1	234	102	125	23.8820
!!abbwwwwwwwwwwwwwwbb]a	chr7:103243648-103243900(-)$1	252	200	223	21.5989
[eeeeettttttttttteeeee]	chr4:74313078-74313280(+)$1	202	137	160	21.8706
::eeeeeuuuuuuuuuuuueeee	chr2:216298029-216298271(-)$1	242	218	241	20.5624
ceeeeeuuuuuuuuuuuueeeee	chr2:21235115-21235340(-)$1	225	159	182	23.0371
bb[ccctttttttttttccc]bb	chr3:133475573-133475784(+)$1	211	19	42	20.3867
[fffffftttttttttttfffff	chr2:21234713-21234936(-)$1	223	44	67	21.0257
#fffffftttttttttttfffff	chr2:21234476-21234694(-)$1	218	110	133	20.9850
fff[bbvvvvvvvvvvvvvbb22	chr15:44057563-44057815(+)$1	252	104	127	22.4695
Fddddwwwwwwwwwwwwwwdddd	chr2:216230127-216230341(-)$1	214	12	35	21.1989
ggggg[bbtttttttttttbb]g	chr4:74310706-74310939(+)$1	233	98	121	20.3827
!ddddwwwwwwwwwwwwwwdddd	chr2:21234494-21234764(-)$1	270	65	88	21.8331
ffff[ayyyyyyyyyyyyyyyya	chr3:133473253-133473498(+)$1	245	89	112	19.8904
Ceeeeettttttttttteeeee:	chrX:132670161-132670410(-)$1	249	119	142	19.5031
dd[cccvvvvvvvvvvvvvccc]	chr6:160479844-160480079(+)$1	235	207	230	23.4360
!a[cccvvvvvvvvvvvvvccc]	chr4:74280662-74280873(+)$1	211	151	174	23.8283
eeeeewwwwwwwwwwwwwweeee	chr2:216272992-216273231(-)$1	239	188	211	22.3790
[eeeeettttttttttteeeee2	chr3:133467184-133467437(+)$1	253	38	61	21.5976
eee[bbuuuuuuuuuuuubb22e	chr2:21246313-21246555(-)$1	242	162	185	21.8913
gggggauuuuuuuuuuuua]ggg	chr2:21236142-21236379(-)$1	237	111	134	23.1714
%eeeeeuuuuuuuuuuuueeeee	chr10:7765402-7765609(+)$1	207	71	94	22.5739
::eeeeettttttttttteeeee	chr2:216274651-216274892(-)$1	241	182	205	19.8237
"eeeeettttttttttteeeeeh	chr4:74283726-74283948(+)$1	222	30	53	21.6831
"eeeeettttttttttteeeeeh	chr4:74283705-74283920(+)$1	215	51	74	21.6831
ffffffvvvvvvvvvvvvvffff	chr4:74283154-74283398(+)$1	244	28	51	22.7909
bb[cccvvvvvvvvvvvvvccc]	chr12:9245960-9246179(-)$1	219	107	130	23.1746
ddd[bbwwwwwwwwwwwwwwbbd	chr2:216245679-216245903(-)$1	224	41	64	21.1814
hhh[bbvvvvvvvvvvvvvbb]h	chr2:21234210-21234439(-)$1	229	8	31	22.5399
gggggguuuuuuuuuuuuggggg	chr7:103131079-103131335(-)$1	256	175	198	22.6604
:eeeeevvvvvvvvvvvvveeee	chr6:31963704-31963991(+)$1	287	221	244	22.8953
:eeeeeuuuuuuuuuuuueeeee	chr2:216286717-216286943(-)$1	226	201	224	22.2201
ffffffuuuuuuuuuuuufffff	chr2:21228149-21228365(-)$1	216	58	81	22.0518
ggggggtttttttttttgggggg	chr2:216243810-216244022(-)$1	212	13	36	21.0665
cddddyyyyyyyyyyyyyyyydd	chr4:74283238-74283458(+)$1	220	22	45	20.0654

#otherMatches

#Seq PSSM
ACCUGCUUUCCUACAAUGUGCAA	chr2:21236022-21236249(-)$1	227	194	217	22.6339
UCUAUGAAAUUAACAACAAAUGG	chr2:21234638-21234862(-)$1	224	163	186	21.8331
UACAGUUCUAGAUGUUAUACUGU	chr3:195791077-195791303(-)$1	226	167	190	23.2740
ACUCGUGCUUUGACCCCUACACA	chr2:216232510-216232747(-)$1	237	27	50	22.1028
CCAAGACAUAUGAAACCACUCUA	chr4:74280704-74280919(+)$1	215	109	132	23.8283
UACACCAAGAAAGUACCCCAAGU	chr4:74283198-74283424(+)$1	226	62	85	20.0654
GCAGAGGAGAUGUGCUGGAUUGU	chr4:74310693-74310906(+)$1	213	111	134	20.3827
AGAAGGAUAAUCGAGGAAACCUG	chr2:216292953-216293158(-)$1	205	154	177	22.5589
UCUGGGAGUCUUCCUUAUACCCA	chr2:21237327-21237561(-)$1	234	123	146	22.7909
AGAGUUGGAAACUUUUAAAAUAU	chr5:180670238-180670479(-)$1	241	30	53	23.1002
UUCAUAAAAAAUAAUAAAUAGAU	chr4:155527772-155528113(-)$1	341	306	329	19.1787
AUUUGCUUUUCACUCCCUUUGCA	chr2:216246892-216247136(-)$1	244	64	87	21.5666
GAUUCCAUCUGCCAUCUCGAGAG	chr2:21236049-21236320(-)$1	271	52	75	21.8937
UUUUAUUUCACAGAUUCAUUUAU	chr4:74307937-74308156(+)$1	219	62	85	17.3279
UGAGAUAACCGUGCCUGAAUCUC	chr2:21228165-21228390(-)$1	225	83	106	22.0518
UUUUACUUAUUCAGAUACUGUUU	chr2:216248668-216248943(-)$1	275	232	255	22.6426
CCAAGACAUAUGAAACCACUCUA	chr4:74280719-74280980(+)$1	261	94	117	23.8283
GGACUGAUGACUUUAUUAUUUAG	chr2:216289760-216290012(-)$1	252	221	244	20.2262
GGGGGCAGAUAAAGGAAGGCCAC	chr9:124091418-124091661(+)$1	243	27	50	22.7504
UUGAAGAUUACUGAACAUCAUCU	chr2:216274715-216274934(-)$1	219	12	35	19.9826
UGUUAUGAUGAUGGGAAGACAUA	chr2:216229576-216229807(-)$1	231	110	133	21.5611
UCUAUGAAAUUAACAACAAAUGG	chr2:21234596-21234838(-)$1	242	139	162	21.8331
GUUGUCAAUUUCUCCUUCAGACA	chr2:216256263-216256497(-)$1	234	102	125	23.8820
gagacucugaauuccaaauguac	chr7:103243648-103243900(-)$1	252	200	223	21.5989
CUCUGUCAAACAAAAUAACAGAA	chr4:74313078-74313280(+)$1	202	137	160	21.8706
AUCGCAAGUAAGGAAGAGAUUGU	chr2:216298029-216298271(-)$1	242	218	241	20.5624
UGAGGUUUAACUCCUCCUACCUC	chr2:21235115-21235340(-)$1	225	159	182	23.0371
CUAUGAUCAAUUGAAUUUCAAGG	chr3:133475573-133475784(+)$1	211	19	42	20.3867
UGGAUCACUAAAUUCCCAUGGUC	chr2:21234713-21234936(-)$1	223	44	67	21.0257
UGGGUGUCGACAGCAAAAACAUU	chr2:21234476-21234694(-)$1	218	110	133	20.9850
CUUCACAUCUCACUAACAAGUUU	chr15:44057563-44057815(+)$1	252	104	127	22.4695
ACUACAAGAUUGGAGAGAAGUGG	chr2:216230127-216230341(-)$1	214	12	35	21.1989
GCAGAGGAGAUGUGCUGGAUUGU	chr4:74310706-74310939(+)$1	233	98	121	20.3827
UCUAUGAAAUUAACAACAAAUGG	chr2:21234494-21234764(-)$1	270	65	88	21.8331
ACAGACUUUCUAUUAUGCUGUUG	chr3:133473253-133473498(+)$1	245	89	112	19.8904
CGCCUGGAAACAGUCAGCAGGCA	chrX:132670161-132670410(-)$1	249	119	142	19.5031
GUCGGAAUUGAGAAAAGCCUCCA	chr6:160479844-160480079(+)$1	235	207	230	23.4360
CCAAGACAUAUGAAACCACUCUA	chr4:74280662-74280873(+)$1	211	151	174	23.8283
CCUGUCUACUUCACAAACAACAG	chr2:216272992-216273231(-)$1	239	188	211	22.3790
UGGGCCCUUCCACCUCUGGCCUC	chr3:133467184-133467437(+)$1	253	38	61	21.5976
AGAUUCUGUUUGCCUUUUGAUUU	chr2:21246313-21246555(-)$1	242	162	185	21.8913
GAUUCCAUCUGCCAUCUCGAGAG	chr2:21236142-21236379(-)$1	237	111	134	23.1714
AACAUCCUCUUUGUCAUCGAUGU	chr10:7765402-7765609(+)$1	207	71	94	22.5739
AAGAAGUGACUCGCUUUGACUUC	chr2:216274651-216274892(-)$1	241	182	205	19.8237
UUUCAGCUUCACCUCUUUUGAAU	chr4:74283726-74283948(+)$1	222	30	53	21.6831
UUUCAGCUUCACCUCUUUUGAAU	chr4:74283705-74283920(+)$1	215	51	74	21.6831
CUGUUUUAUCUACUAUGUUAGAC	chr4:74283154-74283398(+)$1	244	28	51	22.7909
GGUGGUGGUAAAGUAAGUAACUU	chr12:9245960-9246179(-)$1	219	107	130	23.1746
AAAUGCUUAUUUCACAACUUGCU	chr2:216245679-216245903(-)$1	224	41	64	21.1814
UUGACAACAUUUACAGCUCUGAC	chr2:21234210-21234439(-)$1	229	8	31	22.5399
GCUGGAAAAGAAUCACCAUCCAG	chr7:103131079-103131335(-)$1	256	175	198	22.6604
CGGAGGACUCUCUUUGCCCCUUC	chr6:31963704-31963991(+)$1	287	221	244	22.8953
ACUUGCACUAUGCCAAAAGCAGG	chr2:216286717-216286943(-)$1	226	201	224	22.2201
UGAGAUAACCGUGCCUGAAUCUC	chr2:21228149-21228365(-)$1	216	58	81	22.0518
UCAGGUCACACCCACAAGCCUGA	chr2:216243810-216244022(-)$1	212	13	36	21.0665
UACACCAAGAAAGUACCCCAAGU	chr4:74283238-74283458(+)$1	220	22	45	20.0654

#DB
((((((.............)).)	chr2:21236022-21236249(-)$1	1	194	217	22.6339
.((((..............))))	chr2:21234638-21234862(-)$1	1	163	186	21.8331
.(((((............)))))	chr3:195791077-195791303(-)$1	1	167	190	23.2740
(((.(((............))))	chr2:216232510-216232747(-)$1	1	27	50	22.1028
.(.(((.............))).	chr4:74280704-74280919(+)$1	1	109	132	23.8283
(((((................))	chr4:74283198-74283424(+)$1	1	62	85	20.0654
(((((.((...........)).)	chr4:74310693-74310906(+)$1	1	111	134	20.3827
....((.............))))	chr2:216292953-216293158(-)$1	1	154	177	22.5589
((((((.............))))	chr2:21237327-21237561(-)$1	1	123	146	22.7909
(((..(.............)..)	chr5:180670238-180670479(-)$1	1	30	53	23.1002
((((((................)	chr4:155527772-155528113(-)$1	1	306	329	19.1787
((((((..............)))	chr2:216246892-216247136(-)$1	1	64	87	21.5666
((((((............).)))	chr2:21236049-21236320(-)$1	1	52	75	21.8937
((((((...............))	chr4:74307937-74308156(+)$1	1	62	85	17.3279
((((((............)))))	chr2:21228165-21228390(-)$1	1	83	106	22.0518
....((.............))..	chr2:216248668-216248943(-)$1	1	232	255	22.6426
.(.(((.............))).	chr4:74280719-74280980(+)$1	1	94	117	23.8283
(((((((............))))	chr2:216289760-216290012(-)$1	1	221	244	20.2262
((((((............))).)	chr9:124091418-124091661(+)$1	1	27	50	22.7504
((((((((...........))))	chr2:216274715-216274934(-)$1	1	12	35	19.9826
((.((((............))))	chr2:216229576-216229807(-)$1	1	110	133	21.5611
.((((..............))))	chr2:21234596-21234838(-)$1	1	139	162	21.8331
.(((((.............))))	chr2:216256263-216256497(-)$1	1	102	125	23.8820
..(((..............)).)	chr7:103243648-103243900(-)$1	1	200	223	21.5989
.(((((...........))))).	chr4:74313078-74313280(+)$1	1	137	160	21.8706
..(((((............))))	chr2:216298029-216298271(-)$1	1	218	241	20.5624
((((((............)))))	chr2:21235115-21235340(-)$1	1	159	182	23.0371
((.(((...........))).))	chr3:133475573-133475784(+)$1	1	19	42	20.3867
.((((((...........)))))	chr2:21234713-21234936(-)$1	1	44	67	21.0257
.((((((...........)))))	chr2:21234476-21234694(-)$1	1	110	133	20.9850
(((.((.............))..	chr15:44057563-44057815(+)$1	1	104	127	22.4695
(((((..............))))	chr2:216230127-216230341(-)$1	1	12	35	21.1989
(((((.((...........)).)	chr4:74310706-74310939(+)$1	1	98	121	20.3827
.((((..............))))	chr2:21234494-21234764(-)$1	1	65	88	21.8331
((((.(................)	chr3:133473253-133473498(+)$1	1	89	112	19.8904
((((((...........))))).	chrX:132670161-132670410(-)$1	1	119	142	19.5031
((.(((.............))).	chr6:160479844-160480079(+)$1	1	207	230	23.4360
.(.(((.............))).	chr4:74280662-74280873(+)$1	1	151	174	23.8283
(((((..............))))	chr2:216272992-216273231(-)$1	1	188	211	22.3790
.(((((...........))))).	chr3:133467184-133467437(+)$1	1	38	61	21.5976
(((.((............))..)	chr2:21246313-21246555(-)$1	1	162	185	21.8913
((((((............).)))	chr2:21236142-21236379(-)$1	1	111	134	23.1714
.(((((............)))))	chr10:7765402-7765609(+)$1	1	71	94	22.5739
..(((((...........)))))	chr2:216274651-216274892(-)$1	1	182	205	19.8237
.(((((...........))))))	chr4:74283726-74283948(+)$1	1	30	53	21.6831
.(((((...........))))))	chr4:74283705-74283920(+)$1	1	51	74	21.6831
((((((.............))))	chr4:74283154-74283398(+)$1	1	28	51	22.7909
((.(((.............))).	chr12:9245960-9246179(-)$1	1	107	130	23.1746
(((.((..............)))	chr2:216245679-216245903(-)$1	1	41	64	21.1814
(((.((.............)).)	chr2:21234210-21234439(-)$1	1	8	31	22.5399
((((((............)))))	chr7:103131079-103131335(-)$1	1	175	198	22.6604
.(((((.............))))	chr6:31963704-31963991(+)$1	1	221	244	22.8953
.(((((............)))))	chr2:216286717-216286943(-)$1	1	201	224	22.2201
((((((............)))))	chr2:21228149-21228365(-)$1	1	58	81	22.0518
((((((...........))))))	chr2:216243810-216244022(-)$1	1	13	36	21.0665
(((((................))	chr4:74283238-74283458(+)$1	1	22	45	20.0654

#PSSM
! : 0.14	f : 0.12	g : 0.08	d : 0.07	c : 0.07	e : 0.07	h : 0.07	: : 0.07	# : 0.05	" : 0.05	[ : 0.05	i : 0.03	b : 0.03	F : 0.01	C : 0.01	% : 0.01	
e : 0.26	d : 0.17	f : 0.16	g : 0.08	h : 0.07	a : 0.05	# : 0.03	i : 0.03	: : 0.03	b : 0.03	c : 0.01	! : 0.01	
e : 0.28	d : 0.16	f : 0.16	[ : 0.12	g : 0.08	h : 0.07	# : 0.03	i : 0.03	c : 0.01	a : 0.01	
e : 0.24	d : 0.14	f : 0.14	c : 0.12	[ : 0.08	g : 0.08	h : 0.05	# : 0.03	i : 0.03	! : 0.01	b : 0.01	
e : 0.24	b : 0.14	c : 0.14	d : 0.12	f : 0.12	g : 0.08	h : 0.05	i : 0.03	! : 0.01	[ : 0.01	
e : 0.23	c : 0.14	b : 0.12	f : 0.12	w : 0.10	a : 0.07	y : 0.03	[ : 0.03	h : 0.03	i : 0.03	g : 0.03	d : 0.01	
v : 0.26	u : 0.19	w : 0.14	t : 0.12	y : 0.07	b : 0.03	e : 0.03	f : 0.03	c : 0.01	x : 0.01	h : 0.01	i : 0.01	d : 0.01	
v : 0.26	u : 0.26	t : 0.17	w : 0.14	y : 0.07	b : 0.03	x : 0.01	i : 0.01	
v : 0.26	u : 0.26	t : 0.23	w : 0.14	y : 0.07	x : 0.01	
v : 0.26	u : 0.26	t : 0.23	w : 0.14	y : 0.07	x : 0.01	
v : 0.26	u : 0.26	t : 0.23	w : 0.14	y : 0.07	x : 0.01	
v : 0.26	u : 0.26	t : 0.23	w : 0.14	y : 0.07	x : 0.01	
v : 0.26	u : 0.26	t : 0.23	w : 0.14	y : 0.07	x : 0.01	
v : 0.26	u : 0.26	t : 0.23	w : 0.14	y : 0.07	x : 0.01	
v : 0.26	u : 0.26	t : 0.23	w : 0.14	y : 0.07	x : 0.01	
v : 0.26	u : 0.26	t : 0.23	w : 0.14	y : 0.07	x : 0.01	
v : 0.26	u : 0.26	t : 0.23	w : 0.14	y : 0.07	x : 0.01	
v : 0.26	u : 0.26	w : 0.14	t : 0.10	e : 0.08	y : 0.07	x : 0.01	c : 0.01	g : 0.01	
v : 0.26	e : 0.17	w : 0.14	u : 0.07	y : 0.07	f : 0.07	t : 0.05	a : 0.03	c : 0.03	g : 0.03	x : 0.01	b : 0.01	
e : 0.24	b : 0.16	c : 0.14	f : 0.10	d : 0.08	y : 0.07	w : 0.03	] : 0.03	g : 0.03	a : 0.01	x : 0.01	h : 0.01	i : 0.01	
e : 0.24	b : 0.16	c : 0.12	f : 0.12	d : 0.08	y : 0.07	g : 0.05	2 : 0.03	h : 0.03	x : 0.01	i : 0.01	] : 0.01	
e : 0.24	f : 0.14	d : 0.12	] : 0.10	c : 0.10	2 : 0.05	g : 0.05	y : 0.03	h : 0.03	i : 0.03	b : 0.03	3 : 0.01	
e : 0.19	d : 0.17	f : 0.14	] : 0.10	h : 0.10	g : 0.08	i : 0.03	a : 0.03	2 : 0.03	3 : 0.01	c : 0.01	b : 0.01	: : 0.01	

#score	1218.7558159565206
#seq	56
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_transcript_m2_run2.txt

#BEAR
eeeeedddd[============!!eeeee^^^^^^^^^	chr14:24904095-24904389(+)$1	294	199	237	13.5007
ee[eeeee[ggggggg####ccc[ffffff[dddd[ap	chr5:137892895-137893113(-)$1	218	65	103	11.9124
ffccca[dddd!!ffffff==========="""hhhhh	chrX:49773401-49773668(+)$1	267	154	192	11.2062
cc:=================[iiiiiiiii"""cccbb	chr1:3477171-3477413(-)$1	242	66	104	15.1297
================dddd$$$$$eeeee"""ccc""	chr1:2325968-2326243(+)$1	275	29	67	14.0635
iiiiiiiii!!ddddaffffff!!bb[bb[bb[dddd[	chr7:1067256-1067553(-)$1	297	35	73	10.7241
[dddd!!ccc!!bb[ggggggg!!a[dddd[a[a!!ff	chr13:99857879-99858162(+)$1	283	24	62	13.3639
[cccgggggggddddggggggg!!bb[a[gggggggqq	chr7:99691399-99691628(-)$1	229	23	61	11.1735
ccc[bb"""==============!!dddddddd!!ccc	chr2:219267280-219267490(+)$1	210	59	97	13.5088
=====================gggggggnnnnnggggg	chr9:96938572-96938800(+)$1	228	65	103	12.6371
ddd[eeeee"""ggggggg!!a[ccceeeeeooooooe	chr19:19415837-19416087(-)$1	250	73	111	11.5500
]===========]gggggggccc[ffffff[ccccccm	chr12:62996887-62997129(+)$1	242	162	200	14.5559
gggggggdddd[bb[=================ffffff	chr13:92003087-92003289(+)$1	202	50	88	12.8702
:======================[ffffff!!ffffff	chr7:130562126-130562337(-)$1	211	35	73	15.6151
iiiiiiiieeeee!!ggggggg!!cccxxxxxxxxxxx	chr5:179046116-179046367(-)$1	251	97	135	12.3725
cc]a333ccc]ccc==========ffffffddddgggg	chr22:22006639-22006873(+)$1	234	46	84	12.1371
ee[cccdddd!!bb[==============[ccc[eeee	chrX:48814596-48814806(-)$1	210	15	53	12.9105
ee[eeeee[ggggggg####ccc[ffffff[dddd[ap	chr5:137892874-137893077(-)$1	203	29	67	11.9124
ggggggccc::ccc[ggggggg"""ffffff####ccc	chr9:4850104-4850347(+)$1	243	99	137	12.0029
[dddd[dddd"""eeeee[bb[dddd[ccc"""cccll	chr14:105912855-105913105(+)$1	250	83	121	11.0068
ffffeeeee####ccc[ggggggg[eeeee!!cccfff	chr4:79766617-79766898(+)$1	281	49	87	12.7505
dddd[ffffff"""hhhhhhhh!!ffffff!!bb!!dd	chr7:887733-888041(+)$1	308	3	41	11.1412
ccc[eeeee[ccc===========!!dddd!!ddddqq	chr17:27188519-27188758(-)$1	239	6	44	13.3955
:============eeeee!!ccc!!bb[bbdddd[ccc	chr20:3897946-3898201(+)$1	255	121	159	11.2054
[eeeee[gggggggiiiiiiiii!!a[ccc"""bb[dd	chr1:248020672-248020920(+)$1	248	154	192	14.3270
iiiiiiiii$$$$$ggggggg[hhhhhhhh####dddd	chr3:99984038-99984333(+)$1	295	216	254	12.5414
[dddd[bb####bb[a[ccc!!bb[eeeee[eeeee[c	chrX:48814219-48814460(-)$1	241	6	44	10.9559
ggeeeee[cccdddd[bb[eeeeeffffff"""a[eee	chr9:139559665-139559873(+)$1	208	122	160	10.6833
ddd"""ccc"""dddd[ggggggg!!dddd"""ccc[e	chrX:118780633-118780854(-)$1	221	47	85	13.0303
b]========================ccciiiiiiiii	chr16:24214390-24214629(+)$1	239	124	162	15.4545
dd====================!!cccccc!!ccc[bb	chr22:19951193-19951406(+)$1	213	79	117	16.4275
neeeeeeeeee[gggggggggggggg[ccc"""ddddl	chr22:42294788-42295098(+)$1	310	129	167	12.7075
gg"""ccc####ffffff####ccc[eeeee####ccc	chrX:151127106-151127364(-)$1	258	151	189	11.6212
[eeeee[=================[cccbb[eeeeerr	chr12:62997405-62997613(+)$1	208	59	97	14.6451
gggggggbb[a[============ffffff!!ddddll	chr6:32938751-32939002(+)$1	251	161	199	15.4469
================[eeeee[ffffffwwwwwwwww	chr1:71533226-71533433(-)$1	207	42	80	12.5588
hhhhhhhh[============$$$$$dddd[bb[dddd	chr3:52302290-52302538(-)$1	248	166	204	12.0355
eeeee[ccc####ggggggg####ccc"""eeeeeccc	chr22:22007444-22007673(+)$1	229	30	68	12.6612
ddddeeeee!!============[ddddccc[cccmmm	chr1:42645821-42646076(-)$1	255	14	52	12.8009
d]ccc=====================eeeee22dddd]	chr9:96938103-96938344(+)$1	241	184	222	13.6961
iiiiiiiii$$$$$hhhhhhhh!!aeeeee"""dddd[	chr1:226033768-226034015(-)$1	247	19	57	13.1633
ddggggggg[==============bb[dddd!!ddddc	chr7:25989443-25989669(-)$1	226	53	91	14.6659
[ccceeeee[dddd!!ggggggg!!dddd"""ddddll	chr14:23426069-23426293(-)$1	224	58	96	12.3283
[ccc[dddd"""a[gggggggdddd[bb[ccc[eeeee	chr17:80211174-80211411(-)$1	237	77	115	11.2844
ddddiiiiiiiii==========[ffffff[bb[dddd	chr1:207975714-207975923(-)$1	209	51	89	15.1151
======]============ddddccc[bb!!ccc[amm	chr16:14397788-14397995(+)$1	207	99	137	13.2142
===========####ggggggg[ffffff!!ddddmmm	chr10:65132678-65132891(-)$1	213	93	131	14.0457
ggggg[=================[ffffff[a[ddddl	chr3:195426224-195426453(+)$1	229	60	98	16.8927
iiiiiiiii"""bb[ggggggg!!ffffff"""ggggg	chr6:17624316-17624592(-)$1	276	79	117	16.4357
e22cccccc"""================[eeeee[eee	chr17:57918458-57918704(+)$1	246	156	194	13.7681
==========!!eeeee"""bb!!a[ffffff[cccpp	chr6:147661883-147662169(+)$1	286	87	125	12.1975
adddd[ffffff!!ggggggg"""ffffff"""fffff	chr7:129410147-129410381(-)$1	234	58	96	12.8169
hhhhhhhh"""ccc[dddd[bb!!ffffff!!ccc###	chr5:179046405-179046655(-)$1	250	24	62	11.7139
eee!!=================bbffffff!!ddddvv	chr13:92003378-92003581(+)$1	203	69	107	15.4481
ggggggg!!bb[bb[hhhhhhhh[ffffff!!ffffff	chr7:129414437-129414672(-)$1	235	57	95	11.3965
Gbb!!ccc[bb####ggggggg!!eeeeeeeeee[a[a	chr12:62997494-62997761(+)$1	267	134	172	11.3844

#otherMatches

#Seq PSSM
cuuguggaaucagaauuacugaauggagcccaggcauu	chr14:24904095-24904389(+)$1	294	199	237	13.5007
CAGUCUUGACAGUGGGAGUUUGGggcugggcgcagugu	chr5:137892895-137893113(-)$1	218	65	103	11.9124
CUUGUCUGCUCCCCCUCUUGAAUCCUUGGAACCUAGGU	chrX:49773401-49773668(+)$1	267	154	192	11.2062
GCCGGGUGACCCUGGAAAUCCAGAGUGGGUGGGGCCAG	chr1:3477171-3477413(-)$1	242	66	104	15.1297
uuuucuuaucuguaaaugagaacaauaagacugacccc	chr1:2325968-2326243(+)$1	275	29	67	14.0635
GCGAUGCAGCAGCCCCCGGGGGAGACACGAGCUCUGAG	chr7:1067256-1067553(-)$1	297	35	73	10.7241
GCAGAGAGAACGGAGUCUGGUGCGCUGAUGAGAGAAGA	chr13:99857879-99858162(+)$1	283	24	62	13.3639
CGUCCGUGGAGGGAAAGGCCUUUUCCCCACUUCUUAAC	chr7:99691399-99691628(-)$1	229	23	61	11.1735
CCGUGCUGUGCUCCCUCGCCCCACCCUGCCCGGGACCC	chr2:219267280-219267490(+)$1	210	59	97	13.5088
GGUAGUAGAUUGUAUAGUUGUGGGGUAGUGAUUUUACC	chr9:96938572-96938800(+)$1	228	65	103	12.6371
ACAGCACAGACUGAAGCGACUGUGGAGUUGUGCCAUGA	chr19:19415837-19416087(-)$1	250	73	111	11.5500
AGCGCUGCUCGCUGCCUCUCGGGGGCAGUCCAGAACCA	chr12:62996887-62997129(+)$1	242	162	200	14.5559
UUUGUUUGCAGUCCUCUGUUAGUUUUGCAUAGUUGCAC	chr13:92003087-92003289(+)$1	202	50	88	12.8702
GCUUCUUCAGGAAGCUGGUUUCAUAUGGUGGUUUAGAU	chr7:130562126-130562337(-)$1	211	35	73	15.6151
GGUGGGGAUGGAUGGUUGGUUGGAUAUGUCACUUUUCU	chr5:179046116-179046367(-)$1	251	97	135	12.3725
GCGGAGGGGCGCGGCCGGGAUCCCGGGGGCCCUCUUUG	chr22:22006639-22006873(+)$1	234	46	84	12.1371
cgaccccgccaacgagccgccgccgcccgggccgaugc	chrX:48814596-48814806(-)$1	210	15	53	12.9105
CAGUCUUGACAGUGGGAGUUUGGggcugggcgcagugu	chr5:137892874-137893077(-)$1	203	29	67	11.9124
UUUCACGUGCUUGCAUACUUGGAGAUCAUCAUAUGGCC	chr9:4850104-4850347(+)$1	243	99	137	12.0029
AUCCUGCCACCGAUGCCUUGUUCCUGAGCCUUUGCUGG	chr14:105912855-105913105(+)$1	250	83	121	11.0068
CUUUGUAAUGUUAUACUGGAAAGCUCUGGAAUGGAAAU	chr4:79766617-79766898(+)$1	281	49	87	12.7505
GCAGUACCCUCUCCGGGAUCCCCUGGGGGUUACUCCGC	chr7:887733-888041(+)$1	308	3	41	11.1412
CUGCGAGGGAGCUGUAGAGCAGGGAGCAGGAAGCUGUG	chr17:27188519-27188758(-)$1	239	6	44	13.3955
CGGAAGCUGGGAGAAGACUGAGCAGGCCGAGGGGUGCC	chr20:3897946-3898201(+)$1	255	121	159	11.2054
gcggcgAUGCGCGCGGCACGGCGAGGACCUGAGCCGCU	chr1:248020672-248020920(+)$1	248	154	192	14.3270
AUUCUUGUAAAAAUGCUUAUAGUUAGUUUUAAGUGAUU	chr3:99984038-99984333(+)$1	295	216	254	12.5414
GCGGGCGUGGUGGUGGGUGUGGGUGGUGCCGUAGGCGU	chrX:48814219-48814460(-)$1	241	6	44	10.9559
AGCUCAGUGCUAACCUGCGCCGGGCGCCUACCGCGCGG	chr9:139559665-139559873(+)$1	208	122	160	10.6833
CCUCAGGACCUGGGCUUGGGUGGUAGGAGGAAUUGGUG	chrX:118780633-118780854(-)$1	221	47	85	13.0303
ucgaccucccaggcuuaagcaauccuccugcucgagug	chr16:24214390-24214629(+)$1	239	124	162	15.4545
GAAGGACAAGGUGUGCAUGCCUGACCCGUUGUCAGACC	chr22:19951193-19951406(+)$1	213	79	117	16.4275
AAGUCGGGGGUGAGGGCACCAUGGAGAACUCAAGUUGG	chr22:42294788-42295098(+)$1	310	129	167	12.7075
CUGCCUCUUGGUUUUCUGCACCUCAGCUUUUCCCGGAU	chrX:151127106-151127364(-)$1	258	151	189	11.6212
CCUGGCUGAGGUAGUAGUUUGUGCUGUUGGUCGGGUUG	chr12:62997405-62997613(+)$1	208	59	97	14.6451
UCCCUCCCAGGACUUGCUUUUUCUGCUCUGAGCCGGAC	chr6:32938751-32939002(+)$1	251	161	199	15.4469
ACUUUCCAAAGAAUUCUCCUUUUGGGCUUUCUGGUUUU	chr1:71533226-71533433(-)$1	207	42	80	12.5588
GAGGUAGUAGUUUGUACAGUUUGAGGGUCUAUGAUACC	chr3:52302290-52302538(-)$1	248	166	204	12.0355
CAGGCCUGGGCCUCUGGGGUCAGAGGGCACCCUUUCCC	chr22:22007444-22007673(+)$1	229	30	68	12.6612
UGGUACAAGAAGAGCAUGGGAAGGUGGGCAUUCUGUAC	chr1:42645821-42646076(-)$1	255	14	52	12.8009
GAGAUAACUAUACAAUCUACUGUCUUUCCUAACGUGAU	chr9:96938103-96938344(+)$1	241	184	222	13.6961
AUCCAGCCUCUCUCACCUCUUCAGGGCUGAGUGCAUGA	chr1:226033768-226034015(-)$1	247	19	57	13.1633
UUGGUCUUUUGAGGCAAAGUUCUGAGACACUCCGACUC	chr7:25989443-25989669(-)$1	226	53	91	14.6659
UCCGGAGCCCCGGCGCGGGCGGGUUCUGGGGUGUAGAC	chr14:23426069-23426293(-)$1	224	58	96	12.3283
GCCUAGGCCUGUGGAGGGUGGAGUGUGGAGGGUUGCUG	chr17:80211174-80211411(-)$1	237	77	115	11.2844
UCUUCUUCUGGAAGCUGGUUUCACAUGGUGGCUUAGAU	chr1:207975714-207975923(-)$1	209	51	89	15.1151
GUCCCGCUUUUGGGGUCAUUCUGGACAGCGAGGGACUC	chr16:14397788-14397995(+)$1	207	99	137	13.2142
CUGGGUUAGGGCCCUGGCUCCAUCUCCUUUAGGAAAAC	chr10:65132678-65132891(-)$1	213	93	131	14.0457
uaggugggugcaaagguaauugcaguuuuucccauuau	chr3:195426224-195426453(+)$1	229	60	98	16.8927
UUGGGCUUGCAAGGCUAGCUUUGAAGUGCAUUUUCUGA	chr6:17624316-17624592(-)$1	276	79	117	16.4357
GCUGUACCACCUUGUCGGGUAGCUUAUCAGACUGAUGU	chr17:57918458-57918704(+)$1	246	156	194	13.7681
uuuaucaguguugauaauguuauuggaaggauaguucu	chr6:147661883-147662169(+)$1	286	87	125	12.1975
GCCUCCCCCCGUUUUUGGCAAUGGUAGAACUCACACUG	chr7:129410147-129410381(-)$1	234	58	96	12.8169
UUUUUUAAUAUAUACUGUACCAUGGGUGUGUUAAGAAU	chr5:179046405-179046655(-)$1	250	24	62	11.7139
CUGUUCUAUGGUUAGUUUUGCAGGUUUGCAUCCAGCUG	chr13:92003378-92003581(+)$1	203	69	107	15.4481
UCUGCUUGGCCGAUUUUGGCACUAGCACAUUUUUGCUU	chr7:129414437-129414672(-)$1	235	57	95	11.3965
CGCGAAGCCUcggcgcccggccggcgcggccACCACGG	chr12:62997494-62997761(+)$1	267	134	172	11.3844

#DB
(((((((((.((((((((((((..(((((.........	chr14:24904095-24904389(+)$1	1	199	237	13.5007
((.(((((.(((((((....(((.((((((.((((.(.	chr5:137892895-137893113(-)$1	1	65	103	11.9124
((((((.((((..(((((((((((((((((...(((((	chrX:49773401-49773668(+)$1	1	154	192	11.2062
)).(((((((((((((((((.(((((((((...(((((	chr1:3477171-3477413(-)$1	1	66	104	15.1297
((((((((((((((((((((.....(((((...(((..	chr1:2325968-2326243(+)$1	1	29	67	14.0635
(((((((((..(((((((((((..((.((.((.((((.	chr7:1067256-1067553(-)$1	1	35	73	10.7241
.((((..(((..((.(((((((..(.((((.(.(..((	chr13:99857879-99858162(+)$1	1	24	62	13.3639
.(((((((((((((((((((((..((.(.(((((((..	chr7:99691399-99691628(-)$1	1	23	61	11.1735
(((.((...((((((((((((((..((((((((..(((	chr2:219267280-219267490(+)$1	1	59	97	13.5088
((((((((((((((((((((((((((((.....)))))	chr9:96938572-96938800(+)$1	1	65	103	12.6371
(((.(((((...(((((((..(.((((((((......)	chr19:19415837-19416087(-)$1	1	73	111	11.5500
.))))))))))).)))))))(((.((((((.((((((.	chr12:62996887-62997129(+)$1	1	162	200	14.5559
(((((((((((.((.(((((((((((((((((((((((	chr13:92003087-92003289(+)$1	1	50	88	12.8702
.((((((((((((((((((((((.((((((..((((((	chr7:130562126-130562337(-)$1	1	35	73	15.6151
(((((((((((((..(((((((..(((...........	chr5:179046116-179046367(-)$1	1	97	135	12.3725
)).)...))).)))))))))))))((((((((((((((	chr22:22006639-22006873(+)$1	1	46	84	12.1371
((.(((((((..((.((((((((((((((.(((.((((	chrX:48814596-48814806(-)$1	1	15	53	12.9105
((.(((((.(((((((....(((.((((((.((((.(.	chr5:137892874-137893077(-)$1	1	29	67	11.9124
)))))))))..(((.(((((((...((((((....(((	chr9:4850104-4850347(+)$1	1	99	137	12.0029
.((((.((((...(((((.((.((((.(((...(((..	chr14:105912855-105913105(+)$1	1	83	121	11.0068
(((((((((....(((.(((((((.(((((..((((((	chr4:79766617-79766898(+)$1	1	49	87	12.7505
((((.((((((...((((((((..((((((..((..((	chr7:887733-888041(+)$1	1	3	41	11.1412
(((.(((((.((((((((((((((..((((..((((..	chr17:27188519-27188758(-)$1	1	6	44	13.3955
.(((((((((((((((((..(((..((.((((((.(((	chr20:3897946-3898201(+)$1	1	121	159	11.2054
.(((((.((((((((((((((((..(.(((...((.((	chr1:248020672-248020920(+)$1	1	154	192	14.3270
(((((((((.....(((((((.((((((((....((((	chr3:99984038-99984333(+)$1	1	216	254	12.5414
.((((.((....((.(.(((..((.(((((.(((((.(	chrX:48814219-48814460(-)$1	1	6	44	10.9559
))(((((.(((((((.((.(((((((((((...(.(((	chr9:139559665-139559873(+)$1	1	122	160	10.6833
(((...(((...((((.(((((((..((((...(((.(	chrX:118780633-118780854(-)$1	1	47	85	13.0303
).))))))))))))))))))))))))))))))))))))	chr16:24214390-24214629(+)$1	1	124	162	15.4545
))((((((((((((((((((((..((((((..(((.((	chr22:19951193-19951406(+)$1	1	79	117	16.4275
.)))))(((((.((((((((((((((.(((...((((.	chr22:42294788-42295098(+)$1	1	129	167	12.7075
((...(((....((((((....(((.(((((....(((	chrX:151127106-151127364(-)$1	1	151	189	11.6212
.(((((.(((((((((((((((((.(((((.(((((..	chr12:62997405-62997613(+)$1	1	59	97	14.6451
)))))))((.(.((((((((((((((((((..((((..	chr6:32938751-32939002(+)$1	1	161	199	15.4469
((((((((((((((((.(((((.((((((.........	chr1:71533226-71533433(-)$1	1	42	80	12.5588
((((((((.((((((((((((.....((((.((.((((	chr3:52302290-52302538(-)$1	1	166	204	12.0355
(((((.(((....(((((((....(((...((((((((	chr22:22007444-22007673(+)$1	1	30	68	12.6612
))))(((((..((((((((((((.(((((((.(((...	chr1:42645821-42646076(-)$1	1	14	52	12.8009
).)))))))))))))))))))))))))))))..)))).	chr9:96938103-96938344(+)$1	1	184	222	13.6961
(((((((((.....((((((((..((((((...((((.	chr1:226033768-226034015(-)$1	1	19	57	13.1633
))(((((((.((((((((((((((((.((((..(((((	chr7:25989443-25989669(-)$1	1	53	91	14.6659
.((((((((.((((..(((((((..((((...((((..	chr14:23426069-23426293(-)$1	1	58	96	12.3283
.(((.((((...(.(((((((((((.((.(((.(((((	chr17:80211174-80211411(-)$1	1	77	115	11.2844
(((((((((((((((((((((((.((((((.((.((((	chr1:207975714-207975923(-)$1	1	51	89	15.1151
)))))).))))))))))))(((((((.((..(((.(..	chr16:14397788-14397995(+)$1	1	99	137	13.2142
(((((((((((....(((((((.((((((..((((...	chr10:65132678-65132891(-)$1	1	93	131	14.0457
(((((.(((((((((((((((((.((((((.(.((((.	chr3:195426224-195426453(+)$1	1	60	98	16.8927
(((((((((...((.(((((((..((((((...(((((	chr6:17624316-17624592(-)$1	1	79	117	16.4357
)..)))(((...((((((((((((((((.(((((.(((	chr17:57918458-57918704(+)$1	1	156	194	13.7681
((((((((((..(((((...((..(.((((((.(((..	chr6:147661883-147662169(+)$1	1	87	125	12.1975
(((((.((((((..(((((((...((((((...(((((	chr7:129410147-129410381(-)$1	1	58	96	12.8169
((((((((...(((.((((.((..((((((..(((...	chr5:179046405-179046655(-)$1	1	24	62	11.7139
(((..(((((((((((((((((((((((((..((((..	chr13:92003378-92003581(+)$1	1	69	107	15.4481
(((((((..((.((.((((((((.((((((..((((((	chr7:129414437-129414672(-)$1	1	57	95	11.3965
)((..(((.((....(((((((..((((((((((.(.(	chr12:62997494-62997761(+)$1	1	134	172	11.3844

#PSSM
[ : 0.14	d : 0.14	e : 0.12	g : 0.12	= : 0.10	i : 0.08	c : 0.07	f : 0.03	: : 0.03	h : 0.03	] : 0.01	b : 0.01	n : 0.01	a : 0.01	G : 0.01	
d : 0.19	e : 0.16	= : 0.16	c : 0.12	g : 0.12	i : 0.08	f : 0.03	] : 0.03	h : 0.03	2 : 0.01	b : 0.01	
= : 0.19	d : 0.16	e : 0.12	c : 0.12	g : 0.10	i : 0.08	[ : 0.05	h : 0.03	: : 0.01	] : 0.01	f : 0.01	" : 0.01	2 : 0.01	b : 0.01	
= : 0.21	e : 0.14	c : 0.12	d : 0.12	g : 0.10	i : 0.08	[ : 0.05	" : 0.03	h : 0.03	! : 0.03	a : 0.01	f : 0.01	
e : 0.23	= : 0.21	g : 0.12	i : 0.10	c : 0.07	d : 0.07	[ : 0.03	" : 0.03	h : 0.03	! : 0.03	b : 0.01	3 : 0.01	
= : 0.24	e : 0.19	i : 0.10	g : 0.10	[ : 0.08	c : 0.07	d : 0.03	h : 0.03	a : 0.01	! : 0.01	b : 0.01	3 : 0.01	f : 0.01	" : 0.01	
= : 0.24	e : 0.16	i : 0.10	c : 0.10	g : 0.08	d : 0.07	[ : 0.05	f : 0.03	h : 0.03	! : 0.01	" : 0.01	3 : 0.01	b : 0.01	] : 0.01	
= : 0.28	e : 0.14	c : 0.14	d : 0.10	i : 0.10	g : 0.05	f : 0.03	b : 0.03	h : 0.03	" : 0.01	[ : 0.01	! : 0.01	
= : 0.28	c : 0.12	e : 0.12	d : 0.10	i : 0.08	[ : 0.07	g : 0.05	" : 0.03	f : 0.03	# : 0.03	b : 0.01	! : 0.01	
= : 0.32	" : 0.10	[ : 0.08	g : 0.07	d : 0.07	# : 0.07	c : 0.05	! : 0.03	e : 0.03	f : 0.03	$ : 0.03	b : 0.03	: : 0.01	i : 0.01	
= : 0.33	" : 0.12	! : 0.08	g : 0.07	# : 0.07	d : 0.05	e : 0.03	f : 0.03	c : 0.03	$ : 0.03	b : 0.03	] : 0.01	: : 0.01	a : 0.01	i : 0.01	
= : 0.33	" : 0.12	# : 0.10	! : 0.07	d : 0.07	[ : 0.07	c : 0.07	g : 0.05	$ : 0.03	e : 0.01	i : 0.01	f : 0.01	
= : 0.35	b : 0.10	g : 0.08	d : 0.08	c : 0.07	# : 0.07	! : 0.03	e : 0.03	" : 0.03	$ : 0.03	] : 0.01	f : 0.01	a : 0.01	i : 0.01	
= : 0.37	g : 0.12	b : 0.10	d : 0.08	c : 0.07	e : 0.05	f : 0.03	! : 0.03	$ : 0.03	# : 0.03	" : 0.01	[ : 0.01	
= : 0.39	g : 0.16	[ : 0.14	d : 0.07	e : 0.05	f : 0.03	! : 0.03	h : 0.03	# : 0.03	c : 0.01	i : 0.01	
= : 0.42	g : 0.28	e : 0.05	h : 0.05	f : 0.03	a : 0.03	d : 0.03	c : 0.01	i : 0.01	[ : 0.01	! : 0.01	
= : 0.39	g : 0.26	[ : 0.07	f : 0.05	e : 0.05	h : 0.05	# : 0.03	d : 0.03	i : 0.01	b : 0.01	
= : 0.39	g : 0.30	f : 0.05	e : 0.05	h : 0.05	# : 0.03	d : 0.03	i : 0.01	c : 0.01	b : 0.01	" : 0.01	
= : 0.39	g : 0.30	# : 0.05	h : 0.05	f : 0.03	d : 0.03	[ : 0.03	! : 0.01	i : 0.01	c : 0.01	e : 0.01	" : 0.01	
= : 0.39	g : 0.28	# : 0.05	h : 0.05	d : 0.03	! : 0.03	e : 0.03	f : 0.01	b : 0.01	i : 0.01	c : 0.01	" : 0.01	[ : 0.01	
= : 0.37	g : 0.24	c : 0.07	b : 0.05	h : 0.05	! : 0.03	e : 0.03	# : 0.03	[ : 0.01	$ : 0.01	f : 0.01	i : 0.01	d : 0.01	
= : 0.33	g : 0.21	c : 0.07	h : 0.05	i : 0.03	$ : 0.03	[ : 0.03	e : 0.03	# : 0.03	d : 0.03	b : 0.03	f : 0.01	a : 0.01	! : 0.01	" : 0.01	
= : 0.28	! : 0.21	c : 0.08	g : 0.08	[ : 0.05	d : 0.05	i : 0.03	$ : 0.03	" : 0.03	h : 0.03	b : 0.03	e : 0.01	# : 0.01	
! : 0.28	= : 0.19	[ : 0.14	g : 0.07	c : 0.05	$ : 0.03	" : 0.03	d : 0.03	b : 0.03	f : 0.03	i : 0.01	h : 0.01	e : 0.01	# : 0.01	
f : 0.30	= : 0.10	! : 0.10	c : 0.10	b : 0.05	a : 0.05	d : 0.05	[ : 0.05	e : 0.03	$ : 0.03	g : 0.03	i : 0.01	" : 0.01	h : 0.01	
f : 0.32	e : 0.10	= : 0.10	c : 0.10	b : 0.07	[ : 0.07	d : 0.07	g : 0.03	! : 0.03	i : 0.01	a : 0.01	h : 0.01	$ : 0.01	
f : 0.33	e : 0.16	[ : 0.12	d : 0.12	c : 0.08	= : 0.07	b : 0.03	i : 0.01	g : 0.01	h : 0.01	
f : 0.33	e : 0.16	d : 0.14	c : 0.10	= : 0.07	b : 0.05	i : 0.01	a : 0.01	g : 0.01	x : 0.01	[ : 0.01	h : 0.01	" : 0.01	
f : 0.33	e : 0.16	d : 0.12	c : 0.10	b : 0.07	= : 0.05	[ : 0.05	i : 0.01	n : 0.01	x : 0.01	h : 0.01	" : 0.01	
f : 0.30	e : 0.16	d : 0.10	c : 0.10	= : 0.03	i : 0.03	[ : 0.03	b : 0.03	" : 0.03	! : 0.03	^ : 0.01	g : 0.01	n : 0.01	x : 0.01	h : 0.01	w : 0.01	
" : 0.21	! : 0.19	[ : 0.16	e : 0.10	d : 0.07	c : 0.05	f : 0.03	^ : 0.01	b : 0.01	g : 0.01	n : 0.01	= : 0.01	x : 0.01	# : 0.01	i : 0.01	w : 0.01	
" : 0.21	! : 0.17	d : 0.10	e : 0.08	c : 0.07	b : 0.05	# : 0.05	a : 0.03	^ : 0.01	g : 0.01	n : 0.01	o : 0.01	= : 0.01	x : 0.01	i : 0.01	w : 0.01	[ : 0.01	2 : 0.01	f : 0.01	
" : 0.19	d : 0.17	c : 0.12	[ : 0.08	e : 0.08	f : 0.05	# : 0.05	b : 0.05	^ : 0.01	g : 0.01	n : 0.01	o : 0.01	x : 0.01	i : 0.01	w : 0.01	2 : 0.01	! : 0.01	
d : 0.26	c : 0.19	e : 0.10	f : 0.07	g : 0.05	[ : 0.05	# : 0.05	a : 0.03	b : 0.03	^ : 0.01	h : 0.01	! : 0.01	o : 0.01	x : 0.01	i : 0.01	w : 0.01	
d : 0.28	c : 0.17	e : 0.08	[ : 0.08	g : 0.07	f : 0.07	! : 0.05	# : 0.03	^ : 0.01	h : 0.01	o : 0.01	x : 0.01	b : 0.01	i : 0.01	w : 0.01	
d : 0.23	c : 0.19	e : 0.10	f : 0.08	[ : 0.07	g : 0.07	! : 0.03	m : 0.03	a : 0.03	^ : 0.01	h : 0.01	o : 0.01	x : 0.01	i : 0.01	w : 0.01	# : 0.01	
d : 0.19	f : 0.10	c : 0.10	e : 0.07	g : 0.05	l : 0.05	[ : 0.05	m : 0.05	a : 0.03	b : 0.03	q : 0.03	^ : 0.01	h : 0.01	" : 0.01	o : 0.01	x : 0.01	i : 0.01	r : 0.01	w : 0.01	p : 0.01	# : 0.01	v : 0.01	
c : 0.12	f : 0.10	e : 0.10	l : 0.08	d : 0.08	m : 0.07	p : 0.05	g : 0.05	b : 0.03	[ : 0.03	q : 0.03	^ : 0.01	h : 0.01	" : 0.01	x : 0.01	i : 0.01	r : 0.01	w : 0.01	] : 0.01	# : 0.01	v : 0.01	a : 0.01	

#score	730.1122133251193
#seq	56
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_CDS_m1_run2.txt

#BEAR
ggggg[ddddabb[ddddoooooodddd22bb]a]dddd]	chr19:1012285-1012544(-)$1	259	125	165	14.0236
ggggggg[============mmmm============]ggg	chr2:220397433-220397717(+)$1	284	66	106	14.3409
==========="""eeeeeooooooeeeee22========	chr7:100285132-100285388(-)$1	256	158	198	16.8396
gggggg####dddd[acccmmmmccc333a]dddd22ggg	chr20:3735047-3735375(-)$1	328	161	201	11.9833
ggggg[a!!ccc[ccccccooooooccc]ccc]cccaggg	chr17:80018507-80018758(-)$1	251	188	228	18.1647
a===========[ccc[cccnnnnnccc]ccc]=======	chr22:20073834-20074105(+)$1	271	129	169	15.1566
hhhhheeeee[ffffff[aooooooa]ffffff333eeee	chr7:100173274-100173506(-)$1	232	115	155	13.7514
eeeee[ccc[iiiiiiiiiooooooiiiiiiiiiccc22e	chr19:617758-618088(-)$1	330	103	143	15.1895
fffff[aeeeee[ffffffooooooffffff4444eeeee	chr3:48664368-48664615(-)$1	247	70	110	13.9997
:dddd[dddd[bb"""cccooooooccc]bb]dddddddd	chr17:80016436-80016716(-)$1	280	182	222	13.2467
=========[bb[bb[bbrrrrrrrrrbb]bb]bb=====	chr8:145111219-145111439(-)$1	220	47	87	11.6433
hhhhh[ddddabb[ddddoooooodddd22bb]a]dddd]	chr19:1012140-1012428(-)$1	288	9	49	13.2776
c:ffffff!!a[dddd[bboooooobb]dddd]a]fffff	chr16:72138181-72138487(+)$1	306	98	138	12.5304
a[ccc[bb[dddd[eeeeeooooooeeeee]dddd]bb]c	chr3:9862058-9862337(+)$1	279	76	116	14.0211
hhhhhhhh[ffffff"""aooooooa]ffffff]hhhhhh	chrX:153178614-153178873(-)$1	259	63	103	13.1678
fffff:ccc"""ddddcccooooooccc]dddd333ccc:	chr7:100174280-100174518(-)$1	238	130	170	14.1322
Gffffff[dddd####cccooooooccc4444dddd333f	chr10:3167186-3167492(+)$1	306	50	90	15.3442
[cccbb"""dddd[ccc!!ccclllccc]ccc]dddd444	chr14:24032936-24033268(-)$1	332	66	106	11.4480
gggggg"""bb!!a[ddddoooooodddd]a22bbggggg	chr17:79180507-79180823(-)$1	316	1	41	15.9162
gg[ggggggg[a[bb[cccooooooccc]bb]a22ggggg	chr19:18547547-18547869(-)$1	322	135	175	17.1308
==ccc[ccc[a!!gggggggnnnnnggggggg22a333cc	chrX:152936766-152937010(-)$1	244	48	88	13.2108
eee[dddd[bb[a"""cccooooooccca]bbdddd]eee	chr19:18548452-18548753(-)$1	301	139	179	14.8533
b[ccc[eeeee!!ccc[cccmmmmcccccc]eeeee]ccc	chr10:49659518-49659795(-)$1	277	231	271	12.1315
cbb"""eeeee!!eeeeebboooooobb]eeeee]eeeee	chr8:21926769-21927067(+)$1	298	167	207	12.5545
ggggggg[dddd[ddddrrrrrrrrrdddddddd22gggg	chr12:125270542-125270852(-)$1	310	62	102	11.8632
=======hhhhhhhhddddoooooodddd]hhhhhhhhcc	chr11:431634-431926(-)$1	292	104	144	13.7322
[hhhhhhhh!!ccc[ddddooooooddddccc4444hhhh	chr6:33179056-33179343(+)$1	287	14	54	14.6184
:ccc[bb[ffffff!!cccoooooocccffffffbb]ccc	chr1:44820431-44820689(-)$1	258	206	246	13.6016
ccc!!dddd[bb!!ddddoooooodddd22bbdddd4444	chr10:70525593-70525890(+)$1	297	85	125	13.5515
ggggggg$$$$$ccc[cccooooooccc333ccc]ggggg	chr1:52825790-52826170(-)$1	380	17	57	17.0385
===[ccc[bb"""a[ddddoooooodddd]a22bb]ccc=	chr2:242447752-242448020(-)$1	268	115	155	15.8026
iiiiiieeeee!!a[eeeeeooooooeeeeea]eeeee33	chr15:75651367-75651678(-)$1	311	115	155	14.6656
!bb!!ffffffdddd[cccooooooccc333dddd22fff	chr21:45745708-45745955(+)$1	247	142	182	15.0513
gggggg####bb[cccrrrrrrrrrccc]bbggggggg:c	chr6:31938137-31938452(-)$1	315	204	244	12.0297
iiiii[bbeeeeebba[bboooooobb]a]bb22eeeee2	chr16:841813-842062(+)$1	249	151	191	13.5635
b[a[ccc!!==========oooooo==========22ccc	chr21:46912889-46913211(+)$1	322	39	79	17.4532
c[ccc####==========mmmm==========333cccc	chr3:52561265-52561552(-)$1	287	50	90	13.9485
fffff[accc[a[cccssssssssssccc]a]ccc333a]	chr16:89805344-89805606(+)$1	262	168	208	11.1497
gg!!ccc"""a[ccc"""bbmmmmbb333ccc]a333ccc	chr9:139563976-139564202(+)$1	226	9	49	12.5062
ccffffffgggggggddddooooooddddffffff[cccq	chr11:64124702-64124965(+)$1	263	134	174	13.1893
iiiiiiiii[eeeee[cccmmmmccceeeee]iiiiiiii	chr8:145693144-145693379(+)$1	235	52	92	12.5411
!============="""bblllbb333=============	chr16:2867269-2867549(+)$1	280	114	154	13.1244
!!ccc[dddd####eeeeeooooooeeeee22ddddccc]	chr8:145011298-145011633(-)$1	335	24	64	15.0422
iiiii####eeeee[eeeeeaooooooa]eeeee]eeeee	chr9:139905445-139905712(-)$1	267	159	199	13.2187
===[ccc!!ccceeeeecccnnnnnccc]eeeee22ccc2	chr7:100283494-100283744(-)$1	250	166	206	13.1048
c####ffffff!!dddd[a[aooooooa]addddffffff	chrX:153677138-153677390(+)$1	252	19	59	12.1702
b[==========!!ddddoooooodddd]==========]	chr15:75650848-75651135(-)$1	287	31	71	16.9595
:eeeeegggggggcccrrrrrrrrrccc]ggggggg4444	chr1:988678-988947(+)$1	269	56	96	11.0692
=======ffffffffffffooooooffffff333ffffff	chr9:139564580-139564835(+)$1	255	82	122	14.2138
[bb[hhhhhhhh!!eeeeeooooooeeeee]hhhhhhhh]	chrX:64754372-64754676(-)$1	304	83	123	13.2092
cc[ccc[bbccc[bb!!cccnnnnnccc22bb]ccc]bb]	chr19:13189414-13189688(+)$1	274	88	128	12.0237
e"""hhhhhhhh[ffffffooooooffffff]hhhhhhhh	chr11:292861-293205(+)$1	344	48	88	12.5847
c[ccc[ccc!!dddd[cccooooooccc]dddd22ccc22	chrX:151123176-151123419(-)$1	243	100	140	16.5355
hhhhhhggggggg"""cccooooooccc666666gggggg	chr5:176980941-176981210(-)$1	269	72	112	13.9883
ffccc!!ccc[dddd[cccooooooccc333ddddccc22	chr1:46034446-46034709(+)$1	263	5	45	16.4599

#otherMatches

#Seq PSSM
CUCCCCUCCUCCCUCGGGUCUCCUCCUGCUGGUGCGGGAC	chr19:1012285-1012544(-)$1	259	125	165	14.0236
aaaugugugcauaugugugugcaugcauguaugugcuuac	chr2:220397433-220397717(+)$1	284	66	106	14.3409
UCCCUGUCAGUGAACAGCGUGGCUGUGCUGAGGCUGAUGG	chr7:100285132-100285388(-)$1	256	158	198	16.8396
CGGGGAGGCUGGGGGAGGUGCUGACCAAUUGCCCCUGUCC	chr20:3735047-3735375(-)$1	328	161	201	11.9833
GCCCAGCCAGCCCUGGGCGGGGAUGUGCACCAAGGUGUGG	chr17:80018507-80018758(-)$1	251	188	228	18.1647
CAUGCUUGUCCCUUUGGCGGGAGUGUUGGUGACGGGGUAG	chr22:20073834-20074105(+)$1	271	129	169	15.1566
CCUCAAGGCUCGGAAGAAUGUGGAGAGUUUUCUAGAAGCC	chr7:100173274-100173506(-)$1	232	115	155	13.7514
GGGGUGGGGCGAGGCCUGCAGGAGGGUGGGCUUCCCUGGA	chr19:617758-618088(-)$1	330	103	143	15.1895
GCCAGUCCUGCCUUCACUCUCUCAUGGGUGGCCCUGGCAG	chr3:48664368-48664615(-)$1	247	70	110	13.9997
GUGGCAUGGAUGCCUCAGGACGGCCCCUUGCUUCCAGCCA	chr17:80016436-80016716(-)$1	280	182	222	13.2467
CGGCCGGUGGUCGUGGACGAUGUGCGAGUGCGGGGCACCG	chr8:145111219-145111439(-)$1	220	47	87	11.6433
CUCCCCUCCUCCCUCGGGUCUCCUCCUGCUGGUGCGGGAC	chr19:1012140-1012428(-)$1	288	9	49	13.2776
UUGUCAGCUUUGGCUUGUGUUUCCUCGGGGGUGGUGCUGA	chr16:72138181-72138487(+)$1	306	98	138	12.5304
AGGUAAGUGACAGGCCUUAGGACAAUGGGGGCUGUGGCAU	chr3:9862058-9862337(+)$1	279	76	116	14.0211
AGGGAGGGGCUCAAGCCAGGGCUAACACUUGGGGCUCUUC	chrX:153178614-153178873(-)$1	259	63	103	13.1678
CUCCACGGCCACUUGGCUCCAUUCAGAGACCAAACAGCUU	chr7:100174280-100174518(-)$1	238	130	170	14.1322
UGGCAGGUGAGCACCCGGCACCCCCGCUAACCGCUUGGCC	chr10:3167186-3167492(+)$1	306	50	90	15.3442
GUGGCCAAGACUCGAGCCAGUUUAGAGCAGCUGGAGUAAG	chr14:24032936-24033268(-)$1	332	66	106	11.4480
GGUGUCAAGCUUAGAUCUGACAUGGCAGACCCCAGGACAU	chr17:79180507-79180823(-)$1	316	1	41	15.9162
GGAGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUC	chr19:18547547-18547869(-)$1	322	135	175	17.1308
CUGGGGGACCCUAGACAGCCGGGAAGGCUGUUGUGCCCGU	chrX:152936766-152937010(-)$1	244	48	88	13.2108
AGAAGGGCACGGGACCCGGGAUUCACUGCGCGGCCUGUCU	chr19:18548452-18548753(-)$1	301	139	179	14.8533
gugacguggggcagccgagagaguucuggcaucucagguc	chr10:49659518-49659795(-)$1	277	231	271	12.1315
CGGACAGCCGGUCGCCUGGAAUCAUCUCUCAGGCCUCGGC	chr8:21926769-21927067(+)$1	298	167	207	12.5545
CAGCAGUCCUGCGUCUCUGCCGGAGUGGGAGCGGUCACUG	chr12:125270542-125270852(-)$1	310	62	102	11.8632
GGCCCUGGGGUGGGACCCUGGGAUGGGGGCUCUCACUCUC	chr11:431634-431926(-)$1	292	104	144	13.7322
CCUGCUCCCAAGCGACCCCGUGGAGGGGGCGCAGGGGGGA	chr6:33179056-33179343(+)$1	287	14	54	14.6184
UGCAACCUGGGGUGCUGGCCCAUGUGCUUACCCUGGAUGC	chr1:44820431-44820689(-)$1	258	206	246	13.6016
GCCAGCGUCGAGAAAGAAGAUAUAUUUUGCCUGAUGAACC	chr10:70525593-70525890(+)$1	297	85	125	13.5515
CAGUGCCAAGGAGGCAGGCGAAGCAGCCAAAGCCAGGCGC	chr1:52825790-52826170(-)$1	380	17	57	17.0385
GGGCGCUGCAgagcgggccgggggaggccgggauggagcc	chr2:242447752-242448020(-)$1	268	115	155	15.8026
GUUGGGGUGGGAAGACUUUUGGUGUGGGAAGCCCCUACAG	chr15:75651367-75651678(-)$1	311	115	155	14.6656
CUCCAACCCCCUUUGACCGGAACUAUGGGACCAAGCUGGG	chr21:45745708-45745955(+)$1	247	142	182	15.0513
CUCCUGAAAUGGUGGGCUCAGUCAUUCCUCCCAGGGGUCC	chr6:31938137-31938452(-)$1	315	204	244	12.0297
CCGUCUCUGGCUCGCCUUCUGUCCUGACGUGUUUGAGUUC	chr16:841813-842062(+)$1	249	151	191	13.5635
CCAGAGUGAGGCUGGGGCCGCGAGGGGCCCUGGUCGGGCU	chr21:46912889-46913211(+)$1	322	39	79	17.4532
UGCUGGCAUGGGUCCACUUGAGCAGGUGGGCCUUUACGGA	chr3:52561265-52561552(-)$1	287	50	90	13.9485
UGGAGGUGGGACUGGCCCUUGCACCUGCCUGACCCUUGAG	chr16:89805344-89805606(+)$1	262	168	208	11.1497
GGACUCUAGAUGCCCAGCAGGUGACUAAGGGGGAGUAGGA	chr9:139563976-139564202(+)$1	226	9	49	12.5062
UCUGGGGGAUCCCCCAGCUGAAGGAGGCUGGCAGGAGUUG	chr11:64124702-64124965(+)$1	263	134	174	13.1893
UGGAGGGGGUGCUUCAGGUGAGUGCCGAGGUUUCCUCUCC	chr8:145693144-145693379(+)$1	235	52	92	12.5411
AGGACGGGAGGUGGAGGCCGCGGGGAGUCACUUCUUGUCU	chr16:2867269-2867549(+)$1	280	114	154	13.1244
UCCCGAGCCCUGAUGGGCCUGGCCUGGCCCCUGGGCCGGU	chr8:145011298-145011633(-)$1	335	24	64	15.0422
GUUUGACAAGAUGAAGUCCCCGUUCGAGUGGGACAUUGUC	chr9:139905445-139905712(-)$1	267	159	199	13.2187
AGCGGGCCUGGGGCUGGGCCGGGCAGGCACUGGUGUUCUU	chr7:100283494-100283744(-)$1	250	166	206	13.1048
GUCCACAGUCUCCUGGGUGGUGCGCUGAGCCCCAAGGCUG	chrX:153677138-153677390(+)$1	252	19	59	12.1702
UGAUGAUGUCCCCUUGUACUGGGAUGCAUGGGACGUCAUG	chr15:75650848-75651135(-)$1	287	31	71	16.9595
UGUCUUCUGUGGGUGCCUGCUCCUUGCACCCCACAGUGUU	chr1:988678-988947(+)$1	269	56	96	11.0692
GCUGCGUCAACACCGCCGGCAGUUACUGGUGCCAGUGUUG	chr9:139564580-139564835(+)$1	255	82	122	14.2138
GUCGUGGGAAUCCGGGGCCGGGCCAGGUCUAGGUUCCCAG	chrX:64754372-64754676(-)$1	304	83	123	13.2092
GGCUUUCACCCACCACCCGCUGCCUGUGCUUGCUGGAGUC	chr19:13189414-13189688(+)$1	274	88	128	12.0237
GGUGGCUGGGACGUGGUCAGGGCUGUGGCCGAGUUUUGGU	chr11:292861-293205(+)$1	344	48	88	12.5847
AUGGUCCCCGAUUGUGAGGGCAGUACCUGGCAGCAGGGCC	chrX:151123176-151123419(-)$1	243	100	140	16.5355
GCCUUCCCCCGGGUCCGGCGCCGAAGCUUUCUCCCCCGGG	chr5:176980941-176981210(-)$1	269	72	112	13.9883
UGUGAUCUGGAGGGAGGCCACUGUAGGCAUAUUUCCCAUU	chr1:46034446-46034709(+)$1	263	5	45	16.4599

#DB
(((((.(((((((.((((......))))..)).).)))).	chr19:1012285-1012544(-)$1	1	125	165	14.0236
(((((((.((((((((((((....)))))))))))).)))	chr2:220397433-220397717(+)$1	1	66	106	14.3409
(((((((((((...(((((......)))))..))))))))	chr7:100285132-100285388(-)$1	1	158	198	16.8396
((((((....((((.((((....)))...).))))..)))	chr20:3735047-3735375(-)$1	1	161	201	11.9833
(((((.(..(((.((((((......))).))).)))))))	chr17:80018507-80018758(-)$1	1	188	228	18.1647
((((((((((((.(((.(((.....))).))).)))))))	chr22:20073834-20074105(+)$1	1	129	169	15.1566
((((((((((.((((((.(......).))))))...))))	chr7:100173274-100173506(-)$1	1	115	155	13.7514
(((((.(((.(((((((((......))))))))))))..)	chr19:617758-618088(-)$1	1	103	143	15.1895
(((((.((((((.((((((......))))))....)))))	chr3:48664368-48664615(-)$1	1	70	110	13.9997
.((((.((((.((...(((......))).)).))))))))	chr17:80016436-80016716(-)$1	1	182	222	13.2467
(((((((((.((.((.((.........)).)).)))))))	chr8:145111219-145111439(-)$1	1	47	87	11.6433
(((((.(((((((.((((......))))..)).).)))).	chr19:1012140-1012428(-)$1	1	9	49	13.2776
).((((((..(.((((.((......)).)))).).)))))	chr16:72138181-72138487(+)$1	1	98	138	12.5304
(.(((.((.((((.(((((......))))).)))).)).)	chr3:9862058-9862337(+)$1	1	76	116	14.0211
((((((((.((((((...(......).)))))).))))))	chrX:153178614-153178873(-)$1	1	63	103	13.1678
))))).(((...(((((((......))).))))...))).	chr7:100174280-100174518(-)$1	1	130	170	14.1322
(((((((.((((....(((......)))....))))...)	chr10:3167186-3167492(+)$1	1	50	90	15.3442
.(((((...((((.(((..(((...))).))).))))...	chr14:24032936-24033268(-)$1	1	66	106	11.4480
((((((...((..(.((((......)))).)..)))))))	chr17:79180507-79180823(-)$1	1	1	41	15.9162
((.(((((((.(.((.(((......))).)).)..)))))	chr19:18547547-18547869(-)$1	1	135	175	17.1308
(((((.(((.(..(((((((.....)))))))..)...))	chrX:152936766-152937010(-)$1	1	48	88	13.2108
(((.((((.((.(...(((......)))).)))))).)))	chr19:18548452-18548753(-)$1	1	139	179	14.8533
(.(((.(((((..(((.(((....)))))).))))).)))	chr10:49659518-49659795(-)$1	1	231	271	12.1315
)((...(((((..(((((((......)).))))).)))))	chr8:21926769-21927067(+)$1	1	167	207	12.5545
(((((((.((((.((((.........))))))))..))))	chr12:125270542-125270852(-)$1	1	62	102	11.8632
)))))))((((((((((((......)))).))))))))((	chr11:431634-431926(-)$1	1	104	144	13.7322
.((((((((..(((.((((......)))))))....))))	chr6:33179056-33179343(+)$1	1	14	54	14.6184
.(((.((.((((((..(((......))))))))))).)))	chr1:44820431-44820689(-)$1	1	206	246	13.6016
(((..((((.((..((((......))))..))))))....	chr10:70525593-70525890(+)$1	1	85	125	13.5515
(((((((.....(((.(((......)))...))).)))))	chr1:52825790-52826170(-)$1	1	17	57	17.0385
(((.(((.((...(.((((......)))).)..)).))))	chr2:242447752-242448020(-)$1	1	115	155	15.8026
(((((((((((..(.(((((......)))))).)))))..	chr15:75651367-75651678(-)$1	1	115	155	14.6656
.((..((((((((((.(((......)))...))))..)))	chr21:45745708-45745955(+)$1	1	142	182	15.0513
((((((....((.(((.........))).))))))))).(	chr6:31938137-31938452(-)$1	1	204	244	12.0297
(((((.((((((((((.((......)).).))..))))).	chr16:841813-842062(+)$1	1	151	191	13.5635
(.(.(((..((((((((((......))))))))))..)))	chr21:46912889-46913211(+)$1	1	39	79	17.4532
(.(((....((((((((((....))))))))))...))))	chr3:52561265-52561552(-)$1	1	50	90	13.9485
(((((.((((.(.(((..........))).).)))...).	chr16:89805344-89805606(+)$1	1	168	208	11.1497
((..(((...(.(((...((....))...))).)...)))	chr9:139563976-139564202(+)$1	1	9	49	12.5062
)))))))))))))))((((......))))((((((.(((.	chr11:64124702-64124965(+)$1	1	134	174	13.1893
(((((((((.(((((.(((....)))))))).))))))))	chr8:145693144-145693379(+)$1	1	52	92	12.5411
.(((((((((((((...((...))...)))))))))))))	chr16:2867269-2867549(+)$1	1	114	154	13.1244
..(((.((((....(((((......)))))..))))))).	chr8:145011298-145011633(-)$1	1	24	64	15.0422
(((((....(((((.((((((......).))))).)))))	chr9:139905445-139905712(-)$1	1	159	199	13.2187
(((.(((..(((((((((((.....))).)))))..))).	chr7:100283494-100283744(-)$1	1	166	206	13.1048
(....((((((..((((.(.(......).)))))))))))	chrX:153677138-153677390(+)$1	1	19	59	12.1702
(.((((((((((..((((......)))).)))))))))).	chr15:75650848-75651135(-)$1	1	31	71	16.9595
.(((((((((((((((.........))).)))))))....	chr1:988678-988947(+)$1	1	56	96	11.0692
)))))))((((((((((((......))))))...))))))	chr9:139564580-139564835(+)$1	1	82	122	14.2138
.((.((((((((..(((((......))))).)))))))).	chrX:64754372-64754676(-)$1	1	83	123	13.2092
((.(((.(((((.((..(((.....)))..)).))).)).	chr19:13189414-13189688(+)$1	1	88	128	12.0237
(...((((((((.((((((......)))))).))))))))	chr11:292861-293205(+)$1	1	48	88	12.5847
(.(((.(((..((((.(((......))).))))..)))..	chrX:151123176-151123419(-)$1	1	100	140	16.5355
(((((((((((((...(((......)))......))))))	chr5:176980941-176981210(-)$1	1	72	112	13.9883
(((((..(((.((((.(((......)))...)))))))..	chr1:46034446-46034709(+)$1	1	5	45	16.4599

#PSSM
g : 0.18	c : 0.14	= : 0.12	h : 0.07	f : 0.07	i : 0.07	e : 0.05	: : 0.05	[ : 0.05	b : 0.05	! : 0.05	a : 0.03	G : 0.01	
g : 0.18	= : 0.16	[ : 0.10	h : 0.09	f : 0.09	c : 0.09	i : 0.07	e : 0.05	b : 0.05	d : 0.01	: : 0.01	! : 0.01	# : 0.01	" : 0.01	
c : 0.18	= : 0.16	g : 0.14	f : 0.10	h : 0.09	i : 0.07	e : 0.05	b : 0.05	[ : 0.03	d : 0.01	a : 0.01	! : 0.01	# : 0.01	" : 0.01	
c : 0.18	g : 0.16	= : 0.12	f : 0.10	h : 0.09	[ : 0.09	i : 0.07	! : 0.05	e : 0.03	" : 0.03	d : 0.01	# : 0.01	
c : 0.21	g : 0.16	= : 0.12	h : 0.12	f : 0.10	i : 0.07	e : 0.03	d : 0.03	! : 0.03	b : 0.01	" : 0.01	[ : 0.01	# : 0.01	
[ : 0.23	g : 0.12	= : 0.12	f : 0.09	h : 0.09	c : 0.09	e : 0.03	b : 0.03	d : 0.03	i : 0.03	# : 0.03	: : 0.01	" : 0.01	! : 0.01	
c : 0.14	= : 0.12	d : 0.10	g : 0.10	f : 0.09	# : 0.07	e : 0.07	h : 0.07	a : 0.05	b : 0.05	" : 0.03	i : 0.01	[ : 0.01	! : 0.01	
d : 0.10	c : 0.10	[ : 0.09	= : 0.09	e : 0.09	f : 0.09	h : 0.09	# : 0.07	! : 0.05	b : 0.05	" : 0.05	g : 0.05	$ : 0.01	i : 0.01	
d : 0.12	= : 0.10	e : 0.10	c : 0.10	# : 0.07	! : 0.07	g : 0.07	h : 0.07	f : 0.07	[ : 0.05	" : 0.05	b : 0.03	$ : 0.01	i : 0.01	
d : 0.14	= : 0.12	e : 0.12	c : 0.09	[ : 0.09	f : 0.09	g : 0.07	! : 0.05	b : 0.05	h : 0.05	# : 0.03	" : 0.03	$ : 0.01	
= : 0.12	e : 0.12	a : 0.09	d : 0.09	[ : 0.09	b : 0.09	f : 0.09	c : 0.05	h : 0.05	g : 0.05	" : 0.03	! : 0.03	i : 0.01	$ : 0.01	# : 0.01	
d : 0.14	b : 0.10	= : 0.10	! : 0.10	c : 0.07	f : 0.07	e : 0.07	" : 0.05	[ : 0.05	h : 0.05	g : 0.05	a : 0.03	i : 0.01	$ : 0.01	# : 0.01	
[ : 0.18	! : 0.16	d : 0.14	= : 0.07	f : 0.07	e : 0.07	b : 0.05	c : 0.05	g : 0.05	" : 0.03	# : 0.03	i : 0.01	a : 0.01	h : 0.01	
c : 0.16	d : 0.14	f : 0.10	[ : 0.07	= : 0.07	" : 0.07	b : 0.07	e : 0.07	a : 0.05	! : 0.05	# : 0.03	g : 0.03	i : 0.01	h : 0.01	
d : 0.20	c : 0.16	e : 0.12	[ : 0.10	f : 0.09	" : 0.07	b : 0.07	= : 0.05	g : 0.03	i : 0.01	# : 0.01	h : 0.01	! : 0.01	
d : 0.23	e : 0.14	c : 0.12	[ : 0.12	" : 0.10	f : 0.07	= : 0.05	a : 0.03	! : 0.03	i : 0.01	# : 0.01	g : 0.01	
c : 0.27	d : 0.20	e : 0.14	[ : 0.07	f : 0.07	= : 0.05	" : 0.05	r : 0.03	i : 0.01	b : 0.01	g : 0.01	s : 0.01	! : 0.01	
c : 0.32	d : 0.16	e : 0.12	b : 0.07	= : 0.05	f : 0.05	r : 0.05	[ : 0.03	" : 0.03	i : 0.01	! : 0.01	g : 0.01	s : 0.01	
c : 0.32	e : 0.10	b : 0.09	d : 0.09	o : 0.07	r : 0.07	= : 0.05	a : 0.05	f : 0.05	i : 0.01	! : 0.01	g : 0.01	s : 0.01	
o : 0.61	c : 0.09	r : 0.07	m : 0.05	b : 0.03	e : 0.03	= : 0.01	g : 0.01	s : 0.01	l : 0.01	[ : 0.01	
o : 0.65	m : 0.10	n : 0.07	r : 0.07	a : 0.03	c : 0.01	s : 0.01	l : 0.01	
o : 0.69	m : 0.10	n : 0.07	r : 0.07	c : 0.01	s : 0.01	l : 0.01	
o : 0.69	m : 0.10	n : 0.07	r : 0.07	l : 0.01	s : 0.01	b : 0.01	
o : 0.69	n : 0.07	r : 0.07	m : 0.05	c : 0.03	l : 0.01	= : 0.01	s : 0.01	b : 0.01	
o : 0.61	d : 0.07	n : 0.07	r : 0.07	c : 0.05	= : 0.03	l : 0.01	s : 0.01	b : 0.01	3 : 0.01	
c : 0.38	d : 0.16	e : 0.07	o : 0.07	= : 0.05	f : 0.05	b : 0.05	a : 0.03	r : 0.03	i : 0.01	g : 0.01	s : 0.01	3 : 0.01	
c : 0.36	d : 0.18	e : 0.10	= : 0.05	3 : 0.05	f : 0.05	b : 0.05	] : 0.03	o : 0.03	i : 0.01	r : 0.01	g : 0.01	
c : 0.36	d : 0.18	e : 0.10	f : 0.09	= : 0.07	3 : 0.03	b : 0.03	] : 0.03	a : 0.03	i : 0.01	g : 0.01	
] : 0.25	d : 0.12	e : 0.10	f : 0.10	3 : 0.09	2 : 0.07	= : 0.07	a : 0.03	c : 0.03	i : 0.01	b : 0.01	4 : 0.01	g : 0.01	6 : 0.01	
e : 0.16	f : 0.12	] : 0.12	c : 0.10	= : 0.09	2 : 0.07	d : 0.07	b : 0.05	3 : 0.05	a : 0.03	g : 0.03	i : 0.01	4 : 0.01	6 : 0.01	
b : 0.18	f : 0.12	= : 0.09	c : 0.09	d : 0.09	e : 0.09	] : 0.07	a : 0.05	3 : 0.05	2 : 0.03	g : 0.03	i : 0.01	4 : 0.01	h : 0.01	6 : 0.01	
d : 0.16	b : 0.12	c : 0.10	= : 0.09	] : 0.09	2 : 0.07	f : 0.07	e : 0.07	g : 0.05	4 : 0.03	h : 0.03	i : 0.01	a : 0.01	3 : 0.01	6 : 0.01	
d : 0.23	] : 0.18	= : 0.10	f : 0.07	2 : 0.07	e : 0.07	h : 0.05	i : 0.03	4 : 0.03	c : 0.03	g : 0.03	a : 0.01	3 : 0.01	6 : 0.01	
d : 0.21	= : 0.10	e : 0.09	a : 0.07	c : 0.07	3 : 0.07	2 : 0.07	b : 0.05	h : 0.05	i : 0.03	4 : 0.03	f : 0.03	g : 0.03	] : 0.01	6 : 0.01	
d : 0.18	] : 0.10	= : 0.10	c : 0.07	3 : 0.07	b : 0.07	h : 0.07	2 : 0.07	e : 0.05	g : 0.05	f : 0.05	4 : 0.03	a : 0.01	i : 0.01	
d : 0.14	= : 0.10	3 : 0.10	e : 0.10	g : 0.10	2 : 0.09	c : 0.09	h : 0.07	f : 0.05	] : 0.03	4 : 0.01	b : 0.01	[ : 0.01	i : 0.01	
c : 0.16	e : 0.10	g : 0.10	] : 0.09	= : 0.09	h : 0.09	d : 0.07	3 : 0.07	2 : 0.05	f : 0.05	4 : 0.03	a : 0.01	b : 0.01	i : 0.01	
c : 0.21	g : 0.16	e : 0.12	= : 0.09	h : 0.09	f : 0.07	d : 0.05	3 : 0.05	4 : 0.05	b : 0.03	2 : 0.01	i : 0.01	
c : 0.21	g : 0.14	e : 0.10	= : 0.09	f : 0.07	h : 0.07	d : 0.05	2 : 0.05	4 : 0.05	3 : 0.03	] : 0.01	: : 0.01	a : 0.01	i : 0.01	b : 0.01	
c : 0.16	g : 0.14	] : 0.12	e : 0.10	= : 0.09	f : 0.09	2 : 0.07	h : 0.05	4 : 0.05	d : 0.01	: : 0.01	3 : 0.01	q : 0.01	i : 0.01	

#score	768.0709999345002
#seq	55
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_UTR_m1_run1.txt

#BEAR
dddeeeeeeeeeennnnneeeee]eeeee22	chr4:152024072-152024284(+)$1	212	9	40	10.9939
dddeeeeeeeeeennnnneeeee]eeeee22	chr4:152024028-152024246(+)$1	218	53	84	10.9939
d!!dddd[a[ccclllccc]a]dddd]dddd	chr4:122744697-122744924(-)$1	227	132	163	8.9489
[ccc[a!!eeeeennnnneeeee22accca2	chr6:32942411-32942625(+)$1	214	110	141	11.5806
h$$$$$gggggggnnnnnggggggg]hhhhh	chr15:28508036-28508317(-)$1	281	116	147	10.3811
bbdddd[ffffffnnnnnffffff22dddd2	chr17:7127538-7127784(+)$1	246	101	132	10.6276
%%dddd[bb[cccnnnnnccc]bbdddd444	chr9:19378796-19379003(-)$1	207	42	73	12.4296
iiiii!!ffffffooooooffffffiiiiii	chr5:64018211-64018431(-)$1	220	22	53	10.7440
ee"""eeeee[bboooooobb]eeeeeeeee	chr8:48874560-48874774(+)$1	214	151	182	9.1964
d[ccc!!eeeeeannnnna]eeeeecccddd	chr9:130551963-130552204(+)$1	241	199	230	11.5298
%%dddd[bb[cccnnnnnccc]bbdddd444	chr9:19378766-19378983(-)$1	217	22	53	12.4296
dddd[dddd!!bbnnnnnbb22dddd333dd	chr11:77780878-77781164(-)$1	286	62	93	10.4723
bb[ccc[ccc[bbnnnnnbbccc]cccbb22	chr11:86048369-86048676(+)$1	307	177	208	10.6756
=============nnnnn=============	chr2:130940170-130940445(+)$1	275	192	223	14.1543
gggggccc[ddddnnnnndddd22cccgggg	chr16:70514518-70514724(-)$1	206	87	118	10.7134
"eeeeebb"""bbnnnnnbb4444bb]eeee	chrX:154467271-154467511(+)$1	240	129	160	10.1596
b============nnnnn============5	chr4:144106164-144106394(+)$1	230	115	146	13.3877
""ffffff[ddddnnnnndddd]ffffff44	chr9:95032104-95032318(-)$1	214	70	101	10.6581
ffff[ccc[acccooooooccc]a]cccfff	chr19:10225611-10225851(-)$1	240	205	236	9.9049
%%dddd[bb[cccnnnnnccc]bbdddd444	chr9:19378793-19378996(-)$1	203	35	66	12.4296
d####ccc!!cccnnnnnccc]ccc333ddd	chr9:130551935-130552163(+)$1	228	145	176	12.9932
:::============lll============:	chrX:62567561-62567772(-)$1	211	55	86	8.1573
gggggg[gggggggmmmmggggggg]ggggg	chr11:72414349-72414560(-)$1	211	152	183	8.7574
d$$$$$bbeeeeennnnneeeee]bb4444d	chr16:70514461-70514718(-)$1	257	137	168	10.5341
cc!!ggggggg!!ammmma333ggggggg]c	chr17:43185552-43185799(+)$1	247	112	143	9.7827
[eeeee"""ddddnnnnnddddeeeeebb33	chr9:140446425-140446714(+)$1	289	192	223	10.7323
gggggbb"""bboooooobb22bb]gggggg	chr4:84393290-84393535(-)$1	245	106	137	8.9742
ddddiiiiiiiiiooooooiiiiiiiii]dd	chr6:4115994-4116215(-)$1	221	124	155	11.7550
"""bb[bb"""cccmmmmccc]bb]bb4444	chr17:4880247-4880504(-)$1	257	150	181	8.8444
cc####ffffffooooooffffff4444ccc	chr12:25260648-25260895(+)$1	247	94	125	9.9942
%%dddd[bb[cccnnnnnccc]bbdddd444	chr9:19378803-19379010(-)$1	207	49	80	12.4296
ccciiiiiiiiiooooooiiiiiiiii]ccc	chr6:4115939-4116194(-)$1	255	104	135	11.5365
##ffffff[ddddnnnnndddd]ffffff22	chr9:95032065-95032304(-)$1	239	56	87	10.4453
%%dddd[bb[cccnnnnnccc]bbdddd444	chr9:19378783-19378993(-)$1	210	32	63	12.4296
dddd[ccc[cccooooooccc333ccc]ddd	chr3:127872417-127872700(+)$1	283	175	206	11.3052
gggggg[eeeeeooooooeeeee22gggggg	chr11:75111730-75111939(+)$1	209	176	207	9.9879
dd"""bb!!ddddnnnnndddd22bb333dd	chr6:32942405-32942611(+)$1	206	38	69	10.3393
"""gggggggacccmmmmccc22a]gggggg	chr19:55773708-55773977(-)$1	269	66	97	9.2973
[dddd!!affffffmmmmffffff4444a22	chr1:38464955-38465202(-)$1	247	16	47	8.3788
iiiii!!ffffffooooooffffffiiiiii	chr5:64018253-64018463(-)$1	210	54	85	10.7440
e[a[iiiiiiiiiooooooiiiiiiiiia]e	chr18:55268734-55268982(-)$1	248	98	129	11.8478
ddddiiiiiiiiiooooooiiiiiiiii]dd	chr6:4116015-4116258(-)$1	243	167	198	11.7550
dddd!!gggggggooooooggggggg]dddd	chrX:30885210-30885436(-)$1	226	37	68	11.1314
ccdddd[ffffffnnnnnffffff]dddd::	chr15:69698750-69698998(+)$1	248	217	248	9.6301
dddeeeeeeeeeennnnneeeee]eeeee22	chr4:152024046-152024272(+)$1	226	35	66	10.9939
c!!dddd####aooooooa4444dddd22cc	chr1:53704023-53704272(-)$1	249	3	34	10.1795
%%dddd[bb[cccnnnnnccc]bbdddd444	chr9:19378810-19379016(-)$1	206	55	86	12.4296
gg::iiiiiiiiirrrrrrrrriiiiiiiii	chr2:99216169-99216428(-)$1	259	110	141	6.8353

#otherMatches

#Seq PSSM
CUGUGUUGGUUUUACUAAAAAACGCAACAAU	chr4:152024072-152024284(+)$1	212	9	40	10.9939
CUGUGUUGGUUUUACUAAAAAACGCAACAAU	chr4:152024028-152024246(+)$1	218	53	84	10.9939
GGAGCAGUGAUGUUGGGCAACUCUGCGCCGG	chr4:122744697-122744924(-)$1	227	132	163	8.9489
GCUGUCAAACUGGGUCUACCGGUGAGUAGAG	chr6:32942411-32942625(+)$1	214	110	141	11.5806
UCCGCUGUGGAAGUCAGUUUUCCAUUGCUUU	chr15:28508036-28508317(-)$1	281	116	147	10.3811
GCGGGCAGGGCUGGGCAGCGGCCUGAGUCUC	chr17:7127538-7127784(+)$1	246	101	132	10.6276
UGGAAUAGAAAUAGUAAAUGUGUCAUUCAUU	chr9:19378796-19379003(-)$1	207	42	73	12.4296
AAAAAUCGGUUUUUAAUAUAAAGCUUUUUUA	chr5:64018211-64018431(-)$1	220	22	53	10.7440
UGAGACAGAGGCCUGACCUGGGCUCUGCACA	chr8:48874560-48874774(+)$1	214	151	182	9.1964
CUGAGAACCCUGCGUGGGGACAGGGCUCGCC	chr9:130551963-130552204(+)$1	241	199	230	11.5298
UGGAAUAGAAAUAGUAAAUGUGUCAUUCAUU	chr9:19378766-19378983(-)$1	217	22	53	12.4296
UAUGAUCUUUCCUUUUAUAGAUAAGAAAACA	chr11:77780878-77781164(-)$1	286	62	93	10.4723
UAUCCUCAGUUGACUCAUUCACUCAGGUAAU	chr11:86048369-86048676(+)$1	307	177	208	10.6756
CGCUGUCCCUGCCCCAGUGGCGGGGGUGGCG	chr2:130940170-130940445(+)$1	275	192	223	14.1543
UUUCUGCAUGGAUGGUCAGUCUCUUGCCCUC	chr16:70514518-70514724(-)$1	206	87	118	10.7134
AUGCUAUGGAAGCUGAAUGCCGGACGCUAGC	chrX:154467271-154467511(+)$1	240	129	160	10.1596
CCGCUGGGGGGCCCGACAGGCCCCUCGGCGC	chr4:144106164-144106394(+)$1	230	115	146	13.3877
UUUACAAAGCAGUGCCCAGCUGGUUUGUGCG	chr9:95032104-95032318(-)$1	214	70	101	10.6581
CCAGUGCCUCCCCUCCUCUGGGCGUGGUCUG	chr19:10225611-10225851(-)$1	240	205	236	9.9049
UGGAAUAGAAAUAGUAAAUGUGUCAUUCAUU	chr9:19378793-19378996(-)$1	203	35	66	12.4296
CCACCAGUGACUUUUUCUAAGAGCUCCCGGC	chr9:130551935-130552163(+)$1	228	145	176	12.9932
cucuuuaauuuguugauguaaugaauuagaa	chrX:62567561-62567772(-)$1	211	55	86	8.1573
UGGCUGACUGGGCAGCUGUGUCCAGGCAGCC	chr11:72414349-72414560(-)$1	211	152	183	8.7574
CUGCCAGUCCUAGACAACUUGGGUACAUCUG	chr16:70514461-70514718(-)$1	257	137	168	10.5341
UAGGAGGCCUCCACUCCGGAUCGAGGCCUGU	chr17:43185552-43185799(+)$1	247	112	143	9.7827
AGCUUCAGGGGCCGCAAGGGCCGGGGCGCCA	chr9:140446425-140446714(+)$1	289	192	223	10.7323
UUCAGGCGAAGUAAAUGAGCAAGCACUGAAG	chr4:84393290-84393535(-)$1	245	106	137	8.9742
GUAAAGCAUGUCCAAGGAAGGAUGUGCUGUU	chr6:4115994-4116215(-)$1	221	124	155	11.7550
CGGUGAGUACCCAGCCCUCUGAACCCAAGUA	chr17:4880247-4880504(-)$1	257	150	181	8.8444
CCUUAUAGUUAUGACACAAUAGCUUCCUGGG	chr12:25260648-25260895(+)$1	247	94	125	9.9942
UGGAAUAGAAAUAGUAAAUGUGUCAUUCAUU	chr9:19378803-19379010(-)$1	207	49	80	12.4296
UAAAGCAUGUCCAAGGAAGGAUGUGCUGUUA	chr6:4115939-4116194(-)$1	255	104	135	11.5365
UUUACAAAGCAGUGCCCAGCUGGUUUGUGCG	chr9:95032065-95032304(-)$1	239	56	87	10.4453
UGGAAUAGAAAUAGUAAAUGUGUCAUUCAUU	chr9:19378783-19378993(-)$1	210	32	63	12.4296
CGGCGAGCCACUGCUUCAGGUCACGCUGGUC	chr3:127872417-127872700(+)$1	283	175	206	11.3052
UAAAUGCUAAGUUGGuuuauuuauuuauuua	chr11:75111730-75111939(+)$1	209	176	207	9.9879
CUGCAAUACCUACACAAGGUAGUGAUGAAGG	chr6:32942405-32942611(+)$1	206	38	69	10.3393
ACAAGGCCCUCUCCCAAGGGAUCGCAGGGCC	chr19:55773708-55773977(-)$1	269	66	97	9.2973
UUUUGAAUGCAGAGGCCUCUUUGCCAGGAGC	chr1:38464955-38465202(-)$1	247	16	47	8.3788
AAAAAUCGGUUUUUAAUAUAAAGCUUUUUUA	chr5:64018253-64018463(-)$1	210	54	85	10.7440
ACCAUUUUCUCCAGAAGCGUGGAGGAAAGAU	chr18:55268734-55268982(-)$1	248	98	129	11.8478
GUAAAGCAUGUCCAAGGAAGGAUGUGCUGUU	chr6:4116015-4116258(-)$1	243	167	198	11.7550
uuaacugaagucuauauucagauuuccuuaa	chrX:30885210-30885436(-)$1	226	37	68	11.1314
gaggcugaagugggaggacugcuugggccca	chr15:69698750-69698998(+)$1	248	217	248	9.6301
CUGUGUUGGUUUUACUAAAAAACGCAACAAU	chr4:152024046-152024272(+)$1	226	35	66	10.9939
GAAGAGGUUAGCGAGAAGGAACCCCUCCACG	chr1:53704023-53704272(-)$1	249	3	34	10.1795
UGGAAUAGAAAUAGUAAAUGUGUCAUUCAUU	chr9:19378810-19379016(-)$1	206	55	86	12.4296
UGGGCUGAAUCCCAAAAGGAAAGGGGUUUAG	chr2:99216169-99216428(-)$1	259	110	141	6.8353

#DB
(((((((((((((.....))))).)))))..	chr4:152024072-152024284(+)$1	1	9	40	10.9939
(((((((((((((.....))))).)))))..	chr4:152024028-152024246(+)$1	1	53	84	10.9939
(..((((.(.(((...))).).)))).))))	chr4:122744697-122744924(-)$1	1	132	163	8.9489
.(((.(..(((((.....)))))..))))).	chr6:32942411-32942625(+)$1	1	110	141	11.5806
(.....(((((((.....))))))).)))))	chr15:28508036-28508317(-)$1	1	116	147	10.3811
((((((.((((((.....))))))..)))).	chr17:7127538-7127784(+)$1	1	101	132	10.6276
..((((.((.(((.....))).))))))...	chr9:19378796-19379003(-)$1	1	42	73	12.4296
(((((..((((((......))))))))))))	chr5:64018211-64018431(-)$1	1	22	53	10.7440
((...(((((.((......)).)))))))))	chr8:48874560-48874774(+)$1	1	151	182	9.1964
(.(((..((((((.....).)))))))))))	chr9:130551963-130552204(+)$1	1	199	230	11.5298
..((((.((.(((.....))).))))))...	chr9:19378766-19378983(-)$1	1	22	53	12.4296
((((.((((..((.....))..))))...))	chr11:77780878-77781164(-)$1	1	62	93	10.4723
((.(((.(((.((.....))))).)))))..	chr11:86048369-86048676(+)$1	1	177	208	10.6756
(((((((((((((.....)))))))))))))	chr2:130940170-130940445(+)$1	1	192	223	14.1543
)))))(((.((((.....))))..)))((((	chr16:70514518-70514724(-)$1	1	87	118	10.7134
.(((((((...((.....))....)).))))	chrX:154467271-154467511(+)$1	1	129	160	10.1596
(((((((((((((.....)))))))))))).	chr4:144106164-144106394(+)$1	1	115	146	13.3877
..((((((.((((.....)))).))))))..	chr9:95032104-95032318(-)$1	1	70	101	10.6581
((((.(((.((((......))).).))))))	chr19:10225611-10225851(-)$1	1	205	236	9.9049
..((((.((.(((.....))).))))))...	chr9:19378793-19378996(-)$1	1	35	66	12.4296
(....(((..(((.....))).)))...)))	chr9:130551935-130552163(+)$1	1	145	176	12.9932
...((((((((((((...)))))))))))).	chrX:62567561-62567772(-)$1	1	55	86	8.1573
((((((.(((((((....))))))).)))))	chr11:72414349-72414560(-)$1	1	152	183	8.7574
(.....(((((((.....))))).))....)	chr16:70514461-70514718(-)$1	1	137	168	10.5341
((..(((((((..(....)...))))))).)	chr17:43185552-43185799(+)$1	1	112	143	9.7827
.(((((...((((.....)))))))))))..	chr9:140446425-140446714(+)$1	1	192	223	10.7323
(((((((...((......))..)).))))))	chr4:84393290-84393535(-)$1	1	106	137	8.9742
(((((((((((((......))))))))).))	chr6:4115994-4116215(-)$1	1	124	155	11.7550
...((.((...(((....))).)).))....	chr17:4880247-4880504(-)$1	1	150	181	8.8444
((....((((((......))))))....)))	chr12:25260648-25260895(+)$1	1	94	125	9.9942
..((((.((.(((.....))).))))))...	chr9:19378803-19379010(-)$1	1	49	80	12.4296
((((((((((((......))))))))).)))	chr6:4115939-4116194(-)$1	1	104	135	11.5365
..((((((.((((.....)))).))))))..	chr9:95032065-95032304(-)$1	1	56	87	10.4453
..((((.((.(((.....))).))))))...	chr9:19378783-19378993(-)$1	1	32	63	12.4296
((((.(((.(((......)))...))).)))	chr3:127872417-127872700(+)$1	1	175	206	11.3052
((((((.(((((......)))))..))))))	chr11:75111730-75111939(+)$1	1	176	207	9.9879
((...((..((((.....))))..))...))	chr6:32942405-32942611(+)$1	1	38	69	10.3393
...(((((((((((....)))..).))))))	chr19:55773708-55773977(-)$1	1	66	97	9.2973
.((((..(((((((....))))))....)..	chr1:38464955-38465202(-)$1	1	16	47	8.3788
(((((..((((((......))))))))))))	chr5:64018253-64018463(-)$1	1	54	85	10.7440
(.(.(((((((((......)))))))))).)	chr18:55268734-55268982(-)$1	1	98	129	11.8478
(((((((((((((......))))))))).))	chr6:4116015-4116258(-)$1	1	167	198	11.7550
((((..(((((((......))))))).))))	chrX:30885210-30885436(-)$1	1	37	68	11.1314
))((((.((((((.....)))))).))))..	chr15:69698750-69698998(+)$1	1	217	248	9.6301
(((((((((((((.....))))).)))))..	chr4:152024046-152024272(+)$1	1	35	66	10.9939
(..((((....(......)....))))..))	chr1:53704023-53704272(-)$1	1	3	34	10.1795
..((((.((.(((.....))).))))))...	chr9:19378810-19379016(-)$1	1	55	86	12.4296
))..(((((((((.........)))))))))	chr2:99216169-99216428(-)$1	1	110	141	6.8353

#PSSM
d : 0.27	% : 0.12	g : 0.10	c : 0.10	" : 0.08	[ : 0.06	b : 0.06	i : 0.04	e : 0.04	h : 0.02	= : 0.02	f : 0.02	: : 0.02	# : 0.02	
d : 0.20	% : 0.12	c : 0.10	g : 0.10	e : 0.06	" : 0.06	! : 0.04	$ : 0.04	b : 0.04	i : 0.04	[ : 0.04	= : 0.04	# : 0.04	f : 0.02	: : 0.02	
d : 0.35	" : 0.08	g : 0.08	! : 0.06	c : 0.06	f : 0.06	$ : 0.04	i : 0.04	= : 0.04	e : 0.04	# : 0.04	: : 0.04	[ : 0.02	a : 0.02	
d : 0.33	e : 0.10	g : 0.10	c : 0.06	i : 0.06	= : 0.06	f : 0.06	$ : 0.04	" : 0.04	# : 0.04	! : 0.02	b : 0.02	[ : 0.02	: : 0.02	
d : 0.22	i : 0.14	g : 0.12	e : 0.10	[ : 0.08	= : 0.06	$ : 0.04	" : 0.04	c : 0.04	f : 0.04	# : 0.04	b : 0.02	! : 0.02	
d : 0.22	e : 0.12	! : 0.10	c : 0.10	i : 0.10	g : 0.08	= : 0.06	$ : 0.04	f : 0.04	b : 0.04	a : 0.02	[ : 0.02	# : 0.02	
[ : 0.22	! : 0.10	b : 0.10	i : 0.10	e : 0.08	g : 0.08	c : 0.08	d : 0.06	= : 0.06	f : 0.06	" : 0.02	
b : 0.18	f : 0.14	e : 0.12	g : 0.10	c : 0.10	i : 0.10	= : 0.06	! : 0.04	" : 0.04	[ : 0.02	d : 0.02	a : 0.02	# : 0.02	
e : 0.16	f : 0.12	b : 0.12	g : 0.10	[ : 0.10	i : 0.10	" : 0.08	= : 0.06	! : 0.04	a : 0.02	d : 0.02	c : 0.02	# : 0.02	
e : 0.16	[ : 0.14	f : 0.12	g : 0.10	d : 0.10	i : 0.10	= : 0.06	" : 0.06	! : 0.04	c : 0.04	a : 0.02	# : 0.02	
c : 0.20	e : 0.14	f : 0.12	d : 0.10	i : 0.10	g : 0.08	= : 0.06	[ : 0.04	" : 0.04	! : 0.02	b : 0.02	a : 0.02	# : 0.02	
c : 0.25	e : 0.14	f : 0.12	b : 0.10	d : 0.10	i : 0.10	g : 0.06	= : 0.06	! : 0.02	a : 0.02	
c : 0.22	o : 0.12	e : 0.10	f : 0.10	d : 0.10	b : 0.08	i : 0.08	g : 0.06	= : 0.06	a : 0.02	! : 0.02	
n : 0.54	o : 0.29	c : 0.04	l : 0.02	= : 0.02	g : 0.02	a : 0.02	f : 0.02	r : 0.02	
n : 0.54	o : 0.29	m : 0.10	l : 0.02	= : 0.02	r : 0.02	
n : 0.54	o : 0.29	m : 0.10	l : 0.04	r : 0.02	
n : 0.54	o : 0.29	m : 0.10	c : 0.02	l : 0.02	r : 0.02	
n : 0.54	o : 0.29	m : 0.10	c : 0.02	l : 0.02	r : 0.02	
c : 0.22	o : 0.16	e : 0.12	d : 0.10	f : 0.08	b : 0.08	a : 0.06	= : 0.06	g : 0.04	i : 0.02	r : 0.02	
c : 0.22	e : 0.12	f : 0.12	b : 0.10	d : 0.10	i : 0.08	g : 0.06	= : 0.06	] : 0.04	3 : 0.02	4 : 0.02	r : 0.02	
c : 0.25	e : 0.14	f : 0.12	d : 0.10	i : 0.08	g : 0.06	= : 0.06	2 : 0.04	4 : 0.04	a : 0.02	b : 0.02	3 : 0.02	r : 0.02	
] : 0.20	e : 0.14	f : 0.12	d : 0.10	i : 0.08	g : 0.06	2 : 0.06	= : 0.06	c : 0.04	4 : 0.04	3 : 0.04	r : 0.02	
e : 0.18	b : 0.16	f : 0.12	i : 0.10	g : 0.08	= : 0.06	2 : 0.06	] : 0.06	d : 0.04	c : 0.04	4 : 0.04	3 : 0.02	
f : 0.16	b : 0.16	] : 0.10	i : 0.10	2 : 0.08	g : 0.08	d : 0.06	e : 0.06	= : 0.06	a : 0.04	4 : 0.02	c : 0.02	3 : 0.02	
d : 0.18	e : 0.12	] : 0.10	i : 0.10	g : 0.08	f : 0.08	c : 0.08	2 : 0.06	= : 0.06	b : 0.06	4 : 0.04	
d : 0.20	i : 0.14	e : 0.10	c : 0.10	g : 0.10	b : 0.08	= : 0.06	] : 0.04	f : 0.04	4 : 0.04	a : 0.02	2 : 0.02	3 : 0.02	
d : 0.18	i : 0.14	c : 0.12	e : 0.10	g : 0.10	] : 0.06	3 : 0.06	= : 0.06	4 : 0.06	f : 0.04	h : 0.02	b : 0.02	
d : 0.20	i : 0.12	g : 0.12	e : 0.10	4 : 0.08	c : 0.06	3 : 0.06	= : 0.06	b : 0.04	f : 0.04	] : 0.04	h : 0.02	2 : 0.02	
4 : 0.16	d : 0.14	g : 0.12	e : 0.10	c : 0.06	i : 0.06	= : 0.06	f : 0.06	3 : 0.04	b : 0.04	] : 0.04	a : 0.04	h : 0.02	2 : 0.02	
d : 0.20	4 : 0.18	2 : 0.12	g : 0.10	i : 0.06	= : 0.06	c : 0.06	e : 0.04	] : 0.04	a : 0.02	h : 0.02	f : 0.02	3 : 0.02	: : 0.02	
d : 0.20	2 : 0.16	4 : 0.16	g : 0.10	c : 0.08	i : 0.06	e : 0.06	: : 0.04	h : 0.02	= : 0.02	5 : 0.02	f : 0.02	3 : 0.02	

#score	514.6341464842935
#seq	48
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_UTR_m2_run1.txt

#BEAR
eebb[ccctttttttttttccc22bb]	chr10:113942546-113942790(-)$1	244	159	186	21.9923
FFddddbbtttttttttttbb]dddd:	chr11:71718364-71718621(-)$1	257	143	170	19.7082
ddd[abbuuuuuuuuuuuubb]a]ddd	chr17:79986818-79987071(+)$1	253	171	198	22.6784
cccdddduuuuuuuuuuuudddd]ccc	chr4:83345895-83346193(-)$1	298	89	116	23.2720
c[bb[ccctttttttttttccc]bb33	chr14:24034801-24035051(-)$1	250	104	131	22.7069
gggggxxxxxxxxxxxxxxxggggggg	chr17:17722945-17723182(-)$1	237	117	144	18.2742
eeeee[auuuuuuuuuuuua]eeeeed	chr3:184080974-184081250(+)$1	276	94	121	24.3057
[ffffffvvvvvvvvvvvvvffffff]	chr17:73237663-73237933(-)$1	270	210	237	24.1724
cccddddtttttttttttdddd]ccc2	chr12:46751923-46752165(-)$1	242	179	206	21.6360
!ffffffuuuuuuuuuuuuffffff22	chr3:48664377-48664627(-)$1	250	88	115	23.5874
iiiiiiiuuuuuuuuuuuuiiiiiiii	chr1:31404293-31404574(-)$1	281	34	61	24.1287
ff[dddduuuuuuuuuuuuddddffff	chr2:101619017-101619268(+)$1	251	168	195	23.3319
=======vvvvvvvvvvvvv=======	chr2:97533512-97533799(-)$1	287	33	60	24.8224
ffffyyyyyyyyyyyyyyyyffffffc	chr1:146696530-146696836(-)$1	306	156	183	20.8057
dddd!!auuuuuuuuuuuua22dddda	chr22:26861408-26861696(-)$1	288	231	258	23.0072
[bb[cccvvvvvvvvvvvvvccc]bbd	chr8:145742453-145742751(-)$1	298	63	90	23.8914
$$$eeeeettttttttttteeeee333	chr3:49051492-49051776(+)$1	284	50	77	22.1212
ggggggguuuuuuuuuuuugggggggf	chr20:62599214-62599456(-)$1	242	89	116	24.1933
++++ccctttttttttttccc22eeee	chr17:56081356-56081611(-)$1	255	212	239	19.4903
eee[cccuuuuuuuuuuuuccc]eeee	chr11:611475-611775(+)$1	300	217	244	24.4329
[eeeeebbtttttttttttbb]eeeee	chr9:96070420-96070744(+)$1	324	155	182	22.3074
f[eeeeevvvvvvvvvvvvveeeee22	chr11:62609043-62609248(-)$1	205	118	145	24.3602
dd[bbccctttttttttttccc]bbdd	chr19:35500184-35500428(+)$1	244	90	117	21.6548
[eeeeevvvvvvvvvvvvveeeee]bb	chr14:54420040-54420295(-)$1	255	112	139	23.2539
eeee[bbwwwwwwwwwwwwwwbb]eee	chr3:50617666-50617913(+)$1	247	72	99	22.4494
dd[ddddvvvvvvvvvvvvvdddd]dd	chr12:46752323-46752616(-)$1	293	98	125	23.2210
gg!!ddddtttttttttttdddd22gg	chr14:73569724-73570029(+)$1	305	48	75	21.9716
ffff[bbvvvvvvvvvvvvvbb]ffff	chr20:61438735-61439000(+)$1	265	18	45	23.6669
gggggggvvvvvvvvvvvvvggggggg	chr7:150774384-150774630(-)$1	246	126	153	24.6592
ffffffwwwwwwwwwwwwwwffffff:	chr2:27534688-27534969(-)$1	281	180	207	22.0787
gggggggvvvvvvvvvvvvvggggggg	chr16:88876021-88876280(-)$1	259	5	32	24.6592
""eeeeeuuuuuuuuuuuueeeeeggg	chr6:4062274-4062533(+)$1	259	147	174	23.9921
[bb[cccvvvvvvvvvvvvvcccbbhh	chr17:1674957-1675268(+)$1	311	113	140	23.5239
!!ccc[auuuuuuuuuuuua]ccc22f	chr3:48669120-48669382(-)$1	262	124	151	24.1341
ccc!!bbwwwwwwwwwwwwwwbb22cc	chr1:155718041-155718291(+)$1	250	220	247	22.0771
ffffffwwwwwwwwwwwwwwffffff2	chr11:847055-847292(+)$1	237	121	148	22.9531
iifffffftttttttttttffffff77	chr20:32247768-32248006(-)$1	238	120	147	21.1854
ebb[cccwwwwwwwwwwwwwwccc]bb	chr17:74731158-74731384(-)$1	226	121	148	22.5983
iiiiiiitttttttttttiiiiiiiii	chr2:675502-675790(-)$1	288	139	166	22.1528
&&bbcccuuuuuuuuuuuuccc]bb55	chr11:118967648-118967918(-)$1	270	91	118	20.6948
ggggggguuuuuuuuuuuuggggggg4	chr1:245025931-245026172(-)$1	241	42	69	24.3441
ffff!!auuuuuuuuuuuua22fffff	chr9:138773525-138773781(-)$1	256	16	43	23.8974
ebb[cccwwwwwwwwwwwwwwccc]bb	chr17:74731138-74731358(-)$1	220	95	122	22.5983
f[eeeeevvvvvvvvvvvvveeeee22	chr11:62609081-62609293(-)$1	212	163	190	24.3602
eee!!bbwwwwwwwwwwwwwwbb22ee	chrX:17763969-17764276(+)$1	307	167	194	22.0785
hhhhhhhttttttttttthhhhhhhh2	chr12:122237764-122238015(-)$1	251	48	75	19.5865
eeeeddddtttttttttttdddd]eee	chrX:20252795-20253086(-)$1	291	87	114	22.0635
cc[cccxxxxxxxxxxxxxxxcccccc	chr20:60709068-60709334(+)$1	266	186	213	17.9655
dddeeeeettttttttttteeeee]dd	chr16:67979335-67979598(-)$1	263	191	218	22.0116
f[eeeeevvvvvvvvvvvvveeeee22	chr11:62609033-62609242(-)$1	209	112	139	24.3602
hffffffwwwwwwwwwwwwwwffffff	chr14:24631176-24631478(+)$1	302	152	179	22.6171
eeeeeyyyyyyyyyyyyyyyyeeeeee	chr5:179047898-179048159(-)$1	261	72	99	21.1785
f[eeeeevvvvvvvvvvvvveeeee]f	chr16:89959993-89960247(+)$1	254	83	110	24.3739

#otherMatches

#Seq PSSM
UUGUAUGGACAUUCUGCACCCGAAACU	chr10:113942546-113942790(-)$1	244	159	186	21.9923
GCUGCCUCGUACCCAGCCAGACGGCAC	chr11:71718364-71718621(-)$1	257	143	170	19.7082
CUGGAGGAGAGUGAGAAGGCCAUGCAG	chr17:79986818-79987071(+)$1	253	171	198	22.6784
UGAAAGUGGACCUUUAAAAGCUUGUCA	chr4:83345895-83346193(-)$1	298	89	116	23.2720
AUUAGAACGAAUGCCCAAAGUUGUGCC	chr14:24034801-24035051(-)$1	250	104	131	22.7069
UGCAGCCCCAUGCUUUAUUUCUGCAGG	chr17:17722945-17723182(-)$1	237	117	144	18.2742
UCGGGACGGAAGUUAAGUAGCCCCGAG	chr3:184080974-184081250(+)$1	276	94	121	24.3057
GAGACUGAGGACAAUGAUAACAGUUUG	chr17:73237663-73237933(-)$1	270	210	237	24.1724
ACAUGCUUAAUCCUGAGUAGCAGUGUU	chr12:46751923-46752165(-)$1	242	179	206	21.6360
CCUGCCUUCACUCUCUCAUGGGUGGCC	chr3:48664377-48664627(-)$1	250	88	115	23.5874
UGUACAUUUCCAGAGCCUUGUGUAUAU	chr1:31404293-31404574(-)$1	281	34	61	24.1287
GCGAGAAGAAAAAGGGCCGUUCUGCCA	chr2:101619017-101619268(+)$1	251	168	195	23.3319
GGCUCCUGGAAGGCCUGAUGAGGAGUC	chr2:97533512-97533799(-)$1	287	33	60	24.8224
UCUUUUGUCAUCCUUUCUUUAGGACAG	chr1:146696530-146696836(-)$1	306	156	183	20.8057
GGAAGCCAUUAGUCUCCACGAGUUCCC	chr22:26861408-26861696(-)$1	288	231	258	23.0072
ACUGGGCAAAGUGAAGAAGGGCCGGGC	chr8:145742453-145742751(-)$1	298	63	90	23.8914
AGACCAGGUAAUAUAUGCUCCUGGGCA	chr3:49051492-49051776(+)$1	284	50	77	22.1212
GCCUCACCACGUGUUCCAAGUGGGGCC	chr20:62599214-62599456(-)$1	242	89	116	24.1933
UUUUGCCUCCUCUUUUUUGGUUUUGCU	chr17:56081356-56081611(-)$1	255	212	239	19.4903
GUACGUGGACAAGUACAGGCACAUGCG	chr11:611475-611775(+)$1	300	217	244	24.4329
CGUCACCAAUCCUGGCCUGUGUGUGAC	chr9:96070420-96070744(+)$1	324	155	182	22.3074
gaccugguauugcaguacuuccaggaa	chr11:62609043-62609248(-)$1	205	118	145	24.3602
GGCUGGCCGGUGAUCUAGGGGCUCAUC	chr19:35500184-35500428(+)$1	244	90	117	21.6548
GGGGCUGGAAGAAAAACAGAGCCUGUC	chr14:54420040-54420295(-)$1	255	112	139	23.2539
AGUGUGCUGUUCCCACUUCCUGUUCAU	chr3:50617666-50617913(+)$1	247	72	99	22.4494
CAUAUAUUGUCUGUCCAUAUGUAUUUG	chr12:46752323-46752616(-)$1	293	98	125	23.2210
ACAAGUAUUUAAUAUUAAUGUAUCAGU	chr14:73569724-73570029(+)$1	305	48	75	21.9716
AGGGAGGAGCCAUGAAACCCCCGCCCU	chr20:61438735-61439000(+)$1	265	18	45	23.6669
uguccuuucuccucagucacAAGGACA	chr7:150774384-150774630(-)$1	246	126	153	24.6592
UACCUGGUCCCCCUUCAUUACAGGUAU	chr2:27534688-27534969(-)$1	281	180	207	22.0787
CUGGGGACCUCACCCUCCCAUCCCCAG	chr16:88876021-88876280(-)$1	259	5	32	24.6592
CUUUUCCUUUUGAUGGUGCGGAAAGAG	chr6:4062274-4062533(+)$1	259	147	174	23.9921
GAGCGCUAAACCAGAACCCGAGCCUGG	chr17:1674957-1675268(+)$1	311	113	140	23.5239
AGCUGUGACCUGGCCUCUCCUCAGACA	chr3:48669120-48669382(-)$1	262	124	151	24.1341
GUGUUCCUCUCCAGUUUCCAUGGUUCA	chr1:155718041-155718291(+)$1	250	220	247	22.0771
CUCUGCCCAUCUUUCCUUUUGCAGAGC	chr11:847055-847292(+)$1	237	121	148	22.9531
GAGGCUUGUCUUCCCCACCCAGGCUUA	chr20:32247768-32248006(-)$1	238	120	147	21.1854
AACUUCUUUCUUUUCAAACCUAGAUGU	chr17:74731158-74731384(-)$1	226	121	148	22.5983
UCUGCUGGUGUGUUCCUACAGCAGACG	chr2:675502-675790(-)$1	288	139	166	22.1528
CCUCCGUGUCUCCCUUUCUGCGUGAUU	chr11:118967648-118967918(-)$1	270	91	118	20.6948
AAAGCAGGAUAAAGUCGAGCUGCUUUG	chr1:245025931-245026172(-)$1	241	42	69	24.3441
UUCAGACGGAAAGGGCGAGGGAUGAAG	chr9:138773525-138773781(-)$1	256	16	43	23.8974
AACUUCUUUCUUUUCAAACCUAGAUGU	chr17:74731138-74731358(-)$1	220	95	122	22.5983
gaccugguauugcaguacuuccaggaa	chr11:62609081-62609293(-)$1	212	163	190	24.3602
GGAACCGAAUAUUGUAUCUGACGCAUC	chrX:17763969-17764276(+)$1	307	167	194	22.0785
CUGGGGUGCUCCCUUUCAGCCCCGGAG	chr12:122237764-122238015(-)$1	251	48	75	19.5865
CCUUCAUUUAACUUUAACUGAUGUGAG	chrX:20252795-20253086(-)$1	291	87	114	22.0635
UGUCAGGACGCGAGGAAAACGCUGCAC	chr20:60709068-60709334(+)$1	266	186	213	17.9655
ACUCGGACGAGGAAGAUGAGUCUGCAG	chr16:67979335-67979598(-)$1	263	191	218	22.0116
gaccugguauugcaguacuuccaggaa	chr11:62609033-62609242(-)$1	209	112	139	24.3602
CAUCCUGCUCCUAUUAUCCCCCAGGAU	chr14:24631176-24631478(+)$1	302	152	179	22.6171
ACUUUGUUAUCUAAUUUUCCAAAAGUG	chr5:179047898-179048159(-)$1	261	72	99	21.1785
UCGGAGCUGCCCACGUCCCUGCUCCCG	chr16:89959993-89960247(+)$1	254	83	110	24.3739

#DB
((((.(((...........)))..)).	chr10:113942546-113942790(-)$1	1	159	186	21.9923
))((((((...........)).)))).	chr11:71718364-71718621(-)$1	1	143	170	19.7082
(((.(((............)).).)))	chr17:79986818-79987071(+)$1	1	171	198	22.6784
(((((((............)))).)))	chr4:83345895-83346193(-)$1	1	89	116	23.2720
(.((.(((...........))).))..	chr14:24034801-24035051(-)$1	1	104	131	22.7069
(((((...............)))))))	chr17:17722945-17723182(-)$1	1	117	144	18.2742
(((((.(............).)))))(	chr3:184080974-184081250(+)$1	1	94	121	24.3057
.((((((.............)))))).	chr17:73237663-73237933(-)$1	1	210	237	24.1724
(((((((...........)))).))).	chr12:46751923-46752165(-)$1	1	179	206	21.6360
.((((((............))))))..	chr3:48664377-48664627(-)$1	1	88	115	23.5874
(((((((............))))))))	chr1:31404293-31404574(-)$1	1	34	61	24.1287
((.((((............))))))))	chr2:101619017-101619268(+)$1	1	168	195	23.3319
(((((((.............)))))))	chr2:97533512-97533799(-)$1	1	33	60	24.8224
((((................)))))))	chr1:146696530-146696836(-)$1	1	156	183	20.8057
((((..(............)..)))))	chr22:26861408-26861696(-)$1	1	231	258	23.0072
.((.(((.............))).)))	chr8:145742453-145742751(-)$1	1	63	90	23.8914
...(((((...........)))))...	chr3:49051492-49051776(+)$1	1	50	77	22.1212
(((((((............)))))))(	chr20:62599214-62599456(-)$1	1	89	116	24.1933
....(((...........)))..))))	chr17:56081356-56081611(-)$1	1	212	239	19.4903
(((.(((............))).))))	chr11:611475-611775(+)$1	1	217	244	24.4329
.(((((((...........)).)))))	chr9:96070420-96070744(+)$1	1	155	182	22.3074
(.(((((.............)))))..	chr11:62609043-62609248(-)$1	1	118	145	24.3602
((.(((((...........))).))))	chr19:35500184-35500428(+)$1	1	90	117	21.6548
.(((((.............))))).))	chr14:54420040-54420295(-)$1	1	112	139	23.2539
((((.((..............)).)))	chr3:50617666-50617913(+)$1	1	72	99	22.4494
((.((((.............)))).))	chr12:46752323-46752616(-)$1	1	98	125	23.2210
((..((((...........))))..))	chr14:73569724-73570029(+)$1	1	48	75	21.9716
((((.((.............)).))))	chr20:61438735-61439000(+)$1	1	18	45	23.6669
(((((((.............)))))))	chr7:150774384-150774630(-)$1	1	126	153	24.6592
((((((..............)))))).	chr2:27534688-27534969(-)$1	1	180	207	22.0787
(((((((.............)))))))	chr16:88876021-88876280(-)$1	1	5	32	24.6592
..(((((............))))))))	chr6:4062274-4062533(+)$1	1	147	174	23.9921
.((.(((.............)))))))	chr17:1674957-1675268(+)$1	1	113	140	23.5239
..(((.(............).)))..)	chr3:48669120-48669382(-)$1	1	124	151	24.1341
(((..((..............))..))	chr1:155718041-155718291(+)$1	1	220	247	22.0771
((((((..............)))))).	chr11:847055-847292(+)$1	1	121	148	22.9531
((((((((...........))))))..	chr20:32247768-32248006(-)$1	1	120	147	21.1854
(((.(((..............))).))	chr17:74731158-74731384(-)$1	1	121	148	22.5983
(((((((...........)))))))))	chr2:675502-675790(-)$1	1	139	166	22.1528
..(((((............))).))..	chr11:118967648-118967918(-)$1	1	91	118	20.6948
(((((((............))))))).	chr1:245025931-245026172(-)$1	1	42	69	24.3441
((((..(............)..)))))	chr9:138773525-138773781(-)$1	1	16	43	23.8974
(((.(((..............))).))	chr17:74731138-74731358(-)$1	1	95	122	22.5983
(.(((((.............)))))..	chr11:62609081-62609293(-)$1	1	163	190	24.3602
(((..((..............))..))	chrX:17763969-17764276(+)$1	1	167	194	22.0785
(((((((...........)))))))).	chr12:122237764-122238015(-)$1	1	48	75	19.5865
((((((((...........)))).)))	chrX:20252795-20253086(-)$1	1	87	114	22.0635
((.(((...............))))))	chr20:60709068-60709334(+)$1	1	186	213	17.9655
((((((((...........))))).))	chr16:67979335-67979598(-)$1	1	191	218	22.0116
(.(((((.............)))))..	chr11:62609033-62609242(-)$1	1	112	139	24.3602
(((((((..............))))))	chr14:24631176-24631478(+)$1	1	152	179	22.6171
(((((................)))))(	chr5:179047898-179048159(-)$1	1	72	99	21.1785
(.(((((.............))))).)	chr16:89959993-89960247(+)$1	1	83	110	24.3739

#PSSM
f : 0.18	e : 0.16	g : 0.11	d : 0.09	c : 0.09	[ : 0.09	i : 0.05	! : 0.03	h : 0.03	F : 0.01	= : 0.01	$ : 0.01	+ : 0.01	" : 0.01	& : 0.01	
e : 0.16	f : 0.16	g : 0.11	d : 0.09	[ : 0.09	c : 0.07	b : 0.07	i : 0.05	F : 0.01	= : 0.01	$ : 0.01	+ : 0.01	" : 0.01	! : 0.01	& : 0.01	h : 0.01	
e : 0.24	f : 0.16	b : 0.13	g : 0.09	d : 0.07	c : 0.07	[ : 0.07	i : 0.03	= : 0.01	$ : 0.01	+ : 0.01	! : 0.01	h : 0.01	
e : 0.24	f : 0.16	d : 0.11	[ : 0.11	g : 0.09	b : 0.07	! : 0.05	i : 0.03	c : 0.03	= : 0.01	+ : 0.01	h : 0.01	
e : 0.20	c : 0.16	d : 0.13	f : 0.11	g : 0.09	[ : 0.07	! : 0.07	i : 0.03	a : 0.01	= : 0.01	y : 0.01	b : 0.01	h : 0.01	
c : 0.20	e : 0.16	d : 0.13	f : 0.11	b : 0.09	g : 0.07	[ : 0.03	i : 0.03	y : 0.03	! : 0.03	x : 0.01	= : 0.01	h : 0.01	
c : 0.18	b : 0.13	e : 0.13	d : 0.11	a : 0.07	f : 0.07	g : 0.07	x : 0.03	i : 0.03	y : 0.03	w : 0.03	= : 0.01	v : 0.01	h : 0.01	
u : 0.26	v : 0.24	w : 0.15	t : 0.07	c : 0.05	b : 0.03	x : 0.03	y : 0.03	e : 0.03	d : 0.03	f : 0.01	
t : 0.26	u : 0.26	v : 0.24	w : 0.15	x : 0.03	y : 0.03	
t : 0.26	u : 0.26	v : 0.24	w : 0.15	x : 0.03	y : 0.03	
t : 0.26	u : 0.26	v : 0.24	w : 0.15	x : 0.03	y : 0.03	
t : 0.26	u : 0.26	v : 0.24	w : 0.15	x : 0.03	y : 0.03	
t : 0.26	u : 0.26	v : 0.24	w : 0.15	x : 0.03	y : 0.03	
t : 0.26	u : 0.26	v : 0.24	w : 0.15	x : 0.03	y : 0.03	
t : 0.26	u : 0.26	v : 0.24	w : 0.15	x : 0.03	y : 0.03	
t : 0.26	u : 0.26	v : 0.24	w : 0.15	x : 0.03	y : 0.03	
t : 0.26	u : 0.26	v : 0.24	w : 0.15	x : 0.03	y : 0.03	
t : 0.26	u : 0.26	v : 0.24	w : 0.15	x : 0.03	y : 0.03	
u : 0.26	v : 0.24	t : 0.18	w : 0.15	x : 0.03	y : 0.03	d : 0.01	c : 0.01	i : 0.01	h : 0.01	
v : 0.22	w : 0.15	c : 0.11	d : 0.09	a : 0.07	e : 0.07	b : 0.05	x : 0.03	f : 0.03	i : 0.03	y : 0.03	g : 0.03	h : 0.01	
c : 0.15	e : 0.15	d : 0.11	f : 0.11	w : 0.11	g : 0.09	b : 0.07	] : 0.03	i : 0.03	2 : 0.03	= : 0.01	h : 0.01	x : 0.01	y : 0.01	
c : 0.20	e : 0.18	f : 0.13	d : 0.11	g : 0.09	b : 0.07	] : 0.05	2 : 0.05	i : 0.03	= : 0.01	h : 0.01	
e : 0.20	f : 0.15	d : 0.13	] : 0.11	c : 0.11	g : 0.09	b : 0.05	2 : 0.03	i : 0.03	a : 0.01	= : 0.01	h : 0.01	
e : 0.24	f : 0.18	] : 0.09	g : 0.09	c : 0.09	2 : 0.07	b : 0.07	d : 0.05	i : 0.03	= : 0.01	h : 0.01	
e : 0.20	f : 0.18	b : 0.11	g : 0.11	] : 0.09	2 : 0.07	d : 0.05	c : 0.05	i : 0.03	= : 0.01	3 : 0.01	h : 0.01	
e : 0.15	f : 0.15	g : 0.13	d : 0.11	b : 0.09	2 : 0.09	c : 0.07	3 : 0.03	i : 0.03	h : 0.03	= : 0.01	7 : 0.01	5 : 0.01	] : 0.01	
2 : 0.13	f : 0.13	e : 0.13	d : 0.11	g : 0.09	c : 0.07	b : 0.05	] : 0.03	: : 0.03	3 : 0.03	i : 0.03	= : 0.01	a : 0.01	h : 0.01	7 : 0.01	5 : 0.01	4 : 0.01	

#score	1201.590533897258
#seq	53
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_UTR_m1_run2.txt

#BEAR
c[ccctttttttttttccc]cc	chr21:40570900-40571175(-)$1	275	167	189	21.5340
###bbtttttttttttbb4444	chr7:99634435-99634670(+)$1	235	16	38	20.6438
[ddddvvvvvvvvvvvvvdddd	chr7:99173310-99173565(+)$1	255	59	81	23.0625
[ddddvvvvvvvvvvvvvdddd	chr13:45150555-45150887(-)$1	332	75	97	23.0625
!cccyyyyyyyyyyyyyyyycc	chr6:41751595-41751852(+)$1	257	215	237	20.8997
ddddvvvvvvvvvvvvvdddd:	chr16:24802647-24802909(+)$1	262	23	45	21.1323
ddd[auuuuuuuuuuuua]ddd	chr16:68600693-68600950(+)$1	257	67	89	22.8744
fffffyyyyyyyyyyyyyyyyf	chr3:42687277-42687560(+)$1	283	8	30	20.0280
[ddddwwwwwwwwwwwwwwddd	chr6:56380262-56380534(-)$1	272	110	132	21.8213
eeeeettttttttttteeeee:	chr1:203769229-203769474(+)$1	245	70	92	20.8766
geeeeettttttttttteeeee	chr6:64422321-64422575(+)$1	254	152	174	21.9465
=====wwwwwwwwwwwwww===	chr16:30792789-30793045(-)$1	256	62	84	21.8646
gggggyyyyyyyyyyyyyyyyg	chr15:34673033-34673280(-)$1	247	17	39	20.7290
hhhhhuuuuuuuuuuuuhhhhh	chr22:36906828-36907129(-)$1	301	194	216	20.7257
[ddddwwwwwwwwwwwwwwddd	chr16:24801263-24801534(+)$1	271	152	174	21.8213
[bb[bbtttttttttttbbbb]	chr12:133500991-133501270(-)$1	279	83	105	20.4355
bb[ccctttttttttttccc22	chr7:151873384-151873696(-)$1	312	16	38	21.0704
=====vvvvvvvvvvvvv====	chr5:70798329-70798601(+)$1	272	50	72	23.1112
fff[awwwwwwwwwwwwwwaff	chr4:151935713-151935976(-)$1	263	35	57	20.8195
eeeeevvvvvvvvvvvvveeee	chr4:40122398-40122647(+)$1	249	215	237	22.9482
eeeeevvvvvvvvvvvvveeee	chr3:42685354-42685595(+)$1	241	15	37	22.9482
eeeeeyyyyyyyyyyyyyyyye	chr14:73577497-73577782(+)$1	285	178	200	20.8897
ddddvvvvvvvvvvvvvdddd:	chr16:24802557-24802842(+)$1	285	113	135	21.1323
"eeeeettttttttttteeeee	chr17:66422009-66422269(+)$1	260	173	195	22.0609
""ddddtttttttttttdddd3	chr12:105531584-105531845(+)$1	261	106	128	22.0071
:cccwwwwwwwwwwwwwwccc:	chr4:40123378-40123628(+)$1	250	31	53	19.3995
fffffuuuuuuuuuuuufffff	chr9:79922788-79923112(+)$1	324	160	182	21.5629
eeeeeuuuuuuuuuuuueeeee	chr3:42678283-42678489(+)$1	206	33	55	23.0383
[ddddvvvvvvvvvvvvvdddd	chr6:146264570-146264843(-)$1	273	67	89	23.0625
!dddduuuuuuuuuuuudddd2	chr19:40539589-40539809(-)$1	220	176	198	23.1570
eeeeevvvvvvvvvvvvveeee	chr21:40571230-40571571(-)$1	341	133	155	22.9482
"""bbtttttttttttbb]ddd	chr3:121414612-121414843(-)$1	231	191	213	20.7904
!!cccvvvvvvvvvvvvvccc2	chr1:203767971-203768206(+)$1	235	152	174	23.0141
=====wwwwwwwwwwwwww===	chr1:237060962-237061218(+)$1	256	189	211	21.8646
fffffftttttttttttfffff	chr19:12638424-12638684(-)$1	260	180	202	20.3724
eeeeevvvvvvvvvvvvveeee	chr22:29938766-29939034(-)$1	268	67	89	22.9482
eeeeettttttttttteeeee:	chr7:99634422-99634635(+)$1	213	48	70	20.8766
[dddduuuuuuuuuuuuddddd	chr16:22360481-22360773(-)$1	292	25	47	23.1544
=====wwwwwwwwwwwwww===	chr14:75287760-75288041(+)$1	281	196	218	21.8646
hcccwwwwwwwwwwwwwwccc]	chr17:66540278-66540534(+)$1	256	86	108	21.1877
hhhhhvvvvvvvvvvvvvhhhh	chr16:89350300-89350663(-)$1	363	308	330	20.9431
eeeeettttttttttteeeeeB	chr15:34673331-34673546(-)$1	215	10	32	20.8491
cc[bbvvvvvvvvvvvvvbb]c	chr17:37565320-37565626(-)$1	306	118	140	21.6540
ee[bbyyyyyyyyyyyyyyyyb	chr3:123665975-123666255(-)$1	280	201	223	20.1494
eeeeettttttttttteeeeeB	chr15:34673346-34673560(-)$1	214	24	46	20.8491
[dddduuuuuuuuuuuudddd]	chr12:26589060-26589282(-)$1	222	4	26	23.3283
e[cccuuuuuuuuuuuucccee	chr4:419963-420201(-)$1	238	204	226	23.0146
iiiiiwwwwwwwwwwwwwwiii	chr4:187629408-187629661(-)$1	253	187	209	21.6368
$eeeeettttttttttteeeee	chr2:71654415-71654645(+)$1	230	36	58	21.8047
eeeeeyyyyyyyyyyyyyyyye	chr16:23647209-23647491(-)$1	282	50	72	20.8897
eeeeettttttttttteeeee:	chr7:99634369-99634607(+)$1	238	101	123	20.8766
!cccwwwwwwwwwwwwwwccc]	chr9:117073584-117073833(+)$1	249	70	92	21.5931
cc[bbuuuuuuuuuuuubb]cc	chr16:89816165-89816405(-)$1	240	140	162	21.9272
!dddduuuuuuuuuuuudddd2	chr16:239181-239439(-)$1	258	210	232	23.1570
gdddduuuuuuuuuuuudddd]	chr1:46073091-46073344(+)$1	253	152	174	23.0955
ggggguuuuuuuuuuuuggggg	chr19:53115999-53116248(-)$1	249	75	97	22.6313
""ddddtttttttttttdddd3	chr1:70716365-70716657(+)$1	292	143	165	22.0071
[bb[bbtttttttttttbb]bb	chr22:31363728-31363991(-)$1	263	112	134	20.3147
!!ddddtttttttttttdddd2	chr12:110468389-110468663(+)$1	274	138	160	22.0310
!bbccctttttttttttccc]b	chr14:23528247-23528477(-)$1	230	171	193	21.3925
=====uuuuuuuuuuuu=====	chr1:203766397-203766659(+)$1	262	174	196	23.2875
eeeeewwwwwwwwwwwwwweee	chr18:32917422-32917688(-)$1	266	5	27	21.7079
fffffuuuuuuuuuuuufffff	chr8:82598417-82598681(-)$1	264	195	217	21.5629
======ttttttttttt=====	chr15:34671241-34671500(-)$1	259	173	195	22.1008
!!cccuuuuuuuuuuuuccc22	chrX:9686735-9687010(+)$1	275	131	153	22.9685
[eeeeettttttttttteeeee	chr7:151877940-151878166(-)$1	226	150	172	22.1792
[ddddyyyyyyyyyyyyyyyyd	chr19:58371449-58371750(+)$1	301	9	31	20.9893
gggggwwwwwwwwwwwwwwggg	chr9:134350321-134350552(+)$1	231	11	33	21.4104
======ttttttttttt=====	chr3:42674153-42674396(+)$1	243	162	184	22.1008
ddddwwwwwwwwwwwwwwdddd	chr6:111696966-111697249(-)$1	283	26	48	21.1325

#otherMatches

#Seq PSSM
UGUGCAGAAACUUAAGGCAGAG	chr21:40570900-40571175(-)$1	275	167	189	21.5340
UUUGGUUUUUUUUUUUCUUUCA	chr7:99634435-99634670(+)$1	235	16	38	20.6438
AUCAAUCCAGGACAGUAUUUGA	chr7:99173310-99173565(+)$1	255	59	81	23.0625
AGCCCAGGGGGUUUGAAAGGGU	chr13:45150555-45150887(-)$1	332	75	97	23.0625
AAGGAGAAAGGAAAGAAAAACC	chr6:41751595-41751852(+)$1	257	215	237	20.8997
AUCCAAAUAAUUCAUCAGGAUG	chr16:24802647-24802909(+)$1	262	23	45	21.1323
GAAGUUUAUAAAACCUUAGUUC	chr16:68600693-68600950(+)$1	257	67	89	22.8744
GUUUUCAAGCCACUCAUAUAAA	chr3:42687277-42687560(+)$1	283	8	30	20.0280
CAGAUUAAUUCAGAAAGGUAUC	chr6:56380262-56380534(-)$1	272	110	132	21.8213
CCUUUAAUUUACUGGCAGAGGA	chr1:203769229-203769474(+)$1	245	70	92	20.8766
ACUUCAGAAAGCAAAGAUGGAG	chr6:64422321-64422575(+)$1	254	152	174	21.9465
UCCCCCAAAAAAAUUACAUGGG	chr16:30792789-30793045(-)$1	256	62	84	21.8646
GUGCUUUUCUAAUGUUAUUGCA	chr15:34673033-34673280(-)$1	247	17	39	20.7290
AGAUGAAAUAAAAUAUAUAUCU	chr22:36906828-36907129(-)$1	301	194	216	20.7257
GUGAGCACAAUGAAUCAUCCUC	chr16:24801263-24801534(+)$1	271	152	174	21.8213
ggaagggaaacaauaaaucucg	chr12:133500991-133501270(-)$1	279	83	105	20.4355
GUUUGCCUCCUUUCAUAGCACC	chr7:151873384-151873696(-)$1	312	16	38	21.0704
UGGUGACUUCAAAAUAAACAUU	chr5:70798329-70798601(+)$1	272	50	72	23.1112
AGGACUUUCCACAUCAACUGCU	chr4:151935713-151935976(-)$1	263	35	57	20.8195
GACUUGUCUAAGUAAAAAGAGU	chr4:40122398-40122647(+)$1	249	215	237	22.9482
UGUUUGUUGUUGCCGUUAAAGC	chr3:42685354-42685595(+)$1	241	15	37	22.9482
GCCUUGUCUGAAACCUACUCUG	chr14:73577497-73577782(+)$1	285	178	200	20.8897
AUCCAAAUAAUUCAUCAGGAUG	chr16:24802557-24802842(+)$1	285	113	135	21.1323
UGAGCCGCCCAGUUACGGGUUC	chr17:66422009-66422269(+)$1	260	173	195	22.0609
ACCAUUAUUAAAACCACAAUGA	chr12:105531584-105531845(+)$1	261	106	128	22.0071
GGUCUAAAGAAUAAUAAUGACA	chr4:40123378-40123628(+)$1	250	31	53	19.3995
CUGUAACAAAAGACCAAUACAG	chr9:79922788-79923112(+)$1	324	160	182	21.5629
CAUGCUUAUAAAUCACCGCAUG	chr3:42678283-42678489(+)$1	206	33	55	23.0383
GUUCCAUCCACAAAAAAAGGAA	chr6:146264570-146264843(-)$1	273	67	89	23.0625
AUCUGCUUACGCAACAUCAGAA	chr19:40539589-40539809(-)$1	220	176	198	23.1570
UGGCUGCCAAUAAAAUAAAGCU	chr21:40571230-40571571(-)$1	341	133	155	22.9482
CCUGUGAAAGUCUAAAACUAGC	chr3:121414612-121414843(-)$1	231	191	213	20.7904
UCCACUGACUAUUUUAUUGUGA	chr1:203767971-203768206(+)$1	235	152	174	23.0141
CUUGCGUGAAGAGCAGUGAGCA	chr1:237060962-237061218(+)$1	256	189	211	21.8646
CCAUAUAAAUGUAAGCAGUGUG	chr19:12638424-12638684(-)$1	260	180	202	20.3724
UCUGAUCGUAUUUUCCUUUCAG	chr22:29938766-29939034(-)$1	268	67	89	22.9482
UCAGCCACAACUAUAUGCUGAU	chr7:99634422-99634635(+)$1	213	48	70	20.8766
GAAUGCCUGCAAACCAACAUUG	chr16:22360481-22360773(-)$1	292	25	47	23.1544
UUUCCAUAAUCAUCUUCAAGGA	chr14:75287760-75288041(+)$1	281	196	218	21.8646
GUGGGGGAAAUACGUGGACCAU	chr17:66540278-66540534(+)$1	256	86	108	21.1877
CAGGGACAUGAAGAGCGACUCU	chr16:89350300-89350663(-)$1	363	308	330	20.9431
AUUCAUUUACUUCAUUUGAAUG	chr15:34673331-34673546(-)$1	215	10	32	20.8491
ACAGCAAACCAGGGAAGCGCAG	chr17:37565320-37565626(-)$1	306	118	140	21.6540
GCCUGCCCAAAACUGACAUAUC	chr3:123665975-123666255(-)$1	280	201	223	20.1494
AUUCAUUUACUUCAUUUGAAUG	chr15:34673346-34673560(-)$1	214	24	46	20.8491
UAACCCUGCACUGUUCUGGUUC	chr12:26589060-26589282(-)$1	222	4	26	23.3283
UUGACCACCCAUUACAUGUCAG	chr4:419963-420201(-)$1	238	204	226	23.0146
CAAAUUUAAAUCAUGUGCCGUU	chr4:187629408-187629661(-)$1	253	187	209	21.6368
AGACAAAACUUGAAUCCUUGUC	chr2:71654415-71654645(+)$1	230	36	58	21.8047
GCUGCCAAGCAGAAGAAAGAAG	chr16:23647209-23647491(-)$1	282	50	72	20.8897
UCAGCCACAACUAUAUGCUGAU	chr7:99634369-99634607(+)$1	238	101	123	20.8766
AGGUGCUACCAUUAUUUUGCCA	chr9:117073584-117073833(+)$1	249	70	92	21.5931
CUCGGCCACACCCCUUCCCAGG	chr16:89816165-89816405(-)$1	240	140	162	21.9272
AGGUCAGAAGAGAAGGAGGCCG	chr16:239181-239439(-)$1	258	210	232	23.1570
GGACCGAAUGAAGCUGAGGUCA	chr1:46073091-46073344(+)$1	253	152	174	23.0955
GCCUUUAGUUUUUGUUCAAGGC	chr19:53115999-53116248(-)$1	249	75	97	22.6313
CAACUGUAUACCUGCAUCAGUG	chr1:70716365-70716657(+)$1	292	143	165	22.0071
AGUCAUGGCUUUCACAAAUUAC	chr22:31363728-31363991(-)$1	263	112	134	20.3147
UAUCUCAAAAUGUGGAAGGGAC	chr12:110468389-110468663(+)$1	274	138	160	22.0310
AUGGCCACAGAGGGAUAGGCAC	chr14:23528247-23528477(-)$1	230	171	193	21.3925
AGAGAGGAACAGCUGUAUUUCU	chr1:203766397-203766659(+)$1	262	174	196	23.2875
CUUCAGCAUUAGAAUCCCAUGA	chr18:32917422-32917688(-)$1	266	5	27	21.7079
GUGAGACCGUUAUUUUCCUCAC	chr8:82598417-82598681(-)$1	264	195	217	21.5629
CAUUAUUGACUGCUGAUGUGAU	chr15:34671241-34671500(-)$1	259	173	195	22.1008
UCGGACCCCAGGCUCCAUCCCU	chrX:9686735-9687010(+)$1	275	131	153	22.9685
CUGACUCUUUUGGAACAAGUCA	chr7:151877940-151878166(-)$1	226	150	172	22.1792
GCUCUACCCUCCUUCAUCAUCA	chr19:58371449-58371750(+)$1	301	9	31	20.9893
GGGACCCAUCAAGAAACCAGUC	chr9:134350321-134350552(+)$1	231	11	33	21.4104
GUACGUGUAAAACACCAAUGUA	chr3:42674153-42674396(+)$1	243	162	184	22.1008
UUUCAAGAACAUAAAACAGAAA	chr6:111696966-111697249(-)$1	283	26	48	21.1325

#DB
(.(((...........))).))	chr21:40570900-40571175(-)$1	1	167	189	21.5340
...((...........))....	chr7:99634435-99634670(+)$1	1	16	38	20.6438
.((((.............))))	chr7:99173310-99173565(+)$1	1	59	81	23.0625
.((((.............))))	chr13:45150555-45150887(-)$1	1	75	97	23.0625
.(((................))	chr6:41751595-41751852(+)$1	1	215	237	20.8997
((((.............)))).	chr16:24802647-24802909(+)$1	1	23	45	21.1323
(((.(............).)))	chr16:68600693-68600950(+)$1	1	67	89	22.8744
(((((................)	chr3:42687277-42687560(+)$1	1	8	30	20.0280
.((((..............)))	chr6:56380262-56380534(-)$1	1	110	132	21.8213
(((((...........))))).	chr1:203769229-203769474(+)$1	1	70	92	20.8766
((((((...........)))))	chr6:64422321-64422575(+)$1	1	152	174	21.9465
(((((..............)))	chr16:30792789-30793045(-)$1	1	62	84	21.8646
(((((................)	chr15:34673033-34673280(-)$1	1	17	39	20.7290
(((((............)))))	chr22:36906828-36907129(-)$1	1	194	216	20.7257
.((((..............)))	chr16:24801263-24801534(+)$1	1	152	174	21.8213
.((.((...........)))).	chr12:133500991-133501270(-)$1	1	83	105	20.4355
((.(((...........)))..	chr7:151873384-151873696(-)$1	1	16	38	21.0704
(((((.............))))	chr5:70798329-70798601(+)$1	1	50	72	23.1112
(((.(..............)))	chr4:151935713-151935976(-)$1	1	35	57	20.8195
(((((.............))))	chr4:40122398-40122647(+)$1	1	215	237	22.9482
(((((.............))))	chr3:42685354-42685595(+)$1	1	15	37	22.9482
(((((................)	chr14:73577497-73577782(+)$1	1	178	200	20.8897
((((.............)))).	chr16:24802557-24802842(+)$1	1	113	135	21.1323
.(((((...........)))))	chr17:66422009-66422269(+)$1	1	173	195	22.0609
..((((...........)))).	chr12:105531584-105531845(+)$1	1	106	128	22.0071
.(((..............))).	chr4:40123378-40123628(+)$1	1	31	53	19.3995
(((((............)))))	chr9:79922788-79923112(+)$1	1	160	182	21.5629
(((((............)))))	chr3:42678283-42678489(+)$1	1	33	55	23.0383
.((((.............))))	chr6:146264570-146264843(-)$1	1	67	89	23.0625
.((((............)))).	chr19:40539589-40539809(-)$1	1	176	198	23.1570
(((((.............))))	chr21:40571230-40571571(-)$1	1	133	155	22.9482
...((...........)).)))	chr3:121414612-121414843(-)$1	1	191	213	20.7904
..(((.............))).	chr1:203767971-203768206(+)$1	1	152	174	23.0141
(((((..............)))	chr1:237060962-237061218(+)$1	1	189	211	21.8646
((((((...........)))))	chr19:12638424-12638684(-)$1	1	180	202	20.3724
(((((.............))))	chr22:29938766-29939034(-)$1	1	67	89	22.9482
(((((...........))))).	chr7:99634422-99634635(+)$1	1	48	70	20.8766
.((((............)))))	chr16:22360481-22360773(-)$1	1	25	47	23.1544
(((((..............)))	chr14:75287760-75288041(+)$1	1	196	218	21.8646
((((..............))).	chr17:66540278-66540534(+)$1	1	86	108	21.1877
(((((.............))))	chr16:89350300-89350663(-)$1	1	308	330	20.9431
(((((...........)))))(	chr15:34673331-34673546(-)$1	1	10	32	20.8491
((.((.............)).)	chr17:37565320-37565626(-)$1	1	118	140	21.6540
((.((................)	chr3:123665975-123666255(-)$1	1	201	223	20.1494
(((((...........)))))(	chr15:34673346-34673560(-)$1	1	24	46	20.8491
.((((............)))).	chr12:26589060-26589282(-)$1	1	4	26	23.3283
(.(((............)))))	chr4:419963-420201(-)$1	1	204	226	23.0146
(((((..............)))	chr4:187629408-187629661(-)$1	1	187	209	21.6368
.(((((...........)))))	chr2:71654415-71654645(+)$1	1	36	58	21.8047
(((((................)	chr16:23647209-23647491(-)$1	1	50	72	20.8897
(((((...........))))).	chr7:99634369-99634607(+)$1	1	101	123	20.8766
.(((..............))).	chr9:117073584-117073833(+)$1	1	70	92	21.5931
((.((............)).))	chr16:89816165-89816405(-)$1	1	140	162	21.9272
.((((............)))).	chr16:239181-239439(-)$1	1	210	232	23.1570
(((((............)))).	chr1:46073091-46073344(+)$1	1	152	174	23.0955
(((((............)))))	chr19:53115999-53116248(-)$1	1	75	97	22.6313
..((((...........)))).	chr1:70716365-70716657(+)$1	1	143	165	22.0071
.((.((...........)).))	chr22:31363728-31363991(-)$1	1	112	134	20.3147
..((((...........)))).	chr12:110468389-110468663(+)$1	1	138	160	22.0310
.(((((...........))).)	chr14:23528247-23528477(-)$1	1	171	193	21.3925
(((((............)))))	chr1:203766397-203766659(+)$1	1	174	196	23.2875
(((((..............)))	chr18:32917422-32917688(-)$1	1	5	27	21.7079
(((((............)))))	chr8:82598417-82598681(-)$1	1	195	217	21.5629
((((((...........)))))	chr15:34671241-34671500(-)$1	1	173	195	22.1008
..(((............)))..	chrX:9686735-9687010(+)$1	1	131	153	22.9685
.(((((...........)))))	chr7:151877940-151878166(-)$1	1	150	172	22.1792
.((((................)	chr19:58371449-58371750(+)$1	1	9	31	20.9893
(((((..............)))	chr9:134350321-134350552(+)$1	1	11	33	21.4104
((((((...........)))))	chr3:42674153-42674396(+)$1	1	162	184	22.1008
((((..............))))	chr6:111696966-111697249(-)$1	1	26	48	21.1325

#PSSM
e : 0.21	[ : 0.15	! : 0.11	= : 0.10	f : 0.07	g : 0.07	d : 0.05	" : 0.05	c : 0.04	h : 0.04	# : 0.01	b : 0.01	: : 0.01	i : 0.01	$ : 0.01	
e : 0.25	d : 0.21	= : 0.10	c : 0.08	f : 0.07	b : 0.05	g : 0.04	" : 0.04	! : 0.04	[ : 0.02	h : 0.02	# : 0.01	i : 0.01	
d : 0.25	e : 0.24	c : 0.11	= : 0.10	f : 0.07	[ : 0.05	g : 0.04	b : 0.04	h : 0.02	# : 0.01	" : 0.01	i : 0.01	
d : 0.24	e : 0.24	c : 0.14	= : 0.10	b : 0.07	[ : 0.05	f : 0.05	g : 0.04	h : 0.02	i : 0.01	
e : 0.24	d : 0.20	b : 0.10	= : 0.10	c : 0.08	f : 0.05	w : 0.05	g : 0.04	v : 0.02	a : 0.02	h : 0.02	y : 0.01	i : 0.01	
u : 0.21	v : 0.18	w : 0.18	t : 0.11	y : 0.10	e : 0.05	d : 0.04	b : 0.02	c : 0.02	= : 0.02	f : 0.01	
t : 0.31	u : 0.21	v : 0.18	w : 0.18	y : 0.10	
t : 0.31	u : 0.21	v : 0.18	w : 0.18	y : 0.10	
t : 0.31	u : 0.21	v : 0.18	w : 0.18	y : 0.10	
t : 0.31	u : 0.21	v : 0.18	w : 0.18	y : 0.10	
t : 0.31	u : 0.21	v : 0.18	w : 0.18	y : 0.10	
t : 0.31	u : 0.21	v : 0.18	w : 0.18	y : 0.10	
t : 0.31	u : 0.21	v : 0.18	w : 0.18	y : 0.10	
t : 0.31	u : 0.21	v : 0.18	w : 0.18	y : 0.10	
t : 0.31	u : 0.21	v : 0.18	w : 0.18	y : 0.10	
t : 0.31	u : 0.21	v : 0.18	w : 0.18	y : 0.10	
u : 0.21	t : 0.20	v : 0.18	w : 0.18	y : 0.10	e : 0.07	b : 0.02	c : 0.01	
w : 0.18	v : 0.15	d : 0.14	e : 0.14	y : 0.10	c : 0.07	b : 0.07	f : 0.04	= : 0.04	a : 0.01	h : 0.01	g : 0.01	
d : 0.20	e : 0.20	c : 0.12	w : 0.12	y : 0.10	b : 0.05	= : 0.05	f : 0.04	] : 0.02	h : 0.02	4 : 0.01	g : 0.01	
d : 0.25	e : 0.21	c : 0.11	y : 0.10	= : 0.10	] : 0.04	f : 0.04	h : 0.02	b : 0.02	g : 0.02	4 : 0.01	a : 0.01	i : 0.01	
d : 0.25	e : 0.22	c : 0.10	= : 0.10	y : 0.08	f : 0.05	h : 0.02	b : 0.02	2 : 0.02	] : 0.02	g : 0.02	4 : 0.01	i : 0.01	
e : 0.18	d : 0.14	= : 0.10	: : 0.08	2 : 0.08	f : 0.07	] : 0.07	c : 0.05	g : 0.04	b : 0.04	h : 0.02	3 : 0.02	B : 0.02	4 : 0.01	i : 0.01	

#score	1523.2746169496827
#seq	70
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_transcript_m3_run2.txt

#BEAR
!!cccwwwwwwwwwwwwwwccc22	chr22:29346878-29347138(+)$1	260	165	189	20.5855
dddd^^^^^^^^^^^^^^^^^^^^	chr3:114484892-114485176(-)$1	284	70	94	24.7590
!!bbyyyyyyyyyyyyyyyybb22	chr8:120255858-120256070(+)$1	212	142	166	23.5299
eeee^^^^^^^^^^^^^^^^^^^e	chr9:114399699-114399968(+)$1	269	158	182	24.4632
ddddyyyyyyyyyyyyyyyydddd	chr6:3131155-3131436(+)$1	281	113	137	24.3886
[ccc^^^^^^^^^^^^^^^^^^^^	chr3:10304982-10305239(+)$1	257	117	141	24.7928
dddd^^^^^^^^^^^^^^^^^^dd	chr6:42161993-42162288(-)$1	295	230	254	24.0329
eeee^^^^^^^^^^^^^^^^^^^^	chr2:128485303-128485574(-)$1	271	134	158	24.7075
ccccccuuuuuuuuuuuuccc]cc	chr11:115333443-115333733(-)$1	290	136	160	18.6898
[cccyyyyyyyyyyyyyyyycccf	chr3:65361543-65361817(-)$1	274	6	30	24.6811
+cccwwwwwwwwwwwwwwccc>>>	chr5:80361928-80362202(+)$1	274	141	165	19.9285
eeeexxxxxxxxxxxxxxxeeeee	chr17:78644786-78645083(+)$1	297	73	97	22.0486
cccyyyyyyyyyyyyyyyyccc::	chr2:149449579-149449975(+)$1	396	220	244	22.8026
eeeyyyyyyyyyyyyyyyyeeeee	chr6:150031863-150032144(-)$1	281	123	147	23.8937
ffffxxxxxxxxxxxxxxxfffff	chr17:27728925-27729205(+)$1	280	73	97	20.9449
ffff^^^^^^^^^^^^^^^^^^^f	chr9:127261858-127262117(-)$1	259	103	127	23.7849
!cccyyyyyyyyyyyyyyyyccc2	chrX:106184467-106184725(-)$1	258	26	50	24.8164
[bbaxxxxxxxxxxxxxxxa]bb]	chr17:33379467-33379685(-)$1	218	181	205	21.4892
$cccwwwwwwwwwwwwwwccc22e	chr10:64998973-64999246(-)$1	273	203	227	20.0753
ccc^^^^^^^^^^^^^^^^^^ccc	chr12:131469276-131469626(+)$1	350	1	25	23.9775
ccc^^^^^^^^^^^^^^^^^^ccc	chr7:3400915-3401221(+)$1	306	72	96	23.9775
eeeexxxxxxxxxxxxxxxeeeee	chr14:95999649-95999853(-)$1	204	159	183	22.0486
ee[awwwwwwwwwwwwwwa]eeee	chr16:70190839-70191078(+)$1	239	175	199	20.6364
dddd^^^^^^^^^^^^^^^^^^^^	chr16:81657589-81657836(+)$1	247	61	85	24.7590
iiiixxxxxxxxxxxxxxxiiiii	chr16:78764072-78764371(+)$1	299	174	198	21.4955
ccccxxxxxxxxxxxxxxxccc]c	chr22:25489735-25489986(+)$1	251	167	191	22.4326
ddddxxxxxxxxxxxxxxxdddd3	chr4:88350814-88351099(+)$1	285	177	201	22.2884
ggggxxxxxxxxxxxxxxxggggg	chr7:34593228-34593534(-)$1	306	77	101	21.5715
!ccc^^^^^^^^^^^^^^^^^^^^	chr14:36119614-36119896(-)$1	282	76	100	24.8313
dddd^^^^^^^^^^^^^^^^^^^^	chr2:192198261-192198578(+)$1	317	23	47	24.7590
fff^^^^^^^^^^^^^^^^^^^^^	chr19:12592591-12592907(-)$1	316	237	261	24.4524
!cccxxxxxxxxxxxxxxxccc22	chr17:27429429-27429723(-)$1	294	209	233	22.4475
cccyyyyyyyyyyyyyyyyccc::	chr1:167976199-167976442(+)$1	243	67	91	22.8026
dddd^^^^^^^^^^^^^^^^^^^^	chr9:14788673-14788950(-)$1	277	239	263	24.7590
iii^^^^^^^^^^^^^^^^^^iii	chr6:168248231-168248489(+)$1	258	148	172	23.4411
eeee^^^^^^^^^^^^^^^^^^ee	chrX:67482509-67482815(-)$1	306	81	105	24.0986
dddd^^^^^^^^^^^^^^^^^^^^	chr9:14749238-14749517(-)$1	279	107	131	24.7590
ddddwwwwwwwwwwwwwwdddd77	chr14:37783027-37783317(+)$1	290	84	108	19.7195
eeee^^^^^^^^^^^^^^^^^^^^	chr4:120162979-120163260(+)$1	281	52	76	24.7075
fffyyyyyyyyyyyyyyyyfffff	chrX:48328079-48328347(-)$1	268	61	85	22.9452
eeee^^^^^^^^^^^^^^^^^^^e	chr15:41931234-41931578(+)$1	344	88	112	24.4632
eeeexxxxxxxxxxxxxxxeeeee	chr11:46057151-46057498(-)$1	347	246	270	22.0486
^^^^^^^^^^^^^^^^^^^^^^^^	chr11:120241359-120241637(+)$1	278	143	167	24.3296
ffff^^^^^^^^^^^^^^^^^^^^	chr2:218705647-218705976(-)$1	329	13	37	24.1397
ddddyyyyyyyyyyyyyyyydddd	chr6:16748286-16748550(-)$1	264	105	129	24.3886
ccc^^^^^^^^^^^^^^^^^^ccc	chr21:37076660-37076907(-)$1	247	89	113	23.9775
ee[cccvvvvvvvvvvvvvccc33	chr4:113169944-113170249(+)$1	305	201	225	18.1705
dddd^^^^^^^^^^^^^^^^^^^^	chr2:223758426-223758664(+)$1	238	69	93	24.7590
ffbb^^^^^^^^^^^^^^^^^^^b	chr15:91554047-91554411(-)$1	364	85	109	23.4300
eeeexxxxxxxxxxxxxxxeeeee	chr22:24499055-24499344(+)$1	289	112	136	22.0486
gggg^^^^^^^^^^^^^^^^^^gg	chr1:211987038-211987315(-)$1	277	13	37	23.7506
^^^^^^^^^^^^^^^^^^^^^bb]	chr13:45936671-45936921(+)$1	250	78	102	23.0367
ddddyyyyyyyyyyyyyyyydddd	chr12:1836013-1836386(+)$1	373	97	121	24.3886
eeeeewwwwwwwwwwwwwweeeee	chr1:167977616-167977871(+)$1	255	12	36	20.1643
cccyyyyyyyyyyyyyyyyccc33	chr10:65206101-65206398(-)$1	297	120	144	24.6642
^^^^^^^^^^^^^^^^^^^dddd]	chr6:158715671-158715893(+)$1	222	89	113	22.0204
^^^^^^^^^^^^^^^^^^^^^^cc	chr4:151502969-151503238(-)$1	269	12	36	23.7655
ddddxxxxxxxxxxxxxxxdddde	chr6:111687508-111687850(-)$1	342	13	37	22.0639
ddddxxxxxxxxxxxxxxxdddd>	chr14:103922650-103922947(+)$1	297	89	113	22.0745
ddddxxxxxxxxxxxxxxxdddd:	chr13:53046010-53046358(+)$1	348	259	283	21.3435
ddddyyyyyyyyyyyyyyyydddd	chr14:23541397-23541630(-)$1	233	139	163	24.3886
eeee^^^^^^^^^^^^^^^^^^^^	chr1:42783252-42783528(-)$1	276	15	39	24.7075
iiiiiwwwwwwwwwwwwwwiiiii	chrX:108909369-108909705(-)$1	336	288	312	19.4191
eeeyyyyyyyyyyyyyyyyeeeee	chr12:28456218-28456481(+)$1	263	29	53	23.8937

#otherMatches

#Seq PSSM
AAAAUUAUUCAUUUAACUUAUUCC	chr22:29346878-29347138(+)$1	260	165	189	20.5855
CAGCUAGCCUUCUCAUAUUCCCUC	chr3:114484892-114485176(-)$1	284	70	94	24.7590
UCCAUAAAAUACAAAUAUAUUGUU	chr8:120255858-120256070(+)$1	212	142	166	23.5299
CACUUACAUUUUUUCCUUUCUUUG	chr9:114399699-114399968(+)$1	269	158	182	24.4632
auccuuaaauucucuccacugggu	chr6:3131155-3131436(+)$1	281	113	137	24.3886
uucucuaccuucuuucucuuauuu	chr3:10304982-10305239(+)$1	257	117	141	24.7928
GGUCCUCUCUUUGUGUAUUUUUGA	chr6:42161993-42162288(-)$1	295	230	254	24.0329
UCUGUAUCCUUCCUUGUUUCCACC	chr2:128485303-128485574(-)$1	271	134	158	24.7075
UCCCACUGCCUUUCUUAUGUGUGG	chr11:115333443-115333733(-)$1	290	136	160	18.6898
GCUCCUUAUACAGACACCCUGAGU	chr3:65361543-65361817(-)$1	274	6	30	24.6811
UCCCUUUCUAUUCUCUUUGGGUAA	chr5:80361928-80362202(+)$1	274	141	165	19.9285
AGUAUUUCCUCUUCUGUUUUGCUG	chr17:78644786-78645083(+)$1	297	73	97	22.0486
gacuuuucucacucuaccugucuu	chr2:149449579-149449975(+)$1	396	220	244	22.8026
caaaucuacuacuuccuucuugaa	chr6:150031863-150032144(-)$1	281	123	147	23.8937
CUUCUAAUCUUCUGUCUCUGAAGU	chr17:27728925-27729205(+)$1	280	73	97	20.9449
UCAGUACUCAUUUCCCUCAUUCUC	chr9:127261858-127262117(-)$1	259	103	127	23.7849
UGUAUACCCUUCUCUUCUCUUAUC	chrX:106184467-106184725(-)$1	258	26	50	24.8164
CCUCAUUCUCUCCUCAUUAGCAGU	chr17:33379467-33379685(-)$1	218	181	205	21.4892
CAGUUUUCUUCCUCACCUACUCUG	chr10:64998973-64999246(-)$1	273	203	227	20.0753
GGAUUGUUuuucuuucuuuuuucc	chr12:131469276-131469626(+)$1	350	1	25	23.9775
GUGUUCCUUGUUCUUCUAUUCCAC	chr7:3400915-3401221(+)$1	306	72	96	23.9775
AGUUACUUUUUUUUUUUUAAACUU	chr14:95999649-95999853(-)$1	204	159	183	22.0486
CCCCUCACUCAGCUUCUCGUGGUG	chr16:70190839-70191078(+)$1	239	175	199	20.6364
CCUCUUUAUUUACAACCACCUAUU	chr16:81657589-81657836(+)$1	247	61	85	24.7590
GCAUUAUCAUAUAAGCCACGUGCU	chr16:78764072-78764371(+)$1	299	174	198	21.4955
AGGCACUUUGCCAGCCCCCGCCUU	chr22:25489735-25489986(+)$1	251	167	191	22.4326
CUUAUUUCCUAGCCCAUAUUAAGA	chr4:88350814-88351099(+)$1	285	177	201	22.2884
caguuaaauucuuuucuauacuga	chr7:34593228-34593534(-)$1	306	77	101	21.5715
GAGGCUUUCAUAGUUUUUUCUUUU	chr14:36119614-36119896(-)$1	282	76	100	24.8313
gagacucacaagccaccacccauu	chr2:192198261-192198578(+)$1	317	23	47	24.7590
uaacuguaaccucgaacaccuuuc	chr19:12592591-12592907(-)$1	316	237	261	24.4524
ucagcucuuuucucucucucuguU	chr17:27429429-27429723(-)$1	294	209	233	22.4475
gacuauuuuacacuuucaugucuc	chr1:167976199-167976442(+)$1	243	67	91	22.8026
UCCAuucguuauuuuaaaaaguuu	chr9:14788673-14788950(-)$1	277	239	263	24.7590
aggcuaacuucauaucucccaccu	chr6:168248231-168248489(+)$1	258	148	172	23.4411
GACAUUUGUuccuuuccuuuccug	chrX:67482509-67482815(-)$1	306	81	105	24.0986
GGAAUCUAUUCCCUUCUCUUCUCU	chr9:14749238-14749517(-)$1	279	107	131	24.7590
AUCCUUCAACCUUUCCUUGGGUUU	chr14:37783027-37783317(+)$1	290	84	108	19.7195
cugaugcucucuuuauuuucuuuc	chr4:120162979-120163260(+)$1	281	52	76	24.7075
AGCCUAUCCCUACCCACCUGUUUG	chrX:48328079-48328347(-)$1	268	61	85	22.9452
GGGAUCAUAAUGUCUUCUUUUUUU	chr15:41931234-41931578(+)$1	344	88	112	24.4632
acacauccuucaagucucagugua	chr11:46057151-46057498(-)$1	347	246	270	22.0486
guuucuuccuucccaucccccauu	chr11:120241359-120241637(+)$1	278	143	167	24.3296
CGCCCCCUCCUCUCCACCGGCUCC	chr2:218705647-218705976(-)$1	329	13	37	24.1397
GGUGUUUUCUCCCUUUCUUUCACU	chr6:16748286-16748550(-)$1	264	105	129	24.3886
ccuuuuuucuuuuuuucuuauagg	chr21:37076660-37076907(-)$1	247	89	113	23.9775
ccuacauaaaauaaccuccuguuc	chr4:113169944-113170249(+)$1	305	201	225	18.1705
cccuccucugccucuucucACCUC	chr2:223758426-223758664(+)$1	238	69	93	24.7590
CUGCUUUCCUUCUCCAUUAUCUUG	chr15:91554047-91554411(-)$1	364	85	109	23.4300
GGCCUAUCCUCCCAGUUCUGGCCA	chr22:24499055-24499344(+)$1	289	112	136	22.0486
aaucauugCUCUACAACAUUCAGA	chr1:211987038-211987315(-)$1	277	13	37	23.7506
uuguauauuuaucucuuuucugcc	chr13:45936671-45936921(+)$1	250	78	102	23.0367
gucaucuuucuauauuucauugac	chr12:1836013-1836386(+)$1	373	97	121	24.3886
cuugauuccuuccuuuuccucaag	chr1:167977616-167977871(+)$1	255	12	36	20.1643
ggucacaucuauuccuauaaccuu	chr10:65206101-65206398(-)$1	297	120	144	24.6642
uucuucuucuucuuuuuuugagac	chr6:158715671-158715893(+)$1	222	89	113	22.0204
ucucucccccuccucuccccuccg	chr4:151502969-151503238(-)$1	269	12	36	23.7655
guaaagauucccaguaaacuuaua	chr6:111687508-111687850(-)$1	342	13	37	22.0639
augaacuacccucuuccccucauu	chr14:103922650-103922947(+)$1	297	89	113	22.0745
gaugauuucccugauauaccaucc	chr13:53046010-53046358(+)$1	348	259	283	21.3435
AGACUCUAUAAAACAAAGUUGUCU	chr14:23541397-23541630(-)$1	233	139	163	24.3886
AUUCUAACAUUCUCUACCUUUCCU	chr1:42783252-42783528(-)$1	276	15	39	24.7075
UUUAGUAUUUAAAUGUUCUCUGAA	chrX:108909369-108909705(-)$1	336	288	312	19.4191
GAGUACCUUCAUucccucucucug	chr12:28456218-28456481(+)$1	263	29	53	23.8937

#DB
..(((..............)))..	chr22:29346878-29347138(+)$1	1	165	189	20.5855
((((....................	chr3:114484892-114485176(-)$1	1	70	94	24.7590
..((................))..	chr8:120255858-120256070(+)$1	1	142	166	23.5299
((((...................)	chr9:114399699-114399968(+)$1	1	158	182	24.4632
((((................))))	chr6:3131155-3131436(+)$1	1	113	137	24.3886
.(((....................	chr3:10304982-10305239(+)$1	1	117	141	24.7928
((((..................))	chr6:42161993-42162288(-)$1	1	230	254	24.0329
((((....................	chr2:128485303-128485574(-)$1	1	134	158	24.7075
((((((............))).))	chr11:115333443-115333733(-)$1	1	136	160	18.6898
.(((................))))	chr3:65361543-65361817(-)$1	1	6	30	24.6811
.(((..............)))...	chr5:80361928-80362202(+)$1	1	141	165	19.9285
((((...............)))))	chr17:78644786-78645083(+)$1	1	73	97	22.0486
(((................)))..	chr2:149449579-149449975(+)$1	1	220	244	22.8026
(((................)))))	chr6:150031863-150032144(-)$1	1	123	147	23.8937
((((...............)))))	chr17:27728925-27729205(+)$1	1	73	97	20.9449
((((...................)	chr9:127261858-127262117(-)$1	1	103	127	23.7849
.(((................))).	chrX:106184467-106184725(-)$1	1	26	50	24.8164
.(((...............).)).	chr17:33379467-33379685(-)$1	1	181	205	21.4892
.(((..............)))..)	chr10:64998973-64999246(-)$1	1	203	227	20.0753
(((..................)))	chr12:131469276-131469626(+)$1	1	1	25	23.9775
(((..................)))	chr7:3400915-3401221(+)$1	1	72	96	23.9775
((((...............)))))	chr14:95999649-95999853(-)$1	1	159	183	22.0486
((.(..............).))))	chr16:70190839-70191078(+)$1	1	175	199	20.6364
((((....................	chr16:81657589-81657836(+)$1	1	61	85	24.7590
((((...............)))))	chr16:78764072-78764371(+)$1	1	174	198	21.4955
((((...............))).)	chr22:25489735-25489986(+)$1	1	167	191	22.4326
((((...............)))).	chr4:88350814-88351099(+)$1	1	177	201	22.2884
((((...............)))))	chr7:34593228-34593534(-)$1	1	77	101	21.5715
.(((....................	chr14:36119614-36119896(-)$1	1	76	100	24.8313
((((....................	chr2:192198261-192198578(+)$1	1	23	47	24.7590
(((.....................	chr19:12592591-12592907(-)$1	1	237	261	24.4524
.(((...............)))..	chr17:27429429-27429723(-)$1	1	209	233	22.4475
(((................)))..	chr1:167976199-167976442(+)$1	1	67	91	22.8026
((((....................	chr9:14788673-14788950(-)$1	1	239	263	24.7590
(((..................)))	chr6:168248231-168248489(+)$1	1	148	172	23.4411
((((..................))	chrX:67482509-67482815(-)$1	1	81	105	24.0986
((((....................	chr9:14749238-14749517(-)$1	1	107	131	24.7590
((((..............))))..	chr14:37783027-37783317(+)$1	1	84	108	19.7195
((((....................	chr4:120162979-120163260(+)$1	1	52	76	24.7075
(((................)))))	chrX:48328079-48328347(-)$1	1	61	85	22.9452
((((...................)	chr15:41931234-41931578(+)$1	1	88	112	24.4632
((((...............)))))	chr11:46057151-46057498(-)$1	1	246	270	22.0486
........................	chr11:120241359-120241637(+)$1	1	143	167	24.3296
((((....................	chr2:218705647-218705976(-)$1	1	13	37	24.1397
((((................))))	chr6:16748286-16748550(-)$1	1	105	129	24.3886
(((..................)))	chr21:37076660-37076907(-)$1	1	89	113	23.9775
((.(((.............)))..	chr4:113169944-113170249(+)$1	1	201	225	18.1705
((((....................	chr2:223758426-223758664(+)$1	1	69	93	24.7590
))((...................)	chr15:91554047-91554411(-)$1	1	85	109	23.4300
((((...............)))))	chr22:24499055-24499344(+)$1	1	112	136	22.0486
((((..................))	chr1:211987038-211987315(-)$1	1	13	37	23.7506
.....................)).	chr13:45936671-45936921(+)$1	1	78	102	23.0367
((((................))))	chr12:1836013-1836386(+)$1	1	97	121	24.3886
(((((..............)))))	chr1:167977616-167977871(+)$1	1	12	36	20.1643
(((................)))..	chr10:65206101-65206398(-)$1	1	120	144	24.6642
...................)))).	chr6:158715671-158715893(+)$1	1	89	113	22.0204
......................))	chr4:151502969-151503238(-)$1	1	12	36	23.7655
((((...............)))))	chr6:111687508-111687850(-)$1	1	13	37	22.0639
((((...............)))).	chr14:103922650-103922947(+)$1	1	89	113	22.0745
((((...............)))).	chr13:53046010-53046358(+)$1	1	259	283	21.3435
((((................))))	chr14:23541397-23541630(-)$1	1	139	163	24.3886
((((....................	chr1:42783252-42783528(-)$1	1	15	39	24.7075
(((((..............)))))	chrX:108909369-108909705(-)$1	1	288	312	19.4191
(((................)))))	chr12:28456218-28456481(+)$1	1	29	53	23.8937

#PSSM
d : 0.25	e : 0.23	c : 0.12	f : 0.09	! : 0.07	^ : 0.06	[ : 0.04	i : 0.04	g : 0.03	+ : 0.01	$ : 0.01	
d : 0.25	e : 0.23	c : 0.23	f : 0.09	^ : 0.06	i : 0.04	! : 0.03	g : 0.03	b : 0.01	
c : 0.25	d : 0.25	e : 0.20	f : 0.07	^ : 0.06	b : 0.04	i : 0.04	[ : 0.03	g : 0.03	
d : 0.25	c : 0.17	e : 0.17	^ : 0.14	y : 0.09	f : 0.04	b : 0.03	a : 0.03	i : 0.03	g : 0.03	
^ : 0.43	x : 0.21	y : 0.20	w : 0.06	c : 0.04	e : 0.01	i : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	c : 0.03	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	u : 0.01	v : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	u : 0.01	v : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	u : 0.01	v : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	u : 0.01	v : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	u : 0.01	v : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	u : 0.01	v : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	u : 0.01	v : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	u : 0.01	v : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	u : 0.01	v : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	u : 0.01	v : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	u : 0.01	v : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.10	u : 0.01	v : 0.01	
^ : 0.43	x : 0.21	y : 0.20	w : 0.04	c : 0.04	a : 0.01	d : 0.01	v : 0.01	
^ : 0.42	c : 0.15	y : 0.10	e : 0.10	d : 0.09	f : 0.03	i : 0.03	a : 0.01	] : 0.01	g : 0.01	
^ : 0.42	c : 0.18	d : 0.15	e : 0.12	f : 0.03	i : 0.03	b : 0.01	] : 0.01	g : 0.01	
^ : 0.34	c : 0.18	d : 0.15	e : 0.12	b : 0.04	i : 0.04	f : 0.03	] : 0.01	> : 0.01	2 : 0.01	g : 0.01	
^ : 0.28	d : 0.15	e : 0.14	c : 0.10	2 : 0.06	i : 0.04	: : 0.03	f : 0.03	b : 0.03	g : 0.03	3 : 0.03	> : 0.01	] : 0.01	7 : 0.01	
^ : 0.21	e : 0.20	c : 0.09	d : 0.07	2 : 0.06	f : 0.06	: : 0.04	] : 0.04	i : 0.04	3 : 0.04	> : 0.03	g : 0.03	7 : 0.01	b : 0.01	

#score	1472.7639258622212
#seq	64
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_UTR_m2_run2.txt

#BEAR
!!ccc[ccc####ddddoooooodddd55555ccc]ccc2	chr11:93464161-93464366(-)$1	205	108	148	17.4475
==========[ddddoooooodddd]=============:	chr16:89980263-89980510(+)$1	247	158	198	14.0104
$iiiiiiiii!!cccmmmmccciiiiiiiii4444ggggg	chr11:8705720-8705925(+)$1	205	133	173	19.4663
$iiiiiiiii!!cccmmmmccciiiiiiiii4444ggggg	chr11:8705740-8705945(+)$1	205	113	153	19.4663
f"""gggggggddddmmmmdddd22ggggggg]ffffff]	chr15:83424595-83424832(+)$1	237	113	153	12.6022
ffffffccc[a[cccmmmmccc]a]ccc]ffffff]eeee	chr2:135208345-135208572(+)$1	227	96	136	13.3867
!!ccc[ccc####ddddoooooodddd55555ccc]ccc2	chr11:93464134-93464354(-)$1	220	96	136	17.4475
!!ccc[ccc####ddddoooooodddd55555ccc]ccc2	chr11:93464102-93464307(-)$1	205	49	89	17.4475
a!!ggggggg!!ccclllccc22ggggggg4444a]bb]f	chr11:93466528-93466737(-)$1	209	138	178	16.9054
gggga[bbccc[cccmmmmcccccc]bb]a4444gggggg	chr16:2012238-2012458(-)$1	220	89	129	18.0395
$iiiiiiiii!!cccmmmmccciiiiiiiii4444ggggg	chr11:8705725-8705928(+)$1	203	128	168	19.4663
%%%cccccc[cccoooooocccccc]ccc666666ccc22	chr17:7481212-7481416(+)$1	204	108	148	14.3672
f"""gggggggddddmmmmdddd22ggggggg]ffffff]	chr15:83424668-83424918(+)$1	250	40	80	12.6022
gggga[bbccc[cccmmmmcccccc]bb]a4444gggggg	chr16:2012277-2012493(-)$1	216	124	164	18.0395
!!ccc[ccc####ddddoooooodddd55555ccc]ccc2	chr11:93464123-93464327(-)$1	204	69	109	17.4475
f"""gggggggddddmmmmdddd22ggggggg]ffffff]	chr15:83424632-83424859(+)$1	227	76	116	12.6022
!!ccc[ccc####ddddoooooodddd55555ccc]ccc2	chr11:93464107-93464311(-)$1	204	53	93	17.4475
=========="""ccclllccc]==========ddddlll	chr22:20113892-20114101(+)$1	209	151	191	14.5995
[a####eeeee!!bbmmmmbb]eeeee666666a]ccc33	chr13:26828245-26828454(+)$1	209	104	144	15.2958
####ffffff!!cccmmmmccc]ffffff55555ddddbb	chr5:85916221-85916488(+)$1	267	117	157	14.1732
ggggggccc[a[cccmmmmccc]a]ccc]ggggggggggg	chr2:135208241-135208518(+)$1	277	200	240	15.4972
!!ccc[ccc####ddddoooooodddd55555ccc]ccc2	chr11:93464087-93464296(-)$1	209	38	78	17.4475
a!!ggggggg!!ccclllccc22ggggggg4444a]bb]f	chr11:93466546-93466765(-)$1	219	166	206	16.9054
!!ccc[ccc####ddddoooooodddd55555ccc]ccc2	chr11:93464113-93464323(-)$1	210	65	105	17.4475
gggga[bbccc[cccmmmmcccccc]bb]a4444gggggg	chr16:2012232-2012438(-)$1	206	69	109	18.0395
ffffffccc[a[cccmmmmccc]a]ccc]ffffff]eeee	chr2:135208318-135208545(+)$1	227	123	163	13.3867
%%%cccccc[cccoooooocccccc]ccc666666ccc22	chr17:7481172-7481412(+)$1	240	148	188	14.3672
$iiiiiiiii!!cccmmmmccciiiiiiiii4444ggggg	chr11:8705738-8705940(+)$1	202	115	155	19.4663
[a####eeeee!!bbmmmmbb]eeeee666666a]ccc33	chr13:26828204-26828445(+)$1	241	145	185	15.2958
$iiiiiiiii!!cccmmmmccciiiiiiiii4444ggggg	chr11:8705728-8705932(+)$1	204	125	165	19.4663
c"""ddddggggggglllggggggg]dddd333ccc333f	chr3:12881750-12881964(-)$1	214	29	69	12.6296
!!ccc[ccc####ddddoooooodddd55555ccc]ccc2	chr11:93464064-93464273(-)$1	209	15	55	17.4475
$iiiiiiiii!!cccmmmmccciiiiiiiii4444ggggg	chr11:8705697-8705914(+)$1	217	156	196	19.4663
!!ccc[ccc####ddddoooooodddd55555ccc]ccc2	chr11:93464127-93464334(-)$1	207	76	116	17.4475
ffff[==========mmmm==========]ffffff]fff	chr16:89980652-89980917(+)$1	265	222	262	13.1311
a!!ggggggg!!ccclllccc22ggggggg4444a]bb]f	chr11:93466537-93466746(-)$1	209	147	187	16.9054
gggga[bbccc[cccmmmmcccccc]bb]a4444gggggg	chr16:2012298-2012520(-)$1	222	151	191	18.0395
gggga[bbccc[cccmmmmcccccc]bb]a4444gggggg	chr16:2012293-2012498(-)$1	205	129	169	18.0395
=========="""ccclllccc]==========ddddlll	chr22:20113901-20114129(+)$1	228	142	182	14.5995
$iiiiiiiii!!cccmmmmccciiiiiiiii4444ggggg	chr11:8705714-8705920(+)$1	206	139	179	19.4663
!!ccc[ccc####ddddoooooodddd55555ccc]ccc2	chr11:93464058-93464264(-)$1	206	6	46	17.4475
$iiiiiiiii!!cccmmmmccciiiiiiiii4444ggggg	chr11:8705747-8705953(+)$1	206	106	146	19.4663
[a####eeeee!!bbmmmmbb]eeeee666666a]ccc33	chr13:26828254-26828467(+)$1	213	95	135	15.2958
!!ccc[ccc####ddddoooooodddd55555ccc]ccc2	chr11:93464097-93464302(-)$1	205	44	84	17.4475
c"""ddddggggggglllggggggg]dddd333ccc333f	chr3:12881806-12882009(-)$1	203	74	114	12.6296
gggga[bbccc[cccmmmmcccccc]bb]a4444gggggg	chr16:2012258-2012469(-)$1	211	100	140	18.0395
eeiiiiiiiiiddddmmmmdddd22iiiiiiiii333eee	chr15:25227104-25227332(+)$1	228	138	178	12.6030
g!!ffffff"""cccmmmmccc4444ffffff4444gggg	chr17:36882508-36882830(+)$1	322	152	192	15.7241
$iiiiiiiii!!cccmmmmccciiiiiiiii4444ggggg	chr11:8705732-8705937(+)$1	205	121	161	19.4663
!!ccc[ccc####ddddoooooodddd55555ccc]ccc2	chr11:93464154-93464361(-)$1	207	103	143	17.4475

#otherMatches

#Seq PSSM
UACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGA	chr11:93464161-93464366(-)$1	205	108	148	17.4475
ugcgcauacguguguggguaaacauuuguaugugcacgcg	chr16:89980263-89980510(+)$1	247	158	198	14.0104
CACUGGCUGUGGGCCUUAUGGCACAGUCAGUCACCAGGUU	chr11:8705720-8705925(+)$1	205	133	173	19.4663
CACUGGCUGUGGGCCUUAUGGCACAGUCAGUCACCAGGUU	chr11:8705740-8705945(+)$1	205	113	153	19.4663
AAAAUAGAGUCCUUGAAAUCAAGCUGACUCUGCUUUUAGC	chr15:83424595-83424832(+)$1	237	113	153	12.6022
GCAGUAGGAGGGCAGAUGACUGGCAUCCUUGCUGUAAGGA	chr2:135208345-135208572(+)$1	227	96	136	13.3867
UACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGA	chr11:93464134-93464354(-)$1	220	96	136	17.4475
UACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGA	chr11:93464102-93464307(-)$1	205	49	89	17.4475
UUAUGAAAAACCAGAUAAUCUACUUUUUUACCUUAGGUAU	chr11:93466528-93466737(-)$1	209	138	178	16.9054
AGAAUGGCCUCUCUGUUCCUAGGAGUGCGACAAUUUUUGG	chr16:2012238-2012458(-)$1	220	89	129	18.0395
CACUGGCUGUGGGCCUUAUGGCACAGUCAGUCACCAGGUU	chr11:8705725-8705928(+)$1	203	128	168	19.4663
GUAGCAGCUUGGAAUAGAAUCUGGCAUGCCUAAGGCCUUU	chr17:7481212-7481416(+)$1	204	108	148	14.3672
AAAAUAGAGUCCUUGAAAUCAAGCUGACUCUGCUUUUAGC	chr15:83424668-83424918(+)$1	250	40	80	12.6022
AGAAUGGCCUCUCUGUUCCUAGGAGUGCGACAAUUUUUGG	chr16:2012277-2012493(-)$1	216	124	164	18.0395
UACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGA	chr11:93464123-93464327(-)$1	204	69	109	17.4475
AAAAUAGAGUCCUUGAAAUCAAGCUGACUCUGCUUUUAGC	chr15:83424632-83424859(+)$1	227	76	116	12.6022
UACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGA	chr11:93464107-93464311(-)$1	204	53	93	17.4475
ACAGGUGCUUCCUGGGGAGCCCUGAGCACUUGUCAGUGUU	chr22:20113892-20114101(+)$1	209	151	191	14.5995
GUGAGAGCGUGAGGCGUGAGUGCGCGUGUGAGAGGACGAG	chr13:26828245-26828454(+)$1	209	104	144	15.2958
AAAUCAGUAUGAAUGAAUUCAUGAUACUGUAAACGCUUUC	chr5:85916221-85916488(+)$1	267	117	157	14.1732
GCAGUAGGAGGGCAGAUGACUGGCAUCCUUGCUGUAAGGA	chr2:135208241-135208518(+)$1	277	200	240	15.4972
UACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGA	chr11:93464087-93464296(-)$1	209	38	78	17.4475
UUAUGAAAAACCAGAUAAUCUACUUUUUUACCUUAGGUAU	chr11:93466546-93466765(-)$1	219	166	206	16.9054
UACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGA	chr11:93464113-93464323(-)$1	210	65	105	17.4475
AGAAUGGCCUCUCUGUUCCUAGGAGUGCGACAAUUUUUGG	chr16:2012232-2012438(-)$1	206	69	109	18.0395
GCAGUAGGAGGGCAGAUGACUGGCAUCCUUGCUGUAAGGA	chr2:135208318-135208545(+)$1	227	123	163	13.3867
GUAGCAGCUUGGAAUAGAAUCUGGCAUGCCUAAGGCCUUU	chr17:7481172-7481412(+)$1	240	148	188	14.3672
CACUGGCUGUGGGCCUUAUGGCACAGUCAGUCACCAGGUU	chr11:8705738-8705940(+)$1	202	115	155	19.4663
GUGAGAGCGUGAGGCGUGAGUGCGCGUGUGAGAGGACGAG	chr13:26828204-26828445(+)$1	241	145	185	15.2958
CACUGGCUGUGGGCCUUAUGGCACAGUCAGUCACCAGGUU	chr11:8705728-8705932(+)$1	204	125	165	19.4663
GCAUCUGGAGAGUGCCUAGUAUUCUGCCAGCUUCGGAAAG	chr3:12881750-12881964(-)$1	214	29	69	12.6296
UACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGA	chr11:93464064-93464273(-)$1	209	15	55	17.4475
CACUGGCUGUGGGCCUUAUGGCACAGUCAGUCACCAGGUU	chr11:8705697-8705914(+)$1	217	156	196	19.4663
UACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGA	chr11:93464127-93464334(-)$1	207	76	116	17.4475
ugugGGGGUGCACAUUugugugugcgccuguguguggggg	chr16:89980652-89980917(+)$1	265	222	262	13.1311
UUAUGAAAAACCAGAUAAUCUACUUUUUUACCUUAGGUAU	chr11:93466537-93466746(-)$1	209	147	187	16.9054
AGAAUGGCCUCUCUGUUCCUAGGAGUGCGACAAUUUUUGG	chr16:2012298-2012520(-)$1	222	151	191	18.0395
AGAAUGGCCUCUCUGUUCCUAGGAGUGCGACAAUUUUUGG	chr16:2012293-2012498(-)$1	205	129	169	18.0395
ACAGGUGCUUCCUGGGGAGCCCUGAGCACUUGUCAGUGUU	chr22:20113901-20114129(+)$1	228	142	182	14.5995
CACUGGCUGUGGGCCUUAUGGCACAGUCAGUCACCAGGUU	chr11:8705714-8705920(+)$1	206	139	179	19.4663
UACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGA	chr11:93464058-93464264(-)$1	206	6	46	17.4475
CACUGGCUGUGGGCCUUAUGGCACAGUCAGUCACCAGGUU	chr11:8705747-8705953(+)$1	206	106	146	19.4663
GUGAGAGCGUGAGGCGUGAGUGCGCGUGUGAGAGGACGAG	chr13:26828254-26828467(+)$1	213	95	135	15.2958
UACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGA	chr11:93464097-93464302(-)$1	205	44	84	17.4475
GCAUCUGGAGAGUGCCUAGUAUUCUGCCAGCUUCGGAAAG	chr3:12881806-12882009(-)$1	203	74	114	12.6296
AGAAUGGCCUCUCUGUUCCUAGGAGUGCGACAAUUUUUGG	chr16:2012258-2012469(-)$1	211	100	140	18.0395
GAUUUCAAGAUUUUCUGCAGAAAAUGUUUUGAAAACUUUG	chr15:25227104-25227332(+)$1	228	138	178	12.6030
UGCCUGUCUCUCUCCUCCUGGACCCAGGGCAGCCAAGGGC	chr17:36882508-36882830(+)$1	322	152	192	15.7241
CACUGGCUGUGGGCCUUAUGGCACAGUCAGUCACCAGGUU	chr11:8705732-8705937(+)$1	205	121	161	19.4663
UACCAAGGCUUUUAGAAUGCAGUUUCUCAUUUGCUGUGGA	chr11:93464154-93464361(-)$1	207	103	143	17.4475

#DB
..(((.(((....((((......)))).....))).))).	chr11:93464161-93464366(-)$1	1	108	148	17.4475
((((((((((.((((......)))).))))))))))))).	chr16:89980263-89980510(+)$1	1	158	198	14.0104
.(((((((((..(((....))))))))))))....)))))	chr11:8705720-8705925(+)$1	1	133	173	19.4663
.(((((((((..(((....))))))))))))....)))))	chr11:8705740-8705945(+)$1	1	113	153	19.4663
(...(((((((((((....))))..))))))).)))))).	chr15:83424595-83424832(+)$1	1	113	153	12.6022
(((((((((.(.(((....))).).))).)))))).))))	chr2:135208345-135208572(+)$1	1	96	136	13.3867
..(((.(((....((((......)))).....))).))).	chr11:93464134-93464354(-)$1	1	96	136	17.4475
..(((.(((....((((......)))).....))).))).	chr11:93464102-93464307(-)$1	1	49	89	17.4475
(..(((((((..(((...)))..)))))))....).)).)	chr11:93466528-93466737(-)$1	1	138	178	16.9054
(((((.(((((.(((....)))))).)).)....))))))	chr16:2012238-2012458(-)$1	1	89	129	18.0395
.(((((((((..(((....))))))))))))....)))))	chr11:8705725-8705928(+)$1	1	128	168	19.4663
...((((((.(((......)))))).)))......)))..	chr17:7481212-7481416(+)$1	1	108	148	14.3672
(...(((((((((((....))))..))))))).)))))).	chr15:83424668-83424918(+)$1	1	40	80	12.6022
(((((.(((((.(((....)))))).)).)....))))))	chr16:2012277-2012493(-)$1	1	124	164	18.0395
..(((.(((....((((......)))).....))).))).	chr11:93464123-93464327(-)$1	1	69	109	17.4475
(...(((((((((((....))))..))))))).)))))).	chr15:83424632-83424859(+)$1	1	76	116	12.6022
..(((.(((....((((......)))).....))).))).	chr11:93464107-93464311(-)$1	1	53	93	17.4475
((((((((((...(((...))).))))))))))((((...	chr22:20113892-20114101(+)$1	1	151	191	14.5995
.(....(((((..((....)).)))))......).)))..	chr13:26828245-26828454(+)$1	1	104	144	15.2958
....((((((..(((....))).)))))).....))))))	chr5:85916221-85916488(+)$1	1	117	157	14.1732
(((((((((.(.(((....))).).))).)))))))((((	chr2:135208241-135208518(+)$1	1	200	240	15.4972
..(((.(((....((((......)))).....))).))).	chr11:93464087-93464296(-)$1	1	38	78	17.4475
(..(((((((..(((...)))..)))))))....).)).)	chr11:93466546-93466765(-)$1	1	166	206	16.9054
..(((.(((....((((......)))).....))).))).	chr11:93464113-93464323(-)$1	1	65	105	17.4475
(((((.(((((.(((....)))))).)).)....))))))	chr16:2012232-2012438(-)$1	1	69	109	18.0395
(((((((((.(.(((....))).).))).)))))).))))	chr2:135208318-135208545(+)$1	1	123	163	13.3867
...((((((.(((......)))))).)))......)))..	chr17:7481172-7481412(+)$1	1	148	188	14.3672
.(((((((((..(((....))))))))))))....)))))	chr11:8705738-8705940(+)$1	1	115	155	19.4663
.(....(((((..((....)).)))))......).)))..	chr13:26828204-26828445(+)$1	1	145	185	15.2958
.(((((((((..(((....))))))))))))....)))))	chr11:8705728-8705932(+)$1	1	125	165	19.4663
(...(((((((((((...))))))).))))...)))...)	chr3:12881750-12881964(-)$1	1	29	69	12.6296
..(((.(((....((((......)))).....))).))).	chr11:93464064-93464273(-)$1	1	15	55	17.4475
.(((((((((..(((....))))))))))))....)))))	chr11:8705697-8705914(+)$1	1	156	196	19.4663
..(((.(((....((((......)))).....))).))).	chr11:93464127-93464334(-)$1	1	76	116	17.4475
((((.((((((((((....)))))))))).)))))).)))	chr16:89980652-89980917(+)$1	1	222	262	13.1311
(..(((((((..(((...)))..)))))))....).)).)	chr11:93466537-93466746(-)$1	1	147	187	16.9054
(((((.(((((.(((....)))))).)).)....))))))	chr16:2012298-2012520(-)$1	1	151	191	18.0395
(((((.(((((.(((....)))))).)).)....))))))	chr16:2012293-2012498(-)$1	1	129	169	18.0395
((((((((((...(((...))).))))))))))((((...	chr22:20113901-20114129(+)$1	1	142	182	14.5995
.(((((((((..(((....))))))))))))....)))))	chr11:8705714-8705920(+)$1	1	139	179	19.4663
..(((.(((....((((......)))).....))).))).	chr11:93464058-93464264(-)$1	1	6	46	17.4475
.(((((((((..(((....))))))))))))....)))))	chr11:8705747-8705953(+)$1	1	106	146	19.4663
.(....(((((..((....)).)))))......).)))..	chr13:26828254-26828467(+)$1	1	95	135	15.2958
..(((.(((....((((......)))).....))).))).	chr11:93464097-93464302(-)$1	1	44	84	17.4475
(...(((((((((((...))))))).))))...)))...)	chr3:12881806-12882009(-)$1	1	74	114	12.6296
(((((.(((((.(((....)))))).)).)....))))))	chr16:2012258-2012469(-)$1	1	100	140	18.0395
(((((((((((((((....))))..)))))))))...)))	chr15:25227104-25227332(+)$1	1	138	178	12.6030
(..((((((...(((....)))....))))))....))))	chr17:36882508-36882830(+)$1	1	152	192	15.7241
.(((((((((..(((....))))))))))))....)))))	chr11:8705732-8705937(+)$1	1	121	161	19.4663
..(((.(((....((((......)))).....))).))).	chr11:93464154-93464361(-)$1	1	103	143	17.4475

#PSSM
! : 0.23	$ : 0.18	g : 0.16	f : 0.12	= : 0.06	a : 0.06	[ : 0.06	% : 0.04	c : 0.04	# : 0.02	e : 0.02	
! : 0.32	i : 0.18	g : 0.14	" : 0.10	= : 0.06	f : 0.06	a : 0.06	% : 0.04	# : 0.02	e : 0.02	
c : 0.23	i : 0.19	g : 0.14	" : 0.10	! : 0.08	# : 0.08	= : 0.06	f : 0.06	% : 0.04	
c : 0.27	i : 0.19	g : 0.19	" : 0.10	f : 0.08	# : 0.08	= : 0.06	
c : 0.27	i : 0.19	g : 0.14	a : 0.12	f : 0.08	= : 0.06	# : 0.06	d : 0.04	[ : 0.02	
[ : 0.36	i : 0.19	g : 0.14	= : 0.08	f : 0.08	# : 0.06	c : 0.04	d : 0.04	
c : 0.34	i : 0.19	g : 0.12	b : 0.12	= : 0.08	e : 0.06	f : 0.04	d : 0.04	
c : 0.34	i : 0.19	g : 0.12	b : 0.12	= : 0.08	e : 0.06	f : 0.04	d : 0.04	
c : 0.46	i : 0.19	g : 0.16	= : 0.08	e : 0.06	f : 0.04	
# : 0.23	i : 0.19	g : 0.16	c : 0.12	[ : 0.10	= : 0.08	e : 0.06	f : 0.02	" : 0.02	
! : 0.25	# : 0.23	c : 0.16	g : 0.10	a : 0.06	" : 0.06	e : 0.06	[ : 0.02	= : 0.02	i : 0.02	
! : 0.32	# : 0.23	[ : 0.18	d : 0.10	" : 0.06	c : 0.04	g : 0.04	= : 0.02	
c : 0.50	# : 0.23	d : 0.10	! : 0.06	" : 0.04	g : 0.04	= : 0.02	
c : 0.50	d : 0.34	b : 0.06	o : 0.04	g : 0.04	= : 0.02	
c : 0.50	d : 0.34	b : 0.06	o : 0.04	g : 0.04	= : 0.02	
m : 0.56	d : 0.23	l : 0.10	o : 0.06	c : 0.04	
m : 0.56	d : 0.23	l : 0.14	o : 0.06	
m : 0.56	o : 0.30	l : 0.14	
m : 0.56	o : 0.30	c : 0.06	l : 0.04	g : 0.04	
c : 0.54	o : 0.25	d : 0.08	b : 0.06	g : 0.04	= : 0.02	
c : 0.54	o : 0.25	d : 0.08	b : 0.06	g : 0.04	= : 0.02	
c : 0.48	o : 0.23	d : 0.10	2 : 0.06	] : 0.06	g : 0.04	= : 0.02	
o : 0.23	i : 0.18	c : 0.16	] : 0.12	d : 0.10	2 : 0.06	e : 0.06	g : 0.04	= : 0.02	4 : 0.02	
d : 0.25	i : 0.18	c : 0.16	g : 0.10	2 : 0.08	a : 0.06	= : 0.06	e : 0.06	f : 0.02	4 : 0.02	
d : 0.25	i : 0.18	c : 0.16	g : 0.10	2 : 0.08	] : 0.06	= : 0.06	e : 0.06	f : 0.02	4 : 0.02	
d : 0.23	] : 0.21	i : 0.19	g : 0.12	c : 0.06	= : 0.06	e : 0.06	f : 0.02	4 : 0.02	
d : 0.27	i : 0.19	g : 0.12	b : 0.12	c : 0.10	= : 0.08	e : 0.06	f : 0.04	
5 : 0.23	i : 0.19	g : 0.12	b : 0.12	c : 0.10	= : 0.08	6 : 0.06	f : 0.04	d : 0.04	
5 : 0.23	i : 0.19	] : 0.18	g : 0.12	= : 0.08	6 : 0.06	c : 0.04	f : 0.04	d : 0.04	
5 : 0.25	i : 0.19	g : 0.14	a : 0.12	6 : 0.10	= : 0.06	f : 0.06	d : 0.04	] : 0.02	
5 : 0.25	i : 0.19	4 : 0.18	6 : 0.10	g : 0.08	f : 0.08	= : 0.06	3 : 0.04	
4 : 0.36	5 : 0.25	6 : 0.10	g : 0.08	f : 0.08	= : 0.06	3 : 0.04	i : 0.02	
4 : 0.38	c : 0.23	6 : 0.10	= : 0.06	] : 0.06	f : 0.06	3 : 0.04	5 : 0.02	g : 0.02	i : 0.02	
4 : 0.38	c : 0.27	f : 0.12	a : 0.06	6 : 0.04	d : 0.04	= : 0.02	5 : 0.02	g : 0.02	i : 0.02	
c : 0.27	4 : 0.19	g : 0.14	f : 0.12	a : 0.06	d : 0.06	] : 0.06	6 : 0.04	= : 0.02	3 : 0.02	
] : 0.34	g : 0.32	c : 0.14	f : 0.08	d : 0.06	= : 0.02	3 : 0.02	4 : 0.02	
c : 0.34	g : 0.34	f : 0.06	b : 0.06	d : 0.06	3 : 0.06	e : 0.04	= : 0.02	] : 0.02	
c : 0.34	g : 0.34	f : 0.08	e : 0.06	b : 0.06	l : 0.04	3 : 0.04	= : 0.02	d : 0.02	
g : 0.34	c : 0.23	3 : 0.10	f : 0.08	e : 0.06	] : 0.06	2 : 0.04	l : 0.04	= : 0.02	b : 0.02	
g : 0.34	2 : 0.27	f : 0.12	] : 0.06	e : 0.06	3 : 0.06	l : 0.04	: : 0.02	b : 0.02	

#score	822.3207653332748
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_transcript_m3_run2.txt

#BEAR
[ggggggg"""cccooooooccc22ggggggg3	chr19:38798153-38798395(-)$1	242	58	91	15.6391
e[a"""a!!cccbboooooobb]ccc22a22a]	chr19:4035104-4035326(+)$1	222	105	138	14.8934
ffffff"""bbcccooooooccc]bb333ffff	chrX:153596352-153596558(-)$1	206	78	111	14.4411
ccc[cccgggggggooooooggggggg333ccc	chr1:162549136-162549369(+)$1	233	1	34	15.6419
:ccc!!==========lll==========]ccc	chr7:128612465-128612688(-)$1	223	158	191	11.8275
======"""ffffffnnnnnffffff333====	chr2:73470154-73470359(+)$1	205	149	182	11.9441
"""eeeee"""ccclllccc4444eeeee]ccc	chr7:91752447-91752661(-)$1	214	100	133	9.5928
ccc[addddddddoooooodddd22dddd4444	chr11:62294982-62295195(-)$1	213	62	95	11.1971
iiiiiiii[addddoooooodddd]a]iiiiii	chr7:42971615-42971827(-)$1	212	47	80	13.9239
cdddd!!gggggggooooooggggggg]dddd7	chrX:30885154-30885436(-)$1	282	36	69	13.3940
eeeee####ccc[cccmmmmcccccc4444eee	chr7:99633735-99633960(+)$1	225	179	212	10.6462
eeeee[ccc[ddddooooooddddccc]eeeee	chr6:33268826-33269054(-)$1	228	14	47	13.2020
ccc[ffffffcccooooooccc]ffffff]ccc	chr12:125627234-125627503(+)$1	269	34	67	13.0826
ddd!!dddd[ddddoooooodddddddd333dd	chr10:51580562-51580771(+)$1	209	71	104	13.2202
ccc!!ccc!!dddd[annnnna]dddd22ccc2	chr1:145440420-145440625(+)$1	205	150	183	10.5535
g!!bb!!ddddcccooooooccc333dddd444	chr10:27405074-27405310(-)$1	236	111	144	13.9505
ccc[ccc$$$$$bboooooobb333ccc]ccce	chr9:19376211-19376430(-)$1	219	13	46	14.7606
[a!!ccc!!ffffffnnnnnffffff]ccc]a]	chr12:53776421-53776717(+)$1	296	53	86	10.8357
[bb[ffffff[cccooooooccc]ffffffbb]	chr22:41923889-41924111(+)$1	222	167	200	13.5429
eee"""ccc"""bboooooobb333ccceeeee	chr1:883772-883990(-)$1	218	105	138	14.8082
e####gggggggcccnnnnnccc]gggggggee	chr15:50474383-50474635(+)$1	252	197	230	11.8800
###dddd[aeeeeeooooooeeeee]a]dddd3	chr1:160275447-160275663(-)$1	216	110	143	12.2638
fffff[ffffffbboooooobb]ffffffffff	chr13:114563889-114564170(-)$1	281	235	268	12.3719
ddd[dddd"""eeeeeooooooeeeee22dddd	chrX:152034322-152034544(+)$1	222	169	202	10.8244
ddddccc!!ccccccnnnnnccc22ccc22ccc	chr17:49237248-49237494(+)$1	246	102	135	11.9205
dd==========[bboooooobb]=========	chr5:149825122-149825325(-)$1	203	169	202	13.9083
:ccc!!ccc[ddddoooooodddd22ccc]ccc	chr19:49119260-49119492(-)$1	232	187	220	13.2988
ddd[ffffff!!bboooooobb]ffffffdddd	chr7:92241762-92242022(-)$1	260	19	52	13.2930
gggggg"""bb[bboooooobbbb333gggggg	chr7:99711390-99711617(-)$1	227	91	124	13.9931
cccffffff"""ddddoooooodddd333ffff	chr3:47447418-47447636(+)$1	218	165	198	11.3705
d[ccc####ccc[bboooooobb]ccc333ccc	chr19:55918082-55918285(-)$1	203	113	146	14.7260
gggggga"""ccc[cccmmmmcccccc333a]g	chr19:18684066-18684273(+)$1	207	67	100	10.5117
eeee!!ccc!!cccooooooccc]ccc22eeee	chr6:26158320-26158552(+)$1	232	170	203	15.4236
!!ccc"""bb[cccoooooocccbbccc22bb]	chr3:53322167-53322402(-)$1	235	25	58	14.3855
hhh!!ffffffcccooooooccc333ffffffh	chr9:139757291-139757518(-)$1	227	154	187	13.9735
ee!!bb!!ffffffooooooffffff]bb]eee	chr1:155984650-155984862(-)$1	212	78	111	12.9482
cc####dddd!!cccnnnnncccddddcccccc	chr3:183896564-183896775(+)$1	211	97	130	10.9316
ccc[bb"""ggggggglllggggggg333bb]c	chr6:2840598-2840815(-)$1	217	112	145	10.9489
ggggggccc[ddddnnnnndddd]ccc]ggggg	chr19:13051532-13051747(+)$1	215	4	37	10.5154
dd[ffffff"""bboooooobb]ffffff]ddd	chr4:667600-667815(-)$1	215	86	119	13.5179
ffff[bb!!eeeeeooooooeeeee22bbffff	chr16:28857307-28857523(-)$1	216	36	69	11.5400
""ccc!!a"""cccooooooccca22ccc]fff	chr3:23848793-23849012(+)$1	219	69	102	15.6056
gg####eeeee[bboooooobb]eeeee4444g	chr16:23680709-23681004(+)$1	295	63	96	13.5950
dddd[ggggggg[aooooooa]gggggggdddd	chr1:15988931-15989204(+)$1	273	66	99	13.7874
ea!!==========oooooo==========22a	chr2:178199020-178199332(-)$1	312	169	202	15.2183
!!dddd[bbeeeeeooooooeeeee]bb]dddd	chr17:27074855-27075060(+)$1	205	44	77	11.5900
[ccc[a[gggggggoooooogggggggaccc22	chr16:66966588-66966815(-)$1	227	147	180	14.2718
ddd[a[bb"""cccooooooccc]bb]a]dddd	chr2:217365975-217366186(+)$1	211	94	127	14.9846
ddd$$$$$ccccccooooooccc]ccc4444dd	chr3:48726959-48727244(-)$1	285	178	211	15.1217

#otherMatches

#Seq PSSM
CUGGAGGUGCUGGCCAUCCUGCUCAGCCUCUAU	chr19:38798153-38798395(-)$1	242	58	91	15.6391
GGACGAGGGCUCUCCUGUGUGAUGAGAACGAUG	chr19:4035104-4035326(+)$1	222	105	138	14.8934
GUGGCCACUCUUCUACUCACAGACAGCAAGGCC	chrX:153596352-153596558(-)$1	206	78	111	14.4411
GCUUAGGAAAUAGACGAAACUUUAUUUUGCCCU	chr1:162549136-162549369(+)$1	233	1	34	15.6419
AGUGUCAUGAGGUUUCUACGAGACCUCAUUCAU	chr7:128612465-128612688(-)$1	223	158	191	11.8275
AUUUCUCUUAGGAAGGGGAAUUUCUUUUCAGGA	chr2:73470154-73470359(+)$1	205	149	182	11.9441
AUACAUCCUCAACUACUAGUGCUUGGAUGGGCU	chr7:91752447-91752661(-)$1	214	100	133	9.5928
CAUGCCUGGCUUCAAAGGAGAGGGCCCAGAAGU	chr11:62294982-62295195(-)$1	213	62	95	11.1971
GUGCUUUGGCUCUUCGGGUAAAGAUGGCGGAGC	chr7:42971615-42971827(-)$1	212	47	80	13.9239
auuaacugaagucuauauucagauuuccuuaac	chrX:30885154-30885436(-)$1	282	36	69	13.3940
CUCCAGAAGAGUAUAUCUAAGUAACUAAAAUGG	chr7:99633735-99633960(+)$1	225	179	212	10.6462
UCUUAUGGCAUUCACCUUCUUGGAGCUCUAGGA	chr6:33268826-33269054(-)$1	228	14	47	13.2020
ACAGCUGGCUGCUAGGACCGGCGGGCUGGGUGU	chr12:125627234-125627503(+)$1	269	34	67	13.0826
GUGGACCUUAUUUAUCAGCUUAAAGAGGAGACA	chr10:51580562-51580771(+)$1	209	71	104	13.2202
UACCACAGCUGUCUUGUUUCUCCAGACCUCUGG	chr1:145440420-145440625(+)$1	205	150	183	10.5535
GGAGGAAGAGUGGCAGAGGAGCUUAUAUUUGGA	chr10:27405074-27405310(-)$1	236	111	144	13.9505
CCUUAACUGUUUGCUGUUUUGUUUUGUUUAGGA	chr9:19376211-19376430(-)$1	219	13	46	14.7606
ACAGACUCAGUAUGUGACCAAUGUACCAGUGGC	chr12:53776421-53776717(+)$1	296	53	86	10.8357
GGGUGAGGGGCAGCCACCUUGUUUCCCCUCCUG	chr22:41923889-41924111(+)$1	222	167	200	13.5429
GGAGAAGGCGUACCGGGUGAGGCUGGCCUCCUG	chr1:883772-883990(-)$1	218	105	138	14.8082
GUGAACCCUCUGCCCUCGCUGGGACAGAGGGCC	chr15:50474383-50474635(+)$1	252	197	230	11.8800
UCUGUGAAGAUUUCUAAAGUGAAAUACGUUAUC	chr1:160275447-160275663(-)$1	216	110	143	12.2638
AAGCGUGUCCCACUGCCCCAAGCUGGGGCUGCU	chr13:114563889-114564170(-)$1	281	235	268	12.3719
AAGUUCGUGAUUGGGUGAGUCAGCCCACAGCGG	chrX:152034322-152034544(+)$1	222	169	202	10.8244
AUCUUCUCAAGGAACACUACGUUGACCUGAAGG	chr17:49237248-49237494(+)$1	246	102	135	11.9205
UAGCUAAUGCUUGGGUUUAUUUUGAAGCAUUGG	chr5:149825122-149825325(-)$1	203	169	202	13.9083
UGAGCUGUGUGGCUACUGGCAGCCUUCACCCUC	chr19:49119260-49119492(-)$1	232	187	220	13.2988
GCAUCUGCUUUUGACUCAUUUCUAGGCAGUGCU	chr7:92241762-92242022(-)$1	260	19	52	13.2930
GACAUUGACUACGCCUUGAAGCUAAAGAAUGUC	chr7:99711390-99711617(-)$1	227	91	124	13.9931
UGGCCAGGGAGGGGGCAGUUGGGCCUGGAUCCU	chr3:47447418-47447636(+)$1	218	165	198	11.3705
AAGGAAAAAGAGAAGGGGCUGCUGCUUAGAUCC	chr19:55918082-55918285(-)$1	203	113	146	14.7260
CACUGGCAAAACCAUCACCCUUGAGGUCGAGCC	chr19:18684066-18684273(+)$1	207	67	100	10.5117
CGCAGCCGCAAGGAGAGCUAUUCAGUGUAUGUG	chr6:26158320-26158552(+)$1	232	170	203	15.4236
UUCCACAUGGUCCCUAUUCUGGGCCUGGCUACU	chr3:53322167-53322402(-)$1	235	25	58	14.3855
GCCAUUGGUGAGUGUCCCUCCACCCUUCGCCGG	chr9:139757291-139757518(-)$1	227	154	187	13.9735
ACUUACCUGGCCCAGGAGGAUGGGCCCGUUGUG	chr1:155984650-155984862(-)$1	212	78	111	12.9482
CCUUUCGGGUCAAUGUUAUCCAUGCCCGGCAGC	chr3:183896564-183896775(+)$1	211	97	130	10.9316
GCCAUGGUUUUUCUGGGGACCAGAGGUAACACG	chr6:2840598-2840815(-)$1	217	112	145	10.9489
GUUUCCUUCUCCCUUCUGCAGGGUGAGUGGAAG	chr19:13051532-13051747(+)$1	215	4	37	10.5154
CGGUGUGGCCUACGGAGCCACGCGCUACAGUGA	chr4:667600-667815(-)$1	215	86	119	13.5179
UAGGUGGCUGGGUUCGGUCUGACCCCUUCCCUG	chr16:28857307-28857523(-)$1	216	36	69	11.5400
AAAGUCAGCAUGAGCAAAAACUCCAAACUCCUC	chr3:23848793-23849012(+)$1	219	69	102	15.6056
auuugguucucauugguccagacgaggaaggua	chr16:23680709-23681004(+)$1	295	63	96	13.5950
UUCCAUUUGCAGAUGUCAAGAACUGUGAGGGAA	chr1:15988931-15989204(+)$1	273	66	99	13.7874
UGUGCCucauugagcaaaucuuuaaugaggauc	chr2:178199020-178199332(-)$1	312	169	202	15.2183
CUGCCUAUCCGCUGCAUCCACAGUGAGGAGGGC	chr17:27074855-27075060(+)$1	205	44	77	11.5900
GUGGUGAGGGUGUUGGCCCGGGCACCCCCUAAG	chr16:66966588-66966815(-)$1	227	147	180	14.2718
UUCCGCUGUCACGGUAAAGUCCGCCAUCAGAAG	chr2:217365975-217366186(+)$1	211	94	127	14.9846
GGUGAUGAUGCUUCAGAGGAGAAGGCAGCCAAC	chr3:48726959-48727244(-)$1	285	178	211	15.1217

#DB
.(((((((...(((......)))..))))))).	chr19:38798153-38798395(-)$1	1	58	91	15.6391
(.(...(..(((((......)).)))..)..).	chr19:4035104-4035326(+)$1	1	105	138	14.8934
((((((...(((((......))).))...))))	chrX:153596352-153596558(-)$1	1	78	111	14.4411
(((.((((((((((......)))))))...)))	chr1:162549136-162549369(+)$1	1	1	34	15.6419
.(((..((((((((((...)))))))))).)))	chr7:128612465-128612688(-)$1	1	158	191	11.8275
((((((...((((((.....))))))...))))	chr2:73470154-73470359(+)$1	1	149	182	11.9441
...(((((...(((...)))....))))).)))	chr7:91752447-91752661(-)$1	1	100	133	9.5928
(((.(((((((((......))))..))))....	chr11:62294982-62295195(-)$1	1	62	95	11.1971
((((((((.(((((......)))).).))))))	chr7:42971615-42971827(-)$1	1	47	80	13.9239
(((((..(((((((......))))))).)))).	chrX:30885154-30885436(-)$1	1	36	69	13.3940
(((((....(((.(((....))))))....)))	chr7:99633735-99633960(+)$1	1	179	212	10.6462
(((((.(((.((((......))))))).)))))	chr6:33268826-33269054(-)$1	1	14	47	13.2020
(((.(((((((((......))).)))))).)))	chr12:125627234-125627503(+)$1	1	34	67	13.0826
(((..((((.((((......))))))))...))	chr10:51580562-51580771(+)$1	1	71	104	13.2202
(((..(((..((((.(.....).))))..))).	chr1:145440420-145440625(+)$1	1	150	183	10.5535
(..((..(((((((......)))...))))...	chr10:27405074-27405310(-)$1	1	111	144	13.9505
(((.(((.....((......))...))).)))(	chr9:19376211-19376430(-)$1	1	13	46	14.7606
.(..(((..((((((.....)))))).))).).	chr12:53776421-53776717(+)$1	1	53	86	10.8357
.((.((((((.(((......))).)))))))).	chr22:41923889-41924111(+)$1	1	167	200	13.5429
(((...(((...((......))...))))))))	chr1:883772-883990(-)$1	1	105	138	14.8082
(....((((((((((.....))).)))))))))	chr15:50474383-50474635(+)$1	1	197	230	11.8800
...((((.((((((......))))).).)))).	chr1:160275447-160275663(-)$1	1	110	143	12.2638
(((((.((((((((......)).))))))))))	chr13:114563889-114564170(-)$1	1	235	268	12.3719
(((.((((...(((((......)))))..))))	chrX:152034322-152034544(+)$1	1	169	202	10.8244
))))(((..((((((.....)))..)))..)))	chr17:49237248-49237494(+)$1	1	102	135	11.9205
))((((((((((.((......)).)))))))))	chr5:149825122-149825325(-)$1	1	169	202	13.9083
.(((..(((.((((......))))..))).)))	chr19:49119260-49119492(-)$1	1	187	220	13.2988
(((.((((((..((......)).))))))))))	chr7:92241762-92242022(-)$1	1	19	52	13.2930
((((((...((.((......))))...))))))	chr7:99711390-99711617(-)$1	1	91	124	13.9931
(((((((((...((((......))))...))))	chr3:47447418-47447636(+)$1	1	165	198	11.3705
(.(((....(((.((......)).)))...)))	chr19:55918082-55918285(-)$1	1	113	146	14.7260
(((((((...(((.(((....))))))...).)	chr19:18684066-18684273(+)$1	1	67	100	10.5117
((((..(((..(((......))).)))..))))	chr6:26158320-26158552(+)$1	1	170	203	15.4236
..(((...((.(((......))))))))..)).	chr3:53322167-53322402(-)$1	1	25	58	14.3855
(((..(((((((((......)))...)))))))	chr9:139757291-139757518(-)$1	1	154	187	13.9735
((..((..((((((......)))))).)).)))	chr1:155984650-155984862(-)$1	1	78	111	12.9482
((....((((..(((.....))))))))))(((	chr3:183896564-183896775(+)$1	1	97	130	10.9316
(((.((...(((((((...)))))))...)).)	chr6:2840598-2840815(-)$1	1	112	145	10.9489
(((((((((.((((.....)))).))).)))))	chr19:13051532-13051747(+)$1	1	4	37	10.5154
((.((((((...((......)).)))))).)))	chr4:667600-667815(-)$1	1	86	119	13.5179
((((.((..(((((......)))))..))))))	chr16:28857307-28857523(-)$1	1	36	69	11.5400
..(((..(...(((......))))..))).)))	chr3:23848793-23849012(+)$1	1	69	102	15.6056
((....(((((.((......)).)))))....)	chr16:23680709-23681004(+)$1	1	63	96	13.5950
((((.(((((((.(......).)))))))))))	chr1:15988931-15989204(+)$1	1	66	99	13.7874
((..((((((((((......))))))))))..)	chr2:178199020-178199332(-)$1	1	169	202	15.2183
..((((.(((((((......))))).)).))))	chr17:27074855-27075060(+)$1	1	44	77	11.5900
.(((.(.(((((((......)))))))))))..	chr16:66966588-66966815(-)$1	1	147	180	14.2718
(((.(.((...(((......))).)).).))))	chr2:217365975-217366186(+)$1	1	94	127	14.9846
(((.....((((((......))).)))....))	chr3:48726959-48727244(-)$1	1	178	211	15.1217

#PSSM
d : 0.20	c : 0.18	e : 0.16	g : 0.10	[ : 0.08	f : 0.06	: : 0.04	" : 0.04	! : 0.04	= : 0.02	i : 0.02	# : 0.02	h : 0.02	
c : 0.22	d : 0.20	g : 0.10	e : 0.10	f : 0.06	! : 0.06	[ : 0.04	" : 0.04	a : 0.04	# : 0.04	= : 0.02	i : 0.02	b : 0.02	h : 0.02	
c : 0.26	d : 0.18	g : 0.08	e : 0.08	! : 0.08	# : 0.08	f : 0.06	= : 0.04	a : 0.02	" : 0.02	i : 0.02	b : 0.02	h : 0.02	[ : 0.02	
[ : 0.18	c : 0.12	! : 0.12	f : 0.10	d : 0.10	g : 0.08	e : 0.08	# : 0.06	" : 0.04	= : 0.04	i : 0.02	b : 0.02	$ : 0.02	
f : 0.14	c : 0.14	! : 0.12	g : 0.08	d : 0.08	= : 0.06	e : 0.06	b : 0.06	# : 0.06	[ : 0.06	" : 0.04	a : 0.04	i : 0.02	$ : 0.02	
f : 0.14	g : 0.12	! : 0.12	c : 0.10	d : 0.10	# : 0.08	" : 0.06	= : 0.06	[ : 0.06	b : 0.06	e : 0.02	i : 0.02	a : 0.02	$ : 0.02	
c : 0.20	f : 0.14	" : 0.10	d : 0.10	! : 0.08	g : 0.06	= : 0.06	a : 0.04	e : 0.04	# : 0.04	b : 0.04	[ : 0.04	i : 0.02	$ : 0.02	
f : 0.14	g : 0.12	" : 0.12	c : 0.12	! : 0.10	d : 0.10	= : 0.06	e : 0.04	# : 0.04	$ : 0.04	b : 0.04	i : 0.02	[ : 0.02	a : 0.02	
" : 0.20	f : 0.16	c : 0.12	! : 0.10	g : 0.10	d : 0.08	= : 0.06	# : 0.04	b : 0.04	[ : 0.02	$ : 0.02	a : 0.02	e : 0.02	
" : 0.18	f : 0.16	g : 0.12	c : 0.10	[ : 0.08	e : 0.08	b : 0.06	= : 0.06	d : 0.06	! : 0.04	a : 0.02	$ : 0.02	
" : 0.16	d : 0.16	c : 0.14	g : 0.12	f : 0.10	e : 0.08	= : 0.06	! : 0.06	b : 0.04	[ : 0.04	$ : 0.02	
c : 0.34	d : 0.14	g : 0.12	f : 0.08	e : 0.08	= : 0.06	" : 0.06	! : 0.04	[ : 0.04	$ : 0.02	
c : 0.32	b : 0.16	d : 0.16	g : 0.08	[ : 0.08	e : 0.08	f : 0.06	= : 0.04	
c : 0.30	b : 0.20	d : 0.14	g : 0.08	e : 0.08	f : 0.06	= : 0.04	o : 0.04	[ : 0.02	a : 0.02	
o : 0.67	c : 0.10	f : 0.04	b : 0.04	= : 0.02	l : 0.02	[ : 0.02	e : 0.02	d : 0.02	g : 0.02	n : 0.02	
o : 0.71	n : 0.12	c : 0.04	= : 0.02	l : 0.02	a : 0.02	e : 0.02	d : 0.02	g : 0.02	
o : 0.75	n : 0.14	l : 0.06	m : 0.02	c : 0.02	
o : 0.75	n : 0.14	l : 0.04	m : 0.04	c : 0.02	
o : 0.75	n : 0.14	l : 0.04	m : 0.04	c : 0.02	
o : 0.71	n : 0.12	c : 0.04	d : 0.04	m : 0.04	= : 0.02	g : 0.02	
c : 0.30	b : 0.16	d : 0.12	g : 0.08	o : 0.08	f : 0.06	e : 0.06	= : 0.04	4 : 0.02	n : 0.02	m : 0.02	a : 0.02	
c : 0.32	b : 0.20	d : 0.12	g : 0.08	f : 0.06	e : 0.06	= : 0.04	o : 0.04	4 : 0.02	a : 0.02	] : 0.02	
c : 0.30	] : 0.14	d : 0.14	g : 0.10	e : 0.08	f : 0.06	b : 0.06	= : 0.04	3 : 0.04	4 : 0.02	
] : 0.18	f : 0.14	d : 0.14	g : 0.10	e : 0.10	3 : 0.08	2 : 0.06	c : 0.06	= : 0.04	b : 0.04	4 : 0.02	a : 0.02	
c : 0.16	f : 0.16	g : 0.12	e : 0.12	2 : 0.10	3 : 0.10	d : 0.08	b : 0.06	= : 0.06	] : 0.02	
c : 0.24	f : 0.16	g : 0.14	d : 0.10	= : 0.06	e : 0.06	3 : 0.06	2 : 0.06	b : 0.04	] : 0.04	a : 0.02	
c : 0.24	g : 0.12	f : 0.12	3 : 0.10	d : 0.10	] : 0.08	= : 0.06	e : 0.06	2 : 0.04	4 : 0.02	a : 0.02	b : 0.02	
c : 0.16	3 : 0.14	f : 0.12	g : 0.08	2 : 0.08	] : 0.08	= : 0.06	d : 0.06	b : 0.06	e : 0.04	4 : 0.04	a : 0.04	i : 0.02	
3 : 0.16	f : 0.12	g : 0.10	2 : 0.10	c : 0.10	d : 0.08	= : 0.06	e : 0.06	4 : 0.06	] : 0.06	b : 0.04	a : 0.02	i : 0.02	
d : 0.16	] : 0.14	f : 0.12	c : 0.10	g : 0.08	3 : 0.08	4 : 0.08	2 : 0.06	= : 0.06	e : 0.06	i : 0.02	b : 0.02	
c : 0.22	d : 0.16	f : 0.12	e : 0.10	g : 0.08	4 : 0.08	b : 0.06	2 : 0.04	= : 0.04	i : 0.02	3 : 0.02	] : 0.02	a : 0.02	
c : 0.20	d : 0.20	f : 0.12	e : 0.12	g : 0.06	4 : 0.06	a : 0.04	= : 0.04	b : 0.04	] : 0.04	2 : 0.04	i : 0.02	
c : 0.18	d : 0.16	e : 0.14	f : 0.10	] : 0.08	g : 0.08	3 : 0.04	= : 0.04	4 : 0.04	2 : 0.04	i : 0.02	7 : 0.02	h : 0.02	a : 0.02	

#score	639.8206398669431
#seq	49
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_CDS_m3_run2.txt

#BEAR
b[gggggggnnnnngggggggbb:	chr1:227164984-227165296(+)$1	312	282	306	9.2883
!!ffffffnnnnnffffffeeeee	chr9:130160098-130160349(+)$1	251	7	31	9.2364
ffffffcccnnnnnccc]ffffff	chr19:3543354-3543603(-)$1	249	89	113	10.0920
ccc[cccaooooooa]ccc]ccc:	chr17:74077666-74077932(-)$1	266	132	156	9.7444
hh!!acccooooooccc333a22h	chr2:231902758-231902992(+)$1	234	148	172	9.9314
eeffffffooooooffffff]eee	chr22:37964458-37964720(+)$1	262	138	162	10.4705
b[bbddddoooooodddd]bb]bb	chr17:73512685-73512930(+)$1	245	154	178	7.6684
:gggggggnnnnngggggggeeee	chr19:45854463-45854706(-)$1	243	62	86	8.5967
gggggggcccmmmmccc]gggggg	chr9:97767347-97767605(+)$1	258	191	215	7.8742
ee!!eeeeennnnneeeeeeeeee	chr1:27320426-27320697(+)$1	271	5	29	8.7037
dddd[cccoooooocccdddd]a2	chr8:145687815-145688067(-)$1	252	22	46	9.2053
f[gggggggnnnnnggggggg]ff	chr16:4660094-4660317(-)$1	223	7	31	10.9404
[a[bb[bboooooobb]bb]a]a]	chr1:38274022-38274309(+)$1	287	195	219	8.9810
ee[eeeeeooooooeeeee]eeee	chr6:37138568-37138883(+)$1	315	216	240	9.3748
!!a[ccc[ccclllccc]ccc]a2	chr19:41255423-41255693(-)$1	270	190	214	8.5063
eee[eeeeennnnneeeee333ee	chr19:1254002-1254271(+)$1	269	233	257	9.0003
cciiiiiiiiillliiiiiiiii:	chr1:28845142-28845411(+)$1	269	199	223	7.3805
ccffffffooooooffffff]ccc	chr7:150777749-150777982(-)$1	233	93	117	10.6790
ccffffffooooooffffff]ccc	chr7:150777690-150777949(-)$1	259	60	84	10.6790
d"""ddddoooooodddd333ddd	chr19:460720-460967(-)$1	247	156	180	8.7343
GGgggggggnnnnnggggggg:ii	chr2:128180658-128180880(+)$1	222	56	80	8.5533
========oooooo==========	chr16:68266478-68266779(-)$1	301	5	29	11.0304
[ccc!!bboooooobb22ccc]cc	chr9:80646039-80646327(-)$1	288	204	228	9.4783
gggg[a[aooooooa]a]gggggg	chr16:87426130-87426483(+)$1	353	313	337	10.6768
!!ffffffnnnnnffffffhhhhh	chr14:102786104-102786370(+)$1	266	209	233	8.6184
dd!!ggggggglllggggggg]dd	chr1:2160039-2160323(+)$1	284	238	262	8.1368
ccceeeeeooooooeeeee]ccc]	chr19:2272816-2273083(+)$1	267	15	39	9.4553
ff"""ddddnnnnnddddffffff	chr19:460530-460774(-)$1	244	153	177	8.1628
dd[a!!bboooooobb22a]dddd	chr17:79913316-79913634(-)$1	318	282	306	8.4503
$$ffffffooooooffffff333b	chr11:637284-637535(+)$1	251	175	199	10.4535
d[bb[cccoooooocccbb]dddd	chr17:79860506-79860775(-)$1	269	65	89	9.3894
fffff[cccnnnnnccc]ffffff	chr19:35500162-35500505(+)$1	343	186	210	10.2112
eeeeecccooooooccc]eeeeeE	chr9:74979420-74979699(-)$1	279	251	275	9.2538
"gggggggooooooggggggg]ee	chr2:231902513-231902748(+)$1	235	184	208	11.4722
ggggggg[annnnna]ggggggg]	chr3:186502077-186502320(+)$1	243	29	53	10.7897
###ffffffnnnnnffffff4444	chr2:128180680-128180964(+)$1	284	215	239	10.1790
c[ffffffooooooffffff]ccc	chr17:30264209-30264498(+)$1	289	96	120	10.9678
fffffffffnnnnnffffff]fff	chr6:34857057-34857318(+)$1	261	171	195	9.7511
a[ccc[ccclllccc]ccc]a]cc	chr15:78369842-78370059(-)$1	217	129	153	9.0234
"""ffffffnnnnnffffff4444	chr16:1823165-1823423(+)$1	258	83	107	10.3052
b[gggggggnnnnnggggggg]bb	chr21:47565651-47565894(-)$1	243	49	73	10.6304
!!ccc[cccnnnnnccc]ccc]cc	chr20:62371148-62371379(+)$1	231	116	140	11.1247
eeeee[cccnnnnnccc]eeeeeE	chr19:460830-461083(-)$1	253	200	224	8.9932
gggggg!!annnnna22ggggggg	chr12:58005524-58005834(+)$1	310	163	187	9.9832
ee"""cccooooooccc22eeeee	chr19:2270511-2270777(+)$1	266	18	42	9.8672
a[ccc[ccclllccc]ccc]a]cc	chr15:78369860-78370070(-)$1	210	140	164	9.0234
b[gggggggnnnnnggggggg]bb	chr17:46985879-46986153(+)$1	274	24	48	10.6304
[ccc!!ccclllccc]ccc]a]dd	chr12:132414113-132414376(+)$1	263	118	142	8.6089

#otherMatches

#Seq PSSM
GAGGGUUGAGCCUGUCAGCCCCCA	chr1:227164984-227165296(+)$1	312	282	306	9.2883
GAGCCCGCGGGGAGUGGGUGGAGG	chr9:130160098-130160349(+)$1	251	7	31	9.2364
CUCUGGCAGGCCCGCUGCCCAGGG	chr19:3543354-3543603(-)$1	249	89	113	10.0920
CCUGCACCAGGGAGGAGUGGAGGA	chr17:74077666-74077932(-)$1	266	132	156	9.7444
GCAACCAGGUGAGACUgcgcgggg	chr2:231902758-231902992(+)$1	234	148	172	9.9314
GCCCUCGGCAGGCACUGGGGAGCA	chr22:37964458-37964720(+)$1	262	138	162	10.4705
UUCGCCGCCCGCUCGCGGUCGCAG	chr17:73512685-73512930(+)$1	245	154	178	7.6684
AAGCUGCGGCCAGCGCAGUUCACU	chr19:45854463-45854706(-)$1	243	62	86	8.5967
CGCCGGCGCGAGACCGCGGCUGGC	chr9:97767347-97767605(+)$1	258	191	215	7.8742
cgccgcugccGGACGCAGCUGGGG	chr1:27320426-27320697(+)$1	271	5	29	8.7037
cggccgcuauguccggcgccgagg	chr8:145687815-145688067(-)$1	252	22	46	9.2053
CUCCCCCUGAGACCUGGGGGGCGC	chr16:4660094-4660317(-)$1	223	7	31	10.9404
GGACCGCGGGAAGGCGGGGCUGGG	chr1:38274022-38274309(+)$1	287	195	219	8.9810
GGAUUUCCGACUGGGGAGAGCUGG	chr6:37138568-37138883(+)$1	315	216	240	9.3748
CCCGUCAUGUCUUCGGCCUGGAGA	chr19:41255423-41255693(-)$1	270	190	214	8.5063
UGCAGCUGCAGCUCGCGGCCCAGC	chr19:1254002-1254271(+)$1	269	233	257	9.0003
CUGUCAGCAGAUUAUUUGCUGGCC	chr1:28845142-28845411(+)$1	269	199	223	7.3805
GGCUGCUGGGAAGAUGGCGGACUC	chr7:150777749-150777982(-)$1	233	93	117	10.6790
GGCUGCUGGGAAGAUGGCGGACUC	chr7:150777690-150777949(-)$1	259	60	84	10.6790
ccaacccgagccggcgggcccggg	chr19:460720-460967(-)$1	247	156	180	8.7343
GCAGCGGCUGGGAGGGCCGCUUCU	chr2:128180658-128180880(+)$1	222	56	80	8.5533
GGUGGGGACACCCCUCUCCACCAG	chr16:68266478-68266779(-)$1	301	5	29	11.0304
GCCUGAGCGAGGAGGCCAAGGAAG	chr9:80646039-80646327(-)$1	288	204	228	9.4783
CGCGCUGCGGGCGAGGGUCGCGCU	chr16:87426130-87426483(+)$1	353	313	337	10.6768
ACGCGGCCCAACAGGCCGCCCUGC	chr14:102786104-102786370(+)$1	266	209	233	8.6184
CACCUGAGCUCCAUGAGCUCGCUG	chr1:2160039-2160323(+)$1	284	238	262	8.1368
UAUCGCCUGCAGUAGGGUGCGUGG	chr19:2272816-2273083(+)$1	267	15	39	9.4553
AUCCGGAAGGGCAGCUUCAUCCAC	chr19:460530-460774(-)$1	244	153	177	8.1628
GGGCAGCCGGUGCAGGAGGGCCUG	chr17:79913316-79913634(-)$1	318	282	306	8.4503
CUCGCUCGUGUGCGUGAGCGUGGC	chr11:637284-637535(+)$1	251	175	199	10.4535
CGCCAUCCCGCGCCGGAGGGGCCU	chr17:79860506-79860775(-)$1	269	65	89	9.3894
UAAGUGUCUGGGCAAGGGGCUUGC	chr19:35500162-35500505(+)$1	343	186	210	10.2112
GACGGAGGCGUCAUCCUGUCGUCG	chr9:74979420-74979699(-)$1	279	251	275	9.2538
gcggcgcUGGUCGGGGUGCUGGUG	chr2:231902513-231902748(+)$1	235	184	208	11.4722
UUAGCUUGUGCAGGGGAGGCUAAC	chr3:186502077-186502320(+)$1	243	29	53	10.7897
UUACUGCCUAGAGGAGGUGGGCUG	chr2:128180680-128180964(+)$1	284	215	239	10.1790
CGGGGCCCAGCGCGGGGUCCGGGG	chr17:30264209-30264498(+)$1	289	96	120	10.9678
CGGCGGUGGAGAAGCUGCUGUCCG	chr6:34857057-34857318(+)$1	261	171	195	9.7511
cggccgcggagcccggggcgggUC	chr15:78369842-78370059(-)$1	217	129	153	9.0234
GAGGGCGGGGGUCUCUUGCCAGGG	chr16:1823165-1823423(+)$1	258	83	107	10.3052
CGCGGGCCUGAGCGAGGCCUGGGC	chr21:47565651-47565894(-)$1	243	49	73	10.6304
cauggagcgccccccgccccgcgc	chr20:62371148-62371379(+)$1	231	116	140	11.1247
GGCCCCGGGCGGCUUCCUgggccg	chr19:460830-461083(-)$1	253	200	224	8.9932
GGCACAAAGGGGGUCGCUGUGCCU	chr12:58005524-58005834(+)$1	310	163	187	9.9832
GCACUCCGACAGCCCGGCAGCGCC	chr19:2270511-2270777(+)$1	266	18	42	9.8672
cggccgcggagcccggggcgggUC	chr15:78369860-78370070(-)$1	210	140	164	9.0234
cgccggggcggcgggccccggggc	chr17:46985879-46986153(+)$1	274	24	48	10.6304
GAUCAGGGCGGGGUCGGGUGCACU	chr12:132414113-132414376(+)$1	263	118	142	8.6089

#DB
(.(((((((.....))))))))).	chr1:227164984-227165296(+)$1	1	282	306	9.2883
..((((((.....)))))))))))	chr9:130160098-130160349(+)$1	1	7	31	9.2364
(((((((((.....))).))))))	chr19:3543354-3543603(-)$1	1	89	113	10.0920
(((.((((......).))).))).	chr17:74077666-74077932(-)$1	1	132	156	9.7444
((..((((......)))...)..)	chr2:231902758-231902992(+)$1	1	148	172	9.9314
((((((((......)))))).)))	chr22:37964458-37964720(+)$1	1	138	162	10.4705
(.((((((......)))).)).))	chr17:73512685-73512930(+)$1	1	154	178	7.6684
.(((((((.....)))))))((((	chr19:45854463-45854706(-)$1	1	62	86	8.5967
((((((((((....))).))))))	chr9:97767347-97767605(+)$1	1	191	215	7.8742
((..(((((.....))))))))))	chr1:27320426-27320697(+)$1	1	5	29	8.7037
((((.(((......))))))).).	chr8:145687815-145688067(-)$1	1	22	46	9.2053
(.(((((((.....))))))).))	chr16:4660094-4660317(-)$1	1	7	31	10.9404
.(.((.((......)).)).).).	chr1:38274022-38274309(+)$1	1	195	219	8.9810
((.(((((......))))).))))	chr6:37138568-37138883(+)$1	1	216	240	9.3748
..(.(((.(((...))).))).).	chr19:41255423-41255693(-)$1	1	190	214	8.5063
(((.(((((.....)))))...))	chr19:1254002-1254271(+)$1	1	233	257	9.0003
))(((((((((...))))))))).	chr1:28845142-28845411(+)$1	1	199	223	7.3805
((((((((......)))))).)))	chr7:150777749-150777982(-)$1	1	93	117	10.6790
((((((((......)))))).)))	chr7:150777690-150777949(-)$1	1	60	84	10.6790
(...((((......))))...)))	chr19:460720-460967(-)$1	1	156	180	8.7343
(((((((((.....))))))).((	chr2:128180658-128180880(+)$1	1	56	80	8.5533
((((((((......))))))))))	chr16:68266478-68266779(-)$1	1	5	29	11.0304
.(((..((......))..))).))	chr9:80646039-80646327(-)$1	1	204	228	9.4783
((((.(.(......).).))))))	chr16:87426130-87426483(+)$1	1	313	337	10.6768
..((((((.....)))))))))))	chr14:102786104-102786370(+)$1	1	209	233	8.6184
((..(((((((...))))))).))	chr1:2160039-2160323(+)$1	1	238	262	8.1368
((((((((......))))).))).	chr19:2272816-2273083(+)$1	1	15	39	9.4553
((...((((.....))))))))))	chr19:460530-460774(-)$1	1	153	177	8.1628
((.(..((......))..).))))	chr17:79913316-79913634(-)$1	1	282	306	8.4503
..((((((......))))))...)	chr11:637284-637535(+)$1	1	175	199	10.4535
(.((.(((......))))).))))	chr17:79860506-79860775(-)$1	1	65	89	9.3894
(((((.(((.....))).))))))	chr19:35500162-35500505(+)$1	1	186	210	10.2112
((((((((......))).))))))	chr9:74979420-74979699(-)$1	1	251	275	9.2538
.(((((((......))))))).))	chr2:231902513-231902748(+)$1	1	184	208	11.4722
(((((((.(.....).))))))).	chr3:186502077-186502320(+)$1	1	29	53	10.7897
...((((((.....))))))....	chr2:128180680-128180964(+)$1	1	215	239	10.1790
(.((((((......)))))).)))	chr17:30264209-30264498(+)$1	1	96	120	10.9678
(((((((((.....)))))).)))	chr6:34857057-34857318(+)$1	1	171	195	9.7511
(.(((.(((...))).))).).))	chr15:78369842-78370059(-)$1	1	129	153	9.0234
...((((((.....))))))....	chr16:1823165-1823423(+)$1	1	83	107	10.3052
(.(((((((.....))))))).))	chr21:47565651-47565894(-)$1	1	49	73	10.6304
..(((.(((.....))).))).))	chr20:62371148-62371379(+)$1	1	116	140	11.1247
(((((.(((.....))).))))))	chr19:460830-461083(-)$1	1	200	224	8.9932
((((((..(.....)..)))))))	chr12:58005524-58005834(+)$1	1	163	187	9.9832
((...(((......)))..)))))	chr19:2270511-2270777(+)$1	1	18	42	9.8672
(.(((.(((...))).))).).))	chr15:78369860-78370070(-)$1	1	140	164	9.0234
(.(((((((.....))))))).))	chr17:46985879-46986153(+)$1	1	24	48	10.6304
.(((..(((...))).))).).))	chr12:132414113-132414376(+)$1	1	118	142	8.6089

#PSSM
e : 0.14	c : 0.12	f : 0.10	d : 0.10	b : 0.08	! : 0.08	g : 0.08	[ : 0.06	" : 0.04	a : 0.04	h : 0.02	: : 0.02	G : 0.02	= : 0.02	$ : 0.02	# : 0.02	
[ : 0.18	c : 0.14	e : 0.14	g : 0.12	! : 0.08	f : 0.08	d : 0.06	" : 0.04	h : 0.02	a : 0.02	G : 0.02	= : 0.02	$ : 0.02	# : 0.02	
g : 0.22	f : 0.20	c : 0.14	" : 0.08	! : 0.06	[ : 0.06	e : 0.06	b : 0.04	d : 0.02	a : 0.02	i : 0.02	= : 0.02	# : 0.02	
f : 0.25	g : 0.22	c : 0.10	e : 0.08	[ : 0.06	! : 0.06	b : 0.06	" : 0.06	d : 0.02	i : 0.02	= : 0.02	a : 0.02	
f : 0.25	g : 0.22	e : 0.12	c : 0.10	[ : 0.06	! : 0.06	d : 0.04	" : 0.04	a : 0.02	b : 0.02	i : 0.02	= : 0.02	
g : 0.22	f : 0.22	c : 0.14	[ : 0.12	e : 0.08	d : 0.06	! : 0.06	i : 0.02	= : 0.02	a : 0.02	
c : 0.29	g : 0.20	f : 0.20	e : 0.08	d : 0.06	b : 0.06	i : 0.02	= : 0.02	[ : 0.02	! : 0.02	
c : 0.27	f : 0.20	g : 0.16	e : 0.08	d : 0.06	b : 0.06	a : 0.04	[ : 0.04	i : 0.02	= : 0.02	! : 0.02	
o : 0.43	c : 0.18	g : 0.12	n : 0.06	f : 0.06	e : 0.04	a : 0.04	i : 0.02	d : 0.02	
o : 0.43	n : 0.41	l : 0.06	c : 0.04	i : 0.02	g : 0.02	
o : 0.43	n : 0.41	l : 0.06	m : 0.02	c : 0.02	i : 0.02	g : 0.02	
o : 0.43	n : 0.41	l : 0.12	m : 0.02	
o : 0.43	n : 0.41	l : 0.06	c : 0.06	m : 0.02	
o : 0.43	n : 0.35	l : 0.06	c : 0.06	f : 0.04	g : 0.02	m : 0.02	
c : 0.29	f : 0.20	g : 0.16	a : 0.08	e : 0.08	d : 0.06	b : 0.06	i : 0.02	= : 0.02	
c : 0.22	f : 0.20	g : 0.16	] : 0.12	e : 0.08	d : 0.06	b : 0.06	i : 0.02	= : 0.02	2 : 0.02	
c : 0.31	f : 0.20	g : 0.18	e : 0.08	d : 0.06	2 : 0.06	] : 0.02	i : 0.02	= : 0.02	a : 0.02	
g : 0.20	f : 0.20	] : 0.16	c : 0.08	d : 0.08	e : 0.08	2 : 0.06	b : 0.04	3 : 0.02	i : 0.02	= : 0.02	
f : 0.27	g : 0.25	c : 0.14	e : 0.12	3 : 0.04	b : 0.04	] : 0.02	d : 0.02	i : 0.02	= : 0.02	a : 0.02	2 : 0.02	
g : 0.25	f : 0.22	] : 0.18	e : 0.10	3 : 0.06	c : 0.06	b : 0.02	d : 0.02	i : 0.02	= : 0.02	h : 0.02	
g : 0.22	e : 0.14	c : 0.10	a : 0.10	] : 0.10	f : 0.06	d : 0.06	3 : 0.06	4 : 0.04	b : 0.02	i : 0.02	= : 0.02	h : 0.02	
] : 0.29	e : 0.16	c : 0.10	f : 0.08	g : 0.08	d : 0.06	3 : 0.04	4 : 0.04	b : 0.02	2 : 0.02	i : 0.02	: : 0.02	= : 0.02	h : 0.02	
e : 0.20	c : 0.18	f : 0.10	d : 0.10	b : 0.08	g : 0.08	a : 0.06	i : 0.04	4 : 0.04	2 : 0.02	= : 0.02	h : 0.02	3 : 0.02	
e : 0.16	c : 0.14	f : 0.10	d : 0.10	b : 0.08	: : 0.06	g : 0.06	] : 0.06	h : 0.04	2 : 0.04	E : 0.04	4 : 0.04	i : 0.02	= : 0.02	

#score	458.3097746806709
#seq	48
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_transcript_m2_run2.txt

#BEAR
g[eeeee[ffffffmmmmffffff]eeeee]	chr17:7476136-7476368(+)$1	232	51	82	10.7841
gggg!!bb"""cccmmmmccc22bb]ggggg	chr3:150320753-150321084(-)$1	331	280	311	13.4534
$$$$$dddd!!cccmmmmccc]ddddeeeee	chr16:71323006-71323288(-)$1	282	96	127	12.4125
ffffffffff!!bbmmmmbb333ffffff33	chr6:692848-693199(-)$1	351	148	179	12.4379
b:eeeee[ccccccmmmmccc]ccceeeee:	chr16:4421748-4421997(+)$1	249	151	182	11.8323
[ccc[eeeee[cccmmmmccc22eeeeeccc	chr2:38829751-38830030(-)$1	279	46	77	13.4579
ccc[dddd!!ddddmmmmdddd]dddd]ccc	chr2:176866834-176867096(-)$1	262	34	65	10.8790
fffff[ccc[ddddmmmmddddccc333fff	chr16:89556785-89557067(-)$1	282	64	95	11.5389
eeee[ffffff[bbmmmmbb]ffffffeeee	chr10:86088255-86088652(+)$1	397	14	45	11.1306
eeeee[ccc"""bbmmmmbb333ccceeeee	chr16:89882878-89883153(-)$1	275	165	196	13.4281
ffffff!!ccccccmmmmccc]ccc]fffff	chr11:69461606-69461901(+)$1	295	249	280	13.5450
ddffffff[a[cccmmmmccc]a]ffffff]	chr17:62223261-62223465(+)$1	204	65	96	13.2939
cc[bbeeeee[cccmmmmccc]eeeee]bb]	chr17:42402032-42402294(-)$1	262	5	36	12.4963
f[cccccc[cccbbmmmmbb]cccccc333c	chr17:75303120-75303363(+)$1	243	99	130	12.7511
iiiiiiiii[a[bbmmmmbb]aiiiiiiiii	chr15:50978814-50979100(-)$1	286	150	181	13.0083
bb!!cccgggggggmmmmggggggg]ccc]b	chr5:87564430-87564742(-)$1	312	205	236	11.6637
[cccccc[bb[cccmmmmccc]bbccc]ccc	chr20:34252538-34252824(-)$1	286	61	92	13.1598
!bb!!eeeee[cccmmmmccceeeee22bb2	chr6:31926564-31926839(-)$1	275	111	142	11.5515
dd!!accc####bbmmmmbb4444ccc]a22	chr16:53088852-53089238(+)$1	386	58	89	13.0001
ddddddd[a[ddddmmmmdddd]adddd]dd	chr12:111180479-111180692(-)$1	213	126	157	10.0269
:gggggggccc[bbmmmmbb]ccc]gggggg	chr20:47662829-47663061(+)$1	232	196	227	11.8905
gggg!!dddd[cccmmmmcccdddd]ggggg	chr9:102861470-102861802(+)$1	332	102	133	13.0856
""ggggggg!!cccmmmmccc666666gggg	chrX:55744102-55744407(+)$1	305	65	96	11.5227
eeeee[ccc[ddddllldddd]ccc]eeeee	chr9:131790320-131790607(-)$1	287	188	219	9.6425
$$$eeeee"""cccmmmmccc333eeeeeee	chr11:705000-705275(-)$1	275	13	44	13.7038
dffffff[ccccccmmmmccc]ccc]fffff	chr8:144676323-144676558(-)$1	235	18	49	13.4375
c[dddd[ccc[cccmmmmccccccdddd]cc	chr22:29279484-29279832(+)$1	348	176	207	12.9655
ccc[==========lll==========]ccc	chr11:568252-568540(-)$1	288	237	268	11.2973
fffff!!ccc[cccmmmmccc]cccffffff	chr7:99679176-99679445(-)$1	269	71	102	13.8259
EEggggggg[a[bbmmmmbb]a]ggggggg:	chr1:1821658-1821890(-)$1	232	51	82	10.3626
eeee[dddd[a[bbmmmmbba]dddd]eeee	chr20:55926208-55926456(+)$1	248	7	38	11.8366
fffff[eeeeecccmmmmccc22eeeee]ff	chr10:105726868-105727150(+)$1	282	13	44	12.5506
g####gggggggbbmmmmbb]ggggggg]gg	chr13:111805934-111806176(+)$1	242	23	54	12.8530
ncccggggggg[ccclllcccgggggggfff	chr11:64660686-64661021(-)$1	335	129	160	10.1241
eeeggggggg[cccoooooocccggggggg4	chr6:33239250-33239549(-)$1	299	225	256	10.6204
$$$$ffffff[cccmmmmccc]ffffffddd	chr3:148847342-148847658(+)$1	316	75	106	12.1162
ccc[bb[ccc[cccmmmmccc]ccc]bb]cc	chr21:46493674-46493970(+)$1	296	236	267	13.5020
dd!!==========mmmm==========22d	chr3:38178319-38178688(-)$1	369	24	55	12.9981
ccca!!a[ffffffmmmmffffffa22a]cc	chr19:5719784-5720053(-)$1	269	7	38	10.6676
[eeeee####ddddmmmmddddeeeee]hhh	chr17:56160733-56161027(+)$1	294	182	213	10.5082
ee!!ccc!!ddddammmma]dddd22ccc]e	chr16:30621400-30621718(-)$1	318	281	312	10.7377
ggg!!iiiiiiiiimmmmiiiiiiiii22gg	chr9:127533321-127533689(-)$1	368	327	358	12.6566
b!!a[bb!!a[cccmmmmccc]a22bb]a22	chr6:53659727-53660074(+)$1	347	74	105	12.7009
fffffeeeee[cccmmmmccc]eeeeeccc!	chr7:104653307-104653590(-)$1	283	13	44	12.6754
Diiiiiiiii[cccmmmmccciiiiiiiii:	chr17:29151440-29151805(-)$1	365	65	96	12.3723
eee[a!!ccc"""ammmma333ccc22a]ee	chr20:49574882-49575167(-)$1	285	111	142	12.8098
###bb[ccc!!cccmmmmccc22ccc]bb33	chr19:12902212-12902462(+)$1	250	58	89	13.4799
dddd####ccccccmmmmccc22ccc4444d	chr1:184723808-184724084(-)$1	276	133	164	12.7863
b"""eeeee[acccmmmmccc]a]eeeee33	chr2:9770928-9771213(-)$1	285	103	134	13.8487
!a[ggggggg!!bbmmmmbb333ggggggg]	chr20:60627130-60627378(-)$1	248	20	51	14.0674
iiiiiiiii[ddddllldddd]iiiiiiiii	chr19:51307726-51307952(-)$1	226	59	90	9.8993
""eeeee[ccccccmmmmccc]ccc]eeeee	chr11:9482556-9482813(+)$1	257	40	71	14.0667
dddd[a[ccc[cccmmmmcccccc]a]dddd	chr2:120189549-120189852(+)$1	303	37	68	12.7349
b!!dddd####cccmmmmccc333dddd22b	chr12:72057362-72057631(-)$1	269	4	35	12.9742
iiia[ccc[bb[bbmmmmbb]bb]ccc]a22	chr6:148663875-148664189(+)$1	314	176	207	11.2249
eee!!ccc"""cccmmmmccc333ccceeee	chr10:82213977-82214249(+)$1	272	240	271	14.6914

#otherMatches

#Seq PSSM
AAAGGCAUUUGCAAGAGAUUGUGGCUGCUUA	chr17:7476136-7476368(+)$1	232	51	82	10.7841
UGGAAACACCUACUUUAUAGUCCUGAUUCAA	chr3:150320753-150321084(-)$1	331	280	311	13.4534
ACCAUCUCCCUGCCUUGUGGCUGGAGGCGCC	chr16:71323006-71323288(-)$1	282	96	127	12.4125
UGCCGGCCGUGAGCUGCGGCAGGACGGCUGG	chr6:692848-693199(-)$1	351	148	179	12.4379
CUUCGGGACCCAGGACCCCCUCGGGCCCGAC	chr16:4421748-4421997(+)$1	249	151	182	11.8323
CGGCCGCUCCAGAGCUUCCUCCCGGGGCGCC	chr2:38829751-38830030(-)$1	279	46	77	13.4579
CCGACCGCGGCGCCAAUUGGCGAGCGGCUGG	chr2:176866834-176867096(-)$1	262	34	65	10.8790
GCUCCCGCCGCAGCCGCCGCUGGGUCCUGGA	chr16:89556785-89557067(-)$1	282	64	95	11.5389
CGUGAGGCUCGCGCCUGCGCAcgggcccgcg	chr10:86088255-86088652(+)$1	397	14	45	11.1306
CCAGGACCCAGGGGGCCGCCGGAGGGCCUGG	chr16:89882878-89883153(-)$1	275	165	196	13.4281
CCAGUCCUCCAGGGGUGUCCCAUGGUGACUG	chr11:69461606-69461901(+)$1	295	249	280	13.5450
UGUCUUUCAGCGCCUGCAGGUUCCGGGAGGU	chr17:62223261-62223465(+)$1	204	65	96	13.2939
GGGCGGAGCCGGGGACACUCCGGGCUUGCGG	chr17:42402032-42402294(-)$1	262	5	36	12.4963
UAGGAGGCACGCGGACCUCCAGUGGCCGGCU	chr17:75303120-75303363(+)$1	243	99	130	12.7511
UGUGGCCAGUCACCCGGAGGAGUUGGUCGCA	chr15:50978814-50979100(-)$1	286	150	181	13.0083
GUGAGUUCUUCUGUGAGGGCAGGAGUGACAA	chr5:87564430-87564742(-)$1	312	205	236	11.6637
UGGGGCUGUCGGCCGCGGGGCGGAGGCACUC	chr20:34252538-34252824(-)$1	286	61	92	13.1598
AUCAGCGGCCAGCGCGGGCGCGGCCGGAGAC	chr6:31926564-31926839(-)$1	275	111	142	11.5515
GGCGCAGCGACAGCGACAGCGACAGCUCGAA	chr16:53088852-53089238(+)$1	386	58	89	13.0001
ccgggcgcgagccggcggcggcgccgcUGCG	chr12:111180479-111180692(-)$1	213	126	157	10.0269
GCGCUCCCGGUACUAACGAGCGCUAGGGAGU	chr20:47662829-47663061(+)$1	232	196	227	11.8905
CUAGCUUCAGCGCCGUGGGGUCUGACCUGGC	chr9:102861470-102861802(+)$1	332	102	133	13.0856
CUCCGGGGUAAGGCAGAUGCCCACGUGAUCC	chrX:55744102-55744407(+)$1	305	65	96	11.5227
GAAGAAGCUGGCGUCGGACGCGGGCAUCUUC	chr9:131790320-131790607(-)$1	287	188	219	9.6425
CAGGGACCCAAGGCUCCGGCUGCCGGUCCUG	chr11:705000-705275(-)$1	275	13	44	13.7038
UGUGAGGGCCAUGCCGCUGCAGUGGGUCUUG	chr8:144676323-144676558(-)$1	235	18	49	13.4375
UGGGGCUGUGAGGCGUCCGCCCGCGUUCGGU	chr22:29279484-29279832(+)$1	348	176	207	12.9655
CCGCCCUCCCGCGGGGGCUGCGGGGGGUCGG	chr11:568252-568540(-)$1	288	237	268	11.2973
GCGAAACGAGGGGGAACUUCCGUUCUUUGUU	chr7:99679176-99679445(-)$1	269	71	102	13.8259
ucggcggccggagcccccgcgcgggccgccU	chr1:1821658-1821890(-)$1	232	51	82	10.3626
UUUUGCGCAUGUGCUGUCGCCUUGCGGGAAA	chr20:55926208-55926456(+)$1	248	7	38	11.8366
cgcgcgggcgcgcUACGGAGUCGGCGUCGGC	chr10:105726868-105727150(+)$1	282	13	44	12.5506
ccgcgcgggccggcgggggcgcggUCUGAGG	chr13:111805934-111806176(+)$1	242	23	54	12.8530
CGGCACUCAGGUAAGAGGCUUCCUGAGUGGU	chr11:64660686-64661021(-)$1	335	129	160	10.1241
GCUCCUAGCUUCAGAAAGACCUGAGCUGGGU	chr6:33239250-33239549(-)$1	299	225	256	10.6204
CGCUCGCGGAAGUAGUCCUACAUUCGCGGUC	chr3:148847342-148847658(+)$1	316	75	106	12.1162
cucggcgggggcucggcgggggcucggcggg	chr21:46493674-46493970(+)$1	296	236	267	13.5020
CGCGUCUGUUCGCAGAGCUGUGGGCGGAGUU	chr3:38178319-38178688(-)$1	369	24	55	12.9981
CUGCAGCAGGAGCGUGGUUGCUCCGAGGCCA	chr19:5719784-5720053(-)$1	269	7	38	10.6676
GAGCCGGAGACCGCGGCGGCGGCGGCUGCUG	chr17:56160733-56161027(+)$1	294	182	213	10.5082
CGAUCCCAGGGGCCGCCAGCGCCCGAGGGCC	chr16:30621400-30621718(-)$1	318	281	312	10.7377
GGCGGCGGGGGCUCGGCGGGGUUCCUGGAGC	chr9:127533321-127533689(-)$1	368	327	358	12.6566
cggcgacggcgacuggcgggugggaguggag	chr6:53659727-53660074(+)$1	347	74	105	12.7009
GGCGCGUCGUGGUUGGCUGGCGAUGACCUCA	chr7:104653307-104653590(-)$1	283	13	44	12.6754
CGCGCCGGGCCGCUUGGAGGCGCCCGGUGCA	chr17:29151440-29151805(-)$1	365	65	96	12.3723
CCUCCUUGGAAGUCAGUCGUAGUCCUCGCAG	chr20:49574882-49575167(-)$1	285	111	142	12.8098
UAAAGGCGUGUGGCUCAGGCUGAGCGGCUGG	chr19:12902212-12902462(+)$1	250	58	89	13.4799
GCUGGGGACCGGCUUGGUGGCUUCGGGAAAC	chr1:184723808-184724084(-)$1	276	133	164	12.7863
CAAAGUGGUGGGACUCGCGUCGCGGCCGCGG	chr2:9770928-9771213(-)$1	285	103	134	13.8487
ACAAAGUGCGCCCCAUUUGGAUUCGUGCUUC	chr20:60627130-60627378(-)$1	248	20	51	14.0674
GCGGCGCGCACUAUAAAAUGGCGCGUGCUGC	chr19:51307726-51307952(-)$1	226	59	90	9.8993
AGGAAUUGUUGGAAAAUUUUCUCGGAGGUUC	chr11:9482556-9482813(+)$1	257	40	71	14.0667
CACCGCGAGCGCCGGCGUCGGGCUGGGGGUG	chr2:120189549-120189852(+)$1	303	37	68	12.7349
GAACCCCGAUCGCUGAGGAGCAAGGGGGCGC	chr12:72057362-72057631(-)$1	269	4	35	12.9742
gcgggguggccggggccgccggggcaugcag	chr6:148663875-148664189(+)$1	314	176	207	11.2249
GGGCUGCUCCUUAGGUCCCUGUUUGGCCCCU	chr10:82213977-82214249(+)$1	272	240	271	14.6914

#DB
(.(((((.((((((....)))))).))))).	chr17:7476136-7476368(+)$1	1	51	82	10.7841
((((..((...(((....)))..)).)))))	chr3:150320753-150321084(-)$1	1	280	311	13.4534
.....((((..(((....))).)))))))))	chr16:71323006-71323288(-)$1	1	96	127	12.4125
((((((((((..((....))...))))))..	chr6:692848-693199(-)$1	1	148	179	12.4379
).(((((.((((((....))).)))))))).	chr16:4421748-4421997(+)$1	1	151	182	11.8323
.(((.(((((.(((....)))..))))))))	chr2:38829751-38830030(-)$1	1	46	77	13.4579
(((.((((..((((....)))).)))).)))	chr2:176866834-176867096(-)$1	1	34	65	10.8790
(((((.(((.((((....)))))))...)))	chr16:89556785-89557067(-)$1	1	64	95	11.5389
((((.((((((.((....)).))))))))))	chr10:86088255-86088652(+)$1	1	14	45	11.1306
(((((.(((...((....))...))))))))	chr16:89882878-89883153(-)$1	1	165	196	13.4281
((((((..((((((....))).))).)))))	chr11:69461606-69461901(+)$1	1	249	280	13.5450
((((((((.(.(((....))).).)))))).	chr17:62223261-62223465(+)$1	1	65	96	13.2939
((.(((((((.(((....))).))))).)).	chr17:42402032-42402294(-)$1	1	5	36	12.4963
(.((((((.(((((....)).))))))...)	chr17:75303120-75303363(+)$1	1	99	130	12.7511
(((((((((.(.((....)).))))))))))	chr15:50978814-50979100(-)$1	1	150	181	13.0083
((..((((((((((....))))))).))).)	chr5:87564430-87564742(-)$1	1	205	236	11.6637
.((((((.((.(((....))).))))).)))	chr20:34252538-34252824(-)$1	1	61	92	13.1598
.((..(((((.(((....))))))))..)).	chr6:31926564-31926839(-)$1	1	111	142	11.5515
((..((((....((....))....))).)..	chr16:53088852-53089238(+)$1	1	58	89	13.0001
(((((((.(.((((....)))).))))).))	chr12:111180479-111180692(-)$1	1	126	157	10.0269
.((((((((((.((....)).))).))))))	chr20:47662829-47663061(+)$1	1	196	227	11.8905
((((..((((.(((....))))))).)))))	chr9:102861470-102861802(+)$1	1	102	133	13.0856
..(((((((..(((....)))......))))	chrX:55744102-55744407(+)$1	1	65	96	11.5227
(((((.(((.((((...)))).))).)))))	chr9:131790320-131790607(-)$1	1	188	219	9.6425
...(((((...(((....)))...)))))))	chr11:705000-705275(-)$1	1	13	44	13.7038
(((((((.((((((....))).))).)))))	chr8:144676323-144676558(-)$1	1	18	49	13.4375
(.((((.(((.(((....)))))))))).))	chr22:29279484-29279832(+)$1	1	176	207	12.9655
(((.((((((((((...)))))))))).)))	chr11:568252-568540(-)$1	1	237	268	11.2973
(((((..(((.(((....))).)))))))))	chr7:99679176-99679445(-)$1	1	71	102	13.8259
(((((((((.(.((....)).).))))))).	chr1:1821658-1821890(-)$1	1	51	82	10.3626
((((.((((.(.((....))).)))).))))	chr20:55926208-55926456(+)$1	1	7	38	11.8366
(((((.((((((((....)))..))))).))	chr10:105726868-105727150(+)$1	1	13	44	12.5506
(....(((((((((....)).))))))).))	chr13:111805934-111806176(+)$1	1	23	54	12.8530
.)))(((((((.(((...))))))))))(((	chr11:64660686-64661021(-)$1	1	129	160	10.1241
((((((((((.(((......)))))))))).	chr6:33239250-33239549(-)$1	1	225	256	10.6204
....((((((.(((....))).)))))))))	chr3:148847342-148847658(+)$1	1	75	106	12.1162
(((.((.(((.(((....))).))).)).))	chr21:46493674-46493970(+)$1	1	236	267	13.5020
((..((((((((((....))))))))))..)	chr3:38178319-38178688(-)$1	1	24	55	12.9981
((((..(.((((((....)))))))..).))	chr19:5719784-5720053(-)$1	1	7	38	10.6676
.(((((....((((....))))))))).)))	chr17:56160733-56161027(+)$1	1	182	213	10.5082
((..(((..(((((....).))))..))).)	chr16:30621400-30621718(-)$1	1	281	312	10.7377
(((..(((((((((....)))))))))..))	chr9:127533321-127533689(-)$1	1	327	358	12.6566
(..(.((..(.(((....))).)..)).)..	chr6:53659727-53660074(+)$1	1	74	105	12.7009
)))))(((((.(((....))).)))))(((.	chr7:104653307-104653590(-)$1	1	13	44	12.6754
((((((((((.(((....)))))))))))).	chr17:29151440-29151805(-)$1	1	65	96	12.3723
(((.(..(((...(....)...)))..).))	chr20:49574882-49575167(-)$1	1	111	142	12.8098
...((.(((..(((....)))..))).))..	chr19:12902212-12902462(+)$1	1	58	89	13.4799
((((....((((((....)))..)))....)	chr1:184723808-184724084(-)$1	1	133	164	12.7863
(...(((((.((((....))).).)))))..	chr2:9770928-9771213(-)$1	1	103	134	13.8487
.(.(((((((..((....))...))))))).	chr20:60627130-60627378(-)$1	1	20	51	14.0674
(((((((((.((((...)))).)))))))))	chr19:51307726-51307952(-)$1	1	59	90	9.8993
..(((((.((((((....))).))).)))))	chr11:9482556-9482813(+)$1	1	40	71	14.0667
((((.(.(((.(((....)))))).).))))	chr2:120189549-120189852(+)$1	1	37	68	12.7349
(..((((....(((....)))...))))..)	chr12:72057362-72057631(-)$1	1	4	35	12.9742
((((.(((.((.((....)).)).))).)..	chr6:148663875-148664189(+)$1	1	176	207	11.2249
(((..(((...(((....)))...)))))))	chr10:82213977-82214249(+)$1	1	240	271	14.6914

#PSSM
e : 0.14	f : 0.12	d : 0.12	c : 0.10	g : 0.08	b : 0.08	$ : 0.05	[ : 0.05	i : 0.05	! : 0.03	" : 0.03	: : 0.01	E : 0.01	n : 0.01	D : 0.01	# : 0.01	
e : 0.16	c : 0.14	f : 0.12	d : 0.10	g : 0.07	i : 0.07	[ : 0.05	$ : 0.05	" : 0.05	b : 0.03	# : 0.03	! : 0.03	: : 0.01	E : 0.01	a : 0.01	
e : 0.19	f : 0.14	c : 0.14	g : 0.10	! : 0.10	i : 0.07	d : 0.07	$ : 0.05	[ : 0.03	# : 0.03	b : 0.01	" : 0.01	
e : 0.16	f : 0.14	g : 0.12	! : 0.12	d : 0.08	c : 0.07	[ : 0.07	i : 0.05	a : 0.05	$ : 0.03	b : 0.03	# : 0.01	" : 0.01	
f : 0.16	e : 0.14	! : 0.10	[ : 0.10	g : 0.10	d : 0.07	c : 0.07	b : 0.05	i : 0.05	a : 0.03	= : 0.03	# : 0.03	$ : 0.01	
e : 0.17	c : 0.12	g : 0.12	d : 0.10	f : 0.10	! : 0.08	[ : 0.08	i : 0.07	= : 0.03	b : 0.03	# : 0.01	a : 0.01	
c : 0.19	e : 0.17	g : 0.12	d : 0.10	f : 0.08	i : 0.07	! : 0.05	[ : 0.05	b : 0.03	= : 0.03	# : 0.03	a : 0.01	
c : 0.23	g : 0.14	[ : 0.12	e : 0.12	d : 0.07	f : 0.07	i : 0.07	! : 0.05	# : 0.05	= : 0.03	b : 0.01	
c : 0.26	g : 0.12	e : 0.10	f : 0.08	i : 0.07	" : 0.05	d : 0.05	! : 0.05	[ : 0.05	# : 0.05	= : 0.03	b : 0.01	a : 0.01	
c : 0.21	[ : 0.14	f : 0.08	e : 0.08	g : 0.08	" : 0.07	! : 0.07	# : 0.05	a : 0.03	b : 0.03	d : 0.03	= : 0.03	i : 0.03	
[ : 0.26	c : 0.12	d : 0.12	" : 0.08	! : 0.08	a : 0.07	f : 0.05	g : 0.05	# : 0.03	= : 0.03	e : 0.01	i : 0.01	b : 0.01	
c : 0.53	d : 0.12	[ : 0.12	f : 0.03	! : 0.03	" : 0.03	g : 0.03	= : 0.03	# : 0.01	i : 0.01	
c : 0.53	b : 0.21	d : 0.12	f : 0.03	= : 0.03	g : 0.01	i : 0.01	" : 0.01	
c : 0.53	b : 0.21	d : 0.10	f : 0.03	= : 0.03	a : 0.03	g : 0.01	i : 0.01	
m : 0.91	l : 0.05	c : 0.01	o : 0.01	
m : 0.91	l : 0.07	o : 0.01	
m : 0.91	l : 0.07	o : 0.01	
m : 0.91	d : 0.03	= : 0.01	l : 0.01	o : 0.01	
c : 0.51	b : 0.21	d : 0.10	f : 0.03	= : 0.03	a : 0.03	g : 0.01	o : 0.01	i : 0.01	
c : 0.51	b : 0.21	d : 0.10	f : 0.03	= : 0.03	g : 0.01	o : 0.01	] : 0.01	i : 0.01	3 : 0.01	
c : 0.53	d : 0.12	] : 0.12	3 : 0.07	f : 0.03	= : 0.03	g : 0.01	4 : 0.01	a : 0.01	i : 0.01	
] : 0.30	3 : 0.12	d : 0.10	2 : 0.08	c : 0.08	f : 0.05	g : 0.05	a : 0.03	= : 0.03	i : 0.03	e : 0.01	4 : 0.01	6 : 0.01	b : 0.01	
c : 0.24	3 : 0.10	2 : 0.08	f : 0.07	d : 0.07	e : 0.07	i : 0.07	] : 0.05	a : 0.05	g : 0.05	b : 0.03	= : 0.03	4 : 0.01	6 : 0.01	
c : 0.28	e : 0.10	g : 0.10	f : 0.08	d : 0.08	i : 0.07	] : 0.05	3 : 0.05	b : 0.03	= : 0.03	4 : 0.01	a : 0.01	6 : 0.01	2 : 0.01	
c : 0.30	e : 0.14	d : 0.12	g : 0.10	f : 0.07	i : 0.07	] : 0.05	= : 0.03	2 : 0.03	b : 0.01	6 : 0.01	a : 0.01	
e : 0.17	] : 0.14	c : 0.14	d : 0.10	g : 0.10	f : 0.08	i : 0.07	2 : 0.05	= : 0.03	3 : 0.01	6 : 0.01	b : 0.01	a : 0.01	
e : 0.23	g : 0.14	f : 0.12	c : 0.12	d : 0.07	i : 0.07	2 : 0.05	] : 0.05	= : 0.03	b : 0.03	3 : 0.01	6 : 0.01	4 : 0.01	
e : 0.23	g : 0.16	] : 0.14	f : 0.10	d : 0.07	i : 0.05	c : 0.05	3 : 0.03	2 : 0.03	b : 0.03	a : 0.03	= : 0.01	4 : 0.01	
e : 0.19	g : 0.12	f : 0.12	c : 0.12	] : 0.12	b : 0.05	i : 0.05	a : 0.05	2 : 0.05	d : 0.03	3 : 0.01	h : 0.01	4 : 0.01	
e : 0.19	g : 0.16	c : 0.14	f : 0.12	2 : 0.08	3 : 0.07	i : 0.05	d : 0.05	b : 0.03	] : 0.03	h : 0.01	4 : 0.01	
e : 0.17	c : 0.14	g : 0.10	f : 0.10	d : 0.08	] : 0.07	2 : 0.07	3 : 0.05	: : 0.05	i : 0.03	b : 0.03	4 : 0.01	h : 0.01	! : 0.01	

#score	689.0914220641372
#seq	56
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_UTR_m2_run1.txt

#BEAR
dddd"""gggggggnnnnnggggggg]dddd]f	chr2:20550275-20550540(-)$1	265	133	166	14.4274
eeeee[ccc"""bbnnnnnbb]ccc22eeeeeH	chr17:40852883-40853177(-)$1	294	147	180	13.5271
####dddd[a"""bbnnnnnbb333a]dddd44	chr11:6504146-6504459(+)$1	313	182	215	13.1870
fffffffffffcccooooooccc333ffffff]	chr19:1416408-1416692(+)$1	284	124	157	11.4155
fff[a!!ccc[cccnnnnncccccca]ffffff	chr11:295386-295650(+)$1	264	42	75	16.7401
cc!!eeeee[ddddnnnnndddd]eeeee333c	chr16:85646881-85647134(+)$1	253	140	173	13.2479
$dddd[ccc!!cccnnnnnccc22ccc]dddd4	chr16:89663178-89663450(+)$1	272	65	98	15.9581
f[ccc!!ccc!!bboooooobb]ccc]cccfff	chr21:47721047-47721331(-)$1	284	209	242	12.6018
###===========nnnnn===========22b	chr11:18425199-18425454(+)$1	255	147	180	15.4575
!bb[ccc!!eeeeennnnneeeee22ccc]bb]	chr19:10222193-10222511(+)$1	318	12	45	12.6067
#eeeee[ccc[cccnnnnnccc]ccc333eeee	chr8:124220481-124220780(+)$1	299	20	53	15.8595
ccc####dddd!!annnnna22ddddccc]ccc	chr3:14988972-14989280(-)$1	308	237	270	14.1105
ddd[bbdddd[cccnnnnnccc]dddd]bb]dd	chr1:228270954-228271281(+)$1	327	95	128	13.5352
eeeeeeeeccccccnnnnnccc]cccccc[ggg	chr12:109124803-109125153(-)$1	350	244	277	14.7728
cccc[iiiiiiiiinnnnniiiiiiiii]ccc]	chr11:404640-404960(+)$1	320	27	60	15.4295
fffff[bb"""cccnnnnnccc333bb]fffff	chr1:150532724-150532997(+)$1	273	72	105	15.4289
ff$$$$$ccc[cccoooooocccccc333ffff	chr11:47493147-47493421(-)$1	274	156	189	12.4245
####ccca[ccc[annnnna]ccc]a]ccceee	chr3:9876764-9877116(+)$1	352	155	188	15.4188
cc!!a####eeeeennnnneeeee333a22ccc	chr7:2147124-2147444(-)$1	320	261	294	13.8782
ggggggg####cccnnnnnccc333ggggggg:	chr6:33171678-33172039(+)$1	361	233	266	15.6107
ccc[ffffff[cccnnnnncccffffff]cccF	chr7:151216370-151216699(-)$1	329	283	316	14.5823
ff[a[dddd"""bbnnnnnbb333dddd]afff	chr3:197024714-197025086(-)$1	372	58	91	14.7603
!!bb[iiiiiiiiinnnnniiiiiiiii]bbff	chr16:1413478-1413809(-)$1	331	56	89	14.5770
ccc####ccc[bb[annnnna]bb]ccc]ccce	chr17:54968703-54969020(-)$1	317	130	163	13.4880
eee!!ffffffcccooooooccc333ffffff]	chr3:9861217-9861550(+)$1	333	209	242	11.8643
iiccc[ccc!!cccnnnnnccc22ccc]cccCC	chr17:80871474-80871735(+)$1	261	135	168	14.7709
ddd[ccc!!ccc[annnnna]cccccc]ddddb	chr1:153615710-153615928(+)$1	218	34	67	14.6017
ffff"""ccc[bbnnnnnbb]ccc333ffffff	chr2:172379422-172379700(+)$1	278	120	153	13.0514
ffff"""eeeee[aooooooa]eeeeeffffff	chr9:94711058-94711378(-)$1	320	70	103	10.1678
dddd[ggggggg[annnnna]ggggggg]dddd	chr17:76794067-76794362(-)$1	295	216	249	14.0949
b"""a[dddd[ddddnnnnndddd]dddd]a33	chr15:65477486-65477771(-)$1	285	14	47	12.0357
gggggggddddcccnnnnnccc]dddd]ggggg	chr1:2326084-2326381(+)$1	297	121	154	14.6996
b"""ddddccc[bbnnnnnbb22ccc]dddd44	chr13:114144504-114144848(-)$1	344	146	179	14.4028
[dddd[ddddddddnnnnndddd]ddddddddd	chr3:128209062-128209337(+)$1	275	29	62	12.3944
[dddd!!ccc!!bboooooobb]ccc]dddd]d	chr22:19431304-19431642(-)$1	338	84	117	11.7690
hhhh!!ccc!!cccoooooocccccc]hhhhhh	chr8:101962970-101963292(-)$1	322	154	187	11.2196
!!ffffff"""cccnnnnnccc333ffffff22	chr6:86322450-86322733(-)$1	283	13	46	15.7394
####ddddccccccnnnnnccc]ccc]dddd66	chr3:128209200-128209443(+)$1	243	32	65	14.9639
=======[ccc[bbnnnnnbb22ccc]======	chr1:36180651-36180963(-)$1	312	26	59	15.6867
b[a[ffffff!!bbnnnnnbb]ffffffa]bb]	chr19:1883617-1883889(-)$1	272	137	170	13.3759
gggg!!ccc[ddddnnnnnddddccc]gggggg	chr8:102217043-102217425(-)$1	382	12	45	15.0396
fff[eeeee[a[bbnnnnnbba]eeeeefffff	chr19:41770606-41770872(+)$1	266	41	74	13.6029
bb[ffffff!!cccnnnnnccc22ffffffbb6	chr16:89663327-89663600(+)$1	273	49	82	14.0907
fffff[ccc"""bbnnnnnbb333ccc]fffff	chr14:21967336-21967660(-)$1	324	145	178	15.9107
ddd[a[eeeeecccnnnnnccc22eeeeea]dd	chr19:2426298-2426564(-)$1	266	161	194	14.3409
iiiiiiiii!!cccnnnnnccc666666iiiii	chr20:60884310-60884624(-)$1	314	103	136	13.6152
==========[cccnnnnnccc==========c	chr5:138630257-138630515(+)$1	258	50	83	16.8740
'''===========nnnnn===========444	chr20:57467325-57467596(+)$1	271	145	178	14.4560
dddbb[ccceeeeennnnneeeee]ccc]bb]d	chr20:1165127-1165394(-)$1	267	169	202	12.6612
cc[bb!!gggggggnnnnnggggggg]bb]ccc	chr5:139045243-139045539(+)$1	296	201	234	14.2812
###ccc[cccddddnnnnndddd22ccc]ccc4	chr6:31639666-31639996(+)$1	330	161	194	14.7510
ddd####a[a[cccnnnnnccca]a333dddd]	chr8:144675905-144676176(-)$1	271	206	239	16.1990
!a[ccc[cccddddnnnnndddd333ccc]ccc	chr19:2270332-2270569(+)$1	237	94	127	15.1364

#otherMatches

#Seq PSSM
UGCCCAACGGUCGGUGUCCCCGGCUGAGGCAGC	chr2:20550275-20550540(-)$1	265	133	166	14.4274
GGGAGUGUUACAGUAGGGAGCAGGCUUCUCCCU	chr17:40852883-40853177(-)$1	294	147	180	13.5271
GAGAGCUGGGGACCAUAUUCUGCAAUGCAGCCA	chr11:6504146-6504459(+)$1	313	182	215	13.1870
ACAUCUAAGGCCCCGUGCCUGGGUAAGCCUUGU	chr19:1416408-1416692(+)$1	284	124	157	11.4155
GAGGGAUUUGAGGGCGAGACCCCAGCGCUCUCC	chr11:295386-295650(+)$1	264	42	75	16.7401
GGCCGGGGACGGGGUCCUCCCCCCUCCCCCCAC	chr16:85646881-85647134(+)$1	253	140	173	13.2479
GCCCUGCCUGAGCCAGGUGGGUGGAGGGAGGGA	chr16:89663178-89663450(+)$1	272	65	98	15.9581
gauggaaccacugcacuauagccuggaccacag	chr21:47721047-47721331(-)$1	284	209	242	12.6018
GGUGGUUGAGAGGUAAUAAAUCUUUCAAUUUGG	chr11:18425199-18425454(+)$1	255	147	180	15.4575
AUGAGCUUGAACCUCAGGAGGGUUGUGGCACAA	chr19:10222193-10222511(+)$1	318	12	45	12.6067
GCCCCAGAACCCGUUAUCUAUGAGUUGUAUGGG	chr8:124220481-124220780(+)$1	299	20	53	15.8595
gcgAGAACGCGAUUGGCUGAGGCGCGCGCGCGC	chr3:14988972-14989280(-)$1	308	237	270	14.1105
UCCAGUUCGUGUUUGCUGUGAAGACGGUACCGG	chr1:228270954-228271281(+)$1	327	95	128	13.5352
GCUCCUGGCCGGGUGCGGAGCCGCGGGCCGAGG	chr12:109124803-109125153(-)$1	350	244	277	14.7728
GACGGAGGGGCCCCUCGCUGGGGCCCCUGUGUG	chr11:404640-404960(+)$1	320	27	60	15.4295
AGGGUGGCAAGGUGACUGACACAAAGUGACUUU	chr1:150532724-150532997(+)$1	273	72	105	15.4289
GGAAGAGUGGAGUGACUAGACACCUAAUGCCCU	chr11:47493147-47493421(-)$1	274	156	189	12.4245
CUGAGGCCUGCCCCAUGAAGAGGCUGAGCCCCC	chr3:9876764-9877116(+)$1	352	155	188	15.4188
AGCAUGAUUGCAGCGGGCAGCUGUUGAAGACUG	chr7:2147124-2147444(-)$1	320	261	294	13.8782
GGAGAACCAAGUUGCUACACAGGAAGUUCUCCA	chr6:33171678-33172039(+)$1	361	233	266	15.6107
CGUAACCACCAUUCUGAGCGGAGGUGGUGGCGG	chr7:151216370-151216699(-)$1	329	283	316	14.5823
UCACGUGGGAGCGCGGCAGGCCAGCUCGGGGGC	chr3:197024714-197025086(-)$1	372	58	91	14.7603
CAAGAUCCUGGGGCUGUGUGCCCUGGGGCCUCC	chr16:1413478-1413809(-)$1	331	56	89	14.5770
GAGUGAUUGUGUUGUGGGCGAGGAGGCGUUUCC	chr17:54968703-54969020(-)$1	317	130	163	13.4880
CUCCAGGAAGGAGGAAAAUCCCUGCCUCUUCCA	chr3:9861217-9861550(+)$1	333	209	242	11.8643
GCCACAUUGAUGUCCCCCAGGCUCCAGAGUGAC	chr17:80871474-80871735(+)$1	261	135	168	14.7709
UGGGCUUAAGAAGAGGUGGUGUUCGAGGUCGUG	chr1:153615710-153615928(+)$1	218	34	67	14.6017
CUUUGCGGCGACUGGCUAGGACGCACUGGAGGG	chr2:172379422-172379700(+)$1	278	120	153	13.0514
GCGCGGUUUCGGCUGCUUGGAUCCGGGGCGCAG	chr9:94711058-94711378(-)$1	320	70	103	10.1678
GUGUGGGAUGUGGGUUGUGUGUAUAUCUGGCAU	chr17:76794067-76794362(-)$1	295	216	249	14.0949
CAAGCUCCCCGGGCCCAGUAGGCUggggguggg	chr15:65477486-65477771(-)$1	285	14	47	12.0357
cuccucacugcCCUGCCGAGGGAGCAGAUGGGG	chr1:2326084-2326381(+)$1	297	121	154	14.6996
CAGGGGCCGGGGCCGAGCGGGAACCCAGGCCGG	chr13:114144504-114144848(-)$1	344	146	179	14.4028
GUGCUGCCGCCUGCCUGACGCAGAGCGGAGCGA	chr3:128209062-128209337(+)$1	275	29	62	12.3944
CCAGGAGGCCAAGCAUUAUGGCAGGUACUUGUG	chr22:19431304-19431642(-)$1	338	84	117	11.7690
GGGUGAGCCUGAGCAUAGCCGCUGGUGGCCCGC	chr8:101962970-101963292(-)$1	322	154	187	11.2196
UUUAAUGUUAUCAUUAUGUAUGUACACAUUAUU	chr6:86322450-86322733(-)$1	283	13	46	15.7394
AGCCUCCUUGCCCGCAAUCCGGUGUAGAGGAAA	chr3:128209200-128209443(+)$1	243	32	65	14.9639
AUGUGUAGACAGGUACCCAGCAGUGUGUGUAUA	chr1:36180651-36180963(-)$1	312	26	59	15.6867
ugaucagcaaggagggaggcuguugcuguggcu	chr19:1883617-1883889(-)$1	272	137	170	13.3759
CCGGUCAGCUGCCAGAGUGUGGCGCUCCCGGUG	chr8:102217043-102217425(-)$1	382	12	45	15.0396
GCCCGGGCUGCAGCCGCACGCGGAGCCCGGCGG	chr19:41770606-41770872(+)$1	266	41	74	13.6029
UGUGGGGGAGGGCCAGCAAGGCAGUCCCCCCAC	chr16:89663327-89663600(+)$1	273	49	82	14.0907
GUUGGUGUCAAAGGAAAUCCCCAAGGCUUCAAC	chr14:21967336-21967660(-)$1	324	145	178	15.9107
CUGCCACCCCUGCCCCAAAGGCUAAGGGGGACA	chr19:2426298-2426564(-)$1	266	161	194	14.3409
CGUGCAGCCCUGGCCCCCCGCCUACUGCGGCUG	chr20:60884310-60884624(-)$1	314	103	136	13.6152
GGGUGAUUUGCACUUGUUUAGUCAAGUCACCUC	chr5:138630257-138630515(+)$1	258	50	83	16.8740
GGGCCUCGCCAAAGGGAGGCUUUGGCGGGGAGA	chr20:57467325-57467596(+)$1	271	145	178	14.4560
GAUCCGAGGGUCACACUACGUGACUUCUGGGUG	chr20:1165127-1165394(-)$1	267	169	202	12.6612
CUGGGAAGGGUUUGUUGACCAGACCUGCUGAGG	chr5:139045243-139045539(+)$1	296	201	234	14.2812
CCUGCCUCUGUCUGACUCCCAGAUUCAGUGGUU	chr6:31639666-31639996(+)$1	330	161	194	14.7510
CUGUCCUGGGAGGCUCUCUGCCCGCUGUUAGUG	chr8:144675905-144676176(-)$1	271	206	239	16.1990
UGAGCGAGUCGGUCUGGAUGGCCCGGGACGCGC	chr19:2270332-2270569(+)$1	237	94	127	15.1364

#DB
((((...(((((((.....))))))).)))).)	chr2:20550275-20550540(-)$1	1	133	166	14.4274
(((((.(((...((.....)).)))..))))))	chr17:40852883-40853177(-)$1	1	147	180	13.5271
....((((.(...((.....))...).))))..	chr11:6504146-6504459(+)$1	1	182	215	13.1870
((((((((((((((......)))...)))))).	chr19:1416408-1416692(+)$1	1	124	157	11.4155
(((.(..(((.(((.....))))))).))))))	chr11:295386-295650(+)$1	1	42	75	16.7401
((..(((((.((((.....)))).)))))...)	chr16:85646881-85647134(+)$1	1	140	173	13.2479
.((((.(((..(((.....)))..))).)))).	chr16:89663178-89663450(+)$1	1	65	98	15.9581
(.(((..(((..((......)).))).))))))	chr21:47721047-47721331(-)$1	1	209	242	12.6018
...(((((((((((.....)))))))))))..)	chr11:18425199-18425454(+)$1	1	147	180	15.4575
.((.(((..(((((.....)))))..))).)).	chr19:10222193-10222511(+)$1	1	12	45	12.6067
.(((((.(((.(((.....))).)))...))))	chr8:124220481-124220780(+)$1	1	20	53	15.8595
(((....((((..(.....)..))))))).)))	chr3:14988972-14989280(-)$1	1	237	270	14.1105
(((.((((((.(((.....))).)))).)).))	chr1:228270954-228271281(+)$1	1	95	128	13.5352
))))))))((((((.....))).)))(((.(((	chr12:109124803-109125153(-)$1	1	244	277	14.7728
((((.(((((((((.....))))))))).))).	chr11:404640-404960(+)$1	1	27	60	15.4295
(((((.((...(((.....)))...)).)))))	chr1:150532724-150532997(+)$1	1	72	105	15.4289
((.....(((.(((......))))))...))))	chr11:47493147-47493421(-)$1	1	156	189	12.4245
....((((.(((.(.....).))).).))))))	chr3:9876764-9877116(+)$1	1	155	188	15.4188
((..(....(((((.....)))))...)..)))	chr7:2147124-2147444(-)$1	1	261	294	13.8782
(((((((....(((.....)))...))))))).	chr6:33171678-33172039(+)$1	1	233	266	15.6107
(((.((((((.(((.....))))))))).))))	chr7:151216370-151216699(-)$1	1	283	316	14.5823
((.(.((((...((.....))...)))).))))	chr3:197024714-197025086(-)$1	1	58	91	14.7603
..((.(((((((((.....))))))))).))))	chr16:1413478-1413809(-)$1	1	56	89	14.5770
(((....(((.((.(.....).)).))).))))	chr17:54968703-54969020(-)$1	1	130	163	13.4880
(((..(((((((((......)))...)))))).	chr3:9861217-9861550(+)$1	1	209	242	11.8643
))(((.(((..(((.....)))..))).)))))	chr17:80871474-80871735(+)$1	1	135	168	14.7709
(((.(((..(((.(.....).)))))).)))))	chr1:153615710-153615928(+)$1	1	34	67	14.6017
((((...(((.((.....)).)))...))))))	chr2:172379422-172379700(+)$1	1	120	153	13.0514
((((...(((((.(......).)))))))))))	chr9:94711058-94711378(-)$1	1	70	103	10.1678
((((.(((((((.(.....).))))))).))))	chr17:76794067-76794362(-)$1	1	216	249	14.0949
(...(.((((.((((.....)))).)))).)..	chr15:65477486-65477771(-)$1	1	14	47	12.0357
((((((((((((((.....))).)))).)))))	chr1:2326084-2326381(+)$1	1	121	154	14.6996
(...(((((((.((.....))..))).))))..	chr13:114144504-114144848(-)$1	1	146	179	14.4028
.((((.((((((((.....)))).)))))))))	chr3:128209062-128209337(+)$1	1	29	62	12.3944
.((((..(((..((......)).))).)))).)	chr22:19431304-19431642(-)$1	1	84	117	11.7690
((((..(((..(((......)))))).))))))	chr8:101962970-101963292(-)$1	1	154	187	11.2196
..((((((...(((.....)))...))))))..	chr6:86322450-86322733(-)$1	1	13	46	15.7394
....((((((((((.....))).))).))))..	chr3:128209200-128209443(+)$1	1	32	65	14.9639
(((((((.(((.((.....))..))).))))))	chr1:36180651-36180963(-)$1	1	26	59	15.6867
(.(.((((((..((.....)).))))))).)).	chr19:1883617-1883889(-)$1	1	137	170	13.3759
((((..(((.((((.....))))))).))))))	chr8:102217043-102217425(-)$1	1	12	45	15.0396
(((.(((((.(.((.....))).))))))))))	chr19:41770606-41770872(+)$1	1	41	74	13.6029
((.((((((..(((.....)))..)))))))).	chr16:89663327-89663600(+)$1	1	49	82	14.0907
(((((.(((...((.....))...))).)))))	chr14:21967336-21967660(-)$1	1	145	178	15.9107
(((.(.((((((((.....)))..)))))).))	chr19:2426298-2426564(-)$1	1	161	194	14.3409
(((((((((..(((.....)))......)))))	chr20:60884310-60884624(-)$1	1	103	136	13.6152
((((((((((.(((.....)))))))))))))(	chr5:138630257-138630515(+)$1	1	50	83	16.8740
...(((((((((((.....)))))))))))...	chr20:57467325-57467596(+)$1	1	145	178	14.4560
(((((.((((((((.....))))).))).)).)	chr20:1165127-1165394(-)$1	1	169	202	12.6612
((.((..(((((((.....))))))).)).)))	chr5:139045243-139045539(+)$1	1	201	234	14.2812
...(((.(((((((.....))))..))).))).	chr6:31639666-31639996(+)$1	1	161	194	14.7510
(((....(.(.(((.....)))).)...)))).	chr8:144675905-144676176(-)$1	1	206	239	16.1990
.(.(((.(((((((.....))))...))).)))	chr19:2270332-2270569(+)$1	1	94	127	15.1364

#PSSM
f : 0.18	d : 0.13	c : 0.13	# : 0.11	! : 0.07	b : 0.07	e : 0.05	g : 0.05	i : 0.03	[ : 0.03	= : 0.03	$ : 0.01	h : 0.01	' : 0.01	
d : 0.18	f : 0.16	c : 0.13	# : 0.09	e : 0.07	g : 0.05	[ : 0.03	b : 0.03	! : 0.03	i : 0.03	" : 0.03	= : 0.03	h : 0.01	' : 0.01	a : 0.01	
d : 0.18	f : 0.15	c : 0.11	# : 0.09	e : 0.07	[ : 0.07	g : 0.05	! : 0.03	b : 0.03	" : 0.03	= : 0.03	$ : 0.01	h : 0.01	a : 0.01	i : 0.01	' : 0.01	
[ : 0.15	f : 0.13	# : 0.11	d : 0.09	c : 0.09	= : 0.07	e : 0.05	! : 0.05	g : 0.05	b : 0.05	" : 0.03	$ : 0.01	a : 0.01	h : 0.01	i : 0.01	
f : 0.13	c : 0.13	d : 0.11	e : 0.09	a : 0.07	= : 0.07	[ : 0.07	" : 0.05	# : 0.05	b : 0.05	! : 0.05	g : 0.03	$ : 0.01	i : 0.01	
[ : 0.16	f : 0.11	! : 0.11	c : 0.09	d : 0.07	e : 0.07	= : 0.07	# : 0.07	" : 0.05	i : 0.05	g : 0.05	b : 0.01	$ : 0.01	
c : 0.18	d : 0.13	f : 0.11	! : 0.07	e : 0.07	= : 0.07	# : 0.07	" : 0.05	[ : 0.05	i : 0.05	g : 0.05	b : 0.01	$ : 0.01	
c : 0.30	d : 0.16	f : 0.11	e : 0.09	g : 0.05	= : 0.05	i : 0.05	! : 0.03	a : 0.03	# : 0.03	b : 0.01	[ : 0.01	
c : 0.37	d : 0.11	f : 0.09	e : 0.07	g : 0.05	[ : 0.05	= : 0.05	i : 0.05	! : 0.03	" : 0.03	# : 0.03	
c : 0.28	" : 0.09	! : 0.09	e : 0.09	d : 0.09	f : 0.07	g : 0.05	[ : 0.05	= : 0.05	a : 0.03	i : 0.03	# : 0.01	
[ : 0.18	! : 0.15	d : 0.13	" : 0.11	c : 0.11	e : 0.09	g : 0.05	f : 0.03	= : 0.03	i : 0.03	# : 0.01	a : 0.01	
c : 0.43	d : 0.11	" : 0.07	! : 0.07	e : 0.07	g : 0.05	[ : 0.05	= : 0.03	i : 0.03	b : 0.03	
c : 0.39	b : 0.20	d : 0.11	[ : 0.07	e : 0.05	g : 0.03	= : 0.03	i : 0.03	" : 0.01	! : 0.01	
c : 0.39	b : 0.18	d : 0.11	a : 0.09	e : 0.05	g : 0.03	= : 0.03	i : 0.03	[ : 0.01	n : 0.01	
n : 0.81	o : 0.13	b : 0.01	a : 0.01	d : 0.01	
n : 0.86	o : 0.13	
n : 0.86	o : 0.13	
n : 0.86	o : 0.13	
n : 0.84	o : 0.13	b : 0.01	
c : 0.32	b : 0.15	o : 0.13	d : 0.09	a : 0.07	n : 0.05	e : 0.05	g : 0.03	= : 0.03	i : 0.03	
c : 0.39	b : 0.18	d : 0.11	] : 0.07	e : 0.05	g : 0.03	= : 0.03	i : 0.03	a : 0.03	2 : 0.01	
c : 0.45	d : 0.11	] : 0.07	g : 0.05	b : 0.05	e : 0.05	2 : 0.05	= : 0.03	i : 0.03	3 : 0.03	a : 0.01	
c : 0.16	] : 0.15	d : 0.13	3 : 0.11	2 : 0.11	e : 0.07	g : 0.05	= : 0.05	i : 0.03	f : 0.03	b : 0.01	6 : 0.01	a : 0.01	
c : 0.28	3 : 0.16	2 : 0.09	e : 0.09	d : 0.07	g : 0.05	] : 0.05	= : 0.05	i : 0.03	f : 0.03	b : 0.01	6 : 0.01	
c : 0.30	3 : 0.16	d : 0.09	e : 0.07	] : 0.07	g : 0.05	= : 0.05	f : 0.05	2 : 0.03	i : 0.03	6 : 0.01	a : 0.01	
c : 0.32	3 : 0.11	d : 0.11	g : 0.07	e : 0.07	f : 0.07	a : 0.05	= : 0.05	2 : 0.03	i : 0.03	b : 0.01	6 : 0.01	
] : 0.22	c : 0.20	f : 0.11	3 : 0.09	d : 0.09	e : 0.07	= : 0.05	i : 0.03	g : 0.03	2 : 0.01	b : 0.01	6 : 0.01	
f : 0.16	c : 0.16	d : 0.15	] : 0.13	e : 0.07	= : 0.07	3 : 0.05	g : 0.05	i : 0.03	a : 0.01	h : 0.01	6 : 0.01	b : 0.01	
d : 0.18	f : 0.18	] : 0.15	c : 0.13	= : 0.07	e : 0.05	g : 0.05	3 : 0.03	b : 0.03	2 : 0.01	h : 0.01	a : 0.01	i : 0.01	
f : 0.20	d : 0.18	c : 0.13	] : 0.11	= : 0.07	b : 0.05	g : 0.05	e : 0.03	a : 0.03	3 : 0.01	[ : 0.01	2 : 0.01	h : 0.01	i : 0.01	
f : 0.22	d : 0.18	c : 0.16	b : 0.09	g : 0.07	e : 0.05	] : 0.03	= : 0.03	3 : 0.01	2 : 0.01	a : 0.01	h : 0.01	i : 0.01	4 : 0.01	
f : 0.22	c : 0.15	d : 0.13	g : 0.07	] : 0.05	e : 0.05	4 : 0.05	b : 0.05	3 : 0.03	2 : 0.03	= : 0.03	C : 0.01	h : 0.01	6 : 0.01	i : 0.01	
f : 0.20	] : 0.11	c : 0.11	d : 0.11	4 : 0.09	e : 0.05	g : 0.05	b : 0.03	6 : 0.03	H : 0.01	: : 0.01	F : 0.01	C : 0.01	3 : 0.01	h : 0.01	2 : 0.01	= : 0.01	i : 0.01	

#score	748.8445365280451
#seq	53
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_CDS_m3_run1.txt

#BEAR
33==========ggggggg[eeeee####g	chr19:1012203-1012500(-)$1	297	164	194	10.6308
eeee[eeeee"""dddd"""ccc[a[gggg	chr3:99567538-99567834(+)$1	296	45	75	10.8500
eeee[a[dddd[ccca[a[a[eeeee[fff	chr7:129710288-129710649(+)$1	361	273	303	9.8986
ffffffffffff[a[bb"""ccc[bb[aad	chr7:104752850-104753137(-)$1	287	64	94	9.3465
iiiiiiiii$$$$$ccc!!a[bb!!ccc[d	chr9:140446425-140446710(+)$1	285	148	178	9.1541
ee[a!!==========="""ccc[ddddee	chr16:2301213-2301457(-)$1	244	158	188	11.4681
eeee"""ccc"""ccc[bb[eeeee[a[bb	chr5:86564312-86564635(+)$1	323	96	126	10.2906
eeeeiiiiiiiii[==========ccc!!b	chr17:1552925-1553197(-)$1	272	115	145	10.6336
b!!bb[ddddiiiiiiiii!!dddd!!ddd	chr9:139357280-139357577(-)$1	297	130	160	8.5258
=a]hhhhhhhhffffff"""dddd[bb[dd	chr17:29632339-29632585(+)$1	246	158	188	8.8244
eeeee[bb[dddd[ccc[a[eeeee!!amm	chr19:8550849-8551139(+)$1	290	46	76	9.3699
[eeeee[a[ccc!!ccc####ccc[fffff	chr5:137089641-137089900(-)$1	259	90	120	11.1920
fffff!!hhhhhhhh!!bb[eeeeebb!!f	chr8:145149985-145150240(+)$1	255	151	181	8.4281
eeee!!gggggggffffff[ccc!!ddddv	chr17:80866136-80866390(+)$1	254	181	211	8.6945
bgggggggeeeee[ccc"""bblllbb]cc	chr17:74261444-74261704(+)$1	260	203	233	8.7331
#iiiiiiiii[eeeee"""dddd!!bbccc	chr6:170123880-170124234(-)$1	354	83	113	9.8690
!bb"""eeeee[ccc[a"""eeeeebbnnn	chr9:131418761-131419066(-)$1	305	72	102	8.6591
hhhhhhh!!ccc[dddd"""dddd[cccww	chr19:18418202-18418465(-)$1	263	166	196	9.3095
gggggg:ffffff[bb####dddd[bb[hh	chr7:72721546-72721834(-)$1	288	102	132	8.7338
b!!eeeeeffffff[ccc[eeeee####gg	chr6:32940773-32941013(+)$1	240	130	160	8.4990
gggggg[dddda!!ccc"""ccchhhhhhh	chr6:32940765-32940973(+)$1	208	78	108	10.1274
eeee[bb[ggggggg[bb"""dddd!!ccc	chr7:923731-923943(+)$1	212	17	47	11.0828
eeee[ggggggg!!ccc"""eeeeebbccc	chr1:155300133-155300396(+)$1	263	35	65	13.4124
eeee[ffffff[ffffff!!eeeee[bbll	chr2:74691996-74692401(-)$1	405	203	233	9.1040
gggggg[dddda!!ccc"""ccchhhhhhh	chr6:32940754-32940965(+)$1	211	89	119	10.1274
dddgggggggggggggg####cccbb[ccc	chr16:777314-777622(+)$1	308	179	209	10.8739
##==========!!dddd####ddddcccp	chr12:123373017-123373294(-)$1	277	60	90	9.3260
eeee[eeeeeeeeeedddd[eeeee[gggg	chr9:101867464-101867740(+)$1	276	148	178	8.7465
[=============!!bb"""eeeee"""c	chr17:29622717-29623003(+)$1	286	131	161	11.6868
:ccc[cccggggggg[a!!eeeee[fffff	chr3:99567154-99567412(+)$1	258	9	39	8.8757
[eeeee####iiiiiiiii[eeeee[ccc'	chr2:201728827-201729098(-)$1	271	32	62	10.1325
ddddggggggg####dddd[eeeee!!ddd	chr1:87379610-87379897(-)$1	287	25	55	8.9952
eeeccc"""ggggggg####eeeee####d	chr7:150649802-150650042(-)$1	240	64	94	12.1275
fff!!ccc!!ggggggg"""bblllbb333	chr20:42295702-42296047(+)$1	345	243	273	8.5905
ddd$$$$$iiiiiiiii"""eeeee[bb^^	chr16:88717258-88717512(-)$1	254	182	212	10.4281
ffff!!ggggggg[ccc!!a!!ccc"""bb	chr7:104752719-104752984(-)$1	265	26	56	10.8648
GGggggggg[cccccc[bb!!ccc[bb[cc	chr7:156432572-156432889(-)$1	317	13	43	8.7568
eeee[a[dddd!!dddd[ggggggg[dddd	chr16:841744-842018(+)$1	274	51	81	8.5913
d[dddd####bb[ccc####ffffffdddd	chr7:6071033-6071337(-)$1	304	187	217	8.3180
Heeeee[ccc####ccc!!a[a[ffffffn	chr8:94752561-94752871(-)$1	310	198	228	8.5735
GGeeeee[a[ffffff####ffffff[ccc	chr2:97482430-97482743(+)$1	313	8	38	8.7405
dd!!ffffffhhhhhhhh!!eeeee!!ccc	chr7:923755-924006(+)$1	251	28	58	8.9319
ffff[ccc[============[ggggggg[	chr17:29622238-29622497(+)$1	259	145	175	9.5238
22ffffffeeeeedddd"""eeeeeccc[a	chr2:10583304-10583535(-)$1	231	69	99	9.1799
iiiiiiiiiffffffbb"""dddd[ccc[b	chr20:30947379-30947703(+)$1	324	90	120	10.3023
gggggg!!a!!iiiiiiiiieeeee[ccc!	chr7:6075705-6075949(-)$1	244	41	71	10.7456
eeee===========[bb!!ccc[ffffff	chr12:121125066-121125367(+)$1	301	14	44	10.4198
:eeeeeeeeee"""ccc"""ddddbbbbcc	chr20:5986972-5987288(+)$1	316	211	241	9.8090
eee[a[hhhhhhhhdddd!!eeeee[a"""	chr21:45432186-45432494(+)$1	308	163	193	9.5728
eeeee####dddd[ccc!!dddd$$$$$cc	chr6:31371352-31371637(+)$1	285	59	89	8.9511
eeeee[ffffff!!ccc[ccc!!dddd[dd	chr7:6075004-6075252(-)$1	248	102	132	8.8218
ff[bb[a[dddd!!ccc"""ccclllccc]	chr2:11484151-11484474(-)$1	323	67	97	9.0764
hhhh!!ccc[ggggggg"""eeeee"""dd	chr19:8550805-8551049(+)$1	244	5	35	11.7737

#otherMatches

#Seq PSSM
ACGCUUCCCAGGGCUGGGGUCCUGGAUGGG	chr19:1012203-1012500(-)$1	297	164	194	10.6308
GCCAUGGUAAUUGGGGACAUGCCUUGUUCU	chr3:99567538-99567834(+)$1	296	45	75	10.8500
gccggcgggggcagugggggcagcgggggu	chr7:129710288-129710649(+)$1	361	273	303	9.8986
CAGCAGCAGUUUGAUGGUGAAUGGUAGGGU	chr7:104752850-104753137(-)$1	287	64	94	9.3465
GUGCGGACCGAAUGAGCAAGUGGACGAGCA	chr9:140446425-140446710(+)$1	285	148	178	9.1541
AGGGAGGGCGGGCGUGGGGUCAGGACCCGC	chr16:2301213-2301457(-)$1	244	158	188	11.4681
CCCCUAUCCUGGGCUGGUGGAGACCGGAGU	chr5:86564312-86564635(+)$1	323	96	126	10.2906
CGGCGCCCGGGGUGCCUGGCUGGGGGUCUC	chr17:1552925-1553197(-)$1	272	115	145	10.6336
UGGUGAGGCCCAGCUCUCUUUCCUCACUGG	chr9:139357280-139357577(-)$1	297	130	160	8.5258
CCUGUGACAUUGAUGAUGUGAAUAAGGUAG	chr17:29632339-29632585(+)$1	246	158	188	8.8244
CAUGGAGCGCAUGGUGCCCGCAGGUAUGGG	chr19:8550849-8551139(+)$1	290	46	76	9.3699
GGCGACGGCGAAACCUCGGAGCUCGCAGGG	chr5:137089641-137089900(-)$1	259	90	120	11.1920
CGCUgggccgggccccggccuccgcgcggc	chr8:145149985-145150240(+)$1	255	151	181	8.4281
agUAUGAACUAUGGAUCUUGGUGUUACAGG	chr17:80866136-80866390(+)$1	254	181	211	8.6945
CGGGCUGCGCGGCCGACCAGGCGAAGCAGU	chr17:74261444-74261704(+)$1	260	203	233	8.7331
gggggcggggccggggcggcggggggcccg	chr6:170123880-170124234(-)$1	354	83	113	9.8690
CGCGCAGCCGGGGCCACUCAGCCAGGCGGG	chr9:131418761-131419066(-)$1	305	72	102	8.6591
CUGGCAGACAGGCGGGCAAACAGUGAGCGC	chr19:18418202-18418465(-)$1	263	166	196	9.3095
UGGGAAAGGGCUUUCGAGGGGGUGGGGGCC	chr7:72721546-72721834(-)$1	288	102	132	8.7338
CAGGUUGUCAAUUUAUACGCUAUUAAUGCC	chr6:32940773-32941013(+)$1	240	130	160	8.4990
AAUUGAGCGACGGUUUUGGAACGGUGGUGG	chr6:32940765-32940973(+)$1	208	78	108	10.1274
GCCACCUCUUGCUUUACCUCAGAUAGAAGC	chr7:923731-923943(+)$1	212	17	47	11.0828
AGUAUCUUCCUCUGGCUCCCCUCAGGGCAG	chr1:155300133-155300396(+)$1	263	35	65	13.4124
GCGCUGGGUGCUGGCGUGGUACCGUGCGCG	chr2:74691996-74692401(-)$1	405	203	233	9.1040
AAUUGAGCGACGGUUUUGGAACGGUGGUGG	chr6:32940754-32940965(+)$1	211	89	119	10.1274
GCCGAGCUCCGUGACCAUGAAGGUCAAGGU	chr16:777314-777622(+)$1	308	179	209	10.8739
GAGACUGGCUGGAAGAGGAACCCAGAAGUA	chr12:123373017-123373294(-)$1	277	60	90	9.3260
ugcggggcgcgcgggccggacccggccUCU	chr9:101867464-101867740(+)$1	276	148	178	8.7465
GGAGGGCAUGUUGGUUGGAACUGUCCAAAG	chr17:29622717-29623003(+)$1	286	131	161	11.6868
GGUGUGGCUGUUGGUGUGAUAGUAAUACUG	chr3:99567154-99567412(+)$1	258	9	39	8.8757
GUUUGCUAGGCCGGCCGCCCUCUUGGAGCU	chr2:201728827-201729098(-)$1	271	32	62	10.1325
CGUUCUGUUUUGGAUCAGGCUCUGGAGUGG	chr1:87379610-87379897(-)$1	287	25	55	8.9952
CCUGCCUCACCCACACCUCCGCCUUCCCCG	chr7:150649802-150650042(-)$1	240	64	94	12.1275
GAGACGAGCCGGGAGGGCUUGGGCCCCUCC	chr20:42295702-42296047(+)$1	345	243	273	8.5905
CCUGGAGGGGUGUCCCAAGACCCCAGCCGG	chr16:88717258-88717512(-)$1	254	182	212	10.4281
UCCUGAUGUAAACACAGUUUGUUGAGAAAG	chr7:104752719-104752984(-)$1	265	26	56	10.8648
GCGGAAGCGCAGGCGCCGACUGCCUGGCGU	chr7:156432572-156432889(-)$1	317	13	43	8.7568
CGGGAGCGUCCUGUAGGUGCGGUGCACACU	chr16:841744-842018(+)$1	274	51	81	8.5913
CAGGAGUACCUCGAUCGUAGUGCAGUCUUC	chr7:6071033-6071337(-)$1	304	187	217	8.3180
CGGUCCAGGUUAAUUUGAAGGCUGAUUUUG	chr8:94752561-94752871(-)$1	310	198	228	8.5735
CCGGGCUGCUGGCGCUGGCAGCGCUGGCGC	chr2:97482430-97482743(+)$1	313	8	38	8.7405
GAACGCUGUAGUAUCGGCAAAGCAGAAGCU	chr7:923755-924006(+)$1	251	28	58	8.9319
GGUGUCUUUGCUUAGAGUGGCACCAAACGU	chr17:29622238-29622497(+)$1	259	145	175	9.5238
CUGGCUGACUUAUUUUCUUGAUUCUAGGCU	chr2:10583304-10583535(-)$1	231	69	99	9.1799
CUCUGUUGGGAGACGUUGUUCACUGAGGAU	chr20:30947379-30947703(+)$1	324	90	120	10.3023
UUUCUUUUGCAGAUACCCUGUAGGGAUAAA	chr7:6075705-6075949(-)$1	244	41	71	10.7456
CCCCGUGGUGGUGGCCGCCAUGCUGGGAGC	chr12:121125066-121125367(+)$1	301	14	44	10.4198
AGCACCCCCAGCCUGGUACGUACCGAUGAG	chr20:5986972-5987288(+)$1	316	211	241	9.8090
gccgggccggUGACGCCGGACGCCCAUGGA	chr21:45432186-45432494(+)$1	308	163	193	9.5728
GGGGCUGGGCCCGGUCUUUCUGCUUCUGGC	chr6:31371352-31371637(+)$1	285	59	89	8.9511
UGGUUUUGCCCACGUGGUGGAAGUGACUGG	chr7:6075004-6075252(-)$1	248	102	132	8.8218
CUUGGAGACCCGAAGCCGGAGCUAGAGGCA	chr2:11484151-11484474(-)$1	323	67	97	9.0764
CCAUCGACCGUGUGGGCCAGACCAUUGAGC	chr19:8550805-8551049(+)$1	244	5	35	11.7737

#DB
..))))))))))(((((((.(((((....(	chr19:1012203-1012500(-)$1	1	164	194	10.6308
((((.(((((...((((...(((.(.((((	chr3:99567538-99567834(+)$1	1	45	75	10.8500
((((.(.((((.((((.(.(.(((((.(((	chr7:129710288-129710649(+)$1	1	273	303	9.8986
((((((((((((.(.((...(((.((.(((	chr7:104752850-104753137(-)$1	1	64	94	9.3465
(((((((((.....(((..(.((..(((.(	chr9:140446425-140446710(+)$1	1	148	178	9.1541
((.(..(((((((((((...(((.((((((	chr16:2301213-2301457(-)$1	1	158	188	11.4681
((((...(((...(((.((.(((((.(.((	chr5:86564312-86564635(+)$1	1	96	126	10.2906
(((((((((((((.(((((((((((((..(	chr17:1552925-1553197(-)$1	1	115	145	10.6336
(..((.(((((((((((((..((((..(((	chr9:139357280-139357577(-)$1	1	130	160	8.5258
)).))))))))((((((...((((.((.((	chr17:29632339-29632585(+)$1	1	158	188	8.8244
(((((.((.((((.(((.(.(((((..(..	chr19:8550849-8551139(+)$1	1	46	76	9.3699
.(((((.(.(((..(((....(((.(((((	chr5:137089641-137089900(-)$1	1	90	120	11.1920
(((((..((((((((..((.(((((((..(	chr8:145149985-145150240(+)$1	1	151	181	8.4281
((((..(((((((((((((.(((..((((.	chr17:80866136-80866390(+)$1	1	181	211	8.6945
)((((((((((((.(((...((...)).))	chr17:74261444-74261704(+)$1	1	203	233	8.7331
.(((((((((.(((((...((((..(((((	chr6:170123880-170124234(-)$1	1	83	113	9.8690
.((...(((((.(((.(...(((((((...	chr9:131418761-131419066(-)$1	1	72	102	8.6591
(((((((..(((.((((...((((.(((..	chr19:18418202-18418465(-)$1	1	166	196	9.3095
)))))).((((((.((....((((.((.((	chr7:72721546-72721834(-)$1	1	102	132	8.7338
(..(((((((((((.(((.(((((....((	chr6:32940773-32941013(+)$1	1	130	160	8.4990
((((((.(((((..(((...((((((((((	chr6:32940765-32940973(+)$1	1	78	108	10.1274
((((.((.(((((((.((...((((..(((	chr7:923731-923943(+)$1	1	17	47	11.0828
((((.(((((((..(((...((((((((((	chr1:155300133-155300396(+)$1	1	35	65	13.4124
((((.((((((.((((((..(((((.((..	chr2:74691996-74692401(-)$1	1	203	233	9.1040
((((((.(((((..(((...((((((((((	chr6:32940754-32940965(+)$1	1	89	119	10.1274
)))((((((((((((((....(((((.(((	chr16:777314-777622(+)$1	1	179	209	10.8739
..((((((((((..((((....(((((((.	chr12:123373017-123373294(-)$1	1	60	90	9.3260
((((.((((((((((((((.(((((.((((	chr9:101867464-101867740(+)$1	1	148	178	8.7465
.(((((((((((((..((...(((((...(	chr17:29622717-29623003(+)$1	1	131	161	11.6868
.(((.((((((((((.(..(((((.(((((	chr3:99567154-99567412(+)$1	1	9	39	8.8757
.(((((....(((((((((.(((((.(((.	chr2:201728827-201729098(-)$1	1	32	62	10.1325
(((((((((((....((((.(((((..(((	chr1:87379610-87379897(-)$1	1	25	55	8.9952
)))(((...(((((((....(((((....(	chr7:150649802-150650042(-)$1	1	64	94	12.1275
(((..(((..(((((((...((...))...	chr20:42295702-42296047(+)$1	1	243	273	8.5905
(((.....(((((((((...(((((.((..	chr16:88717258-88717512(-)$1	1	182	212	10.4281
((((..(((((((.(((..(..(((...((	chr7:104752719-104752984(-)$1	1	26	56	10.8648
(((((((((.((((((.((..(((.((.((	chr7:156432572-156432889(-)$1	1	13	43	8.7568
((((.(.((((..((((.(((((((.((((	chr16:841744-842018(+)$1	1	51	81	8.5913
(.((((....((.(((....((((((((((	chr7:6071033-6071337(-)$1	1	187	217	8.3180
)(((((.(((....(((..(.(.((((((.	chr8:94752561-94752871(-)$1	1	198	228	8.5735
(((((((.(.((((((....((((((.(((	chr2:97482430-97482743(+)$1	1	8	38	8.7405
((..((((((((((((((..(((((..(((	chr7:923755-924006(+)$1	1	28	58	8.9319
((((.(((.((((((((((((.(((((((.	chr17:29622238-29622497(+)$1	1	145	175	9.5238
..)))))))))))((((...((((((((.(	chr2:10583304-10583535(-)$1	1	69	99	9.1799
(((((((((((((((((...((((.(((.(	chr20:30947379-30947703(+)$1	1	90	120	10.3023
((((((..(..((((((((((((((.(((.	chr7:6075705-6075949(-)$1	1	41	71	10.7456
))))(((((((((((.((..(((.((((((	chr12:121125066-121125367(+)$1	1	14	44	10.4198
.((((((((((...(((...((((((((((	chr20:5986972-5987288(+)$1	1	211	241	9.8090
(((.(.((((((((((((..(((((.(...	chr21:45432186-45432494(+)$1	1	163	193	9.5728
(((((....((((.(((..((((.....((	chr6:31371352-31371637(+)$1	1	59	89	8.9511
(((((.((((((..(((.(((..((((.((	chr7:6075004-6075252(-)$1	1	102	132	8.8218
((.((.(.((((..(((...(((...))).	chr2:11484151-11484474(-)$1	1	67	97	9.0764
((((..(((.(((((((...(((((...((	chr19:8550805-8551049(+)$1	1	5	35	11.7737

#PSSM
e : 0.32	f : 0.11	d : 0.09	g : 0.07	b : 0.05	[ : 0.05	i : 0.03	# : 0.03	h : 0.03	: : 0.03	G : 0.03	3 : 0.01	= : 0.01	! : 0.01	H : 0.01	2 : 0.01	
e : 0.39	f : 0.11	g : 0.09	d : 0.07	i : 0.05	! : 0.03	h : 0.03	G : 0.03	3 : 0.01	a : 0.01	b : 0.01	# : 0.01	= : 0.01	c : 0.01	[ : 0.01	2 : 0.01	
e : 0.39	f : 0.11	g : 0.11	d : 0.07	= : 0.05	i : 0.05	! : 0.05	[ : 0.03	h : 0.03	] : 0.01	b : 0.01	c : 0.01	
e : 0.37	g : 0.13	f : 0.09	= : 0.05	i : 0.05	h : 0.05	b : 0.03	c : 0.03	d : 0.03	! : 0.03	a : 0.01	" : 0.01	$ : 0.01	[ : 0.01	
[ : 0.16	e : 0.16	g : 0.15	! : 0.09	= : 0.07	f : 0.07	i : 0.07	" : 0.03	b : 0.03	h : 0.03	c : 0.01	$ : 0.01	d : 0.01	a : 0.01	
g : 0.16	e : 0.15	! : 0.09	[ : 0.09	= : 0.07	f : 0.07	i : 0.07	c : 0.07	a : 0.03	" : 0.03	h : 0.03	b : 0.01	$ : 0.01	d : 0.01	# : 0.01	
g : 0.13	e : 0.11	[ : 0.11	= : 0.09	f : 0.09	i : 0.07	c : 0.07	h : 0.05	# : 0.05	" : 0.03	b : 0.03	! : 0.03	d : 0.01	: : 0.01	$ : 0.01	a : 0.01	
g : 0.13	f : 0.11	c : 0.11	= : 0.09	e : 0.09	d : 0.09	i : 0.07	h : 0.05	[ : 0.05	# : 0.05	! : 0.03	b : 0.01	a : 0.01	" : 0.01	$ : 0.01	
g : 0.15	e : 0.11	d : 0.11	f : 0.11	= : 0.09	i : 0.09	c : 0.05	h : 0.05	[ : 0.05	# : 0.05	! : 0.03	a : 0.03	" : 0.01	
d : 0.15	g : 0.15	f : 0.13	= : 0.11	e : 0.11	c : 0.07	i : 0.05	h : 0.05	[ : 0.05	# : 0.03	! : 0.03	$ : 0.01	
g : 0.18	d : 0.13	f : 0.13	= : 0.11	e : 0.09	i : 0.07	h : 0.07	c : 0.05	" : 0.03	$ : 0.01	[ : 0.01	b : 0.01	# : 0.01	! : 0.01	
g : 0.16	f : 0.13	= : 0.11	i : 0.09	e : 0.07	" : 0.05	[ : 0.05	d : 0.05	c : 0.05	h : 0.05	a : 0.03	# : 0.03	$ : 0.01	! : 0.01	b : 0.01	
g : 0.16	! : 0.15	f : 0.11	i : 0.09	= : 0.07	e : 0.07	" : 0.05	c : 0.05	[ : 0.05	h : 0.05	d : 0.03	# : 0.03	$ : 0.01	
g : 0.13	! : 0.13	[ : 0.11	f : 0.11	c : 0.09	d : 0.07	= : 0.07	i : 0.07	h : 0.05	e : 0.03	# : 0.03	a : 0.01	$ : 0.01	" : 0.01	
c : 0.33	g : 0.13	d : 0.11	f : 0.09	= : 0.07	i : 0.07	[ : 0.03	h : 0.03	e : 0.03	b : 0.01	! : 0.01	# : 0.01	
c : 0.32	d : 0.15	g : 0.09	i : 0.07	f : 0.07	[ : 0.07	b : 0.05	= : 0.05	! : 0.03	a : 0.01	e : 0.01	h : 0.01	
c : 0.26	d : 0.15	b : 0.09	g : 0.07	i : 0.07	# : 0.07	[ : 0.05	= : 0.05	f : 0.05	a : 0.03	! : 0.01	" : 0.01	h : 0.01	
" : 0.33	b : 0.11	# : 0.11	! : 0.09	d : 0.07	i : 0.05	[ : 0.05	= : 0.03	f : 0.03	g : 0.01	a : 0.01	c : 0.01	h : 0.01	
" : 0.37	! : 0.16	# : 0.13	b : 0.05	i : 0.05	g : 0.03	[ : 0.03	= : 0.03	d : 0.03	a : 0.01	f : 0.01	c : 0.01	
" : 0.35	[ : 0.15	# : 0.13	! : 0.11	a : 0.07	= : 0.03	d : 0.03	e : 0.03	g : 0.01	i : 0.01	c : 0.01	
e : 0.35	c : 0.16	d : 0.13	[ : 0.05	! : 0.05	# : 0.05	= : 0.03	b : 0.03	" : 0.03	f : 0.03	g : 0.01	
e : 0.39	c : 0.20	d : 0.16	b : 0.05	! : 0.03	f : 0.03	= : 0.01	# : 0.01	g : 0.01	a : 0.01	[ : 0.01	
e : 0.39	c : 0.22	d : 0.18	l : 0.03	g : 0.03	f : 0.03	b : 0.01	= : 0.01	[ : 0.01	! : 0.01	
e : 0.39	d : 0.16	[ : 0.07	c : 0.07	! : 0.05	l : 0.05	f : 0.05	h : 0.03	g : 0.03	= : 0.01	$ : 0.01	
e : 0.35	[ : 0.13	d : 0.09	f : 0.07	b : 0.05	! : 0.05	l : 0.05	c : 0.03	h : 0.03	g : 0.03	a : 0.01	# : 0.01	$ : 0.01	
b : 0.22	[ : 0.16	f : 0.11	c : 0.09	! : 0.09	d : 0.07	# : 0.05	e : 0.03	h : 0.03	" : 0.03	g : 0.01	$ : 0.01	l : 0.01	
b : 0.22	c : 0.16	d : 0.09	! : 0.09	[ : 0.07	f : 0.07	# : 0.05	g : 0.05	" : 0.05	a : 0.03	h : 0.03	$ : 0.01	
c : 0.26	d : 0.11	f : 0.09	[ : 0.09	" : 0.07	# : 0.05	g : 0.05	b : 0.05	a : 0.03	! : 0.03	h : 0.03	] : 0.01	n : 0.01	3 : 0.01	$ : 0.01	
c : 0.26	d : 0.15	f : 0.09	g : 0.07	[ : 0.05	h : 0.05	# : 0.03	b : 0.03	! : 0.03	" : 0.03	a : 0.01	e : 0.01	m : 0.01	n : 0.01	w : 0.01	l : 0.01	3 : 0.01	^ : 0.01	
c : 0.20	d : 0.18	f : 0.09	g : 0.07	b : 0.07	h : 0.05	n : 0.03	e : 0.01	m : 0.01	v : 0.01	w : 0.01	l : 0.01	p : 0.01	' : 0.01	3 : 0.01	^ : 0.01	[ : 0.01	a : 0.01	! : 0.01	" : 0.01	] : 0.01	

#score	515.7023291449262
#seq	53
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_UTR_m2_run2.txt

#BEAR
hhhh"""ccc!!bbmmmmbb]ccc333hhh	chr7:2394794-2395042(+)$1	248	190	220	14.1157
c============bblllbb]=========	chr19:41770253-41770537(+)$1	284	9	39	13.3952
Ceeeeea[ccc[bbmmmmbb22ccc]a]ee	chr12:6631933-6632176(+)$1	243	66	96	12.7270
eeeee[dddd!!bbmmmmbb]dddd]eeee	chr10:32345096-32345366(-)$1	270	187	217	12.9586
::ggggggg"""bbmmmmbb333ggggggg	chr3:127324886-127325137(+)$1	251	115	145	14.3768
==========!!bbmmmmbb]=========	chr7:30671820-30672070(+)$1	250	108	138	16.8115
bb"""eeeee!!bbmmmmbb22eeeee]bb	chrX:153592530-153592755(-)$1	225	24	54	13.5306
ggggffffff!!bbmmmmbb]ffffff22g	chr19:10789697-10789951(+)$1	254	56	86	13.7865
f!!ggggggg[abbmmmmbb]a]ggggggg	chr2:114716875-114717114(+)$1	239	126	156	15.8733
hhhhhh"""a!!bbmmmmbb22a4444hhh	chr5:5422726-5423059(+)$1	333	216	246	13.4018
:ggggggg!!ddddmmmmdddd22gggggg	chr2:55646717-55646981(-)$1	264	118	148	9.7942
[iiiiiiiii[bbnnnnnbb]iiiiiiiii	chrX:153590928-153591130(-)$1	202	132	162	12.2319
bccc[a[bb!!cccmmmmccc]bb]a]ccc	chr16:23847386-23847701(+)$1	315	81	111	10.9733
:eeeee[a####bbmmmmbb4444a]eeee	chr1:154574673-154574943(-)$1	270	108	138	13.0077
ccc[dddd!!a[bbmmmmbb]a22dddd]c	chr3:41240891-41241198(+)$1	307	169	199	13.8005
[ccc[ccc[ccc[ammmmaccc]ccc]ccc	chr5:132387726-132387981(+)$1	255	77	107	11.6773
::dddda[ccc[bbmmmmbb]ccc]a]ddd	chr9:35072321-35072561(-)$1	240	167	197	11.4102
fffggggggg!!bbmmmmbbggggggg]ff	chrX:153582183-153582388(-)$1	205	26	56	14.9204
####a[ccc!!cccmmmmccc4444ccca4	chrX:153592875-153593123(-)$1	248	63	93	11.8430
fffffeeeee!!bbmmmmbb22eeeee22f	chr14:31676507-31676834(-)$1	327	182	212	13.4472
b[ccc[dddd!!bbmmmmbb22ddddccc]	chr17:7479845-7480086(+)$1	241	33	63	13.4655
dd!!ggggggg[bbmmmmbb]gggggggdd	chr19:50304702-50304969(+)$1	267	152	182	15.0213
cc[eeeee!!bboooooobb22eeeee333	chr11:118923357-118923640(-)$1	283	218	248	10.3020
ccc:==========mmmm==========a!	chr2:48031948-48032214(+)$1	266	111	141	12.0153
hh$$$$$dddd[bbmmmmbb]dddd4444h	chr12:57905378-57905661(+)$1	283	228	258	11.8449
=[ggggggga!!bbmmmmbb22a]gggggg	chr10:43891837-43892114(-)$1	277	106	136	15.7430
[ffffff!!bb[bbmmmmbbbb22ffffff	chr12:98909404-98909692(+)$1	288	134	164	12.0137
ee[ggggggg[cccmmmmcccggggggg00	chr9:111775540-111775910(-)$1	370	145	175	11.7039
iiii"""bb!!cccmmmmccc22bb]iiii	chr2:225449612-225449884(-)$1	272	191	221	11.5012
bb[gggggggbboooooobb]ggggggg]b	chr3:33759305-33759566(-)$1	261	92	122	11.1661
c[ccc[bb[ccc[ammmmaccc]bbccc]c	chr1:894494-894737(-)$1	243	40	70	10.8806
[ggggggg[acccmmmmccc]a]ggggggg	chr6:160210333-160210617(-)$1	284	34	64	11.4259
b[iiiiiiiii[bbmmmmbb]iiiiiiiii	chr14:102553248-102553481(-)$1	233	10	40	15.8928
[a[ggggggg[cccmmmmcccggggggg]a	chr7:72936345-72936665(-)$1	320	227	257	13.0435
d$$$$$aeeeeebbmmmmbb]eeeee]a66	chr7:2394892-2395152(+)$1	260	14	44	11.3154
[ffffff[bbbbbbmmmmbb]bb4444bb]	chr22:22893248-22893511(-)$1	263	134	164	11.7248
ccciiiiiiiiibbmmmmbb]iiiiiiiii	chr5:5422893-5423137(+)$1	244	196	226	15.6183
cc[ccc!!ffffffmmmmffffff]ccc]c	chr17:1587973-1588194(-)$1	221	27	57	10.4219
ddd!!ggggggg[bblllbb]ggggggg]d	chr4:140222800-140223061(+)$1	261	64	94	11.6179
ffffff!!ccc[bbmmmmbb4444ccc]ff	chrX:54068961-54069295(-)$1	334	52	82	13.9405
###ccc[a[eeeeemmmmeeeeea]cccee	chr14:104152454-104152716(+)$1	262	161	191	9.2367
ffffffffff!!bbmmmmbb]ffffff22f	chr19:10789751-10789969(+)$1	218	2	32	13.2493
cccggggggg[bbnnnnnbb]ggggggg88	chr17:73389605-73389889(-)$1	284	42	72	10.9944
[iiiiiiiii[bbnnnnnbb]iiiiiiiii	chrX:153590930-153591138(-)$1	208	140	170	12.2319
cc"""gggggggbbmmmmbb]ggggggg]c	chr1:19431004-19431254(-)$1	250	38	68	15.5958
cc[a!!eeeee[bbmmmmbbeeeee22a]c	chr6:31749811-31750038(-)$1	227	147	177	13.2914
::eeeee!!bb[bbmmmmbb]bb22eeeee	chr7:99696831-99697083(-)$1	252	38	68	10.9317
bb!!eeeee[a[bbmmmmbb]a]eeeee22	chr12:6715459-6715711(-)$1	252	215	245	13.9718
ffff!!dddd[cccmmmmcccddddfffff	chrX:153592793-153592998(-)$1	205	113	143	9.9945
fff[eeeee!!cccmmmmccc333eeeeef	chrX:153588805-153589023(-)$1	218	151	181	11.6021
==========[bbnnnnnbb==========	chr10:32344779-32345071(-)$1	292	209	239	12.2440

#otherMatches

#Seq PSSM
GGAGAACGGCGACGCGGACGAGCCCUCCUU	chr7:2394794-2395042(+)$1	248	190	220	14.1157
CGGUGGCGGCGGCCAUUUUGAGCCGCUGCC	chr19:41770253-41770537(+)$1	284	9	39	13.3952
AGGAGGUGAUUGAAUUCUUUGUGAUGGUCU	chr12:6631933-6632176(+)$1	243	66	96	12.7270
CGCUGAGGAgccgcggacgcucuccccggu	chr10:32345096-32345366(-)$1	270	187	217	12.9586
GCCAGGGAGCACGUGCUGGCCUACUUCCUG	chr3:127324886-127325137(+)$1	251	115	145	14.3768
GCUAUGCCAGGACUGAUGAGAUUGGCGUGG	chr7:30671820-30672070(+)$1	250	108	138	16.8115
CGUGGGCCUGGAUUGGAGAAGACAGGUGUG	chrX:153592530-153592755(-)$1	225	24	54	13.5306
CUGUGUUUUGUUCCCCUAGGCCAGAGCCAA	chr19:10789697-10789951(+)$1	254	56	86	13.7865
UAAGUGAAUAAGCUAGAAAGACAUGUUUAU	chr2:114716875-114717114(+)$1	239	126	156	15.8733
GCCCCGGCGGCAUCAGCAGAGACAGGACGG	chr5:5422726-5423059(+)$1	333	216	246	13.4018
AAGCCCCCACCCCCGGGAGGGGAAGGGGGC	chr2:55646717-55646981(-)$1	264	118	148	9.7942
UGGCUGGGGUGUCCCUGCGAGGUCUCAGCC	chrX:153590928-153591130(-)$1	202	132	162	12.2319
CUCUCGGGCUCCGGCUCCCCGCGCGCAAGA	chr16:23847386-23847701(+)$1	315	81	111	10.9733
AGGGGCGUGCAUCUCAGAAGUCAGGGGCUC	chr1:154574673-154574943(-)$1	270	108	138	13.0077
GACGGAGGAAGGUCUGAGGAGCAGCUUCAG	chr3:41240891-41241198(+)$1	307	169	199	13.8005
UAGGCGCUCGCGUGGACACCGCAAGCCCCU	chr5:132387726-132387981(+)$1	255	77	107	11.6773
UACCCGCGGGCCGCCACAGCCGCCGGCCGG	chr9:35072321-35072561(-)$1	240	167	197	11.4102
UGCCUAUGGGCCUGGCCUCACCCAUGGAGU	chrX:153582183-153582388(-)$1	205	26	56	14.9204
CUAAGAUCGAAUGUGACGACAAGGGCGACG	chrX:153592875-153593123(-)$1	248	63	93	11.8430
CUCUGCCGGCGGCCUGUUGGGAGCUGGAUC	chr14:31676507-31676834(-)$1	327	182	212	13.4472
GCGCCUCCUGUCACGCCUGUAUCGGGGGCA	chr17:7479845-7480086(+)$1	241	33	63	13.4655
UCAGUGGCCAGCACCGACGUCCUGGUCAGA	chr19:50304702-50304969(+)$1	267	152	182	15.0213
CCAUGGCCAAGCUGCUGCGUGAGGCUAAUC	chr11:118923357-118923640(-)$1	283	218	248	10.3020
AGCUGUAAUGGCCCAGAUGGGUUGUUACGU	chr2:48031948-48032214(+)$1	266	111	141	12.0153
CUCAAAUGGGGAACCCCUGUACCCUUAGAA	chr12:57905378-57905661(+)$1	283	228	258	11.8449
CCCCGGAGCCCUCUGCGUGGUUGAGCUUCG	chr10:43891837-43892114(-)$1	277	106	136	15.7430
AGCCGUGAGGCUCGGAGGCGGCAGCGCGGU	chr12:98909404-98909692(+)$1	288	134	164	12.0137
UCGCCGCGGCGCGGAGUCCCGGCUGCGGGA	chr9:111775540-111775910(-)$1	370	145	175	11.7039
AAGGACACCAAGAUGCGGAUCCGGGCCUUU	chr2:225449612-225449884(-)$1	272	191	221	11.5012
GUACUUCUGCGCCCAGGUGCAGCAGAAGGA	chr3:33759305-33759566(-)$1	261	92	122	11.1661
ggggccugggcggCGGAAGUGCGCAGCCGC	chr1:894494-894737(-)$1	243	40	70	10.8806
CUGUGGUCGCCGGUCGGCCGAGGGGCCGCG	chr6:160210333-160210617(-)$1	284	34	64	11.4259
UCUUCCGGAAGGUUCGGGAGGCUUCUGGAA	chr14:102553248-102553481(-)$1	233	10	40	15.8928
AUGACUGUCGCGCGGCCGCGCCGGCGGUGA	chr7:72936345-72936665(-)$1	320	227	257	13.0435
CGACAGCCGGGCCCAGGCGGUGUCCGAGGA	chr7:2394892-2395152(+)$1	260	14	44	11.3154
CUUCCCGCCACUCUUCAUGGCAGCCUUUGA	chr22:22893248-22893511(-)$1	263	134	164	11.7248
AGGGCUGCGCCUCUCUGCAGCAGGUGCAGC	chr5:5422893-5423137(+)$1	244	196	226	15.6183
UUGCGCACUUCCCGGCGCUGGGAACGCGGA	chr17:1587973-1588194(-)$1	221	27	57	10.4219
GGCGGCGGUCGGACAAACUGACUGACCGAG	chr4:140222800-140223061(+)$1	261	64	94	11.6179
GAGAGGACGCGUGCUGCCGCCUCCCGCCCC	chrX:54068961-54069295(-)$1	334	52	82	13.9405
AACGCCGCAUGGCACAGCUGCUAGGGGUCA	chr14:104152454-104152716(+)$1	262	161	191	9.2367
CUGUGUUUUGUUCCCCUAGGCCAGAGCCAA	chr19:10789751-10789969(+)$1	218	2	32	13.2493
GGGUGGCAUUGUGUGUCCCAGAGUGCCGGA	chr17:73389605-73389889(-)$1	284	42	72	10.9944
UGGCUGGGGUGUCCCUGCGAGGUCUCAGCC	chrX:153590930-153591138(-)$1	208	140	170	12.2319
GUAACUGGUAUCCUUGGCAGUGAUAUCACA	chr1:19431004-19431254(-)$1	250	38	68	15.5958
CAGUGACCCAGCGGUGCCCCCUGGGGAGGU	chr6:31749811-31750038(-)$1	227	147	177	13.2914
UUUUGUUCUUCUCCUUUAGGUGGUAAAUAA	chr7:99696831-99697083(-)$1	252	38	68	10.9317
GUGAGGAGGAGGAUAUGGAUGCACUUUUGA	chr12:6715459-6715711(-)$1	252	215	245	13.9718
CAGGCUGUGAUGGCCUAAGUCUCGCCCUGC	chrX:153592793-153592998(-)$1	205	113	143	9.9945
AGGUGGCCUGGGCCUGACGGUGGAGGGCCC	chrX:153588805-153589023(-)$1	218	151	181	11.6021
CGCUUCAGACCUCUCAACGAGUCUGAAGUG	chr10:32344779-32345071(-)$1	292	209	239	12.2440

#DB
((((...(((..((....)).)))...)))	chr7:2394794-2395042(+)$1	1	190	220	14.1157
(((((((((((((((...)).)))))))))	chr19:41770253-41770537(+)$1	1	9	39	13.3952
(((((((.(((.((....))..))).).))	chr12:6631933-6632176(+)$1	1	66	96	12.7270
(((((.((((..((....)).)))).))))	chr10:32345096-32345366(-)$1	1	187	217	12.9586
..(((((((...((....))...)))))))	chr3:127324886-127325137(+)$1	1	115	145	14.3768
((((((((((..((....)).)))))))))	chr7:30671820-30672070(+)$1	1	108	138	16.8115
((...(((((..((....))..))))).))	chrX:153592530-153592755(-)$1	1	24	54	13.5306
((((((((((..((....)).))))))..)	chr19:10789697-10789951(+)$1	1	56	86	13.7865
(..(((((((.(((....)).).)))))))	chr2:114716875-114717114(+)$1	1	126	156	15.8733
((((((...(..((....))..)....)))	chr5:5422726-5423059(+)$1	1	216	246	13.4018
.(((((((..((((....))))..))))))	chr2:55646717-55646981(-)$1	1	118	148	9.7942
.(((((((((.((.....)).)))))))))	chrX:153590928-153591130(-)$1	1	132	162	12.2319
((((.(.((..(((....))).)).).)))	chr16:23847386-23847701(+)$1	1	81	111	10.9733
.(((((.(....((....))....).))))	chr1:154574673-154574943(-)$1	1	108	138	13.0077
(((.((((..(.((....)).)..)))).)	chr3:41240891-41241198(+)$1	1	169	199	13.8005
.(((.(((.(((.(....)))).))).)))	chr5:132387726-132387981(+)$1	1	77	107	11.6773
..(((((.(((.((....)).))).).)))	chr9:35072321-35072561(-)$1	1	167	197	11.4102
((((((((((..((....))))))))).))	chrX:153582183-153582388(-)$1	1	26	56	14.9204
....(.(((..(((....)))....)))).	chrX:153592875-153593123(-)$1	1	63	93	11.8430
((((((((((..((....))..)))))..)	chr14:31676507-31676834(-)$1	1	182	212	13.4472
(.(((.((((..((....))..))))))).	chr17:7479845-7480086(+)$1	1	33	63	13.4655
((..(((((((.((....)).)))))))))	chr19:50304702-50304969(+)$1	1	152	182	15.0213
((.(((((..((......))..)))))...	chr11:118923357-118923640(-)$1	1	218	248	10.3020
))).((((((((((....))))))))))(.	chr2:48031948-48032214(+)$1	1	111	141	12.0153
((.....((((.((....)).))))....)	chr12:57905378-57905661(+)$1	1	228	258	11.8449
(.((((((((..((....))..).))))))	chr10:43891837-43892114(-)$1	1	106	136	15.7430
.((((((..((.((....))))..))))))	chr12:98909404-98909692(+)$1	1	134	164	12.0137
((.(((((((.(((....))))))))))..	chr9:111775540-111775910(-)$1	1	145	175	11.7039
((((...((..(((....)))..)).))))	chr2:225449612-225449884(-)$1	1	191	221	11.5012
((.(((((((((......)).))))))).)	chr3:33759305-33759566(-)$1	1	92	122	11.1661
(.(((.((.(((.(....)))).))))).)	chr1:894494-894737(-)$1	1	40	70	10.8806
.(((((((.((((....))).).)))))))	chr6:160210333-160210617(-)$1	1	34	64	11.4259
(.(((((((((.((....)).)))))))))	chr14:102553248-102553481(-)$1	1	10	40	15.8928
.(.(((((((.(((....)))))))))).)	chr7:72936345-72936665(-)$1	1	227	257	13.0435
(.....((((((((....)).))))).)..	chr7:2394892-2395152(+)$1	1	14	44	11.3154
.((((((.((((((....)).))....)).	chr22:22893248-22893511(-)$1	1	134	164	11.7248
((((((((((((((....)).)))))))))	chr5:5422893-5423137(+)$1	1	196	226	15.6183
((.(((..((((((....)))))).))).)	chr17:1587973-1588194(-)$1	1	27	57	10.4219
(((..(((((((.((...)).))))))).)	chr4:140222800-140223061(+)$1	1	64	94	11.6179
((((((..(((.((....))....))).))	chrX:54068961-54069295(-)$1	1	52	82	13.9405
...(((.(.(((((....)))))).)))))	chr14:104152454-104152716(+)$1	1	161	191	9.2367
((((((((((..((....)).))))))..)	chr19:10789751-10789969(+)$1	1	2	32	13.2493
((((((((((.((.....)).)))))))..	chr17:73389605-73389889(-)$1	1	42	72	10.9944
.(((((((((.((.....)).)))))))))	chrX:153590930-153591138(-)$1	1	140	170	12.2319
((...(((((((((....)).))))))).)	chr1:19431004-19431254(-)$1	1	38	68	15.5958
((.(..(((((.((....)))))))..).)	chr6:31749811-31750038(-)$1	1	147	177	13.2914
..(((((..((.((....)).))..)))))	chr7:99696831-99697083(-)$1	1	38	68	10.9317
((..(((((.(.((....)).).)))))..	chr12:6715459-6715711(-)$1	1	215	245	13.9718
((((..((((.(((....))))))))))))	chrX:153592793-153592998(-)$1	1	113	143	9.9945
(((.(((((..(((....)))...))))))	chrX:153588805-153589023(-)$1	1	151	181	11.6021
((((((((((.((.....))))))))))))	chr10:32344779-32345071(-)$1	1	209	239	12.2440

#PSSM
c : 0.19	f : 0.13	[ : 0.13	b : 0.11	: : 0.09	h : 0.05	= : 0.05	d : 0.05	e : 0.03	# : 0.03	C : 0.01	g : 0.01	i : 0.01	
c : 0.19	f : 0.15	e : 0.07	[ : 0.07	h : 0.05	= : 0.05	: : 0.05	b : 0.05	g : 0.05	i : 0.05	# : 0.03	d : 0.03	! : 0.01	a : 0.01	$ : 0.01	
c : 0.15	f : 0.15	[ : 0.11	g : 0.09	e : 0.07	i : 0.07	= : 0.05	! : 0.05	h : 0.03	" : 0.03	d : 0.03	# : 0.03	$ : 0.03	
g : 0.21	c : 0.11	f : 0.11	e : 0.09	i : 0.09	= : 0.05	! : 0.05	h : 0.03	" : 0.03	[ : 0.03	$ : 0.03	d : 0.01	# : 0.01	: : 0.01	a : 0.01	
g : 0.21	e : 0.13	f : 0.11	" : 0.07	= : 0.07	i : 0.07	c : 0.07	! : 0.05	[ : 0.03	d : 0.03	$ : 0.03	h : 0.01	a : 0.01	
g : 0.25	e : 0.15	f : 0.09	= : 0.07	[ : 0.07	i : 0.07	c : 0.05	" : 0.03	d : 0.03	$ : 0.03	! : 0.03	h : 0.01	a : 0.01	
g : 0.25	e : 0.13	= : 0.07	d : 0.07	f : 0.07	i : 0.07	" : 0.05	a : 0.05	[ : 0.05	c : 0.03	! : 0.03	$ : 0.01	b : 0.01	
g : 0.25	e : 0.13	d : 0.09	= : 0.07	i : 0.07	! : 0.07	c : 0.05	[ : 0.05	b : 0.05	f : 0.03	a : 0.03	" : 0.01	
g : 0.21	e : 0.11	c : 0.09	! : 0.09	= : 0.07	d : 0.07	i : 0.07	[ : 0.07	f : 0.05	b : 0.05	" : 0.01	# : 0.01	
g : 0.17	! : 0.13	c : 0.11	e : 0.09	= : 0.07	d : 0.07	i : 0.07	f : 0.05	a : 0.05	b : 0.05	" : 0.01	# : 0.01	[ : 0.01	
! : 0.29	[ : 0.15	c : 0.11	b : 0.09	g : 0.05	e : 0.05	= : 0.03	d : 0.03	a : 0.03	i : 0.03	" : 0.01	# : 0.01	f : 0.01	
! : 0.21	[ : 0.21	c : 0.19	b : 0.13	= : 0.03	e : 0.03	g : 0.03	" : 0.01	a : 0.01	d : 0.01	# : 0.01	i : 0.01	f : 0.01	
b : 0.64	c : 0.15	[ : 0.05	= : 0.03	o : 0.03	d : 0.01	f : 0.01	e : 0.01	
b : 0.60	c : 0.13	n : 0.07	a : 0.03	o : 0.03	d : 0.01	= : 0.01	m : 0.01	f : 0.01	e : 0.01	
m : 0.84	n : 0.07	b : 0.03	o : 0.03	
m : 0.84	n : 0.07	l : 0.03	o : 0.03	
m : 0.84	n : 0.07	l : 0.03	o : 0.03	
m : 0.82	n : 0.07	l : 0.03	o : 0.03	c : 0.01	
b : 0.72	c : 0.15	a : 0.03	d : 0.01	= : 0.01	f : 0.01	e : 0.01	
b : 0.72	c : 0.19	d : 0.01	= : 0.01	f : 0.01	e : 0.01	
] : 0.47	c : 0.17	2 : 0.13	4 : 0.03	= : 0.03	e : 0.03	3 : 0.01	d : 0.01	g : 0.01	b : 0.01	f : 0.01	
2 : 0.15	g : 0.15	c : 0.07	= : 0.07	d : 0.07	a : 0.07	i : 0.07	f : 0.05	4 : 0.05	b : 0.05	e : 0.05	3 : 0.03	] : 0.01	
g : 0.15	e : 0.11	] : 0.09	= : 0.07	d : 0.07	2 : 0.07	i : 0.07	c : 0.05	f : 0.05	b : 0.05	4 : 0.05	3 : 0.03	a : 0.03	
g : 0.21	e : 0.11	4 : 0.09	c : 0.07	= : 0.07	d : 0.07	2 : 0.07	i : 0.07	f : 0.05	b : 0.05	] : 0.01	a : 0.01	3 : 0.01	
g : 0.25	e : 0.13	d : 0.09	= : 0.07	i : 0.07	] : 0.07	c : 0.05	f : 0.05	4 : 0.05	b : 0.03	3 : 0.01	a : 0.01	2 : 0.01	
g : 0.25	e : 0.13	c : 0.11	= : 0.07	] : 0.07	f : 0.07	i : 0.07	4 : 0.05	a : 0.03	d : 0.03	3 : 0.01	2 : 0.01	
g : 0.25	e : 0.15	c : 0.11	i : 0.09	= : 0.07	f : 0.07	] : 0.07	4 : 0.05	3 : 0.01	a : 0.01	d : 0.01	2 : 0.01	
g : 0.23	c : 0.13	e : 0.09	i : 0.09	= : 0.07	] : 0.07	2 : 0.05	h : 0.03	d : 0.03	f : 0.03	a : 0.03	3 : 0.01	4 : 0.01	b : 0.01	
] : 0.15	e : 0.11	g : 0.09	i : 0.09	2 : 0.07	f : 0.07	= : 0.05	c : 0.05	h : 0.03	b : 0.03	d : 0.03	a : 0.03	3 : 0.01	4 : 0.01	0 : 0.01	6 : 0.01	8 : 0.01	
c : 0.13	f : 0.13	g : 0.11	e : 0.09	i : 0.09	h : 0.05	= : 0.05	d : 0.05	b : 0.03	] : 0.03	4 : 0.01	3 : 0.01	! : 0.01	0 : 0.01	a : 0.01	6 : 0.01	8 : 0.01	2 : 0.01	

#score	648.0870885846219
#seq	51
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_CDS_m3_run1.txt

#BEAR
hhhhhhhhlllhhhhhhhheeeeec	chr2:38585687-38585938(-)$1	251	107	132	12.3361
h[a[cccnnnnnccc]a333hhhhh	chr4:169931067-169931305(-)$1	238	65	90	12.9889
:ggggggglllggggggghhhhhhh	chr17:80214237-80214490(-)$1	253	104	129	12.2076
hhhhhhhhlllhhhhhhhhhhhhhh	chr12:107360949-107361161(+)$1	212	106	131	14.8716
h[a[cccnnnnnccc]a333hhhhh	chr4:169931105-169931320(-)$1	215	80	105	12.9889
hhhh!!bboooooobb]hhhhhhhh	chr12:102110910-102111220(+)$1	310	87	112	11.3886
ee"""ccclllccc333eeeee]cc	chr2:242263731-242263967(+)$1	236	178	203	9.9054
hhhhhhhhlllhhhhhhhhhhhhhh	chr12:107360961-107361220(+)$1	259	94	119	14.8716
[gggggggnnnnnggggggg]a]bb	chr8:64101182-64101435(+)$1	253	108	133	10.0141

#otherMatches

#Seq PSSM
gacggagucucgcucugucgcccag	chr2:38585687-38585938(-)$1	251	107	132	12.3361
AUGGACAAAGUGUGUGCUGUUUUUG	chr4:169931067-169931305(-)$1	238	65	90	12.9889
gacagggucuugcucuguggcccag	chr17:80214237-80214490(-)$1	253	104	129	12.2076
gacagagucuuacucugucaaccca	chr12:107360949-107361161(+)$1	212	106	131	14.8716
AUGGACAAAGUGUGUGCUGUUUUUG	chr4:169931105-169931320(-)$1	215	80	105	12.9889
UUAUAAUCUACUUUGAGGUGAAGAU	chr12:102110910-102111220(+)$1	310	87	112	11.3886
ccccuggcucagccuccggaguagc	chr2:242263731-242263967(+)$1	236	178	203	9.9054
gacagagucuuacucugucaaccca	chr12:107360961-107361220(+)$1	259	94	119	14.8716
agauggagucgcucucugucgccca	chr8:64101182-64101435(+)$1	253	108	133	10.0141

#DB
((((((((...))))))))((((((	chr2:38585687-38585938(-)$1	1	107	132	12.3361
(.(.(((.....))).)...)))))	chr4:169931067-169931305(-)$1	1	65	90	12.9889
.(((((((...)))))))(((((((	chr17:80214237-80214490(-)$1	1	104	129	12.2076
((((((((...))))))))((((((	chr12:107360949-107361161(+)$1	1	106	131	14.8716
(.(.(((.....))).)...)))))	chr4:169931105-169931320(-)$1	1	80	105	12.9889
((((..((......)).))))))))	chr12:102110910-102111220(+)$1	1	87	112	11.3886
((...(((...)))...))))).))	chr2:242263731-242263967(+)$1	1	178	203	9.9054
((((((((...))))))))((((((	chr12:107360961-107361220(+)$1	1	94	119	14.8716
.(((((((.....))))))).).))	chr8:64101182-64101435(+)$1	1	108	133	10.0141

#PSSM
h : 0.66	: : 0.11	e : 0.11	[ : 0.11	
h : 0.44	[ : 0.22	g : 0.22	e : 0.11	
h : 0.44	a : 0.22	g : 0.22	" : 0.11	
h : 0.44	[ : 0.22	g : 0.22	" : 0.11	
h : 0.33	c : 0.22	g : 0.22	! : 0.11	" : 0.11	
h : 0.33	c : 0.33	g : 0.22	! : 0.11	
h : 0.33	c : 0.33	g : 0.22	b : 0.11	
h : 0.33	n : 0.22	g : 0.22	b : 0.11	c : 0.11	
l : 0.55	n : 0.33	o : 0.11	
l : 0.55	n : 0.33	o : 0.11	
l : 0.55	n : 0.33	o : 0.11	
h : 0.33	n : 0.33	g : 0.11	o : 0.11	c : 0.11	
h : 0.33	c : 0.33	g : 0.11	o : 0.11	n : 0.11	
h : 0.33	c : 0.33	g : 0.22	o : 0.11	
h : 0.33	c : 0.22	g : 0.22	b : 0.11	3 : 0.11	
h : 0.33	] : 0.22	g : 0.22	b : 0.11	3 : 0.11	
h : 0.33	a : 0.22	g : 0.22	] : 0.11	3 : 0.11	
h : 0.44	3 : 0.22	g : 0.22	e : 0.11	
h : 0.55	3 : 0.22	e : 0.11	g : 0.11	
h : 0.44	e : 0.22	3 : 0.22	g : 0.11	
h : 0.66	e : 0.22	] : 0.11	
h : 0.66	e : 0.22	a : 0.11	
h : 0.66	] : 0.22	e : 0.11	
h : 0.66	e : 0.11	c : 0.11	b : 0.11	
h : 0.66	c : 0.22	b : 0.11	

#score	111.57309605463328
#seq	9
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_transcript_m1_run1.txt

#BEAR
iiii[bb[a[eeeeennnnneeeeea]bb]iiiii	chr2:86362922-86363128(+)$1	206	136	171	13.6075
fffff####eeeeeooooooeeeee4444ffffff	chr11:93466327-93466548(-)$1	221	83	118	11.9355
::ccc[a####ddddnnnnndddd4444a]ccc:e	chr2:216286713-216286917(-)$1	204	13	48	12.0944
:===========[bbnnnnnbb]===========B	chr12:6619524-6619742(+)$1	218	44	79	14.6225
ggggccc"""eeeeennnnneeeee333ccc333g	chr2:21241805-21242066(-)$1	261	173	208	15.4337
dd"""ggggggg!!ccclllccc333ggggggg33	chr15:25344579-25344819(+)$1	240	2	37	13.8833
:===========[bbnnnnnbb]===========B	chr12:6619466-6619687(+)$1	221	102	137	14.6225
dd[eeeee####cccnnnnnccc4444eeeee]dd	chr2:21246382-21246621(-)$1	239	27	62	15.3483
[eeeeegggggggooooooggggggg333eeeee]	chr22:39709786-39709994(-)$1	208	32	67	11.3674
=========!!ddddnnnnndddd333========	chr19:48259073-48259275(+)$1	202	101	136	18.2307
eeee[eeeee!!a[annnnna]a22eeeee]eeee	chr18:47340704-47340907(+)$1	203	61	96	12.8667
e[ccc[a"""eeeeennnnneeeee333a]ccc]e	chr16:2204923-2205138(-)$1	215	86	121	15.0357
cc[bb[ccc[ddddoooooodddd333cccbbccc	chr22:29729058-29729336(-)$1	278	241	276	13.0227
ddd[eeeee!!ddddoooooodddd22eeeee]dd	chr4:53578686-53578890(+)$1	204	113	148	12.1086
=========[ccc!!ammmma22ccc]========	chr12:49061197-49061410(-)$1	213	115	150	13.6848
[a[ggggggg!!cccmmmmccc]ggggggga]ccc	chr2:216229576-216229807(-)$1	231	72	107	12.0969
""ggggggg"""cccnnnnnccc4444ggggggg]	chr2:203156022-203156226(+)$1	204	163	198	17.2776
g[ccc[a[cccacccmmmmccc]a333ccc]a]cc	chr12:7076427-7076634(-)$1	207	87	122	13.0528
ddd[eeeee####bbnnnnnbb4444eeeee]ddd	chr3:169482673-169482888(-)$1	215	129	164	13.0490
$$$$eeeee"""cccooooooccc333eeeeeeee	chr16:71792205-71792416(-)$1	211	56	91	13.7809
""ggggggg"""cccnnnnnccc4444ggggggg]	chr2:203156018-203156222(+)$1	204	167	202	17.2776
=========="""bbmmmmbb22==========22	chr12:49048130-49048346(-)$1	216	128	163	12.8654
ff[bb[iiiiiiiiinnnnniiiiiiiii]bbfff	chr17:74554825-74555032(+)$1	207	4	39	13.2628
dddd"""ccc!!cccnnnnnccc22ccc4444ddd	chr3:52725345-52725562(+)$1	217	178	213	13.8408
eeee[eeeee!!a[annnnna]a22eeeee]eeee	chr18:47340632-47340837(+)$1	205	133	168	12.8667
ddd[ccc"""eeeeennnnneeeee22ccc22ddd	chr2:21236210-21236472(-)$1	262	141	176	13.4692
""a!!dddd[eeeeennnnneeeee22dddd22a4	chr13:45911604-45911820(-)$1	216	155	190	12.3230
!eeeeeiiiiiiiiinnnnniiiiiiiii333eee	chr11:75115409-75115627(+)$1	218	106	141	14.1925
###bb[ccc!!cccooooooccc]ccc]bb4444d	chr1:45244016-45244229(+)$1	213	170	205	12.9222
ggggggggggg[cccnnnnnccc22gggggggFFF	chrX:135961301-135961505(-)$1	204	52	87	13.6274
d[ccc[ccc"""ccclllccc]ccc22ccc]dddd	chr2:21235115-21235340(-)$1	225	107	142	12.6981
::===========cccmmmmccc]===========	chr20:2634817-2635033(+)$1	216	175	210	12.6241
==========[cccqqqqqqqqccc==========	chr8:33370968-33371172(+)$1	204	38	73	12.1053
b[a!!ggggggg!!ccclllccc22ggggggg444	chr11:93466536-93466742(-)$1	206	141	176	12.6673
=========!!a[ccclllccc]a22=========	chr17:7809323-7809669(+)$1	346	199	234	16.2922
iiiiiiiii!!eeeeellleeeeeiiiiiiiii22	chr12:7076479-7076683(-)$1	204	38	73	13.1126
============[bbnnnnnbb]============	chr12:6619551-6619758(+)$1	207	17	52	16.6812
ccc!!eeeee!!bbannnnna]bb4444eeeeecc	chr6:133138361-133138573(+)$1	212	6	41	13.5463
eeggggggg####cccnnnnnccc333ggggggg:	chr19:3982430-3982647(-)$1	217	94	129	14.4530
==!!ccc"""eeeeemmmmeeeee4444ccc]===	chr7:98479297-98479508(+)$1	211	72	107	12.9705
===dddd[a[cccddddllldddd333ccc]a]dd	chr3:160232763-160232987(-)$1	224	88	123	12.5870
ggggggg####cccooooooccc4444ggggggg]	chr10:70514854-70515082(+)$1	228	35	70	16.0685
gg[ccc"""eeeeeooooooeeeee22ccc]gggg	chr12:57038757-57038979(-)$1	222	132	167	13.5923
dddd==========oooooo===============	chr8:33370934-33371141(+)$1	207	42	77	15.4867
gg[ccc$$$$$cccooooooccc4444ccc]gggg	chr9:128001647-128001871(-)$1	224	13	48	14.7647
ffffff"""a[cccooooooccc]a333ffffff2	chr18:47340585-47340789(+)$1	204	90	125	13.7253
ddddbbccc!!ddddoooooodddd22ccc333bb	chr4:119200332-119200542(+)$1	210	88	123	11.9372
ffff####eeeee[annnnnaeeeee4444fffff	chr2:234184528-234184732(+)$1	204	51	86	12.4921
h[==========[ddddllldddd22=========	chr17:7480117-7480353(+)$1	236	62	97	14.5726
cc[ffffff[a[cccnnnnncccaffffffccc]d	chr8:67834656-67834860(-)$1	204	159	194	12.7424
==========[cccqqqqqqqqccc==========	chr8:33370964-33371168(+)$1	204	42	77	12.1053
dd####eeeeeddddnnnnndddd333eeeee444	chr14:91592720-91592924(+)$1	204	124	159	13.8662
============[ccclllccc333==========	chr11:75111371-75111588(+)$1	217	22	57	16.2892
"==============oooooo==============	chr2:10586756-10586981(-)$1	225	19	54	16.4545

#otherMatches

#Seq PSSM
UCUCCUUUGUCCUGCAUGUGGCAGGCUGAUGGGGA	chr2:86362922-86363128(+)$1	206	136	171	13.6075
UUCAGAUGAUGAAUUUAACUGUUCAACUGCUGAAU	chr11:93466327-93466548(-)$1	221	83	118	11.9355
AAGCAGCAUGACAUGGGUCACAUGAUGAGGUGCAC	chr2:216286713-216286917(-)$1	204	13	48	12.0944
UUCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619524-6619742(+)$1	218	44	79	14.6225
AUACCCUGAAGUUUGUAACUCAAGCAGAAGGUGAG	chr2:21241805-21242066(-)$1	261	173	208	15.4337
GUGACAGAUGUGCUCAGUGUCUGCCACAUAUCUCA	chr15:25344579-25344819(+)$1	240	2	37	13.8833
UUCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619466-6619687(+)$1	221	102	137	14.6225
UUUAUUUGCUCUCCCUUGUUGGGUCUACAGAUUGG	chr2:21246382-21246621(-)$1	239	27	62	15.3483
GUCCACUCGUCGGGGUUGGCUGGUGAGAAGUGGGG	chr22:39709786-39709994(-)$1	208	32	67	11.3674
CCCCUGGGCUGGGCCAGUGGGGCCAAUGCCCAGGG	chr19:48259073-48259275(+)$1	202	101	136	18.2307
UUCUGGGAACCAGGUGAUGGAGUAUGUUCUGAGAA	chr18:47340704-47340907(+)$1	203	61	96	12.8667
AGUCUGAUUAUUUAGCAAGACUGAGGCUUGAGGGU	chr16:2204923-2205138(-)$1	215	86	121	15.0357
GCUCUACCACUUACCCUCAUGUGACCCUGGAGGCC	chr22:29729058-29729336(-)$1	278	241	276	13.0227
UUGCCCGCCUCGAGCUCCUCUGCUCCCGGCGGCCA	chr4:53578686-53578890(+)$1	204	113	148	12.1086
UUGGCCAUUUCAUAACUUUGGAAAUGUAAUGGUCA	chr12:49061197-49061410(-)$1	213	115	150	13.6848
GUGCAUCUGUCUUGUGUCUAUAUGCAGAUGAGGCA	chr2:216229576-216229807(-)$1	231	72	107	12.0969
AGUAAUUUACAAUCAUCGUCUGAAUAAUGAAUUAA	chr2:203156022-203156226(+)$1	204	163	198	17.2776
ACGGUAGGGCUGGGCACAAGCCACCUGAGCGCAAC	chr12:7076427-7076634(-)$1	207	87	122	13.0528
CGCGCGCUGUUUUUCUCGCUGACUUUCAGCGGGCG	chr3:169482673-169482888(-)$1	215	129	164	13.0490
UCCAUCGGCUAAGUGUCUUGUCACAAUGCUGACAC	chr16:71792205-71792416(-)$1	211	56	91	13.7809
AGUAAUUUACAAUCAUCGUCUGAAUAAUGAAUUAA	chr2:203156018-203156222(+)$1	204	167	202	17.2776
UGGCUGUUCUGGGACCUCAGUAGGGAAUGGCUAUU	chr12:49048130-49048346(-)$1	216	128	163	12.8654
AAUGAAUUUUGGAUCGCUAGGAUUUAGGAAUCUUU	chr17:74554825-74555032(+)$1	207	4	39	13.2628
GCUUUUUAUAUCUGGAUUUCCCAUUUAUUUGUAGG	chr3:52725345-52725562(+)$1	217	178	213	13.8408
UUCUGGGAACCAGGUGAUGGAGUAUGUUCUGAGAA	chr18:47340632-47340837(+)$1	205	133	168	12.8667
CCUCCAGAGAUCUAAAGAUGUUAGAGACUGUUAGG	chr2:21236210-21236472(-)$1	262	141	176	13.4692
CGCUUUCUGUCUGUCUUUGUGGCGGCCCAGAUUGA	chr13:45911604-45911820(-)$1	216	155	190	12.3230
CCUUGUCAGUGCCAUGUUCUGUGGUGCUGUGCACG	chr11:75115409-75115627(+)$1	218	106	141	14.1925
GUGGAGAGGUUUGGGUAGGGCCACCUUGUCGUUGU	chr1:45244016-45244229(+)$1	213	170	205	12.9222
GGGCUAUUAUAAUUAAAAUAUAAGCUAUGAUGAAU	chrX:135961301-135961505(-)$1	204	52	87	13.6274
CUGUCUUGUCAGAGGGAUCCUAACACUGGCCGGCU	chr2:21235115-21235340(-)$1	225	107	142	12.6981
CAGCUGAGGGAUGUUAGAGUUGAUCGUCCUUCAGC	chr20:2634817-2635033(+)$1	216	175	210	12.6241
caugagcgugaugauuggguguucauacgcuugug	chr8:33370968-33371172(+)$1	204	38	73	12.1053
CGUUAUGAAAAACCAGAUAAUCUACUUUUUUACCU	chr11:93466536-93466742(-)$1	206	141	176	12.6673
CAGGGGAGGGGCGUUGAAGCAAGGAGCCUCUCCUG	chr17:7809323-7809669(+)$1	346	199	234	16.2922
GUAAGGCCAGAUCAAUAGCAUUGGUGGCCUUGCCU	chr12:7076479-7076683(-)$1	204	38	73	13.1126
UUCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619551-6619758(+)$1	207	17	52	16.6812
AUGAAUCUGCUUACCUGAUUGUGUUUGUGCAGACA	chr6:133138361-133138573(+)$1	212	6	41	13.5463
AUUUCUUCACUUUGACCAGAUGUCUACUGAAGAAA	chr19:3982430-3982647(-)$1	217	94	129	14.4530
guguuuguguguguguguauaugCUUGUCAGUGCA	chr7:98479297-98479508(+)$1	211	72	107	12.9705
UGUGUGUGUGCUUGUGGUGGCUAUGGAAAGGGGGC	chr3:160232763-160232987(-)$1	224	88	123	12.5870
UUUAAAAGAACUCUAUCUGAAGAAAUAUUUUAAAA	chr10:70514854-70515082(+)$1	228	35	70	16.0685
CUGAGUUUGCUGAAGCCACAUUUAGGUACUGAGAA	chr12:57038757-57038979(-)$1	222	132	167	13.5923
UGUCAACUAUAAGAUgauccuuuuguaguucauga	chr8:33370934-33371141(+)$1	207	42	77	15.4867
GGUUAAACUAUGUGACAAUACACUUAAUUAUCUUU	chr9:128001647-128001871(-)$1	224	13	48	14.7647
GAGGCUGGACGGGAGGGAGGUCUAGGGAGGCCUCU	chr18:47340585-47340789(+)$1	204	90	125	13.7253
GCAAAGCUGUCACCAUUUAAUUGGUAUCAGAUUCU	chr4:119200332-119200542(+)$1	210	88	123	11.9372
ACACAGGAGACUGACGAGUGGCAGUCAUGGGUGUG	chr2:234184528-234184732(+)$1	204	51	86	12.4921
GUGCAGCCCUGGCAGUGUCCUACUUCCCAGGGCUG	chr17:7480117-7480353(+)$1	236	62	97	14.5726
ACUGUACAUUGAUUAAUUACUGACAUGUAUGUAAG	chr8:67834656-67834860(-)$1	204	159	194	12.7424
caugagcgugaugauuggguguucauacgcuugug	chr8:33370964-33371168(+)$1	204	42	77	12.1053
GUGACAAGGGACACAGAGCUUGUGACCUCCCUACA	chr14:91592720-91592924(+)$1	204	124	159	13.8662
UAGAGCAGUUUCUUGUUUUGCAUGUGGAACUGUUU	chr11:75111371-75111588(+)$1	217	22	57	16.2892
UUUAUGACAGGCCCGUCACCCUGGGCCUGUCAUAG	chr2:10586756-10586981(-)$1	225	19	54	16.4545

#DB
((((.((.(.(((((.....)))))).)).)))))	chr2:86362922-86363128(+)$1	1	136	171	13.6075
(((((....(((((......)))))....))))))	chr11:93466327-93466548(-)$1	1	83	118	11.9355
..(((.(....((((.....))))....).))).(	chr2:216286713-216286917(-)$1	1	13	48	12.0944
.(((((((((((.((.....)).))))))))))))	chr12:6619524-6619742(+)$1	1	44	79	14.6225
(((((((...(((((.....)))))...)))...)	chr2:21241805-21242066(-)$1	1	173	208	15.4337
((...(((((((..(((...)))...)))))))..	chr15:25344579-25344819(+)$1	1	2	37	13.8833
.(((((((((((.((.....)).))))))))))))	chr12:6619466-6619687(+)$1	1	102	137	14.6225
((.(((((....(((.....)))....))))).))	chr2:21246382-21246621(-)$1	1	27	62	15.3483
.((((((((((((......)))))))...))))).	chr22:39709786-39709994(-)$1	1	32	67	11.3674
(((((((((..((((.....))))...))))))))	chr19:48259073-48259275(+)$1	1	101	136	18.2307
((((.(((((..(.(.....).)..))))).))))	chr18:47340704-47340907(+)$1	1	61	96	12.8667
(.(((.(...(((((.....)))))...).))).)	chr16:2204923-2205138(-)$1	1	86	121	15.0357
((.((.(((.((((......))))...))))))))	chr22:29729058-29729336(-)$1	1	241	276	13.0227
(((.(((((..((((......))))..))))).))	chr4:53578686-53578890(+)$1	1	113	148	12.1086
(((((((((.(((..(....)..))).))))))))	chr12:49061197-49061410(-)$1	1	115	150	13.6848
.(.(((((((..(((....))).)))))))).)))	chr2:216229576-216229807(-)$1	1	72	107	12.0969
..(((((((...(((.....)))....))))))).	chr2:203156022-203156226(+)$1	1	163	198	17.2776
(.(((.(.(((((((....))).)...))).).))	chr12:7076427-7076634(-)$1	1	87	122	13.0528
(((.(((((....((.....))....))))).)))	chr3:169482673-169482888(-)$1	1	129	164	13.0490
....(((((...(((......)))...))))))))	chr16:71792205-71792416(-)$1	1	56	91	13.7809
..(((((((...(((.....)))....))))))).	chr2:203156018-203156222(+)$1	1	167	202	17.2776
((((((((((...((....))..))))))))))..	chr12:49048130-49048346(-)$1	1	128	163	12.8654
((.((.(((((((((.....))))))))).)))))	chr17:74554825-74555032(+)$1	1	4	39	13.2628
((((...(((..(((.....)))..)))....)))	chr3:52725345-52725562(+)$1	1	178	213	13.8408
((((.(((((..(.(.....).)..))))).))))	chr18:47340632-47340837(+)$1	1	133	168	12.8667
(((.(((...(((((.....)))))..)))..)))	chr2:21236210-21236472(-)$1	1	141	176	13.4692
..(..((((.(((((.....)))))..))))..).	chr13:45911604-45911820(-)$1	1	155	190	12.3230
.((((((((((((((.....)))))))))...)))	chr11:75115409-75115627(+)$1	1	106	141	14.1925
...((.(((..(((......))).))).))....)	chr1:45244016-45244229(+)$1	1	170	205	12.9222
))))(((((((.(((.....)))..))))))))))	chrX:135961301-135961505(-)$1	1	52	87	13.6274
(.(((.(((...(((...))).)))..))).))))	chr2:21235115-21235340(-)$1	1	107	142	12.6981
..((((((((((((((....))).)))))))))))	chr20:2634817-2635033(+)$1	1	175	210	12.6241
((((((((((.(((........)))))))))))))	chr8:33370968-33371172(+)$1	1	38	73	12.1053
(.(..(((((((..(((...)))..)))))))...	chr11:93466536-93466742(-)$1	1	141	176	12.6673
(((((((((..(.(((...))).)..)))))))))	chr17:7809323-7809669(+)$1	1	199	234	16.2922
(((((((((..(((((...))))))))))))))..	chr12:7076479-7076683(-)$1	1	38	73	13.1126
((((((((((((.((.....)).))))))))))))	chr12:6619551-6619758(+)$1	1	17	52	16.6812
(((..(((((..(((.....).))....)))))))	chr6:133138361-133138573(+)$1	1	6	41	13.5463
))(((((((....(((.....)))...))))))).	chr19:3982430-3982647(-)$1	1	94	129	14.4530
((..(((...(((((....)))))....))).)))	chr7:98479297-98479508(+)$1	1	72	107	12.9705
)))((((.(.(((((((...))))...))).).))	chr3:160232763-160232987(-)$1	1	88	123	12.5870
(((((((....(((......)))....))))))).	chr10:70514854-70515082(+)$1	1	35	70	16.0685
((.(((...(((((......)))))..))).))))	chr12:57038757-57038979(-)$1	1	132	167	13.5923
))))((((((((((......))))))))))(((((	chr8:33370934-33371141(+)$1	1	42	77	15.4867
((.(((.....(((......)))....))).))))	chr9:128001647-128001871(-)$1	1	13	48	14.7647
((((((...(.(((......))).)...)))))).	chr18:47340585-47340789(+)$1	1	90	125	13.7253
(((((((((..((((......))))..)))...))	chr4:119200332-119200542(+)$1	1	88	123	11.9372
((((....(((((.(.....))))))....)))))	chr2:234184528-234184732(+)$1	1	51	86	12.4921
(.((((((((((.((((...))))..)))))))))	chr17:7480117-7480353(+)$1	1	62	97	14.5726
((.((((((.(.(((.....))))))))))))).)	chr8:67834656-67834860(-)$1	1	159	194	12.7424
((((((((((.(((........)))))))))))))	chr8:33370964-33371168(+)$1	1	42	77	12.1053
((....(((((((((.....))))...)))))...	chr14:91592720-91592924(+)$1	1	124	159	13.8662
((((((((((((.(((...)))...))))))))))	chr11:75111371-75111588(+)$1	1	22	57	16.2892
.((((((((((((((......))))))))))))))	chr2:10586756-10586981(-)$1	1	19	54	16.4545

#PSSM
d : 0.18	= : 0.18	g : 0.11	f : 0.07	: : 0.07	e : 0.07	" : 0.07	c : 0.05	i : 0.03	[ : 0.03	$ : 0.01	! : 0.01	# : 0.01	b : 0.01	h : 0.01	
= : 0.24	d : 0.16	g : 0.09	e : 0.09	[ : 0.09	f : 0.07	c : 0.05	" : 0.05	i : 0.03	: : 0.03	a : 0.01	$ : 0.01	# : 0.01	
= : 0.25	[ : 0.12	g : 0.11	d : 0.11	c : 0.09	e : 0.07	f : 0.05	i : 0.03	a : 0.03	# : 0.03	" : 0.01	$ : 0.01	! : 0.01	
= : 0.24	g : 0.12	c : 0.11	e : 0.09	f : 0.07	d : 0.07	! : 0.07	b : 0.05	[ : 0.05	i : 0.03	" : 0.01	$ : 0.01	# : 0.01	
= : 0.25	c : 0.16	e : 0.11	g : 0.11	b : 0.07	[ : 0.05	f : 0.05	! : 0.05	" : 0.03	# : 0.03	i : 0.01	d : 0.01	
= : 0.25	e : 0.16	g : 0.14	[ : 0.12	c : 0.09	# : 0.05	b : 0.03	d : 0.03	f : 0.03	" : 0.01	i : 0.01	
= : 0.25	g : 0.16	e : 0.14	c : 0.12	a : 0.05	i : 0.05	" : 0.05	# : 0.03	d : 0.03	b : 0.01	$ : 0.01	f : 0.01	
= : 0.25	g : 0.14	e : 0.14	" : 0.11	c : 0.09	# : 0.07	[ : 0.05	i : 0.05	d : 0.01	$ : 0.01	f : 0.01	
= : 0.25	g : 0.14	e : 0.14	" : 0.11	c : 0.11	# : 0.07	i : 0.05	a : 0.03	d : 0.01	$ : 0.01	f : 0.01	
= : 0.20	" : 0.14	e : 0.12	[ : 0.11	! : 0.11	# : 0.09	g : 0.09	c : 0.03	i : 0.03	$ : 0.01	a : 0.01	
! : 0.20	e : 0.18	= : 0.14	# : 0.09	" : 0.09	g : 0.07	c : 0.05	[ : 0.05	i : 0.03	d : 0.01	$ : 0.01	a : 0.01	
e : 0.18	= : 0.14	c : 0.14	d : 0.11	! : 0.09	" : 0.09	g : 0.05	# : 0.05	a : 0.03	i : 0.03	[ : 0.03	
c : 0.33	e : 0.18	d : 0.11	[ : 0.11	= : 0.05	! : 0.03	a : 0.03	# : 0.03	i : 0.03	g : 0.01	" : 0.01	b : 0.01	
c : 0.37	e : 0.16	d : 0.14	b : 0.11	! : 0.05	[ : 0.05	i : 0.03	= : 0.03	o : 0.01	
c : 0.29	o : 0.16	e : 0.12	d : 0.12	b : 0.09	a : 0.07	i : 0.03	q : 0.03	! : 0.01	= : 0.01	
n : 0.44	o : 0.24	c : 0.11	m : 0.07	q : 0.03	d : 0.03	a : 0.01	l : 0.01	e : 0.01	
n : 0.46	o : 0.24	m : 0.11	l : 0.07	c : 0.03	q : 0.03	d : 0.03	
n : 0.46	o : 0.24	l : 0.14	m : 0.11	q : 0.03	
n : 0.46	o : 0.24	l : 0.12	m : 0.11	q : 0.03	c : 0.01	
n : 0.46	o : 0.22	c : 0.09	l : 0.07	m : 0.03	q : 0.03	e : 0.03	g : 0.01	b : 0.01	
c : 0.33	e : 0.16	d : 0.11	b : 0.09	a : 0.09	o : 0.07	i : 0.03	q : 0.03	g : 0.01	n : 0.01	= : 0.01	
c : 0.35	e : 0.18	d : 0.14	b : 0.07	] : 0.07	2 : 0.03	i : 0.03	q : 0.03	= : 0.03	g : 0.01	
c : 0.33	e : 0.18	d : 0.14	] : 0.11	a : 0.03	2 : 0.03	i : 0.03	= : 0.03	g : 0.01	4 : 0.01	b : 0.01	3 : 0.01	
e : 0.18	d : 0.14	= : 0.11	4 : 0.11	c : 0.11	2 : 0.09	a : 0.05	] : 0.05	3 : 0.03	g : 0.03	i : 0.03	b : 0.01	
4 : 0.16	3 : 0.16	e : 0.14	= : 0.12	2 : 0.12	c : 0.09	i : 0.05	g : 0.03	d : 0.03	a : 0.01	f : 0.01	
3 : 0.20	4 : 0.18	= : 0.18	2 : 0.14	g : 0.07	e : 0.05	c : 0.05	i : 0.05	a : 0.01	f : 0.01	
= : 0.22	3 : 0.20	4 : 0.18	2 : 0.11	g : 0.07	e : 0.05	i : 0.05	] : 0.03	c : 0.03	f : 0.01	
= : 0.25	c : 0.16	g : 0.14	e : 0.12	4 : 0.09	3 : 0.07	i : 0.05	b : 0.01	d : 0.01	] : 0.01	f : 0.01	
= : 0.25	c : 0.18	g : 0.14	e : 0.14	4 : 0.05	i : 0.05	b : 0.03	a : 0.03	f : 0.03	3 : 0.01	d : 0.01	
= : 0.25	c : 0.18	e : 0.16	g : 0.14	] : 0.07	f : 0.05	4 : 0.03	d : 0.01	3 : 0.01	b : 0.01	i : 0.01	
= : 0.25	g : 0.12	e : 0.12	] : 0.12	c : 0.09	f : 0.05	i : 0.03	b : 0.03	4 : 0.03	3 : 0.03	a : 0.01	2 : 0.01	d : 0.01	
= : 0.25	g : 0.16	e : 0.14	f : 0.05	c : 0.05	3 : 0.05	] : 0.05	i : 0.03	b : 0.03	a : 0.03	4 : 0.03	2 : 0.03	d : 0.01	
= : 0.27	g : 0.12	e : 0.11	c : 0.09	f : 0.07	] : 0.07	d : 0.07	4 : 0.05	i : 0.03	3 : 0.03	2 : 0.01	F : 0.01	
= : 0.25	d : 0.12	g : 0.11	e : 0.09	f : 0.07	c : 0.07	4 : 0.05	3 : 0.03	] : 0.03	2 : 0.03	i : 0.01	: : 0.01	a : 0.01	F : 0.01	b : 0.01	
= : 0.22	d : 0.16	e : 0.11	] : 0.07	c : 0.07	f : 0.05	g : 0.05	2 : 0.05	4 : 0.05	B : 0.03	i : 0.01	3 : 0.01	F : 0.01	: : 0.01	b : 0.01	

#score	747.6065947543201
#seq	54
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_UTR_m1_run1.txt

#BEAR
eeee:::==========oooooo================	chr3:184045635-184045880(+)$1	245	85	124	13.1852
!!dddd"""eeeeeaooooooa]eeeee4444dddd333	chr5:140998385-140998634(-)$1	249	89	128	13.4214
[dddd[a[eeeee[a[aooooooa]aeeeee]a]dddd2	chr9:35072394-35072700(-)$1	306	88	127	13.9693
[bb[ggggggg"""ddddnnnnndddd22ggggggg]bb	chr1:62902740-62903024(+)$1	284	4	43	12.5992
####bb####dddd!!annnnna22dddd333bb333ee	chr9:134348890-134349169(+)$1	279	89	128	13.0288
eeeebb[============oooooo============bb	chr20:30327152-30327453(+)$1	301	257	296	13.5770
::::ccc[ccc!!acccooooooccc]a22ccc]ccccc	chr3:184052732-184053014(+)$1	282	74	113	12.2427
ddd[ccc[ccc"""ddddmmmmdddd22ccc22cccddd	chr7:74072245-74072496(+)$1	251	30	69	11.4165
!!a[ggggggg[eeeeennnnneeeee333ggggggga2	chr1:220267669-220267924(+)$1	255	54	93	12.8016
fff!!bb[dddd[ddddoooooodddddddd]bb]ffff	chr12:98909346-98909604(+)$1	258	34	73	14.9215
"""ccc!!bb[ddddaccclllccc]a]ddddbb22ccc	chr19:30433374-30433662(+)$1	288	74	113	12.3018
b####iiiiiiiiicccooooooccc]iiiiiiiii22b	chr3:184019295-184019535(+)$1	240	43	82	15.4302
Fa[ccc"""eeeeeddddnnnnndddd]eeeee22ccc]	chr3:58139084-58139360(+)$1	276	111	150	11.9554
$ffffff[ccc"""eeeeeooooooeeeee]ccc]ffff	chr17:79875942-79876197(-)$1	255	95	134	11.7140
""a[ccc[bb[gggggggnnnnnggggggg22bb]ccc]	chr5:138163172-138163448(+)$1	276	61	100	12.4649
ggggbb!!gggggggooooooggggggg4444bb22ggg	chr3:196230137-196230392(-)$1	255	36	75	13.1487
!eeeee[dddd[ccc[bboooooobb22cccddddeeee	chr17:38145891-38146202(+)$1	311	141	180	12.0249
####ccc[a####dddd[bboooooobb]dddd4444a]	chr3:49049743-49049984(+)$1	241	20	59	12.0643
dd[dddd[a[bb!!cccooooooccc22bb22a]ddddd	chr19:46857058-46857342(+)$1	284	165	204	13.7078
!bb[ccc[dddd!!ccclllcccdddd]ccc]bb22bb]	chr17:65713957-65714244(+)$1	287	151	190	12.6480
iiiiiii[a[gggggggnnnnnggggggg]a]iiiiiii	chr19:13265096-13265331(+)$1	235	136	175	12.5487
ff[ccc[bb[dddd[cccooooooccc]ddddbb333cc	chr2:198364446-198364673(-)$1	227	67	106	14.0766
"a!!bb[ccc!!ddddrrrrrrrrrdddd]cccbb22a3	chr3:195776031-195776298(-)$1	267	7	46	11.9536
""==========[ddddmmmmdddd333==========2	chr2:153512646-153512900(-)$1	254	76	115	13.2544
[adddd!!ccc[ccccccnnnnnccc]cccccc22dddd	chr1:6659307-6659545(-)$1	238	128	167	12.2914
d$$$$$dddd[a[ddddoooooodddd]a]dddd333dd	chr5:112214016-112214270(-)$1	254	33	72	14.8793
ggggggg[ccc[cccrrrrrrrrrccc]ccc]ggggggg	chr19:10260118-10260378(-)$1	260	160	199	12.7812
[ccc[bb!!ddddddddoooooodddd333dddd]bb]c	chr19:8550736-8550991(+)$1	255	114	153	15.2807
eeeee"""dddd[ddddnnnnndddd]dddd]eeeee]e	chr10:70715833-70716094(+)$1	261	69	108	11.7841
[dddd[gggggggddddoooooodddd]ggggggg]ddd	chr16:84778741-84778985(+)$1	244	91	130	15.2194
d"""eeeee[a[eeeeeooooooeeeee]a]eeeee333	chrX:153588823-153589048(-)$1	225	101	140	14.5347
ffffffffff"""ddddooooooddddffffff>>>>>>	chrX:53449429-53449720(-)$1	291	78	117	13.3514
fbbccc!!eeeeeddddoooooodddd22eeeee22ccc	chrX:153588025-153588256(-)$1	231	182	221	14.8886
gg"""eeeee####cccooooooccc666666eeeeegg	chr2:178087969-178088233(+)$1	264	191	230	12.9471
iiiiiii####ffffffooooooffffffiiiiiiiiib	chr17:76220718-76221008(+)$1	290	163	202	13.7159
ccc[ffffff[ddddcccooooooccc]dddd333ffff	chr7:99691817-99692051(-)$1	234	179	218	13.6208
ddddbb[iiiiiiiiiooooooiiiiiiiii]bb00000	chr2:10588146-10588412(-)$1	266	66	105	12.1943
ffffffdddd[dddd[aooooooa]dddd333dddd444	chr19:49995025-49995236(+)$1	211	82	121	14.2868
!!eeeee[dddd[cccooooooccc]dddd22eeeee22	chr3:184020388-184020630(+)$1	242	151	190	13.9255
cbb[ccc[a[cccrrrrrrrrrccc]a]ccc]bb]ccc]	chr1:220219660-220219883(-)$1	223	18	57	11.8338
eee!!eeeee[ffffffooooooffffff22eeeee444	chr11:9406096-9406364(+)$1	268	38	77	12.5230
[eeeeeccc[a!!a[cccmmmmcccaa]ccc]eeeeedd	chr6:31749603-31749829(-)$1	226	87	126	11.6222
ccc####eeeee"""ddddoooooodddd333eeeeecc	chr17:74733226-74733508(-)$1	282	242	281	12.6626
$$a[bb!!ccc!!ddddoooooodddd]ccc]bb]a444	chr19:41782038-41782287(+)$1	249	178	217	17.8702
[bb[bb$$$$$a[ddddoooooodddd]abb]bb]eeee	chr17:1587973-1588194(-)$1	221	85	124	15.1077
ddd[dddd####eeeeeooooooeeeee4444dddd000	chrX:153582445-153582687(-)$1	242	41	80	12.8936
ggggggg[dddd!!cccooooooccc]dddd]ggggggg	chr3:138553443-138553727(-)$1	284	135	174	15.7487
::eeeee!!ccc[ddddoooooodddd22ccc22eeeee	chr10:105727047-105727361(+)$1	314	129	168	13.2864
"""ccc[bb"""cccooooooccc]bb]ccc333hhhhh	chr11:57585812-57586070(+)$1	258	116	155	12.8813
iiiiii[ffffff[cccoooooocccffffff4444iii	chr3:184046355-184046571(+)$1	216	123	162	14.3237
"""dddd!!dddd[aooooooa]dddd333dddd]gggg	chrX:153586536-153586747(-)$1	211	63	102	14.2719
!!eeeeeccc[bb[a[aooooooaa]bbccc]eeeeedd	chrX:153581427-153581662(-)$1	235	98	137	13.8924
f[ccc"""ggggggg[aooooooa]ggggggg333ccc]	chr8:124408487-124408774(-)$1	287	57	96	15.7492
b[a[ffffff"""cccooooooccc333ffffff]abb:	chr1:894494-894737(-)$1	243	120	159	12.9343
iiiiiiiii####ddddoooooodddd22iiiiiiiii:	chr5:126112899-126113122(+)$1	223	149	188	15.7948
ggggggbbccc[a[cccooooooccc]accc]bb]gggg	chr22:19711730-19712033(+)$1	303	8	47	15.6650

#otherMatches

#Seq PSSM
AGCAUAUGGGGCAGCUGCUGCACCAGCUGCUCUGUGCUG	chr3:184045635-184045880(+)$1	245	85	124	13.1852
GGGCGCGGAGCUGCCAGGCGGGAGCGGCGUAGGCGCGGG	chr5:140998385-140998634(-)$1	249	89	128	13.4214
AAGCGUCUGCGACCGUCGUUUGAgucgucgcugccgcug	chr9:35072394-35072700(-)$1	306	88	127	13.9693
GGCGGAGUGCUAAAGACCCUAGCGGUUCAGGCGUUCGGC	chr1:62902740-62903024(+)$1	284	4	43	12.5992
AGAAAGAAAAGUGACCCCCAUCGACUCACCCCCUGUGUG	chr9:134348890-134349169(+)$1	279	89	128	13.0288
UGUCGGCUAAUAACGGUAACGAUAAUUAUUGUUAUUACC	chr20:30327152-30327453(+)$1	301	257	296	13.5770
GUGAUGUGUCUGAACUAAUAAAGUGGCUGAAGAGGCAGG	chr3:184052732-184053014(+)$1	282	74	113	12.2427
CGCUCGCCAGCUCCCCUCAGCCGAGGCUGCUccgcggcg	chr7:74072245-74072496(+)$1	251	30	69	11.4165
AAUAGUGGCAGAUACCGGGACACGGUGCUGCUGCCGCAG	chr1:220267669-220267924(+)$1	255	54	93	12.8016
CGCCUCCUGCCUGUAGUGUGUGGGCUGGGGUUGGUGCGA	chr12:98909346-98909604(+)$1	258	34	73	14.9215
CCCGUCAUGGAGGCGCCCACCGUGGAGACGCCCCCCGAC	chr19:30433374-30433662(+)$1	288	74	113	12.3018
CAUCAUCUCCGUUUUGGCCAUGACCAUGAGUGGGGAGCG	chr3:184019295-184019535(+)$1	240	43	82	15.4302
CGUCCGGUUUGUGCCCCAGGAGAUGGGCGUGCACACGGU	chr3:58139084-58139360(+)$1	276	111	150	11.9554
AGGGGUGGGUGGGGGCGGGGCCCAUCUUGCGCAUGCGCC	chr17:79875942-79876197(-)$1	255	95	134	11.7140
AGCGAGGAGCGCUUUAGGCCUUCCCUGGAGGAGCGUCUG	chr5:138163172-138163448(+)$1	276	61	100	12.4649
AGCCGCAGCCGCGGUGUUCAUGCCGCGGAGCAGCCAGGC	chr3:196230137-196230392(-)$1	255	36	75	13.1487
ACGCAGACGGGCAGGCCACCCUGUUGAACCUCCUGCUGC	chr17:38145891-38146202(+)$1	311	141	180	12.0249
UUCUAGAGAAUUACCUUAUCAGUGCAGGAGAGGAUUGUG	chr3:49049743-49049984(+)$1	241	20	59	12.0643
CCGCGCUGCGAGACUACGAGACGGUGAGCUGGGGAGUGG	chr19:46857058-46857342(+)$1	284	165	204	13.7078
AGCGCCGGGCCUGAAGGACUCCUAGGCGUGGAGCAGAGC	chr17:65713957-65714244(+)$1	287	151	190	12.6480
GGGUGUGGGGCCUGGGAGGAGGUCCUGGGGCGUGCACCC	chr19:13265096-13265331(+)$1	235	136	175	12.5487
GAGGGGACACGGGCUCAUUGCGGUGUGCGCCCUGCACUC	chr2:198364446-198364673(-)$1	227	67	106	14.0766
UGUUAGCUCUUUGAAUGUUCUUGAAAUUUUAGACUUUCU	chr3:195776031-195776298(-)$1	267	7	46	11.9536
AAUAAAUUAUACCAAAUAUAUGUUUACAGUAUGAUUUAA	chr2:153512646-153512900(-)$1	254	76	115	13.2544
GAGUACCACAGCUCCUCUGUGCUGGACGGACUGCUGUAC	chr1:6659307-6659545(-)$1	238	128	167	12.2914
GAAAAGAUGUAUGUUGCUAUCCUGCAGGaaauauaaacu	chr5:112214016-112214270(-)$1	254	33	72	14.8793
GUGGAUGAAUGUGAGGACAUGCAGCUUUCAUAUAUCCAC	chr19:10260118-10260378(-)$1	260	160	199	12.7812
UGGCGUGGAGCGCAUGGGCCCUGCCAUCGAGCGCAUGGG	chr19:8550736-8550991(+)$1	255	114	153	15.2807
GUGGACCCAGGGUGGGGAACUACCUCUUCCUCUCCACGC	chr10:70715833-70716094(+)$1	261	69	108	11.7841
AUUUUGGUCAGUCCUGCUUCCCUGCAGAGGCUGGCAGAG	chr16:84778741-84778985(+)$1	244	91	130	15.2194
GUUUGGGCCGGGGCUGCAGGGAGGCAGUGCGGGCUCCCC	chrX:153588823-153589048(-)$1	225	101	140	14.5347
CCCGGCUUGCACUGCGGCGUUUCCCGCGCGGGCUACCUC	chrX:53449429-53449720(-)$1	291	78	117	13.3514
UGGCAGACGGGGUGGGUGGGGUGGCCCGGGCUCCUCCUG	chrX:153588025-153588256(-)$1	231	182	221	14.8886
AGAUUUAACUGAUUUUGUUAAACCAAUUUGUAAGUUACU	chr2:178087969-178088233(+)$1	264	191	230	12.9471
AGCGUCCUGGCAGAGACGCAGUUGUCUCUGGGCGCUUGC	chr17:76220718-76221008(+)$1	290	163	202	13.7159
AGGCUUGGGCUAGUAAGGAUGCCACCUAUACUUCUGCCC	chr7:99691817-99692051(-)$1	234	179	218	13.6208
gggcgcggcgggggcggccgAGCGCUCCUGCGGCUGCGA	chr2:10588146-10588412(-)$1	266	66	105	12.1943
UGCCCUUCCUCCAUUGUUGCCCUGGAAUGUACGGGACCC	chr19:49995025-49995236(+)$1	211	82	121	14.2868
GAGUAUGAGGACCUGACAGAGAUCAUGUCCAAUGUACAG	chr3:184020388-184020630(+)$1	242	151	190	13.9255
gcggcgcaggggcggagcgaaggcugcggcggcgucggG	chr1:220219660-220219883(-)$1	223	18	57	11.8338
GGAGCAUCUCCCGCCUCCACGCCGAGGCGAAGAGGUUCU	chr11:9406096-9406364(+)$1	268	38	77	12.5230
GCACCUGUGGCAGGACCCUGAUGGGCGGUACUGGGUGAG	chr6:31749603-31749829(-)$1	226	87	126	11.6222
GGCUCCGGGCCGCCACUCAGAGCUAUGAGCUACGGCCGC	chr17:74733226-74733508(-)$1	282	242	281	12.6626
AGAGAAGGGGAAGGGACAGAGAAGUCCAUCCAUUGUAAU	chr19:41782038-41782287(+)$1	249	178	217	17.8702
GCGGGGAAAGCGGCCUCUUGUGUGAGGGCCUGUGGGGUG	chr17:1587973-1588194(-)$1	221	85	124	15.1077
GCCCUCAGGCAAGGUGGCGCAGCCCACCAUCACUGACAA	chrX:153582445-153582687(-)$1	242	41	80	12.8936
GCUGCUGACUGCGCACUUGGAAUAGUAGCAGGCGGCGGC	chr3:138553443-138553727(-)$1	284	135	174	15.7487
CCGCUCGGACCCGUCGGAUCAGGCCGGGUGGGAGCGAGC	chr10:105727047-105727361(+)$1	314	129	168	13.2864
UCUGUGUCAUUUCUUCACUUCAAGCUGUUAUUUCUUCCC	chr11:57585812-57586070(+)$1	258	116	155	12.8813
CUACCUAGCGGAACUGGUAACACCCAUUCUGCAGGAAGG	chr3:184046355-184046571(+)$1	216	123	162	14.3237
CAAGGUGAAGGCCAGUGGCCCCGGGCUCAACACCACUGG	chrX:153586536-153586747(-)$1	211	63	102	14.2719
UUCGUGCCCAAGGAGACGGGGGAGCACCUGGUGCAUGUG	chrX:153581427-153581662(-)$1	235	98	137	13.8924
UGCGGCCGCUGGCGCGGAGCUUGUGGCGCCAGAAUUCGG	chr8:124408487-124408774(-)$1	287	57	96	15.7492
GCAGCUGCGGGGAGCCGCAAGAGGUAAGCCGCGGGUCCG	chr1:894494-894737(-)$1	243	120	159	12.9343
CCAGGUGCUUCUCCGUUCCUCUAAACGCCAGCGUCUGGA	chr5:126112899-126113122(+)$1	223	149	188	15.7948
CGCGGCCGCCUGCUGCCCUAUCUGGCCGAGGACGAGCUG	chr22:19711730-19712033(+)$1	303	8	47	15.6650

#DB
))))...((((((((((......))))))))))((((((	chr3:184045635-184045880(+)$1	1	85	124	13.1852
..((((...((((((......).)))))....))))...	chr5:140998385-140998634(-)$1	1	89	128	13.4214
.((((.(.(((((.(.(......).)))))).).)))).	chr9:35072394-35072700(-)$1	1	88	127	13.9693
.((.(((((((...((((.....))))..))))))).))	chr1:62902740-62903024(+)$1	1	4	43	12.5992
....((....((((..(.....)..))))...))...))	chr9:134348890-134349169(+)$1	1	89	128	13.0288
))))((.((((((((((((......))))))))))))))	chr20:30327152-30327453(+)$1	1	257	296	13.5770
....(((.(((..((((......))).)..))).)))((	chr3:184052732-184053014(+)$1	1	74	113	12.2427
(((.(((.(((...((((....))))..)))..))))))	chr7:74072245-74072496(+)$1	1	30	69	11.4165
..(.(((((((.(((((.....)))))...)))))))).	chr1:220267669-220267924(+)$1	1	54	93	12.8016
(((..((.((((.((((......)))))))).)).))))	chr12:98909346-98909604(+)$1	1	34	73	14.9215
...(((..((.((((((((...))).).))))))..)))	chr19:30433374-30433662(+)$1	1	74	113	12.3018
(....((((((((((((......))).)))))))))..)	chr3:184019295-184019535(+)$1	1	43	82	15.4302
)(.(((...(((((((((.....)))).)))))..))).	chr3:58139084-58139360(+)$1	1	111	150	11.9554
.((((((.(((...(((((......))))).))).))))	chr17:79875942-79876197(-)$1	1	95	134	11.7140
..(.(((.((.(((((((.....)))))))..)).))).	chr5:138163172-138163448(+)$1	1	61	100	12.4649
((((((..(((((((......)))))))....))..)))	chr3:196230137-196230392(-)$1	1	36	75	13.1487
.(((((.((((.(((.((......))..)))))))))))	chr17:38145891-38146202(+)$1	1	141	180	12.0249
....(((.(....((((.((......)).))))....).	chr3:49049743-49049984(+)$1	1	20	59	12.0643
((.((((.(.((..(((......)))..))..).)))))	chr19:46857058-46857342(+)$1	1	165	204	13.7078
.((.(((.((((..(((...))))))).))).))..)).	chr17:65713957-65714244(+)$1	1	151	190	12.6480
(((((((.(.(((((((.....))))))).).)))))))	chr19:13265096-13265331(+)$1	1	136	175	12.5487
((.(((.((.((((.(((......))).))))))...))	chr2:198364446-198364673(-)$1	1	67	106	14.0766
.(..((.(((..((((.........)))).)))))..).	chr3:195776031-195776298(-)$1	1	7	46	11.9536
..((((((((((.((((....))))...)))))))))).	chr2:153512646-153512900(-)$1	1	76	115	13.2544
.(((((..(((.((((((.....))).))))))..))))	chr1:6659307-6659545(-)$1	1	128	167	12.2914
(.....((((.(.((((......)))).).))))...))	chr5:112214016-112214270(-)$1	1	33	72	14.8793
(((((((.(((.(((.........))).))).)))))))	chr19:10260118-10260378(-)$1	1	160	199	12.7812
.(((.((..((((((((......))))...)))).)).)	chr19:8550736-8550991(+)$1	1	114	153	15.2807
(((((...((((.((((.....)))).)))).))))).)	chr10:70715833-70716094(+)$1	1	69	108	11.7841
.((((.(((((((((((......)))).))))))).)))	chr16:84778741-84778985(+)$1	1	91	130	15.2194
(...(((((.(.(((((......))))).).)))))...	chrX:153588823-153589048(-)$1	1	101	140	14.5347
((((((((((...((((......))))))))))......	chrX:53449429-53449720(-)$1	1	78	117	13.3514
((((((..(((((((((......))))..)))))..)))	chrX:153588025-153588256(-)$1	1	182	221	14.8886
((...(((((....(((......)))......)))))))	chr2:178087969-178088233(+)$1	1	191	230	12.9471
(((((((....((((((......))))))))))))))))	chr17:76220718-76221008(+)$1	1	163	202	13.7159
(((.((((((.(((((((......))).))))...))))	chr7:99691817-99692051(-)$1	1	179	218	13.6208
((((((.(((((((((......))))))))).)).....	chr2:10588146-10588412(-)$1	1	66	105	12.1943
((((((((((.((((.(......).))))...))))...	chr19:49995025-49995236(+)$1	1	82	121	14.2868
..(((((.((((.(((......))).))))..)))))..	chr3:184020388-184020630(+)$1	1	151	190	13.9255
(((.(((.(.(((.........))).).))).)).))).	chr1:220219660-220219883(-)$1	1	18	57	11.8338
(((..(((((.((((((......))))))..)))))...	chr11:9406096-9406364(+)$1	1	38	77	12.5230
.((((((((.(..(.(((....))))).))).)))))))	chr6:31749603-31749829(-)$1	1	87	126	11.6222
(((....(((((...((((......))))...)))))))	chr17:74733226-74733508(-)$1	1	242	281	12.6626
..(.((..(((..((((......)))).))).)).)...	chr19:41782038-41782287(+)$1	1	178	217	17.8702
.((.((.....(.((((......)))).))).)).))))	chr17:1587973-1588194(-)$1	1	85	124	15.1077
(((.((((....(((((......)))))....))))...	chrX:153582445-153582687(-)$1	1	41	80	12.8936
(((((((.((((..(((......))).)))).)))))))	chr3:138553443-138553727(-)$1	1	135	174	15.7487
..(((((..(((.((((......))))..)))..)))))	chr10:105727047-105727361(+)$1	1	129	168	13.2864
...(((.((...(((......))).)).)))...)))))	chr11:57585812-57586070(+)$1	1	116	155	12.8813
((((((.((((((.(((......)))))))))....)))	chr3:184046355-184046571(+)$1	1	123	162	14.3237
...((((..((((.(......).))))...)))).))))	chrX:153586536-153586747(-)$1	1	63	102	14.2719
..((((((((.((.(.(......)).))))).)))))))	chrX:153581427-153581662(-)$1	1	98	137	13.8924
(.(((...(((((((.(......).)))))))...))).	chr8:124408487-124408774(-)$1	1	57	96	15.7492
(.(.((((((...(((......)))...)))))).))).	chr1:894494-894737(-)$1	1	120	159	12.9343
(((((((((....((((......))))..))))))))).	chr5:126112899-126113122(+)$1	1	149	188	15.7948
(((((((((((.(.(((......))).)))).)).))))	chr22:19711730-19712033(+)$1	1	8	47	15.6650

#PSSM
[ : 0.12	! : 0.10	d : 0.10	f : 0.10	" : 0.10	g : 0.08	e : 0.07	i : 0.07	c : 0.05	# : 0.03	: : 0.03	b : 0.03	$ : 0.03	F : 0.01	
e : 0.10	d : 0.10	" : 0.10	b : 0.08	f : 0.08	g : 0.08	! : 0.07	i : 0.07	# : 0.05	a : 0.05	c : 0.05	: : 0.03	$ : 0.03	[ : 0.03	
e : 0.16	d : 0.12	b : 0.08	" : 0.08	a : 0.07	f : 0.07	g : 0.07	i : 0.07	c : 0.07	# : 0.05	[ : 0.05	: : 0.01	! : 0.01	= : 0.01	$ : 0.01	
[ : 0.19	e : 0.14	d : 0.12	c : 0.12	# : 0.07	g : 0.07	i : 0.07	! : 0.05	f : 0.05	" : 0.03	: : 0.01	= : 0.01	$ : 0.01	
c : 0.21	d : 0.12	b : 0.12	e : 0.12	g : 0.08	f : 0.08	i : 0.07	! : 0.03	# : 0.03	: : 0.01	= : 0.01	$ : 0.01	[ : 0.01	" : 0.01	
c : 0.19	b : 0.16	e : 0.14	d : 0.08	g : 0.08	i : 0.08	f : 0.08	[ : 0.03	" : 0.03	: : 0.01	= : 0.01	$ : 0.01	# : 0.01	
[ : 0.12	c : 0.12	e : 0.10	g : 0.08	! : 0.08	d : 0.08	" : 0.07	i : 0.07	f : 0.07	b : 0.05	# : 0.03	: : 0.01	a : 0.01	= : 0.01	$ : 0.01	
[ : 0.24	! : 0.14	" : 0.07	d : 0.07	e : 0.07	f : 0.07	= : 0.05	g : 0.05	i : 0.05	b : 0.05	c : 0.05	# : 0.03	$ : 0.01	
c : 0.17	d : 0.14	e : 0.10	g : 0.08	b : 0.07	a : 0.07	f : 0.07	= : 0.05	# : 0.05	i : 0.05	! : 0.05	" : 0.03	$ : 0.01	
c : 0.17	d : 0.17	e : 0.12	[ : 0.10	g : 0.08	# : 0.08	f : 0.07	= : 0.05	b : 0.03	i : 0.03	$ : 0.01	" : 0.01	
d : 0.17	c : 0.16	[ : 0.12	g : 0.10	e : 0.08	# : 0.08	= : 0.05	" : 0.05	i : 0.03	a : 0.03	b : 0.01	! : 0.01	$ : 0.01	f : 0.01	
d : 0.21	" : 0.10	[ : 0.10	e : 0.08	g : 0.08	! : 0.07	# : 0.07	= : 0.05	f : 0.05	i : 0.03	b : 0.03	a : 0.03	c : 0.03	
d : 0.14	e : 0.12	[ : 0.12	" : 0.10	! : 0.10	g : 0.08	c : 0.08	# : 0.05	f : 0.05	= : 0.03	i : 0.03	b : 0.01	a : 0.01	
d : 0.33	c : 0.10	e : 0.08	[ : 0.08	" : 0.07	g : 0.07	! : 0.05	= : 0.03	a : 0.03	i : 0.03	f : 0.03	# : 0.01	r : 0.01	
d : 0.35	c : 0.24	a : 0.07	e : 0.07	g : 0.07	= : 0.03	[ : 0.03	f : 0.03	! : 0.01	i : 0.01	r : 0.01	" : 0.01	
d : 0.32	c : 0.24	[ : 0.08	o : 0.07	e : 0.07	= : 0.03	g : 0.03	r : 0.03	f : 0.03	! : 0.01	a : 0.01	i : 0.01	
d : 0.30	c : 0.23	o : 0.12	a : 0.08	e : 0.07	r : 0.05	= : 0.03	g : 0.03	f : 0.03	b : 0.01	
o : 0.58	c : 0.08	d : 0.07	n : 0.07	r : 0.05	= : 0.01	e : 0.01	g : 0.01	b : 0.01	[ : 0.01	l : 0.01	m : 0.01	
o : 0.64	n : 0.14	m : 0.05	r : 0.05	= : 0.01	c : 0.01	e : 0.01	b : 0.01	l : 0.01	d : 0.01	
o : 0.69	n : 0.14	m : 0.05	r : 0.05	l : 0.03	b : 0.01	
o : 0.71	n : 0.14	m : 0.05	r : 0.05	l : 0.01	c : 0.01	
o : 0.64	n : 0.14	r : 0.05	a : 0.03	m : 0.03	c : 0.03	l : 0.01	g : 0.01	d : 0.01	
o : 0.58	c : 0.12	n : 0.07	d : 0.05	] : 0.03	g : 0.03	r : 0.03	a : 0.01	e : 0.01	i : 0.01	
d : 0.30	c : 0.24	o : 0.12	e : 0.07	a : 0.07	g : 0.05	r : 0.03	f : 0.03	= : 0.01	2 : 0.01	i : 0.01	
d : 0.30	c : 0.28	e : 0.07	] : 0.07	o : 0.07	g : 0.05	f : 0.03	= : 0.01	2 : 0.01	b : 0.01	r : 0.01	i : 0.01	a : 0.01	
d : 0.35	c : 0.19	e : 0.08	] : 0.07	g : 0.07	= : 0.03	a : 0.03	b : 0.03	3 : 0.03	f : 0.03	o : 0.01	i : 0.01	
d : 0.33	e : 0.10	] : 0.10	g : 0.07	2 : 0.05	a : 0.05	b : 0.05	c : 0.05	f : 0.05	= : 0.03	3 : 0.03	6 : 0.01	i : 0.01	
] : 0.23	d : 0.14	2 : 0.12	e : 0.08	3 : 0.08	g : 0.07	f : 0.07	= : 0.03	a : 0.03	i : 0.03	b : 0.03	c : 0.01	6 : 0.01	
d : 0.19	c : 0.19	2 : 0.08	f : 0.08	g : 0.07	= : 0.05	4 : 0.05	e : 0.05	3 : 0.05	i : 0.03	] : 0.03	a : 0.03	b : 0.01	6 : 0.01	
c : 0.21	d : 0.14	3 : 0.10	e : 0.07	g : 0.07	i : 0.07	= : 0.05	4 : 0.05	] : 0.05	f : 0.05	2 : 0.03	b : 0.03	a : 0.01	6 : 0.01	
c : 0.24	d : 0.17	g : 0.07	i : 0.07	2 : 0.07	= : 0.05	4 : 0.05	e : 0.05	3 : 0.05	f : 0.05	] : 0.03	a : 0.01	6 : 0.01	b : 0.01	
] : 0.24	d : 0.14	c : 0.08	g : 0.07	3 : 0.07	2 : 0.07	e : 0.07	= : 0.05	4 : 0.05	i : 0.05	f : 0.05	6 : 0.01	
b : 0.21	e : 0.17	d : 0.14	g : 0.08	c : 0.07	i : 0.07	= : 0.05	3 : 0.05	a : 0.03	2 : 0.03	f : 0.03	4 : 0.01	
b : 0.23	e : 0.16	d : 0.12	g : 0.08	i : 0.07	= : 0.05	] : 0.05	2 : 0.05	3 : 0.05	c : 0.03	4 : 0.03	> : 0.01	f : 0.01	
] : 0.17	e : 0.16	d : 0.10	2 : 0.10	g : 0.08	3 : 0.08	i : 0.07	= : 0.05	c : 0.03	4 : 0.03	b : 0.01	> : 0.01	0 : 0.01	h : 0.01	
e : 0.19	d : 0.10	g : 0.10	c : 0.10	2 : 0.08	i : 0.07	= : 0.05	3 : 0.05	f : 0.05	4 : 0.03	a : 0.03	b : 0.01	] : 0.01	> : 0.01	0 : 0.01	h : 0.01	
e : 0.16	c : 0.12	g : 0.10	3 : 0.08	d : 0.08	4 : 0.07	i : 0.07	= : 0.05	f : 0.05	b : 0.05	2 : 0.03	0 : 0.03	] : 0.01	> : 0.01	h : 0.01	
c : 0.16	d : 0.14	g : 0.10	b : 0.07	e : 0.07	i : 0.07	a : 0.05	f : 0.05	4 : 0.05	= : 0.03	3 : 0.03	2 : 0.03	] : 0.03	0 : 0.03	> : 0.01	h : 0.01	
d : 0.12	c : 0.10	] : 0.10	g : 0.10	e : 0.08	2 : 0.07	b : 0.07	3 : 0.05	f : 0.05	4 : 0.05	i : 0.03	0 : 0.03	: : 0.03	= : 0.01	> : 0.01	h : 0.01	

#score	755.2209687767212
#seq	56
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_transcript_m2_run1.txt

#BEAR
:ffffff[aa[cccmmmmccc]a]a]ffffffC	chr6:15248578-15248839(+)$1	261	21	54	12.0029
iiiii####eeeeemmmmeeeeeiiiiiiiiif	chr12:123873662-123873943(+)$1	281	136	169	10.9649
ggggggg[ffffffmmmmffffff22ggggggg	chr2:122288470-122288696(+)$1	226	67	100	11.1253
eeccc[bb!!ddddmmmmdddd22bb]ccc]ee	chr16:24551249-24551546(+)$1	297	237	270	11.3937
$$$$$dddd!!cccmmmmcccddddddddccc:	chr3:5163970-5164235(+)$1	265	22	55	10.9711
gggggga"""ddddmmmmdddd333a]gggggg	chr2:196522615-196522873(+)$1	258	29	62	13.7197
ffffff!!bb[cccmmmmccc]bb22ffffff2	chr7:101459404-101459642(+)$1	238	103	136	12.5561
[eeeee[a"""cccmmmmccc333a]eeeeeee	chr10:105726970-105727225(+)$1	255	166	199	15.3446
!ggggggg"""cccmmmmccc22ggggggg333	chr17:74733219-74733474(-)$1	255	116	149	16.1622
dddd[dddd[ddddmmmmdddd]dddd]dddd]	chr19:8386448-8386673(+)$1	225	138	171	10.7574
$$$ccceeeeecccmmmmccc]eeeee]ccc44	chr7:5462991-5463271(-)$1	280	104	137	12.8997
cc!!eeeee!!cccmmmmccc4444eeeeeccc	chr12:123868691-123869018(+)$1	327	52	85	14.4636
$$$$ccc[ccccccmmmmccc]ccc]cccbbee	chr1:31375571-31375866(-)$1	295	204	237	12.5326
===========[bblllbb]=============	chr3:184032280-184032555(+)$1	275	134	167	10.5871
fffeeeee[a[cccmmmmccc]a]eeeee4444	chr3:25705697-25705984(-)$1	287	140	173	14.4409
ffff[a[gggggggmmmmggggggg]affffff	chr8:54794358-54794764(+)$1	406	237	270	11.3115
eeeee[dddd[cccmmmmccc]dddd]eeeee3	chr8:131028242-131028546(-)$1	304	119	152	12.9999
ccc[ffffff[cccmmmmcccffffffccc22g	chr17:41150664-41150944(+)$1	280	172	205	12.2991
:ffffff[ccccccmmmmccc]ccc]ffffff:	chr19:344279-344587(-)$1	308	232	265	11.5069
ddggggggg"""bbmmmmbb4444ggggggg]d	chr1:68150872-68151130(+)$1	258	203	236	12.9013
=========!!cccnnnnnccc===========	chr22:50037581-50037811(-)$1	230	50	83	11.5167
"bb[dddd!!ddddmmmmdddd22ddddbb333	chr14:103059073-103059317(+)$1	244	128	161	12.0851
dddddddd!!ddddmmmmdddd]dddd22dddd	chr11:65343585-65343851(+)$1	266	114	147	10.4802
eeeeee[bb[ddddmmmmddddbbeeeee333e	chr1:185125782-185126116(-)$1	334	224	257	11.6821
eeeee[ccc"""ccclllccc]ccc]eeeeedd	chr11:64089107-64089331(+)$1	224	189	222	11.7950
eee[ccc[ccc[ccclllccc]ccc]ccc333e	chr11:118272274-118272535(+)$1	261	46	79	11.9420
ffffeeeee!!cccmmmmccc333eeeeecccn	chr19:5719750-5720047(-)$1	297	21	54	13.8727
##dddd[a[bb[ccclllccc]bba]dddd333	chr17:38573918-38574210(-)$1	292	93	126	11.2272
gggggg"""bbcccmmmmccc]bb333gggggg	chr1:155224812-155225159(-)$1	347	212	245	13.7869
[bb[bb[ccc[cccmmmmcccccc22bb]bb]b	chr16:70472765-70473032(-)$1	267	97	130	11.4335
c[a[dddd[a[ccclllccc]a]dddd]a]ccc	chr19:4400376-4400616(-)$1	240	12	45	11.0150
#ggggggg!!ddddllldddd22gggggggbbc	chr9:140135670-140135923(+)$1	253	188	221	11.1895
""ggggggg!!cccmmmmccc22ggggggg666	chr1:149194006-149194241(-)$1	235	106	139	14.4404
""eeeee!!eeeeemmmmeeeee4444eeeee]	chr9:74979927-74980173(-)$1	246	79	112	11.3838
[a[ccc[ccc[cccmmmmccc333cccccca]b	chr16:28875061-28875358(+)$1	297	200	233	14.5538
::ggggggg!!cccmmmmccc22gggggggddd	chr3:122785828-122786147(+)$1	319	23	56	12.8968
bb[ccc[gggggggmmmmgggggggcccbb]ii	chr22:50021640-50021910(-)$1	270	224	257	10.9754
dddffffffbbcccmmmmccc]bb]ffffff22	chr5:159848894-159849142(+)$1	248	127	160	11.5591
f"""bbccc[ddddmmmmddddccc]bb333ff	chr19:10406933-10407183(+)$1	250	54	87	11.1330
!!ccc!!a[bb[bbmmmmbb]bb]a22ccc333	chr12:125478278-125478560(+)$1	282	96	129	11.5361
!!ccc[dddd[cccmmmmccc22dddd22ccc2	chr1:21503000-21503258(-)$1	258	87	120	13.0528
'ggggggg!!ddddmmmmdddd]ggggggg]ff	chr1:228331696-228331989(+)$1	293	243	276	12.8306
dd[ggggggg[ccclllcccggggggg]dddd2	chr22:38902049-38902321(-)$1	272	39	72	11.1266
[eeeeebb!!a[bbmmmmbb]a22bb]eeeee]	chr4:56502148-56502368(-)$1	220	59	92	11.2482
ggggggg$$$$$bbmmmmbb4444ggggggg]c	chr21:45285297-45285551(+)$1	254	16	49	12.4007
ggggeeeee[acccmmmmccc]a]eeeee4444	chr7:101460068-101460284(+)$1	216	91	124	14.5522
c[dddd!!bb!!ccclllccc22bb22dddd]c	chr6:35436087-35436317(+)$1	230	170	203	10.4921
[bb[eeeee!!cccmmmmccc22eeeee]bbcc	chr20:35234218-35234510(+)$1	292	14	47	13.5019
gggeeeee!!ddddmmmmdddd22eeeeeFFFF	chr12:131358990-131359220(+)$1	230	134	167	11.1853
c[ggggggg[ddddmmmmddddggggggg]ccc	chr21:9826119-9826351(+)$1	232	72	105	12.8803
=a[ffffff"""bbmmmmbb]ffffff]a333=	chr20:62331527-62331806(-)$1	279	162	195	11.6280
!eeeee####ddddmmmmdddd4444eeeee22	chr19:36631903-36632180(+)$1	277	238	271	13.0030
eeeeeedddd[cccmmmmccc]dddd]eeeee>	chr9:139564437-139564705(+)$1	268	42	75	12.6603
###ddddeeeeeccclllccc]eeeee]dddde	chr13:92001167-92001437(+)$1	270	68	101	9.9765
ggggggg[ffffffmmmmffffff22ggggggg	chr2:122288392-122288597(+)$1	205	145	178	11.1253
ddddbbccc!!cccmmmmccc22ccc]bb]ddd	chr19:2270531-2270776(+)$1	245	156	189	12.3609

#otherMatches

#Seq PSSM
ggcggguggggcgcgggGGUGGCGCGGCCUGCg	chr6:15248578-15248839(+)$1	261	21	54	12.0029
AGGGCGACGCGGGCUCCGGCCCGGCCCUCCCGG	chr12:123873662-123873943(+)$1	281	136	169	10.9649
GCAUCAACUAGAGCUUUUGCUUUAUUUUGGUGC	chr2:122288470-122288696(+)$1	226	67	100	11.1253
UCCCGGGGCCUGGGUCACCCCAAUCCACGGAGA	chr16:24551249-24551546(+)$1	297	237	270	11.3937
UUCCUGGGUCUGGCUGCUGCCGCCCGCCGGUGU	chr3:5163970-5164235(+)$1	265	22	55	10.9711
CCGAGGCGGAGCGCGGGGGUGUGAAGAUCUCGG	chr2:196522615-196522873(+)$1	258	29	62	13.7197
gcggggccgAGUCGGGGCCGAGUCCCUCCCGCU	chr7:101459404-101459642(+)$1	238	103	136	12.5561
GCCGUGACACGGGCCUAAGCCGCCGCCGCGGGA	chr10:105726970-105727225(+)$1	255	166	199	15.3446
GGCCUUUCCCAGUGUCCCCACGCGGAAGGCAAC	chr17:74733219-74733474(-)$1	255	116	149	16.1622
GGUAAUCGGGUGGGGGCAUUUGGCCGACUGCCG	chr19:8386448-8386673(+)$1	225	138	171	10.7574
UGGCGGGCAGCAGGGGCGCCUAGCUGCGCCGGG	chr7:5462991-5463271(-)$1	280	104	137	12.8997
CCAUGGCUAGAGGUAUUUGCCCAAGUGGCCGGC	chr12:123868691-123869018(+)$1	327	52	85	14.4636
UGUGCCCGUGGGCUGGGAGGCGCCAGGGGGCUG	chr1:31375571-31375866(-)$1	295	204	237	12.5326
CUGUGCGGCUGCGUGGGGCUCGGCCGCGCGGAC	chr3:184032280-184032555(+)$1	275	134	167	10.5871
AGGGAGGCGGGAGCGGCGGCUGCGGCCUCAGGG	chr3:25705697-25705984(-)$1	287	140	173	14.4409
GAAGCGGCGCUCCGGGACCGGGGUGGCUUUCCC	chr8:54794358-54794764(+)$1	406	237	270	11.3115
ggggcguccgggccggcgggcgcgggggucccg	chr8:131028242-131028546(-)$1	304	119	152	12.9999
GUCAUCGUGAAGGUAUCAGCCUCGCGGGACUCU	chr17:41150664-41150944(+)$1	280	172	205	12.2991
CGAGUGCUGGGGCCGCCAGGCGCCCCGCGCUCC	chr19:344279-344587(-)$1	308	232	265	11.5069
GGCGCCUGUGAGUGAGUGCAGAAAGCAGGCGCC	chr1:68150872-68151130(+)$1	258	203	236	12.9013
GGUCAGGGUGAGCAGGGGAUGCACUUUGGCCCU	chr22:50037581-50037811(-)$1	230	50	83	11.5167
CGCACGGCCCCGGCCCCCGCCGAUGCCGGCCAU	chr14:103059073-103059317(+)$1	244	128	161	12.0851
CCCGGGCCGGGCCAGCGGUGGCGGGCCAGCGGG	chr11:65343585-65343851(+)$1	266	114	147	10.4802
GAGCCCCGCUCCGGGUCCCCGGGCGGGCUUGGC	chr1:185125782-185126116(-)$1	334	224	257	11.6821
GAAUGGCUGUUUCGCUGAGCGCCAGGCAUUCUG	chr11:64089107-64089331(+)$1	224	189	222	11.7950
CCUUCCGGCGGGUGACAUUCAGCCGGCGGUUCG	chr11:118272274-118272535(+)$1	261	46	79	11.9420
CUCCGAGGCCAGCGGACCUGCGACGCCUCUCCU	chr19:5719750-5720047(-)$1	297	21	54	13.8727
GUCGGGGGUGGUCUCGUGGGGUCCUGCCUGUUU	chr17:38573918-38574210(-)$1	292	93	126	11.2272
CGAUGAGCCGGUGCCCCCGCGUCCUCAUCGUCG	chr1:155224812-155225159(-)$1	347	212	245	13.7869
ggcggcggcgacggcuuucugcgcgggcggcgg	chr16:70472765-70473032(-)$1	267	97	130	11.4335
cgcgcgcgggggccgggggcgcgcgcgggggcC	chr19:4400376-4400616(-)$1	240	12	45	11.0150
UCGGCGCCAAGGUAAGUUGCCGGGGCGCUGGGG	chr9:140135670-140135923(+)$1	253	188	221	11.1895
agugggggacugcguucgcgcuuuccccugAAU	chr1:149194006-149194241(-)$1	235	106	139	14.4404
AUCUCCUACGCGGGCUCGCUCGCUCCCGGGAGC	chr9:74979927-74980173(-)$1	246	79	112	11.3838
UGCAGGUGGGACCGGAACCGGAACCCCCCUCUU	chr16:28875061-28875358(+)$1	297	200	233	14.5538
GCUGCUGCGCAUGCUUUGGCAGACGUGGCACCG	chr3:122785828-122786147(+)$1	319	23	56	12.8968
GCAUCCUGGGCCCUGCCUGGGGCCUGGAGUCAU	chr22:50021640-50021910(-)$1	270	224	257	10.9754
GGCUCCGAGCCCGUUUGAGCGUGGUCUCGGACU	chr5:159848894-159849142(+)$1	248	127	160	11.5591
CCCUCCGCGAGGGUCUCCACCCCGCAGGUCCGU	chr19:10406933-10407183(+)$1	250	54	87	11.1330
cgggcuccugcugcugcugcugcugcugcugcu	chr12:125478278-125478560(+)$1	282	96	129	11.5361
CCCUGGGGUCGCGUUGUCACGGAGACCGGCAGC	chr1:21503000-21503258(-)$1	258	87	120	13.0528
UGGGGAUUAGGAGGGCAUCCUCAGGUCCUUCCC	chr1:228331696-228331989(+)$1	293	243	276	12.8306
GCCUAAACCGCGGCACUGCCCGGUUUGAGCGUA	chr22:38902049-38902321(-)$1	272	39	72	11.1266
CGCGGCGUCCCCgcuccugcugcugcugcugcu	chr4:56502148-56502368(-)$1	220	59	92	11.2482
GAGGUCGCCCCUGCCCCAGCCGUCCGACCUcgg	chr21:45285297-45285551(+)$1	254	16	49	12.4007
cgccgccgcUCCGGCACCCCGCGUGUGGCUCCC	chr7:101460068-101460284(+)$1	216	91	124	14.5522
UUCAGGUGCCCCGCCGAGGGUUCGGAUCCUGUA	chr6:35436087-35436317(+)$1	230	170	203	10.4921
CGCCGCAGGACCGGGCCGCUGAGCCUGCAGCCG	chr20:35234218-35234510(+)$1	292	14	47	13.5019
GAGAGUUACUUACAAGAAUGUGCCUAACUGGCA	chr12:131358990-131359220(+)$1	230	134	167	11.1853
CCCGUUCGGCGCGCGCGUGCGCCCGAGCGCGGC	chr21:9826119-9826351(+)$1	232	72	105	12.8803
AUGUCUGGAAAAGCGUAGGCAUCCGGAGGCUUU	chr20:62331527-62331806(-)$1	279	162	195	11.6280
AGGGGCGGGGCCUGGGAAUGGGAGGAGCCUCAG	chr19:36631903-36632180(+)$1	277	238	271	13.0030
UGGGGGGCCCUGGAAGGGUCCUGGGCACCUCCU	chr9:139564437-139564705(+)$1	268	42	75	12.6603
ccucggcgccgccggucgccgcgcggcugccgc	chr13:92001167-92001437(+)$1	270	68	101	9.9765
GCAUCAACUAGAGCUUUUGCUUUAUUUUGGUGC	chr2:122288392-122288597(+)$1	205	145	178	11.1253
CAGCCCCGGAUCGGGAGGUUGGGCCGCGGUGCU	chr19:2270531-2270776(+)$1	245	156	189	12.3609

#DB
.((((((.((.(((....))).).).))))))(	chr6:15248578-15248839(+)$1	1	21	54	12.0029
(((((....(((((....))))))))))))))(	chr12:123873662-123873943(+)$1	1	136	169	10.9649
(((((((.((((((....))))))..)))))))	chr2:122288470-122288696(+)$1	1	67	100	11.1253
(((((.((..((((....))))..)).))).))	chr16:24551249-24551546(+)$1	1	237	270	11.3937
.....((((..(((....)))))))))))))).	chr3:5163970-5164235(+)$1	1	22	55	10.9711
(((((((...((((....))))...).))))))	chr2:196522615-196522873(+)$1	1	29	62	13.7197
((((((..((.(((....))).))..)))))).	chr7:101459404-101459642(+)$1	1	103	136	12.5561
.(((((.(...(((....)))...).)))))))	chr10:105726970-105727225(+)$1	1	166	199	15.3446
.(((((((...(((....)))..)))))))...	chr17:74733219-74733474(-)$1	1	116	149	16.1622
((((.((((.((((....)))).)))).)))).	chr19:8386448-8386673(+)$1	1	138	171	10.7574
...(((((((((((....))).))))).)))..	chr7:5462991-5463271(-)$1	1	104	137	12.8997
((..(((((..(((....)))....))))))))	chr12:123868691-123869018(+)$1	1	52	85	14.4636
....(((.((((((....))).))).)))))))	chr1:31375571-31375866(-)$1	1	204	237	12.5326
(((((((((((.((...)).)))))))))))))	chr3:184032280-184032555(+)$1	1	134	167	10.5871
((((((((.(.(((....))).).)))))....	chr3:25705697-25705984(-)$1	1	140	173	14.4409
((((.(.(((((((....))))))).)))))))	chr8:54794358-54794764(+)$1	1	237	270	11.3115
(((((.((((.(((....))).)))).))))).	chr8:131028242-131028546(-)$1	1	119	152	12.9999
(((.((((((.(((....))))))))))))..)	chr17:41150664-41150944(+)$1	1	172	205	12.2991
.((((((.((((((....))).))).)))))).	chr19:344279-344587(-)$1	1	232	265	11.5069
(((((((((...((....))....))))))).)	chr1:68150872-68151130(+)$1	1	203	236	12.9013
(((((((((..(((.....))))))))))))))	chr22:50037581-50037811(-)$1	1	50	83	11.5167
.((.((((..((((....))))..))))))...	chr14:103059073-103059317(+)$1	1	128	161	12.0851
((((((((..((((....)))).))))..))))	chr11:65343585-65343851(+)$1	1	114	147	10.4802
((((((.((.((((....)))))))))))...)	chr1:185125782-185126116(-)$1	1	224	257	11.6821
(((((.(((...(((...))).))).)))))))	chr11:64089107-64089331(+)$1	1	189	222	11.7950
(((.(((.(((.(((...))).))).)))...)	chr11:118272274-118272535(+)$1	1	46	79	11.9420
))))(((((..(((....)))...)))))(((.	chr19:5719750-5720047(-)$1	1	21	54	13.8727
..((((.(.((.(((...))).))).))))...	chr17:38573918-38574210(-)$1	1	93	126	11.2272
((((((...(((((....))).))...))))))	chr1:155224812-155225159(-)$1	1	212	245	13.7869
.((.((.(((.(((....))))))..)).)).)	chr16:70472765-70473032(-)$1	1	97	130	11.4335
(.(.((((.(.(((...))).).)))).).)))	chr19:4400376-4400616(-)$1	1	12	45	11.0150
.(((((((..((((...))))..))))))))))	chr9:140135670-140135923(+)$1	1	188	221	11.1895
..(((((((..(((....)))..)))))))...	chr1:149194006-149194241(-)$1	1	106	139	14.4404
..(((((..(((((....)))))....))))).	chr9:74979927-74980173(-)$1	1	79	112	11.3838
.(.(((.(((.(((....)))...))))))).)	chr16:28875061-28875358(+)$1	1	200	233	14.5538
..(((((((..(((....)))..)))))))(((	chr3:122785828-122786147(+)$1	1	23	56	12.8968
((.(((.(((((((....)))))))))))).))	chr22:50021640-50021910(-)$1	1	224	257	10.9754
((((((((((((((....))).)).))))))..	chr5:159848894-159849142(+)$1	1	127	160	11.5591
(...(((((.((((....))))))).))...))	chr19:10406933-10407183(+)$1	1	54	87	11.1330
..(((..(.((.((....)).)).)..)))...	chr12:125478278-125478560(+)$1	1	96	129	11.5361
..(((.((((.(((....)))..))))..))).	chr1:21503000-21503258(-)$1	1	87	120	13.0528
.(((((((..((((....)))).))))))).))	chr1:228331696-228331989(+)$1	1	243	276	12.8306
((.(((((((.(((...)))))))))).)))).	chr22:38902049-38902321(-)$1	1	39	72	11.1266
.(((((((..(.((....)).)..)).))))).	chr4:56502148-56502368(-)$1	1	59	92	11.2482
(((((((.....((....))....))))))).)	chr21:45285297-45285551(+)$1	1	16	49	12.4007
(((((((((.((((....))).).)))))....	chr7:101460068-101460284(+)$1	1	91	124	14.5522
(.((((..((..(((...)))..))..)))).)	chr6:35436087-35436317(+)$1	1	170	203	10.4921
.((.(((((..(((....)))..))))).))))	chr20:35234218-35234510(+)$1	1	14	47	13.5019
)))(((((..((((....))))..)))))))))	chr12:131358990-131359220(+)$1	1	134	167	11.1853
(.(((((((.((((....))))))))))).)))	chr21:9826119-9826351(+)$1	1	72	105	12.8803
((.((((((...((....)).)))))).)...)	chr20:62331527-62331806(-)$1	1	162	195	11.6280
.(((((....((((....))))....)))))..	chr19:36631903-36632180(+)$1	1	238	271	13.0030
((((((((((.(((....))).)))).))))).	chr9:139564437-139564705(+)$1	1	42	75	12.6603
...((((((((((((...))).))))).)))))	chr13:92001167-92001437(+)$1	1	68	101	9.9765
(((((((.((((((....))))))..)))))))	chr2:122288392-122288597(+)$1	1	145	178	11.1253
(((((((((..(((....)))..))).)).)))	chr19:2270531-2270776(+)$1	1	156	189	12.3609

#PSSM
g : 0.12	e : 0.10	d : 0.10	f : 0.08	[ : 0.08	c : 0.08	! : 0.07	: : 0.05	$ : 0.05	= : 0.05	" : 0.05	# : 0.05	i : 0.01	b : 0.01	' : 0.01	
g : 0.17	e : 0.16	f : 0.10	d : 0.10	b : 0.07	$ : 0.05	[ : 0.05	" : 0.05	c : 0.03	= : 0.03	# : 0.03	a : 0.03	! : 0.03	i : 0.01	: : 0.01	
g : 0.24	e : 0.16	f : 0.10	d : 0.10	c : 0.07	[ : 0.07	$ : 0.05	b : 0.05	= : 0.03	i : 0.01	! : 0.01	a : 0.01	" : 0.01	# : 0.01	
g : 0.24	e : 0.17	f : 0.12	c : 0.10	d : 0.10	[ : 0.10	$ : 0.03	= : 0.03	i : 0.01	! : 0.01	" : 0.01	
e : 0.24	g : 0.23	c : 0.14	f : 0.10	d : 0.10	b : 0.05	[ : 0.03	= : 0.03	i : 0.01	$ : 0.01	
g : 0.23	e : 0.21	d : 0.14	f : 0.10	c : 0.08	[ : 0.07	b : 0.05	= : 0.03	# : 0.01	a : 0.01	! : 0.01	
g : 0.19	d : 0.16	e : 0.14	[ : 0.12	f : 0.08	c : 0.08	! : 0.05	# : 0.03	b : 0.03	= : 0.03	a : 0.01	" : 0.01	
g : 0.17	d : 0.14	e : 0.14	[ : 0.10	c : 0.08	b : 0.05	! : 0.05	a : 0.05	f : 0.05	# : 0.03	" : 0.03	= : 0.03	$ : 0.01	
! : 0.14	c : 0.14	g : 0.12	e : 0.10	f : 0.08	d : 0.08	" : 0.07	[ : 0.07	b : 0.05	# : 0.03	= : 0.03	a : 0.01	$ : 0.01	
! : 0.26	" : 0.10	b : 0.10	[ : 0.08	c : 0.08	e : 0.07	a : 0.05	f : 0.05	g : 0.05	d : 0.05	= : 0.01	$ : 0.01	# : 0.01	
d : 0.21	[ : 0.19	! : 0.16	" : 0.08	e : 0.07	b : 0.07	c : 0.05	f : 0.03	g : 0.03	a : 0.03	= : 0.01	$ : 0.01	
c : 0.48	d : 0.21	[ : 0.08	e : 0.05	" : 0.05	f : 0.03	g : 0.03	$ : 0.01	! : 0.01	
c : 0.57	d : 0.21	b : 0.10	e : 0.03	f : 0.03	g : 0.03	
c : 0.57	d : 0.21	b : 0.10	e : 0.03	f : 0.03	g : 0.03	
m : 0.82	c : 0.08	l : 0.07	n : 0.01	
m : 0.82	l : 0.16	n : 0.01	
m : 0.82	l : 0.16	n : 0.01	
m : 0.82	l : 0.08	c : 0.03	b : 0.01	n : 0.01	d : 0.01	
c : 0.55	d : 0.21	b : 0.10	e : 0.03	f : 0.03	g : 0.03	n : 0.01	
c : 0.57	d : 0.21	b : 0.08	e : 0.03	f : 0.03	g : 0.03	] : 0.01	
c : 0.53	d : 0.21	] : 0.07	g : 0.05	e : 0.03	f : 0.03	4 : 0.03	= : 0.01	
] : 0.26	d : 0.21	2 : 0.14	f : 0.07	3 : 0.05	4 : 0.05	g : 0.05	e : 0.03	c : 0.03	a : 0.03	= : 0.01	b : 0.01	
2 : 0.21	b : 0.10	c : 0.10	e : 0.07	f : 0.07	3 : 0.07	] : 0.07	4 : 0.07	g : 0.07	a : 0.05	d : 0.05	= : 0.03	
g : 0.16	d : 0.12	c : 0.12	b : 0.10	4 : 0.08	] : 0.07	f : 0.07	2 : 0.07	3 : 0.07	e : 0.05	= : 0.03	i : 0.01	
g : 0.19	d : 0.14	e : 0.14	c : 0.12	a : 0.07	2 : 0.07	b : 0.05	4 : 0.05	3 : 0.03	= : 0.03	f : 0.03	i : 0.01	] : 0.01	
] : 0.16	g : 0.16	e : 0.16	d : 0.14	2 : 0.10	f : 0.05	c : 0.05	b : 0.03	= : 0.03	4 : 0.03	i : 0.01	a : 0.01	3 : 0.01	
e : 0.21	g : 0.19	d : 0.12	f : 0.10	] : 0.10	c : 0.07	= : 0.03	b : 0.03	2 : 0.03	i : 0.01	a : 0.01	3 : 0.01	4 : 0.01	
e : 0.24	g : 0.21	c : 0.12	] : 0.10	f : 0.08	d : 0.07	b : 0.05	= : 0.03	2 : 0.03	i : 0.01	
e : 0.23	g : 0.21	c : 0.12	d : 0.10	f : 0.08	b : 0.05	= : 0.03	2 : 0.03	] : 0.03	a : 0.03	i : 0.01	3 : 0.01	
g : 0.19	c : 0.14	e : 0.14	d : 0.10	f : 0.08	b : 0.08	3 : 0.07	] : 0.05	= : 0.03	4 : 0.03	i : 0.01	F : 0.01	
3 : 0.14	c : 0.12	e : 0.12	d : 0.12	g : 0.10	f : 0.08	b : 0.07	] : 0.05	= : 0.03	4 : 0.03	i : 0.01	2 : 0.01	6 : 0.01	a : 0.01	F : 0.01	
e : 0.12	c : 0.12	3 : 0.12	d : 0.12	f : 0.10	] : 0.08	g : 0.07	4 : 0.05	2 : 0.05	i : 0.03	= : 0.03	b : 0.01	6 : 0.01	F : 0.01	
c : 0.12	e : 0.10	g : 0.08	2 : 0.08	3 : 0.08	d : 0.08	f : 0.07	] : 0.05	4 : 0.05	= : 0.05	: : 0.03	b : 0.03	C : 0.01	n : 0.01	6 : 0.01	i : 0.01	F : 0.01	> : 0.01	

#score	685.472469106307
#seq	56
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_CDS_m3_run1.txt

#BEAR
ddabboooooobb]a]	chr7:151845069-151845315(-)$1	246	207	223	11.7511
fffbboooooobb]ff	chr8:48650435-48650652(-)$1	217	194	210	11.9491
eeeeeooooooeeeee	chr19:8550671-8550944(+)$1	273	53	69	11.1301
eeeeeooooooeeeee	chrM:14361-14591(-)$1	230	31	47	11.1301
eeebboooooobb]ee	chr8:48650427-48650635(-)$1	208	177	193	12.3259
""cccooooooccc33	chr22:38882100-38882389(-)$1	289	163	179	10.7421
fffffoooooofffff	chr1:109289280-109289510(+)$1	230	69	85	10.8059
ccc[aooooooa]ccc	chr15:38776593-38776846(+)$1	253	24	40	10.7402

#otherMatches

#Seq PSSM
GCCGUUCACAUGCUGU	chr7:151845069-151845315(-)$1	246	207	223	11.7511
GCUGUGCCACGACGAG	chr8:48650435-48650652(-)$1	217	194	210	11.9491
CAUGGGCCAGACCAUG	chr19:8550671-8550944(+)$1	273	53	69	11.1301
GGGUGUGUUAUUAUUC	chrM:14361-14591(-)$1	230	31	47	11.1301
GCUGUGCCACGACGAG	chr8:48650427-48650635(-)$1	208	177	193	12.3259
AUGGUCAAGGCACCUA	chr22:38882100-38882389(-)$1	289	163	179	10.7421
UGUCGGGAAGAUGGCG	chr1:109289280-109289510(+)$1	230	69	85	10.8059
ggugggagagguggcu	chr15:38776593-38776846(+)$1	253	24	40	10.7402

#DB
(((((......)).).	chr7:151845069-151845315(-)$1	1	207	223	11.7511
(((((......)).))	chr8:48650435-48650652(-)$1	1	194	210	11.9491
(((((......)))))	chr19:8550671-8550944(+)$1	1	53	69	11.1301
(((((......)))))	chrM:14361-14591(-)$1	1	31	47	11.1301
(((((......)).))	chr8:48650427-48650635(-)$1	1	177	193	12.3259
..(((......)))..	chr22:38882100-38882389(-)$1	1	163	179	10.7421
(((((......)))))	chr1:109289280-109289510(+)$1	1	69	85	10.8059
(((.(......).)))	chr15:38776593-38776846(+)$1	1	24	40	10.7402

#PSSM
e : 0.37	f : 0.25	d : 0.12	" : 0.12	c : 0.12	
e : 0.37	f : 0.25	d : 0.12	" : 0.12	c : 0.12	
e : 0.37	f : 0.25	c : 0.25	a : 0.12	
b : 0.37	e : 0.25	c : 0.12	f : 0.12	[ : 0.12	
b : 0.37	e : 0.25	c : 0.12	f : 0.12	a : 0.12	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
b : 0.37	e : 0.25	c : 0.12	f : 0.12	a : 0.12	
b : 0.37	e : 0.25	c : 0.12	f : 0.12	] : 0.12	
] : 0.37	e : 0.25	c : 0.25	f : 0.12	
e : 0.37	f : 0.25	a : 0.12	3 : 0.12	c : 0.12	
e : 0.37	f : 0.25	] : 0.12	3 : 0.12	c : 0.12	

#score	90.57485813796248
#seq	8
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF305BNZ_LARP7_transcript_m3_run1.txt

#BEAR
gggggg[a####bb!!a[==========[bb	chr1:31316625-31316877(+)$1	252	49	80	12.6962
fffffccc!!a[bboooooobb]a]ccc22f	chr5:109035407-109035635(-)$1	228	111	142	16.1118
iiiiiiii####bb!!a[=========="""	chr10:22222036-22222265(+)$1	229	40	71	12.7265
gggggccc!!a[bboooooobb]a]ccc22g	chr5:109035380-109035591(-)$1	211	67	98	17.2794
gggggg[a####bb!!a[=========="""	chr5:6848434-6848670(-)$1	236	100	131	12.9924
hhhhhh"""cccbboooooobb]ccc]hhhh	chr10:6191565-6191788(+)$1	223	166	197	14.9709
ggggggg[a####bb!!a[==========[b	chr14:90178812-90179014(+)$1	202	46	77	11.5422
d[ggggggg"""bbnnnnnbb]ggggggg]d	chr4:53578764-53579011(+)$1	247	7	38	11.2625
dd[ccc$$$$$cccooooooccc4444ccc]	chr19:2270090-2270359(+)$1	269	57	88	13.1981
ccccc"""ccc[bboooooobbccc333ccc	chr22:37451104-37451328(-)$1	224	134	165	16.0198
d$$$$$ffffffbboooooobb333ffffff	chr11:16863741-16863953(+)$1	212	161	192	12.8021
d"""eeeeebb[bboooooobb]bb]eeeee	chr1:181808579-181808828(-)$1	249	22	53	14.4924
ggggggg[a####bb!!a[==========[b	chr14:90178856-90179075(+)$1	219	2	33	11.5422
!!ccc$$$$$ddddoooooodddd]ccc444	chr19:33353685-33353952(-)$1	267	139	170	11.1049
eee:dddd[cccbboooooobb]ccc22ddd	chr3:139303000-139303268(-)$1	268	126	157	14.6123
iiiiiiii####bb!!a[=========="""	chr10:22222013-22222221(+)$1	208	63	94	12.7265
dd::dddd[cccbboooooobb]ccc22ddd	chr6:52860426-52860628(+)$1	202	137	168	13.9875
d"""eeeeebb[bboooooobb]bb]eeeee	chr13:99857999-99858207(+)$1	208	65	96	14.4924
dd::eeeeecccbboooooobb]ccc]eeee	chr15:77028928-77029193(+)$1	265	199	230	13.4001
ffffffff[cccbboooooobb]ccc22fff	chr18:1323886-1324123(-)$1	237	183	214	14.7596
[ggggggg[cccooooooccc]ggggggg]a	chr4:53578745-53578964(+)$1	219	1	32	10.7467
gggggccc!!a[cccmmmmccc]a]ccc22g	chr16:81995432-81995673(+)$1	241	109	140	11.0738
gggggg[a####bb!!a[=========="""	chr9:77414736-77414943(+)$1	207	79	110	12.9924
dd::ccc!!cccbboooooobb]ccc333cc	chr14:90178875-90179100(+)$1	225	125	156	15.2016
ggggggg[a####bb!!a[==========[b	chr14:90178792-90178996(+)$1	204	66	97	11.5422
hhhhhhhh"""cccooooooccc333hhhhh	chr15:47564691-47564906(+)$1	215	100	131	12.1633
gggggccc!!a[bboooooobb]a]ccc22g	chr5:109035391-109035607(-)$1	216	83	114	17.2794
dd::dddd[cccbboooooobb]ccc22ddd	chr12:112704857-112705108(+)$1	251	169	200	13.9875
dddd[ccc!!a[cccooooooccc]a22ccc	chr7:154973557-154973794(+)$1	237	165	196	12.9549
:bb[eeeeecccbboooooobb]ccc]eeee	chr6:151640730-151640952(+)$1	222	183	214	13.6304
c[cccccc!!a[cccmmmmccc]a]ccc22c	chr5:143915092-143915295(-)$1	203	73	104	10.8016
gggggccc!!a[cccmmmmccc]a]ccc22g	chr16:81995417-81995628(+)$1	211	124	155	11.0738
####eeeeebb[bboooooobbbb]eeeee5	chr20:33969453-33969711(-)$1	258	138	169	12.8888
eeccc[a!!bb[bboooooobb333bb22a]	chr4:6998909-6999151(+)$1	242	96	127	15.3721
fff"""dddd!!bboooooobbdddd4444f	chr17:33900633-33900874(+)$1	241	73	104	13.3494
ggggggg[a####bb!!a[==========[b	chr14:90178819-90179056(+)$1	237	39	70	11.5422
eee$$$$$ccc[cccooooooccc]ccc22e	chr2:97535519-97535828(-)$1	309	104	135	11.2811
d$$$$$ffffffbboooooobb333ffffff	chr11:16863753-16863987(+)$1	234	149	180	12.8021
%%%%dddd[cccbboooooobb]ccc22ddd	chr4:121982436-121982734(-)$1	298	247	278	13.6121
gggggg[a####bb!!a[==========!!d	chr4:7113986-7114204(-)$1	218	83	114	13.1069
gggggg$$$$$cccooooooccc22gggggg	chr9:103343524-103343762(-)$1	238	4	35	13.3785
gggggccc!!a[bboooooobb]a]ccc22g	chr5:109035336-109035580(-)$1	244	56	87	17.2794
d"""eeeeebb[bboooooobb]bb]eeeee	chr13:99858007-99858218(+)$1	211	57	88	14.4924
dd::dddd[cccbboooooobb]ccc22ddd	chr6:52860423-52860626(+)$1	203	140	171	13.9875
iiiiiiii[bbrrrrrrrrrbb]iiiiiiii	chr6:151640723-151640930(+)$1	207	6	37	10.4678
dd::dddd[cccbboooooobb]ccc22ddd	chr17:70660034-70660285(-)$1	251	140	171	13.9875
gggggg$$$$$cccoooooocccgggggggc	chr1:173760923-173761127(+)$1	204	150	181	13.6930
e]adddd[ccc[cccooooooccc]ccc]dd	chr4:53578729-53578945(+)$1	216	163	194	11.6642
eeeebb"""cccbboooooobb]ccc]bb]e	chr3:56106080-56106332(+)$1	252	195	226	14.5971
iiiiiiii####bb!!a[=========="""	chr10:22221971-22222213(+)$1	242	105	136	12.7265
gggggg[a####bb!!a[=========="""	chr5:6848470-6848676(-)$1	206	106	137	12.9924
$$$$eeeeebb[bboooooobbbb]eeeee5	chr20:11799598-11799841(-)$1	243	139	170	12.3243
%%%%dddd[cccbboooooobb]ccc22ddd	chr3:139303078-139303332(-)$1	254	190	221	13.6121
ccccc"""ccc[bboooooobbccc333ccc	chr22:37451049-37451293(-)$1	244	99	130	16.0198

#otherMatches

#Seq PSSM
ugagggugaucuggcugugacaucugucacc	chr1:31316625-31316877(+)$1	252	49	80	12.6962
cgaucuggcugcgaaaucugucaccccauug	chr5:109035407-109035635(-)$1	228	111	142	16.1118
ugagggggaucuggcugcgacaucugucacc	chr10:22222036-22222265(+)$1	229	40	71	12.7265
cgaucuggcugcgaaaucugucaccccauug	chr5:109035380-109035591(-)$1	211	67	98	17.2794
ugagggcgaucuggcugcgacaucugucacc	chr5:6848434-6848670(-)$1	236	100	131	12.9924
ggaugaccauccccaauagaggaggacucau	chr10:6191565-6191788(+)$1	223	166	197	14.9709
gugagggcgaucuggcugcgacaucugucac	chr14:90178812-90179014(+)$1	202	46	77	11.5422
CUGGGCUCGCCCGGUGUCCCCACGAGCUUUG	chr4:53578764-53579011(+)$1	247	7	38	11.2625
CAGACUGGGAAUUCGGUUUGGAGGAAGGGUG	chr19:2270090-2270359(+)$1	269	57	88	13.1981
gugaguagcugcgcuccccugcuagaaccuc	chr22:37451104-37451328(-)$1	224	134	165	16.0198
gcuccaugugcaucccuccugaagcugcaca	chr11:16863741-16863953(+)$1	212	161	192	12.8021
gcuccaugugcgucccucucgaagcugcaug	chr1:181808579-181808828(-)$1	249	22	53	14.4924
gugagggcgaucuggcugcgacaucugucac	chr14:90178856-90179075(+)$1	219	2	33	11.5422
aaggguauaugaguagcugcgcucccccgcu	chr19:33353685-33353952(-)$1	267	139	170	11.1049
ggaugaccauccccgauagaggaggaccggu	chr3:139303000-139303268(-)$1	268	126	157	14.6123
ugagggggaucuggcugcgacaucugucacc	chr10:22222013-22222221(+)$1	208	63	94	12.7265
ggacgaccauccccgauagaggaggaccggu	chr6:52860426-52860628(+)$1	202	137	168	13.9875
guuccaugugcgucccucccgaagcugcgug	chr13:99857999-99858207(+)$1	208	65	96	14.4924
ggaugaccaucccugauagaggaggacuggu	chr15:77028928-77029193(+)$1	265	199	230	13.4001
ggaagaccaucccugauagaggaggaccggu	chr18:1323886-1324123(-)$1	237	183	214	14.7596
gccggcccgUGGGUCCGAUCAGGGGCUGGGC	chr4:53578745-53578964(+)$1	219	1	32	10.7467
cgaucuggcugcgacaucugucaccccauug	chr16:81995432-81995673(+)$1	241	109	140	11.0738
ugagggcgaucuggcugugacaucugucacc	chr9:77414736-77414943(+)$1	207	79	110	12.9924
ggacgaccauccccgacagaggaggaccagu	chr14:90178875-90179100(+)$1	225	125	156	15.2016
gugagggcgaucuggcugcgacaucugucac	chr14:90178792-90178996(+)$1	204	66	97	11.5422
acAgaugugagggugaucuggcugcgacauc	chr15:47564691-47564906(+)$1	215	100	131	12.1633
cgaucuggcugcgaaaucugucaccccauug	chr5:109035391-109035607(-)$1	216	83	114	17.2794
ggacgaccauccccgauagaggaggaccggu	chr12:112704857-112705108(+)$1	251	169	200	13.9875
cuccguugaagaggacgaccauccccaacag	chr7:154973557-154973794(+)$1	237	165	196	12.9549
ggaugaccaucccugauagaggaggacuggu	chr6:151640730-151640952(+)$1	222	183	214	13.6304
caaucuggcugcgacauuugucaccccauug	chr5:143915092-143915295(-)$1	203	73	104	10.8016
cgaucuggcugcgacaucugucaccccauug	chr16:81995417-81995628(+)$1	211	124	155	11.0738
cauugaucaccaggguugauucggcugaucu	chr20:33969453-33969711(-)$1	258	138	169	12.8888
cuccagacacauccaaaugaggcacugcaug	chr4:6998909-6999151(+)$1	242	96	127	15.3721
GGUAUUGCCAUUGCUUCACUGUUGGCUUUGA	chr17:33900633-33900874(+)$1	241	73	104	13.3494
gugagggcgaucuggcugcgacaucugucac	chr14:90178819-90179056(+)$1	237	39	70	11.5422
cgcggagggcuggcgggcgagcgcgggcagg	chr2:97535519-97535828(-)$1	309	104	135	11.2811
gcuccaugugcaucccuccugaagcugcaca	chr11:16863753-16863987(+)$1	234	149	180	12.8021
gaaugaccauccccgaugaaggaggaccggu	chr4:121982436-121982734(-)$1	298	247	278	13.6121
ugagggcgaucuggcugcgacaucugucacg	chr4:7113986-7114204(-)$1	218	83	114	13.1069
AUAAAACUCCAGGUAAAAAGACCAUUUUUGU	chr9:103343524-103343762(-)$1	238	4	35	13.3785
cgaucuggcugcgaaaucugucaccccauug	chr5:109035336-109035580(-)$1	244	56	87	17.2794
guuccaugugcgucccucccgaagcugcgug	chr13:99858007-99858218(+)$1	211	57	88	14.4924
ggacgaccauccccgauagaggaggaccggu	chr6:52860423-52860626(+)$1	203	140	171	13.9875
AUUUGGAGCUGUAUUUCACUCAACUUUAAAU	chr6:151640723-151640930(+)$1	207	6	37	10.4678
ggacgaccauccccaauagaggaggaccggu	chr17:70660034-70660285(-)$1	251	140	171	13.9875
GUUUUACAUAAUGCAUCUCAGUAUAAAACAU	chr1:173760923-173761127(+)$1	204	150	181	13.6930
ggggcUGCGCGAGGCACAGGCGCCGCGCCCA	chr4:53578729-53578945(+)$1	216	163	194	11.6642
aggacgacauccccaauagaggaggaccgau	chr3:56106080-56106332(+)$1	252	195	226	14.5971
ugagggggaucuggcugcgacaucugucacc	chr10:22221971-22222213(+)$1	242	105	136	12.7265
ugagggcgaucuggcugcgacaucugucacc	chr5:6848470-6848676(-)$1	206	106	137	12.9924
cauugaucaccaggguugauucggcugaucu	chr20:11799598-11799841(-)$1	243	139	170	12.3243
ggaugaccauccccgauagaggaggaccggu	chr3:139303078-139303332(-)$1	254	190	221	13.6121
gugaguagcugcgcuccccugcuagaaccuc	chr22:37451049-37451293(-)$1	244	99	130	16.0198

#DB
((((((.(....((..(.((((((((((.((	chr1:31316625-31316877(+)$1	1	49	80	12.6962
((((((((..(.((......)).).)))..)	chr5:109035407-109035635(-)$1	1	111	142	16.1118
((((((((....((..(.((((((((((...	chr10:22222036-22222265(+)$1	1	40	71	12.7265
((((((((..(.((......)).).)))..)	chr5:109035380-109035591(-)$1	1	67	98	17.2794
((((((.(....((..(.((((((((((...	chr5:6848434-6848670(-)$1	1	100	131	12.9924
((((((...(((((......)).))).))))	chr10:6191565-6191788(+)$1	1	166	197	14.9709
(((((((.(....((..(.((((((((((.(	chr14:90178812-90179014(+)$1	1	46	77	11.5422
(.(((((((...((.....)).))))))).)	chr4:53578764-53579011(+)$1	1	7	38	11.2625
((.(((.....(((......)))....))).	chr19:2270090-2270359(+)$1	1	57	88	13.1981
(((((...(((.((......)))))...)))	chr22:37451104-37451328(-)$1	1	134	165	16.0198
(.....((((((((......))...))))))	chr11:16863741-16863953(+)$1	1	161	192	12.8021
(...(((((((.((......)).)).)))))	chr1:181808579-181808828(-)$1	1	22	53	14.4924
(((((((.(....((..(.((((((((((.(	chr14:90178856-90179075(+)$1	1	2	33	11.5422
..(((.....((((......)))).)))...	chr19:33353685-33353952(-)$1	1	139	170	11.1049
))).((((.(((((......)).)))..)))	chr3:139303000-139303268(-)$1	1	126	157	14.6123
((((((((....((..(.((((((((((...	chr10:22222013-22222221(+)$1	1	63	94	12.7265
))..((((.(((((......)).)))..)))	chr6:52860426-52860628(+)$1	1	137	168	13.9875
(...(((((((.((......)).)).)))))	chr13:99857999-99858207(+)$1	1	65	96	14.4924
))..((((((((((......)).))).))))	chr15:77028928-77029193(+)$1	1	199	230	13.4001
))((((((.(((((......)).)))..)))	chr18:1323886-1324123(-)$1	1	183	214	14.7596
.(((((((.(((......))).))))))).)	chr4:53578745-53578964(+)$1	1	1	32	10.7467
((((((((..(.(((....))).).)))..)	chr16:81995432-81995673(+)$1	1	109	140	11.0738
((((((.(....((..(.((((((((((...	chr9:77414736-77414943(+)$1	1	79	110	12.9924
))..(((..(((((......)).)))...))	chr14:90178875-90179100(+)$1	1	125	156	15.2016
(((((((.(....((..(.((((((((((.(	chr14:90178792-90178996(+)$1	1	66	97	11.5422
((((((((...(((......)))...)))))	chr15:47564691-47564906(+)$1	1	100	131	12.1633
((((((((..(.((......)).).)))..)	chr5:109035391-109035607(-)$1	1	83	114	17.2794
))..((((.(((((......)).)))..)))	chr12:112704857-112705108(+)$1	1	169	200	13.9875
((((.(((..(.(((......))).)..)))	chr7:154973557-154973794(+)$1	1	165	196	12.9549
.((.((((((((((......)).))).))))	chr6:151640730-151640952(+)$1	1	183	214	13.6304
(.((((((..(.(((....))).).)))..)	chr5:143915092-143915295(-)$1	1	73	104	10.8016
((((((((..(.(((....))).).)))..)	chr16:81995417-81995628(+)$1	1	124	155	11.0738
....(((((((.((......)))).))))).	chr20:33969453-33969711(-)$1	1	138	169	12.8888
(((((.(..((.((......))...))..).	chr4:6998909-6999151(+)$1	1	96	127	15.3721
(((...((((..((......))))))....)	chr17:33900633-33900874(+)$1	1	73	104	13.3494
(((((((.(....((..(.((((((((((.(	chr14:90178819-90179056(+)$1	1	39	70	11.5422
(((.....(((.(((......))).)))..)	chr2:97535519-97535828(-)$1	1	104	135	11.2811
(.....((((((((......))...))))))	chr11:16863753-16863987(+)$1	1	149	180	12.8021
....((((.(((((......)).)))..)))	chr4:121982436-121982734(-)$1	1	247	278	13.6121
((((((.(....((..(.((((((((((..(	chr4:7113986-7114204(-)$1	1	83	114	13.1069
((((((.....(((......)))..))))))	chr9:103343524-103343762(-)$1	1	4	35	13.3785
((((((((..(.((......)).).)))..)	chr5:109035336-109035580(-)$1	1	56	87	17.2794
(...(((((((.((......)).)).)))))	chr13:99858007-99858218(+)$1	1	57	88	14.4924
))..((((.(((((......)).)))..)))	chr6:52860423-52860626(+)$1	1	140	171	13.9875
((((((((.((.........)).))))))))	chr6:151640723-151640930(+)$1	1	6	37	10.4678
))..((((.(((((......)).)))..)))	chr17:70660034-70660285(-)$1	1	140	171	13.9875
((((((.....(((......)))))))))))	chr1:173760923-173761127(+)$1	1	150	181	13.6930
).)((((.(((.(((......))).))).))	chr4:53578729-53578945(+)$1	1	163	194	11.6642
((((((...(((((......)).))).)).)	chr3:56106080-56106332(+)$1	1	195	226	14.5971
((((((((....((..(.((((((((((...	chr10:22221971-22222213(+)$1	1	105	136	12.7265
((((((.(....((..(.((((((((((...	chr5:6848470-6848676(-)$1	1	106	137	12.9924
....(((((((.((......)))).))))).	chr20:11799598-11799841(-)$1	1	139	170	12.3243
....((((.(((((......)).)))..)))	chr3:139303078-139303332(-)$1	1	190	221	13.6121
(((((...(((.((......)))))...)))	chr22:37451049-37451293(-)$1	1	99	130	16.0198

#PSSM
g : 0.29	d : 0.25	e : 0.09	i : 0.07	f : 0.05	c : 0.05	h : 0.03	% : 0.03	! : 0.01	[ : 0.01	: : 0.01	# : 0.01	$ : 0.01	
g : 0.31	d : 0.14	i : 0.07	e : 0.07	f : 0.05	$ : 0.05	" : 0.05	h : 0.03	[ : 0.03	c : 0.03	% : 0.03	! : 0.01	b : 0.01	# : 0.01	] : 0.01	
g : 0.33	: : 0.11	c : 0.09	i : 0.07	f : 0.05	$ : 0.05	" : 0.05	e : 0.05	h : 0.03	% : 0.03	[ : 0.01	d : 0.01	b : 0.01	# : 0.01	a : 0.01	
g : 0.33	: : 0.12	c : 0.11	i : 0.07	$ : 0.07	" : 0.07	f : 0.03	h : 0.03	d : 0.03	% : 0.03	[ : 0.01	# : 0.01	e : 0.01	
g : 0.33	d : 0.14	c : 0.12	e : 0.12	i : 0.07	$ : 0.05	f : 0.03	h : 0.03	[ : 0.01	" : 0.01	b : 0.01	
g : 0.24	c : 0.18	d : 0.14	e : 0.12	i : 0.07	$ : 0.07	" : 0.05	h : 0.03	f : 0.01	[ : 0.01	b : 0.01	
c : 0.16	d : 0.16	e : 0.12	g : 0.11	[ : 0.09	$ : 0.09	i : 0.07	" : 0.07	f : 0.05	h : 0.01	a : 0.01	
c : 0.14	d : 0.14	e : 0.12	a : 0.09	[ : 0.09	$ : 0.09	i : 0.07	" : 0.07	f : 0.05	g : 0.03	! : 0.03	h : 0.01	
! : 0.18	[ : 0.18	# : 0.14	e : 0.12	a : 0.07	$ : 0.07	c : 0.07	" : 0.05	f : 0.03	g : 0.01	d : 0.01	
c : 0.33	# : 0.22	! : 0.14	b : 0.12	$ : 0.07	" : 0.03	f : 0.03	d : 0.01	
c : 0.33	# : 0.22	a : 0.14	b : 0.12	$ : 0.05	" : 0.03	f : 0.03	d : 0.01	! : 0.01	
[ : 0.33	c : 0.33	# : 0.22	f : 0.03	" : 0.01	d : 0.01	! : 0.01	r : 0.01	
b : 0.68	c : 0.18	# : 0.07	d : 0.01	o : 0.01	r : 0.01	
b : 0.75	c : 0.18	d : 0.01	o : 0.01	r : 0.01	
o : 0.62	! : 0.14	c : 0.11	b : 0.07	n : 0.01	r : 0.01	
o : 0.68	! : 0.22	m : 0.05	n : 0.01	r : 0.01	
o : 0.68	a : 0.14	! : 0.07	m : 0.05	n : 0.01	r : 0.01	
o : 0.68	[ : 0.14	a : 0.07	m : 0.05	n : 0.01	r : 0.01	
o : 0.66	= : 0.14	[ : 0.07	m : 0.05	n : 0.01	c : 0.01	r : 0.01	
o : 0.66	= : 0.22	c : 0.07	b : 0.01	r : 0.01	
b : 0.55	= : 0.22	c : 0.14	o : 0.05	d : 0.01	
b : 0.53	= : 0.22	c : 0.18	] : 0.03	d : 0.01	
] : 0.44	= : 0.22	c : 0.16	3 : 0.05	g : 0.03	d : 0.03	b : 0.03	
c : 0.33	= : 0.22	a : 0.12	b : 0.09	3 : 0.07	g : 0.05	d : 0.03	4 : 0.01	2 : 0.01	i : 0.01	
c : 0.27	] : 0.24	= : 0.22	3 : 0.07	g : 0.05	b : 0.05	4 : 0.01	d : 0.01	2 : 0.01	i : 0.01	
c : 0.42	= : 0.22	g : 0.07	3 : 0.05	] : 0.05	f : 0.03	e : 0.03	4 : 0.01	a : 0.01	b : 0.01	d : 0.01	i : 0.01	
= : 0.22	c : 0.18	2 : 0.16	e : 0.09	] : 0.07	g : 0.07	3 : 0.05	4 : 0.03	f : 0.03	h : 0.01	b : 0.01	i : 0.01	
= : 0.22	c : 0.20	2 : 0.18	e : 0.12	g : 0.07	3 : 0.05	h : 0.03	f : 0.03	4 : 0.01	i : 0.01	b : 0.01	
2 : 0.16	e : 0.12	d : 0.12	" : 0.11	= : 0.07	g : 0.07	c : 0.07	f : 0.05	h : 0.03	4 : 0.03	[ : 0.01	3 : 0.01	! : 0.01	i : 0.01	] : 0.01	b : 0.01	
2 : 0.14	d : 0.14	e : 0.12	" : 0.11	c : 0.09	[ : 0.07	] : 0.05	f : 0.05	h : 0.03	4 : 0.03	g : 0.03	b : 0.01	a : 0.01	! : 0.01	i : 0.01	
d : 0.18	e : 0.12	" : 0.11	g : 0.11	c : 0.11	b : 0.09	f : 0.09	h : 0.03	] : 0.03	5 : 0.03	4 : 0.01	a : 0.01	i : 0.01	

#score	721.3474230937312
#seq	54
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_UTR_m1_run2.txt

#BEAR
eee[ffffff!!a[cccnnnnnccc]a22ffffff]e	chr3:51533782-51534063(-)$1	281	7	44	14.2789
iiiiiiiii####ddddmmmmdddd4444iiiiiiii	chr16:1910301-1910574(-)$1	273	20	57	14.2254
dd!!ggggggg"""cccnnnnnccc333gggggggdd	chr8:124381959-124382202(-)$1	243	132	169	16.2073
:ggggggg[bb[ddddoooooodddd]bb]ggggggg	chr7:156962894-156963189(+)$1	295	40	77	13.8105
dddd[ffffff[ddddoooooodddd333ffffff]d	chr4:48610944-48611186(-)$1	242	79	116	14.8700
ccc!!eeeee####cccnnnnnccc4444eeeee]cc	chr1:39775248-39775466(+)$1	218	20	57	14.9805
dddd[eeeee!!eeeeennnnneeeeeeeeee]dddd	chr9:131825750-131826011(+)$1	261	77	114	12.9123
Dggggggg!!eeeeeddddllldddd22eeeee22gg	chr11:65325120-65325404(-)$1	284	118	155	12.3107
c"""ffffff####ddddllldddd333ffffff333	chr16:88785986-88786223(-)$1	237	58	95	13.9079
ee[eeeee!!bb"""bbnnnnnbb333bb4444eeee	chr19:18642713-18642961(-)$1	248	171	208	12.0226
ggg!!ccc####ddddoooooodddd333ccc22ggg	chr17:62498182-62498441(-)$1	259	20	57	16.6685
e"""ccc[a!!a[cccooooooccc]a]a]ccc333e	chr16:84216581-84216857(-)$1	276	218	255	15.0109
hhheeeee[ccceeeeennnnneeeee]ccc]eeeee	chr2:97530858-97531109(-)$1	251	26	63	13.7429
ffffff!!a"""eeeeellleeeeea22ffffffiii	chr17:75483452-75483735(+)$1	283	168	205	12.6451
!eeeeeccc[cccddddoooooodddd]ccc333ccc	chr17:27438442-27438671(-)$1	229	105	142	14.3573
==========[ffffffnnnnnffffff=========	chr9:123292273-123292519(-)$1	246	112	149	13.3059
b"""ffffff"""eeeeellleeeee333ffffff33	chr12:69646788-69647035(+)$1	247	49	86	13.6584
!ccc[ccc!!eeeeeooooooeeeee22ccc]ccc22	chr1:32636207-32636455(+)$1	248	18	55	13.4954
fff!!ccc!!eeeeeooooooeeeee4444ccc22ff	chr22:19035878-19036171(-)$1	293	189	226	13.3864
eeee[ggggggg[cccbboooooobb22cccgggggg	chr7:100225430-100225666(-)$1	236	175	212	12.3653
b[dddd[a[bb!!ddddoooooodddd333bb]a]dd	chr16:22336984-22337221(+)$1	237	72	109	13.8964
ccc!!dddd!!a[ddddnnnnndddd]a22dddd]cc	chr6:31726774-31727049(+)$1	275	225	262	14.9119
iiiiii[ccc[bbddddnnnnndddd]bbccc]iiii	chr3:47465371-47465608(-)$1	237	136	173	15.1500
dd[ggggggg!!eeeeennnnneeeee22gggggggd	chr21:34893112-34893359(-)$1	247	186	223	15.7743
ee[eeeee[ccc[ddddnnnnndddd]ccceeeeeee	chr19:15514719-15514953(-)$1	234	192	229	15.0497
ddda[ccc[ccc!!cccooooooccc]cccccc]a]d	chr22:50685268-50685496(-)$1	228	183	220	13.9858
ggffffff!!cccddddoooooodddd]ccc4444ff	chr7:140069334-140069583(-)$1	249	124	161	13.9472
dddd[eeeee[ccccccnnnnnccc]ccc]eeeeedd	chr17:46051911-46052148(+)$1	237	136	173	13.0877
iiiiiiii!!gggggggnnnnngggggggiiiiiiii	chr12:62894461-62894702(+)$1	241	200	237	14.3746
dddd!!gggggggcccooooooccc]ggggggg22dd	chr16:89958499-89958743(+)$1	244	21	58	13.0150
ccbbbb!!ccc!!ddddnnnnndddd22ccc22bb]b	chr1:1249133-1249417(-)$1	284	187	224	14.1727
c[eeeee[bb[bbddddnnnnndddd22bb]bb]eee	chr12:53553306-53553575(-)$1	269	198	235	13.6569
heeeeebbbb[bbddddnnnnndddd]bbbb333bb]	chr1:150198837-150199081(-)$1	244	155	192	12.0565
ffffff[a"""a[eeeeellleeeeea]a]ffffffb	chr3:47046629-47046899(+)$1	270	164	201	12.4465
ggggg[a[ccc"""cccooooooccc4444cccaggg	chr21:47648280-47648531(-)$1	251	99	136	14.8077
ddd"""dddd"""ddddnnnnndddd333dddd]ddd	chr19:40738211-40738463(-)$1	252	40	77	15.3435
eeee[bb[ccc[ddddooooooddddccc]bbeeeee	chr19:3028610-3028877(-)$1	267	187	224	13.0345
gggggggccceeeeeooooooeeeee22ccc]ggggg	chr7:156931586-156931856(+)$1	270	230	267	13.8120
ddd"""ccc####eeeeellleeeee4444ccc333d	chr11:43400691-43400970(+)$1	279	109	146	14.3810
ddd[ggggggg!!cccoooooocccggggggg4444d	chr6:31725952-31726170(+)$1	218	43	80	14.1091
!!dddd[ggggggg[ddddllldddd]ggggggg333	chr19:54970868-54971116(+)$1	248	10	47	12.6245
iiiiiiii!!a!!ddddnnnnndddd22a]iiiiiii	chr19:1104379-1104627(+)$1	248	176	213	17.9244
gggggg[a"""eeeeennnnneeeee22a]ggggggg	chr12:124979691-124979937(-)$1	246	139	176	15.1218
+bb[=============nnnnn=============]b	chr6:31730218-31730443(+)$1	225	167	204	13.9040
eeeeeccc[dddd[cccnnnnncccdddd4444ccc]	chr12:133252220-133252432(-)$1	212	73	110	12.4458
ggggggg!!ccc[ddddnnnnnddddccc]ggggggg	chr8:102217327-102217642(-)$1	315	226	263	16.2276
"""eeeee!!eeeeeooooooeeeee4444eeeee22	chr10:21823332-21823550(+)$1	218	123	160	12.8502
:ccc[iiiiiiiii[ddddllldddd22iiiiiiiii	chr22:22040698-22040948(+)$1	250	36	73	13.0048
bb!!eeeee[ccc!!bbnnnnnbbccc333eeeee]b	chr17:64641420-64641738(+)$1	318	122	159	12.9049
ccc[ggggggg!!ddddlllddddggggggg]cccgg	chr11:67810738-67811059(+)$1	321	51	88	13.2600
ffffggggggg[eeeeennnnneeeee]ggggggg::	chr22:19486523-19486763(+)$1	240	186	223	12.7730
bb[gggggggdddd[bblllbb]dddd333ggggggg	chr19:35769508-35769801(+)$1	293	0	37	11.7472

#otherMatches

#Seq PSSM
GGUGCACGUAGCGCGCGAGUGACGCAUAAUAUGUGGG	chr3:51533782-51534063(-)$1	281	7	44	14.2789
AACAGGAUGUUAUUUAGGAUGUUAGUGUUUAUCUUGU	chr16:1910301-1910574(-)$1	273	20	57	14.2254
CCAUUGGAAAGUAAGUGCUAUACAUACUCUUUCCAGG	chr8:124381959-124382202(-)$1	243	132	169	16.2073
AUCAUAAGAAUUGUGUGUCCAAAUACUAUAUUUAUGG	chr7:156962894-156963189(+)$1	295	40	77	13.8105
UGUUUGUUCUUUUGUUAUUUUAGAUAUUCAGGAACCA	chr4:48610944-48611186(-)$1	242	79	116	14.8700
GGCCCUUUGGCAUCAGCUGCAUGUUAACACCAAAAGC	chr1:39775248-39775466(+)$1	218	20	57	14.9805
UUCUGGAAGACAAGAGUAACCAGCUUUUCUUCGGGAA	chr9:131825750-131826011(+)$1	261	77	114	12.9123
cggggcgcaggcgggggcggggCGCUGGCCCGCGAGC	chr11:65325120-65325404(-)$1	284	118	155	12.3107
GGGAGCCCACCUGACGGGAACCCUGGCUGUGGGCAGG	chr16:88785986-88786223(-)$1	237	58	95	13.9079
GGAGGGGGCCCUCAUUCCUUCAGACCCAGUUUUCCCC	chr19:18642713-18642961(-)$1	248	171	208	12.0226
UCUGUGACCAAAAGUGGUCAAGCACUGGAGUCUGAGG	chr17:62498182-62498441(-)$1	259	20	57	16.6685
GGUGGUGGGGAUGUAGGAGGUGCUAGGACGCACGUAC	chr16:84216581-84216857(-)$1	276	218	255	15.0109
GCCUAGCUGACCUCUGUCUCCCAUAGAUGGUGAGCUG	chr2:97530858-97531109(-)$1	251	26	63	13.7429
GUCCAUCACGCACGGUCAGUGGCCGGGAGUGGGCUGG	chr17:75483452-75483735(+)$1	283	168	205	12.6451
CACUUUCUCCUGGGCCACAGCCAUGGCACCAACUGGG	chr17:27438442-27438671(-)$1	229	105	142	14.3573
AGUUGAAGCUGUCUUUGAAGAGCAAAGAAGCUUUAAU	chr9:123292273-123292519(-)$1	246	112	149	13.3059
CAGAUGAAGACUUAACUGAAGCAGUUCAUUCUUUGGG	chr12:69646788-69647035(+)$1	247	49	86	13.6584
AGGGAAGGAAAAAUAGGUAAAUGUUUCACCUGCCCAU	chr1:32636207-32636455(+)$1	248	18	55	13.4954
AGUGCUGCAAGUUCAUGUGUCUGGACCCAGGUGAGAC	chr22:19035878-19036171(-)$1	293	189	226	13.3864
GUUGCGGGGAGGAGCAGAGCCUGAUCAGUGCCCUUCC	chr7:100225430-100225666(-)$1	236	175	212	12.3653
AGCAGUGCUGCCUCCCUCCCCGCAGGGCCUGCCGGGC	chr16:22336984-22337221(+)$1	237	72	109	13.8964
CAGCAGCUGAGGAAGAGCGUUACUCUACAGCAGCACU	chr6:31726774-31727049(+)$1	275	225	262	14.9119
UGUGGUCUCAACCCCGGUAGACCUGGAGGUGAAGCUG	chr3:47465371-47465608(-)$1	237	136	173	15.1500
GAUGAGGAAAUUUAUAUCAAAUAUGUAUUUUUCUUCU	chr21:34893112-34893359(-)$1	247	186	223	15.7743
CUGCCACUGCCCUGCUUGGCCAAGGUUGGGAGUGGGG	chr19:15514719-15514953(-)$1	234	192	229	15.0497
GAGCCCAGAGGUAAGCCUCACUUGGCCAUCCUGAGCC	chr22:50685268-50685496(-)$1	228	183	220	13.9858
CCCCAGUGCAGAGAAAGCGACUCUUUUCCUCGGCACA	chr7:140069334-140069583(-)$1	249	124	161	13.9472
CGAGCAGGUGUGUGUGGGUCCUCCACCACUCACCUCU	chr17:46051911-46052148(+)$1	237	136	173	13.0877
UAUUUUAGUUGAUAAAAGUAAUUUUUAUUCUAAAAUA	chr12:62894461-62894702(+)$1	241	200	237	14.3746
CGUGCAGGGAUCAGGCAGCCAAGCCUUGGUCCCCACA	chr16:89958499-89958743(+)$1	244	21	58	13.0150
AGCUGUUCAUCCCCUGGACCAACCAGAAGAUCCGCAA	chr1:1249133-1249417(-)$1	284	187	224	14.1727
GUUAGGGAGCUGAUGCAACUGAUGCGCUUCUGCCCCC	chr12:53553306-53553575(-)$1	269	198	235	13.6569
UCUUACCUGCACUGAAAAUUAAUUUCUAGGCAUAGGA	chr1:150198837-150199081(-)$1	244	155	192	12.0565
CCAGCUGCAAAGUGGCCGGUGCGGCCCAGGGGCUGGU	chr3:47046629-47046899(+)$1	270	164	201	12.4465
CCGGCAGACGUGGACCUACCUGCAGGACGAGCGCGCC	chr21:47648280-47648531(-)$1	251	99	136	14.8077
CCUAUCCCAUCUCCUGUACUACACAGUUCAUGGCAGG	chr19:40738211-40738463(-)$1	252	40	77	15.3435
CCCCAGGGGCCGCGGGAGUUCACCUGGGCGCCGGGGC	chr19:3028610-3028877(-)$1	267	187	224	13.0345
gggggcgggcucgggucgccucccggccgccgcgucc	chr7:156931586-156931856(+)$1	270	230	267	13.8120
UUGAAGCAUCCUCAUGACCUAGUCAUAUUAAUGAGAC	chr11:43400691-43400970(+)$1	279	109	146	14.3810
AUCCAGCUCUUUCGGGACAUUGCCCAAGAGUUCUCUG	chr6:31725952-31726170(+)$1	218	43	80	14.1091
GUUUGGAGACUCAUUCUGGAAUCUAGUGUGGGUCAAG	chr19:54970868-54971116(+)$1	248	10	47	12.6245
GGGGCGCGGAGGGCUGGAAAUCCCGGAUCAcgcgccc	chr19:1104379-1104627(+)$1	248	176	213	17.9244
CAUGUCGGGAUCCACACAGCCUGUGGCACAGACGUGG	chr12:124979691-124979937(-)$1	246	139	176	15.1218
AGACGCAGAGUUUUUAGUUUCUCUAGAAAUUUUGUUU	chr6:31730218-31730443(+)$1	225	167	204	13.9040
CACCAUCAUGGUCACCUACAACGGGGACUUUUUUGAC	chr12:133252220-133252432(-)$1	212	73	110	12.4458
CCGCCGGUCAGCUGCCAGAGUGUGGCGCUCCCGGUGG	chr8:102217327-102217642(-)$1	315	226	263	16.2276
GAGCGGUGGGCUgccgggccgggcggggggcgccggg	chr10:21823332-21823550(+)$1	218	123	160	12.8502
UGGCACUGCUGAGGUGCCACCCUGGUUUCCUUGGCAG	chr22:22040698-22040948(+)$1	250	36	73	13.0048
CCAGCCUCUGCGGAAUGGAUCACACUGAGAAGAGGGG	chr17:64641420-64641738(+)$1	318	122	159	12.9049
GGCAGGGCAGGAGGUUGGAGCAGCCCUGCCCAGCCCC	chr11:67810738-67811059(+)$1	321	51	88	13.2600
CUGUGCUGUGGCCAGGUGCACAGCCUGACCAUAGCCA	chr22:19486523-19486763(+)$1	240	186	223	12.7730
GGGUGUCCUUGGGCUGAGCCUCUGCCCUGUGAGGACG	chr19:35769508-35769801(+)$1	293	0	37	11.7472

#DB
(((.((((((..(.(((.....))).)..)))))).)	chr3:51533782-51534063(-)$1	1	7	44	14.2789
(((((((((....((((....))))....))))))))	chr16:1910301-1910574(-)$1	1	20	57	14.2254
((..(((((((...(((.....)))...)))))))))	chr8:124381959-124382202(-)$1	1	132	169	16.2073
.(((((((.((.((((......)))).)).)))))))	chr7:156962894-156963189(+)$1	1	40	77	13.8105
((((.((((((.((((......))))...)))))).)	chr4:48610944-48611186(-)$1	1	79	116	14.8700
(((..(((((....(((.....)))....))))).))	chr1:39775248-39775466(+)$1	1	20	57	14.9805
((((.(((((..(((((.....)))))))))).))))	chr9:131825750-131826011(+)$1	1	77	114	12.9123
((((((((..(((((((((...))))..)))))..))	chr11:65325120-65325404(-)$1	1	118	155	12.3107
(...((((((....((((...))))...))))))...	chr16:88785986-88786223(-)$1	1	58	95	13.9079
((.(((((..((...((.....))...))....))))	chr19:18642713-18642961(-)$1	1	171	208	12.0226
(((..(((....((((......))))...)))..)))	chr17:62498182-62498441(-)$1	1	20	57	16.6685
(...(((.(..(.(((......))).).).)))...)	chr16:84216581-84216857(-)$1	1	218	255	15.0109
((((((((.((((((((.....))))).))).)))))	chr2:97530858-97531109(-)$1	1	26	63	13.7429
((((((..(...(((((...))))))..)))))))))	chr17:75483452-75483735(+)$1	1	168	205	12.6451
.((((((((.(((((((......)))).)))...)))	chr17:27438442-27438671(-)$1	1	105	142	14.3573
((((((((((.((((((.....)))))))))))))))	chr9:123292273-123292519(-)$1	1	112	149	13.3059
(...((((((...(((((...)))))...))))))..	chr12:69646788-69647035(+)$1	1	49	86	13.6584
.(((.(((..(((((......)))))..))).)))..	chr1:32636207-32636455(+)$1	1	18	55	13.4954
(((..(((..(((((......)))))....)))..))	chr22:19035878-19036171(-)$1	1	189	226	13.3864
((((.(((((((.(((((......))..)))))))))	chr7:100225430-100225666(-)$1	1	175	212	12.3653
(.((((.(.((..((((......))))...)).).))	chr16:22336984-22337221(+)$1	1	72	109	13.8964
(((..((((..(.((((.....)))).)..)))).))	chr6:31726774-31727049(+)$1	1	225	262	14.9119
((((((.(((.((((((.....)))).))))).))))	chr3:47465371-47465608(-)$1	1	136	173	15.1500
((.(((((((..(((((.....)))))..))))))))	chr21:34893112-34893359(-)$1	1	186	223	15.7743
((.(((((.(((.((((.....)))).))))))))))	chr19:15514719-15514953(-)$1	1	192	229	15.0497
((((.(((.(((..(((......))).)))))).).)	chr22:50685268-50685496(-)$1	1	183	220	13.9858
))((((((..(((((((......)))).)))....))	chr7:140069334-140069583(-)$1	1	124	161	13.9472
((((.(((((.((((((.....))).))).)))))))	chr17:46051911-46052148(+)$1	1	136	173	13.0877
((((((((..(((((((.....)))))))))))))))	chr12:62894461-62894702(+)$1	1	200	237	14.3746
((((..((((((((((......))).)))))))..))	chr16:89958499-89958743(+)$1	1	21	58	13.0150
((((((..(((..((((.....))))..)))..)).)	chr1:1249133-1249417(-)$1	1	187	224	14.1727
(.(((((.((.((((((.....))))..)).)).)))	chr12:53553306-53553575(-)$1	1	198	235	13.6569
((((((((((.((((((.....)))).))))...)).	chr1:150198837-150199081(-)$1	1	155	192	12.0565
((((((.(...(.(((((...)))))).).)))))))	chr3:47046629-47046899(+)$1	1	164	201	12.4465
(((((.(.(((...(((......)))....)))))))	chr21:47648280-47648531(-)$1	1	99	136	14.8077
(((...((((...((((.....))))...)))).)))	chr19:40738211-40738463(-)$1	1	40	77	15.3435
((((.((.(((.((((......))))))).)))))))	chr19:3028610-3028877(-)$1	1	187	224	13.0345
(((((((((((((((......)))))..))).)))))	chr7:156931586-156931856(+)$1	1	230	267	13.8120
(((...(((....(((((...)))))....)))...)	chr11:43400691-43400970(+)$1	1	109	146	14.3810
(((.(((((((..(((......))))))))))....)	chr6:31725952-31726170(+)$1	1	43	80	14.1091
..((((.(((((((.((((...)))).)))))))...	chr19:54970868-54971116(+)$1	1	10	47	12.6245
((((((((..(..((((.....))))..).)))))))	chr19:1104379-1104627(+)$1	1	176	213	17.9244
((((((.(...(((((.....)))))..).)))))))	chr12:124979691-124979937(-)$1	1	139	176	15.1218
.((.(((((((((((((.....))))))))))))).)	chr6:31730218-31730443(+)$1	1	167	204	13.9040
((((((((.((((.(((.....)))))))....))).	chr12:133252220-133252432(-)$1	1	73	110	12.4458
(((((((..(((.((((.....))))))).)))))))	chr8:102217327-102217642(-)$1	1	226	263	16.2276
...(((((..(((((......)))))....)))))..	chr10:21823332-21823550(+)$1	1	123	160	12.8502
.(((.(((((((((.((((...))))..)))))))))	chr22:22040698-22040948(+)$1	1	36	73	13.0048
((..(((((.(((..((.....)))))...))))).)	chr17:64641420-64641738(+)$1	1	122	159	12.9049
(((.(((((((..((((...))))))))))).)))((	chr11:67810738-67811059(+)$1	1	51	88	13.2600
))))(((((((.(((((.....))))).)))))))..	chr22:19486523-19486763(+)$1	1	186	223	12.7730
((.(((((((((((.((...)).))))...)))))))	chr19:35769508-35769801(+)$1	1	0	37	11.7472

#PSSM
d : 0.19	e : 0.13	c : 0.11	g : 0.11	i : 0.07	f : 0.07	b : 0.07	! : 0.05	: : 0.03	h : 0.03	D : 0.01	= : 0.01	+ : 0.01	" : 0.01	
d : 0.19	e : 0.15	g : 0.15	c : 0.11	i : 0.07	" : 0.07	f : 0.07	b : 0.05	[ : 0.03	h : 0.01	= : 0.01	! : 0.01	
d : 0.19	e : 0.13	g : 0.13	c : 0.09	f : 0.09	i : 0.07	" : 0.07	[ : 0.07	! : 0.03	b : 0.03	h : 0.01	= : 0.01	
e : 0.19	g : 0.15	! : 0.11	d : 0.11	" : 0.09	[ : 0.07	i : 0.07	f : 0.07	c : 0.03	= : 0.01	a : 0.01	b : 0.01	
g : 0.23	e : 0.17	[ : 0.15	f : 0.11	! : 0.09	i : 0.07	= : 0.03	d : 0.03	" : 0.03	c : 0.01	b : 0.01	
g : 0.23	e : 0.21	f : 0.13	c : 0.11	i : 0.09	d : 0.05	= : 0.03	b : 0.03	" : 0.03	! : 0.01	[ : 0.01	
g : 0.23	e : 0.17	c : 0.15	f : 0.09	[ : 0.09	i : 0.07	! : 0.03	= : 0.03	d : 0.03	b : 0.03	a : 0.01	
g : 0.21	c : 0.17	e : 0.15	f : 0.09	i : 0.07	[ : 0.07	! : 0.05	a : 0.05	= : 0.03	d : 0.03	b : 0.01	
g : 0.17	! : 0.17	c : 0.13	[ : 0.11	f : 0.07	e : 0.07	i : 0.03	a : 0.03	= : 0.03	d : 0.03	b : 0.03	" : 0.03	# : 0.01	
! : 0.19	g : 0.17	c : 0.17	f : 0.07	b : 0.07	# : 0.05	e : 0.05	" : 0.05	[ : 0.03	= : 0.03	d : 0.03	i : 0.01	
c : 0.19	g : 0.15	! : 0.09	# : 0.09	e : 0.09	" : 0.09	[ : 0.09	b : 0.05	d : 0.03	f : 0.01	a : 0.01	= : 0.01	i : 0.01	
! : 0.15	c : 0.15	e : 0.11	# : 0.09	" : 0.09	[ : 0.07	b : 0.07	g : 0.07	a : 0.05	d : 0.03	f : 0.01	= : 0.01	i : 0.01	
e : 0.21	d : 0.11	[ : 0.11	! : 0.11	" : 0.09	# : 0.07	c : 0.07	b : 0.05	g : 0.05	a : 0.01	f : 0.01	= : 0.01	i : 0.01	
d : 0.36	e : 0.26	c : 0.09	" : 0.05	[ : 0.03	# : 0.03	! : 0.03	g : 0.03	f : 0.01	= : 0.01	i : 0.01	
d : 0.36	e : 0.26	c : 0.21	[ : 0.05	" : 0.01	f : 0.01	g : 0.01	= : 0.01	! : 0.01	
d : 0.42	c : 0.21	e : 0.17	o : 0.07	b : 0.05	f : 0.01	g : 0.01	= : 0.01	
d : 0.34	o : 0.21	e : 0.15	c : 0.13	b : 0.07	f : 0.01	g : 0.01	n : 0.01	= : 0.01	
n : 0.46	o : 0.30	d : 0.07	l : 0.05	e : 0.05	m : 0.01	b : 0.01	
n : 0.46	o : 0.32	l : 0.13	d : 0.05	m : 0.01	
n : 0.46	o : 0.32	l : 0.19	m : 0.01	
n : 0.46	o : 0.32	l : 0.13	m : 0.01	e : 0.01	d : 0.01	b : 0.01	
n : 0.44	o : 0.24	e : 0.17	d : 0.05	l : 0.05	b : 0.01	
d : 0.36	e : 0.24	c : 0.15	o : 0.11	b : 0.03	f : 0.01	g : 0.01	= : 0.01	] : 0.01	
d : 0.44	e : 0.24	c : 0.19	b : 0.03	f : 0.01	o : 0.01	g : 0.01	= : 0.01	
d : 0.42	e : 0.24	c : 0.21	g : 0.03	3 : 0.01	f : 0.01	b : 0.01	= : 0.01	
d : 0.40	e : 0.23	] : 0.07	3 : 0.05	c : 0.05	g : 0.05	4 : 0.03	a : 0.01	f : 0.01	b : 0.01	= : 0.01	
2 : 0.19	3 : 0.13	] : 0.13	4 : 0.11	d : 0.09	e : 0.07	c : 0.07	g : 0.07	a : 0.05	f : 0.01	= : 0.01	
2 : 0.23	3 : 0.17	4 : 0.11	] : 0.11	c : 0.09	g : 0.09	b : 0.07	e : 0.01	f : 0.01	a : 0.01	= : 0.01	d : 0.01	
c : 0.23	g : 0.13	3 : 0.13	4 : 0.11	b : 0.09	a : 0.07	2 : 0.05	e : 0.03	f : 0.03	= : 0.03	d : 0.01	i : 0.01	
c : 0.21	] : 0.15	g : 0.13	4 : 0.11	f : 0.09	i : 0.05	e : 0.05	3 : 0.05	= : 0.03	b : 0.03	2 : 0.01	d : 0.01	
c : 0.26	g : 0.21	e : 0.13	f : 0.11	i : 0.07	b : 0.05	4 : 0.03	= : 0.03	d : 0.03	] : 0.01	
g : 0.21	e : 0.13	c : 0.13	f : 0.11	i : 0.07	] : 0.07	4 : 0.05	b : 0.05	3 : 0.03	= : 0.03	d : 0.03	2 : 0.01	
g : 0.21	e : 0.15	c : 0.13	f : 0.11	i : 0.07	4 : 0.07	] : 0.05	2 : 0.03	3 : 0.03	= : 0.03	d : 0.03	b : 0.01	
g : 0.19	e : 0.15	f : 0.11	i : 0.09	2 : 0.07	3 : 0.07	c : 0.05	] : 0.05	d : 0.03	= : 0.03	a : 0.03	4 : 0.03	b : 0.01	
g : 0.21	e : 0.15	i : 0.11	f : 0.07	3 : 0.07	c : 0.07	] : 0.05	2 : 0.05	d : 0.03	= : 0.03	4 : 0.03	b : 0.03	a : 0.01	
g : 0.21	] : 0.11	i : 0.11	d : 0.11	3 : 0.09	e : 0.09	c : 0.07	f : 0.05	2 : 0.03	= : 0.01	b : 0.01	4 : 0.01	: : 0.01	
d : 0.21	g : 0.19	e : 0.13	i : 0.11	b : 0.07	c : 0.05	3 : 0.05	2 : 0.03	f : 0.03	] : 0.03	= : 0.01	: : 0.01	

#score	723.9660879413688
#seq	52
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_transcript_m3_run1.txt

#BEAR
dddbb[ddddnnnnndddd]bb]ddd	chr9:94601999-94602363(-)$1	364	213	239	10.9852
b[eeeeecccnnnnnccc]eeeee]b	chr17:76118829-76119106(-)$1	277	148	174	12.6712
dd[a[eeeeennnnneeeee]a]ddd	chr12:120907161-120907575(-)$1	414	36	62	12.2543
==========nnnnn==========4	chr6:10747948-10748214(+)$1	266	214	240	14.5627
[iiiiiiiiinnnnniiiiiiiii]d	chr9:139249205-139249520(+)$1	315	133	159	13.9883
a[ddddddddnnnnndddd]dddd]a	chr2:97560691-97560982(-)$1	291	177	203	11.6737
affffff!!annnnna22ffffff]a	chr7:158459765-158460126(-)$1	361	147	173	11.9623
dddda[ddddnnnnndddd]a]dddd	chr4:80994086-80994359(-)$1	273	104	130	11.7377
#dddd[aabbnnnnnbb]a]a]dddd	chr17:79281016-79281285(-)$1	269	188	214	12.3106
a[ddddddddnnnnndddd]dddd]a	chr2:97560635-97560891(-)$1	256	86	112	11.6737
ccc!!bb[bbnnnnnbb]bb22ccc7	chr3:185542662-185542933(-)$1	271	128	154	11.4871
=========[allla]==========	chr16:88827965-88828255(-)$1	290	157	183	10.2965
[a[eeeee[annnnna]eeeee]a]b	chr11:64073198-64073463(+)$1	265	14	40	13.0388
fa[gggggggnnnnnggggggg]a]f	chr1:47133814-47134082(-)$1	268	164	190	13.8028
iiiiii[cccnnnnnccciiiiiiii	chr22:50015535-50015894(-)$1	359	260	286	14.1624
c[dddd!!bbnnnnnbb22ddddccc	chr22:50041312-50041586(-)$1	274	111	137	11.9551
ca[gggggggnnnnnggggggg]a]c	chr4:110650915-110651259(-)$1	344	103	129	14.1991
cccddddcccnnnnnccc]dddd]cc	chr16:15732966-15733249(-)$1	283	126	152	12.7744
$$$gggggggnnnnnggggggg22ff	chr5:176074553-176074803(+)$1	250	205	231	12.7920
c!!gggggggooooooggggggg22c	chr7:101563030-101563294(+)$1	264	19	45	9.3061
ggg!!bb[bbnnnnnbb]bb4444gg	chr6:31704106-31704382(-)$1	276	158	184	12.2922
c[bb[eeeeennnnneeeee22bbcc	chr22:37627102-37627351(-)$1	249	63	89	11.3701
bb[gggggggnnnnngggggggbb]d	chr3:142838691-142838992(+)$1	301	139	165	12.9765
$$ccc[ddddnnnnndddd]cccfff	chr19:2269689-2269917(+)$1	228	87	113	11.7178
####ccc!!annnnna22ccc4444d	chr21:38748279-38748537(+)$1	258	57	83	13.5186
dd[eeeee[annnnna]eeeee]ddd	chr15:55681462-55681732(-)$1	270	95	121	12.3965
cc"""cccbbnnnnnbb]ccccccff	chr9:115983798-115984060(+)$1	262	38	64	13.0109
=======cccnnnnnccc:ggggggg	chr17:76117870-76118119(-)$1	249	159	185	13.2551
hhhhhha[bbnnnnnbb]a]hhhhhh	chr1:1219607-1219904(+)$1	297	181	207	11.2173
b"""ffffffnnnnnffffff333bb	chr19:4065997-4066259(-)$1	262	38	64	12.6240
hh[ddddcccnnnnnccc]dddd]hh	chr12:120903473-120903691(-)$1	218	98	124	12.3033
ddd[a[a[bbnnnnnbb22a]a]ddd	chr1:110527363-110527637(+)$1	274	173	199	12.5044
ddd[ffffffnnnnnffffff]dddd	chr8:142428684-142428954(+)$1	270	149	175	11.9192
bb[eeeee[annnnna]eeeee333b	chrX:149108406-149108656(+)$1	250	171	197	12.6196
ccc[ffffffnnnnnffffff]ccc]	chr3:176887876-176888151(-)$1	275	54	80	12.6107
ee!!ccccccnnnnnccc]ccc333e	chr22:21801904-21802153(+)$1	249	51	77	13.9622
c!!bb[a[bbnnnnnbba]bb22ccc	chr20:62331063-62331291(-)$1	228	128	154	12.5819
ee[a[ccc!!annnnna22ccc]a]e	chr3:195635566-195635828(-)$1	262	133	159	11.3501
cccddddcccnnnnnccc>>>>>>>>	chr21:46841100-46841342(+)$1	242	164	190	11.3907
!!a[a!!cccnnnnnccc22a]a22b	chr14:100705155-100705451(+)$1	296	172	198	13.6238
[ffffffcccnnnnnccc]ffffff3	chr22:37626757-37627024(-)$1	267	64	90	12.3306
c"""dddd[annnnnadddd333ccc	chr22:20111819-20112048(+)$1	229	2	28	13.3634
cc[gggggggnnnnngggggggcccf	chr2:10540061-10540340(+)$1	279	187	213	13.7096
d[ccc!!cccnnnnnccc]ccc]ddd	chr9:138839403-138839657(-)$1	254	125	151	13.6673
gg!!ccc!!annnnna22ccc]gggg	chr7:140402564-140402846(+)$1	282	33	59	13.5354
b####eeeeennnnneeeee]bb]bb	chr18:44702510-44702731(-)$1	221	147	173	11.5166
=====!!cccnnnnnccc========	chr22:50037484-50037762(-)$1	278	5	31	14.6566
!bb[ffffffnnnnnffffff]bb]b	chr19:55607781-55608078(-)$1	297	3	29	11.7935
==========nnnnn===========	chr17:76119033-76119332(-)$1	299	53	79	14.6167
####ffffffnnnnnfffffffffff	chr21:46845079-46845352(+)$1	273	211	237	12.0329
==========nnnnn==========:	chr18:77748342-77748627(-)$1	285	105	131	13.7584
dddccc[cccnnnnncccccc]dddd	chr3:122807914-122808175(+)$1	261	132	158	12.8883
ccc[a[a[bbnnnnnbb]a]a]ccc:	chr12:132403431-132403766(+)$1	335	66	92	12.7473
hhhhhh[cccnnnnnccc]hhhhhhh	chr7:150028704-150029008(+)$1	304	123	149	11.7542
cccbbeeeeennnnneeeee]bb]cc	chr3:41241024-41241262(+)$1	238	183	209	11.4317
ggggg[ccc[allla]ccc]gggggg	chr12:123997713-123997999(-)$1	286	168	194	9.4276
ccc!!bbcccnnnnnccc]bb>>>>>	chr11:118926377-118926598(-)$1	221	100	126	12.0390

#otherMatches

#Seq PSSM
GGGGAAUUGUAUUAAACAGAUCACCC	chr9:94601999-94602363(-)$1	364	213	239	10.9852
AGUCAGGGCCCAGAUGGCUCCUGAGU	chr17:76118829-76119106(-)$1	277	148	174	12.6712
GCUCCGCGUUCCCACAAUGCAGUGCG	chr12:120907161-120907575(-)$1	414	36	62	12.2543
AACUUUUAGGGAUUAUUUAGGAGUUU	chr6:10747948-10748214(+)$1	266	214	240	14.5627
GGCUUCCCGGGAUGUCUGGGAAGUGU	chr9:139249205-139249520(+)$1	315	133	159	13.9883
UGCUCAUGGUGAUGGACUGUUGGGGA	chr2:97560691-97560982(-)$1	291	177	203	11.6737
GGUCUCUGAGGGAGGCGGAGGGACAC	chr7:158459765-158460126(-)$1	361	147	173	11.9623
GCACCGGGAGGAAAGUUUCGGAGUGC	chr4:80994086-80994359(-)$1	273	104	130	11.7377
ACCAUGCCCGGUGCUCGUGAGGAUGG	chr17:79281016-79281285(-)$1	269	188	214	12.3106
UGCUCAUGGUGAUGGACUGUUGGGGA	chr2:97560635-97560891(-)$1	256	86	112	11.6737
ggcgaggagcgccggguaccgggccg	chr3:185542662-185542933(-)$1	271	128	154	11.4871
AUGUCUCACGCGUGGGGUGGGGCAUU	chr16:88827965-88828255(-)$1	290	157	183	10.2965
GGgggcggaggggagcgcugccgcgg	chr11:64073198-64073463(+)$1	265	14	40	13.0388
UGUGCGCGGUGCGCAGCCGCGCCCUG	chr1:47133814-47134082(-)$1	268	164	190	13.8028
GGCCUGGCUGUGGCCCAGCAGGUCUG	chr22:50015535-50015894(-)$1	359	260	286	14.1624
GCAAGGUAUGUUUCUCAGCCCUUUUU	chr22:50041312-50041586(-)$1	274	111	137	11.9551
GGCGCUGCCUGCCCGAGGCGGUUCAC	chr4:110650915-110651259(-)$1	344	103	129	14.1991
AUGAAAGGAUGUUGAAUCACUUUGCA	chr16:15732966-15733249(-)$1	283	126	152	12.7744
UCAGUCUUUUGCUGGGGGAGACCACU	chr5:176074553-176074803(+)$1	250	205	231	12.7920
CCCUUCCCAGAUGUCACUGGGAAAAG	chr7:101563030-101563294(+)$1	264	19	45	9.3061
CAAGUAGGUCUGAUUGAGCUUGUGUU	chr6:31704106-31704382(-)$1	276	158	184	12.2922
CACUGGCCAAGGAGAUUGGUAUGGGC	chr22:37627102-37627351(-)$1	249	63	89	11.3701
GGUCCUUUGGUCCAGUCGGAGGCUGC	chr3:142838691-142838992(+)$1	301	139	165	12.9765
AGCGCCGGCCGCGCAGGCCUGCGGGG	chr19:2269689-2269917(+)$1	228	87	113	11.7178
auggcuuggcagagagaagagagagu	chr21:38748279-38748537(+)$1	258	57	83	13.5186
UUGUAGACCUGAAAGAUGUCUGAAAA	chr15:55681462-55681732(-)$1	270	95	121	12.3965
CGGUGGCGGUGGUGGACACGUCGAGC	chr9:115983798-115984060(+)$1	262	38	64	13.0109
AGGGCCCUCAGCAGAUGAAAGGGCAG	chr17:76117870-76118119(-)$1	249	159	185	13.2551
CCAUCAGGAACAGGAUUGCAUGGUGG	chr1:1219607-1219904(+)$1	297	181	207	11.2173
UGAGCUCCAUGGGGGAUGGGGGGGAG	chr19:4065997-4066259(-)$1	262	38	64	12.6240
UAGAGAUGCAGAGGAUGCUAUUUAUG	chr12:120903473-120903691(-)$1	218	98	124	12.3033
CCGACGCAGCUCGACGCAGgggccgg	chr1:110527363-110527637(+)$1	274	173	199	12.5044
UGgaggcaggggcaaccuguccccau	chr8:142428684-142428954(+)$1	270	149	175	11.9192
GCGUAGUUGUGGGAAAGAGCUGUGGG	chrX:149108406-149108656(+)$1	250	171	197	12.6196
UAAGUGUUUUUGUGUGGGACGGUUGG	chr3:176887876-176888151(-)$1	275	54	80	12.6107
GUGUAACGUUUAUGUGACUGUUUGAA	chr22:21801904-21802153(+)$1	249	51	77	13.9622
UGACUGAUGCAAAAAGCUGAGGGGGC	chr20:62331063-62331291(-)$1	228	128	154	12.5819
CGGGGUGCAGGAGGGACAGGUGGUGC	chr3:195635566-195635828(-)$1	262	133	159	11.3501
CAGGCCUCAGGAGAGCUGGGAAGGGA	chr21:46841100-46841342(+)$1	242	164	190	11.3907
gaggcgaggcggggagccgagacgag	chr14:100705155-100705451(+)$1	296	172	198	13.6238
CUAGUAGUAUGAGUAGUAUCUAUUAA	chr22:37626757-37627024(-)$1	267	64	90	12.3306
UGGGCCCUUGGUAGACAGGGAAAGUG	chr22:20111819-20112048(+)$1	229	2	28	13.3634
gcgugcuucuagcuaaggagcagcug	chr2:10540061-10540340(+)$1	279	187	213	13.7096
ggggaagccggugagcgggucuguag	chr9:138839403-138839657(-)$1	254	125	151	13.6673
AGGAGUUUUGGAUGACUUAACGCUUU	chr7:140402564-140402846(+)$1	282	33	59	13.5354
UGCACGAGGAGCGAUUCCUCAAGAAC	chr18:44702510-44702731(-)$1	221	147	173	11.5166
AGGGUGAGCAGGGGAUGCACUUUGGC	chr22:50037484-50037762(-)$1	278	5	31	14.6566
AGUGCCGGCUGCAGGAGCCGGGGCAG	chr19:55607781-55608078(-)$1	297	3	29	11.7935
ccccaguguuaugggagcacugggga	chr17:76119033-76119332(-)$1	299	53	79	14.6167
UGGUGCUGACACAGAGUCAGCGGGUC	chr21:46845079-46845352(+)$1	273	211	237	12.0329
GCGGGCGGGACCGGAUUUCGUCCGUg	chr18:77748342-77748627(-)$1	285	105	131	13.7584
GGUCUCCUCGCUCAUUGAGAGAAUCU	chr3:122807914-122808175(+)$1	261	132	158	12.8883
gcaggguguggggugcagggugugug	chr12:132403431-132403766(+)$1	335	66	92	12.7473
GCAUGUGCUGGCAGGUGGGAUAUGUC	chr7:150028704-150029008(+)$1	304	123	149	11.7542
CCUCUCGGAGCCAAACUUCGUAGCAG	chr3:41241024-41241262(+)$1	238	183	209	11.4317
GAGUUUGUGGCUUUGGCACUGACUUC	chr12:123997713-123997999(-)$1	286	168	194	9.4276
UCAAACCUGGAGUGCCCAUGGAAAUU	chr11:118926377-118926598(-)$1	221	100	126	12.0390

#DB
(((((.((((.....)))).)).)))	chr9:94601999-94602363(-)$1	1	213	239	10.9852
(.((((((((.....))).))))).)	chr17:76118829-76119106(-)$1	1	148	174	12.6712
((.(.(((((.....))))).).)))	chr12:120907161-120907575(-)$1	1	36	62	12.2543
((((((((((.....)))))))))).	chr6:10747948-10748214(+)$1	1	214	240	14.5627
.(((((((((.....))))))))).)	chr9:139249205-139249520(+)$1	1	133	159	13.9883
(.((((((((.....)))).)))).)	chr2:97560691-97560982(-)$1	1	177	203	11.6737
(((((((..(.....)..)))))).)	chr7:158459765-158460126(-)$1	1	147	173	11.9623
(((((.((((.....)))).).))))	chr4:80994086-80994359(-)$1	1	104	130	11.7377
.((((.((((.....)).).).))))	chr17:79281016-79281285(-)$1	1	188	214	12.3106
(.((((((((.....)))).)))).)	chr2:97560635-97560891(-)$1	1	86	112	11.6737
(((..((.((.....)).))..))).	chr3:185542662-185542933(-)$1	1	128	154	11.4871
(((((((((.(...).))))))))))	chr16:88827965-88828255(-)$1	1	157	183	10.2965
.(.(((((.(.....).))))).).)	chr11:64073198-64073463(+)$1	1	14	40	13.0388
((.(((((((.....))))))).).)	chr1:47133814-47134082(-)$1	1	164	190	13.8028
((((((.(((.....)))))))))))	chr22:50015535-50015894(-)$1	1	260	286	14.1624
(.((((..((.....))..)))))))	chr22:50041312-50041586(-)$1	1	111	137	11.9551
((.(((((((.....))))))).).)	chr4:110650915-110651259(-)$1	1	103	129	14.1991
((((((((((.....))).)))).))	chr16:15732966-15733249(-)$1	1	126	152	12.7744
...(((((((.....)))))))..))	chr5:176074553-176074803(+)$1	1	205	231	12.7920
(..(((((((......)))))))..)	chr7:101563030-101563294(+)$1	1	19	45	9.3061
(((..((.((.....)).))....))	chr6:31704106-31704382(-)$1	1	158	184	12.2922
(.((.(((((.....)))))..))))	chr22:37627102-37627351(-)$1	1	63	89	11.3701
((.(((((((.....))))))))).)	chr3:142838691-142838992(+)$1	1	139	165	12.9765
..(((.((((.....)))).))))))	chr19:2269689-2269917(+)$1	1	87	113	11.7178
....(((..(.....)..)))....)	chr21:38748279-38748537(+)$1	1	57	83	13.5186
((.(((((.(.....).))))).)))	chr15:55681462-55681732(-)$1	1	95	121	12.3965
((...(((((.....)).))))))))	chr9:115983798-115984060(+)$1	1	38	64	13.0109
)))))))(((.....))).(((((((	chr17:76117870-76118119(-)$1	1	159	185	13.2551
(((((((.((.....)).).))))))	chr1:1219607-1219904(+)$1	1	181	207	11.2173
(...((((((.....))))))...))	chr19:4065997-4066259(-)$1	1	38	64	12.6240
((.(((((((.....))).)))).))	chr12:120903473-120903691(-)$1	1	98	124	12.3033
(((.(.(.((.....))..).).)))	chr1:110527363-110527637(+)$1	1	173	199	12.5044
(((.((((((.....)))))).))))	chr8:142428684-142428954(+)$1	1	149	175	11.9192
((.(((((.(.....).)))))...)	chrX:149108406-149108656(+)$1	1	171	197	12.6196
(((.((((((.....)))))).))).	chr3:176887876-176888151(-)$1	1	54	80	12.6107
((..((((((.....))).)))...)	chr22:21801904-21802153(+)$1	1	51	77	13.9622
(..((.(.((.....))).))..)))	chr20:62331063-62331291(-)$1	1	128	154	12.5819
((.(.(((..(.....)..))).).)	chr3:195635566-195635828(-)$1	1	133	159	11.3501
((((((((((.....)))........	chr21:46841100-46841342(+)$1	1	164	190	11.3907
..(.(..(((.....)))..).)..)	chr14:100705155-100705451(+)$1	1	172	198	13.6238
.(((((((((.....))).)))))).	chr22:37626757-37627024(-)$1	1	64	90	12.3306
(...((((.(.....)))))...)))	chr22:20111819-20112048(+)$1	1	2	28	13.3634
((.(((((((.....))))))))))(	chr2:10540061-10540340(+)$1	1	187	213	13.7096
(.(((..(((.....))).))).)))	chr9:138839403-138839657(-)$1	1	125	151	13.6673
((..(((..(.....)..))).))))	chr7:140402564-140402846(+)$1	1	33	59	13.5354
(....(((((.....))))).)).))	chr18:44702510-44702731(-)$1	1	147	173	11.5166
(((((..(((.....)))))))))))	chr22:50037484-50037762(-)$1	1	5	31	14.6566
.((.((((((.....)))))).)).)	chr19:55607781-55608078(-)$1	1	3	29	11.7935
((((((((((.....)))))))))))	chr17:76119033-76119332(-)$1	1	53	79	14.6167
....((((((.....)))))))))))	chr21:46845079-46845352(+)$1	1	211	237	12.0329
((((((((((.....)))))))))).	chr18:77748342-77748627(-)$1	1	105	131	13.7584
((((((.(((.....)))))).))))	chr3:122807914-122808175(+)$1	1	132	158	12.8883
(((.(.(.((.....)).).).))).	chr12:132403431-132403766(+)$1	1	66	92	12.7473
((((((.(((.....))).)))))))	chr7:150028704-150029008(+)$1	1	123	149	11.7542
((((((((((.....))))).)).))	chr3:41241024-41241262(+)$1	1	183	209	11.4317
(((((.(((.(...).))).))))))	chr12:123997713-123997999(-)$1	1	168	194	9.4276
(((..(((((.....))).)).....	chr11:118926377-118926598(-)$1	1	100	126	12.0390

#PSSM
c : 0.26	d : 0.14	= : 0.10	b : 0.08	[ : 0.05	a : 0.05	# : 0.05	g : 0.05	h : 0.05	$ : 0.03	e : 0.03	! : 0.03	f : 0.01	i : 0.01	
c : 0.15	d : 0.14	[ : 0.10	= : 0.10	a : 0.05	! : 0.05	g : 0.05	b : 0.05	# : 0.05	h : 0.05	i : 0.03	f : 0.03	$ : 0.03	" : 0.03	e : 0.03	
[ : 0.17	d : 0.15	c : 0.15	= : 0.10	! : 0.07	# : 0.05	" : 0.05	i : 0.03	f : 0.03	g : 0.03	b : 0.03	h : 0.03	e : 0.01	$ : 0.01	a : 0.01	
d : 0.14	g : 0.12	= : 0.10	[ : 0.10	! : 0.08	b : 0.07	e : 0.07	c : 0.05	# : 0.05	" : 0.05	a : 0.03	i : 0.03	f : 0.03	h : 0.03	
d : 0.14	f : 0.12	g : 0.12	= : 0.10	c : 0.10	e : 0.07	a : 0.07	b : 0.05	[ : 0.05	! : 0.05	i : 0.03	h : 0.03	" : 0.01	# : 0.01	
[ : 0.14	e : 0.14	d : 0.12	f : 0.12	g : 0.10	c : 0.10	= : 0.08	b : 0.05	! : 0.05	i : 0.03	h : 0.03	
d : 0.15	e : 0.14	f : 0.12	g : 0.10	c : 0.10	= : 0.08	a : 0.08	! : 0.07	b : 0.05	[ : 0.05	i : 0.01	
c : 0.29	e : 0.12	d : 0.10	[ : 0.10	g : 0.10	f : 0.08	= : 0.07	! : 0.07	i : 0.01	a : 0.01	
c : 0.26	b : 0.15	g : 0.10	d : 0.08	f : 0.08	e : 0.07	= : 0.07	! : 0.07	[ : 0.07	i : 0.01	
c : 0.24	b : 0.15	a : 0.12	g : 0.10	d : 0.08	f : 0.08	e : 0.07	= : 0.05	[ : 0.03	i : 0.01	! : 0.01	
n : 0.92	a : 0.05	o : 0.01	
n : 0.94	l : 0.03	o : 0.01	
n : 0.94	l : 0.03	o : 0.01	
n : 0.94	l : 0.03	o : 0.01	
n : 0.94	a : 0.03	o : 0.01	
c : 0.24	b : 0.15	a : 0.12	d : 0.08	g : 0.08	f : 0.08	e : 0.07	= : 0.05	] : 0.03	i : 0.01	o : 0.01	n : 0.01	
c : 0.26	b : 0.15	d : 0.10	g : 0.10	f : 0.08	e : 0.07	= : 0.07	2 : 0.05	] : 0.05	i : 0.01	a : 0.01	
c : 0.26	e : 0.12	d : 0.10	2 : 0.10	] : 0.10	g : 0.10	f : 0.08	= : 0.07	i : 0.01	a : 0.01	
] : 0.15	e : 0.12	d : 0.10	f : 0.10	g : 0.10	= : 0.08	c : 0.08	2 : 0.07	a : 0.05	i : 0.03	b : 0.03	: : 0.01	> : 0.01	
] : 0.15	e : 0.14	f : 0.12	g : 0.12	c : 0.12	= : 0.08	b : 0.07	d : 0.07	i : 0.03	a : 0.01	> : 0.01	2 : 0.01	h : 0.01	
g : 0.14	c : 0.14	f : 0.12	= : 0.08	d : 0.08	e : 0.07	] : 0.07	a : 0.07	b : 0.05	i : 0.03	2 : 0.03	h : 0.03	4 : 0.01	> : 0.01	3 : 0.01	
] : 0.15	g : 0.14	= : 0.08	d : 0.08	c : 0.08	e : 0.07	b : 0.05	f : 0.05	2 : 0.05	a : 0.03	i : 0.03	4 : 0.03	h : 0.03	3 : 0.03	> : 0.03	
] : 0.15	d : 0.15	c : 0.10	= : 0.08	b : 0.08	g : 0.07	3 : 0.07	f : 0.05	i : 0.03	2 : 0.03	4 : 0.03	h : 0.03	> : 0.03	e : 0.01	a : 0.01	
d : 0.19	c : 0.14	= : 0.08	f : 0.07	a : 0.07	] : 0.07	2 : 0.05	b : 0.05	g : 0.05	3 : 0.05	i : 0.03	4 : 0.03	h : 0.03	> : 0.03	e : 0.01	
] : 0.19	c : 0.17	d : 0.15	= : 0.08	f : 0.08	g : 0.07	h : 0.05	2 : 0.03	b : 0.03	3 : 0.03	> : 0.03	i : 0.01	4 : 0.01	
d : 0.21	c : 0.14	b : 0.12	f : 0.10	g : 0.07	a : 0.05	= : 0.05	h : 0.05	e : 0.03	> : 0.03	: : 0.03	4 : 0.01	7 : 0.01	i : 0.01	] : 0.01	3 : 0.01	

#score	712.1506214935813
#seq	57
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_UTR_m1_run2.txt

#BEAR
ddd[bb[gggggggmmmmggggggg]bb]dddd]gg	chr22:20073330-20073574(+)$1	244	55	91	10.9079
fff[bb[ccc[cccooooooccc]ccc]bbffffff	chr1:151024195-151024437(-)$1	242	124	160	11.6257
eee[dddd"""cccnnnnnccc333ddddeeeeegg	chr17:48828947-48829247(+)$1	300	251	287	13.9856
ceeeee[a[eeeeemmmmeeeee]a]eeeee22ccc	chr19:54971360-54971586(+)$1	226	59	95	12.2424
dddd####ffffffnnnnnffffff4444dddd22a	chr1:161088100-161088509(+)$1	409	150	186	14.0485
[bb[eeeeeeeeeemmmmeeeee]eeeee]bb]ggg	chr6:64290056-64290356(+)$1	300	79	115	11.4408
===!!ccc####ddddllldddd4444ccc22====	chr17:30800933-30801222(+)$1	289	123	159	11.3473
eeeee"""ffffffmmmmffffff4444eeeeefff	chr10:103545082-103545357(-)$1	275	157	193	12.7779
iiiiiiiiia[cccnnnnnccc]a]iiiiiiiii]a	chr21:35476760-35477070(+)$1	310	160	196	13.9894
cbb"""ddddddddnnnnndddd]ddddbb]ccc]c	chr11:10828898-10829159(-)$1	261	96	132	12.0893
[bb[dddd[eeeeennnnneeeee]dddd]bb]ccc	chr17:30701866-30702120(+)$1	254	55	91	13.7439
c[dddd[ffffffooooooffffff22dddd]ccc:	chr1:36393154-36393467(+)$1	313	187	223	11.6554
[gggggggffffffnnnnnffffff333ggggggg]	chr20:34312412-34312680(-)$1	268	187	223	14.7078

#otherMatches

#Seq PSSM
ACGCGCCCGGGUCUCAGCGGACUUGUGCAUGUUAGC	chr22:20073330-20073574(+)$1	244	55	91	10.9079
GAGAGAGAAGCAGUAGAUACACUCCUUAUCCUCCCC	chr1:151024195-151024437(-)$1	242	124	160	11.6257
GAAAUAUUAAAAGUUAGGUACUGUAAGUGUUCUUAA	chr17:48828947-48829247(+)$1	300	251	287	13.9856
UCUGAGGACCUGGCUCGUGCUAGAUGCUCAGUCAGU	chr19:54971360-54971586(+)$1	226	59	95	12.2424
GGAGAGAGUCUUGGGAAAACCAAGGAUAGUUCCCGG	chr1:161088100-161088509(+)$1	409	150	186	14.0485
UACAUAUUAGCCAACAUGUUGGCUUAGUAAGUCUAA	chr6:64290056-64290356(+)$1	300	79	115	11.4408
GUUACAGAAACAGCAGCAGCUGCGGCCUCUAGGGCU	chr17:30800933-30801222(+)$1	289	123	159	11.3473
AGGGUUCAGGGACUGAUUGGUCCCAUUUGCCCUCAG	chr10:103545082-103545357(-)$1	275	157	193	12.7779
UUAUUCUUGCCAGCAAAAAGCUAGCCAGGAAUGAGC	chr21:35476760-35477070(+)$1	310	160	196	13.9894
GAGUACAUUUUAGGUUAGUCUUACAGAUCUGCAAUG	chr11:10828898-10829159(-)$1	261	96	132	12.0893
GUUUCCAACUAAAAUUUGCUUUUAUUUGGUGAGAAA	chr17:30701866-30702120(+)$1	254	55	91	13.7439
UGGUCUCAAAGGUACUUCAACuuuuacagaugagaa	chr1:36393154-36393467(+)$1	313	187	223	11.6554
AGGUAAUUUUUUUGUUGGUUAAGAGUUUGAUUAUUG	chr20:34312412-34312680(-)$1	268	187	223	14.7078

#DB
(((.((.(((((((....))))))).)).)))).))	chr22:20073330-20073574(+)$1	1	55	91	10.9079
(((.((.(((.(((......))).))).))))))))	chr1:151024195-151024437(-)$1	1	124	160	11.6257
(((.((((...(((.....)))...)))))))))))	chr17:48828947-48829247(+)$1	1	251	287	13.9856
((((((.(.(((((....))))).).)))))..)))	chr19:54971360-54971586(+)$1	1	59	95	12.2424
((((....((((((.....))))))....))))..)	chr1:161088100-161088509(+)$1	1	150	186	14.0485
.((.((((((((((....))))).))))).)).)))	chr6:64290056-64290356(+)$1	1	79	115	11.4408
(((..(((....((((...))))....)))..))))	chr17:30800933-30801222(+)$1	1	123	159	11.3473
(((((...((((((....))))))....)))))(((	chr10:103545082-103545357(-)$1	1	157	193	12.7779
((((((((((.(((.....))).).))))))))).)	chr21:35476760-35477070(+)$1	1	160	196	13.9894
(((...((((((((.....)))).)))))).))).)	chr11:10828898-10829159(-)$1	1	96	132	12.0893
.((.((((.(((((.....))))).)))).)).)))	chr17:30701866-30702120(+)$1	1	55	91	13.7439
(.((((.((((((......))))))..)))).))).	chr1:36393154-36393467(+)$1	1	187	223	11.6554
.(((((((((((((.....))))))...))))))).	chr20:34312412-34312680(-)$1	1	187	223	14.7078

#PSSM
c : 0.23	[ : 0.23	d : 0.15	e : 0.15	f : 0.07	= : 0.07	i : 0.07	
e : 0.23	b : 0.23	d : 0.15	f : 0.07	= : 0.07	i : 0.07	[ : 0.07	g : 0.07	
d : 0.23	e : 0.23	b : 0.23	f : 0.07	= : 0.07	i : 0.07	g : 0.07	
[ : 0.38	e : 0.15	d : 0.15	! : 0.07	i : 0.07	" : 0.07	g : 0.07	
d : 0.23	e : 0.23	b : 0.15	# : 0.07	! : 0.07	i : 0.07	" : 0.07	g : 0.07	
d : 0.23	b : 0.15	e : 0.15	" : 0.15	# : 0.07	c : 0.07	i : 0.07	g : 0.07	
[ : 0.30	d : 0.23	# : 0.07	e : 0.07	c : 0.07	" : 0.07	i : 0.07	g : 0.07	
d : 0.23	g : 0.15	c : 0.15	a : 0.07	# : 0.07	e : 0.07	" : 0.07	i : 0.07	f : 0.07	
f : 0.30	[ : 0.15	g : 0.07	c : 0.07	" : 0.07	e : 0.07	# : 0.07	i : 0.07	d : 0.07	
f : 0.30	e : 0.23	g : 0.07	c : 0.07	" : 0.07	# : 0.07	a : 0.07	d : 0.07	
f : 0.30	e : 0.23	[ : 0.15	g : 0.07	" : 0.07	# : 0.07	d : 0.07	
f : 0.30	c : 0.23	e : 0.23	g : 0.07	# : 0.07	d : 0.07	
f : 0.30	c : 0.23	e : 0.23	d : 0.15	g : 0.07	
c : 0.23	e : 0.23	f : 0.23	d : 0.15	g : 0.07	o : 0.07	
n : 0.46	m : 0.30	o : 0.15	d : 0.07	
n : 0.46	m : 0.30	o : 0.15	d : 0.07	
n : 0.46	m : 0.30	o : 0.15	l : 0.07	
n : 0.46	m : 0.30	o : 0.15	l : 0.07	
n : 0.46	o : 0.15	e : 0.15	g : 0.07	l : 0.07	f : 0.07	
f : 0.30	e : 0.23	c : 0.15	d : 0.15	g : 0.07	o : 0.07	
f : 0.30	c : 0.23	e : 0.23	d : 0.15	g : 0.07	
f : 0.30	c : 0.23	e : 0.23	d : 0.15	g : 0.07	
f : 0.30	e : 0.23	d : 0.15	g : 0.07	c : 0.07	3 : 0.07	] : 0.07	
] : 0.30	f : 0.30	g : 0.07	3 : 0.07	4 : 0.07	a : 0.07	e : 0.07	
f : 0.23	4 : 0.15	] : 0.15	g : 0.07	c : 0.07	3 : 0.07	a : 0.07	e : 0.07	d : 0.07	
d : 0.23	4 : 0.23	] : 0.15	c : 0.07	e : 0.07	i : 0.07	2 : 0.07	3 : 0.07	
d : 0.23	4 : 0.23	e : 0.15	b : 0.07	c : 0.07	i : 0.07	2 : 0.07	3 : 0.07	
d : 0.30	e : 0.15	4 : 0.15	b : 0.07	] : 0.07	c : 0.07	i : 0.07	3 : 0.07	
d : 0.23	e : 0.23	b : 0.15	] : 0.07	4 : 0.07	c : 0.07	i : 0.07	g : 0.07	
d : 0.23	e : 0.23	b : 0.15	] : 0.15	c : 0.07	i : 0.07	g : 0.07	
d : 0.23	e : 0.23	b : 0.15	f : 0.07	2 : 0.07	i : 0.07	] : 0.07	g : 0.07	
d : 0.15	e : 0.15	2 : 0.15	b : 0.15	f : 0.07	i : 0.07	c : 0.07	] : 0.07	g : 0.07	
d : 0.15	e : 0.15	] : 0.15	c : 0.15	f : 0.07	2 : 0.07	= : 0.07	i : 0.07	g : 0.07	
c : 0.30	f : 0.15	g : 0.15	] : 0.07	e : 0.07	2 : 0.07	= : 0.07	i : 0.07	
g : 0.30	c : 0.23	f : 0.15	] : 0.15	2 : 0.07	= : 0.07	
g : 0.23	c : 0.23	f : 0.15	a : 0.15	= : 0.07	: : 0.07	] : 0.07	

#score	164.5624771130462
#seq	13
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_UTR_m3_run1.txt

#BEAR
:eeeeeooooooeeeee	chr4:1386081-1386329(+)$1	248	158	175	7.3548
eee[cccmmmmccceee	chr16:23585162-23585419(+)$1	257	21	38	6.7029
""eeeeemmmmeeeee3	chr1:91966560-91966837(+)$1	277	52	69	11.8205
d[eeeeellleeeee]d	chr19:45911825-45912096(-)$1	271	25	42	9.0737
###ddddmmmmdddd44	chr2:85548015-85548248(-)$1	233	72	89	8.8122
###ddddmmmmddddcc	chr3:187897793-187898044(+)$1	251	186	203	8.3025
c[eeeeemmmmeeeee]	chr2:85547328-85547579(-)$1	251	124	141	11.2860
c[eeeeellleeeee]c	chr1:91967099-91967373(+)$1	274	202	219	9.3934
:eeeeeooooooeeeee	chr4:26323201-26323442(+)$1	241	90	107	7.3548
bbeeeeennnnneeeee	chr4:1386705-1386966(+)$1	261	16	33	7.5319
::eeeeemmmmeeeee:	chrX:40509290-40509632(-)$1	342	268	285	8.6592
bbeeeeemmmmeeeee2	chr6:146226214-146226479(-)$1	265	179	196	10.4643
eeeecccmmmmccc]ee	chr5:167979512-167979759(-)$1	247	201	218	6.6712
"""ddddmmmmdddd33	chr20:36146435-36146704(-)$1	269	76	93	8.9457
b!!eeeeellleeeee2	chr2:85547651-85547884(-)$1	233	131	148	9.3982
a[eeeeellleeeee]a	chr4:1386402-1386618(+)$1	216	108	125	9.6666
++eeeeeooooooeeee	chr14:76117658-76117919(-)$1	261	39	56	7.4346
d[eeeeellleeeee]d	chr2:10494207-10494479(+)$1	272	53	70	9.0737
a[eeeeemmmmeeeeea	chr22:20067965-20068231(+)$1	266	222	239	11.2963
c[eeeeemmmmeeeee]	chr12:66250522-66250790(+)$1	268	191	208	11.2860
!!eeeeemmmmeeeee2	chr1:91966342-91966582(+)$1	240	118	135	11.5043
""eeeeemmmmeeeee]	chr3:187898028-187898299(+)$1	271	149	166	11.6850
a!!ddddmmmmdddda]	chr6:3259138-3259404(+)$1	266	73	90	8.5775
::eeeeemmmmeeeee:	chr7:141464802-141465054(+)$1	252	160	177	8.6592
"""ddddmmmmdddd66	chr16:70192498-70192730(+)$1	232	43	60	7.8544
###ddddmmmmdddd44	chr2:85547919-85548195(-)$1	276	19	36	8.8122
c!!ddddmmmmddddcc	chr5:112228337-112228641(-)$1	304	138	155	8.1165
""eeeeennnnneeeee	chr11:57585398-57585684(+)$1	286	19	36	8.6973
b!!eeeeellleeeee2	chr2:85547684-85547939(-)$1	255	186	203	9.3982
cccddddmmmmdddd]c	chr16:23584998-23585248(+)$1	250	222	239	7.4272
b[eeeeennnnneeeee	chr20:34820053-34820322(+)$1	269	130	147	8.2683
c[eeeeemmmmeeeeec	chr19:45912459-45912728(-)$1	269	15	32	11.0231
::eeeeemmmmeeeeeb	chr12:66250402-66250655(+)$1	253	39	56	8.9975
###ddddmmmmddddcc	chr3:187897874-187898152(+)$1	278	105	122	8.3025
b[eeeeellleeeee44	chr12:49330657-49330887(-)$1	230	20	37	9.6716
ee[ddddmmmmdddd]e	chr21:44269595-44269873(-)$1	278	222	239	7.3529
fffeeeeellleeeeeG	chr2:74090641-74090925(+)$1	284	170	187	7.4059
!!eeeeemmmmeeeee2	chr20:36146708-36146972(-)$1	264	61	78	11.5043
!!eeeeemmmmeeeee7	chr6:52367689-52367951(-)$1	262	225	242	11.0838
h:eeeeemmmmeeeee:	chr2:75884294-75884602(+)$1	308	120	137	8.8888
""eeeeemmmmeeeeea	chr12:66250141-66250412(+)$1	271	57	74	11.5286
##eeeeellleeeee44	chr2:176791697-176791980(-)$1	283	255	272	10.0507
!!eeeeemmmmeeeee2	chr1:91966309-91966542(+)$1	233	151	168	11.5043
$$eeeeemmmmeeeeee	chr11:62566392-62566665(-)$1	273	180	197	10.9806
c[eeeeemmmmeeeee]	chr7:143003007-143003252(+)$1	245	51	68	11.2860
c[eeeeemmmmeeeee]	chr2:85547387-85547685(-)$1	298	230	247	11.2860

#otherMatches

#Seq PSSM
guaggacagaucuucua	chr4:1386081-1386329(+)$1	248	158	175	7.3548
GCCGUGCAAGGGCAGGC	chr16:23585162-23585419(+)$1	257	21	38	6.7029
CUUCGGAUCCCUCCGAC	chr1:91966560-91966837(+)$1	277	52	69	11.8205
GUGUCUUCUAGAGGCUC	chr19:45911825-45912096(-)$1	271	25	42	9.0737
ACCCAGAUUUUUCUGUU	chr2:85548015-85548248(-)$1	233	72	89	8.8122
UUCGGCUUCCCAGCUGG	chr3:187897793-187898044(+)$1	251	186	203	8.3025
UGUCCAGCUUCUUGGAA	chr2:85547328-85547579(-)$1	251	124	141	11.2860
AUGAGCCAAUGGCUUUU	chr1:91967099-91967373(+)$1	274	202	219	9.3934
UGUGGGUCCCCUCUCAC	chr4:26323201-26323442(+)$1	241	90	107	7.3548
acacacaguugaugugu	chr4:1386705-1386966(+)$1	261	16	33	7.5319
UCAAGGGUCAGCCCUUU	chrX:40509290-40509632(-)$1	342	268	285	8.6592
GCUCACCCUUAGGUGAC	chr6:146226214-146226479(-)$1	265	179	196	10.4643
CAAUAGCAGUGGCUGGU	chr5:167979512-167979759(-)$1	247	201	218	6.6712
UCUGGGCUCAAGCUUUC	chr20:36146435-36146704(-)$1	269	76	93	8.9457
AACCCAGUUCUGCUGGU	chr2:85547651-85547884(-)$1	233	131	148	9.3982
gcaguucuuugagcuuc	chr4:1386402-1386618(+)$1	216	108	125	9.6666
CCAGGACUUUCUCGUUU	chr14:76117658-76117919(-)$1	261	39	56	7.4346
auguaguucuacugcuu	chr2:10494207-10494479(+)$1	272	53	70	9.0737
CAUCGCCUUCAGGCGGG	chr22:20067965-20068231(+)$1	266	222	239	11.2963
ccuuauuuccaaauaaa	chr12:66250522-66250790(+)$1	268	191	208	11.2860
GACCCAGGCAUCUGGGG	chr1:91966342-91966582(+)$1	240	118	135	11.5043
UCUGUGUCUUAGCACAU	chr3:187898028-187898299(+)$1	271	149	166	11.6850
CGAGGACCCGGGUCUGG	chr6:3259138-3259404(+)$1	266	73	90	8.5775
UACAGGACUCUUCCUGA	chr7:141464802-141465054(+)$1	252	160	177	8.6592
AGCAAGUAUGUACUUAA	chr16:70192498-70192730(+)$1	232	43	60	7.8544
ACCCAGAUUUUUCUGUU	chr2:85547919-85548195(-)$1	276	19	36	8.8122
ACUAGGGUUUCUCCUUC	chr5:112228337-112228641(-)$1	304	138	155	8.1165
UCCCUUAUAUAUUGAGG	chr11:57585398-57585684(+)$1	286	19	36	8.6973
AACCCAGUUCUGCUGGU	chr2:85547684-85547939(-)$1	255	186	203	9.3982
GAGGGAGCCCUCUCCUC	chr16:23584998-23585248(+)$1	250	222	239	7.4272
CCUCUCCACCCAGgagg	chr20:34820053-34820322(+)$1	269	130	147	8.2683
GUGGGAGCCUCCUCCCC	chr19:45912459-45912728(-)$1	269	15	32	11.0231
cugacaucaugguguug	chr12:66250402-66250655(+)$1	253	39	56	8.9975
UUCGGCUUCCCAGCUGG	chr3:187897874-187898152(+)$1	278	105	122	8.3025
GUGCAGGUAUCUUGCUC	chr12:49330657-49330887(-)$1	230	20	37	9.6716
GCCCUUGUGCUCAGGAG	chr21:44269595-44269873(-)$1	278	222	239	7.3529
AGAGCAGCCUGGCUGUU	chr2:74090641-74090925(+)$1	284	170	187	7.4059
UUACUGACUCCUCAGUC	chr20:36146708-36146972(-)$1	264	61	78	11.5043
UUUCUGGAACGCCAGGC	chr6:52367689-52367951(-)$1	262	225	242	11.0838
UUGGGAGUCCCCUCCUC	chr2:75884294-75884602(+)$1	308	120	137	8.8888
uagcucugacaagagcc	chr12:66250141-66250412(+)$1	271	57	74	11.5286
ucucugaaucucagauc	chr2:176791697-176791980(-)$1	283	255	272	10.0507
GACCCAGGCAUCUGGGG	chr1:91966309-91966542(+)$1	233	151	168	11.5043
GUGCCAUCCCUGUGGUG	chr11:62566392-62566665(-)$1	273	180	197	10.9806
AAAAGCUUCCUAGCUUA	chr7:143003007-143003252(+)$1	245	51	68	11.2860
UGUCCAGCUUCUUGGAA	chr2:85547387-85547685(-)$1	298	230	247	11.2860

#DB
.(((((......)))))	chr4:1386081-1386329(+)$1	1	158	175	7.3548
(((.(((....))))))	chr16:23585162-23585419(+)$1	1	21	38	6.7029
..(((((....))))).	chr1:91966560-91966837(+)$1	1	52	69	11.8205
(.(((((...))))).)	chr19:45911825-45912096(-)$1	1	25	42	9.0737
...((((....))))..	chr2:85548015-85548248(-)$1	1	72	89	8.8122
...((((....))))))	chr3:187897793-187898044(+)$1	1	186	203	8.3025
(.(((((....))))).	chr2:85547328-85547579(-)$1	1	124	141	11.2860
(.(((((...))))).)	chr1:91967099-91967373(+)$1	1	202	219	9.3934
.(((((......)))))	chr4:26323201-26323442(+)$1	1	90	107	7.3548
(((((((.....)))))	chr4:1386705-1386966(+)$1	1	16	33	7.5319
..(((((....))))).	chrX:40509290-40509632(-)$1	1	268	285	8.6592
(((((((....))))).	chr6:146226214-146226479(-)$1	1	179	196	10.4643
(((((((....))).))	chr5:167979512-167979759(-)$1	1	201	218	6.6712
...((((....))))..	chr20:36146435-36146704(-)$1	1	76	93	8.9457
(..(((((...))))).	chr2:85547651-85547884(-)$1	1	131	148	9.3982
(.(((((...))))).)	chr4:1386402-1386618(+)$1	1	108	125	9.6666
..(((((......))))	chr14:76117658-76117919(-)$1	1	39	56	7.4346
(.(((((...))))).)	chr2:10494207-10494479(+)$1	1	53	70	9.0737
(.(((((....))))))	chr22:20067965-20068231(+)$1	1	222	239	11.2963
(.(((((....))))).	chr12:66250522-66250790(+)$1	1	191	208	11.2860
..(((((....))))).	chr1:91966342-91966582(+)$1	1	118	135	11.5043
..(((((....))))).	chr3:187898028-187898299(+)$1	1	149	166	11.6850
(..((((....))))).	chr6:3259138-3259404(+)$1	1	73	90	8.5775
..(((((....))))).	chr7:141464802-141465054(+)$1	1	160	177	8.6592
...((((....))))..	chr16:70192498-70192730(+)$1	1	43	60	7.8544
...((((....))))..	chr2:85547919-85548195(-)$1	1	19	36	8.8122
(..((((....))))))	chr5:112228337-112228641(-)$1	1	138	155	8.1165
..(((((.....)))))	chr11:57585398-57585684(+)$1	1	19	36	8.6973
(..(((((...))))).	chr2:85547684-85547939(-)$1	1	186	203	9.3982
(((((((....)))).)	chr16:23584998-23585248(+)$1	1	222	239	7.4272
(.(((((.....)))))	chr20:34820053-34820322(+)$1	1	130	147	8.2683
(.(((((....))))))	chr19:45912459-45912728(-)$1	1	15	32	11.0231
..(((((....)))))(	chr12:66250402-66250655(+)$1	1	39	56	8.9975
...((((....))))))	chr3:187897874-187898152(+)$1	1	105	122	8.3025
(.(((((...)))))..	chr12:49330657-49330887(-)$1	1	20	37	9.6716
((.((((....)))).)	chr21:44269595-44269873(-)$1	1	222	239	7.3529
)))(((((...))))))	chr2:74090641-74090925(+)$1	1	170	187	7.4059
..(((((....))))).	chr20:36146708-36146972(-)$1	1	61	78	11.5043
..(((((....))))).	chr6:52367689-52367951(-)$1	1	225	242	11.0838
).(((((....))))).	chr2:75884294-75884602(+)$1	1	120	137	8.8888
..(((((....))))))	chr12:66250141-66250412(+)$1	1	57	74	11.5286
..(((((...)))))..	chr2:176791697-176791980(-)$1	1	255	272	10.0507
..(((((....))))).	chr1:91966309-91966542(+)$1	1	151	168	11.5043
..(((((....))))))	chr11:62566392-62566665(-)$1	1	180	197	10.9806
(.(((((....))))).	chr7:143003007-143003252(+)$1	1	51	68	11.2860
(.(((((....))))).	chr2:85547387-85547685(-)$1	1	230	247	11.2860

#PSSM
c : 0.17	" : 0.13	b : 0.13	: : 0.10	# : 0.10	! : 0.08	e : 0.06	a : 0.06	d : 0.04	+ : 0.02	f : 0.02	h : 0.02	$ : 0.02	
[ : 0.26	! : 0.17	" : 0.13	e : 0.10	# : 0.10	: : 0.08	b : 0.04	+ : 0.02	c : 0.02	f : 0.02	$ : 0.02	
e : 0.71	# : 0.08	! : 0.08	" : 0.04	c : 0.02	[ : 0.02	f : 0.02	
e : 0.76	d : 0.21	[ : 0.02	
e : 0.73	d : 0.21	c : 0.04	
e : 0.73	d : 0.21	c : 0.04	
e : 0.69	d : 0.21	o : 0.04	c : 0.04	
m : 0.67	l : 0.13	o : 0.06	n : 0.06	e : 0.06	
m : 0.67	l : 0.19	o : 0.06	n : 0.06	
m : 0.67	l : 0.19	o : 0.06	n : 0.06	
m : 0.67	e : 0.13	o : 0.06	n : 0.06	l : 0.06	
e : 0.60	d : 0.21	o : 0.06	n : 0.06	c : 0.04	
e : 0.71	d : 0.21	c : 0.04	o : 0.02	
e : 0.73	d : 0.21	c : 0.04	
e : 0.76	d : 0.21	] : 0.02	
e : 0.65	] : 0.13	4 : 0.08	c : 0.06	3 : 0.02	a : 0.02	6 : 0.02	
e : 0.21	c : 0.13	] : 0.13	2 : 0.13	4 : 0.08	: : 0.06	a : 0.06	3 : 0.04	d : 0.04	6 : 0.02	b : 0.02	G : 0.02	7 : 0.02	

#score	430.3972853202346
#seq	46
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_UTR_m3_run1.txt

#BEAR
eeeeeqqqqqqqqeeee	chr5:94884249-94884526(-)$1	277	124	141	13.9297
eeeeeqqqqqqqqeeee	chr4:119736145-119736422(-)$1	277	185	202	13.9297
=====qqqqqqqq====	chr17:2381022-2381290(-)$1	268	22	39	13.6274
eeeeeqqqqqqqqeeee	chr10:121339386-121339617(-)$1	231	77	94	13.9297
:ddddqqqqqqqqdddd	chr2:8823688-8823974(+)$1	286	112	129	13.4805
fffffqqqqqqqqffff	chr18:13759839-13760128(+)$1	289	67	84	12.3426
fffffqqqqqqqqffff	chr4:175238379-175238633(+)$1	254	83	100	12.3426
:ddddqqqqqqqqdddd	chr4:83275140-83275370(-)$1	230	132	149	13.4805
gggggqqqqqqqqgggg	chr18:77896930-77897225(+)$1	295	13	30	13.2117
Hddddqqqqqqqqdddd	chr18:43845192-43845461(+)$1	269	230	247	13.7336
[bb[aqqqqqqqqa]bb	chr7:91874970-91875278(-)$1	308	249	266	12.0449
=====qqqqqqqq====	chr5:32143824-32144095(-)$1	271	248	265	13.6274
e!!bbqqqqqqqqbb33	chr7:148524218-148524472(-)$1	254	67	84	13.0237
ffcccqqqqqqqqccc]	chr9:95015607-95015837(-)$1	230	136	153	13.2970
eeeeeqqqqqqqqeeee	chr1:71530667-71530931(-)$1	264	131	148	13.9297
d[cccqqqqqqqqcccd	chr6:32943958-32944184(+)$1	226	138	155	13.6018
:ddddqqqqqqqqdddd	chrX:154009477-154009731(-)$1	254	154	171	13.4805
ff[bbqqqqqqqqbb]f	chr10:75006440-75006699(-)$1	259	138	155	12.5736
eeeeeqqqqqqqqeeee	chr2:113410403-113410649(+)$1	246	7	24	13.9297
[ddddqqqqqqqqdddd	chr19:49699578-49699838(+)$1	260	219	236	14.4569
eeeeeqqqqqqqqeeee	chr12:124107162-124107425(-)$1	263	14	31	13.9297
cc[bbqqqqqqqqbbcc	chr14:35871106-35871377(-)$1	271	126	143	12.8741
gggggqqqqqqqqgggg	chr1:160188591-160188857(-)$1	266	235	252	13.2117
d[cccqqqqqqqqccc5	chr20:62572463-62572673(-)$1	210	64	81	12.6824
eddddqqqqqqqqdddd	chr17:26910502-26910779(-)$1	277	174	191	14.3471
:ddddqqqqqqqqdddd	chr3:38539013-38539278(+)$1	265	22	39	13.4805
#ddddqqqqqqqqdddd	chr3:43740880-43741151(+)$1	271	183	200	14.4412
eeeeeqqqqqqqqeeee	chrX:40982607-40982874(+)$1	267	69	86	13.9297
[ddddqqqqqqqqdddd	chr16:11862181-11862468(-)$1	287	55	72	14.4569
eeeeeqqqqqqqqeeee	chr17:57917026-57917269(+)$1	243	184	201	13.9297
b[cccqqqqqqqqccc]	chr2:171912926-171913185(-)$1	259	70	87	13.3473
"ddddqqqqqqqqdddd	chr6:31728886-31729096(+)$1	210	132	149	14.4596
!ddddqqqqqqqqdddd	chr17:62499057-62499348(-)$1	291	68	85	14.4928
==[bbqqqqqqqqbb]=	chr15:76576026-76576276(-)$1	250	208	225	13.0280
eeeeeqqqqqqqqeeee	chr4:6825799-6826051(+)$1	252	154	171	13.9297
###bbqqqqqqqqbb44	chr19:54972712-54972964(+)$1	252	150	167	12.8772
eeeeeqqqqqqqqeeee	chr3:107765969-107766250(-)$1	281	79	96	13.9297
ee[bbqqqqqqqqbbee	chr3:98235849-98236096(-)$1	247	137	154	13.2635
dd[bbqqqqqqqqbb]d	chrX:151128306-151128561(-)$1	255	195	212	13.0352
ddddaqqqqqqqqa]dd	chr15:91504143-91504398(+)$1	255	114	131	13.7242
#ddddqqqqqqqqdddd	chr2:176844445-176844715(-)$1	270	104	121	14.4412
[ddddqqqqqqqqdddd	chr17:40744030-40744295(-)$1	265	207	224	14.4569
eeeeeqqqqqqqqeeee	chr8:64081802-64082076(+)$1	274	20	37	13.9297
dddddqqqqqqqqdddd	chr8:101960996-101961231(-)$1	235	111	128	14.1846
eeeeeqqqqqqqqeeee	chrX:154001406-154001624(+)$1	218	179	196	13.9297
:ddddqqqqqqqqdddd	chr11:9599239-9599503(+)$1	264	126	143	13.4805
###bbqqqqqqqqbb33	chr1:16892151-16892411(-)$1	260	57	74	12.8236
''cccqqqqqqqqccc8	chr16:31202609-31202859(+)$1	250	54	71	12.0121
##cccqqqqqqqqccc5	chr6:31499063-31499304(-)$1	241	32	49	12.8347
cddddqqqqqqqqdddd	chr7:140482798-140483070(-)$1	272	159	176	14.2583
!!bbaqqqqqqqqa]bb	chr5:6605327-6605585(-)$1	258	109	126	12.4725
eeeeeqqqqqqqqeeee	chr4:56291430-56291697(+)$1	267	68	85	13.9297
:ddddqqqqqqqqdddd	chr12:57883875-57884125(+)$1	250	31	48	13.4805
bddddqqqqqqqqdddd	chr12:50399037-50399290(-)$1	253	183	200	14.0785
ccc[aqqqqqqqqaccc	chr17:56083200-56083439(-)$1	239	211	228	13.2477
ee[bbqqqqqqqqbb]e	chr14:31380875-31381165(-)$1	290	8	25	13.1378
eddddqqqqqqqqdddd	chr6:31696873-31697126(-)$1	253	209	226	14.3471
cddddqqqqqqqqdddd	chr2:175957184-175957444(-)$1	260	124	141	14.2583
eeeeeqqqqqqqqeeee	chr10:28884516-28884778(+)$1	262	145	162	13.9297
[ddddqqqqqqqqdddd	chr1:163295710-163295972(+)$1	262	68	85	14.4569
=====qqqqqqqq====	chr18:9931694-9931910(+)$1	216	26	43	13.6274
fffffqqqqqqqqffff	chr15:69714545-69714833(+)$1	288	227	244	12.3426
""cccqqqqqqqqccc4	chr3:141644261-141644490(+)$1	229	163	180	13.7070
!!cccqqqqqqqqccc]	chr16:277924-278201(-)$1	277	173	190	13.7983
"ddddqqqqqqqqdddd	chr10:28824364-28824589(+)$1	225	25	42	14.4596
gggggqqqqqqqqgggg	chr15:60646274-60646526(-)$1	252	69	86	13.2117
gg[bbqqqqqqqqbbgg	chr1:224437858-224438132(-)$1	274	27	44	12.9237
f!!bbqqqqqqqqbbff	chr1:1326774-1327064(-)$1	290	54	71	12.7303
#ddddqqqqqqqqdddd	chr2:175939662-175939927(-)$1	265	155	172	14.4412
=====qqqqqqqq====	chr12:122999151-122999421(-)$1	270	63	80	13.6274
eeeeeqqqqqqqqeeee	chr8:8865391-8865655(+)$1	264	215	232	13.9297
!!cccqqqqqqqqccc2	chr1:46125931-46126196(-)$1	265	220	237	13.5792
"ddddqqqqqqqqdddd	chr4:99955239-99955535(+)$1	296	225	242	14.4596
eeeeeqqqqqqqqeeee	chr12:67704695-67704962(+)$1	267	221	238	13.9297

#otherMatches

#Seq PSSM
AACCAAAGGAAACUGGU	chr5:94884249-94884526(-)$1	277	124	141	13.9297
GGCUGGUCCGCCACAGC	chr4:119736145-119736422(-)$1	277	185	202	13.9297
GGGUAUUUGGUUCUGCC	chr17:2381022-2381290(-)$1	268	22	39	13.6274
CUGUGCUUCUUUUCACA	chr10:121339386-121339617(-)$1	231	77	94	13.9297
CCACUCUUUCGCAGGUG	chr2:8823688-8823974(+)$1	286	112	129	13.4805
UGAGAAACUGAACUCUU	chr18:13759839-13760128(+)$1	289	67	84	12.3426
auauauuauuuauuaua	chr4:175238379-175238633(+)$1	254	83	100	12.3426
UCAAACUAAAUUUUUUG	chr4:83275140-83275370(-)$1	230	132	149	13.4805
GAAAUCUUUUGAUAUUU	chr18:77896930-77897225(+)$1	295	13	30	13.2117
ACCAGUCUCUUCUCUGG	chr18:43845192-43845461(+)$1	269	230	247	13.7336
ACGGCUUUCUUUUGGCG	chr7:91874970-91875278(-)$1	308	249	266	12.0449
GAGUGCUGAGUAACAUU	chr5:32143824-32144095(-)$1	271	248	265	13.6274
ACUUGUUUACUUCCAUU	chr7:148524218-148524472(-)$1	254	67	84	13.0237
CAAGUUUGUAGAUAUUC	chr9:95015607-95015837(-)$1	230	136	153	13.2970
GAUCAUCCCAUUCUGGU	chr1:71530667-71530931(-)$1	264	131	148	13.9297
UACUCCUCCACCUGAGA	chr6:32943958-32944184(+)$1	226	138	155	13.6018
UGUUCGGACAGCAGAAC	chrX:154009477-154009731(-)$1	254	154	171	13.4805
UCAGUGACAGAGAACAG	chr10:75006440-75006699(-)$1	259	138	155	12.5736
AAGUUGUUUACAAAACU	chr2:113410403-113410649(+)$1	246	7	24	13.9297
GCUGGUUCCACUUCUGG	chr19:49699578-49699838(+)$1	260	219	236	14.4569
augcuggaauacaggca	chr12:124107162-124107425(-)$1	263	14	31	13.9297
UGUGUGUUUGGAGGCCA	chr14:35871106-35871377(-)$1	271	126	143	12.8741
AGAAGUUAUUUUCUUUC	chr1:160188591-160188857(-)$1	266	235	252	13.2117
CUGGGAAAAGACCCCCU	chr20:62572463-62572673(-)$1	210	64	81	12.6824
ACUCUCAAAAGCUAGGG	chr17:26910502-26910779(-)$1	277	174	191	14.3471
AUCUUUCAUUAUUAAGA	chr3:38539013-38539278(+)$1	265	22	39	13.4805
auacucuuaaauuagua	chr3:43740880-43741151(+)$1	271	183	200	14.4412
GUUUUUUAUAUCUAAAA	chrX:40982607-40982874(+)$1	267	69	86	13.9297
GAUAAUGCAAUAUUUGU	chr16:11862181-11862468(-)$1	287	55	72	14.4569
UGGCACAAAGUUAUGCC	chr17:57917026-57917269(+)$1	243	184	201	13.9297
CUUUAGUAAAUAAUAAU	chr2:171912926-171913185(-)$1	259	70	87	13.3473
UUUGGAAAGGGAACCAA	chr6:31728886-31729096(+)$1	210	132	149	14.4596
CAAACUGAAUUGUGUUU	chr17:62499057-62499348(-)$1	291	68	85	14.4928
UUCCCUUUUUGUUGGAA	chr15:76576026-76576276(-)$1	250	208	225	13.0280
GUAGAAAAUCACAUCUA	chr4:6825799-6826051(+)$1	252	154	171	13.9297
AACGGUUCCCCUCCCUC	chr19:54972712-54972964(+)$1	252	150	167	12.8772
AGUGAUUAUGUGUUCAU	chr3:107765969-107766250(-)$1	281	79	96	13.9297
UGUGCUUGCAUUUGCCG	chr3:98235849-98236096(-)$1	247	137	154	13.2635
CCAGUUUGAUUUUACAG	chrX:151128306-151128561(-)$1	255	195	212	13.0352
CAGGGGAGCUCUACACC	chr15:91504143-91504398(+)$1	255	114	131	13.7242
UUGCUUCCCUUUUAGCA	chr2:176844445-176844715(-)$1	270	104	121	14.4412
GGCCUGAAAUAAAAGGU	chr17:40744030-40744295(-)$1	265	207	224	14.4569
GUGGGUUUUUACUCCUA	chr8:64081802-64082076(+)$1	274	20	37	13.9297
GUCAUGGAUAAAAAUGA	chr8:101960996-101961231(-)$1	235	111	128	14.1846
uuauuuuuuuauugaua	chrX:154001406-154001624(+)$1	218	179	196	13.9297
CUCCUCUCCCCUAAGGA	chr11:9599239-9599503(+)$1	264	126	143	13.4805
UGUGUGGUUUCUGAUUC	chr1:16892151-16892411(-)$1	260	57	74	12.8236
GAGAGGCUGGUAACUCA	chr16:31202609-31202859(+)$1	250	54	71	12.0121
CUAGAAACUCCCCUCUC	chr6:31499063-31499304(-)$1	241	32	49	12.8347
CUCACUAACUAACGUGA	chr7:140482798-140483070(-)$1	272	159	176	14.2583
AACUCGGACUACAGAAG	chr5:6605327-6605585(-)$1	258	109	126	12.4725
UAUAGGAAUUUUACUGU	chr4:56291430-56291697(+)$1	267	68	85	13.9297
ACCUCACAAAGAAGGGG	chr12:57883875-57884125(+)$1	250	31	48	13.4805
GGAGCAAAAAUCAGCUC	chr12:50399037-50399290(-)$1	253	183	200	14.0785
UGUACGGAAAGAAGAUA	chr17:56083200-56083439(-)$1	239	211	228	13.2477
AUUAUUCCUCAUUAUUG	chr14:31380875-31381165(-)$1	290	8	25	13.1378
CUGGGCCGCUGCUCCCA	chr6:31696873-31697126(-)$1	253	209	226	14.3471
ccagauugacagcuuug	chr2:175957184-175957444(-)$1	260	124	141	14.2583
UGGAAGACAAGCAUUCC	chr10:28884516-28884778(+)$1	262	145	162	13.9297
CUACUGAUCAUGUGGUA	chr1:163295710-163295972(+)$1	262	68	85	14.4569
UGAGGUUAUAUAUUUUC	chr18:9931694-9931910(+)$1	216	26	43	13.6274
AAGUAAGUAAUUAUAUU	chr15:69714545-69714833(+)$1	288	227	244	12.3426
ACACUGGGAAAGAAGUA	chr3:141644261-141644490(+)$1	229	163	180	13.7070
GGGCAUAAAAUUCUGCA	chr16:277924-278201(-)$1	277	173	190	13.7983
UUCAUAAAAUUUAAUGA	chr10:28824364-28824589(+)$1	225	25	42	14.4596
AUACACAAAGAAAUGUA	chr15:60646274-60646526(-)$1	252	69	86	13.2117
gauggaacaagacccuc	chr1:224437858-224438132(-)$1	274	27	44	12.9237
UCAUGUUGCUUCUCAGU	chr1:1326774-1327064(-)$1	290	54	71	12.7303
GAUGUUUCCAUAUGCAU	chr2:175939662-175939927(-)$1	265	155	172	14.4412
GAGUCUUAAAUCUGGUU	chr12:122999151-122999421(-)$1	270	63	80	13.6274
UGAGUAAGGAAGAACUC	chr8:8865391-8865655(+)$1	264	215	232	13.9297
UUCAUCAUAAGUCGUGC	chr1:46125931-46126196(-)$1	265	220	237	13.5792
CUGGUAAACUCAGACCA	chr4:99955239-99955535(+)$1	296	225	242	14.4596
UGAGCCUCUCAAAGUUC	chr12:67704695-67704962(+)$1	267	221	238	13.9297

#DB
(((((........))))	chr5:94884249-94884526(-)$1	1	124	141	13.9297
(((((........))))	chr4:119736145-119736422(-)$1	1	185	202	13.9297
(((((........))))	chr17:2381022-2381290(-)$1	1	22	39	13.6274
(((((........))))	chr10:121339386-121339617(-)$1	1	77	94	13.9297
.((((........))))	chr2:8823688-8823974(+)$1	1	112	129	13.4805
(((((........))))	chr18:13759839-13760128(+)$1	1	67	84	12.3426
(((((........))))	chr4:175238379-175238633(+)$1	1	83	100	12.3426
.((((........))))	chr4:83275140-83275370(-)$1	1	132	149	13.4805
(((((........))))	chr18:77896930-77897225(+)$1	1	13	30	13.2117
)((((........))))	chr18:43845192-43845461(+)$1	1	230	247	13.7336
.((.(........).))	chr7:91874970-91875278(-)$1	1	249	266	12.0449
(((((........))))	chr5:32143824-32144095(-)$1	1	248	265	13.6274
(..((........))..	chr7:148524218-148524472(-)$1	1	67	84	13.0237
(((((........))).	chr9:95015607-95015837(-)$1	1	136	153	13.2970
(((((........))))	chr1:71530667-71530931(-)$1	1	131	148	13.9297
(.(((........))))	chr6:32943958-32944184(+)$1	1	138	155	13.6018
.((((........))))	chrX:154009477-154009731(-)$1	1	154	171	13.4805
((.((........)).)	chr10:75006440-75006699(-)$1	1	138	155	12.5736
(((((........))))	chr2:113410403-113410649(+)$1	1	7	24	13.9297
.((((........))))	chr19:49699578-49699838(+)$1	1	219	236	14.4569
(((((........))))	chr12:124107162-124107425(-)$1	1	14	31	13.9297
((.((........))))	chr14:35871106-35871377(-)$1	1	126	143	12.8741
(((((........))))	chr1:160188591-160188857(-)$1	1	235	252	13.2117
(.(((........))).	chr20:62572463-62572673(-)$1	1	64	81	12.6824
(((((........))))	chr17:26910502-26910779(-)$1	1	174	191	14.3471
.((((........))))	chr3:38539013-38539278(+)$1	1	22	39	13.4805
.((((........))))	chr3:43740880-43741151(+)$1	1	183	200	14.4412
(((((........))))	chrX:40982607-40982874(+)$1	1	69	86	13.9297
.((((........))))	chr16:11862181-11862468(-)$1	1	55	72	14.4569
(((((........))))	chr17:57917026-57917269(+)$1	1	184	201	13.9297
(.(((........))).	chr2:171912926-171913185(-)$1	1	70	87	13.3473
.((((........))))	chr6:31728886-31729096(+)$1	1	132	149	14.4596
.((((........))))	chr17:62499057-62499348(-)$1	1	68	85	14.4928
((.((........)).)	chr15:76576026-76576276(-)$1	1	208	225	13.0280
(((((........))))	chr4:6825799-6826051(+)$1	1	154	171	13.9297
...((........))..	chr19:54972712-54972964(+)$1	1	150	167	12.8772
(((((........))))	chr3:107765969-107766250(-)$1	1	79	96	13.9297
((.((........))))	chr3:98235849-98236096(-)$1	1	137	154	13.2635
((.((........)).)	chrX:151128306-151128561(-)$1	1	195	212	13.0352
(((((........).))	chr15:91504143-91504398(+)$1	1	114	131	13.7242
.((((........))))	chr2:176844445-176844715(-)$1	1	104	121	14.4412
.((((........))))	chr17:40744030-40744295(-)$1	1	207	224	14.4569
(((((........))))	chr8:64081802-64082076(+)$1	1	20	37	13.9297
(((((........))))	chr8:101960996-101961231(-)$1	1	111	128	14.1846
(((((........))))	chrX:154001406-154001624(+)$1	1	179	196	13.9297
.((((........))))	chr11:9599239-9599503(+)$1	1	126	143	13.4805
...((........))..	chr1:16892151-16892411(-)$1	1	57	74	12.8236
..(((........))).	chr16:31202609-31202859(+)$1	1	54	71	12.0121
..(((........))).	chr6:31499063-31499304(-)$1	1	32	49	12.8347
(((((........))))	chr7:140482798-140483070(-)$1	1	159	176	14.2583
..(((........).))	chr5:6605327-6605585(-)$1	1	109	126	12.4725
(((((........))))	chr4:56291430-56291697(+)$1	1	68	85	13.9297
.((((........))))	chr12:57883875-57884125(+)$1	1	31	48	13.4805
)((((........))))	chr12:50399037-50399290(-)$1	1	183	200	14.0785
(((.(........))))	chr17:56083200-56083439(-)$1	1	211	228	13.2477
((.((........)).)	chr14:31380875-31381165(-)$1	1	8	25	13.1378
(((((........))))	chr6:31696873-31697126(-)$1	1	209	226	14.3471
)((((........))))	chr2:175957184-175957444(-)$1	1	124	141	14.2583
(((((........))))	chr10:28884516-28884778(+)$1	1	145	162	13.9297
.((((........))))	chr1:163295710-163295972(+)$1	1	68	85	14.4569
(((((........))))	chr18:9931694-9931910(+)$1	1	26	43	13.6274
(((((........))))	chr15:69714545-69714833(+)$1	1	227	244	12.3426
..(((........))).	chr3:141644261-141644490(+)$1	1	163	180	13.7070
..(((........))).	chr16:277924-278201(-)$1	1	173	190	13.7983
.((((........))))	chr10:28824364-28824589(+)$1	1	25	42	14.4596
(((((........))))	chr15:60646274-60646526(-)$1	1	69	86	13.2117
((.((........))))	chr1:224437858-224438132(-)$1	1	27	44	12.9237
(..((........))))	chr1:1326774-1327064(-)$1	1	54	71	12.7303
.((((........))))	chr2:175939662-175939927(-)$1	1	155	172	14.4412
(((((........))))	chr12:122999151-122999421(-)$1	1	63	80	13.6274
(((((........))))	chr8:8865391-8865655(+)$1	1	215	232	13.9297
..(((........))).	chr1:46125931-46126196(-)$1	1	220	237	13.5792
.((((........))))	chr4:99955239-99955535(+)$1	1	225	242	14.4596
(((((........))))	chr12:67704695-67704962(+)$1	1	221	238	13.9297

#PSSM
e : 0.28	: : 0.08	f : 0.08	# : 0.08	= : 0.06	[ : 0.06	d : 0.06	g : 0.05	c : 0.05	" : 0.05	! : 0.05	b : 0.02	H : 0.01	' : 0.01	
d : 0.35	e : 0.24	= : 0.06	f : 0.06	! : 0.06	g : 0.05	[ : 0.04	# : 0.04	c : 0.02	b : 0.01	' : 0.01	" : 0.01	
d : 0.33	e : 0.21	c : 0.13	[ : 0.09	= : 0.05	f : 0.04	g : 0.04	b : 0.02	! : 0.02	# : 0.02	
d : 0.33	e : 0.21	b : 0.16	c : 0.12	= : 0.05	f : 0.04	g : 0.04	[ : 0.02	
d : 0.32	e : 0.21	b : 0.14	c : 0.12	= : 0.05	a : 0.05	f : 0.04	g : 0.04	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.32	e : 0.21	b : 0.14	c : 0.12	= : 0.05	a : 0.05	f : 0.04	g : 0.04	
d : 0.32	e : 0.21	b : 0.14	c : 0.13	= : 0.05	f : 0.04	g : 0.04	] : 0.04	
d : 0.33	e : 0.22	c : 0.14	= : 0.05	f : 0.05	g : 0.05	] : 0.05	b : 0.02	3 : 0.02	4 : 0.01	
d : 0.36	e : 0.24	= : 0.06	f : 0.06	g : 0.05	] : 0.04	b : 0.02	3 : 0.02	c : 0.02	5 : 0.02	4 : 0.02	8 : 0.01	2 : 0.01	

#score	1005.804223908073
#seq	74
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_CDS_m1_run2.txt

#BEAR
!!eeeeeyyyyyyyyyyyyyyyyeeeee22ff	chr14:94849421-94849633(-)$1	212	57	89	26.1061
::ffffffxxxxxxxxxxxxxxxffffff:::	chr12:7045614-7045864(+)$1	250	191	223	19.1896
cc[a[cccxxxxxxxxxxxxxxxccc]a]ccc	chr12:9242915-9243179(-)$1	264	1	33	23.8464
!!ffffffxxxxxxxxxxxxxxxffffff22d	chr11:319633-319960(-)$1	327	56	88	23.3395
gggggg[ayyyyyyyyyyyyyyyya]gggggg	chr17:66526481-66526752(+)$1	271	214	246	25.9516
###eeeeewwwwwwwwwwwwwweeeeefffff	chr12:9243696-9243920(-)$1	224	100	132	21.4667
fffff^^^^^^^^^^^^^^^^^^ffffffiii	chr17:80194941-80195218(+)$1	277	41	73	23.4068
[gggggggxxxxxxxxxxxxxxxggggggga=	chr12:125270814-125271068(-)$1	254	143	175	23.8376
##ffffffuuuuuuuuuuuuffffff22accc	chr11:125472671-125472943(+)$1	272	149	181	18.4937
[ccc[cccyyyyyyyyyyyyyyyycccccc]a	chr16:29817954-29818179(+)$1	225	145	177	26.4169
[ccc^^^^^^^^^^^^^^^^^^^^^^^ccc]b	chr11:63448937-63449236(+)$1	299	94	126	25.5254
[ccc^^^^^^^^^^^^^^^^^^^^^^ccceee	chr11:72425137-72425431(-)$1	294	82	114	25.2350
!!eeeeeyyyyyyyyyyyyyyyyeeeee22ff	chr14:94849415-94849621(-)$1	206	45	77	26.1061
eee[ddddxxxxxxxxxxxxxxxdddd]eeee	chr17:80049381-80049600(-)$1	219	63	95	21.8834
[ccc[bb^^^^^^^^^^^^^^^^^^bbcccae	chr11:64089054-64089330(+)$1	276	75	107	24.6300
!!ffffff^^^^^^^^^^^^^^^^^^^^^^^^	chr6:138752568-138752810(-)$1	242	159	191	25.7452
[dddd^^^^^^^^^^^^^^^^^^^ddddbb22	chrX:47074213-47074561(+)$1	348	221	253	23.3159
eeeee[cccwwwwwwwwwwwwwwccc]eeeee	chr7:5352340-5352640(-)$1	300	114	146	21.2683
eeeee^^^^^^^^^^^^^^^^^^^^eeeee::	chr6:34212675-34212951(+)$1	276	125	157	23.3412
"dddd^^^^^^^^^^^^^^^^^^dddd333bb	chr7:73011659-73011938(-)$1	279	43	75	23.7867
hhhhh[cccwwwwwwwwwwwwwwccc333hhh	chr19:56206493-56206785(+)$1	292	160	192	20.4936
[bb!!dddduuuuuuuuuuuuddddbb]ccce	chr17:1649020-1649290(+)$1	270	126	158	17.8972
[eeeee[bbuuuuuuuuuuuubbeeeee]bb2	chr17:6917495-6917799(+)$1	304	227	259	19.4632
iiiiiiii^^^^^^^^^^^^^^^^^^^^^iii	chr19:45496083-45496388(+)$1	305	252	284	24.7797
[ffffff^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:70443706-70443942(+)$1	236	131	163	25.9803
+gggggggxxxxxxxxxxxxxxxggggggg88	chr17:36891502-36891802(-)$1	300	187	219	22.4218
[ccc[bbyyyyyyyyyyyyyyyybb]ccc]dd	chr3:186338320-186338567(+)$1	247	121	153	25.3199
d!!ccczzzzzzzzzzzzzzzzzccc22dddd	chr19:41270964-41271314(+)$1	350	104	136	21.4721
Gffffffzzzzzzzzzzzzzzzzzffffff:c	chr17:80046277-80046509(-)$1	232	43	75	21.1302
[ffffff^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:70443662-70443906(+)$1	244	175	207	25.9803
[ccc^^^^^^^^^^^^^^^^^^^^^ccc]===	chr12:106641222-106641501(-)$1	279	99	131	25.4146
dd[eeeeexxxxxxxxxxxxxxxeeeee22dd	chr3:48461483-48461773(-)$1	290	188	220	23.1449
ffffffbb^^^^^^^^^^^^^^^^^^bb]fff	chr14:94844661-94844891(-)$1	230	15	47	23.3479
!!eeeeeyyyyyyyyyyyyyyyyeeeee22ff	chr14:94849433-94849677(-)$1	244	101	133	26.1061
ffffdddd^^^^^^^^^^^^^^^^^^^^^^^^	chr16:30012572-30012915(+)$1	343	160	192	24.4761
!!eeeeeyyyyyyyyyyyyyyyyeeeee22ff	chr14:94849371-94849598(-)$1	227	22	54	26.1061
hhhhhhhh^^^^^^^^^^^^^^^^^^^^^hhh	chr19:48894504-48894799(-)$1	295	25	57	22.4678
[dddd^^^^^^^^^^^^^^^^^^dddd]bb]e	chr20:2442226-2442551(-)$1	325	44	76	23.1471
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:7045498-7045759(+)$1	261	196	228	26.3258
)))eeeeexxxxxxxxxxxxxxxeeeee9999	chr12:57919156-57919428(+)$1	272	208	240	20.6375
[ccc[bbzzzzzzzzzzzzzzzzzbb]cccee	chrX:152955725-152955979(+)$1	254	105	137	22.3061
!!ffffffxxxxxxxxxxxxxxxffffffbb]	chr11:64534271-64534633(-)$1	362	225	257	23.3624
""gggggggvvvvvvvvvvvvvggggggg]bb	chrX:70767591-70767858(+)$1	267	38	70	17.8230
dddd[cccyyyyyyyyyyyyyyyycccddddd	chr1:8923197-8923456(-)$1	259	170	202	24.5990
:gggggggxxxxxxxxxxxxxxxgggggggdd	chr1:161192003-161192234(-)$1	231	68	100	22.3907
!!ffffff^^^^^^^^^^^^^^^^^^^^^^^^	chr6:138752507-138752768(-)$1	261	117	149	25.7452
!ffffff^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:582463-582682(+)$1	219	57	89	25.9629
dd[eeeeexxxxxxxxxxxxxxxeeeee22dd	chr3:48461369-48461614(-)$1	245	29	61	23.1449
eeee[ccc^^^^^^^^^^^^^^^^^^^^^^^^	chr9:86586751-86587003(-)$1	252	204	236	25.2313
:gggggggxxxxxxxxxxxxxxxggggggg::	chr1:161192054-161192290(-)$1	236	124	156	21.2219
[a[ccczzzzzzzzzzzzzzzzzccc]a]bbc	chr7:73011738-73012029(-)$1	291	31	63	22.7700
iiieeeeezzzzzzzzzzzzzzzzzeeeee::	chr2:171822199-171822524(+)$1	325	226	258	21.0999
^^^^^^^^^^^^^^^^^^^^^^^eeeee]ddd	chr1:230839894-230840136(-)$1	242	26	58	23.4329
[ggggggg^^^^^^^^^^^^^^^^^^^ggggg	chr17:40947039-40947460(+)$1	421	209	241	25.2347
ccc[ddddyyyyyyyyyyyyyyyydddd22cc	chr14:101200879-101201145(+)$1	266	67	99	24.6811
"""eeeeeuuuuuuuuuuuueeeee333eeee	chr16:30079903-30080121(+)$1	218	37	69	19.5594
::ffffffxxxxxxxxxxxxxxxffffff:::	chr12:9268260-9268528(-)$1	268	234	266	19.1896
[ccc[ccczzzzzzzzzzzzzzzzzcccccc]	chr15:44085877-44086150(+)$1	273	4	36	23.2033
[eeeee[bbuuuuuuuuuuuubbeeeee]bb2	chr17:6917599-6917924(+)$1	325	123	155	19.4632
[ccc[bbyyyyyyyyyyyyyyyybb]ccc]dd	chr3:186338367-186338601(+)$1	234	74	106	25.3199
:gggggggxxxxxxxxxxxxxxxgggggggdd	chr1:161192034-161192254(-)$1	220	88	120	22.3907
^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb::	chr4:83763429-83763671(-)$1	242	128	160	23.1605
^^^^^^^^^^^^^^^^^^^^^^^^ffffff::	chr17:17723517-17723808(-)$1	291	160	192	22.3901
eeeee[bb^^^^^^^^^^^^^^^^^^^^^^^^	chr17:46136078-46136339(+)$1	261	85	117	24.8296
hhhhhhhh^^^^^^^^^^^^^^^^^^^^^hhh	chrX:70444303-70444592(+)$1	289	196	228	22.4678
^^^^^^^^^^^^^^^^^^^^^^^ccc]bb]dd	chr12:56506560-56506899(+)$1	339	154	186	23.0541
gg!!eeeeewwwwwwwwwwwwwweeeee]ggg	chr5:138941159-138941480(+)$1	321	55	87	21.7369

#otherMatches

#Seq PSSM
CAAUGCCGUCUUCUGUCUCGUGGGGCAUCCUC	chr14:94849421-94849633(-)$1	212	57	89	26.1061
CAGGCCCCUUCCCUCCCUCUACUGGGGCCCAG	chr12:7045614-7045864(+)$1	250	191	223	19.1896
CAACCUGAAAUCUAACCAAUUCCUCAAGAUGC	chr12:9242915-9243179(-)$1	264	1	33	23.8464
UCUGGGCAUCCUCAUGACCAUUCUGCUCAUCG	chr11:319633-319960(-)$1	327	56	88	23.3395
CAGCUUCCUGUCUGUUUAUAUAUUGAAAGUUG	chr17:66526481-66526752(+)$1	271	214	246	25.9516
AACUACCUUCCCAAAUGCAUCCGGGUAAGGAU	chr12:9243696-9243920(-)$1	224	100	132	21.4667
GGGGGCUCUCACCACAUUCCCUUUCCUCCAGG	chr17:80194941-80195218(+)$1	277	41	73	23.4068
UCAUCUGCCAAAUCCGGAGCCAAGUAGGUGCU	chr12:125270814-125271068(-)$1	254	143	175	23.8376
ACCACCUUACCAAAGAGCUCAAGGUGAAGGAU	chr11:125472671-125472943(+)$1	272	149	181	18.4937
CCUCAUGAACUCCUUCCCGCCACCUCAGGGUC	chr16:29817954-29818179(+)$1	225	145	177	26.4169
CGGAUUAUUCUAUUUCCCCUCCCUCUCUCCCG	chr11:63448937-63449236(+)$1	299	94	126	25.5254
AGGAGUCAUUGCUGCCAUCAUUAUCAUCCCCU	chr11:72425137-72425431(-)$1	294	82	114	25.2350
CAAUGCCGUCUUCUGUCUCGUGGGGCAUCCUC	chr14:94849415-94849621(-)$1	206	45	77	26.1061
GCUCUGGGCCCCCAACCUGCACUUCCAUAGCC	chr17:80049381-80049600(-)$1	219	63	95	21.8834
cagccuggcacccaauaucaucucacagcucu	chr11:64089054-64089330(+)$1	276	75	107	24.6300
CAGACAGGUCUCCUUUCCUUCCUCCCCCACCU	chr6:138752568-138752810(-)$1	242	159	191	25.7452
UGUUCCCUCAUCAUCCCCCUACCUGAACCCCU	chrX:47074213-47074561(+)$1	348	221	253	23.3159
uccuccucuucuuccuccACCACAGACGAGGA	chr7:5352340-5352640(-)$1	300	114	146	21.2683
ugugcccucaccaccacACUACACAGCACACC	chr6:34212675-34212951(+)$1	276	125	157	23.3412
UGGAGCCCUGCCCCCCACCUCCCUUCCCUCCC	chr7:73011659-73011938(-)$1	279	43	75	23.7867
GGCCCUGGCCUGCCCCCCAUGAUgcccccggg	chr19:56206493-56206785(+)$1	292	160	192	20.4936
CCAACCUCAUCCUGUCACCCCUGAGUGUGGCC	chr17:1649020-1649290(+)$1	270	126	158	17.8972
GAGAGACUGAAUCCCUUCUCCCAUCUCUGGCA	chr17:6917495-6917799(+)$1	304	227	259	19.4632
GGAGGCGCUGUCUGUCCCUCUGUCCCUCUGUG	chr19:45496083-45496388(+)$1	305	252	284	24.7797
ACGUGGCUCACCAGCAACACAUAGAGAAGAAA	chrX:70443706-70443942(+)$1	236	131	163	25.9803
CCCCCACUCCCCCUUCGACAGCCAGUGGGGCC	chr17:36891502-36891802(-)$1	300	187	219	22.4218
AUGCACCUCCGUCCCCUCCACUUGGCGCACCU	chr3:186338320-186338567(+)$1	247	121	153	25.3199
GUAGCACCUUUUCCCCCCAUGCCUGCCCCUUC	chr19:41270964-41271314(+)$1	350	104	136	21.4721
GUGCUACCCAUGCCUCCCUUCUCCGUAGCAUC	chr17:80046277-80046509(-)$1	232	43	75	21.1302
ACGUGGCUCACCAGCAACACAUAGAGAAGAAA	chrX:70443662-70443906(+)$1	244	175	207	25.9803
cggcAAGUCCUCCUCCUCCUCCUccgccuccg	chr12:106641222-106641501(-)$1	279	99	131	25.4146
CCUGCUCCUGACACCCUUCCCGUGGAGCCUGG	chr3:48461483-48461773(-)$1	290	188	220	23.1449
GUUCAACAAACCCUUUGUCUUCUUAAUGAUUG	chr14:94844661-94844891(-)$1	230	15	47	23.3479
CAAUGCCGUCUUCUGUCUCGUGGGGCAUCCUC	chr14:94849433-94849677(-)$1	244	101	133	26.1061
agcuggccuccucccgcuacccccCAUUCCCU	chr16:30012572-30012915(+)$1	343	160	192	24.4761
CAAUGCCGUCUUCUGUCUCGUGGGGCAUCCUC	chr14:94849371-94849598(-)$1	227	22	54	26.1061
UUUGCUCCCCCUCCCAAAGUCCCCUCCCCGGA	chr19:48894504-48894799(-)$1	295	25	57	22.4678
CACAGACCUGUUUGUUUCUUAUGCUGUUGUUC	chr20:2442226-2442551(-)$1	325	44	76	23.1471
AUCAGCCCCCCAAGUAUACUCAGCCUUCUCUC	chr12:7045498-7045759(+)$1	261	196	228	26.3258
CAAGGGGCAAUGCCCCCUCUCCAGCCCCACCU	chr12:57919156-57919428(+)$1	272	208	240	20.6375
UGUGUUCCUUAUUCCCUACGUCCUGAUCGCCC	chrX:152955725-152955979(+)$1	254	105	137	22.3061
AGUAUGGCUUCCAGUACCCCCUUGCCAUGGCA	chr11:64534271-64534633(-)$1	362	225	257	23.3624
CAGAGAAGGAAUAAUGAUAUCACCUUCUUCCC	chrX:70767591-70767858(+)$1	267	38	70	17.8230
UGAGCGUCUCCUCCUUUCUUCUCUGACCUCAA	chr1:8923197-8923456(-)$1	259	170	202	24.5990
AGCUGGCCUCUAGAACACCCACUGGCCAGUCC	chr1:161192003-161192234(-)$1	231	68	100	22.3907
CAGACAGGUCUCCUUUCCUUCCUCCCCCACCU	chr6:138752507-138752768(-)$1	261	117	149	25.7452
AGCGGGCAGCACCAGAAUGACAAAGGCAAGAA	chr19:582463-582682(+)$1	219	57	89	25.9629
CCUGCUCCUGACACCCUUCCCGUGGAGCCUGG	chr3:48461369-48461614(-)$1	245	29	61	23.1449
GGGGUAAGUUGUUUUUUUUGUUGUUGUUGUUU	chr9:86586751-86587003(-)$1	252	204	236	25.2313
AGCUGGCCUCUAGAACACCCACUGGCCAGUCC	chr1:161192054-161192290(-)$1	236	124	156	21.2219
AGUUCUGAUUUCCUCCUUCCUGAAGACCCCAA	chr7:73011738-73012029(-)$1	291	31	63	22.7700
AGCUGCUGUCUUCCCUCCCGCCCACCAGCAAC	chr2:171822199-171822524(+)$1	325	226	258	21.0999
CUUCCUAACUGUGCAUCAUCUCCCCAGGACCA	chr1:230839894-230840136(-)$1	242	26	58	23.4329
UGGCCCAGUCCCUGCUGUCCCCCUCACCUGGG	chr17:40947039-40947460(+)$1	421	209	241	25.2347
UGAAAGAGCUCAACAAGAAAACCCCUCUCCUC	chr14:101200879-101201145(+)$1	266	67	99	24.6811
UAAUGUUGUUACCCUGACCCCAACAGGUAGAC	chr16:30079903-30080121(+)$1	218	37	69	19.5594
UAUAUCAUUCCUUUUUCUUUCCUAUGAUACUG	chr12:9268260-9268528(-)$1	268	234	266	19.1896
CAGUGCCCCAUCAUCUCUACCCCCAGGGACUC	chr15:44085877-44086150(+)$1	273	4	36	23.2033
GAGAGACUGAAUCCCUUCUCCCAUCUCUGGCA	chr17:6917599-6917924(+)$1	325	123	155	19.4632
AUGCACCUCCGUCCCCUCCACUUGGCGCACCU	chr3:186338367-186338601(+)$1	234	74	106	25.3199
AGCUGGCCUCUAGAACACCCACUGGCCAGUCC	chr1:161192034-161192254(-)$1	220	88	120	22.3907
UUACCCUAACACCCCUUACAUAUCUUCUGCUU	chr4:83763429-83763671(-)$1	242	128	160	23.1605
GCCCUCACCCCUGUCCCCUCCCCAGCCUGCAC	chr17:17723517-17723808(-)$1	291	160	192	22.3901
GAAGGCAGuucuuccucuucuuccuccuccuc	chr17:46136078-46136339(+)$1	261	85	117	24.8296
GCUGGGGAUUACUCGAUCAAAACCUUCCUUCC	chrX:70444303-70444592(+)$1	289	196	228	22.4678
CUUCCCACCAAACCCCAGACUCUGUGAAGUGC	chr12:56506560-56506899(+)$1	339	154	186	23.0541
GGCCCCGGCCCUCAGCCCGUCCCGCCGGACCC	chr5:138941159-138941480(+)$1	321	55	87	21.7369

#DB
..(((((................)))))..))	chr14:94849421-94849633(-)$1	1	57	89	26.1061
..((((((...............))))))...	chr12:7045614-7045864(+)$1	1	191	223	19.1896
((.(.(((...............))).).)))	chr12:9242915-9243179(-)$1	1	1	33	23.8464
..((((((...............))))))..)	chr11:319633-319960(-)$1	1	56	88	23.3395
((((((.(................).))))))	chr17:66526481-66526752(+)$1	1	214	246	25.9516
...(((((..............))))))))))	chr12:9243696-9243920(-)$1	1	100	132	21.4667
(((((..................))))))(((	chr17:80194941-80195218(+)$1	1	41	73	23.4068
.(((((((...............))))))))(	chr12:125270814-125271068(-)$1	1	143	175	23.8376
..((((((............))))))..))))	chr11:125472671-125472943(+)$1	1	149	181	18.4937
.(((.(((................)))))).)	chr16:29817954-29818179(+)$1	1	145	177	26.4169
.(((.......................))).)	chr11:63448937-63449236(+)$1	1	94	126	25.5254
.(((......................))))))	chr11:72425137-72425431(-)$1	1	82	114	25.2350
..(((((................)))))..))	chr14:94849415-94849621(-)$1	1	45	77	26.1061
(((.((((...............)))).))))	chr17:80049381-80049600(-)$1	1	63	95	21.8834
.(((.((..................)))))))	chr11:64089054-64089330(+)$1	1	75	107	24.6300
..((((((........................	chr6:138752568-138752810(-)$1	1	159	191	25.7452
.((((...................))))))..	chrX:47074213-47074561(+)$1	1	221	253	23.3159
(((((.(((..............))).)))))	chr7:5352340-5352640(-)$1	1	114	146	21.2683
(((((....................)))))..	chr6:34212675-34212951(+)$1	1	125	157	23.3412
.((((..................))))...))	chr7:73011659-73011938(-)$1	1	43	75	23.7867
(((((.(((..............)))...)))	chr19:56206493-56206785(+)$1	1	160	192	20.4936
.((..((((............)))))).)))(	chr17:1649020-1649290(+)$1	1	126	158	17.8972
.(((((.((............))))))).)).	chr17:6917495-6917799(+)$1	1	227	259	19.4632
((((((((.....................)))	chr19:45496083-45496388(+)$1	1	252	284	24.7797
.((((((.........................	chrX:70443706-70443942(+)$1	1	131	163	25.9803
.(((((((...............)))))))..	chr17:36891502-36891802(-)$1	1	187	219	22.4218
.(((.((................)).))).))	chr3:186338320-186338567(+)$1	1	121	153	25.3199
(..(((.................)))..))))	chr19:41270964-41271314(+)$1	1	104	136	21.4721
(((((((.................)))))).(	chr17:80046277-80046509(-)$1	1	43	75	21.1302
.((((((.........................	chrX:70443662-70443906(+)$1	1	175	207	25.9803
.(((.....................))).)))	chr12:106641222-106641501(-)$1	1	99	131	25.4146
((.(((((...............)))))..))	chr3:48461483-48461773(-)$1	1	188	220	23.1449
((((((((..................)).)))	chr14:94844661-94844891(-)$1	1	15	47	23.3479
..(((((................)))))..))	chr14:94849433-94849677(-)$1	1	101	133	26.1061
((((((((........................	chr16:30012572-30012915(+)$1	1	160	192	24.4761
..(((((................)))))..))	chr14:94849371-94849598(-)$1	1	22	54	26.1061
((((((((.....................)))	chr19:48894504-48894799(-)$1	1	25	57	22.4678
.((((..................)))).)).)	chr20:2442226-2442551(-)$1	1	44	76	23.1471
..(((((.........................	chr12:7045498-7045759(+)$1	1	196	228	26.3258
...(((((...............)))))....	chr12:57919156-57919428(+)$1	1	208	240	20.6375
.(((.((.................)).)))))	chrX:152955725-152955979(+)$1	1	105	137	22.3061
..((((((...............)))))))).	chr11:64534271-64534633(-)$1	1	225	257	23.3624
..(((((((.............))))))).))	chrX:70767591-70767858(+)$1	1	38	70	17.8230
((((.(((................))))))))	chr1:8923197-8923456(-)$1	1	170	202	24.5990
.(((((((...............)))))))((	chr1:161192003-161192234(-)$1	1	68	100	22.3907
..((((((........................	chr6:138752507-138752768(-)$1	1	117	149	25.7452
.((((((.........................	chr19:582463-582682(+)$1	1	57	89	25.9629
((.(((((...............)))))..))	chr3:48461369-48461614(-)$1	1	29	61	23.1449
((((.(((........................	chr9:86586751-86587003(-)$1	1	204	236	25.2313
.(((((((...............)))))))..	chr1:161192054-161192290(-)$1	1	124	156	21.2219
.(.(((.................))).).))(	chr7:73011738-73012029(-)$1	1	31	63	22.7700
)))(((((.................)))))..	chr2:171822199-171822524(+)$1	1	226	258	21.0999
.......................))))).)))	chr1:230839894-230840136(-)$1	1	26	58	23.4329
.(((((((...................)))))	chr17:40947039-40947460(+)$1	1	209	241	25.2347
(((.((((................))))..))	chr14:101200879-101201145(+)$1	1	67	99	24.6811
...(((((............)))))...))))	chr16:30079903-30080121(+)$1	1	37	69	19.5594
..((((((...............))))))...	chr12:9268260-9268528(-)$1	1	234	266	19.1896
.(((.(((.................)))))).	chr15:44085877-44086150(+)$1	1	4	36	23.2033
.(((((.((............))))))).)).	chr17:6917599-6917924(+)$1	1	123	155	19.4632
.(((.((................)).))).))	chr3:186338367-186338601(+)$1	1	74	106	25.3199
.(((((((...............)))))))((	chr1:161192034-161192254(-)$1	1	88	120	22.3907
............................))..	chr4:83763429-83763671(-)$1	1	128	160	23.1605
........................))))))..	chr17:17723517-17723808(-)$1	1	160	192	22.3901
(((((.((........................	chr17:46136078-46136339(+)$1	1	85	117	24.8296
((((((((.....................)))	chrX:70444303-70444592(+)$1	1	196	228	22.4678
.......................))).)).))	chr12:56506560-56506899(+)$1	1	154	186	23.0541
((..(((((..............))))).)))	chr5:138941159-138941480(+)$1	1	55	87	21.7369

#PSSM
[ : 0.28	! : 0.14	: : 0.07	e : 0.07	d : 0.05	^ : 0.05	f : 0.04	" : 0.04	h : 0.04	c : 0.02	g : 0.02	# : 0.02	i : 0.02	+ : 0.01	G : 0.01	) : 0.01	
c : 0.16	! : 0.14	g : 0.11	f : 0.10	e : 0.10	d : 0.08	^ : 0.05	h : 0.04	: : 0.02	# : 0.02	i : 0.02	" : 0.02	b : 0.01	) : 0.01	a : 0.01	
f : 0.20	e : 0.17	c : 0.14	g : 0.11	[ : 0.05	d : 0.05	^ : 0.05	h : 0.04	i : 0.02	! : 0.02	# : 0.01	b : 0.01	) : 0.01	" : 0.01	
e : 0.25	f : 0.20	c : 0.16	g : 0.11	d : 0.05	^ : 0.05	h : 0.04	[ : 0.02	! : 0.02	a : 0.01	i : 0.01	
e : 0.25	f : 0.19	[ : 0.13	g : 0.11	^ : 0.10	d : 0.08	h : 0.04	c : 0.02	! : 0.01	i : 0.01	
e : 0.20	f : 0.17	^ : 0.17	g : 0.11	c : 0.10	d : 0.05	b : 0.05	[ : 0.04	h : 0.02	i : 0.01	
e : 0.17	^ : 0.17	f : 0.16	c : 0.10	g : 0.10	b : 0.08	d : 0.05	[ : 0.04	z : 0.02	h : 0.02	i : 0.01	
^ : 0.25	f : 0.10	c : 0.10	e : 0.10	g : 0.10	y : 0.08	d : 0.05	b : 0.05	z : 0.05	h : 0.02	a : 0.01	i : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	u : 0.02	c : 0.02	b : 0.02	w : 0.01	d : 0.01	g : 0.01	e : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	u : 0.07	w : 0.05	v : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	u : 0.07	w : 0.05	v : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	u : 0.07	w : 0.05	v : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	u : 0.07	w : 0.05	v : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	u : 0.07	w : 0.05	v : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	u : 0.07	w : 0.05	v : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	u : 0.07	w : 0.05	v : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	u : 0.07	w : 0.05	v : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	u : 0.07	w : 0.05	v : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	u : 0.07	w : 0.05	v : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	u : 0.07	w : 0.05	v : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	w : 0.05	u : 0.04	f : 0.01	v : 0.01	e : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	w : 0.05	b : 0.02	f : 0.01	d : 0.01	v : 0.01	e : 0.01	
^ : 0.40	x : 0.20	y : 0.14	z : 0.08	w : 0.04	e : 0.02	b : 0.02	f : 0.01	d : 0.01	g : 0.01	
^ : 0.32	e : 0.19	f : 0.08	c : 0.08	g : 0.08	y : 0.05	d : 0.05	z : 0.05	b : 0.02	
^ : 0.29	e : 0.19	f : 0.11	c : 0.11	g : 0.08	d : 0.08	b : 0.04	z : 0.02	a : 0.01	
^ : 0.25	e : 0.20	c : 0.14	f : 0.11	g : 0.08	d : 0.07	] : 0.04	b : 0.04	3 : 0.01	
^ : 0.22	e : 0.20	f : 0.10	g : 0.10	c : 0.10	] : 0.07	d : 0.07	b : 0.04	2 : 0.02	3 : 0.02	
e : 0.20	^ : 0.19	c : 0.13	f : 0.11	g : 0.11	] : 0.04	d : 0.04	3 : 0.04	a : 0.02	2 : 0.02	b : 0.02	
^ : 0.17	c : 0.13	f : 0.11	] : 0.11	g : 0.11	2 : 0.10	e : 0.07	b : 0.05	3 : 0.02	d : 0.02	a : 0.01	9 : 0.01	
^ : 0.13	2 : 0.11	c : 0.11	g : 0.11	b : 0.10	e : 0.08	f : 0.05	] : 0.05	h : 0.04	d : 0.04	: : 0.02	i : 0.02	3 : 0.01	= : 0.01	9 : 0.01	
d : 0.14	^ : 0.13	: : 0.11	f : 0.08	b : 0.08	c : 0.07	e : 0.07	g : 0.04	] : 0.04	h : 0.04	2 : 0.02	i : 0.02	a : 0.02	8 : 0.01	= : 0.01	9 : 0.01	
d : 0.16	^ : 0.13	e : 0.11	: : 0.10	f : 0.08	c : 0.07	g : 0.04	b : 0.04	2 : 0.04	h : 0.04	i : 0.02	= : 0.02	] : 0.02	a : 0.01	8 : 0.01	9 : 0.01	

#score	1554.7791869446023
#seq	67
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_transcript_m2_run2.txt

#BEAR
fffff[awwwwwwwwwwwwwwa]f	chr16:74526754-74526970(-)$1	216	69	93	21.4128
gggdddduuuuuuuuuuuudddd2	chr14:95080944-95081156(+)$1	212	98	122	23.4185
::eeeeettttttttttteeeee=	chr2:97399214-97399438(-)$1	224	31	55	20.5846
gggggggtttttttttttgggggg	chr19:19232313-19232559(-)$1	246	213	237	23.0247
!!eeeeeuuuuuuuuuuuueeeee	chr12:9227236-9227452(-)$1	216	116	140	23.8159
ggggggguuuuuuuuuuuuggggg	chr17:26694660-26694904(-)$1	244	142	166	24.2582
[ddddbbtttttttttttbb]ddd	chr3:133494262-133494522(+)$1	260	93	117	21.7667
b[a[cccuuuuuuuuuuuuccc]a	chr12:51319186-51319404(+)$1	218	125	149	23.8344
!ccc[bbvvvvvvvvvvvvvbb]c	chr12:65116692-65116992(-)$1	300	170	194	22.6830
####ddddtttttttttttdddd2	chr13:100199155-100199390(+)$1	235	196	220	22.1924
eeee[bbwwwwwwwwwwwwwwbb]	chr3:186334907-186335117(+)$1	210	108	132	20.7933
[ccc!!attttttttttta22ccc	chr21:15746262-15746557(-)$1	295	143	167	22.9120
"""ddddtttttttttttdddd33	chr19:6707097-6707321(-)$1	224	118	142	22.5572
ddd[cccuuuuuuuuuuuuccc]d	chr5:55264030-55264288(-)$1	258	183	207	23.4482
ggggggguuuuuuuuuuuuggggg	chr13:48830269-48830513(+)$1	244	52	76	24.2582
b!!ddddattttttttttta]ddd	chr12:50146712-50146955(+)$1	243	85	109	22.8358
ddd!!bbuuuuuuuuuuuubb22d	chr11:115109118-115109332(-)$1	214	84	108	22.1880
[ccc[bbyyyyyyyyyyyyyyyyb	chr3:186338409-186338621(+)$1	212	32	56	20.9083
''''cccuuuuuuuuuuuuccc]b	chr12:50152065-50152275(+)$1	210	139	163	21.3023
[cccddddtttttttttttdddd]	chr4:155507191-155507426(-)$1	235	124	148	22.5579
=======uuuuuuuuuuuu=====	chr3:156266632-156266892(-)$1	260	90	114	24.3932
!!ccc[bbtttttttttttbb333	chr3:133477947-133478198(+)$1	251	45	69	22.4632
iiiiiiiitttttttttttiiiii	chr12:125294618-125294846(-)$1	228	171	195	22.6912
[eeeeewwwwwwwwwwwwwweeee	chr20:30149336-30149549(+)$1	213	104	128	21.7409
ggggggguuuuuuuuuuuuggggg	chr17:79804269-79804483(-)$1	214	127	151	24.2582
dd[cccwwwwwwwwwwwwwwccc]	chr12:7177438-7177691(+)$1	253	109	133	21.7170
:eeeeevvvvvvvvvvvvveeeee	chr17:1680614-1680846(+)$1	232	22	46	21.5274
fffff[awwwwwwwwwwwwwwa]f	chr16:74526783-74527038(-)$1	255	137	161	21.4128
ggggggguuuuuuuuuuuuggggg	chr15:34382488-34382725(-)$1	237	17	41	24.2582
gggggggtttttttttttgggggg	chr9:124072861-124073076(+)$1	215	6	30	23.0247
iiiiiiiitttttttttttiiiii	chr6:31962269-31962493(+)$1	224	129	153	22.6912
dffffffuuuuuuuuuuuufffff	chr19:45412292-45412506(+)$1	214	115	139	22.5861
g!!dddduuuuuuuuuuuudddd]	chr9:136232760-136232969(-)$1	209	28	52	23.7776
gggggggtttttttttttgggggg	chr11:75282770-75283056(+)$1	286	90	114	23.0247
c!!eeeeettttttttttteeeee	chr1:21546495-21546725(-)$1	230	17	41	22.6173
[eeeeewwwwwwwwwwwwwweeee	chr6:7298879-7299116(-)$1	237	134	158	21.7409
ee:dddduuuuuuuuuuuudddd:	chr3:186338586-186338809(+)$1	223	157	181	21.1354
ddddddddtttttttttttdddd:	chr14:70489839-70490088(+)$1	249	139	163	20.8017
gggg[bbuuuuuuuuuuuubb]gg	chr4:79436879-79437119(+)$1	240	180	204	23.4737
[ffffffyyyyyyyyyyyyyyyyf	chr22:39222404-39222784(-)$1	380	182	206	20.8152
:ffffffuuuuuuuuuuuufffff	chr15:81224172-81224416(+)$1	244	4	28	21.8483
cc!!ddddtttttttttttdddd2	chr17:79803507-79803718(-)$1	211	175	199	22.3330
""eeeeeuuuuuuuuuuuueeeee	chrX:115584091-115584347(+)$1	256	52	76	23.6354
ggggggguuuuuuuuuuuuggggg	chr11:75277810-75278063(+)$1	253	227	251	24.2582
!!eeeeettttttttttteeeee3	chr4:155529517-155529719(-)$1	202	112	136	22.8681
bb[ddddvvvvvvvvvvvvvdddd	chrX:48321244-48321465(-)$1	221	161	185	22.2096
c"""cccwwwwwwwwwwwwwwccc	chr16:88712447-88712672(-)$1	225	173	197	21.8644
hhhhhhhvvvvvvvvvvvvvhhhh	chr4:39448426-39448696(+)$1	270	26	50	21.7202
cceeeeeuuuuuuuuuuuueeeee	chr13:30091681-30091919(-)$1	238	157	181	23.4386
&&bbcccuuuuuuuuuuuuccc]b	chr11:118967647-118967873(-)$1	226	46	70	22.0194
gggggggtttttttttttgggggg	chr6:26217159-26217397(+)$1	238	5	29	23.0247
[ccc[bbtttttttttttbb]ccc	chr9:116823261-116823470(-)$1	209	72	96	22.4320
ffffffvvvvvvvvvvvvvfffff	chr7:99564577-99564844(-)$1	267	137	161	21.7448
hhhhhhhvvvvvvvvvvvvvhhhh	chr1:180158586-180158843(+)$1	257	168	192	21.7202
iiiiiiiuuuuuuuuuuuuiiiii	chr19:3206273-3206525(+)$1	252	215	239	24.2118
cc!!cccyyyyyyyyyyyyyyyyc	chr1:19549829-19550083(-)$1	254	17	41	21.3904

#otherMatches

#Seq PSSM
CAGGCUCUCCUACUUGUUAAUGUG	chr16:74526754-74526970(-)$1	216	69	93	21.4128
CUGGGGGCCCAUAAUACCACCCUG	chr14:95080944-95081156(+)$1	212	98	122	23.4185
AGUGAUAUAUUAUUCCUUUAUCAA	chr2:97399214-97399438(-)$1	224	31	55	20.5846
GACCCAUGCUGCAGUUAAGUGGGU	chr19:19232313-19232559(-)$1	246	213	237	23.0247
AGUGGGGCAUUUUUACGAACCCCA	chr12:9227236-9227452(-)$1	216	116	140	23.8159
UCCAGAGUGUCUUCUUCUUCUCUG	chr17:26694660-26694904(-)$1	244	142	166	24.2582
UGUGGAGGAGUAUGCGAACUGCCA	chr3:133494262-133494522(+)$1	260	93	117	21.7667
UGAGACCGGUGAGUGAAAGGGUGU	chr12:51319186-51319404(+)$1	218	125	149	23.8344
UGACCCAACAUGCCCUUCCCUGAG	chr12:65116692-65116992(-)$1	300	170	194	22.6830
UAUAAGUGUAAGUCAAAGCCACUG	chr13:100199155-100199390(+)$1	235	196	220	22.1924
CCUGCUGGCCCCGCUGAACGACAC	chr3:186334907-186335117(+)$1	210	108	132	20.7933
GAGGAGCAGGACAGGAAGGAACCU	chr21:15746262-15746557(-)$1	295	143	167	22.9120
GGACCCGUUUCAUCUCCCUGGGCG	chr19:6707097-6707321(-)$1	224	118	142	22.5572
UGGUACGUUAUUUUAAAUUUGUUU	chr5:55264030-55264288(-)$1	258	183	207	23.4482
GUGUACUACUGUGGAAUAAAGUAC	chr13:48830269-48830513(+)$1	244	52	76	24.2582
UUUUGCCCUUUGUAUGUUUGUGGC	chr12:50146712-50146955(+)$1	243	85	109	22.8358
GGAAAGUUACACCACCAUCACAGU	chr11:115109118-115109332(-)$1	214	84	108	22.1880
AUGCACCUCCGUCCCCUCCACUUG	chr3:186338409-186338621(+)$1	212	32	56	20.9083
UACCUGCUUCACCCUCAGUGCACU	chr12:50152065-50152275(+)$1	210	139	163	21.3023
GAGUACCACACAGAAAAACUGGUC	chr4:155507191-155507426(-)$1	235	124	148	22.5579
UUUCUUCCAGAGUAGCACAGAAGA	chr3:156266632-156266892(-)$1	260	90	114	24.3932
AUCUUUGUUCUUUUUUUAUGCCAU	chr3:133477947-133478198(+)$1	251	45	69	22.4632
AUGGCCAAAUUCUGUGGUGUUGGC	chr12:125294618-125294846(-)$1	228	171	195	22.6912
AAGAAGAAUACCCACACCUACUUC	chr20:30149336-30149549(+)$1	213	104	128	21.7409
GGCAGAGAGGAUCACAGAGUUCUG	chr17:79804269-79804483(-)$1	214	127	151	24.2582
UCUUCCGACUACAACCUCAUGGAU	chr12:7177438-7177691(+)$1	253	109	133	21.7170
CGCUGGACUAUCACCUUAACCAGC	chr17:1680614-1680846(+)$1	232	22	46	21.5274
CAGGCUCUCCUACUUGUUAAUGUG	chr16:74526783-74527038(-)$1	255	137	161	21.4128
CAGUAAUGUUUUUAAUGGAAUUAC	chr15:34382488-34382725(-)$1	237	17	41	24.2582
CAGAAUUUCCUUUACCUCAAUUCU	chr9:124072861-124073076(+)$1	215	6	30	23.0247
CCGCCGCUGUGUCUCUGAAGGUGG	chr6:31962269-31962493(+)$1	224	129	153	22.6912
CCUGGUGGAAGACAUGCAGCGCCA	chr19:45412292-45412506(+)$1	214	115	139	22.5861
GCUGAGACUCAAGUAUCUCUCUCU	chr9:136232760-136232969(-)$1	209	28	52	23.7776
UGACAAGAACAAGGCCGACUUGUC	chr11:75282770-75283056(+)$1	286	90	114	23.0247
ccUCCCCUGCUGUUAUAAUGGGGG	chr1:21546495-21546725(-)$1	230	17	41	22.6173
AACGUAAGUGAAAGUUGUAGUAUG	chr6:7298879-7299116(-)$1	237	134	158	21.7409
GUUUGGCACAGAAAACAUAGCCAC	chr3:186338586-186338809(+)$1	223	157	181	21.1354
GCCAGCUGGACAGCAAUAGCAGCA	chr14:70489839-70490088(+)$1	249	139	163	20.8017
CUCUACAAACACCUGAACCUGAAG	chr4:79436879-79437119(+)$1	240	180	204	23.4737
AGGGCACCCCCUUCUCCUACUCAG	chr22:39222404-39222784(-)$1	380	182	206	20.8152
AUCUUACUUCCUUAACUCCGUAGG	chr15:81224172-81224416(+)$1	244	4	28	21.8483
AGAACAUCGUCAUCGCCAAGAUGG	chr17:79803507-79803718(-)$1	211	175	199	22.3330
CUUGGUAACUAAUUUAUAAUAUCA	chrX:115584091-115584347(+)$1	256	52	76	23.6354
GGGUCCUCCUCCUCCUCCCAGGAC	chr11:75277810-75278063(+)$1	253	227	251	24.2582
GAAAUGACUUCCAACUUUUUAUUG	chr4:155529517-155529719(-)$1	202	112	136	22.8681
CUCGCCCUCAUGAAACACUUGGGU	chrX:48321244-48321465(-)$1	221	161	185	22.2096
CCCCGGCCACCCCCAUCCCCAGCC	chr16:88712447-88712672(-)$1	225	173	197	21.8644
CGCUCUGGCAACGACACCUACGGG	chr4:39448426-39448696(+)$1	270	26	50	21.7202
GGAGCCUUCCAAAAUCUCUGGGCU	chr13:30091681-30091919(-)$1	238	157	181	23.4386
CCUCCGUGUCUCCCUUUCUGCGUG	chr11:118967647-118967873(-)$1	226	46	70	22.0194
CAGUGGAUUGUUAGUUCUUCUGCU	chr6:26217159-26217397(+)$1	238	5	29	23.0247
UGCCUCUCUCCACUCCACAGCGGC	chr9:116823261-116823470(-)$1	209	72	96	22.4320
GCAGGACACAGCCCCCUACUCCUG	chr7:99564577-99564844(-)$1	267	137	161	21.7448
GAGAAAUAAAAUUCCCUACAGUUU	chr1:180158586-180158843(+)$1	257	168	192	21.7202
UCUCCCACCCCCUCACCCCUGGGG	chr19:3206273-3206525(+)$1	252	215	239	24.2118
CAGAGCCUGAACCCCAACCUGCUG	chr1:19549829-19550083(-)$1	254	17	41	21.3904

#DB
(((((.(..............).)	chr16:74526754-74526970(-)$1	1	69	93	21.4128
(((((((............)))).	chr14:95080944-95081156(+)$1	1	98	122	23.4185
..(((((...........)))))(	chr2:97399214-97399438(-)$1	1	31	55	20.5846
(((((((...........))))))	chr19:19232313-19232559(-)$1	1	213	237	23.0247
..(((((............)))))	chr12:9227236-9227452(-)$1	1	116	140	23.8159
(((((((............)))))	chr17:26694660-26694904(-)$1	1	142	166	24.2582
.((((((...........)).)))	chr3:133494262-133494522(+)$1	1	93	117	21.7667
(.(.(((............))).)	chr12:51319186-51319404(+)$1	1	125	149	23.8344
.(((.((.............)).)	chr12:65116692-65116992(-)$1	1	170	194	22.6830
....((((...........)))).	chr13:100199155-100199390(+)$1	1	196	220	22.1924
((((.((..............)).	chr3:186334907-186335117(+)$1	1	108	132	20.7933
.(((..(...........)..)))	chr21:15746262-15746557(-)$1	1	143	167	22.9120
...((((...........))))..	chr19:6707097-6707321(-)$1	1	118	142	22.5572
(((.(((............))).)	chr5:55264030-55264288(-)$1	1	183	207	23.4482
(((((((............)))))	chr13:48830269-48830513(+)$1	1	52	76	24.2582
(..(((((...........).)))	chr12:50146712-50146955(+)$1	1	85	109	22.8358
(((..((............))..)	chr11:115109118-115109332(-)$1	1	84	108	22.1880
.(((.((................)	chr3:186338409-186338621(+)$1	1	32	56	20.9083
....(((............))).)	chr12:50152065-50152275(+)$1	1	139	163	21.3023
.(((((((...........)))).	chr4:155507191-155507426(-)$1	1	124	148	22.5579
(((((((............)))))	chr3:156266632-156266892(-)$1	1	90	114	24.3932
..(((.((...........))...	chr3:133477947-133478198(+)$1	1	45	69	22.4632
((((((((...........)))))	chr12:125294618-125294846(-)$1	1	171	195	22.6912
.(((((..............))))	chr20:30149336-30149549(+)$1	1	104	128	21.7409
(((((((............)))))	chr17:79804269-79804483(-)$1	1	127	151	24.2582
((.(((..............))).	chr12:7177438-7177691(+)$1	1	109	133	21.7170
.(((((.............)))))	chr17:1680614-1680846(+)$1	1	22	46	21.5274
(((((.(..............).)	chr16:74526783-74527038(-)$1	1	137	161	21.4128
(((((((............)))))	chr15:34382488-34382725(-)$1	1	17	41	24.2582
(((((((...........))))))	chr9:124072861-124073076(+)$1	1	6	30	23.0247
((((((((...........)))))	chr6:31962269-31962493(+)$1	1	129	153	22.6912
(((((((............)))))	chr19:45412292-45412506(+)$1	1	115	139	22.5861
(..((((............)))).	chr9:136232760-136232969(-)$1	1	28	52	23.7776
(((((((...........))))))	chr11:75282770-75283056(+)$1	1	90	114	23.0247
(..(((((...........)))))	chr1:21546495-21546725(-)$1	1	17	41	22.6173
.(((((..............))))	chr6:7298879-7299116(-)$1	1	134	158	21.7409
)).((((............)))).	chr3:186338586-186338809(+)$1	1	157	181	21.1354
))))((((...........)))).	chr14:70489839-70490088(+)$1	1	139	163	20.8017
((((.((............)).))	chr4:79436879-79437119(+)$1	1	180	204	23.4737
.((((((................)	chr22:39222404-39222784(-)$1	1	182	206	20.8152
.((((((............)))))	chr15:81224172-81224416(+)$1	1	4	28	21.8483
((..((((...........)))).	chr17:79803507-79803718(-)$1	1	175	199	22.3330
..(((((............)))))	chrX:115584091-115584347(+)$1	1	52	76	23.6354
(((((((............)))))	chr11:75277810-75278063(+)$1	1	227	251	24.2582
..(((((...........))))).	chr4:155529517-155529719(-)$1	1	112	136	22.8681
((.((((.............))))	chrX:48321244-48321465(-)$1	1	161	185	22.2096
(...(((..............)))	chr16:88712447-88712672(-)$1	1	173	197	21.8644
(((((((.............))))	chr4:39448426-39448696(+)$1	1	26	50	21.7202
))(((((............)))))	chr13:30091681-30091919(-)$1	1	157	181	23.4386
..(((((............))).)	chr11:118967647-118967873(-)$1	1	46	70	22.0194
(((((((...........))))))	chr6:26217159-26217397(+)$1	1	5	29	23.0247
.(((.((...........)).)))	chr9:116823261-116823470(-)$1	1	72	96	22.4320
((((((.............)))))	chr7:99564577-99564844(-)$1	1	137	161	21.7448
(((((((.............))))	chr1:180158586-180158843(+)$1	1	168	192	21.7202
(((((((............)))))	chr19:3206273-3206525(+)$1	1	215	239	24.2118
((..(((................)	chr1:19549829-19550083(-)$1	1	17	41	21.3904

#PSSM
g : 0.21	[ : 0.14	d : 0.08	c : 0.08	! : 0.07	f : 0.05	: : 0.05	b : 0.05	i : 0.05	e : 0.03	" : 0.03	h : 0.03	# : 0.01	' : 0.01	= : 0.01	& : 0.01	
g : 0.19	c : 0.14	f : 0.10	! : 0.10	d : 0.08	e : 0.08	" : 0.05	i : 0.05	h : 0.03	: : 0.01	[ : 0.01	# : 0.01	' : 0.01	= : 0.01	b : 0.01	& : 0.01	
g : 0.19	e : 0.16	f : 0.10	c : 0.10	! : 0.08	d : 0.07	i : 0.05	" : 0.03	[ : 0.03	h : 0.03	a : 0.01	# : 0.01	' : 0.01	= : 0.01	: : 0.01	b : 0.01	
e : 0.17	g : 0.17	d : 0.14	c : 0.12	f : 0.10	! : 0.05	i : 0.05	[ : 0.03	h : 0.03	# : 0.01	' : 0.01	= : 0.01	" : 0.01	b : 0.01	
d : 0.19	e : 0.16	g : 0.16	c : 0.14	f : 0.10	[ : 0.08	i : 0.05	! : 0.03	h : 0.03	= : 0.01	
d : 0.17	e : 0.16	g : 0.16	b : 0.12	c : 0.12	f : 0.07	[ : 0.05	i : 0.05	h : 0.03	! : 0.01	= : 0.01	
d : 0.17	g : 0.16	b : 0.14	e : 0.10	c : 0.10	a : 0.05	i : 0.05	w : 0.05	f : 0.05	v : 0.03	h : 0.03	= : 0.01	
u : 0.37	t : 0.17	w : 0.12	v : 0.10	d : 0.07	y : 0.05	i : 0.03	a : 0.01	b : 0.01	e : 0.01	
u : 0.37	t : 0.33	w : 0.12	v : 0.10	y : 0.05	
u : 0.37	t : 0.33	w : 0.12	v : 0.10	y : 0.05	
u : 0.37	t : 0.33	w : 0.12	v : 0.10	y : 0.05	
u : 0.37	t : 0.33	w : 0.12	v : 0.10	y : 0.05	
u : 0.37	t : 0.33	w : 0.12	v : 0.10	y : 0.05	
u : 0.37	t : 0.33	w : 0.12	v : 0.10	y : 0.05	
u : 0.37	t : 0.33	w : 0.12	v : 0.10	y : 0.05	
u : 0.37	t : 0.33	w : 0.12	v : 0.10	y : 0.05	
u : 0.37	t : 0.33	w : 0.12	v : 0.10	y : 0.05	
u : 0.37	t : 0.33	w : 0.12	v : 0.10	y : 0.05	
u : 0.37	t : 0.16	w : 0.12	v : 0.10	g : 0.07	y : 0.05	e : 0.03	b : 0.03	a : 0.01	d : 0.01	
g : 0.16	d : 0.14	w : 0.12	e : 0.12	b : 0.08	c : 0.07	v : 0.07	y : 0.05	i : 0.05	f : 0.05	2 : 0.01	a : 0.01	= : 0.01	
d : 0.16	e : 0.16	g : 0.16	c : 0.08	w : 0.07	b : 0.07	] : 0.05	y : 0.05	i : 0.05	f : 0.05	h : 0.03	2 : 0.01	= : 0.01	
d : 0.19	e : 0.16	g : 0.16	c : 0.14	y : 0.05	i : 0.05	f : 0.05	a : 0.03	b : 0.03	h : 0.03	2 : 0.01	= : 0.01	3 : 0.01	] : 0.01	
d : 0.17	g : 0.17	e : 0.16	] : 0.12	c : 0.07	y : 0.05	i : 0.05	f : 0.05	3 : 0.03	h : 0.03	b : 0.01	2 : 0.01	= : 0.01	
g : 0.17	e : 0.12	f : 0.10	d : 0.08	c : 0.08	] : 0.07	2 : 0.05	3 : 0.05	b : 0.05	i : 0.05	= : 0.03	: : 0.03	h : 0.03	a : 0.01	

#score	1261.6248071479956
#seq	56
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_CDS_m2_run2.txt

#BEAR
d[ccc!!cccccclllccc]ccc666666ccc]dddd]dd	chr8:48650427-48650635(-)$1	208	59	99	23.7049
dffffffeeeeemmmmeeeee88888888ffffff]dddd	chr1:109289280-109289510(+)$1	230	5	45	22.3352
h!!bb!!ddddmmmmdddd22bb88888888hhhhhhhh:	chr7:151845069-151845315(-)$1	246	69	109	21.0191
b[ccc"""eeeeellleeeee55555ccc]bb]dddd]bb	chr19:8550833-8551095(+)$1	262	155	195	21.9709

#otherMatches

#Seq PSSM
GGGCCGAGCCAGGGGCCCUAGGCGAGCCAGGCGCCGCCGC	chr8:48650427-48650635(-)$1	208	59	99	23.7049
CCCCAACGCCGCUUCUGCGGCCAAAGUAGGUUGGGAGUGG	chr1:109289280-109289510(+)$1	230	5	45	22.3352
CUCGCUAUGCCAAUAGGCGCUGCCGCUACCUGUGCUCCAU	chr7:151845069-151845315(-)$1	246	69	109	21.0191
CGCCAACAAUCUGGAGCGGAUGGGCCUGGAGCGCAUGGGC	chr19:8550833-8551095(+)$1	262	155	195	21.9709

#DB
(.(((..((((((...))).)))......))).)))).))	chr8:48650427-48650635(-)$1	1	59	99	23.7049
((((((((((((....)))))........)))))).))))	chr1:109289280-109289510(+)$1	1	5	45	22.3352
(..((..((((....))))..))........)))))))).	chr7:151845069-151845315(-)$1	1	69	109	21.0191
(.(((...(((((...))))).....))).)).)))).))	chr19:8550833-8551095(+)$1	1	155	195	21.9709

#PSSM
d : 0.50	h : 0.25	b : 0.25	
[ : 0.50	f : 0.25	! : 0.25	
c : 0.50	f : 0.25	! : 0.25	
c : 0.50	f : 0.25	b : 0.25	
c : 0.50	f : 0.25	b : 0.25	
! : 0.50	f : 0.25	" : 0.25	
! : 0.50	f : 0.25	" : 0.25	
c : 0.25	e : 0.25	d : 0.25	" : 0.25	
e : 0.50	c : 0.25	d : 0.25	
e : 0.50	c : 0.25	d : 0.25	
e : 0.50	c : 0.25	d : 0.25	
e : 0.50	c : 0.25	m : 0.25	
m : 0.50	c : 0.25	e : 0.25	
l : 0.50	m : 0.50	
l : 0.50	m : 0.50	
l : 0.50	m : 0.25	d : 0.25	
e : 0.50	c : 0.25	d : 0.25	
e : 0.50	c : 0.25	d : 0.25	
e : 0.50	c : 0.25	d : 0.25	
e : 0.50	] : 0.25	2 : 0.25	
e : 0.50	c : 0.25	2 : 0.25	
c : 0.25	8 : 0.25	b : 0.25	5 : 0.25	
c : 0.25	8 : 0.25	b : 0.25	5 : 0.25	
8 : 0.50	6 : 0.25	5 : 0.25	
8 : 0.50	6 : 0.25	5 : 0.25	
8 : 0.50	6 : 0.25	5 : 0.25	
8 : 0.50	6 : 0.25	c : 0.25	
8 : 0.50	6 : 0.25	c : 0.25	
8 : 0.50	6 : 0.25	c : 0.25	
c : 0.25	f : 0.25	8 : 0.25	] : 0.25	
c : 0.25	f : 0.25	8 : 0.25	b : 0.25	
c : 0.25	f : 0.25	h : 0.25	b : 0.25	
] : 0.50	f : 0.25	h : 0.25	
d : 0.50	f : 0.25	h : 0.25	
d : 0.50	f : 0.25	h : 0.25	
d : 0.50	] : 0.25	h : 0.25	
d : 0.75	h : 0.25	
] : 0.50	d : 0.25	h : 0.25	
d : 0.50	h : 0.25	b : 0.25	
d : 0.50	: : 0.25	b : 0.25	

#score	89.03023756090002
#seq	4
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_UTR_m3_run1.txt

#BEAR
eeeeennnnneeee	chr6:27806730-27806944(+)$1	214	17	31	8.4798
eeeeemmmmeeeee	chr1:149857670-149857939(-)$1	269	130	144	10.4093
eeeeemmmmeeeee	chr6:26123595-26123800(-)$1	205	1	15	10.4093
[ddddmmmmdddd2	chr6:26216376-26216595(-)$1	219	33	47	6.2735
ddddammmma]ddd	chr6:25727464-25727672(+)$1	208	17	31	6.1431
eeeeemmmmeeeee	chr6:27861562-27861766(+)$1	204	166	180	10.4093
eeeeennnnneeee	chr6:26124779-26125000(+)$1	221	26	40	8.4798
eeeeemmmmeeeee	chr1:22054283-22054610(-)$1	327	91	105	10.4093
eeeeemmmmeeeee	chr6:27834471-27834760(-)$1	289	235	249	10.4093
eeeeemmmmeeeee	chr6:26285248-26285477(-)$1	229	175	189	10.4093
eeeeemmmmeeeee	chr6:27776274-27776518(+)$1	244	168	182	10.4093
eeeeemmmmeeeee	chr6:27792118-27792355(+)$1	237	213	227	10.4093
[ddddmmmmdddd2	chr6:26216372-26216576(-)$1	204	14	28	6.2735
eeeeeooooooeee	chr1:149783661-149783992(-)$1	331	281	295	8.2650
eeeeemmmmeeeee	chr6:27806772-27806986(+)$1	214	0	14	10.4093
eeeeeooooooeee	chr6:27107322-27107555(+)$1	233	135	149	8.2650
[eeeeellleeeee	chr6:26020995-26021279(+)$1	284	16	30	8.3626
[ddddmmmmddddc	chr6:26205091-26205348(+)$1	257	192	206	6.3678
eeeeennnnneeee	chr6:26217459-26217694(+)$1	235	131	145	8.4798
eeeeennnnneeee	chr12:7052906-7053139(+)$1	233	88	102	8.4798
eeeeellleeeeeG	chr6:26043355-26043591(-)$1	236	137	151	7.6207
eeeeemmmmeeeee	chr6:26285277-26285486(-)$1	209	184	198	10.4093
eeeeemmmmeeeee	chr11:118965970-118966233(-)$1	263	72	86	10.4093
eeeeellleeeee]	chr6:27857994-27858239(-)$1	245	8	22	8.2689
eeeeemmmmeeeee	chr6:27860378-27860621(-)$1	243	9	23	10.4093
eeeeemmmmeeeee	chr6:25726191-25726442(-)$1	251	172	186	10.4093
eeeeemmmmeeeee	chr6:26027025-26027257(-)$1	232	169	183	10.4093
eeeeeooooooeee	chr6:26250269-26250527(-)$1	258	200	214	8.2650
!ddddmmmmdddd3	chr6:26022126-26022351(+)$1	225	46	60	6.4259
ddddammmma]ddd	chr6:25727431-25727664(+)$1	233	50	64	6.1431
!ddddmmmmdddd3	chr6:26022151-26022377(+)$1	226	21	35	6.4259
eeeeennnnneeee	chr6:27833422-27833675(+)$1	253	93	107	8.4798
eeebbmmmmbb]ee	chr1:228646099-228646358(+)$1	259	242	256	6.5838
eeeeennnnneeee	chr6:26285310-26285531(-)$1	221	84	98	8.4798
[eeeeellleeeee	chr6:26204764-26205046(+)$1	282	149	163	8.3626
eeeeemmmmeeeee	chr1:149783334-149783576(-)$1	242	31	45	10.4093
eeeeemmmmeeeee	chr6:27860421-27860671(-)$1	250	59	73	10.4093
eeeeemmmmeeeee	chr6:27861507-27861762(+)$1	255	66	80	10.4093
[ddddmmmmdddd]	chr1:149858918-149859185(-)$1	267	15	29	6.4699
eeeeemmmmeeeee	chr1:149813687-149813993(-)$1	306	132	146	10.4093
eeeeemmmmeeeee	chr6:26055868-26056072(-)$1	204	17	31	10.4093
eeeeennnnneeee	chr6:27806700-27806930(+)$1	230	47	61	8.4798
eeeee4444eeeee	chr6:26197341-26197588(-)$1	247	195	209	7.8116
eeeeemmmmeeeee	chr6:26200100-26200304(+)$1	204	122	136	10.4093
eeeeemmmmeeeee	chr6:26252152-26252401(+)$1	249	108	122	10.4093
eeeeemmmmeeeee	chr6:26055910-26056117(-)$1	207	100	114	10.4093
eeeeeooooooeee	chr6:27107355-27107598(+)$1	243	102	116	8.2650
eeeeemmmmeeeee	chr9:130575934-130576192(+)$1	258	57	71	10.4093
eeeeemmmmeeeee	chr6:26055872-26056103(-)$1	231	86	100	10.4093
eeeeennnnneeee	chr6:26217501-26217742(+)$1	241	89	103	8.4798
eeeeennnnneeee	chr6:26217494-26217701(+)$1	207	96	110	8.4798
eeeeemmmmeeeee	chr6:26124750-26124979(+)$1	229	194	208	10.4093
eeeeemmmmeeeee	chr11:118965445-118965677(-)$1	232	92	106	10.4093

#otherMatches

#Seq PSSM
GCCAGGGGAGCUGG	chr6:27806730-27806944(+)$1	214	17	31	8.4798
GUCCCUGCCGGGAC	chr1:149857670-149857939(-)$1	269	130	144	10.4093
GUGUCGGAGGGCAC	chr6:26123595-26123800(-)$1	205	1	15	10.4093
CCCGGAGAGCUGGC	chr6:26216376-26216595(-)$1	219	33	47	6.2735
GGCACCAAGGCUGU	chr6:25727464-25727672(+)$1	208	17	31	6.1431
CCUCCAUUAGGAGG	chr6:27861562-27861766(+)$1	204	166	180	10.4093
CUUCUGCCUAAGAA	chr6:26124779-26125000(+)$1	221	26	40	8.4798
UCAGGUUUACCUGA	chr1:22054283-22054610(-)$1	327	91	105	10.4093
GCAAGAUUCCUUGC	chr6:27834471-27834760(-)$1	289	235	249	10.4093
UUGCUGAGAAGUAG	chr6:26285248-26285477(-)$1	229	175	189	10.4093
CUACAAUUUUGUGG	chr6:27776274-27776518(+)$1	244	168	182	10.4093
GUUCUGGGGGGAAC	chr6:27792118-27792355(+)$1	237	213	227	10.4093
CCCGGAGAGCUGGC	chr6:26216372-26216576(-)$1	204	14	28	6.2735
GUCCAAGGCCAUGG	chr1:149783661-149783992(-)$1	331	281	295	8.2650
GUGUCGGAGGGCAC	chr6:27806772-27806986(+)$1	214	0	14	10.4093
UCAACAAAAGAGUU	chr6:27107322-27107555(+)$1	233	135	149	8.2650
GCCUACUUGGUAGG	chr6:26020995-26021279(+)$1	284	16	30	8.3626
CGAUUGGUUGGUCU	chr6:26205091-26205348(+)$1	257	192	206	6.3678
AGUGAAAUGAUUAC	chr6:26217459-26217694(+)$1	235	131	145	8.4798
uuagaauuugucua	chr12:7052906-7053139(+)$1	233	88	102	8.4798
CUUUGUCACAAGGA	chr6:26043355-26043591(-)$1	236	137	151	7.6207
UUGCUGAGAAGUAG	chr6:26285277-26285486(-)$1	209	184	198	10.4093
GGCGGGCGUCUGUU	chr11:118965970-118966233(-)$1	263	72	86	10.4093
CACGCCAAGCGUGU	chr6:27857994-27858239(-)$1	245	8	22	8.2689
GGCGGUGUUCUGCC	chr6:27860378-27860621(-)$1	243	9	23	10.4093
ACGUUACAAAACGU	chr6:25726191-25726442(-)$1	251	172	186	10.4093
GGAUGGUAACAUCU	chr6:26027025-26027257(-)$1	232	169	183	10.4093
CUCCUAAAACAAGG	chr6:26250269-26250527(-)$1	258	200	214	8.2650
CGCGCUUAAGCGCC	chr6:26022126-26022351(+)$1	225	46	60	6.4259
GGCACCAAGGCUGU	chr6:25727431-25727664(+)$1	233	50	64	6.1431
CGCGCUUAAGCGCC	chr6:26022151-26022377(+)$1	226	21	35	6.4259
AGGCAAAUAAUGUC	chr6:27833422-27833675(+)$1	253	93	107	8.4798
GGCCGAAUCUGAGC	chr1:228646099-228646358(+)$1	259	242	256	6.5838
AGGGACGCACUCUU	chr6:26285310-26285531(-)$1	221	84	98	8.4798
AGGCGCUAAGCGUC	chr6:26204764-26205046(+)$1	282	149	163	8.3626
GUGUCCGAGGGCAC	chr1:149783334-149783576(-)$1	242	31	45	10.4093
GGCGGUGUUCUGCC	chr6:27860421-27860671(-)$1	250	59	73	10.4093
GUGUCCGAGGGCAC	chr6:27861507-27861762(+)$1	255	66	80	10.4093
GGGUGUCACCAUUG	chr1:149858918-149859185(-)$1	267	15	29	6.4699
GGCCCAAGUGGGCC	chr1:149813687-149813993(-)$1	306	132	146	10.4093
AGGUUGUCAAGCCU	chr6:26055868-26056072(-)$1	204	17	31	10.4093
GCCAGGGGAGCUGG	chr6:27806700-27806930(+)$1	230	47	61	8.4798
GCGCUCCAGCCACC	chr6:26197341-26197588(-)$1	247	195	209	7.8116
CAGCUAUAGAGUUG	chr6:26200100-26200304(+)$1	204	122	136	10.4093
UGGACGCAUGUUCA	chr6:26252152-26252401(+)$1	249	108	122	10.4093
UAGGCGAACGCCUA	chr6:26055910-26056117(-)$1	207	100	114	10.4093
UCAACAAAAGAGUU	chr6:27107355-27107598(+)$1	243	102	116	8.2650
UGGCCUAGGGGCCA	chr9:130575934-130576192(+)$1	258	57	71	10.4093
UAGGCGAACGCCUA	chr6:26055872-26056103(-)$1	231	86	100	10.4093
AGUGAAAUGAUUAC	chr6:26217501-26217742(+)$1	241	89	103	8.4798
AGUGAAAUGAUUAC	chr6:26217494-26217701(+)$1	207	96	110	8.4798
CUGCUUGUAGGUAG	chr6:26124750-26124979(+)$1	229	194	208	10.4093
CUGAGCCGCUUCAG	chr11:118965445-118965677(-)$1	232	92	106	10.4093

#DB
(((((.....))))	chr6:27806730-27806944(+)$1	1	17	31	8.4798
(((((....)))))	chr1:149857670-149857939(-)$1	1	130	144	10.4093
(((((....)))))	chr6:26123595-26123800(-)$1	1	1	15	10.4093
.((((....)))).	chr6:26216376-26216595(-)$1	1	33	47	6.2735
(((((....).)))	chr6:25727464-25727672(+)$1	1	17	31	6.1431
(((((....)))))	chr6:27861562-27861766(+)$1	1	166	180	10.4093
(((((.....))))	chr6:26124779-26125000(+)$1	1	26	40	8.4798
(((((....)))))	chr1:22054283-22054610(-)$1	1	91	105	10.4093
(((((....)))))	chr6:27834471-27834760(-)$1	1	235	249	10.4093
(((((....)))))	chr6:26285248-26285477(-)$1	1	175	189	10.4093
(((((....)))))	chr6:27776274-27776518(+)$1	1	168	182	10.4093
(((((....)))))	chr6:27792118-27792355(+)$1	1	213	227	10.4093
.((((....)))).	chr6:26216372-26216576(-)$1	1	14	28	6.2735
(((((......)))	chr1:149783661-149783992(-)$1	1	281	295	8.2650
(((((....)))))	chr6:27806772-27806986(+)$1	1	0	14	10.4093
(((((......)))	chr6:27107322-27107555(+)$1	1	135	149	8.2650
.(((((...)))))	chr6:26020995-26021279(+)$1	1	16	30	8.3626
.((((....)))))	chr6:26205091-26205348(+)$1	1	192	206	6.3678
(((((.....))))	chr6:26217459-26217694(+)$1	1	131	145	8.4798
(((((.....))))	chr12:7052906-7053139(+)$1	1	88	102	8.4798
(((((...))))))	chr6:26043355-26043591(-)$1	1	137	151	7.6207
(((((....)))))	chr6:26285277-26285486(-)$1	1	184	198	10.4093
(((((....)))))	chr11:118965970-118966233(-)$1	1	72	86	10.4093
(((((...))))).	chr6:27857994-27858239(-)$1	1	8	22	8.2689
(((((....)))))	chr6:27860378-27860621(-)$1	1	9	23	10.4093
(((((....)))))	chr6:25726191-25726442(-)$1	1	172	186	10.4093
(((((....)))))	chr6:26027025-26027257(-)$1	1	169	183	10.4093
(((((......)))	chr6:26250269-26250527(-)$1	1	200	214	8.2650
.((((....)))).	chr6:26022126-26022351(+)$1	1	46	60	6.4259
(((((....).)))	chr6:25727431-25727664(+)$1	1	50	64	6.1431
.((((....)))).	chr6:26022151-26022377(+)$1	1	21	35	6.4259
(((((.....))))	chr6:27833422-27833675(+)$1	1	93	107	8.4798
(((((....)).))	chr1:228646099-228646358(+)$1	1	242	256	6.5838
(((((.....))))	chr6:26285310-26285531(-)$1	1	84	98	8.4798
.(((((...)))))	chr6:26204764-26205046(+)$1	1	149	163	8.3626
(((((....)))))	chr1:149783334-149783576(-)$1	1	31	45	10.4093
(((((....)))))	chr6:27860421-27860671(-)$1	1	59	73	10.4093
(((((....)))))	chr6:27861507-27861762(+)$1	1	66	80	10.4093
.((((....)))).	chr1:149858918-149859185(-)$1	1	15	29	6.4699
(((((....)))))	chr1:149813687-149813993(-)$1	1	132	146	10.4093
(((((....)))))	chr6:26055868-26056072(-)$1	1	17	31	10.4093
(((((.....))))	chr6:27806700-27806930(+)$1	1	47	61	8.4798
)))))....)))))	chr6:26197341-26197588(-)$1	1	195	209	7.8116
(((((....)))))	chr6:26200100-26200304(+)$1	1	122	136	10.4093
(((((....)))))	chr6:26252152-26252401(+)$1	1	108	122	10.4093
(((((....)))))	chr6:26055910-26056117(-)$1	1	100	114	10.4093
(((((......)))	chr6:27107355-27107598(+)$1	1	102	116	8.2650
(((((....)))))	chr9:130575934-130576192(+)$1	1	57	71	10.4093
(((((....)))))	chr6:26055872-26056103(-)$1	1	86	100	10.4093
(((((.....))))	chr6:26217501-26217742(+)$1	1	89	103	8.4798
(((((.....))))	chr6:26217494-26217701(+)$1	1	96	110	8.4798
(((((....)))))	chr6:26124750-26124979(+)$1	1	194	208	10.4093
(((((....)))))	chr11:118965445-118965677(-)$1	1	92	106	10.4093

#PSSM
e : 0.81	[ : 0.11	d : 0.03	! : 0.03	
e : 0.84	d : 0.15	
e : 0.84	d : 0.15	
e : 0.83	d : 0.15	b : 0.01	
e : 0.83	d : 0.11	a : 0.03	b : 0.01	
m : 0.66	n : 0.16	o : 0.07	e : 0.03	l : 0.03	4 : 0.01	
m : 0.66	n : 0.16	o : 0.07	l : 0.07	4 : 0.01	
m : 0.66	n : 0.16	o : 0.07	l : 0.07	4 : 0.01	
m : 0.66	n : 0.16	o : 0.07	l : 0.03	e : 0.03	4 : 0.01	
e : 0.58	n : 0.16	d : 0.11	o : 0.07	a : 0.03	b : 0.01	
e : 0.75	d : 0.11	o : 0.07	] : 0.03	b : 0.01	
e : 0.83	d : 0.15	] : 0.01	
e : 0.84	d : 0.15	
e : 0.81	2 : 0.03	d : 0.03	] : 0.03	3 : 0.03	c : 0.01	G : 0.01	

#score	477.5570019574116
#seq	53
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_transcript_m3_run2.txt

#BEAR
ee!!ddddmmmmddddeeeee	chr20:60737650-60737930(+)$1	280	248	269	12.9552
gg!!ddddmmmmdddd22ggg	chr1:1328087-1328309(-)$1	222	169	190	13.6890
fff:ddddmmmmddddggggg	chr19:11558889-11559155(+)$1	266	92	113	10.8035
ggggddddllldddd333ggg	chr2:234197291-234197509(+)$1	218	12	33	10.8609
eeeeddddmmmmdddd>>>>>	chr2:21252577-21252798(-)$1	221	101	122	11.7701
ddd[ddddmmmmddddddddc	chr20:34082173-34082456(+)$1	283	111	132	12.3374
:bb[ddddmmmmdddd]bbgg	chr17:4788618-4788878(+)$1	260	213	234	11.4313
d"""ddddmmmmdddd]dddd	chr11:62609112-62609322(-)$1	210	160	181	13.2531
ee!!ddddmmmmdddd22eee	chr6:43745758-43745993(+)$1	235	20	41	13.8958
!!a[ddddmmmmdddda22cc	chr14:104198751-104199057(+)$1	306	192	213	13.2208
d"""ddddmmmmdddddddd:	chr3:58519149-58519414(-)$1	265	238	259	11.7990
[bb[ddddmmmmddddbb]bb	chr17:80203904-80204168(-)$1	264	159	180	11.3264
ccc[ddddllldddd333ccc	chr19:41773970-41774220(+)$1	250	5	26	11.6403
""ddddoooooodddd333dd	chr17:7080596-7080828(-)$1	232	53	74	9.8755
ddd[ddddmmmmdddd]dddd	chr9:37429580-37429835(+)$1	255	182	203	12.9898
ccc!!ddddllldddd22ccc	chr21:47558717-47559016(-)$1	299	222	243	11.9968
ccc[ddddmmmmddddccc>>	chr5:140021742-140022004(+)$1	262	142	163	12.5512
dd!!ddddmmmmdddddddd2	chr1:1235483-1235731(-)$1	248	12	33	12.4800
eeee[ddddllldddd22eee	chr1:985456-985715(+)$1	259	165	186	11.2265
cc!!ddddmmmmdddd]cccI	chr4:3447619-3447877(+)$1	258	182	203	12.4533
ddd[ddddmmmmddddddddG	chr3:128526189-128526501(+)$1	312	139	160	11.8305
===[ddddmmmmdddd=====	chr17:19459191-19459415(+)$1	224	132	153	13.1543
eeee[ddddlllddddeeeee	chr1:43395620-43395848(-)$1	228	1	22	10.2858
eeeeddddllldddd333eee	chr11:62565991-62566210(-)$1	219	2	23	10.9056
cc!!ddddmmmmdddd4444c	chr9:130705398-130705666(-)$1	268	70	91	13.8904
ee!!ddddmmmmdddd4444e	chr9:137020308-137020560(+)$1	252	209	230	13.9716
[ddddddddllldddd]dddd	chr10:6155318-6155560(+)$1	242	137	158	11.0599
d"""ddddmmmmdddd4444d	chr16:3729732-3729974(-)$1	242	175	196	13.7147
eee[ddddmmmmdddd]eeee	chr14:23416861-23417143(-)$1	282	63	84	13.3113
cc"""ddddllldddd333cc	chr9:139730048-139730323(+)$1	275	104	125	12.3413
e[a[ddddmmmmdddd]a]ee	chr1:145440480-145440742(+)$1	262	107	128	13.5694
#bb[ddddmmmmddddbb333	chr8:30416248-30416498(+)$1	250	90	111	11.9406
""cccddddllldddd]ccc2	chr19:42402425-42402694(+)$1	269	23	44	10.9966
[ccc[ddddllldddd]ccc]	chr20:402645-402906(+)$1	261	202	223	11.2045
!ccc[ddddllldddd]ccc]	chr22:46685583-46685820(+)$1	237	128	149	11.2095
ggg!!ddddllldddd22ggg	chr4:1805917-1806160(+)$1	243	56	77	11.7484
ccc[ddddmmmmdddd]ccc:	chr11:93454833-93455050(+)$1	217	89	110	12.7097
ee"""ddddlllddddeeeee	chr6:167356478-167356721(-)$1	243	74	95	11.0281
f"""ddddmmmmdddd]ffff	chr17:39977066-39977302(+)$1	236	149	170	12.8233
ccc[ddddmmmmdddd]cccd	chr13:113508430-113508728(+)$1	298	205	226	13.4808
ee!!ddddmmmmdddd333ee	chr19:1417341-1417594(+)$1	253	168	189	14.3259
ccc[ddddmmmmdddd]ccc3	chr11:62609081-62609293(-)$1	212	18	39	13.5609
eee[ddddmmmmddddeeeee	chr3:50137801-50138071(+)$1	270	163	184	12.6931
[bb[ddddmmmmdddd]bb]e	chr12:46751965-46752209(-)$1	244	89	110	12.4925
bb!!ddddmmmmdddd22bb6	chr2:11760829-11761144(+)$1	315	10	31	12.2794
eeeeecccmmmmccc333eee	chr14:24634912-24635202(+)$1	290	15	36	8.8268
ddddddddmmmmdddd4444d	chr17:27075378-27075640(+)$1	262	128	149	12.7163
[cccddddmmmmdddd22ccc	chr2:75099284-75099524(+)$1	240	149	170	13.1853
eeeeddddmmmmdddd22eee	chr17:80442527-80442801(+)$1	274	147	168	12.9860

#otherMatches

#Seq PSSM
ACCCGCCUCGCAGGGCGUCCC	chr20:60737650-60737930(+)$1	280	248	269	12.9552
CCAAGCGCUUUGGUGCAGGGA	chr1:1328087-1328309(-)$1	222	169	190	13.6890
CCCCAUCCUCCUGGAUGGGGU	chr19:11558889-11559155(+)$1	266	92	113	10.8035
GAUCAUGCACUGCAUAGAGGU	chr2:234197291-234197509(+)$1	218	12	33	10.8609
CUGCACCCUGAUGGGUUCUUG	chr2:21252577-21252798(-)$1	221	101	122	11.7701
GUGAGGAGCAUCUUCCCACCG	chr20:34082173-34082456(+)$1	283	111	132	12.3374
UCAUUGGGACUCCCUACUGGA	chr17:4788618-4788878(+)$1	260	213	234	11.4313
aauaggagcuugcuccgucca	chr11:62609112-62609322(-)$1	210	160	181	13.2531
GUUACCUGGUAAUGGGGCACA	chr6:43745758-43745993(+)$1	235	20	41	13.8958
CUCUCUCCUCCAGGAGGCAAC	chr14:104198751-104199057(+)$1	306	192	213	13.2208
AGACUGUGAGUAUACAUCCAC	chr3:58519149-58519414(-)$1	265	238	259	11.7990
UUGAGGCAAGGAUGCCCAUCU	chr17:80203904-80204168(-)$1	264	159	180	11.3264
uggaguauaguaugcaugcca	chr19:41773970-41774220(+)$1	250	5	26	11.6403
CCGCAUUUCUUCAUGUACAUG	chr17:7080596-7080828(-)$1	232	53	74	9.8755
UGUCCAGAGAUUUCUGUACAC	chr9:37429580-37429835(+)$1	255	182	203	12.9898
GGUGAGCCUGGAGGGCCGGCC	chr21:47558717-47559016(-)$1	299	222	243	11.9968
GUUGCCUGUUCUCAGGAGCUG	chr5:140021742-140022004(+)$1	262	142	163	12.5512
CUGGCCCAGAGCUGGGAGCUG	chr1:1235483-1235731(-)$1	248	12	33	12.4800
AGGACGGCUCUGGGCCCUUCC	chr1:985456-985715(+)$1	259	165	186	11.2265
UCCUGGCGACCCUGCCUGAGC	chr4:3447619-3447877(+)$1	258	182	203	12.4533
GAGUCAGUGCUGGCUGCUUCU	chr3:128526189-128526501(+)$1	312	139	160	11.8305
GGAGCUGGGCGCUCAGUCCAU	chr17:19459191-19459415(+)$1	224	132	153	13.1543
gCUCAUGCUAGUGGCAGAGCC	chr1:43395620-43395848(-)$1	228	1	22	10.2858
GGGAGUGGGGGCCAUUUUUCC	chr11:62565991-62566210(-)$1	219	2	23	10.9056
ACCUCCAGAGGCCUGGUCCAG	chr9:130705398-130705666(-)$1	268	70	91	13.8904
CCCCAUGGUGCACCAUCCCUG	chr9:137020308-137020560(+)$1	252	209	230	13.9716
UAUGUUUUGAUACAGAUGCAU	chr10:6155318-6155560(+)$1	242	137	158	11.0599
CUCCUCAGGAUACUGGUAUCG	chr16:3729732-3729974(-)$1	242	175	196	13.7147
CCAGGUUUAUCAGGGCAUGGG	chr14:23416861-23417143(-)$1	282	63	84	13.3113
GGAAGGAGCCCUGCUCAGGCC	chr9:139730048-139730323(+)$1	275	104	125	12.3413
UUCUCCAGACCUCUGGUGUAA	chr1:145440480-145440742(+)$1	262	107	128	13.5694
CCCUCCGUGAGAAUGGGGAUA	chr8:30416248-30416498(+)$1	250	90	111	11.9406
UCUAGAGACCUGGUCUGCUGC	chr19:42402425-42402694(+)$1	269	23	44	10.9966
GCUCGGGCAAGCUGCUGGAGA	chr20:402645-402906(+)$1	261	202	223	11.2045
UGACAUUUCAGAGAGACGUCU	chr22:46685583-46685820(+)$1	237	128	149	11.2095
CCUGCGGCUCUGGGCCAGGGG	chr4:1805917-1806160(+)$1	243	56	77	11.7484
GGGGGUGCGUAUGUAUGUCUA	chr11:93454833-93455050(+)$1	217	89	110	12.7097
AAUUUACCUUCUAGGUUUUGA	chr6:167356478-167356721(-)$1	243	74	95	11.0281
CCCAGGAGGCGACUCUCGGGG	chr17:39977066-39977302(+)$1	236	149	170	12.8233
GCCGGGAUCAAAGUCUGGGUU	chr13:113508430-113508728(+)$1	298	205	226	13.4808
UGGGCGGUCUUGACUGGAGCA	chr19:1417341-1417594(+)$1	253	168	189	14.3259
ucucggccuuuuggcuaagau	chr11:62609081-62609293(-)$1	212	18	39	13.5609
GUGUAAGCCGUGGUUUCGCCU	chr3:50137801-50138071(+)$1	270	163	184	12.6931
AACUUUGUGUAUAUAGUGUAA	chr12:46751965-46752209(-)$1	244	89	110	12.4925
GCUCGUGGGAGUCCAUUUGUC	chr2:11760829-11761144(+)$1	315	10	31	12.2794
CUUGCAGCUCCUGCUCUGGCA	chr14:24634912-24635202(+)$1	290	15	36	8.8268
CUCUCUACUUCUGUGGCCCCA	chr17:27075378-27075640(+)$1	262	128	149	12.7163
ACCACAUUGCCGAAUGCCUGG	chr2:75099284-75099524(+)$1	240	149	170	13.1853
CUCUGCCUUGUGAGGUUUGGA	chr17:80442527-80442801(+)$1	274	147	168	12.9860

#DB
((..((((....)))))))))	chr20:60737650-60737930(+)$1	1	248	269	12.9552
((..((((....))))..)))	chr1:1328087-1328309(-)$1	1	169	190	13.6890
))).((((....))))(((((	chr19:11558889-11559155(+)$1	1	92	113	10.8035
((((((((...))))...)))	chr2:234197291-234197509(+)$1	1	12	33	10.8609
((((((((....)))).....	chr2:21252577-21252798(-)$1	1	101	122	11.7701
(((.((((....)))))))))	chr20:34082173-34082456(+)$1	1	111	132	12.3374
.((.((((....)))).))((	chr17:4788618-4788878(+)$1	1	213	234	11.4313
(...((((....)))).))))	chr11:62609112-62609322(-)$1	1	160	181	13.2531
((..((((....))))..)))	chr6:43745758-43745993(+)$1	1	20	41	13.8958
..(.((((....)))))..))	chr14:104198751-104199057(+)$1	1	192	213	13.2208
(...((((....)))))))).	chr3:58519149-58519414(-)$1	1	238	259	11.7990
.((.((((....)))))).))	chr17:80203904-80204168(-)$1	1	159	180	11.3264
(((.((((...))))...)))	chr19:41773970-41774220(+)$1	1	5	26	11.6403
..((((......))))...))	chr17:7080596-7080828(-)$1	1	53	74	9.8755
(((.((((....)))).))))	chr9:37429580-37429835(+)$1	1	182	203	12.9898
(((..((((...))))..)))	chr21:47558717-47559016(-)$1	1	222	243	11.9968
(((.((((....)))))))..	chr5:140021742-140022004(+)$1	1	142	163	12.5512
((..((((....)))))))).	chr1:1235483-1235731(-)$1	1	12	33	12.4800
((((.((((...))))..)))	chr1:985456-985715(+)$1	1	165	186	11.2265
((..((((....)))).))))	chr4:3447619-3447877(+)$1	1	182	203	12.4533
(((.((((....)))))))))	chr3:128526189-128526501(+)$1	1	139	160	11.8305
(((.((((....)))))))))	chr17:19459191-19459415(+)$1	1	132	153	13.1543
((((.((((...)))))))))	chr1:43395620-43395848(-)$1	1	1	22	10.2858
((((((((...))))...)))	chr11:62565991-62566210(-)$1	1	2	23	10.9056
((..((((....))))....)	chr9:130705398-130705666(-)$1	1	70	91	13.8904
((..((((....))))....)	chr9:137020308-137020560(+)$1	1	209	230	13.9716
.((((((((...)))).))))	chr10:6155318-6155560(+)$1	1	137	158	11.0599
(...((((....))))....)	chr16:3729732-3729974(-)$1	1	175	196	13.7147
(((.((((....)))).))))	chr14:23416861-23417143(-)$1	1	63	84	13.3113
((...((((...))))...))	chr9:139730048-139730323(+)$1	1	104	125	12.3413
(.(.((((....)))).).))	chr1:145440480-145440742(+)$1	1	107	128	13.5694
.((.((((....))))))...	chr8:30416248-30416498(+)$1	1	90	111	11.9406
..(((((((...)))).))).	chr19:42402425-42402694(+)$1	1	23	44	10.9966
.(((.((((...)))).))).	chr20:402645-402906(+)$1	1	202	223	11.2045
.(((.((((...)))).))).	chr22:46685583-46685820(+)$1	1	128	149	11.2095
(((..((((...))))..)))	chr4:1805917-1806160(+)$1	1	56	77	11.7484
(((.((((....)))).))).	chr11:93454833-93455050(+)$1	1	89	110	12.7097
((...((((...)))))))))	chr6:167356478-167356721(-)$1	1	74	95	11.0281
(...((((....)))).))))	chr17:39977066-39977302(+)$1	1	149	170	12.8233
(((.((((....)))).)))(	chr13:113508430-113508728(+)$1	1	205	226	13.4808
((..((((....))))...))	chr19:1417341-1417594(+)$1	1	168	189	14.3259
(((.((((....)))).))).	chr11:62609081-62609293(-)$1	1	18	39	13.5609
(((.((((....)))))))))	chr3:50137801-50138071(+)$1	1	163	184	12.6931
.((.((((....)))).)).)	chr12:46751965-46752209(-)$1	1	89	110	12.4925
((..((((....))))..)).	chr2:11760829-11761144(+)$1	1	10	31	12.2794
((((((((....)))...)))	chr14:24634912-24635202(+)$1	1	15	36	8.8268
((((((((....))))....)	chr17:27075378-27075640(+)$1	1	128	149	12.7163
.(((((((....))))..)))	chr2:75099284-75099524(+)$1	1	149	170	13.1853
((((((((....))))..)))	chr17:80442527-80442801(+)$1	1	147	168	12.9860

#PSSM
e : 0.28	c : 0.18	d : 0.16	[ : 0.10	g : 0.06	f : 0.04	! : 0.04	" : 0.04	: : 0.02	= : 0.02	# : 0.02	b : 0.02	
e : 0.26	c : 0.24	d : 0.12	" : 0.12	b : 0.10	g : 0.06	f : 0.02	! : 0.02	= : 0.02	[ : 0.02	
c : 0.20	! : 0.18	e : 0.16	d : 0.12	" : 0.12	b : 0.08	g : 0.04	a : 0.04	f : 0.02	= : 0.02	
[ : 0.34	! : 0.22	e : 0.12	" : 0.12	c : 0.08	d : 0.06	: : 0.02	g : 0.02	
d : 0.79	[ : 0.08	! : 0.04	" : 0.04	c : 0.02	e : 0.02	
d : 0.97	c : 0.02	
d : 0.95	o : 0.02	c : 0.02	
d : 0.95	o : 0.02	c : 0.02	
m : 0.71	d : 0.20	l : 0.06	o : 0.02	
m : 0.71	l : 0.26	o : 0.02	
m : 0.71	l : 0.26	o : 0.02	
m : 0.71	l : 0.20	d : 0.06	o : 0.02	
d : 0.97	c : 0.02	
d : 0.97	c : 0.02	
d : 0.97	c : 0.02	
d : 0.91	3 : 0.08	
] : 0.30	2 : 0.16	3 : 0.14	e : 0.08	d : 0.08	4 : 0.08	b : 0.04	g : 0.02	> : 0.02	a : 0.02	c : 0.02	= : 0.02	
2 : 0.18	c : 0.16	3 : 0.14	d : 0.14	e : 0.10	b : 0.08	4 : 0.08	g : 0.02	> : 0.02	= : 0.02	a : 0.02	f : 0.02	
c : 0.22	e : 0.20	d : 0.14	g : 0.08	3 : 0.08	4 : 0.08	b : 0.06	] : 0.04	> : 0.02	2 : 0.02	= : 0.02	f : 0.02	
e : 0.24	c : 0.24	d : 0.16	g : 0.10	4 : 0.08	> : 0.04	b : 0.04	= : 0.02	3 : 0.02	f : 0.02	] : 0.02	
e : 0.28	c : 0.14	d : 0.14	g : 0.10	> : 0.04	: : 0.04	2 : 0.04	3 : 0.04	] : 0.04	b : 0.02	I : 0.02	G : 0.02	= : 0.02	f : 0.02	6 : 0.02	

#score	600.8010868913597
#seq	49
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_CDS_m3_run2.txt

#BEAR
ggg[bb[bbmmmmbb]bb]ggg	chr16:85689999-85690336(+)$1	337	194	216	16.3110
ff[ddddbbmmmmbb]ddddff	chr1:984893-985170(+)$1	277	34	56	13.8586
hhhhhh[bbmmmmbb]hhhhhh	chr22:21800173-21800439(+)$1	266	151	173	15.7051
gggggggbbmmmmbb]gggggg	chr7:45144136-45144441(-)$1	305	209	231	16.2359
gggg"""bbmmmmbb22ggggg	chr1:234744798-234745071(-)$1	273	3	25	16.2360

#otherMatches

#Seq PSSM
CCGAGCUGCAUGGGCUGCGUGG	chr16:85689999-85690336(+)$1	337	194	216	16.3110
UGUCCCUCCUGGUGGCAGGGCG	chr1:984893-985170(+)$1	277	34	56	13.8586
GGGGCUGGCCCUAGCGGGCCCU	chr22:21800173-21800439(+)$1	266	151	173	15.7051
GGUCCGUGCCCUUGCUGCGGGC	chr7:45144136-45144441(-)$1	305	209	231	16.2359
AGCUCAAGCGGGCGCACGGCUG	chr1:234744798-234745071(-)$1	273	3	25	16.2360

#DB
(((.((.((....)).)).)))	chr16:85689999-85690336(+)$1	1	194	216	16.3110
((.((((((....)).))))))	chr1:984893-985170(+)$1	1	34	56	13.8586
((((((.((....)).))))))	chr22:21800173-21800439(+)$1	1	151	173	15.7051
(((((((((....)).))))))	chr7:45144136-45144441(-)$1	1	209	231	16.2359
((((...((....))..)))))	chr1:234744798-234745071(-)$1	1	3	25	16.2360

#PSSM
g : 0.60	f : 0.20	h : 0.20	
g : 0.60	f : 0.20	h : 0.20	
g : 0.60	[ : 0.20	h : 0.20	
g : 0.40	[ : 0.20	d : 0.20	h : 0.20	
b : 0.20	d : 0.20	h : 0.20	g : 0.20	" : 0.20	
b : 0.20	d : 0.20	h : 0.20	g : 0.20	" : 0.20	
[ : 0.40	d : 0.20	g : 0.20	" : 0.20	
b : 1.00	
b : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
b : 1.00	
b : 1.00	
] : 0.80	2 : 0.20	
b : 0.20	d : 0.20	h : 0.20	g : 0.20	2 : 0.20	
g : 0.40	b : 0.20	d : 0.20	h : 0.20	
g : 0.40	] : 0.20	d : 0.20	h : 0.20	
g : 0.60	d : 0.20	h : 0.20	
g : 0.60	f : 0.20	h : 0.20	
g : 0.60	f : 0.20	h : 0.20	

#score	78.34682651134001
#seq	5
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_UTR_m2_run2.txt

#BEAR
ffbbddddyyyyyyyyyyyyyyyydddd]bb	chr10:75542871-75543118(+)$1	247	190	221	20.7290
+ccc[eeeeettttttttttteeeee]ccc]	chr16:28847998-28848237(+)$1	239	69	100	22.0914
[ddddyyyyyyyyyyyyyyyydddd]eeeee	chr19:46030024-46030237(+)$1	213	21	52	21.9188
=========uuuuuuuuuuuu==========	chr6:33384349-33384598(-)$1	249	36	67	25.5611
ddd[ddddvvvvvvvvvvvvvdddd]dddd]	chr19:48886043-48886300(-)$1	257	72	103	24.1083
fccc[cccwwwwwwwwwwwwwwccc333ccc	chr6:31606807-31607052(-)$1	245	25	56	25.4508
[ggggggguuuuuuuuuuuuggggggg]ccc	chr1:38462500-38462739(-)$1	239	6	37	25.0741
iiiiiiiiiuuuuuuuuuuuuiiiiiiiii3	chr9:114695785-114696033(+)$1	248	23	54	24.8115
ee!!dddduuuuuuuuuuuudddd]eeeeeF	chr4:166263198-166263464(+)$1	266	10	41	24.0395
cc[eeeeettttttttttteeeee]cccddd	chr19:49994885-49995099(+)$1	214	153	184	22.4421
"""eeeeevvvvvvvvvvvvveeeee333bb	chr16:31202278-31202509(+)$1	231	155	186	25.1580
%%%eeeeeuuuuuuuuuuuueeeeebb22cc	chr1:54683869-54684096(+)$1	227	145	176	22.1724
d[bb[ddddtttttttttttddddbb]dddd	chr17:80443384-80443632(+)$1	248	78	109	22.0679
eeee[cccwwwwwwwwwwwwwwccceeeeec	chr3:49397492-49397704(-)$1	212	130	161	24.7104
dccc!!bbuuuuuuuuuuuubb22ccc]ddd	chr14:105936668-105936930(+)$1	262	31	62	23.5490
!ffffffwwwwwwwwwwwwwwffffff22ee	chr19:3976133-3976351(-)$1	218	113	144	23.6807
E:eeeeewwwwwwwwwwwwwweeeee:gggg	chr15:69745136-69745376(+)$1	240	162	193	21.3911
c[eeeeewwwwwwwwwwwwwweeeee]ccc]	chr1:205682338-205682597(-)$1	259	218	249	24.4810
ccc!!cccwwwwwwwwwwwwwwccc22ccc]	chr17:35413886-35414142(+)$1	256	69	100	24.9720
::ffffffuuuuuuuuuuuuffffff:dddd	chr17:6917500-6917741(+)$1	241	77	108	20.9766
dddd[ddddtttttttttttdddd]dddd22	chr4:103717777-103718006(-)$1	229	80	111	21.8241
[ffffffxxxxxxxxxxxxxxxfffffffff	chr2:27293472-27293690(-)$1	218	135	166	20.2697
========vvvvvvvvvvvvv==========	chr16:8986860-8987087(-)$1	227	122	153	26.1351
gggggggwwwwwwwwwwwwwwggggggg333	chr1:226548658-226548890(-)$1	232	114	145	24.7291
bb!!dddduuuuuuuuuuuudddd]bb]eee	chr19:13063854-13064074(+)$1	220	60	91	23.8523
fff####ccctttttttttttccc]ffffff	chr19:10225644-10225880(-)$1	236	32	63	22.5071
#ccc[cccvvvvvvvvvvvvvccc]cccddd	chr4:129191230-129191488(-)$1	258	172	203	26.1083
ff[eeeeevvvvvvvvvvvvveeeee22fff	chr16:223569-223797(+)$1	228	11	42	24.5360
!cccddddwwwwwwwwwwwwwwdddd333cc	chrX:64959732-64959972(+)$1	240	179	210	24.5376
"""ddddwwwwwwwwwwwwwwdddd4444cc	chr14:101201160-101201422(+)$1	262	107	138	24.4260
eeggggggguuuuuuuuuuuuggggggg:::	chr16:204345-204566(+)$1	221	13	44	21.5918
[eeeee[ccctttttttttttccc]eeeeeb	chr3:49133291-49133552(-)$1	261	86	117	22.8891
$ffffffyyyyyyyyyyyyyyyyffffffdd	chr15:34522126-34522422(+)$1	296	157	188	22.1739
dddd[cccxxxxxxxxxxxxxxxccc]dddd	chr10:98280692-98280925(-)$1	233	75	106	20.6723
ff[a[cccwwwwwwwwwwwwwwccca]ffff	chr2:136598103-136598397(-)$1	294	234	265	24.8741
iiiiiiiiattttttttttta]iiiiiiiii	chr3:49396891-49397131(-)$1	240	12	43	24.4229
d[bb[cccwwwwwwwwwwwwwwcccbbdddd	chr19:38899448-38899739(+)$1	291	10	41	24.0546
=========uuuuuuuuuuuu==========	chr1:38423594-38423902(-)$1	308	205	236	25.5611
fffffyyyyyyyyyyyyyyyyffffffdddd	chr9:134108814-134109114(+)$1	300	209	240	21.8687
eeee[ddddtttttttttttdddd]eeeeef	chr2:217069810-217070086(+)$1	276	75	106	22.8056
a!!eeeeeuuuuuuuuuuuueeeee22aggg	chr20:39803973-39804223(+)$1	250	50	81	24.4700
iiiifffffftttttttttttffffff]iii	chr19:17389852-17390189(+)$1	337	291	322	21.9593
[gggggggwwwwwwwwwwwwwwggggggg22	chr6:3153855-3154124(-)$1	269	193	224	24.4305
%%%%dddduuuuuuuuuuuudddd22fffff	chr19:59067151-59067361(-)$1	210	50	81	21.5471
:ddddcccvvvvvvvvvvvvvccc]dddd::	chrX:30237890-30238151(+)$1	261	104	135	22.1205
##bb[cccuuuuuuuuuuuuccc]bb333ee	chr19:36142034-36142264(+)$1	230	7	38	24.9653
ee####cccuuuuuuuuuuuuccc22eeeee	chr11:2949617-2949841(-)$1	224	177	208	24.6385
c"""cccwwwwwwwwwwwwwwccc]ccc]gg	chr1:150190774-150191026(-)$1	252	90	121	25.1810
iiii!!ccctttttttttttccc22iiiiii	chr2:62095511-62095755(-)$1	244	14	45	23.9620
ee[eeeeevvvvvvvvvvvvveeeee22eee	chr16:227333-227542(+)$1	209	58	89	24.7139
eeee[cccwwwwwwwwwwwwwwccceeeeec	chr3:49397388-49397637(-)$1	249	63	94	24.7104
[bb[cccwwwwwwwwwwwwwwccc22bbddd	chr6:31637594-31637842(+)$1	248	103	134	23.7783
iiiiiiiiitttttttttttiiiiiiiiibb	chr6:34741378-34741625(+)$1	247	47	78	22.6585
d[ffffffvvvvvvvvvvvvvffffff]ddd	chr19:10663687-10663988(+)$1	301	251	282	24.3947
cc[a!!bbuuuuuuuuuuuubb333a]ccc]	chr12:56510461-56510683(+)$1	222	160	191	24.6085
ffff!!bbtttttttttttbb]ffffffddd	chr12:54633796-54634032(-)$1	236	58	89	21.5418
[gggggggwwwwwwwwwwwwwwggggggggg	chr6:32083295-32083609(-)$1	314	236	267	24.9526
#ccccccwwwwwwwwwwwwwwccc]cccfff	chr15:83205467-83205734(-)$1	267	80	111	24.8672
"""cccxxxxxxxxxxxxxxxccc4444ggg	chrX:151995908-151996147(-)$1	239	89	120	21.4388

#otherMatches

#Seq PSSM
UUUCACCCUUUGGAAUCAUAGUAUGGGUAGA	chr10:75542871-75543118(+)$1	247	190	221	20.7290
GCAGCUCCCCUUCCACCCCCCGGGGAACUGA	chr16:28847998-28848237(+)$1	239	69	100	22.0914
UGCUGUAACUUUUUGGAACCUCAGUUUUUUG	chr19:46030024-46030237(+)$1	213	21	52	21.9188
AUUUUGUAGUUCUGUGCACCCUUACGAAGUG	chr6:33384349-33384598(-)$1	249	36	67	25.5611
GGGCAGGGUCCAAGAUCUUUUCCCUUCCCCA	chr19:48886043-48886300(-)$1	257	72	103	24.1083
AACCUGCUUACUUUUUCUCUUUAGCUCCGGU	chr6:31606807-31607052(-)$1	245	25	56	25.4508
UAAAUCUAGACUUCUCUUUAUAGGUUUCAGG	chr1:38462500-38462739(-)$1	239	6	37	25.0741
UUGUUGCAGAGCAAAUAUAAAUUGUAAUAAG	chr9:114695785-114696033(+)$1	248	23	54	24.8115
AUAAAAAGAACAUUAACAACCUUUAAUUACC	chr4:166263198-166263464(+)$1	266	10	41	24.0395
AGAGGUCCUCAAGACCCACGGACUCCUGGUC	chr19:49994885-49995099(+)$1	214	153	184	22.4421
AAGACUUUAAAUCAGAAUAAAAAAGUAGAGC	chr16:31202278-31202509(+)$1	231	155	186	25.1580
GCUGCUCUCGCUGACAAUAAAGAGCCCUUGC	chr1:54683869-54684096(+)$1	227	145	176	22.1724
CAUGAUCCUGAAGCUUAAGAAGGGCAAGUUC	chr17:80443384-80443632(+)$1	248	78	109	22.0679
AUUACUGGCCUUUUUCAUUUAUCUAUAAUUU	chr3:49397492-49397704(-)$1	212	130	161	24.7104
GAGGAGAGGAAGAAGCGCGGCUAACUUAUUC	chr14:105936668-105936930(+)$1	262	31	62	23.5490
UAAUUUUAACAAACGCAUUAAGAGGUUUAUU	chr19:3976133-3976351(-)$1	218	113	144	23.6807
CUCCGAGCUCGCCUGCAUCUACUCGGCCCUC	chr15:69745136-69745376(+)$1	240	162	193	21.3911
UGUAAACUUUUUUUUUGUUUUGUUUAAAAAU	chr1:205682338-205682597(-)$1	259	218	249	24.4810
GGGGAUUGACAUCGCCCACCUCCGACACCCA	chr17:35413886-35414142(+)$1	256	69	100	24.9720
UAAGCGCAAGGAAUACAUGGUGCGCUAGGGC	chr17:6917500-6917741(+)$1	241	77	108	20.9766
AACAUUUUGUAAUUUUCAUUUAAAUUGUUAG	chr4:103717777-103718006(-)$1	229	80	111	21.8241
UAUGAGGGGCCUUCACACUUCACUUCAUCCC	chr2:27293472-27293690(-)$1	218	135	166	20.2697
UUGUAUAUUUAAUGAAUGAACAUGUACAAUU	chr16:8986860-8987087(-)$1	227	122	153	26.1351
CGUCUUUAGUUUUGAUUUUGGAAAGAUGUUA	chr1:226548658-226548890(-)$1	232	114	145	24.7291
GuuuuauaaaagaaaaaauauauauauauuC	chr19:13063854-13064074(+)$1	220	60	91	23.8523
GUGCCCCCAGAAGUCUUAUACCUGCCACCCU	chr19:10225644-10225880(-)$1	236	32	63	22.5071
AAGCAUGUACAAUAAACCAAAAUAAGCUUGA	chr4:129191230-129191488(-)$1	258	172	203	26.1083
GACCUCCAAAUACCGUUAAGCUGGAGCCUCG	chr16:223569-223797(+)$1	228	11	42	24.5360
CUUAGCCCCCACCCACUUCCCUGGGCAAAUG	chrX:64959732-64959972(+)$1	240	179	210	24.5376
GUUCCGCAGAGCUUACUAUACGCGGUCUGUC	chr14:101201160-101201422(+)$1	262	107	138	24.4260
UAUCGGUCGUAUCCUCUGUCCUGACCGAGAA	chr16:204345-204566(+)$1	221	13	44	21.5918
UGUGAGCUGGAAGCACUGAACCUACCUCAUC	chr3:49133291-49133552(-)$1	261	86	117	22.8891
CUGCUGCUAAAUCAAGAACUGUUGCAGCAUC	chr15:34522126-34522422(+)$1	296	157	188	22.1739
CAAAUUUGUAAUUUAGAGACACUUAAUUUUG	chr10:98280692-98280925(-)$1	233	75	106	20.6723
AAUGUGUAGUCUCUAUAACCAAUACCUUUGU	chr2:136598103-136598397(-)$1	294	234	265	24.8741
UUAGUUACCUUAUAGUUACUGUGUAAUUAGU	chr3:49396891-49397131(-)$1	240	12	43	24.4229
GAGGAGCCGAAGAGAGGAUGGAGGCCCCCAG	chr19:38899448-38899739(+)$1	291	10	41	24.0546
UGAGAUGUGUUUUAUCUGUUUUAUAUUUUAA	chr1:38423594-38423902(-)$1	308	205	236	25.5611
CAUGAUUACUUGUUUUAUAUUUCAUGUUGGG	chr9:134108814-134109114(+)$1	300	209	240	21.8687
CUAAGUGUGUUGUUCUUGUUCACAGUUGGAC	chr2:217069810-217070086(+)$1	276	75	106	22.8056
CUUUCCCUGAGGAAUGAAAAAGGGAUUGAGG	chr20:39803973-39804223(+)$1	250	50	81	24.4700
UAACCGAAGUCCACGCCAAUCACUUUGUGUU	chr19:17389852-17390189(+)$1	337	291	322	21.9593
AUCUAUACUAAUAAAAAAGCAUGUGUAGAAA	chr6:3153855-3154124(-)$1	269	193	224	24.4305
CCUAGUUAUUUUUUUUUUUUUAACACCAUGU	chr19:59067151-59067361(-)$1	210	50	81	21.5471
GUAAUCCAGGACAAGAAAAUGUGGCAUUAGA	chrX:30237890-30238151(+)$1	261	104	135	22.1205
GUUCCGUGCCUGCCCUCUUCCAUUGAUCCUG	chr19:36142034-36142264(+)$1	230	7	38	24.9653
CAGUUUGCUUUUCUACCAUCCGGCUGUGGCU	chr11:2949617-2949841(-)$1	224	177	208	24.6385
CCUCAAGAAUCUCCUUAAAAACUUUGAAGUU	chr1:150190774-150191026(-)$1	252	90	121	25.1810
AUUAUUUCCUCUGAAUUUCUGGGCUUGGUCU	chr2:62095511-62095755(-)$1	244	14	45	23.9620
GACCUCCAAAUACCGUUAAGCUGGAGCCUCG	chr16:227333-227542(+)$1	209	58	89	24.7139
AUUACUGGCCUUUUUCAUUUAUCUAUAAUUU	chr3:49397388-49397637(-)$1	249	63	94	24.7104
CGCUGAUUCCCUCCCCCACCUGUCCUGCAGU	chr6:31637594-31637842(+)$1	248	103	134	23.7783
GAGUUUUCUAAACAGCAUAAGGAAGACUUGC	chr6:34741378-34741625(+)$1	247	47	78	22.6585
GCCCUCCUGGCAGGGUAGGGAAGGAGGACCC	chr19:10663687-10663988(+)$1	301	251	282	24.3947
UGGCGAGUAGUAGCGAGGAGACGAAGGCAAG	chr12:56510461-56510683(+)$1	222	160	191	24.6085
GUUGAGGAGGGCUAGAGAAUCACAAUUAAAA	chr12:54633796-54634032(-)$1	236	58	89	21.5418
UGGGGGUGUUCACCUCUCUUCUCAUCCCUUU	chr6:32083295-32083609(-)$1	314	236	267	24.9526
UGAAUCCAUUUUCUCGUUCCAGGACUUCGGC	chr15:83205467-83205734(-)$1	267	80	111	24.8672
AACGACUUUAGACAAGCACAUGUUACACCUG	chrX:151995908-151996147(-)$1	239	89	120	21.4388

#DB
))((((((................)))).))	chr10:75542871-75543118(+)$1	1	190	221	20.7290
.(((.(((((...........))))).))).	chr16:28847998-28848237(+)$1	1	69	100	22.0914
.((((................)))).)))))	chr19:46030024-46030237(+)$1	1	21	52	21.9188
(((((((((............))))))))))	chr6:33384349-33384598(-)$1	1	36	67	25.5611
(((.((((.............)))).)))).	chr19:48886043-48886300(-)$1	1	72	103	24.1083
)(((.(((..............)))...)))	chr6:31606807-31607052(-)$1	1	25	56	25.4508
.(((((((............))))))).)))	chr1:38462500-38462739(-)$1	1	6	37	25.0741
(((((((((............))))))))).	chr9:114695785-114696033(+)$1	1	23	54	24.8115
((..((((............)))).)))))(	chr4:166263198-166263464(+)$1	1	10	41	24.0395
((.(((((...........))))).)))(((	chr19:49994885-49995099(+)$1	1	153	184	22.4421
...(((((.............)))))...))	chr16:31202278-31202509(+)$1	1	155	186	25.1580
...(((((............)))))))..))	chr1:54683869-54684096(+)$1	1	145	176	22.1724
(.((.((((...........)))))).))))	chr17:80443384-80443632(+)$1	1	78	109	22.0679
((((.(((..............)))))))))	chr3:49397492-49397704(-)$1	1	130	161	24.7104
((((..((............))..))).)))	chr14:105936668-105936930(+)$1	1	31	62	23.5490
.((((((..............))))))..))	chr19:3976133-3976351(-)$1	1	113	144	23.6807
(.(((((..............))))).((((	chr15:69745136-69745376(+)$1	1	162	193	21.3911
(.(((((..............))))).))).	chr1:205682338-205682597(-)$1	1	218	249	24.4810
(((..(((..............)))..))).	chr17:35413886-35414142(+)$1	1	69	100	24.9720
..((((((............)))))).((((	chr17:6917500-6917741(+)$1	1	77	108	20.9766
((((.((((...........)))).))))..	chr4:103717777-103718006(-)$1	1	80	111	21.8241
.((((((...............)))))))))	chr2:27293472-27293690(-)$1	1	135	166	20.2697
((((((((.............))))))))))	chr16:8986860-8987087(-)$1	1	122	153	26.1351
(((((((..............)))))))...	chr1:226548658-226548890(-)$1	1	114	145	24.7291
((..((((............)))).)).)))	chr19:13063854-13064074(+)$1	1	60	91	23.8523
(((....(((...........))).))))))	chr19:10225644-10225880(-)$1	1	32	63	22.5071
.(((.(((.............))).))))))	chr4:129191230-129191488(-)$1	1	172	203	26.1083
((.(((((.............)))))..)))	chr16:223569-223797(+)$1	1	11	42	24.5360
.(((((((..............))))...))	chrX:64959732-64959972(+)$1	1	179	210	24.5376
...((((..............))))....))	chr14:101201160-101201422(+)$1	1	107	138	24.4260
))(((((((............)))))))...	chr16:204345-204566(+)$1	1	13	44	21.5918
.(((((.(((...........))).))))))	chr3:49133291-49133552(-)$1	1	86	117	22.8891
.((((((................))))))))	chr15:34522126-34522422(+)$1	1	157	188	22.1739
((((.(((...............))).))))	chr10:98280692-98280925(-)$1	1	75	106	20.6723
((.(.(((..............)))).))))	chr2:136598103-136598397(-)$1	1	234	265	24.8741
(((((((((...........).)))))))))	chr3:49396891-49397131(-)$1	1	12	43	24.4229
(.((.(((..............)))))))))	chr19:38899448-38899739(+)$1	1	10	41	24.0546
(((((((((............))))))))))	chr1:38423594-38423902(-)$1	1	205	236	25.5611
(((((................))))))((((	chr9:134108814-134109114(+)$1	1	209	240	21.8687
((((.((((...........)))).)))))(	chr2:217069810-217070086(+)$1	1	75	106	22.8056
(..(((((............)))))..)(((	chr20:39803973-39804223(+)$1	1	50	81	24.4700
((((((((((...........)))))).)))	chr19:17389852-17390189(+)$1	1	291	322	21.9593
.(((((((..............)))))))..	chr6:3153855-3154124(-)$1	1	193	224	24.4305
....((((............))))..)))))	chr19:59067151-59067361(-)$1	1	50	81	21.5471
.(((((((.............))).))))..	chrX:30237890-30238151(+)$1	1	104	135	22.1205
..((.(((............))).))...))	chr19:36142034-36142264(+)$1	1	7	38	24.9653
((....(((............)))..)))))	chr11:2949617-2949841(-)$1	1	177	208	24.6385
(...(((..............))).))).))	chr1:150190774-150191026(-)$1	1	90	121	25.1810
((((..(((...........)))..))))))	chr2:62095511-62095755(-)$1	1	14	45	23.9620
((.(((((.............)))))..)))	chr16:227333-227542(+)$1	1	58	89	24.7139
((((.(((..............)))))))))	chr3:49397388-49397637(-)$1	1	63	94	24.7104
.((.(((..............)))..)))))	chr6:31637594-31637842(+)$1	1	103	134	23.7783
(((((((((...........)))))))))((	chr6:34741378-34741625(+)$1	1	47	78	22.6585
(.((((((.............)))))).)))	chr19:10663687-10663988(+)$1	1	251	282	24.3947
((.(..((............))...).))).	chr12:56510461-56510683(+)$1	1	160	191	24.6085
((((..((...........)).)))))))))	chr12:54633796-54634032(-)$1	1	58	89	21.5418
.(((((((..............)))))))))	chr6:32083295-32083609(-)$1	1	236	267	24.9526
.((((((..............))).))))))	chr15:83205467-83205734(-)$1	1	80	111	24.8672
...(((...............)))....)))	chrX:151995908-151996147(-)$1	1	89	120	21.4388

#PSSM
f : 0.11	[ : 0.11	d : 0.11	e : 0.11	i : 0.08	c : 0.08	= : 0.05	" : 0.05	# : 0.05	% : 0.03	! : 0.03	: : 0.03	+ : 0.01	E : 0.01	g : 0.01	b : 0.01	$ : 0.01	a : 0.01	
f : 0.15	c : 0.15	e : 0.13	d : 0.08	i : 0.08	g : 0.06	" : 0.06	[ : 0.06	= : 0.05	% : 0.03	: : 0.03	b : 0.03	! : 0.01	# : 0.01	
f : 0.13	c : 0.11	e : 0.10	b : 0.08	d : 0.08	g : 0.08	i : 0.08	[ : 0.08	" : 0.06	= : 0.05	! : 0.05	% : 0.03	# : 0.01	
e : 0.20	c : 0.11	f : 0.11	d : 0.08	g : 0.08	i : 0.08	b : 0.06	= : 0.05	! : 0.05	[ : 0.03	# : 0.03	a : 0.03	% : 0.01	" : 0.01	
[ : 0.20	d : 0.15	e : 0.15	f : 0.11	g : 0.08	! : 0.08	c : 0.06	= : 0.05	i : 0.05	# : 0.03	
c : 0.23	d : 0.16	e : 0.16	f : 0.10	g : 0.08	! : 0.06	= : 0.05	i : 0.05	y : 0.03	# : 0.03	
c : 0.25	d : 0.16	e : 0.15	f : 0.10	g : 0.08	= : 0.05	i : 0.05	b : 0.05	y : 0.03	# : 0.01	[ : 0.01	x : 0.01	
c : 0.23	d : 0.15	w : 0.13	e : 0.11	g : 0.06	y : 0.05	= : 0.05	i : 0.05	b : 0.05	f : 0.05	x : 0.03	
w : 0.28	u : 0.16	v : 0.13	y : 0.06	c : 0.06	d : 0.05	x : 0.05	= : 0.03	i : 0.03	t : 0.03	e : 0.01	g : 0.01	a : 0.01	f : 0.01	
w : 0.28	u : 0.25	v : 0.13	t : 0.13	y : 0.06	x : 0.05	c : 0.03	e : 0.01	f : 0.01	
w : 0.28	u : 0.25	t : 0.20	v : 0.13	y : 0.06	x : 0.05	
w : 0.28	u : 0.25	t : 0.20	v : 0.13	y : 0.06	x : 0.05	
w : 0.28	u : 0.25	t : 0.20	v : 0.13	y : 0.06	x : 0.05	
w : 0.28	u : 0.25	t : 0.20	v : 0.13	y : 0.06	x : 0.05	
w : 0.28	u : 0.25	t : 0.20	v : 0.13	y : 0.06	x : 0.05	
w : 0.28	u : 0.25	t : 0.20	v : 0.13	y : 0.06	x : 0.05	
w : 0.28	u : 0.25	t : 0.20	v : 0.13	y : 0.06	x : 0.05	
w : 0.28	u : 0.25	t : 0.20	v : 0.13	y : 0.06	x : 0.05	
w : 0.28	u : 0.25	t : 0.20	v : 0.13	y : 0.06	x : 0.05	
w : 0.28	u : 0.25	t : 0.16	v : 0.13	y : 0.06	x : 0.05	e : 0.01	b : 0.01	
w : 0.28	v : 0.13	d : 0.10	u : 0.08	y : 0.06	t : 0.06	e : 0.05	b : 0.05	x : 0.05	c : 0.03	g : 0.01	f : 0.01	a : 0.01	i : 0.01	
c : 0.18	e : 0.15	d : 0.15	w : 0.15	f : 0.08	= : 0.05	g : 0.05	y : 0.03	i : 0.03	b : 0.03	x : 0.03	] : 0.03	
c : 0.28	d : 0.16	e : 0.15	f : 0.11	g : 0.08	= : 0.05	i : 0.05	y : 0.03	2 : 0.01	x : 0.01	3 : 0.01	
c : 0.27	d : 0.16	e : 0.15	f : 0.13	g : 0.08	= : 0.05	i : 0.05	2 : 0.03	y : 0.01	] : 0.01	3 : 0.01	
] : 0.18	e : 0.13	c : 0.13	f : 0.13	d : 0.08	g : 0.08	2 : 0.06	= : 0.05	i : 0.05	b : 0.03	3 : 0.01	4 : 0.01	
e : 0.18	f : 0.15	c : 0.10	g : 0.08	b : 0.08	2 : 0.08	d : 0.06	i : 0.06	= : 0.05	] : 0.03	4 : 0.03	a : 0.03	3 : 0.01	
f : 0.15	e : 0.11	] : 0.10	g : 0.08	c : 0.08	d : 0.06	3 : 0.06	i : 0.06	b : 0.06	2 : 0.06	= : 0.05	: : 0.03	4 : 0.03	
d : 0.15	c : 0.13	e : 0.11	f : 0.10	] : 0.08	g : 0.08	3 : 0.06	i : 0.06	2 : 0.06	= : 0.05	4 : 0.03	a : 0.01	b : 0.01	
d : 0.23	e : 0.15	f : 0.11	c : 0.10	i : 0.08	g : 0.08	3 : 0.06	= : 0.05	] : 0.03	2 : 0.03	4 : 0.01	: : 0.01	
d : 0.22	e : 0.18	c : 0.15	f : 0.10	g : 0.08	i : 0.06	b : 0.05	= : 0.05	2 : 0.03	: : 0.03	3 : 0.01	
d : 0.20	c : 0.11	f : 0.11	e : 0.10	] : 0.08	g : 0.08	b : 0.06	= : 0.05	i : 0.05	3 : 0.03	2 : 0.03	: : 0.03	F : 0.01	

#score	1390.166836146052
#seq	59
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_CDS_m1_run1.txt

#BEAR
!ffffff[a[eeeee[aooooooaeeeee]affffff2	chr3:32932966-32933189(+)$1	223	108	146	13.3461
[dddd"""eeeeebb!!cccmmmmccc22bb4444eee	chr16:18812651-18812873(-)$1	222	96	134	11.4826
[dddd[a[ffffffcccooooooccc]ffffff333a]	chr2:171573458-171573682(+)$1	224	164	202	13.8452
=======&&&&&&&ddddoooooodddd==========	chr16:56643143-56643390(+)$1	247	149	187	13.0493
%bbggggggg$$$$$cccooooooccc4444ggggggg	chr22:29194967-29195183(-)$1	216	129	167	13.3086
dddd####dddd####bboooooobb333dddd]dddd	chr16:31102269-31102561(-)$1	292	1	39	13.4586
!ffffff[a[eeeee[aooooooaeeeee]affffff2	chr3:32932943-32933166(+)$1	223	131	169	13.3461
dddd!!ccc[bb!!ddddoooooodddd22bbccc555	chr22:29196261-29196498(-)$1	237	95	133	16.3635
dddd!!ccc[bb!!ddddoooooodddd22bbccc555	chr22:29196303-29196563(-)$1	260	160	198	16.3635
gggggggccc[gggggggaooooooa]ggggggg]ccc	chr1:20980053-20980330(-)$1	277	150	188	12.8129
eeeeccc[a!!bb[cccrrrrrrrrrcccbb22a]ccc	chr19:18704233-18704490(-)$1	257	13	51	11.0669
[dddd[a[bbbb!!ddddoooooodddd]bb]bb]a]d	chr6:89790812-89791072(+)$1	260	18	56	17.1077
:dddd[ccc[dddd!!bboooooobb22dddd4444cc	chr2:171572746-171572982(+)$1	236	131	169	12.7321
[dddd"""eeeeebb!!cccmmmmccc22bb4444eee	chr16:18812673-18812938(-)$1	265	161	199	11.4826
gggg!!a[ccc!!eeeeemmmmeeeee22cccaggggg	chr22:29196364-29196621(-)$1	257	93	131	11.2591
[bb[bb####ccc[ddddrrrrrrrrrdddd]ccc22b	chr15:44086061-44086286(+)$1	225	12	50	11.0806
=========bb"""eeeeennnnneeeee333bb333=	chr4:74321305-74321556(+)$1	251	45	83	12.2363
:ccc"""ffffff[ddddoooooodddd22ffffff33	chr5:73931051-73931319(-)$1	268	2	40	15.6785
dddd!!ccc[bb!!ddddoooooodddd22bbccc555	chr22:29196236-29196461(-)$1	225	58	96	16.3635
ffeeeee[a[ccc[eeeeemmmmeeeee]ccc]a]eee	chr1:214169892-214170163(+)$1	271	117	155	10.5933
::::a!!eeeee!!ddddoooooodddd]eeeee22ad	chr20:52199147-52199453(-)$1	306	68	106	12.4537
ccc[a!!a!!eeeee[aooooooa]eeeee22a22a]c	chr7:6505613-6505898(-)$1	285	98	136	14.4619
f]cccgggggggbb[cccooooooccc22bb22ggggg	chr20:278163-278466(+)$1	303	130	168	13.9720
ccccbbccc[ccc[ddddooooooddddccc22ccc]b	chr17:39847020-39847272(+)$1	252	92	130	15.5101
ccc!!a!!bb[a[dddd[ccclllccc333dddd]a22	chr14:35873629-35873919(-)$1	290	3	41	12.2589
eee!!dddd[bb!!ddddooooooddddbbdddd22ee	chr12:125270551-125270850(-)$1	299	206	244	14.7742
========eeeee[ddddoooooodddd]eeeee::::	chr2:171573810-171574077(+)$1	267	198	236	12.6785

#otherMatches

#Seq PSSM
GUUCCUGCGCCCACAAGGGGUAGCUGUGGACCAGGAAG	chr3:32932966-32933189(+)$1	223	108	146	13.3461
AGAUAAUCGCAGCACCAACCUGCUGGUGAGUCCUGGCU	chr16:18812651-18812873(-)$1	222	96	134	11.4826
CUGCGGCAAGGUGUACGGGAAGACGUCGCACCUGAAGG	chr2:171573458-171573682(+)$1	224	164	202	13.8452
UAAAGAACGCGACUUCCACAAACCUGGAUUUUUUAUGU	chr16:56643143-56643390(+)$1	247	149	187	13.0493
AGAAGAAGAGGUAAAACUACUUAAGGUCAAACUCUUUU	chr22:29194967-29195183(-)$1	216	129	167	13.3086
UGAUUUCUGCAUUGUUUGUAUCACCACCUAUGCUAUCA	chr16:31102269-31102561(-)$1	292	1	39	13.4586
GUUCCUGCGCCCACAAGGGGUAGCUGUGGACCAGGAAG	chr3:32932943-32933166(+)$1	223	131	169	13.3461
CGCUCAUGGUGCCAGCCCAGAGAGGGGCCAGCCCGGAG	chr22:29196261-29196498(-)$1	237	95	133	16.3635
CGCUCAUGGUGCCAGCCCAGAGAGGGGCCAGCCCGGAG	chr22:29196303-29196563(-)$1	260	160	198	16.3635
GUCCCAUCAUCGGGUGGGCGAGACAGCCCCACCCAAUG	chr1:20980053-20980330(-)$1	277	150	188	12.8129
aggacacgaaugaagccuccuUCAGUGGCUCUGUGGUG	chr19:18704233-18704490(-)$1	257	13	51	11.0669
GCGCUCCAGCAGCUCUGCCCAACCGCAGCCUCGCCGUG	chr6:89790812-89791072(+)$1	260	18	56	17.1077
UCCUGCAGGUGCCCUACGACCCCGCGCUGGGCUCACCC	chr2:171572746-171572982(+)$1	236	131	169	12.7321
AGAUAAUCGCAGCACCAACCUGCUGGUGAGUCCUGGCU	chr16:18812673-18812938(-)$1	265	161	199	11.4826
UGCGUAGUCUGGAGCUAUGGUGGUGGUGGCAGCCGCGC	chr22:29196364-29196621(-)$1	257	93	131	11.2591
CGAUGGCAUUCCCUUUGCCCUGAGUCUGCAGCGGGUCC	chr15:44086061-44086286(+)$1	225	12	50	11.0806
AAGAGAAGACAAAACGAGUCUUUCAUUCGGUGUGAACU	chr4:74321305-74321556(+)$1	251	45	83	12.2363
GAGUUUAGUGCAUGUGCGAUUGGCUGCAAAGUGUACAU	chr5:73931051-73931319(-)$1	268	2	40	15.6785
CGCUCAUGGUGCCAGCCCAGAGAGGGGCCAGCCCGGAG	chr22:29196236-29196461(-)$1	225	58	96	16.3635
CAUGAAUCCCCAAGGUUCUGAGCAGGAUGUUGAGUAUU	chr1:214169892-214170163(+)$1	271	117	155	10.5933
CAACGGAACUUUGAGAUUAUAUGCAAUCGAAAGUGACA	chr20:52199147-52199453(-)$1	306	68	106	12.4537
GCUUCUACUUUGAGGGCUUCUUUGACCUCAUUGCUGUG	chr7:6505613-6505898(-)$1	285	98	136	14.4619
cggcccgcggcccggggcgAGGAGGCCGACGGCGGCCG	chr20:278163-278466(+)$1	303	130	168	13.9720
UCCUUGCAAUGAGUAGAAUUUCCCUUCUCUCCCUUGUC	chr17:39847020-39847272(+)$1	252	92	130	15.5101
GCGAGGAAGCAGCGCGCAGCCCGCGGCCCAGCGCACCC	chr14:35873629-35873919(-)$1	290	3	41	12.2589
UGAGUAAUGAGACCUGGUACUUGCAucauccauucauc	chr12:125270551-125270850(-)$1	299	206	244	14.7742
UCUCCGUUGCCUGCCUCCCAAAAUGGAGCCAGGCUUCC	chr2:171573810-171574077(+)$1	267	198	236	12.6785

#DB
.((((((.(.(((((.(......)))))).))))))).	chr3:32932966-32933189(+)$1	1	108	146	13.3461
.((((...(((((((..(((....)))..))....)))	chr16:18812651-18812873(-)$1	1	96	134	11.4826
.((((.(.(((((((((......))).))))))...).	chr2:171573458-171573682(+)$1	1	164	202	13.8452
(((((((.......((((......))))))))))))))	chr16:56643143-56643390(+)$1	1	149	187	13.0493
.(((((((((.....(((......)))....)))))))	chr22:29194967-29195183(-)$1	1	129	167	13.3086
((((....((((....((......))...)))).))))	chr16:31102269-31102561(-)$1	1	1	39	13.4586
.((((((.(.(((((.(......)))))).))))))).	chr3:32932943-32933166(+)$1	1	131	169	13.3461
((((..(((.((..((((......))))..)))))...	chr22:29196261-29196498(-)$1	1	95	133	16.3635
((((..(((.((..((((......))))..)))))...	chr22:29196303-29196563(-)$1	1	160	198	16.3635
)))))))(((.((((((((......).))))))).)))	chr1:20980053-20980330(-)$1	1	150	188	12.8129
(((((((.(..((.(((.........)))))..).)))	chr19:18704233-18704490(-)$1	1	13	51	11.0669
.((((.(.((((..((((......)))).)).)).).)	chr6:89790812-89791072(+)$1	1	18	56	17.1077
.((((.(((.((((..((......))..))))....))	chr2:171572746-171572982(+)$1	1	131	169	12.7321
.((((...(((((((..(((....)))..))....)))	chr16:18812673-18812938(-)$1	1	161	199	11.4826
((((..(.(((..(((((....)))))..)))))))))	chr22:29196364-29196621(-)$1	1	93	131	11.2591
.((.((....(((.((((.........)))).)))..)	chr15:44086061-44086286(+)$1	1	12	50	11.0806
(((((((((((...(((((.....)))))...))...)	chr4:74321305-74321556(+)$1	1	45	83	12.2363
.(((...((((((.((((......))))..))))))..	chr5:73931051-73931319(-)$1	1	2	40	15.6785
((((..(((.((..((((......))))..)))))...	chr22:29196236-29196461(-)$1	1	58	96	16.3635
(((((((.(.(((.(((((....))))).))).).)))	chr1:214169892-214170163(+)$1	1	117	155	10.5933
....(..(((((..((((......)))).)))))..)(	chr20:52199147-52199453(-)$1	1	68	106	12.4537
(((.(..(..(((((.(......).)))))..)..).)	chr7:6505613-6505898(-)$1	1	98	136	14.4619
).)))(((((((((.(((......)))..))..)))))	chr20:278163-278466(+)$1	1	130	168	13.9720
(((((((((.(((.((((......)))))))..))).)	chr17:39847020-39847272(+)$1	1	92	130	15.5101
(((..(..((.(.((((.(((...)))...)))).)..	chr14:35873629-35873919(-)$1	1	3	41	12.2589
(((..((((.((..((((......))))))))))..))	chr12:125270551-125270850(-)$1	1	206	244	14.7742
))))))))(((((.((((......)))).)))))....	chr2:171573810-171574077(+)$1	1	198	236	12.6785

#PSSM
[ : 0.18	d : 0.14	= : 0.11	: : 0.11	c : 0.11	! : 0.07	g : 0.07	e : 0.07	f : 0.07	% : 0.03	
d : 0.33	c : 0.14	f : 0.11	= : 0.11	b : 0.07	g : 0.07	e : 0.07	: : 0.03	] : 0.03	
d : 0.33	c : 0.18	= : 0.11	e : 0.11	f : 0.07	b : 0.07	g : 0.07	: : 0.03	
d : 0.33	= : 0.11	g : 0.11	c : 0.11	f : 0.07	e : 0.07	[ : 0.07	! : 0.07	: : 0.03	
! : 0.22	d : 0.18	= : 0.11	f : 0.07	g : 0.07	c : 0.07	b : 0.07	a : 0.07	# : 0.03	" : 0.03	e : 0.03	
! : 0.22	" : 0.11	[ : 0.11	= : 0.11	g : 0.11	f : 0.07	b : 0.07	# : 0.03	c : 0.03	e : 0.03	a : 0.03	d : 0.03	
c : 0.22	" : 0.11	a : 0.11	= : 0.11	g : 0.11	! : 0.11	f : 0.07	# : 0.07	e : 0.03	d : 0.03	
[ : 0.25	c : 0.22	" : 0.07	g : 0.07	# : 0.07	= : 0.07	& : 0.03	f : 0.03	e : 0.03	a : 0.03	! : 0.03	d : 0.03	
c : 0.25	a : 0.14	e : 0.14	f : 0.07	g : 0.07	d : 0.07	b : 0.07	& : 0.03	# : 0.03	= : 0.03	! : 0.03	
[ : 0.33	e : 0.14	b : 0.11	f : 0.07	g : 0.07	c : 0.07	! : 0.07	& : 0.03	d : 0.03	# : 0.03	
e : 0.25	b : 0.22	c : 0.14	f : 0.07	d : 0.07	[ : 0.07	& : 0.03	$ : 0.03	! : 0.03	g : 0.03	
e : 0.25	b : 0.22	c : 0.11	f : 0.07	d : 0.07	g : 0.07	& : 0.03	$ : 0.03	! : 0.03	" : 0.03	a : 0.03	
! : 0.25	e : 0.22	c : 0.11	f : 0.07	b : 0.07	& : 0.03	$ : 0.03	# : 0.03	g : 0.03	d : 0.03	" : 0.03	[ : 0.03	
! : 0.22	[ : 0.22	e : 0.14	b : 0.11	d : 0.07	f : 0.03	& : 0.03	$ : 0.03	# : 0.03	g : 0.03	" : 0.03	
d : 0.44	e : 0.22	b : 0.07	c : 0.07	$ : 0.03	# : 0.03	g : 0.03	! : 0.03	[ : 0.03	
d : 0.44	c : 0.14	[ : 0.11	! : 0.11	e : 0.11	# : 0.03	g : 0.03	
d : 0.44	c : 0.14	a : 0.11	e : 0.11	! : 0.07	b : 0.07	g : 0.03	
d : 0.40	o : 0.14	c : 0.14	e : 0.11	b : 0.07	g : 0.03	r : 0.03	[ : 0.03	
o : 0.66	c : 0.11	r : 0.07	e : 0.07	a : 0.03	m : 0.03	
o : 0.70	c : 0.11	r : 0.07	m : 0.07	n : 0.03	
o : 0.70	m : 0.14	r : 0.07	n : 0.03	c : 0.03	
o : 0.70	m : 0.14	r : 0.07	n : 0.03	l : 0.03	
o : 0.70	m : 0.11	r : 0.07	e : 0.03	n : 0.03	l : 0.03	
o : 0.55	a : 0.11	m : 0.07	r : 0.07	e : 0.07	c : 0.03	n : 0.03	l : 0.03	
d : 0.37	c : 0.22	e : 0.18	b : 0.07	r : 0.07	o : 0.03	] : 0.03	
d : 0.37	e : 0.22	c : 0.22	b : 0.07	r : 0.07	a : 0.03	
d : 0.37	e : 0.22	c : 0.22	] : 0.07	3 : 0.03	2 : 0.03	r : 0.03	
d : 0.40	e : 0.18	2 : 0.18	3 : 0.07	f : 0.03	4 : 0.03	g : 0.03	c : 0.03	
2 : 0.29	e : 0.14	] : 0.14	3 : 0.07	c : 0.07	d : 0.07	f : 0.03	= : 0.03	4 : 0.03	g : 0.03	b : 0.03	
b : 0.22	2 : 0.14	d : 0.11	c : 0.11	e : 0.11	] : 0.07	3 : 0.07	f : 0.03	= : 0.03	4 : 0.03	g : 0.03	
b : 0.29	d : 0.18	c : 0.11	a : 0.07	f : 0.07	e : 0.07	= : 0.03	4 : 0.03	g : 0.03	3 : 0.03	2 : 0.03	
f : 0.14	d : 0.14	2 : 0.14	b : 0.11	4 : 0.07	g : 0.07	] : 0.07	c : 0.07	e : 0.07	= : 0.03	3 : 0.03	
f : 0.14	c : 0.14	4 : 0.11	d : 0.11	2 : 0.11	g : 0.07	b : 0.07	a : 0.07	e : 0.07	= : 0.03	] : 0.03	
c : 0.18	g : 0.14	f : 0.11	4 : 0.11	a : 0.07	b : 0.07	e : 0.07	d : 0.07	3 : 0.03	= : 0.03	] : 0.03	2 : 0.03	
c : 0.18	] : 0.18	f : 0.11	4 : 0.11	g : 0.11	2 : 0.11	3 : 0.07	= : 0.03	d : 0.03	: : 0.03	
f : 0.11	e : 0.11	g : 0.11	5 : 0.11	c : 0.11	a : 0.11	2 : 0.11	3 : 0.07	= : 0.03	d : 0.03	4 : 0.03	: : 0.03	
e : 0.14	g : 0.11	5 : 0.11	c : 0.11	] : 0.11	f : 0.07	a : 0.07	2 : 0.07	3 : 0.07	= : 0.03	d : 0.03	: : 0.03	
e : 0.14	c : 0.14	2 : 0.11	g : 0.11	d : 0.11	5 : 0.11	= : 0.07	b : 0.07	] : 0.03	3 : 0.03	: : 0.03	

#score	363.087645969733
#seq	27
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF233ZXV_DHX30_UTR_m3_run2.txt

#BEAR
=======!!===========	chr17:2593086-2593349(-)$1	263	99	119	10.5566
a[ggggggglllggggggg]	chr12:123756216-123756482(-)$1	266	102	122	12.8538
====================	chr11:2151084-2151301(-)$1	217	13	33	10.5785
ggggggg[allla]gggggg	chr11:2151067-2151284(-)$1	217	185	205	14.0436
:gggggggnnnnnggggggg	chr20:24944195-24944436(-)$1	241	149	169	9.6781
=========lll========	chr11:2150863-2151081(-)$1	218	86	106	13.6945
ggggggg[allla]gggggg	chr11:2151027-2151253(-)$1	226	154	174	14.0436
ggggg[ccclllccc]gggg	chr11:10529787-10530038(-)$1	251	147	167	12.2048
ggggg[ccclllccc]gggg	chr6:62284028-62284301(+)$1	273	86	106	12.2048
d:ggggggglllgggggggc	chr11:2150892-2151098(-)$1	206	103	123	11.3779
ggggggg[allla]gggggg	chr11:2151016-2151227(-)$1	211	128	148	14.0436
bbgggggggmmmmggggggg	chr17:22023635-22023929(+)$1	294	127	147	10.0366
=========lll========	chr11:2150881-2151092(-)$1	211	97	117	13.6945
gggggggooooooggggggg	chr2:36583185-36583459(+)$1	274	148	168	11.1742
=========lll========	chr11:2150954-2151164(-)$1	210	169	189	13.6945
c[ggggggglllgggggggc	chr11:2150779-2150988(-)$1	209	32	52	12.8000
ggggggg[allla]gggggg	chr11:2151012-2151216(-)$1	204	117	137	14.0436
ggggggg[allla]gggggg	chr11:2151054-2151262(-)$1	208	163	183	14.0436

#otherMatches

#Seq PSSM
UCGGGGUUGGCUUGCUGGGC	chr17:2593086-2593349(-)$1	263	99	119	10.5566
CGCACCCGGGGCCUGGGUGA	chr12:123756216-123756482(-)$1	266	102	122	12.8538
CACCCUGCCUUGUCUCCAGG	chr11:2151084-2151301(-)$1	217	13	33	10.5785
CCGCGGCGCCUAGGGCUGCG	chr11:2151067-2151284(-)$1	217	185	205	14.0436
UGCCCGGGCCCCACCUGGGC	chr20:24944195-24944436(-)$1	241	149	169	9.6781
CUAGAGGCCUGAGGCUUCUG	chr11:2150863-2151081(-)$1	218	86	106	13.6945
CCGCGGCGCCUAGGGCUGCG	chr11:2151027-2151253(-)$1	226	154	174	14.0436
UCUAGCAUUCUCAGUAUUAG	chr11:10529787-10530038(-)$1	251	147	167	12.2048
UCUAGCAUUACCAGUAUUAG	chr6:62284028-62284301(+)$1	273	86	106	12.2048
CUAGAGGCCUGAGGCUUCUG	chr11:2150892-2151098(-)$1	206	103	123	11.3779
CCGCGGCGCCUAGGGCUGCG	chr11:2151016-2151227(-)$1	211	128	148	14.0436
CCAAUGGUGCAGCCGCUAUU	chr17:22023635-22023929(+)$1	294	127	147	10.0366
CUAGAGGCCUGAGGCUUCUG	chr11:2150881-2151092(-)$1	211	97	117	13.6945
gcugcuggugcggcggcggc	chr2:36583185-36583459(+)$1	274	148	168	11.1742
CUAGAGGCCUGAGGCUUCUG	chr11:2150954-2151164(-)$1	210	169	189	13.6945
GCAUGACCCCGGGGGUCGUC	chr11:2150779-2150988(-)$1	209	32	52	12.8000
CCGCGGCGCCUAGGGCUGCG	chr11:2151012-2151216(-)$1	204	117	137	14.0436
CCGCGGCGCCUAGGGCUGCG	chr11:2151054-2151262(-)$1	208	163	183	14.0436

#DB
(((((((..(((((((((((	chr17:2593086-2593349(-)$1	1	99	119	10.5566
(.(((((((...))))))).	chr12:123756216-123756482(-)$1	1	102	122	12.8538
((((((((((((((((((((	chr11:2151084-2151301(-)$1	1	13	33	10.5785
(((((((.(...).))))))	chr11:2151067-2151284(-)$1	1	185	205	14.0436
.(((((((.....)))))))	chr20:24944195-24944436(-)$1	1	149	169	9.6781
(((((((((...))))))))	chr11:2150863-2151081(-)$1	1	86	106	13.6945
(((((((.(...).))))))	chr11:2151027-2151253(-)$1	1	154	174	14.0436
(((((.(((...))).))))	chr11:10529787-10530038(-)$1	1	147	167	12.2048
(((((.(((...))).))))	chr6:62284028-62284301(+)$1	1	86	106	12.2048
).(((((((...)))))))(	chr11:2150892-2151098(-)$1	1	103	123	11.3779
(((((((.(...).))))))	chr11:2151016-2151227(-)$1	1	128	148	14.0436
))(((((((....)))))))	chr17:22023635-22023929(+)$1	1	127	147	10.0366
(((((((((...))))))))	chr11:2150881-2151092(-)$1	1	97	117	13.6945
(((((((......)))))))	chr2:36583185-36583459(+)$1	1	148	168	11.1742
(((((((((...))))))))	chr11:2150954-2151164(-)$1	1	169	189	13.6945
(.(((((((...))))))))	chr11:2150779-2150988(-)$1	1	32	52	12.8000
(((((((.(...).))))))	chr11:2151012-2151216(-)$1	1	117	137	14.0436
(((((((.(...).))))))	chr11:2151054-2151262(-)$1	1	163	183	14.0436

#PSSM
g : 0.44	= : 0.27	a : 0.05	: : 0.05	d : 0.05	b : 0.05	c : 0.05	
g : 0.50	= : 0.27	[ : 0.11	: : 0.05	b : 0.05	
g : 0.72	= : 0.27	
g : 0.72	= : 0.27	
g : 0.72	= : 0.27	
g : 0.61	= : 0.27	[ : 0.11	
g : 0.61	= : 0.27	c : 0.11	
g : 0.27	[ : 0.27	= : 0.22	c : 0.11	! : 0.05	o : 0.05	
a : 0.27	g : 0.22	= : 0.22	c : 0.11	! : 0.05	n : 0.05	o : 0.05	
l : 0.72	= : 0.11	n : 0.05	m : 0.05	o : 0.05	
l : 0.72	= : 0.11	n : 0.05	m : 0.05	o : 0.05	
l : 0.72	= : 0.11	n : 0.05	m : 0.05	o : 0.05	
= : 0.27	a : 0.27	g : 0.16	c : 0.11	n : 0.05	m : 0.05	o : 0.05	
g : 0.33	= : 0.27	] : 0.27	c : 0.11	
g : 0.61	= : 0.27	c : 0.11	
g : 0.61	= : 0.27	] : 0.11	
g : 0.72	= : 0.27	
g : 0.72	= : 0.27	
g : 0.72	= : 0.27	
g : 0.55	= : 0.27	c : 0.11	] : 0.05	

#score	224.76760289613333
#seq	18
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_CDS_m2_run1.txt

#BEAR
ggg!!eeeeemmmmeeeeeggggg	chr2:73466669-73466883(+)$1	214	17	41	10.5767
dddd"""cccmmmmcccddddddd	chr18:9614122-9614369(-)$1	247	109	133	10.3703
d[ccc!!cccmmmmccc22cccdd	chr3:49412772-49413069(-)$1	297	153	177	11.4101
a[dddd[cccmmmmcccdddd]a:	chr19:1863307-1863649(-)$1	342	285	309	9.8077
gggggg[cccmmmmcccggggggg	chr17:27071120-27071374(+)$1	254	145	169	12.4921
bb[ddddcccmmmmccc]dddd]b	chr12:101801319-101801560(-)$1	241	165	189	10.0613
ee[gggggggmmmmggggggg]ee	chrX:80457476-80457808(+)$1	332	77	101	10.9770
eeeee!!cccmmmmccceeeee]d	chr9:117349948-117350298(+)$1	350	118	142	11.8754
cc[ccc[cccmmmmccc]ccc333	chr11:31484720-31484953(-)$1	233	136	160	11.8603
===========lll==========	chr1:44441873-44442079(+)$1	206	117	141	9.7684
[eeeee[cccmmmmccc]eeeee]	chr11:819639-819939(+)$1	300	247	271	12.0887
==========mmmm==========	chr7:23145317-23145755(+)$1	438	74	98	12.2270
fff[a!!cccmmmmccc22a]fff	chr9:138392437-138392698(+)$1	261	176	200	11.6048
"""cccddddmmmmdddd333ccc	chr21:35287953-35288196(-)$1	243	127	151	10.2852
fff[bb[cccmmmmccc]bb22ff	chr10:97050549-97050862(-)$1	313	109	133	10.2570
deeeee[cccmmmmccc]eeeeea	chr5:149737169-149737511(+)$1	342	152	176	11.8673
ggggg"""bbmmmmbb333ggggg	chr17:34136415-34136681(+)$1	266	239	263	11.0728
ffffff[cccmmmmccc]ffffff	chr1:234509218-234509523(+)$1	305	31	55	10.9947
ffdddd[cccmmmmccc]dddd]f	chr15:49170229-49170552(+)$1	323	41	65	10.8431
==========mmmm==========	chr2:220116710-220117053(-)$1	343	224	248	12.2270
eeee!!ddddmmmmdddd]eeeee	chr20:57617660-57617904(-)$1	244	21	45	10.9237
ggggggg[bbmmmmbb]ggggggg	chr16:3767338-3767560(-)$1	222	131	155	10.7241
gggggg[cccmmmmccc]gggggg	chr4:56496518-56496727(-)$1	209	28	52	12.7492
iieeeee[bbmmmmbb]eeeee]i	chr15:91537538-91537868(-)$1	330	133	157	10.1372
eeee!!ddddmmmmdddd]eeeee	chr11:65686788-65687114(+)$1	326	122	146	10.9237
a[ccc[ddddmmmmdddd]ccc]a	chr22:19419950-19420193(+)$1	243	177	201	10.8287
h[ccc[ddddmmmmddddccc]hh	chr6:8064395-8064727(-)$1	332	46	70	10.2616
b[a[bb[cccmmmmccc22bba]b	chr12:104324140-104324406(+)$1	266	115	139	10.2495
eeeeea[cccmmmmccc]a]eeee	chr7:127228457-127228720(+)$1	263	118	142	11.9016
Feeeee[cccmmmmccc]eeeeeD	chr6:135502503-135502772(+)$1	269	238	262	10.4908
gggg!!ddddmmmmddddgggggg	chr22:19950022-19950265(+)$1	243	107	131	11.4469
==========mmmm==========	chr11:118955629-118955872(+)$1	243	47	71	12.2270
dd[gggggggmmmmggggggg]dd	chr19:18304035-18304316(+)$1	281	63	87	10.4546
===!!eeeeemmmmeeeee=====	chr11:64084820-64085128(-)$1	308	173	197	10.8582
feeeee[cccmmmmccc]eeeee4	chr15:90776808-90777034(-)$1	226	171	195	11.8689
hhhhhhhcccmmmmccc4444hhh	chr20:2644697-2644946(-)$1	249	197	221	9.9992
e[a[ccc[bbmmmmbb]ccc]a]e	chr17:38974992-38975306(-)$1	314	124	148	9.8917
dd[gggggggmmmmggggggg22d	chr1:11994757-11995014(+)$1	257	106	130	10.1660
eeeee[ddddmmmmdddd22eeee	chr1:153602884-153603196(+)$1	312	118	142	10.3999
==========mmmm==========	chr17:40761002-40761291(-)$1	289	68	92	12.2270
gggg"""cccmmmmcccggggggg	chr6:10749754-10749976(+)$1	222	61	85	12.4427
fff[a[ddddmmmmdddd]a]fff	chr9:139760532-139760827(-)$1	295	44	68	10.5755
==========mmmm==========	chr9:132597341-132597582(-)$1	241	35	59	12.2270
[aa!!eeeeemmmmeeeee22a]a	chr2:109335880-109336189(+)$1	309	64	88	9.6692
eee[a[ddddmmmmdddd]a]eee	chr6:150038884-150039198(-)$1	314	227	251	10.9432
!!ccc[ddddmmmmddddccc]bb	chr8:125555243-125555490(+)$1	247	179	203	10.1262
ggggg[ddddmmmmdddd333ggg	chr11:118926760-118926983(-)$1	223	139	163	11.4399
ffffff[cccmmmmccc]ffffff	chr17:6915894-6916180(+)$1	286	181	205	10.9947
dccc[eeeeemmmmeeeee]ccc]	chr9:131085056-131085307(+)$1	251	115	139	9.6554
:eeeee[cccmmmmccc]eeeeeG	chr17:46703453-46703842(-)$1	389	148	172	10.4222
ggggggg[bbmmmmbb]ggggggg	chr3:63849346-63849610(-)$1	264	11	35	10.7241
eeee"""cccmmmmccc]eeeee:	chr15:79231380-79231615(-)$1	235	178	202	11.1931
iiiiiii[bbmmmmbb]iiiiiii	chr22:41864504-41864763(-)$1	259	173	197	10.9094
cccc[eeeeemmmmeeeee]ccc]	chr11:66035994-66036265(+)$1	271	232	256	9.7402

#otherMatches

#Seq PSSM
GAGAUGGGAGCAUUUUCCCCUUUC	chr2:73466669-73466883(+)$1	214	17	41	10.5767
CUGCUUCAGGAGGACCUGCAGGAG	chr18:9614122-9614369(-)$1	247	109	133	10.3703
CCACAGUGUUUGAGAACUAUGUGG	chr3:49412772-49413069(-)$1	297	153	177	11.4101
gcggcgcgccgcgaggccgccuca	chr19:1863307-1863649(-)$1	342	285	309	9.8077
UUCCUCAGGUGCUGGCCGGGGAGC	chr17:27071120-27071374(+)$1	254	145	169	12.4921
GGGCGCGCUCGAGGGAGCCGCGGC	chr12:101801319-101801560(-)$1	241	165	189	10.0613
GGCGGGGCUCUGGCGAGUUCUCCU	chrX:80457476-80457808(+)$1	332	77	101	10.9770
GGCCUUCGAGGUGCCUUAGGCCGC	chr9:117349948-117350298(+)$1	350	118	142	11.8754
CGUGGUGUUCUGGGGAAAACCUUU	chr11:31484720-31484953(-)$1	233	136	160	11.8603
GCUCCUCCAUCAUUGGUGGAGGAG	chr1:44441873-44442079(+)$1	206	117	141	9.7684
GUCACCGGGGUCUGCCUGGGUGAg	chr11:819639-819939(+)$1	300	247	271	12.0887
UGGGCAGGGCUCGGGUUCUGCCCG	chr7:23145317-23145755(+)$1	438	74	98	12.2270
GCGGGACCCUGGGGAGGAGCAUGC	chr9:138392437-138392698(+)$1	261	176	200	11.6048
AGAUGGCUGCCCCAGCAGUGUCCG	chr21:35287953-35288196(-)$1	243	127	151	10.2852
AGCCGCCGGGGGUGCCCUGCAAGC	chr10:97050549-97050862(-)$1	313	109	133	10.2570
AGGAAGCGGCGGGAGCUACUUCCC	chr5:149737169-149737511(+)$1	342	152	176	11.8673
GGAGGGCCCUGAGGAGAAGCCUCC	chr17:34136415-34136681(+)$1	266	239	263	11.0728
GCCGCGUGAGUUGCUUUUUGCGGC	chr1:234509218-234509523(+)$1	305	31	55	10.9947
GGGGUUACGCAAGCGCGCAGCCUU	chr15:49170229-49170552(+)$1	323	41	65	10.8431
GGUGGAGGGGACGACUCCUUCACC	chr2:220116710-220117053(-)$1	343	224	248	12.2270
CGCCGGCUGGGGUGCUGGGGGCGG	chr20:57617660-57617904(-)$1	244	21	45	10.9237
GCCGGGAGGUGAGGGCGUCCUGGC	chr16:3767338-3767560(-)$1	222	131	155	10.7241
GAAUUAUAUAUGGAUAUUUAAUUU	chr4:56496518-56496727(-)$1	209	28	52	12.7492
CAUCGCCGGUGUUUGCGGGUGGUU	chr15:91537538-91537868(-)$1	330	133	157	10.1372
CCCGGGAGCCGGGAGGCUGCGGGC	chr11:65686788-65687114(+)$1	326	122	146	10.9237
CGGGUGAGUGCGGACGCUGGCCGG	chr22:19419950-19420193(+)$1	243	177	201	10.8287
GGCGCGCCUUGUAAGAGGGCGGCC	chr6:8064395-8064727(-)$1	332	46	70	10.2616
GCGAUCGAAGGGGACUUGAGACUC	chr12:104324140-104324406(+)$1	266	115	139	10.2495
CUUUUCGCGGAUCUUCGGGAAGAA	chr7:127228457-127228720(+)$1	263	118	142	11.9016
GGGAGCAGGUGGGAAUUCGUUCCG	chr6:135502503-135502772(+)$1	269	238	262	10.4908
GCACUGGGGCUGGGGCCUGUGCCU	chr22:19950022-19950265(+)$1	243	107	131	11.4469
CCCCCGGCUUCCCGGGGCCGGGGG	chr11:118955629-118955872(+)$1	243	47	71	12.2270
GGGGUGGCUGGCGCCGGCUACGCC	chr19:18304035-18304316(+)$1	281	63	87	10.4546
GGGUGGGGUCCCGUGGCUUCCCCC	chr11:64084820-64085128(-)$1	308	173	197	10.8582
UCCUCUAGAGACAGCUUCGGGGGC	chr15:90776808-90777034(-)$1	226	171	195	11.8689
UUGUCCUAGGGUUUCCUAAACAGG	chr20:2644697-2644946(-)$1	249	197	221	9.9992
cggcggcggcggcggcggcuacgg	chr17:38974992-38975306(-)$1	314	124	148	9.8917
CUGGGCUGGCUGCUGCUGGCCGAA	chr1:11994757-11995014(+)$1	257	106	130	10.1660
CUCUGAGCUGGAGACGGCGAUGGA	chr1:153602884-153603196(+)$1	312	118	142	10.3999
GGCCCUGGUGGAGGUGCUGGGGCC	chr17:40761002-40761291(-)$1	289	68	92	12.2270
UUAGCACUGACUUCUCACUGACUU	chr6:10749754-10749976(+)$1	222	61	85	12.4427
GACGUAGCGUCGCCGCGCCAGGUC	chr9:139760532-139760827(-)$1	295	44	68	10.5755
GCCGCUGCGCAGAGGCGCGGCGGC	chr9:132597341-132597582(-)$1	241	35	59	12.2270
UCCUCCGCCGGCUACGGCGCUGCG	chr2:109335880-109336189(+)$1	309	64	88	9.6692
UGGCGUAGCGGGUGCGCUCCUCCA	chr6:150038884-150039198(-)$1	314	227	251	10.9432
AGGCCGAGGAAGAAUUCUGGUACC	chr8:125555243-125555490(+)$1	247	179	203	10.1262
CGAGGAGGCGAGUCUGUUGGGCCU	chr11:118926760-118926983(-)$1	223	139	163	11.4399
UGUUGGUGAGGGGACUCCCCGGCA	chr17:6915894-6916180(+)$1	286	181	205	10.9947
UCUGCGGGCUCCCGGGCCUACAGC	chr9:131085056-131085307(+)$1	251	115	139	9.6554
UGCUUGGGCGCCGCCGCGCGAGCG	chr17:46703453-46703842(-)$1	389	148	172	10.4222
AggcggccgcgggcgccgccgccU	chr3:63849346-63849610(-)$1	264	11	35	10.7241
GUUUCCUGUUAUCAAACCAAACUG	chr15:79231380-79231615(-)$1	235	178	202	11.1931
ACCCCUGGCUGUCUGGGCAGGGGU	chr22:41864504-41864763(-)$1	259	173	197	10.9094
UACCGGGGUUGUCUGGCCCGGGUC	chr11:66035994-66036265(+)$1	271	232	256	9.7402

#DB
(((..(((((....))))))))))	chr2:73466669-73466883(+)$1	1	17	41	10.5767
((((...(((....))))))))))	chr18:9614122-9614369(-)$1	1	109	133	10.3703
(.(((..(((....)))..)))))	chr3:49412772-49413069(-)$1	1	153	177	11.4101
(.((((.(((....))))))).).	chr19:1863307-1863649(-)$1	1	285	309	9.8077
((((((.(((....))))))))))	chr17:27071120-27071374(+)$1	1	145	169	12.4921
((.(((((((....))).)))).)	chr12:101801319-101801560(-)$1	1	165	189	10.0613
((.(((((((....))))))).))	chrX:80457476-80457808(+)$1	1	77	101	10.9770
(((((..(((....)))))))).)	chr9:117349948-117350298(+)$1	1	118	142	11.8754
((.(((.(((....))).)))...	chr11:31484720-31484953(-)$1	1	136	160	11.8603
(((((((((((...))))))))))	chr1:44441873-44442079(+)$1	1	117	141	9.7684
.(((((.(((....))).))))).	chr11:819639-819939(+)$1	1	247	271	12.0887
((((((((((....))))))))))	chr7:23145317-23145755(+)$1	1	74	98	12.2270
(((.(..(((....)))..).)))	chr9:138392437-138392698(+)$1	1	176	200	11.6048
...(((((((....))))...)))	chr21:35287953-35288196(-)$1	1	127	151	10.2852
(((.((.(((....))).))..))	chr10:97050549-97050862(-)$1	1	109	133	10.2570
)(((((.(((....))).)))))(	chr5:149737169-149737511(+)$1	1	152	176	11.8673
(((((...((....))...)))))	chr17:34136415-34136681(+)$1	1	239	263	11.0728
((((((.(((....))).))))))	chr1:234509218-234509523(+)$1	1	31	55	10.9947
((((((.(((....))).)))).)	chr15:49170229-49170552(+)$1	1	41	65	10.8431
((((((((((....))))))))))	chr2:220116710-220117053(-)$1	1	224	248	12.2270
((((..((((....)))).)))))	chr20:57617660-57617904(-)$1	1	21	45	10.9237
(((((((.((....)).)))))))	chr16:3767338-3767560(-)$1	1	131	155	10.7241
((((((.(((....))).))))))	chr4:56496518-56496727(-)$1	1	28	52	12.7492
(((((((.((....)).))))).)	chr15:91537538-91537868(-)$1	1	133	157	10.1372
((((..((((....)))).)))))	chr11:65686788-65687114(+)$1	1	122	146	10.9237
(.(((.((((....)))).))).)	chr22:19419950-19420193(+)$1	1	177	201	10.8287
(.(((.((((....))))))).))	chr6:8064395-8064727(-)$1	1	46	70	10.2616
(.(.((.(((....)))..))).)	chr12:104324140-104324406(+)$1	1	115	139	10.2495
((((((.(((....))).).))))	chr7:127228457-127228720(+)$1	1	118	142	11.9016
)(((((.(((....))).))))))	chr6:135502503-135502772(+)$1	1	238	262	10.4908
((((..((((....))))))))))	chr22:19950022-19950265(+)$1	1	107	131	11.4469
((((((((((....))))))))))	chr11:118955629-118955872(+)$1	1	47	71	12.2270
((.(((((((....))))))).))	chr19:18304035-18304316(+)$1	1	63	87	10.4546
(((..(((((....))))))))))	chr11:64084820-64085128(-)$1	1	173	197	10.8582
((((((.(((....))).))))).	chr15:90776808-90777034(-)$1	1	171	195	11.8689
((((((((((....)))....)))	chr20:2644697-2644946(-)$1	1	197	221	9.9992
(.(.(((.((....)).))).).)	chr17:38974992-38975306(-)$1	1	124	148	9.8917
((.(((((((....)))))))..)	chr1:11994757-11995014(+)$1	1	106	130	10.1660
(((((.((((....))))..))))	chr1:153602884-153603196(+)$1	1	118	142	10.3999
((((((((((....))))))))))	chr17:40761002-40761291(-)$1	1	68	92	12.2270
((((...(((....))))))))))	chr6:10749754-10749976(+)$1	1	61	85	12.4427
(((.(.((((....)))).).)))	chr9:139760532-139760827(-)$1	1	44	68	10.5755
((((((((((....))))))))))	chr9:132597341-132597582(-)$1	1	35	59	12.2270
.((..(((((....)))))..).)	chr2:109335880-109336189(+)$1	1	64	88	9.6692
(((.(.((((....)))).).)))	chr6:150038884-150039198(-)$1	1	227	251	10.9432
..(((.((((....))))))).))	chr8:125555243-125555490(+)$1	1	179	203	10.1262
(((((.((((....))))...)))	chr11:118926760-118926983(-)$1	1	139	163	11.4399
((((((.(((....))).))))))	chr17:6915894-6916180(+)$1	1	181	205	10.9947
((((.(((((....))))).))).	chr9:131085056-131085307(+)$1	1	115	139	9.6554
.(((((.(((....))).))))))	chr17:46703453-46703842(-)$1	1	148	172	10.4222
(((((((.((....)).)))))))	chr3:63849346-63849610(-)$1	1	11	35	10.7241
((((...(((....))).))))).	chr15:79231380-79231615(-)$1	1	178	202	11.1931
(((((((.((....)).)))))))	chr22:41864504-41864763(-)$1	1	173	197	10.9094
((((.(((((....))))).))).	chr11:66035994-66036265(+)$1	1	232	256	9.7402

#PSSM
g : 0.16	e : 0.16	= : 0.12	f : 0.12	d : 0.11	a : 0.03	b : 0.03	c : 0.03	[ : 0.03	i : 0.03	h : 0.03	" : 0.01	F : 0.01	! : 0.01	: : 0.01	
e : 0.24	g : 0.16	= : 0.12	[ : 0.11	f : 0.11	d : 0.05	c : 0.05	i : 0.03	b : 0.01	" : 0.01	h : 0.01	a : 0.01	! : 0.01	
e : 0.24	g : 0.16	= : 0.12	c : 0.11	[ : 0.09	f : 0.09	d : 0.05	a : 0.05	" : 0.01	h : 0.01	i : 0.01	
e : 0.22	g : 0.20	c : 0.14	= : 0.11	[ : 0.11	d : 0.07	! : 0.05	f : 0.03	h : 0.01	i : 0.01	
g : 0.16	e : 0.16	c : 0.12	! : 0.11	= : 0.11	" : 0.05	d : 0.05	a : 0.05	b : 0.03	f : 0.03	[ : 0.03	h : 0.01	i : 0.01	
e : 0.20	g : 0.12	[ : 0.12	! : 0.11	= : 0.11	" : 0.07	d : 0.05	c : 0.05	b : 0.03	f : 0.03	a : 0.01	h : 0.01	i : 0.01	
[ : 0.27	d : 0.22	e : 0.11	= : 0.11	g : 0.09	" : 0.07	! : 0.05	h : 0.01	c : 0.01	i : 0.01	
c : 0.42	d : 0.20	= : 0.11	e : 0.09	[ : 0.09	g : 0.05	" : 0.01	
c : 0.42	d : 0.20	= : 0.11	b : 0.11	e : 0.09	g : 0.05	
c : 0.42	d : 0.20	= : 0.11	b : 0.11	e : 0.09	g : 0.05	
m : 0.98	= : 0.01	
m : 0.98	l : 0.01	
m : 0.98	l : 0.01	
m : 0.98	l : 0.01	
c : 0.42	d : 0.20	= : 0.11	b : 0.11	e : 0.09	g : 0.05	
c : 0.42	d : 0.20	= : 0.11	b : 0.11	e : 0.09	g : 0.05	
c : 0.42	d : 0.20	= : 0.11	e : 0.09	] : 0.09	g : 0.05	3 : 0.01	
] : 0.25	d : 0.24	e : 0.12	g : 0.12	= : 0.11	2 : 0.05	3 : 0.01	4 : 0.01	c : 0.01	i : 0.01	
e : 0.24	g : 0.16	= : 0.11	] : 0.09	d : 0.07	2 : 0.07	c : 0.07	3 : 0.05	f : 0.03	b : 0.01	a : 0.01	4 : 0.01	i : 0.01	
g : 0.20	e : 0.18	= : 0.12	c : 0.11	d : 0.07	a : 0.05	] : 0.05	3 : 0.03	b : 0.03	f : 0.03	2 : 0.03	4 : 0.01	i : 0.01	
e : 0.22	g : 0.20	c : 0.12	= : 0.12	d : 0.07	] : 0.07	3 : 0.03	2 : 0.03	f : 0.03	b : 0.01	4 : 0.01	i : 0.01	
e : 0.24	g : 0.16	= : 0.12	c : 0.09	] : 0.09	f : 0.07	d : 0.05	a : 0.05	2 : 0.03	3 : 0.01	h : 0.01	i : 0.01	
e : 0.22	g : 0.16	] : 0.14	= : 0.12	f : 0.09	d : 0.05	c : 0.05	h : 0.03	a : 0.01	3 : 0.01	2 : 0.01	b : 0.01	i : 0.01	
g : 0.16	e : 0.12	= : 0.12	f : 0.11	d : 0.09	b : 0.05	] : 0.05	a : 0.05	: : 0.03	i : 0.03	h : 0.03	3 : 0.01	c : 0.01	D : 0.01	4 : 0.01	G : 0.01	

#score	592.4620740172645
#seq	54
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_transcript_m3_run1.txt

#BEAR
:::::::::::::::::::::::::::	chr11:2159666-2159891(-)$1	225	93	120	12.1976
:::::::::::::::::::::::::::	chr1:55617346-55617661(-)$1	315	287	314	12.1976
:::::::::::::::::::::::::::	chr1:32373807-32374099(-)$1	292	236	263	12.1976
:::::::::::::::::::::::::::	chr14:89880082-89880377(-)$1	295	0	27	12.1976
:::::::::::::::::::::::::::	chr6:155101172-155101453(+)$1	281	123	150	12.1976
:::::::::::::::::::::::::::	chr11:58385225-58385475(+)$1	250	16	43	12.1976
:::::::::::::::::::::::::GG	chr6:38096139-38096422(+)$1	283	113	140	11.3536
:::::::::::::::::::::::::::	chr2:122340038-122340319(-)$1	281	200	227	12.1976
:::::::::::::::::::::::::::	chr16:88525892-88526149(+)$1	257	193	220	12.1976
:::::::::::::::::::::::::::	chr16:11968928-11969211(-)$1	283	101	128	12.1976
:::::::::::::::::::::::::::	chr3:188295542-188295860(+)$1	318	0	27	12.1976
:::::::::::::::::::::::::::	chr5:37576122-37576457(+)$1	335	0	27	12.1976
c::::::::::::::::::::::::::	chr3:195440938-195441170(+)$1	232	121	148	11.2430
:::::::::::::::::::::::::::	chr22:25591023-25591299(+)$1	276	112	139	12.1976
:::::::::::::::::::::::::::	chr5:39006635-39006924(-)$1	289	37	64	12.1976
:::::::::::::::::::::::::::	chr22:50897148-50897446(-)$1	298	140	167	12.1976
:::::::::::::::::::::::::::	chr19:47698815-47699078(+)$1	263	96	123	12.1976
:::::::::::::::::::::::::::	chr16:11966659-11966887(-)$1	228	196	223	12.1976
:::::::::::::::::::::::::::	chr5:171402897-171403213(-)$1	316	125	152	12.1976
:::::::::::::::::::::::::::	chr2:242172236-242172537(-)$1	301	116	143	12.1976
:::::::::::::::::::::::::::	chr20:35974278-35974591(+)$1	313	218	245	12.1976
:::::::::::::::::::::::::::	chr16:89918923-89919216(+)$1	293	109	136	12.1976
:::::::::::::::::::::::::::	chrX:39947579-39947869(-)$1	290	111	138	12.1976
:::::::::::::::::::::::::::	chr22:47415726-47416051(+)$1	325	0	27	12.1976
:::::::::::::::::::::::::::	chr19:39410746-39411061(-)$1	315	0	27	12.1976
:::::::::::::::::::::::::::	chr19:8313638-8313896(+)$1	258	0	27	12.1976
:::::::::::::::::::::::::::	chr9:132900691-132900955(+)$1	264	23	50	12.1976
:::::::::::::::::::::::::::	chr2:101601647-101601931(+)$1	284	0	27	12.1976
:::::::::::::::::::::::::::	chr11:107727706-107727988(-)$1	282	17	44	12.1976
:::::::::::::::::::::::::::	chr20:21188005-21188269(+)$1	264	52	79	12.1976
:::::::::::::::::::::::::::	chr14:51264474-51264847(-)$1	373	336	363	12.1976
:::::::::::::::::::::::::::	chr13:52025877-52026129(-)$1	252	85	112	12.1976
:::::::::::::::::::::::::::	chr16:8956301-8956561(-)$1	260	129	156	12.1976
:::::::::::::::::::::::::::	chr15:99388498-99388732(+)$1	234	98	125	12.1976
:::::::::::::::::::::::::::	chr5:56177857-56178120(+)$1	263	75	102	12.1976
:::::::::::::::::::::::::::	chr2:101495820-101496108(+)$1	288	106	133	12.1976
:::::::::::::::::::::::::::	chr6:34813777-34814070(+)$1	293	61	88	12.1976
:::::::::::::::::::::::::::	chr20:3523109-3523448(+)$1	339	94	121	12.1976
::::::::::::::::::::::BB{CC	chr14:94844594-94844854(-)$1	260	0	27	10.9225
:::::::::::::::::::::::::::	chr19:2200586-2200871(+)$1	285	232	259	12.1976
:::::::::::::::::::::::::::	chr11:2159729-2159979(-)$1	250	21	48	12.1976
:::::::::::::::::::::::::::	chr20:57476855-57477117(+)$1	262	96	123	12.1976
DD:::::::::::::::::::::::::	chr5:125828858-125829164(+)$1	306	156	183	10.9157
:::::::::::::::::::::::::::	chr11:57585277-57585524(+)$1	247	34	61	12.1976
:::::::::::::::::::::::::::	chr3:122844949-122845322(+)$1	373	95	122	12.1976
:::::::::::::::::::::::::::	chr19:41818984-41819271(+)$1	287	148	175	12.1976
:::::::::::::::::::::::::::	chr8:21851361-21851670(+)$1	309	62	89	12.1976
::::::::::::::::::::::::::G	chr2:216974288-216974588(+)$1	300	176	203	11.8054
:::::::::::::::::::::::::::	chr6:37972098-37972388(+)$1	290	72	99	12.1976
:::::::::::::::::::::::::::	chr11:115261037-115261309(-)$1	272	109	136	12.1976
:::::::::::::::::::::::::::	chr14:56089595-56089911(+)$1	316	120	147	12.1976
:::::::::::::::::::::::::::	chr4:71787117-71787377(+)$1	260	60	87	12.1976
:::::::::::::::::::::::::::	chr7:43941499-43941854(-)$1	355	85	112	12.1976
:::::::::::::::::::::::::::	chr3:49568966-49569228(+)$1	262	229	256	12.1976
:::::::::::::::::::::::::::	chr13:42894503-42894832(+)$1	329	128	155	12.1976
::::::::::::::::::::::::::G	chr10:43892169-43892455(-)$1	286	143	170	11.8054
::::::::::::::::::::::::::E	chr7:6214740-6214981(-)$1	241	0	27	11.7437
:::::::::::::::::::::::::::	chrX:148561653-148561933(-)$1	280	100	127	12.1976
:::::::::::::::::::::::::::	chrX:47071004-47071250(+)$1	246	149	176	12.1976
:::::::::::::::::::::::::::	chr20:48329292-48329534(-)$1	242	140	167	12.1976
:::::::::::::::::::::::::::	chr5:64159138-64159462(+)$1	324	140	167	12.1976
:::::::::::::::::::::::::::	chr9:139297550-139297840(-)$1	290	200	227	12.1976

#otherMatches

#Seq PSSM
cccccccuuucacguucacucugucuc	chr11:2159666-2159891(-)$1	225	93	120	12.1976
CUAUACCUUCCACUGUCUACCCCAAUC	chr1:55617346-55617661(-)$1	315	287	314	12.1976
ACUUUUAGAUaaaaaaaaaaaaaaaac	chr1:32373807-32374099(-)$1	292	236	263	12.1976
cUAUGUCUUUGCUUUUAAAUAUGUUCA	chr14:89880082-89880377(-)$1	295	0	27	12.1976
ucaccuccuccuccccaucccuaaucc	chr6:155101172-155101453(+)$1	281	123	150	12.1976
AAAAAAAAAUCUAAAGCAUUUAAAAUC	chr11:58385225-58385475(+)$1	250	16	43	12.1976
cacccccuucccacccuuucccccuga	chr6:38096139-38096422(+)$1	283	113	140	11.3536
ccuuucuuucugucuuucuuucucucu	chr2:122340038-122340319(-)$1	281	200	227	12.1976
CUuccuccucccccuccuccccuuccc	chr16:88525892-88526149(+)$1	257	193	220	12.1976
AUAuuccuguccuuuuccuuucccuuu	chr16:11968928-11969211(-)$1	283	101	128	12.1976
uccuucguuccuuccuuccuuccuucu	chr3:188295542-188295860(+)$1	318	0	27	12.1976
agcagauuuccuuccuuccuuccuucc	chr5:37576122-37576457(+)$1	335	0	27	12.1976
cccguccuccagcccuaacuccucccu	chr3:195440938-195441170(+)$1	232	121	148	11.2430
UCCCCCUCAUUUCUCUUCCUCCUCACC	chr22:25591023-25591299(+)$1	276	112	139	12.1976
cuccccuccucuccucuccccuccucu	chr5:39006635-39006924(-)$1	289	37	64	12.1976
UUUUUCCUCAUCCCCCACACUCCACCC	chr22:50897148-50897446(-)$1	298	140	167	12.1976
gucccuuccccuuucccuuucccuucc	chr19:47698815-47699078(+)$1	263	96	123	12.1976
CUACAAUAAUGAAAACCUACAGGAAUU	chr16:11966659-11966887(-)$1	228	196	223	12.1976
uuccucccuuccuccccucccucucuc	chr5:171402897-171403213(-)$1	316	125	152	12.1976
CUUCCCCUUCCCCUUCCCCUUCUUCCU	chr2:242172236-242172537(-)$1	301	116	143	12.1976
uccuccuccCUUUCUCUCUCGAUCUGU	chr20:35974278-35974591(+)$1	313	218	245	12.1976
cccgucuuccguccucccucucacccc	chr16:89918923-89919216(+)$1	293	109	136	12.1976
CUCCcucccuuucucuccuccucuccc	chrX:39947579-39947869(-)$1	290	111	138	12.1976
cuccauccucuccucucucuuaacucu	chr22:47415726-47416051(+)$1	325	0	27	12.1976
uucuaacucugccuuccccaccccgcg	chr19:39410746-39411061(-)$1	315	0	27	12.1976
ggauggauggauggaugauggguggau	chr19:8313638-8313896(+)$1	258	0	27	12.1976
ccuucccccuuccccauccccuccccc	chr9:132900691-132900955(+)$1	264	23	50	12.1976
uuccauccagccaucaucuauccaucc	chr2:101601647-101601931(+)$1	284	0	27	12.1976
Uucccucccucccucccucccuccuuc	chr11:107727706-107727988(-)$1	282	17	44	12.1976
UUUCAGAcccccuccuccucaucuucc	chr20:21188005-21188269(+)$1	264	52	79	12.1976
ucucugucucauucucucuccauaucu	chr14:51264474-51264847(-)$1	373	336	363	12.1976
cccccauucacccuucauuaugcuccc	chr13:52025877-52026129(-)$1	252	85	112	12.1976
ccuucucccccuauccccuucugucug	chr16:8956301-8956561(-)$1	260	129	156	12.1976
UCUCUcuccuccuccuccccucccucc	chr15:99388498-99388732(+)$1	234	98	125	12.1976
CCUCUCCUUUAUCUCAUCAUUCCCAAU	chr5:56177857-56178120(+)$1	263	75	102	12.1976
uccuuugaacucuacuuccuccuuuuc	chr2:101495820-101496108(+)$1	288	106	133	12.1976
cacuuccauuucuuuucccuccccucc	chr6:34813777-34814070(+)$1	293	61	88	12.1976
uuccaccuccccuuccccuuucuccuu	chr20:3523109-3523448(+)$1	339	94	121	12.1976
UUAAUGAUUGAACAAAAUACCAAGUCU	chr14:94844594-94844854(-)$1	260	0	27	10.9225
ucucguccuccccgcauuccucguccu	chr19:2200586-2200871(+)$1	285	232	259	12.1976
ccuagccuccgacucccucccccccuc	chr11:2159729-2159979(-)$1	250	21	48	12.1976
UCUUGCUAAUUAACCUCCCUUCGCCUU	chr20:57476855-57477117(+)$1	262	96	123	12.1976
UACACCCCUCUUAACGACUUUCAAACU	chr5:125828858-125829164(+)$1	306	156	183	10.9157
AUUAUUAUUAUUUCUAAUCCUUUUCCU	chr11:57585277-57585524(+)$1	247	34	61	12.1976
CUCCUACUCCAUCCUCCCACCCCUCUC	chr3:122844949-122845322(+)$1	373	95	122	12.1976
UCCCCAGUCCCUACCUCUCAUUUCUCU	chr19:41818984-41819271(+)$1	287	148	175	12.1976
GUGucucucucucucucucucucucuc	chr8:21851361-21851670(+)$1	309	62	89	12.1976
uccccacccgccuccccucucucucuc	chr2:216974288-216974588(+)$1	300	176	203	11.8054
UAAAUUUUUCUUUUCUUUUUucuuucu	chr6:37972098-37972388(+)$1	290	72	99	12.1976
ucuccuucucucccucuguccccuacu	chr11:115261037-115261309(-)$1	272	109	136	12.1976
uccuaucuccccuuuccucccaaaccc	chr14:56089595-56089911(+)$1	316	120	147	12.1976
uuuucuucucucuucucuucucucccc	chr4:71787117-71787377(+)$1	260	60	87	12.1976
ccucuccaccaucuucuccucccccuu	chr7:43941499-43941854(-)$1	355	85	112	12.1976
ACCCCUCCCACAACCACCACCAAGAAG	chr3:49568966-49569228(+)$1	262	229	256	12.1976
uccucccacucucuucccccucccccc	chr13:42894503-42894832(+)$1	329	128	155	12.1976
ACCCUCCCGUCCCUGCCCCCACUCUCC	chr10:43892169-43892455(-)$1	286	143	170	11.8054
CUACUUCAUCAGAAUAUUGUGCUUCAG	chr7:6214740-6214981(-)$1	241	0	27	11.7437
CUUCUCCCUUUCUUUCCAAGUAGUUUA	chrX:148561653-148561933(-)$1	280	100	127	12.1976
UUUACCUUCCUUAUAUCUCCCCCGUCU	chrX:47071004-47071250(+)$1	246	149	176	12.1976
UCCCCAUCUCCCCCCCCCCCACCUCGC	chr20:48329292-48329534(-)$1	242	140	167	12.1976
cucccuuucccugugcucuucccaucc	chr5:64159138-64159462(+)$1	324	140	167	12.1976
Acccuccccuuccuuccccacccccac	chr9:139297550-139297840(-)$1	290	200	227	12.1976

#DB
...........................	chr11:2159666-2159891(-)$1	1	93	120	12.1976
...........................	chr1:55617346-55617661(-)$1	1	287	314	12.1976
...........................	chr1:32373807-32374099(-)$1	1	236	263	12.1976
...........................	chr14:89880082-89880377(-)$1	1	0	27	12.1976
...........................	chr6:155101172-155101453(+)$1	1	123	150	12.1976
...........................	chr11:58385225-58385475(+)$1	1	16	43	12.1976
.........................))	chr6:38096139-38096422(+)$1	1	113	140	11.3536
...........................	chr2:122340038-122340319(-)$1	1	200	227	12.1976
...........................	chr16:88525892-88526149(+)$1	1	193	220	12.1976
...........................	chr16:11968928-11969211(-)$1	1	101	128	12.1976
...........................	chr3:188295542-188295860(+)$1	1	0	27	12.1976
...........................	chr5:37576122-37576457(+)$1	1	0	27	12.1976
)..........................	chr3:195440938-195441170(+)$1	1	121	148	11.2430
...........................	chr22:25591023-25591299(+)$1	1	112	139	12.1976
...........................	chr5:39006635-39006924(-)$1	1	37	64	12.1976
...........................	chr22:50897148-50897446(-)$1	1	140	167	12.1976
...........................	chr19:47698815-47699078(+)$1	1	96	123	12.1976
...........................	chr16:11966659-11966887(-)$1	1	196	223	12.1976
...........................	chr5:171402897-171403213(-)$1	1	125	152	12.1976
...........................	chr2:242172236-242172537(-)$1	1	116	143	12.1976
...........................	chr20:35974278-35974591(+)$1	1	218	245	12.1976
...........................	chr16:89918923-89919216(+)$1	1	109	136	12.1976
...........................	chrX:39947579-39947869(-)$1	1	111	138	12.1976
...........................	chr22:47415726-47416051(+)$1	1	0	27	12.1976
...........................	chr19:39410746-39411061(-)$1	1	0	27	12.1976
...........................	chr19:8313638-8313896(+)$1	1	0	27	12.1976
...........................	chr9:132900691-132900955(+)$1	1	23	50	12.1976
...........................	chr2:101601647-101601931(+)$1	1	0	27	12.1976
...........................	chr11:107727706-107727988(-)$1	1	17	44	12.1976
...........................	chr20:21188005-21188269(+)$1	1	52	79	12.1976
...........................	chr14:51264474-51264847(-)$1	1	336	363	12.1976
...........................	chr13:52025877-52026129(-)$1	1	85	112	12.1976
...........................	chr16:8956301-8956561(-)$1	1	129	156	12.1976
...........................	chr15:99388498-99388732(+)$1	1	98	125	12.1976
...........................	chr5:56177857-56178120(+)$1	1	75	102	12.1976
...........................	chr2:101495820-101496108(+)$1	1	106	133	12.1976
...........................	chr6:34813777-34814070(+)$1	1	61	88	12.1976
...........................	chr20:3523109-3523448(+)$1	1	94	121	12.1976
......................((.((	chr14:94844594-94844854(-)$1	1	0	27	10.9225
...........................	chr19:2200586-2200871(+)$1	1	232	259	12.1976
...........................	chr11:2159729-2159979(-)$1	1	21	48	12.1976
...........................	chr20:57476855-57477117(+)$1	1	96	123	12.1976
((.........................	chr5:125828858-125829164(+)$1	1	156	183	10.9157
...........................	chr11:57585277-57585524(+)$1	1	34	61	12.1976
...........................	chr3:122844949-122845322(+)$1	1	95	122	12.1976
...........................	chr19:41818984-41819271(+)$1	1	148	175	12.1976
...........................	chr8:21851361-21851670(+)$1	1	62	89	12.1976
..........................(	chr2:216974288-216974588(+)$1	1	176	203	11.8054
...........................	chr6:37972098-37972388(+)$1	1	72	99	12.1976
...........................	chr11:115261037-115261309(-)$1	1	109	136	12.1976
...........................	chr14:56089595-56089911(+)$1	1	120	147	12.1976
...........................	chr4:71787117-71787377(+)$1	1	60	87	12.1976
...........................	chr7:43941499-43941854(-)$1	1	85	112	12.1976
...........................	chr3:49568966-49569228(+)$1	1	229	256	12.1976
...........................	chr13:42894503-42894832(+)$1	1	128	155	12.1976
..........................)	chr10:43892169-43892455(-)$1	1	143	170	11.8054
..........................(	chr7:6214740-6214981(-)$1	1	0	27	11.7437
...........................	chrX:148561653-148561933(-)$1	1	100	127	12.1976
...........................	chrX:47071004-47071250(+)$1	1	149	176	12.1976
...........................	chr20:48329292-48329534(-)$1	1	140	167	12.1976
...........................	chr5:64159138-64159462(+)$1	1	140	167	12.1976
...........................	chr9:139297550-139297840(-)$1	1	200	227	12.1976

#PSSM
: : 0.96	c : 0.01	D : 0.01	
: : 0.98	D : 0.01	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.98	B : 0.01	
: : 0.98	B : 0.01	
: : 0.98	{ : 0.01	
: : 0.96	G : 0.01	C : 0.01	
: : 0.91	G : 0.04	C : 0.01	E : 0.01	

#score	750.6624452972998
#seq	62
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_CDS_m2_run1.txt

#BEAR
fff[annnnna]ffff	chr19:1460940-1461181(-)$1	241	85	101	8.9973
e!!bbnnnnnbb333e	chr21:46396551-46396835(+)$1	284	211	227	10.0121
cccccnnnnnccc]cc	chr19:1584474-1584752(-)$1	278	204	220	10.6084
[ddddnnnnnddddad	chr19:1581102-1581368(-)$1	266	90	106	8.6752
a[cccnnnnnccca66	chr16:2550236-2550531(+)$1	295	80	96	9.6949
%%cccnnnnnccc444	chr7:4799037-4799284(+)$1	247	84	100	9.4191
iiiiinnnnniiiiii	chr19:6413391-6413709(-)$1	318	27	43	9.5024
b[cccoooooocccbb	chr19:47778235-47778490(+)$1	255	64	80	6.1820
ee[bbnnnnnbb]eee	chr11:66392950-66393214(+)$1	264	219	235	9.3306
[cccoooooocccddd	chr1:156219556-156219820(-)$1	264	145	161	6.5805
fffffnnnnnffffff	chr19:1585019-1585292(-)$1	273	85	101	8.7525
###bbnnnnnbb4444	chr12:120534784-120535015(-)$1	231	179	195	9.7689
eeebbnnnnnbb]eee	chr9:130269177-130269414(-)$1	237	144	160	9.1852
cccccnnnnnccc]cc	chrX:118925436-118925683(-)$1	247	204	220	10.6084
eecccnnnnnccc333	chr11:64894264-64894588(+)$1	324	229	245	10.7122
gggggnnnnngggggg	chr16:31501591-31501871(-)$1	280	261	277	9.4793
eeeeennnnneeeee5	chr9:136208440-136208722(-)$1	282	217	233	7.9679
cccccclllccc333c	chr17:73314715-73314966(-)$1	251	215	231	6.2011
gggggnnnnngggggg	chr19:7535080-7535366(+)$1	286	83	99	9.4793
cccbbnnnnnbb]ccc	chr9:140352013-140352266(-)$1	253	78	94	9.6665
fffffnnnnnffffff	chr19:3543851-3544076(-)$1	225	159	175	8.7525
gggggooooooggggg	chr17:47126691-47126970(+)$1	279	233	249	6.0446
[cccooooooccc]cc	chr17:79890698-79890962(-)$1	264	58	74	7.2392
!!cccnnnnnccc22c	chr19:8468333-8468646(+)$1	313	211	227	10.4355
[ddddnnnnnddddcc	chr20:61919625-61919947(+)$1	322	270	286	8.7761
ffcccnnnnnccc]ff	chr19:3543253-3543523(-)$1	270	13	29	10.2978
bb[bbnnnnnbb]bbe	chr12:120534715-120534967(-)$1	252	98	114	8.4673
bcccooooooccc]bb	chr19:45854170-45854400(-)$1	230	1	17	6.4872
eeeeennnnneeeeed	chr1:11849358-11849599(-)$1	241	42	58	8.5275
dd[bbnnnnnbb22dd	chr17:46620941-46621206(-)$1	265	90	106	8.9414
##cccnnnnnccc]bb	chr17:46620728-46621034(-)$1	306	128	144	10.2525
ddd[annnnna]dddd	chr17:73841813-73842170(-)$1	357	77	93	8.6551
eeeeennnnneeeee2	chr19:51301519-51301788(-)$1	269	40	56	8.3799
a[cccnnnnnccc]a9	chr17:79826162-79826493(-)$1	331	22	38	10.2060

#otherMatches

#Seq PSSM
GCACCUUCUUGCUGUU	chr19:1460940-1461181(-)$1	241	85	101	8.9973
CAAGUAGAGAGCGCCG	chr21:46396551-46396835(+)$1	284	211	227	10.0121
GCCGCGCCAGGUGAGC	chr19:1584474-1584752(-)$1	278	204	220	10.6084
UGCCUGGCAGGGGUGG	chr19:1581102-1581368(-)$1	266	90	106	8.6752
GAGCUGACCAAGCCCC	chr16:2550236-2550531(+)$1	295	80	96	9.6949
CUGCCAACUCGGCCAA	chr7:4799037-4799284(+)$1	247	84	100	9.4191
UAAAAUAAACUUUUAA	chr19:6413391-6413709(-)$1	318	27	43	9.5024
CUAGCUGCCGUGCUGC	chr19:47778235-47778490(+)$1	255	64	80	6.1820
UCUGCCCCCAGCUGGG	chr11:66392950-66393214(+)$1	264	219	235	9.3306
GCCCCACCUAGGGCUG	chr1:156219556-156219820(-)$1	264	145	161	6.5805
CGGGAAGAAGUUCCGC	chr19:1585019-1585292(-)$1	273	85	101	8.7525
CCUCCUCCCCGGCCAA	chr12:120534784-120535015(-)$1	231	179	195	9.7689
CAGCAUCUCCUGCCUG	chr9:130269177-130269414(-)$1	237	144	160	9.1852
CCAGGAAAUGCCUGGG	chrX:118925436-118925683(-)$1	247	204	220	10.6084
UGGCUAAGACAGCUuu	chr11:64894264-64894588(+)$1	324	229	245	10.7122
UGCAGUUAGUUUGCGG	chr16:31501591-31501871(-)$1	280	261	277	9.4793
AGCUUACGGGAGGCUG	chr9:136208440-136208722(-)$1	282	217	233	7.9679
CCUACCGAUGGUCCCA	chr17:73314715-73314966(-)$1	251	215	231	6.2011
GAAGACGUCAUCUUCU	chr19:7535080-7535366(+)$1	286	83	99	9.4793
GAGUGUACACCAUCUC	chr9:140352013-140352266(-)$1	253	78	94	9.6665
GUGCCGGGCGGGCGCU	chr19:3543851-3544076(-)$1	225	159	175	8.7525
CAGGUUUGCCCACUUG	chr17:47126691-47126970(+)$1	279	233	249	6.0446
GCCCAGAACAGGGGUG	chr17:79890698-79890962(-)$1	264	58	74	7.2392
CCCUCCCAGUGAGCUC	chr19:8468333-8468646(+)$1	313	211	227	10.4355
CUGAGCUGUUCUCAGU	chr20:61919625-61919947(+)$1	322	270	286	8.7761
GGCAGGCCCGCUGCCC	chr19:3543253-3543523(-)$1	270	13	29	10.2978
GUUGGACCAGCCCGCC	chr12:120534715-120534967(-)$1	252	98	114	8.4673
GGUCUCUUCUGACACC	chr19:45854170-45854400(-)$1	230	1	17	6.4872
UUCCUUCCCUGGGAAG	chr1:11849358-11849599(-)$1	241	42	58	8.5275
CCUGCAGAUGGCCUGG	chr17:46620941-46621206(-)$1	265	90	106	8.9414
AAGCGGCAGACGCAGC	chr17:46620728-46621034(-)$1	306	128	144	10.2525
AGAGAAUGCAUGUCUG	chr17:73841813-73842170(-)$1	357	77	93	8.6551
GCCUGUUACCCAGGUC	chr19:51301519-51301788(-)$1	269	40	56	8.3799
GUGCCCCCCAGGUUCU	chr17:79826162-79826493(-)$1	331	22	38	10.2060

#DB
(((.(.....).))))	chr19:1460940-1461181(-)$1	1	85	101	8.9973
(..((.....))...)	chr21:46396551-46396835(+)$1	1	211	227	10.0121
(((((.....))).))	chr19:1584474-1584752(-)$1	1	204	220	10.6084
.((((.....))))))	chr19:1581102-1581368(-)$1	1	90	106	8.6752
(.(((.....))))..	chr16:2550236-2550531(+)$1	1	80	96	9.6949
..(((.....)))...	chr7:4799037-4799284(+)$1	1	84	100	9.4191
(((((.....))))))	chr19:6413391-6413709(-)$1	1	27	43	9.5024
(.(((......)))))	chr19:47778235-47778490(+)$1	1	64	80	6.1820
((.((.....)).)))	chr11:66392950-66393214(+)$1	1	219	235	9.3306
.(((......))))))	chr1:156219556-156219820(-)$1	1	145	161	6.5805
(((((.....))))))	chr19:1585019-1585292(-)$1	1	85	101	8.7525
...((.....))....	chr12:120534784-120535015(-)$1	1	179	195	9.7689
(((((.....)).)))	chr9:130269177-130269414(-)$1	1	144	160	9.1852
(((((.....))).))	chrX:118925436-118925683(-)$1	1	204	220	10.6084
(((((.....)))...	chr11:64894264-64894588(+)$1	1	229	245	10.7122
(((((.....))))))	chr16:31501591-31501871(-)$1	1	261	277	9.4793
(((((.....))))).	chr9:136208440-136208722(-)$1	1	217	233	7.9679
((((((...)))...)	chr17:73314715-73314966(-)$1	1	215	231	6.2011
(((((.....))))))	chr19:7535080-7535366(+)$1	1	83	99	9.4793
(((((.....)).)))	chr9:140352013-140352266(-)$1	1	78	94	9.6665
(((((.....))))))	chr19:3543851-3544076(-)$1	1	159	175	8.7525
(((((......)))))	chr17:47126691-47126970(+)$1	1	233	249	6.0446
.(((......))).))	chr17:79890698-79890962(-)$1	1	58	74	7.2392
..(((.....)))..)	chr19:8468333-8468646(+)$1	1	211	227	10.4355
.((((.....))))))	chr20:61919625-61919947(+)$1	1	270	286	8.7761
(((((.....))).))	chr19:3543253-3543523(-)$1	1	13	29	10.2978
((.((.....)).)))	chr12:120534715-120534967(-)$1	1	98	114	8.4673
((((......))).))	chr19:45854170-45854400(-)$1	1	1	17	6.4872
(((((.....)))))(	chr1:11849358-11849599(-)$1	1	42	58	8.5275
((.((.....))..))	chr17:46620941-46621206(-)$1	1	90	106	8.9414
..(((.....))).))	chr17:46620728-46621034(-)$1	1	128	144	10.2525
(((.(.....).))))	chr17:73841813-73842170(-)$1	1	77	93	8.6551
(((((.....))))).	chr19:51301519-51301788(-)$1	1	40	56	8.3799
(.(((.....))).).	chr17:79826162-79826493(-)$1	1	22	38	10.2060

#PSSM
e : 0.20	f : 0.11	c : 0.11	[ : 0.11	b : 0.08	g : 0.08	a : 0.05	# : 0.05	d : 0.05	% : 0.02	i : 0.02	! : 0.02	
c : 0.20	e : 0.17	f : 0.11	d : 0.11	[ : 0.08	g : 0.08	! : 0.05	# : 0.05	% : 0.02	i : 0.02	b : 0.02	
c : 0.44	e : 0.11	f : 0.08	d : 0.08	[ : 0.08	g : 0.08	! : 0.02	i : 0.02	# : 0.02	
c : 0.41	b : 0.20	g : 0.08	e : 0.08	[ : 0.05	d : 0.05	f : 0.05	i : 0.02	
c : 0.32	b : 0.20	o : 0.08	g : 0.08	e : 0.08	a : 0.05	d : 0.05	f : 0.05	i : 0.02	
n : 0.82	o : 0.14	c : 0.02	
n : 0.82	o : 0.14	l : 0.02	
n : 0.82	o : 0.14	l : 0.02	
n : 0.82	o : 0.14	l : 0.02	
n : 0.82	o : 0.14	c : 0.02	
c : 0.38	b : 0.20	e : 0.08	a : 0.05	d : 0.05	o : 0.05	f : 0.05	g : 0.05	i : 0.02	
c : 0.41	b : 0.20	g : 0.08	e : 0.08	] : 0.05	d : 0.05	f : 0.05	i : 0.02	
c : 0.38	] : 0.11	f : 0.08	d : 0.08	g : 0.08	e : 0.08	3 : 0.05	i : 0.02	4 : 0.02	2 : 0.02	
] : 0.20	e : 0.14	d : 0.11	f : 0.08	3 : 0.08	g : 0.08	4 : 0.05	c : 0.05	2 : 0.05	a : 0.02	i : 0.02	b : 0.02	
c : 0.14	e : 0.14	f : 0.11	b : 0.11	3 : 0.08	d : 0.08	g : 0.08	a : 0.05	4 : 0.05	6 : 0.02	i : 0.02	2 : 0.02	
c : 0.20	d : 0.14	f : 0.11	e : 0.11	b : 0.08	g : 0.08	4 : 0.05	6 : 0.02	i : 0.02	3 : 0.02	5 : 0.02	2 : 0.02	9 : 0.02	

#score	302.28795676492365
#seq	34
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_transcript_m3_run1.txt

#BEAR
eeeeemmmmeeeee::I	chr6:10777705-10778010(+)$1	305	280	297	8.4673
eeeeemmmmeeeee22c	chr22:19887055-19887337(-)$1	282	191	208	10.8759
eecccmmmmccc]eeee	chr16:88580954-88581294(+)$1	340	299	316	6.7508
!eeeeellleeeee22e	chr5:137896644-137896854(-)$1	210	38	55	8.9536
[ddddmmmmdddd]fff	chr8:101316557-101316848(-)$1	291	40	57	6.7932
[eeeeellleeeee]ff	chr19:1165667-1165883(-)$1	216	98	115	8.9015
cddddmmmmdddd]ccc	chr14:45579989-45580275(+)$1	286	2	19	7.1089
eeeeeooooooeeeee]	chr17:80107466-80107717(-)$1	251	199	216	8.2295
eeeeemmmmeeeee:::	chr9:139621136-139621359(-)$1	223	4	21	8.9907
[ddddmmmmdddd]ccc	chr2:97532373-97532608(-)$1	235	108	125	7.3697
eeeeeooooooeeeeed	chr17:18965297-18965549(+)$1	252	12	29	8.1844
eeebbmmmmbb]eeeee	chr17:48827967-48828254(+)$1	287	141	158	6.7309
eeeeemmmmeeeee:::	chr16:88960383-88960684(-)$1	301	0	17	8.9907
eeeeennnnneeeeea]	chr2:86362986-86363215(+)$1	229	82	99	7.8464
cddddmmmmdddd]ccc	chr18:47811623-47811892(-)$1	269	16	33	7.1089
eeeeemmmmeeeeebbf	chr19:54971466-54971695(+)$1	229	40	57	10.2507
[eeeeellleeeee]bb	chr1:28832474-28832697(+)$1	223	200	217	8.9610
eeeeemmmmeeeee:::	chr19:49994071-49994290(+)$1	219	194	211	8.9907
eeeeemmmmeeeeebb[	chr15:93426437-93426697(+)$1	260	105	122	10.1668
!ddddmmmmdddd333e	chr19:1417447-1417704(+)$1	257	65	82	7.4824
eeeeemmmmeeeee]cc	chr13:92000338-92000615(+)$1	277	167	184	11.0810
eeeeemmmmeeeeebb]	chr19:10220351-10220606(+)$1	255	98	115	10.4169
eeeeemmmmeeeeeddd	chr17:37076016-37076317(+)$1	301	192	209	10.5101
[eeeeellleeeee]cc	chr7:1492362-1492636(-)$1	274	47	64	9.3398
!eeeeellleeeee333	chr15:66793512-66793735(-)$1	223	108	125	9.3710
eeeeemmmmeeeee:::	chrX:48677279-48677553(+)$1	274	5	22	8.9907
eeeeemmmmeeeee:::	chr11:62620339-62620551(-)$1	212	50	67	8.9907
eeeeeooooooeeeee4	chr18:20954166-20954481(-)$1	315	173	190	8.2185
eeeeemmmmeeeeeddd	chr12:6619499-6619713(+)$1	214	147	164	10.5101
eeeeemmmmeeeee]cc	chr19:49607533-49607782(+)$1	249	214	231	11.0810
eeeeennnnneeeee33	chr4:878268-878543(-)$1	275	186	203	7.9318
!eeeeellleeeeeccc	chr7:5569351-5569625(-)$1	274	144	161	9.0360
eeeee4444eeeee]bb	chr19:2271429-2271665(+)$1	236	50	67	8.1335
[ddddmmmmddddeeee	chr2:232320460-232320680(-)$1	220	127	144	7.4603
!ddddmmmmdddd]bb]	chr14:21860268-21860514(-)$1	246	194	211	6.9875
eeeeemmmmeeeee]hh	chr19:7704938-7705242(+)$1	304	46	63	10.3909
eeeeemmmmeeeeeddd	chr12:6619483-6619697(+)$1	214	163	180	10.5101
eeeeemmmmeeeee333	chr2:64880549-64880827(-)$1	278	105	122	11.1231
eeeeemmmmeeeee:dd	chr19:1411967-1412211(+)$1	244	141	158	10.0912
eeeeemmmmeeeee22a	chr11:62622040-62622250(-)$1	210	164	181	10.8487
eeeeemmmmeeeee]cc	chr3:169482515-169482779(-)$1	264	201	218	11.0810
eeeeemmmmeeeee22c	chr16:12354775-12355030(+)$1	255	161	178	10.8759
gggggmmmmggggggg]	chr19:577275-577526(+)$1	251	56	73	6.0803
!ddddmmmmdddd]ddd	chr1:173836735-173836980(-)$1	245	165	182	7.0806
eeeeellleeeeedddd	chr7:3038694-3038938(+)$1	244	50	67	8.1569
eeeeemmmmeeeee22d	chr22:32020498-32020745(-)$1	247	50	67	10.7710
eeeeemmmmeeeee:EE	chr11:66391440-66391702(+)$1	262	109	126	8.8049
eeeeeooooooeeeee:	chr5:138614446-138614671(+)$1	225	0	17	7.6265
eeeeemmmmeeeeeDDD	chr20:47895421-47895636(+)$1	215	141	158	8.5642
eeeeennnnneeeeedd	chr12:98993315-98993569(+)$1	254	61	78	7.6773
eeeeemmmmeeeee]cc	chr16:12355819-12356127(+)$1	308	87	104	11.0810
eddddmmmmdddd333e	chr3:184043381-184043591(+)$1	210	84	101	7.7090
eeeeeooooooeeeee:	chr20:17943419-17943675(-)$1	256	59	76	7.6265
eeeeemmmmeeeee22a	chr4:79697816-79698103(+)$1	287	27	44	10.8487
[eeeeellleeeee]ff	chr19:1165523-1165786(-)$1	263	163	180	8.9015

#otherMatches

#Seq PSSM
cucagccuccugaguag	chr6:10777705-10778010(+)$1	305	280	297	8.4673
CGCAGUGUCCUGUGCUG	chr22:19887055-19887337(-)$1	282	191	208	10.8759
aggccuugggguacugg	chr16:88580954-88581294(+)$1	340	299	316	6.7508
CUCUUUGACAAAGAUUU	chr5:137896644-137896854(-)$1	210	38	55	8.9536
AUAGGCAUCCUUAAAUA	chr8:101316557-101316848(-)$1	291	40	57	6.7932
gggaucuggggucugag	chr19:1165667-1165883(-)$1	216	98	115	8.9015
UGCUUUUGGAAGCAAUC	chr14:45579989-45580275(+)$1	286	2	19	7.1089
GGCCUGGUCGGAGGCCA	chr17:80107466-80107717(-)$1	251	199	216	8.2295
GGAUUAUUUAGUCUUCA	chr9:139621136-139621359(-)$1	223	4	21	8.9907
GUGGGGGUGCCCAGCCC	chr2:97532373-97532608(-)$1	235	108	125	7.3697
gagagguagcguuuucu	chr17:18965297-18965549(+)$1	252	12	29	8.1844
GCAGCGUAAGUAUGCAC	chr17:48827967-48828254(+)$1	287	141	158	6.7309
gugcauguguguacauu	chr16:88960383-88960684(-)$1	301	0	17	8.9907
CCUGCAUGUGGCAGGCU	chr2:86362986-86363215(+)$1	229	82	99	7.8464
UUGGUACAGAUCAGGCA	chr18:47811623-47811892(-)$1	269	16	33	7.1089
GUGCUAGCUGGCACCCC	chr19:54971466-54971695(+)$1	229	40	57	10.2507
GCUUCCCUAGGAAGAUC	chr1:28832474-28832697(+)$1	223	200	217	8.9610
GGGCUCUUAAGCCCCUC	chr19:49994071-49994290(+)$1	219	194	211	8.9907
CUCCGUGGUCGGGGGCC	chr15:93426437-93426697(+)$1	260	105	122	10.1668
GCGGUCUUGACUGGAGC	chr19:1417447-1417704(+)$1	257	65	82	7.4824
ACCCGAAGGCGGGUGGG	chr13:92000338-92000615(+)$1	277	167	184	11.0810
CAGCACUUCUGCUGAGA	chr19:10220351-10220606(+)$1	255	98	115	10.4169
GAAGAGCUGUCUUCCCC	chr17:37076016-37076317(+)$1	301	192	209	10.5101
GUUCUGUGCCGGGAGAG	chr7:1492362-1492636(-)$1	274	47	64	9.3398
GUGUUUCUGAAACAAAU	chr15:66793512-66793735(-)$1	223	108	125	9.3710
GUGACAGCAGUCACUGU	chrX:48677279-48677553(+)$1	274	5	22	8.9907
UGAAGAAACUUUCACAU	chr11:62620339-62620551(-)$1	212	50	67	8.9907
cgugguucaauccacgc	chr18:20954166-20954481(-)$1	315	173	190	8.2185
GGUCCUAAAGGACUUAG	chr12:6619499-6619713(+)$1	214	147	164	10.5101
GUCAGUUGCCUGGCUGU	chr19:49607533-49607782(+)$1	249	214	231	11.0810
AGGGCAGGGGGCCCUCU	chr4:878268-878543(-)$1	275	186	203	7.9318
GCCGCGCGCCGCGGGGA	chr7:5569351-5569625(-)$1	274	144	161	9.0360
GAGGGAAUAGUCAGAGG	chr19:2271429-2271665(+)$1	236	50	67	8.1335
UCUGUCUUUACAGAGGU	chr2:232320460-232320680(-)$1	220	127	144	7.4603
AUGCUGAGGGGCACUAG	chr14:21860268-21860514(-)$1	246	194	211	6.9875
ugugucugugcaugugu	chr19:7704938-7705242(+)$1	304	46	63	10.3909
GGUCCUAAAGGACUUAG	chr12:6619483-6619697(+)$1	214	163	180	10.5101
UCCGCGGGCGCGGGGGG	chr2:64880549-64880827(-)$1	278	105	122	11.1231
GGAUGUGGGCAUUCAGG	chr19:1411967-1412211(+)$1	244	141	158	10.0912
GUUUAUGAAUAAGCUUC	chr11:62622040-62622250(-)$1	210	164	181	10.8487
GCUUCUCCGGAGGCACC	chr3:169482515-169482779(-)$1	264	201	218	11.0810
AGUGAGUGUUUGCUGAG	chr16:12354775-12355030(+)$1	255	161	178	10.8759
CUUCUGGACAGAGGCCG	chr19:577275-577526(+)$1	251	56	73	6.0803
GUGGCACAUGCCGAGUC	chr1:173836735-173836980(-)$1	245	165	182	7.0806
ggcugcaacagcuguca	chr7:3038694-3038938(+)$1	244	50	67	8.1569
CCUUUGCUGAAAGGAGG	chr22:32020498-32020745(-)$1	247	50	67	10.7710
CUCCUGGAGAGGAGGGU	chr11:66391440-66391702(+)$1	262	109	126	8.8049
UGAGAAAGCUGUUUCAG	chr5:138614446-138614671(+)$1	225	0	17	7.6265
GGCCUCAAAAGGCCCGG	chr20:47895421-47895636(+)$1	215	141	158	8.5642
UGUGAUCUAUUCACAGU	chr12:98993315-98993569(+)$1	254	61	78	7.6773
AGUGAGUGUUUGCUGAG	chr16:12355819-12356127(+)$1	308	87	104	11.0810
GGACCGGGAGGUUAUAC	chr3:184043381-184043591(+)$1	210	84	101	7.7090
UCCAUUAGUACAUGGGC	chr20:17943419-17943675(-)$1	256	59	76	7.6265
CCAGGUCACCCUGGAAG	chr4:79697816-79698103(+)$1	287	27	44	10.8487
gagaucugggaucuggg	chr19:1165523-1165786(-)$1	263	163	180	8.9015

#DB
(((((....)))))..)	chr6:10777705-10778010(+)$1	1	280	297	8.4673
(((((....)))))..)	chr22:19887055-19887337(-)$1	1	191	208	10.8759
(((((....))).))))	chr16:88580954-88581294(+)$1	1	299	316	6.7508
.(((((...)))))..)	chr5:137896644-137896854(-)$1	1	38	55	8.9536
.((((....)))).)))	chr8:101316557-101316848(-)$1	1	40	57	6.7932
.(((((...))))).))	chr19:1165667-1165883(-)$1	1	98	115	8.9015
(((((....)))).)))	chr14:45579989-45580275(+)$1	1	2	19	7.1089
(((((......))))).	chr17:80107466-80107717(-)$1	1	199	216	8.2295
(((((....)))))...	chr9:139621136-139621359(-)$1	1	4	21	8.9907
.((((....)))).)))	chr2:97532373-97532608(-)$1	1	108	125	7.3697
(((((......))))))	chr17:18965297-18965549(+)$1	1	12	29	8.1844
(((((....)).)))))	chr17:48827967-48828254(+)$1	1	141	158	6.7309
(((((....)))))...	chr16:88960383-88960684(-)$1	1	0	17	8.9907
(((((.....)))))).	chr2:86362986-86363215(+)$1	1	82	99	7.8464
(((((....)))).)))	chr18:47811623-47811892(-)$1	1	16	33	7.1089
(((((....))))))))	chr19:54971466-54971695(+)$1	1	40	57	10.2507
.(((((...))))).))	chr1:28832474-28832697(+)$1	1	200	217	8.9610
(((((....)))))...	chr19:49994071-49994290(+)$1	1	194	211	8.9907
(((((....)))))((.	chr15:93426437-93426697(+)$1	1	105	122	10.1668
.((((....))))...)	chr19:1417447-1417704(+)$1	1	65	82	7.4824
(((((....))))).))	chr13:92000338-92000615(+)$1	1	167	184	11.0810
(((((....))))))).	chr19:10220351-10220606(+)$1	1	98	115	10.4169
(((((....))))))))	chr17:37076016-37076317(+)$1	1	192	209	10.5101
.(((((...))))).))	chr7:1492362-1492636(-)$1	1	47	64	9.3398
.(((((...)))))...	chr15:66793512-66793735(-)$1	1	108	125	9.3710
(((((....)))))...	chrX:48677279-48677553(+)$1	1	5	22	8.9907
(((((....)))))...	chr11:62620339-62620551(-)$1	1	50	67	8.9907
(((((......))))).	chr18:20954166-20954481(-)$1	1	173	190	8.2185
(((((....)))))(((	chr12:6619499-6619713(+)$1	1	147	164	10.5101
(((((....))))).))	chr19:49607533-49607782(+)$1	1	214	231	11.0810
(((((.....)))))..	chr4:878268-878543(-)$1	1	186	203	7.9318
.(((((...))))))))	chr7:5569351-5569625(-)$1	1	144	161	9.0360
)))))....))))).))	chr19:2271429-2271665(+)$1	1	50	67	8.1335
.((((....))))))))	chr2:232320460-232320680(-)$1	1	127	144	7.4603
.((((....)))).)).	chr14:21860268-21860514(-)$1	1	194	211	6.9875
(((((....))))).))	chr19:7704938-7705242(+)$1	1	46	63	10.3909
(((((....)))))(((	chr12:6619483-6619697(+)$1	1	163	180	10.5101
(((((....)))))...	chr2:64880549-64880827(-)$1	1	105	122	11.1231
(((((....))))).((	chr19:1411967-1412211(+)$1	1	141	158	10.0912
(((((....)))))..)	chr11:62622040-62622250(-)$1	1	164	181	10.8487
(((((....))))).))	chr3:169482515-169482779(-)$1	1	201	218	11.0810
(((((....)))))..)	chr16:12354775-12355030(+)$1	1	161	178	10.8759
(((((....))))))).	chr19:577275-577526(+)$1	1	56	73	6.0803
.((((....)))).)))	chr1:173836735-173836980(-)$1	1	165	182	7.0806
(((((...)))))((((	chr7:3038694-3038938(+)$1	1	50	67	8.1569
(((((....)))))..)	chr22:32020498-32020745(-)$1	1	50	67	10.7710
(((((....))))).))	chr11:66391440-66391702(+)$1	1	109	126	8.8049
(((((......))))).	chr5:138614446-138614671(+)$1	1	0	17	7.6265
(((((....))))))))	chr20:47895421-47895636(+)$1	1	141	158	8.5642
(((((.....)))))((	chr12:98993315-98993569(+)$1	1	61	78	7.6773
(((((....))))).))	chr16:12355819-12356127(+)$1	1	87	104	11.0810
(((((....))))...)	chr3:184043381-184043591(+)$1	1	84	101	7.7090
(((((......))))).	chr20:17943419-17943675(-)$1	1	59	76	7.6265
(((((....)))))..)	chr4:79697816-79698103(+)$1	1	27	44	10.8487
.(((((...))))).))	chr19:1165523-1165786(-)$1	1	163	180	8.9015

#PSSM
e : 0.70	[ : 0.12	! : 0.10	c : 0.03	g : 0.01	
e : 0.81	d : 0.16	g : 0.01	
e : 0.80	d : 0.16	c : 0.01	g : 0.01	
e : 0.78	d : 0.16	c : 0.01	b : 0.01	g : 0.01	
e : 0.78	d : 0.16	c : 0.01	b : 0.01	g : 0.01	
m : 0.69	e : 0.12	o : 0.09	n : 0.05	4 : 0.01	l : 0.01	
m : 0.69	l : 0.14	o : 0.09	n : 0.05	4 : 0.01	
m : 0.69	l : 0.14	o : 0.09	n : 0.05	4 : 0.01	
m : 0.69	l : 0.12	o : 0.09	n : 0.05	4 : 0.01	e : 0.01	
e : 0.63	d : 0.16	o : 0.09	n : 0.05	c : 0.01	b : 0.01	g : 0.01	
e : 0.69	d : 0.16	o : 0.09	c : 0.01	b : 0.01	g : 0.01	
e : 0.78	d : 0.16	c : 0.01	] : 0.01	g : 0.01	
e : 0.80	d : 0.16	] : 0.01	g : 0.01	
e : 0.81	] : 0.10	3 : 0.03	g : 0.01	d : 0.01	
e : 0.20	] : 0.18	: : 0.14	2 : 0.10	d : 0.09	c : 0.07	b : 0.07	3 : 0.07	f : 0.01	g : 0.01	D : 0.01	
c : 0.16	e : 0.14	d : 0.12	: : 0.10	2 : 0.10	b : 0.10	3 : 0.09	f : 0.05	a : 0.01	h : 0.01	g : 0.01	E : 0.01	D : 0.01	
c : 0.20	d : 0.16	: : 0.12	e : 0.10	] : 0.09	f : 0.07	3 : 0.05	b : 0.03	a : 0.03	I : 0.01	[ : 0.01	4 : 0.01	h : 0.01	E : 0.01	D : 0.01	

#score	491.0650732890873
#seq	55
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_CDS_m1_run1.txt

#BEAR
!!bb[ccc[bbnnnnnbbcccbb22	chr20:62338329-62338606(-)$1	277	85	110	13.7757
dd[dddd"""annnnna333dddd]	chr16:89976840-89977113(+)$1	273	40	65	14.4884
ffffff!!cccnnnnnccc4444ff	chr5:179047917-179048173(-)$1	256	52	77	12.6940
$$$dddd[cccnnnnncccdddd44	chr5:179048271-179048511(-)$1	240	144	169	14.8816
#ffffff[cccnnnnnccc22ffff	chr8:145742468-145742753(-)$1	285	215	240	12.8284
[a[eeeee[bbnnnnnbbeeeee]a	chr16:89836543-89836834(-)$1	291	262	287	14.2934
:==========nnnnn=========	chr2:85770652-85770913(+)$1	261	96	121	12.8833
b!!dddd[cccnnnnnccc]dddd2	chr9:123202121-123202413(-)$1	292	209	234	15.0010
ddd!!ccccccnnnnnccc]ccc55	chr16:546658-546950(+)$1	292	37	62	12.3590
::eeeee!!bbnnnnnbb]eeeee:	chr20:42087683-42087927(+)$1	244	211	236	12.5575
!dddd[bb[bbnnnnnbb]bbdddd	chr20:39796336-39796594(+)$1	258	89	114	13.5711
::dddd!!cccnnnnnccc22dddd	chr1:19431020-19431308(-)$1	288	25	50	13.0677
:ggggggg[bbnnnnnbb]gggggg	chr5:179043852-179044097(-)$1	245	147	172	13.5393
####dddd[bbnnnnnbb]dddd44	chr3:15091300-15091604(-)$1	304	131	156	15.7217

#otherMatches

#Seq PSSM
gaccaccguggagaagcccggggga	chr20:62338329-62338606(-)$1	277	85	110	13.7757
CUGGCGGCCCCUCCGUGUCCCUGCG	chr16:89976840-89977113(+)$1	273	40	65	14.4884
CUUCCUAGCUUAUCUAAAGACCCAG	chr5:179047917-179048173(-)$1	256	52	77	12.6940
UCGUUUCAUCUACACCAGAGAAGGC	chr5:179048271-179048511(-)$1	240	144	169	14.8816
CGGGCUGCGACCAAGAGUCCACAGU	chr8:145742468-145742753(-)$1	285	215	240	12.8284
UGAGGCUCUCCUUCAUGGGGGCCAC	chr16:89836543-89836834(-)$1	291	262	287	14.2934
UUAAUUUAAUGCUACAUAUUAAGUU	chr2:85770652-85770913(+)$1	261	96	121	12.8833
CAAAGAAAAUCCUGAAGAUGUUCUG	chr9:123202121-123202413(-)$1	292	209	234	15.0010
GCCCUGCAUGCCGGGAGCAUUGCUG	chr16:546658-546950(+)$1	292	37	62	12.3590
UUUGGCUGACCUUACCGGAAGCCAU	chr20:42087683-42087927(+)$1	244	211	236	12.5575
ACCAGUAGCUGCUUUCUACCUCUGG	chr20:39796336-39796594(+)$1	258	89	114	13.5711
AGGGUUCGAUUAAGAAGAUGUAACU	chr1:19431020-19431308(-)$1	288	25	50	13.0677
AUGUAGAACUCUUCUUGAAUUCUAC	chr5:179043852-179044097(-)$1	245	147	172	13.5393
UUCUGAAGUGACCACUUUUCUUCUC	chr3:15091300-15091604(-)$1	304	131	156	15.7217

#DB
..((.(((.((.....)))))))..	chr20:62338329-62338606(-)$1	1	85	110	13.7757
((.((((...(.....)...)))).	chr16:89976840-89977113(+)$1	1	40	65	14.4884
((((((..(((.....)))....))	chr5:179047917-179048173(-)$1	1	52	77	12.6940
...((((.(((.....)))))))..	chr5:179048271-179048511(-)$1	1	144	169	14.8816
.((((((.(((.....)))..))))	chr8:145742468-145742753(-)$1	1	215	240	12.8284
.(.(((((.((.....))))))).)	chr16:89836543-89836834(-)$1	1	262	287	14.2934
.((((((((((.....)))))))))	chr2:85770652-85770913(+)$1	1	96	121	12.8833
(..((((.(((.....))).)))).	chr9:123202121-123202413(-)$1	1	209	234	15.0010
(((..((((((.....))).)))..	chr16:546658-546950(+)$1	1	37	62	12.3590
..(((((..((.....)).))))).	chr20:42087683-42087927(+)$1	1	211	236	12.5575
.((((.((.((.....)).))))))	chr20:39796336-39796594(+)$1	1	89	114	13.5711
..((((..(((.....)))..))))	chr1:19431020-19431308(-)$1	1	25	50	13.0677
.(((((((.((.....)).))))))	chr5:179043852-179044097(-)$1	1	147	172	13.5393
....((((.((.....)).))))..	chr3:15091300-15091604(-)$1	1	131	156	15.7217

#PSSM
: : 0.28	! : 0.14	d : 0.14	# : 0.14	f : 0.07	$ : 0.07	[ : 0.07	b : 0.07	
d : 0.21	! : 0.14	f : 0.14	: : 0.14	$ : 0.07	a : 0.07	= : 0.07	g : 0.07	# : 0.07	
d : 0.21	[ : 0.14	f : 0.14	b : 0.07	$ : 0.07	= : 0.07	! : 0.07	e : 0.07	g : 0.07	# : 0.07	
d : 0.35	f : 0.14	e : 0.14	b : 0.07	= : 0.07	! : 0.07	g : 0.07	# : 0.07	
d : 0.42	f : 0.14	e : 0.14	[ : 0.07	= : 0.07	! : 0.07	g : 0.07	
d : 0.35	c : 0.14	f : 0.14	e : 0.14	= : 0.07	[ : 0.07	g : 0.07	
d : 0.28	c : 0.14	! : 0.14	e : 0.14	f : 0.07	= : 0.07	b : 0.07	g : 0.07	
! : 0.21	[ : 0.21	c : 0.14	" : 0.07	e : 0.07	= : 0.07	b : 0.07	g : 0.07	d : 0.07	
c : 0.42	[ : 0.35	" : 0.07	= : 0.07	! : 0.07	
b : 0.42	c : 0.42	" : 0.07	= : 0.07	
b : 0.42	c : 0.42	a : 0.07	= : 0.07	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
b : 0.42	c : 0.42	a : 0.07	= : 0.07	
b : 0.42	c : 0.42	3 : 0.07	= : 0.07	
c : 0.49	] : 0.28	3 : 0.07	e : 0.07	= : 0.07	
d : 0.14	2 : 0.14	e : 0.14	] : 0.14	c : 0.07	3 : 0.07	4 : 0.07	= : 0.07	b : 0.07	g : 0.07	
d : 0.28	c : 0.14	2 : 0.14	e : 0.14	4 : 0.07	= : 0.07	b : 0.07	g : 0.07	
d : 0.42	e : 0.14	b : 0.07	4 : 0.07	f : 0.07	= : 0.07	c : 0.07	g : 0.07	
d : 0.42	e : 0.14	b : 0.07	4 : 0.07	f : 0.07	= : 0.07	c : 0.07	g : 0.07	
d : 0.28	f : 0.14	4 : 0.14	2 : 0.07	] : 0.07	= : 0.07	5 : 0.07	e : 0.07	g : 0.07	
2 : 0.14	f : 0.14	4 : 0.14	d : 0.14	] : 0.07	a : 0.07	= : 0.07	5 : 0.07	: : 0.07	g : 0.07	

#score	191.6628870661429
#seq	14
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_transcript_m3_run2.txt

#BEAR
dddd!!attttttttttta22dddd	chr19:5957384-5957648(-)$1	264	21	46	21.5490
!ccc[cccssssssssssccc]ccc	chr4:1216316-1216594(-)$1	278	95	120	16.9240
d"""ddddssssssssssdddd444	chr10:80830155-80830407(+)$1	252	140	165	16.4907
ggg!!cccssssssssssccc333g	chr12:53892939-53893273(-)$1	334	117	142	17.5389
!a[ddddvvvvvvvvvvvvvdddd]	chr17:70118530-70118766(+)$1	236	65	90	20.4049
cccyyyyyyyyyyyyyyyyccc22h	chr1:17929721-17929975(+)$1	254	96	121	18.2973
iiiiiiiuuuuuuuuuuuuiiiiii	chr11:61197165-61197469(-)$1	304	241	266	21.9719
"ccc[bbssssssssssbb]ccc33	chr2:10331515-10331770(+)$1	255	17	42	16.1519
ddddd[bbssssssssssbb]dddd	chr17:76850689-76850932(-)$1	243	186	211	15.4923
iiiiiiiissssssssssiiiiiii	chr16:88520227-88520485(+)$1	258	30	55	16.4199
)fffffftttttttttttffffff6	chr10:75878326-75878601(+)$1	275	225	250	20.0504
eeeeeeettttttttttteeeee]e	chr1:230838512-230838740(-)$1	228	9	34	21.9746
eeeee[attttttttttta]eeeee	chr1:1280435-1280700(-)$1	265	68	93	22.4447
b[eeeeettttttttttteeeee]b	chr17:79121973-79122249(-)$1	276	202	227	21.5841
dd!!ddddssssssssssdddd22d	chr1:3480961-3481196(-)$1	235	133	158	16.2294
cc[dddduuuuuuuuuuuudddd]c	chr5:176516616-176516889(+)$1	273	242	267	21.7106
fffffwwwwwwwwwwwwwwffffff	chr14:105257693-105257930(-)$1	237	127	152	18.6864
eeeeccctttttttttttccc22ee	chr17:80189794-80190083(+)$1	289	228	253	22.1516
ffffffvvvvvvvvvvvvvffffff	chr15:73977373-73977700(+)$1	327	134	159	19.2179
[a"""bbvvvvvvvvvvvvvbb444	chr2:191513639-191513852(+)$1	213	119	144	19.7490
ccc!!cccssssssssssccc22cc	chr3:126712106-126712347(+)$1	241	7	32	16.8093
ee[ddddtttttttttttdddd]ee	chr3:78646510-78646768(-)$1	258	186	211	22.1207
gg[ddddvvvvvvvvvvvvvddddg	chr19:5206387-5206626(-)$1	239	87	112	20.3114
iiiiiiitttttttttttiiiiiii	chr16:88583218-88583506(+)$1	288	197	222	22.2038
eee[ccctttttttttttccceeee	chr19:42752220-42752471(-)$1	251	188	213	22.3552
iiiiiiiyyyyyyyyyyyyyyyyii	chr17:56081954-56082178(-)$1	224	29	54	18.7299
!!bb[bbtttttttttttbb]bb22	chr1:116916095-116916388(+)$1	293	234	259	20.4175
gggggggtttttttttttggggggg	chr20:60638115-60638380(-)$1	265	118	143	21.9935
=======wwwwwwwwwwwwww====	chr16:88563832-88564099(+)$1	267	191	216	20.3645
eeeee!!assssssssssa22eeee	chr8:142425011-142425281(+)$1	270	161	186	17.0159
gggg[bbtttttttttttbb]gggg	chr14:100772335-100772613(-)$1	278	58	83	21.6711
!dddd[attttttttttta]dddd2	chr8:145738066-145738297(+)$1	231	122	147	21.9751
:bbddddtttttttttttdddd]bb	chr2:240310278-240310538(-)$1	260	61	86	19.8835
a!!ddddtttttttttttdddd]a]	chr22:21801887-21802149(+)$1	262	116	141	22.3191
cc!!cccvvvvvvvvvvvvvccc22	chr3:78647708-78647990(-)$1	282	122	147	20.4144
=======uuuuuuuuuuuu======	chr17:230787-231035(-)$1	248	129	154	22.4478
ddddccctttttttttttccc]ddd	chr5:1056667-1056933(-)$1	266	198	223	21.7058
eeeeeyyyyyyyyyyyyyyyyeeee	chr1:236140105-236140334(-)$1	229	190	215	19.0063
e[a!!bbtttttttttttbb22a]e	chr16:2280504-2280800(+)$1	296	114	139	21.4775
::eeeeevvvvvvvvvvvvveeeee	chr19:56153300-56153543(+)$1	243	217	242	18.4517
dddd[cccssssssssssccc]ddd	chr6:24719983-24720189(-)$1	206	46	71	16.4419
"""ddddtttttttttttdddd]dd	chr10:102758983-102759273(+)$1	290	202	227	22.0008
gggggggssssssssssgggggggc	chr19:6212233-6212480(-)$1	247	75	100	15.9592
eeeee!!assssssssssa22eeee	chr8:142425156-142425436(+)$1	280	16	41	17.0159
:ffffffuuuuuuuuuuuuffffff	chr9:136627648-136627897(-)$1	249	64	89	19.8330
e!!cccuuuuuuuuuuuuccc22ee	chr7:5462655-5462897(-)$1	242	156	181	21.3464
ffffffvvvvvvvvvvvvvffffff	chr17:27619845-27620131(-)$1	286	41	66	19.2179
!!eeeeesssssssssseeeee]a3	chr16:70406051-70406343(+)$1	292	180	205	16.6086
ccc!!bbvvvvvvvvvvvvvbb22c	chr16:30958905-30959158(+)$1	253	180	205	19.6334
dffffffuuuuuuuuuuuuffffff	chr6:53132858-53133118(-)$1	260	14	39	20.6575
e[eeeeevvvvvvvvvvvvveeeee	chr9:137227724-137227943(+)$1	219	149	174	20.5076
"""ddddtttttttttttdddd333	chr5:1066994-1067273(-)$1	279	4	29	22.4974
f[eeeeettttttttttteeeeeff	chr17:17586118-17586391(+)$1	273	9	34	21.7946
a[eeeeesssssssssseeeee]a]	chr11:63912832-63913078(-)$1	246	165	190	16.4391

#otherMatches

#Seq PSSM
CCUUAGGAAAACCAACAGCAGAGGG	chr19:5957384-5957648(-)$1	264	21	46	21.5490
GCUGAGUGGGGGUUGGAACACCCAG	chr4:1216316-1216594(-)$1	278	95	120	16.9240
GGCCCCCCACCCCUCCCCGGGGACA	chr10:80830155-80830407(+)$1	252	140	165	16.4907
UGGGAUCCGGGCGUGGAGGGAGGGU	chr12:53892939-53893273(-)$1	334	117	142	17.5389
GCGUUUCCAAAAUAGAAAUAGAAGG	chr17:70118530-70118766(+)$1	236	65	90	20.4049
GGCGGGGAGAAGCGAGGGAGCCGGC	chr1:17929721-17929975(+)$1	254	96	121	18.2973
GUUUGUCGGGAGGGAGCGGGGCGGG	chr11:61197165-61197469(-)$1	304	241	266	21.9719
CAGUGUCAGUGAGGGUAGGGACUUA	chr2:10331515-10331770(+)$1	255	17	42	16.1519
UUAGUGUUCCCUCCCUCAAAGACUG	chr17:76850689-76850932(-)$1	243	186	211	15.4923
CCUGGGCCCCCGCGUCUCGGCUUGG	chr16:88520227-88520485(+)$1	258	30	55	16.4199
CUAGUUUCCCACAAUAUAAAACUGU	chr10:75878326-75878601(+)$1	275	225	250	20.0504
GCCGUUUCUCCUUGGUCUAAGUGUG	chr1:230838512-230838740(-)$1	228	9	34	21.9746
AGAGGGCGGAGUGAGUAGGGCCUCU	chr1:1280435-1280700(-)$1	265	68	93	22.4447
GAGUGAUAAUCAAAUACAAUCAUAC	chr17:79121973-79122249(-)$1	276	202	227	21.5841
UAGAUGUGAGGGAAGGAACACGAGu	chr1:3480961-3481196(-)$1	235	133	158	16.2294
CAAGCAUUCAUCUAUCACUGUGUCU	chr5:176516616-176516889(+)$1	273	242	267	21.7106
GCCUCGAGAUGAAGACAAGGAGGCU	chr14:105257693-105257930(-)$1	237	127	152	18.6864
AGGAAGGAAACGAAUUACCCUUUUC	chr17:80189794-80190083(+)$1	289	228	253	22.1516
GCCUCAGGGAGGUGGGGGGUGAGGU	chr15:73977373-73977700(+)$1	327	134	159	19.2179
ggaaggcaggggaggggagggcaag	chr2:191513639-191513852(+)$1	213	119	144	19.7490
GGGUUGAGAUUCUACCAACUCUUCC	chr3:126712106-126712347(+)$1	241	7	32	16.8093
UUGUUCAUUUAGAUAAUUUGAAAAA	chr3:78646510-78646768(-)$1	258	186	211	22.1207
CAAUUCCAAAACCAGAUUCCGGGGU	chr19:5206387-5206626(-)$1	239	87	112	20.3114
acuugccgugugaccuggggcaggu	chr16:88583218-88583506(+)$1	288	197	222	22.2038
UUUUCUAUUACAAUCGCUUAGGAAG	chr19:42752220-42752471(-)$1	251	188	213	22.3552
AAUUGCUUUGCUUUUUAAACCUUGG	chr17:56081954-56082178(-)$1	224	29	54	18.7299
GGGGGGCGGGGGAAGGGAGCGCCGA	chr1:116916095-116916388(+)$1	293	234	259	20.4175
GGGCAGGGGUGGGGAAAGCCUGUCU	chr20:60638115-60638380(-)$1	265	118	143	21.9935
GUACCCUGAAGGGUUUUGUGGGGGG	chr16:88563832-88564099(+)$1	267	191	216	20.3645
UCCUGGAGGAAAUGGGGACAACAGG	chr8:142425011-142425281(+)$1	270	161	186	17.0159
CUUGGCUGGAUGCGCGGGGGGUAAG	chr14:100772335-100772613(-)$1	278	58	83	21.6711
CAGCCCCUCCACACCCCUGUGGCUU	chr8:145738066-145738297(+)$1	231	122	147	21.9751
ACUGGCUGGAUGCAGAGAAGCCUGG	chr2:240310278-240310538(-)$1	260	61	86	19.8835
GGGUGGGGGGAGGCUAGACUCAAUG	chr22:21801887-21802149(+)$1	262	116	141	22.3191
CAAAGAGCCUUCCUAUUCCCCUCGC	chr3:78647708-78647990(-)$1	282	122	147	20.4144
CCGGGAGGGAUGAGGACGGCUUCCG	chr17:230787-231035(-)$1	248	129	154	22.4478
CUCUUGUUUUUUUCUCCUGCAUAGA	chr5:1056667-1056933(-)$1	266	198	223	21.7058
AACCAUGACCUCACCCCUCCUUGGU	chr1:236140105-236140334(-)$1	229	190	215	19.0063
UGCAGCAGGAAGAGGGGGUGGAGGA	chr16:2280504-2280800(+)$1	296	114	139	21.4775
AACAGAUUUAGGGAUUGAUUGUCUG	chr19:56153300-56153543(+)$1	243	217	242	18.4517
GUUUCCACGAUGAAAUGAGUGAAAA	chr6:24719983-24720189(-)$1	206	46	71	16.4419
UGAGAGCGUGUCAGGGAAGCUUCGC	chr10:102758983-102759273(+)$1	290	202	227	22.0008
UUGUAGGUUAAGAUGUCUCUGCGGU	chr19:6212233-6212480(-)$1	247	75	100	15.9592
UCCUGGAGGAAAUGGGGACAACAGG	chr8:142425156-142425436(+)$1	280	16	41	17.0159
UGCCUCUGGGGUGUAGGGAAGAGGC	chr9:136627648-136627897(-)$1	249	64	89	19.8330
GUUUUUAAUUAAAAGCCGGAAUUCA	chr7:5462655-5462897(-)$1	242	156	181	21.3464
GCUUCCUGUCCGCCAUGUUGGAAGC	chr17:27619845-27620131(-)$1	286	41	66	19.2179
AAACGAUAGAUGUGCAGGUUGUGCG	chr16:70406051-70406343(+)$1	292	180	205	16.6086
CUGAGCUGGAGGUGGGGAUGAGAGC	chr16:30958905-30959158(+)$1	253	180	205	19.6334
CAGCAAACAAAAAGUCAAUUUUGCU	chr6:53132858-53133118(-)$1	260	14	39	20.6575
GCGGUGGAGCUGCCCCUACCCCACC	chr9:137227724-137227943(+)$1	219	149	174	20.5076
GGGCAGAAGGUGGAGGUGUCUGGAG	chr5:1066994-1067273(-)$1	279	4	29	22.4974
UGCCGCGGUGCUCUCCUGCGCGGAg	chr17:17586118-17586391(+)$1	273	9	34	21.7946
uccccaggaaaugauuacuGGGAAG	chr11:63912832-63913078(-)$1	246	165	190	16.4391

#DB
((((..(...........)..))))	chr19:5957384-5957648(-)$1	1	21	46	21.5490
.(((.(((..........))).)))	chr4:1216316-1216594(-)$1	1	95	120	16.9240
(...((((..........))))...	chr10:80830155-80830407(+)$1	1	140	165	16.4907
(((..(((..........)))...)	chr12:53892939-53893273(-)$1	1	117	142	17.5389
.(.((((.............)))).	chr17:70118530-70118766(+)$1	1	65	90	20.4049
(((................)))..)	chr1:17929721-17929975(+)$1	1	96	121	18.2973
(((((((............))))))	chr11:61197165-61197469(-)$1	1	241	266	21.9719
.(((.((..........)).)))..	chr2:10331515-10331770(+)$1	1	17	42	16.1519
(((((.((..........)).))))	chr17:76850689-76850932(-)$1	1	186	211	15.4923
((((((((..........)))))))	chr16:88520227-88520485(+)$1	1	30	55	16.4199
.((((((...........)))))).	chr10:75878326-75878601(+)$1	1	225	250	20.0504
(((((((...........))))).)	chr1:230838512-230838740(-)$1	1	9	34	21.9746
(((((.(...........).)))))	chr1:1280435-1280700(-)$1	1	68	93	22.4447
(.(((((...........))))).)	chr17:79121973-79122249(-)$1	1	202	227	21.5841
((..((((..........))))..)	chr1:3480961-3481196(-)$1	1	133	158	16.2294
((.((((............)))).)	chr5:176516616-176516889(+)$1	1	242	267	21.7106
(((((..............))))))	chr14:105257693-105257930(-)$1	1	127	152	18.6864
(((((((...........)))..))	chr17:80189794-80190083(+)$1	1	228	253	22.1516
((((((.............))))))	chr15:73977373-73977700(+)$1	1	134	159	19.2179
.(...((.............))...	chr2:191513639-191513852(+)$1	1	119	144	19.7490
(((..(((..........)))..))	chr3:126712106-126712347(+)$1	1	7	32	16.8093
((.((((...........)))).))	chr3:78646510-78646768(-)$1	1	186	211	22.1207
((.((((.............)))))	chr19:5206387-5206626(-)$1	1	87	112	20.3114
(((((((...........)))))))	chr16:88583218-88583506(+)$1	1	197	222	22.2038
(((.(((...........)))))))	chr19:42752220-42752471(-)$1	1	188	213	22.3552
(((((((................))	chr17:56081954-56082178(-)$1	1	29	54	18.7299
..((.((...........)).))..	chr1:116916095-116916388(+)$1	1	234	259	20.4175
(((((((...........)))))))	chr20:60638115-60638380(-)$1	1	118	143	21.9935
(((((((..............))))	chr16:88563832-88564099(+)$1	1	191	216	20.3645
(((((..(..........)..))))	chr8:142425011-142425281(+)$1	1	161	186	17.0159
((((.((...........)).))))	chr14:100772335-100772613(-)$1	1	58	83	21.6711
.((((.(...........).)))).	chr8:145738066-145738297(+)$1	1	122	147	21.9751
.((((((...........)))).))	chr2:240310278-240310538(-)$1	1	61	86	19.8835
(..((((...........)))).).	chr22:21801887-21802149(+)$1	1	116	141	22.3191
((..(((.............)))..	chr3:78647708-78647990(-)$1	1	122	147	20.4144
(((((((............))))))	chr17:230787-231035(-)$1	1	129	154	22.4478
(((((((...........))).)))	chr5:1056667-1056933(-)$1	1	198	223	21.7058
(((((................))))	chr1:236140105-236140334(-)$1	1	190	215	19.0063
(.(..((...........))..).)	chr16:2280504-2280800(+)$1	1	114	139	21.4775
..(((((.............)))))	chr19:56153300-56153543(+)$1	1	217	242	18.4517
((((.(((..........))).)))	chr6:24719983-24720189(-)$1	1	46	71	16.4419
...((((...........)))).))	chr10:102758983-102759273(+)$1	1	202	227	22.0008
(((((((..........)))))))(	chr19:6212233-6212480(-)$1	1	75	100	15.9592
(((((..(..........)..))))	chr8:142425156-142425436(+)$1	1	16	41	17.0159
.((((((............))))))	chr9:136627648-136627897(-)$1	1	64	89	19.8330
(..(((............)))..))	chr7:5462655-5462897(-)$1	1	156	181	21.3464
((((((.............))))))	chr17:27619845-27620131(-)$1	1	41	66	19.2179
..(((((..........))))).).	chr16:70406051-70406343(+)$1	1	180	205	16.6086
(((..((.............))..)	chr16:30958905-30959158(+)$1	1	180	205	19.6334
)((((((............))))))	chr6:53132858-53133118(-)$1	1	14	39	20.6575
(.(((((.............)))))	chr9:137227724-137227943(+)$1	1	149	174	20.5076
...((((...........))))...	chr5:1066994-1067273(-)$1	1	4	29	22.4974
(.(((((...........)))))))	chr17:17586118-17586391(+)$1	1	9	34	21.7946
(.(((((..........))))).).	chr11:63912832-63913078(-)$1	1	165	190	16.4391

#PSSM
e : 0.20	d : 0.12	! : 0.09	g : 0.09	c : 0.09	i : 0.07	f : 0.07	" : 0.05	: : 0.05	= : 0.03	a : 0.03	) : 0.01	b : 0.01	[ : 0.01	
e : 0.14	c : 0.12	d : 0.11	f : 0.11	g : 0.09	[ : 0.09	i : 0.07	! : 0.07	" : 0.05	a : 0.03	= : 0.03	b : 0.01	: : 0.01	
e : 0.24	f : 0.11	d : 0.09	c : 0.09	" : 0.07	g : 0.07	[ : 0.07	i : 0.07	! : 0.07	b : 0.03	= : 0.03	a : 0.01	
d : 0.24	e : 0.22	! : 0.11	f : 0.11	i : 0.07	c : 0.05	g : 0.05	" : 0.03	= : 0.03	y : 0.01	[ : 0.01	b : 0.01	
d : 0.22	e : 0.20	f : 0.11	! : 0.09	[ : 0.09	c : 0.09	i : 0.07	g : 0.03	= : 0.03	y : 0.01	" : 0.01	
d : 0.18	c : 0.16	e : 0.12	b : 0.11	f : 0.09	i : 0.07	! : 0.05	[ : 0.05	y : 0.03	g : 0.03	= : 0.03	w : 0.01	
d : 0.18	c : 0.14	b : 0.12	e : 0.12	i : 0.07	a : 0.05	f : 0.05	y : 0.03	v : 0.03	g : 0.03	= : 0.03	! : 0.03	w : 0.01	u : 0.01	
t : 0.37	v : 0.16	u : 0.11	c : 0.07	s : 0.07	y : 0.05	d : 0.03	w : 0.03	a : 0.03	b : 0.01	i : 0.01	
t : 0.37	s : 0.25	v : 0.16	u : 0.11	y : 0.05	w : 0.03	
t : 0.37	s : 0.25	v : 0.16	u : 0.11	y : 0.05	w : 0.03	
t : 0.37	s : 0.25	v : 0.16	u : 0.11	y : 0.05	w : 0.03	
t : 0.37	s : 0.25	v : 0.16	u : 0.11	y : 0.05	w : 0.03	
t : 0.37	s : 0.25	v : 0.16	u : 0.11	y : 0.05	w : 0.03	
t : 0.37	s : 0.25	v : 0.16	u : 0.11	y : 0.05	w : 0.03	
t : 0.37	s : 0.25	v : 0.16	u : 0.11	y : 0.05	w : 0.03	
t : 0.37	s : 0.25	v : 0.16	u : 0.11	y : 0.05	w : 0.03	
t : 0.37	s : 0.25	v : 0.16	u : 0.11	y : 0.05	w : 0.03	
t : 0.37	s : 0.18	v : 0.16	u : 0.11	y : 0.05	w : 0.03	e : 0.03	b : 0.01	g : 0.01	
v : 0.16	c : 0.14	d : 0.12	a : 0.09	u : 0.09	b : 0.09	e : 0.09	y : 0.05	i : 0.03	w : 0.03	g : 0.03	f : 0.01	
c : 0.16	d : 0.14	v : 0.12	f : 0.11	e : 0.09	b : 0.07	2 : 0.05	i : 0.05	] : 0.05	y : 0.03	g : 0.03	w : 0.01	= : 0.01	
c : 0.20	d : 0.20	e : 0.14	f : 0.11	2 : 0.07	i : 0.05	] : 0.05	b : 0.03	y : 0.03	g : 0.03	w : 0.01	= : 0.01	
d : 0.24	e : 0.22	f : 0.11	2 : 0.07	] : 0.05	c : 0.05	i : 0.05	b : 0.05	g : 0.05	= : 0.03	3 : 0.01	y : 0.01	
e : 0.18	d : 0.14	2 : 0.11	f : 0.11	] : 0.11	c : 0.05	i : 0.05	g : 0.05	4 : 0.03	3 : 0.03	= : 0.03	y : 0.01	b : 0.01	a : 0.01	
e : 0.18	d : 0.14	f : 0.12	2 : 0.09	i : 0.07	] : 0.07	3 : 0.05	g : 0.05	a : 0.05	c : 0.03	4 : 0.03	= : 0.03	b : 0.01	
e : 0.22	d : 0.11	f : 0.11	c : 0.09	g : 0.07	i : 0.07	] : 0.05	3 : 0.05	2 : 0.05	4 : 0.03	b : 0.03	= : 0.03	h : 0.01	6 : 0.01	

#score	1066.6697675947796
#seq	54
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_transcript_m1_run2.txt

#BEAR
eeewwwwwwwwwwwwwweeee	chr2:143777292-143777543(+)$1	251	133	154	20.8932
ddddtttttttttttddddff	chr10:77392825-77393073(+)$1	248	74	95	20.9425
=====ttttttttttt=====	chr2:58399594-58399863(-)$1	269	161	182	21.2879
ffffftttttttttttfffff	chr8:100293660-100293916(+)$1	256	31	52	20.3647
!cccwwwwwwwwwwwwwwccc	chr3:107384389-107384707(+)$1	318	45	66	21.7415
ddddtttttttttttdddd44	chr3:71210189-71210442(-)$1	253	209	230	20.9769
ffffyyyyyyyyyyyyyyyyf	chr3:139082999-139083276(-)$1	277	172	193	20.2715
yyyyyyyyyyyyyyyyddddc	chr10:77731042-77731292(+)$1	250	180	201	19.2611
ffffwwwwwwwwwwwwwwfff	chr10:34534958-34535228(-)$1	270	216	237	20.9544
""bbwwwwwwwwwwwwwwbb]	chr16:52546589-52546828(-)$1	239	8	29	20.3928
eeeeettttttttttteeeee	chr1:165812228-165812487(+)$1	259	92	113	20.7186
hhhhvvvvvvvvvvvvvhhhh	chr2:188401802-188402068(-)$1	266	229	250	20.7726
dd[attttttttttta]dddd	chr15:56500173-56500389(-)$1	216	122	143	21.5568
ddddwwwwwwwwwwwwwwddd	chr12:72045908-72046182(-)$1	274	51	72	21.5155
gggguuuuuuuuuuuuggggg	chr3:194163404-194163657(-)$1	253	91	112	22.5132
ddddwwwwwwwwwwwwwwddd	chr20:40061439-40061700(-)$1	261	19	40	21.5155
ddddwwwwwwwwwwwwwwddd	chr3:41249164-41249495(+)$1	331	37	58	21.5155
[cccuuuuuuuuuuuuccc]f	chr16:11798144-11798409(-)$1	265	152	173	23.1471
ddddwwwwwwwwwwwwwwddd	chr10:34598165-34598421(-)$1	256	145	166	21.5155
dddduuuuuuuuuuuudddd3	chr8:123928402-123928684(+)$1	282	244	265	22.7317
[cccuuuuuuuuuuuuccc]d	chr11:86829431-86829648(+)$1	217	115	136	23.0969
fffftttttttttttffffff	chr11:86881428-86881718(+)$1	290	129	150	20.2345
[bbbbtttttttttttbb]bb	chr1:55553237-55553553(-)$1	316	164	185	19.6214
yyyyyyyyyyyyyyyydddd]	chr6:36071815-36072077(+)$1	262	35	56	19.3005
dddduuuuuuuuuuuudddd2	chr14:55781659-55781907(+)$1	248	102	123	22.5114
ddddtttttttttttdddd]c	chr4:3197533-3197785(+)$1	252	132	153	21.0310
[cccuuuuuuuuuuuucccdd	chr1:143449173-143449407(-)$1	234	29	50	23.1068
dddduuuuuuuuuuuudddd4	chr3:136620141-136620467(+)$1	326	14	35	22.6757
ffffftttttttttttfffff	chr6:138761761-138762019(-)$1	258	233	254	20.3647
eeeeuuuuuuuuuuuueeeee	chr2:120909915-120910210(+)$1	295	125	146	22.2624
eeeeettttttttttteeeee	chr1:8521522-8521781(-)$1	259	189	210	20.7186
ddddwwwwwwwwwwwwwwddd	chr12:1836560-1836867(+)$1	307	141	162	21.5155
dddduuuuuuuuuuuudddd]	chr2:58443133-58443381(-)$1	248	23	44	22.7236
:cccwwwwwwwwwwwwwwccc	chr5:77036993-77037261(-)$1	268	196	217	20.6364
!!ccctttttttttttccc22	chr7:73111192-73111445(+)$1	253	57	78	21.3483
fffauuuuuuuuuuuua]fff	chr14:68495017-68495286(+)$1	269	90	111	22.4831
gggggtttttttttttggggg	chr20:47902423-47902685(+)$1	262	213	234	20.8704
====uuuuuuuuuuuu=====	chr10:17752733-17752987(+)$1	254	185	206	22.8671
eeeawwwwwwwwwwwwwwa]e	chr6:147991550-147991778(+)$1	228	14	35	21.3493
ddddwwwwwwwwwwwwwwddd	chr19:30454120-30454368(+)$1	248	176	197	21.5155
yyyyyyyyyyyyyyyybbggg	chr11:58363928-58364187(+)$1	259	152	173	18.9997
[cccvvvvvvvvvvvvvcccf	chr1:1995884-1996185(+)$1	301	265	286	22.7429
[cccvvvvvvvvvvvvvccc]	chr6:145008872-145009113(+)$1	241	69	90	22.7855
ffffyyyyyyyyyyyyyyyyf	chr22:28845520-28845759(-)$1	239	90	111	20.2715
iiiivvvvvvvvvvvvviiii	chr16:69176270-69176518(+)$1	248	135	156	22.3594
ffffyyyyyyyyyyyyyyyyf	chr3:100126307-100126568(+)$1	261	152	173	20.2715
!!bbyyyyyyyyyyyyyyyyb	chr2:46950054-46950293(+)$1	239	188	209	19.9962
ddddvvvvvvvvvvvvvdddd	chr2:240908406-240908645(-)$1	239	125	146	22.3821
:cccwwwwwwwwwwwwwwccc	chr16:75081521-75081780(+)$1	259	76	97	20.6364
$$ccctttttttttttccc33	chr20:45841554-45841798(-)$1	244	27	48	21.1057
iiiiwwwwwwwwwwwwwwiii	chr4:124600510-124600754(+)$1	244	124	145	21.5018
ddbbuuuuuuuuuuuubb]dd	chr10:70524268-70524577(+)$1	309	130	151	21.8329
iiiivvvvvvvvvvvvviiii	chr9:96072125-96072418(+)$1	293	209	230	22.3594
[cccuuuuuuuuuuuuccc]b	chr10:88544447-88544688(+)$1	241	51	72	22.8797
[cccuuuuuuuuuuuuccc22	chr10:103431895-103432187(-)$1	292	36	57	22.7810
hhhhvvvvvvvvvvvvvhhhh	chr2:240908471-240908737(-)$1	266	58	79	20.7726
eeeeyyyyyyyyyyyyyyyye	chr20:56978017-56978267(+)$1	250	40	61	20.4261
eeeettttttttttteeeeec	chr15:99312921-99313167(+)$1	246	136	157	20.6481
ggggvvvvvvvvvvvvvgggg	chr6:20967052-20967420(+)$1	368	63	84	22.2930
eeevvvvvvvvvvvvveeeee	chr2:242685348-242685637(+)$1	289	103	124	21.2297
ddddvvvvvvvvvvvvvdddd	chr5:31502574-31502855(-)$1	281	125	146	22.3821
gggguuuuuuuuuuuuggggg	chr2:11376502-11376805(-)$1	303	91	112	22.5132
ddddtttttttttttdddd>>	chr11:6506710-6507013(+)$1	303	98	119	20.5055
ff[auuuuuuuuuuuua]fff	chr13:100898186-100898470(+)$1	284	132	153	22.5195
ffffvvvvvvvvvvvvvffff	chr6:17979843-17980101(-)$1	258	180	201	21.7284
eeewwwwwwwwwwwwwweeee	chr10:65205032-65205318(-)$1	286	240	261	20.8932
ddddwwwwwwwwwwwwwwddd	chr16:81020324-81020566(-)$1	242	142	163	21.5155
ffffuuuuuuuuuuuufffff	chr19:32853932-32854224(+)$1	292	5	26	21.9179
bbyyyyyyyyyyyyyyyybb6	chr20:3327515-3327778(-)$1	263	168	189	19.0683

#otherMatches

#Seq PSSM
ugguagaucaugugcauccag	chr2:143777292-143777543(+)$1	251	133	154	20.8932
GGCUUUUCUUUUCACAGCCUU	chr10:77392825-77393073(+)$1	248	74	95	20.9425
uaacaaacagacccucuguua	chr2:58399594-58399863(-)$1	269	161	182	21.2879
gagcaaagagaaagcaugcuu	chr8:100293660-100293916(+)$1	256	31	52	20.3647
UCCUCUCUUUGUUCUUUAGGG	chr3:107384389-107384707(+)$1	318	45	66	21.7415
UGUGACUCAGAAACCCACAAA	chr3:71210189-71210442(-)$1	253	209	230	20.9769
gggcaguuuguuuguuuuuag	chr3:139082999-139083276(-)$1	277	172	193	20.2715
UUAUCACUCUUUCACCAGGCU	chr10:77731042-77731292(+)$1	250	180	201	19.2611
GUCCACAUUUGACUUAUAGGA	chr10:34534958-34535228(-)$1	270	216	237	20.9544
uagcucuuuccuuccccugca	chr16:52546589-52546828(-)$1	239	8	29	20.3928
GUGUUUUUCUUUCUCUGACAC	chr1:165812228-165812487(+)$1	259	92	113	20.7186
gaacuguuuuuccauuuguuu	chr2:188401802-188402068(-)$1	266	229	250	20.7726
uuggagguaaaaguguggaga	chr15:56500173-56500389(-)$1	216	122	143	21.5568
GUCUUUUAAACGUUGGGUGGG	chr12:72045908-72046182(-)$1	274	51	72	21.5155
aaucuuuuuuuucucugguug	chr3:194163404-194163657(-)$1	253	91	112	22.5132
gaggucacugauuauuuuccu	chr20:40061439-40061700(-)$1	261	19	40	21.5155
uccauucauuguaacuucugg	chr3:41249164-41249495(+)$1	331	37	58	21.5155
caugaauuuuagccuccauca	chr16:11798144-11798409(-)$1	265	152	173	23.1471
ggccucaagcaauccucuggc	chr10:34598165-34598421(-)$1	256	145	166	21.5155
GGGAACGCUCUGAUCAUCCCC	chr8:123928402-123928684(+)$1	282	244	265	22.7317
augacacgaucucagcucacu	chr11:86829431-86829648(+)$1	217	115	136	23.0969
guuaaauuuucuuucuaacag	chr11:86881428-86881718(+)$1	290	129	150	20.2345
aguucauucccuacuagacac	chr1:55553237-55553553(-)$1	316	164	185	19.6214
GAUAAUUCUUAUAAUAGCAGA	chr6:36071815-36072077(+)$1	262	35	56	19.3005
aauguuuuuguccccccauuu	chr14:55781659-55781907(+)$1	248	102	123	22.5114
CCCCACCCUGUAAAAGGGGAC	chr4:3197533-3197785(+)$1	252	132	153	21.0310
GCCCUAAUUGGAAUCCGGGAG	chr1:143449173-143449407(-)$1	234	29	50	23.1068
gaauuuuuaucucuguguuca	chr3:136620141-136620467(+)$1	326	14	35	22.6757
ACUGCCAUCCACUUUUGUAGU	chr6:138761761-138762019(-)$1	258	233	254	20.3647
gguuucuccaacuccuggccu	chr2:120909915-120910210(+)$1	295	125	146	22.2624
GCAAAUUAAUUUUGCUUUUGC	chr1:8521522-8521781(-)$1	259	189	210	20.7186
CCUCAUCCCCACCCUCCAGAG	chr12:1836560-1836867(+)$1	307	141	162	21.5155
cagucuaccucugauugcugc	chr2:58443133-58443381(-)$1	248	23	44	22.7236
auccuauuucucucucucgga	chr5:77036993-77037261(-)$1	268	196	217	20.6364
UCACCUCUUGCCCCCUGGUUC	chr7:73111192-73111445(+)$1	253	57	78	21.3483
uuucuauauugaccuugcaga	chr14:68495017-68495286(+)$1	269	90	111	22.4831
agggaaguucugaguauccuu	chr20:47902423-47902685(+)$1	262	213	234	20.8704
GUUUAUCAAUAUAUAAAAACA	chr10:17752733-17752987(+)$1	254	185	206	22.8671
cuucuccuuuaaagcuaugaa	chr6:147991550-147991778(+)$1	228	14	35	21.3493
gccauuuauuuuaauuuuugg	chr19:30454120-30454368(+)$1	248	176	197	21.5155
ucuuguuacuuccucuugugu	chr11:58363928-58364187(+)$1	259	152	173	18.9997
ucucugugucucucuuugagc	chr1:1995884-1996185(+)$1	301	265	286	22.7429
uagccugaugacuauaugcuu	chr6:145008872-145009113(+)$1	241	69	90	22.7855
auuugucaauaccuuaauuaa	chr22:28845520-28845759(-)$1	239	90	111	20.2715
gucuaccagcuguuaacggau	chr16:69176270-69176518(+)$1	248	135	156	22.3594
cuggcuauuuauauauuucuc	chr3:100126307-100126568(+)$1	261	152	173	20.2715
uuugcuuuucauacucuucac	chr2:46950054-46950293(+)$1	239	188	209	19.9962
uugcuuugccauacguugcaa	chr2:240908406-240908645(-)$1	239	125	146	22.3821
agcuguuuccuccuuuuaagc	chr16:75081521-75081780(+)$1	259	76	97	20.6364
UUGCCUUAAAUUGUCUGGCUU	chr20:45841554-45841798(-)$1	244	27	48	21.1057
aauguuucucuacuccguugu	chr4:124600510-124600754(+)$1	244	124	145	21.5018
CCUGAUUCUCCUUUCCCACGG	chr10:70524268-70524577(+)$1	309	130	151	21.8329
UGGCUCUUGACCCGGCUGUCA	chr9:96072125-96072418(+)$1	293	209	230	22.3594
uguguuucuaauaauucaucc	chr10:88544447-88544688(+)$1	241	51	72	22.8797
CGGUCCACAGAUAUCCACCAA	chr10:103431895-103432187(-)$1	292	36	57	22.7810
uuuuucauuuaauucuuagag	chr2:240908471-240908737(-)$1	266	58	79	20.7726
cucaaaaacaaaaacaaaGCU	chr20:56978017-56978267(+)$1	250	40	61	20.4261
UUUGUCUUGCUUAUUUAAACU	chr15:99312921-99313167(+)$1	246	136	157	20.6481
CAGACUCUUUUUAUUUUUUUG	chr6:20967052-20967420(+)$1	368	63	84	22.2930
ucuuuuucaucuccuuggaau	chr2:242685348-242685637(+)$1	289	103	124	21.2297
agcuuguuugugcucuuggcu	chr5:31502574-31502855(-)$1	281	125	146	22.3821
CUGGUAUCUUCUUUCUCUGGU	chr2:11376502-11376805(-)$1	303	91	112	22.5132
aggcugaauuuccuugccuuu	chr11:6506710-6507013(+)$1	303	98	119	20.5055
cuguaucaacuaucuaggggg	chr13:100898186-100898470(+)$1	284	132	153	22.5195
cuuuuuguuuucucccuaaag	chr6:17979843-17980101(-)$1	258	180	201	21.7284
gaccucuucccuccucuguca	chr10:65205032-65205318(-)$1	286	240	261	20.8932
uguuccaccaauaaacucaac	chr16:81020324-81020566(-)$1	242	142	163	21.5155
GGACUUUCUCCUCGUUGUCCU	chr19:32853932-32854224(+)$1	292	5	26	21.9179
gcuguuaacucuucaaauguu	chr20:3327515-3327778(-)$1	263	168	189	19.0683

#DB
(((..............))))	chr2:143777292-143777543(+)$1	1	133	154	20.8932
((((...........))))((	chr10:77392825-77393073(+)$1	1	74	95	20.9425
(((((...........)))))	chr2:58399594-58399863(-)$1	1	161	182	21.2879
(((((...........)))))	chr8:100293660-100293916(+)$1	1	31	52	20.3647
.(((..............)))	chr3:107384389-107384707(+)$1	1	45	66	21.7415
((((...........))))..	chr3:71210189-71210442(-)$1	1	209	230	20.9769
((((................)	chr3:139082999-139083276(-)$1	1	172	193	20.2715
................)))))	chr10:77731042-77731292(+)$1	1	180	201	19.2611
((((..............)))	chr10:34534958-34535228(-)$1	1	216	237	20.9544
..((..............)).	chr16:52546589-52546828(-)$1	1	8	29	20.3928
(((((...........)))))	chr1:165812228-165812487(+)$1	1	92	113	20.7186
((((.............))))	chr2:188401802-188402068(-)$1	1	229	250	20.7726
((.(...........).))))	chr15:56500173-56500389(-)$1	1	122	143	21.5568
((((..............)))	chr12:72045908-72046182(-)$1	1	51	72	21.5155
((((............)))))	chr3:194163404-194163657(-)$1	1	91	112	22.5132
((((..............)))	chr20:40061439-40061700(-)$1	1	19	40	21.5155
((((..............)))	chr3:41249164-41249495(+)$1	1	37	58	21.5155
.(((............))).)	chr16:11798144-11798409(-)$1	1	152	173	23.1471
((((..............)))	chr10:34598165-34598421(-)$1	1	145	166	21.5155
((((............)))).	chr8:123928402-123928684(+)$1	1	244	265	22.7317
.(((............))).)	chr11:86829431-86829648(+)$1	1	115	136	23.0969
((((...........))))))	chr11:86881428-86881718(+)$1	1	129	150	20.2345
.((((...........)).))	chr1:55553237-55553553(-)$1	1	164	185	19.6214
................)))).	chr6:36071815-36072077(+)$1	1	35	56	19.3005
((((............)))).	chr14:55781659-55781907(+)$1	1	102	123	22.5114
((((...........)))).)	chr4:3197533-3197785(+)$1	1	132	153	21.0310
.(((............)))))	chr1:143449173-143449407(-)$1	1	29	50	23.1068
((((............)))).	chr3:136620141-136620467(+)$1	1	14	35	22.6757
(((((...........)))))	chr6:138761761-138762019(-)$1	1	233	254	20.3647
((((............)))))	chr2:120909915-120910210(+)$1	1	125	146	22.2624
(((((...........)))))	chr1:8521522-8521781(-)$1	1	189	210	20.7186
((((..............)))	chr12:1836560-1836867(+)$1	1	141	162	21.5155
((((............)))).	chr2:58443133-58443381(-)$1	1	23	44	22.7236
.(((..............)))	chr5:77036993-77037261(-)$1	1	196	217	20.6364
..(((...........)))..	chr7:73111192-73111445(+)$1	1	57	78	21.3483
((((............).)))	chr14:68495017-68495286(+)$1	1	90	111	22.4831
(((((...........)))))	chr20:47902423-47902685(+)$1	1	213	234	20.8704
((((............)))))	chr10:17752733-17752987(+)$1	1	185	206	22.8671
((((..............).)	chr6:147991550-147991778(+)$1	1	14	35	21.3493
((((..............)))	chr19:30454120-30454368(+)$1	1	176	197	21.5155
................)))))	chr11:58363928-58364187(+)$1	1	152	173	18.9997
.(((.............))))	chr1:1995884-1996185(+)$1	1	265	286	22.7429
.(((.............))).	chr6:145008872-145009113(+)$1	1	69	90	22.7855
((((................)	chr22:28845520-28845759(-)$1	1	90	111	20.2715
((((.............))))	chr16:69176270-69176518(+)$1	1	135	156	22.3594
((((................)	chr3:100126307-100126568(+)$1	1	152	173	20.2715
..((................)	chr2:46950054-46950293(+)$1	1	188	209	19.9962
((((.............))))	chr2:240908406-240908645(-)$1	1	125	146	22.3821
.(((..............)))	chr16:75081521-75081780(+)$1	1	76	97	20.6364
..(((...........)))..	chr20:45841554-45841798(-)$1	1	27	48	21.1057
((((..............)))	chr4:124600510-124600754(+)$1	1	124	145	21.5018
((((............)).))	chr10:70524268-70524577(+)$1	1	130	151	21.8329
((((.............))))	chr9:96072125-96072418(+)$1	1	209	230	22.3594
.(((............))).)	chr10:88544447-88544688(+)$1	1	51	72	22.8797
.(((............)))..	chr10:103431895-103432187(-)$1	1	36	57	22.7810
((((.............))))	chr2:240908471-240908737(-)$1	1	58	79	20.7726
((((................)	chr20:56978017-56978267(+)$1	1	40	61	20.4261
((((...........)))))(	chr15:99312921-99313167(+)$1	1	136	157	20.6481
((((.............))))	chr6:20967052-20967420(+)$1	1	63	84	22.2930
(((.............)))))	chr2:242685348-242685637(+)$1	1	103	124	21.2297
((((.............))))	chr5:31502574-31502855(-)$1	1	125	146	22.3821
((((............)))))	chr2:11376502-11376805(-)$1	1	91	112	22.5132
((((...........))))..	chr11:6506710-6507013(+)$1	1	98	119	20.5055
((.(............).)))	chr13:100898186-100898470(+)$1	1	132	153	22.5195
((((.............))))	chr6:17979843-17980101(-)$1	1	180	201	21.7284
(((..............))))	chr10:65205032-65205318(-)$1	1	240	261	20.8932
((((..............)))	chr16:81020324-81020566(-)$1	1	142	163	21.5155
((((............)))))	chr19:32853932-32854224(+)$1	1	5	26	21.9179
((................)).	chr20:3327515-3327778(-)$1	1	168	189	19.0683

#PSSM
d : 0.27	f : 0.15	e : 0.13	[ : 0.11	g : 0.05	! : 0.04	y : 0.04	i : 0.04	= : 0.02	h : 0.02	: : 0.02	" : 0.01	$ : 0.01	b : 0.01	
d : 0.27	f : 0.15	c : 0.14	e : 0.13	g : 0.05	y : 0.04	i : 0.04	= : 0.02	h : 0.02	b : 0.02	! : 0.02	" : 0.01	$ : 0.01	
d : 0.24	c : 0.17	f : 0.14	e : 0.13	y : 0.05	b : 0.05	g : 0.05	i : 0.04	= : 0.02	h : 0.02	[ : 0.02	
d : 0.24	c : 0.17	f : 0.13	e : 0.07	y : 0.05	b : 0.05	a : 0.05	g : 0.05	i : 0.04	w : 0.02	= : 0.02	h : 0.02	v : 0.01	
u : 0.24	w : 0.23	v : 0.15	y : 0.13	t : 0.10	f : 0.02	e : 0.02	c : 0.02	= : 0.01	b : 0.01	g : 0.01	
u : 0.24	w : 0.23	t : 0.23	v : 0.15	y : 0.13	
u : 0.24	w : 0.23	t : 0.23	v : 0.15	y : 0.13	
u : 0.24	w : 0.23	t : 0.23	v : 0.15	y : 0.13	
u : 0.24	w : 0.23	t : 0.23	v : 0.15	y : 0.13	
u : 0.24	w : 0.23	t : 0.23	v : 0.15	y : 0.13	
u : 0.24	w : 0.23	t : 0.23	v : 0.15	y : 0.13	
u : 0.24	w : 0.23	t : 0.23	v : 0.15	y : 0.13	
u : 0.24	w : 0.23	t : 0.23	v : 0.15	y : 0.13	
u : 0.24	w : 0.23	t : 0.23	v : 0.15	y : 0.13	
u : 0.24	w : 0.23	t : 0.23	v : 0.15	y : 0.13	
u : 0.24	w : 0.23	v : 0.15	t : 0.13	y : 0.13	d : 0.05	a : 0.01	f : 0.01	e : 0.01	
w : 0.23	d : 0.14	v : 0.14	c : 0.10	y : 0.08	e : 0.07	f : 0.05	g : 0.04	b : 0.04	= : 0.02	a : 0.02	] : 0.01	
w : 0.20	d : 0.18	c : 0.13	e : 0.10	y : 0.08	f : 0.07	g : 0.05	b : 0.04	= : 0.02	h : 0.02	] : 0.02	i : 0.02	
d : 0.28	c : 0.17	f : 0.11	e : 0.10	y : 0.07	g : 0.07	i : 0.04	= : 0.02	b : 0.02	h : 0.02	] : 0.02	a : 0.01	
d : 0.26	f : 0.13	e : 0.10	c : 0.07	y : 0.07	g : 0.07	] : 0.07	b : 0.04	i : 0.04	= : 0.02	h : 0.02	2 : 0.02	4 : 0.01	3 : 0.01	> : 0.01	
f : 0.20	d : 0.18	e : 0.11	c : 0.08	g : 0.07	] : 0.05	b : 0.04	2 : 0.04	i : 0.04	= : 0.02	4 : 0.02	h : 0.02	3 : 0.02	> : 0.01	6 : 0.01	

#score	1476.143294603565
#seq	69
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_UTR_m2_run1.txt

#BEAR
cc[cccooooooccc]ccc22e	chr2:97535492-97535811(-)$1	319	96	118	7.1960
bccc[cccooooooccc]ccc]	chr11:75115614-75115831(+)$1	217	67	89	7.6606
d[ddddqqqqqqqqdddd]ddd	chr16:18801528-18801755(-)$1	227	31	53	10.4265
ffffffqqqqqqqqffffff::	chr11:618785-618994(-)$1	209	1	23	10.7515
dd[cccqqqqqqqqcccdddd:	chr11:72414339-72414544(-)$1	205	108	130	11.2431
ffffffqqqqqqqqffffffff	chr11:618794-619008(-)$1	214	15	37	12.1393
gggg[aqqqqqqqqa]gggggg	chr9:138901415-138901662(-)$1	247	175	197	12.8904
ggggggqqqqqqqqggggggg]	chr10:81074843-81075127(+)$1	284	151	173	12.7817
gg[cccqqqqqqqqccc22ggg	chr16:18800293-18800542(-)$1	249	25	47	12.8964
b[cccssssssssssccc]bbe	chr11:9481795-9482048(-)$1	253	23	45	10.7942
fffffssssssssssffffff]	chr4:39460410-39460632(-)$1	222	102	124	11.2913
gggggssssssssssggggggg	chr4:39459954-39460161(-)$1	207	184	206	11.3813

#otherMatches

#Seq PSSM
cuggcgggcgagcgcgggcagg	chr2:97535492-97535811(-)$1	319	96	118	7.1960
CCAGCUGUGUGCUAACAACUGU	chr11:75115614-75115831(+)$1	217	67	89	7.6606
CCGGGCCUUUGAAAGUCUCGCG	chr16:18801528-18801755(-)$1	227	31	53	10.4265
GGGUGCAGAAAACAGCACCUCC	chr11:618785-618994(-)$1	209	1	23	10.7515
GAAGGAGCUUGAGAUCCUCUGG	chr11:72414339-72414544(-)$1	205	108	130	11.2431
GGGUGCAGAAAACAGCACCUCC	chr11:618794-619008(-)$1	214	15	37	12.1393
CCUAGGAGACCUCCCGUGGGGC	chr9:138901415-138901662(-)$1	247	175	197	12.8904
CUGGAGACAAGCUCUUCCGGAG	chr10:81074843-81075127(+)$1	284	151	173	12.7817
CUUCCGCAGUGUAAUGGUUGGU	chr16:18800293-18800542(-)$1	249	25	47	12.8964
GACAGAAAGAGAGACCUGACCU	chr11:9481795-9482048(-)$1	253	23	45	10.7942
UUUGCUGCGUCUACUGCGAGGU	chr4:39460410-39460632(-)$1	222	102	124	11.2913
GCACGUUCCAAGCGUUGUGUGG	chr4:39459954-39460161(-)$1	207	184	206	11.3813

#DB
((.(((......))).)))..)	chr2:97535492-97535811(-)$1	1	96	118	7.1960
((((.(((......))).))).	chr11:75115614-75115831(+)$1	1	67	89	7.6606
(.((((........)))).)))	chr16:18801528-18801755(-)$1	1	31	53	10.4265
((((((........))))))..	chr11:618785-618994(-)$1	1	1	23	10.7515
((.(((........))))))).	chr11:72414339-72414544(-)$1	1	108	130	11.2431
((((((........))))))((	chr11:618794-619008(-)$1	1	15	37	12.1393
((((.(........).))))))	chr9:138901415-138901662(-)$1	1	175	197	12.8904
((((((........))))))).	chr10:81074843-81075127(+)$1	1	151	173	12.7817
((.(((........)))..)))	chr16:18800293-18800542(-)$1	1	25	47	12.8964
(.(((..........))).)))	chr11:9481795-9482048(-)$1	1	23	45	10.7942
(((((..........)))))).	chr4:39460410-39460632(-)$1	1	102	124	11.2913
(((((..........)))))))	chr4:39459954-39460161(-)$1	1	184	206	11.3813

#PSSM
g : 0.33	f : 0.25	b : 0.16	d : 0.16	c : 0.08	
g : 0.33	f : 0.25	c : 0.16	[ : 0.16	d : 0.08	
[ : 0.25	f : 0.25	g : 0.25	c : 0.16	d : 0.08	
c : 0.41	f : 0.25	g : 0.25	d : 0.08	
c : 0.33	f : 0.25	[ : 0.16	g : 0.16	d : 0.08	
c : 0.33	s : 0.25	f : 0.16	d : 0.08	a : 0.08	g : 0.08	
q : 0.58	s : 0.25	o : 0.08	c : 0.08	
q : 0.58	s : 0.25	o : 0.08	c : 0.08	
q : 0.58	s : 0.25	o : 0.16	
q : 0.58	s : 0.25	o : 0.16	
q : 0.58	s : 0.25	o : 0.16	
q : 0.58	s : 0.25	o : 0.16	
q : 0.58	s : 0.25	c : 0.08	o : 0.08	
q : 0.58	s : 0.25	c : 0.08	o : 0.08	
c : 0.33	s : 0.25	f : 0.16	d : 0.08	a : 0.08	g : 0.08	
c : 0.33	f : 0.25	] : 0.16	g : 0.16	d : 0.08	
c : 0.41	f : 0.25	g : 0.25	d : 0.08	
f : 0.25	g : 0.25	c : 0.16	d : 0.16	] : 0.08	2 : 0.08	
f : 0.25	g : 0.25	c : 0.16	] : 0.16	d : 0.08	2 : 0.08	
g : 0.33	f : 0.25	d : 0.16	2 : 0.08	c : 0.08	b : 0.08	
g : 0.33	d : 0.16	f : 0.16	2 : 0.08	c : 0.08	: : 0.08	b : 0.08	
] : 0.25	g : 0.25	e : 0.16	: : 0.16	d : 0.08	f : 0.08	

#score	131.45276610813335
#seq	12
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_transcript_m3_run1.txt

#BEAR
dddd!!cccqqqqqqqqccc]dddd	chr17:42269077-42269374(-)$1	297	86	111	15.7426
ddd"""cccqqqqqqqqccc22ddd	chr9:79001461-79001718(-)$1	257	201	226	15.7199
fffccccccqqqqqqqqccc333cc	chr1:231701834-231702068(+)$1	234	83	108	16.3156
gggggggbbqqqqqqqqbb]ggggg	chr8:110254698-110254997(-)$1	299	17	42	16.3263
ddd[a[cccqqqqqqqqccca]ddd	chr7:44618502-44618781(-)$1	279	61	86	15.8632
=========qqqqqqqq========	chr4:25419909-25420201(+)$1	292	182	207	17.8494
ffffffcccqqqqqqqqccc]ffff	chr16:68262465-68262707(+)$1	242	133	158	15.6064
[dddd[cccqqqqqqqqccc]dddd	chr1:117057063-117057348(-)$1	285	161	186	15.6131
eeeee!!bbqqqqqqqqbb]eeeee	chr5:118729263-118729557(+)$1	294	16	41	14.8843
dda[eeeeeqqqqqqqqeeeee]a]	chr1:32624900-32625128(+)$1	228	195	220	15.2396
ffff[ddddqqqqqqqqdddd]fff	chr21:37747803-37748049(+)$1	246	33	58	15.2360
ccc####bbqqqqqqqqbb22ccch	chr1:226171161-226171402(-)$1	241	56	81	15.1779
dddd[bbbbqqqqqqqqbb]bb]dd	chr12:57451693-57451934(-)$1	241	197	222	14.1227
ff[ffffffqqqqqqqqffffff66	chr1:169433117-169433384(-)$1	267	198	223	13.9735
###ffffffqqqqqqqqffffff33	chr11:2904740-2905006(-)$1	266	59	84	15.1681
gggggddddqqqqqqqqdddd22gg	chr1:19934963-19935215(+)$1	252	48	73	15.5974
cc"""ddddqqqqqqqqdddd22cc	chr1:230415755-230416030(+)$1	275	124	149	15.6644
ffffff[bbqqqqqqqqbb]fffff	chr15:52176712-52176950(+)$1	238	175	200	14.8832
::gggggggqqqqqqqqgggggggf	chr5:140895126-140895361(-)$1	235	95	120	14.4809
iiiiiiiiiqqqqqqqqiiiiiiii	chr7:155100715-155101017(+)$1	302	254	279	17.2814
iiiiiiibbqqqqqqqqbb]iiiii	chr6:159056161-159056408(+)$1	247	64	89	16.8165
=========qqqqqqqq========	chr2:152331862-152332081(+)$1	219	67	92	17.8494
$$$$eeeeeqqqqqqqqeeeee999	chr5:157213964-157214228(-)$1	264	134	159	12.5631
=========qqqqqqqq========	chrX:150156639-150156886(+)$1	247	181	206	17.8494
iiiiiiiiiqqqqqqqqiiiiiiii	chr16:677849-678103(+)$1	254	74	99	17.2814
##eeeee[aqqqqqqqqa]eeeee3	chr20:48740716-48740942(-)$1	226	103	128	15.3068
!!gggggggqqqqqqqqgggggggd	chr11:64894652-64894906(+)$1	254	9	34	16.5601
d!!ccccccqqqqqqqqccc]ccc3	chr17:73773605-73773847(-)$1	242	66	91	16.5437
bb[bb[cccqqqqqqqqccc]bb]b	chr20:17971356-17971655(+)$1	299	67	92	15.0158
::gggggggqqqqqqqqggggggg:	chr14:73586516-73586785(+)$1	269	94	119	13.6554
"""ccc[bbqqqqqqqqbb]ccc33	chr1:231499749-231500108(-)$1	359	22	47	16.1184
d[bb[ddddqqqqqqqqdddd]bb]	chr11:118620809-118621063(-)$1	254	70	95	14.7751
gggg"""bbqqqqqqqqbb22gggg	chr8:42885137-42885387(+)$1	250	200	225	15.8980
ii####cccqqqqqqqqccc4444i	chr15:89739635-89739941(+)$1	306	265	290	16.9507
dddd[ddddqqqqqqqqdddddddd	chr13:48650633-48650890(-)$1	257	23	48	14.6256
iiiiiii[aqqqqqqqqaiiiiiii	chr12:111157654-111157880(-)$1	226	63	88	17.2100
ccc!!ddddqqqqqqqqdddd]ccc	chr5:140699563-140699846(-)$1	283	114	139	15.8724
=======[aqqqqqqqqa]======	chr8:124333015-124333338(-)$1	323	109	134	17.5107
iiiiiiiiiqqqqqqqqiiiiiiii	chr13:113918751-113919006(+)$1	255	194	219	17.2814
::ddddcccqqqqqqqqccc]dddd	chr21:46225445-46225802(-)$1	357	44	69	13.4669
b$$$$$cccqqqqqqqqcccbb]a]	chr7:100882786-100883073(-)$1	287	86	111	15.0164
b"""eeeeeqqqqqqqqeeeee]bb	chr16:74481353-74481630(-)$1	277	145	170	15.0578
[a!!eeeeeqqqqqqqqeeeee22a	chr6:153291684-153291920(-)$1	236	18	43	15.3269
iiiiiiibbqqqqqqqqbb]iiiii	chr7:158525393-158525680(-)$1	287	77	102	16.8165
ffffff[bbqqqqqqqqbb]fffff	chrX:152961331-152961569(+)$1	238	101	126	14.8832
f"""eeeeeqqqqqqqqeeeeefff	chr1:51820219-51820465(-)$1	246	18	43	15.3647
dddd!!bbaqqqqqqqqa]bb4444	chr11:57584706-57584949(+)$1	243	129	154	14.9761
iiiiiiiiiqqqqqqqqiiiiiiii	chr2:182794806-182795050(+)$1	244	187	212	17.2814
cccdddd[aqqqqqqqqa]dddd]c	chr10:11926117-11926370(-)$1	253	8	33	15.1361
cccc[ddddqqqqqqqqdddd333c	chr8:124164169-124164415(+)$1	246	25	50	16.0541
fffff[cccqqqqqqqqcccfffff	chr4:187509041-187509299(-)$1	258	90	115	15.6835
iiiiiiiiiqqqqqqqqiiiiiiii	chr16:67134526-67134801(+)$1	275	241	266	17.2814
iiiiiiiiiqqqqqqqqiiiiiiii	chr4:147177455-147177690(-)$1	235	86	111	17.2814
iiiiiiiiiqqqqqqqqiiiiiiii	chr17:3827972-3828214(-)$1	242	187	212	17.2814
ffff!!cccqqqqqqqqccc22fff	chrX:44971299-44971587(+)$1	288	93	118	15.9152
gggggddddqqqqqqqqdddd]ggg	chr11:27516423-27516671(-)$1	248	58	83	15.9726
[a"""ddddqqqqqqqqdddd333a	chr5:78982092-78982379(+)$1	287	129	154	16.3583
iiiieeeeeqqqqqqqqeeeee666	chr20:62521910-62522182(+)$1	272	169	194	14.4551
fdddd[cccqqqqqqqqcccdddd:	chr8:99963973-99964236(+)$1	263	165	190	14.4973
!!gggggggqqqqqqqqggggggg9	chr19:57819165-57819429(+)$1	264	81	106	16.0383

#otherMatches

#Seq PSSM
GAUUUUUAUUUUUGCAUAUGUAAUC	chr17:42269077-42269374(-)$1	297	86	111	15.7426
UAUGUCUCCUUUUUGUUGGAUAAUG	chr9:79001461-79001718(-)$1	257	201	226	15.7199
AAUCCAGACCUUUAGUUGUCCCAUG	chr1:231701834-231702068(+)$1	234	83	108	16.3156
UAAAACAGGCUAGAAUCUCAUGUUU	chr8:110254698-110254997(-)$1	299	17	42	16.3263
GCAUGUGCCACAGAGCAGGCCCUGC	chr7:44618502-44618781(-)$1	279	61	86	15.8632
AGAAAUAAACAGUAAAUUUUAUUUU	chr4:25419909-25420201(+)$1	292	182	207	17.8494
UAGUGGUGUUAAAGCACACAUCCAU	chr16:68262465-68262707(+)$1	242	133	158	15.6064
UUGUAAAUAAAUGUAAAUAUGUACA	chr1:117057063-117057348(-)$1	285	161	186	15.6131
UCCUAACGGGUAACAGACCAUGGGA	chr5:118729263-118729557(+)$1	294	16	41	14.8843
GCUGCUUAAUUCAGACUUUGAGGAU	chr1:32624900-32625128(+)$1	228	195	220	15.2396
AUAUUUGUAAUUAAGCCUGCACAUA	chr21:37747803-37748049(+)$1	246	33	58	15.2360
gcuguaaucuguaauuugagaggcu	chr1:226171161-226171402(-)$1	241	56	81	15.1779
AGACCUAGCAUAUUUAAGCAUAAGU	chr12:57451693-57451934(-)$1	241	197	222	14.1227
aauaaauauuuuaCAGUAUAUUUUC	chr1:169433117-169433384(-)$1	267	198	223	13.9735
AGGUACACUGGUCCCAAGGUGUAAA	chr11:2904740-2905006(-)$1	266	59	84	15.1681
CCCCUCUGACAGCACUCUCAGGAAG	chr1:19934963-19935215(+)$1	252	48	73	15.5974
CCACAAAGCCGUUCGCAGCUUCCGG	chr1:230415755-230416030(+)$1	275	124	149	15.6644
uguucuggcuuuauuguguggggau	chr15:52176712-52176950(+)$1	238	175	200	14.8832
AGGAACUCUAAGACCACAGAGUUUU	chr5:140895126-140895361(-)$1	235	95	120	14.4809
AGACCUAAUUUGCAAGUAUUGGGUC	chr7:155100715-155101017(+)$1	302	254	279	17.2814
UUACAAAAUGACUGUAAAUAUUUGU	chr6:159056161-159056408(+)$1	247	64	89	16.8165
UAAGUAAAAUUGAACAUUUUUAUUU	chr2:152331862-152332081(+)$1	219	67	92	17.8494
ACUUUUGCUAAUGUUCCAGCAACAC	chr5:157213964-157214228(-)$1	264	134	159	12.5631
CUUGAUGCUCCUUGCUCGGCGUUGA	chrX:150156639-150156886(+)$1	247	181	206	17.8494
UAUAGAGAACACUUCACUUUUUUGU	chr16:677849-678103(+)$1	254	74	99	17.2814
UUUUAAAGGUGCUUGCUUGUUUAAU	chr20:48740716-48740942(-)$1	226	103	128	15.3068
CCUGGAGAUUCCAUUCCAUUUUCAA	chr11:64894652-64894906(+)$1	254	9	34	16.5601
GUACCGAAGUUCUUUUUCUUGUGGC	chr17:73773605-73773847(-)$1	242	66	91	16.5437
CAGUUUGAACAUCACAAUUCUAAGU	chr20:17971356-17971655(+)$1	299	67	92	15.0158
UAAUUUUUUUUUUUUGUAGAAAAUG	chr14:73586516-73586785(+)$1	269	94	119	13.6554
UUAUCUUUUUUAGGGUUAGUAGAAA	chr1:231499749-231500108(-)$1	359	22	47	16.1184
ACCAGUGAACUUUUUUUUUUAAUGU	chr11:118620809-118621063(-)$1	254	70	95	14.7751
AGGUGAAUGACUUGUUACAGAGCCU	chr8:42885137-42885387(+)$1	250	200	225	15.8980
UUGCCUUUGAUACCAAACAAUUCAA	chr15:89739635-89739941(+)$1	306	265	290	16.9507
GGCAUCAUAUUUCUUUUUGUGUGUC	chr13:48650633-48650890(-)$1	257	23	48	14.6256
UUUUUAAACUAAGAUCUGUUAAAAA	chr12:111157654-111157880(-)$1	226	63	88	17.2100
GAACUUCUUGUAAUUAAAAGAUUUC	chr5:140699563-140699846(-)$1	283	114	139	15.8724
UAUUUAUGUACAUAUUAAGAUAAAU	chr8:124333015-124333338(-)$1	323	109	134	17.5107
UACUUUUGAGAUAACAUUUAAAAGU	chr13:113918751-113919006(+)$1	255	194	219	17.2814
GAGGCUCCAUUGCUGCUUGGUGGCC	chr21:46225445-46225802(-)$1	357	44	69	13.4669
GCCUUCAGCUAAUUUCUGCUCCCCU	chr7:100882786-100883073(-)$1	287	86	111	15.0164
CUUUCUAUGUAUAAAAUCGUGGUGG	chr16:74481353-74481630(-)$1	277	145	170	15.0578
CCAACAGAAAUAUCAACUUCUGGAG	chr6:153291684-153291920(-)$1	236	18	43	15.3269
UGUGUGUCUGUAAAGAAAGAAUGCA	chr7:158525393-158525680(-)$1	287	77	102	16.8165
AGAGGAAGGAGCCCAAACCAUCCUC	chrX:152961331-152961569(+)$1	238	101	126	14.8832
AGAUUUUUAUCUUUUGUUAAAAUGU	chr1:51820219-51820465(-)$1	246	18	43	15.3647
GGCUUUGCCUCUUCUUUGUGCCUUU	chr11:57584706-57584949(+)$1	243	129	154	14.9761
AGAUGGAGAUGUUUCUUUUUCUGUC	chr2:182794806-182795050(+)$1	244	187	212	17.2814
caccacgugaugguuugcucgugcg	chr10:11926117-11926370(-)$1	253	8	33	15.1361
GAGACGGUCGAGAGAGAGACCUAUU	chr8:124164169-124164415(+)$1	246	25	50	16.0541
UCAUUUCUAGCUGUACAUAGGAUGA	chr4:187509041-187509299(-)$1	258	90	115	15.6835
UAUUAAGUUAUUGAUGCAAUUUGAU	chr16:67134526-67134801(+)$1	275	241	266	17.2814
CAGGAUUGUACAUACUAGCAAUUCU	chr4:147177455-147177690(-)$1	235	86	111	17.2814
CUUUCCCGGGAGACAAGUCGGGAAA	chr17:3827972-3828214(-)$1	242	187	212	17.2814
GAGUUCUGUAAUUUCAAACACUACU	chrX:44971299-44971587(+)$1	288	93	118	15.9152
AUAGCAUUUAAUAGAAGAAAUGGUU	chr11:27516423-27516671(-)$1	248	58	83	15.9726
GUGCCUGUAAAUUUAAAUAUAAAAA	chr5:78982092-78982379(+)$1	287	129	154	16.3583
GGCAGCCUCUUCCAGUUGAGGUGUU	chr20:62521910-62522182(+)$1	272	169	194	14.4551
UAUAUGCUAGUUUCUUGUAGAUAUU	chr8:99963973-99964236(+)$1	263	165	190	14.4973
uuugaaauguauauacucauuuuau	chr19:57819165-57819429(+)$1	264	81	106	16.0383

#DB
((((..(((........))).))))	chr17:42269077-42269374(-)$1	1	86	111	15.7426
(((...(((........)))..)))	chr9:79001461-79001718(-)$1	1	201	226	15.7199
(((((((((........)))...))	chr1:231701834-231702068(+)$1	1	83	108	16.3156
(((((((((........)).)))))	chr8:110254698-110254997(-)$1	1	17	42	16.3263
(((.(.(((........)))).)))	chr7:44618502-44618781(-)$1	1	61	86	15.8632
(((((((((........))))))))	chr4:25419909-25420201(+)$1	1	182	207	17.8494
(((((((((........))).))))	chr16:68262465-68262707(+)$1	1	133	158	15.6064
.((((.(((........))).))))	chr1:117057063-117057348(-)$1	1	161	186	15.6131
(((((..((........)).)))))	chr5:118729263-118729557(+)$1	1	16	41	14.8843
(((.(((((........))))).).	chr1:32624900-32625128(+)$1	1	195	220	15.2396
((((.((((........)))).)))	chr21:37747803-37748049(+)$1	1	33	58	15.2360
(((....((........))..)))(	chr1:226171161-226171402(-)$1	1	56	81	15.1779
((((.((((........)).)).))	chr12:57451693-57451934(-)$1	1	197	222	14.1227
((.((((((........))))))..	chr1:169433117-169433384(-)$1	1	198	223	13.9735
...((((((........))))))..	chr11:2904740-2905006(-)$1	1	59	84	15.1681
(((((((((........))))..))	chr1:19934963-19935215(+)$1	1	48	73	15.5974
((...((((........))))..))	chr1:230415755-230416030(+)$1	1	124	149	15.6644
((((((.((........)).)))))	chr15:52176712-52176950(+)$1	1	175	200	14.8832
..(((((((........)))))))(	chr5:140895126-140895361(-)$1	1	95	120	14.4809
(((((((((........))))))))	chr7:155100715-155101017(+)$1	1	254	279	17.2814
(((((((((........)).)))))	chr6:159056161-159056408(+)$1	1	64	89	16.8165
(((((((((........))))))))	chr2:152331862-152332081(+)$1	1	67	92	17.8494
....(((((........)))))...	chr5:157213964-157214228(-)$1	1	134	159	12.5631
(((((((((........))))))))	chrX:150156639-150156886(+)$1	1	181	206	17.8494
(((((((((........))))))))	chr16:677849-678103(+)$1	1	74	99	17.2814
..(((((.(........).))))).	chr20:48740716-48740942(-)$1	1	103	128	15.3068
..(((((((........))))))))	chr11:64894652-64894906(+)$1	1	9	34	16.5601
(..((((((........))).))).	chr17:73773605-73773847(-)$1	1	66	91	16.5437
((.((.(((........))).)).)	chr20:17971356-17971655(+)$1	1	67	92	15.0158
..(((((((........))))))).	chr14:73586516-73586785(+)$1	1	94	119	13.6554
...(((.((........)).)))..	chr1:231499749-231500108(-)$1	1	22	47	16.1184
(.((.((((........)))).)).	chr11:118620809-118621063(-)$1	1	70	95	14.7751
((((...((........))..))))	chr8:42885137-42885387(+)$1	1	200	225	15.8980
((....(((........)))....)	chr15:89739635-89739941(+)$1	1	265	290	16.9507
((((.((((........))))))))	chr13:48650633-48650890(-)$1	1	23	48	14.6256
(((((((.(........))))))))	chr12:111157654-111157880(-)$1	1	63	88	17.2100
(((..((((........)))).)))	chr5:140699563-140699846(-)$1	1	114	139	15.8724
(((((((.(........).))))))	chr8:124333015-124333338(-)$1	1	109	134	17.5107
(((((((((........))))))))	chr13:113918751-113919006(+)$1	1	194	219	17.2814
..(((((((........))).))))	chr21:46225445-46225802(-)$1	1	44	69	13.4669
(.....(((........))))).).	chr7:100882786-100883073(-)$1	1	86	111	15.0164
(...(((((........))))).))	chr16:74481353-74481630(-)$1	1	145	170	15.0578
.(..(((((........)))))..)	chr6:153291684-153291920(-)$1	1	18	43	15.3269
(((((((((........)).)))))	chr7:158525393-158525680(-)$1	1	77	102	16.8165
((((((.((........)).)))))	chrX:152961331-152961569(+)$1	1	101	126	14.8832
(...(((((........))))))))	chr1:51820219-51820465(-)$1	1	18	43	15.3647
((((..(((........).))....	chr11:57584706-57584949(+)$1	1	129	154	14.9761
(((((((((........))))))))	chr2:182794806-182795050(+)$1	1	187	212	17.2814
(((((((.(........).)))).)	chr10:11926117-11926370(-)$1	1	8	33	15.1361
((((.((((........))))...)	chr8:124164169-124164415(+)$1	1	25	50	16.0541
(((((.(((........))))))))	chr4:187509041-187509299(-)$1	1	90	115	15.6835
(((((((((........))))))))	chr16:67134526-67134801(+)$1	1	241	266	17.2814
(((((((((........))))))))	chr4:147177455-147177690(-)$1	1	86	111	17.2814
(((((((((........))))))))	chr17:3827972-3828214(-)$1	1	187	212	17.2814
((((..(((........)))..)))	chrX:44971299-44971587(+)$1	1	93	118	15.9152
(((((((((........)))).)))	chr11:27516423-27516671(-)$1	1	58	83	15.9726
.(...((((........))))...)	chr5:78982092-78982379(+)$1	1	129	154	16.3583
(((((((((........)))))...	chr20:62521910-62522182(+)$1	1	169	194	14.4551
)((((.(((........))))))).	chr8:99963973-99964236(+)$1	1	165	190	14.4973
..(((((((........))))))).	chr19:57819165-57819429(+)$1	1	81	106	16.0383

#PSSM
i : 0.19	f : 0.16	d : 0.15	c : 0.08	g : 0.06	= : 0.06	[ : 0.05	: : 0.05	b : 0.05	# : 0.03	! : 0.03	e : 0.01	$ : 0.01	" : 0.01	
i : 0.19	d : 0.15	f : 0.13	c : 0.08	g : 0.06	= : 0.06	: : 0.05	! : 0.05	" : 0.05	# : 0.03	$ : 0.03	a : 0.03	e : 0.01	b : 0.01	[ : 0.01	
i : 0.18	d : 0.15	g : 0.13	f : 0.11	" : 0.08	= : 0.06	c : 0.06	e : 0.03	[ : 0.03	# : 0.03	$ : 0.03	! : 0.03	a : 0.01	b : 0.01	
i : 0.18	d : 0.13	g : 0.13	f : 0.13	" : 0.08	c : 0.06	= : 0.06	[ : 0.03	e : 0.03	# : 0.03	$ : 0.03	b : 0.03	! : 0.03	
i : 0.16	e : 0.13	g : 0.11	f : 0.09	[ : 0.08	! : 0.06	" : 0.06	= : 0.06	d : 0.06	c : 0.05	# : 0.03	a : 0.01	b : 0.01	$ : 0.01	
d : 0.18	i : 0.16	e : 0.11	g : 0.08	[ : 0.08	f : 0.08	! : 0.06	= : 0.06	c : 0.05	" : 0.03	# : 0.03	b : 0.01	$ : 0.01	
c : 0.23	d : 0.16	i : 0.16	e : 0.11	g : 0.08	= : 0.06	[ : 0.05	b : 0.03	f : 0.03	! : 0.01	# : 0.01	" : 0.01	
c : 0.23	b : 0.18	d : 0.15	i : 0.11	e : 0.09	g : 0.06	[ : 0.06	= : 0.05	f : 0.03	
c : 0.23	b : 0.16	d : 0.15	i : 0.11	e : 0.09	a : 0.08	g : 0.06	= : 0.05	f : 0.03	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.23	b : 0.16	d : 0.15	i : 0.11	e : 0.09	a : 0.08	g : 0.06	= : 0.05	f : 0.03	
c : 0.23	b : 0.16	d : 0.15	i : 0.13	e : 0.09	g : 0.06	] : 0.06	= : 0.05	f : 0.03	
c : 0.23	d : 0.16	] : 0.13	i : 0.13	e : 0.11	= : 0.06	g : 0.06	2 : 0.03	f : 0.03	b : 0.01	
d : 0.18	i : 0.16	e : 0.13	] : 0.09	g : 0.08	f : 0.08	2 : 0.06	= : 0.06	b : 0.05	3 : 0.01	a : 0.01	c : 0.01	4 : 0.01	
i : 0.16	e : 0.13	d : 0.09	g : 0.09	f : 0.09	] : 0.08	2 : 0.06	= : 0.06	3 : 0.05	c : 0.05	b : 0.05	4 : 0.03	
i : 0.16	f : 0.15	d : 0.13	g : 0.11	= : 0.06	] : 0.06	c : 0.06	3 : 0.05	2 : 0.05	e : 0.03	b : 0.03	4 : 0.03	9 : 0.01	6 : 0.01	
i : 0.16	d : 0.13	g : 0.13	f : 0.11	c : 0.08	= : 0.06	3 : 0.06	e : 0.03	a : 0.03	6 : 0.03	] : 0.03	b : 0.03	4 : 0.03	9 : 0.01	2 : 0.01	
i : 0.18	d : 0.13	f : 0.13	c : 0.08	g : 0.06	= : 0.06	3 : 0.06	] : 0.05	6 : 0.03	9 : 0.03	b : 0.03	: : 0.03	a : 0.03	e : 0.01	h : 0.01	4 : 0.01	

#score	946.5773952488041
#seq	60
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_CDS_m2_run2.txt

#BEAR
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14226-14447(-)$1	221	108	148	49.5951
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14210-14418(-)$1	208	79	119	49.5951
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14247-14494(-)$1	247	155	195	49.5951
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14218-14424(-)$1	206	85	125	49.5951
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14201-14410(-)$1	209	71	111	49.5951

#otherMatches

#Seq PSSM
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14226-14447(-)$1	221	108	148	49.5951
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14210-14418(-)$1	208	79	119	49.5951
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14247-14494(-)$1	247	155	195	49.5951
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14218-14424(-)$1	206	85	125	49.5951
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14201-14410(-)$1	209	71	111	49.5951

#DB
).))))).).....)))))....))..)....))))))..	chrM:14226-14447(-)$1	1	108	148	49.5951
).))))).).....)))))....))..)....))))))..	chrM:14210-14418(-)$1	1	79	119	49.5951
).))))).).....)))))....))..)....))))))..	chrM:14247-14494(-)$1	1	155	195	49.5951
).))))).).....)))))....))..)....))))))..	chrM:14218-14424(-)$1	1	85	125	49.5951
).))))).).....)))))....))..)....))))))..	chrM:14201-14410(-)$1	1	71	111	49.5951

#PSSM
d : 1.00	
] : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
] : 1.00	
a : 1.00	
5 : 1.00	
5 : 1.00	
5 : 1.00	
5 : 1.00	
5 : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
b : 1.00	
b : 1.00	
2 : 1.00	
2 : 1.00	
a : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
2 : 1.00	
2 : 1.00	

#score	247.9758919659999
#seq	5
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_transcript_m3_run2.txt

#BEAR
::ccccccooooooccc]ccch	chr14:24028872-24029106(-)$1	234	79	101	10.2686
========oooooo========	chr19:15508243-15508535(-)$1	292	256	278	13.7755
eeccc[bboooooobb]ccc22	chr17:46056159-46056383(+)$1	224	173	195	11.2621
ccc[ddddoooooodddd]ccc	chr20:61459192-61459420(+)$1	228	31	53	11.6132
eee[ddddooooooddddeeee	chr6:41756882-41757157(+)$1	275	157	179	11.3583
ffffffbboooooobb]fffff	chr14:24909506-24909800(-)$1	294	266	288	10.7386
b"""ddddooooooddddbb]d	chr3:184099183-184099410(+)$1	227	95	117	10.9413
ffffddddoooooodddd333f	chr7:44605365-44605602(-)$1	237	120	142	11.3909
Dgggggggoooooogggggggc	chr16:70514716-70514983(-)$1	267	22	44	11.7410
cccc[cccooooooccccccgg	chr2:202031947-202032257(+)$1	310	238	260	12.4161
:ddddcccooooooccc]dddd	chr9:94991193-94991429(-)$1	236	172	194	10.6261
==========mmmm========	chrX:18913155-18913390(-)$1	235	3	25	8.7397
b!!eeeeeooooooeeeee]bb	chr2:242513230-242513496(+)$1	266	14	36	11.4214
fffeeeeeooooooeeeee22f	chr6:30513801-30514193(-)$1	392	282	304	11.1070
eeeee[bboooooobbeeeee7	chr2:27423763-27424024(-)$1	261	114	136	10.7855
ggg[a!!aooooooa22agggg	chr6:41752987-41753380(+)$1	393	224	246	11.9156
=======[ccclllccc]====	chr9:117004393-117004610(+)$1	217	123	145	8.3527
iiiiiiiiooooooiiiiiiii	chr9:130877266-130877601(-)$1	335	204	226	13.1983
========oooooo========	chr3:48601513-48601824(-)$1	311	79	101	13.7755
e[bb!!bboooooobb]bb]ee	chr4:83740152-83740422(-)$1	270	133	155	10.7296
eeeecccooooooccc]eeeee	chr3:49158675-49158895(-)$1	220	1	23	10.3789
!!ffffffooooooffffff44	chr16:22336437-22336686(+)$1	249	136	158	11.0622
"""eeeeeooooooeeeee22b	chr14:105176326-105176590(+)$1	264	226	248	11.4005
ddd!!cccooooooccc333dd	chr12:112194512-112194820(+)$1	308	53	75	12.1335
:gggggggooooooggggggge	chr19:10793708-10793966(+)$1	258	213	235	11.9281
[ccc[cccooooooccccccff	chr11:65746204-65746475(+)$1	271	23	45	12.2384
dgggggggooooooggggggg2	chr20:34091312-34091613(+)$1	301	229	251	12.4231
ffffff[aooooooa]ffffff	chr16:23491877-23492190(-)$1	313	221	243	10.8442
:gggggggooooooggggggg:	chr1:22149554-22149819(-)$1	265	106	128	10.9872
!gggggggooooooggggggg2	chr19:3205835-3206111(+)$1	276	72	94	12.6218
=========nnnnn========	chr7:150773932-150774227(-)$1	295	119	141	9.3711
iiiiiiiiooooooiiiiiiii	chr16:89265123-89265355(-)$1	232	52	74	13.1983
f####cccoooooocccfffff	chr17:47007716-47008075(-)$1	359	8	30	11.7779
####ddddoooooodddd333e	chr20:61920147-61920386(+)$1	239	203	225	11.7859
hh[eeeeeooooooeeeeehhh	chr9:117063463-117063670(+)$1	207	32	54	10.9026
dddd!!bboooooobb22dddd	chr20:61920764-61921006(+)$1	242	37	59	10.4174
eeeeecccooooooccc]eeee	chr12:50494102-50494371(+)$1	269	205	227	12.1429
eeeeddddoooooodddd]eee	chr3:50257776-50258044(+)$1	268	152	174	11.2599
[ccc!!bboooooobb]ccc]d	chr1:27677850-27678147(+)$1	297	78	100	11.8245
b!!eeeeeooooooeeeeebb]	chr1:19412538-19412790(-)$1	252	131	153	11.2795
bb[eeeeeooooooeeeee]bb	chr16:31201336-31201562(+)$1	226	121	143	11.0378
ccc[ddddoooooodddd333c	chr9:111655164-111655415(-)$1	251	111	133	11.9230
iiii[cccooooooccc22iii	chr14:21484873-21485211(-)$1	338	142	164	12.6852
=========nnnnn========	chr2:74592101-74592461(-)$1	360	77	99	9.3711
:gggggggooooooggggggg:	chr12:122233376-122233701(-)$1	325	3	25	10.9872
========oooooo========	chr9:140343520-140343820(-)$1	300	65	87	13.7755
eeeee[bboooooobb22eeee	chr20:61919850-61920130(+)$1	280	115	137	11.1315
Hddddcccooooooccc]dddd	chrM:9766-9977(+)$1	211	19	41	10.8976

#otherMatches

#Seq PSSM
CGACCACUUUCACCAGUCGGUG	chr14:24028872-24029106(-)$1	234	79	101	10.2686
CUGAUUUUCGGUGCAGGGUCAG	chr19:15508243-15508535(-)$1	292	256	278	13.7755
GUGGCUUCACUCCAGAUGCCUG	chr17:46056159-46056383(+)$1	224	173	195	11.2621
GGCCGUCUGGGAAGAGACUGCC	chr20:61459192-61459420(+)$1	228	31	53	11.6132
CUCAUGGCACCUCAGCCAGGGG	chr6:41756882-41757157(+)$1	275	157	179	11.3583
GGGGUCCUGAAUGGAGUGGCUC	chr14:24909506-24909800(-)$1	294	266	288	10.7386
CGCAGAGCGCAGCAGUUCGGAG	chr3:184099183-184099410(+)$1	227	95	117	10.9413
UGCUGGGCCCUUUAGCUCCUUG	chr7:44605365-44605602(-)$1	237	120	142	11.3909
CCUGCGGAUAGACUUCCGCAGU	chr16:70514716-70514983(-)$1	267	22	44	11.7410
accacugcacuucagcauggga	chr2:202031947-202032257(+)$1	310	238	260	12.4161
CGUCCUUUGACUCAAGAUGGAU	chr9:94991193-94991429(-)$1	236	172	194	10.6261
GCAUGCACGCCUGUGUGUGCAU	chrX:18913155-18913390(-)$1	235	3	25	8.7397
GACGCCUACAUUUCUAGGCACA	chr2:242513230-242513496(+)$1	266	14	36	11.4214
GCUCCAGGGUCCAGCCUGGCUG	chr6:30513801-30514193(-)$1	392	282	304	11.1070
CCGUUGUCCUGUCAGAAGCGGC	chr2:27423763-27424024(-)$1	261	114	136	10.7855
UGGACAACUCUACUGCGGCCGU	chr6:41752987-41753380(+)$1	393	224	246	11.9156
UGUCACUGGCCUGGGGUAGGUG	chr9:117004393-117004610(+)$1	217	123	145	8.3527
cuggcuGCGAGGAGGCAGCCAG	chr9:130877266-130877601(-)$1	335	204	226	13.1983
GUGCACGUGAGCGUGCGUGUGC	chr3:48601513-48601824(-)$1	311	79	101	13.7755
ACCUCUGCUUUCAUGCCAGUUC	chr4:83740152-83740422(-)$1	270	133	155	10.7296
CGCUCAGGACAAGCUGCAGCGG	chr3:49158675-49158895(-)$1	220	1	23	10.3789
GGAUGCACAAUCAGGUGUGUGA	chr16:22336437-22336686(+)$1	249	136	158	11.0622
GCAGGAGGGACAGGCCUCCGAA	chr14:105176326-105176590(+)$1	264	226	248	11.4005
GGCACGGUCACUUCACUUCAGC	chr12:112194512-112194820(+)$1	308	53	75	12.1335
AGCGCUUCGUCAUGGAGGUGCG	chr19:10793708-10793966(+)$1	258	213	235	11.9281
UGCUGCAGCCCUUUCUGAGUGG	chr11:65746204-65746475(+)$1	271	23	45	12.2384
UCCUGCAGCAGCAACUGCAGGA	chr20:34091312-34091613(+)$1	301	229	251	12.4231
AGAGGUAUGUUUGAAAGCUUCU	chr16:23491877-23492190(-)$1	313	221	243	10.8442
CCGAGGCGAUGCCACGCUUUGC	chr1:22149554-22149819(-)$1	265	106	128	10.9872
UUUUAAAACAUUGUUUUUGAAU	chr19:3205835-3206111(+)$1	276	72	94	12.6218
GCUGGUGUUGCGGGAACGCUGG	chr7:150773932-150774227(-)$1	295	119	141	9.3711
CUGCCCCUGAGCCUGGGGGUGG	chr16:89265123-89265355(-)$1	232	52	74	13.1983
CUGAAGCCAAAAUAGGUGUGGG	chr17:47007716-47008075(-)$1	359	8	30	11.7779
GCCUGGGCCCUUCAGCCCCUGU	chr20:61920147-61920386(+)$1	239	203	225	11.7859
caguuuccucaucuggaaaugg	chr9:117063463-117063670(+)$1	207	32	54	10.9026
GUGCCUGUUUCCACGCCAGCAC	chr20:61920764-61921006(+)$1	242	37	59	10.4174
ACAGUGUCCCUGUUGAUAACUG	chr12:50494102-50494371(+)$1	269	205	227	12.1429
ccugaggugacacagccuguag	chr3:50257776-50258044(+)$1	268	152	174	11.2599
AGCCGAGCCUCUCCGCAGGCGC	chr1:27677850-27678147(+)$1	297	78	100	11.8245
UUUUGCCACUUGCUUGGCAAGG	chr1:19412538-19412790(-)$1	252	131	153	11.2795
AGGAGGUGAGGAGCUACCUGCU	chr16:31201336-31201562(+)$1	226	121	143	11.0378
GCUCUGAAGUUAUAUUCACCAA	chr9:111655164-111655415(-)$1	251	111	133	11.9230
GCUUGGGCUGGGCUGCUUGGGG	chr14:21484873-21485211(-)$1	338	142	164	12.6852
AGAUUCUCUUUCACAGAGAGUU	chr2:74592101-74592461(-)$1	360	77	99	9.3711
AGGAGCCCUCCUAUGGGCUCCA	chr12:122233376-122233701(-)$1	325	3	25	10.9872
GGCUCCGGUCUCGCCUGGAGCC	chr9:140343520-140343820(-)$1	300	65	87	13.7755
CCCUCGGCCCUGAUGCAGGAGG	chr20:61919850-61920130(+)$1	280	115	137	11.1315
CGGCUCAACAUUUUUUGUAGCC	chrM:9766-9977(+)$1	211	19	41	10.8976

#DB
..((((((......))).)))(	chr14:24028872-24029106(-)$1	1	79	101	10.2686
((((((((......))))))))	chr19:15508243-15508535(-)$1	1	256	278	13.7755
(((((.((......)).)))..	chr17:46056159-46056383(+)$1	1	173	195	11.2621
(((.((((......)))).)))	chr20:61459192-61459420(+)$1	1	31	53	11.6132
(((.((((......))))))))	chr6:41756882-41757157(+)$1	1	157	179	11.3583
((((((((......)).)))))	chr14:24909506-24909800(-)$1	1	266	288	10.7386
(...((((......)))))).)	chr3:184099183-184099410(+)$1	1	95	117	10.9413
((((((((......))))...)	chr7:44605365-44605602(-)$1	1	120	142	11.3909
((((((((......)))))))(	chr16:70514716-70514983(-)$1	1	22	44	11.7410
)(((.(((......))))))((	chr2:202031947-202032257(+)$1	1	238	260	12.4161
.(((((((......))).))))	chr9:94991193-94991429(-)$1	1	172	194	10.6261
((((((((((....))))))))	chrX:18913155-18913390(-)$1	1	3	25	8.7397
(..(((((......))))).))	chr2:242513230-242513496(+)$1	1	14	36	11.4214
((((((((......)))))..)	chr6:30513801-30514193(-)$1	1	282	304	11.1070
(((((.((......))))))).	chr2:27423763-27424024(-)$1	1	114	136	10.7855
(((.(..(......)..)))))	chr6:41752987-41753380(+)$1	1	224	246	11.9156
(((((((.(((...))).))))	chr9:117004393-117004610(+)$1	1	123	145	8.3527
((((((((......))))))))	chr9:130877266-130877601(-)$1	1	204	226	13.1983
((((((((......))))))))	chr3:48601513-48601824(-)$1	1	79	101	13.7755
(.((..((......)).)).))	chr4:83740152-83740422(-)$1	1	133	155	10.7296
(((((((......))).)))))	chr3:49158675-49158895(-)$1	1	1	23	10.3789
..((((((......))))))..	chr16:22336437-22336686(+)$1	1	136	158	11.0622
...(((((......)))))..)	chr14:105176326-105176590(+)$1	1	226	248	11.4005
(((..(((......)))...))	chr12:112194512-112194820(+)$1	1	53	75	12.1335
.(((((((......)))))))(	chr19:10793708-10793966(+)$1	1	213	235	11.9281
.(((.(((......))))))))	chr11:65746204-65746475(+)$1	1	23	45	12.2384
((((((((......))))))).	chr20:34091312-34091613(+)$1	1	229	251	12.4231
((((((.(......).))))))	chr16:23491877-23492190(-)$1	1	221	243	10.8442
.(((((((......))))))).	chr1:22149554-22149819(-)$1	1	106	128	10.9872
.(((((((......))))))).	chr19:3205835-3206111(+)$1	1	72	94	12.6218
(((((((((.....))))))))	chr7:150773932-150774227(-)$1	1	119	141	9.3711
((((((((......))))))))	chr16:89265123-89265355(-)$1	1	52	74	13.1983
(....(((......))))))))	chr17:47007716-47008075(-)$1	1	8	30	11.7779
....((((......))))...)	chr20:61920147-61920386(+)$1	1	203	225	11.7859
((.(((((......))))))))	chr9:117063463-117063670(+)$1	1	32	54	10.9026
((((..((......))..))))	chr20:61920764-61921006(+)$1	1	37	59	10.4174
((((((((......))).))))	chr12:50494102-50494371(+)$1	1	205	227	12.1429
((((((((......)))).)))	chr3:50257776-50258044(+)$1	1	152	174	11.2599
.(((..((......)).))).)	chr1:27677850-27678147(+)$1	1	78	100	11.8245
(..(((((......))))))).	chr1:19412538-19412790(-)$1	1	131	153	11.2795
((.(((((......))))).))	chr16:31201336-31201562(+)$1	1	121	143	11.0378
(((.((((......))))...)	chr9:111655164-111655415(-)$1	1	111	133	11.9230
((((.(((......)))..)))	chr14:21484873-21485211(-)$1	1	142	164	12.6852
(((((((((.....))))))))	chr2:74592101-74592461(-)$1	1	77	99	9.3711
.(((((((......))))))).	chr12:122233376-122233701(-)$1	1	3	25	10.9872
((((((((......))))))))	chr9:140343520-140343820(-)$1	1	65	87	13.7755
(((((.((......))..))))	chr20:61919850-61920130(+)$1	1	115	137	11.1315
((((((((......))).))))	chrM:9766-9977(+)$1	1	19	41	10.8976

#PSSM
e : 0.16	= : 0.14	: : 0.10	f : 0.10	b : 0.08	c : 0.06	i : 0.06	d : 0.06	! : 0.04	[ : 0.04	D : 0.02	g : 0.02	" : 0.02	# : 0.02	h : 0.02	H : 0.02	
= : 0.14	e : 0.14	g : 0.14	c : 0.10	f : 0.08	d : 0.08	! : 0.06	i : 0.06	" : 0.04	# : 0.04	: : 0.02	[ : 0.02	h : 0.02	b : 0.02	
c : 0.14	= : 0.14	g : 0.14	e : 0.12	f : 0.10	d : 0.08	i : 0.06	" : 0.04	! : 0.04	# : 0.04	[ : 0.04	b : 0.02	
e : 0.22	= : 0.14	g : 0.12	c : 0.10	[ : 0.08	f : 0.08	d : 0.06	i : 0.06	# : 0.04	" : 0.02	b : 0.02	! : 0.02	
d : 0.18	e : 0.18	= : 0.14	g : 0.12	! : 0.08	c : 0.06	f : 0.06	[ : 0.06	i : 0.04	a : 0.02	# : 0.02	
c : 0.20	= : 0.14	d : 0.14	g : 0.12	e : 0.12	! : 0.08	[ : 0.06	f : 0.06	i : 0.04	
c : 0.20	= : 0.14	b : 0.14	d : 0.14	g : 0.12	e : 0.12	i : 0.04	! : 0.02	f : 0.02	[ : 0.02	
c : 0.18	b : 0.14	d : 0.14	= : 0.12	g : 0.12	e : 0.12	a : 0.04	i : 0.04	[ : 0.02	o : 0.02	f : 0.02	
o : 0.91	= : 0.06	c : 0.02	
o : 0.91	n : 0.04	= : 0.02	c : 0.02	
o : 0.91	n : 0.04	m : 0.02	c : 0.02	
o : 0.91	n : 0.04	m : 0.02	l : 0.02	
o : 0.91	n : 0.04	m : 0.02	l : 0.02	
o : 0.89	n : 0.04	m : 0.02	l : 0.02	c : 0.02	
c : 0.22	b : 0.14	d : 0.14	= : 0.12	g : 0.12	e : 0.12	a : 0.04	i : 0.04	f : 0.02	
c : 0.22	b : 0.14	d : 0.14	= : 0.12	g : 0.12	e : 0.12	i : 0.04	2 : 0.02	f : 0.02	] : 0.02	
c : 0.20	d : 0.14	e : 0.14	= : 0.12	g : 0.12	] : 0.10	2 : 0.06	i : 0.04	f : 0.04	
e : 0.16	d : 0.14	= : 0.12	g : 0.12	] : 0.10	c : 0.08	f : 0.08	2 : 0.06	i : 0.04	a : 0.02	b : 0.02	3 : 0.02	
e : 0.22	= : 0.14	g : 0.14	c : 0.10	f : 0.08	3 : 0.08	d : 0.06	] : 0.04	b : 0.04	i : 0.04	2 : 0.02	
= : 0.14	g : 0.14	c : 0.12	e : 0.12	f : 0.08	3 : 0.08	d : 0.06	] : 0.06	i : 0.06	b : 0.04	2 : 0.04	h : 0.02	
g : 0.16	= : 0.14	e : 0.14	f : 0.08	d : 0.08	2 : 0.06	3 : 0.06	b : 0.06	i : 0.06	c : 0.04	] : 0.04	4 : 0.02	h : 0.02	
e : 0.16	= : 0.14	f : 0.12	d : 0.12	2 : 0.06	c : 0.06	b : 0.06	i : 0.06	h : 0.04	g : 0.04	: : 0.04	7 : 0.02	4 : 0.02	] : 0.02	

#score	547.9462669650022
#seq	48
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_transcript_m1_run1.txt

#BEAR
####a!!a[gggggggooooooggggggg]a]a22dddd]	chr19:40791074-40791368(-)$1	294	224	264	13.9509
dddd[cccbb!!ccc[ccclllccc333ccc22bb]cccd	chr9:91926024-91926276(+)$1	252	203	243	13.2903
a]ddddddddccc[cccccclllccc]ccc]ccc4444dd	chr12:56122010-56122239(-)$1	229	27	67	12.0089
"iiiiiiiii[a####bbbbmmmmbb]bb333a]iiiiii	chr3:42845817-42846087(-)$1	270	74	114	11.4257
dddd[ccc!!ccc[cccoooooocccccc22ccc]ddddB	chr16:28962291-28962545(+)$1	254	189	229	14.9258
=====::gggggggddddoooooodddd4444ggggggg:	chr16:85647407-85647657(+)$1	250	118	158	12.4925
iiiiiiiii"""eeeeeooooooeeeee4444iiiiiiii	chr21:45739448-45739744(+)$1	296	187	227	16.1910
ggggggccc[ccc[cccccclllccc22ccc]cccccc]g	chr2:54197795-54198044(-)$1	249	154	194	14.0457
a[iiiiiiiii[bbaccclllccc]a]bb]iiiiiiiii]	chr18:77867064-77867406(+)$1	342	188	228	13.8928
aa!!cccggggggg[ddddllldddd]ggggggg]ccc22	chr2:74056016-74056285(+)$1	269	145	185	12.2028
e!!eeeee!!cccacccooooooccc]a]ccceeeee22e	chr17:4848975-4849220(-)$1	245	153	193	16.1472
hhhhhhh!!ccc!!cccccclllccc]ccc22ccc22hhh	chr12:49524976-49525276(-)$1	300	13	53	12.2856
dd[ggggggg[a[ddddoooooodddda]gggggggdddd	chr5:133707165-133707394(+)$1	229	17	57	15.3367
=========####bb[cccmmmmccc]bb4444=======	chr2:99224981-99225287(+)$1	306	35	75	14.2979
ggggg[dddd####cccooooooccc22dddd22gggggg	chrX:102940055-102940313(-)$1	258	62	102	16.7353
ffff"""bb!!bb[cccooooooccc333bb22bb4444f	chr10:327880-328116(-)$1	236	68	108	15.9691
ff[eeeee[bb[ddddoooooodddd]bb]eeeee]ffff	chr14:32954180-32954422(+)$1	242	39	79	13.1449
ddd"""bb"""cccrrrrrrrrrccc333bb333dddd44	chr11:2018862-2019127(-)$1	265	34	74	12.3202
a####dddd[ccc[ddddnnnnndddd]ccc22dddd333	chr12:30907473-30907727(-)$1	254	80	120	12.3340
iiiiiiii[ccc!!ddddooooooddddccc]iiiiiiii	chr1:245026464-245026712(-)$1	248	88	128	16.0981
[ggggggg[a[bb[cccooooooccc]bb]a22ggggggg	chr19:18547571-18547847(-)$1	276	115	155	18.2930
bb[a[ffffff"""cccooooooccc333ffffff]abb:	chr1:894494-894738(-)$1	244	120	160	14.5164
========####ccc[aannnnna]a]ccc]=========	chrX:153686525-153686889(+)$1	364	215	255	15.3237
ee"""ggggggg!!cccmmmmccc333ggggggg]eeeee	chr22:21348451-21348719(+)$1	268	149	189	12.6868
####bb[ccc[eeeeebboooooobb]eeeee]ccc333b	chr3:195808608-195808869(-)$1	261	74	114	13.1044
==="""a!!eeeee[bboooooobb]eeeee22a22====	chr7:148580695-148580982(-)$1	287	177	217	14.4630
b[ccc[ffffff!!cccooooooccc4444ffffff]ccc	chr2:37551767-37552043(-)$1	276	62	102	15.9818
===:eeeeeeeeeecccooooooccc22eeeee22eeeee	chr14:76070447-76070691(+)$1	244	131	171	13.7353
d[bb!!eeeee[ddddoooooodddd]eeeee]bb]dddd	chr8:139815533-139815792(-)$1	259	115	155	12.9044
"ggggggg[ccc[eeeeeooooooeeeeeccc]ggggggg	chr21:38445482-38445750(+)$1	268	167	207	14.3894
d[a[dddd[eeeee[aooooooa]eeeee]dddd]a]ddd	chr1:1243139-1243406(-)$1	267	117	157	12.5378
=========="""ddddoooooodddd4444=========	chr1:46269162-46269470(+)$1	308	228	268	17.9312
ddddd:hhhhhhhhcccooooooccc4444hhhhhhhhee	chr19:2270097-2270374(+)$1	277	170	210	12.7327
[a[ddddccc####cccmmmmccc333ccc]dddd]aeee	chr2:85768646-85768907(+)$1	261	87	127	12.1009
[iiiiiiiii####accclllccc]a4444iiiiiiiii]	chr11:9610918-9611185(+)$1	267	125	165	15.2300
ccc"""bb!!dddd"""annnnna333dddd22bb333cc	chr7:50860986-50861256(-)$1	270	104	144	12.2846
gggggggccc[ffffffooooooffffff]cccbb[eeee	chr7:23571471-23571699(-)$1	228	80	120	13.3391
!ggggggg"""cccddddnnnnndddd]ccc]gggggggb	chr19:49606801-49607061(+)$1	260	169	209	13.3577
dd[a[ccc[ccc[dddd[aooooooa]dddd22ccc333c	chr1:247094690-247094957(-)$1	267	55	95	14.7027
d[eeeee[bb[bb[cccooooooccc]bbbb22eeeee]d	chr6:74230222-74230457(-)$1	235	122	162	15.5299
a[dddd!!a!!dddd!!aooooooa22dddd22a22dddd	chr17:16284315-16284596(+)$1	281	195	235	14.0968
fffff!!ccc[a[ddddoooooodddd]a]ccc4444fff	chr2:169746726-169747035(-)$1	309	142	182	14.9390
ee!!ccc"""ccc[ccclllcccccc22ccc]eeeee]ee	chr17:76123907-76124141(-)$1	234	17	57	13.3102
ffffff[eeeee!!a[aooooooaa22eeeee]ffffffe	chr17:43024913-43025181(-)$1	268	126	166	13.7526
c[bb!!ccc[bbddddoooooodddd]bb]ccc333bb]c	chr11:85779964-85780214(-)$1	250	205	245	14.1092
cccbb[a[bb[bb[cccooooooccc]bb]bb]a]bb]cc	chr20:57582109-57582398(-)$1	289	125	165	15.2962
cccccc[ddddbb[cccooooooccc]bb]ddddccc:CC	chr11:568074-568367(-)$1	293	132	172	12.2300
ddggggggg!!ffffffooooooffffff333ggggggg7	chr2:97559887-97560117(-)$1	230	86	126	14.3818
[bb[dddd[bb!!cccooooooccc22bb]dddd]bb]bb	chr2:230786504-230786756(-)$1	252	88	128	13.2336
[dddd[bb[a"""cccooooooccca]bbdddd]eeeee2	chr19:18548493-18548757(-)$1	264	146	186	14.6967
$$ffffffbb"""ddddoooooodddd4444bb]ffffff	chr11:63743809-63744093(+)$1	284	24	64	13.4809
eeeee[ffffff"""bboooooobb4444ffffffeeeee	chr2:74405843-74406102(-)$1	259	72	112	13.3388
hhhheeeee!!bb!!cccnnnnnccc22bb22eeeee22h	chr6:33171732-33172006(+)$1	274	131	171	11.6787
&&&&ccc!!dddd[cccooooooccc]dddd22cccffff	chr7:102119210-102119445(-)$1	235	56	96	13.7375

#otherMatches

#Seq PSSM
GUGGCGAUGGGCGGGGGUAGAGCCCCGCCGGAGAGGCUGG	chr19:40791074-40791368(-)$1	294	224	264	13.9509
CUACUCGGACAAGUACUUCGACGAACACUACGAGUACCGG	chr9:91926024-91926276(+)$1	252	203	243	13.2903
AGGGCCGGCCGGGAGCCCGGAAACCGAGGUCCCCCUUCGG	chr12:56122010-56122239(-)$1	229	27	67	12.0089
GCUGUGGGUGGGGAGAAGCCGGGAGGACUGGGUGCGCCUG	chr3:42845817-42846087(-)$1	270	74	114	11.4257
UGGUCACCGACAGCGAUGAGGAAAUUCUGGAGGUCGCCAC	chr16:28962291-28962545(+)$1	254	189	229	14.9258
CCCCCUCCCCGACCCCUUGUCUCGGGGGAGUUGGUCGGGA	chr16:85647407-85647657(+)$1	250	118	158	12.4925
CAGGCGUCCUGGCGGCCGGGUCAGGCUGGAUUGGACGUCU	chr21:45739448-45739744(+)$1	296	187	227	16.1910
Agcccccggagccgggcgggcgucccgagccgggcccgcg	chr2:54197795-54198044(-)$1	249	154	194	14.0457
ggcgggcgcaggcggccccACGGGACGCGGCUGCGCUCGG	chr18:77867064-77867406(+)$1	342	188	228	13.8928
CCGAGCGUGGUUGGACUUUGAAGGGGAUCGGCCGCCGUGA	chr2:74056016-74056285(+)$1	269	145	185	12.2028
GCUGGGGGCCAGGGCUGGAUGGACAGACACCUCCCCCUAC	chr17:4848975-4849220(-)$1	245	153	193	16.1472
GAGGGGCCAGCGACCGCGGCACCGCCUGUGCCCGCCCGCC	chr12:49524976-49525276(-)$1	300	13	53	12.2856
cggcggcggcggcgAUCCACAGUGAUUcggccgccgcgcc	chr5:133707165-133707394(+)$1	229	17	57	15.3367
GGGGGCCGAGAGGUGGCGCGUCCGCGGCGGAAGUCGGUUC	chr2:99224981-99225287(+)$1	306	35	75	14.2979
GAAAGCCAUAUCUCAUAUCUUUUUAUUUUAUGUUCUUUCU	chrX:102940055-102940313(-)$1	258	62	102	16.7353
ccugaacgcgcccaaucucgucugaucucggaagcuaagc	chr10:327880-328116(-)$1	236	68	108	15.9691
GUGUUUAUGGGUUUAAGUCCAAUUGAUCUAGUAAGGGCUU	chr14:32954180-32954422(+)$1	242	39	79	13.1449
CCCGGGCUAGGACCGAGGAGCAGGGUGAGGGAGGGGGUGG	chr11:2018862-2019127(-)$1	265	34	74	12.3202
GAGGGAGGCGGCUGACCCGGCGAGGGUGGGCAGGUCUGGG	chr12:30907473-30907727(-)$1	254	80	120	12.3340
ccgcgggcgggcggcgggagggagcccggucggcccgcgg	chr1:245026464-245026712(-)$1	248	88	128	16.0981
AGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUCCC	chr19:18547571-18547847(-)$1	276	115	155	18.2930
GGCAGCUGCGGGGAGCCGCAAGAGGUAAGCCGCGGGUCCG	chr1:894494-894738(-)$1	244	120	160	14.5164
CGGCCACCCGGAGCCAGCGGAGGGACAGGUAGGUGGCCGU	chrX:153686525-153686889(+)$1	364	215	255	15.3237
GUGCGGGCAGCAGAGCCAAAaggugggugcugccagcccu	chr22:21348451-21348719(+)$1	268	149	189	12.6868
GAAAGCGGUCGCGGCCCCAGGCGGGGCGGCCGGGAUGGAG	chr3:195808608-195808869(-)$1	261	74	114	13.1044
UCCGCACUCAGACAAAGGACGGACUGUGUCUCCGGAGGGC	chr7:148580695-148580982(-)$1	287	177	217	14.4630
cccccgcccuccggccccAGGACGGGACGGGGAGGGAGGG	chr2:37551767-37552043(-)$1	276	62	102	15.9818
gggccugguuaguacuuggaugggagaAUACUGUCGCUAG	chr14:76070447-76070691(+)$1	244	131	171	13.7353
ucggaagcuaagcagggucgggccugguuaguacuuggau	chr8:139815533-139815792(-)$1	259	115	155	12.9044
GGGCGGCGGGCCCGGGUGAGUGCACACCCGGCGCGCUGCC	chr21:38445482-38445750(+)$1	268	167	207	14.3894
gaggcggcgcgggcgggacgagcgguccgggccggcgcgg	chr1:1243139-1243406(-)$1	267	117	157	12.5378
UCGCGGCGCCGGAGGCCCCAGAAGGCUCGAAGGCGCCGCG	chr1:46269162-46269470(+)$1	308	228	268	17.9312
GGCCCGCGGGGCUGGUGAAUCUGCACUUUUCGGUCCCGGC	chr19:2270097-2270374(+)$1	277	170	210	12.7327
AUGUUGUGUUUUUUGCUUAUAGGUUUUGACUACAAGACUU	chr2:85768646-85768907(+)$1	261	87	127	12.1009
UUUGUGUAUAUAAACCGAUCUUCGUGAUACUGUACAUAGC	chr11:9610918-9611185(+)$1	267	125	165	15.2300
UCGGGAGGAGGCAGAGAGGGAAGCGAGCUGCGGCCGGGCG	chr7:50860986-50861256(-)$1	270	104	144	12.2846
UUCUGGCGGCGCCGGCGCCAUUUUGCUGGAGCCUGCGACC	chr7:23571471-23571699(-)$1	228	80	120	13.3391
UUUGGCCUUCAUGACAGCCCCACGUUGAUCACAGGCCAGG	chr19:49606801-49607061(+)$1	260	169	209	13.3577
GCGCGCUCACCCGCCCCGUUCAGGUAGGGGGAAGGGAGGG	chr1:247094690-247094957(-)$1	267	55	95	14.7027
GGCCCGUGCGUCCCAGCGCACAUGUUCGGCGAGGCGGGGC	chr6:74230222-74230457(-)$1	235	122	162	15.5299
AGCCGUAACGACCUUGGGGGGGUGUGAGAGGGGGGAAUGG	chr17:16284315-16284596(+)$1	281	195	235	14.0968
CUGUUGGCUAGAGUGGGCGCGGAUCUGGUGUGGGGAAGGC	chr2:169746726-169747035(-)$1	309	142	182	14.9390
CUUAGAAGGGCCUGUCUGGAGGAAGGGAUUCCAGCUCUAG	chr17:76123907-76124141(-)$1	234	17	57	13.3102
UGGUGUGGCUGUGGGACCCGUGAGCAAGCAGCGACGCCAG	chr17:43024913-43025181(-)$1	268	126	166	13.7526
GGGUGACACGAGCCGGUUCUCUCUGGACUGGUGGCAGCGC	chr11:85779964-85780214(-)$1	250	205	245	14.1092
aggccggggcgggauccagagcgggagccggcgcgggauc	chr20:57582109-57582398(-)$1	289	125	165	15.2962
GAGGGGACGGGGGUGGGGUCAAUCCCUCCGCCCGCCCACC	chr11:568074-568367(-)$1	293	132	172	12.2300
GUGGGGGAGCUGGGUAUGUUUGGGUACCCCUCCUCUccug	chr2:97559887-97560117(-)$1	230	86	126	14.3818
gggggUGGGGGGAGCUAGUGGAAGUUACUGCCGCGCCACC	chr2:230786504-230786756(-)$1	252	88	128	13.2336
AGGGCACGGGACCCGGGAUUCACUGCGCGGCCUGUCUUCA	chr19:18548493-18548757(-)$1	264	146	186	14.6967
CACCGGCCCAUCCUGGUCAUGUUACUGCAUUUGUGGCCGG	chr11:63743809-63744093(+)$1	284	24	64	13.4809
CUCGCGAGAUUUUGUUGGUUCCGCAUUUCGGGUCUGCGAG	chr2:74405843-74406102(-)$1	259	72	112	13.3388
CAGGGGGUGAUGGCAGCCUACCUGGUGUCCCCUACCCCAC	chr6:33171732-33172006(+)$1	274	131	171	11.6787
UAAUCCGGAAGAGGCCUCUUAUUAGGGCUCUGGUGGCGGC	chr7:102119210-102119445(-)$1	235	56	96	13.7375

#DB
....(..(.(((((((......))))))).).)..)))).	chr19:40791074-40791368(-)$1	1	224	264	13.9509
((((.(((((..(((.(((...)))...)))..)).))))	chr9:91926024-91926276(+)$1	1	203	243	13.2903
).))))(((((((.((((((...))).))).)))....))	chr12:56122010-56122239(-)$1	1	27	67	12.0089
.(((((((((.(....((((....)).))...).))))))	chr3:42845817-42846087(-)$1	1	74	114	11.4257
((((.(((..(((.(((......))))))..))).)))))	chr16:28962291-28962545(+)$1	1	189	229	14.9258
)))))..(((((((((((......))))....))))))).	chr16:85647407-85647657(+)$1	1	118	158	12.4925
(((((((((...(((((......)))))....))))))))	chr21:45739448-45739744(+)$1	1	187	227	16.1910
(((((((((.(((.((((((...)))..))).)))))).)	chr2:54197795-54198044(-)$1	1	154	194	14.0457
(.(((((((((.((((((...))).).)).))))))))).	chr18:77867064-77867406(+)$1	1	188	228	13.8928
((..((((((((((.((((...)))).))))))).)))..	chr2:74056016-74056285(+)$1	1	145	185	12.2028
(..(((((..(((((((......))).).))))))))..)	chr17:4848975-4849220(-)$1	1	153	193	16.1472
(((((((..(((..((((((...))).)))..)))..)))	chr12:49524976-49525276(-)$1	1	13	53	12.2856
((.(((((((.(.((((......))))).)))))))))))	chr5:133707165-133707394(+)$1	1	17	57	15.3367
(((((((((....((.(((....))).))....)))))))	chr2:99224981-99225287(+)$1	1	35	75	14.2979
(((((.((((....(((......)))..))))..))))))	chrX:102940055-102940313(-)$1	1	62	102	16.7353
((((...((..((.(((......)))...))..))....)	chr10:327880-328116(-)$1	1	68	108	15.9691
((.(((((.((.((((......)))).)).))))).))))	chr14:32954180-32954422(+)$1	1	39	79	13.1449
(((...((...(((.........)))...))...))))..	chr11:2018862-2019127(-)$1	1	34	74	12.3202
(....((((.(((.((((.....)))).)))..))))...	chr12:30907473-30907727(-)$1	1	80	120	12.3340
((((((((.(((..((((......))))))).))))))))	chr1:245026464-245026712(-)$1	1	88	128	16.0981
.(((((((.(.((.(((......))).)).)..)))))))	chr19:18547571-18547847(-)$1	1	115	155	18.2930
((.(.((((((...(((......)))...)))))).))).	chr1:894494-894738(-)$1	1	120	160	14.5164
((((((((....(((.((.....).).))).)))))))))	chrX:153686525-153686889(+)$1	1	215	255	15.3237
((...(((((((..(((....)))...))))))).)))))	chr22:21348451-21348719(+)$1	1	149	189	12.6868
....((.(((.(((((((......)).))))).)))...)	chr3:195808608-195808869(-)$1	1	74	114	13.1044
(((...(..(((((.((......)).)))))..)..))))	chr7:148580695-148580982(-)$1	1	177	217	14.4630
(.(((.((((((..(((......)))....)))))).)))	chr2:37551767-37552043(-)$1	1	62	102	15.9818
))).(((((((((((((......)))..)))))..)))))	chr14:76070447-76070691(+)$1	1	131	171	13.7353
(.((..(((((.((((......)))).))))).)).))))	chr8:139815533-139815792(-)$1	1	115	155	12.9044
.(((((((.(((.(((((......)))))))).)))))))	chr21:38445482-38445750(+)$1	1	167	207	14.3894
(.(.((((.(((((.(......).))))).)))).).)))	chr1:1243139-1243406(-)$1	1	117	157	12.5378
((((((((((...((((......))))....)))))))))	chr1:46269162-46269470(+)$1	1	228	268	17.9312
))))).(((((((((((......)))....))))))))((	chr19:2270097-2270374(+)$1	1	170	210	12.7327
.(.(((((((....(((....)))...))).)))).))))	chr2:85768646-85768907(+)$1	1	87	127	12.1009
.(((((((((....((((...))).)....))))))))).	chr11:9610918-9611185(+)$1	1	125	165	15.2300
(((...((..((((...(.....)...))))..))...))	chr7:50860986-50861256(-)$1	1	104	144	12.2846
)))))))(((.((((((......)))))).)))((.((((	chr7:23571471-23571699(-)$1	1	80	120	13.3391
.(((((((...(((((((.....)))).))).))))))))	chr19:49606801-49607061(+)$1	1	169	209	13.3577
((.(.(((.(((.((((.(......).))))..)))...)	chr1:247094690-247094957(-)$1	1	55	95	14.7027
(.(((((.((.((.(((......))).))))..))))).)	chr6:74230222-74230457(-)$1	1	122	162	15.5299
(.((((..(..((((..(......)..))))..)..))))	chr17:16284315-16284596(+)$1	1	195	235	14.0968
(((((..(((.(.((((......)))).).)))....)))	chr2:169746726-169747035(-)$1	1	142	182	14.9390
((..(((...(((.(((...))))))..))).))))).))	chr17:76123907-76124141(-)$1	1	17	57	13.3102
((((((.(((((..(.(......))..))))).)))))))	chr17:43024913-43025181(-)$1	1	126	166	13.7526
(.((..(((.((((((......)))).)).)))...)).)	chr11:85779964-85780214(-)$1	1	205	245	14.1092
(((((.(.((.((.(((......))).)).)).).)).))	chr20:57582109-57582398(-)$1	1	125	165	15.2962
)))(((.((((((.(((......))).)).))))))).))	chr11:568074-568367(-)$1	1	132	172	12.2300
(((((((((..((((((......))))))...))))))).	chr2:97559887-97560117(-)$1	1	86	126	14.3818
.((.((((.((..(((......)))..)).)))).)).))	chr2:230786504-230786756(-)$1	1	88	128	13.2336
.((((.((.(...(((......)))).)))))).))))).	chr19:18548493-18548757(-)$1	1	146	186	14.6967
..((((((((...((((......))))....)).))))))	chr11:63743809-63744093(+)$1	1	24	64	13.4809
(((((.((((((...((......))....)))))))))))	chr2:74405843-74406102(-)$1	1	72	112	13.3388
(((((((((..((..(((.....)))..))..)))))..)	chr6:33171732-33172006(+)$1	1	131	171	11.6787
....(((..((((.(((......))).))))..)))))))	chr7:102119210-102119445(-)$1	1	56	96	13.7375

#PSSM
d : 0.18	= : 0.11	a : 0.09	[ : 0.09	e : 0.07	f : 0.07	c : 0.07	g : 0.05	# : 0.03	" : 0.03	i : 0.03	h : 0.03	b : 0.03	! : 0.01	$ : 0.01	& : 0.01	
d : 0.14	[ : 0.12	= : 0.11	g : 0.11	i : 0.07	f : 0.07	# : 0.05	e : 0.05	c : 0.05	a : 0.03	h : 0.03	b : 0.03	] : 0.01	! : 0.01	$ : 0.01	& : 0.01	
d : 0.12	g : 0.12	= : 0.11	i : 0.09	[ : 0.09	f : 0.07	c : 0.07	# : 0.05	! : 0.05	b : 0.05	h : 0.03	e : 0.03	" : 0.01	a : 0.01	& : 0.01	
g : 0.14	d : 0.12	i : 0.09	= : 0.07	e : 0.07	f : 0.07	" : 0.07	# : 0.05	b : 0.05	! : 0.03	h : 0.03	a : 0.03	c : 0.03	[ : 0.03	: : 0.01	& : 0.01	
g : 0.14	d : 0.12	e : 0.11	i : 0.09	c : 0.09	" : 0.09	[ : 0.07	= : 0.07	f : 0.05	b : 0.03	! : 0.03	a : 0.01	h : 0.01	# : 0.01	
g : 0.14	c : 0.12	d : 0.11	i : 0.09	e : 0.09	[ : 0.09	! : 0.07	" : 0.07	= : 0.05	f : 0.05	: : 0.03	h : 0.01	b : 0.01	
c : 0.14	g : 0.12	d : 0.11	e : 0.11	i : 0.09	f : 0.07	! : 0.05	= : 0.05	b : 0.05	[ : 0.05	h : 0.03	a : 0.03	: : 0.01	" : 0.01	
c : 0.16	g : 0.14	d : 0.11	e : 0.11	i : 0.09	! : 0.07	b : 0.07	f : 0.07	= : 0.05	[ : 0.03	a : 0.01	h : 0.01	" : 0.01	
[ : 0.16	! : 0.11	c : 0.11	b : 0.09	g : 0.09	d : 0.07	i : 0.07	e : 0.07	" : 0.05	f : 0.05	= : 0.03	# : 0.01	h : 0.01	a : 0.01	
c : 0.14	! : 0.12	b : 0.11	g : 0.09	e : 0.09	d : 0.07	" : 0.07	i : 0.05	[ : 0.05	f : 0.05	# : 0.03	a : 0.03	= : 0.01	h : 0.01	
c : 0.18	[ : 0.14	" : 0.11	! : 0.09	# : 0.09	e : 0.09	g : 0.07	b : 0.05	f : 0.05	d : 0.05	i : 0.01	h : 0.01	
c : 0.22	b : 0.12	" : 0.09	# : 0.09	e : 0.09	g : 0.07	f : 0.07	a : 0.05	[ : 0.05	d : 0.05	! : 0.03	h : 0.01	
c : 0.18	b : 0.12	! : 0.11	d : 0.11	# : 0.09	e : 0.09	" : 0.09	[ : 0.07	g : 0.05	f : 0.03	h : 0.01	
[ : 0.20	d : 0.18	c : 0.11	e : 0.11	! : 0.11	# : 0.07	g : 0.05	b : 0.03	" : 0.03	f : 0.03	a : 0.01	h : 0.01	
c : 0.42	d : 0.24	e : 0.05	a : 0.05	[ : 0.05	" : 0.03	f : 0.03	g : 0.01	# : 0.01	b : 0.01	r : 0.01	! : 0.01	
c : 0.44	d : 0.24	[ : 0.07	e : 0.05	b : 0.03	f : 0.03	g : 0.01	# : 0.01	r : 0.01	a : 0.01	" : 0.01	! : 0.01	
c : 0.44	d : 0.18	o : 0.12	b : 0.07	e : 0.03	a : 0.03	f : 0.03	r : 0.01	" : 0.01	! : 0.01	
o : 0.55	c : 0.14	d : 0.09	a : 0.05	b : 0.03	m : 0.03	r : 0.01	e : 0.01	[ : 0.01	l : 0.01	
o : 0.64	c : 0.09	n : 0.09	l : 0.05	m : 0.03	b : 0.01	d : 0.01	r : 0.01	a : 0.01	
o : 0.66	l : 0.09	n : 0.09	c : 0.05	m : 0.05	b : 0.01	r : 0.01	
o : 0.66	l : 0.12	n : 0.09	m : 0.07	r : 0.01	c : 0.01	
o : 0.66	l : 0.09	c : 0.09	n : 0.09	m : 0.03	r : 0.01	
o : 0.53	c : 0.14	n : 0.09	d : 0.07	l : 0.05	m : 0.03	g : 0.01	r : 0.01	a : 0.01	
c : 0.49	d : 0.18	o : 0.11	a : 0.05	b : 0.03	f : 0.03	g : 0.01	m : 0.01	e : 0.01	] : 0.01	
c : 0.42	d : 0.22	b : 0.07	e : 0.05	] : 0.05	3 : 0.05	f : 0.03	a : 0.03	g : 0.01	o : 0.01	
c : 0.37	d : 0.22	a : 0.09	3 : 0.07	e : 0.05	2 : 0.05	b : 0.03	f : 0.03	g : 0.01	] : 0.01	4 : 0.01	
] : 0.35	d : 0.14	2 : 0.14	3 : 0.12	e : 0.07	4 : 0.07	f : 0.03	g : 0.01	c : 0.01	
b : 0.20	e : 0.12	d : 0.11	4 : 0.11	c : 0.09	2 : 0.09	3 : 0.07	g : 0.05	] : 0.05	a : 0.03	f : 0.03	
b : 0.22	c : 0.20	4 : 0.14	e : 0.12	d : 0.09	g : 0.05	3 : 0.05	] : 0.03	f : 0.03	a : 0.01	
c : 0.22	] : 0.20	4 : 0.14	d : 0.11	e : 0.09	b : 0.07	g : 0.05	3 : 0.03	f : 0.03	2 : 0.01	
c : 0.20	d : 0.16	e : 0.11	4 : 0.09	b : 0.07	] : 0.05	2 : 0.05	g : 0.05	f : 0.05	a : 0.03	3 : 0.03	i : 0.03	h : 0.01	
2 : 0.22	c : 0.12	d : 0.11	] : 0.09	e : 0.09	3 : 0.05	4 : 0.05	g : 0.05	f : 0.05	i : 0.03	= : 0.03	b : 0.03	h : 0.01	
2 : 0.20	c : 0.12	g : 0.11	e : 0.09	] : 0.09	d : 0.09	i : 0.07	f : 0.05	a : 0.03	= : 0.03	4 : 0.01	3 : 0.01	h : 0.01	b : 0.01	
g : 0.14	c : 0.12	b : 0.09	e : 0.09	d : 0.09	i : 0.07	f : 0.07	2 : 0.05	] : 0.05	= : 0.05	a : 0.05	3 : 0.03	h : 0.01	4 : 0.01	
g : 0.12	] : 0.11	c : 0.11	e : 0.11	b : 0.09	i : 0.09	f : 0.09	2 : 0.07	= : 0.05	d : 0.05	4 : 0.03	h : 0.01	3 : 0.01	
e : 0.14	g : 0.12	c : 0.11	] : 0.09	i : 0.09	d : 0.07	4 : 0.05	2 : 0.05	= : 0.05	f : 0.05	3 : 0.03	b : 0.03	a : 0.01	h : 0.01	[ : 0.01	
e : 0.16	d : 0.12	g : 0.11	i : 0.09	c : 0.07	= : 0.07	f : 0.07	4 : 0.05	3 : 0.05	b : 0.05	a : 0.03	] : 0.03	2 : 0.01	h : 0.01	
d : 0.12	e : 0.12	g : 0.11	i : 0.09	f : 0.09	c : 0.07	= : 0.07	3 : 0.07	] : 0.05	4 : 0.03	2 : 0.03	h : 0.03	b : 0.03	: : 0.01	
e : 0.14	d : 0.12	g : 0.11	i : 0.09	f : 0.09	c : 0.07	= : 0.07	] : 0.05	2 : 0.05	3 : 0.05	4 : 0.03	b : 0.03	h : 0.01	C : 0.01	
e : 0.16	d : 0.12	f : 0.09	c : 0.09	g : 0.07	= : 0.07	] : 0.05	i : 0.05	b : 0.05	: : 0.03	2 : 0.03	h : 0.03	B : 0.01	4 : 0.01	3 : 0.01	C : 0.01	7 : 0.01	

#score	756.5248151992462
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF322GPD_SF3B1_transcript_m1_run1.txt

#BEAR
hh"""gggggggeeeeeqqqqqqqqeeeee>>>>>>>>>	chr17:41464595-41464859(-)$1	264	109	148	15.4093
gg[ccc[dddd!!eeeeepppppppeeeee22dddd22c	chr22:43011211-43011418(+)$1	207	133	172	16.9287
""bb!!ccc[gggggggqqqqqqqqgggggggccc]bb6	chr6:43746055-43746300(+)$1	245	92	131	14.2218
ccc!!============nnnnn============333cc	chr8:23428611-23428843(+)$1	232	144	183	12.7730
ffffff!!gggggggbbqqqqqqqqbb22ggggggg]ff	chr11:62609093-62609309(-)$1	216	0	39	16.7394
eeee[gggggggbb[cccooooooccc]bb]ggggggg2	chr19:893459-893690(+)$1	231	175	214	11.5928
cc!!==========[bbqqqqqqqqbb]==========c	chr6:43745868-43746083(+)$1	215	101	140	20.4486
ddggggggg!!ffffffooooooffffff333ggggggg	chr2:97559938-97560192(-)$1	254	161	200	12.5666
:::::iiiiiiiii[bbqqqqqqqqbb]iiiiiiiiigg	chr6:43745909-43746132(+)$1	223	60	99	13.8472
gggggg!!gggggggbbqqqqqqqqbb22ggggggg]gg	chr11:62609109-62609352(-)$1	243	43	82	18.0012
gg[ccc[dddd!!eeeeepppppppeeeee22dddd22c	chr22:43011221-43011459(+)$1	238	123	162	16.9287
ddggggggg!!ffffffooooooffffff333ggggggg	chr2:97559869-97560127(-)$1	258	96	135	12.5666
gg[ccc[dddd!!eeeeepppppppeeeee22dddd22c	chr22:43011194-43011406(+)$1	212	150	189	16.9287
gg[ccc[dddd!!eeeeepppppppeeeee22dddd22c	chr22:43011259-43011464(+)$1	205	85	124	16.9287
cc!!==========[bbqqqqqqqqbb]==========c	chr6:43745833-43746068(+)$1	235	136	175	20.4486
cc!!==========[bbqqqqqqqqbb]==========c	chr6:43745772-43746033(+)$1	261	197	236	20.4486
gg[ccc[dddd!!eeeeepppppppeeeee22dddd22c	chr22:43011206-43011408(+)$1	202	138	177	16.9287
fffff333ddddcccbbqqqqqqqqbb]cccddddoooo	chr8:23425658-23425967(+)$1	309	198	237	13.5350

#otherMatches

#Seq PSSM
guaucuguucuuaucaguuuaauaucugauacguccucu	chr17:41464595-41464859(-)$1	264	109	148	15.4093
GCCCUCAAGGUGACCCGCCUACUUUGCGGGAUGCCUGGG	chr22:43011211-43011418(+)$1	207	133	172	16.9287
AUGGCUGGCUGGGUCACUAACCUCUGUGAUCUGCUUCCU	chr6:43746055-43746300(+)$1	245	92	131	14.2218
UGGCUUGGCUUCAUUCCGACCUGGGGUGGGGCCACAUCC	chr8:23428611-23428843(+)$1	232	144	183	12.7730
AGGCCGCCGAGGCGACCGAAGUAAAGGUaucgcuucucg	chr11:62609093-62609309(-)$1	216	0	39	16.7394
uugcccaggcuggaaugcaauggcgcgaucuuagcuugu	chr19:893459-893690(+)$1	231	175	214	11.5928
GUCUUGGCCUCAAGUGGAACAAGGGCUCCUUGAGGCCAG	chr6:43745868-43746083(+)$1	215	101	140	20.4486
GUGGGGGAGCUGGGUAUGUUUGGGUACCCCUCCUCUccu	chr2:97559938-97560192(-)$1	254	161	200	12.5666
GUCUUGGCCUCAAGUGGAACAAGGGCUCCUUGAGGCCAG	chr6:43745909-43746132(+)$1	223	60	99	13.8472
AGGCCGCCGAGGCGACCGAAGUAAAGGUaucgcuucucg	chr11:62609109-62609352(-)$1	243	43	82	18.0012
GCCCUCAAGGUGACCCGCCUACUUUGCGGGAUGCCUGGG	chr22:43011221-43011459(+)$1	238	123	162	16.9287
GUGGGGGAGCUGGGUAUGUUUGGGUACCCCUCCUCUccu	chr2:97559869-97560127(-)$1	258	96	135	12.5666
GCCCUCAAGGUGACCCGCCUACUUUGCGGGAUGCCUGGG	chr22:43011194-43011406(+)$1	212	150	189	16.9287
GCCCUCAAGGUGACCCGCCUACUUUGCGGGAUGCCUGGG	chr22:43011259-43011464(+)$1	205	85	124	16.9287
GUCUUGGCCUCAAGUGGAACAAGGGCUCCUUGAGGCCAG	chr6:43745833-43746068(+)$1	235	136	175	20.4486
GUCUUGGCCUCAAGUGGAACAAGGGCUCCUUGAGGCCAG	chr6:43745772-43746033(+)$1	261	197	236	20.4486
GCCCUCAAGGUGACCCGCCUACUUUGCGGGAUGCCUGGG	chr22:43011206-43011408(+)$1	202	138	177	16.9287
CCUGCUCCACGAUGCGGUAAUGAAUCCAGCAGAAGGUAA	chr8:23425658-23425967(+)$1	309	198	237	13.5350

#DB
((...((((((((((((........))))).........	chr17:41464595-41464859(-)$1	1	109	148	15.4093
((.(((.((((..(((((.......)))))..))))..)	chr22:43011211-43011418(+)$1	1	133	172	16.9287
..((..(((.(((((((........)))))))))).)).	chr6:43746055-43746300(+)$1	1	92	131	14.2218
(((..((((((((((((.....))))))))))))...))	chr8:23428611-23428843(+)$1	1	144	183	12.7730
((((((..(((((((((........))..))))))).))	chr11:62609093-62609309(-)$1	1	0	39	16.7394
((((.(((((((((.(((......))).)).))))))).	chr19:893459-893690(+)$1	1	175	214	11.5928
((..((((((((((.((........)).)))))))))))	chr6:43745868-43746083(+)$1	1	101	140	20.4486
(((((((((..((((((......))))))...)))))))	chr2:97559938-97560192(-)$1	1	161	200	12.5666
.....(((((((((.((........)).)))))))))((	chr6:43745909-43746132(+)$1	1	60	99	13.8472
((((((..(((((((((........))..))))))).))	chr11:62609109-62609352(-)$1	1	43	82	18.0012
((.(((.((((..(((((.......)))))..))))..)	chr22:43011221-43011459(+)$1	1	123	162	16.9287
(((((((((..((((((......))))))...)))))))	chr2:97559869-97560127(-)$1	1	96	135	12.5666
((.(((.((((..(((((.......)))))..))))..)	chr22:43011194-43011406(+)$1	1	150	189	16.9287
((.(((.((((..(((((.......)))))..))))..)	chr22:43011259-43011464(+)$1	1	85	124	16.9287
((..((((((((((.((........)).)))))))))))	chr6:43745833-43746068(+)$1	1	136	175	20.4486
((..((((((((((.((........)).)))))))))))	chr6:43745772-43746033(+)$1	1	197	236	20.4486
((.(((.((((..(((((.......)))))..))))..)	chr22:43011206-43011408(+)$1	1	138	177	16.9287
)))))...))))(((((........)).)))((((....	chr8:23425658-23425967(+)$1	1	198	237	13.5350

#PSSM
g : 0.33	c : 0.22	f : 0.11	d : 0.11	h : 0.05	" : 0.05	e : 0.05	: : 0.05	
g : 0.33	c : 0.22	f : 0.11	d : 0.11	h : 0.05	" : 0.05	e : 0.05	: : 0.05	
[ : 0.27	! : 0.16	g : 0.16	f : 0.11	" : 0.05	b : 0.05	c : 0.05	e : 0.05	: : 0.05	
c : 0.27	! : 0.22	g : 0.16	f : 0.11	" : 0.05	b : 0.05	e : 0.05	: : 0.05	
c : 0.27	= : 0.16	g : 0.16	! : 0.11	f : 0.11	" : 0.05	[ : 0.05	: : 0.05	
g : 0.27	c : 0.27	= : 0.22	! : 0.05	f : 0.05	i : 0.05	3 : 0.05	
[ : 0.27	g : 0.22	= : 0.22	! : 0.11	c : 0.05	i : 0.05	3 : 0.05	
d : 0.27	g : 0.22	= : 0.22	! : 0.11	c : 0.05	i : 0.05	3 : 0.05	
g : 0.33	d : 0.33	= : 0.22	c : 0.05	i : 0.05	
d : 0.33	g : 0.22	= : 0.22	! : 0.11	[ : 0.05	i : 0.05	
d : 0.33	g : 0.27	= : 0.22	! : 0.11	i : 0.05	
g : 0.27	! : 0.27	= : 0.22	f : 0.11	i : 0.05	d : 0.05	
! : 0.27	= : 0.22	g : 0.16	f : 0.11	e : 0.05	b : 0.05	i : 0.05	c : 0.05	
e : 0.33	= : 0.22	g : 0.16	f : 0.11	b : 0.05	i : 0.05	c : 0.05	
e : 0.33	[ : 0.27	g : 0.16	f : 0.11	= : 0.05	c : 0.05	
b : 0.38	e : 0.33	f : 0.11	g : 0.05	= : 0.05	c : 0.05	
b : 0.38	e : 0.33	f : 0.11	g : 0.05	= : 0.05	c : 0.05	
q : 0.50	e : 0.27	o : 0.11	n : 0.05	c : 0.05	
q : 0.50	p : 0.27	o : 0.16	n : 0.05	
q : 0.50	p : 0.27	o : 0.16	n : 0.05	
q : 0.50	p : 0.27	o : 0.16	n : 0.05	
q : 0.50	p : 0.27	o : 0.16	n : 0.05	
q : 0.50	p : 0.27	o : 0.16	= : 0.05	
q : 0.50	p : 0.27	f : 0.11	= : 0.05	o : 0.05	
q : 0.50	p : 0.27	f : 0.11	= : 0.05	c : 0.05	
b : 0.38	e : 0.33	f : 0.11	g : 0.05	= : 0.05	c : 0.05	
b : 0.38	e : 0.33	f : 0.11	g : 0.05	= : 0.05	c : 0.05	
e : 0.33	] : 0.33	2 : 0.11	f : 0.11	g : 0.05	= : 0.05	
e : 0.33	= : 0.22	2 : 0.11	f : 0.11	g : 0.05	b : 0.05	i : 0.05	c : 0.05	
e : 0.33	= : 0.22	g : 0.16	3 : 0.11	b : 0.05	i : 0.05	c : 0.05	
2 : 0.27	= : 0.22	g : 0.16	3 : 0.11	> : 0.05	] : 0.05	i : 0.05	c : 0.05	
2 : 0.27	g : 0.22	= : 0.22	3 : 0.11	> : 0.05	i : 0.05	d : 0.05	
d : 0.33	g : 0.27	= : 0.22	> : 0.05	c : 0.05	i : 0.05	
d : 0.33	g : 0.27	= : 0.22	> : 0.05	c : 0.05	i : 0.05	
d : 0.33	g : 0.27	= : 0.16	> : 0.05	c : 0.05	3 : 0.05	i : 0.05	
d : 0.27	g : 0.27	= : 0.16	> : 0.05	] : 0.05	3 : 0.05	i : 0.05	o : 0.05	
2 : 0.27	g : 0.16	= : 0.16	] : 0.11	> : 0.05	b : 0.05	3 : 0.05	i : 0.05	o : 0.05	
2 : 0.27	g : 0.27	= : 0.16	> : 0.05	b : 0.05	c : 0.05	f : 0.05	o : 0.05	
c : 0.50	g : 0.22	> : 0.05	6 : 0.05	f : 0.05	2 : 0.05	o : 0.05	

#score	287.242958399961
#seq	18
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_UTR_m3_run2.txt

#BEAR
ff[bbpppppppbbf	chr21:35275677-35275971(-)$1	294	12	27	12.1334
fffffpppppppfff	chr8:101715365-101715581(-)$1	216	154	169	12.8016
!!cccpppppppccc	chr7:100400355-100400661(-)$1	306	206	221	13.6714
cc[bbpppppppbb]	chr2:65496331-65496623(+)$1	292	128	143	12.0854
:ddddpppppppddd	chr2:217069810-217070073(+)$1	263	201	216	12.8706
""cccpppppppccc	chr8:145140916-145141167(+)$1	251	99	114	13.4862
:ddddpppppppddd	chr13:27830334-27830571(+)$1	237	42	57	12.8706
!ddddpppppppddd	chr17:47490503-47490754(-)$1	251	12	27	13.8789
[ddddpppppppddd	chr17:49232911-49233123(+)$1	212	118	133	13.8144
"ddddpppppppddd	chr11:18428830-18429078(+)$1	248	82	97	13.8224
cccccpppppppccc	chr17:41154673-41154900(+)$1	227	208	223	13.3636
eee[apppppppa]e	chr3:128889103-128889351(-)$1	248	134	149	13.0967
gggggpppppppggg	chr19:36139163-36139405(+)$1	242	155	170	13.1370
=====ppppppp===	chr19:11664184-11664525(-)$1	341	236	251	13.1986
ff[bbpppppppbbf	chr3:23959242-23959450(+)$1	208	31	46	12.1334
Bddddpppppppddd	chr19:8381278-8381553(-)$1	275	188	203	12.8563
!!cccpppppppccc	chr13:27830472-27830693(+)$1	221	8	23	13.6714
eeeeepppppppeee	chr9:91931356-91931631(+)$1	275	98	113	13.7132
!ddddpppppppddd	chr19:11172478-11172793(+)$1	315	249	264	13.8789
fffffpppppppfff	chr21:40551760-40552013(-)$1	253	28	43	12.8016
eeeeepppppppeee	chr20:2451232-2451532(-)$1	300	94	109	13.7132
gggggpppppppggg	chr19:19636890-19637167(+)$1	277	195	210	13.1370
eeeeepppppppeee	chr2:55200068-55200349(-)$1	281	166	181	13.7132
d[cccpppppppccc	chr10:70101670-70101954(+)$1	284	76	91	13.3804
eeeeepppppppeee	chr15:78841269-78841534(+)$1	265	181	196	13.7132
eecccpppppppccc	chr11:14526505-14526763(-)$1	258	219	234	13.5800
fffffpppppppfff	chr16:31201327-31201562(+)$1	235	3	18	12.8016
!ddddpppppppddd	chr11:404731-404982(+)$1	251	73	88	13.8789
d[cccpppppppccc	chr7:99055723-99055958(-)$1	235	140	155	13.3804
gggggpppppppggg	chr1:26646797-26647099(+)$1	302	64	79	13.1370
fffffpppppppfff	chr1:110943853-110944117(-)$1	264	201	216	12.8016
dd[bbpppppppbb]	chr21:40547298-40547602(-)$1	304	244	259	12.0973
fffffpppppppfff	chr7:127231549-127231838(+)$1	289	193	208	12.8016
""cccpppppppccc	chr6:33172042-33172295(+)$1	253	104	119	13.4862
eeeeepppppppeee	chr5:159855563-159855823(+)$1	260	74	89	13.7132
!!cccpppppppccc	chr11:5274337-5274596(-)$1	259	94	109	13.6714
=====ppppppp===	chr17:56167543-56167797(+)$1	254	201	216	13.1986
eeeeepppppppeee	chr19:42364755-42365013(+)$1	258	13	28	13.7132
:ddddpppppppddd	chr6:41902884-41903132(-)$1	248	49	64	12.8706
!ddddpppppppddd	chr11:404638-404931(+)$1	293	166	181	13.8789
eddddpppppppddd	chr2:61704998-61705254(-)$1	256	141	156	13.7378
eeeeepppppppeee	chr11:62340096-62340315(-)$1	219	148	163	13.7132
cc[bbpppppppbbc	chr19:46029979-46030259(+)$1	280	138	153	12.2286
eeeeepppppppeee	chr19:42364744-42364955(+)$1	211	24	39	13.7132
fffffpppppppfff	chr19:50363432-50363693(+)$1	261	232	247	12.8016
"ddddpppppppddd	chr7:155100324-155100566(+)$1	242	74	89	13.8224
eeeeepppppppeee	chr11:59573607-59573933(-)$1	326	274	289	13.7132
fffffpppppppfff	chr22:30165563-30165860(+)$1	297	263	278	12.8016
b[cccpppppppccc	chr8:11701760-11701999(-)$1	239	119	134	13.2903
%ddddpppppppddd	chr5:110834582-110834844(-)$1	262	142	157	13.2403
eeeeepppppppeee	chr4:667899-668161(-)$1	262	40	55	13.7132
(ddddpppppppddd	chr20:35869752-35870008(+)$1	256	58	73	13.1681
eeeeepppppppeee	chr7:148700585-148700858(-)$1	273	255	270	13.7132
d[cccpppppppccc	chr1:155707940-155708235(+)$1	295	117	132	13.3804
:ddddpppppppddd	chr15:52843290-52843555(-)$1	265	71	86	12.8706
b[cccpppppppccc	chr12:57628225-57628498(+)$1	273	154	169	13.2903
eeeeepppppppeee	chr2:73479812-73480153(+)$1	341	278	293	13.7132
"ddddpppppppddd	chr11:18428720-18429002(+)$1	282	192	207	13.8224
eeeeepppppppeee	chr19:50183643-50183888(+)$1	245	156	171	13.7132
=[cccpppppppccc	chr18:32915113-32915395(-)$1	282	253	268	13.5416
fffffpppppppfff	chr8:101715274-101715485(-)$1	211	58	73	12.8016
"ddddpppppppddd	chr14:50050223-50050484(-)$1	261	179	194	13.8224
eeeeepppppppeee	chr3:128888951-128889204(-)$1	253	21	36	13.7132
gggggpppppppggg	chrX:47518413-47518630(-)$1	217	109	124	13.1370
eeeeepppppppeee	chr14:21679463-21679714(-)$1	251	76	91	13.7132
!ddddpppppppddd	chr12:6679306-6679562(-)$1	256	146	161	13.8789
eeeeepppppppeee	chr16:31202300-31202522(+)$1	222	10	25	13.7132
%ddddpppppppddd	chrX:49370495-49370791(+)$1	296	99	114	13.2403
fffffpppppppfff	chr8:101715381-101715620(-)$1	239	193	208	12.8016
:ddddpppppppddd	chr17:73034879-73035153(-)$1	274	212	227	12.8706

#otherMatches

#Seq PSSM
CUUACUUCUUUUGUA	chr21:35275677-35275971(-)$1	294	12	27	12.1334
UAGCAAACAUAAUGC	chr8:101715365-101715581(-)$1	216	154	169	12.8016
AUGGCCUCCUUUGCC	chr7:100400355-100400661(-)$1	306	206	221	13.6714
AUGGGUGGUCUUCUG	chr2:65496331-65496623(+)$1	292	128	143	12.0854
GGGGAGCCAAAAUCU	chr2:217069810-217070073(+)$1	263	201	216	12.8706
CUUCUGGAAGUGAGA	chr8:145140916-145141167(+)$1	251	99	114	13.4862
AGAGCCGAGAUAGCU	chr13:27830334-27830571(+)$1	237	42	57	12.8706
AGGUUGAAAAGUGAC	chr17:47490503-47490754(-)$1	251	12	27	13.8789
GCGUACCUUCAUUGC	chr17:49232911-49233123(+)$1	212	118	133	13.8144
UCUGUGAUUAAAGCA	chr11:18428830-18429078(+)$1	248	82	97	13.8224
CUUCUAGAUACAAGA	chr17:41154673-41154900(+)$1	227	208	223	13.3636
UUGGCAGAUAGAGGC	chr3:128889103-128889351(-)$1	248	134	149	13.0967
GUUCUGUAACCUGGG	chr19:36139163-36139405(+)$1	242	155	170	13.1370
UUCCUGGGCCUGAGG	chr19:11664184-11664525(-)$1	341	236	251	13.1986
UGGACGGAUACAGUC	chr3:23959242-23959450(+)$1	208	31	46	12.1334
CGCUGCUCACCACAG	chr19:8381278-8381553(-)$1	275	188	203	12.8563
UGGUGUAUAUUUCAU	chr13:27830472-27830693(+)$1	221	8	23	13.6714
GCUGUAUUCUUCACA	chr9:91931356-91931631(+)$1	275	98	113	13.7132
AUUCCGAAUUGGGGA	chr19:11172478-11172793(+)$1	315	249	264	13.8789
GUUACAUAUAUGGUG	chr21:40551760-40552013(-)$1	253	28	43	12.8016
GCUGCAUUUCCGGUA	chr20:2451232-2451532(-)$1	300	94	109	13.7132
GCGUUGUCUGAAAGU	chr19:19636890-19637167(+)$1	277	195	210	13.1370
AGAUCGUUGUUAGAU	chr2:55200068-55200349(-)$1	281	166	181	13.7132
GAGGCAGUGGAGGUU	chr10:70101670-70101954(+)$1	284	76	91	13.3804
GUAACGAUGAUGGUU	chr15:78841269-78841534(+)$1	265	181	196	13.7132
AGGGUCUGUAUAAUC	chr11:14526505-14526763(-)$1	258	219	234	13.5800
AAGUCUGUUGAUGAU	chr16:31201327-31201562(+)$1	235	3	18	12.8016
AUGGGGUGGUGACCC	chr11:404731-404982(+)$1	251	73	88	13.8789
ACGUGUGCUGAUUGC	chr7:99055723-99055958(-)$1	235	140	155	13.3804
CCUCCAUCUUUGGGA	chr1:26646797-26647099(+)$1	302	64	79	13.1370
UAUAGAAUUUUGCUG	chr1:110943853-110944117(-)$1	264	201	216	12.8016
GUGGUAUUAUUCACA	chr21:40547298-40547602(-)$1	304	244	259	12.0973
CUGUGGUUUGUACAC	chr7:127231549-127231838(+)$1	289	193	208	12.8016
UAUCACUGUGUUUGA	chr6:33172042-33172295(+)$1	253	104	119	13.4862
UCGACCCUGGAUGUU	chr5:159855563-159855823(+)$1	260	74	89	13.7132
ACUGCCCAUGAUGCA	chr11:5274337-5274596(-)$1	259	94	109	13.6714
GUUUUGAAAAUAAAG	chr17:56167543-56167797(+)$1	254	201	216	13.1986
GGAUUGGGGUGGGGU	chr19:42364755-42365013(+)$1	258	13	28	13.7132
CCUGUGUGAUUGACA	chr6:41902884-41903132(-)$1	248	49	64	12.8706
AUGGGGUGGUGACCC	chr11:404638-404931(+)$1	293	166	181	13.8789
UUAAGAACACUACUU	chr2:61704998-61705254(-)$1	256	141	156	13.7378
CGCUGCUCAGUACAG	chr11:62340096-62340315(-)$1	219	148	163	13.7132
UUACCCCUUGGAGGA	chr19:46029979-46030259(+)$1	280	138	153	12.2286
GGAUUGGGGUGGGGU	chr19:42364744-42364955(+)$1	211	24	39	13.7132
AGGGCGACCUUGGCC	chr19:50363432-50363693(+)$1	261	232	247	12.8016
UAAUAGGAAUAAUAU	chr7:155100324-155100566(+)$1	242	74	89	13.8224
AAGAAAACUGuauuu	chr11:59573607-59573933(-)$1	326	274	289	13.7132
CUGUUGGCAAGAAAC	chr22:30165563-30165860(+)$1	297	263	278	12.8016
CCUGUCAAGUUAACA	chr8:11701760-11701999(-)$1	239	119	134	13.2903
UGGGUAAAGUGAGCC	chr5:110834582-110834844(-)$1	262	142	157	13.2403
GCCUUUGCCUCCAAG	chr4:667899-668161(-)$1	262	40	55	13.7132
ACUUUAUUUAAAAAA	chr20:35869752-35870008(+)$1	256	58	73	13.1681
gcagauaauucuucu	chr7:148700585-148700858(-)$1	273	255	270	13.7132
GACAGUGGACAUCUG	chr1:155707940-155708235(+)$1	295	117	132	13.3804
CCUUUUGUUGUUGAA	chr15:52843290-52843555(-)$1	265	71	86	12.8706
GUCAUGAUCACAGUG	chr12:57628225-57628498(+)$1	273	154	169	13.2903
UCUCUUCUUACUGGA	chr2:73479812-73480153(+)$1	341	278	293	13.7132
UCUGUGAUUAAAGCA	chr11:18428720-18429002(+)$1	282	192	207	13.8224
CAAAGAUUACUACUU	chr19:50183643-50183888(+)$1	245	156	171	13.7132
AGGUUUUCAGGUGGC	chr18:32915113-32915395(-)$1	282	253	268	13.5416
UAGCAAACAUAAUGC	chr8:101715274-101715485(-)$1	211	58	73	12.8016
UUGAAAAAACCCUUC	chr14:50050223-50050484(-)$1	261	179	194	13.8224
UUUACUUGCCGUGUA	chr3:128888951-128889204(-)$1	253	21	36	13.7132
GGCCUGAGGUAAAGG	chrX:47518413-47518630(-)$1	217	109	124	13.1370
GGGGUGCAGAUGACU	chr14:21679463-21679714(-)$1	251	76	91	13.7132
ACAGCUACCUCUGUU	chr12:6679306-6679562(-)$1	256	146	161	13.8789
GUGGCAGAGGAGGCU	chr16:31202300-31202522(+)$1	222	10	25	13.7132
GGUGAAGGGCAAUCA	chrX:49370495-49370791(+)$1	296	99	114	13.2403
UAGCAAACAUAAUGC	chr8:101715381-101715620(-)$1	239	193	208	12.8016
UUCUCUGUGGUUGAG	chr17:73034879-73035153(-)$1	274	212	227	12.8706

#DB
((.((.......)))	chr21:35275677-35275971(-)$1	1	12	27	12.1334
(((((.......)))	chr8:101715365-101715581(-)$1	1	154	169	12.8016
..(((.......)))	chr7:100400355-100400661(-)$1	1	206	221	13.6714
((.((.......)).	chr2:65496331-65496623(+)$1	1	128	143	12.0854
.((((.......)))	chr2:217069810-217070073(+)$1	1	201	216	12.8706
..(((.......)))	chr8:145140916-145141167(+)$1	1	99	114	13.4862
.((((.......)))	chr13:27830334-27830571(+)$1	1	42	57	12.8706
.((((.......)))	chr17:47490503-47490754(-)$1	1	12	27	13.8789
.((((.......)))	chr17:49232911-49233123(+)$1	1	118	133	13.8144
.((((.......)))	chr11:18428830-18429078(+)$1	1	82	97	13.8224
(((((.......)))	chr17:41154673-41154900(+)$1	1	208	223	13.3636
(((.(.......).)	chr3:128889103-128889351(-)$1	1	134	149	13.0967
(((((.......)))	chr19:36139163-36139405(+)$1	1	155	170	13.1370
(((((.......)))	chr19:11664184-11664525(-)$1	1	236	251	13.1986
((.((.......)))	chr3:23959242-23959450(+)$1	1	31	46	12.1334
(((((.......)))	chr19:8381278-8381553(-)$1	1	188	203	12.8563
..(((.......)))	chr13:27830472-27830693(+)$1	1	8	23	13.6714
(((((.......)))	chr9:91931356-91931631(+)$1	1	98	113	13.7132
.((((.......)))	chr19:11172478-11172793(+)$1	1	249	264	13.8789
(((((.......)))	chr21:40551760-40552013(-)$1	1	28	43	12.8016
(((((.......)))	chr20:2451232-2451532(-)$1	1	94	109	13.7132
(((((.......)))	chr19:19636890-19637167(+)$1	1	195	210	13.1370
(((((.......)))	chr2:55200068-55200349(-)$1	1	166	181	13.7132
(.(((.......)))	chr10:70101670-70101954(+)$1	1	76	91	13.3804
(((((.......)))	chr15:78841269-78841534(+)$1	1	181	196	13.7132
(((((.......)))	chr11:14526505-14526763(-)$1	1	219	234	13.5800
(((((.......)))	chr16:31201327-31201562(+)$1	1	3	18	12.8016
.((((.......)))	chr11:404731-404982(+)$1	1	73	88	13.8789
(.(((.......)))	chr7:99055723-99055958(-)$1	1	140	155	13.3804
(((((.......)))	chr1:26646797-26647099(+)$1	1	64	79	13.1370
(((((.......)))	chr1:110943853-110944117(-)$1	1	201	216	12.8016
((.((.......)).	chr21:40547298-40547602(-)$1	1	244	259	12.0973
(((((.......)))	chr7:127231549-127231838(+)$1	1	193	208	12.8016
..(((.......)))	chr6:33172042-33172295(+)$1	1	104	119	13.4862
(((((.......)))	chr5:159855563-159855823(+)$1	1	74	89	13.7132
..(((.......)))	chr11:5274337-5274596(-)$1	1	94	109	13.6714
(((((.......)))	chr17:56167543-56167797(+)$1	1	201	216	13.1986
(((((.......)))	chr19:42364755-42365013(+)$1	1	13	28	13.7132
.((((.......)))	chr6:41902884-41903132(-)$1	1	49	64	12.8706
.((((.......)))	chr11:404638-404931(+)$1	1	166	181	13.8789
(((((.......)))	chr2:61704998-61705254(-)$1	1	141	156	13.7378
(((((.......)))	chr11:62340096-62340315(-)$1	1	148	163	13.7132
((.((.......)))	chr19:46029979-46030259(+)$1	1	138	153	12.2286
(((((.......)))	chr19:42364744-42364955(+)$1	1	24	39	13.7132
(((((.......)))	chr19:50363432-50363693(+)$1	1	232	247	12.8016
.((((.......)))	chr7:155100324-155100566(+)$1	1	74	89	13.8224
(((((.......)))	chr11:59573607-59573933(-)$1	1	274	289	13.7132
(((((.......)))	chr22:30165563-30165860(+)$1	1	263	278	12.8016
(.(((.......)))	chr8:11701760-11701999(-)$1	1	119	134	13.2903
.((((.......)))	chr5:110834582-110834844(-)$1	1	142	157	13.2403
(((((.......)))	chr4:667899-668161(-)$1	1	40	55	13.7132
.((((.......)))	chr20:35869752-35870008(+)$1	1	58	73	13.1681
(((((.......)))	chr7:148700585-148700858(-)$1	1	255	270	13.7132
(.(((.......)))	chr1:155707940-155708235(+)$1	1	117	132	13.3804
.((((.......)))	chr15:52843290-52843555(-)$1	1	71	86	12.8706
(.(((.......)))	chr12:57628225-57628498(+)$1	1	154	169	13.2903
(((((.......)))	chr2:73479812-73480153(+)$1	1	278	293	13.7132
.((((.......)))	chr11:18428720-18429002(+)$1	1	192	207	13.8224
(((((.......)))	chr19:50183643-50183888(+)$1	1	156	171	13.7132
(.(((.......)))	chr18:32915113-32915395(-)$1	1	253	268	13.5416
(((((.......)))	chr8:101715274-101715485(-)$1	1	58	73	12.8016
.((((.......)))	chr14:50050223-50050484(-)$1	1	179	194	13.8224
(((((.......)))	chr3:128888951-128889204(-)$1	1	21	36	13.7132
(((((.......)))	chrX:47518413-47518630(-)$1	1	109	124	13.1370
(((((.......)))	chr14:21679463-21679714(-)$1	1	76	91	13.7132
.((((.......)))	chr12:6679306-6679562(-)$1	1	146	161	13.8789
(((((.......)))	chr16:31202300-31202522(+)$1	1	10	25	13.7132
.((((.......)))	chrX:49370495-49370791(+)$1	1	99	114	13.2403
(((((.......)))	chr8:101715381-101715620(-)$1	1	193	208	12.8016
.((((.......)))	chr17:73034879-73035153(-)$1	1	212	227	12.8706

#PSSM
e : 0.27	f : 0.15	! : 0.11	" : 0.08	: : 0.07	g : 0.05	d : 0.05	c : 0.04	= : 0.04	b : 0.02	% : 0.02	[ : 0.01	B : 0.01	( : 0.01	
d : 0.30	e : 0.25	f : 0.15	[ : 0.08	g : 0.05	! : 0.04	c : 0.04	" : 0.02	= : 0.02	
d : 0.28	e : 0.24	c : 0.18	f : 0.12	[ : 0.07	g : 0.05	= : 0.02	
d : 0.28	e : 0.22	c : 0.18	f : 0.12	b : 0.07	g : 0.05	= : 0.02	[ : 0.01	
d : 0.28	e : 0.22	c : 0.18	f : 0.12	b : 0.07	g : 0.05	= : 0.02	a : 0.01	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
d : 0.28	e : 0.22	c : 0.18	f : 0.12	b : 0.07	g : 0.05	= : 0.02	a : 0.01	
d : 0.28	e : 0.22	c : 0.18	f : 0.12	b : 0.07	g : 0.05	= : 0.02	] : 0.01	
d : 0.28	e : 0.24	c : 0.20	f : 0.15	g : 0.05	] : 0.02	= : 0.02	

#score	931.6364372930148
#seq	70
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_CDS_m3_run2.txt

#BEAR
fffff[aqqqqqqqqa]ff	chr17:46051772-46052129(+)$1	357	126	145	13.3570
dddd[bbqqqqqqqqbb]d	chr11:290680-290953(+)$1	273	76	95	15.1656
ddddcccqqqqqqqqccc]	chr1:78429210-78429509(-)$1	299	103	122	14.7324
a[eeeeeqqqqqqqqeeee	chr6:86324670-86324932(-)$1	262	193	212	13.2687
bb!!cccqqqqqqqqccc]	chr6:26285504-26285803(-)$1	299	79	98	14.5740
dddd[bbqqqqqqqqbb]d	chr9:19379314-19379566(-)$1	252	193	212	15.1656
gggggggqqqqqqqqgggg	chr18:43669718-43670001(-)$1	283	76	95	14.6300
ee[ddddqqqqqqqqdddd	chr16:31196353-31196604(+)$1	251	184	203	13.7606
bb!!cccqqqqqqqqccc]	chr6:26285603-26285848(-)$1	245	124	143	14.5740
gggggggqqqqqqqqgggg	chr7:26237347-26237593(-)$1	246	58	77	14.6300
=======qqqqqqqq====	chr17:56082236-56082587(-)$1	351	301	320	15.1296
iiiiiiiqqqqqqqqiiii	chr8:23412155-23412438(+)$1	283	170	189	14.8539
hhhddddqqqqqqqqdddd	chr17:76116991-76117214(-)$1	223	179	198	13.4265
dddd[bbqqqqqqqqbb]d	chr9:19379271-19379514(-)$1	243	141	160	15.1656
gggggggqqqqqqqqgggg	chr2:178081324-178081571(+)$1	247	221	240	14.6300
ff"""bbqqqqqqqqbb55	chrX:152957477-152957728(+)$1	251	203	222	13.0333
dddd[bbqqqqqqqqbbdd	chr8:110346553-110346808(+)$1	255	0	19	14.9423

#otherMatches

#Seq PSSM
AGUCUGUGAGUGGGAAGAG	chr17:46051772-46052129(+)$1	357	126	145	13.3570
CCCCCAGACCUGACCCUUG	chr11:290680-290953(+)$1	273	76	95	15.1656
CUAUAGGCUGGUAAUCCUG	chr1:78429210-78429509(-)$1	299	103	122	14.7324
GAGGUGCGAGAGGAGGUGC	chr6:86324670-86324932(-)$1	262	193	212	13.2687
UCUGGCCGUGGUAAAGGUG	chr6:26285504-26285803(-)$1	299	79	98	14.5740
AAGUUGCUUCCGAAUGCCA	chr9:19379314-19379566(-)$1	252	193	212	15.1656
UUGUCGUGUUUGGAAAUGA	chr18:43669718-43670001(-)$1	283	76	95	14.6300
GAGUGUGGAGGAUUGCAUG	chr16:31196353-31196604(+)$1	251	184	203	13.7606
UCUGGCCGUGGUAAAGGUG	chr6:26285603-26285848(-)$1	245	124	143	14.5740
AGUUUAACAUAUGGUUUAA	chr7:26237347-26237593(-)$1	246	58	77	14.6300
AUGGUAUGACUCCAAGUGC	chr17:56082236-56082587(-)$1	351	301	320	15.1296
GGGGCCUGGUAGGGAAGGC	chr8:23412155-23412438(+)$1	283	170	189	14.8539
UCCGGGUGUAUCCAAACCU	chr17:76116991-76117214(-)$1	223	179	198	13.4265
AAGUUGCUUCCGAAUGCCA	chr9:19379271-19379514(-)$1	243	141	160	15.1656
AGUUGAAUAUAUUAUUUUA	chr2:178081324-178081571(+)$1	247	221	240	14.6300
AGGUACUGAAAGCCAAGCA	chrX:152957477-152957728(+)$1	251	203	222	13.0333
GAAAUGCGUGUUCUAGCUU	chr8:110346553-110346808(+)$1	255	0	19	14.9423

#DB
(((((.(........).))	chr17:46051772-46052129(+)$1	1	126	145	13.3570
((((.((........)).)	chr11:290680-290953(+)$1	1	76	95	15.1656
(((((((........))).	chr1:78429210-78429509(-)$1	1	103	122	14.7324
(.(((((........))))	chr6:86324670-86324932(-)$1	1	193	212	13.2687
((..(((........))).	chr6:26285504-26285803(-)$1	1	79	98	14.5740
((((.((........)).)	chr9:19379314-19379566(-)$1	1	193	212	15.1656
(((((((........))))	chr18:43669718-43670001(-)$1	1	76	95	14.6300
((.((((........))))	chr16:31196353-31196604(+)$1	1	184	203	13.7606
((..(((........))).	chr6:26285603-26285848(-)$1	1	124	143	14.5740
(((((((........))))	chr7:26237347-26237593(-)$1	1	58	77	14.6300
(((((((........))))	chr17:56082236-56082587(-)$1	1	301	320	15.1296
(((((((........))))	chr8:23412155-23412438(+)$1	1	170	189	14.8539
)))((((........))))	chr17:76116991-76117214(-)$1	1	179	198	13.4265
((((.((........)).)	chr9:19379271-19379514(-)$1	1	141	160	15.1656
(((((((........))))	chr2:178081324-178081571(+)$1	1	221	240	14.6300
((...((........))..	chrX:152957477-152957728(+)$1	1	203	222	13.0333
((((.((........))))	chr8:110346553-110346808(+)$1	1	0	19	14.9423

#PSSM
d : 0.29	g : 0.17	f : 0.11	b : 0.11	a : 0.05	e : 0.05	= : 0.05	i : 0.05	h : 0.05	
d : 0.29	g : 0.17	f : 0.11	b : 0.11	[ : 0.05	e : 0.05	= : 0.05	i : 0.05	h : 0.05	
d : 0.29	g : 0.17	! : 0.11	f : 0.05	e : 0.05	[ : 0.05	= : 0.05	i : 0.05	h : 0.05	" : 0.05	
d : 0.41	g : 0.17	! : 0.11	f : 0.05	e : 0.05	= : 0.05	i : 0.05	" : 0.05	
[ : 0.23	c : 0.17	g : 0.17	d : 0.11	f : 0.05	e : 0.05	= : 0.05	i : 0.05	" : 0.05	
b : 0.29	c : 0.17	g : 0.17	d : 0.11	[ : 0.05	e : 0.05	= : 0.05	i : 0.05	
b : 0.29	c : 0.17	g : 0.17	d : 0.11	a : 0.05	e : 0.05	= : 0.05	i : 0.05	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
b : 0.29	c : 0.17	g : 0.17	d : 0.11	a : 0.05	e : 0.05	= : 0.05	i : 0.05	
b : 0.29	c : 0.17	g : 0.17	d : 0.11	] : 0.05	e : 0.05	= : 0.05	i : 0.05	
] : 0.17	c : 0.17	g : 0.17	d : 0.17	f : 0.05	e : 0.05	= : 0.05	i : 0.05	5 : 0.05	
d : 0.35	] : 0.17	g : 0.17	f : 0.05	e : 0.05	= : 0.05	i : 0.05	5 : 0.05	

#score	245.0397915123177
#seq	17
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_UTR_m1_run1.txt

#BEAR
=======[bbgggggggssssssssssggggggg]bb22=	chr2:232327809-232328119(-)$1	310	45	85	18.7298
============eeeee!!bboooooobb]eeeee:dddd	chr16:2580589-2580901(+)$1	312	120	160	18.6493
eee]a:bb!!ccc[eeeeesssssssssseeeeeccc22b	chr9:117014771-117015008(+)$1	237	148	188	17.0432
a!!==========[ccc[ccclllcccccc==========	chr7:2394448-2394708(+)$1	260	14	54	16.4961
h[eeeee[cccdddd"""cccooooooccc333dddd]cc	chr6:26055915-26056141(-)$1	226	54	94	17.4947
eeee####cccffffff!!bboooooobb22ffffff22c	chr9:116999867-117000095(+)$1	228	72	112	19.6297

#otherMatches

#Seq PSSM
UGAAAUGUCGAGGUGGAGGUGUAAUGAUCUAUUUGUGUCC	chr2:232327809-232328119(-)$1	310	45	85	18.7298
GGAAGGGAACAGCCAGGGAAGAACCACCUGCCUGGGCAGG	chr16:2580589-2580901(+)$1	312	120	160	18.6493
GUCGAUGGUAAGGAGUAAGUCUGCAUCCUCUUGCCCUCUC	chr9:117014771-117015008(+)$1	237	148	188	17.0432
UGGCUGGGCUGUAGCCGUCGCGGCGCGCGGUGCGGCCUGG	chr7:2394448-2394708(+)$1	260	14	54	16.4961
UAAGGCUGUGAAGCCCAAGGCCGCUAAGCCCAAGGUUGUC	chr6:26055915-26056141(-)$1	226	54	94	17.4947
AGGGCAAAGUCGGAGACAAAGGAUCCAUUGGGUUUCCCGG	chr9:116999867-117000095(+)$1	228	72	112	19.6297

#DB
(((((((.(((((((((..........))))))).))..)	chr2:232327809-232328119(-)$1	1	45	85	18.7298
))))))))))))(((((..((......)).))))).((((	chr16:2580589-2580901(+)$1	1	120	160	18.6493
))).).((..(((.(((((..........))))))))..)	chr9:117014771-117015008(+)$1	1	148	188	17.0432
(..((((((((((.(((.(((...))))))))))))))))	chr7:2394448-2394708(+)$1	1	14	54	16.4961
(.(((((.(((((((...(((......)))...)))).))	chr6:26055915-26056141(-)$1	1	54	94	17.4947
((((....(((((((((..((......))..))))))..)	chr9:116999867-117000095(+)$1	1	72	112	19.6297

#PSSM
= : 0.33	e : 0.33	a : 0.16	h : 0.16	
= : 0.33	e : 0.33	! : 0.16	[ : 0.16	
e : 0.50	= : 0.33	! : 0.16	
= : 0.50	e : 0.33	] : 0.16	
= : 0.50	a : 0.16	e : 0.16	# : 0.16	
= : 0.50	: : 0.16	e : 0.16	# : 0.16	
= : 0.50	b : 0.16	e : 0.16	# : 0.16	
[ : 0.33	= : 0.33	b : 0.16	# : 0.16	
= : 0.33	c : 0.33	b : 0.16	! : 0.16	
= : 0.33	c : 0.33	b : 0.16	! : 0.16	
c : 0.50	= : 0.33	g : 0.16	
= : 0.33	g : 0.16	c : 0.16	d : 0.16	f : 0.16	
g : 0.16	e : 0.16	c : 0.16	= : 0.16	d : 0.16	f : 0.16	
[ : 0.33	g : 0.16	e : 0.16	d : 0.16	f : 0.16	
e : 0.33	g : 0.16	c : 0.16	d : 0.16	f : 0.16	
e : 0.33	g : 0.16	c : 0.16	" : 0.16	f : 0.16	
e : 0.33	g : 0.16	c : 0.16	" : 0.16	f : 0.16	
! : 0.33	s : 0.16	e : 0.16	[ : 0.16	" : 0.16	
! : 0.33	c : 0.33	s : 0.16	e : 0.16	
s : 0.33	b : 0.33	c : 0.33	
s : 0.33	b : 0.33	c : 0.33	
o : 0.50	s : 0.33	l : 0.16	
o : 0.50	s : 0.33	l : 0.16	
o : 0.50	s : 0.33	l : 0.16	
o : 0.50	s : 0.33	c : 0.16	
o : 0.50	s : 0.33	c : 0.16	
o : 0.50	s : 0.33	c : 0.16	
b : 0.33	c : 0.33	g : 0.16	s : 0.16	
b : 0.33	c : 0.33	g : 0.16	s : 0.16	
c : 0.33	g : 0.16	] : 0.16	e : 0.16	2 : 0.16	
e : 0.33	g : 0.16	= : 0.16	3 : 0.16	2 : 0.16	
e : 0.33	g : 0.16	= : 0.16	3 : 0.16	f : 0.16	
e : 0.33	g : 0.16	= : 0.16	3 : 0.16	f : 0.16	
e : 0.33	g : 0.16	= : 0.16	d : 0.16	f : 0.16	
] : 0.16	e : 0.16	c : 0.16	= : 0.16	d : 0.16	f : 0.16	
b : 0.16	: : 0.16	c : 0.16	= : 0.16	d : 0.16	f : 0.16	
d : 0.33	b : 0.16	c : 0.16	= : 0.16	f : 0.16	
2 : 0.50	d : 0.16	= : 0.16	] : 0.16	
2 : 0.50	d : 0.16	= : 0.16	c : 0.16	
= : 0.33	c : 0.33	d : 0.16	b : 0.16	

#score	108.04315786593335
#seq	6
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_UTR_m2_run2.txt

#BEAR
:ccc[cccooooooccc]ccc	chrX:123045877-123046139(+)$1	262	150	171	14.1371
:gggggggooooooggggggg	chr13:30779941-30780185(-)$1	244	23	44	12.0032
ff####bboooooobb22fff	chr22:20052395-20052634(+)$1	239	145	166	11.8098
eee!!cccooooooccc333e	chr15:75952772-75953084(+)$1	312	28	49	14.2617
ffff[cccooooooccc333f	chr12:49976481-49976780(+)$1	299	26	47	14.4657
!ccc!!bboooooobb22ccc	chr3:128532334-128532556(+)$1	222	130	151	13.0807
"ccc[cccooooooccc]ccc	chr21:46915659-46915865(+)$1	206	148	169	14.9026
"ccc[cccooooooccc]ccc	chr21:46915635-46915847(+)$1	212	172	193	14.9026
::ccccccooooooccc]ccc	chr14:65233000-65233244(-)$1	244	177	198	12.5297
fffeeeeeooooooeeeee]f	chr8:28906825-28907117(+)$1	292	218	239	10.9364
d[ffffffooooooffffff]	chr17:4619009-4619264(+)$1	255	160	181	11.6018
[ccc!!bboooooobb22ccc	chr4:1019789-1020085(+)$1	296	89	110	13.0169
eee!!cccooooooccc22ee	chr4:763751-764036(-)$1	285	147	168	13.7615
b[bb"""aooooooa333bb]	chr10:18829545-18829811(-)$1	266	73	94	11.8750
bbccccccooooooccc]ccc	chr4:1944037-1944298(+)$1	261	120	141	13.8189
ccc[ddddoooooodddd22c	chr16:4740458-4740730(+)$1	272	33	54	11.6052
fffff!!aooooooa22ffff	chr5:122165412-122165689(+)$1	277	232	253	11.5899
ccc!!cccooooooccc22cc	chr17:3799996-3800322(-)$1	326	251	272	14.7428
ccc[ddddoooooodddd]cc	chr5:38950305-38950618(-)$1	313	259	280	11.9679
cc[eeeeeooooooeeeeecc	chr5:112213509-112213809(-)$1	300	72	93	11.4461
:ccc[cccooooooccc]ccc	chr17:37417404-37417663(-)$1	259	36	57	14.1371
"""eeeeeooooooeeeee]d	chr17:38296551-38296832(+)$1	281	239	260	10.9286
!ccc!!bboooooobb22ccc	chr3:128532285-128532534(+)$1	249	179	200	13.0807
iiiiii[aooooooa333iii	chr3:38183659-38183982(+)$1	323	20	41	13.0672
gggg[cccooooooccc22gg	chr12:57450080-57450367(-)$1	287	88	109	14.4746
eee!!cccooooooccc22ee	chr4:763608-763895(-)$1	287	6	27	13.7615
ffff[cccoooooocccffff	chr15:40845942-40846178(-)$1	236	191	212	13.5874
====[cccooooooccc22==	chr1:36521814-36522129(+)$1	315	33	54	14.5314
ffff[cccooooooccc]fff	chr4:1019470-1019737(+)$1	267	72	93	14.0816
====[cccooooooccc====	chr1:153618152-153618449(+)$1	297	191	212	14.2126
:gggggggooooooggggggg	chr21:46915548-46915806(+)$1	258	236	257	12.0032
:gggggggooooooggggggg	chr2:106510392-106510677(+)$1	285	171	192	12.0032
!!ffffffooooooffffffb	chr19:10488886-10489241(-)$1	355	90	111	11.5834
:ccc[cccoooooocccccc:	chr2:209170044-209170314(+)$1	270	244	265	12.5338
:gggggggooooooggggggg	chr16:23880276-23880568(+)$1	292	156	177	12.0032
eee!!cccooooooccc333e	chr16:4740129-4740374(+)$1	245	114	135	14.2617
hhccccccooooooccc]ccc	chr17:34851655-34851999(-)$1	344	81	102	13.7582
dd!!ddddoooooodddd444	chr12:123998394-123998622(-)$1	228	49	70	11.1467
:ccc[cccooooooccc]ccc	chrX:123045813-123046077(+)$1	264	214	235	14.1371
""ffffffooooooffffff4	chr3:9849201-9849488(+)$1	287	76	97	11.7048
gggggggaooooooa]ggggg	chr2:135926491-135926752(+)$1	261	141	162	12.5739
ccc[ddddoooooodddd]cc	chr19:41938660-41938952(-)$1	292	6	27	11.9679
eeee[cccooooooccc333e	chr12:54105493-54105826(-)$1	333	39	60	14.1177
"ccc[cccooooooccc]ccc	chr21:46915618-46915835(+)$1	217	189	210	14.9026
d[ffffffooooooffffff]	chr7:128498694-128498965(+)$1	271	67	88	11.6018
ffff[cccooooooccc]fff	chr4:1019359-1019650(+)$1	291	183	204	14.0816
gg[eeeeeooooooeeeee]g	chr12:53873772-53874039(+)$1	267	69	90	11.1918
cc[bb[bboooooobb22bb]	chr12:49976580-49976824(+)$1	244	173	194	11.0379
ddd!!cccooooooccc22dd	chr22:24313487-24313753(-)$1	266	231	252	13.5153
"ccc[cccooooooccc]ccc	chr21:46915677-46915886(+)$1	209	130	151	14.9026
b22bbcccoooooocccdddd	chr7:44614161-44614497(-)$1	336	249	270	11.0941

#otherMatches

#Seq PSSM
auccauggauucaaccaagga	chrX:123045877-123046139(+)$1	262	150	171	14.1371
caggugugauccaccgcaccu	chr13:30779941-30780185(-)$1	244	23	44	12.0032
uggacaccgacacaggcacau	chr22:20052395-20052634(+)$1	239	145	166	11.8098
ACUCACGAAUGUAAUCGCUCA	chr15:75952772-75953084(+)$1	312	28	49	14.2617
uacacaugcauacacauacau	chr12:49976481-49976780(+)$1	299	26	47	14.4657
UCUGACGUAAUCAAACUCCAG	chr3:128532334-128532556(+)$1	222	130	151	13.0807
UAUGAGCCCUCCCUGGCCCAU	chr21:46915659-46915865(+)$1	206	148	169	14.9026
UAUGAGCCCUCCCUGGCCCAU	chr21:46915635-46915847(+)$1	212	172	193	14.9026
CAACUCCUUCCUCUAGGCAGU	chr14:65233000-65233244(-)$1	244	177	198	12.5297
ACCCUCCUGCCCAAAGGAGUG	chr8:28906825-28907117(+)$1	292	218	239	10.9364
CAGCCUGGAGAUCCCCGGGCA	chr17:4619009-4619264(+)$1	255	160	181	11.6018
gcugccuggacacacacacAG	chr4:1019789-1020085(+)$1	296	89	110	13.0169
AAACACUUUCACUUAAGCUUU	chr4:763751-764036(-)$1	285	147	168	13.7615
GUCUCUAGUUUCUUCGUUAGU	chr10:18829545-18829811(-)$1	266	73	94	11.8750
AGGUGGCGUAUCAUCGUACAC	chr4:1944037-1944298(+)$1	261	120	141	13.8189
GCUCCCUGCACACCCAGGCCA	chr16:4740458-4740730(+)$1	272	33	54	11.6052
GAAAAUUUUACAAUAUUUUUU	chr5:122165412-122165689(+)$1	277	232	253	11.5899
GGCCAGGACAGCCCUCCCAGC	chr17:3799996-3800322(-)$1	326	251	272	14.7428
UACAAGCCGAGAGAGGUUAGU	chr5:38950305-38950618(-)$1	313	259	280	11.9679
UGAUAAAUCGGGAAAUUUaca	chr5:112213509-112213809(-)$1	300	72	93	11.4461
AGUGUUCUGAGCAAGGGUUAC	chr17:37417404-37417663(-)$1	259	36	57	14.1371
UUCUCCGUAAGAUGGCGGACC	chr17:38296551-38296832(+)$1	281	239	260	10.9286
UCUGACGUAAUCAAACUCCAG	chr3:128532285-128532534(+)$1	249	179	200	13.0807
UUUGUACCUUGAUUGCCUUAC	chr3:38183659-38183982(+)$1	323	20	41	13.0672
UUGUAUCUGAAACAAGAGAAC	chr12:57450080-57450367(-)$1	287	88	109	14.4746
AAACACUUUCACUUAAGCUUU	chr4:763608-763895(-)$1	287	6	27	13.7615
CCCCCAGGGACUUACCUGGGG	chr15:40845942-40846178(-)$1	236	191	212	13.5874
UCUAGAUCUGGAUUGAUAAUA	chr1:36521814-36522129(+)$1	315	33	54	14.5314
UCUGGACGCACACACGUGCAG	chr4:1019470-1019737(+)$1	267	72	93	14.0816
AGCUCUGGUUUGAUUCAAGUU	chr1:153618152-153618449(+)$1	297	191	212	14.2126
acauguguauccacauacauG	chr21:46915548-46915806(+)$1	258	236	257	12.0032
UGAAGAAAUUGCAUUUUCUUU	chr2:106510392-106510677(+)$1	285	171	192	12.0032
GGGGUCUCUGGGCUGAGACUU	chr19:10488886-10489241(-)$1	355	90	111	11.5834
UAGCUAUCUUAUUUGAUGCUU	chr2:209170044-209170314(+)$1	270	244	265	12.5338
AGAAGGGACACACUUUCCUUC	chr16:23880276-23880568(+)$1	292	156	177	12.0032
CCUGGGCCGCAGAUGGCAAAG	chr16:4740129-4740374(+)$1	245	114	135	14.2617
UCCAGGCUACAUCAAGCACUG	chr17:34851655-34851999(-)$1	344	81	102	13.7582
ugcugugaacuuuguCACUUA	chr12:123998394-123998622(-)$1	228	49	70	11.1467
auccauggauucaaccaagga	chrX:123045813-123046077(+)$1	264	214	235	14.1371
cauauauaacagcauauauag	chr3:9849201-9849488(+)$1	287	76	97	11.7048
CCGUCCUCACACUGGCAGGAC	chr2:135926491-135926752(+)$1	261	141	162	12.5739
GCUGUUGCAGAACAGCAGGAG	chr19:41938660-41938952(-)$1	292	6	27	11.9679
GAGGACCACAUGGAUGGACAC	chr12:54105493-54105826(-)$1	333	39	60	14.1177
UAUGAGCCCUCCCUGGCCCAU	chr21:46915618-46915835(+)$1	217	189	210	14.9026
CCUUGUCUGUGUCAGGACAGU	chr7:128498694-128498965(+)$1	271	67	88	11.6018
UCUGGACGCACACACGUGCAG	chr4:1019359-1019650(+)$1	291	183	204	14.0816
CCGAGGACUUACCUGUCCUAG	chr12:53873772-53874039(+)$1	267	69	90	11.1918
uuguuaccaaagcaggagaag	chr12:49976580-49976824(+)$1	244	173	194	11.0379
CUGGGGCCACCAUGGGCAGCA	chr22:24313487-24313753(-)$1	266	231	252	13.5153
UAUGAGCCCUCCCUGGCCCAU	chr21:46915677-46915886(+)$1	209	130	151	14.9026
aucgcgccagccugggugaca	chr7:44614161-44614497(-)$1	336	249	270	11.0941

#DB
.(((.(((......))).)))	chrX:123045877-123046139(+)$1	1	150	171	14.1371
.(((((((......)))))))	chr13:30779941-30780185(-)$1	1	23	44	12.0032
((....((......))..)))	chr22:20052395-20052634(+)$1	1	145	166	11.8098
(((..(((......)))...)	chr15:75952772-75953084(+)$1	1	28	49	14.2617
((((.(((......)))...)	chr12:49976481-49976780(+)$1	1	26	47	14.4657
.(((..((......))..)))	chr3:128532334-128532556(+)$1	1	130	151	13.0807
.(((.(((......))).)))	chr21:46915659-46915865(+)$1	1	148	169	14.9026
.(((.(((......))).)))	chr21:46915635-46915847(+)$1	1	172	193	14.9026
..((((((......))).)))	chr14:65233000-65233244(-)$1	1	177	198	12.5297
((((((((......))))).)	chr8:28906825-28907117(+)$1	1	218	239	10.9364
(.((((((......)))))).	chr17:4619009-4619264(+)$1	1	160	181	11.6018
.(((..((......))..)))	chr4:1019789-1020085(+)$1	1	89	110	13.0169
(((..(((......)))..))	chr4:763751-764036(-)$1	1	147	168	13.7615
(.((...(......)...)).	chr10:18829545-18829811(-)$1	1	73	94	11.8750
((((((((......))).)))	chr4:1944037-1944298(+)$1	1	120	141	13.8189
(((.((((......))))..)	chr16:4740458-4740730(+)$1	1	33	54	11.6052
(((((..(......)..))))	chr5:122165412-122165689(+)$1	1	232	253	11.5899
(((..(((......)))..))	chr17:3799996-3800322(-)$1	1	251	272	14.7428
(((.((((......)))).))	chr5:38950305-38950618(-)$1	1	259	280	11.9679
((.(((((......)))))))	chr5:112213509-112213809(-)$1	1	72	93	11.4461
.(((.(((......))).)))	chr17:37417404-37417663(-)$1	1	36	57	14.1371
...(((((......))))).)	chr17:38296551-38296832(+)$1	1	239	260	10.9286
.(((..((......))..)))	chr3:128532285-128532534(+)$1	1	179	200	13.0807
((((((.(......)...)))	chr3:38183659-38183982(+)$1	1	20	41	13.0672
((((.(((......)))..))	chr12:57450080-57450367(-)$1	1	88	109	14.4746
(((..(((......)))..))	chr4:763608-763895(-)$1	1	6	27	13.7615
((((.(((......)))))))	chr15:40845942-40846178(-)$1	1	191	212	13.5874
((((.(((......)))..))	chr1:36521814-36522129(+)$1	1	33	54	14.5314
((((.(((......))).)))	chr4:1019470-1019737(+)$1	1	72	93	14.0816
((((.(((......)))))))	chr1:153618152-153618449(+)$1	1	191	212	14.2126
.(((((((......)))))))	chr21:46915548-46915806(+)$1	1	236	257	12.0032
.(((((((......)))))))	chr2:106510392-106510677(+)$1	1	171	192	12.0032
..((((((......)))))))	chr19:10488886-10489241(-)$1	1	90	111	11.5834
.(((.(((......)))))).	chr2:209170044-209170314(+)$1	1	244	265	12.5338
.(((((((......)))))))	chr16:23880276-23880568(+)$1	1	156	177	12.0032
(((..(((......)))...)	chr16:4740129-4740374(+)$1	1	114	135	14.2617
))((((((......))).)))	chr17:34851655-34851999(-)$1	1	81	102	13.7582
((..((((......))))...	chr12:123998394-123998622(-)$1	1	49	70	11.1467
.(((.(((......))).)))	chrX:123045813-123046077(+)$1	1	214	235	14.1371
..((((((......)))))).	chr3:9849201-9849488(+)$1	1	76	97	11.7048
((((((((......).)))))	chr2:135926491-135926752(+)$1	1	141	162	12.5739
(((.((((......)))).))	chr19:41938660-41938952(-)$1	1	6	27	11.9679
((((.(((......)))...)	chr12:54105493-54105826(-)$1	1	39	60	14.1177
.(((.(((......))).)))	chr21:46915618-46915835(+)$1	1	189	210	14.9026
(.((((((......)))))).	chr7:128498694-128498965(+)$1	1	67	88	11.6018
((((.(((......))).)))	chr4:1019359-1019650(+)$1	1	183	204	14.0816
((.(((((......))))).)	chr12:53873772-53874039(+)$1	1	69	90	11.1918
((.((.((......))..)).	chr12:49976580-49976824(+)$1	1	173	194	11.0379
(((..(((......)))..))	chr22:24313487-24313753(-)$1	1	231	252	13.5153
.(((.(((......))).)))	chr21:46915677-46915886(+)$1	1	130	151	14.9026
)..))(((......)))((((	chr7:44614161-44614497(-)$1	1	249	270	11.0941

#PSSM
: : 0.17	f : 0.13	" : 0.11	c : 0.11	e : 0.09	d : 0.07	! : 0.05	b : 0.05	g : 0.05	= : 0.03	[ : 0.01	i : 0.01	h : 0.01	
c : 0.33	g : 0.13	f : 0.13	e : 0.09	[ : 0.05	" : 0.03	= : 0.03	d : 0.03	: : 0.01	b : 0.01	i : 0.01	! : 0.01	h : 0.01	2 : 0.01	
c : 0.35	f : 0.19	g : 0.11	e : 0.09	[ : 0.05	= : 0.03	# : 0.01	b : 0.01	" : 0.01	i : 0.01	! : 0.01	d : 0.01	2 : 0.01	
c : 0.27	f : 0.17	! : 0.13	g : 0.11	e : 0.09	b : 0.05	[ : 0.05	= : 0.03	# : 0.01	i : 0.01	
[ : 0.31	! : 0.17	g : 0.09	f : 0.09	e : 0.07	d : 0.07	c : 0.05	b : 0.03	# : 0.01	" : 0.01	i : 0.01	
c : 0.50	g : 0.09	! : 0.07	e : 0.07	f : 0.07	d : 0.07	# : 0.01	" : 0.01	i : 0.01	[ : 0.01	
c : 0.50	g : 0.09	b : 0.09	e : 0.07	f : 0.07	d : 0.07	" : 0.01	! : 0.01	[ : 0.01	
c : 0.50	b : 0.09	g : 0.07	e : 0.07	f : 0.07	a : 0.07	d : 0.07	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
c : 0.50	b : 0.09	g : 0.07	e : 0.07	f : 0.07	a : 0.07	d : 0.07	
c : 0.50	b : 0.09	g : 0.07	e : 0.07	f : 0.07	d : 0.07	3 : 0.03	2 : 0.01	] : 0.01	
c : 0.50	2 : 0.11	g : 0.09	e : 0.07	f : 0.07	d : 0.07	3 : 0.03	
] : 0.23	2 : 0.21	3 : 0.11	f : 0.11	g : 0.09	d : 0.09	e : 0.07	= : 0.01	c : 0.01	
c : 0.27	f : 0.17	2 : 0.13	g : 0.09	3 : 0.07	e : 0.07	b : 0.03	] : 0.03	i : 0.01	= : 0.01	4 : 0.01	d : 0.01	
c : 0.35	f : 0.17	g : 0.11	3 : 0.07	] : 0.05	e : 0.03	b : 0.03	= : 0.03	d : 0.03	2 : 0.01	i : 0.01	4 : 0.01	
c : 0.35	g : 0.13	f : 0.13	e : 0.09	] : 0.07	d : 0.05	= : 0.03	4 : 0.03	i : 0.01	b : 0.01	: : 0.01	

#score	660.4428847521922
#seq	51
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_transcript_m3_run2.txt

#BEAR
"""ccc[ddddmmmmdddd]ccc333d	chr2:97525584-97525826(-)$1	242	36	63	15.8892
ffffff[ddddmmmmddddffffffhh	chr3:9876866-9877156(+)$1	290	140	167	13.4028
[bb####ddddllldddd4444bbfff	chr5:139939907-139940187(-)$1	280	114	141	12.5200
dddd"""ddddmmmmdddd333ddddc	chrX:48830100-48830383(-)$1	283	199	226	16.4617
!dddda[ddddmmmmdddd]a]dddd]	chr22:22051576-22051858(+)$1	282	249	276	15.5497
fffff!!ddddmmmmdddd22ffffff	chr11:10818626-10818975(-)$1	349	216	243	15.4082
eeeee!!ddddmmmmdddd333eeeee	chr15:34672616-34672910(-)$1	294	157	184	16.0983
cc!!ccc[ddddllldddd]ccc333c	chr1:1322153-1322396(-)$1	243	39	66	12.5207
[dddd!!ddddmmmmdddd22dddd]a	chr5:130977665-130977914(-)$1	249	61	88	15.8617
dddda!!ddddmmmmdddd22a]dddd	chr14:103196648-103196910(+)$1	262	36	63	15.5142
ccc[cccddddmmmmdddd333ccc]c	chr9:74969315-74969609(-)$1	294	221	248	16.2638
dddd"""ddddmmmmdddd333dddd3	chr12:123779042-123779286(-)$1	244	117	144	16.4677
dd!!cccddddmmmmdddd333cccdd	chr15:63900888-63901160(-)$1	272	171	198	15.9582
ggg####ddddmmmmddddggggggg:	chr1:213072225-213072548(+)$1	323	9	36	14.4705
e####ddddoooooodddd333eeeee	chr10:27828445-27828768(+)$1	323	54	81	12.1768
ffff[a[ddddmmmmdddd]a]fffff	chr19:2270127-2270383(+)$1	256	186	213	15.4476
fff####ddddmmmmdddd22ffffff	chr7:56169201-56169449(-)$1	248	34	61	16.0323
ffffff[ddddmmmmdddd333fffff	chr17:80445816-80446079(+)$1	263	197	224	15.6667
g!!ccc[ddddnnnnnddddccc]ggg	chr8:102217353-102217621(-)$1	268	211	238	11.9320
[dddd!!ddddmmmmdddd333dddd]	chr11:9611093-9611379(+)$1	286	227	254	16.4018
$$dddd[ddddmmmmdddddddd333e	chr3:128889111-128889370(-)$1	259	54	81	13.9297
ccc####ddddnnnnnddddccc]eee	chr12:57489689-57490011(-)$1	322	242	269	11.9667
eeeee!!ddddmmmmdddd]eeeee22	chr7:1474075-1474314(-)$1	239	201	228	14.5454
c[a[cccddddmmmmdddd]ccc]a]c	chrM:9776-10035(+)$1	259	188	215	15.3582
fffff!!ddddmmmmdddd22ffffff	chr11:10818571-10818823(-)$1	252	64	91	15.4082
bb[ddddddddmmmmdddd]dddd]bb	chr2:27249268-27249510(+)$1	242	146	173	13.1202
bb!!bb[ddddmmmmddddbb22bbbb	chr12:69236510-69236809(+)$1	299	251	278	12.4240
ggg[bb[ddddmmmmdddd22bb]ggg	chr6:125303658-125303931(+)$1	273	220	247	15.3488
ggg"""ddddnnnnndddd333ggggg	chr1:27108273-27108510(+)$1	237	120	147	12.9815
bb[a[a[ddddmmmmdddd]a]abb]c	chr22:20098650-20098882(+)$1	232	30	57	15.2496
eeeee]addddmmmmddddccceeeee	chr9:138824760-138825059(-)$1	299	71	98	13.1926
+eeeee[ddddmmmmdddd]eeeee22	chr4:129029707-129029988(+)$1	281	163	190	13.6622
gggggggddddmmmmdddd22gggggg	chrM:3224-3459(+)$1	235	197	224	15.2676
c[a####ddddnnnnndddd4444a]c	chr17:43227213-43227473(+)$1	260	146	173	12.6611
##dddd[ddddmmmmdddd22dddd00	chrX:64961619-64961881(+)$1	262	110	137	14.6070
hhh####ddddmmmmddddhhhhhhhh	chr16:28854104-28854391(-)$1	287	93	120	13.2614
ff[ccc[ddddnnnnndddd]ccc333	chr17:38544763-38545055(-)$1	292	102	129	11.9629
c[bb[a[ddddmmmmddddabbccc]c	chr3:48555115-48555373(-)$1	258	45	72	14.5286
fff####ddddmmmmdddd22ffffff	chr17:26904926-26905142(-)$1	216	154	181	16.0323
b[dddd[ddddmmmmdddd]dddd]bb	chr3:6552182-6552460(+)$1	278	2	29	14.1153
"""ccc[ddddmmmmdddd22ccc22e	chr19:50436931-50437251(+)$1	320	98	125	16.0663
!dddda[ddddmmmmdddd]a]dddd]	chr22:22051760-22052031(+)$1	271	65	92	15.5497
d"""bb[ddddmmmmdddd]bb333dd	chr17:34171740-34172025(+)$1	285	37	64	14.6142
dd!!cccddddmmmmdddd333cccdd	chr15:63900829-63901088(-)$1	259	99	126	15.9582
!!eeeeeddddmmmmdddd333eeeee	chr1:172580426-172580702(+)$1	276	197	224	15.3582
!ccc[a[ddddllldddd]accc]hhh	chrX:153671437-153671682(+)$1	245	61	88	12.0576

#otherMatches

#Seq PSSM
AGGGCUGUGAAUGUUUUCAGGGUGGGG	chr2:97525584-97525826(-)$1	242	36	63	15.8892
UGAAGCUAGGGAAGCCCCUGCUUCGAU	chr3:9876866-9877156(+)$1	290	140	167	13.4028
AGGAGGAGCCAUUGUGGCAGUGCCCUG	chr5:139939907-139940187(-)$1	280	114	141	12.5200
GUGUAAAGGCUAUGCAGCCAAAAUACC	chrX:48830100-48830383(-)$1	283	199	226	16.4617
UUAAACAUUUGACAUCAGAAGCUUUAU	chr22:22051576-22051858(+)$1	282	249	276	15.5497
UGCCCUUGAAGUGGUUUUUGUGGGUGU	chr11:10818626-10818975(-)$1	349	216	243	15.4082
UGGGUGUGAAAAACCUUUCCUAGCUUA	chr15:34672616-34672910(-)$1	294	157	184	16.0983
CGGCAGCAGCUCUGAGGGCAGCUCAAU	chr1:1322153-1322396(-)$1	243	39	66	12.5207
UUAUGGUACAGACAGUUGUUACAUAUC	chr5:130977665-130977914(-)$1	249	61	88	15.8617
GUAAGUAAUAUUUUAAUGUCUCUUUGC	chr14:103196648-103196910(+)$1	262	36	63	15.5142
AUGUACAGAGGGAAACUUCACUUGUUC	chr9:74969315-74969609(-)$1	294	221	248	16.2638
UGCACUAUUGAAAAAUCGAGAUUGUAU	chr12:123779042-123779286(-)$1	244	117	144	16.4677
GGAAUGGUACAUUUUUGUAAAUCCACC	chr15:63900888-63901160(-)$1	272	171	198	15.9582
uguguaaucuaaacauagaacagauaa	chr1:213072225-213072548(+)$1	323	9	36	14.4705
ACUAACACAUGUACUUGUGAUUUGUUC	chr10:27828445-27828768(+)$1	323	54	81	12.1768
GCGUGCGCUGCGGGAGCGGGGAGCGCU	chr19:2270127-2270383(+)$1	256	186	213	15.4476
UCCUUGCUUCAGAAUUGAAAUGGAAGU	chr7:56169201-56169449(-)$1	248	34	61	16.0323
GCCUGGACAUCAAGUGGUGAAGUCAGG	chr17:80445816-80446079(+)$1	263	197	224	15.6667
GUCAGCUGCCAGAGUGUGGCGCUCCCG	chr8:102217353-102217621(-)$1	268	211	238	11.9320
UGAUGCCUGUUUUCUAAUAUUUUAUCU	chr11:9611093-9611379(+)$1	286	227	254	16.4018
ACAAUUGAGGCUACAGCCUAAUUAUUU	chr3:128889111-128889370(-)$1	259	54	81	13.9297
CCAAAUUCCUGUUAGCCAGGUGGAGGC	chr12:57489689-57490011(-)$1	322	242	269	11.9667
CCCGGCAUUCGGACUUGGACUCGGGAA	chr7:1474075-1474314(-)$1	239	201	228	14.5454
AUGUCUCCAUCUAUUGAUGAGGGUCUU	chrM:9776-10035(+)$1	259	188	215	15.3582
UGCCCUUGAAGUGGUUUUUGUGGGUGU	chr11:10818571-10818823(-)$1	252	64	91	15.4082
GUUGGUGGGACCCCUGUCCACACCCAC	chr2:27249268-27249510(+)$1	242	146	173	13.1202
AAAUACUAAGUUCUAACUUGUCAUUCC	chr12:69236510-69236809(+)$1	299	251	278	12.4240
GAUAUGCAAACACUGGUUUCUCAAGUC	chr6:125303658-125303931(+)$1	273	220	247	15.3488
UUGAAGUUCUGAUGAAGAAACACAAUU	chr1:27108273-27108510(+)$1	237	120	147	12.9815
ACUGGUGGCCCCUAUGGGUGGGUGUGC	chr22:20098650-20098882(+)$1	232	30	57	15.2496
CUCCAGUGCUCCUCUGGGCUCUUGAGU	chr9:138824760-138825059(-)$1	299	71	98	13.1926
AUAUCAACUUGGGUCCAAGAUGAUAGU	chr4:129029707-129029988(+)$1	281	163	190	13.6622
GUUGUAGGCCCCUACGGGCUACUACAA	chrM:3224-3459(+)$1	235	197	224	15.2676
CGGAGACGUACGAGCGGUACCACACGG	chr17:43227213-43227473(+)$1	260	146	173	12.6611
UUUGGAGGGGUUUAUGCUCAAUCCAUG	chrX:64961619-64961881(+)$1	262	110	137	14.6070
UGAGUGUGCAGAUCUCUGCUCAGCUUC	chr16:28854104-28854391(-)$1	287	93	120	13.2614
UUCAUUUUGGGAAAUCUCCAUAAUUUC	chr17:38544763-38545055(-)$1	292	102	129	11.9629
CAUGAGUGGGGGCAACCCCCCGGCCUC	chr3:48555115-48555373(-)$1	258	45	72	14.5286
UACAAGGCCUGGCCCCAGGAGGUACUA	chr17:26904926-26905142(-)$1	216	154	181	16.0323
AUGGGUCAACUUCAAAGUUAACUUUUG	chr3:6552182-6552460(+)$1	278	2	29	14.1153
GGGCAGGGCUGUAGUUGGUGACUGGGU	chr19:50436931-50437251(+)$1	320	98	125	16.0663
UUAAACAUUUGACAUCAGAAGCUUUAU	chr22:22051760-22052031(+)$1	271	65	92	15.5497
gaggcuaugguggagaccgaggaggcu	chr17:34171740-34172025(+)$1	285	37	64	14.6142
GGAAUGGUACAUUUUUGUAAAUCCACC	chr15:63900829-63901088(-)$1	259	99	126	15.9582
CUUUUAGUAGUGAUAACUGUUUUUAAA	chr1:172580426-172580702(+)$1	276	197	224	15.3582
CGAGUGAGCUGCCCCAGCCCCUCCCAG	chrX:153671437-153671682(+)$1	245	61	88	12.0576

#DB
...(((.((((....)))).)))...)	chr2:97525584-97525826(-)$1	1	36	63	15.8892
((((((.((((....))))))))))))	chr3:9876866-9877156(+)$1	1	140	167	13.4028
.((....((((...))))....)))))	chr5:139939907-139940187(-)$1	1	114	141	12.5200
((((...((((....))))...)))))	chrX:48830100-48830383(-)$1	1	199	226	16.4617
.(((((.((((....)))).).)))).	chr22:22051576-22051858(+)$1	1	249	276	15.5497
(((((..((((....))))..))))))	chr11:10818626-10818975(-)$1	1	216	243	15.4082
(((((..((((....))))...)))))	chr15:34672616-34672910(-)$1	1	157	184	16.0983
((..(((.((((...)))).)))...)	chr1:1322153-1322396(-)$1	1	39	66	12.5207
.((((..((((....))))..)))).)	chr5:130977665-130977914(-)$1	1	61	88	15.8617
(((((..((((....))))..).))))	chr14:103196648-103196910(+)$1	1	36	63	15.5142
(((.(((((((....))))...))).)	chr9:74969315-74969609(-)$1	1	221	248	16.2638
((((...((((....))))...)))).	chr12:123779042-123779286(-)$1	1	117	144	16.4677
((..(((((((....))))...)))))	chr15:63900888-63901160(-)$1	1	171	198	15.9582
(((....((((....))))))))))).	chr1:213072225-213072548(+)$1	1	9	36	14.4705
(....((((......))))...)))))	chr10:27828445-27828768(+)$1	1	54	81	12.1768
((((.(.((((....)))).).)))))	chr19:2270127-2270383(+)$1	1	186	213	15.4476
(((....((((....))))..))))))	chr7:56169201-56169449(-)$1	1	34	61	16.0323
((((((.((((....))))...)))))	chr17:80445816-80446079(+)$1	1	197	224	15.6667
(..(((.((((.....))))))).)))	chr8:102217353-102217621(-)$1	1	211	238	11.9320
.((((..((((....))))...)))).	chr11:9611093-9611379(+)$1	1	227	254	16.4018
..((((.((((....))))))))...)	chr3:128889111-128889370(-)$1	1	54	81	13.9297
(((....((((.....))))))).)))	chr12:57489689-57490011(-)$1	1	242	269	11.9667
(((((..((((....)))).)))))..	chr7:1474075-1474314(-)$1	1	201	228	14.5454
(.(.(((((((....)))).))).).)	chrM:9776-10035(+)$1	1	188	215	15.3582
(((((..((((....))))..))))))	chr11:10818571-10818823(-)$1	1	64	91	15.4082
((.((((((((....)))).)))).))	chr2:27249268-27249510(+)$1	1	146	173	13.1202
((..((.((((....))))))..))))	chr12:69236510-69236809(+)$1	1	251	278	12.4240
(((.((.((((....))))..)).)))	chr6:125303658-125303931(+)$1	1	220	247	15.3488
(((...((((.....))))...)))))	chr1:27108273-27108510(+)$1	1	120	147	12.9815
((.(.(.((((....)))).).))).)	chr22:20098650-20098882(+)$1	1	30	57	15.2496
))))).)((((....))))((((((((	chr9:138824760-138825059(-)$1	1	71	98	13.1926
.(((((.((((....)))).)))))..	chr4:129029707-129029988(+)$1	1	163	190	13.6622
(((((((((((....))))..))))))	chrM:3224-3459(+)$1	1	197	224	15.2676
(.(....((((.....))))....).)	chr17:43227213-43227473(+)$1	1	146	173	12.6611
..((((.((((....))))..))))..	chrX:64961619-64961881(+)$1	1	110	137	14.6070
(((....((((....))))))))))))	chr16:28854104-28854391(-)$1	1	93	120	13.2614
((.(((.((((.....)))).)))...	chr17:38544763-38545055(-)$1	1	102	129	11.9629
(.((.(.((((....)))))))))).)	chr3:48555115-48555373(-)$1	1	45	72	14.5286
(((....((((....))))..))))))	chr17:26904926-26905142(-)$1	1	154	181	16.0323
(.((((.((((....)))).)))).))	chr3:6552182-6552460(+)$1	1	2	29	14.1153
...(((.((((....))))..)))..)	chr19:50436931-50437251(+)$1	1	98	125	16.0663
.(((((.((((....)))).).)))).	chr22:22051760-22052031(+)$1	1	65	92	15.5497
(...((.((((....)))).))...))	chr17:34171740-34172025(+)$1	1	37	64	14.6142
((..(((((((....))))...)))))	chr15:63900829-63901088(-)$1	1	99	126	15.9582
..(((((((((....))))...)))))	chr1:172580426-172580702(+)$1	1	197	224	15.3582
.(((.(.((((...)))).)))).)))	chrX:153671437-153671682(+)$1	1	61	88	12.0576

#PSSM
f : 0.17	d : 0.13	c : 0.13	g : 0.10	! : 0.08	e : 0.08	b : 0.08	[ : 0.06	" : 0.04	$ : 0.02	+ : 0.02	# : 0.02	h : 0.02	
d : 0.19	f : 0.17	b : 0.08	e : 0.08	c : 0.08	g : 0.08	[ : 0.08	" : 0.06	# : 0.04	! : 0.04	$ : 0.02	h : 0.02	
d : 0.21	f : 0.15	e : 0.10	! : 0.10	g : 0.08	" : 0.06	c : 0.06	[ : 0.06	b : 0.04	a : 0.04	# : 0.02	h : 0.02	
d : 0.23	# : 0.17	c : 0.10	f : 0.10	e : 0.10	! : 0.08	[ : 0.06	" : 0.04	a : 0.02	g : 0.02	b : 0.02	
c : 0.19	# : 0.17	d : 0.17	e : 0.10	f : 0.08	[ : 0.08	" : 0.06	b : 0.06	a : 0.02	g : 0.02	
c : 0.19	# : 0.15	! : 0.15	a : 0.13	d : 0.10	" : 0.06	b : 0.06	f : 0.04	e : 0.04	] : 0.02	g : 0.02	
[ : 0.41	# : 0.15	! : 0.15	c : 0.10	d : 0.06	" : 0.04	a : 0.02	g : 0.02	e : 0.02	
d : 0.97	[ : 0.02	
d : 0.99	
d : 0.97	o : 0.02	
d : 0.95	o : 0.02	n : 0.02	
m : 0.80	n : 0.10	l : 0.04	d : 0.02	o : 0.02	
m : 0.80	n : 0.10	l : 0.06	o : 0.02	
m : 0.80	n : 0.10	l : 0.06	o : 0.02	
m : 0.80	n : 0.10	d : 0.04	l : 0.02	o : 0.02	
d : 0.91	n : 0.08	
d : 0.99	
d : 0.99	
d : 0.95	4 : 0.02	] : 0.02	
] : 0.26	3 : 0.23	2 : 0.21	d : 0.10	a : 0.04	f : 0.02	4 : 0.02	g : 0.02	b : 0.02	c : 0.02	h : 0.02	
3 : 0.23	2 : 0.21	c : 0.15	a : 0.08	d : 0.06	b : 0.06	4 : 0.04	e : 0.04	f : 0.02	g : 0.02	h : 0.02	] : 0.02	
3 : 0.23	c : 0.19	f : 0.10	d : 0.10	] : 0.08	b : 0.06	4 : 0.04	g : 0.04	e : 0.04	a : 0.02	2 : 0.02	h : 0.02	
c : 0.26	d : 0.21	f : 0.15	e : 0.13	g : 0.06	b : 0.04	] : 0.02	2 : 0.02	a : 0.02	4 : 0.02	h : 0.02	3 : 0.02	
d : 0.21	f : 0.15	e : 0.13	c : 0.13	] : 0.10	3 : 0.08	b : 0.06	g : 0.06	4 : 0.02	h : 0.02	
f : 0.17	d : 0.17	e : 0.15	3 : 0.10	g : 0.10	c : 0.08	a : 0.04	] : 0.04	b : 0.04	h : 0.04	2 : 0.02	
d : 0.19	f : 0.15	] : 0.13	e : 0.10	g : 0.10	3 : 0.08	h : 0.06	2 : 0.06	b : 0.06	0 : 0.02	
f : 0.15	c : 0.15	e : 0.15	d : 0.10	g : 0.08	h : 0.06	] : 0.06	b : 0.06	3 : 0.04	2 : 0.04	a : 0.02	: : 0.02	0 : 0.02	

#score	669.2737888097732
#seq	46
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_CDS_m1_run1.txt

#BEAR
%eeeeevvvvvvvvvvvvveeeeegg	chr10:124924448-124924704(+)$1	256	109	135	23.1855
[fffffftttttttttttffffff]a	chr17:46620956-46621206(-)$1	250	17	43	23.2139
iiiiiiivvvvvvvvvvvvviiiiii	chr16:31501540-31501762(-)$1	222	46	72	23.5318
dddd[bbuuuuuuuuuuuubb]dddd	chr22:42981220-42981474(-)$1	254	86	112	22.3928
iiiiiiivvvvvvvvvvvvviiiiii	chr16:31501600-31501871(-)$1	271	155	181	23.5318
ddd!!bbtttttttttttbb]dddd]	chr19:1584999-1585267(-)$1	268	195	221	21.6540
!ffffffvvvvvvvvvvvvvffffff	chr12:133291343-133291625(+)$1	282	80	106	23.8893
dd[cccbbtttttttttttbb]cccd	chr18:12427188-12427423(+)$1	235	114	140	21.6676
Gbbddddtttttttttttdddd]bb:	chr1:46108049-46108271(-)$1	222	117	143	20.3279
!ffffffuuuuuuuuuuuuffffff]	chr11:770212-770511(-)$1	299	210	236	23.9964
[fffffftttttttttttffffff]f	chr6:32942138-32942390(+)$1	252	40	66	23.0731
cceeeeettttttttttteeeee22c	chr12:57910632-57910841(-)$1	209	139	165	22.6071
!fffffftttttttttttffffff22	chr1:185278039-185278352(-)$1	313	280	306	23.0928
!!cccbbuuuuuuuuuuuubb]ccc]	chr16:2871327-2871612(+)$1	285	56	82	23.3539
=======uuuuuuuuuuuu=======	chr16:30959014-30959280(+)$1	266	228	254	23.8446
"""dddduuuuuuuuuuuudddd333	chr17:73823396-73823703(-)$1	307	138	164	24.2443
$$$$cccuuuuuuuuuuuucccffff	chr17:79826280-79826580(-)$1	300	123	149	23.0751
ddd[ccctttttttttttcccddddC	chr12:120534316-120534608(-)$1	292	258	284	21.7155
dd[ddddwwwwwwwwwwwwwwddddd	chr1:15987241-15987518(+)$1	277	49	75	21.4405
dddddddtttttttttttdddd]ddd	chr7:100734825-100735060(+)$1	235	15	41	21.7692
ffffyyyyyyyyyyyyyyyyffffff	chr8:124221611-124221883(+)$1	272	39	65	19.8138
ggggggwwwwwwwwwwwwwwgggggg	chr14:21484899-21485178(-)$1	279	214	240	22.1947
#fffffftttttttttttffffff22	chr2:37429825-37430076(+)$1	251	147	173	23.0535
fffffwwwwwwwwwwwwwwffffff:	chr16:31502018-31502267(-)$1	249	29	55	21.1340
ddddccctttttttttttccc]dddd	chr19:49416642-49416853(+)$1	211	38	64	22.3103
ee!!ddddtttttttttttdddd22e	chr15:35271727-35271958(-)$1	231	170	196	21.9332
cc!!bbyyyyyyyyyyyyyyyybb]c	chr17:17714967-17715211(-)$1	244	75	101	19.3653
:ccc[bbvvvvvvvvvvvvvbbcccE	chr19:41246784-41247068(-)$1	284	77	103	21.3539
bb[ddddvvvvvvvvvvvvvdddd]b	chr19:45911699-45911976(-)$1	277	215	241	23.2360
e!!ddddvvvvvvvvvvvvvdddd]e	chr3:184063071-184063341(+)$1	270	167	193	23.7124
ffffffvvvvvvvvvvvvvffffffc	chr1:15987653-15987909(+)$1	256	185	211	23.4728
eeee[bbvvvvvvvvvvvvvbb]eee	chr1:36826772-36827002(-)$1	230	194	220	22.7345
::eeeeettttttttttteeeee:bb	chr19:868106-868417(-)$1	311	265	291	19.5848
##eeeeeuuuuuuuuuuuueeeee55	chr1:203800686-203800904(+)$1	218	111	137	22.7439
ccc:cccvvvvvvvvvvvvvccc:GG	chr12:120534228-120534480(-)$1	252	155	181	20.8289
dd[ddddvvvvvvvvvvvvvdddd]d	chr1:228680713-228680932(+)$1	219	129	155	23.5814
C:fffffftttttttttttffffff:	chr14:104177277-104177591(-)$1	314	96	122	19.9010
Iffffffuuuuuuuuuuuuffffff:	chr7:72397248-72397547(+)$1	299	205	231	21.9653
'ffffffuuuuuuuuuuuuffffffg	chr1:16202596-16202873(+)$1	277	236	262	23.2477
###ddddtttttttttttddddbb33	chr7:1037282-1037534(-)$1	252	101	127	22.7312
hhhhhhhwwwwwwwwwwwwwwhhhhh	chr11:46678552-46678785(+)$1	233	131	157	19.1049
""cccwwwwwwwwwwwwwwccc333b	chr6:32948023-32948240(+)$1	217	184	210	22.2406
!!bb[ccctttttttttttcccbb]b	chr19:49377034-49377287(+)$1	253	42	68	22.2120
[eeeeevvvvvvvvvvvvveeeeebb	chr1:32374447-32374661(-)$1	214	84	110	23.3180
:eeeeevvvvvvvvvvvvveeeee::	chr21:39528305-39528592(+)$1	287	224	250	21.3469
fffffffvvvvvvvvvvvvvffffff	chr7:149576620-149576874(+)$1	254	206	232	23.5184
"""dddduuuuuuuuuuuudddd333	chr17:73823503-73823823(-)$1	320	258	284	24.2443
c"""ddddtttttttttttdddd333	chr1:156713888-156714110(-)$1	222	7	33	22.7118
ddd[ddddtttttttttttdddd333	chr17:44171850-44172163(-)$1	313	130	156	22.4824
ccc[cccuuuuuuuuuuuucccccc2	chr17:75212501-75212767(+)$1	266	142	168	23.7367
##eeeeeuuuuuuuuuuuueeeee55	chr1:203800704-203800954(+)$1	250	93	119	22.7439
ffff[bbwwwwwwwwwwwwwwbb]ff	chr1:11849143-11849437(-)$1	294	85	111	21.0083
dd[ddddvvvvvvvvvvvvvdddd]d	chr1:228680742-228681015(+)$1	273	100	126	23.5814
eeeeeeeuuuuuuuuuuuueeeee33	chr11:118916398-118916629(-)$1	231	185	211	24.0337
"fffffftttttttttttffffffee	chr16:31501703-31501970(-)$1	267	59	85	22.7848
ddeeeeeuuuuuuuuuuuueeeee22	chr17:61510614-61510895(-)$1	281	171	197	23.5968
e####ccctttttttttttccc333e	chr16:74485858-74486142(-)$1	284	133	159	22.5265
"eeeeevvvvvvvvvvvvveeeee]b	chr16:29822214-29822494(+)$1	280	182	208	23.9020
eeee[bbuuuuuuuuuuuubbeeeee	chr8:103848404-103848687(-)$1	283	71	97	22.8578
fffffwwwwwwwwwwwwwwffffff:	chr20:3765559-3765886(-)$1	327	134	160	21.1340
ggggggvvvvvvvvvvvvvggggggg	chr1:246078731-246079043(-)$1	312	23	49	23.4398
!!bbccctttttttttttccc]bb66	chr14:23528238-23528499(-)$1	261	192	218	21.8613
d[eeeeeuuuuuuuuuuuueeeeedd	chr19:3121237-3121477(+)$1	240	114	140	23.4200

#otherMatches

#Seq PSSM
UGCAGGUCCACCUAAUCAUCCUGUGA	chr10:124924448-124924704(+)$1	256	109	135	23.1855
UUUUGGAGGAUGGGGUAGUCCGAACU	chr17:46620956-46621206(-)$1	250	17	43	23.2139
GCGGAGGACUGCCCACCCCACCUCUG	chr16:31501540-31501762(-)$1	222	46	72	23.5318
UUGUGUGUAUUAAGCUUUUCAAACAA	chr22:42981220-42981474(-)$1	254	86	112	22.3928
GCGGAGGACUGCCCACCCCACCUCUG	chr16:31501600-31501871(-)$1	271	155	181	23.5318
CUCCUCCAACCAGGUCAAGGUGAGUG	chr19:1584999-1585267(-)$1	268	195	221	21.6540
AUCUUGUAUUUCAACAUCAGGCGAGA	chr12:133291343-133291625(+)$1	282	80	106	23.8893
UAUCAUCCAAUGCAAAGAAGGUAUGU	chr18:12427188-12427423(+)$1	235	114	140	21.6676
AGCUGGCAAACAGCAUCAGCCAUGCA	chr1:46108049-46108271(-)$1	222	117	143	20.3279
GUGAUGCACCCUGUCCUAAGCAUUGA	chr11:770212-770511(-)$1	299	210	236	23.9964
GCAGAUGCACUUUUUCCUCAUUUGGA	chr6:32942138-32942390(+)$1	252	40	66	23.0731
CUAGCUGAAGAGAAUGAACGGCUCAA	chr12:57910632-57910841(-)$1	209	139	165	22.6071
UACAUAUAUUUAAAUUAAGUGUGUUU	chr1:185278039-185278352(-)$1	313	280	306	23.0928
CUUGGCCUGUAACAAGAAUGGACUGU	chr16:2871327-2871612(+)$1	285	56	82	23.3539
CGCGGGCAGCCGCUCUUCAGCUCGCG	chr16:30959014-30959280(+)$1	266	228	254	23.8446
GGUGGCCAUUACUAGAGGGGGCCUGG	chr17:73823396-73823703(-)$1	307	138	164	24.2443
CUAUCUCCCCGUCACACCCGAGGCCU	chr17:79826280-79826580(-)$1	300	123	149	23.0751
GCCUCUGAGCUCCAAACCCAGGGCAG	chr12:120534316-120534608(-)$1	292	258	284	21.7155
UUACAGCCCCCAGAAACUAAUGUUGA	chr1:15987241-15987518(+)$1	277	49	75	21.4405
cuacuaaaaauacaaaaauuagcuag	chr7:100734825-100735060(+)$1	235	15	41	21.7692
UUUUUUCCUCCUUAGUUCCUGAAAGU	chr8:124221611-124221883(+)$1	272	39	65	19.8138
UUCUGCUAUAACAAUAAACUGUAGAG	chr14:21484899-21485178(-)$1	279	214	240	22.1947
CUUGGAUCCCAUAUUUUCAUCCAAUA	chr2:37429825-37430076(+)$1	251	147	173	23.0535
GCUGGAAGACCGAGAAGCACCAGCUA	chr16:31502018-31502267(-)$1	249	29	55	21.1340
CAUGGCAUCCAGACUUCUUGCUCAUG	chr19:49416642-49416853(+)$1	211	38	64	22.3103
ACAGAGAUGAAACAUGACAGUCUGAG	chr15:35271727-35271958(-)$1	231	170	196	21.9332
AGUUGUCCCUUCUCACCUCCCAGCUC	chr17:17714967-17715211(-)$1	244	75	101	19.3653
UCUGUGCAUCCCCCAUCCCAGCcagg	chr19:41246784-41247068(-)$1	284	77	103	21.3539
UCUCCUUUUUCUUCUUCCCUGAGGUG	chr19:45911699-45911976(-)$1	277	215	241	23.2360
CCUGCCCUCCCGGAGCCUAUGGGUUG	chr3:184063071-184063341(+)$1	270	167	193	23.7124
UUCACCCAAACUUUUAGCAGGUGAGG	chr1:15987653-15987909(+)$1	256	185	211	23.4728
CUUUGGGAAAAAUGGGUGGGCUGGGA	chr1:36826772-36827002(-)$1	230	194	220	22.7345
UCCCAGGACCCCCAGAUCCCUGGACC	chr19:868106-868417(-)$1	311	265	291	19.5848
CAGGAGUUUCCAGUCUUUUACUCCAC	chr1:203800686-203800904(+)$1	218	111	137	22.7439
GCCAUGGCUUCUCAUUUACACCAACA	chr12:120534228-120534480(-)$1	252	155	181	20.8289
GGAGGCUGAGAAGGAGGAGGGGCUCC	chr1:228680713-228680932(+)$1	219	129	155	23.5814
CUCAGAAUUUGCAUCCAUUGUUCUGU	chr14:104177277-104177591(-)$1	314	96	122	19.9010
GGAGGAAGAAGACCAAAUAUUCCUUG	chr7:72397248-72397547(+)$1	299	205	231	21.9653
GGGCUCUAUUACGCUUCUCGGAGUCG	chr1:16202596-16202873(+)$1	277	236	262	23.2477
AUGAGCACUUCUCCACCCUGCUGGCC	chr7:1037282-1037534(-)$1	252	101	127	22.7312
UGGGCACCAUCACUCUUUCUUGUGCU	chr11:46678552-46678785(+)$1	233	131	157	19.1049
CAGCUCAAUUCUACUAAAAAGCCCCC	chr6:32948023-32948240(+)$1	217	184	210	22.2406
AAGAAGCUGUAAAGAAAGAAGCUCAC	chr19:49377034-49377287(+)$1	253	42	68	22.2120
AUUCUUGUAUUUUCAGAAAAAGAAGG	chr1:32374447-32374661(-)$1	214	84	110	23.3180
CUCACUUGUUUCCAUAUUUAGUGAAU	chr21:39528305-39528592(+)$1	287	224	250	21.3469
UCAGCAGCUCUGCCACCAUCCUGCUG	chr7:149576620-149576874(+)$1	254	206	232	23.5184
GGUGGCCAUUACUAGAGGGGGCCUGG	chr17:73823503-73823823(-)$1	320	258	284	24.2443
CAGAGCCCGAAGCUGCAGAGGGUGAC	chr1:156713888-156714110(-)$1	222	7	33	22.7118
CGGGCAGCUAUUGUCAGCCGCUGGAA	chr17:44171850-44172163(-)$1	313	130	156	22.4824
UGACAGCUGCCAAGAAAAUGCUUCAC	chr17:75212501-75212767(+)$1	266	142	168	23.7367
CAGGAGUUUCCAGUCUUUUACUCCAC	chr1:203800704-203800954(+)$1	250	93	119	22.7439
AGGCGUUGGUGCCACUUCUUAAAGGC	chr1:11849143-11849437(-)$1	294	85	111	21.0083
GGAGGCUGAGAAGGAGGAGGGGCUCC	chr1:228680742-228681015(+)$1	273	100	126	23.5814
AAAUCCUUUGCAAAGAACUGGGGUUG	chr11:118916398-118916629(-)$1	231	185	211	24.0337
UCCUCACCCCCACUUCCUGUGAGGCU	chr16:31501703-31501970(-)$1	267	59	85	22.7848
AUCACUCCAGCCCCAUAAAGAGUGUC	chr17:61510614-61510895(-)$1	281	171	197	23.5968
CAAUGGCUUAUAAAGGUUUAGUGUGG	chr16:74485858-74486142(-)$1	284	133	159	22.5265
UCGUGUUCCUGUGUCCCCUGCAUGUA	chr16:29822214-29822494(+)$1	280	182	208	23.9020
UCUUACUACAUAUUGCAACAGAAGAU	chr8:103848404-103848687(-)$1	283	71	97	22.8578
AGGAGGAAGAUGAGGAGAGCUCCUCG	chr20:3765559-3765886(-)$1	327	134	160	21.1340
UAGCAAUAAUAAUAACCAUUUGUUAA	chr1:246078731-246079043(-)$1	312	23	49	23.4398
UAUGGCCACAGAGGGAUAGGCACAGU	chr14:23528238-23528499(-)$1	261	192	218	21.8613
GAUGUACAUCUCUCCCUCCGUACACU	chr19:3121237-3121477(+)$1	240	114	140	23.4200

#DB
.(((((.............)))))))	chr10:124924448-124924704(+)$1	1	109	135	23.1855
.((((((...........)))))).)	chr17:46620956-46621206(-)$1	1	17	43	23.2139
(((((((.............))))))	chr16:31501540-31501762(-)$1	1	46	72	23.5318
((((.((............)).))))	chr22:42981220-42981474(-)$1	1	86	112	22.3928
(((((((.............))))))	chr16:31501600-31501871(-)$1	1	155	181	23.5318
(((..((...........)).)))).	chr19:1584999-1585267(-)$1	1	195	221	21.6540
.((((((.............))))))	chr12:133291343-133291625(+)$1	1	80	106	23.8893
((.(((((...........)).))))	chr18:12427188-12427423(+)$1	1	114	140	21.6676
(((((((...........)))).)).	chr1:46108049-46108271(-)$1	1	117	143	20.3279
.((((((............)))))).	chr11:770212-770511(-)$1	1	210	236	23.9964
.((((((...........)))))).)	chr6:32942138-32942390(+)$1	1	40	66	23.0731
(((((((...........)))))..)	chr12:57910632-57910841(-)$1	1	139	165	22.6071
.((((((...........))))))..	chr1:185278039-185278352(-)$1	1	280	306	23.0928
..(((((............)).))).	chr16:2871327-2871612(+)$1	1	56	82	23.3539
(((((((............)))))))	chr16:30959014-30959280(+)$1	1	228	254	23.8446
...((((............))))...	chr17:73823396-73823703(-)$1	1	138	164	24.2443
....(((............)))))))	chr17:79826280-79826580(-)$1	1	123	149	23.0751
(((.(((...........))))))))	chr12:120534316-120534608(-)$1	1	258	284	21.7155
((.((((..............)))))	chr1:15987241-15987518(+)$1	1	49	75	21.4405
(((((((...........)))).)))	chr7:100734825-100735060(+)$1	1	15	41	21.7692
((((................))))))	chr8:124221611-124221883(+)$1	1	39	65	19.8138
((((((..............))))))	chr14:21484899-21485178(-)$1	1	214	240	22.1947
.((((((...........))))))..	chr2:37429825-37430076(+)$1	1	147	173	23.0535
(((((..............)))))).	chr16:31502018-31502267(-)$1	1	29	55	21.1340
(((((((...........))).))))	chr19:49416642-49416853(+)$1	1	38	64	22.3103
((..((((...........))))..)	chr15:35271727-35271958(-)$1	1	170	196	21.9332
((..((................)).)	chr17:17714967-17715211(-)$1	1	75	101	19.3653
.(((.((.............)))))(	chr19:41246784-41247068(-)$1	1	77	103	21.3539
((.((((.............)))).)	chr19:45911699-45911976(-)$1	1	215	241	23.2360
(..((((.............)))).)	chr3:184063071-184063341(+)$1	1	167	193	23.7124
((((((.............))))))(	chr1:15987653-15987909(+)$1	1	185	211	23.4728
((((.((.............)).)))	chr1:36826772-36827002(-)$1	1	194	220	22.7345
..(((((...........))))).((	chr19:868106-868417(-)$1	1	265	291	19.5848
..(((((............)))))..	chr1:203800686-203800904(+)$1	1	111	137	22.7439
))).(((.............))).))	chr12:120534228-120534480(-)$1	1	155	181	20.8289
((.((((.............)))).)	chr1:228680713-228680932(+)$1	1	129	155	23.5814
(.((((((...........)))))).	chr14:104177277-104177591(-)$1	1	96	122	19.9010
)((((((............)))))).	chr7:72397248-72397547(+)$1	1	205	231	21.9653
.((((((............)))))))	chr1:16202596-16202873(+)$1	1	236	262	23.2477
...((((...........))))))..	chr7:1037282-1037534(-)$1	1	101	127	22.7312
(((((((..............)))))	chr11:46678552-46678785(+)$1	1	131	157	19.1049
..(((..............)))...)	chr6:32948023-32948240(+)$1	1	184	210	22.2406
..((.(((...........))))).)	chr19:49377034-49377287(+)$1	1	42	68	22.2120
.(((((.............)))))))	chr1:32374447-32374661(-)$1	1	84	110	23.3180
.(((((.............)))))..	chr21:39528305-39528592(+)$1	1	224	250	21.3469
(((((((.............))))))	chr7:149576620-149576874(+)$1	1	206	232	23.5184
...((((............))))...	chr17:73823503-73823823(-)$1	1	258	284	24.2443
(...((((...........))))...	chr1:156713888-156714110(-)$1	1	7	33	22.7118
(((.((((...........))))...	chr17:44171850-44172163(-)$1	1	130	156	22.4824
(((.(((............)))))).	chr17:75212501-75212767(+)$1	1	142	168	23.7367
..(((((............)))))..	chr1:203800704-203800954(+)$1	1	93	119	22.7439
((((.((..............)).))	chr1:11849143-11849437(-)$1	1	85	111	21.0083
((.((((.............)))).)	chr1:228680742-228681015(+)$1	1	100	126	23.5814
(((((((............)))))..	chr11:118916398-118916629(-)$1	1	185	211	24.0337
.((((((...........))))))))	chr16:31501703-31501970(-)$1	1	59	85	22.7848
(((((((............)))))..	chr17:61510614-61510895(-)$1	1	171	197	23.5968
(....(((...........)))...)	chr16:74485858-74486142(-)$1	1	133	159	22.5265
.(((((.............))))).)	chr16:29822214-29822494(+)$1	1	182	208	23.9020
((((.((............)))))))	chr8:103848404-103848687(-)$1	1	71	97	22.8578
(((((..............)))))).	chr20:3765559-3765886(-)$1	1	134	160	21.1340
((((((.............)))))))	chr1:246078731-246079043(-)$1	1	23	49	23.4398
..(((((...........))).))..	chr14:23528238-23528499(-)$1	1	192	218	21.8613
(.(((((............)))))))	chr19:3121237-3121477(+)$1	1	114	140	23.4200

#PSSM
d : 0.19	! : 0.09	f : 0.09	e : 0.09	c : 0.07	" : 0.07	# : 0.06	[ : 0.04	: : 0.04	i : 0.03	g : 0.03	% : 0.01	G : 0.01	= : 0.01	$ : 0.01	b : 0.01	C : 0.01	I : 0.01	' : 0.01	h : 0.01	
f : 0.23	d : 0.17	e : 0.12	c : 0.07	! : 0.06	" : 0.06	# : 0.06	i : 0.03	b : 0.03	g : 0.03	: : 0.03	= : 0.01	$ : 0.01	h : 0.01	[ : 0.01	
f : 0.25	e : 0.20	d : 0.09	[ : 0.07	c : 0.07	b : 0.04	" : 0.04	! : 0.04	i : 0.03	g : 0.03	# : 0.03	= : 0.01	$ : 0.01	h : 0.01	
f : 0.25	e : 0.20	d : 0.19	c : 0.06	! : 0.04	[ : 0.04	i : 0.03	g : 0.03	b : 0.03	= : 0.01	$ : 0.01	: : 0.01	h : 0.01	" : 0.01	# : 0.01	
f : 0.22	d : 0.20	e : 0.17	c : 0.14	[ : 0.09	i : 0.03	g : 0.03	! : 0.01	= : 0.01	y : 0.01	b : 0.01	h : 0.01	# : 0.01	
d : 0.20	f : 0.19	e : 0.17	c : 0.14	b : 0.12	w : 0.04	i : 0.03	g : 0.03	= : 0.01	y : 0.01	h : 0.01	
d : 0.20	f : 0.17	b : 0.12	c : 0.12	e : 0.11	v : 0.09	w : 0.06	i : 0.03	y : 0.03	= : 0.01	h : 0.01	
v : 0.26	u : 0.25	t : 0.22	w : 0.11	d : 0.04	y : 0.03	c : 0.03	b : 0.01	f : 0.01	
t : 0.33	v : 0.26	u : 0.25	w : 0.11	y : 0.03	
t : 0.33	v : 0.26	u : 0.25	w : 0.11	y : 0.03	
t : 0.33	v : 0.26	u : 0.25	w : 0.11	y : 0.03	
t : 0.33	v : 0.26	u : 0.25	w : 0.11	y : 0.03	
t : 0.33	v : 0.26	u : 0.25	w : 0.11	y : 0.03	
t : 0.33	v : 0.26	u : 0.25	w : 0.11	y : 0.03	
t : 0.33	v : 0.26	u : 0.25	w : 0.11	y : 0.03	
t : 0.33	v : 0.26	u : 0.25	w : 0.11	y : 0.03	
t : 0.33	v : 0.26	u : 0.25	w : 0.11	y : 0.03	
t : 0.33	v : 0.26	u : 0.25	w : 0.11	y : 0.03	
v : 0.26	u : 0.25	t : 0.11	w : 0.11	f : 0.07	d : 0.04	c : 0.04	e : 0.03	y : 0.03	b : 0.01	
f : 0.19	e : 0.17	v : 0.17	d : 0.12	c : 0.12	b : 0.07	w : 0.06	y : 0.03	= : 0.01	g : 0.01	
f : 0.23	d : 0.19	e : 0.17	c : 0.14	b : 0.09	w : 0.04	i : 0.03	g : 0.03	] : 0.01	= : 0.01	y : 0.01	
f : 0.23	d : 0.23	e : 0.19	c : 0.09	] : 0.07	b : 0.04	i : 0.03	g : 0.03	= : 0.01	y : 0.01	h : 0.01	
f : 0.25	d : 0.22	e : 0.19	c : 0.07	b : 0.07	] : 0.04	i : 0.03	g : 0.03	3 : 0.03	= : 0.01	h : 0.01	
f : 0.25	e : 0.17	d : 0.15	3 : 0.09	b : 0.07	c : 0.06	i : 0.03	2 : 0.03	g : 0.03	: : 0.03	= : 0.01	h : 0.01	] : 0.01	
f : 0.19	] : 0.14	3 : 0.12	d : 0.11	2 : 0.07	c : 0.06	g : 0.04	b : 0.04	e : 0.04	i : 0.03	5 : 0.03	= : 0.01	G : 0.01	h : 0.01	: : 0.01	6 : 0.01	
d : 0.12	f : 0.09	: : 0.09	3 : 0.09	e : 0.09	b : 0.09	g : 0.06	2 : 0.06	] : 0.04	c : 0.04	i : 0.03	5 : 0.03	a : 0.01	= : 0.01	C : 0.01	E : 0.01	G : 0.01	h : 0.01	6 : 0.01	

#score	1416.3150823930114
#seq	63
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_CDS_m2_run2.txt

#BEAR
%%eeeeeqqqqqqqqeeeee6	chr1:84967507-84967728(-)$1	221	168	189	12.6426
b[eeeeeqqqqqqqqeeeeeb	chr8:38065106-38065330(+)$1	224	96	117	13.8523
$ffffffqqqqqqqqffffff	chr19:42796730-42797022(+)$1	292	146	167	14.0280
gggggggqqqqqqqqgggggg	chr9:114994369-114994617(-)$1	248	33	54	14.3321
ddd!!bbqqqqqqqqbb22dd	chr19:15350720-15350933(-)$1	213	48	69	13.9067
d[eeeeeqqqqqqqqeeeee]	chr16:68156550-68156825(+)$1	275	122	143	14.1317
a[bb[bbqqqqqqqqbbbbaa	chr16:30673928-30674241(+)$1	313	27	48	13.5195
[bb!!bbqqqqqqqqbb]bbb	chr6:33271974-33272238(-)$1	264	97	118	13.5215
dddd[bbqqqqqqqqbb]ddd	chr9:127911820-127912094(-)$1	274	15	36	14.0188
fff[cccqqqqqqqqcccfff	chr12:51634630-51634893(+)$1	263	188	209	14.6915
""eeeeeqqqqqqqqeeeee3	chr16:30078457-30078676(+)$1	219	15	36	14.2993
[ddddbbqqqqqqqqbb]ddd	chr16:1374630-1374871(+)$1	241	149	170	14.0639
Dffffffqqqqqqqqffffff	chr22:38247291-38247567(+)$1	276	58	79	13.3758
gggggggqqqqqqqqgggggg	chr12:110765515-110765740(+)$1	225	186	207	14.3321
b[bb[bbqqqqqqqqbb]bb]	chr16:24942014-24942307(-)$1	293	83	104	13.4861
c[eeeeeqqqqqqqqeeeeec	chr18:55233578-55233853(-)$1	275	129	150	14.2210
dd"""bbqqqqqqqqbb333d	chr16:30676582-30676809(+)$1	227	141	162	14.7298
cffffffqqqqqqqqffffff	chr4:119666016-119666274(-)$1	258	164	185	14.1188
ggggg[aqqqqqqqqa]gggg	chr17:80529612-80529846(+)$1	234	146	167	14.1406
[a!!cccqqqqqqqqcccaff	chr16:28834506-28834740(+)$1	234	164	185	15.1980
gg[ddddqqqqqqqqdddd22	chr6:33169784-33170002(+)$1	218	182	203	13.9974
"""ddddqqqqqqqqdddd]c	chr8:145066103-145066341(+)$1	238	193	214	14.6442
gggggggqqqqqqqqgggggg	chr20:42338532-42338755(+)$1	223	193	214	14.3321
hh!!cccqqqqqqqqccchhh	chr3:23960828-23961085(+)$1	257	15	36	14.0011
gggggggqqqqqqqqgggggg	chr12:27152416-27152710(-)$1	294	143	164	14.3321
c[eeeeeqqqqqqqqeeeee]	chr3:184033886-184034107(+)$1	221	156	177	14.2168
ccc[cccqqqqqqqqccc]cc	chr1:160261024-160261283(-)$1	259	74	95	14.9974
dffffffqqqqqqqqffffff	chr12:57108052-57108266(-)$1	214	169	190	14.0337
####cccqqqqqqqqccc22=	chr14:100809560-100809823(-)$1	263	32	53	15.0627
:ddddbbqqqqqqqqbb]ddd	chr9:134073764-134074032(+)$1	268	207	228	13.2857
c####bbqqqqqqqqbb4444	chr17:30696310-30696566(+)$1	256	130	151	14.8082
$$$$$bbqqqqqqqqbb333c	chr3:13360530-13360754(-)$1	224	57	78	14.1263
ddd[cccqqqqqqqqcccddd	chr1:154241191-154241461(+)$1	270	94	115	14.4867
:ffffffqqqqqqqqffffff	chr6:35437899-35438158(+)$1	259	186	207	13.3683
cc[ddddqqqqqqqqdddd]c	chr20:55982644-55982901(+)$1	257	32	53	14.4476
ddd[cccqqqqqqqqccc]dd	chr3:47632093-47632359(-)$1	266	45	66	14.5559
ff[ddddqqqqqqqqdddd]f	chr12:7045372-7045608(+)$1	236	47	68	14.1956
ee"""bbqqqqqqqqbb22ee	chr3:47629615-47629892(-)$1	277	252	273	14.1138
cc[ddddqqqqqqqqdddd]c	chr15:57524862-57525132(+)$1	270	30	51	14.4476
g[bb[bbqqqqqqqqbbbbgg	chr5:78919000-78919274(+)$1	274	219	240	13.5067
:ffffffqqqqqqqqffffff	chr16:31104574-31104841(-)$1	267	129	150	13.3683
cccddddqqqqqqqqdddd]c	chr17:29654621-29654887(+)$1	266	56	77	14.2096
e!!ddddqqqqqqqqddddee	chr11:64679287-64679549(-)$1	262	232	253	14.2646
ddddcccqqqqqqqqccc666	chr22:30734676-30734955(-)$1	279	66	87	13.3522
"""ddddqqqqqqqqddddff	chr12:57108045-57108252(-)$1	207	168	189	14.5395
Dffffffqqqqqqqqffffff	chr14:102375837-102376085(+)$1	248	221	242	13.3758
dd"""bbqqqqqqqqbb333d	chr16:30676609-30676823(+)$1	214	114	135	14.7298
dd[ddddqqqqqqqqdddd88	chr11:71152222-71152470(-)$1	248	67	88	13.4667
eee[cccqqqqqqqqccceee	chr19:3061071-3061326(-)$1	255	203	224	14.6437
cceeeeeqqqqqqqqeeeee:	chr1:19525265-19525509(-)$1	244	136	157	13.1321
"ffffffqqqqqqqqffffff	chr2:27439632-27439937(+)$1	305	189	210	14.2265
bb!!cccqqqqqqqqccc22b	chr14:100808673-100808906(-)$1	233	156	177	14.4773
bbeeeeeqqqqqqqqeeeee:	chr17:65082890-65083146(-)$1	256	48	69	12.7462
ee!!cccqqqqqqqqccc444	chr1:108697531-108697802(-)$1	271	48	69	15.1170
!!ccc[aqqqqqqqqa]ccc2	chr22:20939077-20939358(+)$1	281	39	60	14.1628
eeeeebbqqqqqqqqbb]eee	chr12:57626144-57626456(+)$1	312	187	208	14.0930
####cccqqqqqqqqccc444	chr1:171526451-171526822(+)$1	371	250	271	15.3595
b[a[cccqqqqqqqqccc]ab	chr18:9102692-9102895(+)$1	203	158	179	14.8435
bb[ddddqqqqqqqqddddbb	chr22:20937085-20937323(+)$1	238	135	156	13.4643
!ccccccqqqqqqqqccc]cc	chr11:85707767-85708045(-)$1	278	145	166	14.9030
ee[ddddqqqqqqqqddddee	chr8:99053910-99054136(-)$1	226	152	173	14.0185
:ffffffqqqqqqqqffffff	chr12:49433757-49434042(-)$1	285	60	81	13.3683
Fffffffqqqqqqqqffffff	chr10:17756560-17756869(+)$1	309	272	293	13.6842
#ddddbbqqqqqqqqbb]ddd	chr5:139908001-139908304(+)$1	303	261	282	14.1181
####cccqqqqqqqqccc22d	chr14:55529298-55529548(+)$1	250	221	242	14.9686

#otherMatches

#Seq PSSM
UUCAGACCCCAGAAAGUCUGU	chr1:84967507-84967728(-)$1	221	168	189	12.6426
UCGUUGGAUCUAUCCCCAGCA	chr8:38065106-38065330(+)$1	224	96	117	13.8523
CCCAGGCCCCCCCAAGCCUGG	chr19:42796730-42797022(+)$1	292	146	167	14.0280
AAUUGUAUCAAGUGUUACAGU	chr9:114994369-114994617(-)$1	248	33	54	14.3321
GGCCAGCAGUUCUAAGCCAGC	chr19:15350720-15350933(-)$1	213	48	69	13.9067
CACCUGGUCACUCCCCCAGGG	chr16:68156550-68156825(+)$1	275	122	143	14.1317
GCGGAGCCAAGAACAGCCCCC	chr16:30673928-30674241(+)$1	313	27	48	13.5195
CUGUCGAAUUCACCAUCCCAG	chr6:33271974-33272238(-)$1	264	97	118	13.5215
GUUGUGGAAAUAUUGCUUCGA	chr9:127911820-127912094(-)$1	274	15	36	14.0188
ACCUGGCUCCACAGUGCUGGU	chr12:51634630-51634893(+)$1	263	188	209	14.6915
CUCCAGGAGAGGGGCCCUGGU	chr16:30078457-30078676(+)$1	219	15	36	14.2993
UUUGCGCCCUCAUAAGCAGCG	chr16:1374630-1374871(+)$1	241	149	170	14.0639
CUGAGGUGAUCAAAAACUUCA	chr22:38247291-38247567(+)$1	276	58	79	13.3758
AAUGGCAAAGAAAAAUGCCAU	chr12:110765515-110765740(+)$1	225	186	207	14.3321
CAGUACCAAAGCCAAGGAACC	chr16:24942014-24942307(-)$1	293	83	104	13.4861
GCUAUUGCUUUCACACAGUAU	chr18:55233578-55233853(-)$1	275	129	150	14.2210
UGAGCUCCCAAUCCAGACACC	chr16:30676582-30676809(+)$1	227	141	162	14.7298
GACAAAGAGAAGGUACUUUGU	chr4:119666016-119666274(-)$1	258	164	185	14.1188
AGUUUGUUGUUAAAUAGAGGC	chr17:80529612-80529846(+)$1	234	146	167	14.1406
ACCAGCCCUCCCAACGGCGGC	chr16:28834506-28834740(+)$1	234	164	185	15.1980
UCACCUCCCGCACUUGAGGAG	chr6:33169784-33170002(+)$1	218	182	203	13.9974
CACGCCCACUCUUCCGGGCCU	chr8:145066103-145066341(+)$1	238	193	214	14.6442
GGAUCUCUGCACAGUGGGAUC	chr20:42338532-42338755(+)$1	223	193	214	14.3321
ACAAGCACAGGGAGAUGCGUG	chr3:23960828-23961085(+)$1	257	15	36	14.0011
CUGGUUUUCAUCCUUAGACCA	chr12:27152416-27152710(-)$1	294	143	164	14.3321
UGGGAGCAGUGGAAAGCUUUG	chr3:184033886-184034107(+)$1	221	156	177	14.2168
CUUCAAGCUCAAGAACUUCAA	chr1:160261024-160261283(-)$1	259	74	95	14.9974
AGUGGAACUGuuuauuuccau	chr12:57108052-57108266(-)$1	214	169	190	14.0337
AUUCCUUUAUUAACUAAGCAG	chr14:100809560-100809823(-)$1	263	32	53	15.0627
AGCUGCCACACCACAGGUCAG	chr9:134073764-134074032(+)$1	268	207	228	13.2857
AACAAGGAAUGAGACCCCCAA	chr17:30696310-30696566(+)$1	256	130	151	14.8082
CCCCUGCCCCGACCUGCUCUA	chr3:13360530-13360754(-)$1	224	57	78	14.1263
CUUGCCUUCAGCCCUAGGAAG	chr1:154241191-154241461(+)$1	270	94	115	14.4867
AGUGGAUGAGGUGAAGUCCAC	chr6:35437899-35438158(+)$1	259	186	207	13.3683
GUCCUCGCCCUACAUUGAGUA	chr20:55982644-55982901(+)$1	257	32	53	14.4476
CCCAGGUUCCAUGAUGCCCGG	chr3:47632093-47632359(-)$1	266	45	66	14.5559
CUCUCCCCACGCCAUGGGACA	chr12:7045372-7045608(+)$1	236	47	68	14.1956
GACUUGUGUUCCUCAACUUUC	chr3:47629615-47629892(-)$1	277	252	273	14.1138
UAUCUCUUUCCAUCUAGAGUU	chr15:57524862-57525132(+)$1	270	30	51	14.4476
UAUGUACCAGAUAUAGUCAGA	chr5:78919000-78919274(+)$1	274	219	240	13.5067
UGUGCUGGGACAGGACAGCAU	chr16:31104574-31104841(-)$1	267	129	150	13.3683
CACCUUCAUGCACCAGGAGUG	chr17:29654621-29654887(+)$1	266	56	77	14.2096
GCUGGUGAGUUGGAGCACCCU	chr11:64679287-64679549(-)$1	262	232	253	14.2646
GAUUGGCCCCAGCAAGCCCAA	chr22:30734676-30734955(-)$1	279	66	87	13.3522
auuuccauagguuuuugggga	chr12:57108045-57108252(-)$1	207	168	189	14.5395
CAGGAUUUUUUUCUUAAUCCU	chr14:102375837-102376085(+)$1	248	221	242	13.3758
UGAGCUCCCAAUCCAGACACC	chr16:30676609-30676823(+)$1	214	114	135	14.7298
UCCUGGUUCUCGCCCACCAUC	chr11:71152222-71152470(-)$1	248	67	88	13.4667
GAAUGUGAGUCCCCCCAUUUC	chr19:3061071-3061326(-)$1	255	203	224	14.6437
UAGAUAGAACUGAAAUUAUCA	chr1:19525265-19525509(-)$1	244	136	157	13.1321
AUAGGUCUUACCAUUGACCUA	chr2:27439632-27439937(+)$1	305	189	210	14.2265
GCAGAUCAAAACCAAGGUGAG	chr14:100808673-100808906(-)$1	233	156	177	14.4773
CUGGCUCAGUGUAAAGAGCUU	chr17:65082890-65083146(-)$1	256	48	69	12.7462
CACGGUUCAAAAUCAGACAAA	chr1:108697531-108697802(-)$1	271	48	69	15.1170
CUGACCGUGCCCAUCCUGUCU	chr22:20939077-20939358(+)$1	281	39	60	14.1628
CUCAUUGACUACGCCCGCAUG	chr12:57626144-57626456(+)$1	312	187	208	14.0930
cucagcuucaguuccagccuc	chr1:171526451-171526822(+)$1	371	250	271	15.3595
GUCUCCCUUAGUUUUGGGCGC	chr18:9102692-9102895(+)$1	203	158	179	14.8435
AGUGUCCCCUCACCUGGACCU	chr22:20937085-20937323(+)$1	238	135	156	13.4643
AACUGCUUCUCAGGUAGCAAG	chr11:85707767-85708045(-)$1	278	145	166	14.9030
AAAUUUUCCUUUAAUAAAAUU	chr8:99053910-99054136(-)$1	226	152	173	14.0185
CGGGUGCAUUUGUGGGCACCC	chr12:49433757-49434042(-)$1	285	60	81	13.3683
AUGAGAUUCAUUACUAUCUUA	chr10:17756560-17756869(+)$1	309	272	293	13.6842
GCCGUCUACCUAACCAGAACG	chr5:139908001-139908304(+)$1	303	261	282	14.1181
CAACAGGAAUGUAUCCCUCCG	chr14:55529298-55529548(+)$1	250	221	242	14.9686

#DB
..(((((........))))).	chr1:84967507-84967728(-)$1	1	168	189	12.6426
(.(((((........))))))	chr8:38065106-38065330(+)$1	1	96	117	13.8523
.((((((........))))))	chr19:42796730-42797022(+)$1	1	146	167	14.0280
(((((((........))))))	chr9:114994369-114994617(-)$1	1	33	54	14.3321
(((..((........))..))	chr19:15350720-15350933(-)$1	1	48	69	13.9067
(.(((((........))))).	chr16:68156550-68156825(+)$1	1	122	143	14.1317
(.((.((........))))))	chr16:30673928-30674241(+)$1	1	27	48	13.5195
.((..((........)).)))	chr6:33271974-33272238(-)$1	1	97	118	13.5215
((((.((........)).)))	chr9:127911820-127912094(-)$1	1	15	36	14.0188
(((.(((........))))))	chr12:51634630-51634893(+)$1	1	188	209	14.6915
..(((((........))))).	chr16:30078457-30078676(+)$1	1	15	36	14.2993
.((((((........)).)))	chr16:1374630-1374871(+)$1	1	149	170	14.0639
(((((((........))))))	chr22:38247291-38247567(+)$1	1	58	79	13.3758
(((((((........))))))	chr12:110765515-110765740(+)$1	1	186	207	14.3321
(.((.((........)).)).	chr16:24942014-24942307(-)$1	1	83	104	13.4861
(.(((((........))))))	chr18:55233578-55233853(-)$1	1	129	150	14.2210
((...((........))...)	chr16:30676582-30676809(+)$1	1	141	162	14.7298
)((((((........))))))	chr4:119666016-119666274(-)$1	1	164	185	14.1188
(((((.(........).))))	chr17:80529612-80529846(+)$1	1	146	167	14.1406
.(..(((........))))))	chr16:28834506-28834740(+)$1	1	164	185	15.1980
((.((((........))))..	chr6:33169784-33170002(+)$1	1	182	203	13.9974
...((((........)))).)	chr8:145066103-145066341(+)$1	1	193	214	14.6442
(((((((........))))))	chr20:42338532-42338755(+)$1	1	193	214	14.3321
((..(((........))))))	chr3:23960828-23961085(+)$1	1	15	36	14.0011
(((((((........))))))	chr12:27152416-27152710(-)$1	1	143	164	14.3321
(.(((((........))))).	chr3:184033886-184034107(+)$1	1	156	177	14.2168
(((.(((........))).))	chr1:160261024-160261283(-)$1	1	74	95	14.9974
(((((((........))))))	chr12:57108052-57108266(-)$1	1	169	190	14.0337
....(((........)))..)	chr14:100809560-100809823(-)$1	1	32	53	15.0627
.((((((........)).)))	chr9:134073764-134074032(+)$1	1	207	228	13.2857
(....((........))....	chr17:30696310-30696566(+)$1	1	130	151	14.8082
.....((........))...)	chr3:13360530-13360754(-)$1	1	57	78	14.1263
(((.(((........))))))	chr1:154241191-154241461(+)$1	1	94	115	14.4867
.((((((........))))))	chr6:35437899-35438158(+)$1	1	186	207	13.3683
((.((((........)))).)	chr20:55982644-55982901(+)$1	1	32	53	14.4476
(((.(((........))).))	chr3:47632093-47632359(-)$1	1	45	66	14.5559
((.((((........)))).)	chr12:7045372-7045608(+)$1	1	47	68	14.1956
((...((........))..))	chr3:47629615-47629892(-)$1	1	252	273	14.1138
((.((((........)))).)	chr15:57524862-57525132(+)$1	1	30	51	14.4476
(.((.((........))))))	chr5:78919000-78919274(+)$1	1	219	240	13.5067
.((((((........))))))	chr16:31104574-31104841(-)$1	1	129	150	13.3683
(((((((........)))).)	chr17:29654621-29654887(+)$1	1	56	77	14.2096
(..((((........))))))	chr11:64679287-64679549(-)$1	1	232	253	14.2646
(((((((........)))...	chr22:30734676-30734955(-)$1	1	66	87	13.3522
...((((........))))))	chr12:57108045-57108252(-)$1	1	168	189	14.5395
)((((((........))))))	chr14:102375837-102376085(+)$1	1	221	242	13.3758
((...((........))...)	chr16:30676609-30676823(+)$1	1	114	135	14.7298
((.((((........))))..	chr11:71152222-71152470(-)$1	1	67	88	13.4667
(((.(((........))))))	chr19:3061071-3061326(-)$1	1	203	224	14.6437
))(((((........))))).	chr1:19525265-19525509(-)$1	1	136	157	13.1321
.((((((........))))))	chr2:27439632-27439937(+)$1	1	189	210	14.2265
((..(((........)))..)	chr14:100808673-100808906(-)$1	1	156	177	14.4773
))(((((........))))).	chr17:65082890-65083146(-)$1	1	48	69	12.7462
((..(((........)))...	chr1:108697531-108697802(-)$1	1	48	69	15.1170
..(((.(........).))).	chr22:20939077-20939358(+)$1	1	39	60	14.1628
(((((((........)).)))	chr12:57626144-57626456(+)$1	1	187	208	14.0930
....(((........)))...	chr1:171526451-171526822(+)$1	1	250	271	15.3595
(.(.(((........))).))	chr18:9102692-9102895(+)$1	1	158	179	14.8435
((.((((........))))))	chr22:20937085-20937323(+)$1	1	135	156	13.4643
.((((((........))).))	chr11:85707767-85708045(-)$1	1	145	166	14.9030
((.((((........))))))	chr8:99053910-99054136(-)$1	1	152	173	14.0185
.((((((........))))))	chr12:49433757-49434042(-)$1	1	60	81	13.3683
)((((((........))))))	chr10:17756560-17756869(+)$1	1	272	293	13.6842
.((((((........)).)))	chr5:139908001-139908304(+)$1	1	261	282	14.1181
....(((........)))..)	chr14:55529298-55529548(+)$1	1	221	242	14.9686

#PSSM
d : 0.15	c : 0.13	g : 0.10	b : 0.09	e : 0.09	" : 0.06	# : 0.06	: : 0.06	[ : 0.04	$ : 0.03	f : 0.03	D : 0.03	! : 0.03	% : 0.01	a : 0.01	h : 0.01	F : 0.01	
f : 0.18	d : 0.16	[ : 0.12	g : 0.09	c : 0.09	e : 0.07	b : 0.06	# : 0.06	" : 0.04	! : 0.03	% : 0.01	a : 0.01	h : 0.01	$ : 0.01	
f : 0.16	e : 0.15	d : 0.12	[ : 0.10	g : 0.07	" : 0.07	! : 0.07	b : 0.06	c : 0.06	# : 0.06	$ : 0.01	a : 0.01	
d : 0.24	f : 0.15	e : 0.13	! : 0.09	[ : 0.09	g : 0.07	# : 0.06	b : 0.04	" : 0.04	c : 0.03	$ : 0.01	
c : 0.24	d : 0.21	f : 0.15	e : 0.13	g : 0.07	[ : 0.06	" : 0.04	! : 0.03	# : 0.01	$ : 0.01	
b : 0.23	c : 0.23	d : 0.16	f : 0.15	e : 0.12	g : 0.06	[ : 0.03	
b : 0.23	c : 0.23	d : 0.16	f : 0.15	e : 0.12	g : 0.06	a : 0.03	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
b : 0.23	c : 0.23	d : 0.16	f : 0.15	e : 0.12	g : 0.06	a : 0.03	
b : 0.23	c : 0.23	d : 0.16	f : 0.15	e : 0.12	g : 0.06	] : 0.03	
c : 0.24	d : 0.16	f : 0.15	e : 0.12	] : 0.10	g : 0.07	3 : 0.04	2 : 0.03	b : 0.03	4 : 0.01	
d : 0.24	f : 0.16	e : 0.15	g : 0.07	2 : 0.07	b : 0.06	] : 0.06	3 : 0.04	4 : 0.04	a : 0.01	h : 0.01	6 : 0.01	c : 0.01	
e : 0.20	f : 0.20	d : 0.10	g : 0.09	] : 0.07	2 : 0.06	b : 0.04	3 : 0.04	c : 0.04	4 : 0.04	a : 0.03	h : 0.01	6 : 0.01	8 : 0.01	
f : 0.21	d : 0.15	c : 0.12	g : 0.09	b : 0.07	e : 0.07	] : 0.04	4 : 0.04	6 : 0.03	2 : 0.03	: : 0.03	a : 0.01	3 : 0.01	h : 0.01	= : 0.01	8 : 0.01	

#score	918.2063158760676
#seq	65
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_transcript_m2_run1.txt

#BEAR
!eeeee[bbvvvvvvvvvvvvvbb]eeeee4	chr9:139701561-139701805(+)$1	244	81	112	24.0362
::gggggggwwwwwwwwwwwwwwggggggg:	chr14:23528055-23528296(-)$1	241	143	174	21.4050
e!!bbyyyyyyyyyyyyyyyybb22eeeeee	chr20:61468470-61468716(+)$1	246	174	205	20.2977
ee[ffffffuuuuuuuuuuuuffffffeeee	chr20:25206717-25206999(+)$1	282	212	243	25.3672
iii"""bbvvvvvvvvvvvvvbb4444iiii	chr3:197243872-197244167(-)$1	295	133	164	23.9451
dd[fffffftttttttttttffffffdddde	chr19:975723-976019(+)$1	296	120	151	23.8052
[ccc[ddddvvvvvvvvvvvvvdddd]cccf	chr16:30016750-30016999(+)$1	249	179	210	24.4433
ddddfffffftttttttttttffffff4444	chr22:50637650-50638076(+)$1	426	338	369	24.4433
ddddeeeeeuuuuuuuuuuuueeeee]dddd	chr2:63273139-63273417(+)$1	278	207	238	24.0060
dddd[cccvvvvvvvvvvvvvccc]dddd==	chr6:132211741-132212017(+)$1	276	151	182	24.4134
fffffffbbvvvvvvvvvvvvvbb22fffff	chr1:234527060-234527326(-)$1	266	71	102	23.3460
dddd[cccvvvvvvvvvvvvvccc]dddd==	chr6:132211817-132212055(+)$1	238	75	106	24.4134
iii"""ddddtttttttttttdddd333iii	chr1:70716471-70716698(+)$1	227	33	64	24.3168
$$gggggggwwwwwwwwwwwwwwggggggg4	chr20:30152311-30152599(+)$1	288	92	123	23.9984
eeeefffffftttttttttttffffff]eee	chr6:43753967-43754183(+)$1	216	103	134	24.4185
gggg[ddddtttttttttttdddd]gggggg	chr12:6759701-6760043(-)$1	342	262	293	24.2536
!!bb!!ddddtttttttttttdddd22bbff	chr9:131152640-131152898(+)$1	258	150	181	22.8843
!!gggggggwwwwwwwwwwwwwwggggggg]	chr2:70438524-70438732(-)$1	208	124	155	24.5617
ddd"""ddddtttttttttttdddd333ddd	chr5:130977487-130977789(-)$1	302	141	172	23.5541
eeeeeeddddtttttttttttdddd4444ee	chr20:17971514-17971797(+)$1	283	77	108	23.2404
hhhhhhhhvvvvvvvvvvvvvhhhhhhhh33	chr16:67918125-67918344(+)$1	219	21	52	22.1724
ccc[eeeeeuuuuuuuuuuuueeeeeccc]d	chr6:33161303-33161549(-)$1	246	83	114	24.8856
ffffffcccuuuuuuuuuuuuccc]ffffff	chr1:234742452-234742772(-)$1	320	195	226	25.1126
!bb[eeeeeuuuuuuuuuuuueeeee]bb22	chr2:85618351-85618662(+)$1	311	99	130	23.9414
####fffffftttttttttttffffff22ee	chr2:109125308-109125551(+)$1	243	5	36	24.5759
gggggyyyyyyyyyyyyyyyyggggggg]cc	chr1:185266849-185267115(-)$1	266	139	170	22.3425
ff:bb[cccuuuuuuuuuuuucccbbFFFFF	chr2:109101732-109102116(+)$1	384	106	137	21.1513
d!!a[eeeeettttttttttteeeee]a22d	chr1:1227697-1227934(-)$1	237	154	185	23.9966
ccc[dddd[attttttttttta]ddddccc:	chr20:30153371-30153619(+)$1	248	80	111	23.4769
g[ffffffyyyyyyyyyyyyyyyyffffff]	chr3:148890249-148890485(-)$1	236	83	114	22.4815
cc[ffffffuuuuuuuuuuuuffffff]ccc	chr19:18499785-18500050(+)$1	265	153	184	25.8435
!!gggggggwwwwwwwwwwwwwwggggggg]	chr2:70438532-70438737(-)$1	205	129	160	24.5617
eeeee[cccvvvvvvvvvvvvvccceeeee]	chrX:70795448-70795703(+)$1	255	189	220	24.7526
gggffffffuuuuuuuuuuuuffffff]ggg	chr17:8062568-8062846(-)$1	278	165	196	25.8220
[gggggggvvvvvvvvvvvvvggggggg333	chr14:24909146-24909402(-)$1	256	84	115	26.0073
eeeeea[bbvvvvvvvvvvvvvbb]a]eeee	chr12:56710827-56711111(-)$1	284	77	108	23.7020
=========ttttttttttt===========	chr15:34671193-34671445(-)$1	252	115	146	24.8051
#dddd[ccctttttttttttccc22dddd22	chr16:90238306-90238551(+)$1	245	21	52	23.1835
::ggggggguuuuuuuuuuuuggggggg:::	chr20:33515597-33515847(+)$1	250	40	71	21.4445
gg:ffffffwwwwwwwwwwwwwwffffff::	chr16:2652995-2653271(+)$1	276	56	87	20.7683
$$ccc[cccuuuuuuuuuuuuccc]ccc333	chr1:55532031-55532341(-)$1	310	186	217	26.0188
gggggggwwwwwwwwwwwwwwggggggg333	chr12:48366791-48367075(-)$1	284	71	102	24.1439
eeeefffffftttttttttttffffff]eee	chr6:43754043-43754273(+)$1	230	27	58	24.4185
####eeeeeuuuuuuuuuuuueeeeedddd2	chr5:176524772-176525056(+)$1	284	54	85	24.4656
cc"""ddddtttttttttttdddd]ccc]cc	chr2:61413834-61414077(+)$1	243	36	67	23.8687
ccc[dddd[attttttttttta]ddddccc:	chr20:30153285-30153556(+)$1	271	166	197	23.4769
ggggg[bbwwwwwwwwwwwwwwbbggggggg	chr5:179264352-179264634(-)$1	282	71	102	23.4361
ccc!!ddddtttttttttttdddd22ccc]c	chr21:35275684-35275951(-)$1	267	37	68	23.6228
b[gggggggvvvvvvvvvvvvvggggggg]b	chr1:19404368-19404616(-)$1	248	72	103	25.3013
$ccc!!cccyyyyyyyyyyyyyyyyccc333	chr14:39819238-39819544(+)$1	306	109	140	22.5752
dddd!!bb[attttttttttta]bb22dddd	chr19:49611408-49611760(+)$1	352	96	127	23.2346
%%a[fffffftttttttttttffffffahhh	chrY:15032050-15032337(+)$1	287	101	132	23.2178
b[gggggggtttttttttttggggggg]bb]	chr5:137891348-137891625(-)$1	277	45	76	24.1317
cc[ffffffuuuuuuuuuuuuffffff]ccc	chr2:178087909-178088142(+)$1	233	60	91	25.8435
dd"""dddduuuuuuuuuuuudddd22dddd	chr14:50249610-50249935(+)$1	325	55	86	23.8929
"""gggggggtttttttttttggggggg]cc	chrX:132669805-132670033(-)$1	228	129	160	25.2807
cc[gggggggtttttttttttggggggg]cc	chr2:241818172-241818446(+)$1	274	188	219	25.1816
fffffffffuuuuuuuuuuuuffffff4444	chr7:158428780-158429112(-)$1	332	151	182	25.3572
!!ccc[ccctttttttttttcccccc22eee	chr20:31026624-31026864(+)$1	240	96	127	24.5326
h[ffffffvvvvvvvvvvvvvffffffhhhh	chr20:45838042-45838345(-)$1	303	38	69	24.1931

#otherMatches

#Seq PSSM
guaccugcaggacuuuaauugauggagguga	chr9:139701561-139701805(+)$1	244	81	112	24.0362
UCCCUCUCAUUUCCCAUUAAGUCUGAGAGGC	chr14:23528055-23528296(-)$1	241	143	174	21.4050
ACCCUGCUGUAAAAAUCCCUGAGACUGACUU	chr20:61468470-61468716(+)$1	246	174	205	20.2977
AUGAGCUGCUGUAAACUAUUUGUGGCUGUGC	chr20:25206717-25206999(+)$1	282	212	243	25.3672
AGUGAGUGAGACAAACAGACCCAGGAGGCUU	chr3:197243872-197244167(-)$1	295	133	164	23.9451
GUAUUUAAACUUCAGAAAUAUUUAAGACGAU	chr19:975723-976019(+)$1	296	120	151	23.8052
UGGCAGGGGCCCUGCCUUCAAACCCCGGCCC	chr16:30016750-30016999(+)$1	249	179	210	24.4433
UUCCUUAGAAACUGAAAUAAAUUCUAAUUUU	chr22:50637650-50638076(+)$1	426	338	369	24.4433
AUCCGAGAAUACACCAUCUUUUUCUCUGGAU	chr2:63273139-63273417(+)$1	278	207	238	24.0060
AAAGACAGACCACACCUAAAACUGCCUUUCU	chr6:132211741-132212017(+)$1	276	151	182	24.4134
AACAGAUUCUGAAAUUUAUUGUGAUAAUUUG	chr1:234527060-234527326(-)$1	266	71	102	23.3460
AAAGACAGACCACACCUAAAACUGCCUUUCU	chr6:132211817-132212055(+)$1	238	75	106	24.4134
AGUCCAACUGUAUACCUGCAUCAGUGUCAUU	chr1:70716471-70716698(+)$1	227	33	64	24.3168
UGCUGUGAGGGAAAUUAGAGGGACUUACAGA	chr20:30152311-30152599(+)$1	288	92	123	23.9984
GGGAAAAGAUAUUAACAUCACGUCUUUGUCU	chr6:43753967-43754183(+)$1	216	103	134	24.4185
AGGUAAAUAAAAGCUAUACAUGUUGGCCUGC	chr12:6759701-6760043(-)$1	342	262	293	24.2536
CCUCCUCCACAACUGAAUAUAGUGGCUGAAA	chr9:131152640-131152898(+)$1	258	150	181	22.8843
AGCUGGGCAAAGCAUCUUUUAAAUGUUCAGA	chr2:70438524-70438732(-)$1	208	124	155	24.5617
AGAUUUUGUUUUGUUCCAAUUGGCAUACUCU	chr5:130977487-130977789(-)$1	302	141	172	23.5541
UGGGUUUGGGAAACUUAAAUGCCCAUUACAG	chr20:17971514-17971797(+)$1	283	77	108	23.2404
GGCCCCCAUCUCUGGGGUGUUUGGGGGUCAG	chr16:67918125-67918344(+)$1	219	21	52	22.1724
UGCUGGGGCUGCAUGAUUUUUGCCCUGCGUC	chr6:33161303-33161549(-)$1	246	83	114	24.8856
GCAAAUCAGAAAUGCUUCUAGCUGUAUUUGU	chr1:234742452-234742772(-)$1	320	195	226	25.1126
GGCAGCCAGAAUUCUGACUCCCUGGCAGCAG	chr2:85618351-85618662(+)$1	311	99	130	23.9414
CUCUCUGAAGUUCUCUUAAGCCUUCAGUUUA	chr2:109125308-109125551(+)$1	243	5	36	24.5759
GGUCUGUUUUGUGUACUUUUAAGACUUUGGU	chr1:185266849-185267115(-)$1	266	139	170	22.3425
UUAAGUACCUUGCUGUUUCCUGGUCUGGGUU	chr2:109101732-109102116(+)$1	384	106	137	21.1513
CUUGCGCCCACUGCCUGCUCCUGGGCUCCCG	chr1:1227697-1227934(-)$1	237	154	185	23.9966
GAACAGGGUCUUAGUAUAACCGUCCUUUUCU	chr20:30153371-30153619(+)$1	248	80	111	23.4769
GCAUACUUGUAAAAUGUUUCCUUAAAGUGUU	chr3:148890249-148890485(-)$1	236	83	114	22.4815
GUAUUUAUUUAAAACUCUGGUGAUAAAAAUA	chr19:18499785-18500050(+)$1	265	153	184	25.8435
AGCUGGGCAAAGCAUCUUUUAAAUGUUCAGA	chr2:70438532-70438737(-)$1	205	129	160	24.5617
UUUCUAUUGUACUCUGCUUUAUCAAAGAAGU	chrX:70795448-70795703(+)$1	255	189	220	24.7526
CCCCCACACUUCUGGUUUUCUGUGUGGAGGG	chr17:8062568-8062846(-)$1	278	165	196	25.8220
GGGGCUGCCUUAAAGGAAAUUGUAGCCUAAG	chr14:24909146-24909402(-)$1	256	84	115	26.0073
UGGACAGUGACAGAGGAUACCACAGUAGUUC	chr12:56710827-56711111(-)$1	284	77	108	23.7020
UGGCAUUAUUGACUGCUGAUGUGAUGCUACU	chr15:34671193-34671445(-)$1	252	115	146	24.8051
CAGGCCCCGUUUUUCCCUUCCGGCAGCCUCU	chr16:90238306-90238551(+)$1	245	21	52	23.1835
CCUCUGUUCCCACCCUCCCCUGAACAGAACC	chr20:33515597-33515847(+)$1	250	40	71	21.4445
AGUGAUUUAAUCAUAUAAUUUAAUGAAUCUG	chr16:2652995-2653271(+)$1	276	56	87	20.7683
AUCUUGUUUAUAAAAUUUCAAAAGGAAGUAG	chr1:55532031-55532341(-)$1	310	186	217	26.0188
AAAUAAAAUCUCGGUGUUCUAUUUAUUUAUU	chr12:48366791-48367075(-)$1	284	71	102	24.1439
GGGAAAAGAUAUUAACAUCACGUCUUUGUCU	chr6:43754043-43754273(+)$1	230	27	58	24.4185
AGCUGCCGUGCCUGUGUCCUGAUGGCCCAAA	chr5:176524772-176525056(+)$1	284	54	85	24.4656
CAUUUUGAAGAAAUAAAAGGUUCACUGCAGC	chr2:61413834-61414077(+)$1	243	36	67	23.8687
GAACAGGGUCUUAGUAUAACCGUCCUUUUCU	chr20:30153285-30153556(+)$1	271	166	197	23.4769
GGGCCACACACCCCGUCACAUCUGGGUCUGA	chr5:179264352-179264634(-)$1	282	71	102	23.4361
UGUGCGCAUUGGCGAGAAAUAUGUUGACAUG	chr21:35275684-35275951(-)$1	267	37	68	23.6228
GUGAAGGACUAUUCCGCUUACCGUUCUUCCC	chr1:19404368-19404616(-)$1	248	72	103	25.3013
AAGACCUGGAUUUUUCCCCCCACCCCCACAU	chr14:39819238-39819544(+)$1	306	109	140	22.5752
ccgugaccgcgagcacaaacggggggagcgg	chr19:49611408-49611760(+)$1	352	96	127	23.2346
CAGUGAUUGUCUGGUAUAUUUACAGUCCUCA	chrY:15032050-15032337(+)$1	287	101	132	23.2178
GACCAUUAGCUAGUGAUCAUUUAAUGGACAG	chr5:137891348-137891625(-)$1	277	45	76	24.1317
UUCCUUCACAACAUGGUUUUAGUGAAGCAAA	chr2:178087909-178088142(+)$1	233	60	91	25.8435
UCUUAAGGCUUCAUAAAUAAUGCCUAUGAUC	chr14:50249610-50249935(+)$1	325	55	86	23.8929
UGUGCCAAAUUAUUCUCCUAUGUUUGGCUGC	chrX:132669805-132670033(-)$1	228	129	160	25.2807
CCCGGGAGGCAGAACCAGGCAGCCUCCCUGG	chr2:241818172-241818446(+)$1	274	188	219	25.1816
CAGGCUAACUACUUGAAUUAUGUUAGUUACA	chr7:158428780-158429112(-)$1	332	151	182	25.3572
UAUCUUGUAUUUCGACUUAUUACAGAGUUGA	chr20:31026624-31026864(+)$1	240	96	127	24.5326
UAUGUAUAUGAGAAAAUUAAUUGUACGAUAU	chr20:45838042-45838345(-)$1	303	38	69	24.1931

#DB
.(((((.((.............)).))))).	chr9:139701561-139701805(+)$1	1	81	112	24.0362
..(((((((..............))))))).	chr14:23528055-23528296(-)$1	1	143	174	21.4050
(..((................))..))))))	chr20:61468470-61468716(+)$1	1	174	205	20.2977
((.((((((............))))))))))	chr20:25206717-25206999(+)$1	1	212	243	25.3672
(((...((.............))....))))	chr3:197243872-197244167(-)$1	1	133	164	23.9451
((.((((((...........)))))))))))	chr19:975723-976019(+)$1	1	120	151	23.8052
.(((.((((.............)))).))))	chr16:30016750-30016999(+)$1	1	179	210	24.4433
((((((((((...........))))))....	chr22:50637650-50638076(+)$1	1	338	369	24.4433
(((((((((............))))).))))	chr2:63273139-63273417(+)$1	1	207	238	24.0060
((((.(((.............))).))))((	chr6:132211741-132212017(+)$1	1	151	182	24.4134
(((((((((.............))..)))))	chr1:234527060-234527326(-)$1	1	71	102	23.3460
((((.(((.............))).))))((	chr6:132211817-132212055(+)$1	1	75	106	24.4134
(((...((((...........))))...)))	chr1:70716471-70716698(+)$1	1	33	64	24.3168
..(((((((..............))))))).	chr20:30152311-30152599(+)$1	1	92	123	23.9984
((((((((((...........)))))).)))	chr6:43753967-43754183(+)$1	1	103	134	24.4185
((((.((((...........)))).))))))	chr12:6759701-6760043(-)$1	1	262	293	24.2536
..((..((((...........))))..))))	chr9:131152640-131152898(+)$1	1	150	181	22.8843
..(((((((..............))))))).	chr2:70438524-70438732(-)$1	1	124	155	24.5617
(((...((((...........))))...)))	chr5:130977487-130977789(-)$1	1	141	172	23.5541
((((((((((...........))))....))	chr20:17971514-17971797(+)$1	1	77	108	23.2404
((((((((.............))))))))..	chr16:67918125-67918344(+)$1	1	21	52	22.1724
(((.(((((............)))))))).)	chr6:33161303-33161549(-)$1	1	83	114	24.8856
(((((((((............))).))))))	chr1:234742452-234742772(-)$1	1	195	226	25.1126
.((.(((((............))))).))..	chr2:85618351-85618662(+)$1	1	99	130	23.9414
....((((((...........))))))..))	chr2:109125308-109125551(+)$1	1	5	36	24.5759
(((((................))))))).))	chr1:185266849-185267115(-)$1	1	139	170	22.3425
)).((.(((............))))))))))	chr2:109101732-109102116(+)$1	1	106	137	21.1513
(..(.(((((...........))))).)..)	chr1:1227697-1227934(-)$1	1	154	185	23.9966
(((.((((.(...........).))))))).	chr20:30153371-30153619(+)$1	1	80	111	23.4769
(.((((((................)))))).	chr3:148890249-148890485(-)$1	1	83	114	22.4815
((.((((((............)))))).)))	chr19:18499785-18500050(+)$1	1	153	184	25.8435
..(((((((..............))))))).	chr2:70438532-70438737(-)$1	1	129	160	24.5617
(((((.(((.............)))))))).	chrX:70795448-70795703(+)$1	1	189	220	24.7526
(((((((((............)))))).)))	chr17:8062568-8062846(-)$1	1	165	196	25.8220
.(((((((.............)))))))...	chr14:24909146-24909402(-)$1	1	84	115	26.0073
((((((.((.............)).).))))	chr12:56710827-56711111(-)$1	1	77	108	23.7020
(((((((((...........)))))))))))	chr15:34671193-34671445(-)$1	1	115	146	24.8051
.((((.(((...........)))..))))..	chr16:90238306-90238551(+)$1	1	21	52	23.1835
..(((((((............)))))))...	chr20:33515597-33515847(+)$1	1	40	71	21.4445
)).((((((..............))))))..	chr16:2652995-2653271(+)$1	1	56	87	20.7683
..(((.(((............))).)))...	chr1:55532031-55532341(-)$1	1	186	217	26.0188
(((((((..............)))))))...	chr12:48366791-48367075(-)$1	1	71	102	24.1439
((((((((((...........)))))).)))	chr6:43754043-43754273(+)$1	1	27	58	24.4185
....(((((............))))))))).	chr5:176524772-176525056(+)$1	1	54	85	24.4656
((...((((...........)))).))).))	chr2:61413834-61414077(+)$1	1	36	67	23.8687
(((.((((.(...........).))))))).	chr20:30153285-30153556(+)$1	1	166	197	23.4769
(((((.((..............)))))))))	chr5:179264352-179264634(-)$1	1	71	102	23.4361
(((..((((...........))))..))).)	chr21:35275684-35275951(-)$1	1	37	68	23.6228
(.(((((((.............))))))).)	chr1:19404368-19404616(-)$1	1	72	103	25.3013
.(((..(((................)))...	chr14:39819238-39819544(+)$1	1	109	140	22.5752
((((..((.(...........).))..))))	chr19:49611408-49611760(+)$1	1	96	127	23.2346
..(.((((((...........))))))))))	chrY:15032050-15032337(+)$1	1	101	132	23.2178
(.(((((((...........))))))).)).	chr5:137891348-137891625(-)$1	1	45	76	24.1317
((.((((((............)))))).)))	chr2:178087909-178088142(+)$1	1	60	91	25.8435
((...((((............))))..))))	chr14:50249610-50249935(+)$1	1	55	86	23.8929
...(((((((...........))))))).))	chrX:132669805-132670033(-)$1	1	129	160	25.2807
((.(((((((...........))))))).))	chr2:241818172-241818446(+)$1	1	188	219	25.1816
(((((((((............))))))....	chr7:158428780-158429112(-)$1	1	151	182	25.3572
..(((.(((...........))))))..)))	chr20:31026624-31026864(+)$1	1	96	127	24.5326
(.((((((.............))))))))))	chr20:45838042-45838345(-)$1	1	38	69	24.1931

#PSSM
d : 0.15	c : 0.13	e : 0.11	g : 0.11	! : 0.09	f : 0.06	$ : 0.05	# : 0.05	: : 0.03	i : 0.03	[ : 0.03	h : 0.03	b : 0.03	= : 0.01	% : 0.01	" : 0.01	
c : 0.16	d : 0.15	e : 0.11	g : 0.11	! : 0.09	f : 0.06	[ : 0.06	: : 0.03	i : 0.03	$ : 0.03	# : 0.03	h : 0.01	b : 0.01	= : 0.01	% : 0.01	" : 0.01	
g : 0.21	c : 0.13	d : 0.11	e : 0.09	[ : 0.08	f : 0.08	" : 0.05	! : 0.03	i : 0.03	b : 0.03	# : 0.03	: : 0.03	h : 0.01	= : 0.01	a : 0.01	
g : 0.23	f : 0.18	e : 0.09	d : 0.09	" : 0.08	[ : 0.08	c : 0.06	b : 0.05	# : 0.03	h : 0.01	a : 0.01	= : 0.01	! : 0.01	
f : 0.26	g : 0.21	e : 0.13	" : 0.08	[ : 0.08	! : 0.06	d : 0.05	b : 0.03	c : 0.03	h : 0.01	= : 0.01	
f : 0.26	g : 0.18	e : 0.11	d : 0.11	[ : 0.09	" : 0.05	! : 0.05	y : 0.03	c : 0.03	h : 0.01	a : 0.01	= : 0.01	
f : 0.24	g : 0.18	d : 0.18	c : 0.15	e : 0.08	b : 0.05	[ : 0.03	y : 0.03	h : 0.01	= : 0.01	
f : 0.23	d : 0.18	g : 0.16	c : 0.15	b : 0.09	e : 0.08	y : 0.03	h : 0.01	= : 0.01	w : 0.01	
f : 0.19	g : 0.15	d : 0.15	c : 0.11	v : 0.09	e : 0.08	b : 0.05	y : 0.05	[ : 0.05	w : 0.03	= : 0.01	
u : 0.23	v : 0.19	t : 0.13	w : 0.11	f : 0.08	y : 0.06	d : 0.06	a : 0.05	g : 0.03	e : 0.01	
t : 0.38	u : 0.23	v : 0.19	w : 0.11	y : 0.06	
t : 0.38	u : 0.23	v : 0.19	w : 0.11	y : 0.06	
t : 0.38	u : 0.23	v : 0.19	w : 0.11	y : 0.06	
t : 0.38	u : 0.23	v : 0.19	w : 0.11	y : 0.06	
t : 0.38	u : 0.23	v : 0.19	w : 0.11	y : 0.06	
t : 0.38	u : 0.23	v : 0.19	w : 0.11	y : 0.06	
t : 0.38	u : 0.23	v : 0.19	w : 0.11	y : 0.06	
t : 0.38	u : 0.23	v : 0.19	w : 0.11	y : 0.06	
t : 0.38	u : 0.23	v : 0.19	w : 0.11	y : 0.06	
t : 0.38	u : 0.23	v : 0.19	w : 0.11	y : 0.06	
t : 0.24	u : 0.23	v : 0.19	w : 0.11	y : 0.06	d : 0.05	c : 0.03	f : 0.01	= : 0.01	g : 0.01	
f : 0.19	d : 0.13	c : 0.11	g : 0.11	v : 0.09	w : 0.09	e : 0.08	a : 0.05	b : 0.03	y : 0.03	h : 0.01	= : 0.01	
f : 0.19	d : 0.15	c : 0.13	g : 0.13	b : 0.09	w : 0.08	e : 0.08	] : 0.05	y : 0.03	h : 0.01	= : 0.01	
f : 0.21	g : 0.19	d : 0.18	c : 0.11	b : 0.08	e : 0.08	2 : 0.03	y : 0.03	4 : 0.01	h : 0.01	= : 0.01	
f : 0.23	g : 0.21	] : 0.13	d : 0.13	e : 0.08	2 : 0.06	b : 0.03	c : 0.03	4 : 0.01	h : 0.01	= : 0.01	y : 0.01	
f : 0.24	g : 0.23	e : 0.13	d : 0.09	2 : 0.08	c : 0.06	4 : 0.03	3 : 0.03	h : 0.01	b : 0.01	a : 0.01	= : 0.01	
f : 0.24	g : 0.23	d : 0.11	] : 0.08	c : 0.08	2 : 0.06	e : 0.05	4 : 0.03	3 : 0.03	h : 0.01	F : 0.01	= : 0.01	
g : 0.21	d : 0.13	c : 0.13	] : 0.09	e : 0.08	f : 0.06	4 : 0.05	3 : 0.03	b : 0.03	h : 0.03	2 : 0.03	a : 0.03	i : 0.01	F : 0.01	= : 0.01	
d : 0.15	e : 0.13	g : 0.13	c : 0.11	f : 0.06	] : 0.06	3 : 0.06	4 : 0.05	b : 0.05	h : 0.05	i : 0.03	2 : 0.03	F : 0.01	= : 0.01	: : 0.01	
e : 0.16	c : 0.15	g : 0.11	d : 0.09	3 : 0.08	f : 0.06	= : 0.05	] : 0.05	2 : 0.05	i : 0.03	4 : 0.03	: : 0.03	h : 0.03	F : 0.01	b : 0.01	
e : 0.15	c : 0.11	d : 0.09	: : 0.08	] : 0.08	3 : 0.08	4 : 0.06	f : 0.06	= : 0.05	g : 0.05	2 : 0.05	i : 0.03	h : 0.03	F : 0.01	b : 0.01	

#score	1436.3733359394068
#seq	60
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_CDS_m2_run2.txt

#BEAR
eddddqqqqqqqqdddd:	chr19:50183639-50183901(+)$1	262	69	87	12.9173
gggggqqqqqqqqggggg	chr2:176044725-176044967(-)$1	242	205	223	13.8739
[ddddqqqqqqqqdddd]	chr3:129289924-129290164(-)$1	240	68	86	13.9276
!ddddqqqqqqqqdddd2	chr2:63816032-63816281(+)$1	249	162	180	13.8112
eeeeeqqqqqqqqeeeee	chr9:134004565-134004790(+)$1	225	108	126	14.0807
ff[bbqqqqqqqqbbfff	chr19:4037222-4037472(+)$1	250	38	56	13.1503
dd[bbqqqqqqqqbb]dd	chr14:50052633-50052868(-)$1	235	202	220	13.3909
eeeeeqqqqqqqqeeeee	chr14:65381098-65381355(+)$1	257	109	127	14.0807
eeeeeqqqqqqqqeeeee	chr15:66169571-66169829(+)$1	258	65	83	14.0807
ddd[aqqqqqqqqa]ddd	chr12:131357345-131357565(+)$1	220	119	137	13.3531
a[cccqqqqqqqqccc]a	chr1:153643293-153643511(-)$1	218	176	194	14.7008
b[cccqqqqqqqqccc]b	chr6:31807245-31807457(+)$1	212	170	188	14.2180
%ddddqqqqqqqqdddd6	chrX:118604829-118605077(+)$1	248	54	72	12.7137
d[cccqqqqqqqqcccdd	chr12:120635024-120635283(-)$1	259	192	210	14.3809
!!cccqqqqqqqqccc]b	chr6:26285600-26285807(-)$1	207	85	103	14.6300
gggggqqqqqqqqggggg	chr15:69747710-69747945(+)$1	235	214	232	13.8739
cccccqqqqqqqqcccGG	chr6:26033654-26033894(-)$1	240	72	90	12.9699
eeeeeqqqqqqqqeeeee	chr12:96254902-96255166(+)$1	264	217	235	14.0807
=====qqqqqqqq=====	chr8:109228549-109228797(-)$1	248	210	228	14.2585
i[cccqqqqqqqqccc]i	chr5:81573432-81573698(-)$1	266	237	255	14.7782
e[cccqqqqqqqqccc22	chr21:35279566-35279814(-)$1	248	161	179	14.4860
!!cccqqqqqqqqccc]e	chr5:68660639-68660896(-)$1	257	155	173	14.9384
ee[bbqqqqqqqqbb]ee	chr4:109543228-109543448(+)$1	220	188	206	13.8304
[ddddqqqqqqqqddddg	chr11:75111648-75111873(+)$1	225	65	83	13.8977
"ddddqqqqqqqqdddd2	chr2:47606918-47607211(+)$1	293	83	101	13.7515
fffffqqqqqqqqfffff	chr6:133138538-133138746(+)$1	208	123	141	13.0090
d[cccqqqqqqqqccc]d	chr6:10730777-10731042(+)$1	265	150	168	14.5731
ggcccqqqqqqqqccc33	chr6:10725113-10725364(+)$1	251	81	99	14.6183
b[cccqqqqqqqqccc]b	chr2:198352976-198353220(-)$1	244	60	78	14.2180
""cccqqqqqqqqccc77	chr5:149826297-149826576(-)$1	279	81	99	13.3952
eeeeeqqqqqqqqeeeee	chr6:26027079-26027313(-)$1	234	19	37	14.0807
Gddddqqqqqqqqddddc	chr6:26204942-26205167(+)$1	225	12	30	13.1253
"""bbqqqqqqqqbb333	chr13:28196987-28197249(+)$1	262	138	156	13.9354
dd!!aqqqqqqqqa22dd	chrX:48432846-48433062(+)$1	216	114	132	13.0425
eeeeeqqqqqqqqeeeee	chr14:23503893-23504138(-)$1	245	18	36	14.0807
!!cccqqqqqqqqccc22	chr1:149859328-149859552(-)$1	224	72	90	14.5620
fffffqqqqqqqqfffff	chr6:133138523-133138730(+)$1	207	138	156	13.0090
eeeeeqqqqqqqqeeeee	chrX:48433454-48433685(+)$1	231	123	141	14.0807
eeeeeqqqqqqqqeeeee	chr12:120638432-120638666(-)$1	234	192	210	14.0807
ee[bbqqqqqqqqbb]ee	chr7:102938937-102939255(+)$1	318	141	159	13.8304
eeeeeqqqqqqqqeeeee	chr12:98994916-98995138(+)$1	222	112	130	14.0807
iiiiiqqqqqqqqiiiii	chr12:56553659-56553902(+)$1	243	113	131	13.9220
eeeeeqqqqqqqqeeeee	chr3:197677929-197678133(+)$1	204	166	184	14.0807
[ddddqqqqqqqqddddc	chr17:41170047-41170285(-)$1	238	188	206	13.8557
ee[bbqqqqqqqqbb]ee	chr4:109543248-109543460(+)$1	212	168	186	13.8304
!!cccqqqqqqqqccc22	chr6:35438020-35438228(+)$1	208	91	109	14.5620
#ddddqqqqqqqqdddd3	chr14:65390635-65390895(+)$1	260	200	218	13.9235
cc[bbqqqqqqqqbb]cc	chr4:109546212-109546462(+)$1	250	93	111	13.3682
c[cccqqqqqqqqccc]c	chr16:75661613-75661916(-)$1	303	232	250	14.6769
"""bbqqqqqqqqbb444	chr14:50050286-50050493(-)$1	207	137	155	13.7576
"""bbqqqqqqqqbb]dd	chr8:125555241-125555551(+)$1	310	202	220	13.6078
c!!bbqqqqqqqqbb22c	chr19:17972815-17973051(+)$1	236	203	221	13.4505
a[cccqqqqqqqqccc]a	chr17:79479188-79479407(-)$1	219	112	130	14.7008
eeeeeqqqqqqqqeeeee	chr16:57792555-57792902(-)$1	347	252	270	14.0807
d!!bbqqqqqqqqbb22d	chr8:146017057-146017276(-)$1	219	83	101	13.3467
gggggqqqqqqqqggggg	chr13:76104148-76104451(-)$1	303	82	100	13.8739
b[cccqqqqqqqqccc]b	chr6:31807280-31807512(+)$1	232	135	153	14.2180
eeeeeqqqqqqqqeeeee	chr10:96997694-96997965(-)$1	271	194	212	14.0807
iiiiiqqqqqqqqiiiii	chr12:121790025-121790316(-)$1	291	206	224	13.9220
[ddddqqqqqqqqdddd]	chr7:10973153-10973420(-)$1	267	99	117	13.9276
e[cccqqqqqqqqccc]e	chr20:60887590-60887867(-)$1	277	61	79	14.8623
eeeeeqqqqqqqqeeeee	chr9:139735204-139735463(+)$1	259	48	66	14.0807
fffffqqqqqqqqfffff	chr11:125447297-125447566(+)$1	269	125	143	13.0090
=====qqqqqqqq=====	chr4:25419875-25420131(+)$1	256	220	238	14.2585
fffffqqqqqqqqfffff	chr19:3976072-3976312(-)$1	240	78	96	13.0090
eeeeeqqqqqqqqeeeee	chr17:37006285-37006543(-)$1	258	233	251	14.0807
c[cccqqqqqqqqccc]c	chr11:32610038-32610306(+)$1	268	67	85	14.6769
[ddddqqqqqqqqdddd]	chrX:151935310-151935579(-)$1	269	37	55	13.9276

#otherMatches

#Seq PSSM
AGAUCUGACCCAUGAUCC	chr19:50183639-50183901(+)$1	262	69	87	12.9173
UGAAGGAAAAAAACUUUA	chr2:176044725-176044967(-)$1	242	205	223	13.8739
CCUGAGCAACGCAUCAGC	chr3:129289924-129290164(-)$1	240	68	86	13.9276
CGGGUUCCUGCCCACCUC	chr2:63816032-63816281(+)$1	249	162	180	13.8112
GCAAAAACGCCCAUUUGC	chr9:134004565-134004790(+)$1	225	108	126	14.0807
UUGCAGAGAGAAGUGGGG	chr19:4037222-4037472(+)$1	250	38	56	13.1503
UAGGCGUCUGCAGGCGUA	chr14:50052633-50052868(-)$1	235	202	220	13.3909
GUCGCGAUGUGUGGCGAC	chr14:65381098-65381355(+)$1	257	109	127	14.0807
AUUCAUCUGACAUUGAAU	chr15:66169571-66169829(+)$1	258	65	83	14.0807
GGUAUGUGCUGGAAAACC	chr12:131357345-131357565(+)$1	220	119	137	13.3531
UGGGCCGAAAGAAGUCGG	chr1:153643293-153643511(-)$1	218	176	194	14.7008
UGGGGGAAAAAUGCCUGA	chr6:31807245-31807457(+)$1	212	170	188	14.2180
ACGCUUGACUGCUGGCGG	chrX:118604829-118605077(+)$1	248	54	72	12.7137
GACUGUGACAAAUUAGCA	chr12:120635024-120635283(-)$1	259	192	210	14.3809
UGGCCGUGGUAAAGGUGG	chr6:26285600-26285807(-)$1	207	85	103	14.6300
CAAAAAUGGUCUGUUUUG	chr15:69747710-69747945(+)$1	235	214	232	13.8739
GCGAUUUUCCCUUAUCAG	chr6:26033654-26033894(-)$1	240	72	90	12.9699
accuuauuucucaaaggu	chr12:96254902-96255166(+)$1	264	217	235	14.0807
UGUAACGUUAAUCUUGCA	chr8:109228549-109228797(-)$1	248	210	228	14.2585
AUGAACUUACGAAUUCUU	chr5:81573432-81573698(-)$1	266	237	255	14.7782
UCUGCAUCUGUAAGUAAC	chr21:35279566-35279814(-)$1	248	161	179	14.4860
CUUGGUCUUGAAUUCAUU	chr5:68660639-68660896(-)$1	257	155	173	14.9384
AUCCCUUGACGAUGGAAU	chr4:109543228-109543448(+)$1	220	188	206	13.8304
UGAACUUUGCUUUGUUUG	chr11:75111648-75111873(+)$1	225	65	83	13.8977
AUGUUGAUGAAAAAGCAC	chr2:47606918-47607211(+)$1	293	83	101	13.7515
AUUUCAAAUGCAAGAAAU	chr6:133138538-133138746(+)$1	208	123	141	13.0090
GAAGAAUUAAAAAUCUGC	chr6:10730777-10731042(+)$1	265	150	168	14.5731
GUGCCUUUGCAUUGGUUU	chr6:10725113-10725364(+)$1	251	81	99	14.6183
CCCUUAAUGCUACAAGAG	chr2:198352976-198353220(-)$1	244	60	78	14.2180
AAGGUAAAGGCAGACCGA	chr5:149826297-149826576(-)$1	279	81	99	13.3952
CUGGAGAACGUGAUCCGG	chr6:26027079-26027313(-)$1	234	19	37	14.0807
AGGGCAUUACCAAGCCUG	chr6:26204942-26205167(+)$1	225	12	30	13.1253
AGACCAUACCCUAGGAAA	chr13:28196987-28197249(+)$1	262	138	156	13.9354
GGUAAGUUGCAUAUGUCC	chrX:48432846-48433062(+)$1	216	114	132	13.0425
CAGAAUUAGUUCUUUCUG	chr14:23503893-23504138(-)$1	245	18	36	14.0807
CAAUUUUAGCCGUAAUGU	chr1:149859328-149859552(-)$1	224	72	90	14.5620
AUUUCAAAUGCAAGAAAU	chr6:133138523-133138730(+)$1	207	138	156	13.0090
GAAGAAGGAAAGCUCUUC	chrX:48433454-48433685(+)$1	231	123	141	14.0807
UCagcugcuaugugcuga	chr12:120638432-120638666(-)$1	234	192	210	14.0807
UUCCUGAAACAAGAGUAA	chr7:102938937-102939255(+)$1	318	141	159	13.8304
UCUCUGGUCCUCAAGAGA	chr12:98994916-98995138(+)$1	222	112	130	14.0807
GUGCUGGACUUUGAGCAC	chr12:56553659-56553902(+)$1	243	113	131	13.9220
UCUUCUUAAAAUUGAAGG	chr3:197677929-197678133(+)$1	204	166	184	14.0807
ACACGACUGACUACGUGG	chr17:41170047-41170285(-)$1	238	188	206	13.8557
AUCCCUUGACGAUGGAAU	chr4:109543248-109543460(+)$1	212	168	186	13.8304
AGUUCCAAAUGAAGAAGG	chr6:35438020-35438228(+)$1	208	91	109	14.5620
CCUAUGAUCGUAAGUAGA	chr14:65390635-65390895(+)$1	260	200	218	13.9235
GAGGAGCAGAAAAUCGUU	chr4:109546212-109546462(+)$1	250	93	111	13.3682
UGUUCAGCCAUCAGAAGA	chr16:75661613-75661916(-)$1	303	232	250	14.6769
GCAUCUACUCAAUGAAAA	chr14:50050286-50050493(-)$1	207	137	155	13.7576
ACCGUCAGCAUCCACAGC	chr8:125555241-125555551(+)$1	310	202	220	13.6078
UGUCACCCAGUGCUGUAA	chr19:17972815-17973051(+)$1	236	203	221	13.4505
CCGUGUUUCCUUCCAUCG	chr17:79479188-79479407(-)$1	219	112	130	14.7008
ACGGUGUCUCUCGGCUGU	chr16:57792555-57792902(-)$1	347	252	270	14.0807
UUCACACGGGCCAGUUUG	chr8:146017057-146017276(-)$1	219	83	101	13.3467
GUGAGCUCAGACACUUGC	chr13:76104148-76104451(-)$1	303	82	100	13.8739
UGGGGGAAAAAUGCCUGA	chr6:31807280-31807512(+)$1	232	135	153	14.2180
GUGGAGGAUCAAAUCUAC	chr10:96997694-96997965(-)$1	271	194	212	14.0807
CCCAUGAUGACCAAUGGG	chr12:121790025-121790316(-)$1	291	206	224	13.9220
AGUUCUACUCAGUGAAUG	chr7:10973153-10973420(-)$1	267	99	117	13.9276
AAGCGUGUGCUGGUGCGU	chr20:60887590-60887867(-)$1	277	61	79	14.8623
CUCAGGGAUGUGACUGAG	chr9:139735204-139735463(+)$1	259	48	66	14.0807
AGUAUUUAUUCCUGUGCU	chr11:125447297-125447566(+)$1	269	125	143	13.0090
AUAAACAGUAAAUUUUAU	chr4:25419875-25420131(+)$1	256	220	238	14.2585
UUUAACAAACGCAUUAAG	chr19:3976072-3976312(-)$1	240	78	96	13.0090
CCCUGuucacuuccaggg	chr17:37006285-37006543(-)$1	258	233	251	14.0807
AUCACUGUUGAUUGUGUU	chr11:32610038-32610306(+)$1	268	67	85	14.6769
AUCGCAAGAGAGGGCGAC	chrX:151935310-151935579(-)$1	269	37	55	13.9276

#DB
)((((........)))).	chr19:50183639-50183901(+)$1	1	69	87	12.9173
(((((........)))))	chr2:176044725-176044967(-)$1	1	205	223	13.8739
.((((........)))).	chr3:129289924-129290164(-)$1	1	68	86	13.9276
.((((........)))).	chr2:63816032-63816281(+)$1	1	162	180	13.8112
(((((........)))))	chr9:134004565-134004790(+)$1	1	108	126	14.0807
((.((........)))))	chr19:4037222-4037472(+)$1	1	38	56	13.1503
((.((........)).))	chr14:50052633-50052868(-)$1	1	202	220	13.3909
(((((........)))))	chr14:65381098-65381355(+)$1	1	109	127	14.0807
(((((........)))))	chr15:66169571-66169829(+)$1	1	65	83	14.0807
(((.(........).)))	chr12:131357345-131357565(+)$1	1	119	137	13.3531
(.(((........))).)	chr1:153643293-153643511(-)$1	1	176	194	14.7008
(.(((........))).)	chr6:31807245-31807457(+)$1	1	170	188	14.2180
.((((........)))).	chrX:118604829-118605077(+)$1	1	54	72	12.7137
(.(((........)))))	chr12:120635024-120635283(-)$1	1	192	210	14.3809
..(((........))).)	chr6:26285600-26285807(-)$1	1	85	103	14.6300
(((((........)))))	chr15:69747710-69747945(+)$1	1	214	232	13.8739
))(((........)))))	chr6:26033654-26033894(-)$1	1	72	90	12.9699
(((((........)))))	chr12:96254902-96255166(+)$1	1	217	235	14.0807
(((((........)))))	chr8:109228549-109228797(-)$1	1	210	228	14.2585
(.(((........))).)	chr5:81573432-81573698(-)$1	1	237	255	14.7782
(.(((........)))..	chr21:35279566-35279814(-)$1	1	161	179	14.4860
..(((........))).)	chr5:68660639-68660896(-)$1	1	155	173	14.9384
((.((........)).))	chr4:109543228-109543448(+)$1	1	188	206	13.8304
.((((........)))))	chr11:75111648-75111873(+)$1	1	65	83	13.8977
.((((........)))).	chr2:47606918-47607211(+)$1	1	83	101	13.7515
(((((........)))))	chr6:133138538-133138746(+)$1	1	123	141	13.0090
(.(((........))).)	chr6:10730777-10731042(+)$1	1	150	168	14.5731
(((((........)))..	chr6:10725113-10725364(+)$1	1	81	99	14.6183
(.(((........))).)	chr2:198352976-198353220(-)$1	1	60	78	14.2180
..(((........)))..	chr5:149826297-149826576(-)$1	1	81	99	13.3952
(((((........)))))	chr6:26027079-26027313(-)$1	1	19	37	14.0807
(((((........))))(	chr6:26204942-26205167(+)$1	1	12	30	13.1253
...((........))...	chr13:28196987-28197249(+)$1	1	138	156	13.9354
((..(........)..))	chrX:48432846-48433062(+)$1	1	114	132	13.0425
(((((........)))))	chr14:23503893-23504138(-)$1	1	18	36	14.0807
..(((........)))..	chr1:149859328-149859552(-)$1	1	72	90	14.5620
(((((........)))))	chr6:133138523-133138730(+)$1	1	138	156	13.0090
(((((........)))))	chrX:48433454-48433685(+)$1	1	123	141	14.0807
(((((........)))))	chr12:120638432-120638666(-)$1	1	192	210	14.0807
((.((........)).))	chr7:102938937-102939255(+)$1	1	141	159	13.8304
(((((........)))))	chr12:98994916-98995138(+)$1	1	112	130	14.0807
(((((........)))))	chr12:56553659-56553902(+)$1	1	113	131	13.9220
(((((........)))))	chr3:197677929-197678133(+)$1	1	166	184	14.0807
.((((........)))))	chr17:41170047-41170285(-)$1	1	188	206	13.8557
((.((........)).))	chr4:109543248-109543460(+)$1	1	168	186	13.8304
..(((........)))..	chr6:35438020-35438228(+)$1	1	91	109	14.5620
.((((........)))).	chr14:65390635-65390895(+)$1	1	200	218	13.9235
((.((........)).))	chr4:109546212-109546462(+)$1	1	93	111	13.3682
(.(((........))).)	chr16:75661613-75661916(-)$1	1	232	250	14.6769
...((........))...	chr14:50050286-50050493(-)$1	1	137	155	13.7576
...((........)).))	chr8:125555241-125555551(+)$1	1	202	220	13.6078
(..((........))..)	chr19:17972815-17973051(+)$1	1	203	221	13.4505
(.(((........))).)	chr17:79479188-79479407(-)$1	1	112	130	14.7008
(((((........)))))	chr16:57792555-57792902(-)$1	1	252	270	14.0807
(..((........))..)	chr8:146017057-146017276(-)$1	1	83	101	13.3467
(((((........)))))	chr13:76104148-76104451(-)$1	1	82	100	13.8739
(.(((........))).)	chr6:31807280-31807512(+)$1	1	135	153	14.2180
(((((........)))))	chr10:96997694-96997965(-)$1	1	194	212	14.0807
(((((........)))))	chr12:121790025-121790316(-)$1	1	206	224	13.9220
.((((........)))).	chr7:10973153-10973420(-)$1	1	99	117	13.9276
(.(((........))).)	chr20:60887590-60887867(-)$1	1	61	79	14.8623
(((((........)))))	chr9:139735204-139735463(+)$1	1	48	66	14.0807
(((((........)))))	chr11:125447297-125447566(+)$1	1	125	143	13.0090
(((((........)))))	chr4:25419875-25420131(+)$1	1	220	238	14.2585
(((((........)))))	chr19:3976072-3976312(-)$1	1	78	96	13.0090
(((((........)))))	chr17:37006285-37006543(-)$1	1	233	251	14.0807
(.(((........))).)	chr11:32610038-32610306(+)$1	1	67	85	14.6769
.((((........)))).	chrX:151935310-151935579(-)$1	1	37	55	13.9276

#PSSM
e : 0.29	d : 0.08	[ : 0.07	! : 0.07	f : 0.07	c : 0.07	" : 0.07	g : 0.05	b : 0.04	i : 0.04	a : 0.02	= : 0.02	% : 0.01	G : 0.01	# : 0.01	
e : 0.25	d : 0.20	[ : 0.17	! : 0.08	f : 0.07	g : 0.05	" : 0.05	c : 0.02	= : 0.02	i : 0.02	
c : 0.27	e : 0.20	d : 0.17	[ : 0.08	f : 0.05	g : 0.04	" : 0.04	! : 0.04	= : 0.02	i : 0.02	
c : 0.27	e : 0.20	d : 0.16	b : 0.16	f : 0.05	g : 0.04	= : 0.02	i : 0.02	[ : 0.01	! : 0.01	
c : 0.27	e : 0.20	d : 0.16	b : 0.16	f : 0.05	g : 0.04	a : 0.02	= : 0.02	i : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.27	e : 0.20	d : 0.16	b : 0.16	f : 0.05	g : 0.04	a : 0.02	= : 0.02	i : 0.02	
c : 0.27	e : 0.20	d : 0.16	b : 0.16	f : 0.05	g : 0.04	= : 0.02	i : 0.02	] : 0.01	2 : 0.01	
c : 0.27	e : 0.20	d : 0.17	] : 0.08	f : 0.07	g : 0.04	2 : 0.04	= : 0.02	i : 0.02	3 : 0.01	4 : 0.01	
e : 0.25	d : 0.23	] : 0.17	f : 0.07	2 : 0.07	g : 0.04	= : 0.02	3 : 0.02	i : 0.02	G : 0.01	7 : 0.01	c : 0.01	4 : 0.01	
e : 0.27	d : 0.10	c : 0.08	2 : 0.07	f : 0.07	g : 0.05	b : 0.05	] : 0.04	i : 0.04	3 : 0.04	a : 0.02	= : 0.02	: : 0.01	6 : 0.01	G : 0.01	7 : 0.01	4 : 0.01	

#score	946.9906282489012
#seq	68
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF469SRC_SAFB_transcript_m2_run2.txt

#BEAR
cc$$$$$ddddoooooodddd22ccc333	chr17:166811-167096(-)$1	285	253	282	14.1114
========[cccnnnnnccc=========	chr20:30951596-30951877(+)$1	281	67	96	11.6637
d####iiiiiiiiillliiiiiiiiiddd	chr2:236961541-236961858(+)$1	317	264	293	10.0326
dddccc[ddddoooooodddd]ccc]ddd	chr7:157567788-157568052(-)$1	264	7	36	12.6360
===="""ddddoooooodddd========	chr21:47560220-47560544(-)$1	324	43	72	15.7334
b"""eeeee[aooooooa]eeeee22bb3	chr6:3319169-3319419(-)$1	250	37	66	13.1285
eeee####cccooooooccc22eeeee::	chr20:36134504-36134802(-)$1	298	134	163	11.7406
iiiiii[ddddooooooddddiiiiiiii	chr1:146676109-146676353(-)$1	244	193	222	14.7303
ee[dddd[cccooooooccc]dddd]eee	chr10:61003207-61003491(+)$1	284	135	164	11.6921
cc[eeeee!!aooooooa22eeeee]ccc	chr6:1898673-1898941(-)$1	268	75	104	13.4784
ffffff[ddddoooooodddd22ffffff	chr7:157568224-157568493(-)$1	269	60	89	12.2885
gggg[ccc!!aooooooa22cccgggggg	chr13:98882682-98882941(+)$1	259	111	140	14.1708
$$$$gggggggooooooggggggg4444d	chr13:33110251-33110486(-)$1	235	168	197	13.1124
ccc[a[bb[bboooooobb]bb]a]ccc]	chr11:65267983-65268191(+)$1	208	166	195	15.2996
eeee!!bb!!aooooooa]bb22eeeee2	chr17:164425-164759(-)$1	334	59	88	13.4545
fffff[cccbboooooobb]cccffffff	chr16:8926584-8926875(+)$1	291	198	227	12.6022
ccc[a[bb[bboooooobb]bb]a]ccc]	chr11:65268030-65268233(+)$1	203	119	148	15.2996
cc####eeeeeooooooeeeee333ccc2	chr11:65267936-65268145(+)$1	209	67	96	15.0488
gg!!a!!bb[aooooooabb22a]ggggg	chr3:197248749-197248989(-)$1	240	11	40	14.4127
ccc"""eeeeeooooooeeeee333ccc]	chr6:159047122-159047377(+)$1	255	94	123	15.1655
ddd!!ccc[bboooooobbccc]dddd]d	chr6:157731472-157731769(-)$1	297	162	191	13.2523
gggggg[ddddooooooddddggggggg:	chr12:26804735-26805033(-)$1	298	102	131	13.3780
d!!bbffffffooooooffffff]bb444	chr7:157943415-157943703(-)$1	288	230	259	11.2711
cciiiiiiiiiannnnna]iiiiiiiiiC	chr1:12672103-12672338(-)$1	235	154	183	10.3128
eeeee####bboooooobb333eeeee::	chr3:195418848-195419136(+)$1	288	182	211	11.7473
dddd!!bb!!aooooooa]bb22dddd33	chr17:165791-166051(-)$1	260	100	129	13.4059
:ccc[bbddddoooooodddd]bb]ccc:	chr11:65268069-65268276(+)$1	207	50	79	11.9653
ccc[a[bb[bboooooobb]bb]a]ccc]	chr11:65268026-65268230(+)$1	204	123	152	15.2996
=========cccnnnnnccc]========	chr7:157630226-157630519(-)$1	293	154	183	11.4314
cbb$$$$$cccooooooccc4444bb]cc	chr3:196693479-196693757(-)$1	278	58	87	13.0880
===ccc!!cccooooooccc4444ccc]=	chr3:50005781-50006047(+)$1	266	217	246	14.6459
ccc"""eeeeeooooooeeeeeccc]bb:	chr22:51147618-51147934(+)$1	316	116	145	12.9438
===========oooooo===========a	chr11:65267488-65267707(+)$1	219	16	45	16.0982
gg[cccccc[aooooooa]ccc]ccc]gg	chr1:78098338-78098678(-)$1	340	261	290	14.3173
=========bboooooobb22========	chr2:238487816-238488103(-)$1	287	11	40	15.5163
ccc[a[bb[bboooooobb]bb]a]ccc:	chr11:65267976-65268183(+)$1	207	173	202	14.4791
=========[aooooooa]==========	chr7:158212758-158213073(-)$1	315	235	264	16.3612
!!bb!!bb[bboooooobb]bb22bb]dd	chr22:49120642-49120988(+)$1	346	139	168	12.9610
cc####eeeeeooooooeeeee333ccc2	chr11:65267957-65268176(+)$1	219	46	75	15.0488
e"""gggggggoooooogggggggeeeee	chr16:87957134-87957393(-)$1	259	63	92	13.4515
gggggg[ddddooooooddddggggggg:	chr16:89547133-89547430(-)$1	297	87	116	13.3780
:ccc[bbddddoooooodddd]bb]ccc:	chr11:65268076-65268281(+)$1	205	43	72	11.9653
iiiiiii####ccclllccciiiiiiiii	chr7:29252930-29253193(+)$1	263	90	119	10.0410
fffff!!ddddoooooodddd]ffffff2	chr8:9629646-9629922(+)$1	276	201	230	12.8886
cc####eeeeeooooooeeeee333ccc2	chr11:65267928-65268136(+)$1	208	75	104	15.0488
=========[aooooooa]==========	chr7:158212678-158212958(-)$1	280	120	149	16.3612
:ccc[bbddddoooooodddd]bb]ccc:	chr11:65268081-65268308(+)$1	227	38	67	11.9653
ffffffbb[bboooooobb]bb22fffff	chr16:89433330-89433612(-)$1	282	79	108	12.2945
===========[allla]===========	chr7:157633676-157633923(-)$1	247	135	164	11.9791
b"""eeeee[aooooooaeeeee4444bb	chr1:146671410-146671734(-)$1	324	74	103	13.4208
hhhh####cccooooooccc22hhhhhhh	chrX:20268830-20269092(-)$1	262	116	145	12.2910
$$$eeeee[bboooooobbeeeee22ccc	chr20:36138028-36138275(-)$1	247	25	54	12.4770
ccc[a[bb[bboooooobb]bb]a]ccc]	chr11:65268033-65268238(+)$1	205	116	145	15.2996

#otherMatches

#Seq PSSM
ACAGAGACUACAGGUCAGUGGAGGUGGAG	chr17:166811-167096(-)$1	285	253	282	14.1114
UACAAAUUAUUGGAACAUAAAGUUUGUAG	chr20:30951596-30951877(+)$1	281	67	96	11.6637
GAGAAGUUGCCAAGCUCCUUGGUGACCCU	chr2:236961541-236961858(+)$1	317	264	293	10.0326
CAGGGUGAGGUGAGGUAGCCUGGCCACUG	chr7:157567788-157568052(-)$1	264	7	36	12.6360
CUGUGAGCCACGUGAAGGUGGACGGGGAG	chr21:47560220-47560544(-)$1	324	43	72	15.7334
cauaaagaugcacuggagggucuuaagca	chr6:3319169-3319419(-)$1	250	37	66	13.1285
ggagaagaccaaaaacaugggguuccuag	chr20:36134504-36134802(-)$1	298	134	163	11.7406
UCUGAGGAUUGGCCUGUCAGUUUCAGAGG	chr1:146676109-146676353(-)$1	244	193	222	14.7303
gguuuucaggugguagaauucgagaccca	chr10:61003207-61003491(+)$1	284	135	164	11.6921
CAAAGUCUUUCUUCCAUGCUAGACUGUGA	chr6:1898673-1898941(-)$1	268	75	104	13.4784
CCCUGGAUGCCCCAGCAGGUACCCCAGGG	chr7:157568224-157568493(-)$1	269	60	89	12.2885
ggcuuguugugaggucccugggcagcuca	chr13:98882682-98882941(+)$1	259	111	140	14.1708
CCCAGUUUGAACUAUCAUUUAAACAUUCA	chr13:33110251-33110486(-)$1	235	168	197	13.1124
ACGGAGGAGGCGAGCAGGCGUUGUGCGUA	chr11:65267983-65268191(+)$1	208	166	195	15.2996
GGUCAAUGGAGGUGGAGCACAGAGACUAC	chr17:164425-164759(-)$1	334	59	88	13.4545
CAACAAGGCGCCCAAGAGCUGUCUGUUGA	chr16:8926584-8926875(+)$1	291	198	227	12.6022
ACGGAGGAGGCGAGCAGGCGUUGUGCGUA	chr11:65268030-65268233(+)$1	203	119	148	15.2996
CCAGGAGCCAGUGCGAUUUGGUGAAGGAA	chr11:65267936-65268145(+)$1	209	67	96	15.0488
UCGAGGAGCACGGGGAGGGUAGCGGGGGC	chr3:197248749-197248989(-)$1	240	11	40	14.4127
GCUUGGUCCUGUUGUGUCAGGGAGUGGCG	chr6:159047122-159047377(+)$1	255	94	123	15.1655
ACUGGGGCACUAUGAUGAGGCUAGGUGAG	chr6:157731472-157731769(-)$1	297	162	191	13.2523
ggagcagcuguggaaaagcagugcuucua	chr12:26804735-26805033(-)$1	298	102	131	13.3780
CGCGGUGCUGCAGAUACGCAGCGUCUCAC	chr7:157943415-157943703(-)$1	288	230	259	11.2711
AGGCAGGUAGGCUACCUGUCCUACCUGUG	chr1:12672103-12672338(-)$1	235	154	183	10.3128
ggaaugaugccaucaccggaaaguuccau	chr3:195418848-195419136(+)$1	288	182	211	11.7473
GGUCAAUGGAGGUGGAGCACAGGGACUGC	chr17:165791-166051(-)$1	260	100	129	13.4059
AGGUAGCAGGCGGCUUGGCUUGGCAACCA	chr11:65268069-65268276(+)$1	207	50	79	11.9653
ACGGAGGAGGCGAGCAGGCGUUGUGCGUA	chr11:65268026-65268230(+)$1	204	123	152	15.2996
UGCGGGGGCUGGAUGCACCGUGUCCUUGC	chr7:157630226-157630519(-)$1	293	154	183	11.4314
UCUGAAUGAAUGAAUGAAUUAAUGAGCAG	chr3:196693479-196693757(-)$1	278	58	87	13.0880
GAUGCUGGUCUGUUUAAAGAAGAAGGCGG	chr3:50005781-50006047(+)$1	266	217	246	14.6459
cgcuaauccugcucauucaggagugaggc	chr22:51147618-51147934(+)$1	316	116	145	12.9438
UUUAAUUUCUGGUGGUGCAGAAGUUAGAA	chr11:65267488-65267707(+)$1	219	16	45	16.0982
GUGAUUCAGCUGUUAUAAACUGUGAUGAC	chr1:78098338-78098678(-)$1	340	261	290	14.3173
uggaggaggccuggaauggauucuccuuc	chr2:238487816-238488103(-)$1	287	11	40	15.5163
ACGGAGGAGGCGAGCAGGCGUUGUGCGUA	chr11:65267976-65268183(+)$1	207	173	202	14.4791
AAUUGGGAGGGAGAACAUGUUCCCAGUUC	chr7:158212758-158213073(-)$1	315	235	264	16.3612
AGAGGGCCAGGGGCGCACCAGGAACUGUG	chr22:49120642-49120988(+)$1	346	139	168	12.9610
CCAGGAGCCAGUGCGAUUUGGUGAAGGAA	chr11:65267957-65268176(+)$1	219	46	75	15.0488
CUUUGAAGGUUAUUUUGGACUUUUGUUUG	chr16:87957134-87957393(-)$1	259	63	92	13.4515
GCCCACAUUCUGGAGGGAGAAGUGGGCAU	chr16:89547133-89547430(-)$1	297	87	116	13.3780
AGGUAGCAGGCGGCUUGGCUUGGCAACCA	chr11:65268076-65268281(+)$1	205	43	72	11.9653
UUUUUCCUAUUGGAUCUUCCGGAGAAAAG	chr7:29252930-29253193(+)$1	263	90	119	10.0410
agggacagauaggcuuauauuaucucucu	chr8:9629646-9629922(+)$1	276	201	230	12.8886
CCAGGAGCCAGUGCGAUUUGGUGAAGGAA	chr11:65267928-65268136(+)$1	208	75	104	15.0488
AAUUGGGAGGGAGAACAUGUUCCCAGUUC	chr7:158212678-158212958(-)$1	280	120	149	16.3612
AGGUAGCAGGCGGCUUGGCUUGGCAACCA	chr11:65268081-65268308(+)$1	227	38	67	11.9653
UUGAGGUAGUGAGUAUCCGGUGAGUCUCG	chr16:89433330-89433612(-)$1	282	79	108	12.2945
UGCCCUGUGCUGGGAGCGAGUGCAGGGCG	chr7:157633676-157633923(-)$1	247	135	164	11.9791
ugaaugcucacugggccggggcaggagag	chr1:146671410-146671734(-)$1	324	74	103	13.4208
uauccugauagcaaaaccuaaagauagua	chrX:20268830-20269092(-)$1	262	116	145	12.2910
UACUAGGAUGACCAACCUCUCCUAUGGGC	chr20:36138028-36138275(-)$1	247	25	54	12.4770
ACGGAGGAGGCGAGCAGGCGUUGUGCGUA	chr11:65268033-65268238(+)$1	205	116	145	15.2996

#DB
((.....((((......))))..)))...	chr17:166811-167096(-)$1	1	253	282	14.1114
((((((((.(((.....))))))))))))	chr20:30951596-30951877(+)$1	1	67	96	11.6637
(....(((((((((...))))))))))))	chr2:236961541-236961858(+)$1	1	264	293	10.0326
((((((.((((......)))).))).)))	chr7:157567788-157568052(-)$1	1	7	36	12.6360
((((...((((......))))))))))))	chr21:47560220-47560544(-)$1	1	43	72	15.7334
(...(((((.(......).)))))..)).	chr6:3319169-3319419(-)$1	1	37	66	13.1285
((((....(((......)))..)))))..	chr20:36134504-36134802(-)$1	1	134	163	11.7406
((((((.((((......))))))))))))	chr1:146676109-146676353(-)$1	1	193	222	14.7303
((.((((.(((......))).)))).)))	chr10:61003207-61003491(+)$1	1	135	164	11.6921
((.(((((..(......)..))))).)))	chr6:1898673-1898941(-)$1	1	75	104	13.4784
((((((.((((......))))..))))))	chr7:157568224-157568493(-)$1	1	60	89	12.2885
((((.(((..(......)..)))))))))	chr13:98882682-98882941(+)$1	1	111	140	14.1708
....(((((((......)))))))....)	chr13:33110251-33110486(-)$1	1	168	197	13.1124
(((.(.((.((......)).)).).))).	chr11:65267983-65268191(+)$1	1	166	195	15.2996
((((..((..(......).))..))))).	chr17:164425-164759(-)$1	1	59	88	13.4545
(((((.(((((......)).)))))))))	chr16:8926584-8926875(+)$1	1	198	227	12.6022
(((.(.((.((......)).)).).))).	chr11:65268030-65268233(+)$1	1	119	148	15.2996
((....(((((......)))))...))).	chr11:65267936-65268145(+)$1	1	67	96	15.0488
((..(..((.(......)))..).)))))	chr3:197248749-197248989(-)$1	1	11	40	14.4127
(((...(((((......)))))...))).	chr6:159047122-159047377(+)$1	1	94	123	15.1655
(((..(((.((......))))).)))).)	chr6:157731472-157731769(-)$1	1	162	191	13.2523
((((((.((((......))))))))))).	chr12:26804735-26805033(-)$1	1	102	131	13.3780
(..((((((((......)))))).))...	chr7:157943415-157943703(-)$1	1	230	259	11.2711
))((((((((((.....).))))))))))	chr1:12672103-12672338(-)$1	1	154	183	10.3128
(((((....((......))...)))))..	chr3:195418848-195419136(+)$1	1	182	211	11.7473
((((..((..(......).))..))))..	chr17:165791-166051(-)$1	1	100	129	13.4059
.(((.((((((......)))).)).))).	chr11:65268069-65268276(+)$1	1	50	79	11.9653
(((.(.((.((......)).)).).))).	chr11:65268026-65268230(+)$1	1	123	152	15.2996
((((((((((((.....))).))))))))	chr7:157630226-157630519(-)$1	1	154	183	11.4314
(((.....(((......)))....)).))	chr3:196693479-196693757(-)$1	1	58	87	13.0880
((((((..(((......)))....))).)	chr3:50005781-50006047(+)$1	1	217	246	14.6459
(((...(((((......)))))))).)).	chr22:51147618-51147934(+)$1	1	116	145	12.9438
(((((((((((......)))))))))))(	chr11:65267488-65267707(+)$1	1	16	45	16.0982
((.((((((.(......).))).))).))	chr1:78098338-78098678(-)$1	1	261	290	14.3173
(((((((((((......))..))))))))	chr2:238487816-238488103(-)$1	1	11	40	15.5163
(((.(.((.((......)).)).).))).	chr11:65267976-65268183(+)$1	1	173	202	14.4791
(((((((((.(......).))))))))))	chr7:158212758-158213073(-)$1	1	235	264	16.3612
..((..((.((......)).))..)).))	chr22:49120642-49120988(+)$1	1	139	168	12.9610
((....(((((......)))))...))).	chr11:65267957-65268176(+)$1	1	46	75	15.0488
(...(((((((......))))))))))))	chr16:87957134-87957393(-)$1	1	63	92	13.4515
((((((.((((......))))))))))).	chr16:89547133-89547430(-)$1	1	87	116	13.3780
.(((.((((((......)))).)).))).	chr11:65268076-65268281(+)$1	1	43	72	11.9653
(((((((....(((...))))))))))))	chr7:29252930-29253193(+)$1	1	90	119	10.0410
(((((..((((......)))).)))))).	chr8:9629646-9629922(+)$1	1	201	230	12.8886
((....(((((......)))))...))).	chr11:65267928-65268136(+)$1	1	75	104	15.0488
(((((((((.(......).))))))))))	chr7:158212678-158212958(-)$1	1	120	149	16.3612
.(((.((((((......)))).)).))).	chr11:65268081-65268308(+)$1	1	38	67	11.9653
((((((((.((......)).))..)))))	chr16:89433330-89433612(-)$1	1	79	108	12.2945
(((((((((((.(...).)))))))))))	chr7:157633676-157633923(-)$1	1	135	164	11.9791
(...(((((.(......))))))....))	chr1:146671410-146671734(-)$1	1	74	103	13.4208
((((....(((......)))..)))))))	chrX:20268830-20269092(-)$1	1	116	145	12.2910
...(((((.((......)))))))..)))	chr20:36138028-36138275(-)$1	1	25	54	12.4770
(((.(.((.((......)).)).).))).	chr11:65268033-65268238(+)$1	1	116	145	15.2996

#PSSM
c : 0.26	= : 0.16	d : 0.09	e : 0.09	g : 0.09	f : 0.07	: : 0.05	b : 0.03	i : 0.03	$ : 0.03	! : 0.01	h : 0.01	
c : 0.30	= : 0.16	g : 0.09	e : 0.07	f : 0.07	d : 0.05	" : 0.05	i : 0.03	$ : 0.03	! : 0.03	# : 0.01	b : 0.01	h : 0.01	
c : 0.18	= : 0.16	# : 0.07	f : 0.07	$ : 0.05	d : 0.05	" : 0.05	e : 0.05	i : 0.05	[ : 0.05	g : 0.05	! : 0.03	b : 0.03	h : 0.01	
= : 0.15	c : 0.11	" : 0.09	e : 0.09	[ : 0.09	# : 0.07	f : 0.07	$ : 0.05	i : 0.05	g : 0.05	d : 0.03	! : 0.03	b : 0.03	h : 0.01	
= : 0.13	# : 0.11	a : 0.11	e : 0.09	f : 0.07	[ : 0.07	g : 0.07	! : 0.07	c : 0.05	" : 0.05	i : 0.05	$ : 0.03	d : 0.01	b : 0.01	
= : 0.13	# : 0.11	[ : 0.11	c : 0.09	! : 0.09	i : 0.07	e : 0.07	g : 0.07	" : 0.05	f : 0.05	b : 0.05	$ : 0.03	d : 0.01	
b : 0.22	e : 0.16	= : 0.13	[ : 0.09	c : 0.07	i : 0.05	# : 0.05	! : 0.05	$ : 0.03	g : 0.03	" : 0.01	d : 0.01	f : 0.01	
d : 0.20	b : 0.18	e : 0.16	= : 0.13	# : 0.07	c : 0.07	i : 0.03	g : 0.03	[ : 0.01	f : 0.01	$ : 0.01	! : 0.01	
d : 0.20	[ : 0.18	e : 0.13	c : 0.13	= : 0.11	! : 0.07	i : 0.03	g : 0.03	# : 0.03	b : 0.01	f : 0.01	
b : 0.22	d : 0.20	c : 0.13	[ : 0.11	e : 0.09	! : 0.07	i : 0.03	g : 0.03	= : 0.03	f : 0.01	# : 0.01	
b : 0.22	d : 0.20	a : 0.18	c : 0.13	e : 0.09	i : 0.03	g : 0.03	= : 0.03	f : 0.01	# : 0.01	
o : 0.88	c : 0.05	i : 0.01	a : 0.01	[ : 0.01	
o : 0.88	n : 0.05	i : 0.01	c : 0.01	a : 0.01	
o : 0.88	n : 0.05	i : 0.01	c : 0.01	l : 0.01	
o : 0.88	n : 0.05	l : 0.05	
o : 0.88	n : 0.05	l : 0.05	
o : 0.88	n : 0.05	l : 0.03	a : 0.01	
b : 0.22	d : 0.20	a : 0.20	c : 0.15	e : 0.09	g : 0.03	i : 0.01	f : 0.01	= : 0.01	] : 0.01	
b : 0.24	d : 0.20	c : 0.15	] : 0.13	e : 0.11	2 : 0.03	g : 0.03	= : 0.03	i : 0.01	f : 0.01	
d : 0.20	c : 0.18	e : 0.15	] : 0.15	= : 0.07	2 : 0.05	b : 0.05	i : 0.03	g : 0.03	f : 0.01	3 : 0.01	
d : 0.20	e : 0.16	b : 0.16	= : 0.09	2 : 0.07	c : 0.07	i : 0.05	] : 0.03	g : 0.03	4 : 0.03	f : 0.01	3 : 0.01	
e : 0.16	= : 0.15	2 : 0.13	b : 0.13	] : 0.09	i : 0.07	c : 0.07	g : 0.07	4 : 0.03	d : 0.01	f : 0.01	3 : 0.01	
= : 0.15	] : 0.13	2 : 0.11	e : 0.11	i : 0.07	c : 0.07	g : 0.07	3 : 0.07	b : 0.05	f : 0.03	4 : 0.03	d : 0.01	a : 0.01	h : 0.01	
= : 0.15	e : 0.11	g : 0.09	a : 0.09	c : 0.07	i : 0.07	3 : 0.07	d : 0.05	f : 0.05	b : 0.05	4 : 0.05	] : 0.03	2 : 0.03	h : 0.01	
= : 0.15	] : 0.15	c : 0.09	e : 0.09	i : 0.07	f : 0.07	g : 0.07	3 : 0.07	d : 0.05	b : 0.05	2 : 0.03	4 : 0.03	h : 0.01	
c : 0.28	= : 0.15	i : 0.07	] : 0.07	e : 0.07	f : 0.07	g : 0.07	b : 0.05	2 : 0.03	4 : 0.03	d : 0.03	h : 0.01	
c : 0.28	= : 0.15	e : 0.09	d : 0.07	f : 0.07	g : 0.07	i : 0.05	4 : 0.05	] : 0.05	b : 0.03	3 : 0.01	h : 0.01	
c : 0.28	= : 0.15	g : 0.09	f : 0.07	d : 0.05	b : 0.05	i : 0.05	e : 0.05	3 : 0.03	: : 0.03	4 : 0.03	] : 0.03	h : 0.01	
: : 0.16	= : 0.15	d : 0.09	] : 0.09	2 : 0.09	3 : 0.05	c : 0.05	f : 0.05	g : 0.05	i : 0.03	e : 0.03	4 : 0.01	C : 0.01	a : 0.01	b : 0.01	h : 0.01	

#score	710.1892282785413
#seq	53
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_UTR_m1_run2.txt

#BEAR
[eeeeevvvvvvvvvvvvveeeee	chr11:62609065-62609282(-)$1	217	153	177	23.5762
iiiiiiiitttttttttttiiiii	chr17:8076668-8076890(-)$1	222	80	104	22.3663
gggggggtttttttttttgggggg	chr17:8076729-8076934(-)$1	205	125	149	24.1458
[eeeeevvvvvvvvvvvvveeeee	chr11:62609033-62609240(-)$1	207	111	135	23.5762
ffff[bbvvvvvvvvvvvvvbb22	chr15:44057563-44057815(+)$1	252	103	127	20.9280
iieeeeeuuuuuuuuuuuueeeee	chr11:122929556-122929776(-)$1	220	29	53	23.8997
ceeeee[assssssssssaeeeee	chr17:27047520-27047734(+)$1	214	126	150	16.8397
ccddddyyyyyyyyyyyyyyyydd	chr4:74283238-74283458(+)$1	220	21	45	19.5639
gggggggtttttttttttgggggg	chr17:8076705-8076908(-)$1	203	99	123	24.1458
eeee!!avvvvvvvvvvvvva22e	chr5:180670238-180670479(-)$1	241	29	53	22.4088
FFddddwwwwwwwwwwwwwwdddd	chr2:216230127-216230341(-)$1	214	11	35	19.7436
ddddddyyyyyyyyyyyyyyyydd	chr11:93466568-93466783(-)$1	215	170	194	19.2910
%%%cccvvvvvvvvvvvvvcccgg	chr15:25227082-25227299(+)$1	217	104	128	20.8157
gggggggtttttttttttgggggg	chr17:8076734-8076940(-)$1	206	131	155	24.1458
!!a[cccvvvvvvvvvvvvvccc]	chr4:74280719-74280980(+)$1	261	93	117	23.0173
gggggggtttttttttttgggggg	chr17:8076740-8076946(-)$1	206	137	161	24.1458
gggggggtttttttttttgggggg	chr17:8076690-8076892(-)$1	202	83	107	24.1458
!!a[cccvvvvvvvvvvvvvccc]	chr4:74280704-74280919(+)$1	215	108	132	23.0173
!!eeeeeuuuuuuuuuuuueeeee	chr3:195791077-195791303(-)$1	226	166	190	24.0922
ggggggawwwwwwwwwwwwwwa]g	chr19:5140309-5140588(+)$1	279	132	156	21.7806
gggggggtttttttttttgggggg	chr17:8076761-8076969(-)$1	208	160	184	24.1458
ggggggguuuuuuuuuuuuggggg	chr11:122929542-122929749(-)$1	207	2	26	24.2344
gggggggtttttttttttgggggg	chr17:8076721-8076924(-)$1	203	115	139	24.1458
ceeeee[assssssssssaeeeee	chr17:27047506-27047720(+)$1	214	140	164	16.8397
gggggggtttttttttttgggggg	chr17:8076692-8076898(-)$1	206	89	113	24.1458
dfffffftttttttttttffffff	chr19:51302223-51302450(-)$1	227	179	203	22.3254
ceeeee[assssssssssaeeeee	chr17:27047485-27047706(+)$1	221	161	185	16.8397
gggggggtttttttttttgggggg	chr17:8076769-8076972(-)$1	203	163	187	24.1458
gggggggtttttttttttgggggg	chr17:8076708-8076912(-)$1	204	103	127	24.1458
::eeeeeuuuuuuuuuuuueeeee	chr19:49993159-49993376(+)$1	217	79	103	21.7564
ee[dddduuuuuuuuuuuudddd]	chr2:216229576-216229807(-)$1	231	110	134	22.1811
eee!!bbtttttttttttbb22ee	chr4:74272245-74272447(+)$1	202	6	30	21.8982
gggggggtttttttttttgggggg	chr17:8076712-8076914(-)$1	202	105	129	24.1458
gggggggtttttttttttgggggg	chr17:8076698-8076905(-)$1	207	96	120	24.1458
f[ayyyyyyyyyyyyyyyyaffff	chr3:133473253-133473498(+)$1	245	92	116	19.9614
gggggggtttttttttttgggggg	chr17:8076716-8076921(-)$1	205	112	136	24.1458
bb[cccvvvvvvvvvvvvvccc]b	chr12:9245960-9246179(-)$1	219	107	131	21.7400
"ffffffvvvvvvvvvvvvvffff	chr4:74283154-74283398(+)$1	244	27	51	22.2369
!!bb[bbvvvvvvvvvvvvvbbbb	chr3:195789624-195789903(-)$1	279	173	197	20.6169
!!a[cccvvvvvvvvvvvvvccc]	chr4:74280662-74280873(+)$1	211	150	174	23.0173
gggggggtttttttttttgggggg	chr17:8076746-8076961(-)$1	215	152	176	24.1458
[eeeeevvvvvvvvvvvvveeeee	chr11:62609096-62609311(-)$1	215	182	206	23.5762
ggggggawwwwwwwwwwwwwwa]g	chr19:5140264-5140509(+)$1	245	177	201	21.7806
iieeeeeuuuuuuuuuuuueeeee	chr11:122929549-122929756(-)$1	207	9	33	23.8997
[eeeeevvvvvvvvvvvvveeeee	chr11:62609040-62609245(-)$1	205	116	140	23.5762
:fffffftttttttttttffffff	chr3:133495827-133496077(+)$1	250	170	194	21.5439
[eeeeevvvvvvvvvvvvveeeee	chr11:62609045-62609248(-)$1	203	119	143	23.5762
""eeeeettttttttttteeeeeh	chr4:74283726-74283948(+)$1	222	29	53	23.5902
[eeeeevvvvvvvvvvvvveeeee	chr11:62609020-62609227(-)$1	207	98	122	23.5762
iiiiiiiitttttttttttiiiii	chr17:8076772-8077000(-)$1	228	190	214	22.3663
""eeeeettttttttttteeeeeh	chr4:74283705-74283920(+)$1	215	50	74	23.5902
f[ayyyyyyyyyyyyyyyyaffff	chr3:133473238-133473448(+)$1	210	107	131	19.9614
cccyyyyyyyyyyyyyyyycccGG	chr5:180670226-180670438(-)$1	212	17	41	18.9141
gggggggtttttttttttgggggg	chr17:8076724-8076929(-)$1	205	120	144	24.1458
eee[cccuuuuuuuuuuuuccc]e	chr11:93463593-93463811(-)$1	218	162	186	23.4298
ddd[cccuuuuuuuuuuuucccdd	chr2:216232510-216232747(-)$1	237	27	51	22.5938
e[eeeeettttttttttteeeee2	chr3:133467184-133467437(+)$1	253	37	61	23.3648

#otherMatches

#Seq PSSM
accugguauugcaguacuuccagg	chr11:62609065-62609282(-)$1	217	153	177	23.5762
uaaucaggacuugcaacacccuga	chr17:8076668-8076890(-)$1	222	80	104	22.3663
aaucaggacuugcaacacccugau	chr17:8076729-8076934(-)$1	205	125	149	24.1458
accugguauugcaguacuuccagg	chr11:62609033-62609240(-)$1	207	111	135	23.5762
CCUUCACAUCUCACUAACAAGUUU	chr15:44057563-44057815(+)$1	252	103	127	20.9280
UUGUUUGGCUUACUGAUAACAGAU	chr11:122929556-122929776(-)$1	220	29	53	23.8997
UGGCCCACUGCAGUUCUUGGGGCC	chr17:27047520-27047734(+)$1	214	126	150	16.8397
UUACACCAAGAAAGUACCCCAAGU	chr4:74283238-74283458(+)$1	220	21	45	19.5639
aaucaggacuugcaacacccugau	chr17:8076705-8076908(-)$1	203	99	123	24.1458
GAGAGUUGGAAACUUUUAAAAUAU	chr5:180670238-180670479(-)$1	241	29	53	22.4088
AACUACAAGAUUGGAGAGAAGUGG	chr2:216230127-216230341(-)$1	214	11	35	19.7436
ACGGUUGCUAAACGUUAUGAAAAA	chr11:93466568-93466783(-)$1	215	170	194	19.2910
UUUGAGCUUAAAAAUGACACUCUG	chr15:25227082-25227299(+)$1	217	104	128	20.8157
aaucaggacuugcaacacccugau	chr17:8076734-8076940(-)$1	206	131	155	24.1458
GCCAAGACAUAUGAAACCACUCUA	chr4:74280719-74280980(+)$1	261	93	117	23.0173
aaucaggacuugcaacacccugau	chr17:8076740-8076946(-)$1	206	137	161	24.1458
aaucaggacuugcaacacccugau	chr17:8076690-8076892(-)$1	202	83	107	24.1458
GCCAAGACAUAUGAAACCACUCUA	chr4:74280704-74280919(+)$1	215	108	132	23.0173
AUACAGUUCUAGAUGUUAUACUGU	chr3:195791077-195791303(-)$1	226	166	190	24.0922
CUGGCCCAGAAAGAAGAUGAGGAg	chr19:5140309-5140588(+)$1	279	132	156	21.7806
aaucaggacuugcaacacccugau	chr17:8076761-8076969(-)$1	208	160	184	24.1458
UUGUUUGGCUUACUGAUAACAGAU	chr11:122929542-122929749(-)$1	207	2	26	24.2344
aaucaggacuugcaacacccugau	chr17:8076721-8076924(-)$1	203	115	139	24.1458
UGGCCCACUGCAGUUCUUGGGGCC	chr17:27047506-27047720(+)$1	214	140	164	16.8397
aaucaggacuugcaacacccugau	chr17:8076692-8076898(-)$1	206	89	113	24.1458
GUGGGGGUGUGGCUGUUUCCCCCA	chr19:51302223-51302450(-)$1	227	179	203	22.3254
UGGCCCACUGCAGUUCUUGGGGCC	chr17:27047485-27047706(+)$1	221	161	185	16.8397
aaucaggacuugcaacacccugau	chr17:8076769-8076972(-)$1	203	163	187	24.1458
aaucaggacuugcaacacccugau	chr17:8076708-8076912(-)$1	204	103	127	24.1458
ACAUUCACCAUCUUUCGUUUGAGU	chr19:49993159-49993376(+)$1	217	79	103	21.7564
UGUUAUGAUGAUGGGAAGACAUAC	chr2:216229576-216229807(-)$1	231	110	134	22.1811
AACCUAUACCCAUACAUGAUUUGU	chr4:74272245-74272447(+)$1	202	6	30	21.8982
aaucaggacuugcaacacccugau	chr17:8076712-8076914(-)$1	202	105	129	24.1458
aaucaggacuugcaacacccugau	chr17:8076698-8076905(-)$1	207	96	120	24.1458
GACUUUCUAUUAUGCUGUUGCUGU	chr3:133473253-133473498(+)$1	245	92	116	19.9614
aaucaggacuugcaacacccugau	chr17:8076716-8076921(-)$1	205	112	136	24.1458
GGUGGUGGUAAAGUAAGUAACUUC	chr12:9245960-9246179(-)$1	219	107	131	21.7400
UCUGUUUUAUCUACUAUGUUAGAC	chr4:74283154-74283398(+)$1	244	27	51	22.2369
CUAGAGGUAUUCUUUAUCAUCCCU	chr3:195789624-195789903(-)$1	279	173	197	20.6169
GCCAAGACAUAUGAAACCACUCUA	chr4:74280662-74280873(+)$1	211	150	174	23.0173
aaucaggacuugcaacacccugau	chr17:8076746-8076961(-)$1	215	152	176	24.1458
accugguauugcaguacuuccagg	chr11:62609096-62609311(-)$1	215	182	206	23.5762
CUGGCCCAGAAAGAAGAUGAGGAg	chr19:5140264-5140509(+)$1	245	177	201	21.7806
UUGUUUGGCUUACUGAUAACAGAU	chr11:122929549-122929756(-)$1	207	9	33	23.8997
accugguauugcaguacuuccagg	chr11:62609040-62609245(-)$1	205	116	140	23.5762
CUUCAUGACAGAAACACAUAUGAA	chr3:133495827-133496077(+)$1	250	170	194	21.5439
accugguauugcaguacuuccagg	chr11:62609045-62609248(-)$1	203	119	143	23.5762
UUUUCAGCUUCACCUCUUUUGAAU	chr4:74283726-74283948(+)$1	222	29	53	23.5902
accugguauugcaguacuuccagg	chr11:62609020-62609227(-)$1	207	98	122	23.5762
uaaucaggacuugcaacacccuga	chr17:8076772-8077000(-)$1	228	190	214	22.3663
UUUUCAGCUUCACCUCUUUUGAAU	chr4:74283705-74283920(+)$1	215	50	74	23.5902
GACUUUCUAUUAUGCUGUUGCUGU	chr3:133473238-133473448(+)$1	210	107	131	19.9614
GCCUUCUCCUUCGUAGUGUGGCCG	chr5:180670226-180670438(-)$1	212	17	41	18.9141
aaucaggacuugcaacacccugau	chr17:8076724-8076929(-)$1	205	120	144	24.1458
GAGUUUUAAAGGUUAAUCAAAAUU	chr11:93463593-93463811(-)$1	218	162	186	23.4298
ACUCGUGCUUUGACCCCUACACAG	chr2:216232510-216232747(-)$1	237	27	51	22.5938
GUGGGCCCUUCCACCUCUGGCCUC	chr3:133467184-133467437(+)$1	253	37	61	23.3648

#DB
.(((((.............)))))	chr11:62609065-62609282(-)$1	1	153	177	23.5762
((((((((...........)))))	chr17:8076668-8076890(-)$1	1	80	104	22.3663
(((((((...........))))))	chr17:8076729-8076934(-)$1	1	125	149	24.1458
.(((((.............)))))	chr11:62609033-62609240(-)$1	1	111	135	23.5762
((((.((.............))..	chr15:44057563-44057815(+)$1	1	103	127	20.9280
(((((((............)))))	chr11:122929556-122929776(-)$1	1	29	53	23.8997
)(((((.(..........))))))	chr17:27047520-27047734(+)$1	1	126	150	16.8397
((((((................))	chr4:74283238-74283458(+)$1	1	21	45	19.5639
(((((((...........))))))	chr17:8076705-8076908(-)$1	1	99	123	24.1458
((((..(.............)..)	chr5:180670238-180670479(-)$1	1	29	53	22.4088
((((((..............))))	chr2:216230127-216230341(-)$1	1	11	35	19.7436
))((((................))	chr11:93466568-93466783(-)$1	1	170	194	19.2910
...(((.............)))))	chr15:25227082-25227299(+)$1	1	104	128	20.8157
(((((((...........))))))	chr17:8076734-8076940(-)$1	1	131	155	24.1458
..(.(((.............))).	chr4:74280719-74280980(+)$1	1	93	117	23.0173
(((((((...........))))))	chr17:8076740-8076946(-)$1	1	137	161	24.1458
(((((((...........))))))	chr17:8076690-8076892(-)$1	1	83	107	24.1458
..(.(((.............))).	chr4:74280704-74280919(+)$1	1	108	132	23.0173
..(((((............)))))	chr3:195791077-195791303(-)$1	1	166	190	24.0922
(((((((..............).)	chr19:5140309-5140588(+)$1	1	132	156	21.7806
(((((((...........))))))	chr17:8076761-8076969(-)$1	1	160	184	24.1458
(((((((............)))))	chr11:122929542-122929749(-)$1	1	2	26	24.2344
(((((((...........))))))	chr17:8076721-8076924(-)$1	1	115	139	24.1458
)(((((.(..........))))))	chr17:27047506-27047720(+)$1	1	140	164	16.8397
(((((((...........))))))	chr17:8076692-8076898(-)$1	1	89	113	24.1458
(((((((...........))))))	chr19:51302223-51302450(-)$1	1	179	203	22.3254
)(((((.(..........))))))	chr17:27047485-27047706(+)$1	1	161	185	16.8397
(((((((...........))))))	chr17:8076769-8076972(-)$1	1	163	187	24.1458
(((((((...........))))))	chr17:8076708-8076912(-)$1	1	103	127	24.1458
..(((((............)))))	chr19:49993159-49993376(+)$1	1	79	103	21.7564
((.((((............)))).	chr2:216229576-216229807(-)$1	1	110	134	22.1811
(((..((...........))..))	chr4:74272245-74272447(+)$1	1	6	30	21.8982
(((((((...........))))))	chr17:8076712-8076914(-)$1	1	105	129	24.1458
(((((((...........))))))	chr17:8076698-8076905(-)$1	1	96	120	24.1458
(.(................)))))	chr3:133473253-133473498(+)$1	1	92	116	19.9614
(((((((...........))))))	chr17:8076716-8076921(-)$1	1	112	136	24.1458
((.(((.............))).)	chr12:9245960-9246179(-)$1	1	107	131	21.7400
.((((((.............))))	chr4:74283154-74283398(+)$1	1	27	51	22.2369
..((.((.............))))	chr3:195789624-195789903(-)$1	1	173	197	20.6169
..(.(((.............))).	chr4:74280662-74280873(+)$1	1	150	174	23.0173
(((((((...........))))))	chr17:8076746-8076961(-)$1	1	152	176	24.1458
.(((((.............)))))	chr11:62609096-62609311(-)$1	1	182	206	23.5762
(((((((..............).)	chr19:5140264-5140509(+)$1	1	177	201	21.7806
(((((((............)))))	chr11:122929549-122929756(-)$1	1	9	33	23.8997
.(((((.............)))))	chr11:62609040-62609245(-)$1	1	116	140	23.5762
.((((((...........))))))	chr3:133495827-133496077(+)$1	1	170	194	21.5439
.(((((.............)))))	chr11:62609045-62609248(-)$1	1	119	143	23.5762
..(((((...........))))))	chr4:74283726-74283948(+)$1	1	29	53	23.5902
.(((((.............)))))	chr11:62609020-62609227(-)$1	1	98	122	23.5762
((((((((...........)))))	chr17:8076772-8077000(-)$1	1	190	214	22.3663
..(((((...........))))))	chr4:74283705-74283920(+)$1	1	50	74	23.5902
(.(................)))))	chr3:133473238-133473448(+)$1	1	107	131	19.9614
(((................)))((	chr5:180670226-180670438(-)$1	1	17	41	18.9141
(((((((...........))))))	chr17:8076724-8076929(-)$1	1	120	144	24.1458
(((.(((............))).)	chr11:93463593-93463811(-)$1	1	162	186	23.4298
(((.(((............)))))	chr2:216232510-216232747(-)$1	1	27	51	22.5938
(.(((((...........))))).	chr3:133467184-133467437(+)$1	1	37	61	23.3648

#PSSM
g : 0.31	[ : 0.10	c : 0.08	e : 0.08	! : 0.08	i : 0.07	f : 0.05	d : 0.05	" : 0.05	: : 0.03	F : 0.01	% : 0.01	b : 0.01	
g : 0.31	e : 0.22	! : 0.08	i : 0.07	f : 0.07	[ : 0.05	c : 0.03	d : 0.03	" : 0.03	F : 0.01	% : 0.01	: : 0.01	b : 0.01	
e : 0.33	g : 0.31	a : 0.08	f : 0.07	d : 0.07	i : 0.03	[ : 0.03	% : 0.01	b : 0.01	c : 0.01	
g : 0.31	e : 0.29	[ : 0.08	f : 0.07	d : 0.07	y : 0.05	i : 0.03	c : 0.03	! : 0.01	b : 0.01	
g : 0.31	e : 0.28	c : 0.12	d : 0.07	f : 0.05	y : 0.05	i : 0.03	[ : 0.03	! : 0.03	
g : 0.31	e : 0.28	c : 0.12	d : 0.07	b : 0.05	f : 0.05	y : 0.05	i : 0.03	! : 0.01	
g : 0.28	v : 0.14	e : 0.12	y : 0.08	c : 0.08	b : 0.05	[ : 0.05	a : 0.05	f : 0.05	i : 0.03	w : 0.01	d : 0.01	
t : 0.36	v : 0.26	u : 0.14	y : 0.08	a : 0.05	w : 0.05	i : 0.03	
t : 0.40	v : 0.26	u : 0.14	y : 0.08	s : 0.05	w : 0.05	
t : 0.40	v : 0.26	u : 0.14	y : 0.08	s : 0.05	w : 0.05	
t : 0.40	v : 0.26	u : 0.14	y : 0.08	s : 0.05	w : 0.05	
t : 0.40	v : 0.26	u : 0.14	y : 0.08	s : 0.05	w : 0.05	
t : 0.40	v : 0.26	u : 0.14	y : 0.08	s : 0.05	w : 0.05	
t : 0.40	v : 0.26	u : 0.14	y : 0.08	s : 0.05	w : 0.05	
t : 0.40	v : 0.26	u : 0.14	y : 0.08	s : 0.05	w : 0.05	
t : 0.40	v : 0.26	u : 0.14	y : 0.08	s : 0.05	w : 0.05	
t : 0.40	v : 0.26	u : 0.14	y : 0.08	s : 0.05	w : 0.05	
t : 0.40	v : 0.26	u : 0.14	y : 0.08	s : 0.05	w : 0.05	
v : 0.26	g : 0.26	u : 0.14	y : 0.08	a : 0.05	w : 0.05	e : 0.05	t : 0.03	f : 0.03	b : 0.01	
e : 0.28	g : 0.28	v : 0.12	c : 0.08	w : 0.05	i : 0.03	y : 0.03	f : 0.03	a : 0.03	d : 0.01	b : 0.01	
e : 0.28	g : 0.28	c : 0.14	f : 0.08	i : 0.03	b : 0.03	y : 0.03	d : 0.03	w : 0.03	a : 0.01	2 : 0.01	
e : 0.28	g : 0.28	c : 0.14	f : 0.08	i : 0.03	b : 0.03	y : 0.03	2 : 0.03	d : 0.03	a : 0.03	
e : 0.29	g : 0.29	d : 0.08	f : 0.08	] : 0.07	c : 0.05	i : 0.03	2 : 0.03	b : 0.01	G : 0.01	
g : 0.33	e : 0.28	f : 0.08	d : 0.07	] : 0.07	i : 0.03	2 : 0.03	b : 0.03	h : 0.03	G : 0.01	

#score	1280.0941967555664
#seq	57
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_CDS_m2_run1.txt

#BEAR
:ccc!!gggggggooooooggggggg]ccce	chr16:31196340-31196602(+)$1	262	148	179	13.5881
fffggggggg[cccnnnnnccc]ggggggg3	chr19:10406896-10407146(+)$1	250	139	170	11.9978
[dddda!!ccc!!aooooooa22ccc22a22	chr16:31044904-31045244(+)$1	340	276	307	12.3153
::iiiiiiiii[aooooooa]iiiiiiiiib	chr16:89367077-89367339(-)$1	262	119	150	13.2434
ccc"""ffffffooooooffffff333ccc]	chr17:26940555-26940891(-)$1	336	107	138	12.0257
bb:==========oooooo==========dd	chrX:41193773-41194056(+)$1	283	140	171	14.2282
##===========nnnnn===========22	chr11:18425140-18425399(+)$1	259	207	238	12.9514
ii[eeeee!!cccooooooccc]eeeeeiii	chr9:140260656-140261004(-)$1	348	232	263	14.6260
ggggg"""eeeeeooooooeeeeeggggggg	chr11:62284959-62285221(-)$1	262	45	76	13.2859
====%%%%%%cccooooooccc=========	chr11:62300750-62301065(-)$1	315	122	153	12.2369
a[bb[ccc[eeeeeooooooeeeee]ccc]b	chr1:36348901-36349184(+)$1	283	42	73	11.6945
ffff[eeeee[bboooooobbeeeee333ff	chr2:178081487-178081730(+)$1	243	56	87	13.9448
c"""bb[a[eeeeeooooooeeeeea]bb33	chr17:7476917-7477196(+)$1	279	174	205	11.5952
$$$$ffffff[bboooooobb]ffffff22a	chr1:153615728-153615942(+)$1	214	98	129	13.5244
dddd!!eeeee[aooooooaeeeee]dddd]	chr22:50016987-50017311(-)$1	324	156	187	12.3828
ee"""gggggggoooooogggggggeeeee]	chr11:62300618-62300876(-)$1	258	182	213	12.9594
Cbb[eeeee[cccooooooccc]eeeee]bb	chr22:19838613-19838881(-)$1	268	233	264	12.2991
cc[a[dddd[cccooooooccc]dddda]cc	chrX:151123278-151123648(-)$1	370	335	366	13.9251
cc[ggggggg[cccnnnnnccc]ggggggg]	chr11:62300350-62300692(-)$1	342	10	41	12.4051
fffff[ccc"""bbnnnnnbb333ccc]fff	chr14:21967336-21967660(-)$1	324	145	176	10.7406
h[ccc[a[bb[bboooooobb]bb]a]ccch	chrM:14204-14426(-)$1	222	174	205	13.6145
!!eeeee[bb[bboooooobbbb]eeeee22	chr19:10407012-10407356(+)$1	344	143	174	13.0930
e!!a[dddd[a[aooooooa]a]dddda22e	chr20:35491638-35491911(-)$1	273	41	72	13.5302
[ffffffgggggggnnnnnggggggg333ff	chr17:80789372-80789673(+)$1	301	91	122	10.2459
""dddd[bb[cccooooooccc]bbdddd]c	chr9:140081754-140082077(-)$1	323	142	173	12.9064
##===========nnnnn===========22	chr11:18425254-18425458(+)$1	204	93	124	12.9514
[ggggggg"""bboooooobb]ggggggg]a	chr8:145106177-145106461(-)$1	284	22	53	16.1752
fff!!ccc"""bboooooobb22ccc22fff	chr16:31724662-31724956(+)$1	294	47	78	14.5757
cccbbffffff!!aooooooa22ffffff]b	chr19:49611263-49611519(+)$1	256	94	125	11.8472
e####cccddddaooooooa]dddd]cccee	chr22:19711795-19712083(+)$1	288	234	265	12.7816
==========cccooooooccc]========	chr11:294166-294395(+)$1	229	138	169	16.4198
eee!!dddd!!bboooooobb22dddd22ee	chr7:127670137-127670418(+)$1	281	118	149	13.3510
c[iiiiiiiiirrrrrrrrriiiiiiiiicc	chr11:18424452-18424660(+)$1	208	52	83	10.7364
c[ggggggg[cccoooooocccggggggg]c	chr7:127669706-127670025(+)$1	319	261	292	15.7535
====%%%%%%cccooooooccc=========	chr11:62300888-62301187(-)$1	299	244	275	12.2369
bb!!dddd"""bboooooobb4444dddd]b	chr3:49050189-49050477(+)$1	288	20	51	13.5609
eeee!!ccc!!bboooooobb22ccceeeee	chr16:89970498-89970759(+)$1	261	91	122	14.2720
cggggggg"""cccoooooocccggggggg]	chr9:94711908-94712256(-)$1	348	200	231	14.5699
fffffffffcccooooooccc333ffffff]	chr19:1416408-1416692(+)$1	284	126	157	12.3797
gggggg[ccc[cccmmmmccc]cccgggggg	chr7:127669214-127669508(+)$1	294	41	72	10.2699
##===========nnnnn===========22	chr11:18425199-18425454(+)$1	255	148	179	12.9514
cffffff[a[cccooooooccc]a]ffffff	chr8:25315646-25315947(-)$1	301	21	52	14.0257
GGffffff!!cccooooooccc]ffffff::	chr11:66391271-66391545(+)$1	274	13	44	11.2906
[a"""eeeee[bboooooobb]eeeee]acc	chr2:132044567-132044820(+)$1	253	65	96	14.7353
hh!!ccc[bb[bboooooobb]bb22ccc]h	chr7:151216370-151216699(-)$1	329	85	116	13.3041
e[accc[eeeee[aooooooa]eeeeeccc]	chrX:119007168-119007442(+)$1	274	165	196	12.8561
%%%ggggggg[bboooooobbgggggggeee	chr2:54197715-54197990(-)$1	275	172	203	13.6523
b[ggggggg!!bboooooobb22ggggggg]	chr9:101558485-101558795(-)$1	310	247	278	16.0602
ii$$$$$ccc[bboooooobbccc22iiiii	chr22:19431683-19432009(-)$1	326	249	280	14.0486

#otherMatches

#Seq PSSM
AGGUGGCAUGGGGUAGGUGUCUCAUGAGCCA	chr16:31196340-31196602(+)$1	262	148	179	13.5881
Ugggcggcgcggcggggggcgcggcgcugcu	chr19:10406896-10407146(+)$1	250	139	170	11.9978
GGGGACGGGCGGACGAACUGGAACGCAGGAC	chr16:31044904-31045244(+)$1	340	276	307	12.3153
UGACACCCUGGUCUCUGGUGCCUGGGGUGUG	chr16:89367077-89367339(-)$1	262	119	150	13.2434
AGGGAGUGCCUAGUAAGAUGGGUGGAACCUG	chr17:26940555-26940891(-)$1	336	107	138	12.0257
CUGGAGGCCCUUUUGGCUUGGAGGGCUUCGG	chrX:41193773-41194056(+)$1	283	140	171	14.2282
GUGGUUGAGAGGUAAUAAAUCUUUCAAUUUG	chr11:18425140-18425399(+)$1	259	207	238	12.9514
AGCGGCUGGGGCUGGCAGGAGCACAGCCCUC	chr9:140260656-140261004(-)$1	348	232	263	14.6260
UGUUUCAGGGGGUGUCAGUGCCCCAGACAUC	chr11:62284959-62285221(-)$1	262	45	76	13.2859
GUCUCAACAGGGCGUGAGGGCCAGACACCAA	chr11:62300750-62301065(-)$1	315	122	153	12.2369
CGAGAGUGUGGGGUACCUAGGCCCCUCACGC	chr1:36348901-36349184(+)$1	283	42	73	11.6945
UAAGUUGAAUAUAUUAUUUUAAUUCAUUUCU	chr2:178081487-178081730(+)$1	243	56	87	13.9448
CGGGCAACGCGAGGGGGGGGCUUCGGCUGGA	chr17:7476917-7477196(+)$1	279	174	205	11.5952
AAUCGGUGGUAGAGGUUAGUCAGCUACCAAC	chr1:153615728-153615942(+)$1	214	98	129	13.5244
CAGGACGGGGCAcagcagaggccucaccugc	chr22:50016987-50017311(-)$1	324	156	187	12.3828
GCCUCUGCUCCCCAAAUUGGGGGUAGCAUCA	chr11:62300618-62300876(-)$1	258	182	213	12.9594
UGGCCUGUGUGGCUUGAGCGCCCCAUAGUCC	chr22:19838613-19838881(-)$1	268	233	264	12.2991
CCCGAUUGUGAGGGCAGUACCUGGCAGCAGG	chrX:151123278-151123648(-)$1	370	335	366	13.9251
CAAAUUGGGGGUAGCAUCACUGGCCCCAGUG	chr11:62300350-62300692(-)$1	342	10	41	12.4051
GUUGGUGUCAAAGGAAAUCCCCAAGGCUUCA	chr14:21967336-21967660(-)$1	324	145	176	10.7406
UGCGGGGGCUUUGUAUGAUUAUGGGCGUUGA	chrM:14204-14426(-)$1	222	174	205	13.6145
AGGCCGUGUGUCUGAACGGAgcgggcggcgg	chr19:10407012-10407356(+)$1	344	143	174	13.0930
GAGGUGGGCCGAGAGCAGCCGCAGCCCCAGC	chr20:35491638-35491911(-)$1	273	41	72	13.5302
CCCCGGGUGAGGCAGGAAGUGUCUCGGGUCU	chr17:80789372-80789673(+)$1	301	91	122	10.2459
CUUGUGAGUAGUCUGUCCCGAUGGCCAUGCC	chr9:140081754-140082077(-)$1	323	142	173	12.9064
GUGGUUGAGAGGUAAUAAAUCUUUCAAUUUG	chr11:18425254-18425458(+)$1	204	93	124	12.9514
CGCAGGUGACAGGGAGGGGCCACGCCUGCAC	chr8:145106177-145106461(-)$1	284	22	53	16.1752
GGAGAUCCGUAGCUCAGACGCCAGGACAUCC	chr16:31724662-31724956(+)$1	294	47	78	14.5757
CGCGCCCCCUGAUGAUGGGCCUCCAGGGGAG	chr19:49611263-49611519(+)$1	256	94	125	11.8472
AACACGGGCCUGCAAACUCGACAGGACCCUG	chr22:19711795-19712083(+)$1	288	234	265	12.7816
UGUCGGGGAUCUCCAGAGUGAGCGUCUCCGG	chr11:294166-294395(+)$1	229	138	169	16.4198
CAGGUAUUCAAAGGCCCCGCUAGGGAUGACU	chr7:127670137-127670418(+)$1	281	118	149	13.3510
AGUUCACCCAUUAAGCUGUCAUGGGUGGGUC	chr11:18424452-18424660(+)$1	208	52	83	10.7364
GCUCAGGCCAUGGAAGGAGCCAGGCCUGAUC	chr7:127669706-127670025(+)$1	319	261	292	15.7535
GUCUCAACAGGGCGUGAGGGCCAGACACCAA	chr11:62300888-62301187(-)$1	299	244	275	12.2369
GGUCGUGUCAAGGUUGUCCCCAUCAACACUC	chr3:49050189-49050477(+)$1	288	20	51	13.5609
cuuuggacccaaugcugaaauaagguaaaga	chr16:89970498-89970759(+)$1	261	91	122	14.2720
CGGCGCCCAUGCUCCUGAACGAGGGGCGCCA	chr9:94711908-94712256(-)$1	348	200	231	14.5699
AUCUAAGGCCCCGUGCCUGGGUAAGCCUUGU	chr19:1416408-1416692(+)$1	284	126	157	12.3797
ACGUGGUAGGAACAGGCUUGUACUUUCGCGU	chr7:127669214-127669508(+)$1	294	41	72	10.2699
GUGGUUGAGAGGUAAUAAAUCUUUCAAUUUG	chr11:18425199-18425454(+)$1	255	148	179	12.9514
UGGGACAGAGUGCGUGCGUGUGGUGUGUCCC	chr8:25315646-25315947(-)$1	301	21	52	14.0257
GUUUGGUGAGUUUGGGUUGAGAACACUGAAG	chr11:66391271-66391545(+)$1	274	13	44	11.2906
UGUCUGGGCUGCUGUACAAGGGAGUCCCCUU	chr2:132044567-132044820(+)$1	253	65	96	14.7353
CUGAGGAGGCCGCCAAGAUGCCGCAGUCCAA	chr7:151216370-151216699(-)$1	329	85	116	13.3041
UUGAUCGUUACUAUGUGUCAAAGGUAAGAUG	chrX:119007168-119007442(+)$1	274	165	196	12.8561
ACAAGCUGCUGCCCUACGCGGAGCGGCUAGA	chr2:54197715-54197990(-)$1	275	172	203	13.6523
GAGGCGGGCAACACCGCACUGCAGUUCGCCG	chr9:101558485-101558795(-)$1	310	247	278	16.0602
GCUUCCUCAGUCUGUUUCAAGUUGCUGUUGC	chr22:19431683-19432009(-)$1	326	249	280	14.0486

#DB
.(((..(((((((......))))))).)))(	chr16:31196340-31196602(+)$1	1	148	179	13.5881
((((((((((.(((.....))).))))))).	chr19:10406896-10407146(+)$1	1	139	170	11.9978
.(((((..(((..(......)..)))..)..	chr16:31044904-31045244(+)$1	1	276	307	12.3153
..(((((((((.(......).)))))))))(	chr16:89367077-89367339(-)$1	1	119	150	13.2434
(((...((((((......))))))...))).	chr17:26940555-26940891(-)$1	1	107	138	12.0257
)).((((((((((......))))))))))((	chrX:41193773-41194056(+)$1	1	140	171	14.2282
..(((((((((((.....)))))))))))..	chr11:18425140-18425399(+)$1	1	207	238	12.9514
((.(((((..(((......))).))))))))	chr9:140260656-140261004(-)$1	1	232	263	14.6260
(((((...(((((......))))))))))))	chr11:62284959-62285221(-)$1	1	45	76	13.2859
((((......(((......))))))))))))	chr11:62300750-62301065(-)$1	1	122	153	12.2369
(.((.(((.(((((......))))).))).)	chr1:36348901-36349184(+)$1	1	42	73	11.6945
((((.(((((.((......)))))))...))	chr2:178081487-178081730(+)$1	1	56	87	13.9448
(...((.(.(((((......)))))).))..	chr17:7476917-7477196(+)$1	1	174	205	11.5952
....((((((.((......)).))))))..)	chr1:153615728-153615942(+)$1	1	98	129	13.5244
((((..(((((.(......)))))).)))).	chr22:50016987-50017311(-)$1	1	156	187	12.3828
((...(((((((......)))))))))))).	chr11:62300618-62300876(-)$1	1	182	213	12.9594
)((.(((((.(((......))).))))).))	chr22:19838613-19838881(-)$1	1	233	264	12.2991
((.(.((((.(((......))).))))).))	chrX:151123278-151123648(-)$1	1	335	366	13.9251
((.(((((((.(((.....))).))))))).	chr11:62300350-62300692(-)$1	1	10	41	12.4051
(((((.(((...((.....))...))).)))	chr14:21967336-21967660(-)$1	1	145	176	10.7406
(.(((.(.((.((......)).)).).))))	chrM:14204-14426(-)$1	1	174	205	13.6145
..(((((.((.((......)))).)))))..	chr19:10407012-10407356(+)$1	1	143	174	13.0930
(..(.((((.(.(......).).)))))..)	chr20:35491638-35491911(-)$1	1	41	72	13.5302
.(((((((((((((.....)))))))...))	chr17:80789372-80789673(+)$1	1	91	122	10.2459
..((((.((.(((......))).)))))).)	chr9:140081754-140082077(-)$1	1	142	173	12.9064
..(((((((((((.....)))))))))))..	chr11:18425254-18425458(+)$1	1	93	124	12.9514
.(((((((...((......)).))))))).)	chr8:145106177-145106461(-)$1	1	22	53	16.1752
(((..(((...((......))..)))..)))	chr16:31724662-31724956(+)$1	1	47	78	14.5757
)))((((((((..(......)..)))))).)	chr19:49611263-49611519(+)$1	1	94	125	11.8472
(....((((((((......).)))).)))))	chr22:19711795-19712083(+)$1	1	234	265	12.7816
(((((((((((((......))).))))))))	chr11:294166-294395(+)$1	1	138	169	16.4198
(((..((((..((......))..))))..))	chr7:127670137-127670418(+)$1	1	118	149	13.3510
(.(((((((((.........)))))))))))	chr11:18424452-18424660(+)$1	1	52	83	10.7364
(.(((((((.(((......)))))))))).)	chr7:127669706-127670025(+)$1	1	261	292	15.7535
((((......(((......))))))))))))	chr11:62300888-62301187(-)$1	1	244	275	12.2369
((..((((...((......))....)))).)	chr3:49050189-49050477(+)$1	1	20	51	13.5609
((((..(((..((......))..))))))))	chr16:89970498-89970759(+)$1	1	91	122	14.2720
((((((((...(((......)))))))))).	chr9:94711908-94712256(-)$1	1	200	231	14.5699
((((((((((((......)))...)))))).	chr19:1416408-1416692(+)$1	1	126	157	12.3797
((((((.(((.(((....))).)))))))))	chr7:127669214-127669508(+)$1	1	41	72	10.2699
..(((((((((((.....)))))))))))..	chr11:18425199-18425454(+)$1	1	148	179	12.9514
(((((((.(.(((......))).).))))))	chr8:25315646-25315947(-)$1	1	21	52	14.0257
((((((((..(((......))).))))))..	chr11:66391271-66391545(+)$1	1	13	44	11.2906
.(...(((((.((......)).))))).)))	chr2:132044567-132044820(+)$1	1	65	96	14.7353
((..(((.((.((......)).))..))).)	chr7:151216370-151216699(-)$1	1	85	116	13.3041
(.((((.(((((.(......).)))))))).	chrX:119007168-119007442(+)$1	1	165	196	12.8561
...(((((((.((......))))))))))))	chr2:54197715-54197990(-)$1	1	172	203	13.6523
(.(((((((..((......))..))))))).	chr9:101558485-101558795(-)$1	1	247	278	16.0602
((.....(((.((......)))))..)))))	chr22:19431683-19432009(-)$1	1	249	280	14.0486

#PSSM
c : 0.18	e : 0.12	f : 0.10	[ : 0.08	b : 0.06	# : 0.06	= : 0.06	: : 0.04	i : 0.04	g : 0.04	h : 0.04	a : 0.02	$ : 0.02	d : 0.02	C : 0.02	! : 0.02	" : 0.02	G : 0.02	% : 0.02	
f : 0.14	[ : 0.12	c : 0.10	# : 0.08	g : 0.08	b : 0.06	= : 0.06	e : 0.06	d : 0.04	i : 0.04	" : 0.04	! : 0.04	: : 0.02	$ : 0.02	G : 0.02	a : 0.02	h : 0.02	% : 0.02	
f : 0.16	= : 0.12	g : 0.12	c : 0.08	d : 0.06	[ : 0.06	" : 0.06	e : 0.06	! : 0.06	i : 0.04	b : 0.04	$ : 0.04	: : 0.02	# : 0.02	a : 0.02	% : 0.02	
g : 0.18	= : 0.14	f : 0.12	" : 0.08	! : 0.08	c : 0.06	d : 0.06	e : 0.06	i : 0.04	b : 0.04	$ : 0.04	a : 0.04	[ : 0.02	# : 0.02	
g : 0.18	f : 0.12	! : 0.10	= : 0.10	[ : 0.08	d : 0.06	" : 0.06	e : 0.06	c : 0.06	i : 0.04	% : 0.04	b : 0.04	# : 0.02	$ : 0.02	
g : 0.18	f : 0.12	= : 0.10	e : 0.10	c : 0.10	d : 0.10	! : 0.06	i : 0.04	" : 0.04	% : 0.04	[ : 0.04	a : 0.02	b : 0.02	$ : 0.02	
g : 0.18	f : 0.14	e : 0.12	c : 0.12	= : 0.10	[ : 0.08	d : 0.08	i : 0.04	% : 0.04	! : 0.02	" : 0.02	a : 0.02	$ : 0.02	
g : 0.20	c : 0.14	e : 0.12	f : 0.10	= : 0.10	d : 0.08	[ : 0.08	i : 0.04	% : 0.04	! : 0.02	" : 0.02	a : 0.02	b : 0.02	
g : 0.16	e : 0.12	c : 0.10	= : 0.10	f : 0.08	d : 0.08	b : 0.08	" : 0.08	i : 0.04	! : 0.04	% : 0.04	[ : 0.04	a : 0.02	
e : 0.14	g : 0.12	[ : 0.12	= : 0.10	! : 0.10	" : 0.10	c : 0.08	f : 0.06	b : 0.06	i : 0.04	% : 0.04	d : 0.02	
c : 0.24	[ : 0.22	e : 0.10	" : 0.10	= : 0.08	g : 0.06	! : 0.06	i : 0.04	f : 0.04	a : 0.02	d : 0.02	
c : 0.30	b : 0.28	= : 0.08	e : 0.08	g : 0.06	[ : 0.06	! : 0.04	f : 0.02	" : 0.02	d : 0.02	r : 0.02	
b : 0.30	c : 0.28	a : 0.08	= : 0.08	o : 0.06	e : 0.06	g : 0.04	! : 0.04	r : 0.02	[ : 0.02	
o : 0.69	c : 0.08	a : 0.06	n : 0.06	e : 0.04	b : 0.02	g : 0.02	r : 0.02	
o : 0.81	n : 0.14	r : 0.02	m : 0.02	
o : 0.81	n : 0.14	r : 0.02	m : 0.02	
o : 0.81	n : 0.14	r : 0.02	m : 0.02	
o : 0.81	n : 0.14	r : 0.02	m : 0.02	
o : 0.75	n : 0.08	= : 0.06	c : 0.04	f : 0.02	g : 0.02	r : 0.02	
b : 0.30	c : 0.28	o : 0.12	a : 0.08	= : 0.08	g : 0.06	f : 0.02	e : 0.02	r : 0.02	
c : 0.30	b : 0.30	= : 0.08	e : 0.08	g : 0.06	a : 0.06	] : 0.06	f : 0.02	i : 0.02	
c : 0.28	] : 0.14	2 : 0.12	e : 0.10	g : 0.08	= : 0.08	i : 0.04	3 : 0.04	f : 0.02	b : 0.02	a : 0.02	d : 0.02	4 : 0.02	
] : 0.20	e : 0.14	g : 0.12	2 : 0.12	= : 0.12	b : 0.06	c : 0.06	i : 0.04	f : 0.04	3 : 0.04	d : 0.02	4 : 0.02	
g : 0.20	e : 0.18	= : 0.14	c : 0.10	f : 0.08	d : 0.08	b : 0.06	i : 0.04	3 : 0.04	] : 0.02	4 : 0.02	a : 0.02	
g : 0.22	e : 0.18	= : 0.14	c : 0.10	f : 0.08	d : 0.08	i : 0.04	] : 0.04	2 : 0.04	3 : 0.02	b : 0.02	4 : 0.02	
g : 0.22	= : 0.14	e : 0.14	f : 0.10	d : 0.10	c : 0.08	] : 0.06	i : 0.04	a : 0.04	2 : 0.04	3 : 0.02	
g : 0.18	= : 0.14	e : 0.14	d : 0.12	f : 0.10	c : 0.08	] : 0.06	i : 0.06	3 : 0.06	2 : 0.04	
g : 0.18	c : 0.14	= : 0.14	e : 0.10	f : 0.10	2 : 0.06	i : 0.06	d : 0.06	3 : 0.04	a : 0.04	] : 0.04	b : 0.02	
g : 0.16	c : 0.14	= : 0.14	f : 0.12	i : 0.08	e : 0.08	2 : 0.06	d : 0.06	a : 0.04	3 : 0.04	] : 0.04	b : 0.02	
c : 0.14	2 : 0.14	] : 0.14	g : 0.12	f : 0.12	e : 0.10	i : 0.06	= : 0.06	d : 0.04	3 : 0.02	b : 0.02	: : 0.02	
] : 0.16	e : 0.12	2 : 0.10	b : 0.10	f : 0.10	c : 0.10	= : 0.06	3 : 0.04	i : 0.04	g : 0.04	a : 0.04	h : 0.04	d : 0.02	: : 0.02	

#score	644.1676456128696
#seq	49
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_CDS_m1_run2.txt

#BEAR
=========[cccmmmmccc]========	chrM:14368-14605(-)$1	237	106	135	12.6033
iiiiiii[ddddnnnnnddddiiiiiiii	chr4:78740041-78740317(-)$1	276	36	65	10.7318
eee####ccccccmmmmccc]ccceeeee	chr19:18547567-18547863(-)$1	296	59	88	10.9619
b!!bb[bbbb[bbmmmmbbbb]bb333bb	chr12:123997699-123998012(-)$1	313	56	85	9.4627
g[abb[cccddddmmmmdddd]ccc]bb5	chr17:76117512-76117838(-)$1	326	83	112	11.1957
ddd"""dddd[bbmmmmbb]dddd333dd	chr5:154135292-154135583(+)$1	291	163	192	9.5106
iiiiiiiii!!bbmmmmbb4444iiiiii	chr1:2160892-2161165(+)$1	273	0	29	11.3681
e$$$$$ccc[cccmmmmccc]ccc4444e	chr11:63743596-63743845(+)$1	249	134	163	11.4384
##a[ccc[eeeeemmmmeeeee4444ccc	chr1:22160236-22160479(-)$1	243	15	44	9.9676
eeeeeccc[cccnnnnnccc22ccc]eee	chr19:4033476-4033760(+)$1	284	150	179	10.0326
eeee[ccc!!ddddllldddd4444ccc]	chr6:31601552-31601835(+)$1	283	31	60	11.0170
hh[bb!!ddddoooooodddd]bb4444h	chr1:22155427-22155672(-)$1	245	50	79	11.5490
========ddddnnnnndddd22======	chr17:73892406-73892773(-)$1	367	329	358	11.7316
e[bb$$$$$ddddoooooodddd333bbe	chr16:29817999-29818247(+)$1	248	23	52	9.9838
ffffffbbddddnnnnndddd]bb22fff	chrX:152954103-152954376(+)$1	273	91	120	9.1082
ggggg[ccc!!bboooooobb]ccc]ggg	chr19:803389-803662(+)$1	273	19	48	10.3795
ffffffffcccooooooccc333ffffff	chr19:1416432-1416664(+)$1	232	103	132	9.5434
ccc==========mmmm==========::	chr21:38119978-38120204(+)$1	226	130	159	9.5222
gggggg####cccmmmmccc4444ggggg	chr22:21983344-21983575(-)$1	231	28	57	11.9076
"""bb!!ddddoooooodddd22bb333e	chrX:153589595-153589864(-)$1	269	21	50	11.7606
b"""bb[ddddoooooodddd]bb]bb]b	chr22:50018397-50018654(-)$1	257	103	132	10.3371
cbb[ccc"""cccmmmmccc4444cccbb	chr19:59060423-59060667(+)$1	244	172	201	11.1430
eeeee[ccc!!ccclllccc22ccceeee	chr19:4037216-4037476(+)$1	260	193	222	10.3407
eeeee!!a[ddddmmmmdddd]a22eeee	chr22:50016658-50016910(-)$1	252	151	180	11.2975

#otherMatches

#Seq PSSM
AUUUAGGGGGAAUGAUGGUUGUCUUUGGA	chrM:14368-14605(-)$1	237	106	135	12.6033
GGGGGCGGCGGGGCUGACCCGCGUCUCUU	chr4:78740041-78740317(-)$1	276	36	65	10.7318
CCCAACGACCUCGUGUUCGAUGGUGGGCG	chr19:18547567-18547863(-)$1	296	59	88	10.9619
CCUCCCGCCCACCUCUCGGGGAGCCAAGG	chr12:123997699-123998012(-)$1	313	56	85	9.4627
GGAGCGUGUGCGGGAGGCUGCGGCAGGCG	chr17:76117512-76117838(-)$1	326	83	112	11.1957
GGGGAGCCGGACGGCAGCGCUCGGAGACC	chr5:154135292-154135583(+)$1	291	163	192	9.5106
GGGCUGCUGGUGCCCGAGCUCUACAGCAG	chr1:2160892-2161165(+)$1	273	0	29	11.3681
CCUUCCUCCUGCCAGCGGGCUGGAUCCUG	chr11:63743596-63743845(+)$1	249	134	163	11.4384
CUGUGACUGUCAUGUUGAUGGCCUAUGUC	chr1:22160236-22160479(-)$1	243	15	44	9.9676
GGUCUCGGUGGCACCCCGCUUCCUGCAGA	chr19:4033476-4033760(+)$1	284	150	179	10.0326
UUAGGGUCAGUGGCAGAGCCAGGCAGAUG	chr6:31601552-31601835(+)$1	283	31	60	11.0170
GGAGCCCCGUGUGCCCCCAUGUGCCCAAC	chr1:22155427-22155672(-)$1	245	50	79	11.5490
UCGUGGGUCUgccaggcgcaguggcucac	chr17:73892406-73892773(-)$1	367	329	358	11.7316
AUGUUCCCGGUGUUUCCUUGCACGCUGCU	chr16:29817999-29818247(+)$1	248	23	52	9.9838
ACGCGCCAGAUGGACUUCAUCAUGUCGUG	chrX:152954103-152954376(+)$1	273	91	120	9.1082
GCUCAGGCUGCCCUGCCGUGGAAGUGUGG	chr19:803389-803662(+)$1	273	19	48	10.3795
UCUAAGGCCCCGUGCCUGGGUAAGCCUUG	chr19:1416432-1416664(+)$1	232	103	132	9.5434
gcccgcgcggcacccgagugcugcgcgcc	chr21:38119978-38120204(+)$1	226	130	159	9.5222
UGGGGGAGUAGGGGAAGUUCGAUGCCCCC	chr22:21983344-21983575(-)$1	231	28	57	11.9076
GCAGCGGUGCCCUGCAAGGUGGAGCCAGG	chrX:153589595-153589864(-)$1	269	21	50	11.7606
GGGGAGGUGCUGAGGAGGGCAGCUACGAC	chr22:50018397-50018654(-)$1	257	103	132	10.3371
GCCAUUGUCAAGGUAAGCCUGUCCCAAGG	chr19:59060423-59060667(+)$1	244	172	201	11.1430
ACGAGAUCGAGUACCUGGUGGACGGCUCG	chr19:4037216-4037476(+)$1	260	193	222	10.3407
GGGACAUUCUGGAAGGUUCCACAUGGUCU	chr22:50016658-50016910(-)$1	252	151	180	11.2975

#DB
(((((((((.(((....))).))))))))	chrM:14368-14605(-)$1	1	106	135	12.6033
(((((((.((((.....))))))))))))	chr4:78740041-78740317(-)$1	1	36	65	10.7318
(((....((((((....))).))))))))	chr19:18547567-18547863(-)$1	1	59	88	10.9619
(..((.((((.((....)))).))...))	chr12:123997699-123998012(-)$1	1	56	85	9.4627
(.(((.(((((((....)))).))).)).	chr17:76117512-76117838(-)$1	1	83	112	11.1957
(((...((((.((....)).))))...))	chr5:154135292-154135583(+)$1	1	163	192	9.5106
(((((((((..((....))....))))))	chr1:2160892-2161165(+)$1	1	0	29	11.3681
(.....(((.(((....))).)))....)	chr11:63743596-63743845(+)$1	1	134	163	11.4384
..(.(((.(((((....)))))....)))	chr1:22160236-22160479(-)$1	1	15	44	9.9676
((((((((.(((.....)))..))).)))	chr19:4033476-4033760(+)$1	1	150	179	10.0326
((((.(((..((((...))))....))).	chr6:31601552-31601835(+)$1	1	31	60	11.0170
((.((..((((......)))).))....)	chr1:22155427-22155672(-)$1	1	50	79	11.5490
((((((((((((.....))))..))))))	chr17:73892406-73892773(-)$1	1	329	358	11.7316
(.((.....((((......))))...)))	chr16:29817999-29818247(+)$1	1	23	52	9.9838
((((((((((((.....)))).))..)))	chrX:152954103-152954376(+)$1	1	91	120	9.1082
(((((.(((..((......)).))).)))	chr19:803389-803662(+)$1	1	19	48	10.3795
(((((((((((......)))...))))))	chr19:1416432-1416664(+)$1	1	103	132	9.5434
)))((((((((((....))))))))))..	chr21:38119978-38120204(+)$1	1	130	159	9.5222
((((((....(((....)))....)))))	chr22:21983344-21983575(-)$1	1	28	57	11.9076
...((..((((......))))..))...)	chrX:153589595-153589864(-)$1	1	21	50	11.7606
(...((.((((......)))).)).)).)	chr22:50018397-50018654(-)$1	1	103	132	10.3371
)((.(((...(((....)))....)))))	chr19:59060423-59060667(+)$1	1	172	201	11.1430
(((((.(((..(((...)))..)))))))	chr19:4037216-4037476(+)$1	1	193	222	10.3407
(((((..(.((((....)))).)..))))	chr22:50016658-50016910(-)$1	1	151	180	11.2975

#PSSM
e : 0.29	g : 0.12	= : 0.08	i : 0.08	b : 0.08	f : 0.08	c : 0.08	d : 0.04	# : 0.04	h : 0.04	" : 0.04	
e : 0.20	= : 0.08	i : 0.08	[ : 0.08	f : 0.08	g : 0.08	" : 0.08	! : 0.04	d : 0.04	$ : 0.04	# : 0.04	h : 0.04	c : 0.04	b : 0.04	
e : 0.20	= : 0.08	i : 0.08	a : 0.08	b : 0.08	f : 0.08	g : 0.08	" : 0.08	! : 0.04	d : 0.04	$ : 0.04	[ : 0.04	c : 0.04	
b : 0.20	e : 0.16	= : 0.12	i : 0.08	" : 0.08	[ : 0.08	f : 0.08	g : 0.08	# : 0.04	$ : 0.04	
b : 0.20	= : 0.12	e : 0.12	i : 0.08	$ : 0.08	c : 0.08	f : 0.08	g : 0.08	# : 0.04	" : 0.04	[ : 0.04	
[ : 0.16	c : 0.16	= : 0.12	! : 0.12	i : 0.08	$ : 0.08	f : 0.08	# : 0.04	" : 0.04	g : 0.04	b : 0.04	
c : 0.33	= : 0.12	! : 0.12	i : 0.08	# : 0.08	b : 0.08	d : 0.04	$ : 0.04	f : 0.04	[ : 0.04	
c : 0.29	d : 0.16	= : 0.12	[ : 0.08	b : 0.08	i : 0.04	$ : 0.04	f : 0.04	# : 0.04	" : 0.04	a : 0.04	
d : 0.29	c : 0.24	= : 0.08	[ : 0.08	b : 0.04	i : 0.04	e : 0.04	! : 0.04	$ : 0.04	# : 0.04	" : 0.04	
d : 0.41	! : 0.16	c : 0.12	[ : 0.08	b : 0.04	e : 0.04	= : 0.04	# : 0.04	" : 0.04	
d : 0.41	c : 0.29	! : 0.12	[ : 0.08	e : 0.04	= : 0.04	
c : 0.29	d : 0.29	b : 0.16	o : 0.16	e : 0.04	= : 0.04	
c : 0.24	n : 0.16	b : 0.16	d : 0.16	o : 0.16	e : 0.04	= : 0.04	
m : 0.50	o : 0.24	n : 0.16	d : 0.04	c : 0.04	
m : 0.50	o : 0.24	n : 0.16	l : 0.08	
m : 0.50	o : 0.24	n : 0.16	l : 0.08	
m : 0.50	o : 0.24	n : 0.16	l : 0.08	
d : 0.37	c : 0.33	b : 0.12	o : 0.08	e : 0.04	= : 0.04	
d : 0.37	c : 0.33	b : 0.12	o : 0.08	e : 0.04	= : 0.04	
d : 0.41	c : 0.33	b : 0.08	] : 0.04	4 : 0.04	e : 0.04	= : 0.04	
d : 0.45	] : 0.12	4 : 0.12	b : 0.08	2 : 0.08	e : 0.04	3 : 0.04	= : 0.04	
] : 0.29	4 : 0.16	2 : 0.16	= : 0.08	c : 0.08	d : 0.08	i : 0.04	e : 0.04	3 : 0.04	
c : 0.24	4 : 0.20	b : 0.16	= : 0.08	d : 0.08	2 : 0.08	i : 0.04	3 : 0.04	a : 0.04	
c : 0.24	b : 0.20	4 : 0.16	= : 0.12	i : 0.08	d : 0.04	3 : 0.04	f : 0.04	2 : 0.04	
c : 0.20	4 : 0.16	= : 0.12	3 : 0.12	i : 0.08	2 : 0.08	e : 0.04	f : 0.04	g : 0.04	b : 0.04	] : 0.04	
3 : 0.16	= : 0.12	e : 0.12	] : 0.12	4 : 0.12	i : 0.08	c : 0.08	2 : 0.04	f : 0.04	g : 0.04	b : 0.04	
e : 0.16	= : 0.12	3 : 0.12	b : 0.12	c : 0.12	i : 0.08	4 : 0.08	f : 0.08	g : 0.08	
e : 0.16	b : 0.16	= : 0.08	i : 0.08	4 : 0.08	c : 0.08	f : 0.08	g : 0.08	d : 0.04	: : 0.04	3 : 0.04	] : 0.04	
e : 0.29	b : 0.12	= : 0.08	i : 0.08	f : 0.08	g : 0.08	5 : 0.04	d : 0.04	c : 0.04	] : 0.04	h : 0.04	: : 0.04	

#score	256.89503131050424
#seq	24
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_UTR_m3_run1.txt

#BEAR
dddd$$$$$cccpppppppccc333dddd]d	chr22:50013315-50013554(-)$1	239	171	202	16.7639
[a[bb"""ddddpppppppdddd333bb]a]	chr19:1885179-1885452(-)$1	273	99	130	17.6428
ffffff!!ddddpppppppddddffffff33	chr7:100172307-100172573(-)$1	266	127	158	16.6500
bb[eeeee[cccpppppppccc]eeeeebb2	chr12:123463973-123464267(+)$1	294	49	80	16.3097
ggggggg[a[bbpppppppbb]a]ggggggg	chr19:50168043-50168358(-)$1	315	140	171	17.2372
b[hhhhhhhh[apppppppa]hhhhhhhh]b	chr17:7477024-7477337(+)$1	313	230	261	14.2600
[===========ppppppp===========]	chr17:79876115-79876408(-)$1	293	210	241	18.7322
"""ccc!!ddddpppppppdddd22ccc333	chr11:404655-404968(+)$1	313	142	173	18.1708
b!!eeeee[a[apppppppa]a]eeeee333	chr7:77166500-77166752(+)$1	252	89	120	17.3361
ggggg[a!!cccpppppppccc22a22gggg	chr3:195635560-195635882(-)$1	322	247	278	18.4249
ccffffffddddpppppppddddbb[hhhhh	chr22:22899608-22899822(-)$1	214	71	102	15.3281
a!!bb[a[ddddpppppppdddd]a333bb2	chr6:29600378-29600665(-)$1	287	59	90	17.6822
ddd[ccc[ddddpppppppdddd333ccc]d	chr7:2294045-2294323(-)$1	278	174	205	17.7018
%ccc"""bbcccpppppppccc]bb]ccc33	chr17:47126752-47127036(+)$1	284	31	62	17.2778
ggggg[ffffffpppppppffffff]ggggg	chr1:1208163-1208424(-)$1	261	215	246	16.6389
ddd!!ffffffrrrrrrrrrffffff4444d	chr9:139249239-139249543(+)$1	304	15	46	12.2689
d[eeeee[bb[arrrrrrrrra]bb]eeeee	chr7:100174871-100175080(-)$1	209	114	145	12.5200
ccc!!ccc[cccpppppppccc]ccc22ccc	chr5:138629678-138629929(+)$1	251	198	229	17.6439
eeee"""eeeeepppppppeeeee]eeeee:	chr19:2426308-2426559(-)$1	251	61	92	15.7254
gggg[bb[ddddpppppppdddd]bb]gggg	chr15:89441841-89442125(-)$1	284	121	152	17.1778
eeeeffffff[apppppppaffffff22eee	chr20:62329962-62330250(-)$1	288	144	175	15.7494
ddd[eeeee[bbpppppppbb333eeeeedd	chr3:45730918-45731230(+)$1	312	220	251	15.9611
"===========ppppppp===========3	chr17:7477143-7477440(+)$1	297	201	232	18.8297
b[bb"""eeeeepppppppeeeee4444bb]	chr19:18547932-18548201(-)$1	269	174	205	16.2525
b[dddd[a[bbrrrrrrrrrbb]a]dddd]b	chr19:46285662-46285912(-)$1	250	65	96	11.9128
cc!!ffffffrrrrrrrrrffffffccc333	chr17:76122911-76123205(-)$1	294	47	78	12.7121
ggggg[a!!cccpppppppccc22a22gggg	chr3:195635379-195635673(-)$1	294	38	69	18.4249
hhh$$$$$ddddpppppppdddd22hhhhhh	chr20:61437067-61437370(+)$1	303	5	36	15.5306
fff[a[abb[bbpppppppbb]bb]a]a]ff	chr3:45730811-45731099(+)$1	288	200	231	15.6646
eeeeegggggggpppppppggggggg22eee	chr20:62330186-62330445(-)$1	259	15	46	16.4568
=====ccc[cccpppppppccc]ccc]====	chr21:46270353-46270665(-)$1	312	152	183	18.2870
(dddd[bb[cccpppppppccc]bb]dddd0	chr7:100171570-100171837(-)$1	267	130	161	15.5632
eee####eeeeepppppppeeeee22eeeee	chr17:79878104-79878346(-)$1	242	17	48	16.4124
eccca[a[ddddpppppppdddd]a]a]ccc	chr5:179248513-179248779(+)$1	266	141	172	17.9445
$$$a[bb"""bbpppppppbb333bb]a444	chr22:22275553-22275854(-)$1	301	144	175	16.1475
aadddd[eeeeepppppppeeeeedddd]a]	chr9:139904712-139904986(-)$1	274	29	60	15.7692
dd"""gggggggpppppppggggggg333dd	chr12:56632206-56632447(-)$1	241	6	37	17.0670
ggggggggggggpppppppggggggg::ccc	chr17:46656339-46656639(-)$1	300	22	53	15.1527
"dddd[ffffffpppppppffffff]dddde	chr16:4736594-4736839(+)$1	245	128	159	15.6358
!!eeeee[bb[apppppppa]bb]eeeee22	chr19:36245871-36246168(+)$1	297	48	79	16.2524
""eeeee[ddddpppppppddddeeeee]cc	chr19:41771027-41771289(+)$1	262	155	186	17.1440
eeee[eeeeebbpppppppbb]eeeeeeeee	chr2:242707466-242707736(+)$1	270	99	130	15.6608
hhhhhhhhddddpppppppdddd22hhhhhh	chr12:123997831-123998077(-)$1	246	181	212	15.0072
""dddd!!a[bbpppppppbb]a22dddd33	chr10:51748202-51748466(+)$1	264	196	227	16.7180
[bb"""bb[cccpppppppccc]bb4444bb	chr10:74035257-74035534(+)$1	277	48	79	16.6114
===========rrrrrrrrr===========	chr9:139904818-139905104(-)$1	286	184	215	14.7788
"""a####ddddpppppppdddda333dddd	chr3:195635815-195636082(-)$1	267	52	83	18.0928
iiiiiiiii!!apppppppa22iiiiiiiii	chr19:12811283-12811564(-)$1	281	199	230	17.4935
ccffffffddddpppppppddddbb[hhhhh	chr22:22899641-22899871(-)$1	230	120	151	15.3281
fffff####cccpppppppccc4444fffff	chr19:49605885-49606147(+)$1	262	149	180	16.9457

#otherMatches

#Seq PSSM
ugacccuuccacaaagcacguguaugucggc	chr22:50013315-50013554(-)$1	239	171	202	16.7639
guggugagugccgggcaggggcgggggcggg	chr19:1885179-1885452(-)$1	273	99	130	17.6428
CAGGAGCUGGAGUCUCCCCCUUCCUCCUGUG	chr7:100172307-100172573(-)$1	266	127	158	16.6500
CUAUGGGCAAAGAUGCUGCCUUAGUUCAGGU	chr12:123463973-123464267(+)$1	294	49	80	16.3097
UAUGGGUGAAGGACCUGUGCCGUGGCCCGUG	chr19:50168043-50168358(-)$1	315	140	171	17.2372
CGGCUGGGUCGGGCCCACGUGGACCCGGCGG	chr17:7477024-7477337(+)$1	313	230	261	14.2600
GAUAUAUAAGGUUUUCUUUAUUUUGUAUAUG	chr17:79876115-79876408(-)$1	293	210	241	18.7322
CUGGUGUAUGGGGUGGUGACCCAGUCACAUU	chr11:404655-404968(+)$1	313	142	173	18.1708
CAAGCUGGGGGUUGGGGUUGGCGCUAGCGCA	chr7:77166500-77166752(+)$1	252	89	120	17.3361
GCCCCAGGAGGGAGAGGGACCCGGCGAGGGG	chr3:195635560-195635882(-)$1	322	247	278	18.4249
GCGGCGGUGCUCGUGGUUGGAGCUCUCCAGG	chr22:22899608-22899822(-)$1	214	71	102	15.3281
UUAGCAGGGCUCGGAGAGGGGGCGCGCGGCG	chr6:29600378-29600665(-)$1	287	59	90	17.6822
GGAGCCCUGGUCUGGGAGUGGCCUGUGGGGU	chr7:2294045-2294323(-)$1	278	174	205	17.7018
AGGCCCAGGCACGGAGGAAGUGACCAGCCCC	chr17:47126752-47127036(+)$1	284	31	62	17.2778
ACCUGAGCCUAGGGCGUGGUUGGGUCUGGGU	chr1:1208163-1208424(-)$1	261	215	246	16.6389
GAGGGCUGUGUAGGGCAUGGACACAGGGAGC	chr9:139249239-139249543(+)$1	304	15	46	12.2689
CAGCUGUGGCAGGAGCGGGAACGGCGGCAGC	chr7:100174871-100175080(-)$1	209	114	145	12.5200
GCUGAGGGGGAGGGAGGAGCUCGCUCGAGGC	chr5:138629678-138629929(+)$1	251	198	229	17.6439
CCAGCUCGGAGGGUCUCAGCCUCCCCUGGGU	chr19:2426308-2426559(-)$1	251	61	92	15.7254
GGCAGGGUGGGCGUUUGGGGCCCUCUAUGCU	chr15:89441841-89442125(-)$1	284	121	152	17.1778
GGAUCUGGGCACAGCGGGCGGCUCAGGUGUC	chr20:62329962-62330250(-)$1	288	144	175	15.7494
CCUAGGCCUCGCCCGAGUAGCCAUAGGCCGG	chr3:45730918-45731230(+)$1	312	220	251	15.9611
AGGGUCACCCCCUUAUGUCGGGGGUGGCCUG	chr17:7477143-7477440(+)$1	297	201	232	18.8297
UGAAAAAUGCCCGAAAGUGGGGCGGGGCUUG	chr19:18547932-18548201(-)$1	269	174	205	16.2525
UGGCUUGUGAGGGGUUAAGGCUGGGAGGCGG	chr19:46285662-46285912(-)$1	250	65	96	11.9128
GGCAUGAGGCUUAUUCGGUGCCUCACCAUUU	chr17:76122911-76123205(-)$1	294	47	78	12.7121
GCCCCAGGAGGGAGAGGGACCCGGCGAGGGG	chr3:195635379-195635673(-)$1	294	38	69	18.4249
UGCGUUUGCGCCUGGCCAUGGUGGAGCGGGC	chr20:61437067-61437370(+)$1	303	5	36	15.5306
CUGAGGCGCGGCGGGCGGGGCGGCAGGUGCG	chr3:45730811-45731099(+)$1	288	200	231	15.6646
CUUCACUUCCCGGAAAGCAUGGGAGGCCUGG	chr20:62330186-62330445(-)$1	259	15	46	16.4568
UGGGCCACGUGCCCCGGAAGCAGGUGUGUCC	chr21:46270353-46270665(-)$1	312	152	183	18.2870
CGCGGGUGUCGCAGGUGUCGUGUCAGCCGCA	chr7:100171570-100171837(-)$1	267	130	161	15.5632
CCAGACUUCUGUAAAGCACACAGAUGUGGGU	chr17:79878104-79878346(-)$1	242	17	48	16.4124
GCGACAGCGCCUGGGAGAAGGGCACGGAUCG	chr5:179248513-179248779(+)$1	266	141	172	17.9445
AGAGGAGAAAGGGAGGAAGCUGGGCUGUGUG	chr22:22275553-22275854(-)$1	301	144	175	16.1475
GGGCCUGCAUGGGGUGGGGCUGUGGGGCACG	chr9:139904712-139904986(-)$1	274	29	60	15.7692
CCAGCUCCAGGCCACAGAAGCCUGGGAAGGG	chr12:56632206-56632447(-)$1	241	6	37	17.0670
CUAAUCAAUUUUGCUCUCAAAAGUUGCAGGU	chr17:46656339-46656639(-)$1	300	22	53	15.1527
AGGGGAGAGGCCUGGGCCUGGCCUUGUUCCG	chr16:4736594-4736839(+)$1	245	128	159	15.6358
GUCUGGAGUGGGAGGUCUGUGCAGUCCAGGA	chr19:36245871-36246168(+)$1	297	48	79	16.2524
GAGUUCUGAGGAAGGAGGAUCCUGGAAUAUG	chr19:41771027-41771289(+)$1	262	155	186	17.1440
AGAGUGGGGGGCGUGGCAGGCACCCUCCUUU	chr2:242707466-242707736(+)$1	270	99	130	15.6608
GUCCUGGCGCCCCAGGACAGGGCAUGUCGGG	chr12:123997831-123998077(-)$1	246	181	212	15.0072
UCGGCCUAGGACAGCGGGAGUGCGUGGCCAA	chr10:51748202-51748466(+)$1	264	196	227	16.7180
GUGAAGGAAGAGGCACGUGCUCCUCAGAGCA	chr10:74035257-74035534(+)$1	277	48	79	16.6114
CCUGGGCUCUGGAGGUGGGGCAGGGUCUGGG	chr9:139904818-139905104(-)$1	286	184	215	14.7788
CAGGAGAAGGGCGGAGGCAGCCCCGCAGUGC	chr3:195635815-195636082(-)$1	267	52	83	18.0928
CUGCCAGCUUUGUUGCAGCCUCAGCUGGUGG	chr19:12811283-12811564(-)$1	281	199	230	17.4935
GCGGCGGUGCUCGUGGUUGGAGCUCUCCAGG	chr22:22899641-22899871(-)$1	230	120	151	15.3281
AAGGUGUCGUAGGUUUUUACUAAAGAACCUU	chr19:49605885-49606147(+)$1	262	149	180	16.9457

#DB
((((.....(((.......)))...)))).)	chr22:50013315-50013554(-)$1	1	171	202	16.7639
.(.((...((((.......))))...)).).	chr19:1885179-1885452(-)$1	1	99	130	17.6428
((((((..((((.......))))))))))..	chr7:100172307-100172573(-)$1	1	127	158	16.6500
((.(((((.(((.......))).))))))).	chr12:123463973-123464267(+)$1	1	49	80	16.3097
(((((((.(.((.......)).).)))))))	chr19:50168043-50168358(-)$1	1	140	171	17.2372
(.((((((((.(.......).)))))))).)	chr17:7477024-7477337(+)$1	1	230	261	14.2600
.(((((((((((.......))))))))))).	chr17:79876115-79876408(-)$1	1	210	241	18.7322
...(((..((((.......))))..)))...	chr11:404655-404968(+)$1	1	142	173	18.1708
(..(((((.(.(.......).).)))))...	chr7:77166500-77166752(+)$1	1	89	120	17.3361
(((((.(..(((.......)))..)..))))	chr3:195635560-195635882(-)$1	1	247	278	18.4249
))))))))((((.......))))((.(((((	chr22:22899608-22899822(-)$1	1	71	102	15.3281
(..((.(.((((.......)))).)...)).	chr6:29600378-29600665(-)$1	1	59	90	17.6822
(((.(((.((((.......))))...))).)	chr7:2294045-2294323(-)$1	1	174	205	17.7018
.(((...(((((.......))).)).)))..	chr17:47126752-47127036(+)$1	1	31	62	17.2778
(((((.((((((.......)))))).)))))	chr1:1208163-1208424(-)$1	1	215	246	16.6389
(((..((((((.........))))))....)	chr9:139249239-139249543(+)$1	1	15	46	12.2689
(.(((((.((.(.........).)).)))))	chr7:100174871-100175080(-)$1	1	114	145	12.5200
(((..(((.(((.......))).)))..)))	chr5:138629678-138629929(+)$1	1	198	229	17.6439
((((...(((((.......))))).))))).	chr19:2426308-2426559(-)$1	1	61	92	15.7254
((((.((.((((.......)))).)).))))	chr15:89441841-89442125(-)$1	1	121	152	17.1778
((((((((((.(.......)))))))..)))	chr20:62329962-62330250(-)$1	1	144	175	15.7494
(((.(((((.((.......))...)))))))	chr3:45730918-45731230(+)$1	1	220	251	15.9611
.(((((((((((.......))))))))))).	chr17:7477143-7477440(+)$1	1	201	232	18.8297
(.((...(((((.......)))))....)).	chr19:18547932-18548201(-)$1	1	174	205	16.2525
(.((((.(.((.........)).).)))).)	chr19:46285662-46285912(-)$1	1	65	96	11.9128
((..((((((.........)))))))))...	chr17:76122911-76123205(-)$1	1	47	78	12.7121
(((((.(..(((.......)))..)..))))	chr3:195635379-195635673(-)$1	1	38	69	18.4249
(((.....((((.......))))..))))))	chr20:61437067-61437370(+)$1	1	5	36	15.5306
(((.(.(((.((.......)).)).).).))	chr3:45730811-45731099(+)$1	1	200	231	15.6646
((((((((((((.......)))))))..)))	chr20:62330186-62330445(-)$1	1	15	46	16.4568
((((((((.(((.......))).))).))))	chr21:46270353-46270665(-)$1	1	152	183	18.2870
.((((.((.(((.......))).)).)))).	chr7:100171570-100171837(-)$1	1	130	161	15.5632
(((....(((((.......)))))..)))))	chr17:79878104-79878346(-)$1	1	17	48	16.4124
(((((.(.((((.......)))).).).)))	chr5:179248513-179248779(+)$1	1	141	172	17.9445
...(.((...((.......))...)).)...	chr22:22275553-22275854(-)$1	1	144	175	16.1475
((((((.(((((.......))))))))).).	chr9:139904712-139904986(-)$1	1	29	60	15.7692
((...(((((((.......)))))))...))	chr12:56632206-56632447(-)$1	1	6	37	17.0670
)))))(((((((.......)))))))..(((	chr17:46656339-46656639(-)$1	1	22	53	15.1527
.((((.((((((.......)))))).)))))	chr16:4736594-4736839(+)$1	1	128	159	15.6358
..(((((.((.(.......).)).)))))..	chr19:36245871-36246168(+)$1	1	48	79	16.2524
..(((((.((((.......))))))))).))	chr19:41771027-41771289(+)$1	1	155	186	17.1440
((((.(((((((.......)).)))))))))	chr2:242707466-242707736(+)$1	1	99	130	15.6608
((((((((((((.......))))..))))))	chr12:123997831-123998077(-)$1	1	181	212	15.0072
..((((..(.((.......)).)..))))..	chr10:51748202-51748466(+)$1	1	196	227	16.7180
.((...((.(((.......))).))....))	chr10:74035257-74035534(+)$1	1	48	79	16.6114
(((((((((((.........)))))))))))	chr9:139904818-139905104(-)$1	1	184	215	14.7788
...(....((((.......)))))...))))	chr3:195635815-195636082(-)$1	1	52	83	18.0928
(((((((((..(.......)..)))))))))	chr19:12811283-12811564(-)$1	1	199	230	17.4935
))))))))((((.......))))((.(((((	chr22:22899641-22899871(-)$1	1	120	151	15.3281
(((((....(((.......)))....)))))	chr19:49605885-49606147(+)$1	1	149	180	16.9457

#PSSM
d : 0.12	g : 0.12	" : 0.12	e : 0.12	b : 0.10	c : 0.08	[ : 0.06	f : 0.06	a : 0.04	h : 0.04	= : 0.04	% : 0.02	( : 0.02	$ : 0.02	! : 0.02	i : 0.02	
d : 0.14	g : 0.12	c : 0.12	e : 0.10	[ : 0.08	= : 0.08	" : 0.08	f : 0.06	! : 0.06	a : 0.04	b : 0.04	h : 0.04	$ : 0.02	i : 0.02	
d : 0.18	e : 0.16	g : 0.12	f : 0.10	= : 0.08	h : 0.06	" : 0.06	! : 0.06	c : 0.06	[ : 0.04	b : 0.04	$ : 0.02	i : 0.02	
e : 0.18	d : 0.12	g : 0.12	f : 0.08	= : 0.08	b : 0.06	c : 0.06	[ : 0.06	! : 0.06	h : 0.04	a : 0.04	" : 0.04	$ : 0.02	# : 0.02	i : 0.02	
e : 0.14	f : 0.12	g : 0.10	" : 0.10	d : 0.10	= : 0.08	[ : 0.06	$ : 0.04	b : 0.04	h : 0.04	c : 0.04	! : 0.04	a : 0.04	# : 0.04	i : 0.02	
[ : 0.16	e : 0.14	f : 0.12	" : 0.10	g : 0.08	c : 0.08	= : 0.06	d : 0.06	# : 0.06	$ : 0.04	h : 0.04	b : 0.04	i : 0.02	
e : 0.14	f : 0.14	a : 0.10	" : 0.08	g : 0.08	b : 0.08	! : 0.06	= : 0.06	c : 0.06	# : 0.06	$ : 0.04	h : 0.04	[ : 0.04	i : 0.02	
e : 0.16	[ : 0.16	f : 0.14	! : 0.10	b : 0.08	= : 0.06	g : 0.06	$ : 0.04	" : 0.04	h : 0.04	c : 0.04	# : 0.04	a : 0.02	i : 0.02	
d : 0.25	[ : 0.14	e : 0.12	f : 0.10	b : 0.08	= : 0.06	g : 0.06	a : 0.04	! : 0.04	$ : 0.02	h : 0.02	" : 0.02	i : 0.02	# : 0.02	
d : 0.25	c : 0.19	f : 0.10	e : 0.10	[ : 0.08	= : 0.06	b : 0.06	g : 0.06	h : 0.02	a : 0.02	" : 0.02	! : 0.02	
d : 0.25	c : 0.19	b : 0.14	[ : 0.10	e : 0.08	= : 0.06	f : 0.06	g : 0.06	r : 0.02	! : 0.02	
d : 0.25	c : 0.19	b : 0.12	a : 0.12	r : 0.08	e : 0.08	g : 0.06	= : 0.04	f : 0.04	
p : 0.90	r : 0.10	
p : 0.90	r : 0.10	
p : 0.90	r : 0.10	
p : 0.90	r : 0.10	
p : 0.90	r : 0.10	
p : 0.90	r : 0.10	
p : 0.90	r : 0.10	
d : 0.25	c : 0.19	b : 0.12	a : 0.10	r : 0.08	e : 0.08	f : 0.06	g : 0.06	= : 0.04	
d : 0.25	c : 0.19	b : 0.14	f : 0.10	e : 0.08	] : 0.06	= : 0.06	g : 0.06	r : 0.02	2 : 0.02	
d : 0.25	c : 0.19	f : 0.10	] : 0.08	e : 0.08	= : 0.06	g : 0.06	a : 0.04	3 : 0.04	b : 0.04	h : 0.02	2 : 0.02	
d : 0.25	] : 0.18	f : 0.10	e : 0.10	3 : 0.06	= : 0.06	g : 0.06	a : 0.04	2 : 0.04	b : 0.04	h : 0.02	i : 0.02	4 : 0.02	
e : 0.16	b : 0.14	f : 0.12	2 : 0.12	3 : 0.10	] : 0.10	= : 0.06	g : 0.06	c : 0.04	a : 0.04	h : 0.02	i : 0.02	4 : 0.02	
b : 0.16	f : 0.12	e : 0.12	2 : 0.10	3 : 0.08	g : 0.08	a : 0.08	= : 0.06	] : 0.06	c : 0.04	4 : 0.04	h : 0.02	d : 0.02	i : 0.02	
e : 0.14	] : 0.12	d : 0.08	3 : 0.08	g : 0.08	c : 0.08	f : 0.06	h : 0.06	= : 0.06	2 : 0.06	4 : 0.06	[ : 0.04	b : 0.04	a : 0.02	i : 0.02	
e : 0.18	d : 0.12	h : 0.10	2 : 0.10	c : 0.08	] : 0.08	= : 0.06	3 : 0.06	4 : 0.06	f : 0.04	g : 0.04	b : 0.02	a : 0.02	: : 0.02	i : 0.02	
e : 0.18	d : 0.14	g : 0.10	h : 0.10	= : 0.08	c : 0.08	4 : 0.06	2 : 0.06	f : 0.04	3 : 0.04	a : 0.04	b : 0.02	] : 0.02	: : 0.02	i : 0.02	
e : 0.16	d : 0.12	g : 0.10	h : 0.10	c : 0.10	] : 0.08	= : 0.08	3 : 0.08	b : 0.06	4 : 0.06	f : 0.04	i : 0.02	
3 : 0.12	e : 0.12	g : 0.10	d : 0.10	] : 0.08	b : 0.08	= : 0.08	h : 0.08	c : 0.08	a : 0.04	4 : 0.04	f : 0.04	2 : 0.02	i : 0.02	
3 : 0.14	d : 0.12	e : 0.12	g : 0.10	] : 0.08	h : 0.08	c : 0.08	2 : 0.06	b : 0.06	f : 0.04	= : 0.04	: : 0.02	0 : 0.02	4 : 0.02	i : 0.02	

#score	817.001406546938
#seq	50
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_UTR_m1_run2.txt

#BEAR
cc!!ddddxxxxxxxxxxxxxxxdddd22	chr19:10506519-10506790(-)$1	271	117	146	20.5610
dddd[dddda^^^^^^^^^^^^^^^^^^^	chr16:29709258-29709513(+)$1	255	37	66	19.9354
$eeeeecccxxxxxxxxxxxxxxxccc]e	chrX:41205443-41205740(+)$1	297	228	257	20.8406
dd####bbxxxxxxxxxxxxxxxbb4444	chr3:195800780-195801094(-)$1	314	36	65	20.8038
^^^^^^^^^^^^^^^^^^^^^^^^ccc]b	chr12:56506601-56506926(+)$1	325	112	141	19.3167
cc"""dddd^^^^^^^^^^^^^^^^^^^d	chr3:58154085-58154296(+)$1	211	84	113	20.8947
$$$ffffffwwwwwwwwwwwwwwffffff	chr17:43174438-43174708(+)$1	270	124	153	22.2080
hhhhhhh[cccuuuuuuuuuuuuccc]hh	chr3:184049705-184049973(+)$1	268	114	143	19.4569
a[ccc[eeeeeuuuuuuuuuuuueeeeec	chr3:149089493-149089754(-)$1	261	152	181	20.9835
ccc!!dddduuuuuuuuuuuuddddccc]	chr4:99997494-99997786(-)$1	292	245	274	21.1625
===========uuuuuuuuuuuu======	chr14:35779881-35780139(+)$1	258	205	234	21.5721
gg:dddd[bbvvvvvvvvvvvvvbbdddd	chr3:47918809-47919085(-)$1	276	203	232	19.3261
iiiiiiiiixxxxxxxxxxxxxxxiiiii	chr3:49399828-49400090(-)$1	262	17	46	20.9642
oocccdddd^^^^^^^^^^^^^^^^^^^^	chrX:108902492-108902736(-)$1	244	108	137	20.0530
ccc^^^^^^^^^^^^^^^^^^^^^ccc]d	chr9:136528741-136529013(-)$1	272	197	226	19.7523
ff"""dddd^^^^^^^^^^^^^^^^^^^^	chr11:111909879-111910146(+)$1	267	89	118	20.8726
c[bb[ddddwwwwwwwwwwwwwwdddd]b	chr14:24612505-24612799(-)$1	294	48	77	23.2296
iiiiiiiiiwwwwwwwwwwwwwwiiiiii	chr2:62112072-62112281(-)$1	209	27	56	22.9312
fffff[ddddvvvvvvvvvvvvvdddd]f	chr4:2886140-2886494(+)$1	354	75	104	21.3157
:gggggggxxxxxxxxxxxxxxxgggggg	chr17:49371265-49371503(+)$1	238	163	192	19.9611
c[ffffffyyyyyyyyyyyyyyyyfffff	chr11:68564229-68564490(-)$1	261	137	166	22.2855
dddd[dddduuuuuuuuuuuudddddddd	chr6:43517180-43517416(-)$1	236	136	165	19.9133
=======[ddddtttttttttttdddd]=	chr7:54819928-54820202(-)$1	274	79	108	18.0365
dddd[eeeeevvvvvvvvvvvvveeeeed	chr2:235962775-235963013(+)$1	238	189	218	20.9013
=========wwwwwwwwwwwwww======	chr17:7481047-7481275(+)$1	228	118	147	23.7236
c[ffffffxxxxxxxxxxxxxxxffffff	chr8:48887331-48887597(+)$1	266	162	191	20.5268
gggggg[bbwwwwwwwwwwwwwwbb]ggg	chr5:130495124-130495403(-)$1	279	74	103	22.3536
b[gggggggvvvvvvvvvvvvvggggggg	chr17:47004250-47004539(+)$1	289	109	138	21.3146
b[bb[bbyyyyyyyyyyyyyyyybb]bb]	chr7:94294876-94295130(+)$1	254	64	93	20.4978
ggggg[cccwwwwwwwwwwwwwwccc]gg	chr13:98641215-98641513(+)$1	298	55	84	23.5699
fff"""cccvvvvvvvvvvvvvcccffff	chr17:38187310-38187572(-)$1	262	195	224	21.8350
ffff!!ddddvvvvvvvvvvvvvdddd]f	chr19:49507433-49507773(+)$1	340	13	42	21.6018
g####cccbbtttttttttttbb22ccc4	chr5:134678888-134679146(-)$1	258	150	179	18.1257
ffff[dddd^^^^^^^^^^^^^^^^^^^^	chr4:122591008-122591224(-)$1	216	142	171	20.5595
bbb!!cccbbxxxxxxxxxxxxxxxbb]c	chrX:114868220-114868467(+)$1	247	140	169	19.6341
dddbb"""ccctttttttttttccc333b	chr11:18428855-18429103(+)$1	248	198	227	18.1511
c[ggggggg^^^^^^^^^^^^^^^^^^^^	chr1:24022734-24022969(+)$1	235	100	129	21.0427
ddd!!addddvvvvvvvvvvvvvdddd44	chr11:57077663-57077926(-)$1	263	124	153	21.8747
!!bb^^^^^^^^^^^^^^^^^^^^^bb]b	chr16:84792868-84793150(+)$1	282	60	89	19.3509
ccc!!eeeeeuuuuuuuuuuuueeeee22	chr1:156304407-156304630(-)$1	223	141	170	21.5361
dddd[ccc^^^^^^^^^^^^^^^^^^^^^	chr11:18429194-18429433(+)$1	239	155	184	20.6485
E::eeeeeyyyyyyyyyyyyyyyyeeeee	chr14:24775476-24775758(-)$1	282	207	236	19.1327
a[ffffff^^^^^^^^^^^^^^^^^^^^^	chr6:11191170-11191417(-)$1	247	202	231	20.8128
:eeeeecccwwwwwwwwwwwwwwccc]ee	chr16:21973983-21974277(+)$1	294	233	262	21.9019
:gggggggxxxxxxxxxxxxxxxgggggg	chr14:64926431-64926689(+)$1	258	212	241	19.9611
!!bb[eeeeeuuuuuuuuuuuueeeeebb	chr1:156104554-156104845(+)$1	291	42	71	20.9748
!!ffffff^^^^^^^^^^^^^^^^^^^^^	chr10:5807739-5808025(-)$1	286	185	214	20.8334
cc[ffffffuuuuuuuuuuuuffffff]c	chr17:7127565-7127811(+)$1	246	211	240	20.6560
%%%%%%cccwwwwwwwwwwwwwwccc777	chr3:32938481-32938735(+)$1	254	149	178	19.4908
g[a[eeeeevvvvvvvvvvvvveeeee]a	chr12:111180356-111180627(-)$1	271	37	66	21.9088
iiiiiiiiiyyyyyyyyyyyyyyyyiiii	chr2:74588532-74588825(-)$1	293	144	173	22.3962
c"""fffffftttttttttttffffff33	chr2:38536438-38536738(-)$1	300	77	106	18.3518
a!!ffffffxxxxxxxxxxxxxxxfffff	chr17:7480920-7481124(+)$1	204	67	96	20.9025
c[bb[ffffffvvvvvvvvvvvvvfffff	chr19:36640948-36641238(+)$1	290	14	43	20.1240
ccc!!ddddvvvvvvvvvvvvvdddd22c	chr17:38185912-38186170(-)$1	258	148	177	21.6902
"""bb!!ddddtttttttttttdddd22b	chr6:3129178-3129526(+)$1	348	16	45	17.6223
[a[ffffffuuuuuuuuuuuuffffff]a	chr17:7127700-7127945(+)$1	245	76	105	20.7025
ddddeeeee^^^^^^^^^^^^^^^^^^^^	chr12:118582815-118583034(+)$1	219	147	176	19.9766
ffffff[cccuuuuuuuuuuuucccffff	chr14:24774651-24774926(-)$1	275	65	94	21.2933
iiiiiiiii^^^^^^^^^^^^^^^^^^^^	chr16:84778455-84778738(+)$1	283	53	82	20.7962
gggg[ccc^^^^^^^^^^^^^^^^^^^^^	chr17:49238989-49239283(+)$1	294	221	250	21.2113
&&&&&&cccwwwwwwwwwwwwwwccc777	chr3:127323762-127324062(+)$1	300	149	178	19.5347
cc"""ddddwwwwwwwwwwwwwwdddd44	chr1:10464119-10464425(+)$1	306	38	67	23.8072
DDDffffffwwwwwwwwwwwwwwffffff	chr14:24607304-24607509(+)$1	205	22	51	19.7063
$eeeeecccxxxxxxxxxxxxxxxccc]e	chrX:41205540-41205763(+)$1	223	131	160	20.8406

#otherMatches

#Seq PSSM
GGAGAUGCGCAAGAAGGAGAAGAGCAUGC	chr19:10506519-10506790(-)$1	271	117	146	20.5610
cucugucuccaaagaagaaacaaaggaaa	chr16:29709258-29709513(+)$1	255	37	66	19.9354
AAACAUCUUUCUUUUAUUCAAAUUGAGCA	chrX:41205443-41205740(+)$1	297	228	257	20.8406
GAUUAACAGGGAUAGAUUACAAAUGAAAU	chr3:195800780-195801094(-)$1	314	36	65	20.8038
CCUUCCCACCAAACCCCAGACUCUGUGAA	chr12:56506601-56506926(+)$1	325	112	141	19.3167
UCCAGUCGGAAUUCUUUAUUAACACCACC	chr3:58154085-58154296(+)$1	211	84	113	20.8947
UUGGUUGGGUUCAUUAGCGCCAUCCCAGC	chr17:43174438-43174708(+)$1	270	124	153	22.2080
CUACAGGCGCUCUACGCCCUCCAGGCCCU	chr3:184049705-184049973(+)$1	268	114	143	19.4569
GUGGAAUGGAAUGUAUCUCUGUUUUCUAU	chr3:149089493-149089754(-)$1	261	152	181	20.9835
CCUCAGGAUUUUAGUAAACCCAUCCAGGA	chr4:99997494-99997786(-)$1	292	245	274	21.1625
GGCCUCUUGGUUGUUGUAAGUAUGCUAAG	chr14:35779881-35780139(+)$1	258	205	234	21.5721
UUCUACUGCCAUAAUUUUUAAACGGAGUA	chr3:47918809-47919085(-)$1	276	203	232	19.3261
CAUUUUUCUUUCAGAAAACAUCCCAGAAA	chr3:49399828-49400090(-)$1	262	17	46	20.9642
AUGGAAGCUGAAAUACUGAAAGAAAUUCG	chrX:108902492-108902736(-)$1	244	108	137	20.0530
AGGCAGUCUCUAAUCCACCCCAAUCCUCC	chr9:136528741-136529013(-)$1	272	197	226	19.7523
UGGCCGCUGUUCCUCCAACUCCCCAGCCU	chr11:111909879-111910146(+)$1	267	89	118	20.8726
GCAGGCAGGGGAUUGGCUAAGAACCUGAC	chr14:24612505-24612799(-)$1	294	48	77	23.2296
aaaaaaaaGUUCUAAUUUGUUUUCUUUUU	chr2:62112072-62112281(-)$1	209	27	56	22.9312
cUGAGUUUUGUUUUUCUUUAUUUCAGGUC	chr4:2886140-2886494(+)$1	354	75	104	21.3157
AGUCAGAGAUACCUAUAAACUACUUCUGA	chr17:49371265-49371503(+)$1	238	163	192	19.9611
CUCAUGGUGAACAGCAACUAUUAUGCCAU	chr11:68564229-68564490(-)$1	261	137	166	22.2855
GCAUGCUUGUUCCUCCAUCAUCAAGAUGU	chr6:43517180-43517416(-)$1	236	136	165	19.9133
UCUUUUACAGUGGUGGCUGAAUACAUUUU	chr7:54819928-54820202(-)$1	274	79	108	18.0365
UCCCUGCGUGUAAGAAGGUGAAUCACGUG	chr2:235962775-235963013(+)$1	238	189	218	20.9013
GAACGAGACGUGAUUAUGAGGGAGUUUCG	chr17:7481047-7481275(+)$1	228	118	147	23.7236
CAUCGUGGACAUAUCUAUUCUUACUACGG	chr8:48887331-48887597(+)$1	266	162	191	20.5268
UAAGAAACUUUUUUUCCUUUUCCAGCUUC	chr5:130495124-130495403(-)$1	279	74	103	22.3536
ACCAGUCCCUCUUGAUGCGCCUGGGACUG	chr17:47004250-47004539(+)$1	289	109	138	21.3146
ccgccgccuccaccaccaccaccgccgcc	chr7:94294876-94295130(+)$1	254	64	93	20.4978
AGUUCUGACUUACACAACUUUAUGUCUGG	chr13:98641215-98641513(+)$1	298	55	84	23.5699
CCCUUGACCUCUCUCUUGUUACGGUGGGG	chr17:38187310-38187572(-)$1	262	195	224	21.8350
UGCUUCCAUCUCACUAGCUUCCUGAUGUG	chr19:49507433-49507773(+)$1	340	13	42	21.6018
GAUAAGAAGCUGAAAUCCAUUGCAUUUCC	chr5:134678888-134679146(-)$1	258	150	179	18.1257
CUAAUACAUUUCUCUUUCUAAUUAUUAUU	chr4:122591008-122591224(-)$1	216	142	171	20.5595
AACAAGAAGAAACUUACACCCUUCAUCAU	chrX:114868220-114868467(+)$1	247	140	169	19.6341
GUGUGAAAUAGUUCUGCCACCUCUGACGC	chr11:18428855-18429103(+)$1	248	198	227	18.1511
AUGAUGGGAUCAUCCUUCCUGGCAAAUAA	chr1:24022734-24022969(+)$1	235	100	129	21.0427
GGCAUCGGCCAGGAGGAGAUGGAGGCCAG	chr11:57077663-57077926(-)$1	263	124	153	21.8747
CUGUUCAUUUCCUUUACGCUUCCUUACUG	chr16:84792868-84793150(+)$1	282	60	89	19.3509
UGGUUUUGUUUUUUUGCUUUCUGACAGUU	chr1:156304407-156304630(-)$1	223	141	170	21.5361
CAAGUGUUAUACCAACUAAAACCCCCAAU	chr11:18429194-18429433(+)$1	239	155	184	20.6485
AAUGCCUGUCCUUUAGAGCUUUCCCGGGC	chr14:24775476-24775758(-)$1	282	207	236	19.1327
GCCUGUCCCCGAAUCACCCACCCCCGCAA	chr6:11191170-11191417(-)$1	247	202	231	20.8128
UUCCAGAUCACAUUUGAUUCUAAGAUACU	chr16:21973983-21974277(+)$1	294	233	262	21.9019
UCAUGUAUAAAUUAACAUAAAUCAUGCAU	chr14:64926431-64926689(+)$1	258	212	241	19.9611
AGCUGCGUGAGACCAAGCGCCGUCAUGAG	chr1:156104554-156104845(+)$1	291	42	71	20.9748
AAUACUCCCCUUCACCUUUCUAAUUAUUA	chr10:5807739-5808025(-)$1	286	185	214	20.8334
CGCACUGUCCCCAUCUCUUAAGGCAGUAC	chr17:7127565-7127811(+)$1	246	211	240	20.6560
GCAAAAUGCUUUAAUUUUUAACUGCAGAA	chr3:32938481-32938735(+)$1	254	149	178	19.4908
GGCGUGGGAAAGGAGGUGUGAGUcccggg	chr12:111180356-111180627(-)$1	271	37	66	21.9088
GGCUGGUGCUGACCCAGGAGCAGCUGCAC	chr2:74588532-74588825(-)$1	293	144	173	22.3962
UUUUGUUUUCUAGAUAUUGAUGAAGACUU	chr2:38536438-38536738(-)$1	300	77	106	18.3518
GAAGAUGCAUGCUCGAGAUUUCACUGUAU	chr17:7480920-7481124(+)$1	204	67	96	20.9025
UCCACGGGUCUCCCCAUUCCCACCAGGCC	chr19:36640948-36641238(+)$1	290	14	43	20.1240
CACUGUCACAAACAUCCUCAAGGUGAGUG	chr17:38185912-38186170(-)$1	258	148	177	21.6902
AUUGAUUCUGAUAAUUAGUGAUUCAGUUU	chr6:3129178-3129526(+)$1	348	16	45	17.6223
CGCACUGUCCCCAUCUCUUAAGGCAGUAC	chr17:7127700-7127945(+)$1	245	76	105	20.7025
AAGGGAGGUUUaaaaaaaaaaaaaaaaaa	chr12:118582815-118583034(+)$1	219	147	176	19.9766
AGGGCCGCCUCCAUUCCUACUAAGGGGCU	chr14:24774651-24774926(-)$1	275	65	94	21.2933
CAGGUGGUCUUGGACAAAGGGAGCGUAAA	chr16:84778455-84778738(+)$1	283	53	82	20.7962
AGGGCAGACCACAUUGCUUUUCACAUCCA	chr17:49238989-49239283(+)$1	294	221	250	21.2113
CACCACCGCUUCAAGAACUUCCUGCGCAC	chr3:127323762-127324062(+)$1	300	149	178	19.5347
UGAAACAUGGAAGCAUAAUGAAACAUGGA	chr1:10464119-10464425(+)$1	306	38	67	23.8072
GUGAGAGCGCUGCCCCACUUCCCUGCUCU	chr14:24607304-24607509(+)$1	205	22	51	19.7063
AAACAUCUUUCUUUUAUUCAAAUUGAGCA	chrX:41205540-41205763(+)$1	223	131	160	20.8406

#DB
((..((((...............))))..	chr19:10506519-10506790(-)$1	1	117	146	20.5610
((((.(((((...................	chr16:29709258-29709513(+)$1	1	37	66	19.9354
.((((((((...............))).)	chrX:41205443-41205740(+)$1	1	228	257	20.8406
((....((...............))....	chr3:195800780-195801094(-)$1	1	36	65	20.8038
........................))).)	chr12:56506601-56506926(+)$1	1	112	141	19.3167
((...((((...................)	chr3:58154085-58154296(+)$1	1	84	113	20.8947
...((((((..............))))))	chr17:43174438-43174708(+)$1	1	124	153	22.2080
(((((((.(((............))).))	chr3:184049705-184049973(+)$1	1	114	143	19.4569
(.(((.(((((............))))))	chr3:149089493-149089754(-)$1	1	152	181	20.9835
(((..((((............))))))).	chr4:99997494-99997786(-)$1	1	245	274	21.1625
(((((((((((............))))))	chr14:35779881-35780139(+)$1	1	205	234	21.5721
)).((((.((.............))))))	chr3:47918809-47919085(-)$1	1	203	232	19.3261
(((((((((...............)))))	chr3:49399828-49400090(-)$1	1	17	46	20.9642
..)))((((....................	chrX:108902492-108902736(-)$1	1	108	137	20.0530
(((.....................))).)	chr9:136528741-136529013(-)$1	1	197	226	19.7523
((...((((....................	chr11:111909879-111910146(+)$1	1	89	118	20.8726
(.((.((((..............)))).)	chr14:24612505-24612799(-)$1	1	48	77	23.2296
(((((((((..............))))))	chr2:62112072-62112281(-)$1	1	27	56	22.9312
(((((.((((.............)))).)	chr4:2886140-2886494(+)$1	1	75	104	21.3157
.(((((((...............))))))	chr17:49371265-49371503(+)$1	1	163	192	19.9611
(.((((((................)))))	chr11:68564229-68564490(-)$1	1	137	166	22.2855
((((.((((............))))))))	chr6:43517180-43517416(-)$1	1	136	165	19.9133
(((((((.((((...........)))).)	chr7:54819928-54820202(-)$1	1	79	108	18.0365
((((.(((((.............))))))	chr2:235962775-235963013(+)$1	1	189	218	20.9013
(((((((((..............))))))	chr17:7481047-7481275(+)$1	1	118	147	23.7236
(.((((((...............))))))	chr8:48887331-48887597(+)$1	1	162	191	20.5268
((((((.((..............)).)))	chr5:130495124-130495403(-)$1	1	74	103	22.3536
(.(((((((.............)))))))	chr17:47004250-47004539(+)$1	1	109	138	21.3146
(.((.((................)).)).	chr7:94294876-94295130(+)$1	1	64	93	20.4978
(((((.(((..............))).))	chr13:98641215-98641513(+)$1	1	55	84	23.5699
(((...(((.............)))))))	chr17:38187310-38187572(-)$1	1	195	224	21.8350
((((..((((.............)))).)	chr19:49507433-49507773(+)$1	1	13	42	21.6018
(....(((((...........))..))).	chr5:134678888-134679146(-)$1	1	150	179	18.1257
((((.((((....................	chr4:122591008-122591224(-)$1	1	142	171	20.5595
(((..(((((...............)).)	chrX:114868220-114868467(+)$1	1	140	169	19.6341
(((((...(((...........)))...)	chr11:18428855-18429103(+)$1	1	198	227	18.1511
(.(((((((....................	chr1:24022734-24022969(+)$1	1	100	129	21.0427
(((..(((((.............))))..	chr11:57077663-57077926(-)$1	1	124	153	21.8747
..((.....................)).)	chr16:84792868-84793150(+)$1	1	60	89	19.3509
(((..(((((............)))))..	chr1:156304407-156304630(-)$1	1	141	170	21.5361
((((.(((.....................	chr11:18429194-18429433(+)$1	1	155	184	20.6485
)..(((((................)))))	chr14:24775476-24775758(-)$1	1	207	236	19.1327
(.((((((.....................	chr6:11191170-11191417(-)$1	1	202	231	20.8128
.((((((((..............))).))	chr16:21973983-21974277(+)$1	1	233	262	21.9019
.(((((((...............))))))	chr14:64926431-64926689(+)$1	1	212	241	19.9611
..((.(((((............)))))))	chr1:156104554-156104845(+)$1	1	42	71	20.9748
..((((((.....................	chr10:5807739-5808025(-)$1	1	185	214	20.8334
((.((((((............)))))).)	chr17:7127565-7127811(+)$1	1	211	240	20.6560
......(((..............)))...	chr3:32938481-32938735(+)$1	1	149	178	19.4908
(.(.(((((.............))))).)	chr12:111180356-111180627(-)$1	1	37	66	21.9088
(((((((((................))))	chr2:74588532-74588825(-)$1	1	144	173	22.3962
(...((((((...........))))))..	chr2:38536438-38536738(-)$1	1	77	106	18.3518
(..((((((...............)))))	chr17:7480920-7481124(+)$1	1	67	96	20.9025
(.((.((((((.............)))))	chr19:36640948-36641238(+)$1	1	14	43	20.1240
(((..((((.............))))..)	chr17:38185912-38186170(-)$1	1	148	177	21.6902
...((..((((...........))))..)	chr6:3129178-3129526(+)$1	1	16	45	17.6223
.(.((((((............)))))).)	chr17:7127700-7127945(+)$1	1	76	105	20.7025
(((((((((....................	chr12:118582815-118583034(+)$1	1	147	176	19.9766
((((((.(((............)))))))	chr14:24774651-24774926(-)$1	1	65	94	21.2933
(((((((((....................	chr16:84778455-84778738(+)$1	1	53	82	20.7962
((((.(((.....................	chr17:49238989-49239283(+)$1	1	221	250	21.2113
......(((..............)))...	chr3:127323762-127324062(+)$1	1	149	178	19.5347
((...((((..............))))..	chr1:10464119-10464425(+)$1	1	38	67	23.8072
(((((((((..............))))))	chr14:24607304-24607509(+)$1	1	22	51	19.7063
.((((((((...............))).)	chrX:41205540-41205763(+)$1	1	131	160	20.8406

#PSSM
c : 0.21	d : 0.12	g : 0.09	f : 0.09	i : 0.06	$ : 0.04	a : 0.04	= : 0.04	: : 0.04	b : 0.04	! : 0.04	^ : 0.01	h : 0.01	o : 0.01	E : 0.01	% : 0.01	" : 0.01	[ : 0.01	& : 0.01	D : 0.01	
[ : 0.15	c : 0.12	d : 0.12	g : 0.09	f : 0.09	i : 0.06	! : 0.06	e : 0.04	= : 0.04	" : 0.03	^ : 0.01	$ : 0.01	h : 0.01	o : 0.01	# : 0.01	b : 0.01	: : 0.01	% : 0.01	a : 0.01	& : 0.01	D : 0.01	
f : 0.13	d : 0.10	g : 0.10	c : 0.09	b : 0.09	" : 0.07	i : 0.06	e : 0.04	= : 0.04	! : 0.03	# : 0.03	: : 0.03	[ : 0.03	^ : 0.01	$ : 0.01	h : 0.01	% : 0.01	a : 0.01	& : 0.01	D : 0.01	
f : 0.20	b : 0.10	g : 0.10	! : 0.09	d : 0.09	" : 0.07	e : 0.06	i : 0.06	= : 0.04	# : 0.03	^ : 0.03	c : 0.03	h : 0.01	% : 0.01	[ : 0.01	& : 0.01	
f : 0.18	[ : 0.15	e : 0.09	! : 0.09	g : 0.09	" : 0.06	i : 0.06	^ : 0.04	= : 0.04	d : 0.03	# : 0.03	c : 0.03	b : 0.03	h : 0.01	% : 0.01	& : 0.01	
d : 0.18	f : 0.18	e : 0.13	g : 0.07	i : 0.06	c : 0.06	^ : 0.04	[ : 0.04	= : 0.04	" : 0.03	! : 0.03	# : 0.01	h : 0.01	b : 0.01	a : 0.01	% : 0.01	& : 0.01	
d : 0.23	c : 0.16	f : 0.16	e : 0.10	i : 0.06	g : 0.06	^ : 0.04	= : 0.04	b : 0.03	[ : 0.03	h : 0.01	" : 0.01	! : 0.01	
d : 0.23	c : 0.18	f : 0.16	e : 0.10	i : 0.06	g : 0.06	^ : 0.04	[ : 0.04	b : 0.03	= : 0.03	y : 0.01	" : 0.01	
d : 0.23	c : 0.15	^ : 0.10	f : 0.10	e : 0.09	x : 0.07	b : 0.06	i : 0.06	y : 0.04	= : 0.03	g : 0.03	
^ : 0.21	w : 0.16	x : 0.13	d : 0.07	e : 0.06	u : 0.06	y : 0.06	v : 0.06	c : 0.04	b : 0.04	f : 0.03	a : 0.01	= : 0.01	
^ : 0.23	w : 0.16	x : 0.15	v : 0.13	u : 0.10	y : 0.06	c : 0.03	d : 0.03	t : 0.03	e : 0.01	= : 0.01	f : 0.01	
^ : 0.23	w : 0.16	x : 0.15	u : 0.15	v : 0.15	y : 0.06	t : 0.06	d : 0.01	
^ : 0.23	w : 0.16	x : 0.15	u : 0.15	v : 0.15	t : 0.07	y : 0.06	
^ : 0.23	w : 0.16	x : 0.15	u : 0.15	v : 0.15	t : 0.07	y : 0.06	
^ : 0.23	w : 0.16	x : 0.15	u : 0.15	v : 0.15	t : 0.07	y : 0.06	
^ : 0.23	w : 0.16	x : 0.15	u : 0.15	v : 0.15	t : 0.07	y : 0.06	
^ : 0.23	w : 0.16	x : 0.15	u : 0.15	v : 0.15	t : 0.07	y : 0.06	
^ : 0.23	w : 0.16	x : 0.15	u : 0.15	v : 0.15	t : 0.07	y : 0.06	
^ : 0.23	w : 0.16	x : 0.15	u : 0.15	v : 0.15	t : 0.07	y : 0.06	
^ : 0.23	w : 0.16	x : 0.15	u : 0.15	v : 0.15	t : 0.07	y : 0.06	
^ : 0.23	w : 0.16	x : 0.15	u : 0.15	v : 0.15	t : 0.07	y : 0.06	
^ : 0.23	w : 0.16	x : 0.15	v : 0.15	u : 0.09	y : 0.06	t : 0.04	f : 0.04	d : 0.03	b : 0.01	
^ : 0.23	w : 0.16	x : 0.15	v : 0.09	d : 0.06	y : 0.06	u : 0.04	c : 0.04	e : 0.04	f : 0.04	t : 0.01	g : 0.01	b : 0.01	
^ : 0.23	d : 0.16	c : 0.12	f : 0.09	x : 0.07	e : 0.07	b : 0.06	g : 0.04	y : 0.04	= : 0.03	i : 0.01	2 : 0.01	v : 0.01	
^ : 0.20	c : 0.18	d : 0.16	f : 0.13	e : 0.09	b : 0.06	g : 0.04	= : 0.03	i : 0.03	2 : 0.01	x : 0.01	y : 0.01	
^ : 0.18	d : 0.16	c : 0.16	f : 0.16	e : 0.09	i : 0.04	g : 0.04	= : 0.03	] : 0.03	b : 0.03	4 : 0.01	3 : 0.01	
^ : 0.18	f : 0.16	d : 0.13	c : 0.09	e : 0.09	g : 0.06	] : 0.04	i : 0.04	b : 0.04	= : 0.03	7 : 0.03	2 : 0.03	4 : 0.01	3 : 0.01	
] : 0.20	^ : 0.18	f : 0.12	g : 0.07	2 : 0.06	e : 0.06	4 : 0.04	i : 0.04	c : 0.03	= : 0.03	d : 0.03	b : 0.03	3 : 0.03	7 : 0.03	h : 0.01	
^ : 0.16	f : 0.15	b : 0.09	d : 0.07	g : 0.07	e : 0.06	4 : 0.06	c : 0.06	= : 0.04	i : 0.04	2 : 0.03	] : 0.03	7 : 0.03	a : 0.03	h : 0.01	3 : 0.01	

#score	1348.255140083853
#seq	65
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_transcript_m2_run2.txt

#BEAR
:bb[ddddccctttttttttttccc]dddd22	chr7:119433948-119434187(-)$1	239	81	113	17.7401
======[a[ccctttttttttttccca]====	chr16:72821493-72821755(-)$1	262	13	45	21.0048
gggggg!!eeeeesssssssssseeeee22gg	chr11:93454803-93455050(+)$1	247	143	175	16.0116
hhdddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:10822934-10823161(-)$1	227	54	86	19.5171
iiiiiieeeeeuuuuuuuuuuuueeeee]iii	chr11:122929539-122929777(-)$1	238	26	58	23.4717
!dddd[eeeeeuuuuuuuuuuuueeeeedddd	chrX:71495293-71495509(-)$1	216	108	140	22.4612
""dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:125937749-125938007(+)$1	258	132	164	20.0248
e[ccc[eeeeexxxxxxxxxxxxxxxeeeee]	chr20:30369971-30370208(+)$1	237	129	161	20.3677
=[a[bb^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:76449740-76449948(-)$1	208	33	65	20.3060
"""a[ffffff^^^^^^^^^^^^^^^^^^^^^	chr1:8934783-8935001(-)$1	218	155	187	19.4953
eeeebbxxxxxxxxxxxxxxxbb]eeeee333	chr17:38556415-38556673(-)$1	258	82	114	17.2626
dddd:ffffffuuuuuuuuuuuuffffff:::	chr11:5290778-5291008(-)$1	230	121	153	18.5177
gggggg!!eeeeesssssssssseeeee22gg	chr11:93454771-93454998(+)$1	227	175	207	16.0116
gggggg!!eeeeesssssssssseeeee22gg	chr11:93454852-93455079(+)$1	227	94	126	16.0116
e[ddddeeeeeuuuuuuuuuuuueeeee4444	chr3:186504429-186504650(+)$1	221	151	183	24.3773
eeeeegggggggtttttttttttggggggg:D	chr17:8076671-8076902(-)$1	231	88	120	18.0123
a[dddd^^^^^^^^^^^^^^^^^^dddd]a]c	chr1:29506021-29506296(-)$1	275	47	79	18.7126
b[ffffff[bbxxxxxxxxxxxxxxxbbffff	chr1:45243432-45243660(+)$1	228	158	190	18.3428
d[ffffffxxxxxxxxxxxxxxxffffff22d	chr15:66795095-66795320(-)$1	225	186	218	19.0169
:eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:102549270-102549477(-)$1	207	1	33	19.1750
++ffffffccctttttttttttccc]ffffff	chr7:119430712-119430948(-)$1	236	137	169	18.1806
fff!!ffffffuuuuuuuuuuuuffffff444	chr17:38555238-38555461(-)$1	223	153	185	22.7765
ddddddd!!bb^^^^^^^^^^^^^^^^^^^^^	chr10:51723901-51724152(+)$1	251	37	69	18.7285
Bffffff[cccuuuuuuuuuuuucccffffff	chr16:2204933-2205214(-)$1	281	82	114	21.2813
f[ffffffyyyyyyyyyyyyyyyyffffff]f	chr1:45244215-45244460(+)$1	245	170	202	21.4345
eeeee!!eeeeettttttttttteeeee6666	chr12:76448699-76448970(-)$1	271	117	149	20.7952
dddd:ffffffuuuuuuuuuuuuffffff:::	chr1:150530643-150530903(+)$1	260	66	98	18.5177
iffffff[bbvvvvvvvvvvvvvbbffffff]	chr22:39711117-39711364(-)$1	247	179	211	20.5485
gggggg[bbwwwwwwwwwwwwwwbb]gggggg	chr8:94748104-94748359(-)$1	255	29	61	21.0803
####bb!!cccuuuuuuuuuuuuccc22bb44	chr7:107144923-107145206(-)$1	283	10	42	22.2967
::::eeeeewwwwwwwwwwwwwweeeeeeeee	chr5:135416088-135416319(-)$1	231	140	172	18.0087
gg!!ggggggg^^^^^^^^^^^^^^^^^^ggg	chr18:75689318-75689592(-)$1	274	5	37	19.1386
eeeee!!ddddvvvvvvvvvvvvvdddd333e	chr2:47388758-47389000(-)$1	242	158	190	22.1975
===========vvvvvvvvvvvvv========	chr12:98993462-98993726(+)$1	264	88	120	22.4449
ccc[bb[dddduuuuuuuuuuuuddddbb333	chr5:140090812-140091043(+)$1	231	131	163	22.3735
!!iiiiiiiiivvvvvvvvvvvvviiiiiiii	chr11:67810673-67810988(+)$1	315	231	263	21.6515
c[ggggggga^^^^^^^^^^^^^^^^^^^^^a	chr12:104341332-104341586(+)$1	254	196	228	20.3851
=====:eeeeewwwwwwwwwwwwwweeeeeCC	chr9:136216196-136216426(+)$1	230	85	117	19.9575
####eeeeewwwwwwwwwwwwwweeeee4444	chr5:135416119-135416335(-)$1	216	156	188	23.5227
ff####eeeeeuuuuuuuuuuuueeeee333f	chr11:62620726-62620960(-)$1	234	115	147	23.6764
ggg!!ffffffvvvvvvvvvvvvvffffffgg	chr2:29149863-29150088(+)$1	225	35	67	21.4987
ccc####dddduuuuuuuuuuuudddd333cc	chr4:436009-436317(-)$1	308	22	54	22.3387
cccccbb[cccuuuuuuuuuuuuccc]bbggg	chr6:16266312-16266580(+)$1	268	120	152	21.6075
ggggg[a[cccwwwwwwwwwwwwwwccc]agg	chr4:774764-775059(-)$1	295	99	131	22.6939
""dddd[ddddyyyyyyyyyyyyyyyydddd]	chr15:66794273-66794528(-)$1	255	206	238	21.0278
eeeeegggggggtttttttttttggggggg:D	chr17:8076713-8076964(-)$1	251	150	182	18.0123
ffffffa[cccxxxxxxxxxxxxxxxccc]a]	chr3:39449885-39450131(+)$1	246	206	238	19.9076
ccc[bb[dddduuuuuuuuuuuuddddbb333	chr5:140090802-140091012(+)$1	210	141	173	22.3735
eeegggggggvvvvvvvvvvvvvggggggg66	chr2:85772082-85772330(+)$1	248	40	72	21.4733
eeebb!!eeeeettttttttttteeeee]bb]	chrX:70793452-70793759(+)$1	307	150	182	20.4065
hhhhhheeeeeyyyyyyyyyyyyyyyyeeeee	chr19:8532318-8532535(+)$1	217	72	104	20.6925
:ffffff^^^^^^^^^^^^^^^^^^^^^^^^^	chr13:107196029-107196277(-)$1	248	0	32	19.0927
=[a[bb^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:76449748-76449964(-)$1	216	49	81	20.3060
e[ddddeeeeeuuuuuuuuuuuueeeee4444	chr3:186504495-186504725(+)$1	230	85	117	24.3773
b[eeeeeccc^^^^^^^^^^^^^^^^^^^^^^	chrX:20154136-20154413(-)$1	277	219	251	20.0241
c[eeeee^^^^^^^^^^^^^^^^^^eeeee]c	chr10:70546202-70546434(+)$1	232	50	82	19.5042
e[ddddeeeeeuuuuuuuuuuuueeeee4444	chr3:186504450-186504670(+)$1	220	130	162	24.3773
eeeeegggggggtttttttttttggggggg:D	chr17:8076658-8076871(-)$1	213	57	89	18.0123
ffff::eeeeeuuuuuuuuuuuueeeee:ddd	chr7:119436974-119437230(-)$1	256	137	169	19.8462

#otherMatches

#Seq PSSM
gacauuaaugagcacuaaauaaucacuugaag	chr7:119433948-119434187(-)$1	239	81	113	17.7401
AGGCAGCGAGGAGCCACCUGAAGUCCCUCUGC	chr16:72821493-72821755(-)$1	262	13	45	21.0048
AAGCCUAAUCAUUUCUGGGCAAUGAUGAAAAG	chr11:93454803-93455050(+)$1	247	143	175	16.0116
GAGUUCUUGACGUUUUUCUCUCUUUUCUAUAC	chr11:10822934-10823161(-)$1	227	54	86	19.5171
UCUCUUGUUUGGCUUACUGAUAACAGAUAAAG	chr11:122929539-122929777(-)$1	238	26	58	23.4717
AUUCAUGGGUAAGAAGUUUUAAAUACUCUGGA	chrX:71495293-71495509(-)$1	216	108	140	22.4612
AAAGGAUGAAGAAAAAGAAGACCCCAAAGAAA	chr11:125937749-125938007(+)$1	258	132	164	20.0248
GACUCCUGUACUGCAAACCAAACACCGUGCAC	chr20:30369971-30370208(+)$1	237	129	161	20.3677
UGAAGAUGAGAAAAAAGAUGAAGAAAAAGAAG	chr12:76449740-76449948(-)$1	208	33	65	20.3060
ACCGUGCUUCAUUUUAAAAAUUUUCUACAAAU	chr1:8934783-8935001(-)$1	218	155	187	19.4953
AUAGGGAAUACCAUACAGAUACCACUGUGAAA	chr17:38556415-38556673(-)$1	258	82	114	17.2626
UGGACCCAGAGAUUUUUUGACAGCUUUGGAAA	chr11:5290778-5291008(-)$1	230	121	153	18.5177
AAGCCUAAUCAUUUCUGGGCAAUGAUGAAAAG	chr11:93454771-93454998(+)$1	227	175	207	16.0116
AAGCCUAAUCAUUUCUGGGCAAUGAUGAAAAG	chr11:93454852-93455079(+)$1	227	94	126	16.0116
CUGGGGUGGACCUCUUUCUUAAUGUCCAAUGU	chr3:186504429-186504650(+)$1	221	151	183	24.3773
ugcguaaucaggacuugcaacacccugauugc	chr17:8076671-8076902(-)$1	231	88	120	18.0123
UGAUUUGCUUGAAAAGAUGUGUUGAAAUGGCU	chr1:29506021-29506296(-)$1	275	47	79	18.7126
CACUGGGGUGUGCAGGGUUCGAGAAAGCUCCC	chr1:45243432-45243660(+)$1	228	158	190	18.3428
GUAAUUACUAAAAUUUGAGAAAUGUGAUUCUU	chr15:66795095-66795320(-)$1	225	186	218	19.0169
acuuccagaggaugaagaagagaaaaagaagc	chr14:102549270-102549477(-)$1	207	1	33	19.1750
aagccaugugguaauguaaucuccauuguggc	chr7:119430712-119430948(-)$1	236	137	169	18.1806
AAGAAGCCCAGCAAAAGGUAAUCUUGGGUGGC	chr17:38555238-38555461(-)$1	223	153	185	22.7765
caucuugaagugaaaugaaaugaaaugaaaug	chr10:51723901-51724152(+)$1	251	37	69	18.7285
CCGGGCUUGGGUUCCCUUAUUCUCCCAGUCUG	chr16:2204933-2205214(-)$1	281	82	114	21.2813
AAAGGUGUUUAUUGUUUUGUUCCCACAUUUAU	chr1:45244215-45244460(+)$1	245	170	202	21.4345
UCUGAAGCACUUGAAAGAUAUUAAAGUGAAGU	chr12:76448699-76448970(-)$1	271	117	149	20.7952
cagcagaaacuauuuacaaacaggguuucaua	chr1:150530643-150530903(+)$1	260	66	98	18.5177
GCCAGGGGACAACUUCUUAACACGUUCCUGGA	chr22:39711117-39711364(-)$1	247	179	211	20.5485
UGACAGCCUGUCUAAUUUUAUUGAGUCUGUUA	chr8:94748104-94748359(-)$1	255	29	61	21.0803
aaauuccuggaaacauacaacccuccuagauu	chr7:107144923-107145206(-)$1	283	10	42	22.2967
UAAAUUCGGUAUAAUCUGUCACUCUGAAGGCU	chr5:135416088-135416319(-)$1	231	140	172	18.0087
UCAGUGUGGUAGAGGGUCACAAAUAUGGAUGC	chr18:75689318-75689592(-)$1	274	5	37	19.1386
GCCUCAUUCUUCACUUUGAUUUUUAAGAUAAG	chr2:47388758-47389000(-)$1	242	158	190	22.1975
AUUGGCAUGUAAGAGAAAUAUACCUGCAUGUU	chr12:98993462-98993726(+)$1	264	88	120	22.4449
CUCUCCAGUCCUUUUACCUCUCUGGGCGGUUC	chr5:140090812-140091043(+)$1	231	131	163	22.3735
CGCGGCUUCCUCAUUGCCAGCUUCAGGGAGCU	chr11:67810673-67810988(+)$1	315	231	263	21.6515
CCUAAUCCCCUUCUCCCCUGCACUGUAAAAUG	chr12:104341332-104341586(+)$1	254	196	228	20.3851
GAGAGAUGGUGAUGACAUUUUAAACCACCAAG	chr9:136216196-136216426(+)$1	230	85	117	19.9575
UAAAUUCGGUAUAAUCUGUCACUCUGAAGGCU	chr5:135416119-135416335(-)$1	216	156	188	23.5227
CCGCCCCAGUCUGAUCAAUGUGUGACUGAAAG	chr11:62620726-62620960(-)$1	234	115	147	23.6764
UUUCGUGGUUUAGUGAGAAAGGGAAAGCCAAG	chr2:29149863-29150088(+)$1	225	35	67	21.4987
CAGACCUGAAUCAACACACGAAAAUUCUUACU	chr4:436009-436317(-)$1	308	22	54	22.3387
cacucgcugcgaagaaugaagaacgccgcgcg	chr6:16266312-16266580(+)$1	268	120	152	21.6075
UGGGGAGAGACCCCAGCCCUUUCCUGUCCCCC	chr4:774764-775059(-)$1	295	99	131	22.6939
UAAAAUGUUUGAUUUUUUUUUUUUCUCCAAAA	chr15:66794273-66794528(-)$1	255	206	238	21.0278
ugcguaaucaggacuugcaacacccugauugc	chr17:8076713-8076964(-)$1	251	150	182	18.0123
CUUAGGCAUCUAUAUCAUAAAUCUCAAGAGGA	chr3:39449885-39450131(+)$1	246	206	238	19.9076
CUCUCCAGUCCUUUUACCUCUCUGGGCGGUUC	chr5:140090802-140091012(+)$1	210	141	173	22.3735
AGGCCAAGGUGUCCUACAGAAAAACCUUGGGU	chr2:85772082-85772330(+)$1	248	40	72	21.4733
GACCACAUGAUUAAGCCUGUUGAAGUCACUGA	chrX:70793452-70793759(+)$1	307	150	182	20.4065
CAAGAAAUAGCCUUAAUUGUAAUACCAGCUAU	chr19:8532318-8532535(+)$1	217	72	104	20.6925
UGGUuuuuuguuuuuguuuuuguuuuuUUAAU	chr13:107196029-107196277(-)$1	248	0	32	19.0927
UGAAGAUGAGAAAAAAGAUGAAGAAAAAGAAG	chr12:76449748-76449964(-)$1	216	49	81	20.3060
CUGGGGUGGACCUCUUUCUUAAUGUCCAAUGU	chr3:186504495-186504725(+)$1	230	85	117	24.3773
ACCUGAGCUCAGAAAAAAGAAAGAAAGAAAGA	chrX:20154136-20154413(-)$1	277	219	251	20.0241
AAAAAAUUUGAAAUUUGAAUACUAUGUUUUCU	chr10:70546202-70546434(+)$1	232	50	82	19.5042
CUGGGGUGGACCUCUUUCUUAAUGUCCAAUGU	chr3:186504450-186504670(+)$1	220	130	162	24.3773
ugcguaaucaggacuugcaacacccugauugc	chr17:8076658-8076871(-)$1	213	57	89	18.0123
gucccaggucaggcagcauucaaugaccagcu	chr7:119436974-119437230(-)$1	256	137	169	19.8462

#DB
.((.(((((((...........))).))))..	chr7:119433948-119434187(-)$1	1	81	113	17.7401
((((((.(.(((...........)))).))))	chr16:72821493-72821755(-)$1	1	13	45	21.0048
((((((..(((((..........)))))..))	chr11:93454803-93455050(+)$1	1	143	175	16.0116
((((((..........................	chr11:10822934-10823161(-)$1	1	54	86	19.5171
(((((((((((............))))).)))	chr11:122929539-122929777(-)$1	1	26	58	23.4717
.((((.(((((............)))))))))	chrX:71495293-71495509(-)$1	1	108	140	22.4612
..((((..........................	chr11:125937749-125938007(+)$1	1	132	164	20.0248
(.(((.(((((...............))))).	chr20:30369971-30370208(+)$1	1	129	161	20.3677
(.(.((..........................	chr12:76449740-76449948(-)$1	1	33	65	20.3060
...(.((((((.....................	chr1:8934783-8935001(-)$1	1	155	187	19.4953
((((((...............)).)))))...	chr17:38556415-38556673(-)$1	1	82	114	17.2626
)))).((((((............))))))...	chr11:5290778-5291008(-)$1	1	121	153	18.5177
((((((..(((((..........)))))..))	chr11:93454771-93454998(+)$1	1	175	207	16.0116
((((((..(((((..........)))))..))	chr11:93454852-93455079(+)$1	1	94	126	16.0116
(.(((((((((............)))))....	chr3:186504429-186504650(+)$1	1	151	183	24.3773
)))))(((((((...........))))))).)	chr17:8076671-8076902(-)$1	1	88	120	18.0123
(.((((..................)))).).)	chr1:29506021-29506296(-)$1	1	47	79	18.7126
(.((((((.((...............))))))	chr1:45243432-45243660(+)$1	1	158	190	18.3428
(.((((((...............))))))..)	chr15:66795095-66795320(-)$1	1	186	218	19.0169
.(((((..........................	chr14:102549270-102549477(-)$1	1	1	33	19.1750
..(((((((((...........))).))))))	chr7:119430712-119430948(-)$1	1	137	169	18.1806
(((..((((((............))))))...	chr17:38555238-38555461(-)$1	1	153	185	22.7765
(((((((..((.....................	chr10:51723901-51724152(+)$1	1	37	69	18.7285
(((((((.(((............)))))))))	chr16:2204933-2205214(-)$1	1	82	114	21.2813
(.((((((................)))))).)	chr1:45244215-45244460(+)$1	1	170	202	21.4345
(((((..(((((...........)))))....	chr12:76448699-76448970(-)$1	1	117	149	20.7952
)))).((((((............))))))...	chr1:150530643-150530903(+)$1	1	66	98	18.5177
(((((((.((.............)))))))).	chr22:39711117-39711364(-)$1	1	179	211	20.5485
((((((.((..............)).))))))	chr8:94748104-94748359(-)$1	1	29	61	21.0803
....((..(((............)))..))..	chr7:107144923-107145206(-)$1	1	10	42	22.2967
....(((((..............)))))((((	chr5:135416088-135416319(-)$1	1	140	172	18.0087
((..(((((((..................)))	chr18:75689318-75689592(-)$1	1	5	37	19.1386
(((((..((((.............))))...)	chr2:47388758-47389000(-)$1	1	158	190	22.1975
(((((((((((.............))))))))	chr12:98993462-98993726(+)$1	1	88	120	22.4449
(((.((.((((............))))))...	chr5:140090812-140091043(+)$1	1	131	163	22.3735
..(((((((((.............))))))))	chr11:67810673-67810988(+)$1	1	231	263	21.6515
(.((((((((.....................)	chr12:104341332-104341586(+)$1	1	196	228	20.3851
))))).(((((..............)))))))	chr9:136216196-136216426(+)$1	1	85	117	19.9575
....(((((..............)))))....	chr5:135416119-135416335(-)$1	1	156	188	23.5227
((....(((((............)))))...)	chr11:62620726-62620960(-)$1	1	115	147	23.6764
(((..((((((.............))))))))	chr2:29149863-29150088(+)$1	1	35	67	21.4987
(((....((((............))))...))	chr4:436009-436317(-)$1	1	22	54	22.3387
)))))((.(((............))).))(((	chr6:16266312-16266580(+)$1	1	120	152	21.6075
(((((.(.(((..............))).)))	chr4:774764-775059(-)$1	1	99	131	22.6939
..((((.((((................)))).	chr15:66794273-66794528(-)$1	1	206	238	21.0278
)))))(((((((...........))))))).)	chr17:8076713-8076964(-)$1	1	150	182	18.0123
(((((((.(((...............))).).	chr3:39449885-39450131(+)$1	1	206	238	19.9076
(((.((.((((............))))))...	chr5:140090802-140091012(+)$1	1	141	173	22.3735
((((((((((.............)))))))..	chr2:85772082-85772330(+)$1	1	40	72	21.4733
(((((..(((((...........))))).)).	chrX:70793452-70793759(+)$1	1	150	182	20.4065
))))))(((((................)))))	chr19:8532318-8532535(+)$1	1	72	104	20.6925
.((((((.........................	chr13:107196029-107196277(-)$1	1	0	32	19.0927
(.(.((..........................	chr12:76449748-76449964(-)$1	1	49	81	20.3060
(.(((((((((............)))))....	chr3:186504495-186504725(+)$1	1	85	117	24.3773
(.((((((((......................	chrX:20154136-20154413(-)$1	1	219	251	20.0241
(.(((((..................))))).)	chr10:70546202-70546434(+)$1	1	50	82	19.5042
(.(((((((((............)))))....	chr3:186504450-186504670(+)$1	1	130	162	24.3773
)))))(((((((...........))))))).)	chr17:8076658-8076871(-)$1	1	57	89	18.0123
))))..(((((............))))).(((	chr7:119436974-119437230(-)$1	1	137	169	19.8462

#PSSM
e : 0.20	g : 0.11	c : 0.10	= : 0.08	f : 0.08	: : 0.06	d : 0.06	" : 0.05	h : 0.03	i : 0.03	! : 0.03	b : 0.03	# : 0.03	a : 0.01	+ : 0.01	B : 0.01	
[ : 0.22	e : 0.15	g : 0.11	f : 0.11	d : 0.06	c : 0.06	= : 0.05	" : 0.05	h : 0.03	# : 0.03	b : 0.01	i : 0.01	+ : 0.01	: : 0.01	! : 0.01	
d : 0.18	e : 0.18	f : 0.16	g : 0.11	c : 0.08	= : 0.05	# : 0.05	i : 0.03	a : 0.03	b : 0.01	" : 0.01	: : 0.01	! : 0.01	h : 0.01	
d : 0.18	e : 0.15	f : 0.15	g : 0.11	[ : 0.08	# : 0.06	= : 0.05	! : 0.05	i : 0.03	c : 0.03	a : 0.01	: : 0.01	b : 0.01	h : 0.01	
d : 0.16	e : 0.16	g : 0.13	f : 0.13	b : 0.11	= : 0.05	: : 0.05	i : 0.03	c : 0.03	! : 0.03	# : 0.03	[ : 0.01	h : 0.01	
f : 0.22	g : 0.16	d : 0.15	b : 0.11	e : 0.08	[ : 0.05	! : 0.05	= : 0.03	i : 0.03	: : 0.03	# : 0.03	h : 0.01	
e : 0.23	f : 0.20	! : 0.11	^ : 0.10	g : 0.10	[ : 0.08	d : 0.03	a : 0.03	x : 0.01	= : 0.01	i : 0.01	# : 0.01	b : 0.01	
e : 0.23	f : 0.15	^ : 0.13	d : 0.10	g : 0.10	! : 0.08	[ : 0.08	a : 0.01	x : 0.01	b : 0.01	= : 0.01	i : 0.01	c : 0.01	
e : 0.28	c : 0.13	^ : 0.13	g : 0.10	f : 0.08	d : 0.08	[ : 0.03	x : 0.03	b : 0.03	! : 0.01	y : 0.01	= : 0.01	i : 0.01	
e : 0.25	c : 0.15	^ : 0.13	f : 0.08	g : 0.08	d : 0.08	b : 0.05	w : 0.05	x : 0.03	y : 0.01	= : 0.01	i : 0.01	a : 0.01	
e : 0.25	^ : 0.16	c : 0.13	f : 0.08	d : 0.08	g : 0.06	w : 0.05	x : 0.03	b : 0.03	v : 0.03	y : 0.01	= : 0.01	i : 0.01	
u : 0.27	^ : 0.22	v : 0.10	e : 0.08	x : 0.08	w : 0.08	g : 0.05	y : 0.05	t : 0.03	c : 0.01	
u : 0.27	^ : 0.22	t : 0.13	v : 0.10	x : 0.08	w : 0.08	e : 0.05	y : 0.05	
u : 0.27	^ : 0.22	t : 0.13	v : 0.10	x : 0.08	w : 0.08	s : 0.05	y : 0.05	
u : 0.27	^ : 0.22	t : 0.13	v : 0.10	x : 0.08	w : 0.08	s : 0.05	y : 0.05	
u : 0.27	^ : 0.22	t : 0.13	v : 0.10	x : 0.08	w : 0.08	s : 0.05	y : 0.05	
u : 0.27	^ : 0.22	t : 0.13	v : 0.10	x : 0.08	w : 0.08	s : 0.05	y : 0.05	
u : 0.27	^ : 0.22	t : 0.13	v : 0.10	x : 0.08	w : 0.08	s : 0.05	y : 0.05	
u : 0.27	^ : 0.22	t : 0.13	v : 0.10	x : 0.08	w : 0.08	s : 0.05	y : 0.05	
u : 0.27	^ : 0.22	t : 0.13	v : 0.10	x : 0.08	w : 0.08	s : 0.05	y : 0.05	
u : 0.27	^ : 0.22	t : 0.13	v : 0.10	x : 0.08	w : 0.08	s : 0.05	y : 0.05	
u : 0.27	^ : 0.22	t : 0.13	v : 0.10	w : 0.08	x : 0.06	s : 0.05	y : 0.05	b : 0.01	
u : 0.27	^ : 0.22	t : 0.10	v : 0.10	w : 0.08	x : 0.06	s : 0.05	y : 0.05	c : 0.03	b : 0.01	
e : 0.23	^ : 0.22	c : 0.10	f : 0.06	g : 0.06	v : 0.06	x : 0.05	y : 0.05	d : 0.05	b : 0.03	w : 0.03	] : 0.01	
e : 0.25	^ : 0.20	c : 0.10	f : 0.10	d : 0.08	g : 0.06	x : 0.05	b : 0.03	w : 0.03	y : 0.03	= : 0.01	i : 0.01	
e : 0.28	^ : 0.18	f : 0.11	c : 0.08	d : 0.08	g : 0.06	] : 0.05	x : 0.05	y : 0.03	= : 0.01	i : 0.01	
e : 0.30	^ : 0.18	f : 0.15	d : 0.10	g : 0.08	c : 0.03	y : 0.03	a : 0.01	b : 0.01	2 : 0.01	= : 0.01	i : 0.01	] : 0.01	
e : 0.32	^ : 0.18	f : 0.15	g : 0.08	d : 0.06	b : 0.06	c : 0.03	] : 0.01	2 : 0.01	= : 0.01	i : 0.01	3 : 0.01	
^ : 0.18	f : 0.16	e : 0.10	g : 0.08	] : 0.06	4 : 0.06	b : 0.06	d : 0.05	2 : 0.05	3 : 0.05	= : 0.03	6 : 0.01	i : 0.01	c : 0.01	: : 0.01	
^ : 0.16	g : 0.11	3 : 0.10	f : 0.10	e : 0.08	4 : 0.08	d : 0.06	2 : 0.06	= : 0.03	i : 0.03	: : 0.03	a : 0.03	b : 0.03	6 : 0.01	] : 0.01	
^ : 0.16	g : 0.13	4 : 0.10	3 : 0.08	: : 0.08	f : 0.06	d : 0.05	e : 0.05	] : 0.05	2 : 0.03	= : 0.03	i : 0.03	6 : 0.03	C : 0.01	c : 0.01	a : 0.01	b : 0.01	
^ : 0.15	g : 0.13	4 : 0.10	] : 0.08	f : 0.08	d : 0.05	3 : 0.05	D : 0.05	c : 0.05	e : 0.05	= : 0.03	i : 0.03	: : 0.03	6 : 0.03	2 : 0.01	a : 0.01	C : 0.01	

#score	1202.4122278936088
#seq	59
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_UTR_m2_run2.txt

#BEAR
eeee[bb[ccc$$$$$cccmmmmccc4444ccc22bbeee	chr12:16052736-16053026(+)$1	290	131	171	12.3886
iiiiiiiii$$$$$ddddoooooodddd4444iiiiiiii	chr11:62392518-62392761(-)$1	243	18	58	17.6499
ggggg==========bblllbb]==========333gggg	chr15:58256048-58256312(-)$1	264	115	155	13.0300
e####==========cccooooooccc4444=========	chr11:116658123-116658337(-)$1	214	157	197	19.3075
iiiiibbdddd"""ddddoooooodddd]dddd]bb:FFF	chr16:89627889-89628108(+)$1	219	93	133	13.3733
####bb!!dddd"""bboooooobb4444ddddbb4444c	chr4:95588941-95589234(+)$1	293	169	209	13.3201
"eeeee!!ccc!!eeeeeooooooeeeee]ccc22eeeee	chr8:17141919-17142163(+)$1	244	68	108	14.9469
]eeeee:dddd[ccccccooooooccc]ccc333dddd:e	chr17:26902229-26902452(-)$1	223	142	182	13.3890
eeeeeee"""ccc[ddddoooooodddd]ccc4444eeee	chr1:38268815-38269034(-)$1	219	165	205	16.6761
[ffffff[ccc[bb[cccooooooccc22bbccc]fffff	chr7:77268619-77268863(+)$1	244	80	120	15.4368
fff$$$$$bb[cccddddoooooodddd]ccc]bb22fff	chr3:185324106-185324386(+)$1	280	147	187	13.7324
dd[cccggggggg!!ccclllccc22ggggggg333ccc]	chr3:130712697-130713043(+)$1	346	74	114	12.3865
!!ggggggg####eeeeeooooooeeeee4444ggggggg	chr5:138705190-138705435(+)$1	245	150	190	16.1671
eeccc"""eeeee[ccccccnnnnnccc]ccc333eeeee	chr5:10679476-10679726(-)$1	250	85	125	13.1766
[ggggggg[eeeeeddddnnnnndddd]eeeee4444ggg	chr2:171811058-171811328(+)$1	270	149	189	12.6119
!!=============[aaooooooa]a=============	chr2:85808673-85808938(+)$1	265	80	120	18.1624
dddd"""==========cccmmmmccc]==========dd	chr5:68467081-68467348(+)$1	267	168	208	13.8905
c!!ccca[eeeeea[addddmmmmdddd]a]a4444eeee	chr3:5260063-5260304(+)$1	241	122	162	12.8371
ggggeeeee!!bb!!cccooooooccc22bb]eeeee22g	chr14:23421455-23421764(-)$1	309	168	208	15.0553
dd[iiiiiiiii"""ddddmmmmddddiiiiiiiii]ddd	chr2:182780994-182781255(+)$1	261	161	201	13.0466
:bb[ggggggg[bb[cccooooooccc22bb]gggggggb	chr11:3062030-3062314(-)$1	284	173	213	15.0910
eeeee[a[dddd!!ddddoooooodddd4444dddd]a]e	chr17:37009852-37010081(-)$1	229	36	76	16.0743
ccc!!ggggggg!!ddddoooooodddd333gggggggcc	chr4:76734843-76735110(+)$1	267	196	236	17.6994
c[==============[bboooooobb22===========	chr6:36936346-36936595(-)$1	249	39	79	16.9192
ccc[a"""a[dddd[ddddnnnnndddd]dddd]a]a]cc	chr8:37993096-37993382(+)$1	286	195	235	13.6603
ggggg"""ccc[a!!cccooooooccc22accc333gggg	chr1:154129548-154129806(-)$1	258	159	199	19.9580
ddd[bb[ccc!!ccc!!bboooooobb333ccc22cccbb	chr11:65660555-65660844(-)$1	289	226	266	14.6918
dbb[a[bb[cccddddcccnnnnnccc22dddd]ccc]bb	chr12:121789836-121790162(-)$1	326	179	219	12.4226
iiiii"""ccc"""cccqqqqqqqqccc333ccc22iiii	chr11:62397786-62398001(-)$1	215	146	186	13.7234
eiiiiiiiii[dddda[ccclllccc]a]dddd333iiii	chr19:11258389-11258638(-)$1	249	160	200	14.2764
cc!!eeeee[a"""ddddoooooodddd333a]eeeee22	chr12:16056193-16056474(+)$1	281	3	43	16.2391
gggg[ccc[dddd[ddddoooooodddddddd]ccc]ggg	chr8:124220136-124220373(+)$1	237	170	210	15.6306
ffbbdddd[ccca"""bboooooobb4444a]cccdddd]	chr2:130939842-130940112(+)$1	270	189	229	14.3200
iiiiiii[ccc"""ffffffooooooffffff4444ccc6	chr12:56553680-56553927(+)$1	247	192	232	13.3062
ccc[==========!!bblllbb]==========]ccc44	chr11:32608455-32608738(+)$1	283	118	158	13.4632
ccc[a[dddd[cccddddoooooodddd]cccdddd]a]c	chr4:144793080-144793358(-)$1	278	38	78	15.5096
eegggggggeeeee[cccooooooccceeeee333ggggg	chr1:156288658-156288909(-)$1	251	134	174	16.7274
eeeedddd!!a[ccc[bboooooobb]ccc]a4444dddd	chr14:20917227-20917465(-)$1	238	105	145	14.3047
"dddd[ccc[dddd!!cccnnnnnccc22dddd]ccc]dd	chr20:42295795-42296044(+)$1	249	72	112	12.8405
iii"""ggggggg!!eeeeemmmmeeeee4444ggggggg	chr16:2110659-2110886(+)$1	227	91	131	12.9499
c"""ccc[ccc####cccooooooccc4444ccc]ccc33	chr8:19689438-19689688(+)$1	250	150	190	18.6960
iiiiii[ccc$$$$$cccooooooccc55555ccc]iiii	chr1:53287699-53287959(+)$1	260	166	206	14.4086
bb[gggggggeeeee[bboooooobb22eeeee333gggg	chr11:62397004-62397254(-)$1	250	126	166	14.7401
ccc####ccc[ccc[ccc[arrrrrrrrra]ccc]ccc]c	chr10:99225768-99225996(-)$1	228	172	212	12.3845
Bbb!!==========xxxxxxxxxxxxxxx==========	chr7:12391170-12391414(-)$1	244	76	116	12.0099
ffffff!!ccc[ddddrrrrrrrrrdddd]ccc]ffffff	chr22:36677766-36678016(-)$1	250	192	232	11.3101
hhhhh[a!!dddd[ddddoooooodddddddd22a]hhhh	chr10:74767517-74767785(-)$1	268	119	159	14.6627
ccc[ggggggg!!a[cccoooooocccagggggggccc]d	chr15:83685977-83686212(-)$1	235	178	218	17.0853
eccc[dddd[ccc!!a!!ccclllccc22a4444ccc]dd	chr3:195791111-195791363(-)$1	252	139	179	13.7266
===bb[bb"""ccc"""cccmmmmccc22ccc333bb]bb	chr14:60750118-60750357(+)$1	239	102	142	12.7987
::ccc!!bb!!gggggggooooooggggggg4444bb22c	chr1:45976877-45977090(-)$1	213	58	98	12.8556

#otherMatches

#Seq PSSM
ACUGUGUGAGAUUUAGUCCUGAUGGAGAACUCUAUGCCAG	chr12:16052736-16053026(+)$1	290	131	171	12.3886
GGAGUGAGGUUGCUAAAGAACAUCCUUUUCCCUCUCAUUC	chr11:62392518-62392761(-)$1	243	18	58	17.6499
UCGCAUCUUCGUGGAGGAGUCCAUCUAUGAGGAGUUUGUG	chr15:58256048-58256312(-)$1	264	115	155	13.0300
CAGGUACCUCAGUAUUCUAGAGAGAGAUUCGGUACUGGGG	chr11:116658123-116658337(-)$1	214	157	197	19.3075
CAGGUGGCCGGCAUUCACAAGAAGGUGGCCCGGACCAUCG	chr16:89627889-89628108(+)$1	219	93	133	13.3733
UACUGAAUAGUUUUACACAAAUUUGAUCUGGCUUCCAUUU	chr4:95588941-95589234(+)$1	293	169	209	13.3201
AGUGCAAGUGCCCUUCAGGCAAGAUUGAAAGUAGCUGCAC	chr8:17141919-17142163(+)$1	244	68	108	14.9469
CAGAGGAGAACCGCCGGCUGUACCGCCAGGUCCUGUUCAG	chr17:26902229-26902452(-)$1	223	142	182	13.3890
AGGGGUUCAGUCCAAAUGGAAGAAUAUUGGGAAAUAAACC	chr1:38268815-38269034(-)$1	219	165	205	16.6761
UGUAGAUUGUUACCUUAAUAUUUUUUGCUGGGACCAUCUA	chr7:77268619-77268863(+)$1	244	80	120	15.4368
GGUCUGAGGCGUCCCCAUUGUACUGUGGAGGAGGUAAGCC	chr3:185324106-185324386(+)$1	280	147	187	13.7324
CUAGUCGCUACAGAAGAACGGUUCAGUUGUAGCCAUGACA	chr3:130712697-130713043(+)$1	346	74	114	12.3865
Gaaaauauuguaaaaaaauuauauuuuuucaaaaauauuu	chr5:138705190-138705435(+)$1	245	150	190	16.1671
UGCCUUUCGGAGCAGCACCCAGGAGGGGAUGCCGCGCUCC	chr5:10679476-10679726(-)$1	250	85	125	13.1766
CCCAUUUGAGGAAGGAAAGAAAAUUUCUCUUCCAGGACAA	chr2:171811058-171811328(+)$1	270	149	189	12.6119
ACGUGAAGAUGAUUGUCCUUAUCUGCGUGAUUGUUUUUAU	chr2:85808673-85808938(+)$1	265	80	120	18.1624
GAUAUUUAUGCUUAUCUGAGACAACUUGAGGUAAGUAUUA	chr5:68467081-68467348(+)$1	267	168	208	13.8905
UUUGCCCCAGGAUUGCCUCAAAUCUGAGUGGACUUCAUCC	chr3:5260063-5260304(+)$1	241	122	162	12.8371
UUGCUUGUGGACUACUAUGUGAAGAUACAAGACACAAAUG	chr14:23421455-23421764(-)$1	309	168	208	15.0553
UAUGAGAAAAAGUAUGUUAUCAUUAGCUUUUUUCUUUUAC	chr2:182780994-182781255(+)$1	261	161	201	13.0466
ACAUGGGGCACGCCAGGUAGGUCCACCGCGGGGUGUCCCU	chr11:3062030-3062314(-)$1	284	173	213	15.0910
GAGGAGGGUGGGCGGGGCGUUAAAGUUCAUAUCCCAGUGU	chr17:37009852-37010081(-)$1	229	36	76	16.0743
CCGAAGGAUGCUGACACACAGUGAUGUGGAGGGCAUUCCG	chr4:76734843-76735110(+)$1	267	196	236	17.6994
UUCAGUUCCAUAUUUGCCAUGUGUCUGUCCAGAUGUGGGG	chr6:36936346-36936595(-)$1	249	39	79	16.9192
CAUGUUUCCAUCCCAUGAGCAAAACUUGAGGGAAGCAGAU	chr8:37993096-37993382(+)$1	286	195	235	13.6603
AGAGCCCAGGGAGACUCCGCUGUGGGAAACCUCAUUGUUC	chr1:154129548-154129806(-)$1	258	159	199	19.9580
UACCAGUGGCACCAGCAGCCCACCAGCCCCCUGCCGCCCU	chr11:65660555-65660844(-)$1	289	226	266	14.6918
UCAUGGAGCGGCGGAGGCUCAACCAGCUGCUCCUGCCCCU	chr12:121789836-121790162(-)$1	326	179	219	12.4226
GCCAGGUAAGCAGACCCAGAAUUGAGGGAGAGUUGAUUGG	chr11:62397786-62398001(-)$1	215	146	186	13.7234
agccauuuuaacccuugugcacuguagguagggacauaaa	chr19:11258389-11258638(-)$1	249	160	200	14.2764
AGGGUUCUUGUAGCUGUUUAUGUUAAUAUGGAGAAGAAAA	chr12:16056193-16056474(+)$1	281	3	43	16.2391
ACUGAGAGAUAGAUGGUAGUUUGGUACUUCUGGUUCCCAG	chr8:124220136-124220373(+)$1	237	170	210	15.6306
GGGGCGGGUGGGGGCCGCAUGCUAGCCAGACACCCCCCGA	chr2:130939842-130940112(+)$1	270	189	229	14.3200
ACAAGGAAGGAAAUGGCACCGUCAUGGGUGCUGAAAUCCG	chr12:56553680-56553927(+)$1	247	192	232	13.3062
CUUAUCUGAAAUCUAAAGGAGCUGAGAUUUCAGAAGAGAA	chr11:32608455-32608738(+)$1	283	118	158	13.4632
gccugacggcuguagcuacuaacuuggcuuacguugacug	chr4:144793080-144793358(-)$1	278	38	78	15.5096
UUGCGUGGAGUCAUGAUUAACAAGGAUGUGACCCAUCCAC	chr1:156288658-156288909(-)$1	251	134	174	16.7274
UUGUCUGGAUCGUUUUGCUCGAGUGCUGAAGGUAAGCCAG	chr14:20917227-20917465(-)$1	238	105	145	14.3047
cccgcuccgggcucugccggcgggcgggcgagcgcggcgc	chr20:42295795-42296044(+)$1	249	72	112	12.8405
GCUCCAGGUGGUGGCGUGGGACAUUCUGCUGAACAUCAUC	chr16:2110659-2110886(+)$1	227	91	131	12.9499
AGAAUCUUCCUCACUGAUAUGAUCAUCUAUCAGGUAGAGU	chr8:19689438-19689688(+)$1	250	150	190	18.6960
AUGAAGGUAGAACAGAGUGUAGGAACUGGGAAUUGGUUUC	chr1:53287699-53287959(+)$1	260	166	206	14.4086
AGCGCUCUGGGGGCAUGGAACGCCCCUUUGUCCUGGCCAG	chr11:62397004-62397254(-)$1	250	126	166	14.7401
UGCGUGUAGGUAUGUGUCUCUAAUCCUCUGUGGCCCAUCC	chr10:99225768-99225996(-)$1	228	172	212	12.3845
UGAAACACAGUUUGUAAAUCAAUUUACUACACAAACUGUG	chr7:12391170-12391414(-)$1	244	76	116	12.0099
ACUGGGCCCGAGGGUGGUUUACCUGCACCGUUGACUCAGU	chr22:36677766-36678016(-)$1	250	192	232	11.3101
UUAGUAUUUCACUACAUCUCAGUUGGUGGGUGUUAAGCUA	chr10:74767517-74767785(-)$1	268	119	159	14.6627
UGACGGUGAUGACGACUGGGUGAACAGCCAUCACUUCAAC	chr15:83685977-83686212(-)$1	235	178	218	17.0853
UCCUAUUGAAACUUGCCCAGAUGUUCUCAGAUAUGGUCUU	chr3:195791111-195791363(-)$1	252	139	179	13.7266
UUUGCAAUGAAGUAGUCGACACCUGUUUGUAUAAGGUAGC	chr14:60750118-60750357(+)$1	239	102	142	12.7987
AGAGCAAAGAAUAUUUCUCCAAGCAGAAGUGAGCGCUGGG	chr1:45976877-45977090(-)$1	213	58	98	12.8556

#DB
((((.((.(((.....(((....)))....)))..)))))	chr12:16052736-16053026(+)$1	1	131	171	12.3886
(((((((((.....((((......))))....))))))))	chr11:62392518-62392761(-)$1	1	18	58	17.6499
(((((((((((((((((...)).))))))))))...))))	chr15:58256048-58256312(-)$1	1	115	155	13.0300
(....(((((((((((((......)))....)))))))))	chr11:116658123-116658337(-)$1	1	157	197	19.3075
)))))((((((...((((......)))).)))).)).)))	chr16:89627889-89628108(+)$1	1	93	133	13.3733
....((..((((...((......))....))))))....)	chr4:95588941-95589234(+)$1	1	169	209	13.3201
.(((((..(((..(((((......))))).)))..)))))	chr8:17141919-17142163(+)$1	1	68	108	14.9469
.))))).((((.((((((......))).)))...)))).(	chr17:26902229-26902452(-)$1	1	142	182	13.3890
))(((((...(((.((((......)))).)))....))))	chr1:38268815-38269034(-)$1	1	165	205	16.6761
.((((((.(((.((.(((......)))..))))).)))))	chr7:77268619-77268863(+)$1	1	80	120	15.4368
(((.....((.(((((((......)))).))).))..)))	chr3:185324106-185324386(+)$1	1	147	187	13.7324
((.((((((((((..(((...)))..)))))))...))).	chr3:130712697-130713043(+)$1	1	74	114	12.3865
..(((((((....(((((......)))))....)))))))	chr5:138705190-138705435(+)$1	1	150	190	16.1671
(((((...(((((.((((((.....))).)))...)))))	chr5:10679476-10679726(-)$1	1	85	125	13.1766
.(((((((.(((((((((.....)))).)))))....)))	chr2:171811058-171811328(+)$1	1	149	189	12.6119
..(((((((((((((.((......).))))))))))))))	chr2:85808673-85808938(+)$1	1	80	120	18.1624
((((...(((((((((((((....))).))))))))))))	chr5:68467081-68467348(+)$1	1	168	208	13.8905
(..((((.((((((.(((((....)))).).)....))))	chr3:5260063-5260304(+)$1	1	122	162	12.8371
(((((((((..((..(((......)))..)).)))))..)	chr14:23421455-23421764(-)$1	1	168	208	15.0553
((.(((((((((...((((....))))))))))))).)))	chr2:182780994-182781255(+)$1	1	161	201	13.0466
.((.(((((((.((.(((......)))..)).))))))))	chr11:3062030-3062314(-)$1	1	173	213	15.0910
(((((.(.((((..((((......))))....)))).).)	chr17:37009852-37010081(-)$1	1	36	76	16.0743
(((..(((((((..((((......))))...)))))))))	chr4:76734843-76735110(+)$1	1	196	236	17.6994
(.((((((((((((((.((......))..)))))))))))	chr6:36936346-36936595(-)$1	1	39	79	16.9192
(((.(...(.((((.((((.....)))).)))).).).))	chr8:37993096-37993382(+)$1	1	195	235	13.6603
(((((...(((.(..(((......)))..))))...))))	chr1:154129548-154129806(-)$1	1	159	199	19.9580
(((.((.(((..(((..((......))...)))..)))))	chr11:65660555-65660844(-)$1	1	226	266	14.6918
(((.(.((.((((((((((.....)))..)))).))).))	chr12:121789836-121790162(-)$1	1	179	219	12.4226
(((((...(((...(((........)))...)))..))))	chr11:62397786-62398001(-)$1	1	146	186	13.7234
)(((((((((.(((((.(((...))).).))))...))))	chr19:11258389-11258638(-)$1	1	160	200	14.2764
((..(((((.(...((((......))))...).)))))..	chr12:16056193-16056474(+)$1	1	3	43	16.2391
((((.(((.((((.((((......)))))))).))).)))	chr8:124220136-124220373(+)$1	1	170	210	15.6306
((((((((.((((...((......))....).))))))).	chr2:130939842-130940112(+)$1	1	189	229	14.3200
(((((((.(((...((((((......))))))....))).	chr12:56553680-56553927(+)$1	1	192	232	13.3062
(((.((((((((((..((...)).)))))))))).)))..	chr11:32608455-32608738(+)$1	1	118	158	13.4632
(((.(.((((.(((((((......)))).))))))).).)	chr4:144793080-144793358(-)$1	1	38	78	15.5096
))((((((((((((.(((......))))))))...)))))	chr1:156288658-156288909(-)$1	1	134	174	16.7274
))))((((..(.(((.((......)).))).)....))))	chr14:20917227-20917465(-)$1	1	105	145	14.3047
.((((.(((.((((..(((.....)))..)))).))).))	chr20:42295795-42296044(+)$1	1	72	112	12.8405
(((...(((((((..(((((....)))))....)))))))	chr16:2110659-2110886(+)$1	1	91	131	12.9499
(...(((.(((....(((......)))....))).)))..	chr8:19689438-19689688(+)$1	1	150	190	18.6960
((((((.(((.....(((......))).....))).))))	chr1:53287699-53287959(+)$1	1	166	206	14.4086
((.((((((((((((.((......))..)))))...))))	chr11:62397004-62397254(-)$1	1	126	166	14.7401
(((....(((.(((.(((.(.........).))).))).)	chr10:99225768-99225996(-)$1	1	172	212	12.3845
(((..((((((((((...............))))))))))	chr7:12391170-12391414(-)$1	1	76	116	12.0099
((((((..(((.((((.........)))).))).))))))	chr22:36677766-36678016(-)$1	1	192	232	11.3101
(((((.(..((((.((((......))))))))..).))))	chr10:74767517-74767785(-)$1	1	119	159	14.6627
(((.(((((((..(.(((......)))))))))))))).)	chr15:83685977-83686212(-)$1	1	178	218	17.0853
((((.((((.(((..(..(((...)))..)....))).))	chr3:195791111-195791363(-)$1	1	139	179	13.7266
(((((.((...(((...(((....)))..)))...)).))	chr14:60750118-60750357(+)$1	1	102	142	12.7987
..(((..((..(((((((......)))))))....))..)	chr1:45976877-45977090(-)$1	1	58	98	12.8556

#PSSM
c : 0.19	e : 0.17	i : 0.11	d : 0.09	g : 0.07	f : 0.05	" : 0.03	[ : 0.03	! : 0.03	: : 0.03	# : 0.01	] : 0.01	b : 0.01	B : 0.01	h : 0.01	= : 0.01	
e : 0.15	c : 0.15	i : 0.13	g : 0.09	d : 0.09	f : 0.07	b : 0.07	! : 0.05	# : 0.03	[ : 0.01	" : 0.01	h : 0.01	= : 0.01	: : 0.01	
c : 0.17	i : 0.13	g : 0.13	e : 0.11	b : 0.07	f : 0.05	[ : 0.05	= : 0.05	d : 0.05	# : 0.03	! : 0.03	" : 0.01	h : 0.01	
g : 0.15	i : 0.13	[ : 0.13	e : 0.11	c : 0.09	# : 0.05	! : 0.05	f : 0.03	= : 0.03	d : 0.03	b : 0.03	" : 0.03	$ : 0.01	h : 0.01	
g : 0.15	i : 0.13	e : 0.11	c : 0.09	[ : 0.05	b : 0.05	= : 0.05	a : 0.05	d : 0.05	# : 0.03	f : 0.03	" : 0.03	! : 0.03	$ : 0.01	h : 0.01	
g : 0.13	= : 0.11	" : 0.11	[ : 0.11	i : 0.09	e : 0.09	b : 0.07	c : 0.07	d : 0.05	f : 0.03	$ : 0.01	# : 0.01	! : 0.01	
g : 0.17	= : 0.11	" : 0.09	b : 0.07	i : 0.07	! : 0.07	d : 0.07	e : 0.05	a : 0.05	c : 0.05	[ : 0.03	: : 0.01	f : 0.01	$ : 0.01	# : 0.01	
g : 0.17	= : 0.13	[ : 0.11	d : 0.11	" : 0.09	c : 0.09	! : 0.07	i : 0.05	b : 0.05	e : 0.03	$ : 0.01	
c : 0.23	g : 0.15	= : 0.13	d : 0.11	e : 0.07	[ : 0.07	i : 0.05	" : 0.03	b : 0.03	! : 0.03	a : 0.01	
c : 0.25	= : 0.13	d : 0.13	g : 0.11	e : 0.07	[ : 0.07	! : 0.05	" : 0.03	i : 0.03	$ : 0.01	b : 0.01	# : 0.01	
c : 0.23	d : 0.15	= : 0.13	g : 0.09	e : 0.09	[ : 0.07	! : 0.05	$ : 0.03	a : 0.03	# : 0.01	i : 0.01	" : 0.01	
c : 0.15	= : 0.13	d : 0.13	[ : 0.11	e : 0.09	" : 0.07	g : 0.07	$ : 0.05	! : 0.05	# : 0.03	b : 0.01	i : 0.01	
c : 0.17	= : 0.13	d : 0.13	" : 0.11	e : 0.09	! : 0.07	$ : 0.05	b : 0.05	g : 0.05	# : 0.03	a : 0.03	
= : 0.13	" : 0.13	c : 0.13	! : 0.13	e : 0.09	d : 0.09	[ : 0.07	$ : 0.05	b : 0.03	a : 0.03	# : 0.01	g : 0.01	
d : 0.27	[ : 0.13	! : 0.13	= : 0.11	c : 0.09	" : 0.07	e : 0.05	$ : 0.03	f : 0.01	# : 0.01	g : 0.01	
d : 0.29	c : 0.27	e : 0.05	[ : 0.05	a : 0.05	! : 0.05	b : 0.03	= : 0.03	" : 0.03	$ : 0.01	f : 0.01	x : 0.01	g : 0.01	
c : 0.33	d : 0.27	b : 0.11	e : 0.05	[ : 0.03	! : 0.03	a : 0.01	= : 0.01	f : 0.01	x : 0.01	r : 0.01	" : 0.01	g : 0.01	
c : 0.37	d : 0.27	b : 0.11	e : 0.05	l : 0.01	o : 0.01	a : 0.01	q : 0.01	f : 0.01	x : 0.01	r : 0.01	! : 0.01	g : 0.01	
o : 0.54	c : 0.15	l : 0.05	d : 0.05	b : 0.03	n : 0.01	q : 0.01	f : 0.01	e : 0.01	[ : 0.01	x : 0.01	r : 0.01	
o : 0.58	c : 0.09	n : 0.07	l : 0.05	m : 0.03	d : 0.01	q : 0.01	f : 0.01	e : 0.01	a : 0.01	x : 0.01	r : 0.01	
o : 0.60	m : 0.11	n : 0.09	l : 0.05	r : 0.03	b : 0.01	q : 0.01	x : 0.01	c : 0.01	
o : 0.60	m : 0.11	n : 0.09	b : 0.03	l : 0.03	r : 0.03	c : 0.01	q : 0.01	x : 0.01	
o : 0.60	m : 0.11	n : 0.09	l : 0.03	r : 0.03	] : 0.01	c : 0.01	q : 0.01	b : 0.01	x : 0.01	
o : 0.58	n : 0.07	m : 0.07	c : 0.05	d : 0.03	r : 0.03	= : 0.01	b : 0.01	q : 0.01	] : 0.01	x : 0.01	l : 0.01	
c : 0.33	d : 0.27	b : 0.07	e : 0.05	o : 0.05	= : 0.03	r : 0.03	2 : 0.01	n : 0.01	a : 0.01	q : 0.01	x : 0.01	g : 0.01	
c : 0.37	d : 0.29	b : 0.09	e : 0.05	= : 0.03	4 : 0.01	2 : 0.01	] : 0.01	o : 0.01	r : 0.01	x : 0.01	g : 0.01	
c : 0.33	d : 0.29	4 : 0.05	e : 0.05	= : 0.03	g : 0.03	b : 0.03	] : 0.03	a : 0.01	f : 0.01	2 : 0.01	r : 0.01	x : 0.01	
d : 0.25	2 : 0.19	4 : 0.09	e : 0.07	= : 0.05	] : 0.05	c : 0.05	g : 0.03	a : 0.03	i : 0.01	3 : 0.01	f : 0.01	5 : 0.01	r : 0.01	x : 0.01	
2 : 0.17	] : 0.15	4 : 0.13	e : 0.11	= : 0.07	3 : 0.07	g : 0.05	d : 0.05	c : 0.03	i : 0.01	f : 0.01	5 : 0.01	r : 0.01	x : 0.01	
4 : 0.15	d : 0.15	c : 0.13	= : 0.09	a : 0.07	3 : 0.07	b : 0.05	g : 0.05	e : 0.05	] : 0.03	i : 0.01	f : 0.01	5 : 0.01	x : 0.01	
c : 0.21	d : 0.15	4 : 0.13	= : 0.11	b : 0.05	g : 0.05	e : 0.05	] : 0.05	3 : 0.05	i : 0.01	a : 0.01	f : 0.01	5 : 0.01	
c : 0.27	d : 0.15	= : 0.13	4 : 0.11	g : 0.05	e : 0.05	a : 0.05	] : 0.05	3 : 0.01	i : 0.01	f : 0.01	5 : 0.01	
c : 0.21	d : 0.15	4 : 0.15	= : 0.13	3 : 0.07	g : 0.07	] : 0.05	e : 0.05	i : 0.03	2 : 0.01	
3 : 0.17	4 : 0.13	c : 0.13	= : 0.11	] : 0.09	g : 0.09	2 : 0.07	i : 0.03	b : 0.03	e : 0.03	d : 0.03	
3 : 0.15	4 : 0.11	c : 0.11	= : 0.09	g : 0.09	2 : 0.07	] : 0.07	b : 0.05	d : 0.05	i : 0.03	e : 0.03	a : 0.03	f : 0.01	
c : 0.17	4 : 0.11	3 : 0.09	= : 0.09	g : 0.09	b : 0.07	e : 0.07	d : 0.07	] : 0.05	i : 0.03	f : 0.03	2 : 0.03	
c : 0.19	g : 0.15	e : 0.11	= : 0.09	i : 0.07	] : 0.07	b : 0.05	d : 0.05	4 : 0.03	f : 0.03	: : 0.01	2 : 0.01	a : 0.01	h : 0.01	
g : 0.19	c : 0.13	e : 0.11	= : 0.09	] : 0.09	i : 0.07	d : 0.07	f : 0.05	2 : 0.03	a : 0.03	F : 0.01	4 : 0.01	h : 0.01	
g : 0.17	d : 0.11	e : 0.09	i : 0.07	= : 0.07	c : 0.07	] : 0.07	f : 0.05	2 : 0.05	b : 0.05	4 : 0.03	F : 0.01	: : 0.01	3 : 0.01	h : 0.01	
g : 0.17	e : 0.13	c : 0.11	d : 0.11	i : 0.07	= : 0.07	b : 0.07	f : 0.05	] : 0.03	F : 0.01	2 : 0.01	6 : 0.01	4 : 0.01	3 : 0.01	h : 0.01	

#score	745.0731320691672
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_UTR_m3_run1.txt

#BEAR
[dddd!!cccmmmmcccddddeee	chr13:113539898-113540144(+)$1	246	158	182	10.9622
gggggg[cccmmmmccc]gggggg	chr18:55282803-55283034(-)$1	231	14	38	11.3311
####bb[cccmmmmccc]bb4444	chr7:100075681-100075950(-)$1	269	127	151	10.9686
ddd"""ddddmmmmdddd4444dd	chr4:174253123-174253329(-)$1	206	155	179	12.1028
ddd[ccccccmmmmccc]ccc]dd	chr22:24313601-24313849(-)$1	248	151	175	11.0571
[ccc!!ddddmmmmdddd]ccc]a	chrX:154005157-154005410(+)$1	253	122	146	11.4454
c[eeeeecccmmmmccc]eeeeec	chr22:24313477-24313756(-)$1	279	94	118	10.0028
cccc!!ddddmmmmdddd22ccc:	chr4:1019912-1020188(+)$1	276	25	49	10.9466
ccc[bb[cccmmmmccc333bb]c	chr20:57474796-57475104(+)$1	308	173	197	12.5079
dddd!!ddddmmmmdddd22dddd	chr21:46915604-46915808(+)$1	204	93	117	11.2054
cbb####cccmmmmccc333bb]c	chr14:102551021-102551256(-)$1	235	161	185	13.7277
cc$$$$$cccooooooccc333cc	chr4:1019358-1019656(+)$1	298	236	260	9.3927
[ccc!!ddddmmmmddddccc22c	chr21:46915453-46915686(+)$1	233	4	28	10.9456
ggggg[ddddmmmmddddgggggg	chr12:76449778-76450000(-)$1	222	143	167	10.1009
edddd[ddddmmmmdddd]dddd>	chr3:9860631-9860891(+)$1	260	78	102	9.5864
dd:ccc[cccmmmmccc]cccFFF	chr9:139734997-139735245(+)$1	248	220	244	9.2970
bb$$$$$cccmmmmccc333bb]b	chr15:75952788-75953066(+)$1	278	221	245	12.5367
a%%%%%%cccmmmmccc4444a]h	chr7:106840558-106840814(+)$1	256	170	194	10.0042
dddd!!ddddmmmmdddd4444dd	chr22:38169768-38170046(+)$1	278	188	212	11.5956
"""gggggggmmmmgggggggfff	chr4:1018978-1019235(+)$1	257	15	39	9.0120
cbb####cccmmmmccc333bb]c	chr14:102551017-102551221(-)$1	204	126	150	13.7277
:eeeee[cccmmmmccc333eeee	chr4:174253129-174253345(-)$1	216	2	26	10.9710
cc####ddddmmmmdddd22ccc]	chr22:50297103-50297357(-)$1	254	121	145	12.0519
e####ccc[ammmma]ccc333ee	chr22:41575825-41576079(+)$1	254	173	197	10.8089
!ccc"""ddddlllddddccc22b	chr17:38296550-38296825(+)$1	275	148	172	9.1018
[adddd[cccmmmmccc]dddd77	chr13:113539812-113540095(+)$1	283	64	88	9.6344
dddd"""cccmmmmccc]dddd]b	chr17:38296625-38296884(+)$1	259	92	116	12.1109
ffff"""cccmmmmccc333ffff	chr21:46915824-46916098(+)$1	274	32	56	13.7577
ggggg!!ccclllccc22gggggg	chr16:67209980-67210215(-)$1	235	55	79	9.0592
:dddd!!ccclllccc4444dddd	chr22:50297245-50297529(-)$1	284	127	151	9.0128
ccc[bb[cccmmmmccc]bb]ccc	chr20:44512587-44512876(+)$1	289	254	278	10.8507
ffff"""cccmmmmccc333ffff	chr21:46915814-46916024(+)$1	210	42	66	13.7577
a[bb[a[ccclllcccabb]a]ff	chr17:38246781-38247076(+)$1	295	49	73	8.3892
e[dddd[cccmmmmccc22dddde	chr1:150192892-150193157(-)$1	265	232	256	10.8739
dddd!!ddddmmmmdddd22dddd	chr21:46915676-46915880(+)$1	204	21	45	11.2054
ffff"""cccmmmmccc333ffff	chr21:46915730-46915954(+)$1	224	126	150	13.7577
ffff"""ccclllccc333fffff	chr12:113826725-113826978(+)$1	253	78	102	10.5265
bb[a!!ddddmmmmdddd22abb]	chr13:30779873-30780120(-)$1	247	98	122	10.8283
cc####ddddmmmmdddd4444cc	chr22:21242443-21242727(+)$1	284	139	163	12.3472
ffff"""cccmmmmccc333ffff	chr21:46915680-46915887(+)$1	207	176	200	13.7577
ffff"""cccmmmmccc333ffff	chr21:46915769-46915996(+)$1	227	87	111	13.7577
eee####cccmmmmccc666666e	chr3:128532365-128532649(+)$1	284	186	210	10.7519
gggg"""cccmmmmcccggggggg	chr4:1019740-1019985(+)$1	245	30	54	12.3783
!!eeeeecccmmmmccc]eeeee2	chr4:1019475-1019812(+)$1	337	272	296	9.7615
""dddd[cccmmmmccc333dddd	chrX:154005031-154005264(+)$1	233	106	130	12.2489
bb[ccc[cccmmmmcccccc]bb:	chr4:1019785-1020112(+)$1	327	78	102	9.5089
e[a"""bbbbmmmmbb]bb]a]ee	chr17:38247931-38248181(+)$1	250	51	75	8.7032
dddd!!ddddmmmmdddd22dddd	chr21:46915623-46915876(+)$1	253	74	98	11.2054
bb"""eeeeemmmmeeeee333bb	chr7:106840502-106840758(+)$1	256	167	191	8.8794
[iiiiiiiiimmmmiiiiiiiii4	chr12:113826635-113826925(+)$1	290	111	135	9.3882
ccc[bb[cccmmmmccc]bb]ccc	chr20:44512676-44512971(+)$1	295	165	189	10.8507
ddd!!cccccclllccc]ccc]dd	chr1:206635167-206635408(+)$1	241	208	232	9.3337
dddd!!ddddmmmmdddd22dddd	chr21:46915608-46915819(+)$1	211	89	113	11.2054
fffff[ddddmmmmdddd333fff	chr13:113540773-113541012(+)$1	239	133	157	10.9800
cbb####cccmmmmccc333bb]c	chr14:102551056-102551272(-)$1	216	177	201	13.7277
ffff"""cccmmmmccc333ffff	chr21:46915687-46915930(+)$1	243	169	193	13.7577
!ccc"""ddddlllddddccc22b	chr17:38296684-38296934(+)$1	250	14	38	9.1018
""ccc"""bbmmmmbb333ccc33	chr12:69051262-69051499(+)$1	237	167	191	10.6820

#otherMatches

#Seq PSSM
CUUGCUGAGGGGCCCCUGUGAGAG	chr13:113539898-113540144(+)$1	246	158	182	10.9622
UUGUUAAAGUUAGAACUCUGGCAA	chr18:55282803-55283034(-)$1	231	14	38	11.3311
CACCCCCGGUUCCCGCCAGGCCCU	chr7:100075681-100075950(-)$1	269	127	151	10.9686
UGCUAAGAAUGUGAAUUCAAGUGC	chr4:174253123-174253329(-)$1	206	155	179	12.1028
UCUUCCAGAGAGAUCUCUUGGCAG	chr22:24313601-24313849(-)$1	248	151	175	11.0571
GACCUCGGUGAUGUUACCUGGUGU	chrX:154005157-154005410(+)$1	253	122	146	11.4454
GAGAUAACCAGCUUUGGAUUAUCC	chr22:24313477-24313756(-)$1	279	94	118	10.0028
CCUGGACACACACAUGUGCACAGA	chr4:1019912-1020188(+)$1	276	25	49	10.9466
AACUGACACAUGUUUGUUCAUCUG	chr20:57474796-57475104(+)$1	308	173	197	12.5079
uauacacauguauucaugcauaua	chr21:46915604-46915808(+)$1	204	93	117	11.2054
GACGAUAUUACUAAUGAGGAGUAC	chr14:102551021-102551256(-)$1	235	161	185	13.7277
AUGCUGCCUGGACACACAGAUAAU	chr4:1019358-1019656(+)$1	298	236	260	9.3927
CUGCCAUGUGGCCACACAGCACUG	chr21:46915453-46915686(+)$1	233	4	28	10.9456
UUAACUGUUUUUAAGAAUGUUGAC	chr12:76449778-76450000(-)$1	222	143	167	10.1009
uucauccacacaucUGUGUAUGAU	chr3:9860631-9860891(+)$1	260	78	102	9.5864
ACCCUGGCCCUCUCGGGGCAGAGC	chr9:139734997-139735245(+)$1	248	220	244	9.2970
UGCACAUGGUCAUAGCCUCACACA	chr15:75952788-75953066(+)$1	278	221	245	12.5367
AGGAAAAGAACCAAUUCAGUAUGU	chr7:106840558-106840814(+)$1	256	170	194	10.0042
acauacgcacacacgugcacacau	chr22:38169768-38170046(+)$1	278	188	212	11.5956
CUUACUGGGCCCAGGCCCAGUUGC	chr4:1018978-1019235(+)$1	257	15	39	9.0120
GACGAUAUUACUAAUGAGGAGUAC	chr14:102551017-102551221(-)$1	204	126	150	13.7277
AGGGCCCUGGCAGGCCAACAGGCU	chr4:174253129-174253345(-)$1	216	2	26	10.9710
CCAGCUCAGGGCUUCCUGCGGGUG	chr22:50297103-50297357(-)$1	254	121	145	12.0519
AAAUAUGAACUUUGGAUCACUGUA	chr22:41575825-41576079(+)$1	254	173	197	10.8089
GCCGCACGCGUAGCACGCCGGGAC	chr17:38296550-38296825(+)$1	275	148	172	9.1018
ccagacauguaaacacacgucucc	chr13:113539812-113540095(+)$1	283	64	88	9.6344
GGGACUAGCUAUCCAGCCUCCCAG	chr17:38296625-38296884(+)$1	259	92	116	12.1109
UAUACUcaugcacacauacauaua	chr21:46915824-46916098(+)$1	274	32	56	13.7577
AUGUAUUUAUUCCAUAUUUAUAUG	chr16:67209980-67210215(-)$1	235	55	79	9.0592
AUGACAAUUCAGAGAAGCAAGUCA	chr22:50297245-50297529(-)$1	284	127	151	9.0128
GGUUGAAGGGUCUUCUCAUCUACC	chr20:44512587-44512876(+)$1	289	254	278	10.8507
UAUACUcaugcacacauacauaua	chr21:46915814-46916024(+)$1	210	42	66	13.7577
UGUGCGUGAGCGUCUCCCAGAACC	chr17:38246781-38247076(+)$1	295	49	73	8.3892
CAUGUACGAUAGCUAUCCCUACAG	chr1:150192892-150193157(-)$1	265	232	256	10.8739
uauacacauguauucaugcauaua	chr21:46915676-46915880(+)$1	204	21	45	11.2054
UAUACUcaugcacacauacauaua	chr21:46915730-46915954(+)$1	224	126	150	13.7577
AAGGAGCCUGUUCCAGCACCCUUC	chr12:113826725-113826978(+)$1	253	78	102	10.5265
CUAGGAUUACAGGCGUGAGacaga	chr13:30779873-30780120(-)$1	247	98	122	10.8283
GUUUAGGAGUCAUCAUUcacacac	chr22:21242443-21242727(+)$1	284	139	163	12.3472
UAUACUcaugcacacauacauaua	chr21:46915680-46915887(+)$1	207	176	200	13.7577
UAUACUcaugcacacauacauaua	chr21:46915769-46915996(+)$1	227	87	111	13.7577
GGACAAGCCAGCGGUGGAAGUCAU	chr3:128532365-128532649(+)$1	284	186	210	10.7519
gacacacgcagauaugcugucuag	chr4:1019740-1019985(+)$1	245	30	54	12.3783
cacaggcgcagauaugcugccugg	chr4:1019475-1019812(+)$1	337	272	296	9.7615
AGUAGUGAAGGCCACUUGAAGCUG	chrX:154005031-154005264(+)$1	233	106	130	12.2489
cacgcacgcagauaugcugccugg	chr4:1019785-1020112(+)$1	327	78	102	9.5089
CUCCCUUCCCCCUCGGUGAUGUGG	chr17:38247931-38248181(+)$1	250	51	75	8.7032
uauacacauguauucaugcauaua	chr21:46915623-46915876(+)$1	253	74	98	11.2054
CAUUAGAAGCAAAGGCUUUGGCUG	chr7:106840502-106840758(+)$1	256	167	191	8.8794
UCCUUCCUGAGGGUUUGGGAAGGU	chr12:113826635-113826925(+)$1	290	111	135	9.3882
GGUUGAAGGGUCUUCUCAUCUACC	chr20:44512676-44512971(+)$1	295	165	189	10.8507
CCAUUACAAACUUUGUUCUGUCUG	chr1:206635167-206635408(+)$1	241	208	232	9.3337
uauacacauguauucaugcauaua	chr21:46915608-46915819(+)$1	211	89	113	11.2054
UGUCUAUAAGCAGCCUUGAUGGGA	chr13:113540773-113541012(+)$1	239	133	157	10.9800
GACGAUAUUACUAAUGAGGAGUAC	chr14:102551056-102551272(-)$1	216	177	201	13.7277
UAUACUcaugcacacauacauaua	chr21:46915687-46915930(+)$1	243	169	193	13.7577
GCCGCACGCGUAGCACGCCGGGAC	chr17:38296684-38296934(+)$1	250	14	38	9.1018
cccaccucggccucccaaagugcu	chr12:69051262-69051499(+)$1	237	167	191	10.6820

#DB
.((((..(((....))))))))))	chr13:113539898-113540144(+)$1	1	158	182	10.9622
((((((.(((....))).))))))	chr18:55282803-55283034(-)$1	1	14	38	11.3311
....((.(((....))).))....	chr7:100075681-100075950(-)$1	1	127	151	10.9686
(((...((((....))))....))	chr4:174253123-174253329(-)$1	1	155	179	12.1028
(((.((((((....))).))).))	chr22:24313601-24313849(-)$1	1	151	175	11.0571
.(((..((((....)))).))).)	chrX:154005157-154005410(+)$1	1	122	146	11.4454
(.((((((((....))).))))))	chr22:24313477-24313756(-)$1	1	94	118	10.0028
)(((..((((....))))..))).	chr4:1019912-1020188(+)$1	1	25	49	10.9466
(((.((.(((....)))...)).)	chr20:57474796-57475104(+)$1	1	173	197	12.5079
((((..((((....))))..))))	chr21:46915604-46915808(+)$1	1	93	117	11.2054
(((....(((....)))...)).)	chr14:102551021-102551256(-)$1	1	161	185	13.7277
((.....(((......)))...))	chr4:1019358-1019656(+)$1	1	236	260	9.3927
.(((..((((....)))))))..)	chr21:46915453-46915686(+)$1	1	4	28	10.9456
(((((.((((....))))))))))	chr12:76449778-76450000(-)$1	1	143	167	10.1009
(((((.((((....)))).)))).	chr3:9860631-9860891(+)$1	1	78	102	9.5864
)).(((.(((....))).))))))	chr9:139734997-139735245(+)$1	1	220	244	9.2970
((.....(((....)))...)).)	chr15:75952788-75953066(+)$1	1	221	245	12.5367
(......(((....)))....).)	chr7:106840558-106840814(+)$1	1	170	194	10.0042
((((..((((....))))....))	chr22:38169768-38170046(+)$1	1	188	212	11.5956
...(((((((....))))))))))	chr4:1018978-1019235(+)$1	1	15	39	9.0120
(((....(((....)))...)).)	chr14:102551017-102551221(-)$1	1	126	150	13.7277
.(((((.(((....)))...))))	chr4:174253129-174253345(-)$1	1	2	26	10.9710
((....((((....))))..))).	chr22:50297103-50297357(-)$1	1	121	145	12.0519
(....(((.(....).)))...))	chr22:41575825-41576079(+)$1	1	173	197	10.8089
.(((...((((...)))))))..)	chr17:38296550-38296825(+)$1	1	148	172	9.1018
.(((((.(((....))).))))..	chr13:113539812-113540095(+)$1	1	64	88	9.6344
((((...(((....))).)))).)	chr17:38296625-38296884(+)$1	1	92	116	12.1109
((((...(((....)))...))))	chr21:46915824-46916098(+)$1	1	32	56	13.7577
(((((..(((...)))..))))))	chr16:67209980-67210215(-)$1	1	55	79	9.0592
.((((..(((...)))....))))	chr22:50297245-50297529(-)$1	1	127	151	9.0128
(((.((.(((....))).)).)))	chr20:44512587-44512876(+)$1	1	254	278	10.8507
((((...(((....)))...))))	chr21:46915814-46916024(+)$1	1	42	66	13.7577
(.((.(.(((...)))))).).))	chr17:38246781-38247076(+)$1	1	49	73	8.3892
(.((((.(((....)))..)))))	chr1:150192892-150193157(-)$1	1	232	256	10.8739
((((..((((....))))..))))	chr21:46915676-46915880(+)$1	1	21	45	11.2054
((((...(((....)))...))))	chr21:46915730-46915954(+)$1	1	126	150	13.7577
((((...(((...)))...)))))	chr12:113826725-113826978(+)$1	1	78	102	10.5265
((.(..((((....))))..))).	chr13:30779873-30780120(-)$1	1	98	122	10.8283
((....((((....))))....))	chr22:21242443-21242727(+)$1	1	139	163	12.3472
((((...(((....)))...))))	chr21:46915680-46915887(+)$1	1	176	200	13.7577
((((...(((....)))...))))	chr21:46915769-46915996(+)$1	1	87	111	13.7577
(((....(((....)))......)	chr3:128532365-128532649(+)$1	1	186	210	10.7519
((((...(((....))))))))))	chr4:1019740-1019985(+)$1	1	30	54	12.3783
..((((((((....))).))))).	chr4:1019475-1019812(+)$1	1	272	296	9.7615
..((((.(((....)))...))))	chrX:154005031-154005264(+)$1	1	106	130	12.2489
((.(((.(((....)))))).)).	chr4:1019785-1020112(+)$1	1	78	102	9.5089
(.(...((((....)).)).).))	chr17:38247931-38248181(+)$1	1	51	75	8.7032
((((..((((....))))..))))	chr21:46915623-46915876(+)$1	1	74	98	11.2054
((...(((((....)))))...))	chr7:106840502-106840758(+)$1	1	167	191	8.8794
.(((((((((....))))))))).	chr12:113826635-113826925(+)$1	1	111	135	9.3882
(((.((.(((....))).)).)))	chr20:44512676-44512971(+)$1	1	165	189	10.8507
(((..((((((...))).))).))	chr1:206635167-206635408(+)$1	1	208	232	9.3337
((((..((((....))))..))))	chr21:46915608-46915819(+)$1	1	89	113	11.2054
(((((.((((....))))...)))	chr13:113540773-113541012(+)$1	1	133	157	10.9800
(((....(((....)))...)).)	chr14:102551056-102551272(-)$1	1	177	201	13.7277
((((...(((....)))...))))	chr21:46915687-46915930(+)$1	1	169	193	13.7577
.(((...((((...)))))))..)	chr17:38296684-38296934(+)$1	1	14	38	9.1018
..(((...((....))...)))..	chr12:69051262-69051499(+)$1	1	167	191	10.6820

#PSSM
c : 0.18	d : 0.17	f : 0.13	[ : 0.08	e : 0.08	g : 0.06	b : 0.06	" : 0.05	! : 0.05	a : 0.03	: : 0.03	# : 0.01	
d : 0.22	c : 0.18	f : 0.13	b : 0.12	g : 0.06	[ : 0.06	" : 0.05	# : 0.03	e : 0.03	% : 0.01	a : 0.01	! : 0.01	i : 0.01	
d : 0.25	c : 0.15	f : 0.13	g : 0.06	# : 0.06	e : 0.06	b : 0.06	$ : 0.03	" : 0.03	[ : 0.03	: : 0.01	% : 0.01	a : 0.01	i : 0.01	
d : 0.20	# : 0.13	c : 0.13	f : 0.13	g : 0.08	[ : 0.06	" : 0.05	e : 0.05	$ : 0.03	% : 0.01	b : 0.01	a : 0.01	i : 0.01	! : 0.01	
" : 0.24	! : 0.17	# : 0.12	d : 0.10	g : 0.06	b : 0.06	c : 0.06	e : 0.05	$ : 0.03	% : 0.01	[ : 0.01	i : 0.01	f : 0.01	
" : 0.24	! : 0.20	# : 0.10	c : 0.08	b : 0.06	e : 0.06	[ : 0.05	d : 0.05	g : 0.03	$ : 0.03	% : 0.01	a : 0.01	i : 0.01	
d : 0.25	[ : 0.20	" : 0.20	# : 0.06	! : 0.05	c : 0.05	e : 0.05	$ : 0.03	% : 0.01	g : 0.01	b : 0.01	i : 0.01	
c : 0.62	d : 0.29	g : 0.01	b : 0.01	e : 0.01	i : 0.01	" : 0.01	
c : 0.60	d : 0.29	b : 0.03	g : 0.01	[ : 0.01	e : 0.01	i : 0.01	
c : 0.60	d : 0.29	b : 0.03	g : 0.01	a : 0.01	e : 0.01	i : 0.01	
m : 0.86	l : 0.06	d : 0.03	o : 0.01	c : 0.01	
m : 0.86	l : 0.12	o : 0.01	
m : 0.86	l : 0.12	o : 0.01	
m : 0.86	c : 0.06	l : 0.05	o : 0.01	
c : 0.58	d : 0.29	b : 0.03	o : 0.01	g : 0.01	a : 0.01	e : 0.01	i : 0.01	
c : 0.58	d : 0.29	b : 0.03	o : 0.01	g : 0.01	] : 0.01	e : 0.01	i : 0.01	
c : 0.55	d : 0.29	3 : 0.03	g : 0.01	2 : 0.01	4 : 0.01	a : 0.01	] : 0.01	e : 0.01	i : 0.01	
d : 0.31	3 : 0.25	] : 0.18	c : 0.05	4 : 0.03	g : 0.03	2 : 0.03	b : 0.03	6 : 0.01	e : 0.01	i : 0.01	
3 : 0.27	c : 0.15	2 : 0.13	g : 0.08	b : 0.08	4 : 0.08	d : 0.05	e : 0.05	] : 0.03	6 : 0.01	i : 0.01	
3 : 0.29	c : 0.15	2 : 0.12	d : 0.08	g : 0.08	4 : 0.08	b : 0.05	e : 0.03	] : 0.03	f : 0.01	6 : 0.01	i : 0.01	
d : 0.18	c : 0.17	f : 0.12	g : 0.08	4 : 0.08	b : 0.08	3 : 0.06	e : 0.05	] : 0.05	a : 0.05	6 : 0.01	i : 0.01	
d : 0.17	f : 0.15	b : 0.12	c : 0.10	e : 0.06	g : 0.06	4 : 0.06	] : 0.06	3 : 0.05	2 : 0.05	F : 0.01	a : 0.01	6 : 0.01	i : 0.01	
d : 0.20	f : 0.17	] : 0.13	e : 0.10	c : 0.10	g : 0.06	2 : 0.05	b : 0.05	4 : 0.01	F : 0.01	7 : 0.01	6 : 0.01	i : 0.01	3 : 0.01	
d : 0.17	c : 0.17	f : 0.17	e : 0.10	b : 0.08	g : 0.06	4 : 0.03	: : 0.03	] : 0.03	a : 0.01	> : 0.01	F : 0.01	h : 0.01	7 : 0.01	2 : 0.01	3 : 0.01	

#score	641.4842741957104
#seq	58
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_transcript_m1_run1.txt

#BEAR
==========gggggggnnnnnggggggg333=======	chr17:75412473-75412758(+)$1	285	176	215	14.9094
ffccc[ccc####ddddnnnnndddd4444cccccc:::	chr2:71559441-71559757(+)$1	316	157	196	12.5148
'ffffffeeeee!!cccnnnnnccceeeee4444fffff	chr12:26927829-26928119(-)$1	290	31	70	12.6144
ccc"""ccc!!ccc[bbnnnnnbb]ccc22ccc333ccc	chr21:47559920-47560175(-)$1	255	136	175	14.4189
!!a[eeeeedddd[cccnnnnnccc]dddd22eeeee]a	chr11:65194763-65194973(+)$1	210	41	80	12.9484
dddd!!dddd[dddd[annnnna]dddddddddddd333	chr18:678994-679296(-)$1	302	255	294	12.5956
i[bb[ffffff!!ddddoooooodddd22ffffff]bb2	chr11:65192258-65192525(+)$1	267	43	82	12.4799
========dddd####bbmmmmbb4444dddd333====	chr11:70496629-70496925(-)$1	296	94	133	12.0675
c!!==========[cccooooooccc==========22c	chr21:47560535-47560787(-)$1	252	203	242	16.6592
!bb"""dddd"""ddddmmmmdddd4444ddddbb22ff	chr14:89761312-89761630(-)$1	318	47	86	11.4271
=$$$$$bb[ccc!!cccmmmmccc22ccc]bb=======	chr1:43406492-43406749(-)$1	257	95	134	11.2918
c"""ggggggg[eeeeennnnneeeeeggggggg333cc	chr19:34874131-34874379(+)$1	248	108	147	13.5104
""cccccc[dddd[cccnnnnncccdddd]ccc]ccc44	chr9:104167313-104167593(+)$1	280	119	158	14.9424
]a]a==========="""bblllbb333===========	chr6:52249087-52249396(+)$1	309	117	156	11.7917
fff!!dddd"""ddddooooooddddddddffffffbbe	chr17:80849526-80849782(+)$1	256	5	44	12.3754
eeee[ccc[dddd[cccooooooccc22dddd]ccc333	chr17:64325364-64325643(+)$1	279	155	194	14.5013
ffffff"""ccc!!cccnnnnnccc4444ccc666666f	chr8:123882259-123882520(+)$1	261	175	214	13.2882
c[ffffff[bb"""cccooooooccc4444bb333ffff	chr17:64339507-64339826(+)$1	319	160	199	14.9999
d"""ffffff####cccooooooccc4444ffffffddd	chr2:63121526-63121789(+)$1	263	139	178	15.3166
cc[eeeee!!gggggggooooooggggggg4444eeeee	chr21:16370826-16371077(-)$1	251	161	200	11.8174
cc"""a[bb[eeeeecccmmmmccc333eeeee]bb]a4	chr7:139469112-139469384(-)$1	272	227	266	11.6936
fff!!a[a!!ddddoooooodddd]a]a22ffffff333	chr7:100142270-100142515(+)$1	245	54	93	11.3384
""bb[dddd[ccc[ddddllldddd]cccdddd]bb333	chr1:212926376-212926650(-)$1	274	135	174	11.8373
==========="""cccpppppppccc============	chr11:65194086-65194315(+)$1	229	139	178	12.4626
ggggggffffff!!cccooooooccc]ffffff]ggggg	chr8:48861546-48861810(-)$1	264	33	72	13.5641
a####dddddddd[ddddllldddddddd]dddd4444a	chr3:133496207-133496426(+)$1	219	107	146	11.4131
bb[ccc[ccc"""a[bbnnnnnbb]a4444ccc]ccc]b	chr1:43398801-43399065(-)$1	264	89	128	14.9297
ddddddddeeeee[cccnnnnnccc]eeeee]dddd]dd	chr15:99264641-99264922(+)$1	281	185	224	11.8188
cc!!=============nnnnn=============]ccc	chr2:27574547-27574840(-)$1	293	217	256	16.0797
ddd!!dddd[bb!!cccnnnnncccbb]dddd22ddddg	chr4:74099157-74099436(-)$1	279	133	172	13.1479
eee!!ffffffeeeeeooooooeeeee333ffffff22e	chr6:2272913-2273184(+)$1	271	57	96	12.2609
c[bb[a"""dddd[bboooooobb]dddd22a]bb]ccc	chr1:8070494-8070767(-)$1	273	120	159	11.6243
:bb"""gggggggbb[ccclllcccbb]ggggggg333b	chr19:34877904-34878163(+)$1	259	190	229	11.0997
b[bb[eeeee[bb[cccnnnnnccc]bb]eeeee]bbbb	chr17:75481416-75481717(+)$1	301	28	67	12.3167
cc:==========ddddnnnnndddd]==========::	chr14:36140139-36140477(-)$1	338	221	260	12.7471
ccc[dddd[bb!!ddddooooooddddbb]dddd]cccf	chr2:207022005-207022290(-)$1	285	98	137	12.0756
dddd!!dddd####cccnnnnnccc4444dddd]dddd:	chr20:35484317-35484574(-)$1	257	28	67	14.6108
==========="""cccpppppppccc============	chr11:65194056-65194268(+)$1	212	169	208	12.4626
ddd!!ffffff!!cccooooooccc55555ffffff333	chr6:129916601-129916841(-)$1	240	138	177	12.3062
fffff[ccc$$$$$cccnnnnnccc4444ccc]ffffff	chr2:236547724-236547990(+)$1	266	60	99	15.0229
e[==========[fffffflllffffff]==========	chr20:43053332-43053660(+)$1	328	243	282	11.9381
$iiiiiiiii####cccooooooccc22iiiiiiiii55	chr7:138159811-138160099(+)$1	288	171	210	14.7533
fff[bb!!bb"""cccoooooocccbb22bb]ffffff]	chr9:139698080-139698389(+)$1	309	55	94	12.6036
fffa[dddd[gggggggnnnnnggggggg]dddd]accc	chr6:2270331-2270585(+)$1	254	115	154	12.8948
ccc!!a[dddd"""bboooooobb333dddd]accc22c	chr20:30255841-30256107(-)$1	266	96	135	14.4834
bbccc[ccc$$$$$bboooooobb22ccc]ccc]bb333	chr4:3527801-3528081(-)$1	280	196	235	13.1745
!bb[dddd####a[cccnnnnnccc]a4444dddd]bbb	chr21:16401275-16401532(-)$1	257	19	58	14.9415
bb[a[ccc!!ccc!!bbnnnnnbb333ccc22ccc]a]b	chr4:140588543-140588866(+)$1	323	138	177	13.7099
[bb!!ffffff[cccrrrrrrrrrccc333ffffff444	chr5:95274722-95274991(-)$1	269	20	59	12.4456
ccc!!ggggggg!!cccnnnnnccc4444ggggggg444	chr11:68084396-68084677(+)$1	281	111	150	17.6906
ggggffffff[bb!!aooooooa22bb22ffffff4444	chr11:124804754-124805056(-)$1	302	128	167	12.3271
cccdddddddd"""ccclllccc]dddd]dddd22cccd	chr13:98892605-98892890(+)$1	285	154	193	11.2440
ee[bb!!bb"""eeeeennnnneeeee333bb22bb]ee	chr19:34878757-34879035(+)$1	278	82	121	11.7097

#otherMatches

#Seq PSSM
GAGGAUGCGGUGGGAGGAAGACCUUCCCAGUCCUGCAUC	chr17:75412473-75412758(+)$1	285	176	215	14.9094
CUGGUGUUCUGUGCUGCGUAGUGCAGGUAUGAAACCAAA	chr2:71559441-71559757(+)$1	316	157	196	12.5148
AUAAGuugggguaccuguggaucagacccuggaagacuu	chr12:26927829-26928119(-)$1	290	31	70	12.6144
GCAAAGGUCGACUUUUGAAAAACAUAAGGAGAUAUCUGU	chr21:47559920-47560175(-)$1	255	136	175	14.4189
CCUGGGCCUGUUUGCCUGAGAAGGGGAGAUAAGGGCUGA	chr11:65194763-65194973(+)$1	210	41	80	12.9484
GUGCUGUCCACGUUGGGAGGAGCGCAGCUGGAGCAUGGG	chr18:678994-679296(-)$1	302	255	294	12.5956
UACUUUCUUGGCAUUCUAGUAAGAGGACCCUGAGGUGGG	chr11:65192258-65192525(+)$1	267	43	82	12.4799
GUUUUUGCAGGCAGAACUGAGGAGGAAGGUCUUGAGCAA	chr11:70496629-70496925(-)$1	296	94	133	12.0675
UGGACGGGGAGUGCUGGGUGGGUUUACACUCCCUGUGAG	chr21:47560535-47560787(-)$1	252	203	242	16.6592
gauucgaguugaacauuaaaggaugaauaggcuguaaca	chr14:89761312-89761630(-)$1	318	47	86	11.4271
UGGGUGAUGUGUGGUUUGAAGAAGGAGCAGGUGUGCCAG	chr1:43406492-43406749(-)$1	257	95	134	11.2918
GAGGUGGUUCUGUCAGGUGAAGUCUGAGGAGCCAAAGCU	chr19:34874131-34874379(+)$1	248	108	147	13.5104
AAGAGUUGUAUCAUAGCAAAGAGCUUGAUUCGAUCUUAA	chr9:104167313-104167593(+)$1	280	119	158	14.9424
GAGGAGUGCUGGUUAGGGCAGAGUGAAAUGGCUAGCACU	chr6:52249087-52249396(+)$1	309	117	156	11.7917
UCUAAUACACAGAUUUGGAAUGAAGUUGUAAGAAAUGCG	chr17:80849526-80849782(+)$1	256	5	44	12.3754
auuuaggugcuggagcugagagaggcagccaggacugga	chr17:64325364-64325643(+)$1	279	155	194	14.5013
UUGAGAUGGGCAAGGUCAAUGAGGCAGACUGCAGAGGCU	chr8:123882259-123882520(+)$1	261	175	214	13.2882
cggauuggagggagacuggagugagugagacuauaccag	chr17:64339507-64339826(+)$1	319	160	199	14.9999
caggugggcaaaugcauugaaguaugaaagugcccaguu	chr2:63121526-63121789(+)$1	263	139	178	15.3166
guggacccacacggugcaagccagcguuguucaaggguc	chr21:16370826-16371077(-)$1	251	161	200	11.8174
CCAGGGGUGGGCCAUGCUGGUAGGCCUUGUGGUGCGGUG	chr7:139469112-139469384(-)$1	272	227	266	11.6936
ACUAAAGGGAUGAGAAAAAGCUCGACGUGGGGUGGUGGG	chr7:100142270-100142515(+)$1	245	54	93	11.3384
AGGUGUGCUGCAGAGGAUUUCAUCUACUGAGCAAAUGGG	chr1:212926376-212926650(-)$1	274	135	174	11.8373
CAUUGGUUUGAAAUGUGAUGAAACCACUCAAGCCAAUGA	chr11:65194086-65194315(+)$1	229	139	178	12.4626
auccuggaucauccccaugggcuuggugugaucacaggg	chr8:48861546-48861810(-)$1	264	33	72	13.5641
AGAAUUCCAUCUUAUUUCUAAGAAAAGGACUGGGUUUAU	chr3:133496207-133496426(+)$1	219	107	146	11.4131
GUGAGUGCAAAGGUGUGGUAGGUAGGGAGAUUGGAUUGA	chr1:43398801-43399065(-)$1	264	89	128	14.9297
AGGUCUUCUCUCAGGGUAGUGCaccaugagagggagcac	chr15:99264641-99264922(+)$1	281	185	224	11.8188
gaaagugagaaauuucauugucuggaauuuuuugcaucc	chr2:27574547-27574840(-)$1	293	217	256	16.0797
GGCAAUCUUGGGCCUUCAAAAAGAACUGAAGAAAGCUAG	chr4:74099157-74099436(-)$1	279	133	172	13.1479
cgucuaaacucuccugaagucccgggaauggaguuuuaa	chr6:2272913-2273184(+)$1	271	57	96	12.2609
AGGUAGGCAUGUUACCAGUGGAGGAAGCAGACAAUGUGU	chr1:8070494-8070767(-)$1	273	120	159	11.6243
GGUAUAUAACUCUGUAGCCUGAGGCACUGGAGUUGGACA	chr19:34877904-34878163(+)$1	259	190	229	11.0997
gaugguaguggugaugugguugaugauggugcuggugcu	chr17:75481416-75481717(+)$1	301	28	67	12.3167
cccugaauauauauugucuuuaacaauuauauauuuaaa	chr14:36140139-36140477(-)$1	338	221	260	12.7471
AUAAGACUGUUUGGUGGUUAUUUUCAUAAGGGUCCUGUG	chr2:207022005-207022290(-)$1	285	98	137	12.0756
CCACAGGCUUGAAACGGAAAAGCUGGAGGGAGUGGUGGG	chr20:35484317-35484574(-)$1	257	28	67	14.6108
CAUUGGUUUGAAAUGUGAUGAAACCACUCAAGCCAAUGA	chr11:65194056-65194268(+)$1	212	169	208	12.4626
guugaugggaguauauaaauugguagaguucuuccagag	chr6:129916601-129916841(-)$1	240	138	177	12.3062
guggggcauggggaauuggacggaugauaguggcccaca	chr2:236547724-236547990(+)$1	266	60	99	15.0229
gauuuuauucucauugcaacuauuguaaggagagugaaa	chr20:43053332-43053660(+)$1	328	243	282	11.9381
GAUAGUAUCUAACaaagagaggacuuaaggauauuauau	chr7:138159811-138160099(+)$1	288	171	210	14.7533
ugagcugggcugagggauugaacccgcaaaggucaggug	chr9:139698080-139698389(+)$1	309	55	94	12.6036
gcaggucagaguccaggagaggccugggcccugggccac	chr6:2270331-2270585(+)$1	254	115	154	12.8948
gucaugguugugaaaugagggagugaggcaggcgacgac	chr20:30255841-30256107(-)$1	266	96	135	14.4834
AGGACUCCACAGAGGCUUUAAUGCGCUGGCGUCACUACA	chr4:3527801-3528081(-)$1	280	196	235	13.1745
guuguguuaaguagaccaaagaggugucaaaaacagaag	chr21:16401275-16401532(-)$1	257	19	58	14.9415
GUGAAUGAUGAUUAAUGGUGGACAGGGAAUGUUUAAUGA	chr4:140588543-140588866(+)$1	323	138	177	13.7099
AGAACCCUCCACUCAGAACUUCUAUGGAAAUGGGGGACU	chr5:95274722-95274991(-)$1	269	20	59	12.4456
AGCAGCAGGGUGUGGGCUCUGUGCCAGGCCGCCCUGGAG	chr11:68084396-68084677(+)$1	281	111	150	17.6906
GUUAGGGUUGGGAAAUGAGCAAAGGUCAACAGCUUGAAA	chr11:124804754-124805056(-)$1	302	128	167	12.3271
GCAUUCUAUGACAAGUUGACAGCAUUAUGAGAAACUGUA	chr13:98892605-98892890(+)$1	285	154	193	11.2440
GAGUAGUGUGGGCUCUUAUAUCAAGGGAAAGCCGUAGUC	chr19:34878757-34879035(+)$1	278	82	121	11.7097

#DB
(((((((((((((((((.....)))))))...)))))))	chr17:75412473-75412758(+)$1	1	176	215	14.9094
))(((.(((....((((.....))))....))))))...	chr2:71559441-71559757(+)$1	1	157	196	12.5148
.(((((((((((..(((.....))))))))....)))))	chr12:26927829-26928119(-)$1	1	31	70	12.6144
(((...(((..(((.((.....)).)))..)))...)))	chr21:47559920-47560175(-)$1	1	136	175	14.4189
..(.(((((((((.(((.....))).))))..))))).)	chr11:65194763-65194973(+)$1	1	41	80	12.9484
((((..((((.((((.(.....).))))))))))))...	chr18:678994-679296(-)$1	1	255	294	12.5956
(.((.((((((..((((......))))..)))))).)).	chr11:65192258-65192525(+)$1	1	43	82	12.4799
((((((((((((....((....))....))))...))))	chr11:70496629-70496925(-)$1	1	94	133	12.0675
(..((((((((((.(((......)))))))))))))..)	chr21:47560535-47560787(-)$1	1	203	242	16.6592
.((...((((...((((....))))....))))))..))	chr14:89761312-89761630(-)$1	1	47	86	11.4271
(.....((.(((..(((....)))..))).)))))))))	chr1:43406492-43406749(-)$1	1	95	134	11.2918
(...(((((((.(((((.....))))))))))))...))	chr19:34874131-34874379(+)$1	1	108	147	13.5104
..((((((.((((.(((.....))))))).))).)))..	chr9:104167313-104167593(+)$1	1	119	158	14.9424
.).)(((((((((((...((...))...)))))))))))	chr6:52249087-52249396(+)$1	1	117	156	11.7917
(((..((((...((((......))))))))))))))(((	chr17:80849526-80849782(+)$1	1	5	44	12.3754
((((.(((.((((.(((......)))..)))).)))...	chr17:64325364-64325643(+)$1	1	155	194	14.5013
((((((...(((..(((.....)))....)))......)	chr8:123882259-123882520(+)$1	1	175	214	13.2882
(.((((((.((...(((......)))....))...))))	chr17:64339507-64339826(+)$1	1	160	199	14.9999
(...((((((....(((......)))....)))))))))	chr2:63121526-63121789(+)$1	1	139	178	15.3166
((.(((((..(((((((......)))))))....)))))	chr21:16370826-16371077(-)$1	1	161	200	11.8174
((...(.((.((((((((....)))...))))).)).).	chr7:139469112-139469384(-)$1	1	227	266	11.6936
(((..(.(..((((......)))).).)..))))))...	chr7:100142270-100142515(+)$1	1	54	93	11.3384
..((.((((.(((.((((...)))).))))))).))...	chr1:212926376-212926650(-)$1	1	135	174	11.8373
(((((((((((...(((.......)))))))))))))))	chr11:65194086-65194315(+)$1	1	139	178	12.4626
((((((((((((..(((......))).)))))).)))))	chr8:48861546-48861810(-)$1	1	33	72	13.5641
(....((((((((.((((...)))))))).))))....)	chr3:133496207-133496426(+)$1	1	107	146	11.4131
((.(((.(((...(.((.....)).)....))).))).)	chr1:43398801-43399065(-)$1	1	89	128	14.9297
(((((((((((((.(((.....))).))))).)))).))	chr15:99264641-99264922(+)$1	1	185	224	11.8188
((..(((((((((((((.....))))))))))))).)))	chr2:27574547-27574840(-)$1	1	217	256	16.0797
(((..((((.((..(((.....))))).))))..))))(	chr4:74099157-74099436(-)$1	1	133	172	13.1479
(((..(((((((((((......)))))...))))))..)	chr6:2272913-2273184(+)$1	1	57	96	12.2609
(.((.(...((((.((......)).))))..).)).)))	chr1:8070494-8070767(-)$1	1	120	159	11.6243
.((...(((((((((.(((...))))).)))))))...)	chr19:34877904-34878163(+)$1	1	190	229	11.0997
(.((.(((((.((.(((.....))).)).))))).))))	chr17:75481416-75481717(+)$1	1	28	67	12.3167
)).((((((((((((((.....)))).))))))))))..	chr14:36140139-36140477(-)$1	1	221	260	12.7471
(((.((((.((..((((......)))))).)))).))))	chr2:207022005-207022290(-)$1	1	98	137	12.0756
((((..((((....(((.....)))....)))).)))).	chr20:35484317-35484574(-)$1	1	28	67	14.6108
(((((((((((...(((.......)))))))))))))))	chr11:65194056-65194268(+)$1	1	169	208	12.4626
(((..((((((..(((......))).....))))))...	chr6:129916601-129916841(-)$1	1	138	177	12.3062
(((((.(((.....(((.....)))....))).))))))	chr2:236547724-236547990(+)$1	1	60	99	15.0229
(.((((((((((.((((((...)))))).))))))))))	chr20:43053332-43053660(+)$1	1	243	282	11.9381
.(((((((((....(((......)))..)))))))))..	chr7:138159811-138160099(+)$1	1	171	210	14.7533
(((.((..((...(((......)))))..)).)))))).	chr9:139698080-139698389(+)$1	1	55	94	12.6036
)))(.((((.(((((((.....))))))).)))).)(((	chr6:2270331-2270585(+)$1	1	115	154	12.8948
(((..(.((((...((......))...)))).))))..)	chr20:30255841-30256107(-)$1	1	96	135	14.4834
(((((.(((.....((......))..))).))).))...	chr4:3527801-3528081(-)$1	1	196	235	13.1745
.((.((((....(.(((.....))).)....)))).)))	chr21:16401275-16401532(-)$1	1	19	58	14.9415
((.(.(((..(((..((.....))...)))..))).).)	chr4:140588543-140588866(+)$1	1	138	177	13.7099
.((..((((((.(((.........)))...))))))...	chr5:95274722-95274991(-)$1	1	20	59	12.4456
(((..(((((((..(((.....)))....)))))))...	chr11:68084396-68084677(+)$1	1	111	150	17.6906
((((((((((.((..(......)..))..))))))....	chr11:124804754-124805056(-)$1	1	128	167	12.3271
(((((((((((...(((...))).)))).))))..))))	chr13:98892605-98892890(+)$1	1	154	193	11.2440
((.((..((...(((((.....)))))...))..)).))	chr19:34878757-34879035(+)$1	1	82	121	11.7097

#PSSM
c : 0.24	f : 0.13	d : 0.11	= : 0.09	e : 0.07	b : 0.07	! : 0.05	" : 0.03	g : 0.03	' : 0.01	i : 0.01	] : 0.01	a : 0.01	: : 0.01	$ : 0.01	[ : 0.01	
c : 0.16	f : 0.15	b : 0.13	d : 0.09	[ : 0.09	= : 0.07	" : 0.07	e : 0.05	! : 0.03	g : 0.03	$ : 0.01	a : 0.01	# : 0.01	i : 0.01	
c : 0.15	f : 0.15	b : 0.15	= : 0.09	d : 0.09	[ : 0.07	" : 0.05	! : 0.03	e : 0.03	g : 0.03	a : 0.01	$ : 0.01	] : 0.01	# : 0.01	: : 0.01	i : 0.01	
! : 0.16	= : 0.13	" : 0.11	b : 0.09	c : 0.07	f : 0.07	[ : 0.07	d : 0.07	a : 0.05	e : 0.03	g : 0.03	$ : 0.01	# : 0.01	i : 0.01	
! : 0.18	= : 0.16	[ : 0.13	f : 0.11	c : 0.07	" : 0.07	d : 0.07	e : 0.03	g : 0.03	b : 0.03	$ : 0.01	# : 0.01	i : 0.01	
= : 0.16	f : 0.16	d : 0.16	c : 0.07	a : 0.07	[ : 0.05	" : 0.05	e : 0.05	! : 0.05	g : 0.05	$ : 0.01	i : 0.01	b : 0.01	
d : 0.22	= : 0.16	f : 0.16	c : 0.13	[ : 0.07	e : 0.05	g : 0.05	" : 0.03	! : 0.03	b : 0.01	i : 0.01	
d : 0.24	= : 0.16	c : 0.15	f : 0.15	e : 0.07	b : 0.05	g : 0.05	" : 0.03	a : 0.01	i : 0.01	! : 0.01	
d : 0.20	= : 0.15	f : 0.13	c : 0.09	[ : 0.09	e : 0.07	g : 0.05	! : 0.05	b : 0.05	" : 0.03	i : 0.01	# : 0.01	
d : 0.20	= : 0.15	f : 0.13	! : 0.07	[ : 0.07	e : 0.05	c : 0.05	g : 0.05	b : 0.05	# : 0.03	" : 0.03	$ : 0.03	i : 0.01	
d : 0.16	= : 0.13	g : 0.11	# : 0.09	f : 0.09	" : 0.09	c : 0.07	e : 0.05	[ : 0.05	b : 0.05	$ : 0.03	! : 0.01	
" : 0.18	d : 0.15	g : 0.09	# : 0.09	c : 0.09	= : 0.09	e : 0.07	! : 0.05	b : 0.05	[ : 0.03	$ : 0.03	f : 0.01	
! : 0.16	d : 0.15	" : 0.15	# : 0.09	e : 0.09	g : 0.07	c : 0.07	= : 0.07	b : 0.03	$ : 0.03	[ : 0.01	a : 0.01	
[ : 0.18	d : 0.15	! : 0.15	" : 0.09	c : 0.07	# : 0.07	e : 0.07	g : 0.05	= : 0.03	$ : 0.03	a : 0.01	b : 0.01	f : 0.01	
c : 0.45	d : 0.16	e : 0.07	b : 0.07	g : 0.05	[ : 0.03	= : 0.03	! : 0.03	# : 0.01	o : 0.01	f : 0.01	
c : 0.45	d : 0.15	b : 0.11	g : 0.05	e : 0.05	[ : 0.03	# : 0.01	" : 0.01	o : 0.01	= : 0.01	f : 0.01	r : 0.01	a : 0.01	
c : 0.43	o : 0.16	d : 0.13	b : 0.07	g : 0.05	e : 0.03	a : 0.01	" : 0.01	= : 0.01	f : 0.01	r : 0.01	
n : 0.41	o : 0.33	m : 0.03	c : 0.03	d : 0.03	p : 0.03	b : 0.01	" : 0.01	f : 0.01	r : 0.01	l : 0.01	
n : 0.41	o : 0.33	m : 0.07	l : 0.05	p : 0.03	b : 0.01	c : 0.01	f : 0.01	r : 0.01	
n : 0.41	o : 0.33	l : 0.09	m : 0.07	p : 0.03	b : 0.01	r : 0.01	
n : 0.41	o : 0.32	l : 0.09	m : 0.07	p : 0.03	d : 0.01	r : 0.01	c : 0.01	
n : 0.41	o : 0.32	d : 0.07	l : 0.05	m : 0.03	c : 0.03	p : 0.03	r : 0.01	
c : 0.32	o : 0.16	d : 0.13	b : 0.13	e : 0.05	g : 0.03	a : 0.03	p : 0.03	l : 0.01	= : 0.01	f : 0.01	r : 0.01	
c : 0.41	d : 0.16	b : 0.15	g : 0.05	e : 0.05	] : 0.03	p : 0.03	= : 0.01	f : 0.01	r : 0.01	2 : 0.01	
c : 0.45	d : 0.18	] : 0.07	g : 0.05	2 : 0.05	e : 0.05	3 : 0.03	4 : 0.01	b : 0.01	= : 0.01	f : 0.01	
d : 0.18	c : 0.18	4 : 0.11	] : 0.09	e : 0.07	3 : 0.07	b : 0.07	g : 0.05	2 : 0.03	a : 0.03	= : 0.01	5 : 0.01	f : 0.01	
4 : 0.18	d : 0.16	c : 0.13	e : 0.09	b : 0.09	3 : 0.07	g : 0.05	] : 0.05	= : 0.03	2 : 0.03	5 : 0.01	f : 0.01	a : 0.01	
4 : 0.20	d : 0.15	c : 0.09	2 : 0.09	= : 0.09	3 : 0.09	g : 0.07	e : 0.03	f : 0.03	] : 0.03	b : 0.03	a : 0.01	5 : 0.01	
4 : 0.18	d : 0.18	= : 0.11	g : 0.09	2 : 0.09	c : 0.07	e : 0.05	3 : 0.05	] : 0.05	f : 0.01	b : 0.01	5 : 0.01	i : 0.01	
d : 0.20	= : 0.13	] : 0.11	4 : 0.09	3 : 0.07	e : 0.07	g : 0.07	2 : 0.05	f : 0.05	c : 0.05	5 : 0.01	i : 0.01	b : 0.01	
d : 0.22	f : 0.16	c : 0.13	= : 0.13	b : 0.07	4 : 0.05	2 : 0.05	g : 0.05	e : 0.05	3 : 0.01	i : 0.01	
d : 0.22	f : 0.16	c : 0.13	= : 0.13	b : 0.05	g : 0.05	] : 0.05	4 : 0.03	2 : 0.03	e : 0.03	3 : 0.01	a : 0.01	i : 0.01	
d : 0.18	f : 0.18	= : 0.16	c : 0.11	e : 0.05	g : 0.05	] : 0.05	4 : 0.03	3 : 0.03	2 : 0.03	6 : 0.01	i : 0.01	a : 0.01	
f : 0.18	= : 0.16	] : 0.13	d : 0.11	c : 0.07	3 : 0.05	g : 0.05	2 : 0.05	4 : 0.03	e : 0.03	b : 0.03	6 : 0.01	i : 0.01	
f : 0.20	= : 0.16	c : 0.11	b : 0.11	d : 0.09	3 : 0.07	g : 0.05	] : 0.05	e : 0.03	6 : 0.01	4 : 0.01	i : 0.01	2 : 0.01	
f : 0.18	= : 0.16	c : 0.13	] : 0.09	b : 0.09	d : 0.07	3 : 0.05	e : 0.03	g : 0.03	4 : 0.03	2 : 0.01	6 : 0.01	i : 0.01	a : 0.01	
= : 0.15	c : 0.15	3 : 0.15	f : 0.07	b : 0.07	2 : 0.07	4 : 0.07	d : 0.05	] : 0.05	e : 0.03	: : 0.01	6 : 0.01	g : 0.01	i : 0.01	a : 0.01	
= : 0.13	c : 0.13	3 : 0.13	f : 0.09	4 : 0.09	b : 0.07	d : 0.07	] : 0.05	2 : 0.05	: : 0.03	e : 0.03	6 : 0.01	a : 0.01	g : 0.01	5 : 0.01	
= : 0.13	c : 0.13	f : 0.11	3 : 0.11	4 : 0.09	b : 0.09	e : 0.07	: : 0.05	d : 0.05	a : 0.03	g : 0.03	2 : 0.01	5 : 0.01	] : 0.01	

#score	695.2009179161129
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_UTR_m2_run1.txt

#BEAR
[ccc"""ddddmmmmdddd333cccdd	chr1:1330800-1331032(-)$1	232	54	81	15.7470
ee[a!!ddddoooooodddd22aeeee	chr14:24731432-24731712(-)$1	280	250	277	11.5182
eee####ddddmmmmddddeeeee22d	chrX:153579955-153580227(-)$1	272	119	146	13.0301
hhh####ddddmmmmdddd333hhhhh	chr13:45914824-45915074(-)$1	250	75	102	13.7687
cccc[a[ddddmmmmdddd]a]ccc88	chr6:33257373-33257680(+)$1	307	248	275	13.2169
deeeeeeeeeemmmmeeeee333eeee	chr2:61405967-61406214(+)$1	247	26	53	10.4283
dddd[bbddddmmmmdddd]bb]dddd	chr16:89788812-89789069(+)$1	257	63	90	12.3461
ff[a"""ddddllldddd]affffff]	chr1:21926006-21926278(-)$1	272	162	189	11.0628
ffff!!eeeeemmmmeeeee22fffff	chr8:145753194-145753440(-)$1	246	131	158	9.9235
a[eeeeeddddmmmmdddd333eeeee	chr19:990695-990971(+)$1	276	204	231	13.1642
gdddd!!cccooooooccc4444dddd	chr17:73895654-73895936(-)$1	282	252	279	10.5802
dddd!!ddddoooooodddd333dddd	chr14:21490555-21490818(-)$1	263	142	169	12.3139
""cccbbddddmmmmdddd]bb]ccc0	chr16:28847899-28848115(+)$1	216	16	43	11.8747
dd"""a[ddddmmmmdddd]a333ddd	chr19:54971746-54972005(+)$1	259	114	141	14.8256
eeee!!a[ddddllldddd]a]eeeee	chrX:153323844-153324098(-)$1	254	146	173	12.0252
dddd[a!!ddddllldddd22a]dddd	chr1:19431061-19431273(-)$1	212	8	35	12.3332
eee!!bbddddmmmmdddd]bb4444e	chr12:6879278-6879542(+)$1	264	31	58	12.7058
eeee"""ddddmmmmdddd22eeeee:	chr22:22048698-22048983(+)$1	285	4	31	13.2719
ddd"""ddddoooooodddd333dddd	chr17:7080584-7080798(-)$1	214	19	46	12.7008
ffffff[ddddmmmmdddd]ffffff]	chr11:70266344-70266599(+)$1	255	126	153	11.6540
"ccc"""ddddmmmmddddccciiiii	chr1:1192409-1192667(-)$1	258	224	251	13.9344
dddd[a!!cccmmmmccc22a]dddd]	chr6:32134092-32134374(+)$1	282	91	118	11.0319
ccc"""eeeeemmmmeeeee4444ccc	chr22:44332770-44333055(+)$1	285	220	247	11.9181
ccc####eeeeellleeeee4444ccc	chr10:69571296-69571566(-)$1	270	16	43	10.9024
dddddd[ddddmmmmdddd22dddd44	chr19:7706757-7707030(+)$1	273	178	205	12.5883
!!ccc!!ddddmmmmddddccc22bbE	chr16:68573500-68573773(+)$1	273	190	217	11.7439
c==========mmmm==========ee	chr14:95085331-95085569(+)$1	238	91	118	9.9464
!dddd"""cccmmmmccc22dddd]hh	chr11:118514571-118514892(+)$1	321	79	106	9.9411
!ccc!!ddddnnnnndddd22ccc22c	chr1:1249190-1249463(-)$1	273	240	267	10.9833
[dddd!!ddddllldddd]dddd22ee	chr17:80054223-80054483(-)$1	260	35	62	10.2910
fff####ddddmmmmdddd4444ffff	chr8:144668914-144669154(-)$1	240	46	73	14.4355
iiiiiccccccmmmmccc]ccc]iiii	chr1:1256371-1256632(-)$1	261	117	144	9.6386
======[ddddmmmmdddd========	chr17:19459133-19459411(+)$1	278	187	214	13.3700
""ccc!!ddddmmmmdddd22ccc333	chr11:57510142-57510438(+)$1	296	15	42	14.1337
"""ccc[ddddmmmmdddd]ccc22cc	chr7:1476343-1476659(-)$1	316	161	188	12.7750
ccc####cccooooooccc22ccc22d	chr22:29949737-29949992(-)$1	255	200	227	10.6029
hhhhddddddddllldddd4444dddd	chr1:8074374-8074637(-)$1	263	207	234	10.9813
[gggggggcccmmmmccc]ggggggg]	chr12:117476910-117477127(-)$1	217	100	127	9.4842
dddd[bbddddmmmmdddd]bb]dddd	chr4:1368996-1369269(+)$1	273	149	176	12.3461
&bb"""eeeeemmmmeeeee333bbdd	chr1:1247641-1247912(-)$1	271	235	262	10.3854
[eeeee[ddddoooooodddd]eeeee	chr7:925524-925789(+)$1	265	156	183	10.1120
[a[bb[addddmmmmdddd]a]bb]a]	chr19:1271403-1271658(+)$1	255	85	112	12.5139
eeccc"""cccmmmmccc333ccc444	chr20:34214168-34214415(-)$1	247	137	164	11.8177
[dddd"""ddddllldddd333ddddc	chr16:89627208-89627471(+)$1	263	223	250	12.9207
ccc####eeeeellleeeee333ccc:	chr6:158451270-158451554(+)$1	284	238	265	10.3473
###a[ddddoooooodddd]a333ddd	chr19:40741131-40741412(-)$1	281	71	98	11.6078
[eeeee!!cccmmmmccceeeeeeeee	chr3:49051473-49051766(+)$1	293	112	139	9.6359
fffff!!ddddmmmmdddd]ffffff]	chr20:60773540-60773831(+)$1	291	205	232	12.4246
ccc[bb[ddddmmmmdddd]bb22ccc	chrX:47427976-47428222(+)$1	246	122	149	12.3817
eeee"""cccooooooccc333eeeee	chr20:33872160-33872456(-)$1	296	198	225	11.3455
fff####ddddmmmmdddd4444ffff	chr8:144668954-144669179(-)$1	225	71	98	14.4355
ccccc[ddddnnnnndddd]ccc]ccc	chr1:249151872-249152115(-)$1	243	214	241	10.3002

#otherMatches

#Seq PSSM
GCUCAUAGUUGGAGGUAACGACGGGAU	chr1:1330800-1331032(-)$1	232	54	81	15.7470
GGACGCUCUCGCAGAGGAGGAGGCCGU	chr14:24731432-24731712(-)$1	280	250	277	11.5182
GCCCAAAGGCUGAUGAGCCGGUCUUAC	chrX:153579955-153580227(-)$1	272	119	146	13.0301
CGUGCGGCCGCCGGCGCGGGAAAUGCG	chr13:45914824-45915074(-)$1	250	75	102	13.7687
UUCAUCCCCGCCAUGGCGGAGCUGAUC	chr6:33257373-33257680(+)$1	307	248	275	13.2169
CAGGUUUCGAGGCUGCUUGAGAGGACU	chr2:61405967-61406214(+)$1	247	26	53	10.4283
GGGACGCCCUGUGCUCAGGAGCCUCCU	chr16:89788812-89789069(+)$1	257	63	90	12.3461
UGGCAGAGCGGAGACCGCAGCGCAGAG	chr1:21926006-21926278(-)$1	272	162	189	11.0628
UGGGCGUCCUGCGCUCAGGAGCCCCGC	chr8:145753194-145753440(-)$1	246	131	158	9.9235
GUGUCCAUCAUGGCAGUGACCAUGGAC	chr19:990695-990971(+)$1	276	204	231	13.1642
GAGGCUCCGGCAUCCACCGUCUUGCCU	chr17:73895654-73895936(-)$1	282	252	279	10.5802
GGUGCCCUGUUUUCCUGCAGACUCACU	chr14:21490555-21490818(-)$1	263	142	169	12.3139
CAGCCCCCGAGACACCUUGAGGAGGCC	chr16:28847899-28848115(+)$1	216	16	43	11.8747
CGAAUGGGGGGGCCUCCCCGCUCGUGG	chr19:54971746-54972005(+)$1	259	114	141	14.8256
ugccaggggaagucucuucguaggcgg	chrX:153323844-153324098(-)$1	254	146	173	12.0252
UGUAACUACAGAGUGUCUGGUGCUGCA	chr1:19431061-19431273(-)$1	212	8	35	12.3332
UCUGGCUCCUCAGAUGAGGAAGAAGAA	chr12:6879278-6879542(+)$1	264	31	58	12.7058
GGGCCAUGGUCAGCCGACCCCGCCCUU	chr22:22048698-22048983(+)$1	285	4	31	13.2719
CCGCCCGCAUUUCUUCAUGUACAUGGU	chr17:7080584-7080798(-)$1	214	19	46	12.7008
UAAUGAUGGGUUCUGGCCUUUCAUUGU	chr11:70266344-70266599(+)$1	255	126	153	11.6540
CUGACUGGGCUCCUGAGCUUCAUGGUG	chr1:1192409-1192667(-)$1	258	224	251	13.9344
CUCAGUAGCCUCUUGAGGGAAGUGGGA	chr6:32134092-32134374(+)$1	282	91	118	11.0319
UCGCCAUGCCCAGCUGGGCAAACAUGA	chr22:44332770-44333055(+)$1	285	220	247	11.9181
gguaaauuggcccaaggucacauagcu	chr10:69571296-69571566(-)$1	270	16	43	10.9024
GCCCAGUUGGCCCACGCCGUCCUGGCC	chr19:7706757-7707030(+)$1	273	178	205	12.5883
CAGGAAUGGCCCCGAGGCCUCCGACCG	chr16:68573500-68573773(+)$1	273	190	217	11.7439
CAGGGUCCCUCCUAUGAGGGACUCUGG	chr14:95085331-95085569(+)$1	238	91	118	9.9464
CCCCAAAGGUCUGAGGACAGUGGGUGG	chr11:118514571-118514892(+)$1	321	79	106	9.9411
CAUCCCCUGGACCAACCAGAAGAUCCG	chr1:1249190-1249463(-)$1	273	240	267	10.9833
CGCACGGACCCUCAGGGUGGUGCUUGG	chr17:80054223-80054483(-)$1	260	35	62	10.2910
CCCCACUGCACCUUGGUGCUUCUGGGC	chr8:144668914-144669154(-)$1	240	46	73	14.4355
GCGGGGGGCGCAGCAGUGACUCAUCUG	chr1:1256371-1256632(-)$1	261	117	144	9.6386
GGUGGAGCUGGGCGCUCAGUCCAUCGU	chr17:19459133-19459411(+)$1	278	187	214	13.3700
UCAUACAGUGCUUUGGCAUGUUGUUCU	chr11:57510142-57510438(+)$1	296	15	42	14.1337
CCACAGAGGCUCUGAAGUCACUGCAGG	chr7:1476343-1476659(-)$1	316	161	188	12.7750
AGCUUCCGGCCUCUACGCCUCGCUUCC	chr22:29949737-29949992(-)$1	255	200	227	10.6029
AAUGGCCACUGCUUUGCAGAAAAUGGU	chr1:8074374-8074637(-)$1	263	207	234	10.9813
CGUCCCUUCCAGAUCUGGCAGGGGAUC	chr12:117476910-117477127(-)$1	217	100	127	9.4842
UUUCAGGGCUGGAGGCAGCACCAGAGA	chr4:1368996-1369269(+)$1	273	149	176	12.3461
CUGCCGCGUGCACCUGCAUGACACACG	chr1:1247641-1247912(-)$1	271	235	262	10.3854
UCUCUGUGGCAGGUACAUGUCCCAGAG	chr7:925524-925789(+)$1	265	156	183	10.1120
UUGGGGAUGCUGUGAGGUACUGCUGGU	chr19:1271403-1271658(+)$1	255	85	112	12.5139
CCGUGCUCGCAGAAGUGCCCACACAAC	chr20:34214168-34214415(-)$1	247	137	164	11.8177
UGGCCACGUGGUUCAACCAGCCGGCCC	chr16:89627208-89627471(+)$1	263	223	250	12.9207
GGAAGAAGGGGACCCUCCCCACAUCCC	chr6:158451270-158451554(+)$1	284	238	265	10.3473
AUACAGGGCCUGCCUGCUCCGAAAGCC	chr19:40741131-40741412(-)$1	281	71	98	11.6078
AUGCAGAUGCUCCCAGGCUUGCAGGCU	chr3:49051473-49051766(+)$1	293	112	139	9.6359
CGUGGGAGAUGAGUACAUUGCCGCGCU	chr20:60773540-60773831(+)$1	291	205	232	12.4246
UGCCCUCCCUGCCUGCAGGAAGACGCG	chrX:47427976-47428222(+)$1	246	122	149	12.3817
UGAGAUCGGCUGCUUUGCCAAGCUCAC	chr20:33872160-33872456(-)$1	296	198	225	11.3455
CCCCACUGCACCUUGGUGCUUCUGGGC	chr8:144668954-144669179(-)$1	225	71	98	14.4355
AGGGUAGUUUGAUGGAGGCAACCUCUG	chr1:249151872-249152115(-)$1	243	214	241	10.3002

#DB
.(((...((((....))))...)))))	chr1:1330800-1331032(-)$1	1	54	81	15.7470
((.(..((((......))))..)))))	chr14:24731432-24731712(-)$1	1	250	277	11.5182
(((....((((....)))))))))..)	chrX:153579955-153580227(-)$1	1	119	146	13.0301
(((....((((....))))...)))))	chr13:45914824-45915074(-)$1	1	75	102	13.7687
((((.(.((((....)))).).)))..	chr6:33257373-33257680(+)$1	1	248	275	13.2169
(((((((((((....)))))...))))	chr2:61405967-61406214(+)$1	1	26	53	10.4283
((((.((((((....)))).)).))))	chr16:89788812-89789069(+)$1	1	63	90	12.3461
((.(...((((...)))).))))))).	chr1:21926006-21926278(-)$1	1	162	189	11.0628
((((..(((((....)))))..)))))	chr8:145753194-145753440(-)$1	1	131	158	9.9235
(.(((((((((....))))...)))))	chr19:990695-990971(+)$1	1	204	231	13.1642
)((((..(((......)))....))))	chr17:73895654-73895936(-)$1	1	252	279	10.5802
((((..((((......))))...))))	chr14:21490555-21490818(-)$1	1	142	169	12.3139
..(((((((((....)))).)).))).	chr16:28847899-28848115(+)$1	1	16	43	11.8747
((...(.((((....)))).)...)))	chr19:54971746-54972005(+)$1	1	114	141	14.8256
((((..(.((((...)))).).)))))	chrX:153323844-153324098(-)$1	1	146	173	12.0252
((((.(..((((...))))..).))))	chr1:19431061-19431273(-)$1	1	8	35	12.3332
(((..((((((....)))).))....)	chr12:6879278-6879542(+)$1	1	31	58	12.7058
((((...((((....))))..))))).	chr22:22048698-22048983(+)$1	1	4	31	13.2719
(((...((((......))))...))))	chr17:7080584-7080798(-)$1	1	19	46	12.7008
((((((.((((....)))).)))))).	chr11:70266344-70266599(+)$1	1	126	153	11.6540
.(((...((((....))))))))))))	chr1:1192409-1192667(-)$1	1	224	251	13.9344
((((.(..(((....)))..).)))).	chr6:32134092-32134374(+)$1	1	91	118	11.0319
(((...(((((....)))))....)))	chr22:44332770-44333055(+)$1	1	220	247	11.9181
(((....(((((...)))))....)))	chr10:69571296-69571566(-)$1	1	16	43	10.9024
((((((.((((....))))..))))..	chr19:7706757-7707030(+)$1	1	178	205	12.5883
..(((..((((....)))))))..)))	chr16:68573500-68573773(+)$1	1	190	217	11.7439
)((((((((((....))))))))))((	chr14:95085331-95085569(+)$1	1	91	118	9.9464
.((((...(((....)))..)))).))	chr11:118514571-118514892(+)$1	1	79	106	9.9411
.(((..((((.....))))..)))..)	chr1:1249190-1249463(-)$1	1	240	267	10.9833
.((((..((((...)))).))))..))	chr17:80054223-80054483(-)$1	1	35	62	10.2910
(((....((((....))))....))))	chr8:144668914-144669154(-)$1	1	46	73	14.4355
(((((((((((....))).))).))))	chr1:1256371-1256632(-)$1	1	117	144	9.6386
((((((.((((....))))))))))))	chr17:19459133-19459411(+)$1	1	187	214	13.3700
..(((..((((....))))..)))...	chr11:57510142-57510438(+)$1	1	15	42	14.1337
...(((.((((....)))).)))..))	chr7:1476343-1476659(-)$1	1	161	188	12.7750
(((....(((......)))..)))..)	chr22:29949737-29949992(-)$1	1	200	227	10.6029
))))((((((((...))))....))))	chr1:8074374-8074637(-)$1	1	207	234	10.9813
.((((((((((....))).))))))).	chr12:117476910-117477127(-)$1	1	100	127	9.4842
((((.((((((....)))).)).))))	chr4:1368996-1369269(+)$1	1	149	176	12.3461
.((...(((((....)))))...))))	chr1:1247641-1247912(-)$1	1	235	262	10.3854
.(((((.((((......)))).)))))	chr7:925524-925789(+)$1	1	156	183	10.1120
.(.((.(((((....)))).).)).).	chr19:1271403-1271658(+)$1	1	85	112	12.5139
(((((...(((....)))...)))...	chr20:34214168-34214415(-)$1	1	137	164	11.8177
.((((...((((...))))...)))))	chr16:89627208-89627471(+)$1	1	223	250	12.9207
(((....(((((...)))))...))).	chr6:158451270-158451554(+)$1	1	238	265	10.3473
...(.((((......)))).)...)))	chr19:40741131-40741412(-)$1	1	71	98	11.6078
.(((((..(((....))))))))))))	chr3:49051473-49051766(+)$1	1	112	139	9.6359
(((((..((((....)))).)))))).	chr20:60773540-60773831(+)$1	1	205	232	12.4246
(((.((.((((....)))).))..)))	chrX:47427976-47428222(+)$1	1	122	149	12.3817
((((...(((......)))...)))))	chr20:33872160-33872456(-)$1	1	198	225	11.3455
(((....((((....))))....))))	chr8:144668954-144669179(-)$1	1	71	98	14.4355
(((((.((((.....)))).))).)))	chr1:249151872-249152115(-)$1	1	214	241	10.3002

#PSSM
d : 0.17	c : 0.15	[ : 0.13	e : 0.13	f : 0.11	" : 0.07	! : 0.05	h : 0.03	a : 0.01	g : 0.01	i : 0.01	= : 0.01	& : 0.01	# : 0.01	
d : 0.23	c : 0.19	e : 0.19	f : 0.11	" : 0.05	h : 0.03	= : 0.03	[ : 0.01	! : 0.01	i : 0.01	g : 0.01	b : 0.01	a : 0.01	# : 0.01	
c : 0.26	d : 0.21	e : 0.17	f : 0.09	[ : 0.05	h : 0.03	" : 0.03	= : 0.03	i : 0.01	g : 0.01	b : 0.01	# : 0.01	
c : 0.19	d : 0.19	# : 0.13	e : 0.13	" : 0.07	a : 0.05	f : 0.05	= : 0.03	! : 0.01	i : 0.01	h : 0.01	g : 0.01	b : 0.01	[ : 0.01	
" : 0.17	# : 0.13	! : 0.11	[ : 0.11	d : 0.11	c : 0.11	e : 0.07	f : 0.03	= : 0.03	b : 0.03	i : 0.01	g : 0.01	
" : 0.21	! : 0.19	# : 0.13	b : 0.09	a : 0.07	e : 0.07	d : 0.05	= : 0.03	c : 0.03	[ : 0.03	f : 0.01	g : 0.01	
" : 0.15	[ : 0.15	! : 0.15	d : 0.13	# : 0.13	e : 0.09	b : 0.07	a : 0.03	= : 0.01	c : 0.01	g : 0.01	
d : 0.63	e : 0.11	c : 0.07	! : 0.05	" : 0.05	[ : 0.01	= : 0.01	g : 0.01	
d : 0.69	c : 0.17	e : 0.11	= : 0.01	
d : 0.67	c : 0.17	e : 0.11	= : 0.01	o : 0.01	
d : 0.57	o : 0.13	e : 0.11	c : 0.11	n : 0.03	= : 0.01	
m : 0.65	o : 0.15	d : 0.07	l : 0.03	e : 0.03	n : 0.03	
m : 0.65	o : 0.15	l : 0.15	n : 0.03	
m : 0.65	o : 0.15	l : 0.15	n : 0.03	
m : 0.65	o : 0.15	l : 0.11	d : 0.03	n : 0.03	
d : 0.61	o : 0.13	e : 0.11	c : 0.11	= : 0.01	
d : 0.67	c : 0.17	e : 0.11	= : 0.01	o : 0.01	
d : 0.69	c : 0.17	e : 0.11	= : 0.01	
d : 0.65	e : 0.13	] : 0.07	c : 0.05	2 : 0.03	= : 0.01	3 : 0.01	
] : 0.26	e : 0.15	2 : 0.15	3 : 0.11	d : 0.09	4 : 0.07	c : 0.05	= : 0.03	a : 0.01	g : 0.01	
3 : 0.21	2 : 0.15	a : 0.11	4 : 0.11	b : 0.09	c : 0.09	f : 0.05	d : 0.05	e : 0.03	= : 0.03	g : 0.01	
3 : 0.23	c : 0.17	4 : 0.11	] : 0.09	b : 0.09	e : 0.05	f : 0.05	d : 0.05	2 : 0.03	= : 0.03	a : 0.01	g : 0.01	
c : 0.15	e : 0.13	3 : 0.13	4 : 0.13	] : 0.09	d : 0.09	f : 0.07	2 : 0.03	= : 0.03	a : 0.01	h : 0.01	i : 0.01	g : 0.01	b : 0.01	
d : 0.21	e : 0.17	c : 0.15	f : 0.11	2 : 0.07	4 : 0.05	3 : 0.03	i : 0.03	= : 0.03	b : 0.03	h : 0.01	g : 0.01	] : 0.01	
d : 0.23	c : 0.15	e : 0.15	f : 0.11	2 : 0.09	4 : 0.03	i : 0.03	b : 0.03	= : 0.03	] : 0.03	h : 0.01	3 : 0.01	g : 0.01	
d : 0.24	e : 0.19	c : 0.13	f : 0.11	2 : 0.05	4 : 0.05	h : 0.03	i : 0.03	8 : 0.01	b : 0.01	= : 0.01	3 : 0.01	g : 0.01	a : 0.01	
d : 0.24	e : 0.19	c : 0.13	] : 0.11	f : 0.05	h : 0.03	: : 0.03	i : 0.03	4 : 0.03	8 : 0.01	0 : 0.01	E : 0.01	= : 0.01	3 : 0.01	

#score	619.7700184958253
#seq	52
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_UTR_m2_run1.txt

#BEAR
iiiiiiiuuuuuuuuuuuuiiiii	chr6:32943808-32944047(+)$1	239	180	204	23.1308
[cccawwwwwwwwwwwwwwa]ccc	chr17:34866579-34866862(-)$1	283	247	271	21.5057
e!!bb[atttttttttttabb22e	chr19:15514347-15514627(-)$1	280	167	191	22.3947
##eeeeeuuuuuuuuuuuueeeee	chr12:62928537-62928810(+)$1	273	198	222	23.5065
hhhhhhhttttttttttthhhhhh	chr8:20067776-20068052(+)$1	276	238	262	20.5645
:eeeeeuuuuuuuuuuuueeeeeb	chr19:41800205-41800466(+)$1	261	185	209	21.5384
hhhhccctttttttttttccc22h	chr16:67202703-67202935(+)$1	232	39	63	22.1071
"""ddddwwwwwwwwwwwwwwddd	chr3:14487151-14487459(+)$1	308	247	271	21.2311
ee!!bbuuuuuuuuuuuubb]eee	chr16:67763783-67764066(-)$1	283	109	133	22.3981
eeee[bbtttttttttttbbeeee	chr15:72501065-72501333(-)$1	268	9	33	22.5568
""eeeeevvvvvvvvvvvvveeee	chr3:195792354-195792572(-)$1	218	50	74	23.1701
###dddduuuuuuuuuuuudddd2	chr16:84108167-84108457(-)$1	290	89	113	22.5995
ffffffwwwwwwwwwwwwwwffff	chr17:43174394-43174649(+)$1	255	171	195	20.8966
[ccc[bbuuuuuuuuuuuubb]cc	chr11:62396319-62396573(-)$1	254	68	92	22.6637
eeecccuuuuuuuuuuuuccc333	chr19:49588739-49588976(+)$1	237	27	51	22.9843
ffffffwwwwwwwwwwwwwwffff	chr16:89805488-89805768(-)$1	280	70	94	20.8966
iiiiiiitttttttttttiiiiii	chr16:89833448-89833674(-)$1	226	124	148	22.8339
!!dddduuuuuuuuuuuudddd44	chr11:61643871-61644109(-)$1	238	25	49	22.6009
ggggyyyyyyyyyyyyyyyygggg	chr12:56566284-56566585(-)$1	301	272	296	21.0912
d[dddduuuuuuuuuuuudddddd	chr6:43517123-43517376(-)$1	253	99	123	21.9084
!!eeeeevvvvvvvvvvvvveeee	chr3:195782053-195782271(-)$1	218	50	74	23.3011
dd[cccuuuuuuuuuuuuccc]dd	chr11:61644009-61644273(-)$1	264	56	80	22.5427
h!!ddddwwwwwwwwwwwwwwddd	chr1:33137956-33138226(+)$1	270	176	200	21.0174
[fffffftttttttttttffffff	chr6:32948863-32949122(+)$1	259	140	164	22.1785
======uuuuuuuuuuuu======	chr6:32943932-32944148(+)$1	216	58	82	23.0961
"""ddddtttttttttttdddd33	chr9:95033714-95033929(-)$1	215	8	32	22.8503
[ffffffuuuuuuuuuuuufffff	chr22:22321913-22322154(-)$1	241	197	221	22.4363
::eeeeettttttttttteeeeeB	chr4:107154053-107154318(-)$1	265	166	190	19.8384
ff!!ccctttttttttttccc555	chr7:142658786-142659060(-)$1	274	24	48	20.5178
[ffffffwwwwwwwwwwwwwwfff	chr5:647819-648130(+)$1	311	154	178	20.8511
hhhhhhhuuuuuuuuuuuuhhhhh	chr1:32849380-32849664(-)$1	284	123	147	21.0482
eeeddddtttttttttttdddd]e	chr15:40462199-40462418(+)$1	219	102	126	22.2560
"""ddddvvvvvvvvvvvvvdddd	chr21:44493285-44493529(-)$1	244	39	63	22.4222
[fffffftttttttttttffffff	chr15:49574077-49574383(+)$1	306	221	245	22.1785
iiiiiiivvvvvvvvvvvvviiii	chr15:22928306-22928603(+)$1	297	199	223	22.6571
ddeeeeettttttttttteeeee:	chr9:114134608-114134867(-)$1	259	55	79	21.6100
ccc"""attttttttttta333cc	chr2:27592180-27592457(-)$1	277	240	264	22.7603
eeeeewwwwwwwwwwwwwweeeee	chr12:62919667-62919983(+)$1	316	41	65	21.2883
!!cccyyyyyyyyyyyyyyyyccc	chr3:37050279-37050497(+)$1	218	54	78	21.6700
[eeeeeyyyyyyyyyyyyyyyyee	chr10:103565780-103566000(-)$1	220	107	131	21.6232
=====bbtttttttttttbb]===	chr2:131883225-131883540(+)$1	315	95	119	22.7822
hhhhhhhvvvvvvvvvvvvvhhhh	chr14:91639547-91639888(+)$1	341	255	279	20.8333
""eeeeewwwwwwwwwwwwwweee	chr14:105916300-105916546(+)$1	246	84	108	21.8904
!eeeeeuuuuuuuuuuuueeeee]	chr1:215740775-215741048(+)$1	273	66	90	23.2382
$$$$bbuuuuuuuuuuuubb4444	chr20:33969620-33969930(-)$1	310	112	136	21.4322
[a[cccwwwwwwwwwwwwwwccc]	chr17:17720767-17721002(-)$1	235	29	53	22.3008
c[eeeeettttttttttteeeee]	chr19:41119423-41119691(+)$1	268	87	111	23.1807
!fffffftttttttttttffffff	chr20:62367831-62368101(+)$1	270	60	84	22.1820
hhhhhhhvvvvvvvvvvvvvhhhh	chr2:170871729-170871976(+)$1	247	181	205	20.8333
ff!!ccctttttttttttccc22f	chr15:28510660-28510919(-)$1	259	28	52	22.6587
!eeeeeuuuuuuuuuuuueeeee]	chr8:11687652-11687928(+)$1	276	80	104	23.2382
"""cccyyyyyyyyyyyyyyyycc	chr16:85682056-85682309(+)$1	253	79	103	21.6149
eeeeebbtttttttttttbb]eee	chr6:52938178-52938455(+)$1	277	24	48	22.6056

#otherMatches

#Seq PSSM
GGAAGAGAAUCAAACUACACUUUU	chr6:32943808-32944047(+)$1	239	180	204	23.1308
GAGACUGCCUGGCCAAACUGAUCU	chr17:34866579-34866862(-)$1	283	247	271	21.5057
UGGCCACUUCACACUCUUGGGAAA	chr19:15514347-15514627(-)$1	280	167	191	22.3947
ACUGUGUCAGUUAAAAAAAACACA	chr12:62928537-62928810(+)$1	273	198	222	23.5065
UUUUAAAAAUUAUGAACAUUUGAA	chr8:20067776-20068052(+)$1	276	238	262	20.5645
UACUCACCUCCAACCUACUGAGUG	chr19:41800205-41800466(+)$1	261	185	209	21.5384
GGGCCUGGAAAGCGGGGACAGGAG	chr16:67202703-67202935(+)$1	232	39	63	22.1071
ucaguuccacacauuuuuauugag	chr3:14487151-14487459(+)$1	308	247	271	21.2311
CCCUGCAGAGAUCCAGAAGCUGGU	chr16:67763783-67764066(-)$1	283	109	133	22.3981
UCCCAGCUCACUGUCCUUGCGGGA	chr15:72501065-72501333(-)$1	268	9	33	22.5568
CCCUGGGCAAGGAACAAUAACUCA	chr3:195792354-195792572(-)$1	218	50	74	23.1701
AACACUGUAUUCUUUAUUUCAGUU	chr16:84108167-84108457(-)$1	290	89	113	22.5995
GUUGGGUUCAUUAGCGCCAUCCCA	chr17:43174394-43174649(+)$1	255	171	195	20.8966
UUCCUCUCUCUCCUCUACCAGCGG	chr11:62396319-62396573(-)$1	254	68	92	22.6637
GCGACGGAAUCAGACGGACGUGGA	chr19:49588739-49588976(+)$1	237	27	51	22.9843
GUCUUCUCUCCUACUUCCAUGAAG	chr16:89805488-89805768(-)$1	280	70	94	20.8966
AGGUAGGUUCACUCUUUUCCUAUU	chr16:89833448-89833674(-)$1	226	124	148	22.8339
AUUCAGAUUCUUUAAACACUGGCA	chr11:61643871-61644109(-)$1	238	25	49	22.6009
AGGCUCCUUUCUUCUCACCUGCCU	chr12:56566284-56566585(-)$1	301	272	296	21.0912
UGCUUGUUCCUCCAUCAUCAAGAU	chr6:43517123-43517376(-)$1	253	99	123	21.9084
CUUGCUCUUAGAACUCACGUGAGU	chr3:195782053-195782271(-)$1	218	50	74	23.3011
cugguggaaucacauaaacacaag	chr11:61644009-61644273(-)$1	264	56	80	22.5427
UCUUGUAUUCAUUCCUCUCUCUAC	chr1:33137956-33138226(+)$1	270	176	200	21.0174
CUGGGGGUUUCAGUCAUCUCCCCA	chr6:32948863-32949122(+)$1	259	140	164	22.1785
AAGAGAAUCAAACUACACUUUUUU	chr6:32943932-32944148(+)$1	216	58	82	23.0961
GUAUGGACUUUAACAUUAUUCGGA	chr9:95033714-95033929(-)$1	215	8	32	22.8503
ACAUCUAUCACAGUUGCCUUGGGU	chr22:22321913-22322154(-)$1	241	197	221	22.4363
UUUAGGCGUGUAUUAAAAGCCUGG	chr4:107154053-107154318(-)$1	265	166	190	19.8384
GGCCUGAUAAAACUCUCUUCAAUG	chr7:142658786-142659060(-)$1	274	24	48	20.5178
ACCUGGAGCACUACGACAAGAUCC	chr5:647819-648130(+)$1	311	154	178	20.8511
GGGGUGAUCUCAGACACCUUUGCC	chr1:32849380-32849664(-)$1	284	123	147	21.0482
CCCUCUGGAUGUUUGGGAUAGGUG	chr15:40462199-40462418(+)$1	219	102	126	22.2560
uuugcagaguuuucuccucacugc	chr21:44493285-44493529(-)$1	244	39	63	22.4222
GUAGGAACCAUUCAGAAAUUCCUA	chr15:49574077-49574383(+)$1	306	221	245	22.1785
UCCAGGUAAAAUGGCAAAUAAUCU	chr15:22928306-22928603(+)$1	297	199	223	22.6571
CCUGCCUCUGGCAUUUUUAGGCAU	chr9:114134608-114134867(-)$1	259	55	79	21.6100
GAUAAGGGAGAGACAGGACAAAGU	chr2:27592180-27592457(-)$1	277	240	264	22.7603
UUUCCCUUCUUCUCUAACAGGAAA	chr12:62919667-62919983(+)$1	316	41	65	21.2883
GAGGAGAAAAGCUUUAAAAAAUCC	chr3:37050279-37050497(+)$1	218	54	78	21.6700
UGGCACUUUCUGUUAUCCAAAUGU	chr10:103565780-103566000(-)$1	220	107	131	21.6232
UCCAGGUACUAUUUUGAAGCGCUG	chr2:131883225-131883540(+)$1	315	95	119	22.7822
GCCCAUGAUCUUCCUGUUCACAUG	chr14:91639547-91639888(+)$1	341	255	279	20.8333
UGUCCUUCAGGGGAAAUAGAAGAG	chr14:105916300-105916546(+)$1	246	84	108	21.8904
AGGGGCAGAAGCUAGCGAGCCCCG	chr1:215740775-215741048(+)$1	273	66	90	23.2382
CCAAAGAUUCCCCACAGCCUGUUG	chr20:33969620-33969930(-)$1	310	112	136	21.4322
AGCCAUAUCCUCUGAGCCUCauga	chr17:17720767-17721002(-)$1	235	29	53	22.3008
CGAAAAGGGGAAAACGAGUUUUUA	chr19:41119423-41119691(+)$1	268	87	111	23.1807
GCGCAGCAGGUGGGUGAGGCUGCG	chr20:62367831-62368101(+)$1	270	60	84	22.1820
UCUGUCAUUUUUGGAAGCAUUGAC	chr2:170871729-170871976(+)$1	247	181	205	20.8333
CUAUCUGUUUGAAGGCUCCAGUGA	chr15:28510660-28510919(-)$1	259	28	52	22.6587
UAAUCUUCUUAUCUGUCUAGGUUU	chr8:11687652-11687928(+)$1	276	80	104	23.2382
GCCACCGUCUUCUCCUCCACAGGG	chr16:85682056-85682309(+)$1	253	79	103	21.6149
UUGGACAUAUUGAUACAUUGUUCC	chr6:52938178-52938455(+)$1	277	24	48	22.6056

#DB
(((((((............)))))	chr6:32943808-32944047(+)$1	1	180	204	23.1308
.((((..............).)))	chr17:34866579-34866862(-)$1	1	247	271	21.5057
(..((.(...........)))..)	chr19:15514347-15514627(-)$1	1	167	191	22.3947
..(((((............)))))	chr12:62928537-62928810(+)$1	1	198	222	23.5065
(((((((...........))))))	chr8:20067776-20068052(+)$1	1	238	262	20.5645
.(((((............)))))(	chr19:41800205-41800466(+)$1	1	185	209	21.5384
(((((((...........)))..)	chr16:67202703-67202935(+)$1	1	39	63	22.1071
...((((..............)))	chr3:14487151-14487459(+)$1	1	247	271	21.2311
((..((............)).)))	chr16:67763783-67764066(-)$1	1	109	133	22.3981
((((.((...........))))))	chr15:72501065-72501333(-)$1	1	9	33	22.5568
..(((((.............))))	chr3:195792354-195792572(-)$1	1	50	74	23.1701
...((((............)))).	chr16:84108167-84108457(-)$1	1	89	113	22.5995
((((((..............))))	chr17:43174394-43174649(+)$1	1	171	195	20.8966
.(((.((............)).))	chr11:62396319-62396573(-)$1	1	68	92	22.6637
((((((............)))...	chr19:49588739-49588976(+)$1	1	27	51	22.9843
((((((..............))))	chr16:89805488-89805768(-)$1	1	70	94	20.8966
(((((((...........))))))	chr16:89833448-89833674(-)$1	1	124	148	22.8339
..((((............))))..	chr11:61643871-61644109(-)$1	1	25	49	22.6009
((((................))))	chr12:56566284-56566585(-)$1	1	272	296	21.0912
(.((((............))))))	chr6:43517123-43517376(-)$1	1	99	123	21.9084
..(((((.............))))	chr3:195782053-195782271(-)$1	1	50	74	23.3011
((.(((............))).))	chr11:61644009-61644273(-)$1	1	56	80	22.5427
(..((((..............)))	chr1:33137956-33138226(+)$1	1	176	200	21.0174
.((((((...........))))))	chr6:32948863-32949122(+)$1	1	140	164	22.1785
((((((............))))))	chr6:32943932-32944148(+)$1	1	58	82	23.0961
...((((...........))))..	chr9:95033714-95033929(-)$1	1	8	32	22.8503
.((((((............)))))	chr22:22321913-22322154(-)$1	1	197	221	22.4363
..(((((...........))))))	chr4:107154053-107154318(-)$1	1	166	190	19.8384
((..(((...........)))...	chr7:142658786-142659060(-)$1	1	24	48	20.5178
.((((((..............)))	chr5:647819-648130(+)$1	1	154	178	20.8511
(((((((............)))))	chr1:32849380-32849664(-)$1	1	123	147	21.0482
(((((((...........)))).)	chr15:40462199-40462418(+)$1	1	102	126	22.2560
...((((.............))))	chr21:44493285-44493529(-)$1	1	39	63	22.4222
.((((((...........))))))	chr15:49574077-49574383(+)$1	1	221	245	22.1785
(((((((.............))))	chr15:22928306-22928603(+)$1	1	199	223	22.6571
))(((((...........))))).	chr9:114134608-114134867(-)$1	1	55	79	21.6100
(((...(...........)...))	chr2:27592180-27592457(-)$1	1	240	264	22.7603
(((((..............)))))	chr12:62919667-62919983(+)$1	1	41	65	21.2883
..(((................)))	chr3:37050279-37050497(+)$1	1	54	78	21.6700
.(((((................))	chr10:103565780-103566000(-)$1	1	107	131	21.6232
(((((((...........)).)))	chr2:131883225-131883540(+)$1	1	95	119	22.7822
(((((((.............))))	chr14:91639547-91639888(+)$1	1	255	279	20.8333
..(((((..............)))	chr14:105916300-105916546(+)$1	1	84	108	21.8904
.(((((............))))).	chr1:215740775-215741048(+)$1	1	66	90	23.2382
....((............))....	chr20:33969620-33969930(-)$1	1	112	136	21.4322
.(.(((..............))).	chr17:17720767-17721002(-)$1	1	29	53	22.3008
(.(((((...........))))).	chr19:41119423-41119691(+)$1	1	87	111	23.1807
.((((((...........))))))	chr20:62367831-62368101(+)$1	1	60	84	22.1820
(((((((.............))))	chr2:170871729-170871976(+)$1	1	181	205	20.8333
((..(((...........)))..)	chr15:28510660-28510919(-)$1	1	28	52	22.6587
.(((((............))))).	chr8:11687652-11687928(+)$1	1	80	104	23.2382
...(((................))	chr16:85682056-85682309(+)$1	1	79	103	21.6149
(((((((...........)).)))	chr6:52938178-52938455(+)$1	1	24	48	22.6056

#PSSM
[ : 0.15	e : 0.13	h : 0.11	" : 0.11	! : 0.11	f : 0.07	i : 0.05	d : 0.05	# : 0.03	: : 0.03	= : 0.03	c : 0.03	g : 0.01	$ : 0.01	
e : 0.18	f : 0.16	" : 0.11	! : 0.09	h : 0.09	i : 0.05	c : 0.05	# : 0.03	[ : 0.03	d : 0.03	= : 0.03	g : 0.01	: : 0.01	$ : 0.01	a : 0.01	
e : 0.30	f : 0.13	! : 0.09	h : 0.09	c : 0.07	" : 0.07	i : 0.05	d : 0.03	[ : 0.03	= : 0.03	# : 0.01	g : 0.01	$ : 0.01	
e : 0.26	d : 0.15	c : 0.13	f : 0.13	h : 0.09	i : 0.05	! : 0.05	= : 0.03	b : 0.01	g : 0.01	" : 0.01	$ : 0.01	
e : 0.24	c : 0.15	d : 0.15	f : 0.13	h : 0.07	i : 0.05	b : 0.05	[ : 0.03	= : 0.03	a : 0.01	y : 0.01	" : 0.01	
e : 0.20	d : 0.15	c : 0.13	f : 0.13	b : 0.11	h : 0.07	i : 0.05	w : 0.03	y : 0.03	[ : 0.01	= : 0.01	" : 0.01	
u : 0.18	e : 0.13	d : 0.11	w : 0.09	f : 0.09	h : 0.07	b : 0.07	y : 0.07	i : 0.05	c : 0.05	a : 0.03	
t : 0.33	u : 0.30	w : 0.16	v : 0.11	y : 0.07	
t : 0.33	u : 0.30	w : 0.16	v : 0.11	y : 0.07	
t : 0.33	u : 0.30	w : 0.16	v : 0.11	y : 0.07	
t : 0.33	u : 0.30	w : 0.16	v : 0.11	y : 0.07	
t : 0.33	u : 0.30	w : 0.16	v : 0.11	y : 0.07	
t : 0.33	u : 0.30	w : 0.16	v : 0.11	y : 0.07	
t : 0.33	u : 0.30	w : 0.16	v : 0.11	y : 0.07	
t : 0.33	u : 0.30	w : 0.16	v : 0.11	y : 0.07	
t : 0.33	u : 0.30	w : 0.16	v : 0.11	y : 0.07	
t : 0.33	u : 0.30	w : 0.16	v : 0.11	y : 0.07	
t : 0.33	u : 0.30	w : 0.16	v : 0.11	y : 0.07	
w : 0.16	u : 0.11	e : 0.11	v : 0.11	c : 0.09	b : 0.09	d : 0.07	y : 0.07	f : 0.05	a : 0.03	h : 0.01	i : 0.01	= : 0.01	
e : 0.15	b : 0.13	w : 0.13	v : 0.11	c : 0.09	d : 0.09	y : 0.07	f : 0.07	i : 0.03	h : 0.03	a : 0.01	= : 0.01	3 : 0.01	
e : 0.20	c : 0.11	d : 0.11	f : 0.11	] : 0.07	h : 0.07	w : 0.07	i : 0.05	y : 0.05	b : 0.03	g : 0.01	= : 0.01	3 : 0.01	4 : 0.01	
e : 0.26	d : 0.15	f : 0.13	h : 0.07	i : 0.05	c : 0.05	2 : 0.05	] : 0.03	3 : 0.03	= : 0.03	y : 0.03	g : 0.01	5 : 0.01	4 : 0.01	
e : 0.28	f : 0.13	c : 0.11	d : 0.11	h : 0.07	i : 0.05	2 : 0.05	3 : 0.03	4 : 0.03	= : 0.03	g : 0.01	5 : 0.01	] : 0.01	
e : 0.20	f : 0.15	c : 0.09	h : 0.09	d : 0.09	] : 0.07	i : 0.05	3 : 0.03	4 : 0.03	= : 0.03	b : 0.01	2 : 0.01	g : 0.01	B : 0.01	5 : 0.01	: : 0.01	

#score	1169.5156279459918
#seq	53
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_transcript_m2_run2.txt

#BEAR
hh[a!!eeeeeqqqqqqqqeeeee22a2	chr21:47649294-47649574(+)$1	280	231	259	16.0499
cc[bb[ccc[aqqqqqqqqa]cccbb]c	chr16:89556014-89556301(-)$1	287	78	106	15.8963
ddd[gggggggqqqqqqqqggggggg22	chr18:75684197-75684461(-)$1	264	58	86	16.0661
:ggggggg!!aqqqqqqqqa22gggggg	chr16:89030303-89030544(-)$1	241	132	160	15.1499
fff[a[eeeeeqqqqqqqqeeeee]a]f	chr1:2315679-2315948(-)$1	269	67	95	16.7710
dd[dddd[cccqqqqqqqqccc]dddd]	chr19:451307-451597(-)$1	290	39	67	15.9120
b[bb[ffffffqqqqqqqqffffffbb]	chr4:1973897-1974180(+)$1	283	244	272	14.6349
##ccc"""cccqqqqqqqqccc4444cc	chr22:48180236-48180495(+)$1	259	159	187	17.6152
((((a[eeeeeqqqqqqqqeeeee]agg	chr20:31170882-31171173(-)$1	291	202	230	14.4230
c[iiiiiiiiiqqqqqqqqiiiiiiiii	chr1:144932212-144932487(-)$1	275	58	86	16.7292
#bb[bb[ddddqqqqqqqqdddd]bb22	chr7:1889363-1889609(-)$1	246	132	160	15.3444
fffff[eeeeeqqqqqqqqeeeee]fff	chr4:2935812-2936118(-)$1	306	87	115	16.3118
b!!ffffffbbqqqqqqqqbb]ffffff	chr7:816005-816335(+)$1	330	266	294	15.0369
eeeffffff[aqqqqqqqqa]ffffff:	chr7:1892547-1892766(-)$1	219	91	119	14.5769
eee[gggggggqqqqqqqqgggggggee	chr16:89008283-89008572(-)$1	289	151	179	16.3257
%%%%%ccccccqqqqqqqqccc]ccc22	chr22:49942371-49942612(-)$1	241	193	221	14.0829
cccccceeeeeqqqqqqqqeeeee]ccc	chrX:130951008-130951263(-)$1	255	115	143	16.5690
[ccc[ccccccqqqqqqqqccc]ccc]c	chr7:64459472-64459774(-)$1	302	37	65	17.3875
eeee[ffffffqqqqqqqqffffffeee	chr5:297301-297540(+)$1	239	146	174	15.1135
eeee####cccqqqqqqqqccc]eeeee	chr7:1889699-1889952(-)$1	253	100	128	16.7550
dddd!!eeeeeqqqqqqqqeeeee333d	chr7:150798111-150798357(+)$1	246	165	193	16.5639
]eeeeeccc[aqqqqqqqqa]cccgggg	chr19:3698782-3699036(-)$1	254	171	199	15.7090
======eeeeeqqqqqqqqeeeee]===	chr8:94748475-94748693(-)$1	218	119	147	17.0188
fffff!!ddddqqqqqqqqdddd22fff	chr2:97495940-97496181(-)$1	241	83	111	16.4905
[dddd!!ddddqqqqqqqqdddd333dd	chr5:81045886-81046157(-)$1	271	60	88	16.6659
gggggggddddqqqqqqqqdddd22ggg	chr15:90749345-90749617(+)$1	272	120	148	16.6859
c[ccc"""cccqqqqqqqqccc333ccc	chr16:88837509-88837745(-)$1	236	62	90	17.9948
c[a[bb[ddddqqqqqqqqdddd]bb]a	chr15:29236810-29237044(+)$1	234	78	106	16.1803
cc[bbaeeeeeqqqqqqqqeeeee]a]b	chr9:140634184-140634498(+)$1	314	235	263	16.0341
cccc[bbddddqqqqqqqqdddd22bb]	chr16:85647676-85647978(+)$1	302	205	233	15.8104
eeee!!eeeeeqqqqqqqqeeeee333e	chr8:144942707-144942938(-)$1	231	126	154	16.8912
D:eeeee[cccqqqqqqqqccc]eeeee	chr16:1368464-1368706(+)$1	242	151	179	14.5705
fff$$$$$cccqqqqqqqqccc]fffff	chr19:14268986-14269284(+)$1	298	210	238	16.0745
[dddd"""cccqqqqqqqqccc22dddd	chr22:19763950-19764229(+)$1	279	195	223	16.1689
ggggggeeeeeqqqqqqqqeeeee333g	chr22:48219326-48219577(+)$1	251	17	45	16.8883
cc]dddd:cccqqqqqqqqcccddddoo	chr2:3478009-3478281(+)$1	272	152	180	13.8987
####gggggggqqqqqqqqggggggg22	chr18:75690100-75690402(-)$1	302	216	244	16.5017
dd!!a!!ddddqqqqqqqqdddd22a]d	chr22:49935524-49935780(-)$1	256	139	167	16.9041
!!ffffff[bbqqqqqqqqbb]ffffff	chr1:1688862-1689081(-)$1	219	97	125	15.2608
ccc!!ffffffqqqqqqqqffffff]cc	chr13:114519001-114519240(+)$1	239	18	46	15.7270
=======[cccqqqqqqqqccc]=====	chr8:58118437-58118699(+)$1	262	29	57	17.8752
eeeccc[ddddqqqqqqqqdddd]ccc:	chr22:18588615-18588901(+)$1	286	149	177	15.6888
f[dddd[ddddqqqqqqqqdddddddd]	chr19:1412122-1412415(+)$1	293	20	48	15.5268
eee]ccc:cccqqqqqqqqccc:fffff	chr19:1942591-1942833(+)$1	242	67	95	14.3613
:bb[ccc[cccqqqqqqqqccc]ccc]b	chr5:296523-296768(+)$1	245	18	46	15.8706
g[a[cccbb[aqqqqqqqqa]bb]ccca	chr1:6095478-6095829(+)$1	351	297	325	15.4470
eee[dddd[bbqqqqqqqqbbdddd]ee	chr16:85667937-85668196(+)$1	259	75	103	14.6899
&&ccc"""cccqqqqqqqqccc22ccce	chr9:134350447-134350722(+)$1	275	125	153	16.2543
!ccc"""ddddqqqqqqqqdddd22ccc	chr8:144940587-144940876(-)$1	289	200	228	17.0937
Effffff[cccqqqqqqqqccc]fffff	chr16:1368424-1368653(+)$1	229	191	219	15.8224
"""ffffffbbqqqqqqqqbb]ffffff	chr16:1805899-1806166(+)$1	267	232	260	15.2159
GGiiiiiiiiiqqqqqqqqiiiiiiiii	chr16:89025230-89025487(-)$1	257	37	65	15.5701
gg"""bb[cccqqqqqqqqccc]bbggg	chr8:58127552-58127807(+)$1	255	81	109	16.3485
###a[bb[cccqqqqqqqqcccbb]a44	chr20:62551433-62551759(+)$1	326	47	75	16.4865
::ccc[eeeeeqqqqqqqqeeeee]ccc	chr16:89216474-89216722(+)$1	248	68	96	15.1235
[dddd!!ddddqqqqqqqqdddd22ddd	chr12:69099459-69099724(+)$1	265	125	153	16.0963
eeeee[cccbbqqqqqqqqbb]ccc]ee	chr13:114519122-114519397(+)$1	275	214	242	15.3411
"""hhhhhhhhqqqqqqqqhhhhhhhh]	chr8:128749845-128750118(+)$1	273	184	212	14.2052
fffff####bbqqqqqqqqbb4444fff	chr7:1880687-1880936(-)$1	249	146	174	15.3832
[a[a[a[ddddqqqqqqqqdddd]a]a]	chr15:50646628-50646907(-)$1	279	106	134	17.1276

#otherMatches

#Seq PSSM
GGACCACAGGGGCCAGAAGCCCUGGAGC	chr21:47649294-47649574(+)$1	280	231	259	16.0499
ccgUGAGAGGCGGACAGGGGGCUCCGGG	chr16:89556014-89556301(-)$1	287	78	106	15.8963
UGCAGCUCCGUGAGCCCCGAUGGAGCCA	chr18:75684197-75684461(-)$1	264	58	86	16.0661
UCUCUGUCCUCUCCUCACUGCAGACAGA	chr16:89030303-89030544(-)$1	241	132	160	15.1499
cugaugccaaagaggcagauuugggggu	chr1:2315679-2315948(-)$1	269	67	95	16.7710
cacuucuuggauauauaccucccagaaa	chr19:451307-451597(-)$1	290	39	67	15.9120
GUCCAUGUAGAAGGAAAGAUCUGCAGGU	chr4:1973897-1974180(+)$1	283	244	272	14.6349
CUGGACACCAGAUACUCACCUGCUCauc	chr22:48180236-48180495(+)$1	259	159	187	17.6152
GCGAGGAGCGCUGAUAACCGCGCUGCGG	chr20:31170882-31171173(-)$1	291	202	230	14.4230
CAGGGAGGGGAUUCGUCUUUCUCCUCCC	chr1:144932212-144932487(-)$1	275	58	86	16.7292
AGGUGUCGGGCACCGCGCCGUCCUGCUU	chr7:1889363-1889609(-)$1	246	132	160	15.3444
ggaucgggaucgggaucgggauccgggu	chr4:2935812-2936118(-)$1	306	87	115	16.3118
CAACCCCAGGUGAGAGCAAGCACUGGGG	chr7:816005-816335(+)$1	330	266	294	15.0369
GGACAGGACCCUGAGCCUUGAGUCCUGC	chr7:1892547-1892766(-)$1	219	91	119	14.5769
CUGAGCGGGGGGAGCGCGACCCCUGCCG	chr16:89008283-89008572(-)$1	289	151	179	16.3257
GGUCCCUGCAGAAACUCACCUGCCAGUA	chr22:49942371-49942612(-)$1	241	193	221	14.0829
GAGCCUGACCAGGGCGGGGUGGUUAAGG	chrX:130951008-130951263(-)$1	255	115	143	16.5690
ccugauucccacaacauuuuggcgagcc	chr7:64459472-64459774(-)$1	302	37	65	17.3875
CCGUUACCCUUAAAAAGUAAAGGGUACG	chr5:297301-297540(+)$1	239	146	174	15.1135
CCCCAGAAGGGGAGGCCUGCCCAGGGGU	chr7:1889699-1889952(-)$1	253	100	128	16.7550
CCACCAAGGAGCCUCCUUACUUCUGUAG	chr7:150798111-150798357(+)$1	246	165	193	16.5639
GACCCCAGCUGGCCAUAUACUGCUUCUG	chr19:3698782-3699036(-)$1	254	171	199	15.7090
UCUUCACGGGAUUGACUAUUCCUGAUGG	chr8:94748475-94748693(-)$1	218	119	147	17.0188
cuagcagcccucuggccacggggagguu	chr2:97495940-97496181(-)$1	241	83	111	16.4905
AUCGCggggcuggggcuggggcuggggc	chr5:81045886-81046157(-)$1	271	60	88	16.6659
CUCAGGGGGCCUCUGAUGUGGCCCUCCC	chr15:90749345-90749617(+)$1	272	120	148	16.6859
gcacuucguccuuaagaguggaacuggu	chr16:88837509-88837745(-)$1	236	62	90	17.9948
UGUACUGUGCAGAGAUACGUGCAGAGAG	chr15:29236810-29237044(+)$1	234	78	106	16.1803
GUGACCUGAGGACAGAAGCCCUUGUGAG	chr9:140634184-140634498(+)$1	314	235	263	16.0341
GUGGAGCCGAUUCAAUUAUAUUGCAGCA	chr16:85647676-85647978(+)$1	302	205	233	15.8104
AGCUGAUCAGCAGGAAGACGCUGGACGA	chr8:144942707-144942938(-)$1	231	126	154	16.8912
UUUCUGCGGGUAAGUUGUGAUCGGCAGA	chr16:1368464-1368706(+)$1	242	151	179	14.5705
GGCUGGACUCCUUGUUGAUGGAUGCUGC	chr19:14268986-14269284(+)$1	298	210	238	16.0745
CCUGAAAAGCAGAACCGCAUGUGAUCAG	chr22:19763950-19764229(+)$1	279	195	223	16.1689
GACAAUGGACAACGCUUGCUGUCugaua	chr22:48219326-48219577(+)$1	251	17	45	16.8883
ggcgggucggccucccccagcccacuga	chr2:3478009-3478281(+)$1	272	152	180	13.8987
gaagagguucuggaugaagggaauuuag	chr18:75690100-75690402(-)$1	302	216	244	16.5017
CAGGCAGGGUCAUGAAGGGGGCCAGGAU	chr22:49935524-49935780(-)$1	256	139	167	16.9041
GAGCCUGCGUGUGAUGGGCCAAGCAGGU	chr1:1688862-1689081(-)$1	219	97	125	15.2608
GUGUUCUGUAUGGGGAGAGAUGCAGUCA	chr13:114519001-114519240(+)$1	239	18	46	15.7270
GCCCGUGagcggcgacagacgcguaugg	chr8:58118437-58118699(+)$1	262	29	57	17.8752
agucugagucugaagccugagacccagg	chr22:18588615-18588901(+)$1	286	149	177	15.6888
GCAGCGCGUUCCAGUUCACGGACCGCUC	chr19:1412122-1412415(+)$1	293	20	48	15.5268
GGAAGGCGCUCGGAUUAGGGAGGGGGCU	chr19:1942591-1942833(+)$1	242	67	95	14.3613
acuguuugcacagaccuaagugggaaga	chr5:296523-296768(+)$1	245	18	46	15.8706
cacacaggcaggaaauaaacagcucugg	chr1:6095478-6095829(+)$1	351	297	325	15.4470
CCUACCAGCUCUGUGACUUGAUUGGGAG	chr16:85667937-85668196(+)$1	259	75	103	14.6899
AUUUGAAGAGGAGGAGAAACCUGACAAG	chr9:134350447-134350722(+)$1	275	125	153	16.2543
UGUGGAAGGGCGUGCUGCGGCCCGGCAC	chr8:144940587-144940876(-)$1	289	200	228	17.0937
UUUCUGCGGGUAAGUUGUGAUCGGCAGA	chr16:1368424-1368653(+)$1	229	191	219	15.8224
CACAGGGCUGAAAAGUACCUCAAGCCCU	chr16:1805899-1806166(+)$1	267	232	260	15.2159
GCCCUGGGUUGGUGCGGCACAGCCCGGG	chr16:89025230-89025487(-)$1	257	37	65	15.5701
accaaguaccuCAAGUGAUAGGAACGUC	chr8:58127552-58127807(+)$1	255	81	109	16.3485
GAAGAGGACGCACAGGACAGCGCCACGG	chr20:62551433-62551759(+)$1	326	47	75	16.4865
AAGACCGAGCAUUUGUCUCUGUUCUGUU	chr16:89216474-89216722(+)$1	248	68	96	15.1235
AGUGGUAGGGGAGGCAUCACCCCAGUCA	chr12:69099459-69099724(+)$1	265	125	153	16.0963
GGUGGACGGCCCCGUGGAUGGACUGACC	chr13:114519122-114519397(+)$1	275	214	242	15.3411
gaggggccccggcgcggagcggggUUCA	chr8:128749845-128750118(+)$1	273	184	212	14.2052
GGGCAGCAGCCAGGUUAUCGGGACGUGC	chr7:1880687-1880936(-)$1	249	146	174	15.3832
GCGGGCGACUGGAGGUUGGCAGUGGGCG	chr15:50646628-50646907(-)$1	279	106	134	17.1276

#DB
((.(..(((((........)))))..).	chr21:47649294-47649574(+)$1	1	231	259	16.0499
((.((.(((.(........).))))).)	chr16:89556014-89556301(-)$1	1	78	106	15.8963
(((.(((((((........)))))))..	chr18:75684197-75684461(-)$1	1	58	86	16.0661
.(((((((..(........)..))))))	chr16:89030303-89030544(-)$1	1	132	160	15.1499
(((.(.(((((........))))).).)	chr1:2315679-2315948(-)$1	1	67	95	16.7710
((.((((.(((........))).)))).	chr19:451307-451597(-)$1	1	39	67	15.9120
(.((.((((((........)))))))).	chr4:1973897-1974180(+)$1	1	244	272	14.6349
..(((...(((........)))....))	chr22:48180236-48180495(+)$1	1	159	187	17.6152
....(.(((((........))))).)))	chr20:31170882-31171173(-)$1	1	202	230	14.4230
(.(((((((((........)))))))))	chr1:144932212-144932487(-)$1	1	58	86	16.7292
.((.((.((((........)))).))..	chr7:1889363-1889609(-)$1	1	132	160	15.3444
(((((.(((((........))))).)))	chr4:2935812-2936118(-)$1	1	87	115	16.3118
(..((((((((........)).))))))	chr7:816005-816335(+)$1	1	266	294	15.0369
)))((((((.(........).)))))).	chr7:1892547-1892766(-)$1	1	91	119	14.5769
(((.(((((((........)))))))))	chr16:89008283-89008572(-)$1	1	151	179	16.3257
.....((((((........))).)))..	chr22:49942371-49942612(-)$1	1	193	221	14.0829
(((((((((((........))))).)))	chrX:130951008-130951263(-)$1	1	115	143	16.5690
.(((.((((((........))).))).)	chr7:64459472-64459774(-)$1	1	37	65	17.3875
((((.((((((........)))))))))	chr5:297301-297540(+)$1	1	146	174	15.1135
((((....(((........))).)))))	chr7:1889699-1889952(-)$1	1	100	128	16.7550
((((..(((((........)))))...)	chr7:150798111-150798357(+)$1	1	165	193	16.5639
.)))))(((.(........).)))((((	chr19:3698782-3699036(-)$1	1	171	199	15.7090
(((((((((((........))))).)))	chr8:94748475-94748693(-)$1	1	119	147	17.0188
(((((..((((........))))..)))	chr2:97495940-97496181(-)$1	1	83	111	16.4905
.((((..((((........))))...))	chr5:81045886-81046157(-)$1	1	60	88	16.6659
(((((((((((........))))..)))	chr15:90749345-90749617(+)$1	1	120	148	16.6859
(.(((...(((........)))...)))	chr16:88837509-88837745(-)$1	1	62	90	17.9948
(.(.((.((((........)))).)).)	chr15:29236810-29237044(+)$1	1	78	106	16.1803
((.((((((((........))))).).)	chr9:140634184-140634498(+)$1	1	235	263	16.0341
((((.((((((........))))..)).	chr16:85647676-85647978(+)$1	1	205	233	15.8104
((((..(((((........)))))...)	chr8:144942707-144942938(-)$1	1	126	154	16.8912
).(((((.(((........))).)))))	chr16:1368464-1368706(+)$1	1	151	179	14.5705
(((.....(((........))).)))))	chr19:14268986-14269284(+)$1	1	210	238	16.0745
.((((...(((........)))..))))	chr22:19763950-19764229(+)$1	1	195	223	16.1689
(((((((((((........)))))...)	chr22:48219326-48219577(+)$1	1	17	45	16.8883
)).)))).(((........)))((((..	chr2:3478009-3478281(+)$1	1	152	180	13.8987
....(((((((........)))))))..	chr18:75690100-75690402(-)$1	1	216	244	16.5017
((..(..((((........))))..).)	chr22:49935524-49935780(-)$1	1	139	167	16.9041
..((((((.((........)).))))))	chr1:1688862-1689081(-)$1	1	97	125	15.2608
(((..((((((........)))))).))	chr13:114519001-114519240(+)$1	1	18	46	15.7270
(((((((.(((........))).)))))	chr8:58118437-58118699(+)$1	1	29	57	17.8752
)))(((.((((........)))).))).	chr22:18588615-18588901(+)$1	1	149	177	15.6888
(.((((.((((........)))))))).	chr19:1412122-1412415(+)$1	1	20	48	15.5268
))).))).(((........))).(((((	chr19:1942591-1942833(+)$1	1	67	95	14.3613
.((.(((.(((........))).))).)	chr5:296523-296768(+)$1	1	18	46	15.8706
(.(.(((((.(........).)).))))	chr1:6095478-6095829(+)$1	1	297	325	15.4470
(((.((((.((........)))))).))	chr16:85667937-85668196(+)$1	1	75	103	14.6899
..(((...(((........)))..))))	chr9:134350447-134350722(+)$1	1	125	153	16.2543
.(((...((((........))))..)))	chr8:144940587-144940876(-)$1	1	200	228	17.0937
)((((((.(((........))).)))))	chr16:1368424-1368653(+)$1	1	191	219	15.8224
...((((((((........)).))))))	chr16:1805899-1806166(+)$1	1	232	260	15.2159
(((((((((((........)))))))))	chr16:89025230-89025487(-)$1	1	37	65	15.5701
((...((.(((........))).)))))	chr8:58127552-58127807(+)$1	1	81	109	16.3485
...(.((.(((........))))).)..	chr20:62551433-62551759(+)$1	1	47	75	16.4865
..(((.(((((........))))).)))	chr16:89216474-89216722(+)$1	1	68	96	15.1235
.((((..((((........))))..)))	chr12:69099459-69099724(+)$1	1	125	153	16.0963
(((((.(((((........)).))).))	chr13:114519122-114519397(+)$1	1	214	242	15.3411
...((((((((........)))))))).	chr8:128749845-128750118(+)$1	1	184	212	14.2052
(((((....((........))....)))	chr7:1880687-1880936(-)$1	1	146	174	15.3832
.(.(.(.((((........)))).).).	chr15:50646628-50646907(-)$1	1	106	134	17.1276

#PSSM
c : 0.15	e : 0.15	f : 0.09	[ : 0.08	d : 0.06	# : 0.06	g : 0.06	: : 0.05	b : 0.03	= : 0.03	! : 0.03	" : 0.03	h : 0.01	( : 0.01	% : 0.01	] : 0.01	D : 0.01	& : 0.01	E : 0.01	G : 0.01	
e : 0.16	c : 0.13	d : 0.11	f : 0.09	[ : 0.09	g : 0.06	# : 0.05	b : 0.03	! : 0.03	= : 0.03	: : 0.03	" : 0.03	h : 0.01	( : 0.01	% : 0.01	& : 0.01	G : 0.01	a : 0.01	
e : 0.18	c : 0.15	f : 0.11	d : 0.09	[ : 0.08	g : 0.05	b : 0.05	" : 0.05	i : 0.03	! : 0.03	= : 0.03	a : 0.03	# : 0.03	( : 0.01	% : 0.01	] : 0.01	
c : 0.15	[ : 0.13	f : 0.13	d : 0.11	e : 0.09	a : 0.05	b : 0.05	g : 0.05	i : 0.03	= : 0.03	! : 0.03	( : 0.01	% : 0.01	$ : 0.01	# : 0.01	] : 0.01	" : 0.01	h : 0.01	
c : 0.15	f : 0.13	d : 0.11	g : 0.09	[ : 0.09	! : 0.06	b : 0.06	a : 0.05	e : 0.05	i : 0.03	= : 0.03	" : 0.03	% : 0.01	# : 0.01	$ : 0.01	h : 0.01	
f : 0.13	! : 0.11	c : 0.11	[ : 0.09	g : 0.09	" : 0.08	b : 0.08	d : 0.06	i : 0.03	# : 0.03	e : 0.03	= : 0.03	a : 0.03	$ : 0.01	h : 0.01	
e : 0.19	c : 0.13	f : 0.13	g : 0.08	" : 0.08	[ : 0.08	! : 0.06	d : 0.05	b : 0.05	i : 0.03	# : 0.03	$ : 0.01	= : 0.01	h : 0.01	
d : 0.21	e : 0.18	[ : 0.11	f : 0.11	c : 0.08	g : 0.06	" : 0.06	i : 0.03	# : 0.03	: : 0.03	$ : 0.01	b : 0.01	h : 0.01	
c : 0.33	d : 0.19	e : 0.18	f : 0.09	g : 0.05	i : 0.03	[ : 0.03	! : 0.01	b : 0.01	h : 0.01	# : 0.01	
c : 0.28	d : 0.19	e : 0.18	b : 0.09	[ : 0.06	g : 0.05	f : 0.05	i : 0.03	! : 0.01	h : 0.01	
c : 0.28	d : 0.19	e : 0.18	b : 0.09	a : 0.08	g : 0.05	f : 0.05	i : 0.03	h : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.28	d : 0.19	e : 0.18	b : 0.09	a : 0.08	g : 0.05	f : 0.05	i : 0.03	h : 0.01	
c : 0.28	d : 0.19	e : 0.18	b : 0.09	] : 0.06	g : 0.05	f : 0.05	i : 0.03	2 : 0.01	h : 0.01	
c : 0.31	d : 0.21	e : 0.18	f : 0.06	] : 0.06	g : 0.05	i : 0.03	2 : 0.01	b : 0.01	h : 0.01	4 : 0.01	
d : 0.23	e : 0.18	] : 0.16	f : 0.11	g : 0.06	c : 0.05	4 : 0.03	i : 0.03	2 : 0.03	b : 0.03	3 : 0.01	: : 0.01	h : 0.01	
e : 0.21	f : 0.16	2 : 0.13	c : 0.09	] : 0.08	g : 0.06	d : 0.06	4 : 0.03	i : 0.03	3 : 0.03	b : 0.03	= : 0.01	h : 0.01	
f : 0.16	] : 0.13	2 : 0.11	c : 0.11	g : 0.08	d : 0.08	3 : 0.08	b : 0.06	4 : 0.03	i : 0.03	e : 0.03	= : 0.01	h : 0.01	a : 0.01	
f : 0.16	c : 0.16	g : 0.11	b : 0.08	a : 0.08	d : 0.08	3 : 0.06	] : 0.06	e : 0.05	i : 0.03	= : 0.03	2 : 0.01	4 : 0.01	h : 0.01	
f : 0.16	c : 0.15	] : 0.11	e : 0.09	g : 0.08	d : 0.08	2 : 0.06	3 : 0.05	a : 0.03	b : 0.03	i : 0.03	= : 0.03	o : 0.01	4 : 0.01	h : 0.01	
f : 0.16	c : 0.13	e : 0.13	g : 0.09	] : 0.09	2 : 0.08	d : 0.08	i : 0.03	: : 0.03	= : 0.03	a : 0.03	b : 0.03	o : 0.01	4 : 0.01	

#score	956.3205929470444
#seq	60
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_transcript_m1_run2.txt

#BEAR
iiiiiiiii[cccddddmmmmdddd]ccciiiiiiiii	chr1:204523580-204523900(+)$1	320	66	104	16.6600
[dddd!!a!!a!!ddddmmmmdddda22a]ddddgggg	chr3:48445184-48445437(-)$1	253	212	250	13.0558
iiiiiiiiibba[cccmmmmccc]a]bb]iiiiiiiii	chr5:176524942-176525195(+)$1	253	185	223	15.8368
g[ccc[bb####cccooooooccc22bbccc]gggggg	chrX:48681489-48681763(+)$1	274	27	65	14.5647
[bb####==========oooooo==========bb]a]	chr6:64291010-64291280(+)$1	270	157	195	16.3161
!!==========!!ccclllccc22==========333	chr4:2517048-2517300(+)$1	252	156	194	18.7404
a[==========[ddddmmmmdddd333==========	chr3:13357655-13357941(-)$1	286	213	251	19.0421
##==========="""ammmma22===========555	chr15:34817397-34817642(-)$1	245	94	132	15.8028
==[==========[cccqqqqqqqqccc==========	chr2:234379900-234380165(+)$1	265	23	61	14.3273
gggggg[dddd!!cccoooooocccdddd]ggggggg:	chr3:9876873-9877166(+)$1	293	85	123	13.3366
=========%%%%%%ccclllccc333===========	chr2:70438798-70439029(-)$1	231	108	146	16.1009
=====[ccc"""eeeeemmmmeeeee333ccc]=====	chr3:5026686-5026922(+)$1	236	63	101	16.6344
+ggggggg[ccc!!cccmmmmccc4444ccc]gggggg	chr6:1314803-1315057(+)$1	254	64	102	15.9672
==========$$$$$ccclllccc22============	chr14:105185518-105185831(+)$1	313	113	151	18.4635
c]ddddiiiiiiiiiooooooiiiiiiiiiiiiiiiii	chr18:8639184-8639467(+)$1	283	158	196	15.9900
======[==========mmmm==========]======	chr13:107195699-107195982(-)$1	283	12	50	20.1107
iiiiiiiii[bb[cccnnnnnccc]bb333iiiiiiii	chr10:99216700-99217040(+)$1	340	219	257	16.5062
eeeeeccc!!ccc[ddddllldddd]ccc4444ccc]e	chr10:135233575-135233842(+)$1	267	180	218	12.0329
======[a[ccc[cccnnnnnccc]ccc333a]=====	chr3:49067122-49067396(-)$1	274	226	264	16.9286
==####ffffff!!cccmmmmccc]ffffff=======	chr14:24908929-24909190(-)$1	261	83	121	15.1694
ffffffiiiiiiiiiooooooiiiiiiiiieeeee[ar	chr17:45700436-45700685(+)$1	249	166	204	13.5901
ddddggggggg!!bboooooobb4444ggggggg]ddd	chr12:56119526-56119783(-)$1	257	92	130	13.1251
iiii"""ccc"""cccaooooooa]ccc]ccciiiiii	chr6:33259591-33259902(-)$1	311	230	268	17.0327
gggg$$$$$eeeeecccmmmmccc]eeeee333ggggg	chr3:156865508-156865812(-)$1	304	68	106	13.0836
!ggggggg[dddd[a[ammmma]a]dddd]ggggggg]	chr7:100218081-100218372(-)$1	291	75	113	13.8256
"bb[ggggggg[cccbbmmmmbb]ccc]ggggggg]bb	chr11:71949827-71950075(+)$1	248	169	207	13.3673
####bb!!gggggggooooooggggggg]bbeeeeecc	chr2:98272878-98273129(-)$1	251	103	141	12.6686
!!iiiiiiiii[eeeeemmmmeeeee4444iiiiiiii	chr2:153506177-153506424(+)$1	247	11	49	16.9320
!!iiiiiiiii[eeeeemmmmeeeee4444iiiiiiii	chr2:153506086-153506368(+)$1	282	102	140	16.9320
c!!ccc[bb[ccccccooooooccc333ccc]bb]ccc	chr16:1495675-1495989(-)$1	314	24	62	14.4356
b[iiiiiiiii[eeeeennnnneeeeeiiiiiiiii]b	chr16:67918154-67918399(+)$1	245	76	114	14.5888
=========!!ccc[ccclllccc]ccc4444======	chr16:15131345-15131631(+)$1	286	22	60	17.9433
iiiiiiiii####ddddllldddd333iiiiiiiii66	chr11:124789062-124789344(-)$1	282	145	183	16.4929
iiiiiiiii"""cccooooooccc55555iiiiiiiii	chr2:62957999-62958292(+)$1	293	104	142	15.2451
=========="""ddddoooooodddd===========	chr20:61303393-61303675(+)$1	282	56	94	18.5266
[==========####bbnnnnnbb333==========e	chr1:900616-900864(+)$1	248	165	203	17.7660
[ffffff[a[gggggggmmmmggggggg]a]ffffff]	chr20:62589018-62589278(-)$1	260	130	168	12.5400
cc!!ccc==========mmmm==========22ccc22	chr3:48555163-48555434(-)$1	271	6	44	16.0907
==========####cccmmmmccc4444==========	chr9:135933374-135933646(+)$1	272	191	229	20.6865
===bb"""iiiiiiiiimmmmiiiiiiiii22bbeeee	chr11:61171027-61171271(-)$1	244	99	137	14.7778
iiiiiiiii$$$$$cccmmmmccciiiiiiiiiccc&&	chr3:13357808-13358117(-)$1	309	33	71	15.4499
c[eeeee"""gggggggmmmmgggggggeeeee]ccce	chr2:61413423-61413652(+)$1	229	103	141	12.4985
cc!!iiiiiiiiiddddnnnnndddd]iiiiiiiiicc	chr20:62374561-62374795(+)$1	234	72	110	15.0001
""a[ddddiiiiiiiiimmmmiiiiiiiii]dddda]d	chr6:53132340-53132583(-)$1	243	104	142	13.9138
==========[ffffffmmmmffffff]==========	chr10:5805133-5805435(+)$1	302	165	203	16.9409
dd[bb!!iiiiiiiiinnnnniiiiiiiii4444bb]d	chr3:184106274-184106602(+)$1	328	18	56	13.4516
eeeee!!ccc"""cccooooooccc4444ccc]eeeee	chr2:188343227-188343495(-)$1	268	230	268	14.8302
ee[ccc[ccc"""cccmmmmccc]ccc]ccc22eeeee	chr7:128411344-128411588(+)$1	244	206	244	13.1587

#otherMatches

#Seq PSSM
GUGAAAUUUACAGUGUUUACAAAUGUCUGGAAUUUUGC	chr1:204523580-204523900(+)$1	320	66	104	16.6600
CUACUAGGAGGACGGCAGCUAUGCCCAGCAGGUACCAG	chr3:48445184-48445437(-)$1	253	212	250	13.0558
GCUCUGUGUGCCUGGGUCUUCCCUGAGCAACAUGGAGU	chr5:176524942-176525195(+)$1	253	185	223	15.8368
UGGCCCUCACUCAGGACCAGCCCUCAGAGGCAGCCACA	chrX:48681489-48681763(+)$1	274	27	65	14.5647
GACAAUUUGUUUUAUUAUGUAAUUGAUAAAAUGGUGAU	chr6:64291010-64291280(+)$1	270	157	195	16.3161
CUUCUGGGCAUCACGGCAAUGUCACGAUGCCCAGACUU	chr4:2517048-2517300(+)$1	252	156	194	18.7404
GUGAUCGUUGCUGAGAUUUCUGUCUGAUGGUGAUGAUU	chr3:13357655-13357941(-)$1	286	213	251	19.0421
AAAGUGGCAUUAUUGACUGCUGGUGUGAUGCUACUGUA	chr15:34817397-34817642(-)$1	245	94	132	15.8028
UGUGGGUGGAAGGUGGUUGUAUGUUACCUUUUCCACCU	chr2:234379900-234380165(+)$1	265	23	61	14.3273
CCCUGCCCCUUGUUGGUACAUUCCAGAGGCGCAGGGGC	chr3:9876873-9877166(+)$1	293	85	123	13.3366
CUUUGUAUGUCAUUUCCUUCAAGGCAUCAUGCAGAGUU	chr2:70438798-70439029(-)$1	231	108	146	16.1009
UUAUAUUUUGGAGCCUUCCUGAAGGUGUAAAAUUGUAA	chr3:5026686-5026922(+)$1	236	63	101	16.6344
AGCAAGUGUGauuuuuauuuuuaauauuauuuuauuuG	chr6:1314803-1315057(+)$1	254	64	102	15.9672
CCGUUCCAGCAUGUCCAGCCCCUGAAGUUGGAGUGGGG	chr14:105185518-105185831(+)$1	313	113	151	18.4635
CUAAUGAAGUGCAAAUAAAAUUUUGUAUUUAUGAAUGA	chr18:8639184-8639467(+)$1	283	158	196	15.9900
CUUUUUGuuuuuuuauauauuuauaaaaaaaGAAAAAG	chr13:107195699-107195982(-)$1	283	12	50	20.1107
CCAGUGCUGACCCGGACCUCCUCCAGGAUACAGCACUG	chr10:99216700-99217040(+)$1	340	219	257	16.5062
CCAGAAGCUCCAUGCUGGUCACUAGGGUGCUGUGCUCU	chr10:135233575-135233842(+)$1	267	180	218	12.0329
UAUUAAGAAUGACAAGCACGUCUUUUCAACAUGUUAGU	chr3:49067122-49067396(-)$1	274	226	264	16.9286
GACAUUAAUCUUUUCAACUCCUUGUAAGAUUUCCCAGU	chr14:24908929-24909190(-)$1	261	83	121	15.1694
aaaaCAGUUGGCGUUAAUAAAAAUGUCAAUGUGAAACU	chr17:45700436-45700685(+)$1	249	166	204	13.5901
GCCACCUUCAGGGCUGUGUGGAGAAGAUUGGGGGCUGG	chr12:56119526-56119783(-)$1	257	92	130	13.1251
GUGUAUAGCUUCCCACCUUCCAUGAGUGCAGCACACAG	chr6:33259591-33259902(-)$1	311	230	268	17.0327
GUAAAAAUGUAUCUUAUUUUUAUACAGAUAAAAUUGCA	chr3:156865508-156865812(-)$1	304	68	106	13.0836
UGCAGUGUAGCUGACCCUAAUGUGACGGUCAUACUGUC	chr7:100218081-100218372(-)$1	291	75	113	13.8256
UCUGUGCUGCCCUGCUCUGGGGAUGCACGGCGGCAGGG	chr11:71949827-71950075(+)$1	248	169	207	13.3673
CUCCGACUCUCAGGGCUGCCUCCCUGAGCUCCAGGGCC	chr2:98272878-98273129(-)$1	251	103	141	12.6686
CUACAAAUAGACAACGUUGGCAUGUUCUUUUCUGUUUG	chr2:153506177-153506424(+)$1	247	11	49	16.9320
CUACAAAUAGACAACGUUGGCAUGUUCUUUUCUGUUUG	chr2:153506086-153506368(+)$1	282	102	140	16.9320
GAUGUUGAGAGCUGAGAAAAACCUCCAAGGCCCUGAGC	chr16:1495675-1495989(-)$1	314	24	62	14.4356
CUGGGCCCAGGGCAGGUAUUGCGCCUGCUUGGGUUCUG	chr16:67918154-67918399(+)$1	245	76	114	14.5888
UCCCUAUUUGGUGCAAUGAAGUAUAGCAGAUAAAAUGG	chr16:15131345-15131631(+)$1	286	22	60	17.9433
agcauccagcagagugccuagcacauacuggaugcuca	chr11:124789062-124789344(-)$1	282	145	183	16.4929
aguuugauugauacugcauugagucuauagaucaaauu	chr2:62957999-62958292(+)$1	293	104	142	15.2451
UUAUGGACACACAGUUUGCAUCAGAACGUGUUUAUAGA	chr20:61303393-61303675(+)$1	282	56	94	18.5266
GCGUGUCCUCCCCUCCACUGCCUGCAUGGGGGGCGCGG	chr1:900616-900864(+)$1	248	165	203	17.7660
GCACUUUGUCCUUGCCACCAAUGGCGGGAGGAGGGUGG	chr20:62589018-62589278(-)$1	260	130	168	12.5400
GAGGCCUUUUCUCUCUGUGUACAGAGGGGAGUUAGGAG	chr3:48555163-48555434(-)$1	271	6	44	16.0907
GGGGUUAGGGACAUCCCCAAAGGGUAUACCCUGGCUCU	chr9:135933374-135933646(+)$1	272	191	229	20.6865
UCAGGUUUGAUGUAAGCAUGGGCUUACAUCCCCCAGGU	chr11:61171027-61171271(-)$1	244	99	137	14.7778
GGGAGGAGACCCUUGGAAAAGUCCUCUCUUCCCAGCUC	chr3:13357808-13358117(-)$1	309	33	71	15.4499
UGUAUUGUGGGAAGUCUUAAAAGAUUUUCAGUGGAAUU	chr2:61413423-61413652(+)$1	229	103	141	12.4985
UGUCGGCCCGUAGAUUUAUCAAGGGUGUUAUGGGCCCA	chr20:62374561-62374795(+)$1	234	72	110	15.0001
UCGUACUAUAGGGAGCCUAUUGGUUCUCUAUUAGUCUU	chr6:53132340-53132583(-)$1	243	104	142	13.9138
CAAAAAUAAGUCUAUUUUAACAAAUAGCUUUGUUUUUG	chr10:5805133-5805435(+)$1	302	165	203	16.9409
AACGUGCUGGGUAUUCAAAGAGAAUACUCAUAAAACCU	chr3:184106274-184106602(+)$1	328	18	56	13.4516
UAGCAAAGAAAAAUGAAUAUUCUCAGGAGUUCGUGCUA	chr2:188343227-188343495(-)$1	268	230	268	14.8302
AUUUUCCAAGAAAUAGAACUCUAGCUUAGAAUUAUGGA	chr7:128411344-128411588(+)$1	244	206	244	13.1587

#DB
(((((((((.(((((((....)))).))))))))))))	chr1:204523580-204523900(+)$1	1	66	104	16.6600
.((((..(..(..((((....)))))..).))))))))	chr3:48445184-48445437(-)$1	1	212	250	13.0558
((((((((((((.(((....))).).)).)))))))))	chr5:176524942-176525195(+)$1	1	185	223	15.8368
(.(((.((....(((......)))..))))).))))))	chrX:48681489-48681763(+)$1	1	27	65	14.5647
.((....((((((((((......)))))))))))).).	chr6:64291010-64291280(+)$1	1	157	195	16.3161
..((((((((((..(((...)))..))))))))))...	chr4:2517048-2517300(+)$1	1	156	194	18.7404
(.((((((((((.((((....))))...))))))))))	chr3:13357655-13357941(-)$1	1	213	251	19.0421
..(((((((((((...(....)..)))))))))))...	chr15:34817397-34817642(-)$1	1	94	132	15.8028
((.((((((((((.(((........)))))))))))))	chr2:234379900-234380165(+)$1	1	23	61	14.3273
((((((.((((..(((......))))))).))))))).	chr3:9876873-9877166(+)$1	1	85	123	13.3366
(((((((((......(((...)))...)))))))))))	chr2:70438798-70439029(-)$1	1	108	146	16.1009
(((((.(((...(((((....)))))...))).)))))	chr3:5026686-5026922(+)$1	1	63	101	16.6344
.(((((((.(((..(((....)))....))).))))))	chr6:1314803-1315057(+)$1	1	64	102	15.9672
((((((((((.....(((...)))..))))))))))))	chr14:105185518-105185831(+)$1	1	113	151	18.4635
).))))(((((((((......)))))))))((((((((	chr18:8639184-8639467(+)$1	1	158	196	15.9900
((((((.((((((((((....)))))))))).))))))	chr13:107195699-107195982(-)$1	1	12	50	20.1107
(((((((((.((.(((.....))).))...))))))))	chr10:99216700-99217040(+)$1	1	219	257	16.5062
((((((((..(((.((((...)))).)))....))).)	chr10:135233575-135233842(+)$1	1	180	218	12.0329
((((((.(.(((.(((.....))).)))...).)))))	chr3:49067122-49067396(-)$1	1	226	264	16.9286
((....((((((..(((....))).)))))))))))))	chr14:24908929-24909190(-)$1	1	83	121	15.1694
))))))(((((((((......)))))))))(((((.(.	chr17:45700436-45700685(+)$1	1	166	204	13.5901
(((((((((((..((......))....))))))).)))	chr12:56119526-56119783(-)$1	1	92	130	13.1251
((((...(((...((((......).))).)))))))))	chr6:33259591-33259902(-)$1	1	230	268	17.0327
((((.....((((((((....))).)))))...)))))	chr3:156865508-156865812(-)$1	1	68	106	13.0836
.(((((((.((((.(.(....).).)))).))))))).	chr7:100218081-100218372(-)$1	1	75	113	13.8256
.((.(((((((.(((((....)).))).))))))).))	chr11:71949827-71950075(+)$1	1	169	207	13.3673
....((..(((((((......))))))).)))))))))	chr2:98272878-98273129(-)$1	1	103	141	12.6686
..(((((((((.(((((....)))))....))))))))	chr2:153506177-153506424(+)$1	1	11	49	16.9320
..(((((((((.(((((....)))))....))))))))	chr2:153506086-153506368(+)$1	1	102	140	16.9320
(..(((.((.((((((......)))...))).)).)))	chr16:1495675-1495989(-)$1	1	24	62	14.4356
(.(((((((((.(((((.....)))))))))))))).)	chr16:67918154-67918399(+)$1	1	76	114	14.5888
(((((((((..(((.(((...))).)))....))))))	chr16:15131345-15131631(+)$1	1	22	60	17.9433
(((((((((....((((...))))...)))))))))..	chr11:124789062-124789344(-)$1	1	145	183	16.4929
(((((((((...(((......))).....)))))))))	chr2:62957999-62958292(+)$1	1	104	142	15.2451
((((((((((...((((......)))))))))))))))	chr20:61303393-61303675(+)$1	1	56	94	18.5266
.((((((((((....((.....))...)))))))))))	chr1:900616-900864(+)$1	1	165	203	17.7660
.((((((.(.(((((((....))))))).).)))))).	chr20:62589018-62589278(-)$1	1	130	168	12.5400
((..(((((((((((((....))))))))))..)))..	chr3:48555163-48555434(-)$1	1	6	44	16.0907
((((((((((....(((....)))....))))))))))	chr9:135933374-135933646(+)$1	1	191	229	20.6865
)))((...(((((((((....)))))))))..))((((	chr11:61171027-61171271(-)$1	1	99	137	14.7778
(((((((((.....(((....))))))))))))(((..	chr3:13357808-13358117(-)$1	1	33	71	15.4499
(.(((((...(((((((....)))))))))))).)))(	chr2:61413423-61413652(+)$1	1	103	141	12.4985
((..(((((((((((((.....)))).)))))))))))	chr20:62374561-62374795(+)$1	1	72	110	15.0001
..(.(((((((((((((....))))))))).))))).)	chr6:53132340-53132583(-)$1	1	104	142	13.9138
((((((((((.((((((....)))))).))))))))))	chr10:5805133-5805435(+)$1	1	165	203	16.9409
((.((..(((((((((.....)))))))))....)).)	chr3:184106274-184106602(+)$1	1	18	56	13.4516
(((((..(((...(((......)))....))).)))))	chr2:188343227-188343495(-)$1	1	230	268	14.8302
((.(((.(((...(((....))).))).)))..)))))	chr7:128411344-128411588(+)$1	1	206	244	13.1587

#PSSM
= : 0.25	i : 0.14	c : 0.10	[ : 0.08	! : 0.08	g : 0.06	e : 0.06	# : 0.04	d : 0.04	" : 0.04	a : 0.02	+ : 0.02	f : 0.02	b : 0.02	
= : 0.27	i : 0.14	[ : 0.08	! : 0.08	g : 0.08	d : 0.06	e : 0.06	b : 0.04	# : 0.04	f : 0.04	c : 0.04	] : 0.02	" : 0.02	
= : 0.29	i : 0.20	g : 0.08	d : 0.06	[ : 0.06	e : 0.06	! : 0.06	b : 0.04	# : 0.04	f : 0.04	c : 0.02	a : 0.02	
= : 0.29	i : 0.20	g : 0.08	d : 0.06	c : 0.06	# : 0.06	e : 0.06	f : 0.04	[ : 0.04	! : 0.04	b : 0.04	
= : 0.29	i : 0.20	g : 0.10	c : 0.08	d : 0.06	e : 0.06	b : 0.06	# : 0.04	f : 0.04	" : 0.02	$ : 0.02	
= : 0.27	i : 0.20	g : 0.10	c : 0.08	! : 0.06	[ : 0.04	# : 0.04	d : 0.04	f : 0.04	" : 0.04	$ : 0.02	b : 0.02	e : 0.02	
i : 0.25	= : 0.22	[ : 0.10	! : 0.08	g : 0.08	c : 0.06	f : 0.04	" : 0.04	b : 0.02	# : 0.02	$ : 0.02	e : 0.02	d : 0.02	
= : 0.29	i : 0.27	c : 0.10	g : 0.08	a : 0.04	b : 0.04	d : 0.04	" : 0.04	f : 0.02	$ : 0.02	! : 0.02	[ : 0.02	
i : 0.31	= : 0.29	c : 0.08	[ : 0.06	g : 0.06	! : 0.04	# : 0.02	d : 0.02	f : 0.02	$ : 0.02	b : 0.02	a : 0.02	" : 0.02	
= : 0.25	i : 0.18	c : 0.10	[ : 0.08	! : 0.06	" : 0.06	g : 0.06	# : 0.04	d : 0.04	b : 0.02	% : 0.02	f : 0.02	e : 0.02	$ : 0.02	
i : 0.18	= : 0.16	" : 0.12	c : 0.10	g : 0.10	# : 0.06	b : 0.04	d : 0.04	$ : 0.04	a : 0.02	% : 0.02	f : 0.02	e : 0.02	! : 0.02	[ : 0.02	
= : 0.14	c : 0.12	" : 0.12	i : 0.12	# : 0.08	[ : 0.08	! : 0.06	g : 0.06	$ : 0.04	f : 0.04	a : 0.02	% : 0.02	b : 0.02	e : 0.02	d : 0.02	
c : 0.14	! : 0.12	i : 0.12	= : 0.10	e : 0.10	[ : 0.08	" : 0.08	g : 0.06	# : 0.06	$ : 0.04	% : 0.02	d : 0.02	f : 0.02	
c : 0.25	d : 0.12	e : 0.10	i : 0.10	= : 0.06	! : 0.06	[ : 0.06	g : 0.06	$ : 0.04	# : 0.04	" : 0.02	% : 0.02	b : 0.02	f : 0.02	
c : 0.37	d : 0.14	i : 0.10	e : 0.08	= : 0.06	g : 0.06	" : 0.02	% : 0.02	$ : 0.02	b : 0.02	a : 0.02	[ : 0.02	# : 0.02	f : 0.02	
c : 0.37	d : 0.14	o : 0.12	e : 0.08	= : 0.06	i : 0.06	b : 0.04	g : 0.04	" : 0.02	[ : 0.02	f : 0.02	
c : 0.20	o : 0.18	d : 0.14	e : 0.08	= : 0.06	a : 0.06	n : 0.06	m : 0.04	b : 0.04	g : 0.04	i : 0.04	f : 0.02	
m : 0.47	o : 0.25	n : 0.12	c : 0.06	l : 0.04	q : 0.02	d : 0.02	
m : 0.47	o : 0.25	l : 0.12	n : 0.12	q : 0.02	
m : 0.47	o : 0.25	l : 0.12	n : 0.12	q : 0.02	
m : 0.43	o : 0.25	n : 0.12	l : 0.08	c : 0.06	q : 0.02	d : 0.02	
c : 0.31	o : 0.12	d : 0.10	i : 0.10	e : 0.06	g : 0.06	n : 0.06	a : 0.04	= : 0.04	b : 0.04	q : 0.02	f : 0.02	
c : 0.37	d : 0.12	i : 0.10	e : 0.08	o : 0.06	b : 0.06	g : 0.06	= : 0.04	2 : 0.02	q : 0.02	] : 0.02	f : 0.02	
c : 0.31	d : 0.14	i : 0.10	e : 0.08	] : 0.06	= : 0.06	g : 0.06	2 : 0.04	a : 0.04	q : 0.02	4 : 0.02	b : 0.02	f : 0.02	
] : 0.14	d : 0.12	i : 0.12	c : 0.10	= : 0.08	e : 0.08	2 : 0.06	3 : 0.06	4 : 0.06	g : 0.06	a : 0.02	q : 0.02	5 : 0.02	f : 0.02	
c : 0.12	i : 0.12	= : 0.10	3 : 0.10	e : 0.10	d : 0.08	4 : 0.08	] : 0.06	g : 0.06	2 : 0.04	f : 0.04	a : 0.02	b : 0.02	5 : 0.02	
c : 0.16	= : 0.12	3 : 0.12	4 : 0.12	i : 0.12	b : 0.06	d : 0.06	g : 0.06	f : 0.04	e : 0.04	2 : 0.02	5 : 0.02	] : 0.02	
= : 0.18	i : 0.18	c : 0.12	4 : 0.10	3 : 0.08	g : 0.08	] : 0.06	b : 0.04	d : 0.04	2 : 0.02	f : 0.02	e : 0.02	5 : 0.02	
= : 0.27	i : 0.18	c : 0.12	] : 0.08	4 : 0.08	3 : 0.06	d : 0.04	g : 0.04	e : 0.04	a : 0.02	f : 0.02	5 : 0.02	
= : 0.27	i : 0.25	c : 0.14	4 : 0.08	] : 0.06	3 : 0.04	g : 0.04	e : 0.04	f : 0.02	b : 0.02	a : 0.02	
= : 0.27	i : 0.22	c : 0.14	g : 0.08	4 : 0.06	3 : 0.04	e : 0.04	] : 0.04	d : 0.02	f : 0.02	b : 0.02	2 : 0.02	
= : 0.25	i : 0.22	] : 0.08	g : 0.08	c : 0.06	4 : 0.06	e : 0.06	2 : 0.06	d : 0.04	a : 0.02	3 : 0.02	f : 0.02	
= : 0.29	i : 0.25	g : 0.12	] : 0.06	e : 0.06	d : 0.04	4 : 0.04	b : 0.04	2 : 0.04	3 : 0.02	f : 0.02	
= : 0.31	i : 0.22	g : 0.14	e : 0.08	b : 0.06	c : 0.06	d : 0.04	f : 0.02	] : 0.02	4 : 0.02	
= : 0.31	i : 0.22	g : 0.14	e : 0.10	c : 0.08	b : 0.04	] : 0.04	f : 0.02	d : 0.02	
= : 0.27	i : 0.22	g : 0.12	c : 0.10	e : 0.08	] : 0.04	3 : 0.02	5 : 0.02	[ : 0.02	d : 0.02	f : 0.02	a : 0.02	b : 0.02	
= : 0.27	i : 0.16	g : 0.12	] : 0.08	c : 0.08	e : 0.06	a : 0.04	3 : 0.02	5 : 0.02	d : 0.02	b : 0.02	6 : 0.02	f : 0.02	2 : 0.02	& : 0.02	
= : 0.25	i : 0.16	e : 0.12	g : 0.08	] : 0.06	d : 0.06	c : 0.06	b : 0.04	3 : 0.02	5 : 0.02	: : 0.02	r : 0.02	6 : 0.02	2 : 0.02	& : 0.02	

#score	746.4826678779185
#seq	48
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF121XLA_HNRNPA1_transcript_m2_run2.txt

#BEAR
FFFeeeeeuuuuuuuuuuuueee	chr11:65271594-65271816(+)$1	222	176	199	16.4583
hh####cccrrrrrrrrrccc22	chr11:65273160-65273382(+)$1	222	143	166	9.6805
hhhhhhhhsssssssssshhhhh	chr8:121816283-121816587(-)$1	304	18	41	12.0491
czzzzzzzzzzzzzzzzzccc]c	chrX:132979402-132979647(-)$1	245	182	205	10.3560
ffffffuuuuuuuuuuuufffff	chr14:23793866-23794079(+)$1	213	177	200	18.0867
::ffffffssssssssssfffff	chr5:27481714-27481967(+)$1	253	105	128	12.7504
hhhhhhxxxxxxxxxxxxxxxhh	chrX:132718293-132718583(-)$1	290	183	206	13.1266
!ccc!!bbssssssssssbb22c	chr11:65272424-65272644(+)$1	220	36	59	14.1903
[dddd[bbssssssssssbb]dd	chrX:133038621-133038915(-)$1	294	94	117	13.4727
fff[ddddssssssssssdddd]	chr11:65270568-65270801(+)$1	233	102	125	14.4069
eee!!cccuuuuuuuuuuuuccc	chrX:133019010-133019282(-)$1	272	221	244	18.2333
:gggggggssssssssssggggg	chrX:132979447-132979702(-)$1	255	123	146	13.8273
afffffftttttttttttfffff	chr8:17764917-17765169(-)$1	252	143	166	17.5248
!!ddddxxxxxxxxxxxxxxxdd	chrX:132954608-132954905(-)$1	297	200	223	13.8352
ffffffvvvvvvvvvvvvvffff	chr3:30734709-30734974(+)$1	265	8	31	16.4739
eeeeyyyyyyyyyyyyyyyyeee	chr20:30269788-30270054(-)$1	266	172	195	16.5989
ggggyyyyyyyyyyyyyyyyggg	chr3:48754004-48754218(-)$1	214	164	187	17.4110
ffff[cccssssssssssccc]f	chr2:42397674-42397941(+)$1	267	13	36	15.7076
eeffffffssssssssssfffff	chr2:198284105-198284401(-)$1	296	253	276	14.6634
ggggggguuuuuuuuuuuugggg	chr11:2719371-2719609(-)$1	238	20	43	18.6147
ffffffvvvvvvvvvvvvvffff	chr3:30726752-30727017(+)$1	265	120	143	16.4739
c::eeeeesssssssssseeeee	chr6:119610903-119611175(-)$1	272	74	97	12.0651
fffffwwwwwwwwwwwwwwffff	chrX:133082985-133083239(-)$1	254	146	169	17.6443
eeee!!cccrrrrrrrrrccc22	chr12:9234979-9235258(-)$1	279	235	258	10.1113
fff[ddddssssssssssdddd]	chr11:65270601-65270813(+)$1	212	69	92	14.4069
Gddddvvvvvvvvvvvvvddddc	chr3:133478021-133478227(+)$1	206	115	138	14.1940
!!ffffffssssssssssfffff	chrX:153628243-153628492(+)$1	249	69	92	14.8935
========ssssssssss=====	chr14:23448929-23449206(-)$1	277	143	166	14.5476
c[ffffffrrrrrrrrrffffff	chr3:171777675-171777972(+)$1	297	96	119	9.8456
ffffffuuuuuuuuuuuufffff	chr11:65266546-65266775(+)$1	229	137	160	18.0867
hh####cccrrrrrrrrrccc22	chr11:65273123-65273347(+)$1	224	180	203	9.6805
ggggggguuuuuuuuuuuugggg	chr20:42088156-42088431(+)$1	275	238	261	18.6147
ccc[ddddrrrrrrrrrdddd]c	chr3:171860334-171860630(+)$1	296	53	76	9.4118
hhhhhhhhttttttttttthhhh	chr3:186336687-186336933(+)$1	246	182	205	15.2196
f"""ddddtttttttttttdddd	chr7:26230121-26230402(-)$1	281	206	229	16.6718
ggggyyyyyyyyyyyyyyyyggg	chr3:48754018-48754254(-)$1	236	200	223	17.4110
ffff[bbyyyyyyyyyyyyyyyy	chr11:65272445-65272652(+)$1	207	18	41	16.0437
d[bb[cccyyyyyyyyyyyyyyy	chr11:2695175-2695399(-)$1	224	162	185	15.4277
ccc::cccuuuuuuuuuuuuccc	chr12:9233944-9234207(-)$1	263	167	190	16.1614

#otherMatches

#Seq PSSM
UGUUGUAGCUUUUUUUUUUUUUA	chr11:65271594-65271816(+)$1	222	176	199	16.4583
UCAAGAACUGUAAUGCUGGGUGG	chr11:65273160-65273382(+)$1	222	143	166	9.6805
aacauauuaggcuguuaaaaugu	chr8:121816283-121816587(-)$1	304	18	41	12.0491
UUGUAUUCUAUUAUUCUUGCUCG	chrX:132979402-132979647(-)$1	245	182	205	10.3560
CUGUCUCUACAUUUAAAUAGACG	chr14:23793866-23794079(+)$1	213	177	200	18.0867
UUUGAGCUUUUACAAACCAGCUU	chr5:27481714-27481967(+)$1	253	105	128	12.7504
CUCCAAAUAACAGUGAACUCCUU	chrX:132718293-132718583(-)$1	290	183	206	13.1266
AUUCACCAGUGGACAAAAUGAGG	chr11:65272424-65272644(+)$1	220	36	59	14.1903
AUCAAUGACUUAGGUUUCUCUUU	chrX:133038621-133038915(-)$1	294	94	117	13.4727
AACUUGCAUCUGCAGUAUUGCAU	chr11:65270568-65270801(+)$1	233	102	125	14.4069
ACAAAGGAGAAAUAUUUGUAUCC	chrX:133019010-133019282(-)$1	272	221	244	18.2333
UUCUGAGGGAGCCCAAGGCCUUA	chrX:132979447-132979702(-)$1	255	123	146	13.8273
ACAGUAAAUAAUAUUAACUUGCU	chr8:17764917-17765169(-)$1	252	143	166	17.5248
UAUGGACUUCCUCCCAUUUUCUC	chrX:132954608-132954905(-)$1	297	200	223	13.8352
CAUGGUUACCGUUCUCUCCAUCA	chr3:30734709-30734974(+)$1	265	8	31	16.4739
GCUUCUUCUCUCCUAAUAUAAAG	chr20:30269788-30270054(-)$1	266	172	195	16.5989
GAGGGAAUCUACACACUUAACCU	chr3:48754004-48754218(-)$1	214	164	187	17.4110
GGCUAGGAAAAUCAAAACUCCAG	chr2:42397674-42397941(+)$1	267	13	36	15.7076
ACCACAUUUCUAAAGCAUAGUGU	chr2:198284105-198284401(-)$1	296	253	276	14.6634
CUUUUAUAUAAAAUUGAGAGUAA	chr11:2719371-2719609(-)$1	238	20	43	18.6147
AGGGAGAGAGGAGAAAGCACUUC	chr3:30726752-30727017(+)$1	265	120	143	16.4739
AAAAACUGUCACAUAUUUCAGUU	chr6:119610903-119611175(-)$1	272	74	97	12.0651
ugcaaaaugggcauaaaaauugc	chrX:133082985-133083239(-)$1	254	146	169	17.6443
gguugggccuugcucucuggcaa	chr12:9234979-9235258(-)$1	279	235	258	10.1113
AACUUGCAUCUGCAGUAUUGCAU	chr11:65270601-65270813(+)$1	212	69	92	14.4069
AGCAGAGACCACCGAAGACUGCA	chr3:133478021-133478227(+)$1	206	115	138	14.1940
UGGAGUCUCUACAUUAUUAGGCU	chrX:153628243-153628492(+)$1	249	69	92	14.8935
UUUUGGCUGAACCAUCAGAGCCA	chr14:23448929-23449206(-)$1	277	143	166	14.5476
GCUUUAGGGAAUACAUAUUUGGA	chr3:171777675-171777972(+)$1	297	96	119	9.8456
UUUUAAUAGCUUAAGAUUUUAAG	chr11:65266546-65266775(+)$1	229	137	160	18.0867
UCAAGAACUGUAAUGCUGGGUGG	chr11:65273123-65273347(+)$1	224	180	203	9.6805
CCUUCAUGUGAUAAAGGUGGUGG	chr20:42088156-42088431(+)$1	275	238	261	18.6147
AACCUGAAAUAGAAAAGUUCAUG	chr3:171860334-171860630(+)$1	296	53	76	9.4118
ggucaggagaucgagaccauccu	chr3:186336687-186336933(+)$1	246	182	205	15.2196
GCUUACUCUAUACACCAAUGAGU	chr7:26230121-26230402(-)$1	281	206	229	16.6718
GAGGGAAUCUACACACUUAACCU	chr3:48754018-48754254(-)$1	236	200	223	17.4110
CACCAGUGGACAAAAUGAGGAAA	chr11:65272445-65272652(+)$1	207	18	41	16.0437
ACGGAGGGCCCUCCCCCCACCCC	chr11:2695175-2695399(-)$1	224	162	185	15.4277
cuUUAUUCUGAAUUUUAAUUGAA	chr12:9233944-9234207(-)$1	263	167	190	16.1614

#DB
)))(((((............)))	chr11:65271594-65271816(+)$1	1	176	199	16.4583
((....(((.........)))..	chr11:65273160-65273382(+)$1	1	143	166	9.6805
((((((((..........)))))	chr8:121816283-121816587(-)$1	1	18	41	12.0491
(.................))).)	chrX:132979402-132979647(-)$1	1	182	205	10.3560
((((((............)))))	chr14:23793866-23794079(+)$1	1	177	200	18.0867
..((((((..........)))))	chr5:27481714-27481967(+)$1	1	105	128	12.7504
((((((...............))	chrX:132718293-132718583(-)$1	1	183	206	13.1266
.(((..((..........))..)	chr11:65272424-65272644(+)$1	1	36	59	14.1903
.((((.((..........)).))	chrX:133038621-133038915(-)$1	1	94	117	13.4727
(((.((((..........)))).	chr11:65270568-65270801(+)$1	1	102	125	14.4069
(((..(((............)))	chrX:133019010-133019282(-)$1	1	221	244	18.2333
.(((((((..........)))))	chrX:132979447-132979702(-)$1	1	123	146	13.8273
(((((((...........)))))	chr8:17764917-17765169(-)$1	1	143	166	17.5248
..((((...............))	chrX:132954608-132954905(-)$1	1	200	223	13.8352
((((((.............))))	chr3:30734709-30734974(+)$1	1	8	31	16.4739
((((................)))	chr20:30269788-30270054(-)$1	1	172	195	16.5989
((((................)))	chr3:48754004-48754218(-)$1	1	164	187	17.4110
((((.(((..........))).)	chr2:42397674-42397941(+)$1	1	13	36	15.7076
))((((((..........)))))	chr2:198284105-198284401(-)$1	1	253	276	14.6634
(((((((............))))	chr11:2719371-2719609(-)$1	1	20	43	18.6147
((((((.............))))	chr3:30726752-30727017(+)$1	1	120	143	16.4739
)..(((((..........)))))	chr6:119610903-119611175(-)$1	1	74	97	12.0651
(((((..............))))	chrX:133082985-133083239(-)$1	1	146	169	17.6443
((((..(((.........)))..	chr12:9234979-9235258(-)$1	1	235	258	10.1113
(((.((((..........)))).	chr11:65270601-65270813(+)$1	1	69	92	14.4069
(((((.............))))(	chr3:133478021-133478227(+)$1	1	115	138	14.1940
..((((((..........)))))	chrX:153628243-153628492(+)$1	1	69	92	14.8935
((((((((..........)))))	chr14:23448929-23449206(-)$1	1	143	166	14.5476
(.((((((.........))))))	chr3:171777675-171777972(+)$1	1	96	119	9.8456
((((((............)))))	chr11:65266546-65266775(+)$1	1	137	160	18.0867
((....(((.........)))..	chr11:65273123-65273347(+)$1	1	180	203	9.6805
(((((((............))))	chr20:42088156-42088431(+)$1	1	238	261	18.6147
(((.((((.........)))).)	chr3:171860334-171860630(+)$1	1	53	76	9.4118
((((((((...........))))	chr3:186336687-186336933(+)$1	1	182	205	15.2196
(...((((...........))))	chr7:26230121-26230402(-)$1	1	206	229	16.6718
((((................)))	chr3:48754018-48754254(-)$1	1	200	223	17.4110
((((.((................	chr11:65272445-65272652(+)$1	1	18	41	16.0437
(.((.(((...............	chr11:2695175-2695399(-)$1	1	162	185	15.4277
)))..(((............)))	chr12:9233944-9234207(-)$1	1	167	190	16.1614

#PSSM
f : 0.25	h : 0.12	c : 0.12	e : 0.10	g : 0.10	! : 0.07	: : 0.05	F : 0.02	[ : 0.02	a : 0.02	G : 0.02	= : 0.02	d : 0.02	
f : 0.25	h : 0.12	g : 0.12	e : 0.10	c : 0.07	: : 0.05	d : 0.05	! : 0.05	[ : 0.05	F : 0.02	z : 0.02	= : 0.02	" : 0.02	
f : 0.35	g : 0.12	h : 0.07	c : 0.07	d : 0.07	e : 0.07	# : 0.05	F : 0.02	z : 0.02	: : 0.02	= : 0.02	" : 0.02	b : 0.02	
f : 0.30	g : 0.12	e : 0.10	h : 0.07	d : 0.07	[ : 0.07	# : 0.05	z : 0.02	c : 0.02	! : 0.02	= : 0.02	" : 0.02	b : 0.02	: : 0.02	
f : 0.25	d : 0.17	h : 0.07	! : 0.07	g : 0.07	y : 0.07	[ : 0.07	e : 0.05	# : 0.05	z : 0.02	= : 0.02	: : 0.02	
f : 0.23	d : 0.12	c : 0.10	h : 0.07	g : 0.07	y : 0.07	e : 0.05	# : 0.05	! : 0.05	z : 0.02	[ : 0.02	w : 0.02	v : 0.02	= : 0.02	b : 0.02	
c : 0.17	f : 0.12	d : 0.10	b : 0.07	g : 0.07	v : 0.07	y : 0.07	e : 0.05	h : 0.05	u : 0.05	x : 0.05	z : 0.02	w : 0.02	= : 0.02	
c : 0.17	u : 0.10	f : 0.10	d : 0.10	y : 0.10	v : 0.07	e : 0.05	h : 0.05	x : 0.05	b : 0.05	z : 0.02	g : 0.02	t : 0.02	w : 0.02	= : 0.02	
s : 0.30	u : 0.17	y : 0.12	c : 0.07	t : 0.07	v : 0.07	x : 0.05	r : 0.05	z : 0.02	w : 0.02	
s : 0.30	u : 0.17	r : 0.12	y : 0.12	t : 0.07	v : 0.07	x : 0.05	z : 0.02	w : 0.02	
s : 0.30	u : 0.17	r : 0.12	y : 0.12	t : 0.07	v : 0.07	x : 0.05	z : 0.02	w : 0.02	
s : 0.30	u : 0.17	r : 0.12	y : 0.12	t : 0.07	v : 0.07	x : 0.05	z : 0.02	w : 0.02	
s : 0.30	u : 0.17	r : 0.12	y : 0.12	t : 0.07	v : 0.07	x : 0.05	z : 0.02	w : 0.02	
s : 0.30	u : 0.17	r : 0.12	y : 0.12	t : 0.07	v : 0.07	x : 0.05	z : 0.02	w : 0.02	
s : 0.30	u : 0.17	r : 0.12	y : 0.12	t : 0.07	v : 0.07	x : 0.05	z : 0.02	w : 0.02	
s : 0.30	u : 0.17	r : 0.12	y : 0.12	t : 0.07	v : 0.07	x : 0.05	z : 0.02	w : 0.02	
s : 0.30	u : 0.17	r : 0.12	y : 0.12	t : 0.07	v : 0.07	x : 0.05	z : 0.02	w : 0.02	
s : 0.30	u : 0.17	y : 0.12	r : 0.07	t : 0.07	v : 0.07	x : 0.05	z : 0.02	w : 0.02	f : 0.02	d : 0.02	
f : 0.17	u : 0.12	c : 0.12	y : 0.12	d : 0.10	x : 0.05	b : 0.05	v : 0.05	t : 0.05	h : 0.02	g : 0.02	e : 0.02	w : 0.02	= : 0.02	
f : 0.25	c : 0.12	d : 0.12	y : 0.12	u : 0.07	g : 0.07	h : 0.05	x : 0.05	b : 0.05	e : 0.02	= : 0.02	
f : 0.25	c : 0.17	d : 0.12	g : 0.12	e : 0.07	h : 0.05	x : 0.05	y : 0.05	2 : 0.02	] : 0.02	= : 0.02	
f : 0.25	d : 0.15	g : 0.12	2 : 0.10	e : 0.07	h : 0.07	] : 0.07	c : 0.05	y : 0.05	= : 0.02	
f : 0.28	c : 0.15	g : 0.12	e : 0.07	2 : 0.07	h : 0.07	d : 0.07	] : 0.05	y : 0.05	= : 0.02	

#score	574.3809056093589
#seq	39
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_UTR_m3_run2.txt

#BEAR
EEEE}A}A}CCC}CCCYYEEEEE}DD	chr4:763959-764201(-)$1	242	214	240	12.5510
::DDDDFFFFFF}BB~~~~CCC}CCC	chr16:20693536-20693802(+)$1	266	220	246	15.1814
::::BB}JJJJJJJJJJJ______CC	chr15:44063547-44063803(+)$1	256	88	114	11.0162
DDDDYYIIIIIIIII~~~~EEEEE}F	chr8:97243073-97243372(-)$1	299	262	288	13.7637
:::DDDDCCC}FFFFFFYYCCC}DDD	chr1:241793396-241793627(-)$1	231	157	183	13.3314
/CCCFFFFFF}FFFFFFYYDDDD}CC	chr10:120795370-120795639(-)$1	269	241	267	14.3057
:BBZZZFFFFFFZZZFFFFFFYYBB}	chrX:106310310-106310558(-)$1	248	205	231	12.5334
:CCCYYA}EEEEEEEEEE}CCC}EEE	chr21:39469409-39469652(-)$1	243	120	146	14.1817
::::FFFFFF}DDDD}DDDDZZZEEE	chr1:241796878-241797149(-)$1	271	98	124	11.6149

#otherMatches

#Seq PSSM
CCUGAGUGGUCCAUCCAAUACCCACA	chr4:763959-764201(-)$1	242	214	240	12.5510
CAGGAUGGUCGCAGGAAUGAAGAUGA	chr16:20693536-20693802(+)$1	266	220	246	15.1814
AUUUGUGUUGGGGGAAAUGUUGUGGG	chr15:44063547-44063803(+)$1	256	88	114	11.0162
UGUUAAAUUUUUUUCCAAACUUUCAA	chr8:97243073-97243372(-)$1	299	262	288	13.7637
acuccuaguaucuauuucaccaucua	chr1:241793396-241793627(-)$1	231	157	183	13.3314
AGAUUGAUCAUGCACCAUAUCCACAG	chr10:120795370-120795639(-)$1	269	241	267	14.3057
AGCCCAUUUGCCAUAUUUCAUCCACC	chrX:106310310-106310558(-)$1	248	205	231	12.5334
GAGUUACAAUGAUUAACGAAUUGCAU	chr21:39469409-39469652(-)$1	243	120	146	14.1817
AGAAUUUUCUCAUUUAAAGGACAGUU	chr1:241796878-241797149(-)$1	271	98	124	11.6149

#DB
)))).).).))).)))..))))).))	chr4:763959-764201(-)$1	1	214	240	12.5510
..)))))))))).))....))).)))	chr16:20693536-20693802(+)$1	1	220	246	15.1814
....)).)))))))))))......))	chr15:44063547-44063803(+)$1	1	88	114	11.0162
))))..)))))))))....))))).)	chr8:97243073-97243372(-)$1	1	262	288	13.7637
...))))))).))))))..))).)))	chr1:241793396-241793627(-)$1	1	157	183	13.3314
.))))))))).))))))..)))).))	chr10:120795370-120795639(-)$1	1	241	267	14.3057
.))...))))))...))))))..)).	chrX:106310310-106310558(-)$1	1	205	231	12.5334
.)))..).)))))))))).))).)))	chr21:39469409-39469652(-)$1	1	120	146	14.1817
....)))))).)))).))))...)))	chr1:241796878-241797149(-)$1	1	98	124	11.6149

#PSSM
: : 0.66	E : 0.11	D : 0.11	/ : 0.11	
: : 0.44	C : 0.22	E : 0.11	D : 0.11	B : 0.11	
: : 0.33	D : 0.22	C : 0.22	E : 0.11	B : 0.11	
D : 0.33	: : 0.22	C : 0.22	E : 0.11	Z : 0.11	
D : 0.22	Y : 0.22	F : 0.22	} : 0.11	B : 0.11	Z : 0.11	
D : 0.22	Y : 0.22	F : 0.22	A : 0.11	B : 0.11	Z : 0.11	
F : 0.44	} : 0.22	I : 0.11	D : 0.11	A : 0.11	
F : 0.44	A : 0.11	J : 0.11	I : 0.11	C : 0.11	} : 0.11	
F : 0.44	} : 0.11	J : 0.11	I : 0.11	C : 0.11	E : 0.11	
F : 0.44	C : 0.22	J : 0.11	I : 0.11	E : 0.11	
} : 0.33	F : 0.22	C : 0.11	J : 0.11	I : 0.11	E : 0.11	
F : 0.44	C : 0.11	J : 0.11	I : 0.11	E : 0.11	D : 0.11	
} : 0.22	F : 0.22	J : 0.11	I : 0.11	Z : 0.11	E : 0.11	D : 0.11	
F : 0.22	C : 0.11	B : 0.11	J : 0.11	I : 0.11	Z : 0.11	E : 0.11	D : 0.11	
F : 0.22	C : 0.11	B : 0.11	J : 0.11	I : 0.11	Z : 0.11	E : 0.11	D : 0.11	
F : 0.33	~ : 0.22	C : 0.11	J : 0.11	E : 0.11	} : 0.11	
F : 0.33	~ : 0.22	Y : 0.11	J : 0.11	E : 0.11	D : 0.11	
Y : 0.33	~ : 0.22	J : 0.11	F : 0.11	E : 0.11	D : 0.11	
~ : 0.22	Y : 0.22	E : 0.11	_ : 0.11	F : 0.11	} : 0.11	D : 0.11	
C : 0.33	E : 0.22	D : 0.22	_ : 0.11	F : 0.11	
C : 0.33	E : 0.22	_ : 0.11	D : 0.11	F : 0.11	Z : 0.11	
C : 0.33	E : 0.22	_ : 0.11	D : 0.11	Y : 0.11	Z : 0.11	
} : 0.33	E : 0.22	_ : 0.11	D : 0.11	Y : 0.11	Z : 0.11	
E : 0.33	} : 0.22	C : 0.11	_ : 0.11	D : 0.11	B : 0.11	
C : 0.33	D : 0.22	E : 0.22	} : 0.11	B : 0.11	
C : 0.33	D : 0.22	E : 0.22	F : 0.11	} : 0.11	

#score	118.47990742701114
#seq	9
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_transcript_m2_run2.txt

#BEAR
==========[eeeeennnnneeeee]=========	chr3:25667994-25668255(-)$1	261	207	243	13.5956
:ccc[eeeee[ddddoooooodddd333eeeee]cc	chr19:28935977-28936254(-)$1	277	72	108	13.8218
eeeegggggggbbrrrrrrrrrbb]ggggggg22ee	chr1:219372706-219372941(+)$1	235	126	162	11.3024
b[ccc"""ccc[cccnnnnnccc]ccc333ccc]bb	chr9:96435313-96435634(+)$1	321	141	177	11.7180
ddd[bb!!bb[ddddoooooodddd]bb22bb]ddd	chr11:31514918-31515265(-)$1	347	178	214	12.5375
dddbb[dddd!!cccooooooccc22dddd]bb]dd	chrX:153912991-153913294(-)$1	303	216	252	12.7389
::=============oooooo=============::	chr18:1287372-1287659(-)$1	287	243	279	16.4245
cccccc"""ccc[aqqqqqqqqaccc333ccc]ccc	chr3:160143809-160144057(+)$1	248	116	152	11.1020
e"""ccc####ddddoooooodddd333ccc]eeee	chr10:119043418-119043721(-)$1	303	47	83	15.5543
ddd####bb!!ddddoooooodddd22bb4444ddd	chr1:231173914-231174205(-)$1	291	34	70	13.9520
ddd[dddd!!eeeeeooooooeeeee4444dddd]d	chr22:48162717-48163010(+)$1	293	237	273	13.5414
bb[accc[a[bb[bboooooobb]bb]a]ccc]a]b	chr11:65268095-65268300(+)$1	205	50	86	14.8667
bb[accc[a[bb[bboooooobb]bb]a]ccc]a]b	chr11:65268100-65268307(+)$1	207	45	81	14.8667
cc!!==========qqqqqqqq==========22cc	chr20:44987624-44987937(-)$1	313	17	53	14.4330
:ccc!!iiiiiiiiiqqqqqqqqiiiiiiiii22cc	chr7:157032327-157032617(+)$1	290	123	159	11.9682
iiiiiiiii"""cccpppppppccc333iiiiiiii	chr8:6577861-6578120(+)$1	259	141	177	12.1980
=======[ddddcccooooooccc333dddd]====	chr12:133393450-133393791(-)$1	341	198	234	15.8812
==========eeeeeooooooeeeeea[gggggggc	chr16:31199299-31199548(+)$1	249	171	207	16.0979
=========ffffffooooooffffff666666===	chr22:20912911-20913178(+)$1	267	24	60	12.8385
bdddd[dddd"""bboooooobb333dddd4444dd	chr1:29506014-29506307(-)$1	293	179	215	14.0136
fff!!bb####ddddoooooodddd22bb22fffff	chr19:28980651-28980900(-)$1	249	98	134	12.6226
dd[ggggggg"""bboooooobb]gggggggdddd]	chr21:38472668-38472947(+)$1	279	113	149	15.5210
!=============apppppppa]============	chr1:214813814-214814104(+)$1	290	179	215	13.8447
"""ggggggg[ddddmmmmdddd]ggggggg333bb	chr2:170493659-170493936(+)$1	277	211	247	11.2405
ggggg!!bb[eeeeeooooooeeeee]bb4444ggg	chr2:168739713-168739974(-)$1	261	178	214	14.6697
!eeeeegggggggooooooggggggg]eeeee22dd	chr10:6205962-6206286(+)$1	324	174	210	12.0388
::::===========oooooo===========a[ee	chr11:65267477-65267688(+)$1	211	23	59	15.4786
##ccc[dddd!!cccooooooccc]ddddccc4444	chr6:157734469-157734746(-)$1	277	57	93	14.7884
dddd"""ffffffbboooooobb]ffffff]dddd]	chr9:133482986-133483276(+)$1	290	130	166	12.8055
###ccc[ccceeeeeooooooeeeee]ccc]cccii	chr4:761607-761876(-)$1	269	43	79	15.1903
cc[============oooooo============]cc	chr17:40426767-40427056(-)$1	289	214	250	19.7108
''eeeee!!ffffffooooooffffff4444eeeee	chr5:131639067-131639343(+)$1	276	11	47	12.5957
ee[eeeee[ccc[bboooooobb333ccc]eeeeee	chr1:220439772-220440045(-)$1	273	125	161	14.2116
::gggggggffffffooooooffffff]gggggggd	chr10:6217243-6217565(+)$1	322	165	201	13.0962
#a!!===========oooooo===========22a4	chr11:65267469-65267677(+)$1	208	31	67	20.2647
b!!ccc####eeeeeooooooeeeee333ccc22bb	chr11:65267995-65268201(+)$1	206	4	40	15.8199
b]ccc==========nnnnn==========hhhhhh	chr9:136137595-136137854(-)$1	259	64	100	13.2937
#a!!===========oooooo===========22a4	chr11:65267418-65267633(+)$1	215	82	118	20.2647
ffffffiiiiiiiiiooooooiiiiiiiii]fffff	chr1:193186116-193186399(+)$1	283	193	229	15.5915
:::a[==========oooooo==========]a:::	chr5:145866974-145867287(+)$1	313	7	43	14.1336
ee!!===========rrrrrrrrr===========e	chr7:119526059-119526342(-)$1	283	72	108	15.3927
!ccc!!bb[ccc[aooooooa]cccbb22ccc]ccc	chr19:34876804-34877047(+)$1	243	112	148	13.6766
2bb:gggggggddddoooooodddd333gggggggH	chr20:33615128-33615437(-)$1	309	222	258	13.3734
eeee[==========oooooo==========]eeee	chr3:195419160-195419427(+)$1	267	136	172	18.1825
ccccc[ccc####bboooooobb4444ccc]ccc44	chr11:3413036-3413325(+)$1	289	91	127	15.5220
#a!!===========oooooo===========22a4	chr11:65267433-65267637(+)$1	204	67	103	20.2647
####iiiiiiiiirrrrrrrrriiiiiiiii333gg	chr19:21631113-21631400(-)$1	287	65	101	15.0485
bb!!ggggggg!!bboooooobb22gggggggbbdd	chr2:152320878-152321116(+)$1	238	29	65	15.1327
cc:gggggggeeeeeooooooeeeee]ggggggg::	chr1:213355412-213355689(+)$1	277	133	169	12.8734
""eeeee[bb!!cccooooooccc22bbeeeeeddd	chr18:75695132-75695361(-)$1	229	16	52	13.5682
#a!!===========oooooo===========22a4	chr11:65267465-65267669(+)$1	204	35	71	20.2647

#otherMatches

#Seq PSSM
GAGUAAUAUUUAAAAACCUCAUUUUUUAAUGUUAUU	chr3:25667994-25668255(-)$1	261	207	243	13.5956
agaaucuucuugggucuagauacccccuagaaguuu	chr19:28935977-28936254(-)$1	277	72	108	13.8218
ggagugcaguggcaagaucucggcucacugcaaccu	chr1:219372706-219372941(+)$1	235	126	162	11.3024
GGCACAGGGUGGACCGAGGGGGUACACAGAGUGGCU	chr9:96435313-96435634(+)$1	321	141	177	11.7180
gggcugggguggaaugauaugguuugauuacgcccc	chr11:31514918-31515265(-)$1	347	178	214	12.5375
cuuacaagcagGUUAGUAUAAUAAAAUGUUAGUGGA	chrX:153912991-153913294(-)$1	303	216	252	12.7389
uacaaaguuggggagcucacauuucccaauuuugaa	chr18:1287372-1287659(-)$1	287	243	279	16.4245
CUACAGCCCCUGACAAAAAAAAGCAGAAAUUGCUAG	chr3:160143809-160144057(+)$1	248	116	152	11.1020
GUAAGAAAAAAGUUUGGACUAAAGCAGCUUCCCAGU	chr10:119043418-119043721(-)$1	303	47	83	15.5543
UAGAAAAACCUCGGGGCCGCUCCUGUUGUGAAGCUG	chr1:231173914-231174205(-)$1	291	34	70	13.9520
gcaccucacacauccuccccugggugcuucugagcu	chr22:48162717-48163010(+)$1	293	237	273	13.5414
CCACACGGAGGAGGCGAGCAGGCGUUGUGCGUAGAG	chr11:65268095-65268300(+)$1	205	50	86	14.8667
CCACACGGAGGAGGCGAGCAGGCGUUGUGCGUAGAG	chr11:65268100-65268307(+)$1	207	45	81	14.8667
cugauucaggggauggggugggguucccugaagaag	chr20:44987624-44987937(-)$1	313	17	53	14.4330
gagGAACCACACCCUGCAAAGUGAGGGUGUGGGGUC	chr7:157032327-157032617(+)$1	290	123	159	11.9682
CCAUGUUUGUAAUGUUGACCACACAAGUUGAAUGUG	chr8:6577861-6578120(+)$1	259	141	177	12.1980
GGGCCUUAUCCUGGCCACCCCGCCUGUGGGACGGGG	chr12:133393450-133393791(-)$1	341	198	234	15.8812
CUGGGCAGGCGACCCAGGAAAGGGUUUGGAGUGAGG	chr16:31199299-31199548(+)$1	249	171	207	16.0979
CAGCAGUUGGGGAGGCUUUGUCCUCCUGAGCCUCAG	chr22:20912911-20913178(+)$1	267	24	60	12.8385
gccugcaaucccagcugaagugugaagauuacuuca	chr1:29506014-29506307(-)$1	293	179	215	14.0136
UGGAAACCGCAGCAUUUCAACAUGCCAGUGCCCAAG	chr19:28980651-28980900(-)$1	249	98	134	12.6226
GGUGAGGUAUAUAUGGGGAAACAGAUGCUUCCUUCU	chr21:38472668-38472947(+)$1	279	113	149	15.5210
UGCUUCUCUGGUGACAAAUGAAGAUCAUCAGAGAAG	chr1:214813814-214814104(+)$1	290	179	215	13.8447
AAAGUCCUCCAUGUUGAAAAAUAAGGAGGAUGAGAA	chr2:170493659-170493936(+)$1	277	211	247	11.2405
uuugauuuuacauuggaaaaucagugaaauguuuua	chr2:168739713-168739974(-)$1	261	178	214	14.6697
ACCCCACCCCGCGCGUGGAUGCGGGGCUGGGGCAGG	chr10:6205962-6206286(+)$1	324	174	210	12.0388
UCAAUUUAAUUUCUGGUGGUGCAGAAGUUAGAAGGU	chr11:65267477-65267688(+)$1	211	23	59	15.4786
UGCACACUGGGACACUGUGAUGUGGCUAGGUGAGAG	chr6:157734469-157734746(-)$1	277	57	93	14.7884
AAGGGAAUGAAACUGCAAUCACAUGUUUCAGCCUUG	chr9:133482986-133483276(+)$1	290	130	166	12.8055
UACAAUGAUAUUCAGUUUCAUCUGAACUGUGAUUUA	chr4:761607-761876(-)$1	269	43	79	15.1903
UAAUUUUGUUAUCUUUCAAUUAAGGUAAUAGAACUG	chr17:40426767-40427056(-)$1	289	214	250	19.7108
agugaagucuaugauauuugagucauaacuccuuca	chr5:131639067-131639343(+)$1	276	11	47	12.5957
UUACUGAGCAGGUGUGCCUUAACCUCCCUACUCAGA	chr1:220439772-220440045(-)$1	273	125	161	14.2116
CAgugcuguugucauccccguaugacagauggcaca	chr10:6217243-6217565(+)$1	322	165	201	13.0962
UCAAUUUAAUUUCUGGUGGUGCAGAAGUUAGAAGGU	chr11:65267469-65267677(+)$1	208	31	67	20.2647
GAGUCCAGGAGCCAGUGCGAUUUGGUGAAGGAAGCU	chr11:65267995-65268201(+)$1	206	4	40	15.8199
CGCCUCCCUCUUCUCUGAGUGGGAGGAGGGCCAGAU	chr9:136137595-136137854(-)$1	259	64	100	13.2937
UCAAUUUAAUUUCUGGUGGUGCAGAAGUUAGAAGGU	chr11:65267418-65267633(+)$1	215	82	118	20.2647
gggcaggcuguggagcucagacuccacggcauuguc	chr1:193186116-193186399(+)$1	283	193	229	15.5915
auacgagugacauucaaaacagaaugucacuggaag	chr5:145866974-145867287(+)$1	313	7	43	14.1336
cucaggcuuagaagggaaauauaguuuucugagcca	chr7:119526059-119526342(-)$1	283	72	108	15.3927
GGGUAAGCACAGGUAGGCAAAGCUGGCCCACCAGGU	chr19:34876804-34877047(+)$1	243	112	148	13.6766
aggauuguauaccaugaccaaauggauuuaugcaag	chr20:33615128-33615437(-)$1	309	222	258	13.3734
GGGUGCCAGGCAUGGUUGGCUCUGUGCCUGGAAUUC	chr3:195419160-195419427(+)$1	267	136	172	18.1825
GUAGUUCUGACAAGCUCAAUUGCCUUAUAGUGCUUU	chr11:3413036-3413325(+)$1	289	91	127	15.5220
UCAAUUUAAUUUCUGGUGGUGCAGAAGUUAGAAGGU	chr11:65267433-65267637(+)$1	204	67	103	20.2647
AAAGUAGUUUAGUAUGUUUUUAACUAAACUAAAGGU	chr19:21631113-21631400(-)$1	287	65	101	15.0485
GUAAUACUGUAAUAUGUCAGGAUUCUACAGUAACUU	chr2:152320878-152321116(+)$1	238	29	65	15.1327
cuauauagguugggugcaguggcucacaucuguaau	chr1:213355412-213355689(+)$1	277	133	169	12.8734
AAUGCAGAGGGAGUCACAGCGGACAGUCCUGCAUCC	chr18:75695132-75695361(-)$1	229	16	52	13.5682
UCAAUUUAAUUUCUGGUGGUGCAGAAGUUAGAAGGU	chr11:65267465-65267669(+)$1	204	35	71	20.2647

#DB
((((((((((.(((((.....))))).)))))))))	chr3:25667994-25668255(-)$1	1	207	243	13.5956
.(((.(((((.((((......))))...))))).))	chr19:28935977-28936254(-)$1	1	72	108	13.8218
(((((((((((((.........)).)))))))..))	chr1:219372706-219372941(+)$1	1	126	162	11.3024
(.(((...(((.(((.....))).)))...))).))	chr9:96435313-96435634(+)$1	1	141	177	11.7180
(((.((..((.((((......)))).))..)).)))	chr11:31514918-31515265(-)$1	1	178	214	12.5375
(((((.((((..(((......)))..)))).)).))	chrX:153912991-153913294(-)$1	1	216	252	12.7389
..(((((((((((((......)))))))))))))..	chr18:1287372-1287659(-)$1	1	243	279	16.4245
((((((...(((.(........))))...))).)))	chr3:160143809-160144057(+)$1	1	116	152	11.1020
(...(((....((((......))))...))).))))	chr10:119043418-119043721(-)$1	1	47	83	15.5543
(((....((..((((......))))..))....)))	chr1:231173914-231174205(-)$1	1	34	70	13.9520
(((.((((..(((((......)))))....)))).)	chr22:48162717-48163010(+)$1	1	237	273	13.5414
((.((((.(.((.((......)).)).).))).).)	chr11:65268095-65268300(+)$1	1	50	86	14.8667
((.((((.(.((.((......)).)).).))).).)	chr11:65268100-65268307(+)$1	1	45	81	14.8667
((..((((((((((........))))))))))..))	chr20:44987624-44987937(-)$1	1	17	53	14.4330
.(((..(((((((((........)))))))))..))	chr7:157032327-157032617(+)$1	1	123	159	11.9682
(((((((((...(((.......)))...))))))))	chr8:6577861-6578120(+)$1	1	141	177	12.1980
(((((((.(((((((......)))...)))).))))	chr12:133393450-133393791(-)$1	1	198	234	15.8812
))))))))))(((((......)))))(.((((((((	chr16:31199299-31199548(+)$1	1	171	207	16.0979
(((((((((((((((......))))))......)))	chr22:20912911-20913178(+)$1	1	24	60	12.8385
(((((.((((...((......))...))))....))	chr1:29506014-29506307(-)$1	1	179	215	14.0136
(((..((....((((......))))..))..)))))	chr19:28980651-28980900(-)$1	1	98	134	12.6226
((.(((((((...((......)).))))))))))).	chr21:38472668-38472947(+)$1	1	113	149	15.5210
.((((((((((((((.......).))))))))))))	chr1:214813814-214814104(+)$1	1	179	215	13.8447
...(((((((.((((....)))).)))))))...))	chr2:170493659-170493936(+)$1	1	211	247	11.2405
(((((..((.(((((......))))).))....)))	chr2:168739713-168739974(-)$1	1	178	214	14.6697
.((((((((((((......))))))).)))))..))	chr10:6205962-6206286(+)$1	1	174	210	12.0388
....(((((((((((......)))))))))))(.((	chr11:65267477-65267688(+)$1	1	23	59	15.4786
..(((.((((..(((......))).)))))))....	chr6:157734469-157734746(-)$1	1	57	93	14.7884
((((...((((((((......)).)))))).)))).	chr9:133482986-133483276(+)$1	1	130	166	12.8055
...(((.((((((((......))))).))).)))))	chr4:761607-761876(-)$1	1	43	79	15.1903
((.((((((((((((......)))))))))))).))	chr17:40426767-40427056(-)$1	1	214	250	19.7108
..(((((..((((((......))))))....)))))	chr5:131639067-131639343(+)$1	1	11	47	12.5957
((.(((((.(((.((......))...))).))))))	chr1:220439772-220440045(-)$1	1	125	161	14.2116
..(((((((((((((......)))))).)))))))(	chr10:6217243-6217565(+)$1	1	165	201	13.0962
.(..(((((((((((......)))))))))))..).	chr11:65267469-65267677(+)$1	1	31	67	20.2647
(..(((....(((((......)))))...)))..))	chr11:65267995-65268201(+)$1	1	4	40	15.8199
).)))((((((((((.....))))))))))((((((	chr9:136137595-136137854(-)$1	1	64	100	13.2937
.(..(((((((((((......)))))))))))..).	chr11:65267418-65267633(+)$1	1	82	118	20.2647
(((((((((((((((......))))))))).)))))	chr1:193186116-193186399(+)$1	1	193	229	15.5915
...(.((((((((((......)))))))))).)...	chr5:145866974-145867287(+)$1	1	7	43	14.1336
((..(((((((((((.........))))))))))))	chr7:119526059-119526342(-)$1	1	72	108	15.3927
.(((..((.(((.(......).)))))..))).)))	chr19:34876804-34877047(+)$1	1	112	148	13.6766
.)).(((((((((((......))))...))))))))	chr20:33615128-33615437(-)$1	1	222	258	13.3734
((((.((((((((((......)))))))))).))))	chr3:195419160-195419427(+)$1	1	136	172	18.1825
(((((.(((....((......))....))).)))..	chr11:3413036-3413325(+)$1	1	91	127	15.5220
.(..(((((((((((......)))))))))))..).	chr11:65267433-65267637(+)$1	1	67	103	20.2647
....(((((((((.........)))))))))...))	chr19:21631113-21631400(-)$1	1	65	101	15.0485
((..(((((((..((......))..)))))))))))	chr2:152320878-152321116(+)$1	1	29	65	15.1327
)).((((((((((((......))))).)))))))..	chr1:213355412-213355689(+)$1	1	133	169	12.8734
..(((((.((..(((......)))..))))))))))	chr18:75695132-75695361(-)$1	1	16	52	13.5682
.(..(((((((((((......)))))))))))..).	chr11:65267465-65267669(+)$1	1	35	71	20.2647

#PSSM
b : 0.13	# : 0.13	: : 0.11	d : 0.11	e : 0.09	c : 0.09	= : 0.07	! : 0.05	f : 0.03	" : 0.03	i : 0.01	g : 0.01	' : 0.01	2 : 0.01	
c : 0.15	d : 0.13	= : 0.09	e : 0.09	: : 0.07	b : 0.07	a : 0.07	" : 0.05	# : 0.05	f : 0.03	[ : 0.01	i : 0.01	g : 0.01	' : 0.01	! : 0.01	] : 0.01	
c : 0.15	! : 0.15	= : 0.11	d : 0.11	e : 0.09	[ : 0.09	: : 0.05	" : 0.03	f : 0.03	g : 0.03	# : 0.03	i : 0.01	b : 0.01	
c : 0.19	! : 0.15	= : 0.13	e : 0.11	g : 0.09	a : 0.05	[ : 0.03	# : 0.03	d : 0.03	: : 0.03	b : 0.01	" : 0.01	i : 0.01	f : 0.01	
= : 0.27	c : 0.19	g : 0.15	e : 0.07	[ : 0.05	! : 0.05	b : 0.03	d : 0.03	i : 0.03	# : 0.01	" : 0.01	f : 0.01	
= : 0.33	g : 0.13	c : 0.11	e : 0.09	[ : 0.07	! : 0.05	" : 0.03	b : 0.03	i : 0.03	# : 0.01	d : 0.01	f : 0.01	
= : 0.33	g : 0.15	e : 0.07	d : 0.07	c : 0.07	i : 0.07	" : 0.05	! : 0.03	# : 0.03	b : 0.03	[ : 0.01	
= : 0.31	g : 0.15	d : 0.07	[ : 0.07	i : 0.07	# : 0.05	b : 0.05	e : 0.03	" : 0.03	! : 0.03	c : 0.03	f : 0.01	
= : 0.31	g : 0.15	b : 0.07	d : 0.07	i : 0.07	c : 0.05	# : 0.05	! : 0.03	a : 0.03	[ : 0.03	e : 0.01	" : 0.01	f : 0.01	
= : 0.29	g : 0.13	c : 0.09	d : 0.07	# : 0.07	f : 0.07	[ : 0.05	i : 0.05	b : 0.03	! : 0.03	e : 0.01	" : 0.01	
= : 0.25	e : 0.11	[ : 0.07	g : 0.07	c : 0.07	! : 0.07	f : 0.07	# : 0.05	i : 0.05	" : 0.05	b : 0.03	d : 0.01	
= : 0.25	d : 0.15	e : 0.13	! : 0.07	f : 0.07	b : 0.05	c : 0.05	i : 0.05	" : 0.05	[ : 0.01	g : 0.01	# : 0.01	
= : 0.25	e : 0.13	d : 0.13	c : 0.11	[ : 0.09	f : 0.07	i : 0.05	" : 0.03	b : 0.01	g : 0.01	# : 0.01	! : 0.01	
= : 0.25	b : 0.15	e : 0.13	d : 0.13	c : 0.11	f : 0.05	r : 0.03	a : 0.03	i : 0.03	o : 0.01	
= : 0.21	b : 0.15	e : 0.13	d : 0.13	c : 0.11	f : 0.05	r : 0.03	q : 0.03	i : 0.03	o : 0.03	a : 0.01	
o : 0.76	r : 0.05	q : 0.05	n : 0.03	p : 0.03	e : 0.01	m : 0.01	
o : 0.76	n : 0.05	r : 0.05	q : 0.05	p : 0.03	m : 0.01	
o : 0.76	n : 0.05	r : 0.05	q : 0.05	p : 0.03	m : 0.01	
o : 0.76	n : 0.05	r : 0.05	q : 0.05	p : 0.03	m : 0.01	
o : 0.74	n : 0.05	r : 0.05	q : 0.05	p : 0.03	d : 0.01	g : 0.01	
o : 0.72	r : 0.05	q : 0.05	p : 0.03	n : 0.01	c : 0.01	d : 0.01	g : 0.01	= : 0.01	a : 0.01	
= : 0.19	b : 0.15	e : 0.13	d : 0.13	c : 0.09	r : 0.05	q : 0.05	f : 0.05	p : 0.03	g : 0.01	i : 0.01	] : 0.01	
= : 0.21	b : 0.17	e : 0.13	d : 0.13	c : 0.13	f : 0.05	a : 0.03	i : 0.03	q : 0.01	g : 0.01	r : 0.01	
= : 0.21	e : 0.13	] : 0.13	c : 0.13	d : 0.11	i : 0.05	f : 0.05	3 : 0.03	b : 0.01	g : 0.01	r : 0.01	4 : 0.01	2 : 0.01	
= : 0.25	e : 0.13	d : 0.11	c : 0.07	f : 0.07	2 : 0.05	i : 0.05	3 : 0.05	g : 0.05	] : 0.03	b : 0.03	4 : 0.01	
= : 0.25	e : 0.13	3 : 0.13	g : 0.09	2 : 0.07	f : 0.07	b : 0.05	i : 0.05	c : 0.03	] : 0.01	d : 0.01	4 : 0.01	
= : 0.25	] : 0.13	3 : 0.13	g : 0.07	f : 0.07	b : 0.05	d : 0.05	i : 0.05	c : 0.03	2 : 0.03	4 : 0.03	a : 0.01	
= : 0.27	3 : 0.13	g : 0.09	b : 0.09	d : 0.07	i : 0.05	c : 0.05	4 : 0.03	a : 0.03	[ : 0.01	6 : 0.01	e : 0.01	f : 0.01	] : 0.01	2 : 0.01	
= : 0.27	g : 0.15	d : 0.07	c : 0.07	i : 0.07	e : 0.05	3 : 0.05	b : 0.05	2 : 0.03	4 : 0.03	] : 0.03	6 : 0.01	f : 0.01	
= : 0.27	c : 0.17	g : 0.15	4 : 0.07	i : 0.07	e : 0.05	d : 0.05	2 : 0.03	3 : 0.01	6 : 0.01	f : 0.01	] : 0.01	
= : 0.25	g : 0.15	c : 0.15	] : 0.09	e : 0.07	4 : 0.07	i : 0.05	d : 0.03	b : 0.01	6 : 0.01	2 : 0.01	h : 0.01	
= : 0.21	c : 0.17	g : 0.11	e : 0.09	] : 0.07	4 : 0.05	d : 0.05	b : 0.03	i : 0.03	f : 0.03	3 : 0.03	6 : 0.01	h : 0.01	
2 : 0.17	= : 0.11	e : 0.11	] : 0.09	4 : 0.07	g : 0.07	c : 0.05	d : 0.05	b : 0.03	f : 0.03	3 : 0.03	a : 0.03	i : 0.01	6 : 0.01	h : 0.01	
2 : 0.17	= : 0.11	d : 0.11	g : 0.09	] : 0.07	c : 0.07	e : 0.07	a : 0.03	4 : 0.03	f : 0.03	3 : 0.03	i : 0.01	[ : 0.01	h : 0.01	: : 0.01	b : 0.01	
d : 0.17	c : 0.11	e : 0.11	= : 0.09	g : 0.09	a : 0.07	b : 0.05	: : 0.05	] : 0.05	i : 0.03	f : 0.03	4 : 0.03	h : 0.01	
d : 0.17	c : 0.13	e : 0.13	4 : 0.11	b : 0.09	= : 0.07	: : 0.05	i : 0.03	f : 0.03	] : 0.03	g : 0.03	h : 0.01	H : 0.01	

#score	743.9366542343395
#seq	51
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_UTR_m2_run2.txt

#BEAR
i####ffffff!!cccooooooccc22ffffff333ii	chr1:36180971-36181242(-)$1	271	160	198	16.1678
+++ffffff!!eeeeeooooooeeeee4444fffffff	chr17:76794169-76794492(-)$1	323	173	211	12.1197
c!!bb"""dddd[cccoooooocccdddd333bb22cc	chr19:50986421-50986696(+)$1	275	89	127	15.1926
bffffff[a"""ddddoooooodddd333a]ffffff4	chr19:13250209-13250505(+)$1	296	120	158	15.3315
=====%%%%%%eeeeeooooooeeeee4444=======	chr3:196197119-196197357(-)$1	238	58	96	13.0388
heeeee[bb"""eeeeeooooooeeeeebb]eeeee22	chr22:39886606-39886923(+)$1	317	134	172	11.6627
ee[ccc[accc!!cccooooooccc22ccc]a]ccc]e	chr19:9529890-9530204(-)$1	314	161	199	18.4584
$ccc!!a!!gggggggooooooggggggg22a22ccc3	chr14:60760292-60760580(+)$1	288	72	110	15.8517
"""ggggggg[bb[cccnnnnnccc22bbggggggg44	chr10:3821308-3821552(-)$1	244	15	53	12.5448
bb[accc[bb!!ddddoooooodddd22bb]ccc]a]b	chr10:18965848-18966113(+)$1	265	75	113	14.8807
cc[bb[cccgggggggaooooooa]ggggggg]ccc]b	chr17:40462646-40462887(+)$1	241	195	233	14.4038
a[a[bb!!ccc[ddddoooooodddd]ccc22bb]a]a	chr15:77404856-77405130(-)$1	274	56	94	15.6104
gg[cccxxxxxxxxxxxxxxxccc]ggggggg]ggggg	chr5:137495169-137495485(-)$1	316	59	97	10.2618
====ccc!!accc!!cccmmmmccc22ccc]a22ccc:	chr2:118867069-118867396(+)$1	327	51	89	12.3040
dddd!!ggggggg[cccmmmmccc]ggggggg]dddd3	chr5:176563871-176564186(+)$1	315	203	241	11.0452
c!!cccccc!!eeeeeooooooeeeeeccc]ccc]ccc	chr4:129783869-129784122(+)$1	253	138	176	16.5046
%%ggggggg####cccooooooccc666666ggggggg	chr4:109588780-109589037(+)$1	257	135	173	14.2070
ee!!ggggggg[a[ddddllldddd]a333ggggggg4	chr20:61519847-61520148(-)$1	301	164	202	12.6452
[ffffff$$$$$ddddooooooddddffffff]ddddE	chr16:29679662-29679892(+)$1	230	116	154	12.6618
cccccc"""ffffffooooooffffffccc]ccccccb	chr6:161574461-161574743(-)$1	282	213	251	14.0299
hhhccc!!dddd[cccnnnnnccc333dddd4444ccc	chr1:20235951-20236257(+)$1	306	171	209	12.3314
[ggggggg$$$$$cccooooooccc22ggggggg]ccc	chr3:50367822-50368040(-)$1	218	103	141	17.4739
ee####ccc####cccnnnnnccc4444ccc4444eee	chr7:149186166-149186483(-)$1	317	73	111	13.1709
iiigggggggvvvvvvvvvvvvvggggggg]iiiiiii	chr1:247200024-247200295(-)$1	271	154	192	10.9449
dd[ccc!!ffffffcccmmmmccc333ffffff22ccc	chrX:152961570-152961785(+)$1	215	60	98	12.0049
ehhhhhhhh[gggggggooooooggggggg]hhhhhhh	chr22:40368327-40368564(+)$1	237	68	106	12.4333
gggggg[a!!a[eeeeemmmmeeeee]a22aggggggg	chr6:37299455-37299732(+)$1	277	2	40	12.0335
gggggg!!ccc[ddddnnnnndddd]ccc333gggggg	chrX:100297155-100297459(-)$1	304	1	39	14.2063
((dddd"""eeeee[aooooooaeeeee333ddddiii	chr19:32973264-32973583(+)$1	319	111	149	13.0291
ca!!dddd$$$$$cccooooooccc4444dddd22a]c	chr17:79530968-79531238(-)$1	270	64	102	14.8494
[ccc[a[ccc"""cccooooooccc333ccc]acccgg	chr16:69733648-69733931(+)$1	283	113	151	18.0670
gggg####ccc!!cccooooooccc]ccc22ggggggg	chr16:29679270-29679525(+)$1	255	154	192	18.0331
ee%%%%%%ccc!!cccooooooccc22ccc22eeeee]	chr22:21802026-21802233(+)$1	207	113	151	13.5389
gggggccc!!ffffffooooooffffff4444ccc333	chr1:44443290-44443564(+)$1	274	109	147	15.1787
###ccc!!a[ddddoooooodddda22ccc4444dddd	chr2:172289485-172289779(-)$1	294	178	216	13.6068
g"""ccc[ccc[ddddmmmmdddd333ccc22ccc]gg	chr9:125866419-125866677(+)$1	258	41	79	12.8760
dd[ccc!!ccc"""ccclllccccccccc]dddd]ddd	chrX:152961483-152961690(+)$1	207	57	95	12.6883
hhhhhhhh[gggggggooooooggggggg]hhhhhhhh	chr12:50872102-50872352(+)$1	250	184	222	13.0909
ddffffff[gggggggooooooggggggg]ffffff]d	chr5:1222027-1222310(+)$1	283	183	221	13.9263
dddd####dddd[cccoooooocccdddd4444dddd:	chr1:33478511-33478750(-)$1	239	197	235	13.4191
ee[ffffff[ffffffooooooffffff]ffffff]ee	chr16:11445348-11445672(+)$1	324	71	109	12.7303
gggccccccvvvvvvvvvvvvvccc22ccc]ggggggg	chr7:135613457-135613686(-)$1	229	147	185	12.0910
ggggg####ccc[bb[annnnna]bbccc333gggggg	chr12:8072383-8072645(-)$1	262	80	118	12.9883
$$gggggggcccddddoooooodddd]ccc]ggggggg	chr1:144990394-144990698(-)$1	304	166	204	15.9687
[cccccc[hhhhhhhhoooooohhhhhhhh]ccc]ccc	chr9:33441561-33441868(-)$1	307	88	126	13.5223
[ggggggg$$$$$cccooooooccc22ggggggg]ccc	chr3:50367735-50368022(-)$1	287	85	123	17.4739
e!!ccc[a!!gggggggoooooogggggggaccc]eee	chr17:37828004-37828316(-)$1	312	173	211	15.3273

#otherMatches

#Seq PSSM
GAAUAAGCAUGUAUAAAUGAGCUUAAGUGUGCUGUGUG	chr1:36180971-36181242(-)$1	271	160	198	16.1678
uguguCCUAGUCACUUGGAGAAGGgugugugugggaug	chr17:76794169-76794492(-)$1	323	173	211	12.1197
GAAACCCAAGGAAUGGCUGUCCCCAUCCUCAUGUGGCU	chr19:50986421-50986696(+)$1	275	89	127	15.1926
guggaguguguguguguguUUCCAUGGUAGGACUCCAG	chr19:13250209-13250505(+)$1	296	120	158	15.3315
GAUCAUUGAAACUGAUUGGGUCGUCAGAAACUGGUCCA	chr3:196197119-196197357(-)$1	238	58	96	13.0388
ggugcaugcuugguguguauuuguacaugucuguauug	chr22:39886606-39886923(+)$1	317	134	172	11.6627
UUUGGGGUACGUGAAUGUGGGAAUUAUCGUCAGCCCUG	chr19:9529890-9530204(-)$1	314	161	199	18.4584
GACAAUCUAACACUCUAUGGUAGGGgugugugugugug	chr14:60760292-60760580(+)$1	288	72	110	15.8517
UAUGUGGGUGACCCUGGACUCGCCACUGGUACCCGCCC	chr10:3821308-3821552(-)$1	244	15	53	12.5448
GCGAAAAGCAGACAUAAAUCGAUAUGGAUGGUUUGUGG	chr10:18965848-18966113(+)$1	265	75	113	14.8807
CCUCCCCUGUGCAGUCCUGGGAUGUGGCUGCAGCAGCG	chr17:40462646-40462887(+)$1	241	195	233	14.4038
AGAGAUGAGCGUUCCUUCCACUGGGGUugugugugugu	chr15:77404856-77405130(-)$1	274	56	94	15.6104
GAUCUCUUUCCUCUUGUUCUUGAGUUUUAAAAUUUUGU	chr5:137495169-137495485(-)$1	316	59	97	10.2618
GUGGCAGUUGUCUGAUCCACAAGGGCAAGAUCUUCUGA	chr2:118867069-118867396(+)$1	327	51	89	12.3040
GGGUGAUAAAUGAUAACAUUUGUUUUUAUUUGAGCUUA	chr5:176563871-176564186(+)$1	315	203	241	11.0452
GAAGAUACUCCUGGCAGUGAGGUGCUAAGUCAUCACUG	chr4:129783869-129784122(+)$1	253	138	176	16.5046
AACUGUUUCCUGAACAAUAAGAUGUAUGAACGGAGCAG	chr4:109588780-109589037(+)$1	257	135	173	14.2070
UCCCCUGUCUCAGCGGACCCUGUCCUCACGGAGAUAGC	chr20:61519847-61520148(-)$1	301	164	202	12.6452
CGCCUCAGAGAuucuuucuuuugagaugaggucucauu	chr16:29679662-29679892(+)$1	230	116	154	12.6618
UCCUGAUUCACUGUGAGGGCACACGGUUCACGGAGAAG	chr6:161574461-161574743(-)$1	282	213	251	14.0299
AGAGGCCAGAUCCUCUCAGAAAGAUAAGAUUGUAUGCC	chr1:20235951-20236257(+)$1	306	171	209	12.3314
UGGGGCCUGUGGAAUGAGUGUGCAUGGAGGCCCUCCUG	chr3:50367822-50368040(-)$1	218	103	141	17.4739
uucaauaacuauuugcugaauguaugCUGUUUCAAAAU	chr7:149186166-149186483(-)$1	317	73	111	13.1709
GUUGUAAAGAUUUUCUUCUGUUUUCUUUGCUAAUAAAG	chr1:247200024-247200295(-)$1	271	154	192	10.9449
AGUGCAUGGUGGGGGCCUCGGGGCUGUCCCCACGCUGU	chrX:152961570-152961785(+)$1	215	60	98	12.0049
cgcacauauuugugcacuccuguguguauacaugugug	chr22:40368327-40368564(+)$1	237	68	106	12.4333
UCUAGAUGGAGGAGGCACUGAUGCUUGUAACUCUGGAA	chr6:37299455-37299732(+)$1	277	2	40	12.0335
CAGUAAUUCAGUUCUGCUCAACAGGCUUGCUUUUACUG	chrX:100297155-100297459(-)$1	304	1	39	14.2063
UUAACAACUUUCUAAGAGUGACCUAGAAUUAUGUUGUU	chr19:32973264-32973583(+)$1	319	111	149	13.0291
ccuaauaguuuuucagcccgcccugcucUUugugugug	chr17:79530968-79531238(-)$1	270	64	102	14.8494
uguguguguguguguguUUCCUUAUUGUCAUUCCAUUA	chr16:69733648-69733931(+)$1	283	113	151	18.0670
GGUUGGAAGGCUUCACCUGAGAGUGUGUCGUGGCCUUU	chr16:29679270-29679525(+)$1	255	154	192	18.0331
UCGCUUUCCCUCCUUCCUCGCUGAACAAGGUGGAGACU	chr22:21802026-21802233(+)$1	207	113	151	13.5389
UGGGUGCUUGACUGAGUUGAUUCUUAGUGACUAGCUUU	chr1:44443290-44443564(+)$1	274	109	147	15.1787
ccaccuugcacccugagcugaggggauaggcuucagcc	chr2:172289485-172289779(-)$1	294	178	216	13.6068
UCAAGAUUCCUAGUGUUUUUGCACAACAGGUUGUCCAA	chr9:125866419-125866677(+)$1	258	41	79	12.8760
UAGGCAAAACAAAAGCUUCGAGCUGUUGCGUGUGUGAG	chrX:152961483-152961690(+)$1	207	57	95	12.6883
AUUUGGUUCUUUAGAUGGAGGAAUUUAAAAAAUCAAAU	chr12:50872102-50872352(+)$1	250	184	222	13.0909
acugugugagugugcacguguaugcacacauauacaug	chr5:1222027-1222310(+)$1	283	183	221	13.9263
AAGUUUUAGGCUAGGUUGCUUUACCAGCUGUUUACuuc	chr1:33478511-33478750(-)$1	239	197	235	13.4191
UGUAGAGUUCUUUUGUCUUUGUAUGGAAUGACUUUUUG	chr16:11445348-11445672(+)$1	324	71	109	12.7303
UUUUGUUGCUUUUAUAAAUCAUGCAUUACAUAAAGUGU	chr7:135613457-135613686(-)$1	229	147	185	12.0910
GUGUAGCCCACACUUGAGAGGAUGAAUGUAUGUGCACU	chr12:8072383-8072645(-)$1	262	80	118	12.9883
UUGUGAGUAGUAAUUAUUUUAUUGAUGUGCAUAUUUAU	chr1:144990394-144990698(-)$1	304	166	204	15.9687
GGCAGCAGguaugugugugugugcaugugugugcaugu	chr9:33441561-33441868(-)$1	307	88	126	13.5223
UGGGGCCUGUGGAAUGAGUGUGCAUGGAGGCCCUCCUG	chr3:50367735-50368022(-)$1	287	85	123	17.4739
AGAGGUUGGAGCAGGAUGAGGGAAUCCUGUCACCAUCA	chr17:37828004-37828316(-)$1	312	173	211	15.3273

#DB
(....((((((..(((......)))..))))))...))	chr1:36180971-36181242(-)$1	1	160	198	16.1678
...((((((..(((((......)))))....)))))))	chr17:76794169-76794492(-)$1	1	173	211	12.1197
(..((...((((.(((......)))))))...))..))	chr19:50986421-50986696(+)$1	1	89	127	15.1926
(((((((.(...((((......))))...).)))))).	chr19:13250209-13250505(+)$1	1	120	158	15.3315
(((((......(((((......)))))....)))))))	chr3:196197119-196197357(-)$1	1	58	96	13.0388
((((((.((...(((((......))))))).)))))..	chr22:39886606-39886923(+)$1	1	134	172	11.6627
((.(((.((((..(((......)))..))).).))).)	chr19:9529890-9530204(-)$1	1	161	199	18.4584
.(((..(..(((((((......)))))))..)..))).	chr14:60760292-60760580(+)$1	1	72	110	15.8517
...(((((((.((.(((.....)))..)))))))))..	chr10:3821308-3821552(-)$1	1	15	53	12.5448
((.((((.((..((((......))))..)).))).).)	chr10:18965848-18966113(+)$1	1	75	113	14.8807
((.((.(((((((((((......).))))))).))).)	chr17:40462646-40462887(+)$1	1	195	233	14.4038
(.(.((..(((.((((......)))).)))..)).).)	chr15:77404856-77405130(-)$1	1	56	94	15.6104
((.(((...............))).))))))).)))))	chr5:137495169-137495485(-)$1	1	59	97	10.2618
))))(((..((((..(((....)))..))).)..))).	chr2:118867069-118867396(+)$1	1	51	89	12.3040
((((..(((((((.(((....))).))))))).)))).	chr5:176563871-176564186(+)$1	1	203	241	11.0452
(..((((((..(((((......)))))))).))).)))	chr4:129783869-129784122(+)$1	1	138	176	16.5046
..(((((((....(((......)))......)))))))	chr4:109588780-109589037(+)$1	1	135	173	14.2070
((..(((((((.(.((((...)))).)...))))))).	chr20:61519847-61520148(-)$1	1	164	202	12.6452
.((((((.....((((......)))))))))).)))))	chr16:29679662-29679892(+)$1	1	116	154	12.6618
((((((...((((((......))))))))).)))))))	chr6:161574461-161574743(-)$1	1	213	251	14.0299
)))(((..((((.(((.....)))...))))....)))	chr1:20235951-20236257(+)$1	1	171	209	12.3314
.(((((((.....(((......)))..))))))).)))	chr3:50367822-50368040(-)$1	1	103	141	17.4739
((....(((....(((.....)))....)))....)))	chr7:149186166-149186483(-)$1	1	73	111	13.1709
((((((((((.............))))))).)))))))	chr1:247200024-247200295(-)$1	1	154	192	10.9449
((.(((..(((((((((....)))...))))))..)))	chrX:152961570-152961785(+)$1	1	60	98	12.0049
(((((((((.(((((((......))))))).)))))))	chr22:40368327-40368564(+)$1	1	68	106	12.4333
((((((.(..(.(((((....))))).)..))))))))	chr6:37299455-37299732(+)$1	1	2	40	12.0335
((((((..(((.((((.....)))).)))...))))))	chrX:100297155-100297459(-)$1	1	1	39	14.2063
..((((...(((((.(......))))))...)))))))	chr19:32973264-32973583(+)$1	1	111	149	13.0291
((..((((.....(((......)))....))))..).)	chr17:79530968-79531238(-)$1	1	64	102	14.8494
.(((.(.(((...(((......)))...))).))))))	chr16:69733648-69733931(+)$1	1	113	151	18.0670
((((....(((..(((......))).)))..)))))))	chr16:29679270-29679525(+)$1	1	154	192	18.0331
((......(((..(((......)))..)))..))))).	chr22:21802026-21802233(+)$1	1	113	151	13.5389
((((((((..((((((......))))))....)))...	chr1:44443290-44443564(+)$1	1	109	147	15.1787
...(((..(.((((......)))))..)))....))))	chr2:172289485-172289779(-)$1	1	178	216	13.6068
(...(((.(((.((((....))))...)))..))).))	chr9:125866419-125866677(+)$1	1	41	79	12.8760
((.(((..(((...(((...))))))))).)))).)))	chrX:152961483-152961690(+)$1	1	57	95	12.6883
((((((((.(((((((......))))))).))))))))	chr12:50872102-50872352(+)$1	1	184	222	13.0909
((((((((.(((((((......))))))).)))))).)	chr5:1222027-1222310(+)$1	1	183	221	13.9263
((((....((((.(((......)))))))....)))).	chr1:33478511-33478750(-)$1	1	197	235	13.4191
((.((((((.((((((......)))))).)))))).))	chr16:11445348-11445672(+)$1	1	71	109	12.7303
(((((((((.............)))..))).)))))))	chr7:135613457-135613686(-)$1	1	147	185	12.0910
(((((....(((.((.(.....).)))))...))))))	chr12:8072383-8072645(-)$1	1	80	118	12.9883
..((((((((((((((......)))).))).)))))))	chr1:144990394-144990698(-)$1	1	166	204	15.9687
.((((((.((((((((......)))))))).))).)))	chr9:33441561-33441868(-)$1	1	88	126	13.5223
.(((((((.....(((......)))..))))))).)))	chr3:50367735-50368022(-)$1	1	85	123	17.4739
(..(((.(..(((((((......))))))))))).)))	chr17:37828004-37828316(-)$1	1	173	211	15.3273

#PSSM
g : 0.17	e : 0.14	c : 0.10	d : 0.10	[ : 0.10	h : 0.06	i : 0.04	b : 0.04	= : 0.04	$ : 0.04	+ : 0.02	" : 0.02	a : 0.02	% : 0.02	( : 0.02	# : 0.02	
g : 0.19	e : 0.12	c : 0.10	d : 0.10	! : 0.06	h : 0.06	# : 0.04	f : 0.04	= : 0.04	" : 0.04	+ : 0.02	b : 0.02	[ : 0.02	% : 0.02	i : 0.02	( : 0.02	a : 0.02	$ : 0.02	
g : 0.21	[ : 0.14	! : 0.10	c : 0.08	# : 0.06	f : 0.06	d : 0.06	h : 0.06	= : 0.04	" : 0.04	+ : 0.02	e : 0.02	a : 0.02	i : 0.02	% : 0.02	
c : 0.27	g : 0.23	f : 0.10	d : 0.06	# : 0.04	b : 0.04	= : 0.04	! : 0.04	h : 0.04	e : 0.02	a : 0.02	[ : 0.02	% : 0.02	" : 0.02	
c : 0.29	g : 0.23	f : 0.10	# : 0.08	b : 0.06	! : 0.04	h : 0.04	d : 0.04	= : 0.02	e : 0.02	[ : 0.02	% : 0.02	
c : 0.31	g : 0.19	f : 0.12	# : 0.08	% : 0.04	! : 0.04	h : 0.04	d : 0.04	" : 0.02	e : 0.02	[ : 0.02	b : 0.02	a : 0.02	
c : 0.19	g : 0.17	f : 0.12	! : 0.12	[ : 0.10	" : 0.06	# : 0.06	% : 0.04	h : 0.04	a : 0.02	x : 0.02	d : 0.02	
! : 0.17	g : 0.17	c : 0.12	f : 0.08	[ : 0.08	" : 0.06	a : 0.06	# : 0.06	% : 0.04	h : 0.04	b : 0.02	x : 0.02	$ : 0.02	d : 0.02	
c : 0.25	g : 0.12	! : 0.10	f : 0.08	$ : 0.08	d : 0.06	a : 0.04	b : 0.04	" : 0.04	h : 0.04	[ : 0.04	% : 0.02	x : 0.02	# : 0.02	
c : 0.21	g : 0.17	! : 0.10	$ : 0.08	f : 0.06	d : 0.06	[ : 0.06	" : 0.04	# : 0.04	% : 0.02	b : 0.02	x : 0.02	a : 0.02	e : 0.02	v : 0.02	h : 0.02	
c : 0.21	g : 0.17	f : 0.10	d : 0.08	$ : 0.08	! : 0.06	" : 0.06	# : 0.04	v : 0.04	% : 0.02	[ : 0.02	x : 0.02	a : 0.02	e : 0.02	h : 0.02	
g : 0.14	! : 0.10	[ : 0.10	e : 0.08	d : 0.08	" : 0.08	$ : 0.08	f : 0.08	c : 0.06	# : 0.04	v : 0.04	b : 0.02	x : 0.02	h : 0.02	
d : 0.17	g : 0.14	e : 0.12	! : 0.08	[ : 0.08	f : 0.08	$ : 0.06	# : 0.04	v : 0.04	" : 0.04	b : 0.02	x : 0.02	c : 0.02	a : 0.02	h : 0.02	
c : 0.27	d : 0.17	e : 0.12	g : 0.12	f : 0.08	[ : 0.06	v : 0.04	x : 0.02	! : 0.02	" : 0.02	b : 0.02	h : 0.02	
c : 0.36	d : 0.17	g : 0.12	e : 0.10	f : 0.06	v : 0.04	x : 0.02	! : 0.02	[ : 0.02	o : 0.02	b : 0.02	h : 0.02	
c : 0.38	d : 0.17	g : 0.12	e : 0.10	o : 0.04	v : 0.04	f : 0.04	x : 0.02	a : 0.02	[ : 0.02	h : 0.02	
o : 0.59	c : 0.10	n : 0.06	e : 0.04	a : 0.04	v : 0.04	g : 0.04	x : 0.02	d : 0.02	m : 0.02	
o : 0.68	n : 0.10	m : 0.08	v : 0.04	x : 0.02	c : 0.02	d : 0.02	l : 0.02	
o : 0.68	n : 0.10	m : 0.10	l : 0.04	v : 0.04	x : 0.02	
o : 0.68	n : 0.10	m : 0.10	l : 0.04	v : 0.04	x : 0.02	
o : 0.65	n : 0.10	m : 0.08	v : 0.04	d : 0.04	x : 0.02	l : 0.02	c : 0.02	
o : 0.63	c : 0.12	d : 0.08	n : 0.04	v : 0.04	m : 0.02	f : 0.02	e : 0.02	
c : 0.42	d : 0.19	e : 0.08	o : 0.08	g : 0.06	f : 0.06	a : 0.04	v : 0.02	h : 0.02	
c : 0.42	d : 0.19	e : 0.12	g : 0.12	f : 0.06	a : 0.02	] : 0.02	h : 0.02	
c : 0.31	d : 0.14	e : 0.12	g : 0.12	] : 0.06	f : 0.06	3 : 0.06	4 : 0.02	a : 0.02	b : 0.02	h : 0.02	
2 : 0.19	g : 0.19	d : 0.14	e : 0.12	3 : 0.08	] : 0.06	f : 0.06	4 : 0.04	6 : 0.02	c : 0.02	b : 0.02	h : 0.02	
2 : 0.21	g : 0.19	e : 0.10	3 : 0.10	f : 0.08	c : 0.08	] : 0.06	d : 0.04	4 : 0.04	6 : 0.02	a : 0.02	h : 0.02	
c : 0.29	g : 0.23	f : 0.10	4 : 0.08	d : 0.06	3 : 0.06	e : 0.04	b : 0.02	2 : 0.02	6 : 0.02	a : 0.02	h : 0.02	
c : 0.34	g : 0.23	4 : 0.08	f : 0.06	d : 0.06	3 : 0.06	b : 0.06	6 : 0.02	2 : 0.02	] : 0.02	h : 0.02	
c : 0.25	g : 0.19	3 : 0.10	f : 0.08	4 : 0.08	2 : 0.06	] : 0.06	b : 0.04	d : 0.04	a : 0.02	6 : 0.02	h : 0.02	
] : 0.25	g : 0.14	f : 0.10	4 : 0.10	2 : 0.10	3 : 0.08	d : 0.06	c : 0.04	a : 0.04	6 : 0.02	h : 0.02	
g : 0.25	f : 0.14	c : 0.10	4 : 0.10	3 : 0.06	a : 0.06	2 : 0.06	d : 0.06	h : 0.04	= : 0.02	e : 0.02	i : 0.02	] : 0.02	
g : 0.23	c : 0.14	f : 0.12	] : 0.10	4 : 0.08	d : 0.06	b : 0.04	e : 0.04	2 : 0.04	h : 0.04	= : 0.02	i : 0.02	a : 0.02	
g : 0.25	c : 0.21	d : 0.10	f : 0.08	2 : 0.08	4 : 0.06	b : 0.04	e : 0.04	h : 0.04	3 : 0.02	= : 0.02	i : 0.02	
g : 0.21	c : 0.17	] : 0.17	d : 0.10	f : 0.08	2 : 0.06	e : 0.04	4 : 0.04	h : 0.04	3 : 0.02	= : 0.02	i : 0.02	
c : 0.25	g : 0.21	d : 0.10	e : 0.08	f : 0.06	a : 0.06	3 : 0.04	i : 0.04	h : 0.04	] : 0.04	2 : 0.02	= : 0.02	
g : 0.23	c : 0.21	] : 0.12	d : 0.10	e : 0.08	i : 0.06	f : 0.04	h : 0.04	= : 0.02	2 : 0.02	4 : 0.02	3 : 0.02	
g : 0.21	c : 0.17	e : 0.08	i : 0.06	4 : 0.06	3 : 0.06	b : 0.06	d : 0.06	: : 0.04	h : 0.04	f : 0.02	= : 0.02	2 : 0.02	a : 0.02	E : 0.02	] : 0.02	

#score	655.9292854641404
#seq	47
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_transcript_m3_run2.txt

#BEAR
$$cccbbqqqqqqqqbb]ccc4	chr14:23389982-23390266(-)$1	284	247	269	14.4045
""eeeeeqqqqqqqqeeeee]c	chr7:95034378-95034624(-)$1	246	62	84	15.6715
[aeeeeeqqqqqqqqeeeee]a	chr19:12858918-12859216(+)$1	298	82	104	15.5243
"bb[cccqqqqqqqqccc]bb2	chr7:134127242-134127533(-)$1	291	22	44	14.0763
gggggggqqqqqqqqggggggg	chr20:2451232-2451465(-)$1	233	174	196	15.6189
[dddd[aqqqqqqqqa]dddd]	chr9:19379433-19379678(-)$1	245	110	132	14.3191
:ffffffqqqqqqqqffffffe	chr19:12779069-12779328(-)$1	259	167	189	14.0586
ffeeeeeqqqqqqqqeeeee::	chr10:120927310-120927594(-)$1	284	36	58	13.2499
gggggggqqqqqqqqggggggg	chr9:140446424-140446649(+)$1	225	39	61	15.6189
b[eeeeeqqqqqqqqeeeee]b	chr1:20978680-20978921(-)$1	241	10	32	15.1483
""eeeeeqqqqqqqqeeeee55	chr20:24944005-24944274(-)$1	269	110	132	13.9842
hffffffqqqqqqqqffffff3	chr16:85833195-85833412(+)$1	217	108	130	14.9193
gggggggqqqqqqqqggggggg	chr8:145065394-145065673(+)$1	279	180	202	15.6189
gggggggqqqqqqqqggggggg	chr6:24785917-24786225(+)$1	308	73	95	15.6189
a"""cccqqqqqqqqccc]a]b	chr2:217365962-217366168(+)$1	206	167	189	15.2504
fff[cccqqqqqqqqccc]fff	chr14:95035907-95036164(+)$1	257	218	240	15.1913
"""ddddqqqqqqqqdddd]gg	chr19:42752555-42752828(-)$1	273	190	212	14.6398
""eeeeeqqqqqqqqeeeee44	chr14:51371865-51372132(-)$1	267	127	149	15.5268
fffff[aqqqqqqqqaffffff	chr2:84650620-84650967(-)$1	347	324	346	15.0857
[ffffffqqqqqqqqffffffc	chrX:105277343-105277673(-)$1	330	277	299	15.1976
fffffbbqqqqqqqqbb]ffff	chrX:152915868-152916104(+)$1	236	145	167	14.4908
gggggggqqqqqqqqggggggg	chr17:6917414-6917673(+)$1	259	33	55	15.6189
ddd[cccqqqqqqqqcccdddd	chr20:60962836-60963058(+)$1	222	2	24	14.2696
$$$$cccqqqqqqqqccceeee	chr7:6502653-6502906(-)$1	253	223	245	14.4063
ffffcccqqqqqqqqccc]fff	chr7:75695711-75695988(+)$1	277	82	104	15.0886
cc[ddddqqqqqqqqddddccc	chr20:32664874-32665142(+)$1	268	158	180	14.2565
[a[ddddqqqqqqqqdddd]aa	chr3:49394657-49394939(-)$1	282	66	88	14.4502
:ffffffqqqqqqqqffffff:	chr9:19376265-19376486(-)$1	221	138	160	13.3341
dddddddqqqqqqqqdddd22d	chr17:26694283-26694567(-)$1	284	183	205	13.3765
d!!ddddqqqqqqqqddddddd	chrX:48386889-48387130(+)$1	241	22	44	13.9083
[ccc[bbqqqqqqqqbb]ccc3	chr1:116947102-116947417(+)$1	315	231	253	14.7329
=======qqqqqqqq=======	chr14:95059265-95059507(+)$1	242	32	54	15.5509
b[eeeeeqqqqqqqqeeeee]b	chr15:75212667-75212883(-)$1	216	122	144	15.1483
eeeee[aqqqqqqqqa]eeeee	chr14:24114647-24114851(+)$1	204	18	40	14.7741
a!!ddddqqqqqqqqdddd22a	chr19:8553613-8553867(+)$1	254	91	113	14.3373
d[ccc[aqqqqqqqqa]ccc]d	chr17:42088704-42088963(-)$1	259	133	155	15.1646
gggggggqqqqqqqqggggggg	chr11:17096908-17097135(-)$1	227	4	26	15.6189
cc[bbbbqqqqqqqqbb]bbcc	chr16:30087576-30087855(+)$1	279	121	143	13.2838
:ffffffqqqqqqqqffffffi	chr14:74946579-74946823(-)$1	244	147	169	14.1729
cceeeeeqqqqqqqqeeeee]c	chr1:1686713-1687014(-)$1	301	166	188	15.3041
gggg[bbqqqqqqqqbbggggg	chr19:45412341-45412561(+)$1	220	128	150	15.0346
+ccc[bbqqqqqqqqbbcccdd	chr7:150035347-150035628(-)$1	281	235	257	13.6351
ggggg[aqqqqqqqqa]ggggg	chr11:66112807-66113034(-)$1	227	195	217	15.6365
""eeeeeqqqqqqqqeeeee]a	chr7:43846678-43847005(+)$1	327	253	275	15.7093
e"""cccqqqqqqqqccc333e	chr19:12907753-12907973(-)$1	220	194	216	15.1188
gggggggqqqqqqqqggggggg	chr20:2451265-2451530(-)$1	265	239	261	15.6189
gggg[bbqqqqqqqqbb]gggg	chr15:25221382-25221641(+)$1	259	91	113	15.0046
%%eeeeeqqqqqqqqeeeee33	chr2:241466242-241466490(-)$1	248	114	136	14.4485
!!a!!bbqqqqqqqqbb22a33	chr3:194829829-194830148(-)$1	319	236	258	14.5966
fffff[aqqqqqqqqa]fffff	chr4:74320873-74321078(+)$1	205	99	121	15.0623
a[eeeeeqqqqqqqqeeeee]a	chr3:197677736-197677949(+)$1	213	11	33	15.6110
fffff[aqqqqqqqqa]fffff	chr11:64883355-64883736(+)$1	381	258	280	15.0623
ddd!!bbqqqqqqqqbb]dddd	chr17:43247061-43247447(+)$1	386	249	271	13.6211
dffffffqqqqqqqqffffff8	chr20:3018831-3019139(+)$1	308	12	34	14.5244
gggggggqqqqqqqqggggggg	chr1:156107422-156107721(+)$1	299	82	104	15.6189
ddd[cccqqqqqqqqccc22dd	chr19:1300222-1300480(+)$1	258	171	193	14.0439
gggggggqqqqqqqqggggggg	chr11:67803827-67804081(+)$1	254	81	103	15.6189
b[eeeeeqqqqqqqqeeeee]b	chr1:161192160-161192375(-)$1	215	6	28	15.1483
[ffffffqqqqqqqqffffff]	chr17:7417455-7417691(+)$1	236	75	97	15.2329
!!a[cccqqqqqqqqccca22b	chr11:840248-840498(-)$1	250	94	116	15.0576
ccc[cccqqqqqqqqcccccc]	chrX:48750753-48751006(-)$1	253	155	177	15.1820

#otherMatches

#Seq PSSM
CUUGCCCAUCAGAGAGGAGCAU	chr14:23389982-23390266(-)$1	284	247	269	14.4045
CAACAUUGACCCAGAAAUGUAU	chr7:95034378-95034624(-)$1	246	62	84	15.6715
CCCCCCCAUAAUACAGGGGGAG	chr19:12858918-12859216(+)$1	298	82	104	15.5243
ACAAGGAUUACCCCUUCCAUGA	chr7:134127242-134127533(-)$1	291	22	44	14.0763
GUUGUGGAGUGGGAACCGCGAC	chr20:2451232-2451465(-)$1	233	174	196	15.6189
GACGAUGAACGCAAACUUCGUA	chr9:19379433-19379678(-)$1	245	110	132	14.3191
AAGGGUCACAUUUUGGACCCUG	chr19:12779069-12779328(-)$1	259	167	189	14.0586
AGAUCAUAAUUUUCAAUGAUUA	chr10:120927310-120927594(-)$1	284	36	58	13.2499
cggccaggggcggggcuggccg	chr9:140446424-140446649(+)$1	225	39	61	15.6189
CGUCUUCUUGCACAUGAAGGAG	chr1:20978680-20978921(-)$1	241	10	32	15.1483
CAUUCUCUAGGAUUUGGGAAGC	chr20:24944005-24944274(-)$1	269	110	132	13.9842
UUCCGGUCGCGGGACACCGGGU	chr16:85833195-85833412(+)$1	217	108	130	14.9193
AGCCCCUACCCCCAAGGGGGCU	chr8:145065394-145065673(+)$1	279	180	202	15.6189
UGUAUCUUCCUCUACGGAUGCA	chr6:24785917-24786225(+)$1	308	73	95	15.6189
GCUCCUCUACUCUUUGAGACAU	chr2:217365962-217366168(+)$1	206	167	189	15.2504
gcugugcagccucuggcagagc	chr14:95035907-95036164(+)$1	257	218	240	15.1913
CCUGGAGCACCGAGACUCCUGA	chr19:42752555-42752828(-)$1	273	190	212	14.6398
UAUCUCUGGGAAUGGGGAGGGA	chr14:51371865-51372132(-)$1	267	127	149	15.5268
UGGAGGCUUAUUAUUGUUCCAG	chr2:84650620-84650967(-)$1	347	324	346	15.0857
GCAUUCCCUUAUGAUGGGAUGA	chrX:105277343-105277673(-)$1	330	277	299	15.1976
CCAGGCCCAUGUCCCGGCCCUG	chrX:152915868-152916104(+)$1	236	145	167	14.4908
UCAUUCCCACCCCCAGGAAUGG	chr17:6917414-6917673(+)$1	259	33	55	15.6189
UUGAGGAUUGGUGUUUCCCAAA	chr20:60962836-60963058(+)$1	222	2	24	14.2696
AAUCAGAAACUUAACUCUUUUG	chr7:6502653-6502906(-)$1	253	223	245	14.4063
AGAUAAACUUUGUAUUUUAAUU	chr7:75695711-75695988(+)$1	277	82	104	15.0886
ACACAGCGAGGAAGAGCUGGUG	chr20:32664874-32665142(+)$1	268	158	180	14.2565
ACAUCGAGCCUGACAUCGAAGC	chr3:49394657-49394939(-)$1	282	66	88	14.4502
ACGCAGACUUUCCUCUCUGCGA	chr9:19376265-19376486(-)$1	221	138	160	13.3341
AGAGCCCACAUGGCCGGGCCCU	chr17:26694283-26694567(-)$1	284	183	205	13.3765
CUGCUCCCACAGUUUGGAGGGA	chrX:48386889-48387130(+)$1	241	22	44	13.9083
AAGACUGAAAGAAUACAUUUUA	chr1:116947102-116947417(+)$1	315	231	253	14.7329
UUAUAUCAUUUUGUGGAUAUAG	chr14:95059265-95059507(+)$1	242	32	54	15.5509
UGACAUUGCUACUUGAGUGUGA	chr15:75212667-75212883(-)$1	216	122	144	15.1483
AUUAACAUGUGGGGUUCUUGGU	chr14:24114647-24114851(+)$1	204	18	40	14.7741
AGAGAUUGACGUUCGAAUUGAU	chr19:8553613-8553867(+)$1	254	91	113	14.3373
GGCCCAGGAAGGGCACAGGGGC	chr17:42088704-42088963(-)$1	259	133	155	15.1646
GUUUUGUGACAGGCAAUAAAAU	chr11:17096908-17097135(-)$1	227	4	26	15.6189
CAUGGCGGAGAUCAGCGACCUG	chr16:30087576-30087855(+)$1	279	121	143	13.2838
AAUAAAUAAAAACUCGUUUGUC	chr14:74946579-74946823(-)$1	244	147	169	14.1729
AGAACUUUCAGUCCCAAGUUAC	chr1:1686713-1687014(-)$1	301	166	188	15.3041
GCACCAGCGCCGCCCCUGUGCC	chr19:45412341-45412561(+)$1	220	128	150	15.0346
CACGACUUCCUCCUUAGCGUAG	chr7:150035347-150035628(-)$1	281	235	257	13.6351
GGCUCCGUUACUCUCCUGAGCU	chr11:66112807-66113034(-)$1	227	195	217	15.6365
GAAACAAGAAUCUUAUUGUUAU	chr7:43846678-43847005(+)$1	327	253	275	15.7093
AAACUCCACAGUAUGGGACCCU	chr19:12907753-12907973(-)$1	220	194	216	15.1188
GUUGUGGAGUGGGAACCGCGAC	chr20:2451265-2451530(-)$1	265	239	261	15.6189
GAGCGUGAAGAAAAGCGGGUUU	chr15:25221382-25221641(+)$1	259	91	113	15.0046
UGCACAGGUUCUCGAUUGUGAA	chr2:241466242-241466490(-)$1	248	114	136	14.4485
AAGAGUGGAGAUCUGCAAGCAA	chr3:194829829-194830148(-)$1	319	236	258	14.5966
AACUCGUGCUGCUUUGGGAGUU	chr4:74320873-74321078(+)$1	205	99	121	15.0623
GGACGAGGUGGGAAACUUGUGU	chr3:197677736-197677949(+)$1	213	11	33	15.6110
GGGCUUGCACCCCACCCAGCCC	chr11:64883355-64883736(+)$1	381	258	280	15.0623
GGUUCAGACUCCCACCUCACCG	chr17:43247061-43247447(+)$1	386	249	271	13.6211
AAUAUACCCCAAAUUGUGUAUA	chr20:3018831-3019139(+)$1	308	12	34	14.5244
GAUGGAGAUGACCUGCUCCAUC	chr1:156107422-156107721(+)$1	299	82	104	15.6189
GGGUCGGGAACACAGCCGCUCC	chr19:1300222-1300480(+)$1	258	171	193	14.0439
CCCUGCACCUCAACCUGCAGGG	chr11:67803827-67804081(+)$1	254	81	103	15.6189
GCCCCUGCCAGUGCCUAGGGUC	chr1:161192160-161192375(-)$1	215	6	28	15.1483
GGGCAGCUUGCCCGUGCUGCUG	chr17:7417455-7417691(+)$1	236	75	97	15.2329
AAGCUGCUCAAUUAUGCACCCC	chr11:840248-840498(-)$1	250	94	116	15.0576
AGAUGGGUCCCCUUUUUCUCUC	chrX:48750753-48751006(-)$1	253	155	177	15.1820

#DB
..(((((........)).))).	chr14:23389982-23390266(-)$1	1	247	269	14.4045
..(((((........))))).)	chr7:95034378-95034624(-)$1	1	62	84	15.6715
.((((((........))))).)	chr19:12858918-12859216(+)$1	1	82	104	15.5243
.((.(((........))).)).	chr7:134127242-134127533(-)$1	1	22	44	14.0763
(((((((........)))))))	chr20:2451232-2451465(-)$1	1	174	196	15.6189
.((((.(........).)))).	chr9:19379433-19379678(-)$1	1	110	132	14.3191
.((((((........))))))(	chr19:12779069-12779328(-)$1	1	167	189	14.0586
))(((((........)))))..	chr10:120927310-120927594(-)$1	1	36	58	13.2499
(((((((........)))))))	chr9:140446424-140446649(+)$1	1	39	61	15.6189
(.(((((........))))).)	chr1:20978680-20978921(-)$1	1	10	32	15.1483
..(((((........)))))..	chr20:24944005-24944274(-)$1	1	110	132	13.9842
(((((((........)))))).	chr16:85833195-85833412(+)$1	1	108	130	14.9193
(((((((........)))))))	chr8:145065394-145065673(+)$1	1	180	202	15.6189
(((((((........)))))))	chr6:24785917-24786225(+)$1	1	73	95	15.6189
(...(((........))).).)	chr2:217365962-217366168(+)$1	1	167	189	15.2504
(((.(((........))).)))	chr14:95035907-95036164(+)$1	1	218	240	15.1913
...((((........)))).))	chr19:42752555-42752828(-)$1	1	190	212	14.6398
..(((((........)))))..	chr14:51371865-51372132(-)$1	1	127	149	15.5268
(((((.(........)))))))	chr2:84650620-84650967(-)$1	1	324	346	15.0857
.((((((........)))))))	chrX:105277343-105277673(-)$1	1	277	299	15.1976
(((((((........)).))))	chrX:152915868-152916104(+)$1	1	145	167	14.4908
(((((((........)))))))	chr17:6917414-6917673(+)$1	1	33	55	15.6189
(((.(((........)))))))	chr20:60962836-60963058(+)$1	1	2	24	14.2696
....(((........)))))))	chr7:6502653-6502906(-)$1	1	223	245	14.4063
(((((((........))).)))	chr7:75695711-75695988(+)$1	1	82	104	15.0886
((.((((........)))))))	chr20:32664874-32665142(+)$1	1	158	180	14.2565
.(.((((........)))).))	chr3:49394657-49394939(-)$1	1	66	88	14.4502
.((((((........)))))).	chr9:19376265-19376486(-)$1	1	138	160	13.3341
(((((((........))))..)	chr17:26694283-26694567(-)$1	1	183	205	13.3765
(..((((........)))))))	chrX:48386889-48387130(+)$1	1	22	44	13.9083
.(((.((........)).))).	chr1:116947102-116947417(+)$1	1	231	253	14.7329
(((((((........)))))))	chr14:95059265-95059507(+)$1	1	32	54	15.5509
(.(((((........))))).)	chr15:75212667-75212883(-)$1	1	122	144	15.1483
(((((.(........).)))))	chr14:24114647-24114851(+)$1	1	18	40	14.7741
(..((((........))))..)	chr19:8553613-8553867(+)$1	1	91	113	14.3373
(.(((.(........).))).)	chr17:42088704-42088963(-)$1	1	133	155	15.1646
(((((((........)))))))	chr11:17096908-17097135(-)$1	1	4	26	15.6189
((.((((........)).))))	chr16:30087576-30087855(+)$1	1	121	143	13.2838
.((((((........))))))(	chr14:74946579-74946823(-)$1	1	147	169	14.1729
(((((((........))))).)	chr1:1686713-1687014(-)$1	1	166	188	15.3041
((((.((........)))))))	chr19:45412341-45412561(+)$1	1	128	150	15.0346
.(((.((........)))))))	chr7:150035347-150035628(-)$1	1	235	257	13.6351
(((((.(........).)))))	chr11:66112807-66113034(-)$1	1	195	217	15.6365
..(((((........))))).)	chr7:43846678-43847005(+)$1	1	253	275	15.7093
(...(((........)))...)	chr19:12907753-12907973(-)$1	1	194	216	15.1188
(((((((........)))))))	chr20:2451265-2451530(-)$1	1	239	261	15.6189
((((.((........)).))))	chr15:25221382-25221641(+)$1	1	91	113	15.0046
..(((((........)))))..	chr2:241466242-241466490(-)$1	1	114	136	14.4485
..(..((........))..)..	chr3:194829829-194830148(-)$1	1	236	258	14.5966
(((((.(........).)))))	chr4:74320873-74321078(+)$1	1	99	121	15.0623
(.(((((........))))).)	chr3:197677736-197677949(+)$1	1	11	33	15.6110
(((((.(........).)))))	chr11:64883355-64883736(+)$1	1	258	280	15.0623
(((..((........)).))))	chr17:43247061-43247447(+)$1	1	249	271	13.6211
(((((((........)))))).	chr20:3018831-3019139(+)$1	1	12	34	14.5244
(((((((........)))))))	chr1:156107422-156107721(+)$1	1	82	104	15.6189
(((.(((........)))..))	chr19:1300222-1300480(+)$1	1	171	193	14.0439
(((((((........)))))))	chr11:67803827-67804081(+)$1	1	81	103	15.6189
(.(((((........))))).)	chr1:161192160-161192375(-)$1	1	6	28	15.1483
.((((((........)))))).	chr17:7417455-7417691(+)$1	1	75	97	15.2329
..(.(((........))))..)	chr11:840248-840498(-)$1	1	94	116	15.0576
(((.(((........)))))).	chrX:48750753-48751006(-)$1	1	155	177	15.1820

#PSSM
g : 0.19	f : 0.11	d : 0.11	" : 0.09	[ : 0.09	c : 0.06	: : 0.04	b : 0.04	a : 0.04	$ : 0.03	e : 0.03	! : 0.03	h : 0.01	= : 0.01	+ : 0.01	% : 0.01	
f : 0.22	g : 0.19	" : 0.11	c : 0.09	d : 0.08	[ : 0.08	! : 0.06	$ : 0.03	a : 0.03	b : 0.01	= : 0.01	e : 0.01	% : 0.01	
e : 0.21	f : 0.21	g : 0.19	c : 0.08	d : 0.08	" : 0.04	[ : 0.04	! : 0.03	a : 0.03	b : 0.01	$ : 0.01	= : 0.01	
e : 0.21	g : 0.19	f : 0.19	d : 0.11	[ : 0.09	c : 0.06	" : 0.03	! : 0.03	$ : 0.01	= : 0.01	b : 0.01	
e : 0.21	c : 0.19	f : 0.18	g : 0.16	d : 0.11	[ : 0.06	! : 0.03	= : 0.01	b : 0.01	
e : 0.19	c : 0.16	b : 0.14	g : 0.14	[ : 0.11	f : 0.11	d : 0.09	= : 0.01	
e : 0.19	c : 0.16	b : 0.14	g : 0.14	a : 0.11	f : 0.11	d : 0.09	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
e : 0.19	c : 0.16	b : 0.14	g : 0.14	a : 0.11	f : 0.11	d : 0.09	= : 0.01	
e : 0.19	c : 0.16	b : 0.14	g : 0.14	f : 0.13	] : 0.09	d : 0.09	= : 0.01	
e : 0.21	c : 0.19	g : 0.18	f : 0.16	d : 0.11	] : 0.09	= : 0.01	2 : 0.01	
e : 0.22	g : 0.19	f : 0.18	d : 0.14	c : 0.08	] : 0.06	2 : 0.03	= : 0.01	b : 0.01	3 : 0.01	a : 0.01	
e : 0.22	f : 0.21	g : 0.19	c : 0.09	d : 0.06	2 : 0.06	b : 0.03	a : 0.03	] : 0.03	= : 0.01	3 : 0.01	
g : 0.21	f : 0.21	] : 0.16	d : 0.09	c : 0.08	2 : 0.04	3 : 0.04	e : 0.03	b : 0.01	: : 0.01	5 : 0.01	4 : 0.01	a : 0.01	= : 0.01	
g : 0.21	d : 0.11	f : 0.09	c : 0.08	a : 0.08	b : 0.08	e : 0.06	3 : 0.06	] : 0.04	4 : 0.03	: : 0.03	2 : 0.01	5 : 0.01	= : 0.01	i : 0.01	8 : 0.01	

#score	904.5998125860973
#seq	61
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_transcript_m2_run1.txt

#BEAR
!ccc[ccceeeeemmmmeeeee]cccccc	chr3:195701258-195701509(-)$1	251	130	159	9.9437
"""ccc$$$$$bbmmmmbb4444ccc333	chr3:184035500-184035740(+)$1	240	127	156	11.1165
cc[bb[bb"""bbmmmmbb333bb]bb]c	chr19:50180457-50180672(+)$1	215	177	206	10.8022
ccceeeeecccbbmmmmbb]ccc]eeeee	chr11:5270355-5270599(-)$1	244	162	191	10.9262
cc!!eeeee[a[ammmma]a]eeeeeccc	chr18:47802960-47803265(-)$1	305	104	133	11.6838
:dddd"""a[cccmmmmccc]a333dddd	chr2:152293654-152293900(+)$1	246	106	135	11.4701
"""ggggggg[bbmmmmbb4444gggggg	chr9:136217123-136217350(+)$1	227	64	93	12.5327
=eeeee[ccc[bbmmmmbbccc]eeeee]	chr21:46494388-46494627(+)$1	239	39	68	11.4457
ccc[eeeee[cccmmmmccc22eeeee22	chr12:48183958-48184214(-)$1	256	45	74	12.3517
[eeeee[ccc!!ammmma22ccc]eeeee	chr1:28598063-28598330(+)$1	267	142	171	10.8035
:eeeee[bb[cccmmmmccc]bbeeeeeF	chr6:142539537-142539811(+)$1	274	122	151	10.9761
[hhhhhhhh[cccmmmmccchhhhhhhh]	chr9:132862805-132863055(+)$1	250	75	104	10.7751
!eeeee[ccc[bbmmmmbb]ccceeeeea	chr10:58119771-58120018(-)$1	247	135	164	11.2478
g!!ffffff[cccmmmmcccffffff22g	chr19:13059543-13059802(+)$1	259	60	89	12.1365
ddadddd"""cccmmmmccc333dddd]a	chr19:17163607-17163891(-)$1	284	140	169	12.2856
E::gggggggcccmmmmccc]ggggggg:	chr8:144902101-144902348(-)$1	247	101	130	10.2019
fffdddd"""cccmmmmccc333dddd]f	chr1:1561367-1561643(+)$1	276	226	255	12.2159
dd!!ggggggg[ammmma]ggggggg>>>	chr17:40369298-40369513(-)$1	215	145	174	11.1577
:::ccc[ccccccmmmmccc]ccc]ccc:	chr11:76076715-76077030(-)$1	315	222	251	9.7682
ffffff[ccc[aammmma]a]cccfffff	chr1:11860293-11860554(-)$1	261	211	240	11.5210
!!ggggggg!!ccclllccc]ggggggg6	chr16:53281094-53281342(+)$1	248	96	125	11.4556
2ffffffccccccmmmmccc]ccc:a[bb	chr6:109703052-109703342(-)$1	290	193	222	10.4968
fffff$$$$$cccmmmmcccffffff]ee	chr6:31603630-31603866(+)$1	236	100	129	10.9104
ii[cccbb[ddddmmmmdddd]bb]ccci	chr12:120611831-120612072(-)$1	241	107	136	9.8475
:iiiiiiiii[bbmmmmbb]iiiiiiiii	chr1:100524120-100524370(+)$1	250	184	213	11.3176
""ggggggg[cccmmmmccc]ggggggge	chr7:30614220-30614491(-)$1	271	164	193	14.1778
g:gggggggddddmmmmdddd333ggggg	chr2:153520577-153520795(-)$1	218	98	127	10.4518
ffff[dddd[cccmmmmccc]dddd]fff	chr1:2214749-2215043(+)$1	294	198	227	11.7062
ddccc[ccc[cccmmmmcccccc]ccc]d	chr17:78327324-78327566(+)$1	242	129	158	12.6468
#ccc[bb[a!!bbmmmmbb22a]bb]ccc	chr7:128488504-128488752(+)$1	248	114	143	10.7437
eeeee[ccc[cccmmmmccc]ccc]eeee	chr9:134002810-134003031(+)$1	221	74	103	13.3413
dd[ffffff!!ccclllcccffffffddd	chr5:149406575-149406841(+)$1	266	93	122	9.1162
eee[ccc!!a[bbmmmmbba333ccc]ee	chr2:99980633-99980868(+)$1	235	200	229	12.0136
g[a[eeeee[cccmmmmccc]eeeeea]g	chr6:30584869-30585105(-)$1	236	15	44	12.9948
f"""iiiiiiiiimmmmiiiiiiiii22f	chr8:56714913-56715158(+)$1	245	87	116	11.4646
cc[a[eeeee[bbmmmmbbeeeee]accc	chr21:46687308-46687558(-)$1	250	32	61	10.6463
Diiiiiiiiicccmmmmccc]iiiiiiii	chr9:133495646-133495882(+)$1	236	73	102	12.7640
""ffffff!!cccmmmmccc333ffffff	chr5:176720731-176721038(+)$1	307	74	103	13.2375
eeeee[gggggggmmmmggggggg]eeee	chr17:80050928-80051174(-)$1	246	23	52	11.3825
hhhh[dddd[cccmmmmccc22dddd]hh	chr20:46277690-46277973(+)$1	283	61	90	10.9069
b[ggggggg[cccmmmmcccggggggg]b	chr1:1560270-1560563(+)$1	293	115	144	13.4562
h!!a[ccc!!cccmmmmccc]ccc]a555	chr2:188349534-188349817(-)$1	283	206	235	11.3049
a[ggggggg[ddddlllddddggggggg]	chr16:89760340-89760666(+)$1	326	8	37	9.2945
eeegggggggcccmmmmccc]ggggggg:	chr11:65352335-65352589(+)$1	254	41	70	12.7008
::===========mmmm===========b	chr6:31937118-31937375(+)$1	257	189	218	10.7100
ccc[gggggggooooooggggggg]ccc:	chr9:139745057-139745387(+)$1	330	78	107	8.3376
ffbb[dddd[cccmmmmccc]ddddbb]f	chr17:42427035-42427301(+)$1	266	4	33	10.9877
[bb!!ccc[ddddmmmmdddd]ccc]bbe	chr15:74948090-74948363(-)$1	273	199	228	9.6431
=====[bba[cccmmmmccc]a]bb]===	chr22:36921616-36921870(-)$1	254	217	246	12.9070
ggggg!!ffffffmmmmffffff22gggg	chr19:18498936-18499294(+)$1	358	199	228	10.0467
eeeee[bb!!cccmmmmccc22bb]eeee	chr19:51302275-51302537(-)$1	262	59	88	12.1132
ffffff"""ddddmmmmdddd333fffff	chr19:40747831-40748088(-)$1	257	2	31	10.2438
cc[bbeeeeecccmmmmccc]eeeee]bb	chr16:1368159-1368418(+)$1	259	151	180	11.3627
!cccffffff[ccclllccc]ffffff44	chr6:34725272-34725497(+)$1	225	114	143	9.8871

#otherMatches

#Seq PSSM
AGGCCGCCUGUGCCUCUGCACAUGGUGUC	chr3:195701258-195701509(-)$1	251	130	159	9.9437
GUGAGAACAAGCCCAAGGGAGCAUCUAAA	chr3:184035500-184035740(+)$1	240	127	156	11.1165
GUGGUGGGGAAAGGGCUCUAAGUUGGCGA	chr19:50180457-50180672(+)$1	215	177	206	10.8022
UGUUUUAGGGCCUAAGGAGUGCCUCUAAA	chr11:5270355-5270599(-)$1	244	162	191	10.9262
UGAUUGGGGGUGCUCUUGGAGCCCCACAC	chr18:47802960-47803265(-)$1	305	104	133	11.6838
UGGAACAUCCGUUAAUCAGCAGCCCUUCC	chr2:152293654-152293900(+)$1	246	106	135	11.4701
UUGACUGCUAACCCAAGGGCUUCUGGCAG	chr9:136217123-136217350(+)$1	227	64	93	12.5327
cucggcgugcgcgcgcccggcgggccggc	chr21:46494388-46494627(+)$1	239	39	68	11.4457
CCCCUCCCUAGCCUUGAGGCCCAGGGACU	chr12:48183958-48184214(-)$1	256	45	74	12.3517
AGCCUCGAGCAGCACCUGGGGCUGGAGGC	chr1:28598063-28598330(+)$1	267	142	171	10.8035
CUUUGCUAGAGCUCAGAAGUACUGCAAAU	chr6:142539537-142539811(+)$1	274	122	151	10.9761
UUCUGAAAUGCAGUUGUUUGAUUUCAGAU	chr9:132862805-132863055(+)$1	250	75	104	10.7751
AGCUGCUCUGCAGCCAGCUUCAGGUAGCG	chr10:58119771-58120018(-)$1	247	135	164	11.2478
CGAGCCGUGGAGUAUCUGCUCACGGUGAG	chr19:13059543-13059802(+)$1	259	60	89	12.1365
CACUCAGCGCCUCCUGGGAGAACUUGAUG	chr19:17163607-17163891(-)$1	284	140	169	12.2856
UGUGGGAAGGAGGUGUCCCUCCCUUCCCC	chr8:144902101-144902348(-)$1	247	101	130	10.2019
GAGUCAUGAGACGGGCUUGUAGAGUGAGU	chr1:1561367-1561643(+)$1	276	226	255	12.2159
AAUUUUUCCCUGGUCUUUGAGGGGAACAA	chr17:40369298-40369513(-)$1	215	145	174	11.1577
UGUUGGAAGGUAUUCCUAUAUCCUGCCAC	chr11:76076715-76077030(-)$1	315	222	251	9.7682
GCUUCAACUACGCAGUGGACCUGGUGAAG	chr1:11860293-11860554(-)$1	261	211	240	11.5210
UAUUUCUUUGACAGGUGCUGAGGAGAAAA	chr16:53281094-53281342(+)$1	248	96	125	11.4556
GUCGAGGUGCCUUUUAAAAGUGCAUCGUA	chr6:109703052-109703342(-)$1	290	193	222	10.4968
UCCUCUCCUGCAGAUCUCUGGGGGAGCCA	chr6:31603630-31603866(+)$1	236	100	129	10.9104
AGCGUCAGUCAUCACGUGGUGUCUGGACC	chr12:120611831-120612072(-)$1	241	107	136	9.8475
auauguguauauauacauacauacacaua	chr1:100524120-100524370(+)$1	250	184	213	11.3176
uggauauaauaguagccauuuuuauauuu	chr7:30614220-30614491(-)$1	271	164	193	14.1778
ACUAUUAGUUCUGAUAUUAGAUUCACUAA	chr2:153520577-153520795(-)$1	218	98	127	10.4518
CAAAGCCAUCGUGCUGUCGCUGUGGAUUU	chr1:2214749-2215043(+)$1	294	198	227	11.7062
CGGAGGCAGUGAUGUAAGUUCUGGUUCUU	chr17:78327324-78327566(+)$1	242	129	158	12.6468
UUCAAGAUCAAGGUCCUCCCAGCUCAUGA	chr7:128488504-128488752(+)$1	248	114	143	10.7437
GAUCUCGUUUUGAUUCUUCACAACAGGAU	chr9:134002810-134003031(+)$1	221	74	103	13.3413
GGUGAGGUGAAGGUAAGGCCCAUUUUCCA	chr5:149406575-149406841(+)$1	266	93	122	9.1162
GAGAAGCCAGAGCCAGAGCCGAAGCUACU	chr2:99980633-99980868(+)$1	235	200	229	12.0136
UUCACUAGCACGUUUGGGCGCGUUGGGCG	chr6:30584869-30585105(-)$1	236	15	44	12.9948
UGUAUUUUAUUUUAGCUGAAGUgaaaaag	chr8:56714913-56715158(+)$1	245	87	116	11.4646
AGUGGAUCUGCGCACACGCCAGGUGCCUG	chr21:46687308-46687558(-)$1	250	32	61	10.6463
UUUUUGUUUGUGUUUAUGCAGCAAGCAAG	chr9:133495646-133495882(+)$1	236	73	102	12.7640
ACUUUUGAUUUACUUCUGUGUUUUCAGGG	chr5:176720731-176721038(+)$1	307	74	103	13.2375
UCUUGAGGCUGGGGAUGCUCAGCCCCGAG	chr17:80050928-80051174(-)$1	246	23	52	11.3825
UUGAAUCAGAGCCGACAGGCACUUGAAUU	chr20:46277690-46277973(+)$1	283	61	90	10.9069
CGGGCCGUGUGGUGGACAUCCGUGGCUGG	chr1:1560270-1560563(+)$1	293	115	144	13.4562
GUAUGGUGGAUGCCUGGGCAAUAUGAACA	chr2:188349534-188349817(-)$1	283	206	235	11.3049
CCGAGGGUCCGUGGUCCCUGCGACUCUCA	chr16:89760340-89760666(+)$1	326	8	37	9.2945
CCGGGUGGCGCGGGCCACCGCCGCCGCUG	chr11:65352335-65352589(+)$1	254	41	70	12.7008
CAGGGCUCUCAGGGACCCCUGAGGGCCUG	chr6:31937118-31937375(+)$1	257	189	218	10.7100
GCUGGAUGCCCAGAGCCGGGUAUCGGGUU	chr9:139745057-139745387(+)$1	330	78	107	8.3376
GGCAUGCGGGGAUGGCCAUCACUGCUGCC	chr17:42427035-42427301(+)$1	266	4	33	10.9877
UACCGCCAUGAUGAGAACAUCUUGGAGUC	chr15:74948090-74948363(-)$1	273	199	228	9.6431
UCUAAUGACCUUCUUCUGAAAGCUUUUUA	chr22:36921616-36921870(-)$1	254	217	246	12.9070
UCGGGCCGCCCUUCCCGAGGGGCUCCCCG	chr19:18498936-18499294(+)$1	358	199	228	10.0467
ACCUUAGUAACCCUGUUGGGGGGCGGAGG	chr19:51302275-51302537(-)$1	262	59	88	12.1132
AAGCCGUUUGGCAACAGUGUCUUUUGGUU	chr19:40747831-40748088(-)$1	257	2	31	10.2438
GACCUGGCUGUUCACUUGAGUCAGUCGAG	chr16:1368159-1368418(+)$1	259	151	180	11.3627
GGAGCGGAGAGCGGGUUCUGGUUUCUGAA	chr6:34725272-34725497(+)$1	225	114	143	9.8871

#DB
.(((.((((((((....))))).))))))	chr3:195701258-195701509(-)$1	1	130	159	9.9437
...(((.....((....))....)))...	chr3:184035500-184035740(+)$1	1	127	156	11.1165
((.((.((...((....))...)).)).)	chr19:50180457-50180672(+)$1	1	177	206	10.8022
)))((((((((((....)).))).)))))	chr11:5270355-5270599(-)$1	1	162	191	10.9262
((..(((((.(.(....).).))))))))	chr18:47802960-47803265(-)$1	1	104	133	11.6838
.((((...(.(((....))).)...))))	chr2:152293654-152293900(+)$1	1	106	135	11.4701
...(((((((.((....))....))))))	chr9:136217123-136217350(+)$1	1	64	93	12.5327
((((((.(((.((....))))).))))).	chr21:46494388-46494627(+)$1	1	39	68	11.4457
(((.(((((.(((....)))..)))))..	chr12:48183958-48184214(-)$1	1	45	74	12.3517
.(((((.(((..(....)..))).)))))	chr1:28598063-28598330(+)$1	1	142	171	10.8035
.(((((.((.(((....))).))))))))	chr6:142539537-142539811(+)$1	1	122	151	10.9761
.((((((((.(((....))))))))))).	chr9:132862805-132863055(+)$1	1	75	104	10.7751
.(((((.(((.((....)).)))))))))	chr10:58119771-58120018(-)$1	1	135	164	11.2478
(..((((((.(((....)))))))))..)	chr19:13059543-13059802(+)$1	1	60	89	12.1365
(((((((...(((....)))...)))).)	chr19:17163607-17163891(-)$1	1	140	169	12.2856
(..((((((((((....))).))))))).	chr8:144902101-144902348(-)$1	1	101	130	10.2019
(((((((...(((....)))...)))).)	chr1:1561367-1561643(+)$1	1	226	255	12.2159
((..(((((((.(....).)))))))...	chr17:40369298-40369513(-)$1	1	145	174	11.1577
...(((.((((((....))).))).))).	chr11:76076715-76077030(-)$1	1	222	251	9.7682
((((((.(((.((....).).))))))))	chr1:11860293-11860554(-)$1	1	211	240	11.5210
..(((((((..(((...))).))))))).	chr16:53281094-53281342(+)$1	1	96	125	11.4556
.))))))((((((....))).))).(.((	chr6:109703052-109703342(-)$1	1	193	222	10.4968
(((((.....(((....))))))))).))	chr6:31603630-31603866(+)$1	1	100	129	10.9104
((.(((((.((((....)))).)).))))	chr12:120611831-120612072(-)$1	1	107	136	9.8475
.(((((((((.((....)).)))))))))	chr1:100524120-100524370(+)$1	1	184	213	11.3176
..(((((((.(((....))).))))))))	chr7:30614220-30614491(-)$1	1	164	193	14.1778
).(((((((((((....))))...)))))	chr2:153520577-153520795(-)$1	1	98	127	10.4518
((((.((((.(((....))).)))).)))	chr1:2214749-2215043(+)$1	1	198	227	11.7062
(((((.(((.(((....)))))).))).)	chr17:78327324-78327566(+)$1	1	129	158	12.6468
.(((.((.(..((....))..).)).)))	chr7:128488504-128488752(+)$1	1	114	143	10.7437
(((((.(((.(((....))).))).))))	chr9:134002810-134003031(+)$1	1	74	103	13.3413
((.((((((..(((...))))))))))))	chr5:149406575-149406841(+)$1	1	93	122	9.1162
(((.(((..(.((....)))...))).))	chr2:99980633-99980868(+)$1	1	200	229	12.0136
(.(.(((((.(((....))).)))))).)	chr6:30584869-30585105(-)$1	1	15	44	12.9948
(...(((((((((....)))))))))..)	chr8:56714913-56715158(+)$1	1	87	116	11.4646
((.(.(((((.((....))))))).))))	chr21:46687308-46687558(-)$1	1	32	61	10.6463
(((((((((((((....))).))))))))	chr9:133495646-133495882(+)$1	1	73	102	12.7640
..((((((..(((....)))...))))))	chr5:176720731-176721038(+)$1	1	74	103	13.2375
(((((.(((((((....))))))).))))	chr17:80050928-80051174(-)$1	1	23	52	11.3825
((((.((((.(((....)))..)))).))	chr20:46277690-46277973(+)$1	1	61	90	10.9069
(.(((((((.(((....)))))))))).)	chr1:1560270-1560563(+)$1	1	115	144	13.4562
(..(.(((..(((....))).))).)...	chr2:188349534-188349817(-)$1	1	206	235	11.3049
(.(((((((.((((...))))))))))).	chr16:89760340-89760666(+)$1	1	8	37	9.2945
)))((((((((((....))).))))))).	chr11:65352335-65352589(+)$1	1	41	70	12.7008
..(((((((((((....)))))))))))(	chr6:31937118-31937375(+)$1	1	189	218	10.7100
(((.(((((((......))))))).))).	chr9:139745057-139745387(+)$1	1	78	107	8.3376
((((.((((.(((....))).)))))).)	chr17:42427035-42427301(+)$1	1	4	33	10.9877
.((..(((.((((....)))).))).)))	chr15:74948090-74948363(-)$1	1	199	228	9.6431
(((((.(((.(((....))).).)).)))	chr22:36921616-36921870(-)$1	1	217	246	12.9070
(((((..((((((....))))))..))))	chr19:18498936-18499294(+)$1	1	199	228	10.0467
(((((.((..(((....)))..)).))))	chr19:51302275-51302537(-)$1	1	59	88	12.1132
((((((...((((....))))...)))))	chr19:40747831-40748088(-)$1	1	2	31	10.2438
((.((((((((((....))).))))).))	chr16:1368159-1368418(+)$1	1	151	180	11.3627
.(((((((((.(((...))).))))))..	chr6:34725272-34725497(+)$1	1	114	143	9.8871

#PSSM
c : 0.12	f : 0.12	: : 0.09	e : 0.09	! : 0.07	" : 0.07	g : 0.07	d : 0.07	[ : 0.05	= : 0.03	h : 0.03	E : 0.01	2 : 0.01	i : 0.01	# : 0.01	D : 0.01	b : 0.01	a : 0.01	
c : 0.18	e : 0.16	f : 0.12	" : 0.09	d : 0.09	: : 0.07	! : 0.05	i : 0.05	[ : 0.05	h : 0.03	b : 0.01	= : 0.01	g : 0.01	
e : 0.16	c : 0.12	f : 0.12	g : 0.11	[ : 0.09	! : 0.07	" : 0.05	h : 0.03	a : 0.03	: : 0.03	i : 0.03	= : 0.03	b : 0.03	d : 0.01	
g : 0.16	e : 0.14	f : 0.14	c : 0.12	[ : 0.07	b : 0.05	! : 0.05	d : 0.05	h : 0.03	i : 0.03	a : 0.03	= : 0.03	" : 0.01	
e : 0.20	g : 0.20	f : 0.14	[ : 0.12	c : 0.09	d : 0.05	i : 0.05	b : 0.03	= : 0.03	h : 0.01	! : 0.01	
e : 0.18	g : 0.18	c : 0.12	f : 0.12	[ : 0.11	d : 0.09	i : 0.05	" : 0.01	h : 0.01	$ : 0.01	b : 0.01	= : 0.01	! : 0.01	
g : 0.20	c : 0.11	e : 0.11	[ : 0.11	b : 0.09	f : 0.09	d : 0.09	i : 0.05	$ : 0.03	" : 0.03	h : 0.01	= : 0.01	! : 0.01	
c : 0.20	g : 0.20	e : 0.11	b : 0.09	f : 0.09	" : 0.07	i : 0.05	d : 0.05	$ : 0.03	h : 0.01	[ : 0.01	! : 0.01	= : 0.01	
g : 0.20	c : 0.16	e : 0.11	" : 0.07	f : 0.07	! : 0.07	a : 0.05	i : 0.05	d : 0.05	$ : 0.03	[ : 0.03	b : 0.01	h : 0.01	= : 0.01	
[ : 0.29	c : 0.12	g : 0.11	! : 0.11	d : 0.07	e : 0.05	" : 0.05	i : 0.05	$ : 0.03	f : 0.03	a : 0.01	= : 0.01	
c : 0.49	[ : 0.14	d : 0.09	! : 0.07	g : 0.05	e : 0.01	$ : 0.01	" : 0.01	a : 0.01	i : 0.01	= : 0.01	f : 0.01	
c : 0.53	b : 0.18	d : 0.09	[ : 0.03	e : 0.01	! : 0.01	a : 0.01	i : 0.01	g : 0.01	= : 0.01	o : 0.01	f : 0.01	
c : 0.53	b : 0.18	d : 0.09	a : 0.07	e : 0.01	i : 0.01	g : 0.01	= : 0.01	o : 0.01	f : 0.01	
m : 0.90	c : 0.05	d : 0.01	o : 0.01	
m : 0.90	l : 0.07	o : 0.01	
m : 0.90	l : 0.07	o : 0.01	
m : 0.90	l : 0.07	o : 0.01	
c : 0.53	b : 0.18	d : 0.09	a : 0.07	g : 0.03	e : 0.01	i : 0.01	= : 0.01	f : 0.01	
c : 0.53	b : 0.18	d : 0.09	] : 0.05	g : 0.03	e : 0.01	2 : 0.01	i : 0.01	= : 0.01	f : 0.01	
c : 0.55	d : 0.09	] : 0.05	a : 0.05	g : 0.05	e : 0.03	4 : 0.03	2 : 0.03	3 : 0.01	i : 0.01	= : 0.01	f : 0.01	
] : 0.35	3 : 0.09	c : 0.09	d : 0.09	2 : 0.07	f : 0.07	g : 0.07	e : 0.03	4 : 0.03	i : 0.03	h : 0.01	= : 0.01	
c : 0.18	g : 0.16	3 : 0.12	e : 0.09	f : 0.09	a : 0.05	2 : 0.05	i : 0.05	4 : 0.03	] : 0.03	d : 0.03	b : 0.01	h : 0.01	= : 0.01	
c : 0.18	g : 0.16	3 : 0.12	e : 0.09	f : 0.09	] : 0.07	b : 0.07	i : 0.05	d : 0.05	4 : 0.03	h : 0.01	= : 0.01	
g : 0.18	c : 0.16	e : 0.14	b : 0.09	f : 0.09	d : 0.09	] : 0.05	3 : 0.05	i : 0.05	h : 0.01	= : 0.01	2 : 0.01	
] : 0.16	e : 0.16	g : 0.16	f : 0.12	c : 0.09	d : 0.09	i : 0.05	b : 0.03	3 : 0.01	h : 0.01	: : 0.01	= : 0.01	2 : 0.01	
e : 0.22	g : 0.18	c : 0.12	f : 0.12	d : 0.07	] : 0.07	a : 0.05	i : 0.05	b : 0.03	h : 0.01	= : 0.01	
e : 0.16	g : 0.16	c : 0.14	f : 0.09	d : 0.07	] : 0.07	b : 0.05	2 : 0.03	i : 0.03	= : 0.03	3 : 0.01	h : 0.01	> : 0.01	[ : 0.01	a : 0.01	5 : 0.01	
e : 0.18	g : 0.14	c : 0.12	] : 0.12	f : 0.07	2 : 0.05	b : 0.05	d : 0.03	h : 0.03	i : 0.03	= : 0.03	3 : 0.01	> : 0.01	5 : 0.01	4 : 0.01	
e : 0.16	f : 0.12	c : 0.09	g : 0.09	: : 0.07	b : 0.07	d : 0.05	] : 0.05	i : 0.05	a : 0.03	3 : 0.01	2 : 0.01	F : 0.01	> : 0.01	6 : 0.01	h : 0.01	5 : 0.01	= : 0.01	4 : 0.01	

#score	609.9814648266813
#seq	54
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_UTR_m3_run2.txt

#BEAR
iiiiiiiii^^^^^^^^^^^^^^^^	chrX:53221351-53221640(-)$1	289	242	267	15.3051
cciiiiiiiiissssssssssiiii	chr11:18426901-18427223(+)$1	322	140	165	17.9930
eegggggggtttttttttttggggg	chr17:8076655-8076874(-)$1	219	63	88	20.4138
bbggggggguuuuuuuuuuuugggg	chr2:27884874-27885155(-)$1	281	7	32	21.5382
ccceeeee[assssssssssaeeee	chr17:27047517-27047734(+)$1	217	127	152	20.7885
iiiieeeeeuuuuuuuuuuuueeee	chr11:122929515-122929777(-)$1	262	28	53	22.2942
ccceeeee[assssssssssaeeee	chr17:27047494-27047696(+)$1	202	150	175	20.7885

#otherMatches

#Seq PSSM
uuuuauuuuauuauuuuCCUCUUGU	chrX:53221351-53221640(-)$1	289	242	267	15.3051
GGACUCUCUGUAGCAGAUUUGGCAG	chr11:18426901-18427223(+)$1	322	140	165	17.9930
guaaucaggacuugcaacacccuga	chr17:8076655-8076874(-)$1	219	63	88	20.4138
ggcaaggaucucacauuaucagucu	chr2:27884874-27885155(-)$1	281	7	32	21.5382
GGUGGCCCACUGCAGUUCUUGGGGC	chr17:27047517-27047734(+)$1	217	127	152	20.7885
UCUUGUUUGGCUUACUGAUAACAGA	chr11:122929515-122929777(-)$1	262	28	53	22.2942
GGUGGCCCACUGCAGUUCUUGGGGC	chr17:27047494-27047696(+)$1	202	150	175	20.7885

#DB
(((((((((................	chrX:53221351-53221640(-)$1	1	242	267	15.3051
))(((((((((..........))))	chr11:18426901-18427223(+)$1	1	140	165	17.9930
))(((((((...........)))))	chr17:8076655-8076874(-)$1	1	63	88	20.4138
(((((((((............))))	chr2:27884874-27885155(-)$1	1	7	32	21.5382
)))(((((.(..........)))))	chr17:27047517-27047734(+)$1	1	127	152	20.7885
(((((((((............))))	chr11:122929515-122929777(-)$1	1	28	53	22.2942
)))(((((.(..........)))))	chr17:27047494-27047696(+)$1	1	150	175	20.7885

#PSSM
c : 0.42	i : 0.28	e : 0.14	b : 0.14	
c : 0.42	i : 0.28	e : 0.14	b : 0.14	
i : 0.42	g : 0.28	c : 0.28	
i : 0.42	g : 0.28	e : 0.28	
e : 0.42	i : 0.28	g : 0.28	
e : 0.42	i : 0.28	g : 0.28	
e : 0.42	i : 0.28	g : 0.28	
e : 0.42	i : 0.28	g : 0.28	
i : 0.28	g : 0.28	[ : 0.28	e : 0.14	
u : 0.28	a : 0.28	^ : 0.14	i : 0.14	t : 0.14	
u : 0.28	s : 0.28	^ : 0.14	i : 0.14	t : 0.14	
s : 0.42	u : 0.28	^ : 0.14	t : 0.14	
s : 0.42	u : 0.28	^ : 0.14	t : 0.14	
s : 0.42	u : 0.28	^ : 0.14	t : 0.14	
s : 0.42	u : 0.28	^ : 0.14	t : 0.14	
s : 0.42	u : 0.28	^ : 0.14	t : 0.14	
s : 0.42	u : 0.28	^ : 0.14	t : 0.14	
s : 0.42	u : 0.28	^ : 0.14	t : 0.14	
s : 0.42	u : 0.28	^ : 0.14	t : 0.14	
s : 0.42	u : 0.28	^ : 0.14	t : 0.14	
u : 0.28	a : 0.28	^ : 0.14	s : 0.14	g : 0.14	
e : 0.42	g : 0.28	^ : 0.14	i : 0.14	
e : 0.42	g : 0.28	^ : 0.14	i : 0.14	
e : 0.42	g : 0.28	^ : 0.14	i : 0.14	
e : 0.42	g : 0.28	^ : 0.14	i : 0.14	

#score	139.12165056710003
#seq	7
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_transcript_m2_run2.txt

#BEAR
dd[ffffff[bb[bb[bboooooobb]bb]bb22fffff	chr17:8369203-8369488(+)$1	285	139	178	12.9362
ffffffff[eeeee[cccooooooccceeeee4444fff	chr20:62299003-62299261(+)$1	258	194	233	15.3973
[iiiiiiiii"""eeeeeooooooeeeee4444iiiiii	chr21:45739510-45739767(+)$1	257	124	163	16.8857
eeee"""ggggggg[cccmmmmccc]ggggggg]eeeee	chr11:67048342-67048631(+)$1	289	16	55	11.8885
bb[a[ggggggg"""ccclllccc333ggggggga]bb2	chr19:2343389-2343639(+)$1	250	43	82	12.7867
gggggggggg[ddddcccooooooccc333dddd]gggg	chr17:76136705-76136970(+)$1	265	186	225	15.8658
:::ffffffccc[eeeeeooooooeeeee]ccc4444ff	chr16:2867508-2867774(+)$1	266	177	216	12.9238
iiiiiiiii"""ffffffooooooffffff333iiiiii	chr2:8869036-8869307(-)$1	271	177	216	16.6045
eeeccc[===========nnnnn===========22ccc	chr16:70287283-70287505(-)$1	222	98	137	14.3267
oobb]ffffffgggggggooooooggggggg========	chr3:42661223-42661444(+)$1	221	121	160	14.7212
ccc[ccc[a!!gggggggnnnnnggggggg22a333ccc	chrX:152936766-152937010(-)$1	244	50	89	13.6115
d!!ccc[ccc!!ccc!!bbmmmmbbccc22ccc]ccc]d	chr15:72495750-72496016(-)$1	266	65	104	11.4851
fff####ccc[ccc[ddddmmmmdddd]cccccc333ff	chr20:60897431-60897729(-)$1	298	238	277	12.1931
%dddd!!bbccc!!eeeeeooooooeeeee22ccc]bb]	chr22:49919848-49920074(-)$1	226	43	82	13.0856
gggg"""ccc####fffffflllffffff333ccc4444	chr12:110788055-110788317(+)$1	262	54	93	13.2249
cc[a[ffffff!!eeeeeooooooeeeee333ffffff]	chr17:79913358-79913632(-)$1	274	85	124	16.4844
bb"""ffffff[ffffffooooooffffffffffff444	chr19:10463294-10463562(-)$1	268	26	65	14.4109
hhhh####dddd"""cccooooooccc333dddd22hhh	chr2:183835360-183835637(-)$1	277	187	226	14.5474
dddggggggg!!ffffffooooooffffff333gggggg	chr2:97559891-97560103(-)$1	212	71	110	15.9826
ddd####ggggggg!!bboooooobb22ggggggg]ddd	chrX:47005092-47005342(+)$1	250	119	158	15.2480
dddd[a!!ffffff[cccooooooccc]ffffff333a]	chrX:48857486-48857862(-)$1	376	128	167	15.9791
cc[ffffff[ccc[eeeeeooooooeeeeecccffffff	chr20:62299676-62299958(+)$1	282	62	101	14.5507
eeiiiiiiiiibbeeeeeooooooeeeee333bb]iiii	chr19:11342371-11342687(-)$1	316	220	259	15.6678
)bbccc"""eeeee!!ccclllccc]eeeee]ccc]bb3	chr19:56182838-56183095(+)$1	257	136	175	11.5183
======"""ccc!!bb[aooooooa]bb22ccc]=====	chr19:10920681-10920892(+)$1	211	23	62	16.2827
cc"""dddd"""a[a[bboooooobb]a]a333dddd33	chr1:36788413-36788700(+)$1	287	97	136	15.4830
f!!eeeeedddd!!bb[aooooooa]bb]dddd4444ee	chr7:5568953-5569189(-)$1	236	145	184	13.4063
ffff===========ddddnnnnndddd22=========	chr1:41288039-41288303(+)$1	264	17	56	13.0620
fffff[a[a!!bb[eeeeellleeeeebb333a]a]fff	chr19:1110504-1110790(-)$1	286	129	168	12.2394
hh[ccc!!===========mmmm===========]ccch	chr19:50879809-50880075(+)$1	266	46	85	13.6573
ffff[dddd"""dddd[aooooooa]dddd333dddd]f	chr16:85690173-85690439(+)$1	266	77	116	14.1261
"""cccbbeeeee"""bboooooobb333eeeee333bb	chr22:20958300-20958638(-)$1	338	106	145	14.4283
bb[ggggggg[ffffffooooooffffff]gggggggbb	chr4:907998-908305(-)$1	307	94	133	13.9884
Bffffff[bb"""ccc[aooooooa]ccc333bb]ffff	chr6:111196888-111197170(+)$1	282	133	172	15.1656
gggggg!!ccc####cccooooooccc22cccggggggg	chr11:858473-858770(-)$1	297	151	190	16.9660
[eeeee[cccccc[ddddnnnnndddd]ccc]ccceeee	chr15:49521216-49521513(+)$1	297	215	254	11.4092
!ggggggg[eeeee!!cccmmmmccceeeee]ggggggg	chr1:227163704-227163940(+)$1	236	63	102	12.0929
cc[a[ffffff####cccnnnnnccc333ffffff]a]c	chr16:89649397-89649652(+)$1	255	43	82	13.5055
ffffff!!ccc####cccoooooocccccc]ffffffcc	chr19:15512333-15512584(-)$1	251	119	158	16.3976
iiiiiiiccc[ccceeeeeooooooeeeee]ccc333cc	chr1:988261-988583(+)$1	322	196	235	15.5721
FFdddd!!==========oooooo==========dddde	chr8:145114898-145115157(-)$1	259	35	74	15.0980
bb[ccc[ccc[gggggggooooooggggggg]ccc]ccc	chr1:156107755-156108125(+)$1	370	71	110	16.8564
ffffff"""dddd[ddddoooooodddd]dddd]fffff	chr9:139784611-139784870(+)$1	259	152	191	14.0030
===$$$$$gggggggcccooooooccc]ggggggg333=	chrX:153585402-153585650(-)$1	248	200	239	16.4491
"""ggggggg[ggggggglllgggggggggggggg22ff	chr16:385199-385460(-)$1	261	178	217	12.5815
dddd[ccc!!ccc[eeeeennnnneeeee]ccc22ccc]	chr15:72493136-72493395(-)$1	259	205	244	11.9662
ffffff[ccc[dddd[bboooooobb]dddd]ccc]fff	chr11:432062-432324(-)$1	262	149	188	15.1390
===="""eeeeeacccbboooooobb]ccc]a]eeeee2	chr19:1105749-1106004(+)$1	255	157	196	14.6119
bb[eeeee!!eeeee[bboooooobb]eeeee22eeeee	chr2:220403015-220403407(+)$1	392	319	358	13.3735
eeee!!ffffff####bboooooobb4444ffffffeee	chrX:153197487-153197807(-)$1	320	158	197	14.6339
ffffiiiiiiiii[a[bblllbba]iiiiiiiii22fff	chr16:85680112-85680368(+)$1	256	213	252	12.6706
ccca[bb[bb[bb[ddddoooooodddd]bb]bb22bb]	chr22:50020705-50020973(-)$1	268	192	231	13.0912
=!!ffffff"""ffffffooooooffffffffffff333	chr2:74259293-74259545(+)$1	252	103	142	15.3928

#otherMatches

#Seq PSSM
GGCUGGGCUGUCUGCACACGAGUCUGCGUUGAAAAGCCU	chr17:8369203-8369488(+)$1	285	139	178	12.9362
AGGUUCUCUCCUUCACGUCAGGCCAUGGGAGGCACCGAG	chr20:62299003-62299261(+)$1	258	194	233	15.3973
GCAGGCGUCCUGGCGGCCGGGUCAGGCUGGAUUGGACGU	chr21:45739510-45739767(+)$1	257	124	163	16.8857
UCCUUUAGCCCCCAGGGCCGUGGCUAUGGGGGUCAGGGC	chr11:67048342-67048631(+)$1	289	16	55	11.8885
AGGGUGGGGCUUGAAGAUUGGGUCCCAAAGCCCCCGCUG	chr19:2343389-2343639(+)$1	250	43	82	12.7867
CUCGCCACUUGUUCUCCUCACAGCAGGUUCAGGAGAAGU	chr17:76136705-76136970(+)$1	265	186	225	15.8658
GGGGACCCUGGGUGGGCAAAAACGUGCUUUCCCGGACGG	chr16:2867508-2867774(+)$1	266	177	216	12.9238
CUGUUUGUGAAAUUAAUACUAGCAUAUUAAGUGUACAAA	chr2:8869036-8869307(-)$1	271	177	216	16.6045
GGGCACAGCCCCUGCUCUGGGAAGGGGUAGGGGUGGGUG	chr16:70287283-70287505(-)$1	222	98	137	14.3267
UUUGGGGauaaauuauauuguaauauauaauuuuuaauu	chr3:42661223-42661444(+)$1	221	121	160	14.7212
GGGGGACCCUAGACAGCCGGGAAGGCUGUUGUGCCCGUU	chrX:152936766-152937010(-)$1	244	50	89	13.6115
GAGCCUGCCUAAUCAACCAGCCAUGUGAGGAGGGAGGGC	chr15:72495750-72496016(-)$1	266	65	104	11.4851
UUUCGAUGGCUGCGGGGGCUGCCGCCCGUGUGCUUGUGG	chr20:60897431-60897729(-)$1	298	238	277	12.1931
CAGAGCUUGGUGCCUGCACACACAGGUGCACACACACAC	chr22:49919848-49920074(-)$1	226	43	82	13.0856
ACCGCUUCCUAAACCAUUUUGCAGAAAUGUAAGGGUGUU	chr12:110788055-110788317(+)$1	262	54	93	13.2249
CUGGGGGUGCUGAGCUCUGAGCCUGGGGUGGGGGCACUG	chr17:79913358-79913632(-)$1	274	85	124	16.4844
CGGAUGCUGGGUAUCAUGAUAGGGCAUGAUCCCAGUGAA	chr19:10463294-10463562(-)$1	268	26	65	14.4109
agcaggcauccuuguauuguuccaaaucucaggaaaugc	chr2:183835360-183835637(-)$1	277	187	226	14.5474
CGUGGGGGAGCUGGGUAUGUUUGGGUACCCCUCCUCUcc	chr2:97559891-97560103(-)$1	212	71	110	15.9826
AGUUUGUGCAUAGGAGAGGGGAUGCUGCUCUGUGUUACU	chrX:47005092-47005342(+)$1	250	119	158	15.2480
CUCUGAGGGAGGACAGGUAAUCCAAUUGGUCCUUGAAUG	chrX:48857486-48857862(-)$1	376	128	167	15.9791
uggcuucacucacauggagcuuugauucuaguggugggg	chr20:62299676-62299958(+)$1	282	62	101	14.5507
GCUCCCCUUACCCUGCCUCUUUCCAGGUACCugguguag	chr19:11342371-11342687(-)$1	316	220	259	15.6678
AAGGGGCAUGGGGAAGGCCAACGGCAUCUCCUCUCACUG	chr19:56182838-56183095(+)$1	257	136	175	11.5183
GGCCACAUAGCCCAGCCCCGUCAUGAGCGUGGCCGUGGC	chr19:10920681-10920892(+)$1	211	23	62	16.2827
GGGAAGGGGAUGGUGGUCAGGGAAGGGUUCAGGCCCCCA	chr1:36788413-36788700(+)$1	287	97	136	15.4830
CUUUCCUUCCCAGGGCGUGAUGGUGGGCAUGGGUCAGAA	chr7:5568953-5569189(-)$1	236	145	184	13.4063
UAUCCUCCCAUCCUUCAGGUAGGUCCUGCUGGGGGUGGG	chr1:41288039-41288303(+)$1	264	17	56	13.0620
GGCUCGUGGGAACACCGGGCAUCCCGGGUGGGCGAGGGG	chr19:1110504-1110790(-)$1	286	129	168	12.2394
AGACGCAGGAGGAGCCCCGAACCCGGGGCUUCUCGGCGC	chr19:50879809-50880075(+)$1	266	46	85	13.6573
AGCUGACCCCAACCCGAGCAGGUACCUGGGCGUGGGUGG	chr16:85690173-85690439(+)$1	266	77	116	14.1261
CAUGGUCAGCAUGCAUCCGUCCCAGGCCCCAUGCAGAUG	chr22:20958300-20958638(-)$1	338	106	145	14.4283
uguguguguggggcucuguguguggggccgugcaugcug	chr4:907998-908305(-)$1	307	94	133	13.9884
CGGGAGCAGUUAUGUCGCAGUGGCGGGGCCCCACCGCUC	chr6:111196888-111197170(+)$1	282	133	172	15.1656
GCGUGUGAGCCGAAGUGCGUGUGAGCAGGGGUGCGUGUG	chr11:858473-858770(-)$1	297	151	190	16.9660
aguaucacuggucucugauuuccucagugacuuaggaua	chr15:49521216-49521513(+)$1	297	215	254	11.4092
GCUGUGGCGCUGCGAUGUUGUCUGACUGCGGGGCUGUGG	chr1:227163704-227163940(+)$1	236	63	102	12.0929
CCAGGUGGGCUCAUAGCCGAUGGGGCGGAAGUCCAGCAG	chr16:89649397-89649652(+)$1	255	43	82	13.5055
GGUGAGGGAUCCUGAGGGGCUCCACCUGAUGCUCACCCC	chr19:15512333-15512584(-)$1	251	119	158	16.3976
ugcaugugugUACUGGGGCAUCCAAGCCCCUGGUCUCCA	chr1:988261-988583(+)$1	322	196	235	15.5721
CUGGGCCUGCGGCUCUGGCUCUUCCCAGAGUCGUGCCCG	chr8:145114898-145115157(-)$1	259	35	74	15.0980
GGAGGACAGACGUGGGGCAUGCCCGCCCUGCCUCUCUCC	chr1:156107755-156108125(+)$1	370	71	110	16.8564
AGCCUGAAAAAACCAGCAGCACAUUGUUCGUUUCCAGGU	chr9:139784611-139784870(+)$1	259	152	191	14.0030
AGGCUUCCGGAGCUGAGCAUGACCGCUCCAGCUcuuccc	chrX:153585402-153585650(-)$1	248	200	239	16.4491
AGAGGCACUGGCGUGAGGGCCCCUCAUGCAGUGUCAGGC	chr16:385199-385460(-)$1	261	178	217	12.5815
GGUAACCUAGCAUGCUGUGGGGGAUAUAGGAUGAGGGGC	chr15:72493136-72493395(-)$1	259	205	244	11.9662
CAGGCUGGGGGCUCUGCCAGGACAGGGAGGGGCCUGGGC	chr11:432062-432324(-)$1	262	149	188	15.1390
GGGCGGUUGCGGGGAGGUGCUGGGACUCUCACAUCGCGU	chr19:1105749-1106004(+)$1	255	157	196	14.6119
CCAGCCCCACCCCUAGAGUCCCUUCUAUAGGGAGGGGGC	chr2:220403015-220403407(+)$1	392	319	358	13.3735
CAGGAGGAGGGGCAAGACCUGGACGUGCUACCCCUCCCU	chrX:153197487-153197807(-)$1	320	158	197	14.6339
AGUCGGGGGUGUGAGUGUGCAGCCGUGCACCCCCUGGGC	chr16:85680112-85680368(+)$1	256	213	252	12.6706
GCCCUCCUGGUGGGAGGAACUCCCUCCUGUCUCCUUGGU	chr22:50020705-50020973(-)$1	268	192	231	13.0912
UUAGCCUAUUAGACUUUUGGGGUAGGAGGUGUGGGUGAU	chr2:74259293-74259545(+)$1	252	103	142	15.3928

#DB
((.((((((.((.((.((......)).)).))..)))))	chr17:8369203-8369488(+)$1	1	139	178	12.9362
))((((((.(((((.(((......))))))))....)))	chr20:62299003-62299261(+)$1	1	194	233	15.3973
.(((((((((...(((((......)))))....))))))	chr21:45739510-45739767(+)$1	1	124	163	16.8857
((((...(((((((.(((....))).))))))).)))))	chr11:67048342-67048631(+)$1	1	16	55	11.8885
((.(.(((((((...(((...)))...)))))))).)).	chr19:2343389-2343639(+)$1	1	43	82	12.7867
)))(((((((.(((((((......)))...)))).))))	chr17:76136705-76136970(+)$1	1	186	225	15.8658
...(((((((((.(((((......))))).)))....))	chr16:2867508-2867774(+)$1	1	177	216	12.9238
(((((((((...((((((......))))))...))))))	chr2:8869036-8869307(-)$1	1	177	216	16.6045
)))(((.(((((((((((.....)))))))))))..)))	chr16:70287283-70287505(-)$1	1	98	137	14.3267
..)).))))))(((((((......)))))))((((((((	chr3:42661223-42661444(+)$1	1	121	160	14.7212
(((.(((.(..(((((((.....)))))))..)...)))	chrX:152936766-152937010(-)$1	1	50	89	13.6115
(..(((.(((..(((..((....)))))..))).))).)	chr15:72495750-72496016(-)$1	1	65	104	11.4851
(((....(((.(((.((((....)))).))))))...))	chr20:60897431-60897729(-)$1	1	238	277	12.1931
.((((..(((((..(((((......)))))..))).)).	chr22:49919848-49920074(-)$1	1	43	82	13.0856
((((...(((....((((((...))))))...)))....	chr12:110788055-110788317(+)$1	1	54	93	13.2249
((.(.((((((..(((((......)))))...)))))).	chr17:79913358-79913632(-)$1	1	85	124	16.4844
((...((((((.((((((......))))))))))))...	chr19:10463294-10463562(-)$1	1	26	65	14.4109
((((....((((...(((......)))...))))..)))	chr2:183835360-183835637(-)$1	1	187	226	14.5474
((((((((((..((((((......))))))...))))))	chr2:97559891-97560103(-)$1	1	71	110	15.9826
(((....(((((((..((......))..))))))).)))	chrX:47005092-47005342(+)$1	1	119	158	15.2480
((((.(..((((((.(((......))).))))))...).	chrX:48857486-48857862(-)$1	1	128	167	15.9791
((.((((((.(((.(((((......))))))))))))))	chr20:62299676-62299958(+)$1	1	62	101	14.5507
((((((((((((((((((......)))))...)).))))	chr19:11342371-11342687(-)$1	1	220	259	15.6678
.(((((...(((((..(((...))).))))).))).)).	chr19:56182838-56183095(+)$1	1	136	175	11.5183
((((((...(((..((.(......).))..))).)))))	chr19:10920681-10920892(+)$1	1	23	62	16.2827
((...((((...(.(.((......)).).)...))))..	chr1:36788413-36788700(+)$1	1	97	136	15.4830
(..(((((((((..((.(......).)).))))....))	chr7:5568953-5569189(-)$1	1	145	184	13.4063
))))(((((((((((((((.....))))..)))))))))	chr1:41288039-41288303(+)$1	1	17	56	13.0620
(((((.(.(..((.(((((...)))))))...).).)))	chr19:1110504-1110790(-)$1	1	129	168	12.2394
((.(((..(((((((((((....))))))))))).))))	chr19:50879809-50880075(+)$1	1	46	85	13.6573
((((.((((...((((.(......).))))...)))).)	chr16:85690173-85690439(+)$1	1	77	116	14.1261
...((((((((((...((......))...)))))...))	chr22:20958300-20958638(-)$1	1	106	145	14.4283
((.(((((((.((((((......)))))).)))))))))	chr4:907998-908305(-)$1	1	94	133	13.9884
(((((((.((...(((.(......).)))...)).))))	chr6:111196888-111197170(+)$1	1	133	172	15.1656
((((((..(((....(((......)))..))))))))))	chr11:858473-858770(-)$1	1	151	190	16.9660
.(((((.((((((.((((.....)))).))).)))))))	chr15:49521216-49521513(+)$1	1	215	254	11.4092
.(((((((.(((((..(((....)))))))).)))))))	chr1:227163704-227163940(+)$1	1	63	102	12.0929
((.(.((((((....(((.....)))...)))))).).)	chr16:89649397-89649652(+)$1	1	43	82	13.5055
((((((..(((....(((......)))))).))))))))	chr19:15512333-15512584(-)$1	1	119	158	16.3976
)))))))(((.((((((((......))))).)))...))	chr1:988261-988583(+)$1	1	196	235	15.5721
((((((..((((((((((......))))))))))))))(	chr8:145114898-145115157(-)$1	1	35	74	15.0980
((.(((.(((.(((((((......))))))).))).)))	chr1:156107755-156108125(+)$1	1	71	110	16.8564
((((((...((((.((((......)))).)))).)))))	chr9:139784611-139784870(+)$1	1	152	191	14.0030
(((.....((((((((((......))).)))))))...)	chrX:153585402-153585650(-)$1	1	200	239	16.4491
...(((((((.(((((((...))))))))))))))..))	chr16:385199-385460(-)$1	1	178	217	12.5815
((((.(((..(((.(((((.....))))).)))..))).	chr15:72493136-72493395(-)$1	1	205	244	11.9662
((((((.(((.((((.((......)).)))).))).)))	chr11:432062-432324(-)$1	1	149	188	15.1390
((((...(((((((((((......)).))).).))))).	chr19:1105749-1106004(+)$1	1	157	196	14.6119
((.(((((..(((((.((......)).)))))..)))))	chr2:220403015-220403407(+)$1	1	319	358	13.3735
((((..((((((....((......))....)))))))))	chrX:153197487-153197807(-)$1	1	158	197	14.6339
(((((((((((((.(.((...))).)))))))))..)))	chr16:85680112-85680368(+)$1	1	213	252	12.6706
((((.((.((.((.((((......)))).)).))..)).	chr22:50020705-50020973(-)$1	1	192	231	13.0912
(..((((((...((((((......))))))))))))...	chr2:74259293-74259545(+)$1	1	103	142	15.3928

#PSSM
f : 0.18	d : 0.11	c : 0.11	b : 0.09	e : 0.07	= : 0.07	g : 0.05	[ : 0.03	i : 0.03	h : 0.03	" : 0.03	: : 0.01	o : 0.01	% : 0.01	) : 0.01	B : 0.01	! : 0.01	F : 0.01	
f : 0.18	d : 0.11	b : 0.11	c : 0.11	e : 0.09	g : 0.07	i : 0.05	! : 0.05	= : 0.05	h : 0.03	" : 0.03	: : 0.01	o : 0.01	F : 0.01	
f : 0.18	[ : 0.16	d : 0.11	i : 0.07	e : 0.07	g : 0.07	" : 0.07	! : 0.05	= : 0.05	b : 0.03	c : 0.03	: : 0.01	h : 0.01	
f : 0.24	g : 0.13	c : 0.11	e : 0.09	i : 0.07	a : 0.07	d : 0.07	# : 0.03	" : 0.03	= : 0.03	b : 0.01	[ : 0.01	h : 0.01	$ : 0.01	
f : 0.18	[ : 0.13	c : 0.13	g : 0.11	i : 0.09	" : 0.09	# : 0.05	e : 0.05	d : 0.03	= : 0.03	] : 0.01	$ : 0.01	! : 0.01	
f : 0.24	c : 0.15	g : 0.13	i : 0.09	" : 0.05	# : 0.05	d : 0.05	e : 0.05	! : 0.03	= : 0.03	a : 0.01	[ : 0.01	$ : 0.01	b : 0.01	
f : 0.20	" : 0.11	g : 0.11	! : 0.11	i : 0.09	[ : 0.09	# : 0.05	c : 0.03	d : 0.03	e : 0.03	b : 0.03	= : 0.01	a : 0.01	$ : 0.01	
f : 0.18	g : 0.15	c : 0.15	! : 0.09	i : 0.07	[ : 0.07	" : 0.05	e : 0.05	= : 0.03	b : 0.03	d : 0.03	# : 0.01	$ : 0.01	
f : 0.18	c : 0.16	g : 0.15	i : 0.07	= : 0.07	d : 0.07	b : 0.05	" : 0.05	[ : 0.03	a : 0.03	e : 0.03	! : 0.03	
c : 0.22	g : 0.15	f : 0.11	e : 0.09	" : 0.07	= : 0.07	! : 0.07	i : 0.05	d : 0.05	[ : 0.03	b : 0.03	
[ : 0.15	c : 0.15	e : 0.11	" : 0.11	f : 0.11	g : 0.07	= : 0.07	! : 0.07	d : 0.05	i : 0.03	b : 0.01	# : 0.01	
g : 0.15	c : 0.15	e : 0.11	" : 0.11	d : 0.09	b : 0.07	= : 0.07	# : 0.07	! : 0.05	f : 0.05	[ : 0.01	i : 0.01	
g : 0.13	f : 0.11	c : 0.11	e : 0.09	# : 0.09	" : 0.07	d : 0.07	= : 0.07	! : 0.07	b : 0.05	[ : 0.03	a : 0.03	i : 0.01	
e : 0.15	[ : 0.15	g : 0.13	f : 0.11	c : 0.09	# : 0.09	= : 0.07	" : 0.05	d : 0.05	! : 0.05	b : 0.01	
e : 0.18	d : 0.11	f : 0.11	g : 0.09	[ : 0.07	= : 0.07	# : 0.07	b : 0.05	" : 0.05	c : 0.05	! : 0.05	a : 0.03	
c : 0.22	e : 0.16	f : 0.11	d : 0.11	[ : 0.09	g : 0.07	! : 0.07	= : 0.05	b : 0.03	" : 0.01	# : 0.01	
c : 0.22	b : 0.16	e : 0.16	f : 0.11	d : 0.09	g : 0.07	[ : 0.07	= : 0.05	! : 0.01	
c : 0.22	b : 0.18	e : 0.16	f : 0.09	d : 0.09	g : 0.07	a : 0.07	= : 0.05	o : 0.01	
o : 0.62	e : 0.09	n : 0.07	l : 0.05	d : 0.03	c : 0.03	m : 0.01	b : 0.01	f : 0.01	= : 0.01	
o : 0.67	n : 0.11	m : 0.09	l : 0.09	f : 0.01	
o : 0.67	l : 0.11	n : 0.11	m : 0.09	
o : 0.67	n : 0.11	m : 0.09	l : 0.05	c : 0.01	g : 0.01	b : 0.01	
o : 0.67	n : 0.11	m : 0.07	c : 0.05	l : 0.01	e : 0.01	g : 0.01	b : 0.01	
o : 0.66	c : 0.09	= : 0.03	g : 0.03	d : 0.03	f : 0.03	n : 0.03	b : 0.01	e : 0.01	a : 0.01	
c : 0.20	b : 0.16	e : 0.11	f : 0.11	d : 0.09	g : 0.07	a : 0.07	= : 0.05	o : 0.05	3 : 0.01	] : 0.01	
c : 0.18	e : 0.16	b : 0.15	] : 0.11	f : 0.11	d : 0.09	g : 0.07	= : 0.05	3 : 0.01	i : 0.01	
e : 0.20	c : 0.16	f : 0.11	d : 0.11	] : 0.09	g : 0.09	3 : 0.05	= : 0.05	b : 0.03	2 : 0.01	4 : 0.01	i : 0.01	
e : 0.22	g : 0.11	f : 0.11	d : 0.09	b : 0.07	3 : 0.07	c : 0.07	] : 0.07	= : 0.05	2 : 0.03	a : 0.01	4 : 0.01	i : 0.01	
e : 0.22	g : 0.15	f : 0.13	c : 0.09	3 : 0.07	2 : 0.07	] : 0.07	= : 0.05	b : 0.03	d : 0.03	4 : 0.01	i : 0.01	
e : 0.15	g : 0.15	3 : 0.13	f : 0.11	c : 0.09	] : 0.07	d : 0.07	= : 0.05	2 : 0.05	4 : 0.03	a : 0.01	i : 0.01	b : 0.01	
3 : 0.16	g : 0.15	c : 0.15	e : 0.09	d : 0.09	f : 0.09	= : 0.07	] : 0.05	b : 0.03	2 : 0.03	4 : 0.01	i : 0.01	
3 : 0.16	c : 0.15	g : 0.11	f : 0.11	] : 0.11	= : 0.09	d : 0.07	e : 0.05	2 : 0.03	b : 0.01	4 : 0.01	a : 0.01	i : 0.01	
c : 0.24	g : 0.15	f : 0.13	= : 0.09	d : 0.07	3 : 0.07	b : 0.05	2 : 0.03	4 : 0.03	a : 0.03	e : 0.01	] : 0.01	i : 0.01	
g : 0.15	c : 0.15	f : 0.15	] : 0.09	= : 0.09	d : 0.07	2 : 0.05	4 : 0.05	i : 0.05	b : 0.05	e : 0.03	3 : 0.01	
f : 0.16	c : 0.13	g : 0.13	2 : 0.09	3 : 0.09	] : 0.07	4 : 0.05	e : 0.05	= : 0.05	d : 0.05	i : 0.03	a : 0.03	
f : 0.16	] : 0.15	3 : 0.11	g : 0.09	2 : 0.09	4 : 0.07	e : 0.07	i : 0.05	= : 0.05	c : 0.05	d : 0.05	
f : 0.18	c : 0.11	3 : 0.11	e : 0.09	g : 0.09	b : 0.07	4 : 0.07	d : 0.07	i : 0.05	= : 0.05	h : 0.01	a : 0.01	2 : 0.01	
f : 0.22	c : 0.13	e : 0.11	b : 0.11	g : 0.07	i : 0.05	= : 0.05	] : 0.05	3 : 0.05	4 : 0.03	d : 0.03	h : 0.01	a : 0.01	
f : 0.22	e : 0.11	c : 0.11	] : 0.09	g : 0.07	= : 0.07	i : 0.05	3 : 0.05	2 : 0.03	d : 0.03	4 : 0.03	h : 0.03	b : 0.03	

#score	755.9778521903318
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_transcript_m3_run2.txt

#BEAR
=======nnnnn======	chr19:54697282-54697562(+)$1	280	234	252	12.4613
ddeeeeennnnneeeee]	chr20:30252335-30252566(-)$1	231	125	143	10.4298
####cccnnnnnccc444	chrX:105277219-105277535(-)$1	316	194	212	11.8653
gggggggnnnnngggggg	chr19:1397073-1397343(-)$1	270	90	108	12.4018
e[eeeeennnnneeeee]	chr1:228285797-228286043(+)$1	246	76	94	10.8500
c!!ddddnnnnndddd22	chr3:128996360-128996569(+)$1	209	2	20	10.5652
bb!!cccnnnnnccc444	chr17:78093360-78093674(+)$1	314	12	30	11.5809
=ffffffnnnnnffffff	chr4:74286727-74286932(+)$1	205	144	162	10.9979
eee[cccnnnnnccc]ee	chr6:1314396-1314710(+)$1	314	191	209	11.8442
b!!ddddnnnnndddd22	chr9:131018170-131018422(-)$1	252	132	150	10.3410
eeeee[annnnna]eeee	chr14:76117296-76117555(-)$1	259	62	80	10.5813
fff[cccnnnnnccc22f	chr6:24705122-24705389(-)$1	267	140	158	11.8480
[ccc[bbnnnnnbbccca	chr2:54896537-54896838(+)$1	301	185	203	10.4064
e"""cccnnnnnccc22e	chr4:155506410-155506669(-)$1	259	103	121	11.7918
%ffffffnnnnnffffff	chr12:104341392-104341674(+)$1	282	218	236	10.2994
Fffffffnnnnnffffff	chr7:127732064-127732325(+)$1	261	122	140	10.4377
gggggggnnnnngggggg	chr20:33590181-33590491(-)$1	310	157	175	12.4018
gggggggnnnnngggggg	chr7:134127240-134127525(-)$1	285	179	197	12.4018
ddd[cccnnnnnccc22d	chr14:39501325-39501572(-)$1	247	124	142	11.2989
$ffffffnnnnnffffff	chr7:75695567-75695891(+)$1	324	222	240	10.7676
b[eeeeennnnneeeeeb	chr21:45747024-45747308(+)$1	284	74	92	10.2804
iiiiiiinnnnniiiiii	chr1:161193063-161193272(-)$1	209	5	23	12.1302
!!ccc[annnnna]ccc]	chr5:176524659-176524952(+)$1	293	34	52	11.6481
cceeeeennnnneeeee]	chr17:42088701-42089033(-)$1	332	29	47	10.7754
iiiiiiinnnnniiiiii	chr6:41705367-41705604(-)$1	237	34	52	12.1302
"""a[bbnnnnnbb]a==	chr2:54896424-54896737(+)$1	313	280	298	10.5313
[a[ddddnnnnndddd]a	chr2:188328969-188329256(-)$1	287	42	60	10.6183
ccc[cccnnnnnccc]cc	chr12:6979475-6979818(+)$1	343	41	59	12.1112
gggggggnnnnngggggg	chr17:53470265-53470527(-)$1	262	192	210	12.4018
gggggggnnnnngggggg	chr6:41757411-41757690(+)$1	279	226	244	12.4018
ccc[cccnnnnnccc]cc	chr17:79974819-79975090(+)$1	271	58	76	12.1112
gggggggnnnnngggggg	chr16:2820932-2821171(+)$1	239	48	66	12.4018
$bb[cccnnnnnccc]bb	chrX:102632757-102632989(+)$1	232	23	41	10.9513
e!!ddddnnnnndddd22	chr2:88423954-88424181(-)$1	227	184	202	10.4970
gggggggnnnnngggggg	chr22:38202317-38202553(+)$1	236	114	132	12.4018
gggggggnnnnngggggg	chr9:33112318-33112610(-)$1	292	238	256	12.4018
eee[cccnnnnnccc22e	chr3:184052838-184053089(+)$1	251	78	96	11.7428
[ccccccnnnnnccc]cc	chr5:149826286-149826567(-)$1	281	227	245	12.0187
gggggggnnnnngggggg	chr19:40884011-40884393(+)$1	382	112	130	12.4018
=======nnnnn======	chr8:117858116-117858403(-)$1	287	197	215	12.4613
=======nnnnn======	chr20:5095661-5095888(-)$1	227	174	192	12.4613
gggggggnnnnngggggg	chr4:100003024-100003271(-)$1	247	116	134	12.4018
####cccnnnnnccc22f	chr19:54704927-54705170(+)$1	243	217	235	11.9017
cc[ddddnnnnndddd]c	chr12:106631683-106631968(-)$1	285	214	232	10.5287
cffffffnnnnnffffff	chr16:88712437-88712651(-)$1	214	58	76	10.8630
gg!!cccnnnnnccc22g	chr6:31321640-31321905(-)$1	265	188	206	12.3854
gggggggnnnnngggggg	chr2:223806602-223806887(+)$1	285	212	230	12.4018
!!eeeeennnnneeeee2	chr1:183522882-183523140(+)$1	258	193	211	10.8855
ccc[cccnnnnncccccc	chr16:67472195-67472466(-)$1	271	187	205	11.9113
[bb[cccnnnnnccc]bb	chr6:32796295-32796572(-)$1	277	187	205	11.2055
gggggggnnnnngggggg	chr1:33146041-33146305(+)$1	264	227	245	12.4018
gggggbbnnnnnbb]ggg	chr11:46765316-46765567(-)$1	251	37	55	11.0054
ddd[cccnnnnncccddd	chr17:79525699-79525985(-)$1	286	99	117	10.9674
eeeecccnnnnnccc333	chr19:14198705-14199007(-)$1	302	187	205	12.0253
[ffffffnnnnnffffff	chr10:73576684-73576948(-)$1	264	75	93	11.0218
gggggggnnnnngggggg	chr1:26144323-26144592(+)$1	269	64	82	12.4018
=======nnnnn======	chr11:252700-252998(+)$1	298	91	109	12.4613
eeeecccnnnnnccc]ee	chr20:24943708-24944003(-)$1	295	26	44	11.5967
"ffffffnnnnnffffff	chr7:128411254-128411461(+)$1	207	52	70	10.9782
gggggggnnnnngggggg	chr14:70238515-70238770(+)$1	255	122	140	12.4018
gggggggnnnnngggggg	chr17:53470245-53470465(-)$1	220	130	148	12.4018
bbccc[annnnna]ccc]	chr10:73576392-73576612(-)$1	220	47	65	10.8745
a!!ddddnnnnndddd22	chr7:72855384-72855648(-)$1	264	147	165	10.5589
a[eeeeennnnneeeee]	chr19:5691250-5691521(+)$1	271	119	137	10.9118

#otherMatches

#Seq PSSM
auguucaugauuugaaug	chr19:54697282-54697562(+)$1	280	234	252	12.4613
AGAUUGGACGGCCUGAUG	chr20:30252335-30252566(-)$1	231	125	143	10.4298
GAAGAGGCCAAUCCUAUG	chrX:105277219-105277535(-)$1	316	194	212	11.8653
AGAAGCUUUCCCGGCUUC	chr19:1397073-1397343(-)$1	270	90	108	12.4018
UUUUUAUUUAAUGUAAAU	chr1:228285797-228286043(+)$1	246	76	94	10.8500
UGUAUUGAAAAACAAUUA	chr3:128996360-128996569(+)$1	209	2	20	10.5652
CUGUGUUAAUAAGAUUGU	chr17:78093360-78093674(+)$1	314	12	30	11.5809
CGUUGGUGUAAAGCCAAC	chr4:74286727-74286932(+)$1	205	144	162	10.9979
UAUGUGGCAUUUCCAGGU	chr6:1314396-1314710(+)$1	314	191	209	11.8442
CAUACCUAGCAGAGGUUG	chr9:131018170-131018422(-)$1	252	132	150	10.3410
CAGCUGUGACCAAGGGCU	chr14:76117296-76117555(-)$1	259	62	80	10.5813
GUAAAUCUGAAUGAUCCU	chr6:24705122-24705389(-)$1	267	140	158	11.8480
AGGCCUGGUGCUCAGUCG	chr2:54896537-54896838(+)$1	301	185	203	10.4064
cuacacuuuuuuggucug	chr4:155506410-155506669(-)$1	259	103	121	11.7918
AACAUUCCUCAUGAAUGU	chr12:104341392-104341674(+)$1	282	218	236	10.2994
AAACCCCAGAGAGGGGUU	chr7:127732064-127732325(+)$1	261	122	140	10.4377
CUGCCUCUGCCUGAGGCA	chr20:33590181-33590491(-)$1	310	157	175	12.4018
GUCUAGCUUGAUGUUGGA	chr7:134127240-134127525(-)$1	285	179	197	12.4018
AUUUUGAUUUAUUCAUUA	chr14:39501325-39501572(-)$1	247	124	142	11.2989
UUGCAGAUAAACUUUGUA	chr7:75695567-75695891(+)$1	324	222	240	10.7676
CUCUACCUGGCCGGUAGG	chr21:45747024-45747308(+)$1	284	74	92	10.2804
UGAAGCCCAUUUGGCUUC	chr1:161193063-161193272(-)$1	209	5	23	12.1302
UGCAGGCACAUAGGCUGG	chr5:176524659-176524952(+)$1	293	34	52	11.6481
AGGGCUGGGAUGCGGCUA	chr17:42088701-42089033(-)$1	332	29	47	10.7754
GCAGUUUCUCGUGAACUG	chr6:41705367-41705604(-)$1	237	34	52	12.1302
ACAGGGAGGUGGUCGCUC	chr2:54896424-54896737(+)$1	313	280	298	10.5313
GAAAUGUUUAAUGCAUGU	chr2:188328969-188329256(-)$1	287	42	60	10.6183
AUUCGUGGACAUCAUCAA	chr12:6979475-6979818(+)$1	343	41	59	12.1112
UUGAUGAUAACCUUAUUA	chr17:53470265-53470527(-)$1	262	192	210	12.4018
UUUUAUUCUUUUAAUAAG	chr6:41757411-41757690(+)$1	279	226	244	12.4018
UCUGAGCCAGCUGCUGAG	chr17:79974819-79975090(+)$1	271	58	76	12.1112
AGCCCUUGGAUGGAGGGC	chr16:2820932-2821171(+)$1	239	48	66	12.4018
UACUGUGAUUCCCGCUGU	chrX:102632757-102632989(+)$1	232	23	41	10.9513
UCUGAGCGUGUGGCUCCC	chr2:88423954-88424181(-)$1	227	184	202	10.4970
GUUUGCCAUGAAGGUAGA	chr22:38202317-38202553(+)$1	236	114	132	12.4018
UCUGCACCUACUGUGCAG	chr9:33112318-33112610(-)$1	292	238	256	12.4018
GAUAUAUUAUAUAUAAAG	chr3:184052838-184053089(+)$1	251	78	96	11.7428
GGGUGGUAGAAAACCUGC	chr5:149826286-149826567(-)$1	281	227	245	12.0187
GACCCAGGUGCUCUGGGU	chr19:40884011-40884393(+)$1	382	112	130	12.4018
AACUUUUCUAAUAAAAGU	chr8:117858116-117858403(-)$1	287	197	215	12.4613
AUUUUUGUCUCUUAGAAA	chr20:5095661-5095888(-)$1	227	174	192	12.4613
UUGGUGAGGGAGUUACUA	chr4:100003024-100003271(-)$1	247	116	134	12.4018
GAUCGGUGAGUGGCCAAG	chr19:54704927-54705170(+)$1	243	217	235	11.9017
aaaaaaaaaaaGUUUUGU	chr12:106631683-106631968(-)$1	285	214	232	10.5287
CGCCGGCUUCCUGCUGGC	chr16:88712437-88712651(-)$1	214	58	76	10.8630
AUGGAUUAAUUAAAUAAG	chr6:31321640-31321905(-)$1	265	188	206	12.3854
UGAAAUUAUGUAAAUUUC	chr2:223806602-223806887(+)$1	285	212	230	12.4018
CCAUUCUGCAUGAGAAUU	chr1:183522882-183523140(+)$1	258	193	211	10.8855
CUCCUGACCCUCUUAGAG	chr16:67472195-67472466(-)$1	271	187	205	11.9113
UGGCAUAAUACAUAUAUU	chr6:32796295-32796572(-)$1	277	187	205	11.2055
GUUUUAUUUAGUAUAAAA	chr1:33146041-33146305(+)$1	264	227	245	12.4018
AACUAGAAGUCCUCAUAG	chr11:46765316-46765567(-)$1	251	37	55	11.0054
CCAUGUUUUUCUGGCUGG	chr17:79525699-79525985(-)$1	286	99	117	10.9674
CCCUGGCCUCCAGCCCCU	chr19:14198705-14199007(-)$1	302	187	205	12.0253
AUCAACCCUCUUGGUUGA	chr10:73576684-73576948(-)$1	264	75	93	11.0218
CCCCAUGCCCCUUAUGGG	chr1:26144323-26144592(+)$1	269	64	82	12.4018
UUGUGGGUCUCUCCUGCA	chr11:252700-252998(+)$1	298	91	109	12.4613
GGCCCAGGGGUGUUGAGG	chr20:24943708-24944003(-)$1	295	26	44	11.5967
CGGUCAUCUUGAAUGAUC	chr7:128411254-128411461(+)$1	207	52	70	10.9782
AAGGGUGUCCUCCACUCU	chr14:70238515-70238770(+)$1	255	122	140	12.4018
UUGAUGAUAACCUUAUUA	chr17:53470245-53470465(-)$1	220	130	148	12.4018
UCCCGUGUCUUUCCUGGU	chr10:73576392-73576612(-)$1	220	47	65	10.8745
CCACUCUCCUCUAGAGCA	chr7:72855384-72855648(-)$1	264	147	165	10.5589
GGGAGGUGUGUGGCUUUG	chr19:5691250-5691521(+)$1	271	119	137	10.9118

#DB
(((((((.....))))))	chr19:54697282-54697562(+)$1	1	234	252	12.4613
(((((((.....))))).	chr20:30252335-30252566(-)$1	1	125	143	10.4298
....(((.....)))...	chrX:105277219-105277535(-)$1	1	194	212	11.8653
(((((((.....))))))	chr19:1397073-1397343(-)$1	1	90	108	12.4018
(.(((((.....))))).	chr1:228285797-228286043(+)$1	1	76	94	10.8500
(..((((.....))))..	chr3:128996360-128996569(+)$1	1	2	20	10.5652
((..(((.....)))...	chr17:78093360-78093674(+)$1	1	12	30	11.5809
)((((((.....))))))	chr4:74286727-74286932(+)$1	1	144	162	10.9979
(((.(((.....))).))	chr6:1314396-1314710(+)$1	1	191	209	11.8442
(..((((.....))))..	chr9:131018170-131018422(-)$1	1	132	150	10.3410
(((((.(.....).))))	chr14:76117296-76117555(-)$1	1	62	80	10.5813
(((.(((.....)))..)	chr6:24705122-24705389(-)$1	1	140	158	11.8480
.(((.((.....))))))	chr2:54896537-54896838(+)$1	1	185	203	10.4064
(...(((.....)))..)	chr4:155506410-155506669(-)$1	1	103	121	11.7918
.((((((.....))))))	chr12:104341392-104341674(+)$1	1	218	236	10.2994
(((((((.....))))))	chr7:127732064-127732325(+)$1	1	122	140	10.4377
(((((((.....))))))	chr20:33590181-33590491(-)$1	1	157	175	12.4018
(((((((.....))))))	chr7:134127240-134127525(-)$1	1	179	197	12.4018
(((.(((.....)))..)	chr14:39501325-39501572(-)$1	1	124	142	11.2989
.((((((.....))))))	chr7:75695567-75695891(+)$1	1	222	240	10.7676
(.(((((.....))))))	chr21:45747024-45747308(+)$1	1	74	92	10.2804
(((((((.....))))))	chr1:161193063-161193272(-)$1	1	5	23	12.1302
..(((.(.....).))).	chr5:176524659-176524952(+)$1	1	34	52	11.6481
(((((((.....))))).	chr17:42088701-42089033(-)$1	1	29	47	10.7754
(((((((.....))))))	chr6:41705367-41705604(-)$1	1	34	52	12.1302
...(.((.....)).)))	chr2:54896424-54896737(+)$1	1	280	298	10.5313
.(.((((.....)))).)	chr2:188328969-188329256(-)$1	1	42	60	10.6183
(((.(((.....))).))	chr12:6979475-6979818(+)$1	1	41	59	12.1112
(((((((.....))))))	chr17:53470265-53470527(-)$1	1	192	210	12.4018
(((((((.....))))))	chr6:41757411-41757690(+)$1	1	226	244	12.4018
(((.(((.....))).))	chr17:79974819-79975090(+)$1	1	58	76	12.1112
(((((((.....))))))	chr16:2820932-2821171(+)$1	1	48	66	12.4018
.((.(((.....))).))	chrX:102632757-102632989(+)$1	1	23	41	10.9513
(..((((.....))))..	chr2:88423954-88424181(-)$1	1	184	202	10.4970
(((((((.....))))))	chr22:38202317-38202553(+)$1	1	114	132	12.4018
(((((((.....))))))	chr9:33112318-33112610(-)$1	1	238	256	12.4018
(((.(((.....)))..)	chr3:184052838-184053089(+)$1	1	78	96	11.7428
.((((((.....))).))	chr5:149826286-149826567(-)$1	1	227	245	12.0187
(((((((.....))))))	chr19:40884011-40884393(+)$1	1	112	130	12.4018
(((((((.....))))))	chr8:117858116-117858403(-)$1	1	197	215	12.4613
(((((((.....))))))	chr20:5095661-5095888(-)$1	1	174	192	12.4613
(((((((.....))))))	chr4:100003024-100003271(-)$1	1	116	134	12.4018
....(((.....)))..)	chr19:54704927-54705170(+)$1	1	217	235	11.9017
((.((((.....)))).)	chr12:106631683-106631968(-)$1	1	214	232	10.5287
(((((((.....))))))	chr16:88712437-88712651(-)$1	1	58	76	10.8630
((..(((.....)))..)	chr6:31321640-31321905(-)$1	1	188	206	12.3854
(((((((.....))))))	chr2:223806602-223806887(+)$1	1	212	230	12.4018
..(((((.....))))).	chr1:183522882-183523140(+)$1	1	193	211	10.8855
(((.(((.....))))))	chr16:67472195-67472466(-)$1	1	187	205	11.9113
.((.(((.....))).))	chr6:32796295-32796572(-)$1	1	187	205	11.2055
(((((((.....))))))	chr1:33146041-33146305(+)$1	1	227	245	12.4018
(((((((.....)).)))	chr11:46765316-46765567(-)$1	1	37	55	11.0054
(((.(((.....))))))	chr17:79525699-79525985(-)$1	1	99	117	10.9674
(((((((.....)))...	chr19:14198705-14199007(-)$1	1	187	205	12.0253
.((((((.....))))))	chr10:73576684-73576948(-)$1	1	75	93	11.0218
(((((((.....))))))	chr1:26144323-26144592(+)$1	1	64	82	12.4018
(((((((.....))))))	chr11:252700-252998(+)$1	1	91	109	12.4613
(((((((.....))).))	chr20:24943708-24944003(-)$1	1	26	44	11.5967
.((((((.....))))))	chr7:128411254-128411461(+)$1	1	52	70	10.9782
(((((((.....))))))	chr14:70238515-70238770(+)$1	1	122	140	12.4018
(((((((.....))))))	chr17:53470245-53470465(-)$1	1	130	148	12.4018
(((((.(.....).))).	chr10:73576392-73576612(-)$1	1	47	65	10.8745
(..((((.....))))..	chr7:72855384-72855648(-)$1	1	147	165	10.5589
(.(((((.....))))).	chr19:5691250-5691521(+)$1	1	119	137	10.9118

#PSSM
g : 0.26	e : 0.12	c : 0.10	= : 0.07	[ : 0.07	b : 0.06	d : 0.04	# : 0.03	$ : 0.03	i : 0.03	! : 0.03	" : 0.03	a : 0.03	f : 0.01	% : 0.01	F : 0.01	
g : 0.26	f : 0.12	c : 0.10	! : 0.09	e : 0.07	= : 0.06	b : 0.06	d : 0.04	[ : 0.04	# : 0.03	" : 0.03	i : 0.03	a : 0.01	
g : 0.25	e : 0.17	f : 0.12	c : 0.10	! : 0.09	= : 0.06	# : 0.03	" : 0.03	d : 0.03	i : 0.03	[ : 0.03	b : 0.03	
g : 0.25	[ : 0.15	e : 0.14	f : 0.10	d : 0.09	= : 0.06	c : 0.06	# : 0.03	! : 0.03	i : 0.03	" : 0.01	a : 0.01	
c : 0.31	g : 0.25	e : 0.10	f : 0.10	d : 0.09	= : 0.06	[ : 0.03	i : 0.03	
c : 0.28	g : 0.23	f : 0.10	e : 0.09	d : 0.09	= : 0.06	[ : 0.04	b : 0.04	i : 0.03	
c : 0.28	g : 0.23	f : 0.10	e : 0.09	d : 0.09	= : 0.06	a : 0.04	b : 0.04	i : 0.03	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
c : 0.28	g : 0.23	f : 0.10	e : 0.09	d : 0.09	= : 0.06	a : 0.04	b : 0.04	i : 0.03	
c : 0.28	g : 0.23	f : 0.10	e : 0.09	d : 0.09	= : 0.06	] : 0.04	b : 0.04	i : 0.03	
c : 0.32	g : 0.23	e : 0.10	f : 0.10	d : 0.09	= : 0.06	i : 0.03	] : 0.03	
g : 0.25	e : 0.10	d : 0.10	f : 0.10	] : 0.10	2 : 0.09	= : 0.06	c : 0.06	4 : 0.03	i : 0.03	a : 0.01	3 : 0.01	
g : 0.25	2 : 0.15	e : 0.14	f : 0.10	c : 0.10	= : 0.07	4 : 0.03	i : 0.03	] : 0.03	b : 0.03	d : 0.01	3 : 0.01	
g : 0.26	f : 0.14	] : 0.09	= : 0.07	2 : 0.07	e : 0.07	c : 0.07	b : 0.04	4 : 0.03	a : 0.03	d : 0.03	i : 0.03	3 : 0.01	

#score	738.9481296442597
#seq	64
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_transcript_m2_run1.txt

#BEAR
ee!!bb!!bb!!ddddoooooodddd22bb22bb22ee	chr20:30754555-30754858(+)$1	303	13	51	13.3154
d[a####dddd"""cccooooooccc4444dddda]dd	chr3:172114941-172115198(+)$1	257	13	51	15.6320
d"""==========ddddmmmmdddd>>>>>>>>>>>>	chr3:14183208-14183498(+)$1	290	56	94	11.8257
cc!!a!!gggggggrrrrrrrrrggggggg22a333cc	chr16:52473445-52473700(-)$1	255	58	96	12.6776
iiiiiiii!!cccssssssssssccc333iiiiiiiii	chr12:9268259-9268461(-)$1	202	20	58	11.1441
ddddggggggg[ccc[cccmmmmccc333ccc]ggggg	chr17:41622960-41623238(+)$1	278	166	204	12.1084
'''''''eeeee!!cccooooooccc22eeeeeccc33	chr8:71506640-71506905(-)$1	265	124	162	11.5232
:eeeee!!bb[ccccccooooooccc]cccbb22eeee	chr8:145066544-145066790(+)$1	246	162	200	11.7087
ddd[bba[a[a!!bb[aooooooa]bb22a]a]a]bb]	chr21:46285983-46286277(-)$1	294	10	48	12.8600
$ccc!!ffffff!!cccooooooccc4444ffffff]c	chr19:16664208-16664501(-)$1	293	87	125	14.4848
eeeeebb[==========nnnnn==========333bb	chr8:141537587-141537811(-)$1	224	33	71	13.0731
[a[iiiiiiiii!!eeeeemmmmeeeee4444iiiiii	chr4:155525246-155525519(-)$1	273	20	58	11.7617
ee$$$$$eeeee[ddddooooooddddeeeee22eeee	chrX:100646642-100646869(+)$1	227	121	159	12.7309
da!!ccc[dddd[ddddnnnnndddd]ddddccc22a:	chr4:73944438-73944695(-)$1	257	219	257	11.5351
eeee####ccc####ddddllldddd22ccc]eeeee:	chr17:40277052-40277324(-)$1	272	139	177	11.5990
$$$$$ccc[ccc!!ddddllldddd333ccc333ccc4	chr11:64571495-64571762(-)$1	267	55	93	14.0262
:eeeeeeeeeea[ddddoooooodddd]a]eeeee]ee	chr11:118967210-118967554(-)$1	344	111	149	12.0962
$$$$$ffffff[cccbboooooobb]cccffffff22d	chr11:119207787-119208054(+)$1	267	84	122	11.9241
[bb[ccc!!dddd"""cccmmmmccc22dddd22ccc]	chr10:7788561-7788766(+)$1	205	68	106	10.4004
[ccc[bb[==========mmmm==========]bb]cc	chr20:5171240-5171501(+)$1	261	103	141	12.1102
ffffccc!!ffffffcccnnnnnccc22ffffff333c	chr12:76462378-76462659(-)$1	281	190	228	11.8106
e!!ggggggg"""ccc!!bbmmmmbb333ccc333ggg	chr11:126134826-126135062(-)$1	236	54	92	11.8326
==bb[ccc[ccc[ddddnnnnndddd333ccc]ccc33	chr17:7010926-7011201(-)$1	275	91	129	13.9055
dddd"""ccc"""ddddnnnnndddd333ccc4444dd	chr2:174819605-174819857(-)$1	252	198	236	14.6665
####a[a[bb[a[bb[bboooooobb22bb]a]bb]a]	chr17:7078544-7078788(-)$1	244	153	191	13.3177
cc[ggggggg"""cccpppppppccc333ggggggg]c	chr6:145172652-145172902(+)$1	250	22	60	11.4671
occciiiiiiiiiddddoooooodddd]iiiiiiiiid	chrX:153220713-153220988(-)$1	275	135	173	14.6339
eeeee!!ffffff!!bboooooobb4444ffffff22e	chr2:85547755-85547984(-)$1	229	116	154	12.4518
f$$$$$ddddccc[bbaooooooa]bbccc]dddd22f	chr10:27406404-27406693(-)$1	289	155	193	11.6664
####aggggggg!!cccooooooccc22ggggggg]a4	chr17:70553503-70553768(-)$1	265	27	65	17.4364
c"""eeeeeccceeeeeooooooeeeee333ccc4444	chr3:110915872-110916125(+)$1	253	29	67	13.9680
==========[a!!cccooooooccc22a]========	chr17:59475870-59476135(-)$1	265	133	171	17.7989
bb[ggggggg[a[ddddooooooddddaggggggg]bb	chr19:2336623-2336863(+)$1	240	42	80	14.4030
==!!a[ggggggg[ddddllldddd]ggggggg]a22=	chr7:158158143-158158397(-)$1	254	55	93	13.3361
b####bb"""ccc[bbnnnnnbb]ccc4444bb4444b	chr2:85547890-85548107(-)$1	217	21	59	11.0050
fa!!bb"""ccc!!cccnnnnnccc]ccc333bb22a:	chr3:37903832-37904111(+)$1	279	73	111	12.7838
a"""ccc[a[a[a[a[a[annnnna]a]a]a]a]a]cc	chr16:81660210-81660524(+)$1	314	164	202	13.1422
gg"""cccxxxxxxxxxxxxxxxccc4444ggggggg:	chrM:6444-6673(+)$1	229	36	74	10.1937
eeeee!!ccc[a####cccmmmmccc22accc22eeee	chr5:36961563-36961786(+)$1	223	21	59	11.5935
"==========$$$$$bbnnnnnbb==========22b	chr6:160102061-160102320(-)$1	259	11	49	12.9272
ggg[a[eeeee####ccclllccceeeeea]ggggggg	chr11:68181170-68181420(+)$1	250	33	71	11.5963
ccc"""eeeee[ddddoooooodddd22eeeee333cc	chr16:74496411-74496628(-)$1	217	53	91	14.6837
==[================mmmm===============	chr19:18881530-18881799(+)$1	269	128	166	13.8178
$$$$ggggggg[eeeeeooooooeeeeeggggggg555	chr3:195777345-195777616(-)$1	271	137	175	11.6730
ff[ddddeeeee[ddddoooooodddd]eeeee]dddd	chr17:63534119-63534347(-)$1	228	58	96	12.0599
cc==========!!cccnnnnnccc4444=========	chr5:74076052-74076406(-)$1	354	217	255	15.8232
fff[eeeee!!bbddddnnnnndddd22bb22eeeee]	chr17:79963844-79964077(+)$1	233	60	98	10.7802
iiiii[a[a$$$$$cccooooooccc666666a]a]ii	chr19:47481629-47481931(+)$1	302	71	109	13.1728
gggggg[dddd!!ddddmmmmdddd4444dddd333gg	chr12:57005808-57006066(-)$1	258	6	44	11.7587
:================annnnna]=============	chr9:138899054-138899320(-)$1	266	19	57	13.7566
==========="""ddddmmmmdddd===========:	chr7:103180560-103180803(-)$1	243	199	237	13.5928
dd"""cccbb"""ddddnnnnnddddbb]ccc4444dd	chr1:150939461-150939714(-)$1	253	169	207	13.0755
####dddd####ffffffooooooffffff333dddd5	chr7:103112994-103113249(-)$1	255	156	194	10.5340
$$$ccc"""hhhhhhhhoooooohhhhhhhh333ccc=	chr22:51171140-51171395(+)$1	255	49	87	11.1546
ddd!!gggggggddddoooooodddd22ggggggg]dd	chr5:55247725-55247994(-)$1	269	27	65	14.4671
!bb####gggggggrrrrrrrrrggggggg22bb22dd	chr6:44222088-44222338(-)$1	250	40	78	10.8350
fdddd!!cccgggggggooooooggggggg]ccc22dd	chr1:44088524-44088775(+)$1	251	163	201	12.9411

#otherMatches

#Seq PSSM
ACAAGAGACCACAUCCACCCAGGGAUUAGGGUUCAAGU	chr20:30754555-30754858(+)$1	303	13	51	13.3154
UGUACAAGGGAGAAGAAGCCACAUUCCAAAUCUCAGGC	chr3:172114941-172115198(+)$1	257	13	51	15.6320
GACACGGGUGCCAGCCAAAAAGUUGGAGUGAAAAGACC	chr3:14183208-14183498(+)$1	290	56	94	11.8257
CGAACAUUGGGGCUCCACUGAUAAGCUCCAUGGGAACG	chr16:52473445-52473700(-)$1	255	58	96	12.6776
GGAAGAACAAACUCCUUCAUCCAAGUCUGGUUCUUCUC	chr12:9268259-9268461(-)$1	202	20	58	11.1441
GGCGAAACUUCUCCGACUCACUGGGGCGAUGGCGAGGU	chr17:41622960-41623238(+)$1	278	166	204	12.1084
UUCAUGCUUUUCCUGAACUCUACUUCCAGAAAACCAAA	chr8:71506640-71506905(-)$1	265	124	162	11.5232
CUGCAUCUUCAUCCGGAACCGCAUCCUGGAGAUCGUGU	chr8:145066544-145066790(+)$1	246	162	200	11.7087
uguguguguguguguguguuaugggauugggggaguag	chr21:46285983-46286277(-)$1	294	10	48	12.8600
CAGUGAAUGUACAACCCAGCCGAGGGGACGGUGCAUAA	chr19:16664208-16664501(-)$1	293	87	125	14.4848
CACUUGCAGAACGUGAGUAUUUCAUUUAUGUUUGAAGC	chr8:141537587-141537811(-)$1	224	33	71	13.0731
ACGUUUAAAAGACCGUUUCAAAAGAGAUUUACUUUUUU	chr4:155525246-155525519(-)$1	273	20	58	11.7617
AGCAGAGUGGCUAUGGUGGGCAAACUAAGCCGAUUUUC	chrX:100646642-100646869(+)$1	227	121	159	12.7309
CGUUCUGCACGUAUCAGGCAAACUGGAACGUCAGCUCC	chr4:73944438-73944695(-)$1	257	219	257	11.5351
GUCACCCCAACCUCUGGCUCUGAGCCCUGUUCUGACCA	chr17:40277052-40277324(-)$1	272	139	177	11.5990
CUCACCUCUACCCAAACCCUAGGUUCCCGGUCCCGAGU	chr11:64571495-64571762(-)$1	267	55	93	14.0262
AGGGUGGGAUACAGCAGCUUUUUUUGCAGUUAUCCACA	chr11:118967210-118967554(-)$1	344	111	149	12.0962
UCCUCUCUGUCUCUCCCUGGCAUGGAGAGGGCAGACUG	chr11:119207787-119208054(+)$1	267	84	122	11.9241
AGCAUGGAAGUGAAGGGGCAGAAGCUGAUCAUCACCAG	chr10:7788561-7788766(+)$1	205	68	106	10.4004
GCUUGGAGCUGCAGAAGGGUUGCCUUCUGUAGGUCGGA	chr20:5171240-5171501(+)$1	261	103	141	12.1102
UUUGCAUCCUGCACUGUUGGAGUGACUUGGUGUACUUG	chr12:76462378-76462659(-)$1	281	190	228	11.8106
UCGUGCUGGGGCCGUGGAGCAGCUGCGUACACACACCC	chr11:126134826-126135062(-)$1	236	54	92	11.8326
cgugugcgguguguguaguguguacgugugcggugugu	chr17:7010926-7011201(-)$1	275	91	129	13.9055
CUCUAUAGAUUCUGCUGGUAUACAGCUACAUCCAGGAG	chr2:174819605-174819857(-)$1	252	198	236	14.6665
ugaagguguguuguguguguagugacuguagauuaggg	chr17:7078544-7078788(-)$1	244	153	191	13.3177
UGUAUUUGUUUCCGUGAUUUGGCCACAUUAAUAAAUUC	chr6:145172652-145172902(+)$1	250	22	60	11.4671
AGGCCAGGGUGAUGUGCAGCCUGGCACUGUCACCUUGG	chrX:153220713-153220988(-)$1	275	135	173	14.6339
GAGGCCCUCAAAGCCAGGCCUCUCUAUUCCUUUGACUG	chr2:85547755-85547984(-)$1	229	116	154	12.4518
UACAAUCAUGCCACGGGGGCCAACACUUGGACAUGUAA	chr10:27406404-27406693(-)$1	289	155	193	11.6664
guguguauauguugugugugucugcguuaugugugucu	chr17:70553503-70553768(-)$1	265	27	65	17.4364
UGGAUUGGGUUCUAGGGCAAAUACCUUACAUGAAUCAU	chr3:110915872-110916125(+)$1	253	29	67	13.9680
UCUGUGCGCAGCGAGAGCUAUAACUCAAGGUGUGCACG	chr17:59475870-59476135(-)$1	265	133	171	17.7989
uaggcaugugucugcuugagugugagugugcaugugug	chr19:2336623-2336863(+)$1	240	42	80	14.4030
AUUGGGCUGCGGCUUCUCCCAGGGAUGCUGUGGGUGUG	chr7:158158143-158158397(-)$1	254	55	93	13.3361
AUUCUCUUCAUGACUUUUACUAACUCACUUCGGUCUCU	chr2:85547890-85548107(-)$1	217	21	59	11.0050
CGGAGGAGAGCGAGGCUGCCAGAGUGCGUGUGCCGACU	chr3:37903832-37904111(+)$1	279	73	111	12.7838
AGUGACAGAGAGAGAGAGAgugugugugugugugugug	chr16:81660210-81660524(+)$1	314	164	202	13.1422
GUCCUACUUCUCCUAUCUCUCCCAGUCCUAGCUGCUGG	chrM:6444-6673(+)$1	229	36	74	10.1937
GGAAUGAUGAUGUCUCAGUAUAAACUUUCUCAGAAUUC	chr5:36961563-36961786(+)$1	223	21	59	11.5935
aucagcuugcugguuuccuucucggggcgagcugggug	chr6:160102061-160102320(-)$1	259	11	49	12.9272
CUGACGCAGUACAGCGAUUAUAUCUACUGGACAGACUG	chr11:68181170-68181420(+)$1	250	33	71	11.5963
GAAUCAGGUGGAAUGUUUUGUCACAUGCUCACUGCUUU	chr16:74496411-74496628(-)$1	217	53	91	14.6837
ugggugugggugugcaugcguggguguguacauuugug	chr19:18881530-18881799(+)$1	269	128	166	13.8178
UAACACAUUAUCGGGAGCAGUGUCUUCCAUAAUGUAUA	chr3:195777345-195777616(-)$1	271	137	175	11.6730
GUCCACGGCGUGAGCGCUCGUAUGUGUAUGCGCAUGUG	chr17:63534119-63534347(-)$1	228	58	96	12.0599
GGGUAGGUUUGGAGGUGCACCCCACAAUGUUAGACCUA	chr5:74076052-74076406(-)$1	354	217	255	15.8232
uguccaugcuuggguguugugugcauguccuugcgugu	chr17:79963844-79964077(+)$1	233	60	98	10.7802
UUuguguguguguguaguggggucuguguguggggggu	chr19:47481629-47481931(+)$1	302	71	109	13.1728
UAAAGCCUAUCCUGUCCCUUUGGAUUCUAGAUAACAGC	chr12:57005808-57006066(-)$1	258	6	44	11.7587
cgcgugugugugcgcgucuguguguaugugugcacgcg	chr9:138899054-138899320(-)$1	266	19	57	13.7566
UUgagcugaauguggccuuagaaggcauuuaguucaac	chr7:103180560-103180803(-)$1	243	199	237	13.5928
GGCUUCCUCAAAUCUAGAGACCCUGGUGCAGGUUCUUC	chr1:150939461-150939714(-)$1	253	169	207	13.0755
UAAUGACAAGUGACUUAUUUGCUCAUAAGUAAAUGUCU	chr7:103112994-103113249(-)$1	255	156	194	10.5340
AUUUCUAGCuuuuuuuaauaaaauaaaaaaaaaaaGAA	chr22:51171140-51171395(+)$1	255	49	87	11.1546
GACAAGGAAAUUUUACUAGAUUGUAAAUGAUUUUCAGU	chr5:55247725-55247994(-)$1	269	27	65	14.4671
AGCCCAGGAGGCAGCCUUCCCUUUUGCCUUAAGUCACC	chr6:44222088-44222338(-)$1	250	40	78	10.8350
UGGUCCCCAGCAUUGCAGUAUGGUGUGGUGUUUGUAGG	chr1:44088524-44088775(+)$1	251	163	201	12.9411

#DB
((..((..((..((((......))))..))..))..))	chr20:30754555-30754858(+)$1	1	13	51	13.3154
(.(....((((...(((......)))....))))).))	chr3:172114941-172115198(+)$1	1	13	51	15.6320
(...((((((((((((((....))))............	chr3:14183208-14183498(+)$1	1	56	94	11.8257
((..(..(((((((.........)))))))..)...))	chr16:52473445-52473700(-)$1	1	58	96	12.6776
((((((((..(((..........)))...)))))))))	chr12:9268259-9268461(-)$1	1	20	58	11.1441
(((((((((((.(((.(((....)))...))).)))))	chr17:41622960-41623238(+)$1	1	166	204	12.1084
.......(((((..(((......)))..))))))))..	chr8:71506640-71506905(-)$1	1	124	162	11.5232
.(((((..((.((((((......))).)))))..))))	chr8:145066544-145066790(+)$1	1	162	200	11.7087
(((.(((.(.(..((.(......).))..).).).)).	chr21:46285983-46286277(-)$1	1	10	48	12.8600
.(((..((((((..(((......)))....)))))).)	chr19:16664208-16664501(-)$1	1	87	125	14.4848
(((((((.((((((((((.....))))))))))...))	chr8:141537587-141537811(-)$1	1	33	71	13.0731
.(.(((((((((..(((((....)))))....))))))	chr4:155525246-155525519(-)$1	1	20	58	11.7617
((.....(((((.((((......)))))))))..))))	chrX:100646642-100646869(+)$1	1	121	159	12.7309
)(..(((.((((.((((.....)))).)))))))..).	chr4:73944438-73944695(-)$1	1	219	257	11.5351
((((....(((....((((...))))..))).))))).	chr17:40277052-40277324(-)$1	1	139	177	11.5990
.....(((.(((..((((...))))...)))...))).	chr11:64571495-64571762(-)$1	1	55	93	14.0262
.(((((((((((.((((......)))).).))))).))	chr11:118967210-118967554(-)$1	1	111	149	12.0962
.....((((((.(((((......)).)))))))))..)	chr11:119207787-119208054(+)$1	1	84	122	11.9241
.((.(((..((((...(((....)))..))))..))).	chr10:7788561-7788766(+)$1	1	68	106	10.4004
.(((.((.((((((((((....)))))))))).)).))	chr20:5171240-5171501(+)$1	1	103	141	12.1102
(((((((..(((((((((.....)))..))))))...)	chr12:76462378-76462659(-)$1	1	190	228	11.8106
(..(((((((...(((..((....))...)))...)))	chr11:126134826-126135062(-)$1	1	54	92	11.8326
((((.(((.(((.((((.....))))...))).)))..	chr17:7010926-7011201(-)$1	1	91	129	13.9055
((((...(((...((((.....))))...)))....))	chr2:174819605-174819857(-)$1	1	198	236	14.6665
....(.(.((.(.((.((......))..)).).)).).	chr17:7078544-7078788(-)$1	1	153	191	13.3177
((.(((((((...(((.......)))...))))))).)	chr6:145172652-145172902(+)$1	1	22	60	11.4671
.)))(((((((((((((......)))).)))))))))(	chrX:153220713-153220988(-)$1	1	135	173	14.6339
(((((..((((((..((......))....))))))..)	chr2:85547755-85547984(-)$1	1	116	154	12.4518
(.....(((((((.(((......).))))).))))..)	chr10:27406404-27406693(-)$1	1	155	193	11.6664
....((((((((..(((......)))..))))))).).	chr17:70553503-70553768(-)$1	1	27	65	17.4364
(...(((((((((((((......)))))...)))....	chr3:110915872-110916125(+)$1	1	29	67	13.9680
((((((((((.(..(((......)))..).))))))))	chr17:59475870-59476135(-)$1	1	133	171	17.7989
((.(((((((.(.((((......)))))))))))).))	chr19:2336623-2336863(+)$1	1	42	80	14.4030
((..(.(((((((.((((...)))).))))))).)..)	chr7:158158143-158158397(-)$1	1	55	93	13.3361
(....((...(((.((.....)).)))....))....)	chr2:85547890-85548107(-)$1	1	21	59	11.0050
)(..((...(((..(((.....))).)))...))..).	chr3:37903832-37904111(+)$1	1	73	111	12.7838
(...(((.(.(.(.(.(.(.....).).).).).).))	chr16:81660210-81660524(+)$1	1	164	202	13.1422
((...(((...............)))....))))))).	chrM:6444-6673(+)$1	1	36	74	10.1937
(((((..(((.(....(((....)))..))))..))))	chr5:36961563-36961786(+)$1	1	21	59	11.5935
.((((((((((.....((.....))))))))))))..)	chr6:160102061-160102320(-)$1	1	11	49	12.9272
(((.(.(((((....(((...))))))))).)))))))	chr11:68181170-68181420(+)$1	1	33	71	11.5963
(((...(((((.((((......))))..)))))...))	chr16:74496411-74496628(-)$1	1	53	91	14.6837
((.((((((((((((((((....)))))))))))))))	chr19:18881530-18881799(+)$1	1	128	166	13.8178
....(((((((.(((((......))))))))))))...	chr3:195777345-195777616(-)$1	1	137	175	11.6730
((.(((((((((.((((......)))).))))).))))	chr17:63534119-63534347(-)$1	1	58	96	12.0599
))((((((((((..(((.....)))....)))))))))	chr5:74076052-74076406(-)$1	1	217	255	15.8232
(((.(((((..((((((.....))))..))..))))).	chr17:79963844-79964077(+)$1	1	60	98	10.7802
(((((.(.(.....(((......)))......).).))	chr19:47481629-47481931(+)$1	1	71	109	13.1728
((((((.((((..((((....))))....))))...))	chr12:57005808-57006066(-)$1	1	6	44	11.7587
.(((((((((((((((((.....).)))))))))))))	chr9:138899054-138899320(-)$1	1	19	57	13.7566
(((((((((((...((((....))))))))))))))).	chr7:103180560-103180803(-)$1	1	199	237	13.5928
((...(((((...((((.....)))))).)))....))	chr1:150939461-150939714(-)$1	1	169	207	13.0755
....((((....((((((......))))))...)))).	chr7:103112994-103113249(-)$1	1	156	194	10.5340
...(((...((((((((......))))))))...))))	chr22:51171140-51171395(+)$1	1	49	87	11.1546
(((..(((((((((((......))))..))))))).))	chr5:55247725-55247994(-)$1	1	27	65	14.4671
.((....(((((((.........)))))))..))..))	chr6:44222088-44222338(-)$1	1	40	78	10.8350
(((((..((((((((((......))))))).)))..))	chr1:44088524-44088775(+)$1	1	163	201	12.9411

#PSSM
d : 0.14	e : 0.12	f : 0.10	c : 0.08	$ : 0.08	= : 0.08	: : 0.05	[ : 0.05	# : 0.05	g : 0.05	i : 0.03	b : 0.03	' : 0.01	o : 0.01	a : 0.01	" : 0.01	! : 0.01	
e : 0.14	c : 0.12	= : 0.12	d : 0.10	$ : 0.08	# : 0.07	" : 0.05	a : 0.05	b : 0.05	f : 0.05	g : 0.05	i : 0.03	[ : 0.01	' : 0.01	! : 0.01	
! : 0.10	e : 0.10	$ : 0.10	" : 0.08	d : 0.08	[ : 0.08	= : 0.08	c : 0.07	# : 0.07	b : 0.05	i : 0.03	f : 0.03	g : 0.03	a : 0.01	' : 0.01	
! : 0.10	# : 0.10	" : 0.10	e : 0.10	= : 0.10	$ : 0.08	d : 0.07	[ : 0.07	c : 0.07	g : 0.07	i : 0.05	' : 0.01	f : 0.01	b : 0.01	
= : 0.12	e : 0.12	g : 0.10	a : 0.08	c : 0.08	# : 0.07	i : 0.07	$ : 0.07	" : 0.07	b : 0.05	d : 0.05	! : 0.03	[ : 0.03	' : 0.01	
c : 0.15	g : 0.14	= : 0.12	b : 0.10	! : 0.08	e : 0.07	[ : 0.07	# : 0.05	i : 0.05	$ : 0.03	" : 0.03	d : 0.03	' : 0.01	f : 0.01	
g : 0.14	c : 0.14	= : 0.12	! : 0.10	e : 0.08	# : 0.05	i : 0.05	a : 0.05	b : 0.05	" : 0.05	d : 0.05	f : 0.03	' : 0.01	$ : 0.01	[ : 0.01	
g : 0.17	e : 0.14	= : 0.12	[ : 0.12	c : 0.12	! : 0.07	d : 0.07	i : 0.05	f : 0.05	" : 0.05	# : 0.01	
g : 0.17	= : 0.15	e : 0.14	b : 0.07	d : 0.07	c : 0.07	! : 0.05	a : 0.05	f : 0.05	" : 0.05	i : 0.03	[ : 0.03	x : 0.01	# : 0.01	
g : 0.17	= : 0.15	c : 0.14	e : 0.10	d : 0.08	b : 0.07	f : 0.07	! : 0.03	[ : 0.03	i : 0.03	" : 0.01	x : 0.01	$ : 0.01	# : 0.01	h : 0.01	
= : 0.14	g : 0.14	c : 0.14	e : 0.10	[ : 0.08	d : 0.07	f : 0.07	" : 0.07	! : 0.03	a : 0.03	i : 0.03	x : 0.01	$ : 0.01	# : 0.01	h : 0.01	
c : 0.14	" : 0.10	= : 0.10	g : 0.10	[ : 0.08	a : 0.08	! : 0.05	e : 0.05	f : 0.05	# : 0.05	i : 0.03	d : 0.03	$ : 0.03	x : 0.01	b : 0.01	h : 0.01	
! : 0.17	[ : 0.12	" : 0.10	c : 0.10	= : 0.08	d : 0.07	g : 0.07	# : 0.05	f : 0.05	e : 0.03	$ : 0.03	i : 0.01	a : 0.01	x : 0.01	b : 0.01	h : 0.01	
d : 0.24	! : 0.15	= : 0.08	c : 0.08	[ : 0.07	" : 0.05	g : 0.05	# : 0.05	b : 0.03	f : 0.03	e : 0.03	$ : 0.03	s : 0.01	x : 0.01	h : 0.01	
d : 0.31	c : 0.22	b : 0.07	= : 0.07	e : 0.05	# : 0.05	r : 0.03	f : 0.03	s : 0.01	" : 0.01	! : 0.01	a : 0.01	x : 0.01	$ : 0.01	h : 0.01	g : 0.01	
d : 0.33	c : 0.22	[ : 0.07	= : 0.07	b : 0.07	e : 0.05	r : 0.03	s : 0.01	" : 0.01	x : 0.01	# : 0.01	$ : 0.01	f : 0.01	h : 0.01	g : 0.01	
d : 0.28	c : 0.24	= : 0.07	b : 0.07	o : 0.05	a : 0.05	e : 0.05	r : 0.03	s : 0.01	! : 0.01	p : 0.01	n : 0.01	x : 0.01	f : 0.01	h : 0.01	g : 0.01	
o : 0.40	n : 0.14	d : 0.08	c : 0.08	= : 0.05	r : 0.03	b : 0.03	s : 0.01	e : 0.01	! : 0.01	p : 0.01	[ : 0.01	x : 0.01	m : 0.01	a : 0.01	f : 0.01	
o : 0.43	n : 0.21	m : 0.07	c : 0.05	l : 0.05	r : 0.03	s : 0.01	e : 0.01	d : 0.01	b : 0.01	p : 0.01	a : 0.01	x : 0.01	= : 0.01	
o : 0.43	n : 0.22	m : 0.15	l : 0.07	r : 0.03	s : 0.01	b : 0.01	p : 0.01	x : 0.01	
o : 0.43	n : 0.22	m : 0.17	l : 0.07	r : 0.03	s : 0.01	p : 0.01	x : 0.01	
o : 0.43	n : 0.21	m : 0.15	d : 0.05	r : 0.03	s : 0.01	l : 0.01	p : 0.01	b : 0.01	x : 0.01	c : 0.01	
o : 0.38	d : 0.24	m : 0.10	n : 0.08	c : 0.05	r : 0.03	s : 0.01	= : 0.01	p : 0.01	b : 0.01	x : 0.01	
d : 0.33	c : 0.29	g : 0.05	a : 0.05	= : 0.05	e : 0.05	b : 0.05	o : 0.03	m : 0.01	] : 0.01	n : 0.01	h : 0.01	
d : 0.33	c : 0.29	b : 0.08	e : 0.07	g : 0.05	] : 0.05	= : 0.05	a : 0.01	f : 0.01	h : 0.01	
d : 0.28	c : 0.26	= : 0.08	b : 0.07	e : 0.07	] : 0.07	g : 0.05	4 : 0.05	3 : 0.01	f : 0.01	h : 0.01	
2 : 0.21	3 : 0.12	4 : 0.10	= : 0.10	d : 0.08	g : 0.07	e : 0.07	b : 0.05	c : 0.05	] : 0.03	> : 0.01	a : 0.01	6 : 0.01	f : 0.01	h : 0.01	
2 : 0.22	4 : 0.12	3 : 0.12	= : 0.10	e : 0.08	g : 0.07	c : 0.07	] : 0.07	> : 0.01	d : 0.01	a : 0.01	6 : 0.01	b : 0.01	f : 0.01	h : 0.01	
4 : 0.14	g : 0.14	3 : 0.12	c : 0.10	= : 0.10	e : 0.08	a : 0.07	b : 0.05	d : 0.03	f : 0.03	> : 0.01	2 : 0.01	i : 0.01	6 : 0.01	] : 0.01	h : 0.01	
c : 0.17	g : 0.15	= : 0.12	4 : 0.08	e : 0.07	f : 0.07	b : 0.05	d : 0.05	] : 0.05	i : 0.03	a : 0.03	3 : 0.03	> : 0.01	6 : 0.01	h : 0.01	
c : 0.14	= : 0.14	g : 0.12	e : 0.08	] : 0.08	2 : 0.07	d : 0.07	f : 0.07	3 : 0.05	i : 0.03	4 : 0.03	> : 0.01	b : 0.01	a : 0.01	6 : 0.01	h : 0.01	
c : 0.15	= : 0.14	g : 0.14	e : 0.08	2 : 0.07	d : 0.07	f : 0.07	3 : 0.07	i : 0.03	b : 0.03	a : 0.03	] : 0.03	> : 0.01	4 : 0.01	6 : 0.01	
g : 0.14	= : 0.12	e : 0.10	] : 0.08	b : 0.07	2 : 0.07	f : 0.07	3 : 0.07	d : 0.05	a : 0.05	i : 0.05	c : 0.05	4 : 0.03	> : 0.01	
g : 0.14	3 : 0.12	= : 0.10	b : 0.08	c : 0.08	2 : 0.07	f : 0.07	] : 0.07	d : 0.05	i : 0.05	e : 0.05	4 : 0.05	> : 0.01	a : 0.01	
g : 0.14	3 : 0.10	e : 0.10	= : 0.10	2 : 0.08	c : 0.08	a : 0.07	4 : 0.07	i : 0.05	f : 0.05	d : 0.05	b : 0.03	> : 0.01	] : 0.01	
2 : 0.17	] : 0.15	3 : 0.08	g : 0.08	c : 0.08	e : 0.08	= : 0.08	4 : 0.07	i : 0.05	d : 0.03	> : 0.01	b : 0.01	f : 0.01	5 : 0.01	
d : 0.14	e : 0.12	c : 0.12	g : 0.08	2 : 0.08	= : 0.08	i : 0.07	a : 0.07	3 : 0.05	b : 0.05	] : 0.03	4 : 0.03	> : 0.01	5 : 0.01	
d : 0.15	c : 0.12	e : 0.10	= : 0.10	: : 0.08	g : 0.07	] : 0.07	b : 0.07	i : 0.05	4 : 0.05	3 : 0.03	5 : 0.03	> : 0.01	f : 0.01	

#score	728.6024684458225
#seq	57
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_transcript_m2_run2.txt

#BEAR
======####dddd[aooooooa]dddd4444=====	chr19:583102-583341(+)$1	239	192	229	16.2518
c[ccc[gggggggrrrrrrrrrggggggg]cccccc]	chr2:101893454-101893685(-)$1	231	25	62	12.6291
gggccc[bbbb[ddddoooooodddd]bb333bb]cc	chr11:27520730-27520989(-)$1	259	56	93	12.3986
iiiiiiii[affffff[allla]ffffff4444a]ii	chr14:50052837-50053088(-)$1	251	103	140	13.6658
===========####bbmmmmbb666666========	chr20:43033651-43033925(+)$1	274	94	131	13.7614
iiiiiii[ffffffrrrrrrrrrffffff22iiiiii	chr22:20114543-20114774(+)$1	231	19	56	12.7608
gg!!dddd[ccc!!bboooooobb22ccc]dddd22g	chr17:25635602-25635828(+)$1	226	61	98	12.3397
g####a!!ccc!!cccooooooccc22ccc22a333g	chr1:8072161-8072412(-)$1	251	69	106	14.7991
cc[==========!!bbmmmmbb22==========]c	chr2:102508244-102508516(+)$1	272	104	141	16.3355
cc!!iiiiiiiii"""bblllbb]iiiiiiiii4444	chr17:18111741-18112052(+)$1	311	236	273	15.4938
ggggggg[ccc[eeeeellleeeee]ccc]ggggggg	chr18:77662400-77662655(-)$1	255	202	239	13.0155
iiiiiiiii!!ccc[bbmmmmbb]ccc22iiiiiiii	chr2:65495815-65496074(+)$1	259	206	243	14.5411
ffff============oooooo============:::	chr17:75494728-75495029(+)$1	301	189	226	15.8468
=============!!cccmmmmccc============	chr11:75283618-75283871(+)$1	253	93	130	17.8695
iiiiii!!eeeeerrrrrrrrreeeee]iiiiiiiii	chr11:65272251-65272453(+)$1	202	163	200	13.9501
ccc==========[bbqqqqqqqqbb==========:	chr4:74286708-74286911(+)$1	203	83	120	13.3633
ggggggg"""iiiiiiiiillliiiiiiiii]ggggg	chr7:98479275-98479517(+)$1	242	16	53	15.3992
ffffffeeeee"""cccnnnnnccc4444eeeee333	chr11:116945012-116945268(-)$1	256	96	133	11.8156
==========[cccnnnnnccc]==========ccc!	chr11:61188479-61188748(-)$1	269	69	106	14.3608
gggggg============mmmm============444	chr7:158158919-158159193(-)$1	274	165	202	17.4417
================oooooo===============	chr17:53354516-53354824(+)$1	308	97	134	21.0301
++++============lll============ccc]dd	chr7:30054075-30054334(-)$1	259	144	181	13.7413
[gggggggffffffrrrrrrrrrffffff333ggggg	chr2:36777953-36778224(+)$1	271	77	114	11.9900
##iiiiiiiii[bb[ccc[dddd[============a	chr16:81712512-81712784(+)$1	272	120	157	13.6021
[iiiiiiiii!!ddddooooooddddiiiiiiiii]c	chr16:18849493-18849768(-)$1	275	62	99	17.3769
c[=============annnnna]=============]	chr20:61588881-61589152(+)$1	271	185	222	18.8460
""ggggggg"""ddddoooooodddd22gggggggdd	chr2:198284723-198284986(-)$1	263	69	106	14.6084
ggggggg$$$$$ddddoooooodddd333ggggggg2	chr16:87400807-87401063(-)$1	256	19	56	14.3277
fffeeeee"""eeeeeooooooeeeee333eeeeeff	chr2:71658482-71658739(+)$1	257	39	76	12.1293
c[ccc=============lll=============333	chr11:65271976-65272203(+)$1	227	116	153	18.6943
=====!!a[bb[eeeeennnnneeeee]bb]a22===	chr12:56629398-56629657(+)$1	259	21	58	12.5451
ffffff[ggggggg[aooooooa]ggggggg]fffff	chr2:241902159-241902508(-)$1	349	82	119	13.8634
c[=============annnnna]=============]	chr20:61588952-61589200(+)$1	248	171	208	18.8460
%iiiiiiiii####ddddllldddd333iiiiiiiii	chr11:124789067-124789328(-)$1	261	128	165	15.5572
==========!!eeeeennnnneeeee==========	chr3:156869754-156869996(-)$1	242	110	147	16.9012
dd"""===========qqqqqqqq===========]d	chr16:50641618-50641911(+)$1	293	193	230	14.8139
[================mmmm================	chr20:62653265-62653551(+)$1	286	86	123	19.0252
[dddd"""==========lll==========]dddd]	chr2:208486304-208486578(-)$1	274	181	218	15.4314
e####ggggggg!!cccmmmmccc22ggggggg4444	chr14:94854729-94854973(-)$1	244	63	100	13.1640
bb[ccc!!ccc"""bboooooobb]ccc333ccc]bb	chr1:207940945-207941194(+)$1	249	41	78	13.9163
=========="""cccooooooccc55555=======	chr10:102122042-102122252(+)$1	210	163	200	15.7420
========[dddd[bbrrrrrrrrrbbdddd======	chr4:74310798-74311025(+)$1	227	40	77	13.1013
=========bb[eeeeennnnneeeee333bb]====	chr22:33260678-33260984(-)$1	306	236	273	14.5675
iiiiiiiii####cccooooooccc22iiiiiiiiid	chr12:9258230-9258495(-)$1	265	140	177	18.0889
eeeeiiiiiiiiicccqqqqqqqqccc]iiiiiiiii	chr12:3392699-3392944(+)$1	245	11	48	12.9125
iiiiiiiii####cccooooooccc22iiiiiiiiid	chr12:9258182-9258416(-)$1	234	61	98	18.0889
!dddd[eeeee[ccc"""===================	chr7:47514694-47515009(-)$1	315	20	57	12.9920
gggggggdddd"""ccclllccc333dddd]gggggg	chr13:46627549-46627763(-)$1	214	81	118	12.8063
"""dddd==========lll==========]dddd33	chr7:6502280-6502531(-)$1	251	193	230	15.4450
=========[gggggggmmmmggggggg]========	chr2:241900745-241901019(-)$1	274	107	144	16.3484
"ffffff!!ccc!!bboooooobb22ccc]ffffff3	chr20:31606893-31607124(+)$1	231	102	139	12.6610

#otherMatches

#Seq PSSM
CCCUCCUUGUCUGUGCAUCCGGGGGCAGCUCUGGAGG	chr19:583102-583341(+)$1	239	192	229	16.2518
UUGAACUAAAGGACAUUUUAUUUUUUUUACUUUAGCA	chr2:101893454-101893685(-)$1	231	25	62	12.6291
AGAUCAACUCCUCUCUGUUAAUGGAGUGGUAAGGAUG	chr11:27520730-27520989(-)$1	259	56	93	12.3986
AUUUUGGGGAAGCGUUGCCGUGGAGCGCUAGGCUGCU	chr14:50052837-50053088(-)$1	251	103	140	13.6658
agcgugugugcgugugugugGACUGUGUGGCACACAC	chr20:43033651-43033925(+)$1	274	94	131	13.7614
GGAGAAGCAAUAAAUCGUCUUAuuuuauuuucuuuuc	chr22:20114543-20114774(+)$1	231	19	56	12.7608
GUGAUUAUCUCAAAGGGAGAUGCCAAUGGAGUAACAA	chr17:25635602-25635828(+)$1	226	61	98	12.3397
UGUGGUUUUGCUUUUUUUUUUUAGACUGUAUUAAUAA	chr1:8072161-8072412(-)$1	251	69	106	14.7991
GGGUCCCAUUUUGUUUCUUUGGAUUUGGGGUGGGGGU	chr2:102508244-102508516(+)$1	272	104	141	16.3355
CAGUAGAGGUGGUGGAGCAGAGCAGCCAUCUUUUAAG	chr17:18111741-18112052(+)$1	311	236	273	15.4938
GACUUGGAAUCAAUAAACCAUUUGUGGAUCCUGAGUU	chr18:77662400-77662655(-)$1	255	202	239	13.0155
GUUAAAUUUUUGUUAAUGUGGGUAAAUCUGAGUUUAA	chr2:65495815-65496074(+)$1	259	206	243	14.5411
GGCCGCGGCCUCCCCGAGGUUGUGGGGAGGCUGCACU	chr17:75494728-75495029(+)$1	301	189	226	15.8468
UCUUCCUUUUUUAGUUCUUCAAAGAUAGGGAGGGAAG	chr11:75283618-75283871(+)$1	253	93	130	17.8695
UCUUUCAGAUGGUAUUCUUCAGACUAUAGAAGGAGCU	chr11:65272251-65272453(+)$1	202	163	200	13.9501
GUCCUUUUGUUUUUCAGCCUACCAUGAGAAUAAGAGA	chr4:74286708-74286911(+)$1	203	83	120	13.3633
UCAUUUUCCUUUUCUCUACCUUGUAGAGAAGCAAAGU	chr7:98479275-98479517(+)$1	242	16	53	15.3992
UUUAUCACUUcauaacuaguaaaguggcagaaguaga	chr11:116945012-116945268(-)$1	256	96	133	11.8156
AGAAAGCAAUGAUUAAGUGGGUAGUUGCUUUUUCUGC	chr11:61188479-61188748(-)$1	269	69	106	14.3608
CUGUGGGUGUGUGUGUGCAUUUGCACACGUGCAUUGG	chr7:158158919-158159193(-)$1	274	165	202	17.4417
gugugugugugugugugugugugcgcgcgcaugugua	chr17:53354516-53354824(+)$1	308	97	134	21.0301
CCAUUUCUUUCUGAUAAGUUAUUGGGAAGAAAAAGCU	chr7:30054075-30054334(-)$1	259	144	181	13.7413
UGuaaauuuuuuuauuauuauuuuaaaGAUAUGAUUU	chr2:36777953-36778224(+)$1	271	77	114	11.9900
AUACAUCUGCCAGGGUGUGCAGGAGCACAGGGGUGCC	chr16:81712512-81712784(+)$1	272	120	157	13.6021
AGGUGUAUUUAGGCUUUCAUGUGAGCAGGUAUGCUGU	chr16:18849493-18849768(-)$1	275	62	99	17.3769
cgugcaugcgugcaccugugugugugugcguguguaa	chr20:61588881-61589152(+)$1	271	185	222	18.8460
ACGCAAAGGGUUAAAGGUUUUACUUUUACUUUUGUUU	chr2:198284723-198284986(-)$1	263	69	106	14.6084
CCCCUGGGAAUCUUGAUGUGCUUCAGUGGUCGGGGGU	chr16:87400807-87401063(-)$1	256	19	56	14.3277
UCUUCAGGCAAAUCAGUGGCGUCUGAUGUCCCUGAGG	chr2:71658482-71658739(+)$1	257	39	76	12.1293
UGGUGGGAGGGGACUGAAGCCUUUAGUCUUUUCCAGA	chr11:65271976-65272203(+)$1	227	116	153	18.6943
GCCUCUUCCUGCUCUUUGUGCUGGAGAACAUGCUGGG	chr12:56629398-56629657(+)$1	259	21	58	12.5451
UCCUUCCCCCGUUGGCAUGGGAGGCAGUGGGAGGAGG	chr2:241902159-241902508(-)$1	349	82	119	13.8634
cgugcaugcgugcaccugugugugugugcgugugcaa	chr20:61588952-61589200(+)$1	248	171	208	18.8460
uagcauccagcagagugccuagcacauacuggaugcu	chr11:124789067-124789328(-)$1	261	128	165	15.5572
AAUAAUGAGAUAAGUUUGUUUGGGGCUUUUCGUUGUU	chr3:156869754-156869996(-)$1	242	110	147	16.9012
CCCUCGCUAACUUGACAUCUCCUGGUCAGGUUGGUUG	chr16:50641618-50641911(+)$1	293	193	230	14.8139
ugugugugugugugugugCAUGCACGUAUGCAUAUGC	chr20:62653265-62653551(+)$1	286	86	123	19.0252
GGGCCAACUGCUGGGGUUCUUAACUCCAGUGAGGCUA	chr2:208486304-208486578(-)$1	274	181	218	15.4314
UGGGACAGUGAAUCGUAAGUAUGCCUUUCACUGCGAG	chr14:94854729-94854973(-)$1	244	63	100	13.1640
AGUCAUUCAGGUUUAGUAGCUUCUUCCUUAUAUGUCU	chr1:207940945-207941194(+)$1	249	41	78	13.9163
GUUAGGAAUCUCUUCACUACCCUGAUUCUUGAUUCCU	chr10:102122042-102122252(+)$1	210	163	200	15.7420
GGUGAAGAGUCUUGCUUCUUAAAAUAGAAGAUUUUCA	chr4:74310798-74311025(+)$1	227	40	77	13.1013
CUGGAUUUCCUAAGGGAAGUCGUCUCUCCAGGUGAAA	chr22:33260678-33260984(-)$1	306	236	273	14.5675
AGUAUAUUUACACUAUUUUUCUAUAACAAGUAUAUUU	chr12:9258230-9258495(-)$1	265	140	177	18.0889
GGGGCGGGGGUCUGCCGGCCUCUGGGCAAGGCCCCUG	chr12:3392699-3392944(+)$1	245	11	48	12.9125
AGUAUAUUUACACUAUUUUUCUAUAACAAGUAUAUUU	chr12:9258182-9258416(-)$1	234	61	98	18.0889
GCCUGCACUCACGCUGUGAUUGUUCUUGCUUGGCCUU	chr7:47514694-47515009(-)$1	315	20	57	12.9920
UAUCAAAUUAUUUUUAAGUUUUAUCCGUAGUUUUGAU	chr13:46627549-46627763(-)$1	214	81	118	12.8063
CACUAUAUUUAUUUUUUGGCAAAAGAUGAGCUGUAUU	chr7:6502280-6502531(-)$1	251	193	230	15.4450
gcauguaugugugugcacgucuguaugccugugcaug	chr2:241900745-241901019(-)$1	274	107	144	16.3484
CUGCUGGCUCUUAUCUGUCCCAAGUGAAGUUCAGCAU	chr20:31606893-31607124(+)$1	231	102	139	12.6610

#DB
((((((....((((.(......).))))....)))))	chr19:583102-583341(+)$1	1	192	229	16.2518
(.(((.(((((((.........))))))).)))))).	chr2:101893454-101893685(-)$1	1	25	62	12.6291
((((((.((((.((((......)))).))...)).))	chr11:27520730-27520989(-)$1	1	56	93	12.3986
((((((((.(((((((.(...).))))))....).))	chr14:50052837-50053088(-)$1	1	103	140	13.6658
(((((((((((....((....))......))))))))	chr20:43033651-43033925(+)$1	1	94	131	13.7614
(((((((.((((((.........))))))..))))))	chr22:20114543-20114774(+)$1	1	19	56	12.7608
((..((((.(((..((......))..))).))))..)	chr17:25635602-25635828(+)$1	1	61	98	12.3397
(....(..(((..(((......)))..)))..)...)	chr1:8072161-8072412(-)$1	1	69	106	14.7991
((.((((((((((..((....))..)))))))))).)	chr2:102508244-102508516(+)$1	1	104	141	16.3355
((..(((((((((...((...)).)))))))))....	chr17:18111741-18112052(+)$1	1	236	273	15.4938
(((((((.(((.(((((...))))).))).)))))))	chr18:77662400-77662655(-)$1	1	202	239	13.0155
(((((((((..(((.((....)).)))..))))))))	chr2:65495815-65496074(+)$1	1	206	243	14.5411
))))((((((((((((......))))))))))))...	chr17:75494728-75495029(+)$1	1	189	226	15.8468
(((((((((((((..(((....)))))))))))))))	chr11:75283618-75283871(+)$1	1	93	130	17.8695
((((((..(((((.........))))).)))))))))	chr11:65272251-65272453(+)$1	1	163	200	13.9501
)))((((((((((.((........)))))))))))).	chr4:74286708-74286911(+)$1	1	83	120	13.3633
(((((((...(((((((((...))))))))).)))))	chr7:98479275-98479517(+)$1	1	16	53	15.3992
(((((((((((...(((.....)))....)))))...	chr11:116945012-116945268(-)$1	1	96	133	11.8156
((((((((((.(((.....))).))))))))))(((.	chr11:61188479-61188748(-)$1	1	69	106	14.3608
((((((((((((((((((....))))))))))))...	chr7:158158919-158159193(-)$1	1	165	202	17.4417
((((((((((((((((......)))))))))))))))	chr17:53354516-53354824(+)$1	1	97	134	21.0301
....((((((((((((...))))))))))))))).))	chr7:30054075-30054334(-)$1	1	144	181	13.7413
.(((((((((((((.........))))))...)))))	chr2:36777953-36778224(+)$1	1	77	114	11.9900
..(((((((((.((.(((.((((.(((((((((((((	chr16:81712512-81712784(+)$1	1	120	157	13.6021
.(((((((((..((((......))))))))))))).)	chr16:18849493-18849768(-)$1	1	62	99	17.3769
(.((((((((((((((.....).))))))))))))).	chr20:61588881-61589152(+)$1	1	185	222	18.8460
..(((((((...((((......))))..)))))))))	chr2:198284723-198284986(-)$1	1	69	106	14.6084
(((((((.....((((......))))...))))))).	chr16:87400807-87401063(-)$1	1	19	56	14.3277
)))(((((...(((((......)))))...)))))((	chr2:71658482-71658739(+)$1	1	39	76	12.1293
(.((((((((((((((((...)))))))))))))...	chr11:65271976-65272203(+)$1	1	116	153	18.6943
(((((..(.((.(((((.....))))).)).)..)))	chr12:56629398-56629657(+)$1	1	21	58	12.5451
((((((.(((((((.(......).))))))).)))))	chr2:241902159-241902508(-)$1	1	82	119	13.8634
(.((((((((((((((.....).))))))))))))).	chr20:61588952-61589200(+)$1	1	171	208	18.8460
.(((((((((....((((...))))...)))))))))	chr11:124789067-124789328(-)$1	1	128	165	15.5572
((((((((((..(((((.....)))))))))))))))	chr3:156869754-156869996(-)$1	1	110	147	16.9012
((...(((((((((((........))))))))))).)	chr16:50641618-50641911(+)$1	1	193	230	14.8139
.((((((((((((((((....))))))))))))))))	chr20:62653265-62653551(+)$1	1	86	123	19.0252
.((((...((((((((((...)))))))))).)))).	chr2:208486304-208486578(-)$1	1	181	218	15.4314
(....(((((((..(((....)))..)))))))....	chr14:94854729-94854973(-)$1	1	63	100	13.1640
((.(((..(((...((......)).)))...))).))	chr1:207940945-207941194(+)$1	1	41	78	13.9163
((((((((((...(((......))).....)))))))	chr10:102122042-102122252(+)$1	1	163	200	15.7420
((((((((.((((.((.........))))))))))))	chr4:74310798-74311025(+)$1	1	40	77	13.1013
(((((((((((.(((((.....)))))...)).))))	chr22:33260678-33260984(-)$1	1	236	273	14.5675
(((((((((....(((......)))..))))))))))	chr12:9258230-9258495(-)$1	1	140	177	18.0889
((((((((((((((((........))).)))))))))	chr12:3392699-3392944(+)$1	1	11	48	12.9125
(((((((((....(((......)))..))))))))))	chr12:9258182-9258416(-)$1	1	61	98	18.0889
.((((.(((((.(((...(((((((((((((((((((	chr7:47514694-47515009(-)$1	1	20	57	12.9920
(((((((((((...(((...)))...)))).))))))	chr13:46627549-46627763(-)$1	1	81	118	12.8063
...((((((((((((((...)))))))))).))))..	chr7:6502280-6502531(-)$1	1	193	230	15.4450
(((((((((.(((((((....))))))).))))))))	chr2:241900745-241901019(-)$1	1	107	144	16.3484
.((((((..(((..((......))..))).)))))).	chr20:31606893-31607124(+)$1	1	102	139	12.6610

#PSSM
= : 0.21	g : 0.15	c : 0.13	i : 0.11	f : 0.07	[ : 0.07	" : 0.05	e : 0.03	+ : 0.01	# : 0.01	% : 0.01	d : 0.01	b : 0.01	! : 0.01	
= : 0.23	g : 0.15	i : 0.15	f : 0.09	[ : 0.07	# : 0.05	c : 0.05	d : 0.05	" : 0.03	+ : 0.01	b : 0.01	e : 0.01	
= : 0.27	i : 0.17	g : 0.15	f : 0.09	c : 0.05	! : 0.03	# : 0.03	[ : 0.03	" : 0.03	d : 0.03	+ : 0.01	e : 0.01	
= : 0.31	i : 0.17	g : 0.13	c : 0.07	f : 0.07	d : 0.05	! : 0.03	# : 0.03	e : 0.03	+ : 0.01	" : 0.01	
= : 0.35	i : 0.21	g : 0.13	c : 0.07	d : 0.07	f : 0.05	# : 0.03	e : 0.01	" : 0.01	
= : 0.37	i : 0.21	g : 0.15	f : 0.05	[ : 0.03	c : 0.03	d : 0.03	a : 0.01	e : 0.01	! : 0.01	" : 0.01	
= : 0.37	i : 0.19	g : 0.15	! : 0.07	e : 0.05	[ : 0.03	d : 0.03	# : 0.01	" : 0.01	f : 0.01	
= : 0.39	i : 0.17	g : 0.09	! : 0.07	e : 0.05	[ : 0.03	d : 0.03	" : 0.03	# : 0.01	b : 0.01	$ : 0.01	a : 0.01	
= : 0.39	i : 0.15	g : 0.07	[ : 0.07	c : 0.05	e : 0.05	f : 0.03	" : 0.03	# : 0.01	b : 0.01	$ : 0.01	d : 0.01	! : 0.01	
= : 0.35	c : 0.09	i : 0.09	# : 0.05	g : 0.05	b : 0.05	e : 0.05	" : 0.05	f : 0.03	d : 0.03	a : 0.01	! : 0.01	$ : 0.01	[ : 0.01	
= : 0.29	c : 0.09	g : 0.07	i : 0.07	d : 0.05	b : 0.05	f : 0.05	! : 0.05	e : 0.05	" : 0.05	# : 0.05	[ : 0.01	$ : 0.01	
= : 0.27	[ : 0.11	" : 0.09	g : 0.07	# : 0.07	c : 0.07	f : 0.05	! : 0.05	i : 0.05	d : 0.03	e : 0.03	$ : 0.01	
= : 0.27	d : 0.11	e : 0.11	# : 0.07	! : 0.07	" : 0.07	g : 0.05	f : 0.05	i : 0.05	c : 0.05	b : 0.01	
= : 0.21	c : 0.15	d : 0.09	! : 0.09	e : 0.09	" : 0.07	f : 0.05	r : 0.03	# : 0.03	[ : 0.03	g : 0.03	i : 0.01	b : 0.01	
= : 0.21	c : 0.17	d : 0.09	b : 0.09	e : 0.09	[ : 0.07	r : 0.07	! : 0.03	f : 0.01	# : 0.01	" : 0.01	i : 0.01	n : 0.01	g : 0.01	
c : 0.19	= : 0.17	b : 0.15	d : 0.09	e : 0.09	a : 0.07	r : 0.07	" : 0.03	f : 0.01	i : 0.01	n : 0.01	g : 0.01	
o : 0.31	r : 0.09	c : 0.09	= : 0.09	b : 0.07	e : 0.07	q : 0.05	n : 0.05	[ : 0.01	i : 0.01	l : 0.01	d : 0.01	" : 0.01	g : 0.01	
o : 0.31	n : 0.13	m : 0.11	r : 0.09	l : 0.07	q : 0.05	= : 0.05	c : 0.03	a : 0.01	b : 0.01	i : 0.01	d : 0.01	" : 0.01	
o : 0.31	l : 0.17	m : 0.15	n : 0.13	r : 0.09	q : 0.05	i : 0.01	[ : 0.01	= : 0.01	
o : 0.31	l : 0.17	m : 0.15	n : 0.11	r : 0.09	q : 0.05	= : 0.03	c : 0.01	d : 0.01	
o : 0.31	m : 0.15	l : 0.11	n : 0.11	r : 0.09	q : 0.05	= : 0.05	c : 0.03	e : 0.01	d : 0.01	
o : 0.31	= : 0.11	r : 0.09	b : 0.07	n : 0.07	a : 0.05	q : 0.05	c : 0.05	m : 0.03	d : 0.03	e : 0.01	l : 0.01	g : 0.01	
= : 0.17	c : 0.15	b : 0.13	d : 0.11	e : 0.11	] : 0.07	r : 0.05	q : 0.05	a : 0.03	g : 0.03	i : 0.01	
= : 0.23	c : 0.13	e : 0.11	d : 0.09	] : 0.07	f : 0.05	b : 0.05	q : 0.05	g : 0.03	6 : 0.01	2 : 0.01	i : 0.01	[ : 0.01	r : 0.01	3 : 0.01	
= : 0.27	c : 0.15	d : 0.11	e : 0.11	2 : 0.07	g : 0.05	f : 0.05	i : 0.03	6 : 0.01	b : 0.01	] : 0.01	r : 0.01	3 : 0.01	
= : 0.31	2 : 0.11	d : 0.09	e : 0.09	g : 0.05	f : 0.05	c : 0.05	i : 0.03	b : 0.03	3 : 0.03	6 : 0.01	] : 0.01	4 : 0.01	5 : 0.01	
= : 0.33	c : 0.11	e : 0.09	g : 0.07	2 : 0.07	f : 0.05	i : 0.05	d : 0.03	3 : 0.03	] : 0.01	6 : 0.01	4 : 0.01	5 : 0.01	b : 0.01	
= : 0.35	c : 0.09	i : 0.09	g : 0.07	3 : 0.07	d : 0.05	f : 0.05	] : 0.05	2 : 0.03	b : 0.01	6 : 0.01	4 : 0.01	5 : 0.01	
= : 0.35	i : 0.15	g : 0.07	c : 0.07	3 : 0.07	f : 0.05	4 : 0.03	b : 0.03	d : 0.03	6 : 0.01	2 : 0.01	5 : 0.01	] : 0.01	
= : 0.39	i : 0.17	3 : 0.09	] : 0.07	g : 0.07	4 : 0.03	d : 0.03	2 : 0.01	c : 0.01	e : 0.01	b : 0.01	5 : 0.01	
= : 0.39	i : 0.17	g : 0.09	3 : 0.05	] : 0.05	4 : 0.03	2 : 0.03	d : 0.03	e : 0.03	c : 0.01	b : 0.01	f : 0.01	
= : 0.37	i : 0.17	g : 0.09	c : 0.05	] : 0.05	4 : 0.03	3 : 0.03	d : 0.03	e : 0.03	2 : 0.01	a : 0.01	b : 0.01	f : 0.01	
= : 0.39	i : 0.17	g : 0.13	c : 0.05	d : 0.05	e : 0.03	f : 0.03	b : 0.01	4 : 0.01	a : 0.01	2 : 0.01	] : 0.01	
= : 0.39	i : 0.15	g : 0.11	c : 0.07	d : 0.05	4 : 0.03	e : 0.03	f : 0.03	b : 0.01	a : 0.01	3 : 0.01	2 : 0.01	
= : 0.35	i : 0.15	g : 0.11	] : 0.07	3 : 0.05	4 : 0.05	c : 0.03	f : 0.03	d : 0.03	2 : 0.01	: : 0.01	e : 0.01	
= : 0.31	i : 0.15	g : 0.09	3 : 0.07	c : 0.05	] : 0.05	4 : 0.05	d : 0.05	f : 0.05	2 : 0.01	: : 0.01	b : 0.01	
= : 0.23	i : 0.11	g : 0.11	d : 0.09	] : 0.07	3 : 0.07	c : 0.05	4 : 0.05	: : 0.03	f : 0.03	! : 0.01	a : 0.01	2 : 0.01	b : 0.01	

#score	761.2053036983532
#seq	51
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_CDS_m1_run2.txt

#BEAR
hh[a!!eeeee[cccddddnnnnndddd333ccc]eeeee	chr16:46918504-46918752(+)$1	248	188	228	13.8179
ccc[ccc"""iiiiiiiiinnnnniiiiiiiiiccc333c	chr2:120128212-120128479(+)$1	267	36	76	15.4006
##hhhhhhhh"""ccc[bbnnnnnbbccc]hhhhhhhh44	chr16:24741065-24741276(+)$1	211	145	185	12.6244
a!!ccc!!iiiiiiiii[annnnna]iiiiiiiiiccc22	chr22:36685150-36685424(-)$1	274	77	117	15.9166
gg[dddd!!ffffff[cccnnnnncccffffff22ddddg	chr20:40143362-40143652(-)$1	290	8	48	12.0106
dccc[ffffff"""cccrrrrrrrrrccc22ffffff]cc	chr1:16482276-16482659(-)$1	383	130	170	12.5754
ccc"""ddddccc"""bboooooobb4444ccc]dddd33	chr17:37054565-37054878(+)$1	313	79	119	14.3857
[dddd!!bbbb$$$$$cccooooooccc333bb]bb4444	chr12:76449712-76450044(-)$1	332	12	52	14.5092
!!a"""bbdddd!!bb[a[aooooooa]a]bb22dddd]b	chr17:79827603-79827920(-)$1	317	220	260	11.8775
eeeee[ccc[bb!!eeeeennnnneeeee22bbccc]eee	chr20:25371096-25371506(-)$1	410	45	85	13.5237
eeeeebb!!ffffff[cccnnnnnccc4444ffffff22b	chr22:36681610-36681839(-)$1	229	160	200	13.4218
a[ccc!!dddd"""cccrrrrrrrrrccc22ddddccc]a	chr20:278121-278416(+)$1	295	233	273	13.7802
!a!!eeeee"""ccc[ccclllccc]ccc333eeeee22a	chr12:133067139-133067463(+)$1	324	250	290	13.5300
!!ccc[ddddggggggg[bbmmmmbb4444ggggggg333	chr1:146756899-146757194(+)$1	295	114	154	12.6361
ccc[bb[ffffff[ccccccooooooccc22cccffffff	chr9:6645323-6645591(-)$1	268	137	177	12.4612
ggccc[ccc[iiiiiiiiinnnnniiiiiiiii]cccccc	chr6:52132622-52132867(-)$1	245	30	70	14.7924
ddd!!ccc"""gggggggrrrrrrrrrggggggg]ccc22	chr1:205687317-205687708(-)$1	391	6	46	12.1383
a[dddd!!eeeee[cccrrrrrrrrrccc22eeeee]ddd	chr3:184040252-184040524(+)$1	272	7	47	11.3789
'''ccc!!bb$$$$$cccooooooccc4444bb22ccccc	chr7:134632375-134632621(+)$1	246	118	158	12.5467
####ccc[ccc!!bb[a[annnnna]a]bb22cccccc33	chr15:72501951-72502233(-)$1	282	195	235	15.7272
ccc[a[ccc[bb"""ddddnnnnndddd]bbccc]a]ccc	chr19:55628673-55629013(-)$1	340	89	129	14.0200
ee####ggggggg[eeeeeooooooeeeeeggggggg333	chr9:131356406-131356693(+)$1	287	103	143	13.4601
iiiiiii[ccc"""bb[bbmmmmbb]bb333ccc22iiii	chr12:121416352-121416650(+)$1	298	156	196	12.7745
ccbb[ccc[===========mmmm===========]ccc]	chr9:117053029-117053295(+)$1	266	35	75	12.8249
ggg####eeeeebba!!cccooooooccc22a]bb]eeee	chr2:232577051-232577316(+)$1	265	177	217	12.2329
!bb[dddd[bb$$$$$cccnnnnnccc333bb]dddd22b	chr14:23790895-23791131(+)$1	236	114	154	13.8847
ccc[bbccc[bb####cccnnnnnccc4444bbccc]bb2	chr11:118919429-118919699(-)$1	270	49	89	15.4677
accc[ggggggg!!bb!!cccnnnnnccc22bb]gggggg	chr16:448868-449139(+)$1	271	28	68	13.0338
ddd==========[a[eeeeellleeeeea]=========	chr15:90328470-90328821(-)$1	351	71	111	13.0841
bdddd"""ggggggg!!ddddmmmmdddd22ggggggg22	chr20:39766141-39766435(+)$1	294	88	128	10.8672
g"""ccc[ccc"""a[cccmmmmccca333ccc]cccggg	chr2:75061566-75061824(+)$1	258	165	205	14.7850
ff!!iiiiiiiii####bboooooobb333iiiiiiiii3	chr14:102496064-102496345(+)$1	281	80	120	15.4835
!ccc!!bb[bb[eeeee[annnnna]eeeee]bbbbccc2	chr6:114180844-114181108(+)$1	264	70	110	12.2907
dccc####dddd"""eeeeemmmmeeeee22dddd333cc	chr17:27420233-27420531(-)$1	298	241	281	11.7760
[ccc[ccccccdddd[bbnnnnnbbdddd22ccc]ccc]c	chr19:531688-532046(+)$1	358	128	168	12.7611
============"""bb[annnnna]bb333=========	chr16:22385523-22385861(-)$1	338	171	211	17.5160
!eeeee"""ccc!!ccc[ccclllccc333ccc22ccc22	chr9:128000817-128001117(-)$1	300	89	129	14.5582
ggg[bb####ccc[ccc[bbnnnnnbb333ccc]cccbb]	chr4:76580159-76580533(-)$1	374	200	240	13.5286
ddd"""dddd!!a!!a[cccmmmmccc]a22a22dddd55	chr12:19592828-19593136(+)$1	308	251	291	11.6472
fffff[a[bbccc[a[ccclllccc]a]ccc]bb]a]fff	chr10:88854294-88854545(-)$1	251	199	239	11.6406
!dddd!!ffffff[a[ccclllccc]affffffdddd22c	chr20:3175857-3176095(-)$1	238	73	113	11.2806
[bb[a[ddddeeeeecccooooooccc4444eeeee22dd	chr22:36684266-36684560(-)$1	294	81	121	12.0059
eeeee[ggggggg[a!!bbnnnnnbb333a]gggggggee	chr9:117063626-117063842(+)$1	216	133	173	14.7724
dd!!cccdddd####bb[bblllbbbb333dddd]ccc22	chr20:43029842-43030139(+)$1	297	156	196	12.8958
dd[ccc[bbccc[ccc[bbnnnnnbbccc]ccc22bb]cc	chr2:11484087-11484356(-)$1	269	203	243	13.2303
eeeee[adddd####ddddoooooodddd4444dddd22a	chr6:158402917-158403199(+)$1	282	58	98	13.2835
ggggggg[bb$$$$$ddddnnnnnddddbbgggggggddd	chr10:105614882-105615357(-)$1	475	16	56	12.2909
eeee[dddd"""ddddrrrrrrrrrdddd22dddd333ee	chr1:93307233-93307511(+)$1	278	226	266	10.4504
cc[bbccc[a[bb[eeeeennnnneeeee333bb]a]ccc	chr5:154173255-154173513(+)$1	258	165	205	13.5084
dddd[bb[a[dddd!!cccnnnnncccdddd]abb]dddd	chr20:3175781-3176029(-)$1	248	126	166	11.8914
dddd!!ccc####ccc!!bblllbb22ccc4444ccc444	chr22:19166061-19166345(-)$1	284	138	178	12.7890
============!!a[a[annnnna]a]a22=========	chr21:34143592-34143958(-)$1	366	77	117	18.1249
fff[bb[eeeee[bb[cccnnnnnccc]bb]eeeeebb]f	chr2:97482321-97482585(+)$1	264	58	98	11.8436
eeeebb[ccc####eeeeennnnneeeeecccbb]eeeee	chr17:37358579-37358790(+)$1	211	149	189	12.6165
ff[dddd[bb####cccrrrrrrrrrccc333bb]dddd2	chr20:40141384-40141687(-)$1	303	121	161	12.8951
!!ccc####cccdddd!!annnnna22dddd]ccc4444c	chr12:124885029-124885320(-)$1	291	215	255	13.4430
eeee[ggggggg"""a[bbmmmmbb]a]ggggggg]eeee	chr19:1020848-1021214(-)$1	366	248	288	11.5801
[a[===========cccrrrrrrrrrccc]==========	chr20:42086679-42086903(+)$1	224	103	143	14.1018

#otherMatches

#Seq PSSM
CAGCCAGAGCAGCGCGGCCGCCGAGGCCUCGGCGGUGCUC	chr16:46918504-46918752(+)$1	248	188	228	13.8179
AGAAGGUUGAUCAAGUUCUCCAUUAGAAUUUGAACCAGAU	chr2:120128212-120128479(+)$1	267	36	76	15.4006
GCGCUGCCGCAGGGCCCGCAACCCgcggcggcggcagcag	chr16:24741065-24741276(+)$1	211	145	185	12.6244
CCAGCUCCUGGCGGAGGAGAAGACCAUCUCUGCCAAGUAU	chr22:36685150-36685424(-)$1	274	77	117	15.9166
AUCUUAGUUUUAAAAACUGCCCAACAGUUUUAAUUCUGAA	chr20:40143362-40143652(-)$1	290	8	48	12.0106
CGCAGGCCGGCGGGCGGGAGCGGACACCGAGGCCGGCGUG	chr1:16482276-16482659(-)$1	383	130	170	12.5754
CUCUUCCUCCCCUCCUGCAGGUGCGCUACAAGGAGGAGUU	chr17:37054565-37054878(+)$1	313	79	119	14.3857
GGUGACUGUGCUUUUUGGUUUUUAUACCUUUGCUACUUUA	chr12:76449712-76450044(-)$1	332	12	52	14.5092
AGGAGAUCCAGGAGCUGGACAAGGACGACGAGAGCCUGCG	chr17:79827603-79827920(-)$1	317	220	260	11.8775
GGGCUGGGAUGUGAGGAGCGGCGGGUUCCGGGCUCCGGGC	chr20:25371096-25371506(-)$1	410	45	85	13.5237
CUGGGCUCUGGCUGGAGCCACCACGGCAGAGCUGGCCUUG	chr22:36681610-36681839(-)$1	229	160	200	13.4218
UGGUGAAGAAUCUAGCCGAGAAGAAGGGCGAAUUCCGCGA	chr20:278121-278416(+)$1	295	233	273	13.7802
GGAGGAGGUCAUCGACGGCUUCGCCAUCGCCAGCUUCAGC	chr12:133067139-133067463(+)$1	324	250	290	13.5300
GCCUUGUGGAGGGAUCUACCAAAAGGAAGCGGGUUCUGAG	chr1:146756899-146757194(+)$1	295	114	154	12.6361
gucgggggcggccgccgccUGGCUGGGGGAUCGGGGCCGU	chr9:6645323-6645591(-)$1	268	137	177	12.4612
CUGGGAGUUCUUGAUGCAGUUCCCCUGCAUCAGUGACCCC	chr6:52132622-52132867(-)$1	245	30	70	14.7924
AGAUUUUAUUCUUACAGAUUGUUGUAUUUUGUAGCUGACU	chr1:205687317-205687708(-)$1	391	6	46	12.1383
GGGGAGAGGGCCAAGUUGAGGUAUGGAGCAGUGGUCAUUC	chr3:184040252-184040524(+)$1	272	7	47	11.3789
gaagCCGAUCGAAAACUCAGAGAGGAGGUAAGGCGGGCGC	chr7:134632375-134632621(+)$1	246	118	158	12.5467
AUUUCUCUCCAGGUGAAGCAGAAAGGUACGUAUGGGAGCU	chr15:72501951-72502233(-)$1	282	195	235	15.7272
GGCGGGCGGUGCGAUGUCCGGAGAGGAUGGCCcggcggcu	chr19:55628673-55629013(-)$1	340	89	129	14.0200
GCAAGAAGUUUAUGUUGUUCCGUGAAGCGAAUGAACUACA	chr9:131356406-131356693(+)$1	287	103	143	13.4601
ACGCGGUGGGGGAGGCGGCUAGCGUGGUGGACCCGGGCCG	chr12:121416352-121416650(+)$1	298	156	196	12.7745
CCUCCUCUGCCUGCUUUCUUAACAGGGGGAGCAGGGAGAC	chr9:117053029-117053295(+)$1	266	35	75	12.8249
GGGUUCUGGCUUGAGAAGAAGGGGGGUUUGGCAUCUGGGU	chr2:232577051-232577316(+)$1	265	177	217	12.2329
ACGGCGCCAUUGAGGACCCGGUGAgggaaggagggcgagc	chr14:23790895-23791131(+)$1	236	114	154	13.8847
GAAUGUAGGAGGGCAGAGGCUUUUCCUGACACCCCUGACU	chr11:118919429-118919699(-)$1	270	49	89	15.4677
GCCUGGUGACCCCUGGGCUCUGGCUGGGAAACCCGGGUCG	chr16:448868-449139(+)$1	271	28	68	13.0338
CUUUUGUUUUUCUGGCAGCUGGAGCAGUUCAAGAAGGACA	chr15:90328470-90328821(-)$1	351	71	111	13.0841
UUGCUCCCGGGCGGUCCUGGCCUGUGCCGCCGCCGCCCCC	chr20:39766141-39766435(+)$1	294	88	128	10.8672
UACUUCUUCACGGAGCUCAACCAUGACCAAGUGCAGAAGG	chr2:75061566-75061824(+)$1	258	165	205	14.7850
UUGCUCUUUAGGUAGAAGAACUGCGUCGUGACUUGAGGAU	chr14:102496064-102496345(+)$1	281	80	120	15.4835
CGCCAAGGAGGAGCUGCAGGCCAACGGCAGCGCCCCGGCC	chr6:114180844-114181108(+)$1	264	70	110	12.2907
CCUGAGGAGUGGGGAUCCUAGGGAUGGGGAGCCACGAACA	chr17:27420233-27420531(-)$1	298	241	281	11.7760
aggcggcggccccgguggcUCCCCCCCGGACGGUGCGCGG	chr19:531688-532046(+)$1	358	128	168	12.7611
GGGGCAGCGGCUGAGGCGGGACGGCGGCGGGGGCCGCUGC	chr16:22385523-22385861(-)$1	338	171	211	17.5160
AUUGUUCUUGUUGGUGGCUCGACUCGAAUUCCAAAGAUUC	chr9:128000817-128001117(-)$1	300	89	129	14.5582
GAGAAGAACUUAGAAGAACUAGAGGAGAAAUCUACUACUC	chr4:76580159-76580533(-)$1	374	200	240	13.5286
cggggauggggacggcaaggagggccuggaggagcccaag	chr12:19592828-19593136(+)$1	308	251	291	11.6472
GAGGACGACCCCAACUUCUUCAAGAUGGUGGAGGGCUUCU	chr10:88854294-88854545(-)$1	251	199	239	11.6406
ACUUUUGCCUCCUAUGUCCACAGGAGGAGGAGGAGAGGAA	chr20:3175857-3176095(-)$1	238	73	113	11.2806
GUUGAUGUUCCUUCCCCCAGGUGCGGGAGAUGGAGGCAGA	chr22:36684266-36684560(-)$1	294	81	121	12.0059
GAGGGCUGUGGGGCGGGGCGUGGGGCGGGCACCCUGCAUU	chr9:117063626-117063842(+)$1	216	133	173	14.7724
UGGAGGCAGGGAGAAUGCGACUCUCCAAAACCCUCGUCGA	chr20:43029842-43030139(+)$1	297	156	196	12.8958
CUCGCUCCCCCAUCAACGUGGAGAGCUUGCUGGUAGGUGG	chr2:11484087-11484356(-)$1	269	203	243	13.2303
GCAGUGGGCCCGACCCUCAUGGCCCUGAGCAAAGGGCUGC	chr6:158402917-158403199(+)$1	282	58	98	13.2835
CUCCGCCAGUUCCCGCCGGACCCACcgggcggcggagaga	chr10:105614882-105615357(-)$1	475	16	56	12.2909
AUAAACUUAUGAACAGCAACUAUUUCUGUGUUAAGCUCUU	chr1:93307233-93307511(+)$1	278	226	266	10.4504
CAAACCGGAGCCUGCCUGGCACGACCAGGAUGAGACAUCG	chr5:154173255-154173513(+)$1	258	165	205	13.5084
GUAGGAGAGACCAUGACUGAGGAACAGGUGGGCCUGCUGC	chr20:3175781-3176029(-)$1	248	126	166	11.8914
gcgccccgccucccgcccgccaugcccgcgccccgcgccc	chr22:19166061-19166345(-)$1	284	138	178	12.7890
GCCGCCGCCGGGCACGGGCGAAGAGGCGGGCCCCGGUGGC	chr21:34143592-34143958(-)$1	366	77	117	18.1249
GCCGGGUGGCGGGGCGGCUGAGGAGGCGGCGCCGCCCUGG	chr2:97482321-97482585(+)$1	264	58	98	11.8436
UGCUGGCAUCUAUGCUGAAAUAUAUUCAGGAUCUAAGCAC	chr17:37358579-37358790(+)$1	211	149	189	12.6165
UGAUGAUGGGGAAACAAUUGCUGUUCUUGGAGCUGGUCGA	chr20:40141384-40141687(-)$1	303	121	161	12.8951
AAUGGCUAAUGAGGCCAACAGCGAGGAGGCCAUCACCCCC	chr12:124885029-124885320(-)$1	291	215	255	13.4430
ggggcccgggcccaacggcggcggcggcggcccggccccc	chr19:1020848-1021214(-)$1	366	248	288	11.5801
GAGUCGGGCCUGGGCGCCCGCGCCCAGCGUCCCAGGCCUG	chr20:42086679-42086903(+)$1	224	103	143	14.1018

#DB
((.(..(((((.(((((((.....))))...))).)))))	chr16:46918504-46918752(+)$1	1	188	228	13.8179
(((.(((...(((((((((.....))))))))))))...)	chr2:120128212-120128479(+)$1	1	36	76	15.4006
..((((((((...(((.((.....))))).))))))))..	chr16:24741065-24741276(+)$1	1	145	185	12.6244
(..(((..(((((((((.(.....).))))))))))))..	chr22:36685150-36685424(-)$1	1	77	117	15.9166
((.((((..((((((.(((.....)))))))))..)))))	chr20:40143362-40143652(-)$1	1	8	48	12.0106
((((.((((((...(((.........)))..)))))).))	chr1:16482276-16482659(-)$1	1	130	170	12.5754
(((...(((((((...((......))....))).))))..	chr17:37054565-37054878(+)$1	1	79	119	14.3857
.((((..((((.....(((......)))...)).))....	chr12:76449712-76450044(-)$1	1	12	52	14.5092
..(...((((((..((.(.(......).).))..)))).)	chr17:79827603-79827920(-)$1	1	220	260	11.8775
(((((.(((.((..(((((.....)))))..))))).)))	chr20:25371096-25371506(-)$1	1	45	85	13.5237
(((((((..((((((.(((.....)))....))))))..)	chr22:36681610-36681839(-)$1	1	160	200	13.4218
(.(((..((((...(((.........)))..))))))).)	chr20:278121-278416(+)$1	1	233	273	13.7802
.(..(((((...(((.(((...))).)))...)))))..)	chr12:133067139-133067463(+)$1	1	250	290	13.5300
..(((.(((((((((((.((....))....)))))))...	chr1:146756899-146757194(+)$1	1	114	154	12.6361
(((.((.((((((.((((((......)))..)))))))))	chr9:6645323-6645591(-)$1	1	137	177	12.4612
))(((.(((.(((((((((.....))))))))).))))))	chr6:52132622-52132867(-)$1	1	30	70	14.7924
(((..(((...(((((((.........))))))).)))..	chr1:205687317-205687708(-)$1	1	6	46	12.1383
(.((((..(((((.(((.........)))..))))).)))	chr3:184040252-184040524(+)$1	1	7	47	11.3789
...(((..((.....(((......)))....))..)))))	chr7:134632375-134632621(+)$1	1	118	158	12.5467
....(((.(((..((.(.(.....).).))..))))))..	chr15:72501951-72502233(-)$1	1	195	235	15.7272
(((.(.(((.((...((((.....)))).))))).).)))	chr19:55628673-55629013(-)$1	1	89	129	14.0200
((....(((((((.(((((......))))))))))))...	chr9:131356406-131356693(+)$1	1	103	143	13.4601
(((((((.(((...((.((....)).))...)))..))))	chr12:121416352-121416650(+)$1	1	156	196	12.7745
((((.(((.(((((((((((....))))))))))).))).	chr9:117053029-117053295(+)$1	1	35	75	12.8249
(((....((((((((..(((......)))..).)).))))	chr2:232577051-232577316(+)$1	1	177	217	12.2329
.((.((((.((.....(((.....)))...)).))))..)	chr14:23790895-23791131(+)$1	1	114	154	13.8847
(((.(((((.((....(((.....)))....))))).)).	chr11:118919429-118919699(-)$1	1	49	89	15.4677
((((.(((((((..((..(((.....)))..)).))))))	chr16:448868-449139(+)$1	1	28	68	13.0338
(((((((((((((.(.(((((...)))))).)))))))))	chr15:90328470-90328821(-)$1	1	71	111	13.0841
(((((...(((((((..((((....))))..)))))))..	chr20:39766141-39766435(+)$1	1	88	128	10.8672
(...(((.(((...(.(((....))))...))).))))))	chr2:75061566-75061824(+)$1	1	165	205	14.7850
((..(((((((((....((......))...))))))))).	chr14:102496064-102496345(+)$1	1	80	120	15.4835
.(((..((.((.(((((.(.....).))))).))))))).	chr6:114180844-114181108(+)$1	1	70	110	12.2907
((((....((((...(((((....)))))..))))...))	chr17:27420233-27420531(-)$1	1	241	281	11.7760
.(((.((((((((((.((.....))))))..))).))).)	chr19:531688-532046(+)$1	1	128	168	12.7611
((((((((((((...((.(.....).))...)))))))))	chr16:22385523-22385861(-)$1	1	171	211	17.5160
.(((((...(((..(((.(((...)))...)))..)))..	chr9:128000817-128001117(-)$1	1	89	129	14.5582
(((.((....(((.(((.((.....))...))).))))).	chr4:76580159-76580533(-)$1	1	200	240	13.5286
(((...((((..(..(.(((....))).)..)..))))..	chr12:19592828-19593136(+)$1	1	251	291	11.6472
(((((.(.(((((.(.(((...))).).))).)).).)))	chr10:88854294-88854545(-)$1	1	199	239	11.6406
.((((..((((((.(.(((...))).)))))))))))..)	chr20:3175857-3176095(-)$1	1	73	113	11.2806
.((.(.((((((((((((......)))....)))))..))	chr22:36684266-36684560(-)$1	1	81	121	12.0059
(((((.(((((((.(..((.....))...).)))))))))	chr9:117063626-117063842(+)$1	1	133	173	14.7724
((..(((((((....((.((...))))...)))).)))..	chr20:43029842-43030139(+)$1	1	156	196	12.8958
((.(((.(((((.(((.((.....))))).)))..)).))	chr2:11484087-11484356(-)$1	1	203	243	13.2303
(((((.(((((....((((......))))....))))..)	chr6:158402917-158403199(+)$1	1	58	98	13.2835
(((((((.((.....((((.....))))))))))))))))	chr10:105614882-105615357(-)$1	1	16	56	12.2909
((((.((((...((((.........))))..))))...))	chr1:93307233-93307511(+)$1	1	226	266	10.4504
((.(((((.(.((.(((((.....)))))...)).).)))	chr5:154173255-154173513(+)$1	1	165	205	13.5084
((((.((.(.((((..(((.....))))))).))).))))	chr20:3175781-3176029(-)$1	1	126	166	11.8914
((((..(((....(((..((...))..)))....)))...	chr22:19166061-19166345(-)$1	1	138	178	12.7890
((((((((((((..(.(.(.....).).)..)))))))))	chr21:34143592-34143958(-)$1	1	77	117	18.1249
(((.((.(((((.((.(((.....))).)).))))))).)	chr2:97482321-97482585(+)$1	1	58	98	11.8436
((((((.(((....(((((.....)))))))))).)))))	chr17:37358579-37358790(+)$1	1	149	189	12.6165
((.((((.((....(((.........)))...)).)))).	chr20:40141384-40141687(-)$1	1	121	161	12.8951
..(((....(((((((..(.....)..)))).)))....)	chr12:124885029-124885320(-)$1	1	215	255	13.4430
((((.(((((((...(.((....)).).))))))).))))	chr19:1020848-1021214(-)$1	1	248	288	11.5801
.(.((((((((((((((.........))).))))))))))	chr20:42086679-42086903(+)$1	1	103	143	14.1018

#PSSM
d : 0.15	! : 0.13	e : 0.13	c : 0.12	g : 0.10	a : 0.06	[ : 0.06	f : 0.06	# : 0.03	= : 0.03	h : 0.01	' : 0.01	i : 0.01	b : 0.01	
c : 0.20	d : 0.17	e : 0.15	g : 0.08	! : 0.06	f : 0.06	# : 0.03	[ : 0.03	a : 0.03	b : 0.03	= : 0.03	h : 0.01	' : 0.01	i : 0.01	" : 0.01	
c : 0.24	d : 0.15	e : 0.13	[ : 0.10	! : 0.06	b : 0.05	g : 0.05	# : 0.03	= : 0.03	f : 0.03	h : 0.01	a : 0.01	' : 0.01	i : 0.01	" : 0.01	
c : 0.20	[ : 0.13	d : 0.13	e : 0.13	" : 0.06	! : 0.06	= : 0.06	# : 0.05	b : 0.03	a : 0.01	h : 0.01	i : 0.01	f : 0.01	g : 0.01	
c : 0.18	d : 0.12	[ : 0.12	e : 0.10	b : 0.10	! : 0.06	= : 0.06	" : 0.05	# : 0.05	a : 0.03	i : 0.03	h : 0.01	f : 0.01	g : 0.01	
c : 0.18	[ : 0.13	b : 0.12	! : 0.10	d : 0.08	" : 0.06	# : 0.06	= : 0.06	g : 0.05	e : 0.03	i : 0.03	h : 0.01	f : 0.01	
c : 0.22	d : 0.13	! : 0.10	g : 0.08	b : 0.06	[ : 0.06	# : 0.06	= : 0.06	e : 0.03	i : 0.03	" : 0.03	a : 0.03	h : 0.01	f : 0.01	
c : 0.17	d : 0.15	[ : 0.12	! : 0.08	e : 0.06	b : 0.06	g : 0.06	= : 0.06	" : 0.05	f : 0.05	# : 0.05	h : 0.01	i : 0.01	
d : 0.17	c : 0.17	b : 0.10	e : 0.08	g : 0.08	[ : 0.06	= : 0.06	" : 0.05	f : 0.05	i : 0.03	! : 0.03	# : 0.03	h : 0.01	a : 0.01	
d : 0.15	c : 0.13	b : 0.12	f : 0.08	[ : 0.08	g : 0.08	= : 0.08	e : 0.06	" : 0.06	i : 0.03	# : 0.03	h : 0.01	a : 0.01	
c : 0.17	b : 0.10	d : 0.10	g : 0.10	e : 0.08	f : 0.08	= : 0.08	i : 0.06	" : 0.06	# : 0.05	$ : 0.03	! : 0.01	[ : 0.01	
" : 0.12	g : 0.12	c : 0.10	= : 0.08	# : 0.08	i : 0.06	f : 0.06	$ : 0.06	d : 0.06	b : 0.06	e : 0.06	[ : 0.03	! : 0.03	
" : 0.15	! : 0.10	# : 0.10	c : 0.08	g : 0.08	i : 0.06	f : 0.06	$ : 0.06	d : 0.06	e : 0.05	= : 0.05	b : 0.03	[ : 0.03	a : 0.01	
" : 0.15	[ : 0.15	! : 0.10	# : 0.10	c : 0.08	$ : 0.06	d : 0.06	i : 0.05	g : 0.05	b : 0.05	f : 0.03	= : 0.03	e : 0.03	
c : 0.22	a : 0.12	e : 0.10	" : 0.08	b : 0.08	$ : 0.06	# : 0.06	i : 0.05	g : 0.05	d : 0.05	f : 0.03	! : 0.03	= : 0.01	
c : 0.22	[ : 0.18	d : 0.10	e : 0.10	b : 0.08	! : 0.06	i : 0.05	$ : 0.03	g : 0.03	# : 0.03	a : 0.03	" : 0.01	= : 0.01	
c : 0.36	e : 0.12	[ : 0.10	! : 0.10	d : 0.06	b : 0.06	i : 0.05	g : 0.03	a : 0.03	= : 0.01	# : 0.01	r : 0.01	
c : 0.27	[ : 0.15	b : 0.13	r : 0.10	e : 0.10	d : 0.08	! : 0.05	i : 0.03	a : 0.01	g : 0.01	= : 0.01	
c : 0.27	b : 0.17	r : 0.12	a : 0.10	e : 0.10	d : 0.08	o : 0.05	i : 0.03	[ : 0.01	= : 0.01	n : 0.01	
n : 0.41	r : 0.12	o : 0.12	c : 0.08	b : 0.06	l : 0.05	m : 0.05	e : 0.03	a : 0.01	= : 0.01	d : 0.01	
n : 0.43	o : 0.17	r : 0.12	m : 0.12	l : 0.08	c : 0.03	e : 0.01	d : 0.01	
n : 0.44	o : 0.17	m : 0.13	r : 0.12	l : 0.12	
n : 0.44	o : 0.17	m : 0.13	r : 0.12	l : 0.06	c : 0.05	
n : 0.43	o : 0.17	r : 0.12	m : 0.08	b : 0.08	c : 0.06	l : 0.03	
c : 0.24	b : 0.17	r : 0.12	o : 0.12	a : 0.10	e : 0.08	d : 0.05	i : 0.03	n : 0.03	= : 0.01	m : 0.01	
c : 0.20	] : 0.17	b : 0.13	d : 0.12	r : 0.10	e : 0.10	o : 0.05	i : 0.03	2 : 0.03	= : 0.01	n : 0.01	
c : 0.37	d : 0.12	a : 0.12	e : 0.12	b : 0.08	i : 0.05	4 : 0.03	2 : 0.03	r : 0.01	= : 0.01	3 : 0.01	
c : 0.22	d : 0.15	] : 0.12	e : 0.12	3 : 0.12	4 : 0.10	i : 0.05	f : 0.03	b : 0.03	g : 0.01	= : 0.01	
c : 0.22	3 : 0.18	e : 0.12	4 : 0.10	d : 0.10	i : 0.05	a : 0.05	b : 0.05	f : 0.03	g : 0.03	] : 0.01	= : 0.01	
3 : 0.22	2 : 0.22	4 : 0.12	] : 0.06	b : 0.06	i : 0.05	c : 0.05	f : 0.03	g : 0.03	e : 0.03	a : 0.03	d : 0.03	= : 0.01	
2 : 0.24	3 : 0.12	c : 0.12	4 : 0.10	g : 0.08	i : 0.06	b : 0.05	] : 0.05	d : 0.05	f : 0.03	= : 0.03	h : 0.01	e : 0.01	
c : 0.18	b : 0.12	g : 0.12	= : 0.08	i : 0.06	f : 0.06	d : 0.06	] : 0.06	3 : 0.05	e : 0.05	a : 0.03	4 : 0.03	h : 0.01	2 : 0.01	
c : 0.20	b : 0.17	g : 0.12	= : 0.08	i : 0.06	f : 0.06	d : 0.06	e : 0.06	2 : 0.03	] : 0.03	4 : 0.03	h : 0.01	a : 0.01	
c : 0.17	d : 0.12	g : 0.12	b : 0.12	2 : 0.10	] : 0.10	= : 0.08	e : 0.06	i : 0.03	f : 0.03	h : 0.01	4 : 0.01	
] : 0.15	c : 0.15	d : 0.15	g : 0.12	2 : 0.08	= : 0.08	b : 0.06	e : 0.06	f : 0.05	i : 0.03	h : 0.01	
c : 0.25	d : 0.13	e : 0.10	g : 0.10	] : 0.06	= : 0.06	f : 0.05	b : 0.05	a : 0.05	3 : 0.03	h : 0.01	2 : 0.01	i : 0.01	4 : 0.01	
c : 0.24	d : 0.15	] : 0.10	g : 0.10	e : 0.08	= : 0.06	3 : 0.05	f : 0.05	4 : 0.03	i : 0.03	b : 0.03	h : 0.01	2 : 0.01	
c : 0.22	d : 0.13	2 : 0.10	e : 0.08	3 : 0.08	g : 0.06	= : 0.06	4 : 0.05	b : 0.05	] : 0.03	f : 0.03	i : 0.03	h : 0.01	
2 : 0.17	c : 0.15	e : 0.12	d : 0.10	3 : 0.08	4 : 0.06	] : 0.06	= : 0.06	f : 0.03	i : 0.03	b : 0.03	g : 0.03	5 : 0.01	
c : 0.18	2 : 0.13	e : 0.12	3 : 0.08	d : 0.06	= : 0.06	4 : 0.05	g : 0.05	b : 0.05	a : 0.05	f : 0.05	] : 0.03	i : 0.01	5 : 0.01	

#score	769.6971981327517
#seq	58
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_UTR_m2_run1.txt

#BEAR
[ccc[dddd[==========nnnnn==========22dd	chr3:33038278-33038530(-)$1	252	49	88	15.0068
cc:::==============oooooo==============	chr11:118279630-118279944(+)$1	314	11	50	15.6563
c!!ccc!!a[iiiiiiiiillliiiiiiiii]a22ccc4	chr12:112460447-112460692(+)$1	245	68	107	14.0033
dd"""ccc"""ffffff[aooooooa]ffffff333ccc	chr1:151239711-151239972(+)$1	261	151	190	15.3197
[ccc[cccggggggg!!bboooooobb22ggggggg]cc	chr11:10819000-10819308(-)$1	308	128	167	17.1998
f!!dddd[a!!eeeee[bbnnnnnbb]eeeee22a]ddd	chr16:31202250-31202500(+)$1	250	92	131	13.0214
dd[iiiiiiiii####cccooooooccc333iiiiiiii	chr14:70238191-70238473(+)$1	282	154	193	16.9101
cc!!bb!!ccc!!dddd[aooooooa]ddddccc333bb	chr19:49464414-49464656(+)$1	242	16	55	14.1663
cc[dddd[ggggggg!!bbnnnnnbbggggggg]ddddc	chr19:54606325-54606597(+)$1	272	59	98	13.7642
eedddddddd[eeeee[bboooooobb]eeeee]dddd4	chr19:50886000-50886280(+)$1	280	199	238	14.2678
iiiiiii[a[gggggggbboooooobb22gggggggaii	chr17:36908969-36909176(+)$1	207	33	72	17.6732
eeee[ccc[bbdddd!!bboooooobb]dddd22bb]cc	chr6:31698496-31698787(-)$1	291	49	88	13.8479
::eeeee"""ffffff[bboooooobbffffff333eee	chr11:18429178-18429428(+)$1	250	6	45	13.7070
ccc[ccc####gggggggbbnnnnnbb22ggggggg333	chr19:12907718-12907962(-)$1	244	126	165	15.9008
ccc[ccc$$$$$cccrrrrrrrrrccc333cccccc22e	chr1:183522816-183523092(+)$1	276	231	270	11.2395
eeee:ggggggg"""cccbbnnnnnbb]ccc4444gggg	chr18:9954455-9954761(+)$1	306	185	224	12.7987
i:ccc[=============nnnnn=============22	chr19:54704627-54704857(+)$1	230	151	190	15.4137
========="""eeeee!!aooooooa22eeeee88888	chr1:150192895-150193150(-)$1	255	158	197	13.8577
c===========$$$$$bbnnnnnbb4444=========	chr17:40465253-40465501(-)$1	248	189	228	15.1750
!ggggggg[ffffff!!cccmmmmccc22ffffff]ggg	chr16:2303108-2303358(-)$1	250	156	195	11.9656
========$$$$$ddddoooooodddd22==========	chr11:315058-315352(+)$1	294	183	222	14.1574
!!ggggggg[ccc!!a!!ccclllccc22a22cccgggg	chr19:3053636-3053896(-)$1	260	146	185	13.3021
==::ccc[ggggggg[cccoooooocccggggggg22cc	chr3:9519594-9519843(+)$1	249	140	179	14.3519
eeeee!!ccc[dddd[cccooooooccc]dddd]ccc44	chr16:88876377-88876625(-)$1	248	101	140	14.5060
"""bba[a####eeeeebboooooobb333eeeee4444	chr14:23794557-23794820(+)$1	263	163	202	16.8088
$$ccc"""gggggggddddmmmmdddd333ggggggg33	chr17:26900067-26900345(-)$1	278	109	148	11.9035
ggggghhhhhhhh[a[cccooooooccc]a]hhhhhhhh	chr12:118583220-118583469(+)$1	249	157	196	12.5448
!dddddddd[ffffff[bboooooobb]ffffffdddd]	chr16:69151858-69152145(-)$1	287	133	172	14.0377
::================oooooo===============	chr11:62360886-62361132(-)$1	246	164	203	16.3610
[ffffff!!ffffff!!bboooooobb22ffffff4444	chr20:5095621-5095872(-)$1	251	195	234	15.3903
::a[ccc"""==========lll==========4444cc	chr1:28564456-28564705(+)$1	249	31	70	14.6991
ccc[ccc####gggggggbbnnnnnbb22ggggggg333	chr19:12907762-12908022(-)$1	260	186	225	15.9008
iiiiiiii$$$$$ccc[cccmmmmccc]ccc4444iiii	chr16:1374636-1374926(+)$1	290	7	46	13.0842
c[bb!!ccc[bb[a[cccccclllccc]ccc]a]bb333	chr17:47492095-47492324(-)$1	229	49	88	12.3590
iiiiiii[eeeee[eeeeeooooooeeeee]eeeee]ii	chr19:1258708-1258989(+)$1	281	62	101	13.8676
===================oooooo==============	chr19:47774850-47775137(+)$1	287	114	153	18.9024
!!iiiiiiiii"""a[cccooooooccc]a666666iii	chr19:3052979-3053219(-)$1	240	89	128	14.5050
:eeeee==========cccnnnnnccc]==========]	chr19:49464890-49465144(+)$1	254	124	163	14.8759
eeebb[dddd==========nnnnn==========22dd	chr17:41154788-41155044(+)$1	256	22	61	13.7059
==================[bbmmmmbb]===========	chr2:232319409-232319663(-)$1	254	91	130	14.6792
$$a[ffffffccc[bb[bboooooobbbbccc22fffff	chr7:75956830-75957085(-)$1	255	42	81	12.5691
bb!!bb####ccc[dddd[aooooooa]dddd333cccb	chr11:62482471-62482725(-)$1	254	28	67	13.8638
a[eeeeeccc[eeeee!!bbnnnnnbb22eeeee22ccc	chr1:33476157-33476433(-)$1	276	50	89	12.7875
eee!!eeeee!!cccacccooooooccc]a]ccceeeee	chr17:4848940-4849218(-)$1	278	149	188	14.0934
ccbbccc!!ccc[ccc[ammmma]ccc22ccc]ccc333	chr19:50363432-50363693(+)$1	261	147	186	12.1736
::ggggggg!!ffffff[aooooooaffffffggggggg	chr8:101715246-101715455(-)$1	209	150	189	13.4065
:cccdddd!!eeeee"""bbnnnnnbb333eeeee22dd	chr10:79800271-79800481(+)$1	210	160	199	12.6260
gg[ccc[eeeee!!eeeeeooooooeeeee4444eeeee	chr19:50191502-50191747(+)$1	245	66	105	13.3310
gggggga!!dddd!!ccc[aooooooa]ccc333dddd4	chr2:73479812-73480153(+)$1	341	151	190	14.8552
::ggggggg####ffffffooooooffffff4444gggg	chr8:101733999-101734203(-)$1	204	12	51	13.4454
f!!dddd[a!!eeeee[bbnnnnnbb]eeeee22a]ddd	chr16:31202300-31202522(+)$1	222	42	81	13.0214
""ccc!!dddd!!bb!!bboooooobb]bb]ddddccc]	chr11:5290596-5290848(-)$1	252	105	144	14.4597
adddd[=============oooooo=============2	chr11:57510233-57510464(+)$1	231	12	51	17.8631
ccc$$$$$ccc[gggggggooooooggggggg22ccc22	chr3:53259587-53259872(-)$1	285	31	70	14.2776
gg[dddd[a####ddddoooooodddd4444a]dddd33	chr2:27294093-27294312(-)$1	219	40	79	12.8448
iiiiiiiii[ccc[a[cccccclllccc4444ccc]a]c	chr1:156280252-156280538(-)$1	286	174	213	13.1267
cc[dddd"""dddd[ddddoooooodddddddd]dddd]	chr15:44063537-44063788(+)$1	251	149	188	13.0500
cc[eeeee"""eeeee[bbnnnnnbb]eeeeeeeeee]c	chr20:35869752-35870008(+)$1	256	137	176	12.6967

#otherMatches

#Seq PSSM
CCCUGUCAUGCCACAUUUCACUGAUUGGAAUGUGGAAAU	chr3:33038278-33038530(-)$1	252	49	88	15.0068
UCAAauauauauauauauauauaauuauauauauauaua	chr11:118279630-118279944(+)$1	314	11	50	15.6563
UGGCUGUGAGUCCCUUGUGGAAUAUAAGGGGGUAGUGGG	chr12:112460447-112460692(+)$1	245	68	107	14.0033
GGGAAGCACGGAAUAUAGGGUUAGAUGUGUGUUAUCUGU	chr1:151239711-151239972(+)$1	261	151	190	15.3197
CUACCAUCAAAUAUUUUAGGAGUAUCUUUAAUGUUUAGA	chr11:10819000-10819308(-)$1	308	128	167	17.1998
CGGGGCCGCGGCGGGGACCGUGGAGGCUUCCGAGGGGGC	chr16:31202250-31202500(+)$1	250	92	131	13.0214
GGGUUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUA	chr14:70238191-70238473(+)$1	282	154	193	16.9101
UUCUGCCCUCCCUGGAGCCUCCACUGCCUCUGGAAUUGC	chr19:49464414-49464656(+)$1	242	16	55	14.1663
CUACUUGCAGGGGUGACGCUUCUUGCCACCCCUUCAGGA	chr19:54606325-54606597(+)$1	272	59	98	13.7642
UCUUCCUCUGCUUUUAUUUAAUAAAAACUAAAAACAGAA	chr19:50886000-50886280(+)$1	280	199	238	14.2678
AGCGGUUGCGCAGUGAAGGCUAGACCCGGUUUACUGGAA	chr17:36908969-36909176(+)$1	207	33	72	17.6732
UUCCGGGGAGUGCAUCGGUACUUGAGCAAUGCCUACGCC	chr6:31698496-31698787(-)$1	291	49	88	13.8479
CAACAUUUUUUCCCAGUGAGUCACAUCCUGGGAUCCAGU	chr11:18429178-18429428(+)$1	250	6	45	13.7070
CUGUGCCCCCACCUGGGUGCCCUAUGCUGACCCAGGAAA	chr19:12907718-12907962(-)$1	244	126	165	15.9008
CAGUAAUACCCAGCUCCUAUCUAAAGCCCCAUUCUGCAU	chr1:183522816-183523092(+)$1	276	231	270	11.2395
UCCUUGGGGAAAUGGUGCCUCUUACAGUGUAAAUUUUUC	chr18:9954455-9954761(+)$1	306	185	224	12.7987
UUCUCUAGGGUUUGGGUUGGAUGGUGGCCCGGGCCUUCC	chr19:54704627-54704857(+)$1	230	151	190	15.4137
AUCAUUCUAAGACCAGAUUCUCUAAUGUUUCUGGGUGUG	chr1:150192895-150193150(-)$1	255	158	197	13.8577
GGAGGCUUCCUUUUCCCCUGCAUAAGUUCUGAGGGGGCC	chr17:40465253-40465501(-)$1	248	189	228	15.1750
GCAUUUUAGAUGACAUUGUGUUUGUACUUUGUUGUGUAG	chr16:2303108-2303358(-)$1	250	156	195	11.9656
GUGUCAUUCAAUAAAGUGCACGUGCUUGUGAUGAUGCUG	chr11:315058-315352(+)$1	294	183	222	14.1574
AUGUUUAGCACAAGACACAGCGGAGCUCGGGAUUGGCUA	chr19:3053636-3053896(-)$1	260	146	185	13.3021
CUCAAGUGGAGUGUUUACACCUUGCUGUAACAUUUGAAC	chr3:9519594-9519843(+)$1	249	140	179	14.3519
GCCAGGACAGAGGGUGGUCGUCGUGGAUGAUCUGCUGGC	chr16:88876377-88876625(-)$1	248	101	140	14.5060
UUAUUCACUCUGGGGAUUCGCCAUGGACACGUCUCAACU	chr14:23794557-23794820(+)$1	263	163	202	16.8088
CUUCUUGCCUGCCCUGUCUCCUGGGAUCAGAGGGUAGUA	chr17:26900067-26900345(-)$1	278	109	148	11.9035
AACCUGAAUGAAGGAACUGAGUCCCCGGAUGUUUUGUUC	chr12:118583220-118583469(+)$1	249	157	196	12.5448
AAUCACUGUGCUUUGUUCGGCCUGGUGUGCAAGGAUGGU	chr16:69151858-69152145(-)$1	287	133	172	14.0377
UUGGGGGAGGGGGGCGUGCACUGCCAUGUCuuuuuuuuu	chr11:62360886-62361132(-)$1	246	164	203	16.3610
ACAAAAGGGUCUUGACUCUAAAUGCAGUUUUAAGAAUUG	chr20:5095621-5095872(-)$1	251	195	234	15.3903
AAGUGCACACCGUGUGCCAUAGAAUGGCACAUGUCAUUG	chr1:28564456-28564705(+)$1	249	31	70	14.6991
CUGUGCCCCCACCUGGGUGCCCUAUGCUGACCCAGGAAA	chr19:12907762-12908022(-)$1	260	186	225	15.9008
CCUGGUCUGCCCAGCUGGCUCCGGGGCGAGCGUGAGGGC	chr16:1374636-1374926(+)$1	290	7	46	13.0842
UGGAAAGCGGGCGGGGCAGAGGAGCUCAUGCGCAGUAUG	chr17:47492095-47492324(-)$1	229	49	88	12.3590
UUGUUUUGUUUUCAUUUUUCCaaaaaaaaaagaaaaaaa	chr19:1258708-1258989(+)$1	281	62	101	13.8676
ugugugugugugugugugugugugugcgcgcgcgcgcgc	chr19:47774850-47775137(+)$1	287	114	153	18.9024
auuuuuuuCUUUUUCCAGUAUACUAGCUUGUCUUUUAAG	chr19:3052979-3053219(-)$1	240	89	128	14.5050
AGAGUGGUCUUGAGGGGGUAAUAAACCUCCUUCGGGACA	chr19:49464890-49465144(+)$1	254	124	163	14.8759
UUUGGUAGUGAAUGGUGGAGUAUGGUUUCACUAUUUCCA	chr17:41154788-41155044(+)$1	256	22	61	13.7059
guuuuuuuuuuuUUUGCGUUCGUGGGGUUGUAAAAGAAA	chr2:232319409-232319663(-)$1	254	91	130	14.6792
GGCGCCUAAAGUCAUUGCCAUGGGAGGAAGACGAUUUGG	chr7:75956830-75957085(-)$1	255	42	81	12.5691
CCAAGGAAAACAGGGGCUGUCGGGGUGGGGCUGAGCUGC	chr11:62482471-62482725(-)$1	254	28	67	13.8638
CGUGAUCCCUGCUCUUAGGUGCUGGGCAGAGGGGAAGGG	chr1:33476157-33476433(-)$1	276	50	89	12.7875
GGGCUGGGGGCCAGGGCUGGAUGGACAGACACCUCCCCC	chr17:4848940-4849218(-)$1	278	149	188	14.0934
CCCCGCAGAGACUGGUGAGUGGUGACCCUGUCAUGUACA	chr19:50363432-50363693(+)$1	261	147	186	12.1736
AGUACAAAAAUUUAAAGCAUUCCUUUCUUUAAUUUUGUA	chr8:101715246-101715455(-)$1	209	150	189	13.4065
AACAUUAAUAAACUAAAAACUUCAUGUGUCUGGUUGUUU	chr10:79800271-79800481(+)$1	210	160	199	12.6260
CUUCCUCUCCCUCCCUCCCGCAGAAGGGGGUUUUAGGGG	chr19:50191502-50191747(+)$1	245	66	105	13.3310
GCCGUGGUCGUGGCCGCCCCCACUGAGAGGCACCCCACC	chr2:73479812-73480153(+)$1	341	151	190	14.8552
ACAAAAAAUCCGCGUCUCCCCCGCCGGAGACUUUUAUUU	chr8:101733999-101734203(-)$1	204	12	51	13.4454
CGGGGCCGCGGCGGGGACCGUGGAGGCUUCCGAGGGGGC	chr16:31202300-31202522(+)$1	222	42	81	13.0214
UUUGCUAAGCUGAGUGAGCUGCACUGUGACAAGCUGCAU	chr11:5290596-5290848(-)$1	252	105	144	14.4597
GAGUUCAAGGGUUGGGGAACAUGUCUUCCUCAGUCCUUA	chr11:57510233-57510464(+)$1	231	12	51	17.8631
GCUGAAGAUGUUUGGUAUCGACAGGGAUGCCAUUGCACA	chr3:53259587-53259872(-)$1	285	31	70	14.2776
UGCUUGUCGUUCUCUAUCACUACGUGGCCGUCAACAAUC	chr2:27294093-27294312(-)$1	219	40	79	12.8448
UAAGACAGCAGUGGAGGUAAGGCACCCUAAGAUAUGUAC	chr1:156280252-156280538(-)$1	286	174	213	13.1267
CUAAUUUUUUUUGUACAUUUGGAACAGUGACAAUAAAUG	chr15:44063537-44063788(+)$1	251	149	188	13.0500
ACCUGGUGAGCUCAGAUAGUCUCUUUCUCUGACACUGUG	chr20:35869752-35870008(+)$1	256	137	176	12.6967

#DB
.(((.((((.((((((((((.....))))))))))..))	chr3:33038278-33038530(-)$1	1	49	88	15.0068
))...((((((((((((((......))))))))))))))	chr11:118279630-118279944(+)$1	1	11	50	15.6563
(..(((..(.(((((((((...))))))))).)..))).	chr12:112460447-112460692(+)$1	1	68	107	14.0033
((...(((...((((((.(......).))))))...)))	chr1:151239711-151239972(+)$1	1	151	190	15.3197
.(((.((((((((((..((......))..))))))).))	chr11:10819000-10819308(-)$1	1	128	167	17.1998
(..((((.(..(((((.((.....)).)))))..).)))	chr16:31202250-31202500(+)$1	1	92	131	13.0214
((.(((((((((....(((......)))...))))))))	chr14:70238191-70238473(+)$1	1	154	193	16.9101
((..((..(((..((((.(......).)))))))...))	chr19:49464414-49464656(+)$1	1	16	55	14.1663
((.((((.(((((((..((.....))))))))).)))))	chr19:54606325-54606597(+)$1	1	59	98	13.7642
))((((((((.(((((.((......)).))))).)))).	chr19:50886000-50886280(+)$1	1	199	238	14.2678
(((((((.(.(((((((((......))..))))))))))	chr17:36908969-36909176(+)$1	1	33	72	17.6732
((((.(((.((((((..((......)).))))..)).))	chr6:31698496-31698787(-)$1	1	49	88	13.8479
..(((((...((((((.((......))))))))...)))	chr11:18429178-18429428(+)$1	1	6	45	13.7070
(((.(((....(((((((((.....))..)))))))...	chr19:12907718-12907962(-)$1	1	126	165	15.9008
(((.(((.....(((.........)))...))))))..)	chr1:183522816-183523092(+)$1	1	231	270	11.2395
)))).(((((((...(((((.....)).)))....))))	chr18:9954455-9954761(+)$1	1	185	224	12.7987
).(((.(((((((((((((.....)))))))))))))..	chr19:54704627-54704857(+)$1	1	151	190	15.4137
(((((((((...(((((..(......)..))))).....	chr1:150192895-150193150(-)$1	1	158	197	13.8577
((((((((((((.....((.....))....)))))))))	chr17:40465253-40465501(-)$1	1	189	228	15.1750
.(((((((.((((((..(((....)))..)))))).)))	chr16:2303108-2303358(-)$1	1	156	195	11.9656
((((((((.....((((......))))..))))))))))	chr11:315058-315352(+)$1	1	183	222	14.1574
..(((((((.(((..(..(((...)))..)..)))))))	chr19:3053636-3053896(-)$1	1	146	185	13.3021
))..(((.(((((((.(((......))))))))))..))	chr3:9519594-9519843(+)$1	1	140	179	14.3519
(((((..(((.((((.(((......))).)))).)))..	chr16:88876377-88876625(-)$1	1	101	140	14.5060
...(((.(....(((((((......))...)))))....	chr14:23794557-23794820(+)$1	1	163	202	16.8088
..(((...(((((((((((....))))...)))))))..	chr17:26900067-26900345(-)$1	1	109	148	11.9035
(((((((((((((.(.(((......))).).))))))))	chr12:118583220-118583469(+)$1	1	157	196	12.5448
.((((((((.((((((.((......)).)))))))))).	chr16:69151858-69152145(-)$1	1	133	172	14.0377
..((((((((((((((((......)))))))))))))))	chr11:62360886-62361132(-)$1	1	164	203	16.3610
.((((((..((((((..((......))..))))))....	chr20:5095621-5095872(-)$1	1	195	234	15.3903
..(.(((...((((((((((...))))))))))....))	chr1:28564456-28564705(+)$1	1	31	70	14.6991
(((.(((....(((((((((.....))..)))))))...	chr19:12907762-12908022(-)$1	1	186	225	15.9008
((((((((.....(((.(((....))).)))....))))	chr16:1374636-1374926(+)$1	1	7	46	13.0842
(.((..(((.((.(.((((((...))).))).).))...	chr17:47492095-47492324(-)$1	1	49	88	12.3590
(((((((.(((((.(((((......))))).))))).))	chr19:1258708-1258989(+)$1	1	62	101	13.8676
(((((((((((((((((((......))))))))))))))	chr19:47774850-47775137(+)$1	1	114	153	18.9024
..(((((((((...(.(((......))).)......)))	chr19:3052979-3053219(-)$1	1	89	128	14.5050
.((((((((((((((((((.....))).)))))))))).	chr19:49464890-49465144(+)$1	1	124	163	14.8759
)))((.((((((((((((((.....))))))))))..))	chr17:41154788-41155044(+)$1	1	22	61	13.7059
((((((((((((((((((.((....)).)))))))))))	chr2:232319409-232319663(-)$1	1	91	130	14.6792
..(.(((((((((.((.((......)))))))..)))))	chr7:75956830-75957085(-)$1	1	42	81	12.5691
((..((....(((.((((.(......).))))...))))	chr11:62482471-62482725(-)$1	1	28	67	13.8638
(.((((((((.(((((..((.....))..)))))..)))	chr1:33476157-33476433(-)$1	1	50	89	12.7875
(((..(((((..(((((((......))).).))))))))	chr17:4848940-4849218(-)$1	1	149	188	14.0934
(((((((..(((.(((.(....).)))..))).)))...	chr19:50363432-50363693(+)$1	1	147	186	12.1736
..(((((((..((((((.(......))))))))))))))	chr8:101715246-101715455(-)$1	1	150	189	13.4065
.(((((((..(((((...((.....))...)))))..))	chr10:79800271-79800481(+)$1	1	160	199	12.6260
((.(((.(((((..(((((......)))))....)))))	chr19:50191502-50191747(+)$1	1	66	105	13.3310
(((((((..((((..(((.(......).)))...)))).	chr2:73479812-73480153(+)$1	1	151	190	14.8552
..(((((((....((((((......))))))....))))	chr8:101733999-101734203(-)$1	1	12	51	13.4454
(..((((.(..(((((.((.....)).)))))..).)))	chr16:31202300-31202522(+)$1	1	42	81	13.0214
..(((..((((..((..((......)).)).))))))).	chr11:5290596-5290848(-)$1	1	105	144	14.4597
(((((.(((((((((((((......))))))))))))).	chr11:57510233-57510464(+)$1	1	12	51	17.8631
(((.....(((.(((((((......)))))))..)))..	chr3:53259587-53259872(-)$1	1	31	70	14.2776
((.((((.(....((((......))))....).))))..	chr2:27294093-27294312(-)$1	1	40	79	12.8448
(((((((((.(((.(.((((((...)))....))).).)	chr1:156280252-156280538(-)$1	1	174	213	13.1267
((.((((...((((.((((......)))))))).)))).	chr15:44063537-44063788(+)$1	1	149	188	13.0500
((.(((((...(((((.((.....)).)))))))))).)	chr20:35869752-35870008(+)$1	1	137	176	12.6967

#PSSM
c : 0.22	: : 0.12	e : 0.10	i : 0.08	= : 0.08	! : 0.06	g : 0.06	[ : 0.05	d : 0.03	f : 0.03	" : 0.03	$ : 0.03	a : 0.03	b : 0.01	
c : 0.22	e : 0.12	: : 0.10	= : 0.10	! : 0.08	g : 0.08	d : 0.06	i : 0.06	" : 0.03	$ : 0.03	[ : 0.03	f : 0.01	b : 0.01	
c : 0.17	e : 0.13	[ : 0.10	= : 0.10	g : 0.10	! : 0.08	i : 0.08	d : 0.05	: : 0.03	" : 0.03	a : 0.03	b : 0.03	f : 0.01	
c : 0.13	d : 0.13	e : 0.12	i : 0.10	= : 0.10	g : 0.10	[ : 0.08	b : 0.06	! : 0.05	: : 0.03	" : 0.01	f : 0.01	$ : 0.01	
c : 0.18	d : 0.15	i : 0.10	= : 0.10	g : 0.10	e : 0.08	b : 0.06	[ : 0.05	: : 0.03	f : 0.03	! : 0.03	" : 0.01	$ : 0.01	
c : 0.18	d : 0.15	= : 0.12	i : 0.10	g : 0.10	e : 0.08	[ : 0.05	! : 0.05	b : 0.03	f : 0.03	a : 0.01	" : 0.01	h : 0.01	$ : 0.01	
d : 0.17	= : 0.17	c : 0.17	i : 0.10	g : 0.08	! : 0.06	e : 0.06	[ : 0.03	f : 0.03	" : 0.01	h : 0.01	# : 0.01	a : 0.01	$ : 0.01	
= : 0.17	[ : 0.12	d : 0.10	c : 0.10	! : 0.08	g : 0.08	i : 0.06	" : 0.06	# : 0.05	e : 0.05	$ : 0.03	a : 0.01	h : 0.01	f : 0.01	
= : 0.15	g : 0.13	d : 0.08	a : 0.08	" : 0.08	c : 0.08	# : 0.06	! : 0.06	i : 0.05	$ : 0.05	e : 0.05	[ : 0.03	h : 0.01	f : 0.01	
= : 0.13	[ : 0.12	" : 0.10	# : 0.10	g : 0.08	c : 0.08	! : 0.06	d : 0.06	$ : 0.05	f : 0.05	e : 0.05	i : 0.03	b : 0.01	h : 0.01	
= : 0.18	c : 0.12	g : 0.10	# : 0.08	! : 0.06	f : 0.06	i : 0.05	" : 0.05	[ : 0.05	$ : 0.05	e : 0.05	d : 0.05	b : 0.03	h : 0.01	
= : 0.18	g : 0.13	e : 0.13	f : 0.10	c : 0.08	d : 0.06	! : 0.05	$ : 0.05	# : 0.05	i : 0.03	" : 0.03	h : 0.01	b : 0.01	[ : 0.01	
= : 0.17	e : 0.15	g : 0.13	f : 0.10	c : 0.10	d : 0.06	# : 0.05	! : 0.05	$ : 0.05	" : 0.03	[ : 0.03	i : 0.01	h : 0.01	
= : 0.17	g : 0.13	e : 0.13	f : 0.12	d : 0.10	[ : 0.08	c : 0.06	! : 0.05	" : 0.03	i : 0.01	# : 0.01	$ : 0.01	a : 0.01	b : 0.01	
= : 0.17	e : 0.17	g : 0.13	f : 0.12	d : 0.10	c : 0.06	a : 0.05	! : 0.03	[ : 0.03	b : 0.03	i : 0.01	# : 0.01	" : 0.01	$ : 0.01	
= : 0.17	e : 0.15	! : 0.10	d : 0.10	f : 0.08	c : 0.08	[ : 0.08	g : 0.06	a : 0.03	i : 0.01	# : 0.01	r : 0.01	$ : 0.01	b : 0.01	" : 0.01	
c : 0.18	= : 0.15	[ : 0.15	! : 0.13	d : 0.10	g : 0.06	e : 0.06	f : 0.05	i : 0.01	r : 0.01	$ : 0.01	" : 0.01	
b : 0.25	c : 0.22	= : 0.15	[ : 0.05	g : 0.05	! : 0.05	d : 0.05	o : 0.03	e : 0.03	i : 0.01	r : 0.01	a : 0.01	" : 0.01	f : 0.01	
b : 0.34	c : 0.20	= : 0.12	a : 0.05	o : 0.05	[ : 0.05	d : 0.03	e : 0.03	i : 0.01	r : 0.01	! : 0.01	m : 0.01	f : 0.01	g : 0.01	
o : 0.51	n : 0.12	b : 0.10	c : 0.08	= : 0.05	a : 0.05	m : 0.03	l : 0.01	r : 0.01	
o : 0.56	n : 0.24	m : 0.06	c : 0.05	l : 0.03	r : 0.01	b : 0.01	
o : 0.56	n : 0.24	m : 0.08	l : 0.06	r : 0.01	c : 0.01	
o : 0.56	n : 0.24	m : 0.06	l : 0.06	i : 0.01	r : 0.01	a : 0.01	
o : 0.53	n : 0.24	m : 0.05	d : 0.05	l : 0.05	i : 0.01	r : 0.01	= : 0.01	] : 0.01	
o : 0.51	n : 0.12	c : 0.12	b : 0.08	= : 0.05	d : 0.05	i : 0.01	m : 0.01	l : 0.01	
b : 0.36	c : 0.24	= : 0.13	d : 0.06	a : 0.05	o : 0.05	e : 0.03	i : 0.01	f : 0.01	g : 0.01	
b : 0.27	c : 0.24	= : 0.13	] : 0.08	d : 0.06	a : 0.05	g : 0.03	e : 0.03	f : 0.03	i : 0.01	4 : 0.01	
2 : 0.18	] : 0.18	= : 0.13	c : 0.12	e : 0.08	f : 0.06	3 : 0.06	d : 0.03	g : 0.03	4 : 0.03	i : 0.01	b : 0.01	
2 : 0.18	= : 0.17	e : 0.10	f : 0.08	3 : 0.08	d : 0.06	c : 0.06	] : 0.06	g : 0.05	4 : 0.05	b : 0.03	i : 0.01	
= : 0.18	e : 0.13	f : 0.12	g : 0.12	c : 0.10	3 : 0.08	d : 0.08	a : 0.06	4 : 0.05	i : 0.01	b : 0.01	
= : 0.20	g : 0.13	e : 0.13	f : 0.12	c : 0.12	d : 0.08	] : 0.06	4 : 0.05	i : 0.01	3 : 0.01	2 : 0.01	6 : 0.01	
= : 0.20	e : 0.15	g : 0.13	f : 0.10	c : 0.08	d : 0.08	4 : 0.08	] : 0.03	i : 0.01	2 : 0.01	h : 0.01	6 : 0.01	3 : 0.01	a : 0.01	
= : 0.20	g : 0.13	e : 0.12	f : 0.08	2 : 0.08	c : 0.08	4 : 0.06	d : 0.05	a : 0.03	3 : 0.03	] : 0.03	i : 0.01	h : 0.01	6 : 0.01	
= : 0.18	g : 0.12	2 : 0.10	c : 0.10	e : 0.10	] : 0.08	4 : 0.08	3 : 0.06	f : 0.05	d : 0.03	i : 0.01	h : 0.01	6 : 0.01	
= : 0.18	g : 0.12	d : 0.12	c : 0.10	e : 0.10	3 : 0.06	4 : 0.06	f : 0.05	2 : 0.03	a : 0.03	b : 0.03	i : 0.01	8 : 0.01	h : 0.01	6 : 0.01	
= : 0.15	g : 0.15	c : 0.12	d : 0.10	2 : 0.08	] : 0.06	e : 0.06	3 : 0.05	4 : 0.05	i : 0.03	b : 0.03	8 : 0.01	h : 0.01	6 : 0.01	f : 0.01	
= : 0.15	d : 0.13	c : 0.12	g : 0.10	2 : 0.08	3 : 0.08	e : 0.06	] : 0.05	i : 0.05	4 : 0.05	a : 0.03	8 : 0.01	h : 0.01	f : 0.01	
d : 0.17	c : 0.15	= : 0.13	3 : 0.10	i : 0.08	g : 0.08	e : 0.05	2 : 0.05	4 : 0.05	] : 0.03	b : 0.01	8 : 0.01	h : 0.01	f : 0.01	
c : 0.15	= : 0.10	4 : 0.10	3 : 0.10	d : 0.08	i : 0.08	g : 0.08	e : 0.06	] : 0.06	2 : 0.05	b : 0.03	8 : 0.01	h : 0.01	f : 0.01	

#score	825.3319996787037
#seq	58
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_transcript_m3_run1.txt

#BEAR
ddd[cccpppppppccc]dddde	chr19:952705-952954(+)$1	249	10	33	14.1217
cc[ddddpppppppddddccc]b	chr17:79965224-79965458(+)$1	234	131	154	16.9779
iiiiiiipppppppiiiiiiiii	chr4:862468-862796(-)$1	328	187	210	15.9849
=======ppppppp=========	chr1:2171846-2172094(+)$1	248	183	206	16.6218
gggg[bbpppppppbbggggggg	chr18:46130461-46130703(+)$1	242	142	165	14.2900
cceeeeepppppppeeeee]ccc	chr9:127040542-127040793(+)$1	251	157	180	15.8404
b[eeeeepppppppeeeeebb]e	chr2:20401503-20401771(-)$1	268	110	133	15.4595
eeeecccpppppppccc]eeeee	chr9:137234468-137234721(+)$1	253	150	173	14.7152
"""ddddpppppppdddd22bb2	chr2:3307735-3308029(-)$1	294	133	156	17.0762
ggg[cccpppppppccc]ggggg	chr2:20418755-20419011(-)$1	256	85	108	15.6615
$$$ddddpppppppdddd333cc	chr5:139031197-139031459(+)$1	262	140	163	18.2023
ee[ddddpppppppddddeeeee	chr10:114712209-114712471(+)$1	262	32	55	16.2133
%%%ddddpppppppdddd4444c	chr11:2152456-2152662(-)$1	206	57	80	16.8685
=======ppppppp=========	chr1:2192071-2192316(+)$1	245	5	28	16.6218
!!eeeeepppppppeeeee22bb	chr1:2164005-2164293(+)$1	288	241	264	15.8679
dd[ddddpppppppdddd]dddd	chr9:95970997-95971259(+)$1	262	182	205	16.1475
dddddddpppppppdddd:cccm	chr16:588857-589107(+)$1	250	193	216	14.6927
!!eeeeepppppppeeeee]===	chr1:18002841-18003124(+)$1	283	119	142	16.7965
gggddddpppppppdddd22ggg	chr2:170606080-170606400(+)$1	320	30	53	17.0501
"""ddddpppppppdddd22eee	chr16:4739396-4739646(+)$1	250	224	247	17.4316
b!!ddddpppppppdddd4444b	chr17:80479914-80480182(+)$1	268	57	80	17.9574
""bbcccpppppppccc]bb]cc	chr17:47126704-47127038(+)$1	334	84	107	14.9783
gggg[bbpppppppbb]gggggg	chr19:945667-945925(+)$1	258	126	149	14.2112
eeeddddpppppppdddd]eeee	chr21:46859946-46860202(+)$1	256	136	159	16.1415
=======ppppppp=========	chr4:1240744-1241019(-)$1	275	89	112	16.6218
fff[cccpppppppcccffffff	chr17:851750-852107(-)$1	357	221	244	14.3057
$$$ddddpppppppdddd333cc	chr11:61633618-61633838(+)$1	220	151	174	18.2023
b!!ddddpppppppddddbb]gg	chr9:136898038-136898314(-)$1	276	141	164	16.8892
iiiiiiipppppppiiiiiiiii	chr2:20419554-20419808(-)$1	254	34	57	15.9849
%%%ddddpppppppdddd4444c	chr11:2152509-2152723(-)$1	214	118	141	16.8685
b[eeeeepppppppeeeee333b	chr9:136000085-136000377(-)$1	292	244	267	16.5958
%%%ddddpppppppdddd4444c	chr11:2152470-2152672(-)$1	202	67	90	16.8685
iiiiiiipppppppiiiiiiiii	chr20:62362305-62362586(+)$1	281	109	132	15.9849
b[eeeeepppppppeeeeebb]b	chr6:170686125-170686400(+)$1	275	156	179	15.4742
dddd[bbpppppppbb]dddd]c	chr16:85651262-85651542(+)$1	280	175	198	13.5756
cc[ddddpppppppddddccc]b	chr17:79965317-79965531(+)$1	214	38	61	16.9779
%%%ddddpppppppdddd4444c	chr11:2152462-2152670(-)$1	208	65	88	16.8685
iiiddddpppppppdddd]iiii	chr17:80511044-80511338(+)$1	294	93	116	17.5286
=======ppppppp=========	chr17:56167527-56167806(+)$1	279	215	238	16.6218
a!!ddddpppppppdddd]a22f	chr14:105357446-105357786(+)$1	340	100	123	17.4520
i[eeeeepppppppeeeee]iii	chr16:85673921-85674195(+)$1	274	91	114	16.4593
%%%ddddpppppppdddd4444c	chr11:2152446-2152649(-)$1	203	44	67	16.8685
cc[ddddpppppppdddd]ccc:	chr17:79477312-79477540(-)$1	228	151	174	16.2796
b!!ddddpppppppdddd]bb]d	chr7:223153-223462(+)$1	309	55	78	17.1071
iiiiiiipppppppiiiiiiiii	chr10:724129-724402(-)$1	273	161	184	15.9849
b!!ddddpppppppdddd22bb3	chr2:241566379-241566665(+)$1	286	101	124	17.0291
%%%ddddpppppppdddd4444c	chr11:2152556-2152764(-)$1	208	159	182	16.8685
%%%ddddpppppppdddd4444c	chr11:2152536-2152741(-)$1	205	136	159	16.8685
##eeeeepppppppeeeee333b	chr16:18801507-18801724(-)$1	217	106	129	16.9808
ggg[cccpppppppccc]ggggg	chr2:20418850-20419115(-)$1	265	189	212	15.6615
effffffpppppppffffff333	chr19:50018164-50018419(+)$1	255	165	188	13.7324
####cccpppppppccciiiiii	chr17:79780663-79780966(-)$1	303	251	274	16.6511
gggggggpppppppggggggg]a	chr6:7123161-7123424(+)$1	263	232	255	15.3320
hh!!cccpppppppccc22hhhh	chr9:136758791-136759039(-)$1	248	66	89	14.4193
ffeeeeepppppppeeeee]fff	chr20:60560653-60561087(-)$1	434	143	166	15.2099
##eeeeepppppppeeeee333b	chr13:113364112-113364416(+)$1	304	231	254	16.9808
ffeeeeepppppppeeeee]fff	chr21:46872097-46872363(+)$1	266	12	35	15.2099
b"""cccpppppppccc333bb2	chr13:113763414-113763756(+)$1	342	248	271	15.8122
iiiiiiipppppppiiiiiiiii	chr1:2204724-2204959(+)$1	235	135	158	15.9849
cc[ddddpppppppdddd]ccc:	chr14:95058979-95059196(+)$1	217	37	60	16.2796

#otherMatches

#Seq PSSM
GGCCUCAUGGACUUUGGAGCCUC	chr19:952705-952954(+)$1	249	10	33	14.1217
ACUGUCCAGUAUGCGGACGUGGC	chr17:79965224-79965458(+)$1	234	131	154	16.9779
CAUUGGUCUGCUUUACCGAUGGC	chr4:862468-862796(-)$1	328	187	210	15.9849
GGAUUUUAAGAAGCAGAGUUCUC	chr1:2171846-2172094(+)$1	248	183	206	16.6218
guggugugaucuuggcucacugc	chr18:46130461-46130703(+)$1	242	142	165	14.2900
GAGGGCUGUUUCCAGGUCUGUCC	chr9:127040542-127040793(+)$1	251	157	180	15.8404
CGCUCAGGGCCAUGCUGAGGCCU	chr2:20401503-20401771(-)$1	268	110	133	15.4595
GAGGAGGCUGCCUACCUGCCUUC	chr9:137234468-137234721(+)$1	253	150	173	14.7152
CCUGGGCGUUUCCAGCCCUUCAG	chr2:3307735-3308029(-)$1	294	133	156	17.0762
UGGGGCAAGGGGGGUGUGCCGUG	chr2:20418755-20419011(-)$1	256	85	108	15.6615
UACGGGUGAGCCAGACCCAAGCC	chr5:139031197-139031459(+)$1	262	140	163	18.2023
CUUGGUUUGUGUGCAGCCGGAAU	chr10:114712209-114712471(+)$1	262	32	55	16.2133
AUAUCUGUAUGGAUCAGGCCAAA	chr11:2152456-2152662(-)$1	206	57	80	16.8685
ugaggugauccuccugccucagc	chr1:2192071-2192316(+)$1	245	5	28	16.6218
CUGUUUAUUGAUCUUGGACUUUA	chr1:2164005-2164293(+)$1	288	241	264	15.8679
UGUGUGUUCUUUGUGCAUUCACA	chr9:95970997-95971259(+)$1	262	182	205	16.1475
accacacccggauaguguuuagu	chr16:588857-589107(+)$1	250	193	216	14.6927
ggCCAGGUGAGUUGUCUGGAUUC	chr1:18002841-18003124(+)$1	283	119	142	16.7965
UACUCCUACUCAAAGGGAACGUA	chr2:170606080-170606400(+)$1	320	30	53	17.0501
CCACACCUCCUCCUGGUGCUGGC	chr16:4739396-4739646(+)$1	250	224	247	17.4316
UGCGUCUACUGUGAGGAUCUUGA	chr17:80479914-80480182(+)$1	268	57	80	17.9574
CAGGCACGGAGGAAGUGACCAGC	chr17:47126704-47127038(+)$1	334	84	107	14.9783
CGGCUCCUGCUGCUGGUGCUGGG	chr19:945667-945925(+)$1	258	126	149	14.2112
CUGUGUGACUGCUCCGCACCAGC	chr21:46859946-46860202(+)$1	256	136	159	16.1415
AGUAGGAUCUUCCCUUUUACUCG	chr4:1240744-1241019(-)$1	275	89	112	16.6218
AAGCACCGAGUGAugguuuucac	chr17:851750-852107(-)$1	357	221	244	14.3057
CGCGGGCACAGCCAGCCCAAACC	chr11:61633618-61633838(+)$1	220	151	174	18.2023
UAAGCGAAGGGUCAUCGCAGCCC	chr9:136898038-136898314(-)$1	276	141	164	16.8892
GUGGUGCCCAGCUUGCACCAUCU	chr2:20419554-20419808(-)$1	254	34	57	15.9849
AUAUCUGUAUGGAUCAGGCCAAA	chr11:2152509-2152723(-)$1	214	118	141	16.8685
GAGGCGUCCCAUGAAUGCCAACC	chr9:136000085-136000377(-)$1	292	244	267	16.5958
AUAUCUGUAUGGAUCAGGCCAAA	chr11:2152470-2152672(-)$1	202	67	90	16.8685
UUCUCCUAGUUUGGGGGAGGACU	chr20:62362305-62362586(+)$1	281	109	132	15.9849
CACGAGCUCACGCUGCUCGGUGC	chr6:170686125-170686400(+)$1	275	156	179	15.4742
AAGCCAGAGACCGCCUUGCUUGC	chr16:85651262-85651542(+)$1	280	175	198	13.5756
ACUGUCCAGUAUGCGGACGUGGC	chr17:79965317-79965531(+)$1	214	38	61	16.9779
AUAUCUGUAUGGAUCAGGCCAAA	chr11:2152462-2152670(-)$1	208	65	88	16.8685
GGAGCUCACCCAUGGAGCAUUUU	chr17:80511044-80511338(+)$1	294	93	116	17.5286
CUGUUUUGAAAAUAAAGAUAGGU	chr17:56167527-56167806(+)$1	279	215	238	16.6218
CAGGGCCCUCUCCAGGCCAGGCG	chr14:105357446-105357786(+)$1	340	100	123	17.4520
GUGGGGCUGGAACUGCUCUCUUG	chr16:85673921-85674195(+)$1	274	91	114	16.4593
AUAUCUGUAUGGAUCAGGCCAAA	chr11:2152446-2152649(-)$1	203	44	67	16.8685
AGUCUGUGUGGCCAGCAGCCUCU	chr17:79477312-79477540(-)$1	228	151	174	16.2796
AAAGCCUGAAGUGUGGGCGUGUA	chr7:223153-223462(+)$1	309	55	78	17.1071
UUUCCAGAGGAAAGCUGGGAAGG	chr10:724129-724402(-)$1	273	161	184	15.9849
GAAGUGGAAGGGCCCCAUCCCCA	chr2:241566379-241566665(+)$1	286	101	124	17.0291
AUAUCUGUAUGGAUCAGGCCAAA	chr11:2152556-2152764(-)$1	208	159	182	16.8685
AUAUCUGUAUGGAUCAGGCCAAA	chr11:2152536-2152741(-)$1	205	136	159	16.8685
UCUGAGAGCUCCAAUUUCAUCCG	chr16:18801507-18801724(-)$1	217	106	129	16.9808
UGGGGCAAGGGGGGUGUGCCGUG	chr2:20418850-20419115(-)$1	265	189	212	15.6615
cagccugaaccucccaggcucaa	chr19:50018164-50018419(+)$1	255	165	188	13.7324
UGAAGUGGUCAGGAUACAGGACA	chr17:79780663-79780966(-)$1	303	251	274	16.6511
UGuuuuuuuuuuuuggagacaga	chr6:7123161-7123424(+)$1	263	232	255	15.3320
GCUGCUGUGUGGGUCAGGUGCGG	chr9:136758791-136759039(-)$1	248	66	89	14.4193
ggaugguguuuagaaccauacuc	chr20:60560653-60561087(-)$1	434	143	166	15.2099
UCUGCCCUGGAGCUGGGCAUCAG	chr13:113364112-113364416(+)$1	304	231	254	16.9808
GGCUGGGAAGGAGGCCUGGAUCC	chr21:46872097-46872363(+)$1	266	12	35	15.2099
CCGUGAGUUCCCACCUCCUUGAG	chr13:113763414-113763756(+)$1	342	248	271	15.8122
GCUGAGAUGGGACUUCUCAGCUU	chr1:2204724-2204959(+)$1	235	135	158	15.9849
CCugcaugggaaaaauguuggaa	chr14:95058979-95059196(+)$1	217	37	60	16.2796

#DB
(((.(((.......))).))))(	chr19:952705-952954(+)$1	1	10	33	14.1217
((.((((.......))))))).)	chr17:79965224-79965458(+)$1	1	131	154	16.9779
(((((((.......)))))))))	chr4:862468-862796(-)$1	1	187	210	15.9849
(((((((.......)))))))))	chr1:2171846-2172094(+)$1	1	183	206	16.6218
((((.((.......)))))))))	chr18:46130461-46130703(+)$1	1	142	165	14.2900
(((((((.......))))).)))	chr9:127040542-127040793(+)$1	1	157	180	15.8404
(.(((((.......))))))).)	chr2:20401503-20401771(-)$1	1	110	133	15.4595
(((((((.......))).)))))	chr9:137234468-137234721(+)$1	1	150	173	14.7152
...((((.......))))..)).	chr2:3307735-3308029(-)$1	1	133	156	17.0762
(((.(((.......))).)))))	chr2:20418755-20419011(-)$1	1	85	108	15.6615
...((((.......))))...))	chr5:139031197-139031459(+)$1	1	140	163	18.2023
((.((((.......)))))))))	chr10:114712209-114712471(+)$1	1	32	55	16.2133
...((((.......))))....)	chr11:2152456-2152662(-)$1	1	57	80	16.8685
(((((((.......)))))))))	chr1:2192071-2192316(+)$1	1	5	28	16.6218
..(((((.......)))))..))	chr1:2164005-2164293(+)$1	1	241	264	15.8679
((.((((.......)))).))))	chr9:95970997-95971259(+)$1	1	182	205	16.1475
)))((((.......)))).(((.	chr16:588857-589107(+)$1	1	193	216	14.6927
..(((((.......))))).)))	chr1:18002841-18003124(+)$1	1	119	142	16.7965
(((((((.......))))..)))	chr2:170606080-170606400(+)$1	1	30	53	17.0501
...((((.......))))..)))	chr16:4739396-4739646(+)$1	1	224	247	17.4316
(..((((.......))))....)	chr17:80479914-80480182(+)$1	1	57	80	17.9574
..(((((.......))).)).))	chr17:47126704-47127038(+)$1	1	84	107	14.9783
((((.((.......)).))))))	chr19:945667-945925(+)$1	1	126	149	14.2112
(((((((.......)))).))))	chr21:46859946-46860202(+)$1	1	136	159	16.1415
(((((((.......)))))))))	chr4:1240744-1241019(-)$1	1	89	112	16.6218
(((.(((.......)))))))))	chr17:851750-852107(-)$1	1	221	244	14.3057
...((((.......))))...))	chr11:61633618-61633838(+)$1	1	151	174	18.2023
(..((((.......)))))).))	chr9:136898038-136898314(-)$1	1	141	164	16.8892
(((((((.......)))))))))	chr2:20419554-20419808(-)$1	1	34	57	15.9849
...((((.......))))....)	chr11:2152509-2152723(-)$1	1	118	141	16.8685
(.(((((.......)))))...)	chr9:136000085-136000377(-)$1	1	244	267	16.5958
...((((.......))))....)	chr11:2152470-2152672(-)$1	1	67	90	16.8685
(((((((.......)))))))))	chr20:62362305-62362586(+)$1	1	109	132	15.9849
(.(((((.......))))))).)	chr6:170686125-170686400(+)$1	1	156	179	15.4742
((((.((.......)).)))).)	chr16:85651262-85651542(+)$1	1	175	198	13.5756
((.((((.......))))))).)	chr17:79965317-79965531(+)$1	1	38	61	16.9779
...((((.......))))....)	chr11:2152462-2152670(-)$1	1	65	88	16.8685
(((((((.......)))).))))	chr17:80511044-80511338(+)$1	1	93	116	17.5286
(((((((.......)))))))))	chr17:56167527-56167806(+)$1	1	215	238	16.6218
(..((((.......)))).)..)	chr14:105357446-105357786(+)$1	1	100	123	17.4520
(.(((((.......))))).)))	chr16:85673921-85674195(+)$1	1	91	114	16.4593
...((((.......))))....)	chr11:2152446-2152649(-)$1	1	44	67	16.8685
((.((((.......)))).))).	chr17:79477312-79477540(-)$1	1	151	174	16.2796
(..((((.......)))).)).)	chr7:223153-223462(+)$1	1	55	78	17.1071
(((((((.......)))))))))	chr10:724129-724402(-)$1	1	161	184	15.9849
(..((((.......))))..)).	chr2:241566379-241566665(+)$1	1	101	124	17.0291
...((((.......))))....)	chr11:2152556-2152764(-)$1	1	159	182	16.8685
...((((.......))))....)	chr11:2152536-2152741(-)$1	1	136	159	16.8685
..(((((.......)))))...)	chr16:18801507-18801724(-)$1	1	106	129	16.9808
(((.(((.......))).)))))	chr2:20418850-20419115(-)$1	1	189	212	15.6615
(((((((.......))))))...	chr19:50018164-50018419(+)$1	1	165	188	13.7324
....(((.......)))))))))	chr17:79780663-79780966(-)$1	1	251	274	16.6511
(((((((.......))))))).)	chr6:7123161-7123424(+)$1	1	232	255	15.3320
((..(((.......)))..))))	chr9:136758791-136759039(-)$1	1	66	89	14.4193
(((((((.......))))).)))	chr20:60560653-60561087(-)$1	1	143	166	15.2099
..(((((.......)))))...)	chr13:113364112-113364416(+)$1	1	231	254	16.9808
(((((((.......))))).)))	chr21:46872097-46872363(+)$1	1	12	35	15.2099
(...(((.......)))...)).	chr13:113763414-113763756(+)$1	1	248	271	15.8122
(((((((.......)))))))))	chr1:2204724-2204959(+)$1	1	135	158	15.9849
((.((((.......)))).))).	chr14:95058979-95059196(+)$1	1	37	60	16.2796

#PSSM
b : 0.13	i : 0.11	% : 0.11	g : 0.09	c : 0.08	d : 0.06	= : 0.06	e : 0.06	" : 0.05	f : 0.05	# : 0.05	$ : 0.03	! : 0.03	a : 0.01	h : 0.01	
% : 0.11	! : 0.11	i : 0.09	g : 0.09	c : 0.08	d : 0.06	= : 0.06	[ : 0.06	" : 0.06	f : 0.06	e : 0.05	# : 0.05	$ : 0.03	h : 0.01	
e : 0.21	% : 0.11	[ : 0.09	i : 0.09	g : 0.09	! : 0.09	= : 0.06	d : 0.05	" : 0.05	$ : 0.03	f : 0.03	b : 0.01	# : 0.01	
d : 0.44	e : 0.19	i : 0.08	[ : 0.06	= : 0.06	g : 0.05	b : 0.01	f : 0.01	# : 0.01	! : 0.01	" : 0.01	
d : 0.43	e : 0.18	c : 0.15	i : 0.08	= : 0.06	[ : 0.05	f : 0.01	g : 0.01	
d : 0.43	e : 0.18	c : 0.15	i : 0.08	= : 0.06	b : 0.05	f : 0.01	g : 0.01	
d : 0.43	e : 0.18	c : 0.15	i : 0.08	= : 0.06	b : 0.05	f : 0.01	g : 0.01	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
d : 0.43	e : 0.18	c : 0.15	i : 0.08	= : 0.06	b : 0.05	f : 0.01	g : 0.01	
d : 0.43	e : 0.18	c : 0.15	i : 0.08	= : 0.06	b : 0.05	f : 0.01	g : 0.01	
d : 0.43	e : 0.18	c : 0.15	i : 0.08	= : 0.06	g : 0.03	] : 0.03	f : 0.01	
d : 0.44	e : 0.18	i : 0.09	] : 0.08	= : 0.06	g : 0.05	f : 0.03	2 : 0.01	3 : 0.01	
e : 0.21	4 : 0.13	] : 0.11	i : 0.09	g : 0.08	2 : 0.08	= : 0.06	3 : 0.05	d : 0.03	c : 0.03	b : 0.03	f : 0.03	: : 0.01	
4 : 0.13	i : 0.11	3 : 0.09	c : 0.08	g : 0.08	] : 0.08	b : 0.08	2 : 0.08	= : 0.06	d : 0.05	e : 0.05	f : 0.03	a : 0.01	h : 0.01	
i : 0.13	4 : 0.13	c : 0.09	g : 0.09	b : 0.09	3 : 0.09	= : 0.08	e : 0.06	d : 0.05	f : 0.05	2 : 0.03	] : 0.03	h : 0.01	
i : 0.13	4 : 0.13	] : 0.11	c : 0.11	g : 0.09	= : 0.08	e : 0.06	b : 0.06	3 : 0.06	f : 0.05	d : 0.03	2 : 0.01	h : 0.01	
c : 0.19	b : 0.13	i : 0.13	e : 0.09	g : 0.09	= : 0.08	f : 0.06	2 : 0.03	d : 0.03	: : 0.03	3 : 0.03	m : 0.01	a : 0.01	h : 0.01	

#score	970.4721932953125
#seq	60
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_CDS_m1_run2.txt

#BEAR
gg[a[bb[eeeee[cccnnnnnccc]eeeee]bba]ggg	chr8:143809067-143809362(+)$1	295	73	112	14.1497
=========[ccc[cccnnnnnccc]ccc==========	chr6:138199645-138199928(+)$1	283	216	255	18.1941
eeee[bb[bb[bb[cccnnnnnccc]bb]bbbb]eeeee	chr20:61542726-61542980(-)$1	254	172	211	12.3166
cc!!a!!gggggggrrrrrrrrrggggggg22a333ccc	chr16:52473467-52473702(-)$1	235	60	99	11.1624
========[ccc[bb!!bbnnnnnbb22bb22ccc]===	chr10:104181585-104181874(+)$1	289	31	70	12.2458
cc####eeeee####bbnnnnnbb4444eeeeecccccc	chr16:30976162-30976428(+)$1	266	147	186	14.2932
========dddd!!bbbbmmmmbb4444bb22dddd]==	chrX:54209403-54209616(-)$1	213	31	70	12.0983
ee:bb!!dddd"""cccnnnnnccc4444dddd]bbddd	chr3:155571259-155571540(-)$1	281	130	169	13.1943
fffff####cccbb[cccnnnnnccc]bb22ccc4444f	chr8:103663432-103663712(-)$1	280	133	172	12.8015
gggggggffffff[cccnnnnnccc22ffffff]ggggg	chr9:140136982-140137248(+)$1	266	127	166	14.7525
gggggg[a[ccc[dddd[bblllbb333dddd]ccc]ag	chr2:110373027-110373251(+)$1	224	65	104	11.4758
""ffffffdddd[ddddnnnnndddd]dddd]ffffff]	chr9:140137368-140137622(+)$1	254	21	60	11.9164
iiiiiii!!ccc[ddddnnnnndddd]ccc22iiiiiii	chr2:208631716-208632021(-)$1	305	62	101	16.7086
!!bbccceeeee[cccooooooccceeeee]ccc]bb22	chrX:51639732-51639985(+)$1	253	161	200	11.3243
###dddd"""cccddddnnnnndddd]ccc4444dddd3	chr17:7365410-7365683(-)$1	273	102	141	13.3341
!ddddcccccc####bbnnnnnbb333ccc]ccc]dddd	chr1:8418342-8418601(-)$1	259	157	196	14.1972
ff:==========!!cccmmmmccc4444==========	chr7:150068798-150069022(+)$1	224	134	173	14.9235
""ccc!!ggggggg!!allla22ggggggg22ccc]eee	chr7:32598594-32598912(+)$1	318	248	287	11.4013
b[hhhhhhhh"""ccc[annnnna]ccc333hhhhhhhh	chr9:71836044-71836287(+)$1	243	199	238	11.8720
dd[ccc[eeeee!!ddddllldddd4444eeeee]ccc]	chr19:33792866-33793104(-)$1	238	114	153	12.4297
ffffdddd[ccc"""cccmmmmccc22cccdddd333ff	chr17:41477062-41477302(+)$1	240	24	63	11.7039
ggggggg[gggggggddddllldddd]ggggggg]gggg	chr21:34923293-34923512(+)$1	219	154	193	12.5881
==========[bb[cccnnnnncccbb============	chr4:8228913-8229167(+)$1	254	204	243	17.4871
==================mmmm=================	chr19:46289567-46289809(-)$1	242	102	141	15.1275
gggg"""ccc"""ddddnnnnndddd333ccc333gggg	chr3:49049622-49049845(+)$1	223	173	212	16.7261
hhhhhhggggggg[cccnnnnnccc333ggggggg6666	chr5:137089521-137089767(-)$1	246	50	89	13.7466
ffffff[bb####ddddnnnnndddd4444bbffffff2	chr19:57802123-57802368(+)$1	245	70	109	13.3437
ccc"""bb####ddddoooooodddd4444bb]ccc666	chr3:5025186-5025446(+)$1	260	76	115	11.3416
===========!!ccc[bblllbb]ccc4444=======	chr20:279039-279337(+)$1	298	104	143	15.4184
iiiiggggggg####bboooooobb333ggggggg]iii	chr22:21799526-21799777(+)$1	251	155	194	15.5242
eee[aeeeeeccc[cccnnnnnccc333ccc]eeeee]a	chr6:88411155-88411418(-)$1	263	19	58	15.0371
=========="""bb[bblllbb]bb=============	chr2:27566276-27566487(-)$1	211	78	117	14.2553
gg####ffffff[cccnnnnnccc]ffffff22gggggg	chr17:7369053-7369303(-)$1	250	11	50	12.1015
==========####bboooooobb22==========::h	chr17:1945862-1946121(+)$1	259	174	213	13.7056
f[bb[bb[ccc[a[cccnnnnncccacccbb22bbffff	chr14:21560400-21560640(-)$1	240	83	122	13.5664
eeeeffffff####ddddllldddd4444ffffffccc[	chr7:150068936-150069173(+)$1	237	40	79	11.8412
"==========!!cccooooooccc4444==========	chr14:23450542-23450813(-)$1	271	33	72	18.2044
iiiiiiiiieeeeecccooooooccc]eeeee>>>>>>>	chr1:234742939-234743183(-)$1	244	48	87	11.9166
gggg[bb"""bb[cccccclllccc333cccbb333bbg	chr1:154987298-154987560(+)$1	262	178	217	14.0921
dd[ccc"""bb!!bb[aooooooa]bb4444bb4444cc	chr2:42522189-42522410(+)$1	221	158	197	12.6863
ccc$$$$$bb[bb[cccnnnnnccc]bb]bb4444ccc:	chr3:5024997-5025289(+)$1	292	230	269	12.3594
cdddd!!eeeee"""bbnnnnnbb333eeeee22dddd2	chr10:79800268-79800495(+)$1	227	166	205	12.5120
iiiiiiiii$$$$$cccnnnnnccc4444iiiiiiiii:	chr2:21225660-21225875(-)$1	215	133	172	17.0374
[ffffff####bb[cccnnnnnccc]bb333ffffffcc	chr10:43882790-43883052(-)$1	262	163	202	14.4149
ccceeeee[eeeeecccnnnnnccc4444eeeee]eeee	chr5:43298715-43298959(-)$1	244	89	128	13.9221
cc[ccc!!ccc[a[a[ammmma]a]a]ccc22ccc]ccc	chr12:124017855-124018167(-)$1	312	218	257	13.0096
=====[ccc[bb[fffffflllffffffbb]ccc=====	chr17:48941037-48941272(-)$1	235	128	167	11.3727
=======$$$$$bb[bbnnnnnbb]bb4444========	chr4:187524870-187525145(-)$1	275	36	75	15.5191
=====!!aa!!cccqqqqqqqqccc22a]a22=======	chr8:103663691-103663976(-)$1	285	28	67	12.2240
ggggggg[accc[eeeeellleeeeeccc]a]ggggggg	chr22:50728433-50728673(-)$1	240	42	81	11.9028
============!!cccooooooccc22===========	chr5:73931095-73931331(-)$1	236	196	235	17.5420
=======[iiiiiiiiinnnnniiiiiiiii55555===	chr20:62679938-62680215(-)$1	277	111	150	12.4593
hhhhhhh!!bb!!cccooooooccc22bb333hhhhhhh	chr16:68055664-68055946(-)$1	282	180	219	12.5233
eeeeeeeeee!!addddnnnnndddd]a22eeeee]eee	chr11:14666028-14666291(+)$1	263	189	228	12.2051
ffffff!!bb[ddddcccnnnnnccc]dddd]bb]ffff	chr16:29818696-29819002(+)$1	306	235	274	11.7137
iiiiii$$$$$ccc[cccmmmmccc22ccc22iiiiiii	chr5:139060260-139060541(+)$1	281	178	217	14.0959
===[dddd$$$$$ddddmmmmdddd22dddd]=======	chr17:25636100-25636328(+)$1	228	94	133	11.7215
a!!ccc!!bb"""cccmmmmcccbb22ccc22a]fffff	chr14:23450805-23451027(-)$1	222	19	58	11.6232

#otherMatches

#Seq PSSM
GGGACGACCGCGCGUUCUACCUGGAGGCGCGCUUUGUCA	chr8:143809067-143809362(+)$1	295	73	112	14.1497
CUGAGGGGCUCCCUGGCAUGGCGCUCGGGGCCUCUCGGG	chr6:138199645-138199928(+)$1	283	216	255	18.1941
CCACAGCAGCAGCUGGGCCUGUCCCUGCGGCGCAGUGGG	chr20:61542726-61542980(-)$1	254	172	211	12.3166
CGAACAUUGGGGCUCCACUGAUAAGCUCCAUGGGAACGA	chr16:52473467-52473702(-)$1	235	60	99	11.1624
UGGCGCCGUGUCACGAAUGGCUGUCAGACGAGGACCUGG	chr10:104181585-104181874(+)$1	289	31	70	12.2458
AGCCCAGCCGGCCCACCGACCAGGACUACCGGCCUCCUG	chr16:30976162-30976428(+)$1	266	147	186	14.2932
GGGCCGUGGUGCCCGUGGACCUCCUAAAACUCGCGCGCA	chrX:54209403-54209616(-)$1	213	31	70	12.0983
CCCCGUUGGUUGAUGCGGUCUACGUUAAGAACUUCGGUC	chr3:155571259-155571540(-)$1	281	130	169	13.1943
GAGUUCAAAGCCUCCGGUGGUGAGCCCGAAUGGCACCAG	chr8:103663432-103663712(-)$1	280	133	172	12.8015
UGGGUACCCUCCUCAUCAGCAAGAUCCGGGAGGAGUACC	chr9:140136982-140137248(+)$1	266	127	166	14.7525
ACCGCCCUGCACUUGGCAGCCAUGCACGGCCACGUGGAG	chr2:110373027-110373251(+)$1	224	65	104	11.4758
GCGCUUCCCAGGCCAGCUCAAUGCUGACCUGCGGAAGCU	chr9:140137368-140137622(+)$1	254	21	60	11.9164
UGCUCAUGCUCAAGUACUUCAUGUGCCUGGUGGUGGGCA	chr2:208631716-208632021(-)$1	305	62	101	16.7086
GACUCCACCUGGAUGGCAGACCCCACCGGGCUGGCAGGG	chrX:51639732-51639985(+)$1	253	161	200	11.3243
UGGAGGGGAUAGGGGCUGCCAAAGUCACUUUCUACCCUG	chr17:7365410-7365683(-)$1	273	102	141	13.3341
CCCAGCUGCGGCCCGAGAUGAGCUACCCUGACAGACUGG	chr1:8418342-8418601(-)$1	259	157	196	14.1972
UGAGGCCCUGGAGGAGGCCGCAGCCAAGGCUCUggggcc	chr7:150068798-150069022(+)$1	224	134	173	14.9235
GAAAGUGACUGGGAAACUUUGGAUCCUAGUGUCUUAGAG	chr7:32598594-32598912(+)$1	318	248	287	11.4013
GAGCGGGCCUACAGCCCGGAGUACAGGCGCGGGGCCCGC	chr9:71836044-71836287(+)$1	243	199	238	11.8720
gcgcccgcgggccccggcggcgccgUCAUGCCCGGGGGA	chr19:33792866-33793104(-)$1	238	114	153	12.4297
CGCCUUAGCUCACUAUGGGGAACCACUUGACUGAGAUGG	chr17:41477062-41477302(+)$1	240	24	63	11.7039
GGCGCCAGAGUUGCCUGGGCAGCCUGUGGCAACUGUGGC	chr21:34923293-34923512(+)$1	219	154	193	12.5881
UGGGGCGGCUGUGCAGCAGGAGGCUCAAGCUGUCCCAGG	chr4:8228913-8229167(+)$1	254	204	243	17.4871
GGUCACCGUGUGGUCCUUCACCGAGGGCCGCGUGGUGGC	chr19:46289567-46289809(-)$1	242	102	141	15.1275
GAUUGUGUCUGCUUGGUGUGGAGCCAUGAAGGUGAGAUC	chr3:49049622-49049845(+)$1	223	173	212	16.7261
CCUCAAUGUGCAGACGAGUGAGUCGGGCCUGCGCGGCCA	chr5:137089521-137089767(-)$1	246	50	89	13.7466
UCAAGAUGGGCCAUCUGAAAUGCAGGAAUACUUUUUGAG	chr19:57802123-57802368(+)$1	245	70	109	13.3437
GCUCAUGCCCCAGAGACUCCCUUCUCCCUUGCCAGCUCA	chr3:5025186-5025446(+)$1	260	76	115	11.3416
AGGGGGAGGGCGGGGUCAGGCACUUGCCAGGGGCCUUCU	chr20:279039-279337(+)$1	298	104	143	15.4184
CACGGCCUCUGUCAUCCAAGCUCGGUAUCAGGGGCUCGU	chr22:21799526-21799777(+)$1	251	155	194	15.5242
GCGUGCGGAGCCACUCUGAAAAGGACUCUGGAUUUCGAC	chr6:88411155-88411418(-)$1	263	19	58	15.0371
GGGGUCGGCUAUGUUGCCCUGGGGGAGGCCGGCCCCGUG	chr2:27566276-27566487(-)$1	211	78	117	14.2553
GGUCCUGCAGGGGUGGACGCCUCAGCCCUGCCUCCACCA	chr17:7369053-7369303(-)$1	250	11	50	12.1015
GGCUGGGGCCUUUUGACGGCCUUCUUGGUUUCAGCCAAG	chr17:1945862-1946121(+)$1	259	174	213	13.7056
UCGAUCAUGCGUGUCCGGUGUGCGGCCGCUGCUUCAAGG	chr14:21560400-21560640(-)$1	240	83	122	13.5664
ccaggggccgccccgcggugaccgccccccggcccggUG	chr7:150068936-150069173(+)$1	237	40	79	11.8412
CCCGGCCCUGGGCAGCCCUGGAGCUCUAGCCGGGGCCGG	chr14:23450542-23450813(-)$1	271	33	72	18.2044
GUGCUGCACCCUCUGCCACGAGCGGCUGGAGGACACCCA	chr1:234742939-234743183(-)$1	244	48	87	11.9166
GCAGCGCCAACAUGCCAGCUGUGCUCCAGGCUGCCCGCC	chr1:154987298-154987560(+)$1	262	178	217	14.0921
CUUCUGGACCUGGAGCGGCAAUUCACUAACAAGAAAACA	chr2:42522189-42522410(+)$1	221	158	197	12.6863
AGCUUCAUGAACCCAGACAAGAUCUCGGCUCCCUUGCUC	chr3:5024997-5025289(+)$1	292	230	269	12.3594
AUUAAUAAACUAAAAACUUCAUGUGUCUGGUUGUUUGAA	chr10:79800268-79800495(+)$1	227	166	205	12.5120
GAAAGUCAAGCAUCUGAUUGACUCACUCAUUGAUUUUCU	chr2:21225660-21225875(-)$1	215	133	172	17.0374
AGGCAAGAUUACAGGGGAAGCGUUCGUGCAGUUUGCCUC	chr10:43882790-43883052(-)$1	262	163	202	14.4149
CUCUCUUUGCAUGACUGUGGUUCAGAAUCUUAUGGAGAG	chr5:43298715-43298959(-)$1	244	89	128	13.9221
GUACGACAUCGCGUCGCUUGUGGGCCACGAGUUCGAGCG	chr12:124017855-124018167(-)$1	312	218	257	13.0096
AUUGAUGAUGUUCGUGGCAAUCUGCCACAGGAUCUUAGU	chr17:48941037-48941272(-)$1	235	128	167	11.3727
AGUUGUCAUCUUUGACAUACAUUGACAUUAGGGUAAUUG	chr4:187524870-187525145(-)$1	275	36	75	15.5191
UGUGUCACCAAACAGAUCCAAAUGUGAGAGAAACACAGU	chr8:103663691-103663976(-)$1	285	28	67	12.2240
UCUCCCUCCGCCUGUUCUACGAGGACGGCAGCGGGGAGA	chr22:50728433-50728673(-)$1	240	42	81	11.9028
GGUUGGGGGGCACACGGCCGCAACUGGCUGCCUCCCGGC	chr5:73931095-73931331(-)$1	236	196	235	17.5420
GUCUGGCUCGGCUCGCGCCUUCCGCGAGCUGCCCCCGCU	chr20:62679938-62680215(-)$1	277	111	150	12.4593
CCCGAGACAUACUUCUCUGCACAGACAUAGCCUCUCGGG	chr16:68055664-68055946(-)$1	282	180	219	12.5233
GGUGCUGAGCUGCGUAGGGCUGCUGCUGACGCUCGCGCA	chr11:14666028-14666291(+)$1	263	189	228	12.2051
CGGAAGAACCAUGCCUGCGAGAUGUGUGGCAAGGCCUUC	chr16:29818696-29819002(+)$1	306	235	274	11.7137
GCUGCCUCCCUGUUGGCCAAUGGGCAUGACCUGGCGGCG	chr5:139060260-139060541(+)$1	281	178	217	14.0959
GCUUGUGACUUUUCUCCUGAUGGAGCAUUACUGGCUACU	chr17:25636100-25636328(+)$1	228	94	133	11.7215
GCCCUGCAGCAAUCGCACCAGCGGCAUCAGCAUGGGCUA	chr14:23450805-23451027(-)$1	222	19	58	11.6232

#DB
((.(.((.(((((.(((.....))).))))).))).)))	chr8:143809067-143809362(+)$1	1	73	112	14.1497
(((((((((.(((.(((.....))).)))))))))))))	chr6:138199645-138199928(+)$1	1	216	255	18.1941
((((.((.((.((.(((.....))).)).)))).)))))	chr20:61542726-61542980(-)$1	1	172	211	12.3166
((..(..(((((((.........)))))))..)...)))	chr16:52473467-52473702(-)$1	1	60	99	11.1624
((((((((.(((.((..((.....))..))..))).)))	chr10:104181585-104181874(+)$1	1	31	70	12.2458
((....(((((....((.....))....))))))))(((	chr16:30976162-30976428(+)$1	1	147	186	14.2932
((((((((((((..((((....))....))..)))).))	chrX:54209403-54209616(-)$1	1	31	70	12.0983
)).((..((((...(((.....)))....)))).))(((	chr3:155571259-155571540(-)$1	1	130	169	13.1943
(((((....(((((.(((.....))).))..)))....)	chr8:103663432-103663712(-)$1	1	133	172	12.8015
(((((((((((((.(((.....)))..)))))).)))))	chr9:140136982-140137248(+)$1	1	127	166	14.7525
((((((.(.(((.((((.((...))...)))).))).))	chr2:110373027-110373251(+)$1	1	65	104	11.4758
..((((((((((.((((.....)))).)))).)))))).	chr9:140137368-140137622(+)$1	1	21	60	11.9164
(((((((..(((.((((.....)))).)))..)))))))	chr2:208631716-208632021(-)$1	1	62	101	16.7086
..((((((((((.(((......)))))))).))).))..	chrX:51639732-51639985(+)$1	1	161	200	11.3243
...((((...(((((((.....)))).)))....)))).	chr17:7365410-7365683(-)$1	1	102	141	13.3341
.((((((((((....((.....))...))).))).))))	chr1:8418342-8418601(-)$1	1	157	196	14.1972
)).((((((((((..(((....)))....))))))))))	chr7:150068798-150069022(+)$1	1	134	173	14.9235
..(((..(((((((..(...)..)))))))..))).)))	chr7:32598594-32598912(+)$1	1	248	287	11.4013
(.((((((((...(((.(.....).)))...))))))))	chr9:71836044-71836287(+)$1	1	199	238	11.8720
((.(((.(((((..((((...))))....))))).))).	chr19:33792866-33793104(-)$1	1	114	153	12.4297
((((((((.(((...(((....)))..)))))))...))	chr17:41477062-41477302(+)$1	1	24	63	11.7039
(((((((.(((((((((((...)))).))))))).))))	chr21:34923293-34923512(+)$1	1	154	193	12.5881
((((((((((.((.(((.....)))))))))))))))))	chr4:8228913-8229167(+)$1	1	204	243	17.4871
((((((((((((((((((....)))))))))))))))))	chr19:46289567-46289809(-)$1	1	102	141	15.1275
((((...(((...((((.....))))...)))...))))	chr3:49049622-49049845(+)$1	1	173	212	16.7261
(((((((((((((.(((.....)))...)))))))....	chr5:137089521-137089767(-)$1	1	50	89	13.7466
((((((.((....((((.....))))....)))))))).	chr19:57802123-57802368(+)$1	1	70	109	13.3437
(((...((....((((......))))....)).)))...	chr3:5025186-5025446(+)$1	1	76	115	11.3416
(((((((((((..(((.((...)).)))....)))))))	chr20:279039-279337(+)$1	1	104	143	15.4184
(((((((((((....((......))...))))))).)))	chr22:21799526-21799777(+)$1	1	155	194	15.5242
(((.(((((((((.(((.....)))...))).))))).)	chr6:88411155-88411418(-)$1	1	19	58	15.0371
((((((((((...((.((...)).)))))))))))))))	chr2:27566276-27566487(-)$1	1	78	117	14.2553
((....((((((.(((.....))).))))))..))))))	chr17:7369053-7369303(-)$1	1	11	50	12.1015
((((((((((....((......))..))))))))))..(	chr17:1945862-1946121(+)$1	1	174	213	13.7056
(.((.((.(((.(.(((.....)))))))))..))))))	chr14:21560400-21560640(-)$1	1	83	122	13.5664
))))((((((....((((...))))....))))))(((.	chr7:150068936-150069173(+)$1	1	40	79	11.8412
.((((((((((..(((......)))....))))))))))	chr14:23450542-23450813(-)$1	1	33	72	18.2044
(((((((((((((((((......))).))))).......	chr1:234742939-234743183(-)$1	1	48	87	11.9166
((((.((...((.((((((...)))...)))))...)))	chr1:154987298-154987560(+)$1	1	178	217	14.0921
((.(((...((..((.(......).))....))....))	chr2:42522189-42522410(+)$1	1	158	197	12.6863
(((.....((.((.(((.....))).)).))....))).	chr3:5024997-5025289(+)$1	1	230	269	12.3594
(((((..(((((...((.....))...)))))..)))).	chr10:79800268-79800495(+)$1	1	166	205	12.5120
(((((((((.....(((.....)))....))))))))).	chr2:21225660-21225875(-)$1	1	133	172	17.0374
.((((((....((.(((.....))).))...))))))))	chr10:43882790-43883052(-)$1	1	163	202	14.4149
)))(((((.((((((((.....)))....))))).))))	chr5:43298715-43298959(-)$1	1	89	128	13.9221
((.(((..(((.(.(.(....).).).)))..))).)))	chr12:124017855-124018167(-)$1	1	218	257	13.0096
(((((.(((.((.((((((...)))))))).))))))))	chr17:48941037-48941272(-)$1	1	128	167	11.3727
(((((((.....((.((.....)).))....))))))))	chr4:187524870-187525145(-)$1	1	36	75	15.5191
(((((..((..(((........)))..).)..)))))))	chr8:103663691-103663976(-)$1	1	28	67	12.2240
(((((((.((((.(((((...)))))))).).)))))))	chr22:50728433-50728673(-)$1	1	42	81	11.9028
((((((((((((..(((......)))..)))))))))))	chr5:73931095-73931331(-)$1	1	196	235	17.5420
(((((((.(((((((((.....))))))))).....)))	chr20:62679938-62680215(-)$1	1	111	150	12.4593
(((((((..((..(((......)))..))...)))))))	chr16:68055664-68055946(-)$1	1	180	219	12.5233
((((((((((..(((((.....)))).)..))))).)))	chr11:14666028-14666291(+)$1	1	189	228	12.2051
((((((..((.(((((((.....))).)))).)).))))	chr16:29818696-29819002(+)$1	1	235	274	11.7137
((((((.....(((.(((....)))..)))..)))))))	chr5:139060260-139060541(+)$1	1	178	217	14.0959
(((.((((.....((((....))))..)))).)))))))	chr17:25636100-25636328(+)$1	1	94	133	11.7215
(..(((..((...(((....)))))..)))..).)))))	chr14:23450805-23451027(-)$1	1	19	58	11.6232

#PSSM
= : 0.24	g : 0.13	c : 0.12	f : 0.10	e : 0.08	i : 0.08	" : 0.05	! : 0.03	d : 0.03	h : 0.03	# : 0.01	b : 0.01	[ : 0.01	a : 0.01	
= : 0.25	g : 0.13	c : 0.10	f : 0.10	e : 0.08	i : 0.08	d : 0.06	" : 0.03	! : 0.03	[ : 0.03	h : 0.03	# : 0.01	
= : 0.25	f : 0.10	g : 0.10	i : 0.08	[ : 0.06	e : 0.06	c : 0.06	# : 0.05	h : 0.05	! : 0.03	: : 0.03	b : 0.03	d : 0.03	
= : 0.25	f : 0.10	g : 0.10	i : 0.08	c : 0.08	e : 0.06	b : 0.05	d : 0.05	h : 0.05	# : 0.03	[ : 0.03	a : 0.01	! : 0.01	" : 0.01	$ : 0.01	
= : 0.25	f : 0.10	c : 0.10	g : 0.08	d : 0.08	[ : 0.06	i : 0.06	h : 0.05	a : 0.03	# : 0.03	" : 0.03	e : 0.03	b : 0.01	$ : 0.01	
= : 0.22	c : 0.10	! : 0.08	g : 0.08	f : 0.08	b : 0.06	i : 0.06	# : 0.05	d : 0.05	h : 0.05	e : 0.05	" : 0.03	$ : 0.01	[ : 0.01	
= : 0.22	! : 0.13	b : 0.08	g : 0.08	e : 0.06	f : 0.06	[ : 0.05	i : 0.05	c : 0.05	d : 0.05	h : 0.03	" : 0.03	$ : 0.03	# : 0.01	
= : 0.18	e : 0.12	[ : 0.10	! : 0.08	g : 0.06	f : 0.06	d : 0.05	" : 0.05	c : 0.05	$ : 0.05	# : 0.03	a : 0.03	b : 0.03	i : 0.03	h : 0.01	
= : 0.15	e : 0.12	b : 0.08	g : 0.08	c : 0.08	[ : 0.06	d : 0.05	# : 0.05	f : 0.05	" : 0.05	i : 0.05	$ : 0.05	! : 0.03	a : 0.03	h : 0.01	
c : 0.17	e : 0.15	= : 0.13	b : 0.10	g : 0.08	$ : 0.06	d : 0.05	f : 0.05	# : 0.05	[ : 0.03	" : 0.03	h : 0.01	! : 0.01	i : 0.01	
c : 0.20	e : 0.12	g : 0.08	= : 0.08	# : 0.08	[ : 0.06	" : 0.06	b : 0.06	$ : 0.06	d : 0.05	f : 0.03	! : 0.03	i : 0.01	
c : 0.18	# : 0.12	e : 0.10	b : 0.10	" : 0.08	! : 0.08	g : 0.06	d : 0.05	= : 0.05	$ : 0.05	f : 0.03	[ : 0.03	i : 0.01	
[ : 0.15	! : 0.12	" : 0.12	b : 0.10	# : 0.10	c : 0.08	g : 0.06	e : 0.05	a : 0.05	= : 0.03	d : 0.03	$ : 0.03	f : 0.01	i : 0.01	
[ : 0.18	d : 0.17	c : 0.17	b : 0.08	# : 0.08	! : 0.06	g : 0.05	" : 0.05	e : 0.05	= : 0.01	$ : 0.01	f : 0.01	i : 0.01	
c : 0.39	d : 0.20	b : 0.08	# : 0.05	[ : 0.05	! : 0.03	" : 0.03	r : 0.01	g : 0.01	= : 0.01	a : 0.01	f : 0.01	q : 0.01	e : 0.01	i : 0.01	
c : 0.48	d : 0.20	b : 0.12	[ : 0.05	! : 0.03	r : 0.01	= : 0.01	f : 0.01	q : 0.01	e : 0.01	i : 0.01	
c : 0.36	d : 0.18	b : 0.12	o : 0.08	a : 0.05	[ : 0.03	r : 0.01	! : 0.01	= : 0.01	n : 0.01	f : 0.01	q : 0.01	e : 0.01	i : 0.01	m : 0.01	
n : 0.43	o : 0.15	c : 0.10	b : 0.06	d : 0.05	m : 0.05	r : 0.01	[ : 0.01	l : 0.01	a : 0.01	= : 0.01	f : 0.01	q : 0.01	e : 0.01	
n : 0.48	o : 0.15	m : 0.13	l : 0.08	b : 0.05	r : 0.01	d : 0.01	c : 0.01	f : 0.01	q : 0.01	
n : 0.49	o : 0.15	l : 0.15	m : 0.13	r : 0.01	b : 0.01	q : 0.01	
n : 0.49	l : 0.15	o : 0.15	m : 0.12	r : 0.01	a : 0.01	q : 0.01	c : 0.01	
n : 0.48	o : 0.15	m : 0.08	l : 0.08	d : 0.05	c : 0.03	r : 0.01	2 : 0.01	b : 0.01	a : 0.01	q : 0.01	e : 0.01	
c : 0.39	d : 0.18	b : 0.13	n : 0.06	o : 0.06	r : 0.01	l : 0.01	2 : 0.01	= : 0.01	] : 0.01	f : 0.01	e : 0.01	i : 0.01	
c : 0.44	d : 0.18	b : 0.17	a : 0.05	g : 0.03	n : 0.01	= : 0.01	] : 0.01	f : 0.01	e : 0.01	i : 0.01	
c : 0.43	d : 0.18	] : 0.10	b : 0.08	g : 0.03	4 : 0.03	3 : 0.03	= : 0.01	2 : 0.01	f : 0.01	e : 0.01	i : 0.01	
4 : 0.15	2 : 0.13	d : 0.13	3 : 0.12	c : 0.10	] : 0.08	b : 0.08	g : 0.03	e : 0.03	f : 0.03	a : 0.03	= : 0.01	i : 0.01	
4 : 0.18	2 : 0.15	] : 0.15	3 : 0.13	b : 0.10	c : 0.08	= : 0.05	e : 0.03	g : 0.03	f : 0.03	i : 0.01	
4 : 0.22	c : 0.20	3 : 0.10	b : 0.08	e : 0.06	= : 0.06	g : 0.05	f : 0.05	d : 0.05	2 : 0.03	a : 0.03	i : 0.01	
c : 0.20	4 : 0.20	e : 0.08	g : 0.08	b : 0.08	= : 0.08	d : 0.06	] : 0.05	3 : 0.05	f : 0.03	i : 0.01	2 : 0.01	
c : 0.17	= : 0.13	e : 0.12	b : 0.10	g : 0.08	d : 0.08	4 : 0.08	f : 0.05	3 : 0.05	2 : 0.03	i : 0.03	a : 0.01	] : 0.01	
2 : 0.17	= : 0.13	e : 0.12	d : 0.10	b : 0.08	4 : 0.06	f : 0.05	] : 0.05	3 : 0.05	g : 0.05	c : 0.05	i : 0.03	a : 0.01	
2 : 0.18	= : 0.15	] : 0.10	e : 0.10	b : 0.08	c : 0.08	d : 0.05	f : 0.05	4 : 0.05	g : 0.05	h : 0.01	i : 0.01	5 : 0.01	3 : 0.01	
= : 0.20	c : 0.12	b : 0.08	e : 0.08	f : 0.08	g : 0.06	d : 0.05	i : 0.05	2 : 0.05	a : 0.03	] : 0.03	4 : 0.03	h : 0.03	3 : 0.01	> : 0.01	5 : 0.01	
= : 0.20	c : 0.17	g : 0.08	] : 0.06	f : 0.06	e : 0.06	b : 0.05	3 : 0.05	i : 0.05	4 : 0.05	d : 0.03	h : 0.03	> : 0.01	2 : 0.01	5 : 0.01	
= : 0.22	c : 0.10	] : 0.10	g : 0.08	f : 0.08	3 : 0.06	e : 0.05	d : 0.05	4 : 0.05	i : 0.05	b : 0.03	h : 0.03	a : 0.01	> : 0.01	5 : 0.01	
= : 0.22	] : 0.10	c : 0.10	f : 0.10	g : 0.08	d : 0.06	e : 0.05	3 : 0.05	i : 0.05	b : 0.03	4 : 0.03	h : 0.03	6 : 0.01	> : 0.01	5 : 0.01	
= : 0.24	g : 0.10	c : 0.10	f : 0.10	e : 0.08	d : 0.06	i : 0.06	] : 0.03	4 : 0.03	b : 0.03	h : 0.03	6 : 0.03	3 : 0.01	: : 0.01	> : 0.01	
= : 0.25	c : 0.13	g : 0.10	f : 0.10	e : 0.06	d : 0.06	i : 0.06	h : 0.03	6 : 0.03	4 : 0.01	a : 0.01	2 : 0.01	] : 0.01	: : 0.01	> : 0.01	b : 0.01	
= : 0.25	g : 0.13	c : 0.08	f : 0.08	e : 0.06	i : 0.05	2 : 0.05	h : 0.05	d : 0.03	] : 0.03	6 : 0.03	: : 0.03	3 : 0.01	a : 0.01	[ : 0.01	> : 0.01	

#score	783.3659724780672
#seq	58
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_transcript_m1_run2.txt

#BEAR
%ccctttttttttttcccfff	chr1:220152740-220153016(-)$1	276	218	239	17.7657
dddwwwwwwwwwwwwwwdddd	chrM:13255-13466(+)$1	211	119	140	20.2636
fffvvvvvvvvvvvvvfffff	chr12:46357788-46358061(-)$1	273	49	70	19.1980
[cccxxxxxxxxxxxxxxxcc	chr10:18854183-18854481(-)$1	298	137	158	18.2881
fyyyyyyyyyyyyyyyyffff	chr11:62291603-62291812(-)$1	209	122	143	20.0709
yyyyyyyyyyyyyyyydddd]	chr12:6692404-6692644(-)$1	240	129	150	19.4661
dddduuuuuuuuuuuudddd2	chr5:134263344-134263581(+)$1	237	145	166	20.5120
ffffxxxxxxxxxxxxxxxff	chr7:27832583-27832810(+)$1	227	97	118	17.6681
ffwwwwwwwwwwwwwwfffff	chr8:91383047-91383334(+)$1	287	95	116	19.6145
[bbvvvvvvvvvvvvvbb]bb	chr16:8997030-8997358(-)$1	328	82	103	18.3234
iiiixxxxxxxxxxxxxxxii	chr6:147618935-147619258(+)$1	323	265	286	17.8814
"ddddtttttttttttdddd2	chr12:6690356-6690607(-)$1	251	175	196	17.6495
cc[a^^^^^^^^^^^^^^^^^	chr8:53569110-53569406(-)$1	296	125	146	16.3217
hhhvvvvvvvvvvvvvhhhhh	chr17:65900716-65900974(+)$1	258	88	109	17.3818
ffffxxxxxxxxxxxxxxxff	chr8:91384981-91385265(+)$1	284	231	252	17.6681
[ccc^^^^^^^^^^^^^^^^^	chrM:10479-10691(+)$1	212	48	69	16.3895
cc[awwwwwwwwwwwwwwa]c	chr12:21789969-21790229(-)$1	260	23	44	20.7259
ccyyyyyyyyyyyyyyyyccc	chr5:79946944-79947198(-)$1	254	176	197	20.9370
ddddtttttttttttdddd33	chr11:62288213-62288448(-)$1	235	97	118	18.1163
eeee^^^^^^^^^^^^^^^^^	chrM:13266-13496(+)$1	230	149	170	16.2040
ggggxxxxxxxxxxxxxxxgg	chr4:769614-769913(-)$1	299	36	57	17.8410
eeeettttttttttteeeee]	chr17:34171000-34171235(+)$1	235	64	85	18.4046
eeee^^^^^^^^^^^^^^^^^	chrM:9790-10002(+)$1	212	46	67	16.2040
====vvvvvvvvvvvvv====	chr14:61278600-61278930(+)$1	330	211	232	19.7010
eeeeettttttttttteeeee	chr4:770808-771123(-)$1	315	149	170	18.2157
eeeeuuuuuuuuuuuueeeee	chr10:105762224-105762495(+)$1	271	17	38	20.9607
ccccuuuuuuuuuuuuccc]c	chr2:190339931-190340257(+)$1	326	293	314	21.2597
eeeeuuuuuuuuuuuueeeee	chr1:171526286-171526511(+)$1	225	177	198	20.9607
cccxxxxxxxxxxxxxxxccc	chr8:91284520-91284806(+)$1	286	116	137	18.3720
ddddxxxxxxxxxxxxxxxdd	chr3:6618194-6618466(+)$1	272	177	198	17.7534
ffwwwwwwwwwwwwwwfffff	chr4:68358489-68358789(-)$1	300	231	252	19.6145
dddduuuuuuuuuuuudddd4	chr3:196642711-196643025(+)$1	314	99	120	20.7497
dddduuuuuuuuuuuudddd:	chrM:12784-12987(+)$1	203	178	199	19.7020
eeeeuuuuuuuuuuuueeeee	chr11:62293662-62293889(-)$1	227	83	104	20.9607
ddddyyyyyyyyyyyyyyyyd	chr18:39561221-39561546(+)$1	325	279	300	20.2361
dddvvvvvvvvvvvvvdddd3	chr11:65267373-65267586(+)$1	213	34	55	19.7005
c[ccctttttttttttccc]c	chr3:180665551-180665818(+)$1	267	71	92	18.5172
[ccctttttttttttccc]dd	chr5:33467644-33467905(+)$1	261	26	47	18.4921
eexxxxxxxxxxxxxxxeeee	chr7:119433319-119433575(-)$1	256	61	82	17.9910
cccxxxxxxxxxxxxxxxccc	chr8:91284458-91284720(+)$1	262	178	199	18.3720
eeeeuuuuuuuuuuuueeeee	chr7:91708343-91708627(+)$1	284	199	220	20.9607
cccvvvvvvvvvvvvvccc]d	chr8:91386277-91386581(+)$1	304	258	279	19.9634
fyyyyyyyyyyyyyyyyffff	chr11:2672724-2672996(-)$1	272	197	218	20.0709
#cccuuuuuuuuuuuuccc33	chr1:22033182-22033428(-)$1	246	14	35	21.3335
ffffuuuuuuuuuuuufffff	chr5:171368834-171369179(-)$1	345	234	255	20.2092
[ccctttttttttttccc]dd	chr6:35837484-35837745(-)$1	261	83	104	18.4921
eeee^^^^^^^^^^^^^^^^^	chr11:62294319-62294593(-)$1	274	174	195	16.2040
dddduuuuuuuuuuuudddd3	chrM:12513-12766(+)$1	253	226	247	20.7796
^^^^^^^^^^^^^^^^ccc33	chr10:18854605-18854859(-)$1	254	166	187	15.5137
ffffuuuuuuuuuuuufffff	chr4:770490-770805(-)$1	315	60	81	20.2092
ffffuuuuuuuuuuuufffff	chr1:39800589-39800871(+)$1	282	250	271	20.2092
eeeeuuuuuuuuuuuueeeee	chr4:68383826-68384144(-)$1	318	167	188	20.9607
d[bbtttttttttttbbdddd	chr4:13605609-13605939(-)$1	330	146	167	17.2476
hh^^^^^^^^^^^^^^^^^^^	chr8:101725257-101725496(-)$1	239	43	64	15.9584
eeee^^^^^^^^^^^^^^^^^	chrM:9856-10085(+)$1	229	13	34	16.2040
====^^^^^^^^^^^^^^^^^	chr7:91631594-91631847(+)$1	253	159	180	16.1811
=====ttttttttttt=====	chr7:119438012-119438304(-)$1	292	92	113	17.6911
cccwwwwwwwwwwwwwwccc]	chr15:20625771-20626062(-)$1	291	95	116	20.8498

#otherMatches

#Seq PSSM
AUGGGUUUAGUAUUACCACCC	chr1:220152740-220153016(-)$1	276	218	239	17.7657
CAUCCACAACCUUAACAAUGA	chrM:13255-13466(+)$1	211	119	140	20.2636
GAAGGCAAACAUAAAAUUCUC	chr12:46357788-46358061(-)$1	273	49	70	19.1980
guauggaauggaauggagaau	chr10:18854183-18854481(-)$1	298	137	158	18.2881
GAUCCAAGUUUAAAAUGCCUU	chr11:62291603-62291812(-)$1	209	122	143	20.0709
UAAACAGGAAGAAAGUGUGGA	chr12:6692404-6692644(-)$1	240	129	150	19.4661
UGCCAUGAUUGUGAGGGGCAG	chr5:134263344-134263581(+)$1	237	145	166	20.5120
CUAGGACAAGACUGAUACACU	chr7:27832583-27832810(+)$1	227	97	118	17.6681
aacuauuccuucuaccuucac	chr8:91383047-91383334(+)$1	287	95	116	19.6145
UUCAUACAUAUUUUCAGAUAG	chr16:8997030-8997358(-)$1	328	82	103	18.3234
ugaaugaaaaaagaaaaacuu	chr6:147618935-147619258(+)$1	323	265	286	17.8814
CAUACUAAAGACAAAUGUGUA	chr12:6690356-6690607(-)$1	251	175	196	17.6495
CCAGGAAAAAGAAAAACAGUU	chr8:53569110-53569406(-)$1	296	125	146	16.3217
UCAUUUACACCAGGUUUGGAA	chr17:65900716-65900974(+)$1	258	88	109	17.3818
gaagcaaaaauuauagcaacu	chr8:91384981-91385265(+)$1	284	231	252	17.6681
CUAGUAUAUCGCUCACACCUC	chrM:10479-10691(+)$1	212	48	69	16.3895
gagcaguagucaaagucaggu	chr12:21789969-21790229(-)$1	260	23	44	20.7259
GGACAUUUAACUAAAACCCCU	chr5:79946944-79947198(-)$1	254	176	197	20.9370
AUUUCAAAAGCCCACAAAUCU	chr11:62288213-62288448(-)$1	235	97	118	18.1163
GAGGACUACUCAAAACCAUAC	chrM:13266-13496(+)$1	230	149	170	16.2040
GGUUUCUCUACUCCACAAUAA	chr4:769614-769913(-)$1	299	36	57	17.8410
GGCCCCAUCCCCCUAGGCCGU	chr17:34171000-34171235(+)$1	235	64	85	18.4046
UGGCUCAACUUUCCUCACUAU	chrM:9790-10002(+)$1	212	46	67	16.2040
AAGGAAGAAUAAGCAGGCUUU	chr14:61278600-61278930(+)$1	330	211	232	19.7010
ugcuggaaauggaagacggca	chr4:770808-771123(-)$1	315	149	170	18.2157
ACAGAAGACCAAGAAACUGUG	chr10:105762224-105762495(+)$1	271	17	38	20.9607
UUCUGUUCUAAAAAUAAGAUA	chr2:190339931-190340257(+)$1	326	293	314	21.2597
GGAUCCAGCAAGCACAGUCUU	chr1:171526286-171526511(+)$1	225	177	198	20.9607
GAUGAAGGUGGAAGAGAGGUC	chr8:91284520-91284806(+)$1	286	116	137	18.3720
gaaggaacaaaguagaaaacu	chr3:6618194-6618466(+)$1	272	177	198	17.7534
UAGAUUUUAUUUUAAAUAGGA	chr4:68358489-68358789(-)$1	300	231	252	19.6145
ggacagauaaaaacaagucca	chr3:196642711-196643025(+)$1	314	99	120	20.7497
GCCUCACCCCACUACUAGGCC	chrM:12784-12987(+)$1	203	178	199	19.7020
UUCAAGAUGCCAGAGAUGAAU	chr11:62293662-62293889(-)$1	227	83	104	20.9607
UGCCAAGAAUUAAAUACAUAG	chr18:39561221-39561546(+)$1	325	279	300	20.2361
auagaagauagaaaaauauaa	chr11:65267373-65267586(+)$1	213	34	55	19.7005
AUGGAUAUAGGCAUUUUUUUU	chr3:180665551-180665818(+)$1	267	71	92	18.5172
GUGAAAAAGAGAAAAUCAGUG	chr5:33467644-33467905(+)$1	261	26	47	18.4921
gaaugaaaaaacaagacucau	chr7:119433319-119433575(-)$1	256	61	82	17.9910
GAUGAAGGUGGAAGAGAGGUC	chr8:91284458-91284720(+)$1	262	178	199	18.3720
AUUGGACAGAAGACAUCAAUG	chr7:91708343-91708627(+)$1	284	199	220	20.9607
aggaccauaaagcaaaccucg	chr8:91386277-91386581(+)$1	304	258	279	19.9634
agguaaagaacacaAUAUCCa	chr11:2672724-2672996(-)$1	272	197	218	20.0709
UGACUUUUUUUCAGCUGUUUU	chr1:22033182-22033428(-)$1	246	14	35	21.3335
aaaauccuuugugacuuuuuu	chr5:171368834-171369179(-)$1	345	234	255	20.2092
UGGCCAGGAUCAAACGCUUAU	chr6:35837484-35837745(-)$1	261	83	104	18.4921
GGGCCCCAAAGUUGAUGUAAA	chr11:62294319-62294593(-)$1	274	174	195	16.2040
AACAACCUAUUCCAACUGUUC	chrM:12513-12766(+)$1	253	226	247	20.7796
auggaaugaaauggagcgugg	chr10:18854605-18854859(-)$1	254	166	187	15.5137
ccucugcagugacaaugggga	chr4:770490-770805(-)$1	315	60	81	20.2092
UGCUAAAGAAUUUAUCAGUAU	chr1:39800589-39800871(+)$1	282	250	271	20.2092
UCUCAGAAUAGAAUACGAGAU	chr4:68383826-68384144(-)$1	318	167	188	20.9607
AAGUCUAAAUCAAAAACUCAA	chr4:13605609-13605939(-)$1	330	146	167	17.2476
AUGUUGUAUGGAAUAUCUUUG	chr8:101725257-101725496(-)$1	239	43	64	15.9584
CCAACUAAUAUUUCACUUUAC	chrM:9856-10085(+)$1	229	13	34	16.2040
AGAGAUUGAAAAGCAAAGGAA	chr7:91631594-91631847(+)$1	253	159	180	16.1811
aggugagcacucauaguaccu	chr7:119438012-119438304(-)$1	292	92	113	17.6911
cauacACAAAUUACAAAAUGG	chr15:20625771-20626062(-)$1	291	95	116	20.8498

#DB
.(((...........))))))	chr1:220152740-220153016(-)$1	1	218	239	17.7657
(((..............))))	chrM:13255-13466(+)$1	1	119	140	20.2636
(((.............)))))	chr12:46357788-46358061(-)$1	1	49	70	19.1980
.(((...............))	chr10:18854183-18854481(-)$1	1	137	158	18.2881
(................))))	chr11:62291603-62291812(-)$1	1	122	143	20.0709
................)))).	chr12:6692404-6692644(-)$1	1	129	150	19.4661
((((............)))).	chr5:134263344-134263581(+)$1	1	145	166	20.5120
((((...............))	chr7:27832583-27832810(+)$1	1	97	118	17.6681
((..............)))))	chr8:91383047-91383334(+)$1	1	95	116	19.6145
.((.............)).))	chr16:8997030-8997358(-)$1	1	82	103	18.3234
((((...............))	chr6:147618935-147619258(+)$1	1	265	286	17.8814
.((((...........)))).	chr12:6690356-6690607(-)$1	1	175	196	17.6495
((.(.................	chr8:53569110-53569406(-)$1	1	125	146	16.3217
(((.............)))))	chr17:65900716-65900974(+)$1	1	88	109	17.3818
((((...............))	chr8:91384981-91385265(+)$1	1	231	252	17.6681
.(((.................	chrM:10479-10691(+)$1	1	48	69	16.3895
((.(..............).)	chr12:21789969-21790229(-)$1	1	23	44	20.7259
((................)))	chr5:79946944-79947198(-)$1	1	176	197	20.9370
((((...........))))..	chr11:62288213-62288448(-)$1	1	97	118	18.1163
((((.................	chrM:13266-13496(+)$1	1	149	170	16.2040
((((...............))	chr4:769614-769913(-)$1	1	36	57	17.8410
((((...........))))).	chr17:34171000-34171235(+)$1	1	64	85	18.4046
((((.................	chrM:9790-10002(+)$1	1	46	67	16.2040
((((.............))))	chr14:61278600-61278930(+)$1	1	211	232	19.7010
(((((...........)))))	chr4:770808-771123(-)$1	1	149	170	18.2157
((((............)))))	chr10:105762224-105762495(+)$1	1	17	38	20.9607
((((............))).)	chr2:190339931-190340257(+)$1	1	293	314	21.2597
((((............)))))	chr1:171526286-171526511(+)$1	1	177	198	20.9607
(((...............)))	chr8:91284520-91284806(+)$1	1	116	137	18.3720
((((...............))	chr3:6618194-6618466(+)$1	1	177	198	17.7534
((..............)))))	chr4:68358489-68358789(-)$1	1	231	252	19.6145
((((............)))).	chr3:196642711-196643025(+)$1	1	99	120	20.7497
((((............)))).	chrM:12784-12987(+)$1	1	178	199	19.7020
((((............)))))	chr11:62293662-62293889(-)$1	1	83	104	20.9607
((((................)	chr18:39561221-39561546(+)$1	1	279	300	20.2361
(((.............)))).	chr11:65267373-65267586(+)$1	1	34	55	19.7005
(.(((...........))).)	chr3:180665551-180665818(+)$1	1	71	92	18.5172
.(((...........))).))	chr5:33467644-33467905(+)$1	1	26	47	18.4921
((...............))))	chr7:119433319-119433575(-)$1	1	61	82	17.9910
(((...............)))	chr8:91284458-91284720(+)$1	1	178	199	18.3720
((((............)))))	chr7:91708343-91708627(+)$1	1	199	220	20.9607
(((.............))).)	chr8:91386277-91386581(+)$1	1	258	279	19.9634
(................))))	chr11:2672724-2672996(-)$1	1	197	218	20.0709
.(((............)))..	chr1:22033182-22033428(-)$1	1	14	35	21.3335
((((............)))))	chr5:171368834-171369179(-)$1	1	234	255	20.2092
.(((...........))).))	chr6:35837484-35837745(-)$1	1	83	104	18.4921
((((.................	chr11:62294319-62294593(-)$1	1	174	195	16.2040
((((............)))).	chrM:12513-12766(+)$1	1	226	247	20.7796
................)))..	chr10:18854605-18854859(-)$1	1	166	187	15.5137
((((............)))))	chr4:770490-770805(-)$1	1	60	81	20.2092
((((............)))))	chr1:39800589-39800871(+)$1	1	250	271	20.2092
((((............)))))	chr4:68383826-68384144(-)$1	1	167	188	20.9607
(.((...........))))))	chr4:13605609-13605939(-)$1	1	146	167	17.2476
((...................	chr8:101725257-101725496(-)$1	1	43	64	15.9584
((((.................	chrM:9856-10085(+)$1	1	13	34	16.2040
((((.................	chr7:91631594-91631847(+)$1	1	159	180	16.1811
(((((...........)))))	chr7:119438012-119438304(-)$1	1	92	113	17.6911
(((..............))).	chr15:20625771-20626062(-)$1	1	95	116	20.8498

#PSSM
e : 0.20	d : 0.17	f : 0.17	c : 0.15	[ : 0.08	= : 0.05	h : 0.03	% : 0.01	y : 0.01	i : 0.01	" : 0.01	g : 0.01	# : 0.01	^ : 0.01	
c : 0.24	e : 0.20	d : 0.17	f : 0.13	y : 0.05	= : 0.05	h : 0.03	[ : 0.03	b : 0.01	i : 0.01	g : 0.01	^ : 0.01	
c : 0.20	e : 0.18	d : 0.17	f : 0.10	y : 0.06	= : 0.05	w : 0.03	b : 0.03	[ : 0.03	^ : 0.03	i : 0.01	h : 0.01	g : 0.01	x : 0.01	
e : 0.18	c : 0.13	d : 0.13	v : 0.08	f : 0.08	w : 0.06	y : 0.06	= : 0.05	x : 0.05	a : 0.03	^ : 0.03	i : 0.01	g : 0.01	b : 0.01	
u : 0.24	x : 0.15	^ : 0.15	t : 0.10	v : 0.10	w : 0.08	y : 0.08	d : 0.01	e : 0.01	c : 0.01	= : 0.01	
u : 0.24	t : 0.17	x : 0.15	^ : 0.15	v : 0.10	w : 0.08	y : 0.08	
u : 0.24	t : 0.17	x : 0.15	^ : 0.15	v : 0.10	w : 0.08	y : 0.08	
u : 0.24	t : 0.17	x : 0.15	^ : 0.15	v : 0.10	w : 0.08	y : 0.08	
u : 0.24	t : 0.17	x : 0.15	^ : 0.15	v : 0.10	w : 0.08	y : 0.08	
u : 0.24	t : 0.17	x : 0.15	^ : 0.15	v : 0.10	w : 0.08	y : 0.08	
u : 0.24	t : 0.17	x : 0.15	^ : 0.15	v : 0.10	w : 0.08	y : 0.08	
u : 0.24	t : 0.17	x : 0.15	^ : 0.15	v : 0.10	w : 0.08	y : 0.08	
u : 0.24	t : 0.17	x : 0.15	^ : 0.15	v : 0.10	w : 0.08	y : 0.08	
u : 0.24	t : 0.17	x : 0.15	^ : 0.15	v : 0.10	w : 0.08	y : 0.08	
u : 0.24	t : 0.17	x : 0.15	^ : 0.15	v : 0.10	w : 0.08	y : 0.08	
u : 0.24	x : 0.15	^ : 0.15	v : 0.10	w : 0.08	y : 0.08	t : 0.06	c : 0.05	d : 0.01	e : 0.01	b : 0.01	
x : 0.15	c : 0.13	d : 0.13	^ : 0.13	e : 0.12	f : 0.10	y : 0.06	w : 0.05	b : 0.03	h : 0.01	v : 0.01	= : 0.01	
d : 0.17	c : 0.15	f : 0.13	x : 0.13	^ : 0.13	e : 0.13	y : 0.03	= : 0.03	b : 0.01	h : 0.01	w : 0.01	
d : 0.17	f : 0.15	c : 0.15	^ : 0.13	e : 0.13	x : 0.10	] : 0.05	= : 0.03	h : 0.01	a : 0.01	y : 0.01	
d : 0.20	f : 0.18	^ : 0.13	e : 0.13	c : 0.08	] : 0.06	3 : 0.05	= : 0.03	b : 0.01	i : 0.01	h : 0.01	g : 0.01	y : 0.01	
f : 0.18	^ : 0.13	d : 0.12	c : 0.12	e : 0.12	3 : 0.08	] : 0.05	2 : 0.03	= : 0.03	b : 0.01	i : 0.01	h : 0.01	g : 0.01	4 : 0.01	: : 0.01	

#score	1093.494797639285
#seq	58
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_UTR_m1_run1.txt

#BEAR
hh"""bb[accc####ddddllldddd333ccc]a]bb22	chr1:2122104-2122376(-)$1	272	73	113	11.7787
c===========!!eeeeellleeeee4444=========	chr16:28875588-28875828(+)$1	240	127	167	14.1996
[bb[bb[dddd[ccc!!bboooooobb22ccc]ddddbb]	chr10:105153956-105154183(-)$1	227	73	113	12.2976
b!!dddd[bb!!dddd[bboooooobbdddd22bb]dddd	chr3:48470635-48470946(-)$1	311	174	214	10.2684
ggggggggggggg!!bbrrrrrrrrrbb22gggggggFFF	chr22:46509341-46509591(+)$1	250	186	226	9.6471
]ccc333============]ggggggg333bb]ccc22==	chr17:28444058-28444277(+)$1	219	96	136	10.4555
fff####iiiiiiiii[ddddmmmmdddd]iiiiiiiii3	chr17:57918275-57918483(+)$1	208	138	178	12.0076
=[eeeee"""ccc[bboooooobb]ccc22eeeee22===	chr3:49058606-49058817(-)$1	211	115	155	10.7388
======[ccc[a!!bb!!ammmma22bba]ccc=======	chr9:101558650-101558912(-)$1	262	178	218	13.2844
===========%%%%%%ddddllldddd22==========	chr22:20067762-20068006(+)$1	244	131	171	11.6836
fffffccc!!bb[dddd[bboooooobb]ddddbb]ccc2	chr1:90308863-90309141(+)$1	278	95	135	10.2247
eeeee[ccc####a[ddddnnnnndddd]accceeeee]d	chr3:49050843-49051138(+)$1	295	200	240	11.7856
FFdddd[===========oooooo===========]dddd	chr2:61405213-61405439(+)$1	226	5	45	13.0439
ccc"""ffffff[bb"""bbnnnnnbb333bb]ffffff3	chr17:28443848-28444132(+)$1	284	12	52	12.0321
]a::ccc!!a[gggggggaooooooa]ggggggga22ccc	chr19:41770840-41771087(+)$1	247	35	75	11.3374
==========eeeee!!bboooooobb]eeeee:dddd[d	chr16:2580589-2580922(+)$1	333	122	162	12.3077
ggg!!eeeeeffffff[cccooooooccc]ffffff]eee	chr8:144679146-144679390(-)$1	244	94	134	11.0121
gggggggccc[ccc[cccccclllccc22ccc]cccccc]	chr2:54197724-54198040(-)$1	316	149	189	12.8689
[bbeeeee[ccc####cccooooooccc22ccc]eeeee]	chr7:150037619-150037883(-)$1	264	72	112	13.3485
oocccffffff[a[bb[cccnnnnnccc]bb]a333ffff	chr13:113863080-113863323(+)$1	243	168	208	10.4858
g[eeeee[eeeee!!ddddnnnnndddd]eeeee]eeeee	chr11:61582539-61582782(-)$1	243	88	128	10.7657
==========[ccccccqqqqqqqqccc22ccc=======	chr5:139063209-139063474(+)$1	265	50	90	12.0110
=====[ccc[dddd[a[ddddmmmmdddda]dddd22ccc	chr4:1303118-1303357(+)$1	239	82	122	10.5962
!!bbiiiiiiiii[cccbbnnnnnbb]ccc]iiiiiiiii	chr2:27435306-27435543(+)$1	237	60	100	13.8889
iiiiiiiii[a[bb[bbbbnnnnnbb]bb]bb333a]iii	chr20:62331308-62331613(-)$1	305	186	226	12.9904
ddd[ccc!!ffffff!!bbnnnnnbb22ffffff]ccc]d	chr3:49055820-49056130(-)$1	310	195	235	10.9004
!ccca"""bba[dddd!!bboooooobb22dddd]a]bb3	chr17:80197785-80198011(+)$1	226	134	174	11.9764
d!!==========ffffffmmmmffffff]==========	chr1:33283229-33283505(+)$1	276	97	137	11.8886
GGccc"""bb[eeeee[bbnnnnnbb22eeeee]bb333c	chr22:20073375-20073639(+)$1	264	217	257	10.3865
eccc[ccc[ccc!!eeeeennnnneeeee22ccc]ccccc	chr1:36789188-36789463(+)$1	275	137	177	12.5642
dddd[a[dddd"""ccc[ammmma]ccc22dddda]dddd	chr1:245026144-245026426(-)$1	282	44	84	10.8921
iiiiiiii[dddd!!cccooooooccc333ddddiiiiii	chr17:41622778-41623041(+)$1	263	20	60	15.0635
]ccc333============]ggggggg333bb]ccc22==	chr17:28444012-28444237(+)$1	225	142	182	10.4555
eeee[a[dddd[a[eeeeennnnneeeeea]dddd]a]ee	chr1:1284336-1284625(-)$1	289	94	134	11.0236
gg[ffffffdddd[bb[cccnnnnnccc]bb]dddd22ff	chr10:115933780-115934022(-)$1	242	98	138	10.2752
[bb[bb[dddd[ccc!!bboooooobb22ccc]ddddbb]	chr10:105153983-105154194(-)$1	211	84	124	12.2976
dddd"""eeeee"""ddddoooooodddd]eeeee333dd	chr9:97848104-97848317(+)$1	213	95	135	12.9606
ffccc[ccc!!a[eeeeeooooooeeeee]a22ccc]ccc	chr17:8108125-8108364(-)$1	239	184	224	12.5072
!!bb!!dddd[ccceeeeennnnneeeee333cccdddd2	chr10:60936916-60937195(+)$1	279	115	155	11.0052
!ccc!!a[ccc[dddd!!aooooooa22dddd]ccc]a55	chr7:77166718-77166983(+)$1	265	93	133	11.8322
=========ffffff!!ddddllldddd22ffffff4444	chr6:32938734-32939010(+)$1	276	193	233	12.5335
========bbbb!!bb[bbnnnnnbbbb22bb]bb22===	chr7:150777600-150777857(-)$1	257	33	73	14.2245
========iiiiiiiiiqqqqqqqqiiiiiiiii333===	chr17:74380818-74381068(+)$1	250	142	182	11.7513
gggggggggggg!!eeeeemmmmeeeee4444ggggggg:	chr17:57918004-57918238(+)$1	234	151	191	10.5382
f[bbccc"""bb[a[eeeeeooooooeeeeea]bb333cc	chr17:7477044-7477302(+)$1	258	41	81	11.7519
fff####iiiiiiiii[ddddmmmmdddd]iiiiiiiii3	chr17:57918283-57918525(+)$1	242	130	170	12.0076
ffffccc!!ccc####cccmmmmccc333ccc]ccc22ff	chr3:49050193-49050494(+)$1	301	103	143	12.2746
22============bb!!bbnnnnnbb22bbhhhhhhhh[	chr3:49058551-49058770(-)$1	219	153	193	11.3166
ccc####ccc####bbeeeeellleeeee]bbccc333cc	chr10:88516563-88516873(+)$1	310	85	125	12.2517
============$$$$$bbnnnnnbb55555=========	chr17:79988815-79989107(+)$1	292	63	103	11.9936
]ccc333============]ggggggg333bb]ccc22==	chr17:28444041-28444258(+)$1	217	113	153	10.4555
==========dddd[a[bbnnnnnbb]a]dddd:eeeeem	chr9:139743352-139743627(+)$1	275	138	178	11.8055
bdddd[ccc[bb[bb[bboooooobb]bb]bb]ccc]ddd	chr2:95825191-95825456(-)$1	265	92	132	10.9179
dd!!bb[ccc[bb[cccbbnnnnnbb]ccc]bb]cccbb2	chr2:242707714-242707989(+)$1	275	56	96	10.8572
dddd"""eeeee"""ddddoooooodddd]eeeee333dd	chr9:97848151-97848358(+)$1	207	48	88	12.9606
eeee[iiiiiiiiibb[bbmmmmbb]bb]iiiiiiiii]e	chr3:49058440-49058713(-)$1	273	94	134	11.4527
a[===========[a!!ddddllldddd333a]=======	chr2:101767639-101767902(-)$1	263	116	156	15.6645
hhhhhhhh[ccc"""ddddnnnnndddd333ccchhhhhh	chr17:79860502-79860766(-)$1	264	25	65	11.5998
ff####ccc[dddd[cccooooooccc]ddddccc22fff	chr4:38870017-38870259(+)$1	242	152	192	12.0781
[eeeee"""ccc[ccc[bboooooobbccc]ccc4444ee	chr3:49058685-49058903(-)$1	218	48	88	13.5854

#otherMatches

#Seq PSSM
GUGGACUGGUCUGAGGGCAGAGGCUGUAGGGGAGCGAGGG	chr1:2122104-2122376(-)$1	272	73	113	11.7787
UGUGUGAGCCGAGGUGGCCGCUGGCUGGAGAUUGGUUUGC	chr16:28875588-28875828(+)$1	240	127	167	14.1996
ACCUCGACCGGCUCGUCUGUGUUGCCAAUCGACUCGGCGU	chr10:105153956-105154183(-)$1	227	73	113	12.2976
UAACAGCUGCGGCUCCACCAGACCCGGGGAGAGGCCGCUG	chr3:48470635-48470946(-)$1	311	174	214	10.2684
GGGCGGCGGGCCCUCCCGCAGUGCAAGGCCGGGCCUGGCG	chr22:46509341-46509591(+)$1	250	186	226	9.6471
GUCUGAGGCCCCUCAGUCUUGCUUCCUAACCCGCGCUUGA	chr17:28444058-28444277(+)$1	219	96	136	10.4555
UUUGCUUGGGAGGAAAAUAAACAAUUUUACUUUUUUCCUU	chr17:57918275-57918483(+)$1	208	138	178	12.0076
UCGUGGCCUCAGGGGAACAUUGUCGCUUUCGCUACCCGCG	chr3:49058606-49058817(-)$1	211	115	155	10.7388
CUGCGCGCGUGUGACCAGGGCGACAcggagacggcgcggc	chr9:101558650-101558912(-)$1	262	178	218	13.2844
GCGGGCGCCUCAGGUAGGUgcggggcgcgaggggcgcccg	chr22:20067762-20068006(+)$1	244	131	171	11.6836
UGGCUGGCAGCGAGGCCACCAGCAGGGGGGGCCCGGGCCG	chr1:90308863-90309141(+)$1	278	95	135	10.2247
GUGAUUCUCCGGGAGGGUCUGCAUGGCCGUGAGAUCACUU	chr3:49050843-49051138(+)$1	295	200	240	11.7856
CCCCUUCCUUUACGCGCCUCACCUGGCGCGUGGGGAGAGG	chr2:61405213-61405439(+)$1	226	5	45	13.0439
GAUGGCGAUUCCGGGCAGGCAGUGAGUGAUCCGGGAGUUA	chr17:28443848-28444132(+)$1	284	12	52	12.0321
GGAUCCUGACACUCAGUGCAGGGGGGACACUGGGGGAGGG	chr19:41770840-41771087(+)$1	247	35	75	11.3374
AAGGGAACAGCCAGGGAAGAACCACCUGCCUGGGCAGGGC	chr16:2580589-2580922(+)$1	333	122	162	12.3077
CGGGACGGGGGCGCCGGGAGCACUGUCUCACGGCGCAUCC	chr8:144679146-144679390(-)$1	244	94	134	11.0121
GAgcccccggagccgggcgggcgucccgagccgggcccgc	chr2:54197724-54198040(-)$1	316	149	189	12.8689
GCCCCCGCUCCCCACCCUCCCCCCAGAGCAGGGCGCGGGA	chr7:150037619-150037883(-)$1	264	72	112	13.3485
CUGCCUUUCACUGCGCUGACCCUUCGUCUGCCCCUUGUGA	chr13:113863080-113863323(+)$1	243	168	208	10.4858
GACGGCGAUUGGUCCGUAUGUGUGGUGCCAccggccgccg	chr11:61582539-61582782(-)$1	243	88	128	10.7657
GUCCUUUUUUUCUGGCCUUGCUAAUGGCAACAGAAGAAAG	chr5:139063209-139063474(+)$1	265	50	90	12.0110
CCGGAAGAGGAGGCGGUGCUUUCCGGGGCUGGCCUGGCUC	chr4:1303118-1303357(+)$1	239	82	122	10.5962
CAGGGUCGCUGGCCAGCCGUGCGUCGCGCUCGCCAGCGGC	chr2:27435306-27435543(+)$1	237	60	100	13.8889
CCGUGGCUGUCUCCGCCCCAUCGAGGAGGAGGCCCGUCAG	chr20:62331308-62331613(-)$1	305	186	226	12.9904
AGGCGGUCCGGUGUGGAUCAAGGAGACGCGCACCCGCCAC	chr3:49055820-49056130(-)$1	310	195	235	10.9004
AUGCCAUGUCCCUGCUCCUCUGCAAUGAAAAGCAAGCGAA	chr17:80197785-80198011(+)$1	226	134	174	11.9764
CGGCUUGGAGGGGGAUGGGGGCGCCUGUUGCUUCUCCAGG	chr1:33283229-33283505(+)$1	276	97	137	11.8886
CACCACCUCCCCUGCAAACGUCCAGUGGUGCAGAGGUAAU	chr22:20073375-20073639(+)$1	264	217	257	10.3865
cgggaggagggAGAGCCCGGCCCGCGGGCCGUCCGUCCCC	chr1:36789188-36789463(+)$1	275	137	177	12.5642
gcggggagcgcgggcccgcgggggaggggagcgccgccgc	chr1:245026144-245026426(-)$1	282	44	84	10.8921
GGGGUCCUCGGGUGACUCAGGGGCGGGGCAGCCCAGGACU	chr17:41622778-41623041(+)$1	263	20	60	15.0635
GUCUGAGGCCCCUCAGUCUUGCUUCCUAACCCGCGCUUGA	chr17:28444012-28444237(+)$1	225	142	182	10.4555
gggcgcaggcgggcgggcgggUAgcgccccgcguccgagc	chr1:1284336-1284625(-)$1	289	94	134	11.0236
AACGGCCGCUGAGUGAGGCGUCGGCUGUGUUUCUCACCGC	chr10:115933780-115934022(-)$1	242	98	138	10.2752
ACCUCGACCGGCUCGUCUGUGUUGCCAAUCGACUCGGCGU	chr10:105153983-105154194(-)$1	211	84	124	12.2976
UUGUAUUUGCAGUCCAGGCCUUCGCGUCUCCUGCGCCAGC	chr9:97848104-97848317(+)$1	213	95	135	12.9606
GUCAUUCACUCGGGUGCGUGUGUUUGUAUGUCUGUGUAUG	chr17:8108125-8108364(-)$1	239	184	224	12.5072
GAUCUUUGCCGCAGUCCGGAUUUCCUGGGUCUCUGGGCAC	chr10:60936916-60937195(+)$1	279	115	155	11.0052
ggcgggcgggcggcgggggggccAGCGACCGCAGCCGGGG	chr7:77166718-77166983(+)$1	265	93	133	11.8322
GCUUUUUCUGCUCUGAGCCGGACGCCGGAAUGGAGUUUGA	chr6:32938734-32939010(+)$1	276	193	233	12.5335
CCGGGCCCCGAGACCGACUGAGGGAGCGACCUGCGCAGGG	chr7:150777600-150777857(-)$1	257	33	73	14.2245
GGGCCACUUGUCGCUUGGGCGAGAGCAGGCGGCAGCUGGU	chr17:74380818-74381068(+)$1	250	142	182	11.7513
UGGGGAUUUCUUGGUUUGUGAAAACAGGAGAGGAGAAAUA	chr17:57918004-57918238(+)$1	234	151	191	10.5382
CACAUCCGGGCAACGCGAGGGGGGGGCUUCGGCUGGAGGG	chr17:7477044-7477302(+)$1	258	41	81	11.7519
UUUGCUUGGGAGGAAAAUAAACAAUUUUACUUUUUUCCUU	chr17:57918283-57918525(+)$1	242	130	170	12.0076
GCCCUGCGUGGUUAUGAGGAGCUCCUGUUGCUGGCAUCGG	chr3:49050193-49050494(+)$1	301	103	143	12.2746
GGUCUCCUGGGGCCGGUCGCAAUGGGUUUCCGGGGGUCCC	chr3:49058551-49058770(-)$1	219	153	193	11.3166
GCUGGAGGAUGCGUUCCCUGGGGUCCGGGUGAGUUGGGAG	chr10:88516563-88516873(+)$1	310	85	125	12.2517
CUUCUUCCCGGUCGACGCCACGUGGGAGCACACCGGGAAG	chr17:79988815-79989107(+)$1	292	63	103	11.9936
GUCUGAGGCCCCUCAGUCUUGCUUCCUAACCCGCGCUUGA	chr17:28444041-28444258(+)$1	217	113	153	10.4555
GUGGUCUUCGGACUACGUGCGGGACAGGAGGUCAGGGCUG	chr9:139743352-139743627(+)$1	275	138	178	11.8055
cgggcgggggcuggcgcgggguggcgggcggggCCUGGUC	chr2:95825191-95825456(-)$1	265	92	132	10.9179
CCGGGCAUGCGUGGGCAGCGGGGGGCAUGCGUGGGCAGCA	chr2:242707714-242707989(+)$1	275	56	96	10.8572
UUGUAUUUGCAGUCCAGGCCUUCGCGUCUCCUGCGCCAGC	chr9:97848151-97848358(+)$1	207	48	88	12.9606
UGGGUCUCCUGGGGCCGGUCGCAAUGGGUUUCCGGGGGUC	chr3:49058440-49058713(-)$1	273	94	134	11.4527
GGCUCGGCUCACAGCGACCGGCGGCCGGGGAGAUGUGAGC	chr2:101767639-101767902(-)$1	263	116	156	15.6645
GCGGGGUGAGCGGAGUAGGGGAGACCUGGGGCGCCAUCCC	chr17:79860502-79860766(-)$1	264	25	65	11.5998
GAGUAUUUCCAGGCACCUCAGACCAGGCGCCUGAACGUCA	chr4:38870017-38870259(+)$1	242	152	192	12.0781
AGUAGAAGCGCGUGGAGCAUCACCUUGUCCUCGUUCACUC	chr3:49058685-49058903(-)$1	218	48	88	13.5854

#DB
((...((.((((....((((...))))...))).).))..	chr1:2122104-2122376(-)$1	1	73	113	11.7787
)(((((((((((..(((((...)))))....)))))))))	chr16:28875588-28875828(+)$1	1	127	167	14.1996
.((.((.((((.(((..((......))..))).)))))).	chr10:105153956-105154183(-)$1	1	73	113	12.2976
(..((((.((..((((.((......))))))..)).))))	chr3:48470635-48470946(-)$1	1	174	214	10.2684
))))))(((((((..((.........))..))))))))))	chr22:46509341-46509591(+)$1	1	186	226	9.6471
.)))...)))))))))))).)))))))...)).)))..))	chr17:28444058-28444277(+)$1	1	96	136	10.4555
(((....(((((((((.((((....)))).))))))))).	chr17:57918275-57918483(+)$1	1	138	178	12.0076
(.(((((...(((.((......)).)))..)))))..)))	chr3:49058606-49058817(-)$1	1	115	155	10.7388
((((((.(((.(..((..(....)..))).))))))))))	chr9:101558650-101558912(-)$1	1	178	218	13.2844
(((((((((((......((((...))))..))))))))))	chr22:20067762-20068006(+)$1	1	131	171	11.6836
((((((((..((.((((.((......)).)))))).))).	chr1:90308863-90309141(+)$1	1	95	135	10.2247
(((((.(((....(.((((.....)))).))))))))).)	chr3:49050843-49051138(+)$1	1	200	240	11.7856
((((((.(((((((((((......))))))))))).))))	chr2:61405213-61405439(+)$1	1	5	45	13.0439
(((...((((((.((...((.....))...)).)))))).	chr17:28443848-28444132(+)$1	1	12	52	12.0321
.)..(((..(.((((((((......).))))))))..)))	chr19:41770840-41771087(+)$1	1	35	75	11.3374
))))))))))(((((..((......)).))))).((((.(	chr16:2580589-2580922(+)$1	1	122	162	12.3077
(((..(((((((((((.(((......))).)))))).)))	chr8:144679146-144679390(-)$1	1	94	134	11.0121
((((((((((.(((.((((((...)))..))).)))))).	chr2:54197724-54198040(-)$1	1	149	189	12.8689
.(((((((.(((....(((......)))..))).))))).	chr7:150037619-150037883(-)$1	1	72	112	13.3485
..)))((((((.(.((.(((.....))).)).)...))))	chr13:113863080-113863323(+)$1	1	168	208	10.4858
(.(((((.(((((..((((.....)))).))))).)))))	chr11:61582539-61582782(-)$1	1	88	128	10.7657
((((((((((.((((((........)))..))))))))))	chr5:139063209-139063474(+)$1	1	50	90	12.0110
(((((.(((.((((.(.((((....))))).))))..)))	chr4:1303118-1303357(+)$1	1	82	122	10.5962
..(((((((((((.(((((.....)).))).)))))))))	chr2:27435306-27435543(+)$1	1	60	100	13.8889
(((((((((.(.((.((((.....)).)).))...).)))	chr20:62331308-62331613(-)$1	1	186	226	12.9904
(((.(((..((((((..((.....))..)))))).))).)	chr3:49055820-49056130(-)$1	1	195	235	10.9004
.((((...(((.((((..((......))..)))).).)).	chr17:80197785-80198011(+)$1	1	134	174	11.9764
(..((((((((((((((((....)))))).))))))))))	chr1:33283229-33283505(+)$1	1	97	137	11.8886
))(((...((.(((((.((.....))..))))).))...)	chr22:20073375-20073639(+)$1	1	217	257	10.3865
)(((.(((.(((..(((((.....)))))..))).)))))	chr1:36789188-36789463(+)$1	1	137	177	12.5642
((((.(.((((...(((.(....).)))..))))).))))	chr1:245026144-245026426(-)$1	1	44	84	10.8921
((((((((.((((..(((......)))...))))))))))	chr17:41622778-41623041(+)$1	1	20	60	15.0635
.)))...)))))))))))).)))))))...)).)))..))	chr17:28444012-28444237(+)$1	1	142	182	10.4555
((((.(.((((.(.(((((.....)))))).)))).).))	chr1:1284336-1284625(-)$1	1	94	134	11.0236
((.((((((((((.((.(((.....))).)).))))..))	chr10:115933780-115934022(-)$1	1	98	138	10.2752
.((.((.((((.(((..((......))..))).)))))).	chr10:105153983-105154194(-)$1	1	84	124	12.2976
((((...(((((...((((......)))).)))))...))	chr9:97848104-97848317(+)$1	1	95	135	12.9606
(((((.(((..(.(((((......))))).)..))).)))	chr17:8108125-8108364(-)$1	1	184	224	12.5072
..((..((((.((((((((.....)))))...))))))).	chr10:60936916-60937195(+)$1	1	115	155	11.0052
.(((..(.(((.((((..(......)..)))).))).)..	chr7:77166718-77166983(+)$1	1	93	133	11.8322
(((((((((((((((..((((...))))..))))))....	chr6:32938734-32939010(+)$1	1	193	233	12.5335
((((((((((((..((.((.....))))..)).))..)))	chr7:150777600-150777857(-)$1	1	33	73	14.2245
(((((((((((((((((........)))))))))...)))	chr17:74380818-74381068(+)$1	1	142	182	11.7513
)))))(((((((..(((((....)))))....))))))).	chr17:57918004-57918238(+)$1	1	151	191	10.5382
(.(((((...((.(.(((((......)))))).))...))	chr17:7477044-7477302(+)$1	1	41	81	11.7519
(((....(((((((((.((((....)))).))))))))).	chr17:57918283-57918525(+)$1	1	130	170	12.0076
(((((((..(((....(((....)))...))).)))..))	chr3:49050193-49050494(+)$1	1	103	143	12.2746
..))))))))))))((..((.....))..))((((((((.	chr3:49058551-49058770(-)$1	1	153	193	11.3166
(((....(((....(((((((...))))).)))))...))	chr10:88516563-88516873(+)$1	1	85	125	12.2517
((((((((((((.....((.....)).....)))))))))	chr17:79988815-79989107(+)$1	1	63	103	11.9936
.)))...)))))))))))).)))))))...)).)))..))	chr17:28444041-28444258(+)$1	1	113	153	10.4555
))))))))))((((.(.((.....)).).)))).(((((.	chr9:139743352-139743627(+)$1	1	138	178	11.8055
)((((.(((.((.((.((......)).)).)).))).)))	chr2:95825191-95825456(-)$1	1	92	132	10.9179
((..((.(((.((.(((((.....)).))).)).))))).	chr2:242707714-242707989(+)$1	1	56	96	10.8572
((((...(((((...((((......)))).)))))...))	chr9:97848151-97848358(+)$1	1	48	88	12.9606
((((.(((((((((((.((....)).)).))))))))).)	chr3:49058440-49058713(-)$1	1	94	134	11.4527
(.(((((((((((.(..((((...))))...).)))))))	chr2:101767639-101767902(-)$1	1	116	156	15.6645
((((((((.(((...((((.....))))...)))))))))	chr17:79860502-79860766(-)$1	1	25	65	11.5998
((....(((.((((.(((......))).)))))))..)))	chr4:38870017-38870259(+)$1	1	152	192	12.0781
.(((((...(((.(((.((......))))).)))....))	chr3:49058685-49058903(-)$1	1	48	88	13.5854

#PSSM
= : 0.18	f : 0.11	g : 0.09	d : 0.09	[ : 0.06	] : 0.06	e : 0.06	! : 0.06	c : 0.05	h : 0.03	b : 0.03	i : 0.03	F : 0.01	o : 0.01	G : 0.01	2 : 0.01	a : 0.01	
= : 0.18	c : 0.13	f : 0.09	d : 0.09	g : 0.08	! : 0.06	[ : 0.06	e : 0.06	b : 0.05	h : 0.03	i : 0.03	F : 0.01	a : 0.01	o : 0.01	G : 0.01	2 : 0.01	
= : 0.21	c : 0.18	b : 0.09	e : 0.09	d : 0.09	g : 0.06	f : 0.06	! : 0.05	i : 0.03	" : 0.01	: : 0.01	[ : 0.01	h : 0.01	# : 0.01	
= : 0.23	c : 0.15	e : 0.11	d : 0.09	# : 0.06	[ : 0.05	g : 0.05	f : 0.05	b : 0.05	" : 0.03	! : 0.03	i : 0.03	: : 0.01	h : 0.01	
= : 0.23	c : 0.11	e : 0.08	" : 0.06	# : 0.06	[ : 0.06	b : 0.05	d : 0.05	g : 0.05	3 : 0.05	! : 0.05	i : 0.05	f : 0.03	a : 0.01	h : 0.01	
= : 0.21	c : 0.09	e : 0.08	" : 0.08	b : 0.06	# : 0.06	[ : 0.06	i : 0.06	g : 0.05	3 : 0.05	d : 0.03	f : 0.03	a : 0.03	! : 0.03	h : 0.01	
= : 0.19	c : 0.18	[ : 0.11	" : 0.08	e : 0.06	i : 0.06	g : 0.05	3 : 0.05	# : 0.05	f : 0.05	d : 0.03	b : 0.01	a : 0.01	h : 0.01	
= : 0.26	c : 0.18	i : 0.09	d : 0.08	" : 0.08	[ : 0.06	e : 0.06	f : 0.05	! : 0.05	g : 0.03	h : 0.01	
= : 0.23	c : 0.16	i : 0.09	d : 0.08	b : 0.06	! : 0.06	e : 0.06	[ : 0.06	" : 0.05	f : 0.05	g : 0.03	a : 0.01	
= : 0.21	c : 0.18	d : 0.11	i : 0.08	b : 0.06	f : 0.06	e : 0.06	[ : 0.06	g : 0.03	" : 0.03	! : 0.03	# : 0.01	a : 0.01	
= : 0.16	d : 0.15	c : 0.13	[ : 0.11	i : 0.08	f : 0.08	b : 0.06	e : 0.06	! : 0.03	g : 0.03	# : 0.03	a : 0.03	
c : 0.16	= : 0.15	[ : 0.11	i : 0.08	b : 0.08	e : 0.08	d : 0.08	f : 0.06	g : 0.05	a : 0.03	# : 0.03	! : 0.01	% : 0.01	" : 0.01	
d : 0.13	= : 0.11	c : 0.09	[ : 0.09	# : 0.08	! : 0.08	i : 0.08	" : 0.06	e : 0.05	f : 0.05	g : 0.03	a : 0.03	b : 0.03	% : 0.01	$ : 0.01	
! : 0.13	d : 0.11	[ : 0.11	c : 0.09	= : 0.08	# : 0.06	i : 0.06	f : 0.06	" : 0.06	b : 0.05	e : 0.05	a : 0.03	% : 0.01	g : 0.01	$ : 0.01	
b : 0.16	e : 0.13	c : 0.11	[ : 0.11	d : 0.06	= : 0.06	f : 0.06	# : 0.05	! : 0.05	i : 0.05	" : 0.05	% : 0.01	g : 0.01	$ : 0.01	a : 0.01	
b : 0.16	d : 0.15	e : 0.13	c : 0.13	! : 0.09	= : 0.06	# : 0.05	i : 0.05	f : 0.03	a : 0.03	% : 0.01	" : 0.01	g : 0.01	$ : 0.01	[ : 0.01	
[ : 0.19	! : 0.16	c : 0.15	e : 0.13	d : 0.11	= : 0.06	b : 0.05	o : 0.01	% : 0.01	" : 0.01	g : 0.01	f : 0.01	i : 0.01	$ : 0.01	
b : 0.24	d : 0.19	e : 0.13	c : 0.13	= : 0.06	! : 0.06	[ : 0.03	q : 0.03	r : 0.01	o : 0.01	" : 0.01	g : 0.01	f : 0.01	
b : 0.30	d : 0.19	e : 0.11	o : 0.09	c : 0.09	a : 0.06	= : 0.05	q : 0.03	r : 0.01	f : 0.01	
o : 0.26	n : 0.23	d : 0.11	m : 0.09	b : 0.06	c : 0.06	] : 0.05	q : 0.03	e : 0.03	l : 0.01	r : 0.01	
o : 0.33	n : 0.30	d : 0.09	m : 0.09	g : 0.05	l : 0.03	q : 0.03	r : 0.01	c : 0.01	e : 0.01	
o : 0.33	n : 0.30	m : 0.15	l : 0.11	g : 0.05	q : 0.03	r : 0.01	
o : 0.31	n : 0.30	m : 0.15	l : 0.09	g : 0.05	q : 0.03	e : 0.01	r : 0.01	b : 0.01	
o : 0.31	n : 0.30	l : 0.08	g : 0.05	m : 0.05	e : 0.03	b : 0.03	a : 0.03	q : 0.03	d : 0.01	r : 0.01	f : 0.01	c : 0.01	
o : 0.23	b : 0.16	d : 0.11	e : 0.11	n : 0.06	c : 0.06	g : 0.05	m : 0.05	] : 0.03	q : 0.03	r : 0.01	2 : 0.01	= : 0.01	f : 0.01	
b : 0.26	d : 0.19	c : 0.16	e : 0.11	o : 0.06	g : 0.05	a : 0.03	r : 0.01	2 : 0.01	= : 0.01	f : 0.01	i : 0.01	] : 0.01	
b : 0.21	d : 0.19	c : 0.16	e : 0.13	] : 0.09	g : 0.05	2 : 0.05	= : 0.01	f : 0.01	i : 0.01	3 : 0.01	5 : 0.01	
d : 0.19	c : 0.16	b : 0.13	3 : 0.11	2 : 0.11	e : 0.11	] : 0.03	4 : 0.01	= : 0.01	g : 0.01	f : 0.01	i : 0.01	5 : 0.01	a : 0.01	
2 : 0.21	3 : 0.15	d : 0.13	e : 0.13	] : 0.11	c : 0.06	4 : 0.03	b : 0.03	f : 0.03	a : 0.01	= : 0.01	g : 0.01	i : 0.01	5 : 0.01	
] : 0.18	2 : 0.16	3 : 0.15	c : 0.11	d : 0.08	e : 0.06	a : 0.05	b : 0.05	4 : 0.03	i : 0.03	= : 0.01	g : 0.01	f : 0.01	5 : 0.01	
b : 0.18	c : 0.15	d : 0.13	e : 0.11	] : 0.08	i : 0.06	= : 0.05	f : 0.05	3 : 0.05	4 : 0.03	g : 0.03	2 : 0.01	a : 0.01	5 : 0.01	
c : 0.19	b : 0.15	d : 0.15	e : 0.09	= : 0.08	i : 0.08	f : 0.05	2 : 0.03	g : 0.03	] : 0.03	a : 0.03	3 : 0.01	4 : 0.01	h : 0.01	
] : 0.21	c : 0.18	d : 0.13	e : 0.09	= : 0.08	i : 0.08	g : 0.05	f : 0.05	2 : 0.03	a : 0.01	3 : 0.01	h : 0.01	b : 0.01	
c : 0.23	= : 0.13	d : 0.13	i : 0.08	e : 0.08	] : 0.06	b : 0.06	f : 0.06	g : 0.05	: : 0.03	3 : 0.03	h : 0.01	
c : 0.19	= : 0.13	d : 0.09	e : 0.09	b : 0.08	i : 0.08	] : 0.06	a : 0.05	f : 0.05	3 : 0.05	g : 0.03	h : 0.03	4 : 0.01	
c : 0.18	= : 0.11	] : 0.09	3 : 0.09	d : 0.08	i : 0.08	2 : 0.08	e : 0.06	f : 0.05	g : 0.03	a : 0.03	h : 0.03	b : 0.01	4 : 0.01	
2 : 0.16	= : 0.11	d : 0.11	] : 0.09	3 : 0.09	i : 0.08	c : 0.08	e : 0.06	g : 0.03	f : 0.03	4 : 0.03	h : 0.03	b : 0.01	a : 0.01	
= : 0.16	c : 0.11	d : 0.09	i : 0.09	b : 0.08	2 : 0.08	e : 0.08	3 : 0.08	f : 0.05	4 : 0.03	h : 0.03	F : 0.01	] : 0.01	a : 0.01	g : 0.01	
= : 0.21	c : 0.13	d : 0.11	e : 0.09	i : 0.08	f : 0.08	b : 0.06	] : 0.05	h : 0.03	2 : 0.01	F : 0.01	[ : 0.01	3 : 0.01	5 : 0.01	4 : 0.01	g : 0.01	
= : 0.21	d : 0.15	c : 0.11	e : 0.08	2 : 0.06	] : 0.06	3 : 0.06	f : 0.06	i : 0.05	F : 0.01	5 : 0.01	4 : 0.01	: : 0.01	[ : 0.01	m : 0.01	h : 0.01	

#score	713.1132827832183
#seq	60
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_CDS_m1_run1.txt

#BEAR
gggggtttttttttttggggg	chr6:26056065-26056293(-)$1	228	127	148	21.3760
gggggtttttttttttggggg	chr10:79796911-79797115(+)$1	204	17	38	21.3760
""abbtttttttttttbb]a3	chr16:30779479-30779721(+)$1	242	62	83	21.0721
ffffuuuuuuuuuuuufffff	chr4:144471081-144471352(+)$1	271	3	24	22.0443
ffffftttttttttttfffff	chr19:50001163-50001400(+)$1	237	121	142	20.8326
ccccvvvvvvvvvvvvvccc]	chr19:55648369-55648608(-)$1	239	59	80	22.9948
eeeeuuuuuuuuuuuueeeee	chr19:11107074-11107321(+)$1	247	222	243	22.1233
ddddvvvvvvvvvvvvvdddd	chr11:122930225-122930514(-)$1	289	123	144	22.4472
gggguuuuuuuuuuuuggggg	chr7:99695136-99695367(-)$1	231	171	192	22.6789
ffffwwwwwwwwwwwwwwfff	chr5:145523753-145524013(-)$1	260	58	79	21.1056
ddddwwwwwwwwwwwwwwddd	chr18:43667974-43668249(-)$1	275	252	273	21.4565
hhhwwwwwwwwwwwwwwhhhh	chr9:139732333-139732557(+)$1	224	81	102	20.2499
eeeevvvvvvvvvvvvveeee	chr19:13888857-13889126(+)$1	269	99	120	22.2028
!cccuuuuuuuuuuuuccc]c	chr6:26056116-26056350(-)$1	234	43	64	23.3143
eeeevvvvvvvvvvvvveeee	chr2:102448084-102448374(+)$1	290	240	261	22.2028
ffffwwwwwwwwwwwwwwfff	chr16:23570821-23571098(+)$1	277	97	118	21.1056
dddddtttttttttttdddd:	chr12:49233762-49233989(-)$1	227	147	168	20.2295
cccvvvvvvvvvvvvvcccdd	chr16:89348897-89349137(-)$1	240	28	49	22.4572
dddduuuuuuuuuuuudddd:	chr22:30738161-30738438(-)$1	277	126	147	21.4741
ddddwwwwwwwwwwwwwwddd	chr6:44217031-44217257(+)$1	226	84	105	21.4565
cccvvvvvvvvvvvvvccc44	chr19:10505596-10505805(-)$1	209	97	118	22.4548
ffffuuuuuuuuuuuufffff	chr10:120809212-120809421(-)$1	209	125	146	22.0443
!!bbuuuuuuuuuuuubb22=	chr12:53293458-53293826(-)$1	368	31	52	22.0822
ddyyyyyyyyyyyyyyyyddd	chr1:154130065-154130298(-)$1	233	162	183	20.3511
eeyyyyyyyyyyyyyyyyeee	chr8:144408295-144408575(-)$1	280	67	88	20.2476
c[ccctttttttttttccc]c	chr5:132203159-132203434(+)$1	275	95	116	22.3429
f[bbvvvvvvvvvvvvvbb22	chr8:144940435-144940704(-)$1	269	104	125	21.9693
"cccwwwwwwwwwwwwwwccc	chr4:144474171-144474420(+)$1	249	16	37	21.7503
====wwwwwwwwwwwwww===	chr17:7481050-7481292(+)$1	242	120	141	21.8701
eeyyyyyyyyyyyyyyyyeee	chr2:55470529-55470842(-)$1	313	57	78	20.2476
""ccctttttttttttccc]f	chr22:22892047-22892259(-)$1	212	65	86	22.0804
ffffwwwwwwwwwwwwwwfff	chrX:64958320-64958579(+)$1	259	51	72	21.1056
dcccvvvvvvvvvvvvvccc:	chrX:53581621-53581889(-)$1	268	94	115	22.0544
cccvvvvvvvvvvvvvccc]e	chr7:102957183-102957497(-)$1	314	263	284	22.5674
eeeeettttttttttteeeee	chr1:27272022-27272251(+)$1	229	129	150	20.8937
iiiiuuuuuuuuuuuuiiiii	chr16:57188049-57188340(-)$1	291	262	283	22.7843
====uuuuuuuuuuuu=====	chr18:47016818-47017023(-)$1	205	72	93	23.0456
d[ccctttttttttttccc]d	chr7:6196382-6196735(+)$1	353	185	206	22.3559
gggggtttttttttttggggg	chr6:26055959-26056209(-)$1	250	43	64	21.3760
[cccuuuuuuuuuuuuccc22	chr11:763699-763959(+)$1	260	67	88	22.9590
ddyyyyyyyyyyyyyyyyddd	chr2:233697513-233697765(+)$1	252	149	170	20.3511
dddduuuuuuuuuuuudddd2	chr17:27005786-27006072(+)$1	286	227	248	22.2710
hhhhwwwwwwwwwwwwwwhhh	chr1:70687355-70687624(+)$1	269	218	239	20.4441
iiiiwwwwwwwwwwwwwwiii	chr7:11030229-11030532(+)$1	303	75	96	21.7340
ddddwwwwwwwwwwwwwwddd	chr17:42288377-42288623(-)$1	246	149	170	21.4565
ffffuuuuuuuuuuuufffff	chr9:127998766-127998980(-)$1	214	159	180	22.0443
e!!bbtttttttttttbb]ee	chr11:122928488-122928707(-)$1	219	36	57	21.1645
ddddwwwwwwwwwwwwwwddd	chr12:57927730-57927981(-)$1	251	116	137	21.4565
!!bbvvvvvvvvvvvvvbb22	chr2:232325105-232325310(-)$1	205	72	93	22.0785
dddduuuuuuuuuuuudddd:	chr17:48462398-48462654(-)$1	256	75	96	21.4741
iiiiuuuuuuuuuuuuiiiii	chrX:16881081-16881325(-)$1	244	90	111	22.7843
ffffuuuuuuuuuuuufffff	chr6:33258000-33258229(+)$1	229	52	73	22.0443
#cccuuuuuuuuuuuuccc66	chr5:138704321-138704549(+)$1	228	150	171	22.0921
a[ddddtttttttttttdddd	chr6:32945891-32946177(+)$1	286	47	68	19.5513
iiiiuuuuuuuuuuuuiiiii	chr3:99881073-99881377(+)$1	304	55	76	22.7843
c[avvvvvvvvvvvvva]ccc	chr11:77387797-77388030(-)$1	233	151	172	22.3938
ggyyyyyyyyyyyyyyyyggg	chr12:6710712-6710961(-)$1	249	31	52	20.4938
ffffftttttttttttfffff	chr20:42310322-42310565(+)$1	243	80	101	20.8326
ddddtttttttttttdddd44	chr12:7044796-7045092(+)$1	296	11	32	20.6485
d[bbtttttttttttbbdddd	chr1:36921329-36921570(-)$1	241	124	145	20.7325
d[ccctttttttttttcccdd	chr12:30881593-30881953(-)$1	360	16	37	22.2462
ddbbuuuuuuuuuuuubb]dd	chr22:30974789-30975053(-)$1	264	120	141	22.2343
ddddtttttttttttdddd]d	chr1:50941135-50941452(-)$1	317	236	257	20.7606
!!bbvvvvvvvvvvvvvbb22	chr2:232325094-232325300(-)$1	206	62	83	22.0785
eewwwwwwwwwwwwwweeeee	chr17:7751240-7751566(+)$1	326	205	226	20.3898
d[bbvvvvvvvvvvvvvbbdd	chr19:8547941-8548163(+)$1	222	144	165	22.2974
[cccuuuuuuuuuuuuccc]b	chr5:139905851-139906080(+)$1	229	92	113	23.0388

#otherMatches

#Seq PSSM
CCACUGUAACCAAGAAAGUGG	chr6:26056065-26056293(-)$1	228	127	148	21.3760
GGAUGUACUCUUUUCUCAUUC	chr10:79796911-79797115(+)$1	204	17	38	21.3760
CCCCCGACAACAGAAAGGAGA	chr16:30779479-30779721(+)$1	242	62	83	21.0721
UUUAAAAUUGAAAUCAUGAAA	chr4:144471081-144471352(+)$1	271	3	24	22.0443
ACCUGUCCCCCUGCUUCAGGU	chr19:50001163-50001400(+)$1	237	121	142	20.8326
GGCGGGAGAUGAAGGUGCGCA	chr19:55648369-55648608(-)$1	239	59	80	22.9948
GUUCUUUUAAAAUUACGAACA	chr19:11107074-11107321(+)$1	247	222	243	22.1233
GAACUGAAUGCUGACCUGUUC	chr11:122930225-122930514(-)$1	289	123	144	22.4472
AUUUAGGAGGAAAAAAGGAUG	chr7:99695136-99695367(-)$1	231	171	192	22.6789
AGUGAACCAGUAAAGAUACAC	chr5:145523753-145524013(-)$1	260	58	79	21.1056
GAAGGCAUAUUUUAAUUACUU	chr18:43667974-43668249(-)$1	275	252	273	21.4565
GCCAGGGACGAGAAGAAGGUG	chr9:139732333-139732557(+)$1	224	81	102	20.2499
CCCCAGCCAAGAAGAAAGGGG	chr19:13888857-13889126(+)$1	269	99	120	22.2028
AGCCCAAGGUUAAAAAGGCGG	chr6:26056116-26056350(-)$1	234	43	64	23.3143
CUGCUCCGUAGGCCUUUGCAG	chr2:102448084-102448374(+)$1	290	240	261	22.2028
AGUAAACACACCCAAAGAUGC	chr16:23570821-23571098(+)$1	277	97	118	21.1056
ACUCUAAGAAGGAUGAAGAGG	chr12:49233762-49233989(-)$1	227	147	168	20.2295
CUUGAAAAGUUGGAAGAAGAG	chr16:89348897-89349137(-)$1	240	28	49	22.4572
UUCCAGGAACGUGagaggaag	chr22:30738161-30738438(-)$1	277	126	147	21.4741
CUUGGACAAGAUUCGCUAUGA	chr6:44217031-44217257(+)$1	226	84	105	21.4565
ACUAAGAUUAAGGUAGGGUCC	chr19:10505596-10505805(-)$1	209	97	118	22.4548
UUGAUUUUAUUUUGUUUUAAU	chr10:120809212-120809421(-)$1	209	125	146	22.0443
GACAACAGCCGCUCCCUGGAC	chr12:53293458-53293826(-)$1	368	31	52	22.0822
GCUUGACCUGAAUGAGAUGUA	chr1:154130065-154130298(-)$1	233	162	183	20.3511
GCGGUGGAAGAGAGGGAAGUC	chr8:144408295-144408575(-)$1	280	67	88	20.2476
CCUAUGAAAAUGACAAAUGAG	chr5:132203159-132203434(+)$1	275	95	116	22.3429
CCCCGUGCGCAACCUGAGGCU	chr8:144940435-144940704(-)$1	269	104	125	21.9693
UUACUAAAGUGUUAUAAUGUG	chr4:144474171-144474420(+)$1	249	16	37	21.7503
AGACGUGAUUAUGAGGGAGUU	chr17:7481050-7481292(+)$1	242	120	141	21.8701
UUGACUGGAGGAAAUAUGAAC	chr2:55470529-55470842(-)$1	313	57	78	20.2476
GUGGACUCUUUAUUUUUCCUU	chr22:22892047-22892259(-)$1	212	65	86	22.0804
CCAAUUUAUCCGUAGGCCUUG	chrX:64958320-64958579(+)$1	259	51	72	21.1056
CUGCAAUCCUCACAACAGCAA	chrX:53581621-53581889(-)$1	268	94	115	22.0544
CUGGAGAUAAUGUAGACAGAC	chr7:102957183-102957497(-)$1	314	263	284	22.5674
CAGAAGAAACAGGAGAUUCUG	chr1:27272022-27272251(+)$1	229	129	150	20.8937
UUUAACCAAUCCAAUCUAAAA	chr16:57188049-57188340(-)$1	291	262	283	22.7843
AAUGACUCAUCAUCUCCAUUU	chr18:47016818-47017023(-)$1	205	72	93	23.0456
UGGCUUUCCUCUCUCUGGUGG	chr7:6196382-6196735(+)$1	353	185	206	22.3559
CCACUGUAACCAAGAAAGUGG	chr6:26055959-26056209(-)$1	250	43	64	21.3760
AUCUACAACUACUACAAGAAG	chr11:763699-763959(+)$1	260	67	88	22.9590
CGGCAUGAGGAAGAAGAACGG	chr2:233697513-233697765(+)$1	252	149	170	20.3511
AGCCCUCAGACCCCAAGGCUG	chr17:27005786-27006072(+)$1	286	227	248	22.2710
CUAACACACACAAUUUCCUUA	chr1:70687355-70687624(+)$1	269	218	239	20.4441
AUAUAUGUUAAUAUUUUAAUA	chr7:11030229-11030532(+)$1	303	75	96	21.7340
UGCUGAACAUCAACAAGAAGC	chr17:42288377-42288623(-)$1	246	149	170	21.4565
UUUGUUAGGAAAAAAUUGAAA	chr9:127998766-127998980(-)$1	214	159	180	22.0443
UAACAUUAAAAGAACUUGCAG	chr11:122928488-122928707(-)$1	219	36	57	21.1645
GCUGGAAGCAACAAAGAACAG	chr12:57927730-57927981(-)$1	251	116	137	21.4565
AAUGGCCAAACAGAAAGCAGC	chr2:232325105-232325310(-)$1	205	72	93	22.0785
GGCGGAAGAGAAGGAGCGCCG	chr17:48462398-48462654(-)$1	256	75	96	21.4741
UUUCUUAAACAGACCUGAAGG	chrX:16881081-16881325(-)$1	244	90	111	22.7843
GACCUGUACUAGCCAUGGUUC	chr6:33258000-33258229(+)$1	229	52	73	22.0443
GUACGGAAAUAUUUGAGUAGA	chr5:138704321-138704549(+)$1	228	150	171	22.0921
CAGGGUCCAAUAUCCAAGCCC	chr6:32945891-32946177(+)$1	286	47	68	19.5513
UUCUUUCUCAUAUCUUAGAAG	chr3:99881073-99881377(+)$1	304	55	76	22.7843
UGGAUGAAGAAGAGAGCGAGG	chr11:77387797-77388030(-)$1	233	151	172	22.3938
GCCUAAAUCAUCUGCUCAGCU	chr12:6710712-6710961(-)$1	249	31	52	20.4938
CUGUCUUUCUGGUGUUGGCAG	chr20:42310322-42310565(+)$1	243	80	101	20.8326
GGACAACCGAAGCACGUCCCC	chr12:7044796-7045092(+)$1	296	11	32	20.6485
GAGGAACCCAGACAGCCCUGC	chr1:36921329-36921570(-)$1	241	124	145	20.7325
CACCUAAAUCCAAAGCAGGGU	chr12:30881593-30881953(-)$1	360	16	37	22.2462
CCCAGGAGGAGGAGAGUGAGG	chr22:30974789-30975053(-)$1	264	120	141	22.2343
CAGAUUGUCUUUGAUUUUGUA	chr1:50941135-50941452(-)$1	317	236	257	20.7606
AAUGGCCAAACAGAAAGCAGC	chr2:232325094-232325300(-)$1	206	62	83	22.0785
UGCCACCAAAAUACCUCAGGA	chr17:7751240-7751566(+)$1	326	205	226	20.3898
CAGGGAGGAGGUAGGAACCGC	chr19:8547941-8548163(+)$1	222	144	165	22.2974
AUGUGAAUUCCUCUAAAUACC	chr5:139905851-139906080(+)$1	229	92	113	23.0388

#DB
(((((...........)))))	chr6:26056065-26056293(-)$1	1	127	148	21.3760
(((((...........)))))	chr10:79796911-79797115(+)$1	1	17	38	21.3760
..(((...........)).).	chr16:30779479-30779721(+)$1	1	62	83	21.0721
((((............)))))	chr4:144471081-144471352(+)$1	1	3	24	22.0443
(((((...........)))))	chr19:50001163-50001400(+)$1	1	121	142	20.8326
((((.............))).	chr19:55648369-55648608(-)$1	1	59	80	22.9948
((((............)))))	chr19:11107074-11107321(+)$1	1	222	243	22.1233
((((.............))))	chr11:122930225-122930514(-)$1	1	123	144	22.4472
((((............)))))	chr7:99695136-99695367(-)$1	1	171	192	22.6789
((((..............)))	chr5:145523753-145524013(-)$1	1	58	79	21.1056
((((..............)))	chr18:43667974-43668249(-)$1	1	252	273	21.4565
(((..............))))	chr9:139732333-139732557(+)$1	1	81	102	20.2499
((((.............))))	chr19:13888857-13889126(+)$1	1	99	120	22.2028
.(((............))).)	chr6:26056116-26056350(-)$1	1	43	64	23.3143
((((.............))))	chr2:102448084-102448374(+)$1	1	240	261	22.2028
((((..............)))	chr16:23570821-23571098(+)$1	1	97	118	21.1056
)((((...........)))).	chr12:49233762-49233989(-)$1	1	147	168	20.2295
(((.............)))))	chr16:89348897-89349137(-)$1	1	28	49	22.4572
((((............)))).	chr22:30738161-30738438(-)$1	1	126	147	21.4741
((((..............)))	chr6:44217031-44217257(+)$1	1	84	105	21.4565
(((.............)))..	chr19:10505596-10505805(-)$1	1	97	118	22.4548
((((............)))))	chr10:120809212-120809421(-)$1	1	125	146	22.0443
..((............))..)	chr12:53293458-53293826(-)$1	1	31	52	22.0822
((................)))	chr1:154130065-154130298(-)$1	1	162	183	20.3511
((................)))	chr8:144408295-144408575(-)$1	1	67	88	20.2476
(.(((...........))).)	chr5:132203159-132203434(+)$1	1	95	116	22.3429
(.((.............))..	chr8:144940435-144940704(-)$1	1	104	125	21.9693
.(((..............)))	chr4:144474171-144474420(+)$1	1	16	37	21.7503
((((..............)))	chr17:7481050-7481292(+)$1	1	120	141	21.8701
((................)))	chr2:55470529-55470842(-)$1	1	57	78	20.2476
..(((...........))).)	chr22:22892047-22892259(-)$1	1	65	86	22.0804
((((..............)))	chrX:64958320-64958579(+)$1	1	51	72	21.1056
)(((.............))).	chrX:53581621-53581889(-)$1	1	94	115	22.0544
(((.............))).)	chr7:102957183-102957497(-)$1	1	263	284	22.5674
(((((...........)))))	chr1:27272022-27272251(+)$1	1	129	150	20.8937
((((............)))))	chr16:57188049-57188340(-)$1	1	262	283	22.7843
((((............)))))	chr18:47016818-47017023(-)$1	1	72	93	23.0456
(.(((...........))).)	chr7:6196382-6196735(+)$1	1	185	206	22.3559
(((((...........)))))	chr6:26055959-26056209(-)$1	1	43	64	21.3760
.(((............)))..	chr11:763699-763959(+)$1	1	67	88	22.9590
((................)))	chr2:233697513-233697765(+)$1	1	149	170	20.3511
((((............)))).	chr17:27005786-27006072(+)$1	1	227	248	22.2710
((((..............)))	chr1:70687355-70687624(+)$1	1	218	239	20.4441
((((..............)))	chr7:11030229-11030532(+)$1	1	75	96	21.7340
((((..............)))	chr17:42288377-42288623(-)$1	1	149	170	21.4565
((((............)))))	chr9:127998766-127998980(-)$1	1	159	180	22.0443
(..((...........)).))	chr11:122928488-122928707(-)$1	1	36	57	21.1645
((((..............)))	chr12:57927730-57927981(-)$1	1	116	137	21.4565
..((.............))..	chr2:232325105-232325310(-)$1	1	72	93	22.0785
((((............)))).	chr17:48462398-48462654(-)$1	1	75	96	21.4741
((((............)))))	chrX:16881081-16881325(-)$1	1	90	111	22.7843
((((............)))))	chr6:33258000-33258229(+)$1	1	52	73	22.0443
.(((............)))..	chr5:138704321-138704549(+)$1	1	150	171	22.0921
(.((((...........))))	chr6:32945891-32946177(+)$1	1	47	68	19.5513
((((............)))))	chr3:99881073-99881377(+)$1	1	55	76	22.7843
(.(.............).)))	chr11:77387797-77388030(-)$1	1	151	172	22.3938
((................)))	chr12:6710712-6710961(-)$1	1	31	52	20.4938
(((((...........)))))	chr20:42310322-42310565(+)$1	1	80	101	20.8326
((((...........))))..	chr12:7044796-7045092(+)$1	1	11	32	20.6485
(.((...........))))))	chr1:36921329-36921570(-)$1	1	124	145	20.7325
(.(((...........)))))	chr12:30881593-30881953(-)$1	1	16	37	22.2462
((((............)).))	chr22:30974789-30975053(-)$1	1	120	141	22.2343
((((...........)))).)	chr1:50941135-50941452(-)$1	1	236	257	20.7606
..((.............))..	chr2:232325094-232325300(-)$1	1	62	83	22.0785
((..............)))))	chr17:7751240-7751566(+)$1	1	205	226	20.3898
(.((.............))))	chr19:8547941-8548163(+)$1	1	144	165	22.2974
.(((............))).)	chr5:139905851-139906080(+)$1	1	92	113	23.0388

#PSSM
d : 0.28	f : 0.14	e : 0.11	c : 0.08	g : 0.07	! : 0.05	i : 0.05	" : 0.04	h : 0.02	= : 0.02	[ : 0.02	# : 0.01	a : 0.01	
d : 0.20	c : 0.14	f : 0.13	[ : 0.11	e : 0.10	g : 0.07	! : 0.05	i : 0.05	" : 0.02	h : 0.02	= : 0.02	
c : 0.20	d : 0.17	f : 0.13	b : 0.10	y : 0.07	g : 0.05	e : 0.05	i : 0.05	a : 0.02	h : 0.02	= : 0.02	! : 0.01	w : 0.01	
d : 0.17	c : 0.16	b : 0.13	f : 0.13	y : 0.07	g : 0.05	e : 0.05	v : 0.05	i : 0.05	w : 0.02	= : 0.02	h : 0.01	
u : 0.28	v : 0.19	w : 0.19	y : 0.07	c : 0.05	g : 0.04	t : 0.04	b : 0.02	f : 0.02	d : 0.02	e : 0.01	
u : 0.28	t : 0.23	v : 0.19	w : 0.19	y : 0.07	d : 0.01	
u : 0.28	t : 0.25	v : 0.19	w : 0.19	y : 0.07	
u : 0.28	t : 0.25	v : 0.19	w : 0.19	y : 0.07	
u : 0.28	t : 0.25	v : 0.19	w : 0.19	y : 0.07	
u : 0.28	t : 0.25	v : 0.19	w : 0.19	y : 0.07	
u : 0.28	t : 0.25	v : 0.19	w : 0.19	y : 0.07	
u : 0.28	t : 0.25	v : 0.19	w : 0.19	y : 0.07	
u : 0.28	t : 0.25	v : 0.19	w : 0.19	y : 0.07	
u : 0.28	t : 0.25	v : 0.19	w : 0.19	y : 0.07	
u : 0.28	t : 0.25	v : 0.19	w : 0.19	y : 0.07	
u : 0.28	t : 0.20	v : 0.19	w : 0.19	y : 0.07	d : 0.02	b : 0.01	
w : 0.17	c : 0.16	v : 0.13	f : 0.08	d : 0.08	b : 0.07	y : 0.07	g : 0.05	e : 0.04	i : 0.04	= : 0.01	t : 0.01	a : 0.01	
c : 0.19	w : 0.16	d : 0.13	b : 0.11	f : 0.08	e : 0.07	y : 0.07	g : 0.05	i : 0.04	h : 0.01	= : 0.01	] : 0.01	
c : 0.22	d : 0.22	f : 0.13	e : 0.10	g : 0.07	b : 0.05	i : 0.05	] : 0.04	h : 0.02	= : 0.02	2 : 0.01	
d : 0.25	f : 0.13	e : 0.11	] : 0.10	g : 0.07	2 : 0.07	c : 0.05	i : 0.05	h : 0.02	4 : 0.02	= : 0.02	a : 0.01	6 : 0.01	
d : 0.22	f : 0.14	e : 0.13	g : 0.07	2 : 0.07	c : 0.05	: : 0.05	i : 0.05	= : 0.04	h : 0.02	4 : 0.02	3 : 0.01	] : 0.01	6 : 0.01	b : 0.01	

#score	1452.6635207738489
#seq	67
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_UTR_m1_run2.txt

#BEAR
dd!!cccuuuuuuuuuuuuccc]dddd]	chr17:61671441-61671707(+)$1	266	161	189	24.0967
d!!ddddwwwwwwwwwwwwwwdddd333	chr20:42161293-42161583(+)$1	290	97	125	22.3164
!gggggggtttttttttttggggggg22	chr11:96117771-96118049(-)$1	278	111	139	23.4762
!!eeeeevvvvvvvvvvvvveeeee444	chr14:35786333-35786618(+)$1	285	32	60	22.7170
a[ddddvvvvvvvvvvvvvdddd]a]a]	chr2:97285147-97285402(-)$1	255	147	175	22.5501
eee[cccyyyyyyyyyyyyyyyyccc22	chr18:12985107-12985363(+)$1	256	207	235	23.0008
[ccc!!bbtttttttttttbb]ccc22e	chr20:34214157-34214415(-)$1	258	84	112	22.5505
:::dddduuuuuuuuuuuuddddggggg	chr16:278610-278872(-)$1	262	107	135	21.0743
gggggggtttttttttttggggggg]dd	chr15:41067644-41067920(-)$1	276	107	135	22.9911
eeee[ayyyyyyyyyyyyyyyya]eeee	chr17:48548188-48548500(+)$1	312	140	168	23.6210
gggggbbuuuuuuuuuuuubb]gggggg	chr14:31066511-31066765(+)$1	254	45	73	24.9371
ff[ddddtttttttttttdddd]fffff	chr14:39618388-39618664(-)$1	276	29	57	21.9042
fffffwwwwwwwwwwwwwwffffffeee	chr7:155573324-155573559(+)$1	235	88	116	21.7479
ffffffvvvvvvvvvvvvvffffff]==	chr4:119665151-119665425(-)$1	274	47	75	22.6306
cc!!ddddtttttttttttdddd]cccd	chr11:47259257-47259522(+)$1	265	109	137	22.1992
hhhhhhhuuuuuuuuuuuuhhhhhhhh2	chr11:1006410-1006705(+)$1	295	78	106	21.8909
gggggggvvvvvvvvvvvvvggggggge	chr1:70696657-70696886(+)$1	229	66	94	24.0629
cc!!cccwwwwwwwwwwwwwwccc22cc	chr7:44613636-44613902(-)$1	266	176	204	22.5687
gggggggwwwwwwwwwwwwwwggggggg	chr7:26230687-26230949(-)$1	262	46	74	23.7404
fffffyyyyyyyyyyyyyyyyffffffc	chr1:146696512-146696783(-)$1	271	102	130	23.9763
cffffffvvvvvvvvvvvvvffffff::	chr1:111492604-111492865(-)$1	261	133	161	20.9127
iiiiiiiuuuuuuuuuuuuiiiiiiiii	chr16:88783863-88784147(-)$1	284	227	255	25.0319
gggggggvvvvvvvvvvvvvggggggg]	chr16:84115377-84115631(-)$1	254	19	47	24.3169
fff[cccxxxxxxxxxxxxxxxcccfff	chr1:1326145-1326358(-)$1	213	122	150	19.3645
ffffffwwwwwwwwwwwwwwffffff::	chr7:7273808-7274067(+)$1	259	231	259	20.5552
[ffffffwwwwwwwwwwwwwwffffff2	chr9:108314336-108314595(+)$1	259	217	245	22.4248
gggggggwwwwwwwwwwwwwwggggggg	chrX:48890919-48891190(-)$1	271	178	206	23.7404
========ttttttttttt=========	chr10:118645938-118646207(-)$1	269	37	65	23.7024
e[bb[bbuuuuuuuuuuuubb]bb]eee	chr4:146080101-146080393(-)$1	292	212	240	22.7477
gggggyyyyyyyyyyyyyyyyggggggg	chr11:243912-244198(+)$1	286	90	118	25.3672
ddd[cccuuuuuuuuuuuuccc]dddd]	chr3:66413168-66413458(+)$1	290	68	96	23.9356
ggg!!ccctttttttttttcccgggggg	chr16:57238306-57238566(+)$1	260	54	82	24.1990
ddddyyyyyyyyyyyyyyyyddddeeee	chr18:23663991-23664254(-)$1	263	216	244	22.8239
:ffffffuuuuuuuuuuuuffffffbbe	chr4:99955239-99955522(+)$1	283	17	45	22.2437
"fffffftttttttttttffffff22a]	chr2:102774048-102774307(+)$1	259	57	85	21.8978
dd[ddddwwwwwwwwwwwwwwdddd]dd	chr12:123641313-123641570(-)$1	257	168	196	21.6134
=====yyyyyyyyyyyyyyyy=======	chr21:37415878-37416138(-)$1	260	132	160	25.1259
gggggyyyyyyyyyyyyyyyyggggggg	chr9:114135549-114135795(-)$1	246	80	108	25.3672
:dddd[auuuuuuuuuuuua]dddd::G	chr18:9563404-9563665(-)$1	261	178	206	20.5539
""eeeeeuuuuuuuuuuuueeeeeccc]	chr1:211485946-211486195(+)$1	249	125	153	23.9147
%%cccwwwwwwwwwwwwwwccc333eee	chr13:32863622-32863910(+)$1	288	127	155	20.8040
fffffyyyyyyyyyyyyyyyyffffff3	chr8:8861466-8861724(+)$1	258	217	245	24.2541
eeee[ccctttttttttttccceeeee2	chr19:9529698-9529962(-)$1	264	6	34	23.1102
=====yyyyyyyyyyyyyyyy=======	chr9:19336155-19336410(+)$1	255	22	50	25.1259
[cccyyyyyyyyyyyyyyyycccggggg	chr4:56283863-56284133(+)$1	270	211	239	24.3885
eeeeeyyyyyyyyyyyyyyyyeeeee22	chr9:134067478-134067739(+)$1	261	177	205	23.9365
cc[dddduuuuuuuuuuuudddd]ccc]	chr1:1337496-1337745(-)$1	249	86	114	24.0345
ddddyyyyyyyyyyyyyyyydddd]ggg	chr3:14188746-14188999(-)$1	253	80	108	23.2970
:eeeeevvvvvvvvvvvvveeeee:fff	chr1:118476984-118477246(+)$1	262	14	42	20.2927
iieeeeeuuuuuuuuuuuueeeeeccc#	chr12:31242213-31242465(+)$1	252	162	190	23.4651
gggggggtttttttttttggggggg333	chr6:158451321-158451580(+)$1	259	98	126	23.5605
:ddddwwwwwwwwwwwwwwddddggggg	chr10:99236362-99236619(-)$1	257	89	117	21.2201
"ccc[bbtttttttttttbb]ccc]eee	chr17:42267746-42268013(+)$1	267	201	229	22.3964
ggggggbbtttttttttttbb]gggggg	chr11:95528572-95528809(+)$1	237	25	53	23.6106
Fgggggggtttttttttttggggggg:i	chr7:104745954-104746229(+)$1	275	214	242	22.2538
eeee[bbuuuuuuuuuuuubbeeeeebb	chr5:38886244-38886517(+)$1	273	126	154	23.2302
gggggggwwwwwwwwwwwwwwggggggg	chr5:64942771-64943016(+)$1	245	145	173	23.7404
hhhhhhhuuuuuuuuuuuuhhhhhhhh]	chr14:31856431-31856682(-)$1	251	144	172	22.0515

#otherMatches

#Seq PSSM
ACUUUGUAAUAAAACUUGAACAUGUAUA	chr17:61671441-61671707(+)$1	266	161	189	24.0967
GCAGCUCCUUUUUUUCCCCUAGAGUCCC	chr20:42161293-42161583(+)$1	290	97	125	22.3164
CUUUAUUUUAUAGAAGCUUAAGUGAAAA	chr11:96117771-96118049(-)$1	278	111	139	23.4762
uaugggaguuuauuauacuaucccacuu	chr14:35786333-35786618(+)$1	285	32	60	22.7170
UGUUGCUGUGGACAAGUGUGCAAGGAGA	chr2:97285147-97285402(-)$1	255	147	175	22.5501
GCGAGCUCCUUUUCCCCUUCCCCAGCGC	chr18:12985107-12985363(+)$1	256	207	235	23.0008
ACCACUGACUUUUCCCUUUUCUUGGCAG	chr20:34214157-34214415(-)$1	258	84	112	22.5505
CCAGCUGCCCCCUUCCCCCCAGCACACA	chr16:278610-278872(-)$1	262	107	135	21.0743
CUUUUCCCAAUAUUUCUAGGAAAGGCAG	chr15:41067644-41067920(-)$1	276	107	135	22.9911
CUCACCUGAUCCCUCUGCACGUGCUGAG	chr17:48548188-48548500(+)$1	312	140	168	23.6210
UGUUACAUAAUAUAUCACCUGAUAACAG	chr14:31066511-31066765(+)$1	254	45	73	24.9371
CAUAAGCAGUUAUCUCCAGCUUUUGUUA	chr14:39618388-39618664(-)$1	276	29	57	21.9042
AGCCUUGAGAACUCCACGUGGGCUGGGU	chr7:155573324-155573559(+)$1	235	88	116	21.7479
UAAAAUUUAAACCAAAAACAUUUUGUAA	chr4:119665151-119665425(-)$1	274	47	75	22.6306
GCCGGCCUCUCCAUCUCCUAGGCAGCCU	chr11:47259257-47259522(+)$1	265	109	137	22.1992
AAAUGGUGUGUGUGAAAAAAUUGUUUUU	chr11:1006410-1006705(+)$1	295	78	106	21.8909
AACCAUUACCUUUAUUUAACAGUGGUUU	chr1:70696657-70696886(+)$1	229	66	94	24.0629
UGUAGUCCAAAGUACCCCGUCGACCCCA	chr7:44613636-44613902(-)$1	266	176	204	22.5687
GAGAAUAAUUUUUAUAAACCCUGUUUUC	chr7:26230687-26230949(-)$1	262	46	74	23.7404
GUCUUUUGUCAUCCUUUCUUUAGGACAG	chr1:146696512-146696783(-)$1	271	102	130	23.9763
UGGCAUCAACAUCAGAUAAAGGUGCCCA	chr1:111492604-111492865(-)$1	261	133	161	20.9127
gcaggaguugcguuucauucuccugccu	chr16:88783863-88784147(-)$1	284	227	255	25.0319
UGCAGGCCUCUUGUGUGCACGUUUGUAG	chr16:84115377-84115631(-)$1	254	19	47	24.3169
GAACGACAGCCUUCGCACCGACGUCUUC	chr1:1326145-1326358(-)$1	213	122	150	19.3645
GUUGGGAGAAAAGGUUGACACCCAGCCU	chr7:7273808-7274067(+)$1	259	231	259	20.5552
CAAGACAAAGCCUUUUUAAAAUGUUUUU	chr9:108314336-108314595(+)$1	259	217	245	22.4248
ACUGGGCACUCUCAUCCCUAAGUCCAGU	chrX:48890919-48891190(-)$1	271	178	206	23.7404
UUGGGUUUUAUGUUAGUCUGAAUCCAGA	chr10:118645938-118646207(-)$1	269	37	65	23.7024
UGUGAGUAAAUAUGUCUGAACGUAGAAU	chr4:146080101-146080393(-)$1	292	212	240	22.7477
GACAUCCUAUAAUUUCUCUCCAUGUUUU	chr11:243912-244198(+)$1	286	90	118	25.3672
AAUUCAAAUAUUUAAUAACUUGUAUUUU	chr3:66413168-66413458(+)$1	290	68	96	23.9356
UAAUUAAGUGGUCAAGAAUCUUUUAUUC	chr16:57238306-57238566(+)$1	260	54	82	24.1990
ccugguuuuuuuuuccugugcagguggg	chr18:23663991-23664254(-)$1	263	216	244	22.8239
ACUUGUUGGCUUGGUUUUAAACAAGAGA	chr4:99955239-99955522(+)$1	283	17	45	22.2437
AUUUAGUUUUAGAGAUUUGCUGGAAAAG	chr2:102774048-102774307(+)$1	259	57	85	21.8978
CAUGACGCUAAAGAAAUUCCAUGUUUUG	chr12:123641313-123641570(-)$1	257	168	196	21.6134
UUUAAUAAAAAUAUCAAAACCUUAAGAC	chr21:37415878-37416138(-)$1	260	132	160	25.1259
UCAGAUUUUUUUCUCUUUAUUUCUGGUA	chr9:114135549-114135795(-)$1	246	80	108	25.3672
CAUCAGUAUAGAAAAGAGAAGUGAUUUG	chr18:9563404-9563665(-)$1	261	178	206	20.5539
AUAUGGUAAAGAUUUUCAAGCUAUUGCA	chr1:211485946-211486195(+)$1	249	125	153	23.9147
CAUGCAAUUUCUCUCUUUAGCAAUUGGA	chr13:32863622-32863910(+)$1	288	127	155	20.8040
CAAUUAUCUUUCUCCUUCUAAGGUUGUU	chr8:8861466-8861724(+)$1	258	217	245	24.2541
CUGCCUUCAAGAAAAGACAGAAGUAGAA	chr19:9529698-9529962(-)$1	264	6	34	23.1102
uauauaaacauacacacacacauauaug	chr9:19336155-19336410(+)$1	255	22	50	25.1259
CAAGCUCUUACAUUAACAUUCUUAGCAG	chr4:56283863-56284133(+)$1	270	211	239	24.3885
GCCUUUCUCAUUUUCUCCAUCAGGGUCA	chr9:134067478-134067739(+)$1	261	177	205	23.9365
GUUCUGAUUCAUUCUUUUUUCAGUGCCA	chr1:1337496-1337745(-)$1	249	86	114	24.0345
AGUGCUUAACACUUUUCUCCCACUUCAU	chr3:14188746-14188999(-)$1	253	80	108	23.2970
UGGUGCUCUUAAUUUUACUGUGCCUGAG	chr1:118476984-118477246(+)$1	262	14	42	20.2927
GUGCAGCUUAUCAACGACCGCUGUGUGG	chr12:31242213-31242465(+)$1	252	162	190	23.4651
UGCCUCUCUCCCUUUGCCAGAGGCAGCC	chr6:158451321-158451580(+)$1	259	98	126	23.5605
CCAACCUCAUUUUUUCUCUGUUGCCACA	chr10:99236362-99236619(-)$1	257	89	117	21.2201
CGUUCUCUGAACAUUACCGACAACUGUG	chr17:42267746-42268013(+)$1	267	201	229	22.3964
UUUUGUUCUAUUUAGUCAUGAUACGAAA	chr11:95528572-95528809(+)$1	237	25	53	23.6106
AGAAUGAGCCAAAUGCCAACUCAUUCCU	chr7:104745954-104746229(+)$1	275	214	242	22.2538
CUGUAGAUCUUUGCCUCAUUCACAGCGG	chr5:38886244-38886517(+)$1	273	126	154	23.2302
UUCAGCCUCCAAUGCUGCAGUGGCUGAA	chr5:64942771-64943016(+)$1	245	145	173	23.7404
AGAAAAAUUUUGCUGCCUUUUUUUCUCA	chr14:31856431-31856682(-)$1	251	144	172	22.0515

#DB
((..(((............))).)))).	chr17:61671441-61671707(+)$1	1	161	189	24.0967
(..((((..............))))...	chr20:42161293-42161583(+)$1	1	97	125	22.3164
.(((((((...........)))))))..	chr11:96117771-96118049(-)$1	1	111	139	23.4762
..(((((.............)))))...	chr14:35786333-35786618(+)$1	1	32	60	22.7170
(.((((.............)))).).).	chr2:97285147-97285402(-)$1	1	147	175	22.5501
(((.(((................)))..	chr18:12985107-12985363(+)$1	1	207	235	23.0008
.(((..((...........)).)))..)	chr20:34214157-34214415(-)$1	1	84	112	22.5505
...((((............))))(((((	chr16:278610-278872(-)$1	1	107	135	21.0743
(((((((...........))))))).))	chr15:41067644-41067920(-)$1	1	107	135	22.9911
((((.(................).))))	chr17:48548188-48548500(+)$1	1	140	168	23.6210
(((((((............)).))))))	chr14:31066511-31066765(+)$1	1	45	73	24.9371
((.((((...........)))).)))))	chr14:39618388-39618664(-)$1	1	29	57	21.9042
(((((..............)))))))))	chr7:155573324-155573559(+)$1	1	88	116	21.7479
((((((.............)))))).))	chr4:119665151-119665425(-)$1	1	47	75	22.6306
((..((((...........)))).)))(	chr11:47259257-47259522(+)$1	1	109	137	22.1992
(((((((............)))))))).	chr11:1006410-1006705(+)$1	1	78	106	21.8909
(((((((.............))))))))	chr1:70696657-70696886(+)$1	1	66	94	24.0629
((..(((..............)))..))	chr7:44613636-44613902(-)$1	1	176	204	22.5687
(((((((..............)))))))	chr7:26230687-26230949(-)$1	1	46	74	23.7404
(((((................)))))))	chr1:146696512-146696783(-)$1	1	102	130	23.9763
)((((((.............))))))..	chr1:111492604-111492865(-)$1	1	133	161	20.9127
(((((((............)))))))))	chr16:88783863-88784147(-)$1	1	227	255	25.0319
(((((((.............))))))).	chr16:84115377-84115631(-)$1	1	19	47	24.3169
(((.(((...............))))))	chr1:1326145-1326358(-)$1	1	122	150	19.3645
((((((..............))))))..	chr7:7273808-7274067(+)$1	1	231	259	20.5552
.((((((..............)))))).	chr9:108314336-108314595(+)$1	1	217	245	22.4248
(((((((..............)))))))	chrX:48890919-48891190(-)$1	1	178	206	23.7404
((((((((...........)))))))))	chr10:118645938-118646207(-)$1	1	37	65	23.7024
(.((.((............)).)).)))	chr4:146080101-146080393(-)$1	1	212	240	22.7477
(((((................)))))))	chr11:243912-244198(+)$1	1	90	118	25.3672
(((.(((............))).)))).	chr3:66413168-66413458(+)$1	1	68	96	23.9356
(((..(((...........)))))))))	chr16:57238306-57238566(+)$1	1	54	82	24.1990
((((................))))))))	chr18:23663991-23664254(-)$1	1	216	244	22.8239
.((((((............))))))(((	chr4:99955239-99955522(+)$1	1	17	45	22.2437
.((((((...........))))))..).	chr2:102774048-102774307(+)$1	1	57	85	21.8978
((.((((..............)))).))	chr12:123641313-123641570(-)$1	1	168	196	21.6134
(((((................)))))))	chr21:37415878-37416138(-)$1	1	132	160	25.1259
(((((................)))))))	chr9:114135549-114135795(-)$1	1	80	108	25.3672
.((((.(............).))))..)	chr18:9563404-9563665(-)$1	1	178	206	20.5539
..(((((............)))))))).	chr1:211485946-211486195(+)$1	1	125	153	23.9147
..(((..............)))...)))	chr13:32863622-32863910(+)$1	1	127	155	20.8040
(((((................)))))).	chr8:8861466-8861724(+)$1	1	217	245	24.2541
((((.(((...........)))))))).	chr19:9529698-9529962(-)$1	1	6	34	23.1102
(((((................)))))))	chr9:19336155-19336410(+)$1	1	22	50	25.1259
.(((................))))))))	chr4:56283863-56284133(+)$1	1	211	239	24.3885
(((((................)))))..	chr9:134067478-134067739(+)$1	1	177	205	23.9365
((.((((............)))).))).	chr1:1337496-1337745(-)$1	1	86	114	24.0345
((((................)))).)))	chr3:14188746-14188999(-)$1	1	80	108	23.2970
.(((((.............))))).(((	chr1:118476984-118477246(+)$1	1	14	42	20.2927
))(((((............)))))(((.	chr12:31242213-31242465(+)$1	1	162	190	23.4651
(((((((...........)))))))...	chr6:158451321-158451580(+)$1	1	98	126	23.5605
.((((..............))))(((((	chr10:99236362-99236619(-)$1	1	89	117	21.2201
.(((.((...........)).))).)))	chr17:42267746-42268013(+)$1	1	201	229	22.3964
((((((((...........)).))))))	chr11:95528572-95528809(+)$1	1	25	53	23.6106
)(((((((...........))))))).(	chr7:104745954-104746229(+)$1	1	214	242	22.2538
((((.((............)))))))((	chr5:38886244-38886517(+)$1	1	126	154	23.2302
(((((((..............)))))))	chr5:64942771-64943016(+)$1	1	145	173	23.7404
(((((((............)))))))).	chr14:31856431-31856682(-)$1	1	144	172	22.0515

#PSSM
g : 0.20	f : 0.12	d : 0.10	e : 0.10	: : 0.08	c : 0.06	[ : 0.05	= : 0.05	" : 0.05	! : 0.03	h : 0.03	i : 0.03	a : 0.01	% : 0.01	F : 0.01	
g : 0.24	f : 0.18	d : 0.12	e : 0.10	c : 0.10	= : 0.05	! : 0.03	[ : 0.03	h : 0.03	i : 0.03	: : 0.01	" : 0.01	% : 0.01	
g : 0.24	f : 0.17	e : 0.15	d : 0.10	! : 0.06	c : 0.06	[ : 0.05	= : 0.05	h : 0.03	: : 0.01	i : 0.01	b : 0.01	
g : 0.22	d : 0.17	f : 0.15	e : 0.13	! : 0.06	c : 0.06	[ : 0.05	= : 0.05	h : 0.03	i : 0.01	b : 0.01	
g : 0.22	d : 0.15	f : 0.15	c : 0.10	e : 0.08	[ : 0.08	= : 0.05	y : 0.05	! : 0.03	h : 0.03	i : 0.01	
g : 0.17	y : 0.17	c : 0.12	d : 0.12	f : 0.10	e : 0.06	b : 0.06	w : 0.05	h : 0.03	! : 0.01	a : 0.01	i : 0.01	= : 0.01	[ : 0.01	
y : 0.18	g : 0.15	c : 0.12	d : 0.10	b : 0.10	w : 0.06	f : 0.06	e : 0.05	v : 0.05	h : 0.03	i : 0.01	= : 0.01	a : 0.01	
u : 0.24	y : 0.20	w : 0.18	v : 0.12	t : 0.08	g : 0.03	b : 0.03	c : 0.03	d : 0.01	x : 0.01	= : 0.01	
u : 0.24	t : 0.22	y : 0.20	w : 0.18	v : 0.12	x : 0.01	
u : 0.24	t : 0.22	y : 0.20	w : 0.18	v : 0.12	x : 0.01	
u : 0.24	t : 0.22	y : 0.20	w : 0.18	v : 0.12	x : 0.01	
u : 0.24	t : 0.22	y : 0.20	w : 0.18	v : 0.12	x : 0.01	
u : 0.24	t : 0.22	y : 0.20	w : 0.18	v : 0.12	x : 0.01	
u : 0.24	t : 0.22	y : 0.20	w : 0.18	v : 0.12	x : 0.01	
u : 0.24	t : 0.22	y : 0.20	w : 0.18	v : 0.12	x : 0.01	
u : 0.24	t : 0.22	y : 0.20	w : 0.18	v : 0.12	x : 0.01	
u : 0.24	t : 0.22	y : 0.20	w : 0.18	v : 0.12	x : 0.01	
u : 0.24	t : 0.22	y : 0.20	w : 0.18	v : 0.12	x : 0.01	
u : 0.24	y : 0.20	w : 0.18	t : 0.13	v : 0.12	g : 0.03	d : 0.01	x : 0.01	f : 0.01	b : 0.01	
y : 0.20	w : 0.13	d : 0.10	b : 0.10	c : 0.08	g : 0.06	v : 0.06	f : 0.06	e : 0.05	h : 0.03	i : 0.01	x : 0.01	= : 0.01	a : 0.01	
y : 0.15	d : 0.13	w : 0.12	c : 0.10	g : 0.10	f : 0.10	b : 0.08	e : 0.06	h : 0.03	] : 0.03	i : 0.01	x : 0.01	= : 0.01	
d : 0.18	g : 0.18	f : 0.15	c : 0.13	e : 0.10	] : 0.06	= : 0.05	y : 0.03	h : 0.03	i : 0.01	x : 0.01	
g : 0.24	d : 0.17	f : 0.15	e : 0.12	c : 0.08	] : 0.05	= : 0.05	h : 0.03	y : 0.01	a : 0.01	i : 0.01	b : 0.01	3 : 0.01	
g : 0.29	f : 0.17	d : 0.12	e : 0.12	c : 0.08	] : 0.06	= : 0.05	h : 0.03	i : 0.01	b : 0.01	3 : 0.01	
g : 0.29	f : 0.15	c : 0.12	e : 0.10	d : 0.08	= : 0.05	] : 0.05	h : 0.03	2 : 0.03	a : 0.01	i : 0.01	3 : 0.01	: : 0.01	
g : 0.27	e : 0.15	f : 0.13	c : 0.08	] : 0.06	2 : 0.05	= : 0.05	d : 0.03	3 : 0.03	h : 0.03	4 : 0.01	i : 0.01	b : 0.01	: : 0.01	
g : 0.24	e : 0.12	f : 0.10	c : 0.08	d : 0.06	2 : 0.06	= : 0.06	: : 0.06	3 : 0.03	a : 0.03	h : 0.03	b : 0.03	4 : 0.01	i : 0.01	
g : 0.20	e : 0.15	] : 0.13	2 : 0.10	= : 0.06	3 : 0.05	d : 0.05	f : 0.05	c : 0.03	: : 0.03	i : 0.03	4 : 0.01	G : 0.01	# : 0.01	b : 0.01	

#score	1332.6660243547485
#seq	58
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_transcript_m3_run1.txt

#BEAR
Dgggggggcccnnnnnccc22gggggg	chr13:25875939-25876182(+)$1	243	188	215	12.6689
=========bbnnnnnbb]========	chr17:79254235-79254478(-)$1	243	161	188	16.0205
eeeee[bb[bbnnnnnbb22bb]eeee	chr19:45572444-45572692(+)$1	248	46	73	12.8830
ggggggg!!bbnnnnnbb333gggggg	chr17:4444572-4444826(-)$1	254	26	53	15.4583
iiiiiii[bboooooobb]iiiiiiii	chr9:117027687-117027932(+)$1	245	168	195	10.9468
:==========nnnnn==========:	chr20:33622754-33622989(-)$1	235	168	195	13.1999
===========oooooo==========	chr17:48797123-48797373(+)$1	250	138	165	11.3507
[dddd!!ddddnnnnndddd]ddddcc	chr19:15354863-15355116(-)$1	253	119	146	12.4249
ffff"""ddddnnnnndddd]ffffff	chr10:45467215-45467464(+)$1	249	129	156	12.3514
ggggggg!!bbnnnnnbb22ggggggg	chr3:48636886-48637135(-)$1	249	79	106	14.9248
========[bbnnnnnbb]========	chr17:74046336-74046580(-)$1	244	194	221	16.1186
ccc[bb!!cccnnnnnccc22bbccc]	chr17:42953132-42953415(-)$1	283	5	32	12.5525
####gggggggooooooggggggg333	chr16:68358669-68358961(+)$1	292	98	125	9.8112
dddd!!eeeeennnnneeeeedddd33	chr17:80055793-80056064(-)$1	271	182	209	12.1611
hhhh!!a[cccnnnnnccc]a22hhhh	chr8:94752932-94753181(-)$1	249	13	40	12.2713
[cccgggggggnnnnnggggggg333c	chr5:172362275-172362557(+)$1	282	21	48	13.7137
dd[ccc[ddddnnnnndddd22ccc]d	chr16:69746730-69747004(-)$1	274	11	38	12.6002
eeeee[bb[bbnnnnnbb22bb]eeee	chr14:23536907-23537133(-)$1	226	10	37	12.8830
===========nnnnn===========	chr9:111644235-111644480(-)$1	245	130	157	15.3689
gggggg"""bbnnnnnbb333gggggg	chr19:34838877-34839128(+)$1	251	44	71	15.4425
ddccc[eeeeennnnneeeee]ccc22	chr16:81685882-81686138(+)$1	256	168	195	12.2732
eeeee[cccbbnnnnnbb]ccceeeee	chr10:32344597-32344846(-)$1	249	161	188	13.5279
fffff!!ddddnnnnnddddffffff]	chrX:14047716-14047976(-)$1	260	146	173	12.0621
c[aeeeee[bbnnnnnbbeeeee333a	chr17:79977529-79977772(-)$1	243	146	173	13.6151
iiiiiiiii[annnnna]iiiiiiiii	chr12:125347923-125348197(-)$1	274	131	158	14.2974
[dddd####bbnnnnnbb4444dddd]	chr1:43396549-43396783(-)$1	234	40	67	13.8251
dddd!!eeeeennnnneeeee]ddddc	chr16:2224264-2224506(+)$1	242	134	161	11.9387
c!!a[ffffffnnnnnffffff]accc	chr8:145113706-145113956(-)$1	250	56	83	11.8829
dddd[a[ddddnnnnndddd]a333dd	chr2:85198587-85198834(+)$1	247	73	100	12.8718
!accc[eeeeennnnneeeee333ccc	chr3:58092528-58092774(+)$1	246	132	159	13.0039
eeeee"""cccnnnnnccc4444eeee	chr5:32234802-32235034(-)$1	232	109	136	13.3209
ggggggg!!bbnnnnnbb22ggggggg	chr1:40027565-40027815(-)$1	250	21	48	14.9248
gg[a[eeeeeannnnna]eeeee]a]g	chr2:131850504-131850737(-)$1	233	74	101	12.6839
cc[ccc!!bboooooobb]ccc]cccg	chr19:6421113-6421356(-)$1	243	84	111	10.2231
ffff[bb[cccnnnnnccc]bbfffff	chr21:46902665-46902891(+)$1	226	26	53	11.6353
"""ccc[a[bbnnnnnbb]a]cccfff	chr10:97416130-97416382(-)$1	252	37	64	14.5022
eeee"""ddddnnnnndddd333eeee	chr14:21462984-21463230(+)$1	246	112	139	13.2273
c"""gggggggnnnnngggggggccc2	chr6:1693219-1693477(-)$1	258	96	123	13.3150
dddd[bb[cccnnnnnccc]bb]dddd	chr16:24741174-24741439(+)$1	265	115	142	11.7519
ccc[dddd[bbnnnnnbb]dddd]ccc	chr10:21827777-21828047(+)$1	270	139	166	13.3502
ggggg[ccc[aooooooa]cccggggg	chr1:57111068-57111360(+)$1	292	181	208	9.9488
!!eeeee!!bbnnnnnbb]eeeee444	chr12:133104502-133104748(+)$1	246	28	55	13.9981
fffff####bbnnnnnbb333ffffff	chr16:70542949-70543206(-)$1	257	22	49	13.7910
""iiiiiiiiinnnnniiiiiiiii33	chr20:55926404-55926687(+)$1	283	235	262	14.6275
hhh####ddddnnnnndddd333hhhh	chr1:165797097-165797349(+)$1	252	200	227	12.3770
iiiiii[a[bbnnnnnbb]a]iiiiii	chr9:96024329-96024567(+)$1	238	143	170	15.6003
eee[gggggggooooooggggggg333	chr2:178077727-178077971(+)$1	244	133	160	9.7928
"""ccc[ddddnnnnndddd]ccc22c	chrX:53661031-53661267(-)$1	236	161	188	12.9727
!==========nnnnn==========2	chr4:2632826-2633073(+)$1	247	72	99	15.2466
eeee[a[ddddnnnnndddd22a]eee	chr4:7069502-7069784(-)$1	282	49	76	12.5602
"""ccc[ddddnnnnndddd]ccc22b	chr17:73840101-73840366(-)$1	265	194	221	12.6876
ffff!!eeeeennnnneeeee22ffff	chr20:43043213-43043482(+)$1	269	161	188	11.8142
===========nnnnn===========	chr20:31595506-31595730(+)$1	224	38	65	15.3689
"bb!!ddddbbnnnnnbb]dddd22bb	chr7:107384550-107384801(+)$1	251	50	77	11.9720
eeeeeccc[bbnnnnnbb]ccc22eee	chr20:62320418-62320652(+)$1	234	32	59	13.4156
d!!dddd!!bbnnnnnbb22dddd]dd	chr19:8045789-8046043(-)$1	254	30	57	12.9524
Hddddccc[bbnnnnnbb]ccc]dddd	chr5:168006080-168006332(-)$1	252	155	182	12.6298
ccc"""eeeeennnnneeeee]ccc33	chr20:23401701-23401990(-)$1	289	215	242	13.0150

#otherMatches

#Seq PSSM
GGGCUGGAGAGAAGCACUUAAUCUAGC	chr13:25875939-25876182(+)$1	243	188	215	12.6689
UCGCUCUUUGCUGGCUGCUAAAGAGUG	chr17:79254235-79254478(-)$1	243	161	188	16.0205
GCAAGAUCCGCAUGAAGUAAGACCUUG	chr19:45572444-45572692(+)$1	248	46	73	12.8830
CCUGGAGCUGCUCAACGUUCUCUUCAG	chr17:4444572-4444826(-)$1	254	26	53	15.4583
CUGGCCUCUAACCCGCUGUGGGCCAGG	chr9:117027687-117027932(+)$1	245	168	195	10.9468
GUAGAAUUGUCCUCAAGGCAAUUCUAG	chr20:33622754-33622989(-)$1	235	168	195	13.1999
UCCUGGCCGCGGCGCGAUGUGGCCAGG	chr17:48797123-48797373(+)$1	250	138	165	11.3507
CUCGGUUUACCCAUGUGGUGUCCGAGC	chr19:15354863-15355116(-)$1	253	119	146	12.4249
ccugccugauaccuguuguuucagggu	chr10:45467215-45467464(+)$1	249	129	156	12.3514
AGGGGGUCUGCUCUUUGUUUAUUUCCU	chr3:48636886-48637135(-)$1	249	79	106	14.9248
UUUUUUUGAGGUGAGGUCGUAAGGGAG	chr17:74046336-74046580(-)$1	244	194	221	16.1186
CUGUGUGCAUCAACAAGAUUGACCGGC	chr17:42953132-42953415(-)$1	283	5	32	12.5525
UCUUGCAUGGGAAAUCCCCUAUGCUCU	chr16:68358669-68358961(+)$1	292	98	125	9.8112
CCGUAUCCAGGGGUCGCCUGGGCGGCC	chr17:80055793-80056064(-)$1	271	182	209	12.1611
GCUGCUGCGACGAAGAGUUCCCUCAGC	chr8:94752932-94753181(-)$1	249	13	40	12.2713
ACAGAUUCAUCACCACGGUGAGUGGCC	chr5:172362275-172362557(+)$1	282	21	48	13.7137
GGCUCCAUGUACUCUCUGCAAGGGAUC	chr16:69746730-69747004(-)$1	274	11	38	12.6002
GACCUUGCUGCUGAAUGUCUGCCAGGU	chr14:23536907-23537133(-)$1	226	10	37	12.8830
AGGGAUUCCAGGUCAGUUGGAAUCUCU	chr9:111644235-111644480(-)$1	245	130	157	15.3689
CCCUUCCCCGAGUUCUUCACAGAAGGG	chr19:34838877-34839128(+)$1	251	44	71	15.4425
AGGCAGAGCUCCGUGUGGGCUGUGUUG	chr16:81685882-81686138(+)$1	256	168	195	12.2732
GGGAGCGGCGGUGUCCCCAGCCCUCCC	chr10:32344597-32344846(-)$1	249	161	188	13.5279
GGCUUCUUCUGAUGCGCAGAGAGCCGA	chrX:14047716-14047976(-)$1	260	146	173	12.0621
AGCACCCAGCCAGAGCGGUGGGUGAGG	chr17:79977529-79977772(-)$1	243	146	173	13.6151
CGUUGCGGUGGGUGGGCGACCGCAGCG	chr12:125347923-125348197(-)$1	274	131	158	14.2974
GGGCCUUUUCGUUAACCGCUUUGGCCG	chr1:43396549-43396783(-)$1	234	40	67	13.8251
GGGCCGUGAGCCAUGAGCUCGAGCCUG	chr16:2224264-2224506(+)$1	242	134	161	11.9387
CCGGGACGCCUGUGAAAGGUGUGUGUG	chr8:145113706-145113956(-)$1	250	56	83	11.8829
gagggcggccgggAAGCGGCGGAGACU	chr2:85198587-85198834(+)$1	247	73	100	12.8718
CCCGAAGUUGCCUUAAGCAGCAUGUUG	chr3:58092528-58092774(+)$1	246	132	159	13.0039
gcauggccccugcgagaggaugacaug	chr5:32234802-32235034(-)$1	232	109	136	13.3209
ACUCUGAGCUGCUGCACAUGUUAGAGU	chr1:40027565-40027815(-)$1	250	21	48	14.9248
CUGGGCUGCGCUUUGUGCCGCGGGCAA	chr2:131850504-131850737(-)$1	233	74	101	12.6839
CCCACACUGCUUUCUUGUCUGUUGGCC	chr19:6421113-6421356(-)$1	243	84	111	10.2231
UGCUCUUUUCCGUACAGGGUGAAGCAG	chr21:46902665-46902891(+)$1	226	26	53	11.6353
CGAGCGGCGGGGAUGGCUAGGCGCCCG	chr10:97416130-97416382(-)$1	252	37	64	14.5022
GCAGCUUCAUGGAUUUCAUGCCUUUGC	chr14:21462984-21463230(+)$1	246	112	139	13.2273
cacagggcauugguaggguguucggaa	chr6:1693219-1693477(-)$1	258	96	123	13.3150
GCGGGAGGGCGCAGGCUGCGUUGCUGC	chr16:24741174-24741439(+)$1	265	115	142	11.7519
UUGUGGGGUUGUCAGUCAUUUCUUCAA	chr10:21827777-21828047(+)$1	270	139	166	13.3502
cucggcggcAGGUGGAGCGGUCCCGGG	chr1:57111068-57111360(+)$1	292	181	208	9.9488
UCCUGCAGAGCUCUGCGCAUGCGGUCU	chr12:133104502-133104748(+)$1	246	28	55	13.9981
GUGGAGAAGGUGGUAGACAAGUUCAUC	chr16:70542949-70543206(-)$1	257	22	49	13.7910
auggccuuaggggucaccuagggccua	chr20:55926404-55926687(+)$1	283	235	262	14.6275
CGCUCCAGCGCCGAGUgcgccccgcgc	chr1:165797097-165797349(+)$1	252	200	227	12.3770
CUAGAGGUCGGGGUUGCUUAGCUCUGG	chr9:96024329-96024567(+)$1	238	143	170	15.6003
UGCGCGGCCUCCGAAGCGAGGCCGAGG	chr2:178077727-178077971(+)$1	244	133	160	9.7928
AUAUGAAGUGACGCCUUCACAUCGAGA	chrX:53661031-53661267(-)$1	236	161	188	12.9727
AAGAGAGAAAACGUGUUUUUCUUUCUG	chr4:2632826-2633073(+)$1	247	72	99	15.2466
GCGCGGCGCAGUCUUCCUGCUUUGGCG	chr4:7069502-7069784(-)$1	282	49	76	12.5602
CCACCCUGGGGAGAGCCCCCUGGGCCA	chr17:73840101-73840366(-)$1	265	194	221	12.6876
GGAUAUAGCCGUGGACUGGCUUGAUUU	chr20:43043213-43043482(+)$1	269	161	188	11.8142
CCUGUCUCAGGAACCACCUGAGGUAGG	chr20:31595506-31595730(+)$1	224	38	65	15.3689
GCCGAAUCAUGGAUCACACUGGUAAGG	chr7:107384550-107384801(+)$1	251	50	77	11.9720
CCGGCGCCACCUUCCUGGCGGUCUGCC	chr20:62320418-62320652(+)$1	234	32	59	13.4156
CGAUCAACACGCUGAACGGCUUGAGGC	chr19:8045789-8046043(-)$1	254	30	57	12.9524
CAAGCCCGUCGCUCCUCGCCGGCGCUU	chr5:168006080-168006332(-)$1	252	155	182	12.6298
GCGCCCCCUGGAGCCCCCAGGACGCCC	chr20:23401701-23401990(-)$1	289	215	242	13.0150

#DB
)((((((((((.....)))..))))))	chr13:25875939-25876182(+)$1	1	188	215	12.6689
(((((((((((.....)).))))))))	chr17:79254235-79254478(-)$1	1	161	188	16.0205
(((((.((.((.....))..)).))))	chr19:45572444-45572692(+)$1	1	46	73	12.8830
(((((((..((.....))...))))))	chr17:4444572-4444826(-)$1	1	26	53	15.4583
(((((((.((......)).))))))))	chr9:117027687-117027932(+)$1	1	168	195	10.9468
.((((((((((.....)))))))))).	chr20:33622754-33622989(-)$1	1	168	195	13.1999
(((((((((((......))))))))))	chr17:48797123-48797373(+)$1	1	138	165	11.3507
.((((..((((.....)))).))))))	chr19:15354863-15355116(-)$1	1	119	146	12.4249
((((...((((.....)))).))))))	chr10:45467215-45467464(+)$1	1	129	156	12.3514
(((((((..((.....))..)))))))	chr3:48636886-48637135(-)$1	1	79	106	14.9248
((((((((.((.....)).))))))))	chr17:74046336-74046580(-)$1	1	194	221	16.1186
(((.((..(((.....)))..))))).	chr17:42953132-42953415(-)$1	1	5	32	12.5525
....(((((((......)))))))...	chr16:68358669-68358961(+)$1	1	98	125	9.8112
((((..(((((.....)))))))))..	chr17:80055793-80056064(-)$1	1	182	209	12.1611
((((..(.(((.....))).)..))))	chr8:94752932-94753181(-)$1	1	13	40	12.2713
.((((((((((.....)))))))...)	chr5:172362275-172362557(+)$1	1	21	48	13.7137
((.(((.((((.....))))..))).)	chr16:69746730-69747004(-)$1	1	11	38	12.6002
(((((.((.((.....))..)).))))	chr14:23536907-23537133(-)$1	1	10	37	12.8830
(((((((((((.....)))))))))))	chr9:111644235-111644480(-)$1	1	130	157	15.3689
((((((...((.....))...))))))	chr19:34838877-34839128(+)$1	1	44	71	15.4425
(((((.(((((.....))))).)))..	chr16:81685882-81686138(+)$1	1	168	195	12.2732
(((((.(((((.....)).))))))))	chr10:32344597-32344846(-)$1	1	161	188	13.5279
(((((..((((.....)))))))))).	chrX:14047716-14047976(-)$1	1	146	173	12.0621
(.((((((.((.....)))))))...)	chr17:79977529-79977772(-)$1	1	146	173	13.6151
(((((((((.(.....).)))))))))	chr12:125347923-125348197(-)$1	1	131	158	14.2974
.((((....((.....))....)))).	chr1:43396549-43396783(-)$1	1	40	67	13.8251
((((..(((((.....))))).)))))	chr16:2224264-2224506(+)$1	1	134	161	11.9387
(..(.((((((.....)))))).))))	chr8:145113706-145113956(-)$1	1	56	83	11.8829
((((.(.((((.....)))).)...))	chr2:85198587-85198834(+)$1	1	73	100	12.8718
.((((.(((((.....)))))...)))	chr3:58092528-58092774(+)$1	1	132	159	13.0039
(((((...(((.....)))....))))	chr5:32234802-32235034(-)$1	1	109	136	13.3209
(((((((..((.....))..)))))))	chr1:40027565-40027815(-)$1	1	21	48	14.9248
((.(.((((((.....).))))).).)	chr2:131850504-131850737(-)$1	1	74	101	12.6839
((.(((..((......)).))).)))(	chr19:6421113-6421356(-)$1	1	84	111	10.2231
((((.((.(((.....))).)))))))	chr21:46902665-46902891(+)$1	1	26	53	11.6353
...(((.(.((.....)).).))))))	chr10:97416130-97416382(-)$1	1	37	64	14.5022
((((...((((.....))))...))))	chr14:21462984-21463230(+)$1	1	112	139	13.2273
(...(((((((.....)))))))))).	chr6:1693219-1693477(-)$1	1	96	123	13.3150
((((.((.(((.....))).)).))))	chr16:24741174-24741439(+)$1	1	115	142	11.7519
(((.((((.((.....)).)))).)))	chr10:21827777-21828047(+)$1	1	139	166	13.3502
(((((.(((.(......).))))))))	chr1:57111068-57111360(+)$1	1	181	208	9.9488
..(((((..((.....)).)))))...	chr12:133104502-133104748(+)$1	1	28	55	13.9981
(((((....((.....))...))))))	chr16:70542949-70543206(-)$1	1	22	49	13.7910
..(((((((((.....)))))))))..	chr20:55926404-55926687(+)$1	1	235	262	14.6275
(((....((((.....))))...))))	chr1:165797097-165797349(+)$1	1	200	227	12.3770
((((((.(.((.....)).).))))))	chr9:96024329-96024567(+)$1	1	143	170	15.6003
(((.(((((((......)))))))...	chr2:178077727-178077971(+)$1	1	133	160	9.7928
...(((.((((.....)))).)))..)	chrX:53661031-53661267(-)$1	1	161	188	12.9727
.((((((((((.....)))))))))).	chr4:2632826-2633073(+)$1	1	72	99	15.2466
((((.(.((((.....))))..).)))	chr4:7069502-7069784(-)$1	1	49	76	12.5602
...(((.((((.....)))).)))..)	chr17:73840101-73840366(-)$1	1	194	221	12.6876
((((..(((((.....)))))..))))	chr20:43043213-43043482(+)$1	1	161	188	11.8142
(((((((((((.....)))))))))))	chr20:31595506-31595730(+)$1	1	38	65	15.3689
.((..((((((.....)).))))..))	chr7:107384550-107384801(+)$1	1	50	77	11.9720
((((((((.((.....)).)))..)))	chr20:62320418-62320652(+)$1	1	32	59	13.4156
(..((((..((.....))..)))).))	chr19:8045789-8046043(-)$1	1	30	57	12.9524
)(((((((.((.....)).))).))))	chr5:168006080-168006332(-)$1	1	155	182	12.6298
(((...(((((.....))))).)))..	chr20:23401701-23401990(-)$1	1	215	242	13.0150

#PSSM
e : 0.13	c : 0.12	d : 0.12	g : 0.10	= : 0.08	f : 0.08	" : 0.08	i : 0.05	[ : 0.05	! : 0.05	h : 0.03	D : 0.01	: : 0.01	# : 0.01	H : 0.01	
d : 0.15	e : 0.13	g : 0.12	= : 0.12	f : 0.08	c : 0.08	" : 0.08	i : 0.05	! : 0.05	h : 0.03	# : 0.01	[ : 0.01	a : 0.01	b : 0.01	
e : 0.15	= : 0.12	d : 0.12	g : 0.10	c : 0.10	f : 0.08	i : 0.06	" : 0.06	[ : 0.05	h : 0.03	! : 0.03	# : 0.01	a : 0.01	b : 0.01	
e : 0.15	d : 0.13	c : 0.13	= : 0.12	g : 0.10	f : 0.08	i : 0.06	[ : 0.05	# : 0.03	a : 0.03	" : 0.03	h : 0.01	! : 0.01	
g : 0.17	= : 0.12	e : 0.12	c : 0.12	[ : 0.10	d : 0.08	! : 0.08	i : 0.06	" : 0.05	f : 0.03	b : 0.01	# : 0.01	
g : 0.15	= : 0.12	c : 0.12	[ : 0.10	! : 0.10	i : 0.06	" : 0.06	b : 0.05	e : 0.05	# : 0.05	d : 0.05	a : 0.03	f : 0.01	
e : 0.15	g : 0.13	= : 0.12	[ : 0.12	b : 0.06	! : 0.06	" : 0.06	c : 0.06	i : 0.05	# : 0.05	d : 0.05	a : 0.01	f : 0.01	
d : 0.20	e : 0.13	= : 0.12	! : 0.12	g : 0.08	[ : 0.06	c : 0.06	b : 0.03	" : 0.03	i : 0.03	# : 0.03	a : 0.03	f : 0.01	
d : 0.18	[ : 0.15	c : 0.13	e : 0.12	= : 0.10	! : 0.08	g : 0.06	b : 0.03	i : 0.03	# : 0.03	" : 0.01	f : 0.01	
b : 0.37	d : 0.17	e : 0.12	c : 0.10	= : 0.08	g : 0.06	[ : 0.03	f : 0.01	i : 0.01	
b : 0.34	d : 0.17	c : 0.10	e : 0.10	= : 0.08	g : 0.06	a : 0.05	o : 0.03	f : 0.01	i : 0.01	
n : 0.89	o : 0.10	
n : 0.89	o : 0.10	
n : 0.89	o : 0.10	
n : 0.89	o : 0.10	
n : 0.89	o : 0.10	
b : 0.37	d : 0.17	c : 0.10	e : 0.10	= : 0.06	o : 0.06	g : 0.03	a : 0.03	f : 0.01	i : 0.01	
b : 0.37	d : 0.17	c : 0.10	e : 0.10	= : 0.08	g : 0.06	] : 0.03	f : 0.01	a : 0.01	i : 0.01	
] : 0.22	d : 0.17	e : 0.13	c : 0.10	2 : 0.08	= : 0.08	g : 0.06	3 : 0.05	i : 0.03	4 : 0.01	f : 0.01	
d : 0.20	e : 0.15	2 : 0.12	= : 0.12	c : 0.08	g : 0.06	3 : 0.05	i : 0.05	] : 0.05	4 : 0.03	a : 0.03	f : 0.01	
e : 0.15	= : 0.12	] : 0.12	g : 0.10	3 : 0.08	c : 0.08	2 : 0.06	b : 0.06	i : 0.05	d : 0.05	f : 0.03	4 : 0.03	a : 0.01	
g : 0.15	c : 0.13	= : 0.12	b : 0.08	d : 0.08	i : 0.06	f : 0.06	2 : 0.06	] : 0.05	e : 0.05	3 : 0.05	4 : 0.03	a : 0.01	
g : 0.17	= : 0.12	d : 0.12	] : 0.10	c : 0.10	i : 0.06	f : 0.06	e : 0.06	3 : 0.06	2 : 0.05	b : 0.01	4 : 0.01	a : 0.01	
c : 0.15	g : 0.13	= : 0.12	d : 0.12	e : 0.10	f : 0.08	i : 0.06	3 : 0.06	] : 0.05	h : 0.03	2 : 0.03	a : 0.01	
c : 0.15	= : 0.12	e : 0.12	g : 0.10	d : 0.10	f : 0.10	3 : 0.08	i : 0.06	2 : 0.05	h : 0.03	a : 0.01	4 : 0.01	] : 0.01	
= : 0.12	e : 0.12	c : 0.12	3 : 0.12	g : 0.10	f : 0.10	d : 0.10	i : 0.05	2 : 0.05	h : 0.03	] : 0.03	4 : 0.01	b : 0.01	
g : 0.13	e : 0.12	c : 0.12	= : 0.08	f : 0.08	3 : 0.08	d : 0.08	i : 0.05	] : 0.05	2 : 0.05	h : 0.03	b : 0.03	: : 0.01	a : 0.01	4 : 0.01	

#score	758.1583031749743
#seq	58
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_transcript_m1_run1.txt

#BEAR
ddddddddoooooodddd]ddd	chr3:185764067-185764304(-)$1	237	172	194	11.6121
========oooooo========	chr22:38203161-38203382(+)$1	221	47	69	12.9854
c[ffffffooooooffffff]c	chr12:6437937-6438199(-)$1	262	56	78	12.1771
===eeeeeooooooeeeee22=	chr2:20401696-20401912(-)$1	216	178	200	12.8589
:gggggggooooooggggggg:	chr20:43954636-43954883(-)$1	247	146	168	10.6525
a[ccccccooooooccc]ccc]	chr1:161192616-161192864(-)$1	248	38	60	12.5152
fff!!cccooooooccc22fff	chr17:80036434-80036714(-)$1	280	127	149	11.8574
ccceeeeeooooooeeeeebb[	chr16:71962370-71962590(+)$1	220	59	81	11.5926
bb[eeeeeooooooeeeee]bb	chr11:65684381-65684674(-)$1	293	28	50	11.8633
ee"""cccooooooccc]eeee	chr10:135176096-135176377(-)$1	281	5	27	12.0568
dbb[ddddoooooodddd]bb]	chr10:15254202-15254507(-)$1	305	40	62	11.7441
ccc[cccooooooccc]ccc]f	chr16:70605968-70606248(+)$1	280	243	265	11.0454
[ccc[cccooooooccc]ccca	chr1:161332464-161332759(+)$1	295	272	294	12.4258
GGffffffooooooffffffbb	chr11:68028741-68029020(-)$1	279	123	145	10.2421
dddddcccooooooccc333dd	chr1:9789073-9789318(-)$1	245	86	108	12.1485
eee[ddddoooooodddd22ee	chr20:25206152-25206439(+)$1	287	247	269	12.4369
ccc"""bboooooobb]ccc33	chr1:116947105-116947407(+)$1	302	60	82	11.8261
f!!eeeeeooooooeeeee444	chrX:102930515-102930776(-)$1	261	232	254	13.2474
f$$$$$bboooooobb4444ff	chr2:43450143-43450430(-)$1	287	234	256	10.3887
!!ffffffooooooffffffbb	chr1:155107102-155107331(+)$1	229	194	216	11.7721
!!ccc[bboooooobbccc22d	chr17:73132169-73132442(-)$1	273	20	42	11.8677
!!ffffffooooooffffffee	chr12:120565138-120565458(-)$1	320	138	160	11.9695
##ffffffooooooffffff44	chr6:128290400-128290709(-)$1	309	264	286	12.3588
=gggggggooooooggggggg>	chr11:62360800-62361013(-)$1	213	55	77	12.3387
eee[ddddooooooddddeeee	chr6:41756943-41757170(+)$1	227	96	118	12.2094
ggggddddoooooodddd333g	chr6:35441349-35441608(-)$1	259	112	134	13.5187
c[aeeeeeooooooeeeee]a3	chr10:102744484-102744780(+)$1	296	140	162	12.9244
ddd[cccooooooccc]ddddc	chr18:56063349-56063648(+)$1	299	87	109	10.0872
e!!eeeeeooooooeeeee22e	chr17:38077736-38078033(-)$1	297	100	122	12.8001
$cccddddoooooodddd333c	chr20:62369585-62369859(+)$1	274	183	205	13.3544
ccc[ddddoooooodddd]ccc	chr16:88781810-88782128(-)$1	318	80	102	12.9107
eeee[cccooooooccceeeee	chr11:2965688-2965929(-)$1	241	188	210	11.8663
fff[ddddooooooddddffff	chrX:23803926-23804181(+)$1	255	195	217	12.2915
b[ffffffooooooffffff]b	chr5:134195129-134195473(+)$1	344	195	217	11.8448
!!a[a[bboooooobb]a]a22	chr11:1774089-1774359(-)$1	270	120	142	11.9488
###ccc[aooooooa]ccc333	chr16:3022757-3023023(-)$1	266	106	128	13.1490
cc[eeeeeooooooeeeee444	chr3:51426499-51426710(+)$1	211	157	179	13.1215
eee[ddddoooooodddd22ee	chr12:108962768-108963087(+)$1	319	84	106	12.4369
[gggggggoooooogggggggb	chr10:54076863-54077141(+)$1	278	174	196	12.3037
dd!!ddddoooooodddd22dd	chr3:194123472-194123731(-)$1	259	172	194	12.4211
ccceeeeeooooooeeeee]cc	chr22:38202677-38202900(+)$1	223	64	86	12.5360
b"""ddddoooooodddd333b	chr5:135398990-135399276(+)$1	286	198	220	13.5346
========oooooo========	chr22:38203081-38203318(+)$1	237	127	149	12.9854
c"""ddddoooooodddd333c	chr20:30156879-30157176(+)$1	297	44	66	13.8670
&&&&ddddoooooodddd4444	chr9:6532722-6532996(-)$1	274	101	123	11.0428
ffffff[aooooooaffffff2	chr12:57606718-57606955(+)$1	237	48	70	11.3664
"bb[ddddoooooodddd333b	chr11:62482346-62482628(-)$1	282	227	249	13.1794
cc[eeeeeooooooeeeee333	chr3:49052863-49053173(+)$1	310	216	238	13.3828
%gggggggooooooggggggg5	chr16:84087306-84087572(-)$1	266	143	165	11.2063
edddd!!aooooooa]dddd]e	chr1:33789672-33789897(-)$1	225	187	209	11.3803
iiiiiiiiooooooiiiiiiii	chr16:18803016-18803246(-)$1	230	64	86	12.3382
ee!!ddddoooooodddd]eee	chr14:24686120-24686356(-)$1	236	188	210	12.5519
b[ffffffooooooffffffbb	chr20:17600232-17600473(-)$1	241	187	209	11.4336
c[ccc[bboooooobb]ccc]c	chr1:228285863-228286160(+)$1	297	197	219	11.7966
iiiiiiiiooooooiiiiiiii	chr17:17715415-17715678(-)$1	263	134	156	12.3382
!ddddcccooooooccc4444d	chr17:18111745-18112021(+)$1	276	100	122	12.5433
a[ffffffooooooffffff]a	chr6:64291089-64291304(+)$1	215	110	132	12.1983
=!!eeeeeooooooeeeee888	chr15:45009765-45010028(+)$1	263	148	170	12.0535

#otherMatches

#Seq PSSM
UAAAGAAGUUUGCUUUUCGUUU	chr3:185764067-185764304(-)$1	237	172	194	11.6121
GUGUGUGUUUGUGUAUAUAUAC	chr22:38203161-38203382(+)$1	221	47	69	12.9854
AUAAGCAguuuuuuuuguuuuu	chr12:6437937-6438199(-)$1	262	56	78	12.1771
CUGUUGGCAGGCUGGCCAGUCC	chr2:20401696-20401912(-)$1	216	178	200	12.8589
AGGAAAUAGUGUGGUGUUUCCA	chr20:43954636-43954883(-)$1	247	146	168	10.6525
AGACAGGCAAAGGAGCCAUGUG	chr1:161192616-161192864(-)$1	248	38	60	12.5152
GGCGCGGGCAGCCACCCAAGCC	chr17:80036434-80036714(-)$1	280	127	149	11.8574
CGUGGAAAUUCUGUUUUCCCUG	chr16:71962370-71962590(+)$1	220	59	81	11.5926
CCUAGAAGGAGAGACUUCUUGG	chr11:65684381-65684674(-)$1	293	28	50	11.8633
AGAACCAGCUGCCCCUGCUUCA	chr10:135176096-135176377(-)$1	281	5	27	12.0568
UGCGUUCUCUCAAAGGAAAGCU	chr10:15254202-15254507(-)$1	305	40	62	11.7441
UGUGUCUUGUUCUGGAGAUGAG	chr16:70605968-70606248(+)$1	280	243	265	11.0454
UGGAGGGGAAUUAGUCUGUCCC	chr1:161332464-161332759(+)$1	295	272	294	12.4258
AGCUGGGGGUUCCACCUCAGGG	chr11:68028741-68029020(-)$1	279	123	145	10.2421
CCUGUAGCUGCUCUGUUUAGAC	chr1:9789073-9789318(-)$1	245	86	108	12.1485
UCUUCCAGUCACAUCUGGCCAG	chr20:25206152-25206439(+)$1	287	247	269	12.4369
CUGGUAGGAAAGCACCGCAGCA	chr1:116947105-116947407(+)$1	302	60	82	11.8261
ACGUUCUAACAUGAUAGAGGCA	chrX:102930515-102930776(-)$1	261	232	254	13.2474
UACUUUGCAAUCAGGCUGAAAU	chr2:43450143-43450430(-)$1	287	234	256	10.3887
UUCUUUGUCUCAAAAUAAAGCA	chr1:155107102-155107331(+)$1	229	194	216	11.7721
AAAAGAGAAACAGAUCCUUGAU	chr17:73132169-73132442(-)$1	273	20	42	11.8677
UGAGCUCUGGUUUGAGAGCUGG	chr12:120565138-120565458(-)$1	320	138	160	11.9695
UUUCAUUAGGUAAAUAAUGGUU	chr6:128290400-128290709(-)$1	309	264	286	12.3588
GGGGCGUGCACUGCCAUGUCuu	chr11:62360800-62361013(-)$1	213	55	77	12.3387
CUCAUGGCACCUCAGCCAGGGG	chr6:41756943-41757170(+)$1	227	96	118	12.2094
UGUGAUGGGUUAUAUCAUAAAU	chr6:35441349-35441608(-)$1	259	112	134	13.5187
CUCCUUGGUCAUUCUCAAGAGU	chr10:102744484-102744780(+)$1	296	140	162	12.9244
AAGAUUUACGAGAGAAACUUCU	chr18:56063349-56063648(+)$1	299	87	109	10.0872
GGGAGGCUGCUGUGGGUUUAAC	chr17:38077736-38078033(-)$1	297	100	122	12.8001
GCCCGCGUCCAGAAGCGCAAAG	chr20:62369585-62369859(+)$1	274	183	205	13.3544
GAGACCAUGAUCAAGUGGACUC	chr16:88781810-88782128(-)$1	318	80	102	12.9107
CAUUUGUAACUGAAUACAGUGU	chr11:2965688-2965929(-)$1	241	188	210	11.8663
GGUCUGUUUAAAGUGGCAAUCU	chrX:23803926-23804181(+)$1	255	195	217	12.2915
CGUGUGCAAUUAUGUGUAUGGG	chr5:134195129-134195473(+)$1	344	195	217	11.8448
CGUUGAGGAUGAGGCCGCUAGA	chr11:1774089-1774359(-)$1	270	120	142	11.9488
CCUGUGUCUCUCCCGUCGCCCU	chr16:3022757-3023023(-)$1	266	106	128	13.1490
UGAUGCUGGCCCUACAGUACCC	chr3:51426499-51426710(+)$1	211	157	179	13.1215
CAGUUUCAUUGUUCUGAAUCCU	chr12:108962768-108963087(+)$1	319	84	106	12.4369
UGAAAAUACUAGCUUAUUUUCU	chr10:54076863-54077141(+)$1	278	174	196	12.3037
CAUCUUUAUAUUUUUAAAAUUG	chr3:194123472-194123731(-)$1	259	172	194	12.4211
CCUCCCUAUUUUCUUAGGGAAG	chr22:38202677-38202900(+)$1	223	64	86	12.5360
AAAUGUGGAAUUGACUGCCUAU	chr5:135398990-135399276(+)$1	286	198	220	13.5346
GUGUGUGUUUGUGUAUAUAUAC	chr22:38203081-38203318(+)$1	237	127	149	12.9854
UAUGAGGAGUCAAAUCCUAAGG	chr20:30156879-30157176(+)$1	297	44	66	13.8670
UGUAAUCUCUGUCAAGGUAAAU	chr9:6532722-6532996(-)$1	274	101	123	11.0428
UCUGGAAGACGUGGCUCUGGGU	chr12:57606718-57606955(+)$1	237	48	70	11.3664
GGCAGCUGGACUGGCAGCCAAG	chr11:62482346-62482628(-)$1	282	227	249	13.1794
GCACAGCUCUCAGAAGCUGCAG	chr3:49052863-49053173(+)$1	310	216	238	13.3828
AUUUCACCAUUGUCGGUGAAGA	chr16:84087306-84087572(-)$1	266	143	165	11.2063
GAGACGGCGCUUCAGAGUUUCC	chr1:33789672-33789897(-)$1	225	187	209	11.3803
UUUUUUAUUAUUUCAUAAGAAA	chr16:18803016-18803246(-)$1	230	64	86	12.3382
AGAGGGCCCUUGCUGGCUACUG	chr14:24686120-24686356(-)$1	236	188	210	12.5519
GUGGCAGGGGUGAGUCUGCCCC	chr20:17600232-17600473(-)$1	241	187	209	11.4336
GCUUUAGAGCUGUGUUGAAAUC	chr1:228285863-228286160(+)$1	297	197	219	11.7966
CUCUCUCCGUCGUGGGAGAGAG	chr17:17715415-17715678(-)$1	263	134	156	12.3382
uccuugguuuuguuGCCUGUUA	chr17:18111745-18112021(+)$1	276	100	122	12.5433
GGUGAUGUGUAUUAAUGUUAGU	chr6:64291089-64291304(+)$1	215	110	132	12.1983
AUAAUGUUAACAUGGACAUGAU	chr15:45009765-45010028(+)$1	263	148	170	12.0535

#DB
((((((((......)))).)))	chr3:185764067-185764304(-)$1	1	172	194	11.6121
((((((((......))))))))	chr22:38203161-38203382(+)$1	1	47	69	12.9854
(.((((((......)))))).)	chr12:6437937-6438199(-)$1	1	56	78	12.1771
((((((((......)))))..)	chr2:20401696-20401912(-)$1	1	178	200	12.8589
.(((((((......))))))).	chr20:43954636-43954883(-)$1	1	146	168	10.6525
(.((((((......))).))).	chr1:161192616-161192864(-)$1	1	38	60	12.5152
(((..(((......)))..)))	chr17:80036434-80036714(-)$1	1	127	149	11.8574
)))(((((......)))))((.	chr16:71962370-71962590(+)$1	1	59	81	11.5926
((.(((((......))))).))	chr11:65684381-65684674(-)$1	1	28	50	11.8633
((...(((......))).))))	chr10:135176096-135176377(-)$1	1	5	27	12.0568
(((.((((......)))).)).	chr10:15254202-15254507(-)$1	1	40	62	11.7441
(((.(((......))).))).)	chr16:70605968-70606248(+)$1	1	243	265	11.0454
.(((.(((......))).))))	chr1:161332464-161332759(+)$1	1	272	294	12.4258
((((((((......))))))((	chr11:68028741-68029020(-)$1	1	123	145	10.2421
((((((((......)))...))	chr1:9789073-9789318(-)$1	1	86	108	12.1485
(((.((((......))))..))	chr20:25206152-25206439(+)$1	1	247	269	12.4369
(((...((......)).)))..	chr1:116947105-116947407(+)$1	1	60	82	11.8261
(..(((((......)))))...	chrX:102930515-102930776(-)$1	1	232	254	13.2474
(.....((......))....))	chr2:43450143-43450430(-)$1	1	234	256	10.3887
..((((((......))))))))	chr1:155107102-155107331(+)$1	1	194	216	11.7721
..(((.((......)))))..)	chr17:73132169-73132442(-)$1	1	20	42	11.8677
..((((((......))))))))	chr12:120565138-120565458(-)$1	1	138	160	11.9695
..((((((......))))))..	chr6:128290400-128290709(-)$1	1	264	286	12.3588
((((((((......))))))).	chr11:62360800-62361013(-)$1	1	55	77	12.3387
(((.((((......))))))))	chr6:41756943-41757170(+)$1	1	96	118	12.2094
((((((((......))))...)	chr6:35441349-35441608(-)$1	1	112	134	13.5187
(.((((((......))))).).	chr10:102744484-102744780(+)$1	1	140	162	12.9244
(((.(((......))).)))))	chr18:56063349-56063648(+)$1	1	87	109	10.0872
(..(((((......)))))..)	chr17:38077736-38078033(-)$1	1	100	122	12.8001
.(((((((......))))...)	chr20:62369585-62369859(+)$1	1	183	205	13.3544
(((.((((......)))).)))	chr16:88781810-88782128(-)$1	1	80	102	12.9107
((((.(((......))))))))	chr11:2965688-2965929(-)$1	1	188	210	11.8663
(((.((((......))))))))	chrX:23803926-23804181(+)$1	1	195	217	12.2915
(.((((((......)))))).)	chr5:134195129-134195473(+)$1	1	195	217	11.8448
..(.(.((......)).).)..	chr11:1774089-1774359(-)$1	1	120	142	11.9488
...(((.(......).)))...	chr16:3022757-3023023(-)$1	1	106	128	13.1490
((.(((((......)))))...	chr3:51426499-51426710(+)$1	1	157	179	13.1215
(((.((((......))))..))	chr12:108962768-108963087(+)$1	1	84	106	12.4369
.(((((((......))))))))	chr10:54076863-54077141(+)$1	1	174	196	12.3037
((..((((......))))..))	chr3:194123472-194123731(-)$1	1	172	194	12.4211
((((((((......))))).))	chr22:38202677-38202900(+)$1	1	64	86	12.5360
(...((((......))))...)	chr5:135398990-135399276(+)$1	1	198	220	13.5346
((((((((......))))))))	chr22:38203081-38203318(+)$1	1	127	149	12.9854
(...((((......))))...)	chr20:30156879-30157176(+)$1	1	44	66	13.8670
....((((......))))....	chr9:6532722-6532996(-)$1	1	101	123	11.0428
((((((.(......))))))).	chr12:57606718-57606955(+)$1	1	48	70	11.3664
.((.((((......))))...)	chr11:62482346-62482628(-)$1	1	227	249	13.1794
((.(((((......)))))...	chr3:49052863-49053173(+)$1	1	216	238	13.3828
.(((((((......))))))).	chr16:84087306-84087572(-)$1	1	143	165	11.2063
(((((..(......).)))).)	chr1:33789672-33789897(-)$1	1	187	209	11.3803
((((((((......))))))))	chr16:18803016-18803246(-)$1	1	64	86	12.3382
((..((((......)))).)))	chr14:24686120-24686356(-)$1	1	188	210	12.5519
(.((((((......))))))))	chr20:17600232-17600473(-)$1	1	187	209	11.4336
(.(((.((......)).))).)	chr1:228285863-228286160(+)$1	1	197	219	11.7966
((((((((......))))))))	chr17:17715415-17715678(-)$1	1	134	156	12.3382
.(((((((......)))....)	chr17:18111745-18112021(+)$1	1	100	122	12.5433
(.((((((......)))))).)	chr6:64291089-64291304(+)$1	1	110	132	12.1983
(..(((((......)))))...	chr15:45009765-45010028(+)$1	1	148	170	12.0535

#PSSM
c : 0.18	e : 0.13	d : 0.08	= : 0.08	f : 0.08	! : 0.08	b : 0.06	a : 0.03	[ : 0.03	# : 0.03	i : 0.03	: : 0.01	G : 0.01	g : 0.01	$ : 0.01	& : 0.01	" : 0.01	% : 0.01	
c : 0.15	[ : 0.12	! : 0.12	d : 0.10	e : 0.10	g : 0.08	= : 0.05	f : 0.05	b : 0.05	# : 0.03	" : 0.03	i : 0.03	G : 0.01	$ : 0.01	& : 0.01	
f : 0.18	c : 0.17	d : 0.08	g : 0.08	! : 0.08	e : 0.06	= : 0.05	[ : 0.05	" : 0.05	b : 0.03	a : 0.03	i : 0.03	$ : 0.01	# : 0.01	& : 0.01	
e : 0.18	[ : 0.17	f : 0.15	c : 0.10	g : 0.08	d : 0.06	" : 0.06	! : 0.05	= : 0.03	i : 0.03	$ : 0.01	& : 0.01	
d : 0.31	e : 0.17	f : 0.15	c : 0.10	g : 0.06	= : 0.03	" : 0.03	[ : 0.03	i : 0.03	! : 0.01	$ : 0.01	a : 0.01	
d : 0.25	e : 0.17	c : 0.17	f : 0.15	g : 0.06	[ : 0.05	= : 0.03	i : 0.03	" : 0.01	$ : 0.01	! : 0.01	
d : 0.25	e : 0.17	c : 0.15	f : 0.13	b : 0.08	g : 0.06	= : 0.03	[ : 0.03	i : 0.03	! : 0.01	
d : 0.25	e : 0.17	f : 0.13	c : 0.12	b : 0.08	g : 0.06	a : 0.05	= : 0.03	o : 0.03	i : 0.03	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 0.96	c : 0.03	
d : 0.25	e : 0.17	c : 0.15	f : 0.13	b : 0.08	g : 0.06	a : 0.05	= : 0.03	i : 0.03	
d : 0.25	e : 0.17	f : 0.15	c : 0.15	b : 0.08	g : 0.06	= : 0.03	] : 0.03	i : 0.03	
d : 0.27	e : 0.17	f : 0.15	c : 0.15	] : 0.08	g : 0.06	= : 0.03	i : 0.03	4 : 0.01	
d : 0.29	e : 0.18	f : 0.15	c : 0.08	g : 0.06	] : 0.05	= : 0.03	4 : 0.03	i : 0.03	2 : 0.01	3 : 0.01	a : 0.01	
e : 0.22	f : 0.17	c : 0.12	3 : 0.10	] : 0.08	g : 0.06	2 : 0.06	4 : 0.05	= : 0.03	d : 0.03	i : 0.03	
f : 0.18	3 : 0.13	2 : 0.10	c : 0.10	4 : 0.08	g : 0.06	e : 0.06	d : 0.05	] : 0.05	= : 0.03	b : 0.03	i : 0.03	a : 0.01	8 : 0.01	
3 : 0.13	e : 0.12	] : 0.10	b : 0.10	4 : 0.08	d : 0.06	2 : 0.06	g : 0.06	c : 0.06	f : 0.06	= : 0.03	i : 0.03	a : 0.01	8 : 0.01	
e : 0.15	b : 0.13	c : 0.12	d : 0.08	f : 0.06	3 : 0.06	4 : 0.06	= : 0.05	] : 0.03	a : 0.03	2 : 0.03	i : 0.03	: : 0.01	[ : 0.01	> : 0.01	g : 0.01	5 : 0.01	8 : 0.01	

#score	706.9089745396076
#seq	58
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_CDS_m2_run1.txt

#BEAR
dd!!ddddddddmmmmdddd]dddd]	chr22:29196261-29196498(-)$1	237	60	86	11.4975
dd"""bb[ddddmmmmdddd]bb444	chr5:73931051-73931319(-)$1	268	60	86	9.3800
d[bb####bboooooobbbb]ddddf	chr2:171573458-171573682(+)$1	224	3	29	6.5520
fff"""ddddooooooddddffffff	chr14:24114354-24114623(+)$1	269	215	241	8.5879
iiiii[ccc[bbmmmmbb]ccciiii	chr2:110372615-110372868(+)$1	253	117	143	7.8376
dd!!ddddddddmmmmdddd]dddd]	chr22:29196303-29196563(-)$1	260	125	151	11.4975
ddd[ddddrrrrrrrrrdddddddd2	chr12:125270551-125270850(-)$1	299	69	95	6.5251
[dddd[dddd[bbnnnnnbb]dddd]	chr16:31102269-31102561(-)$1	292	117	143	6.4334
$$$iiiiiiiiimmmmiiiiiiiii5	chr1:145440943-145441153(+)$1	210	106	132	7.8743
ggg:dddd[cccmmmmccc22dddd:	chr14:35873629-35873919(-)$1	290	254	280	8.0055
ccc!!gggggggmmmmggggggg333	chr22:29196197-29196436(-)$1	239	161	187	8.5806
CC==========mmmm==========	chr3:32932943-32933166(+)$1	223	7	33	7.8909
:ccc"""ddddnnnnndddd333ccc	chr2:171573810-171574077(+)$1	267	2	28	7.4819
ggggggg[ddddmmmmddddgggggg	chr19:18704233-18704490(-)$1	257	211	237	9.7710
b]cccddddcccmmmmccc:::cccc	chr2:217363936-217364174(+)$1	238	104	130	6.2168
ddddddd!!cccmmmmccc22ddddd	chr6:30711634-30711886(-)$1	252	59	85	9.0710
ffggggggg[bbmmmmbbggggggg:	chr4:24585886-24586151(-)$1	265	157	183	7.0164
fffiiiiiiiiinnnnniiiiiiiii	chr21:34918539-34918786(+)$1	247	169	195	6.7735
gg!!dddd[arrrrrrrrra]dddd2	chr16:56643143-56643390(+)$1	247	209	235	6.8191
eee]ddddddddooooooddddFFFF	chr2:235951239-235951550(+)$1	311	144	170	6.5642
ee[ddddaddddmmmmdddd]a]ddd	chr16:18812673-18812938(-)$1	265	111	137	10.1269
eee[ccc[ddddmmmmdddd22ccc]	chr22:29193026-29193287(-)$1	261	137	163	10.0495
bb:iiiiiiiiimmmmiiiiiiiii:	chr22:29194967-29195183(-)$1	216	185	211	7.0886
:dddd[ddddoooooodddd]dddd:	chr1:145441080-145441317(+)$1	237	57	83	8.7372
)))))))ddddammmma]ddddeeee	chr17:48940563-48940813(-)$1	250	47	73	6.2980
fffff[ddddoooooodddd22ffff	chr4:74321305-74321556(+)$1	251	192	218	8.4802
eeeee[dddd[ammmma]ddddeeee	chr2:20647306-20647552(+)$1	246	82	108	9.4518

#otherMatches

#Seq PSSM
CUCCGCCGCCGGAGCCCCGGCCGGCC	chr22:29196261-29196498(-)$1	237	60	86	11.4975
AAAAUGGGGUCUCAAAAGAUGUCUGG	chr5:73931051-73931319(-)$1	268	60	86	9.3800
CAGUACCAGAGCCAGAUCGCCGCGCU	chr2:171573458-171573682(+)$1	224	3	29	6.5520
GCAAUUUGGGGGCUUACUCAUGCUAG	chr14:24114354-24114623(+)$1	269	215	241	8.5879
GGGGGCAGCAGCCCGGGCAGCUCCUC	chr2:110372615-110372868(+)$1	253	117	143	7.8376
CUCCGCCGCCGGAGCCCCGGCCGGCC	chr22:29196303-29196563(-)$1	260	125	151	11.4975
UGCGUCUCUGCCGGAGUGGGAGCGGU	chr12:125270551-125270850(-)$1	299	69	95	6.5251
CAAGCCAGGCUGACCUCAUCUGCUUU	chr16:31102269-31102561(-)$1	292	117	143	6.4334
UGAGGUGAGGAUUGUCAUCUUUACUG	chr1:145440943-145441153(+)$1	210	106	132	7.8743
CUCGGAGCCCUGGAAGCAGCAGCUCA	chr14:35873629-35873919(-)$1	290	254	280	8.0055
ggccggggucuggggccagaucugaa	chr22:29196197-29196436(-)$1	239	161	187	8.5806
GUGUGGCCUUCAACCAUGAGGGCCAC	chr3:32932943-32933166(+)$1	223	7	33	7.8909
AUGCGCAGCGACCACCUCGCGAAGCA	chr2:171573810-171574077(+)$1	267	2	28	7.4819
GCCACCCUCAGCAGGAGCUGGGGUGG	chr19:18704233-18704490(-)$1	257	211	237	9.7710
UAUGGGGCCUCCCUCCGGAAAAUGGU	chr2:217363936-217364174(+)$1	238	104	130	6.2168
CCUGGCGCCCACCCCUGUGUCCGCCG	chr6:30711634-30711886(-)$1	252	59	85	9.0710
ACCUAGGGGAGGAUUACCCCUCUGGC	chr4:24585886-24586151(-)$1	265	157	183	7.0164
CUCAAAAAUUUUCUUUUAAGAUUUUU	chr21:34918539-34918786(+)$1	247	169	195	6.7735
GCUAUAUUCCUUUUUCUAUGAAAUAA	chr16:56643143-56643390(+)$1	247	209	235	6.8191
GUUUGGUAAGUUGCUCAAGACUGUGG	chr2:235951239-235951550(+)$1	311	144	170	6.5642
GAGGUGGCCUGCGCUUGUAGAGACUG	chr16:18812673-18812938(-)$1	265	111	137	10.1269
CUCAUGGCCUUGUAGUUGAGAACCAG	chr22:29193026-29193287(-)$1	261	137	163	10.0495
CUUGGUGAAUGUUCUGAUAUUUGCUU	chr22:29194967-29195183(-)$1	216	185	211	7.0886
CUUUUUGUUCUUACCUGAACUGAAAU	chr1:145441080-145441317(+)$1	237	57	83	8.7372
UCUCCCAUCAACCUCGGCUUGAAUGU	chr17:48940563-48940813(-)$1	250	47	73	6.2980
UUUUCCAAGUUUGCUUAUUUAUGAAA	chr4:74321305-74321556(+)$1	251	192	218	8.4802
CUGGCGCUGUGGGACACGGCGGGCCA	chr2:20647306-20647552(+)$1	246	82	108	9.4518

#DB
((..((((((((....)))).)))).	chr22:29196261-29196498(-)$1	1	60	86	11.4975
((...((.((((....)))).))...	chr5:73931051-73931319(-)$1	1	60	86	9.3800
(.((....((......)))).))))(	chr2:171573458-171573682(+)$1	1	3	29	6.5520
(((...((((......))))))))))	chr14:24114354-24114623(+)$1	1	215	241	8.5879
(((((.(((.((....)).)))))))	chr2:110372615-110372868(+)$1	1	117	143	7.8376
((..((((((((....)))).)))).	chr22:29196303-29196563(-)$1	1	125	151	11.4975
(((.((((.........)))))))).	chr12:125270551-125270850(-)$1	1	69	95	6.5251
.((((.((((.((.....)).)))).	chr16:31102269-31102561(-)$1	1	117	143	6.4334
...(((((((((....))))))))).	chr1:145440943-145441153(+)$1	1	106	132	7.8743
))).((((.(((....)))..)))).	chr14:35873629-35873919(-)$1	1	254	280	8.0055
(((..(((((((....)))))))...	chr22:29196197-29196436(-)$1	1	161	187	8.5806
((((((((((((....))))))))))	chr3:32932943-32933166(+)$1	1	7	33	7.8909
.(((...((((.....))))...)))	chr2:171573810-171574077(+)$1	1	2	28	7.4819
(((((((.((((....))))))))))	chr19:18704233-18704490(-)$1	1	211	237	9.7710
).)))))))(((....)))...((((	chr2:217363936-217364174(+)$1	1	104	130	6.2168
)))((((..(((....)))..))))(	chr6:30711634-30711886(-)$1	1	59	85	9.0710
))(((((((.((....))))))))).	chr4:24585886-24586151(-)$1	1	157	183	7.0164
)))(((((((((.....)))))))))	chr21:34918539-34918786(+)$1	1	169	195	6.7735
((..((((.(.........).)))).	chr16:56643143-56643390(+)$1	1	209	235	6.8191
))).))))((((......))))))))	chr2:235951239-235951550(+)$1	1	144	170	6.5642
((.(((((((((....)))).).)))	chr16:18812673-18812938(-)$1	1	111	137	10.1269
(((.(((.((((....))))..))).	chr22:29193026-29193287(-)$1	1	137	163	10.0495
)).(((((((((....))))))))).	chr22:29194967-29195183(-)$1	1	185	211	7.0886
.((((.((((......)))).)))).	chr1:145441080-145441317(+)$1	1	57	83	8.7372
.......(((((....).))))))))	chr17:48940563-48940813(-)$1	1	47	73	6.2980
(((((.((((......))))..))))	chr4:74321305-74321556(+)$1	1	192	218	8.4802
(((((.((((.(....).))))))))	chr2:20647306-20647552(+)$1	1	82	108	9.4518

#PSSM
d : 0.22	f : 0.14	e : 0.14	g : 0.11	: : 0.07	b : 0.07	i : 0.03	[ : 0.03	$ : 0.03	c : 0.03	C : 0.03	) : 0.03	
d : 0.25	f : 0.14	e : 0.14	g : 0.11	c : 0.07	[ : 0.03	i : 0.03	$ : 0.03	C : 0.03	] : 0.03	b : 0.03	) : 0.03	
d : 0.14	! : 0.11	f : 0.11	g : 0.11	c : 0.11	e : 0.11	" : 0.03	b : 0.03	i : 0.03	$ : 0.03	= : 0.03	[ : 0.03	: : 0.03	) : 0.03	
! : 0.14	i : 0.14	d : 0.14	" : 0.07	[ : 0.07	c : 0.07	g : 0.07	b : 0.03	: : 0.03	= : 0.03	] : 0.03	) : 0.03	f : 0.03	e : 0.03	
d : 0.37	i : 0.14	" : 0.11	g : 0.07	c : 0.07	# : 0.03	! : 0.03	= : 0.03	) : 0.03	f : 0.03	e : 0.03	
d : 0.33	[ : 0.18	i : 0.11	g : 0.11	" : 0.07	b : 0.03	# : 0.03	= : 0.03	c : 0.03	) : 0.03	
d : 0.51	i : 0.11	g : 0.11	c : 0.07	b : 0.03	# : 0.03	= : 0.03	" : 0.03	) : 0.03	
d : 0.51	[ : 0.11	i : 0.11	g : 0.07	# : 0.03	c : 0.03	= : 0.03	! : 0.03	a : 0.03	
d : 0.55	i : 0.11	[ : 0.07	g : 0.07	b : 0.03	c : 0.03	r : 0.03	= : 0.03	! : 0.03	
d : 0.51	i : 0.11	c : 0.11	[ : 0.07	b : 0.03	r : 0.03	g : 0.03	= : 0.03	a : 0.03	
d : 0.33	o : 0.14	i : 0.11	c : 0.11	b : 0.07	r : 0.07	[ : 0.07	g : 0.03	= : 0.03	
d : 0.25	o : 0.14	b : 0.11	i : 0.11	c : 0.11	r : 0.07	a : 0.07	g : 0.03	= : 0.03	n : 0.03	
m : 0.62	o : 0.18	r : 0.07	n : 0.07	b : 0.03	
m : 0.62	o : 0.18	n : 0.11	r : 0.07	
m : 0.62	o : 0.18	n : 0.11	r : 0.07	
m : 0.62	o : 0.18	n : 0.11	r : 0.07	
d : 0.37	b : 0.11	c : 0.11	r : 0.07	n : 0.07	i : 0.07	a : 0.07	g : 0.03	= : 0.03	o : 0.03	
d : 0.40	b : 0.11	i : 0.11	c : 0.11	] : 0.07	n : 0.03	g : 0.03	= : 0.03	r : 0.03	o : 0.03	
d : 0.51	i : 0.11	c : 0.11	b : 0.07	g : 0.07	] : 0.03	= : 0.03	r : 0.03	
d : 0.51	i : 0.11	b : 0.07	2 : 0.07	g : 0.07	c : 0.03	= : 0.03	: : 0.03	a : 0.03	
] : 0.29	d : 0.14	2 : 0.14	i : 0.11	g : 0.11	f : 0.03	c : 0.03	= : 0.03	3 : 0.03	: : 0.03	
d : 0.44	i : 0.11	g : 0.11	2 : 0.07	b : 0.03	f : 0.03	c : 0.03	= : 0.03	3 : 0.03	: : 0.03	a : 0.03	
d : 0.33	i : 0.14	g : 0.11	f : 0.07	c : 0.07	e : 0.07	b : 0.03	= : 0.03	3 : 0.03	F : 0.03	] : 0.03	
d : 0.37	i : 0.14	c : 0.11	f : 0.07	g : 0.07	e : 0.07	4 : 0.03	3 : 0.03	= : 0.03	F : 0.03	
d : 0.37	i : 0.14	c : 0.11	f : 0.07	g : 0.07	e : 0.07	4 : 0.03	3 : 0.03	= : 0.03	F : 0.03	
] : 0.14	: : 0.14	f : 0.11	i : 0.07	2 : 0.07	c : 0.07	d : 0.07	e : 0.07	4 : 0.03	5 : 0.03	3 : 0.03	= : 0.03	g : 0.03	F : 0.03	

#score	220.60970197469254
#seq	27
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_UTR_m3_run2.txt

#BEAR
=====qqqqqqqq======	chr3:123671298-123671654(-)$1	356	305	324	14.5802
eeeeeqqqqqqqqeeeee:	chr4:166261588-166261912(+)$1	324	221	240	13.7491
gggggqqqqqqqqgggggg	chr17:34854950-34855297(-)$1	347	291	310	14.4306
[acccqqqqqqqqccc]a]	chr3:156869387-156869660(-)$1	273	71	90	14.9726
=ddddqqqqqqqqdddd22	chr3:141167196-141167489(+)$1	293	233	252	14.2082
fffffqqqqqqqqffffff	chr10:59951280-59951578(-)$1	298	134	153	13.7534
[ddddqqqqqqqqdddd]b	chr4:110685452-110685683(-)$1	231	169	188	14.1185
%ddddqqqqqqqqdddd]e	chr2:190647534-190647793(-)$1	259	179	198	13.5941
fffffqqqqqqqqffffff	chr12:69666808-69667051(+)$1	243	76	95	13.7534
""cccqqqqqqqqccc333	chr2:114499842-114500123(-)$1	281	100	119	15.3113
fddddqqqqqqqqdddd22	chr13:41835850-41836187(-)$1	337	221	240	14.1056
[ddddqqqqqqqqdddd]g	chr12:67704576-67704897(+)$1	321	106	125	14.3888
[ddddqqqqqqqqdddd]d	chr10:69832720-69832985(-)$1	265	166	185	14.2399
c[cccqqqqqqqqccc]cc	chr12:108936504-108936798(-)$1	294	3	22	14.8624
eeeeeqqqqqqqqeeeeeD	chr18:74072577-74072838(-)$1	261	8	27	13.4259
%ddddqqqqqqqqdddd44	chr17:53470331-53470553(-)$1	222	148	167	13.6971
fffffqqqqqqqqffffff	chr5:112214165-112214462(-)$1	297	70	89	13.7534
eeeeeqqqqqqqqeeeee]	chr2:223806740-223807045(+)$1	305	194	213	14.7047
fffffqqqqqqqqffffff	chr15:93426543-93426814(+)$1	271	50	69	13.7534
gg[bbqqqqqqqqbbgggg	chr12:11090274-11090523(-)$1	249	214	233	13.2775
iii[aqqqqqqqqa]iiii	chr17:74731959-74732197(-)$1	238	188	207	14.2663
eeeeeqqqqqqqqeeeee]	chr2:109400405-109400683(+)$1	278	87	106	14.7047
ggg[aqqqqqqqqa]gggg	chr3:27415232-27415523(-)$1	291	40	59	14.3682
[ddddqqqqqqqqddddee	chrX:56592978-56593323(+)$1	345	220	239	14.2879
b[cccqqqqqqqqccc]bb	chr6:160169411-160169676(+)$1	265	126	145	14.0847
e[cccqqqqqqqqccc]ee	chr6:75964887-75965110(-)$1	223	166	185	15.1607
gggggqqqqqqqqgggggg	chr2:152659137-152659474(-)$1	337	8	27	14.4306
=====qqqqqqqq======	chr2:61237065-61237362(-)$1	297	214	233	14.5802
c[cccqqqqqqqqccc]cc	chr14:32628630-32628897(+)$1	267	103	122	14.8624
!!cccqqqqqqqqccc22g	chr11:43776745-43777090(+)$1	345	64	83	14.9516
ddcccqqqqqqqqccc444	chr1:70696871-70697148(+)$1	277	186	205	14.7439
!!cccqqqqqqqqccc22a	chr10:121341148-121341388(-)$1	240	20	39	14.9347
ee[bbqqqqqqqqbb]eee	chr1:213072403-213072726(+)$1	323	284	303	13.2530
$ddddqqqqqqqqdddd44	chr12:98929198-98929459(+)$1	261	57	76	14.1381
""cccqqqqqqqqccc]ff	chr13:41949760-41950127(+)$1	367	163	182	14.8334
ggg[aqqqqqqqqa]gggg	chr21:40670111-40670449(-)$1	338	169	188	14.3682
gggggqqqqqqqqgggggg	chr10:18970288-18970570(+)$1	282	156	175	14.4306
gggggqqqqqqqqgggggg	chr9:108313590-108313835(+)$1	245	162	181	14.4306
e[cccqqqqqqqqccc]ee	chr14:31086472-31086781(+)$1	309	276	295	15.1607
gggggqqqqqqqqgggggg	chr6:4060853-4061091(+)$1	238	58	77	14.4306
eecccqqqqqqqqcccggg	chr2:38789160-38789473(-)$1	313	82	101	14.9449
gggggqqqqqqqqgggggg	chr7:7283377-7283639(+)$1	262	181	200	14.4306
e[cccqqqqqqqqccceee	chr12:53848223-53848559(+)$1	336	110	129	15.0759
fffffqqqqqqqqffffff	chr12:69663718-69663979(+)$1	261	131	150	13.7534
##cccqqqqqqqqccc22d	chr2:181927797-181928073(+)$1	276	9	28	14.5326
eecccqqqqqqqqccc333	chr11:34120334-34120630(+)$1	296	20	39	15.4119
eeeeeqqqqqqqqeeeee5	chr9:33038920-33039258(+)$1	338	71	90	13.9753
eeeeeqqqqqqqqeeeeee	chr8:16978515-16978809(+)$1	294	207	226	14.5439
fffffqqqqqqqqffffff	chr3:37459634-37459954(+)$1	320	265	284	13.7534
eeeeeqqqqqqqqeeeee4	chr9:102892903-102893169(+)$1	266	174	193	14.6961
fffffqqqqqqqqffffff	chr8:124826554-124826841(+)$1	287	148	167	13.7534
!ddddqqqqqqqqdddd22	chr22:44342503-44342823(+)$1	320	202	221	14.2719
####aqqqqqqqqa4444c	chr14:39651677-39651934(+)$1	257	221	240	13.7051
eeeeeqqqqqqqqeeeee:	chr16:24803033-24803346(+)$1	313	109	128	13.7491
fffffqqqqqqqqffffff	chr22:33258792-33259082(+)$1	290	80	99	13.7534
ddd[aqqqqqqqqa]dddd	chr4:99983715-99984027(+)$1	312	204	223	13.6600
eeeeeqqqqqqqqeeeee4	chr9:102893045-102893351(+)$1	306	32	51	14.6961
d[cccqqqqqqqqccc]dd	chr11:70281280-70281494(+)$1	214	32	51	14.5963
fff[aqqqqqqqqafffff	chr1:21100277-21100579(-)$1	302	218	237	13.9154
fffffqqqqqqqqffffff	chr12:69663670-69663894(+)$1	224	179	198	13.7534
eeeeeqqqqqqqqeeeee3	chr6:163985936-163986176(+)$1	240	58	77	14.8052
e[cccqqqqqqqqccc]ee	chr1:11084917-11085149(+)$1	232	45	64	15.1607
===[aqqqqqqqqa]====	chr1:93826185-93826459(+)$1	274	210	229	14.5058
eeeeeqqqqqqqqeeeee:	chr12:69667894-69668151(+)$1	257	20	39	13.7491
=ddddqqqqqqqqdddddd	chr3:169888898-169889231(-)$1	333	287	306	13.8936
b[cccqqqqqqqqccc333	chr2:101622490-101622709(+)$1	219	174	193	15.1051
eeeeeqqqqqqqqeeeee:	chr10:121340059-121340282(-)$1	223	84	103	13.7491
eeeeeqqqqqqqqeeeee:	chr6:136579019-136579273(-)$1	254	33	52	13.7491
eecccqqqqqqqqccc333	chr3:185634773-185635024(-)$1	251	70	89	15.4119
e[cccqqqqqqqqccceee	chr10:96373201-96373438(+)$1	237	6	25	15.0759
eeeeeqqqqqqqqeeeee3	chr20:52185114-52185376(-)$1	262	189	208	14.8052
e[cccqqqqqqqqccc22e	chr17:56082543-56082789(-)$1	246	197	216	14.9115
!ddddqqqqqqqqddddee	chr21:40669142-40669407(-)$1	265	168	187	14.2821
e[cccqqqqqqqqccc22e	chr17:56082453-56082687(-)$1	234	95	114	14.9115
"ddddqqqqqqqqdddd44	chr4:22415832-22416086(-)$1	254	60	79	14.3559
eeeeeqqqqqqqqeeeee2	chr9:98776195-98776492(+)$1	297	78	97	14.5752
!ddddqqqqqqqqdddd22	chr12:132198247-132198514(+)$1	267	241	260	14.2719

#otherMatches

#Seq PSSM
aaaaaaauauguauuuuuu	chr3:123671298-123671654(-)$1	356	305	324	14.5802
UUUGAAAAAAAUAUCAAAG	chr4:166261588-166261912(+)$1	324	221	240	13.7491
AGCCAUUCGUUCCUGGUUA	chr17:34854950-34855297(-)$1	347	291	310	14.4306
GUCCAUAUCCAUCUGGCAG	chr3:156869387-156869660(-)$1	273	71	90	14.9726
UUGGUUAGAAGAUAUUAUU	chr3:141167196-141167489(+)$1	293	233	252	14.2082
GUACUAUUGUGGGGGUAUA	chr10:59951280-59951578(-)$1	298	134	153	13.7534
cugcugacaacaaagcaug	chr4:110685452-110685683(-)$1	231	169	188	14.1185
CAGUAAAACAACAUGCUAG	chr2:190647534-190647793(-)$1	259	179	198	13.5941
UUUCAUUGUAAGUUGAAAU	chr12:69666808-69667051(+)$1	243	76	95	13.7534
CAAACACACACAGGUUGGG	chr2:114499842-114500123(-)$1	281	100	119	15.3113
UUUAGGAUCUCAGCUAAAC	chr13:41835850-41836187(-)$1	337	221	240	14.1056
UUGGAUAAUGAAUUUUGCA	chr12:67704576-67704897(+)$1	321	106	125	14.3888
GAAUUGAUGAAGAAAUUGU	chr10:69832720-69832985(-)$1	265	166	185	14.2399
UGGCUUCUUUUAUAGUAAA	chr12:108936504-108936798(-)$1	294	3	22	14.8624
cacacacCCUAAAGUGUGG	chr18:74072577-74072838(-)$1	261	8	27	13.4259
UUUAGAUCGGGUGCUGAUA	chr17:53470331-53470553(-)$1	222	148	167	13.6971
AUGUUGCCUUGGAAACAUU	chr5:112214165-112214462(-)$1	297	70	89	13.7534
UAAGAAGUUGAGAUCUUGU	chr2:223806740-223807045(+)$1	305	194	213	14.7047
GGCCCGAGUCGUAGGGUCC	chr15:93426543-93426814(+)$1	271	50	69	13.7534
auagaaaauuauaucaucu	chr12:11090274-11090523(-)$1	249	214	233	13.2775
AUGACUAUUUCUUGCUGUU	chr17:74731959-74732197(-)$1	238	188	207	14.2663
UGUUGUCACUUUUUAAUGU	chr2:109400405-109400683(+)$1	278	87	106	14.7047
ACAGUCUUUCUAAAGUGUG	chr3:27415232-27415523(-)$1	291	40	59	14.3682
AUGCAUUUUGAUUUGUAAU	chrX:56592978-56593323(+)$1	345	220	239	14.2879
GUCCAGCUUGUAAUGGUUA	chr6:160169411-160169676(+)$1	265	126	145	14.0847
UAUUUAACAUUCAGAAAAU	chr6:75964887-75965110(-)$1	223	166	185	15.1607
UUAACCCUCCCUAGUUGAA	chr2:152659137-152659474(-)$1	337	8	27	14.4306
guacaugcacaucuguaua	chr2:61237065-61237362(-)$1	297	214	233	14.5802
GUGUAUAUGUAUUUGCUCA	chr14:32628630-32628897(+)$1	267	103	122	14.8624
gaacaaagacaaauguaaa	chr11:43776745-43777090(+)$1	345	64	83	14.9516
CUACAUAAAUAUUUGUUUU	chr1:70696871-70697148(+)$1	277	186	205	14.7439
UUGAAUUAAGAUUUUCUUU	chr10:121341148-121341388(-)$1	240	20	39	14.9347
uuuauuuuuuuauguuaau	chr1:213072403-213072726(+)$1	323	284	303	13.2530
AUGUGUCCAUCUUUGCAGC	chr12:98929198-98929459(+)$1	261	57	76	14.1381
CCUGUUUAUUCUUACACAG	chr13:41949760-41950127(+)$1	367	163	182	14.8334
UGUGGAAGAAAGGUGAUAA	chr21:40670111-40670449(-)$1	338	169	188	14.3682
UGGAAUGUUCAUCUUUUAG	chr10:18970288-18970570(+)$1	282	156	175	14.4306
gaguaugugaaauugcuuc	chr9:108313590-108313835(+)$1	245	162	181	14.4306
AAGGUAAGUUGACGCCAUA	chr14:31086472-31086781(+)$1	309	276	295	15.1607
UUUAUUAAUGUAUAUAAAC	chr6:4060853-4061091(+)$1	238	58	77	14.4306
UAAGCCCUAUACUGCUGCU	chr2:38789160-38789473(-)$1	313	82	101	14.9449
AUAUAAAUAUGUCUAUAUA	chr7:7283377-7283639(+)$1	262	181	200	14.4306
AACAGAACCUGAGCUGUAU	chr12:53848223-53848559(+)$1	336	110	129	15.0759
UGGAUAUGCCUCAAUCUAA	chr12:69663718-69663979(+)$1	261	131	150	13.7534
UAGUUAUGUUUAAAACGCC	chr2:181927797-181928073(+)$1	276	9	28	14.5326
AUACAGUUUUGAAUGUUAU	chr11:34120334-34120630(+)$1	296	20	39	15.4119
UUGUUUUUGUUUUAAUAAA	chr9:33038920-33039258(+)$1	338	71	90	13.9753
GACUAAUAUAAAAUGGUUU	chr8:16978515-16978809(+)$1	294	207	226	14.5439
uuuggauaaaaaccuaaga	chr3:37459634-37459954(+)$1	320	265	284	13.7534
gccuuggaacacaaaggug	chr9:102892903-102893169(+)$1	266	174	193	14.6961
ACAGAAUUGAACAUUUGUA	chr8:124826554-124826841(+)$1	287	148	167	13.7534
AGUUCGUCCCCAAGAACGA	chr22:44342503-44342823(+)$1	320	202	221	14.2719
UUGUCUUAACUUUGUGUUG	chr14:39651677-39651934(+)$1	257	221	240	13.7051
GUUUCUAUUUUAUGAAAUC	chr16:24803033-24803346(+)$1	313	109	128	13.7491
GUUGCUAAAUUUCGUAGCA	chr22:33258792-33259082(+)$1	290	80	99	13.7534
AAUGUGUAAAGGGAGAUUA	chr4:99983715-99984027(+)$1	312	204	223	13.6600
gccuuggaacacaaaggug	chr9:102893045-102893351(+)$1	306	32	51	14.6961
ACAGAUCAGGCCUUCUUUG	chr11:70281280-70281494(+)$1	214	32	51	14.5963
CUGAGCCCUUAUACCAGUG	chr1:21100277-21100579(-)$1	302	218	237	13.9154
UGGAUAUGCCUCAAUCUAA	chr12:69663670-69663894(+)$1	224	179	198	13.7534
GAUUUAAACUCGAAAAUUC	chr6:163985936-163986176(+)$1	240	58	77	14.8052
AAUUAGAUUAUGAUAAAUA	chr1:11084917-11085149(+)$1	232	45	64	15.1607
GUUCAGUAUAAUAUCAAUU	chr1:93826185-93826459(+)$1	274	210	229	14.5058
AUGAGAAUUAGACUUCAUA	chr12:69667894-69668151(+)$1	257	20	39	13.7491
UUGUAUAUCCAUUUGCACU	chr3:169888898-169889231(-)$1	333	287	306	13.8936
GAUGCUAAAGAAUGCAAAA	chr2:101622490-101622709(+)$1	219	174	193	15.1051
UGGAGUUCUAUAUUUCCAA	chr10:121340059-121340282(-)$1	223	84	103	13.7491
UUUGUGUACUAAGACAAAC	chr6:136579019-136579273(-)$1	254	33	52	13.7491
UUAGAACUAAAAAUCUUAA	chr3:185634773-185635024(-)$1	251	70	89	15.4119
uugcuauaaaauaagcaac	chr10:96373201-96373438(+)$1	237	6	25	15.0759
UCGAGGUCAGCCAUUCGGA	chr20:52185114-52185376(-)$1	262	189	208	14.8052
AAAUUGUAUUUUAAGUGAU	chr17:56082543-56082789(-)$1	246	197	216	14.9115
AGUGGUAAUGAAUCCAUUC	chr21:40669142-40669407(-)$1	265	168	187	14.2821
AAAUUGUAUUUUAAGUGAU	chr17:56082453-56082687(-)$1	234	95	114	14.9115
CAGCAUUUUCAGUUGUUCC	chr4:22415832-22416086(-)$1	254	60	79	14.3559
AUAUUUUGAGUGUAAUAUU	chr9:98776195-98776492(+)$1	297	78	97	14.5752
UAAUAUUUUUGUUUAUUUU	chr12:132198247-132198514(+)$1	267	241	260	14.2719

#DB
(((((........))))))	chr3:123671298-123671654(-)$1	1	305	324	14.5802
(((((........))))).	chr4:166261588-166261912(+)$1	1	221	240	13.7491
(((((........))))))	chr17:34854950-34855297(-)$1	1	291	310	14.4306
.((((........))).).	chr3:156869387-156869660(-)$1	1	71	90	14.9726
(((((........))))..	chr3:141167196-141167489(+)$1	1	233	252	14.2082
(((((........))))))	chr10:59951280-59951578(-)$1	1	134	153	13.7534
.((((........)))).)	chr4:110685452-110685683(-)$1	1	169	188	14.1185
.((((........)))).)	chr2:190647534-190647793(-)$1	1	179	198	13.5941
(((((........))))))	chr12:69666808-69667051(+)$1	1	76	95	13.7534
..(((........)))...	chr2:114499842-114500123(-)$1	1	100	119	15.3113
(((((........))))..	chr13:41835850-41836187(-)$1	1	221	240	14.1056
.((((........)))).)	chr12:67704576-67704897(+)$1	1	106	125	14.3888
.((((........)))).)	chr10:69832720-69832985(-)$1	1	166	185	14.2399
(.(((........))).))	chr12:108936504-108936798(-)$1	1	3	22	14.8624
(((((........)))))(	chr18:74072577-74072838(-)$1	1	8	27	13.4259
.((((........))))..	chr17:53470331-53470553(-)$1	1	148	167	13.6971
(((((........))))))	chr5:112214165-112214462(-)$1	1	70	89	13.7534
(((((........))))).	chr2:223806740-223807045(+)$1	1	194	213	14.7047
(((((........))))))	chr15:93426543-93426814(+)$1	1	50	69	13.7534
((.((........))))))	chr12:11090274-11090523(-)$1	1	214	233	13.2775
(((.(........).))))	chr17:74731959-74732197(-)$1	1	188	207	14.2663
(((((........))))).	chr2:109400405-109400683(+)$1	1	87	106	14.7047
(((.(........).))))	chr3:27415232-27415523(-)$1	1	40	59	14.3682
.((((........))))))	chrX:56592978-56593323(+)$1	1	220	239	14.2879
(.(((........))).))	chr6:160169411-160169676(+)$1	1	126	145	14.0847
(.(((........))).))	chr6:75964887-75965110(-)$1	1	166	185	15.1607
(((((........))))))	chr2:152659137-152659474(-)$1	1	8	27	14.4306
(((((........))))))	chr2:61237065-61237362(-)$1	1	214	233	14.5802
(.(((........))).))	chr14:32628630-32628897(+)$1	1	103	122	14.8624
..(((........)))..)	chr11:43776745-43777090(+)$1	1	64	83	14.9516
(((((........)))...	chr1:70696871-70697148(+)$1	1	186	205	14.7439
..(((........)))..)	chr10:121341148-121341388(-)$1	1	20	39	14.9347
((.((........)).)))	chr1:213072403-213072726(+)$1	1	284	303	13.2530
.((((........))))..	chr12:98929198-98929459(+)$1	1	57	76	14.1381
..(((........))).))	chr13:41949760-41950127(+)$1	1	163	182	14.8334
(((.(........).))))	chr21:40670111-40670449(-)$1	1	169	188	14.3682
(((((........))))))	chr10:18970288-18970570(+)$1	1	156	175	14.4306
(((((........))))))	chr9:108313590-108313835(+)$1	1	162	181	14.4306
(.(((........))).))	chr14:31086472-31086781(+)$1	1	276	295	15.1607
(((((........))))))	chr6:4060853-4061091(+)$1	1	58	77	14.4306
))(((........)))(((	chr2:38789160-38789473(-)$1	1	82	101	14.9449
(((((........))))))	chr7:7283377-7283639(+)$1	1	181	200	14.4306
(.(((........))))))	chr12:53848223-53848559(+)$1	1	110	129	15.0759
(((((........))))))	chr12:69663718-69663979(+)$1	1	131	150	13.7534
..(((........)))..)	chr2:181927797-181928073(+)$1	1	9	28	14.5326
(((((........)))...	chr11:34120334-34120630(+)$1	1	20	39	15.4119
(((((........))))).	chr9:33038920-33039258(+)$1	1	71	90	13.9753
(((((........))))))	chr8:16978515-16978809(+)$1	1	207	226	14.5439
(((((........))))))	chr3:37459634-37459954(+)$1	1	265	284	13.7534
(((((........))))).	chr9:102892903-102893169(+)$1	1	174	193	14.6961
(((((........))))))	chr8:124826554-124826841(+)$1	1	148	167	13.7534
.((((........))))..	chr22:44342503-44342823(+)$1	1	202	221	14.2719
....(........)....)	chr14:39651677-39651934(+)$1	1	221	240	13.7051
(((((........))))).	chr16:24803033-24803346(+)$1	1	109	128	13.7491
(((((........))))))	chr22:33258792-33259082(+)$1	1	80	99	13.7534
(((.(........).))))	chr4:99983715-99984027(+)$1	1	204	223	13.6600
(((((........))))).	chr9:102893045-102893351(+)$1	1	32	51	14.6961
(.(((........))).))	chr11:70281280-70281494(+)$1	1	32	51	14.5963
(((.(........))))))	chr1:21100277-21100579(-)$1	1	218	237	13.9154
(((((........))))))	chr12:69663670-69663894(+)$1	1	179	198	13.7534
(((((........))))).	chr6:163985936-163986176(+)$1	1	58	77	14.8052
(.(((........))).))	chr1:11084917-11085149(+)$1	1	45	64	15.1607
(((.(........).))))	chr1:93826185-93826459(+)$1	1	210	229	14.5058
(((((........))))).	chr12:69667894-69668151(+)$1	1	20	39	13.7491
)((((........))))((	chr3:169888898-169889231(-)$1	1	287	306	13.8936
(.(((........)))...	chr2:101622490-101622709(+)$1	1	174	193	15.1051
(((((........))))).	chr10:121340059-121340282(-)$1	1	84	103	13.7491
(((((........))))).	chr6:136579019-136579273(-)$1	1	33	52	13.7491
(((((........)))...	chr3:185634773-185635024(-)$1	1	70	89	15.4119
(.(((........))))))	chr10:96373201-96373438(+)$1	1	6	25	15.0759
(((((........))))).	chr20:52185114-52185376(-)$1	1	189	208	14.8052
(.(((........)))..)	chr17:56082543-56082789(-)$1	1	197	216	14.9115
.((((........))))))	chr21:40669142-40669407(-)$1	1	168	187	14.2821
(.(((........)))..)	chr17:56082453-56082687(-)$1	1	95	114	14.9115
.((((........))))..	chr4:22415832-22416086(-)$1	1	60	79	14.3559
(((((........))))).	chr9:98776195-98776492(+)$1	1	78	97	14.5752
.((((........))))..	chr12:132198247-132198514(+)$1	1	241	260	14.2719

#PSSM
e : 0.33	f : 0.14	g : 0.11	= : 0.06	[ : 0.06	! : 0.06	" : 0.03	d : 0.03	% : 0.02	c : 0.02	b : 0.02	# : 0.02	i : 0.01	$ : 0.01	
e : 0.24	d : 0.20	[ : 0.15	f : 0.12	g : 0.11	= : 0.03	" : 0.02	! : 0.02	# : 0.02	a : 0.01	i : 0.01	
c : 0.28	e : 0.19	d : 0.19	f : 0.12	g : 0.10	= : 0.03	[ : 0.02	i : 0.01	# : 0.01	
c : 0.28	e : 0.19	d : 0.18	f : 0.11	g : 0.07	[ : 0.07	= : 0.02	b : 0.02	# : 0.01	
c : 0.28	e : 0.19	d : 0.18	f : 0.11	a : 0.09	g : 0.07	= : 0.02	b : 0.02	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.28	e : 0.19	d : 0.18	f : 0.11	a : 0.09	g : 0.07	= : 0.02	b : 0.02	
c : 0.28	e : 0.19	d : 0.18	f : 0.12	g : 0.07	] : 0.06	= : 0.02	b : 0.02	4 : 0.01	
c : 0.28	e : 0.19	d : 0.19	f : 0.12	g : 0.11	= : 0.03	i : 0.01	] : 0.01	4 : 0.01	
e : 0.23	d : 0.19	g : 0.12	f : 0.12	] : 0.11	2 : 0.06	3 : 0.05	= : 0.03	4 : 0.02	i : 0.01	
e : 0.29	f : 0.14	g : 0.12	2 : 0.11	4 : 0.06	] : 0.05	3 : 0.05	= : 0.03	d : 0.03	c : 0.02	a : 0.01	i : 0.01	b : 0.01	
g : 0.15	e : 0.15	f : 0.14	3 : 0.07	4 : 0.07	: : 0.06	2 : 0.06	d : 0.06	= : 0.03	] : 0.03	c : 0.03	b : 0.02	D : 0.01	i : 0.01	a : 0.01	5 : 0.01	

#score	1105.3957466599263
#seq	77
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_transcript_m3_run2.txt

#BEAR
iiiiieeeeeuuuuuuuuuuuueeeee]ii	chr11:122929515-122929777(-)$1	262	27	57	24.7017
==========uuuuuuuuuuuu========	chr1:109642898-109643102(+)$1	204	26	56	26.9886
==========uuuuuuuuuuuu========	chr1:109642851-109643056(+)$1	205	73	103	26.9886
==========uuuuuuuuuuuu========	chr1:109642904-109643108(+)$1	204	20	50	26.9886
iiiiii[ddddssssssssssdddd]iiii	chr9:136217643-136217869(+)$1	226	190	220	19.2181
cciiiiiiiiissssssssssiiiiiiiii	chr11:18426901-18427223(+)$1	322	140	170	18.8046
==========uuuuuuuuuuuu========	chr1:109642828-109643031(+)$1	203	96	126	26.9886
cdddd!!cccssssssssssccc]dddd]c	chr11:62621991-62622267(-)$1	276	35	65	17.3851
ffffff[cccuuuuuuuuuuuucccfffff	chr16:2204953-2205172(-)$1	219	41	71	24.0254
==========uuuuuuuuuuuu========	chr1:109642788-109642995(+)$1	207	136	166	26.9886
++++eeeeevvvvvvvvvvvvveeeee333	chr8:9628338-9628663(+)$1	325	144	174	19.7988
==========uuuuuuuuuuuu========	chr1:109642822-109643028(+)$1	206	102	132	26.9886
=========vvvvvvvvvvvvv========	chr2:234197358-234197623(+)$1	265	223	253	25.3571
eeeee!!ddddtttttttttttdddd]eee	chr9:136217225-136217471(+)$1	246	137	167	22.6595
==========uuuuuuuuuuuu========	chr1:109642908-109643136(+)$1	228	16	46	26.9886
c[dddd[ddddtttttttttttdddddddd	chr1:31440910-31441182(-)$1	272	123	153	21.8238
==========uuuuuuuuuuuu========	chr1:109642819-109643021(+)$1	202	105	135	26.9886
ffffff[ccctttttttttttccc]fffff	chr16:58582317-58582521(-)$1	204	39	69	22.7264
fff!!eeeeevvvvvvvvvvvvveeeee55	chr10:74885763-74886006(-)$1	243	161	191	20.5448
e"""gggggggtttttttttttggggggg3	chr1:76252682-76252887(+)$1	205	101	131	23.5341
[bbeeeeeyyyyyyyyyyyyyyyyeeeee4	chr1:173835344-173835604(-)$1	260	17	47	20.8026
ffffff[ddddssssssssssdddd]ffff	chr17:74557092-74557300(+)$1	208	21	51	17.3499
d[ddddyyyyyyyyyyyyyyyydddd]ddd	chr15:66794259-66794525(-)$1	266	208	238	19.9828
ffffff!!bbxxxxxxxxxxxxxxxbb22f	chr2:203157673-203157956(+)$1	283	193	223	16.8493
cc!!bb!!bbtttttttttttbb]bb22cc	chr7:1480640-1480899(-)$1	259	22	52	21.5152
==========uuuuuuuuuuuu========	chr1:109642795-109643001(+)$1	206	129	159	26.9886
[eeeee[cccssssssssssccc]eeeee]	chr17:27050345-27050609(+)$1	264	204	234	18.0194
cc[bb!!cccuuuuuuuuuuuucccbbccc	chr17:16342797-16343137(+)$1	340	67	97	23.8534
==========uuuuuuuuuuuu========	chr1:109642781-109642988(+)$1	207	143	173	26.9886
====:eeeeewwwwwwwwwwwwwweeeeeC	chr9:136216196-136216426(+)$1	230	86	116	20.5767
bddddcccwwwwwwwwwwwwwwccc4444d	chr20:2637532-2637756(+)$1	224	116	146	21.5409
[iiiiiiiiiwwwwwwwwwwwwwwiiiiii	chr5:138614426-138614643(+)$1	217	5	35	24.2775
ccccbb[cccuuuuuuuuuuuuccc]bbgg	chr6:16266317-16266572(+)$1	255	116	146	23.8687
:bbggggggguuuuuuuuuuuuggggggg]	chr2:27884874-27885155(-)$1	281	6	36	23.3798
==========uuuuuuuuuuuu========	chr1:109642808-109643018(+)$1	210	116	146	26.9886
ffffff[ddddssssssssssdddd]ffff	chr17:74557100-74557335(+)$1	235	13	43	17.3499
ddd####bbvvvvvvvvvvvvvbb333ddd	chr2:234184489-234184709(+)$1	220	169	199	21.1691
ggggg!!eeeeesssssssssseeeee22g	chr11:93454735-93454992(+)$1	257	212	242	18.0662
eeeegggggggtttttttttttggggggg:	chr17:8076655-8076874(-)$1	219	61	91	22.2588
iiiiii[ddddssssssssssdddd]iiii	chr9:136217669-136217896(+)$1	227	164	194	19.2181
eeeee!!cccuuuuuuuuuuuuccceeeee	chr8:48855677-48855989(-)$1	312	58	88	24.4692
hhhhhhh[bbuuuuuuuuuuuubbhhhhhh	chr20:2637167-2637442(+)$1	275	184	214	21.3886
eeeeee[cccuuuuuuuuuuuuccc]eeee	chr11:123172084-123172333(+)$1	249	175	205	24.4209
e"""bb[bbvvvvvvvvvvvvvbb]bb22e	chr6:43746525-43746756(+)$1	231	15	45	21.2921
bbdddd[bbuuuuuuuuuuuubb]dddd]b	chr14:91592721-91592975(+)$1	254	168	198	20.8297
eeeeee"""bbssssssssssbb]eeeee]	chr1:28905172-28905408(-)$1	236	82	112	17.4162
eeccc[dddduuuuuuuuuuuudddd]ccc	chr1:46437733-46438077(+)$1	344	305	335	23.4287
ffffffffffftttttttttttffffff::	chr3:39449882-39450131(+)$1	249	144	174	19.3859
ggggggxxxxxxxxxxxxxxxgggggggii	chr19:50000877-50001159(+)$1	282	1	31	17.1891
==========uuuuuuuuuuuu========	chr1:109642836-109643051(+)$1	215	88	118	26.9886
ggggg!!eeeeesssssssssseeeee22g	chr11:93454810-93455024(+)$1	214	137	167	18.0662
eeeee[ddddwwwwwwwwwwwwwwdddd]e	chr14:95999590-95999825(-)$1	235	151	181	21.7137
e"""gggggggtttttttttttggggggg3	chr1:76252687-76252924(+)$1	237	96	126	23.5341
cccggggggguuuuuuuuuuuugggggggc	chr11:65195656-65195914(+)$1	258	95	125	24.8117
ffffff[bbvvvvvvvvvvvvvbbffffff	chr22:39711117-39711344(-)$1	227	160	190	21.6073
ggggg!!eeeeesssssssssseeeee22g	chr11:93454849-93455055(+)$1	206	98	128	18.0662

#otherMatches

#Seq PSSM
CUCUUGUUUGGCUUACUGAUAACAGAUAAA	chr11:122929515-122929777(-)$1	262	27	57	24.7017
UGCGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642898-109643102(+)$1	204	26	56	26.9886
UGCGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642851-109643056(+)$1	205	73	103	26.9886
UGCGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642904-109643108(+)$1	204	20	50	26.9886
UUGUUUCCCCUCCUGCCUUUUAGGGAAGAC	chr9:136217643-136217869(+)$1	226	190	220	19.2181
GGACUCUCUGUAGCAGAUUUGGCAGAGAGU	chr11:18426901-18427223(+)$1	322	140	170	18.8046
UGCGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642828-109643031(+)$1	203	96	126	26.9886
AACCCGGUACUACAGUUCUUGUAAGGGUGU	chr11:62621991-62622267(-)$1	276	35	65	17.3851
CGGGCUUGGGUUCCCUUAUUCUCCCAGUCU	chr16:2204953-2205172(-)$1	219	41	71	24.0254
UGCGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642788-109642995(+)$1	207	136	166	26.9886
ggaauggagaagguaagaaagacucuaagg	chr8:9628338-9628663(+)$1	325	144	174	19.7988
UGCGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642822-109643028(+)$1	206	102	132	26.9886
AGACCUCUGAUUGAAAAUCCCCCAGGGGUU	chr2:234197358-234197623(+)$1	265	223	253	25.3571
AGCUUUUUAACCCUGAGCAAUUGUUACAAG	chr9:136217225-136217471(+)$1	246	137	167	22.6595
UGCGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642908-109643136(+)$1	228	16	46	26.9886
CCCUCACUUAGACUAUAGUUCACUGAUGAG	chr1:31440910-31441182(-)$1	272	123	153	21.8238
UGCGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642819-109643021(+)$1	202	105	135	26.9886
GUGCAAAAGAAUUCCUGGCUCUCUGUUGCA	chr16:58582317-58582521(-)$1	204	39	69	22.7264
CUACAUGUGAAGAGGAAAAAAaauuauaga	chr10:74885763-74886006(-)$1	243	161	191	20.5448
GAAUCUAAAGUUGAUUAUUACUACUUUAGC	chr1:76252682-76252887(+)$1	205	101	131	23.5341
UGCUUCUCUCCCCUCUUUUCAAAUGAGAAU	chr1:173835344-173835604(-)$1	260	17	47	20.8026
GUGAACAAUUUGAUGAGAAAAAAAUAGUUU	chr17:74557092-74557300(+)$1	208	21	51	17.3499
UGUUUGAUUUUUUUUUUUUCUCCAAAAGUU	chr15:66794259-66794525(-)$1	266	208	238	19.9828
AUUGUUAGAAGUUUGUUAGGGUUAAUUAGA	chr2:203157673-203157956(+)$1	283	193	223	16.8493
GUCCCCCCGCCUCGCCCCACUGCAGGAAAC	chr7:1480640-1480899(-)$1	259	22	52	21.5152
UGCGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642795-109643001(+)$1	206	129	159	26.9886
UGAGGGUGGCAGGGACUAAGGCUUCCUUCU	chr17:27050345-27050609(+)$1	264	204	234	18.0194
UGACGACGUCUAAUGUCUAUCUGACCGCAG	chr17:16342797-16343137(+)$1	340	67	97	23.8534
UGCGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642781-109642988(+)$1	207	143	173	26.9886
AGAGAUGGUGAUGACAUUUUAAACCACCAA	chr9:136216196-136216426(+)$1	230	86	116	20.5767
CCUGAUCCAAUAAAGCCAGAAAGGAGUCCU	chr20:2637532-2637756(+)$1	224	116	146	21.5409
AUCUGAAACAAAUAAUGAGAAAGCUGUUUC	chr5:138614426-138614643(+)$1	217	5	35	24.2775
acucgcugcgaagaaugaagaacgccgcgc	chr6:16266317-16266572(+)$1	255	116	146	23.8687
gggcaaggaucucacauuaucagucuuuga	chr2:27884874-27885155(-)$1	281	6	36	23.3798
UGCGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642808-109643018(+)$1	210	116	146	26.9886
GUGAACAAUUUGAUGAGAAAAAAAUAGUUU	chr17:74557100-74557335(+)$1	235	13	43	17.3499
AAAGAAACCAUAAAAAAGAAAAGGAAAUUU	chr2:234184489-234184709(+)$1	220	169	199	21.1691
AGCCUAAUCAUUUCUGGGCAAUGAUGAAAA	chr11:93454735-93454992(+)$1	257	212	242	18.0662
gcguaaucaggacuugcaacacccugauug	chr17:8076655-8076874(-)$1	219	61	91	22.2588
UUGUUUCCCCUCCUGCCUUUUAGGGAAGAC	chr9:136217669-136217896(+)$1	227	164	194	19.2181
UGCAGCUGGCUUGCGCCUAUUUGCCCUGCA	chr8:48855677-48855989(-)$1	312	58	88	24.4692
GAGGGAACACAGGGUUGGGGUAGUUUCUCU	chr20:2637167-2637442(+)$1	275	184	214	21.3886
AAACUUGACUUAAUGAAUAAAUGGUGGAGU	chr11:123172084-123172333(+)$1	249	175	205	24.4209
uuauuauuGUUGUUAUCCCUAUCAUUAUCA	chr6:43746525-43746756(+)$1	231	15	45	21.2921
CUACACAUUGAAAAAACAAAAAACGUGUCA	chr14:91592721-91592975(+)$1	254	168	198	20.8297
AGGAUGAAACCUAAUUUGAGUGGACAUCCA	chr1:28905172-28905408(-)$1	236	82	112	17.4162
aguUUACUCCAUACCCAGAAGAGGGGAAAA	chr1:46437733-46438077(+)$1	344	305	335	23.4287
AUAGAGUAAACUUGAGAAGAAUGUUUGCAC	chr3:39449882-39450131(+)$1	249	144	174	19.3859
GGGCCUGAAAUACUGAAAGAAGGGUCUUGG	chr19:50000877-50001159(+)$1	282	1	31	17.1891
UGCGCGCUUGGAGCGUGUUAGGCGAGUGCG	chr1:109642836-109643051(+)$1	215	88	118	26.9886
AGCCUAAUCAUUUCUGGGCAAUGAUGAAAA	chr11:93454810-93455024(+)$1	214	137	167	18.0662
ACUUUGAGUAUUUUUUUACAAUGUUGCUGG	chr14:95999590-95999825(-)$1	235	151	181	21.7137
GAAUCUAAAGUUGAUUAUUACUACUUUAGC	chr1:76252687-76252924(+)$1	237	96	126	23.5341
CCUGAGAGCCAGUAUUGGUUGAGGCUCUUC	chr11:65195656-65195914(+)$1	258	95	125	24.8117
CCAGGGGACAACUUCUUAACACGUUCCUGG	chr22:39711117-39711344(-)$1	227	160	190	21.6073
AGCCUAAUCAUUUCUGGGCAAUGAUGAAAA	chr11:93454849-93455055(+)$1	206	98	128	18.0662

#DB
((((((((((............))))).))	chr11:122929515-122929777(-)$1	1	27	57	24.7017
((((((((((............))))))))	chr1:109642898-109643102(+)$1	1	26	56	26.9886
((((((((((............))))))))	chr1:109642851-109643056(+)$1	1	73	103	26.9886
((((((((((............))))))))	chr1:109642904-109643108(+)$1	1	20	50	26.9886
((((((.((((..........)))).))))	chr9:136217643-136217869(+)$1	1	190	220	19.2181
))(((((((((..........)))))))))	chr11:18426901-18427223(+)$1	1	140	170	18.8046
((((((((((............))))))))	chr1:109642828-109643031(+)$1	1	96	126	26.9886
(((((..(((..........))).)))).)	chr11:62621991-62622267(-)$1	1	35	65	17.3851
((((((.(((............))))))))	chr16:2204953-2205172(-)$1	1	41	71	24.0254
((((((((((............))))))))	chr1:109642788-109642995(+)$1	1	136	166	26.9886
....(((((.............)))))...	chr8:9628338-9628663(+)$1	1	144	174	19.7988
((((((((((............))))))))	chr1:109642822-109643028(+)$1	1	102	132	26.9886
(((((((((.............))))))))	chr2:234197358-234197623(+)$1	1	223	253	25.3571
(((((..((((...........)))).)))	chr9:136217225-136217471(+)$1	1	137	167	22.6595
((((((((((............))))))))	chr1:109642908-109643136(+)$1	1	16	46	26.9886
(.((((.((((...........))))))))	chr1:31440910-31441182(-)$1	1	123	153	21.8238
((((((((((............))))))))	chr1:109642819-109643021(+)$1	1	105	135	26.9886
((((((.(((...........))).)))))	chr16:58582317-58582521(-)$1	1	39	69	22.7264
(((..(((((.............)))))..	chr10:74885763-74886006(-)$1	1	161	191	20.5448
(...(((((((...........))))))).	chr1:76252682-76252887(+)$1	1	101	131	23.5341
.(((((((................))))).	chr1:173835344-173835604(-)$1	1	17	47	20.8026
((((((.((((..........)))).))))	chr17:74557092-74557300(+)$1	1	21	51	17.3499
(.((((................)))).)))	chr15:66794259-66794525(-)$1	1	208	238	19.9828
((((((..((...............))..)	chr2:203157673-203157956(+)$1	1	193	223	16.8493
((..((..((...........)).))..))	chr7:1480640-1480899(-)$1	1	22	52	21.5152
((((((((((............))))))))	chr1:109642795-109643001(+)$1	1	129	159	26.9886
.(((((.(((..........))).))))).	chr17:27050345-27050609(+)$1	1	204	234	18.0194
((.((..(((............))))))))	chr17:16342797-16343137(+)$1	1	67	97	23.8534
((((((((((............))))))))	chr1:109642781-109642988(+)$1	1	143	173	26.9886
)))).(((((..............))))))	chr9:136216196-136216426(+)$1	1	86	116	20.5767
((((((((..............)))....)	chr20:2637532-2637756(+)$1	1	116	146	21.5409
.(((((((((..............))))))	chr5:138614426-138614643(+)$1	1	5	35	24.2775
))))((.(((............))).))((	chr6:16266317-16266572(+)$1	1	116	146	23.8687
.(((((((((............))))))).	chr2:27884874-27885155(-)$1	1	6	36	23.3798
((((((((((............))))))))	chr1:109642808-109643018(+)$1	1	116	146	26.9886
((((((.((((..........)))).))))	chr17:74557100-74557335(+)$1	1	13	43	17.3499
(((....((.............))...)))	chr2:234184489-234184709(+)$1	1	169	199	21.1691
(((((..(((((..........)))))..)	chr11:93454735-93454992(+)$1	1	212	242	18.0662
))))(((((((...........))))))).	chr17:8076655-8076874(-)$1	1	61	91	22.2588
((((((.((((..........)))).))))	chr9:136217669-136217896(+)$1	1	164	194	19.2181
(((((..(((............))))))))	chr8:48855677-48855989(-)$1	1	58	88	24.4692
(((((((.((............))))))))	chr20:2637167-2637442(+)$1	1	184	214	21.3886
)(((((.(((............))).))))	chr11:123172084-123172333(+)$1	1	175	205	24.4209
(...((.((.............)).))..)	chr6:43746525-43746756(+)$1	1	15	45	21.2921
((((((.((............)).)))).)	chr14:91592721-91592975(+)$1	1	168	198	20.8297
((((((...((..........)).))))).	chr1:28905172-28905408(-)$1	1	82	112	17.4162
(((((.((((............)))).)))	chr1:46437733-46438077(+)$1	1	305	335	23.4287
)))))((((((...........))))))..	chr3:39449882-39450131(+)$1	1	144	174	19.3859
((((((...............)))))))((	chr19:50000877-50001159(+)$1	1	1	31	17.1891
((((((((((............))))))))	chr1:109642836-109643051(+)$1	1	88	118	26.9886
(((((..(((((..........)))))..)	chr11:93454810-93455024(+)$1	1	137	167	18.0662
(((((.((((..............)))).)	chr14:95999590-95999825(-)$1	1	151	181	21.7137
(...(((((((...........))))))).	chr1:76252687-76252924(+)$1	1	96	126	23.5341
)))(((((((............)))))))(	chr11:65195656-65195914(+)$1	1	95	125	24.8117
((((((.((.............))))))))	chr22:39711117-39711344(-)$1	1	160	190	21.6073
(((((..(((((..........)))))..)	chr11:93454849-93455055(+)$1	1	98	128	18.0662

#PSSM
= : 0.24	e : 0.17	f : 0.14	c : 0.12	g : 0.07	i : 0.05	[ : 0.05	d : 0.03	b : 0.03	+ : 0.01	: : 0.01	h : 0.01	
= : 0.24	f : 0.14	e : 0.14	c : 0.08	i : 0.07	g : 0.07	d : 0.05	" : 0.05	b : 0.05	[ : 0.03	+ : 0.01	h : 0.01	
= : 0.24	f : 0.14	e : 0.12	d : 0.10	i : 0.08	g : 0.07	" : 0.05	c : 0.05	b : 0.03	+ : 0.01	! : 0.01	[ : 0.01	h : 0.01	
= : 0.24	e : 0.14	f : 0.12	g : 0.10	i : 0.08	d : 0.08	" : 0.05	! : 0.03	c : 0.03	+ : 0.01	b : 0.01	# : 0.01	h : 0.01	
= : 0.23	g : 0.16	e : 0.14	f : 0.12	i : 0.08	d : 0.08	b : 0.07	! : 0.01	: : 0.01	# : 0.01	h : 0.01	c : 0.01	
= : 0.23	e : 0.14	! : 0.12	f : 0.12	g : 0.10	i : 0.07	d : 0.05	b : 0.05	[ : 0.03	c : 0.01	# : 0.01	h : 0.01	
= : 0.23	[ : 0.23	! : 0.16	e : 0.08	g : 0.08	i : 0.03	d : 0.03	y : 0.01	c : 0.01	# : 0.01	h : 0.01	" : 0.01	f : 0.01	x : 0.01	
= : 0.23	c : 0.16	e : 0.14	d : 0.14	g : 0.08	b : 0.07	i : 0.03	! : 0.03	y : 0.01	[ : 0.01	" : 0.01	f : 0.01	x : 0.01	
= : 0.23	d : 0.14	c : 0.14	e : 0.12	b : 0.12	g : 0.08	i : 0.03	y : 0.03	w : 0.01	" : 0.01	f : 0.01	x : 0.01	
= : 0.21	d : 0.14	c : 0.14	e : 0.10	v : 0.08	g : 0.08	b : 0.07	i : 0.03	y : 0.03	w : 0.01	u : 0.01	f : 0.01	x : 0.01	
u : 0.41	d : 0.10	v : 0.10	w : 0.07	g : 0.05	e : 0.05	s : 0.03	t : 0.03	y : 0.03	x : 0.03	i : 0.01	b : 0.01	f : 0.01	
u : 0.41	s : 0.14	t : 0.14	v : 0.10	w : 0.07	e : 0.05	y : 0.03	x : 0.03	
u : 0.41	s : 0.19	t : 0.14	v : 0.10	w : 0.07	y : 0.03	x : 0.03	
u : 0.41	s : 0.19	t : 0.14	v : 0.10	w : 0.07	y : 0.03	x : 0.03	
u : 0.41	s : 0.19	t : 0.14	v : 0.10	w : 0.07	y : 0.03	x : 0.03	
u : 0.41	s : 0.19	t : 0.14	v : 0.10	w : 0.07	y : 0.03	x : 0.03	
u : 0.41	s : 0.19	t : 0.14	v : 0.10	w : 0.07	y : 0.03	x : 0.03	
u : 0.41	s : 0.19	t : 0.14	v : 0.10	w : 0.07	y : 0.03	x : 0.03	
u : 0.41	s : 0.19	t : 0.14	v : 0.10	w : 0.07	y : 0.03	x : 0.03	
u : 0.41	s : 0.19	t : 0.14	v : 0.10	w : 0.07	y : 0.03	x : 0.03	
u : 0.41	s : 0.16	t : 0.14	v : 0.10	w : 0.07	c : 0.03	y : 0.03	x : 0.03	
u : 0.39	v : 0.10	t : 0.10	d : 0.07	w : 0.07	c : 0.05	b : 0.05	s : 0.05	y : 0.03	i : 0.01	x : 0.01	g : 0.01	
= : 0.23	c : 0.16	d : 0.14	b : 0.12	g : 0.10	e : 0.08	w : 0.05	i : 0.01	v : 0.01	y : 0.01	x : 0.01	f : 0.01	
= : 0.23	d : 0.14	c : 0.12	e : 0.10	g : 0.10	] : 0.08	b : 0.07	w : 0.05	i : 0.01	y : 0.01	x : 0.01	f : 0.01	
= : 0.23	d : 0.19	e : 0.17	c : 0.10	g : 0.10	i : 0.03	] : 0.03	f : 0.03	x : 0.01	b : 0.01	3 : 0.01	h : 0.01	
= : 0.23	e : 0.19	d : 0.12	] : 0.10	g : 0.10	f : 0.07	b : 0.07	i : 0.03	4 : 0.01	3 : 0.01	h : 0.01	
= : 0.23	e : 0.21	f : 0.10	g : 0.10	i : 0.07	d : 0.07	b : 0.07	] : 0.05	2 : 0.01	4 : 0.01	3 : 0.01	h : 0.01	
= : 0.23	e : 0.14	d : 0.10	f : 0.10	g : 0.10	2 : 0.10	i : 0.07	c : 0.03	] : 0.01	3 : 0.01	4 : 0.01	b : 0.01	h : 0.01	
= : 0.23	e : 0.12	i : 0.10	g : 0.10	f : 0.08	2 : 0.08	] : 0.05	d : 0.05	c : 0.05	3 : 0.01	5 : 0.01	4 : 0.01	h : 0.01	: : 0.01	
= : 0.23	i : 0.10	f : 0.10	c : 0.08	e : 0.08	d : 0.07	g : 0.07	3 : 0.05	] : 0.05	: : 0.03	5 : 0.01	4 : 0.01	C : 0.01	h : 0.01	b : 0.01	

#score	1252.1435270240236
#seq	56
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_CDS_m1_run2.txt

#BEAR
======ffffff[eeeeennnnneeeeeffffff333===	chr13:53261722-53261988(+)$1	266	22	62	13.1521
a[bb[a[ddddccc[aooooooaccc22dddd]abbaahh	chr19:50905347-50905580(+)$1	233	34	74	11.6380
gggg[eeeee####eeeeemmmmeeeee22eeeee]gggg	chr16:22284780-22285059(+)$1	279	135	175	11.6252
ccc####cccccc[ddddmmmmdddd]ccc]ccc4444cc	chr7:158536241-158536522(-)$1	281	222	262	12.5054
fffff"""ccc"""eeeeemmmmeeeee]ccc333fffff	chr1:235387935-235388234(-)$1	299	257	297	13.1268
""ccc[dddda!!eeeeerrrrrrrrreeeee333a]ddd	chr16:2549682-2549946(+)$1	264	62	102	12.4179
gggggg[a[eeeee"""ccclllccc]eeeee]a]ggggg	chr5:179045219-179045471(-)$1	252	141	181	13.9810
eeeee$$$$$dddd!!cccmmmmccc333dddd333eeee	chr8:20068532-20068803(+)$1	271	177	217	11.9294
ddddd####dddd[eeeeemmmmeeeee22dddd22dddd	chr22:50960017-50960291(+)$1	274	165	205	11.4589
===bb"""ccc[a[ddddrrrrrrrrrdddd]accc]bb]	chr11:47194894-47195184(-)$1	290	190	230	11.3242
!!ccc"""ggggggg[ddddlllddddggggggg333ccc	chr2:242181928-242182251(-)$1	323	134	174	14.9849
ffff"""cccccc[cccccclllccc]cccccc]ccc22f	chr3:183465304-183465637(+)$1	333	287	327	12.6829
c[ccc!!dddd[ggggggglllgggggggddddcccccc]	chr22:20106383-20106636(+)$1	253	84	124	12.7050
ccc####ffffff!!ddddllldddd22ffffff22ccc]	chr17:73895623-73895907(-)$1	284	54	94	12.8579
Cggggggg####ccc[bboooooobb]ccc4444gggggg	chr11:65351574-65351841(+)$1	267	32	72	11.3945
""dddd[a!!dddd[ddddoooooodddd]dddd22addd	chr7:127725593-127725874(+)$1	281	143	183	12.0006
cccbb!!dddda[eeeeellleeeee22a]dddd22bb]c	chr19:1123912-1124172(-)$1	260	59	99	11.5836
c"""eeeee"""eeeeemmmmeeeee333eeeee333ccc	chr2:118693012-118693314(-)$1	302	230	270	12.1561
bb[ccc"""ggggggg[bbmmmmbb]ggggggg333ccc]	chr17:33953505-33953782(+)$1	277	208	248	12.6178
ddd!!a[eeeee!!cccnnnnnccc22eeeee]a22dddd	chr12:56501160-56501429(+)$1	269	108	148	11.6287
gggg[a[ccc"""a[ddddllldddd]accca]ggggggg	chr1:203020730-203020998(+)$1	268	81	121	13.2321
ggggg!!bbeeeee!!cccmmmmccc22eeeee]bb4444	chr6:79911301-79911557(-)$1	256	101	141	11.9764
++ffffffccc[eeeeeooooooeeeee]ccc4444ffff	chr16:2867639-2867908(+)$1	269	47	87	12.4993
=============!!cccnnnnnccc==============	chr17:7529791-7530073(-)$1	282	70	110	14.4448
"a[bb[ggggggg!!aooooooa22gggggggbb22a333	chr7:135301687-135301952(+)$1	265	30	70	13.2519
!!ccc####ccc[dddd!!allla22dddd]ccc4444cc	chr13:46718495-46718797(-)$1	302	90	130	13.6702
d!!a"""dddd[ffffffnnnnnffffff]dddd333a22	chr3:9982381-9982643(+)$1	262	84	124	12.5531
:ggggggg!!eeeee!!cccnnnnnccceeeeeggggggg	chr20:49214107-49214404(-)$1	297	243	283	10.6511
ff[ffffff[a[ccc[aooooooaccc]affffff]ffff	chr5:157221846-157222123(-)$1	277	54	94	11.8208
!!ccc!!ccca[eeeeeccclllccc]eeeee]a22ccc2	chr7:98498085-98498381(+)$1	296	246	286	16.1266
"""bb[ccceeeee[a[ccclllccc]aeeeee]ccc]bb	chr19:10659414-10659690(+)$1	276	118	158	12.8378
$$$bb"""dddd[eeeeerrrrrrrrreeeee]dddd333	chr1:36756820-36757103(+)$1	283	204	244	11.6051
eeee[==========rrrrrrrrr==========22eeee	chr21:46276177-46276424(-)$1	247	99	139	12.3166
[ccc[==========ssssssssss==========]ccc]	chr5:78915318-78915573(+)$1	255	77	117	11.2026
!!dddd[bb[a"""eeeeeooooooeeeeeabb]ddddff	chr15:58302858-58303129(-)$1	271	22	62	11.5324
g$$$$$a[bb[ffffffooooooffffff]bb]agggggg	chr6:170059198-170059459(-)$1	261	71	111	11.4411
e!!iiiiiiiiiccc[cccooooooccc]ccc333iiiii	chr3:184037292-184037601(+)$1	309	107	147	14.4826
e!!bb"""ffffffeeeeemmmmeeeee]ffffff]bb22	chr7:151891520-151891795(-)$1	275	68	108	11.4930
gggg$$$$$a[bb!!eeeeellleeeee22bb]a4444gg	chr7:100468040-100468300(+)$1	260	7	47	12.6961
c[dddd[ccc"""ddddnnnnndddd333ccc333dddd]	chr1:229600484-229600733(-)$1	249	160	200	12.0937
####ggggggg!!gggggggnnnnnggggggg]ggggggg	chr3:37360409-37360674(+)$1	265	73	113	11.8222
c[eeeeeccc!!eeeeeooooooeeeee22ccc]eeeee]	chr7:128035181-128035469(-)$1	288	201	241	13.2561
[bbccc[ccc[eeeee[cccnnnnnccc22eeeee]ccc]	chr5:175956062-175956280(-)$1	218	148	188	11.6600
c:ccc####eeeeeddddnnnnndddd22eeeee22ccc:	chr3:121361685-121361998(-)$1	313	267	307	11.7624
===="""ccceeeee[aooooooa]eeeee]ccc22====	chr17:45696949-45697297(+)$1	348	191	231	16.1908
d"""eeeee!!iiiiiiiiinnnnniiiiiiiii22eeee	chr16:30016380-30016695(+)$1	315	219	259	11.3592
"""============[cccmmmmccc]============d	chr1:46032389-46032658(+)$1	269	36	76	14.2117
cc!!a[ddddeeeeeooooooeeeee22dddd]a22ccc3	chr3:183491265-183491555(+)$1	290	49	89	12.0695
[a[bb[eeeee[eeeeeooooooeeeee]eeeee]bb]a]	chr17:41103796-41104068(-)$1	272	86	126	13.7394
$$$ccc[ccc[gggggggooooooggggggg]ccc]ccc>	chr2:118860610-118860890(+)$1	280	96	136	13.8484
ggggg!!ccc[a[ccc[bbnnnnnbbccc]accc]ggggg	chr7:129825062-129825364(-)$1	302	95	135	11.9863
eeee####eeeee[cccooooooccc22eeeee]eeeeee	chr5:90671194-90671435(-)$1	241	60	100	13.2579
eeeee####gggggggoooooogggggggeeeee333eee	chr1:19513664-19513940(-)$1	276	17	57	13.6459
cccccc!!ccc^^^^^^^^^^^^^^^^^^^ccc333ccc]	chr8:92085909-92086192(+)$1	283	193	233	10.4679
eeccc$$$$$bb!!aeeeeellleeeee]a22bb4444cc	chr16:22269662-22269934(+)$1	272	145	185	11.5702
======"""eeeee"""ccclllccceeeee22=======	chr1:156108716-156108973(+)$1	257	95	135	14.2145
####ggggggg[eeeeeooooooeeeee]gggggggccc2	chr10:102013177-102013443(-)$1	266	177	217	14.7920
gggg[a[ccc!!ccc[aooooooaccccccaggggggg::	chr19:12841770-12842032(-)$1	262	215	255	12.5793
h!!eeeee####ddddoooooodddd]eeeee]hhhhhhh	chr1:19565694-19565925(-)$1	231	77	117	10.8317
======[ccccccggggggglllggggggg>>>>>>>>>>	chr9:114136184-114136470(-)$1	286	68	108	11.2601

#otherMatches

#Seq PSSM
GAGUUUAUAUUGAGCUGUAUAUAAUAGCCAAUAUUUGGGG	chr13:53261722-53261988(+)$1	266	22	62	13.1521
GUGAGUGCUCCCCCAGGAUCAGCGGGUUGGAGGGUCCCCU	chr19:50905347-50905580(+)$1	233	34	74	11.6380
UUCUUUCUCCCUCUUUGGUUUGUAUCAACAGGAGACAGAA	chr16:22284780-22285059(+)$1	279	135	175	11.6252
GAGGACAUGACUGUGAGCCAGCGCUUCCAGCUCAGUAACU	chr7:158536241-158536522(-)$1	281	222	262	12.5054
ACAGAUAAUUAGUAUCUUAAAAAUAAGAAUAGAAUUUUGU	chr1:235387935-235388234(-)$1	299	257	297	13.1268
CUGUGACCUGGGACAGGCCCGUCAGUAGUCUGGAGCACAG	chr16:2549682-2549946(+)$1	264	62	102	12.4179
CUUUAGGUAUAUUGAAAUCUUUAAGAGCAGUAGAGCUGAA	chr5:179045219-179045471(-)$1	252	141	181	13.9810
UCGAAUCUACCCAGAGGAAAUGAUUCAGACUGGCAUUUCG	chr8:20068532-20068803(+)$1	271	177	217	11.9294
UGUGCCCCCCUGUGUGGAGGAGGCUCUGGGACAGAAGCGC	chr22:50960017-50960291(+)$1	274	165	205	11.4589
CACCCAAAGCCUCACUGGGUCAGUAUGCCAGCGGGCAGGC	chr11:47194894-47195184(-)$1	290	190	230	11.3242
CUCCUGCCCUGUGUUUGGUUUCAGGCCAACAUAGCCGAGG	chr2:242181928-242182251(-)$1	323	134	174	14.9849
ggucuucgcucugucacccaggcuggagugcaguggcaug	chr3:183465304-183465637(+)$1	333	287	327	12.6829
CACUGGUUGGGCUCUGGUUGUGAGCCAGAUCCAUAGGCCA	chr22:20106383-20106636(+)$1	253	84	124	12.7050
CAGGGAGUCAUGUCAGCCUCUAGGGUGUGCAUGGAGCUGA	chr17:73895623-73895907(-)$1	284	54	94	12.8579
CAAGCUCAGAGAUGGGGCUGUUGUGUGCCAGGCAUGAGCU	chr11:65351574-65351841(+)$1	267	32	72	11.3945
GAGCUCUGCCCAUGAUGCCAUUGCAGGUACCGUGCCCGAG	chr7:127725593-127725874(+)$1	281	143	183	12.0006
UGGGGAGCCUCCCUCUGGUGGCCAGGCUGCGAGGGCCCAC	chr19:1123912-1124172(-)$1	260	59	99	11.5836
AAAGUAGAAUGAAGGUCAGAUGGCUUCUUUUCUGUAAUGC	chr2:118693012-118693314(-)$1	302	230	270	12.1561
UGAAGUUUCUAGAAUUGUUACCUAAGGAUUCUGACUACUA	chr17:33953505-33953782(+)$1	277	208	248	12.6178
UCCAGGAAGAUACUGAUUGCAUGUCCUUAUCUACAGGGGA	chr12:56501160-56501429(+)$1	269	108	148	11.6287
cccuugacucuuUGGGCCCACUGGGUGUGAGCUGGGGGUC	chr1:203020730-203020998(+)$1	268	81	121	13.2321
UUCUUUUUCACAGGCACAGAAAACUGAAUCUGUAGAUAAC	chr6:79911301-79911557(-)$1	256	101	141	11.9764
GGGACCCUGGGUGGGCAAAAACGUGCUUUCCCGGACGGGG	chr16:2867639-2867908(+)$1	269	47	87	12.4993
GUUGAAAGAGGGAGUGAGAAAACCUUUUUCUUUUUUGACC	chr17:7529791-7530073(-)$1	282	70	110	14.4448
UCUUGACUAUUUUAUGCUCUUUCUGAAAAUAGCACUGUCU	chr7:135301687-135301952(+)$1	265	30	70	13.2519
AAAAGCUAUGUUUUCUUCGGUCCCAAAAGAUAACCCAUCU	chr13:46718495-46718797(-)$1	302	90	130	13.6702
ggagaAAAUAUUAUCUUGUAUAUCAAGGUUGUAUAGAUGA	chr3:9982381-9982643(+)$1	262	84	124	12.5531
CGCCCUGGAUGAGCUGUCCCUGUUUGGGGGCUCCCAGGGU	chr20:49214107-49214404(-)$1	297	243	283	10.6511
UACUUUUUGUGUGGCACUAAAAUGGCCUCCAGAAAUUAUU	chr5:157221846-157222123(-)$1	277	54	94	11.8208
AGGAUUUACCAGGUAAGGUCAUUGACUUUUAUGucagguu	chr7:98498085-98498381(+)$1	296	246	286	16.1266
CUUGAAGGGUGGCAAGAAGGUGACCUGCUGCUGUCCCGUC	chr19:10659414-10659690(+)$1	276	118	158	12.8378
AUAGCAACAAAAAGGAACAGGAGUUUCGUUCCAUUUUCCA	chr1:36756820-36757103(+)$1	283	204	244	11.6051
GUUCUGUGUCUGGGGCGGCCCUAACUCCAGGUGCUUGAAU	chr21:46276177-46276424(-)$1	247	99	139	12.3166
GCUAUGAUAAUUUAAUAUUGUCUUUUUAAAUUAUCCUAGG	chr5:78915318-78915573(+)$1	255	77	117	11.2026
UCAUAGUUGACCAGGUAUGCAACUCCAUAUGCAUUUGUAU	chr15:58302858-58303129(-)$1	271	22	62	11.5324
GCUGUUAGGAUACGUGUGCGGAUGCACGUUUCGUCUGCUU	chr6:170059198-170059459(-)$1	261	71	111	11.4411
GGAGGUGUCAGGCAGGCAUUAGUAUAUGGUUGGGCCCUGA	chr3:184037292-184037601(+)$1	309	107	147	14.4826
AGGUAAAUAGUGCUAUACAUUUUUGUGUGAGUAUUCUGAA	chr7:151891520-151891795(-)$1	275	68	108	11.4930
UCACGACAUGAACCACCCGCCCAGCGGGGAGUACUUUGGU	chr7:100468040-100468300(+)$1	260	7	47	12.6961
GAUUGUCCUGAAGGUGGCUUAUCCACAGGCAGACAGCAAC	chr1:229600484-229600733(-)$1	249	160	200	12.0937
GUAUUAUUUAGUUGUGGAGUUACAUAUUUUAUUCUGGGUG	chr3:37360409-37360674(+)$1	265	73	113	11.8222
GCUUUGGUGUGCCCAUCAUAGCCGAUGGCGGCAUCCAGAC	chr7:128035181-128035469(-)$1	288	201	241	13.2561
GGGGCUGGUGAGAGCAACGCCUGACGUGCAUGUUCCCACA	chr5:175956062-175956280(-)$1	218	148	188	11.6600
CAGGCUCUUCUGCUAAGACUUUAUCUUCCAGCAGUUGUCA	chr3:121361685-121361998(-)$1	313	267	307	11.7624
AGAGGUUAAGGUAAGGAAAAUACUGUUUACUCUUCACUUU	chr17:45696949-45697297(+)$1	348	191	231	16.1908
GUUCUGGGGCUGGGGUCGGGACAACCCUGACCCCCCUCCC	chr16:30016380-30016695(+)$1	315	219	259	11.3592
CCCAGCUGGAGGGAAUCUGGCAUCAGCUUCCUUCCAGUUC	chr1:46032389-46032658(+)$1	269	36	76	14.2117
GCUUGUUAGUGUUCUAAAAUAAGAAUUUAUUGCCUUGUAU	chr3:183491265-183491555(+)$1	290	49	89	12.0695
GAGUGCAGGAUUUGGGGGGUUGACUCUACAUCCUUCAGUA	chr17:41103796-41104068(-)$1	272	86	126	13.7394
CUUUUAGCUUAAGUGUUGCCAGUACAACAUUGGAGGUAAC	chr2:118860610-118860890(+)$1	280	96	136	13.8484
UGUUAACUGUAGAUGUCAGAAUUGCUACAACACACUGAUA	chr7:129825062-129825364(-)$1	302	95	135	11.9863
GCCCAAUAUCCUUAAGUGCCAAAAUUGAAAGGAAGGGCUA	chr5:90671194-90671435(-)$1	241	60	100	13.2579
AUCCCCAUGGUAAUCAGCAUAUUGAUUGCGGGAUCCACUU	chr1:19513664-19513940(-)$1	276	17	57	13.6459
UCAGCCACCUCGGAUAUCAAAAGCACAAAAGAGACGGGUA	chr8:92085909-92086192(+)$1	283	193	233	10.4679
UCCCUAGCAAUCAGCCAAGACCAUCUUGAGAGGAACAGAG	chr16:22269662-22269934(+)$1	272	145	185	11.5702
GGGAGGGUCUGGGUCCAGGCCCUGCUGCUCACACCUCUCU	chr1:156108716-156108973(+)$1	257	95	135	14.2145
GCUUUGGUUUCCAGUCUUGCCACGGGCUUGAAACCAAGAU	chr10:102013177-102013443(-)$1	266	177	217	14.7920
CCAGUGCGGUGACGAUGAUAAAACUCGGCCCCUGGUGAAA	chr19:12841770-12842032(-)$1	262	215	255	12.5793
AGCUGGCUAGUACUGGUCCCAUUUAGGAGCUGAUGCCUUG	chr1:19565694-19565925(-)$1	231	77	117	10.8317
AAAUUUUUGGCACCUAAGCCAAUGGUUUGGUAGGUAGAAC	chr9:114136184-114136470(-)$1	286	68	108	11.2601

#DB
((((((((((((.(((((.....)))))))))))...)))	chr13:53261722-53261988(+)$1	1	22	62	13.1521
(.((.(.(((((((.(......))))..)))).)))))))	chr19:50905347-50905580(+)$1	1	34	74	11.6380
((((.(((((....(((((....)))))..))))).))))	chr16:22284780-22285059(+)$1	1	135	175	11.6252
(((....((((((.((((....)))).))).)))....))	chr7:158536241-158536522(-)$1	1	222	262	12.5054
(((((...(((...(((((....))))).)))...)))))	chr1:235387935-235388234(-)$1	1	257	297	13.1268
..(((.(((((..(((((.........)))))...).)))	chr16:2549682-2549946(+)$1	1	62	102	12.4179
((((((.(.(((((...(((...))).))))).).)))))	chr5:179045219-179045471(-)$1	1	141	181	13.9810
(((((.....((((..(((....)))...))))...))))	chr8:20068532-20068803(+)$1	1	177	217	11.9294
(((((....((((.(((((....)))))..))))..))))	chr22:50960017-50960291(+)$1	1	165	205	11.4589
(((((...(((.(.((((.........)))).)))).)).	chr11:47194894-47195184(-)$1	1	190	230	11.3242
..(((...(((((((.((((...)))))))))))...)))	chr2:242181928-242182251(-)$1	1	134	174	14.9849
((((...((((((.((((((...))).)))))).)))..)	chr3:183465304-183465637(+)$1	1	287	327	12.6829
(.(((..((((.(((((((...))))))))))))))))).	chr22:20106383-20106636(+)$1	1	84	124	12.7050
(((....((((((..((((...))))..))))))..))).	chr17:73895623-73895907(-)$1	1	54	94	12.8579
((((((((....(((.((......)).)))....))))))	chr11:65351574-65351841(+)$1	1	32	72	11.3945
..((((.(..((((.((((......)))).))))..))))	chr7:127725593-127725874(+)$1	1	143	183	12.0006
(((((..(((((.(((((...)))))..).))))..)).)	chr19:1123912-1124172(-)$1	1	59	99	11.5836
(...(((((...(((((....)))))...)))))...)))	chr2:118693012-118693314(-)$1	1	230	270	12.1561
((.(((...(((((((.((....)).)))))))...))).	chr17:33953505-33953782(+)$1	1	208	248	12.6178
(((..(.(((((..(((.....)))..))))).)..))))	chr12:56501160-56501429(+)$1	1	108	148	11.6287
((((.(.(((...(.((((...)))).))))).)))))))	chr1:203020730-203020998(+)$1	1	81	121	13.2321
(((((..(((((((..(((....)))..))))).))....	chr6:79911301-79911557(-)$1	1	101	141	11.9764
..(((((((((.(((((......))))).)))....))))	chr16:2867639-2867908(+)$1	1	47	87	12.4993
(((((((((((((..(((.....)))))))))))))))))	chr17:7529791-7530073(-)$1	1	70	110	14.4448
.(.((.(((((((..(......)..)))))))))..)...	chr7:135301687-135301952(+)$1	1	30	70	13.2519
..(((....(((.((((..(...)..)))).)))....))	chr13:46718495-46718797(-)$1	1	90	130	13.6702
(..(...((((.((((((.....)))))).))))...)..	chr3:9982381-9982643(+)$1	1	84	124	12.5531
.(((((((..(((((..(((.....)))))))))))))))	chr20:49214107-49214404(-)$1	1	243	283	10.6511
((.((((((.(.(((.(......)))).))))))).))))	chr5:157221846-157222123(-)$1	1	54	94	11.8208
..(((..((((.((((((((...))).))))).)..))).	chr7:98498085-98498381(+)$1	1	246	286	16.1266
...((.((((((((.(.(((...))).)))))).))).))	chr19:10659414-10659690(+)$1	1	118	158	12.8378
...((...((((.(((((.........))))).))))...	chr1:36756820-36757103(+)$1	1	204	244	11.6051
((((.((((((((((.........))))))))))..))))	chr21:46276177-46276424(-)$1	1	99	139	12.3166
.(((.((((((((((..........)))))))))).))).	chr5:78915318-78915573(+)$1	1	77	117	11.2026
..((((.((.(...(((((......)))))))).))))))	chr15:58302858-58303129(-)$1	1	22	62	11.5324
(.....(.((.((((((......)))))).)).)))))))	chr6:170059198-170059459(-)$1	1	71	111	11.4411
(..((((((((((((.(((......))).)))...)))))	chr3:184037292-184037601(+)$1	1	107	147	14.4826
(..((...(((((((((((....))))).)))))).))..	chr7:151891520-151891795(-)$1	1	68	108	11.4930
((((.....(.((..(((((...)))))..)).)....))	chr7:100468040-100468300(+)$1	1	7	47	12.6961
(.((((.(((...((((.....))))...)))...)))).	chr1:229600484-229600733(-)$1	1	160	200	12.0937
....(((((((..(((((((.....))))))).)))))))	chr3:37360409-37360674(+)$1	1	73	113	11.8222
(.((((((((..(((((......)))))..))).))))).	chr7:128035181-128035469(-)$1	1	201	241	13.2561
.(((((.(((.(((((.(((.....)))..))))).))).	chr5:175956062-175956280(-)$1	1	148	188	11.6600
).(((....(((((((((.....))))..)))))..))).	chr3:121361685-121361998(-)$1	1	267	307	11.7624
((((...((((((((.(......).))))).)))..))))	chr17:45696949-45697297(+)$1	1	191	231	16.1908
(...(((((..(((((((((.....)))))))))..))))	chr16:30016380-30016695(+)$1	1	219	259	11.3592
...((((((((((((.(((....))).)))))))))))))	chr1:46032389-46032658(+)$1	1	36	76	14.2117
((..(.(((((((((......)))))..)))).)..))).	chr3:183491265-183491555(+)$1	1	49	89	12.0695
.(.((.(((((.(((((......))))).))))).)).).	chr17:41103796-41104068(-)$1	1	86	126	13.7394
...(((.(((.(((((((......))))))).))).))).	chr2:118860610-118860890(+)$1	1	96	136	13.8484
(((((..(((.(.(((.((.....))))).)))).)))))	chr7:129825062-129825364(-)$1	1	95	135	11.9863
((((....(((((.(((......)))..))))).)))))(	chr5:90671194-90671435(-)$1	1	60	100	13.2579
(((((....(((((((......))))))))))))...)))	chr1:19513664-19513940(-)$1	1	17	57	13.6459
((((((..(((...................)))...))).	chr8:92085909-92086192(+)$1	1	193	233	10.4679
))(((.....((..((((((...))))).)..))....))	chr16:22269662-22269934(+)$1	1	145	185	11.5702
((((((...(((((...(((...))))))))..)))))))	chr1:156108716-156108973(+)$1	1	95	135	14.2145
....(((((((.(((((......))))).)))))))))).	chr10:102013177-102013443(-)$1	1	177	217	14.7920
((((.(.(((..(((.(......)))))))))))))))..	chr19:12841770-12842032(-)$1	1	215	255	12.5793
(..(((((....((((......)))).))))).)))))))	chr1:19565694-19565925(-)$1	1	77	117	10.8317
((((((.(((((((((((((...)))))))..........	chr9:114136184-114136470(-)$1	1	68	108	11.2601

#PSSM
c : 0.16	g : 0.13	e : 0.11	= : 0.09	" : 0.08	d : 0.06	! : 0.06	f : 0.05	[ : 0.05	$ : 0.03	# : 0.03	a : 0.01	C : 0.01	b : 0.01	+ : 0.01	: : 0.01	h : 0.01	
g : 0.15	! : 0.13	= : 0.09	c : 0.09	" : 0.09	e : 0.08	[ : 0.06	f : 0.05	$ : 0.05	d : 0.03	b : 0.03	a : 0.03	# : 0.03	+ : 0.01	: : 0.01	
c : 0.19	g : 0.15	= : 0.09	e : 0.08	d : 0.08	! : 0.08	" : 0.06	[ : 0.06	f : 0.05	$ : 0.05	b : 0.03	# : 0.03	
c : 0.19	g : 0.15	b : 0.13	= : 0.09	e : 0.09	# : 0.06	f : 0.06	d : 0.06	" : 0.03	! : 0.03	a : 0.01	$ : 0.01	i : 0.01	
c : 0.18	g : 0.11	b : 0.11	[ : 0.09	e : 0.09	= : 0.08	d : 0.06	# : 0.05	f : 0.05	" : 0.05	$ : 0.03	! : 0.01	i : 0.01	a : 0.01	
" : 0.13	= : 0.11	# : 0.11	e : 0.08	[ : 0.08	g : 0.08	! : 0.08	a : 0.06	$ : 0.06	c : 0.06	d : 0.05	f : 0.03	i : 0.01	
[ : 0.18	" : 0.16	# : 0.11	e : 0.09	! : 0.09	g : 0.08	= : 0.06	f : 0.05	$ : 0.05	d : 0.03	c : 0.01	a : 0.01	i : 0.01	
c : 0.21	" : 0.11	d : 0.09	e : 0.09	# : 0.08	g : 0.08	f : 0.06	= : 0.06	$ : 0.05	a : 0.03	b : 0.03	[ : 0.01	i : 0.01	! : 0.01	
c : 0.28	d : 0.11	e : 0.09	# : 0.09	f : 0.06	g : 0.06	= : 0.06	$ : 0.05	b : 0.05	! : 0.03	" : 0.03	[ : 0.01	i : 0.01	
c : 0.28	e : 0.15	d : 0.13	g : 0.09	= : 0.06	f : 0.05	! : 0.05	$ : 0.03	# : 0.03	[ : 0.03	" : 0.01	b : 0.01	i : 0.01	a : 0.01	
e : 0.18	d : 0.13	c : 0.13	g : 0.09	[ : 0.08	a : 0.06	= : 0.06	f : 0.05	# : 0.05	" : 0.05	! : 0.05	i : 0.01	b : 0.01	
e : 0.18	[ : 0.13	c : 0.08	" : 0.08	g : 0.08	f : 0.06	! : 0.06	d : 0.06	= : 0.06	# : 0.05	a : 0.03	i : 0.03	b : 0.03	^ : 0.01	
e : 0.26	c : 0.13	g : 0.09	[ : 0.08	" : 0.06	! : 0.06	d : 0.06	f : 0.06	= : 0.06	# : 0.01	a : 0.01	b : 0.01	i : 0.01	^ : 0.01	
e : 0.31	g : 0.11	c : 0.09	! : 0.09	[ : 0.08	d : 0.08	f : 0.05	= : 0.05	" : 0.03	# : 0.01	a : 0.01	i : 0.01	^ : 0.01	
e : 0.31	c : 0.13	g : 0.11	d : 0.09	! : 0.09	[ : 0.06	= : 0.05	" : 0.03	f : 0.03	i : 0.01	^ : 0.01	a : 0.01	
e : 0.30	d : 0.15	[ : 0.11	g : 0.09	c : 0.08	a : 0.05	! : 0.05	" : 0.03	f : 0.03	r : 0.01	s : 0.01	i : 0.01	o : 0.01	^ : 0.01	
e : 0.28	d : 0.15	c : 0.13	o : 0.08	g : 0.06	[ : 0.06	a : 0.05	" : 0.03	f : 0.03	b : 0.01	! : 0.01	r : 0.01	s : 0.01	i : 0.01	^ : 0.01	
o : 0.23	c : 0.19	e : 0.18	d : 0.11	g : 0.06	b : 0.05	n : 0.03	m : 0.01	! : 0.01	f : 0.01	r : 0.01	s : 0.01	i : 0.01	^ : 0.01	
o : 0.26	c : 0.18	e : 0.11	n : 0.09	r : 0.06	d : 0.06	g : 0.05	m : 0.03	b : 0.03	l : 0.01	! : 0.01	s : 0.01	i : 0.01	^ : 0.01	
o : 0.31	m : 0.16	n : 0.11	c : 0.11	r : 0.06	l : 0.06	e : 0.03	g : 0.03	d : 0.01	a : 0.01	s : 0.01	i : 0.01	^ : 0.01	
o : 0.31	l : 0.23	n : 0.18	m : 0.16	r : 0.06	s : 0.01	^ : 0.01	
o : 0.30	l : 0.21	n : 0.18	m : 0.15	r : 0.06	e : 0.05	s : 0.01	^ : 0.01	
o : 0.23	l : 0.16	n : 0.15	m : 0.13	d : 0.08	r : 0.06	e : 0.05	a : 0.03	g : 0.03	c : 0.01	s : 0.01	^ : 0.01	
e : 0.23	c : 0.19	d : 0.11	o : 0.08	n : 0.08	r : 0.06	a : 0.06	g : 0.05	f : 0.03	b : 0.01	2 : 0.01	s : 0.01	^ : 0.01	
e : 0.23	c : 0.23	d : 0.11	g : 0.06	n : 0.06	r : 0.05	b : 0.05	o : 0.05	2 : 0.03	f : 0.03	= : 0.01	s : 0.01	] : 0.01	^ : 0.01	
e : 0.26	c : 0.26	d : 0.13	g : 0.09	r : 0.05	b : 0.03	2 : 0.03	f : 0.03	= : 0.03	] : 0.01	i : 0.01	^ : 0.01	
e : 0.23	] : 0.15	2 : 0.11	g : 0.11	c : 0.09	d : 0.06	r : 0.05	3 : 0.05	= : 0.05	f : 0.03	i : 0.01	^ : 0.01	
e : 0.33	c : 0.13	g : 0.13	2 : 0.11	= : 0.06	3 : 0.05	d : 0.05	a : 0.03	f : 0.03	] : 0.01	i : 0.01	^ : 0.01	
e : 0.21	g : 0.13	] : 0.11	2 : 0.09	c : 0.09	d : 0.08	f : 0.06	= : 0.06	3 : 0.05	a : 0.03	i : 0.01	^ : 0.01	
e : 0.28	c : 0.15	g : 0.11	d : 0.09	2 : 0.08	] : 0.08	f : 0.06	= : 0.06	i : 0.01	^ : 0.01	a : 0.01	
e : 0.28	d : 0.15	c : 0.13	g : 0.09	f : 0.06	= : 0.06	] : 0.05	a : 0.05	b : 0.03	4 : 0.01	i : 0.01	2 : 0.01	> : 0.01	
e : 0.26	c : 0.18	d : 0.13	g : 0.09	f : 0.06	= : 0.06	b : 0.05	] : 0.03	2 : 0.03	4 : 0.01	a : 0.01	i : 0.01	> : 0.01	
] : 0.18	e : 0.16	c : 0.13	d : 0.09	f : 0.06	3 : 0.06	g : 0.06	= : 0.06	b : 0.05	4 : 0.03	a : 0.01	i : 0.01	2 : 0.01	> : 0.01	
a : 0.11	c : 0.11	3 : 0.11	e : 0.09	g : 0.09	] : 0.09	d : 0.08	= : 0.08	f : 0.06	4 : 0.03	b : 0.03	i : 0.01	h : 0.01	> : 0.01	
3 : 0.19	2 : 0.19	g : 0.11	4 : 0.08	c : 0.08	e : 0.06	= : 0.06	] : 0.05	b : 0.03	f : 0.03	d : 0.03	h : 0.01	> : 0.01	
2 : 0.19	g : 0.15	3 : 0.13	] : 0.09	4 : 0.08	c : 0.06	b : 0.05	= : 0.05	d : 0.05	e : 0.03	f : 0.01	a : 0.01	i : 0.01	h : 0.01	> : 0.01	
c : 0.21	g : 0.15	3 : 0.08	4 : 0.08	e : 0.08	d : 0.08	= : 0.06	a : 0.05	f : 0.05	b : 0.05	] : 0.03	i : 0.01	h : 0.01	> : 0.01	
c : 0.21	g : 0.15	d : 0.09	e : 0.09	= : 0.08	4 : 0.08	f : 0.05	b : 0.05	a : 0.03	3 : 0.03	] : 0.03	2 : 0.01	i : 0.01	h : 0.01	> : 0.01	
c : 0.26	g : 0.15	e : 0.09	= : 0.08	d : 0.08	f : 0.06	2 : 0.05	h : 0.03	b : 0.03	3 : 0.03	] : 0.01	4 : 0.01	i : 0.01	a : 0.01	: : 0.01	> : 0.01	
] : 0.16	g : 0.15	c : 0.09	f : 0.08	d : 0.08	e : 0.08	= : 0.06	2 : 0.06	3 : 0.05	h : 0.03	: : 0.03	> : 0.03	4 : 0.01	b : 0.01	i : 0.01	

#score	754.2268609525399
#seq	60
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_UTR_m3_run2.txt

#BEAR
dd####gggggggrrrrrrrrrggggggg333dddd]ggg	chr7:104716344-104716661(+)$1	317	116	156	12.3494
ggggggg####ffffffooooooffffff333ggggggg]	chr1:9781673-9781938(+)$1	265	171	211	16.1278
cffffff[ccc[ddddnnnnndddd333ccc]ffffff]c	chr5:10290718-10291041(-)$1	323	227	267	11.7441
fffffa[dddd!!cccooooooccc22dddd]a]ffffff	chr2:223752391-223752686(+)$1	295	90	130	15.4737
===####ffffff[bboooooobb]ffffff=========	chr3:184557341-184557596(+)$1	255	199	239	16.1712
!eeeee"""dddd[cccmmmmccc]dddd333eeeee22c	chr1:52490093-52490411(-)$1	318	137	177	11.8734
dd!!ccc"""ddddbboooooobb333dddd333cccddd	chr11:33163230-33163501(-)$1	271	216	256	15.8398
fffa!!eeeee!!cccooooooccc22eeeee22a]ffff	chr19:39440871-39441140(-)$1	269	183	223	15.4786
gggg[a!!iiiiiiiiillliiiiiiiii333a]gggggg	chr22:19951904-19952173(+)$1	269	99	139	14.6811
####eeeeeccc!!bboooooobb22ccc]eeeee22eee	chr19:58992098-58992373(-)$1	275	140	180	16.1490
e####bb[a"""eeeeeooooooeeeee333a]bbeeeee	chr16:21973629-21973958(+)$1	329	160	200	13.9154
hhbb[ggggggg!!bboooooobb22ggggggg]bb]hhh	chr11:47656988-47657274(-)$1	286	132	172	15.4028
"""ggggggg!!ddddnnnnndddd]ggggggg4444bb]	chr17:73808373-73808657(+)$1	284	10	50	12.7135
#eeeee!!ffffff[aooooooa]ffffff]eeeee333b	chr16:4391390-4391706(-)$1	316	135	175	15.3729
[eeeee!!a####cccooooooccc333a22eeeeeccc2	chr7:150774533-150774798(-)$1	265	153	193	17.3480
cddddffffff[ddddoooooodddd]ffffff]dddd33	chr22:41175025-41175301(-)$1	276	96	136	12.8962
eeeee!!dddd!!cccooooooccc22dddd>>>>>>>>>	chr11:10826451-10826714(-)$1	263	81	121	14.0957
!eeeeedddd[ddddoooooodddd22dddd]eeeee]ee	chr9:134108667-134108944(+)$1	277	94	134	13.4295
ccc[dddd[bb!!ddddooooooddddbb]dddd]cccbb	chr22:42301325-42301544(+)$1	219	55	95	11.8495
:ffffff"""ffffffooooooffffff333ffffffbb[	chr9:101990035-101990312(+)$1	277	176	216	13.6253
gggg[eeeee####bboooooobb4444eeeee]gggggg	chr15:69738195-69738461(+)$1	266	135	175	16.5768
ee[ccc[ffffff[bboooooobbffffff]ccc22eeee	chr17:38183617-38183867(-)$1	250	196	236	14.6278
+eeeeecccccc[bboooooobb]ccc]ccc]eeeeehhh	chr16:1557165-1557415(+)$1	250	180	220	13.0290
ggggggg[a[bb[cccooooooccc]bb]a22ggggggg]	chr19:18547562-18547861(-)$1	299	130	170	17.2237
a[ggggggg!!ddddbboooooobb]dddd22ggggggg]	chr2:70516377-70516644(-)$1	267	202	242	15.1978
iiiiiiii####ddddooooooddddiiiiiiiiieeeee	chr1:220384087-220384368(-)$1	281	195	235	16.6058
=====[ccca[ccc[bboooooobb]ccc]a]ccc333==	chr12:132391227-132391472(+)$1	245	113	153	16.0854
cc[bb"""cccffffffnnnnnffffff4444ccc333bb	chr7:44251698-44251973(+)$1	275	198	238	11.7788
gggggg[eeeee!!bboooooobb22eeeee]ggggggg:	chr19:10284420-10284710(-)$1	290	159	199	15.9135
eeee[ggggggg[a[aooooooa22a]ggggggg]eeeee	chr17:42295563-42295819(-)$1	256	177	217	16.5174
dddeeeee####ddddoooooodddd4444eeeee]dddd	chr19:56614539-56614768(-)$1	229	148	188	14.3520
gggggggiiiiiiiiiooooooiiiiiiiiieeeee!!cc	chr4:142145597-142145879(+)$1	282	182	222	16.4273
ggggggg!!ccc"""bbnnnnnbb22cccggggggg22dd	chr5:72178145-72178445(+)$1	300	156	196	13.5166
ccceeeee!!bb[cccooooooccc]bb]eeeeedddd[d	chr2:219613414-219613698(+)$1	284	171	211	14.9436
=======[eeeee!!aooooooa22eeeee]=========	chr6:31936904-31937181(+)$1	277	83	123	16.8753
[cccbb[eeeee[cccooooooccc]eeeee]bb]ccc]d	chr15:89453045-89453314(-)$1	269	166	206	15.2454
((iiiiiiiii"""cccmmmmccc333iiiiiiiiieeee	chr2:168726387-168726633(-)$1	246	144	184	12.9914
iiiiiii!!ccc[bbbbnnnnnbb]bbccciiiiiiiii]	chr22:42017860-42018125(+)$1	265	124	164	13.1899
ee[a$$$$$gggggggooooooggggggg4444a]eeeee	chr19:40740930-40741197(-)$1	267	18	58	15.7581
::iiiiiiiii"""a[ccclllccc]a333iiiiiiiiid	chr1:31532296-31532547(-)$1	251	134	174	12.1344
!!ccc[dddd"""cccooooooccc]dddd]ccc888888	chr19:47242041-47242308(-)$1	267	140	180	13.5481
ggggggdddd[eeeeeooooooeeeeedddd]gggggggJ	chr7:72419491-72419784(-)$1	293	51	91	13.2616
####============oooooo============4444dd	chr8:124346438-124346714(-)$1	276	73	113	18.2377
ff[============rrrrrrrrr============22ff	chr17:34161476-34161706(+)$1	230	151	191	13.7769
iiiiiiiiiccc[cccooooooccc]ccc333iiiiiiii	chr3:184037292-184037601(+)$1	309	110	150	18.8853
bb"""ggggggg[cccnnnnnccc]ggggggg22bbgggg	chr17:34863654-34863915(-)$1	261	7	47	12.6460
#ffffff"""ffffffooooooffffff333ffffffeee	chr1:231076162-231076460(-)$1	298	250	290	15.3200
eeeee[==========mmmm==========22eeeeeeee	chr17:76122882-76123125(-)$1	243	116	156	13.2720
$$$bb[bb[gggggggooooooggggggg]bb]bb333bb	chr16:2258300-2258565(+)$1	265	89	129	13.7137

#otherMatches

#Seq PSSM
AACUAACUAGAAUUCCAUGUUUAUUUUAGGCAUUUCGUGA	chr7:104716344-104716661(+)$1	317	116	156	12.3494
CCCUGCGCUUCGGCCUCAUCCUGGAGGCCUACUGCAGGGG	chr1:9781673-9781938(+)$1	265	171	211	16.1278
CUAGGCCGUGAAGUUCAAGUCGAGCACAUCAAGGCUUAUG	chr5:10290718-10291041(-)$1	323	227	267	11.7441
GCAUUCGGCUCUGAUUAACUAGAAUAUGAGUAGUAAUGCU	chr2:223752391-223752686(+)$1	295	90	130	15.4737
GUAAAUUUUUAAGUGCUUUCCUGCUUUUAAAUAUUAAGUG	chr3:184557341-184557596(+)$1	255	199	239	16.1712
agguuuaCAUUUAAUCUUAAUAGGAUGAAGAGGAACCCAA	chr1:52490093-52490411(-)$1	318	137	177	11.8734
GAAGACUUAUGAACGCCUUGUUGCCCAGUUCCCCAGUUCU	chr11:33163230-33163501(-)$1	271	216	256	15.8398
GGGCGCCCGGCUAUCGCGGCGACGGCUGCCGGCGGACCCA	chr19:39440871-39441140(-)$1	269	183	223	15.4786
GGGUGGGGAGCUGGGCCAGGGGCCUGGCUGGGUGGCCUGU	chr22:19951904-19952173(+)$1	269	99	139	14.6811
CCAGGGGCAGGGAACUGGCUUGGGACCCCUUGUUCACUCU	chr19:58992098-58992373(-)$1	275	140	180	16.1490
AACAAGGGAAAACAUGGCUUAUACUGUGGAAUGCCUGCGG	chr16:21973629-21973958(+)$1	329	160	200	13.9154
UUUUUCUUUUUUUCUAUAGCAUUACCAGGAGAGUGACAAG	chr11:47656988-47657274(-)$1	286	132	172	15.4028
GGGCUGGGCUGAUGGCAGUAGGCUGGGGUCCAGGGCAGGG	chr17:73808373-73808657(+)$1	284	10	50	12.7135
ACUCGGAAGGCCCAGGGUGAAGUGUGGGCUGCUGAGGACU	chr16:4391390-4391706(-)$1	316	135	175	15.3729
AGAGGGACCAUGAAGCGCCAAAGCUAAGGAGCUCUCGGCC	chr7:150774533-150774798(-)$1	265	153	193	17.3480
UAUGUAGCUUUAAAGCAGCAAAGCUUAAAAGCUGACAUUU	chr22:41175025-41175301(-)$1	276	96	136	12.8962
UUUAAAAGCAGUUUUUCAAUUCAAAUUCUGUGUAUUAGCU	chr11:10826451-10826714(-)$1	263	81	121	14.0957
ACACAGGCAGAGCAGCAGAGCCUGUGACUGCUCUGUGACA	chr9:134108667-134108944(+)$1	277	94	134	13.4295
gccaaggaacugcaccaacuucaugguagauucucgguUG	chr22:42301325-42301544(+)$1	219	55	95	11.8495
GGCCGCACAACCUCGGCAGGCACCGGGGGGAUGUGGCGAU	chr9:101990035-101990312(+)$1	277	176	216	13.6253
UUUUCUUUUGGCUUUAGGGUGAUAUUUAUAAAACAAGGGG	chr15:69738195-69738461(+)$1	266	135	175	16.5768
AUGCUGUGCCAUGUGGCCCAGACCUAUGGUUCAGAGGUGA	chr17:38183617-38183867(-)$1	250	196	236	14.6278
UGGGCCCUUCGCUUCCACAUCGAUGCGUGAGUGGCCUGUG	chr16:1557165-1557415(+)$1	250	180	220	13.0290
GGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUCCCC	chr19:18547562-18547861(-)$1	299	130	170	17.2237
AAUUGCUUUUUACAUGUGUCUUAGCAAUGUUUGGAGCAAC	chr2:70516377-70516644(-)$1	267	202	242	15.1978
UACUUCAGGUUAUGUACGCUUCUACACUGAGGUGAGUUGA	chr1:220384087-220384368(-)$1	281	195	235	16.6058
CAGGGCCUGCCCAGGCCGAAUUGGGGCUGAGCCAGACUCC	chr12:132391227-132391472(+)$1	245	113	153	16.0854
GCCCAAUGCUGGAAUGGCACCAUCAUUCACAUCAGAACUG	chr7:44251698-44251973(+)$1	275	198	238	11.7788
GAACGGUAAGAAUAGUUACUAUACCUUUCUUUUUGUUCUA	chr19:10284420-10284710(-)$1	290	159	199	15.9135
GUUGCCCGGCCAGCACGACCGAGGAGGUGGCUGGACAGCU	chr17:42295563-42295819(-)$1	256	177	217	16.5174
UUCUGUCUCAUCCCCUUCUAACAGGGACCCAGACAUGGAG	chr19:56614539-56614768(-)$1	229	148	188	14.3520
UUUUGCUACUUUUGUAAUUCUGUACAGAAGUUACCAAUUU	chr4:142145597-142145879(+)$1	282	182	222	16.4273
CUGUGUUAGUGAAUGGCAUGAAGUACUCAGACAUAGAUAU	chr5:72178145-72178445(+)$1	300	156	196	13.5166
GAGCCAGAAGGGAGUCAAUAGCGACGCCAUCUGGGAGAAG	chr2:219613414-219613698(+)$1	284	171	211	14.9436
CUUCUUGAUCUGGUCCUUCCCUGUCCUGGAGCAGGAAGGC	chr6:31936904-31937181(+)$1	277	83	123	16.8753
GUUCCAAAAACCCCUGCCACAACGGUGGUUUAUGCGAGGA	chr15:89453045-89453314(-)$1	269	166	206	15.2454
UUCUGUGCAUUUCUUCUGGAGAGAUCUGAUGCACAGUGAU	chr2:168726387-168726633(-)$1	246	144	184	12.9914
UUCGCCUAGUGAGCAGUAGCCAACAUGUCAGGGUGGGAGU	chr22:42017860-42018125(+)$1	265	124	164	13.1899
CCAGAAGAAGGUGAGCCCCACUGCUUGCCCCAGCAGGACC	chr19:40740930-40741197(-)$1	267	18	58	15.7581
AUGAGCGUUGCAUGUGUCUUGAAGAGAAAAGCAGUGCUUU	chr1:31532296-31532547(-)$1	251	134	174	12.1344
UUGCCUCCUGUCUGCCCUCCCAGGCUCAGGUGGCCUUCCU	chr19:47242041-47242308(-)$1	267	140	180	13.5481
GUUCUCCUCUGUGAAGCGAGGAUUUCAGGAGCGAGGAUUU	chr7:72419491-72419784(-)$1	293	51	91	13.2616
AGCCUAAUAUGCUGAGUUUAUUUUUGGUAUAUUAUUAAAA	chr8:124346438-124346714(-)$1	276	73	113	18.2377
UUGCCAUUAAGAAAAUGUUAGUUUUUUUUUUGAUGGGAAA	chr17:34161476-34161706(+)$1	230	151	191	13.7769
GGUGUCAGGCAGGCAUUAGUAUAUGGUUGGGCCCUGACGC	chr3:184037292-184037601(+)$1	309	110	150	18.8853
CCACAGGUGUCAUGCUCACUCAGCCUGAUGCCCAGGCUGC	chr17:34863654-34863915(-)$1	261	7	47	12.6460
GGGAACCCUGUACUUCAUAUCAGAGGUGACUGGUUUUUGU	chr1:231076162-231076460(-)$1	298	250	290	15.3200
CUCUGUGCCCCUGUCUCAUCAGAUGGGGGCUCCGGAGGUG	chr17:76122882-76123125(-)$1	243	116	156	13.2720
GAGGGGAGGGGCUGCUGGAUGGAGUGGCUGCUGCUGGACA	chr16:2258300-2258565(+)$1	265	89	129	13.7137

#DB
((....(((((((.........)))))))...)))).)))	chr7:104716344-104716661(+)$1	1	116	156	12.3494
(((((((....((((((......))))))...))))))).	chr1:9781673-9781938(+)$1	1	171	211	16.1278
(((((((.(((.((((.....))))...))).)))))).)	chr5:10290718-10291041(-)$1	1	227	267	11.7441
((((((.((((..(((......)))..)))).).))))))	chr2:223752391-223752686(+)$1	1	90	130	15.4737
(((....((((((.((......)).)))))))))))))))	chr3:184557341-184557596(+)$1	1	199	239	16.1712
.(((((...((((.(((....))).))))...)))))..)	chr1:52490093-52490411(-)$1	1	137	177	11.8734
((..(((...((((((......))...))))...))))))	chr11:33163230-33163501(-)$1	1	216	256	15.8398
((((..(((((..(((......)))..)))))..).))))	chr19:39440871-39441140(-)$1	1	183	223	15.4786
((((.(..(((((((((...)))))))))...).))))))	chr22:19951904-19952173(+)$1	1	99	139	14.6811
....((((((((..((......))..))).)))))..)))	chr19:58992098-58992373(-)$1	1	140	180	16.1490
(....((.(...(((((......)))))...).)))))))	chr16:21973629-21973958(+)$1	1	160	200	13.9154
((((.(((((((..((......))..))))))).)).)))	chr11:47656988-47657274(-)$1	1	132	172	15.4028
...(((((((..((((.....)))).)))))))....)).	chr17:73808373-73808657(+)$1	1	10	50	12.7135
.(((((..((((((.(......).)))))).)))))...)	chr16:4391390-4391706(-)$1	1	135	175	15.3729
.(((((..(....(((......)))...)..)))))))).	chr7:150774533-150774798(-)$1	1	153	193	17.3480
(((((((((((.((((......)))).)))))).))))..	chr22:41175025-41175301(-)$1	1	96	136	12.8962
(((((..((((..(((......)))..)))).........	chr11:10826451-10826714(-)$1	1	81	121	14.0957
.(((((((((.((((......))))..)))).))))).))	chr9:134108667-134108944(+)$1	1	94	134	13.4295
(((.((((.((..((((......)))))).)))).)))))	chr22:42301325-42301544(+)$1	1	55	95	11.8495
.((((((...((((((......))))))...))))))((.	chr9:101990035-101990312(+)$1	1	176	216	13.6253
((((.(((((....((......))....))))).))))))	chr15:69738195-69738461(+)$1	1	135	175	16.5768
((.(((.((((((.((......)))))))).)))..))))	chr17:38183617-38183867(-)$1	1	196	236	14.6278
.(((((((((((.((......)).))).))).))))))))	chr16:1557165-1557415(+)$1	1	180	220	13.0290
(((((((.(.((.(((......))).)).)..))))))).	chr19:18547562-18547861(-)$1	1	130	170	17.2237
(.(((((((..((((((......)).))))..))))))).	chr2:70516377-70516644(-)$1	1	202	242	15.1978
((((((((....((((......)))))))))))))(((((	chr1:220384087-220384368(-)$1	1	195	235	16.6058
(((((.((((.(((.((......)).))).).)))...))	chr12:132391227-132391472(+)$1	1	113	153	16.0854
((.((...(((((((((.....))))))....)))...))	chr7:44251698-44251973(+)$1	1	198	238	11.7788
((((((.(((((..((......))..))))).))))))).	chr19:10284420-10284710(-)$1	1	159	199	15.9135
((((.(((((((.(.(......)..).))))))).)))))	chr17:42295563-42295819(-)$1	1	177	217	16.5174
((((((((....((((......))))....))))).))))	chr19:56614539-56614768(-)$1	1	148	188	14.3520
)))))))(((((((((......)))))))))(((((..((	chr4:142145597-142145879(+)$1	1	182	222	16.4273
(((((((..(((...((.....))..))))))))))..))	chr5:72178145-72178445(+)$1	1	156	196	13.5166
)))(((((..((.(((......))).)).)))))((((.(	chr2:219613414-219613698(+)$1	1	171	211	14.9436
(((((((.(((((..(......)..))))).)))))))))	chr6:31936904-31937181(+)$1	1	83	123	16.8753
.(((((.(((((.(((......))).))))).)).))).)	chr15:89453045-89453314(-)$1	1	166	206	15.2454
..(((((((((...(((....)))...)))))))))))))	chr2:168726387-168726633(-)$1	1	144	184	12.9914
(((((((..(((.((((.....)).)))))))))))))).	chr22:42017860-42018125(+)$1	1	124	164	13.1899
((.(.....(((((((......)))))))....).)))))	chr19:40740930-40741197(-)$1	1	18	58	15.7581
..(((((((((...(.(((...))).)...)))))))))(	chr1:31532296-31532547(-)$1	1	134	174	12.1344
..(((.((((...(((......))).)))).)))......	chr19:47242041-47242308(-)$1	1	140	180	13.5481
((((((((((.(((((......))))))))).))))))))	chr7:72419491-72419784(-)$1	1	51	91	13.2616
....((((((((((((......))))))))))))....))	chr8:124346438-124346714(-)$1	1	73	113	18.2377
((.((((((((((((.........))))))))))))..))	chr17:34161476-34161706(+)$1	1	151	191	13.7769
((((((((((((.(((......))).)))...))))))))	chr3:184037292-184037601(+)$1	1	110	150	18.8853
((...(((((((.(((.....))).)))))))..))((((	chr17:34863654-34863915(-)$1	1	7	47	12.6460
.((((((...((((((......))))))...)))))))))	chr1:231076162-231076460(-)$1	1	250	290	15.3200
(((((.((((((((((....))))))))))..)))))(((	chr17:76122882-76123125(-)$1	1	116	156	13.2720
...((.((.(((((((......))))))).)).))...))	chr16:2258300-2258565(+)$1	1	89	129	13.7137

#PSSM
g : 0.16	e : 0.12	c : 0.10	# : 0.08	d : 0.06	f : 0.06	= : 0.06	! : 0.06	i : 0.06	[ : 0.04	: : 0.04	h : 0.02	" : 0.02	+ : 0.02	a : 0.02	( : 0.02	b : 0.02	$ : 0.02	
e : 0.20	g : 0.16	f : 0.12	d : 0.08	c : 0.08	= : 0.06	# : 0.06	i : 0.06	h : 0.02	" : 0.02	[ : 0.02	( : 0.02	: : 0.02	! : 0.02	b : 0.02	$ : 0.02	
g : 0.18	e : 0.16	f : 0.10	i : 0.10	# : 0.08	c : 0.08	[ : 0.08	= : 0.06	" : 0.04	d : 0.04	! : 0.02	b : 0.02	$ : 0.02	
g : 0.20	e : 0.20	# : 0.10	i : 0.10	f : 0.08	b : 0.06	c : 0.06	= : 0.06	a : 0.04	! : 0.02	d : 0.02	[ : 0.02	" : 0.02	
e : 0.20	g : 0.16	i : 0.10	f : 0.08	[ : 0.08	= : 0.08	# : 0.06	c : 0.06	b : 0.06	d : 0.04	! : 0.02	$ : 0.02	" : 0.02	
g : 0.22	e : 0.18	i : 0.10	f : 0.08	[ : 0.08	= : 0.06	# : 0.04	a : 0.04	c : 0.04	! : 0.04	b : 0.04	d : 0.02	" : 0.02	$ : 0.02	
g : 0.20	e : 0.10	i : 0.10	f : 0.08	[ : 0.08	! : 0.08	d : 0.08	= : 0.08	c : 0.06	" : 0.04	b : 0.04	# : 0.02	$ : 0.02	
e : 0.14	g : 0.12	d : 0.12	" : 0.10	! : 0.10	i : 0.10	[ : 0.08	f : 0.06	= : 0.06	c : 0.04	# : 0.02	$ : 0.02	b : 0.02	
g : 0.12	e : 0.12	d : 0.10	i : 0.10	c : 0.08	f : 0.08	" : 0.08	# : 0.06	a : 0.06	! : 0.06	= : 0.06	[ : 0.04	$ : 0.02	
g : 0.14	c : 0.14	d : 0.12	e : 0.10	# : 0.08	f : 0.08	" : 0.08	i : 0.08	= : 0.06	! : 0.04	b : 0.02	[ : 0.02	a : 0.02	
c : 0.14	g : 0.12	f : 0.12	# : 0.10	d : 0.08	e : 0.08	i : 0.08	[ : 0.06	b : 0.06	= : 0.06	" : 0.04	! : 0.04	
f : 0.14	g : 0.12	c : 0.12	! : 0.10	d : 0.08	" : 0.08	# : 0.08	e : 0.08	= : 0.06	[ : 0.04	i : 0.04	b : 0.04	
d : 0.18	[ : 0.16	f : 0.14	! : 0.14	" : 0.08	g : 0.06	e : 0.06	= : 0.06	i : 0.04	# : 0.04	c : 0.02	
c : 0.22	d : 0.18	f : 0.10	! : 0.08	[ : 0.06	" : 0.06	= : 0.06	i : 0.04	e : 0.04	b : 0.04	g : 0.04	r : 0.02	# : 0.02	a : 0.02	
c : 0.24	b : 0.18	d : 0.16	f : 0.08	[ : 0.06	= : 0.06	i : 0.04	e : 0.04	g : 0.04	r : 0.02	" : 0.02	! : 0.02	a : 0.02	
c : 0.24	b : 0.22	d : 0.12	f : 0.08	a : 0.06	r : 0.04	i : 0.04	e : 0.04	o : 0.04	g : 0.04	= : 0.04	[ : 0.02	
o : 0.63	b : 0.08	n : 0.06	c : 0.06	r : 0.04	f : 0.04	i : 0.02	e : 0.02	d : 0.02	m : 0.02	
o : 0.73	n : 0.12	m : 0.06	r : 0.04	l : 0.02	c : 0.02	
o : 0.73	n : 0.12	m : 0.06	r : 0.04	l : 0.02	c : 0.02	
o : 0.73	n : 0.12	m : 0.06	r : 0.04	l : 0.04	
o : 0.73	n : 0.12	r : 0.04	m : 0.04	i : 0.02	l : 0.02	= : 0.02	
o : 0.69	d : 0.06	c : 0.06	n : 0.06	r : 0.04	i : 0.02	b : 0.02	l : 0.02	= : 0.02	
c : 0.26	b : 0.20	d : 0.12	o : 0.10	g : 0.06	a : 0.06	f : 0.06	i : 0.04	= : 0.04	e : 0.02	r : 0.02	
c : 0.26	b : 0.22	d : 0.14	f : 0.08	g : 0.06	i : 0.04	e : 0.04	] : 0.04	2 : 0.04	= : 0.04	r : 0.02	
c : 0.22	d : 0.14	f : 0.12	2 : 0.12	] : 0.08	g : 0.06	= : 0.06	3 : 0.04	i : 0.04	e : 0.04	b : 0.04	4 : 0.02	
] : 0.18	2 : 0.16	f : 0.14	d : 0.10	g : 0.08	3 : 0.08	e : 0.06	= : 0.06	i : 0.04	4 : 0.02	c : 0.02	a : 0.02	b : 0.02	
f : 0.14	g : 0.12	c : 0.10	e : 0.10	3 : 0.08	2 : 0.08	d : 0.08	i : 0.06	b : 0.06	= : 0.06	] : 0.04	4 : 0.04	a : 0.02	
f : 0.16	d : 0.16	g : 0.14	e : 0.10	c : 0.10	i : 0.08	3 : 0.06	b : 0.06	= : 0.06	4 : 0.04	] : 0.02	
d : 0.16	g : 0.14	c : 0.14	f : 0.10	e : 0.10	i : 0.08	3 : 0.08	= : 0.06	] : 0.04	4 : 0.04	a : 0.02	b : 0.02	
3 : 0.18	d : 0.14	e : 0.12	g : 0.10	f : 0.08	] : 0.08	c : 0.06	i : 0.06	4 : 0.06	= : 0.06	2 : 0.02	a : 0.02	
3 : 0.16	e : 0.14	d : 0.12	g : 0.10	i : 0.10	] : 0.08	2 : 0.08	c : 0.04	f : 0.04	4 : 0.04	= : 0.04	a : 0.02	b : 0.02	
] : 0.16	e : 0.16	3 : 0.12	g : 0.10	= : 0.08	i : 0.08	f : 0.06	2 : 0.06	c : 0.04	4 : 0.04	a : 0.02	> : 0.02	d : 0.02	b : 0.02	
e : 0.22	g : 0.18	i : 0.10	f : 0.08	= : 0.08	c : 0.08	d : 0.04	a : 0.04	2 : 0.04	] : 0.04	3 : 0.02	> : 0.02	b : 0.02	4 : 0.02	
e : 0.20	g : 0.14	] : 0.10	i : 0.10	= : 0.08	c : 0.08	f : 0.06	b : 0.06	d : 0.04	2 : 0.04	3 : 0.02	4 : 0.02	> : 0.02	a : 0.02	
e : 0.18	g : 0.16	i : 0.10	f : 0.08	b : 0.08	] : 0.08	d : 0.06	= : 0.06	c : 0.06	4 : 0.04	a : 0.02	> : 0.02	2 : 0.02	8 : 0.02	
e : 0.22	g : 0.16	f : 0.08	i : 0.08	d : 0.06	= : 0.06	c : 0.06	3 : 0.06	] : 0.04	2 : 0.04	b : 0.04	4 : 0.04	> : 0.02	8 : 0.02	
e : 0.20	g : 0.16	f : 0.10	c : 0.08	3 : 0.08	2 : 0.06	d : 0.06	i : 0.06	] : 0.04	= : 0.04	4 : 0.04	> : 0.02	! : 0.02	8 : 0.02	
g : 0.18	e : 0.18	d : 0.08	3 : 0.08	f : 0.06	2 : 0.06	c : 0.06	i : 0.06	= : 0.04	h : 0.04	b : 0.04	> : 0.02	] : 0.02	! : 0.02	8 : 0.02	4 : 0.02	
e : 0.20	g : 0.18	b : 0.10	d : 0.08	f : 0.06	= : 0.06	i : 0.06	] : 0.04	h : 0.04	3 : 0.04	c : 0.04	2 : 0.02	> : 0.02	[ : 0.02	8 : 0.02	
e : 0.20	d : 0.14	] : 0.10	g : 0.08	b : 0.08	c : 0.06	f : 0.06	= : 0.06	h : 0.04	2 : 0.02	3 : 0.02	> : 0.02	[ : 0.02	: : 0.02	8 : 0.02	J : 0.02	i : 0.02	

#score	718.1907932213027
#seq	49
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_CDS_m1_run2.txt

#BEAR
[bb[dddd[attttttttttta]ddddbb]dd	chr2:232577058-232577322(+)$1	264	148	180	19.6338
ccc[fffffftttttttttttffffff]ccc:	chr19:8553566-8553867(+)$1	301	222	254	18.9353
eeee^^^^^^^^^^^^^^^^^^eeeee333ee	chr10:97817576-97817842(-)$1	266	229	261	15.4242
[bba[eeeeeuuuuuuuuuuuueeeee]a]bb	chr10:43088820-43089084(-)$1	264	185	217	20.7950
$$hhhhhhhhttttttttttthhhhhhhhddd	chr1:202715196-202715549(-)$1	353	151	183	17.2081
c!!gggggggwwwwwwwwwwwwwwgggggggc	chr6:42994712-42994971(+)$1	259	26	58	20.7356
bb[ffffffwwwwwwwwwwwwwwffffff]bb	chr2:232326583-232326829(-)$1	246	206	238	19.2767
==========ttttttttttt==========:	chr7:97493511-97493810(-)$1	299	211	243	20.5227
:bb[gggggggssssssssssggggggg]bb:	chr21:33982047-33982273(-)$1	226	80	112	13.8681
!bb^^^^^^^^^^^^^^^^^^^^^^^bb22hh	chr11:32608569-32608791(+)$1	222	126	158	14.5685
eeeeedddduuuuuuuuuuuudddd22eeeee	chr15:31220611-31220885(+)$1	274	131	163	19.3552
eeee[eeeee^^^^^^^^^^^^^^^^^^^^^^	chr1:154233990-154234269(+)$1	279	156	188	14.1052
!!bb[eeeeerrrrrrrrreeeee]bb333ee	chr1:173912611-173912933(-)$1	322	47	79	12.1436
!!hhhhhhhhttttttttttthhhhhhhh]ff	chr10:70099095-70099352(+)$1	257	6	38	18.0118
dddbb[eeeeesssssssssseeeeebb]ddd	chr1:205688673-205688906(-)$1	233	31	63	14.3667
!!bbffffffuuuuuuuuuuuuffffff]bb4	chr2:33572335-33572663(+)$1	328	24	56	20.1115
f[a[bb[ccctttttttttttccc]bb]a333	chr9:100774602-100774805(+)$1	203	136	168	20.9698
gg$$$$$eeeeerrrrrrrrreeeee4444gg	chr5:132412482-132412691(+)$1	209	8	40	11.7494
a[ffffffvvvvvvvvvvvvvffffff]a22b	chr17:55187229-55187519(+)$1	290	131	163	19.4027
eee[a[ddddssssssssssdddd]a]eeeee	chr10:70726679-70726939(+)$1	260	192	224	14.8772
ddd"""bbvvvvvvvvvvvvvbb22dddd]ee	chr10:70098289-70098546(+)$1	257	61	93	18.6029
dddgggggggtttttttttttggggggg22dd	chr7:102760128-102760441(-)$1	313	216	248	20.8645
eeeeeyyyyyyyyyyyyyyyyeeeeeccc:dd	chr15:72509647-72509877(-)$1	230	13	45	17.1266
ggggggg[bbuuuuuuuuuuuubb]ggggggg	chr11:47379875-47380255(-)$1	380	111	143	21.0783
e[dddd[ccctttttttttttccc]dddd]ee	chr3:47752071-47752379(-)$1	308	202	234	20.2513
iiii####cccssssssssssccc4444iiii	chr10:33200421-33200698(-)$1	277	72	104	16.8096
hhhhhhhhwwwwwwwwwwwwwwhhhhhhhhhh	chr14:69853617-69853864(-)$1	247	62	94	17.7771
'''ffffffuuuuuuuuuuuuffffff88888	chr20:57473776-57474101(+)$1	325	74	106	16.8409
eeebbxxxxxxxxxxxxxxxbb]eeeee22hh	chr2:152346402-152346705(+)$1	303	94	126	14.1552
hhhhhhhhwwwwwwwwwwwwwwhhhhhhhhhh	chr14:69853664-69853890(-)$1	226	88	120	17.7771
ff[ffffffvvvvvvvvvvvvvffffff22ff	chr1:205689589-205689881(-)$1	292	50	82	19.8473
ggggg!!ccctttttttttttccc22gggggg	chr9:100774605-100774854(+)$1	249	91	123	21.4114
dd"""ccc[cccrrrrrrrrrccc]ccc22dd	chr10:73578338-73578582(-)$1	244	153	185	13.6457
e####eeeeeyyyyyyyyyyyyyyyyeeeee6	chr14:73577441-73577794(+)$1	353	229	261	17.7616
"""dddd[cccsssssssssscccdddd22dd	chr12:50410311-50410598(-)$1	287	169	201	16.0201
ffffff[ccc^^^^^^^^^^^^^^^^^^^^cc	chr10:38344278-38344531(+)$1	253	125	157	14.6133
gggggg[cccxxxxxxxxxxxxxxxccc]ggg	chr5:137495169-137495485(-)$1	316	55	87	17.5248
="""a^^^^^^^^^^^^^^^^^^^^^^a22==	chr9:100773452-100773705(+)$1	253	98	130	16.2503
ccc!!dddduuuuuuuuuuuudddd22ccc77	chr1:185267181-185267450(-)$1	269	89	121	19.5385
d[dddd[ddddssssssssssdddd333dddd	chr19:41125153-41125416(+)$1	263	164	196	14.6572
ddd^^^^^^^^^^^^^^^^^^ddddccc]ccc	chr11:18425142-18425347(+)$1	205	27	59	14.3978
!ddddddddbbssssssssssbb]dddd22dd	chr12:120959929-120960241(-)$1	312	263	295	14.3541
gggggggwwwwwwwwwwwwwwggggggg::::	chr4:2242373-2242679(-)$1	306	131	163	17.3082
[bb[ffffffssssssssssffffff]bb]dd	chr6:159049162-159049459(+)$1	297	15	47	14.6378
======:cccvvvvvvvvvvvvvccccccooo	chr2:232327809-232328091(-)$1	282	60	92	19.1999
ffffff!!bbvvvvvvvvvvvvvbb22fffff	chr3:183898841-183899107(+)$1	266	146	178	18.2736
bb[ccc[cccuuuuuuuuuuuuccccccbb::	chr3:183898628-183898873(+)$1	245	0	32	19.3400
=="""eeeeesssssssssseeeee22=====	chr16:84792069-84792443(+)$1	374	147	179	15.9747
bb!!cccwwwwwwwwwwwwwwccc22bb333c	chr9:131456197-131456423(+)$1	226	114	146	20.5111
eeee"""ccctttttttttttccc333eeeee	chr19:41847818-41848083(-)$1	265	108	140	20.7425
ddd"""ddddtttttttttttdddd4444ddd	chr1:33485600-33485916(-)$1	316	215	247	19.7953
="""a^^^^^^^^^^^^^^^^^^^^^^a22==	chr9:100773505-100773771(+)$1	266	45	77	16.2503
iiiiiii[bb^^^^^^^^^^^^^^^^^^^bb]	chr1:162492165-162492398(+)$1	233	183	215	14.6355
$$$a!!cccauuuuuuuuuuuua]ccc22a66	chr2:47397769-47398005(-)$1	236	76	108	20.8491
bb[gggggggtttttttttttggggggg]bbE	chr11:32610037-32610331(+)$1	294	182	214	19.5389
f!!gggggggtttttttttttggggggg22ff	chr15:45007766-45008001(+)$1	235	172	204	21.2511
ggg!!gggggggrrrrrrrrrggggggg]ggg	chr1:76254755-76255051(+)$1	296	83	115	12.7998
hhhhhhhhwwwwwwwwwwwwwwhhhhhhhhhh	chr14:69853690-69853905(-)$1	215	103	135	17.7771
ggggggg[bbssssssssssbb]ggggggg:d	chr2:96933482-96933758(+)$1	276	73	105	14.9032

#otherMatches

#Seq PSSM
GGGCAGCUGAAGAUGAUGAGGUGGGUUCUGGC	chr2:232577058-232577322(+)$1	264	148	180	19.6338
UCUUGUUAACCAUUUUAAUUUGUUGGCUGGAU	chr19:8553566-8553867(+)$1	301	222	254	18.9353
GCUUCUUUCACAUCAUUAUCAUGAGCGCUGAA	chr10:97817576-97817842(-)$1	266	229	261	15.4242
AUGCAUGUGGGAAAACUUUCUACCACAAGUCA	chr10:43088820-43089084(-)$1	264	185	217	20.7950
UCAGUGUGUAAAAUGCAAAACUACAUGCUUCA	chr1:202715196-202715549(-)$1	353	151	183	17.2081
gguugcagugagccaagaucacaccacugcac	chr6:42994712-42994971(+)$1	259	26	58	20.7356
GCAGCUGUCACUCCAGGCAAAAAGGCAGCAGC	chr2:232326583-232326829(-)$1	246	206	238	19.2767
AUUUUUGGCUGUAUGUUCAGAAGCUAAAGGUA	chr7:97493511-97493810(-)$1	299	211	243	20.5227
GGUGCAGUGUUUAAAAAGGAUGAUAUUGGACG	chr21:33982047-33982273(-)$1	226	80	112	13.8681
UUUUUAAUUUUUUUCUAAUAUUUCCUAAUAAA	chr11:32608569-32608791(+)$1	222	126	158	14.5685
gACCUUGUCUUAGGGAUUCAUGGCGAAGGGUC	chr15:31220611-31220885(+)$1	274	131	163	19.3552
GAUAUGGGUCUCAUGGAUACAACACUGGUAAG	chr1:154233990-154234269(+)$1	279	156	188	14.1052
UACAGUUGCAUUAUUUUGUUGCAAAUGGCUGG	chr1:173912611-173912933(-)$1	322	47	79	12.1436
UCCUAUAUAGAGCUUUAUACCUUGUAUAGUAU	chr10:70099095-70099352(+)$1	257	6	38	18.0118
CACUCUCUUCCUUUUUUACUUGGAAGGAUGUG	chr1:205688673-205688906(-)$1	233	31	63	14.3667
UGGCACAGCUGGUAAAAUAGAGAGCUGUCGUG	chr2:33572335-33572663(+)$1	328	24	56	20.1115
GAGGAUGAGGAUGAAGGUGGGCCUAAUGCAUG	chr9:100774602-100774805(+)$1	203	136	168	20.9698
GUGAGAAACUCAAGAAAUUGAUGAGUGCAAAU	chr5:132412482-132412691(+)$1	209	8	40	11.7494
GUGCCUGCUGCUUCUUCCCCUGCAGGUUCUGA	chr17:55187229-55187519(+)$1	290	131	163	19.4027
CAUGUUGUCCUGGAUGAAGUGGACCAGAUGUU	chr10:70726679-70726939(+)$1	260	192	224	14.8772
GAUAGACCAAUAGGAGGAAGAGGGGGUUAUUA	chr10:70098289-70098546(+)$1	257	61	93	18.6029
UCUUUACACCUUCCCAGCACUGGUGUAAAAGG	chr7:102760128-102760441(-)$1	313	216	248	20.8645
GGCUUUAAAACUUUUCCUAAUAGGCCCAGCUU	chr15:72509647-72509877(-)$1	230	13	45	17.1266
uguacaucugggugugugugagcaagugugCA	chr11:47379875-47380255(-)$1	380	111	143	21.0783
AAGAGGUAUUUUCUUUGGCACAGUUUCUCAUC	chr3:47752071-47752379(-)$1	308	202	234	20.2513
UUUUGAGAAAUGAUAUGCUUAAUUGCAGGAAA	chr10:33200421-33200698(-)$1	277	72	104	16.8096
AGGUGUUUGUAAAAUGUAUGAAGAACAUCUGA	chr14:69853617-69853864(-)$1	247	62	94	17.7771
AAUUGCCGGGAGGAUGGAUGGCUGGCGCGCGA	chr20:57473776-57474101(+)$1	325	74	106	16.8409
UGGAUGAGAUGGGAUGGAAGAUACCGUUGUCU	chr2:152346402-152346705(+)$1	303	94	126	14.1552
AGGUGUUUGUAAAAUGUAUGAAGAACAUCUGA	chr14:69853664-69853890(-)$1	226	88	120	17.7771
CAAAUAUAAAAUUCUUUAAUCAUUAUAUCAUG	chr1:205689589-205689881(-)$1	292	50	82	19.8473
CUUUAGGAAGAAGAAUUUGGACUUGAUGAAGA	chr9:100774605-100774854(+)$1	249	91	123	21.4114
GUAUAUGGGGCCCAAGCUACUGGUGCCAGAAC	chr10:73578338-73578582(-)$1	244	153	185	13.6457
CAAAAGCCUUGUCUGAAACCUACUCUGAGGCC	chr14:73577441-73577794(+)$1	353	229	261	17.7616
GAAGGAAAUGAAGUCCGUAAGUCAUUCUGAGC	chr12:50410311-50410598(-)$1	287	169	201	16.0201
GUGUGACUUCGCACCUUAAAGUACACCAGAGA	chr10:38344278-38344531(+)$1	253	125	157	14.6133
UUUGGAUCUCUUUCCUCUUGUUCUUGAGUUUU	chr5:137495169-137495485(-)$1	316	55	87	17.5248
agaaggagaagaugaggaagacgaggacgaug	chr9:100773452-100773705(+)$1	253	98	130	16.2503
UAUGAUCCAACUAGAAAUGAAUGGAAGAUGAU	chr1:185267181-185267450(-)$1	269	89	121	19.5385
CCUUCCUCUGUGUCUGCCCCAACAGCCCGGAA	chr19:41125153-41125416(+)$1	263	164	196	14.6572
UAGGAAAAUGAAUCACAAUUACUAAUCUGUUG	chr11:18425142-18425347(+)$1	205	27	59	14.3978
UGUUUUACAGAAAUUAGUCUCUCUUGUAAUGA	chr12:120959929-120960241(-)$1	312	263	295	14.3541
GUUUUGUGGGAAUGUGAAUGAACAGAACGUGU	chr4:2242373-2242679(-)$1	306	131	163	17.3082
UGCAGCAGGGUUCAUCCUGUCCCUGCAGCCGG	chr6:159049162-159049459(+)$1	297	15	47	14.6378
UUAGGCAGGUAAAAAUCAAGGUGACCCCAAGA	chr2:232327809-232328091(-)$1	282	60	92	19.1999
AGGCACAGCUGAUGAAACAAGCAAGAGGUGCC	chr3:183898841-183899107(+)$1	266	146	178	18.2736
UCAUGUAGACAAAAGAAGAGCAGUCACAGAUC	chr3:183898628-183898873(+)$1	245	0	32	19.3400
CUGAAGGGAUUUUAAAUGCUGUCCCAGAGUAG	chr16:84792069-84792443(+)$1	374	147	179	15.9747
ggaaggagagguaaaagaaAAUUUGGCUAAAC	chr9:131456197-131456423(+)$1	226	114	146	20.5111
UGUGUAUGUCCCCUAUCCCCUGACUCCCACAC	chr19:41847818-41848083(-)$1	265	108	140	20.7425
UAGCCUACAGUUGUCUCUACCCUGUUUCACUA	chr1:33485600-33485916(-)$1	316	215	247	19.7953
agaaggagaagaugaggaagacgaggacgaug	chr9:100773505-100773771(+)$1	266	45	77	16.2503
CUAAGGACUGUUUCCUUUUUCUCCUCUUCCAU	chr1:162492165-162492398(+)$1	233	183	215	14.6355
AACCUUCCUCUUUGAUCUCUUUGUAGGCUGAC	chr2:47397769-47398005(-)$1	236	76	108	20.8491
CUAUGUGAAAAGCUGGUCAAAUUUCGCGAAGG	chr11:32610037-32610331(+)$1	294	182	214	19.5389
UAUGAGUAGUCAUAUCAUAAAGCUGCUUUGAU	chr15:45007766-45008001(+)$1	235	172	204	21.2511
UUUAGGAAUACUGUAUGUCUGAGUAUUUGAGA	chr1:76254755-76255051(+)$1	296	83	115	12.7998
AGGUGUUUGUAAAAUGUAUGAAGAACAUCUGA	chr14:69853690-69853905(-)$1	215	103	135	17.7771
CCUUUUUCUCUCCCACAGUUGAUGAAGAGGAU	chr2:96933482-96933758(+)$1	276	73	105	14.9032

#DB
.((.((((.(...........).)))))).))	chr2:232577058-232577322(+)$1	1	148	180	19.6338
(((.((((((...........)))))).))).	chr19:8553566-8553867(+)$1	1	222	254	18.9353
((((..................)))))...))	chr10:97817576-97817842(-)$1	1	229	261	15.4242
.(((.(((((............))))).).))	chr10:43088820-43089084(-)$1	1	185	217	20.7950
..((((((((...........)))))))))))	chr1:202715196-202715549(-)$1	1	151	183	17.2081
(..(((((((..............))))))))	chr6:42994712-42994971(+)$1	1	26	58	20.7356
((.((((((..............)))))).))	chr2:232326583-232326829(-)$1	1	206	238	19.2767
((((((((((...........)))))))))).	chr7:97493511-97493810(-)$1	1	211	243	20.5227
.((.(((((((..........))))))).)).	chr21:33982047-33982273(-)$1	1	80	112	13.8681
.((.......................))..))	chr11:32608569-32608791(+)$1	1	126	158	14.5685
(((((((((............))))..)))))	chr15:31220611-31220885(+)$1	1	131	163	19.3552
((((.(((((......................	chr1:154233990-154234269(+)$1	1	156	188	14.1052
..((.(((((.........))))).))...))	chr1:173912611-173912933(-)$1	1	47	79	12.1436
..((((((((...........)))))))).))	chr10:70099095-70099352(+)$1	1	6	38	18.0118
(((((.(((((..........))))))).)))	chr1:205688673-205688906(-)$1	1	31	63	14.3667
..((((((((............)))))).)).	chr2:33572335-33572663(+)$1	1	24	56	20.1115
(.(.((.(((...........))).)).)...	chr9:100774602-100774805(+)$1	1	136	168	20.9698
((.....(((((.........)))))....))	chr5:132412482-132412691(+)$1	1	8	40	11.7494
(.((((((.............)))))).)..)	chr17:55187229-55187519(+)$1	1	131	163	19.4027
(((.(.((((..........)))).).)))))	chr10:70726679-70726939(+)$1	1	192	224	14.8772
(((...((.............))..)))).))	chr10:70098289-70098546(+)$1	1	61	93	18.6029
((((((((((...........)))))))..))	chr7:102760128-102760441(-)$1	1	216	248	20.8645
(((((................)))))))).((	chr15:72509647-72509877(-)$1	1	13	45	17.1266
(((((((.((............)).)))))))	chr11:47379875-47380255(-)$1	1	111	143	21.0783
(.((((.(((...........))).)))).))	chr3:47752071-47752379(-)$1	1	202	234	20.2513
((((....(((..........)))....))))	chr10:33200421-33200698(-)$1	1	72	104	16.8096
((((((((..............))))))))))	chr14:69853617-69853864(-)$1	1	62	94	17.7771
...((((((............)))))).....	chr20:57473776-57474101(+)$1	1	74	106	16.8409
(((((...............)).)))))..))	chr2:152346402-152346705(+)$1	1	94	126	14.1552
((((((((..............))))))))))	chr14:69853664-69853890(-)$1	1	88	120	17.7771
((.((((((.............))))))..))	chr1:205689589-205689881(-)$1	1	50	82	19.8473
(((((..(((...........)))..))))))	chr9:100774605-100774854(+)$1	1	91	123	21.4114
((...(((.(((.........))).)))..))	chr10:73578338-73578582(-)$1	1	153	185	13.6457
(....(((((................))))).	chr14:73577441-73577794(+)$1	1	229	261	17.7616
...((((.(((..........)))))))..))	chr12:50410311-50410598(-)$1	1	169	201	16.0201
((((((.(((....................))	chr10:38344278-38344531(+)$1	1	125	157	14.6133
((((((.(((...............))).)))	chr5:137495169-137495485(-)$1	1	55	87	17.5248
(...(......................)..))	chr9:100773452-100773705(+)$1	1	98	130	16.2503
(((..((((............))))..)))..	chr1:185267181-185267450(-)$1	1	89	121	19.5385
(.((((.((((..........))))...))))	chr19:41125153-41125416(+)$1	1	164	196	14.6572
(((..................))))))).)))	chr11:18425142-18425347(+)$1	1	27	59	14.3978
.((((((((((..........)).))))..))	chr12:120959929-120960241(-)$1	1	263	295	14.3541
(((((((..............)))))))....	chr4:2242373-2242679(-)$1	1	131	163	17.3082
.((.((((((..........)))))).)).))	chr6:159049162-159049459(+)$1	1	15	47	14.6378
)))))).(((.............)))(((...	chr2:232327809-232328091(-)$1	1	60	92	19.1999
((((((..((.............))..)))))	chr3:183898841-183899107(+)$1	1	146	178	18.2736
((.(((.(((............))))))))..	chr3:183898628-183898873(+)$1	1	0	32	19.3400
((...(((((..........)))))..)))))	chr16:84792069-84792443(+)$1	1	147	179	15.9747
((..(((..............)))..))...)	chr9:131456197-131456423(+)$1	1	114	146	20.5111
((((...(((...........)))...)))))	chr19:41847818-41848083(-)$1	1	108	140	20.7425
(((...((((...........))))....)))	chr1:33485600-33485916(-)$1	1	215	247	19.7953
(...(......................)..))	chr9:100773505-100773771(+)$1	1	45	77	16.2503
(((((((.((...................)).	chr1:162492165-162492398(+)$1	1	183	215	14.6355
...(..((((............).)))..)..	chr2:47397769-47398005(-)$1	1	76	108	20.8491
((.(((((((...........))))))).)))	chr11:32610037-32610331(+)$1	1	182	214	19.5389
(..(((((((...........)))))))..))	chr15:45007766-45008001(+)$1	1	172	204	21.2511
(((..(((((((.........))))))).)))	chr1:76254755-76255051(+)$1	1	83	115	12.7998
((((((((..............))))))))))	chr14:69853690-69853905(-)$1	1	103	135	17.7771
(((((((.((..........)).))))))).(	chr2:96933482-96933758(+)$1	1	73	105	14.9032

#PSSM
e : 0.15	d : 0.11	g : 0.11	= : 0.08	! : 0.08	f : 0.08	b : 0.06	[ : 0.05	c : 0.05	h : 0.05	$ : 0.03	i : 0.03	: : 0.01	a : 0.01	' : 0.01	" : 0.01	
b : 0.15	e : 0.11	d : 0.11	g : 0.11	! : 0.08	[ : 0.06	= : 0.05	h : 0.05	f : 0.05	" : 0.05	c : 0.03	$ : 0.03	i : 0.03	' : 0.01	# : 0.01	
d : 0.13	b : 0.11	e : 0.11	g : 0.10	h : 0.08	" : 0.08	[ : 0.06	! : 0.05	f : 0.05	c : 0.03	= : 0.03	$ : 0.03	i : 0.03	a : 0.01	' : 0.01	# : 0.01	
g : 0.15	[ : 0.10	f : 0.10	" : 0.10	e : 0.08	h : 0.08	b : 0.06	d : 0.06	! : 0.05	a : 0.03	= : 0.03	^ : 0.03	i : 0.03	$ : 0.01	# : 0.01	c : 0.01	
g : 0.16	f : 0.15	d : 0.08	h : 0.08	" : 0.08	^ : 0.05	[ : 0.05	b : 0.05	a : 0.05	! : 0.05	= : 0.03	e : 0.03	# : 0.03	c : 0.03	$ : 0.01	i : 0.01	
g : 0.16	f : 0.15	d : 0.11	^ : 0.08	e : 0.08	h : 0.08	" : 0.05	c : 0.05	= : 0.03	[ : 0.03	! : 0.03	b : 0.01	$ : 0.01	y : 0.01	# : 0.01	x : 0.01	i : 0.01	
g : 0.15	d : 0.11	f : 0.11	e : 0.10	[ : 0.10	^ : 0.08	h : 0.08	c : 0.05	! : 0.03	= : 0.01	$ : 0.01	b : 0.01	y : 0.01	# : 0.01	x : 0.01	: : 0.01	" : 0.01	i : 0.01	
c : 0.16	d : 0.11	f : 0.11	e : 0.11	g : 0.10	^ : 0.08	h : 0.08	[ : 0.06	w : 0.03	= : 0.01	b : 0.01	y : 0.01	# : 0.01	x : 0.01	! : 0.01	
c : 0.18	e : 0.11	f : 0.10	g : 0.10	d : 0.10	^ : 0.08	w : 0.08	b : 0.06	[ : 0.03	h : 0.03	v : 0.03	= : 0.01	y : 0.01	x : 0.01	
c : 0.18	e : 0.11	g : 0.10	w : 0.10	^ : 0.08	b : 0.08	f : 0.05	u : 0.05	v : 0.05	d : 0.05	a : 0.03	h : 0.03	= : 0.01	y : 0.01	x : 0.01	
t : 0.22	^ : 0.13	u : 0.13	w : 0.11	v : 0.08	s : 0.06	c : 0.05	g : 0.03	e : 0.03	y : 0.03	x : 0.03	r : 0.01	d : 0.01	b : 0.01	
t : 0.22	s : 0.16	^ : 0.13	u : 0.13	w : 0.11	v : 0.08	y : 0.03	x : 0.03	r : 0.01	e : 0.01	c : 0.01	g : 0.01	
t : 0.22	s : 0.16	^ : 0.13	u : 0.13	w : 0.11	v : 0.08	r : 0.06	y : 0.03	x : 0.03	
t : 0.22	s : 0.16	^ : 0.13	u : 0.13	w : 0.11	v : 0.08	r : 0.06	y : 0.03	x : 0.03	
t : 0.22	s : 0.16	^ : 0.13	u : 0.13	w : 0.11	v : 0.08	r : 0.06	y : 0.03	x : 0.03	
t : 0.22	s : 0.16	^ : 0.13	u : 0.13	w : 0.11	v : 0.08	r : 0.06	y : 0.03	x : 0.03	
t : 0.22	s : 0.16	^ : 0.13	u : 0.13	w : 0.11	v : 0.08	r : 0.06	y : 0.03	x : 0.03	
t : 0.22	s : 0.16	^ : 0.13	u : 0.13	w : 0.11	v : 0.08	r : 0.06	y : 0.03	x : 0.03	
t : 0.22	s : 0.16	^ : 0.13	u : 0.13	w : 0.11	v : 0.08	r : 0.06	y : 0.03	x : 0.03	
t : 0.22	s : 0.16	^ : 0.13	u : 0.13	w : 0.11	v : 0.08	r : 0.05	y : 0.03	x : 0.03	e : 0.01	
t : 0.22	^ : 0.13	u : 0.13	w : 0.11	s : 0.10	v : 0.08	r : 0.05	e : 0.03	y : 0.03	b : 0.03	d : 0.01	x : 0.01	f : 0.01	
c : 0.13	^ : 0.11	g : 0.10	d : 0.10	u : 0.08	w : 0.08	e : 0.08	f : 0.06	b : 0.06	v : 0.05	h : 0.03	a : 0.01	= : 0.01	y : 0.01	x : 0.01	
c : 0.15	e : 0.11	f : 0.10	g : 0.10	^ : 0.10	d : 0.10	h : 0.08	] : 0.05	b : 0.05	w : 0.03	v : 0.03	= : 0.01	y : 0.01	x : 0.01	a : 0.01	
c : 0.16	e : 0.13	d : 0.11	f : 0.11	g : 0.11	^ : 0.10	h : 0.08	b : 0.03	] : 0.03	w : 0.01	= : 0.01	2 : 0.01	y : 0.01	x : 0.01	
d : 0.13	g : 0.13	f : 0.11	e : 0.11	^ : 0.10	] : 0.10	h : 0.08	2 : 0.05	c : 0.05	= : 0.01	4 : 0.01	y : 0.01	x : 0.01	b : 0.01	3 : 0.01	
g : 0.15	f : 0.11	e : 0.10	^ : 0.10	2 : 0.10	c : 0.10	d : 0.08	h : 0.08	b : 0.03	4 : 0.03	3 : 0.03	= : 0.01	a : 0.01	y : 0.01	
g : 0.16	c : 0.11	f : 0.10	d : 0.08	h : 0.08	b : 0.08	^ : 0.08	e : 0.06	2 : 0.06	4 : 0.05	] : 0.03	3 : 0.03	= : 0.01	
g : 0.16	c : 0.11	b : 0.08	h : 0.08	e : 0.08	] : 0.06	f : 0.06	d : 0.06	3 : 0.05	^ : 0.05	4 : 0.05	= : 0.03	a : 0.03	8 : 0.01	2 : 0.01	
2 : 0.18	] : 0.11	h : 0.08	c : 0.06	g : 0.06	e : 0.06	b : 0.05	3 : 0.05	a : 0.05	^ : 0.05	d : 0.05	f : 0.03	= : 0.03	4 : 0.03	i : 0.01	8 : 0.01	: : 0.01	
2 : 0.18	] : 0.11	g : 0.10	b : 0.08	3 : 0.06	d : 0.06	e : 0.06	c : 0.05	h : 0.05	= : 0.03	^ : 0.03	: : 0.03	4 : 0.01	i : 0.01	8 : 0.01	o : 0.01	f : 0.01	a : 0.01	
d : 0.18	e : 0.13	b : 0.10	g : 0.10	h : 0.08	= : 0.06	f : 0.06	c : 0.05	: : 0.05	3 : 0.03	^ : 0.01	2 : 0.01	i : 0.01	8 : 0.01	7 : 0.01	o : 0.01	6 : 0.01	
d : 0.20	e : 0.11	: : 0.08	h : 0.08	g : 0.08	c : 0.06	f : 0.06	b : 0.05	= : 0.05	6 : 0.03	^ : 0.01	4 : 0.01	3 : 0.01	i : 0.01	8 : 0.01	7 : 0.01	o : 0.01	] : 0.01	E : 0.01	

#score	1031.1580543424575
#seq	59
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_transcript_m2_run1.txt

#BEAR
ffffffnnnnnffffff	chrM:4319-4542(+)$1	223	39	56	12.4145
ffffffoooooofffff	chr8:9629517-9629782(+)$1	265	121	138	9.8006
fffffffmmmmffffff	chr3:197901245-197901508(+)$1	263	228	245	9.3311
ffffffoooooofffff	chr8:9629592-9629846(+)$1	254	46	63	9.8006
bb[cccnnnnnccc]bb	chr11:65267511-65267735(+)$1	224	141	158	7.8588
ffffffmmmmfffffff	chr11:65192423-65192674(+)$1	251	178	195	8.6564
======nnnnn======	chrM:14176-14401(-)$1	225	180	197	8.1221
ffffffnnnnnffffff	chr11:65194715-65194953(+)$1	238	65	82	12.4145
ffffffnnnnnffffff	chrM:14160-14376(-)$1	216	176	193	12.4145
ffffffnnnnnffffff	chr11:62609005-62609323(-)$1	318	109	126	12.4145
fffffffmmmmffffff	chr12:53434480-53434723(+)$1	243	79	96	9.3311
ffffffnnnnnffffff	chrM:4345-4553(+)$1	208	13	30	12.4145
ffffffnnnnnffffff	chr11:65268462-65268684(+)$1	222	140	157	12.4145
ffffffnnnnnffffff	chr4:174253048-174253320(-)$1	272	107	124	12.4145
:ffffffmmmmffffff	chrM:14201-14410(-)$1	209	125	142	8.1468
ff[cccoooooocccff	chr19:34883338-34883586(+)$1	248	66	83	7.5832
:ffffffmmmmffffff	chrM:14247-14494(-)$1	247	209	226	8.1468
:ffffffmmmmffffff	chrM:14226-14447(-)$1	221	162	179	8.1468
fffffffmmmmffffff	chr19:34874534-34874809(+)$1	275	204	221	9.3311
[a[cccnnnnnccc]ae	chr5:651376-651740(+)$1	364	149	166	8.5634
[eeeeennnnneeeee]	chr5:134260996-134261230(+)$1	234	109	126	7.7848
e!!cccnnnnnccc444	chr1:569795-570084(-)$1	289	11	28	7.8003
ffff[annnnna]ffff	chr5:134260120-134260395(+)$1	275	18	35	11.0120
[a[cccnnnnnccc]a]	chr16:88584198-88584456(+)$1	258	7	24	8.7372
ffffffnnnnnffffff	chrM:4190-4428(+)$1	238	168	185	12.4145
[eeeeennnnneeeee]	chr11:65195640-65195898(+)$1	258	170	187	7.7848
ffffffnnnnnffffff	chr11:93454742-93454976(+)$1	234	78	95	12.4145
ffffffnnnnnffffff	chrM:4353-4559(+)$1	206	5	22	12.4145
ggfffffflllffffff	chr11:65192503-65192753(+)$1	250	178	195	8.7701
:ffffffmmmmffffff	chrM:14210-14418(-)$1	208	133	150	8.1468
gg[a[annnnna]a]gg	chr11:65191216-65191497(+)$1	281	127	144	8.4025

#otherMatches

#Seq PSSM
gagaauccaaaauucuc	chrM:4319-4542(+)$1	223	39	56	12.4145
ACAugggacucaucaug	chr8:9629517-9629782(+)$1	265	121	138	9.8006
UAAGACAUGUUUGUCUU	chr3:197901245-197901508(+)$1	263	228	245	9.3311
ACAugggacucaucaug	chr8:9629592-9629846(+)$1	254	46	63	9.8006
UAAUUUAAAAAAAACUA	chr11:65267511-65267735(+)$1	224	141	158	7.8588
UUAAGUUGUUGCUUGGA	chr11:65192423-65192674(+)$1	251	178	195	8.6564
UUAGUAGUGGUUACUGG	chrM:14176-14401(-)$1	225	180	197	8.1221
AGCAAGGGAGGCUUGUU	chr11:65194715-65194953(+)$1	238	65	82	12.4145
ACAUUGUUUGUUGGUGU	chrM:14160-14376(-)$1	216	176	193	12.4145
guccucuauccgaggac	chr11:62609005-62609323(-)$1	318	109	126	12.4145
UAGAGGGAAUUCCUUUU	chr12:53434480-53434723(+)$1	243	79	96	9.3311
gagaauccaaaauucuc	chrM:4345-4553(+)$1	208	13	30	12.4145
GAAUAGAUGACCUGUUU	chr11:65268462-65268684(+)$1	222	140	157	12.4145
AUGCGUGUGGAAUGUGU	chr4:174253048-174253320(-)$1	272	107	124	12.4145
GGGGUCAGGGUUGAUUC	chrM:14201-14410(-)$1	209	125	142	8.1468
CUGUCCCUGGUAGGAGG	chr19:34883338-34883586(+)$1	248	66	83	7.5832
GGGGUCAGGGUUGAUUC	chrM:14247-14494(-)$1	247	209	226	8.1468
GGGGUCAGGGUUGAUUC	chrM:14226-14447(-)$1	221	162	179	8.1468
CAGUGUUUGUCAACACU	chr19:34874534-34874809(+)$1	275	204	221	9.3311
GAGAUAUGACCUGUGUG	chr5:651376-651740(+)$1	364	149	166	8.5634
GUGGAUGAUGGAUCCGG	chr5:134260996-134261230(+)$1	234	109	126	7.7848
UAGGCUGGAGUGGUAAA	chr1:569795-570084(-)$1	289	11	28	7.8003
UGAUGGGGUGGUGGUUG	chr5:134260120-134260395(+)$1	275	18	35	11.0120
guggcugaaaggguggg	chr16:88584198-88584456(+)$1	258	7	24	8.7372
gagaauccaaaauucuc	chrM:4190-4428(+)$1	238	168	185	12.4145
CGCAGGAACGGCCUGUU	chr11:65195640-65195898(+)$1	258	170	187	7.7848
GCAUAUGUCUGgugugu	chr11:93454742-93454976(+)$1	234	78	95	12.4145
gagaauccaaaauucuc	chrM:4353-4559(+)$1	206	5	22	12.4145
ACAAACAAAAAUUGUUU	chr11:65192503-65192753(+)$1	250	178	195	8.7701
GGGGUCAGGGUUGAUUC	chrM:14210-14418(-)$1	208	133	150	8.1468
UGGGGAGUGAAUGUGCA	chr11:65191216-65191497(+)$1	281	127	144	8.4025

#DB
((((((.....))))))	chrM:4319-4542(+)$1	1	39	56	12.4145
((((((......)))))	chr8:9629517-9629782(+)$1	1	121	138	9.8006
(((((((....))))))	chr3:197901245-197901508(+)$1	1	228	245	9.3311
((((((......)))))	chr8:9629592-9629846(+)$1	1	46	63	9.8006
((.(((.....))).))	chr11:65267511-65267735(+)$1	1	141	158	7.8588
((((((....))))))(	chr11:65192423-65192674(+)$1	1	178	195	8.6564
((((((.....))))))	chrM:14176-14401(-)$1	1	180	197	8.1221
((((((.....))))))	chr11:65194715-65194953(+)$1	1	65	82	12.4145
((((((.....))))))	chrM:14160-14376(-)$1	1	176	193	12.4145
((((((.....))))))	chr11:62609005-62609323(-)$1	1	109	126	12.4145
)((((((....))))))	chr12:53434480-53434723(+)$1	1	79	96	9.3311
((((((.....))))))	chrM:4345-4553(+)$1	1	13	30	12.4145
((((((.....))))))	chr11:65268462-65268684(+)$1	1	140	157	12.4145
((((((.....))))))	chr4:174253048-174253320(-)$1	1	107	124	12.4145
.((((((....))))))	chrM:14201-14410(-)$1	1	125	142	8.1468
((.(((......)))))	chr19:34883338-34883586(+)$1	1	66	83	7.5832
.((((((....))))))	chrM:14247-14494(-)$1	1	209	226	8.1468
.((((((....))))))	chrM:14226-14447(-)$1	1	162	179	8.1468
)((((((....))))))	chr19:34874534-34874809(+)$1	1	204	221	9.3311
.(.(((.....))).))	chr5:651376-651740(+)$1	1	149	166	8.5634
.(((((.....))))).	chr5:134260996-134261230(+)$1	1	109	126	7.7848
(..(((.....)))...	chr1:569795-570084(-)$1	1	11	28	7.8003
((((.(.....).))))	chr5:134260120-134260395(+)$1	1	18	35	11.0120
.(.(((.....))).).	chr16:88584198-88584456(+)$1	1	7	24	8.7372
((((((.....))))))	chrM:4190-4428(+)$1	1	168	185	12.4145
.(((((.....))))).	chr11:65195640-65195898(+)$1	1	170	187	7.7848
((((((.....))))))	chr11:93454742-93454976(+)$1	1	78	95	12.4145
((((((.....))))))	chrM:4353-4559(+)$1	1	5	22	12.4145
))((((((...))))))	chr11:65192503-65192753(+)$1	1	178	195	8.7701
.((((((....))))))	chrM:14210-14418(-)$1	1	133	150	8.1468
((.(.(.....).).))	chr11:65191216-65191497(+)$1	1	127	144	8.4025

#PSSM
f : 0.58	: : 0.12	[ : 0.12	g : 0.06	b : 0.03	= : 0.03	e : 0.03	
f : 0.70	a : 0.06	e : 0.06	g : 0.06	b : 0.03	= : 0.03	! : 0.03	
f : 0.70	[ : 0.16	e : 0.06	= : 0.03	! : 0.03	
f : 0.70	c : 0.16	e : 0.06	= : 0.03	a : 0.03	
f : 0.67	c : 0.16	e : 0.06	[ : 0.06	= : 0.03	
f : 0.67	c : 0.16	e : 0.06	a : 0.06	= : 0.03	
n : 0.61	f : 0.25	o : 0.09	m : 0.03	
n : 0.61	m : 0.25	o : 0.09	f : 0.03	
n : 0.61	m : 0.25	o : 0.09	l : 0.03	
n : 0.61	m : 0.25	o : 0.09	l : 0.03	
n : 0.61	m : 0.22	o : 0.09	f : 0.03	l : 0.03	
f : 0.61	c : 0.12	o : 0.09	e : 0.06	a : 0.06	= : 0.03	
f : 0.67	c : 0.16	e : 0.06	] : 0.06	= : 0.03	
f : 0.70	c : 0.16	e : 0.06	= : 0.03	a : 0.03	
f : 0.70	] : 0.12	e : 0.06	= : 0.03	c : 0.03	4 : 0.03	
f : 0.74	a : 0.06	e : 0.06	b : 0.03	= : 0.03	4 : 0.03	g : 0.03	
f : 0.74	] : 0.09	b : 0.03	= : 0.03	e : 0.03	4 : 0.03	g : 0.03	

#score	305.40413544742563
#seq	31
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_UTR_m3_run1.txt

#BEAR
eeeee$$$$$a!!ddddnnnnndddd22a22eeeeeddd	chr16:70584433-70584690(+)$1	257	142	181	12.5283
[ggggggg####eeeeennnnneeeee22gggggggccc	chr12:121768938-121769182(-)$1	244	57	96	14.3996
dd$$$$$===========mmmm===========4444dd	chr2:64112619-64112909(+)$1	290	68	107	13.6759
gg####ggggggg!!cccooooooccc22ggggggg]gg	chr7:150773780-150774043(-)$1	263	19	58	14.2824
========ccc[eeeeennnnneeeeeccc333======	chr7:5778838-5779095(-)$1	257	99	138	14.8374
dd[ggggggg"""ddddllldddd4444ggggggg]ddd	chr7:11068211-11068464(+)$1	253	136	175	12.7898
::ggggggg[ccc[cccnnnnncccccc]ggggggghhh	chr4:83346716-83346938(-)$1	222	12	51	13.1882
ccggggggg"""ccc[aooooooa]ccc333ggggggg2	chr4:146033284-146033548(+)$1	264	42	81	16.0848
dddd!!ggggggg[cccmmmmccc22ggggggg]ddddd	chr7:148514578-148514831(-)$1	253	181	220	12.2946
ccc!!dddd"""cccbbnnnnnbb22ccc333dddd22c	chr1:153949345-153949613(-)$1	268	123	162	14.5498
gg[a[eeeee"""ddddnnnnndddd22eeeee]a]ggg	chr6:31500553-31500804(-)$1	251	193	232	12.7686
c$$$$$dddd"""ddddnnnnndddd333dddd4444cc	chr6:24173431-24173688(-)$1	257	151	190	12.9338
cccdddd==========lll==========4444dddd]	chr13:37539699-37539974(-)$1	275	153	192	14.5270
ddd!!ccc!!gggggggnnnnnggggggg22ccc]dddd	chr7:89793677-89793937(+)$1	260	48	87	15.4868
"""ccc!!dddd"""bbnnnnnbb333dddd]ccc333d	chr14:32031172-32031419(+)$1	247	171	210	14.1698
ddd!!ccc"""aeeeeennnnneeeee]a333ccc]ddd	chr17:58012406-58012692(+)$1	286	136	175	14.8504
cc[ccc[iiiiiiiiiooooooiiiiiiiiiccc]ccc0	chr5:64920200-64920450(-)$1	250	48	87	15.0835
[gggggggccc####cccmmmmcccccc]ggggggg22g	chr16:68362840-68363124(+)$1	284	127	166	12.7224
fff"""ccc[ccc!!ccclllcccccc]ccc333fffff	chr1:29486878-29487143(-)$1	265	189	228	12.8508
gggggggeeeee"""cccooooooccc4444eeeee333	chr3:138433415-138433671(-)$1	256	136	175	13.0995
ee[dddd[a[ggggggglllggggggg]a333ddddeee	chr14:75302357-75302621(+)$1	264	145	184	12.9589
""ggggggg"""ddddoooooodddd22gggggggdddd	chr2:198284830-198285069(-)$1	239	152	191	13.5189
gg[ccc!!gggggggrrrrrrrrrggggggg333ccc]g	chr6:82950379-82950681(-)$1	302	229	268	13.0757
+++ccc[ggggggg[ccclllccc]gggggggccceeee	chr14:69584862-69585115(-)$1	253	202	241	11.9178
e[dddd"""dddd!!bbnnnnnbb22dddd]ddddeeee	chr3:183854471-183854734(+)$1	263	222	261	11.8646
dd[bb[ggggggg!!bbnnnnnbb]gggggggbbdddd]	chr2:175957183-175957454(-)$1	271	194	233	14.4499
ff[gggggggaffffffnnnnnffffff]a]ggggggg]	chr11:233873-234132(-)$1	259	120	159	13.9775
dddd####bbadddd[aooooooa]dddd]a]bb4444d	chr14:23947089-23947357(+)$1	268	8	47	12.1457
!!ddddbb"""ccc[bboooooobbccc333bb]ddddg	chr11:73587472-73587750(-)$1	278	147	186	13.4253
ggggg!!==========nnnnn==========]gggggg	chr5:133509300-133509570(-)$1	270	130	169	17.0848
ee[bb"""iiiiiiiiillliiiiiiiii]bbeeeeedd	chr10:113915622-113915877(-)$1	255	111	150	13.1268
cc[ggggggg[ffffffmmmmffffff22gggggggccc	chr14:23794958-23795232(+)$1	274	95	134	11.4227
ccc[ffffff####cccnnnnnccc333ffffffccc22	chr16:30093955-30094201(+)$1	246	109	148	14.0186
ddd[bb"""gggggggooooooggggggg333bbdddd]	chr6:135300253-135300519(-)$1	266	28	67	14.4931
ccc[=============nnnnn=============]ccc	chr3:140689653-140689922(+)$1	269	198	237	17.2040
""ffffff####ccc[aooooooa]ccc333ffffff44	chr14:23794750-23794965(+)$1	215	114	153	14.2758
eeeeebb[ccc"""cccnnnnnccccccbb]eeeee]cc	chrX:47511408-47511664(-)$1	256	196	235	13.3801
d!!ccc[bb[gggggggnnnnnggggggg]bb]ccc333	chr2:85280604-85280877(+)$1	273	94	133	15.4220
fffff[bb####cccbboooooobb]ccc333bb]ffff	chr12:133617568-133617841(+)$1	273	213	252	12.9132
ccccc!!gggggggrrrrrrrrrggggggg]ccc]ccc2	chr5:179045163-179045430(-)$1	267	181	220	12.6887
eeeeggggggggggggggmmmmggggggg]ggggggg22	chr11:30352226-30352498(+)$1	272	11	50	12.2001
d!!bb!!a[iiiiiiiiillliiiiiiiii]a]bb22dd	chr7:102715490-102715750(+)$1	260	194	233	13.5682
:dddd!!ddddccc[bbnnnnnbb]ccc]dddd4444dd	chr3:185644364-185644635(-)$1	271	153	192	12.1832
iii####ggggggg[bblllbb]ggggggg22iiiiiii	chr17:46053117-46053338(+)$1	221	44	83	13.3569
###gggggggccc[cccrrrrrrrrrccc]ccc22gggg	chr20:62890000-62890274(+)$1	274	13	52	11.5161
eeeee"""ccc"""cccooooooccc333ccc]eeeee:	chr2:234178534-234178784(+)$1	250	174	213	13.5625
e"""ccc"""gggggggnnnnnggggggg22ccc333ee	chr7:148516021-148516268(-)$1	247	46	85	16.1824
ddccc####gggggggooooooggggggg4444ccc333	chr7:6154847-6155102(+)$1	255	131	170	15.6020
bb[bb[ccceeeee[bboooooobb]eeeee22ccc333	chr3:9516638-9516896(+)$1	258	195	234	11.6182
cc[ccc[ccc[fffffflllffffffccc]ccc]cccgg	chr14:31177062-31177360(+)$1	298	46	85	12.2363
a[ccc[dddda[eeeeeooooooeeeee]a]dddd]ccc	chr5:77298707-77299002(-)$1	295	223	262	12.3637
!!dddddddd[dddd[annnnna]dddd]dddd]dddd]	chr3:184100056-184100323(+)$1	267	83	122	11.7554
=========####acccnnnnnccc]a4444========	chr1:8075613-8075878(-)$1	265	38	77	16.7852
cc"""eeeee!!ggggggglllggggggg22eeeee22c	chr7:23236176-23236444(+)$1	268	182	221	12.3765
cc[ccc[bb[ccc[cccnnnnnccc]cccbb]ccc]ccc	chr2:242611464-242611754(+)$1	290	127	166	14.7908

#otherMatches

#Seq PSSM
CCACAGGUGUGUACCUAACUGCUAGGGUCGAUGUGGGGU	chr16:70584433-70584690(+)$1	257	142	181	12.5283
AGUUUUGUUCACGGGUUGAAUUGGCCUUCACAAGGCCCC	chr12:121768938-121769182(-)$1	244	57	96	14.3996
GUCAAUAUUGAAAAAGAACUUUUUUUUUUUUAAAGGUAC	chr2:64112619-64112909(+)$1	290	68	107	13.6759
CCUGAUGGGCUACCAGCUCCUGCCGGUGAGUGGCCCUGG	chr7:150773780-150774043(-)$1	263	19	58	14.2824
UAUUUGUUUCUAGGAAGCAAGAUUUCCAGAUGUAGCAAA	chr7:5778838-5779095(-)$1	257	99	138	14.8374
GGGUUUGCAUUAGCUGUGAUGCAGGGAUGUGCAGAGCCU	chr7:11068211-11068464(+)$1	253	136	175	12.7898
ACAUUUUAGAACUAUUAACAGGUAAAGUACUGAAAUGGG	chr4:83346716-83346938(-)$1	222	12	51	13.1882
GUAUGUAAGGUAGAAUGUCUUGUCUUUCAAACUUAUAUU	chr4:146033284-146033548(+)$1	264	42	81	16.0848
CUGUGAGUAGUUUUGUUGGAAAAUGUGAACUACGAUGGG	chr7:148514578-148514831(-)$1	253	181	220	12.2946
GCCAAGCAGAGGCUCCCGUGCAGGAAGAGAAGCUGUCAG	chr1:153949345-153949613(-)$1	268	123	162	14.5498
CAACGAGAAGAACCGGAAGCUCUUUGACCUUCUGGAUGU	chr6:31500553-31500804(-)$1	251	193	232	12.7686
GCACUUAAUAAUACUAUAGAAAAUAGAUGUGUUUUUUCU	chr6:24173431-24173688(-)$1	257	151	190	12.9338
CUGGUGUGGUUCCUUUGUGUCAAAGGAAUCAGGGACACA	chr13:37539699-37539974(-)$1	275	153	192	14.5270
GAUGAGGUAGGAUGGGAUAAACUCUUAUUGAACCAAUCU	chr7:89793677-89793937(+)$1	260	48	87	15.4868
AGAAACCGAUAGAAGGUGUUAAACAAGUUAUAGUUGUGG	chr14:32031172-32031419(+)$1	247	171	210	14.1698
UCUACUCUUAGCCCCCAUUCACUGGGGAGAAUAGAAAGA	chr17:58012406-58012692(+)$1	286	136	175	14.8504
AAGGAUCUGGAGUUUUCACCCCAAAACUUUAAUCGUUUU	chr5:64920200-64920450(-)$1	250	48	87	15.0835
GGUUUUCAAGCCUAUGGCUGAUGCUGCUGUGAAGAUUGU	chr16:68362840-68363124(+)$1	284	127	166	12.7224
UGGUGAGCGAGUAAUUGUUGAGCAUGCCCGCGGCCCACG	chr1:29486878-29487143(-)$1	265	189	228	12.8508
UGGUACUGAGCUCCUGUGUAAAACCAUCGUAAGCUCAGA	chr3:138433415-138433671(-)$1	256	136	175	13.0995
GCCAAGGCCUCGCGGAGCUUCUUUGUGUGUCACCUUGCU	chr14:75302357-75302621(+)$1	264	145	184	12.9589
ACGCAAAGGGUUAAAGGUUUUACUUUUACUUUUGUUUUG	chr2:198284830-198285069(-)$1	239	152	191	13.5189
GAAUUUUUUUAAAUGAAGAACUUGUAUUUGAUAUGAACU	chr6:82950379-82950681(-)$1	302	229	268	13.0757
AGUUCCUCAGAUGAUGGCCGGGUUCUCAUUUGGGACAUU	chr14:69584862-69585115(-)$1	253	202	241	11.9178
GUAUCUGUCUGUCUUGGGUUUUCUGUGACAAAGAUUAAA	chr3:183854471-183854734(+)$1	263	222	261	11.8646
gccaguggcaguacagaucauuucauacugcccugccaa	chr2:175957183-175957454(-)$1	271	194	233	14.4499
CUUAACAGUUCGUGUUUAGUAGGAGCACAGUAGCUGUUU	chr11:233873-234132(-)$1	259	120	159	13.9775
AGGGUACUGCCUAGGAGACCCCACCCCUGUGAGCCCUUC	chr14:23947089-23947357(+)$1	268	8	47	12.1457
AGCUGCCAACCAUCUAGCCUACCCUGAUCUCUGAGCAGG	chr11:73587472-73587750(-)$1	278	147	186	13.4253
GUCUGAAUUAGUGAGGGUCGUUCUCUCAUUAAAUGGAUA	chr5:133509300-133509570(-)$1	270	130	169	17.0848
AGACUCCUUGGGCCUUUGCUGGAGGCCUACAGCUCUGCU	chr10:113915622-113915877(-)$1	255	111	150	13.1268
AGUGUCUUUCUUUGCAGGUUUCUGUAGCCGGAAGAUCUC	chr14:23794958-23795232(+)$1	274	95	134	11.4227
AGGUAGGUGGCGACGUCCCUGAGACCAACUACCUCUUCA	chr16:30093955-30094201(+)$1	246	109	148	14.0186
AGCACAAAUCAGCCAAACUCUGUUGGUUGUUAUGGUUUG	chr6:135300253-135300519(-)$1	266	28	67	14.4931
AAAUAAAAUUGGUUAAAGUGGAUUUAACUAAUUUUUUUU	chr3:140689653-140689922(+)$1	269	198	237	17.2040
CUGGAAGGACACCAAACUGUUCUGCUUGUUACCUUCCCU	chr14:23794750-23794965(+)$1	215	114	153	14.2758
UCACCCCACUACCAGACUCUGUGUUUAGGGUGGUGACCU	chrX:47511408-47511664(-)$1	256	196	235	13.3801
UUAACUAAUUUUUACUUCUAGCAGGUAAAUGUAGGUAGC	chr2:85280604-85280877(+)$1	273	94	133	15.4220
GUGAAUUCCAAGUUCCUAGCAAGAGAGAAAGAGAUUUCA	chr12:133617568-133617841(+)$1	273	213	252	12.9132
GCAGCGGCCAGGUCCUUAUGACAGACCUGGGGCUGGUAG	chr5:179045163-179045430(-)$1	267	181	220	12.6887
CAGAUGUUUUCGUGAAGUUCUGACUUUACAGGGAACGCU	chr11:30352226-30352498(+)$1	272	11	50	12.2001
CUGGCCCGGCGCUGCGGCUCUGCCGCGGCGGCAGCAUGG	chr7:102715490-102715750(+)$1	260	194	233	13.5682
CGGGGAAAUCUGCAAGGCAUACCCCUGCAAGGUCUCGCU	chr3:185644364-185644635(-)$1	271	153	192	12.1832
GUGGCCCAGGCCAAAGCCCAGUGUUGGCCUUACGCAUGG	chr17:46053117-46053338(+)$1	221	44	83	13.3569
CGAUCCUCAUUCUACUGUUAGAAAUCCAGAGGAAUGUGA	chr20:62890000-62890274(+)$1	274	13	52	11.5161
GAACAGUAAGUAAAGAUAAAUGAAUCAAAACUGUGUUUC	chr2:234178534-234178784(+)$1	250	174	213	13.5625
AAAAUAUGAGGUAGAAAAGUUGUUUUUACGGGUACUCUC	chr7:148516021-148516268(-)$1	247	46	85	16.1824
ACAGAAAGUUCUUUUCCCAUCUGAGAAGAUUUGUCUUAA	chr7:6154847-6155102(+)$1	255	131	170	15.6020
CUACCAGGUGAGAUGAGAAAUUGCUGGUCUCUAGCCAUA	chr3:9516638-9516896(+)$1	258	195	234	11.6182
GUGUGUAAUCAGGUAAAUAUUUUAUCGAUAACAGAUUGG	chr14:31177062-31177360(+)$1	298	46	85	12.2363
GUGAUUGGCUCUGUUCUGCUGCGGGAACUGAAGCCUGUC	chr5:77298707-77299002(-)$1	295	223	262	12.3637
UGUCUGAGCGUAGGGCCUUCUUGUCUCUCUGCUCCAGGU	chr3:184100056-184100323(+)$1	267	83	122	11.7554
CUCUGUUAGCUUUGCUGUAAUUUAGACUGUCCUAAUGGA	chr1:8075613-8075878(-)$1	265	38	77	16.7852
CUAAAUAUAUCAACUAAAGUAGCUUUGGUGAGUAUGGGA	chr7:23236176-23236444(+)$1	268	182	221	12.3765
CCUGUUCCUUCUAGAUUCUUCUGAUGUAGAGCGACUGGA	chr2:242611464-242611754(+)$1	290	127	166	14.7908

#DB
(((((.....(..((((.....))))..)..))))))))	chr16:70584433-70584690(+)$1	1	142	181	12.5283
.(((((((....(((((.....)))))..))))))))))	chr12:121768938-121769182(-)$1	1	57	96	14.3996
((.....(((((((((((....)))))))))))....))	chr2:64112619-64112909(+)$1	1	68	107	13.6759
((....(((((((..(((......)))..))))))).))	chr7:150773780-150774043(-)$1	1	19	58	14.2824
(((((((((((.(((((.....))))))))...))))))	chr7:5778838-5779095(-)$1	1	99	138	14.8374
((.(((((((...((((...))))....))))))).)))	chr7:11068211-11068464(+)$1	1	136	175	12.7898
..(((((((.(((.(((.....)))))).)))))))(((	chr4:83346716-83346938(-)$1	1	12	51	13.1882
(((((((((...(((.(......).)))...))))))).	chr4:146033284-146033548(+)$1	1	42	81	16.0848
((((..(((((((.(((....)))..))))))).)))))	chr7:148514578-148514831(-)$1	1	181	220	12.2946
(((..((((...(((((.....))..)))...))))..)	chr1:153949345-153949613(-)$1	1	123	162	14.5498
((.(.(((((...((((.....))))..))))).).)))	chr6:31500553-31500804(-)$1	1	193	232	12.7686
(.....((((...((((.....))))...))))....))	chr6:24173431-24173688(-)$1	1	151	190	12.9338
(((((((((((((((((...))))))))))....)))).	chr13:37539699-37539974(-)$1	1	153	192	14.5270
(((..(((..(((((((.....)))))))..))).))))	chr7:89793677-89793937(+)$1	1	48	87	15.4868
...(((..((((...((.....))...)))).)))...)	chr14:32031172-32031419(+)$1	1	171	210	14.1698
(((..(((...((((((.....))))).)...))).)))	chr17:58012406-58012692(+)$1	1	136	175	14.8504
((.(((.(((((((((......)))))))))))).))).	chr5:64920200-64920450(-)$1	1	48	87	15.0835
.((((((((((....(((....)))))).)))))))..)	chr16:68362840-68363124(+)$1	1	127	166	12.7224
(((...(((.(((..(((...)))))).)))...)))))	chr1:29486878-29487143(-)$1	1	189	228	12.8508
((((((((((((...(((......)))....)))))...	chr3:138433415-138433671(-)$1	1	136	175	13.0995
((.((((.(.(((((((...))))))).)...)))))))	chr14:75302357-75302621(+)$1	1	145	184	12.9589
..(((((((...((((......))))..)))))))))))	chr2:198284830-198285069(-)$1	1	152	191	13.5189
((.(((..(((((((.........)))))))...))).)	chr6:82950379-82950681(-)$1	1	229	268	13.0757
...(((.(((((((.(((...))).))))))))))))))	chr14:69584862-69585115(-)$1	1	202	241	11.9178
(.((((...((((..((.....))..)))).))))))))	chr3:183854471-183854734(+)$1	1	222	261	11.8646
((.((.(((((((..((.....)).))))))))))))).	chr2:175957183-175957454(-)$1	1	194	233	14.4499
((.((((((((((((((.....)))))).).))))))).	chr11:233873-234132(-)$1	1	120	159	13.9775
((((....(((((((.(......).)))).).))....)	chr14:23947089-23947357(+)$1	1	8	47	12.1457
..((((((...(((.((......)))))...)).)))))	chr11:73587472-73587750(-)$1	1	147	186	13.4253
(((((..((((((((((.....)))))))))).))))))	chr5:133509300-133509570(-)$1	1	130	169	17.0848
((.((...(((((((((...))))))))).)))))))))	chr10:113915622-113915877(-)$1	1	111	150	13.1268
((.(((((((.((((((....))))))..))))))))))	chr14:23794958-23795232(+)$1	1	95	134	11.4227
(((.((((((....(((.....)))...)))))))))..	chr16:30093955-30094201(+)$1	1	109	148	14.0186
(((.((...(((((((......)))))))...)))))).	chr6:135300253-135300519(-)$1	1	28	67	14.4931
(((.(((((((((((((.....))))))))))))).)))	chr3:140689653-140689922(+)$1	1	198	237	17.2040
..((((((....(((.(......).)))...))))))..	chr14:23794750-23794965(+)$1	1	114	153	14.2758
(((((((.(((...(((.....)))))))).))))).))	chrX:47511408-47511664(-)$1	1	196	235	13.3801
(..(((.((.(((((((.....))))))).)).)))...	chr2:85280604-85280877(+)$1	1	94	133	15.4220
(((((.((....(((((......)).)))...)).))))	chr12:133617568-133617841(+)$1	1	213	252	12.9132
(((((..(((((((.........))))))).))).))).	chr5:179045163-179045430(-)$1	1	181	220	12.6887
((((((((((((((((((....))))))).)))))))..	chr11:30352226-30352498(+)$1	1	11	50	12.2001
(..((..(.(((((((((...))))))))).).))..))	chr7:102715490-102715750(+)$1	1	194	233	13.5682
.((((..(((((((.((.....)).))).))))....))	chr3:185644364-185644635(-)$1	1	153	192	12.1832
(((....(((((((.((...)).)))))))..)))))))	chr17:46053117-46053338(+)$1	1	44	83	13.3569
...((((((((((.(((.........))).)))..))))	chr20:62890000-62890274(+)$1	1	13	52	11.5161
(((((...(((...(((......)))...))).))))).	chr2:234178534-234178784(+)$1	1	174	213	13.5625
(...(((...(((((((.....)))))))..)))...))	chr7:148516021-148516268(-)$1	1	46	85	16.1824
(((((....(((((((......)))))))....)))...	chr7:6154847-6155102(+)$1	1	131	170	15.6020
((.((.((((((((.((......)).)))))..)))...	chr3:9516638-9516896(+)$1	1	195	234	11.6182
((.(((.(((.((((((...))))))))).))).)))((	chr14:31177062-31177360(+)$1	1	46	85	12.2363
(.(((.(((((.(((((......))))).).)))).)))	chr5:77298707-77299002(-)$1	1	223	262	12.3637
..((((((((.((((.(.....).)))).)))).)))).	chr3:184100056-184100323(+)$1	1	83	122	11.7554
(((((((((....((((.....))).)....))))))))	chr1:8075613-8075878(-)$1	1	38	77	16.7852
((...(((((..(((((((...)))))))..)))))..)	chr7:23236176-23236444(+)$1	1	182	221	12.3765
((.(((.((.(((.(((.....))).))))).))).)))	chr2:242611464-242611754(+)$1	1	127	166	14.7908

#PSSM
c : 0.21	d : 0.20	e : 0.14	g : 0.09	" : 0.05	f : 0.05	[ : 0.03	= : 0.03	: : 0.03	! : 0.03	+ : 0.01	i : 0.01	# : 0.01	b : 0.01	a : 0.01	
c : 0.20	d : 0.18	g : 0.12	e : 0.10	" : 0.07	! : 0.07	f : 0.05	= : 0.03	[ : 0.03	: : 0.01	$ : 0.01	+ : 0.01	i : 0.01	# : 0.01	b : 0.01	
[ : 0.21	d : 0.16	g : 0.12	c : 0.12	e : 0.07	" : 0.05	f : 0.05	$ : 0.03	# : 0.03	= : 0.03	! : 0.03	+ : 0.01	i : 0.01	
g : 0.20	c : 0.18	d : 0.14	e : 0.07	b : 0.07	! : 0.05	" : 0.05	[ : 0.05	$ : 0.03	# : 0.03	= : 0.03	f : 0.03	a : 0.01	
g : 0.21	c : 0.20	d : 0.10	b : 0.09	! : 0.07	e : 0.05	# : 0.05	= : 0.05	f : 0.05	$ : 0.03	" : 0.03	[ : 0.01	
g : 0.20	c : 0.18	d : 0.10	! : 0.09	# : 0.07	[ : 0.07	$ : 0.05	= : 0.05	" : 0.05	e : 0.03	f : 0.03	b : 0.03	
g : 0.25	d : 0.10	! : 0.10	c : 0.09	[ : 0.09	" : 0.07	= : 0.05	# : 0.05	b : 0.05	$ : 0.03	e : 0.03	f : 0.03	
g : 0.29	= : 0.10	d : 0.09	c : 0.09	" : 0.09	b : 0.07	e : 0.05	! : 0.03	[ : 0.03	# : 0.03	f : 0.03	$ : 0.01	i : 0.01	a : 0.01	
g : 0.27	c : 0.12	d : 0.10	= : 0.09	" : 0.09	# : 0.07	e : 0.05	b : 0.05	i : 0.03	$ : 0.01	! : 0.01	a : 0.01	f : 0.01	[ : 0.01	
g : 0.25	" : 0.10	d : 0.10	c : 0.09	[ : 0.09	# : 0.07	= : 0.07	e : 0.07	i : 0.05	$ : 0.01	! : 0.01	b : 0.01	f : 0.01	
g : 0.25	c : 0.14	" : 0.14	# : 0.09	a : 0.07	= : 0.07	d : 0.05	i : 0.05	[ : 0.05	e : 0.03	! : 0.01	
g : 0.25	" : 0.14	# : 0.10	c : 0.10	= : 0.07	d : 0.07	i : 0.05	f : 0.05	! : 0.03	[ : 0.03	e : 0.03	a : 0.01	
g : 0.27	c : 0.18	" : 0.12	e : 0.09	= : 0.07	d : 0.07	i : 0.05	# : 0.05	f : 0.05	! : 0.01	
g : 0.21	d : 0.12	c : 0.10	e : 0.09	= : 0.07	! : 0.07	[ : 0.07	" : 0.07	i : 0.05	f : 0.05	# : 0.03	a : 0.01	
c : 0.21	g : 0.16	d : 0.12	[ : 0.09	e : 0.07	= : 0.07	! : 0.07	i : 0.05	f : 0.05	" : 0.03	# : 0.01	r : 0.01	
c : 0.23	b : 0.16	g : 0.14	d : 0.09	e : 0.07	= : 0.07	[ : 0.07	i : 0.05	f : 0.05	r : 0.03	
c : 0.23	b : 0.16	g : 0.10	d : 0.07	e : 0.07	= : 0.07	a : 0.07	o : 0.07	f : 0.05	r : 0.03	i : 0.03	
n : 0.41	o : 0.21	l : 0.10	c : 0.09	r : 0.05	m : 0.03	g : 0.03	= : 0.01	i : 0.01	
n : 0.41	o : 0.25	l : 0.16	m : 0.09	r : 0.05	g : 0.01	
n : 0.41	o : 0.25	l : 0.18	m : 0.09	r : 0.05	
n : 0.41	o : 0.25	m : 0.09	l : 0.07	r : 0.05	d : 0.01	= : 0.01	g : 0.01	i : 0.01	b : 0.01	f : 0.01	
n : 0.41	o : 0.25	m : 0.05	c : 0.05	r : 0.05	i : 0.03	f : 0.03	d : 0.01	= : 0.01	g : 0.01	b : 0.01	l : 0.01	
o : 0.18	c : 0.16	g : 0.14	d : 0.09	b : 0.09	= : 0.07	e : 0.05	i : 0.05	r : 0.05	f : 0.05	] : 0.01	a : 0.01	
c : 0.18	g : 0.18	b : 0.14	d : 0.09	e : 0.07	= : 0.07	a : 0.05	i : 0.05	f : 0.05	o : 0.03	r : 0.03	] : 0.01	
g : 0.20	c : 0.18	] : 0.10	d : 0.09	e : 0.07	= : 0.07	2 : 0.05	i : 0.05	f : 0.05	b : 0.05	4 : 0.01	3 : 0.01	r : 0.01	
g : 0.23	c : 0.20	d : 0.10	e : 0.07	= : 0.07	] : 0.07	2 : 0.05	i : 0.05	f : 0.05	3 : 0.03	4 : 0.01	r : 0.01	
c : 0.27	g : 0.25	e : 0.09	= : 0.07	3 : 0.07	2 : 0.05	i : 0.05	d : 0.05	f : 0.03	4 : 0.01	a : 0.01	
c : 0.23	g : 0.23	2 : 0.10	= : 0.07	d : 0.07	4 : 0.05	3 : 0.05	] : 0.05	i : 0.05	e : 0.03	f : 0.01	
g : 0.27	c : 0.12	] : 0.10	3 : 0.09	= : 0.07	a : 0.05	2 : 0.05	d : 0.05	i : 0.05	e : 0.03	4 : 0.03	f : 0.01	b : 0.01	
g : 0.23	3 : 0.14	] : 0.10	d : 0.09	2 : 0.07	= : 0.07	c : 0.05	4 : 0.05	e : 0.03	i : 0.03	a : 0.03	b : 0.03	f : 0.01	
g : 0.21	3 : 0.16	] : 0.10	2 : 0.09	d : 0.07	4 : 0.07	c : 0.07	= : 0.05	b : 0.05	e : 0.03	i : 0.01	a : 0.01	f : 0.01	
g : 0.23	3 : 0.14	c : 0.12	e : 0.09	d : 0.09	= : 0.07	] : 0.05	b : 0.05	4 : 0.03	f : 0.03	2 : 0.03	a : 0.01	
g : 0.20	c : 0.18	d : 0.12	e : 0.10	b : 0.09	] : 0.07	= : 0.05	3 : 0.05	4 : 0.03	f : 0.03	i : 0.01	2 : 0.01	
g : 0.20	c : 0.20	e : 0.10	] : 0.09	b : 0.09	4 : 0.07	d : 0.07	= : 0.05	3 : 0.03	f : 0.03	i : 0.01	2 : 0.01	
g : 0.20	d : 0.18	c : 0.18	e : 0.10	4 : 0.07	] : 0.07	= : 0.05	f : 0.03	a : 0.01	b : 0.01	i : 0.01	2 : 0.01	3 : 0.01	
g : 0.18	d : 0.18	e : 0.14	c : 0.14	] : 0.10	4 : 0.07	f : 0.05	= : 0.03	3 : 0.03	2 : 0.01	i : 0.01	
d : 0.20	c : 0.18	g : 0.10	3 : 0.10	e : 0.09	4 : 0.07	2 : 0.07	f : 0.05	] : 0.03	= : 0.03	h : 0.01	i : 0.01	
d : 0.27	c : 0.16	g : 0.12	2 : 0.09	3 : 0.09	e : 0.09	= : 0.03	f : 0.03	4 : 0.03	h : 0.01	] : 0.01	i : 0.01	
d : 0.21	c : 0.16	g : 0.14	] : 0.09	2 : 0.07	3 : 0.07	e : 0.07	= : 0.03	f : 0.03	h : 0.01	0 : 0.01	4 : 0.01	i : 0.01	: : 0.01	

#score	750.5874634367365
#seq	55
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_transcript_m1_run2.txt

#BEAR
$$$$$bbuuuuuuuuuuuubb3	chr6:31636775-31637002(+)$1	227	184	206	21.2603
%%%dddduuuuuuuuuuuuddd	chr11:130011310-130011564(+)$1	254	27	49	20.7609
fff[cccvvvvvvvvvvvvvcc	chr21:33038661-33038877(+)$1	216	74	96	21.9120
""ddddwwwwwwwwwwwwwwdd	chr1:245018768-245019011(-)$1	243	16	38	21.9670
dddd[bbtttttttttttbbdd	chr16:30080038-30080311(+)$1	273	43	65	20.1783
c[eeeeettttttttttteeee	chr20:17640718-17641026(-)$1	308	207	229	20.9175
d[eeeeewwwwwwwwwwwwwwe	chr2:233422534-233422804(+)$1	270	91	113	21.6899
hhhhhhhuuuuuuuuuuuuhhh	chr9:128000803-128001060(-)$1	257	176	198	20.2705
b[eeeeeuuuuuuuuuuuueee	chr7:140706132-140706438(-)$1	306	190	212	22.6858
####cccuuuuuuuuuuuuccc	chr19:10260507-10260743(-)$1	236	36	58	22.8070
gg[ddddtttttttttttdddd	chr12:49230458-49230679(-)$1	221	159	181	20.3428
!!ddddxxxxxxxxxxxxxxxd	chr2:55461154-55461359(+)$1	205	159	181	18.4272
!gggggggtttttttttttggg	chr6:26056001-26056256(-)$1	255	87	109	20.3359
!!cccxxxxxxxxxxxxxxxcc	chr1:32502478-32502740(+)$1	262	163	185	18.2780
ffffffwwwwwwwwwwwwwwff	chr2:198361786-198362109(-)$1	323	35	57	20.7180
hhhhhhhuuuuuuuuuuuuhhh	chr2:86386567-86386863(-)$1	296	12	34	20.2705
FFeeeeettttttttttteeee	chrX:70517637-70517858(+)$1	221	66	88	19.7015
dddd[bbuuuuuuuuuuuubb]	chr9:131590910-131591221(-)$1	311	116	138	21.9023
!!eeeeexxxxxxxxxxxxxxx	chr1:153964043-153964252(+)$1	209	74	96	18.1382
:ffffffvvvvvvvvvvvvvff	chr9:117359851-117360165(+)$1	314	257	279	20.4787
beeeeevvvvvvvvvvvvveee	chr8:144997932-144998188(-)$1	256	159	181	21.6733
eeeeeeeuuuuuuuuuuuueee	chr11:62484500-62484762(-)$1	262	152	174	22.2008
c"""cccuuuuuuuuuuuuccc	chr15:43814829-43815167(+)$1	338	182	204	22.7595
ffddddvvvvvvvvvvvvvddd	chr1:109770920-109771153(+)$1	233	174	196	21.3501
!!eeeeewwwwwwwwwwwwwwe	chr3:10167214-10167485(+)$1	271	226	248	21.9823
:eeeeevvvvvvvvvvvvveee	chr5:72798211-72798506(+)$1	295	159	181	21.0094
D:ddddvvvvvvvvvvvvvddd	chr1:229462496-229462849(-)$1	353	150	172	19.7992
b[ffffffvvvvvvvvvvvvvf	chr10:103557801-103558012(-)$1	211	142	164	20.0372
b[fffffftttttttttttfff	chr19:50001171-50001399(+)$1	228	110	132	19.9237
b[cccwwwwwwwwwwwwwwccc	chr19:10262004-10262272(-)$1	268	122	144	21.2008
ffffyyyyyyyyyyyyyyyyff	chr6:33366000-33366264(+)$1	264	237	259	19.6609
ddd!!bbvvvvvvvvvvvvvbb	chr2:232325172-232325375(-)$1	203	134	156	21.5651
!!dddd[attttttttttta]d	chr3:133305343-133305643(+)$1	300	223	245	21.7489
dddd[bbvvvvvvvvvvvvvbb	chr10:52103471-52103841(-)$1	370	87	109	21.5510
""ddddwwwwwwwwwwwwwwdd	chr6:33243507-33243760(+)$1	253	96	118	21.9670
:bb[cccwwwwwwwwwwwwwwc	chr1:155734939-155735209(-)$1	270	44	66	20.2723
##bb[bbwwwwwwwwwwwwwwb	chr16:1822136-1822507(-)$1	371	150	172	20.9896
hheeeeeyyyyyyyyyyyyyyy	chr19:8532320-8532564(+)$1	244	74	96	20.2626
:eeeeevvvvvvvvvvvvveee	chr2:74362597-74362857(-)$1	260	29	51	21.0094
dd!!cccuuuuuuuuuuuuccc	chr1:113191943-113192192(+)$1	249	203	225	22.4968
dddd!!bbtttttttttttbb2	chrM:1380-1601(+)$1	221	83	105	20.0801
b[eeeeeuuuuuuuuuuuueee	chr1:156104537-156104815(+)$1	278	62	84	22.6858
e!!cccyyyyyyyyyyyyyyyy	chr12:118821713-118821975(+)$1	262	75	97	21.0102
ggggggwwwwwwwwwwwwwwgg	chr11:32611057-32611288(+)$1	231	157	179	21.4390
%%cccyyyyyyyyyyyyyyyyc	chrM:1401-1615(+)$1	214	112	134	20.0957
hhhhhhhuuuuuuuuuuuuhhh	chr2:38977055-38977322(-)$1	267	41	63	20.2705
b!!ddddtttttttttttdddd	chr4:6642558-6642834(+)$1	276	206	228	20.6455
bccc[ccctttttttttttccc	chr5:132203145-132203452(+)$1	307	106	128	21.0219
ffff[bbwwwwwwwwwwwwwwb	chr11:290480-290726(+)$1	246	182	204	20.7575
ddd[a[bbtttttttttttbb]	chr9:33276353-33276652(+)$1	299	121	143	20.0621
$$bb[ddddtttttttttttdd	chr20:62624693-62624937(+)$1	244	99	121	18.5204
iiiii[avvvvvvvvvvvvvai	chr2:172582093-172582324(+)$1	231	142	164	22.2790
"""dddduuuuuuuuuuuuddd	chr7:99697240-99697469(-)$1	229	40	62	22.5475
ff"""bbyyyyyyyyyyyyyyy	chr15:60644472-60644776(-)$1	304	11	33	20.1188
b[eeeeettttttttttteeee	chr21:35275738-35276010(-)$1	272	219	241	20.8750
ffffffwwwwwwwwwwwwwwff	chr2:232326572-232326822(-)$1	250	202	224	20.7180
##ddddyyyyyyyyyyyyyyyy	chr19:49994611-49994904(+)$1	293	20	42	21.1253
eeeeewwwwwwwwwwwwwweee	chr1:38168823-38169045(+)$1	222	80	102	20.6691
%%cccyyyyyyyyyyyyyyyyc	chr5:79946947-79947172(-)$1	225	147	169	20.0957
hhh!!bbvvvvvvvvvvvvvbb	chr19:45911932-45912200(+)$1	268	148	170	21.1858
dddd!!avvvvvvvvvvvvva2	chr1:70716283-70716628(+)$1	345	174	196	21.9943

#otherMatches

#Seq PSSM
AAGAAGGGAAAGGAAAGCACCG	chr6:31636775-31637002(+)$1	227	184	206	21.2603
CCAAACUCCCCGUUCACCCAGU	chr11:130011310-130011564(+)$1	254	27	49	20.7609
CUUUUUUUUCUUCUUCUUAUAA	chr21:33038661-33038877(+)$1	216	74	96	21.9120
AAAGGAACAAUCUAGAGGAAUC	chr1:245018768-245019011(-)$1	243	16	38	21.9670
GGAGUGGAAACCACAUGCCCCU	chr16:30080038-30080311(+)$1	273	43	65	20.1783
GUGCAGCCCCCCAUUAUCGUUG	chr20:17640718-17641026(-)$1	308	207	229	20.9175
GCAGUACAACUACACUUUUUGG	chr2:233422534-233422804(+)$1	270	91	113	21.6899
GGUGAUCAAGAUACAGGUAGGU	chr9:128000803-128001060(-)$1	257	176	198	20.2705
AGCAGCAAAAAGGAAAUAGUGU	chr7:140706132-140706438(-)$1	306	190	212	22.6858
GCAAGUCAAGGCCAGCAAAGAC	chr19:10260507-10260743(-)$1	236	36	58	22.8070
UUGGUCUCAGAAAAAGUUAGAU	chr12:49230458-49230679(-)$1	221	159	181	20.3428
ACUUUGUCUGACUACAAUAUUC	chr2:55461154-55461359(+)$1	205	159	181	18.4272
CGGCCACUGUAACCAAGAAAGU	chr6:26056001-26056256(-)$1	255	87	109	20.3359
CAGGUAAAAAUAAUGGAGACAC	chr1:32502478-32502740(+)$1	262	163	185	18.2780
GUAACAAAAGAUGGUGUGACUG	chr2:198361786-198362109(-)$1	323	35	57	20.7180
ACUUUUUAAUACAGUUGACAAG	chr2:86386567-86386863(-)$1	296	12	34	20.2705
GCGCCGUGAAGAAGAGAUGCGG	chrX:70517637-70517858(+)$1	221	66	88	19.7015
GCUGAUGAAAAAACUGGAGCGG	chr9:131590910-131591221(-)$1	311	116	138	21.9023
CCAGCCUACAGGAGGAAAAGCA	chr1:153964043-153964252(+)$1	209	74	96	18.1382
GAUAUGGCAUUAAAUUAUUUCC	chr9:117359851-117360165(+)$1	314	257	279	20.4787
GCCUGCGGGAGCGAGCGGAGCA	chr8:144997932-144998188(-)$1	256	159	181	21.6733
GGGAGCUGGAGAAGGAGGAAGC	chr11:62484500-62484762(-)$1	262	152	174	22.2008
gaagaggaaAGAUACCAAACCU	chr15:43814829-43815167(+)$1	338	182	204	22.7595
UUGUCUUAAUUUUAUUCCUAGA	chr1:109770920-109771153(+)$1	233	174	196	21.3501
UAUUGCUGAAAAAAACCUGAAA	chr3:10167214-10167485(+)$1	271	226	248	21.9823
AACUUCAGUUCUCCUUAAAGAA	chr5:72798211-72798506(+)$1	295	159	181	21.0094
AGACUGACAAAUCACCCACCAG	chr1:229462496-229462849(-)$1	353	150	172	19.7992
GUGUGGACUAGUGAUGGGAAUG	chr10:103557801-103558012(-)$1	211	142	164	20.0372
UACACCUGUCCCCCUGCUUCAG	chr19:50001171-50001399(+)$1	228	110	132	19.9237
CACCCAAAAAAAUGCACCAGGG	chr19:10262004-10262272(-)$1	268	122	144	21.2008
ucaauuuuauuuuauuuuuuuu	chr6:33366000-33366264(+)$1	264	237	259	19.6609
GGAAAUGGCCAAACAGAAAGCA	chr2:232325172-232325375(-)$1	203	134	156	21.5651
GUAAGUACUAUAAUUAAUUGCA	chr3:133305343-133305643(+)$1	300	223	245	21.7489
CAAGAGGAUUUCAAAAAACCCC	chr10:52103471-52103841(-)$1	370	87	109	21.5510
UUGAGGAAAGCAGACAUUGACC	chr6:33243507-33243760(+)$1	253	96	118	21.9670
AGUGCUGGAGAAGUAACGAAAC	chr1:155734939-155735209(-)$1	270	44	66	20.2723
UAUCGCAGAACGACAGAAAAAU	chr16:1822136-1822507(-)$1	371	150	172	20.9896
AAAUAGCCUUAAUUGUAAUACC	chr19:8532320-8532564(+)$1	244	74	96	20.2626
ACGUCAAAUACACAAAAACUGA	chr2:74362597-74362857(-)$1	260	29	51	21.0094
UUGACAGUAAACUAGCACCCUG	chr1:113191943-113192192(+)$1	249	203	225	22.4968
GGGCCCUGAAGCGCGUACACAC	chrM:1380-1601(+)$1	221	83	105	20.0801
UGCGUGAGACCAAGCGCCGUCA	chr1:156104537-156104815(+)$1	278	62	84	22.6858
UGUUAGUGUGACUUUUUUUUUU	chr12:118821713-118821975(+)$1	262	75	97	21.0102
CACUUAACAGACAGUAUAAGUA	chr11:32611057-32611288(+)$1	231	157	179	21.4390
AAAGGACAUUUAACUAAAACCC	chrM:1401-1615(+)$1	214	112	134	20.0957
AAGGGCUUUCAGUUAUUAUGGU	chr2:38977055-38977322(-)$1	267	41	63	20.2705
AGAUGGACAAUAUGCUCAUCCA	chr4:6642558-6642834(+)$1	276	206	228	20.6455
CUGCCUAUGAAAAUGACAAAUG	chr5:132203145-132203452(+)$1	307	106	128	21.0219
GCCACGCUCUCACAGGUACCUG	chr11:290480-290726(+)$1	246	182	204	20.7575
GAUAUGAUGGAAGAUGCAAAUG	chr9:33276353-33276652(+)$1	299	121	143	20.0621
UCGUAUGGAACGCCCCAAAAUC	chr20:62624693-62624937(+)$1	244	99	121	18.5204
AUUAAACUUUAAAACAUUUUGU	chr2:172582093-172582324(+)$1	231	142	164	22.2790
GGUGAGCAAAGUGAAUGUGGCU	chr7:99697240-99697469(-)$1	229	40	62	22.5475
GUGUAGCUUUUUUUGUUUUUUU	chr15:60644472-60644776(-)$1	304	11	33	20.1188
UUGGAGCAACAAUAAAAAGCUU	chr21:35275738-35276010(-)$1	272	219	241	20.8750
GCUGUCACUCCAGGCAAAAAGG	chr2:232326572-232326822(-)$1	250	202	224	20.7180
UAGAUAUCCUUACAACUUCAUU	chr19:49994611-49994904(+)$1	293	20	42	21.1253
UGGCCAUUUCUUACCUGUAGGU	chr1:38168823-38169045(+)$1	222	80	102	20.6691
AAAGGACAUUUAACUAAAACCC	chr5:79946947-79947172(-)$1	225	147	169	20.0957
CCCGACCAAAAAGAGAAAGAGG	chr19:45911932-45912200(+)$1	268	148	170	21.1858
UCAUGAAGAAGACAUGGAUAUG	chr1:70716283-70716628(+)$1	345	174	196	21.9943

#DB
.....((............)).	chr6:31636775-31637002(+)$1	1	184	206	21.2603
...((((............)))	chr11:130011310-130011564(+)$1	1	27	49	20.7609
(((.(((.............))	chr21:33038661-33038877(+)$1	1	74	96	21.9120
..((((..............))	chr1:245018768-245019011(-)$1	1	16	38	21.9670
((((.((...........))))	chr16:30080038-30080311(+)$1	1	43	65	20.1783
(.(((((...........))))	chr20:17640718-17641026(-)$1	1	207	229	20.9175
(.(((((..............)	chr2:233422534-233422804(+)$1	1	91	113	21.6899
(((((((............)))	chr9:128000803-128001060(-)$1	1	176	198	20.2705
(.(((((............)))	chr7:140706132-140706438(-)$1	1	190	212	22.6858
....(((............)))	chr19:10260507-10260743(-)$1	1	36	58	22.8070
((.((((...........))))	chr12:49230458-49230679(-)$1	1	159	181	20.3428
..((((...............)	chr2:55461154-55461359(+)$1	1	159	181	18.4272
.(((((((...........)))	chr6:26056001-26056256(-)$1	1	87	109	20.3359
..(((...............))	chr1:32502478-32502740(+)$1	1	163	185	18.2780
((((((..............))	chr2:198361786-198362109(-)$1	1	35	57	20.7180
(((((((............)))	chr2:86386567-86386863(-)$1	1	12	34	20.2705
(((((((...........))))	chrX:70517637-70517858(+)$1	1	66	88	19.7015
((((.((............)).	chr9:131590910-131591221(-)$1	1	116	138	21.9023
..(((((...............	chr1:153964043-153964252(+)$1	1	74	96	18.1382
.((((((.............))	chr9:117359851-117360165(+)$1	1	257	279	20.4787
((((((.............)))	chr8:144997932-144998188(-)$1	1	159	181	21.6733
(((((((............)))	chr11:62484500-62484762(-)$1	1	152	174	22.2008
(...(((............)))	chr15:43814829-43815167(+)$1	1	182	204	22.7595
))((((.............)))	chr1:109770920-109771153(+)$1	1	174	196	21.3501
..(((((..............)	chr3:10167214-10167485(+)$1	1	226	248	21.9823
.(((((.............)))	chr5:72798211-72798506(+)$1	1	159	181	21.0094
).((((.............)))	chr1:229462496-229462849(-)$1	1	150	172	19.7992
(.((((((.............)	chr10:103557801-103558012(-)$1	1	142	164	20.0372
(.((((((...........)))	chr19:50001171-50001399(+)$1	1	110	132	19.9237
(.(((..............)))	chr19:10262004-10262272(-)$1	1	122	144	21.2008
((((................))	chr6:33366000-33366264(+)$1	1	237	259	19.6609
(((..((.............))	chr2:232325172-232325375(-)$1	1	134	156	21.5651
..((((.(...........).)	chr3:133305343-133305643(+)$1	1	223	245	21.7489
((((.((.............))	chr10:52103471-52103841(-)$1	1	87	109	21.5510
..((((..............))	chr6:33243507-33243760(+)$1	1	96	118	21.9670
.((.(((..............)	chr1:155734939-155735209(-)$1	1	44	66	20.2723
..((.((..............)	chr16:1822136-1822507(-)$1	1	150	172	20.9896
))(((((...............	chr19:8532320-8532564(+)$1	1	74	96	20.2626
.(((((.............)))	chr2:74362597-74362857(-)$1	1	29	51	21.0094
((..(((............)))	chr1:113191943-113192192(+)$1	1	203	225	22.4968
((((..((...........)).	chrM:1380-1601(+)$1	1	83	105	20.0801
(.(((((............)))	chr1:156104537-156104815(+)$1	1	62	84	22.6858
(..(((................	chr12:118821713-118821975(+)$1	1	75	97	21.0102
((((((..............))	chr11:32611057-32611288(+)$1	1	157	179	21.4390
..(((................)	chrM:1401-1615(+)$1	1	112	134	20.0957
(((((((............)))	chr2:38977055-38977322(-)$1	1	41	63	20.2705
(..((((...........))))	chr4:6642558-6642834(+)$1	1	206	228	20.6455
((((.(((...........)))	chr5:132203145-132203452(+)$1	1	106	128	21.0219
((((.((..............)	chr11:290480-290726(+)$1	1	182	204	20.7575
(((.(.((...........)).	chr9:33276353-33276652(+)$1	1	121	143	20.0621
..((.((((...........))	chr20:62624693-62624937(+)$1	1	99	121	18.5204
(((((.(.............))	chr2:172582093-172582324(+)$1	1	142	164	22.2790
...((((............)))	chr7:99697240-99697469(-)$1	1	40	62	22.5475
((...((...............	chr15:60644472-60644776(-)$1	1	11	33	20.1188
(.(((((...........))))	chr21:35275738-35276010(-)$1	1	219	241	20.8750
((((((..............))	chr2:232326572-232326822(-)$1	1	202	224	20.7180
..((((................	chr19:49994611-49994904(+)$1	1	20	42	21.1253
(((((..............)))	chr1:38168823-38169045(+)$1	1	80	102	20.6691
..(((................)	chr5:79946947-79947172(-)$1	1	147	169	20.0957
(((..((.............))	chr19:45911932-45912200(+)$1	1	148	170	21.1858
((((..(.............).	chr1:70716283-70716628(+)$1	1	174	196	21.9943

#PSSM
d : 0.14	b : 0.14	f : 0.11	! : 0.09	h : 0.08	: : 0.06	% : 0.04	" : 0.04	# : 0.04	e : 0.04	$ : 0.03	c : 0.03	g : 0.03	F : 0.01	D : 0.01	i : 0.01	
f : 0.13	d : 0.13	[ : 0.13	! : 0.11	h : 0.08	e : 0.08	" : 0.06	% : 0.04	# : 0.04	g : 0.04	$ : 0.03	F : 0.01	: : 0.01	b : 0.01	c : 0.01	i : 0.01	
d : 0.22	e : 0.22	f : 0.13	c : 0.08	h : 0.06	" : 0.04	b : 0.04	! : 0.04	g : 0.03	$ : 0.01	% : 0.01	# : 0.01	[ : 0.01	i : 0.01	
d : 0.26	e : 0.22	f : 0.11	c : 0.09	[ : 0.04	h : 0.04	! : 0.04	g : 0.03	" : 0.03	b : 0.03	$ : 0.01	# : 0.01	i : 0.01	
e : 0.22	d : 0.18	c : 0.16	[ : 0.11	f : 0.08	! : 0.06	h : 0.04	g : 0.03	$ : 0.01	y : 0.01	a : 0.01	i : 0.01	" : 0.01	
e : 0.21	d : 0.19	b : 0.14	c : 0.11	f : 0.08	h : 0.04	y : 0.04	g : 0.03	w : 0.03	! : 0.03	[ : 0.03	x : 0.01	
b : 0.18	e : 0.16	w : 0.11	c : 0.09	d : 0.08	v : 0.08	y : 0.08	h : 0.04	f : 0.04	x : 0.03	a : 0.03	g : 0.01	[ : 0.01	
u : 0.21	v : 0.19	w : 0.19	y : 0.11	t : 0.09	x : 0.04	f : 0.03	b : 0.03	g : 0.01	a : 0.01	c : 0.01	d : 0.01	
u : 0.21	v : 0.21	w : 0.19	t : 0.19	y : 0.11	x : 0.04	d : 0.01	
u : 0.21	v : 0.21	t : 0.21	w : 0.19	y : 0.11	x : 0.04	
u : 0.21	v : 0.21	t : 0.21	w : 0.19	y : 0.11	x : 0.04	
u : 0.21	v : 0.21	t : 0.21	w : 0.19	y : 0.11	x : 0.04	
u : 0.21	v : 0.21	t : 0.21	w : 0.19	y : 0.11	x : 0.04	
u : 0.21	v : 0.21	t : 0.21	w : 0.19	y : 0.11	x : 0.04	
u : 0.21	v : 0.21	t : 0.21	w : 0.19	y : 0.11	x : 0.04	
u : 0.21	v : 0.21	t : 0.21	w : 0.19	y : 0.11	x : 0.04	
u : 0.21	v : 0.21	t : 0.21	w : 0.19	y : 0.11	x : 0.04	
u : 0.21	v : 0.21	t : 0.21	w : 0.19	y : 0.11	x : 0.04	
u : 0.21	v : 0.21	w : 0.19	t : 0.11	y : 0.11	e : 0.04	x : 0.04	d : 0.03	b : 0.01	
w : 0.16	e : 0.16	v : 0.13	y : 0.11	d : 0.09	b : 0.08	c : 0.08	h : 0.04	x : 0.04	g : 0.01	f : 0.01	a : 0.01	t : 0.01	
d : 0.16	e : 0.16	b : 0.11	c : 0.11	y : 0.09	w : 0.08	f : 0.08	h : 0.04	x : 0.03	g : 0.03	a : 0.03	v : 0.01	] : 0.01	
d : 0.19	e : 0.19	c : 0.16	f : 0.09	b : 0.08	y : 0.06	h : 0.04	g : 0.03	] : 0.03	2 : 0.03	3 : 0.01	x : 0.01	i : 0.01	

#score	1274.702711624551
#seq	61
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_CDS_m3_run2.txt

#BEAR
ccc[bb"""==============[ff	chr5:138629681-138629966(+)$1	285	63	89	9.4974
b]eeeeedddd333iiiiiiiii>>>	chr16:31044940-31045257(+)$1	317	185	211	11.1737
cc==========mmmm==========	chr21:38119979-38120204(+)$1	225	130	156	10.3937
eeeee22a]bb]gggggggccc]a22	chr4:79697703-79697963(+)$1	260	149	175	9.5503
5eeeee]dddd]a333ccc]bb]a33	chr4:129208545-129208830(-)$1	285	127	153	10.9523
ccffffff]bb]==============	chr6:43596691-43596967(-)$1	276	87	113	11.0471
]eeeee]dddd]a22dddd]ccc]dd	chr19:1407621-1407886(+)$1	265	56	82	9.6081
3dddd22dddd]a]===========b	chr19:12845210-12845482(-)$1	272	153	179	12.7545
g]ggggggg4444iiiiiiiii]a44	chr19:18547577-18547844(-)$1	267	151	177	11.1940
]ccc333dddd]a]dddd333ccchh	chr16:69419499-69419750(-)$1	251	154	180	9.8530
eeeeeeeeee]bb]============	chr20:307084-307319(-)$1	235	92	118	10.7747
==========oooooo==========	chrX:41193769-41194027(+)$1	258	147	173	10.6107
3ccc333dddd]dddd]eeeee4444	chr19:18548429-18548688(-)$1	259	94	120	9.6790

#otherMatches

#Seq PSSM
GCCGGCCAAGGGCCCAGGGUGCGGCG	chr5:138629681-138629966(+)$1	285	63	89	9.4974
CAUGCGGGACAGGACCCACGAGCUGA	chr16:31044940-31045257(+)$1	317	185	211	11.1737
cccgcgcggcacccgagugcugcgcg	chr21:38119979-38120204(+)$1	225	130	156	10.3937
CCUGGAAGAGUCGCUGGCCGAAGGUA	chr4:79697703-79697963(+)$1	260	149	175	9.5503
ggccggggccggggcgggcgAGGAGA	chr4:129208545-129208830(-)$1	285	127	153	10.9523
AGCUGUUCGGCGGCUGCUGCCGGCCC	chr6:43596691-43596967(-)$1	276	87	113	11.0471
CGCGGCUGUGGGGAGGGCGACGGAGC	chr19:1407621-1407886(+)$1	265	56	82	9.6081
gUUCGAGCCCGGUGUCGGGCGGCGUG	chr19:12845210-12845482(-)$1	272	153	179	12.7545
CCCCAGGCUGGGACAUCUCGUCGCUG	chr19:18547577-18547844(-)$1	267	151	177	11.1940
AGUCAAUCGCUGGGUGCUCAAGUUCU	chr16:69419499-69419750(-)$1	251	154	180	9.8530
GUCGGGGAggcggcggcggcggcggc	chr20:307084-307319(-)$1	235	92	118	10.7747
GAGGCCCUUUUGGCUUGGAGGGCUUC	chrX:41193769-41194027(+)$1	258	147	173	10.6107
AUUCACUGCGCGGCCUGUCUUCAGGU	chr19:18548429-18548688(-)$1	259	94	120	9.6790

#DB
(((.((...((((((((((((((.((	chr5:138629681-138629966(+)$1	1	63	89	9.4974
).)))))))))...)))))))))...	chr16:31044940-31045257(+)$1	1	185	211	11.1737
))((((((((((....))))))))))	chr21:38119979-38120204(+)$1	1	130	156	10.3937
)))))..).)).)))))))))).)..	chr4:79697703-79697963(+)$1	1	149	175	9.5503
.))))).)))).)...))).)).)..	chr4:129208545-129208830(-)$1	1	127	153	10.9523
)))))))).)).))))))))))))))	chr6:43596691-43596967(-)$1	1	87	113	11.0471
.))))).)))).)..)))).))).))	chr19:1407621-1407886(+)$1	1	56	82	9.6081
.))))..)))).).))))))))))))	chr19:12845210-12845482(-)$1	1	153	179	12.7545
).)))))))....))))))))).)..	chr19:18547577-18547844(-)$1	1	151	177	11.1940
.)))...)))).).))))...)))))	chr16:69419499-69419750(-)$1	1	154	180	9.8530
)))))))))).)).))))))))))))	chr20:307084-307319(-)$1	1	92	118	10.7747
((((((((((......))))))))))	chrX:41193769-41194027(+)$1	1	147	173	10.6107
.)))...)))).)))).)))))....	chr19:18548429-18548688(-)$1	1	94	120	9.6790

#PSSM
c : 0.23	e : 0.15	] : 0.15	3 : 0.15	b : 0.07	5 : 0.07	g : 0.07	= : 0.07	
c : 0.38	e : 0.30	] : 0.15	d : 0.07	= : 0.07	
e : 0.38	c : 0.23	= : 0.15	f : 0.07	d : 0.07	g : 0.07	
e : 0.38	= : 0.15	c : 0.15	[ : 0.07	f : 0.07	d : 0.07	g : 0.07	
e : 0.38	= : 0.15	3 : 0.15	b : 0.07	f : 0.07	d : 0.07	g : 0.07	
e : 0.30	= : 0.15	2 : 0.15	3 : 0.15	b : 0.07	f : 0.07	g : 0.07	
e : 0.15	= : 0.15	2 : 0.15	] : 0.15	3 : 0.15	" : 0.07	f : 0.07	g : 0.07	
d : 0.46	= : 0.15	" : 0.07	a : 0.07	f : 0.07	g : 0.07	e : 0.07	
d : 0.46	= : 0.15	] : 0.15	" : 0.07	g : 0.07	e : 0.07	
d : 0.46	= : 0.23	b : 0.15	4 : 0.07	e : 0.07	
d : 0.46	= : 0.15	b : 0.15	4 : 0.07	] : 0.07	o : 0.07	
] : 0.53	= : 0.15	3 : 0.07	4 : 0.07	b : 0.07	o : 0.07	
a : 0.30	= : 0.15	3 : 0.07	m : 0.07	g : 0.07	4 : 0.07	b : 0.07	o : 0.07	d : 0.07	
] : 0.23	= : 0.15	3 : 0.15	m : 0.07	g : 0.07	2 : 0.07	i : 0.07	o : 0.07	d : 0.07	
= : 0.30	i : 0.15	d : 0.15	m : 0.07	g : 0.07	3 : 0.07	2 : 0.07	o : 0.07	
= : 0.30	d : 0.23	i : 0.15	m : 0.07	g : 0.07	3 : 0.07	o : 0.07	
= : 0.46	i : 0.15	d : 0.15	g : 0.07	c : 0.07	] : 0.07	
= : 0.46	i : 0.15	d : 0.15	g : 0.07	c : 0.07	e : 0.07	
= : 0.46	i : 0.15	g : 0.07	c : 0.07	d : 0.07	3 : 0.07	e : 0.07	
= : 0.46	i : 0.15	] : 0.15	c : 0.07	3 : 0.07	e : 0.07	
= : 0.46	i : 0.15	c : 0.15	b : 0.07	3 : 0.07	e : 0.07	
= : 0.46	c : 0.23	i : 0.15	b : 0.07	e : 0.07	
= : 0.46	] : 0.23	c : 0.15	i : 0.07	4 : 0.07	
= : 0.38	a : 0.23	[ : 0.07	> : 0.07	] : 0.07	c : 0.07	4 : 0.07	
= : 0.38	4 : 0.15	f : 0.07	> : 0.07	2 : 0.07	3 : 0.07	d : 0.07	h : 0.07	
= : 0.30	4 : 0.15	f : 0.07	> : 0.07	2 : 0.07	3 : 0.07	d : 0.07	b : 0.07	h : 0.07	

#score	137.08908328224618
#seq	13
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_UTR_m2_run1.txt

#BEAR
!ffffffqqqqqqqqffffff	chr5:38967338-38967613(-)$1	275	15	36	14.5434
f[eeeeeqqqqqqqqeeeee3	chr19:32968406-32968665(+)$1	259	154	175	14.7248
dbb[cccqqqqqqqqccc]bb	chr7:76026800-76027061(-)$1	261	10	31	14.5535
ddd[cccqqqqqqqqccc]dd	chr19:50369570-50369788(-)$1	218	121	142	15.0469
gggddddqqqqqqqqdddd44	chr19:10197826-10198077(+)$1	251	164	185	14.5429
bb[ddddqqqqqqqqddddbb	chr19:39411938-39412185(-)$1	247	126	147	13.6721
ee!!cccqqqqqqqqccc22e	chr8:54714257-54714555(-)$1	298	78	99	15.0508
ffffcccqqqqqqqqccc]ff	chr1:16921324-16921582(-)$1	258	127	148	15.3103
cceeeeeqqqqqqqqeeeee>	chr3:197023955-197024210(-)$1	255	156	177	14.4564
:ffffffqqqqqqqqffffff	chr3:9730283-9730539(+)$1	256	5	26	13.5321
####cccqqqqqqqqccc444	chr1:1323239-1323456(-)$1	217	172	193	15.1021
gggggggqqqqqqqqgggggg	chr8:145691482-145691691(+)$1	209	134	155	15.3488
c[eeeeeqqqqqqqqeeeee]	chr19:58757594-58757885(+)$1	291	56	77	14.8151
gggggggqqqqqqqqgggggg	chr11:126145186-126145424(+)$1	238	60	81	15.3488
gggggggqqqqqqqqgggggg	chr9:139757198-139757437(-)$1	239	203	224	15.3488
ddddcccqqqqqqqqccc22d	chr19:14017161-14017406(+)$1	245	217	238	14.4444
eeeee[aqqqqqqqqa]eeee	chr16:89723886-89724117(-)$1	231	147	168	14.4468
gggggggqqqqqqqqgggggg	chr16:48329824-48330057(+)$1	233	27	48	15.3488
e!!ddddqqqqqqqqdddd22	chr9:35681959-35682232(-)$1	273	137	158	14.2935
gggggggqqqqqqqqgggggg	chr20:32245721-32245939(-)$1	218	196	217	15.3488
:ccc[bbqqqqqqqqbb]ccc	chr17:18152348-18152590(-)$1	242	134	155	12.8606
hccccccqqqqqqqqccc]cc	chr2:61408354-61408615(+)$1	261	175	196	15.3130
eee[cccqqqqqqqqccceee	chr2:234365532-234365740(+)$1	208	80	101	15.4057
$$eeeeeqqqqqqqqeeeeed	chr22:38467612-38467853(+)$1	241	181	202	14.1899
bb[ddddqqqqqqqqddddbb	chr17:7127562-7127809(+)$1	247	174	195	13.6721
gggggggqqqqqqqqgggggg	chr8:145617355-145617591(+)$1	236	39	60	15.3488
eee[cccqqqqqqqqccceee	chr11:72532989-72533250(+)$1	261	40	61	15.4057
ggg[cccqqqqqqqqcccggg	chr7:99949890-99950116(+)$1	226	151	172	15.8616
bbeeeeeqqqqqqqqeeeee:	chr22:25755895-25756205(-)$1	310	226	247	13.2762
dddddddqqqqqqqqdddd]d	chr7:73010194-73010397(-)$1	203	129	150	13.9689
""cccbbqqqqqqqqbb]ccc	chr11:118960633-118960880(+)$1	247	125	146	13.9368
c!!ddddqqqqqqqqddddcc	chr1:53377293-53377539(-)$1	246	107	128	14.7368
###ddddqqqqqqqqddddii	chr17:33325560-33325842(+)$1	282	58	79	14.5105
!!eeeeeqqqqqqqqeeeee2	chr22:50684003-50684267(-)$1	264	23	44	14.7164
b[eeeeeqqqqqqqqeeeeeb	chr8:145692797-145693052(+)$1	255	124	145	14.3516
ccc[ddddqqqqqqqqdddd]	chr17:17718435-17718656(-)$1	221	131	152	12.1523
!ffffffqqqqqqqqffffff	chr7:43687041-43687312(-)$1	271	12	33	14.5434
gggggggqqqqqqqqgggggg	chr1:2445723-2445998(-)$1	275	155	176	15.3488
eee[cccqqqqqqqqccceee	chr7:99949933-99950189(+)$1	256	108	129	15.4057
ff!!cccqqqqqqqqccc333	chr3:69126908-69127171(-)$1	263	11	32	15.5676
dddd[bbqqqqqqqqbb]ddd	chr19:1274277-1274497(+)$1	220	109	130	13.1046
bffffffqqqqqqqqffffff	chr2:188418938-188419217(+)$1	279	237	258	14.2341
ccddddaqqqqqqqqa]dddd	chr9:139910777-139911023(-)$1	246	188	209	14.1456
[ccccccqqqqqqqqccc]cc	chr16:28963360-28963661(+)$1	301	221	242	15.5466
eea[cccqqqqqqqqccc]a]	chr11:18014377-18014618(-)$1	241	5	26	15.4418
d"""cccqqqqqqqqccc]dd	chr11:71169410-71169700(+)$1	290	150	171	15.1857
"""ddddqqqqqqqqdddddd	chr17:26968970-26969196(-)$1	226	134	155	14.3441
!!eeeeeqqqqqqqqeeeee2	chr3:123663696-123663938(-)$1	242	153	174	14.7164
ccc[cccqqqqqqqqccc]cc	chr17:3716269-3716548(-)$1	279	55	76	15.6949
[ffffffqqqqqqqqffffff	chr1:32790000-32790255(+)$1	255	103	124	14.5094
iiiiiiiqqqqqqqqiiiiii	chr2:38545627-38545885(-)$1	258	138	159	14.9596
ee!!cccqqqqqqqqccc22e	chr19:1370712-1370969(+)$1	257	202	223	15.0508
ccc[cccqqqqqqqqcccccc	chr22:46669794-46670066(+)$1	272	111	132	15.5042
eeeecccqqqqqqqqccc]ee	chr6:31936584-31936824(+)$1	240	162	183	15.3348
[ffffffqqqqqqqqffffff	chr17:40725024-40725279(-)$1	255	146	167	14.5094
'ffffffqqqqqqqqffffff	chr17:7077671-7077880(-)$1	209	113	134	13.8406
hhhhh[aqqqqqqqqa]hhhh	chr2:234368818-234369079(+)$1	261	158	179	13.3424
gggggggqqqqqqqqgggggg	chr16:16251417-16251643(-)$1	226	155	176	15.3488
cccddddqqqqqqqqdddd]c	chr4:17585041-17585320(+)$1	279	212	233	14.5121
gggg[bbqqqqqqqqbb]ggg	chr15:25221350-25221577(+)$1	227	123	144	14.2171
ffff!!aqqqqqqqqa22fff	chr11:62397824-62398052(-)$1	228	145	166	13.7825
gggggggqqqqqqqqgggggg	chr2:197596651-197596930(+)$1	279	100	121	15.3488
gggggggqqqqqqqqgggggg	chr12:120992477-120992708(+)$1	231	196	217	15.3488
dbb[cccqqqqqqqqccc]bb	chr7:76026881-76027170(-)$1	289	119	140	14.5535
:ffffffqqqqqqqqffffff	chr19:45596361-45596637(+)$1	276	155	176	13.5321
f!!ddddqqqqqqqqddddff	chr19:40741851-40742095(-)$1	244	140	161	14.6081
c[eeeeeqqqqqqqqeeeee]	chr11:102233546-102233806(+)$1	260	74	95	14.8151

#otherMatches

#Seq PSSM
GGUUUUAUACUUAUCUGAAAU	chr5:38967338-38967613(-)$1	275	15	36	14.5434
GUGAGGCUCCCCAGUGCCUCC	chr19:32968406-32968665(+)$1	259	154	175	14.7248
UGGGGGCUGCCGGAUGCCGCU	chr7:76026800-76027061(-)$1	261	10	31	14.5535
GCAGUGAAACAGGUAUCAGUG	chr19:50369570-50369788(-)$1	218	121	142	15.0469
CCCCUCGCAAAGGACCGGGUC	chr19:10197826-10198077(+)$1	251	164	185	14.5429
GUGCUCCACAUGGUCGGAGAC	chr19:39411938-39412185(-)$1	247	126	147	13.6721
UCAACACUUCUUCUUGUGCAG	chr8:54714257-54714555(-)$1	298	78	99	15.0508
UGCUAAGAAUUCAAACUUCAG	chr1:16921324-16921582(-)$1	258	127	148	15.3103
GAGAGUUUAUUCCGUAACUCU	chr3:197023955-197024210(-)$1	255	156	177	14.4564
GCUGCUUUCCAGGACAGGCAG	chr3:9730283-9730539(+)$1	256	5	26	13.5321
UUCUGCUUUGUAACUGGCUCC	chr1:1323239-1323456(-)$1	217	172	193	15.1021
CAGGUGCGGCCGCGGGCACCU	chr8:145691482-145691691(+)$1	209	134	155	15.3488
AAGUGCCCUGUUUCAGGCAUC	chr19:58757594-58757885(+)$1	291	56	77	14.8151
CCCCUGGUGUCUGCUCCAGGG	chr11:126145186-126145424(+)$1	238	60	81	15.3488
UCUGGAGCUUUGCUUCUCCAG	chr9:139757198-139757437(-)$1	239	203	224	15.3488
GGGCCCCACCCCCCAGGGAAG	chr19:14017161-14017406(+)$1	245	217	238	14.4444
CUCCGGGGACUCGCGCGCGGG	chr16:89723886-89724117(-)$1	231	147	168	14.4468
UGUGUGUUUUCACUUAUAUAC	chr16:48329824-48330057(+)$1	233	27	48	15.3488
GAACUCAACAACCUGUGAGGG	chr9:35681959-35682232(-)$1	273	137	158	14.2935
GCGGUGGACCCCCACUCACUG	chr20:32245721-32245939(-)$1	218	196	217	15.3488
CCUCUCUGGACCCAAGGUGAG	chr17:18152348-18152590(-)$1	242	134	155	12.8606
AUGACACUGAGGUAUGUGAUC	chr2:61408354-61408615(+)$1	261	175	196	15.3130
AGAACCUGGAGCAAAAGGUCU	chr2:234365532-234365740(+)$1	208	80	101	15.4057
CCUGGGGCCUCUCACUCCCAU	chr22:38467612-38467853(+)$1	241	181	202	14.1899
GCCUGCAUCAGGGACUGCAGC	chr17:7127562-7127809(+)$1	247	174	195	13.6721
GGCAGGGCAAGCCUCUCCUGC	chr8:145617355-145617591(+)$1	236	39	60	15.3488
CCCACUGGGCAGUGACGGGGG	chr11:72532989-72533250(+)$1	261	40	61	15.4057
CCAUGGGGCGCCGGACCCUGG	chr7:99949890-99950116(+)$1	226	151	172	15.8616
GCUGAUCAACACCAAGAUCAA	chr22:25755895-25756205(-)$1	310	226	247	13.2762
CUGAGUACAUCCUUAUGCUAC	chr7:73010194-73010397(-)$1	203	129	150	13.9689
AAACCCUGCCAGAGAAGAGGU	chr11:118960633-118960880(+)$1	247	125	146	13.9368
CUGCCCGCAAUGCCUUGGGGA	chr1:53377293-53377539(-)$1	246	107	128	14.7368
UCAGGGUACAUAUGAGCCUGG	chr17:33325560-33325842(+)$1	282	58	79	14.5105
CAGCUAGCAGGGAUCCUGGCC	chr22:50684003-50684267(-)$1	264	23	44	14.7164
CACUGGGGGAUGAGACCCAGG	chr8:145692797-145693052(+)$1	255	124	145	14.3516
GUUGUGCCCUCCUCCAGGCAA	chr17:17718435-17718656(-)$1	221	131	152	12.1523
AGCCGGGCAAAUCCCCUUGGC	chr7:43687041-43687312(-)$1	271	12	33	14.5434
GUUCCGGCAGAAGUACUGGAA	chr1:2445723-2445998(-)$1	275	155	176	15.3488
CCAUGGGGCGCCGGACCCUGG	chr7:99949933-99950189(+)$1	256	108	129	15.4057
GUUACCUUUUCAUUUGGGGAU	chr3:69126908-69127171(-)$1	263	11	32	15.5676
UUCACCUGGAACAAGAGCUGG	chr19:1274277-1274497(+)$1	220	109	130	13.1046
GGGAGCCUCAGAGUCGGCUUC	chr2:188418938-188419217(+)$1	279	237	258	14.2341
GAAGCUGGCCCUGAACAAGCU	chr9:139910777-139911023(-)$1	246	188	209	14.1456
CCUGGGGUUUAUAUUCCUGCA	chr16:28963360-28963661(+)$1	301	221	242	15.5466
GGCUGAGUGCCCCCUCUCUGC	chr11:18014377-18014618(-)$1	241	5	26	15.4418
CACUCAGGACAUCAUCUGCGA	chr11:71169410-71169700(+)$1	290	150	171	15.1857
UGGACCUGUGUCUAAAGGUGG	chr17:26968970-26969196(-)$1	226	134	155	14.3441
ACUUCCAACAGUAAGUGGAAA	chr3:123663696-123663938(-)$1	242	153	174	14.7164
GCUGAGGAAGACGACUCUGAG	chr17:3716269-3716548(-)$1	279	55	76	15.6949
UAUUCGAUGGCCUGUUUGAGU	chr1:32790000-32790255(+)$1	255	103	124	14.5094
UUGAUAGCCAGUCAACUAUCA	chr2:38545627-38545885(-)$1	258	138	159	14.9596
CAGCCAGUACGUGACCUGUGU	chr19:1370712-1370969(+)$1	257	202	223	15.0508
CCCAGCCGCUGACAAGGCGGG	chr22:46669794-46670066(+)$1	272	111	132	15.5042
CUCAUGUUUGACAAUGCACUG	chr6:31936584-31936824(+)$1	240	162	183	15.3348
CAGUUCUUUGUAAGUGGAGCU	chr17:40725024-40725279(-)$1	255	146	167	14.5094
UGCUGCUCCACGUGAAGCAGU	chr17:7077671-7077880(-)$1	209	113	134	13.8406
GGUCCUCAUUCACAGGUGGGC	chr2:234368818-234369079(+)$1	261	158	179	13.3424
GGAGUUUAGGCCAAAGGACUC	chr16:16251417-16251643(-)$1	226	155	176	15.3488
GCUCUAUGGAAGGUGAUGGAA	chr4:17585041-17585320(+)$1	279	212	233	14.5121
GAGCGUGAAGAAAAGCGGGUU	chr15:25221350-25221577(+)$1	227	123	144	14.2171
UGGGGCUGUAUGUUAAAACCC	chr11:62397824-62398052(-)$1	228	145	166	13.7825
UUCAGAUAACAGCUAAUCUGG	chr2:197596651-197596930(+)$1	279	100	121	15.3488
ACGCAGCAGCUGUUGGCUGUG	chr12:120992477-120992708(+)$1	231	196	217	15.3488
UGGGGGCUGCCGGAUGCCGCU	chr7:76026881-76027170(-)$1	289	119	140	14.5535
ACCCGGAGAGACAAAUCCGGG	chr19:45596361-45596637(+)$1	276	155	176	13.5321
CAUGUACGAGAUGAUGUGCGG	chr19:40741851-40742095(-)$1	244	140	161	14.6081
UUUUAGGUGUGAGUUCUUGAU	chr11:102233546-102233806(+)$1	260	74	95	14.8151

#DB
.((((((........))))))	chr5:38967338-38967613(-)$1	1	15	36	14.5434
(.(((((........))))).	chr19:32968406-32968665(+)$1	1	154	175	14.7248
(((.(((........))).))	chr7:76026800-76027061(-)$1	1	10	31	14.5535
(((.(((........))).))	chr19:50369570-50369788(-)$1	1	121	142	15.0469
(((((((........))))..	chr19:10197826-10198077(+)$1	1	164	185	14.5429
((.((((........))))))	chr19:39411938-39412185(-)$1	1	126	147	13.6721
((..(((........)))..)	chr8:54714257-54714555(-)$1	1	78	99	15.0508
(((((((........))).))	chr1:16921324-16921582(-)$1	1	127	148	15.3103
(((((((........))))).	chr3:197023955-197024210(-)$1	1	156	177	14.4564
.((((((........))))))	chr3:9730283-9730539(+)$1	1	5	26	13.5321
....(((........)))...	chr1:1323239-1323456(-)$1	1	172	193	15.1021
(((((((........))))))	chr8:145691482-145691691(+)$1	1	134	155	15.3488
(.(((((........))))).	chr19:58757594-58757885(+)$1	1	56	77	14.8151
(((((((........))))))	chr11:126145186-126145424(+)$1	1	60	81	15.3488
(((((((........))))))	chr9:139757198-139757437(-)$1	1	203	224	15.3488
(((((((........)))..)	chr19:14017161-14017406(+)$1	1	217	238	14.4444
(((((.(........).))))	chr16:89723886-89724117(-)$1	1	147	168	14.4468
(((((((........))))))	chr16:48329824-48330057(+)$1	1	27	48	15.3488
(..((((........))))..	chr9:35681959-35682232(-)$1	1	137	158	14.2935
(((((((........))))))	chr20:32245721-32245939(-)$1	1	196	217	15.3488
.(((.((........)).)))	chr17:18152348-18152590(-)$1	1	134	155	12.8606
(((((((........))).))	chr2:61408354-61408615(+)$1	1	175	196	15.3130
(((.(((........))))))	chr2:234365532-234365740(+)$1	1	80	101	15.4057
..(((((........))))))	chr22:38467612-38467853(+)$1	1	181	202	14.1899
((.((((........))))))	chr17:7127562-7127809(+)$1	1	174	195	13.6721
(((((((........))))))	chr8:145617355-145617591(+)$1	1	39	60	15.3488
(((.(((........))))))	chr11:72532989-72533250(+)$1	1	40	61	15.4057
(((.(((........))))))	chr7:99949890-99950116(+)$1	1	151	172	15.8616
))(((((........))))).	chr22:25755895-25756205(-)$1	1	226	247	13.2762
(((((((........)))).)	chr7:73010194-73010397(-)$1	1	129	150	13.9689
..(((((........)).)))	chr11:118960633-118960880(+)$1	1	125	146	13.9368
(..((((........))))))	chr1:53377293-53377539(-)$1	1	107	128	14.7368
...((((........))))))	chr17:33325560-33325842(+)$1	1	58	79	14.5105
..(((((........))))).	chr22:50684003-50684267(-)$1	1	23	44	14.7164
(.(((((........))))))	chr8:145692797-145693052(+)$1	1	124	145	14.3516
(((.((((........)))).	chr17:17718435-17718656(-)$1	1	131	152	12.1523
.((((((........))))))	chr7:43687041-43687312(-)$1	1	12	33	14.5434
(((((((........))))))	chr1:2445723-2445998(-)$1	1	155	176	15.3488
(((.(((........))))))	chr7:99949933-99950189(+)$1	1	108	129	15.4057
((..(((........)))...	chr3:69126908-69127171(-)$1	1	11	32	15.5676
((((.((........)).)))	chr19:1274277-1274497(+)$1	1	109	130	13.1046
)((((((........))))))	chr2:188418938-188419217(+)$1	1	237	258	14.2341
))(((((........).))))	chr9:139910777-139911023(-)$1	1	188	209	14.1456
.((((((........))).))	chr16:28963360-28963661(+)$1	1	221	242	15.5466
(((.(((........))).).	chr11:18014377-18014618(-)$1	1	5	26	15.4418
(...(((........))).))	chr11:71169410-71169700(+)$1	1	150	171	15.1857
...((((........))))))	chr17:26968970-26969196(-)$1	1	134	155	14.3441
..(((((........))))).	chr3:123663696-123663938(-)$1	1	153	174	14.7164
(((.(((........))).))	chr17:3716269-3716548(-)$1	1	55	76	15.6949
.((((((........))))))	chr1:32790000-32790255(+)$1	1	103	124	14.5094
(((((((........))))))	chr2:38545627-38545885(-)$1	1	138	159	14.9596
((..(((........)))..)	chr19:1370712-1370969(+)$1	1	202	223	15.0508
(((.(((........))))))	chr22:46669794-46670066(+)$1	1	111	132	15.5042
(((((((........))).))	chr6:31936584-31936824(+)$1	1	162	183	15.3348
.((((((........))))))	chr17:40725024-40725279(-)$1	1	146	167	14.5094
.((((((........))))))	chr17:7077671-7077880(-)$1	1	113	134	13.8406
(((((.(........).))))	chr2:234368818-234369079(+)$1	1	158	179	13.3424
(((((((........))))))	chr16:16251417-16251643(-)$1	1	155	176	15.3488
(((((((........)))).)	chr4:17585041-17585320(+)$1	1	212	233	14.5121
((((.((........)).)))	chr15:25221350-25221577(+)$1	1	123	144	14.2171
((((..(........)..)))	chr11:62397824-62398052(-)$1	1	145	166	13.7825
(((((((........))))))	chr2:197596651-197596930(+)$1	1	100	121	15.3488
(((((((........))))))	chr12:120992477-120992708(+)$1	1	196	217	15.3488
(((.(((........))).))	chr7:76026881-76027170(-)$1	1	119	140	14.5535
.((((((........))))))	chr19:45596361-45596637(+)$1	1	155	176	13.5321
(..((((........))))))	chr19:40741851-40742095(-)$1	1	140	161	14.6081
(.(((((........))))).	chr11:102233546-102233806(+)$1	1	74	95	14.8151

#PSSM
g : 0.19	e : 0.13	c : 0.13	d : 0.10	f : 0.07	b : 0.07	! : 0.05	: : 0.04	[ : 0.04	# : 0.02	h : 0.02	" : 0.02	$ : 0.01	i : 0.01	' : 0.01	
g : 0.19	f : 0.16	c : 0.13	e : 0.11	b : 0.07	! : 0.07	[ : 0.05	d : 0.05	" : 0.04	# : 0.02	$ : 0.01	i : 0.01	h : 0.01	
e : 0.20	g : 0.19	f : 0.14	c : 0.11	! : 0.08	d : 0.07	b : 0.02	[ : 0.02	# : 0.02	" : 0.02	a : 0.01	i : 0.01	h : 0.01	
d : 0.19	e : 0.16	[ : 0.16	g : 0.16	f : 0.14	c : 0.05	! : 0.04	# : 0.01	" : 0.01	i : 0.01	h : 0.01	
c : 0.31	d : 0.17	e : 0.14	g : 0.14	f : 0.11	[ : 0.04	i : 0.01	h : 0.01	! : 0.01	
c : 0.29	d : 0.17	g : 0.14	e : 0.13	f : 0.11	b : 0.05	[ : 0.02	i : 0.01	! : 0.01	
c : 0.29	d : 0.16	g : 0.14	e : 0.13	f : 0.11	a : 0.05	b : 0.05	i : 0.01	
q : 0.98	d : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.29	d : 0.14	g : 0.14	e : 0.13	f : 0.11	a : 0.05	b : 0.05	q : 0.01	i : 0.01	
c : 0.29	d : 0.16	g : 0.14	e : 0.13	f : 0.11	b : 0.05	] : 0.04	i : 0.01	2 : 0.01	
c : 0.29	d : 0.17	e : 0.14	g : 0.14	f : 0.11	] : 0.05	i : 0.01	h : 0.01	2 : 0.01	
e : 0.19	d : 0.19	g : 0.17	] : 0.14	f : 0.13	2 : 0.04	c : 0.04	4 : 0.01	3 : 0.01	i : 0.01	h : 0.01	
e : 0.20	g : 0.17	f : 0.16	c : 0.10	d : 0.08	b : 0.05	2 : 0.05	4 : 0.02	] : 0.02	i : 0.02	3 : 0.01	a : 0.01	h : 0.01	
g : 0.17	f : 0.16	d : 0.11	c : 0.11	e : 0.10	b : 0.07	] : 0.05	2 : 0.04	3 : 0.02	4 : 0.02	i : 0.02	> : 0.01	: : 0.01	h : 0.01	

#score	981.3875647847276
#seq	67
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_CDS_m3_run2.txt

#BEAR
::EEEEEYYEEEEEZZZCCC	chr1:234745102-234745360(-)$1	258	206	226	16.5262
EEEYYCCCDDDDBBZZZDDD	chr8:144940520-144940795(-)$1	275	243	263	14.7598
BB}DDDD}CCCCCCZZZDDD	chr19:39340237-39340490(-)$1	253	231	251	14.1587
EEEE}CCCYYEEEEEYYFFF	chr19:3977936-3978189(-)$1	253	228	248	14.7019
DDDDDDZZZEEEEEZZZCCC	chr16:30081050-30081284(+)$1	234	209	229	16.3903
}EEEEEBB}EEEEEZZZFFF	chr19:47290824-47291110(-)$1	286	256	276	17.5289

#otherMatches

#Seq PSSM
CUGGGACUUCACCGAACCCG	chr1:234745102-234745360(-)$1	258	206	226	16.5262
CGUGGUGGGCGGCGAGAUCC	chr8:144940520-144940795(-)$1	275	243	263	14.7598
GGGGGCCUCUGCGCACGCGC	chr19:39340237-39340490(-)$1	253	231	251	14.1587
GGACGUGGCUGAGGCCCGCA	chr19:3977936-3978189(-)$1	253	228	248	14.7019
CCGAGCCCUGCAGGCCUCUG	chr16:30081050-30081284(+)$1	234	209	229	16.3903
GCUCGGCCGUCUGGGCGCCU	chr19:47290824-47291110(-)$1	286	256	276	17.5289

#DB
..)))))..)))))...)))	chr1:234745102-234745360(-)$1	1	206	226	16.5262
)))..)))))))))...)))	chr8:144940520-144940795(-)$1	1	243	263	14.7598
)).)))).))))))...)))	chr19:39340237-39340490(-)$1	1	231	251	14.1587
)))).)))..)))))..)))	chr19:3977936-3978189(-)$1	1	228	248	14.7019
))))))...)))))...)))	chr16:30081050-30081284(+)$1	1	209	229	16.3903
.))))))).)))))...)))	chr19:47290824-47291110(-)$1	1	256	276	17.5289

#PSSM
E : 0.33	: : 0.16	B : 0.16	D : 0.16	} : 0.16	
E : 0.50	: : 0.16	B : 0.16	D : 0.16	
E : 0.66	} : 0.16	D : 0.16	
E : 0.50	D : 0.33	Y : 0.16	
E : 0.33	D : 0.33	Y : 0.16	} : 0.16	
E : 0.33	C : 0.33	D : 0.33	
C : 0.33	E : 0.16	D : 0.16	Z : 0.16	B : 0.16	
C : 0.33	Y : 0.16	} : 0.16	Z : 0.16	B : 0.16	
Y : 0.33	D : 0.16	C : 0.16	Z : 0.16	} : 0.16	
E : 0.50	D : 0.16	C : 0.16	Y : 0.16	
E : 0.66	D : 0.16	C : 0.16	
E : 0.66	D : 0.16	C : 0.16	
E : 0.66	B : 0.16	C : 0.16	
E : 0.66	B : 0.16	C : 0.16	
Z : 0.83	E : 0.16	
Z : 0.83	Y : 0.16	
Z : 0.83	Y : 0.16	
C : 0.33	D : 0.33	F : 0.33	
C : 0.33	D : 0.33	F : 0.33	
C : 0.33	D : 0.33	F : 0.33	

#score	94.06604639195004
#seq	6
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_CDS_m2_run2.txt

#BEAR
c[bb[ccc!!cccooooooccc22ccc22bb	chr4:83799890-83800165(-)$1	275	181	212	13.4344
:eeeee!!eeeeeooooooeeeee]eeeee:	chr5:137904519-137904772(-)$1	253	87	118	12.4395
======!!eeeeennnnneeeee333=====	chr11:57099048-57099292(-)$1	244	176	207	11.3945
ccc[eeeee[cccooooooccceeeee]ccc	chr17:5335764-5336031(+)$1	267	133	164	13.6465
cc[ccccccddddoooooodddd666666cc	chr2:114699698-114699974(+)$1	276	116	147	13.0980
eeeee!!bbddddoooooodddd333bb22e	chr16:772334-772596(+)$1	262	128	159	15.2627
c[cccccc[ddddnnnnnddddccc]ccccc	chr2:85553646-85553909(-)$1	263	111	142	11.0917
hheeeee!!ddddnnnnndddd333eeeee8	chr11:118960839-118961076(+)$1	237	70	101	11.6608
eee[a"""ccc[aooooooa]ccc333a]ee	chr4:83742100-83742323(-)$1	223	68	99	14.4754
iiiiiiii"""bboooooobbiiiiiiiii2	chr6:31526031-31526273(+)$1	242	170	201	13.9382
eeeeeeee[ddddoooooodddd]eeeee]e	chrX:47040511-47040776(+)$1	265	194	225	15.5132
ggggggg!!ddddoooooodddd22gggggg	chr2:96956073-96956339(-)$1	266	152	183	17.0626
%%%dddd####bboooooobb333dddd333	chr18:9950341-9950589(+)$1	248	186	217	12.1429
bbgggggggddddnnnnndddd4444ggggg	chr1:160293122-160293373(-)$1	251	148	179	11.5195
GG::dddd[ddddoooooodddd22ddddee	chr16:2053509-2053777(-)$1	268	192	223	12.1634
cc!!iiiiiiiiiooooooiiiiiiiii22c	chr15:76577889-76578095(-)$1	206	87	118	14.1310
mgggggggeeeeeooooooeeeeeccc!!ee	chr16:105761-105983(+)$1	222	158	189	12.6488
"""ccc[ffffffooooooffffff]ccc]c	chr8:56866356-56866609(+)$1	253	105	136	12.2582
d[eeeee[bba[aooooooa]a]bbeeeeed	chr10:73590782-73590992(-)$1	210	146	177	12.4947
ffffff"""ddddooooooddddffffff]a	chr6:118015151-118015410(+)$1	259	107	138	15.1305
ggggggg!!ddddmmmmdddd333ggggggg	chr1:8044897-8045155(+)$1	258	128	159	11.1155
ggggggbb[ddddoooooodddd333bb]gg	chr22:38254586-38254814(+)$1	228	129	160	16.1819
ee[eeeee!!cccooooooccc]eeeee22e	chr1:155263927-155264208(-)$1	281	142	173	14.0550
gggg[a[a[ddddoooooodddda]aggggg	chr1:32504111-32504321(+)$1	210	35	66	16.4450
]agggggggddddoooooodddd]ggggggg	chr12:56504647-56504900(+)$1	253	190	221	15.7702
cc[ccc"""ddddooooooddddccc]ccc5	chr12:131357569-131357774(+)$1	205	154	185	15.4843
:============oooooo============	chr3:186503877-186504085(+)$1	208	75	106	14.4022
[ccc[a[a[ddddoooooodddda]a]ccca	chr1:224592059-224592348(-)$1	289	147	178	16.0291
[eeeee[ccc[bboooooobb]ccc]eeeee	chr12:57037226-57037470(-)$1	244	187	218	13.0085
ccc[eeeee[cccooooooccc]eeeee333	chr17:7477514-7477726(+)$1	212	24	55	14.3046
!!eeeee####cccooooooccc22eeeee]	chr6:42937603-42937826(-)$1	223	177	208	13.6168
c"""ffffff!!aooooooa22ffffff333	chr9:131284946-131285196(+)$1	250	74	105	12.7199
b[bb$$$$$ddddoooooodddd333bb]bb	chr12:99071173-99071423(+)$1	250	170	201	14.3643
+++eeeee[ddddoooooodddd]eeeee88	chr11:62302468-62302735(-)$1	267	110	141	13.3180
ggggggg!!ddddoooooodddd22gggggg	chr1:45480942-45481195(+)$1	253	200	231	17.0626
####ccc[eeeeeooooooeeeeeccc22cc	chr10:76978717-76979001(+)$1	284	185	216	13.4116
$ffffff[eeeeeooooooeeeee4444fff	chr8:120854000-120854258(-)$1	258	18	49	13.2361
!cccdddd[ddddoooooodddddddd8888	chr10:71136690-71136940(+)$1	250	53	84	13.3240
[ffffff!!ddddoooooodddd4444ffff	chr16:30080823-30081038(+)$1	215	133	164	16.0230
eeeee22bbddddoooooodddd::iiiiii	chr17:79573648-79573927(-)$1	279	178	209	12.1844
oddddddddddddoooooodddd]ddddFFF	chr3:49135418-49135650(-)$1	232	177	208	12.6197
iiiiiiiii!!bboooooobb22iiiiiiii	chr19:6380333-6380587(-)$1	254	82	113	13.6521
eeee$$$$$ddddoooooodddd22eeeee4	chr12:64812748-64812963(+)$1	215	22	53	15.0858
[ggggggg!!cccooooooccc>>>>>>>>>	chr2:188361527-188361794(-)$1	267	85	116	13.7163
ggggggg####bboooooobb22ggggggge	chr6:160201474-160201695(-)$1	221	40	71	13.7577
bb[dddd[ccc[aooooooaccc]ddddbb]	chr14:102508684-102508919(+)$1	235	135	166	12.8110
cccdddd"""bb[aooooooabb333ddddD	chr1:20979335-20979564(-)$1	229	113	144	11.2175
::iiiiiiiii[aooooooa]iiiiiiiii:	chr11:61564244-61564513(+)$1	269	186	217	11.9897
####bb[dddd[aooooooa]dddd]bb444	chr7:103151303-103151553(-)$1	250	140	171	13.5191
c!!ccc"""ddddoooooodddd333ccc]c	chr3:53260670-53260882(-)$1	212	29	60	17.4906
[iiiiiiiii!!aooooooa22iiiiiiiii	chr4:185685917-185686177(-)$1	260	146	177	14.3406
fffff[ddddcccooooooccc]ddddffff	chr12:76443433-76443637(-)$1	204	161	192	12.6783
FFeeeee!!ddddoooooodddd22eeeeee	chr7:100887186-100887428(-)$1	242	41	72	15.5159

#otherMatches

#Seq PSSM
UAUGAUCCUUCUAAAAUUAUAGCUGGAGACA	chr4:83799890-83800165(-)$1	275	181	212	13.4344
AGGCUCAUGGGAAAUUGUAUUCUCCGAGUCA	chr5:137904519-137904772(-)$1	253	87	118	12.4395
UGGGCAUCCUGGUCCCGAGCCAGCUUUGUCU	chr11:57099048-57099292(-)$1	244	176	207	11.3945
CUUGGACUCACAUCAUUCUAUGGGGUUGAAG	chr17:5335764-5336031(+)$1	267	133	164	13.6465
AUACAGAUGGGUCAAAAUGGAUUAAACAGUA	chr2:114699698-114699974(+)$1	276	116	147	13.0980
CUGGGGAGGCCGCCUCCUCGCGGAUACCCAU	chr16:772334-772596(+)$1	262	128	159	15.2627
GAGAACCGUGAAGGGACACUUUCGGAUUCCA	chr2:85553646-85553909(-)$1	263	111	142	11.0917
ACCAGCUCCCUGCGAAGAGCAGCCCAGCUGC	chr11:118960839-118961076(+)$1	237	70	101	11.6608
AAGAGGAAGCUAGAUGAUGCCAGCAAACGUU	chr4:83742100-83742323(-)$1	223	68	99	14.4754
GGGCCCCCCUUUGGAGGAACAGGGGGCUCUG	chr6:31526031-31526273(+)$1	242	170	201	13.9382
CCAGGGCACAGAGUCUUCCCUCUAUGCCCAU	chrX:47040511-47040776(+)$1	265	194	225	15.5132
UGGGGAGCUACAGUACUACCUGUCCCUCCUC	chr2:96956073-96956339(-)$1	266	152	183	17.0626
AAAUGAUGAAGCUAUCAGAAGAAAAUCGGCA	chr18:9950341-9950589(+)$1	248	186	217	12.1429
GAAUGGUGAGUGAACCGGUUACAUUAUCGCC	chr1:160293122-160293373(-)$1	251	148	179	11.5195
CCCUGUGGUUGUGGCCCUUCACGUCCCACUC	chr16:2053509-2053777(-)$1	268	192	223	12.1634
CUAACAGGUGCCAAAGUGGUGGUAUCUGGUG	chr15:76577889-76578095(-)$1	206	87	118	14.1310
UGGGGCUAGUGCCCUUCUUGGCACUGUCACC	chr16:105761-105983(+)$1	222	158	189	12.6488
AAAGAUGCCUGGGAGAUCCCCCGGGAGUCCA	chr8:56866356-56866609(+)$1	253	105	136	12.2582
UUCUGGGGCCCAGGAGAGGCAGUGGCCCAGA	chr10:73590782-73590992(-)$1	210	146	177	12.4947
GCUGCUCAGGACUUUUGCCAGUUAGUAGCCC	chr6:118015151-118015410(+)$1	259	107	138	15.1305
GCUUCGAGUUUGCGCUUGCAAUUGUUGAAGC	chr1:8044897-8045155(+)$1	258	128	159	11.1155
UAUACUACAGGCACAUAUAUGCCAAAGUCAG	chr22:38254586-38254814(+)$1	228	129	160	16.1819
GCUGCAACUUGGCGGGCAAGCCUGUUGUCUG	chr1:155263927-155264208(-)$1	281	142	173	14.0550
UUCUAGGGAUAUGAUGAUACAUACGCAGAAC	chr1:32504111-32504321(+)$1	210	35	66	16.4450
GGAGGGUGAGUUCCAAAAAGAGCUUCACUUU	chr12:56504647-56504900(+)$1	253	190	221	15.7702
AGUCUUCAAGGUUAUAGAAAAUCAGGUCUGU	chr12:131357569-131357774(+)$1	205	154	185	15.4843
CUCCAAAAUGGAUCAAAAUGUUUGUUUUGGA	chr3:186503877-186504085(+)$1	208	75	106	14.4022
UCCAGAUGACAACUAUCUUGUUGCUUGUGGC	chr1:224592059-224592348(-)$1	289	147	178	16.0291
GUUUGCUGGUGUUGGUGAGAGGACCCGUGAA	chr12:57037226-57037470(-)$1	244	187	218	13.0085
GGUCGGGCAGGGGACAAAACUUAUGCUUUAA	chr17:7477514-7477726(+)$1	212	24	55	14.3046
GACACCACCCAUACCUCCUUGUACAUGGUGA	chr6:42937603-42937826(-)$1	223	177	208	13.6168
GAAGCGGUUUGAUGAAUGGAAGGAACUGAAG	chr9:131284946-131285196(+)$1	250	74	105	12.7199
UUGAGAAAAAUGCAAAGAGGCAUGUAUCCAG	chr12:99071173-99071423(+)$1	250	170	201	14.3643
CCUGCAGUCGGGUGAGGUGACCCAGCUGCUG	chr11:62302468-62302735(-)$1	267	110	141	13.3180
ACACUCACGUCUGCUUCGACAGAACUGAGUG	chr1:45480942-45481195(+)$1	253	200	231	17.0626
AUGGUCUGACUUUCACAGAAAAGUGGAACAC	chr10:76978717-76979001(+)$1	284	185	216	13.4116
AAUAUUUAAUUGUAAGAUGAUAAUAUGAAAA	chr8:120854000-120854258(-)$1	258	18	49	13.2361
AGUCAAGAUGGCCAAGGAGGGCCUCUUAUUU	chr10:71136690-71136940(+)$1	250	53	84	13.3240
CACAGCGCUGCGCCGCACAGUGCCCCCCGCU	chr16:30080823-30081038(+)$1	215	133	164	16.0230
UGCCAGCCGAGCGCCAUCACGCUGAACAGAC	chr17:79573648-79573927(-)$1	279	178	209	12.1844
UGAGCGUCUUGGAUAUUUCUCCGUGGAUCCA	chr3:49135418-49135650(-)$1	232	177	208	12.6197
CAUCCUCAGCGACGUGCAGGUGACUGAGGAU	chr19:6380333-6380587(-)$1	254	82	113	13.6521
UCUCAGUAGUGGACCUAAAUCCAAGGGGAGU	chr12:64812748-64812963(+)$1	215	22	53	15.0858
AUAUUUUCACUCGACAGUGCGAAGAAUUUAU	chr2:188361527-188361794(-)$1	267	85	116	13.7163
GGAUAUUAAAAUCAUGAAAGAGCAAUAUUCA	chr6:160201474-160201695(-)$1	221	40	71	13.7577
CCUCACCAUGGAGAUCAACCCCAAGGUGGGU	chr14:102508684-102508919(+)$1	235	135	166	12.8110
UGAUCCAGCAGCUCUCAAAUGGCAAAUGGGU	chr1:20979335-20979564(-)$1	229	113	144	11.2175
CAUCUUAGCAGAUGGGAGGAACUGCUGAGAG	chr11:61564244-61564513(+)$1	269	186	217	11.9897
AAAGAUUCUGUGACUCCCCUGAUGGUGUGAU	chr7:103151303-103151553(-)$1	250	140	171	13.5191
CCCCUGGACAGAAAACUCAUUCUCGACAGCG	chr3:53260670-53260882(-)$1	212	29	60	17.4906
ACCAUGCCUGGAGACUGGACCGCAGGUAUGG	chr4:185685917-185686177(-)$1	260	146	177	14.3406
AAUGACUUAUGUAUUCCUUUGCUAUAAUCAU	chr12:76443433-76443637(-)$1	204	161	192	12.6783
GCAGGCUCGGUGUCCAAGAGCACGCAGUUUG	chr7:100887186-100887428(-)$1	242	41	72	15.5159

#DB
(.((.(((..(((......)))..)))..))	chr4:83799890-83800165(-)$1	1	181	212	13.4344
.(((((..(((((......))))).))))).	chr5:137904519-137904772(-)$1	1	87	118	12.4395
((((((..(((((.....)))))...)))))	chr11:57099048-57099292(-)$1	1	176	207	11.3945
(((.(((((.(((......)))))))).)))	chr17:5335764-5336031(+)$1	1	133	164	13.6465
((.((((((((((......))))......))	chr2:114699698-114699974(+)$1	1	116	147	13.0980
(((((..((((((......))))...))..)	chr16:772334-772596(+)$1	1	128	159	15.2627
(.((((((.((((.....))))))).)))))	chr2:85553646-85553909(-)$1	1	111	142	11.0917
(((((((..((((.....))))...))))).	chr11:118960839-118961076(+)$1	1	70	101	11.6608
(((.(...(((.(......).)))...).))	chr4:83742100-83742323(-)$1	1	68	99	14.4754
((((((((...((......))))))))))).	chr6:31526031-31526273(+)$1	1	170	201	13.9382
((((((((.((((......)))).))))).)	chrX:47040511-47040776(+)$1	1	194	225	15.5132
(((((((..((((......))))..))))))	chr2:96956073-96956339(-)$1	1	152	183	17.0626
...((((....((......))...))))...	chr18:9950341-9950589(+)$1	1	186	217	12.1429
(((((((((((((.....))))....)))))	chr1:160293122-160293373(-)$1	1	148	179	11.5195
((..((((.((((......))))..))))((	chr16:2053509-2053777(-)$1	1	192	223	12.1634
((..(((((((((......)))))))))..)	chr15:76577889-76578095(-)$1	1	87	118	14.1310
.)))))))(((((......)))))(((..((	chr16:105761-105983(+)$1	1	158	189	12.6488
...(((.((((((......)))))).))).)	chr8:56866356-56866609(+)$1	1	105	136	12.2582
(.(((((.(((.(......).).))))))))	chr10:73590782-73590992(-)$1	1	146	177	12.4947
((((((...((((......)))))))))).)	chr6:118015151-118015410(+)$1	1	107	138	15.1305
(((((((..((((....))))...)))))))	chr1:8044897-8045155(+)$1	1	128	159	11.1155
((((((((.((((......))))...)).))	chr22:38254586-38254814(+)$1	1	129	160	16.1819
((.(((((..(((......))).)))))..)	chr1:155263927-155264208(-)$1	1	142	173	14.0550
((((.(.(.((((......))))).))))))	chr1:32504111-32504321(+)$1	1	35	66	16.4450
.)(((((((((((......)))).)))))))	chr12:56504647-56504900(+)$1	1	190	221	15.7702
((.(((...((((......))))))).))).	chr12:131357569-131357774(+)$1	1	154	185	15.4843
.((((((((((((......))))))))))))	chr3:186503877-186504085(+)$1	1	75	106	14.4022
.(((.(.(.((((......))))).).))))	chr1:224592059-224592348(-)$1	1	147	178	16.0291
.(((((.(((.((......)).))).)))))	chr12:57037226-57037470(-)$1	1	187	218	13.0085
(((.(((((.(((......))).)))))...	chr17:7477514-7477726(+)$1	1	24	55	14.3046
..(((((....(((......)))..))))).	chr6:42937603-42937826(-)$1	1	177	208	13.6168
(...((((((..(......)..))))))...	chr9:131284946-131285196(+)$1	1	74	105	12.7199
(.((.....((((......))))...)).))	chr12:99071173-99071423(+)$1	1	170	201	14.3643
...(((((.((((......)))).)))))..	chr11:62302468-62302735(-)$1	1	110	141	13.3180
(((((((..((((......))))..))))))	chr1:45480942-45481195(+)$1	1	200	231	17.0626
....(((.(((((......))))))))..))	chr10:76978717-76979001(+)$1	1	185	216	13.4116
.((((((.(((((......)))))....)))	chr8:120854000-120854258(-)$1	1	18	49	13.2361
.(((((((.((((......))))))))....	chr10:71136690-71136940(+)$1	1	53	84	13.3240
.((((((..((((......))))....))))	chr16:30080823-30081038(+)$1	1	133	164	16.0230
)))))..))((((......))))..((((((	chr17:79573648-79573927(-)$1	1	178	209	12.1844
.))))((((((((......)))).)))))))	chr3:49135418-49135650(-)$1	1	177	208	12.6197
(((((((((..((......))..))))))))	chr19:6380333-6380587(-)$1	1	82	113	13.6521
((((.....((((......))))..))))).	chr12:64812748-64812963(+)$1	1	22	53	15.0858
.(((((((..(((......))).........	chr2:188361527-188361794(-)$1	1	85	116	13.7163
(((((((....((......))..)))))))(	chr6:160201474-160201695(-)$1	1	40	71	13.7577
((.((((.(((.(......)))).)))))).	chr14:102508684-102508919(+)$1	1	135	166	12.8110
)))((((...((.(......)))...)))))	chr1:20979335-20979564(-)$1	1	113	144	11.2175
..(((((((((.(......).))))))))).	chr11:61564244-61564513(+)$1	1	186	217	11.9897
....((.((((.(......).)))).))...	chr7:103151303-103151553(-)$1	1	140	171	13.5191
(..(((...((((......))))...))).)	chr3:53260670-53260882(-)$1	1	29	60	17.4906
.(((((((((..(......)..)))))))))	chr4:185685917-185686177(-)$1	1	146	177	14.3406
(((((.(((((((......))).))))))))	chr12:76443433-76443637(-)$1	1	161	192	12.6783
(((((((..((((......))))..)))))(	chr7:100887186-100887428(-)$1	1	41	72	15.5159

#PSSM
c : 0.18	e : 0.11	g : 0.11	[ : 0.09	: : 0.05	b : 0.05	i : 0.03	f : 0.03	! : 0.03	# : 0.03	= : 0.01	h : 0.01	% : 0.01	G : 0.01	m : 0.01	" : 0.01	d : 0.01	] : 0.01	+ : 0.01	$ : 0.01	o : 0.01	F : 0.01	
e : 0.15	c : 0.15	g : 0.15	[ : 0.07	f : 0.07	i : 0.05	= : 0.03	b : 0.03	" : 0.03	! : 0.03	# : 0.03	h : 0.01	% : 0.01	G : 0.01	a : 0.01	+ : 0.01	d : 0.01	: : 0.01	F : 0.01	
e : 0.20	g : 0.18	c : 0.11	[ : 0.07	i : 0.07	f : 0.07	b : 0.03	= : 0.03	! : 0.03	" : 0.03	# : 0.03	% : 0.01	: : 0.01	+ : 0.01	d : 0.01	
e : 0.22	g : 0.18	c : 0.13	i : 0.07	d : 0.07	f : 0.07	[ : 0.05	b : 0.03	= : 0.03	# : 0.03	: : 0.01	! : 0.01	" : 0.01	
e : 0.24	g : 0.16	c : 0.11	d : 0.11	i : 0.09	f : 0.09	[ : 0.05	= : 0.03	$ : 0.03	a : 0.01	b : 0.01	
e : 0.20	g : 0.16	c : 0.13	d : 0.11	i : 0.09	f : 0.07	= : 0.03	a : 0.03	$ : 0.03	! : 0.01	" : 0.01	2 : 0.01	b : 0.01	[ : 0.01	
e : 0.16	g : 0.15	d : 0.13	i : 0.09	[ : 0.09	c : 0.07	" : 0.07	! : 0.05	f : 0.05	$ : 0.03	b : 0.01	= : 0.01	2 : 0.01	
! : 0.15	e : 0.09	" : 0.09	i : 0.09	d : 0.09	c : 0.07	g : 0.07	[ : 0.07	b : 0.05	# : 0.05	f : 0.03	a : 0.03	$ : 0.03	= : 0.01	
! : 0.16	[ : 0.15	e : 0.13	" : 0.09	c : 0.07	i : 0.07	b : 0.05	# : 0.05	d : 0.05	g : 0.03	f : 0.03	$ : 0.03	= : 0.01	
d : 0.50	e : 0.09	! : 0.07	c : 0.05	# : 0.05	i : 0.05	[ : 0.03	" : 0.03	f : 0.03	b : 0.01	= : 0.01	
d : 0.49	c : 0.15	e : 0.09	# : 0.05	! : 0.05	i : 0.03	" : 0.01	f : 0.01	a : 0.01	= : 0.01	[ : 0.01	b : 0.01	
d : 0.47	c : 0.13	b : 0.11	e : 0.09	[ : 0.09	! : 0.03	i : 0.01	f : 0.01	= : 0.01	
d : 0.47	c : 0.13	a : 0.13	e : 0.09	b : 0.09	i : 0.01	f : 0.01	= : 0.01	[ : 0.01	
o : 0.86	n : 0.07	m : 0.01	c : 0.01	a : 0.01	
o : 0.90	n : 0.07	m : 0.01	
o : 0.90	n : 0.07	m : 0.01	
o : 0.90	n : 0.07	m : 0.01	
o : 0.90	n : 0.07	d : 0.01	
o : 0.90	d : 0.07	e : 0.01	
d : 0.47	a : 0.13	c : 0.11	e : 0.09	b : 0.09	o : 0.03	i : 0.01	f : 0.01	= : 0.01	
d : 0.47	c : 0.15	e : 0.09	b : 0.09	] : 0.07	2 : 0.03	i : 0.01	f : 0.01	= : 0.01	a : 0.01	
d : 0.47	c : 0.16	e : 0.09	2 : 0.07	i : 0.05	3 : 0.03	f : 0.01	a : 0.01	= : 0.01	] : 0.01	b : 0.01	
d : 0.41	e : 0.11	c : 0.09	i : 0.07	] : 0.07	2 : 0.05	3 : 0.05	f : 0.03	4 : 0.01	= : 0.01	> : 0.01	b : 0.01	
3 : 0.16	2 : 0.13	e : 0.13	i : 0.09	] : 0.09	c : 0.07	f : 0.05	d : 0.05	4 : 0.03	a : 0.03	6 : 0.01	b : 0.01	= : 0.01	: : 0.01	> : 0.01	g : 0.01	
3 : 0.15	c : 0.11	2 : 0.11	d : 0.11	e : 0.09	i : 0.09	] : 0.05	4 : 0.05	f : 0.05	g : 0.05	6 : 0.01	b : 0.01	= : 0.01	: : 0.01	> : 0.01	
e : 0.20	3 : 0.13	i : 0.11	d : 0.11	g : 0.09	c : 0.07	] : 0.07	4 : 0.05	f : 0.03	a : 0.03	6 : 0.01	= : 0.01	> : 0.01	
e : 0.22	g : 0.13	d : 0.13	c : 0.11	i : 0.11	b : 0.07	= : 0.03	f : 0.03	] : 0.03	4 : 0.03	6 : 0.01	3 : 0.01	> : 0.01	
e : 0.20	g : 0.13	i : 0.11	c : 0.09	d : 0.09	b : 0.07	f : 0.07	2 : 0.03	= : 0.03	] : 0.01	6 : 0.01	a : 0.01	! : 0.01	4 : 0.01	8 : 0.01	> : 0.01	
e : 0.16	g : 0.13	c : 0.11	2 : 0.09	i : 0.09	f : 0.07	] : 0.05	3 : 0.05	= : 0.03	d : 0.03	6 : 0.01	! : 0.01	8 : 0.01	F : 0.01	> : 0.01	b : 0.01	4 : 0.01	
e : 0.18	g : 0.15	c : 0.11	i : 0.09	] : 0.07	b : 0.05	2 : 0.05	3 : 0.05	f : 0.05	= : 0.03	8 : 0.03	F : 0.01	> : 0.01	d : 0.01	4 : 0.01	
e : 0.16	c : 0.13	g : 0.13	8 : 0.05	3 : 0.05	f : 0.05	i : 0.05	b : 0.03	: : 0.03	= : 0.03	a : 0.03	] : 0.03	4 : 0.03	2 : 0.01	d : 0.01	5 : 0.01	F : 0.01	> : 0.01	D : 0.01	

#score	729.9604071761775
#seq	53
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_transcript_m1_run2.txt

#BEAR
=:iiiiiiiii[ccc!!bbmmmmbb22ccc]iiiiiiiii	chr1:149858488-149858765(+)$1	277	129	169	12.7557
=============a[ddddoooooodddd]a]========	chr2:27294368-27294613(-)$1	245	168	208	16.5436
####a[ggggggg[eeeeemmmmeeeee]ggggggg]a88	chr8:100904081-100904336(-)$1	255	108	148	11.9694
ccc"""==========cccqqqqqqqqccc]=========	chr7:54825116-54825362(-)$1	246	16	56	11.4754
eeee[dddd!!ccc[bboooooobb22ccc22dddd]eee	chr11:32605279-32605544(+)$1	265	81	121	10.3706
cccggggggg[ccc[ddddmmmmddddcccggggggg22c	chr15:44580970-44581218(+)$1	248	195	235	15.1175
ddddcccccc!!ddddoooooodddd333ccc22ccc]dd	chr7:102119211-102119453(-)$1	242	1	41	11.4153
dd[ggggggg[a"""cccpppppppccc333a]ggggggg	chr11:5290928-5291136(-)$1	208	50	90	11.2551
ggggggg[ccceeeee[bbmmmmbbeeeee4444ccc]gg	chr1:228645377-228645637(-)$1	260	206	246	11.9919
!ccc[ccc[ffffff[cccmmmmccc]ffffffccc]ccc	chr2:170655287-170655538(+)$1	251	70	110	11.5556
8iiiiiiiiiccc22dddd4444ggggggg]gggggggdd	chr11:5275536-5275810(-)$1	274	164	204	10.4176
ee::ffffff[ccc[ddddmmmmdddd4444ccc]fffff	chr7:128379315-128379579(+)$1	264	80	120	11.0798
fff!!eeeee$$$$$cccooooooccc4444eeeee333f	chr12:56510457-56510677(+)$1	220	174	214	12.6555
[ccc!!bb[ccc[ddddrrrrrrrrrdddd]ccc]bb22c	chr2:47403478-47403739(-)$1	261	25	65	10.5052
Jbb[ffffff[ccc[ddddmmmmdddd]ccc333ffffff	chr19:39926463-39926688(-)$1	225	66	106	11.3884
==========[ccc[arrrrrrrrraccc===========	chr17:7215171-7215419(+)$1	248	192	232	14.2797
ee[hhhhhhhh####ddddmmmmddddhhhhhhhh]eeee	chr12:111180494-111180746(-)$1	252	45	85	11.4403
ffhhhhhhhh!!a[ddddammmma]dddd]a4444hhhhh	chr17:8286373-8286608(-)$1	235	175	215	12.1788
ee!!ccc####ccc!!cccmmmmccc]ccc4444ccc]ee	chr12:56510332-56510543(+)$1	211	119	159	14.2921
[ffffff!!gggggggddddllldddd22ggggggg22ff	chr7:75931945-75932194(+)$1	249	169	209	11.6813
dddd!!ggggggg!!cccnnnnnccc22gggggggdddd4	chr15:64385842-64386171(-)$1	329	20	60	11.6953
ggggg[ccc!!bb!!ddddnnnnnddddbb22cccggggg	chr6:27775856-27776113(+)$1	257	161	201	12.8850
b!!a[dddd[ccca[eeeeeooooooeeeee333a]cccd	chr11:67351833-67352041(+)$1	208	15	55	11.4343
hdddd"""ccc!!ddddacccmmmmccc333a]dddd22c	chr2:176046283-176046528(-)$1	245	58	98	10.6240
dddd!!ccc[dddd[ddddmmmmdddd]dddd]ccc]ddd	chr19:8386336-8386554(+)$1	218	160	200	12.4735
ffffff[bb!!ccc[acccooooooccc]a]ccc4444bb	chr6:26285544-26285845(-)$1	301	11	51	12.5455
ccc!!dddda[bb!!ddddnnnnndddd]bb]a]dddd22	chrX:153626619-153626835(+)$1	216	118	158	11.3504
ddddccc[ccc####ddddlllddddccc]ccc]dddd]d	chr7:25164717-25164985(-)$1	268	87	127	13.0591
dd[hhhhhhhh[a!!ddddllldddd4444a]hhhhhhhh	chr19:49999624-49999828(+)$1	204	103	143	12.0966
:============"""cccnnnnnccc]============	chr17:26903758-26904015(-)$1	257	26	66	14.5020
dddd[bb!!eeeee[ddddoooooodddd]eeeee]bb]d	chrX:68892266-68892515(+)$1	249	97	137	11.5233
ccc[bb$$$$$ccc[ddddmmmmdddd]ccc4444bb]cc	chr17:56429328-56429653(-)$1	325	225	265	12.5012
]ccc==========a[cccmmmmccc]a]==========:	chr9:86594964-86595225(-)$1	261	63	103	14.6188
cccdddd"""eeeee[cccmmmmccc4444eeeeedddd]	chr11:5290786-5291006(-)$1	220	164	204	11.1555
dddggggggg!!ffffffooooooffffff333ggggggg	chr2:97559870-97560176(-)$1	306	144	184	12.7015
f[dddd!!ccc####dddd==========cccggggggg[	chr4:53117-53441(+)$1	324	26	66	12.0313
[dddd[==========cccooooooccc]==========d	chr3:52029768-52030022(-)$1	254	4	44	15.3800
[iiiiiiiii[a####bboooooobb333a]iiiiiiiii	chr20:57607210-57607495(-)$1	285	47	87	15.1786
ddiiiiiiiii[dddd[bbmmmmbbddddiiiiiiiii]d	chr12:120875820-120876105(+)$1	285	134	174	13.4642
bccccccccc[ccc[eeeeemmmmeeeee]ccc]ccc]cc	chr6:10747895-10748216(+)$1	321	133	173	12.3079
e####ccc"""ccc[ddddnnnnndddd]ccc333ccc55	chr6:27775504-27775784(-)$1	280	189	229	11.8247
c============!!dddd[bb[a[ccc[===========	chr1:109642831-109643036(+)$1	205	61	101	12.7551
fffff[eeeee"""eeeeemmmmeeeee4444eeeeefff	chr17:16284307-16284595(+)$1	288	41	81	11.5657
::==========!!eeeeemmmmeeeee==========::	chr11:64084824-64085089(-)$1	265	125	165	11.4480
ffff"""ccc[dddd[cccmmmmccc]dddd]ccc4444f	chr8:28387857-28388118(+)$1	261	87	127	11.9902
c[bb[eeeee[gggggggooooooggggggg]eeeee22b	chr1:109968899-109969161(-)$1	262	135	175	11.0470
!!ccc[bb[ccc"""dddd[a==============[dddd	chr3:128902521-128902787(-)$1	266	120	160	12.0560
=========]ccc:eeeeemmmmeeeee===========[	chr11:122932670-122932931(-)$1	261	115	155	13.6860
eeee!!dddd####eeeeemmmmeeeee4444dddd]eee	chr4:103748513-103748787(-)$1	274	68	108	12.1031
ggggggg[dddd"""a[bbmmmmbb]a333dddd4444gg	chr12:112846355-112846560(-)$1	205	93	133	11.8109
ccc[dddd"""cccrrrrrrrrrcccdddd22ccc]====	chr1:224622127-224622390(-)$1	263	115	155	10.6548
g!!hhhhhhhh!!cccccclllccc]ccchhhhhhhh22g	chr12:96252645-96252923(+)$1	278	106	146	10.7161
dd[ggggggg[a"""cccpppppppccc333a]ggggggg	chr11:5290985-5291212(-)$1	227	126	166	11.2551
===========[eeeee[ammmma]eeeee]=========	chr3:197677705-197677948(+)$1	243	126	166	14.6779
gggggg[a"""cccaddddllldddd]a]cccaggggggg	chr1:235291996-235292247(-)$1	251	19	59	14.0540

#otherMatches

#Seq PSSM
CACCGCUUGCUGCGCAAAGGCAACUACGCGGAGCGGGUGG	chr1:149858488-149858765(+)$1	277	129	169	12.7557
CCACGGGCCAGCCCCGCCGUGGCCGUGGCCGUGGCUGGCC	chr2:27294368-27294613(-)$1	245	168	208	16.5436
AAACCUCGGAUGCGUGGCCUUCUGGCCAGGCGUCUGCGAA	chr8:100904081-100904336(-)$1	255	108	148	11.9694
GAGCAAGUGCUUAUUGUAUGAGAACCAAUACCAGUGAGUA	chr7:54825116-54825362(-)$1	246	16	56	11.4754
CGCGCGGCCCAGUUCCCUUUUCCGGUCGGCGUGGUCUUGC	chr11:32605279-32605544(+)$1	265	81	121	10.3706
CCUGGGCUUCUGCCUGCAGGUGUCUGCGGCGAGGCCCCUA	chr15:44580970-44581218(+)$1	248	195	235	15.1175
CAAGAUCCUCCAGCCCAACAGGGGGCGAUGAGCCGAUCCU	chr7:102119211-102119453(-)$1	242	1	41	11.4153
UCACUAGCCUGUGGAGCAAGAUGAAUGUGGAAGAGGCUGG	chr11:5290928-5291136(-)$1	208	50	90	11.2551
CGCGUGCACCGGUUGCUCCGCAAGGGCAACUAUUCGGAGC	chr1:228645377-228645637(-)$1	260	206	246	11.9919
CAAGAGCUGCCGGGACGGUCCCCAUCUUCUUGGAGCGCUU	chr2:170655287-170655538(+)$1	251	70	110	11.5556
AUGGCAAGAAGGUGCUGACUUCCUUGGGAGAUGCCAUAAA	chr11:5275536-5275810(-)$1	274	164	204	10.4176
GCUUCCGGUUGGGCGGUGCUUGCGCGCGUGAGCUGAGCCG	chr7:128379315-128379579(+)$1	264	80	120	11.0798
UAGCGAGGAGACGAAGGCAAGUCCGCCAUACCUCCUGAAC	chr12:56510457-56510677(+)$1	220	174	214	12.6555
AUGCGGCGGAGGGAUCUGGCGGAGGGAGGUGUUUAUGAGG	chr2:47403478-47403739(-)$1	261	25	65	10.5052
CCCUGAAAAGCGGCCAGGGUGGCCCCUAGCUUUCCUUUUC	chr19:39926463-39926688(-)$1	225	66	106	11.3884
UCUUCUCCCCUCACACUACAGCCCUGGUGGGGGAGAAGGG	chr17:7215171-7215419(+)$1	248	192	232	14.2797
UUGUUCUUCUCGUGGUUCCAGUGGGGAGAGAAGGAGGAAG	chr12:111180494-111180746(-)$1	252	45	85	11.4403
CGUUCUUGGGCAUGGUGGCUUCCGACCGCGGGGACCCCGA	chr17:8286373-8286608(-)$1	235	175	215	12.1788
UUUUUGGUUCCUGCGUUGGGAUUCCGUGUACAAUCCAUAG	chr12:56510332-56510543(+)$1	211	119	159	14.2921
UCGACCAGGCCUUCGGGCUGCCCCGGCUGCCGGAGGAGUG	chr7:75931945-75932194(+)$1	249	169	209	11.6813
GUAGUCCUUGAGGCCCCUUCCCUAGGUCCUUCGAGCUACU	chr15:64385842-64386171(-)$1	329	20	60	11.6953
GCUCGCGCCAAGGCCAAGACCCGCUCUUCUCGGGCCGGGC	chr6:27775856-27776113(+)$1	257	161	201	12.8850
CCUCCCUGCACUCCUGACCCCUCCCCGGGUUGCUGCGAGG	chr11:67351833-67352041(+)$1	208	15	55	11.4343
GCGAAUAAGAGCCGGACCGCGCUUGCGCAUUGAGUCCCAC	chr2:176046283-176046528(-)$1	245	58	98	10.6240
GGAGCCAAACGGGCCGGGUCUGAACCCAGCUUCUUUCCUC	chr19:8386336-8386554(+)$1	218	160	200	12.4735
GUAUGCGCGCUUUCAGUCUUCAAUUAGGUCCGAAUUCCCG	chr6:26285544-26285845(-)$1	301	11	51	12.5455
GAGUAAGCGCAGUUGUCGUCUCUUGCGGUGCCGUUGCUGG	chrX:153626619-153626835(+)$1	216	118	158	11.3504
CCGGCGUGUCCUUGGACUUAGAGAGUGGGGACGUCCGGCU	chr7:25164717-25164985(-)$1	268	87	127	13.0591
GGUGCGGACUCGGGGUUGGAUGCCAGGGUGCGGGGUCCGC	chr19:49999624-49999828(+)$1	204	103	143	12.0966
AGGGGGUGUGGUCAGGGCGGGGCAUGCAGGCCACGCCCCC	chr17:26903758-26904015(-)$1	257	26	66	14.5020
aucuuggaagcuaagcagggucgggccugguuaguacuug	chrX:68892266-68892515(+)$1	249	97	137	11.5233
GGUGUCAGUCGGGGACCUGGUUGUAGGGCCCAUGGGGGAC	chr17:56429328-56429653(-)$1	325	225	265	12.5012
CGCGAGAAGGCGGGGGAGGGGAGCCUGCGCUCGUUUUCUG	chr9:86594964-86595225(-)$1	261	63	103	14.6188
UCUGCCAUCCUGGGCAACCCCAAGGUCAAGGCCCAUGGCA	chr11:5290786-5291006(-)$1	220	164	204	11.1555
CGUGGGGGAGCUGGGUAUGUUUGGGUACCCCUCCUCUccu	chr2:97559870-97560176(-)$1	306	144	184	12.7015
GUCGGAAUGAGAACUGCCCAAUCAGGCCCGCAGCCAGAGA	chr4:53117-53441(+)$1	324	26	66	12.0313
GUUCUUCCGGGCUUCGGAACUUUUCUUCGCGGAGCCUGGG	chr3:52029768-52030022(-)$1	254	4	44	15.3800
UAGGAGGCGGUGAUUGGCAGGUCCGCACGCCCCGCCUCUU	chr20:57607210-57607495(-)$1	285	47	87	15.1786
UUUCUCGGCUGCUGGGUCGGUCCCGCCCACAGCUGGGGCG	chr12:120875820-120876105(+)$1	285	134	174	13.4642
CGCGCACGCAAUCGCGUUUCCGGAGAGACCUGGCUGCUGU	chr6:10747895-10748216(+)$1	321	133	173	12.3079
CAAGCGCAGCCGCAAGGAGAGCUACUCCGUGUACGUGUAC	chr6:27775504-27775784(-)$1	280	189	229	11.8247
UGAGUGUGAGUGGACGCGUGAGUGUGUGAGUGUGCGCGCU	chr1:109642831-109643036(+)$1	205	61	101	12.7551
GGGUGAUAAGUGACGCAACACUCGUUGCAUAAAUUUGCGC	chr17:16284307-16284595(+)$1	288	41	81	11.5657
AUGUGCGGGGGGUGGGGUCCCGUGGCUUCCCCCUGCGCCU	chr11:64084824-64085089(-)$1	265	125	165	11.4480
ccugaaugcucccgaugucuucugaucucggaagcuaagc	chr8:28387857-28388118(+)$1	261	87	127	11.9902
GUGAGUUGGGUGCCGGUGGAGUCGUGUUGGUCCUCAGAAU	chr1:109968899-109969161(-)$1	262	135	175	11.0470
AGGCCUGCGUCCGAGUCUCCGCCGCUGCGGGCCCGCUCCG	chr3:128902521-128902787(-)$1	266	120	160	12.0560
UUUUUUGUGGCUUCCUUCGUUAUUGGAGCCAGGCCUACAC	chr11:122932670-122932931(-)$1	261	115	155	13.6860
CAGCUGGCAGUAGUUCCGUCAGAGCGGACAUCUUGUGGCU	chr4:103748513-103748787(-)$1	274	68	108	12.1031
UUUUUAGAUGGCGGGUGAAAAAGUUGAGAAGCCAGAUACU	chr12:112846355-112846560(-)$1	205	93	133	11.8109
GGAAAGGGCCCGGAuccuccuucucccccuccuccuccuc	chr1:224622127-224622390(-)$1	263	115	155	10.6548
GAAACUGCGGCUCGGGACCUGCGGUACCUGCUGUAGUCAC	chr12:96252645-96252923(+)$1	278	106	146	10.7161
UCACUAGCCUGUGGAGCAAGAUGAAUGUGGAAGAGGCUGG	chr11:5290985-5291212(-)$1	227	126	166	11.2551
AGGAACUAUGUCUGGAAGGUACGCGUUUUAAAUAUAGUUC	chr3:197677705-197677948(+)$1	243	126	166	14.6779
GGCCUCUGCUCAGGCUCUGCCGCGGACGACCUCGAGGCCC	chr1:235291996-235292247(-)$1	251	19	59	14.0540

#DB
).(((((((((.(((..((....))..))).)))))))))	chr1:149858488-149858765(+)$1	1	129	169	12.7557
((((((((((((((.((((......)))).).))))))))	chr2:27294368-27294613(-)$1	1	168	208	16.5436
....(.(((((((.(((((....))))).))))))).)..	chr8:100904081-100904336(-)$1	1	108	148	11.9694
(((...(((((((((((((........))).)))))))))	chr7:54825116-54825362(-)$1	1	16	56	11.4754
((((.((((..(((.((......))..)))..)))).)))	chr11:32605279-32605544(+)$1	1	81	121	10.3706
((((((((((.(((.((((....))))))))))))))..)	chr15:44580970-44581218(+)$1	1	195	235	15.1175
((((((((((..((((......))))...)))..))).))	chr7:102119211-102119453(-)$1	1	1	41	11.4153
((.(((((((.(...(((.......)))...).)))))))	chr11:5290928-5291136(-)$1	1	50	90	11.2551
(((((((.((((((((.((....)))))))....))).))	chr1:228645377-228645637(-)$1	1	206	246	11.9919
.(((.(((.((((((.(((....))).))))))))).)))	chr2:170655287-170655538(+)$1	1	70	110	11.5556
.))))))))))))..))))....))))))).)))))))))	chr11:5275536-5275810(-)$1	1	164	204	10.4176
))..((((((.(((.((((....))))....))).)))))	chr7:128379315-128379579(+)$1	1	80	120	11.0798
(((..(((((.....(((......)))....)))))...)	chr12:56510457-56510677(+)$1	1	174	214	12.6555
.(((..((.(((.((((.........)))).))).))..)	chr2:47403478-47403739(-)$1	1	25	65	10.5052
(((.((((((.(((.((((....)))).)))...))))))	chr19:39926463-39926688(-)$1	1	66	106	11.3884
((((((((((.(((.(.........)))))))))))))))	chr17:7215171-7215419(+)$1	1	192	232	14.2797
((.((((((((....((((....)))))))))))).))))	chr12:111180494-111180746(-)$1	1	45	85	11.4403
))((((((((..(.(((((....).)))).)....)))))	chr17:8286373-8286608(-)$1	1	175	215	12.1788
((..(((....(((..(((....))).)))....))).))	chr12:56510332-56510543(+)$1	1	119	159	14.2921
.((((((..(((((((((((...))))..)))))))..))	chr7:75931945-75932194(+)$1	1	169	209	11.6813
((((..(((((((..(((.....)))..))))))))))).	chr15:64385842-64386171(-)$1	1	20	60	11.6953
(((((.(((..((..((((.....))))))..))))))))	chr6:27775856-27776113(+)$1	1	161	201	12.8850
(..(.((((.((((.(((((......)))))...).))))	chr11:67351833-67352041(+)$1	1	15	55	11.4343
(((((...(((..((((((((....)))...).))))..)	chr2:176046283-176046528(-)$1	1	58	98	10.6240
((((..(((.((((.((((....)))).)))).))).)))	chr19:8386336-8386554(+)$1	1	160	200	12.4735
((((((.((..(((.((((......))).).)))....))	chr6:26285544-26285845(-)$1	1	11	51	12.5455
(((..(((((.((..((((.....)))).)).).))))..	chrX:153626619-153626835(+)$1	1	118	158	11.3504
(((((((.(((....((((...))))))).))).)))).)	chr7:25164717-25164985(-)$1	1	87	127	13.0591
((.((((((((.(..((((...))))....).))))))))	chr19:49999624-49999828(+)$1	1	103	143	12.0966
.((((((((((((...(((.....))).))))))))))))	chr17:26903758-26904015(-)$1	1	26	66	14.5020
((((.((..(((((.((((......)))).))))).)).)	chrX:68892266-68892515(+)$1	1	97	137	11.5233
(((.((.....(((.((((....)))).)))....)).))	chr17:56429328-56429653(-)$1	1	225	265	12.5012
.)))(((((((((((.(((....))).).)))))))))).	chr9:86594964-86595225(-)$1	1	63	103	14.6188
(((((((...(((((.(((....)))....))))))))).	chr11:5290786-5291006(-)$1	1	164	204	11.1555
((((((((((..((((((......))))))...)))))))	chr2:97559870-97560176(-)$1	1	144	184	12.7015
(.((((..(((....((((((((((((((((((((((((.	chr4:53117-53441(+)$1	1	26	66	12.0313
.((((.(((((((((((((......))).)))))))))))	chr3:52029768-52030022(-)$1	1	4	44	15.3800
.(((((((((.(....((......))...).)))))))))	chr20:57607210-57607495(-)$1	1	47	87	15.1786
(((((((((((.((((.((....))))))))))))))).)	chr12:120875820-120876105(+)$1	1	134	174	13.4642
((((((((((.(((.(((((....))))).))).))).))	chr6:10747895-10748216(+)$1	1	133	173	12.3079
(....(((...(((.((((.....)))).)))...)))..	chr6:27775504-27775784(-)$1	1	189	229	11.8247
)((((((((((((..((((.((.(.(((.(((((((((((	chr1:109642831-109643036(+)$1	1	61	101	12.7551
(((((.(((((...(((((....)))))....))))))))	chr17:16284307-16284595(+)$1	1	41	81	11.5657
..((((((((((..(((((....)))))))))))))))..	chr11:64084824-64085089(-)$1	1	125	165	11.4480
((((...(((.((((.(((....))).)))).)))....)	chr8:28387857-28388118(+)$1	1	87	127	11.9902
(.((.(((((.(((((((......))))))).)))))..)	chr1:109968899-109969161(-)$1	1	135	175	11.0470
..(((.((.(((...((((.(((((((((((((((.((((	chr3:128902521-128902787(-)$1	1	120	160	12.0560
))))))))).))).(((((....)))))(((((((((((.	chr11:122932670-122932931(-)$1	1	115	155	13.6860
((((..((((....(((((....)))))....)))).)))	chr4:103748513-103748787(-)$1	1	68	108	12.1031
(((((((.((((...(.((....)).)...))))....))	chr12:112846355-112846560(-)$1	1	93	133	11.8109
(((.((((...(((.........)))))))..))).))))	chr1:224622127-224622390(-)$1	1	115	155	10.6548
(..((((((((..((((((...))).)))))))))))..)	chr12:96252645-96252923(+)$1	1	106	146	10.7161
((.(((((((.(...(((.......)))...).)))))))	chr11:5290985-5291212(-)$1	1	126	166	11.2551
(((((((((((.(((((.(....).))))).)))))))))	chr3:197677705-197677948(+)$1	1	126	166	14.6779
((((((.(...((((((((...)))).).)))))))))))	chr1:235291996-235292247(-)$1	1	19	59	14.0540

#PSSM
d : 0.18	c : 0.14	e : 0.10	f : 0.10	= : 0.09	g : 0.09	[ : 0.07	! : 0.03	b : 0.03	: : 0.03	# : 0.01	8 : 0.01	J : 0.01	h : 0.01	] : 0.01	
d : 0.21	c : 0.18	= : 0.10	f : 0.10	e : 0.09	g : 0.07	! : 0.05	: : 0.03	# : 0.03	i : 0.03	[ : 0.03	b : 0.01	
c : 0.20	d : 0.16	= : 0.12	f : 0.09	i : 0.07	[ : 0.07	g : 0.07	! : 0.05	# : 0.03	e : 0.03	b : 0.03	: : 0.01	h : 0.01	
d : 0.16	g : 0.14	= : 0.12	c : 0.09	i : 0.07	h : 0.07	f : 0.07	! : 0.05	[ : 0.05	# : 0.03	e : 0.03	" : 0.01	: : 0.01	a : 0.01	b : 0.01	
= : 0.14	g : 0.14	! : 0.10	[ : 0.09	c : 0.09	f : 0.09	d : 0.09	i : 0.07	h : 0.07	" : 0.03	a : 0.01	b : 0.01	# : 0.01	
= : 0.14	g : 0.12	d : 0.10	c : 0.10	[ : 0.09	i : 0.07	f : 0.07	! : 0.07	h : 0.07	" : 0.05	e : 0.03	b : 0.03	
= : 0.18	g : 0.14	c : 0.14	d : 0.10	i : 0.07	h : 0.07	f : 0.05	e : 0.05	b : 0.05	" : 0.03	[ : 0.03	$ : 0.01	! : 0.01	
= : 0.18	c : 0.12	g : 0.10	d : 0.09	i : 0.07	h : 0.07	[ : 0.05	e : 0.05	b : 0.05	! : 0.05	f : 0.03	" : 0.03	# : 0.01	$ : 0.01	a : 0.01	
= : 0.18	c : 0.16	g : 0.10	d : 0.09	i : 0.07	h : 0.07	" : 0.07	[ : 0.05	e : 0.05	f : 0.03	! : 0.03	# : 0.01	b : 0.01	$ : 0.01	
= : 0.16	c : 0.16	g : 0.12	i : 0.07	e : 0.07	h : 0.07	" : 0.07	! : 0.05	f : 0.05	[ : 0.03	d : 0.03	# : 0.01	a : 0.01	$ : 0.01	] : 0.01	
[ : 0.20	c : 0.16	= : 0.14	! : 0.10	g : 0.05	h : 0.05	e : 0.05	" : 0.05	i : 0.03	$ : 0.03	# : 0.03	d : 0.03	f : 0.01	
c : 0.30	= : 0.12	! : 0.09	[ : 0.07	g : 0.07	# : 0.07	a : 0.05	e : 0.05	d : 0.05	b : 0.03	f : 0.01	$ : 0.01	" : 0.01	
c : 0.29	= : 0.10	" : 0.09	# : 0.09	g : 0.07	d : 0.07	e : 0.07	! : 0.05	f : 0.03	a : 0.03	b : 0.03	$ : 0.01	[ : 0.01	
c : 0.25	d : 0.10	" : 0.10	! : 0.10	# : 0.09	e : 0.07	= : 0.05	a : 0.03	[ : 0.03	f : 0.03	g : 0.03	2 : 0.01	$ : 0.01	: : 0.01	
[ : 0.23	e : 0.14	d : 0.10	! : 0.10	" : 0.09	# : 0.07	c : 0.03	= : 0.03	f : 0.03	g : 0.03	a : 0.03	2 : 0.01	$ : 0.01	r : 0.01	
d : 0.41	e : 0.16	c : 0.09	[ : 0.07	a : 0.05	! : 0.03	= : 0.03	g : 0.03	b : 0.01	" : 0.01	f : 0.01	# : 0.01	r : 0.01	
d : 0.40	c : 0.25	e : 0.14	[ : 0.05	b : 0.03	r : 0.03	! : 0.01	o : 0.01	f : 0.01	g : 0.01	
d : 0.36	c : 0.25	e : 0.12	b : 0.09	r : 0.05	o : 0.03	a : 0.01	f : 0.01	g : 0.01	[ : 0.01	
d : 0.34	c : 0.20	e : 0.12	o : 0.10	b : 0.07	r : 0.05	p : 0.03	a : 0.03	n : 0.01	
m : 0.40	o : 0.18	n : 0.09	l : 0.07	r : 0.05	p : 0.03	e : 0.03	[ : 0.03	q : 0.01	4 : 0.01	d : 0.01	c : 0.01	= : 0.01	
m : 0.41	o : 0.20	l : 0.09	n : 0.09	r : 0.05	p : 0.03	q : 0.01	4 : 0.01	c : 0.01	= : 0.01	b : 0.01	a : 0.01	
m : 0.43	o : 0.20	l : 0.09	n : 0.09	r : 0.05	p : 0.03	= : 0.03	q : 0.01	4 : 0.01	b : 0.01	
m : 0.43	o : 0.18	n : 0.09	d : 0.07	r : 0.05	p : 0.03	= : 0.03	q : 0.01	4 : 0.01	l : 0.01	[ : 0.01	c : 0.01	
d : 0.20	o : 0.16	c : 0.14	b : 0.09	e : 0.09	n : 0.07	a : 0.05	p : 0.03	r : 0.03	m : 0.03	= : 0.03	q : 0.01	g : 0.01	
d : 0.25	c : 0.18	b : 0.10	e : 0.10	o : 0.09	p : 0.03	g : 0.03	r : 0.03	] : 0.03	= : 0.03	q : 0.01	m : 0.01	f : 0.01	[ : 0.01	
d : 0.32	c : 0.27	e : 0.14	2 : 0.03	g : 0.03	= : 0.03	] : 0.03	q : 0.01	r : 0.01	a : 0.01	o : 0.01	f : 0.01	b : 0.01	
d : 0.29	c : 0.20	e : 0.16	] : 0.09	2 : 0.05	3 : 0.03	g : 0.03	4 : 0.03	= : 0.03	q : 0.01	f : 0.01	a : 0.01	
c : 0.25	d : 0.18	e : 0.16	4 : 0.07	] : 0.07	3 : 0.05	f : 0.03	g : 0.03	2 : 0.03	a : 0.03	= : 0.03	h : 0.01	
c : 0.18	d : 0.14	] : 0.12	3 : 0.10	4 : 0.10	= : 0.09	e : 0.07	g : 0.05	f : 0.03	h : 0.01	2 : 0.01	b : 0.01	[ : 0.01	
c : 0.20	= : 0.14	4 : 0.10	] : 0.09	g : 0.09	3 : 0.07	d : 0.07	e : 0.05	f : 0.03	h : 0.03	b : 0.03	a : 0.03	i : 0.01	
c : 0.14	= : 0.14	] : 0.12	4 : 0.10	g : 0.09	3 : 0.07	a : 0.05	2 : 0.05	e : 0.05	d : 0.05	h : 0.03	f : 0.01	b : 0.01	i : 0.01	
= : 0.18	c : 0.16	4 : 0.10	] : 0.09	g : 0.09	i : 0.05	2 : 0.05	a : 0.05	e : 0.05	3 : 0.05	h : 0.03	d : 0.03	f : 0.01	
= : 0.20	c : 0.14	g : 0.10	e : 0.09	] : 0.07	4 : 0.07	3 : 0.07	i : 0.05	d : 0.05	h : 0.05	a : 0.03	2 : 0.01	f : 0.01	
= : 0.20	g : 0.18	c : 0.14	e : 0.09	d : 0.07	4 : 0.07	i : 0.05	3 : 0.05	h : 0.05	] : 0.05	2 : 0.01	
= : 0.20	g : 0.18	c : 0.16	d : 0.09	e : 0.09	4 : 0.07	i : 0.05	h : 0.05	] : 0.03	f : 0.01	a : 0.01	3 : 0.01	
= : 0.18	g : 0.18	d : 0.12	c : 0.12	] : 0.07	i : 0.05	e : 0.05	h : 0.05	4 : 0.05	f : 0.03	b : 0.03	[ : 0.01	
= : 0.20	g : 0.14	c : 0.10	d : 0.10	] : 0.09	i : 0.05	b : 0.05	e : 0.05	h : 0.05	4 : 0.05	f : 0.03	3 : 0.01	2 : 0.01	
= : 0.20	g : 0.12	2 : 0.10	d : 0.10	] : 0.09	i : 0.05	e : 0.05	c : 0.05	f : 0.05	4 : 0.05	h : 0.03	a : 0.01	3 : 0.01	b : 0.01	
= : 0.18	g : 0.14	2 : 0.10	d : 0.10	e : 0.07	c : 0.07	f : 0.07	] : 0.05	i : 0.03	h : 0.03	8 : 0.01	3 : 0.01	b : 0.01	5 : 0.01	: : 0.01	4 : 0.01	
d : 0.16	g : 0.14	= : 0.12	c : 0.10	f : 0.10	e : 0.07	i : 0.03	h : 0.03	b : 0.03	: : 0.03	[ : 0.03	8 : 0.01	4 : 0.01	2 : 0.01	] : 0.01	5 : 0.01	

#score	679.5442026532386
#seq	55
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF469SRC_SAFB_CDS_m1_run2.txt

#BEAR
dcccbb"""bb$$$$$a[ccclllccc]a4444bb333b	chr1:78098338-78098678(-)$1	340	159	198	22.4621
===========ccc!!cccooooooccc4444ccc]===	chr3:50005781-50006047(+)$1	266	209	248	19.0197
[ccc$$$$$ffffff[a[bblllbbaffffffccc]a44	chr21:38538203-38538458(+)$1	255	163	202	23.6736
dddd%%%%%%ffffff[ccclllccc]ffffff333ddd	chr1:203767352-203767657(+)$1	305	56	95	20.6074

#otherMatches

#Seq PSSM
AAAGGGAAAUUAAAAAGGUGAAUGUCAGUGAGGAAGGGC	chr1:78098338-78098678(-)$1	340	159	198	22.4621
AGAGUUCAGAUGCUGGUCUGUUUAAAGAAGAAGGCGGUC	chr3:50005781-50006047(+)$1	266	209	248	19.0197
AGGAUGCAAAUUACAAGCGAGUCUCCUGUAAUUCCCCCA	chr21:38538203-38538458(+)$1	255	163	202	23.6736
UGUCAAGCAUGCUUUAAUUCCUGGAACUAGAGCCAAGAC	chr1:203767352-203767657(+)$1	305	56	95	20.6074

#DB
((((((...((.....(.(((...))).)....))...)	chr1:78098338-78098678(-)$1	1	159	198	22.4621
((((((((((((((..(((......)))....))).)))	chr3:50005781-50006047(+)$1	1	209	248	19.0197
.(((.....((((((.(.((...)))))))))))).)..	chr21:38538203-38538458(+)$1	1	163	202	23.6736
((((......((((((.(((...))).))))))...)))	chr1:203767352-203767657(+)$1	1	56	95	20.6074

#PSSM
d : 0.50	= : 0.25	[ : 0.25	
c : 0.50	= : 0.25	d : 0.25	
c : 0.50	= : 0.25	d : 0.25	
c : 0.50	= : 0.25	d : 0.25	
b : 0.25	= : 0.25	$ : 0.25	% : 0.25	
b : 0.25	= : 0.25	$ : 0.25	% : 0.25	
" : 0.25	= : 0.25	$ : 0.25	% : 0.25	
" : 0.25	= : 0.25	$ : 0.25	% : 0.25	
" : 0.25	= : 0.25	$ : 0.25	% : 0.25	
b : 0.25	= : 0.25	f : 0.25	% : 0.25	
f : 0.50	b : 0.25	= : 0.25	
f : 0.50	$ : 0.25	c : 0.25	
f : 0.50	$ : 0.25	c : 0.25	
f : 0.50	$ : 0.25	c : 0.25	
f : 0.50	$ : 0.25	! : 0.25	
$ : 0.25	! : 0.25	[ : 0.25	f : 0.25	
a : 0.50	c : 0.25	[ : 0.25	
[ : 0.50	c : 0.50	
c : 0.75	b : 0.25	
c : 0.50	o : 0.25	b : 0.25	
l : 0.50	c : 0.25	o : 0.25	
l : 0.75	o : 0.25	
l : 0.75	o : 0.25	
l : 0.25	o : 0.25	b : 0.25	c : 0.25	
c : 0.50	o : 0.25	b : 0.25	
c : 0.75	a : 0.25	
c : 0.50	f : 0.25	] : 0.25	
f : 0.50	] : 0.25	c : 0.25	
f : 0.50	a : 0.25	4 : 0.25	
4 : 0.50	f : 0.50	
4 : 0.50	f : 0.50	
4 : 0.50	f : 0.50	
c : 0.50	4 : 0.25	f : 0.25	
c : 0.50	b : 0.25	3 : 0.25	
c : 0.50	b : 0.25	3 : 0.25	
3 : 0.50	] : 0.50	
3 : 0.25	= : 0.25	a : 0.25	d : 0.25	
3 : 0.25	= : 0.25	4 : 0.25	d : 0.25	
b : 0.25	= : 0.25	4 : 0.25	d : 0.25	

#score	85.763078863825
#seq	4
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_UTR_m2_run2.txt

#BEAR
ddd"""cccooooooccc333d	chr6:26055910-26056117(-)$1	207	42	64	14.1418
="""ccc[aooooooa]ccc44	chr6:26216376-26216595(-)$1	219	141	163	13.5579
ddd"""cccooooooccc333d	chr6:26055872-26056103(-)$1	231	28	50	14.1418
fffffddddoooooodddd]ff	chr1:149857633-149857849(-)$1	216	55	77	10.0352
dd[ffffffooooooffffffd	chr6:26124801-26125016(+)$1	215	169	191	11.5448
dd[ffffffooooooffffffd	chr6:26124816-26125063(+)$1	247	154	176	11.5448
DDDbb[cccooooooccc]bb:	chr6:27861562-27861766(+)$1	204	14	36	10.4568
]accc[cccooooooccc]ccc	chr11:118965522-118965771(-)$1	249	57	79	13.7308
cc!!ccc[aooooooa]ccccc	chr6:26198977-26199246(-)$1	269	33	55	13.2692
cc[ccc[cccmmmmcccccc]c	chr6:26123600-26123855(-)$1	255	22	44	7.5749
dddd!!cccooooooccc4444	chr1:149857670-149857939(-)$1	269	104	126	13.8718
ddddeeeeeooooooeeeee]d	chr6:26045961-26046195(+)$1	234	76	98	10.5533
======a[aooooooa]a]===	chr1:149858918-149859185(-)$1	267	183	205	13.0857
hhhh[bbbboooooobb]bb]h	chr6:27778156-27778366(+)$1	210	145	167	9.3288
eeccc[cccoooooocccccc:	chr1:22054283-22054610(-)$1	327	218	240	12.4664
"""bb[cccoooooocccbb22	chr6:26197341-26197588(-)$1	247	97	119	13.2379
ggggg[a[aooooooa]agggg	chr6:26217542-26217749(+)$1	207	58	80	12.6834
a!!ffffffooooooffffff2	chr6:27833422-27833675(+)$1	253	10	32	11.6010
iiii[bbbboooooobb]bb]i	chr6:27778166-27778412(+)$1	246	135	157	10.5078
d::bb[cccooooooccc]bb:	chr6:26200092-26200300(+)$1	208	30	52	10.9267
="""ccc[aooooooa]ccc44	chr6:26216372-26216576(-)$1	204	122	144	13.5579
!dddd[cccooooooccc]ddd	chr6:26022126-26022351(+)$1	225	196	218	13.3245
da[bb[cccooooooccc]bb5	chr6:26200104-26200315(+)$1	211	18	40	13.1482
###bb[cccooooooccc]bbg	chr6:27107322-27107555(+)$1	233	182	204	13.5255
ccc"""cccooooooccc333c	chr6:27834471-27834760(-)$1	289	28	50	14.2796
::ddddcccooooooccc]ddd	chr6:27806730-27806944(+)$1	214	154	176	10.9777
fff[eeeeeooooooeeeee]f	chr6:27857994-27858239(-)$1	245	49	71	10.0716
i"""ccc[aooooooa]ccc44	chr6:26216342-26216572(-)$1	230	118	140	13.5333
dd[ffffffooooooffffffd	chr6:26124779-26125000(+)$1	221	191	213	11.5448
d::bb[cccooooooccc]bb:	chr6:26200100-26200304(+)$1	204	22	44	10.9267
$$$$$ddddoooooodddd666	chr6:26124312-26124580(+)$1	268	175	197	9.4519
hh!!a!!bboooooobb22a22	chr1:149783661-149783992(-)$1	331	250	272	11.0918
a[gggggggooooooggggggg	chr6:27115139-27115405(+)$1	266	68	90	11.9347
ccc[a!!cccnnnnnccc]a]c	chr6:26158665-26158934(+)$1	269	42	64	9.0098
!dddd[cccooooooccc]ddd	chr6:26022151-26022377(+)$1	226	171	193	13.3245
cc[bb[cccoooooocccbb]c	chr1:149858807-149859059(+)$1	252	171	193	13.5561
#ffffff[aooooooa]fffff	chr6:25726191-25726442(-)$1	251	221	243	11.4855
:dddd[cccooooooccc]ddd	chr6:26027025-26027257(-)$1	232	191	213	12.4051
dddd!!cccooooooccc4444	chr1:149857649-149857870(-)$1	221	35	57	13.8718
fffff[cccooooooccc22ff	chr6:27860378-27860621(-)$1	243	198	220	12.4858
::gggggggooooooggggggg	chr6:27107261-27107520(+)$1	259	192	214	10.2339
ggggg[a[aooooooa]agggg	chr6:26217549-26217763(+)$1	214	51	73	12.6834
$ddddddddoooooodddd]dd	chr6:26204764-26205046(+)$1	282	81	103	10.2883

#otherMatches

#Seq PSSM
GCCCAAGGCCGCUAAGCCCAAG	chr6:26055910-26056117(-)$1	207	42	64	14.1418
UUCAGAGCCACUCAAGUCUCAC	chr6:26216376-26216595(-)$1	219	141	163	13.5579
GCCCAAGGCCGCUAAGCCCAAG	chr6:26055872-26056103(-)$1	231	28	50	14.1418
UGGCGCUCGCUCGCUCGAGUCG	chr1:149857633-149857849(-)$1	216	55	77	10.0352
CACUAAGGUAAGUUAAUUUUAU	chr6:26124801-26125016(+)$1	215	169	191	11.5448
CACUAAGGUAAGUUAAUUUUAU	chr6:26124816-26125063(+)$1	247	154	176	11.5448
UCCGAGGGCACAAAGGCCGUCA	chr6:27861562-27861766(+)$1	204	14	36	10.4568
UCGGGCGGCAAGAAGGCCACCC	chr11:118965522-118965771(-)$1	249	57	79	13.7308
GCCAUCCGCAACGACGAGGAGC	chr6:26198977-26199246(-)$1	269	33	55	13.2692
CCUGCUGCUUCCCGGAGAGCUG	chr6:26123600-26123855(-)$1	255	22	44	7.5749
UCACCAAGUACACCAGCUCCAA	chr1:149857670-149857939(-)$1	269	104	126	13.8718
GAAAGGGCAUAAGUCUGCCCGU	chr6:26045961-26046195(+)$1	234	76	98	10.5533
GCUGAUCACGAAAUAGCGCAUU	chr1:149858918-149859185(-)$1	267	183	205	13.0857
UCAGAGCCACCCACAUGCGCGC	chr6:27778156-27778366(+)$1	210	145	167	9.3288
AAGAGAGACAAUUUAGUCCUUA	chr1:22054283-22054610(-)$1	327	218	240	12.4664
UUAGAAGUUCGCAAUGGCUCGU	chr6:26197341-26197588(-)$1	247	97	119	13.2379
UUACUAGUCAAAUCCGUCAGUG	chr6:26217542-26217749(+)$1	207	58	80	12.6834
GUAACCAUCGCUCAGGGUGGUG	chr6:27833422-27833675(+)$1	253	10	32	11.6010
UCAGAGCCACCCACAUGCGCGC	chr6:27778166-27778412(+)$1	246	135	157	10.5078
UCAGAGGGCACCAAGGCCGUCA	chr6:26200092-26200300(+)$1	208	30	52	10.9267
UUCAGAGCCACUCAAGUCUCAC	chr6:26216372-26216576(-)$1	204	122	144	13.5579
UGUGUAAUUAAGAUGAAUGAUA	chr6:26022126-26022351(+)$1	225	196	218	13.3245
UCAGAGGGCACCAAGGCCGUCA	chr6:26200104-26200315(+)$1	211	18	40	13.1482
CAUUGUCAGUGAGUUCUGUCAU	chr6:27107322-27107555(+)$1	233	182	204	13.5255
GCCCAAGGCAGUUAAGCCGAAG	chr6:27834471-27834760(-)$1	289	28	50	14.2796
CUCAGUCUUCCCAAAGAGAACU	chr6:27806730-27806944(+)$1	214	154	176	10.9777
UGCGCGUCGUAUCCGUGGCGAG	chr6:27857994-27858239(-)$1	245	49	71	10.0716
UUCAGAGCCACUCAAGUCUCAC	chr6:26216342-26216572(-)$1	230	118	140	13.5333
CACUAAGGUAAGUUAAUUUUAU	chr6:26124779-26125000(+)$1	221	191	213	11.5448
UCAGAGGGCACCAAGGCCGUCA	chr6:26200100-26200304(+)$1	204	22	44	10.9267
AAAGCUCGCGCCAAAGCGAAAU	chr6:26124312-26124580(+)$1	268	175	197	9.4519
UGAAGCAGGUCCACCCCGACAC	chr1:149783661-149783992(-)$1	331	250	272	11.0918
GUCACCAUCGCGCAGGGUGGUG	chr6:27115139-27115405(+)$1	266	68	90	11.9347
CGGGGGAGCUGGCCAAGCACGC	chr6:26158665-26158934(+)$1	269	42	64	9.0098
UGUGUAAUUAAGAUGAAUGAUA	chr6:26022151-26022377(+)$1	226	171	193	13.3245
CUAAUGCGCUAUUUCGUGAUCA	chr1:149858807-149859059(+)$1	252	171	193	13.5561
CAAAUGCCCGUUUAAGCGCAUU	chr6:25726191-25726442(-)$1	251	221	243	11.4855
UUACUCGGCUAUUCUGCCUAGU	chr6:26027025-26027257(-)$1	232	191	213	12.4051
UCACCAAGUACACCAGCUCCAA	chr1:149857649-149857870(-)$1	221	35	57	13.8718
UGGCCGAGUUCAAGCACUGAGG	chr6:27860378-27860621(-)$1	243	198	220	12.4858
GCUUUCAACAAAAGAGUUGAAA	chr6:27107261-27107520(+)$1	259	192	214	10.2339
UUACUAGUCAAAUCCGUCAGUG	chr6:26217549-26217763(+)$1	214	51	73	12.6834
GCGGCUAUUUUCGUUGGUGUGU	chr6:26204764-26205046(+)$1	282	81	103	10.2883

#DB
(((...(((......)))...)	chr6:26055910-26056117(-)$1	1	42	64	14.1418
(...(((.(......).)))..	chr6:26216376-26216595(-)$1	1	141	163	13.5579
(((...(((......)))...)	chr6:26055872-26056103(-)$1	1	28	50	14.1418
(((((((((......)))).))	chr1:149857633-149857849(-)$1	1	55	77	10.0352
((.((((((......)))))))	chr6:26124801-26125016(+)$1	1	169	191	11.5448
((.((((((......)))))))	chr6:26124816-26125063(+)$1	1	154	176	11.5448
(((((.(((......))).)).	chr6:27861562-27861766(+)$1	1	14	36	10.4568
.)(((.(((......))).)))	chr11:118965522-118965771(-)$1	1	57	79	13.7308
((..(((.(......).)))))	chr6:26198977-26199246(-)$1	1	33	55	13.2692
((.(((.(((....)))))).)	chr6:26123600-26123855(-)$1	1	22	44	7.5749
((((..(((......)))....	chr1:149857670-149857939(-)$1	1	104	126	13.8718
(((((((((......))))).)	chr6:26045961-26046195(+)$1	1	76	98	10.5533
(((((((.(......).).)))	chr1:149858918-149859185(-)$1	1	183	205	13.0857
((((.((((......)).)).)	chr6:27778156-27778366(+)$1	1	145	167	9.3288
))(((.(((......)))))).	chr1:22054283-22054610(-)$1	1	218	240	12.4664
...((.(((......)))))..	chr6:26197341-26197588(-)$1	1	97	119	13.2379
(((((.(.(......).)))))	chr6:26217542-26217749(+)$1	1	58	80	12.6834
(..((((((......)))))).	chr6:27833422-27833675(+)$1	1	10	32	11.6010
((((.((((......)).)).)	chr6:27778166-27778412(+)$1	1	135	157	10.5078
)..((.(((......))).)).	chr6:26200092-26200300(+)$1	1	30	52	10.9267
(...(((.(......).)))..	chr6:26216372-26216576(-)$1	1	122	144	13.5579
.((((.(((......))).)))	chr6:26022126-26022351(+)$1	1	196	218	13.3245
((.((.(((......))).)).	chr6:26200104-26200315(+)$1	1	18	40	13.1482
...((.(((......))).)))	chr6:27107322-27107555(+)$1	1	182	204	13.5255
(((...(((......)))...)	chr6:27834471-27834760(-)$1	1	28	50	14.2796
..(((((((......))).)))	chr6:27806730-27806944(+)$1	1	154	176	10.9777
(((.(((((......))))).)	chr6:27857994-27858239(-)$1	1	49	71	10.0716
(...(((.(......).)))..	chr6:26216342-26216572(-)$1	1	118	140	13.5333
((.((((((......)))))))	chr6:26124779-26125000(+)$1	1	191	213	11.5448
)..((.(((......))).)).	chr6:26200100-26200304(+)$1	1	22	44	10.9267
.....((((......))))...	chr6:26124312-26124580(+)$1	1	175	197	9.4519
((..(..((......))..)..	chr1:149783661-149783992(-)$1	1	250	272	11.0918
(.(((((((......)))))))	chr6:27115139-27115405(+)$1	1	68	90	11.9347
(((.(..(((.....))).).)	chr6:26158665-26158934(+)$1	1	42	64	9.0098
.((((.(((......))).)))	chr6:26022151-26022377(+)$1	1	171	193	13.3245
((.((.(((......))))).)	chr1:149858807-149859059(+)$1	1	171	193	13.5561
.((((((.(......).)))))	chr6:25726191-25726442(-)$1	1	221	243	11.4855
.((((.(((......))).)))	chr6:26027025-26027257(-)$1	1	191	213	12.4051
((((..(((......)))....	chr1:149857649-149857870(-)$1	1	35	57	13.8718
(((((.(((......)))..))	chr6:27860378-27860621(-)$1	1	198	220	12.4858
..(((((((......)))))))	chr6:27107261-27107520(+)$1	1	192	214	10.2339
(((((.(.(......).)))))	chr6:26217549-26217763(+)$1	1	51	73	12.6834
.((((((((......)))).))	chr6:26204764-26205046(+)$1	1	81	103	10.2883

#PSSM
d : 0.25	c : 0.11	= : 0.06	f : 0.06	: : 0.06	h : 0.04	g : 0.04	a : 0.04	i : 0.04	! : 0.04	# : 0.04	$ : 0.04	D : 0.02	] : 0.02	e : 0.02	" : 0.02	
d : 0.27	c : 0.11	" : 0.09	f : 0.09	: : 0.09	a : 0.04	h : 0.04	g : 0.04	D : 0.02	= : 0.02	e : 0.02	! : 0.02	i : 0.02	# : 0.02	$ : 0.02	[ : 0.02	
d : 0.23	[ : 0.13	" : 0.09	f : 0.09	c : 0.09	g : 0.09	! : 0.06	: : 0.04	D : 0.02	= : 0.02	h : 0.02	i : 0.02	# : 0.02	$ : 0.02	
d : 0.18	f : 0.16	b : 0.16	" : 0.13	g : 0.09	c : 0.06	! : 0.04	[ : 0.04	= : 0.02	h : 0.02	i : 0.02	$ : 0.02	
c : 0.16	f : 0.16	b : 0.16	d : 0.11	g : 0.09	" : 0.06	! : 0.04	e : 0.04	[ : 0.04	a : 0.04	= : 0.02	$ : 0.02	
[ : 0.34	c : 0.11	f : 0.11	d : 0.09	! : 0.09	" : 0.06	e : 0.04	b : 0.04	g : 0.04	= : 0.02	
c : 0.53	f : 0.11	d : 0.06	a : 0.06	e : 0.04	b : 0.04	! : 0.04	g : 0.04	[ : 0.02	
c : 0.48	[ : 0.18	f : 0.09	d : 0.06	b : 0.06	e : 0.04	g : 0.04	
c : 0.48	a : 0.18	f : 0.09	d : 0.06	b : 0.06	e : 0.04	g : 0.04	
o : 0.95	c : 0.04	
o : 0.95	m : 0.02	n : 0.02	
o : 0.95	m : 0.02	n : 0.02	
o : 0.95	m : 0.02	n : 0.02	
o : 0.95	m : 0.02	n : 0.02	
o : 0.95	c : 0.02	n : 0.02	
c : 0.48	a : 0.18	f : 0.09	d : 0.06	b : 0.06	e : 0.04	g : 0.04	
c : 0.48	] : 0.18	f : 0.09	d : 0.06	b : 0.06	e : 0.04	g : 0.04	
c : 0.58	f : 0.11	d : 0.06	a : 0.06	e : 0.04	] : 0.04	g : 0.04	2 : 0.02	
] : 0.27	c : 0.13	f : 0.11	b : 0.09	g : 0.09	3 : 0.06	d : 0.06	4 : 0.04	e : 0.04	2 : 0.04	
b : 0.20	c : 0.16	f : 0.11	g : 0.09	d : 0.09	3 : 0.06	] : 0.04	4 : 0.04	e : 0.04	a : 0.04	= : 0.02	6 : 0.02	2 : 0.02	
f : 0.16	] : 0.16	4 : 0.11	b : 0.11	d : 0.11	g : 0.09	3 : 0.06	c : 0.06	2 : 0.04	= : 0.02	6 : 0.02	
d : 0.25	c : 0.13	4 : 0.11	g : 0.11	f : 0.09	: : 0.09	2 : 0.06	= : 0.02	h : 0.02	i : 0.02	5 : 0.02	6 : 0.02	

#score	514.9753386683886
#seq	43
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_CDS_m3_run1.txt

#BEAR
:bb!!a[cccooooooccca22bb	chr3:197680772-197680975(+)$1	203	99	123	12.2801
==========oooooo========	chr8:21862488-21862759(+)$1	271	143	167	13.6950
cc[gggggggooooooggggggg2	chr4:110384148-110384408(+)$1	260	152	176	13.1294
ggggg[ddddoooooodddd22gg	chr3:33729722-33729961(-)$1	239	48	72	12.4618
cc"""eeeeeooooooeeeee22c	chr10:88719286-88719532(+)$1	246	116	140	13.0244
ee"""a!!bboooooobb22a333	chr2:43547496-43547766(-)$1	270	78	102	13.3451
===[ffffffooooooffffff]=	chr19:36279072-36279328(+)$1	256	40	64	12.7656
Iccc[eeeeeooooooeeeee]cc	chr17:73131992-73132259(-)$1	267	206	230	11.5155
###gggggggooooooggggggg]	chr17:57751018-57751233(+)$1	215	87	111	13.0131
fff!!eeeeeooooooeeeeefff	chrX:123019844-123020098(+)$1	254	30	54	12.4182
:eeeee[cccooooooccc]eeee	chr22:39918475-39918734(+)$1	259	163	187	12.4141
fff!!a[cccooooooccc22a22	chr3:10342629-10342910(-)$1	281	57	81	13.9029
$$dddd[cccooooooccc]dddd	chr3:184082876-184083115(+)$1	239	38	62	12.4572
ffffff!!bboooooobb]fffff	chr15:56386369-56386660(-)$1	291	201	225	11.6156
ggggg[bbbboooooobb]bb]gg	chr5:34908683-34909000(-)$1	317	286	310	11.4027
fffff!!cccooooooccc]ffff	chr19:36641053-36641334(+)$1	281	212	236	13.2601
d"""ccc[bboooooobb]ccc66	chr17:27076173-27076426(+)$1	253	15	39	11.5891
dddd!!ddddoooooodddd22dd	chr3:186507601-186507897(-)$1	296	128	152	12.0013
ee!!dddd[aooooooadddd]ee	chr20:34292248-34292513(-)$1	265	194	218	12.3431
ddd[ccc[bboooooobb]ccc33	chr5:137710688-137710959(+)$1	271	100	124	12.6052
ccddddacccooooooccc333a]	chr20:2442240-2442518(-)$1	278	76	100	13.7141
gggggggcccooooooccc4444g	chr20:20013149-20013394(+)$1	245	60	84	14.1942
bb:gggggggoooooogggggggd	chr7:107626601-107626868(-)$1	267	112	136	11.5866
hhhhhh[cccooooooccchhhhh	chr12:116413216-116413439(-)$1	223	141	165	11.5661
bb!!ffffffooooooffffff22	chr8:48701438-48701711(-)$1	273	31	55	12.1102
eeeeeeeeeeooooooeeeeeddd	chr16:46710409-46710667(-)$1	258	118	142	11.7852
d"""ffffffooooooffffff22	chr7:150731271-150731532(+)$1	261	28	52	12.3401
ggggggg!!ccclllccc333ggg	chr19:3980566-3980773(-)$1	207	9	33	8.5195
eeegggggggooooooggggggg]	chr10:75525533-75525775(+)$1	242	182	206	13.0776
eee[ccc[bboooooobb333ccc	chr17:26947964-26948240(-)$1	276	136	160	12.7583
fffff!!cccooooooccc333ff	chr16:84163163-84163431(-)$1	268	153	177	13.8271
ddccca[cccooooooccc]a888	chr20:31291105-31291365(-)$1	260	218	242	12.7428
dd"""eeeeeooooooeeeee]dd	chr14:97000725-97000964(+)$1	239	84	108	12.7294
!dddd!!cccooooooccc22ddd	chr11:118886450-118886698(-)$1	248	189	213	13.0381
"ccc[ddddaooooooa]ddddcc	chr11:9459263-9459541(+)$1	278	36	60	11.9589
e[dddd[cccooooooccc]dddd	chr5:170818609-170818837(+)$1	228	193	217	12.9835
eeeccc[cccooooooccc]cccG	chr10:88719657-88719873(+)$1	216	141	165	13.0922
ddd"""ddddoooooodddd333d	chr5:154346325-154346577(+)$1	252	70	94	12.9636
dffffff!!aooooooa22fffff	chr1:78162854-78163121(-)$1	267	157	181	11.4410
[bb[ffffffooooooffffff]b	chr17:27185986-27186232(+)$1	246	180	204	11.9074
========cccnnnnnccc]====	chr21:34876337-34876620(-)$1	283	225	249	9.3086
ddd!!a[cccooooooccc]a22d	chr11:111955862-111956243(-)$1	381	97	121	14.3870
cc[ddddcccooooooccc]dddd	chr11:47656119-47656354(-)$1	235	157	181	12.8552
iiiiieeeeeooooooeeeee]ii	chrX:100881000-100881311(+)$1	311	217	241	12.8527
eeee[eeeeeooooooeeeeeeee	chr17:73774518-73774776(-)$1	258	213	237	12.1384
iii!!ccc[aooooooa]ccc22i	chr7:100882786-100883073(-)$1	287	120	144	13.5645
cceeeeecccooooooccc]eeee	chr2:24296846-24297080(-)$1	234	169	193	13.1832
[iiiiiiiiiooooooiiiiiiii	chr19:51601682-51601963(-)$1	281	188	212	13.1688
ddd!!eeeeeooooooeeeee333	chr2:26357728-26357980(+)$1	252	155	179	13.4578
ccc####cccooooooccc4444c	chr14:96998861-96999092(+)$1	231	182	206	14.1605
eeee!!ddddoooooodddd4444	chr17:72205855-72206113(+)$1	258	87	111	12.6771
[bb[ffffffooooooffffff]b	chr17:27186118-27186360(+)$1	242	48	72	11.9074

#otherMatches

#Seq PSSM
AGCAACACAGUCACUCCUGGCGGC	chr3:197680772-197680975(+)$1	203	99	123	12.2801
GUCCCUUUGGUUUGGCCCAGAGGG	chr8:21862488-21862759(+)$1	271	143	167	13.6950
UGUGGGAUCCACUCUAGGAUCUUU	chr4:110384148-110384408(+)$1	260	152	176	13.1294
UAACAUGAAUAAUUUAGUUUUUUG	chr3:33729722-33729961(-)$1	239	48	72	12.4618
GGAGAAUGUUGUACAGAGCGUGAC	chr10:88719286-88719532(+)$1	246	116	140	13.0244
CCUUUCUAGGCAAAAUCCAUGUUU	chr2:43547496-43547766(-)$1	270	78	102	13.3451
CCCCGUACCCCUCAUAGGGUGCCG	chr19:36279072-36279328(+)$1	256	40	64	12.7656
GAAGAACAGGUUUCUCUCUGUCCU	chr17:73131992-73132259(-)$1	267	206	230	11.5155
AAAGUAUAUAGAGAUAUAUGUACA	chr17:57751018-57751233(+)$1	215	87	111	13.0131
GGGAAGCAGAGAUCAUUUUGCCUU	chrX:123019844-123020098(+)$1	254	30	54	12.4182
UACAUAGAGUGCUGUAGCUGUGUG	chr22:39918475-39918734(+)$1	259	163	187	12.4141
UCCAACAGGAUUAUUUUCCCAGGA	chr3:10342629-10342910(-)$1	281	57	81	13.9029
UUUCAGGUGACAAGUUUCGGUUGG	chr3:184082876-184083115(+)$1	239	38	62	12.4572
CAUCUGCCAGCAGCAACUUCAGAU	chr15:56386369-56386660(-)$1	291	201	225	11.6156
GUUUUGUAAAUCCAUUUUGUAGAG	chr5:34908683-34909000(-)$1	317	286	310	11.4027
CUCCUGAUCUGACCCGAGAGAGGA	chr19:36641053-36641334(+)$1	281	212	236	13.2601
CCUUCUACACACAUAAGUAUGGUU	chr17:27076173-27076426(+)$1	253	15	39	11.5891
CAGAAUUGUUAACGUGAAUAUAUC	chr3:186507601-186507897(-)$1	296	128	152	12.0013
AAGAGGCAAGGAUCUACUGUCAUU	chr20:34292248-34292513(-)$1	265	194	218	12.3431
CUCCCCUUGUAGAUAAACUGGGUU	chr5:137710688-137710959(+)$1	271	100	124	12.6052
CAGGGCCCCCUCCCCCGGGAAUGC	chr20:2442240-2442518(-)$1	278	76	100	13.7141
AUGUACAAGCAGUUGGGCUACAGU	chr20:20013149-20013394(+)$1	245	60	84	14.1942
CCUGGGGUGUGUAUAGAUACUUCG	chr7:107626601-107626868(-)$1	267	112	136	11.5866
GGUGCAUGUAAAUUAAUGCUGUAC	chr12:116413216-116413439(-)$1	223	141	165	11.5661
CAUAUAAGUUGGGUAAAACUUAAU	chr8:48701438-48701711(-)$1	273	31	55	12.1102
CUGAGUUACACCAGAAUGUAAAUG	chr16:46710409-46710667(-)$1	258	118	142	11.7852
GGAUGGGGAGGAGUGGCUCCCCCA	chr7:150731271-150731532(+)$1	261	28	52	12.3401
GUUCCAGAAGGCUGAGCUGCACUG	chr19:3980566-3980773(-)$1	207	9	33	8.5195
UGAGACAGCUGAGAAUGGCUGUUA	chr10:75525533-75525775(+)$1	242	182	206	13.0776
GUUACAGCCAUGACAUUGAUCCUG	chr17:26947964-26948240(-)$1	276	136	160	12.7583
GCACCCAGCAACUUUCUGCACAGG	chr16:84163163-84163431(-)$1	268	153	177	13.8271
CCCUCCUCCCUUCCCUGGGUGACU	chr20:31291105-31291365(-)$1	260	218	242	12.7428
UACAAUCUUUUUAAACAGGGAAUG	chr14:97000725-97000964(+)$1	239	84	108	12.7294
CAAAGCUUUAUGGUUCUGAUUCUU	chr11:118886450-118886698(-)$1	248	189	213	13.0381
GUGCAUUCCCUUAUUCGUGGAAGC	chr11:9459263-9459541(+)$1	278	36	60	11.9589
GGUAUGUUAUUUUUAUAUAUUAUA	chr5:170818609-170818837(+)$1	228	193	217	12.9835
GCUGUGGUGAGCAGCGUCAACACU	chr10:88719657-88719873(+)$1	216	141	165	13.0922
UUGCCCAUGCCAAAGAGUAUAUUC	chr5:154346325-154346577(+)$1	252	70	94	12.9636
UCAUGUGCCCUGACAUGUACACAU	chr1:78162854-78163121(-)$1	267	157	181	11.4410
ACACACACCUCUACCCAGGUGUAU	chr17:27185986-27186232(+)$1	246	180	204	11.9074
GAAUUAUUUGCUGUUUGCAUGGUG	chr21:34876337-34876620(-)$1	283	225	249	9.3086
AGAAGCCAGGGAAUCGCCUAGACU	chr11:111955862-111956243(-)$1	381	97	121	14.3870
GUUUGCCCAGAUCAAACUGUGGUG	chr11:47656119-47656354(-)$1	235	157	181	12.8552
uaucauauuguaucaucaaugcug	chrX:100881000-100881311(+)$1	311	217	241	12.8527
AUUCCAUCUUUCACUCAGGAUGAA	chr17:73774518-73774776(-)$1	258	213	237	12.1384
CCUUCAGCCCCAUCAUGUGCUUUG	chr7:100882786-100883073(-)$1	287	120	144	13.5645
GCAUAAUCUGUAAUUUCAGAAUUA	chr2:24296846-24297080(-)$1	234	169	193	13.1832
ACCUGGCCUUCCAUGUGGGGUUGG	chr19:51601682-51601963(-)$1	281	188	212	13.1688
CUGCUGAGCAUUCUCCUGUUCCAU	chr2:26357728-26357980(+)$1	252	155	179	13.4578
AUUUCUAUGACAUUUCUCAGCUUG	chr14:96998861-96999092(+)$1	231	182	206	14.1605
GUUUGGCAGUGAAGGAACUGAAAU	chr17:72205855-72206113(+)$1	258	87	111	12.6771
ACACACACCUCUACCCAGGUGUAU	chr17:27186118-27186360(+)$1	242	48	72	11.9074

#DB
.((..(.(((......))))..))	chr3:197680772-197680975(+)$1	1	99	123	12.2801
((((((((((......))))))))	chr8:21862488-21862759(+)$1	1	143	167	13.6950
((.(((((((......))))))).	chr4:110384148-110384408(+)$1	1	152	176	13.1294
(((((.((((......))))..))	chr3:33729722-33729961(-)$1	1	48	72	12.4618
((...(((((......)))))..)	chr10:88719286-88719532(+)$1	1	116	140	13.0244
((...(..((......))..)...	chr2:43547496-43547766(-)$1	1	78	102	13.3451
(((.((((((......)))))).)	chr19:36279072-36279328(+)$1	1	40	64	12.7656
)(((.(((((......))))).))	chr17:73131992-73132259(-)$1	1	206	230	11.5155
...(((((((......))))))).	chr17:57751018-57751233(+)$1	1	87	111	13.0131
(((..(((((......))))))))	chrX:123019844-123020098(+)$1	1	30	54	12.4182
.(((((.(((......))).))))	chr22:39918475-39918734(+)$1	1	163	187	12.4141
(((..(.(((......)))..)..	chr3:10342629-10342910(-)$1	1	57	81	13.9029
..((((.(((......))).))))	chr3:184082876-184083115(+)$1	1	38	62	12.4572
((((((..((......)).)))))	chr15:56386369-56386660(-)$1	1	201	225	11.6156
(((((.((((......)).)).))	chr5:34908683-34909000(-)$1	1	286	310	11.4027
(((((..(((......))).))))	chr19:36641053-36641334(+)$1	1	212	236	13.2601
(...(((.((......)).)))..	chr17:27076173-27076426(+)$1	1	15	39	11.5891
((((..((((......))))..))	chr3:186507601-186507897(-)$1	1	128	152	12.0013
((..((((.(......))))).))	chr20:34292248-34292513(-)$1	1	194	218	12.3431
(((.(((.((......)).)))..	chr5:137710688-137710959(+)$1	1	100	124	12.6052
))((((((((......)))...).	chr20:2442240-2442518(-)$1	1	76	100	13.7141
((((((((((......)))....)	chr20:20013149-20013394(+)$1	1	60	84	14.1942
)).(((((((......)))))))(	chr7:107626601-107626868(-)$1	1	112	136	11.5866
((((((.(((......))))))))	chr12:116413216-116413439(-)$1	1	141	165	11.5661
((..((((((......))))))..	chr8:48701438-48701711(-)$1	1	31	55	12.1102
)))))(((((......)))))(((	chr16:46710409-46710667(-)$1	1	118	142	11.7852
(...((((((......))))))..	chr7:150731271-150731532(+)$1	1	28	52	12.3401
(((((((..(((...)))...)))	chr19:3980566-3980773(-)$1	1	9	33	8.5195
((((((((((......))))))).	chr10:75525533-75525775(+)$1	1	182	206	13.0776
(((.(((.((......))...)))	chr17:26947964-26948240(-)$1	1	136	160	12.7583
(((((..(((......)))...))	chr16:84163163-84163431(-)$1	1	153	177	13.8271
((((((.(((......))).)...	chr20:31291105-31291365(-)$1	1	218	242	12.7428
((...(((((......))))).))	chr14:97000725-97000964(+)$1	1	84	108	12.7294
.((((..(((......)))..)))	chr11:118886450-118886698(-)$1	1	189	213	13.0381
.(((.(((((......).))))))	chr11:9459263-9459541(+)$1	1	36	60	11.9589
(.((((.(((......))).))))	chr5:170818609-170818837(+)$1	1	193	217	12.9835
)))(((.(((......))).))))	chr10:88719657-88719873(+)$1	1	141	165	13.0922
(((...((((......))))...)	chr5:154346325-154346577(+)$1	1	70	94	12.9636
(((((((..(......)..)))))	chr1:78162854-78163121(-)$1	1	157	181	11.4410
.((.((((((......)))))).)	chr17:27185986-27186232(+)$1	1	180	204	11.9074
(((((((((((.....))).))))	chr21:34876337-34876620(-)$1	1	225	249	9.3086
(((..(.(((......))).)..)	chr11:111955862-111956243(-)$1	1	97	121	14.3870
((.(((((((......))).))))	chr11:47656119-47656354(-)$1	1	157	181	12.8552
((((((((((......))))).))	chrX:100881000-100881311(+)$1	1	217	241	12.8527
((((.(((((......))))))))	chr17:73774518-73774776(-)$1	1	213	237	12.1384
(((..(((.(......).)))..)	chr7:100882786-100883073(-)$1	1	120	144	13.5645
((((((((((......))).))))	chr2:24296846-24297080(-)$1	1	169	193	13.1832
.(((((((((......))))))))	chr19:51601682-51601963(-)$1	1	188	212	13.1688
(((..(((((......)))))...	chr2:26357728-26357980(+)$1	1	155	179	13.4578
(((....(((......)))....)	chr14:96998861-96999092(+)$1	1	182	206	14.1605
((((..((((......))))....	chr17:72205855-72206113(+)$1	1	87	111	12.6771
.((.((((((......)))))).)	chr17:27186118-27186360(+)$1	1	48	72	11.9074

#PSSM
d : 0.19	e : 0.17	c : 0.11	f : 0.09	g : 0.07	= : 0.05	[ : 0.05	: : 0.03	b : 0.03	i : 0.03	I : 0.01	# : 0.01	$ : 0.01	h : 0.01	! : 0.01	" : 0.01	
e : 0.17	c : 0.15	d : 0.15	f : 0.11	b : 0.09	g : 0.07	= : 0.05	i : 0.05	" : 0.03	# : 0.01	$ : 0.01	h : 0.01	[ : 0.01	
d : 0.17	e : 0.15	f : 0.11	" : 0.09	g : 0.07	c : 0.07	b : 0.05	= : 0.05	i : 0.05	[ : 0.03	! : 0.03	# : 0.01	: : 0.01	h : 0.01	
! : 0.15	g : 0.15	" : 0.11	d : 0.11	[ : 0.09	e : 0.09	c : 0.07	f : 0.07	= : 0.03	i : 0.03	h : 0.01	# : 0.01	
f : 0.17	! : 0.15	g : 0.15	d : 0.11	c : 0.09	" : 0.07	[ : 0.05	e : 0.05	= : 0.03	i : 0.03	h : 0.01	# : 0.01	
e : 0.19	f : 0.13	g : 0.11	d : 0.11	a : 0.09	! : 0.09	c : 0.09	= : 0.03	[ : 0.03	h : 0.01	" : 0.01	i : 0.01	# : 0.01	
[ : 0.17	e : 0.17	d : 0.13	g : 0.11	f : 0.11	! : 0.09	c : 0.07	= : 0.03	b : 0.01	a : 0.01	i : 0.01	# : 0.01	
c : 0.34	e : 0.15	d : 0.11	f : 0.09	g : 0.07	! : 0.07	[ : 0.05	= : 0.03	b : 0.01	i : 0.01	
c : 0.34	e : 0.15	b : 0.11	d : 0.09	f : 0.09	g : 0.07	[ : 0.03	! : 0.03	= : 0.01	i : 0.01	
c : 0.36	e : 0.15	b : 0.11	f : 0.09	g : 0.07	d : 0.07	a : 0.07	= : 0.01	i : 0.01	
o : 0.96	c : 0.03	
o : 0.96	c : 0.01	n : 0.01	
o : 0.96	l : 0.01	n : 0.01	
o : 0.96	l : 0.01	n : 0.01	
o : 0.96	l : 0.01	n : 0.01	
o : 0.96	c : 0.01	n : 0.01	
c : 0.36	e : 0.15	b : 0.11	f : 0.09	g : 0.07	d : 0.07	a : 0.07	= : 0.01	i : 0.01	
c : 0.36	e : 0.15	b : 0.11	d : 0.09	f : 0.09	g : 0.07	] : 0.03	= : 0.01	2 : 0.01	i : 0.01	
c : 0.36	e : 0.15	d : 0.11	f : 0.09	g : 0.07	] : 0.07	2 : 0.03	3 : 0.03	= : 0.01	i : 0.01	
] : 0.19	e : 0.15	f : 0.13	d : 0.11	g : 0.07	3 : 0.07	2 : 0.05	c : 0.05	4 : 0.03	a : 0.01	= : 0.01	b : 0.01	h : 0.01	i : 0.01	
e : 0.19	f : 0.15	2 : 0.09	d : 0.09	3 : 0.09	g : 0.07	c : 0.07	a : 0.05	4 : 0.05	= : 0.03	b : 0.01	h : 0.01	i : 0.01	
f : 0.17	2 : 0.11	d : 0.11	g : 0.09	3 : 0.09	] : 0.09	c : 0.07	e : 0.05	4 : 0.05	= : 0.03	a : 0.01	h : 0.01	8 : 0.01	i : 0.01	
g : 0.13	d : 0.13	2 : 0.11	f : 0.09	3 : 0.07	c : 0.07	e : 0.07	] : 0.05	4 : 0.05	= : 0.03	i : 0.03	b : 0.01	6 : 0.01	a : 0.01	h : 0.01	8 : 0.01	
d : 0.19	c : 0.09	f : 0.09	2 : 0.07	g : 0.07	e : 0.07	b : 0.05	= : 0.05	3 : 0.05	] : 0.05	i : 0.05	6 : 0.01	h : 0.01	8 : 0.01	G : 0.01	4 : 0.01	

#score	653.2387694855295
#seq	52
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_transcript_m3_run1.txt

#BEAR
eeeeooooooeeeee	chr16:30735383-30735640(+)$1	257	111	126	10.5784
e!!aooooooa22ee	chr3:65907439-65907721(-)$1	282	224	239	9.5751
eeeeooooooeeeee	chr18:13445737-13446006(+)$1	269	7	22	10.5784
eeeeooooooeeeee	chr19:48887542-48887789(-)$1	247	65	80	10.5784
ddddoooooodddd:	chr11:68189198-68189460(+)$1	262	72	87	10.3054
[cccooooooccc]c	chr21:16335648-16335875(-)$1	227	150	165	10.6111
ddddoooooodddd:	chr16:72827895-72828157(-)$1	262	186	201	10.3054
fffaooooooa]fff	chr16:74481897-74482146(-)$1	249	216	231	9.9507
#cccooooooccc22	chr4:187541524-187541775(-)$1	251	69	84	9.9769
[cccooooooccc]c	chr11:65211622-65211868(+)$1	246	21	36	10.6111
ee[aooooooa]eee	chr19:6718048-6718275(-)$1	227	190	205	10.3630
====oooooo=====	chr16:81578303-81578581(+)$1	278	30	45	10.3641
ggggooooooggggg	chr19:11031409-11031663(+)$1	254	28	43	10.3752
ggggooooooggggg	chr16:67470928-67471213(+)$1	285	256	271	10.3752
ddddoooooodddd]	chr2:30863760-30864081(+)$1	321	247	262	11.1644
ffffoooooofffff	chr21:27252980-27253206(-)$1	226	17	32	9.9110
====oooooo=====	chr1:9789298-9789530(-)$1	232	96	111	10.3641
ffbboooooobb333	chrX:41091554-41091854(+)$1	300	255	270	8.9118
ddddooooooddddg	chr1:43392077-43392326(-)$1	249	95	110	11.0822
ddddoooooodddd:	chr5:32415072-32415390(-)$1	318	122	137	10.3054
ffffoooooofffff	chr3:129274190-129274436(-)$1	246	111	126	9.9110
[cccooooooccc]b	chr16:88586468-88586731(+)$1	263	105	120	10.3806
ddddoooooodddd]	chr17:79963669-79963895(+)$1	226	22	37	11.1644
ddddoooooodddd]	chr1:93618394-93618651(-)$1	257	57	72	11.1644
ddddooooooddddc	chr17:65105468-65105795(-)$1	327	0	15	11.0832
ddddoooooodddd:	chr19:43012366-43012618(-)$1	252	7	22	10.3054
====oooooo=====	chr13:28713561-28713847(+)$1	286	206	221	10.3641
eeeeooooooeeeee	chr16:81712529-81712782(+)$1	253	71	86	10.5784
ffffoooooofffff	chr2:220089186-220089428(-)$1	242	76	91	9.9110
ffffoooooofffff	chr3:129113596-129113840(-)$1	244	221	236	9.9110
ddddoooooodddd:	chr19:1088412-1088662(-)$1	250	117	132	10.3054
ddddooooooddddh	chr16:89370509-89370809(-)$1	300	141	156	10.8384
!cccooooooccc22	chr6:89793413-89793730(+)$1	317	195	210	10.1376
ddddoooooodddd:	chr1:109642783-109642989(+)$1	206	112	127	10.3054
eeeeooooooeeeee	chr7:103205777-103206034(-)$1	257	110	125	10.5784
eeeeooooooeeeee	chr13:99105158-99105454(-)$1	296	137	152	10.5784
ddddooooooddddh	chr17:79963151-79963410(+)$1	259	179	194	10.8384
eeeeooooooeeeee	chr7:94295800-94296084(+)$1	284	36	51	10.5784
ddddooooooddddd	chr19:41810007-41810267(+)$1	260	104	119	10.9468
eeeeooooooeeeee	chr11:61537834-61538095(+)$1	261	25	40	10.5784
ggggooooooggggg	chr9:136718741-136718997(-)$1	256	202	217	10.3752
dd[aooooooa]ddd	chr2:20193200-20193483(-)$1	283	191	206	10.4738
ddddooooooddddD	chr20:62653207-62653496(+)$1	289	126	141	10.0419
ddddoooooodddd]	chr19:15350620-15350883(-)$1	263	207	222	11.1644
ffffoooooofffff	chrX:132784336-132784628(-)$1	292	199	214	9.9110
ddddoooooodddd]	chr1:161141336-161141636(-)$1	300	211	226	11.1644
dd[aooooooa]ddd	chr2:11323145-11323425(-)$1	280	149	164	10.4738
ddddoooooodddd:	chr1:109642821-109643024(+)$1	203	74	89	10.3054
ddddooooooddddd	chr16:87864681-87864928(-)$1	247	78	93	10.9468
ffffoooooofffff	chr3:57995746-57996016(+)$1	270	55	70	9.9110
ffffoooooofffff	chr2:61710980-61711276(-)$1	296	4	19	9.9110
"cccooooooccchh	chr18:19446385-19446675(+)$1	290	247	262	10.0212
ffffoooooofffff	chr20:31437480-31437741(+)$1	261	86	101	9.9110
ggggooooooggggg	chr22:38062569-38062838(+)$1	269	185	200	10.3752
[cccooooooccccc	chr20:334538-334827(+)$1	289	77	92	10.5664
:cccooooooccccc	chr1:21377258-21377508(-)$1	250	31	46	9.4389
ffffoooooofffff	chr2:136479393-136479656(+)$1	263	43	58	9.9110
ddddoooooodddd:	chr2:61416052-61416305(-)$1	253	27	42	10.3054
ggggooooooggggg	chr1:167358723-167359054(+)$1	331	278	293	10.3752
ggggooooooggggg	chr19:41812270-41812556(+)$1	286	225	240	10.3752
eeeeooooooeeeee	chr5:78076127-78076387(-)$1	260	100	115	10.5784
ddddoooooodddd:	chr17:7078632-7078908(-)$1	276	179	194	10.3054
ffffoooooofffff	chr11:34112039-34112305(+)$1	266	195	210	9.9110
ccccooooooccc]c	chr1:245026388-245026647(-)$1	259	37	52	10.5355
[cccooooooccc]c	chr1:169510106-169510331(-)$1	225	170	185	10.6111
eeeeooooooeeeee	chr17:37008781-37009017(-)$1	236	17	32	10.5784
ddddoooooodddd4	chr4:129192252-129192564(-)$1	312	125	140	11.0076

#otherMatches

#Seq PSSM
GCCACCCCUCUGGCU	chr16:30735383-30735640(+)$1	257	111	126	10.5784
gcuaacuuucuUUCC	chr3:65907439-65907721(-)$1	282	224	239	9.5751
ugugggugugugcau	chr18:13445737-13446006(+)$1	269	7	22	10.5784
UCCAUCUACCUGGAG	chr19:48887542-48887789(-)$1	247	65	80	10.5784
gugugugugugcgcg	chr11:68189198-68189460(+)$1	262	72	87	10.3054
UCAGGAAAAUCUGUG	chr21:16335648-16335875(-)$1	227	150	165	10.6111
ACCCAACGAAGGGUU	chr16:72827895-72828157(-)$1	262	186	201	10.3054
AUCCUGACCCGUGGU	chr16:74481897-74482146(-)$1	249	216	231	9.9507
UUGUUUUAUCACAUC	chr4:187541524-187541775(-)$1	251	69	84	9.9769
GCAAAGGCAGUUGGC	chr11:65211622-65211868(+)$1	246	21	36	10.6111
CCAGGGGAAGCAGGG	chr19:6718048-6718275(-)$1	227	190	205	10.3630
gcaugugugugugug	chr16:81578303-81578581(+)$1	278	30	45	10.3641
CUUGCCUGCACAGGG	chr19:11031409-11031663(+)$1	254	28	43	10.3752
GUCUCAUGCAAGACU	chr16:67470928-67471213(+)$1	285	256	271	10.3752
GUCGUGAAACCGAUC	chr2:30863760-30864081(+)$1	321	247	262	11.1644
GAUUGUACAGAAUCA	chr21:27252980-27253206(-)$1	226	17	32	9.9110
UGCUUUGCUUGGUGG	chr1:9789298-9789530(-)$1	232	96	111	10.3641
GUGCACCCAGGCCUU	chrX:41091554-41091854(+)$1	300	255	270	8.9118
CCCCACUCUAGGGGU	chr1:43392077-43392326(-)$1	249	95	110	11.0822
GUGCAACUCAGUAUA	chr5:32415072-32415390(-)$1	318	122	137	10.3054
ACCCGGGGAGGGGUC	chr3:129274190-129274436(-)$1	246	111	126	9.9110
gcauggguagauggg	chr16:88586468-88586731(+)$1	263	105	120	10.3806
GGAGGCACAGCUCCA	chr17:79963669-79963895(+)$1	226	22	37	11.1644
GUGAUUUCAUUUACA	chr1:93618394-93618651(-)$1	257	57	72	11.1644
UGGAAUCAAAUCCAC	chr17:65105468-65105795(-)$1	327	0	15	11.0832
CUAGAAGCAACUAGG	chr19:43012366-43012618(-)$1	252	7	22	10.3054
GGGAGAAAGGUUUUG	chr13:28713561-28713847(+)$1	286	206	221	10.3641
ACAUGAGUUUGUGUG	chr16:81712529-81712782(+)$1	253	71	86	10.5784
CAAGUACAACUUUGA	chr2:220089186-220089428(-)$1	242	76	91	9.9110
CUGUGUGUGUGCAGG	chr3:129113596-129113840(-)$1	244	221	236	9.9110
CCAUUCACCUGUGGA	chr19:1088412-1088662(-)$1	250	117	132	10.3054
CAUGUGUGUUCAUGU	chr16:89370509-89370809(-)$1	300	141	156	10.8384
CUCUGCAAAAAGAAA	chr6:89793413-89793730(+)$1	317	195	210	10.1376
GUGUGAGUGGACGCG	chr1:109642783-109642989(+)$1	206	112	127	10.3054
GGCUGUAGCAAGCCC	chr7:103205777-103206034(-)$1	257	110	125	10.5784
UGGGAGCCACCCCAG	chr13:99105158-99105454(-)$1	296	137	152	10.5784
GGCUCCUCCUGGCUC	chr17:79963151-79963410(+)$1	259	179	194	10.8384
CCAGAGAUUACUGGU	chr7:94295800-94296084(+)$1	284	36	51	10.5784
UGGCUCAAGCGCCAA	chr19:41810007-41810267(+)$1	260	104	119	10.9468
GCAGCGGGAUCUGUA	chr11:61537834-61538095(+)$1	261	25	40	10.5784
UAGUGACAGAGCUGG	chr9:136718741-136718997(-)$1	256	202	217	10.3752
aaggugcauuuguua	chr2:20193200-20193483(-)$1	283	191	206	10.4738
CACAGCCCugugugu	chr20:62653207-62653496(+)$1	289	126	141	10.0419
GGUGCCUGCCCACCU	chr19:15350620-15350883(-)$1	263	207	222	11.1644
CUGCCCUGAAGUAGA	chrX:132784336-132784628(-)$1	292	199	214	9.9110
CCCUCUCUCUAGGGU	chr1:161141336-161141636(-)$1	300	211	226	11.1644
AUGCACACAAGGAUU	chr2:11323145-11323425(-)$1	280	149	164	10.4738
GUGUGAGUGGACGCG	chr1:109642821-109643024(+)$1	203	74	89	10.3054
AGGACCUGCAUCCUU	chr16:87864681-87864928(-)$1	247	78	93	10.9468
UGUAUCCACCUACAC	chr3:57995746-57996016(+)$1	270	55	70	9.9110
AACAUUAUUUUGUUU	chr2:61710980-61711276(-)$1	296	4	19	9.9110
GAGCUGCAGUGCUAA	chr18:19446385-19446675(+)$1	290	247	262	10.0212
GGUCAGUGAAGGCCA	chr20:31437480-31437741(+)$1	261	86	101	9.9110
GGGCUUUCGUGUCCC	chr22:38062569-38062838(+)$1	269	185	200	10.3752
ucucugccaugaggg	chr20:334538-334827(+)$1	289	77	92	10.5664
UGGCAAGACAGCCGG	chr1:21377258-21377508(-)$1	250	31	46	9.4389
caugaaccaccgugc	chr2:136479393-136479656(+)$1	263	43	58	9.9110
UGCAAUUAACUGUAA	chr2:61416052-61416305(-)$1	253	27	42	10.3054
GGGUGAAUUGGCCUU	chr1:167358723-167359054(+)$1	331	278	293	10.3752
GGCCCCUGCCGGCUU	chr19:41812270-41812556(+)$1	286	225	240	10.3752
UGUACUUCCCUGCAC	chr5:78076127-78076387(-)$1	260	100	115	10.5784
gccugugugagggug	chr17:7078632-7078908(-)$1	276	179	194	10.3054
UUAACUAACAUUAAU	chr11:34112039-34112305(+)$1	266	195	210	9.9110
cgggagggagcccgg	chr1:245026388-245026647(-)$1	259	37	52	10.5355
UGAGAUGCCCCUCUU	chr1:169510106-169510331(-)$1	225	170	185	10.6111
UACAUUCUUUUGUAG	chr17:37008781-37009017(-)$1	236	17	32	10.5784
AGAACUGCAAUUCUU	chr4:129192252-129192564(-)$1	312	125	140	11.0076

#DB
((((......)))))	chr16:30735383-30735640(+)$1	1	111	126	10.5784
(..(......)..))	chr3:65907439-65907721(-)$1	1	224	239	9.5751
((((......)))))	chr18:13445737-13446006(+)$1	1	7	22	10.5784
((((......)))))	chr19:48887542-48887789(-)$1	1	65	80	10.5784
((((......)))).	chr11:68189198-68189460(+)$1	1	72	87	10.3054
.(((......))).)	chr21:16335648-16335875(-)$1	1	150	165	10.6111
((((......)))).	chr16:72827895-72828157(-)$1	1	186	201	10.3054
((((......).)))	chr16:74481897-74482146(-)$1	1	216	231	9.9507
.(((......)))..	chr4:187541524-187541775(-)$1	1	69	84	9.9769
.(((......))).)	chr11:65211622-65211868(+)$1	1	21	36	10.6111
((.(......).)))	chr19:6718048-6718275(-)$1	1	190	205	10.3630
((((......)))))	chr16:81578303-81578581(+)$1	1	30	45	10.3641
((((......)))))	chr19:11031409-11031663(+)$1	1	28	43	10.3752
((((......)))))	chr16:67470928-67471213(+)$1	1	256	271	10.3752
((((......)))).	chr2:30863760-30864081(+)$1	1	247	262	11.1644
((((......)))))	chr21:27252980-27253206(-)$1	1	17	32	9.9110
((((......)))))	chr1:9789298-9789530(-)$1	1	96	111	10.3641
((((......))...	chrX:41091554-41091854(+)$1	1	255	270	8.9118
((((......)))))	chr1:43392077-43392326(-)$1	1	95	110	11.0822
((((......)))).	chr5:32415072-32415390(-)$1	1	122	137	10.3054
((((......)))))	chr3:129274190-129274436(-)$1	1	111	126	9.9110
.(((......))).)	chr16:88586468-88586731(+)$1	1	105	120	10.3806
((((......)))).	chr17:79963669-79963895(+)$1	1	22	37	11.1644
((((......)))).	chr1:93618394-93618651(-)$1	1	57	72	11.1644
((((......))))(	chr17:65105468-65105795(-)$1	1	0	15	11.0832
((((......)))).	chr19:43012366-43012618(-)$1	1	7	22	10.3054
((((......)))))	chr13:28713561-28713847(+)$1	1	206	221	10.3641
((((......)))))	chr16:81712529-81712782(+)$1	1	71	86	10.5784
((((......)))))	chr2:220089186-220089428(-)$1	1	76	91	9.9110
((((......)))))	chr3:129113596-129113840(-)$1	1	221	236	9.9110
((((......)))).	chr19:1088412-1088662(-)$1	1	117	132	10.3054
((((......)))))	chr16:89370509-89370809(-)$1	1	141	156	10.8384
.(((......)))..	chr6:89793413-89793730(+)$1	1	195	210	10.1376
((((......)))).	chr1:109642783-109642989(+)$1	1	112	127	10.3054
((((......)))))	chr7:103205777-103206034(-)$1	1	110	125	10.5784
((((......)))))	chr13:99105158-99105454(-)$1	1	137	152	10.5784
((((......))))(	chr17:79963151-79963410(+)$1	1	179	194	10.8384
((((......)))))	chr7:94295800-94296084(+)$1	1	36	51	10.5784
((((......))))(	chr19:41810007-41810267(+)$1	1	104	119	10.9468
((((......)))))	chr11:61537834-61538095(+)$1	1	25	40	10.5784
((((......)))))	chr9:136718741-136718997(-)$1	1	202	217	10.3752
((.(......).)))	chr2:20193200-20193483(-)$1	1	191	206	10.4738
((((......)))))	chr20:62653207-62653496(+)$1	1	126	141	10.0419
((((......)))).	chr19:15350620-15350883(-)$1	1	207	222	11.1644
((((......)))))	chrX:132784336-132784628(-)$1	1	199	214	9.9110
((((......)))).	chr1:161141336-161141636(-)$1	1	211	226	11.1644
((.(......).)))	chr2:11323145-11323425(-)$1	1	149	164	10.4738
((((......)))).	chr1:109642821-109643024(+)$1	1	74	89	10.3054
((((......))))(	chr16:87864681-87864928(-)$1	1	78	93	10.9468
((((......)))))	chr3:57995746-57996016(+)$1	1	55	70	9.9110
((((......)))))	chr2:61710980-61711276(-)$1	1	4	19	9.9110
.(((......)))))	chr18:19446385-19446675(+)$1	1	247	262	10.0212
((((......)))))	chr20:31437480-31437741(+)$1	1	86	101	9.9110
((((......)))))	chr22:38062569-38062838(+)$1	1	185	200	10.3752
.(((......)))))	chr20:334538-334827(+)$1	1	77	92	10.5664
.(((......)))((	chr1:21377258-21377508(-)$1	1	31	46	9.4389
((((......)))))	chr2:136479393-136479656(+)$1	1	43	58	9.9110
((((......)))).	chr2:61416052-61416305(-)$1	1	27	42	10.3054
((((......)))))	chr1:167358723-167359054(+)$1	1	278	293	10.3752
((((......)))))	chr19:41812270-41812556(+)$1	1	225	240	10.3752
((((......)))))	chr5:78076127-78076387(-)$1	1	100	115	10.5784
((((......)))).	chr17:7078632-7078908(-)$1	1	179	194	10.3054
((((......)))))	chr11:34112039-34112305(+)$1	1	195	210	9.9110
((((......))).)	chr1:245026388-245026647(-)$1	1	37	52	10.5355
.(((......))).)	chr1:169510106-169510331(-)$1	1	170	185	10.6111
((((......)))))	chr17:37008781-37009017(-)$1	1	17	32	10.5784
((((......)))).	chr4:129192252-129192564(-)$1	1	125	140	11.0076

#PSSM
d : 0.35	e : 0.17	f : 0.17	g : 0.08	[ : 0.07	= : 0.04	# : 0.01	! : 0.01	" : 0.01	: : 0.01	c : 0.01	
d : 0.35	f : 0.17	e : 0.16	c : 0.14	g : 0.08	= : 0.04	! : 0.01	
d : 0.32	f : 0.16	e : 0.14	c : 0.14	g : 0.08	[ : 0.04	= : 0.04	! : 0.01	b : 0.01	
d : 0.32	e : 0.14	c : 0.14	f : 0.14	g : 0.08	a : 0.07	= : 0.04	b : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.32	e : 0.14	c : 0.14	f : 0.14	g : 0.08	a : 0.07	= : 0.04	b : 0.01	
d : 0.32	e : 0.14	c : 0.14	f : 0.14	g : 0.08	] : 0.05	= : 0.04	2 : 0.01	b : 0.01	
d : 0.35	e : 0.16	f : 0.16	c : 0.14	g : 0.08	= : 0.04	2 : 0.01	3 : 0.01	
d : 0.35	e : 0.17	f : 0.16	g : 0.08	] : 0.07	= : 0.04	2 : 0.02	c : 0.02	3 : 0.01	h : 0.01	
e : 0.17	f : 0.16	: : 0.13	c : 0.10	g : 0.10	] : 0.07	d : 0.05	= : 0.04	h : 0.04	2 : 0.02	3 : 0.01	b : 0.01	D : 0.01	4 : 0.01	

#score	696.2350861548408
#seq	67
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_UTR_m3_run1.txt

#BEAR
iiii$$$$$ddddmmmmdddd22iiiii	chr5:137684690-137684951(+)$1	261	186	214	14.3779
hhhhhh"""ddddllldddd333hhhhh	chr12:58175246-58175497(+)$1	251	158	186	13.3409
gggggg"""ddddlllddddggggggg]	chr2:231743658-231743959(+)$1	301	166	194	14.2074
[a[ccc!!ddddmmmmdddd22ccc]a]	chr11:45903869-45904120(+)$1	251	3	31	12.5372
fffff"""eeeeemmmmeeeee333fff	chr9:139007991-139008240(-)$1	249	133	161	10.1710
:eeeee"""ddddmmmmdddd4444eee	chr19:10596722-10597016(-)$1	294	79	107	14.3392
iiiiiiiiiddddmmmmddddeeeeeqq	chr22:38881367-38881587(-)$1	220	119	147	11.4675
eeeee[ccc[ddddllldddd]ccc333	chr7:44747974-44748269(+)$1	295	23	51	12.7397
ff[ccc"""ddddmmmmdddd333ccc]	chrX:103438329-103438570(+)$1	241	49	77	16.0236
ccc[dddd[ddddmmmmdddd22dddd]	chr19:39889018-39889253(+)$1	235	44	72	13.4772
ggggg[bb!!ddddllldddd22bb]gg	chr6:18129972-18130230(-)$1	258	79	107	12.9318
gggggg[a[ddddlllddddaggggggg	chr16:417308-417549(-)$1	241	107	135	13.4838
eeeeccc[ddddnnnnndddd]ccc22e	chr1:151555887-151556126(+)$1	239	3	31	12.2623
ffffff"""ddddoooooodddd22fff	chr4:1809646-1809896(+)$1	250	32	60	11.4038
""ccc[ccc[ddddllldddd]ccc22c	chr22:29951464-29951690(-)$1	226	97	125	12.3011
ggggggg!!ddddmmmmddddggggggg	chr1:201452627-201452930(-)$1	303	244	272	14.4998
ee!!ccc!!ddddmmmmdddd4444ccc	chr19:42751644-42751924(-)$1	280	24	52	14.9433
d[ccc[ccc[cccmmmmccc4444ccc]	chr20:3847768-3848006(+)$1	238	23	51	10.0647
fff!!a[a[ddddnnnnnddddaa]fff	chr12:49330978-49331234(-)$1	256	86	114	11.9176
!dddd####ddddnnnnndddd333ddd	chr17:62117351-62117610(-)$1	259	46	74	12.6646
gggccc"""ddddmmmmdddd]ccc]gg	chr19:3544402-3544649(-)$1	247	164	192	15.4757
!eeeee"""ddddmmmmdddd333eeee	chr8:144103587-144103902(+)$1	315	26	54	15.8625
e[ggggggg[cccmmmmccc22gggggg	chr19:5206248-5206510(-)$1	262	76	104	10.1002
ffffff"""ddddmmmmdddd4444fff	chr1:43310034-43310334(+)$1	300	188	216	14.8075
ggg[bb!!ddddnnnnndddd333bb22	chr17:18147813-18148070(+)$1	257	41	69	12.5279
d[gggggggddddllldddd333ggggg	chr9:136229810-136230047(-)$1	237	107	135	13.8830
eeeee!!ddddoooooodddd22eeeee	chr2:85548337-85548581(-)$1	244	172	200	12.0737
ddeeeee!!ddddllldddd22eeeee2	chr1:87572460-87572682(+)$1	222	161	189	12.9294
::gggggggddddmmmmdddd]gggggg	chr5:10680512-10680756(-)$1	244	92	120	11.8914
Gccc[ccc[ddddnnnnnddddccc]cc	chr10:81114835-81115088(+)$1	253	198	226	11.4721
dddd$$$$$ddddmmmmdddddddd22e	chr9:130870977-130871237(+)$1	260	8	36	12.0030
ffffff!!ddddnnnnndddd22fffff	chr4:103717748-103717975(-)$1	227	8	36	12.5749
cc"""bb[ddddnnnnndddd]bb333c	chr17:61669149-61669360(+)$1	211	24	52	11.0888
c[dddd"""ddddnnnnndddddddd]c	chr6:42046975-42047193(+)$1	218	35	63	12.2059
:eeeee"""ddddmmmmdddd22eeeee	chr22:39127422-39127685(+)$1	263	231	259	14.4069
b[a[ccc!!ddddmmmmdddd22ccca]	chr10:99520165-99520438(+)$1	273	232	260	15.0733
ggggggg!!ddddllldddd]ggggggg	chr9:136208714-136208940(-)$1	226	149	177	13.7119
eeeee!!ddddoooooodddd22eeeee	chr2:87004378-87004720(+)$1	342	78	106	12.0737
####ccc!!ddddmmmmdddd]ccc333	chr15:65440608-65440885(-)$1	277	49	77	14.6142
ff!!ccc!!ddddmmmmdddd4444ccc	chr3:195778200-195778459(-)$1	259	92	120	14.9008
!!eeeee!!ddddllldddd333eeeee	chr21:47609118-47609371(-)$1	253	177	205	14.3772
cc[dddd[ddddnnnnndddd]ddddcc	chr9:139253514-139253798(+)$1	284	134	162	11.4296
baeeeee!!ddddmmmmdddd22eeeee	chr1:247462791-247463033(-)$1	242	112	140	14.4103
eeeeeccc[ddddmmmmddddccc]eee	chr1:156712414-156712648(-)$1	234	184	212	13.3316
!!dddd####ddddllldddd333dddd	chr20:3913571-3913814(-)$1	243	206	234	13.7909
ccggggggg[ddddllldddd]gggggg	chr9:134372044-134372318(+)$1	274	200	228	12.7572
bb[dddd!!ddddllldddd22dddd]b	chr19:34287641-34287915(+)$1	274	208	236	12.1415
gggggg"""ddddmmmmdddd]gggggg	chr9:136210435-136210676(-)$1	241	101	129	15.4515
!!cccccc[ddddnnnnnddddccc]cc	chr11:118473172-118473455(+)$1	283	223	251	12.1747
d[ffffff[ddddmmmmdddd22fffff	chr22:21305514-21305759(+)$1	245	146	174	13.3526
eeeeee[a[ddddlllddddaeeeee22	chrX:38664725-38664975(+)$1	250	17	45	12.3961
ggggggddddddddllldddd333dddd	chr1:156712448-156712664(-)$1	216	147	175	13.2218

#otherMatches

#Seq PSSM
ACAGUAGAUCUGUUCCAACAGUUCUGUG	chr5:137684690-137684951(+)$1	261	186	214	14.3779
AAGAAUACUGUACCUAGUACUAAGUUCU	chr12:58175246-58175497(+)$1	251	158	186	13.3409
AGCCCUGAGCCUUGGAGAGGAGGGCUGU	chr2:231743658-231743959(+)$1	301	166	194	14.2074
UCCUGUUUGGAUUUUUGUCCUCACGUGU	chr11:45903869-45904120(+)$1	251	3	31	12.5372
GGCAGCGCCCACCUGCCGGUGGCUCCUG	chr9:139007991-139008240(-)$1	249	133	161	10.1710
AAUGUGGUUCCCAGGGAUGGGCCUGUAC	chr19:10596722-10597016(-)$1	294	79	107	14.3392
AAAACAAAGAGGGAUUGCCCUGCACAUU	chr22:38881367-38881587(-)$1	220	119	147	11.4675
CUAGGAUAGCUUCAUCUUGAGCCUGAGC	chr7:44747974-44748269(+)$1	295	23	51	12.7397
AGAAGUAAAUUUAAUUCUGAAAGGACUG	chrX:103438329-103438570(+)$1	241	49	77	16.0236
CACCCAAGCCUGCGUCAGCGGAACUUGA	chr19:39889018-39889253(+)$1	235	44	72	13.4772
AAGAUUAGUUUUUACUAUAAACCCUUGU	chr6:18129972-18130230(-)$1	258	79	107	12.9318
GUUCCUUGUGCCCGUGGGGCCGGGAGCG	chr16:417308-417549(-)$1	241	107	135	13.4838
UUCUGGCUUUGUCCAUAACAAUGcucug	chr1:151555887-151556126(+)$1	239	3	31	12.2623
GCCUGCGACCCUGGGGGCACAGGAGGCA	chr4:1809646-1809896(+)$1	250	32	60	11.4038
AUCCUCUGUUUAGCUUAGUUGCACAAAA	chr22:29951464-29951690(-)$1	226	97	125	12.3011
UCUGGUCAAUAAAGCUGUUUAGACCAGA	chr1:201452627-201452930(-)$1	303	244	272	14.4998
GGGAUGGGAAGGGGGUGCCCUGAAACCA	chr19:42751644-42751924(-)$1	280	24	52	14.9433
caagggugcagcucugcagcacaggcag	chr20:3847768-3848006(+)$1	238	23	51	10.0647
CUCCUGUGUGUGCUGGCUGCGCCCUGAG	chr12:49330978-49331234(-)$1	256	86	114	11.9176
UUCUCUCUCUGCUCUUUUAGUGUCUGAG	chr17:62117351-62117610(-)$1	259	46	74	12.6646
UAAUCCAUCCCAGCCCUCUGGAGGAUUU	chr19:3544402-3544649(-)$1	247	164	192	15.4757
GGAGGUGUGCCAGCAGCCUGGAGAGCCU	chr8:144103587-144103902(+)$1	315	26	54	15.8625
UCGUCCUCCCCCAGCGGUGGUAGGGGGA	chr19:5206248-5206510(-)$1	262	76	104	10.1002
gucagcaagauggagucccaugagagcu	chr1:43310034-43310334(+)$1	300	188	216	14.8075
ccCUGCAAAGAGUAUUUUUCUAGCGCCU	chr17:18147813-18148070(+)$1	257	41	69	12.5279
UAUUUUGGGUGGUUCAGCCAAACCUCAA	chr9:136229810-136230047(-)$1	237	107	135	13.8830
GAAGGUAAGGAAUGAACUCCUACCCUUC	chr2:85548337-85548581(-)$1	244	172	200	12.0737
gccagagaguaaauauuuuaggcuuugc	chr1:87572460-87572682(+)$1	222	161	189	12.9294
AAAUUUCCCUCUCUCGUGAGAUGGGGGA	chr5:10680512-10680756(-)$1	244	92	120	11.8914
caugcuuccuguacauccugcagaacca	chr10:81114835-81115088(+)$1	253	198	226	11.4721
CCAGAGAAAUUCCUUUUGGGACUGGAGG	chr9:130870977-130871237(+)$1	260	8	36	12.0030
UUGGAAGUCAAACACCCUUUGUAUUCCA	chr4:103717748-103717975(-)$1	227	8	36	12.5749
CACUAGGACUUUAGCAGGAAGCCCACAU	chr17:61669149-61669360(+)$1	211	24	52	11.0888
UGAGGCGUUCUGCAAGAAGCAGGUCUGA	chr6:42046975-42047193(+)$1	218	35	63	12.2059
UCAGGAUCAUGUUUUGUAGCACCUCCUG	chr22:39127422-39127685(+)$1	263	231	259	14.4069
GGGAGGCAAGGGACCCAUCCUAGGCCCG	chr10:99520165-99520438(+)$1	273	232	260	15.0733
AGCUGUUGGUGGUUGGGCCAGGGCGGCU	chr9:136208714-136208940(-)$1	226	149	177	13.7119
UGCCUGAUCUUUUUUUUGGGAAGGGGCG	chr2:87004378-87004720(+)$1	342	78	106	12.0737
GUUCAAGUUCUUCCCAGGAAGUCUUACA	chr15:65440608-65440885(-)$1	277	49	77	14.6142
UCUAAGCCUUUCCAUAAGGAAUGUAGCU	chr3:195778200-195778459(-)$1	259	92	120	14.9008
GAGGCUGCUGUCCCUGGGACUCCUAGCC	chr21:47609118-47609371(-)$1	253	177	205	14.3772
CUGCUGGAGCCUGAGAUGGGCCCCAGGG	chr9:139253514-139253798(+)$1	284	134	162	11.4296
CCCCCAGUGAGGGGUUCUCCUGUCUGGG	chr1:247462791-247463033(-)$1	242	112	140	14.4103
AGGAUGCUUGGGAAGACUCCUAGCUGUC	chr1:156712414-156712648(-)$1	234	184	212	13.3316
CAGGGCUGUCCACCGUUGGUGUGUGCCU	chr20:3913571-3913814(-)$1	243	206	234	13.7909
CAGGCCCCGUGGGCUCUGCUUCUGGGGC	chr9:134372044-134372318(+)$1	274	200	228	12.7572
GUGGGGCGGGGGCUGCGCCCGAGCCCGA	chr19:34287641-34287915(+)$1	274	208	236	12.1415
UGGGCAGUCAGGUCCACACCUAUGUCCA	chr9:136210435-136210676(-)$1	241	101	129	15.4515
AGUCUGUCAUGUUAGUUAAGCAGGCAAG	chr11:118473172-118473455(+)$1	283	223	251	12.1747
AUCAUUAACCACUUAUCAGUGUAUUGAU	chr22:21305514-21305759(+)$1	245	146	174	13.3526
GGCCACUGAGGCGUGGCGCCCGUGGCUG	chrX:38664725-38664975(+)$1	250	17	45	12.3961
UUGGGUGGGAGUGUUGAGCAUCUGUCCC	chr1:156712448-156712664(-)$1	216	147	175	13.2218

#DB
((((.....((((....))))..)))))	chr5:137684690-137684951(+)$1	1	186	214	14.3779
((((((...((((...))))...)))))	chr12:58175246-58175497(+)$1	1	158	186	13.3409
((((((...((((...))))))))))).	chr2:231743658-231743959(+)$1	1	166	194	14.2074
.(.(((..((((....))))..))).).	chr11:45903869-45904120(+)$1	1	3	31	12.5372
(((((...(((((....)))))...)))	chr9:139007991-139008240(-)$1	1	133	161	10.1710
.(((((...((((....))))....)))	chr19:10596722-10597016(-)$1	1	79	107	14.3392
)))))))))((((....))))(((((..	chr22:38881367-38881587(-)$1	1	119	147	11.4675
(((((.(((.((((...)))).)))...	chr7:44747974-44748269(+)$1	1	23	51	12.7397
((.(((...((((....))))...))).	chrX:103438329-103438570(+)$1	1	49	77	16.0236
(((.((((.((((....))))..)))).	chr19:39889018-39889253(+)$1	1	44	72	13.4772
(((((.((..((((...))))..)).))	chr6:18129972-18130230(-)$1	1	79	107	12.9318
((((((.(.((((...))))))))))))	chr16:417308-417549(-)$1	1	107	135	13.4838
(((((((.((((.....)))).)))..)	chr1:151555887-151556126(+)$1	1	3	31	12.2623
((((((...((((......))))..)))	chr4:1809646-1809896(+)$1	1	32	60	11.4038
..(((.(((.((((...)))).)))..)	chr22:29951464-29951690(-)$1	1	97	125	12.3011
(((((((..((((....)))))))))))	chr1:201452627-201452930(-)$1	1	244	272	14.4998
((..(((..((((....))))....)))	chr19:42751644-42751924(-)$1	1	24	52	14.9433
(.(((.(((.(((....)))....))).	chr20:3847768-3848006(+)$1	1	23	51	10.0647
(((..(.(.((((.....)))))).)))	chr12:49330978-49331234(-)$1	1	86	114	11.9176
.((((....((((.....))))...)))	chr17:62117351-62117610(-)$1	1	46	74	12.6646
((((((...((((....)))).))).))	chr19:3544402-3544649(-)$1	1	164	192	15.4757
.(((((...((((....))))...))))	chr8:144103587-144103902(+)$1	1	26	54	15.8625
(.(((((((.(((....)))..))))))	chr19:5206248-5206510(-)$1	1	76	104	10.1002
((((((...((((....))))....)))	chr1:43310034-43310334(+)$1	1	188	216	14.8075
(((.((..((((.....))))...))..	chr17:18147813-18148070(+)$1	1	41	69	12.5279
(.(((((((((((...))))...)))))	chr9:136229810-136230047(-)$1	1	107	135	13.8830
(((((..((((......))))..)))))	chr2:85548337-85548581(-)$1	1	172	200	12.0737
(((((((..((((...))))..))))).	chr1:87572460-87572682(+)$1	1	161	189	12.9294
..(((((((((((....)))).))))))	chr5:10680512-10680756(-)$1	1	92	120	11.8914
)(((.(((.((((.....))))))).))	chr10:81114835-81115088(+)$1	1	198	226	11.4721
((((.....((((....))))))))..)	chr9:130870977-130871237(+)$1	1	8	36	12.0030
((((((..((((.....))))..)))))	chr4:103717748-103717975(-)$1	1	8	36	12.5749
((...((.((((.....)))).))...)	chr17:61669149-61669360(+)$1	1	24	52	11.0888
(.((((...((((.....)))))))).)	chr6:42046975-42047193(+)$1	1	35	63	12.2059
.(((((...((((....))))..)))))	chr22:39127422-39127685(+)$1	1	231	259	14.4069
(.(.(((..((((....))))..)))).	chr10:99520165-99520438(+)$1	1	232	260	15.0733
(((((((..((((...)))).)))))))	chr9:136208714-136208940(-)$1	1	149	177	13.7119
(((((..((((......))))..)))))	chr2:87004378-87004720(+)$1	1	78	106	12.0737
....(((..((((....)))).)))...	chr15:65440608-65440885(-)$1	1	49	77	14.6142
((..(((..((((....))))....)))	chr3:195778200-195778459(-)$1	1	92	120	14.9008
..(((((..((((...))))...)))))	chr21:47609118-47609371(-)$1	1	177	205	14.3772
((.((((.((((.....)))).))))))	chr9:139253514-139253798(+)$1	1	134	162	11.4296
(((((((..((((....))))..)))))	chr1:247462791-247463033(-)$1	1	112	140	14.4103
((((((((.((((....))))))).)))	chr1:156712414-156712648(-)$1	1	184	212	13.3316
..((((....((((...))))...))))	chr20:3913571-3913814(-)$1	1	206	234	13.7909
))(((((((.((((...)))).))))))	chr9:134372044-134372318(+)$1	1	200	228	12.7572
((.((((..((((...))))..)))).)	chr19:34287641-34287915(+)$1	1	208	236	12.1415
((((((...((((....)))).))))))	chr9:136210435-136210676(-)$1	1	101	129	15.4515
..((((((.((((.....))))))).))	chr11:118473172-118473455(+)$1	1	223	251	12.1747
(.((((((.((((....))))..)))))	chr22:21305514-21305759(+)$1	1	146	174	13.3526
((((((.(.((((...))))))))))..	chrX:38664725-38664975(+)$1	1	17	45	12.3961
))))))((((((((...))))...))))	chr1:156712448-156712664(-)$1	1	147	175	13.2218

#PSSM
g : 0.17	e : 0.15	f : 0.13	c : 0.09	d : 0.09	! : 0.09	: : 0.05	b : 0.05	i : 0.03	h : 0.01	[ : 0.01	" : 0.01	G : 0.01	# : 0.01	
e : 0.19	g : 0.17	f : 0.13	[ : 0.11	c : 0.09	d : 0.05	! : 0.05	i : 0.03	a : 0.03	h : 0.01	" : 0.01	: : 0.01	# : 0.01	b : 0.01	
g : 0.24	e : 0.23	f : 0.11	c : 0.09	[ : 0.07	d : 0.07	i : 0.03	! : 0.03	h : 0.01	" : 0.01	a : 0.01	# : 0.01	
e : 0.23	g : 0.21	c : 0.13	d : 0.11	f : 0.09	[ : 0.05	! : 0.05	i : 0.03	h : 0.01	" : 0.01	# : 0.01	
g : 0.21	c : 0.21	e : 0.21	d : 0.11	f : 0.09	$ : 0.03	h : 0.01	i : 0.01	! : 0.01	b : 0.01	[ : 0.01	" : 0.01	
c : 0.21	g : 0.19	e : 0.13	d : 0.09	[ : 0.07	f : 0.07	$ : 0.03	b : 0.03	! : 0.03	h : 0.01	" : 0.01	i : 0.01	a : 0.01	# : 0.01	
" : 0.23	c : 0.21	g : 0.11	! : 0.09	d : 0.07	[ : 0.05	e : 0.05	$ : 0.03	b : 0.03	# : 0.03	i : 0.01	f : 0.01	
! : 0.24	" : 0.23	c : 0.11	d : 0.07	g : 0.07	a : 0.05	[ : 0.05	$ : 0.03	# : 0.03	i : 0.01	b : 0.01	f : 0.01	
" : 0.21	! : 0.21	d : 0.17	[ : 0.15	g : 0.07	c : 0.05	$ : 0.03	# : 0.03	e : 0.01	i : 0.01	
d : 0.84	[ : 0.09	e : 0.01	! : 0.01	# : 0.01	
d : 0.94	c : 0.03	e : 0.01	
d : 0.90	c : 0.03	o : 0.03	e : 0.01	
d : 0.78	n : 0.09	c : 0.03	o : 0.03	m : 0.01	e : 0.01	
m : 0.46	n : 0.19	l : 0.17	d : 0.11	o : 0.05	
m : 0.46	l : 0.28	n : 0.19	o : 0.05	
m : 0.46	l : 0.28	n : 0.19	o : 0.05	
m : 0.44	d : 0.19	n : 0.19	l : 0.11	o : 0.05	
d : 0.82	n : 0.09	c : 0.03	e : 0.01	o : 0.01	
d : 0.92	c : 0.03	e : 0.01	o : 0.01	
d : 0.94	c : 0.03	e : 0.01	
d : 0.75	2 : 0.07	3 : 0.05	a : 0.03	g : 0.01	e : 0.01	4 : 0.01	] : 0.01	
2 : 0.26	] : 0.19	3 : 0.15	d : 0.13	4 : 0.09	g : 0.07	e : 0.05	c : 0.01	
2 : 0.19	3 : 0.19	c : 0.17	g : 0.15	4 : 0.09	d : 0.09	e : 0.05	a : 0.01	b : 0.01	
c : 0.19	g : 0.17	e : 0.15	3 : 0.13	4 : 0.09	d : 0.09	b : 0.03	f : 0.03	i : 0.01	h : 0.01	2 : 0.01	a : 0.01	
c : 0.21	g : 0.17	e : 0.17	d : 0.13	4 : 0.07	3 : 0.05	b : 0.03	] : 0.03	f : 0.03	i : 0.01	h : 0.01	2 : 0.01	
e : 0.21	g : 0.17	d : 0.13	f : 0.11	] : 0.09	c : 0.09	3 : 0.05	2 : 0.05	i : 0.01	h : 0.01	b : 0.01	
g : 0.21	e : 0.17	c : 0.13	f : 0.11	2 : 0.09	d : 0.07	3 : 0.05	a : 0.03	] : 0.03	i : 0.01	h : 0.01	q : 0.01	
e : 0.19	g : 0.19	c : 0.15	] : 0.11	f : 0.11	d : 0.05	2 : 0.05	3 : 0.03	i : 0.01	h : 0.01	q : 0.01	b : 0.01	

#score	681.6687272535307
#seq	52
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_CDS_m3_run2.txt

#BEAR
ddddqqqqqqqqddd	chr12:46320163-46320474(-)$1	311	0	15	12.2112
eeeeqqqqqqqqeee	chr1:214816305-214816544(+)$1	239	163	178	10.5987
ddddqqqqqqqqddd	chr11:62298842-62299120(-)$1	278	102	117	12.2112
eeeerrrrrrrrree	chr7:91708343-91708627(+)$1	284	51	66	7.1969
g!!aqqqqqqqqa]g	chr8:101725257-101725496(-)$1	239	198	213	10.2728
ddddqqqqqqqqddd	chr11:62284844-62285115(-)$1	271	186	201	12.2112
ggggrrrrrrrrrgg	chr7:91623834-91624063(+)$1	229	120	135	6.9316
dcccqqqqqqqqccc	chr7:91667875-91668120(+)$1	245	126	141	11.2149
ggggqqqqqqqqggg	chrM:12622-12843(+)$1	221	15	30	10.2993
bcccqqqqqqqqccc	chr11:62291603-62291812(-)$1	209	146	161	10.6777
cccrrrrrrrrrccc	chr1:220152740-220153016(-)$1	276	80	95	7.3119
ddddpppppppdddd	chr7:26232052-26232297(-)$1	245	140	155	6.6881
eeeeqqqqqqqqeee	chr1:165723364-165723613(-)$1	249	36	51	10.5987
#cccqqqqqqqqccc	chr14:56107746-56108026(+)$1	280	253	268	10.7677
ddddpppppppdddd	chr21:34931479-34931768(+)$1	289	101	116	6.6881
ddddpppppppdddd	chr2:238672616-238672920(+)$1	304	167	182	6.6881
eeeerrrrrrrrree	chr7:26233155-26233376(-)$1	221	125	140	7.1969
ddddssssssssssd	chr7:91631594-91631847(+)$1	253	65	80	7.1899
ddddqqqqqqqqddd	chr18:9254585-9254877(+)$1	292	227	242	12.2112
ddddqqqqqqqqddd	chr4:13605609-13605939(-)$1	330	286	301	12.2112
:cccqqqqqqqqccc	chrM:12643-12853(+)$1	210	29	44	10.0573
ddddqqqqqqqqddd	chr11:62284793-62285044(-)$1	251	115	130	12.2112
ggggqqqqqqqqggg	chr1:220195597-220195855(-)$1	258	173	188	10.2993
[cccqqqqqqqqccc	chr5:70806029-70806277(+)$1	248	6	21	10.8592
ddddqqqqqqqqddd	chr3:37368338-37368589(+)$1	251	7	22	12.2112
ddddpppppppdddd	chr21:34921813-34922083(+)$1	270	227	242	6.6881
cccrrrrrrrrrccc	chr2:55771958-55772236(+)$1	278	202	217	7.3119
ddddssssssssssd	chr21:38528976-38529280(+)$1	304	17	32	7.1899
ddddqqqqqqqqddd	chr5:10264737-10265057(+)$1	320	274	289	12.2112
ddddqqqqqqqqddd	chrM:14367-14602(-)$1	235	73	88	12.2112
ddddpppppppdddd	chr4:68383826-68384144(-)$1	318	274	289	6.6881
ggggqqqqqqqqggg	chrM:12513-12766(+)$1	253	124	139	10.2993
ddbbqqqqqqqqbb]	chr3:37366942-37367158(+)$1	216	27	42	9.9193
ggggqqqqqqqqggg	chr20:32681408-32681637(-)$1	229	167	182	10.2993
eeeerrrrrrrrree	chr7:26233143-26233355(-)$1	212	104	119	7.1969
ddddssssssssssd	chrM:12784-12987(+)$1	203	154	169	7.1899
ddddqqqqqqqqddd	chr8:53569110-53569406(-)$1	296	276	291	12.2112
:cccqqqqqqqqccc	chrM:12653-12861(+)$1	208	19	34	10.0573
ddddwwwwwwwwwww	chrM:13255-13466(+)$1	211	118	133	7.8916
ddddqqqqqqqqddd	chr1:171526286-171526511(+)$1	225	35	50	12.2112
eeeeqqqqqqqqeee	chr6:87970248-87970555(+)$1	307	170	185	10.5987
e!!aqqqqqqqqa22	chr7:158485905-158486185(-)$1	280	125	140	9.8297
:cccqqqqqqqqccc	chr12:122995555-122995760(-)$1	205	128	143	10.0573
ddddqqqqqqqqddd	chrM:14416-14644(-)$1	228	115	130	12.2112
ddddqqqqqqqqddd	chr11:62293662-62293889(-)$1	227	154	169	12.2112
c[bbqqqqqqqqbb]	chr3:37365765-37366020(+)$1	255	45	60	9.3276
ddddqqqqqqqqddd	chr12:6690356-6690607(-)$1	251	117	132	12.2112
ddddqqqqqqqqddd	chr5:33467644-33467905(+)$1	261	190	205	12.2112
====qqqqqqqq===	chr12:122992666-122992913(-)$1	247	221	236	10.4452
ddddqqqqqqqqddd	chrM:14452-14671(-)$1	219	142	157	12.2112
:cccqqqqqqqqccc	chrM:12661-12887(+)$1	226	11	26	10.0573
ddddqqqqqqqqddd	chr2:55253846-55254193(-)$1	347	202	217	12.2112
ddddpppppppdddd	chr11:11964381-11964703(+)$1	322	152	167	6.6881
ddddpppppppdddd	chr7:72903449-72903686(-)$1	237	148	163	6.6881
ddddqqqqqqqqddd	chr14:61278600-61278930(+)$1	330	286	301	12.2112
ggggqqqqqqqqggg	chr5:72286241-72286543(+)$1	302	248	263	10.2993

#otherMatches

#Seq PSSM
CAUCUAGAUGCUGAU	chr12:46320163-46320474(-)$1	311	0	15	12.2112
CUGCCUUAGGAAGCA	chr1:214816305-214816544(+)$1	239	163	178	10.5987
UCCUAAAGUAAAGGG	chr11:62298842-62299120(-)$1	278	102	117	12.2112
UAUUGAAGAAAAAAA	chr7:91708343-91708627(+)$1	284	51	66	7.1969
CAGCAGGAAGAAGGG	chr8:101725257-101725496(-)$1	239	198	213	10.2728
GGAAAAGUAACAUUC	chr11:62284844-62285115(-)$1	271	186	201	12.2112
CAUUAAACAAAGAGA	chr7:91623834-91624063(+)$1	229	120	135	6.9316
UGAUAUACCAGAAUC	chr7:91667875-91668120(+)$1	245	126	141	11.2149
AUAGAAUUCUCACUG	chrM:12622-12843(+)$1	221	15	30	10.2993
UGAGUAUUUCAUCUC	chr11:62291603-62291812(-)$1	209	146	161	10.6777
GGGCAGAAUUUUUCC	chr1:220152740-220153016(-)$1	276	80	95	7.3119
UGGUGGGAGGAGCCG	chr7:26232052-26232297(-)$1	245	140	155	6.6881
AGUUUAUUUAACAGC	chr1:165723364-165723613(-)$1	249	36	51	10.5987
AUACUACGUUUUGUA	chr14:56107746-56108026(+)$1	280	253	268	10.7677
GUGAAUAAACCUCAU	chr21:34931479-34931768(+)$1	289	101	116	6.6881
GCUGAGGCAGGCGGC	chr2:238672616-238672920(+)$1	304	167	182	6.6881
CUGGAUAUGGCAACC	chr7:26233155-26233376(-)$1	221	125	140	7.1969
AGUCCAAAUCCAAAG	chr7:91631594-91631847(+)$1	253	65	80	7.1899
AGAGGAGGGGAACUU	chr18:9254585-9254877(+)$1	292	227	242	12.2112
GUCUAAAGUUGAAGA	chr4:13605609-13605939(-)$1	330	286	301	12.2112
AAACAUUAAUCAGUU	chrM:12643-12853(+)$1	210	29	44	10.0573
GGAAAAGUAACAUUC	chr11:62284793-62285044(-)$1	251	115	130	12.2112
AUAUCUCCUUCAAUA	chr1:220195597-220195855(-)$1	258	173	188	10.2993
AACUGAAAGAGAAGU	chr5:70806029-70806277(+)$1	248	6	21	10.8592
UCUCAAAUGGAAGAG	chr3:37368338-37368589(+)$1	251	7	22	12.2112
GCUUCCUACAAGAGC	chr21:34921813-34922083(+)$1	270	227	242	6.6881
AACAAAAUGGAAGUU	chr2:55771958-55772236(+)$1	278	202	217	7.3119
AGCAUCUCUUAAACU	chr21:38528976-38529280(+)$1	304	17	32	7.1899
AAUAAAAAUAGCUGU	chr5:10264737-10265057(+)$1	320	274	289	12.2112
GUUAUAUGGGUUUAA	chrM:14367-14602(-)$1	235	73	88	12.2112
AGUUAUUAAGAAACU	chr4:68383826-68384144(-)$1	318	274	289	6.6881
AUAGAAUUCUCACUG	chrM:12513-12766(+)$1	253	124	139	10.2993
GCCUAGAGGACAAGA	chr3:37366942-37367158(+)$1	216	27	42	9.9193
GUAUACAUUUACAUA	chr20:32681408-32681637(-)$1	229	167	182	10.2993
CUGGAUAUGGCAACC	chr7:26233143-26233355(-)$1	212	104	119	7.1969
UAGCCCUUCUAAACG	chrM:12784-12987(+)$1	203	154	169	7.1899
GAGACCUUGAAAUCU	chr8:53569110-53569406(-)$1	296	276	291	12.2112
AAACAUUAAUCAGUU	chrM:12653-12861(+)$1	208	19	34	10.0573
UCAUCCACAACCUUA	chrM:13255-13466(+)$1	211	118	133	7.8916
UGAACUGUUGCAUUC	chr1:171526286-171526511(+)$1	225	35	50	12.2112
UCUCUGAAACGUGGG	chr6:87970248-87970555(+)$1	307	170	185	10.5987
UGGCAGGUAGUGGAA	chr7:158485905-158486185(-)$1	280	125	140	9.8297
GUCAUCUCGAUUUGA	chr12:122995555-122995760(-)$1	205	128	143	10.0573
GUUAUAUGGGUUUAA	chrM:14416-14644(-)$1	228	115	130	12.2112
ACCCAAAGUGAAGGG	chr11:62293662-62293889(-)$1	227	154	169	12.2112
GAGCAGACAAAAGCA	chr3:37365765-37366020(+)$1	255	45	60	9.3276
GGUUAAAUCUACAGC	chr12:6690356-6690607(-)$1	251	117	132	12.2112
CUCCAUGGAAAAGGA	chr5:33467644-33467905(+)$1	261	190	205	12.2112
GAAAAAUAUUACUUU	chr12:122992666-122992913(-)$1	247	221	236	10.4452
GUUAUAUGGGUUUAA	chrM:14452-14671(-)$1	219	142	157	12.2112
AAACAUUAAUCAGUU	chrM:12661-12887(+)$1	226	11	26	10.0573
ACUUGGAAAGUAAAG	chr2:55253846-55254193(-)$1	347	202	217	12.2112
CAGAAGAAGACUCUG	chr11:11964381-11964703(+)$1	322	152	167	6.6881
CUUGAUCCAUACAAG	chr7:72903449-72903686(-)$1	237	148	163	6.6881
AGGAUUUACCUUUCC	chr14:61278600-61278930(+)$1	330	286	301	12.2112
GAAUACUUUAUAGUU	chr5:72286241-72286543(+)$1	302	248	263	10.2993

#DB
((((........)))	chr12:46320163-46320474(-)$1	1	0	15	12.2112
((((........)))	chr1:214816305-214816544(+)$1	1	163	178	10.5987
((((........)))	chr11:62298842-62299120(-)$1	1	102	117	12.2112
((((.........))	chr7:91708343-91708627(+)$1	1	51	66	7.1969
(..(........).)	chr8:101725257-101725496(-)$1	1	198	213	10.2728
((((........)))	chr11:62284844-62285115(-)$1	1	186	201	12.2112
((((.........))	chr7:91623834-91624063(+)$1	1	120	135	6.9316
)(((........)))	chr7:91667875-91668120(+)$1	1	126	141	11.2149
((((........)))	chrM:12622-12843(+)$1	1	15	30	10.2993
)(((........)))	chr11:62291603-62291812(-)$1	1	146	161	10.6777
(((.........)))	chr1:220152740-220153016(-)$1	1	80	95	7.3119
((((.......))))	chr7:26232052-26232297(-)$1	1	140	155	6.6881
((((........)))	chr1:165723364-165723613(-)$1	1	36	51	10.5987
.(((........)))	chr14:56107746-56108026(+)$1	1	253	268	10.7677
((((.......))))	chr21:34931479-34931768(+)$1	1	101	116	6.6881
((((.......))))	chr2:238672616-238672920(+)$1	1	167	182	6.6881
((((.........))	chr7:26233155-26233376(-)$1	1	125	140	7.1969
((((..........)	chr7:91631594-91631847(+)$1	1	65	80	7.1899
((((........)))	chr18:9254585-9254877(+)$1	1	227	242	12.2112
((((........)))	chr4:13605609-13605939(-)$1	1	286	301	12.2112
.(((........)))	chrM:12643-12853(+)$1	1	29	44	10.0573
((((........)))	chr11:62284793-62285044(-)$1	1	115	130	12.2112
((((........)))	chr1:220195597-220195855(-)$1	1	173	188	10.2993
.(((........)))	chr5:70806029-70806277(+)$1	1	6	21	10.8592
((((........)))	chr3:37368338-37368589(+)$1	1	7	22	12.2112
((((.......))))	chr21:34921813-34922083(+)$1	1	227	242	6.6881
(((.........)))	chr2:55771958-55772236(+)$1	1	202	217	7.3119
((((..........)	chr21:38528976-38529280(+)$1	1	17	32	7.1899
((((........)))	chr5:10264737-10265057(+)$1	1	274	289	12.2112
((((........)))	chrM:14367-14602(-)$1	1	73	88	12.2112
((((.......))))	chr4:68383826-68384144(-)$1	1	274	289	6.6881
((((........)))	chrM:12513-12766(+)$1	1	124	139	10.2993
((((........)).	chr3:37366942-37367158(+)$1	1	27	42	9.9193
((((........)))	chr20:32681408-32681637(-)$1	1	167	182	10.2993
((((.........))	chr7:26233143-26233355(-)$1	1	104	119	7.1969
((((..........)	chrM:12784-12987(+)$1	1	154	169	7.1899
((((........)))	chr8:53569110-53569406(-)$1	1	276	291	12.2112
.(((........)))	chrM:12653-12861(+)$1	1	19	34	10.0573
((((...........	chrM:13255-13466(+)$1	1	118	133	7.8916
((((........)))	chr1:171526286-171526511(+)$1	1	35	50	12.2112
((((........)))	chr6:87970248-87970555(+)$1	1	170	185	10.5987
(..(........)..	chr7:158485905-158486185(-)$1	1	125	140	9.8297
.(((........)))	chr12:122995555-122995760(-)$1	1	128	143	10.0573
((((........)))	chrM:14416-14644(-)$1	1	115	130	12.2112
((((........)))	chr11:62293662-62293889(-)$1	1	154	169	12.2112
(.((........)).	chr3:37365765-37366020(+)$1	1	45	60	9.3276
((((........)))	chr12:6690356-6690607(-)$1	1	117	132	12.2112
((((........)))	chr5:33467644-33467905(+)$1	1	190	205	12.2112
((((........)))	chr12:122992666-122992913(-)$1	1	221	236	10.4452
((((........)))	chrM:14452-14671(-)$1	1	142	157	12.2112
.(((........)))	chrM:12661-12887(+)$1	1	11	26	10.0573
((((........)))	chr2:55253846-55254193(-)$1	1	202	217	12.2112
((((.......))))	chr11:11964381-11964703(+)$1	1	152	167	6.6881
((((.......))))	chr7:72903449-72903686(-)$1	1	148	163	6.6881
((((........)))	chr14:61278600-61278930(+)$1	1	286	301	12.2112
((((........)))	chr5:72286241-72286543(+)$1	1	248	263	10.2993

#PSSM
d : 0.55	e : 0.12	g : 0.12	: : 0.07	c : 0.05	b : 0.01	# : 0.01	[ : 0.01	= : 0.01	
d : 0.53	c : 0.17	e : 0.10	g : 0.10	! : 0.03	[ : 0.01	= : 0.01	
d : 0.51	c : 0.17	e : 0.10	g : 0.10	! : 0.03	b : 0.03	= : 0.01	
d : 0.51	c : 0.14	e : 0.10	g : 0.10	a : 0.03	r : 0.03	b : 0.03	= : 0.01	
q : 0.69	p : 0.12	r : 0.10	s : 0.05	w : 0.01	
q : 0.69	p : 0.12	r : 0.10	s : 0.05	w : 0.01	
q : 0.69	p : 0.12	r : 0.10	s : 0.05	w : 0.01	
q : 0.69	p : 0.12	r : 0.10	s : 0.05	w : 0.01	
q : 0.69	p : 0.12	r : 0.10	s : 0.05	w : 0.01	
q : 0.69	p : 0.12	r : 0.10	s : 0.05	w : 0.01	
q : 0.69	p : 0.12	r : 0.10	s : 0.05	w : 0.01	
q : 0.69	d : 0.12	r : 0.10	s : 0.05	w : 0.01	
d : 0.44	c : 0.17	g : 0.08	r : 0.07	e : 0.05	s : 0.05	a : 0.03	b : 0.03	w : 0.01	= : 0.01	
d : 0.44	c : 0.17	e : 0.10	g : 0.10	s : 0.05	b : 0.03	] : 0.01	w : 0.01	2 : 0.01	= : 0.01	
d : 0.49	c : 0.17	g : 0.12	e : 0.10	] : 0.03	w : 0.01	2 : 0.01	= : 0.01	

#score	556.0637554804629
#seq	56
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_transcript_m1_run1.txt

#BEAR
gggggg[dddd[ccc[cccmmmmccc]ccc]dddd333gg	chr15:85070017-85070271(-)$1	254	58	98	14.3420
====[dddd[ccc"""bbnnnnnbb22ccc]dddd]====	chr17:17718546-17718789(-)$1	243	17	57	12.7893
ddd[ggggggg!!ccc!!aooooooa22cccggggggg]d	chr20:60907675-60907911(-)$1	236	82	122	15.0974
fffff[dddd"""bb[a[aooooooa]a]bb4444ddddf	chr19:36297411-36297645(-)$1	234	133	173	13.1890
ggg[ffffff"""ggggggglllgggggggffffff]ggg	chr16:58581502-58581790(-)$1	288	234	274	12.4896
iiiiii####ggggggg[bblllbb]ggggggg22iiiii	chr17:46053088-46053342(+)$1	254	70	110	13.7758
dddd[ccc[eeeee[cccnnnnnccc22eeeee]ccc]dd	chr5:175955980-175956234(-)$1	254	104	144	11.9301
=========[a[a[ffffffmmmmffffffa]a=======	chr17:72769068-72769334(-)$1	266	115	155	14.1615
eeeee!!==========oooooo==========333eeee	chr17:48445559-48445808(-)$1	249	70	110	16.5609
=========bbeeeeecccmmmmccc22eeeee]bb22==	chr17:79864334-79864565(-)$1	231	61	101	13.0531
i:ccc[cccbb"""ccc[ammmma]ccc333bb]ccc]cc	chr17:74730559-74730802(-)$1	243	197	237	13.3125
ddd[a[ggggggg[cccoooooocccgggggggadddd22	chr11:70253243-70253482(+)$1	239	179	219	14.0502
=========ggggggg[bbnnnnnbbggggggg4444===	chr17:27185229-27185493(+)$1	264	104	144	14.4805
d[dddd!!ggggggg[a[bbmmmmbb]a]ggggggg]ddd	chr3:38167275-38167544(-)$1	269	123	163	12.3697
[ccc[a[dddd"""ddddrrrrrrrrrdddd333dddd]a	chr19:10224211-10224450(+)$1	239	42	82	11.7100
$$$$$ggggggg!!ddddmmmmdddd4444ggggggg333	chr16:85839177-85839436(+)$1	259	52	92	11.7986
!dddd[dddd!!ccc[accclllccc]a]cccdddd]ddd	chr17:76113627-76113883(-)$1	256	182	222	13.2817
iiiiiiiii$$$$$ffffffnnnnnffffffiiiiiiiii	chr12:9252029-9252270(-)$1	241	1	41	12.1899
===========####ddddmmmmdddd===========::	chr16:74921574-74921807(-)$1	233	74	114	14.4068
c=========="""cccccclllccc]ccc==========	chr16:555361-555645(+)$1	284	18	58	18.7879
ggeeeee!!ccc[ccc[ccclllccc22ccc]ccc]eeee	chr15:91485987-91486261(+)$1	274	134	174	13.8762
c============"""bbnnnnnbb333============	chr19:34883998-34884251(+)$1	253	103	143	16.7984
dddd[cccbbabb[a[cccmmmmccc]a]bb4444a]bb]	chr21:46193488-46193783(-)$1	295	213	253	12.4269
iiii[a[dddd!!a[cccnnnnnccc]a]dddd333a]ii	chr17:76120217-76120471(-)$1	254	118	158	15.3707
ii[bb[iiiiiiiii"""bbmmmmbb]iiiiiiiii22bb	chr2:234197357-234197590(+)$1	233	34	74	13.1900
##ccc!!ffffff[cccooooooccc333ffffffcccdd	chr10:97423937-97424201(-)$1	264	82	122	13.8715
iiiiiccccccdddd[cccmmmmccc]dddd4444ccc]c	chr20:61526163-61526410(-)$1	247	11	51	13.3775
ddccc:ccc[a!!gggggggooooooggggggg22a]ccc	chr5:176522182-176522432(+)$1	250	75	115	11.8269
ggggggg==========oooooo==========333gggg	chr10:101996746-101996970(-)$1	224	81	121	17.6979
ggggg[eeeee!!ccc[cccmmmmcccccceeeee]gggg	chr2:234198338-234198607(+)$1	269	107	147	13.0440
ffffccc[============lll============]cccc	chr22:50873245-50873497(+)$1	252	125	165	15.9122
b[eeeeedddd"""ddddoooooodddd]dddd]eeeee]	chr16:89627818-89628075(+)$1	257	164	204	12.5844
:=============rrrrrrrrr=============dddd	chr22:50878220-50878488(+)$1	268	54	94	13.5999
ffffff!!dddd!!cccooooooccc4444ddddffffff	chr2:101889405-101889608(-)$1	203	42	82	13.5090
ddd[bb!!dddd!!cccooooooccc22dddd22bbdddd	chr17:78311220-78311480(+)$1	260	97	137	12.7355
"""ggggggg[ccccccooooooccc]ccc]ggggggg]d	chr12:133148699-133148974(+)$1	275	113	153	15.6247
==============eeeeemmmmeeeee333=========	chr2:201997594-201997876(+)$1	282	171	211	15.7001
[=========="""eeeeennnnneeeee22=========	chr3:133474054-133474282(+)$1	228	79	119	15.2329
$$===========!!a[ccclllccc]a22==========	chr17:7809331-7809609(+)$1	278	187	227	17.4611
hhhhhhhbb[ccc[cccooooooccc22ccc]bb333hhh	chr9:140481417-140481714(-)$1	297	188	228	12.9095
dddd[bb"""bb[ccccccmmmmccc]ccc]bb]bbdddd	chr11:65161368-65161635(+)$1	267	118	158	11.9192
ggggg[ccc[a[cccacccmmmmccc]a333ccc]a]ccc	chr12:7076420-7076645(-)$1	225	94	134	15.2528
ffffff[a[iiiiiiiiiooooooiiiiiiiii]afffff	chr2:55461090-55461339(+)$1	249	102	142	14.3180
===========!!a[ddddmmmmdddda============	chr1:155279675-155279924(+)$1	249	111	151	16.5232
b[gggggggeeeee!!ddddllldddd4444eeeee]ggg	chr19:650205-650453(-)$1	248	187	227	12.0556
]dddd============oooooo============GGGGG	chr5:27484880-27485114(+)$1	234	192	232	13.3340
!!ccc"""cccbb[ddddoooooodddd]bb]ccc]ccc2	chr2:97530952-97531202(-)$1	250	67	107	13.0573
[ccc"""cccccc!!cccnnnnnccc22ccc]ccc333cc	chr20:62331945-62332199(-)$1	254	185	225	14.8115
ii[bb[iiiiiiiii"""bbmmmmbb]iiiiiiiii22bb	chr2:234197291-234197509(+)$1	218	100	140	13.1900
========[ffffff"""bbmmmmbb]ffffff]======	chr12:125263037-125263281(-)$1	244	95	135	12.9917
::================oooooo================	chr10:97386445-97386698(-)$1	253	87	127	16.4879
iiiiiiiii$$$$$cccrrrrrrrrrccc4444iiiiiii	chr18:47340452-47340659(+)$1	207	81	121	14.1054
eeee"""dddd"""ddddrrrrrrrrrdddd333dddd]e	chr4:2906341-2906618(+)$1	277	210	250	11.2466
======!!ccc"""eeeeemmmmeeeee4444ccc]====	chr7:98479329-98479533(+)$1	204	36	76	14.8521
d:dddd!!a[ccc[cccooooooccc]ccc]a333ddddH	chr3:48463106-48463343(-)$1	237	120	160	13.2956
ffff!!dddd$$$$$cccnnnnnccc333dddd]ffffff	chr12:133358970-133359263(-)$1	293	115	155	12.5363
ggg::===========[ccclllccc]===========ff	chr2:75105669-75105940(+)$1	271	120	160	15.2699
cc[eeeee[a####ddddoooooodddd333aeeeee333	chr11:64815104-64815395(-)$1	291	146	186	13.6864
b[eeeee[ccc[a!!cccrrrrrrrrrccc22accceeee	chr17:73872759-73873044(-)$1	285	141	181	11.4852

#otherMatches

#Seq PSSM
UUAACACUGGUCUGCUACUGUUAAGUUGUAUGCCAUUUUG	chr15:85070017-85070271(-)$1	254	58	98	14.3420
CACCCAGGGGCAUGCCGGCACUUCCCAGUGGCCCUAGGUG	chr17:17718546-17718789(-)$1	243	17	57	12.7893
GGGAGGUGGGAAGGGCGAGGGGUGGCGGGCCUCCCGUCAC	chr20:60907675-60907911(-)$1	236	82	122	15.0974
UGCGUGCCCUAUAGGACACAUUCGAGCGGCUGGGGAGGGA	chr19:36297411-36297645(-)$1	234	133	173	13.1890
AAUUUCUCAGAUCGUUCUUUGCUGAAGAACUUGGGACAUU	chr16:58581502-58581790(-)$1	288	234	274	12.4896
CAUGUGGCCCAGGCCAAAGCCCAGUGUUGGCCUUACGCAU	chr17:46053088-46053342(+)$1	254	70	110	13.7758
GGCUGGUGAGAGCAACGCCUGACGUGCAUGUUCCCACAGG	chr5:175955980-175956234(-)$1	254	104	144	11.9301
UCUGGGGAGUGUGUGUGAUAGCCCUGUCACCUCCUCCUCA	chr17:72769068-72769334(-)$1	266	115	155	14.1615
GUGAGAAGUCUGUCCCAAAAUUCUGGGACGGACCACCUCg	chr17:48445559-48445808(-)$1	249	70	110	16.5609
GGCGGGGAGGCCCUUGGGCAUGAGCUGUCAGGGAGCUGCU	chr17:79864334-79864565(-)$1	231	61	101	13.0531
UAAGGUGGCGUGUUGCAGUGCAGAGUGCUUGGCUGUUUCC	chr17:74730559-74730802(-)$1	243	197	237	13.3125
GCCACGCUGUGUCCAUCGCCCAGGAUGACGCGGGGGCCGA	chr11:70253243-70253482(+)$1	239	179	219	14.0502
AGGGCAGGAGGAAGAGUGACCAUUUCCUUUUCCUUCUUCC	chr17:27185229-27185493(+)$1	264	104	144	14.4805
GGGAGGCAGAGGGCCAGUGUGUCAGCUCAGGUCUUUACCU	chr3:38167275-38167544(-)$1	269	123	163	12.3697
CAGGAGCCGCCUUAUGGGGGAAUAGGGCUCAGCUGGUGAC	chr19:10224211-10224450(+)$1	239	42	82	11.7100
CUGUGUUUCCUCCUUCACAAGUGUGGUUUUGGGGAGAAGU	chr16:85839177-85839436(+)$1	259	52	92	11.7986
CCCCUUCCGGACCCUGGACACCAUGUACGAGGCCGGCAGG	chr17:76113627-76113883(-)$1	256	182	222	13.2817
GAGGGCUUUGAUAGGGUUUUUUUCUAAAGCUAGAGUCCUU	chr12:9252029-9252270(-)$1	241	1	41	12.1899
UGCUGUUUUCUUAAUGUGAACUGUCAUGGGGAAUGGUAUU	chr16:74921574-74921807(-)$1	233	74	114	14.4068
AAGUUGGAUCCAACACCAGCCUAGCUAGGUGGAUCUGAUU	chr16:555361-555645(+)$1	284	18	58	18.7879
UGUCUUCUUGUUGUUGCCAGAUCCUGCCCGGGAGCUGAAG	chr15:91485987-91486261(+)$1	274	134	174	13.8762
GGGGGCGGGGUGUGCCGGCCCUCCCUCAGCACCUUGUCCU	chr19:34883998-34884251(+)$1	253	103	143	16.7984
CUCCACGCGCCAGGCGAUGACCCCAUGGGCUACGAGAGCA	chr21:46193488-46193783(-)$1	295	213	253	12.4269
GCCUCCUCCUGCUCUGCCCCUGUGGCUGUCAGGCCUGAGG	chr17:76120217-76120471(-)$1	254	118	158	15.3707
CUCUCCUCCAUCGCACUUCAGAAGUGCUGCGAUGGGCAGA	chr2:234197357-234197590(+)$1	233	34	74	13.1900
AAGUUAGAGUGCUAUAUGAAUGGGUACCAAGCGCUGACCU	chr10:97423937-97424201(-)$1	264	82	122	13.8715
UGAGUGCUGAGGGGUACCUGCGGAGGCACCCAGGACUCGA	chr20:61526163-61526410(-)$1	247	11	51	13.3775
ccugcaccugccucUGCAUGCUCCCUCGUGCAGUUGGAGG	chr5:176522182-176522432(+)$1	250	75	115	11.8269
GUCCUUACAGACAGGCUGACACAGGCUUGUCUGGCCUGAG	chr10:101996746-101996970(-)$1	224	81	121	17.6979
CAUAGGCAGGGCCUGGCGCCCUGAGGCUCACCCUGGCUGU	chr2:234198338-234198607(+)$1	269	107	147	13.0440
CCCGAUGGUGCCUGUUGCUUUCAGGGCAGCGGGUGGCAUG	chr22:50873245-50873497(+)$1	252	125	165	15.9122
CAGGUGGCCGGCAUUCACAAGAAGGUGGCCCGGACCAUCG	chr16:89627818-89628075(+)$1	257	164	204	12.5844
ACCUUUCUGCUGGUAACAAAUGCGCUGGCAGGAGGGGGCU	chr22:50878220-50878488(+)$1	268	54	94	13.5999
UCUUUUUAGGGAUCCUGAACACACAGCCUUUCCCAGAAGA	chr2:101889405-101889608(-)$1	203	42	82	13.5090
CACAGGAGGGAGAAGGGCAAGAUCCUCGCUCCAACCGUGG	chr17:78311220-78311480(+)$1	260	97	137	12.7355
CCCGGGGCCCAGCAACGGUGUCGUGUGUGCGGGGCCUCAC	chr12:133148699-133148974(+)$1	275	113	153	15.6247
AGAUUGGUGAGGAUUUGGAUAAAUCUGAUGUGUCCUCAUU	chr2:201997594-201997876(+)$1	282	171	211	15.7001
CUGGGUGGGGUGAUGCCAUUGGCUGUGGCCAGCCUCACUC	chr3:133474054-133474282(+)$1	228	79	119	15.2329
UCCCCAGGGGAGGGGCGUUGAAGCAAGGAGCCUCUCCUGG	chr17:7809331-7809609(+)$1	278	187	227	17.4611
CCAGGUGGUGCACCUCAACGCUGUGACCGUGGACAAUCGC	chr9:140481417-140481714(-)$1	297	188	228	12.9095
GCAGUGACCCAGCCUCUCUCCCCAGAUGAGCCUUUCCUGC	chr11:65161368-65161635(+)$1	267	118	158	11.9192
GUCCACGGUAGGGCUGGGCACAAGCCACCUGAGCGCAACC	chr12:7076420-7076645(-)$1	225	94	134	15.2528
UAAGUCUGGAGCACAUCACAGGCUUGGUGUGCUGUGACUU	chr2:55461090-55461339(+)$1	249	102	142	14.3180
GAGGGGAGCAGCUGAUCAGGUUUCUGACUUGUUUUUCUUC	chr1:155279675-155279924(+)$1	249	111	151	16.5232
CACGCCCGCCACCAUCCCCAGCCUGGGCCCCUGGUGAGUG	chr19:650205-650453(-)$1	248	187	227	12.0556
AUGAGGAAAAGCAUAAGUACUGCUUUAUGCUUUUCUUAUG	chr5:27484880-27485114(+)$1	234	192	232	13.3340
CUUGGUUCCACUUGGGUCUGUGUUGGCCGGAUGUGUCCAU	chr2:97530952-97531202(-)$1	250	67	107	13.0573
ACUGCACCAGCAAGAUCGGCAGGCGAGAUUGCCUGACCCA	chr20:62331945-62332199(-)$1	254	185	225	14.8115
CUCUCCUCCAUCGCACUUCAGAAGUGCUGCGAUGGGCAGA	chr2:234197291-234197509(+)$1	218	100	140	13.1900
GUGGGGUUUGGUGACAGGGCGUGGGUGGUCACCCAGCUUU	chr12:125263037-125263281(-)$1	244	95	135	12.9917
GGUAGUUCUCUCUCUAGUAGUAGAACUAGAGAGAGAACUA	chr10:97386445-97386698(-)$1	253	87	127	16.4879
GCCCGCAGUAUUUUCCUUAUAUGAUCAGGUCCCAUUGCGG	chr18:47340452-47340659(+)$1	207	81	121	14.1054
GCGAUGUGGAGGUUCCUGCUAGUGUCACAGGUUACUCCUU	chr4:2906341-2906618(+)$1	277	210	250	11.2466
guguguguuuguguguguguguauaugCUUGUCAGUGCAU	chr7:98479329-98479533(+)$1	204	36	76	14.8521
UCGCCCAGGUGCAGUCGCCGUUCUGAGUGCUCGAGGGGCC	chr3:48463106-48463343(-)$1	237	120	160	13.2956
CUGUUUCUGGGGUAUGUGAACUCCACUCACCAGUGCAGGU	chr12:133358970-133359263(-)$1	293	115	155	12.5363
CACAUGCUAUCUUUCUGUUUCCCAGGGAGAAGGAUGGCAU	chr2:75105669-75105940(+)$1	271	120	160	15.2699
GAGGGCCGCGCACCGAGACUAAAUUCUCCUUCCGGCCAGA	chr11:64815104-64815395(-)$1	291	146	186	13.6864
UGUCCACAGGCUGAGCAGUCCAAAGUCCUGAGCGCCGUGG	chr17:73872759-73873044(-)$1	285	141	181	11.4852

#DB
((((((.((((.(((.(((....))).))).))))...))	chr15:85070017-85070271(-)$1	1	58	98	14.3420
((((.((((.(((...((.....))..))).)))).))))	chr17:17718546-17718789(-)$1	1	17	57	12.7893
(((.(((((((..(((..(......)..)))))))))).)	chr20:60907675-60907911(-)$1	1	82	122	15.0974
(((((.((((...((.(.(......).).))....)))))	chr19:36297411-36297645(-)$1	1	133	173	13.1890
(((.((((((...(((((((...))))))))))))).)))	chr16:58581502-58581790(-)$1	1	234	274	12.4896
((((((....(((((((.((...)).)))))))..)))))	chr17:46053088-46053342(+)$1	1	70	110	13.7758
((((.(((.(((((.(((.....)))..))))).))).))	chr5:175955980-175956234(-)$1	1	104	144	11.9301
(((((((((.(.(.((((((....))))))).))))))))	chr17:72769068-72769334(-)$1	1	115	155	14.1615
(((((..((((((((((......))))))))))...))))	chr17:48445559-48445808(-)$1	1	70	110	16.5609
(((((((((((((((((((....)))..))))).))..))	chr17:79864334-79864565(-)$1	1	61	101	13.0531
).(((.(((((...(((.(....).)))...)).))).))	chr17:74730559-74730802(-)$1	1	197	237	13.3125
(((.(.(((((((.(((......)))))))))))))))..	chr11:70253243-70253482(+)$1	1	179	219	14.0502
((((((((((((((((.((.....)))))))))....)))	chr17:27185229-27185493(+)$1	1	104	144	14.4805
(.((((..(((((((.(.((....)).).))))))).)))	chr3:38167275-38167544(-)$1	1	123	163	12.3697
.(((.(.((((...((((.........))))...)))).)	chr19:10224211-10224450(+)$1	1	42	82	11.7100
.....(((((((..((((....))))....)))))))...	chr16:85839177-85839436(+)$1	1	52	92	11.7986
.((((.((((..(((.((((...))).).))))))).)))	chr17:76113627-76113883(-)$1	1	182	222	13.2817
(((((((((.....((((((.....)))))))))))))))	chr12:9252029-9252270(-)$1	1	1	41	12.1899
(((((((((((....((((....)))))))))))))))..	chr16:74921574-74921807(-)$1	1	74	114	14.4068
(((((((((((...((((((...))).)))))))))))))	chr16:555361-555645(+)$1	1	18	58	18.7879
(((((((..(((.(((.(((...)))..))).))).))))	chr15:91485987-91486261(+)$1	1	134	174	13.8762
)((((((((((((...((.....))...))))))))))))	chr19:34883998-34884251(+)$1	1	103	143	16.7984
((((.((((((((.(.(((....))).).))....).)).	chr21:46193488-46193783(-)$1	1	213	253	12.4269
((((.(.((((..(.(((.....))).).))))...).))	chr17:76120217-76120471(-)$1	1	118	158	15.3707
((.((.(((((((((...((....)).)))))))))..))	chr2:234197357-234197590(+)$1	1	34	74	13.1900
..(((..((((((.(((......)))...)))))))))))	chr10:97423937-97424201(-)$1	1	82	122	13.8715
(((((((((((((((.(((....))).))))....))).)	chr20:61526163-61526410(-)$1	1	11	51	13.3775
))))).(((.(..(((((((......)))))))..).)))	chr5:176522182-176522432(+)$1	1	75	115	11.8269
(((((((((((((((((......))))))))))...))))	chr10:101996746-101996970(-)$1	1	81	121	17.6979
(((((.(((((..(((.(((....))))))))))).))))	chr2:234198338-234198607(+)$1	1	107	147	13.0440
))))(((.((((((((((((...)))))))))))).)))(	chr22:50873245-50873497(+)$1	1	125	165	15.9122
(.(((((((((...((((......)))).)))).))))).	chr16:89627818-89628075(+)$1	1	164	204	12.5844
.(((((((((((((.........)))))))))))))((((	chr22:50878220-50878488(+)$1	1	54	94	13.5999
((((((..((((..(((......)))....))))))))))	chr2:101889405-101889608(-)$1	1	42	82	13.5090
(((.((..((((..(((......)))..))))..))))))	chr17:78311220-78311480(+)$1	1	97	137	12.7355
...(((((((.((((((......))).))).))))))).)	chr12:133148699-133148974(+)$1	1	113	153	15.6247
(((((((((((((((((((....)))))...)))))))))	chr2:201997594-201997876(+)$1	1	171	211	15.7001
.((((((((((...(((((.....)))))..)))))))))	chr3:133474054-133474282(+)$1	1	79	119	15.2329
..(((((((((((..(.(((...))).)..))))))))))	chr17:7809331-7809609(+)$1	1	187	227	17.4611
(((((((((.(((.(((......)))..))).))...)))	chr9:140481417-140481714(-)$1	1	188	228	12.9095
((((.((...((.((((((....))).))).)).))))))	chr11:65161368-65161635(+)$1	1	118	158	11.9192
(((((.(((.(.(((((((....))).)...))).).)))	chr12:7076420-7076645(-)$1	1	94	134	15.2528
((((((.(.(((((((((......))))))))).))))))	chr2:55461090-55461339(+)$1	1	102	142	14.3180
(((((((((((..(.((((....)))))))))))))))))	chr1:155279675-155279924(+)$1	1	111	151	16.5232
(.((((((((((((..((((...))))....))))).)))	chr19:650205-650453(-)$1	1	187	227	12.0556
.))))((((((((((((......)))))))))))))))))	chr5:27484880-27485114(+)$1	1	192	232	13.3340
..(((...(((((.((((......)))).)).))).))).	chr2:97530952-97531202(-)$1	1	67	107	13.0573
.(((...((((((..(((.....)))..))).)))...))	chr20:62331945-62332199(-)$1	1	185	225	14.8115
((.((.(((((((((...((....)).)))))))))..))	chr2:234197291-234197509(+)$1	1	100	140	13.1900
((((((((.((((((...((....)).)))))).))))))	chr12:125263037-125263281(-)$1	1	95	135	12.9917
..((((((((((((((((......))))))))))))))))	chr10:97386445-97386698(-)$1	1	87	127	16.4879
(((((((((.....(((.........)))....)))))))	chr18:47340452-47340659(+)$1	1	81	121	14.1054
((((...((((...((((.........))))...)))).)	chr4:2906341-2906618(+)$1	1	210	250	11.2466
((((((..(((...(((((....)))))....))).))))	chr7:98479329-98479533(+)$1	1	36	76	14.8521
).((((..(.(((.(((......))).))).)...)))))	chr3:48463106-48463343(-)$1	1	120	160	13.2956
((((..((((.....(((.....)))...)))).))))))	chr12:133358970-133359263(-)$1	1	115	155	12.5363
)))..(((((((((((.(((...))).)))))))))))((	chr2:75105669-75105940(+)$1	1	120	160	15.2699
((.(((((.(....((((......))))...))))))...	chr11:64815104-64815395(-)$1	1	146	186	13.6864
(.(((((.(((.(..(((.........)))..))))))))	chr17:73872759-73873044(-)$1	1	141	181	11.4852

#PSSM
= : 0.15	d : 0.15	i : 0.13	g : 0.11	f : 0.08	[ : 0.05	c : 0.05	b : 0.05	e : 0.03	$ : 0.03	! : 0.03	: : 0.03	# : 0.01	" : 0.01	h : 0.01	] : 0.01	
= : 0.22	d : 0.15	g : 0.11	i : 0.11	f : 0.08	[ : 0.06	: : 0.05	c : 0.05	e : 0.03	$ : 0.03	# : 0.01	" : 0.01	h : 0.01	! : 0.01	
= : 0.25	d : 0.16	g : 0.11	c : 0.10	f : 0.08	i : 0.08	e : 0.08	[ : 0.05	$ : 0.01	" : 0.01	h : 0.01	
= : 0.25	d : 0.11	g : 0.10	e : 0.10	c : 0.10	f : 0.08	i : 0.08	[ : 0.06	b : 0.03	$ : 0.01	h : 0.01	: : 0.01	
= : 0.23	g : 0.11	[ : 0.10	e : 0.08	c : 0.08	f : 0.06	i : 0.06	d : 0.06	b : 0.05	" : 0.03	a : 0.01	$ : 0.01	h : 0.01	! : 0.01	: : 0.01	
= : 0.27	[ : 0.13	g : 0.10	c : 0.06	e : 0.06	d : 0.05	f : 0.05	i : 0.05	! : 0.05	" : 0.05	a : 0.03	b : 0.03	: : 0.01	h : 0.01	
= : 0.25	c : 0.11	! : 0.11	g : 0.10	e : 0.08	[ : 0.06	d : 0.06	i : 0.06	" : 0.05	f : 0.01	# : 0.01	h : 0.01	b : 0.01	
= : 0.28	d : 0.15	c : 0.11	! : 0.10	g : 0.08	i : 0.06	f : 0.03	e : 0.03	[ : 0.03	" : 0.03	# : 0.01	b : 0.01	a : 0.01	
= : 0.28	d : 0.18	c : 0.13	g : 0.10	[ : 0.06	i : 0.06	f : 0.03	b : 0.03	# : 0.01	! : 0.01	e : 0.01	" : 0.01	a : 0.01	
= : 0.23	d : 0.16	[ : 0.10	g : 0.10	c : 0.10	f : 0.05	e : 0.05	b : 0.05	i : 0.05	$ : 0.03	# : 0.01	" : 0.01	a : 0.01	
= : 0.23	c : 0.15	d : 0.11	g : 0.10	a : 0.06	e : 0.05	b : 0.05	$ : 0.05	i : 0.05	" : 0.03	f : 0.03	! : 0.01	[ : 0.01	# : 0.01	
= : 0.16	" : 0.15	c : 0.10	! : 0.10	g : 0.08	[ : 0.06	e : 0.05	$ : 0.05	b : 0.05	i : 0.05	d : 0.05	# : 0.03	f : 0.03	
= : 0.16	" : 0.15	c : 0.13	! : 0.13	g : 0.06	e : 0.05	$ : 0.05	i : 0.05	a : 0.03	# : 0.03	[ : 0.03	b : 0.03	f : 0.03	d : 0.01	
" : 0.15	c : 0.13	= : 0.13	[ : 0.11	! : 0.10	g : 0.08	e : 0.05	$ : 0.05	i : 0.05	# : 0.03	a : 0.03	b : 0.01	d : 0.01	f : 0.01	
c : 0.28	d : 0.11	= : 0.10	g : 0.08	e : 0.06	! : 0.06	[ : 0.05	f : 0.05	i : 0.05	" : 0.03	b : 0.01	# : 0.01	a : 0.01	r : 0.01	$ : 0.01	
c : 0.32	d : 0.13	[ : 0.10	= : 0.10	" : 0.08	g : 0.06	e : 0.06	f : 0.03	a : 0.03	r : 0.01	i : 0.01	! : 0.01	
c : 0.35	d : 0.15	= : 0.08	[ : 0.08	a : 0.05	g : 0.05	" : 0.05	e : 0.05	b : 0.03	f : 0.03	! : 0.01	r : 0.01	i : 0.01	
c : 0.28	o : 0.16	d : 0.15	[ : 0.06	b : 0.05	" : 0.05	e : 0.05	g : 0.03	f : 0.03	= : 0.03	r : 0.03	! : 0.01	i : 0.01	
o : 0.25	c : 0.20	n : 0.10	b : 0.10	r : 0.08	a : 0.05	d : 0.05	e : 0.05	g : 0.03	f : 0.03	m : 0.01	= : 0.01	
o : 0.28	m : 0.20	n : 0.13	c : 0.10	b : 0.08	r : 0.08	g : 0.03	f : 0.03	= : 0.01	d : 0.01	
m : 0.30	o : 0.30	n : 0.15	l : 0.15	r : 0.08	
m : 0.30	o : 0.30	n : 0.15	l : 0.15	r : 0.08	
o : 0.30	m : 0.28	n : 0.15	l : 0.15	r : 0.08	d : 0.01	
c : 0.37	o : 0.13	m : 0.10	= : 0.08	r : 0.06	d : 0.06	b : 0.05	n : 0.05	e : 0.03	g : 0.01	a : 0.01	
c : 0.38	b : 0.13	d : 0.11	= : 0.10	r : 0.06	o : 0.05	e : 0.05	g : 0.01	f : 0.01	] : 0.01	n : 0.01	i : 0.01	
c : 0.40	d : 0.11	= : 0.10	b : 0.08	r : 0.06	e : 0.05	a : 0.03	f : 0.03	2 : 0.01	g : 0.01	] : 0.01	3 : 0.01	o : 0.01	i : 0.01	
] : 0.28	2 : 0.13	= : 0.10	d : 0.10	g : 0.08	c : 0.05	r : 0.05	3 : 0.05	e : 0.05	f : 0.03	4 : 0.03	i : 0.01	
c : 0.16	a : 0.13	= : 0.13	2 : 0.11	d : 0.10	g : 0.08	f : 0.05	4 : 0.05	3 : 0.05	i : 0.05	e : 0.05	
c : 0.22	= : 0.16	] : 0.11	3 : 0.10	g : 0.08	d : 0.06	4 : 0.06	e : 0.05	f : 0.05	i : 0.05	2 : 0.01	
c : 0.22	= : 0.16	d : 0.11	g : 0.10	4 : 0.08	f : 0.06	3 : 0.06	b : 0.05	i : 0.05	e : 0.03	2 : 0.03	
= : 0.20	d : 0.13	g : 0.10	] : 0.08	c : 0.08	f : 0.06	3 : 0.06	b : 0.05	e : 0.05	i : 0.05	4 : 0.05	2 : 0.03	a : 0.01	
= : 0.23	g : 0.13	d : 0.11	4 : 0.08	] : 0.08	e : 0.06	i : 0.06	f : 0.05	b : 0.03	3 : 0.03	c : 0.03	a : 0.03	2 : 0.01	
= : 0.23	g : 0.13	d : 0.11	e : 0.08	c : 0.08	4 : 0.06	i : 0.06	f : 0.05	b : 0.05	3 : 0.05	a : 0.03	2 : 0.01	
= : 0.22	] : 0.13	3 : 0.10	c : 0.10	d : 0.06	g : 0.06	4 : 0.06	i : 0.06	2 : 0.05	e : 0.05	f : 0.03	a : 0.01	b : 0.01	
= : 0.23	c : 0.11	d : 0.10	3 : 0.08	g : 0.06	4 : 0.06	f : 0.06	i : 0.06	e : 0.06	b : 0.05	2 : 0.03	] : 0.01	a : 0.01	
= : 0.20	3 : 0.10	] : 0.10	d : 0.10	i : 0.08	c : 0.08	g : 0.06	f : 0.06	b : 0.05	a : 0.05	e : 0.05	4 : 0.01	G : 0.01	
= : 0.22	d : 0.13	] : 0.11	c : 0.10	g : 0.08	e : 0.08	3 : 0.05	i : 0.05	2 : 0.05	f : 0.05	4 : 0.01	a : 0.01	G : 0.01	
= : 0.23	d : 0.16	g : 0.10	c : 0.10	3 : 0.06	e : 0.06	i : 0.05	] : 0.05	2 : 0.05	f : 0.05	b : 0.01	h : 0.01	G : 0.01	
= : 0.22	d : 0.15	c : 0.10	g : 0.08	] : 0.08	i : 0.06	e : 0.06	f : 0.06	b : 0.05	3 : 0.03	2 : 0.01	: : 0.01	h : 0.01	G : 0.01	
= : 0.22	d : 0.15	c : 0.10	g : 0.08	f : 0.08	i : 0.06	e : 0.06	2 : 0.03	3 : 0.03	] : 0.03	b : 0.03	a : 0.01	: : 0.01	h : 0.01	G : 0.01	H : 0.01	

#score	820.9473581298847
#seq	59
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_UTR_m3_run2.txt

#BEAR
ddddqqqqqqqqdddd2	chr18:19209003-19209278(+)$1	275	19	36	13.9603
ffffqqqqqqqqfffff	chr3:128888890-128889156(-)$1	266	211	228	12.9904
ddddqqqqqqqqdddd:	chr7:100276510-100276822(+)$1	312	1	18	13.3680
eeeeqqqqqqqqeeeee	chr7:54819929-54820189(-)$1	260	158	175	14.2115
ddddqqqqqqqqdddd:	chr8:11696008-11696249(+)$1	241	205	222	13.3680
eeeeqqqqqqqqeeeee	chr7:99690351-99690706(-)$1	355	64	81	14.2115
""bbqqqqqqqqbb444	chr14:50050237-50050494(-)$1	257	139	156	12.1964
eeeeqqqqqqqqeeeee	chr11:75116575-75116818(+)$1	243	100	117	14.2115
ddddqqqqqqqqdddd]	chr11:5274406-5274688(-)$1	282	217	234	14.2197
eeeeqqqqqqqqeeeee	chr19:36149459-36149740(+)$1	281	163	180	14.2115
ffffqqqqqqqqfffff	chr6:33172048-33172289(+)$1	241	47	64	12.9904
ddddqqqqqqqqddddc	chr16:227341-227619(+)$1	278	193	210	14.1138
ddddqqqqqqqqdddd:	chr6:31694791-31695084(-)$1	293	244	261	13.3680
eeeeqqqqqqqqeeeee	chr11:57510234-57510440(+)$1	206	151	168	14.2115
eeeeqqqqqqqqeeeee	chr12:57031939-57032210(-)$1	271	2	19	14.2115
dcccqqqqqqqqccc]d	chr2:55459842-55460064(+)$1	222	7	24	13.3670
ffffqqqqqqqqfffff	chr12:112847290-112847509(-)$1	219	4	21	12.9904
ddddqqqqqqqqdddd3	chr19:18499786-18500049(+)$1	263	15	32	14.1912
eeeeqqqqqqqqeeeee	chr8:101715361-101715584(-)$1	223	11	28	14.2115
ggggqqqqqqqqggggg	chr11:118279750-118279997(+)$1	247	170	187	13.3573
ggggqqqqqqqqggggg	chr4:39460409-39460616(-)$1	207	14	31	13.3573
bcccqqqqqqqqccc]b	chr2:98264436-98264681(+)$1	245	97	114	12.8766
ddddqqqqqqqqdddd]	chr3:128888981-128889204(-)$1	223	77	94	14.2197
ggggqqqqqqqqggggg	chr6:33377461-33377722(+)$1	261	155	172	13.3573
a[bbqqqqqqqqbb]a]	chr10:74035230-74035516(+)$1	286	9	26	12.5332
eeeeqqqqqqqqeeeee	chr12:56510457-56510660(+)$1	203	13	30	14.2115
ddddqqqqqqqqdddd:	chr19:18499666-18499931(+)$1	265	135	152	13.3680
ffffqqqqqqqqfffff	chr3:53259588-53259952(-)$1	364	161	178	12.9904
ddddqqqqqqqqdddd:	chr19:17513668-17513927(-)$1	259	238	255	13.3680
eeeeqqqqqqqqeeeee	chr11:18428636-18428884(+)$1	248	43	60	14.2115
ddddqqqqqqqqddddf	chr4:56461337-56461565(-)$1	228	124	141	14.1058
eeeeqqqqqqqqeeeee	chr7:98992043-98992325(+)$1	282	129	146	14.2115
ddddqqqqqqqqdddd3	chr19:12907694-12907989(-)$1	295	246	263	14.1912
eeeeqqqqqqqqeeeee	chr11:5289504-5289750(-)$1	246	1	18	14.2115
!cccqqqqqqqqcccgg	chr19:46112612-46112935(-)$1	323	143	160	13.4719
f!!aqqqqqqqqa22ff	chr16:1749181-1749427(+)$1	246	10	27	12.4969
dd[aqqqqqqqqadddd	chr12:56510460-56510686(+)$1	226	18	35	13.5521
f[bbqqqqqqqqbb]ff	chr1:24018199-24018420(+)$1	221	107	124	12.5330
ffffqqqqqqqqfffff	chr15:66797024-66797272(-)$1	248	211	228	12.9904
ddddqqqqqqqqdddd:	chr7:75695655-75695895(+)$1	240	30	47	13.3680
ffffqqqqqqqqfffff	chr16:2820994-2821290(+)$1	296	166	183	12.9904
ddddqqqqqqqqdddd]	chr11:60658390-60658661(-)$1	271	156	173	14.2197
ggggqqqqqqqqggggg	chr5:149829162-149829400(-)$1	238	106	123	13.3573
[cccqqqqqqqqcccff	chr10:73576388-73576660(-)$1	272	58	75	13.4248
====qqqqqqqq=====	chr17:4848897-4849130(-)$1	233	152	169	13.3740
ffffqqqqqqqqfffff	chr12:96259679-96260001(+)$1	322	8	25	12.9904
eeeeqqqqqqqqeeeee	chr16:3708026-3708265(-)$1	239	198	215	14.2115
eeeeqqqqqqqqeeeee	chr19:8387055-8387275(+)$1	220	11	28	14.2115
ddddqqqqqqqqdddd:	chr12:56510331-56510544(+)$1	213	188	205	13.3680
ddddqqqqqqqqdddd:	chr19:19010250-19010532(-)$1	282	193	210	13.3680
[cccqqqqqqqqccc]c	chr7:97481363-97481592(-)$1	229	7	24	13.4096
a[bbqqqqqqqqbbacc	chr6:31698372-31698599(-)$1	227	59	76	12.4461
ddddqqqqqqqqdddd3	chr7:75695728-75696006(+)$1	278	24	41	14.1912
ccbbqqqqqqqqbb]cc	chr7:22862286-22862557(-)$1	271	14	31	12.5866
!cccqqqqqqqqccccc	chr2:176042879-176043131(-)$1	252	115	132	13.4447
ccbbqqqqqqqqbb]cc	chr11:5291016-5291268(-)$1	252	114	131	12.5866
eeeeqqqqqqqqeeeee	chr21:33040723-33040989(+)$1	266	53	70	14.2115
eeeeqqqqqqqqeeeee	chr3:197677737-197677950(+)$1	213	13	30	14.2115

#otherMatches

#Seq PSSM
UUGCaggaagaggcaga	chr18:19209003-19209278(+)$1	275	19	36	13.9603
AAGUGUCUAUGAACUUC	chr3:128888890-128889156(-)$1	266	211	228	12.9904
GCCCCCUUCCCCGGGCC	chr7:100276510-100276822(+)$1	312	1	18	13.3680
UACAAAUUUGCCUGUAU	chr7:54819929-54820189(-)$1	260	158	175	14.2115
CUUUAAUCCCUAAAAGA	chr8:11696008-11696249(+)$1	241	205	222	13.3680
CGCCCAGUUCCAGGCGG	chr7:99690351-99690706(-)$1	355	64	81	14.2115
CAUCUACUCAAUGAAAA	chr14:50050237-50050494(-)$1	257	139	156	12.1964
AUUCUGGAGUCUGGAUG	chr11:75116575-75116818(+)$1	243	100	117	14.2115
GCUUUAUUCUGCAAGCA	chr11:5274406-5274688(-)$1	282	217	234	14.2197
AUCCCCACCCCAGGAUC	chr19:36149459-36149740(+)$1	281	163	180	14.2115
GGGUUAGUUGGUAUUCU	chr6:33172048-33172289(+)$1	241	47	64	12.9904
UGAGUUUUUUCCCUCAG	chr16:227341-227619(+)$1	278	193	210	14.1138
CAAUAAAAUAGAAUUGA	chr6:31694791-31695084(-)$1	293	244	261	13.3680
UCAGUCAUGAUCCUGAA	chr11:57510234-57510440(+)$1	206	151	168	14.2115
GGUGAAUAUGACCAUCU	chr12:57031939-57032210(-)$1	271	2	19	14.2115
UGUCUGCACUUCGGCUG	chr2:55459842-55460064(+)$1	222	7	24	13.3670
GGAAAUACUACAUUCCC	chr12:112847290-112847509(-)$1	219	4	21	12.9904
GCCCUGUGGAAUGGGCU	chr19:18499786-18500049(+)$1	263	15	32	14.1912
AUGAAAAGAAACUUGUG	chr8:101715361-101715584(-)$1	223	11	28	14.2115
GUUUUCUCCAUCAGAUA	chr11:118279750-118279997(+)$1	247	170	187	13.3573
GUCGCGCACUCAUGACG	chr4:39460409-39460616(-)$1	207	14	31	13.3573
CCCAUUACAAGCUGGUG	chr2:98264436-98264681(+)$1	245	97	114	12.8766
AACUACAAAAAAAGUUU	chr3:128888981-128889204(-)$1	223	77	94	14.2197
AAAUAAAGAAUAGUUUG	chr6:33377461-33377722(+)$1	261	155	172	13.3573
UGACAGUUAACAGUGGU	chr10:74035230-74035516(+)$1	286	9	26	12.5332
GAUUCCGUGUACAAUCC	chr12:56510457-56510660(+)$1	203	13	30	14.2115
GCCCUGUGGAAUGGGCU	chr19:18499666-18499931(+)$1	265	135	152	13.3680
GCCUCAUCACCAAGGCC	chr3:53259588-53259952(-)$1	364	161	178	12.9904
GGUGAGAGUGGACACCC	chr19:17513668-17513927(-)$1	259	238	255	13.3680
AGGAUGAUGUCUUCCUU	chr11:18428636-18428884(+)$1	248	43	60	14.2115
GUUGUAAAUGUUCAAUU	chr4:56461337-56461565(-)$1	228	124	141	14.1058
AGGCUAAUGGUUGCUUU	chr7:98992043-98992325(+)$1	282	129	146	14.2115
AGGCCUUCUCAUGCCUC	chr19:12907694-12907989(-)$1	295	246	263	14.1912
CAGAAGCUGGUGUCUGC	chr11:5289504-5289750(-)$1	246	1	18	14.2115
UGACAUACAGAAGUCUC	chr19:46112612-46112935(-)$1	323	143	160	13.4719
CUGUGGGGAUGAAAUGG	chr16:1749181-1749427(+)$1	246	10	27	12.4969
GUACAAUCCAUAGACAU	chr12:56510460-56510686(+)$1	226	18	35	13.5521
CUCCAUCAUGGCGGUGA	chr1:24018199-24018420(+)$1	221	107	124	12.5330
GUUCGGAGCAUAGAAUC	chr15:66797024-66797272(-)$1	248	211	228	12.9904
CUCCAUCAAGAAGGGGG	chr7:75695655-75695895(+)$1	240	30	47	13.3680
GCCAGGGAGGCAUGGCC	chr16:2820994-2821290(+)$1	296	166	183	12.9904
GGUCUGAGUGGUGGCCU	chr11:60658390-60658661(-)$1	271	156	173	14.2197
CCGGUGUGGAGUCUGGA	chr5:149829162-149829400(-)$1	238	106	123	13.3573
AGGGUUCUCUGUCCCUG	chr10:73576388-73576660(-)$1	272	58	75	13.4248
UUUUUUCUGAAUAAAAA	chr17:4848897-4849130(-)$1	233	152	169	13.3740
auauaguauucaguauu	chr12:96259679-96260001(+)$1	322	8	25	12.9904
ACCUAAAUUUAAAGGUA	chr16:3708026-3708265(-)$1	239	198	215	14.2115
GUCUACAUACAGAGACU	chr19:8387055-8387275(+)$1	220	11	28	14.2115
ACAGCAAACUAACUGUA	chr12:56510331-56510544(+)$1	213	188	205	13.3680
CAGGGUGUUCCACCUGA	chr19:19010250-19010532(-)$1	282	193	210	13.3680
GCUGUCAAAGCUUAGGU	chr7:97481363-97481592(-)$1	229	7	24	13.4096
CACACUCCAAAAUGGCC	chr6:31698372-31698599(-)$1	227	59	76	12.4461
CCUUAAUUUAUGAAGGC	chr7:75695728-75696006(+)$1	278	24	41	14.1912
GGCGAUGAAUUACGACC	chr7:22862286-22862557(-)$1	271	14	31	12.5866
ACAAAUUACUGCUUGAC	chr2:176042879-176043131(-)$1	252	115	132	13.4447
CUGCAAUCACUAGCAAG	chr11:5291016-5291268(-)$1	252	114	131	12.5866
UUUACAGGUCCAUGAAA	chr21:33040723-33040989(+)$1	266	53	70	14.2115
CGAGGUGGGAAACUUGU	chr3:197677737-197677950(+)$1	213	13	30	14.2115

#DB
((((........)))).	chr18:19209003-19209278(+)$1	1	19	36	13.9603
((((........)))))	chr3:128888890-128889156(-)$1	1	211	228	12.9904
((((........)))).	chr7:100276510-100276822(+)$1	1	1	18	13.3680
((((........)))))	chr7:54819929-54820189(-)$1	1	158	175	14.2115
((((........)))).	chr8:11696008-11696249(+)$1	1	205	222	13.3680
((((........)))))	chr7:99690351-99690706(-)$1	1	64	81	14.2115
..((........))...	chr14:50050237-50050494(-)$1	1	139	156	12.1964
((((........)))))	chr11:75116575-75116818(+)$1	1	100	117	14.2115
((((........)))).	chr11:5274406-5274688(-)$1	1	217	234	14.2197
((((........)))))	chr19:36149459-36149740(+)$1	1	163	180	14.2115
((((........)))))	chr6:33172048-33172289(+)$1	1	47	64	12.9904
((((........)))))	chr16:227341-227619(+)$1	1	193	210	14.1138
((((........)))).	chr6:31694791-31695084(-)$1	1	244	261	13.3680
((((........)))))	chr11:57510234-57510440(+)$1	1	151	168	14.2115
((((........)))))	chr12:57031939-57032210(-)$1	1	2	19	14.2115
((((........))).)	chr2:55459842-55460064(+)$1	1	7	24	13.3670
((((........)))))	chr12:112847290-112847509(-)$1	1	4	21	12.9904
((((........)))).	chr19:18499786-18500049(+)$1	1	15	32	14.1912
((((........)))))	chr8:101715361-101715584(-)$1	1	11	28	14.2115
((((........)))))	chr11:118279750-118279997(+)$1	1	170	187	13.3573
((((........)))))	chr4:39460409-39460616(-)$1	1	14	31	13.3573
((((........))).)	chr2:98264436-98264681(+)$1	1	97	114	12.8766
((((........)))).	chr3:128888981-128889204(-)$1	1	77	94	14.2197
((((........)))))	chr6:33377461-33377722(+)$1	1	155	172	13.3573
(.((........)).).	chr10:74035230-74035516(+)$1	1	9	26	12.5332
((((........)))))	chr12:56510457-56510660(+)$1	1	13	30	14.2115
((((........)))).	chr19:18499666-18499931(+)$1	1	135	152	13.3680
((((........)))))	chr3:53259588-53259952(-)$1	1	161	178	12.9904
((((........)))).	chr19:17513668-17513927(-)$1	1	238	255	13.3680
((((........)))))	chr11:18428636-18428884(+)$1	1	43	60	14.2115
((((........)))))	chr4:56461337-56461565(-)$1	1	124	141	14.1058
((((........)))))	chr7:98992043-98992325(+)$1	1	129	146	14.2115
((((........)))).	chr19:12907694-12907989(-)$1	1	246	263	14.1912
((((........)))))	chr11:5289504-5289750(-)$1	1	1	18	14.2115
.(((........)))))	chr19:46112612-46112935(-)$1	1	143	160	13.4719
(..(........)..))	chr16:1749181-1749427(+)$1	1	10	27	12.4969
((.(........)))))	chr12:56510460-56510686(+)$1	1	18	35	13.5521
(.((........)).))	chr1:24018199-24018420(+)$1	1	107	124	12.5330
((((........)))))	chr15:66797024-66797272(-)$1	1	211	228	12.9904
((((........)))).	chr7:75695655-75695895(+)$1	1	30	47	13.3680
((((........)))))	chr16:2820994-2821290(+)$1	1	166	183	12.9904
((((........)))).	chr11:60658390-60658661(-)$1	1	156	173	14.2197
((((........)))))	chr5:149829162-149829400(-)$1	1	106	123	13.3573
.(((........)))))	chr10:73576388-73576660(-)$1	1	58	75	13.4248
((((........)))))	chr17:4848897-4849130(-)$1	1	152	169	13.3740
((((........)))))	chr12:96259679-96260001(+)$1	1	8	25	12.9904
((((........)))))	chr16:3708026-3708265(-)$1	1	198	215	14.2115
((((........)))))	chr19:8387055-8387275(+)$1	1	11	28	14.2115
((((........)))).	chr12:56510331-56510544(+)$1	1	188	205	13.3680
((((........)))).	chr19:19010250-19010532(-)$1	1	193	210	13.3680
.(((........))).)	chr7:97481363-97481592(-)$1	1	7	24	13.4096
(.((........)))))	chr6:31698372-31698599(-)$1	1	59	76	12.4461
((((........)))).	chr7:75695728-75696006(+)$1	1	24	41	14.1912
((((........)).))	chr7:22862286-22862557(-)$1	1	14	31	12.5866
.(((........)))))	chr2:176042879-176043131(-)$1	1	115	132	13.4447
((((........)).))	chr11:5291016-5291268(-)$1	1	114	131	12.5866
((((........)))))	chr21:33040723-33040989(+)$1	1	53	70	14.2115
((((........)))))	chr3:197677737-197677950(+)$1	1	13	30	14.2115

#PSSM
d : 0.32	e : 0.25	f : 0.15	g : 0.06	a : 0.03	! : 0.03	[ : 0.03	c : 0.03	" : 0.01	b : 0.01	= : 0.01	
d : 0.31	e : 0.25	c : 0.13	f : 0.12	g : 0.06	[ : 0.05	" : 0.01	! : 0.01	= : 0.01	
d : 0.29	e : 0.25	f : 0.12	b : 0.10	c : 0.10	g : 0.06	! : 0.01	[ : 0.01	= : 0.01	
d : 0.29	e : 0.25	f : 0.12	b : 0.10	c : 0.10	g : 0.06	a : 0.03	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.29	e : 0.25	f : 0.12	b : 0.10	c : 0.10	g : 0.06	a : 0.03	= : 0.01	
d : 0.31	e : 0.25	f : 0.12	b : 0.10	c : 0.10	g : 0.06	2 : 0.01	= : 0.01	
d : 0.31	e : 0.25	f : 0.12	c : 0.10	g : 0.06	] : 0.06	4 : 0.01	2 : 0.01	= : 0.01	a : 0.01	
d : 0.31	e : 0.25	f : 0.17	g : 0.08	c : 0.06	] : 0.05	4 : 0.01	a : 0.01	= : 0.01	
e : 0.25	f : 0.18	: : 0.13	c : 0.10	g : 0.08	] : 0.06	3 : 0.05	d : 0.03	2 : 0.01	4 : 0.01	b : 0.01	= : 0.01	

#score	786.1942247521146
#seq	58
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_CDS_m3_run1.txt

#BEAR
""gggggggssssssssssggggggg]	chr6:43039204-43039453(+)$1	249	94	121	10.8414
dddd[ffffffqqqqqqqqffffff22	chr20:60886569-60886812(-)$1	243	170	197	13.1868
d!!ccc[ddddqqqqqqqqdddd22cc	chr2:61413740-61414018(+)$1	278	21	48	15.6067
ccc!!ffffffqqqqqqqqffffffcc	chr12:48370784-48371033(-)$1	249	186	213	14.1367
c[bbccc[cccqqqqqqqqccc]ccc]	chr20:61598693-61598902(+)$1	209	130	157	16.9534
gggccc"""bbqqqqqqqqbb333ccc	chr9:117072836-117073046(+)$1	210	99	126	16.5545
===========qqqqqqqq========	chr6:57033122-57033445(+)$1	323	77	104	16.4425
ddd[dddd[bbqqqqqqqqbbdddddd	chr3:53898922-53899167(+)$1	245	214	241	14.6470
E::dddd[cccqqqqqqqqccc]dddd	chr4:83740160-83740389(-)$1	229	53	80	13.1823
ggggg[cccssssssssssccc]gggg	chr11:77594776-77595007(-)$1	231	105	132	11.6123
iiiiiiiii[aqqqqqqqqaiiiiiii	chr3:49052158-49052392(+)$1	234	32	59	15.9347
ddddbb!!cccqqqqqqqqccc22bb]	chr20:2639064-2639370(-)$1	306	93	120	15.5566
###dddd!!bbqqqqqqqqbb22dddd	chr19:18545757-18546028(-)$1	271	105	132	15.0814
===========qqqqqqqq========	chr6:109765307-109765562(-)$1	255	139	166	16.4425
c[bb"""ddddqqqqqqqqdddd333b	chr16:89816076-89816331(-)$1	255	186	213	15.2779
eee!!ccc[bbqqqqqqqqbb22ccce	chr3:50112534-50112797(+)$1	263	162	189	15.5135
iiiiiiiicccqqqqqqqqccc22iii	chr1:46879016-46879274(+)$1	258	49	76	16.8635
dd!!gggggggqqqqqqqqggggggg2	chr8:145540664-145540923(-)$1	259	14	41	15.3925
ggggggg[cccqqqqqqqqccc]gggg	chr8:144644556-144644793(+)$1	237	147	174	17.1173
dd[a[ccc[bbqqqqqqqqbb]ccc]a	chr20:57288897-57289163(+)$1	266	97	124	15.5203
ffffgggggggqqqqqqqqggggggg]	chr6:31498980-31499213(-)$1	233	186	213	15.2973
ggg!!bbddddqqqqqqqqdddd22bb	chr22:50684311-50684619(-)$1	308	210	237	14.6138
[gggggggwwwwwwwwwwwwwwggggg	chr9:117069955-117070158(+)$1	203	129	156	11.3266
ggg[cccddddqqqqqqqqdddd8888	chr14:24030404-24030626(-)$1	222	101	128	14.1040
""ccc"""cccqqqqqqqqccc333cc	chr7:65557448-65557665(+)$1	217	46	73	17.4102
:eeeee[ddddqqqqqqqqddddeeee	chr17:48629103-48629447(+)$1	344	99	126	13.4062
$$$$dddd!!aqqqqqqqqa22dddd4	chr12:110811927-110812228(-)$1	301	89	116	14.1394
fffff!!ddddqqqqqqqqdddd22ff	chr8:144643444-144643693(+)$1	249	98	125	14.8389
fff[dddd[bbqqqqqqqqbb]ddddf	chr3:184100580-184100825(+)$1	245	146	173	14.8496
hccc[ccccccqqqqqqqqccc]ccc]	chr21:47558322-47558531(-)$1	209	140	167	16.9666
fffff!!ddddqqqqqqqqddddffff	chr3:120357210-120357418(-)$1	208	77	104	14.6834
ccc[ccc[bbqqqqqqqqbb]cccccc	chr1:156352503-156352751(+)$1	248	117	144	13.7287
eeeee"""cccqqqqqqqqccc333ee	chr20:62571242-62571508(-)$1	266	171	198	16.5399
ffff[a[ddddqqqqqqqqdddd22a]	chr19:39224874-39225132(-)$1	258	157	184	15.3222
f!!bb[cccssssssssssccc]bb44	chr12:14923832-14924106(-)$1	274	111	138	10.6256
ffffgggggggqqqqqqqqggggggg]	chr6:31498866-31499074(-)$1	208	47	74	15.2973
[gggggggwwwwwwwwwwwwwwggggg	chr9:117069902-117070130(+)$1	228	182	209	11.3266
ee:dddd[cccqqqqqqqqccc]dddd	chr11:67817028-67817255(+)$1	227	77	104	15.0008
###ddddddddqqqqqqqqdddd]ddd	chr19:39962201-39962469(+)$1	268	181	208	14.8862
g"""ccc[cccqqqqqqqqccc]ccc6	chr1:1322522-1322752(-)$1	230	62	89	17.0168
dddccccccssssssssssccc]ccc]	chr3:49753154-49753377(+)$1	223	137	164	11.2770
cc[bb"""cccqqqqqqqqccc]bb]c	chr1:1431008-1431287(+)$1	279	10	37	16.0497
gggg[bb[cccqqqqqqqqccc]bb33	chr20:33432899-33433262(-)$1	363	53	80	16.3974
gggeeeee[bbqqqqqqqqbb]eeeee	chr16:2137987-2138237(+)$1	250	179	206	14.4224
gggg!!cccssssssssssccc22ggg	chr9:131095651-131095980(+)$1	329	287	314	11.6219
bb[dddd[cccqqqqqqqqcccdddd]	chr16:135514-135863(+)$1	349	165	192	15.8948
[ccc[bb[bbqqqqqqqqbb]bbccc]	chr2:61415232-61415490(-)$1	258	186	213	12.7512
(dddd"""cccqqqqqqqqcccdddd=	chr19:50165051-50165335(-)$1	284	171	198	15.4603
[a[ddddddddqqqqqqqqdddd4444	chr16:2820821-2821059(+)$1	238	96	123	15.4704
ggg[ccc[cccqqqqqqqqccc]ccc]	chr9:116999169-116999383(+)$1	214	21	48	17.6322
a"""dddd[bbqqqqqqqqbbdddd]a	chr1:40768702-40768953(-)$1	251	102	129	15.3006
[bb[ccc!!bbqqqqqqqqbb22ccc]	chr17:38175941-38176199(-)$1	258	160	187	15.9572
hhhhh"""cccqqqqqqqqccc333hh	chr6:41756871-41757175(+)$1	304	190	217	16.1821
ee$$$$$ddddqqqqqqqqddddeeee	chr20:2638833-2639082(+)$1	249	146	173	13.9935

#otherMatches

#Seq PSSM
CCCUAGAUGACCACAAGCCCAUCUGGA	chr6:43039204-43039453(+)$1	249	94	121	10.8414
GGUCCCAGCUGGCCUUCCGCAGCUGCU	chr20:60886569-60886812(-)$1	243	170	197	13.1868
CAUGGUUGCACUGAAUUUUGUGCCUAC	chr2:61413740-61414018(+)$1	278	21	48	15.6067
GGAUAGGCUGGGAGGGCAGCCAGCCUC	chr12:48370784-48371033(-)$1	249	186	213	14.1367
ACCUGAGCUCUACCCAUGAGGACCUCU	chr20:61598693-61598902(+)$1	209	130	157	16.9534
GCAGUACCGCCUGGAAGUUGGACCUGC	chr9:117072836-117073046(+)$1	210	99	126	16.5545
AUUCUAUGUUUUUUAAUGCAGAUGUGG	chr6:57033122-57033445(+)$1	323	77	104	16.4425
GAUUCAUCUGCACAAAUACGUGGUGGU	chr3:53898922-53899167(+)$1	245	214	241	14.6470
GAUUGACCAUGCAUACCCACAUAGUUA	chr4:83740160-83740389(-)$1	229	53	80	13.1823
UAUCUCUCCCACACCGCUUGGACAGGU	chr11:77594776-77595007(-)$1	231	105	132	11.6123
CUGUCACAUAGCCCUCACACAUGUGGC	chr3:49052158-49052392(+)$1	234	32	59	15.9347
CCUAGGUUGUCCUUGGGCCGGCUUCCU	chr20:2639064-2639370(-)$1	306	93	120	15.5566
UGCGUGGGGCUCCCGCCACAGAACCAC	chr19:18545757-18546028(-)$1	271	105	132	15.0814
CUGGCCUUGGGGACAGGGGCCCAGGGC	chr6:109765307-109765562(-)$1	255	139	166	16.4425
UACAAACGGUAACACCUACUACCACCU	chr16:89816076-89816331(-)$1	255	186	213	15.2779
GGCUACUGGCUGGAGGAAAGGGACAGG	chr3:50112534-50112797(+)$1	263	162	189	15.5135
GGGUGGGGAGUCCUGCCUUGCUAACCC	chr1:46879016-46879274(+)$1	258	49	76	16.8635
CGAGUCUGUCACCUACUUCUGGCAGAA	chr8:145540664-145540923(-)$1	259	14	41	15.3925
GGUUCGGGCUGCAGGAGGAUGGGCUGA	chr8:144644556-144644793(+)$1	237	147	174	17.1173
ACGCCGCGGUGCUCACCAACAGCGCUG	chr20:57288897-57289163(+)$1	266	97	124	15.5203
GACAGUUGAGAGAAGGGAAUCUCAACA	chr6:31498980-31499213(-)$1	233	186	213	15.2973
CCCACGCUGCACUCCUGGCUGCAAUGC	chr22:50684311-50684619(-)$1	308	210	237	14.6138
CCAGGCUGUCUGCCUCUAUCCCCAGCC	chr9:117069955-117070158(+)$1	203	129	156	11.3266
CCUGUGUACCUCCACCCCCAGGUAAGC	chr14:24030404-24030626(-)$1	222	101	128	14.1040
AGGGCAUGGAGAAACCUGCCUCAGCGC	chr7:65557448-65557665(+)$1	217	46	73	17.4102
ugauggcaccugcccaagaggguucau	chr17:48629103-48629447(+)$1	344	99	126	13.4062
GUUUGGACCCCAAUGACCAGAAGUCUC	chr12:110811927-110812228(-)$1	301	89	116	14.1394
UCCUUCUCUUCCCGGAUAAGAAGCAGA	chr8:144643444-144643693(+)$1	249	98	125	14.8389
GUGAGUGGGGAUCUGGCUCUCGCUGCC	chr3:184100580-184100825(+)$1	245	146	173	14.8496
UGCCGCAAAGCAGGAAGCAGCUGUUGG	chr21:47558322-47558531(-)$1	209	140	167	16.9666
GGGGUUGCUGAUAAGACCUUCAGGCCU	chr3:120357210-120357418(-)$1	208	77	104	14.6834
GUCACACUGAUGUUUGCCUCUGUGGGC	chr1:156352503-156352751(+)$1	248	117	144	13.7287
ACGGGUUAGCUGCCCAGUGAGCCAUCC	chr20:62571242-62571508(-)$1	266	171	198	16.5399
UGCUGCAGUGUUUCGGGGUACAUGGGG	chr19:39224874-39225132(-)$1	258	157	184	15.3222
CAAGGGGCUGGGUAAGGGAGGCGCCAA	chr12:14923832-14924106(-)$1	274	111	138	10.6256
GACAGUUGAGAGAAGGGAAUCUCAACA	chr6:31498866-31499074(-)$1	208	47	74	15.2973
CCAGGCUGUCUGCCUCUAUCCCCAGCC	chr9:117069902-117070130(+)$1	228	182	209	11.3266
UGACUCUCGCCCUCUCCCUGGCAGGAG	chr11:67817028-67817255(+)$1	227	77	104	15.0008
UGGCAGGACCCUGUGCGUUGGGUACCU	chr19:39962201-39962469(+)$1	268	181	208	14.8862
GAGAGCGCUCGAGGUCGUAUGAACGCA	chr1:1322522-1322752(-)$1	230	62	89	17.0168
UGGACAGCCGGCAGCUCAAGGUAUGUG	chr3:49753154-49753377(+)$1	223	137	164	11.2770
GCGAGACCCUCACCUCAUGGAGCCUGG	chr1:1431008-1431287(+)$1	279	10	37	16.0497
CAGCCGAAGGACCAACAACUUCAUCAU	chr20:33432899-33433262(-)$1	363	53	80	16.3974
GCUGGUGGGACAGGCCCAGGUGCCACC	chr16:2137987-2138237(+)$1	250	179	206	14.4224
GGGGCCUGGCCUACCUCCCCCAUCCCC	chr9:131095651-131095980(+)$1	329	287	314	11.6219
AGGGGAGUGGGCCCGGAAACCCCUCCG	chr16:135514-135863(+)$1	349	165	192	15.8948
GGACCAUUGAAUCUACAAUCCAUGUCG	chr2:61415232-61415490(-)$1	258	186	213	12.7512
GCCUGCACAGUGGUUAACAACUCAGGA	chr19:50165051-50165335(-)$1	284	171	198	15.4603
GUGUCCCUUCUUCCCCAGCAGAGCCGU	chr16:2820821-2821059(+)$1	238	96	123	15.4704
GGACUGGGCGGCUGUUCACCUGGCCAU	chr9:116999169-116999383(+)$1	214	21	48	17.6322
GAUGCCACUGACCAGCACAUCGUGGAU	chr1:40768702-40768953(-)$1	251	102	129	15.3006
CCGUGAGUACCACCUUCCCGGCUCUCC	chr17:38175941-38176199(-)$1	258	160	187	15.9572
UGUAGCCAAGUAGGUAAGCACUGAACU	chr6:41756871-41757175(+)$1	304	190	217	16.1821
AGCCCAAGGUGACAUUUCCCACCCUGU	chr20:2638833-2639082(+)$1	249	146	173	13.9935

#DB
..(((((((..........))))))).	chr6:43039204-43039453(+)$1	1	94	121	10.8414
((((.((((((........))))))..	chr20:60886569-60886812(-)$1	1	170	197	13.1868
(..(((.((((........))))..))	chr2:61413740-61414018(+)$1	1	21	48	15.6067
(((..((((((........))))))))	chr12:48370784-48371033(-)$1	1	186	213	14.1367
(.(((((.(((........))).))).	chr20:61598693-61598902(+)$1	1	130	157	16.9534
((((((...((........))...)))	chr9:117072836-117073046(+)$1	1	99	126	16.5545
(((((((((((........))))))))	chr6:57033122-57033445(+)$1	1	77	104	16.4425
(((.((((.((........))))))))	chr3:53898922-53899167(+)$1	1	214	241	14.6470
(..((((.(((........))).))))	chr4:83740160-83740389(-)$1	1	53	80	13.1823
(((((.(((..........))).))))	chr11:77594776-77595007(-)$1	1	105	132	11.6123
(((((((((.(........))))))))	chr3:49052158-49052392(+)$1	1	32	59	15.9347
((((((..(((........)))..)).	chr20:2639064-2639370(-)$1	1	93	120	15.5566
...((((..((........))..))))	chr19:18545757-18546028(-)$1	1	105	132	15.0814
(((((((((((........))))))))	chr6:109765307-109765562(-)$1	1	139	166	16.4425
(.((...((((........))))...)	chr16:89816076-89816331(-)$1	1	186	213	15.2779
(((..(((.((........))..))))	chr3:50112534-50112797(+)$1	1	162	189	15.5135
(((((((((((........)))..)))	chr1:46879016-46879274(+)$1	1	49	76	16.8635
((..(((((((........))))))).	chr8:145540664-145540923(-)$1	1	14	41	15.3925
(((((((.(((........))).))))	chr8:144644556-144644793(+)$1	1	147	174	17.1173
((.(.(((.((........)).))).)	chr20:57288897-57289163(+)$1	1	97	124	15.5203
(((((((((((........))))))).	chr6:31498980-31499213(-)$1	1	186	213	15.2973
(((..((((((........))))..))	chr22:50684311-50684619(-)$1	1	210	237	14.6138
.(((((((..............)))))	chr9:117069955-117070158(+)$1	1	129	156	11.3266
(((.(((((((........))))....	chr14:24030404-24030626(-)$1	1	101	128	14.1040
..(((...(((........)))...))	chr7:65557448-65557665(+)$1	1	46	73	17.4102
.(((((.((((........))))))))	chr17:48629103-48629447(+)$1	1	99	126	13.4062
....((((..(........)..)))).	chr12:110811927-110812228(-)$1	1	89	116	14.1394
(((((..((((........))))..))	chr8:144643444-144643693(+)$1	1	98	125	14.8389
(((.((((.((........)).)))))	chr3:184100580-184100825(+)$1	1	146	173	14.8496
)(((.((((((........))).))).	chr21:47558322-47558531(-)$1	1	140	167	16.9666
(((((..((((........))))))))	chr3:120357210-120357418(-)$1	1	77	104	14.6834
(((.(((.((........)).))))))	chr1:156352503-156352751(+)$1	1	117	144	13.7287
(((((...(((........)))...))	chr20:62571242-62571508(-)$1	1	171	198	16.5399
((((.(.((((........))))..).	chr19:39224874-39225132(-)$1	1	157	184	15.3222
(..((.(((..........))).))..	chr12:14923832-14924106(-)$1	1	111	138	10.6256
(((((((((((........))))))).	chr6:31498866-31499074(-)$1	1	47	74	15.2973
.(((((((..............)))))	chr9:117069902-117070130(+)$1	1	182	209	11.3266
)).((((.(((........))).))))	chr11:67817028-67817255(+)$1	1	77	104	15.0008
...((((((((........)))).)))	chr19:39962201-39962469(+)$1	1	181	208	14.8862
(...(((.(((........))).))).	chr1:1322522-1322752(-)$1	1	62	89	17.0168
(((((((((..........))).))).	chr3:49753154-49753377(+)$1	1	137	164	11.2770
((.((...(((........))).)).)	chr1:1431008-1431287(+)$1	1	10	37	16.0497
((((.((.(((........))).))..	chr20:33432899-33433262(-)$1	1	53	80	16.3974
((((((((.((........)).)))))	chr16:2137987-2138237(+)$1	1	179	206	14.4224
((((..(((..........)))..)))	chr9:131095651-131095980(+)$1	1	287	314	11.6219
((.((((.(((........))))))).	chr16:135514-135863(+)$1	1	165	192	15.8948
.(((.((.((........)).))))).	chr2:61415232-61415490(-)$1	1	186	213	12.7512
.((((...(((........))))))))	chr19:50165051-50165335(-)$1	1	171	198	15.4603
.(.((((((((........))))....	chr16:2820821-2821059(+)$1	1	96	123	15.4704
(((.(((.(((........))).))).	chr9:116999169-116999383(+)$1	1	21	48	17.6322
(...((((.((........)))))).)	chr1:40768702-40768953(-)$1	1	102	129	15.3006
.((.(((..((........))..))).	chr17:38175941-38176199(-)$1	1	160	187	15.9572
(((((...(((........)))...))	chr6:41756871-41757175(+)$1	1	190	217	16.1821
((.....((((........))))))))	chr20:2638833-2639082(+)$1	1	146	173	13.9935

#PSSM
g : 0.18	d : 0.12	f : 0.12	c : 0.09	[ : 0.09	e : 0.07	" : 0.03	= : 0.03	i : 0.03	# : 0.03	h : 0.03	E : 0.01	: : 0.01	$ : 0.01	b : 0.01	( : 0.01	a : 0.01	
g : 0.20	d : 0.12	f : 0.11	c : 0.09	e : 0.09	" : 0.07	! : 0.03	[ : 0.03	= : 0.03	i : 0.03	# : 0.03	b : 0.03	: : 0.01	$ : 0.01	a : 0.01	h : 0.01	
g : 0.22	f : 0.11	d : 0.09	c : 0.09	[ : 0.07	! : 0.05	b : 0.05	e : 0.05	= : 0.03	: : 0.03	i : 0.03	# : 0.03	$ : 0.03	" : 0.03	h : 0.01	
d : 0.16	g : 0.12	c : 0.11	[ : 0.11	f : 0.09	! : 0.07	b : 0.07	e : 0.05	= : 0.03	i : 0.03	$ : 0.03	" : 0.03	a : 0.01	h : 0.01	
d : 0.20	c : 0.18	g : 0.14	[ : 0.11	! : 0.07	b : 0.05	e : 0.05	= : 0.03	i : 0.03	f : 0.03	" : 0.01	h : 0.01	$ : 0.01	
c : 0.22	d : 0.18	g : 0.12	" : 0.11	b : 0.07	! : 0.05	f : 0.03	= : 0.03	[ : 0.03	i : 0.03	e : 0.03	a : 0.01	$ : 0.01	
c : 0.24	d : 0.18	g : 0.12	" : 0.12	[ : 0.05	! : 0.05	b : 0.05	f : 0.03	= : 0.03	i : 0.03	e : 0.01	$ : 0.01	
d : 0.27	[ : 0.18	c : 0.12	g : 0.11	" : 0.11	! : 0.05	f : 0.03	= : 0.03	i : 0.03	e : 0.01	
c : 0.37	d : 0.20	[ : 0.11	g : 0.07	! : 0.05	f : 0.03	= : 0.03	w : 0.03	b : 0.03	" : 0.01	i : 0.01	
c : 0.29	d : 0.20	b : 0.20	s : 0.09	g : 0.05	f : 0.03	= : 0.03	w : 0.03	[ : 0.01	! : 0.01	
c : 0.29	d : 0.20	b : 0.16	s : 0.09	g : 0.05	f : 0.03	= : 0.03	a : 0.03	w : 0.03	q : 0.03	
q : 0.87	s : 0.09	w : 0.03	
q : 0.87	s : 0.09	w : 0.03	
q : 0.87	s : 0.09	w : 0.03	
q : 0.87	s : 0.09	w : 0.03	
q : 0.87	s : 0.09	w : 0.03	
q : 0.87	s : 0.09	w : 0.03	
q : 0.87	s : 0.09	w : 0.03	
q : 0.83	s : 0.09	w : 0.03	b : 0.03	
c : 0.37	d : 0.20	b : 0.20	g : 0.07	f : 0.03	= : 0.03	a : 0.03	w : 0.03	
c : 0.37	d : 0.20	b : 0.16	g : 0.07	f : 0.03	= : 0.03	w : 0.03	] : 0.03	i : 0.01	2 : 0.01	
c : 0.38	d : 0.24	g : 0.07	2 : 0.07	] : 0.05	f : 0.03	= : 0.03	w : 0.03	3 : 0.01	i : 0.01	b : 0.01	
d : 0.31	] : 0.22	g : 0.11	2 : 0.11	3 : 0.07	f : 0.03	= : 0.03	c : 0.03	i : 0.01	e : 0.01	b : 0.01	
c : 0.18	d : 0.16	g : 0.14	2 : 0.12	3 : 0.09	f : 0.05	e : 0.05	b : 0.05	= : 0.03	i : 0.01	8 : 0.01	] : 0.01	4 : 0.01	
c : 0.20	d : 0.18	g : 0.16	2 : 0.07	b : 0.07	3 : 0.07	f : 0.05	e : 0.05	= : 0.03	i : 0.03	8 : 0.01	4 : 0.01	
c : 0.24	g : 0.16	d : 0.16	e : 0.07	] : 0.05	= : 0.03	i : 0.03	b : 0.03	3 : 0.03	f : 0.03	4 : 0.03	2 : 0.01	8 : 0.01	a : 0.01	h : 0.01	
] : 0.22	c : 0.11	d : 0.09	g : 0.09	e : 0.09	= : 0.05	4 : 0.05	f : 0.05	2 : 0.03	i : 0.03	b : 0.03	a : 0.03	8 : 0.01	6 : 0.01	3 : 0.01	h : 0.01	

#score	801.6572593095493
#seq	54
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_CDS_m1_run1.txt

#BEAR
cc[ccctttttttttttccc]cc	chr1:184663227-184663497(-)$1	270	158	181	22.2037
b[ddddtttttttttttddddbb	chr1:61892072-61892332(+)$1	260	42	65	21.7715
=====vvvvvvvvvvvvv=====	chr3:56707603-56707844(-)$1	241	44	67	23.2456
eeeeevvvvvvvvvvvvveeeee	chr12:100685324-100685539(+)$1	215	121	144	24.0713
g[cccvvvvvvvvvvvvvcccgg	chr13:31232078-31232332(+)$1	254	83	106	23.2641
ddd[bbtttttttttttbb22dd	chr5:137902689-137902950(-)$1	261	201	224	20.8289
ggggggtttttttttttgggggg	chr22:18080866-18081154(-)$1	288	115	138	22.0184
:ddddtttttttttttddddfff	chr14:93305609-93305847(+)$1	238	83	106	21.0596
c[ddddtttttttttttdddd33	chr6:170626392-170626683(+)$1	291	70	93	22.4057
ddd[attttttttttta]dddd:	chr1:93575794-93576056(+)$1	262	174	197	21.7495
eeeeeuuuuuuuuuuuueeeee2	chr18:34378311-34378543(-)$1	232	94	117	23.6362
fffbbuuuuuuuuuuuubb]fff	chr2:47387782-47388043(-)$1	261	222	245	21.7885
gg[bbtttttttttttbb]gggg	chr3:44794664-44794964(-)$1	300	143	166	21.3916
!eeeeettttttttttteeeee6	chr15:32929895-32930181(+)$1	286	169	192	22.7833
ffffwwwwwwwwwwwwwwfffff	chr2:24296880-24297164(-)$1	284	132	155	20.8393
fffffftttttttttttffffff	chr20:52185557-52185835(-)$1	278	197	220	21.3940
ddd[bbtttttttttttbbdddd	chr6:42985980-42986209(+)$1	229	14	37	21.3688
eeeeeuuuuuuuuuuuueeeee:	chr10:70513520-70513799(+)$1	279	213	236	23.0891
eeeeevvvvvvvvvvvvveeeee	chr6:133110826-133111084(-)$1	258	113	136	24.0713
fffffftttttttttttffffff	chr2:101885634-101885889(+)$1	255	150	173	21.3940
hhhhhwwwwwwwwwwwwwwhhhh	chr2:162087831-162088060(+)$1	229	184	207	19.5137
eeeeeuuuuuuuuuuuueeeee:	chr5:65339901-65340187(+)$1	286	183	206	23.0891
ffffbbtttttttttttbb]fff	chr6:161536070-161536311(+)$1	241	133	156	21.1423
a[ddddtttttttttttdddda:	chr5:71516663-71516940(-)$1	277	254	277	21.6375
bddddtttttttttttdddd]bb	chr7:155094415-155094654(+)$1	239	81	104	21.5643
"dddduuuuuuuuuuuudddd33	chr14:23612187-23612438(-)$1	251	159	182	23.2037
!eeeeettttttttttteeeee2	chr8:124267804-124268107(-)$1	303	99	122	22.9900
"ddddvvvvvvvvvvvvvdddd>	chr2:109392097-109392394(+)$1	297	159	182	23.4255
fffffftttttttttttffffff	chr1:78162854-78163121(-)$1	267	235	258	21.3940
hhhhhvvvvvvvvvvvvvhhhhh	chrX:123182782-123183021(+)$1	239	108	131	21.3945
eeeeevvvvvvvvvvvvveeeee	chr1:231509624-231509847(-)$1	223	140	163	24.0713
ddddwwwwwwwwwwwwwwdddd:	chr6:155141300-155141568(+)$1	268	88	111	20.8211
fffffvvvvvvvvvvvvvfffff	chr14:50584967-50585215(-)$1	248	39	62	22.5763
bddddtttttttttttdddd]bb	chr7:155094401-155094615(+)$1	214	95	118	21.5643
!ddddvvvvvvvvvvvvvdddd3	chr2:47388760-47389015(-)$1	255	179	202	23.6154
""cccuuuuuuuuuuuuccc333	chr16:18852923-18853196(-)$1	273	53	76	22.8592
cccbbtttttttttttbb]ccc:	chr8:126033925-126034194(+)$1	269	171	194	20.4963
cccwwwwwwwwwwwwwwccc]ee	chr6:155618091-155618344(-)$1	253	34	57	20.7267
dd[bbuuuuuuuuuuuubb]ddd	chrX:123183982-123184246(+)$1	264	198	221	21.8104
eeeeevvvvvvvvvvvvveeeee	chr1:186283718-186283959(-)$1	241	83	106	24.0713
gggggvvvvvvvvvvvvvggggg	chr5:102509461-102509663(+)$1	202	88	111	23.3162
ddddwwwwwwwwwwwwwwdddd]	chr3:185639791-185640015(-)$1	224	23	46	21.5163
bddddtttttttttttdddd]bb	chr7:155094357-155094601(+)$1	244	139	162	21.5643
eeeeettttttttttteeeeeee	chr15:91358397-91358681(+)$1	284	11	34	22.6986
eeeeeuuuuuuuuuuuueeeee:	chr11:46837701-46838014(-)$1	313	203	226	23.0891
$$cccvvvvvvvvvvvvvccc88	chr7:149171997-149172245(-)$1	248	88	111	21.8345
eeeeeuuuuuuuuuuuueeeeef	chr2:70105998-70106266(+)$1	268	215	238	23.6709
eeeeevvvvvvvvvvvvveeeee	chrX:48117154-48117395(+)$1	241	62	85	24.0713
eeeewwwwwwwwwwwwwweeeee	chr2:54044934-54045168(+)$1	234	67	90	22.1719
eeeeeuuuuuuuuuuuueeeee:	chr2:111395409-111395659(-)$1	250	28	51	23.0891
ggggggtttttttttttgggggg	chr9:33113351-33113635(-)$1	284	140	163	22.0184
"ddddtttttttttttdddd]cc	chr1:155031081-155031346(+)$1	265	25	48	22.1421
ddddduuuuuuuuuuuudddd:I	chr9:90344387-90344658(+)$1	271	229	252	20.8501
cc[bbtttttttttttbb]ccc6	chr2:69658965-69659211(-)$1	246	85	108	20.8364
!dddduuuuuuuuuuuuddddee	chr16:56717851-56718112(+)$1	261	39	62	23.2908
gggggvvvvvvvvvvvvvggggg	chr6:18255864-18256178(-)$1	314	219	242	23.3162
gggwwwwwwwwwwwwwwgggggg	chr10:43882987-43883277(-)$1	290	26	49	20.6949
##bbvvvvvvvvvvvvvbb22gg	chr1:165876952-165877282(+)$1	330	50	73	21.1938
""ccctttttttttttccc333b	chr3:150460267-150460535(-)$1	268	112	135	21.7103
eeeeevvvvvvvvvvvvveeeee	chr6:33243739-33243943(+)$1	204	147	170	24.0713
:eeeeettttttttttteeeee:	chr14:97014078-97014338(+)$1	260	174	197	21.4102
eeeeauuuuuuuuuuuua]eeee	chr8:124340361-124340664(-)$1	303	7	30	23.7200
:eeeeettttttttttteeeee:	chr9:114695134-114695411(+)$1	277	33	56	21.4102
ffffattttttttttta]fffff	chr1:46775784-46776020(+)$1	236	134	157	21.8444
gggggvvvvvvvvvvvvvggggg	chr3:186507601-186507897(-)$1	296	13	36	23.3162
!!ddddtttttttttttdddd22	chr17:7150053-7150268(-)$1	215	32	55	22.1112
eeeeevvvvvvvvvvvvveeeee	chr20:61537065-61537340(-)$1	275	50	73	24.0713
eeeeyyyyyyyyyyyyyyyyeee	chr5:170833301-170833549(+)$1	248	116	139	19.7597

#otherMatches

#Seq PSSM
AGCUUCAAGAACAAUCAGAAACU	chr1:184663227-184663497(-)$1	270	158	181	22.2037
CAUGUGUCCCUUCCCUUCACAGC	chr1:61892072-61892332(+)$1	260	42	65	21.7715
AGAUGGAGUAAUGUUAAACAUUU	chr3:56707603-56707844(-)$1	241	44	67	23.2456
UUUACAAAAACUUACAUAGUAGA	chr12:100685324-100685539(+)$1	215	121	144	24.0713
GUGGACAUAAGUUUUCCAUCCCA	chr13:31232078-31232332(+)$1	254	83	106	23.2641
GGUGGGGAAGACUUUGACCAGGC	chr5:137902689-137902950(-)$1	261	201	224	20.8289
GCAAUUCCUAUGUACAAAAUUGC	chr22:18080866-18081154(-)$1	288	115	138	22.0184
UGCUUUUUCUUUCUCUAGGCUUU	chr14:93305609-93305847(+)$1	238	83	106	21.0596
UUCCCGGAGUUCAGUUAUGGGUG	chr6:170626392-170626683(+)$1	291	70	93	22.4057
UUGGCACUAUCAAAAAGGCAAGU	chr1:93575794-93576056(+)$1	262	174	197	21.7495
AUGCCUUCACCAGCUAUGGCAUU	chr18:34378311-34378543(-)$1	232	94	117	23.6362
UGUCAAAAAAAUAUGCAUGUAUA	chr2:47387782-47388043(-)$1	261	222	245	21.7885
UUGAAUUUAGUCUACUUUGAAAG	chr3:44794664-44794964(-)$1	300	143	166	21.3916
GUCAUUAAUGUAAAUAAAGUGAG	chr15:32929895-32930181(+)$1	286	169	192	22.7833
GUAUAUAAGAAAUUUGCCAUACA	chr2:24296880-24297164(-)$1	284	132	155	20.8393
UUUGUACCAAAUAGCAAUACAAA	chr20:52185557-52185835(-)$1	278	197	220	21.3940
UGAAGCAAUGAUAGGAAGCUCAG	chr6:42985980-42986209(+)$1	229	14	37	21.3688
AUUACUGCAAUUUUUAUGUAAUG	chr10:70513520-70513799(+)$1	279	213	236	23.0891
ACAUAUUGGAGCAAAAUUUAUGU	chr6:133110826-133111084(-)$1	258	113	136	24.0713
CAGUAGGAUACGAGAAGCUGCUG	chr2:101885634-101885889(+)$1	255	150	173	21.3940
UUCCCUCACUCGAUUCCCCGGGA	chr2:162087831-162088060(+)$1	229	184	207	19.5137
GAUUUGAAACCACAUGAAGAUCA	chr5:65339901-65340187(+)$1	286	183	206	23.0891
GGAUGGGACAUAAGCCACCAAUC	chr6:161536070-161536311(+)$1	241	133	156	21.1423
GUGCCAGGACUCAGCAGUGGCCU	chr5:71516663-71516940(-)$1	277	254	277	21.6375
CCUUGUAUAUUUUUCUCAGGAGG	chr7:155094415-155094654(+)$1	239	81	104	21.5643
CGCAGGAAAAACAGGUACUGCCC	chr14:23612187-23612438(-)$1	251	159	182	23.2037
AUCAGCAAAAUAAAAAAGUUGAA	chr8:124267804-124268107(-)$1	303	99	122	22.9900
CCUUCUUUCUGUAAAUCUGAAGA	chr2:109392097-109392394(+)$1	297	159	182	23.4255
CCCAUUUAUUUCUUCUUAGUGGG	chr1:78162854-78163121(-)$1	267	235	258	21.3940
AAUGCAAUAUUUAAAGGAGUGUU	chrX:123182782-123183021(+)$1	239	108	131	21.3945
CAUUUAUUUUUUUCUUACAGGUG	chr1:231509624-231509847(-)$1	223	140	163	24.0713
CCAUGGGAAAAAGUUAAAGUGGA	chr6:155141300-155141568(+)$1	268	88	111	20.8211
GCAGAAUUCAAGCCCUCAUCUGC	chr14:50584967-50585215(-)$1	248	39	62	22.5763
CCUUGUAUAUUUUUCUCAGGAGG	chr7:155094401-155094615(+)$1	214	95	118	21.5643
UUCUUCACUUUGAUUUUUAAGAU	chr2:47388760-47389015(-)$1	255	179	202	23.6154
CUAGCUAUUUUAAUUUUGUUUUC	chr16:18852923-18853196(-)$1	273	53	76	22.8592
AGCCCUUCUCAGUAGUGGUGCUG	chr8:126033925-126034194(+)$1	269	171	194	20.4963
UACUCGUCACUGAAAUUGUAUUC	chr6:155618091-155618344(-)$1	253	34	57	20.7267
GCUUCUUUCUACACAUCGGCGUG	chrX:123183982-123184246(+)$1	264	198	221	21.8104
UAUCUUAAUGUUUUUCUUAGAUA	chr1:186283718-186283959(-)$1	241	83	106	24.0713
UUCUAAUUUUAGGUAUUCUAGAG	chr5:102509461-102509663(+)$1	202	88	111	23.3162
GUGGGAUCUUACUCAUAGCCACA	chr3:185639791-185640015(-)$1	224	23	46	21.5163
CCUUGUAUAUUUUUCUCAGGAGG	chr7:155094357-155094601(+)$1	244	139	162	21.5643
CUUCUCAAGCGACAUCAGGAGCC	chr15:91358397-91358681(+)$1	284	11	34	22.6986
CUUGGACAAUAAGAAUCCCAAGA	chr11:46837701-46838014(-)$1	313	203	226	23.0891
CAAGGCCAUUCAACGAACCCUGU	chr7:149171997-149172245(-)$1	248	88	111	21.8345
GGCCAGCUUUAAUUUAAUGGCCC	chr2:70105998-70106266(+)$1	268	215	238	23.6709
GAGUGGAAAAAGAUGAAAUACUC	chrX:48117154-48117395(+)$1	241	62	85	24.0713
CAACUUUUUAAUGGCUUUGUUGU	chr2:54044934-54045168(+)$1	234	67	90	22.1719
AGUAUUUCAACAACACUAUACUA	chr2:111395409-111395659(-)$1	250	28	51	23.0891
CAUUGUAUACCCAAAUCACAGUG	chr9:33113351-33113635(-)$1	284	140	163	22.0184
uggccucaaccuuauuggccucc	chr1:155031081-155031346(+)$1	265	25	48	22.1421
GCAGGUCAUGAGUCCUUCCUGUU	chr9:90344387-90344658(+)$1	271	229	252	20.8501
UGUUGAAGAAUCCAUACACCAUU	chr2:69658965-69659211(-)$1	246	85	108	20.8364
UGGGCUGUGCCAAGUGUGCCCAG	chr16:56717851-56718112(+)$1	261	39	62	23.2908
GAGGAUCAAUUUUUAUUUUUUUC	chr6:18255864-18256178(-)$1	314	219	242	23.3162
CAGAACUUCCUCUCUGACUGCAC	chr10:43882987-43883277(-)$1	290	26	49	20.6949
CGGCUACACCCCUUCACGCAAGA	chr1:165876952-165877282(+)$1	330	50	73	21.1938
AUGUGAAUACCGUCCCUACUCCU	chr3:150460267-150460535(-)$1	268	112	135	21.7103
UCCUAACAGAAUUGGGCAUAGGA	chr6:33243739-33243943(+)$1	204	147	170	24.0713
AAGGUAAAUUUAGAAAGUACUUA	chr14:97014078-97014338(+)$1	260	174	197	21.4102
AGACCGGAAACACAGGAGAGUCU	chr8:124340361-124340664(-)$1	303	7	30	23.7200
UGACAAUAUACAUUUUUUUGUCU	chr9:114695134-114695411(+)$1	277	33	56	21.4102
CUCUCGAUCACAUACAGAAGAGG	chr1:46775784-46776020(+)$1	236	134	157	21.8444
AGGAUGCUAAUUUCUUAAAUUUU	chr3:186507601-186507897(-)$1	296	13	36	23.3162
UAGGCCUGGGUUGUGGUGGUCAU	chr17:7150053-7150268(-)$1	215	32	55	22.1112
GCAGUAAAGCCAGAAAAGACUGC	chr20:61537065-61537340(-)$1	275	50	73	24.0713
GGGCACUACAUGUAAAUUAAGCC	chr5:170833301-170833549(+)$1	248	116	139	19.7597

#DB
((.(((...........))).))	chr1:184663227-184663497(-)$1	1	158	181	22.2037
(.((((...........))))))	chr1:61892072-61892332(+)$1	1	42	65	21.7715
(((((.............)))))	chr3:56707603-56707844(-)$1	1	44	67	23.2456
(((((.............)))))	chr12:100685324-100685539(+)$1	1	121	144	24.0713
(.(((.............)))))	chr13:31232078-31232332(+)$1	1	83	106	23.2641
(((.((...........))..))	chr5:137902689-137902950(-)$1	1	201	224	20.8289
((((((...........))))))	chr22:18080866-18081154(-)$1	1	115	138	22.0184
.((((...........))))(((	chr14:93305609-93305847(+)$1	1	83	106	21.0596
(.((((...........))))..	chr6:170626392-170626683(+)$1	1	70	93	22.4057
(((.(...........).)))).	chr1:93575794-93576056(+)$1	1	174	197	21.7495
(((((............))))).	chr18:34378311-34378543(-)$1	1	94	117	23.6362
(((((............)).)))	chr2:47387782-47388043(-)$1	1	222	245	21.7885
((.((...........)).))))	chr3:44794664-44794964(-)$1	1	143	166	21.3916
.(((((...........))))).	chr15:32929895-32930181(+)$1	1	169	192	22.7833
((((..............)))))	chr2:24296880-24297164(-)$1	1	132	155	20.8393
((((((...........))))))	chr20:52185557-52185835(-)$1	1	197	220	21.3940
(((.((...........))))))	chr6:42985980-42986209(+)$1	1	14	37	21.3688
(((((............))))).	chr10:70513520-70513799(+)$1	1	213	236	23.0891
(((((.............)))))	chr6:133110826-133111084(-)$1	1	113	136	24.0713
((((((...........))))))	chr2:101885634-101885889(+)$1	1	150	173	21.3940
(((((..............))))	chr2:162087831-162088060(+)$1	1	184	207	19.5137
(((((............))))).	chr5:65339901-65340187(+)$1	1	183	206	23.0891
((((((...........)).)))	chr6:161536070-161536311(+)$1	1	133	156	21.1423
(.((((...........))))).	chr5:71516663-71516940(-)$1	1	254	277	21.6375
(((((...........)))).))	chr7:155094415-155094654(+)$1	1	81	104	21.5643
.((((............))))..	chr14:23612187-23612438(-)$1	1	159	182	23.2037
.(((((...........))))).	chr8:124267804-124268107(-)$1	1	99	122	22.9900
.((((.............)))).	chr2:109392097-109392394(+)$1	1	159	182	23.4255
((((((...........))))))	chr1:78162854-78163121(-)$1	1	235	258	21.3940
(((((.............)))))	chrX:123182782-123183021(+)$1	1	108	131	21.3945
(((((.............)))))	chr1:231509624-231509847(-)$1	1	140	163	24.0713
((((..............)))).	chr6:155141300-155141568(+)$1	1	88	111	20.8211
(((((.............)))))	chr14:50584967-50585215(-)$1	1	39	62	22.5763
(((((...........)))).))	chr7:155094401-155094615(+)$1	1	95	118	21.5643
.((((.............)))).	chr2:47388760-47389015(-)$1	1	179	202	23.6154
..(((............)))...	chr16:18852923-18853196(-)$1	1	53	76	22.8592
(((((...........)).))).	chr8:126033925-126034194(+)$1	1	171	194	20.4963
(((..............))).))	chr6:155618091-155618344(-)$1	1	34	57	20.7267
((.((............)).)))	chrX:123183982-123184246(+)$1	1	198	221	21.8104
(((((.............)))))	chr1:186283718-186283959(-)$1	1	83	106	24.0713
(((((.............)))))	chr5:102509461-102509663(+)$1	1	88	111	23.3162
((((..............)))).	chr3:185639791-185640015(-)$1	1	23	46	21.5163
(((((...........)))).))	chr7:155094357-155094601(+)$1	1	139	162	21.5643
(((((...........)))))((	chr15:91358397-91358681(+)$1	1	11	34	22.6986
(((((............))))).	chr11:46837701-46838014(-)$1	1	203	226	23.0891
..(((.............)))..	chr7:149171997-149172245(-)$1	1	88	111	21.8345
(((((............))))))	chr2:70105998-70106266(+)$1	1	215	238	23.6709
(((((.............)))))	chrX:48117154-48117395(+)$1	1	62	85	24.0713
((((..............)))))	chr2:54044934-54045168(+)$1	1	67	90	22.1719
(((((............))))).	chr2:111395409-111395659(-)$1	1	28	51	23.0891
((((((...........))))))	chr9:33113351-33113635(-)$1	1	140	163	22.0184
.((((...........)))).))	chr1:155031081-155031346(+)$1	1	25	48	22.1421
)((((............)))).)	chr9:90344387-90344658(+)$1	1	229	252	20.8501
((.((...........)).))).	chr2:69658965-69659211(-)$1	1	85	108	20.8364
.((((............))))))	chr16:56717851-56718112(+)$1	1	39	62	23.2908
(((((.............)))))	chr6:18255864-18256178(-)$1	1	219	242	23.3162
(((..............))))))	chr10:43882987-43883277(-)$1	1	26	49	20.6949
..((.............))..))	chr1:165876952-165877282(+)$1	1	50	73	21.1938
..(((...........)))...)	chr3:150460267-150460535(-)$1	1	112	135	21.7103
(((((.............)))))	chr6:33243739-33243943(+)$1	1	147	170	24.0713
.(((((...........))))).	chr14:97014078-97014338(+)$1	1	174	197	21.4102
(((((............).))))	chr8:124340361-124340664(-)$1	1	7	30	23.7200
.(((((...........))))).	chr9:114695134-114695411(+)$1	1	33	56	21.4102
(((((...........).)))))	chr1:46775784-46776020(+)$1	1	134	157	21.8444
(((((.............)))))	chr3:186507601-186507897(-)$1	1	13	36	23.3162
..((((...........))))..	chr17:7150053-7150268(-)$1	1	32	55	22.1112
(((((.............)))))	chr20:61537065-61537340(-)$1	1	50	73	24.0713
((((................)))	chr5:170833301-170833549(+)$1	1	116	139	19.7597

#PSSM
e : 0.25	g : 0.11	f : 0.11	d : 0.10	c : 0.07	! : 0.07	" : 0.07	b : 0.05	: : 0.04	h : 0.02	= : 0.01	a : 0.01	$ : 0.01	# : 0.01	
e : 0.30	d : 0.23	f : 0.11	g : 0.10	c : 0.05	[ : 0.05	h : 0.02	" : 0.02	= : 0.01	$ : 0.01	# : 0.01	! : 0.01	
e : 0.30	d : 0.27	f : 0.11	c : 0.08	g : 0.08	[ : 0.05	h : 0.02	= : 0.01	b : 0.01	
e : 0.30	d : 0.23	f : 0.10	b : 0.08	c : 0.07	g : 0.07	[ : 0.04	h : 0.02	w : 0.02	= : 0.01	
e : 0.26	d : 0.20	b : 0.11	w : 0.08	c : 0.07	g : 0.07	f : 0.05	a : 0.04	h : 0.02	= : 0.01	v : 0.01	y : 0.01	
v : 0.26	u : 0.19	t : 0.17	w : 0.10	d : 0.05	e : 0.05	b : 0.04	f : 0.04	g : 0.02	c : 0.01	y : 0.01	
t : 0.42	v : 0.26	u : 0.19	w : 0.10	y : 0.01	
t : 0.42	v : 0.26	u : 0.19	w : 0.10	y : 0.01	
t : 0.42	v : 0.26	u : 0.19	w : 0.10	y : 0.01	
t : 0.42	v : 0.26	u : 0.19	w : 0.10	y : 0.01	
t : 0.42	v : 0.26	u : 0.19	w : 0.10	y : 0.01	
t : 0.42	v : 0.26	u : 0.19	w : 0.10	y : 0.01	
t : 0.42	v : 0.26	u : 0.19	w : 0.10	y : 0.01	
t : 0.42	v : 0.26	u : 0.19	w : 0.10	y : 0.01	
t : 0.42	v : 0.26	u : 0.19	w : 0.10	y : 0.01	
t : 0.42	v : 0.26	u : 0.19	w : 0.10	y : 0.01	
v : 0.26	t : 0.25	u : 0.19	w : 0.10	d : 0.07	b : 0.04	a : 0.02	e : 0.01	c : 0.01	y : 0.01	
v : 0.25	d : 0.17	e : 0.16	b : 0.13	w : 0.07	c : 0.05	g : 0.04	f : 0.04	] : 0.02	a : 0.01	y : 0.01	
e : 0.27	d : 0.25	c : 0.08	b : 0.08	g : 0.08	f : 0.08	] : 0.05	= : 0.01	w : 0.01	h : 0.01	y : 0.01	
e : 0.29	d : 0.26	c : 0.10	g : 0.10	f : 0.08	] : 0.04	2 : 0.02	h : 0.02	= : 0.01	3 : 0.01	y : 0.01	
e : 0.30	d : 0.20	f : 0.13	g : 0.10	] : 0.08	c : 0.05	2 : 0.02	h : 0.02	3 : 0.02	= : 0.01	
e : 0.33	g : 0.13	f : 0.13	d : 0.11	c : 0.05	b : 0.05	3 : 0.05	h : 0.02	= : 0.01	a : 0.01	8 : 0.01	: : 0.01	2 : 0.01	
e : 0.19	f : 0.14	: : 0.14	g : 0.13	b : 0.07	3 : 0.05	d : 0.04	2 : 0.04	c : 0.02	6 : 0.02	h : 0.02	= : 0.01	> : 0.01	] : 0.01	8 : 0.01	I : 0.01	

#score	1511.1340609624147
#seq	68
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_transcript_m2_run2.txt

#BEAR
d===========aqqqqqqqqa]======	chr17:79962937-79963210(+)$1	273	138	167	17.6911
ffff!!gggggggqqqqqqqqggggggg4	chr22:50031509-50031749(-)$1	240	184	213	17.4188
eeeee$$$$$cccqqqqqqqqccc333ee	chr20:35486239-35486452(-)$1	213	84	113	16.2818
fffff!!ffffffqqqqqqqqffffffff	chr13:114558046-114558283(-)$1	237	42	71	16.5624
bb[ccc[ffffffqqqqqqqqffffffcc	chr19:1420402-1420657(+)$1	255	204	233	16.1008
!dddd[bb!!cccqqqqqqqqccc22bb]	chr16:88962992-88963287(-)$1	295	135	164	16.1634
eee[ccc[eeeeeqqqqqqqqeeeee]cc	chr21:46493852-46494149(+)$1	297	221	250	16.2717
ffffa[bb[ddddqqqqqqqqdddd]bb]	chr21:44268273-44268604(-)$1	331	256	285	15.8422
[bb[bb[a[bb[aqqqqqqqqa]bb]a]b	chr5:649861-650129(+)$1	268	205	234	15.2502
hhhhh[gggggggqqqqqqqqgggggggh	chr1:206907395-206907641(+)$1	246	110	139	16.1147
======accccccqqqqqqqqccc]ccc]	chr6:7109669-7109903(+)$1	234	122	151	17.6130
iiiiiiiii[cccqqqqqqqqccc]iiii	chr5:179247988-179248234(+)$1	246	18	47	17.5330
e"""ccc!!ddddqqqqqqqqdddd22cc	chr3:133485061-133485350(+)$1	289	194	223	16.1594
dddd[ddddddddqqqqqqqqdddd]ddd	chr3:133465149-133465428(+)$1	279	164	193	14.6952
eeeeffffff[bbqqqqqqqqbb]fffff	chr11:64013976-64014219(-)$1	243	169	198	15.3199
ffff!!a[eeeeeqqqqqqqqeeeee]a]	chr22:20111425-20111646(+)$1	221	82	111	16.8988
c[dddd"""ddddqqqqqqqqdddd22dd	chr8:9629645-9629893(+)$1	248	146	175	15.5693
c!!dddd[a[cccqqqqqqqqccc]addd	chr21:46855460-46855747(+)$1	287	172	201	16.2544
=============rrrrrrrrr=======	chr16:89980254-89980515(+)$1	261	110	139	11.2450
eeeeffffff[bbqqqqqqqqbb]fffff	chr11:64013917-64014152(-)$1	235	102	131	15.3199
eeeee!!ffffffqqqqqqqqffffff22	chr2:10588299-10588552(-)$1	253	6	35	16.7000
!bb[bb[a[bb[aqqqqqqqqa]bb]a]b	chr5:649562-649809(+)$1	247	162	191	15.2520
fffbb[gggggggqqqqqqqqggggggg]	chr1:201103999-201104241(-)$1	242	85	114	17.1539
dd!!bb[bbddddqqqqqqqqdddd22bb	chr11:585383-585635(+)$1	252	48	77	14.6489
gg$$$$$ccccccqqqqqqqqccc]ccc8	chr9:136131169-136131424(-)$1	255	65	94	15.9947
eee:a[ccc[cccqqqqqqqqccc]ccc]	chr19:47733418-47733645(-)$1	227	89	118	16.6193
"""bb!!ffffffqqqqqqqqffffff22	chr8:9629626-9629845(+)$1	219	124	153	16.5398
!ccc!!ccc[cccqqqqqqqqccc]ccc2	chr9:140679598-140679858(+)$1	260	98	127	17.5450
!ffffff!!ddddqqqqqqqqdddd22ff	chr9:96435163-96435490(+)$1	327	174	203	15.8785
f[bb$$$$$ddddqqqqqqqqdddd333b	chr1:12642658-12642967(-)$1	309	244	273	15.4231
beeeee!!eeeeeqqqqqqqqeeeee333	chr13:114565104-114565364(-)$1	260	159	188	16.5397
fdddd[eeeee[aqqqqqqqqa]eeeeed	chr5:134263320-134263583(+)$1	263	168	197	15.8523
dddd"""ffffffqqqqqqqqffffff44	chr2:216279513-216279767(-)$1	254	3	32	16.5546
ff####gggggggqqqqqqqqgggggggf	chr16:88567245-88567500(+)$1	255	112	141	17.0382
cgggggggeeeeeqqqqqqqqeeeee333	chr19:4037114-4037367(+)$1	253	88	117	16.7620
f!!bb[ddddcccqqqqqqqqccc]dddd	chr22:49883480-49883749(-)$1	269	61	90	15.9116
ffff"""ccc[bbqqqqqqqqbb]ccc22	chr19:34882747-34883039(+)$1	292	224	253	16.0750
g:eeeeeccc[bbqqqqqqqqbb]ccc22	chr9:126028953-126029216(-)$1	263	99	128	14.4650
dddccc[ffffffqqqqqqqqffffff]c	chr22:50041648-50041903(-)$1	255	23	52	16.2322
fffff[bb[ddddqqqqqqqqddddbbff	chr22:50041211-50041466(-)$1	255	26	55	15.2059
""hhhhhhhh!!aqqqqqqqqa22hhhhh	chr3:128216209-128216422(+)$1	213	46	75	13.8934
4ccca[gggggggqqqqqqqqggggggg]	chr7:933229-933500(+)$1	271	155	184	17.2919
=========[assssssssssa]======	chrX:152953467-152953738(+)$1	271	106	135	10.5043
b"""dddd!!cccqqqqqqqqccc22ddd	chr19:47729428-47729673(-)$1	245	54	83	15.5795
::eeeee[eeeeeqqqqqqqqeeeeeeee	chr19:2198367-2198595(+)$1	228	88	117	13.7030
:ffffff"""cccqqqqqqqqccc333ff	chrM:14682-14941(+)$1	259	36	65	15.8960
[ffffff[ccc[aqqqqqqqqa]cccfff	chr19:1415141-1415391(+)$1	250	63	92	16.6606
dddd!!gggggggqqqqqqqqggggggg]	chr11:47377031-47377358(-)$1	327	131	160	17.2610
$$bb[ffffff[aqqqqqqqqaffffff]	chr16:85647419-85647648(+)$1	229	64	93	15.9938
F:eeeeeffffffqqqqqqqqffffff]e	chr17:80545636-80545905(+)$1	269	10	39	14.6921
eeeee!!dddd[aqqqqqqqqa]dddd]e	chr7:6682174-6682475(+)$1	301	231	260	16.2917
hhhhhha[eeeeeqqqqqqqqeeeee]a]	chr22:49885670-49885907(-)$1	237	166	195	15.4141

#otherMatches

#Seq PSSM
CGCUGGGCAGAGCAGAACACGGCCUCUGC	chr17:79962937-79963210(+)$1	273	138	167	17.6911
GCCGUCGUGGAGCCCAUCCACGCUCUGCU	chr22:50031509-50031749(-)$1	240	184	213	17.4188
CAUGUGUGUGAGAUUGUUCCUUCUGUAAC	chr20:35486239-35486452(-)$1	213	84	113	16.2818
AUCUUCUUGGGGGGAUUGACACCUCCAAA	chr13:114558046-114558283(-)$1	237	42	71	16.5624
GGGAAGUGGUGCCCAGGAGCAGGCGCCCU	chr19:1420402-1420657(+)$1	255	204	233	16.1008
AGCUGCUGGAAGGUCCACAGUCCUGACGA	chr16:88962992-88963287(-)$1	295	135	164	16.1634
ugcggucccagcuaccagggaggcugagg	chr21:46493852-46494149(+)$1	297	221	250	16.2717
CGUUCAGGCCGGCUCCUACCUGCUGUCCA	chr21:44268273-44268604(-)$1	331	256	285	15.8422
GACUGUGAGGCGUGGACUGUGAGGUGUGA	chr5:649861-650129(+)$1	268	205	234	15.2502
GGGGAAGGCGCUGGGUGCCUGCAGCGCCU	chr1:206907395-206907641(+)$1	246	110	139	16.1147
GCGGGCCCGGGCCGCUUGACAGGCGCCGC	chr6:7109669-7109903(+)$1	234	122	151	17.6130
GCUUCUGCUGCAGCCCCGAGCCUGAGGCG	chr5:179247988-179248234(+)$1	246	18	47	17.5330
AAGAUCAACCACUGCAGAUUUGGUGAGUG	chr3:133485061-133485350(+)$1	289	194	223	16.1594
CUGCGCCGUCCUGGGUGAGUGCGGGCACG	chr3:133465149-133465428(+)$1	279	164	193	14.6952
CCCCCCCGGGGCCGCAGGAGAGGGCCCGG	chr11:64013976-64014219(-)$1	243	169	198	15.3199
GGUGGGUGGUGGUCUGCCUAUGCCAUGGG	chr22:20111425-20111646(+)$1	221	82	111	16.8988
uauuggagaaaggggacaaugccuugacc	chr8:9629645-9629893(+)$1	248	146	175	15.5693
GUCUGCCGUGGGCUGAGGCAUGUUGGGGC	chr21:46855460-46855747(+)$1	287	172	201	16.2544
gugugcgcauguggugugggugcacgugu	chr16:89980254-89980515(+)$1	261	110	139	11.2450
CCCCCCCGGGGCCGCAGGAGAGGGCCCGG	chr11:64013917-64014152(-)$1	235	102	131	15.3199
CCGGCCGGAACCGAUCGUGGCUGGUUUGA	chr2:10588299-10588552(-)$1	253	6	35	16.7000
GACUGUGAGGCGUGGACUGUGAGGUGUGA	chr5:649562-649809(+)$1	247	162	191	15.2520
GCCGGUCCCCUCACCUGCACUUGAGGGGU	chr1:201103999-201104241(-)$1	242	85	114	17.1539
GGUAGUAGCCCUUUCCAGCUUGAGGUAGU	chr11:585383-585635(+)$1	252	48	77	14.6489
GGCCUACAUCCCCAAGGACGAGGGCGAUU	chr9:136131169-136131424(-)$1	255	65	94	15.9947
UCCGAGUUUGUGCUGGGUUCUGCAGGGAG	chr19:47733418-47733645(-)$1	227	89	118	16.6193
agacuuacuuucaaagggggcugggggga	chr8:9629626-9629845(+)$1	219	124	153	16.5398
AUGGACCUGAAUGGGGAUGAGUGUGCAGA	chr9:140679598-140679858(+)$1	260	98	127	17.5450
AAGCGUGUGCCAUGGGAGGGAGUGGGCUA	chr9:96435163-96435490(+)$1	327	174	203	15.8785
UGACAAUGGCUGCAAGGCAAGGCGGGGGG	chr1:12642658-12642967(-)$1	309	244	273	15.4231
GCCUGGCCGCAGCCCCUCCUCGCUGUCCU	chr13:114565104-114565364(-)$1	260	159	188	16.5397
UUGCCAUGAUUGUGAGGGGCAGGAGUCAG	chr5:134263320-134263583(+)$1	263	168	197	15.8523
UAAUGAUGACUGUCCAUGUACACAGUUUU	chr2:216279513-216279767(-)$1	254	3	32	16.5546
CUUGGCUGGGGAUAUGUCAGGGUCUCUAA	chr16:88567245-88567500(+)$1	255	112	141	17.0382
GGCGGGGGAGGGAAUGCGGGGUCCCUGGA	chr19:4037114-4037367(+)$1	253	88	117	16.7620
UGAGGAUACCCCAGAGUCAGGUGGAGGUG	chr22:49883480-49883749(-)$1	269	61	90	15.9116
AUCUGGGUCUGUUAAUGUCUGAGGAGGUA	chr19:34882747-34883039(+)$1	292	224	253	16.0750
UGGGGUAGAGGAUGUAGAAGAAUGCUUAA	chr9:126028953-126029216(-)$1	263	99	128	14.4650
CCCUGAGCGGCCCUGGCUUGUGGGCCGGU	chr22:50041648-50041903(-)$1	255	23	52	16.2322
UGCAGACUCGCCUGUCUCAGGAGGCAGCU	chr22:50041211-50041466(-)$1	255	26	55	15.2059
GGUGUGCCCUGGUGAGCUGAGAGAGGGGC	chr3:128216209-128216422(+)$1	213	46	75	13.8934
UGACGGUGUUCACUGUGCUGUGUGAGCAG	chr7:933229-933500(+)$1	271	155	184	17.2919
gggcggggggcgcgggccACAGGCCCCUG	chrX:152953467-152953738(+)$1	271	106	135	10.5043
CGGAGCCCGAgccagggccagggccaggg	chr19:47729428-47729673(-)$1	245	54	83	15.5795
GUCUGGGUGGACGAGUGGCCCUGUCCUCC	chr19:2198367-2198595(+)$1	228	88	117	13.7030
AUCGUUGUAUUUCAACUACAAGAACACCA	chrM:14682-14941(+)$1	259	36	65	15.8960
UCCUUCUGCCAGUGAGGUGGGGGUGGAGG	chr19:1415141-1415391(+)$1	250	63	92	16.6606
CGGGCUGGGGCAGCCGUUCCCCUGCCCUU	chr11:47377031-47377358(-)$1	327	131	160	17.2610
CUACUGGGGCCGCGCCGGUUAGGGUUCUU	chr16:85647419-85647648(+)$1	229	64	93	15.9938
UAUCUACCUUCGCCCUGCCCUGUGGAGUG	chr17:80545636-80545905(+)$1	269	10	39	14.6921
CAGCCAGCCUUGGGGAGGAGAUGAAGGGG	chr7:6682174-6682475(+)$1	301	231	260	16.2917
GGGGGCCUCCUGGGGUCCAGGCCAGGUGA	chr22:49885670-49885907(-)$1	237	166	195	15.4141

#DB
(((((((((((((........).))))))	chr17:79962937-79963210(+)$1	1	138	167	17.6911
((((..(((((((........))))))).	chr22:50031509-50031749(-)$1	1	184	213	17.4188
(((((.....(((........)))...))	chr20:35486239-35486452(-)$1	1	84	113	16.2818
(((((..((((((........))))))))	chr13:114558046-114558283(-)$1	1	42	71	16.5624
((.(((.((((((........))))))))	chr19:1420402-1420657(+)$1	1	204	233	16.1008
.((((.((..(((........)))..)).	chr16:88962992-88963287(-)$1	1	135	164	16.1634
(((.(((.(((((........))))).))	chr21:46493852-46494149(+)$1	1	221	250	16.2717
(((((.((.((((........)))).)).	chr21:44268273-44268604(-)$1	1	256	285	15.8422
.((.((.(.((.(........).)).).)	chr5:649861-650129(+)$1	1	205	234	15.2502
(((((.(((((((........))))))))	chr1:206907395-206907641(+)$1	1	110	139	16.1147
(((((((((((((........))).))).	chr6:7109669-7109903(+)$1	1	122	151	17.6130
(((((((((.(((........))).))))	chr5:179247988-179248234(+)$1	1	18	47	17.5330
(...(((..((((........))))..))	chr3:133485061-133485350(+)$1	1	194	223	16.1594
((((.((((((((........)))).)))	chr3:133465149-133465428(+)$1	1	164	193	14.6952
((((((((((.((........)).)))))	chr11:64013976-64014219(-)$1	1	169	198	15.3199
((((..(.(((((........))))).).	chr22:20111425-20111646(+)$1	1	82	111	16.8988
(.((((...((((........))))..))	chr8:9629645-9629893(+)$1	1	146	175	15.5693
(..((((.(.(((........))).))))	chr21:46855460-46855747(+)$1	1	172	201	16.2544
(((((((((((((.........)))))))	chr16:89980254-89980515(+)$1	1	110	139	11.2450
((((((((((.((........)).)))))	chr11:64013917-64014152(-)$1	1	102	131	15.3199
(((((..((((((........))))))..	chr2:10588299-10588552(-)$1	1	6	35	16.7000
.((.((.(.((.(........).)).).)	chr5:649562-649809(+)$1	1	162	191	15.2520
(((((.(((((((........))))))).	chr1:201103999-201104241(-)$1	1	85	114	17.1539
((..((.((((((........))))..))	chr11:585383-585635(+)$1	1	48	77	14.6489
((.....((((((........))).))).	chr9:136131169-136131424(-)$1	1	65	94	15.9947
))).(.(((.(((........))).))).	chr19:47733418-47733645(-)$1	1	89	118	16.6193
...((..((((((........))))))..	chr8:9629626-9629845(+)$1	1	124	153	16.5398
.(((..(((.(((........))).))).	chr9:140679598-140679858(+)$1	1	98	127	17.5450
.((((((..((((........))))..))	chr9:96435163-96435490(+)$1	1	174	203	15.8785
(.((.....((((........))))...)	chr1:12642658-12642967(-)$1	1	244	273	15.4231
((((((..(((((........)))))...	chr13:114565104-114565364(-)$1	1	159	188	16.5397
)((((.(((((.(........).))))))	chr5:134263320-134263583(+)$1	1	168	197	15.8523
((((...((((((........))))))..	chr2:216279513-216279767(-)$1	1	3	32	16.5546
((....(((((((........))))))))	chr16:88567245-88567500(+)$1	1	112	141	17.0382
)((((((((((((........)))))...	chr19:4037114-4037367(+)$1	1	88	117	16.7620
(..((.(((((((........))).))))	chr22:49883480-49883749(-)$1	1	61	90	15.9116
((((...(((.((........)).)))..	chr19:34882747-34883039(+)$1	1	224	253	16.0750
).((((((((.((........)).)))..	chr9:126028953-126029216(-)$1	1	99	128	14.4650
)))(((.((((((........)))))).)	chr22:50041648-50041903(-)$1	1	23	52	16.2322
(((((.((.((((........))))))))	chr22:50041211-50041466(-)$1	1	26	55	15.2059
..((((((((..(........)..)))))	chr3:128216209-128216422(+)$1	1	46	75	13.8934
.)))(.(((((((........))))))).	chr7:933229-933500(+)$1	1	155	184	17.2919
(((((((((.(..........).))))))	chrX:152953467-152953738(+)$1	1	106	135	10.5043
(...((((..(((........)))..)))	chr19:47729428-47729673(-)$1	1	54	83	15.5795
..(((((.(((((........))))))))	chr19:2198367-2198595(+)$1	1	88	117	13.7030
.((((((...(((........)))...))	chrM:14682-14941(+)$1	1	36	65	15.8960
.((((((.(((.(........).))))))	chr19:1415141-1415391(+)$1	1	63	92	16.6606
((((..(((((((........))))))).	chr11:47377031-47377358(-)$1	1	131	160	17.2610
..((.((((((.(........))))))).	chr16:85647419-85647648(+)$1	1	64	93	15.9938
(.(((((((((((........)))))).)	chr17:80545636-80545905(+)$1	1	10	39	14.6921
(((((..((((.(........).)))).)	chr7:6682174-6682475(+)$1	1	231	260	16.2917
(((((((.(((((........))))).).	chr22:49885670-49885907(-)$1	1	166	195	15.4141

#PSSM
f : 0.21	e : 0.15	d : 0.11	! : 0.07	b : 0.05	= : 0.05	c : 0.05	[ : 0.03	h : 0.03	g : 0.03	" : 0.03	: : 0.03	i : 0.01	4 : 0.01	$ : 0.01	F : 0.01	
f : 0.21	e : 0.15	d : 0.13	= : 0.07	" : 0.07	b : 0.05	: : 0.05	h : 0.03	[ : 0.03	! : 0.03	g : 0.03	c : 0.03	i : 0.01	$ : 0.01	
e : 0.21	f : 0.19	d : 0.13	= : 0.07	b : 0.07	h : 0.05	" : 0.05	! : 0.05	c : 0.03	[ : 0.01	i : 0.01	$ : 0.01	# : 0.01	g : 0.01	
f : 0.17	e : 0.17	d : 0.13	b : 0.09	= : 0.07	c : 0.07	[ : 0.05	h : 0.05	" : 0.03	i : 0.01	! : 0.01	$ : 0.01	: : 0.01	# : 0.01	g : 0.01	
e : 0.13	f : 0.13	b : 0.11	d : 0.09	= : 0.07	! : 0.07	c : 0.07	a : 0.05	h : 0.05	[ : 0.03	$ : 0.03	" : 0.03	i : 0.01	# : 0.01	g : 0.01	
[ : 0.17	! : 0.15	f : 0.11	= : 0.07	c : 0.07	d : 0.07	e : 0.07	$ : 0.05	b : 0.05	" : 0.03	h : 0.03	i : 0.01	# : 0.01	g : 0.01	
g : 0.13	f : 0.11	! : 0.09	[ : 0.09	c : 0.07	d : 0.07	e : 0.07	= : 0.05	$ : 0.05	b : 0.05	a : 0.05	" : 0.05	i : 0.01	h : 0.01	
f : 0.19	g : 0.13	[ : 0.11	c : 0.11	b : 0.07	d : 0.07	= : 0.05	! : 0.05	$ : 0.03	a : 0.03	" : 0.03	i : 0.01	e : 0.01	h : 0.01	
f : 0.19	e : 0.13	c : 0.13	g : 0.11	! : 0.07	[ : 0.07	= : 0.05	d : 0.05	$ : 0.03	" : 0.03	i : 0.01	a : 0.01	b : 0.01	h : 0.01	
f : 0.19	d : 0.19	e : 0.13	g : 0.11	c : 0.09	[ : 0.09	= : 0.03	! : 0.03	b : 0.03	$ : 0.01	h : 0.01	" : 0.01	
c : 0.23	d : 0.17	f : 0.15	e : 0.13	g : 0.11	[ : 0.07	= : 0.03	b : 0.03	! : 0.01	a : 0.01	
c : 0.21	d : 0.15	f : 0.13	g : 0.11	e : 0.11	[ : 0.11	b : 0.07	= : 0.03	! : 0.01	s : 0.01	
c : 0.21	a : 0.15	d : 0.15	f : 0.13	g : 0.11	e : 0.11	b : 0.07	= : 0.01	s : 0.01	
q : 0.96	r : 0.01	s : 0.01	
q : 0.96	r : 0.01	s : 0.01	
q : 0.96	r : 0.01	s : 0.01	
q : 0.96	r : 0.01	s : 0.01	
q : 0.96	r : 0.01	s : 0.01	
q : 0.96	r : 0.01	s : 0.01	
q : 0.96	r : 0.01	s : 0.01	
q : 0.96	r : 0.01	s : 0.01	
c : 0.21	a : 0.17	d : 0.15	f : 0.13	g : 0.11	e : 0.11	b : 0.07	r : 0.01	
c : 0.21	f : 0.15	d : 0.15	] : 0.13	g : 0.11	e : 0.11	b : 0.07	= : 0.01	2 : 0.01	
c : 0.23	d : 0.17	f : 0.15	e : 0.13	g : 0.11	] : 0.07	= : 0.05	b : 0.03	2 : 0.01	
f : 0.19	d : 0.17	e : 0.13	] : 0.13	g : 0.11	= : 0.05	c : 0.05	3 : 0.03	2 : 0.03	b : 0.03	h : 0.01	
f : 0.19	e : 0.13	c : 0.13	g : 0.11	2 : 0.11	] : 0.07	= : 0.05	3 : 0.05	d : 0.03	i : 0.01	a : 0.01	b : 0.01	h : 0.01	
f : 0.21	g : 0.11	c : 0.11	3 : 0.09	d : 0.09	2 : 0.07	= : 0.05	b : 0.05	] : 0.05	a : 0.03	e : 0.03	i : 0.01	h : 0.01	
f : 0.15	c : 0.13	g : 0.11	] : 0.09	d : 0.09	2 : 0.07	= : 0.05	e : 0.05	b : 0.05	3 : 0.05	a : 0.03	i : 0.01	4 : 0.01	h : 0.01	
] : 0.19	f : 0.15	d : 0.11	2 : 0.09	e : 0.07	c : 0.07	b : 0.07	= : 0.05	4 : 0.03	h : 0.03	3 : 0.03	i : 0.01	8 : 0.01	

#score	825.880601418873
#seq	52
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF324PNB_SSB_UTR_m1_run2.txt

#BEAR
GGGGGccc[dddd^^^^^^^^^^^^^^^^^^^^^dddd]c	chr6:31802978-31803200(+)$1	222	38	78	53.3342
GGGGGccc[dddd^^^^^^^^^^^^^^^^^^^^^dddd]c	chr6:31802963-31803166(+)$1	203	53	93	53.3342
GGGGGccc[dddd^^^^^^^^^^^^^^^^^^^^^dddd]c	chr6:31802966-31803178(+)$1	212	50	90	53.3342

#otherMatches

#Seq PSSM
CGGUCGCCCGGGGAUAGGAAGGGAGUGAUGAUGACCCCAG	chr6:31802978-31803200(+)$1	222	38	78	53.3342
CGGUCGCCCGGGGAUAGGAAGGGAGUGAUGAUGACCCCAG	chr6:31802963-31803166(+)$1	203	53	93	53.3342
CGGUCGCCCGGGGAUAGGAAGGGAGUGAUGAUGACCCCAG	chr6:31802966-31803178(+)$1	212	50	90	53.3342

#DB
((((((((.((((.....................)))).)	chr6:31802978-31803200(+)$1	1	38	78	53.3342
((((((((.((((.....................)))).)	chr6:31802963-31803166(+)$1	1	53	93	53.3342
((((((((.((((.....................)))).)	chr6:31802966-31803178(+)$1	1	50	90	53.3342

#PSSM
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
[ : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
] : 1.00	
c : 1.00	

#score	160.00286570340006
#seq	3
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_UTR_m2_run1.txt

#BEAR
!eeeeeooooooeeeee]cc	chr14:105713594-105713807(-)$1	213	186	206	10.6176
ggg!!aooooooa22ggggg	chr12:104697462-104697747(+)$1	285	249	269	11.7779
c!!cccooooooccc4444c	chr19:45166555-45166867(+)$1	312	5	25	12.1275
ee[cccooooooccc]eeee	chr20:57466635-57466877(+)$1	242	40	60	11.7460
ddddbboooooobb]dddd:	chr16:8953961-8954245(+)$1	284	75	95	10.3158
dddcccooooooccccccmm	chr16:24801582-24801828(+)$1	246	167	187	10.4673
dbbcccooooooccc]bb22	chr7:77166609-77166977(+)$1	368	210	230	10.5847
$$ddddoooooodddd22cc	chr7:148921649-148921908(+)$1	259	186	206	9.9933
iiiiiiooooooiiiiiiii	chr19:42758633-42758902(-)$1	269	42	62	11.7807
gg!!bboooooobb]ggggg	chr16:87735387-87735633(-)$1	246	30	50	11.8344
ddd[bboooooobb]dddd:	chr6:1314084-1314323(+)$1	239	54	74	10.5226
!!ddddoooooodddd]eee	chr14:105707731-105707991(-)$1	260	58	78	10.7705
b[ddddoooooodddd]bbC	chr16:89346582-89346830(-)$1	248	172	192	9.4357
$$$cccooooooccc4444c	chr19:2270116-2270391(+)$1	275	39	59	11.2010
ccccccooooooccc]ccc]	chr22:31741781-31742046(-)$1	265	3	23	12.0047
hhhh[aooooooa]hhhhhh	chr2:242447501-242447763(-)$1	262	20	40	10.4766
ddd[bboooooobb]dddd:	chr4:1228547-1228834(-)$1	287	5	25	10.5226
cc[cccooooooccc]ccc:	chr1:2160056-2160328(+)$1	272	197	217	11.4629
dd[cccoooooocccdddd]	chr16:75297869-75298110(-)$1	241	56	76	11.8465
dd[cccoooooocccdddd]	chr14:105714209-105714500(-)$1	291	152	172	11.8465
[eeeeeooooooeeeee]ff	chr9:127020433-127020709(+)$1	276	26	46	10.2494
ffffffooooooffffff33	chr12:104697337-104697643(+)$1	306	80	100	10.1605
a[ddddoooooodddd]aDD	chr8:38644786-38645046(+)$1	260	79	99	9.0292
ee[cccooooooccc22eee	chr5:139493572-139493864(+)$1	292	217	237	11.5102
hhhhhhoooooohhhhhhhh	chr19:13263725-13264008(+)$1	283	177	197	9.4665
eeeeeeooooooeeeee]ee	chr14:105714725-105714965(-)$1	240	29	49	10.2676
eeeeeaooooooa]eeeee2	chr17:79860493-79860770(-)$1	277	212	232	11.1143
=========lll========	chr20:57467309-57467621(+)$1	312	213	233	7.7439
ggggggoooooogggggggb	chr7:1177631-1177906(-)$1	275	41	61	11.3720
gggg[aooooooa]gggggg	chr17:43225927-43226209(+)$1	282	179	199	12.1749
ccccccooooooccc]ccc:	chr11:849872-850131(+)$1	259	172	192	11.2438
ddd[bboooooobbdddd:E	chr16:8941585-8941855(+)$1	270	88	108	9.3008
ccc[cccooooooccc]ccc	chr13:45150564-45150891(-)$1	327	307	327	10.3000
b!!bbaooooooa]bb22bb	chr11:63883565-63883873(-)$1	308	11	31	10.3807
dd[a[aooooooa]a]dddd	chr7:77166514-77166809(+)$1	295	239	259	11.8719
d[bbbboooooobb22bb]d	chr17:80192375-80192680(+)$1	305	178	198	10.1962
bb!!bboooooobb22bb>>	chr10:105361290-105361572(-)$1	282	53	73	10.2067
####bboooooobb22dddd	chr1:182359846-182360105(-)$1	259	51	71	10.9519
gggggaooooooa]gggggg	chr22:31741630-31741912(-)$1	282	121	141	12.1115
dd!!bboooooobb22dddd	chr17:80197768-80198012(+)$1	244	165	185	11.1991
=======nnnnn========	chr8:145013646-145013926(-)$1	280	35	55	7.4913
gggg[aooooooa]gggggg	chr22:45724716-45724979(+)$1	263	37	57	12.1749
ffff[aooooooa]ffffff	chr16:87732286-87732540(-)$1	254	96	116	10.7292
!eeeeeooooooeeeee333	chr19:46389019-46389290(-)$1	271	70	90	10.7207
d!!cccoooooocccdddd5	chr1:27022733-27023026(+)$1	293	226	246	11.2960
ffffffooooooffffff22	chr19:56166196-56166485(+)$1	289	73	93	9.7681
f[ddddoooooodddd]fff	chr18:55711519-55711796(+)$1	277	236	256	10.4342
e[bb[aooooooa]bb]eee	chr3:195622690-195622959(-)$1	269	240	260	10.7522
b"""bboooooobb333bb]	chr16:8953051-8953357(+)$1	306	137	157	11.2212
gggg[aooooooa]gggggg	chr14:105715205-105715474(-)$1	269	162	182	12.1749
======oooooo========	chr11:65381128-65381399(-)$1	271	9	29	12.1969

#otherMatches

#Seq PSSM
GGUGCGUAACUCCGCACGGC	chr14:105713594-105713807(-)$1	213	186	206	10.6176
GAUGAAGAUGGAUGUGUCAG	chr12:104697462-104697747(+)$1	285	249	269	11.7779
UUGGGCCAAGAUGCUAAAUG	chr19:45166555-45166867(+)$1	312	5	25	12.1275
cccggcccgcccgcccggcg	chr20:57466635-57466877(+)$1	242	40	60	11.7460
GCAGCUGUCACAAGCCUGCA	chr16:8953961-8954245(+)$1	284	75	95	10.3158
GAAGUCGAAGAGGAUGGGGA	chr16:24801582-24801828(+)$1	246	167	187	10.4673
ggcggcgggggggccAGCGA	chr7:77166609-77166977(+)$1	368	210	230	10.5847
CGGCAACAGGCAUUGCACUC	chr7:148921649-148921908(+)$1	259	186	206	9.9933
CUCCCGGGAUCACGGGGGUG	chr19:42758633-42758902(-)$1	269	42	62	11.7807
CUGAGCUUUGUUGCAGGCCC	chr16:87735387-87735633(-)$1	246	30	50	11.8344
GCUCCUAGCCUGAGUAGCGC	chr6:1314084-1314323(+)$1	239	54	74	10.5226
UUCGGUGCGAUGGCUGCCCU	chr14:105707731-105707991(-)$1	260	58	78	10.7705
CUGGAAAAUAGCUUCCUGGA	chr16:89346582-89346830(-)$1	248	172	192	9.4357
GAAUUCGGUUUGGAGGAAGG	chr19:2270116-2270391(+)$1	275	39	59	11.2010
GCCCGGGAAAAgccgcggcg	chr22:31741781-31742046(-)$1	265	3	23	12.0047
ccuuggaagaggugggggcg	chr2:242447501-242447763(-)$1	262	20	40	10.4766
ucggcagcaugauggcgagu	chr4:1228547-1228834(-)$1	287	5	25	10.5226
CUGCAGAAGACGCUGGAGCA	chr1:2160056-2160328(+)$1	272	197	217	11.4629
UCAUCUGUAACAAGAGAGGA	chr16:75297869-75298110(-)$1	241	56	76	11.8465
ugcagcccuggagcuugggc	chr14:105714209-105714500(-)$1	291	152	172	11.8465
agggcgggcgcgcgcccACG	chr9:127020433-127020709(+)$1	276	26	46	10.2494
GCGAGCGCCUCGGCUUGUgg	chr12:104697337-104697643(+)$1	306	80	100	10.1605
GGGGCCCGCUGCGGCCGCAC	chr8:38644786-38645046(+)$1	260	79	99	9.0292
CGAGCAGGGUGGUGCGGCGC	chr5:139493572-139493864(+)$1	292	217	237	11.5102
UUGUGUAGAGAGGCGUGAGC	chr19:13263725-13264008(+)$1	283	177	197	9.4665
GGGGCGCCGUcccgcccgcc	chr14:105714725-105714965(-)$1	240	29	49	10.2676
GCGGCCGUCGGGGAGCCGCU	chr17:79860493-79860770(-)$1	277	212	232	11.1143
GGGGCUGGUGACAUCAGCCC	chr20:57467309-57467621(+)$1	312	213	233	7.7439
GUUCACGCUUaggugggcga	chr7:1177631-1177906(-)$1	275	41	61	11.3720
UUGUGGGCUCUGCGGCAGGG	chr17:43225927-43226209(+)$1	282	179	199	12.1749
CGGACGAGUCCACGUACCGG	chr11:849872-850131(+)$1	259	172	192	11.2438
UUCUCCUAACGUGGGAGCGG	chr16:8941585-8941855(+)$1	270	88	108	9.3008
GUUGGCCGGAGAAGGUGGGC	chr13:45150564-45150891(-)$1	327	307	327	10.3000
GAGCCCGUAGCAGAGGAACA	chr11:63883565-63883873(-)$1	308	11	31	10.3807
GGGAGGGAGGGACGUGCUGG	chr7:77166514-77166809(+)$1	295	239	259	11.8719
GGAGCCACGCACGGAACUGC	chr17:80192375-80192680(+)$1	305	178	198	10.1962
UGAGCGGUGAGACGAACAAA	chr10:105361290-105361572(-)$1	282	53	73	10.2067
AGGGACAUUUCAGUGGGAAG	chr1:182359846-182360105(-)$1	259	51	71	10.9519
UGGGGGGUGGUGCACCCCGC	chr22:31741630-31741912(-)$1	282	121	141	12.1115
CUCCUCUGCAAUGAAAAGCA	chr17:80197768-80198012(+)$1	244	165	185	11.1991
AGGGGGCUGCUUGCUCCUUC	chr8:145013646-145013926(-)$1	280	35	55	7.4913
agcauagcagcaucugcuuc	chr22:45724716-45724979(+)$1	263	37	57	12.1749
CUGCCCGACUGUGUGCAGGG	chr16:87732286-87732540(-)$1	254	96	116	10.7292
GUGAGCAGAAAGGCUUAGGG	chr19:46389019-46389290(-)$1	271	70	90	10.7207
GGAGCUGAAGAAAGCCGAgc	chr1:27022733-27023026(+)$1	293	226	246	11.2960
gcucgcgggcgggcgggcgg	chr19:56166196-56166485(+)$1	289	73	93	9.7681
CGGCCGCUUACCCGGCAGGG	chr18:55711519-55711796(+)$1	277	236	256	10.4342
GGGGGCGGGGUGGGCUGCAG	chr3:195622690-195622959(-)$1	269	240	260	10.7522
UGACCUGGAAAGAGAAGAGG	chr16:8953051-8953357(+)$1	306	137	157	11.2212
gggcgggcugcgcggcccgg	chr14:105715205-105715474(-)$1	269	162	182	12.1749
CGGGAGACAACACUCCUGGC	chr11:65381128-65381399(-)$1	271	9	29	12.1969

#DB
.(((((......))))).))	chr14:105713594-105713807(-)$1	1	186	206	10.6176
(((..(......)..)))))	chr12:104697462-104697747(+)$1	1	249	269	11.7779
(..(((......)))....)	chr19:45166555-45166867(+)$1	1	5	25	12.1275
((.(((......))).))))	chr20:57466635-57466877(+)$1	1	40	60	11.7460
((((((......)).)))).	chr16:8953961-8954245(+)$1	1	75	95	10.3158
)))(((......)))(((..	chr16:24801582-24801828(+)$1	1	167	187	10.4673
((((((......))).))..	chr7:77166609-77166977(+)$1	1	210	230	10.5847
..((((......))))..))	chr7:148921649-148921908(+)$1	1	186	206	9.9933
((((((......))))))))	chr19:42758633-42758902(-)$1	1	42	62	11.7807
((..((......)).)))))	chr16:87735387-87735633(-)$1	1	30	50	11.8344
(((.((......)).)))).	chr6:1314084-1314323(+)$1	1	54	74	10.5226
..((((......)))).)))	chr14:105707731-105707991(-)$1	1	58	78	10.7705
(.((((......)))).)))	chr16:89346582-89346830(-)$1	1	172	192	9.4357
...(((......)))....)	chr19:2270116-2270391(+)$1	1	39	59	11.2010
((((((......))).))).	chr22:31741781-31742046(-)$1	1	3	23	12.0047
((((.(......).))))))	chr2:242447501-242447763(-)$1	1	20	40	10.4766
(((.((......)).)))).	chr4:1228547-1228834(-)$1	1	5	25	10.5226
((.(((......))).))).	chr1:2160056-2160328(+)$1	1	197	217	11.4629
((.(((......))))))).	chr16:75297869-75298110(-)$1	1	56	76	11.8465
((.(((......))))))).	chr14:105714209-105714500(-)$1	1	152	172	11.8465
.(((((......))))).))	chr9:127020433-127020709(+)$1	1	26	46	10.2494
((((((......))))))..	chr12:104697337-104697643(+)$1	1	80	100	10.1605
(.((((......)))).)((	chr8:38644786-38645046(+)$1	1	79	99	9.0292
((.(((......)))..)))	chr5:139493572-139493864(+)$1	1	217	237	11.5102
((((((......))))))))	chr19:13263725-13264008(+)$1	1	177	197	9.4665
((((((......))))).))	chr14:105714725-105714965(-)$1	1	29	49	10.2676
((((((......).))))).	chr17:79860493-79860770(-)$1	1	212	232	11.1143
(((((((((...))))))))	chr20:57467309-57467621(+)$1	1	213	233	7.7439
((((((......)))))))(	chr7:1177631-1177906(-)$1	1	41	61	11.3720
((((.(......).))))))	chr17:43225927-43226209(+)$1	1	179	199	12.1749
((((((......))).))).	chr11:849872-850131(+)$1	1	172	192	11.2438
(((.((......)))))).(	chr16:8941585-8941855(+)$1	1	88	108	9.3008
(((.(((......))).)))	chr13:45150564-45150891(-)$1	1	307	327	10.3000
(..(((......).))..))	chr11:63883565-63883873(-)$1	1	11	31	10.3807
((.(.(......).).))))	chr7:77166514-77166809(+)$1	1	239	259	11.8719
(.((((......))..)).)	chr17:80192375-80192680(+)$1	1	178	198	10.1962
((..((......))..))..	chr10:105361290-105361572(-)$1	1	53	73	10.2067
....((......))..))))	chr1:182359846-182360105(-)$1	1	51	71	10.9519
((((((......).))))))	chr22:31741630-31741912(-)$1	1	121	141	12.1115
((..((......))..))))	chr17:80197768-80198012(+)$1	1	165	185	11.1991
(((((((.....))))))))	chr8:145013646-145013926(-)$1	1	35	55	7.4913
((((.(......).))))))	chr22:45724716-45724979(+)$1	1	37	57	12.1749
((((.(......).))))))	chr16:87732286-87732540(-)$1	1	96	116	10.7292
.(((((......)))))...	chr19:46389019-46389290(-)$1	1	70	90	10.7207
(..(((......))))))).	chr1:27022733-27023026(+)$1	1	226	246	11.2960
((((((......))))))..	chr19:56166196-56166485(+)$1	1	73	93	9.7681
(.((((......)))).)))	chr18:55711519-55711796(+)$1	1	236	256	10.4342
(.((.(......).)).)))	chr3:195622690-195622959(-)$1	1	240	260	10.7522
(...((......))...)).	chr16:8953051-8953357(+)$1	1	137	157	11.2212
((((.(......).))))))	chr14:105715205-105715474(-)$1	1	162	182	12.1749
((((((......))))))))	chr11:65381128-65381399(-)$1	1	9	29	12.1969

#PSSM
d : 0.23	g : 0.13	c : 0.09	e : 0.09	b : 0.07	f : 0.07	! : 0.05	= : 0.05	$ : 0.03	h : 0.03	i : 0.01	[ : 0.01	a : 0.01	# : 0.01	
d : 0.17	e : 0.13	g : 0.13	[ : 0.09	! : 0.07	c : 0.07	f : 0.05	= : 0.05	b : 0.03	$ : 0.03	h : 0.03	i : 0.01	# : 0.01	" : 0.01	
d : 0.19	g : 0.11	! : 0.11	[ : 0.11	e : 0.09	b : 0.05	c : 0.05	f : 0.05	= : 0.05	h : 0.03	i : 0.01	$ : 0.01	# : 0.01	" : 0.01	
c : 0.23	d : 0.11	e : 0.09	g : 0.09	! : 0.07	[ : 0.07	f : 0.05	= : 0.05	b : 0.05	h : 0.03	i : 0.01	a : 0.01	# : 0.01	" : 0.01	
c : 0.25	b : 0.21	[ : 0.13	e : 0.09	d : 0.09	= : 0.05	f : 0.03	g : 0.03	! : 0.01	i : 0.01	h : 0.01	
c : 0.25	a : 0.21	b : 0.19	d : 0.09	e : 0.07	= : 0.05	f : 0.03	i : 0.01	h : 0.01	g : 0.01	
o : 0.94	= : 0.03	c : 0.01	
o : 0.96	= : 0.01	n : 0.01	
o : 0.96	= : 0.01	n : 0.01	
o : 0.96	l : 0.01	n : 0.01	
o : 0.96	l : 0.01	n : 0.01	
o : 0.96	l : 0.01	n : 0.01	
c : 0.23	a : 0.21	b : 0.19	d : 0.09	e : 0.07	= : 0.05	f : 0.03	i : 0.01	h : 0.01	g : 0.01	o : 0.01	
c : 0.25	b : 0.19	] : 0.19	d : 0.09	e : 0.07	= : 0.05	f : 0.03	2 : 0.01	i : 0.01	h : 0.01	g : 0.01	
c : 0.25	d : 0.11	e : 0.09	2 : 0.09	g : 0.09	] : 0.07	f : 0.05	= : 0.05	h : 0.03	b : 0.03	i : 0.01	a : 0.01	3 : 0.01	
d : 0.23	g : 0.13	] : 0.11	e : 0.09	2 : 0.09	f : 0.05	= : 0.05	4 : 0.03	c : 0.03	h : 0.03	b : 0.03	i : 0.01	3 : 0.01	
d : 0.19	g : 0.13	e : 0.11	] : 0.11	c : 0.07	b : 0.05	2 : 0.05	f : 0.05	= : 0.05	4 : 0.03	h : 0.03	i : 0.01	3 : 0.01	
d : 0.19	g : 0.13	e : 0.09	c : 0.09	b : 0.09	f : 0.07	] : 0.05	= : 0.05	4 : 0.03	2 : 0.03	h : 0.03	i : 0.01	a : 0.01	3 : 0.01	
d : 0.17	g : 0.13	c : 0.11	e : 0.11	b : 0.05	f : 0.05	= : 0.05	4 : 0.03	2 : 0.03	h : 0.03	3 : 0.03	m : 0.01	i : 0.01	D : 0.01	: : 0.01	] : 0.01	> : 0.01	
g : 0.11	c : 0.09	e : 0.09	: : 0.09	] : 0.07	d : 0.07	2 : 0.05	f : 0.05	= : 0.05	h : 0.03	3 : 0.03	b : 0.03	m : 0.01	i : 0.01	C : 0.01	D : 0.01	E : 0.01	> : 0.01	5 : 0.01	

#score	551.1478198310847
#seq	51
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_transcript_m1_run1.txt

#BEAR
gggg!!a####a[eeeeellleeeee]a22a22ggggggg	chr8:145020689-145020985(-)$1	296	121	161	14.0707
$dddd!!ccc!!ddddammmma]dddd22ccc]dddd333	chr10:104408997-104409261(+)$1	264	73	113	13.6400
ccccc[ccc"""eeeeemmmmeeeee333cccccc]ccc]	chr4:1241215-1241463(-)$1	248	21	61	16.4937
=========ccc[bb=============lll=========	chr2:47402944-47403221(-)$1	277	195	235	13.5975
"ccc[ccc"""ffffffmmmmffffff]ccc]ccc333dd	chr7:2672513-2672765(+)$1	252	115	155	13.9502
c[ffffff####eeeeemmmmeeeee]ffffffccchhhh	chr2:231902837-231903078(+)$1	241	28	68	13.4766
============"""bbmmmmbb55555============	chr22:19159939-19160191(+)$1	252	134	174	15.2887
========bbeeeeeooooooeeeee4444bb]=======	chr1:21995411-21995734(-)$1	323	205	245	15.2040
iiiiiiii"""ccc[bbmmmmbb]ccc]iiiiiiiii]cc	chr16:1405675-1405909(+)$1	234	155	195	17.5450
======[a!!dddd[bbmmmmbb]dddd]a]=========	chr21:45285275-45285553(+)$1	278	85	125	16.1433
gggddddbb####ddddmmmmdddd333bb]dddd]gggg	chr4:1341007-1341260(+)$1	253	77	117	15.4341
ggggggg!!ccc[bb[ammmma]bbccc22ggggggg]ee	chr16:583955-584211(+)$1	256	21	61	14.4151
!===========[a[bblllbb]a===========dddd]	chr22:50739243-50739515(-)$1	272	106	146	15.4360
ccc[ccc"""cccddddmmmmdddd4444ccc]ccc]ccc	chr8:141635402-141635673(-)$1	271	219	259	16.4102
e[ggggggg!!ccc[bbmmmmbbcccggggggg]eeeeeE	chr1:22263246-22263538(-)$1	292	4	44	14.0714
=========="""cccooooooccc]=============H	chr14:100064917-100065199(-)$1	282	93	133	18.0818
b!!a[iiiiiiiiicccmmmmccc4444iiiiiiiii22a	chr20:31170621-31170857(+)$1	236	39	79	17.1052
ggggggg"""bb!!cccmmmmcccbb]gggggggffffff	chr9:138909161-138909472(-)$1	311	21	61	15.2035
dbb!!dddd[a[eeeeemmmmeeeee333a]dddd]bb]d	chr21:44395427-44395667(+)$1	240	31	71	13.2145
##ffffff[a"""ddddllldddd4444a]ffffffeeee	chr14:105249991-105250201(-)$1	210	94	134	13.7294
=========[bb[bboooooobb]bb22===========B	chr6:134274587-134274862(+)$1	275	174	214	14.9415
!!===========[cccmmmmccc===========333ee	chr1:19206684-19206952(-)$1	268	159	199	18.8749
a"""a[ccc[a!!ddddmmmmdddd22accca]adddddd	chr9:127268840-127269162(-)$1	322	248	288	15.2001
gggggg[bbgggggggooooooggggggg]bb]ggggggg	chr2:73510953-73511211(-)$1	258	155	195	12.9979
=="""bb[bb####ddddllldddd333bb]bb4444===	chr22:32022365-32022623(-)$1	258	52	92	14.5552
cca[ccc[bb[a"""bboooooobb333abbccc]a]ccc	chr17:21192647-21192947(+)$1	300	185	225	13.6083
=========[a!!cccammmma]ccc22a===========	chr16:4662380-4662646(-)$1	266	121	161	19.7011
==========[ddddoooooodddd===========ffff	chr2:238492172-238492460(-)$1	288	107	147	16.4204
c[bb[eeeee[a!!cccmmmmccc22aeeeee]bb]ccc2	chr2:178077717-178077970(+)$1	253	88	128	13.2398
iiiii[bb####eeeeemmmmeeeee333bbiiiiiiiii	chr19:5092446-5092696(+)$1	250	209	249	17.6724
ffff[eeeee"""ddddmmmmddddeeeeeffffff]bbe	chr17:76164929-76165165(+)$1	236	109	149	13.0502
gggg::ccc####ddddmmmmdddd22ccc==========	chr19:13261415-13261706(+)$1	291	74	114	16.1567
:==========!!ddddmmmmdddd==========::ggg	chr11:70472018-70472264(-)$1	246	8	48	15.7281
ggggggg[bb[bbddddllldddd]bb333bbggggggg]	chr13:113549167-113549438(+)$1	271	102	142	13.2426
!eeeeeccc[ccc[cccmmmmccc]ccc]ccc4444eeee	chr14:100043169-100043460(-)$1	291	75	115	14.1495
ggggggg[bb!!a[cccmmmmccca22bbgggggggffff	chr11:842829-843068(+)$1	239	26	66	15.5326
fffff[ccc"""ccc[ammmma]cccccc]ffffffbb]b	chr11:832976-833274(+)$1	298	184	224	14.0014
!!ccc[ccc!!a!!cccmmmmccc22a22ccc]ccc4444	chr11:68848324-68848606(+)$1	282	50	90	16.5293
eee[===========oooooo===========22eeeee:	chr10:124134364-124134612(+)$1	248	206	246	13.3876
===!!a[gggggggcccmmmmccc22ggggggg]a22===	chr11:65625259-65625545(-)$1	286	199	239	15.7486
b[ggggggg"""eeeeeooooooeeeee]ggggggg]bbc	chr1:200708675-200708945(+)$1	270	46	86	14.3026
iiii"""ccc!!ddddoooooodddd]ccciiiiiiiii2	chr19:19516942-19517202(+)$1	260	82	122	15.6343
#iiiiiiiii[ccc[bbmmmmbbccc]iiiiiiiii333g	chr17:59474515-59474769(-)$1	254	63	103	17.4474
=========####ddddmmmmdddd333============	chr21:46708235-46708514(+)$1	279	172	212	21.0751
ccc[ccc[eeeee[cccmmmmccc]eeeee]ccc]ccc]d	chr4:3513037-3513329(-)$1	292	137	177	13.2210
iiiiiiii####eeeeemmmmeeeee22iiiiiiiiiEEE	chr16:2803062-2803284(+)$1	222	4	44	14.9361
a[iiiiiiiii####bbnnnnnbb333iiiiiiiii]a]d	chr4:2538963-2539213(+)$1	250	39	79	15.0930
ii!!eeeee!!ccc!!bbmmmmbb333ccc]eeeee]iii	chr5:173043246-173043507(-)$1	261	92	132	13.5666
###eeeee####eeeeemmmmeeeee333eeeee333eee	chr9:137250773-137251035(+)$1	262	57	97	15.6820
$$$eeeee[ccc[ddddmmmmddddccc]eeeee333eee	chr1:9650916-9651258(+)$1	342	50	90	13.4730
iiiiiiii[cccccc[bblllbb]ccc]ccciiiiiiiii	chr13:92000499-92000767(+)$1	268	45	85	14.6911
iiiiiiii]bbccccccmmmmccc]cccdddd[a[eeeee	chr3:100428660-100428952(+)$1	292	156	196	13.6083

#otherMatches

#Seq PSSM
GCUGGGCGGGGGGUCUGCUGGGCGGGGCAGGAACAGUAGG	chr8:145020689-145020985(-)$1	296	121	161	14.0707
GUCCUGGGACUUCCCCCUGUGGUGGGGUUGUUGGGGAAAG	chr10:104408997-104409261(+)$1	264	73	113	13.6400
GCGCGUGGCCUUUGCGCGUCUGUGUACCCGUCUGCAGCUU	chr4:1241215-1241463(-)$1	248	21	61	16.4937
gggcgggcgggcggcgcgcugugugggccgagcccgcgcg	chr2:47402944-47403221(-)$1	277	195	235	13.5975
AAGCGGCUGAGCCCAGGCAGACCUGGGGGGCGGCUGGGGG	chr7:2672513-2672765(+)$1	252	115	155	13.9502
CAGGCGGCCGCCUGCAGGGCCCUGCAAGCCGCCGGAGCCG	chr2:231902837-231903078(+)$1	241	28	68	13.4766
AGGGCCACCAUGUUUCCCAUGGGUCACCCAUGGUGGCCUU	chr22:19159939-19160191(+)$1	252	134	174	15.2887
GGACUGAGCCGGCUGAACCCCCAGCCUGUUGGACUUGGUC	chr1:21995411-21995734(-)$1	323	205	245	15.2040
CUCCCAGCAUGUGAGUUGCAGGGGUCAGGCUGGGAGCUUG	chr16:1405675-1405909(+)$1	234	155	195	17.5450
cgcgccgcaaugggccggccgcgcuccgcggggcgcgggg	chr21:45285275-45285553(+)$1	278	85	125	16.1433
CGCCGGGCAGAGACCUGCGGCCAGGGCGUGUCCCGUGUGC	chr4:1341007-1341260(+)$1	253	77	117	15.4341
UGGGAGCUUGCUGCAGCUUCAGGUGAGUUUGUUCCCAAGC	chr16:583955-584211(+)$1	256	21	61	14.4151
GGCCCCUUGGGCAUGGCCAGGUGAGCUCAGGGGGUGCCUG	chr22:50739243-50739515(-)$1	272	106	146	15.4360
ggcgggcggaucaccugaggucaggaguuugaggccagcc	chr8:141635402-141635673(-)$1	271	219	259	16.4102
GACUCUggcccgggacggcggcgcccgccggggaccccgg	chr1:22263246-22263538(-)$1	292	4	44	14.0714
ggcuuggagugguggugcggugacuugcucuagguccugu	chr14:100064917-100065199(-)$1	282	93	133	18.0818
UGGCAGGGUGGGGAGGGCUGACCCAUACUCCCCAUCUGGG	chr20:31170621-31170857(+)$1	236	39	79	17.1052
UCUUCACCCUGGAACCCUGCUGGGCUUGUGAGGACCCCUG	chr9:138909161-138909472(-)$1	311	21	61	15.2035
CCCAGGGCCGCUCGCUGACGGCAGUGUUUGGGGCCGGGUG	chr21:44395427-44395667(+)$1	240	31	71	13.2145
AUGGGGGUGUGAGAGUUAGGGACUGAAGAGGCCCCCUGGG	chr14:105249991-105250201(-)$1	210	94	134	13.7294
CUGAAGAGGACCGGGCGAUAUUUGGGGAUCUCUUUAGGGA	chr6:134274587-134274862(+)$1	275	174	214	14.9415
CACUUCGGGUGUUAUCUGGGUGGAGAUGCCUGGAGGCAGC	chr1:19206684-19206952(-)$1	268	159	199	18.8749
GAUAGAGGGAGAAGGGCCUGAGCCCAGCCCCCACCCAACC	chr9:127268840-127269162(-)$1	322	248	288	15.2001
CCUGUCGCUCCCUGAGCCAGGUUUUGGGGCGGGGGCGGGC	chr2:73510953-73511211(-)$1	258	155	195	12.9979
AGCUUCUGAGGAGGCCUGGAGCAGGGAGCUGGGUAUUUUG	chr22:32022365-32022623(-)$1	258	52	92	14.5552
AGCAUGGAGGACACAGCAUUGUGGCAGGGCCCCACGACUG	chr17:21192647-21192947(+)$1	300	185	225	13.6083
CUUUGGGGCACAGCUGCUGCUGACAGAGGGUCUUGGGGUC	chr16:4662380-4662646(-)$1	266	121	161	19.7011
CCCACUCUGGGUCUCUGUGAUGGGGCCGGGGUGGGAGGCU	chr2:238492172-238492460(-)$1	288	107	147	16.4204
CCUUGGAGGCGCGGCUUGGUCGGGGAGGCCUCGGGAGGGA	chr2:178077717-178077970(+)$1	253	88	128	13.2398
CUGGCAUCAGAGGAGCGGGUCUGCUUACGGGGUCAGGCAG	chr19:5092446-5092696(+)$1	250	209	249	17.6724
GGGGUGUCCGGAUCUCCGCAGGGAGCGGGCCCCUGCCUCG	chr17:76164929-76165165(+)$1	236	109	149	13.0502
CAGGGUCCCGAGUGUCAGGUUUGGCUAGGGUCUGGGGGAG	chr19:13261415-13261706(+)$1	291	74	114	16.1567
UCCGUUGCCAGCUGAGUUGUGACUCUUGGCAACGGUUUCU	chr11:70472018-70472264(-)$1	246	8	48	15.7281
GGAGGGUAGCCUGGGGUCGGGCCCACAUCUGCAUCUUUCA	chr13:113549167-113549438(+)$1	271	102	142	13.2426
ACUCCCCAGGCCUCCAGCCAGCUGUGGGACUGAUCAGGGA	chr14:100043169-100043460(-)$1	291	75	115	14.1495
CCGCUUGACUGACAGCUGCGCGGCGGGAGCGGGCGGCGCG	chr11:842829-843068(+)$1	239	26	66	15.5326
CCGGGAGGUUCCGGGAGGCCGCACCCACCGCCUGGCCCAG	chr11:832976-833274(+)$1	298	184	224	14.0014
GGGAUGCCAAGCggggcuugggucagggauggggucaggg	chr11:68848324-68848606(+)$1	282	50	90	16.5293
GGCAGCGGGAGGGGGCGGCGUCUUCUUCCCGUGGGUCCCC	chr10:124134364-124134612(+)$1	248	206	246	13.3876
CCCACCCGCUGGUGCGCCCGCGCGGACACCGGCCGCGGGG	chr11:65625259-65625545(-)$1	286	199	239	15.7486
GGCGCCGCCACAUUCCUAUGCCCGGGAgcggcggcggcgg	chr1:200708675-200708945(+)$1	270	46	86	14.3026
GCCCCGAGGCGGCCCGGGCACGUGGGGGCCGGGCGGGGGU	chr19:19516942-19517202(+)$1	260	82	122	15.6343
Aggccccggggggcgccucgcgggccgcccggggcuggag	chr17:59474515-59474769(-)$1	254	63	103	17.4474
GGUGCCCCCAACCCUGGAGCCCCGGCGAGGGGGCACCCGG	chr21:46708235-46708514(+)$1	279	172	212	21.0751
CCAUUAUCCUGAGAGCCUUAAGGUACUcaguguguuggug	chr4:3513037-3513329(-)$1	292	137	177	13.2210
GCGUUCGCAGCCGCCUGUACUCGGGUUCGCGAGCGCCCUU	chr16:2803062-2803284(+)$1	222	4	44	14.9361
GAUGCUGCGGGCGGGCGGAUAACGGGUCCUGCGGCGCUGC	chr4:2538963-2539213(+)$1	250	39	79	15.0930
GGAACUGGCGCGGUGGGCGGCGGCGGAACUAGCCAGGCCU	chr5:173043246-173043507(-)$1	261	92	132	13.5666
CCAGUUCUGGAAGGCUCAACAGGGUCCAGGGAGCAUUCAU	chr9:137250773-137251035(+)$1	262	57	97	15.6820
AGGUUUUGAAUGACCCUCGGGAGGGCAUGUAAGGAGAGCU	chr1:9650916-9651258(+)$1	342	50	90	13.4730
CUCGGGGAGAGGACGUGCGAGGCCCGUGCCUUCUccgggg	chr13:92000499-92000767(+)$1	268	45	85	14.6911
CCCUGGCUGCGGUGGCCAGGAGGCGCGCCUGGGGGGCUCC	chr3:100428660-100428952(+)$1	292	156	196	13.6083

#DB
((((..(....(.(((((...))))).)..)..)))))))	chr8:145020689-145020985(-)$1	1	121	161	14.0707
.((((..(((..(((((....).))))..))).))))...	chr10:104408997-104409261(+)$1	1	73	113	13.6400
(((((.(((...(((((....)))))...)))))).))).	chr4:1241215-1241463(-)$1	1	21	61	16.4937
)))))))))(((.(((((((((((((((...)))))))))	chr2:47402944-47403221(-)$1	1	195	235	13.5975
.(((.(((...((((((....)))))).))).)))...))	chr7:2672513-2672765(+)$1	1	115	155	13.9502
(.((((((....(((((....))))).)))))))))))))	chr2:231902837-231903078(+)$1	1	28	68	13.4766
((((((((((((...((....)).....))))))))))))	chr22:19159939-19160191(+)$1	1	134	174	15.2887
(((((((((((((((......)))))....)).)))))))	chr1:21995411-21995734(-)$1	1	205	245	15.2040
((((((((...(((.((....)).))).))))))))).))	chr16:1405675-1405909(+)$1	1	155	195	17.5450
((((((.(..((((.((....)).)))).).)))))))))	chr21:45285275-45285553(+)$1	1	85	125	16.1433
(((((((((....((((....))))...)).)))).))))	chr4:1341007-1341260(+)$1	1	77	117	15.4341
(((((((..(((.((.(....).)))))..))))))).))	chr16:583955-584211(+)$1	1	21	61	14.4151
.(((((((((((.(.((...)).)))))))))))))))).	chr22:50739243-50739515(-)$1	1	106	146	15.4360
(((.(((...(((((((....))))....))).))).)))	chr8:141635402-141635673(-)$1	1	219	259	16.4102
(.(((((((..(((.((....)))))))))))).)))))(	chr1:22263246-22263538(-)$1	1	4	44	14.0714
((((((((((...(((......))).))))))))))))))	chr14:100064917-100065199(-)$1	1	93	133	18.0818
(..(.((((((((((((....)))....)))))))))..)	chr20:31170621-31170857(+)$1	1	39	79	17.1052
(((((((...((..(((....))))).)))))))))))))	chr9:138909161-138909472(-)$1	1	21	61	15.2035
(((..((((.(.(((((....)))))...).)))).)).)	chr21:44395427-44395667(+)$1	1	31	71	13.2145
..((((((.(...((((...))))....).))))))))))	chr14:105249991-105250201(-)$1	1	94	134	13.7294
(((((((((.((.((......)).))..))))))))))))	chr6:134274587-134274862(+)$1	1	174	214	14.9415
..(((((((((((.(((....))))))))))))))...))	chr1:19206684-19206952(-)$1	1	159	199	18.8749
(...(.(((.(..((((....))))..))))).)))))))	chr9:127268840-127269162(-)$1	1	248	288	15.2001
((((((.(((((((((......))))))).)).)))))))	chr2:73510953-73511211(-)$1	1	155	195	12.9979
((...((.((....((((...))))...)).))....)))	chr22:32022365-32022623(-)$1	1	52	92	14.5552
(((.(((.((.(...((......))...)))))).).)))	chr17:21192647-21192947(+)$1	1	185	225	13.6083
(((((((((.(..((((....).)))..))))))))))))	chr16:4662380-4662646(-)$1	1	121	161	19.7011
((((((((((.((((......)))))))))))))))((((	chr2:238492172-238492460(-)$1	1	107	147	16.4204
(.((.(((((.(..(((....)))..)))))).)).))).	chr2:178077717-178077970(+)$1	1	88	128	13.2398
(((((.((....(((((....)))))...)))))))))))	chr19:5092446-5092696(+)$1	1	209	249	17.6724
((((.(((((...((((....))))))))))))))).)))	chr17:76164929-76165165(+)$1	1	109	149	13.0502
))))..(((....((((....))))..)))((((((((((	chr19:13261415-13261706(+)$1	1	74	114	16.1567
.((((((((((..((((....))))))))))))))..(((	chr11:70472018-70472264(-)$1	1	8	48	15.7281
(((((((.((.((((((...)))).))...))))))))).	chr13:113549167-113549438(+)$1	1	102	142	13.2426
.((((((((.(((.(((....))).))).)))....))))	chr14:100043169-100043460(-)$1	1	75	115	14.1495
(((((((.((..(.(((....))))..)))))))))))))	chr11:842829-843068(+)$1	1	26	66	15.5326
(((((.(((...(((.(....).)))))).)))))))).)	chr11:832976-833274(+)$1	1	184	224	14.0014
..(((.(((..(..(((....)))..)..))).)))....	chr11:68848324-68848606(+)$1	1	50	90	16.5293
(((.(((((((((((......)))))))))))..))))).	chr10:124134364-124134612(+)$1	1	206	246	13.3876
(((..(.((((((((((....)))..))))))).)..)))	chr11:65625259-65625545(-)$1	1	199	239	15.7486
(.(((((((...(((((......))))).))))))).))(	chr1:200708675-200708945(+)$1	1	46	86	14.3026
((((...(((..((((......)))).)))))))))))).	chr19:19516942-19517202(+)$1	1	82	122	15.6343
.(((((((((.(((.((....))))).)))))))))...)	chr17:59474515-59474769(-)$1	1	63	103	17.4474
(((((((((....((((....))))...))))))))))))	chr21:46708235-46708514(+)$1	1	172	212	21.0751
(((.(((.(((((.(((....))).))))).))).))).)	chr4:3513037-3513329(-)$1	1	137	177	13.2210
((((((((....(((((....)))))..)))))))))(((	chr16:2803062-2803284(+)$1	1	4	44	14.9361
(.(((((((((....((.....))...))))))))).).)	chr4:2538963-2539213(+)$1	1	39	79	15.0930
((..(((((..(((..((....))...))).))))).)))	chr5:173043246-173043507(-)$1	1	92	132	13.5666
...(((((....(((((....)))))...)))))...)))	chr9:137250773-137251035(+)$1	1	57	97	15.6820
...(((((.(((.((((....))))))).)))))...)))	chr1:9650916-9651258(+)$1	1	50	90	13.4730
((((((((.((((((.((...)).))).))))))))))))	chr13:92000499-92000767(+)$1	1	45	85	14.6911
)))))))).))((((((....))).)))((((.(.(((((	chr3:100428660-100428952(+)$1	1	156	196	13.6083

#PSSM
= : 0.21	g : 0.15	i : 0.13	c : 0.11	! : 0.07	# : 0.05	$ : 0.03	e : 0.03	b : 0.03	a : 0.03	f : 0.03	" : 0.01	d : 0.01	: : 0.01	
= : 0.24	g : 0.15	i : 0.15	c : 0.09	[ : 0.09	! : 0.05	# : 0.03	f : 0.03	e : 0.03	d : 0.01	b : 0.01	" : 0.01	$ : 0.01	
= : 0.24	g : 0.19	i : 0.15	c : 0.09	f : 0.07	! : 0.03	b : 0.03	" : 0.03	e : 0.03	d : 0.01	a : 0.01	# : 0.01	$ : 0.01	
= : 0.23	g : 0.17	i : 0.15	f : 0.07	[ : 0.07	c : 0.05	! : 0.05	e : 0.05	d : 0.03	" : 0.03	a : 0.01	b : 0.01	
= : 0.24	i : 0.13	g : 0.13	c : 0.09	[ : 0.07	e : 0.07	! : 0.05	f : 0.05	d : 0.03	" : 0.03	a : 0.01	: : 0.01	
= : 0.24	i : 0.13	g : 0.13	e : 0.11	[ : 0.09	c : 0.07	! : 0.03	f : 0.03	d : 0.03	b : 0.01	: : 0.01	a : 0.01	" : 0.01	
= : 0.23	c : 0.19	i : 0.13	g : 0.11	e : 0.09	[ : 0.05	f : 0.03	d : 0.03	b : 0.03	a : 0.01	! : 0.01	" : 0.01	
= : 0.23	c : 0.17	i : 0.13	[ : 0.09	e : 0.09	b : 0.05	g : 0.05	f : 0.03	" : 0.03	# : 0.01	a : 0.01	! : 0.01	d : 0.01	
= : 0.21	c : 0.15	b : 0.13	# : 0.09	" : 0.07	e : 0.07	g : 0.05	i : 0.05	[ : 0.05	! : 0.03	d : 0.01	] : 0.01	
# : 0.15	" : 0.13	= : 0.13	c : 0.11	b : 0.11	[ : 0.09	! : 0.07	i : 0.05	e : 0.05	g : 0.03	a : 0.01	
# : 0.17	" : 0.15	! : 0.11	c : 0.11	= : 0.09	[ : 0.09	b : 0.05	a : 0.05	e : 0.03	i : 0.03	g : 0.03	d : 0.01	
c : 0.21	# : 0.17	! : 0.11	" : 0.11	a : 0.07	= : 0.07	b : 0.05	e : 0.03	d : 0.03	g : 0.03	f : 0.01	i : 0.01	[ : 0.01	
e : 0.17	c : 0.17	[ : 0.11	! : 0.11	" : 0.09	# : 0.09	d : 0.07	= : 0.03	g : 0.03	f : 0.01	i : 0.01	b : 0.01	a : 0.01	
d : 0.26	e : 0.17	c : 0.17	[ : 0.07	b : 0.05	! : 0.05	" : 0.03	g : 0.03	# : 0.03	f : 0.01	a : 0.01	i : 0.01	= : 0.01	
d : 0.26	c : 0.26	e : 0.17	[ : 0.09	b : 0.05	" : 0.03	f : 0.01	g : 0.01	= : 0.01	# : 0.01	! : 0.01	
d : 0.24	c : 0.23	e : 0.15	b : 0.15	o : 0.07	[ : 0.05	= : 0.01	f : 0.01	g : 0.01	! : 0.01	
d : 0.21	b : 0.19	c : 0.19	e : 0.15	o : 0.13	a : 0.07	= : 0.01	f : 0.01	
m : 0.65	o : 0.17	l : 0.05	b : 0.03	e : 0.01	= : 0.01	d : 0.01	n : 0.01	
m : 0.67	o : 0.17	l : 0.11	= : 0.01	n : 0.01	
m : 0.67	o : 0.17	l : 0.11	= : 0.01	n : 0.01	
m : 0.67	o : 0.17	l : 0.05	d : 0.03	= : 0.01	b : 0.01	n : 0.01	
d : 0.23	c : 0.19	e : 0.15	b : 0.15	o : 0.09	a : 0.07	= : 0.03	f : 0.01	n : 0.01	m : 0.01	
d : 0.24	c : 0.21	b : 0.17	e : 0.15	] : 0.09	= : 0.03	o : 0.03	f : 0.01	g : 0.01	
c : 0.28	d : 0.26	e : 0.17	] : 0.07	b : 0.07	= : 0.03	f : 0.01	5 : 0.01	a : 0.01	g : 0.01	
d : 0.24	e : 0.17	c : 0.13	= : 0.07	b : 0.07	] : 0.07	2 : 0.05	4 : 0.03	3 : 0.03	f : 0.01	5 : 0.01	g : 0.01	a : 0.01	
e : 0.21	c : 0.19	= : 0.11	3 : 0.11	2 : 0.11	d : 0.05	4 : 0.05	b : 0.05	f : 0.01	5 : 0.01	] : 0.01	g : 0.01	
3 : 0.19	= : 0.13	c : 0.13	2 : 0.11	] : 0.09	4 : 0.07	g : 0.05	e : 0.05	d : 0.03	a : 0.03	f : 0.01	5 : 0.01	b : 0.01	
3 : 0.17	c : 0.15	= : 0.13	2 : 0.09	4 : 0.07	g : 0.07	e : 0.07	] : 0.05	a : 0.03	i : 0.03	f : 0.01	5 : 0.01	d : 0.01	b : 0.01	
= : 0.17	c : 0.13	3 : 0.09	i : 0.09	2 : 0.07	] : 0.07	g : 0.07	b : 0.05	a : 0.05	e : 0.05	4 : 0.03	l : 0.01	f : 0.01	d : 0.01	
c : 0.21	= : 0.19	i : 0.09	g : 0.09	e : 0.09	b : 0.07	] : 0.05	2 : 0.03	a : 0.03	l : 0.01	f : 0.01	4 : 0.01	3 : 0.01	d : 0.01	
= : 0.21	c : 0.15	i : 0.11	] : 0.11	g : 0.11	b : 0.09	f : 0.07	e : 0.05	a : 0.01	l : 0.01	d : 0.01	
= : 0.24	i : 0.15	c : 0.13	g : 0.11	f : 0.07	b : 0.07	e : 0.07	d : 0.05	2 : 0.01	] : 0.01	a : 0.01	
= : 0.23	i : 0.15	] : 0.13	g : 0.13	c : 0.07	f : 0.07	e : 0.05	2 : 0.03	d : 0.03	b : 0.01	4 : 0.01	[ : 0.01	
= : 0.24	i : 0.15	g : 0.13	c : 0.13	d : 0.05	f : 0.05	e : 0.05	] : 0.03	a : 0.03	4 : 0.03	b : 0.01	2 : 0.01	
= : 0.24	i : 0.15	g : 0.11	c : 0.09	d : 0.07	f : 0.07	e : 0.05	4 : 0.03	] : 0.03	3 : 0.03	b : 0.01	a : 0.01	[ : 0.01	
= : 0.19	i : 0.15	g : 0.11	] : 0.07	3 : 0.07	c : 0.07	e : 0.07	f : 0.07	d : 0.05	4 : 0.03	a : 0.01	: : 0.01	2 : 0.01	
= : 0.17	i : 0.11	] : 0.11	g : 0.09	3 : 0.09	e : 0.09	d : 0.05	c : 0.05	f : 0.05	b : 0.03	4 : 0.03	h : 0.01	: : 0.01	2 : 0.01	
= : 0.21	e : 0.13	g : 0.09	c : 0.09	3 : 0.07	b : 0.07	i : 0.07	f : 0.05	] : 0.03	d : 0.03	h : 0.01	2 : 0.01	4 : 0.01	E : 0.01	a : 0.01	
= : 0.21	e : 0.17	g : 0.09	c : 0.09	] : 0.07	i : 0.07	d : 0.05	f : 0.05	3 : 0.03	b : 0.03	h : 0.01	2 : 0.01	4 : 0.01	E : 0.01	
= : 0.17	e : 0.15	g : 0.09	d : 0.09	c : 0.07	] : 0.05	f : 0.05	i : 0.05	E : 0.03	2 : 0.03	3 : 0.01	h : 0.01	H : 0.01	a : 0.01	B : 0.01	b : 0.01	4 : 0.01	: : 0.01	

#score	789.9820892684447
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_UTR_m2_run1.txt

#BEAR
""ccc[cccqqqqqqqqccc444	chr9:116997782-116998031(+)$1	249	154	177	7.1330
::gggggggpppppppggggggg	chr1:20234805-20235177(+)$1	372	178	201	13.0375
))gggggggpppppppggggggg	chr17:29632093-29632382(+)$1	289	137	160	13.7513
gggg[ddddpppppppdddd22g	chr16:1359636-1359911(+)$1	275	115	138	12.7214
JJgggggggpppppppggggggg	chr7:155570957-155571217(+)$1	260	41	64	12.0908
dbb[eeeeepppppppeeeee]b	chr9:117026537-117026778(+)$1	241	35	58	12.7254
"""ddddrrrrrrrrrdddd]cc	chr7:100424769-100425119(-)$1	350	187	210	10.4017
ddd!!ddddpppppppdddd]dd	chr1:20237057-20237316(+)$1	259	163	186	12.5734
==========nnnnn========	chr20:57467342-57467612(+)$1	270	132	155	6.7155
''eeeeerrrrrrrrreeeeebb	chr2:242757627-242757937(+)$1	310	57	80	9.3300
==========nnnnn========	chr20:23356303-23356691(-)$1	388	299	322	6.7155
F:a[eeeeepppppppeeeee]a	chr7:104752932-104753200(-)$1	268	205	228	12.3343
b[a[a[cccpppppppccca]a]	chr8:13133750-13134023(-)$1	273	57	80	13.9861
!!gggggggpppppppggggggg	chr7:73007579-73007833(-)$1	254	8	31	14.7070
cccffffffpppppppffffff:	chr12:6875621-6875864(+)$1	243	32	55	11.6324
iiiii[cccqqqqqqqqccciii	chr16:1360052-1360315(+)$1	263	173	196	7.5773
iiiiiiiiipppppppiiiiiii	chr14:39736370-39736642(+)$1	272	38	61	14.5527
d[eeeeerrrrrrrrreeeeedd	chr12:133404788-133405045(-)$1	257	79	102	10.4178
iiiiiiiiipppppppiiiiiii	chr14:39736267-39736545(+)$1	278	141	164	14.5527
""gggggggpppppppggggggg	chr11:3013049-3013291(-)$1	242	209	232	14.7062
dd[ffffffpppppppffffff3	chr1:20237212-20237475(+)$1	263	221	244	12.5764
:dddd[cccpppppppccc333d	chr1:27022434-27022784(+)$1	350	139	162	12.9649
e:gggggggpppppppggggggg	chr12:133405120-133405347(-)$1	227	202	225	13.5859
cceeeeebbpppppppbb]eeee	chr5:73935791-73936095(-)$1	304	81	104	11.8721
ddd"""cccpppppppccc333d	chr16:70695584-70695822(-)$1	238	72	95	13.7459
dddd[cccrrrrrrrrrccc]dd	chr2:223726303-223726582(+)$1	279	224	247	10.7120

#otherMatches

#Seq PSSM
UUGCAUGAGAUUUUCCCCUCCCC	chr9:116997782-116998031(+)$1	249	154	177	7.1330
UUGUUUCCUGACAGUGGGGAGAU	chr1:20234805-20235177(+)$1	372	178	201	13.0375
UACGGGCAGAUGGUAGUUGUCUG	chr17:29632093-29632382(+)$1	289	137	160	13.7513
CGCCGGGGCUGCGGCCGCCCGAG	chr16:1359636-1359911(+)$1	275	115	138	12.7214
UUAGAUCCUGCACCCAGGGGUCU	chr7:155570957-155571217(+)$1	260	41	64	12.0908
UGGUUCUCCGCCCGAGGGAGACC	chr9:117026537-117026778(+)$1	241	35	58	12.7254
CCCGGAGGGACCCCAACUCCAGC	chr7:100424769-100425119(-)$1	350	187	210	10.4017
GAGCUGGCUGGGAGGGAGCCUCU	chr1:20237057-20237316(+)$1	259	163	186	12.5734
CUCGCCAAAGGGAGGCUUUGGCG	chr20:57467342-57467612(+)$1	270	132	155	6.7155
GAGGGCACCUCCUUCCUGCCCGC	chr2:242757627-242757937(+)$1	310	57	80	9.3300
GGGACUACAGGUGCACUGUAGUC	chr20:23356303-23356691(-)$1	388	299	322	6.7155
UUUGCUGGCUUGUGGUGCCAGGA	chr7:104752932-104753200(-)$1	268	205	228	12.3343
CGGAGUACCGAGGCAUGGUCGCG	chr8:13133750-13134023(-)$1	273	57	80	13.9861
AAAGAGGAGGAUGCUGUUUCUCU	chr7:73007579-73007833(-)$1	254	8	31	14.7070
UGCGGGUCUCCGCUCCAGACCCA	chr12:6875621-6875864(+)$1	243	32	55	11.6324
GUUUUCGGUGCCUUAAAACCAAA	chr16:1360052-1360315(+)$1	263	173	196	7.5773
GUGCGGGUCGGGCUCGGACCUGC	chr14:39736370-39736642(+)$1	272	38	61	14.5527
CGACUUGUCUUCAUUCCAGGUGG	chr12:133404788-133405045(-)$1	257	79	102	10.4178
GUGCGGGUCGGGCUCGGACCUGC	chr14:39736267-39736545(+)$1	278	141	164	14.5527
GGGGCUGUGGCGGUUACACGGCC	chr11:3013049-3013291(-)$1	242	209	232	14.7062
CAAUUUCUCUAAUUCUGAGAAAC	chr1:20237212-20237475(+)$1	263	221	244	12.5764
CGCCCCCCUCAUUCCCAGGCAAG	chr1:27022434-27022784(+)$1	350	139	162	12.9649
AUGCUUGUCUGCGCCCGACGAGC	chr12:133405120-133405347(-)$1	227	202	225	13.5859
CUAGAGGGCAAGGGGAGCUCUUC	chr5:73935791-73936095(-)$1	304	81	104	11.8721
UCAGGAUGUGGUGGGAAUAGAGU	chr16:70695584-70695822(-)$1	238	72	95	13.7459
GACUGUCGUUUGGGGUUUGAGAG	chr2:223726303-223726582(+)$1	279	224	247	10.7120

#DB
..(((.(((........)))...	chr9:116997782-116998031(+)$1	1	154	177	7.1330
..(((((((.......)))))))	chr1:20234805-20235177(+)$1	1	178	201	13.0375
..(((((((.......)))))))	chr17:29632093-29632382(+)$1	1	137	160	13.7513
((((.((((.......))))..)	chr16:1359636-1359911(+)$1	1	115	138	12.7214
(((((((((.......)))))))	chr7:155570957-155571217(+)$1	1	41	64	12.0908
)((.(((((.......))))).)	chr9:117026537-117026778(+)$1	1	35	58	12.7254
...((((.........)))).))	chr7:100424769-100425119(-)$1	1	187	210	10.4017
(((..((((.......)))).))	chr1:20237057-20237316(+)$1	1	163	186	12.5734
((((((((((.....))))))))	chr20:57467342-57467612(+)$1	1	132	155	6.7155
..(((((.........)))))))	chr2:242757627-242757937(+)$1	1	57	80	9.3300
((((((((((.....))))))))	chr20:23356303-23356691(-)$1	1	299	322	6.7155
(.(.(((((.......))))).)	chr7:104752932-104753200(-)$1	1	205	228	12.3343
(.(.(.(((.......)))).).	chr8:13133750-13134023(-)$1	1	57	80	13.9861
..(((((((.......)))))))	chr7:73007579-73007833(-)$1	1	8	31	14.7070
)))((((((.......)))))).	chr12:6875621-6875864(+)$1	1	32	55	11.6324
(((((.(((........))))))	chr16:1360052-1360315(+)$1	1	173	196	7.5773
(((((((((.......)))))))	chr14:39736370-39736642(+)$1	1	38	61	14.5527
(.(((((.........)))))))	chr12:133404788-133405045(-)$1	1	79	102	10.4178
(((((((((.......)))))))	chr14:39736267-39736545(+)$1	1	141	164	14.5527
..(((((((.......)))))))	chr11:3013049-3013291(-)$1	1	209	232	14.7062
((.((((((.......)))))).	chr1:20237212-20237475(+)$1	1	221	244	12.5764
.((((.(((.......)))...)	chr1:27022434-27022784(+)$1	1	139	162	12.9649
).(((((((.......)))))))	chr12:133405120-133405347(-)$1	1	202	225	13.5859
(((((((((.......)).))))	chr5:73935791-73936095(-)$1	1	81	104	11.8721
(((...(((.......)))...)	chr16:70695584-70695822(-)$1	1	72	95	13.7459
((((.(((.........))).))	chr2:223726303-223726582(+)$1	1	224	247	10.7120

#PSSM
d : 0.23	" : 0.11	i : 0.11	: : 0.07	= : 0.07	c : 0.07	) : 0.03	g : 0.03	J : 0.03	' : 0.03	F : 0.03	b : 0.03	! : 0.03	e : 0.03	
d : 0.19	" : 0.11	: : 0.11	i : 0.11	= : 0.07	[ : 0.07	c : 0.07	) : 0.03	g : 0.03	J : 0.03	b : 0.03	' : 0.03	! : 0.03	
g : 0.26	d : 0.15	e : 0.11	i : 0.11	c : 0.07	= : 0.07	a : 0.07	b : 0.03	" : 0.03	[ : 0.03	
g : 0.26	[ : 0.11	d : 0.11	e : 0.11	i : 0.11	= : 0.07	f : 0.07	c : 0.03	! : 0.03	" : 0.03	
g : 0.23	e : 0.19	i : 0.11	[ : 0.07	d : 0.07	= : 0.07	f : 0.07	c : 0.03	! : 0.03	a : 0.03	" : 0.03	
g : 0.23	e : 0.19	[ : 0.15	d : 0.11	= : 0.07	f : 0.07	i : 0.07	" : 0.03	c : 0.03	
c : 0.23	g : 0.23	e : 0.19	d : 0.11	= : 0.07	f : 0.07	i : 0.07	
c : 0.23	g : 0.23	r : 0.11	d : 0.07	e : 0.07	= : 0.07	f : 0.07	i : 0.07	b : 0.03	
g : 0.23	c : 0.19	r : 0.15	d : 0.07	e : 0.07	= : 0.07	f : 0.07	i : 0.07	b : 0.03	
p : 0.69	r : 0.15	q : 0.07	= : 0.07	
p : 0.69	r : 0.15	q : 0.07	n : 0.07	
p : 0.69	r : 0.15	q : 0.07	n : 0.07	
p : 0.69	r : 0.15	q : 0.07	n : 0.07	
p : 0.69	r : 0.15	q : 0.07	n : 0.07	
p : 0.69	r : 0.15	q : 0.07	n : 0.07	
p : 0.69	r : 0.15	q : 0.07	= : 0.07	
g : 0.23	e : 0.15	d : 0.11	c : 0.11	q : 0.07	= : 0.07	f : 0.07	i : 0.07	b : 0.03	r : 0.03	
c : 0.23	g : 0.23	e : 0.15	d : 0.11	= : 0.07	f : 0.07	i : 0.07	b : 0.03	
c : 0.23	g : 0.23	e : 0.15	d : 0.11	= : 0.07	f : 0.07	i : 0.07	] : 0.03	
g : 0.23	e : 0.19	c : 0.11	d : 0.11	= : 0.07	f : 0.07	i : 0.07	3 : 0.07	a : 0.03	
g : 0.23	e : 0.19	] : 0.15	i : 0.11	= : 0.07	f : 0.07	3 : 0.07	4 : 0.03	2 : 0.03	
g : 0.23	d : 0.11	i : 0.11	] : 0.07	= : 0.07	f : 0.07	3 : 0.07	4 : 0.03	2 : 0.03	c : 0.03	b : 0.03	a : 0.03	e : 0.03	
g : 0.26	d : 0.19	i : 0.11	b : 0.07	= : 0.07	4 : 0.03	c : 0.03	a : 0.03	] : 0.03	: : 0.03	3 : 0.03	e : 0.03	

#score	307.1205310085807
#seq	26
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_UTR_m3_run2.txt

#BEAR
d"""ffffff[aqqqqqqqqa]ffffff333d	chr9:117073226-117073444(+)$1	218	11	43	10.8965
[ccc[dddd[bbrrrrrrrrrbb]dddd]ccc	chr17:76968289-76968551(-)$1	262	208	240	11.8881
[ccc[eeeee[ddddqqqqqqqqdddd>>>>>	chr9:116999160-116999366(+)$1	206	28	60	9.3794
dddd[dddd!!bbqqqqqqqqbbdddd]dddd	chr2:11484516-11484760(-)$1	244	56	88	10.7353
ddd[ggggggguuuuuuuuuuuuggggggg]d	chr9:117002399-117002642(+)$1	243	190	222	14.8234
""eeeee[ddddtttttttttttdddd22eee	chr9:117032907-117033160(+)$1	253	137	169	13.8257
[a[a[ffffffxxxxxxxxxxxxxxxffffff	chr1:44003767-44004005(+)$1	238	151	183	12.4596
iiiiibb[eeeeerrrrrrrrreeeee]bb]i	chr21:46915235-46915447(+)$1	212	84	116	10.9919
e[a!!ggggggguuuuuuuuuuuuggggggg2	chr17:79804207-79804428(-)$1	221	67	99	14.7264
bccc[ffffffuuuuuuuuuuuuffffff333	chr9:117027601-117027841(+)$1	240	112	144	14.1585
ccc[bb[eeeeesssssssssseeeee]bb22	chr9:96009765-96010121(+)$1	356	285	317	14.0037
iiiiiiiii[ddddqqqqqqqqdddd]iiiii	chr6:167369869-167370109(-)$1	240	102	134	10.8443
dddd[gggggggssssssssssgggggggddd	chr9:117062261-117062503(+)$1	242	146	178	14.4523
eee!!eeeeexxxxxxxxxxxxxxxeeeee]e	chr9:117015063-117015311(+)$1	248	177	209	12.9814
dddd"""ccc[cccqqqqqqqqccc4444ccc	chr9:116997787-116998016(+)$1	229	144	176	11.3544
gggg"""ccc[aqqqqqqqqa]ccc22ggggg	chr20:17608143-17608393(-)$1	250	159	191	11.4524
####dddd[cccrrrrrrrrrcccdddd333b	chr9:117005724-117005941(+)$1	217	151	183	11.9740
[dddd"""bb[bbqqqqqqqqbb]bb333ddd	chr16:2802588-2802878(+)$1	290	231	263	10.1813
!!dddd[a[a[bbqqqqqqqqbb]a]adddd2	chr16:3767355-3767612(-)$1	257	85	117	10.7446
d!!eeeee[ccctttttttttttccc]eeeee	chr6:43109569-43109847(+)$1	278	90	122	14.4067
!iiiiiiiii[ddddqqqqqqqqdddd]iiii	chr6:167369764-167370029(-)$1	265	21	53	10.5416
bbhhhhhhhh[assssssssssa]hhhhhhhh	chr9:128003449-128003675(-)$1	226	90	122	12.5889
eeccceeeee[assssssssssaeeeeeJJJJ	chr17:27047493-27047697(+)$1	204	149	181	10.5149
[ccc[a[bb[bbssssssssssbb]bb]a]cc	chr7:2671530-2671798(+)$1	268	46	78	14.1197
ggggggdddd[aqqqqqqqqa]dddd]ggggg	chr8:57906013-57906363(-)$1	350	223	255	11.1753
$$$$$ccc[cccssssssssssccc]ccc333	chr9:116831879-116832089(-)$1	210	165	197	14.4687
EEccc!!bbcccrrrrrrrrrccc]bb22ccc	chr11:67810657-67810935(+)$1	278	241	273	9.5135
Cgggggggwwwwwwwwwwwwwwggggggg:::	chr9:116997816-116998032(+)$1	216	2	34	12.1444
eeccceeeee[assssssssssaeeeeeJJJJ	chr17:27047497-27047725(+)$1	228	145	177	10.5149

#otherMatches

#Seq PSSM
CCCCGUGGCCUCUCAGCUCUGCGGCCACCCCG	chr9:117073226-117073444(+)$1	218	11	43	10.8965
AGCUGCAGUUCAACCUGUCCCUGUACUGGAGC	chr17:76968289-76968551(-)$1	262	208	240	11.8881
GAGGACUGGGCGGCUGUUCACCUGGCCAUUUC	chr9:116999160-116999366(+)$1	206	28	60	9.3794
gccggcggcgaccauggcagcgggccggcggc	chr2:11484516-11484760(-)$1	244	56	88	10.7353
CAGACAGCUCUGCAGAAACCACAGGGGCUGGC	chr9:117002399-117002642(+)$1	243	190	222	14.8234
GACCUGAUGGGCUGAAGGUAAGUGCCCUUUUA	chr9:117032907-117033160(+)$1	253	137	169	13.8257
gagugaccggggugaagaagcaaaGACUCGGU	chr1:44003767-44004005(+)$1	238	151	183	12.4596
GAUGCCAGCCUUGGAUUUGGCAUGAGGGUGAG	chr21:46915235-46915447(+)$1	212	84	116	10.9919
CUGACGGCAGAGAGGAUCACAGAGUUCUGCCA	chr17:79804207-79804428(-)$1	221	67	99	14.7264
CCCUCAGGCCCCCCAGGCACCAAGGGCCUCCC	chr9:117027601-117027841(+)$1	240	112	144	14.1585
AGGAGCCGGAGGCCGACCAGCACCUCCUGCCA	chr9:96009765-96010121(+)$1	356	285	317	14.0037
ACGGCGGCUGCAGCGUGGAGGAGCUGGGGUCG	chr6:167369869-167370109(-)$1	240	102	134	10.8443
GGACUCCCACGGCUCACUGUUCCUGUGGGGUC	chr9:117062261-117062503(+)$1	242	146	178	14.4523
UCAAACCACUGUCAGAUAAGGGUUAGGUggcu	chr9:117015063-117015311(+)$1	248	177	209	12.9814
GGUAAUUGCAUGAGAUUUUCCCCUCCCCCUGC	chr9:116997787-116998016(+)$1	229	144	176	11.3544
CGGAGAACUCCCAGCUCACAGAGAGAAUCCGU	chr20:17608143-17608393(-)$1	250	159	191	11.4524
AAGAGGGGAUCCUACAUAUCUGGGCCCCAAGU	chr9:117005724-117005941(+)$1	217	151	183	11.9740
CCUCGGAGGCGGCGGGCGGAGGCGGCGGGUGA	chr16:2802588-2802878(+)$1	290	231	263	10.1813
GCGCUCUGGGAGUACGACAUGGCGCGCGAGCU	chr16:3767355-3767612(-)$1	257	85	117	10.7446
UUCUUCCAGUUUUUAUCACCUUCAAAGUGGAA	chr6:43109569-43109847(+)$1	278	90	122	14.4067
GACGGCGGCUGCAGCGUGGAGGAGCUGGGGUC	chr6:167369764-167370029(-)$1	265	21	53	10.5416
GGGGUGUUUCGCGAGUGUGAGAGGGAAGCGCC	chr9:128003449-128003675(-)$1	226	90	122	12.5889
AGGGUGGCCCACUGCAGUUCUUGGGGCCGGAA	chr17:27047493-27047697(+)$1	204	149	181	10.5149
ggcggcggcggCGAACAAAGAGGCGGCGGGCG	chr7:2671530-2671798(+)$1	268	46	78	14.1197
CCCCCAUGGGCAUCCGCCUUUCCCCACUGGGG	chr8:57906013-57906363(-)$1	350	223	255	11.1753
aGGCACGCUGCACACUUGAUCCUGCUGCGGGG	chr9:116831879-116832089(-)$1	210	165	197	14.4687
GCCUGCCGCGGCUUCCUCAUUGCCAGCUUCAG	chr11:67810657-67810935(+)$1	278	241	273	9.5135
GGGAGGCUUCCAGAACCCACGUGGCCUCCAUU	chr9:116997816-116998032(+)$1	216	2	34	12.1444
AGGGUGGCCCACUGCAGUUCUUGGGGCCGGAA	chr17:27047497-27047725(+)$1	228	145	177	10.5149

#DB
(...((((((.(........).))))))...)	chr9:117073226-117073444(+)$1	1	11	43	10.8965
.(((.((((.((.........)).)))).)))	chr17:76968289-76968551(-)$1	1	208	240	11.8881
.(((.(((((.((((........)))).....	chr9:116999160-116999366(+)$1	1	28	60	9.3794
((((.((((..((........)))))).))))	chr2:11484516-11484760(-)$1	1	56	88	10.7353
(((.(((((((............))))))).)	chr9:117002399-117002642(+)$1	1	190	222	14.8234
..(((((.((((...........))))..)))	chr9:117032907-117033160(+)$1	1	137	169	13.8257
.(.(.((((((...............))))))	chr1:44003767-44004005(+)$1	1	151	183	12.4596
(((((((.(((((.........))))).)).)	chr21:46915235-46915447(+)$1	1	84	116	10.9919
(.(..(((((((............))))))).	chr17:79804207-79804428(-)$1	1	67	99	14.7264
((((.((((((............))))))...	chr9:117027601-117027841(+)$1	1	112	144	14.1585
(((.((.(((((..........))))).))..	chr9:96009765-96010121(+)$1	1	285	317	14.0037
(((((((((.((((........)))).)))))	chr6:167369869-167370109(-)$1	1	102	134	10.8443
((((.(((((((..........))))))))))	chr9:117062261-117062503(+)$1	1	146	178	14.4523
(((..(((((...............))))).)	chr9:117015063-117015311(+)$1	1	177	209	12.9814
((((...(((.(((........)))....)))	chr9:116997787-116998016(+)$1	1	144	176	11.3544
((((...(((.(........).)))..)))))	chr20:17608143-17608393(-)$1	1	159	191	11.4524
....((((.(((.........)))))))...)	chr9:117005724-117005941(+)$1	1	151	183	11.9740
.((((...((.((........)).))...)))	chr16:2802588-2802878(+)$1	1	231	263	10.1813
..((((.(.(.((........)).).))))).	chr16:3767355-3767612(-)$1	1	85	117	10.7446
(..(((((.(((...........))).)))))	chr6:43109569-43109847(+)$1	1	90	122	14.4067
.(((((((((.((((........)))).))))	chr6:167369764-167370029(-)$1	1	21	53	10.5416
))((((((((.(..........).))))))))	chr9:128003449-128003675(-)$1	1	90	122	12.5889
)))))(((((.(..........))))))))))	chr17:27047493-27047697(+)$1	1	149	181	10.5149
.(((.(.((.((..........)).)).).))	chr7:2671530-2671798(+)$1	1	46	78	14.1197
((((((((((.(........).)))).)))))	chr8:57906013-57906363(-)$1	1	223	255	11.1753
.....(((.(((..........))).)))...	chr9:116831879-116832089(-)$1	1	165	197	14.4687
))(((..(((((.........))).))..)))	chr11:67810657-67810935(+)$1	1	241	273	9.5135
((((((((..............)))))))...	chr9:116997816-116998032(+)$1	1	2	34	12.1444
)))))(((((.(..........))))))))))	chr17:27047497-27047725(+)$1	1	145	177	10.5149

#PSSM
d : 0.20	[ : 0.17	e : 0.13	i : 0.06	b : 0.06	g : 0.06	! : 0.06	" : 0.03	c : 0.03	# : 0.03	$ : 0.03	E : 0.03	C : 0.03	
c : 0.17	d : 0.17	i : 0.10	e : 0.10	g : 0.10	" : 0.06	! : 0.06	a : 0.03	[ : 0.03	# : 0.03	b : 0.03	$ : 0.03	E : 0.03	
c : 0.27	d : 0.20	i : 0.10	g : 0.10	e : 0.06	" : 0.03	[ : 0.03	a : 0.03	# : 0.03	! : 0.03	h : 0.03	$ : 0.03	
c : 0.24	d : 0.17	i : 0.10	g : 0.10	[ : 0.06	e : 0.06	! : 0.06	" : 0.03	a : 0.03	# : 0.03	h : 0.03	$ : 0.03	
[ : 0.24	g : 0.10	i : 0.10	d : 0.10	c : 0.10	e : 0.06	! : 0.06	" : 0.06	f : 0.03	b : 0.03	h : 0.03	$ : 0.03	
e : 0.20	g : 0.17	d : 0.13	f : 0.10	" : 0.10	b : 0.06	i : 0.06	h : 0.03	a : 0.03	c : 0.03	! : 0.03	
e : 0.20	d : 0.13	g : 0.13	f : 0.10	[ : 0.10	" : 0.10	i : 0.06	b : 0.03	h : 0.03	c : 0.03	! : 0.03	
e : 0.20	d : 0.13	g : 0.13	f : 0.10	c : 0.10	[ : 0.06	i : 0.06	b : 0.06	" : 0.03	a : 0.03	h : 0.03	
e : 0.20	d : 0.13	[ : 0.13	f : 0.10	g : 0.10	b : 0.10	i : 0.06	c : 0.06	h : 0.03	w : 0.03	
e : 0.20	c : 0.20	f : 0.10	[ : 0.10	g : 0.10	d : 0.06	! : 0.03	b : 0.03	a : 0.03	i : 0.03	h : 0.03	w : 0.03	
[ : 0.37	c : 0.13	g : 0.10	b : 0.06	d : 0.06	f : 0.06	e : 0.06	! : 0.03	x : 0.03	w : 0.03	
a : 0.20	b : 0.17	c : 0.17	d : 0.13	u : 0.06	x : 0.06	e : 0.06	g : 0.06	w : 0.03	
s : 0.24	q : 0.10	r : 0.10	d : 0.10	b : 0.10	u : 0.10	t : 0.06	x : 0.06	e : 0.03	c : 0.03	w : 0.03	
s : 0.24	q : 0.20	r : 0.13	d : 0.10	u : 0.10	t : 0.06	x : 0.06	c : 0.03	w : 0.03	
q : 0.27	s : 0.24	r : 0.13	u : 0.10	d : 0.06	t : 0.06	x : 0.06	w : 0.03	
q : 0.34	s : 0.24	r : 0.13	u : 0.10	t : 0.06	x : 0.06	w : 0.03	
q : 0.34	s : 0.24	r : 0.13	u : 0.10	t : 0.06	x : 0.06	w : 0.03	
q : 0.34	s : 0.24	r : 0.13	u : 0.10	t : 0.06	x : 0.06	w : 0.03	
q : 0.34	s : 0.24	r : 0.13	u : 0.10	t : 0.06	x : 0.06	w : 0.03	
q : 0.34	s : 0.24	r : 0.13	u : 0.10	t : 0.06	x : 0.06	w : 0.03	
q : 0.24	s : 0.24	r : 0.13	a : 0.10	u : 0.10	t : 0.06	x : 0.06	w : 0.03	
s : 0.24	b : 0.13	q : 0.13	] : 0.10	u : 0.10	t : 0.06	x : 0.06	c : 0.06	r : 0.03	w : 0.03	
b : 0.17	c : 0.17	u : 0.10	a : 0.10	q : 0.06	t : 0.06	x : 0.06	e : 0.06	d : 0.06	g : 0.06	f : 0.03	
d : 0.20	c : 0.20	] : 0.13	e : 0.13	g : 0.10	f : 0.06	x : 0.06	u : 0.03	b : 0.03	
d : 0.27	g : 0.13	e : 0.13	c : 0.13	f : 0.06	x : 0.06	] : 0.06	b : 0.03	a : 0.03	h : 0.03	
d : 0.27	e : 0.17	g : 0.13	b : 0.10	f : 0.06	] : 0.06	x : 0.03	4 : 0.03	2 : 0.03	c : 0.03	h : 0.03	
d : 0.20	e : 0.17	g : 0.13	f : 0.10	] : 0.10	b : 0.06	4 : 0.03	2 : 0.03	3 : 0.03	a : 0.03	h : 0.03	c : 0.03	
g : 0.20	] : 0.17	e : 0.13	f : 0.10	d : 0.10	2 : 0.06	> : 0.03	i : 0.03	4 : 0.03	3 : 0.03	h : 0.03	c : 0.03	
g : 0.20	3 : 0.10	d : 0.06	2 : 0.06	f : 0.06	b : 0.06	i : 0.06	e : 0.06	J : 0.06	] : 0.03	> : 0.03	4 : 0.03	h : 0.03	a : 0.03	c : 0.03	
3 : 0.13	d : 0.13	g : 0.13	c : 0.10	e : 0.10	b : 0.06	i : 0.06	J : 0.06	> : 0.03	f : 0.03	h : 0.03	] : 0.03	: : 0.03	
3 : 0.13	c : 0.13	d : 0.13	] : 0.10	g : 0.10	e : 0.06	i : 0.06	J : 0.06	> : 0.03	f : 0.03	2 : 0.03	h : 0.03	: : 0.03	
d : 0.17	c : 0.13	e : 0.10	i : 0.10	2 : 0.10	3 : 0.06	g : 0.06	J : 0.06	> : 0.03	f : 0.03	b : 0.03	h : 0.03	: : 0.03	

#score	351.8633627505138
#seq	29
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_UTR_m1_run1.txt

#BEAR
===[bb!!ccc####ccc[bbnnnnnbb22ccc333ccc	chr1:2160051-2160335(+)$1	284	133	172	13.6151
cc[a[ggggggg"""ccc[cccmmmmccc]ccc4444gg	chr19:42788109-42788379(+)$1	270	99	138	12.5267
dddeeeee"""dddd"""cccmmmmccc22dddd333ee	chr7:1007846-1008163(-)$1	317	205	244	12.9141
gggggg[ccc[ccc[cccoooooocccccc]cccggggg	chrX:153589616-153589848(-)$1	232	60	99	15.6345
eeee!!ccc!!bba[ddddoooooodddd]a]bb22ccc	chr16:89726033-89726288(+)$1	255	162	201	14.0399
iiiiii[dddd[ccc"""bbnnnnnbb333ccc22dddd	chr7:1887640-1887902(-)$1	262	99	138	13.9613
ggg:dddd[a!!ccc[ddddnnnnndddd]ccc]a]ddd	chr3:49050532-49050811(+)$1	279	161	200	12.1657
d[bbgggggggdddd!!cccnnnnnccc22dddd]gggg	chr22:50013550-50013848(-)$1	298	17	56	13.5287
cccccc!!ccc####a!!annnnna22a4444ccc]ccc	chr9:134350447-134350722(+)$1	275	14	53	14.3539
=====[bb[a[bb[a[cccoooooocccabba]bb]===	chr1:182360246-182360488(-)$1	242	24	63	14.8849
!!ggggggg[ccc####ddddllldddd22ccc]ggggg	chr19:15348962-15349227(-)$1	265	142	181	13.9933
eeeeecccffffff!!cccoooooocccffffff]ccc]	chr16:87732033-87732282(-)$1	249	152	191	14.4291
eeeccc"""ccc!!dddd[ccclllccc]dddd22ccc3	chr22:49829734-49829999(-)$1	265	31	70	12.7910
gg!!eeeeeffffff[cccooooooccc]ffffff]eee	chr8:144679188-144679513(-)$1	325	218	257	14.0145
eeeee[bb"""ccc!!cccooooooccc]cccbb]eeee	chr19:2151279-2151530(-)$1	251	58	97	16.0827
ii[ccc[a[dddd####cccnnnnnccc]dddd]a]ccc	chr19:2425608-2425862(-)$1	254	142	181	15.2590
ggg!!a[ccc[ccc"""ddddllldddd333ccc]ccca	chr7:1006174-1006476(-)$1	302	47	86	14.8017
[ffffffeeeee[ccc[cccnnnnnccc22ccceeeee]	chr16:1741690-1741952(+)$1	262	2	41	12.5718
a[cccbb####ccc"""bboooooobbccc4444bb22c	chr1:144931970-144932202(-)$1	232	132	171	15.2556
ddd!!eeeee[a[cccrrrrrrrrrccc22a]eeeee22	chr12:124430793-124431092(-)$1	299	241	280	11.4955
ccc[eeeee!!ccc!!cccqqqqqqqqccc]ccc4444e	chr12:104697385-104697719(+)$1	334	170	209	11.5598
ffff[ccc[a[ccc!!ddddnnnnndddd22ccca]ccc	chr19:45166584-45166853(+)$1	269	174	213	13.6472
ggggggg!!eeeee!!cccnnnnnccc]eeeee22gggg	chr19:55558657-55558908(+)$1	251	22	61	13.2855
dddd[ccc"""bb[ddddcccmmmmccc333dddd]bb4	chr1:1028060-1028323(-)$1	263	63	102	11.7728
gggg$$$$$eeeee"""cccnnnnnccc22eeeeegggg	chr4:761082-761346(-)$1	264	21	60	13.7025
ddd!!a!!a[ccc"""cccooooooccc0000000000c	chr8:41525732-41526003(-)$1	271	141	180	14.1909
dddd[a!!dddd####cccoooooocccdddd22adddd	chr19:2425971-2426224(-)$1	253	81	120	15.6350
!bbccc!!a"""cccrrrrrrrrrccc333a22ccc]bb	chr16:89007255-89007544(-)$1	289	91	130	11.5018
dd[ddddccc[ccc[bb[bboooooobb]bb4444cccc	chr16:89347730-89347972(-)$1	242	131	170	13.1508
eeeee####dddd####ccclllccc4444ddddeeeee	chr8:144671309-144671573(-)$1	264	152	191	12.6898
gggeeeee[bb[ccc[bboooooobbccc]bbeeeeedd	chr19:1470173-1470441(-)$1	268	158	197	12.1823
""dddd####ggggggg[aooooooa]ggggggg333dd	chr4:759950-760238(-)$1	288	67	106	15.1850
bb[dddd[ccc$$$$$cccooooooccc4444ccc]ddd	chr19:2270062-2270392(+)$1	330	80	119	15.7407
igggggggeeeee"""cccooooooccc22eeeee8888	chr19:2270266-2270595(+)$1	329	252	291	14.8393
dddd!!ccc!!hhhhhhhhoooooohhhhhhhh22ccc3	chr2:191513878-191514187(+)$1	309	77	116	12.4608
!!ggggggg"""cccssssssssssccc4444ggggggg	chr19:16187671-16187996(+)$1	325	222	261	11.7781
iiiiii[dddd[ccc"""bbnnnnnbb333ccc22dddd	chr7:1887566-1887817(-)$1	251	14	53	13.9613
c"""a[dddd!!gggggggooooooggggggg333dddd	chr19:18548014-18548297(-)$1	283	200	239	14.5726
a::ccc!!a[gggggggaooooooa]ggggggga22ccc	chr19:41770829-41771098(+)$1	269	47	86	12.6390
a[cccbb####ccc"""bboooooobbccc4444bb22c	chr1:144931889-144932150(-)$1	261	80	119	15.2556
========[cccgggggggooooooggggggg22ccc]=	chr19:58991274-58991529(-)$1	255	206	245	14.9021
dd[ccc[ccc[ccc!!cccooooooccc22ccccccccc	chr14:105714210-105714511(-)$1	301	101	140	18.1920
b!!eeeee"""ccc!!cccooooooccc22ccc]eeeee	chr11:74976691-74976945(-)$1	254	14	53	17.5550
f!!==========="""cccmmmmccc===========2	chr4:763952-764205(-)$1	253	171	210	13.9139
bb[ggggggg####cccqqqqqqqqccc333gggggggb	chr19:1205699-1205976(+)$1	277	101	140	11.4362
eeeeffffff[eeeeecccooooooccc]eeeeefffff	chr9:139715781-139716021(+)$1	240	124	163	12.9972
:::ccc####eeeee[cccooooooccceeeee22cccF	chr20:25843563-25843825(-)$1	262	111	150	12.4450
cc[bba[ccccccgggggggooooooggggggg]ccc22	chr19:55558713-55558934(+)$1	221	167	206	12.9951
ccc[ggggggg####ddddoooooodddd]ggggggg]c	chr4:1229695-1229951(-)$1	256	1	40	14.9517
ccc[ggggggg####ddddoooooodddd]ggggggg]c	chr4:1229845-1230094(-)$1	249	144	183	14.9517
bbccc"""bb[a[eeeeeooooooeeeeea]bb333ccc	chr17:7477044-7477320(+)$1	276	43	82	12.3183
a[dddd####dddd[a[bboooooobba]dddd4444dd	chr10:17271170-17271440(-)$1	270	146	185	14.8789
h####ccc####ccc"""bbmmmmbb333ccc4444ccc	chr19:1472446-1472699(-)$1	253	55	94	13.3166
dddd[a[dddd"""ccc[ammmma]ccc22dddda]ddd	chr1:245026251-245026534(-)$1	283	152	191	12.2218

#otherMatches

#Seq PSSM
ccgggggagccggagcgCACCAUGGAGGCGGCGGCAGGC	chr1:2160051-2160335(+)$1	284	133	172	13.6151
uggcggggcggggaggcgguggugguucggcgcggggcU	chr19:42788109-42788379(+)$1	270	99	138	12.5267
CCUCAGGCUCUGGGAAACAGGCUGCCCUCGUCCCUCUGC	chr7:1007846-1008163(-)$1	317	205	244	12.9141
GCUUCCUGCCCCGUGAGGAAGGGCCCUAUGAGGUGGAGG	chrX:153589616-153589848(-)$1	232	60	99	15.6345
CUUCACACUGACACGCUUGUAGGAUCAAGGGCUGAAAGU	chr16:89726033-89726288(+)$1	255	162	201	14.0399
GUUGUUGAGGGAGGGAGAGUGGCCUGCGGACCCAGCCCU	chr7:1887640-1887902(-)$1	262	99	138	13.9613
CAUGCCAUGGUGGCUAUGUGUAUACCACAGGGCGUGAUG	chr3:49050532-49050811(+)$1	279	161	200	12.1657
gacggcagacugagagugucacagagaccaucucaaguc	chr22:50013550-50013848(-)$1	298	17	56	13.5287
GGCAGAAAAGGAUGAGGACGAAGAGAACGAUGCCUCUCU	chr9:134350447-134350722(+)$1	275	14	53	14.3539
GCGCUGUGGAUGGAGUGGCGGUGCGGUCCCCUGUGGAGC	chr1:182360246-182360488(-)$1	242	24	63	14.8849
CAGGGCCUGGCCCUCCUGCAUGCUAUGCCCGGGGCAGGC	chr19:15348962-15349227(-)$1	265	142	181	13.9933
UUCGCUCAGGGACACCUGCCUCUGUGCAUGUCUCAUGGU	chr16:87732033-87732282(-)$1	249	152	191	14.4291
CAGUCCACGGGAGAGAGUGGCUGAGAGUGGCUUAGUCCA	chr22:49829734-49829999(-)$1	265	31	70	12.7910
GGGACGGGGGCGCCGGGAGCACUGUCUCACGGCGCAUCC	chr8:144679188-144679513(-)$1	325	218	257	14.0145
GCCGCCGCCCUGGCCUGGGAGCUUgccccgccgcagcgg	chr19:2151279-2151530(-)$1	251	58	97	16.0827
CAGCCUCUGCCUGCUCUGCCGCCGAGGCCCGGGGAUGGG	chr19:2425608-2425862(-)$1	254	142	181	15.2590
aaacucaugaaugguuuauuucuggaauuuuccacuuag	chr7:1006174-1006476(-)$1	302	47	86	14.8017
UUCAGUCUGAGCAUCCUGCCCUGUUGGCCUGGAGCUCAG	chr16:1741690-1741952(+)$1	262	2	41	12.5718
UGCUCCGGGAGCCCAGUCUGCUAAAAGGGGAGGACGUUG	chr1:144931970-144932202(-)$1	232	132	171	15.2556
cuggagcccuggggguaggagaagggccagcgagggugg	chr12:124430793-124431092(-)$1	299	241	280	11.4955
ACACGCUGGGAGGGCCGUUACCUCAGAGAUACCCGUGGC	chr12:104697385-104697719(+)$1	334	170	209	11.5598
AUAAAGGAACAUUGGUUGCUUUGGUGGCACGUAAGCUCC	chr19:45166584-45166853(+)$1	269	174	213	13.6472
GGGUCCUGGGCCCUGGGCUGAGAAAGCAGGGGUGGAGGG	chr19:55558657-55558908(+)$1	251	22	61	13.2855
cgggcuguguugcccaggugggucuccaacuccugagcu	chr1:1028060-1028323(-)$1	263	63	102	11.7728
GGUUGGCUUCUUGGAAAGCCUGAAUGGUGGCCAAGGACC	chr4:761082-761346(-)$1	264	21	60	13.7025
GCCGACAGGGACCGGAGGCAGCAAGGCCAAGAAGAGCAG	chr8:41525732-41526003(-)$1	271	141	180	14.1909
GGCCUGCUGCUCCUGUUGCUUUCACGUAGAGUCUCGGCC	chr19:2425971-2426224(-)$1	253	81	120	15.6350
CGCCGGAUCCCCCGGACCCCCCGACCGUAAGUGCCGUGU	chr16:89007255-89007544(-)$1	289	91	130	11.5018
GCCCACCCCUACGUCGGUGCUAUCCUGCCCCAGCUACGA	chr16:89347730-89347972(-)$1	242	131	170	13.1508
CCGGCGGGGCCGCAACAUCUUAGGGAACAAGCGGGCCGG	chr8:144671309-144671573(-)$1	264	152	191	12.6898
GCAGGCCCAUGGGGCAGCCAGACCGCGCCGCAGGGCCGG	chr19:1470173-1470441(-)$1	268	158	197	12.1823
UCGUGUCAGAAGGUGACUCAGAACCGUGUUGCCUGGAGC	chr4:759950-760238(-)$1	288	67	106	15.1850
GGGCGCAGACUGGGAAUUCGGUUUGGAGGAAGGGUGUGC	chr19:2270062-2270392(+)$1	330	80	119	15.7407
CUGGGGGUGGCGCACUCCGACAGCCCGGCAGCGCCCUGG	chr19:2270266-2270595(+)$1	329	252	291	14.8393
CCUCGAUGGGAGCGGGGGCGUCCCGGCUCCUGCAGCCGC	chr2:191513878-191514187(+)$1	309	77	116	12.4608
UUGUGGGGGAGAAUGAGGAUGAAAACGUGGAGCUUCCAU	chr19:16187671-16187996(+)$1	325	222	261	11.7781
GUUGUUGAGGGAGGGAGAGUGGCCUGCGGACCCAGCCCU	chr7:1887566-1887817(-)$1	251	14	53	13.9613
UUAAGGUGCCGGAGGUCUCAGGGGAGGGGCCUGGGGGCA	chr19:18548014-18548297(-)$1	283	200	239	14.5726
GAUCCUGACACUCAGUGCAGGGGGGACACUGGGGGAGGG	chr19:41770829-41771098(+)$1	269	47	86	12.6390
UGCUCCGGGAGCCCAGUCUGCUAAAAGGGGAGGACGUUG	chr1:144931889-144932150(-)$1	261	80	119	15.2556
GUGCCUCUGGCUGGUGGGGCGGUAACCCUGCCCGGGUGG	chr19:58991274-58991529(-)$1	255	206	245	14.9021
uuagucgcgcgcugaaggucacacagccggcgggugggc	chr14:105714210-105714511(-)$1	301	101	140	18.1920
UGGCCUUGGAAUUGGACUUGAGAUGGGGAGCAGACAGGG	chr11:74976691-74976945(-)$1	254	14	53	17.5550
GAGCGUACACAUAUGUAGCAUGCAUGUGUGUGUGUGCGG	chr4:763952-764205(-)$1	253	171	210	13.9139
UGUCGGGCGCGGAAGGGGGAGGCGGCCCGGGGCGCCCGC	chr19:1205699-1205976(+)$1	277	101	140	11.4362
GGCCGCGGGACGGACGUGGAUGGCGCCGCCGUUCUCUCG	chr9:139715781-139716021(+)$1	240	124	163	12.9972
ccggacgguguugguuggggugagucucgccaaaagucg	chr20:25843563-25843825(-)$1	262	111	150	12.4450
UGAGGGAGGGGUCCAGCCUCACCUGGGAGGCUGUGGCAG	chr19:55558713-55558934(+)$1	221	167	206	12.9951
UGGAGAGGCCUAUAACCUGCAGGAACGGGCGGGCCUUGC	chr4:1229695-1229951(-)$1	256	1	40	14.9517
UGGAGAGGCCUAUAACCUGCAGGAACGGGCGGGCCUUGC	chr4:1229845-1230094(-)$1	249	144	183	14.9517
CAUCCGGGCAACGCGAGGGGGGGGCUUCGGCUGGAGGGA	chr17:7477044-7477320(+)$1	276	43	82	12.3183
GGAGCGAGAGUGGCAGAGGACUGGACCCCGCCGAGGGCG	chr10:17271170-17271440(-)$1	270	146	185	14.8789
CGGCAGGGGAUGGAGAAGGCGAAAGUGAGCUCAGGACUC	chr19:1472446-1472699(-)$1	253	55	94	13.3166
gcggggagcgcgggcccgcgggggaggggagcgccgccg	chr1:245026251-245026534(-)$1	283	152	191	12.2218

#DB
(((.((..(((....(((.((.....))..)))...)))	chr1:2160051-2160335(+)$1	1	133	172	13.6151
((.(.(((((((...(((.(((....))).)))....))	chr19:42788109-42788379(+)$1	1	99	138	12.5267
((((((((...((((...(((....)))..))))...))	chr7:1007846-1008163(-)$1	1	205	244	12.9141
((((((.(((.(((.(((......)))))).))))))))	chrX:153589616-153589848(-)$1	1	60	99	15.6345
((((..(((..(((.((((......)))).).))..)))	chr16:89726033-89726288(+)$1	1	162	201	14.0399
((((((.((((.(((...((.....))...)))..))))	chr7:1887640-1887902(-)$1	1	99	138	13.9613
))).((((.(..(((.((((.....)))).))).).)))	chr3:49050532-49050811(+)$1	1	161	200	12.1657
(.(((((((((((((..(((.....)))..)))).))))	chr22:50013550-50013848(-)$1	1	17	56	13.5287
((((((..(((....(..(.....)..)....))).)))	chr9:134350447-134350722(+)$1	1	14	53	14.3539
(((((.((.(.((.(.(((......))))))).)).)))	chr1:182360246-182360488(-)$1	1	24	63	14.8849
..(((((((.(((....((((...))))..))).)))))	chr19:15348962-15349227(-)$1	1	142	181	13.9933
((((((((((((((..(((......))))))))).))).	chr16:87732033-87732282(-)$1	1	152	191	14.4291
)))(((...(((..((((.(((...))).))))..))).	chr22:49829734-49829999(-)$1	1	31	70	12.7910
((..(((((((((((.(((......))).)))))).)))	chr8:144679188-144679513(-)$1	1	218	257	14.0145
(((((.((...(((..(((......))).))))).))))	chr19:2151279-2151530(-)$1	1	58	97	16.0827
((.(((.(.((((....(((.....))).)))).).)))	chr19:2425608-2425862(-)$1	1	142	181	15.2590
(((..(.(((.(((...((((...))))...))).))))	chr7:1006174-1006476(-)$1	1	47	86	14.8017
.(((((((((((.(((.(((.....)))..)))))))).	chr16:1741690-1741952(+)$1	1	2	41	12.5718
(.(((((....(((...((......)))))....))..)	chr1:144931970-144932202(-)$1	1	132	171	15.2556
(((..(((((.(.(((.........)))..).)))))..	chr12:124430793-124431092(-)$1	1	241	280	11.4955
(((.(((((..(((..(((........))).)))....)	chr12:104697385-104697719(+)$1	1	170	209	11.5598
((((.(((.(.(((..((((.....))))..)))).)))	chr19:45166584-45166853(+)$1	1	174	213	13.6472
(((((((..(((((..(((.....))).)))))..))))	chr19:55558657-55558908(+)$1	1	22	61	13.2855
((((.(((...((.(((((((....)))...)))).)).	chr1:1028060-1028323(-)$1	1	63	102	11.7728
((((.....(((((...(((.....)))..)))))))))	chr4:761082-761346(-)$1	1	21	60	13.7025
(((..(..(.(((...(((......)))..........)	chr8:41525732-41526003(-)$1	1	141	180	14.1909
((((.(..((((....(((......)))))))..)))))	chr19:2425971-2426224(-)$1	1	81	120	15.6350
.(((((..(...(((.........)))...)..))).))	chr16:89007255-89007544(-)$1	1	91	130	11.5018
((.(((((((.(((.((.((......)).))....))))	chr16:89347730-89347972(-)$1	1	131	170	13.1508
(((((....((((....(((...)))....)))))))))	chr8:144671309-144671573(-)$1	1	152	191	12.6898
)))(((((.((.(((.((......))))).)))))))((	chr19:1470173-1470441(-)$1	1	158	197	12.1823
..((((....(((((((.(......).)))))))...))	chr4:759950-760238(-)$1	1	67	106	15.1850
((.((((.(((.....(((......)))....))).)))	chr19:2270062-2270392(+)$1	1	80	119	15.7407
(((((((((((((...(((......)))..)))))....	chr19:2270266-2270595(+)$1	1	252	291	14.8393
((((..(((..((((((((......))))))))..))).	chr2:191513878-191514187(+)$1	1	77	116	12.4608
..(((((((...(((..........)))....)))))))	chr19:16187671-16187996(+)$1	1	222	261	11.7781
((((((.((((.(((...((.....))...)))..))))	chr7:1887566-1887817(-)$1	1	14	53	13.9613
(...(.((((..(((((((......)))))))...))))	chr19:18548014-18548297(-)$1	1	200	239	14.5726
)..(((..(.((((((((......).))))))))..)))	chr19:41770829-41771098(+)$1	1	47	86	12.6390
(.(((((....(((...((......)))))....))..)	chr1:144931889-144932150(-)$1	1	80	119	15.2556
((((((((.((((((((((......)))))))..))).)	chr19:58991274-58991529(-)$1	1	206	245	14.9021
((.(((.(((.(((..(((......)))..)))))))))	chr14:105714210-105714511(-)$1	1	101	140	18.1920
(..(((((...(((..(((......)))..))).)))))	chr11:74976691-74976945(-)$1	1	14	53	17.5550
(..(((((((((((...(((....)))))))))))))).	chr4:763952-764205(-)$1	1	171	210	13.9139
((.(((((((....(((........)))...))))))))	chr19:1205699-1205976(+)$1	1	101	140	11.4362
((((((((((.((((((((......))).))))))))))	chr9:139715781-139716021(+)$1	1	124	163	12.9972
...(((....(((((.(((......))))))))..))))	chr20:25843563-25843825(-)$1	1	111	150	12.4450
((.(((.(((((((((((((......))))))).)))..	chr19:55558713-55558934(+)$1	1	167	206	12.9951
(((.(((((((....((((......)))).))))))).)	chr4:1229695-1229951(-)$1	1	1	40	14.9517
(((.(((((((....((((......)))).))))))).)	chr4:1229845-1230094(-)$1	1	144	183	14.9517
(((((...((.(.(((((......)))))).))...)))	chr17:7477044-7477320(+)$1	1	43	82	12.3183
(.((((....((((.(.((......))).))))....))	chr10:17271170-17271440(-)$1	1	146	185	14.8789
(....(((....(((...((....))...)))....)))	chr19:1472446-1472699(-)$1	1	55	94	13.3166
((((.(.((((...(((.(....).)))..))))).)))	chr1:245026251-245026534(-)$1	1	152	191	12.2218

#PSSM
d : 0.18	c : 0.12	g : 0.12	e : 0.11	i : 0.07	a : 0.07	b : 0.07	= : 0.05	! : 0.05	f : 0.03	[ : 0.01	" : 0.01	: : 0.01	h : 0.01	
d : 0.16	g : 0.14	c : 0.11	e : 0.11	[ : 0.07	! : 0.07	b : 0.07	= : 0.05	i : 0.05	f : 0.03	" : 0.03	: : 0.03	# : 0.01	
d : 0.16	g : 0.16	[ : 0.12	c : 0.12	e : 0.11	= : 0.05	! : 0.05	i : 0.03	b : 0.03	f : 0.03	: : 0.03	" : 0.01	# : 0.01	
c : 0.18	e : 0.14	d : 0.14	g : 0.12	[ : 0.07	! : 0.07	= : 0.05	i : 0.03	b : 0.03	f : 0.03	a : 0.01	: : 0.01	" : 0.01	# : 0.01	
c : 0.18	g : 0.16	e : 0.14	[ : 0.09	! : 0.09	d : 0.09	= : 0.05	b : 0.03	i : 0.03	f : 0.03	$ : 0.01	a : 0.01	# : 0.01	
c : 0.20	g : 0.18	e : 0.11	d : 0.09	a : 0.09	b : 0.05	[ : 0.05	! : 0.03	i : 0.03	f : 0.03	= : 0.03	$ : 0.01	# : 0.01	" : 0.01	
g : 0.16	[ : 0.14	! : 0.11	e : 0.11	c : 0.11	d : 0.07	b : 0.07	# : 0.07	" : 0.03	f : 0.03	= : 0.03	$ : 0.01	
c : 0.20	g : 0.14	! : 0.12	e : 0.12	# : 0.11	d : 0.09	b : 0.03	" : 0.03	= : 0.03	a : 0.01	$ : 0.01	[ : 0.01	f : 0.01	
c : 0.18	g : 0.12	# : 0.12	[ : 0.11	" : 0.09	d : 0.09	e : 0.09	a : 0.05	f : 0.03	! : 0.01	$ : 0.01	= : 0.01	b : 0.01	
c : 0.18	d : 0.12	" : 0.11	# : 0.11	g : 0.09	e : 0.09	! : 0.05	a : 0.05	[ : 0.05	f : 0.05	b : 0.03	= : 0.01	
[ : 0.16	c : 0.14	d : 0.12	g : 0.11	" : 0.11	! : 0.09	e : 0.09	# : 0.07	f : 0.03	b : 0.01	= : 0.01	
c : 0.27	# : 0.11	d : 0.11	e : 0.11	g : 0.05	b : 0.05	[ : 0.05	" : 0.05	! : 0.03	f : 0.03	a : 0.03	$ : 0.01	h : 0.01	= : 0.01	
c : 0.37	# : 0.11	d : 0.09	e : 0.09	g : 0.07	b : 0.05	[ : 0.05	" : 0.03	f : 0.03	! : 0.01	$ : 0.01	h : 0.01	= : 0.01	
c : 0.35	# : 0.16	e : 0.09	g : 0.09	" : 0.07	d : 0.05	[ : 0.03	f : 0.03	a : 0.01	! : 0.01	$ : 0.01	h : 0.01	= : 0.01	
c : 0.20	# : 0.14	" : 0.14	! : 0.12	g : 0.09	d : 0.07	[ : 0.07	e : 0.05	a : 0.01	f : 0.01	$ : 0.01	h : 0.01	
" : 0.20	! : 0.14	c : 0.12	d : 0.09	[ : 0.09	g : 0.09	# : 0.07	a : 0.03	e : 0.03	r : 0.01	b : 0.01	$ : 0.01	h : 0.01	s : 0.01	
c : 0.35	" : 0.16	d : 0.12	g : 0.09	# : 0.05	! : 0.03	[ : 0.03	r : 0.03	b : 0.03	h : 0.01	s : 0.01	e : 0.01	
c : 0.42	d : 0.16	" : 0.07	b : 0.07	[ : 0.05	g : 0.05	r : 0.03	! : 0.01	h : 0.01	s : 0.01	a : 0.01	q : 0.01	e : 0.01	
c : 0.40	d : 0.12	b : 0.12	o : 0.07	[ : 0.05	a : 0.05	g : 0.05	r : 0.03	h : 0.01	s : 0.01	q : 0.01	
o : 0.48	c : 0.18	b : 0.09	d : 0.07	n : 0.03	r : 0.03	q : 0.03	s : 0.01	g : 0.01	m : 0.01	
o : 0.51	n : 0.18	c : 0.07	m : 0.05	d : 0.03	r : 0.03	q : 0.03	b : 0.01	l : 0.01	s : 0.01	
o : 0.51	n : 0.20	m : 0.09	l : 0.05	c : 0.03	r : 0.03	q : 0.03	s : 0.01	
o : 0.51	n : 0.20	m : 0.11	l : 0.07	r : 0.03	q : 0.03	s : 0.01	
o : 0.51	n : 0.20	m : 0.09	l : 0.05	r : 0.03	q : 0.03	c : 0.01	s : 0.01	a : 0.01	
o : 0.44	n : 0.16	c : 0.09	m : 0.05	a : 0.03	d : 0.03	q : 0.03	b : 0.03	l : 0.01	r : 0.01	s : 0.01	e : 0.01	] : 0.01	
c : 0.51	d : 0.12	b : 0.12	o : 0.03	g : 0.03	n : 0.01	m : 0.01	2 : 0.01	q : 0.01	a : 0.01	h : 0.01	] : 0.01	e : 0.01	
c : 0.53	b : 0.12	d : 0.12	g : 0.07	2 : 0.01	q : 0.01	4 : 0.01	] : 0.01	h : 0.01	e : 0.01	3 : 0.01	
c : 0.53	d : 0.12	g : 0.09	3 : 0.07	b : 0.03	a : 0.03	] : 0.01	4 : 0.01	h : 0.01	= : 0.01	e : 0.01	
2 : 0.20	3 : 0.12	] : 0.12	c : 0.11	d : 0.11	g : 0.09	4 : 0.07	e : 0.05	a : 0.01	f : 0.01	0 : 0.01	h : 0.01	= : 0.01	
2 : 0.22	] : 0.11	c : 0.11	3 : 0.11	g : 0.09	4 : 0.07	d : 0.07	e : 0.05	b : 0.03	f : 0.03	0 : 0.01	h : 0.01	= : 0.01	a : 0.01	
c : 0.20	d : 0.14	g : 0.12	4 : 0.09	e : 0.09	] : 0.05	a : 0.05	b : 0.05	3 : 0.05	f : 0.03	2 : 0.01	0 : 0.01	h : 0.01	= : 0.01	
c : 0.27	d : 0.16	g : 0.14	4 : 0.11	e : 0.09	] : 0.03	f : 0.03	b : 0.03	a : 0.01	0 : 0.01	2 : 0.01	h : 0.01	= : 0.01	
c : 0.27	d : 0.14	e : 0.12	g : 0.12	4 : 0.07	b : 0.05	2 : 0.05	f : 0.03	] : 0.01	0 : 0.01	h : 0.01	3 : 0.01	= : 0.01	
c : 0.14	2 : 0.14	4 : 0.11	e : 0.11	d : 0.09	] : 0.09	g : 0.09	3 : 0.05	b : 0.05	f : 0.03	0 : 0.01	a : 0.01	= : 0.01	
2 : 0.14	e : 0.12	g : 0.11	c : 0.11	3 : 0.09	4 : 0.09	a : 0.09	] : 0.07	b : 0.05	f : 0.03	d : 0.01	0 : 0.01	= : 0.01	
c : 0.18	g : 0.16	] : 0.16	e : 0.11	3 : 0.07	4 : 0.07	d : 0.07	2 : 0.03	b : 0.03	0 : 0.01	8 : 0.01	= : 0.01	f : 0.01	
c : 0.31	g : 0.16	d : 0.12	e : 0.12	4 : 0.05	3 : 0.03	= : 0.03	2 : 0.03	b : 0.01	0 : 0.01	] : 0.01	8 : 0.01	f : 0.01	
c : 0.27	d : 0.18	g : 0.14	e : 0.11	2 : 0.07	] : 0.05	= : 0.03	b : 0.03	4 : 0.01	0 : 0.01	8 : 0.01	f : 0.01	
c : 0.27	d : 0.18	g : 0.12	e : 0.11	2 : 0.05	= : 0.03	] : 0.03	3 : 0.03	b : 0.03	a : 0.01	4 : 0.01	8 : 0.01	f : 0.01	F : 0.01	

#score	745.1479291688939
#seq	54
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_CDS_m3_run2.txt

#BEAR
"ddddoooooodddde	chr16:57496592-57496823(+)$1	231	87	103	12.4089
eddddoooooodddd:	chr19:38865392-38865650(+)$1	258	138	154	11.5766
[ddddoooooodddd]	chr6:43543449-43543780(-)$1	331	142	158	12.4893
e:cccoooooocccdd	chr15:64679945-64680261(+)$1	316	171	187	9.7308
eeeeeooooooeeeee	chr3:170587845-170588084(-)$1	239	49	65	12.1061
!ddddoooooodddd2	chr3:53925693-53925975(-)$1	282	52	68	12.3134
bbcccooooooccc]b	chr9:111696617-111696910(+)$1	293	160	176	9.3177
[ddddooooooddddc	chr19:13885174-13885487(+)$1	313	183	199	12.3374
[ddddooooooddddb	chrX:48753940-48754242(-)$1	302	227	243	12.0983
[ddddoooooodddd]	chr19:5622494-5622757(-)$1	263	207	223	12.4893
eeeeeooooooeeeee	chr6:139094837-139095141(+)$1	304	65	81	12.1061
eee[aooooooaeeee	chr20:2448266-2448505(-)$1	239	9	25	11.5711
eeeeeooooooeeeee	chr1:68962534-68962888(-)$1	354	249	265	12.1061
eeebboooooobb]ee	chr3:185655534-185655812(-)$1	278	189	205	9.9396
Gddddooooooddddg	chr16:1993001-1993253(-)$1	252	169	185	11.7143
!!cccooooooccc22	chr7:1608808-1609053(-)$1	245	37	53	10.1353
:ddddoooooodddd:	chr18:12703003-12703264(+)$1	261	96	112	10.6152
eeeeeooooooeeeee	chr8:99129158-99129472(-)$1	314	159	175	12.1061
ddcccooooooccc]d	chr10:14881802-14882085(+)$1	283	10	26	10.4506
gcccaooooooa]ccc	chr2:97523524-97523845(-)$1	321	262	278	10.0804
[ddddoooooodddd]	chr7:116502555-116502807(+)$1	252	174	190	12.4893
d!!bboooooobb]dd	chr18:71958996-71959285(-)$1	289	173	189	9.1439
b[cccooooooccc22	chr22:24109923-24110225(-)$1	302	142	158	9.6209
eeeeeooooooeeeee	chr2:84686195-84686409(-)$1	214	5	21	12.1061
[ddddoooooodddd]	chr5:131554140-131554438(-)$1	298	236	252	12.4893
eeeeeooooooeeeee	chr5:82373039-82373301(-)$1	262	180	196	12.1061
gggggooooooggggg	chr10:7837991-7838207(+)$1	216	145	161	9.8884
eeeeeooooooeeeee	chr12:69082639-69082915(+)$1	276	77	93	12.1061
eeeeeooooooeeeee	chr2:73466669-73466883(+)$1	214	58	74	12.1061
ddddaooooooa]ddd	chr3:129158492-129158857(-)$1	365	102	118	11.4368
ddd[aooooooadddd	chr6:52149393-52149648(-)$1	255	221	237	11.4778
eeeeeooooooeeeee	chr7:54823439-54823666(-)$1	227	117	133	12.1061
[ddddooooooddddc	chr16:88772552-88772888(-)$1	336	317	333	12.3374
[ddddooooooddddh	chr7:43622626-43622999(+)$1	373	94	110	12.2118
ddd[aooooooa]ddd	chrX:100645891-100646097(+)$1	206	138	154	11.1613
[ddddoooooodddd2	chr14:92582417-92582673(-)$1	256	89	105	12.3307
eeeeeooooooeeeee	chr12:66563583-66563871(-)$1	288	25	41	12.1061
eeeeeooooooeeeee	chr10:75936416-75936743(+)$1	327	3	19	12.1061
:ddddoooooodddd:	chr6:36853636-36853905(+)$1	269	18	34	10.6152
eeeeeooooooeeeee	chr20:3740630-3740934(-)$1	304	216	232	12.1061
eeeeeooooooeeeee	chr8:145150654-145150905(+)$1	251	29	45	12.1061
:ddddooooooddddF	chr2:86426491-86426758(+)$1	267	3	19	10.9619
eeeeeooooooeeeee	chr6:30652300-30652580(-)$1	280	105	121	12.1061
eeeeeooooooeeeee	chr11:43380481-43380764(+)$1	283	259	275	12.1061
eeeeeooooooeeeee	chr11:320683-320969(-)$1	286	220	236	12.1061
eeeeeooooooeeeee	chr21:46359834-46360148(+)$1	314	157	173	12.1061
Dddddoooooodddd:	chr11:126138957-126139285(+)$1	328	216	232	10.3961
!ddddoooooodddd2	chr5:77656347-77656649(+)$1	302	41	57	12.3134
:ddddooooooddddd	chr9:133569069-133569346(+)$1	277	116	132	11.3755
[ddddoooooodddd]	chr8:17941387-17941636(-)$1	249	154	170	12.4893

#otherMatches

#Seq PSSM
CUGACGAGAAUGUCAA	chr16:57496592-57496823(+)$1	231	87	103	12.4089
AACUCAAGGGCGAGUG	chr19:38865392-38865650(+)$1	258	138	154	11.5766
CUGCAGUGGUGUGCGC	chr6:43543449-43543780(-)$1	331	142	158	12.4893
CAGUUGCGGAAGACUU	chr15:64679945-64680261(+)$1	316	171	187	9.7308
GCGUGACGCAGCACGC	chr3:170587845-170588084(-)$1	239	49	65	12.1061
UUUGUCUAAUCGCGGC	chr3:53925693-53925975(-)$1	282	52	68	12.3134
GCCCGAAGCCGCGGAG	chr9:111696617-111696910(+)$1	293	160	176	9.3177
UCUGAAAAGAAUCGGG	chr19:13885174-13885487(+)$1	313	183	199	12.3374
UGUGGGGUUAGCUAUC	chrX:48753940-48754242(-)$1	302	227	243	12.0983
GCUCAAGAAGGUGAGG	chr19:5622494-5622757(-)$1	263	207	223	12.4893
UCCGUAAACAAACGGA	chr6:139094837-139095141(+)$1	304	65	81	12.1061
UGGACAAGAACGCCAU	chr20:2448266-2448505(-)$1	239	9	25	11.5711
AGCUGGUAAGACAGCU	chr1:68962534-68962888(-)$1	354	249	265	12.1061
ACGGCGAGCGGGUACG	chr3:185655534-185655812(-)$1	278	189	205	9.9396
CGCUGGGAGGGCAGCG	chr16:1993001-1993253(-)$1	252	169	185	11.7143
CUUUUUAACCUAAAUU	chr7:1608808-1609053(-)$1	245	37	53	10.1353
UGCGACCAUGUUCGUU	chr18:12703003-12703264(+)$1	261	96	112	10.6152
GAUCAGAAGGGUGAUC	chr8:99129158-99129472(-)$1	314	159	175	12.1061
UUCCACACAGAUGGCA	chr10:14881802-14882085(+)$1	283	10	26	10.4506
GGCCCAAGGAGGAGGC	chr2:97523524-97523845(-)$1	321	262	278	10.0804
GGGCUGUCAGGAGCCG	chr7:116502555-116502807(+)$1	252	174	190	12.4893
AGAUGGCAGAGCAGUC	chr18:71958996-71959285(-)$1	289	173	189	9.1439
CCCGGGUCCCACCGCC	chr22:24109923-24110225(-)$1	302	142	158	9.6209
GUCAUUGGCGUAUGAC	chr2:84686195-84686409(-)$1	214	5	21	12.1061
UUGGCUCACAUGCCAC	chr5:131554140-131554438(-)$1	298	236	252	12.4893
AGGUCGCGGUUGAUCU	chr5:82373039-82373301(-)$1	262	180	196	12.1061
UCAAUAUGUGAAUUGA	chr10:7837991-7838207(+)$1	216	145	161	9.8884
UAUAAGCUUGAUUAUA	chr12:69082639-69082915(+)$1	276	77	93	12.1061
UAAUAGAUGAUUAUUA	chr2:73466669-73466883(+)$1	214	58	74	12.1061
AAGAGGUUUCACAUCU	chr3:129158492-129158857(-)$1	365	102	118	11.4368
CAGAGAGAUUACCUGG	chr6:52149393-52149648(-)$1	255	221	237	11.4778
AGCAAUAGGAUUUGCU	chr7:54823439-54823666(-)$1	227	117	133	12.1061
cgcccgcccaggggcc	chr16:88772552-88772888(-)$1	336	317	333	12.3374
GCGCUGGGGAGAGCGG	chr7:43622626-43622999(+)$1	373	94	110	12.2118
GCAUGGUAGGACUUGC	chrX:100645891-100646097(+)$1	206	138	154	11.1613
UUUCCACACAGGGAAU	chr14:92582417-92582673(-)$1	256	89	105	12.3307
CGGUGUUCGCCCGCCG	chr12:66563583-66563871(-)$1	288	25	41	12.1061
GCCCUUCGCACGGGGC	chr10:75936416-75936743(+)$1	327	3	19	12.1061
AGGAGGAAUUACUCUA	chr6:36853636-36853905(+)$1	269	18	34	10.6152
UCCUGGCGUGGUAGGA	chr20:3740630-3740934(-)$1	304	216	232	12.1061
CCCAGGUAGGGCUGGG	chr8:145150654-145150905(+)$1	251	29	45	12.1061
UGUUGAGUGGACAACU	chr2:86426491-86426758(+)$1	267	3	19	10.9619
ccccaaccuccUGGGG	chr6:30652300-30652580(-)$1	280	105	121	12.1061
GGGCUCCGCGCGGCCC	chr11:43380481-43380764(+)$1	283	259	275	12.1061
UGCUCAAGGAGGAGCA	chr11:320683-320969(-)$1	286	220	236	12.1061
UGCGCGCCCGAGUGCA	chr21:46359834-46360148(+)$1	314	157	173	12.1061
GGCUUUUCUCUGGGUA	chr11:126138957-126139285(+)$1	328	216	232	10.3961
CCCGGAUCUGCUCGGC	chr5:77656347-77656649(+)$1	302	41	57	12.3134
UGGAGAUGAGGCUUCC	chr9:133569069-133569346(+)$1	277	116	132	11.3755
AGCUUGAGCCGaggcg	chr8:17941387-17941636(-)$1	249	154	170	12.4893

#DB
.((((......)))))	chr16:57496592-57496823(+)$1	1	87	103	12.4089
)((((......)))).	chr19:38865392-38865650(+)$1	1	138	154	11.5766
.((((......)))).	chr6:43543449-43543780(-)$1	1	142	158	12.4893
).(((......)))((	chr15:64679945-64680261(+)$1	1	171	187	9.7308
(((((......)))))	chr3:170587845-170588084(-)$1	1	49	65	12.1061
.((((......)))).	chr3:53925693-53925975(-)$1	1	52	68	12.3134
(((((......))).)	chr9:111696617-111696910(+)$1	1	160	176	9.3177
.((((......)))))	chr19:13885174-13885487(+)$1	1	183	199	12.3374
.((((......)))))	chrX:48753940-48754242(-)$1	1	227	243	12.0983
.((((......)))).	chr19:5622494-5622757(-)$1	1	207	223	12.4893
(((((......)))))	chr6:139094837-139095141(+)$1	1	65	81	12.1061
(((.(......)))))	chr20:2448266-2448505(-)$1	1	9	25	11.5711
(((((......)))))	chr1:68962534-68962888(-)$1	1	249	265	12.1061
(((((......)).))	chr3:185655534-185655812(-)$1	1	189	205	9.9396
)((((......))))(	chr16:1993001-1993253(-)$1	1	169	185	11.7143
..(((......)))..	chr7:1608808-1609053(-)$1	1	37	53	10.1353
.((((......)))).	chr18:12703003-12703264(+)$1	1	96	112	10.6152
(((((......)))))	chr8:99129158-99129472(-)$1	1	159	175	12.1061
(((((......))).)	chr10:14881802-14882085(+)$1	1	10	26	10.4506
(((((......).)))	chr2:97523524-97523845(-)$1	1	262	278	10.0804
.((((......)))).	chr7:116502555-116502807(+)$1	1	174	190	12.4893
(..((......)).))	chr18:71958996-71959285(-)$1	1	173	189	9.1439
(.(((......)))..	chr22:24109923-24110225(-)$1	1	142	158	9.6209
(((((......)))))	chr2:84686195-84686409(-)$1	1	5	21	12.1061
.((((......)))).	chr5:131554140-131554438(-)$1	1	236	252	12.4893
(((((......)))))	chr5:82373039-82373301(-)$1	1	180	196	12.1061
(((((......)))))	chr10:7837991-7838207(+)$1	1	145	161	9.8884
(((((......)))))	chr12:69082639-69082915(+)$1	1	77	93	12.1061
(((((......)))))	chr2:73466669-73466883(+)$1	1	58	74	12.1061
(((((......).)))	chr3:129158492-129158857(-)$1	1	102	118	11.4368
(((.(......)))))	chr6:52149393-52149648(-)$1	1	221	237	11.4778
(((((......)))))	chr7:54823439-54823666(-)$1	1	117	133	12.1061
.((((......)))))	chr16:88772552-88772888(-)$1	1	317	333	12.3374
.((((......)))))	chr7:43622626-43622999(+)$1	1	94	110	12.2118
(((.(......).)))	chrX:100645891-100646097(+)$1	1	138	154	11.1613
.((((......)))).	chr14:92582417-92582673(-)$1	1	89	105	12.3307
(((((......)))))	chr12:66563583-66563871(-)$1	1	25	41	12.1061
(((((......)))))	chr10:75936416-75936743(+)$1	1	3	19	12.1061
.((((......)))).	chr6:36853636-36853905(+)$1	1	18	34	10.6152
(((((......)))))	chr20:3740630-3740934(-)$1	1	216	232	12.1061
(((((......)))))	chr8:145150654-145150905(+)$1	1	29	45	12.1061
.((((......))))(	chr2:86426491-86426758(+)$1	1	3	19	10.9619
(((((......)))))	chr6:30652300-30652580(-)$1	1	105	121	12.1061
(((((......)))))	chr11:43380481-43380764(+)$1	1	259	275	12.1061
(((((......)))))	chr11:320683-320969(-)$1	1	220	236	12.1061
(((((......)))))	chr21:46359834-46360148(+)$1	1	157	173	12.1061
(((((......)))).	chr11:126138957-126139285(+)$1	1	216	232	10.3961
.((((......)))).	chr5:77656347-77656649(+)$1	1	41	57	12.3134
.((((......))))(	chr9:133569069-133569346(+)$1	1	116	132	11.3755
.((((......)))).	chr8:17941387-17941636(-)$1	1	154	170	12.4893

#PSSM
e : 0.42	[ : 0.19	d : 0.10	: : 0.08	! : 0.06	b : 0.04	g : 0.04	" : 0.02	G : 0.02	D : 0.02	
d : 0.48	e : 0.38	! : 0.04	: : 0.02	b : 0.02	c : 0.02	[ : 0.02	g : 0.02	
d : 0.46	e : 0.38	c : 0.12	! : 0.02	g : 0.02	
d : 0.42	e : 0.34	c : 0.12	[ : 0.06	b : 0.04	g : 0.02	
d : 0.40	e : 0.34	c : 0.10	a : 0.10	b : 0.04	g : 0.02	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.40	e : 0.34	c : 0.10	a : 0.10	b : 0.04	g : 0.02	
d : 0.42	e : 0.36	c : 0.10	] : 0.06	b : 0.04	g : 0.02	
d : 0.46	e : 0.36	c : 0.12	] : 0.04	g : 0.02	
d : 0.50	e : 0.38	] : 0.04	2 : 0.04	c : 0.02	g : 0.02	
e : 0.40	d : 0.14	] : 0.10	2 : 0.10	: : 0.08	c : 0.06	b : 0.04	g : 0.04	h : 0.02	F : 0.02	

#score	577.8141285977101
#seq	50
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_UTR_m2_run1.txt

#BEAR
:ccc[cccmmmmccc]ccc	chr1:26147380-26147680(+)$1	300	213	232	7.6979
egggggggmmmmggggggg	chr3:49050497-49050788(+)$1	291	180	199	8.3436
ddd!!cccooooooccc44	chr19:50168041-50168352(-)$1	311	222	241	7.1911
:gggggggmmmmggggggg	chr20:60710053-60710329(+)$1	276	167	186	7.4065
eee!!cccmmmmccc4444	chr16:57220711-57220971(+)$1	260	190	209	8.7162
d!!cccbbmmmmbb]ccc]	chr8:71314210-71314465(-)$1	255	164	183	7.5274
iiiiiiiiillliiiiiii	chr16:2581146-2581444(+)$1	298	93	112	6.7477
eeee[cccmmmmccceeee	chr2:131808664-131808926(-)$1	262	90	109	9.1679
ccc!!cccmmmmccc22cc	chr20:33872250-33872486(-)$1	236	137	156	8.3566
[gggggggmmmmggggggg	chr16:68331309-68331656(+)$1	347	283	302	8.3641
ffff[cccmmmmccc]fff	chr12:30907133-30907456(-)$1	323	248	267	8.2455
:gggggggmmmmggggggg	chr17:74731214-74731466(-)$1	252	9	28	7.4065
ggg!!abbmmmmbb]a22g	chr2:178128151-178128399(-)$1	248	6	25	7.6470
!eeeee[bblllbb]eeee	chr14:24908336-24908590(+)$1	254	109	128	6.6841
eee!!bboooooobb]eee	chr16:2580590-2580881(+)$1	291	133	152	6.8828
ggg[ddddmmmmdddd]gg	chr17:7477028-7477309(+)$1	281	129	148	7.1934
dddd!!ccclllccc]ddd	chr17:75450071-75450338(+)$1	267	213	232	6.5678
hhffffffmmmmffffff]	chr9:127020423-127020706(+)$1	283	193	212	6.6884
b[ffffffmmmmffffff]	chr2:20549869-20550113(-)$1	244	1	20	6.7446
[ccc[a[ammmma]a]ccc	chr8:134308972-134309242(-)$1	270	243	262	8.2231
eeeee[bbmmmmbbeeeee	chr16:28876805-28877047(+)$1	242	4	23	8.1841
eeee[cccooooooccc]e	chr5:73924808-73925103(-)$1	295	251	270	7.8757
dddd[cccooooooccc]d	chr15:72521844-72522138(-)$1	294	198	217	7.0887
eee!!cccmmmmccc22ee	chr17:75452335-75452604(+)$1	269	240	259	8.8756
fffeeeeeooooooeeeee	chr22:41755305-41755580(+)$1	275	115	134	6.9737
ff!!cccammmma]cccff	chr9:110046150-110046532(+)$1	382	140	159	7.9532
hhheeeeeooooooeeeee	chr8:134308518-134308847(-)$1	329	199	218	6.8504
dd[eeeeemmmmeeeee]d	chr21:34942094-34942381(+)$1	287	196	215	7.7067
eeee!!bbmmmmbb22eee	chr1:47842913-47843200(+)$1	287	4	23	8.1216
gggg!!bbmmmmbb]gggg	chr3:49045518-49045768(+)$1	250	203	222	8.2037
eeeeeeeeooooooeeeee	chr10:102758631-102758912(+)$1	281	189	208	7.4238
eeccccccmmmmccc]ccc	chr20:62565176-62565444(+)$1	268	27	46	8.4167
f[a[ddddmmmmdddd]a]	chr19:2270253-2270568(+)$1	315	63	82	6.7500
"""eeeeemmmmeeeeecc	chr10:74035261-74035511(+)$1	250	58	77	7.4621
dd[eeeeemmmmeeeee]d	chr11:64073910-64074163(+)$1	253	171	190	7.7067
!!eeeeeammmma]eeeee	chr1:1336649-1336964(+)$1	315	159	178	8.5836
:ddddcccmmmmccc]ddd	chr16:2579729-2579975(+)$1	246	39	58	6.9386
!gggggggmmmmggggggg	chr6:117996584-117996877(+)$1	293	269	288	8.3944
cc[eeeeeooooooeeeee	chr8:144674985-144675247(-)$1	262	185	204	7.2579
!eeeee[bblllbb]eeee	chr12:125398641-125398963(-)$1	322	20	39	6.6841
eeeeeccclllccc333ee	chr14:32546526-32546800(+)$1	274	31	50	7.3257
gggggggaooooooa]ggg	chr8:144679209-144679499(-)$1	290	11	30	7.5502

#otherMatches

#Seq PSSM
AUGUGGUCUAGAGACGGCA	chr1:26147380-26147680(+)$1	300	213	232	7.6979
GGUGUGACCUCAGUCACAU	chr3:49050497-49050788(+)$1	291	180	199	8.3436
CGCCCAGGAAAUGCCCUAU	chr19:50168041-50168352(-)$1	311	222	241	7.1911
GUGACAGGGCAUUUUGUCG	chr20:60710053-60710329(+)$1	276	167	186	7.4065
UAGGAAGCAGGAGCUAGAA	chr16:57220711-57220971(+)$1	260	190	209	8.7162
GCUGAGAGCCAGCUACUCU	chr8:71314210-71314465(-)$1	255	164	183	7.5274
GGUUGGUCCACAGGGCUAG	chr16:2581146-2581444(+)$1	298	93	112	6.7477
CACCCACCUGAUGGUGGUG	chr2:131808664-131808926(-)$1	262	90	109	9.1679
GGAUACUUGGGAAAGGAUC	chr20:33872250-33872486(-)$1	236	137	156	8.3566
GAGUCCCUAUAGAGGGGCU	chr16:68331309-68331656(+)$1	347	283	302	8.3641
ACUGGUUGGGUGUAAGCGG	chr12:30907133-30907456(-)$1	323	248	267	8.2455
CCUUGGUUAUUUGGCCAGG	chr17:74731214-74731466(-)$1	252	9	28	7.4065
GUGCCCCCUGGUGGCGCUC	chr2:178128151-178128399(-)$1	248	6	25	7.6470
UUCACUUUCAGUGAUGGUG	chr14:24908336-24908590(+)$1	254	109	128	6.6841
AGGGAAGAACCACCUGCCU	chr16:2580590-2580881(+)$1	291	133	152	6.8828
GGGAAGGGGAUGUCCUACC	chr17:7477028-7477309(+)$1	281	129	148	7.1934
GGCUGACCACCCUGGAGGC	chr17:75450071-75450338(+)$1	267	213	232	6.5678
GGAGCGUCUGGUGGCGUUG	chr9:127020423-127020706(+)$1	283	193	212	6.6884
UGCGGGGCCGCCGCCUCGG	chr2:20549869-20550113(-)$1	244	1	20	6.7446
GUGGGUGCAGAAGGGACUA	chr8:134308972-134309242(-)$1	270	243	262	8.2231
GGCUGAGGCUGGCCCAGCC	chr16:28876805-28877047(+)$1	242	4	23	8.1841
AGGGGAGGCUGCUUUCUGC	chr5:73924808-73925103(-)$1	295	251	270	7.8757
GAAGAUGCAGGAAAGCACC	chr15:72521844-72522138(-)$1	294	198	217	7.0887
UCCCCACCACCAGGUAUGG	chr17:75452335-75452604(+)$1	269	240	259	8.8756
GGUUUCAGGGGCCACUGGA	chr22:41755305-41755580(+)$1	275	115	134	6.9737
GCCGUCUCAGCCGUAGAGC	chr9:110046150-110046532(+)$1	382	140	159	7.9532
GCCCCCGGAGGAACCCGGG	chr8:134308518-134308847(-)$1	329	199	218	6.8504
CUGCCUCAUCAUUGGGGGA	chr21:34942094-34942381(+)$1	287	196	215	7.7067
UAGUGUUUAUUAAAUAACU	chr1:47842913-47843200(+)$1	287	4	23	8.1216
AUUACAUGAAGCCACUAAU	chr3:49045518-49045768(+)$1	250	203	222	8.2037
CGCCCCAGUGAUUGUUGGG	chr10:102758631-102758912(+)$1	281	189	208	7.4238
CCUUCGGUACCCAUCAGAG	chr20:62565176-62565444(+)$1	268	27	46	8.4167
UGCGCUGCGGGAGCGGGGA	chr19:2270253-2270568(+)$1	315	63	82	6.7500
ACGUGCUCCUCAGAGCAGC	chr10:74035261-74035511(+)$1	250	58	77	7.4621
ACGGGUUUGGGAAGGCCGG	chr11:64073910-64074163(+)$1	253	171	190	7.7067
GUUGCGGCAAGGGUCUGCG	chr1:1336649-1336964(+)$1	315	159	178	8.5836
UGGCACCAUCCUUGGUUGC	chr16:2579729-2579975(+)$1	246	39	58	6.9386
GGUGUGGCGGGUGCUGCAC	chr6:117996584-117996877(+)$1	293	269	288	8.3944
GGAUGACGGAGUGACGUCA	chr8:144674985-144675247(-)$1	262	185	204	7.2579
AGGCGGGCUGUGAGGUCGU	chr12:125398641-125398963(-)$1	322	20	39	6.6841
AGCGGUCCCCAGGAAUguc	chr14:32546526-32546800(+)$1	274	31	50	7.3257
UCGGGCGCGACAGAGACGC	chr8:144679209-144679499(-)$1	290	11	30	7.5502

#DB
.(((.(((....))).)))	chr1:26147380-26147680(+)$1	1	213	232	7.6979
)(((((((....)))))))	chr3:49050497-49050788(+)$1	1	180	199	8.3436
(((..(((......)))..	chr19:50168041-50168352(-)$1	1	222	241	7.1911
.(((((((....)))))))	chr20:60710053-60710329(+)$1	1	167	186	7.4065
(((..(((....)))....	chr16:57220711-57220971(+)$1	1	190	209	8.7162
(..(((((....)).))).	chr8:71314210-71314465(-)$1	1	164	183	7.5274
(((((((((...)))))))	chr16:2581146-2581444(+)$1	1	93	112	6.7477
((((.(((....)))))))	chr2:131808664-131808926(-)$1	1	90	109	9.1679
(((..(((....)))..))	chr20:33872250-33872486(-)$1	1	137	156	8.3566
.(((((((....)))))))	chr16:68331309-68331656(+)$1	1	283	302	8.3641
((((.(((....))).)))	chr12:30907133-30907456(-)$1	1	248	267	8.2455
.(((((((....)))))))	chr17:74731214-74731466(-)$1	1	9	28	7.4065
(((..(((....)).)..)	chr2:178128151-178128399(-)$1	1	6	25	7.6470
.(((((.((...)).))))	chr14:24908336-24908590(+)$1	1	109	128	6.6841
(((..((......)).)))	chr16:2580590-2580881(+)$1	1	133	152	6.8828
(((.((((....)))).))	chr17:7477028-7477309(+)$1	1	129	148	7.1934
((((..(((...))).)))	chr17:75450071-75450338(+)$1	1	213	232	6.5678
((((((((....)))))).	chr9:127020423-127020706(+)$1	1	193	212	6.6884
(.((((((....)))))).	chr2:20549869-20550113(-)$1	1	1	20	6.7446
.(((.(.(....).).)))	chr8:134308972-134309242(-)$1	1	243	262	8.2231
(((((.((....)))))))	chr16:28876805-28877047(+)$1	1	4	23	8.1841
((((.(((......))).)	chr5:73924808-73925103(-)$1	1	251	270	7.8757
((((.(((......))).)	chr15:72521844-72522138(-)$1	1	198	217	7.0887
(((..(((....)))..))	chr17:75452335-75452604(+)$1	1	240	259	8.8756
)))(((((......)))))	chr22:41755305-41755580(+)$1	1	115	134	6.9737
((..((((....).)))))	chr9:110046150-110046532(+)$1	1	140	159	7.9532
((((((((......)))))	chr8:134308518-134308847(-)$1	1	199	218	6.8504
((.(((((....))))).)	chr21:34942094-34942381(+)$1	1	196	215	7.7067
((((..((....))..)))	chr1:47842913-47843200(+)$1	1	4	23	8.1216
((((..((....)).))))	chr3:49045518-49045768(+)$1	1	203	222	8.2037
)))(((((......)))))	chr10:102758631-102758912(+)$1	1	189	208	7.4238
((((((((....))).)))	chr20:62565176-62565444(+)$1	1	27	46	8.4167
(.(.((((....)))).).	chr19:2270253-2270568(+)$1	1	63	82	6.7500
...(((((....)))))))	chr10:74035261-74035511(+)$1	1	58	77	7.4621
((.(((((....))))).)	chr11:64073910-64074163(+)$1	1	171	190	7.7067
..((((((....).)))))	chr1:1336649-1336964(+)$1	1	159	178	8.5836
.(((((((....))).)))	chr16:2579729-2579975(+)$1	1	39	58	6.9386
.(((((((....)))))))	chr6:117996584-117996877(+)$1	1	269	288	8.3944
((.(((((......)))))	chr8:144674985-144675247(-)$1	1	185	204	7.2579
.(((((.((...)).))))	chr12:125398641-125398963(-)$1	1	20	39	6.6841
((((((((...)))...))	chr14:32546526-32546800(+)$1	1	31	50	7.3257
((((((((......).)))	chr8:144679209-144679499(-)$1	1	11	30	7.5502

#PSSM
e : 0.26	d : 0.14	: : 0.09	f : 0.09	g : 0.09	! : 0.09	c : 0.04	[ : 0.04	h : 0.04	i : 0.02	b : 0.02	" : 0.02	
e : 0.28	g : 0.21	d : 0.14	c : 0.09	f : 0.07	! : 0.04	h : 0.04	[ : 0.04	i : 0.02	" : 0.02	
e : 0.28	g : 0.21	c : 0.09	d : 0.09	f : 0.09	[ : 0.07	! : 0.04	i : 0.02	h : 0.02	a : 0.02	" : 0.02	
e : 0.35	g : 0.16	! : 0.16	c : 0.09	f : 0.07	d : 0.07	[ : 0.04	i : 0.02	
e : 0.28	! : 0.21	[ : 0.14	g : 0.14	c : 0.07	d : 0.07	f : 0.04	i : 0.02	
c : 0.33	e : 0.23	g : 0.14	! : 0.07	a : 0.04	d : 0.04	f : 0.04	i : 0.02	b : 0.02	[ : 0.02	
c : 0.33	e : 0.19	g : 0.14	b : 0.14	[ : 0.07	d : 0.04	f : 0.04	i : 0.02	
c : 0.30	b : 0.16	e : 0.16	g : 0.11	a : 0.09	d : 0.04	f : 0.04	i : 0.02	o : 0.02	
m : 0.66	o : 0.21	b : 0.04	i : 0.02	c : 0.02	l : 0.02	
m : 0.66	o : 0.21	l : 0.11	
m : 0.66	o : 0.21	l : 0.11	
m : 0.66	o : 0.21	l : 0.09	c : 0.02	
c : 0.23	o : 0.21	b : 0.16	g : 0.11	a : 0.07	e : 0.07	d : 0.04	f : 0.04	i : 0.02	
c : 0.23	o : 0.19	b : 0.19	g : 0.11	] : 0.07	e : 0.07	d : 0.04	f : 0.04	i : 0.02	
c : 0.30	e : 0.21	g : 0.11	] : 0.11	d : 0.04	f : 0.04	a : 0.04	i : 0.02	b : 0.02	2 : 0.02	3 : 0.02	
e : 0.28	] : 0.19	g : 0.14	c : 0.11	2 : 0.07	d : 0.04	f : 0.04	4 : 0.02	i : 0.02	a : 0.02	3 : 0.02	
e : 0.33	c : 0.19	g : 0.16	2 : 0.07	f : 0.07	] : 0.04	d : 0.04	4 : 0.02	i : 0.02	3 : 0.02	
e : 0.30	g : 0.19	c : 0.14	f : 0.09	] : 0.09	4 : 0.04	d : 0.04	i : 0.02	2 : 0.02	a : 0.02	
e : 0.33	g : 0.21	c : 0.11	d : 0.11	] : 0.09	4 : 0.04	f : 0.04	i : 0.02	

#score	320.1314898514143
#seq	42
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_CDS_m2_run2.txt

#BEAR
ff!!ccc!!dddd!!cccmmmmcccdddd]cccfffff	chr14:24029110-24029344(-)$1	234	174	212	11.1554
ffffffa!!bb####ddddllldddd333bb22a]fff	chr22:50857744-50857992(+)$1	248	30	68	12.1400
=======[bb[a[eeeeeooooooeeeee]a]bb22==	chr2:216289817-216290026(-)$1	209	94	132	13.0189
ee!!a!!a[ccc"""cccmmmmccc4444ccc]a22a2	chr19:5594006-5594290(-)$1	284	200	238	13.5080
!!iiiiiiiii!!ddddcccmmmmccc4444dddd22i	chr12:80083757-80084054(-)$1	297	172	210	12.6631
hhhhhhhdddd####cccooooooccc4444dddd]hh	chr12:9262822-9263030(-)$1	208	58	96	14.3677
ff::==============oooooo==============	chr8:124381200-124381489(-)$1	289	23	61	14.2217
===========####ccc[bblllbbccc333======	chr12:9261872-9262095(-)$1	223	151	189	14.0242
cbb[ccc[dddd[ccc[aooooooa]cccdddd]cccb	chr9:117044658-117044918(+)$1	260	88	126	12.9233
c[eeeeecccccc[eeeeellleeeee22ccc]ccc]e	chr2:8822877-8823099(+)$1	222	170	208	11.4409
cc[eeeee[ccc"""cccooooooccc]ccceeeee]c	chr17:77073686-77073931(+)$1	245	171	209	16.0311
gccc!!ggggggg####cccmmmmccc22ggggggg55	chr6:30638468-30638771(-)$1	303	151	189	12.2981
eeeeeeee[ccc[bb!!bboooooobb22bb]ccc]ee	chr2:216292904-216293128(-)$1	224	35	73	12.8165
eeee:dddd!!gggggggooooooggggggg333dddd	chr17:37618274-37618526(+)$1	252	74	112	12.0613
Geeeeea[bb$$$$$cccooooooccc333bb]a]eee	chr2:54872286-54872573(+)$1	287	67	105	14.9989
====:==========ddddnnnnndddd]=========	chr10:93702153-93702413(+)$1	260	179	217	12.2826
eeee[eeeee!!cccrrrrrrrrrccc22eeeeeeeee	chr20:17640487-17640790(-)$1	303	190	228	11.0902
++==========a[a[bbmmmmbb]a]a]=========	chr2:96943879-96944117(-)$1	238	128	166	11.3115
==========[bb!!cccoooooocccbb=========	chrX:132833824-132834042(-)$1	218	95	133	16.3270
c[ccc!!eeeee[bb"""ccclllccc22bb]eeeeec	chr2:219294224-219294488(+)$1	264	16	54	11.7206
eeeee[cccbb"""a[cccmmmmccca333bb]ccc]e	chr6:144811107-144811333(+)$1	226	171	209	13.5434
""dddd[eeeee[bba[aooooooa]a]bbeeeeeddd	chr10:73590782-73591069(-)$1	287	218	256	11.9493
ggggg[a[dddd!!ddddoooooodddd22dddd]agg	chr2:54880644-54880922(+)$1	278	42	80	14.3139
ffffdddd!!bb!!ddddoooooodddd22bb22dddd	chr2:54873245-54873527(+)$1	282	154	192	12.4803
Hggggggg[a[a[ccc[aooooooa]ccc]aa]ggggg	chr2:216292873-216293084(-)$1	211	9	47	14.8260
!dddd!!ccc$$$$$cccooooooccc22ccc]dddd>	chr6:144747450-144747693(+)$1	243	45	83	15.1040
gggg:cccgggggggddddmmmmdddd4444ggggggg	chr16:74976604-74976824(-)$1	220	33	71	11.2186
ffff"""ggggggg!!bboooooobb]gggggggffff	chr22:38201438-38201714(+)$1	276	17	55	13.4917
gggggg!!cccccc[cccmmmmccc]ccc333ccc333	chr17:39846922-39847164(+)$1	242	32	70	12.8610
c[bb[ggggggg$$$$$cccmmmmccc333ggggggg]	chr12:26732863-26733078(-)$1	215	10	48	13.4630
ee=========="""cccooooooccc22=========	chr2:11340994-11341290(-)$1	296	175	213	18.8435
cccccc####bb[a[cccooooooccc]a]bb4444cc	chr6:75970438-75970730(-)$1	292	90	128	15.2775
eeee[dddd[bb"""ddddmmmmdddd4444bb333dd	chr11:47765429-47765694(-)$1	265	40	78	11.4745
####cccccc!!dddd!!ccclllccc333dddd22cc	chr1:109896882-109897176(-)$1	294	155	193	11.8811
dd[ggggggg####cccpppppppccc333ggggggg]	chr6:144744584-144744815(+)$1	231	159	197	11.3180
eeeee"""dddd[ccc[bboooooobb]cccdddd]ee	chr8:22273485-22273740(+)$1	255	131	169	12.4273
eee!!bb[agggggggcccmmmmccc333ggggggg]a	chr14:23792107-23792325(+)$1	218	121	159	13.0641
ccc[hhhhhhhh"""cccooooooccchhhhhhhhccc	chr22:38201926-38202194(+)$1	268	193	231	13.5062
iiiiiiii!!ccc[ccclllccc]ccc22iiiiiiiii	chr12:76461052-76461322(-)$1	270	223	261	12.9875
ffff[bb"""ccc"""ddddllldddd22ccc22bb]f	chr6:144780262-144780486(+)$1	224	112	150	11.6948
cc[ffffff!!dddd[bboooooobb]dddd22fffff	chr9:79874938-79875229(+)$1	291	207	245	10.7022
!!ccc!!eeeee!!a!!bblllbb22a22eeeee22cc	chr10:33216919-33217151(-)$1	232	77	115	11.7720
mmmmccc:eeeee!!cccooooooccc22eeeeeffff	chr1:10356539-10356824(+)$1	285	58	96	11.7629
4444iiiiiiiiieeeee[aooooooa22eeeeedddd	chr3:78795885-78796141(-)$1	256	68	106	11.6847
c[bb[ccc"""ccc[cccooooooccc]ccc333ccc]	chr2:62991389-62991596(+)$1	207	78	116	15.5461
cc[ggggggg$$$$$cccrrrrrrrrrcccgggggggc	chr6:142702991-142703249(+)$1	258	183	221	12.0504
"ccc$$$$$ggggggg[bboooooobb22gggggggcc	chr1:155791978-155792357(-)$1	379	61	99	13.0906
::eeeee[cccgggggggooooooggggggg]ccc]ee	chr7:22349509-22349811(-)$1	302	168	206	11.8261
ccc"""ggggggg!!cccmmmmcccggggggg4444cc	chr14:56096575-56096864(+)$1	289	240	278	12.6913
ggggggg[eeeee[a[ccclllccc]a]eeeeeggggg	chr10:101591417-101591644(+)$1	227	44	82	12.5819
:ccc[bb!!eeeeeddddoooooodddd]eeeee22bb	chr2:216299318-216299525(-)$1	207	31	69	11.1779
b[ccc[ccc[ccc!!eeeeellleeeeeccc]ccc]cc	chr2:219295349-219295589(+)$1	240	142	180	11.2983
f[eeeee[ccc[a[ddddllldddd]a]ccc]eeeeef	chr1:32653484-32653776(+)$1	292	241	279	11.0744
====================mmmm==============	chr17:78264267-78264536(+)$1	269	4	42	14.2032

#otherMatches

#Seq PSSM
UUCAGAAUCCUCAAUCCUAACAAGGUGAGCUUCAGGAG	chr14:24029110-24029344(-)$1	234	174	212	11.1554
CAGGCAGGACUGUGUGGAGCAGCUUCUGAAGAACAUGU	chr22:50857744-50857992(+)$1	248	30	68	12.1400
CUGUGUCACAGACAGUGGUGUGGUCUACUCUGUGGGGA	chr2:216289817-216290026(-)$1	209	94	132	13.0189
GCGCCAGCGGCUGGAGCGGGAGCGCAUGGAGCGGGAGC	chr19:5594006-5594290(-)$1	284	200	238	13.5080
ACGCCGCUGGGAAGCCCCCCGCGGGGGCUCUGGGCACC	chr12:80083757-80084054(-)$1	297	172	210	12.6631
UUUGAAAAUAAUUAUAAACUUCUUUUUUCUUUUGUCUU	chr12:9262822-9263030(-)$1	208	58	96	14.3677
UGCCauauauauauauauauacaaauauauauauauau	chr8:124381200-124381489(-)$1	289	23	61	14.2217
AAGAGAUGAAUGUAUCAGUGUGUGGCCUGUGAGUUCAU	chr12:9261872-9262095(-)$1	223	151	189	14.0242
GCUAUCAAGGACAGCUGGGUGAGAUGGGCGUCCCUGGA	chr9:117044658-117044918(+)$1	260	88	126	12.9233
CUUGUGCCACCCGUGGGUAAACUGCCCCUCGGUGUGUG	chr2:8822877-8823099(+)$1	222	170	208	11.4409
CCCCUGGCGUGUCGCCAGCCCCCUCUGAGCAGCCAGAG	chr17:77073686-77073931(+)$1	245	171	209	16.0311
CGACAGCGGGACAAGGAUCGGACUCGAAAUGUCCUGGA	chr6:30638468-30638771(-)$1	303	151	189	12.2981
UGAUGUAUGUAUGUGCUUCCUUUGUGACACAGAUAGAU	chr2:216292904-216293128(-)$1	224	35	73	12.8165
GGCAAGAAGGACGGGAGUGGAGGAGCUUCUGGAACUUU	chr17:37618274-37618526(+)$1	252	74	112	12.0613
CUCUGCCCUCAGAUGCUGGAGAAUCAGAUGGAAGUGCG	chr2:54872286-54872573(+)$1	287	67	105	14.9989
GUGGUUCUGAGAAGAAAGUCUAAAAUUUGUUUUUUCAG	chr10:93702153-93702413(+)$1	260	179	217	12.2826
GUGGGUGCCAAGGGCAACACACCAGCCACUGGCACUAC	chr20:17640487-17640790(-)$1	303	190	228	11.0902
AAUCUCCUGAGGCAGGUGAGGACAGCAGACUUCAGGAG	chr2:96943879-96944117(-)$1	238	128	166	11.3115
AAGAAACCUUAUCCAGCCGAAGAAGGUGAGAGGUUUCU	chrX:132833824-132834042(-)$1	218	95	133	16.3270
UGGGGACUCCCUGGGAGAAGGUGCCCUGGCUGAGGGAC	chr2:219294224-219294488(+)$1	264	16	54	11.7206
CUGACCUCCCCAGAGAGUAGGACUGCCAGAGGAGGAAG	chr6:144811107-144811333(+)$1	226	171	209	13.5434
GGUGCUUCUGGGGCCCAGGAGAGGCAGUGGCCCAGAGU	chr10:73590782-73591069(-)$1	287	218	256	11.9493
GGUGAUGGUGGGAAGGCCGCCAUGGGCUGACCUGGCUC	chr2:54880644-54880922(+)$1	278	42	80	14.3139
GUCACUGACAGCAGCAGCCUCAGCGCUGAGGCCAUCAG	chr2:54873245-54873527(+)$1	282	154	192	12.4803
CCUUUGUGACACAGAUAGAUGCAACGAUCAGGACACAA	chr2:216292873-216293084(-)$1	211	9	47	14.8260
UGCGUCAGACCACCAGGCCCUACAGCCAAGUCAACGUC	chr6:144747450-144747693(+)$1	243	45	83	15.1040
GCUGUGCUCUGCUCUGCUUCCGAAAGCACCAAGGGCAG	chr16:74976604-74976824(-)$1	220	33	71	11.2186
GGCUCAGGAGCAGAUCCCGAGGCAGGCUUUGCUCAGCC	chr22:38201438-38201714(+)$1	276	17	55	13.4917
ACAGGGUUGUUGCCAUUAGAAAUGGAGGCUUUAACUCU	chr17:39846922-39847164(+)$1	242	32	70	12.8610
CAGGAAACAUGCAGACAUCUUUUUGGAAAAGUGUGUUA	chr12:26732863-26733078(-)$1	215	10	48	13.4630
GAACUUACGGAAAAAGAUGCUACAAUUGCUUCUGUAAG	chr2:11340994-11341290(-)$1	296	175	213	18.8435
UUGUAAAAACCAGAAUCCCAGUAAGGAAUGUGAACCUU	chr6:75970438-75970730(-)$1	292	90	128	15.2775
AUAUCAGCCAGCCAGCAUCUCAAGAUGGAAUGCGUAGG	chr11:47765429-47765694(-)$1	265	40	78	11.4745
AAUUCUGAUUAUCUUUUAGCUCUCAGCACUGAAGUAAG	chr1:109896882-109897176(-)$1	294	155	193	11.8811
GGUUUUACAUCAGAACAAUGUAAGUGUGUAAUGUGAGU	chr6:144744584-144744815(+)$1	231	159	197	11.3180
GGCUGAAAGGUGUCCGCUACUCUGAUAUCGGCACUCUG	chr8:22273485-22273740(+)$1	255	131	169	12.4273
UUGAGGAGAAGAUGGAGGCUGAUGCCCGUUCCAUCUAU	chr14:23792107-23792325(+)$1	218	121	159	13.0641
CCGGCAAGAAGAAGUGACAAUGAAGUCUUUUCUUGCGG	chr22:38201926-38202194(+)$1	268	193	231	13.5062
CGUAUCUAUUUUUAAGACCAUCUAGGAUUUAGAUAUGC	chr12:76461052-76461322(-)$1	270	223	261	12.9875
CCUGAUGUCUCAGCCUUCUGCCCCAGAUUUUGUCCAGC	chr6:144780262-144780486(+)$1	224	112	150	11.6948
GUUACUUUCAAAAUUAAUAUAAGCAUGAAUUAAGAAAG	chr9:79874938-79875229(+)$1	291	207	245	10.7022
UGGAACAGAUCUGAUGAAUGAAAUGAGGAGGAUUACUU	chr10:33216919-33217151(-)$1	232	77	115	11.7720
UAGUUUGUAAUGAUAACAUUAGUUUGUGUUUGUUCCUC	chr1:10356539-10356824(+)$1	285	58	96	11.7629
AUGAUUUAAUCUUGUUCCUACAGUACUUCGGGAUGACU	chr3:78795885-78796141(-)$1	256	68	106	11.6847
ACAUUGAAAUCACUGUAACACUUUUUAAGGUAAGUUCC	chr2:62991389-62991596(+)$1	207	78	116	15.5461
GCUCUGGAAUCUCUUUGCUUUCUACUUGCAAUUUUGGG	chr6:142702991-142703249(+)$1	258	183	221	12.0504
UUCUGAUGAUGUUCUUGGUUUAUUUGCAGAAGAACAAG	chr1:155791978-155792357(-)$1	379	61	99	13.0906
AUCUAUGGCCAUAGGAGUCUGGCAACUCCUACUGGACA	chr7:22349509-22349811(-)$1	302	168	206	11.8261
GUAUAUUUUCAUUCUUUGGAAACAAGAUGAAAUGGUUG	chr14:56096575-56096864(+)$1	289	240	278	12.6913
UUAUUGGAUCCAACCUCUGGCUCAGUGCUUGGACCAGU	chr10:101591417-101591644(+)$1	227	44	82	12.5819
ACCUACCUAGGCAAUGCGUUGGUUUGUACUUGUUAUGG	chr2:216299318-216299525(-)$1	207	31	69	11.1779
GGUGCAGAAUGAUGGGGCUGAGUCGGCCGUCUUUCAGC	chr2:219295349-219295589(+)$1	240	142	180	11.2983
GUAGGCCUGGGCCCCCUGGAACAGGUGACUCUGGUUUC	chr1:32653484-32653776(+)$1	292	241	279	11.0744
gugugugugcgcacgugugugugugcgcgugugugcaU	chr17:78264267-78264536(+)$1	269	4	42	14.2032

#DB
((..(((..((((..(((....))))))).))))))))	chr14:24029110-24029344(-)$1	1	174	212	11.1554
(((((((..((....((((...))))...))..).)))	chr22:50857744-50857992(+)$1	1	30	68	12.1400
(((((((.((.(.(((((......))))).).))..))	chr2:216289817-216290026(-)$1	1	94	132	13.0189
((..(..(.(((...(((....)))....))).)..).	chr19:5594006-5594290(-)$1	1	200	238	13.5080
..(((((((((..(((((((....)))....))))..)	chr12:80083757-80084054(-)$1	1	172	210	12.6631
(((((((((((....(((......)))....)))).))	chr12:9262822-9263030(-)$1	1	58	96	14.3677
))..((((((((((((((......))))))))))))))	chr8:124381200-124381489(-)$1	1	23	61	14.2217
(((((((((((....(((.((...)))))...))))))	chr12:9261872-9262095(-)$1	1	151	189	14.0242
(((.(((.((((.(((.(......).))))))).))))	chr9:117044658-117044918(+)$1	1	88	126	12.9233
(.(((((((((((.(((((...)))))..))).))).)	chr2:8822877-8823099(+)$1	1	170	208	11.4409
((.(((((.(((...(((......))).)))))))).)	chr17:77073686-77073931(+)$1	1	171	209	16.0311
)(((..(((((((....(((....)))..)))))))..	chr6:30638468-30638771(-)$1	1	151	189	12.2981
((((((((.(((.((..((......))..)).))).))	chr2:216292904-216293128(-)$1	1	35	73	12.8165
)))).((((..(((((((......)))))))...))))	chr17:37618274-37618526(+)$1	1	74	112	12.0613
(((((((.((.....(((......)))...)).).)))	chr2:54872286-54872573(+)$1	1	67	105	14.9989
)))).((((((((((((((.....)))).)))))))))	chr10:93702153-93702413(+)$1	1	179	217	12.2826
((((.(((((..(((.........)))..)))))))))	chr20:17640487-17640790(-)$1	1	190	228	11.0902
..(((((((((((.(.((....)).).).)))))))))	chr2:96943879-96944117(-)$1	1	128	166	11.3115
((((((((((.((..(((......))))))))))))))	chrX:132833824-132834042(-)$1	1	95	133	16.3270
(.(((..(((((.((...(((...)))..)).))))))	chr2:219294224-219294488(+)$1	1	16	54	11.7206
(((((.(((((...(.(((....))))...)).))).)	chr6:144811107-144811333(+)$1	1	171	209	13.5434
..((((.(((((.(((.(......).).))))))))))	chr10:73590782-73591069(-)$1	1	218	256	11.9493
(((((.(.((((..((((......))))..)))).)))	chr2:54880644-54880922(+)$1	1	42	80	14.3139
))))((((..((..((((......))))..))..))))	chr2:54873245-54873527(+)$1	1	154	192	12.4803
((((((((.(.(.(((.(......).))).)).)))))	chr2:216292873-216293084(-)$1	1	9	47	14.8260
.((((..(((.....(((......)))..))).)))).	chr6:144747450-144747693(+)$1	1	45	83	15.1040
)))).((((((((((((((....))))....)))))))	chr16:74976604-74976824(-)$1	1	33	71	11.2186
((((...(((((((..((......)).)))))))))))	chr22:38201438-38201714(+)$1	1	17	55	13.4917
((((((..((((((.(((....))).)))...)))...	chr17:39846922-39847164(+)$1	1	32	70	12.8610
(.((.(((((((.....(((....)))...))))))).	chr12:26732863-26733078(-)$1	1	10	48	13.4630
((((((((((((...(((......)))..)))))))))	chr2:11340994-11341290(-)$1	1	175	213	18.8435
((((((....((.(.(((......))).).))....))	chr6:75970438-75970730(-)$1	1	90	128	15.2775
((((.((((.((...((((....))))....))...))	chr11:47765429-47765694(-)$1	1	40	78	11.4745
....((((((..((((..(((...)))...))))..))	chr1:109896882-109897176(-)$1	1	155	193	11.8811
((.(((((((....(((.......)))...))))))).	chr6:144744584-144744815(+)$1	1	159	197	11.3180
(((((...((((.(((.((......)).))))))).))	chr8:22273485-22273740(+)$1	1	131	169	12.4273
(((..((.(((((((((((....)))...))))))).)	chr14:23792107-23792325(+)$1	1	121	159	13.0641
(((.((((((((...(((......))))))))))))))	chr22:38201926-38202194(+)$1	1	193	231	13.5062
((((((((..(((.(((...))).)))..)))))))))	chr12:76461052-76461322(-)$1	1	223	261	12.9875
((((.((...(((...((((...))))..)))..)).)	chr6:144780262-144780486(+)$1	1	112	150	11.6948
((.((((((..((((.((......)).))))..)))))	chr9:79874938-79875229(+)$1	1	207	245	10.7022
..(((..(((((..(..((...))..)..)))))..))	chr10:33216919-33217151(-)$1	1	77	115	11.7720
....))).(((((..(((......)))..)))))((((	chr1:10356539-10356824(+)$1	1	58	96	11.7629
....)))))))))(((((.(......)..)))))((((	chr3:78795885-78796141(-)$1	1	68	106	11.6847
(.((.(((...(((.(((......))).)))...))).	chr2:62991389-62991596(+)$1	1	78	116	15.5461
((.(((((((.....(((.........)))))))))))	chr6:142702991-142703249(+)$1	1	183	221	12.0504
.(((.....(((((((.((......))..)))))))))	chr1:155791978-155792357(-)$1	1	61	99	13.0906
..(((((.((((((((((......))))))).))).))	chr7:22349509-22349811(-)$1	1	168	206	11.8261
(((...(((((((..(((....))))))))))....))	chr14:56096575-56096864(+)$1	1	240	278	12.6913
(((((((.(((((.(.(((...))).).))))))))))	chr10:101591417-101591644(+)$1	1	44	82	12.5819
.(((.((..(((((((((......)))).)))))..))	chr2:216299318-216299525(-)$1	1	31	69	11.1779
(.(((.(((.(((..(((((...)))))))).))).))	chr2:219295349-219295589(+)$1	1	142	180	11.2983
(.(((((.(((.(.((((...)))).).))).))))))	chr1:32653484-32653776(+)$1	1	241	279	11.0744
((((((((((((((((((((....))))))))))))))	chr17:78264267-78264536(+)$1	1	4	42	14.2032

#PSSM
c : 0.20	e : 0.16	f : 0.12	= : 0.09	g : 0.09	! : 0.05	" : 0.03	: : 0.03	h : 0.01	G : 0.01	+ : 0.01	H : 0.01	# : 0.01	d : 0.01	i : 0.01	m : 0.01	4 : 0.01	b : 0.01	
e : 0.18	c : 0.16	f : 0.11	[ : 0.11	= : 0.09	g : 0.09	! : 0.03	d : 0.03	h : 0.01	b : 0.01	+ : 0.01	" : 0.01	# : 0.01	i : 0.01	m : 0.01	4 : 0.01	: : 0.01	
e : 0.20	c : 0.16	= : 0.12	g : 0.09	f : 0.07	[ : 0.07	b : 0.05	! : 0.03	i : 0.03	d : 0.03	h : 0.01	: : 0.01	# : 0.01	m : 0.01	4 : 0.01	
e : 0.20	= : 0.12	c : 0.12	g : 0.12	f : 0.09	! : 0.05	i : 0.03	[ : 0.03	d : 0.03	b : 0.03	h : 0.01	: : 0.01	# : 0.01	m : 0.01	4 : 0.01	" : 0.01	
c : 0.14	e : 0.14	= : 0.12	[ : 0.11	g : 0.11	i : 0.05	: : 0.05	d : 0.05	f : 0.03	h : 0.03	! : 0.03	" : 0.03	a : 0.01	$ : 0.01	
= : 0.14	c : 0.12	e : 0.12	g : 0.11	! : 0.09	d : 0.07	i : 0.05	[ : 0.05	" : 0.05	b : 0.05	f : 0.03	h : 0.03	$ : 0.01	
c : 0.14	= : 0.14	g : 0.12	e : 0.11	! : 0.09	a : 0.05	i : 0.05	d : 0.05	b : 0.05	h : 0.03	" : 0.03	[ : 0.01	# : 0.01	f : 0.01	$ : 0.01	
[ : 0.14	= : 0.12	c : 0.12	g : 0.12	e : 0.11	! : 0.07	d : 0.07	i : 0.05	" : 0.03	a : 0.01	# : 0.01	h : 0.01	f : 0.01	: : 0.01	$ : 0.01	
c : 0.14	= : 0.12	g : 0.12	d : 0.11	e : 0.11	! : 0.09	[ : 0.07	b : 0.03	i : 0.03	" : 0.03	# : 0.01	a : 0.01	h : 0.01	f : 0.01	$ : 0.01	
c : 0.16	g : 0.16	= : 0.12	e : 0.12	d : 0.09	b : 0.07	! : 0.07	i : 0.03	[ : 0.03	" : 0.03	a : 0.01	# : 0.01	h : 0.01	
c : 0.18	g : 0.12	= : 0.11	e : 0.11	d : 0.09	b : 0.09	! : 0.07	[ : 0.05	$ : 0.05	i : 0.03	# : 0.01	h : 0.01	" : 0.01	
c : 0.16	g : 0.16	e : 0.11	d : 0.09	= : 0.09	# : 0.07	b : 0.07	! : 0.05	$ : 0.05	a : 0.03	" : 0.01	h : 0.01	i : 0.01	[ : 0.01	
[ : 0.14	g : 0.14	c : 0.12	" : 0.11	# : 0.07	! : 0.07	$ : 0.07	d : 0.05	= : 0.05	e : 0.05	a : 0.03	b : 0.01	i : 0.01	
! : 0.14	" : 0.12	c : 0.11	g : 0.11	# : 0.09	[ : 0.09	$ : 0.07	e : 0.05	d : 0.05	= : 0.05	b : 0.05	a : 0.01	
d : 0.12	! : 0.11	" : 0.11	c : 0.11	g : 0.09	# : 0.07	$ : 0.07	a : 0.07	e : 0.05	= : 0.05	b : 0.05	[ : 0.05	
c : 0.38	d : 0.18	e : 0.07	g : 0.07	[ : 0.07	! : 0.05	= : 0.03	" : 0.03	# : 0.01	r : 0.01	a : 0.01	$ : 0.01	
c : 0.38	d : 0.18	[ : 0.09	e : 0.07	! : 0.05	b : 0.05	= : 0.03	g : 0.03	# : 0.01	r : 0.01	" : 0.01	$ : 0.01	
c : 0.40	d : 0.16	b : 0.12	e : 0.07	a : 0.05	= : 0.03	g : 0.03	r : 0.01	" : 0.01	! : 0.01	p : 0.01	l : 0.01	
o : 0.40	c : 0.14	m : 0.09	d : 0.09	b : 0.07	[ : 0.03	e : 0.03	r : 0.03	l : 0.03	p : 0.01	= : 0.01	
o : 0.46	m : 0.16	l : 0.11	c : 0.09	r : 0.03	b : 0.01	n : 0.01	p : 0.01	d : 0.01	a : 0.01	e : 0.01	= : 0.01	
o : 0.48	m : 0.24	l : 0.12	c : 0.05	r : 0.03	b : 0.01	n : 0.01	p : 0.01	
o : 0.48	m : 0.24	l : 0.16	r : 0.03	n : 0.01	p : 0.01	c : 0.01	d : 0.01	
o : 0.48	m : 0.14	c : 0.11	l : 0.09	d : 0.03	r : 0.03	b : 0.03	e : 0.01	n : 0.01	p : 0.01	
o : 0.48	c : 0.12	d : 0.09	m : 0.07	l : 0.05	e : 0.03	r : 0.03	b : 0.03	n : 0.01	p : 0.01	] : 0.01	
c : 0.46	d : 0.16	o : 0.07	e : 0.05	b : 0.05	a : 0.05	= : 0.03	g : 0.03	] : 0.01	2 : 0.01	r : 0.01	
c : 0.37	d : 0.16	b : 0.11	] : 0.11	e : 0.05	g : 0.05	= : 0.03	4 : 0.01	a : 0.01	2 : 0.01	o : 0.01	r : 0.01	
c : 0.40	d : 0.14	a : 0.11	e : 0.05	b : 0.05	g : 0.05	] : 0.05	3 : 0.03	= : 0.03	4 : 0.01	r : 0.01	
2 : 0.24	3 : 0.12	] : 0.12	d : 0.11	4 : 0.09	c : 0.09	g : 0.07	e : 0.03	= : 0.03	a : 0.01	b : 0.01	h : 0.01	
2 : 0.27	c : 0.18	3 : 0.12	4 : 0.09	g : 0.07	] : 0.05	d : 0.03	e : 0.03	= : 0.03	b : 0.03	a : 0.01	h : 0.01	
c : 0.18	3 : 0.12	g : 0.12	= : 0.11	e : 0.11	] : 0.07	b : 0.07	4 : 0.07	d : 0.03	2 : 0.03	h : 0.01	i : 0.01	
c : 0.18	g : 0.18	b : 0.12	e : 0.12	= : 0.11	4 : 0.07	d : 0.07	a : 0.03	3 : 0.03	h : 0.01	i : 0.01	
g : 0.16	e : 0.14	] : 0.11	d : 0.11	= : 0.11	c : 0.09	b : 0.09	3 : 0.07	2 : 0.03	a : 0.01	h : 0.01	i : 0.01	
e : 0.18	g : 0.14	= : 0.12	] : 0.11	d : 0.11	c : 0.09	2 : 0.07	b : 0.03	3 : 0.03	4 : 0.03	h : 0.01	i : 0.01	
g : 0.18	e : 0.16	= : 0.12	d : 0.11	c : 0.11	a : 0.05	3 : 0.05	f : 0.03	2 : 0.03	4 : 0.03	b : 0.01	] : 0.01	h : 0.01	i : 0.01	
g : 0.16	c : 0.14	d : 0.12	= : 0.12	2 : 0.09	e : 0.09	f : 0.07	] : 0.05	4 : 0.03	3 : 0.01	h : 0.01	i : 0.01	b : 0.01	
g : 0.16	= : 0.12	2 : 0.11	f : 0.09	] : 0.09	c : 0.09	e : 0.09	d : 0.09	3 : 0.03	4 : 0.03	a : 0.01	i : 0.01	b : 0.01	
c : 0.16	= : 0.14	e : 0.12	g : 0.12	d : 0.11	f : 0.09	] : 0.09	a : 0.01	2 : 0.01	h : 0.01	5 : 0.01	3 : 0.01	i : 0.01	b : 0.01	
c : 0.18	= : 0.14	f : 0.12	e : 0.12	d : 0.09	g : 0.07	] : 0.05	i : 0.03	b : 0.03	2 : 0.01	h : 0.01	5 : 0.01	> : 0.01	3 : 0.01	a : 0.01	

#score	697.5913546431792
#seq	54
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_transcript_m3_run1.txt

#BEAR
[bb[auuuuuuuuuuuua]bbbb	chr17:29058854-29059143(+)$1	289	65	88	21.3612
%%bbuuuuuuuuuuuubb4444f	chr15:28422467-28422705(-)$1	238	166	189	20.6029
b[cccvvvvvvvvvvvvvccc]b	chr17:35634750-35634997(-)$1	247	66	89	21.7761
[ddddtttttttttttdddd]ff	chr15:28386640-28386875(-)$1	235	184	207	22.2326
ggggguuuuuuuuuuuugggggg	chr5:139781379-139781629(+)$1	250	37	60	22.5718
ddddvvvvvvvvvvvvvdddd:d	chr4:100495909-100496168(+)$1	259	18	41	20.7618
fffffuuuuuuuuuuuuffffff	chr1:19444227-19444488(-)$1	261	62	85	21.7355
====vvvvvvvvvvvvv======	chr5:37027361-37027616(+)$1	255	43	66	23.1075
hhwwwwwwwwwwwwwwhhhhhhh	chr21:44269611-44269861(-)$1	250	87	110	19.2299
ddddwwwwwwwwwwwwwwdddd:	chr9:137271064-137271343(+)$1	279	0	23	19.5777
"bbvvvvvvvvvvvvvbb4444i	chr3:197243782-197244065(-)$1	283	36	59	21.6827
===yyyyyyyyyyyyyyyy====	chr2:47643334-47643581(+)$1	247	17	40	20.5087
eeeeettttttttttteeeee33	chr14:39645630-39645835(+)$1	205	107	130	21.8775
eeeeevvvvvvvvvvvvveeeee	chr12:132248995-132249307(+)$1	312	142	165	21.3724
ggwwwwwwwwwwwwwwggggggg	chr9:116997819-116998032(+)$1	213	5	28	20.8692
eeeewwwwwwwwwwwwwweeeee	chr6:144780374-144780590(+)$1	216	20	43	20.7583
ggggguuuuuuuuuuuugggggg	chr2:61449664-61449884(-)$1	220	62	85	22.5718
hh[bbtttttttttttbb]hhhh	chr11:77790663-77790977(-)$1	314	202	225	21.1876
ddwwwwwwwwwwwwwwdddd22b	chr7:100282376-100282608(-)$1	232	24	47	19.8889
fffffuuuuuuuuuuuuffffff	chr7:157611776-157612111(-)$1	335	282	305	21.7355
eeeeevvvvvvvvvvvvveeeee	chr8:9628373-9628677(+)$1	304	113	136	21.3724
gggggtttttttttttggggggg	chr12:123067170-123067422(+)$1	252	146	169	22.6169
ffffftttttttttttffffff2	chr8:100205003-100205221(+)$1	218	169	192	21.4773
KAccctttttttttttccccccn	chr16:16421913-16422158(+)$1	245	8	31	20.0560
"bbvvvvvvvvvvvvvbb4444i	chr3:197243865-197244154(-)$1	289	125	148	21.6827
ddd[avvvvvvvvvvvvvadddd	chr5:134262627-134262877(+)$1	250	146	169	21.4870
eeeeettttttttttteeeeecc	chr17:26950819-26951078(-)$1	259	43	66	21.8151
"cccuuuuuuuuuuuuccc333f	chr12:123994486-123994733(-)$1	247	202	225	23.0739
gggggtttttttttttggggggg	chr1:154148601-154148826(-)$1	225	138	161	22.6169
$cccuuuuuuuuuuuuccc5555	chr1:2204108-2204334(+)$1	226	9	32	19.2635
dd[bbtttttttttttbb]dddd	chr2:27458059-27458314(+)$1	255	7	30	21.4734
c[bbuuuuuuuuuuuubbccccc	chr15:28356966-28357212(-)$1	246	52	75	22.0818
yyyyyyyyyyyyyyyyccc22ee	chr17:28951158-28951432(+)$1	274	75	98	18.7237
iiivvvvvvvvvvvvviiiiiii	chr19:19303600-19304011(+)$1	411	132	155	22.4324
hhhhhttttttttttthhhhhhh	chr1:19512934-19513169(-)$1	235	186	209	20.3509
!cccwwwwwwwwwwwwwwccc]f	chr16:2139265-2139572(-)$1	307	96	119	21.6070
ddwwwwwwwwwwwwwwdddd]gg	chr8:100513814-100514077(+)$1	263	15	38	20.5917
fffffyyyyyyyyyyyyyyyyff	chr12:123994378-123994686(-)$1	308	270	293	18.5516
eeccctttttttttttccc333e	chr12:49439636-49439850(-)$1	214	61	84	22.9641
eeeeeuuuuuuuuuuuueeeee:	chr17:73042917-73043159(-)$1	242	4	27	20.6912
ddddyyyyyyyyyyyyyyyyddd	chr12:123054127-123054404(+)$1	277	14	37	19.0220
dddvvvvvvvvvvvvvdddd333	chr10:21905941-21906172(+)$1	231	116	139	21.9504
!!ccctttttttttttccc22dd	chr3:184033077-184033354(+)$1	277	202	225	22.4715
fffffvvvvvvvvvvvvvfffff	chr5:73163617-73163913(+)$1	296	95	118	21.4199
fffffuuuuuuuuuuuuffffff	chr6:32157703-32157955(-)$1	252	192	215	21.7355
[ddddtttttttttttdddd]ee	chr10:93740165-93740405(+)$1	240	90	113	22.1340
iiibbtttttttttttbb22iii	chr17:75463036-75463290(+)$1	254	107	130	22.0311
iiivvvvvvvvvvvvviiiiiii	chr15:28491878-28492133(-)$1	255	179	202	22.4324
b[bbuuuuuuuuuuuubb]bb]i	chr17:8166411-8166666(+)$1	255	217	240	21.4196
[ddddtttttttttttdddd]cc	chr12:26864025-26864242(-)$1	217	172	195	22.2638
hhhhhuuuuuuuuuuuuhhhhhh	chr1:22175289-22175512(-)$1	223	164	187	20.4382
ggwwwwwwwwwwwwwwggggggg	chr15:25332551-25332825(+)$1	274	41	64	20.8692
gggggtttttttttttggggggg	chr12:3326362-3326631(+)$1	269	150	173	22.6169
fffffuuuuuuuuuuuuffffff	chr15:28356404-28356648(-)$1	244	196	219	21.7355
fffffuuuuuuuuuuuuffffff	chr12:26780865-26781138(-)$1	273	224	247	21.7355
f"""attttttttttta333fff	chr13:49688700-49688968(+)$1	268	184	207	22.6047
dddvvvvvvvvvvvvvdddd]ff	chr6:56351809-56352105(-)$1	296	237	260	21.8575
iiiiuuuuuuuuuuuuiiiiiii	chr15:25332626-25332847(+)$1	221	35	58	22.7770
[ddddtttttttttttdddd]cc	chr2:128848779-128849056(+)$1	277	233	256	22.2638

#otherMatches

#Seq PSSM
ACGGCGGUGGGGGAGGGGGCGGC	chr17:29058854-29059143(+)$1	289	65	88	21.3612
UUGCUAAUAAGAAACUGUUUCUG	chr15:28422467-28422705(-)$1	238	166	189	20.6029
AUGUGUUCUCUAUUAAUUCGCUU	chr17:35634750-35634997(-)$1	247	66	89	21.7761
AUUGAAGGCGCAAAAGUCAAAGU	chr15:28386640-28386875(-)$1	235	184	207	22.2326
CAGUGAGAAGUUAGUGGCGCUGC	chr5:139781379-139781629(+)$1	250	37	60	22.5718
GUCUGACCUUUCCCCAAAGAUAA	chr4:100495909-100496168(+)$1	259	18	41	20.7618
CUAAGACUGGUUUCUUCCUUAGC	chr1:19444227-19444488(-)$1	261	62	85	21.7355
AUUUUAUUCACAUUUAUAAAUAU	chr5:37027361-37027616(+)$1	255	43	66	23.1075
GAUGUUUUCAUGUUGUUCCGCCG	chr21:44269611-44269861(-)$1	250	87	110	19.2299
GCCUUUCCUGAUCCCUGUGGGCU	chr9:137271064-137271343(+)$1	279	0	23	19.5777
GUGAGACAAACAGACCCAGGAGG	chr3:197243782-197244065(-)$1	283	36	59	21.6827
UAUUGUUCCUCUGUUUUUCAUGG	chr2:47643334-47643581(+)$1	247	17	40	20.5087
UUCUCAGAUAGUGGAGGAGGACC	chr14:39645630-39645835(+)$1	205	107	130	21.8775
GCUGCAAACACUAACCCAGCAGU	chr12:132248995-132249307(+)$1	312	142	165	21.3724
CUUCCAGAACCCACGUGGCCUCC	chr9:116997819-116998032(+)$1	213	5	28	20.8692
CCCCAGAUUUUGUCCAGCGGGGC	chr6:144780374-144780590(+)$1	216	20	43	20.7583
GAAAUCCUCCUCUUUCUGUUUUA	chr2:61449664-61449884(-)$1	220	62	85	22.5718
AACCCAGAACCCUUACGGUUUCU	chr11:77790663-77790977(-)$1	314	202	225	21.1876
uccccauccccaUCCUGAUGUUG	chr7:100282376-100282608(-)$1	232	24	47	19.8889
GGGCCACUGUGGACCCAGGCCCA	chr7:157611776-157612111(-)$1	335	282	305	21.7355
uggagaagguaagaaagacucua	chr8:9628373-9628677(+)$1	304	113	136	21.3724
UGAGCAGCACAUUAAAGCUCACG	chr12:123067170-123067422(+)$1	252	146	169	22.6169
AAGAGCACAGACACUUCUCUUGC	chr8:100205003-100205221(+)$1	218	169	192	21.4773
UCCAAUCCCUUUCCCUUUGGCUA	chr16:16421913-16422158(+)$1	245	8	31	20.0560
GUGAGACAAACAGACCCAGGAGG	chr3:197243865-197244154(-)$1	289	125	148	21.6827
GCGACUAUGAGAAUGACUGCGCC	chr5:134262627-134262877(+)$1	250	146	169	21.4870
ACUAACCUCAUCGUCCUUGGUAG	chr17:26950819-26951078(-)$1	259	43	66	21.8151
UGCCCCACACAUGCCAGGCCUCG	chr12:123994486-123994733(-)$1	247	202	225	23.0739
CAGCUGGUUGAAGAAGAGCUGGA	chr1:154148601-154148826(-)$1	225	138	161	22.6169
UUAAUGUAGAAUGUUUUUAUCAA	chr1:2204108-2204334(+)$1	226	9	32	19.2635
GGUCCUCUCACACCUUGGCCCUC	chr2:27458059-27458314(+)$1	255	7	30	21.4734
CCAGACCACUUCCUCCCUGAGUC	chr15:28356966-28357212(-)$1	246	52	75	22.0818
UACUUUAAAACAAUCCUGCGAAC	chr17:28951158-28951432(+)$1	274	75	98	18.7237
AGCGGUCGAGUAUCAAGUUGCUU	chr19:19303600-19304011(+)$1	411	132	155	22.4324
GGAGUGUUCUCAGCAGAUUCCUG	chr1:19512934-19513169(-)$1	235	186	209	20.3509
UGCUAAUUUAUUUCCCCGAGUCC	chr16:2139265-2139572(-)$1	307	96	119	21.6070
AAUUUCUGAUUUUAAUUUAUAAU	chr8:100513814-100514077(+)$1	263	15	38	20.5917
UUUCCUUUUAAACAUUCUGGUGG	chr12:123994378-123994686(-)$1	308	270	293	18.5516
CAGGACCUCAGCCACCUCCGUUU	chr12:49439636-49439850(-)$1	214	61	84	22.9641
CAGCCCUCAUCUCUAUUGGCUGA	chr17:73042917-73043159(-)$1	242	4	27	20.6912
UGACUUCCUAAAAUAUCUUUGUC	chr12:123054127-123054404(+)$1	277	14	37	19.0220
AUCUAAUAGGUCAUAUGAUCAAA	chr10:21905941-21906172(+)$1	231	116	139	21.9504
CUCGGAUGCCCAGAACCUGUAGG	chr3:184033077-184033354(+)$1	277	202	225	22.4715
GAGACAUCCCACAGCCUGGUCUC	chr5:73163617-73163913(+)$1	296	95	118	21.4199
UUUGGGGGGAGAAGUAACCAGGC	chr6:32157703-32157955(-)$1	252	192	215	21.7355
CACAUUUUUCAGUUCUGUGUUUU	chr10:93740165-93740405(+)$1	240	90	113	22.1340
UCCCGAAUCACUCUUCCGCUGGG	chr17:75463036-75463290(+)$1	254	107	130	22.0311
AGCAUUGCUUCUACCAGCUGGCG	chr15:28491878-28492133(-)$1	255	179	202	22.4324
UGCCAGGUUUCGUUUAGGGAGAG	chr17:8166411-8166666(+)$1	255	217	240	21.4196
ACUCUGAAUUAGUGAAAGAGGCA	chr12:26864025-26864242(-)$1	217	172	195	22.2638
GGGGGACCCCGACUGCACCCUCA	chr1:22175289-22175512(-)$1	223	164	187	20.4382
UGUUUCCUCUGCACUUCACAGGU	chr15:25332551-25332825(+)$1	274	41	64	20.8692
AGAGACACCCUCAGCUUCUCUGA	chr12:3326362-3326631(+)$1	269	150	173	22.6169
GUUUAUUAAAAGACUUUUGAACA	chr15:28356404-28356648(-)$1	244	196	219	21.7355
UGAAAGUACCUAUCAUAUUUUAA	chr12:26780865-26781138(-)$1	273	224	247	21.7355
UUUUCUUUUCAUAUUUGUAUAAU	chr13:49688700-49688968(+)$1	268	184	207	22.6047
GUAGACCUCUUUCAAAUACACAG	chr6:56351809-56352105(-)$1	296	237	260	21.8575
UCUUGUCUGAUUCUUGGAGAUGG	chr15:25332626-25332847(+)$1	221	35	58	22.7770
GCCUCGUGGACAAAGAGAGGGUU	chr2:128848779-128849056(+)$1	277	233	256	22.2638

#DB
.((.(............).))))	chr17:29058854-29059143(+)$1	1	65	88	21.3612
..((............))....)	chr15:28422467-28422705(-)$1	1	166	189	20.6029
(.(((.............))).)	chr17:35634750-35634997(-)$1	1	66	89	21.7761
.((((...........)))).))	chr15:28386640-28386875(-)$1	1	184	207	22.2326
(((((............))))))	chr5:139781379-139781629(+)$1	1	37	60	22.5718
((((.............)))).(	chr4:100495909-100496168(+)$1	1	18	41	20.7618
(((((............))))))	chr1:19444227-19444488(-)$1	1	62	85	21.7355
((((.............))))))	chr5:37027361-37027616(+)$1	1	43	66	23.1075
((..............)))))))	chr21:44269611-44269861(-)$1	1	87	110	19.2299
((((..............)))).	chr9:137271064-137271343(+)$1	1	0	23	19.5777
.((.............))....)	chr3:197243782-197244065(-)$1	1	36	59	21.6827
(((................))))	chr2:47643334-47643581(+)$1	1	17	40	20.5087
(((((...........)))))..	chr14:39645630-39645835(+)$1	1	107	130	21.8775
(((((.............)))))	chr12:132248995-132249307(+)$1	1	142	165	21.3724
((..............)))))))	chr9:116997819-116998032(+)$1	1	5	28	20.8692
((((..............)))))	chr6:144780374-144780590(+)$1	1	20	43	20.7583
(((((............))))))	chr2:61449664-61449884(-)$1	1	62	85	22.5718
((.((...........)).))))	chr11:77790663-77790977(-)$1	1	202	225	21.1876
((..............))))..)	chr7:100282376-100282608(-)$1	1	24	47	19.8889
(((((............))))))	chr7:157611776-157612111(-)$1	1	282	305	21.7355
(((((.............)))))	chr8:9628373-9628677(+)$1	1	113	136	21.3724
(((((...........)))))))	chr12:123067170-123067422(+)$1	1	146	169	22.6169
(((((...........)))))).	chr8:100205003-100205221(+)$1	1	169	192	21.4773
.((((...........)))(((.	chr16:16421913-16422158(+)$1	1	8	31	20.0560
.((.............))....)	chr3:197243865-197244154(-)$1	1	125	148	21.6827
(((.(.............)))))	chr5:134262627-134262877(+)$1	1	146	169	21.4870
(((((...........)))))))	chr17:26950819-26951078(-)$1	1	43	66	21.8151
.(((............)))...)	chr12:123994486-123994733(-)$1	1	202	225	23.0739
(((((...........)))))))	chr1:154148601-154148826(-)$1	1	138	161	22.6169
.(((............)))....	chr1:2204108-2204334(+)$1	1	9	32	19.2635
((.((...........)).))))	chr2:27458059-27458314(+)$1	1	7	30	21.4734
(.((............)))))))	chr15:28356966-28357212(-)$1	1	52	75	22.0818
................)))..))	chr17:28951158-28951432(+)$1	1	75	98	18.7237
(((.............)))))))	chr19:19303600-19304011(+)$1	1	132	155	22.4324
(((((...........)))))))	chr1:19512934-19513169(-)$1	1	186	209	20.3509
.(((..............))).)	chr16:2139265-2139572(-)$1	1	96	119	21.6070
((..............)))).))	chr8:100513814-100514077(+)$1	1	15	38	20.5917
(((((................))	chr12:123994378-123994686(-)$1	1	270	293	18.5516
(((((...........)))...)	chr12:49439636-49439850(-)$1	1	61	84	22.9641
(((((............))))).	chr17:73042917-73043159(-)$1	1	4	27	20.6912
((((................)))	chr12:123054127-123054404(+)$1	1	14	37	19.0220
(((.............))))...	chr10:21905941-21906172(+)$1	1	116	139	21.9504
..(((...........)))..))	chr3:184033077-184033354(+)$1	1	202	225	22.4715
(((((.............)))))	chr5:73163617-73163913(+)$1	1	95	118	21.4199
(((((............))))))	chr6:32157703-32157955(-)$1	1	192	215	21.7355
.((((...........)))).))	chr10:93740165-93740405(+)$1	1	90	113	22.1340
(((((...........))..)))	chr17:75463036-75463290(+)$1	1	107	130	22.0311
(((.............)))))))	chr15:28491878-28492133(-)$1	1	179	202	22.4324
(.((............)).)).)	chr17:8166411-8166666(+)$1	1	217	240	21.4196
.((((...........)))).))	chr12:26864025-26864242(-)$1	1	172	195	22.2638
(((((............))))))	chr1:22175289-22175512(-)$1	1	164	187	20.4382
((..............)))))))	chr15:25332551-25332825(+)$1	1	41	64	20.8692
(((((...........)))))))	chr12:3326362-3326631(+)$1	1	150	173	22.6169
(((((............))))))	chr15:28356404-28356648(-)$1	1	196	219	21.7355
(((((............))))))	chr12:26780865-26781138(-)$1	1	224	247	21.7355
(...(...........)...)))	chr13:49688700-49688968(+)$1	1	184	207	22.6047
(((.............)))).))	chr6:56351809-56352105(-)$1	1	237	260	21.8575
((((............)))))))	chr15:25332626-25332847(+)$1	1	35	58	22.7770
.((((...........)))).))	chr2:128848779-128849056(+)$1	1	233	256	22.2638

#PSSM
d : 0.15	f : 0.15	g : 0.11	e : 0.11	[ : 0.08	h : 0.06	i : 0.06	" : 0.05	b : 0.03	= : 0.03	! : 0.03	% : 0.01	K : 0.01	$ : 0.01	c : 0.01	y : 0.01	
d : 0.22	f : 0.13	g : 0.11	e : 0.11	h : 0.06	i : 0.06	b : 0.05	[ : 0.05	c : 0.05	= : 0.03	% : 0.01	A : 0.01	y : 0.01	! : 0.01	" : 0.01	
d : 0.16	f : 0.13	c : 0.11	b : 0.10	e : 0.10	g : 0.08	w : 0.08	i : 0.06	= : 0.03	[ : 0.03	h : 0.03	y : 0.01	" : 0.01	
f : 0.13	c : 0.11	d : 0.11	b : 0.10	v : 0.10	e : 0.10	g : 0.08	w : 0.08	[ : 0.03	y : 0.03	h : 0.03	= : 0.01	" : 0.01	i : 0.01	
v : 0.13	f : 0.13	w : 0.13	u : 0.10	g : 0.08	e : 0.08	c : 0.06	d : 0.06	a : 0.05	y : 0.05	b : 0.05	h : 0.03	
t : 0.30	u : 0.27	v : 0.22	w : 0.13	y : 0.06	
t : 0.30	u : 0.27	v : 0.22	w : 0.13	y : 0.06	
t : 0.30	u : 0.27	v : 0.22	w : 0.13	y : 0.06	
t : 0.30	u : 0.27	v : 0.22	w : 0.13	y : 0.06	
t : 0.30	u : 0.27	v : 0.22	w : 0.13	y : 0.06	
t : 0.30	u : 0.27	v : 0.22	w : 0.13	y : 0.06	
t : 0.30	u : 0.27	v : 0.22	w : 0.13	y : 0.06	
t : 0.30	u : 0.27	v : 0.22	w : 0.13	y : 0.06	
t : 0.30	u : 0.27	v : 0.22	w : 0.13	y : 0.06	
t : 0.30	u : 0.27	v : 0.22	w : 0.13	y : 0.06	
t : 0.30	u : 0.27	v : 0.22	w : 0.13	y : 0.06	
u : 0.16	b : 0.13	d : 0.13	v : 0.11	c : 0.10	g : 0.08	w : 0.05	y : 0.05	i : 0.05	h : 0.03	e : 0.03	f : 0.01	a : 0.01	
d : 0.15	b : 0.13	g : 0.11	f : 0.10	c : 0.10	v : 0.08	h : 0.05	w : 0.05	y : 0.05	e : 0.05	i : 0.05	a : 0.01	= : 0.01	3 : 0.01	
d : 0.16	c : 0.15	g : 0.11	f : 0.11	e : 0.10	] : 0.06	4 : 0.05	h : 0.05	y : 0.05	i : 0.05	= : 0.01	a : 0.01	2 : 0.01	3 : 0.01	
d : 0.20	g : 0.11	f : 0.11	e : 0.10	c : 0.06	h : 0.06	4 : 0.05	3 : 0.05	2 : 0.05	i : 0.05	b : 0.03	= : 0.03	y : 0.03	5 : 0.01	
f : 0.13	g : 0.11	] : 0.10	e : 0.10	d : 0.08	c : 0.06	h : 0.06	i : 0.06	4 : 0.05	2 : 0.05	3 : 0.05	b : 0.03	= : 0.03	5 : 0.01	y : 0.01	
f : 0.18	g : 0.13	e : 0.10	d : 0.08	c : 0.08	h : 0.06	3 : 0.06	i : 0.06	4 : 0.05	] : 0.05	= : 0.03	b : 0.01	: : 0.01	2 : 0.01	5 : 0.01	
f : 0.22	g : 0.13	i : 0.11	e : 0.10	d : 0.08	h : 0.06	c : 0.06	b : 0.05	= : 0.03	: : 0.03	3 : 0.03	2 : 0.01	n : 0.01	5 : 0.01	

#score	1264.120536396887
#seq	59
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_UTR_m1_run1.txt

#BEAR
==="""dddd$$$$$cccoooooocccdddd333======	chr19:18653592-18653884(-)$1	292	246	286	16.0553
bb[ccc"""bb!!eeeeeooooooeeeee22bb4444ccc	chr1:154975026-154975265(+)$1	239	132	172	12.5964
==========!!ffffffnnnnnffffff333========	chr5:126172518-126172751(+)$1	233	33	73	16.6707
####ggggggg"""ddddoooooodddd4444ggggggg2	chr11:66025149-66025438(+)$1	289	217	257	15.7127
ee$$$$$eeeee!!ddddnnnnndddd]eeeee333eeee	chr12:120532912-120533173(-)$1	261	4	44	12.4873
ddddccc[bb[bb!!cccnnnnnccc22bb]bbccc]ddd	chr2:191513660-191513958(+)$1	298	189	229	14.3962
iiiiiii"""bb"""ddddlllddddbb333iiiiiiiii	chr11:62482660-62482885(-)$1	225	73	113	14.8583
G:ffffff"""a!!ddddnnnnndddd22a4444ffffff	chr1:155532302-155532602(-)$1	300	67	107	13.2063
hhhhhhhh[a[a[a[cccnnnnnccc]a]a]a]hhhhhhh	chr14:100704549-100704832(-)$1	283	126	166	14.8922
====[a!!ffffff[cccooooooccc333ffffff22a]	chr7:127671019-127671288(+)$1	269	19	59	15.8280
======[cccccc[ddddnnnnndddd]ccc22ccc333=	chr2:220403023-220403372(+)$1	349	261	301	15.7153
==========%%%%%%cccmmmmccc4444==========	chr20:33872266-33872573(-)$1	307	84	124	13.0363
##a!!ffffff####cccooooooccc4444ffffff22a	chr19:6739609-6739897(+)$1	288	159	199	15.9835
============####ccclllccc22=============	chr12:48438529-48438797(-)$1	268	7	47	16.8665
$$$$dddd[a"""a[cccooooooccc]a333addddddd	chr6:31626692-31626983(-)$1	291	223	263	15.3202
dd[bb[bb[a[gggggggnnnnnggggggg]a]bb]bb44	chr14:23791032-23791299(+)$1	267	11	51	13.1356
:gggggggccc!!a[cccmmmmccc]a4444ccc22gggg	chr12:52388747-52389029(+)$1	282	122	162	13.1058
[============a[ccca!!dddd[a!!==========!	chr9:139560092-139560361(+)$1	269	129	169	11.8692
""ccc[ccc[bb"""cccmmmmccc22bb]cccccc22dd	chr3:45730807-45731097(+)$1	290	69	109	12.4106
!dddd[ggggggg!!aaooooooa]a22gggggggdddd=	chr17:62501944-62502240(-)$1	296	113	153	14.3468
[ccc[bb[ccc####bb[ammmma]bb333cccbb]ccc2	chr19:12832950-12833220(-)$1	270	202	242	12.9269
ff"""ccc[cccbb[a[annnnna]a]bb22ccc]ccc33	chr19:52074540-52074833(+)$1	293	133	173	15.0400
!!eeeee!!ffffff[bboooooobb22ffffff22eeee	chr1:150237741-150238027(-)$1	286	12	52	11.6711
gggg[bb[a!!dddd[bbnnnnnbb]dddd4444a]bb]g	chr3:15901008-15901280(-)$1	272	170	210	13.2020
###ccc[eeeee"""bboooooobb22eeeee]ccc4444	chr6:29600363-29600664(-)$1	301	161	201	14.1208
"""ccc"""iiiiiiiiinnnnniiiiiiiii22ccc333	chr16:30535373-30535638(-)$1	265	15	55	15.9047
========[cccvvvvvvvvvvvvvccc]===========	chr2:97525574-97525846(-)$1	272	221	261	11.6186
========[a[bb!!ddddllldddd22bb]a]=======	chr1:226032892-226033174(-)$1	282	60	100	14.7857
hhhhccciiiiiiiii[aooooooa]iiiiiiiii]ccc]	chr2:20527031-20527240(-)$1	209	37	77	14.3261
h[a"""a[a[dddd[cccnnnnnccc]dddd]a]a333a]	chr1:117663992-117664277(-)$1	285	215	255	15.8520
iiiiii!!ffffff[ccclllcccffffff4444iiiiii	chr10:21823275-21823535(+)$1	260	13	53	13.7875
c[eeeee####gggggggnnnnngggggggeeeee]ccc]	chr11:126146105-126146396(+)$1	291	149	189	13.7882
iiiiiiiii!!a!!ddddnnnnndddd22a]iiiiiiiii	chr19:1104362-1104640(+)$1	278	192	232	17.0299
a[a[ffffff[a[eeeeennnnneeeee]affffff]a]a	chr16:30537571-30537843(-)$1	272	24	64	12.8736
bbeeeee[bb[ccc[cccnnnnncccccc22bb22eeeee	chr4:1019068-1019393(+)$1	325	76	116	13.6701
iiiiiii[a!!ccc[cccnnnnnccc]ccc22aiiiiiii	chr20:60709720-60709992(+)$1	272	204	244	17.9719
fffff"""ccc"""cccannnnna]ccc]ccc]ffffff2	chr19:2426226-2426442(-)$1	216	132	172	15.6574
hhhhhhh!!ccc"""cccnnnnncccccchhhhhhhhccc	chr9:137023898-137024185(+)$1	287	184	224	14.3936
eee[eeeee[ccc[bb[annnnna]bb]ccc]eeeeeeee	chr7:65338184-65338415(+)$1	231	152	192	13.0885
ee[ccc####ccc[bb[annnnna]bb]ccc]ccceeeee	chr17:54968733-54969012(-)$1	279	119	159	14.5182
========[eeeee[bboooooobb22eeeee22======	chr7:151216135-151216400(-)$1	265	62	102	14.3120
[a[dddd[dddd[a[cccooooooccc]a333dddd]ddd	chr14:105259242-105259496(-)$1	254	68	108	15.1676
============"""cccnnnnnccc4444==========	chr7:98993967-98994235(-)$1	268	64	104	20.3228
ddddeeeeeccc"""cccnnnnnccc333ccc]eeeeebb	chr1:38273924-38274304(+)$1	380	306	346	15.5370
ddd[ccc####a"""cccnnnnnccc22a4444ccc]ddd	chr19:3062177-3062445(-)$1	268	78	118	18.0238
e!!ffffff[dddd[cccnnnnnccc]dddd]ffffff22	chr19:40825988-40826246(-)$1	258	134	174	13.8066
d]bb:ccc[ccc"""bboooooobb333ccc]cccbb[ee	chr2:159313411-159313677(+)$1	266	104	144	12.9465
ffff[ffffff[ccccccnnnnnccc333ccc]ffffff]	chr17:55333900-55334155(+)$1	255	39	79	15.1686
ffff[a[eeeee!!cccooooooccceeeee]a]ffffff	chr16:69419254-69419551(-)$1	297	241	281	13.6935
[ccc"""dddd[ccccccooooooccc333ccc]dddd]c	chr6:30852132-30852402(+)$1	270	118	158	14.9629
ggggg[a[a!!a!!cccooooooccc22a22a]a]ggggg	chr12:56632204-56632450(-)$1	246	87	127	17.5169
gg"""a[==========aooooooa]==========]a33	chr19:7978318-7978586(+)$1	268	89	129	17.0452
ccc[dddd"""ffffffooooooffffff333dddd]ccc	chr16:88922823-88923079(-)$1	256	21	61	12.6913
gg[eeeeedddd!!cccooooooccc>>>>>>>>>>>>>>	chr12:123998003-123998298(-)$1	295	70	110	12.1704

#otherMatches

#Seq PSSM
GCUUGGGGCCUGGGGGACGGAGGGGUUGGUUAUUGGUUCA	chr19:18653592-18653884(-)$1	292	246	286	16.0553
ACAGGUGAGGCGGGCCCUGAGGGGGGGGCGGGUGGGAGCC	chr1:154975026-154975265(+)$1	239	132	172	12.5964
UCUUCUCUUAGAUUCUUAAUUCAUGAGGAGGGUGGGGGAG	chr5:126172518-126172751(+)$1	233	33	73	16.6707
GAGACGGGGUCAGGCCCUAAAGCGGGGGAGGAGACUCCGG	chr11:66025149-66025438(+)$1	289	217	257	15.7127
CAUGGCUUCUGGCAGCUGGACAUCAGCCCCAGGUAUUGGG	chr12:120532912-120533173(-)$1	261	4	44	12.4873
cgccgccgcggccAAGCGAGCGCCGUCGGGGCGGGUGGGC	chr2:191513660-191513958(+)$1	298	189	229	14.3962
CGAUACUACAGGAAUUACUACGGGUACCAAGGGUAUCGGU	chr11:62482660-62482885(-)$1	225	73	113	14.8583
CAGGGCCUGAGGGGUAGUGAGGGACUGGACGAGGGGGUUC	chr1:155532302-155532602(-)$1	300	67	107	13.2063
ggggccgcgcggggagcggcuggcgcgugcggggcggccc	chr14:100704549-100704832(-)$1	283	126	166	14.8922
CAUUCCGACUUCUUAGUUUUAAUUAACAAAAGGGGGAAGU	chr7:127671019-127671288(+)$1	269	19	59	15.8280
GGGGAGAGGAUGGCCCAGCAGGCCUGGCCCAGCUCCCAGU	chr2:220403023-220403372(+)$1	349	261	301	15.7153
GUCCUGGGUCGGGAGGGGUGGGGGCCAGAGGAUUCAGGGC	chr20:33872266-33872573(-)$1	307	84	124	13.0363
CAGCAUGGAUUGGGGCACUGAGCUGUGGGUAAGUCCAAUC	chr19:6739609-6739897(+)$1	288	159	199	15.9835
AUGGGACUGAGAAAAGCUUGGAAAGAAUCUUGGUUUCAUA	chr12:48438529-48438797(-)$1	268	7	47	16.8665
GGGACCUCAGGGAUGGGGAAGAAACCCGAGUACGAGGGUG	chr6:31626692-31626983(-)$1	291	223	263	15.3202
gcgagcgagcaggccggcggcuggccggccgggucacugg	chr14:23791032-23791299(+)$1	267	11	51	13.1356
UCUUGGGUGUUAGUGUCAGCCAUGGGAAAUGAGCCAGCCC	chr12:52388747-52389029(+)$1	282	122	162	13.1058
gggcucgggcggcaguggcggcggcgcgugcgcgccccgg	chr9:139560092-139560361(+)$1	269	129	169	11.8692
GGGUGACCGGUAGAGUUGUAGCCGAGGUggcggcgcgggg	chr3:45730807-45731097(+)$1	290	69	109	12.4106
GCCGGCGGGGGCUUUGCGGCUUGGACUUGGCCUUUCCGGG	chr17:62501944-62502240(-)$1	296	113	153	14.3468
GGAGGGGAUCUGAUUGGGGGAAGCGUCUGGGGACUGCUUG	chr19:12832950-12833220(-)$1	270	202	242	12.9269
UUGGGGGUGGGGGUGCGUGAUAAAGGGAUUUCUCGGCUGA	chr19:52074540-52074833(+)$1	293	133	173	15.0400
AGCUGGCCACUCCAGAGCUGCAGUGCCACUGGAGGAGUCA	chr1:150237741-150238027(-)$1	286	12	52	11.6711
ggcggcggcggcggcggcggcgggcggccggggaggcggc	chr3:15901008-15901280(-)$1	272	170	210	13.2020
GGAUGGAAUCGGGGAGCGCUGAGGCGGCCGAUGCCGGGAG	chr6:29600363-29600664(-)$1	301	161	201	14.1208
AAAUGGAGAGAGGUCAGCGGAGGGCUGGCCUCAGCCGCGG	chr16:30535373-30535638(-)$1	265	15	55	15.9047
AGAGGGUGGGCCUGCUGUGGACAAUGGCAUACUCUCUUCC	chr2:97525574-97525846(-)$1	272	221	261	11.6186
UCUUCCCCAAGAAAAGCCUGGAGGGCACUUGUGGGGGGAG	chr1:226032892-226033174(-)$1	282	60	100	14.7857
AAAUAGUUGAAGAAGUCUGUUUAAACAUUUCUUUGUACUA	chr2:20527031-20527240(-)$1	209	37	77	14.3261
CGUGGGCGUGUCUGGUGUGGGAUGCAGUGGAAAGGAGGGG	chr1:117663992-117664277(-)$1	285	215	255	15.8520
UCUCCGGGCGCCCGCGUUAGCGGCCGGGUGGAGGUGGGGA	chr10:21823275-21823535(+)$1	260	13	53	13.7875
UUUCUGCAGUUCGUAACCGCACUGGUUGUGGCAGGUAUGU	chr11:126146105-126146396(+)$1	291	149	189	13.7882
GGGGGCGCGGAGGGCUGGAAAUCCCGGAUCAcgcgccccc	chr19:1104362-1104640(+)$1	278	192	232	17.0299
CGGGGGCCCGCGGCUCGGGGCAACCGAGGCCGGGUCGCGG	chr16:30537571-30537843(-)$1	272	24	64	12.8736
UAUCUGCAGUGGGCACGGGGGGGCCGGCCAGACAGGCAGA	chr4:1019068-1019393(+)$1	325	76	116	13.6701
UUGGGGUUGGAGCCUGGGAUGAGCCCCGGCAGCGCCUUGG	chr20:60709720-60709992(+)$1	272	204	244	17.9719
GCACCAGGCAGGUGGUCCUCGCUGUGACACUGAGGUGCUG	chr19:2426226-2426442(-)$1	216	132	172	15.6574
GAGUCCCUUACUCCAGGUCAGAUGCCAGUGGGACUCAUGC	chr9:137023898-137024185(+)$1	287	184	224	14.3936
cggcggcggcggcggcggGAAGAUGGCGGCUCCCGUCCUG	chr7:65338184-65338415(+)$1	231	152	192	13.0885
UGAGAGUGAUUGUGUUGUGGGCGAGGAGGCGUUUCCACCC	chr17:54968733-54969012(-)$1	279	119	159	14.5182
cccuccgcgggccgggcgggcagguggcggccgggcggag	chr7:151216135-151216400(-)$1	265	62	102	14.3120
GUGAUUUGUCCAACGGCUGGGGGAGGUGGGAAUGGGGAGG	chr14:105259242-105259496(-)$1	254	68	108	15.1676
CCUCUUCAUCUUGGCACAGAAAUUGUUUGGGGGAUGGGGG	chr7:98993967-98994235(-)$1	268	64	104	20.3228
GCGGGGCUGGGGCUCGGCGGGAGGCCACCCCCACAGCCGC	chr1:38273924-38274304(+)$1	380	306	346	15.5370
cgcgcggggagggggcgcaggaagcgggcgaggccgggcg	chr19:3062177-3062445(-)$1	268	78	118	18.0238
cacugcagcaguccaggcaggaagccaggauggcugcgag	chr19:40825988-40826246(-)$1	258	134	174	13.8066
cACCAUGGGCAAGGGGUAGAGGGGCAAGUUGGCCACCGCC	chr2:159313411-159313677(+)$1	266	104	144	12.9465
GCCCCGGCUCCGCCGCUCGCAGAGAGAUUCGGAGGAGCCC	chr17:55333900-55334155(+)$1	255	39	79	15.1686
AGAAGGGGAAAAUUUAGGUAUGGCUAUUUUUGUGUUCUUC	chr16:69419254-69419551(-)$1	297	241	281	13.6935
aggcgagggggaggcggCGCCUGGGCCCGAGCCGCCCCAG	chr6:30852132-30852402(+)$1	270	118	158	14.9629
GGGGUGGGUGGGAGGGGAGGGUGCCUGGCAGAGCAGCCCC	chr12:56632204-56632450(-)$1	246	87	127	17.5169
ggcugagggugggggugcgagguggUCACUCCCAUCGUGC	chr19:7978318-7978586(+)$1	268	89	129	17.0452
GUGAGGGGAGGCCCCUUGGGGAAGGGGGGAGGCCCCGCGC	chr16:88922823-88923079(-)$1	256	21	61	12.6913
GGAGGCCUGGUCUUUCCGUAUCAGGAUAAAAUGACUUAGA	chr12:123998003-123998298(-)$1	295	70	110	12.1704

#DB
(((...((((.....(((......)))))))...))))))	chr19:18653592-18653884(-)$1	1	246	286	16.0553
((.(((...((..(((((......)))))..))....)))	chr1:154975026-154975265(+)$1	1	132	172	12.5964
((((((((((..((((((.....))))))...))))))))	chr5:126172518-126172751(+)$1	1	33	73	16.6707
....(((((((...((((......))))....))))))).	chr11:66025149-66025438(+)$1	1	217	257	15.7127
((.....(((((..((((.....)))).)))))...))))	chr12:120532912-120533173(-)$1	1	4	44	12.4873
(((((((.((.((..(((.....)))..)).))))).)))	chr2:191513660-191513958(+)$1	1	189	229	14.3962
(((((((...((...((((...))))))...)))))))))	chr11:62482660-62482885(-)$1	1	73	113	14.8583
(.((((((...(..((((.....))))..)....))))))	chr1:155532302-155532602(-)$1	1	67	107	13.2063
((((((((.(.(.(.(((.....))).).).).)))))))	chr14:100704549-100704832(-)$1	1	126	166	14.8922
((((.(..((((((.(((......)))...))))))..).	chr7:127671019-127671288(+)$1	1	19	59	15.8280
((((((.((((((.((((.....)))).)))..)))...)	chr2:220403023-220403372(+)$1	1	261	301	15.7153
((((((((((......(((....)))....))))))))))	chr20:33872266-33872573(-)$1	1	84	124	13.0363
..(..((((((....(((......)))....))))))..)	chr19:6739609-6739897(+)$1	1	159	199	15.9835
((((((((((((....(((...)))..)))))))))))))	chr12:48438529-48438797(-)$1	1	7	47	16.8665
....((((.(...(.(((......))).)...))))))))	chr6:31626692-31626983(-)$1	1	223	263	15.3202
((.((.((.(.(((((((.....))))))).).)).))..	chr14:23791032-23791299(+)$1	1	11	51	13.1356
.((((((((((..(.(((....))).)....)))..))))	chr12:52388747-52389029(+)$1	1	122	162	13.1058
.(((((((((((((.((((..((((.(..((((((((((.	chr9:139560092-139560361(+)$1	1	129	169	11.8692
..(((.(((.((...(((....)))..)).))))))..))	chr3:45730807-45731097(+)$1	1	69	109	12.4106
.((((.(((((((..((......).)..))))))))))))	chr17:62501944-62502240(-)$1	1	113	153	14.3468
.(((.((.(((....((.(....).))...))))).))).	chr19:12832950-12833220(-)$1	1	202	242	12.9269
((...(((.(((((.(.(.....).).))..))).)))..	chr19:52074540-52074833(+)$1	1	133	173	15.0400
..(((((..((((((.((......))..))))))..))))	chr1:150237741-150238027(-)$1	1	12	52	11.6711
((((.((.(..((((.((.....)).))))....).)).)	chr3:15901008-15901280(-)$1	1	170	210	13.2020
...(((.(((((...((......))..))))).)))....	chr6:29600363-29600664(-)$1	1	161	201	14.1208
...(((...(((((((((.....)))))))))..)))...	chr16:30535373-30535638(-)$1	1	15	55	15.9047
((((((((.(((.............))).)))))))))))	chr2:97525574-97525846(-)$1	1	221	261	11.6186
((((((((.(.((..((((...))))..)).).)))))))	chr1:226032892-226033174(-)$1	1	60	100	14.7857
((((((((((((((((.(......).))))))))).))).	chr2:20527031-20527240(-)$1	1	37	77	14.3261
(.(...(.(.((((.(((.....))).)))).).)...).	chr1:117663992-117664277(-)$1	1	215	255	15.8520
((((((..((((((.(((...)))))))))....))))))	chr10:21823275-21823535(+)$1	1	13	53	13.7875
(.(((((....(((((((.....)))))))))))).))).	chr11:126146105-126146396(+)$1	1	149	189	13.7882
(((((((((..(..((((.....))))..).)))))))))	chr19:1104362-1104640(+)$1	1	192	232	17.0299
(.(.((((((.(.(((((.....))))).))))))).).)	chr16:30537571-30537843(-)$1	1	24	64	12.8736
(((((((.((.(((.(((.....))))))..))..)))))	chr4:1019068-1019393(+)$1	1	76	116	13.6701
(((((((.(..(((.(((.....))).)))..))))))))	chr20:60709720-60709992(+)$1	1	204	244	17.9719
(((((...(((...((((.....).))).))).)))))).	chr19:2426226-2426442(-)$1	1	132	172	15.6574
(((((((..(((...(((.....))))))))))))))(((	chr9:137023898-137024185(+)$1	1	184	224	14.3936
(((.(((((.(((.((.(.....).)).))).))))))))	chr7:65338184-65338415(+)$1	1	152	192	13.0885
((.(((....(((.((.(.....).)).))).))))))))	chr17:54968733-54969012(-)$1	1	119	159	14.5182
((((((((.(((((.((......))..)))))..))))))	chr7:151216135-151216400(-)$1	1	62	102	14.3120
.(.((((.((((.(.(((......))).)...)))).)))	chr14:105259242-105259496(-)$1	1	68	108	15.1676
((((((((((((...(((.....)))....))))))))))	chr7:98993967-98994235(-)$1	1	64	104	20.3228
))))((((((((...(((.....)))...))).)))))((	chr1:38273924-38274304(+)$1	1	306	346	15.5370
(((.(((....(...(((.....)))..)....))).)))	chr19:3062177-3062445(-)$1	1	78	118	18.0238
(..((((((.((((.(((.....))).)))).))))))..	chr19:40825988-40826246(-)$1	1	134	174	13.8066
).)).(((.(((...((......))...))).)))((.((	chr2:159313411-159313677(+)$1	1	104	144	12.9465
((((.((((((.((((((.....)))...))).)))))).	chr17:55333900-55334155(+)$1	1	39	79	15.1686
((((.(.(((((..(((......)))))))).).))))))	chr16:69419254-69419551(-)$1	1	241	281	13.6935
.(((...((((.((((((......)))...))).)))).)	chr6:30852132-30852402(+)$1	1	118	158	14.9629
(((((.(.(..(..(((......)))..)..).).)))))	chr12:56632204-56632450(-)$1	1	87	127	17.5169
((...(.(((((((((((......).)))))))))).)..	chr19:7978318-7978586(+)$1	1	89	129	17.0452
(((.((((...((((((......))))))...)))).)))	chr16:88922823-88923079(-)$1	1	21	61	12.6913
((.(((((((((..(((......)))..............	chr12:123998003-123998298(-)$1	1	70	110	12.1704

#PSSM
= : 0.18	d : 0.09	e : 0.07	i : 0.07	h : 0.07	[ : 0.07	f : 0.07	g : 0.07	# : 0.05	b : 0.03	" : 0.03	! : 0.03	c : 0.03	G : 0.01	$ : 0.01	: : 0.01	a : 0.01	
= : 0.20	d : 0.09	g : 0.09	i : 0.07	f : 0.07	# : 0.05	e : 0.05	h : 0.05	c : 0.05	[ : 0.05	b : 0.03	" : 0.03	! : 0.03	: : 0.01	$ : 0.01	a : 0.01	] : 0.01	
= : 0.20	[ : 0.09	d : 0.07	i : 0.07	f : 0.07	c : 0.07	e : 0.07	h : 0.05	a : 0.05	g : 0.05	" : 0.05	# : 0.03	$ : 0.03	! : 0.01	b : 0.01	
= : 0.18	c : 0.12	f : 0.09	" : 0.07	d : 0.07	i : 0.07	e : 0.07	[ : 0.07	h : 0.05	g : 0.05	$ : 0.03	b : 0.03	# : 0.01	! : 0.01	
= : 0.16	c : 0.14	e : 0.11	" : 0.09	[ : 0.09	i : 0.07	f : 0.07	d : 0.07	g : 0.05	h : 0.03	$ : 0.01	! : 0.01	b : 0.01	: : 0.01	
c : 0.16	= : 0.16	e : 0.11	f : 0.09	" : 0.07	i : 0.07	[ : 0.07	a : 0.05	d : 0.05	g : 0.03	h : 0.03	b : 0.03	$ : 0.01	
= : 0.14	c : 0.11	e : 0.11	f : 0.09	d : 0.07	" : 0.07	[ : 0.07	g : 0.05	i : 0.05	b : 0.05	h : 0.03	! : 0.03	a : 0.03	$ : 0.01	# : 0.01	
= : 0.16	[ : 0.14	e : 0.11	f : 0.09	d : 0.07	" : 0.07	! : 0.07	c : 0.07	g : 0.05	# : 0.05	i : 0.03	h : 0.01	b : 0.01	
[ : 0.14	= : 0.11	f : 0.11	" : 0.09	e : 0.09	c : 0.09	d : 0.07	a : 0.07	# : 0.05	g : 0.03	b : 0.03	! : 0.03	i : 0.03	
c : 0.16	= : 0.11	f : 0.11	d : 0.07	e : 0.07	a : 0.07	[ : 0.07	! : 0.07	b : 0.05	" : 0.05	# : 0.05	g : 0.03	i : 0.03	
c : 0.20	[ : 0.11	! : 0.09	f : 0.09	d : 0.09	e : 0.07	= : 0.07	b : 0.05	" : 0.05	g : 0.03	i : 0.03	# : 0.03	$ : 0.01	% : 0.01	
c : 0.18	a : 0.11	d : 0.09	e : 0.07	b : 0.07	f : 0.07	= : 0.07	! : 0.05	" : 0.05	g : 0.05	# : 0.03	i : 0.03	[ : 0.03	$ : 0.01	% : 0.01	
" : 0.20	! : 0.14	c : 0.12	f : 0.09	b : 0.05	[ : 0.05	# : 0.05	g : 0.05	d : 0.05	= : 0.03	i : 0.03	$ : 0.01	% : 0.01	v : 0.01	e : 0.01	
" : 0.18	! : 0.16	f : 0.09	a : 0.09	c : 0.07	e : 0.05	[ : 0.05	# : 0.05	d : 0.05	g : 0.03	i : 0.03	$ : 0.01	% : 0.01	b : 0.01	v : 0.01	= : 0.01	
[ : 0.24	" : 0.14	d : 0.11	c : 0.11	f : 0.05	! : 0.05	# : 0.05	e : 0.03	g : 0.03	i : 0.03	b : 0.03	$ : 0.01	% : 0.01	v : 0.01	= : 0.01	
c : 0.46	d : 0.12	b : 0.11	e : 0.03	f : 0.03	g : 0.03	a : 0.03	[ : 0.03	i : 0.03	% : 0.01	# : 0.01	v : 0.01	= : 0.01	
c : 0.49	d : 0.12	b : 0.11	[ : 0.07	e : 0.03	f : 0.03	g : 0.03	a : 0.01	i : 0.01	v : 0.01	= : 0.01	
c : 0.42	o : 0.14	d : 0.12	a : 0.11	e : 0.03	g : 0.03	b : 0.03	f : 0.01	[ : 0.01	i : 0.01	v : 0.01	
n : 0.46	o : 0.35	d : 0.03	c : 0.03	m : 0.03	a : 0.03	v : 0.01	l : 0.01	
n : 0.46	o : 0.35	l : 0.07	m : 0.07	! : 0.01	v : 0.01	
n : 0.46	o : 0.35	l : 0.07	m : 0.07	! : 0.01	v : 0.01	
n : 0.46	o : 0.35	m : 0.07	l : 0.05	d : 0.01	v : 0.01	c : 0.01	
n : 0.46	o : 0.35	c : 0.07	d : 0.05	m : 0.03	v : 0.01	
c : 0.35	o : 0.20	d : 0.12	a : 0.11	b : 0.07	f : 0.03	g : 0.03	i : 0.01	v : 0.01	e : 0.01	
c : 0.44	d : 0.14	] : 0.11	b : 0.09	f : 0.05	e : 0.03	g : 0.03	a : 0.03	i : 0.01	v : 0.01	
c : 0.42	d : 0.12	2 : 0.07	] : 0.07	b : 0.07	f : 0.05	e : 0.03	g : 0.03	a : 0.03	[ : 0.01	i : 0.01	3 : 0.01	
c : 0.18	2 : 0.18	d : 0.11	] : 0.09	b : 0.07	e : 0.05	f : 0.05	3 : 0.05	4 : 0.03	g : 0.03	a : 0.03	i : 0.03	= : 0.01	> : 0.01	
2 : 0.14	] : 0.11	3 : 0.11	d : 0.09	e : 0.09	c : 0.09	4 : 0.07	f : 0.05	b : 0.05	= : 0.03	g : 0.03	i : 0.03	a : 0.01	! : 0.01	> : 0.01	
c : 0.12	3 : 0.11	e : 0.09	4 : 0.09	d : 0.07	f : 0.07	b : 0.07	] : 0.07	a : 0.07	g : 0.05	2 : 0.03	= : 0.03	i : 0.03	! : 0.01	> : 0.01	
3 : 0.14	c : 0.14	4 : 0.11	d : 0.07	2 : 0.07	e : 0.07	a : 0.07	= : 0.07	g : 0.05	b : 0.03	f : 0.03	i : 0.03	] : 0.01	h : 0.01	> : 0.01	
c : 0.18	4 : 0.12	= : 0.11	2 : 0.09	3 : 0.09	e : 0.09	] : 0.09	d : 0.05	f : 0.05	i : 0.03	g : 0.01	h : 0.01	> : 0.01	
c : 0.14	= : 0.11	] : 0.11	3 : 0.09	4 : 0.09	e : 0.07	i : 0.07	a : 0.07	f : 0.07	b : 0.05	2 : 0.03	g : 0.01	h : 0.01	> : 0.01	
] : 0.14	= : 0.12	c : 0.12	f : 0.09	4 : 0.07	a : 0.07	b : 0.05	e : 0.05	i : 0.05	2 : 0.05	g : 0.03	d : 0.03	3 : 0.01	h : 0.01	> : 0.01	
c : 0.16	= : 0.14	f : 0.12	4 : 0.07	i : 0.07	d : 0.05	2 : 0.05	] : 0.05	e : 0.05	3 : 0.03	g : 0.03	h : 0.03	b : 0.03	a : 0.01	> : 0.01	
= : 0.18	c : 0.14	f : 0.14	i : 0.09	d : 0.07	2 : 0.05	e : 0.05	g : 0.03	h : 0.03	b : 0.03	] : 0.03	a : 0.03	4 : 0.01	3 : 0.01	> : 0.01	
= : 0.18	f : 0.14	c : 0.12	d : 0.09	] : 0.09	i : 0.07	e : 0.07	g : 0.03	3 : 0.03	h : 0.03	2 : 0.03	4 : 0.01	b : 0.01	> : 0.01	
= : 0.16	e : 0.11	] : 0.11	f : 0.11	c : 0.09	i : 0.07	g : 0.05	d : 0.05	b : 0.05	4 : 0.03	h : 0.03	2 : 0.03	3 : 0.03	> : 0.01	
= : 0.16	c : 0.12	e : 0.11	d : 0.11	f : 0.09	i : 0.07	g : 0.05	2 : 0.05	3 : 0.05	b : 0.03	a : 0.03	h : 0.01	4 : 0.01	[ : 0.01	> : 0.01	
= : 0.16	c : 0.11	e : 0.11	d : 0.11	i : 0.07	f : 0.07	3 : 0.07	g : 0.05	] : 0.05	a : 0.03	2 : 0.03	4 : 0.03	h : 0.01	b : 0.01	> : 0.01	
= : 0.18	e : 0.11	d : 0.09	] : 0.09	c : 0.07	2 : 0.07	i : 0.07	g : 0.05	3 : 0.05	f : 0.03	a : 0.03	4 : 0.03	h : 0.01	! : 0.01	b : 0.01	> : 0.01	

#score	788.0874330048406
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_transcript_m1_run2.txt

#BEAR
iiiiiiiiddddqqqqqqqqdddd22iiiii	chrM:14383-14600(-)$1	217	63	94	12.7389
iiiiiiiii[cccccclllccc]ccciiiii	chr5:134262613-134262877(+)$1	264	83	114	8.8857
f!!bb!!eeeeewwwwwwwwwwwwwweeeee	chr11:65267511-65267735(+)$1	224	60	91	10.3624
"dddd"""ddddqqqqqqqqdddd22dddde	chr8:9629646-9629944(+)$1	298	146	177	11.4713
#hhhhhhhh[bbrrrrrrrrrbb]hhhhhhh	chr5:134263320-134263577(+)$1	257	71	102	10.5985
hhhhhhhh!!bbqqqqqqqqbb333hhhhhh	chr11:65195580-65195813(+)$1	233	101	132	13.6982
dd!!cccbb[bbpppppppbb]bb]ccc22d	chr1:569795-570084(-)$1	289	166	197	7.3822
iiiiiiii[cccqqqqqqqqccciiiiiiii	chr11:65192423-65192674(+)$1	251	144	175	13.8016
ccc[dddd!!bbqqqqqqqqbb22dddd]cc	chr5:134260996-134261230(+)$1	234	47	78	13.1186
fffff"""cccrrrrrrrrrccc22ffffff	chrM:494-712(+)$1	218	124	155	12.0413
hh[ccc[a[bb[bboooooobb]bb]a]ccc	chrM:14201-14410(-)$1	209	157	188	9.8005
d[a####bb[bbnnnnnbb]bb333a]dddd	chr19:34874534-34874809(+)$1	275	83	114	7.9256
gggggggbb[cccooooooccc]bb]ggggg	chr19:893460-893688(+)$1	228	179	210	10.3042
"dddd[dddd[aqqqqqqqqa]dddddddd3	chr11:65192503-65192753(+)$1	250	120	151	10.3877
e[dddd[bb[cccooooooccc22bb]dddd	chrM:14247-14494(-)$1	247	125	156	9.8729
==========wwwwwwwwwwwwww=======	chr11:65268462-65268684(+)$1	222	15	46	12.4698
c!!ccc####bboooooobb4444ccc22cc	chr16:88584198-88584456(+)$1	258	116	147	10.4947
eeeee!!eeeeeqqqqqqqqeeeee22eeee	chr3:160232594-160232826(-)$1	232	179	210	10.3767
b[bb[a[bb[aqqqqqqqqa]bb]a]bb]bb	chr5:651376-651740(+)$1	364	52	83	10.6473
fffffccc!!bboooooobb]ccc]ffffff	chr11:65266497-65266721(+)$1	224	10	41	8.8415
hhhhhh"""bbrrrrrrrrrbb333hhhhhh	chr4:174253048-174253320(-)$1	272	70	101	12.7619
fff"""ccc[bbqqqqqqqqbb]ccc22fff	chr19:34882786-34883090(+)$1	304	186	217	12.5797
d[ffffff[a!!bboooooobb22a]fffff	chr19:34883338-34883586(+)$1	248	196	227	9.0721
ggccc[eeeeerrrrrrrrreeeeeccc]gg	chr19:34882315-34882570(+)$1	255	59	90	10.3811
e[dddd"""cccqqqqqqqqccc333dddd]	chr3:197901245-197901508(+)$1	263	108	139	13.9832
hh[ccc[a[bb[bboooooobb]bb]a]ccc	chrM:14210-14418(-)$1	208	165	196	9.8005
fffff"""ddddqqqqqqqqdddd4444fff	chr12:53434480-53434723(+)$1	243	40	71	11.6526
f!!gggggggbbqqqqqqqqbb22ggggggg	chr11:62609005-62609323(-)$1	318	19	50	14.0896
e[dddd[bb[cccooooooccc22bb]dddd	chrM:14226-14447(-)$1	221	78	109	9.8729
e!!dddd[cccxxxxxxxxxxxxxxxccc33	chr8:9629517-9629782(+)$1	265	144	175	10.4526
cc[dddd!!cccqqqqqqqqccc22dddd33	chrM:14218-14424(-)$1	206	155	186	12.9865
hhhhhhhh!!bbqqqqqqqqbb333hhhhhh	chr11:65195640-65195898(+)$1	258	41	72	13.6982
!bbffffff[bbrrrrrrrrrbb]ffffff4	chr19:34882065-34882327(+)$1	262	13	44	10.0460
fffff"""cccrrrrrrrrrccc22ffffff	chrM:512-738(+)$1	226	106	137	12.0413
iiiiiiiiddddqqqqqqqqdddd22iiiii	chrM:14366-14583(-)$1	217	46	77	12.7389

#otherMatches

#Seq PSSM
UGGGGGAGGUUAUAUGGGUUUAAUAGUUUUU	chrM:14383-14600(-)$1	217	63	94	12.7389
GAAUUAUGAUGCGACUGUGGGUACGUUCGUA	chr5:134262613-134262877(+)$1	264	83	114	8.8857
GAACCAAUUUAGAAGAAUACUUGAAGCUAGA	chr11:65267511-65267735(+)$1	224	60	91	10.3624
auuggagaaaggggacaaugccuugaccaga	chr8:9629646-9629944(+)$1	298	146	177	11.4713
GCUGUGAAUGUCAUAAUUAAGGAGAUUUGUA	chr5:134263320-134263577(+)$1	257	71	102	10.5985
UCUUGUGCAAAUUAAAAGUUAUGGGGCAUAA	chr11:65195580-65195813(+)$1	233	101	132	13.6982
AUAUGGUUAGUGUGUUGGUUAGUAGGCCUAG	chr1:569795-570084(-)$1	289	166	197	7.3822
AUACUAAUUAAUAAUAGUAAGUUGUUAGUGU	chr11:65192423-65192674(+)$1	251	144	175	13.8016
GUAAGAGGUAUGGUUUUGAGUAGUCCUCCUA	chr5:134260996-134261230(+)$1	234	47	78	13.1186
GUUUAGACGGGCUCACAUCACCCCAUAAACA	chrM:494-712(+)$1	218	124	155	12.0413
GUGCGGGGGCUUUGUAUGAUUAUGGGCGUUG	chrM:14201-14410(-)$1	209	157	188	9.8005
GGUGAGGCAGGCAGGUGGCAUGAGGAGCUGU	chr19:34874534-34874809(+)$1	275	83	114	7.9256
caggcuggaaugcaauggcgcgaucuuagcu	chr19:893460-893688(+)$1	228	179	210	10.3042
GAAGUUGCUUAGAAACUUUCCAAAGUGCUUA	chr11:65192503-65192753(+)$1	250	120	151	10.3877
GGUGCUGUGGGUGAAAGAGUAUGAUGGGGUG	chrM:14247-14494(-)$1	247	125	156	9.8729
GGUUUUUUUUUUUUACACGAAUUUGAGGAAA	chr11:65268462-65268684(+)$1	222	15	46	12.4698
ggauggauaaaugagugggugaggccaggcg	chr16:88584198-88584456(+)$1	258	116	147	10.4947
CUUAUUAGUUAUCUAUGAUUAUAACGCGUAA	chr3:160232594-160232826(-)$1	232	179	210	10.3767
CUGUGAGGCGUGGACUGUGAGGUGUGACUGU	chr5:651376-651740(+)$1	364	52	83	10.6473
UGUGCGGUAGGCAUUGAGGCAGCCAGCGCAG	chr11:65266497-65266721(+)$1	224	10	41	8.8415
aggaugaagaugaagaaUAAAUGGCUAUCCU	chr4:174253048-174253320(-)$1	272	70	101	12.7619
UCUGGGUCUGUUAAUGUCUGAGGAGGUAGGA	chr19:34882786-34883090(+)$1	304	186	217	12.5797
AAUGUCUGAGGAGGUAGGAUCUGGCACAGGC	chr19:34883338-34883586(+)$1	248	196	227	9.0721
AUGUGUCUUCCAGUGACUUAGGAGGUACGAU	chr19:34882315-34882570(+)$1	255	59	90	10.3811
gguuaggguuaggguuaggauuaggguuagg	chr3:197901245-197901508(+)$1	263	108	139	13.9832
GUGCGGGGGCUUUGUAUGAUUAUGGGCGUUG	chrM:14210-14418(-)$1	208	165	196	9.8005
CCCCUCCUCUUAUUUAAUUCUGAGUUUUGGG	chr12:53434480-53434723(+)$1	243	40	71	11.6526
GCCGAGGCGACCGAAGUAAAGGUaucgcuuc	chr11:62609005-62609323(-)$1	318	19	50	14.0896
GGUGCUGUGGGUGAAAGAGUAUGAUGGGGUG	chrM:14226-14447(-)$1	221	78	109	9.8729
uuauuagaccaggcaagaauuauuaauggau	chr8:9629517-9629782(+)$1	265	144	175	10.4526
CGGGAGGAUCCUAUUGGUGCGGGGGCUUUGU	chrM:14218-14424(-)$1	206	155	186	12.9865
UCUUGUGCAAAUUAAAAGUUAUGGGGCAUAA	chr11:65195640-65195898(+)$1	258	41	72	13.6982
UCUUCUAGUGUCUGGGGAAGUGAGGCUGGGU	chr19:34882065-34882327(+)$1	262	13	44	10.0460
GUUUAGACGGGCUCACAUCACCCCAUAAACA	chrM:512-738(+)$1	226	106	137	12.0413
UGGGGGAGGUUAUAUGGGUUUAAUAGUUUUU	chrM:14366-14583(-)$1	217	46	77	12.7389

#DB
((((((((((((........))))..)))))	chrM:14383-14600(-)$1	1	63	94	12.7389
(((((((((.((((((...))).))))))))	chr5:134262613-134262877(+)$1	1	83	114	8.8857
(..((..(((((..............)))))	chr11:65267511-65267735(+)$1	1	60	91	10.3624
.((((...((((........))))..)))))	chr8:9629646-9629944(+)$1	1	146	177	11.4713
.((((((((.((.........)).)))))))	chr5:134263320-134263577(+)$1	1	71	102	10.5985
((((((((..((........))...))))))	chr11:65195580-65195813(+)$1	1	101	132	13.6982
((..(((((.((.......)).)).)))..)	chr1:569795-570084(-)$1	1	166	197	7.3822
((((((((.(((........)))))))))))	chr11:65192423-65192674(+)$1	1	144	175	13.8016
(((.((((..((........))..)))).))	chr5:134260996-134261230(+)$1	1	47	78	13.1186
(((((...(((.........)))..))))))	chrM:494-712(+)$1	1	124	155	12.0413
((.(((.(.((.((......)).)).).)))	chrM:14201-14410(-)$1	1	157	188	9.8005
(.(....((.((.....)).))...).))))	chr19:34874534-34874809(+)$1	1	83	114	7.9256
(((((((((.(((......))).)).)))))	chr19:893460-893688(+)$1	1	179	210	10.3042
.((((.((((.(........).)))))))).	chr11:65192503-65192753(+)$1	1	120	151	10.3877
(.((((.((.(((......)))..)).))))	chrM:14247-14494(-)$1	1	125	156	9.8729
((((((((((..............)))))))	chr11:65268462-65268684(+)$1	1	15	46	12.4698
(..(((....((......))....)))..))	chr16:88584198-88584456(+)$1	1	116	147	10.4947
(((((..(((((........)))))..))))	chr3:160232594-160232826(-)$1	1	179	210	10.3767
(.((.(.((.(........).)).).)).))	chr5:651376-651740(+)$1	1	52	83	10.6473
((((((((..((......)).))).))))))	chr11:65266497-65266721(+)$1	1	10	41	8.8415
((((((...((.........))...))))))	chr4:174253048-174253320(-)$1	1	70	101	12.7619
(((...(((.((........)).)))..)))	chr19:34882786-34883090(+)$1	1	186	217	12.5797
(.((((((.(..((......))..).)))))	chr19:34883338-34883586(+)$1	1	196	227	9.0721
(((((.(((((.........)))))))).))	chr19:34882315-34882570(+)$1	1	59	90	10.3811
(.((((...(((........)))...)))).	chr3:197901245-197901508(+)$1	1	108	139	13.9832
((.(((.(.((.((......)).)).).)))	chrM:14210-14418(-)$1	1	165	196	9.8005
(((((...((((........))))....)))	chr12:53434480-53434723(+)$1	1	40	71	11.6526
(..(((((((((........))..)))))))	chr11:62609005-62609323(-)$1	1	19	50	14.0896
(.((((.((.(((......)))..)).))))	chrM:14226-14447(-)$1	1	78	109	9.8729
(..((((.(((...............)))..	chr8:9629517-9629782(+)$1	1	144	175	10.4526
((.((((..(((........)))..))))..	chrM:14218-14424(-)$1	1	155	186	12.9865
((((((((..((........))...))))))	chr11:65195640-65195898(+)$1	1	41	72	13.6982
.((((((((.((.........)).)))))).	chr19:34882065-34882327(+)$1	1	13	44	10.0460
(((((...(((.........)))..))))))	chrM:512-738(+)$1	1	106	137	12.0413
((((((((((((........))))..)))))	chrM:14366-14583(-)$1	1	46	77	12.7389

#PSSM
f : 0.20	h : 0.14	e : 0.14	i : 0.11	d : 0.08	c : 0.08	" : 0.05	g : 0.05	# : 0.02	= : 0.02	b : 0.02	! : 0.02	
h : 0.17	[ : 0.17	f : 0.14	i : 0.11	! : 0.11	d : 0.08	c : 0.05	g : 0.05	= : 0.02	e : 0.02	b : 0.02	
f : 0.17	! : 0.14	d : 0.14	i : 0.11	h : 0.11	[ : 0.08	c : 0.05	b : 0.05	a : 0.02	g : 0.02	= : 0.02	e : 0.02	
d : 0.20	f : 0.17	i : 0.11	h : 0.11	c : 0.11	b : 0.05	g : 0.05	! : 0.02	[ : 0.02	# : 0.02	= : 0.02	e : 0.02	" : 0.02	
d : 0.22	f : 0.17	c : 0.14	i : 0.11	h : 0.11	g : 0.05	b : 0.02	# : 0.02	= : 0.02	e : 0.02	[ : 0.02	" : 0.02	
d : 0.17	" : 0.14	c : 0.14	i : 0.11	h : 0.11	! : 0.05	g : 0.05	[ : 0.05	f : 0.05	# : 0.02	= : 0.02	a : 0.02	
" : 0.17	[ : 0.14	i : 0.11	d : 0.11	h : 0.08	c : 0.08	! : 0.05	# : 0.05	g : 0.05	f : 0.05	= : 0.02	e : 0.02	
" : 0.17	b : 0.17	i : 0.11	e : 0.08	h : 0.08	d : 0.05	a : 0.05	c : 0.05	f : 0.05	= : 0.02	# : 0.02	g : 0.02	[ : 0.02	! : 0.02	
b : 0.17	d : 0.14	! : 0.14	[ : 0.11	c : 0.11	e : 0.08	" : 0.05	i : 0.02	h : 0.02	= : 0.02	# : 0.02	g : 0.02	f : 0.02	
[ : 0.28	c : 0.17	d : 0.14	! : 0.11	e : 0.08	b : 0.08	= : 0.02	# : 0.02	a : 0.02	g : 0.02	
b : 0.40	c : 0.28	d : 0.11	e : 0.08	[ : 0.02	w : 0.02	a : 0.02	! : 0.02	
b : 0.31	c : 0.20	d : 0.11	r : 0.11	e : 0.05	[ : 0.05	a : 0.02	w : 0.02	q : 0.02	! : 0.02	x : 0.02	
q : 0.42	r : 0.17	c : 0.11	b : 0.08	w : 0.05	o : 0.05	p : 0.02	n : 0.02	x : 0.02	
q : 0.42	r : 0.17	o : 0.14	b : 0.08	w : 0.05	c : 0.02	p : 0.02	n : 0.02	x : 0.02	
q : 0.42	o : 0.22	r : 0.17	w : 0.05	c : 0.02	p : 0.02	n : 0.02	x : 0.02	
q : 0.42	o : 0.22	r : 0.17	w : 0.05	c : 0.02	p : 0.02	n : 0.02	x : 0.02	
q : 0.42	o : 0.22	r : 0.17	w : 0.05	l : 0.02	p : 0.02	n : 0.02	x : 0.02	
q : 0.42	o : 0.22	r : 0.17	w : 0.05	l : 0.02	p : 0.02	b : 0.02	x : 0.02	
q : 0.42	r : 0.17	o : 0.17	b : 0.08	w : 0.05	l : 0.02	p : 0.02	x : 0.02	
q : 0.40	r : 0.17	c : 0.11	b : 0.08	o : 0.08	w : 0.05	] : 0.02	a : 0.02	x : 0.02	
b : 0.31	c : 0.25	d : 0.11	w : 0.05	r : 0.05	e : 0.05	] : 0.05	a : 0.02	4 : 0.02	x : 0.02	
b : 0.37	c : 0.28	d : 0.11	w : 0.05	] : 0.05	e : 0.05	4 : 0.02	x : 0.02	
c : 0.17	d : 0.14	] : 0.14	2 : 0.14	b : 0.11	3 : 0.11	w : 0.05	e : 0.05	4 : 0.02	x : 0.02	
2 : 0.22	d : 0.14	3 : 0.14	b : 0.11	c : 0.08	] : 0.08	w : 0.05	e : 0.05	i : 0.02	4 : 0.02	x : 0.02	
2 : 0.17	3 : 0.14	b : 0.14	c : 0.08	] : 0.05	d : 0.05	e : 0.05	a : 0.05	w : 0.02	h : 0.02	i : 0.02	= : 0.02	4 : 0.02	g : 0.02	x : 0.02	f : 0.02	
c : 0.14	] : 0.14	2 : 0.11	h : 0.11	f : 0.11	d : 0.08	b : 0.05	w : 0.02	i : 0.02	a : 0.02	= : 0.02	3 : 0.02	4 : 0.02	g : 0.02	x : 0.02	
d : 0.14	f : 0.14	i : 0.11	h : 0.11	c : 0.11	] : 0.08	a : 0.05	g : 0.05	2 : 0.05	e : 0.02	= : 0.02	b : 0.02	4 : 0.02	
d : 0.22	f : 0.14	i : 0.11	h : 0.11	c : 0.08	e : 0.05	] : 0.05	g : 0.05	2 : 0.05	= : 0.02	b : 0.02	4 : 0.02	
d : 0.20	f : 0.20	i : 0.11	h : 0.11	] : 0.08	c : 0.08	e : 0.05	2 : 0.05	g : 0.05	= : 0.02	
f : 0.20	d : 0.17	i : 0.11	h : 0.11	c : 0.11	g : 0.08	e : 0.05	3 : 0.05	2 : 0.02	= : 0.02	b : 0.02	
f : 0.17	i : 0.11	h : 0.11	d : 0.11	c : 0.11	e : 0.08	g : 0.08	3 : 0.08	= : 0.02	b : 0.02	] : 0.02	4 : 0.02	

#score	391.3785780315857
#seq	35
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF545FMX_NPM1_transcript_m2_run2.txt

#BEAR
[bb!!ccc!!bbpppppppbb4444ccc22bb]a]	chr11:618786-618990(-)$1	204	48	83	10.1777
ffffiiiiiiiiiooooooiiiiiiiii333ffff	chr9:100777544-100777870(+)$1	326	21	56	12.3769
eeeeiiiiiiiiinnnnniiiiiiiiiggggggg"	chr11:65192486-65192724(+)$1	238	83	118	10.3587
eeeee[ggggggglllggggggg]eeeee22a]ee	chr20:17943302-17943521(-)$1	219	41	76	11.1026
ff[ccc[bbcccooooooccc4444bbccc]ffff	chr19:8538961-8539228(+)$1	267	54	89	11.3230
[bb!!ccc!!bbpppppppbb4444ccc22bb]a]	chr11:618790-619008(-)$1	218	159	194	10.1777
fff"""ccc[ffffffooooooffffff333ccc2	chr17:18965256-18965544(+)$1	288	51	86	11.3488
[eeeee####cccnnnnnccc4444eeeee]a]bb	chr10:64573518-64573735(-)$1	217	37	72	12.1578
[bb[ffffffooooooffffff]bbccc333dddd	chr2:232322875-232323091(-)$1	216	126	161	9.8758
eee####ffffffrrrrrrrrrffffff333eeee	chr10:128256268-128256471(-)$1	203	51	86	14.0583
eee"""ddddcccnnnnnccc333dddd333eeee	chr13:92003091-92003315(+)$1	224	185	220	14.7292
dd"""ffffff[cccmmmmcccffffff333dddd	chr7:103029306-103029509(-)$1	203	103	138	11.6622
dd"""ffffff[cccmmmmcccffffff333dddd	chr7:103029314-103029525(-)$1	211	119	154	11.6622
ddd"""ffffffbbmmmmbb]ffffff333dddd4	chr15:72395035-72395288(-)$1	253	28	63	10.9458
ggggg$$$$$cccmmmmccc4444ggggggg]===	chr9:139565004-139565226(+)$1	222	77	112	10.4763
fff####ffffffrrrrrrrrrffffffffffff2	chr2:232319740-232319976(-)$1	236	124	159	11.0714
eeee!!ccc!!cccmmmmccc22ccc22eeeeeff	chr2:232325089-232325328(-)$1	239	193	228	10.2467
gggg$$$$$cccooooooccc0000000000gggg	chr1:205688578-205688877(-)$1	299	125	160	9.1928
eee"""bb!!cccnnnnnccc22bb22eeeee333	chr2:232325435-232325678(-)$1	243	93	128	11.8843
[ccc"""fffffflllffffff333ccc22ccc]b	chr20:17943256-17943502(-)$1	246	192	227	12.8350
eeeee[ggggggglllggggggg]eeeee22a]ee	chr20:17943321-17943552(-)$1	231	72	107	11.1026
dddd!!a[ddddnnnnndddda22dddd22adddd	chr12:98993365-98993614(+)$1	249	95	130	9.7044

#otherMatches

#Seq PSSM
AGCACAGACCCCAAAGCCAGGAACCUCUCAGCCGA	chr11:618786-618990(-)$1	204	48	83	10.1777
UGUUGUUGUUGCCUCCAUUGGCAAUAAUCUAAGCA	chr9:100777544-100777870(+)$1	326	21	56	12.3769
ACUAAUUAAUAAUAGUAAGUUGUUAGUGUUGGUUA	chr11:65192486-65192724(+)$1	238	83	118	10.3587
GCAGUCUGCAGUGUUCUACUGUGAACUGCUUGUGU	chr20:17943302-17943521(-)$1	219	41	76	11.1026
GUUGGAUGAUGCUGAAAUGUGAACCUCUCUUGCAG	chr19:8538961-8539228(+)$1	267	54	89	11.3230
AGCACAGACCCCAGAGCCAGGAACCUCUCAGCCGA	chr11:618790-619008(-)$1	218	159	194	10.1777
aagagagguagcguuuucuccugagcgugaagccg	chr17:18965256-18965544(+)$1	288	51	86	11.3488
UGCCAGAGAGACCUACAUGGUACAGCUGGCCCAGA	chr10:64573518-64573735(-)$1	217	37	72	12.1578
CUAUUGAAAUGUAAGGGUUUUAUUAACAUUAAUGC	chr2:232322875-232323091(-)$1	216	126	161	9.8758
GUGCCACUCGAGGCUUCUUCUCCCUUGGAAACACU	chr10:128256268-128256471(-)$1	203	51	86	14.0583
UCGAUGUAGAAUCUGCCUGGUCUAUCUGAUGUGAC	chr13:92003091-92003315(+)$1	224	185	220	14.7292
AUGUUGACUUUAGGUGUAGACCAAAGUUUAAGUUG	chr7:103029306-103029509(-)$1	203	103	138	11.6622
AUGUUGACUUUAGGUGUAGACCAAAGUUUAAGUUG	chr7:103029314-103029525(-)$1	211	119	154	11.6622
uaauuaugucauaugcaaauaaugacaauuuuguc	chr15:72395035-72395288(-)$1	253	28	63	10.9458
GUACGCGCUGUGACACUUCAAACUCGUACCGUGAG	chr9:139565004-139565226(+)$1	222	77	112	10.4763
GUUUUUACUGUUACCUGAUCAAUGACAGAGCCUUC	chr2:232319740-232319976(-)$1	236	124	159	11.0714
AACAAAGGGACUUAAUACUGAAACCUGAUGUUACA	chr2:232325089-232325328(-)$1	239	193	228	10.2467
CUAUGGCAGUUCGAAAAAGAAAAACAAAAAGAUGG	chr1:205688578-205688877(-)$1	299	125	160	9.1928
UCUUUCAGACUCUGAAGAAGAAGCUAUGGAGACUA	chr2:232325435-232325678(-)$1	243	93	128	11.8843
AGCUUUAAUAGCUAUUAGCUAUGUUAGUAGACUGA	chr20:17943256-17943502(-)$1	246	192	227	12.8350
GCAGUCUGCAGUGUUCUACUGUGAACUGCUUGUGU	chr20:17943321-17943552(-)$1	231	72	107	11.1026
CCACUUGUAAACUUCUUGUUUCUUGUGGUUCCAGU	chr12:98993365-98993614(+)$1	249	95	130	9.7044

#DB
.((..(((..((.......))....)))..)).).	chr11:618786-618990(-)$1	1	48	83	10.1777
(((((((((((((......)))))))))...))))	chr9:100777544-100777870(+)$1	1	21	56	12.3769
))))(((((((((.....)))))))))(((((((.	chr11:65192486-65192724(+)$1	1	83	118	10.3587
(((((.(((((((...))))))).)))))..).))	chr20:17943302-17943521(-)$1	1	41	76	11.1026
((.(((.(((((......)))....))))).))))	chr19:8538961-8539228(+)$1	1	54	89	11.3230
.((..(((..((.......))....)))..)).).	chr11:618790-619008(-)$1	1	159	194	10.1777
(((...(((.((((((......))))))...))).	chr17:18965256-18965544(+)$1	1	51	86	11.3488
.(((((....(((.....)))....))))).).))	chr10:64573518-64573735(-)$1	1	37	72	12.1578
.((.((((((......)))))).)))))...))))	chr2:232322875-232323091(-)$1	1	126	161	9.8758
(((....((((((.........))))))...))))	chr10:128256268-128256471(-)$1	1	51	86	14.0583
(((...(((((((.....)))...))))...))))	chr13:92003091-92003315(+)$1	1	185	220	14.7292
((...((((((.(((....)))))))))...))))	chr7:103029306-103029509(-)$1	1	103	138	11.6622
((...((((((.(((....)))))))))...))))	chr7:103029314-103029525(-)$1	1	119	154	11.6622
(((...((((((((....)).))))))...)))).	chr15:72395035-72395288(-)$1	1	28	63	10.9458
(((((.....(((....)))....))))))).)))	chr9:139565004-139565226(+)$1	1	77	112	10.4763
(((....((((((.........)))))))))))).	chr2:232319740-232319976(-)$1	1	124	159	11.0714
((((..(((..(((....)))..)))..)))))))	chr2:232325089-232325328(-)$1	1	193	228	10.2467
((((.....(((......)))..........))))	chr1:205688578-205688877(-)$1	1	125	160	9.1928
(((...((..(((.....)))..))..)))))...	chr2:232325435-232325678(-)$1	1	93	128	11.8843
.(((...((((((...))))))...)))..))).)	chr20:17943256-17943502(-)$1	1	192	227	12.8350
(((((.(((((((...))))))).)))))..).))	chr20:17943321-17943552(-)$1	1	72	107	11.1026
((((..(.((((.....)))))..))))..)))))	chr12:98993365-98993614(+)$1	1	95	130	9.7044

#PSSM
e : 0.31	[ : 0.22	f : 0.18	d : 0.18	g : 0.09	
e : 0.36	f : 0.18	d : 0.18	b : 0.13	g : 0.09	c : 0.04	
e : 0.36	b : 0.13	f : 0.13	" : 0.09	d : 0.09	g : 0.09	[ : 0.04	c : 0.04	
" : 0.27	e : 0.22	! : 0.09	c : 0.09	# : 0.09	g : 0.09	f : 0.04	[ : 0.04	d : 0.04	
" : 0.31	! : 0.18	e : 0.13	i : 0.09	# : 0.09	c : 0.04	f : 0.04	g : 0.04	$ : 0.04	
" : 0.22	c : 0.13	f : 0.13	i : 0.09	[ : 0.09	# : 0.09	$ : 0.09	! : 0.09	e : 0.04	
c : 0.18	f : 0.18	# : 0.13	i : 0.09	g : 0.09	$ : 0.09	[ : 0.04	d : 0.04	b : 0.04	" : 0.04	a : 0.04	
f : 0.31	c : 0.18	i : 0.09	g : 0.09	b : 0.09	$ : 0.09	# : 0.04	d : 0.04	[ : 0.04	
f : 0.31	! : 0.13	i : 0.09	g : 0.09	c : 0.09	d : 0.09	$ : 0.09	b : 0.04	# : 0.04	
f : 0.31	! : 0.18	i : 0.09	g : 0.09	c : 0.09	d : 0.09	[ : 0.04	# : 0.04	$ : 0.04	
f : 0.31	c : 0.27	b : 0.09	i : 0.09	g : 0.09	o : 0.04	! : 0.04	d : 0.04	
c : 0.31	f : 0.22	b : 0.09	i : 0.09	g : 0.09	[ : 0.09	o : 0.04	d : 0.04	
c : 0.31	f : 0.18	o : 0.13	p : 0.09	i : 0.09	g : 0.09	b : 0.04	n : 0.04	
n : 0.22	o : 0.18	l : 0.13	c : 0.13	p : 0.09	r : 0.09	f : 0.04	b : 0.04	m : 0.04	
n : 0.22	o : 0.18	l : 0.13	m : 0.13	p : 0.09	r : 0.09	c : 0.09	f : 0.04	
n : 0.22	m : 0.22	o : 0.18	l : 0.13	p : 0.09	r : 0.09	f : 0.04	
n : 0.22	m : 0.22	o : 0.18	p : 0.09	g : 0.09	f : 0.09	r : 0.09	
o : 0.18	n : 0.18	m : 0.18	p : 0.09	g : 0.09	f : 0.09	r : 0.09	c : 0.04	d : 0.04	
c : 0.31	p : 0.09	o : 0.09	g : 0.09	f : 0.09	r : 0.09	m : 0.09	i : 0.04	b : 0.04	d : 0.04	
c : 0.40	b : 0.13	i : 0.09	g : 0.09	f : 0.09	r : 0.09	o : 0.04	d : 0.04	
c : 0.36	b : 0.09	i : 0.09	g : 0.09	f : 0.09	r : 0.09	o : 0.04	] : 0.04	4 : 0.04	d : 0.04	
4 : 0.22	f : 0.13	i : 0.09	g : 0.09	r : 0.09	c : 0.09	2 : 0.09	o : 0.04	3 : 0.04	0 : 0.04	a : 0.04	
f : 0.27	4 : 0.22	2 : 0.13	i : 0.09	g : 0.09	3 : 0.09	] : 0.04	0 : 0.04	
f : 0.27	4 : 0.22	i : 0.09	] : 0.09	b : 0.09	3 : 0.09	c : 0.04	0 : 0.04	2 : 0.04	
f : 0.27	4 : 0.18	i : 0.09	e : 0.09	b : 0.09	d : 0.09	g : 0.04	c : 0.04	0 : 0.04	3 : 0.04	
f : 0.27	c : 0.22	e : 0.13	i : 0.09	d : 0.09	b : 0.04	g : 0.04	0 : 0.04	2 : 0.04	
f : 0.27	c : 0.18	e : 0.13	i : 0.09	d : 0.09	2 : 0.09	b : 0.04	g : 0.04	0 : 0.04	
c : 0.22	f : 0.22	e : 0.18	g : 0.09	d : 0.09	i : 0.04	3 : 0.04	2 : 0.04	0 : 0.04	
3 : 0.36	e : 0.22	2 : 0.18	g : 0.09	c : 0.04	f : 0.04	0 : 0.04	
3 : 0.36	2 : 0.27	e : 0.13	g : 0.09	c : 0.04	f : 0.04	0 : 0.04	
3 : 0.31	b : 0.09	g : 0.09	2 : 0.09	] : 0.09	e : 0.09	d : 0.04	f : 0.04	0 : 0.04	c : 0.04	a : 0.04	
d : 0.22	e : 0.18	f : 0.13	a : 0.13	b : 0.09	g : 0.09	c : 0.09	] : 0.04	
] : 0.22	d : 0.22	f : 0.13	e : 0.13	g : 0.09	c : 0.09	= : 0.04	3 : 0.04	
d : 0.22	f : 0.18	e : 0.18	a : 0.09	g : 0.09	c : 0.04	b : 0.04	= : 0.04	3 : 0.04	] : 0.04	
e : 0.18	d : 0.18	f : 0.13	] : 0.09	2 : 0.09	b : 0.09	" : 0.04	4 : 0.04	= : 0.04	g : 0.04	3 : 0.04	

#score	248.4712319243046
#seq	22
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_CDS_m2_run2.txt

#BEAR
c[a!!fffffflllffffff22accc]ddd	chr19:6744417-6744671(+)$1	254	176	206	8.7670
e!!gggggggmmmmggggggg]eeeee:BB	chrX:53585887-53586160(-)$1	273	189	219	8.8255
ddd[ffffffmmmmffffff]dddd4444h	chr5:179300144-179300397(-)$1	253	32	62	10.5942
ccc[ccccccmmmmccc]ccc]ccc]ffff	chr16:67320750-67321011(+)$1	261	135	165	12.4083
bcccffffffmmmmffffff]ccc]bba]c	chr15:91493208-91493522(+)$1	314	157	187	10.1215
[bb[bb[cccmmmmccc333bb]bb333dd	chr15:22927974-22928260(+)$1	286	211	241	11.4313
dddd[a[cccmmmmccc]a]dddd4444ee	chr11:71949161-71949410(+)$1	249	137	167	11.7328
ee"""eeeeemmmmeeeee333eeeeeGGG	chr16:31199558-31199802(+)$1	244	108	138	8.7051
ff!!ffffffmmmmffffff4444ffffff	chr15:75652449-75652691(-)$1	242	42	72	11.1117
$$$$$cccbbmmmmbb]ccc22dddd]eee	chr22:19955899-19956162(+)$1	263	108	138	9.5282
ddbb[ccc[ammmma]ccc]bb]dddd22b	chr19:7711895-7712172(+)$1	277	143	173	9.6131
fff"""ddddmmmmddddffffff22ccc]	chr2:20240640-20240917(-)$1	277	150	180	9.6902
bb[gggggggmmmmggggggg]bb]fffff	chrX:53617908-53618219(-)$1	311	132	162	10.3503
ffffff[cccmmmmccc]ffffff]bb]cc	chr11:67200270-67200529(+)$1	259	110	140	11.1566
ffff!!ddddmmmmddddffffff]dddd:	chr2:61725795-61726072(-)$1	277	114	144	8.8025
[a!!ffffffmmmmffffff22a]dddd77	chr19:42402468-42402750(+)$1	282	72	102	10.5976
ggg[bb[cccmmmmccc]bb]ggggggg22	chr11:118962683-118963000(+)$1	317	206	236	12.1752
fff[bb[cccmmmmccc22bb]ffffff]c	chr1:150300622-150300892(+)$1	270	158	188	11.2210
!dddd!!cccmmmmcccdddd]ddddccc]	chr1:23765197-23765487(-)$1	290	120	150	11.6611
!a!!ffffffmmmmffffff22a333bb]d	chr1:227171650-227171919(+)$1	269	149	179	11.3555
""a[bb[cccmmmmcccbb]a22ffffff:	chr19:5039740-5039981(+)$1	241	136	166	11.1171
!iiiiiiiiimmmmiiiiiiiii22a]eee	chr20:62591364-62591639(-)$1	275	52	82	11.2071
ffffff[cccmmmmccc]ffffff22ccc9	chr16:29813938-29814221(+)$1	283	227	257	10.9475
ggggbb[cccmmmmccc]bb22gggggggB	chr16:23494198-23494473(-)$1	275	225	255	11.4015
g!!ccc[cccmmmmcccccc4444gggggg	chr12:53836322-53836653(+)$1	331	172	202	13.3214
""ddddddddmmmmdddd]dddd22fffff	chr17:80043153-80043426(-)$1	273	45	75	9.2054
ggg!!eeeeemmmmeeeeegggggggFFFF	chr6:134494367-134494640(-)$1	273	40	70	8.8247
ddd[ccccccmmmmccc]ccc]dddd333h	chr19:39879402-39879649(-)$1	247	82	112	12.2631
gggccc[cccmmmmcccccc]ggggggg::	chr6:79725370-79725653(-)$1	283	68	98	11.1364
###gggggggmmmmggggggg4444dddd]	chr19:42395945-42396209(+)$1	264	12	42	11.8456
f[bb"""cccmmmmccc22bb]ffffff22	chr4:76583973-76584260(-)$1	287	81	111	10.7129
iiibb!!cccnnnnncccbb]iiiiiiiii	chr11:65653011-65653307(-)$1	296	196	226	8.2949
####bb[cccmmmmccc]bb4444ddddcc	chr4:1985309-1985570(-)$1	261	104	134	12.7015
b[dddd[ccclllcccdddd]bbeeeee]c	chr7:99049816-99050100(+)$1	284	37	67	8.4114
c!!ccc[ddddlllddddccc22cccccc2	chr1:52551667-52551992(+)$1	325	171	201	8.7804
[ccc"""cccmmmmccc22ccc22dddd22	chr10:43694529-43694794(-)$1	265	29	59	11.7294
!!dddd[cccmmmmccc]dddd]ccc]eee	chr18:21056988-21057264(+)$1	276	159	189	11.8536
f!!ddddcccmmmmccc333dddd4444ff	chr19:34925633-34925889(+)$1	256	5	35	11.6540
b[a[bb[ccclllcccbb]a]bb]ccceee	chr1:185270064-185270315(-)$1	251	157	187	8.9432
dddgggggggmmmmggggggg>>>>>>>>>	chr10:62539749-62540043(+)$1	294	41	71	9.8437
[bb!!eeeeemmmmeeeee]bb]ccc333f	chr14:105615090-105615327(-)$1	237	180	210	9.8784
ddddd!!cccmmmmccc22dddd]dddd:c	chr16:89720188-89720482(-)$1	294	56	86	10.3334
cc[gggggggmmmmggggggg22ccc]fff	chr12:132198469-132198722(+)$1	253	57	87	11.4100
ddd[ffffffmmmmffffff]dddd]ccc3	chr1:150940872-150941135(-)$1	263	68	98	10.7664
=========oooooo==========]cccC	chr6:75968540-75968872(-)$1	332	184	214	8.9665
iiiiiii[bbmmmmbb]iiiiiiiiidddd	chr19:15378243-15378519(-)$1	276	43	73	10.1447
cc!!ccc[bbmmmmbbccc4444ccc22hh	chr17:27448115-27448388(-)$1	273	156	186	10.3329
==========oooooo===========FFF	chr8:41556921-41557211(-)$1	290	250	280	8.8873
=====!!cccmmmmccc==========:::	chr22:50354815-50355090(+)$1	275	6	36	11.1212
gggcccddddllldddd]ccc333gggggg	chr16:67271926-67272176(-)$1	250	199	229	8.9990
abb[dddd[ammmma]dddd]bb]a]dddd	chr16:31196148-31196402(+)$1	254	131	161	9.2640
!!a[ffffffmmmmffffff]a22ddddgg	chr1:16265060-16265350(+)$1	290	152	182	11.4331
!dddd!!cccnnnnnccc333dddd4444b	chr17:30689829-30690108(+)$1	279	62	92	8.8420
[dddd!!cccmmmmcccdddd4444ggggg	chr11:46678492-46678802(+)$1	310	87	117	12.1566
!ffffff!!ammmma22ffffffddddeee	chr11:9446541-9446824(+)$1	283	155	185	9.2569
[dddd[ddddmmmmdddd]dddd]dddd]c	chr19:8386389-8386670(+)$1	281	201	231	9.8030

#otherMatches

#Seq PSSM
CACCCGCCUGGGUGCCGGGUAUGGGCUCCU	chr19:6744417-6744671(+)$1	254	176	206	8.7670
AAAGUUCUCGAUGCUGAGAGCAUGCAUGAC	chrX:53585887-53586160(-)$1	273	189	219	8.8255
GCACACUCCUUAUUAGGAGUCUGCAUAAAG	chr5:179300144-179300397(-)$1	253	32	62	10.5942
UCUCCCGCUGGCCACAGAUGGCAGACCUUG	chr16:67320750-67321011(+)$1	261	135	165	12.4083
ACGGGCUUGUUCCUACAGGCGCUGAUCCCG	chr15:91493208-91493522(+)$1	314	157	187	10.1215
UGCUCCCGGGCCAUCCCACAGGUGCCACGC	chr15:22927974-22928260(+)$1	286	211	241	11.4313
CUCCACAGUGACAUCACCGAGGAGGACUUG	chr11:71949161-71949410(+)$1	249	137	167	11.7328
GUCAUGACUCCGGUGAGUUCACACGUGGUG	chr16:31199558-31199802(+)$1	244	108	138	8.7051
UGGUGAGUCCUCAGGGAUUCUGAGCAAGGG	chr15:75652449-75652691(-)$1	242	42	72	11.1117
UCUCUGGGCACCUCUGACCCUCACCUCCCC	chr22:19955899-19956162(+)$1	263	108	138	9.5282
GGCCGCCAGGACGCCGUGGAGGACCGGCUG	chr19:7711895-7712172(+)$1	277	143	173	9.6131
AAACCUAUUGAUGGCAAUUUUGCUGACUGU	chr2:20240640-20240917(-)$1	277	150	180	9.6902
UGUAGCUCAUGGACAUGGGCUUCACAAGGG	chrX:53617908-53618219(-)$1	311	132	162	10.3503
GGGGUGGGGCCCUGGUCACGCCUCUCCAAC	chr11:67200270-67200529(+)$1	259	110	140	11.1566
AGCAAUUAUUUACAAGUGUGUUUUGUUAUA	chr2:61725795-61726072(-)$1	277	114	144	8.8025
GCUUCUUGGGAUGGCCCAAGCUGGGGCCCU	chr19:42402468-42402750(+)$1	282	72	102	10.5976
AAGCCACAUGGUGACAUAUGCCUUCCCUUU	chr11:118962683-118963000(+)$1	317	206	236	12.1752
GGUGUUUGGUGAUGACUCUGAGAUCUCUAA	chr1:150300622-150300892(+)$1	270	158	188	11.2210
AGAGGUAAUGCAUACAUCCUCCGCCCCUAA	chr1:23765197-23765487(-)$1	290	120	150	11.6611
UGCUGAAGGGCCACCCCUUCUUCUAUGUGC	chr1:227171650-227171919(+)$1	269	149	179	11.3555
CAGACGUAUGAUGACAUCGACGACGUGGUG	chr19:5039740-5039981(+)$1	241	136	166	11.1171
CCUGAAGGCUGACAGGUCUUCAGCUCUCAG	chr20:62591364-62591639(-)$1	275	52	82	11.2071
CAGGGGAGCCAGGGGGCCCCUCUGUUGAGU	chr16:29813938-29814221(+)$1	283	227	257	10.9475
ACUCGGUAAGUUUUCUUUCCUUGGGUGUAG	chr16:23494198-23494473(-)$1	275	225	255	11.4015
AAACAUGUGGAAUCCCAAUGCCGGUAGGUG	chr12:53836322-53836653(+)$1	331	172	202	13.3214
UAUGGCCAGGGCAUCCUGAGCCAGGUGCGG	chr17:80043153-80043426(-)$1	273	45	75	9.2054
GGUAAUUUCAAAUCUGAAGAUCUUUUGGUA	chr6:134494367-134494640(-)$1	273	40	70	8.8247
GUAGAAAGGGACAGCCUAUUUGUGCCUGUU	chr19:39879402-39879649(-)$1	247	82	112	12.2631
AUAAAUACUAAUUAUAGAUUAUAUGUUUUG	chr6:79725370-79725653(-)$1	283	68	98	11.1364
gagugcuucccagaggaaguggcaguugag	chr19:42395945-42396209(+)$1	264	12	42	11.8456
augacaccagaauucugcuucuuAGGCUUC	chr4:76583973-76584260(-)$1	287	81	111	10.7129
UUGCUAACAACCGCUUUGAGACAGGGAAGA	chr11:65653011-65653307(-)$1	296	196	226	8.2949
GUCCUGGCGGGGCCCUGGCACCCACACCCC	chr4:1985309-1985570(-)$1	261	104	134	12.7015
UGUCAGUCACUUUGUGCUGGGGCAGCUGAG	chr7:99049816-99050100(+)$1	284	37	67	8.4114
UCCAGGUAAGUGACAUUUCCUUAGACUUAA	chr1:52551667-52551992(+)$1	325	171	201	8.7804
CAGCCCGCUGUGGCCAGAAGCUAAGUCCCG	chr10:43694529-43694794(-)$1	265	29	59	11.7294
GUUGAUCGAUGUCAGUCAGUCAGUAGAACC	chr18:21056988-21057264(+)$1	276	159	189	11.8536
UUAUUCUGGCCAUAGCUAUAAGAAAAUUGU	chr19:34925633-34925889(+)$1	256	5	35	11.6540
UACGCACGAUCUGGUCUGGGAACAGCAGAG	chr1:185270064-185270315(-)$1	251	157	187	8.9432
augcugcaguaggcacuguggaaaaugcuu	chr10:62539749-62540043(+)$1	294	41	71	9.8437
UCGAUGAGGUGGACGCCUUCCGCUGCUUCU	chr14:105615090-105615327(-)$1	237	180	210	9.8784
CCUGGUGUCUAGAAGGAACCUAGUGAGUCC	chr16:89720188-89720482(-)$1	294	56	86	10.3334
GUAUAUAUAUAUACAUAUAUAAAACAUCAC	chr12:132198469-132198722(+)$1	253	57	87	11.4100
GGCCAGGGUAAAGUUGCCUUAGCUUGCAGC	chr1:150940872-150941135(-)$1	263	68	98	10.7664
GUGAACUGGCUUAAACCAGUUUACAUGCUG	chr6:75968540-75968872(-)$1	332	184	214	8.9665
CGGAAUACGACGCUUCAUGUUUUGGGGGCA	chr19:15378243-15378519(-)$1	276	43	73	10.1447
AAGGUGAUGCACAUGUUCAAGGGUUGUCGG	chr17:27448115-27448388(-)$1	273	156	186	10.3329
UGCUCCCGGGAGGGUCCCCGGGGGUGCCGA	chr8:41556921-41557211(-)$1	290	250	280	8.8873
GCUGGGUAGCGGCGGCUUCGGCACGGUCUA	chr22:50354815-50355090(+)$1	275	6	36	11.1212
GUGACACUAUUCAGUGGCUGUACACAUUGU	chr16:67271926-67272176(-)$1	250	199	229	8.9990
UCCUCCAUGAguaguggugguggcaguggu	chr16:31196148-31196402(+)$1	254	131	161	9.2640
GUGGAGACAGAUUACUGUCUGCUGCUGGCU	chr1:16265060-16265350(+)$1	290	152	182	11.4331
GUUCAUUAACUUACUGUUUCUUGAAAUUUG	chr17:30689829-30690108(+)$1	279	62	92	8.8420
AGACGGUCUGGGGGCAGUGUCAGUAUUCUC	chr11:46678492-46678802(+)$1	310	87	117	12.1566
UGCAAAAGACUAUGGGAUUUUGUUACCAGA	chr11:9446541-9446824(+)$1	283	155	185	9.2569
AUCGGGUGGGGGCAUUUGGCCGACUGCCGG	chr19:8386389-8386670(+)$1	281	201	231	9.8030

#DB
(.(..((((((...))))))..)))).)))	chr19:6744417-6744671(+)$1	1	176	206	8.7670
(..(((((((....))))))).))))).))	chrX:53585887-53586160(-)$1	1	189	219	8.8255
(((.((((((....)))))).))))....)	chr5:179300144-179300397(-)$1	1	32	62	10.5942
(((.((((((....))).))).))).))))	chr16:67320750-67321011(+)$1	1	135	165	12.4083
((((((((((....)))))).))).))).)	chr15:91493208-91493522(+)$1	1	157	187	10.1215
.((.((.(((....)))...)).))...))	chr15:22927974-22928260(+)$1	1	211	241	11.4313
((((.(.(((....))).).))))....))	chr11:71949161-71949410(+)$1	1	137	167	11.7328
((...(((((....)))))...))))))))	chr16:31199558-31199802(+)$1	1	108	138	8.7051
((..((((((....))))))....))))))	chr15:75652449-75652691(-)$1	1	42	72	11.1117
.....(((((....)).)))..)))).)))	chr22:19955899-19956162(+)$1	1	108	138	9.5282
((((.(((.(....).))).)).))))..)	chr19:7711895-7712172(+)$1	1	143	173	9.6131
(((...((((....))))))))))..))).	chr2:20240640-20240917(-)$1	1	150	180	9.6902
((.(((((((....))))))).)).)))))	chrX:53617908-53618219(-)$1	1	132	162	10.3503
((((((.(((....))).)))))).)).))	chr11:67200270-67200529(+)$1	1	110	140	11.1566
((((..((((....)))))))))).)))).	chr2:61725795-61726072(-)$1	1	114	144	8.8025
.(..((((((....))))))..).))))..	chr19:42402468-42402750(+)$1	1	72	102	10.5976
(((.((.(((....))).)).)))))))..	chr11:118962683-118963000(+)$1	1	206	236	12.1752
(((.((.(((....)))..)).)))))).)	chr1:150300622-150300892(+)$1	1	158	188	11.2210
.((((..(((....))))))).))))))).	chr1:23765197-23765487(-)$1	1	120	150	11.6611
.(..((((((....))))))..)...)).)	chr1:227171650-227171919(+)$1	1	149	179	11.3555
..(.((.(((....))))).)..)))))).	chr19:5039740-5039981(+)$1	1	136	166	11.1171
.(((((((((....)))))))))..).)))	chr20:62591364-62591639(-)$1	1	52	82	11.2071
((((((.(((....))).))))))..))).	chr16:29813938-29814221(+)$1	1	227	257	10.9475
((((((.(((....))).))..))))))))	chr16:23494198-23494473(-)$1	1	225	255	11.4015
(..(((.(((....))))))....))))))	chr12:53836322-53836653(+)$1	1	172	202	13.3214
..((((((((....)))).))))..)))))	chr17:80043153-80043426(-)$1	1	45	75	9.2054
(((..(((((....))))))))))))((((	chr6:134494367-134494640(-)$1	1	40	70	8.8247
(((.((((((....))).))).))))...)	chr19:39879402-39879649(-)$1	1	82	112	12.2631
((((((.(((....)))))).)))))))..	chr6:79725370-79725653(-)$1	1	68	98	11.1364
...(((((((....)))))))....)))).	chr19:42395945-42396209(+)$1	1	12	42	11.8456
(.((...(((....)))..)).))))))..	chr4:76583973-76584260(-)$1	1	81	111	10.7129
(((((..(((.....))))).)))))))))	chr11:65653011-65653307(-)$1	1	196	226	8.2949
....((.(((....))).))....))))))	chr4:1985309-1985570(-)$1	1	104	134	12.7015
(.((((.(((...))))))).))))))).)	chr7:99049816-99050100(+)$1	1	37	67	8.4114
(..(((.((((...)))))))..)))))).	chr1:52551667-52551992(+)$1	1	171	201	8.7804
.(((...(((....)))..)))..))))..	chr10:43694529-43694794(-)$1	1	29	59	11.7294
..((((.(((....))).)))).))).)))	chr18:21056988-21057264(+)$1	1	159	189	11.8536
(..(((((((....)))...))))....))	chr19:34925633-34925889(+)$1	1	5	35	11.6540
(.(.((.(((...))))).).)).))))))	chr1:185270064-185270315(-)$1	1	157	187	8.9432
((((((((((....))))))).........	chr10:62539749-62540043(+)$1	1	41	71	9.8437
.((..(((((....))))).)).)))...)	chr14:105615090-105615327(-)$1	1	180	210	9.8784
(((((..(((....)))..)))).)))).(	chr16:89720188-89720482(-)$1	1	56	86	10.3334
((.(((((((....)))))))..))).)))	chr12:132198469-132198722(+)$1	1	57	87	11.4100
(((.((((((....)))))).)))).))).	chr1:150940872-150941135(-)$1	1	68	98	10.7664
(((((((((......)))))))))).))))	chr6:75968540-75968872(-)$1	1	184	214	8.9665
(((((((.((....)).)))))))))((((	chr19:15378243-15378519(-)$1	1	43	73	10.1447
((..(((.((....)))))....)))..))	chr17:27448115-27448388(-)$1	1	156	186	10.3329
((((((((((......))))))))))))))	chr8:41556921-41557211(-)$1	1	250	280	8.8873
(((((..(((....)))))))))))))...	chr22:50354815-50355090(+)$1	1	6	36	11.1212
((((((((((...)))).)))...))))))	chr16:67271926-67272176(-)$1	1	199	229	8.9990
(((.((((.(....).)))).)).).))))	chr16:31196148-31196402(+)$1	1	131	161	9.2640
..(.((((((....)))))).)..))))((	chr1:16265060-16265350(+)$1	1	152	182	11.4331
.((((..(((.....)))...))))....)	chr17:30689829-30690108(+)$1	1	62	92	8.8420
.((((..(((....)))))))....)))))	chr11:46678492-46678802(+)$1	1	87	117	12.1566
.((((((..(....)..)))))))))))))	chr11:9446541-9446824(+)$1	1	155	185	9.2569
.((((.((((....)))).)))).)))).)	chr19:8386389-8386670(+)$1	1	201	231	9.8030

#PSSM
f : 0.14	d : 0.12	! : 0.12	[ : 0.10	g : 0.10	c : 0.08	b : 0.07	= : 0.05	e : 0.03	" : 0.03	# : 0.03	i : 0.03	$ : 0.01	a : 0.01	
d : 0.19	f : 0.12	! : 0.10	c : 0.08	g : 0.08	[ : 0.07	b : 0.07	i : 0.05	= : 0.05	a : 0.03	" : 0.03	# : 0.03	e : 0.01	$ : 0.01	
d : 0.23	! : 0.14	f : 0.10	b : 0.08	g : 0.08	a : 0.07	c : 0.05	i : 0.05	= : 0.05	[ : 0.03	# : 0.03	" : 0.01	$ : 0.01	
[ : 0.19	d : 0.17	! : 0.12	g : 0.10	c : 0.10	f : 0.07	b : 0.05	= : 0.05	" : 0.03	i : 0.03	$ : 0.01	# : 0.01	
f : 0.17	d : 0.17	b : 0.14	c : 0.12	g : 0.08	! : 0.07	" : 0.07	= : 0.05	[ : 0.03	i : 0.03	$ : 0.01	
f : 0.19	c : 0.16	b : 0.12	! : 0.12	g : 0.08	d : 0.08	e : 0.05	" : 0.05	i : 0.03	= : 0.03	a : 0.01	[ : 0.01	
[ : 0.26	f : 0.16	d : 0.12	! : 0.10	g : 0.08	c : 0.08	e : 0.05	i : 0.03	" : 0.03	= : 0.03	
c : 0.48	f : 0.14	d : 0.12	g : 0.08	e : 0.05	= : 0.03	[ : 0.03	i : 0.01	! : 0.01	
c : 0.44	f : 0.14	d : 0.10	g : 0.08	e : 0.05	b : 0.05	[ : 0.03	= : 0.03	i : 0.01	! : 0.01	
c : 0.44	f : 0.14	d : 0.10	g : 0.08	e : 0.05	b : 0.05	a : 0.05	i : 0.01	o : 0.01	= : 0.01	
m : 0.83	l : 0.05	n : 0.03	o : 0.03	f : 0.01	d : 0.01	
m : 0.83	l : 0.08	n : 0.03	o : 0.03	
m : 0.83	l : 0.08	n : 0.03	o : 0.03	
m : 0.83	l : 0.03	n : 0.03	c : 0.03	o : 0.03	d : 0.01	
c : 0.41	f : 0.14	d : 0.10	g : 0.08	e : 0.05	b : 0.05	a : 0.05	n : 0.03	o : 0.03	i : 0.01	
c : 0.44	f : 0.14	d : 0.10	g : 0.08	e : 0.05	b : 0.05	] : 0.03	i : 0.01	= : 0.01	o : 0.01	2 : 0.01	
c : 0.44	f : 0.14	d : 0.14	g : 0.08	e : 0.05	] : 0.03	= : 0.03	i : 0.01	b : 0.01	2 : 0.01	
] : 0.17	f : 0.16	d : 0.16	c : 0.12	g : 0.08	2 : 0.07	e : 0.05	= : 0.05	3 : 0.03	b : 0.03	i : 0.03	
f : 0.23	c : 0.16	g : 0.08	b : 0.08	d : 0.08	2 : 0.07	3 : 0.05	e : 0.05	] : 0.05	= : 0.05	i : 0.03	a : 0.01	
f : 0.23	c : 0.14	d : 0.14	g : 0.10	b : 0.10	3 : 0.07	] : 0.07	= : 0.05	i : 0.03	a : 0.01	4 : 0.01	
] : 0.17	d : 0.14	g : 0.10	2 : 0.08	c : 0.08	b : 0.08	f : 0.08	4 : 0.07	= : 0.05	3 : 0.03	i : 0.03	a : 0.01	
d : 0.16	2 : 0.14	] : 0.12	b : 0.10	4 : 0.10	f : 0.08	g : 0.05	i : 0.05	= : 0.05	c : 0.03	3 : 0.03	> : 0.01	a : 0.01	
d : 0.19	f : 0.12	4 : 0.10	2 : 0.08	] : 0.07	b : 0.07	g : 0.07	a : 0.05	i : 0.05	= : 0.05	e : 0.03	c : 0.03	> : 0.01	3 : 0.01	
d : 0.17	c : 0.14	f : 0.12	4 : 0.08	] : 0.08	g : 0.07	2 : 0.07	e : 0.05	= : 0.05	b : 0.03	3 : 0.03	i : 0.03	> : 0.01	
d : 0.24	c : 0.14	g : 0.10	] : 0.07	4 : 0.07	f : 0.07	2 : 0.07	e : 0.05	= : 0.05	i : 0.03	b : 0.01	3 : 0.01	> : 0.01	a : 0.01	
d : 0.23	c : 0.12	g : 0.12	f : 0.10	4 : 0.07	] : 0.07	e : 0.05	b : 0.03	3 : 0.03	2 : 0.03	i : 0.03	= : 0.03	a : 0.01	> : 0.01	
d : 0.21	f : 0.12	c : 0.12	g : 0.10	] : 0.08	4 : 0.07	e : 0.05	b : 0.05	3 : 0.05	= : 0.03	F : 0.01	i : 0.01	> : 0.01	2 : 0.01	
d : 0.19	f : 0.14	e : 0.10	c : 0.10	g : 0.10	4 : 0.07	3 : 0.05	: : 0.03	2 : 0.03	F : 0.03	a : 0.01	G : 0.01	] : 0.01	b : 0.01	i : 0.01	> : 0.01	
c : 0.14	f : 0.12	d : 0.10	e : 0.10	] : 0.08	g : 0.08	2 : 0.07	: : 0.05	4 : 0.03	F : 0.03	3 : 0.03	B : 0.01	G : 0.01	7 : 0.01	i : 0.01	> : 0.01	h : 0.01	
f : 0.12	c : 0.12	e : 0.10	d : 0.08	: : 0.07	2 : 0.07	g : 0.07	h : 0.05	] : 0.05	B : 0.03	b : 0.03	F : 0.03	G : 0.01	7 : 0.01	9 : 0.01	i : 0.01	> : 0.01	3 : 0.01	C : 0.01	

#score	585.6416044037697
#seq	56
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_CDS_m2_run2.txt

#BEAR
cc[bba[ccc[bbnnnnnbb]ccc]a]bb	chr19:19640014-19640315(+)$1	301	173	202	13.1003
ffffff"""ddddnnnnnddddffffff]	chr1:228329286-228329568(+)$1	282	195	224	10.8268
b[eeeee[bb[bbnnnnnbb]bb]eeeee	chr17:934805-935103(-)$1	298	229	258	11.8594
[a!!ccc[bb[bboooooobb]bb]ccc2	chr11:72384986-72385282(-)$1	296	176	205	9.1579
c============nnnnn===========	chr14:23994647-23994881(+)$1	234	157	186	15.1602
[ccc[ccceeeeennnnneeeee]ccccc	chr10:134210677-134210931(+)$1	254	49	78	12.2704
cc[dddd[cccbboooooobb]ccc]ddd	chr20:35491222-35491482(-)$1	260	129	158	8.9561
EEggggggg"""annnnna333ggggggg	chr16:4431609-4431876(-)$1	267	90	119	12.1813
bdddd!!bb[cccnnnnncccbb22dddd	chr4:1231752-1232042(-)$1	290	218	247	11.4743
b[ddddgggggggnnnnnggggggg]ddd	chr17:75478484-75478717(+)$1	233	151	180	12.4134
b[ccc!!ffffffnnnnnffffffccc]b	chr11:704364-704618(-)$1	254	201	230	12.3184
dddd[eeeee[bbnnnnnbbeeeee]ddd	chr19:2270417-2270679(+)$1	262	156	185	11.9764
::===========nnnnn===========	chr5:176899086-176899338(-)$1	252	185	214	13.4375
bb[eeeee!!cccnnnnnccc]eeeeebb	chr22:20785066-20785356(-)$1	290	167	196	11.8686
f!!ffffff!!bbnnnnnbb333ffffff	chr17:79860086-79860313(-)$1	227	189	218	12.9043
!!ccc[a[eeeeennnnneeeee]a4444	chr21:45223338-45223601(+)$1	263	139	168	12.5676
c[bb"""ffffffnnnnnffffffbbccc	chr12:132401935-132402190(+)$1	255	56	85	11.7608
[a[eeeee!!cccnnnnnccc22eeeeea	chr5:176868668-176868891(-)$1	223	136	165	12.1445
[a[ffffff!!bbnnnnnbb22ffffffa	chr19:47729785-47730003(-)$1	218	165	194	12.5912
c"""ffffff[bbnnnnnbb]ffffff44	chr20:32251363-32251635(-)$1	272	184	213	12.9963
#bb[a!!ffffffnnnnnffffff22abb	chr5:137803403-137803631(+)$1	228	18	47	11.9438
fff!!dddd[cccnnnnnccc22dddd22	chr6:32936915-32937151(+)$1	236	124	153	11.1922
dd:bb[gggggggnnnnnggggggg]bb:	chr21:47565667-47565901(-)$1	234	52	81	10.7820
Ciiiiiiiiiccclllccc333iiiiiii	chr17:74379797-74380034(+)$1	237	85	114	8.9857
gggggg]ccccccnnnnnccceeeee[cc	chr19:1466848-1467069(-)$1	221	128	157	12.3656
e:============lll============	chr14:103576664-103576886(+)$1	222	131	160	10.3581
!bb[bb[ffffffnnnnnffffff]bb]b	chr19:1467273-1467539(-)$1	266	66	95	11.4302
ggggg!!bb[bboooooobb]bb333ggg	chr11:66625377-66625608(-)$1	231	72	101	9.6039
iiii[bbccc[bbnnnnnbb]ccc22bb]	chr19:59074107-59074388(+)$1	281	130	159	12.9608
hhhhhhh[cccbbnnnnnbb22ccc22hh	chr11:66625137-66625404(-)$1	267	146	175	11.2777
dd:bb[gggggggnnnnnggggggg]bb:	chr21:47565717-47565955(-)$1	238	106	135	10.7820
[ccc[ccceeeeennnnneeeee]ccccc	chr10:134210601-134210870(+)$1	269	125	154	12.2704
ccc[aeeeee[aooooooaeeeee]a]cc	chr19:2425814-2426071(-)$1	257	226	255	9.2531
ffff[a!!eeeeennnnneeeee22a]ff	chr10:133769139-133769400(+)$1	261	78	107	11.5812
dddd!!ddddcccnnnnnccc]dddd22d	chr21:46876016-46876267(+)$1	251	3	32	11.1388
h"""bb!!bb[bbnnnnnbb]bb22bb33	chr19:56599675-56599900(-)$1	225	124	153	12.3544
occcdddd"""bbnnnnnbb333ddddFF	chr13:113760102-113760332(+)$1	230	146	175	11.2339
dddddccc[bbbbnnnnnbb]bb22ccc]	chr16:2570290-2570571(+)$1	281	149	178	11.8130
iiiiiiiibb[aooooooa]bb22iiiii	chr16:29818044-29818303(-)$1	259	1	30	9.1993
cdddd[gggggggnnnnnggggggg]ddd	chr10:103589508-103589758(-)$1	250	206	235	12.6980
fgggggggcccbbnnnnnbb]ccc]gggg	chr11:63766288-63766531(+)$1	243	112	141	13.5292
ccc"""bb[ddddnnnnndddd]bb333c	chr7:766500-766756(-)$1	256	141	170	11.4915
==========[ccclllccc=========	chr12:62996695-62996985(+)$1	290	133	162	10.8165
a####ffffff[annnnna]ffffffa]c	chr9:139944605-139944839(-)$1	234	165	194	12.3387
bb:==========oooooo==========	chrX:41193771-41194036(+)$1	265	142	171	10.2098
ciiiiiiiii!!annnnna22iiiiiiii	chr10:696806-697082(-)$1	276	171	200	13.8070
Gffffff[ccc[annnnna]cccffffff	chr17:79860147-79860449(-)$1	302	149	178	11.3209
dddd"""ccccccnnnnnccc4444ccc3	chr11:63884871-63885111(-)$1	240	74	103	13.1022
c[a!!bb[eeeeennnnneeeeebb22ac	chr7:766750-767002(-)$1	252	141	170	11.3717
e:============lll============	chr14:103576589-103576856(+)$1	267	206	235	10.3581
c:============lll============	chr14:103576686-103576903(+)$1	217	109	138	10.5551
!cccdddd[ddddnnnnndddd]dddd33	chr17:80696279-80696532(+)$1	253	48	77	10.9643
eeeee$$$$$cccnnnnnccc4444eeee	chr19:49842836-49843074(-)$1	238	183	212	11.1472
cccdddd[bb[bbnnnnnbb]bbdddd]c	chr14:23991938-23992205(+)$1	267	226	255	12.0522
gggggggffffffnnnnnffffff22ggg	chr2:241499977-241500266(-)$1	289	6	35	12.4746
eeeebb!!eeeeennnnneeeee333bbD	chr17:40996990-40997257(+)$1	267	131	160	10.6920
ccc[bbbb[ddddnnnnndddd]bb]bb]	chr2:263881-264144(-)$1	263	194	223	10.6023
%%%gggggggcccnnnnnccc]ggggggg	chr19:577797-578046(+)$1	249	83	112	11.7799

#otherMatches

#Seq PSSM
GCCCCCACUUGCCGACAUGGGAAGAGCGG	chr19:19640014-19640315(+)$1	301	173	202	13.1003
CAGGAGACCUUCCAUCUCGGAGCUCCUGU	chr1:228329286-228329568(+)$1	282	195	224	10.8268
CUGGGGCCGCGUGCGCAACAAGCUGCUCC	chr17:934805-935103(-)$1	298	229	258	11.8594
AGGAGCUGGGGUUGGCAUGGAGCUGAGCC	chr11:72384986-72385282(-)$1	296	176	205	9.1579
AAGCCAAAGUUUUCUAGAAGGGCUUUGGC	chr14:23994647-23994881(+)$1	234	157	186	15.1602
GAGCAUGGAGCCGCGCGCCGGCUGCCGGC	chr10:134210677-134210931(+)$1	254	49	78	12.2704
GCCUGCUGGGCCUGGAGCUGGCGCUGAGC	chr20:35491222-35491482(-)$1	260	129	158	8.9561
ACGCAGUUGAAGGGGUUGCGGGCAGCUGC	chr16:4431609-4431876(-)$1	267	90	119	12.1813
AGGUGGACACGGGGUUUUCCCUGGACACC	chr4:1231752-1232042(-)$1	290	218	247	11.4743
CAGGGCCCCUGAGAUGACUUUGGGGAGCC	chr17:75478484-75478717(+)$1	233	151	180	12.4134
GAAGUCGGCCCAGGACAACUGGGUGCUCC	chr11:704364-704618(-)$1	254	201	230	12.3184
UCCCGGGAAGACGCGUCCCGCUUCCGGGG	chr19:2270417-2270679(+)$1	262	156	185	11.9764
AUGGACGCGAGAGACAAGCUCUCGUGUCC	chr5:176899086-176899338(-)$1	252	185	214	13.4375
CCAGUGCAAGGGCCAGCAGCCGUGCACGG	chr22:20785066-20785356(-)$1	290	167	196	11.8686
CGUCCGGGCUCGGAGCAGCCACCGCCUGG	chr17:79860086-79860313(-)$1	227	189	218	12.9043
GGCAGAGGCUGGUGAGCAGCCAGGCACAG	chr21:45223338-45223601(+)$1	263	139	168	12.5676
GAGCCCGUGCUGGGGGCACCAGCAGCCCU	chr12:132401935-132402190(+)$1	255	56	85	11.7608
GCAGUUUCCACAGCAAUCCUGGAGGGACG	chr5:176868668-176868891(-)$1	223	136	165	12.1445
GCACAGUACGAGCGGCGGGUGAGUGCUGG	chr19:47729785-47730003(-)$1	218	165	194	12.5912
CAAUCUGGGUGCCGCCGGGGAGCCCAGCC	chr20:32251363-32251635(-)$1	272	184	213	12.9963
AAGUGUUGUGGCCUCUUCGGccaccuccu	chr5:137803403-137803631(+)$1	228	18	47	11.9438
UCCGUACCCAUUGGAGGGCAAAGGGGUUA	chr6:32936915-32937151(+)$1	236	124	153	11.1922
UGAGCGCGGGCCUGAGCGAGGCCUGGGCA	chr21:47565667-47565901(-)$1	234	52	81	10.7820
CGCCCCUUCUUCACGCUGAGCCAGAGGGG	chr17:74379797-74380034(+)$1	237	85	114	8.9857
GGCGUCUUGCUCCGGCUGGGAGGCAUGGU	chr19:1466848-1467069(-)$1	221	128	157	12.3656
UAUCGGGCGGGGGGGGGCCUCCCGCCCGA	chr14:103576664-103576886(+)$1	222	131	160	10.3581
GUCAGUGCAGGAGUCGUCCUCCUGGGCCG	chr19:1467273-1467539(-)$1	266	66	95	11.4302
CCUGUUGCCGUCAAGGUGGAGGGAACGCA	chr11:66625377-66625608(-)$1	231	72	101	9.6039
CCAGGGCCCGGGGGAUCGCCGUGGAUGCG	chr19:59074107-59074388(+)$1	281	130	159	12.9608
CCGCUCCACUGGCCAGCAGCAGCAGCAGG	chr11:66625137-66625404(-)$1	267	146	175	11.2777
UGAGCGCGGGCCUGAGCGAGGCCUGGGCA	chr21:47565717-47565955(-)$1	238	106	135	10.7820
GAGCAUGGAGCCGCGCGCCGGCUGCCGGC	chr10:134210601-134210870(+)$1	269	125	154	12.2704
gugacccuagugacuuccccugggagccg	chr19:2425814-2426071(-)$1	257	226	255	9.2531
CUUCAGGAUGUUUGAUAGAGACACGCGGA	chr10:133769139-133769400(+)$1	261	78	107	11.5812
CCCAUCGCCUCCCUCCCUGGGCAGGCCCU	chr21:46876016-46876267(+)$1	251	3	32	11.1388
cgcggcagccauggcgggcgcgggggcaa	chr19:56599675-56599900(-)$1	225	124	153	12.3544
UUGGUGGAAGGGCAGUGGGCAAAUCCAGG	chr13:113760102-113760332(+)$1	230	146	175	11.2339
CGCUCCCGACACGGCUCACGAUGCGCGGC	chr16:2570290-2570571(+)$1	281	149	178	11.8130
cggccugcggagacaaggcgccgaguggg	chr16:29818044-29818303(-)$1	259	1	30	9.1993
AUCUUGGGGUGGGGGGCACUUGCCUGggg	chr10:103589508-103589758(-)$1	250	206	235	12.6980
gccguggggcggcgcggggcACGUACCCA	chr11:63766288-63766531(+)$1	243	112	141	13.5292
GCUCAGGCAGCGCAGCAAGCGCGGCAGCA	chr7:766500-766756(-)$1	256	141	170	11.4915
GGCUGCUGUUUGGCGGAGCCGGCGGCAGC	chr12:62996695-62996985(+)$1	290	133	162	10.8165
GGAACUUUGUCGUGGGUAGGGACAGGCGG	chr9:139944605-139944839(-)$1	234	165	194	12.3387
CUGGAGGCCCUUUUGGCUUGGAGGGCUUC	chrX:41193771-41194036(+)$1	265	142	171	10.2098
CCGGCUUUGGAAGAGAAACAGCCAGAGCU	chr10:696806-697082(-)$1	276	171	200	13.8070
CCUGCGGAGGCCGGACAGCAGCCCCGCGG	chr17:79860147-79860449(-)$1	302	149	178	11.3209
CCCGUGGCCAUGGGGUAGUCAAUGUUGGA	chr11:63884871-63885111(-)$1	240	74	103	13.1022
CAGAGCGUCGUCCAgguggggcgcgagcg	chr7:766750-767002(-)$1	252	141	170	11.3717
UAUCGGGCGGGGGGGGGCCUCCCGCCCGA	chr14:103576589-103576856(+)$1	267	206	235	10.3581
UAUCGGGCGGGGGGGGGCCUCCCGCCCGA	chr14:103576686-103576903(+)$1	217	109	138	10.5551
AGUCAACAAGGCUGACAAGGCUGUGUUCU	chr17:80696279-80696532(+)$1	253	48	77	10.9643
CGCAGCCAAUAGCAGGAGGCUUUCCCUGC	chr19:49842836-49843074(-)$1	238	183	212	11.1472
GGAAGGAUGAAGGAUUAGCCAUCUCCUGU	chr14:23991938-23992205(+)$1	267	226	255	12.0522
GCGGGAGACGUUGACGCACAGCGUGACUC	chr2:241499977-241500266(-)$1	289	6	35	12.4746
UGCCCUAUCACCGUCGCCCGGUGCUGAGA	chr17:40996990-40997257(+)$1	267	131	160	10.6920
CCCUCCCCUCUCAAGAGCUGGGCGGUGGU	chr2:263881-264144(-)$1	263	194	223	10.6023
GAAGGGCAGGGUCCCAACGACACCUGCUC	chr19:577797-578046(+)$1	249	83	112	11.7799

#DB
((.(((.(((.((.....)).))).).))	chr19:19640014-19640315(+)$1	1	173	202	13.1003
((((((...((((.....)))))))))).	chr1:228329286-228329568(+)$1	1	195	224	10.8268
(.(((((.((.((.....)).)).)))))	chr17:934805-935103(-)$1	1	229	258	11.8594
.(..(((.((.((......)).)).))).	chr11:72384986-72385282(-)$1	1	176	205	9.1579
)((((((((((((.....)))))))))))	chr14:23994647-23994881(+)$1	1	157	186	15.1602
.(((.((((((((.....))))).)))))	chr10:134210677-134210931(+)$1	1	49	78	12.2704
((.((((.(((((......)).))).)))	chr20:35491222-35491482(-)$1	1	129	158	8.9561
))(((((((...(.....)...)))))))	chr16:4431609-4431876(-)$1	1	90	119	12.1813
(((((..((.(((.....)))))..))))	chr4:1231752-1232042(-)$1	1	218	247	11.4743
(.(((((((((((.....))))))).)))	chr17:75478484-75478717(+)$1	1	151	180	12.4134
(.(((..((((((.....))))))))).)	chr11:704364-704618(-)$1	1	201	230	12.3184
((((.(((((.((.....))))))).)))	chr19:2270417-2270679(+)$1	1	156	185	11.9764
..(((((((((((.....)))))))))))	chr5:176899086-176899338(-)$1	1	185	214	13.4375
((.(((((..(((.....))).)))))))	chr22:20785066-20785356(-)$1	1	167	196	11.8686
(..((((((..((.....))...))))))	chr17:79860086-79860313(-)$1	1	189	218	12.9043
..(((.(.(((((.....))))).)....	chr21:45223338-45223601(+)$1	1	139	168	12.5676
(.((...((((((.....)))))))))))	chr12:132401935-132402190(+)$1	1	56	85	11.7608
.(.(((((..(((.....)))..))))))	chr5:176868668-176868891(-)$1	1	136	165	12.1445
.(.((((((..((.....))..)))))))	chr19:47729785-47730003(-)$1	1	165	194	12.5912
(...((((((.((.....)).))))))..	chr20:32251363-32251635(-)$1	1	184	213	12.9963
.((.(..((((((.....))))))..)))	chr5:137803403-137803631(+)$1	1	18	47	11.9438
(((..((((.(((.....)))..))))..	chr6:32936915-32937151(+)$1	1	124	153	11.1922
)).((.(((((((.....))))))).)).	chr21:47565667-47565901(-)$1	1	52	81	10.7820
(((((((((((((...)))...)))))))	chr17:74379797-74380034(+)$1	1	85	114	8.9857
)))))).)))(((.....)))(((((.((	chr19:1466848-1467069(-)$1	1	128	157	12.3656
).((((((((((((...))))))))))))	chr14:103576664-103576886(+)$1	1	131	160	10.3581
.((.((.((((((.....)))))).)).)	chr19:1467273-1467539(-)$1	1	66	95	11.4302
(((((..((.((......)).))...)))	chr11:66625377-66625608(-)$1	1	72	101	9.6039
((((.(((((.((.....)).)))..)).	chr19:59074107-59074388(+)$1	1	130	159	12.9608
(((((((.(((((.....))..)))..))	chr11:66625137-66625404(-)$1	1	146	175	11.2777
)).((.(((((((.....))))))).)).	chr21:47565717-47565955(-)$1	1	106	135	10.7820
.(((.((((((((.....))))).)))))	chr10:134210601-134210870(+)$1	1	125	154	12.2704
(((.((((((.(......)))))).).))	chr19:2425814-2426071(-)$1	1	226	255	9.2531
((((.(..(((((.....)))))..).))	chr10:133769139-133769400(+)$1	1	78	107	11.5812
((((..(((((((.....))).))))..)	chr21:46876016-46876267(+)$1	1	3	32	11.1388
(...((..((.((.....)).))..))..	chr19:56599675-56599900(-)$1	1	124	153	12.3544
.)))((((...((.....))...))))))	chr13:113760102-113760332(+)$1	1	146	175	11.2339
((((((((.((((.....)).))..))).	chr16:2570290-2570571(+)$1	1	149	178	11.8130
((((((((((.(......).))..)))))	chr16:29818044-29818303(-)$1	1	1	30	9.1993
(((((.(((((((.....))))))).)))	chr10:103589508-103589758(-)$1	1	206	235	12.6980
)((((((((((((.....)).))).))))	chr11:63766288-63766531(+)$1	1	112	141	13.5292
(((...((.((((.....)))).))...)	chr7:766500-766756(-)$1	1	141	170	11.4915
((((((((((.(((...))))))))))))	chr12:62996695-62996985(+)$1	1	133	162	10.8165
(....((((((.(.....).))))))).)	chr9:139944605-139944839(-)$1	1	165	194	12.3387
)).((((((((((......))))))))))	chrX:41193771-41194036(+)$1	1	142	171	10.2098
((((((((((..(.....)..))))))))	chr10:696806-697082(-)$1	1	171	200	13.8070
)((((((.(((.(.....).)))))))))	chr17:79860147-79860449(-)$1	1	149	178	11.3209
((((...((((((.....)))....))).	chr11:63884871-63885111(-)$1	1	74	103	13.1022
(.(..((.(((((.....)))))))..))	chr7:766750-767002(-)$1	1	141	170	11.3717
).((((((((((((...))))))))))))	chr14:103576589-103576856(+)$1	1	206	235	10.3581
).((((((((((((...))))))))))))	chr14:103576686-103576903(+)$1	1	109	138	10.5551
.(((((((.((((.....)))).))))..	chr17:80696279-80696532(+)$1	1	48	77	10.9643
(((((.....(((.....)))....))))	chr19:49842836-49843074(-)$1	1	183	212	11.1472
(((((((.((.((.....)).)))))).)	chr14:23991938-23992205(+)$1	1	226	255	12.0522
(((((((((((((.....))))))..)))	chr2:241499977-241500266(-)$1	1	6	35	12.4746
))))((..(((((.....)))))...)))	chr17:40996990-40997257(+)$1	1	131	160	10.6920
(((.((((.((((.....)))).)).)).	chr2:263881-264144(-)$1	1	194	223	10.6023
...((((((((((.....))).)))))))	chr19:577797-578046(+)$1	1	83	112	11.7799

#PSSM
c : 0.22	b : 0.10	d : 0.10	f : 0.08	[ : 0.08	e : 0.06	! : 0.05	g : 0.05	i : 0.03	h : 0.03	E : 0.01	: : 0.01	# : 0.01	C : 0.01	o : 0.01	= : 0.01	a : 0.01	G : 0.01	% : 0.01	
c : 0.17	d : 0.13	[ : 0.08	f : 0.06	: : 0.06	b : 0.06	i : 0.06	g : 0.06	a : 0.05	= : 0.03	! : 0.03	" : 0.03	e : 0.03	E : 0.01	h : 0.01	# : 0.01	% : 0.01	
c : 0.17	d : 0.12	= : 0.10	[ : 0.08	g : 0.08	f : 0.06	i : 0.06	e : 0.05	b : 0.05	: : 0.05	! : 0.03	" : 0.03	h : 0.01	# : 0.01	a : 0.01	% : 0.01	
d : 0.15	= : 0.12	c : 0.10	g : 0.10	f : 0.08	e : 0.08	b : 0.06	[ : 0.06	i : 0.06	! : 0.05	" : 0.05	h : 0.01	# : 0.01	
d : 0.13	b : 0.12	= : 0.12	g : 0.10	f : 0.08	[ : 0.08	e : 0.06	c : 0.05	" : 0.05	! : 0.05	i : 0.05	a : 0.03	h : 0.01	# : 0.01	
= : 0.12	f : 0.10	d : 0.10	b : 0.10	e : 0.08	g : 0.08	! : 0.08	c : 0.06	[ : 0.06	" : 0.05	i : 0.05	a : 0.03	h : 0.01	$ : 0.01	
g : 0.13	= : 0.12	! : 0.12	d : 0.10	e : 0.08	f : 0.08	c : 0.06	b : 0.06	" : 0.05	i : 0.05	[ : 0.03	a : 0.01	] : 0.01	h : 0.01	$ : 0.01	
f : 0.15	[ : 0.13	c : 0.12	= : 0.12	g : 0.12	b : 0.06	e : 0.06	d : 0.06	i : 0.05	! : 0.05	" : 0.01	$ : 0.01	
f : 0.15	c : 0.13	e : 0.13	b : 0.12	= : 0.12	g : 0.10	[ : 0.06	" : 0.03	! : 0.03	d : 0.03	i : 0.03	$ : 0.01	
c : 0.13	e : 0.13	= : 0.12	f : 0.12	b : 0.10	d : 0.08	g : 0.08	! : 0.06	[ : 0.05	" : 0.03	i : 0.03	$ : 0.01	
c : 0.24	[ : 0.18	= : 0.10	e : 0.10	f : 0.10	d : 0.06	g : 0.06	! : 0.05	" : 0.03	b : 0.03	
b : 0.27	c : 0.18	= : 0.10	e : 0.10	f : 0.08	d : 0.06	g : 0.06	a : 0.03	[ : 0.03	" : 0.01	! : 0.01	
b : 0.25	c : 0.18	= : 0.10	e : 0.10	f : 0.08	d : 0.06	a : 0.06	g : 0.06	o : 0.05	
n : 0.81	o : 0.10	= : 0.05	l : 0.01	c : 0.01	
n : 0.81	o : 0.10	l : 0.08	
n : 0.81	o : 0.10	l : 0.08	
n : 0.81	o : 0.10	l : 0.06	c : 0.01	
n : 0.81	o : 0.10	= : 0.05	c : 0.03	
b : 0.24	c : 0.18	e : 0.10	a : 0.10	= : 0.08	f : 0.08	d : 0.06	g : 0.06	o : 0.05	
b : 0.27	c : 0.17	e : 0.12	= : 0.10	f : 0.08	d : 0.06	g : 0.06	] : 0.05	3 : 0.03	2 : 0.01	
c : 0.17	] : 0.15	e : 0.13	= : 0.12	f : 0.10	d : 0.06	3 : 0.06	g : 0.06	b : 0.05	2 : 0.05	
e : 0.15	b : 0.12	= : 0.12	f : 0.12	] : 0.08	c : 0.06	d : 0.06	3 : 0.06	g : 0.06	2 : 0.06	4 : 0.03	i : 0.01	
e : 0.17	f : 0.15	b : 0.12	= : 0.12	c : 0.10	g : 0.10	2 : 0.05	] : 0.05	3 : 0.03	i : 0.03	4 : 0.03	d : 0.01	
f : 0.18	= : 0.12	g : 0.10	c : 0.08	2 : 0.08	e : 0.08	d : 0.08	] : 0.06	b : 0.06	i : 0.03	3 : 0.03	4 : 0.03	
= : 0.12	2 : 0.12	f : 0.10	g : 0.10	] : 0.08	e : 0.08	c : 0.08	d : 0.08	b : 0.06	i : 0.05	3 : 0.03	4 : 0.03	a : 0.01	
= : 0.12	] : 0.12	f : 0.10	c : 0.10	d : 0.10	e : 0.08	2 : 0.08	a : 0.05	g : 0.05	b : 0.05	i : 0.05	3 : 0.05	4 : 0.01	
d : 0.15	c : 0.12	= : 0.12	b : 0.12	f : 0.08	g : 0.08	e : 0.06	] : 0.05	i : 0.05	2 : 0.05	a : 0.03	4 : 0.01	[ : 0.01	3 : 0.01	
b : 0.13	c : 0.13	= : 0.12	f : 0.08	d : 0.08	g : 0.08	] : 0.06	e : 0.05	i : 0.05	3 : 0.05	4 : 0.03	2 : 0.03	h : 0.01	F : 0.01	a : 0.01	
c : 0.15	= : 0.12	d : 0.10	b : 0.08	g : 0.08	] : 0.06	f : 0.05	i : 0.05	3 : 0.05	e : 0.03	2 : 0.03	4 : 0.03	a : 0.03	: : 0.03	h : 0.01	F : 0.01	D : 0.01	

#score	673.8059664399154
#seq	58
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_transcript_m1_run1.txt

#BEAR
=========="""ddddmmmmdddd55555==========	chr1:39470000-39470222(+)$1	222	53	93	15.3511
ggg[ccc[ccc"""bboooooobb333cccccc]gggggg	chr2:43450286-43450545(-)$1	259	96	136	16.6988
###iiiiiiiii[cccooooooccc22iiiiiiiii333b	chr12:66359841-66360080(+)$1	239	179	219	20.1924
c!!ccc==========oooooo==========22ccc22c	chr8:59495148-59495397(+)$1	249	39	79	18.7521
!!dddd[ccc"""cccnnnnnccc333ccc]dddd]iiii	chr1:150190754-150191019(-)$1	265	167	207	13.8204
========[bb"""bboooooobb333bb]==========	chr6:146120870-146121213(-)$1	343	221	261	20.3132
eee[ggggggg!!cccooooooccc4444ggggggg]eee	chr1:225589839-225590068(-)$1	229	38	78	18.0639
d[bb[ggggggg[cccrrrrrrrrrccc]ggggggg]bb]	chr17:66527140-66527395(+)$1	255	154	194	14.6784
====="""bb"""bbrrrrrrrrrbb333bb4444=====	chr10:124817378-124817651(+)$1	273	141	181	17.1971
ffff[dddd####cccooooooccc333dddd]fffffff	chr15:73852463-73852703(-)$1	240	87	127	14.8432
$$$===========qqqqqqqq===========iiiiiii	chr14:21927589-21927886(-)$1	297	128	168	16.7919
iiiiiiii!!ccc!!cccmmmmccc22ccciiiiiiiii4	chr3:15483516-15483778(+)$1	262	139	179	16.0823
ggg"""==========qqqqqqqq==========gggggg	chr1:185088088-185088406(-)$1	318	248	288	16.6036
===========^^^^^^^^^^^^^^^^^^===========	chrX:119572341-119572679(-)$1	338	192	232	18.3392
dccc"""iiiiiiiiiooooooiiiiiiiii]ccc>>>>>	chr7:32526580-32526910(-)$1	330	203	243	16.3563
========[bb[ddddnnnnndddd]bb]===========	chr12:124138590-124138858(+)$1	268	221	261	16.4051
=========="""cccooooooccc4444==========]	chr8:129053823-129054094(+)$1	271	134	174	23.8112
gggg[dddd[ffffffooooooffffff]ddddggggggg	chrX:131505946-131506194(-)$1	248	28	68	13.8372
##iiiiiiiii^^^^^^^^^^^^^^^^^^iiiiiiiii44	chr7:45932793-45933000(+)$1	207	58	98	16.8288
=========####bb[ccclllccc]bb4444========	chr3:32522801-32523056(-)$1	255	52	92	18.0425
:iiiiiiiii[eeeeeooooooeeeee]iiiiiiiii:::	chr1:94353827-94354088(-)$1	261	71	111	14.3833
bb####==========oooooo==========bb]a]ddd	chr6:64291107-64291333(+)$1	226	61	101	18.2296
##iiiiiiiii^^^^^^^^^^^^^^^^^^iiiiiiiii44	chr7:45932757-45932963(+)$1	206	94	134	16.8288
ff[ccc===========mmmm===========4444ccc]	chr16:54317185-54317464(-)$1	279	133	173	16.0071
=========="""cccmmmmccc==========:::iiii	chr16:70284048-70284318(-)$1	270	126	166	15.0485
"ggggggg!!dddd[aooooooa]dddd]ggggggg4444	chr12:65640843-65641102(+)$1	259	109	149	16.4524
cc!!eeeee[ccccccooooooccc22ccc]eeeee333c	chr21:18941427-18941676(+)$1	249	65	105	15.0866
=========="""cccooooooccc4444===========	chr3:119150568-119150817(-)$1	249	163	203	23.8836
dd"""bb"""ffffffooooooffffff333bb333dddd	chr10:102124424-102124670(+)$1	246	112	152	14.0967
===========eeeeeooooooeeeee>>>>>>>>>>>>>	chr15:66783505-66783755(+)$1	250	143	183	15.1590
bccc[ccc[gggggggrrrrrrrrrggggggg]cccccc]	chr2:101893439-101893722(-)$1	283	59	99	13.8143
gggggggiiiiiiiiiooooooiiiiiiiii4444ggggg	chr10:98719401-98719708(+)$1	307	238	278	18.1182
####==============mmmm==============22dd	chr11:130096654-130097030(-)$1	376	254	294	17.6242
dd"""ccc!!ffffffooooooffffff22ccc333dddd	chr4:17626817-17627041(+)$1	224	36	76	14.0977
!!ggggggg####ddddooooooddddggggggg]ddddb	chr2:61150208-61150459(+)$1	251	179	219	15.1232
=====[dddd!!ccc[annnnna]ccc22dddd]======	chr6:170107064-170107331(-)$1	267	42	82	14.9975
gggg:=============rrrrrrrrr=============	chr15:25236190-25236420(+)$1	230	102	142	17.1339
===========eeeeeooooooeeeee>>>>>>>>>>>>>	chr15:66783563-66783850(+)$1	287	85	125	15.1590
!!ccc"""gggggggwwwwwwwwwwwwwwggggggg4444	chr2:111924610-111924857(+)$1	247	39	79	13.8855
=========!!eeeeeooooooeeeee4444=========	chr11:65194220-65194422(+)$1	202	121	161	20.5213
+iiiiiiiii[ccc[cccmmmmccc]ccciiiiiiiii22	chr2:43450235-43450454(-)$1	219	69	109	15.5280
iiiiiiiii"""cccqqqqqqqqccc333iiiiiiiiicc	chr16:11844493-11844748(-)$1	255	191	231	17.5453
========!!ffffffnnnnnffffff333==========	chr5:126172362-126172616(+)$1	254	191	231	17.2765
biiiiiiiii"""bbrrrrrrrrrbb333iiiiiiiii]b	chr2:65537987-65538234(-)$1	247	89	129	18.6527
=================mmmm=================::	chr6:132269594-132269802(-)$1	208	0	40	17.4336
========####ddddoooooodddd4444==========	chr16:72818642-72818861(-)$1	219	60	100	21.3700
##iiiiiiiii^^^^^^^^^^^^^^^^^^iiiiiiiii44	chr7:45932764-45932981(+)$1	217	87	127	16.8288
================ppppppp=================	chr20:45885888-45886228(-)$1	340	146	186	17.9453
=====[ccc"""ddddoooooodddd333ccc========	chr8:26268626-26268883(+)$1	257	108	148	19.9979

#otherMatches

#Seq PSSM
AgugcgugugagaguguguguauauguguguauguguauU	chr1:39470000-39470222(+)$1	222	53	93	15.3511
UAAUAUAUGCCUUUUGUAACUUCACUUGGUUAUUUUAUUG	chr2:43450286-43450545(-)$1	259	96	136	16.6988
GCUCUUUGUUACAGUUCCAUUAAAUGAGUAAUAAAGUUUG	chr12:66359841-66360080(+)$1	239	179	219	20.1924
AUUUGUGGAUUAAGUGGUAUAAUACUUAAUUUUGGCAUUU	chr8:59495148-59495397(+)$1	249	39	79	18.7521
ACAAAAAAAUUUGCAGUACUCCUGAUUAUUCUUUUAUUGU	chr1:150190754-150191019(-)$1	265	167	207	13.8204
AGAAUUAGUAUUUUCAGUGGUGUGCAUAUUUUGGUUCUUA	chr6:146120870-146121213(-)$1	343	221	261	20.3132
UGUUUGAAAAUUUGCCAUUUCAGGCUAAUAUUUUUAUAUA	chr1:225589839-225590068(-)$1	229	38	78	18.0639
UUGAAACUAACUCAUAGAUUGCAAAUAUUGGUUAGUAUUU	chr17:66527140-66527395(+)$1	255	154	194	14.6784
GUGUCAUCGCUUAUGUAUAUGAAUCACUUGCCAAAGACAC	chr10:124817378-124817651(+)$1	273	141	181	17.1971
UAAUUUUUCUUUUGUUUCCAAUGACCUUGAAAUGUUAUAG	chr15:73852463-73852703(-)$1	240	87	127	14.8432
GUUUUUGUGUGGAAUCUUGUCUUUCCGUAUAAGUUGUAAG	chr14:21927589-21927886(-)$1	297	128	168	16.7919
UAGGAAAACUUGAAAAUUCCAAAAUCCUUAUUUUCCUAUU	chr3:15483516-15483778(+)$1	262	139	179	16.0823
UCUCACUUCAUUUGAAUAUAAGAUUUUGGAUGAAAGGAUU	chr1:185088088-185088406(-)$1	318	248	288	16.6036
AUAUAAUAGUAGAUUUGAACAGGGGCUGGUAUUAUUAUGU	chrX:119572341-119572679(-)$1	338	192	232	18.3392
CCUGGAAAAAGAAGAAAAGAGCUUCUUCUUUGCAGAUGAA	chr7:32526580-32526910(-)$1	330	203	243	16.3563
GGGUGUAUUUUGGGGGGUAUGUUUUGGAUGUGUAUUUUUU	chr12:124138590-124138858(+)$1	268	221	261	16.4051
guguuuaguauguguguguuuguAUUGGUUGCUGAGCACU	chr8:129053823-129054094(+)$1	271	134	174	23.8112
GCAGACGCUUUGAUUUUUUUUCAAGUUAUAGUGCUGUAGU	chrX:131505946-131506194(-)$1	248	28	68	13.8372
ACUGUAAGUUUAUUUUUUCUACACAGUAAAAACUUGUACU	chr7:45932793-45933000(+)$1	207	58	98	16.8288
AUUAUAAGAGAAAUGAACUCACAGUACAAAAAUUUUAUAA	chr3:32522801-32523056(-)$1	255	52	92	18.0425
AAUACAUGAAUGGAAACUUAAAUUUUUUUUUAUGUGUCCU	chr1:94353827-94354088(-)$1	261	71	111	14.3833
ACAAUUUGUUUUAUUAUGUAAUUGAUAAAAUGGUGAUGUG	chr6:64291107-64291333(+)$1	226	61	101	18.2296
ACUGUAAGUUUAUUUUUUCUACACAGUAAAAACUUGUACU	chr7:45932757-45932963(+)$1	206	94	134	16.8288
GUCUGCCUUUGUGUGUGUGUAUAUAUACAGAGAAAUGUAC	chr16:54317185-54317464(-)$1	279	133	173	16.0071
cggcccuggauaaugcuguagcauucagggucgauugagu	chr16:70284048-70284318(-)$1	270	126	166	15.0485
GUAUGAUUUUGUGUGAAAGUUCUGAUACCAGUUGUAAUAG	chr12:65640843-65641102(+)$1	259	109	149	16.4524
UUAUGUGAAUGUUGAGUUUUUUCUUCUAAUUUUCACUUCA	chr21:18941427-18941676(+)$1	249	65	105	15.0866
UUUCAUGUGUUAGUAUAUUCGAAUAAUAUACAUAUGAGAG	chr3:119150568-119150817(-)$1	249	163	203	23.8836
CUAAUCUGAGAUUGUGUUUGUUCAUAAUAAAAGUGAAGUG	chr10:102124424-102124670(+)$1	246	112	152	14.0967
UUUUGAUUAAUGUUUCUUAAAUGGAAUUAUUUUGAAUGUC	chr15:66783505-66783755(+)$1	250	143	183	15.1590
GGCUUGAACUAAAGGACAUUUUAUUUUUUUUACUUUAGCA	chr2:101893439-101893722(-)$1	283	59	99	13.8143
GUGAAGUGUGUAUUAGCUUUAUUUGGUACACUUUUACUUU	chr10:98719401-98719708(+)$1	307	238	278	18.1182
AAUCUUUUUAAAAAAGGUUUAAACUUUUUUUAAAAAAAAA	chr11:130096654-130097030(-)$1	376	254	294	17.6242
GACAUUAUUCUCCUUAAAUAUAUAAGGACCAUAUAAUCUG	chr4:17626817-17627041(+)$1	224	36	76	14.0977
AAUGUCUUUAAAAUGUUAAGUUGGGCAGAAGGCAGUUGAA	chr2:61150208-61150459(+)$1	251	179	219	15.1232
ACAUACAGGAGAUUAGUUUAAUAGUAAAGUUUUAUAUGUA	chr6:170107064-170107331(-)$1	267	42	82	14.9975
CGAGUUUGUUUAAAUAUGUGGGAAAAUUAUGUUUAGAUAA	chr15:25236190-25236420(+)$1	230	102	142	17.1339
UUUUGAUUAAUGUUUCUUAAAUGGAAUUAUUUUGAAUGUC	chr15:66783563-66783850(+)$1	287	85	125	15.1590
UGUAACUUGUAGAAAUAUUGUAUAUUUAUUUUCUGCUUAU	chr2:111924610-111924857(+)$1	247	39	79	13.8855
UUUUUGUUUGGUUAGGGGAAAGCCUGAAUAAAAACAGAAA	chr11:65194220-65194422(+)$1	202	121	161	20.5213
UAAGAGAUUGUAUGUAAUAUUUAUUUCAUUAAUUUCUUUC	chr2:43450235-43450454(-)$1	219	69	109	15.5280
UGGUCUUUUGCUGUUUAAAUGAUGAUUUUGAAAGAUUAAA	chr16:11844493-11844748(-)$1	255	191	231	17.5453
UUCUCUUAGAUUCUUAAUUCAUGAGGAGGGUGGGGGAGGG	chr5:126172362-126172616(+)$1	254	191	231	17.2765
UUUUUUUAUAAUAAGCCUUUUUACCUCUGUGUAAAAAAUA	chr2:65537987-65538234(-)$1	247	89	129	18.6527
guguguguguguguguguguauauauauauauauGUACAG	chr6:132269594-132269802(-)$1	208	0	40	17.4336
AUUUUAUUUUUAUGAAUUUGUUUUUAGUUUAAUGAAAUAG	chr16:72818642-72818861(-)$1	219	60	100	21.3700
ACUGUAAGUUUAUUUUUUCUACACAGUAAAAACUUGUACU	chr7:45932764-45932981(+)$1	217	87	127	16.8288
guauguguauuuguguauauggcauaugaguauauguaua	chr20:45885888-45886228(-)$1	340	146	186	17.9453
GUGUGUGUUUGAUAUUUUUUACGAUAAUUAGCUGCAUGUG	chr8:26268626-26268883(+)$1	257	108	148	19.9979

#DB
((((((((((...((((....)))).....))))))))))	chr1:39470000-39470222(+)$1	1	53	93	15.3511
(((.(((.(((...((......))...)))))).))))))	chr2:43450286-43450545(-)$1	1	96	136	16.6988
...(((((((((.(((......)))..)))))))))...)	chr12:66359841-66360080(+)$1	1	179	219	20.1924
(..(((((((((((((......))))))))))..)))..)	chr8:59495148-59495397(+)$1	1	39	79	18.7521
..((((.(((...(((.....)))...))).)))).))))	chr1:150190754-150191019(-)$1	1	167	207	13.8204
((((((((.((...((......))...)).))))))))))	chr6:146120870-146121213(-)$1	1	221	261	20.3132
(((.(((((((..(((......)))....))))))).)))	chr1:225589839-225590068(-)$1	1	38	78	18.0639
(.((.(((((((.(((.........))).))))))).)).	chr17:66527140-66527395(+)$1	1	154	194	14.6784
(((((...((...((.........))...))....)))))	chr10:124817378-124817651(+)$1	1	141	181	17.1971
((((.((((....(((......)))...)))).))))))(	chr15:73852463-73852703(-)$1	1	87	127	14.8432
...(((((((((((........))))))))))))))))))	chr14:21927589-21927886(-)$1	1	128	168	16.7919
((((((((..(((..(((....)))..)))))))))))).	chr3:15483516-15483778(+)$1	1	139	179	16.0823
(((...((((((((((........))))))))))))))))	chr1:185088088-185088406(-)$1	1	248	288	16.6036
(((((((((((..................)))))))))))	chrX:119572341-119572679(-)$1	1	192	232	18.3392
((((...(((((((((......))))))))).))).....	chr7:32526580-32526910(-)$1	1	203	243	16.3563
((((((((.((.((((.....)))).)).)))))))))))	chr12:124138590-124138858(+)$1	1	221	261	16.4051
((((((((((...(((......)))....)))))))))).	chr8:129053823-129054094(+)$1	1	134	174	23.8112
((((.((((.((((((......)))))).)))))))))))	chrX:131505946-131506194(-)$1	1	28	68	13.8372
..(((((((((..................)))))))))..	chr7:45932793-45933000(+)$1	1	58	98	16.8288
(((((((((....((.(((...))).))....))))))))	chr3:32522801-32523056(-)$1	1	52	92	18.0425
.(((((((((.(((((......))))).)))))))))...	chr1:94353827-94354088(-)$1	1	71	111	14.3833
((....((((((((((......)))))))))))).).)))	chr6:64291107-64291333(+)$1	1	61	101	18.2296
..(((((((((..................)))))))))..	chr7:45932757-45932963(+)$1	1	94	134	16.8288
((.((((((((((((((....)))))))))))....))).	chr16:54317185-54317464(-)$1	1	133	173	16.0071
((((((((((...(((....)))))))))))))...((((	chr16:70284048-70284318(-)$1	1	126	166	15.0485
.(((((((..((((.(......).)))).)))))))....	chr12:65640843-65641102(+)$1	1	109	149	16.4524
((..(((((.((((((......)))..))).)))))...)	chr21:18941427-18941676(+)$1	1	65	105	15.0866
((((((((((...(((......)))....)))))))))))	chr3:119150568-119150817(-)$1	1	163	203	23.8836
((...((...((((((......))))))...))...))))	chr10:102124424-102124670(+)$1	1	112	152	14.0967
((((((((((((((((......))))).............	chr15:66783505-66783755(+)$1	1	143	183	15.1590
((((.(((.(((((((.........))))))).)))))).	chr2:101893439-101893722(-)$1	1	59	99	13.8143
((((((((((((((((......)))))))))....)))))	chr10:98719401-98719708(+)$1	1	238	278	18.1182
....((((((((((((((....))))))))))))))..))	chr11:130096654-130097030(-)$1	1	254	294	17.6242
((...(((..((((((......))))))..)))...))))	chr4:17626817-17627041(+)$1	1	36	76	14.0977
..(((((((....((((......))))))))))).))))(	chr2:61150208-61150459(+)$1	1	179	219	15.1232
(((((.((((..(((.(.....).)))..)))).))))))	chr6:170107064-170107331(-)$1	1	42	82	14.9975
)))).(((((((((((((.........)))))))))))))	chr15:25236190-25236420(+)$1	1	102	142	17.1339
((((((((((((((((......))))).............	chr15:66783563-66783850(+)$1	1	85	125	15.1590
..(((...(((((((..............)))))))....	chr2:111924610-111924857(+)$1	1	39	79	13.8855
(((((((((..(((((......)))))....)))))))))	chr11:65194220-65194422(+)$1	1	121	161	20.5213
.(((((((((.(((.(((....))).))))))))))))..	chr2:43450235-43450454(-)$1	1	69	109	15.5280
(((((((((...(((........)))...)))))))))((	chr16:11844493-11844748(-)$1	1	191	231	17.5453
((((((((..((((((.....))))))...))))))))))	chr5:126172362-126172616(+)$1	1	191	231	17.2765
((((((((((...((.........))...))))))))).)	chr2:65537987-65538234(-)$1	1	89	129	18.6527
(((((((((((((((((....)))))))))))))))))..	chr6:132269594-132269802(-)$1	1	0	40	17.4336
((((((((....((((......))))....))))))))))	chr16:72818642-72818861(-)$1	1	60	100	21.3700
..(((((((((..................)))))))))..	chr7:45932764-45932981(+)$1	1	87	127	16.8288
((((((((((((((((.......)))))))))))))))))	chr20:45885888-45886228(-)$1	1	146	186	17.9453
(((((.(((...((((......))))...)))))))))))	chr8:26268626-26268883(+)$1	1	108	148	19.9979

#PSSM
= : 0.36	g : 0.10	# : 0.10	d : 0.08	! : 0.06	b : 0.06	c : 0.04	f : 0.04	i : 0.04	e : 0.02	$ : 0.02	: : 0.02	" : 0.02	+ : 0.02	
= : 0.36	g : 0.12	# : 0.10	i : 0.10	! : 0.08	c : 0.06	f : 0.04	d : 0.04	e : 0.02	[ : 0.02	$ : 0.02	b : 0.02	
= : 0.36	i : 0.16	g : 0.14	# : 0.06	c : 0.06	! : 0.04	" : 0.04	d : 0.02	e : 0.02	b : 0.02	f : 0.02	$ : 0.02	[ : 0.02	
= : 0.38	i : 0.18	c : 0.10	g : 0.10	" : 0.06	[ : 0.04	# : 0.04	d : 0.02	b : 0.02	f : 0.02	! : 0.02	
= : 0.40	i : 0.18	c : 0.08	g : 0.08	[ : 0.08	" : 0.08	d : 0.02	# : 0.02	e : 0.02	: : 0.02	
= : 0.36	i : 0.18	c : 0.10	g : 0.10	" : 0.08	d : 0.06	[ : 0.04	# : 0.02	e : 0.02	b : 0.02	
= : 0.44	i : 0.18	g : 0.10	c : 0.08	" : 0.06	d : 0.06	[ : 0.02	e : 0.02	b : 0.02	
= : 0.44	i : 0.22	c : 0.08	g : 0.08	" : 0.06	d : 0.06	[ : 0.02	e : 0.02	
= : 0.36	i : 0.20	g : 0.08	! : 0.08	c : 0.06	[ : 0.06	d : 0.06	b : 0.02	e : 0.02	" : 0.02	# : 0.02	
= : 0.32	i : 0.18	! : 0.10	g : 0.08	# : 0.08	b : 0.06	" : 0.06	c : 0.04	[ : 0.04	d : 0.02	
= : 0.24	" : 0.18	i : 0.12	g : 0.08	# : 0.08	f : 0.08	c : 0.06	b : 0.04	[ : 0.04	! : 0.04	d : 0.02	
" : 0.22	= : 0.18	# : 0.08	^ : 0.08	f : 0.08	e : 0.08	i : 0.06	g : 0.06	c : 0.06	! : 0.04	[ : 0.02	d : 0.02	
" : 0.18	= : 0.18	c : 0.10	^ : 0.08	d : 0.08	f : 0.08	e : 0.08	# : 0.06	[ : 0.04	i : 0.04	g : 0.04	! : 0.02	
c : 0.24	= : 0.18	d : 0.12	^ : 0.08	f : 0.08	e : 0.08	b : 0.06	" : 0.04	i : 0.04	g : 0.04	! : 0.02	
c : 0.22	= : 0.16	d : 0.10	b : 0.10	^ : 0.08	f : 0.08	e : 0.08	i : 0.04	[ : 0.04	g : 0.04	q : 0.02	! : 0.02	
c : 0.22	= : 0.16	d : 0.10	^ : 0.08	f : 0.08	e : 0.08	b : 0.04	r : 0.04	q : 0.04	i : 0.04	[ : 0.04	a : 0.02	g : 0.02	w : 0.02	
o : 0.44	r : 0.08	^ : 0.08	= : 0.08	n : 0.06	q : 0.06	c : 0.06	d : 0.04	m : 0.02	a : 0.02	w : 0.02	p : 0.02	
o : 0.46	m : 0.08	n : 0.08	r : 0.08	^ : 0.08	q : 0.06	c : 0.06	= : 0.04	w : 0.02	p : 0.02	
o : 0.46	m : 0.14	r : 0.10	n : 0.08	^ : 0.08	q : 0.06	c : 0.02	w : 0.02	p : 0.02	
o : 0.46	m : 0.14	r : 0.10	n : 0.08	^ : 0.08	q : 0.06	l : 0.02	w : 0.02	p : 0.02	
o : 0.46	m : 0.12	r : 0.10	n : 0.08	^ : 0.08	q : 0.06	l : 0.02	c : 0.02	w : 0.02	p : 0.02	
o : 0.46	r : 0.10	^ : 0.08	q : 0.06	m : 0.06	d : 0.04	c : 0.04	= : 0.04	l : 0.02	n : 0.02	w : 0.02	f : 0.02	p : 0.02	
c : 0.22	= : 0.12	r : 0.10	d : 0.08	^ : 0.08	f : 0.08	e : 0.08	b : 0.04	q : 0.04	i : 0.04	a : 0.04	o : 0.02	w : 0.02	p : 0.02	
c : 0.22	= : 0.16	d : 0.10	r : 0.10	^ : 0.08	f : 0.08	e : 0.08	b : 0.04	i : 0.04	] : 0.04	q : 0.02	w : 0.02	
c : 0.22	= : 0.18	d : 0.12	^ : 0.08	f : 0.08	e : 0.08	3 : 0.06	r : 0.06	b : 0.04	i : 0.04	w : 0.02	
= : 0.18	3 : 0.08	^ : 0.08	f : 0.08	e : 0.08	d : 0.08	2 : 0.06	4 : 0.06	c : 0.06	] : 0.06	b : 0.04	i : 0.04	5 : 0.02	g : 0.02	r : 0.02	w : 0.02	
= : 0.18	3 : 0.16	4 : 0.08	^ : 0.08	f : 0.08	e : 0.08	2 : 0.06	c : 0.06	i : 0.04	b : 0.04	d : 0.04	5 : 0.02	g : 0.02	r : 0.02	w : 0.02	
= : 0.20	c : 0.12	3 : 0.12	4 : 0.10	^ : 0.08	i : 0.06	b : 0.06	f : 0.06	> : 0.04	g : 0.04	5 : 0.02	] : 0.02	d : 0.02	2 : 0.02	w : 0.02	
= : 0.20	4 : 0.12	3 : 0.12	c : 0.10	i : 0.08	] : 0.08	^ : 0.08	> : 0.04	g : 0.04	2 : 0.04	5 : 0.02	b : 0.02	d : 0.02	w : 0.02	
= : 0.28	i : 0.20	g : 0.12	c : 0.10	d : 0.06	4 : 0.06	3 : 0.04	> : 0.04	5 : 0.02	] : 0.02	b : 0.02	2 : 0.02	
= : 0.36	i : 0.22	g : 0.12	c : 0.06	d : 0.06	] : 0.04	4 : 0.04	> : 0.04	b : 0.02	3 : 0.02	
= : 0.38	i : 0.18	g : 0.12	d : 0.08	c : 0.06	4 : 0.06	> : 0.04	] : 0.02	e : 0.02	b : 0.02	
= : 0.36	i : 0.18	g : 0.10	c : 0.06	d : 0.06	4 : 0.06	] : 0.04	b : 0.04	> : 0.04	2 : 0.02	e : 0.02	
= : 0.32	i : 0.20	g : 0.12	4 : 0.06	] : 0.04	c : 0.04	3 : 0.04	> : 0.04	2 : 0.02	d : 0.02	f : 0.02	b : 0.02	: : 0.02	e : 0.02	
= : 0.32	i : 0.20	g : 0.14	c : 0.06	4 : 0.06	] : 0.04	3 : 0.04	> : 0.04	d : 0.02	f : 0.02	: : 0.02	e : 0.02	
= : 0.34	i : 0.20	g : 0.16	> : 0.06	c : 0.04	3 : 0.04	] : 0.02	f : 0.02	a : 0.02	4 : 0.02	: : 0.02	e : 0.02	d : 0.02	
= : 0.32	i : 0.22	g : 0.08	c : 0.06	] : 0.06	> : 0.06	d : 0.06	3 : 0.04	4 : 0.04	f : 0.02	2 : 0.02	
= : 0.32	i : 0.20	g : 0.08	d : 0.08	> : 0.06	3 : 0.04	2 : 0.04	c : 0.04	4 : 0.04	e : 0.02	b : 0.02	f : 0.02	: : 0.02	
= : 0.30	4 : 0.10	d : 0.10	g : 0.08	i : 0.08	> : 0.06	c : 0.06	3 : 0.04	2 : 0.04	: : 0.04	e : 0.02	b : 0.02	f : 0.02	] : 0.02	
= : 0.28	4 : 0.12	g : 0.08	] : 0.08	d : 0.08	b : 0.06	c : 0.06	i : 0.06	> : 0.06	: : 0.04	e : 0.02	f : 0.02	2 : 0.02	

#score	831.2400905931269
#seq	49
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_UTR_m1_run1.txt

#BEAR
eeeee[bb[eeeee[bbbbmmmmbb]bb]eeeee]bb]ee	chr2:173472384-173472693(+)$1	309	38	78	12.4163
ggggggg"""cccfffffflllffffff]ccc]ggggggg	chrX:17755994-17756257(+)$1	263	200	240	14.4770
=======[a[cccbb!!bbmmmmbb4444bb]ccc]a===	chr11:71718544-71718837(-)$1	293	170	210	14.4040
iiiiiii####hhhhhhhhmmmmhhhhhhhh4444iiiii	chr8:144678717-144679001(-)$1	284	199	239	13.8874
ddd[==========####ammmma333==========]dd	chr17:75423182-75423438(+)$1	256	169	209	15.6419
ddd[eeeee####ffffffmmmmffffff333eeeee]dd	chr2:20550323-20550588(-)$1	265	32	72	15.5555
g[a"""eeeeebbaeeeeemmmmeeeee]a22bb]eeeee	chr15:67391098-67391418(+)$1	320	153	193	14.0715
c[eeeee[bb[ccc!!cccnnnnnccc22cccbb]eeeee	chr6:47867380-47867682(-)$1	302	145	185	12.0555
eee]ccc:ccc[gggggggmmmmggggggg]cccdddd[c	chr13:111287201-111287577(+)$1	376	209	249	12.5601
bb!!dddd$$$$$ffffffmmmmffffff333dddd22bb	chr6:86352557-86352823(-)$1	266	130	170	12.9622
ddd!!bb[eeeee[eeeeemmmmeeeee]eeeee]bb22d	chr11:18034165-18034427(-)$1	262	32	72	12.9800
ggggggg[bb!!ggggggglllggggggg22bb]gggggg	chr14:73569859-73570141(+)$1	282	21	61	14.2885
fffff"""a!!ccc[ddddllldddd]ccc22a333ffff	chr1:2325752-2326056(+)$1	304	58	98	13.1509

#otherMatches

#Seq PSSM
GUUGUAGCAGAGUCGGUCCUAGGGGAACAGGCUCAGCAGC	chr2:173472384-173472693(+)$1	309	38	78	12.4163
GCGGUUGAGACAUAGAGUCUGAGGCUUUGAUGGUAACCGC	chrX:17755994-17756257(+)$1	263	200	240	14.4770
AGGGGAGUGGACUGAAAGGAAGGCCCAGGUCAAGUGCUUU	chr11:71718544-71718837(-)$1	293	170	210	14.4040
CUUGGGGUUGUCCCUGCCCGACAGGGCGGGGUGCUUCUUA	chr8:144678717-144679001(-)$1	284	199	239	13.8874
GGUGCCCUGGGAGUGACAGGAGACGGGGCUUCUGGGGGAC	chr17:75423182-75423438(+)$1	256	169	209	15.6419
CUCACCCUCGGUACUUCGGUGGUUCggaggaggaggggga	chr2:20550323-20550588(-)$1	265	32	72	15.5555
GGAGGGUCAGGCAGCCCAUGGAGAUGGGACAGUGUUCUGA	chr15:67391098-67391418(+)$1	320	153	193	14.0715
ggguuaggggaugaagccagggaauggagucacugcuaau	chr6:47867380-47867682(-)$1	302	145	185	12.0555
ugauggcaucagcuucacgggguugugaggaugagaugag	chr13:111287201-111287577(+)$1	376	209	249	12.5601
CGCACCGGGAGCGCGCUCGGAGGCGAGUGGAACUGGAUCG	chr6:86352557-86352823(-)$1	266	130	170	12.9622
CCGAGCCGGGCUCUGGGUUGAAGGAUCCUGGGCUgggagc	chr11:18034165-18034427(-)$1	262	32	72	12.9800
UGCUUUUAUUGGUUUCUAGAAACUGgaagaagagaaaggc	chr14:73569859-73570141(+)$1	282	21	61	14.2885
AGGCACUUGAGGGCGGGAUUGCGUCUGGCCACCUGUUGCC	chr1:2325752-2326056(+)$1	304	58	98	13.1509

#DB
(((((.((.(((((.((((....)).)).))))).)).))	chr2:173472384-173472693(+)$1	1	38	78	12.4163
(((((((...(((((((((...)))))).))).)))))))	chrX:17755994-17756257(+)$1	1	200	240	14.4770
(((((((.(.(((((..((....))....)).))).))))	chr11:71718544-71718837(-)$1	1	170	210	14.4040
(((((((....((((((((....))))))))....)))))	chr8:144678717-144679001(-)$1	1	199	239	13.8874
(((.((((((((((....(....)...)))))))))).))	chr17:75423182-75423438(+)$1	1	169	209	15.6419
(((.(((((....((((((....))))))...))))).))	chr2:20550323-20550588(-)$1	1	32	72	15.5555
(.(...(((((((((((((....))))).)..)).)))))	chr15:67391098-67391418(+)$1	1	153	193	14.0715
(.(((((.((.(((..(((.....)))..))))).)))))	chr6:47867380-47867682(-)$1	1	145	185	12.0555
))).))).(((.(((((((....))))))).)))((((.(	chr13:111287201-111287577(+)$1	1	209	249	12.5601
((..((((.....((((((....))))))...))))..))	chr6:86352557-86352823(-)$1	1	130	170	12.9622
(((..((.(((((.(((((....))))).))))).))..)	chr11:18034165-18034427(-)$1	1	32	72	12.9800
(((((((.((..(((((((...)))))))..)).))))))	chr14:73569859-73570141(+)$1	1	21	61	14.2885
(((((...(..(((.((((...)))).)))..)...))))	chr1:2325752-2326056(+)$1	1	58	98	13.1509

#PSSM
g : 0.23	d : 0.23	e : 0.15	= : 0.07	i : 0.07	c : 0.07	b : 0.07	f : 0.07	
d : 0.23	e : 0.15	g : 0.15	[ : 0.15	= : 0.07	i : 0.07	b : 0.07	f : 0.07	
e : 0.23	d : 0.23	g : 0.15	= : 0.07	i : 0.07	a : 0.07	! : 0.07	f : 0.07	
e : 0.15	g : 0.15	[ : 0.15	! : 0.15	= : 0.07	i : 0.07	" : 0.07	] : 0.07	f : 0.07	
e : 0.23	g : 0.15	= : 0.15	i : 0.07	" : 0.07	c : 0.07	d : 0.07	! : 0.07	f : 0.07	
g : 0.15	= : 0.15	e : 0.15	" : 0.15	[ : 0.07	i : 0.07	c : 0.07	d : 0.07	b : 0.07	
e : 0.23	b : 0.15	g : 0.15	= : 0.15	i : 0.07	c : 0.07	d : 0.07	" : 0.07	
[ : 0.30	" : 0.15	e : 0.15	b : 0.07	# : 0.07	= : 0.07	: : 0.07	d : 0.07	
e : 0.23	a : 0.15	b : 0.15	[ : 0.07	" : 0.07	# : 0.07	= : 0.07	c : 0.07	$ : 0.07	
e : 0.23	# : 0.15	b : 0.15	" : 0.07	[ : 0.07	= : 0.07	c : 0.07	$ : 0.07	! : 0.07	
e : 0.23	c : 0.23	# : 0.15	! : 0.15	= : 0.07	[ : 0.07	$ : 0.07	
c : 0.30	e : 0.15	h : 0.07	= : 0.07	# : 0.07	b : 0.07	[ : 0.07	$ : 0.07	! : 0.07	
c : 0.30	e : 0.15	g : 0.15	h : 0.07	= : 0.07	# : 0.07	b : 0.07	$ : 0.07	
f : 0.23	c : 0.15	g : 0.15	e : 0.07	b : 0.07	h : 0.07	= : 0.07	a : 0.07	[ : 0.07	
f : 0.23	[ : 0.15	e : 0.15	g : 0.15	b : 0.07	h : 0.07	# : 0.07	! : 0.07	
f : 0.23	! : 0.15	e : 0.15	g : 0.15	b : 0.07	h : 0.07	# : 0.07	d : 0.07	
f : 0.23	e : 0.15	g : 0.15	b : 0.07	! : 0.07	h : 0.07	# : 0.07	c : 0.07	d : 0.07	
f : 0.23	b : 0.15	e : 0.15	g : 0.15	h : 0.07	# : 0.07	c : 0.07	d : 0.07	
f : 0.23	b : 0.15	e : 0.15	g : 0.15	h : 0.07	a : 0.07	c : 0.07	d : 0.07	
m : 0.69	l : 0.23	n : 0.07	
m : 0.69	l : 0.23	n : 0.07	
m : 0.69	l : 0.23	n : 0.07	
m : 0.69	f : 0.07	n : 0.07	g : 0.07	d : 0.07	
f : 0.23	b : 0.15	e : 0.15	g : 0.15	h : 0.07	a : 0.07	n : 0.07	d : 0.07	
f : 0.23	b : 0.15	e : 0.15	g : 0.15	h : 0.07	3 : 0.07	c : 0.07	d : 0.07	
f : 0.23	e : 0.15	g : 0.15	] : 0.07	4 : 0.07	h : 0.07	3 : 0.07	c : 0.07	d : 0.07	
f : 0.23	e : 0.15	g : 0.15	b : 0.07	4 : 0.07	h : 0.07	3 : 0.07	c : 0.07	] : 0.07	
f : 0.23	e : 0.15	g : 0.15	b : 0.07	4 : 0.07	h : 0.07	= : 0.07	2 : 0.07	c : 0.07	
] : 0.30	f : 0.15	g : 0.15	4 : 0.07	h : 0.07	= : 0.07	2 : 0.07	c : 0.07	
c : 0.23	e : 0.15	3 : 0.15	b : 0.07	h : 0.07	= : 0.07	a : 0.07	g : 0.07	2 : 0.07	
2 : 0.23	e : 0.15	c : 0.15	3 : 0.15	b : 0.07	h : 0.07	= : 0.07	] : 0.07	
c : 0.23	e : 0.15	3 : 0.15	2 : 0.15	] : 0.07	4 : 0.07	= : 0.07	b : 0.07	
e : 0.23	b : 0.23	c : 0.15	] : 0.07	4 : 0.07	= : 0.07	d : 0.07	a : 0.07	
e : 0.23	c : 0.15	b : 0.15	g : 0.07	4 : 0.07	= : 0.07	d : 0.07	] : 0.07	3 : 0.07	
] : 0.30	g : 0.15	d : 0.15	c : 0.07	4 : 0.07	= : 0.07	e : 0.07	3 : 0.07	
e : 0.23	b : 0.15	g : 0.15	d : 0.15	] : 0.07	i : 0.07	= : 0.07	3 : 0.07	
e : 0.23	b : 0.15	g : 0.15	a : 0.07	i : 0.07	= : 0.07	d : 0.07	2 : 0.07	f : 0.07	
] : 0.23	g : 0.15	e : 0.15	2 : 0.15	= : 0.07	i : 0.07	d : 0.07	f : 0.07	
e : 0.23	g : 0.15	d : 0.15	= : 0.07	i : 0.07	[ : 0.07	b : 0.07	2 : 0.07	f : 0.07	
e : 0.23	d : 0.23	g : 0.15	= : 0.07	i : 0.07	c : 0.07	b : 0.07	f : 0.07	

#score	178.45142602338473
#seq	13
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_UTR_m3_run1.txt

#BEAR
eeeee[a[bbqqqqqqqqbb]a]eeee	chr1:230400886-230401178(+)$1	292	159	186	16.1170
dd[aa!!cccqqqqqqqqccc22a]a]	chr15:64448913-64449172(-)$1	259	196	223	17.6324
eee!!eeeeeqqqqqqqqeeeee]eee	chr11:71146459-71146743(-)$1	284	143	170	15.9499
###gggggggqqqqqqqqgggggggee	chr19:40953783-40954042(-)$1	259	143	170	16.2289
dddd"""cccqqqqqqqqccc4444dd	chr3:141644272-141644486(+)$1	214	147	174	16.7267
ffffff[cccqqqqqqqqccc22ffff	chr19:35657052-35657257(+)$1	205	13	40	16.4646
###bb[ddddqqqqqqqqdddd]bb77	chr12:46758227-46758438(-)$1	211	137	164	14.9496
:eeeee[cccqqqqqqqqccc]eeeee	chr12:58089514-58089726(+)$1	212	21	48	15.6273
c[bbaeeeeeqqqqqqqqeeeee333a	chr11:63520440-63520662(+)$1	222	58	85	15.5247
gg$$$$$cccqqqqqqqqccc22gggg	chr4:140624506-140624791(+)$1	285	206	233	16.7389
eeebb!!cccqqqqqqqqccc22bb66	chrX:47444961-47445166(+)$1	205	148	175	15.7359
gggg[bb[bbqqqqqqqqbb22bbggg	chr2:219140662-219140886(-)$1	224	93	120	15.2797
!!hhhhhhhhqqqqqqqqhhhhhhhh]	chr15:64448217-64448444(-)$1	227	81	108	14.3784
e!!gggggggqqqqqqqqggggggg33	chrX:153660074-153660340(+)$1	266	154	181	16.4943
!ggggggg[aqqqqqqqqa]ggggggg	chrX:153662657-153662892(+)$1	235	172	199	16.3509
fffff[ddddqqqqqqqqdddd]ffff	chr12:56119804-56120054(-)$1	250	94	121	16.2281
dd[ccc[cccqqqqqqqqcccccc]dd	chr6:7888905-7889162(-)$1	257	190	217	16.2522
[bb[ffffffqqqqqqqqffffffbb]	chr7:100224917-100225167(-)$1	250	89	116	13.9520
eeee[eeeeeqqqqqqqqeeeee]eee	chr12:110780973-110781266(+)$1	293	215	242	15.7065
ddd[a[ddddqqqqqqqqdddd]addd	chrX:153662538-153662782(+)$1	244	183	210	16.5195
"a####ddddqqqqqqqqdddd333a3	chr5:179132742-179132951(+)$1	209	90	117	17.4342
:cccffffffqqqqqqqqffffff]cc	chr7:105732155-105732409(-)$1	254	184	211	13.8843
ggg"""ddddqqqqqqqqdddd22ggg	chr15:58957237-58957496(-)$1	259	226	253	17.3938
!!hhhhhhhhqqqqqqqqhhhhhhhh]	chr11:6638830-6639090(-)$1	260	213	240	14.3784
cccccc[cccqqqqqqqqccc]ccc]c	chr9:132863284-132863554(+)$1	270	123	150	16.7211
b[bb!!ddddqqqqqqqqdddd22bb]	chr1:161479508-161479780(+)$1	272	150	177	16.1986
ccc"""ddddqqqqqqqqdddd333cc	chr9:5798705-5798975(-)$1	270	105	132	17.5371
eeeee"""bbqqqqqqqqbb333eeee	chr7:75610264-75610504(+)$1	240	208	235	16.4458
dd[bb!!cccqqqqqqqqccc22bbdd	chr7:75609556-75609789(+)$1	233	34	61	16.4487
eeeee"""bbqqqqqqqqbb22eeeee	chr11:62397818-62398077(-)$1	259	107	134	15.7382
bb####ddddqqqqqqqqdddd22bb7	chr15:45007583-45007830(+)$1	247	62	89	15.6667
gggg[bb[bbqqqqqqqqbb22bbggg	chr2:219140686-219140902(-)$1	216	109	136	15.2797
#ccc!!ddddqqqqqqqqdddd]ccc4	chr17:79817024-79817252(-)$1	228	9	36	17.3403
ddd[a[ddddqqqqqqqqdddd]addd	chrX:153662636-153662850(+)$1	214	85	112	16.5195
ddd[a[ddddqqqqqqqqdddd]addd	chrX:153662582-153662836(+)$1	254	139	166	16.5195
ccc!!a[cccqqqqqqqqccca22ccc	chr1:55517850-55518081(+)$1	231	74	101	17.5343
%eeeee!!bbqqqqqqqqbb333eeee	chr2:219140172-219140445(-)$1	273	97	124	15.9224
ccc]ccccccqqqqqqqqcccbb[fff	chr17:79803336-79803573(-)$1	237	49	76	14.9918
gg[dddd[bbqqqqqqqqbb]dddd]g	chr3:184046326-184046641(+)$1	315	88	115	15.1682
ggggggg[bbqqqqqqqqbbggggggg	chr3:141632488-141632719(+)$1	231	167	194	16.4748
eeeee!!cccqqqqqqqqccc]eeeee	chr17:76968599-76968873(-)$1	274	243	270	16.7519
gggg!!ddddqqqqqqqqdddd]gggg	chr5:102538707-102538967(+)$1	260	81	108	17.4837
::ddddddddqqqqqqqqdddd]dddd	chr5:137903262-137903478(-)$1	216	123	150	13.6968
ccc####cccqqqqqqqqccc22ccc:	chr17:79804204-79804469(-)$1	265	11	38	16.7324
GGeeeee[bbqqqqqqqqbb]eeeee:	chr11:118970870-118971098(-)$1	228	8	35	13.7123
ffffff!!bbqqqqqqqqbb333ffff	chr5:172447139-172447471(+)$1	332	199	226	16.0836
ggggggg[bbqqqqqqqqbbggggggg	chrX:153663384-153663630(+)$1	246	14	41	16.4748
biiiiiiiiiqqqqqqqqiiiiiiiii	chr12:56553753-56554019(+)$1	266	14	41	16.3903
:iiiiiiiiiqqqqqqqqiiiiiiiii	chr15:64429894-64430172(+)$1	278	191	218	15.7827
[iiiiiiiiiqqqqqqqqiiiiiiiii	chr12:46582652-46582953(-)$1	301	9	36	16.6648
ffffff[cccqqqqqqqqccc22ffff	chrX:40450385-40450689(+)$1	304	236	263	16.4646
"ccc[eeeeeqqqqqqqqeeeee]ccc	chr15:89449816-89450106(-)$1	290	171	198	16.1445
fffffeeeeeqqqqqqqqeeeee4444	chr11:130011741-130012038(+)$1	297	50	77	15.2700
#ccc!!ddddqqqqqqqqdddd22ccc	chr1:201112860-201113132(-)$1	272	114	141	17.3138
gg"""eeeeeqqqqqqqqeeeee333g	chr17:57842279-57842600(+)$1	321	287	314	16.3455
ccc!!eeeeeqqqqqqqqeeeee]ccc	chr1:54511264-54511560(-)$1	296	157	184	16.2424

#otherMatches

#Seq PSSM
ACACUUUGGGACACUUUGCUGAUGGUG	chr1:230400886-230401178(+)$1	292	159	186	16.1170
CAGCCUGGCUAGAUGGCAAGCAUGUGG	chr15:64448913-64449172(-)$1	259	196	223	17.6324
GCCUACUGCCUGGCCUGUGGCGGCGGC	chr11:71146459-71146743(-)$1	284	143	170	15.9499
CAAGGGUCAUCUCCAAACAUGACCUGG	chr19:40953783-40954042(-)$1	259	143	170	16.2289
UAACAACACUGGGAAAGAAGUAACAGU	chr3:141644272-141644486(+)$1	214	147	174	16.7267
UCUUCUAUGGUAAGUUAUCCACAGGAA	chr19:35657052-35657257(+)$1	205	13	40	16.4646
AGCUGCUUUGAUAAUUAACGAAACAAU	chr12:46758227-46758438(-)$1	211	137	164	14.9496
CCUGAUUGUUUAUUUUUUAAUUGUCAG	chr12:58089514-58089726(+)$1	212	21	48	15.6273
CUUACGGUUAUUCCUGCUUAACUUUUG	chr11:63520440-63520662(+)$1	222	58	85	15.5247
GUAUUUAUGCAAAAAGUAGCAGGAUAA	chr4:140624506-140624791(+)$1	285	206	233	16.7389
GGCCAUUCCCUAAAUCGUGGGCUUGUU	chrX:47444961-47445166(+)$1	205	148	175	15.7359
CUCCACAUGCUCUAUGCUGCUCUGGGG	chr2:219140662-219140886(-)$1	224	93	120	15.2797
UUCCACCUUUCUUUUCCAGGAGGUGGU	chr15:64448217-64448444(-)$1	227	81	108	14.3784
CAGCGCCUUUUCUAACCUAGAGGUGAG	chrX:153660074-153660340(+)$1	266	154	181	16.4943
GGUGACCUUCCCAUCACUGUGGGUCGC	chrX:153662657-153662892(+)$1	235	172	199	16.3509
UUAAUGUUACUGUGGGCUGUGGGAUUA	chr12:56119804-56120054(-)$1	250	94	121	16.2281
CCCCGGUGCUGGCAGCUGAGCCCGAGG	chr6:7888905-7889162(-)$1	257	190	217	16.2522
GACACUUAUGAGAACCUGCAUAAGGUG	chr7:100224917-100225167(-)$1	250	89	116	13.9520
AGGAACCAUUGAUCAGCGGGUGGCUCU	chr12:110780973-110781266(+)$1	293	215	242	15.7065
CUGACUCCCCUCACCUUUGGGGUGCAG	chrX:153662538-153662782(+)$1	244	183	210	16.5195
GCUCCUCCUUCAUCUCCCAAGGUUUGA	chr5:179132742-179132951(+)$1	209	90	117	17.4342
AGUAUAUGUUGAUACUAUGACAUGUUG	chr7:105732155-105732409(-)$1	254	184	211	13.8843
UUUAGGAAAUGGAAAUGAAUUUGAGGA	chr15:58957237-58957496(-)$1	259	226	253	17.3938
GACUUGCUGGCUGAGCAUCCGGUGAGA	chr11:6638830-6639090(-)$1	260	213	240	14.3784
UCACCAUUGCACUCAUUGGCACUGGCU	chr9:132863284-132863554(+)$1	270	123	150	16.7211
CAUCAUGCUGAGGUGCCACAGCUGGAA	chr1:161479508-161479780(+)$1	272	150	177	16.1986
CACUGUGAGGAGAAUGCACCUCUUUGU	chr9:5798705-5798975(-)$1	270	105	132	17.5371
GGGCGACGACGAUGGGAAGUGAGUGCC	chr7:75610264-75610504(+)$1	240	208	235	16.4458
GGUGCGGGUUGAACCUUGAACAGGCUC	chr7:75609556-75609789(+)$1	233	34	61	16.4487
CCAUCGUAGACCCCCACAUCAAGGUGG	chr11:62397818-62398077(-)$1	259	107	134	15.7382
ACGUCAUCCAGCAGAGAAUGGAAAGUC	chr15:45007583-45007830(+)$1	247	62	89	15.6667
CUCCACAUGCUCUAUGCUGCUCUGGGG	chr2:219140686-219140902(-)$1	216	109	136	15.2797
UGCAAGGCUCUGGCCCCUGAGUAUGCC	chr17:79817024-79817252(-)$1	228	9	36	17.3403
CUGACUCCCCUCACCUUUGGGGUGCAG	chrX:153662636-153662850(+)$1	214	85	112	16.5195
CUGACUCCCCUCACCUUUGGGGUGCAG	chrX:153662582-153662836(+)$1	254	139	166	16.5195
UCUCCCACAAAUGUCGCCUUGGAAAGA	chr1:55517850-55518081(+)$1	231	74	101	17.5343
GCAGUUCCUGGCUUACGACACACAGCU	chr2:219140172-219140445(-)$1	273	97	124	15.9224
GAUGGACUCGACUGCCAACGAGGUGGA	chr17:79803336-79803573(-)$1	237	49	76	14.9918
GCAGGUUGUAUGAAAUCUUGGAAUUGG	chr3:184046326-184046641(+)$1	315	88	115	15.1682
GUAUUCUUGUGAAAAUGAACAGAGUAC	chr3:141632488-141632719(+)$1	231	167	194	16.4748
CCUGUAUGCCUAUGCAGUGGCCACAGG	chr17:76968599-76968873(-)$1	274	243	270	16.7519
ACAGUUGAAUGUAUGUAAGUUUUCUGU	chr5:102538707-102538967(+)$1	260	81	108	17.4837
AAUGACUCGCAGAGACAGGUGAGGUCA	chr5:137903262-137903478(-)$1	216	123	150	13.6968
CCUCGAGUUCUUUGGCCUGAAGAAGGA	chr17:79804204-79804469(-)$1	265	11	38	16.7324
GCUGGCAGUGUUCUGUACCAAUGCCAU	chr11:118970870-118971098(-)$1	228	8	35	13.7123
GAAGACAUGCUCUACAGUGCUCAGUCU	chr5:172447139-172447471(+)$1	332	199	226	16.0836
aGGAGCAGAGCUGAGGAACUUGUUCCU	chrX:153663384-153663630(+)$1	246	14	41	16.4748
UGAAGGUGCUGGACUUUGAGCACUUUC	chr12:56553753-56554019(+)$1	266	14	41	16.3903
UAAAUAUAUAAAUACAAAUGUAUAUUU	chr15:64429894-64430172(+)$1	278	191	218	15.7827
AGAGGAAAAACUGUUCUAUUUUUUUUC	chr12:46582652-46582953(-)$1	301	9	36	16.6648
GuauuuauuauaaaaaauuaaaGGGAU	chrX:40450385-40450689(+)$1	304	236	263	16.4646
CCUGAAGGCCUUCAAGGUGGCCUACAG	chr15:89449816-89450106(-)$1	290	171	198	16.1445
CCACGUCUGCUUUAUUACGUAGGAAUC	chr11:130011741-130012038(+)$1	297	50	77	15.2700
UGCUGGUGGACCCUCUGAUCCGAAAGC	chr1:201112860-201113132(-)$1	272	114	141	17.3138
GAAAUGGAAUCUAAACAUAUUCCUUGU	chr17:57842279-57842600(+)$1	321	287	314	16.3455
CAGAAUCAGCUGCCAUUCGCUGAACUG	chr1:54511264-54511560(-)$1	296	157	184	16.2424

#DB
(((((.(.((........)).).))))	chr1:230400886-230401178(+)$1	1	159	186	16.1170
((.((..(((........)))..).).	chr15:64448913-64449172(-)$1	1	196	223	17.6324
(((..(((((........))))).)))	chr11:71146459-71146743(-)$1	1	143	170	15.9499
...(((((((........)))))))))	chr19:40953783-40954042(-)$1	1	143	170	16.2289
((((...(((........)))....))	chr3:141644272-141644486(+)$1	1	147	174	16.7267
((((((.(((........)))..))))	chr19:35657052-35657257(+)$1	1	13	40	16.4646
...((.((((........)))).))..	chr12:46758227-46758438(-)$1	1	137	164	14.9496
.(((((.(((........))).)))))	chr12:58089514-58089726(+)$1	1	21	48	15.6273
(.((((((((........)))))...)	chr11:63520440-63520662(+)$1	1	58	85	15.5247
((.....(((........)))..))))	chr4:140624506-140624791(+)$1	1	206	233	16.7389
(((((..(((........)))..))..	chrX:47444961-47445166(+)$1	1	148	175	15.7359
((((.((.((........))..)))))	chr2:219140662-219140886(-)$1	1	93	120	15.2797
..((((((((........)))))))).	chr15:64448217-64448444(-)$1	1	81	108	14.3784
(..(((((((........)))))))..	chrX:153660074-153660340(+)$1	1	154	181	16.4943
.(((((((.(........).)))))))	chrX:153662657-153662892(+)$1	1	172	199	16.3509
(((((.((((........)))).))))	chr12:56119804-56120054(-)$1	1	94	121	16.2281
((.(((.(((........)))))).))	chr6:7888905-7889162(-)$1	1	190	217	16.2522
.((.((((((........)))))))).	chr7:100224917-100225167(-)$1	1	89	116	13.9520
((((.(((((........))))).)))	chr12:110780973-110781266(+)$1	1	215	242	15.7065
(((.(.((((........)))).))))	chrX:153662538-153662782(+)$1	1	183	210	16.5195
.(....((((........))))...).	chr5:179132742-179132951(+)$1	1	90	117	17.4342
.(((((((((........)))))).))	chr7:105732155-105732409(-)$1	1	184	211	13.8843
(((...((((........))))..)))	chr15:58957237-58957496(-)$1	1	226	253	17.3938
..((((((((........)))))))).	chr11:6638830-6639090(-)$1	1	213	240	14.3784
((((((.(((........))).))).)	chr9:132863284-132863554(+)$1	1	123	150	16.7211
(.((..((((........))))..)).	chr1:161479508-161479780(+)$1	1	150	177	16.1986
(((...((((........))))...))	chr9:5798705-5798975(-)$1	1	105	132	17.5371
(((((...((........))...))))	chr7:75610264-75610504(+)$1	1	208	235	16.4458
((.((..(((........)))..))))	chr7:75609556-75609789(+)$1	1	34	61	16.4487
(((((...((........))..)))))	chr11:62397818-62398077(-)$1	1	107	134	15.7382
((....((((........))))..)).	chr15:45007583-45007830(+)$1	1	62	89	15.6667
((((.((.((........))..)))))	chr2:219140686-219140902(-)$1	1	109	136	15.2797
.(((..((((........)))).))).	chr17:79817024-79817252(-)$1	1	9	36	17.3403
(((.(.((((........)))).))))	chrX:153662636-153662850(+)$1	1	85	112	16.5195
(((.(.((((........)))).))))	chrX:153662582-153662836(+)$1	1	139	166	16.5195
(((..(.(((........))))..)))	chr1:55517850-55518081(+)$1	1	74	101	17.5343
.(((((..((........))...))))	chr2:219140172-219140445(-)$1	1	97	124	15.9224
))).)))(((........)))((.(((	chr17:79803336-79803573(-)$1	1	49	76	14.9918
((.((((.((........)).)))).)	chr3:184046326-184046641(+)$1	1	88	115	15.1682
(((((((.((........)))))))))	chr3:141632488-141632719(+)$1	1	167	194	16.4748
(((((..(((........))).)))))	chr17:76968599-76968873(-)$1	1	243	270	16.7519
((((..((((........)))).))))	chr5:102538707-102538967(+)$1	1	81	108	17.4837
..((((((((........)))).))))	chr5:137903262-137903478(-)$1	1	123	150	13.6968
(((....(((........)))..))).	chr17:79804204-79804469(-)$1	1	11	38	16.7324
(((((((.((........)).))))).	chr11:118970870-118971098(-)$1	1	8	35	13.7123
((((((..((........))...))))	chr5:172447139-172447471(+)$1	1	199	226	16.0836
(((((((.((........)))))))))	chrX:153663384-153663630(+)$1	1	14	41	16.4748
((((((((((........)))))))))	chr12:56553753-56554019(+)$1	1	14	41	16.3903
.(((((((((........)))))))))	chr15:64429894-64430172(+)$1	1	191	218	15.7827
.(((((((((........)))))))))	chr12:46582652-46582953(-)$1	1	9	36	16.6648
((((((.(((........)))..))))	chrX:40450385-40450689(+)$1	1	236	263	16.4646
.(((.(((((........))))).)))	chr15:89449816-89450106(-)$1	1	171	198	16.1445
((((((((((........)))))....	chr11:130011741-130012038(+)$1	1	50	77	15.2700
.(((..((((........))))..)))	chr1:201112860-201113132(-)$1	1	114	141	17.3138
((...(((((........)))))...)	chr17:57842279-57842600(+)$1	1	287	314	16.3455
(((..(((((........))))).)))	chr1:54511264-54511560(-)$1	1	157	184	16.2424

#PSSM
g : 0.16	e : 0.14	d : 0.12	c : 0.12	f : 0.08	# : 0.07	: : 0.07	! : 0.05	b : 0.05	[ : 0.03	" : 0.03	% : 0.01	G : 0.01	
g : 0.17	c : 0.17	e : 0.16	d : 0.12	f : 0.08	! : 0.05	i : 0.05	# : 0.03	[ : 0.03	b : 0.03	a : 0.01	: : 0.01	G : 0.01	
e : 0.17	c : 0.17	g : 0.12	d : 0.08	f : 0.08	[ : 0.07	# : 0.07	b : 0.05	i : 0.05	h : 0.03	$ : 0.01	! : 0.01	" : 0.01	
e : 0.14	g : 0.14	c : 0.10	f : 0.08	b : 0.08	[ : 0.07	! : 0.05	d : 0.05	# : 0.05	" : 0.05	i : 0.05	h : 0.03	a : 0.01	$ : 0.01	] : 0.01	
e : 0.12	! : 0.12	f : 0.12	a : 0.08	g : 0.08	" : 0.07	[ : 0.07	b : 0.05	c : 0.05	# : 0.05	i : 0.05	h : 0.03	d : 0.03	$ : 0.01	
e : 0.17	! : 0.14	[ : 0.10	g : 0.08	" : 0.08	f : 0.08	c : 0.05	# : 0.05	i : 0.05	b : 0.03	h : 0.03	d : 0.03	$ : 0.01	a : 0.01	
d : 0.26	e : 0.14	! : 0.10	[ : 0.10	g : 0.08	" : 0.05	i : 0.05	b : 0.03	h : 0.03	f : 0.03	a : 0.01	$ : 0.01	c : 0.01	# : 0.01	
c : 0.24	d : 0.24	[ : 0.12	e : 0.12	g : 0.05	i : 0.05	h : 0.03	f : 0.03	" : 0.03	! : 0.03	
c : 0.24	d : 0.24	b : 0.19	e : 0.12	i : 0.05	g : 0.03	h : 0.03	f : 0.03	[ : 0.01	
c : 0.24	d : 0.24	b : 0.19	e : 0.12	i : 0.05	g : 0.03	h : 0.03	f : 0.03	a : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.24	d : 0.24	b : 0.19	e : 0.12	i : 0.05	g : 0.03	h : 0.03	f : 0.03	a : 0.01	
c : 0.24	d : 0.24	b : 0.19	e : 0.12	i : 0.05	g : 0.03	h : 0.03	f : 0.03	] : 0.01	
c : 0.24	d : 0.24	e : 0.12	g : 0.08	] : 0.05	2 : 0.05	3 : 0.05	i : 0.05	h : 0.03	f : 0.03	
d : 0.26	2 : 0.17	e : 0.14	g : 0.08	] : 0.05	3 : 0.05	i : 0.05	a : 0.03	h : 0.03	f : 0.03	4 : 0.01	c : 0.01	b : 0.01	
2 : 0.21	e : 0.19	] : 0.16	g : 0.08	3 : 0.08	b : 0.05	i : 0.05	h : 0.03	c : 0.03	f : 0.03	4 : 0.01	d : 0.01	
e : 0.12	g : 0.12	f : 0.10	b : 0.08	2 : 0.08	a : 0.07	] : 0.07	3 : 0.07	c : 0.07	i : 0.05	4 : 0.03	h : 0.03	d : 0.03	[ : 0.01	
g : 0.17	e : 0.16	c : 0.12	b : 0.10	f : 0.08	d : 0.08	3 : 0.07	] : 0.05	i : 0.05	4 : 0.03	h : 0.03	
e : 0.17	g : 0.14	c : 0.14	d : 0.12	f : 0.08	3 : 0.05	b : 0.05	i : 0.05	a : 0.03	h : 0.03	] : 0.03	7 : 0.01	6 : 0.01	4 : 0.01	
g : 0.17	e : 0.16	d : 0.12	c : 0.12	] : 0.08	f : 0.08	i : 0.05	7 : 0.03	3 : 0.03	4 : 0.03	: : 0.03	a : 0.01	6 : 0.01	

#score	900.0114028298398
#seq	56
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_CDS_m2_run2.txt

#BEAR
fffffvvvvvvvvvvvvvff	chr19:14203530-14203805(-)$1	275	245	265	21.6372
eeeewwwwwwwwwwwwwwee	chr16:28914903-28915222(+)$1	319	208	228	21.7952
eebbwwwwwwwwwwwwwwbb	chr7:73010943-73011194(-)$1	251	56	76	20.7466
fffffvvvvvvvvvvvvvff	chr19:14203501-14203721(-)$1	220	161	181	21.6372
ddddyyyyyyyyyyyyyyyy	chr6:107955041-107955280(+)$1	239	76	96	20.6738
ffffwwwwwwwwwwwwwwff	chr12:49445608-49445838(-)$1	230	191	211	21.3038
[ddddtttttttttttdddd	chr6:33166829-33167119(-)$1	290	38	58	21.3406
"ddddtttttttttttdddd	chr12:122618043-122618361(+)$1	318	158	178	21.2360
eeeewwwwwwwwwwwwwwee	chr19:7934896-7935237(-)$1	341	294	314	21.7952
eeeeevvvvvvvvvvvvvee	chr7:75053302-75053567(-)$1	265	80	100	22.1366
ffffwwwwwwwwwwwwwwff	chr12:49445487-49445757(-)$1	270	110	130	21.3038
eeeeevvvvvvvvvvvvvee	chr16:67267637-67267939(-)$1	302	276	296	22.1366
dddduuuuuuuuuuuudddd	chr7:98507773-98508030(+)$1	257	159	179	22.2688
ddddvvvvvvvvvvvvvddd	chr12:7045482-7045745(+)$1	263	60	80	23.0882
fffffftttttttttttfff	chr11:61183552-61183825(-)$1	273	173	193	19.6369
dddduuuuuuuuuuuudddd	chr12:57110348-57110598(-)$1	250	162	182	22.2688
b!!ccctttttttttttccc	chr20:2816589-2816852(-)$1	263	73	93	20.3502
dddduuuuuuuuuuuudddd	chr8:22432193-22432439(+)$1	246	58	78	22.2688
dddduuuuuuuuuuuudddd	chr17:40947241-40947493(+)$1	252	220	240	22.2688
cddddtttttttttttdddd	chr14:99976820-99977149(+)$1	329	147	167	21.3304
cccccctttttttttttccc	chr12:57112086-57112374(-)$1	288	175	195	20.6943
ddddvvvvvvvvvvvvvddd	chr16:4658834-4659076(-)$1	242	150	170	23.0882
:cccvvvvvvvvvvvvvccc	chr19:35632158-35632490(+)$1	332	98	118	21.4511
dd[bbvvvvvvvvvvvvvbb	chr17:8046765-8047123(-)$1	358	230	250	21.3469
eeeeeuuuuuuuuuuuueee	chr8:145065321-145065581(+)$1	260	184	204	21.7668
ffffwwwwwwwwwwwwwwff	chr7:73011470-73011711(-)$1	241	98	118	21.3038
ddddyyyyyyyyyyyyyyyy	chr10:81058127-81058401(+)$1	274	149	169	20.6738
#ccctttttttttttccc]d	chr19:7936652-7936906(-)$1	254	52	72	19.7865
dddduuuuuuuuuuuudddd	chr11:10828728-10828969(-)$1	241	38	58	22.2688
ddddwwwwwwwwwwwwwwdd	chr16:57713966-57714283(+)$1	317	279	299	22.3816
dddduuuuuuuuuuuudddd	chr12:49445181-49445476(-)$1	295	257	277	22.2688
ddddwwwwwwwwwwwwwwdd	chr19:36211816-36212147(+)$1	331	193	213	22.3816
b!!ccctttttttttttccc	chr20:2816670-2816938(-)$1	268	159	179	20.3502
dddduuuuuuuuuuuudddd	chr3:126243135-126243375(+)$1	240	94	114	22.2688
!bb[avvvvvvvvvvvvva]	chr19:42401932-42402172(+)$1	240	100	120	21.5242
ddddtttttttttttdddd4	chr3:47451502-47451803(+)$1	301	78	98	20.1844
"ddddtttttttttttdddd	chr7:75052148-75052405(-)$1	257	132	152	21.2360
fffffvvvvvvvvvvvvvff	chr19:50819210-50819463(-)$1	253	219	239	21.6372
ddddvvvvvvvvvvvvvddd	chr12:53849568-53849776(+)$1	208	155	175	23.0882
eeeeevvvvvvvvvvvvvee	chr17:40946790-40947201(+)$1	411	103	123	22.1366
eeeeevvvvvvvvvvvvvee	chr1:245133919-245134200(+)$1	281	160	180	22.1366
dddduuuuuuuuuuuudddd	chr12:49434663-49434939(-)$1	276	56	76	22.2688
ff[ccctttttttttttccc	chr19:50149889-50150180(+)$1	291	29	49	20.5946
fffffvvvvvvvvvvvvvff	chr12:7045712-7045992(+)$1	280	3	23	21.6372
ddddwwwwwwwwwwwwwwdd	chr22:20937029-20937297(+)$1	268	99	119	22.3816
ffffffuuuuuuuuuuuuff	chr19:58199318-58199582(+)$1	264	144	164	20.3014
b[bbvvvvvvvvvvvvvbb]	chr1:224621495-224621752(-)$1	257	201	221	20.9099
ddddwwwwwwwwwwwwwwdd	chr2:71159720-71160005(+)$1	285	135	155	22.3816
eeeeettttttttttteeee	chr11:64897626-64897905(-)$1	279	5	25	20.5882
eeeeyyyyyyyyyyyyyyyy	chr1:33236505-33236844(+)$1	339	269	289	20.3215
fcccwwwwwwwwwwwwwwcc	chr6:31626748-31627041(+)$1	293	8	28	21.7201
ddddyyyyyyyyyyyyyyyy	chr1:8420138-8420409(-)$1	271	104	124	20.6738
dddduuuuuuuuuuuudddd	chr11:60899155-60899454(-)$1	299	87	107	22.2688
ee!!ccctttttttttttcc	chr2:74274132-74274394(+)$1	262	150	170	19.3031
eeeeyyyyyyyyyyyyyyyy	chr1:33236670-33236921(+)$1	251	104	124	20.3215
[cccwwwwwwwwwwwwwwcc	chr19:2248441-2248694(+)$1	253	12	32	21.7360
ffcccuuuuuuuuuuuuccc	chr6:33166980-33167258(-)$1	278	108	128	22.0049
ggggwwwwwwwwwwwwwwgg	chr17:42475035-42475330(-)$1	295	14	34	21.4211
ggggyyyyyyyyyyyyyyyy	chr1:8420937-8421326(-)$1	389	141	161	20.0462
ggggauuuuuuuuuuuua]g	chr12:7045922-7046180(+)$1	258	151	171	22.0651
ddddvvvvvvvvvvvvvddd	chr19:15376190-15376477(-)$1	287	253	273	23.0882
[ddddtttttttttttdddd	chr14:21905052-21905300(-)$1	248	179	199	21.3406
ffffwwwwwwwwwwwwwwff	chr2:242694628-242694976(+)$1	348	72	92	21.3038
ddddvvvvvvvvvvvvvddd	chr12:7045311-7045590(+)$1	279	231	251	23.0882
c[bbyyyyyyyyyyyyyyyy	chr11:801513-801772(-)$1	259	122	142	19.5678
fffffftttttttttttfff	chr17:80039602-80039851(-)$1	249	173	193	19.6369

#otherMatches

#Seq PSSM
GGGCUCACGCUUAACUCCAG	chr19:14203530-14203805(-)$1	275	245	265	21.6372
GCGCCCCCUCAGCCCCUUGC	chr16:28914903-28915222(+)$1	319	208	228	21.7952
CCGCCCUUCUCCACCCCAGC	chr7:73010943-73011194(-)$1	251	56	76	20.7466
GGGCUCACGCUUAACUCCAG	chr19:14203501-14203721(-)$1	220	161	181	21.6372
AGACUCCAAAUAUCCCUCCU	chr6:107955041-107955280(+)$1	239	76	96	20.6738
CCUCUGUCCCCUCCACCUGA	chr12:49445608-49445838(-)$1	230	191	211	21.3038
UGGGGCCCCACCCCCACCCC	chr6:33166829-33167119(-)$1	290	38	58	21.3406
CCUUCCAUCAGCCACAGAAG	chr12:122618043-122618361(+)$1	318	158	178	21.2360
CAGGUCCCUCCCUCUCCCCC	chr19:7934896-7935237(-)$1	341	294	314	21.7952
CUGAGACCCCACCUACCACU	chr7:75053302-75053567(-)$1	265	80	100	22.1366
CCUCUGUCCCCUCCACCUGA	chr12:49445487-49445757(-)$1	270	110	130	21.3038
GGCCCUGCGCCACCCUCUGG	chr16:67267637-67267939(-)$1	302	276	296	22.1366
GGAAGACAAGCAGACAUUCC	chr7:98507773-98508030(+)$1	257	159	179	22.2688
GAGGUUUCCUUAUUCAUCCU	chr12:7045482-7045745(+)$1	263	60	80	23.0882
CCCCACCAAACGCUACAGUG	chr11:61183552-61183825(-)$1	273	173	193	19.6369
GGGCCCAGCAACUCCAGCCC	chr12:57110348-57110598(-)$1	250	162	182	22.2688
ccAGGAUACCCCUUUUUUCC	chr20:2816589-2816852(-)$1	263	73	93	20.3502
UGGCAACUUGGAGCCAGCCA	chr8:22432193-22432439(+)$1	246	58	78	22.2688
GGCCCCCCACUUUCUAGGCC	chr17:40947241-40947493(+)$1	252	220	240	22.2688
CCCCUCAUCCUCCUCCAGGG	chr14:99976820-99977149(+)$1	329	147	167	21.3304
ACUCCUCCCUCCCCCAAAGG	chr12:57112086-57112374(-)$1	288	175	195	20.6943
CUUUCCCCCUUUUAACAAAA	chr16:4658834-4659076(-)$1	242	150	170	23.0882
cgccccaaccccucccaggc	chr19:35632158-35632490(+)$1	332	98	118	21.4511
GGUGCUCCCUAACUAUCUGU	chr17:8046765-8047123(-)$1	358	230	250	21.3469
GGGGCCCCUUACCCACAGCC	chr8:145065321-145065581(+)$1	260	184	204	21.7668
GGGGACAGAAAGCCAGCCCC	chr7:73011470-73011711(-)$1	241	98	118	21.3038
GUCAAACCACCCUUCCCGCC	chr10:81058127-81058401(+)$1	274	149	169	20.6738
UCAGUUUCAUCCCCUCUGCA	chr19:7936652-7936906(-)$1	254	52	72	19.7865
CAGGUAUUUCAUUUCUCCUG	chr11:10828728-10828969(-)$1	241	38	58	22.2688
GUGACCACCUGACCUUUUUC	chr16:57713966-57714283(+)$1	317	279	299	22.3816
GCCGCACCUGUCCCCCCGGC	chr12:49445181-49445476(-)$1	295	257	277	22.2688
AACUCCUCCAUCUACCCCAG	chr19:36211816-36212147(+)$1	331	193	213	22.3816
ccAGGAUACCCCUUUUUUCC	chr20:2816670-2816938(-)$1	268	159	179	20.3502
GCGCUCCUGCUCCUAUGCGC	chr3:126243135-126243375(+)$1	240	94	114	22.2688
uggucucuCCUUGUCUCUGU	chr19:42401932-42402172(+)$1	240	100	120	21.5242
AGUGCCACCCCGCUCCACUU	chr3:47451502-47451803(+)$1	301	78	98	20.1844
CGGCUACCAAACCCCAAGCC	chr7:75052148-75052405(-)$1	257	132	152	21.2360
GGCUUCAAAUCUCCCCCCAA	chr19:50819210-50819463(-)$1	253	219	239	21.6372
UGGCUGGACCCACUAAUGCC	chr12:53849568-53849776(+)$1	208	155	175	23.0882
CCUGGAACCCCCAUUUCCCC	chr17:40946790-40947201(+)$1	411	103	123	22.1366
ccuccuucccccucccucGG	chr1:245133919-245134200(+)$1	281	160	180	22.1366
GGGGAAUUCCACACUACCCC	chr12:49434663-49434939(-)$1	276	56	76	22.2688
AGCGUGAGAGCCAGAAGCAC	chr19:50149889-50150180(+)$1	291	29	49	20.5946
AGCCUUCUCUCCCAUCCCAG	chr12:7045712-7045992(+)$1	280	3	23	21.6372
CUGGCCCUGCCCCAUCUCCC	chr22:20937029-20937297(+)$1	268	99	119	22.3816
GAGGUCACACUGGAGAAAGA	chr19:58199318-58199582(+)$1	264	144	164	20.3014
ccgcauccucagccaccguc	chr1:224621495-224621752(-)$1	257	201	221	20.9099
UGUCCCAUCUCCCUCCUUGA	chr2:71159720-71160005(+)$1	285	135	155	22.3816
GGGUCUGUGUCCAUUUGGCC	chr11:64897626-64897905(-)$1	279	5	25	20.5882
GGUGCCUGCCCCCUUCUCCC	chr1:33236505-33236844(+)$1	339	269	289	20.3215
UCCCUAUGCUUACAAUUUGG	chr6:31626748-31627041(+)$1	293	8	28	21.7201
CUCCCCACCGUCCAGAUCAA	chr1:8420138-8420409(-)$1	271	104	124	20.6738
GCCCCCUUAUCCCCCCGGGC	chr11:60899155-60899454(-)$1	299	87	107	22.2688
GCACUCAUCUUUUGCUCCUG	chr2:74274132-74274394(+)$1	262	150	170	19.3031
GGUGCCUGCCCCCUUCUCCC	chr1:33236670-33236921(+)$1	251	104	124	20.3215
UGCACCCCCCAACUCCCAUG	chr19:2248441-2248694(+)$1	253	12	32	21.7360
GGGAGUCCCUCCCCCUUCUC	chr6:33166980-33167258(-)$1	278	108	128	22.0049
CAUGCCAUCCUACAACAUCA	chr17:42475035-42475330(-)$1	295	14	34	21.4211
UGUUCCCCACACCCACAUCC	chr1:8420937-8421326(-)$1	389	141	161	20.0462
CCUGCCCCCACCUCACAGCC	chr12:7045922-7046180(+)$1	258	151	171	22.0651
GCUCCCCAGCCCGUACAGAG	chr19:15376190-15376477(-)$1	287	253	273	23.0882
CCAGAAAUCUUCCGCCUCUG	chr14:21905052-21905300(-)$1	248	179	199	21.3406
UGUCCCUGCCUCCCACCCGA	chr2:242694628-242694976(+)$1	348	72	92	21.3038
GAGGUUUCCUUAUUCAUCCU	chr12:7045311-7045590(+)$1	279	231	251	23.0882
GUGACCUCCUCUCUCCCCCA	chr11:801513-801772(-)$1	259	122	142	19.5678
UUGGUGGAGACGAUGAGCAC	chr17:80039602-80039851(-)$1	249	173	193	19.6369

#DB
(((((.............))	chr19:14203530-14203805(-)$1	1	245	265	21.6372
((((..............))	chr16:28914903-28915222(+)$1	1	208	228	21.7952
((((..............))	chr7:73010943-73011194(-)$1	1	56	76	20.7466
(((((.............))	chr19:14203501-14203721(-)$1	1	161	181	21.6372
((((................	chr6:107955041-107955280(+)$1	1	76	96	20.6738
((((..............))	chr12:49445608-49445838(-)$1	1	191	211	21.3038
.((((...........))))	chr6:33166829-33167119(-)$1	1	38	58	21.3406
.((((...........))))	chr12:122618043-122618361(+)$1	1	158	178	21.2360
((((..............))	chr19:7934896-7935237(-)$1	1	294	314	21.7952
(((((.............))	chr7:75053302-75053567(-)$1	1	80	100	22.1366
((((..............))	chr12:49445487-49445757(-)$1	1	110	130	21.3038
(((((.............))	chr16:67267637-67267939(-)$1	1	276	296	22.1366
((((............))))	chr7:98507773-98508030(+)$1	1	159	179	22.2688
((((.............)))	chr12:7045482-7045745(+)$1	1	60	80	23.0882
((((((...........)))	chr11:61183552-61183825(-)$1	1	173	193	19.6369
((((............))))	chr12:57110348-57110598(-)$1	1	162	182	22.2688
(..(((...........)))	chr20:2816589-2816852(-)$1	1	73	93	20.3502
((((............))))	chr8:22432193-22432439(+)$1	1	58	78	22.2688
((((............))))	chr17:40947241-40947493(+)$1	1	220	240	22.2688
(((((...........))))	chr14:99976820-99977149(+)$1	1	147	167	21.3304
((((((...........)))	chr12:57112086-57112374(-)$1	1	175	195	20.6943
((((.............)))	chr16:4658834-4659076(-)$1	1	150	170	23.0882
.(((.............)))	chr19:35632158-35632490(+)$1	1	98	118	21.4511
((.((.............))	chr17:8046765-8047123(-)$1	1	230	250	21.3469
(((((............)))	chr8:145065321-145065581(+)$1	1	184	204	21.7668
((((..............))	chr7:73011470-73011711(-)$1	1	98	118	21.3038
((((................	chr10:81058127-81058401(+)$1	1	149	169	20.6738
.(((...........))).)	chr19:7936652-7936906(-)$1	1	52	72	19.7865
((((............))))	chr11:10828728-10828969(-)$1	1	38	58	22.2688
((((..............))	chr16:57713966-57714283(+)$1	1	279	299	22.3816
((((............))))	chr12:49445181-49445476(-)$1	1	257	277	22.2688
((((..............))	chr19:36211816-36212147(+)$1	1	193	213	22.3816
(..(((...........)))	chr20:2816670-2816938(-)$1	1	159	179	20.3502
((((............))))	chr3:126243135-126243375(+)$1	1	94	114	22.2688
.((.(.............).	chr19:42401932-42402172(+)$1	1	100	120	21.5242
((((...........)))).	chr3:47451502-47451803(+)$1	1	78	98	20.1844
.((((...........))))	chr7:75052148-75052405(-)$1	1	132	152	21.2360
(((((.............))	chr19:50819210-50819463(-)$1	1	219	239	21.6372
((((.............)))	chr12:53849568-53849776(+)$1	1	155	175	23.0882
(((((.............))	chr17:40946790-40947201(+)$1	1	103	123	22.1366
(((((.............))	chr1:245133919-245134200(+)$1	1	160	180	22.1366
((((............))))	chr12:49434663-49434939(-)$1	1	56	76	22.2688
((.(((...........)))	chr19:50149889-50150180(+)$1	1	29	49	20.5946
(((((.............))	chr12:7045712-7045992(+)$1	1	3	23	21.6372
((((..............))	chr22:20937029-20937297(+)$1	1	99	119	22.3816
((((((............))	chr19:58199318-58199582(+)$1	1	144	164	20.3014
(.((.............)).	chr1:224621495-224621752(-)$1	1	201	221	20.9099
((((..............))	chr2:71159720-71160005(+)$1	1	135	155	22.3816
(((((...........))))	chr11:64897626-64897905(-)$1	1	5	25	20.5882
((((................	chr1:33236505-33236844(+)$1	1	269	289	20.3215
((((..............))	chr6:31626748-31627041(+)$1	1	8	28	21.7201
((((................	chr1:8420138-8420409(-)$1	1	104	124	20.6738
((((............))))	chr11:60899155-60899454(-)$1	1	87	107	22.2688
((..(((...........))	chr2:74274132-74274394(+)$1	1	150	170	19.3031
((((................	chr1:33236670-33236921(+)$1	1	104	124	20.3215
.(((..............))	chr19:2248441-2248694(+)$1	1	12	32	21.7360
(((((............)))	chr6:33166980-33167258(-)$1	1	108	128	22.0049
((((..............))	chr17:42475035-42475330(-)$1	1	14	34	21.4211
((((................	chr1:8420937-8421326(-)$1	1	141	161	20.0462
(((((............).)	chr12:7045922-7046180(+)$1	1	151	171	22.0651
((((.............)))	chr19:15376190-15376477(-)$1	1	253	273	23.0882
.((((...........))))	chr14:21905052-21905300(-)$1	1	179	199	21.3406
((((..............))	chr2:242694628-242694976(+)$1	1	72	92	21.3038
((((.............)))	chr12:7045311-7045590(+)$1	1	231	251	23.0882
(.((................	chr11:801513-801772(-)$1	1	122	142	19.5678
((((((...........)))	chr17:80039602-80039851(-)$1	1	173	193	19.6369

#PSSM
d : 0.34	f : 0.21	e : 0.18	[ : 0.04	b : 0.04	c : 0.04	g : 0.04	" : 0.03	: : 0.01	# : 0.01	! : 0.01	
d : 0.42	f : 0.19	e : 0.18	c : 0.07	g : 0.04	! : 0.03	[ : 0.03	b : 0.01	
d : 0.40	f : 0.16	e : 0.15	c : 0.09	b : 0.06	! : 0.04	g : 0.04	[ : 0.03	
d : 0.40	f : 0.16	e : 0.15	c : 0.13	b : 0.06	g : 0.04	[ : 0.01	! : 0.01	
w : 0.21	u : 0.13	f : 0.10	y : 0.10	v : 0.10	e : 0.09	c : 0.09	d : 0.07	t : 0.03	a : 0.03	b : 0.01	
v : 0.25	w : 0.21	u : 0.18	t : 0.12	y : 0.10	c : 0.07	f : 0.04	
v : 0.25	w : 0.21	t : 0.21	u : 0.19	y : 0.10	c : 0.01	
v : 0.25	t : 0.22	w : 0.21	u : 0.19	y : 0.10	
v : 0.25	t : 0.22	w : 0.21	u : 0.19	y : 0.10	
v : 0.25	t : 0.22	w : 0.21	u : 0.19	y : 0.10	
v : 0.25	t : 0.22	w : 0.21	u : 0.19	y : 0.10	
v : 0.25	t : 0.22	w : 0.21	u : 0.19	y : 0.10	
v : 0.25	t : 0.22	w : 0.21	u : 0.19	y : 0.10	
v : 0.25	t : 0.22	w : 0.21	u : 0.19	y : 0.10	
v : 0.25	t : 0.22	w : 0.21	u : 0.19	y : 0.10	
v : 0.25	w : 0.21	t : 0.19	u : 0.19	y : 0.10	c : 0.01	d : 0.01	
v : 0.25	d : 0.22	w : 0.21	y : 0.10	t : 0.10	u : 0.06	c : 0.01	e : 0.01	
d : 0.30	w : 0.21	v : 0.15	y : 0.10	c : 0.10	f : 0.03	e : 0.03	u : 0.01	b : 0.01	t : 0.01	a : 0.01	
d : 0.36	f : 0.16	c : 0.13	e : 0.12	y : 0.10	b : 0.04	] : 0.03	a : 0.01	g : 0.01	
d : 0.36	f : 0.16	c : 0.13	e : 0.12	y : 0.10	b : 0.03	] : 0.03	g : 0.03	4 : 0.01	

#score	1416.1708291464956
#seq	66
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF844VZT_HNRNPU_UTR_m2_run1.txt

#BEAR
eee[eeeee[ddddmmmmdddd22eeeee]eeeeeeeeee	chr2:61763912-61764185(-)$1	273	54	94	15.2600
ffffff"""ccc[ammmma]ccc]ffffffccc!!eeeee	chr1:241794886-241795149(-)$1	263	57	97	15.7982
!!ccc####a[ccclllccc]a333ccc22bbffffff[b	chr4:2935989-2936300(-)$1	311	55	95	16.6965
!!eeeee!!ddddoooooodddd333eeeeedddd]a:::	chr12:109124206-109124496(-)$1	290	103	143	14.4258
!!a[gggggggaooooooa]ggggggga22cccggggggg	chr19:41770838-41771107(+)$1	269	44	84	15.4555
"""dddd"""ddddmmmmdddd333dddd22ffffffa[d	chr2:48011170-48011503(+)$1	333	135	175	17.9001
cccffffff[ddddmmmmdddd]ffffff]ccceeeee[b	chr16:67204990-67205240(+)$1	250	151	191	15.6635
=====[a!!eeeeemmmmeeeee22a]==========DDD	chr7:100027469-100027794(+)$1	325	255	295	13.7394
iiii$$$$$cccooooooccciiiiiiiiiccc[ccc!!f	chr7:142375233-142375498(+)$1	265	148	188	15.3617

#otherMatches

#Seq PSSM
GGGCCUGCACAUGGGAUUCCGUCUUGUAGUUCCUUUUCAG	chr2:61763912-61764185(-)$1	273	54	94	15.2600
CUUAUUGAAUCAGAGAAAUGUGAAGAUAAGAUGAACUAAA	chr1:241794886-241795149(-)$1	263	57	97	15.7982
gaccggggacgcgcaggguggggggcgggaccgggggcgc	chr4:2935989-2936300(-)$1	311	55	95	16.6965
UUUCCCUAAUAGCGGGGCAGCUGGCGAGGGACGCAGUAAA	chr12:109124206-109124496(-)$1	290	103	143	14.4258
GACACUCAGUGCAGGGGGGACACUGGGGGAGGGGCCUCUG	chr19:41770838-41771107(+)$1	269	44	84	15.4555
GGACCGCGGGGCCUAAUUGGGCGGGGCGGGGCCGUGGGGA	chr2:48011170-48011503(+)$1	333	135	175	17.9001
cacagugcaaugaugucaguuaaugcacuagugagggcau	chr16:67204990-67205240(+)$1	250	151	191	15.6635
CGGCCCCACGGUGCCACCGCACCAAGAGGCCGCCUCUGGG	chr7:100027469-100027794(+)$1	325	255	295	13.7394
UAUUCUAGAGUCCAUAUUGACAAUAGGGUUUACGACCUCG	chr7:142375233-142375498(+)$1	265	148	188	15.3617

#DB
(((.(((((.((((....))))..))))).)))))(((((	chr2:61763912-61764185(-)$1	1	54	94	15.2600
((((((...(((.(....).))).))))))(((..(((((	chr1:241794886-241795149(-)$1	1	57	97	15.7982
..(((....(.(((...))).)...)))..))((((((.(	chr4:2935989-2936300(-)$1	1	55	95	16.6965
..(((((..((((......))))...))))))))).)...	chr12:109124206-109124496(-)$1	1	103	143	14.4258
..(.((((((((......).))))))))..)))(((((((	chr19:41770838-41771107(+)$1	1	44	84	15.4555
...((((...((((....))))...))))..))))))(.(	chr2:48011170-48011503(+)$1	1	135	175	17.9001
(((((((((.((((....)))).)))))).)))(((((.(	chr16:67204990-67205240(+)$1	1	151	191	15.6635
(((((.(..(((((....)))))..).)))))))))))))	chr7:100027469-100027794(+)$1	1	255	295	13.7394
((((.....(((......))))))))))))(((.(((..(	chr7:142375233-142375498(+)$1	1	148	188	15.3617

#PSSM
! : 0.33	e : 0.11	f : 0.11	" : 0.11	c : 0.11	= : 0.11	i : 0.11	
! : 0.33	e : 0.11	f : 0.11	" : 0.11	c : 0.11	= : 0.11	i : 0.11	
e : 0.22	c : 0.22	f : 0.11	a : 0.11	" : 0.11	= : 0.11	i : 0.11	
[ : 0.22	f : 0.22	c : 0.11	e : 0.11	d : 0.11	= : 0.11	i : 0.11	
e : 0.22	f : 0.22	c : 0.11	g : 0.11	d : 0.11	= : 0.11	$ : 0.11	
e : 0.22	f : 0.22	# : 0.11	g : 0.11	d : 0.11	[ : 0.11	$ : 0.11	
e : 0.22	" : 0.11	# : 0.11	g : 0.11	d : 0.11	f : 0.11	a : 0.11	$ : 0.11	
" : 0.22	! : 0.22	e : 0.11	# : 0.11	g : 0.11	f : 0.11	$ : 0.11	
" : 0.22	! : 0.22	e : 0.11	# : 0.11	g : 0.11	f : 0.11	$ : 0.11	
[ : 0.22	c : 0.22	a : 0.11	d : 0.11	g : 0.11	" : 0.11	e : 0.11	
d : 0.44	c : 0.22	[ : 0.11	g : 0.11	e : 0.11	
d : 0.44	c : 0.33	a : 0.11	e : 0.11	
d : 0.44	o : 0.22	[ : 0.11	c : 0.11	e : 0.11	
d : 0.33	o : 0.33	a : 0.11	c : 0.11	e : 0.11	
m : 0.55	o : 0.33	l : 0.11	
m : 0.55	o : 0.33	l : 0.11	
m : 0.55	o : 0.33	l : 0.11	
m : 0.55	o : 0.33	c : 0.11	
d : 0.33	a : 0.22	c : 0.22	o : 0.11	e : 0.11	
d : 0.44	] : 0.22	c : 0.22	e : 0.11	
d : 0.44	c : 0.22	] : 0.11	g : 0.11	e : 0.11	
d : 0.44	c : 0.11	a : 0.11	g : 0.11	e : 0.11	i : 0.11	
3 : 0.22	2 : 0.11	c : 0.11	d : 0.11	g : 0.11	] : 0.11	e : 0.11	i : 0.11	
3 : 0.33	2 : 0.22	] : 0.11	g : 0.11	f : 0.11	i : 0.11	
3 : 0.33	f : 0.22	e : 0.11	g : 0.11	2 : 0.11	i : 0.11	
f : 0.22	e : 0.11	c : 0.11	3 : 0.11	g : 0.11	d : 0.11	a : 0.11	i : 0.11	
e : 0.22	f : 0.22	c : 0.11	g : 0.11	d : 0.11	] : 0.11	i : 0.11	
e : 0.22	f : 0.22	c : 0.11	a : 0.11	d : 0.11	= : 0.11	i : 0.11	
e : 0.22	f : 0.22	2 : 0.22	d : 0.11	= : 0.11	i : 0.11	
2 : 0.33	] : 0.22	f : 0.11	e : 0.11	= : 0.11	i : 0.11	
c : 0.44	e : 0.22	b : 0.11	2 : 0.11	= : 0.11	
c : 0.44	e : 0.11	b : 0.11	d : 0.11	f : 0.11	= : 0.11	
c : 0.44	f : 0.22	e : 0.11	d : 0.11	= : 0.11	
e : 0.22	f : 0.22	! : 0.11	d : 0.11	g : 0.11	= : 0.11	[ : 0.11	
e : 0.22	f : 0.22	! : 0.11	d : 0.11	g : 0.11	= : 0.11	c : 0.11	
e : 0.33	f : 0.22	] : 0.11	g : 0.11	= : 0.11	c : 0.11	
e : 0.33	f : 0.22	a : 0.11	g : 0.11	= : 0.11	c : 0.11	
e : 0.33	f : 0.11	: : 0.11	g : 0.11	a : 0.11	D : 0.11	! : 0.11	
[ : 0.33	e : 0.22	: : 0.11	g : 0.11	D : 0.11	! : 0.11	
e : 0.22	b : 0.22	: : 0.11	g : 0.11	d : 0.11	D : 0.11	f : 0.11	

#score	140.30130667044446
#seq	9
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_UTR_m1_run2.txt

#BEAR
======"""bb[cccoooooocccbb4444==========	chr11:581411-581715(+)$1	304	211	251	15.5302
ee####ccc[ccc[ddddllldddd]ccc]ccc4444eee	chr14:102974907-102975240(-)$1	333	24	64	14.5471
ccc[eeeeebbccc[bbmmmmbb333ccc]bb]eeeeecc	chr8:25316738-25317066(+)$1	328	99	139	12.4642
=======ccc!!cccooooooccc22ccc]==========	chr17:46651215-46651474(-)$1	259	164	204	17.4373
ffff####bb"""cccnnnnnccc333bb4444ffffff3	chr6:31937244-31937522(+)$1	278	223	263	13.6363
b[bb[dddd[ccc!!ccclllccc22cccdddd]bb]bb:	chr1:167992135-167992415(+)$1	280	119	159	13.0424
cc!!==========!!bbmmmmbb22==========22cc	chr1:46124652-46124917(-)$1	265	11	51	16.1056
eccc####ggggggg!!bblllbb22ggggggg4444ccc	chr7:142658772-142659049(-)$1	277	67	107	14.4932
ggg[ggggggg[eeeeellleeeee4444ggggggg]ggg	chr7:72992699-72992988(-)$1	289	145	185	12.7129
eeee"""===========lll===========666666ee	chr21:34931852-34932125(+)$1	273	228	268	13.3335
[ccc[eeeee!!cccccclllccc22ccc]eeeee]cccd	chr11:71189340-71189628(+)$1	288	98	138	15.6067
eeeee!!ffffffcccccclllccc]ccc]ffffff]eee	chr3:9475432-9475682(+)$1	250	166	206	12.7684
ccc[==========[ccclllccc]==========ccc44	chr4:68566649-68566956(-)$1	307	144	184	17.4389
iiiii"""ccc"""ddddmmmmddddccciiiiiiiii]e	chr1:1192339-1192599(-)$1	260	149	189	14.3694
ffffffdddd!!cccooooooccc4444dddd]ffffff]	chr19:50168027-50168279(-)$1	252	142	182	12.2583
====$$$$$dddd[ddddllldddd333dddd========	chr16:2647567-2647926(+)$1	359	218	258	13.8361
ccc[cccddddccc!!bbmmmmbb22ccc]dddd]ccc]c	chr11:800061-800345(-)$1	284	125	165	13.6173
""ggggggg[bb[cccnnnnnccc22bbggggggg4444c	chr10:3821486-3821828(-)$1	342	292	332	14.0338
========="""cccooooooccc333=============	chr16:67263356-67263630(-)$1	274	230	270	17.8381
ccc[a[ccceeeee[bbnnnnnbb22eeeee]ccc]a]cc	chr21:34915261-34915525(+)$1	264	13	53	13.3216
g[bb[ffffff####ccclllccc22ffffff]bb22ggg	chr12:123641284-123641574(-)$1	290	102	142	13.7001
ccc[ccc"""a[ccc[ccclllcccccc]a333ccc]ccc	chr3:47036714-47036995(+)$1	281	107	147	15.0044
c!!dddd[eeeee!!ccclllccc]eeeee22dddd]ccc	chr13:107211621-107212031(-)$1	410	332	372	13.2878
iiiiiii"""bb[cccnnnnnccc]bb333iiiiiiiii:	chr1:6845421-6845729(+)$1	308	234	274	13.6222
ccc[ccc[ccc"""cccrrrrrrrrrccc333ccc]ccc2	chr1:173991108-173991437(-)$1	329	82	122	13.1959
b[ccc[ccc[bb"""bbnnnnnbb333bb]ccc]cccbb:	chr1:226053601-226053858(-)$1	257	216	256	12.8163
!!bba[ccc"""ccc[ccclllccc]ccc]ccc]a]bb22	chr6:47445797-47446096(+)$1	299	204	244	14.3161
iiii!!a[==========lll==========a]iiiiiii	chr8:117861095-117861323(-)$1	228	34	74	17.4910
eeeccc[dddd[cccooooooccc]dddd22ccc]eeeee	chr7:72418844-72419119(-)$1	275	118	158	12.2832
a[eeeee[agggggggooooooggggggg]a]eeeee]af	chr17:77077931-77078230(+)$1	299	213	253	12.6144
ggggggg[eeeee!!bbnnnnnbbeeeeeggggggg]eee	chr6:105307288-105307678(-)$1	390	57	97	12.6228
]ccceeeee[bb!!cccmmmmccc22bb]eeeeegggggg	chr17:56082974-56083232(-)$1	258	114	154	12.8541
e[a[dddd"""ccc[cccmmmmccc]ccc]dddd]aeeee	chr12:93966458-93966742(+)$1	284	225	265	13.5267
b[ccc"""==========lll==========ccc]bb]dd	chr19:5663933-5664188(+)$1	255	48	88	15.6825
c!!a!!acccccc"""bbmmmmbb22ccc]ccc]a22a22	chr11:126145861-126146238(+)$1	377	235	275	15.0064
eeee####cccdddd[bbmmmmbb333dddd]ccc333ee	chr5:179249852-179250128(+)$1	276	32	72	13.7179
ggggggg"""ccc[cccmmmmcccccc]ggggggg22bbf	chr2:39663950-39664284(-)$1	334	107	147	13.9621
ddddddd[ccca"""cccmmmmccc]a]ccc]dddd]ddd	chr16:2221481-2221745(+)$1	264	125	165	12.4545
hhhhh[bb!!ccccccooooooccc]ccc]bb]hhhhhhh	chr12:107380673-107380993(-)$1	320	112	152	12.2982
c[eeeeeiiiiiiiiibblllbb]iiiiiiiii4444eee	chr15:42132878-42133154(+)$1	276	179	219	13.9625
ggggccc[ccc[cccccclllccc22ccc]cccccc]ggg	chr2:54197725-54198039(-)$1	314	151	191	17.2740
=======[eeeee[a[ammmma]a22eeeee22=======	chr3:142740212-142740496(+)$1	284	210	250	14.6941
"cccccc[ccc!!eeeeellleeeee22ccc]ccc]ccc4	chr6:43737931-43738175(+)$1	244	20	60	12.8967
"ccc####eeeee!!bbnnnnnbb22eeeee4444ccc33	chr7:100225736-100226021(-)$1	285	102	142	13.8273
!!bb!!eeeee[a[cccmmmmccca]eeeee22bb333dd	chr17:73221336-73221647(+)$1	311	61	101	13.0431
ggggggg[bb[ccccccmmmmccc]cccbb]gggggggee	chr10:70091812-70092081(+)$1	269	33	73	13.6303
====ccc[eeeeerrrrrrrrreeeee333ccc]======	chr3:195792215-195792432(-)$1	217	156	196	11.8069
a"""ccc[ccc####bboooooobb4444cccccc333a2	chr19:58280958-58281278(+)$1	320	178	218	14.5475
iiii!!a[==========lll==========a]iiiiiii	chr8:117861140-117861363(-)$1	223	74	114	17.4910
c[============[ccclllccc]============]cc	chr4:142154865-142155332(+)$1	467	64	104	18.0213
eee[a[a[dddd[ddddllldddd]dddd]a]a]eeeee2	chr2:70475408-70475698(-)$1	290	190	230	11.6333
ee!!ccc!!gggggggbbmmmmbb]gggggggccc]eeee	chr6:133119377-133119767(-)$1	390	325	365	13.3172
[ccc!!dddd[bb[cccmmmmccc333bb]dddd22ccc2	chr1:204485456-204485760(+)$1	304	122	162	13.8002
=======!!bb[a[ddddmmmmddddabb]==========	chr15:49913153-49913446(+)$1	293	203	243	14.2168

#otherMatches

#Seq PSSM
CGGGUAGGGGCGUCCCCAGGAGGAGCAGGGUGCCUGGUGU	chr11:581411-581715(+)$1	304	211	251	15.5302
cccaaacugagacgcaggggaccugaguucuaggccuggc	chr14:102974907-102975240(-)$1	333	24	64	14.5471
GAGCGGCUCCCGGCUGCGGGUGCUUUGCCAGGAGAGCCCU	chr8:25316738-25317066(+)$1	328	99	139	12.4642
GAAAAAAUUUGGAACCAUAAAGUUGAAAACUUUUUUCUCU	chr17:46651215-46651474(-)$1	259	164	204	17.4373
UGCGGCCAGCCUCUACACCCAGUGAAUGCCCCAUGUAAAA	chr6:31937244-31937522(+)$1	278	223	263	13.6363
CUCGGAUCCAUGUCACUUGACGAGCAACAGGGUGCGUGCA	chr1:167992135-167992415(+)$1	280	119	159	13.0424
GUAAAGAGGAAUCUUAGAAUAAUUACAGAUUCCUUUACAC	chr1:46124652-46124917(-)$1	265	11	51	16.1056
CCUUCUCCCUCCACUCACUUCAGGAAGGUGGGGACCAAAG	chr7:142658772-142659049(-)$1	277	67	107	14.4932
UCGGUGUUGCUUGGGCUGCUGGCCCUGAUGGCGACGGCGG	chr7:72992699-72992988(-)$1	289	145	185	12.7129
GGUAAGUAGGAGGAAUAUUAUGUAUUUUUCCUUUUUUAUA	chr21:34931852-34932125(+)$1	273	228	268	13.3335
AGGAAGUCCUGACGGCCACGCUGGAUCUGGAGGACGUCCG	chr11:71189340-71189628(+)$1	288	98	138	15.6067
ACUCAGAGGCAUGGGUGUCGAGGACUGCCUUAUGCUGUGA	chr3:9475432-9475682(+)$1	250	166	206	12.7684
CCCAUCAGGGGGAAGAGGCGUCCUGUUCUUCCUGGGGGAC	chr4:68566649-68566956(-)$1	307	144	184	17.4389
CACCAUCCUGACUGGGCUCCUGAGCUUCAUGGUGGAGAAG	chr1:1192339-1192599(-)$1	260	149	189	14.3694
CCGGUCGCGCCCAGGAAAUGCCCUAUACGCGCAGGCCGGA	chr19:50168027-50168279(-)$1	252	142	182	12.2583
CUGCCCUUCGCUGCCAGGACACCUGCCCCAGCGCGGCUUG	chr16:2647567-2647926(+)$1	359	218	258	13.8361
CCUGUGCGGGUGCCCGAGGAGGCUGAGGCUGCCCGGCAGA	chr11:800061-800345(-)$1	284	125	165	13.6173
AUGUGGGUGACCCUGGACUCGCCACUGGUACCCGCCCUUC	chr10:3821486-3821828(-)$1	342	292	332	14.0338
guaugcaugugaguguguguguaugugugugugugcaugc	chr16:67263356-67263630(-)$1	274	230	270	17.8381
CGGGCAUUCCCUUUGGAGCCAAUCAGGAAGGCGAGAGACC	chr21:34915261-34915525(+)$1	264	13	53	13.3216
CCAUUGUUUUCACCUAGGAAGCCUUGGAAGAUCGUUUGGA	chr12:123641284-123641574(-)$1	290	102	142	13.7001
CUGCGUCACCUGCUGCGCCCCCGGCCAGGAUUGGACUCGG	chr3:47036714-47036995(+)$1	281	107	147	15.0044
AAAGAGAUGGAAUACAGACUAUCUAAUUCCUUUCUCGUCU	chr13:107211621-107212031(-)$1	410	332	372	13.2878
GGCUggggggcggcgcggcgggcggcgggacccggccccg	chr1:6845421-6845729(+)$1	308	234	274	13.6222
gcccggcggcCUGGGACAGAAUCAGAGUCAACGGUGGCCU	chr1:173991108-173991437(-)$1	329	82	122	13.1959
GACUCCCCAGAGAUGCCAGGAAGGAGACUGUGGAGAGCCA	chr1:226053601-226053858(-)$1	257	216	256	12.8163
UUCCCGCCGCCCGUCCGGACCUUCCAGACCCGGGGAGGCU	chr6:47445797-47446096(+)$1	299	204	244	14.3161
UUGGGGGUCAUUUUUAUUCAGGAUGAAGAUGCAUCAGGGG	chr8:117861095-117861323(-)$1	228	34	74	17.4910
UCCUGGUGGGAAAGGAAGAUGCCUGUCCUCUCCGUGGAAG	chr7:72418844-72419119(-)$1	275	118	158	12.2832
GGUGGGUGGUGGCUUUCGUCCAAGGGCCAGCGGCCCAGUG	chr17:77077931-77078230(+)$1	299	213	253	12.6144
GCGUCUCCGCCUGCUGGACGGGCCCAGGCGAGAUGUAGGG	chr6:105307288-105307678(-)$1	390	57	97	12.6228
AGUGGUCUUAACAGUGGAAUUUCAAGGUAAGGAUUCAGGC	chr17:56082974-56083232(-)$1	258	114	154	12.8541
GGUGCCUUGAGCCCUCCGGGAAUGGCGGGGAAGGGACGCG	chr12:93966458-93966742(+)$1	284	225	265	13.5267
AUACAUUUGGGGUGGGGGAUCCCUCUAUCUCUGUCUCAUG	chr19:5663933-5664188(+)$1	255	48	88	15.6825
UGUGGAGCCGAGGAAAAGGUAACUGCCCUCCGGACAGCUG	chr11:126145861-126146238(+)$1	377	235	275	15.0064
UCAGCCCAUUCCAGCAGCUUAUGUCCAGCUGAGAACCCCU	chr5:179249852-179250128(+)$1	276	32	72	13.7179
GCCCCCCUCCCCUGCCCGGGAGGGAGGCGGGGGGCACCUG	chr2:39663950-39664284(-)$1	334	107	147	13.9621
GUAGGUUUGUGCCCCGGCCCAGGCCUGACGCCGACCGUGC	chr16:2221481-2221745(+)$1	264	125	165	12.4545
UUGAGACCGAGGACCGAAAUCCCGGCUCCAGGCCUCGGGG	chr12:107380673-107380993(-)$1	320	112	152	12.2982
GCGGGCUGGGGAGUUCCGGCGCGAGAGCUUCUCACUGAGC	chr15:42132878-42133154(+)$1	276	179	219	13.9625
cccccggagccgggcgggcgucccgagccgggcccgcggg	chr2:54197725-54198039(-)$1	314	151	191	17.2740
AUUGAUAUGCUUUAUGCUUUUGGAAGAAAGCUUUGUUAGU	chr3:142740212-142740496(+)$1	284	210	250	14.6941
AGGCUUGGGGCAGCCGGGUAGCUCGGAGGUCGUGGCGCUG	chr6:43737931-43738175(+)$1	244	20	60	12.8967
CCGCAGAAGUCUCCUCUUCAUCAGCUGGGACGGUGGUGAC	chr7:100225736-100226021(-)$1	285	102	142	13.8273
GUGGAUGGGAUGACGUCUCAUGGCUGGUCUCUCCCUUAGC	chr17:73221336-73221647(+)$1	311	61	101	13.0431
AGCGGUUGUCACCGCUGGAGACGGUUGGGAGAACCGUUGU	chr10:70091812-70092081(+)$1	269	33	73	13.6303
UUUUGUUUUCUUUUCUGUUCCUAAGGAUGUGGCUAGAGAA	chr3:195792215-195792432(-)$1	217	156	196	11.8069
GCCGCUGGUCGCGACCCGGGACAGGACAACGACAGGAACA	chr19:58280958-58281278(+)$1	320	178	218	14.5475
UUGGGGGUCAUUUUUAUUCAGGAUGAAGAUGCAUCAGGGG	chr8:117861140-117861363(-)$1	223	74	114	17.4910
UGAUGCUUAUUGGAAGAACCUUUCAUCUGAUAAGUAUGGU	chr4:142154865-142155332(+)$1	467	64	104	18.0213
GGGAUGGUGGUCGUCCCGGAGGGAAGGCCUCGGCCCUGCG	chr2:70475408-70475698(-)$1	290	190	230	11.6333
AAAGGCUGGGGCCUGAUCGUGGGGUUCGGGCCAGCGUUUC	chr6:133119377-133119767(-)$1	390	325	365	13.3172
CUGCCACCCCUCCCCCCACCCGGGCUCGGCGGGGGAGCGA	chr1:204485456-204485760(+)$1	304	122	162	13.8002
CGCCUCUCUGGAGACCAGUGGUCUGGCCCCAGAGGUGCGG	chr15:49913153-49913446(+)$1	293	203	243	14.2168

#DB
((((((...((.(((......)))))....))))))))))	chr11:581411-581715(+)$1	1	211	251	15.5302
((....(((.(((.((((...)))).))).)))....)))	chr14:102974907-102975240(-)$1	1	24	64	14.5471
(((.((((((((((.((....))...))).)).)))))))	chr8:25316738-25317066(+)$1	1	99	139	12.4642
((((((((((..(((......)))..))).))))))))))	chr17:46651215-46651474(-)$1	1	164	204	17.4373
((((....((...(((.....)))...))....)))))).	chr6:31937244-31937522(+)$1	1	223	263	13.6363
(.((.((((.(((..(((...)))..))))))).)).)).	chr1:167992135-167992415(+)$1	1	119	159	13.0424
((..((((((((((..((....))..))))))))))..))	chr1:46124652-46124917(-)$1	1	11	51	16.1056
((((....(((((((..((...))..)))))))....)))	chr7:142658772-142659049(-)$1	1	67	107	14.4932
(((.(((((((.(((((...)))))....))))))).)))	chr7:72992699-72992988(-)$1	1	145	185	12.7129
((((...(((((((((((...)))))))))))......))	chr21:34931852-34932125(+)$1	1	228	268	13.3335
.(((.(((((..((((((...)))..))).))))).))))	chr11:71189340-71189628(+)$1	1	98	138	15.6067
(((((..((((((((((((...))).))).)))))).)))	chr3:9475432-9475682(+)$1	1	166	206	12.7684
(((.((((((((((.(((...))).)))))))))))))..	chr4:68566649-68566956(-)$1	1	144	184	17.4389
(((((...(((...((((....)))))))))))))))).)	chr1:1192339-1192599(-)$1	1	149	189	14.3694
((((((((((..(((......)))....)))).)))))).	chr19:50168027-50168279(-)$1	1	142	182	12.2583
((((.....((((.((((...))))...))))))))))))	chr16:2647567-2647926(+)$1	1	218	258	13.8361
(((.((((((((((..((....))..))).)))).))).)	chr11:800061-800345(-)$1	1	125	165	13.6173
..(((((((.((.(((.....)))..)))))))))....)	chr10:3821486-3821828(-)$1	1	292	332	14.0338
(((((((((...(((......)))...)))))))))))))	chr16:67263356-67263630(-)$1	1	230	270	17.8381
(((.(.((((((((.((.....))..))))).))).).))	chr21:34915261-34915525(+)$1	1	13	53	13.3216
(.((.((((((....(((...)))..)))))).))..)))	chr12:123641284-123641574(-)$1	1	102	142	13.7001
(((.(((...(.(((.(((...)))))).)...))).)))	chr3:47036714-47036995(+)$1	1	107	147	15.0044
(..((((.(((((..(((...))).)))))..)))).)))	chr13:107211621-107212031(-)$1	1	332	372	13.2878
(((((((...((.(((.....))).))...))))))))).	chr1:6845421-6845729(+)$1	1	234	274	13.6222
(((.(((.(((...(((.........)))...))).))).	chr1:173991108-173991437(-)$1	1	82	122	13.1959
(.(((.(((.((...((.....))...)).))).))))).	chr1:226053601-226053858(-)$1	1	216	256	12.8163
..(((.(((...(((.(((...))).))).))).).))..	chr6:47445797-47446096(+)$1	1	204	244	14.3161
((((..(.((((((((((...))))))))))).)))))))	chr8:117861095-117861323(-)$1	1	34	74	17.4910
((((((.((((.(((......))).))))..))).)))))	chr7:72418844-72419119(-)$1	1	118	158	12.2832
(.(((((.((((((((......))))))).).))))).))	chr17:77077931-77078230(+)$1	1	213	253	12.6144
(((((((.(((((..((.....)))))))))))))).)))	chr6:105307288-105307678(-)$1	1	57	97	12.6228
.)))(((((.((..(((....)))..)).)))))((((((	chr17:56082974-56083232(-)$1	1	114	154	12.8541
(.(.((((...(((.(((....))).))).)))).)))))	chr12:93966458-93966742(+)$1	1	225	265	13.5267
(.(((...((((((((((...))))))))))))).)).))	chr19:5663933-5664188(+)$1	1	48	88	15.6825
(..(..(((((((...((....))..))).))).)..)..	chr11:126145861-126146238(+)$1	1	235	275	15.0064
((((....(((((((.((....))...)))).)))...))	chr5:179249852-179250128(+)$1	1	32	72	13.7179
(((((((...(((.(((....)))))).)))))))..)))	chr2:39663950-39664284(-)$1	1	107	147	13.9621
(((((((.((((...(((....))).).))).)))).)))	chr16:2221481-2221745(+)$1	1	125	165	12.4545
(((((.((..((((((......))).))).)).)))))))	chr12:107380673-107380993(-)$1	1	112	152	12.2982
(.((((((((((((((((...)).)))))))))....)))	chr15:42132878-42133154(+)$1	1	179	219	13.9625
(((((((.(((.((((((...)))..))).)))))).)))	chr2:54197725-54198039(-)$1	1	151	191	17.2740
(((((((.(((((.(.(....).)..)))))..)))))))	chr3:142740212-142740496(+)$1	1	210	250	14.6941
.((((((.(((..(((((...)))))..))).))).))).	chr6:43737931-43738175(+)$1	1	20	60	12.8967
.(((....(((((..((.....))..)))))....)))..	chr7:100225736-100226021(-)$1	1	102	142	13.8273
..((..(((((.(.(((....)))).)))))..))...))	chr17:73221336-73221647(+)$1	1	61	101	13.0431
(((((((.((.((((((....))).))))).)))))))((	chr10:70091812-70092081(+)$1	1	33	73	13.6303
(((((((.(((((.........)))))...))).))))))	chr3:195792215-195792432(-)$1	1	156	196	11.8069
(...(((.(((....((......))....))))))...).	chr19:58280958-58281278(+)$1	1	178	218	14.5475
((((..(.((((((((((...))))))))))).)))))))	chr8:117861140-117861363(-)$1	1	74	114	17.4910
(.((((((((((((.(((...))).)))))))))))).))	chr4:142154865-142155332(+)$1	1	64	104	18.0213
(((.(.(.((((.((((...)))).)))).).).))))).	chr2:70475408-70475698(-)$1	1	190	230	11.6333
((..(((..(((((((((....)).)))))))))).))))	chr6:133119377-133119767(-)$1	1	325	365	13.3172
.(((..((((.((.(((....)))...)).))))..))).	chr1:204485456-204485760(+)$1	1	122	162	13.8002
(((((((..((.(.((((....))))))).))))))))))	chr15:49913153-49913446(+)$1	1	203	243	14.2168

#PSSM
c : 0.20	e : 0.16	= : 0.12	g : 0.11	i : 0.07	b : 0.05	" : 0.05	f : 0.03	[ : 0.03	! : 0.03	a : 0.03	] : 0.01	d : 0.01	h : 0.01	
c : 0.24	[ : 0.14	= : 0.12	e : 0.12	g : 0.09	i : 0.07	! : 0.07	f : 0.03	" : 0.03	d : 0.01	h : 0.01	
c : 0.25	= : 0.14	e : 0.12	g : 0.11	b : 0.07	! : 0.07	i : 0.07	f : 0.03	# : 0.01	a : 0.01	d : 0.01	h : 0.01	" : 0.01	
[ : 0.16	c : 0.16	= : 0.14	e : 0.09	g : 0.09	b : 0.07	i : 0.07	f : 0.03	! : 0.03	d : 0.03	# : 0.01	a : 0.01	h : 0.01	" : 0.01	
c : 0.20	= : 0.14	# : 0.09	e : 0.09	g : 0.09	! : 0.09	[ : 0.05	a : 0.05	d : 0.05	i : 0.03	" : 0.01	f : 0.01	$ : 0.01	h : 0.01	
c : 0.16	= : 0.14	! : 0.11	# : 0.09	e : 0.09	g : 0.09	[ : 0.09	d : 0.07	" : 0.05	f : 0.03	$ : 0.01	i : 0.01	
c : 0.22	= : 0.12	e : 0.11	d : 0.11	g : 0.09	" : 0.07	# : 0.07	a : 0.07	! : 0.01	$ : 0.01	f : 0.01	i : 0.01	[ : 0.01	b : 0.01	
[ : 0.25	" : 0.11	c : 0.11	d : 0.11	= : 0.09	e : 0.07	# : 0.07	g : 0.03	f : 0.03	! : 0.03	$ : 0.01	b : 0.01	i : 0.01	
c : 0.24	e : 0.16	= : 0.14	d : 0.11	" : 0.09	g : 0.05	! : 0.05	b : 0.03	f : 0.03	$ : 0.01	a : 0.01	i : 0.01	
c : 0.16	e : 0.14	= : 0.12	d : 0.11	" : 0.11	b : 0.09	[ : 0.09	g : 0.07	f : 0.03	! : 0.01	i : 0.01	
c : 0.22	b : 0.12	= : 0.12	e : 0.12	" : 0.07	g : 0.07	d : 0.07	! : 0.05	f : 0.03	[ : 0.03	a : 0.01	i : 0.01	
c : 0.16	[ : 0.12	= : 0.12	e : 0.11	" : 0.09	b : 0.09	! : 0.07	g : 0.05	d : 0.05	# : 0.03	f : 0.01	a : 0.01	i : 0.01	
c : 0.33	= : 0.12	e : 0.12	" : 0.09	g : 0.05	[ : 0.05	d : 0.03	# : 0.03	! : 0.03	a : 0.03	f : 0.01	i : 0.01	b : 0.01	
c : 0.33	[ : 0.12	= : 0.12	! : 0.09	" : 0.09	g : 0.05	e : 0.05	# : 0.03	d : 0.03	i : 0.01	r : 0.01	
c : 0.37	d : 0.11	! : 0.11	[ : 0.09	= : 0.07	g : 0.05	" : 0.05	e : 0.03	# : 0.03	i : 0.01	a : 0.01	r : 0.01	
c : 0.37	b : 0.11	o : 0.09	d : 0.09	= : 0.07	[ : 0.07	! : 0.05	e : 0.03	g : 0.03	" : 0.01	i : 0.01	r : 0.01	
c : 0.33	b : 0.22	o : 0.12	d : 0.09	= : 0.07	n : 0.05	e : 0.03	! : 0.01	a : 0.01	r : 0.01	
c : 0.22	o : 0.14	m : 0.12	n : 0.12	b : 0.12	d : 0.07	= : 0.07	l : 0.03	r : 0.03	e : 0.01	
l : 0.31	m : 0.29	o : 0.14	n : 0.12	c : 0.05	r : 0.03	b : 0.01	
l : 0.38	m : 0.29	o : 0.14	n : 0.12	r : 0.03	
l : 0.35	m : 0.29	o : 0.14	n : 0.12	r : 0.03	e : 0.01	d : 0.01	
c : 0.37	m : 0.16	l : 0.07	= : 0.07	n : 0.07	d : 0.05	o : 0.05	b : 0.03	e : 0.03	r : 0.03	a : 0.01	
c : 0.48	b : 0.22	d : 0.09	= : 0.07	e : 0.05	r : 0.01	g : 0.01	] : 0.01	o : 0.01	
c : 0.48	b : 0.20	d : 0.09	= : 0.07	e : 0.05	3 : 0.01	r : 0.01	g : 0.01	] : 0.01	a : 0.01	
2 : 0.25	] : 0.14	c : 0.12	3 : 0.11	d : 0.07	e : 0.07	= : 0.07	b : 0.03	4 : 0.01	r : 0.01	g : 0.01	i : 0.01	a : 0.01	
2 : 0.25	] : 0.12	3 : 0.12	= : 0.11	d : 0.07	e : 0.07	4 : 0.05	c : 0.05	b : 0.03	g : 0.03	r : 0.01	i : 0.01	
c : 0.31	= : 0.12	e : 0.12	3 : 0.11	4 : 0.07	g : 0.05	b : 0.05	d : 0.03	a : 0.03	f : 0.01	i : 0.01	2 : 0.01	
c : 0.29	= : 0.14	b : 0.11	e : 0.11	4 : 0.07	g : 0.05	3 : 0.05	d : 0.05	] : 0.03	f : 0.01	i : 0.01	2 : 0.01	
c : 0.29	= : 0.14	e : 0.11	b : 0.09	g : 0.09	d : 0.09	4 : 0.05	] : 0.03	3 : 0.03	f : 0.01	i : 0.01	
] : 0.29	= : 0.14	g : 0.11	e : 0.11	d : 0.07	3 : 0.05	c : 0.05	4 : 0.03	i : 0.03	f : 0.01	a : 0.01	2 : 0.01	b : 0.01	
= : 0.20	c : 0.16	d : 0.12	g : 0.11	e : 0.11	i : 0.05	b : 0.03	f : 0.03	3 : 0.03	2 : 0.03	a : 0.03	4 : 0.01	] : 0.01	
c : 0.16	= : 0.14	g : 0.12	d : 0.11	] : 0.11	i : 0.05	2 : 0.05	b : 0.03	4 : 0.03	e : 0.03	f : 0.03	3 : 0.03	a : 0.03	
c : 0.25	= : 0.14	] : 0.11	d : 0.11	g : 0.11	e : 0.05	i : 0.05	4 : 0.03	2 : 0.03	6 : 0.01	f : 0.01	3 : 0.01	a : 0.01	
c : 0.18	= : 0.16	] : 0.11	g : 0.09	d : 0.09	4 : 0.07	e : 0.07	i : 0.07	f : 0.05	b : 0.03	6 : 0.01	h : 0.01	
= : 0.18	c : 0.16	g : 0.11	4 : 0.07	e : 0.07	i : 0.07	] : 0.07	f : 0.05	b : 0.05	d : 0.03	a : 0.03	6 : 0.01	h : 0.01	2 : 0.01	
= : 0.16	] : 0.11	c : 0.11	4 : 0.07	e : 0.07	g : 0.07	i : 0.07	2 : 0.07	f : 0.05	3 : 0.05	b : 0.03	d : 0.03	6 : 0.01	a : 0.01	h : 0.01	
= : 0.14	] : 0.14	c : 0.14	e : 0.11	4 : 0.07	2 : 0.07	i : 0.07	3 : 0.05	f : 0.03	b : 0.03	g : 0.03	6 : 0.01	a : 0.01	h : 0.01	
c : 0.18	e : 0.16	= : 0.12	g : 0.09	b : 0.07	i : 0.07	] : 0.07	3 : 0.05	f : 0.03	2 : 0.01	6 : 0.01	4 : 0.01	a : 0.01	d : 0.01	h : 0.01	
e : 0.20	c : 0.20	= : 0.12	g : 0.07	b : 0.05	i : 0.05	d : 0.05	f : 0.03	4 : 0.03	] : 0.03	2 : 0.03	a : 0.03	h : 0.01	3 : 0.01	
e : 0.20	c : 0.16	= : 0.12	2 : 0.11	g : 0.07	d : 0.07	: : 0.05	3 : 0.03	4 : 0.03	i : 0.03	f : 0.03	] : 0.01	h : 0.01	

#score	763.0127293688091
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_transcript_m1_run2.txt

#BEAR
========ttttttttttt========	chr4:83799794-83800027(-)$1	233	59	86	23.4782
$a!!bbvvvvvvvvvvvvvbb22a333	chr22:29696323-29696563(+)$1	240	21	48	22.7761
d!!addddtttttttttttdddd]a22	chr20:30309820-30310046(-)$1	226	74	101	22.4541
###ddddyyyyyyyyyyyyyyyydddd	chr6:42979465-42979734(+)$1	269	86	113	20.6095
[bbeeeeettttttttttteeeee]bb	chr1:219384768-219384983(+)$1	215	130	157	22.3260
!!eeeeevvvvvvvvvvvvveeeee]f	chr12:54626704-54626936(-)$1	232	199	226	25.0033
[ccc[bbuuuuuuuuuuuubb]cccbb	chr17:17158071-17158334(-)$1	263	90	117	22.8862
ffffffvvvvvvvvvvvvvffffffff	chr6:44413341-44413601(+)$1	260	36	63	22.4334
eeeeeeeuuuuuuuuuuuueeeee22e	chr11:62484453-62484717(-)$1	264	107	134	23.8527
fff!!bbvvvvvvvvvvvvvbb22fff	chr3:183898800-183899052(+)$1	252	190	217	22.3640
[eeeeewwwwwwwwwwwwwweeeee]a	chr11:64084428-64084680(-)$1	252	159	186	23.5899
iiiiiiixxxxxxxxxxxxxxxiiiii	chr7:128481466-128481720(+)$1	254	172	199	18.7650
ggggggguuuuuuuuuuuuggggggg3	chr10:112352859-112353084(+)$1	225	107	134	24.5515
=======yyyyyyyyyyyyyyyy====	chr11:62529949-62530213(+)$1	264	89	116	21.6814
####ddddtttttttttttdddd22dd	chr9:127620224-127620441(-)$1	217	90	117	22.0910
dddddyyyyyyyyyyyyyyyydddd]d	chr12:110872885-110873123(-)$1	238	172	199	20.3974
ffeeeeewwwwwwwwwwwwwweeeee2	chr9:123594005-123594253(-)$1	248	81	108	22.9478
gggggggvvvvvvvvvvvvvggggggg	chr3:138474696-138474922(-)$1	226	79	106	24.7041
$$$ddddtttttttttttddddccc]d	chr14:102261899-102262163(+)$1	264	212	239	21.6370
hhhhhhhvvvvvvvvvvvvvhhhhhhh	chr12:69647122-69647396(+)$1	274	182	209	21.8538
gggdddduuuuuuuuuuuudddd]ggg	chr20:43128282-43128526(-)$1	244	169	196	24.1499
::eeeeeuuuuuuuuuuuueeeeeccc	chr19:49251561-49251853(-)$1	292	42	69	22.4927
ddd[ccctttttttttttcccdddd==	chr9:15459615-15459819(+)$1	204	23	50	22.0126
[ffffffvvvvvvvvvvvvvffffffh	chr3:9845496-9845783(+)$1	287	187	214	23.3240
""eeeeevvvvvvvvvvvvveeeee44	chr8:103839417-103839669(-)$1	252	74	101	25.0529
ggggggguuuuuuuuuuuuggggggg:	chr17:45247181-45247448(-)$1	267	194	221	23.5262
""ddddbbtttttttttttbb]dddd5	chr19:49607830-49608083(+)$1	253	57	84	21.1605
hhhhhhwwwwwwwwwwwwwwhhhhhhh	chr1:182352921-182353184(-)$1	263	88	115	20.8919
%%eeeeeuuuuuuuuuuuueeeee555	chr18:9126753-9127008(+)$1	255	154	181	21.3252
$$$eeeeettttttttttteeeee666	chr8:99719302-99719566(-)$1	264	13	40	21.5643
cc[ddddvvvvvvvvvvvvvdddd]cc	chr6:26156699-26156933(+)$1	234	132	159	24.2878
iiiiiwwwwwwwwwwwwwwiiiiiiii	chr6:90357693-90357966(-)$1	273	44	71	22.6117
=======vvvvvvvvvvvvv=======	chr21:11174458-11174732(+)$1	274	90	117	25.1126
!ffffffvvvvvvvvvvvvvffffff]	chr9:35706105-35706353(-)$1	248	88	115	23.6127
cceeeeewwwwwwwwwwwwwweeeee2	chr5:94860065-94860326(-)$1	261	227	254	23.1742
[ffffffuuuuuuuuuuuuffffffff	chr7:158454790-158455032(-)$1	242	86	113	23.0827
###ddddvvvvvvvvvvvvvdddd444	chrX:135957315-135957525(-)$1	210	36	63	24.5231
agggggggtttttttttttgggggggH	chr2:73996294-73996551(-)$1	257	208	235	22.1524
[ccc[bbuuuuuuuuuuuubb]ccc]b	chr12:77240275-77240540(+)$1	265	138	165	23.2935
=======vvvvvvvvvvvvv=======	chr10:64948828-64949154(-)$1	326	292	319	25.1126
""cccwwwwwwwwwwwwwwcccfffff	chr1:15752267-15752511(+)$1	244	184	211	22.1345
ddd[ddddtttttttttttdddd]ddd	chr8:146017057-146017259(-)$1	202	108	135	21.7309
d!!addddtttttttttttdddd]a22	chr20:30309878-30310130(-)$1	252	158	185	22.4541
ggggggguuuuuuuuuuuuggggggg:	chr1:228284895-228285132(+)$1	237	164	191	23.5262
b[ddddwwwwwwwwwwwwwwdddd]bb	chrX:133627483-133627721(+)$1	238	94	121	22.3908
gggggggwwwwwwwwwwwwwwgggggg	chr7:20197840-20198099(-)$1	259	231	258	23.5238
ffffffyyyyyyyyyyyyyyyyfffff	chr20:43533508-43533725(+)$1	217	135	162	20.2930
ggggggguuuuuuuuuuuuggggggg2	chr2:75196435-75196709(+)$1	274	71	98	24.3320
#eeeeevvvvvvvvvvvvveeeee333	chr1:241680415-241680685(-)$1	270	156	183	24.5140
dd!!cccvvvvvvvvvvvvvccc]ddd	chr1:36807147-36807386(-)$1	239	126	153	23.8415
c!!cccwwwwwwwwwwwwwwccc22cc	chr6:28196551-28196819(+)$1	268	96	123	23.0917
ggggcccwwwwwwwwwwwwwwccc]gg	chr10:99225768-99225996(-)$1	228	137	164	23.4492
EEeeeeettttttttttteeeee====	chr17:7476059-7476282(+)$1	223	12	39	20.7971
ddfffffftttttttttttffffffdd	chr1:11292393-11292649(-)$1	256	91	118	21.1195
b!!ddddvvvvvvvvvvvvvdddd22b	chr20:35833067-35833313(+)$1	246	66	93	23.8613
eeeecccwwwwwwwwwwwwwwccc]ee	chr9:139733683-139733977(+)$1	294	71	98	22.7431
ccceeeeettttttttttteeeee]cc	chr3:185364070-185364302(-)$1	232	67	94	23.0484
::eeeeeuuuuuuuuuuuueeeeeddd	chr14:60759644-60759857(+)$1	213	89	116	22.1542
iiiiiiixxxxxxxxxxxxxxxiiiii	chr1:155290138-155290377(+)$1	239	36	63	18.7650

#otherMatches

#Seq PSSM
UUAUAGCUGGAGACAAGGAAGUUGUGA	chr4:83799794-83800027(-)$1	233	59	86	23.4782
UCUUCCUUCUUUUAAAAAUGGUUGUUU	chr22:29696323-29696563(+)$1	240	21	48	22.7761
UUUCCCAGAAAGGAUACAGCUGGAGUC	chr20:30309820-30310046(-)$1	226	74	101	22.4541
AUAGGGUUGUAUUAUUUCUUCUUACCC	chr6:42979465-42979734(+)$1	269	86	113	20.6095
AGUUCUUCAUUCUUGGGCAGAAGAGAC	chr1:219384768-219384983(+)$1	215	130	157	22.3260
CUUAUUCAUUGUUUCUGUUGGAAUGUG	chr12:54626704-54626936(-)$1	232	199	226	25.0033
UCAUUACAAGAUAUGGCAAGUCGUGUG	chr17:17158071-17158334(-)$1	263	90	117	22.8862
CCCCUGCUCUCCAGAUAAACAGGGGUC	chr6:44413341-44413601(+)$1	260	36	63	22.4334
GGGAGCUGGAGAAGGAGGAAGCUCAGC	chr11:62484453-62484717(-)$1	264	107	134	23.8527
CACAGCUGAUGAAACAAGCAAGAGGUG	chr3:183898800-183899052(+)$1	252	190	217	22.3640
CGGCCCAUCACUUGCUUCCCGGGCCAC	chr11:64084428-64084680(-)$1	252	159	186	23.5899
CUCUGCUGCCCUUACUACCCAUGGCAG	chr7:128481466-128481720(+)$1	254	172	199	18.7650
GUAUUACUUUGGAAGGUUUGUAAUACU	chr10:112352859-112353084(+)$1	225	107	134	24.5515
gagaaucugcauuuuaagaagaugauu	chr11:62529949-62530213(+)$1	264	89	116	21.6814
CCCAGGGCAAGAAGUACAAGCCCCUGG	chr9:127620224-127620441(-)$1	217	90	117	22.0910
CGGGCAGCCACCGUCUCCAGAGCCCUG	chr12:110872885-110873123(-)$1	238	172	199	20.3974
GCUGAAUUACUAAAACAAAUUGUUUAU	chr9:123594005-123594253(-)$1	248	81	108	22.9478
AAUGUCUUAUUUUUUCUCAUAGAUGUU	chr3:138474696-138474922(-)$1	226	79	106	24.7041
CUCUUGCUCUCCUCUCAUGCAAAUACA	chr14:102261899-102262163(+)$1	264	212	239	21.6370
UUUCACUACUAAACUAUACAAGUGGGA	chr12:69647122-69647396(+)$1	274	182	209	21.8538
AAUUUACUUUUUUUACACUGUAGCAUU	chr20:43128282-43128526(-)$1	244	169	196	24.1499
AAAGCUCAUAAACUGCCAAGAGCUCCA	chr19:49251561-49251853(-)$1	292	42	69	22.4927
UAUUGCUACAGGUCAUAAAGCAUGUUA	chr9:15459615-15459819(+)$1	204	23	50	22.0126
AGUUCCUUAAGAAUGUGAGUAGGGGCC	chr3:9845496-9845783(+)$1	287	187	214	23.3240
ACUUUUAAUUCUUUUCUUACUAAAAUU	chr8:103839417-103839669(-)$1	252	74	101	25.0529
AAAGCAUUUCCAUACAAGUAUGUUUUA	chr17:45247181-45247448(-)$1	267	194	221	23.5262
CAGCCGCUUACAAACACGCAGAUGGCA	chr19:49607830-49608083(+)$1	253	57	84	21.1605
UUUCUAUUAAAAGUGGGAAUUAGGAGA	chr1:182352921-182353184(-)$1	263	88	115	20.8919
AUGCUUUAUUUAUAUAUAGGAAGUUUU	chr18:9126753-9127008(+)$1	255	154	181	21.3252
AUAUUUCUUUCCAGUUAAUAGAAGAUG	chr8:99719302-99719566(-)$1	264	13	40	21.5643
GACGUGGAGAAGAACAACAGCCGCAUC	chr6:26156699-26156933(+)$1	234	132	159	24.2878
AUUUUGAUCACACAGCCAAAAAAUAAC	chr6:90357693-90357966(-)$1	273	44	71	22.6117
uucucugaugauuacugagguagagaa	chr21:11174458-11174732(+)$1	274	90	117	25.1126
CCAGACUAAAACAUUGGCAGAGUCUGC	chr9:35706105-35706353(-)$1	248	88	115	23.6127
CAUUAGUUACAAUUACUCUUUACUGAA	chr5:94860065-94860326(-)$1	261	227	254	23.1742
CAAACUUUACACGAUUAACAAGUUUGC	chr7:158454790-158455032(-)$1	242	86	113	23.0827
CACCACGAGAUUAUACUUACCGUGAUU	chrX:135957315-135957525(-)$1	210	36	63	24.5231
uuuacaaugguaauguaagguuguaaa	chr2:73996294-73996551(-)$1	257	208	235	22.1524
UUCUUGCUUUUUAUGAUCUGCUGGAUG	chr12:77240275-77240540(+)$1	265	138	165	23.2935
CCUCCUUAGGAAUAGAAAUGGAGGGGG	chr10:64948828-64949154(-)$1	326	292	319	25.1126
GGCCUGAAAAACAUGAUCAAGGAGGUG	chr1:15752267-15752511(+)$1	244	184	211	22.1345
AUCGCGGCGGGGAAGGAAGGUCGGGGU	chr8:146017057-146017259(-)$1	202	108	135	21.7309
UUUCCCAGAAAGGAUACAGCUGGAGUC	chr20:30309878-30310130(-)$1	252	158	185	22.4541
GUGGAGUACAAGAACAUCAGCUUCACU	chr1:228284895-228285132(+)$1	237	164	191	23.5262
CCUUGGUCAGGCAGUAUAAUCCAAAGA	chrX:133627483-133627721(+)$1	238	94	121	22.3908
ACAGAGAGAAAUACAAGGAAGUUUCUG	chr7:20197840-20198099(-)$1	259	231	258	23.5238
GCAUUUGAAAUUAGUAAGAAAGAAAUG	chr20:43533508-43533725(+)$1	217	135	162	20.2930
GAUAUACUCAUUGCUCUUUGUAUGUUU	chr2:75196435-75196709(+)$1	274	71	98	24.3320
AGAUCUACGAUGAACUUUAAGAUUGGA	chr1:241680415-241680685(-)$1	270	156	183	24.5140
CCGGGCCACAAUAGGGACAGGGCAGGG	chr1:36807147-36807386(-)$1	239	126	153	23.8415
CUUGUGGAUAUAGUACUGAGCACUUGG	chr6:28196551-28196819(+)$1	268	96	123	23.0917
CAGCAGCCACCUCGUACCCAAGCUCGC	chr10:99225768-99225996(-)$1	228	137	164	23.4492
GCGGCCAAACCAAUGCGAUGGCCGGGG	chr17:7476059-7476282(+)$1	223	12	39	20.7971
GUUGAUGAACUUUUUAUUAUCAUCAUG	chr1:11292393-11292649(-)$1	256	91	118	21.1195
CUUGACAUCCAGCAUAUUUCUGUUUUG	chr20:35833067-35833313(+)$1	246	66	93	23.8613
UGUUCGCACAGGUCCGGAGAAGCGCAG	chr9:139733683-139733977(+)$1	294	71	98	22.7431
UUCCUGGUCUUUGUCCUAAACCAGUGA	chr3:185364070-185364302(-)$1	232	67	94	23.0484
AACUAUCUUAAAUGUUCUUGGUAGGGG	chr14:60759644-60759857(+)$1	213	89	116	22.1542
UUUCCUGUCUUUCAACCUCUUCCAGGA	chr1:155290138-155290377(+)$1	239	36	63	18.7650

#DB
((((((((...........))))))))	chr4:83799794-83800027(-)$1	1	59	86	23.4782
.(..((.............))..)...	chr22:29696323-29696563(+)$1	1	21	48	22.7761
(..(((((...........)))).)..	chr20:30309820-30310046(-)$1	1	74	101	22.4541
...((((................))))	chr6:42979465-42979734(+)$1	1	86	113	20.6095
.(((((((...........))))).))	chr1:219384768-219384983(+)$1	1	130	157	22.3260
..(((((.............))))).)	chr12:54626704-54626936(-)$1	1	199	226	25.0033
.(((.((............)).)))))	chr17:17158071-17158334(-)$1	1	90	117	22.8862
((((((.............))))))))	chr6:44413341-44413601(+)$1	1	36	63	22.4334
(((((((............)))))..)	chr11:62484453-62484717(-)$1	1	107	134	23.8527
(((..((.............))..)))	chr3:183898800-183899052(+)$1	1	190	217	22.3640
.(((((..............))))).)	chr11:64084428-64084680(-)$1	1	159	186	23.5899
(((((((...............)))))	chr7:128481466-128481720(+)$1	1	172	199	18.7650
(((((((............))))))).	chr10:112352859-112353084(+)$1	1	107	134	24.5515
(((((((................))))	chr11:62529949-62530213(+)$1	1	89	116	21.6814
....((((...........))))..))	chr9:127620224-127620441(-)$1	1	90	117	22.0910
(((((................)))).)	chr12:110872885-110873123(-)$1	1	172	199	20.3974
(((((((..............))))).	chr9:123594005-123594253(-)$1	1	81	108	22.9478
(((((((.............)))))))	chr3:138474696-138474922(-)$1	1	79	106	24.7041
...((((...........))))))).)	chr14:102261899-102262163(+)$1	1	212	239	21.6370
(((((((.............)))))))	chr12:69647122-69647396(+)$1	1	182	209	21.8538
(((((((............)))).)))	chr20:43128282-43128526(-)$1	1	169	196	24.1499
..(((((............)))))(((	chr19:49251561-49251853(-)$1	1	42	69	22.4927
(((.(((...........)))))))))	chr9:15459615-15459819(+)$1	1	23	50	22.0126
.((((((.............)))))))	chr3:9845496-9845783(+)$1	1	187	214	23.3240
..(((((.............)))))..	chr8:103839417-103839669(-)$1	1	74	101	25.0529
(((((((............))))))).	chr17:45247181-45247448(-)$1	1	194	221	23.5262
..((((((...........)).)))).	chr19:49607830-49608083(+)$1	1	57	84	21.1605
((((((..............)))))))	chr1:182352921-182353184(-)$1	1	88	115	20.8919
..(((((............)))))...	chr18:9126753-9127008(+)$1	1	154	181	21.3252
...(((((...........)))))...	chr8:99719302-99719566(-)$1	1	13	40	21.5643
((.((((.............)))).))	chr6:26156699-26156933(+)$1	1	132	159	24.2878
(((((..............))))))))	chr6:90357693-90357966(-)$1	1	44	71	22.6117
(((((((.............)))))))	chr21:11174458-11174732(+)$1	1	90	117	25.1126
.((((((.............)))))).	chr9:35706105-35706353(-)$1	1	88	115	23.6127
(((((((..............))))).	chr5:94860065-94860326(-)$1	1	227	254	23.1742
.((((((............))))))))	chr7:158454790-158455032(-)$1	1	86	113	23.0827
...((((.............))))...	chrX:135957315-135957525(-)$1	1	36	63	24.5231
)(((((((...........))))))))	chr2:73996294-73996551(-)$1	1	208	235	22.1524
.(((.((............)).))).)	chr12:77240275-77240540(+)$1	1	138	165	23.2935
(((((((.............)))))))	chr10:64948828-64949154(-)$1	1	292	319	25.1126
..(((..............))))))))	chr1:15752267-15752511(+)$1	1	184	211	22.1345
(((.((((...........)))).)))	chr8:146017057-146017259(-)$1	1	108	135	21.7309
(..(((((...........)))).)..	chr20:30309878-30310130(-)$1	1	158	185	22.4541
(((((((............))))))).	chr1:228284895-228285132(+)$1	1	164	191	23.5262
(.((((..............)))).))	chrX:133627483-133627721(+)$1	1	94	121	22.3908
(((((((..............))))))	chr7:20197840-20198099(-)$1	1	231	258	23.5238
((((((................)))))	chr20:43533508-43533725(+)$1	1	135	162	20.2930
(((((((............))))))).	chr2:75196435-75196709(+)$1	1	71	98	24.3320
.(((((.............)))))...	chr1:241680415-241680685(-)$1	1	156	183	24.5140
((..(((.............))).)))	chr1:36807147-36807386(-)$1	1	126	153	23.8415
(..(((..............)))..))	chr6:28196551-28196819(+)$1	1	96	123	23.0917
(((((((..............))).))	chr10:99225768-99225996(-)$1	1	137	164	23.4492
(((((((...........)))))((((	chr17:7476059-7476282(+)$1	1	12	39	20.7971
))((((((...........))))))((	chr1:11292393-11292649(-)$1	1	91	118	21.1195
(..((((.............))))..)	chr20:35833067-35833313(+)$1	1	66	93	23.8613
(((((((..............))).))	chr9:139733683-139733977(+)$1	1	71	98	22.7431
((((((((...........))))).))	chr3:185364070-185364302(-)$1	1	67	94	23.0484
..(((((............)))))(((	chr14:60759644-60759857(+)$1	1	89	116	22.1542
(((((((...............)))))	chr1:155290138-155290377(+)$1	1	36	63	18.7650

#PSSM
g : 0.13	d : 0.11	[ : 0.10	= : 0.06	# : 0.06	f : 0.06	c : 0.06	$ : 0.05	i : 0.05	" : 0.05	! : 0.03	e : 0.03	h : 0.03	: : 0.03	b : 0.03	% : 0.01	a : 0.01	E : 0.01	
g : 0.15	f : 0.11	! : 0.08	c : 0.08	d : 0.08	= : 0.06	e : 0.06	# : 0.05	i : 0.05	" : 0.05	$ : 0.03	h : 0.03	: : 0.03	a : 0.01	b : 0.01	% : 0.01	[ : 0.01	E : 0.01	
e : 0.20	g : 0.15	f : 0.11	! : 0.10	d : 0.08	= : 0.06	c : 0.06	# : 0.05	i : 0.05	$ : 0.03	h : 0.03	b : 0.01	[ : 0.01	
e : 0.25	d : 0.15	g : 0.13	f : 0.10	= : 0.06	c : 0.06	! : 0.05	i : 0.05	a : 0.03	h : 0.03	[ : 0.03	# : 0.01	
e : 0.23	d : 0.22	g : 0.11	f : 0.10	c : 0.10	= : 0.06	i : 0.05	[ : 0.03	h : 0.03	b : 0.01	! : 0.01	
e : 0.23	d : 0.20	g : 0.11	f : 0.10	c : 0.08	= : 0.06	b : 0.06	i : 0.03	h : 0.03	w : 0.03	y : 0.01	
e : 0.20	d : 0.16	g : 0.11	w : 0.10	= : 0.06	b : 0.06	c : 0.06	f : 0.06	v : 0.05	i : 0.03	y : 0.03	h : 0.01	
v : 0.27	u : 0.20	w : 0.18	d : 0.06	y : 0.06	e : 0.05	t : 0.05	x : 0.03	= : 0.01	b : 0.01	g : 0.01	f : 0.01	
v : 0.27	t : 0.23	u : 0.20	w : 0.18	y : 0.06	x : 0.03	
v : 0.27	t : 0.23	u : 0.20	w : 0.18	y : 0.06	x : 0.03	
v : 0.27	t : 0.23	u : 0.20	w : 0.18	y : 0.06	x : 0.03	
v : 0.27	t : 0.23	u : 0.20	w : 0.18	y : 0.06	x : 0.03	
v : 0.27	t : 0.23	u : 0.20	w : 0.18	y : 0.06	x : 0.03	
v : 0.27	t : 0.23	u : 0.20	w : 0.18	y : 0.06	x : 0.03	
v : 0.27	t : 0.23	u : 0.20	w : 0.18	y : 0.06	x : 0.03	
v : 0.27	t : 0.23	u : 0.20	w : 0.18	y : 0.06	x : 0.03	
v : 0.27	t : 0.23	u : 0.20	w : 0.18	y : 0.06	x : 0.03	
v : 0.27	t : 0.23	u : 0.20	w : 0.18	y : 0.06	x : 0.03	
v : 0.27	u : 0.20	t : 0.18	w : 0.18	y : 0.06	x : 0.03	d : 0.01	c : 0.01	e : 0.01	
v : 0.22	e : 0.15	w : 0.15	d : 0.10	g : 0.08	b : 0.06	y : 0.06	f : 0.05	x : 0.03	c : 0.03	= : 0.01	i : 0.01	
e : 0.20	d : 0.16	g : 0.10	b : 0.08	f : 0.08	w : 0.08	y : 0.06	c : 0.06	= : 0.05	x : 0.03	h : 0.03	i : 0.01	
e : 0.23	d : 0.20	g : 0.11	f : 0.08	c : 0.08	= : 0.05	y : 0.05	] : 0.05	x : 0.03	h : 0.03	2 : 0.01	b : 0.01	i : 0.01	
e : 0.23	d : 0.20	c : 0.11	f : 0.11	g : 0.11	= : 0.05	i : 0.05	2 : 0.03	y : 0.03	h : 0.03	
e : 0.22	d : 0.13	f : 0.11	g : 0.11	= : 0.08	] : 0.08	c : 0.08	2 : 0.05	i : 0.05	h : 0.03	a : 0.01	
f : 0.13	g : 0.13	d : 0.11	] : 0.10	= : 0.08	e : 0.08	c : 0.06	2 : 0.06	i : 0.05	3 : 0.03	a : 0.03	h : 0.03	5 : 0.01	6 : 0.01	4 : 0.01	
g : 0.15	d : 0.11	f : 0.11	= : 0.10	] : 0.08	2 : 0.06	c : 0.06	b : 0.05	i : 0.05	e : 0.05	3 : 0.03	h : 0.03	4 : 0.03	5 : 0.01	6 : 0.01	
d : 0.13	= : 0.10	f : 0.10	2 : 0.08	b : 0.08	g : 0.06	c : 0.06	3 : 0.05	i : 0.05	h : 0.05	e : 0.03	4 : 0.03	: : 0.03	5 : 0.03	a : 0.01	6 : 0.01	] : 0.01	H : 0.01	

#score	1340.6385340853858
#seq	59
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_transcript_m3_run2.txt

#BEAR
&eeeeeooooooeeeee22	chr9:136216892-136217097(+)$1	205	87	106	10.2607
ffffffooooooffffff:	chr1:28833967-28834174(+)$1	207	3	22	10.7108
ffff[aooooooa]fffff	chr1:155889621-155889826(-)$1	205	81	100	11.4107
ggg[bboooooobb]gggg	chr3:52725345-52725562(+)$1	217	109	128	12.1122
ggggggooooooggggggg	chr14:95999616-95999820(-)$1	204	94	113	12.8043
ggggggooooooggggggg	chr1:109642835-109643059(+)$1	224	155	174	12.8043
ggggggooooooggggggg	chr2:207026940-207027150(+)$1	210	178	197	12.8043
cc[cccooooooccc]ccc	chr11:75115443-75115706(+)$1	263	240	259	11.5357
[eeeeeooooooeeeee]a	chr20:47895395-47895614(+)$1	219	17	36	11.3935
ggggggooooooggggggg	chr3:186505079-186505292(+)$1	213	98	117	12.8043
ggg[bboooooobb]gggg	chr3:52725295-52725539(+)$1	244	159	178	12.1122
iiiiiiooooooiiiiiii	chr11:93454851-93455063(+)$1	212	3	22	12.2240
ffffffooooooffffff:	chr7:98479333-98479538(+)$1	205	106	125	10.7108
ggggggooooooggggggg	chr2:207026969-207027181(+)$1	212	149	168	12.8043
ggggggooooooggggggg	chr22:39709755-39709969(-)$1	214	14	33	12.8043
c!!cccooooooccc22cc	chr7:103131079-103131335(-)$1	256	211	230	11.2016
ceeeeeooooooeeeee]c	chr17:2233484-2233691(-)$1	207	179	198	11.3179
%ccc[aooooooaccc444	chr6:31803000-31803204(+)$1	204	122	141	10.4052
hhhhhhoooooohhhhhhh	chr1:76255108-76255312(+)$1	204	168	187	10.2931
ggggggooooooggggggg	chr2:21235935-21236182(-)$1	247	196	215	12.8043
ffffffooooooffffff:	chr7:98479308-98479511(+)$1	203	131	150	10.7108
""ddddoooooodddd22d	chr2:207026907-207027112(+)$1	205	110	129	10.0186
dda[bboooooobb]a444	chr20:47897145-47897356(+)$1	211	59	78	10.4188
ggggggooooooggggggg	chr14:95999666-95999869(-)$1	203	143	162	12.8043
#eeeeeooooooeeeee]d	chr12:9225291-9225519(-)$1	228	39	58	11.1466
======oooooo=======	chr11:17096108-17096330(-)$1	222	142	161	12.2156
ggggggooooooggggggg	chr1:109642901-109643102(+)$1	201	89	108	12.8043
ggg[bboooooobb]gggg	chr3:52725339-52725545(+)$1	206	115	134	12.1122
fff[bboooooobbfffff	chr6:160479844-160480079(+)$1	235	49	68	11.2377
ffffffooooooffffff]	chr10:70514854-70515082(+)$1	228	101	120	11.6237
ccccccooooooccc]ccc	chr2:216239843-216240107(-)$1	264	141	160	11.4645
c[ddddoooooodddd]cc	chr2:216298029-216298271(-)$1	242	168	187	10.6102
!!ddddoooooodddd22c	chr4:119200308-119200510(+)$1	202	121	140	10.4380
!!ddddoooooodddd22e	chr4:53578778-53578991(+)$1	213	30	49	10.3333
ggggggooooooggggggg	chr10:101996814-101997032(-)$1	218	198	217	12.8043
ff[cccooooooccc333f	chr2:21245678-21245959(-)$1	281	202	221	11.5668
hhhhhhoooooohhhhhhh	chr2:29136491-29136705(+)$1	214	151	170	10.2931
ffffffooooooffffff]	chr1:28905193-28905424(-)$1	231	164	183	11.6237
d[ddddooooooddddddd	chr7:98479351-98479555(+)$1	204	110	129	9.8370
eeeebboooooobb]eeee	chr1:31421858-31422130(-)$1	272	85	104	10.8384
"eeeeeooooooeeeeeee	chr2:21245776-21246010(-)$1	234	121	140	11.0063
eee!!aooooooa22eeee	chr2:216289725-216289930(-)$1	205	151	170	10.6198
ggggggooooooggggggg	chr12:9243905-9244124(-)$1	219	181	200	12.8043
ddd[bboooooobb]dddd	chr15:66795506-66795721(-)$1	215	95	114	10.1950
[bb[bboooooobb]bb]e	chr20:2634793-2635017(+)$1	224	151	170	10.2463
ffffffooooooffffff2	chr2:216241200-216241433(-)$1	233	140	159	11.4057
gggggggnnnnnggggggg	chr8:124446611-124446908(+)$1	297	232	251	7.6009
ggggggooooooggggggg	chr2:207026950-207027156(+)$1	206	168	187	12.8043
ffffffooooooffffff9	chr12:9254115-9254363(-)$1	248	63	82	10.9642
hhhhhhoooooohhhhhhh	chr1:76255097-76255308(+)$1	211	179	198	10.2931
ffffffooooooffffffC	chr13:27829102-27829313(+)$1	211	138	157	10.5064
!eeeeeooooooeeeeebb	chr2:216243810-216244022(-)$1	212	164	183	10.7219

#otherMatches

#Seq PSSM
AUUACUGUGAAGAGUAAAA	chr9:136216892-136217097(+)$1	205	87	106	10.2607
uuuccacaacguuggaaau	chr1:28833967-28834174(+)$1	207	3	22	10.7108
GUCCCCUUACCUGUGGGCU	chr1:155889621-155889826(-)$1	205	81	100	11.4107
GAUCUUGCCCUAAACAUCA	chr3:52725345-52725562(+)$1	217	109	128	12.1122
GUGUUUUCUGUUGAACACU	chr14:95999616-95999820(-)$1	204	94	113	12.8043
UUGAUCUUAUUUGAUCGGA	chr1:109642835-109643059(+)$1	224	155	174	12.8043
UCUCAAAACAAAUUGAGAU	chr2:207026940-207027150(+)$1	210	178	197	12.8043
AGCUGUGUGCUAACAACUG	chr11:75115443-75115706(+)$1	263	240	259	11.5357
GGGAGAAAUGAGUUUCUGG	chr20:47895395-47895614(+)$1	219	17	36	11.3935
UGCUAUUCUCCUGUAGCAG	chr3:186505079-186505292(+)$1	213	98	117	12.8043
GAUCUUGCCCUAAACAUCA	chr3:52725295-52725539(+)$1	244	159	178	12.1122
uguguguguguguACGCAC	chr11:93454851-93455063(+)$1	212	3	22	12.2240
CUGGUUGUAGGGAACUAGC	chr7:98479333-98479538(+)$1	205	106	125	10.7108
UCUCAAAACAAAUUGAGAU	chr2:207026969-207027181(+)$1	212	149	168	12.8043
CGUCGGGGUUGGCUGGUGA	chr22:39709755-39709969(-)$1	214	14	33	12.8043
UCUCCUCUAGGUAGGUUGC	chr7:103131079-103131335(-)$1	256	211	230	11.2016
cugggcgcggcggcucacg	chr17:2233484-2233691(-)$1	207	179	198	11.3179
UCUCAGGCUCAACGAGUUC	chr6:31803000-31803204(+)$1	204	122	141	10.4052
AUAGCUAAAUGGAGCUAUU	chr1:76255108-76255312(+)$1	204	168	187	10.2931
GGCUCUAAGAGGAGAGCCU	chr2:21235935-21236182(-)$1	247	196	215	12.8043
CUGGUUGUAGGGAACUAGC	chr7:98479308-98479511(+)$1	203	131	150	10.7108
ACUGUUAACACAAACACCU	chr2:207026907-207027112(+)$1	205	110	129	10.0186
UACGACUCAAAUGUGGCCU	chr20:47897145-47897356(+)$1	211	59	78	10.4188
GUGUUUUCUGUUGAACACU	chr14:95999666-95999869(-)$1	203	143	162	12.8043
CUGUCUCUAACAGGACACA	chr12:9225291-9225519(-)$1	228	39	58	11.1466
AUUGUGCUUGAACACAAUG	chr11:17096108-17096330(-)$1	222	142	161	12.2156
UUGAUCUUAUUUGAUCGGA	chr1:109642901-109643102(+)$1	201	89	108	12.8043
GAUCUUGCCCUAAACAUCA	chr3:52725339-52725545(+)$1	206	115	134	12.1122
GAGGCAUAAAUUUGUUUGU	chr6:160479844-160480079(+)$1	235	49	68	11.2377
CAUUGCUGAAAUGCAGUGU	chr10:70514854-70515082(+)$1	228	101	120	11.6237
GCCCUGGUGUCACAGAGGC	chr2:216239843-216240107(-)$1	264	141	160	11.4645
UCUGGGACUGUACCUGCAU	chr2:216298029-216298271(-)$1	242	168	187	10.6102
UCACCAUUUAAUUGGUAUC	chr4:119200308-119200510(+)$1	202	121	140	10.4380
UCGAGCUCCUCUGCUCCCG	chr4:53578778-53578991(+)$1	213	30	49	10.3333
GGGGUGUUUCUCCACCCCU	chr10:101996814-101997032(-)$1	218	198	217	12.8043
AGCUGAAGUUUAUCAUUCC	chr2:21245678-21245959(-)$1	281	202	221	11.5668
AUUAAGUGAAUCUUUAAUU	chr2:29136491-29136705(+)$1	214	151	170	10.2931
CCUAGGAAAAUGUCUGGGU	chr1:28905193-28905424(-)$1	231	164	183	11.6237
GUGCCUUCUAUUAGGCCAU	chr7:98479351-98479555(+)$1	204	110	129	9.8370
GCAAUGAUGACCCACUUGC	chr1:31421858-31422130(-)$1	272	85	104	10.8384
CCUCCGUGUCUGUGGAGUU	chr2:21245776-21246010(-)$1	234	121	140	11.0063
UUAUUAUUUAGUUUUUGAA	chr2:216289725-216289930(-)$1	205	151	170	10.6198
GAUGCUGGACUUGGUAUCU	chr12:9243905-9244124(-)$1	219	181	200	12.8043
GGUCCGUGUUUCUGAACCA	chr15:66795506-66795721(-)$1	215	95	114	10.1950
AGGGAUCUAGGUAUGCCAU	chr20:2634793-2635017(+)$1	224	151	170	10.2463
GCCGUUCCAGCCAAUGGCC	chr2:216241200-216241433(-)$1	233	140	159	11.4057
gacagagagagacucuguc	chr8:124446611-124446908(+)$1	297	232	251	7.6009
UCUCAAAACAAAUUGAGAU	chr2:207026950-207027156(+)$1	206	168	187	12.8043
AAAAAUAAUAUAAUUUUUC	chr12:9254115-9254363(-)$1	248	63	82	10.9642
AUAGCUAAAUGGAGCUAUU	chr1:76255097-76255308(+)$1	211	179	198	10.2931
GUGAAAAACACAUUUCACC	chr13:27829102-27829313(+)$1	211	138	157	10.5064
CUUAUGGUAAGACAUGACC	chr2:216243810-216244022(-)$1	212	164	183	10.7219

#DB
.(((((......)))))..	chr9:136216892-136217097(+)$1	1	87	106	10.2607
((((((......)))))).	chr1:28833967-28834174(+)$1	1	3	22	10.7108
((((.(......).)))))	chr1:155889621-155889826(-)$1	1	81	100	11.4107
(((.((......)).))))	chr3:52725345-52725562(+)$1	1	109	128	12.1122
((((((......)))))))	chr14:95999616-95999820(-)$1	1	94	113	12.8043
((((((......)))))))	chr1:109642835-109643059(+)$1	1	155	174	12.8043
((((((......)))))))	chr2:207026940-207027150(+)$1	1	178	197	12.8043
((.(((......))).)))	chr11:75115443-75115706(+)$1	1	240	259	11.5357
.(((((......))))).)	chr20:47895395-47895614(+)$1	1	17	36	11.3935
((((((......)))))))	chr3:186505079-186505292(+)$1	1	98	117	12.8043
(((.((......)).))))	chr3:52725295-52725539(+)$1	1	159	178	12.1122
((((((......)))))))	chr11:93454851-93455063(+)$1	1	3	22	12.2240
((((((......)))))).	chr7:98479333-98479538(+)$1	1	106	125	10.7108
((((((......)))))))	chr2:207026969-207027181(+)$1	1	149	168	12.8043
((((((......)))))))	chr22:39709755-39709969(-)$1	1	14	33	12.8043
(..(((......)))..))	chr7:103131079-103131335(-)$1	1	211	230	11.2016
((((((......))))).)	chr17:2233484-2233691(-)$1	1	179	198	11.3179
.(((.(......))))...	chr6:31803000-31803204(+)$1	1	122	141	10.4052
((((((......)))))))	chr1:76255108-76255312(+)$1	1	168	187	10.2931
((((((......)))))))	chr2:21235935-21236182(-)$1	1	196	215	12.8043
((((((......)))))).	chr7:98479308-98479511(+)$1	1	131	150	10.7108
..((((......))))..)	chr2:207026907-207027112(+)$1	1	110	129	10.0186
(((.((......)).)...	chr20:47897145-47897356(+)$1	1	59	78	10.4188
((((((......)))))))	chr14:95999666-95999869(-)$1	1	143	162	12.8043
.(((((......))))).)	chr12:9225291-9225519(-)$1	1	39	58	11.1466
((((((......)))))))	chr11:17096108-17096330(-)$1	1	142	161	12.2156
((((((......)))))))	chr1:109642901-109643102(+)$1	1	89	108	12.8043
(((.((......)).))))	chr3:52725339-52725545(+)$1	1	115	134	12.1122
(((.((......)))))))	chr6:160479844-160480079(+)$1	1	49	68	11.2377
((((((......)))))).	chr10:70514854-70515082(+)$1	1	101	120	11.6237
((((((......))).)))	chr2:216239843-216240107(-)$1	1	141	160	11.4645
(.((((......)))).))	chr2:216298029-216298271(-)$1	1	168	187	10.6102
..((((......))))..)	chr4:119200308-119200510(+)$1	1	121	140	10.4380
..((((......))))..)	chr4:53578778-53578991(+)$1	1	30	49	10.3333
((((((......)))))))	chr10:101996814-101997032(-)$1	1	198	217	12.8043
((.(((......)))...)	chr2:21245678-21245959(-)$1	1	202	221	11.5668
((((((......)))))))	chr2:29136491-29136705(+)$1	1	151	170	10.2931
((((((......)))))).	chr1:28905193-28905424(-)$1	1	164	183	11.6237
(.((((......)))))))	chr7:98479351-98479555(+)$1	1	110	129	9.8370
((((((......)).))))	chr1:31421858-31422130(-)$1	1	85	104	10.8384
.(((((......)))))))	chr2:21245776-21246010(-)$1	1	121	140	11.0063
(((..(......)..))))	chr2:216289725-216289930(-)$1	1	151	170	10.6198
((((((......)))))))	chr12:9243905-9244124(-)$1	1	181	200	12.8043
(((.((......)).))))	chr15:66795506-66795721(-)$1	1	95	114	10.1950
.((.((......)).)).)	chr20:2634793-2635017(+)$1	1	151	170	10.2463
((((((......)))))).	chr2:216241200-216241433(-)$1	1	140	159	11.4057
(((((((.....)))))))	chr8:124446611-124446908(+)$1	1	232	251	7.6009
((((((......)))))))	chr2:207026950-207027156(+)$1	1	168	187	12.8043
((((((......)))))).	chr12:9254115-9254363(-)$1	1	63	82	10.9642
((((((......)))))))	chr1:76255097-76255308(+)$1	1	179	198	10.2931
((((((......)))))))	chr13:27829102-27829313(+)$1	1	138	157	10.5064
.(((((......)))))))	chr2:216243810-216244022(-)$1	1	164	183	10.7219

#PSSM
g : 0.30	f : 0.21	c : 0.09	h : 0.05	d : 0.05	! : 0.05	[ : 0.03	" : 0.03	e : 0.03	& : 0.01	i : 0.01	% : 0.01	# : 0.01	= : 0.01	
g : 0.30	f : 0.21	e : 0.15	c : 0.05	! : 0.05	h : 0.05	d : 0.03	[ : 0.03	i : 0.01	" : 0.01	= : 0.01	b : 0.01	
g : 0.30	f : 0.19	e : 0.15	d : 0.11	h : 0.05	[ : 0.03	c : 0.03	i : 0.01	! : 0.01	a : 0.01	= : 0.01	b : 0.01	
g : 0.24	f : 0.17	e : 0.13	[ : 0.13	c : 0.09	d : 0.09	h : 0.05	i : 0.01	= : 0.01	! : 0.01	
g : 0.24	f : 0.15	b : 0.15	e : 0.11	d : 0.09	c : 0.07	h : 0.05	[ : 0.03	i : 0.01	= : 0.01	! : 0.01	
g : 0.24	f : 0.15	b : 0.15	e : 0.11	d : 0.09	c : 0.07	a : 0.05	h : 0.05	i : 0.01	= : 0.01	
o : 0.98	g : 0.01	
o : 0.98	n : 0.01	
o : 0.98	n : 0.01	
o : 0.98	n : 0.01	
o : 0.98	n : 0.01	
o : 0.98	n : 0.01	
g : 0.24	f : 0.15	b : 0.15	e : 0.11	d : 0.09	c : 0.07	a : 0.05	h : 0.05	i : 0.01	= : 0.01	
g : 0.24	f : 0.15	b : 0.15	e : 0.11	c : 0.09	d : 0.09	h : 0.05	] : 0.01	i : 0.01	= : 0.01	2 : 0.01	
g : 0.24	f : 0.19	] : 0.13	e : 0.11	c : 0.09	d : 0.09	h : 0.05	i : 0.01	= : 0.01	2 : 0.01	
g : 0.30	f : 0.19	e : 0.15	d : 0.11	h : 0.05	] : 0.03	i : 0.01	2 : 0.01	c : 0.01	a : 0.01	= : 0.01	3 : 0.01	b : 0.01	
g : 0.30	f : 0.19	e : 0.15	2 : 0.07	h : 0.05	c : 0.03	4 : 0.03	d : 0.03	i : 0.01	= : 0.01	] : 0.01	3 : 0.01	b : 0.01	
g : 0.30	f : 0.19	2 : 0.07	c : 0.07	] : 0.07	h : 0.05	e : 0.05	4 : 0.03	d : 0.03	i : 0.01	= : 0.01	3 : 0.01	b : 0.01	
g : 0.30	c : 0.11	e : 0.09	d : 0.07	: : 0.05	f : 0.05	h : 0.05	2 : 0.03	4 : 0.03	] : 0.03	a : 0.01	i : 0.01	= : 0.01	9 : 0.01	C : 0.01	b : 0.01	

#score	589.3917127368678
#seq	52
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_CDS_m2_run2.txt

#BEAR
ccc!!bbxxxxxxxxxxxxxxxbb22ccc:::::BBYYDD	chr14:39649897-39650168(+)$1	271	124	164	35.9951
^^^^^^^^^^^^^^^^^^^^^ccc333bb:::::::::::	chr14:73569859-73570141(+)$1	282	148	188	36.3753

#otherMatches

#Seq PSSM
cugagguaagggaaagugagaagcagcaggaUAGUCAGCC	chr14:39649897-39650168(+)$1	271	124	164	35.9951
gaacgagaaagggaaagagaacgugaacgagaaaaggaga	chr14:73569859-73570141(+)$1	282	148	188	36.3753

#DB
(((..((...............))..))).....))..))	chr14:39649897-39650168(+)$1	1	124	164	35.9951
.....................)))...))...........	chr14:73569859-73570141(+)$1	1	148	188	36.3753

#PSSM
c : 0.50	^ : 0.50	
c : 0.50	^ : 0.50	
c : 0.50	^ : 0.50	
! : 0.50	^ : 0.50	
! : 0.50	^ : 0.50	
b : 0.50	^ : 0.50	
b : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	^ : 0.50	
x : 0.50	c : 0.50	
b : 0.50	c : 0.50	
b : 0.50	c : 0.50	
2 : 0.50	3 : 0.50	
2 : 0.50	3 : 0.50	
c : 0.50	3 : 0.50	
c : 0.50	b : 0.50	
c : 0.50	b : 0.50	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
B : 0.50	: : 0.50	
B : 0.50	: : 0.50	
Y : 0.50	: : 0.50	
Y : 0.50	: : 0.50	
D : 0.50	: : 0.50	
D : 0.50	: : 0.50	

#score	72.37057765090003
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_UTR_m1_run1.txt

#BEAR
ggggggg^^^^^^^^^^^^^^^^^^^^gggggggd	chr3:42661594-42661848(+)$1	254	185	220	10.2181
hhhhhhhh!!bbrrrrrrrrrbb22hhhhhhhh::	chr19:1272658-1272912(+)$1	254	32	67	10.8487
ggggggggggg[bbpppppppbbggggggg22ggg	chr1:21070045-21070256(-)$1	211	134	169	11.6051
fccc"""a[ffffffooooooffffff]a4444cc	chr2:192543056-192543310(+)$1	254	110	145	9.5405
ggggggg####ddddooooooddddggggggg]dd	chr2:61150208-61150459(+)$1	251	181	216	9.6918
==========vvvvvvvvvvvvv==========::	chr12:102110910-102111220(+)$1	310	4	39	13.5037
eeeee!!eeeeerrrrrrrrreeeee22eeeee::	chr10:69828093-69828334(-)$1	241	145	180	10.8185
ddddddddwwwwwwwwwwwwwwdddd]dddd22cc	chr12:11183763-11184048(-)$1	285	12	47	12.2574
dddgggggggbb[bbmmmmbbbb]ggggggg22dd	chr11:61133853-61134110(+)$1	257	135	170	10.1627
ffffff####bbrrrrrrrrrbbffffff>>>>>>	chr12:69885201-69885451(+)$1	250	148	183	13.4677
cc[ggggggg!!a[ammmma]a22ggggggg]ccc	chr19:8467487-8467707(+)$1	220	71	106	9.6301
fff==========ppppppp==========333ff	chr2:86250644-86250882(-)$1	238	45	80	12.8458
eeedddd[bbbbrrrrrrrrrbb]bb]dddd22ee	chr14:75598950-75599205(-)$1	255	146	181	15.1288
b[ccceeeeebbrrrrrrrrrbb]eeeee777777	chr2:188409231-188409472(-)$1	241	136	171	11.5711
eeegggggggbb[bbmmmmbbbb]ggggggg22ee	chr10:72637484-72637739(+)$1	255	136	171	10.7759
eeeeeggggggg!!ccclllccc]ggggggg22ee	chr20:43560099-43560339(+)$1	240	84	119	10.8388
eeegggggggbb[aooooooabb]ggggggg22ee	chr17:39847956-39848216(+)$1	260	149	184	14.8437
ggg[hhhhhhhhrrrrrrrrrhhhhhhhh4444gg	chr1:236714015-236714229(-)$1	214	94	129	12.2048
fff[dddd!!bbrrrrrrrrrbb22dddd]fffff	chr1:151171022-151171299(+)$1	277	136	171	13.4946
[dddd[ccc[cccpppppppccc]ccc]dddd]dd	chr7:48003353-48003605(-)$1	252	6	41	9.8593
eeedddd[bbbb[aooooooabb]bb]dddd22ee	chr4:38945625-38945853(+)$1	228	113	148	12.2622
a[dddd[ddddrrrrrrrrrdddd]dddd]a22dd	chr14:23444938-23445157(-)$1	219	81	116	11.9808
ggg[hhhhhhhhrrrrrrrrrhhhhhhhh4444gg	chr1:236714029-236714244(-)$1	215	109	144	12.2048
eeeee!!eeeeerrrrrrrrreeeee22eeeee::	chr10:69828134-69828346(-)$1	212	157	192	10.8185
bb[===========oooooo===========]bb:	chr19:54972099-54972331(+)$1	232	185	220	10.7340
ccc!!ffffffwwwwwwwwwwwwwwffffff]ccc	chr16:2316044-2316311(-)$1	267	154	189	12.3278
dddgggggggccc[ammmmaccc]ggggggg22dd	chr19:8467452-8467687(+)$1	235	143	178	10.7779
fffdddd"""bbrrrrrrrrrbb333dddd]ffff	chr6:149980424-149980699(-)$1	275	177	212	13.9401
[eeeee"""bb[aooooooa]bb4444eeeee]gg	chr17:25634704-25634983(+)$1	279	71	106	11.1576
==========uuuuuuuuuuuu==========a[f	chr16:23477142-23477368(-)$1	226	85	120	13.3304
gggg[eeeeewwwwwwwwwwwwwweeeee]ggggg	chr15:67486026-67486281(+)$1	255	21	56	13.2771
ccc!!gggggggooooooggggggg333ccc22bb	chr6:24173050-24173316(-)$1	266	173	208	10.1282
dgggggggbb[cccmmmmcccbb]ggggggg22dd	chr20:39987683-39987947(+)$1	264	141	176	10.1123
eeee"""cccwwwwwwwwwwwwwwccc]eeeeeHH	chr12:79978791-79979048(-)$1	257	159	194	11.9136
==========vvvvvvvvvvvvv============	chr4:175239118-175239364(+)$1	246	9	44	15.0316
fffgggggggbb[annnnna]bb]ggggggg22ff	chr1:21101332-21101587(-)$1	255	142	177	11.9792
eeedddd[bbbb[aooooooabb]bb]dddd22ee	chr4:38945602-38945825(+)$1	223	136	171	12.2622
gggggggcccssssssssssccc]ggggggg333f	chr17:7757846-7758110(+)$1	264	221	256	12.8630
dddd:gggggggrrrrrrrrrgggggggggggggg	chr17:30705761-30706005(+)$1	244	111	146	13.0793
c"""bb[eeeeerrrrrrrrreeeeebbccc]a::	chr19:5909419-5909658(+)$1	239	143	178	10.0509
ddd[a"""ccc[bbpppppppbb333ccc4444a]	chr6:158438354-158438601(+)$1	247	141	176	10.5459
eeeeffffffbbrrrrrrrrrbb]ffffff22eee	chr12:133348981-133349216(-)$1	235	118	153	14.8940
eeegggggggbb[bbmmmmbbbb]ggggggg22ee	chr7:44102784-44103063(+)$1	279	148	183	10.7759
bbbgggggggbbrrrrrrrrrbb]ggggggg22bb	chr6:33269243-33269454(-)$1	211	135	170	16.3049
ee==========rrrrrrrrr==========22ee	chr12:125610417-125610674(+)$1	257	135	170	16.9228
!ffffffzzzzzzzzzzzzzzzzzffffff333cc	chr19:54972202-54972445(+)$1	243	67	102	9.3519
eeebb[ddddbbrrrrrrrrrbb]dddd]bb22ee	chr22:41324116-41324375(+)$1	259	143	178	14.1941
"===========ppppppp===========333dd	chr17:7477148-7477415(+)$1	267	196	231	12.4890
eeeeffffffbbrrrrrrrrrbb]ffffff22eee	chr12:133349016-133349232(-)$1	216	134	169	14.8940
iii!!bbbb[cccpppppppccc]bb]bb333iii	chr9:94056682-94056936(-)$1	254	49	84	9.7420
fffff[eeeeevvvvvvvvvvvvveeeeeffffff	chr2:192542928-192543188(+)$1	260	43	78	11.7323
==[dddd[a!!cccooooooccc22adddd=====	chr15:93443709-93443983(+)$1	274	65	100	10.2046
eeee!!eeeeerrrrrrrrreeeee22eeeee]bb	chr5:179265531-179265777(-)$1	246	157	192	11.8756
ffff[eeeeebbrrrrrrrrrbb]eeeee22ffff	chr2:173461748-173462000(+)$1	252	135	170	13.9823

#otherMatches

#Seq PSSM
CUUUGAAUAAAAGUUGAAAUUUCGUUUUUCAAAGG	chr3:42661594-42661848(+)$1	254	185	220	10.2181
UUUUUUGACCACGAGCCAUGAGUUUUCAAAAAAAU	chr19:1272658-1272912(+)$1	254	32	67	10.8487
gagugcaguggugugaucuuggcucacugcaaacu	chr1:21070045-21070256(-)$1	211	134	169	11.6051
CAGUGCUGUCCGGGCUGGUUUGCCCGGUCCCUGAC	chr2:192543056-192543310(+)$1	254	110	145	9.5405
UGUCUUUAAAAUGUUAAGUUGGGCAGAAGGCAGUU	chr2:61150208-61150459(+)$1	251	181	216	9.6918
aaauauuuuaaaaauaaauCCAGUAAAAUGUUUUA	chr12:102110910-102111220(+)$1	310	4	39	13.5037
ucacugcagccuccaccucccagguucaagugauu	chr10:69828093-69828334(-)$1	241	145	180	10.8185
guggcuccauuuuugaagucagggagaccacgaac	chr12:11183763-11184048(-)$1	285	12	47	12.2574
gagugcaguggcgugaucucagcucacugcaaccu	chr11:61133853-61134110(+)$1	257	135	170	10.1627
agcucaccacggucuugaacuccugggcucaagcg	chr12:69885201-69885451(+)$1	250	148	183	13.4677
ucggggcaggauggauuuuugcucuuugcccaggc	chr19:8467487-8467707(+)$1	220	71	106	9.6301
aguggaauugcuggaucauaugguaauucuuuaau	chr2:86250644-86250882(-)$1	238	45	80	12.8458
gagugcaauggcacuaucucagcucgcugcaaccu	chr14:75598950-75599205(-)$1	255	146	181	15.1288
gagcgcaguggcacaaucucagcucacugaaaccu	chr2:188409231-188409472(-)$1	241	136	171	11.5711
gagugcaguggcaugaucucagcucacugcaaccu	chr10:72637484-72637739(+)$1	255	136	171	10.7759
ggagugcagugacaccaucuuggcucgcugcaaac	chr20:43560099-43560339(+)$1	240	84	119	10.8388
gagugcaguggcacaaucucggcucacugcaaccu	chr17:39847956-39848216(+)$1	260	149	184	14.8437
UGUUGGGUGCCAUGUUACUUUUGGUGCCUUAAUAC	chr1:236714015-236714229(-)$1	214	94	129	12.2048
UGGUCUGGGCGCAAGGUCCCAGCAGCCAGCUUAAG	chr1:151171022-151171299(+)$1	277	136	171	13.4946
UUUGGCUUUUUCAUGUUUUUUGAUAAAACCAGUGU	chr7:48003353-48003605(-)$1	252	6	41	9.8593
gagugcguuggcacaaucucggcucacugcaaccu	chr4:38945625-38945853(+)$1	228	113	148	12.2622
GUCuucuuuuuuuuuuuuuugagauggagucucac	chr14:23444938-23445157(-)$1	219	81	116	11.9808
UGUUGGGUGCCAUGUUACUUUUGGUGCCUUAAUAC	chr1:236714029-236714244(-)$1	215	109	144	12.2048
ucacugcagccuccaccucccagguucaagugauu	chr10:69828134-69828346(-)$1	212	157	192	10.8185
CGUUUUUAUUUUUUGCCUCAGAGGGAUGGGAUUGG	chr19:54972099-54972331(+)$1	232	185	220	10.7340
CCACAUUGGUGUGCUGUGUCCUCCUUACCAACUGG	chr16:2316044-2316311(-)$1	267	154	189	12.3278
gagugugguggcucgaucucagcuuacugcaaccu	chr19:8467452-8467687(+)$1	235	143	178	10.7779
gggggcucacgcaguccucccgccucagccuccca	chr6:149980424-149980699(-)$1	275	177	212	13.9401
GCAGCAAUAUUGGUGUGAUUGAGGUUAUGCUGGCA	chr17:25634704-25634983(+)$1	279	71	106	11.1576
GUGUGGCuuuuuuuuguuuuuugaggccauaucuc	chr16:23477142-23477368(-)$1	226	85	120	13.3304
UGACCAUGGUGAUUAUUUUUUUAAACCAUCGUUAA	chr15:67486026-67486281(+)$1	255	21	56	13.2771
cuccuggguucaagcaccugagccucccgaguagc	chr6:24173050-24173316(-)$1	266	173	208	10.1282
gugcaguggcaugaucucucggcucacugcaaccu	chr20:39987683-39987947(+)$1	264	141	176	10.1123
AGGAGAAGCCUCAGCAUGGACAUUGGCAUCCUGAC	chr12:79978791-79979048(-)$1	257	159	194	11.9136
UAUGGUCCUCAAGUUUAGACCAAGAGGACUAUGGU	chr4:175239118-175239364(+)$1	246	9	44	15.0316
gagugcaguggcgcgaucugggcucacugcaaccu	chr1:21101332-21101587(-)$1	255	142	177	11.9792
gagugcguuggcacaaucucggcucacugcaaccu	chr4:38945602-38945825(+)$1	223	136	171	12.2622
AUUUUUGUGUGAGaauauuaauauuaaaaauaaaC	chr17:7757846-7758110(+)$1	264	221	256	12.8630
UGAACCAUCCUAAUCUGAUAGUAGGAUGUAUGGCU	chr17:30705761-30706005(+)$1	244	111	146	13.0793
uaacugcaaccuccgccucccagguucaagcgauu	chr19:5909419-5909658(+)$1	239	143	178	10.0509
cagugcaauggcgcgaucucggcucaccacaaccu	chr6:158438354-158438601(+)$1	247	141	176	10.5459
gagugcaguggcacacucuccgcucacugcaagcu	chr12:133348981-133349216(-)$1	235	118	153	14.8940
gagugcaguggcacgaucuuggcucacugcaaccu	chr7:44102784-44103063(+)$1	279	148	183	10.7759
cagugcaguggcaugaucuuggcuuacugcaaccu	chr6:33269243-33269454(-)$1	211	135	170	16.3049
agugcagugggugcgaucucagcucacugcaaccu	chr12:125610417-125610674(+)$1	257	135	170	16.9228
ACAGAGAUUUUUCUACGUUUUUAUUUUUUGCCUCA	chr19:54972202-54972445(+)$1	243	67	102	9.3519
gagugcaguggcguaaucucagcucacuacaaccu	chr22:41324116-41324375(+)$1	259	143	178	14.1941
AGGGUCACCCCCUUAUGUCGGGGGUGGCCUGGCCU	chr17:7477148-7477415(+)$1	267	196	231	12.4890
gagugcaguggcacacucuccgcucacugcaagcu	chr12:133349016-133349232(-)$1	216	134	169	14.8940
cacugucuauggcagcuauagccuuaugaaaugug	chr9:94056682-94056936(-)$1	254	49	84	9.7420
GUGAGCGGGACUCAGGGCAGAAGUGUCCCCUCACU	chr2:192542928-192543188(+)$1	260	43	78	11.7323
AAGCAGCCGUACUGAGAGCCCAGGUCGUUGUUUUU	chr15:93443709-93443983(+)$1	274	65	100	10.2046
cacugcaaccucugccucccagguucaagugauuc	chr5:179265531-179265777(-)$1	246	157	192	11.8756
gaguacaguggcauggucaaggcucacugcagcuu	chr2:173461748-173462000(+)$1	252	135	170	13.9823

#DB
(((((((....................)))))))(	chr3:42661594-42661848(+)$1	1	185	220	10.2181
((((((((..((.........))..))))))))..	chr19:1272658-1272912(+)$1	1	32	67	10.8487
(((((((((((.((.......)))))))))..)))	chr1:21070045-21070256(-)$1	1	134	169	11.6051
)(((...(.((((((......)))))).)....))	chr2:192543056-192543310(+)$1	1	110	145	9.5405
(((((((....((((......))))))))))).))	chr2:61150208-61150459(+)$1	1	181	216	9.6918
((((((((((.............))))))))))..	chr12:102110910-102111220(+)$1	1	4	39	13.5037
(((((..(((((.........)))))..)))))..	chr10:69828093-69828334(-)$1	1	145	180	10.8185
((((((((..............)))).))))..))	chr12:11183763-11184048(-)$1	1	12	47	12.2574
((((((((((((.((....)))).)))))))..))	chr11:61133853-61134110(+)$1	1	135	170	10.1627
((((((....((.........))))))))......	chr12:69885201-69885451(+)$1	1	148	183	13.4677
((.(((((((..(.(....).)..))))))).)))	chr19:8467487-8467707(+)$1	1	71	106	9.6301
(((((((((((((.......))))))))))...))	chr2:86250644-86250882(-)$1	1	45	80	12.8458
(((((((.((((.........)).)).))))..))	chr14:75598950-75599205(-)$1	1	146	181	15.1288
(.((((((((((.........)).)))))......	chr2:188409231-188409472(-)$1	1	136	171	11.5711
((((((((((((.((....)))).)))))))..))	chr10:72637484-72637739(+)$1	1	136	171	10.7759
((((((((((((..(((...))).)))))))..))	chr20:43560099-43560339(+)$1	1	84	119	10.8388
((((((((((((.(......))).)))))))..))	chr17:39847956-39848216(+)$1	1	149	184	14.8437
(((.((((((((.........))))))))....))	chr1:236714015-236714229(-)$1	1	94	129	12.2048
(((.((((..((.........))..)))).)))))	chr1:151171022-151171299(+)$1	1	136	171	13.4946
.((((.(((.(((.......))).))).)))).))	chr7:48003353-48003605(-)$1	1	6	41	9.8593
(((((((.((((.(......))).)).))))..))	chr4:38945625-38945853(+)$1	1	113	148	12.2622
(.((((.((((.........)))).)))).)..))	chr14:23444938-23445157(-)$1	1	81	116	11.9808
(((.((((((((.........))))))))....))	chr1:236714029-236714244(-)$1	1	109	144	12.2048
(((((..(((((.........)))))..)))))..	chr10:69828134-69828346(-)$1	1	157	192	10.8185
((.(((((((((((......))))))))))).)).	chr19:54972099-54972331(+)$1	1	185	220	10.7340
(((..((((((..............)))))).)))	chr16:2316044-2316311(-)$1	1	154	189	12.3278
(((((((((((((.(....)))).)))))))..))	chr19:8467452-8467687(+)$1	1	143	178	10.7779
(((((((...((.........))...)))).))))	chr6:149980424-149980699(-)$1	1	177	212	13.9401
.(((((...((.(......).))....))))).))	chr17:25634704-25634983(+)$1	1	71	106	11.1576
((((((((((............))))))))))(.(	chr16:23477142-23477368(-)$1	1	85	120	13.3304
((((.(((((..............))))).)))))	chr15:67486026-67486281(+)$1	1	21	56	13.2771
(((..(((((((......)))))))...)))..))	chr6:24173050-24173316(-)$1	1	173	208	10.1282
((((((((((.(((....))))).)))))))..))	chr20:39987683-39987947(+)$1	1	141	176	10.1123
((((...(((..............))).)))))))	chr12:79978791-79979048(-)$1	1	159	194	11.9136
((((((((((.............))))))))))))	chr4:175239118-175239364(+)$1	1	9	44	15.0316
((((((((((((.(.....).)).)))))))..))	chr1:21101332-21101587(-)$1	1	142	177	11.9792
(((((((.((((.(......))).)).))))..))	chr4:38945602-38945825(+)$1	1	136	171	12.2622
((((((((((..........))).)))))))...)	chr17:7757846-7758110(+)$1	1	221	256	12.8630
)))).(((((((.........)))))))(((((((	chr17:30705761-30706005(+)$1	1	111	146	13.0793
(...((.(((((.........)))))))))).)..	chr19:5909419-5909658(+)$1	1	143	178	10.0509
(((.(...(((.((.......))...)))....).	chr6:158438354-158438601(+)$1	1	141	176	10.5459
((((((((((((.........)).))))))..)))	chr12:133348981-133349216(-)$1	1	118	153	14.8940
((((((((((((.((....)))).)))))))..))	chr7:44102784-44103063(+)$1	1	148	183	10.7759
((((((((((((.........)).)))))))..))	chr6:33269243-33269454(-)$1	1	135	170	16.3049
((((((((((((.........))))))))))..))	chr12:125610417-125610674(+)$1	1	135	170	16.9228
.((((((.................))))))...))	chr19:54972202-54972445(+)$1	1	67	102	9.3519
(((((.((((((.........)).)))).))..))	chr22:41324116-41324375(+)$1	1	143	178	14.1941
.(((((((((((.......)))))))))))...))	chr17:7477148-7477415(+)$1	1	196	231	12.4890
((((((((((((.........)).))))))..)))	chr12:133349016-133349232(-)$1	1	134	169	14.8940
(((..((((.(((.......))).)).))...)))	chr9:94056682-94056936(-)$1	1	49	84	9.7420
(((((.(((((.............)))))))))))	chr2:192542928-192543188(+)$1	1	43	78	11.7323
((.((((.(..(((......)))..))))))))))	chr15:93443709-93443983(+)$1	1	65	100	10.2046
((((..(((((.........)))))..))))).))	chr5:179265531-179265777(-)$1	1	157	192	11.8756
((((.(((((((.........)).)))))..))))	chr2:173461748-173462000(+)$1	1	135	170	13.9823

#PSSM
e : 0.27	f : 0.14	g : 0.12	d : 0.11	= : 0.07	c : 0.07	b : 0.05	[ : 0.03	h : 0.01	a : 0.01	! : 0.01	" : 0.01	i : 0.01	
e : 0.29	g : 0.14	f : 0.14	d : 0.11	= : 0.09	c : 0.07	[ : 0.03	b : 0.03	h : 0.01	" : 0.01	i : 0.01	
e : 0.27	g : 0.14	f : 0.14	d : 0.12	= : 0.09	c : 0.07	[ : 0.05	h : 0.01	" : 0.01	b : 0.01	i : 0.01	
g : 0.25	d : 0.16	e : 0.14	= : 0.12	f : 0.07	[ : 0.07	! : 0.05	c : 0.03	h : 0.01	" : 0.01	b : 0.01	
g : 0.24	d : 0.16	= : 0.12	f : 0.09	e : 0.07	! : 0.07	h : 0.05	" : 0.03	[ : 0.03	b : 0.03	c : 0.01	: : 0.01	a : 0.01	
g : 0.29	d : 0.14	= : 0.12	f : 0.09	e : 0.07	h : 0.05	" : 0.05	! : 0.05	[ : 0.05	b : 0.03	
g : 0.29	d : 0.14	= : 0.12	e : 0.09	" : 0.07	f : 0.07	h : 0.05	! : 0.03	[ : 0.03	# : 0.01	c : 0.01	b : 0.01	
g : 0.24	e : 0.14	= : 0.12	d : 0.07	[ : 0.07	h : 0.05	c : 0.05	f : 0.05	" : 0.05	# : 0.03	^ : 0.01	a : 0.01	z : 0.01	b : 0.01	
g : 0.22	e : 0.14	= : 0.12	b : 0.09	c : 0.07	f : 0.05	! : 0.03	# : 0.03	h : 0.03	d : 0.03	" : 0.03	^ : 0.01	[ : 0.01	w : 0.01	z : 0.01	a : 0.01	
g : 0.22	e : 0.14	= : 0.12	b : 0.09	f : 0.07	! : 0.05	c : 0.05	# : 0.03	h : 0.03	[ : 0.03	d : 0.03	^ : 0.01	w : 0.01	" : 0.01	z : 0.01	
b : 0.35	e : 0.09	g : 0.07	= : 0.07	c : 0.07	w : 0.05	f : 0.03	v : 0.03	! : 0.03	h : 0.03	^ : 0.01	# : 0.01	d : 0.01	u : 0.01	[ : 0.01	s : 0.01	z : 0.01	
b : 0.33	c : 0.09	w : 0.07	= : 0.07	[ : 0.05	v : 0.05	e : 0.05	g : 0.05	h : 0.03	r : 0.03	^ : 0.01	f : 0.01	d : 0.01	! : 0.01	u : 0.01	s : 0.01	z : 0.01	
r : 0.37	[ : 0.12	c : 0.09	w : 0.07	v : 0.05	b : 0.03	a : 0.03	= : 0.03	^ : 0.01	f : 0.01	d : 0.01	! : 0.01	u : 0.01	o : 0.01	s : 0.01	z : 0.01	p : 0.01	
r : 0.37	b : 0.09	w : 0.07	p : 0.07	a : 0.07	v : 0.05	[ : 0.03	o : 0.03	c : 0.03	^ : 0.01	f : 0.01	d : 0.01	! : 0.01	= : 0.01	u : 0.01	s : 0.01	z : 0.01	
r : 0.37	o : 0.12	p : 0.11	w : 0.07	v : 0.05	b : 0.05	a : 0.03	^ : 0.01	f : 0.01	d : 0.01	c : 0.01	u : 0.01	m : 0.01	n : 0.01	s : 0.01	z : 0.01	
r : 0.37	o : 0.16	p : 0.11	m : 0.11	w : 0.07	v : 0.05	^ : 0.01	c : 0.01	u : 0.01	n : 0.01	s : 0.01	z : 0.01	
r : 0.37	o : 0.16	p : 0.11	m : 0.11	w : 0.07	v : 0.05	^ : 0.01	c : 0.01	u : 0.01	n : 0.01	s : 0.01	z : 0.01	
r : 0.37	o : 0.16	p : 0.11	m : 0.11	w : 0.07	v : 0.05	^ : 0.01	l : 0.01	u : 0.01	n : 0.01	s : 0.01	z : 0.01	
r : 0.37	o : 0.14	p : 0.11	m : 0.09	w : 0.07	v : 0.05	^ : 0.01	l : 0.01	u : 0.01	g : 0.01	c : 0.01	n : 0.01	s : 0.01	z : 0.01	
r : 0.37	o : 0.12	p : 0.09	w : 0.07	a : 0.07	v : 0.05	b : 0.05	^ : 0.01	l : 0.01	u : 0.01	g : 0.01	c : 0.01	s : 0.01	z : 0.01	= : 0.01	
r : 0.33	c : 0.12	w : 0.07	v : 0.05	b : 0.05	] : 0.05	= : 0.05	a : 0.05	p : 0.03	o : 0.03	^ : 0.01	d : 0.01	u : 0.01	g : 0.01	z : 0.01	e : 0.01	
b : 0.40	c : 0.11	e : 0.07	w : 0.07	= : 0.07	v : 0.05	d : 0.03	h : 0.03	g : 0.03	^ : 0.01	f : 0.01	a : 0.01	u : 0.01	z : 0.01	
b : 0.40	c : 0.11	= : 0.09	e : 0.07	d : 0.05	v : 0.05	w : 0.05	h : 0.03	g : 0.03	^ : 0.01	f : 0.01	2 : 0.01	z : 0.01	
] : 0.37	= : 0.12	2 : 0.07	e : 0.07	g : 0.05	d : 0.05	w : 0.05	f : 0.03	h : 0.03	3 : 0.03	^ : 0.01	4 : 0.01	z : 0.01	v : 0.01	
g : 0.25	e : 0.14	= : 0.12	f : 0.09	b : 0.07	2 : 0.05	d : 0.05	h : 0.03	c : 0.03	3 : 0.03	^ : 0.01	] : 0.01	w : 0.01	4 : 0.01	
g : 0.25	= : 0.12	e : 0.12	f : 0.11	d : 0.07	b : 0.07	h : 0.05	3 : 0.05	c : 0.03	^ : 0.01	4 : 0.01	a : 0.01	2 : 0.01	
g : 0.25	= : 0.12	f : 0.11	] : 0.09	d : 0.09	e : 0.07	h : 0.05	2 : 0.05	c : 0.05	^ : 0.01	4 : 0.01	3 : 0.01	b : 0.01	
g : 0.27	d : 0.16	= : 0.12	e : 0.11	f : 0.09	h : 0.05	] : 0.05	2 : 0.03	b : 0.03	3 : 0.01	c : 0.01	
g : 0.27	e : 0.16	d : 0.16	= : 0.12	f : 0.09	h : 0.05	c : 0.05	a : 0.01	] : 0.01	b : 0.01	
g : 0.27	= : 0.12	d : 0.12	e : 0.09	f : 0.09	4 : 0.07	] : 0.05	c : 0.03	h : 0.01	> : 0.01	7 : 0.01	b : 0.01	3 : 0.01	2 : 0.01	
g : 0.27	= : 0.11	e : 0.09	d : 0.09	2 : 0.07	4 : 0.07	3 : 0.07	f : 0.05	c : 0.03	h : 0.01	> : 0.01	7 : 0.01	a : 0.01	] : 0.01	b : 0.01	
2 : 0.37	e : 0.09	3 : 0.09	g : 0.07	4 : 0.07	= : 0.07	] : 0.07	f : 0.07	h : 0.01	> : 0.01	7 : 0.01	d : 0.01	
2 : 0.31	e : 0.09	g : 0.07	4 : 0.07	] : 0.07	3 : 0.07	f : 0.07	= : 0.05	c : 0.03	a : 0.03	h : 0.01	> : 0.01	7 : 0.01	b : 0.01	i : 0.01	
e : 0.20	g : 0.12	d : 0.12	f : 0.11	: : 0.09	c : 0.09	b : 0.07	= : 0.03	> : 0.01	7 : 0.01	[ : 0.01	H : 0.01	3 : 0.01	a : 0.01	i : 0.01	
e : 0.20	d : 0.14	f : 0.14	: : 0.11	g : 0.11	c : 0.09	b : 0.05	= : 0.03	> : 0.01	7 : 0.01	H : 0.01	] : 0.01	i : 0.01	

#score	651.4503309506276
#seq	54
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF121XLA_HNRNPA1_transcript_m1_run1.txt

#BEAR
eeee[bb[ddddnnnnnddddbb]e	chrX:132979402-132979647(-)$1	245	17	42	9.5843
gg[a####ddddnnnnndddda]gg	chrX:70767303-70767583(+)$1	280	209	234	11.0877
ffffff[cccbbnnnnnbb333ccc	chr14:23448929-23449206(-)$1	277	59	84	9.4831
[ccc"""eeeeennnnneeeee333	chr17:64214169-64214471(-)$1	302	92	117	11.0811
ddddiiiiiiiiimmmmiiiiiiii	chr3:186336687-186336933(+)$1	246	115	140	9.2764
============nnnnn========	chr3:48754004-48754218(-)$1	214	131	156	14.8254
eeee[bb[ddddnnnnnddddbb]e	chrX:132979447-132979702(-)$1	255	72	97	9.5843
e[iiiiiiiiiooooooiiiiiiii	chr5:27481714-27481967(+)$1	253	40	65	12.6325
a[iiiiiiiiiooooooiiiiiiii	chr11:2704730-2704983(-)$1	253	145	170	12.7355
"""gggggggrrrrrrrrrgggggg	chr21:46195684-46195916(-)$1	232	131	156	9.3572
ccc!!ccc[cccoooooocccccc2	chr19:57346153-57346415(-)$1	262	196	221	10.0619
"""gggggggrrrrrrrrrgggggg	chr21:46195725-46195929(-)$1	204	144	169	9.3572
c"""gggggggooooooggggggg3	chr3:30734709-30734974(+)$1	265	74	99	11.3304
ccc!!ccc[bboooooobb]ccc22	chr2:11721588-11721850(+)$1	262	108	133	8.9521
ffff[gggggggnnnnnggggggg]	chr11:2702699-2702958(-)$1	259	159	184	11.6067
============nnnnn========	chr12:53435280-53435522(+)$1	242	11	36	14.8254
iiiiiiiiicccnnnnnccc]iiii	chr14:23793866-23794079(+)$1	213	55	80	13.1412
gggggg[eeeeeooooooeeeee22	chr11:2719371-2719609(-)$1	238	116	141	9.6207
==========bbnnnnnbb]=====	chr8:17764917-17765169(-)$1	252	106	131	13.1670
============nnnnn========	chr3:48754018-48754254(-)$1	236	167	192	14.8254
ggggggbb[cccooooooccc]bb]	chrX:133034328-133034621(-)$1	293	147	172	9.8832
ggggggg[ddddnnnnnddddgggg	chrX:133022745-133023066(-)$1	321	237	262	11.5358
b==========ammmma]=======	chr2:21265585-21265836(-)$1	251	190	215	11.3294
###ccc!!ddddnnnnndddd22cc	chrX:133045283-133045535(-)$1	252	182	207	10.7473
=======!!cccooooooccc22==	chrX:133019010-133019282(-)$1	272	28	53	12.1169
!!eeeee[ddddnnnnndddd]eee	chr11:65272424-65272644(+)$1	220	157	182	10.3476
dddd!!ffffffnnnnnffffff]d	chr17:53361182-53361438(+)$1	256	106	131	9.1349
!!eeeee[ddddnnnnndddd]eee	chr11:65272445-65272652(+)$1	207	136	161	10.3476
"""gggggggrrrrrrrrrgggggg	chr21:46195716-46195925(-)$1	209	140	165	9.3572
==========oooooo=========	chr20:47900500-47900810(+)$1	310	121	146	12.7176
bb[iiiiiiiiinnnnniiiiiiii	chr8:22272775-22273036(+)$1	261	34	59	13.0974
h!!bb!!ccc[annnnna]ccc22b	chr2:11724203-11724478(+)$1	275	224	249	10.3415
g[==========mmmm=========	chr16:50585423-50585679(+)$1	256	207	232	11.8580
eeeeegggggggnnnnnggggggg2	chr2:198284105-198284401(-)$1	296	224	249	11.2353
!eeeee[eeeeennnnneeeee]ee	chr11:65269113-65269334(+)$1	221	168	193	9.9396
::==========mmmm=========	chr5:27483566-27483840(+)$1	274	14	39	9.5825
==========rrrrrrrrr======	chrX:133082985-133083239(-)$1	254	42	67	10.9932
gg[ccc"""cccnnnnnccc4444c	chr11:65271594-65271816(+)$1	222	89	114	11.5604
!!iiiiiiiiiooooooiiiiiiii	chr16:50617784-50618085(+)$1	301	126	151	12.9582
#ffffff[ddddoooooodddd]ff	chrX:132886520-132886838(-)$1	318	264	289	8.8716
##==========mmmm=========	chr11:65270601-65270813(+)$1	212	110	135	11.9099
##==========mmmm=========	chr11:65270568-65270801(+)$1	233	143	168	11.9099
FF:iiiiiiiiinnnnniiiiiiii	chr11:65192493-65192770(+)$1	277	77	102	11.4018
ffff"""eeeeennnnneeeee333	chr2:42397674-42397941(+)$1	267	73	98	10.5826
[dddd[ffffffnnnnnffffff]d	chrX:133028984-133029229(-)$1	245	110	135	9.1632
e[dddd"""cccooooooccc333d	chrX:132992328-132992595(-)$1	267	227	252	10.2262
========[cccooooooccc]===	chr8:121822230-121822512(-)$1	282	226	251	12.7786

#otherMatches

#Seq PSSM
CACAGUCUCCUAAAUUCUAGGGAAU	chrX:132979402-132979647(-)$1	245	17	42	9.5843
CUGAACAUGGUGGUUUGCACUUGGG	chrX:70767303-70767583(+)$1	280	209	234	11.0877
GCUUUGAUCAAGGAAGACUGAAUGA	chr14:23448929-23449206(-)$1	277	59	84	9.4831
gcuuaguuugauacuuagucaguug	chr17:64214169-64214471(-)$1	302	92	117	11.0811
uggccaggcaugauggcucaugccu	chr3:186336687-186336933(+)$1	246	115	140	9.2764
AAUGCCAUUUGGGCCCGUCAGAUGG	chr3:48754004-48754218(-)$1	214	131	156	14.8254
CACAGUCUCCUAAAUUCUAGGGAAU	chrX:132979447-132979702(-)$1	255	72	97	9.5843
AUAUAUAGUAGUUACUGUUACUAUA	chr5:27481714-27481967(+)$1	253	40	65	12.6325
UAUUUGAAAUGAGUUGGCAUUUCAG	chr11:2704730-2704983(-)$1	253	145	170	12.7355
AUCACACGCUGUCUACUUGAGUGUG	chr21:46195684-46195916(-)$1	232	131	156	9.3572
UCUACUGAAUGGAAACUCCCAUCAC	chr19:57346153-57346415(-)$1	262	196	221	10.0619
AUCACACGCUGUCUACUUGAGUGUG	chr21:46195725-46195929(-)$1	204	144	169	9.3572
GAAUGUGGGACACAAAGGUCCCAUU	chr3:30734709-30734974(+)$1	265	74	99	11.3304
AGGGAGCUGUGAACGGGCGGAGCAA	chr2:11721588-11721850(+)$1	262	108	133	8.9521
GGAAGUUACUCUAGAAAAGGGUAAG	chr11:2702699-2702958(-)$1	259	159	184	11.6067
UGUUUUUUUAAGCUUCCCUUGAGAG	chr12:53435280-53435522(+)$1	242	11	36	14.8254
GAUCCUCCCCAACAGCCUUGUGGGA	chr14:23793866-23794079(+)$1	213	55	80	13.1412
UUAUCACAAAGUAUAAAAACUUUCC	chr11:2719371-2719609(-)$1	238	116	141	9.6207
UGUAAGUUAAACAUAGAGUAUUAGC	chr8:17764917-17765169(-)$1	252	106	131	13.1670
AAUGCCAUUUGGGCCCGUCAGAUGG	chr3:48754018-48754254(-)$1	236	167	192	14.8254
GCUCUGACUCUUAAGAAAAAGUGUG	chrX:133034328-133034621(-)$1	293	147	172	9.8832
CAUGUAUAGUUCCUUAUGAACAUAC	chrX:133022745-133023066(-)$1	321	237	262	11.5358
CCAGAGGGUCUCUCAUGCAGAUUUU	chr2:21265585-21265836(-)$1	251	190	215	11.3294
AUAUAGACGUGAUCuguucacaacu	chrX:133045283-133045535(-)$1	252	182	207	10.7473
CCCAGUGCUGCAGUGAAUUGUUACA	chrX:133019010-133019282(-)$1	272	28	53	12.1169
GGCAUGUGAGCAAACUGUGUUGGCG	chr11:65272424-65272644(+)$1	220	157	182	10.3476
ACUUGCCAGUCUGUUUAGGAUUGAA	chr17:53361182-53361438(+)$1	256	106	131	9.1349
GGCAUGUGAGCAAACUGUGUUGGCG	chr11:65272445-65272652(+)$1	207	136	161	10.3476
AUCACACGCUGUCUACUUGAGUGUG	chr21:46195716-46195925(-)$1	209	140	165	9.3572
cagagagauaggccaguaucuuucu	chr20:47900500-47900810(+)$1	310	121	146	12.7176
CAUGCAGUUAUUCCCUAAAUAGCUG	chr8:22272775-22273036(+)$1	261	34	59	13.0974
UGAGCAUGCUGUUGUCUAGAGUGGG	chr2:11724203-11724478(+)$1	275	224	249	10.3415
ucuuuuuuuuuuuaccagaaaaaaa	chr16:50585423-50585679(+)$1	256	207	232	11.8580
GUGAUGCUAUACUACUUGUAUAGCU	chr2:198284105-198284401(-)$1	296	224	249	11.2353
AUAAUGUGACUUCUUAAAAGUUUUA	chr11:65269113-65269334(+)$1	221	168	193	9.9396
ACUAUGAAAGAUUGGAGUCUUUCAU	chr5:27483566-27483840(+)$1	274	14	39	9.5825
uggacuuggagucagaaaauccaag	chrX:133082985-133083239(-)$1	254	42	67	10.9932
GUAUGAGACCUUGCAGUGAGUUUAU	chr11:65271594-65271816(+)$1	222	89	114	11.5604
GUGCAGUUGGCAUAucaguuagcug	chr16:50617784-50618085(+)$1	301	126	151	12.9582
GCUGCCAGCUUUGUAGAAGGAGGUG	chrX:132886520-132886838(-)$1	318	264	289	8.8716
UUUUUAAGAGCUGUGGAGUUCUUAA	chr11:65270601-65270813(+)$1	212	110	135	11.9099
UUUUUAAGAGCUGUGGAGUUCUUAA	chr11:65270568-65270801(+)$1	233	143	168	11.9099
CUAAUUAAUAAUAGUAAGUUGUUAG	chr11:65192493-65192770(+)$1	277	77	102	11.4018
ACUAUUCUUCGAGGCCAUUGAAAUC	chr2:42397674-42397941(+)$1	267	73	98	10.5826
GUGGUCUGGugauuccuucacuaua	chrX:133028984-133029229(-)$1	245	110	135	9.1632
aucucuuuucuagcuggauggccca	chrX:132992328-132992595(-)$1	267	227	252	10.2262
GAUUUAAGCCCUAAACUAAGGACUU	chr8:121822230-121822512(-)$1	282	226	251	12.7786

#DB
((((.((.((((.....)))))).)	chrX:132979402-132979647(-)$1	1	17	42	9.5843
((.(....((((.....))))).))	chrX:70767303-70767583(+)$1	1	209	234	11.0877
((((((.(((((.....))...)))	chr14:23448929-23449206(-)$1	1	59	84	9.4831
.(((...(((((.....)))))...	chr17:64214169-64214471(-)$1	1	92	117	11.0811
))))(((((((((....))))))))	chr3:186336687-186336933(+)$1	1	115	140	9.2764
((((((((((((.....))))))))	chr3:48754004-48754218(-)$1	1	131	156	14.8254
((((.((.((((.....)))))).)	chrX:132979447-132979702(-)$1	1	72	97	9.5843
(.(((((((((......))))))))	chr5:27481714-27481967(+)$1	1	40	65	12.6325
(.(((((((((......))))))))	chr11:2704730-2704983(-)$1	1	145	170	12.7355
...(((((((.........))))))	chr21:46195684-46195916(-)$1	1	131	156	9.3572
(((..(((.(((......)))))).	chr19:57346153-57346415(-)$1	1	196	221	10.0619
...(((((((.........))))))	chr21:46195725-46195929(-)$1	1	144	169	9.3572
(...(((((((......))))))).	chr3:30734709-30734974(+)$1	1	74	99	11.3304
(((..(((.((......)).)))..	chr2:11721588-11721850(+)$1	1	108	133	8.9521
((((.(((((((.....))))))).	chr11:2702699-2702958(-)$1	1	159	184	11.6067
((((((((((((.....))))))))	chr12:53435280-53435522(+)$1	1	11	36	14.8254
((((((((((((.....))).))))	chr14:23793866-23794079(+)$1	1	55	80	13.1412
((((((.(((((......)))))..	chr11:2719371-2719609(-)$1	1	116	141	9.6207
((((((((((((.....)).)))))	chr8:17764917-17765169(-)$1	1	106	131	13.1670
((((((((((((.....))))))))	chr3:48754018-48754254(-)$1	1	167	192	14.8254
((((((((.(((......))).)).	chrX:133034328-133034621(-)$1	1	147	172	9.8832
(((((((.((((.....))))))))	chrX:133022745-133023066(-)$1	1	237	262	11.5358
((((((((((((....).)))))))	chr2:21265585-21265836(-)$1	1	190	215	11.3294
...(((..((((.....))))..))	chrX:133045283-133045535(-)$1	1	182	207	10.7473
(((((((..(((......)))..))	chrX:133019010-133019282(-)$1	1	28	53	12.1169
..(((((.((((.....)))).)))	chr11:65272424-65272644(+)$1	1	157	182	10.3476
((((..((((((.....)))))).)	chr17:53361182-53361438(+)$1	1	106	131	9.1349
..(((((.((((.....)))).)))	chr11:65272445-65272652(+)$1	1	136	161	10.3476
...(((((((.........))))))	chr21:46195716-46195925(-)$1	1	140	165	9.3572
((((((((((......)))))))))	chr20:47900500-47900810(+)$1	1	121	146	12.7176
((.(((((((((.....))))))))	chr8:22272775-22273036(+)$1	1	34	59	13.0974
(..((..(((.(.....).)))..)	chr2:11724203-11724478(+)$1	1	224	249	10.3415
(.((((((((((....)))))))))	chr16:50585423-50585679(+)$1	1	207	232	11.8580
((((((((((((.....))))))).	chr2:198284105-198284401(-)$1	1	224	249	11.2353
.(((((.(((((.....))))).))	chr11:65269113-65269334(+)$1	1	168	193	9.9396
..((((((((((....)))))))))	chr5:27483566-27483840(+)$1	1	14	39	9.5825
((((((((((.........))))))	chrX:133082985-133083239(-)$1	1	42	67	10.9932
((.(((...(((.....)))....)	chr11:65271594-65271816(+)$1	1	89	114	11.5604
..(((((((((......))))))))	chr16:50617784-50618085(+)$1	1	126	151	12.9582
.((((((.((((......)))).))	chrX:132886520-132886838(-)$1	1	264	289	8.8716
..((((((((((....)))))))))	chr11:65270601-65270813(+)$1	1	110	135	11.9099
..((((((((((....)))))))))	chr11:65270568-65270801(+)$1	1	143	168	11.9099
((.(((((((((.....))))))))	chr11:65192493-65192770(+)$1	1	77	102	11.4018
((((...(((((.....)))))...	chr2:42397674-42397941(+)$1	1	73	98	10.5826
.((((.((((((.....)))))).)	chrX:133028984-133029229(-)$1	1	110	135	9.1632
(.((((...(((......)))...)	chrX:132992328-132992595(-)$1	1	227	252	10.2262
((((((((.(((......))).)))	chr8:121822230-121822512(-)$1	1	226	251	12.7786

#PSSM
= : 0.17	g : 0.12	e : 0.10	# : 0.08	! : 0.08	f : 0.06	" : 0.06	c : 0.06	[ : 0.04	d : 0.04	b : 0.04	a : 0.02	i : 0.02	h : 0.02	: : 0.02	F : 0.02	
= : 0.19	g : 0.10	e : 0.08	f : 0.08	[ : 0.08	" : 0.08	! : 0.08	c : 0.06	d : 0.06	# : 0.06	i : 0.02	b : 0.02	: : 0.02	F : 0.02	
= : 0.27	e : 0.12	f : 0.08	d : 0.08	i : 0.08	" : 0.08	[ : 0.06	c : 0.06	g : 0.06	# : 0.02	! : 0.02	: : 0.02	
= : 0.27	e : 0.12	i : 0.12	g : 0.12	f : 0.08	d : 0.08	c : 0.06	! : 0.04	a : 0.02	" : 0.02	b : 0.02	
= : 0.27	i : 0.14	g : 0.14	e : 0.08	[ : 0.06	! : 0.06	f : 0.04	" : 0.04	c : 0.04	d : 0.04	# : 0.02	b : 0.02	
= : 0.27	g : 0.19	i : 0.14	c : 0.08	e : 0.06	b : 0.04	f : 0.04	" : 0.04	! : 0.04	# : 0.02	[ : 0.02	d : 0.02	
= : 0.27	i : 0.14	g : 0.14	" : 0.08	b : 0.06	[ : 0.06	f : 0.06	c : 0.04	! : 0.04	e : 0.04	# : 0.02	
= : 0.25	i : 0.14	[ : 0.12	g : 0.12	c : 0.08	e : 0.08	! : 0.04	f : 0.04	" : 0.04	# : 0.02	b : 0.02	
= : 0.23	d : 0.17	i : 0.14	g : 0.12	e : 0.08	[ : 0.08	c : 0.04	f : 0.04	" : 0.04	! : 0.02	
= : 0.23	c : 0.19	d : 0.17	i : 0.12	g : 0.12	e : 0.08	f : 0.04	b : 0.02	
d : 0.17	= : 0.17	c : 0.14	i : 0.12	e : 0.08	r : 0.08	b : 0.06	g : 0.06	f : 0.04	o : 0.02	[ : 0.02	
d : 0.17	= : 0.14	c : 0.14	o : 0.12	e : 0.08	r : 0.08	i : 0.06	b : 0.04	g : 0.04	a : 0.04	f : 0.04	
n : 0.51	o : 0.27	m : 0.10	r : 0.08	i : 0.02	
n : 0.51	o : 0.27	m : 0.12	r : 0.08	
n : 0.51	o : 0.27	m : 0.12	r : 0.08	
n : 0.51	o : 0.27	m : 0.12	r : 0.08	
n : 0.51	o : 0.25	= : 0.10	r : 0.08	m : 0.02	a : 0.02	
= : 0.17	d : 0.14	o : 0.14	i : 0.12	r : 0.08	b : 0.06	e : 0.06	g : 0.06	c : 0.04	f : 0.04	] : 0.02	a : 0.02	
= : 0.19	d : 0.17	c : 0.14	i : 0.12	e : 0.08	r : 0.08	b : 0.06	g : 0.06	f : 0.04	] : 0.02	
= : 0.21	d : 0.17	c : 0.17	i : 0.12	g : 0.12	e : 0.08	] : 0.04	f : 0.04	3 : 0.02	
= : 0.23	d : 0.17	c : 0.14	i : 0.12	g : 0.12	e : 0.08	f : 0.04	3 : 0.02	] : 0.02	4 : 0.02	
= : 0.23	i : 0.14	g : 0.14	e : 0.08	] : 0.08	c : 0.06	b : 0.04	3 : 0.04	2 : 0.04	f : 0.04	a : 0.02	4 : 0.02	d : 0.02	
= : 0.25	i : 0.14	g : 0.14	b : 0.06	] : 0.06	c : 0.06	3 : 0.06	e : 0.06	2 : 0.06	f : 0.04	4 : 0.02	
= : 0.27	g : 0.17	i : 0.14	] : 0.08	c : 0.06	3 : 0.06	2 : 0.06	e : 0.06	b : 0.02	4 : 0.02	f : 0.02	
= : 0.27	i : 0.14	e : 0.10	g : 0.10	2 : 0.08	c : 0.06	3 : 0.06	d : 0.06	] : 0.04	b : 0.02	f : 0.02	

#score	522.4653249810469
#seq	47
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_CDS_m1_run2.txt

#BEAR
cc[a!!dddd"""cccmmmmccc4444dddda]cc	chr2:220435706-220435980(-)$1	274	188	223	12.1961
hhhhhhhhh"""ddddoooooodddd333hhhhhh	chr17:79803647-79803853(-)$1	206	60	95	12.3315
dddd!!ccc"""ddddoooooodddd333ccc22d	chr1:19490652-19490888(-)$1	236	20	55	14.4684
ddd"""ccc####ddddssssssssssdddd333c	chr9:116931317-116931552(+)$1	235	68	103	10.1762
ddd[dddd$$$$$cccnnnnnccc333dddd]ddd	chr20:60913049-60913287(-)$1	238	183	218	11.5631
e####ggggggg[cccnnnnncccggggggg22ee	chr20:60913524-60913760(-)$1	236	43	78	11.1563
=========####cccooooooccc22========	chr11:67810715-67811052(+)$1	337	283	318	17.4246
ggg[cccxxxxxxxxxxxxxxxccc22ggggggge	chrX:128645800-128646041(-)$1	241	81	116	10.0598
)=========="""bboooooobb]==========	chr9:116930028-116930252(+)$1	224	17	52	14.8581
!!cccdddd####bb[bblllbbbb333dddd]cc	chr20:43029850-43030149(+)$1	299	150	185	11.0514
gggggg####ffffffooooooffffff4444ggg	chr19:51857296-51857633(-)$1	337	197	232	11.5614
mmcccddddccc!!bboooooobb]ccc]dddddd	chr1:19474425-19474680(-)$1	255	146	181	11.0545
ffff!!ccc"""ddddoooooodddd]ccc22fff	chr20:60885227-60885462(-)$1	235	136	171	14.1353
[ccc[hhhhhhhhcccooooooccc]hhhhhhhhc	chr14:101200385-101200611(+)$1	226	84	119	11.3797
ffff!!ccc!!ccc[annnnna]ccccccffffff	chr11:130013183-130013419(+)$1	236	128	163	10.5995
ddd####bb!!ddddoooooodddd22bb]dddd]	chr2:27606290-27606569(-)$1	279	125	160	11.6353
dd[a!!iiiiiiiiirrrrrrrrriiiiiiiii22	chr9:116958164-116958379(+)$1	215	53	88	11.8037
cccdddd!!ddddcccooooooccc]dddd22ddd	chr1:245018788-245019011(-)$1	223	161	196	12.7229
f!!eeeee!!ccc!!cccmmmmccc22ccc22eee	chr2:232325089-232325303(-)$1	214	164	199	10.0574
ccccc!!a!!cccrrrrrrrrrccc22a22ccc]c	chr20:62904670-62905013(+)$1	343	189	224	11.9833
iiiii!!ccc####bboooooobb22ccc22iiii	chr1:245027002-245027293(-)$1	291	27	62	15.0697
::==============oooooo=============	chr8:124381215-124381517(-)$1	302	53	88	13.1627
bb[ccc[bb"""ddddrrrrrrrrrddddbb]ccc	chr22:36690062-36690303(-)$1	241	96	131	10.8266
gg"""dddd####ddddmmmmdddd]ddddggggg	chr1:35652573-35652833(-)$1	260	214	249	11.2839
d####dddd####cccqqqqqqqqccc333dddd6	chr5:138661102-138661446(+)$1	344	122	157	11.3596
a[ccc[dddd"""ddddllldddd333ddddccc]	chr3:49722141-49722410(-)$1	269	171	206	12.1158
eeeeeeeee####cccxxxxxxxxxxxxxxxccc4	chr1:19452997-19453249(-)$1	252	8	43	9.9902
ee!!bb[agggggggcccmmmmccc333ggggggg	chr14:23792136-23792370(+)$1	234	93	128	10.2460
###dddd!!ccc[cccooooooccc]ccc]dddde	chr16:2813911-2814152(+)$1	241	174	209	13.7915
c"""eeeee####cccqqqqqqqqccc333eeeee	chr7:103276709-103276944(-)$1	235	41	76	11.5445
b[ggggggg####ccclllccc4444ggggggg]b	chr12:49666601-49666860(+)$1	259	175	210	12.3203
"""ccc[ccc"""ddddlllddddcccccc333dd	chr3:48456292-48456542(-)$1	250	192	227	12.0235
ccc!!eeeee[bbcccooooooccc]bb]eeeee]	chr20:31022371-31022647(+)$1	276	132	167	13.0768
bbiiiiiiiii[bbrrrrrrrrrbbiiiiiiiii]	chr9:116994001-116994239(+)$1	238	135	170	11.0943
ggggggg####bb[bboooooobbbb333gggggg	chr2:54874193-54874494(+)$1	301	227	262	13.4943
e$$$$$dddd!!ddddoooooodddd]ddddeeee	chr2:232326498-232326771(-)$1	273	29	64	12.5924
eeee!!dddd!!bbrrrrrrrrrbb22dddd22ee	chr14:102549353-102549619(-)$1	266	38	73	11.1789
:=========="""bboooooobb]==========	chr9:116929961-116930193(+)$1	232	84	119	14.4308
&ffffff[dddd[cccooooooccc]dddd22fff	chr14:102551608-102551860(-)$1	252	167	202	11.8127
bb[bb[a[dddd[cccoooooocccdddd]abbbb	chr3:52836262-52836495(+)$1	233	13	48	11.4927
ddd"""bb[a[cccrrrrrrrrrccc]a]bb]ddd	chr16:28846373-28846609(+)$1	236	110	145	10.8577
f:ggggggg[dddd!!aooooooa22dddd]gggg	chr20:60913185-60913422(-)$1	237	106	141	11.6336
fccceeeee####cccrrrrrrrrrccceeeee22	chr1:245021406-245021671(-)$1	265	18	53	11.7412
GGccc[ffffff[cccoooooocccffffff]ccc	chr11:130011740-130012027(+)$1	287	105	140	11.3717
f:ggggggg[dddd!!aooooooa22dddd]gggg	chr20:60913242-60913494(-)$1	252	178	213	11.6336
ccc!!===========qqqqqqqq===========	chr6:144812014-144812262(+)$1	248	105	140	11.4513
ee####eeeee!!cccooooooccc22eeeee333	chr1:67880748-67881031(-)$1	283	17	52	14.7584
dd[bbcccbb####cccmmmmccc333bb]ccc]b	chr14:102550932-102551190(-)$1	258	88	123	10.6439
eee[ddddccc[ddddoooooodddd]ccc]dddd	chr9:117050890-117051131(+)$1	241	21	56	12.2893
gggg$$$$$bb!!cccooooooccc22bbgggggg	chr1:19484306-19484553(-)$1	247	52	87	13.7813
!!bb!!dddd####bboooooobb22dddd4444b	chr16:30087575-30087857(+)$1	282	183	218	13.8824
ggggg[ccc!!cccqqqqqqqqccc]cccgggggg	chr17:80193762-80194054(+)$1	292	17	52	11.5195
gggggggccc!!ddddoooooodddd333ccc777	chr14:24113938-24114166(+)$1	228	80	115	12.5297
dddd"""ccc[cccqqqqqqqqccc4444ccc333	chr9:116997777-116997990(+)$1	213	154	189	11.0191
cc[ggggggg!!cccqqqqqqqqcccgggggggcc	chr2:54849382-54849624(+)$1	242	119	154	11.2887
"""ccc[ccc####bboooooobb333ccc22ccc	chr10:101603535-101603757(+)$1	222	17	52	15.7513
:::ccc[iiiiiiiiiooooooiiiiiiiii22cc	chr14:39648426-39648640(+)$1	214	144	179	10.7005

#otherMatches

#Seq PSSM
UCGGAACGCCUGAGCUUCCCGGCGGACGGCGCGGA	chr2:220435706-220435980(-)$1	274	188	223	12.1961
UGAAGACGUGGCUUUUGAUGAGAAAAAAAACGUCU	chr17:79803647-79803853(-)$1	206	60	95	12.3315
GCCAACGGUGAUGGGACUGGCUUCCCUGAACUUAU	chr1:19490652-19490888(-)$1	236	20	55	14.4684
CAGAACAGCACCUGCCGUCCCCACUCCUGGCUCAG	chr9:116931317-116931552(+)$1	235	68	103	10.1762
GCCCUGGCUACCAUGGUUUCCCCAACUGCCAAGGU	chr20:60913049-60913287(-)$1	238	183	218	11.5631
GUACUGGGGUCUGCAGGGCAUCUGAGACUCCCCUG	chr20:60913524-60913760(-)$1	236	43	78	11.1563
CAGAGCGGGACCCCAGAGUCAGCUGAGCCUGCUCU	chr11:67810715-67811052(+)$1	337	283	318	17.4246
GGCCUUGGGAAAACUUUACAAACAAUUGCUUUGCU	chrX:128645800-128646041(-)$1	241	81	116	10.0598
CAGUCGGGCUUCAUCUUUACGCAGCGGGCCCGGCU	chr9:116930028-116930252(+)$1	224	17	52	14.8581
GAGGCAGGGAGAAUGCGACUCUCCAAAACCCUCGU	chr20:43029850-43030149(+)$1	299	150	185	11.0514
AUCGCCGUCAGCUGUGGGCCUGCACAGUGCCAGGU	chr19:51857296-51857633(-)$1	337	197	232	11.5614
CUUCUGGCCAGCCUGCACACCAGCCGCUCGGCCUA	chr1:19474425-19474680(-)$1	255	146	181	11.0545
GAGGUGCGGCCCCUGGCAGUCACCGGACUGAUCUU	chr20:60885227-60885462(-)$1	235	136	171	14.1353
CCCUGUUGUGUUGCAGCUCCCCCUGCCAGCACGGA	chr14:101200385-101200611(+)$1	226	84	119	11.3797
CCUACAAAUACCUGGAGCAGAUGCAGAUUUAGGUG	chr11:130013183-130013419(+)$1	236	128	163	10.5995
AGCGGUGGUGGCCCUGAUACGAGGGAAGCAGUUGA	chr2:27606290-27606569(-)$1	279	125	160	11.6353
CACCUUGUCUGUGUCUUCCAGGGUGACAUGGGCUU	chr9:116958164-116958379(+)$1	215	53	88	11.8037
GUGGAGGAAGUGGUGGAAUCGGCUAUCCAUACCCU	chr1:245018788-245019011(-)$1	223	161	196	12.7229
GAAUAACAAAGGGACUUAAUACUGAAACCUGAUGU	chr2:232325089-232325303(-)$1	214	164	199	10.0574
AGACCCCCCAGUGAACUUCCUACGCCAGAAGGUCC	chr20:62904670-62905013(+)$1	343	189	224	11.9833
CGGCCGACUCGGGCCCGAUGGAGGAGGAGGAGGCC	chr1:245027002-245027293(-)$1	291	27	62	15.0697
CCauauauauauauauauacaaauauauauauaua	chr8:124381215-124381517(-)$1	302	53	88	13.1627
GCUGCAGGUCAAGUUCAACGAGGGAGAGCGCGUGC	chr22:36690062-36690303(-)$1	241	96	131	10.8266
AUGAUGGGAAGUGACAUGGUAAUGUAUCCUGUGGG	chr1:35652573-35652833(-)$1	260	214	249	11.2839
GAGAACGCUGAUGAUCCCAACAAAGAUACAAGUGA	chr5:138661102-138661446(+)$1	344	122	157	11.3596
GCGGGUCCCAGUAGCCAAGAUGGUGUGUGGGCCCU	chr3:49722141-49722410(-)$1	269	171	206	12.1158
GUGAGUGUGUUUCCCAUCCCCAACACCCACCUGGA	chr1:19452997-19453249(-)$1	252	8	43	9.9902
UGAGGAGAAGAUGGAGGCUGAUGCCCGUUCCAUCU	chr14:23792136-23792370(+)$1	234	93	128	10.2460
AAUUUAGUCCCUUUCCAGUACAGGAUAGGCCUGAG	chr16:2813911-2814152(+)$1	241	174	209	13.7915
AUUUUCUGGCCCAGCUUGUGAGAUGGCAUCCCAGA	chr7:103276709-103276944(-)$1	235	41	76	11.5445
AGAGCUGUGUGCAUGCUGAGCAAUACCACAGCUGU	chr12:49666601-49666860(+)$1	259	175	210	12.3203
UCCUUGACAACCUGGUCUUUGACUUUGCAACACUG	chr3:48456292-48456542(-)$1	250	192	227	12.0235
CAGCAGUGGUGAUGGUGGUGAGGCCUGUGGCCACC	chr20:31022371-31022647(+)$1	276	132	167	13.0768
AGGUGAUAAGGUGAUCUGAAUACUCCCUUAUUGCA	chr9:116994001-116994239(+)$1	238	135	170	11.0943
GAGACCCGGCUCUCGAUUCCUCUCAGUUAGGGUCU	chr2:54874193-54874494(+)$1	301	227	262	13.4943
CAUUUAUUCUCAAGGUCGUCAUACCUCAGAAGAAA	chr2:232326498-232326771(-)$1	273	29	64	12.5924
CUUAGAAGUGAUCUAUAUGAUUGAGCCCAUUGAUG	chr14:102549353-102549619(-)$1	266	38	73	11.1789
CAGUCGGGCUUCAUCUUUACGCAGCGGGCCCGGCU	chr9:116929961-116930193(+)$1	232	84	119	14.4308
GAAUAAAGGAGAUUGUGAAGAAACAUUCUCAGUUU	chr14:102551608-102551860(-)$1	252	167	202	11.8127
CAUGGAUGCCCAGCUGCAGCAUCAGUGGGAGCCUG	chr3:52836262-52836495(+)$1	233	13	48	11.4927
CAGCCUACCCCCCAAGCCCUUUAUGGUGAGUCCUG	chr16:28846373-28846609(+)$1	236	110	145	10.8577
CGGCUACUUUCACUUCCCUCUCUGCCAGUGUGAGU	chr20:60913185-60913422(-)$1	237	106	141	11.6336
UCCUAAUUUUAAUUCUUAGUUUUUUAGAAAGUUUA	chr1:245021406-245021671(-)$1	265	18	53	11.7412
UCUGAGUAGCAGUGCUCUCAUUGGCCUGCUGGUCA	chr11:130011740-130012027(+)$1	287	105	140	11.3717
CGGCUACUUUCACUUCCCUCUCUGCCAGUGUGAGU	chr20:60913242-60913494(-)$1	252	178	213	11.6336
UCGAGCAGCGCAUGCUGGACUGCAAGCGUGUGCUG	chr6:144812014-144812262(+)$1	248	105	140	11.4513
UGAAGAUUCGGUUAUGGACCAUCAUUUCCGGAAGC	chr1:67880748-67881031(-)$1	283	17	52	14.7584
AAAUCCCGACGAUAUUACUAAUGAGGAGUACGGAG	chr14:102550932-102551190(-)$1	258	88	123	10.6439
CCAACAGGGCCCAGGGCUGGCAUCCUUGGCACCUG	chr9:117050890-117051131(+)$1	241	21	56	12.2893
UCUUUGCCAGGUUCCCACCUUAGGGUCCCAGGAAG	chr1:19484306-19484553(-)$1	247	52	87	13.7813
AAGGAGAGCGAAGUCAAGGCCCUGUGCGCUAAGGC	chr16:30087575-30087857(+)$1	282	183	218	13.8824
CAGCUCGUGUCCCUCCCCUGCCAGGCUGCAGCUGG	chr17:80193762-80194054(+)$1	292	17	52	11.5195
UUCUUCCCUUUGCCCAGUUUCAUGGGAAUGAGUCU	chr14:24113938-24114166(+)$1	228	80	115	12.5297
GGUAAUUGCAUGAGAUUUUCCCCUCCCCCUGCCCC	chr9:116997777-116997990(+)$1	213	154	189	11.0191
UCUGGAAUGGAUUGAACAAACCAUCAUCAUUCUGA	chr2:54849382-54849624(+)$1	242	119	154	11.2887
UAGAUCACACAAACCCUGAACUGGCUGGUGAGGAU	chr10:101603535-101603757(+)$1	222	17	52	15.7513
UAAGAACUAAGACAAAGCCCCAUUUGUUUUAUAUU	chr14:39648426-39648640(+)$1	214	144	179	10.7005

#DB
((.(..((((...(((....)))....))))).))	chr2:220435706-220435980(-)$1	1	188	223	12.1961
(((((((((...((((......))))...))))))	chr17:79803647-79803853(-)$1	1	60	95	12.3315
((((..(((...((((......))))...)))..)	chr1:19490652-19490888(-)$1	1	20	55	14.4684
(((...(((....((((..........))))...)	chr9:116931317-116931552(+)$1	1	68	103	10.1762
(((.((((.....(((.....)))...)))).)))	chr20:60913049-60913287(-)$1	1	183	218	11.5631
(....(((((((.(((.....))))))))))..))	chr20:60913524-60913760(-)$1	1	43	78	11.1563
(((((((((....(((......)))..))))))))	chr11:67810715-67811052(+)$1	1	283	318	17.4246
(((.(((...............)))..)))))))(	chrX:128645800-128646041(-)$1	1	81	116	10.0598
.((((((((((...((......)).))))))))))	chr9:116930028-116930252(+)$1	1	17	52	14.8581
..(((((((....((.((...))))...)))).))	chr20:43029850-43030149(+)$1	1	150	185	11.0514
((((((....((((((......))))))....)))	chr19:51857296-51857633(-)$1	1	197	232	11.5614
..)))(((((((..((......)).))).))))((	chr1:19474425-19474680(-)$1	1	146	181	11.0545
((((..(((...((((......)))).)))..)))	chr20:60885227-60885462(-)$1	1	136	171	14.1353
.(((.(((((((((((......))).)))))))))	chr14:101200385-101200611(+)$1	1	84	119	11.3797
((((..(((..(((.(.....).))))))))))))	chr11:130013183-130013419(+)$1	1	128	163	10.5995
(((....((..((((......))))..)).)))).	chr2:27606290-27606569(-)$1	1	125	160	11.6353
((.(..(((((((((.........)))))))))..	chr9:116958164-116958379(+)$1	1	53	88	11.8037
)))((((..(((((((......))).))))..)))	chr1:245018788-245019011(-)$1	1	161	196	12.7229
(..(((((..(((..(((....)))..)))..)))	chr2:232325089-232325303(-)$1	1	164	199	10.0574
(((((..(..(((.........)))..)..))).)	chr20:62904670-62905013(+)$1	1	189	224	11.9833
(((((..(((....((......))..)))..))))	chr1:245027002-245027293(-)$1	1	27	62	15.0697
..((((((((((((((......)))))))))))))	chr8:124381215-124381517(-)$1	1	53	88	13.1627
((.(((.((...((((.........)))))).)))	chr22:36690062-36690303(-)$1	1	96	131	10.8266
((...((((....((((....)))).)))))))))	chr1:35652573-35652833(-)$1	1	214	249	11.2839
(....((((....(((........)))...)))).	chr5:138661102-138661446(+)$1	1	122	157	11.3596
(.(((.((((...((((...))))...))))))).	chr3:49722141-49722410(-)$1	1	171	206	12.1158
(((((((((....(((...............))).	chr1:19452997-19453249(-)$1	1	8	43	9.9902
((..((.(((((((((((....)))...)))))))	chr14:23792136-23792370(+)$1	1	93	128	10.2460
...((((..(((.(((......))).))).)))))	chr16:2813911-2814152(+)$1	1	174	209	13.7915
(...(((((....(((........)))...)))))	chr7:103276709-103276944(-)$1	1	41	76	11.5445
(.(((((((....(((...)))....))))))).)	chr12:49666601-49666860(+)$1	1	175	210	12.3203
...(((.(((...((((...))))))))))...))	chr3:48456292-48456542(-)$1	1	192	227	12.0235
(((..(((((.(((((......))).)).))))).	chr20:31022371-31022647(+)$1	1	132	167	13.0768
(((((((((((.((.........))))))))))).	chr9:116994001-116994239(+)$1	1	135	170	11.0943
(((((((....((.((......))))...))))))	chr2:54874193-54874494(+)$1	1	227	262	13.4943
(.....((((..((((......)))).))))))))	chr2:232326498-232326771(-)$1	1	29	64	12.5924
((((..((((..((.........))..))))..))	chr14:102549353-102549619(-)$1	1	38	73	11.1789
.((((((((((...((......)).))))))))))	chr9:116929961-116930193(+)$1	1	84	119	14.4308
.((((((.((((.(((......))).))))..)))	chr14:102551608-102551860(-)$1	1	167	202	11.8127
((.((.(.((((.(((......))))))).)))))	chr3:52836262-52836495(+)$1	1	13	48	11.4927
(((...((.(.(((.........))).).)).)))	chr16:28846373-28846609(+)$1	1	110	145	10.8577
).(((((((.((((..(......)..)))).))))	chr20:60913185-60913422(-)$1	1	106	141	11.6336
(((((((((....(((.........))))))))..	chr1:245021406-245021671(-)$1	1	18	53	11.7412
(((((.((((((.(((......))))))))).)))	chr11:130011740-130012027(+)$1	1	105	140	11.3717
).(((((((.((((..(......)..)))).))))	chr20:60913242-60913494(-)$1	1	178	213	11.6336
(((..(((((((((((........)))))))))))	chr6:144812014-144812262(+)$1	1	105	140	11.4513
((....(((((..(((......)))..)))))...	chr1:67880748-67881031(-)$1	1	17	52	14.7584
((.(((((((....(((....)))...)).))).)	chr14:102550932-102551190(-)$1	1	88	123	10.6439
(((.(((((((.((((......)))).))).))))	chr9:117050890-117051131(+)$1	1	21	56	12.2893
((((.....((..(((......)))..))))))))	chr1:19484306-19484553(-)$1	1	52	87	13.7813
..((..((((....((......))..))))....)	chr16:30087575-30087857(+)$1	1	183	218	13.8824
(((((.(((..(((........))).)))))))))	chr17:80193762-80194054(+)$1	1	17	52	11.5195
((((((((((..((((......))))...)))...	chr14:24113938-24114166(+)$1	1	80	115	12.5297
((((...(((.(((........)))....)))...	chr9:116997777-116997990(+)$1	1	154	189	11.0191
((.(((((((..(((........))))))))))))	chr2:54849382-54849624(+)$1	1	119	154	11.2887
...(((.(((....((......))...)))..)))	chr10:101603535-101603757(+)$1	1	17	52	15.7513
...(((.(((((((((......)))))))))..))	chr14:39648426-39648640(+)$1	1	144	179	10.7005

#PSSM
d : 0.15	c : 0.12	e : 0.12	g : 0.12	f : 0.10	b : 0.07	: : 0.05	! : 0.03	" : 0.03	h : 0.01	= : 0.01	) : 0.01	m : 0.01	[ : 0.01	i : 0.01	a : 0.01	# : 0.01	& : 0.01	G : 0.01	
c : 0.14	d : 0.14	g : 0.12	e : 0.08	: : 0.07	# : 0.05	= : 0.05	! : 0.05	f : 0.05	b : 0.05	" : 0.05	[ : 0.03	h : 0.01	m : 0.01	i : 0.01	$ : 0.01	G : 0.01	
c : 0.17	g : 0.15	[ : 0.10	d : 0.10	# : 0.07	= : 0.07	" : 0.07	f : 0.05	e : 0.05	! : 0.03	i : 0.03	h : 0.01	$ : 0.01	b : 0.01	: : 0.01	
c : 0.19	g : 0.15	d : 0.07	" : 0.07	# : 0.07	= : 0.07	[ : 0.05	f : 0.05	e : 0.05	! : 0.05	b : 0.05	a : 0.03	i : 0.03	h : 0.01	$ : 0.01	
c : 0.17	! : 0.15	g : 0.14	" : 0.07	d : 0.07	# : 0.07	= : 0.07	e : 0.07	b : 0.05	i : 0.03	$ : 0.03	h : 0.01	[ : 0.01	f : 0.01	
! : 0.15	d : 0.14	g : 0.14	c : 0.10	= : 0.08	e : 0.08	[ : 0.07	" : 0.05	h : 0.03	# : 0.03	$ : 0.03	b : 0.01	i : 0.01	f : 0.01	
d : 0.22	c : 0.12	g : 0.12	e : 0.10	= : 0.08	[ : 0.08	h : 0.03	# : 0.03	i : 0.03	! : 0.03	f : 0.03	a : 0.01	b : 0.01	$ : 0.01	" : 0.01	
d : 0.19	c : 0.19	e : 0.10	g : 0.08	= : 0.08	b : 0.05	i : 0.05	h : 0.03	# : 0.03	! : 0.03	a : 0.03	[ : 0.03	x : 0.01	f : 0.01	$ : 0.01	
d : 0.19	c : 0.19	g : 0.10	= : 0.08	e : 0.08	! : 0.07	b : 0.05	i : 0.05	h : 0.03	$ : 0.03	# : 0.03	x : 0.01	[ : 0.01	f : 0.01	
# : 0.19	d : 0.14	c : 0.14	! : 0.08	" : 0.07	= : 0.07	g : 0.05	i : 0.05	e : 0.03	[ : 0.03	b : 0.03	$ : 0.01	x : 0.01	h : 0.01	a : 0.01	f : 0.01	
# : 0.24	" : 0.12	! : 0.12	c : 0.08	d : 0.08	= : 0.07	i : 0.05	[ : 0.05	g : 0.03	f : 0.03	$ : 0.01	x : 0.01	h : 0.01	e : 0.01	b : 0.01	
# : 0.22	" : 0.15	c : 0.14	d : 0.10	! : 0.10	g : 0.03	f : 0.03	i : 0.03	= : 0.03	b : 0.03	[ : 0.03	$ : 0.01	x : 0.01	h : 0.01	
# : 0.22	d : 0.19	c : 0.12	" : 0.08	[ : 0.08	b : 0.07	! : 0.05	i : 0.03	= : 0.03	$ : 0.01	x : 0.01	f : 0.01	h : 0.01	g : 0.01	
c : 0.40	d : 0.24	# : 0.07	b : 0.05	" : 0.03	! : 0.03	i : 0.03	= : 0.03	x : 0.01	f : 0.01	r : 0.01	g : 0.01	[ : 0.01	
c : 0.35	d : 0.21	b : 0.14	r : 0.07	! : 0.05	i : 0.03	= : 0.03	q : 0.03	x : 0.01	f : 0.01	[ : 0.01	g : 0.01	
c : 0.36	d : 0.19	b : 0.12	r : 0.08	q : 0.05	= : 0.03	! : 0.03	x : 0.01	[ : 0.01	f : 0.01	a : 0.01	o : 0.01	i : 0.01	
o : 0.47	r : 0.12	q : 0.10	d : 0.07	n : 0.05	c : 0.05	x : 0.03	a : 0.03	m : 0.01	b : 0.01	l : 0.01	
o : 0.50	r : 0.12	q : 0.10	m : 0.05	n : 0.05	l : 0.05	x : 0.03	c : 0.03	s : 0.01	b : 0.01	
o : 0.50	r : 0.12	q : 0.10	m : 0.08	l : 0.07	n : 0.05	x : 0.03	s : 0.01	
o : 0.50	r : 0.12	q : 0.10	m : 0.08	n : 0.05	l : 0.05	x : 0.03	s : 0.01	c : 0.01	
o : 0.50	r : 0.12	q : 0.10	m : 0.07	n : 0.05	c : 0.03	x : 0.03	d : 0.03	s : 0.01	l : 0.01	
o : 0.49	r : 0.12	q : 0.10	c : 0.08	d : 0.07	x : 0.03	m : 0.03	s : 0.01	b : 0.01	a : 0.01	
c : 0.35	d : 0.17	b : 0.14	r : 0.10	q : 0.07	o : 0.03	s : 0.01	f : 0.01	] : 0.01	= : 0.01	x : 0.01	4 : 0.01	i : 0.01	
c : 0.38	d : 0.17	b : 0.17	r : 0.05	q : 0.05	4 : 0.03	a : 0.03	s : 0.01	f : 0.01	= : 0.01	x : 0.01	i : 0.01	
c : 0.38	d : 0.14	3 : 0.07	b : 0.07	2 : 0.07	] : 0.05	4 : 0.03	i : 0.03	= : 0.03	r : 0.03	s : 0.01	g : 0.01	f : 0.01	x : 0.01	
2 : 0.21	d : 0.14	c : 0.14	] : 0.12	3 : 0.10	= : 0.07	4 : 0.05	i : 0.05	f : 0.03	s : 0.01	g : 0.01	x : 0.01	b : 0.01	
3 : 0.17	c : 0.15	2 : 0.14	d : 0.14	= : 0.07	] : 0.07	g : 0.05	i : 0.05	4 : 0.03	f : 0.03	s : 0.01	h : 0.01	x : 0.01	b : 0.01	
d : 0.24	c : 0.19	3 : 0.14	= : 0.08	g : 0.07	b : 0.07	i : 0.05	f : 0.03	a : 0.03	h : 0.01	x : 0.01	e : 0.01	4 : 0.01	
d : 0.26	c : 0.15	3 : 0.10	g : 0.08	= : 0.08	] : 0.05	b : 0.05	i : 0.05	4 : 0.03	e : 0.03	h : 0.01	2 : 0.01	x : 0.01	f : 0.01	
d : 0.24	c : 0.14	g : 0.14	= : 0.08	] : 0.07	i : 0.05	e : 0.05	h : 0.03	f : 0.03	2 : 0.03	b : 0.03	3 : 0.03	4 : 0.01	x : 0.01	
d : 0.19	g : 0.15	2 : 0.10	c : 0.08	= : 0.08	e : 0.07	i : 0.05	] : 0.05	h : 0.03	4 : 0.03	f : 0.03	b : 0.03	x : 0.01	3 : 0.01	a : 0.01	
g : 0.17	2 : 0.14	c : 0.12	d : 0.10	= : 0.08	e : 0.08	] : 0.07	i : 0.05	h : 0.03	3 : 0.03	4 : 0.03	a : 0.01	f : 0.01	b : 0.01	
g : 0.19	d : 0.14	c : 0.12	= : 0.08	e : 0.08	2 : 0.07	3 : 0.07	f : 0.05	i : 0.05	] : 0.03	h : 0.03	b : 0.01	4 : 0.01	7 : 0.01	
c : 0.15	d : 0.15	g : 0.15	e : 0.10	= : 0.08	2 : 0.05	3 : 0.05	f : 0.05	] : 0.05	h : 0.03	i : 0.03	b : 0.01	4 : 0.01	7 : 0.01	
c : 0.17	g : 0.14	d : 0.12	e : 0.12	= : 0.08	] : 0.07	b : 0.07	f : 0.05	2 : 0.03	3 : 0.03	h : 0.01	i : 0.01	6 : 0.01	4 : 0.01	7 : 0.01	

#score	691.981586596194
#seq	57
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_transcript_m2_run1.txt

#BEAR
ddddoooooodddd	chr17:80785693-80785943(+)$1	250	204	218	12.5644
ddddoooooodddd	chr19:49606269-49606545(+)$1	276	14	28	12.5644
"cccooooooccc3	chr8:144892214-144892485(-)$1	271	17	31	10.0950
ddddoooooodddd	chr19:1409150-1409404(+)$1	254	121	135	12.5644
ddddoooooodddd	chr1:1194316-1194585(-)$1	269	46	60	12.5644
eeeeooooooeeee	chr16:2564427-2564712(+)$1	285	132	146	10.4007
ddddoooooodddd	chr17:80785797-80786062(+)$1	265	100	114	12.5644
[cccooooooccc]	chr17:1465468-1465790(-)$1	322	163	177	10.2499
ddddoooooodddd	chr17:80785743-80785972(+)$1	229	154	168	12.5644
fcccooooooccc]	chr21:46864192-46864478(+)$1	286	121	135	10.0755
ddddoooooodddd	chr7:1482071-1482363(-)$1	292	156	170	12.5644
====oooooo====	chr19:13106631-13106939(+)$1	308	208	222	9.9182
ddddoooooodddd	chr3:129612250-129612502(-)$1	252	165	179	12.5644
eeeeooooooeeee	chr22:20040238-20040544(+)$1	306	263	277	10.4007
ddddoooooodddd	chr22:50040901-50041155(-)$1	254	163	177	12.5644
ddddoooooodddd	chr19:2194794-2195026(+)$1	232	117	131	12.5644
ddddoooooodddd	chrX:13333005-13333248(+)$1	243	198	212	12.5644
d[bboooooobb]d	chr16:89031350-89031604(-)$1	254	44	58	9.2948
ddddoooooodddd	chr21:46929101-46929342(-)$1	241	137	151	12.5644
ddddoooooodddd	chr6:158051971-158052360(+)$1	389	334	348	12.5644
dd[aooooooa]dd	chr1:27923247-27923493(-)$1	246	67	81	11.1968
eeeeooooooeeee	chr16:15234740-15235080(-)$1	340	243	257	10.4007
ddddoooooodddd	chr19:2130752-2130978(-)$1	226	32	46	12.5644
ddddoooooodddd	chr11:65389535-65389814(+)$1	279	2	16	12.5644
ggggoooooogggg	chr1:2170774-2171025(+)$1	251	59	73	9.6035
ddddoooooodddd	chr21:46837560-46837825(+)$1	265	47	61	12.5644
[cccoooooocccb	chr22:20051683-20051941(+)$1	258	178	192	10.0285
ddddoooooodddd	chr9:139559649-139559876(+)$1	227	144	158	12.5644
cccaooooooa]cc	chr3:194830026-194830407(-)$1	381	332	346	10.1233
ddddoooooodddd	chr17:27072986-27073257(+)$1	271	188	202	12.5644
ddddoooooodddd	chr13:113539264-113539514(+)$1	250	130	144	12.5644
ddddoooooodddd	chr2:131898265-131898584(+)$1	319	147	161	12.5644
cc[aooooooa]cc	chr22:49851975-49852269(-)$1	294	177	191	10.0066
ddddoooooodddd	chr1:179010723-179011055(+)$1	332	47	61	12.5644
ddddoooooodddd	chr14:73924529-73924802(-)$1	273	140	154	12.5644
ddddoooooodddd	chr13:114561240-114561491(-)$1	251	139	153	12.5644
[cccooooooccc]	chr4:1239052-1239315(-)$1	263	196	210	10.2499
eeeeooooooeeee	chr19:1882357-1882577(-)$1	220	3	17	10.4007
ddddoooooodddd	chr1:1278634-1278888(-)$1	254	138	152	12.5644
ddddoooooodddd	chr19:48984100-48984372(+)$1	272	127	141	12.5644
iiiiooooooiiii	chr9:136136920-136137133(-)$1	213	187	201	9.7373
eeeeooooooeeee	chr11:65346324-65346585(+)$1	261	83	97	10.4007
ddddoooooodddd	chr8:11665766-11666059(+)$1	293	228	242	12.5644
[cccoooooocccb	chr19:49964744-49965010(+)$1	266	143	157	10.0285
d!!aooooooa22d	chr16:89360972-89361227(-)$1	255	146	160	9.9916
eeeeooooooeeee	chr6:109702839-109703169(-)$1	330	156	170	10.4007
ddddoooooodddd	chr19:40737794-40738043(-)$1	249	167	181	12.5644

#otherMatches

#Seq PSSM
cguggacacgcacg	chr17:80785693-80785943(+)$1	250	204	218	12.5644
ACGGGCAGCACCGU	chr19:49606269-49606545(+)$1	276	14	28	12.5644
GGACGUGUGGGUCG	chr8:144892214-144892485(-)$1	271	17	31	10.0950
GGGAAAGGGCUCCC	chr19:1409150-1409404(+)$1	254	121	135	12.5644
acgcacacacgcgu	chr1:1194316-1194585(-)$1	269	46	60	12.5644
GGUGACAUCACACC	chr16:2564427-2564712(+)$1	285	132	146	10.4007
cguggacacgcacg	chr17:80785797-80786062(+)$1	265	100	114	12.5644
gcguggaggggcgg	chr17:1465468-1465790(-)$1	322	163	177	10.2499
cguggacacgcacg	chr17:80785743-80785972(+)$1	229	154	168	12.5644
CUCGUGUGGGUGAU	chr21:46864192-46864478(+)$1	286	121	135	10.0755
CUGCAGGGAGGCAG	chr7:1482071-1482363(-)$1	292	156	170	12.5644
GCGGGCGUCACCGU	chr19:13106631-13106939(+)$1	308	208	222	9.9182
GGUGAGUGAGCGCC	chr3:129612250-129612502(-)$1	252	165	179	12.5644
UGGCGUCGCAGCCA	chr22:20040238-20040544(+)$1	306	263	277	10.4007
GGCUCCUGGAAGCC	chr22:50040901-50041155(-)$1	254	163	177	12.5644
GGGGUGUCAUCCCU	chr19:2194794-2195026(+)$1	232	117	131	12.5644
UGGUAAACUCACCA	chrX:13333005-13333248(+)$1	243	198	212	12.5644
agauggauggaugu	chr16:89031350-89031604(-)$1	254	44	58	9.2948
GUCCUCCUCUGGGC	chr21:46929101-46929342(-)$1	241	137	151	12.5644
UCCACCAAACUGGA	chr6:158051971-158052360(+)$1	389	334	348	12.5644
AUGUGAGAUAGGGU	chr1:27923247-27923493(-)$1	246	67	81	11.1968
UGCUGGGAAGAGCA	chr16:15234740-15235080(-)$1	340	243	257	10.4007
AGUUCGAGGCGACU	chr19:2130752-2130978(-)$1	226	32	46	12.5644
CUGGUGGGGUCCAG	chr11:65389535-65389814(+)$1	279	2	16	12.5644
AGUCAAGCCGGGCU	chr1:2170774-2171025(+)$1	251	59	73	9.6035
UCUCGGCCGGGGGA	chr21:46837560-46837825(+)$1	265	47	61	12.5644
GUGGAGCCAGCCAA	chr22:20051683-20051941(+)$1	258	178	192	10.0285
GUGCUAACCUGCGC	chr9:139559649-139559876(+)$1	227	144	158	12.5644
gcacacacacGCUG	chr3:194830026-194830407(-)$1	381	332	346	10.1233
GCUCCCAUGUGGGC	chr17:27072986-27073257(+)$1	271	188	202	12.5644
acacacacacgugu	chr13:113539264-113539514(+)$1	250	130	144	12.5644
GCUGGAACUGCAGU	chr2:131898265-131898584(+)$1	319	147	161	12.5644
ugagacacaacaca	chr22:49851975-49852269(-)$1	294	177	191	10.0066
ccguggggagacgg	chr1:179010723-179011055(+)$1	332	47	61	12.5644
GGCCGAGGGUGGCC	chr14:73924529-73924802(-)$1	273	140	154	12.5644
ugcacacacaugca	chr13:114561240-114561491(-)$1	251	139	153	12.5644
GCUGAACAAACAGG	chr4:1239052-1239315(-)$1	263	196	210	10.2499
ucugcacuuauaga	chr19:1882357-1882577(-)$1	220	3	17	10.4007
CAGGGAAUAGCCUG	chr1:1278634-1278888(-)$1	254	138	152	12.5644
ggucgcguggggcc	chr19:48984100-48984372(+)$1	272	127	141	12.5644
AGGCGCCUGAGCUU	chr9:136136920-136137133(-)$1	213	187	201	9.7373
CAGGCCCUCUUCUg	chr11:65346324-65346585(+)$1	261	83	97	10.4007
GGAGGAAAAACUCC	chr8:11665766-11666059(+)$1	293	228	242	12.5644
UGGCCCUCGUGCCC	chr19:49964744-49965010(+)$1	266	143	157	10.0285
CAUGGUGUCGCUGG	chr16:89360972-89361227(-)$1	255	146	160	9.9916
GGGCCGAGCUGCCU	chr6:109702839-109703169(-)$1	330	156	170	10.4007
GUGGUUCAUUCCAC	chr19:40737794-40738043(-)$1	249	167	181	12.5644

#DB
((((......))))	chr17:80785693-80785943(+)$1	1	204	218	12.5644
((((......))))	chr19:49606269-49606545(+)$1	1	14	28	12.5644
.(((......))).	chr8:144892214-144892485(-)$1	1	17	31	10.0950
((((......))))	chr19:1409150-1409404(+)$1	1	121	135	12.5644
((((......))))	chr1:1194316-1194585(-)$1	1	46	60	12.5644
((((......))))	chr16:2564427-2564712(+)$1	1	132	146	10.4007
((((......))))	chr17:80785797-80786062(+)$1	1	100	114	12.5644
.(((......))).	chr17:1465468-1465790(-)$1	1	163	177	10.2499
((((......))))	chr17:80785743-80785972(+)$1	1	154	168	12.5644
((((......))).	chr21:46864192-46864478(+)$1	1	121	135	10.0755
((((......))))	chr7:1482071-1482363(-)$1	1	156	170	12.5644
((((......))))	chr19:13106631-13106939(+)$1	1	208	222	9.9182
((((......))))	chr3:129612250-129612502(-)$1	1	165	179	12.5644
((((......))))	chr22:20040238-20040544(+)$1	1	263	277	10.4007
((((......))))	chr22:50040901-50041155(-)$1	1	163	177	12.5644
((((......))))	chr19:2194794-2195026(+)$1	1	117	131	12.5644
((((......))))	chrX:13333005-13333248(+)$1	1	198	212	12.5644
(.((......)).)	chr16:89031350-89031604(-)$1	1	44	58	9.2948
((((......))))	chr21:46929101-46929342(-)$1	1	137	151	12.5644
((((......))))	chr6:158051971-158052360(+)$1	1	334	348	12.5644
((.(......).))	chr1:27923247-27923493(-)$1	1	67	81	11.1968
((((......))))	chr16:15234740-15235080(-)$1	1	243	257	10.4007
((((......))))	chr19:2130752-2130978(-)$1	1	32	46	12.5644
((((......))))	chr11:65389535-65389814(+)$1	1	2	16	12.5644
((((......))))	chr1:2170774-2171025(+)$1	1	59	73	9.6035
((((......))))	chr21:46837560-46837825(+)$1	1	47	61	12.5644
.(((......))))	chr22:20051683-20051941(+)$1	1	178	192	10.0285
((((......))))	chr9:139559649-139559876(+)$1	1	144	158	12.5644
((((......).))	chr3:194830026-194830407(-)$1	1	332	346	10.1233
((((......))))	chr17:27072986-27073257(+)$1	1	188	202	12.5644
((((......))))	chr13:113539264-113539514(+)$1	1	130	144	12.5644
((((......))))	chr2:131898265-131898584(+)$1	1	147	161	12.5644
((.(......).))	chr22:49851975-49852269(-)$1	1	177	191	10.0066
((((......))))	chr1:179010723-179011055(+)$1	1	47	61	12.5644
((((......))))	chr14:73924529-73924802(-)$1	1	140	154	12.5644
((((......))))	chr13:114561240-114561491(-)$1	1	139	153	12.5644
.(((......))).	chr4:1239052-1239315(-)$1	1	196	210	10.2499
((((......))))	chr19:1882357-1882577(-)$1	1	3	17	10.4007
((((......))))	chr1:1278634-1278888(-)$1	1	138	152	12.5644
((((......))))	chr19:48984100-48984372(+)$1	1	127	141	12.5644
((((......))))	chr9:136136920-136137133(-)$1	1	187	201	9.7373
((((......))))	chr11:65346324-65346585(+)$1	1	83	97	10.4007
((((......))))	chr8:11665766-11666059(+)$1	1	228	242	12.5644
.(((......))))	chr19:49964744-49965010(+)$1	1	143	157	10.0285
(..(......)..)	chr16:89360972-89361227(-)$1	1	146	160	9.9916
((((......))))	chr6:109702839-109703169(-)$1	1	156	170	10.4007
((((......))))	chr19:40737794-40738043(-)$1	1	167	181	12.5644

#PSSM
d : 0.63	e : 0.12	[ : 0.08	c : 0.04	" : 0.02	f : 0.02	= : 0.02	g : 0.02	i : 0.02	
d : 0.59	c : 0.17	e : 0.12	= : 0.02	[ : 0.02	g : 0.02	i : 0.02	! : 0.02	
d : 0.57	c : 0.14	e : 0.12	[ : 0.04	= : 0.02	b : 0.02	g : 0.02	i : 0.02	! : 0.02	
d : 0.57	c : 0.12	e : 0.12	a : 0.08	= : 0.02	b : 0.02	g : 0.02	i : 0.02	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.57	c : 0.12	e : 0.12	a : 0.08	= : 0.02	b : 0.02	g : 0.02	i : 0.02	
d : 0.57	c : 0.12	e : 0.12	] : 0.06	= : 0.02	b : 0.02	g : 0.02	i : 0.02	2 : 0.02	
d : 0.59	c : 0.17	e : 0.12	= : 0.02	] : 0.02	g : 0.02	i : 0.02	2 : 0.02	
d : 0.63	e : 0.12	] : 0.06	b : 0.04	c : 0.04	3 : 0.02	= : 0.02	g : 0.02	i : 0.02	

#score	542.2439434827066
#seq	47
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_transcript_m2_run2.txt

#BEAR
fffffuuuuuuuuuuuuffffff	chr21:35281287-35281586(-)$1	299	183	206	21.5421
[ddddtttttttttttdddd]cc	chr6:133138077-133138297(+)$1	220	159	182	23.9139
gggggtttttttttttggggggg	chr6:26217074-26217341(+)$1	267	92	115	22.7540
eeeeevvvvvvvvvvvvveeeee	chr16:56395863-56396127(-)$1	264	146	169	21.5554
ddddwwwwwwwwwwwwwwdddd5	chr5:64314153-64314472(+)$1	319	200	223	19.1418
eeeeettttttttttteeeee33	chrX:122734853-122735119(-)$1	266	7	30	23.5500
eeeeettttttttttteeeee::	chr2:190636231-190636500(-)$1	269	83	106	21.7152
[ddddtttttttttttdddd===	chr3:160968793-160969048(+)$1	255	39	62	23.8301
eeeevvvvvvvvvvvvveeeee:	chr2:26413942-26414226(-)$1	284	34	57	20.7952
fffffuuuuuuuuuuuuffffff	chr1:149858715-149858950(+)$1	235	101	124	21.5421
ffffftttttttttttffffffd	chr4:119200136-119200355(+)$1	219	136	159	21.9499
[ddddtttttttttttddddbb]	chr17:40128482-40128736(-)$1	254	123	146	23.3093
:ddddtttttttttttdddd:::	chr1:25549413-25549678(-)$1	265	27	50	20.1308
dbbbbyyyyyyyyyyyyyyyybb	chr19:58905816-58906039(+)$1	223	78	101	19.3386
eeeeevvvvvvvvvvvvveeeee	chr1:40029442-40029693(-)$1	251	55	78	21.5554
ee[bbtttttttttttbbeeeee	chr17:45760086-45760358(+)$1	272	238	261	22.2512
iiiiitttttttttttiiiiiii	chrX:107327395-107327678(-)$1	283	237	260	22.7137
hhhhhttttttttttthhhhhhh	chr16:11445336-11445595(+)$1	259	179	202	20.4601
""ccctttttttttttccc333b	chr11:18428896-18429102(+)$1	206	163	186	22.7208
dddduuuuuuuuuuuudddd22c	chr1:24121843-24122110(+)$1	267	157	180	22.4916
=====ttttttttttt=======	chr6:13305100-13305355(-)$1	255	139	162	22.9218
hhhhhwwwwwwwwwwwwwwhhhh	chr3:52741847-52742136(+)$1	289	49	72	17.8509
fffffuuuuuuuuuuuuffffff	chr8:130853668-130853904(-)$1	236	152	175	21.5421
eeeeeyyyyyyyyyyyyyyyyee	chr1:40538371-40538675(-)$1	304	15	38	21.2165
dddduuuuuuuuuuuudddd]cc	chrX:30237805-30238132(+)$1	327	249	272	22.7355
#bbvvvvvvvvvvvvvbb4444f	chrX:153628941-153629145(+)$1	204	90	113	19.3447
eeeevvvvvvvvvvvvveeeeeD	chr1:112255046-112255312(+)$1	266	58	81	20.5312
eeeeeyyyyyyyyyyyyyyyyee	chr12:6840306-6840562(+)$1	256	140	163	21.2165
eeeeettttttttttteeeee]f	chr4:142155064-142155358(+)$1	294	135	158	23.4401
eeeeettttttttttteeeeeee	chr17:79857965-79858211(+)$1	246	114	137	23.3410
cccauuuuuuuuuuuua]ccc]h	chr6:133091101-133091372(-)$1	271	206	229	21.7649
gggggyyyyyyyyyyyyyyyygg	chr11:125453629-125453909(+)$1	280	6	29	20.9216
gddddtttttttttttdddd]gg	chr18:34376401-34376706(-)$1	305	116	139	23.8510
cddddtttttttttttdddd:::	chrX:152481791-152482042(-)$1	251	126	149	21.1645
dddduuuuuuuuuuuudddd]cc	chr19:36139141-36139405(+)$1	264	140	163	22.7355
eeeeettttttttttteeeee>>	chr3:113528440-113528684(+)$1	244	132	155	23.1116
eeeeettttttttttteeeee]g	chr17:34050634-34050938(+)$1	304	95	118	23.5181
fffwwwwwwwwwwwwwwffffff	chr11:77327160-77327404(-)$1	244	67	90	18.7470
[ddddtttttttttttdddd333	chr1:23405968-23406236(+)$1	268	216	239	24.0319
ddddvvvvvvvvvvvvvddddff	chrX:48436117-48436388(+)$1	271	68	91	21.5445
ffffftttttttttttffffff2	chr1:109968837-109969138(-)$1	301	66	89	21.8803
e[ccctttttttttttccc]eee	chr17:79477199-79477432(-)$1	233	68	91	22.9129
dddduuuuuuuuuuuudddd::c	chr12:98995237-98995448(+)$1	211	7	30	20.9950
dddduuuuuuuuuuuudddd:GG	chr15:89790770-89791005(+)$1	235	190	213	20.8879
hhhhhttttttttttthhhhhhh	chr17:19349781-19350074(-)$1	293	114	137	20.4601
ddcccwwwwwwwwwwwwwwccc5	chrX:48432846-48433062(+)$1	216	12	35	18.8867
eddddyyyyyyyyyyyyyyyydd	chr10:104240357-104240615(-)$1	258	35	58	21.0560
gggggtttttttttttggggggg	chr3:10143280-10143539(+)$1	259	134	157	22.7540
cc[bbtttttttttttbb]cccg	chr6:31802815-31803051(+)$1	236	146	169	21.9029
[ddddtttttttttttdddd]ee	chr17:1801172-1801433(+)$1	261	53	76	23.8276
fffffuuuuuuuuuuuuffffff	chr9:127998651-127998925(-)$1	274	103	126	21.5421
!ddddtttttttttttdddd22c	chr21:35275688-35275940(-)$1	252	30	53	23.6368
eeeeeyyyyyyyyyyyyyyyyee	chr12:7079637-7079891(-)$1	254	140	163	21.2165
%ddddtttttttttttddddfff	chr7:141443263-141443529(+)$1	266	182	205	22.8148
#ddddtttttttttttdddd444	chr14:75476003-75476301(+)$1	298	257	280	23.6007
cccccyyyyyyyyyyyyyyyycc	chr4:108535165-108535461(-)$1	296	240	263	20.9352
ffffftttttttttttffffffd	chr1:28864400-28864659(+)$1	259	121	144	21.9499
[ddddtttttttttttdddd22g	chr3:45052753-45053025(+)$1	272	45	68	23.6695

#otherMatches

#Seq PSSM
UCACUACCAAUCUGAUCAGUGAG	chr21:35281287-35281586(-)$1	299	183	206	21.5421
UGGGUAAUCAUAUAAAACCUUGU	chr6:133138077-133138297(+)$1	220	159	182	23.9139
GUGGAUUGUUAGUUCUUCUGCUG	chr6:26217074-26217341(+)$1	267	92	115	22.7540
GGUCCUUGAACAAGAUGUGGGCC	chr16:56395863-56396127(-)$1	264	146	169	21.5554
UAGCUGACCUUUUAUAUUGCUAA	chr5:64314153-64314472(+)$1	319	200	223	19.1418
GAGGGCCAUUUGCAUCUCCUUAA	chrX:122734853-122735119(-)$1	266	7	30	23.5500
GUUUCUGUGAUAAUGUGAAAUGA	chr2:190636231-190636500(-)$1	269	83	106	21.7152
CAGUGCUCACUCAAACCACUAAA	chr3:160968793-160969048(+)$1	255	39	62	23.8301
AUGGAAAACAGUUCACCCCAUGC	chr2:26413942-26414226(-)$1	284	34	57	20.7952
UGGGCAAAGUCACCAUCGCCCAG	chr1:149858715-149858950(+)$1	235	101	124	21.5421
CCGUCAGUUUGAGCCAGAUGGUG	chr4:119200136-119200355(+)$1	219	136	159	21.9499
UCUCUGUGAGUGGGGUGGAGCAA	chr17:40128482-40128736(-)$1	254	123	146	23.3093
CAUGCCUUCUCACUCAGCAUUUA	chr1:25549413-25549678(-)$1	265	27	50	20.1308
AGGCUGCCUUCCGGAACAUUAAG	chr19:58905816-58906039(+)$1	223	78	101	19.3386
ACAUCUGCCGCCAACACUGAUGU	chr1:40029442-40029693(-)$1	251	55	78	21.5554
UGUGAGUGAGGCGGUAUCCACAU	chr17:45760086-45760358(+)$1	272	238	261	22.2512
AAGAAUCUUCCAAUUUUUCUUUC	chrX:107327395-107327678(-)$1	283	237	260	22.7137
UUUGAGAUUGUAAAUAUCAAAGG	chr16:11445336-11445595(+)$1	259	179	202	20.4601
AAUAGUUCUGCCACCUCUGACGC	chr11:18428896-18429102(+)$1	206	163	186	22.7208
CGAUAAAAUUAAAGAAAUUGCUU	chr1:24121843-24122110(+)$1	267	157	180	22.4916
GUUUUUUUCCCCCAAUAAAAUUA	chr6:13305100-13305355(-)$1	255	139	162	22.9218
AGAGCUAAAACCACCUAAUGCUC	chr3:52741847-52742136(+)$1	289	49	72	17.8509
UUGAUGAUAAAAUAAAAAUCAGC	chr8:130853668-130853904(-)$1	236	152	175	21.5421
uuuccuacacuauuugagcaugg	chr1:40538371-40538675(-)$1	304	15	38	21.2165
CCCAUAGUGAAAUAUUUGGGAUC	chrX:30237805-30238132(+)$1	327	249	272	22.7355
UUGCUCCUUAGAUCCACAUCUCA	chrX:153628941-153629145(+)$1	204	90	113	19.3447
UUCAAAAAUAAAAAAUCUGAAGA	chr1:112255046-112255312(+)$1	266	58	81	20.5312
GCUCUCUCCCUUGUUUCCUUAAG	chr12:6840306-6840562(+)$1	256	140	163	21.2165
UGAAUUGUGUGUGGUUGUUCAAA	chr4:142155064-142155358(+)$1	294	135	158	23.4401
UGUUGACACUUUUAUCCAAUAAG	chr17:79857965-79858211(+)$1	246	114	137	23.3410
AAGCAAAACAAAACAAGACUUAG	chr6:133091101-133091372(-)$1	271	206	229	21.7649
CCCUGUUCACCUCCCGCCUGCCA	chr11:125453629-125453909(+)$1	280	6	29	20.9216
GCAGGUUGUGCUGUCCCCUGCCU	chr18:34376401-34376706(-)$1	305	116	139	23.8510
GGAGAUUUAUCUUUGUUCUCUUU	chrX:152481791-152482042(-)$1	251	126	149	21.1645
AGGUUGAAUCCGGGGUGCCUUUA	chr19:36139141-36139405(+)$1	264	140	163	22.7355
AGGUGUACCCUUUCCUCAUCUCU	chr3:113528440-113528684(+)$1	244	132	155	23.1116
CAGUACCCUUCAACCAUGCUGUG	chr17:34050634-34050938(+)$1	304	95	118	23.5181
UUGUAUCCUUUAAUUUCCAGCCU	chr11:77327160-77327404(-)$1	244	67	90	18.7470
UUUCCAUAUCCUUACAGGAAUAU	chr1:23405968-23406236(+)$1	268	216	239	24.0319
CAGGGACAUUUUAAAAACCUGUA	chrX:48436117-48436388(+)$1	271	68	91	21.5445
GCAGUUGGUCCUUAGUACUGCGG	chr1:109968837-109969138(-)$1	301	66	89	21.8803
UCUGUGCAGGGUAUUAACGUGUC	chr17:79477199-79477432(-)$1	233	68	91	22.9129
CUCGCCCUCCUCCACCCGAGAUG	chr12:98995237-98995448(+)$1	211	7	30	20.9950
AUGUGAGUAUUAGGAAGCAUGUU	chr15:89790770-89791005(+)$1	235	190	213	20.8879
UGGUCAAGGACAUGAAGAUCAAG	chr17:19349781-19350074(-)$1	293	114	137	20.4601
CUACGUACUCUUUAUCAAUCGUC	chrX:48432846-48433062(+)$1	216	12	35	18.8867
CACUUUAAAACUCGCUUUCUUGA	chr10:104240357-104240615(-)$1	258	35	58	21.0560
AUUGUCUAACACCAUCACAGUCC	chr3:10143280-10143539(+)$1	259	134	157	22.7540
CUGACUCAAAACAACUGUGAGUG	chr6:31802815-31803051(+)$1	236	146	169	21.9029
CGUACUUUUUCUACCUGUACACA	chr17:1801172-1801433(+)$1	261	53	76	23.8276
UUUUGUUAGGAAAAAAUUGAAAG	chr9:127998651-127998925(-)$1	274	103	126	21.5421
CGCAUUGGCGAGAAAUAUGUUGA	chr21:35275688-35275940(-)$1	252	30	53	23.6368
GGCACCCCCUUCUGACCUCCAGU	chr12:7079637-7079891(-)$1	254	140	163	21.2165
UUCUCUAGCAACUAAUGAGAUGU	chr7:141443263-141443529(+)$1	266	182	205	22.8148
AGGCUCUACCAAUAAAAGCCACU	chr14:75476003-75476301(+)$1	298	257	280	23.6007
GAUGGUUUUAAUGUAUCUUUUCC	chr4:108535165-108535461(-)$1	296	240	263	20.9352
AAGCCUCUGAGGGCCUGGCUUCU	chr1:28864400-28864659(+)$1	259	121	144	21.9499
CCCAAGAGACAGAAAGUUGGAUU	chr3:45052753-45053025(+)$1	272	45	68	23.6695

#DB
(((((............))))))	chr21:35281287-35281586(-)$1	1	183	206	21.5421
.((((...........)))).))	chr6:133138077-133138297(+)$1	1	159	182	23.9139
(((((...........)))))))	chr6:26217074-26217341(+)$1	1	92	115	22.7540
(((((.............)))))	chr16:56395863-56396127(-)$1	1	146	169	21.5554
((((..............)))).	chr5:64314153-64314472(+)$1	1	200	223	19.1418
(((((...........)))))..	chrX:122734853-122735119(-)$1	1	7	30	23.5500
(((((...........)))))..	chr2:190636231-190636500(-)$1	1	83	106	21.7152
.((((...........)))))))	chr3:160968793-160969048(+)$1	1	39	62	23.8301
((((.............))))).	chr2:26413942-26414226(-)$1	1	34	57	20.7952
(((((............))))))	chr1:149858715-149858950(+)$1	1	101	124	21.5421
(((((...........))))))(	chr4:119200136-119200355(+)$1	1	136	159	21.9499
.((((...........)))))).	chr17:40128482-40128736(-)$1	1	123	146	23.3093
.((((...........))))...	chr1:25549413-25549678(-)$1	1	27	50	20.1308
(((((................))	chr19:58905816-58906039(+)$1	1	78	101	19.3386
(((((.............)))))	chr1:40029442-40029693(-)$1	1	55	78	21.5554
((.((...........)))))))	chr17:45760086-45760358(+)$1	1	238	261	22.2512
(((((...........)))))))	chrX:107327395-107327678(-)$1	1	237	260	22.7137
(((((...........)))))))	chr16:11445336-11445595(+)$1	1	179	202	20.4601
..(((...........)))...)	chr11:18428896-18429102(+)$1	1	163	186	22.7208
((((............))))..)	chr1:24121843-24122110(+)$1	1	157	180	22.4916
(((((...........)))))))	chr6:13305100-13305355(-)$1	1	139	162	22.9218
(((((..............))))	chr3:52741847-52742136(+)$1	1	49	72	17.8509
(((((............))))))	chr8:130853668-130853904(-)$1	1	152	175	21.5421
(((((................))	chr1:40538371-40538675(-)$1	1	15	38	21.2165
((((............)))).))	chrX:30237805-30238132(+)$1	1	249	272	22.7355
.((.............))....)	chrX:153628941-153629145(+)$1	1	90	113	19.3447
((((.............))))))	chr1:112255046-112255312(+)$1	1	58	81	20.5312
(((((................))	chr12:6840306-6840562(+)$1	1	140	163	21.2165
(((((...........))))).)	chr4:142155064-142155358(+)$1	1	135	158	23.4401
(((((...........)))))))	chr17:79857965-79858211(+)$1	1	114	137	23.3410
((((............).))).)	chr6:133091101-133091372(-)$1	1	206	229	21.7649
(((((................))	chr11:125453629-125453909(+)$1	1	6	29	20.9216
(((((...........)))).))	chr18:34376401-34376706(-)$1	1	116	139	23.8510
)((((...........))))...	chrX:152481791-152482042(-)$1	1	126	149	21.1645
((((............)))).))	chr19:36139141-36139405(+)$1	1	140	163	22.7355
(((((...........)))))..	chr3:113528440-113528684(+)$1	1	132	155	23.1116
(((((...........))))).)	chr17:34050634-34050938(+)$1	1	95	118	23.5181
(((..............))))))	chr11:77327160-77327404(-)$1	1	67	90	18.7470
.((((...........))))...	chr1:23405968-23406236(+)$1	1	216	239	24.0319
((((.............))))))	chrX:48436117-48436388(+)$1	1	68	91	21.5445
(((((...........)))))).	chr1:109968837-109969138(-)$1	1	66	89	21.8803
(.(((...........))).)))	chr17:79477199-79477432(-)$1	1	68	91	22.9129
((((............))))..(	chr12:98995237-98995448(+)$1	1	7	30	20.9950
((((............)))).))	chr15:89790770-89791005(+)$1	1	190	213	20.8879
(((((...........)))))))	chr17:19349781-19350074(-)$1	1	114	137	20.4601
(((((..............))).	chrX:48432846-48433062(+)$1	1	12	35	18.8867
(((((................))	chr10:104240357-104240615(-)$1	1	35	58	21.0560
(((((...........)))))))	chr3:10143280-10143539(+)$1	1	134	157	22.7540
((.((...........)).))))	chr6:31802815-31803051(+)$1	1	146	169	21.9029
.((((...........)))).))	chr17:1801172-1801433(+)$1	1	53	76	23.8276
(((((............))))))	chr9:127998651-127998925(-)$1	1	103	126	21.5421
.((((...........))))..)	chr21:35275688-35275940(-)$1	1	30	53	23.6368
(((((................))	chr12:7079637-7079891(-)$1	1	140	163	21.2165
.((((...........)))))))	chr7:141443263-141443529(+)$1	1	182	205	22.8148
.((((...........))))...	chr14:75476003-75476301(+)$1	1	257	280	23.6007
(((((................))	chr4:108535165-108535461(-)$1	1	240	263	20.9352
(((((...........))))))(	chr1:28864400-28864659(+)$1	1	121	144	21.9499
.((((...........))))..)	chr3:45052753-45053025(+)$1	1	45	68	23.6695

#PSSM
e : 0.27	d : 0.15	f : 0.13	[ : 0.10	g : 0.06	c : 0.06	h : 0.05	# : 0.03	: : 0.01	i : 0.01	" : 0.01	= : 0.01	! : 0.01	% : 0.01	
d : 0.36	e : 0.24	f : 0.13	g : 0.05	h : 0.05	c : 0.05	b : 0.03	i : 0.01	" : 0.01	= : 0.01	[ : 0.01	
d : 0.34	e : 0.22	f : 0.13	c : 0.08	g : 0.05	h : 0.05	b : 0.03	[ : 0.03	i : 0.01	= : 0.01	
d : 0.34	e : 0.22	f : 0.12	c : 0.06	g : 0.05	b : 0.05	h : 0.05	i : 0.01	= : 0.01	v : 0.01	a : 0.01	w : 0.01	
d : 0.22	e : 0.18	f : 0.12	u : 0.10	v : 0.06	c : 0.06	g : 0.05	b : 0.05	h : 0.05	w : 0.03	i : 0.01	= : 0.01	
t : 0.53	u : 0.17	y : 0.12	v : 0.10	w : 0.06	
t : 0.53	u : 0.17	y : 0.12	v : 0.10	w : 0.06	
t : 0.53	u : 0.17	y : 0.12	v : 0.10	w : 0.06	
t : 0.53	u : 0.17	y : 0.12	v : 0.10	w : 0.06	
t : 0.53	u : 0.17	y : 0.12	v : 0.10	w : 0.06	
t : 0.53	u : 0.17	y : 0.12	v : 0.10	w : 0.06	
t : 0.53	u : 0.17	y : 0.12	v : 0.10	w : 0.06	
t : 0.53	u : 0.17	y : 0.12	v : 0.10	w : 0.06	
t : 0.53	u : 0.17	y : 0.12	v : 0.10	w : 0.06	
t : 0.53	u : 0.17	y : 0.12	v : 0.10	w : 0.06	
t : 0.53	u : 0.17	y : 0.12	v : 0.10	w : 0.06	
d : 0.29	y : 0.12	e : 0.10	v : 0.08	u : 0.06	w : 0.06	f : 0.05	b : 0.05	g : 0.03	h : 0.03	c : 0.03	i : 0.01	= : 0.01	a : 0.01	
d : 0.31	f : 0.13	e : 0.13	y : 0.12	w : 0.05	b : 0.05	g : 0.03	v : 0.03	h : 0.03	c : 0.03	i : 0.01	= : 0.01	] : 0.01	
d : 0.32	e : 0.18	f : 0.13	y : 0.12	c : 0.05	g : 0.03	h : 0.03	w : 0.03	i : 0.01	= : 0.01	4 : 0.01	] : 0.01	
d : 0.32	e : 0.18	f : 0.13	y : 0.12	h : 0.05	c : 0.05	g : 0.03	i : 0.01	3 : 0.01	= : 0.01	4 : 0.01	] : 0.01	
e : 0.20	f : 0.15	y : 0.12	] : 0.08	: : 0.06	h : 0.05	2 : 0.05	c : 0.05	g : 0.03	d : 0.03	= : 0.03	3 : 0.03	4 : 0.03	b : 0.01	i : 0.01	
e : 0.18	f : 0.17	c : 0.10	g : 0.06	: : 0.06	3 : 0.05	h : 0.05	2 : 0.05	] : 0.05	d : 0.03	= : 0.03	b : 0.03	4 : 0.03	i : 0.01	> : 0.01	G : 0.01	
f : 0.15	e : 0.15	c : 0.12	g : 0.12	: : 0.06	h : 0.06	d : 0.05	5 : 0.03	3 : 0.03	= : 0.03	b : 0.03	] : 0.01	i : 0.01	D : 0.01	> : 0.01	2 : 0.01	G : 0.01	4 : 0.01	

#score	1267.7242369448484
#seq	58
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_UTR_m1_run2.txt

#BEAR
$$$$$dddd####a[bbmmmmbb]a333ddddeee	chr4:1229566-1229800(-)$1	234	156	191	10.9664
[eeeee[ccc####bboooooobb4444ccc]eee	chr9:134349890-134350156(+)$1	266	111	146	16.9841
dddd$$$$$a####ddddllldddd22a333dddd	chr16:89349833-89350150(-)$1	317	80	115	11.5316
[eeeee####ccc!!cccmmmmcccccceeeee]a	chr16:89347152-89347422(-)$1	270	57	92	11.0338
b!!ccc[bb####bb[cccooooooccc]bb333b	chr4:1229196-1229413(-)$1	217	43	78	9.6685
d!!bb[bbdddd!!bboooooobb22dddd]bb]b	chr1:144932076-144932361(-)$1	285	126	161	11.4896
ffeeeee!!ccc!!bboooooobb22ccc]eeeee	chrX:153592597-153592830(-)$1	233	153	188	14.8802
ffffff"""a!!ddddoooooodddd22a333fff	chr7:1888838-1889078(-)$1	240	6	41	13.4868
ddffffff[bb"""bboooooobb22bb]ffffff	chr7:1887475-1887711(-)$1	236	33	68	13.6059
ee::dddd####ddddoooooodddd4444dddd:	chr16:89347358-89347609(-)$1	251	142	177	10.7200
:iiiiiiiii$$$$$bbmmmmbb4444iiiiiiii	chr19:11172458-11172716(+)$1	258	141	176	10.6000
eeee[bb!!ccc[cccooooooccc]cccbb]eee	chr19:39138284-39138537(+)$1	253	142	177	13.3133
eeeccc"""ccc[ddddmmmmdddd333ccc4444	chr5:71489866-71490112(+)$1	246	132	167	11.9069
fff[ffffffbba[bboooooobb]a]bb22ffff	chr16:89347086-89347350(-)$1	264	211	246	12.3406
cc[eeeee!!a[assssssssssa]a22eeeee]c	chr16:89350264-89350500(-)$1	236	177	212	10.0764
dd$$$$$cccbb[ddddoooooodddd]bb22ccc	chr16:89346585-89346860(-)$1	275	191	226	10.1594
ee"""eeeee!!a[cccnnnnnccc]a22eeeee]	chr14:105713567-105713827(-)$1	260	161	196	12.4234
!a[ggggggg!!ddddnnnnndddd4444gggggg	chr7:1131054-1131302(-)$1	248	99	134	11.6384
!!dddd[ccc!!ddddrrrrrrrrrdddd]cccdd	chr16:87736083-87736342(-)$1	259	75	110	9.0270
[eeeee[eeeee!!cccmmmmccceeeeeeeeee]	chr7:1132490-1132768(-)$1	278	218	253	10.4830
!!a[ccc[ccc"""ddddllldddd333ccc]ccc	chr7:1006198-1006484(-)$1	286	58	93	13.4316
gggggeeeee"""cccooooooccc22eeeee888	chr19:2270320-2270598(+)$1	278	201	236	13.9356
[eeeee!!ccc[assssssssssaccc]eeeee]a	chr9:134351607-134351899(+)$1	292	187	222	9.8232
hhhhffffff####cccmmmmccc4444fffffff	chr8:94752685-94752943(-)$1	258	69	104	11.5603
ccc[ccc[ccc!!cccooooooccc22cccccccc	chr14:105714222-105714487(-)$1	265	80	115	14.9721
dd[ccccccbb"""bbmmmmbb]bb]ccc333ccc	chr7:1133231-1133471(-)$1	240	190	225	10.7416
!!bb[eeeee"""ddddnnnnndddd333eeeee]	chr7:1131212-1131475(-)$1	263	169	204	12.3553
ii[dddd[ccc"""bbnnnnnbb333ccc22dddd	chr7:1887656-1887908(-)$1	252	109	144	12.3788
eeee[eeeee[a"""ccclllccc333a]eeeee]	chr16:89348867-89349114(-)$1	247	41	76	13.4972
[eeeee####a!!ccclllccc22a4444eeeee]	chr22:21801092-21801341(+)$1	249	50	85	12.1902
dddccc[ccc[bb[bboooooobb]bb4444cccc	chr16:89347792-89348081(-)$1	289	244	279	13.3253
=======!!bb!!cccooooooccc]bb]======	chr1:245026257-245026508(-)$1	251	148	183	14.5176
[a####ccc!!bb[bboooooobb]bb22ccc333	chr16:89350307-89350602(-)$1	295	89	124	13.5117
[ggggggg####ddddoooooodddd]ggggggg]	chr4:1229669-1229957(-)$1	288	10	45	13.7174
cc[a[ccc[ccc[cccooooooccc]cccccc333	chr4:1228556-1228826(-)$1	270	1	36	14.5354
ccc:dddd[ccc"""bbnnnnnbb333ccc]dddd	chr5:71490506-71490752(+)$1	246	210	245	11.3156
eeeeeeeee$$$$$bboooooobb333eeeee>>>	chr16:89350802-89351075(-)$1	273	175	210	14.7409
ccc####eeeee[cccooooooccceeeee22ccc	chr20:25843563-25843811(-)$1	248	100	135	12.3029
fff[ffffffbba[bboooooobb]a]bb22ffff	chr16:89346985-89347212(-)$1	227	73	108	12.3406
gggg!!dddd"""cccbbmmmmbb]cccddddggg	chr4:1230108-1230372(-)$1	264	17	52	10.7177

#otherMatches

#Seq PSSM
cuuuagaggaagacagcgucagccgaggccucggg	chr4:1229566-1229800(-)$1	234	156	191	10.9664
UUUUGUUUCCACCCCAAGAAAAUGUUCAGGAUGCA	chr9:134349890-134350156(+)$1	266	111	146	16.9841
GCGCAGGGACGGCAGGGCCAAGCCCGAGGAGGCGC	chr16:89349833-89350150(-)$1	317	80	115	11.5316
UCGACGCUUUGCACUGCCCACCGGCUGCCGUUGUC	chr16:89347152-89347422(-)$1	270	57	92	11.0338
GGAUCUGAGAAAACGGCGAAGCUGAUCGGUGGAAC	chr4:1229196-1229413(-)$1	217	43	78	9.6685
CGAGGGUCGCGCUGGCUACCUCGCAUGCGCAGAGC	chr1:144932076-144932361(-)$1	285	126	161	11.4896
ACAGUGGAUGCCAAGCACGGUGGCAAGGCCCCACU	chrX:153592597-153592830(-)$1	233	153	188	14.8802
UUCAUAAAGCAAAGCUUCACCCGGCUAAGACGUGU	chr7:1888838-1889078(-)$1	240	6	41	13.4868
UGGGACUCCCAGCCGCUUCUCUGUCAUGAGAGUCC	chr7:1887475-1887711(-)$1	236	33	68	13.6059
CGAUGGAAGACAGGGCGCCCCUGCCCCCGGUUCCC	chr16:89347358-89347609(-)$1	251	142	177	10.7200
ACUGUAUAAACAAAAGAAUCUUCCAUAUUUAUACA	chr19:11172458-11172716(+)$1	258	141	176	10.6000
CCCCAGCAGCGCGGGCAAUGGCGCUGGCGGCGGGG	chr19:39138284-39138537(+)$1	253	142	177	13.3133
GCCUUGUUUGCAGUGAAUGGUUUCAAUAUGCUCAU	chr5:71489866-71490112(+)$1	246	132	167	11.9069
UCCCUUCAGCGCCGUCAUCACCGAGGAGCCCGUUG	chr16:89347086-89347350(-)$1	264	211	246	12.3406
UCAUCUUGGAGACGGUGAAGGAGGACAGCAAGGAG	chr16:89350264-89350500(-)$1	236	177	212	10.0764
CUCUGGGGCCCCUGGAAAAUAGCUUCCUGGACGGC	chr16:89346585-89346860(-)$1	275	191	226	10.1594
GUGUUGGUGGAAUGCAGAGCAGCUGGAGAUCACCU	chr14:105713567-105713827(-)$1	260	161	196	12.4234
UGGGUUUGUUAACUGCAGAGAGUGGGAAGAACAGA	chr7:1131054-1131302(-)$1	248	99	134	11.6384
AGAGAGGCCCCUGUGGUUUUUUUCUCCGCCGGGCU	chr16:87736083-87736342(-)$1	259	75	110	9.0270
CCCAGGUGUGUGCAGCUCCCGAGUCACACCCUGGC	chr7:1132490-1132768(-)$1	278	218	253	10.4830
cucaugaaugguuuauuucuggaauuuuccacuua	chr7:1006198-1006484(-)$1	286	58	93	13.4316
GGGGUGGCGCACUCCGACAGCCCGGCAGCGCCCUG	chr19:2270320-2270598(+)$1	278	201	236	13.9356
GUGGUUGACAGACAGAGCCGAAAGCUGGAGCCGGG	chr9:134351607-134351899(+)$1	292	187	222	9.8232
UCUCGAAGGAUUUCAUAGGUAUAUUUUUUUCUUUG	chr8:94752685-94752943(-)$1	258	69	104	11.5603
gucgcgcgcugaaggucacacagccggcggguggg	chr14:105714222-105714487(-)$1	265	80	115	14.9721
GGCACCCGACUAACCCACACGGCAGCUCGCACGGU	chr7:1133231-1133471(-)$1	240	190	225	10.7416
AUGGUGAAUCCAUCUUUAGAAAGAAGCGUGAUUCU	chr7:1131212-1131475(-)$1	263	169	204	12.3553
UUGAGGGAGGGAGAGUGGCCUGCGGACCCAGCCCU	chr7:1887656-1887908(-)$1	252	109	144	12.3788
AGAGAAGACUCCAACGAUAAAAUCAGCGAGGUCUC	chr16:89348867-89349114(-)$1	247	41	76	13.4972
CGGGUGGCCCCUCUGGCCCCCACUGCCCACACCCA	chr22:21801092-21801341(+)$1	249	50	85	12.1902
ACCCCUACGUCGGUGCUAUCCUGCCCCAGCUACGA	chr16:89347792-89348081(-)$1	289	244	279	13.3253
ggaggggagcgccgccgcgccgggcucggccccUC	chr1:245026257-245026508(-)$1	251	148	183	14.5176
GCUUUUGACGAAUAUUGUAACAAAAAUCAGUUUCU	chr16:89350307-89350602(-)$1	295	89	124	13.5117
AGAGGCCUAUAACCUGCAGGAACGGGCGGGCCUUG	chr4:1229669-1229957(-)$1	288	10	45	13.7174
cagcaugauggcgagugaagaagcugguuucaagg	chr4:1228556-1228826(-)$1	270	1	36	14.5354
AGCAGCCACUGGCCACCCAAAAGGAUCUCACUGGC	chr5:71490506-71490752(+)$1	246	210	245	11.3156
CUAAAAGUGUUAAAGCACGAUCGCGACCACUUUAA	chr16:89350802-89351075(-)$1	273	175	210	14.7409
gacgguguugguuggggugagucucgccaaaaguc	chr20:25843563-25843811(-)$1	248	100	135	12.3029
UCCCUUCAGCGCCGUCAUCACCGAGGAGCCCGUUG	chr16:89346985-89347212(-)$1	227	73	108	12.3406
CGGUUUGUCCUGAGCCCCAUCAGGAGGUGGACACC	chr4:1230108-1230372(-)$1	264	17	52	10.7177

#DB
.....((((....(.((....)).)...)))))))	chr4:1229566-1229800(-)$1	1	156	191	10.9664
.(((((.(((....((......))....))).)))	chr9:134349890-134350156(+)$1	1	111	146	16.9841
((((.....(....((((...))))..)...))))	chr16:89349833-89350150(-)$1	1	80	115	11.5316
.(((((....(((..(((....))))))))))).)	chr16:89347152-89347422(-)$1	1	57	92	11.0338
(..(((.((....((.(((......))).))...)	chr4:1229196-1229413(-)$1	1	43	78	9.6685
(..((.((((((..((......))..)))).)).)	chr1:144932076-144932361(-)$1	1	126	161	11.4896
))(((((..(((..((......))..))).)))))	chrX:153592597-153592830(-)$1	1	153	188	14.8802
((((((...(..((((......))))..)...)))	chr7:1888838-1889078(-)$1	1	6	41	13.4868
((((((((.((...((......))..)).))))))	chr7:1887475-1887711(-)$1	1	33	68	13.6059
))..((((....((((......))))....)))).	chr16:89347358-89347609(-)$1	1	142	177	10.7200
.(((((((((.....((....))....))))))))	chr19:11172458-11172716(+)$1	1	141	176	10.6000
((((.((..(((.(((......))).))))).)))	chr19:39138284-39138537(+)$1	1	142	177	13.3133
((((((...(((.((((....))))...)))....	chr5:71489866-71490112(+)$1	1	132	167	11.9069
(((.(((((((((.((......)).).))..))))	chr16:89347086-89347350(-)$1	1	211	246	12.3406
((.(((((..(.(..........).)..))))).)	chr16:89350264-89350500(-)$1	1	177	212	10.0764
((.....(((((.((((......)))).))..)))	chr16:89346585-89346860(-)$1	1	191	226	10.1594
((...(((((..(.(((.....))).)..))))).	chr14:105713567-105713827(-)$1	1	161	196	12.4234
.(.(((((((..((((.....))))....))))))	chr7:1131054-1131302(-)$1	1	99	134	11.6384
..((((.(((..((((.........)))).)))))	chr16:87736083-87736342(-)$1	1	75	110	9.0270
.(((((.(((((..(((....))))))))))))).	chr7:1132490-1132768(-)$1	1	218	253	10.4830
..(.(((.(((...((((...))))...))).)))	chr7:1006198-1006484(-)$1	1	58	93	13.4316
((((((((((...(((......)))..)))))...	chr19:2270320-2270598(+)$1	1	201	236	13.9356
.(((((..(((.(..........)))).))))).)	chr9:134351607-134351899(+)$1	1	187	222	9.8232
))))((((((....(((....)))....))))))(	chr8:94752685-94752943(-)$1	1	69	104	11.5603
(((.(((.(((..(((......)))..))))))))	chr14:105714222-105714487(-)$1	1	80	115	14.9721
((.((((((((...((....)).)).)))...)))	chr7:1133231-1133471(-)$1	1	190	225	10.7416
..((.(((((...((((.....))))...))))).	chr7:1131212-1131475(-)$1	1	169	204	12.3553
((.((((.(((...((.....))...)))..))))	chr7:1887656-1887908(-)$1	1	109	144	12.3788
((((.(((((.(...(((...)))...).))))).	chr16:89348867-89349114(-)$1	1	41	76	13.4972
.(((((....(..(((...)))..)....))))).	chr22:21801092-21801341(+)$1	1	50	85	12.1902
((((((.(((.((.((......)).))....))))	chr16:89347792-89348081(-)$1	1	244	279	13.3253
(((((((..((..(((......))).)).))))))	chr1:245026257-245026508(-)$1	1	148	183	14.5176
.(....(((..((.((......)).))..)))...	chr16:89350307-89350602(-)$1	1	89	124	13.5117
.(((((((....((((......)))).))))))).	chr4:1229669-1229957(-)$1	1	10	45	13.7174
((.(.(((.(((.(((......))).))))))...	chr4:1228556-1228826(-)$1	1	1	36	14.5354
))).((((.(((...((.....))...))).))))	chr5:71490506-71490752(+)$1	1	210	245	11.3156
(((((((((.....((......))...)))))...	chr16:89350802-89351075(-)$1	1	175	210	14.7409
(((....(((((.(((......))))))))..)))	chr20:25843563-25843811(-)$1	1	100	135	12.3029
(((.(((((((((.((......)).).))..))))	chr16:89346985-89347212(-)$1	1	73	108	12.3406
((((..((((...(((((....)).))))))))))	chr4:1230108-1230372(-)$1	1	17	52	10.7177

#PSSM
[ : 0.17	d : 0.15	e : 0.15	c : 0.12	f : 0.10	! : 0.10	g : 0.05	$ : 0.02	b : 0.02	: : 0.02	h : 0.02	i : 0.02	= : 0.02	
e : 0.27	d : 0.12	! : 0.12	c : 0.12	f : 0.10	g : 0.07	i : 0.05	a : 0.05	$ : 0.02	h : 0.02	= : 0.02	
e : 0.24	[ : 0.12	f : 0.10	d : 0.07	g : 0.07	c : 0.07	$ : 0.05	! : 0.05	: : 0.02	i : 0.02	" : 0.02	a : 0.02	h : 0.02	b : 0.02	= : 0.02	# : 0.02	
e : 0.24	c : 0.10	[ : 0.10	g : 0.10	d : 0.07	$ : 0.05	b : 0.05	f : 0.05	: : 0.05	# : 0.05	i : 0.02	" : 0.02	h : 0.02	= : 0.02	a : 0.02	
e : 0.19	c : 0.15	f : 0.12	d : 0.10	[ : 0.10	$ : 0.07	g : 0.07	# : 0.05	b : 0.02	i : 0.02	" : 0.02	= : 0.02	! : 0.02	
e : 0.30	c : 0.17	d : 0.12	f : 0.12	$ : 0.05	g : 0.05	# : 0.05	[ : 0.02	i : 0.02	b : 0.02	= : 0.02	! : 0.02	
e : 0.17	d : 0.12	[ : 0.12	c : 0.12	f : 0.10	# : 0.07	$ : 0.05	b : 0.05	" : 0.05	g : 0.05	i : 0.02	! : 0.02	= : 0.02	
e : 0.19	c : 0.17	d : 0.10	! : 0.10	f : 0.10	[ : 0.07	# : 0.05	b : 0.05	" : 0.05	g : 0.05	$ : 0.02	i : 0.02	
c : 0.24	e : 0.17	# : 0.10	! : 0.10	d : 0.07	[ : 0.07	f : 0.07	" : 0.05	$ : 0.02	b : 0.02	i : 0.02	g : 0.02	
c : 0.32	# : 0.15	e : 0.15	b : 0.07	f : 0.07	a : 0.05	d : 0.05	! : 0.05	i : 0.02	g : 0.02	$ : 0.02	
c : 0.24	# : 0.17	b : 0.15	! : 0.12	" : 0.07	$ : 0.05	a : 0.05	e : 0.05	[ : 0.05	d : 0.02	
# : 0.17	! : 0.17	" : 0.17	c : 0.15	b : 0.12	$ : 0.05	[ : 0.05	e : 0.05	d : 0.02	a : 0.02	
" : 0.22	! : 0.15	# : 0.12	d : 0.12	[ : 0.12	a : 0.12	$ : 0.05	b : 0.05	c : 0.02	
d : 0.19	c : 0.19	" : 0.15	[ : 0.12	! : 0.10	# : 0.07	$ : 0.05	s : 0.05	a : 0.02	b : 0.02	
b : 0.30	c : 0.27	d : 0.24	s : 0.05	" : 0.05	[ : 0.02	! : 0.02	$ : 0.02	
b : 0.35	c : 0.32	d : 0.24	s : 0.05	[ : 0.02	
o : 0.45	c : 0.15	d : 0.12	b : 0.10	s : 0.05	n : 0.05	r : 0.02	m : 0.02	l : 0.02	
o : 0.47	m : 0.15	n : 0.12	c : 0.07	d : 0.05	s : 0.05	r : 0.02	l : 0.02	b : 0.02	
o : 0.47	m : 0.19	n : 0.12	l : 0.10	s : 0.05	c : 0.02	r : 0.02	
o : 0.50	m : 0.19	n : 0.12	l : 0.07	s : 0.05	r : 0.02	c : 0.02	
o : 0.50	m : 0.17	n : 0.12	l : 0.07	s : 0.05	r : 0.02	b : 0.02	c : 0.02	
o : 0.50	b : 0.10	d : 0.10	c : 0.10	n : 0.07	m : 0.05	s : 0.05	r : 0.02	
b : 0.35	c : 0.27	d : 0.19	o : 0.05	s : 0.05	r : 0.02	] : 0.02	2 : 0.02	
b : 0.30	c : 0.27	d : 0.22	a : 0.05	] : 0.02	o : 0.02	4 : 0.02	r : 0.02	3 : 0.02	2 : 0.02	
d : 0.22	c : 0.22	] : 0.15	3 : 0.10	4 : 0.07	2 : 0.07	a : 0.05	o : 0.02	r : 0.02	e : 0.02	b : 0.02	
3 : 0.17	2 : 0.15	d : 0.15	4 : 0.12	] : 0.12	c : 0.10	a : 0.07	e : 0.05	b : 0.05	
c : 0.22	3 : 0.17	4 : 0.15	2 : 0.12	b : 0.10	d : 0.07	] : 0.07	e : 0.05	a : 0.02	
c : 0.24	4 : 0.15	3 : 0.10	2 : 0.10	b : 0.10	e : 0.10	a : 0.05	d : 0.05	] : 0.05	i : 0.02	g : 0.02	
c : 0.24	e : 0.17	d : 0.10	] : 0.10	4 : 0.10	b : 0.07	3 : 0.05	2 : 0.05	a : 0.02	i : 0.02	f : 0.02	g : 0.02	
e : 0.27	c : 0.17	d : 0.07	3 : 0.07	b : 0.07	2 : 0.07	] : 0.05	f : 0.05	4 : 0.05	g : 0.05	i : 0.02	= : 0.02	
e : 0.27	c : 0.17	2 : 0.12	d : 0.07	3 : 0.07	b : 0.05	] : 0.05	f : 0.05	g : 0.05	i : 0.02	4 : 0.02	= : 0.02	
e : 0.27	d : 0.15	c : 0.12	f : 0.10	] : 0.07	3 : 0.07	2 : 0.05	g : 0.05	b : 0.02	i : 0.02	4 : 0.02	= : 0.02	
e : 0.30	c : 0.17	f : 0.12	d : 0.10	3 : 0.07	g : 0.07	b : 0.02	i : 0.02	4 : 0.02	8 : 0.02	= : 0.02	> : 0.02	
e : 0.22	c : 0.15	d : 0.12	f : 0.12	] : 0.10	3 : 0.07	g : 0.07	i : 0.02	4 : 0.02	8 : 0.02	= : 0.02	> : 0.02	
c : 0.17	] : 0.15	f : 0.12	e : 0.10	d : 0.10	a : 0.05	b : 0.05	g : 0.05	3 : 0.05	: : 0.02	i : 0.02	4 : 0.02	8 : 0.02	= : 0.02	> : 0.02	

#score	492.24822393165
#seq	40
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_CDS_m3_run2.txt

#BEAR
eee!!cccooooooccc22eee	chr14:31813114-31813358(-)$1	244	87	109	13.0603
ccc!!cccooooooccc22ccc	chr1:223940453-223940686(+)$1	233	195	217	13.2604
fff!!cccooooooccc4444f	chr22:38273658-38273888(+)$1	230	178	200	13.2583
:ccc[cccooooooccc]ccc:	chr11:118888085-118888308(-)$1	223	90	112	11.6630
g####cccooooooccc4444g	chr14:21828568-21828781(-)$1	213	98	120	13.4656
""ffffffooooooffffff33	chr4:57335776-57336000(+)$1	224	175	197	11.4767
cc[eeeeeooooooeeeeeccc	chr12:120637148-120637364(-)$1	216	60	82	11.3276
eeee[cccooooooccc]eeee	chr16:66967821-66968039(-)$1	218	5	27	13.0133
#gggggggooooooggggggg2	chr17:38546273-38546491(-)$1	218	56	78	12.4159
ggg"""bboooooobb4444gg	chr1:28939706-28939936(-)$1	230	201	223	12.7111
#ccc!!bboooooobbccc666	chr2:44175160-44175421(-)$1	261	129	151	11.4179
ggggddddooooooddddbb!!	chr3:53276099-53276312(-)$1	213	65	87	10.2658
!!ffffffooooooffffff22	chr22:19423344-19423556(+)$1	212	25	47	11.1161
b[ffffffooooooffffffbb	chr19:8028473-8028694(-)$1	221	39	61	10.3634
eeee[cccooooooccc]eeee	chr16:2813467-2813671(+)$1	204	168	190	13.0133
dddeeeeeooooooeeeee333	chr3:42632917-42633150(+)$1	233	121	143	11.4414
!gggggggooooooggggggg]	chr11:71154940-71155169(-)$1	229	135	157	12.6370
[dddd[bboooooobbddddgg	chr12:118573981-118574192(+)$1	211	109	131	11.4114
d"""ddddoooooodddddddd	chr3:184042672-184042886(+)$1	214	75	97	10.8613
Jgggggggooooooggggggg:	chr17:1780405-1780610(+)$1	205	25	47	10.3041
iiiiiiiiooooooiiiiiiii	chr7:127231167-127231388(+)$1	221	115	137	12.4129
:gggggggooooooggggggg:	chr3:122121568-122121818(+)$1	250	60	82	10.8277
========oooooo========	chr19:13050342-13050545(+)$1	203	23	45	13.0147
d[ddddbboooooobb]dddd3	chr2:242202131-242202389(-)$1	258	109	131	11.2214
[bb!!cccooooooccc22bbh	chr16:2811959-2812173(+)$1	214	148	170	12.1658
%ddddcccooooooccc]dddd	chr19:6457451-6457701(-)$1	250	153	175	11.8173
==========lll=========	chr7:141341509-141341809(+)$1	300	205	227	8.5379
eeee[cccooooooccc4444e	chr11:67166513-67166734(-)$1	221	149	171	13.3648
ee"""cccooooooccceeeee	chr10:6154154-6154417(+)$1	263	108	130	12.9095
ee[eeeeeooooooeeeee]ee	chr1:155180262-155180516(+)$1	254	139	161	11.2889
!ccc!!bboooooobb22ccc2	chr16:30078823-30079041(+)$1	218	127	149	12.3066
[ddddcccooooooccc]dddd	chr22:38258875-38259077(+)$1	202	121	143	12.4256
fffff[bboooooobb22ffff	chr8:48810970-48811181(-)$1	211	10	32	11.0505
dd[eeeeeooooooeeeee22d	chr1:45243223-45243428(+)$1	205	123	145	10.8715
ggggg[bboooooobbgggggg	chr9:135224620-135224828(-)$1	208	162	184	12.2905
eeee[cccooooooccceeeee	chr6:31750397-31750607(-)$1	210	95	117	12.7398
e[ddddbboooooobb22dddd	chr11:67864415-67864697(-)$1	282	49	71	11.1872
###eeeeeooooooeeeee444	chr10:121274973-121275175(-)$1	202	55	77	11.7146
eee!!cccooooooccc22eee	chr5:175782551-175782763(-)$1	212	49	71	13.0603
!gggggggooooooggggggg]	chr11:64875173-64875380(+)$1	207	125	147	12.6370
FFFFFcccoooooocccggggg	chr11:62459752-62460048(-)$1	296	167	189	10.6854
###eeeeeooooooeeeee777	chr6:35837316-35837549(-)$1	233	54	76	10.1264
ddd"""bboooooobb333ddd	chr2:181925433-181925640(+)$1	207	78	100	12.2354
$bb!!cccooooooccc]bb33	chr18:10539689-10539904(+)$1	215	149	171	12.6403
eeee[cccooooooccc]eeee	chr13:28009885-28010118(-)$1	233	153	175	13.0133
ffff[cccoooooocccfffff	chr15:69080008-69080246(-)$1	238	55	77	12.1511
[bbddddaooooooa]dddd]b	chr9:111741468-111741711(-)$1	243	35	57	10.6434
:ccc!!bboooooobb333ccc	chr7:139416173-139416454(-)$1	281	10	32	12.0125
:gggggggooooooggggggg:	chr2:153520603-153520850(-)$1	247	133	155	10.8277
hh!!a!!aooooooa22a22hh	chr8:117669430-117669654(-)$1	224	148	170	10.7966
c!!bb[bboooooobb]bb]cc	chr5:176859606-176859841(+)$1	235	183	205	10.9476
dd!!ddddoooooodddd8888	chr19:58904259-58904472(+)$1	213	66	88	9.8976
ddddbb[aooooooa]bb333d	chr10:22608825-22609085(+)$1	260	65	87	10.6842
ee"""cccooooooccc333ee	chr7:98984260-98984474(+)$1	214	78	100	13.6466
[ccc[cccoooooocccccc]b	chr19:5785351-5785573(-)$1	222	8	30	12.9237
===========lll========	chr17:30533852-30534148(+)$1	296	128	150	8.5379
::ccccccooooooccc]cccE	chr9:35059016-35059263(-)$1	247	220	242	10.1882

#otherMatches

#Seq PSSM
GUAACAGUACUUCAAUUUCUAC	chr14:31813114-31813358(-)$1	244	87	109	13.0603
AACUACCCGAGUAAGGGCUGUU	chr1:223940453-223940686(+)$1	233	195	217	13.2604
CUUUUCAGUUACUCCUGCCCCA	chr22:38273658-38273888(+)$1	230	178	200	13.2583
ACUUAGUCUUGUUUGACAAAGC	chr11:118888085-118888308(-)$1	223	90	112	11.6630
UCACAUCUGUUCGAGGAGACAA	chr14:21828568-21828781(-)$1	213	98	120	13.4656
GUUAGUUGCUUGUACAGUUAUU	chr4:57335776-57336000(+)$1	224	175	197	11.4767
GGCUUGUUUUUUGUAGCAACUA	chr12:120637148-120637364(-)$1	216	60	82	11.3276
GGGCGUUCCUGGCAGAGGGUUC	chr16:66967821-66968039(-)$1	218	5	27	13.0133
UGCCUGUAUUGAAUUGCAGGUC	chr17:38546273-38546491(-)$1	218	56	78	12.4159
AAGUAUGGAUUCAACUGCUUCU	chr1:28939706-28939936(-)$1	230	201	223	12.7111
UGGAAAGCUACCAUGUUCCUGA	chr2:44175160-44175421(-)$1	261	129	151	11.4179
CAUGCUGCAGCGCCGCAGAGAU	chr3:53276099-53276312(-)$1	213	65	87	10.2658
UCCCCUUUGAGAAGGAAGGGCC	chr22:19423344-19423556(+)$1	212	25	47	11.1161
CUCUGGCGUCAACGUGCCAGGA	chr19:8028473-8028694(-)$1	221	39	61	10.3634
GUGCAGGAGUAAAAUCUAGCAC	chr16:2813467-2813671(+)$1	204	168	190	13.0133
UGAUCCGCUGUAUUGUGGAGUA	chr3:42632917-42633150(+)$1	233	121	143	11.4414
GCAGCCCCUGCCCUGGGGUUGG	chr11:71154940-71155169(-)$1	229	135	157	12.6370
AUGUCACCUACGCCGGGGCGGC	chr12:118573981-118574192(+)$1	211	109	131	11.4114
UUAUUGGAGAGUUGUUCAAACU	chr3:184042672-184042886(+)$1	214	75	97	10.8613
UGUAGGAAGAUGAUUUCUUACU	chr17:1780405-1780610(+)$1	205	25	47	10.3041
CCUGUGCCACCCAAGGCACAGG	chr7:127231167-127231388(+)$1	221	115	137	12.4129
AAGAGAUGUUUCCUCAUCUCUA	chr3:122121568-122121818(+)$1	250	60	82	10.8277
GGGCGGCUAUGUGAAGCUGUUU	chr19:13050342-13050545(+)$1	203	23	45	13.0147
AACAAGCAAAAAUCUGCCUUGA	chr2:242202131-242202389(-)$1	258	109	131	11.2214
AGCCCCCAGCGACGUGGCCGCU	chr16:2811959-2812173(+)$1	214	148	170	12.1658
AUCUCGCUGGAGCAGGCUGAGA	chr19:6457451-6457701(-)$1	250	153	175	11.8173
GUGCUUUUUUAUUAGAAAAGCA	chr7:141341509-141341809(+)$1	300	205	227	8.5379
GCCCACAGAUGUGCCUGACCAG	chr11:67166513-67166734(-)$1	221	149	171	13.3648
GUCAGUGGAGAAGACCAGCAAG	chr10:6154154-6154417(+)$1	263	108	130	12.9095
CCCACCUUCGAAAAGAGGUAGG	chr1:155180262-155180516(+)$1	254	139	161	11.2889
UCAAAUCCAAGGGCGGUGUUGU	chr16:30078823-30079041(+)$1	218	127	149	12.3066
AGGUUUGAAUCCUAUUACAACU	chr22:38258875-38259077(+)$1	202	121	143	12.4256
UAUAUGCCUUCUUUGGAAAUAU	chr8:48810970-48811181(-)$1	211	10	32	11.0505
UCGUACCAAGACCCUGGUGAAG	chr1:45243223-45243428(+)$1	205	123	145	10.8715
AAGAGAUGAAUUGCCAUUCUUG	chr9:135224620-135224828(-)$1	208	162	184	12.2905
CCUCCGCCUUUCCUGGUGAGGC	chr6:31750397-31750607(-)$1	210	95	117	12.7398
GAUUUAGCUCACCUGCAAUAAA	chr11:67864415-67864697(-)$1	282	49	71	11.1872
CAAGGCCUCAUCACAGGUCAAC	chr10:121274973-121275175(-)$1	202	55	77	11.7146
CCCAUCGGGAUAUACCGCCGGG	chr5:175782551-175782763(-)$1	212	49	71	13.0603
UGCAGUUCCUCUUUGAGCUGCC	chr11:64875173-64875380(+)$1	207	125	147	12.6370
ACCUCCGCAUCCACGCGCACUU	chr11:62459752-62460048(-)$1	296	167	189	10.6854
AUCAGGAAUCUAGUUUCCUAAG	chr6:35837316-35837549(-)$1	233	54	76	10.1264
UGUUCCCUUUUGACAGACUGCA	chr2:181925433-181925640(+)$1	207	78	100	12.2354
AGCAGCCAUGGCUUUGGAGCGA	chr18:10539689-10539904(+)$1	215	149	171	12.6403
AGCUGUUCAAGGAGGAAAAGCU	chr13:28009885-28010118(-)$1	233	153	175	13.0133
UUGAAGAACUGGAAUUCUUAAG	chr15:69080008-69080246(-)$1	238	55	77	12.1511
UGGAGGACUUUACUGAUUCUGC	chr9:111741468-111741711(-)$1	243	35	57	10.6434
ACUCAAGCGUAAGAGCGAGGAG	chr7:139416173-139416454(-)$1	281	10	32	12.0125
CUUGGAUGGAAUUGUAUCCAAC	chr2:153520603-153520850(-)$1	247	133	155	10.8277
CUGACUCCUAAACUGAUGGAAG	chr8:117669430-117669654(-)$1	224	148	170	10.7966
UUUCCAGGAACUCACCCGGUAA	chr5:176859606-176859841(+)$1	235	183	205	10.9476
GCUCCCUGCUGCCCCAGGAUUA	chr19:58904259-58904472(+)$1	213	66	88	9.8976
UGCUUCGAAAAGCCUGGAAAGA	chr10:22608825-22609085(+)$1	260	65	87	10.6842
GCAUAUCUAUGAAAAGAGCGGU	chr7:98984260-98984474(+)$1	214	78	100	13.6466
UUAGAGCUGACUCAAGCCUGUC	chr19:5785351-5785573(-)$1	222	8	30	12.9237
AUGUUGUAUGCCUGGUAUAUGA	chr17:30533852-30534148(+)$1	296	128	150	8.5379
CCCCAGAUGUGCCAAUCAUGGA	chr9:35059016-35059263(-)$1	247	220	242	10.1882

#DB
(((..(((......)))..)))	chr14:31813114-31813358(-)$1	1	87	109	13.0603
(((..(((......)))..)))	chr1:223940453-223940686(+)$1	1	195	217	13.2604
(((..(((......)))....)	chr22:38273658-38273888(+)$1	1	178	200	13.2583
.(((.(((......))).))).	chr11:118888085-118888308(-)$1	1	90	112	11.6630
(....(((......)))....)	chr14:21828568-21828781(-)$1	1	98	120	13.4656
..((((((......))))))..	chr4:57335776-57336000(+)$1	1	175	197	11.4767
((.(((((......))))))))	chr12:120637148-120637364(-)$1	1	60	82	11.3276
((((.(((......))).))))	chr16:66967821-66968039(-)$1	1	5	27	13.0133
.(((((((......))))))).	chr17:38546273-38546491(-)$1	1	56	78	12.4159
(((...((......))....))	chr1:28939706-28939936(-)$1	1	201	223	12.7111
.(((..((......)))))...	chr2:44175160-44175421(-)$1	1	129	151	11.4179
))))((((......))))((..	chr3:53276099-53276312(-)$1	1	65	87	10.2658
..((((((......))))))..	chr22:19423344-19423556(+)$1	1	25	47	11.1161
(.((((((......))))))))	chr19:8028473-8028694(-)$1	1	39	61	10.3634
((((.(((......))).))))	chr16:2813467-2813671(+)$1	1	168	190	13.0133
((((((((......)))))...	chr3:42632917-42633150(+)$1	1	121	143	11.4414
.(((((((......))))))).	chr11:71154940-71155169(-)$1	1	135	157	12.6370
.((((.((......))))))))	chr12:118573981-118574192(+)$1	1	109	131	11.4114
(...((((......))))))))	chr3:184042672-184042886(+)$1	1	75	97	10.8613
((((((((......))))))).	chr17:1780405-1780610(+)$1	1	25	47	10.3041
((((((((......))))))))	chr7:127231167-127231388(+)$1	1	115	137	12.4129
.(((((((......))))))).	chr3:122121568-122121818(+)$1	1	60	82	10.8277
((((((((......))))))))	chr19:13050342-13050545(+)$1	1	23	45	13.0147
(.((((((......)).)))).	chr2:242202131-242202389(-)$1	1	109	131	11.2214
.((..(((......)))..)))	chr16:2811959-2812173(+)$1	1	148	170	12.1658
.(((((((......))).))))	chr19:6457451-6457701(-)$1	1	153	175	11.8173
((((((((((...)))))))))	chr7:141341509-141341809(+)$1	1	205	227	8.5379
((((.(((......)))....)	chr11:67166513-67166734(-)$1	1	149	171	13.3648
((...(((......))))))))	chr10:6154154-6154417(+)$1	1	108	130	12.9095
((.(((((......))))).))	chr1:155180262-155180516(+)$1	1	139	161	11.2889
.(((..((......))..))).	chr16:30078823-30079041(+)$1	1	127	149	12.3066
.(((((((......))).))))	chr22:38258875-38259077(+)$1	1	121	143	12.4256
(((((.((......))..))))	chr8:48810970-48811181(-)$1	1	10	32	11.0505
((.(((((......)))))..)	chr1:45243223-45243428(+)$1	1	123	145	10.8715
(((((.((......))))))))	chr9:135224620-135224828(-)$1	1	162	184	12.2905
((((.(((......))))))))	chr6:31750397-31750607(-)$1	1	95	117	12.7398
(.((((((......))..))))	chr11:67864415-67864697(-)$1	1	49	71	11.1872
...(((((......)))))...	chr10:121274973-121275175(-)$1	1	55	77	11.7146
(((..(((......)))..)))	chr5:175782551-175782763(-)$1	1	49	71	13.0603
.(((((((......))))))).	chr11:64875173-64875380(+)$1	1	125	147	12.6370
((((((((......)))(((((	chr11:62459752-62460048(-)$1	1	167	189	10.6854
...(((((......)))))...	chr6:35837316-35837549(-)$1	1	54	76	10.1264
(((...((......))...)))	chr2:181925433-181925640(+)$1	1	78	100	12.2354
.((..(((......))).))..	chr18:10539689-10539904(+)$1	1	149	171	12.6403
((((.(((......))).))))	chr13:28009885-28010118(-)$1	1	153	175	13.0133
((((.(((......))))))))	chr15:69080008-69080246(-)$1	1	55	77	12.1511
.(((((((......).)))).)	chr9:111741468-111741711(-)$1	1	35	57	10.6434
.(((..((......))...)))	chr7:139416173-139416454(-)$1	1	10	32	12.0125
.(((((((......))))))).	chr2:153520603-153520850(-)$1	1	133	155	10.8277
((..(..(......)..)..))	chr8:117669430-117669654(-)$1	1	148	170	10.7966
(..((.((......)).)).))	chr5:176859606-176859841(+)$1	1	183	205	10.9476
((..((((......))))....	chr19:58904259-58904472(+)$1	1	66	88	9.8976
((((((.(......).))...)	chr10:22608825-22609085(+)$1	1	65	87	10.6842
((...(((......)))...))	chr7:98984260-98984474(+)$1	1	78	100	13.6466
.(((.(((......)))))).)	chr19:5785351-5785573(-)$1	1	8	30	12.9237
(((((((((((...))))))))	chr17:30533852-30534148(+)$1	1	128	150	8.5379
..((((((......))).))))	chr9:35059016-35059263(-)$1	1	220	242	10.1882

#PSSM
e : 0.19	d : 0.12	: : 0.08	[ : 0.08	g : 0.07	# : 0.07	! : 0.07	c : 0.05	f : 0.05	= : 0.05	" : 0.01	b : 0.01	J : 0.01	i : 0.01	% : 0.01	F : 0.01	$ : 0.01	h : 0.01	
e : 0.17	g : 0.15	d : 0.14	c : 0.12	f : 0.05	# : 0.05	[ : 0.05	= : 0.05	b : 0.05	" : 0.03	! : 0.03	i : 0.01	F : 0.01	h : 0.01	: : 0.01	
g : 0.15	d : 0.14	e : 0.12	c : 0.12	f : 0.10	# : 0.05	[ : 0.05	" : 0.05	= : 0.05	b : 0.05	! : 0.05	i : 0.01	F : 0.01	
e : 0.19	! : 0.14	g : 0.14	d : 0.12	c : 0.10	f : 0.08	" : 0.08	= : 0.05	# : 0.01	i : 0.01	F : 0.01	b : 0.01	
! : 0.15	d : 0.15	[ : 0.14	g : 0.12	e : 0.10	f : 0.07	" : 0.07	= : 0.05	b : 0.03	# : 0.01	i : 0.01	F : 0.01	a : 0.01	c : 0.01	
c : 0.36	e : 0.10	g : 0.10	d : 0.10	! : 0.07	[ : 0.07	f : 0.05	= : 0.05	" : 0.03	i : 0.01	b : 0.01	
c : 0.36	b : 0.19	e : 0.10	g : 0.10	d : 0.07	f : 0.05	= : 0.05	i : 0.01	! : 0.01	[ : 0.01	
c : 0.36	b : 0.19	e : 0.10	g : 0.10	f : 0.05	d : 0.05	= : 0.05	a : 0.05	i : 0.01	
o : 0.96	= : 0.03	
o : 0.96	= : 0.03	
o : 0.96	l : 0.01	= : 0.01	
o : 0.96	l : 0.03	
o : 0.96	l : 0.03	
o : 0.96	= : 0.01	l : 0.01	
c : 0.36	b : 0.19	e : 0.10	g : 0.10	f : 0.05	d : 0.05	= : 0.05	a : 0.05	i : 0.01	
c : 0.36	b : 0.19	e : 0.10	g : 0.10	f : 0.05	d : 0.05	= : 0.05	] : 0.03	i : 0.01	2 : 0.01	
c : 0.38	g : 0.12	e : 0.10	d : 0.08	2 : 0.07	f : 0.05	= : 0.05	] : 0.03	3 : 0.03	4 : 0.01	i : 0.01	b : 0.01	
] : 0.14	e : 0.14	g : 0.14	2 : 0.12	d : 0.10	4 : 0.07	f : 0.07	= : 0.05	3 : 0.05	c : 0.03	b : 0.03	i : 0.01	a : 0.01	
e : 0.19	g : 0.14	d : 0.12	2 : 0.08	c : 0.08	f : 0.08	4 : 0.07	3 : 0.07	b : 0.05	= : 0.05	i : 0.01	8 : 0.01	
g : 0.14	d : 0.14	e : 0.12	c : 0.12	4 : 0.08	f : 0.08	b : 0.05	3 : 0.05	= : 0.05	] : 0.03	2 : 0.03	6 : 0.01	i : 0.01	7 : 0.01	8 : 0.01	
g : 0.17	e : 0.15	c : 0.12	d : 0.10	4 : 0.07	3 : 0.07	= : 0.05	2 : 0.03	b : 0.03	f : 0.03	] : 0.03	6 : 0.01	! : 0.01	i : 0.01	7 : 0.01	h : 0.01	8 : 0.01	
e : 0.17	d : 0.12	g : 0.08	c : 0.07	: : 0.07	3 : 0.07	f : 0.05	2 : 0.05	b : 0.05	= : 0.05	] : 0.03	h : 0.03	6 : 0.01	! : 0.01	i : 0.01	4 : 0.01	7 : 0.01	8 : 0.01	E : 0.01	

#score	668.2890910620429
#seq	57
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_transcript_m3_run1.txt

#BEAR
ffff####gggggggooooooggggggg22ffffff	chr12:56716434-56716744(-)$1	310	3	39	13.5693
=========[a[eeeeellleeeee]a]========	chr9:33981640-33981967(-)$1	327	28	64	12.0815
eeeeedddd[bb[bboooooobb]bb]dddd]eeee	chr5:175957503-175957800(-)$1	297	59	95	12.4060
eeddddccc[eeeeeooooooeeeee22ccc]dddd	chr12:16035252-16035590(+)$1	338	268	304	14.1551
ccclllcccdddd[aooooooaddddffffffdddd	chr17:17718982-17719288(-)$1	306	26	62	11.8442
e[iiiiiiiiiddddoooooodddd]iiiiiiiii3	chr6:31762692-31762956(-)$1	264	126	162	15.3688
======="""bb[aooooooa]bb333=========	chr7:100277156-100277469(-)$1	313	202	238	15.7268
!ggggggg$$$$$bboooooobb666666ggggggg	chr6:34213561-34213796(+)$1	235	166	202	11.4743
c[ccc####eeeee[ammmmaeeeee22ccc]ccc]	chr8:11702118-11702401(-)$1	283	206	242	11.6063
fff!!bb####ddddoooooodddd333bb333fff	chr3:13359048-13359347(-)$1	299	144	180	14.9315
!!===========[bboooooobb===========2	chr12:56991482-56991736(-)$1	254	84	120	14.4212
iiiiii[ccc####bblllbbccc]iiiiiiiii22	chr19:15533331-15533598(-)$1	267	167	203	10.3545
eeee[bb!!ccccccooooooccc]ccc22bb333e	chrX:153284547-153284788(-)$1	241	118	154	14.1312
d[a!!ffffff[cccooooooccc]ffffff22add	chr19:56203159-56203413(+)$1	254	77	113	13.3279
iiiii"""dddd[cccmmmmcccdddd]iiiiiiii	chr19:24187167-24187408(-)$1	241	72	108	10.7444
dd[ddddddddddddoooooodddd]dddd]dddd3	chr15:59397284-59397567(+)$1	283	214	250	13.1221
bccc[dddd"""cccnnnnnccc4444dddd]ccc]	chr17:30821450-30821733(-)$1	283	142	178	11.6698
ccca[ccc!!eeeeemmmmeeeee22ccc]a]ccc]	chr15:75137253-75137520(-)$1	267	184	220	10.5046
cchhhhhhhh"""bboooooobb333hhhhhhhh33	chr19:40884066-40884382(+)$1	316	1	37	11.7642
======="""bb[aooooooa]bb333=========	chr7:100277083-100277356(-)$1	273	89	125	15.7268
eeeeea[gggggggooooooggggggg333a]eeee	chr16:85672292-85672614(+)$1	322	194	230	13.3617
"""dddd!!a[ddddnnnnndddd]a22dddddddd	chr17:45727212-45727520(+)$1	308	259	295	10.5592
""ccc[ccc[bbcccooooooccc]bb]ccc]ccc2	chr12:53859615-53859820(+)$1	205	132	168	15.3631
bb!!ccc!!ffffffooooooffffff22ccc]bb]	chr4:1741473-1741738(+)$1	265	19	55	13.1763
dddda[cccccca[cccnnnnnccc]a]ccc]ccc]	chr6:30690239-30690472(+)$1	233	76	112	10.0066
ffff[dddd[eeeeeooooooeeeeedddd]fffff	chr10:99010720-99011085(-)$1	365	295	331	13.2846
ciiiiiiiii[a[bboooooobb]a]iiiiiiiii5	chr17:48212007-48212245(-)$1	238	67	103	14.3277
ddddd[dddd[a[ddddllldddd]a333ddddddd	chr22:21272224-21272513(+)$1	289	135	171	10.0126
mmdddd:dddd[cccooooooccc]ddddeeeee[e	chr17:29058625-29058933(+)$1	308	194	230	10.9872
gggg!!ccca[ddddnnnnndddd22a]ccc]gggg	chr12:57023849-57024182(-)$1	333	241	277	11.5842
eeeee==========oooooo==========88888	chr7:100064124-100064364(-)$1	240	169	205	13.1272
dddd!!ccc"""bboooooobb333ccc333dddd2	chr1:47694952-47695200(-)$1	248	173	209	13.0605
bb[ccc####eeeee[aooooooa]eeeee22ccc]	chr19:2339577-2339871(+)$1	294	48	84	12.3707
cccccc"""ddddrrrrrrrrrdddd22ccc]ccc:	chr8:22471563-22471853(+)$1	290	7	43	9.9346
!eeeee[a[bb[cccooooooccc]bba]eeeee22	chr11:63743814-63744077(+)$1	263	138	174	13.6425
=====####dddd[aooooooa]dddd4444=====	chr19:583141-583449(+)$1	308	154	190	15.6082
:ccc[dddd[eeeeeooooooeeeee22dddd]ccc	chr16:88870102-88870373(+)$1	271	117	153	13.4450
cc"""bb$$$$$cccooooooccc333bb333ccc:	chr22:50022860-50023173(-)$1	313	24	60	13.8355
d[bb[dddd[bb[bboooooobbbb]ddddbbdddd	chr16:67580394-67580713(+)$1	319	137	173	11.7046
eeeee####ffffffooooooffffff]eeeee]cc	chr7:100075662-100075986(-)$1	324	244	280	13.2697
eee[dddd[bb[cccooooooccc]bb22dddd333	chr16:204320-204565(+)$1	245	165	201	14.0041
eeeee[bbffffffaooooooa]ffffff]bb]eee	chr8:145749177-145749445(+)$1	268	162	198	11.8054
ffff[dddd[a[cccooooooccc]a]ddddfffff	chr19:3053321-3053561(-)$1	240	174	210	14.3262
dd[accc"""eeeeeooooooeeeee333ccc]a]d	chr19:40329574-40329835(-)$1	261	138	174	15.4981
qqbbeeeee[ddddoooooodddd]eeeeeccc[cc	chr7:150070529-150070770(+)$1	241	183	219	10.5524
$dddd"""dddd[bboooooobbdddd]dddd22ff	chr12:124839931-124840222(-)$1	291	70	106	12.6811
##bb[eeeee[ddddoooooodddd]eeeee]bb33	chr5:154181479-154181730(+)$1	251	123	159	13.0836
##ccc[ggggggg[cccmmmmccc22gggggggccc	chr20:61915969-61916255(+)$1	286	178	214	10.0533
[ffffff"""eeeeeooooooeeeee666666ffff	chr1:43395437-43395755(-)$1	318	206	242	11.9385
gggggga"""eeeeeooooooeeeee7777777a]g	chr1:40029245-40029507(-)$1	262	41	77	11.6537
bb[ccc!!bb[eeeeeooooooeeeee]bb22ccc]	chr7:142651030-142651308(-)$1	278	4	40	12.2785
bb[ffffff!!ddddooooooddddffffffbb:bb	chr19:13063899-13064191(+)$1	292	216	252	10.7463
eeee!!ffffffcccooooooccc333ffffff]ee	chr3:9861311-9861563(+)$1	252	114	150	14.0625
##ffffffgggggggooooooggggggg]ffffff4	chr19:14199064-14199352(-)$1	288	229	265	13.2034
fff!!dddd[cccbboooooobb]ccc4444dddd2	chr19:34887203-34887437(+)$1	234	9	45	13.9337

#otherMatches

#Seq PSSM
gaauaaggCCUAGUAUUUACCUGUUAGGGGAUUUUC	chr12:56716434-56716744(-)$1	310	3	39	13.5693
AGAUAAUGUGAAAAUUACUAUGAUUCUGACAUUAUU	chr9:33981640-33981967(-)$1	327	28	64	12.0815
CUCCAGCGGCUCGACAACGACGUGGACCUGCGUGGG	chr5:175957503-175957800(-)$1	297	59	95	12.4060
GCCCAGCCCAGCCCUAGUGUCAGGGCGGGGGCCUGG	chr12:16035252-16035590(+)$1	338	268	304	14.1551
CCCCGUGGGCCACCGUUUCUUCGUGGAUGGGGACUG	chr17:17718982-17719288(-)$1	306	26	62	11.8442
CCGCCUGCCGGCCCUGGAGCAGGGGCCCGGUGGGCU	chr6:31762692-31762956(-)$1	264	126	162	15.3688
UGCAGGGGUCACCGUGUUCCCUGUCUGCCUUGUACC	chr7:100277156-100277469(-)$1	313	202	238	15.7268
GCCCACGAUCCCCUCCCCCAAGAUACUCUUUGUGGG	chr6:34213561-34213796(+)$1	235	166	202	11.4743
GAGCCCUUUGGAGAACGCCAGUCUCCCAGGCCCCCU	chr8:11702118-11702401(-)$1	283	206	242	11.6063
GCCCAGCCUAUGCCUCCCACUAGGCCGCGUGAAGGU	chr3:13359048-13359347(-)$1	299	144	180	14.9315
CAUGCUGAGUUUCCAGCCUUUUCUGAAACUCAGUAG	chr12:56991482-56991736(-)$1	254	84	120	14.4212
CCGGGACCUGCCCCGGACCCCCAGUUCCUGGGUUGA	chr19:15533331-15533598(-)$1	267	167	203	10.3545
AGCCUCCACCUUCCUCUCCCCAGGUAAGAGGGCCCG	chrX:153284547-153284788(-)$1	241	118	154	14.1312
GACCCCUGGGGCGGCCCCCCUGUCCCUCCAGCUGCU	chr19:56203159-56203413(+)$1	254	77	113	13.3279
GGAGUCCCUCACCAAAGAACUUUGUGAAACUCUUAG	chr19:24187167-24187408(-)$1	241	72	108	10.7444
UGCCCGGGGACCGCUCUCAGAGGCGAGUCCGUCGGC	chr15:59397284-59397567(+)$1	283	214	250	13.1221
UCCACGGUCCCUGUUCAAUAAGCCAAAGACCCUGGU	chr17:30821450-30821733(-)$1	283	142	178	11.6698
GCCCAGCACAGACCUGGCAGGGUUCUUGCCGUGGCU	chr15:75137253-75137520(-)$1	267	184	220	10.5046
CCGCCUGCUCUGAGGCCCGAUCCAGUGGGCAGGCCA	chr19:40884066-40884382(+)$1	316	1	37	11.7642
UGCAGGGGUCACCGUGUUCCCUGUCUGCCUUGUACC	chr7:100277083-100277356(-)$1	273	89	125	15.7268
CUGGGCCGGGAGCCUGCGGUGGCUUCCUCUGUCCCA	chr16:85672292-85672614(+)$1	322	194	230	13.3617
AAUGGGUUUGUGGUGacccccgccccccaccccacc	chr17:45727212-45727520(+)$1	308	259	295	10.5592
ACAGCCAGAUGUAAGUUUUGUUUUCACUUCUUGUUU	chr12:53859615-53859820(+)$1	205	132	168	15.3631
ACCUGGAACUGGGGUAAGGAGGCCCCGUCUCCUGUc	chr4:1741473-1741738(+)$1	265	19	55	13.1763
CUGGGAGGUGAUCAGUGAUGAACAUGGCAUCGACCC	chr6:30690239-30690472(+)$1	233	76	112	10.0066
gcuggagugcaguagugcuaucugcucacugcagcu	chr10:99010720-99011085(-)$1	365	295	331	13.2846
GGGGUGGGGGCGUUGCCUCAACACCUCCCCCAUCCC	chr17:48212007-48212245(-)$1	238	67	103	14.3277
GGACUAUGUGCUGUCGGUGUCCGAGAACUCGCGGGU	chr22:21272224-21272513(+)$1	289	135	171	10.0126
UGGGGCGAGCGGUUGGUAUUGCAGGCGCUUACUCUC	chr17:29058625-29058933(+)$1	308	194	230	10.9872
AGCCCCGAGCCCGGCUGGACGCCGCUGCCUCAGGUU	chr12:57023849-57024182(-)$1	333	241	277	11.5842
UUCAGGUUGuuauuaaaauaauaauaauaauuaaaa	chr7:100064124-100064364(-)$1	240	169	205	13.1272
GCAGAUCGCCCAGGACCACACCGCAGCGUAACUGCA	chr1:47694952-47695200(-)$1	248	173	209	13.0605
CGCGGGCCCUGCCACCCUCUGCUGUGUGGUCUCCUC	chr19:2339577-2339871(+)$1	294	48	84	12.3707
GCUCAGUCUGGAUUCCCUUGCUGUCUUCCUGUAGCC	chr8:22471563-22471853(+)$1	290	7	43	9.9346
UGGGGGUCACUGACCCUGCUUGGUGGGGUCCCCCUU	chr11:63743814-63744077(+)$1	263	138	174	13.6425
CCUCCUUGUCUGUGCAUCCGGGGGCAGCUCUGGAGG	chr19:583141-583449(+)$1	308	154	190	15.6082
UCGCCGCGCACUCCGCCGCCAUGGAGCAGCGCCGCG	chr16:88870102-88870373(+)$1	271	117	153	13.4450
GCCCUGUACCCCAGCUUCCCUGCUccagccuagccc	chr22:50022860-50023173(-)$1	313	24	60	13.8355
CCUGCAGUCAAGUGCCUCCCAGCCUCGGCUCAGCAC	chr16:67580394-67580713(+)$1	319	137	173	11.7046
CCUUGUUCCAGGGGUGCCUGAGCCCCUUCAAGGAGC	chr7:100075662-100075986(-)$1	324	244	280	13.2697
AUAAACCAAUGAACGAAGCAGCGUCCACCUGGUCUC	chr16:204320-204565(+)$1	245	165	201	14.0041
CCACUCCCGCAGCCCUCCAGUGUGGCUGCAGGCGGU	chr8:145749177-145749445(+)$1	268	162	198	11.8054
UGGGCACCCCGAGUCUCCCCCGACCCCGGGUCCCAG	chr19:3053321-3053561(-)$1	240	174	210	14.3262
AUGUCUCUGACAUCGUUGGUCCGGUGAGUGAGUAGA	chr19:40329574-40329835(-)$1	261	138	174	15.4981
CAGCGCUGAGAGCCUCCCCUGGCUGUCAGCAGCACU	chr7:150070529-150070770(+)$1	241	183	219	10.5524
CUGGGCCCCACAAUGGACAGACAUGUGCUCCACAGG	chr12:124839931-124840222(-)$1	291	70	106	12.6811
CUGCCUCAGCAGCUGCCUUCCCAGCAGCUGAUGUCC	chr5:154181479-154181730(+)$1	251	123	159	13.0836
GUGCUGCCACUGCCGACCCGUGUCCCGUGGUGGAGC	chr20:61915969-61916255(+)$1	286	178	214	10.0533
AGAGUGGUACGGGCAUGGCCCUGCCCUCCUCCCCAC	chr1:43395437-43395755(-)$1	318	206	242	11.9385
ACGGGUCUUUGCCCAGACUGAUGGGCUUUAAUUGUA	chr1:40029245-40029507(-)$1	262	41	77	11.6537
GCUCUUCCAGAUGGUCACUAUCGACCAGCUCAAGGU	chr7:142651030-142651308(-)$1	278	4	40	12.2785
GGCGACAGAUGGGCCCCUCUUGGCCUCUGUCCCAGC	chr19:13063899-13064191(+)$1	292	216	252	10.7463
UCUCCAGGAAGGAGGAAAAUCCCUGCCUCUUCCAGA	chr3:9861311-9861563(+)$1	252	114	150	14.0625
UCCAAGGAGAGGGCACCCUCUUGUCCUUAUCUUUGC	chr19:14199064-14199352(-)$1	288	229	265	13.2034
UGGAGUCCAAUGGGAAAUACAUCACCAAAUCUGGAA	chr19:34887203-34887437(+)$1	234	9	45	13.9337

#DB
((((....(((((((......)))))))..))))))	chr12:56716434-56716744(-)$1	1	3	39	13.5693
(((((((((.(.(((((...))))).).))))))))	chr9:33981640-33981967(-)$1	1	28	64	12.0815
(((((((((.((.((......)).)).)))).))))	chr5:175957503-175957800(-)$1	1	59	95	12.4060
(((((((((.(((((......)))))..))).))))	chr12:16035252-16035590(+)$1	1	268	304	14.1551
(((...)))((((.(......)))))((((((((((	chr17:17718982-17719288(-)$1	1	26	62	11.8442
(.(((((((((((((......)))).))))))))).	chr6:31762692-31762956(-)$1	1	126	162	15.3688
(((((((...((.(......).))...)))))))))	chr7:100277156-100277469(-)$1	1	202	238	15.7268
.(((((((.....((......))......)))))))	chr6:34213561-34213796(+)$1	1	166	202	11.4743
(.(((....(((((.(....))))))..))).))).	chr8:11702118-11702401(-)$1	1	206	242	11.6063
(((..((....((((......))))...))...)))	chr3:13359048-13359347(-)$1	1	144	180	14.9315
..(((((((((((.((......))))))))))))).	chr12:56991482-56991736(-)$1	1	84	120	14.4212
((((((.(((....((...))))).)))))))))..	chr19:15533331-15533598(-)$1	1	167	203	10.3545
((((.((..((((((......))).)))..))...)	chrX:153284547-153284788(-)$1	1	118	154	14.1312
(.(..((((((.(((......))).))))))..)))	chr19:56203159-56203413(+)$1	1	77	113	13.3279
(((((...((((.(((....))))))).))))))))	chr19:24187167-24187408(-)$1	1	72	108	10.7444
((.((((((((((((......)))).)))).)))).	chr15:59397284-59397567(+)$1	1	214	250	13.1221
((((.((((...(((.....)))....)))).))).	chr17:30821450-30821733(-)$1	1	142	178	11.6698
((((.(((..(((((....)))))..))).).))).	chr15:75137253-75137520(-)$1	1	184	220	10.5046
((((((((((...((......))...))))))))..	chr19:40884066-40884382(+)$1	1	1	37	11.7642
(((((((...((.(......).))...)))))))))	chr7:100277083-100277356(-)$1	1	89	125	15.7268
((((((.(((((((......)))))))...).))))	chr16:85672292-85672614(+)$1	1	194	230	13.3617
...((((..(.((((.....)))).)..))))))))	chr17:45727212-45727520(+)$1	1	259	295	10.5592
..(((.(((.(((((......))).)).))).))).	chr12:53859615-53859820(+)$1	1	132	168	15.3631
((..(((..((((((......))))))..))).)).	chr4:1741473-1741738(+)$1	1	19	55	13.1763
(((((.(((((((.(((.....))).).))).))).	chr6:30690239-30690472(+)$1	1	76	112	10.0066
((((.((((.(((((......))))))))).)))))	chr10:99010720-99011085(-)$1	1	295	331	13.2846
((((((((((.(.((......)).).))))))))).	chr17:48212007-48212245(-)$1	1	67	103	14.3277
(((((.((((.(.((((...)))).)...)))))))	chr22:21272224-21272513(+)$1	1	135	171	10.0126
..)))).((((.(((......))).))))(((((.(	chr17:29058625-29058933(+)$1	1	194	230	10.9872
((((..((((.((((.....))))..).))).))))	chr12:57023849-57024182(-)$1	1	241	277	11.5842
(((((((((((((((......)))))))))).....	chr7:100064124-100064364(-)$1	1	169	205	13.1272
((((..(((...((......))...)))...)))).	chr1:47694952-47695200(-)$1	1	173	209	13.0605
((.(((....(((((.(......).)))))..))).	chr19:2339577-2339871(+)$1	1	48	84	12.3707
((((((...((((.........))))..))).))).	chr8:22471563-22471853(+)$1	1	7	43	9.9346
.(((((.(.((.(((......))).))).)))))..	chr11:63743814-63744077(+)$1	1	138	174	13.6425
(((((....((((.(......).))))....)))))	chr19:583141-583449(+)$1	1	154	190	15.6082
.(((.((((.(((((......)))))..)))).)))	chr16:88870102-88870373(+)$1	1	117	153	13.4450
((...((.....(((......)))...))...))).	chr22:50022860-50023173(-)$1	1	24	60	13.8355
(.((.((((.((.((......)))).))))))))))	chr16:67580394-67580713(+)$1	1	137	173	11.7046
(((((....((((((......)))))).))))).))	chr7:100075662-100075986(-)$1	1	244	280	13.2697
(((.((((.((.(((......))).))..))))...	chr16:204320-204565(+)$1	1	165	201	14.0041
(((((.(((((((((......).)))))).)).)))	chr8:145749177-145749445(+)$1	1	162	198	11.8054
((((.((((.(.(((......))).).)))))))))	chr19:3053321-3053561(-)$1	1	174	210	14.3262
((.((((...(((((......)))))...))).).)	chr19:40329574-40329835(-)$1	1	138	174	15.4981
..))(((((.((((......)))).)))))(((.((	chr7:150070529-150070770(+)$1	1	183	219	10.5524
.((((...((((.((......)))))).))))..))	chr12:124839931-124840222(-)$1	1	70	106	12.6811
..((.(((((.((((......)))).))))).))..	chr5:154181479-154181730(+)$1	1	123	159	13.0836
..(((.(((((((.(((....)))..))))))))))	chr20:61915969-61916255(+)$1	1	178	214	10.0533
.((((((...(((((......)))))......))))	chr1:43395437-43395755(-)$1	1	206	242	11.9385
(((((((...(((((......))))).......).)	chr1:40029245-40029507(-)$1	1	41	77	11.6537
((.(((..((.(((((......))))).))..))).	chr7:142651030-142651308(-)$1	1	4	40	12.2785
((.((((((..((((......)))))))))))).((	chr19:13063899-13064191(+)$1	1	216	252	10.7463
((((..(((((((((......)))...)))))).))	chr3:9861311-9861563(+)$1	1	114	150	14.0625
..(((((((((((((......))))))).)))))).	chr19:14199064-14199352(-)$1	1	229	265	13.2034
(((..((((.(((((......)).)))....)))).	chr19:34887203-34887437(+)$1	1	9	45	13.9337

#PSSM
e : 0.18	c : 0.12	d : 0.12	f : 0.09	b : 0.09	= : 0.07	! : 0.05	# : 0.05	i : 0.03	" : 0.03	g : 0.03	m : 0.01	: : 0.01	q : 0.01	$ : 0.01	[ : 0.01	
e : 0.18	c : 0.12	f : 0.10	d : 0.10	= : 0.07	[ : 0.07	b : 0.07	g : 0.05	i : 0.05	# : 0.05	" : 0.03	! : 0.01	m : 0.01	q : 0.01	
e : 0.16	c : 0.14	f : 0.12	d : 0.10	= : 0.09	[ : 0.09	i : 0.07	g : 0.05	b : 0.05	" : 0.03	a : 0.01	h : 0.01	! : 0.01	
e : 0.14	d : 0.14	c : 0.14	f : 0.10	= : 0.09	i : 0.07	! : 0.07	g : 0.05	b : 0.05	a : 0.03	l : 0.01	h : 0.01	" : 0.01	[ : 0.01	
c : 0.14	[ : 0.14	e : 0.12	d : 0.12	! : 0.10	= : 0.09	i : 0.07	f : 0.05	g : 0.03	# : 0.01	l : 0.01	h : 0.01	a : 0.01	" : 0.01	
d : 0.21	c : 0.10	= : 0.09	[ : 0.09	# : 0.07	f : 0.07	i : 0.05	b : 0.05	! : 0.05	e : 0.05	g : 0.03	" : 0.03	l : 0.01	h : 0.01	a : 0.01	
d : 0.20	c : 0.16	# : 0.09	= : 0.09	f : 0.09	b : 0.07	[ : 0.05	" : 0.05	i : 0.03	g : 0.03	e : 0.03	h : 0.01	: : 0.01	a : 0.01	! : 0.01	
d : 0.20	c : 0.14	" : 0.14	# : 0.10	! : 0.07	f : 0.07	= : 0.05	g : 0.05	i : 0.03	e : 0.03	h : 0.01	a : 0.01	$ : 0.01	b : 0.01	
d : 0.21	c : 0.12	" : 0.10	# : 0.09	g : 0.07	! : 0.07	f : 0.07	= : 0.05	i : 0.03	$ : 0.03	[ : 0.03	e : 0.03	h : 0.01	b : 0.01	
[ : 0.18	d : 0.14	" : 0.12	f : 0.09	g : 0.07	c : 0.05	b : 0.05	i : 0.03	$ : 0.03	e : 0.03	# : 0.03	= : 0.03	! : 0.03	a : 0.03	h : 0.01	
e : 0.16	d : 0.14	b : 0.12	[ : 0.10	f : 0.09	g : 0.07	c : 0.05	" : 0.05	a : 0.03	$ : 0.03	# : 0.03	= : 0.03	i : 0.01	! : 0.01	
d : 0.23	e : 0.18	[ : 0.10	b : 0.09	g : 0.07	f : 0.07	c : 0.05	" : 0.05	$ : 0.03	= : 0.03	a : 0.03	# : 0.01	
e : 0.20	d : 0.20	c : 0.20	[ : 0.14	g : 0.07	f : 0.05	= : 0.03	$ : 0.01	# : 0.01	" : 0.01	a : 0.01	b : 0.01	
e : 0.20	c : 0.20	d : 0.16	b : 0.14	[ : 0.09	g : 0.05	f : 0.05	a : 0.03	# : 0.01	= : 0.01	r : 0.01	
c : 0.23	e : 0.18	b : 0.16	d : 0.14	o : 0.09	a : 0.05	g : 0.03	f : 0.03	[ : 0.01	= : 0.01	r : 0.01	
o : 0.72	c : 0.05	n : 0.05	e : 0.03	b : 0.03	a : 0.01	m : 0.01	d : 0.01	[ : 0.01	r : 0.01	
o : 0.76	m : 0.05	n : 0.05	c : 0.03	e : 0.01	l : 0.01	d : 0.01	a : 0.01	r : 0.01	
o : 0.78	m : 0.07	n : 0.07	l : 0.05	r : 0.01	
o : 0.78	m : 0.07	n : 0.07	l : 0.05	r : 0.01	
o : 0.78	n : 0.07	m : 0.05	l : 0.03	b : 0.01	e : 0.01	r : 0.01	
o : 0.69	d : 0.07	a : 0.05	e : 0.03	b : 0.03	c : 0.03	g : 0.01	n : 0.01	r : 0.01	m : 0.01	
c : 0.23	e : 0.16	d : 0.16	b : 0.14	g : 0.05	a : 0.05	o : 0.05	] : 0.03	f : 0.03	n : 0.01	= : 0.01	r : 0.01	
c : 0.25	d : 0.20	e : 0.18	b : 0.18	g : 0.05	f : 0.03	] : 0.03	= : 0.01	3 : 0.01	o : 0.01	
d : 0.25	c : 0.21	e : 0.18	b : 0.07	g : 0.05	] : 0.05	f : 0.05	3 : 0.03	6 : 0.01	4 : 0.01	= : 0.01	a : 0.01	
] : 0.21	d : 0.18	e : 0.16	3 : 0.10	g : 0.05	2 : 0.05	f : 0.05	b : 0.03	= : 0.03	c : 0.03	6 : 0.01	4 : 0.01	a : 0.01	
e : 0.18	] : 0.12	d : 0.10	3 : 0.10	f : 0.09	b : 0.07	g : 0.05	c : 0.05	2 : 0.05	a : 0.05	= : 0.03	6 : 0.01	i : 0.01	4 : 0.01	
3 : 0.12	d : 0.12	f : 0.10	2 : 0.09	g : 0.07	c : 0.07	e : 0.07	a : 0.05	i : 0.05	b : 0.05	] : 0.03	6 : 0.03	= : 0.03	4 : 0.01	h : 0.01	7 : 0.01	
] : 0.14	d : 0.12	2 : 0.12	f : 0.09	= : 0.07	3 : 0.07	g : 0.05	i : 0.05	c : 0.05	e : 0.05	6 : 0.03	4 : 0.03	h : 0.01	a : 0.01	b : 0.01	7 : 0.01	
d : 0.18	c : 0.12	= : 0.09	f : 0.09	2 : 0.07	i : 0.07	3 : 0.07	e : 0.07	b : 0.05	6 : 0.03	] : 0.03	4 : 0.03	h : 0.01	g : 0.01	7 : 0.01	
d : 0.20	c : 0.14	e : 0.10	= : 0.09	f : 0.09	i : 0.07	3 : 0.05	2 : 0.03	g : 0.03	b : 0.03	] : 0.03	4 : 0.03	h : 0.01	6 : 0.01	7 : 0.01	
c : 0.16	d : 0.14	f : 0.10	= : 0.09	i : 0.07	e : 0.07	3 : 0.05	b : 0.05	g : 0.03	] : 0.03	a : 0.03	2 : 0.03	4 : 0.03	h : 0.01	6 : 0.01	7 : 0.01	
] : 0.20	d : 0.14	f : 0.10	= : 0.09	i : 0.07	b : 0.07	2 : 0.05	c : 0.05	e : 0.05	g : 0.03	3 : 0.03	h : 0.01	8 : 0.01	6 : 0.01	7 : 0.01	
c : 0.18	d : 0.16	f : 0.10	= : 0.09	e : 0.09	i : 0.07	] : 0.07	g : 0.05	3 : 0.03	2 : 0.03	b : 0.03	h : 0.01	8 : 0.01	7 : 0.01	
c : 0.20	d : 0.14	f : 0.10	= : 0.09	e : 0.09	i : 0.07	a : 0.05	g : 0.03	3 : 0.03	b : 0.03	] : 0.03	h : 0.01	8 : 0.01	[ : 0.01	2 : 0.01	: : 0.01	
c : 0.23	d : 0.16	f : 0.12	= : 0.09	e : 0.07	3 : 0.07	i : 0.05	g : 0.03	2 : 0.03	b : 0.03	] : 0.03	[ : 0.01	8 : 0.01	
d : 0.12	] : 0.12	f : 0.10	e : 0.10	2 : 0.10	3 : 0.09	= : 0.07	c : 0.07	g : 0.05	: : 0.03	i : 0.01	5 : 0.01	8 : 0.01	b : 0.01	4 : 0.01	

#score	701.4156940780455
#seq	55
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF821EXR_HNRNPUL1_UTR_m1_run2.txt

#BEAR
"""eeeee!!fffffflllffffff4444eeeee22	chr22:50013828-50014093(-)$1	265	60	96	24.4678
eeeee[ccc!!eeeeeooooooeeeee333ccc]ee	chr11:93463935-93464181(-)$1	246	194	230	15.8588
:eeeeeccc[ccc[bblllbb]ccc]ccc333eeee	chr17:27047483-27047735(+)$1	252	12	48	17.5305
f[bb[ccc!!fffffflllffffffccc]bb]ffff	chr17:25635327-25635562(+)$1	235	172	208	19.1850
"""eeeee!!fffffflllffffff4444eeeee22	chr22:50013893-50014165(-)$1	272	132	168	24.4678

#otherMatches

#Seq PSSM
gcaccaaggcucacuugggaggugacaagcuuggga	chr22:50013828-50014093(-)$1	265	60	96	24.4678
AGUUUGUAGUAGAGUUAACUCAGGCUCGUUCUAGGG	chr11:93463935-93464181(-)$1	246	194	230	15.8588
AUUCAGUGCUACUUUGUUUCAUAGUCGUAUCCCUGG	chr17:27047483-27047735(+)$1	252	12	48	17.5305
GUAAUUGUAUUAUUUUCAUAAAAUAGCAUUUUCAUU	chr17:25635327-25635562(+)$1	235	172	208	19.1850
gcaccaaggcucacuugggaggugacaagcuuggga	chr22:50013893-50014165(-)$1	272	132	168	24.4678

#DB
...(((((..((((((...))))))....)))))..	chr22:50013828-50014093(-)$1	1	60	96	24.4678
(((((.(((..(((((......)))))...))).))	chr11:93463935-93464181(-)$1	1	194	230	15.8588
.((((((((.(((.((...)).))).)))...))))	chr17:27047483-27047735(+)$1	1	12	48	17.5305
(.((.(((..((((((...))))))))).)).))))	chr17:25635327-25635562(+)$1	1	172	208	19.1850
...(((((..((((((...))))))....)))))..	chr22:50013893-50014165(-)$1	1	132	168	24.4678

#PSSM
" : 0.40	e : 0.20	: : 0.20	f : 0.20	
" : 0.40	e : 0.40	[ : 0.20	
" : 0.40	e : 0.40	b : 0.20	
e : 0.80	b : 0.20	
e : 0.80	[ : 0.20	
e : 0.60	[ : 0.20	c : 0.20	
c : 0.60	e : 0.40	
c : 0.60	e : 0.40	
! : 0.60	c : 0.40	
! : 0.80	[ : 0.20	
f : 0.60	! : 0.20	c : 0.20	
f : 0.60	e : 0.20	c : 0.20	
f : 0.60	e : 0.20	c : 0.20	
f : 0.60	e : 0.20	[ : 0.20	
f : 0.60	e : 0.20	b : 0.20	
f : 0.60	e : 0.20	b : 0.20	
l : 0.80	o : 0.20	
l : 0.80	o : 0.20	
l : 0.80	o : 0.20	
f : 0.60	o : 0.20	b : 0.20	
f : 0.60	o : 0.20	b : 0.20	
f : 0.60	o : 0.20	] : 0.20	
f : 0.60	e : 0.20	c : 0.20	
f : 0.60	e : 0.20	c : 0.20	
f : 0.60	e : 0.20	c : 0.20	
4 : 0.40	e : 0.20	] : 0.20	c : 0.20	
4 : 0.40	c : 0.40	e : 0.20	
4 : 0.40	c : 0.40	3 : 0.20	
4 : 0.40	3 : 0.20	c : 0.20	] : 0.20	
e : 0.40	3 : 0.40	b : 0.20	
e : 0.40	c : 0.20	3 : 0.20	b : 0.20	
e : 0.40	c : 0.20	3 : 0.20	] : 0.20	
e : 0.60	c : 0.20	f : 0.20	
e : 0.60	] : 0.20	f : 0.20	
2 : 0.40	e : 0.40	f : 0.20	
2 : 0.40	e : 0.40	f : 0.20	

#score	101.51023176660001
#seq	5
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_CDS_m2_run2.txt

#BEAR
ccca[ffffff[cccnnnnncccffffff]	chr3:47894658-47894935(-)$1	277	167	197	13.0454
b[bbffffff!!cccmmmmcccffffff]b	chr17:79894570-79894827(-)$1	257	157	187	13.3011
::ffffffccc[cccmmmmccc]ccc8888	chr22:50882115-50882429(+)$1	314	174	204	11.0970
ccc[eeeee!!ddddmmmmdddd22eeeee	chr6:43738480-43738702(+)$1	222	48	78	11.3642
ccc!!ffffff[cccmmmmccc333fffff	chr1:226258943-226259183(+)$1	240	123	153	15.5038
c!!eeeee[bb[bboooooobbbb]eeeee	chr19:10406926-10407190(+)$1	264	228	258	13.1283
ddd!!a!!ccc[cccmmmmccc]ccc22a]	chr17:26940991-26941300(-)$1	309	23	53	13.1425
d!!eeeee[bb[bboooooobbbb]eeeee	chr19:10407044-10407264(+)$1	220	110	140	12.9541

#otherMatches

#Seq PSSM
AGCGCCUGAAGCUGGCGCCCCCACUUCAGC	chr3:47894658-47894935(-)$1	277	167	197	13.0454
CGCUGGCCAGCUGGCUUUUGCCCUGGCCAA	chr17:79894570-79894827(-)$1	257	157	187	13.3011
CACAGGGUCGGGUGUGCUGACAGCCGGCUG	chr22:50882115-50882429(+)$1	314	174	204	11.0970
gccgcgggcaggggccggagcccgcgcccg	chr6:43738480-43738702(+)$1	222	48	78	11.3642
UAUCUGGUUGGCCUUUUUGAAGACACCAAC	chr1:226258943-226259183(+)$1	240	123	153	15.5038
GAGGCCGUGUGUCUGAACGGAgcgggcggc	chr19:10406926-10407190(+)$1	264	228	258	13.1283
UGGAAGAGGCGGGGCUCGUGUCACGCAGCA	chr17:26940991-26941300(-)$1	309	23	53	13.1425
GAGGCCGUGUGUCUGAACGGAgcgggcggc	chr19:10407044-10407264(+)$1	220	110	140	12.9541

#DB
)))(.((((((.(((.....))))))))).	chr3:47894658-47894935(-)$1	1	167	197	13.0454
(.((((((((..(((....))))))))).)	chr17:79894570-79894827(-)$1	1	157	187	13.3011
..(((((((((.(((....))).)))....	chr22:50882115-50882429(+)$1	1	174	204	11.0970
(((.(((((..((((....))))..)))))	chr6:43738480-43738702(+)$1	1	48	78	11.3642
(((..((((((.(((....)))...)))))	chr1:226258943-226259183(+)$1	1	123	153	15.5038
(..(((((.((.((......)))).)))))	chr19:10406926-10407190(+)$1	1	228	258	13.1283
(((..(..(((.(((....))).)))..).	chr17:26940991-26941300(-)$1	1	23	53	13.1425
(..(((((.((.((......)))).)))))	chr19:10407044-10407264(+)$1	1	110	140	12.9541

#PSSM
c : 0.50	d : 0.25	b : 0.12	: : 0.12	
c : 0.37	! : 0.25	[ : 0.12	: : 0.12	d : 0.12	
c : 0.37	! : 0.25	b : 0.12	f : 0.12	d : 0.12	
! : 0.25	e : 0.25	a : 0.12	b : 0.12	f : 0.12	[ : 0.12	
e : 0.37	f : 0.25	! : 0.25	[ : 0.12	
f : 0.50	e : 0.37	a : 0.12	
f : 0.50	e : 0.37	! : 0.12	
f : 0.50	e : 0.37	! : 0.12	
f : 0.37	c : 0.25	[ : 0.25	e : 0.12	
f : 0.37	c : 0.25	b : 0.25	! : 0.12	
f : 0.25	! : 0.25	c : 0.25	b : 0.25	
[ : 0.75	! : 0.12	d : 0.12	
c : 0.62	b : 0.25	d : 0.12	
c : 0.62	b : 0.25	d : 0.12	
c : 0.62	o : 0.25	d : 0.12	
m : 0.62	o : 0.25	n : 0.12	
m : 0.62	o : 0.25	n : 0.12	
m : 0.62	o : 0.25	n : 0.12	
m : 0.62	o : 0.25	n : 0.12	
c : 0.50	o : 0.25	n : 0.12	d : 0.12	
c : 0.62	b : 0.25	d : 0.12	
c : 0.62	b : 0.25	d : 0.12	
] : 0.25	b : 0.25	c : 0.12	f : 0.12	d : 0.12	3 : 0.12	
f : 0.25	c : 0.25	b : 0.25	2 : 0.12	3 : 0.12	
f : 0.25	c : 0.25	] : 0.25	2 : 0.12	3 : 0.12	
f : 0.37	e : 0.37	c : 0.25	
f : 0.37	e : 0.37	8 : 0.12	2 : 0.12	
f : 0.37	e : 0.37	8 : 0.12	2 : 0.12	
e : 0.37	f : 0.25	] : 0.12	8 : 0.12	a : 0.12	
e : 0.37	] : 0.25	b : 0.12	8 : 0.12	f : 0.12	

#score	103.53681658060002
#seq	8
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_UTR_m3_run2.txt

#BEAR
!!ddddpppppppdddd444	chr13:114138403-114138670(-)$1	267	50	70	14.4098
ffffffpppppppffffff:	chr5:133726109-133726333(+)$1	224	149	169	14.6704
ffffffpppppppffffffF	chr17:15933129-15933523(-)$1	394	210	230	15.0912
ggggggpppppppggggggg	chr3:125165464-125165734(-)$1	270	73	93	15.2661
b[ddddpppppppdddd]bb	chr8:102211043-102211284(-)$1	241	107	127	13.3295
ggggggpppppppggggggg	chr1:118420072-118420366(-)$1	294	206	226	15.2661
"""cccpppppppccc]ddd	chr6:75965348-75965581(-)$1	233	160	180	14.5558
dd[cccpppppppccc]ddd	chr6:4064509-4064731(+)$1	222	45	65	13.9913
[eeeeepppppppeeeee33	chr12:62902157-62902449(+)$1	292	70	90	15.2587
ggggggpppppppggggggg	chr1:224573144-224573408(-)$1	264	201	221	15.2661
ffffffpppppppffffff:	chr8:73958328-73958582(+)$1	254	148	168	14.6704
[eeeeepppppppeeeee]g	chr8:124384727-124385019(-)$1	292	228	248	15.0222
ffffffpppppppffffff2	chr14:71050190-71050444(-)$1	254	217	237	15.3765
"eeeeepppppppeeeee33	chr12:53848354-53848599(+)$1	245	12	32	15.2400
[eeeeepppppppeeeee33	chr1:29486418-29486677(-)$1	259	92	112	15.2587
dddcccpppppppccc]ddd	chr17:35944526-35944827(-)$1	301	141	161	13.8991
ffffffpppppppffffffG	chr4:122735134-122735404(+)$1	270	239	259	14.9918
ggggggpppppppggggggg	chr8:17143838-17144191(+)$1	353	302	322	15.2661
ffffffpppppppffffffe	chr7:97835402-97835703(+)$1	301	194	214	15.3099
[eeeeepppppppeeeeedd	chr21:17252131-17252420(+)$1	289	50	70	14.6378
#eeeeepppppppeeeee44	chr17:30697379-30697626(+)$1	247	105	125	14.9831
ggggggpppppppggggggg	chr7:44874703-44874998(-)$1	295	274	294	15.2661
ffffffpppppppffffff:	chr5:41730084-41730405(-)$1	321	209	229	14.6704
iiiiiipppppppiiiiiii	chr5:173386984-173387261(+)$1	277	237	257	14.8207
"eeeeepppppppeeeee]f	chr6:83726988-83727277(-)$1	289	235	255	14.8915
""ddddpppppppdddd22d	chr20:5171849-5172170(+)$1	321	151	171	13.7753
ggggggpppppppggggggg	chr7:74016667-74016974(+)$1	307	263	283	15.2661
ffff[apppppppa]fffff	chr1:212911916-212912206(-)$1	290	134	154	15.0134
"""cccpppppppccc]eee	chr4:146080364-146080586(-)$1	222	149	169	14.7751
ddd[bbpppppppbb]dddd	chrX:106366720-106366984(-)$1	264	100	120	13.0535
iiiiiipppppppiiiiiii	chr1:114517328-114517664(+)$1	336	161	181	14.8207
ggggggpppppppggggggg	chr2:38804923-38805175(-)$1	252	101	121	15.2661
""ddddpppppppddddddd	chr5:68473055-68473373(+)$1	318	5	25	13.8816
ffffffpppppppffffff2	chr11:9316610-9316861(-)$1	251	29	49	15.3765
!!ddddpppppppdddd444	chr1:21100305-21100539(-)$1	234	125	145	14.4098
ddd[bbpppppppbb]dddd	chr12:54678124-54678357(+)$1	233	133	153	13.0535
"""cccpppppppccc333f	chr3:197610074-197610343(+)$1	269	162	182	14.9111
ffffffpppppppffffff:	chr1:51820298-51820614(-)$1	316	17	37	14.6704
ffffffpppppppffffff8	chr15:76222271-76222589(+)$1	318	117	137	15.1806
ffff[apppppppa]fffff	chr18:2582644-2582885(+)$1	241	113	133	15.0134
[a!!bbpppppppbb22acc	chr2:192547835-192548132(+)$1	297	62	82	13.3145
"""cccpppppppccc]fff	chr2:33036184-33036498(+)$1	314	214	234	15.0214
ffffffpppppppffffff:	chr18:14100278-14100525(-)$1	247	99	119	14.6704
ffffffpppppppffffff5	chr16:20749299-20749571(-)$1	272	175	195	14.8509
ffffffpppppppffffff]	chr14:39501323-39501577(-)$1	254	198	218	15.5291
#eeeeepppppppeeeee44	chr17:30697426-30697661(+)$1	235	58	78	14.9831
ggggggpppppppggggggg	chr17:19808014-19808340(-)$1	326	57	77	15.2661
###cccpppppppccc4444	chr9:72324421-72324681(-)$1	260	229	249	14.7297
[eeeeepppppppeeeee]c	chr2:239360150-239360446(+)$1	296	122	142	14.9924
ffffffpppppppffffff:	chr1:67411978-67412261(+)$1	283	73	93	14.6704
$$ddddpppppppdddd333	chr21:40669615-40669868(-)$1	253	179	199	14.1283
======ppppppp=======	chr20:5525795-5526021(-)$1	226	188	208	15.1936
"eeeeepppppppeeeee33	chr5:64850762-64851023(-)$1	261	108	128	15.2400
""ddddpppppppdddd]bb	chr1:204523030-204523294(+)$1	264	73	93	13.8017
!!ddddpppppppdddd]gg	chr1:1327542-1327775(-)$1	233	143	163	14.4439
!!ddddpppppppdddd]cc	chr17:57918286-57918533(+)$1	247	4	24	14.3498
ggggggpppppppggggggg	chr6:4064347-4064585(+)$1	238	71	91	15.2661
eee[bbpppppppbb]eeee	chr2:239360261-239360534(+)$1	273	5	25	13.6694
ffffffpppppppffffff2	chr2:152331907-152332135(+)$1	228	166	186	15.3765
fff[bbpppppppbbfffff	chr1:245250613-245250901(+)$1	288	188	208	14.3289
iiiiiipppppppiiiiiii	chr12:69663544-69663768(+)$1	224	137	157	14.8207
cddddapppppppa]dddd]	chr6:163986032-163986329(+)$1	297	3	23	13.7981
ffffffpppppppffffffe	chr4:80237802-80238094(-)$1	292	83	103	15.3099
ddd[bbpppppppbb]dddd	chr13:37402436-37402683(+)$1	247	198	218	13.0535
!ccc[apppppppa]ccc]c	chr6:160199901-160200157(-)$1	256	50	70	14.7010
gggggapppppppa]ggggg	chr8:17152478-17152830(+)$1	352	146	166	15.0629
ffffffpppppppffffff]	chr2:71635478-71635779(+)$1	301	92	112	15.5291

#otherMatches

#Seq PSSM
AACUGGAUAGAGAUCAGAAU	chr13:114138403-114138670(-)$1	267	50	70	14.4098
AAUAUAUCCUGUUUGUAUUU	chr5:133726109-133726333(+)$1	224	149	169	14.6704
uagggggucuaugccccuaa	chr17:15933129-15933523(-)$1	394	210	230	15.0912
UUUUGCUAGCUUUGCAGAAU	chr3:125165464-125165734(-)$1	270	73	93	15.2661
UUUGAUUUACGACAUCACAG	chr8:102211043-102211284(-)$1	241	107	127	13.3295
AUAAUAUUAUUGUUGUUAUU	chr1:118420072-118420366(-)$1	294	206	226	15.2661
AUGUAUGAGUAUAAUGACUU	chr6:75965348-75965581(-)$1	233	160	180	14.5558
UGUAAUGUUCUCAGUUUUGU	chr6:4064509-4064731(+)$1	222	45	65	13.9913
UCUGUUCUGAUUAAGCAGUU	chr12:62902157-62902449(+)$1	292	70	90	15.2587
AGAUUGUGUUCUUCAAUUUU	chr1:224573144-224573408(-)$1	264	201	221	15.2661
UUACAGUAUUUUUCUGUGAC	chr8:73958328-73958582(+)$1	254	148	168	14.6704
uuacauguuuaaaguguaua	chr8:124384727-124385019(-)$1	292	228	248	15.0222
cuuaguccauauugcuaagu	chr14:71050190-71050444(-)$1	254	217	237	15.3765
UUGUGCUUGGUGUGUAUAUA	chr12:53848354-53848599(+)$1	245	12	32	15.2400
UGUUUUAAUUAAAAGAAUCC	chr1:29486418-29486677(-)$1	259	92	112	15.2587
CGCCAUUAUAUGUGUGUGUG	chr17:35944526-35944827(-)$1	301	141	161	13.8991
cuauauagagagaauauaga	chr4:122735134-122735404(+)$1	270	239	259	14.9918
AUCUUGGCAUGAAUGAGAUU	chr8:17143838-17144191(+)$1	353	302	322	15.2661
UUUGUCUCUUCUUGAUGAAG	chr7:97835402-97835703(+)$1	301	194	214	15.3099
AGGAAUUAGUACUAUUCCUG	chr21:17252131-17252420(+)$1	289	50	70	14.6378
GGAUUCUGUCUUUGAGUUGU	chr17:30697379-30697626(+)$1	247	105	125	14.9831
cuuuggauaacccucaaaga	chr7:44874703-44874998(-)$1	295	274	294	15.2661
GGAAUACAAUAAAUAUUCUA	chr5:41730084-41730405(-)$1	321	209	229	14.6704
AUAGUUUGCAAAUGACUAUU	chr5:173386984-173387261(+)$1	277	237	257	14.8207
uuaaaauguggacuuuugug	chr6:83726988-83727277(-)$1	289	235	255	14.8915
UAAAUGUAGUUUGUAUUGUA	chr20:5171849-5172170(+)$1	321	151	171	13.7753
AGAGUGUUGCCUUUACUUUU	chr7:74016667-74016974(+)$1	307	263	283	15.2661
CAACCUGAGAUUAAUGUUGA	chr1:212911916-212912206(-)$1	290	134	154	15.0134
AUGAGAAUUUACGUCUGCAA	chr4:146080364-146080586(-)$1	222	149	169	14.7751
UAUUUGGUUUUAGCAUAUGA	chrX:106366720-106366984(-)$1	264	100	120	13.0535
GUGUACUUAGUGUGUAUGUG	chr1:114517328-114517664(+)$1	336	161	181	14.8207
UAGUAUGAUUCAGGUACUGU	chr2:38804923-38805175(-)$1	252	101	121	15.2661
CUUAGACACCAACUCUACAA	chr5:68473055-68473373(+)$1	318	5	25	13.8816
UGUAGCUUAUUUUGCUACAU	chr11:9316610-9316861(-)$1	251	29	49	15.3765
cUGUUGUAAUUGUUAACUAA	chr1:21100305-21100539(-)$1	234	125	145	14.4098
CAAACUUGAUAUUGGAUUGU	chr12:54678124-54678357(+)$1	233	133	153	13.0535
GUCAGACACCAUCUCUCUAA	chr3:197610074-197610343(+)$1	269	162	182	14.9111
UUUCUUUUGCACUGGGAAAA	chr1:51820298-51820614(-)$1	316	17	37	14.6704
AAGUAUGUCUUGUGUGCUUC	chr15:76222271-76222589(+)$1	318	117	137	15.1806
AUGACCUCUAUUUGUUCAUU	chr18:2582644-2582885(+)$1	241	113	133	15.0134
AGUACACAUUAUAUGGUCAA	chr2:192547835-192548132(+)$1	297	62	82	13.3145
UAUGCUUAAGUUCAGUUCUG	chr2:33036184-33036498(+)$1	314	214	234	15.0214
agaacauauuuguuguuuuc	chr18:14100278-14100525(-)$1	247	99	119	14.6704
AAAUUCAUUAUGAGAAUUUC	chr16:20749299-20749571(-)$1	272	175	195	14.8509
UAAAGCCAGAUAUGUUUUGA	chr14:39501323-39501577(-)$1	254	198	218	15.5291
GGAUUCUGUCUUUGAGUUGU	chr17:30697426-30697661(+)$1	235	58	78	14.9831
AAUGAACAGAGAAUUUAUUC	chr17:19808014-19808340(-)$1	326	57	77	15.2661
UAUCUCCUAAAAUGAGUGUU	chr9:72324421-72324681(-)$1	260	229	249	14.7297
CGGGACCGUGACUGUUUCUG	chr2:239360150-239360446(+)$1	296	122	142	14.9924
UUCUCUGAUUAGGAGAGAAA	chr1:67411978-67412261(+)$1	283	73	93	14.6704
CCAUGAUUAUUUUUUAUUAC	chr21:40669615-40669868(-)$1	253	179	199	14.1283
UAAACUUUGAAUUGGUUUGC	chr20:5525795-5526021(-)$1	226	188	208	15.1936
uccuuacuuagaauaagguu	chr5:64850762-64851023(-)$1	261	108	128	15.2400
AAGCAUUUGAAAUAUGCAGU	chr1:204523030-204523294(+)$1	264	73	93	13.8017
UCGUGGAUUAAUAUCACUAC	chr1:1327542-1327775(-)$1	233	143	163	14.4439
ACUCUGGUUUCAACAGACAC	chr17:57918286-57918533(+)$1	247	4	24	14.3498
UUUGUUUUAAAAUAAUAGAA	chr6:4064347-4064585(+)$1	238	71	91	15.2661
AGUGGCCGGGACCGUGACUG	chr2:239360261-239360534(+)$1	273	5	25	13.6694
GAAAGAAUUUGAAUUUUUCC	chr2:152331907-152332135(+)$1	228	166	186	15.3765
AAGAUGAUCGUAACACUUUA	chr1:245250613-245250901(+)$1	288	188	208	14.3289
ACAAUAGAUGUAGUGUUGUA	chr12:69663544-69663768(+)$1	224	137	157	14.8207
UGAUGCUCUGUAUGUUAUCU	chr6:163986032-163986329(+)$1	297	3	23	13.7981
GCAUUUUAUUUAUAAAUGUG	chr4:80237802-80238094(-)$1	292	83	103	15.3099
GGCUUCUCUCUUUGAUGUUA	chr13:37402436-37402683(+)$1	247	198	218	13.0535
UGCUGUUCACUCUGGAGCCC	chr6:160199901-160200157(-)$1	256	50	70	14.7010
CAGAACUGAGACUGAUUUUG	chr8:17152478-17152830(+)$1	352	146	166	15.0629
AAUGUAACAUAUAUGCAUUU	chr2:71635478-71635779(+)$1	301	92	112	15.5291

#DB
..((((.......))))...	chr13:114138403-114138670(-)$1	1	50	70	14.4098
((((((.......)))))).	chr5:133726109-133726333(+)$1	1	149	169	14.6704
((((((.......)))))))	chr17:15933129-15933523(-)$1	1	210	230	15.0912
((((((.......)))))))	chr3:125165464-125165734(-)$1	1	73	93	15.2661
(.((((.......)))).))	chr8:102211043-102211284(-)$1	1	107	127	13.3295
((((((.......)))))))	chr1:118420072-118420366(-)$1	1	206	226	15.2661
...(((.......))).)))	chr6:75965348-75965581(-)$1	1	160	180	14.5558
((.(((.......))).)))	chr6:4064509-4064731(+)$1	1	45	65	13.9913
.(((((.......)))))..	chr12:62902157-62902449(+)$1	1	70	90	15.2587
((((((.......)))))))	chr1:224573144-224573408(-)$1	1	201	221	15.2661
((((((.......)))))).	chr8:73958328-73958582(+)$1	1	148	168	14.6704
.(((((.......))))).)	chr8:124384727-124385019(-)$1	1	228	248	15.0222
((((((.......)))))).	chr14:71050190-71050444(-)$1	1	217	237	15.3765
.(((((.......)))))..	chr12:53848354-53848599(+)$1	1	12	32	15.2400
.(((((.......)))))..	chr1:29486418-29486677(-)$1	1	92	112	15.2587
((((((.......))).)))	chr17:35944526-35944827(-)$1	1	141	161	13.8991
((((((.......)))))))	chr4:122735134-122735404(+)$1	1	239	259	14.9918
((((((.......)))))))	chr8:17143838-17144191(+)$1	1	302	322	15.2661
((((((.......))))))(	chr7:97835402-97835703(+)$1	1	194	214	15.3099
.(((((.......)))))))	chr21:17252131-17252420(+)$1	1	50	70	14.6378
.(((((.......)))))..	chr17:30697379-30697626(+)$1	1	105	125	14.9831
((((((.......)))))))	chr7:44874703-44874998(-)$1	1	274	294	15.2661
((((((.......)))))).	chr5:41730084-41730405(-)$1	1	209	229	14.6704
((((((.......)))))))	chr5:173386984-173387261(+)$1	1	237	257	14.8207
.(((((.......))))).)	chr6:83726988-83727277(-)$1	1	235	255	14.8915
..((((.......))))..)	chr20:5171849-5172170(+)$1	1	151	171	13.7753
((((((.......)))))))	chr7:74016667-74016974(+)$1	1	263	283	15.2661
((((.(.......).)))))	chr1:212911916-212912206(-)$1	1	134	154	15.0134
...(((.......))).)))	chr4:146080364-146080586(-)$1	1	149	169	14.7751
(((.((.......)).))))	chrX:106366720-106366984(-)$1	1	100	120	13.0535
((((((.......)))))))	chr1:114517328-114517664(+)$1	1	161	181	14.8207
((((((.......)))))))	chr2:38804923-38805175(-)$1	1	101	121	15.2661
..((((.......)))))))	chr5:68473055-68473373(+)$1	1	5	25	13.8816
((((((.......)))))).	chr11:9316610-9316861(-)$1	1	29	49	15.3765
..((((.......))))...	chr1:21100305-21100539(-)$1	1	125	145	14.4098
(((.((.......)).))))	chr12:54678124-54678357(+)$1	1	133	153	13.0535
...(((.......)))...)	chr3:197610074-197610343(+)$1	1	162	182	14.9111
((((((.......)))))).	chr1:51820298-51820614(-)$1	1	17	37	14.6704
((((((.......)))))).	chr15:76222271-76222589(+)$1	1	117	137	15.1806
((((.(.......).)))))	chr18:2582644-2582885(+)$1	1	113	133	15.0134
.(..((.......))..)))	chr2:192547835-192548132(+)$1	1	62	82	13.3145
...(((.......))).)))	chr2:33036184-33036498(+)$1	1	214	234	15.0214
((((((.......)))))).	chr18:14100278-14100525(-)$1	1	99	119	14.6704
((((((.......)))))).	chr16:20749299-20749571(-)$1	1	175	195	14.8509
((((((.......)))))).	chr14:39501323-39501577(-)$1	1	198	218	15.5291
.(((((.......)))))..	chr17:30697426-30697661(+)$1	1	58	78	14.9831
((((((.......)))))))	chr17:19808014-19808340(-)$1	1	57	77	15.2661
...(((.......)))....	chr9:72324421-72324681(-)$1	1	229	249	14.7297
.(((((.......))))).)	chr2:239360150-239360446(+)$1	1	122	142	14.9924
((((((.......)))))).	chr1:67411978-67412261(+)$1	1	73	93	14.6704
..((((.......))))...	chr21:40669615-40669868(-)$1	1	179	199	14.1283
((((((.......)))))))	chr20:5525795-5526021(-)$1	1	188	208	15.1936
.(((((.......)))))..	chr5:64850762-64851023(-)$1	1	108	128	15.2400
..((((.......)))).))	chr1:204523030-204523294(+)$1	1	73	93	13.8017
..((((.......)))).))	chr1:1327542-1327775(-)$1	1	143	163	14.4439
..((((.......)))).))	chr17:57918286-57918533(+)$1	1	4	24	14.3498
((((((.......)))))))	chr6:4064347-4064585(+)$1	1	71	91	15.2661
(((.((.......)).))))	chr2:239360261-239360534(+)$1	1	5	25	13.6694
((((((.......)))))).	chr2:152331907-152332135(+)$1	1	166	186	15.3765
(((.((.......)))))))	chr1:245250613-245250901(+)$1	1	188	208	14.3289
((((((.......)))))))	chr12:69663544-69663768(+)$1	1	137	157	14.8207
((((((.......).)))).	chr6:163986032-163986329(+)$1	1	3	23	13.7981
((((((.......))))))(	chr4:80237802-80238094(-)$1	1	83	103	15.3099
(((.((.......)).))))	chr13:37402436-37402683(+)$1	1	198	218	13.0535
.(((.(.......).))).)	chr6:160199901-160200157(-)$1	1	50	70	14.7010
((((((.......).)))))	chr8:17152478-17152830(+)$1	1	146	166	15.0629
((((((.......)))))).	chr2:71635478-71635779(+)$1	1	92	112	15.5291

#PSSM
f : 0.29	g : 0.14	" : 0.14	[ : 0.08	! : 0.07	d : 0.07	# : 0.04	i : 0.04	b : 0.01	$ : 0.01	= : 0.01	e : 0.01	c : 0.01	
f : 0.29	e : 0.16	g : 0.14	" : 0.10	d : 0.08	! : 0.05	i : 0.04	[ : 0.01	a : 0.01	# : 0.01	$ : 0.01	= : 0.01	c : 0.01	
f : 0.29	d : 0.20	e : 0.16	g : 0.14	" : 0.05	i : 0.04	[ : 0.01	! : 0.01	# : 0.01	= : 0.01	c : 0.01	
f : 0.28	d : 0.14	g : 0.14	e : 0.14	c : 0.11	[ : 0.07	i : 0.04	! : 0.01	= : 0.01	
f : 0.25	d : 0.14	g : 0.14	e : 0.14	c : 0.10	b : 0.08	i : 0.04	[ : 0.04	= : 0.01	
f : 0.25	e : 0.14	d : 0.13	g : 0.13	c : 0.10	b : 0.08	a : 0.07	i : 0.04	= : 0.01	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
f : 0.25	e : 0.14	d : 0.13	g : 0.13	c : 0.10	b : 0.08	a : 0.07	i : 0.04	= : 0.01	
f : 0.25	e : 0.14	d : 0.13	g : 0.13	c : 0.10	b : 0.08	] : 0.07	i : 0.04	= : 0.01	
f : 0.29	d : 0.14	g : 0.14	e : 0.14	c : 0.11	] : 0.05	i : 0.04	2 : 0.01	= : 0.01	
f : 0.29	d : 0.19	e : 0.16	g : 0.14	] : 0.07	i : 0.04	3 : 0.01	2 : 0.01	4 : 0.01	= : 0.01	c : 0.01	
f : 0.31	e : 0.17	g : 0.14	d : 0.11	] : 0.05	4 : 0.04	i : 0.04	3 : 0.02	2 : 0.01	a : 0.01	= : 0.01	c : 0.01	
f : 0.31	g : 0.16	d : 0.13	3 : 0.08	4 : 0.07	] : 0.05	i : 0.04	b : 0.02	e : 0.02	c : 0.02	2 : 0.01	= : 0.01	
g : 0.17	d : 0.13	: : 0.08	f : 0.08	4 : 0.07	3 : 0.07	e : 0.05	c : 0.05	2 : 0.04	i : 0.04	] : 0.04	b : 0.02	F : 0.01	G : 0.01	8 : 0.01	5 : 0.01	= : 0.01	

#score	985.981379840411
#seq	67
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_transcript_m3_run1.txt

#BEAR
[dddd[ddddpppppppdddd]ddddb	chr19:8550423-8550681(+)$1	258	174	201	14.3061
ffffff[cccpppppppccc]ffffff	chr3:182656586-182656891(-)$1	305	34	61	15.7088
fffff!!cccpppppppccc22fffff	chr2:85766841-85767102(+)$1	261	210	237	15.5140
####ffffffpppppppffffffgggg	chr19:5605545-5605821(-)$1	276	143	170	15.0347
iiiiiiicccpppppppccc]iiiiii	chr9:138785714-138785960(-)$1	246	24	51	16.3888
:ccc[eeeeepppppppeeeee22ccc	chr10:21993985-21994210(+)$1	225	196	223	13.7731
)bbgggggggpppppppggggggg]bb	chr22:23578972-23579255(+)$1	283	19	46	13.9131
!eeeee!!bbpppppppbbeeeee22d	chr19:338439-338729(-)$1	290	40	67	14.6368
iiiii[ddddpppppppdddd]iiiii	chr6:150501773-150502061(+)$1	288	165	192	15.6426
cc[bbcccrrrrrrrrrccc]bbccce	chr4:32070018-32070363(+)$1	345	101	128	11.7800
ffff[eeeeepppppppeeeee]ffff	chr2:148721161-148721455(-)$1	294	104	131	14.6518
==========ppppppp==========	chr21:45444882-45445166(+)$1	284	36	63	16.3616
gggggga[bbpppppppbb333a]ggg	chr7:99070664-99070943(+)$1	279	168	195	15.7548
ffffff[bbrrrrrrrrrbb]ffffff	chr16:89520247-89520496(-)$1	249	14	41	11.8618
bb[gggggggrrrrrrrrrggggggg]	chr7:89996463-89996754(+)$1	291	236	263	12.3154
dddd[cccrrrrrrrrrccc]dddd]h	chr17:5472339-5472626(-)$1	287	212	239	11.9274
d[a[ffffffpppppppffffff]a]d	chr1:2164645-2164913(+)$1	268	116	143	14.8970
"""gggggggrrrrrrrrrggggggg5	chr11:692889-693147(-)$1	258	11	38	11.9197
c[ddddddddpppppppdddd333ddd	chr6:45273730-45273969(-)$1	239	89	116	14.7836
ffeeeee[bbpppppppbb]eeeee99	chr19:803029-803282(+)$1	253	209	236	13.4720
b[ccc[ddddrrrrrrrrrddddcccb	chr22:20926384-20926630(+)$1	246	15	42	11.6461
========bbpppppppbb]=======	chr1:27033192-27033443(+)$1	251	205	232	15.9881
fffff!!bbrrrrrrrrrbb333ffff	chr7:6075004-6075252(-)$1	248	47	74	12.2331
ee!!bb[cccpppppppcccbb22eee	chrX:40583387-40583650(-)$1	263	41	68	14.3536
eeeeffffffpppppppffffffFFFF	chr1:169454356-169454600(-)$1	244	194	221	12.8065
c!!eeeee[apppppppaeeeee22cc	chr6:157258660-157258960(+)$1	300	186	213	15.1326
f!!bb[ddddpppppppdddd]bb22f	chr4:32072390-32072639(+)$1	249	152	179	14.2089
bbdddd[cccpppppppcccdddd]bb	chr19:59055764-59056038(+)$1	274	49	76	14.2043
[ccc[eeeeepppppppeeeeeccccc	chr4:2561498-2561754(+)$1	256	13	40	14.8902
"eeeee"""apppppppa333eeeee]	chr10:28883364-28883727(+)$1	363	229	256	15.1316
hh####ddddpppppppddddhhhhhh	chr16:88996557-88996792(-)$1	235	117	144	13.5284
:eeeee[cccpppppppccc]eeeeed	chr1:171524535-171524805(+)$1	270	28	55	14.7397
a[eeeeecccpppppppccc333eeee	chr19:10474123-10474407(-)$1	284	100	127	16.0094
c[ffffffrrrrrrrrrffffff]ccc	chr19:40759390-40759655(-)$1	265	70	97	12.0928
ddd[ccc[bbpppppppbb333cccdd	chr1:230222493-230222746(+)$1	253	31	58	14.9161
fff[ffffffpppppppffffff]fff	chr7:107183935-107184172(-)$1	237	41	68	14.7385
]ddddeeeeepppppppeeeeecccnn	chr7:141478455-141478709(+)$1	254	178	205	12.7563
cccdddd!!apppppppa22dddd333	chr16:47132926-47133181(-)$1	255	167	194	14.2913
dd!!ddddrrrrrrrrrdddd333ddd	chr21:46285786-46286094(-)$1	308	71	98	11.9030
=[cccbb[bbpppppppbb]bb]ccc]	chr7:8108666-8108951(+)$1	285	130	157	14.0623
dd####ddddpppppppdddd22dddd	chr6:15403861-15404104(+)$1	243	186	213	14.1929
dddd!!ddddpppppppdddd]dddd]	chr4:151899268-151899518(-)$1	250	9	36	14.5878
c"""a[ddddpppppppdddd]a4444	chr17:55347154-55347432(+)$1	278	87	114	15.4269
ffffffddddpppppppdddd]fffff	chr8:26152402-26152664(+)$1	262	233	260	14.8073
=======cccpppppppccc]======	chr10:21991177-21991458(+)$1	281	248	275	16.7590
$$$$ffffffpppppppffffff333f	chr19:7515258-7515505(+)$1	247	157	184	14.3608
ffffff[cccpppppppccc]ffffff	chr1:27048149-27048418(+)$1	269	51	78	15.7088
dddd[cccrrrrrrrrrccc]dddd22	chr1:113934757-113935010(+)$1	253	213	240	11.8033
Hiiiiiiiiipppppppiiiiiiiii:	chrX:151141794-151142078(-)$1	284	216	243	14.0897
d!!bb!!cccpppppppccc4444bb2	chr10:82221353-82221668(+)$1	315	261	288	15.0893
ffff"""bbrrrrrrrrrbb333ffff	chr16:89470425-89470654(-)$1	229	199	226	12.0077
!eeeee!!bbpppppppbb333eeeee	chr22:17083959-17084185(+)$1	226	39	66	15.2771
c!!ffffffrrrrrrrrrffffff333	chr22:50799708-50799951(+)$1	243	50	77	12.5800
cc"""eeeeepppppppeeeee22ccc	chr10:103602414-103602724(-)$1	310	120	147	14.7740
#a[gggggggpppppppggggggg]a3	chr22:50183676-50183976(-)$1	300	26	53	15.5601
cc[gggggggrrrrrrrrrggggggg2	chr1:228283802-228284052(+)$1	250	31	58	12.5734
hhhhhh[cccpppppppccc]hhhhhh	chr2:15488599-15488891(-)$1	292	40	67	13.9057
b[eeeee[bbpppppppbb]eeeee]b	chr4:1950032-1950296(+)$1	264	8	35	14.7737
dddd[cccrrrrrrrrrccc]dddd]e	chr4:744088-744380(+)$1	292	235	262	12.0588
c!!dddd[bbpppppppbb]dddd22c	chr1:20218769-20218994(+)$1	225	73	100	14.5022
gggggg[bbrrrrrrrrrbb]gggggg	chrX:73071443-73071683(-)$1	240	52	79	12.6582
eeeee[ddddpppppppdddd]eeeee	chr20:5986667-5986926(+)$1	259	160	187	14.7992

#otherMatches

#Seq PSSM
GCGUGGGCUCCGAGAUCGAGCGCAUGG	chr19:8550423-8550681(+)$1	258	174	201	14.3061
CUCUAGUAGACAUGUACUCUCUUGGAG	chr3:182656586-182656891(-)$1	305	34	61	15.7088
CAGUGGUUAGGUCUUGACUACACACUG	chr2:85766841-85767102(+)$1	261	210	237	15.5140
ggaagucCUUUCCCCAUGGGGACAUUU	chr19:5605545-5605821(-)$1	276	143	170	15.0347
auccagggcagaauaaguguaccuggg	chr9:138785714-138785960(-)$1	246	24	51	16.3888
ugccagcuguggcaguagcagcagggu	chr10:21993985-21994210(+)$1	225	196	223	13.7731
AAGGAGCAGGAAUCAGCCUUGUUCUCU	chr22:23578972-23579255(+)$1	283	19	46	13.9131
accacacuguuuugauugcuguggcuc	chr19:338439-338729(-)$1	290	40	67	14.6368
UUUGGAGAGAUGAUUUUUCUUGCUGAA	chr6:150501773-150502061(+)$1	288	165	192	15.6426
ugugucuguuucuguaccaguaccagg	chr4:32070018-32070363(+)$1	345	101	128	11.7800
gcuuugcaagggguggguuugcugggc	chr2:148721161-148721455(-)$1	294	104	131	14.6518
auucugccaguccccuccugguggaau	chr21:45444882-45445166(+)$1	284	36	63	16.3616
CUUCGGCAGCGAGAGGAGCAAAGUCCG	chr7:99070664-99070943(+)$1	279	168	195	15.7548
UUUGCAUUGUGGAAGGAuuauugugaa	chr16:89520247-89520496(-)$1	249	14	41	11.8618
agucucccauuauuauugugugggagu	chr7:89996463-89996754(+)$1	291	236	263	12.3154
ggugguaauaaauucccuuagcauuug	chr17:5472339-5472626(-)$1	287	212	239	11.9274
CGGGCGUCCUGUUCCUAGGGGCGGUGG	chr1:2164645-2164913(+)$1	268	116	143	14.8970
GUUGUGUUUUGAUGUGGUAAAAGCACU	chr11:692889-693147(-)$1	258	11	38	11.9197
cuggguacuuguggagggaguauggcu	chr6:45273730-45273969(-)$1	239	89	116	14.7836
CGUCCACAGCAGAGUUGGCCGUGGAGA	chr19:803029-803282(+)$1	253	209	236	13.4720
ACACAUAUCUUGAUGUCUUAGAUUGUU	chr22:20926384-20926630(+)$1	246	15	42	11.6461
AUUUCUAACAUUGUGCUUGUUUAGGAA	chr1:27033192-27033443(+)$1	251	205	232	15.9881
GACAUGUGAUGCUGCUAUUCUGAAUGU	chr7:6075004-6075252(-)$1	248	47	74	12.2331
uguuccauaaauaucuauuagguuuau	chrX:40583387-40583650(-)$1	263	41	68	14.3536
CUGAAAGUAGGCAACCACUGCUUUUCU	chr1:169454356-169454600(-)$1	244	194	221	12.8065
GGAGAUGAACGAAUAUAGUCAUCAACU	chr6:157258660-157258960(+)$1	300	186	213	15.1326
aggcaaagaaaaacuuguuuuaugaau	chr4:32072390-32072639(+)$1	249	152	179	14.2089
GCCUCGGCUCUUUCUGCGAGCGGGCGC	chr19:59055764-59056038(+)$1	274	49	76	14.2043
CAGCUGAGCGUCCUUGCCGUUCGCUUC	chr4:2561498-2561754(+)$1	256	13	40	14.8902
CGUUGUUUUGUCUUGGUCUUUACAAUU	chr10:28883364-28883727(+)$1	363	229	256	15.1316
AGCUGUGGGCAUGGGUAGCUUUUGCGU	chr16:88996557-88996792(-)$1	235	117	144	13.5284
gagaaguuuguuauuaccaaccuucug	chr1:171524535-171524805(+)$1	270	28	55	14.7397
GUGUGAUUGGCCAUCCACCGUGUGUCA	chr19:10474123-10474407(-)$1	284	100	127	16.0094
ggcacagggaaaauaaguuugugguuu	chr19:40759390-40759655(-)$1	265	70	97	12.0928
UCCGUCAUGCUGUUUGUGCUAUUGGGG	chr1:230222493-230222746(+)$1	253	31	58	14.9161
uuuggggccacuugggcuggucuggag	chr7:107183935-107184172(-)$1	237	41	68	14.7385
UCAGUGUUUCUCCUGCUGAAGCGGAAU	chr7:141478455-141478709(+)$1	254	178	205	12.7563
gguggaucacgaggucaggaguucaag	chr16:47132926-47133181(-)$1	255	167	194	14.2913
GCGUGGAGUUUGACCCCUUCCUUAGUA	chr21:46285786-46286094(-)$1	308	71	98	11.9030
gaccuuggcaguggcuauggcagaggg	chr7:8108666-8108951(+)$1	285	130	157	14.0623
GGUUAAAUAUAACAAAAAUAUGUCCCC	chr6:15403861-15404104(+)$1	243	186	213	14.1929
auuagggggcaucccaagcccauaaug	chr4:151899268-151899518(-)$1	250	9	36	14.5878
UGAUCUCUGCUUUCCGUGUGGUGUGAA	chr17:55347154-55347432(+)$1	278	87	114	15.4269
CCAAGUUAUGAAAGUGCUGUAUACUUG	chr8:26152402-26152664(+)$1	262	233	260	14.8073
ugaucuaucuaauguugagaguggguu	chr10:21991177-21991458(+)$1	281	248	275	16.7590
UAAUACAGGAUCUUGCUUUCUGUUUCC	chr19:7515258-7515505(+)$1	247	157	184	14.3608
GGAUGAAGAGAGAAGGACUUAUCAUUU	chr1:27048149-27048418(+)$1	269	51	78	15.7088
CGGUGCAUCAAAAUAUAAUGGGCUGGU	chr1:113934757-113935010(+)$1	253	213	240	11.8033
UCCACAUCCCUCAAAAUGGGAUGUGGA	chrX:151141794-151142078(-)$1	284	216	243	14.0897
AUACGAGGGCUUCAGGUGCCAGUAUGG	chr10:82221353-82221668(+)$1	315	261	288	15.0893
AAUUUUAGUUAUAAGUUUGCCAUAGUU	chr16:89470425-89470654(-)$1	229	199	226	12.0077
AUUUGACGGCUUUGCUUGUAAAUUAAG	chr22:17083959-17084185(+)$1	226	39	66	15.2771
gcccaugacguugcgcuagucauguaa	chr22:50799708-50799951(+)$1	243	50	77	12.5800
UGUUCAGUGCUAGUUGUGUACUUUCAU	chr10:103602414-103602724(-)$1	310	120	147	14.7740
AGGGACGGGUUGGGCUUGCCUGUUGUG	chr22:50183676-50183976(-)$1	300	26	53	15.5601
UGGGGUGACUGGAUGAGAGAGUCACCA	chr1:228283802-228284052(+)$1	250	31	58	12.5734
AGGAAGUGGAUUUUUUUUUUUUUUCCU	chr2:15488599-15488891(-)$1	292	40	67	13.9057
CGUAGAUGUUGUAGACUGAGAUUUGGG	chr4:1950032-1950296(+)$1	264	8	35	14.7737
ugccucaguuucucugucuguggcgug	chr4:744088-744380(+)$1	292	235	262	12.0588
agugugcugccuaccuuguuguacugu	chr1:20218769-20218994(+)$1	225	73	100	14.5022
GCUUAGGGCUAGUCGUUUGUGCUAAGU	chrX:73071443-73071683(-)$1	240	52	79	12.6582
GCUCGCCAGUGUCCCAGGCUGCUGAGC	chr20:5986667-5986926(+)$1	259	160	187	14.7992

#DB
.((((.((((.......)))).)))))	chr19:8550423-8550681(+)$1	1	174	201	14.3061
((((((.(((.......))).))))))	chr3:182656586-182656891(-)$1	1	34	61	15.7088
(((((..(((.......)))..)))))	chr2:85766841-85767102(+)$1	1	210	237	15.5140
....((((((.......))))))))))	chr19:5605545-5605821(-)$1	1	143	170	15.0347
((((((((((.......))).))))))	chr9:138785714-138785960(-)$1	1	24	51	16.3888
.(((.(((((.......)))))..)))	chr10:21993985-21994210(+)$1	1	196	223	13.7731
.(((((((((.......))))))).))	chr22:23578972-23579255(+)$1	1	19	46	13.9131
.(((((..((.......)))))))..)	chr19:338439-338729(-)$1	1	40	67	14.6368
(((((.((((.......)))).)))))	chr6:150501773-150502061(+)$1	1	165	192	15.6426
((.(((((.........))).)))))(	chr4:32070018-32070363(+)$1	1	101	128	11.7800
((((.(((((.......))))).))))	chr2:148721161-148721455(-)$1	1	104	131	14.6518
((((((((((.......))))))))))	chr21:45444882-45445166(+)$1	1	36	63	16.3616
(((((((.((.......))...).)))	chr7:99070664-99070943(+)$1	1	168	195	15.7548
((((((.((.........)).))))))	chr16:89520247-89520496(-)$1	1	14	41	11.8618
((.(((((((.........))))))).	chr7:89996463-89996754(+)$1	1	236	263	12.3154
((((.(((.........))).)))).)	chr17:5472339-5472626(-)$1	1	212	239	11.9274
(.(.((((((.......)))))).).)	chr1:2164645-2164913(+)$1	1	116	143	14.8970
...(((((((.........))))))).	chr11:692889-693147(-)$1	1	11	38	11.9197
(.((((((((.......))))...)))	chr6:45273730-45273969(-)$1	1	89	116	14.7836
(((((((.((.......)).)))))..	chr19:803029-803282(+)$1	1	209	236	13.4720
(.(((.((((.........))))))))	chr22:20926384-20926630(+)$1	1	15	42	11.6461
((((((((((.......)).)))))))	chr1:27033192-27033443(+)$1	1	205	232	15.9881
(((((..((.........))...))))	chr7:6075004-6075252(-)$1	1	47	74	12.2331
((..((.(((.......)))))..)))	chrX:40583387-40583650(-)$1	1	41	68	14.3536
))))((((((.......))))))))))	chr1:169454356-169454600(-)$1	1	194	221	12.8065
(..(((((.(.......))))))..))	chr6:157258660-157258960(+)$1	1	186	213	15.1326
(..((.((((.......)))).))..)	chr4:32072390-32072639(+)$1	1	152	179	14.2089
((((((.(((.......))))))).))	chr19:59055764-59056038(+)$1	1	49	76	14.2043
.(((.(((((.......))))))))))	chr4:2561498-2561754(+)$1	1	13	40	14.8902
.(((((...(.......)...))))).	chr10:28883364-28883727(+)$1	1	229	256	15.1316
((....((((.......))))))))))	chr16:88996557-88996792(-)$1	1	117	144	13.5284
.(((((.(((.......))).)))))(	chr1:171524535-171524805(+)$1	1	28	55	14.7397
(.((((((((.......)))...))))	chr19:10474123-10474407(-)$1	1	100	127	16.0094
(.((((((.........)))))).)))	chr19:40759390-40759655(-)$1	1	70	97	12.0928
(((.(((.((.......))...)))))	chr1:230222493-230222746(+)$1	1	31	58	14.9161
(((.((((((.......)))))).)))	chr7:107183935-107184172(-)$1	1	41	68	14.7385
.))))(((((.......)))))(((..	chr7:141478455-141478709(+)$1	1	178	205	12.7563
(((((((..(.......)..))))...	chr16:47132926-47133181(-)$1	1	167	194	14.2913
((..((((.........))))...)))	chr21:46285786-46286094(-)$1	1	71	98	11.9030
(.(((((.((.......)).)).))).	chr7:8108666-8108951(+)$1	1	130	157	14.0623
((....((((.......))))..))))	chr6:15403861-15404104(+)$1	1	186	213	14.1929
((((..((((.......)))).)))).	chr4:151899268-151899518(-)$1	1	9	36	14.5878
(...(.((((.......)))).)....	chr17:55347154-55347432(+)$1	1	87	114	15.4269
((((((((((.......)))).)))))	chr8:26152402-26152664(+)$1	1	233	260	14.8073
((((((((((.......))).))))))	chr10:21991177-21991458(+)$1	1	248	275	16.7590
....((((((.......))))))...)	chr19:7515258-7515505(+)$1	1	157	184	14.3608
((((((.(((.......))).))))))	chr1:27048149-27048418(+)$1	1	51	78	15.7088
((((.(((.........))).))))..	chr1:113934757-113935010(+)$1	1	213	240	11.8033
((((((((((.......))))))))).	chrX:151141794-151142078(-)$1	1	216	243	14.0897
(..((..(((.......)))....)).	chr10:82221353-82221668(+)$1	1	261	288	15.0893
((((...((.........))...))))	chr16:89470425-89470654(-)$1	1	199	226	12.0077
.(((((..((.......))...)))))	chr22:17083959-17084185(+)$1	1	39	66	15.2771
(..((((((.........))))))...	chr22:50799708-50799951(+)$1	1	50	77	12.5800
((...(((((.......)))))..)))	chr10:103602414-103602724(-)$1	1	120	147	14.7740
.(.(((((((.......))))))).).	chr22:50183676-50183976(-)$1	1	26	53	15.5601
((.(((((((.........))))))).	chr1:228283802-228284052(+)$1	1	31	58	12.5734
((((((.(((.......))).))))))	chr2:15488599-15488891(-)$1	1	40	67	13.9057
(.(((((.((.......)).))))).)	chr4:1950032-1950296(+)$1	1	8	35	14.7737
((((.(((.........))).)))).)	chr4:744088-744380(+)$1	1	235	262	12.0588
(..((((.((.......)).))))..)	chr1:20218769-20218994(+)$1	1	73	100	14.5022
((((((.((.........)).))))))	chrX:73071443-73071683(-)$1	1	52	79	12.6582
(((((.((((.......)))).)))))	chr20:5986667-5986926(+)$1	1	160	187	14.7992

#PSSM
f : 0.17	c : 0.16	d : 0.14	= : 0.06	b : 0.06	e : 0.04	[ : 0.03	# : 0.03	i : 0.03	: : 0.03	! : 0.03	g : 0.03	" : 0.03	h : 0.03	) : 0.01	a : 0.01	] : 0.01	$ : 0.01	H : 0.01	
f : 0.16	d : 0.14	e : 0.11	[ : 0.11	c : 0.09	! : 0.08	i : 0.04	b : 0.04	= : 0.04	g : 0.03	" : 0.03	h : 0.03	# : 0.01	$ : 0.01	a : 0.01	
f : 0.16	d : 0.14	e : 0.14	! : 0.11	c : 0.08	[ : 0.06	# : 0.04	i : 0.04	= : 0.04	" : 0.04	g : 0.03	b : 0.01	a : 0.01	$ : 0.01	h : 0.01	
d : 0.16	f : 0.16	e : 0.16	g : 0.11	c : 0.06	# : 0.04	i : 0.04	b : 0.04	= : 0.04	[ : 0.04	! : 0.03	" : 0.03	$ : 0.01	h : 0.01	
f : 0.20	e : 0.14	d : 0.11	g : 0.11	[ : 0.09	b : 0.06	i : 0.04	= : 0.04	c : 0.04	# : 0.03	" : 0.03	! : 0.01	a : 0.01	h : 0.01	
e : 0.20	f : 0.17	g : 0.11	[ : 0.09	c : 0.08	d : 0.08	! : 0.06	= : 0.04	i : 0.03	b : 0.03	# : 0.03	" : 0.01	h : 0.01	
d : 0.22	e : 0.14	[ : 0.12	f : 0.11	! : 0.08	g : 0.08	c : 0.08	= : 0.04	i : 0.03	" : 0.03	a : 0.01	b : 0.01	
c : 0.24	d : 0.19	f : 0.11	e : 0.09	[ : 0.09	g : 0.08	b : 0.06	! : 0.04	= : 0.03	" : 0.01	i : 0.01	
b : 0.20	d : 0.17	c : 0.17	f : 0.09	r : 0.09	e : 0.08	g : 0.08	= : 0.01	[ : 0.01	" : 0.01	! : 0.01	i : 0.01	
d : 0.17	c : 0.17	r : 0.17	b : 0.14	f : 0.08	e : 0.08	g : 0.08	a : 0.04	= : 0.01	i : 0.01	
p : 0.75	r : 0.24	
p : 0.75	r : 0.24	
p : 0.75	r : 0.24	
p : 0.75	r : 0.24	
p : 0.75	r : 0.24	
p : 0.75	r : 0.24	
p : 0.75	r : 0.24	
c : 0.24	d : 0.17	b : 0.14	r : 0.14	f : 0.09	e : 0.08	a : 0.04	g : 0.03	= : 0.01	i : 0.01	
c : 0.24	b : 0.20	d : 0.17	f : 0.11	e : 0.09	r : 0.06	g : 0.03	= : 0.01	3 : 0.01	2 : 0.01	i : 0.01	
c : 0.24	d : 0.19	f : 0.11	e : 0.11	g : 0.08	] : 0.08	3 : 0.06	b : 0.06	= : 0.01	2 : 0.01	i : 0.01	
d : 0.24	] : 0.19	e : 0.14	f : 0.11	3 : 0.11	g : 0.08	= : 0.03	b : 0.03	2 : 0.01	i : 0.01	4 : 0.01	
e : 0.17	f : 0.16	3 : 0.12	] : 0.11	d : 0.11	g : 0.09	b : 0.04	= : 0.04	2 : 0.03	i : 0.03	h : 0.03	4 : 0.01	
f : 0.19	d : 0.14	e : 0.12	g : 0.09	3 : 0.08	2 : 0.06	i : 0.04	= : 0.04	c : 0.04	b : 0.03	] : 0.03	a : 0.03	h : 0.03	4 : 0.01	
d : 0.14	f : 0.14	e : 0.12	g : 0.11	c : 0.09	2 : 0.06	] : 0.06	i : 0.04	= : 0.04	3 : 0.04	h : 0.03	4 : 0.03	F : 0.01	b : 0.01	
f : 0.14	c : 0.14	d : 0.12	e : 0.12	g : 0.09	2 : 0.06	i : 0.04	] : 0.04	= : 0.04	3 : 0.04	h : 0.03	a : 0.01	F : 0.01	4 : 0.01	b : 0.01	
f : 0.14	c : 0.12	d : 0.09	g : 0.09	e : 0.09	2 : 0.06	] : 0.06	i : 0.04	b : 0.04	= : 0.04	3 : 0.04	h : 0.03	9 : 0.01	F : 0.01	n : 0.01	4 : 0.01	a : 0.01	
f : 0.17	d : 0.11	c : 0.09	e : 0.09	b : 0.08	] : 0.06	g : 0.04	= : 0.04	h : 0.04	3 : 0.04	2 : 0.04	i : 0.03	5 : 0.01	9 : 0.01	F : 0.01	n : 0.01	4 : 0.01	: : 0.01	

#score	876.5745788662016
#seq	62
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF324PNB_SSB_transcript_m2_run2.txt

#BEAR
[bb[dddd[cccmmmmccc]ddddbbddd	chr14:20811347-20811550(-)$1	203	169	198	12.2965
[bb[dddd[cccmmmmccc]ddddbbddd	chr14:20811335-20811537(-)$1	202	156	185	12.2965
ii[bbbb!!cccmmmmccc22bb]bb]ii	chr19:49610868-49611114(+)$1	246	204	233	10.8366
[bb[ccc[ddddmmmmdddd]ccc]bbcc	chr5:140105659-140105890(+)$1	231	118	147	10.1135
[bb[dddd[cccmmmmccc]ddddbbddd	chr14:20811337-20811539(-)$1	202	158	187	12.2965
iiiiiiii!!bbmmmmbb22iiiiiiiii	chr5:135416145-135416383(-)$1	238	14	43	12.1436
[ccc"""eeeeemmmmeeeee]ccc]ddd	chr11:46783885-46784101(-)$1	216	81	110	11.1807
!!eeeee!!ccclllccceeeee22ccc]	chr6:26988058-26988281(+)$1	223	6	35	9.5033
eeeea[ffffffmmmmffffff]a]eeee	chr9:35657833-35658037(-)$1	204	116	145	9.4375
=============lll=============	chr6:16267237-16267456(+)$1	219	32	61	11.4073
ccc!!ccc[cccmmmmccc]ccc>>>>>>	chr1:94313080-94313294(+)$1	214	110	139	11.7115
========[ccclllccc333========	chr11:75111333-75111543(+)$1	210	64	93	12.2032
=:============lll============	chr5:55593304-55593541(-)$1	237	188	217	9.3334
eeeee####cccmmmmccceeeeeeeeee	chr14:20811412-20811623(-)$1	211	67	96	11.8226
eee[ccc"""bbmmmmbbccc]eeeee44	chr2:133014425-133014672(-)$1	247	162	191	11.1888
hhhhhhhh[cccmmmmccc]hhhhhhhhb	chr7:139025427-139025631(+)$1	204	147	176	10.6459
c!!ffffffcccmmmmccc22ffffff22	chr1:31440942-31441177(-)$1	235	48	77	10.1872
dbbdddd!!cccmmmmccc22dddd]bb2	chr16:50100080-50100312(+)$1	232	112	141	11.1266
[ccc[gggggggmmmmgggggggccceee	chr9:35657801-35658017(-)$1	216	170	199	11.7981
iiiiii"""cccnnnnnccciiiiiiiii	chr16:88788074-88788316(-)$1	242	206	235	10.2464
c[ggggggg[bbmmmmbb333ggggggg]	chr9:137029517-137029729(-)$1	212	20	49	11.7755
a[cccccc[cccmmmmccc]ccc]ccc]a	chr1:94313023-94313280(+)$1	257	167	196	12.7998
[bb[dddd[cccmmmmccc]ddddbbeee	chr14:20811344-20811547(-)$1	203	166	195	12.3322
hhhhhhh"""bbmmmmbb333hhhhhhhh	chr8:67025537-67025807(+)$1	270	39	68	9.9447
$eeeee"""cccooooooccc333eeeee	chr16:71792225-71792452(-)$1	227	95	124	9.0370
=======[ddddllldddd22========	chr17:7480028-7480277(+)$1	249	156	185	9.6869
eeiiiiiiiiinnnnniiiiiiiii333e	chr11:75115363-75115570(+)$1	207	156	185	8.9063
a[dddd[eeeeemmmmeeeee]dddd]ad	chr6:27599141-27599364(+)$1	223	85	114	10.1744
dd==========lll==========4444	chr7:101503687-101503965(+)$1	278	61	90	10.6998
[ccc"""eeeeemmmmeeeee]ccc]ddd	chr11:46783901-46784105(-)$1	204	85	114	11.1807
eeeee[dddd[ammmma]dddd]eeeeec	chr1:28598877-28599121(+)$1	244	118	147	9.5405
ccbb$$$$$a[ammmma]a333bb]ccc]	chr1:3689251-3689503(+)$1	252	80	109	9.7960
eeee[ccc!!bbmmmmbbccceeeee]dd	chr19:10220821-10221029(+)$1	208	106	135	10.7282
fff[ccc[ddddmmmmddddcccffffff	chr5:180618625-180618831(-)$1	206	156	185	9.2374
dd!!ccc!!cccmmmmccccccdddd]bb	chr16:50100112-50100325(+)$1	213	180	209	11.7047
:===========mmmm===========::	chr13:41634763-41635004(-)$1	241	164	193	10.2847
ggggggg!!cccmmmmccc]ggggggg::	chr12:54797543-54797795(-)$1	252	169	198	11.7205
eeeea[ffffffmmmmffffff]a]eeee	chr9:35657871-35658107(-)$1	236	186	215	9.4375
dddd[gggggggmmmmggggggg22dddd	chr14:21865412-21865664(-)$1	252	139	168	10.3001
[ccc"""eeeeemmmmeeeee]ccc]ddd	chr11:46783862-46784068(-)$1	206	48	77	11.1807
!!ccc[bb[cccmmmmcccbb]ccc]ddd	chr19:10220829-10221054(+)$1	225	40	69	11.9855
[bb[dddd[cccmmmmccc]ddddbbeee	chr14:20811323-20811527(-)$1	204	146	175	12.3322
c[ggggggg[bbmmmmbb333ggggggg]	chr9:137029530-137029741(-)$1	211	32	61	11.7755
a[dddd[eeeeemmmmeeeee]dddd]ad	chr6:27599176-27599396(+)$1	220	50	79	10.1744
!!a[eeeeecccmmmmccc22eeeee]a5	chr16:88798893-88799115(-)$1	222	41	70	11.1879
gggggg"""cccmmmmccc]gggggggee	chr6:31499511-31499800(-)$1	289	128	157	13.5162
ccc!!ccc[cccmmmmccc]ccc>>>>>>	chr1:94313094-94313323(+)$1	229	96	125	11.7115
gggggggggggglllggggggg]gggggg	chr20:17943479-17943691(-)$1	212	161	190	9.3875
ee[dddd!!cccmmmmccc]dddd]eeee	chr17:75085367-75085574(+)$1	207	159	188	12.3993
c"""dddd[cccmmmmccc]dddd]ccc]	chr13:114018184-114018437(-)$1	253	159	188	12.3284
!!ccc[bb[cccmmmmcccbb]ccc]ddd	chr19:10220854-10221065(+)$1	211	15	44	11.9855
[ccc"""eeeeemmmmeeeee]ccc]ddd	chr11:46783907-46784132(-)$1	225	112	141	11.1807
[ccc"""eeeeemmmmeeeee]ccc]ddd	chr11:46783868-46784084(-)$1	216	64	93	11.1807
hhhhhhh"""bbmmmmbb333hhhhhhhh	chr8:67025493-67025737(+)$1	244	83	112	9.9447
eeeee####cccmmmmccceeeeeeeeee	chr14:20811427-20811645(-)$1	218	89	118	11.8226
:===========mmmm===========::	chr13:41634804-41635014(-)$1	210	174	203	10.2847
a[dddd[eeeeemmmmeeeee]dddd]ad	chr6:27599117-27599335(+)$1	218	109	138	10.1744
[bb[dddd[cccmmmmccc]ddddbbeee	chr14:20811327-20811534(-)$1	207	153	182	12.3322
[bb[dddd[cccmmmmccc]ddddbbddd	chr14:20811340-20811544(-)$1	204	163	192	12.2965
cggggggg!!bbmmmmbb]ggggggg22c	chr22:23547931-23548185(+)$1	254	23	52	11.0883
iiiiiii[cccnnnnnccc]iiiiiiiii	chr16:88798878-88799093(-)$1	215	174	203	10.1754

#otherMatches

#Seq PSSM
UGGACCCCGCCCUUCGGGGAGGGGCCCGG	chr14:20811347-20811550(-)$1	203	169	198	12.2965
UGGACCCCGCCCUUCGGGGAGGGGCCCGG	chr14:20811335-20811537(-)$1	202	156	185	12.2965
GCACAGGGACCGGGACCGGGACCGUGAGC	chr19:49610868-49611114(+)$1	246	204	233	10.8366
AUCAAACCACCUCUCUGGGUUGUUCGAGA	chr5:140105659-140105890(+)$1	231	118	147	10.1135
UGGACCCCGCCCUUCGGGGAGGGGCCCGG	chr14:20811337-20811539(-)$1	202	158	187	12.2965
GGGGCGGGGAGCACAUGCAGCCCGUCCCU	chr5:135416145-135416383(-)$1	238	14	43	12.1436
AGCCAUGGUAUCAGGUGAUACAGGCACCA	chr11:46783885-46784101(-)$1	216	81	110	11.1807
AAACACGCCGGAUGUUCCUGUGUAGGCUG	chr6:26988058-26988281(+)$1	223	6	35	9.5033
AGUGCCACGUGCAUACGCACGUAGACAUU	chr9:35657833-35658037(-)$1	204	116	145	9.4375
aaagguggcacgucggacgugccaccuuu	chr6:16267237-16267456(+)$1	219	32	61	11.4073
ggguucgagucccggcggagucgUAACGC	chr1:94313080-94313294(+)$1	214	110	139	11.7115
GCAGUUUCUUGUUUUGCAUGUGGAACUGU	chr11:75111333-75111543(+)$1	210	64	93	12.2032
gaguucauguccuuuguagggacauggau	chr5:55593304-55593541(-)$1	237	188	217	9.3334
AGCUCAUCAGUGGGGCCACGAGCUGAGUG	chr14:20811412-20811623(-)$1	211	67	96	11.8226
AGGUGCCCUUGCCCUCGCGGUCCCUGGCC	chr2:133014425-133014672(-)$1	247	162	191	11.1888
UACUUUUUUUUUUUUUAAAUGGGAAGUGU	chr7:139025427-139025631(+)$1	204	147	176	10.6459
GAAUGAGCAGUGCUUUCACCUUGCUUAGG	chr1:31440942-31441177(-)$1	235	48	77	10.1872
CUCCGUCGGGCCGGGAGGCGAGACGAGGU	chr16:50100080-50100312(+)$1	232	112	141	11.1266
GCGGCGUGGCGCGGGGGCGUCAUCCGUCA	chr9:35657801-35658017(-)$1	216	170	199	11.7981
UUCCAGUUUGGGUUCUUCCCCUGGAACAG	chr16:88788074-88788316(-)$1	242	206	235	10.2464
AAAGUGCGCAGGGAAGCCGAGGCGUGUUG	chr9:137029517-137029729(-)$1	212	20	49	11.7755
ggguucgagucccggcggagucgUAACGC	chr1:94313023-94313280(+)$1	257	167	196	12.7998
UGGACCCCGCCCUUCGGGGAGGGGCCCGG	chr14:20811344-20811547(-)$1	203	166	195	12.3322
GGGGACGCCGACACACGUACACGUCccuu	chr8:67025537-67025807(+)$1	270	39	68	9.9447
AUCGGCUAAGUGUCUUGUCACAAUGCUGA	chr16:71792225-71792452(-)$1	227	95	124	9.0370
GCCCUGGCAGUGUCCUACUUCCCAGGGCU	chr17:7480028-7480277(+)$1	249	156	185	9.6869
GUCAGUGCCAUGUUCUGUGGUGCUGUGCA	chr11:75115363-75115570(+)$1	207	156	185	8.9063
cgguacuuauacaacaguauaugugcggg	chr6:27599141-27599364(+)$1	223	85	114	10.1744
GUUUCUgcuguguggcauggcagaaugau	chr7:101503687-101503965(+)$1	278	61	90	10.6998
AGCCAUGGUAUCAGGUGAUACAGGCACCA	chr11:46783901-46784105(-)$1	204	85	114	11.1807
CGGGUGUCUGAGGGAGCACAGAGGCCUGG	chr1:28598877-28599121(+)$1	244	118	147	9.5405
CCCAGAGACGCGGGGACACAGGUGAGGCG	chr1:3689251-3689503(+)$1	252	80	109	9.7960
GCCCAGGGCAGGGGGACCCCCGGGCUCCA	chr19:10220821-10221029(+)$1	208	106	135	10.7282
UUCCUAUUCUUUCCUUAAAGAUAGAAAAG	chr5:180618625-180618831(-)$1	206	156	185	9.2374
GCCGAGGUCCGCGAGUGCGCCUGCGCAGG	chr16:50100112-50100325(+)$1	213	180	209	11.7047
CGGUUUGGAGGGCUGACUUUUUAAAUCUU	chr13:41634763-41635004(-)$1	241	164	193	10.2847
UUUCUUCUCUCUGAAAAGAUGAGGAAAGA	chr12:54797543-54797795(-)$1	252	169	198	11.7205
AGUGCCACGUGCAUACGCACGUAGACAUU	chr9:35657871-35658107(-)$1	236	186	215	9.4375
CCAGGUAGGGCAGUGUUGCCCUGGUUUGG	chr14:21865412-21865664(-)$1	252	139	168	10.3001
AGCCAUGGUAUCAGGUGAUACAGGCACCA	chr11:46783862-46784068(-)$1	206	48	77	11.1807
UCGCUGGCCGUGGCAACAUGCGGGCCCAG	chr19:10220829-10221054(+)$1	225	40	69	11.9855
UGGACCCCGCCCUUCGGGGAGGGGCCCGG	chr14:20811323-20811527(-)$1	204	146	175	12.3322
AAAGUGCGCAGGGAAGCCGAGGCGUGUUG	chr9:137029530-137029741(-)$1	211	32	61	11.7755
cgguacuuauacaacaguauaugugcggg	chr6:27599176-27599396(+)$1	220	50	79	10.1744
GUGGACCCUGCCAACUGGUUUGGGGUGCG	chr16:88798893-88799115(-)$1	222	41	70	11.1879
gcagugacuugcgauugcaccacugcacu	chr6:31499511-31499800(-)$1	289	128	157	13.5162
ggguucgagucccggcggagucgUAACGC	chr1:94313094-94313323(+)$1	229	96	125	11.7115
CCUCAGUUCCUGUUCUAGGAACUUGAGGC	chr20:17943479-17943691(-)$1	212	161	190	9.3875
GAGCAUUCUAGCAGCAGUUUGAUGAUCAU	chr17:75085367-75085574(+)$1	207	159	188	12.3993
gACCCCCCAGAGGAAACUUCGGGGACGCC	chr13:114018184-114018437(-)$1	253	159	188	12.3284
UCGCUGGCCGUGGCAACAUGCGGGCCCAG	chr19:10220854-10221065(+)$1	211	15	44	11.9855
AGCCAUGGUAUCAGGUGAUACAGGCACCA	chr11:46783907-46784132(-)$1	225	112	141	11.1807
AGCCAUGGUAUCAGGUGAUACAGGCACCA	chr11:46783868-46784084(-)$1	216	64	93	11.1807
GGGGACGCCGACACACGUACACGUCccuu	chr8:67025493-67025737(+)$1	244	83	112	9.9447
AGCUCAUCAGUGGGGCCACGAGCUGAGUG	chr14:20811427-20811645(-)$1	218	89	118	11.8226
CGGUUUGGAGGGCUGACUUUUUAAAUCUU	chr13:41634804-41635014(-)$1	210	174	203	10.2847
cgguacuuauacaacaguauaugugcggg	chr6:27599117-27599335(+)$1	218	109	138	10.1744
UGGACCCCGCCCUUCGGGGAGGGGCCCGG	chr14:20811327-20811534(-)$1	207	153	182	12.3322
UGGACCCCGCCCUUCGGGGAGGGGCCCGG	chr14:20811340-20811544(-)$1	204	163	192	12.2965
acuuacauaacCAUUUGGAAUGUGAGcau	chr22:23547931-23548185(+)$1	254	23	52	11.0883
CUGGUAUUCGAGGCCAUCGUGUACCGGCG	chr16:88798878-88799093(-)$1	215	174	203	10.1754

#DB
.((.((((.(((....))).)))))))))	chr14:20811347-20811550(-)$1	1	169	198	12.2965
.((.((((.(((....))).)))))))))	chr14:20811335-20811537(-)$1	1	156	185	12.2965
((.((((..(((....)))..)).)).))	chr19:49610868-49611114(+)$1	1	204	233	10.8366
.((.(((.((((....)))).))).))))	chr5:140105659-140105890(+)$1	1	118	147	10.1135
.((.((((.(((....))).)))))))))	chr14:20811337-20811539(-)$1	1	158	187	12.2965
((((((((..((....))..)))))))))	chr5:135416145-135416383(-)$1	1	14	43	12.1436
.(((...(((((....))))).))).)))	chr11:46783885-46784101(-)$1	1	81	110	11.1807
..(((((..(((...))))))))..))).	chr6:26988058-26988281(+)$1	1	6	35	9.5033
(((((.((((((....)))))).).))))	chr9:35657833-35658037(-)$1	1	116	145	9.4375
(((((((((((((...)))))))))))))	chr6:16267237-16267456(+)$1	1	32	61	11.4073
(((..(((.(((....))).)))......	chr1:94313080-94313294(+)$1	1	110	139	11.7115
((((((((.(((...)))...))))))))	chr11:75111333-75111543(+)$1	1	64	93	12.2032
).((((((((((((...))))))))))))	chr5:55593304-55593541(-)$1	1	188	217	9.3334
(((((....(((....))))))))(((((	chr14:20811412-20811623(-)$1	1	67	96	11.8226
(((.(((...((....))))).)))))..	chr2:133014425-133014672(-)$1	1	162	191	11.1888
((((((((.(((....))).)))))))))	chr7:139025427-139025631(+)$1	1	147	176	10.6459
(..(((((((((....)))..))))))..	chr1:31440942-31441177(-)$1	1	48	77	10.1872
(((((((..(((....)))..)))).)).	chr16:50100080-50100312(+)$1	1	112	141	11.1266
.(((.(((((((....)))))))))))))	chr9:35657801-35658017(-)$1	1	170	199	11.7981
((((((...(((.....))))))))))))	chr16:88788074-88788316(-)$1	1	206	235	10.2464
(.(((((((.((....))...))))))).	chr9:137029517-137029729(-)$1	1	20	49	11.7755
(.((((((.(((....))).))).))).)	chr1:94313023-94313280(+)$1	1	167	196	12.7998
.((.((((.(((....))).)))))))))	chr14:20811344-20811547(-)$1	1	166	195	12.3322
(((((((...((....))...))))))))	chr8:67025537-67025807(+)$1	1	39	68	9.9447
.(((((...(((......)))...)))))	chr16:71792225-71792452(-)$1	1	95	124	9.0370
(((((((.((((...))))..))))))))	chr17:7480028-7480277(+)$1	1	156	185	9.6869
(((((((((((.....)))))))))...)	chr11:75115363-75115570(+)$1	1	156	185	8.9063
(.((((.(((((....))))).)))).)(	chr6:27599141-27599364(+)$1	1	85	114	10.1744
((((((((((((...))))))))))....	chr7:101503687-101503965(+)$1	1	61	90	10.6998
.(((...(((((....))))).))).)))	chr11:46783901-46784105(-)$1	1	85	114	11.1807
(((((.((((.(....).)))).)))))(	chr1:28598877-28599121(+)$1	1	118	147	9.5405
((((.....(.(....).)...)).))).	chr1:3689251-3689503(+)$1	1	80	109	9.7960
((((.(((..((....)))))))))).))	chr19:10220821-10221029(+)$1	1	106	135	10.7282
(((.(((.((((....)))))))))))))	chr5:180618625-180618831(-)$1	1	156	185	9.2374
((..(((..(((....)))))))))).))	chr16:50100112-50100325(+)$1	1	180	209	11.7047
.(((((((((((....)))))))))))..	chr13:41634763-41635004(-)$1	1	164	193	10.2847
(((((((..(((....))).)))))))..	chr12:54797543-54797795(-)$1	1	169	198	11.7205
(((((.((((((....)))))).).))))	chr9:35657871-35658107(-)$1	1	186	215	9.4375
((((.(((((((....)))))))..))))	chr14:21865412-21865664(-)$1	1	139	168	10.3001
.(((...(((((....))))).))).)))	chr11:46783862-46784068(-)$1	1	48	77	11.1807
..(((.((.(((....))))).))).)))	chr19:10220829-10221054(+)$1	1	40	69	11.9855
.((.((((.(((....))).)))))))))	chr14:20811323-20811527(-)$1	1	146	175	12.3322
(.(((((((.((....))...))))))).	chr9:137029530-137029741(-)$1	1	32	61	11.7755
(.((((.(((((....))))).)))).)(	chr6:27599176-27599396(+)$1	1	50	79	10.1744
..(.((((((((....)))..))))).).	chr16:88798893-88799115(-)$1	1	41	70	11.1879
((((((...(((....))).)))))))))	chr6:31499511-31499800(-)$1	1	128	157	13.5162
(((..(((.(((....))).)))......	chr1:94313094-94313323(+)$1	1	96	125	11.7115
((((((((((((...))))))).))))))	chr20:17943479-17943691(-)$1	1	161	190	9.3875
((.((((..(((....))).)))).))))	chr17:75085367-75085574(+)$1	1	159	188	12.3993
(...((((.(((....))).)))).))).	chr13:114018184-114018437(-)$1	1	159	188	12.3284
..(((.((.(((....))))).))).)))	chr19:10220854-10221065(+)$1	1	15	44	11.9855
.(((...(((((....))))).))).)))	chr11:46783907-46784132(-)$1	1	112	141	11.1807
.(((...(((((....))))).))).)))	chr11:46783868-46784084(-)$1	1	64	93	11.1807
(((((((...((....))...))))))))	chr8:67025493-67025737(+)$1	1	83	112	9.9447
(((((....(((....))))))))(((((	chr14:20811427-20811645(-)$1	1	89	118	11.8226
.(((((((((((....)))))))))))..	chr13:41634804-41635014(-)$1	1	174	203	10.2847
(.((((.(((((....))))).)))).)(	chr6:27599117-27599335(+)$1	1	109	138	10.1744
.((.((((.(((....))).)))))))))	chr14:20811327-20811534(-)$1	1	153	182	12.3322
.((.((((.(((....))).)))))))))	chr14:20811340-20811544(-)$1	1	163	192	12.2965
((((((((..((....)).)))))))..)	chr22:23547931-23548185(+)$1	1	23	52	11.0883
(((((((.(((.....))).)))))))))	chr16:88798878-88799093(-)$1	1	174	203	10.1754

#PSSM
[ : 0.22	e : 0.14	c : 0.13	i : 0.06	! : 0.06	= : 0.06	d : 0.06	a : 0.06	h : 0.04	g : 0.04	: : 0.03	$ : 0.01	f : 0.01	
e : 0.16	b : 0.14	c : 0.14	[ : 0.09	! : 0.08	= : 0.08	i : 0.06	g : 0.06	h : 0.04	d : 0.04	: : 0.01	f : 0.01	" : 0.01	
c : 0.18	b : 0.16	e : 0.14	= : 0.11	g : 0.09	i : 0.06	d : 0.06	h : 0.04	[ : 0.03	! : 0.03	f : 0.01	a : 0.01	" : 0.01	
[ : 0.18	c : 0.14	e : 0.13	= : 0.11	d : 0.09	g : 0.09	i : 0.06	! : 0.04	h : 0.04	b : 0.03	f : 0.01	" : 0.01	
d : 0.21	c : 0.11	= : 0.11	e : 0.09	g : 0.09	" : 0.08	i : 0.06	h : 0.04	[ : 0.04	a : 0.03	! : 0.03	b : 0.01	f : 0.01	$ : 0.01	
d : 0.21	c : 0.13	g : 0.13	= : 0.11	" : 0.08	[ : 0.08	i : 0.06	e : 0.04	h : 0.04	# : 0.03	b : 0.01	f : 0.01	$ : 0.01	
d : 0.18	c : 0.13	" : 0.13	= : 0.11	g : 0.11	b : 0.04	i : 0.04	f : 0.04	h : 0.04	[ : 0.04	e : 0.03	# : 0.03	$ : 0.01	
d : 0.14	e : 0.14	! : 0.09	= : 0.09	" : 0.09	g : 0.09	[ : 0.06	c : 0.06	f : 0.04	i : 0.03	# : 0.03	b : 0.03	h : 0.01	$ : 0.01	
[ : 0.24	! : 0.14	e : 0.14	" : 0.09	= : 0.08	g : 0.08	d : 0.06	f : 0.04	# : 0.03	i : 0.01	$ : 0.01	c : 0.01	
c : 0.47	e : 0.13	= : 0.08	d : 0.06	! : 0.04	" : 0.04	g : 0.04	f : 0.03	[ : 0.03	i : 0.01	a : 0.01	
c : 0.47	b : 0.13	e : 0.13	= : 0.08	d : 0.04	g : 0.04	f : 0.03	[ : 0.03	i : 0.01	
c : 0.45	b : 0.13	e : 0.13	= : 0.08	d : 0.04	g : 0.04	f : 0.03	n : 0.03	a : 0.03	
m : 0.81	l : 0.08	n : 0.04	= : 0.03	o : 0.01	
m : 0.81	l : 0.09	n : 0.04	= : 0.01	o : 0.01	
m : 0.81	l : 0.11	n : 0.04	o : 0.01	
m : 0.81	n : 0.04	c : 0.03	l : 0.03	o : 0.01	d : 0.01	= : 0.01	g : 0.01	
c : 0.44	b : 0.13	e : 0.13	= : 0.06	d : 0.04	g : 0.04	f : 0.03	a : 0.03	l : 0.01	n : 0.01	o : 0.01	i : 0.01	
c : 0.45	b : 0.13	e : 0.13	= : 0.08	d : 0.04	g : 0.04	f : 0.03	] : 0.03	o : 0.01	i : 0.01	
c : 0.47	e : 0.14	= : 0.08	3 : 0.08	d : 0.06	g : 0.04	f : 0.03	2 : 0.01	i : 0.01	a : 0.01	] : 0.01	
] : 0.26	e : 0.18	2 : 0.09	3 : 0.09	= : 0.08	c : 0.08	g : 0.06	d : 0.04	f : 0.03	b : 0.03	i : 0.01	
e : 0.18	d : 0.16	c : 0.13	3 : 0.09	g : 0.09	2 : 0.08	= : 0.08	i : 0.06	f : 0.03	b : 0.03	] : 0.01	h : 0.01	
d : 0.18	] : 0.18	g : 0.13	= : 0.11	c : 0.09	e : 0.08	i : 0.06	f : 0.04	h : 0.04	3 : 0.03	b : 0.01	
d : 0.22	c : 0.19	= : 0.11	g : 0.11	e : 0.09	i : 0.06	] : 0.06	h : 0.04	b : 0.03	f : 0.01	3 : 0.01	
d : 0.22	c : 0.14	= : 0.11	e : 0.09	g : 0.09	i : 0.06	h : 0.04	] : 0.03	2 : 0.03	a : 0.03	> : 0.03	f : 0.03	3 : 0.01	b : 0.01	
c : 0.14	b : 0.13	= : 0.11	e : 0.11	] : 0.09	g : 0.09	d : 0.08	i : 0.06	h : 0.04	2 : 0.03	> : 0.03	f : 0.03	
e : 0.16	b : 0.14	] : 0.13	= : 0.09	g : 0.09	c : 0.08	d : 0.08	i : 0.04	h : 0.04	> : 0.03	f : 0.03	3 : 0.01	4 : 0.01	
d : 0.19	e : 0.19	] : 0.11	= : 0.09	g : 0.08	c : 0.06	i : 0.04	h : 0.04	b : 0.03	> : 0.03	f : 0.03	3 : 0.01	4 : 0.01	2 : 0.01	
d : 0.21	e : 0.19	i : 0.06	c : 0.06	= : 0.06	a : 0.06	h : 0.04	g : 0.04	: : 0.04	> : 0.03	4 : 0.03	2 : 0.03	b : 0.03	] : 0.01	3 : 0.01	f : 0.01	
d : 0.26	e : 0.19	] : 0.08	i : 0.06	= : 0.06	c : 0.04	: : 0.04	> : 0.03	4 : 0.03	b : 0.03	2 : 0.03	h : 0.03	a : 0.01	f : 0.01	5 : 0.01	g : 0.01	

#score	671.510166108656
#seq	61
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_CDS_m1_run2.txt

#BEAR
ccc[bb[ffffff[ccccccooooooccc22cccffffff	chr9:6645256-6645533(-)$1	277	79	119	16.8793
ea[eeeee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14233-14435(-)$1	202	59	99	22.2758
gg[============bb"""ccclllccc22bb]======	chr19:2431687-2431957(-)$1	270	192	232	15.3436
qccc]ccceeeee[ccccccooooooccc333ccceeeee	chr20:44526302-44526547(+)$1	245	189	229	17.3813
ee!!eeeee[bb!!dddd!!ccclllccc22dddd]bb]e	chr1:156639458-156639773(-)$1	315	82	122	13.9531
d"""dddd[ggggggg!!bboooooobb]ggggggg]ddd	chr17:38153990-38154272(+)$1	282	164	204	14.4943
ea[eeeee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14278-14480(-)$1	202	104	144	22.2758
!!dddd[ccc"""bbcccqqqqqqqqccc22bb]cccddd	chr3:49063655-49063929(-)$1	274	81	121	13.1492
g!!dddd[eeeee[ffffffooooooffffffeeeee333	chr12:57485316-57485608(+)$1	292	128	168	14.4574
ggggg:::dddd!!a!!cccooooooccc333a22ddddc	chr3:124515234-124515461(-)$1	227	22	62	16.7472
dd[eeeee[ffffff"""cccmmmmccc333ffffffeee	chr16:15149652-15149989(-)$1	337	87	127	13.4578
fffeeeee[eeeee!!ddddoooooodddd22eeeee]ee	chr12:105501413-105501746(+)$1	333	283	323	14.8543
:ccc[ccc!!ccc[cccoooooocccccc22ccc]cccdd	chr16:28962230-28962572(+)$1	342	250	290	14.4269
[ccc"""a[dddd[a[a[cccmmmmccc]a]a]ddddacc	chr19:56599535-56599786(-)$1	251	16	56	13.7685
dd[a[a[eeeee####cccooooooccceeeee]aa]ddd	chr22:37904542-37904781(-)$1	239	78	118	15.3207
ffffff[dddd!!bb!!cccnnnnnccc333bb22dddd]	chr17:47841219-47841509(-)$1	290	23	63	14.8044
b!!ccc!!a[ccc[dddd!!aooooooa22dddd]ccc]a	chr7:77166694-77166972(+)$1	278	115	155	15.0635
ogggggggccc!!gggggggccclllccc22ggggggg22	chr3:196304337-196304684(+)$1	347	278	318	13.3627
cc!!ccc!!dddd!!ddddoooooodddd22dddd]cccc	chr12:53421534-53421746(+)$1	212	91	131	16.7750
dd[dddd!!dddd[ddddoooooodddddddd333dddd]	chr1:889307-889563(-)$1	256	163	203	14.0348
ea[eeeee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14222-14433(-)$1	211	57	97	22.2758
!!ddddcccdddd[addddoooooodddd4444a]dddd]	chr19:40030341-40030636(-)$1	295	72	112	15.8873
ddd[cccdddd####a[cccooooooccca4444dddd]c	chr4:17585074-17585307(+)$1	233	54	94	18.3835
"""eeeee[ddddccc[cccooooooccc]ccc4444ddd	chr9:4740893-4741180(-)$1	287	93	133	18.6913
ff[dddd[a[cccbb!!cccooooooccc333bb]ccca]	chr14:24424226-24424522(+)$1	296	66	106	18.2928
hhh!!dddd!!eeeee!!cccnnnnnccc22eeeeedddd	chr2:97481936-97482238(+)$1	302	170	210	14.2143
ccc"""dddd[ccc[cccrrrrrrrrrcccccc]dddd]c	chr14:24108426-24108641(+)$1	215	46	86	12.9769
ddd!!ccc!!bb[ccc[cccmmmmcccccc]bb22cccdd	chr6:32157430-32157681(-)$1	251	43	83	13.2255
ccc[bb[ffffff[ccccccooooooccc22cccffffff	chr9:6645333-6645600(-)$1	267	146	186	16.8793
ee"""eeeeedddd[ccc[cccmmmmccc]ccc]dddd44	chr9:5832895-5833171(-)$1	276	157	197	14.1203
c[cccdddd"""dddd[aooooooa]dddd4444dddd33	chr17:1733200-1733513(+)$1	313	261	301	14.2286
ea[eeeee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14216-14422(-)$1	206	46	86	22.2758
ea[eeeee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14211-14416(-)$1	205	40	80	22.2758
ea[eeeee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14258-14462(-)$1	204	86	126	22.2758
ea[eeeee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14235-14438(-)$1	203	62	102	22.2758
eeedddd!!a[bb!!a[cccmmmmccc]a22bba22dddd	chr4:79369184-79369471(+)$1	287	86	126	14.4271
==[ccc"""bb[a[a!!a[aooooooa]a22a]a]bb333	chr14:24108414-24108626(+)$1	212	158	198	17.7055
$dddd!!dddd"""bb[cccmmmmcccbb22dddd333dd	chr19:3094434-3094762(+)$1	328	249	289	13.6171
iiiiiiii"""eeeee[cccooooooccc]eeeee]iiii	chr16:18573195-18573493(-)$1	298	96	136	16.3481
g!!dddd[eeeee[ffffffooooooffffffeeeee333	chr12:57485408-57485704(+)$1	296	36	76	14.4574
!!a[ggggggg[ccc####cccmmmmccc22cccgggggg	chr10:131565032-131565352(+)$1	320	40	80	14.2550
======!!cccxxxxxxxxxxxxxxxccc22=========	chr18:51750703-51750979(-)$1	276	80	120	13.2029
bb!!bb!!eeeee"""ccc[ccclllccc22ccc22eeee	chr20:61467729-61467959(+)$1	230	128	168	14.5276
iiii!!ggggggg[bb[cccooooooccc]bb]ggggggg	chr2:64109518-64109771(+)$1	253	137	177	17.2633
eeeee[bb!!ccc[bbddddoooooodddd]bb]ccc333	chr11:85779686-85780028(-)$1	342	15	55	15.7793
ea[eeeee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14284-14486(-)$1	202	110	150	22.2758
####eeeee[a!!eeeeeooooooeeeee22a22eeeee4	chr14:24108360-24108580(+)$1	220	89	129	14.0375

#otherMatches

#Seq PSSM
gucgggggcggccgccgccUGGCUGGGGGAUCGGGGCCGU	chr9:6645256-6645533(-)$1	277	79	119	16.8793
UAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14233-14435(-)$1	202	59	99	22.2758
UUGGGGGGUGCUCGGCUGGAGUCCUGGGCAGGGUCUGGGC	chr19:2431687-2431957(-)$1	270	192	232	15.3436
UUGGGAGCGGGUAUGCCUGGGAGUGGCCAGCUGGCUGCCU	chr20:44526302-44526547(+)$1	245	189	229	17.3813
gggagCCAGGGGCUGGGCGGUGGGGGCCAGGGUCUUCUGU	chr1:156639458-156639773(-)$1	315	82	122	13.9531
UGUAUGUUUUUUGAAGCUUCGAUUAUGAUUUUUAAACAAU	chr17:38153990-38154272(+)$1	282	164	204	14.4943
UAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14278-14480(-)$1	202	104	144	22.2758
CACUGCUGCCCAGGCCAAGAACCUCAUUGAUGCAGGUGUG	chr3:49063655-49063929(-)$1	274	81	121	13.1492
CUUCUCCCCCCCUGCAGGGGGAGGAGUCCCUGAGGGGACU	chr12:57485316-57485608(+)$1	292	128	168	14.4574
AGGUGCGAGUGCCAGGAUGGGGAGAACCAGAGCGUGUACC	chr3:124515234-124515461(-)$1	227	22	62	16.7472
ggcggcgggcggcccggggcUGCAAAGCGGGGGGCCGCCG	chr16:15149652-15149989(-)$1	337	87	127	13.4578
CUGGGCUGGGCAGCGCUCCUGCGAGAGGGACGGCUGCGCA	chr12:105501413-105501746(+)$1	333	283	323	14.8543
UGGUCACCGACAGCGAUGAGGAAAUUCUGGAGGUCGCCAC	chr16:28962230-28962572(+)$1	342	250	290	14.4269
agccauggcgggcgcgggggcaaaggccgcggggccccgg	chr19:56599535-56599786(-)$1	251	16	56	13.7685
CCUGUGAUCCCCAGGAGGCGAGCCGGCCGGGGGCCCCGGG	chr22:37904542-37904781(-)$1	239	78	118	15.3207
UCUCGCAGUGGGGCUGAGGCAGGCAGCCGGGAGAGCCAUg	chr17:47841219-47841509(-)$1	290	23	63	14.8044
cgggcgggcgggcggcgggggggccAGCGACCGCAGCCGG	chr7:77166694-77166972(+)$1	278	115	155	15.0635
AUCUACUACAUAAUGGAGAAGUCAAUGGCAGUUUUCCACA	chr3:196304337-196304684(+)$1	347	278	318	13.3627
auggCCCACGCCGGGAUAUGGAUCGAUAUGGUGGCCGGGA	chr12:53421534-53421746(+)$1	212	91	131	16.7750
UGGGCUCGGCCAUACAGGUGCUAUUCUGGUGGGGAGGGCA	chr1:889307-889563(-)$1	256	163	203	14.0348
UAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14222-14433(-)$1	211	57	97	22.2758
aggcccggugccggcggccagggaaggucggauggcggcg	chr19:40030341-40030636(-)$1	295	72	112	15.8873
CUGGAGCUCUCGUCUGUGGAGGUGGAUCCCUGUGGAGACG	chr4:17585074-17585307(+)$1	233	54	94	18.3835
AUGGGGGCGUCCGCGCGGCUGCUGCGAGCGGUGAUCAUGG	chr9:4740893-4741180(-)$1	287	93	133	18.6913
GUCGUCAGCAGCCGGAAGCAGCAGAAUGUGGACCAGGCGG	chr14:24424226-24424522(+)$1	296	66	106	18.2928
gcgAGUGCUGGGCUUCUGCCUGGAGGAGGAUGGAGCGGCG	chr2:97481936-97482238(+)$1	302	170	210	14.2143
GCCAUGGCCAAGCUGCAGGGGGAGGGGCUGAGUGUGGCGG	chr14:24108426-24108641(+)$1	215	46	86	12.9769
GGAUUGGUGAGUGGGGAGCCUGGGGGCCCUGGCGAGCCUC	chr6:32157430-32157681(-)$1	251	43	83	13.2255
gucgggggcggccgccgccUGGCUGGGGGAUCGGGGCCGU	chr9:6645333-6645600(-)$1	267	146	186	16.8793
CUGAGUCGGCUGCUGUGAGGCGGCACCGCGUCGGAGUAGA	chr9:5832895-5833171(-)$1	276	157	197	14.1203
UGCGGCCCCGAGCCUCGCGGAGUAGAGAGGGGGAGGGGAG	chr17:1733200-1733513(+)$1	313	261	301	14.2286
UAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14216-14422(-)$1	206	46	86	22.2758
UAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14211-14416(-)$1	205	40	80	22.2758
UAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14258-14462(-)$1	204	86	126	22.2758
UAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14235-14438(-)$1	203	62	102	22.2758
CUCAACCUUCACCUACCAGGAUAUCCUAGCUGGGCUGGUU	chr4:79369184-79369471(+)$1	287	86	126	14.4271
GGCAGGCGGUGGAAGGACACAGAGAGGGGAACAUGCAGAA	chr14:24108414-24108626(+)$1	212	158	198	17.7055
GCGAUGAGGUGAAGGAGUCCAAGCGGAUCAACGCCGAGAU	chr19:3094434-3094762(+)$1	328	249	289	13.6171
UGCCGGCGGUGGGUCUAGCUGGGGGAGGUCGGGCCAUGCU	chr16:18573195-18573493(-)$1	298	96	136	16.3481
CUUCUCCCCCCCUGCAGGGGGAGGAGUCCCUGAGGGGACU	chr12:57485408-57485704(+)$1	296	36	76	14.4574
CACAGAGUGGUCUGCAGCAGCGGAGCCGUGGGCAACUACU	chr10:131565032-131565352(+)$1	320	40	80	14.2550
UGCCCGGAGCAGGAGGAGGGGGAGAGUGCGGCGGGCGGCA	chr18:51750703-51750979(-)$1	276	80	120	13.2029
GGGAGCUGUGUGGGGGGAUGAUCAGCGGUAAGUCAGCCAC	chr20:61467729-61467959(+)$1	230	128	168	14.5276
GUUGAACAAACUAGUGGUGGUGAAACUCAAUGGUGGUUUG	chr2:64109518-64109771(+)$1	253	137	177	17.2633
CCGCGGGUGACACGAGCCGGUUCUCUCUGGACUGGUGGCA	chr11:85779686-85780028(-)$1	342	15	55	15.7793
UAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14284-14486(-)$1	202	110	150	22.2758
GGAAGCAGCAGAACGUGGACCGGGCCAUGGCCAAGCUGCA	chr14:24108360-24108580(+)$1	220	89	129	14.0375

#DB
(((.((.((((((.((((((......)))..)))))))))	chr9:6645256-6645533(-)$1	1	79	119	16.8793
((.(((((.((((.((.(((......)))..)).)))).)	chrM:14233-14435(-)$1	1	59	99	22.2758
((.((((((((((((((...(((...)))..)).))))))	chr19:2431687-2431957(-)$1	1	192	232	15.3436
.))).)))(((((.((((((......)))...))))))))	chr20:44526302-44526547(+)$1	1	189	229	17.3813
((..(((((.((..((((..(((...)))..)))).)).)	chr1:156639458-156639773(-)$1	1	82	122	13.9531
(...((((.(((((((..((......)).))))))).)))	chr17:38153990-38154272(+)$1	1	164	204	14.4943
((.(((((.((((.((.(((......)))..)).)))).)	chrM:14278-14480(-)$1	1	104	144	22.2758
..((((.(((...(((((........)))..)).))))))	chr3:49063655-49063929(-)$1	1	81	121	13.1492
(..((((.(((((.((((((......)))))))))))...	chr12:57485316-57485608(+)$1	1	128	168	14.4574
)))))...((((..(..(((......)))...)..))))(	chr3:124515234-124515461(-)$1	1	22	62	16.7472
((.(((((.((((((...(((....)))...)))))))))	chr16:15149652-15149989(-)$1	1	87	127	13.4578
)))(((((.(((((..((((......))))..))))).))	chr12:105501413-105501746(+)$1	1	283	323	14.8543
.(((.(((..(((.(((......))))))..))).)))((	chr16:28962230-28962572(+)$1	1	250	290	14.4269
.(((...(.((((.(.(.(((....))).).).)))))))	chr19:56599535-56599786(-)$1	1	16	56	13.7685
((.(.(.(((((....(((......)))))))).)).)))	chr22:37904542-37904781(-)$1	1	78	118	15.3207
((((((.((((..((..(((.....)))...))..)))).	chr17:47841219-47841509(-)$1	1	23	63	14.8044
(..(((..(.(((.((((..(......)..)))).))).)	chr7:77166694-77166972(+)$1	1	115	155	15.0635
.)))))))(((..((((((((((...)))..)))))))..	chr3:196304337-196304684(+)$1	1	278	318	13.3627
((..(((..((((..((((......))))..)))).))))	chr12:53421534-53421746(+)$1	1	91	131	16.7750
((.((((..((((.((((......))))))))...)))).	chr1:889307-889563(-)$1	1	163	203	14.0348
((.(((((.((((.((.(((......)))..)).)))).)	chrM:14222-14433(-)$1	1	57	97	22.2758
..(((((((((((.(((((......))))....).)))).	chr19:40030341-40030636(-)$1	1	72	112	15.8873
(((.(((((((....(.(((......))))....)))).)	chr4:17585074-17585307(+)$1	1	54	94	18.3835
...(((((.(((((((.(((......))).)))....)))	chr9:4740893-4741180(-)$1	1	93	133	18.6913
((.((((.(.(((((..(((......)))...)).)))).	chr14:24424226-24424522(+)$1	1	66	106	18.2928
(((..((((..(((((..(((.....)))..)))))))))	chr2:97481936-97482238(+)$1	1	170	210	14.2143
(((...((((.(((.(((.........)))))).)))).)	chr14:24108426-24108641(+)$1	1	46	86	12.9769
(((..(((..((.(((.(((....)))))).))..)))))	chr6:32157430-32157681(-)$1	1	43	83	13.2255
(((.((.((((((.((((((......)))..)))))))))	chr9:6645333-6645600(-)$1	1	146	186	16.8793
((...(((((((((.(((.(((....))).))).))))..	chr9:5832895-5833171(-)$1	1	157	197	14.1203
(.(((((((...((((.(......).))))....))))..	chr17:1733200-1733513(+)$1	1	261	301	14.2286
((.(((((.((((.((.(((......)))..)).)))).)	chrM:14216-14422(-)$1	1	46	86	22.2758
((.(((((.((((.((.(((......)))..)).)))).)	chrM:14211-14416(-)$1	1	40	80	22.2758
((.(((((.((((.((.(((......)))..)).)))).)	chrM:14258-14462(-)$1	1	86	126	22.2758
((.(((((.((((.((.(((......)))..)).)))).)	chrM:14235-14438(-)$1	1	62	102	22.2758
)))((((..(.((..(.(((....))).)..)))..))))	chr4:79369184-79369471(+)$1	1	86	126	14.4271
((.(((...((.(.(..(.(......).)..).).))...	chr14:24108414-24108626(+)$1	1	158	198	17.7055
.((((..((((...((.(((....)))))..))))...))	chr19:3094434-3094762(+)$1	1	249	289	13.6171
((((((((...(((((.(((......))).))))).))))	chr16:18573195-18573493(-)$1	1	96	136	16.3481
(..((((.(((((.((((((......)))))))))))...	chr12:57485408-57485704(+)$1	1	36	76	14.4574
..(.(((((((.(((....(((....)))..)))))))))	chr10:131565032-131565352(+)$1	1	40	80	14.2550
((((((..(((...............)))..)))))))))	chr18:51750703-51750979(-)$1	1	80	120	13.2029
((..((..(((((...(((.(((...)))..)))..))))	chr20:61467729-61467959(+)$1	1	128	168	14.5276
((((..(((((((.((.(((......))).)).)))))))	chr2:64109518-64109771(+)$1	1	137	177	17.2633
(((((.((..(((.((((((......)))).)).)))...	chr11:85779686-85780028(-)$1	1	15	55	15.7793
((.(((((.((((.((.(((......)))..)).)))).)	chrM:14284-14486(-)$1	1	110	150	22.2758
....(((((.(..(((((......)))))..)..))))).	chr14:24108360-24108580(+)$1	1	89	129	14.0375

#PSSM
e : 0.25	d : 0.12	c : 0.10	g : 0.08	! : 0.06	f : 0.06	b : 0.04	= : 0.04	i : 0.04	q : 0.02	: : 0.02	[ : 0.02	o : 0.02	" : 0.02	h : 0.02	$ : 0.02	# : 0.02	
a : 0.17	c : 0.14	! : 0.12	d : 0.12	e : 0.08	g : 0.06	f : 0.06	" : 0.04	= : 0.04	i : 0.04	h : 0.02	[ : 0.02	b : 0.02	# : 0.02	
[ : 0.29	c : 0.14	! : 0.12	d : 0.10	" : 0.06	g : 0.04	f : 0.04	e : 0.04	i : 0.04	h : 0.02	a : 0.02	= : 0.02	# : 0.02	
e : 0.25	d : 0.17	c : 0.12	! : 0.10	[ : 0.08	" : 0.06	= : 0.04	g : 0.04	i : 0.04	a : 0.02	f : 0.02	# : 0.02	
e : 0.29	d : 0.19	c : 0.10	b : 0.06	g : 0.06	" : 0.06	! : 0.06	= : 0.04	[ : 0.04	] : 0.02	f : 0.02	i : 0.02	
e : 0.29	d : 0.21	c : 0.14	b : 0.06	= : 0.04	" : 0.04	g : 0.04	! : 0.04	: : 0.02	a : 0.02	f : 0.02	i : 0.02	[ : 0.02	
e : 0.29	d : 0.19	c : 0.12	[ : 0.10	! : 0.08	g : 0.06	" : 0.04	= : 0.02	: : 0.02	i : 0.02	b : 0.02	
e : 0.31	d : 0.14	! : 0.12	c : 0.10	[ : 0.06	g : 0.06	f : 0.04	= : 0.02	: : 0.02	a : 0.02	" : 0.02	i : 0.02	b : 0.02	
[ : 0.27	e : 0.17	d : 0.14	! : 0.12	c : 0.08	f : 0.04	a : 0.04	" : 0.04	g : 0.04	= : 0.02	
d : 0.38	e : 0.14	[ : 0.08	! : 0.08	f : 0.06	g : 0.06	c : 0.06	" : 0.04	= : 0.02	a : 0.02	b : 0.02	
d : 0.38	e : 0.12	c : 0.12	f : 0.06	b : 0.06	g : 0.06	" : 0.06	[ : 0.04	= : 0.02	! : 0.02	a : 0.02	
d : 0.31	e : 0.17	c : 0.10	f : 0.06	b : 0.06	" : 0.06	! : 0.06	g : 0.04	[ : 0.04	= : 0.02	# : 0.02	x : 0.02	
d : 0.31	e : 0.14	c : 0.12	! : 0.10	f : 0.06	g : 0.04	" : 0.04	# : 0.04	= : 0.02	[ : 0.02	b : 0.02	a : 0.02	x : 0.02	
[ : 0.44	! : 0.08	e : 0.08	c : 0.08	b : 0.06	g : 0.04	# : 0.04	d : 0.04	" : 0.04	= : 0.02	f : 0.02	x : 0.02	
b : 0.29	c : 0.14	d : 0.08	a : 0.08	f : 0.06	! : 0.06	e : 0.06	g : 0.04	# : 0.04	[ : 0.04	= : 0.02	x : 0.02	" : 0.02	
b : 0.25	c : 0.19	d : 0.12	! : 0.10	e : 0.06	g : 0.04	f : 0.04	" : 0.04	# : 0.04	a : 0.04	[ : 0.02	x : 0.02	
[ : 0.34	c : 0.19	d : 0.14	! : 0.12	f : 0.04	b : 0.02	" : 0.02	a : 0.02	g : 0.02	# : 0.02	x : 0.02	e : 0.02	
c : 0.55	d : 0.14	" : 0.04	! : 0.04	f : 0.04	a : 0.04	o : 0.02	[ : 0.02	g : 0.02	# : 0.02	x : 0.02	e : 0.02	
c : 0.55	d : 0.08	o : 0.08	! : 0.04	f : 0.04	[ : 0.04	" : 0.02	b : 0.02	q : 0.02	g : 0.02	r : 0.02	# : 0.02	x : 0.02	
c : 0.55	o : 0.14	! : 0.04	f : 0.04	d : 0.04	" : 0.02	b : 0.02	q : 0.02	g : 0.02	r : 0.02	a : 0.02	x : 0.02	[ : 0.02	
o : 0.63	c : 0.19	m : 0.06	q : 0.02	n : 0.02	a : 0.02	r : 0.02	x : 0.02	
o : 0.65	c : 0.12	m : 0.10	n : 0.04	q : 0.02	r : 0.02	x : 0.02	
o : 0.65	m : 0.14	c : 0.08	n : 0.04	q : 0.02	r : 0.02	x : 0.02	
o : 0.63	m : 0.14	l : 0.08	n : 0.04	q : 0.02	c : 0.02	r : 0.02	x : 0.02	
o : 0.57	l : 0.08	m : 0.08	c : 0.08	n : 0.04	q : 0.02	d : 0.02	r : 0.02	a : 0.02	x : 0.02	e : 0.02	
o : 0.51	c : 0.17	l : 0.08	d : 0.06	m : 0.04	q : 0.02	n : 0.02	r : 0.02	] : 0.02	x : 0.02	e : 0.02	
c : 0.72	d : 0.12	f : 0.04	b : 0.02	o : 0.02	r : 0.02	a : 0.02	e : 0.02	
c : 0.70	d : 0.12	b : 0.04	f : 0.04	] : 0.04	a : 0.02	e : 0.02	
c : 0.61	d : 0.12	] : 0.04	f : 0.04	3 : 0.04	e : 0.04	a : 0.04	2 : 0.02	b : 0.02	
2 : 0.53	3 : 0.10	d : 0.08	] : 0.08	f : 0.04	a : 0.04	c : 0.04	g : 0.02	e : 0.02	4 : 0.02	
2 : 0.53	3 : 0.10	] : 0.06	4 : 0.06	c : 0.06	f : 0.04	e : 0.04	d : 0.04	g : 0.02	b : 0.02	
b : 0.31	c : 0.17	d : 0.10	3 : 0.06	f : 0.06	a : 0.06	e : 0.06	4 : 0.06	g : 0.04	2 : 0.02	= : 0.02	
b : 0.31	c : 0.19	e : 0.12	d : 0.08	] : 0.06	4 : 0.06	g : 0.04	a : 0.02	f : 0.02	3 : 0.02	= : 0.02	2 : 0.02	
] : 0.29	c : 0.12	d : 0.10	e : 0.10	2 : 0.08	g : 0.06	a : 0.06	4 : 0.06	f : 0.02	3 : 0.02	b : 0.02	= : 0.02	
d : 0.34	e : 0.12	2 : 0.10	] : 0.10	g : 0.08	f : 0.06	c : 0.06	= : 0.04	a : 0.02	3 : 0.02	4 : 0.02	
d : 0.36	e : 0.12	c : 0.12	g : 0.08	f : 0.06	] : 0.06	= : 0.04	2 : 0.04	a : 0.02	4 : 0.02	b : 0.02	3 : 0.02	
d : 0.40	c : 0.14	e : 0.12	f : 0.06	g : 0.06	= : 0.04	b : 0.04	] : 0.04	4 : 0.02	3 : 0.02	i : 0.02	
d : 0.46	3 : 0.10	c : 0.10	e : 0.08	g : 0.06	f : 0.04	= : 0.04	b : 0.02	] : 0.02	a : 0.02	i : 0.02	
d : 0.27	] : 0.25	e : 0.10	3 : 0.10	f : 0.04	= : 0.04	c : 0.04	g : 0.04	2 : 0.02	a : 0.02	4 : 0.02	i : 0.02	
e : 0.27	d : 0.19	3 : 0.10	c : 0.10	] : 0.08	f : 0.04	= : 0.04	4 : 0.04	g : 0.04	a : 0.02	2 : 0.02	i : 0.02	

#score	769.0038394630999
#seq	47
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_CDS_m1_run2.txt

#BEAR
%eeeeevvvvvvvvvvvvveeeee	chr12:57538989-57539256(+)$1	267	51	75	23.1331
ffff[ccctttttttttttcccff	chr11:2154202-2154404(-)$1	202	92	116	23.2265
b[eeeeettttttttttteeeee]	chr19:39924061-39924263(-)$1	202	64	88	22.2892
iieeeeeuuuuuuuuuuuueeeee	chr8:99057129-99057350(-)$1	221	136	160	22.9242
ee[bbavvvvvvvvvvvvva]bb]	chr20:3578465-3578722(+)$1	257	27	51	22.4645
####ddddtttttttttttddddd	chr16:56436826-56437094(-)$1	268	17	41	21.1110
[eeeeeuuuuuuuuuuuueeeee]	chrX:153063732-153064010(+)$1	278	3	27	23.0548
gggggggtttttttttttgggggg	chr19:46190670-46190955(-)$1	285	208	232	21.9154
dddd[ccctttttttttttccc]d	chr2:96943876-96944135(-)$1	259	14	38	22.4245
ffff[ccctttttttttttcccff	chr11:2154248-2154459(-)$1	211	147	171	23.2265
ggg[bbuuuuuuuuuuuubb]ggg	chr4:79436880-79437164(+)$1	284	180	204	21.8347
[cccyyyyyyyyyyyyyyyyccc]	chr12:9241707-9241911(-)$1	204	79	103	21.1013
da[cccuuuuuuuuuuuuccc]a]	chr3:53260766-53260990(-)$1	224	81	105	22.9024
eeeeeevvvvvvvvvvvvveeeee	chr16:19514691-19514983(-)$1	292	181	205	23.5515
!!ddddwwwwwwwwwwwwwwdddd	chr2:21234591-21234795(-)$1	204	95	119	21.7019
$$$cccvvvvvvvvvvvvvccc44	chr19:10930555-10930862(+)$1	307	251	275	23.1639
ffff[ccctttttttttttcccff	chr11:2154241-2154448(-)$1	207	136	160	23.2265
#eeeeettttttttttteeeee44	chr7:127569160-127569427(+)$1	267	31	55	21.1741
ggg[cccuuuuuuuuuuuuccc]g	chr18:29116067-29116352(+)$1	285	23	47	23.5489
b[eeeeettttttttttteeeee]	chr19:39924063-39924265(-)$1	202	66	90	22.2892
eeee[bbtttttttttttbbeeee	chr22:42294646-42294882(+)$1	236	138	162	21.8817
da[cccuuuuuuuuuuuuccc]a]	chr3:53260738-53260966(-)$1	228	57	81	22.9024
ffffffvvvvvvvvvvvvvfffff	chr3:53262990-53263213(-)$1	223	20	44	23.4062
ccc!!auuuuuuuuuuuua22ccc	chr1:161192063-161192269(-)$1	206	144	168	22.3954
gggggggtttttttttttgggggg	chr12:120635155-120635365(-)$1	210	18	42	21.9154
""ddddwwwwwwwwwwwwwwdddd	chr6:33243541-33243760(+)$1	219	62	86	21.5913
eeee[awwwwwwwwwwwwwwa]ee	chr6:31616590-31616822(-)$1	232	5	29	22.1485
ffff[ccctttttttttttcccff	chr11:2154211-2154414(-)$1	203	102	126	23.2265
eeeeeeeettttttttttteeeee	chr1:220307643-220307889(+)$1	246	25	49	21.9293
ddddddwwwwwwwwwwwwwwdddd	chr1:228336363-228336660(+)$1	297	219	243	21.1550
fffffftttttttttttffffff]	chr20:60963283-60963514(+)$1	231	61	85	21.0032
ffff[ccctttttttttttcccff	chr11:2154188-2154400(-)$1	212	88	112	23.2265
[bbccctttttttttttccc]bb]	chr4:187541634-187541907(-)$1	273	92	116	20.6650
ffffffvvvvvvvvvvvvvfffff	chr9:130212909-130213114(-)$1	205	123	147	23.4062
ffff[ccctttttttttttcccff	chr11:2154222-2154425(-)$1	203	113	137	23.2265
[a[cccvvvvvvvvvvvvvccc]a	chr2:21242656-21242864(-)$1	208	30	54	23.9982
"bbyyyyyyyyyyyyyyyybb333	chr18:43664369-43664618(-)$1	249	44	68	19.4845
ffff[ccctttttttttttcccff	chr11:2154165-2154380(-)$1	215	68	92	23.2265
""ddddwwwwwwwwwwwwwwdddd	chr6:33243475-33243685(+)$1	210	128	152	21.5913
:cccbbvvvvvvvvvvvvvbb]cc	chr20:34800109-34800387(+)$1	278	118	142	21.4960
cc"""ccctttttttttttccc44	chr2:85823915-85824148(+)$1	233	139	163	22.3945
c[ddddvvvvvvvvvvvvvdddd2	chr13:99992553-99992856(+)$1	303	127	151	22.9057
ffff[ccctttttttttttcccff	chr11:2154204-2154411(-)$1	207	99	123	23.2265
eeeeewwwwwwwwwwwwwweeeee	chr6:133135811-133136015(+)$1	204	41	65	21.9413
""ddddwwwwwwwwwwwwwwdddd	chr6:33243518-33243724(+)$1	206	85	109	21.5913
hhhcccuuuuuuuuuuuucccccc	chr2:228678506-228678738(+)$1	232	107	131	22.3729
ffff[ccctttttttttttcccff	chr11:2154144-2154352(-)$1	208	40	64	23.2265
!!ddddwwwwwwwwwwwwwwdddd	chr2:21234595-21234817(-)$1	222	117	141	21.7019
[eeeeeuuuuuuuuuuuueeeee]	chr7:98565057-98565367(+)$1	310	118	142	23.0548
:fffffftttttttttttffffff	chr4:109543038-109543254(+)$1	216	145	169	21.1267
::dddduuuuuuuuuuuuddddff	chr16:30455875-30456128(-)$1	253	16	40	20.3711
hhhhhwwwwwwwwwwwwwwhhhhh	chr17:26947460-26947688(-)$1	228	74	98	19.8593
:eeeeevvvvvvvvvvvvveeeee	chr10:7769565-7769768(+)$1	203	65	89	22.7552
ffffffvvvvvvvvvvvvvfffff	chr10:125805255-125805507(-)$1	252	57	81	23.4062
dfffffftttttttttttffffff	chr1:153963941-153964144(+)$1	203	168	192	21.8325
bbbbyyyyyyyyyyyyyyyybb]b	chr19:58905859-58906063(+)$1	204	36	60	18.8666
+eeeeeuuuuuuuuuuuueeeeei	chrX:118603668-118603891(+)$1	223	117	141	22.2095
ffff[ccctttttttttttcccff	chr11:2154225-2154431(-)$1	206	119	143	23.2265
eeeeeccctttttttttttccc]e	chr16:72984382-72984670(-)$1	288	88	112	22.8821

#otherMatches

#Seq PSSM
AGCCAACUCCCAGAACAUCUUGGC	chr12:57538989-57539256(+)$1	267	51	75	23.1331
AGGGAGGCCAAACGUCACCGUCCC	chr11:2154202-2154404(-)$1	202	92	116	23.2265
GUCCAUCUCCAAAGCCCUGGUGGC	chr19:39924061-39924263(-)$1	202	64	88	22.2892
AAAGCGAAAUUGGUCAUUCUCGCU	chr8:99057129-99057350(-)$1	221	136	160	22.9242
AAGACCUGUUCUAUUUUGUGUGUG	chr20:3578465-3578722(+)$1	257	27	51	22.4645
AGUUCACGUUCGCUUUUACCGUGU	chr16:56436826-56437094(-)$1	268	17	41	21.1110
UGCUCACCUGUACUCCCCUGAGCU	chrX:153063732-153064010(+)$1	278	3	27	23.0548
GAGAAUAAUAAAGCUCUGUGUUUU	chr19:46190670-46190955(-)$1	285	208	232	21.9154
CUCUCACAUUUCCUUUUUCUGUCA	chr2:96943876-96944135(-)$1	259	14	38	22.4245
AGGGAGGCCAAACGUCACCGUCCC	chr11:2154248-2154459(-)$1	211	147	171	23.2265
UCUACAAACACCUGAACCUGAAGA	chr4:79436880-79437164(+)$1	284	180	204	21.8347
AAGGAAACAACAUUCAACUCCCUA	chr12:9241707-9241911(-)$1	204	79	103	21.1013
UGCUCUCCCUCACAGAAAAGAUCA	chr3:53260766-53260990(-)$1	224	81	105	22.9024
CUCACUUCUAGACUUUCACGGUGG	chr16:19514691-19514983(-)$1	292	181	205	23.5515
AUCUAUGAAAUUAACAACAAAUGG	chr2:21234591-21234795(-)$1	204	95	119	21.7019
CAAUGGCCUCAUUCACACUCCACA	chr19:10930555-10930862(+)$1	307	251	275	23.1639
AGGGAGGCCAAACGUCACCGUCCC	chr11:2154241-2154448(-)$1	207	136	160	23.2265
GUUGGGUUUUAUUACUUUCCAGUU	chr7:127569160-127569427(+)$1	267	31	55	21.1741
CAAGGGAAUUCAAACUAUGUCUGU	chr18:29116067-29116352(+)$1	285	23	47	23.5489
GUCCAUCUCCAAAGCCCUGGUGGC	chr19:39924063-39924265(-)$1	202	66	90	22.2892
AGUGCGUAACCCUCCUUGGCCACU	chr22:42294646-42294882(+)$1	236	138	162	21.8817
UGCUCUCCCUCACAGAAAAGAUCA	chr3:53260738-53260966(-)$1	228	57	81	22.9024
AGGGGUCUUAUUUCUGCAUAUCCU	chr3:53262990-53263213(-)$1	223	20	44	23.4062
UGUCCCUACCCACUCUUUGCUACA	chr1:161192063-161192269(-)$1	206	144	168	22.3954
UAAGGGUUCUCUUUAUUCACCCUU	chr12:120635155-120635365(-)$1	210	18	42	21.9154
UUGAGGAAAGCAGACAUUGACCUC	chr6:33243541-33243760(+)$1	219	62	86	21.5913
UCCAGGGAAUGAAUUGGAGGUGUG	chr6:31616590-31616822(-)$1	232	5	29	22.1485
AGGGAGGCCAAACGUCACCGUCCC	chr11:2154211-2154414(-)$1	203	102	126	23.2265
aauaaguaucuuCUUUUUCUAUUU	chr1:220307643-220307889(+)$1	246	25	49	21.9293
CUGUCCCUAUCUCUCACUCUGGAC	chr1:228336363-228336660(+)$1	297	219	243	21.1550
GCUUUUUUUUUUUUCUUAAGGGUG	chr20:60963283-60963514(+)$1	231	61	85	21.0032
AGGGAGGCCAAACGUCACCGUCCC	chr11:2154188-2154400(-)$1	212	88	112	23.2265
UCACCUAAAGUUUACCCAGGAUGU	chr4:187541634-187541907(-)$1	273	92	116	20.6650
GGGGCAUUUUUUUCACAUUUGUUU	chr9:130212909-130213114(-)$1	205	123	147	23.4062
AGGGAGGCCAAACGUCACCGUCCC	chr11:2154222-2154425(-)$1	203	113	137	23.2265
GAUGUCCAUUUUGAUUCAUGACUU	chr2:21242656-21242864(-)$1	208	30	54	23.9982
AAGGGGAUAUCUUGAUAAACUGGA	chr18:43664369-43664618(-)$1	249	44	68	19.4845
AGGGAGGCCAAACGUCACCGUCCC	chr11:2154165-2154380(-)$1	215	68	92	23.2265
UUGAGGAAAGCAGACAUUGACCUC	chr6:33243475-33243685(+)$1	210	128	152	21.5913
UGGCCAUUAGAAAGAAGAUUGAGC	chr20:34800109-34800387(+)$1	278	118	142	21.4960
GUACUGCUUCUCUUCUUCUAGCUC	chr2:85823915-85824148(+)$1	233	139	163	22.3945
UUCUUCAGAACCCACCAGCGAAGC	chr13:99992553-99992856(+)$1	303	127	151	22.9057
AGGGAGGCCAAACGUCACCGUCCC	chr11:2154204-2154411(-)$1	207	99	123	23.2265
AAUGCUUUUGUUUUUUAGUGCGUU	chr6:133135811-133136015(+)$1	204	41	65	21.9413
UUGAGGAAAGCAGACAUUGACCUC	chr6:33243518-33243724(+)$1	206	85	109	21.5913
UUGAGCUAAAAACCAUGUGCUGUA	chr2:228678506-228678738(+)$1	232	107	131	22.3729
AGGGAGGCCAAACGUCACCGUCCC	chr11:2154144-2154352(-)$1	208	40	64	23.2265
AUCUAUGAAAUUAACAACAAAUGG	chr2:21234595-21234817(-)$1	222	117	141	21.7019
GUGCCCAGCCACUCAUCAGGGCAA	chr7:98565057-98565367(+)$1	310	118	142	23.0548
AGUAUUUCUGAAAAUUUUAAGUAU	chr4:109543038-109543254(+)$1	216	145	169	21.1267
GCGGCCACAGAUAUCACAGGCUUU	chr16:30455875-30456128(-)$1	253	16	40	20.3711
GCUGGAAAUUUCCACCAACCCAGC	chr17:26947460-26947688(-)$1	228	74	98	19.8593
CGCAUACCCAACGUUUCAUUAUGC	chr10:7769565-7769768(+)$1	203	65	89	22.7552
GGCUUCUUACAUCCUUUCUGGGGC	chr10:125805255-125805507(-)$1	252	57	81	23.4062
GUCCUCUGCCAGCCUACAGGAGGA	chr1:153963941-153964144(+)$1	203	168	192	21.8325
GGCUGCCUUCCGGAACAUUAAGAC	chr19:58905859-58906063(+)$1	204	36	60	18.8666
AAAGAUAAAUACAAGCAGAUCUUC	chrX:118603668-118603891(+)$1	223	117	141	22.2095
AGGGAGGCCAAACGUCACCGUCCC	chr11:2154225-2154431(-)$1	206	119	143	23.2265
UGCACUGCAAGACAGACAAGCACG	chr16:72984382-72984670(-)$1	288	88	112	22.8821

#DB
.(((((.............)))))	chr12:57538989-57539256(+)$1	1	51	75	23.1331
((((.(((...........)))))	chr11:2154202-2154404(-)$1	1	92	116	23.2265
(.(((((...........))))).	chr19:39924061-39924263(-)$1	1	64	88	22.2892
))(((((............)))))	chr8:99057129-99057350(-)$1	1	136	160	22.9242
((.(((.............).)).	chr20:3578465-3578722(+)$1	1	27	51	22.4645
....((((...........)))))	chr16:56436826-56437094(-)$1	1	17	41	21.1110
.(((((............))))).	chrX:153063732-153064010(+)$1	1	3	27	23.0548
(((((((...........))))))	chr19:46190670-46190955(-)$1	1	208	232	21.9154
((((.(((...........))).)	chr2:96943876-96944135(-)$1	1	14	38	22.4245
((((.(((...........)))))	chr11:2154248-2154459(-)$1	1	147	171	23.2265
(((.((............)).)))	chr4:79436880-79437164(+)$1	1	180	204	21.8347
.(((................))).	chr12:9241707-9241911(-)$1	1	79	103	21.1013
((.(((............))).).	chr3:53260766-53260990(-)$1	1	81	105	22.9024
)(((((.............)))))	chr16:19514691-19514983(-)$1	1	181	205	23.5515
..((((..............))))	chr2:21234591-21234795(-)$1	1	95	119	21.7019
...(((.............)))..	chr19:10930555-10930862(+)$1	1	251	275	23.1639
((((.(((...........)))))	chr11:2154241-2154448(-)$1	1	136	160	23.2265
.(((((...........)))))..	chr7:127569160-127569427(+)$1	1	31	55	21.1741
(((.(((............))).)	chr18:29116067-29116352(+)$1	1	23	47	23.5489
(.(((((...........))))).	chr19:39924063-39924265(-)$1	1	66	90	22.2892
((((.((...........))))))	chr22:42294646-42294882(+)$1	1	138	162	21.8817
((.(((............))).).	chr3:53260738-53260966(-)$1	1	57	81	22.9024
((((((.............)))))	chr3:53262990-53263213(-)$1	1	20	44	23.4062
(((..(............)..)))	chr1:161192063-161192269(-)$1	1	144	168	22.3954
(((((((...........))))))	chr12:120635155-120635365(-)$1	1	18	42	21.9154
..((((..............))))	chr6:33243541-33243760(+)$1	1	62	86	21.5913
((((.(..............).))	chr6:31616590-31616822(-)$1	1	5	29	22.1485
((((.(((...........)))))	chr11:2154211-2154414(-)$1	1	102	126	23.2265
((((((((...........)))))	chr1:220307643-220307889(+)$1	1	25	49	21.9293
((((((..............))))	chr1:228336363-228336660(+)$1	1	219	243	21.1550
((((((...........)))))).	chr20:60963283-60963514(+)$1	1	61	85	21.0032
((((.(((...........)))))	chr11:2154188-2154400(-)$1	1	88	112	23.2265
.(((((...........))).)).	chr4:187541634-187541907(-)$1	1	92	116	20.6650
((((((.............)))))	chr9:130212909-130213114(-)$1	1	123	147	23.4062
((((.(((...........)))))	chr11:2154222-2154425(-)$1	1	113	137	23.2265
.(.(((.............))).)	chr2:21242656-21242864(-)$1	1	30	54	23.9982
.((................))...	chr18:43664369-43664618(-)$1	1	44	68	19.4845
((((.(((...........)))))	chr11:2154165-2154380(-)$1	1	68	92	23.2265
..((((..............))))	chr6:33243475-33243685(+)$1	1	128	152	21.5913
.(((((.............)).))	chr20:34800109-34800387(+)$1	1	118	142	21.4960
((...(((...........)))..	chr2:85823915-85824148(+)$1	1	139	163	22.3945
(.((((.............)))).	chr13:99992553-99992856(+)$1	1	127	151	22.9057
((((.(((...........)))))	chr11:2154204-2154411(-)$1	1	99	123	23.2265
(((((..............)))))	chr6:133135811-133136015(+)$1	1	41	65	21.9413
..((((..............))))	chr6:33243518-33243724(+)$1	1	85	109	21.5913
)))(((............)))(((	chr2:228678506-228678738(+)$1	1	107	131	22.3729
((((.(((...........)))))	chr11:2154144-2154352(-)$1	1	40	64	23.2265
..((((..............))))	chr2:21234595-21234817(-)$1	1	117	141	21.7019
.(((((............))))).	chr7:98565057-98565367(+)$1	1	118	142	23.0548
.((((((...........))))))	chr4:109543038-109543254(+)$1	1	145	169	21.1267
..((((............))))((	chr16:30455875-30456128(-)$1	1	16	40	20.3711
(((((..............)))))	chr17:26947460-26947688(-)$1	1	74	98	19.8593
.(((((.............)))))	chr10:7769565-7769768(+)$1	1	65	89	22.7552
((((((.............)))))	chr10:125805255-125805507(-)$1	1	57	81	23.4062
)((((((...........))))))	chr1:153963941-153964144(+)$1	1	168	192	21.8325
((((................)).)	chr19:58905859-58906063(+)$1	1	36	60	18.8666
.(((((............))))))	chrX:118603668-118603891(+)$1	1	117	141	22.2095
((((.(((...........)))))	chr11:2154225-2154431(-)$1	1	119	143	23.2265
((((((((...........))).)	chr16:72984382-72984670(-)$1	1	88	112	22.8821

#PSSM
f : 0.23	e : 0.11	[ : 0.08	d : 0.08	g : 0.06	" : 0.06	: : 0.06	b : 0.05	c : 0.05	# : 0.03	! : 0.03	h : 0.03	% : 0.01	i : 0.01	$ : 0.01	+ : 0.01	
f : 0.27	e : 0.22	g : 0.06	c : 0.06	[ : 0.05	a : 0.05	" : 0.05	b : 0.05	d : 0.03	! : 0.03	h : 0.03	i : 0.01	# : 0.01	$ : 0.01	: : 0.01	
f : 0.27	e : 0.25	d : 0.15	[ : 0.06	g : 0.06	c : 0.05	b : 0.05	h : 0.03	# : 0.01	$ : 0.01	" : 0.01	
f : 0.27	e : 0.25	d : 0.15	c : 0.13	b : 0.03	g : 0.03	[ : 0.03	# : 0.01	! : 0.01	y : 0.01	" : 0.01	h : 0.01	
e : 0.22	[ : 0.22	d : 0.15	c : 0.11	f : 0.10	b : 0.05	y : 0.05	g : 0.03	! : 0.01	" : 0.01	h : 0.01	
c : 0.33	e : 0.18	d : 0.15	f : 0.10	a : 0.05	b : 0.05	y : 0.05	g : 0.03	w : 0.03	
c : 0.23	v : 0.18	u : 0.15	w : 0.15	e : 0.06	y : 0.05	t : 0.05	g : 0.03	f : 0.03	d : 0.01	b : 0.01	
c : 0.22	v : 0.18	u : 0.18	t : 0.16	w : 0.15	y : 0.05	d : 0.01	e : 0.01	
t : 0.42	v : 0.18	u : 0.18	w : 0.15	y : 0.05	
t : 0.42	v : 0.18	u : 0.18	w : 0.15	y : 0.05	
t : 0.42	v : 0.18	u : 0.18	w : 0.15	y : 0.05	
t : 0.42	v : 0.18	u : 0.18	w : 0.15	y : 0.05	
t : 0.42	v : 0.18	u : 0.18	w : 0.15	y : 0.05	
t : 0.42	v : 0.18	u : 0.18	w : 0.15	y : 0.05	
t : 0.42	v : 0.18	u : 0.18	w : 0.15	y : 0.05	
t : 0.42	v : 0.18	u : 0.18	w : 0.15	y : 0.05	
t : 0.42	v : 0.18	u : 0.18	w : 0.15	y : 0.05	
t : 0.37	v : 0.18	u : 0.18	w : 0.15	y : 0.05	e : 0.01	f : 0.01	c : 0.01	
t : 0.25	v : 0.18	w : 0.15	e : 0.10	c : 0.06	y : 0.05	f : 0.05	u : 0.03	g : 0.03	b : 0.03	a : 0.01	d : 0.01	
c : 0.33	e : 0.20	w : 0.11	f : 0.10	b : 0.06	d : 0.05	g : 0.03	y : 0.03	a : 0.01	2 : 0.01	h : 0.01	
c : 0.33	e : 0.22	d : 0.15	f : 0.10	] : 0.05	b : 0.05	g : 0.03	2 : 0.01	a : 0.01	h : 0.01	
c : 0.32	e : 0.22	d : 0.15	f : 0.10	] : 0.06	b : 0.05	g : 0.05	3 : 0.01	h : 0.01	
f : 0.28	e : 0.22	d : 0.13	] : 0.08	c : 0.06	g : 0.05	4 : 0.05	b : 0.03	a : 0.03	3 : 0.01	h : 0.01	
f : 0.27	] : 0.16	e : 0.15	d : 0.13	g : 0.06	4 : 0.05	c : 0.05	a : 0.01	3 : 0.01	2 : 0.01	h : 0.01	b : 0.01	i : 0.01	

#score	1313.0940944117494
#seq	59
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_UTR_m2_run2.txt

#BEAR
eee!!ddddmmmmdddd22eee	chr19:54971360-54971586(+)$1	226	200	222	10.5130
ddd!!cccnnnnnccc22dddd	chr1:161088100-161088509(+)$1	409	334	356	10.8146
ee[eeeeennnnneeeee]eee	chr20:5526311-5526586(-)$1	275	126	148	11.3181
eeeeddddoooooodddd]eee	chr11:10828898-10829159(-)$1	261	182	204	12.4381
ddd[ddddnnnnndddd333dd	chr11:75114079-75114321(+)$1	242	210	232	14.0603
dddeeeeennnnneeeee]ddd	chr17:30701866-30702120(+)$1	254	1	23	11.2039
dd[ddddannnnna]dddd]dd	chr2:198284124-198284403(-)$1	279	37	59	11.7788
fff[ddddnnnnndddd]ffff	chr10:103545082-103545357(-)$1	275	128	150	11.8816
ddd!!ddddmmmmdddd]dddd	chr22:20073330-20073574(+)$1	244	16	38	10.0562
ccc[ddddoooooodddd]ccc	chr21:46281688-46281952(-)$1	264	9	31	11.8737
eeeeecccooooooccc333ee	chr20:34312412-34312680(-)$1	268	77	99	10.4769
cc!!ddddoooooodddd]ccc	chr17:48828947-48829247(+)$1	300	202	224	11.9884
eee[ddddnnnnnddddeeeee	chr21:35476760-35477070(+)$1	310	277	299	13.3044

#otherMatches

#Seq PSSM
GGAGGCAGCGAGGGCUGGGUCC	chr19:54971360-54971586(+)$1	226	200	222	10.5130
CUUAUAAAGAGCGUUUUGAAGA	chr1:161088100-161088509(+)$1	409	334	356	10.8146
CUGAGCAGUUUAGUUGCUGGGG	chr20:5526311-5526586(-)$1	275	126	148	11.3181
AGAUCUGUAUGUUAGCAGUGUC	chr11:10828898-10829159(-)$1	261	182	204	12.4381
cagacccaccaaaugggaaacu	chr11:75114079-75114321(+)$1	242	210	232	14.0603
AUUUUCAGCCUCACUGAACAGU	chr17:30701866-30702120(+)$1	254	1	23	11.2039
AGUACUGCUAUAUGCCAGUCCU	chr2:198284124-198284403(-)$1	279	37	59	11.7788
UGUGAAAUGUUGGAUUUGACAU	chr10:103545082-103545357(-)$1	275	128	150	11.8816
GGCCAGCUUGACUAAGCCGCCA	chr22:20073330-20073574(+)$1	244	16	38	10.0562
AGGGGCUCAGACAAGAGCGUCU	chr21:46281688-46281952(-)$1	264	9	31	11.8737
UUCCAAAGGAAUUGCUUAUGUG	chr20:34312412-34312680(-)$1	268	77	99	10.4769
UGAAAUCAAAGAACUGAUGCAC	chr17:48828947-48829247(+)$1	300	202	224	11.9884
GUUUGAGGAACACCCUUGGCUU	chr21:35476760-35477070(+)$1	310	277	299	13.3044

#DB
(((..((((....))))..)))	chr19:54971360-54971586(+)$1	1	200	222	10.5130
(((..(((.....)))..))))	chr1:161088100-161088509(+)$1	1	334	356	10.8146
((.(((((.....))))).)))	chr20:5526311-5526586(-)$1	1	126	148	11.3181
((((((((......)))).)))	chr11:10828898-10829159(-)$1	1	182	204	12.4381
(((.((((.....))))...))	chr11:75114079-75114321(+)$1	1	210	232	14.0603
((((((((.....))))).)))	chr17:30701866-30702120(+)$1	1	1	23	11.2039
((.(((((.....).)))).))	chr2:198284124-198284403(-)$1	1	37	59	11.7788
(((.((((.....)))).))))	chr10:103545082-103545357(-)$1	1	128	150	11.8816
(((..((((....)))).))))	chr22:20073330-20073574(+)$1	1	16	38	10.0562
(((.((((......)))).)))	chr21:46281688-46281952(-)$1	1	9	31	11.8737
((((((((......)))...))	chr20:34312412-34312680(-)$1	1	77	99	10.4769
((..((((......)))).)))	chr17:48828947-48829247(+)$1	1	202	224	11.9884
(((.((((.....)))))))))	chr21:35476760-35477070(+)$1	1	277	299	13.3044

#PSSM
e : 0.38	d : 0.38	c : 0.15	f : 0.07	
e : 0.38	d : 0.38	c : 0.15	f : 0.07	
e : 0.30	d : 0.30	[ : 0.15	f : 0.07	c : 0.07	! : 0.07	
! : 0.30	e : 0.30	[ : 0.30	d : 0.07	
d : 0.53	! : 0.23	e : 0.23	
d : 0.69	c : 0.15	e : 0.15	
d : 0.69	c : 0.15	e : 0.15	
d : 0.61	c : 0.15	e : 0.15	a : 0.07	
n : 0.53	o : 0.30	d : 0.15	
n : 0.53	o : 0.30	m : 0.15	
n : 0.53	o : 0.30	m : 0.15	
n : 0.53	o : 0.30	m : 0.15	
n : 0.53	o : 0.30	m : 0.15	
d : 0.38	o : 0.30	e : 0.15	c : 0.07	a : 0.07	
d : 0.61	c : 0.15	e : 0.15	] : 0.07	
d : 0.69	c : 0.15	e : 0.15	
d : 0.69	e : 0.15	2 : 0.07	c : 0.07	
d : 0.30	e : 0.23	2 : 0.15	3 : 0.15	] : 0.15	
] : 0.38	d : 0.23	3 : 0.15	2 : 0.07	f : 0.07	e : 0.07	
e : 0.30	d : 0.23	3 : 0.15	c : 0.15	] : 0.07	f : 0.07	
e : 0.38	d : 0.38	c : 0.15	f : 0.07	
e : 0.38	d : 0.38	c : 0.15	f : 0.07	

#score	151.70862654524612
#seq	13
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_UTR_m2_run1.txt

#BEAR
:eeeeewwwwwwwwwwwwwweeeeeF	chr12:6645828-6646043(+)$1	215	100	126	18.7242
dddd[cccwwwwwwwwwwwwwwcccd	chr19:18418079-18418378(-)$1	299	99	125	21.7052
eeeeeeeeettttttttttteeeee:	chr17:42397487-42397736(-)$1	249	141	167	21.8533
ddd[eeeeettttttttttteeeeed	chrX:153664129-153664389(+)$1	260	148	174	23.1449
eee[eeeeewwwwwwwwwwwwwweee	chr22:38627144-38627420(-)$1	276	77	103	20.2415
]cccdddduuuuuuuuuuuudddd:c	chr7:99689177-99689437(+)$1	260	124	150	21.8811
d!!bb[ccctttttttttttccc]bb	chr19:46190667-46190958(-)$1	291	123	149	23.7493
bb[ccc[bbtttttttttttbb]ccc	chrX:153583109-153583325(-)$1	216	10	36	22.7219
gggggggvvvvvvvvvvvvvgggggg	chr6:27101134-27101404(+)$1	270	209	235	22.7485
cccfffffftttttttttttffffff	chr19:1390769-1391034(+)$1	265	136	162	23.0540
[hhhhhhhhttttttttttthhhhhh	chr20:57484638-57484843(+)$1	205	73	99	21.9559
dddd[ccctttttttttttcccdddd	chr14:105886163-105886483(+)$1	320	86	112	22.2279
=========ttttttttttt======	chr17:48474598-48474848(-)$1	250	49	75	24.1578
ddafffffftttttttttttffffff	chr19:39330697-39330945(-)$1	248	34	60	22.9745
[a[ffffffwwwwwwwwwwwwwwfff	chr19:3578690-3578934(+)$1	244	165	191	20.3622
[hhhhhhhhttttttttttthhhhhh	chr20:57484701-57484934(+)$1	233	10	36	21.9559
:ggggggguuuuuuuuuuuugggggg	chrX:153585729-153585981(-)$1	252	81	107	22.5634
dbb!!ddddtttttttttttdddd22	chr17:80559260-80559557(+)$1	297	210	236	23.1640
eee!!dddduuuuuuuuuuuudddd2	chr5:149779358-149779666(+)$1	308	94	120	22.8298
ggggggccctttttttttttccc444	chr16:70433285-70433534(-)$1	249	115	141	24.5005
hhhhh[ccctttttttttttccc]hh	chr1:76260413-76260659(+)$1	246	76	102	23.7364
cccfffffftttttttttttffffff	chr10:102107053-102107325(+)$1	272	60	86	23.0540
d[bbeeeeewwwwwwwwwwwwwweee	chr8:124221806-124222042(+)$1	236	145	171	20.0656
$ddddddddvvvvvvvvvvvvvdddd	chr3:184052584-184052856(+)$1	272	71	97	21.9727
iiiiiiiiiwwwwwwwwwwwwwwiii	chr11:494529-494817(-)$1	288	3	29	21.1360
ddcccyyyyyyyyyyyyyyyyccc]d	chr16:449564-449829(+)$1	265	40	66	20.5841
ffff[dddduuuuuuuuuuuuddddf	chr11:61081679-61081974(-)$1	295	187	213	22.5965
bhhhhhhhhttttttttttthhhhhh	chr19:11561451-11561749(+)$1	298	249	275	21.7471
dddd[ddddtttttttttttdddd]d	chr16:28222983-28223293(-)$1	310	227	253	23.8465
%%%fffffftttttttttttffffff	chr19:47112666-47112930(+)$1	264	183	209	21.0497
ddd[eeeeettttttttttteeeee2	chr5:180665120-180665339(-)$1	219	33	59	23.0028
====[cccvvvvvvvvvvvvvccc]=	chr2:97525533-97525817(-)$1	284	196	222	24.2163
b[ddddccctttttttttttccc444	chr11:64011877-64012109(-)$1	232	115	141	24.0414
=====[bbuuuuuuuuuuuubb]===	chr11:62327440-62327650(-)$1	210	146	172	22.9024
e!!ffffffuuuuuuuuuuuufffff	chr2:10567389-10567657(+)$1	268	191	217	22.6828
!!bb[ddddtttttttttttdddd]b	chr1:36807219-36807479(-)$1	260	212	238	23.6362
::dddd[bbtttttttttttbbdddd	chr19:50306495-50306735(+)$1	240	80	106	20.8726
dddd!!bbvvvvvvvvvvvvvbb22d	chr12:6635354-6635632(+)$1	278	107	133	22.0643
eeefffffftttttttttttffffff	chr19:49119881-49120119(-)$1	238	55	81	22.7909
dd"""bb[attttttttttta]bb33	chr1:36806737-36807042(-)$1	305	152	178	22.9984
hhhhhhh[awwwwwwwwwwwwwwa]h	chr5:180670712-180670959(-)$1	247	89	115	20.2085
ffff!!ccctttttttttttccc22f	chr1:55316877-55317131(-)$1	254	166	192	23.7909
ccc[cccwwwwwwwwwwwwwwccc]c	chr9:134371042-134371303(+)$1	261	116	142	21.9666
[cccdddduuuuuuuuuuuudddd]c	chr12:124809950-124810203(-)$1	253	95	121	23.3130
=========ttttttttttt======	chr17:21731141-21731400(+)$1	259	175	201	24.1578
dddd[dddduuuuuuuuuuuuddddd	chr15:89444681-89444994(-)$1	313	83	109	23.0419
:ggggggguuuuuuuuuuuugggggg	chr5:154193704-154193931(+)$1	227	48	74	22.5634
"""fffffftttttttttttffffff	chr7:102113956-102114232(-)$1	276	79	105	23.0072
ddd"""ccctttttttttttcccddd	chr17:75484727-75485050(+)$1	323	55	81	24.2198
!hhhhhhhhvvvvvvvvvvvvvhhhh	chr8:145114844-145115072(-)$1	228	155	181	21.3157
]bb:a[ccctttttttttttccc]a:	chr1:178995056-178995325(+)$1	269	226	252	21.8088
ddddddwwwwwwwwwwwwwwdddd]d	chr15:91418795-91419013(+)$1	218	16	42	20.5133
c[ddddwwwwwwwwwwwwwwdddd]c	chr16:2012638-2012866(-)$1	228	186	212	20.7170
##bb[ddddtttttttttttddddbb	chr3:53262190-53262468(-)$1	278	128	154	22.8707
bb####ccctttttttttttccc666	chr19:50412766-50413066(-)$1	300	182	208	22.3737
e!!a[cccvvvvvvvvvvvvvccc]a	chr17:76168271-76168550(+)$1	279	66	92	24.1000
!!ccc[ccctttttttttttcccccc	chr7:127732453-127732688(+)$1	235	72	98	24.8430
bccc!!ccctttttttttttcccccc	chr16:84599886-84600129(-)$1	243	159	185	24.6782

#otherMatches

#Seq PSSM
AUGGAAAUCCCAUCACCAUCUUCCAG	chr12:6645828-6646043(+)$1	215	100	126	18.7242
CAGUGAGCGCCCACCCAGACCGGCUG	chr19:18418079-18418378(-)$1	299	99	125	21.7052
GGCCGAGUCGGGCACCAAGGGACUCU	chr17:42397487-42397736(-)$1	249	141	167	21.8533
UGUUGUUGCUUUCCCACCCUGCAGCG	chrX:153664129-153664389(+)$1	260	148	174	23.1449
CAGCCUUGGUCAUCUAUAAUUUCCUG	chr22:38627144-38627420(-)$1	276	77	103	20.2415
CUCGGCACCAUCACCAAAACGUGCAA	chr7:99689177-99689437(+)$1	260	124	150	21.8811
GAACCCGCUCAUCGCCGGCAAGUAGG	chr19:46190667-46190958(-)$1	291	123	149	23.7493
GACGUGGUGGAGAAUGAGGACGGCAC	chrX:153583109-153583325(-)$1	216	10	36	22.7219
UCCAUGUGAAAGAAAGUGAGACAUGG	chr6:27101134-27101404(+)$1	270	209	235	22.7485
UGCGCCGUGGAGAUGAUGCACAUGGC	chr19:1390769-1391034(+)$1	265	136	162	23.0540
CUCUUGGCUUUGCUCUCUUUGGUUAA	chr20:57484638-57484843(+)$1	205	73	99	21.9559
gcagcgcggccccuuuaaacgccugc	chr14:105886163-105886483(+)$1	320	86	112	22.2279
GCGGCGACGGAGGGCUCAGGCGUCGU	chr17:48474598-48474848(-)$1	250	49	75	24.1578
GUCGGGGCCCAAGUCGCUACGGCCCC	chr19:39330697-39330945(-)$1	248	34	60	22.9745
GGACCCCCCAAAUUACUCACUACGGG	chr19:3578690-3578934(+)$1	244	165	191	20.3622
CUCUUGGCUUUGCUCUCUUUGGUUAA	chr20:57484701-57484934(+)$1	233	10	36	21.9559
ACACCAUCCUCAUCAAGUACGGUGGU	chrX:153585729-153585981(-)$1	252	81	107	22.5634
UGGACUUCACCUCUCAGCACUGAAAA	chr17:80559260-80559557(+)$1	297	210	236	23.1640
GUUACCUUCCCUCGCUCCACAGAAGA	chr5:149779358-149779666(+)$1	308	94	120	22.8298
CUGGCGCCCGACAUGUGAAGGGGAAC	chr16:70433285-70433534(-)$1	249	115	141	24.5005
aaaGACCGGUAUUUUAUUUUCUGCUU	chr1:76260413-76260659(+)$1	246	76	102	23.7364
GCGGCUAGCGCCGACAACCAGCUAGC	chr10:102107053-102107325(+)$1	272	60	86	23.0540
CAGGCAGGAACAAGCCCCCCUACUCC	chr8:124221806-124222042(+)$1	236	145	171	20.0656
AGUGGCUCCGUGAAGCAGAGGAGGAG	chr3:184052584-184052856(+)$1	272	71	97	21.9727
ACACGGGCCCAUGCCUCCCUUCUGGC	chr11:494529-494817(-)$1	288	3	29	21.1360
CAACCAUUAUCUCUCGCUGCAGGUCU	chr16:449564-449829(+)$1	265	40	66	20.5841
CAGAUCAGGUGUGUGUGUUUUUCUGU	chr11:61081679-61081974(-)$1	295	187	213	22.5965
UGUCCCUGCCACCCCUCCUAGUGGGG	chr19:11561451-11561749(+)$1	298	249	275	21.7471
ggccgccgccaccucugcccgcggag	chr16:28222983-28223293(-)$1	310	227	253	23.8465
AGAGCAUGCCCUUUGCCGUUGCAUGC	chr19:47112666-47112930(+)$1	264	183	209	21.0497
CUUGAGAUGGGCAGAAUUAACAUCUG	chr5:180665120-180665339(-)$1	219	33	59	23.0028
GGUGGGCCUGCUGUGGACAAUGGCAU	chr2:97525533-97525817(-)$1	284	196	222	24.2163
GCGGGCCCUUUAAUAAAGCUAGGAUA	chr11:64011877-64012109(-)$1	232	115	141	24.0414
GGGCAGGGAUAUAAGAAGCACUGUGU	chr11:62327440-62327650(-)$1	210	146	172	22.9024
CUCUCUUUGUCUGCCUGUUUCUAAGG	chr2:10567389-10567657(+)$1	268	191	217	22.6828
GACUCUCCCGGGCCACAAUAGGGACA	chr1:36807219-36807479(-)$1	260	212	238	23.6362
UCGGUGCAGUUCCAGAAUUUCUCACC	chr19:50306495-50306735(+)$1	240	80	106	20.8726
GGCAAACGUCACCCCCCCUUCCGGCU	chr12:6635354-6635632(+)$1	278	107	133	22.0643
UCCUGGCCGGGAAAACAAGACGGCCG	chr19:49119881-49120119(-)$1	238	55	81	22.7909
CUCUUUCCGUCCCUCUCUUUCUGAUC	chr1:36806737-36807042(-)$1	305	152	178	22.9984
UGGUGCUAGUUUCUCUAAGCCAUCCA	chr5:180670712-180670959(-)$1	247	89	115	20.2085
GGACAGCAUCAGGUGGGAAAGUGGAG	chr1:55316877-55317131(-)$1	254	166	192	23.7909
GGGAGCCGUGAAGCUGCAGGAGGCCC	chr9:134371042-134371303(+)$1	261	116	142	21.9666
ACCCCCUGAUCAUGCGGCUGCAGGCG	chr12:124809950-124810203(-)$1	253	95	121	23.3130
CUCUUUCUGACUACAACAUCCAGAAG	chr17:21731141-21731400(+)$1	259	175	201	24.1578
GGCCUCCAGCAGCUACAAGACCUGGG	chr15:89444681-89444994(-)$1	313	83	109	23.0419
CAGGCCUGGAGUUACUAGGACAGGCC	chr5:154193704-154193931(+)$1	227	48	74	22.5634
CCACCACCUUCUUCUCUCCCAGGUGG	chr7:102113956-102114232(-)$1	276	79	105	23.0072
CUGACUCGUCCCCAUCCCCCACGCAG	chr17:75484727-75485050(+)$1	323	55	81	24.2198
CGCUUCCACUUUGCCAUCGACCGUGG	chr8:145114844-145115072(-)$1	228	155	181	21.3157
ggcgggcgggAAAAUGCGGACCGGCA	chr1:178995056-178995325(+)$1	269	226	252	21.8088
GGUCGGCACUCUUCACCCUCCCGAGC	chr15:91418795-91419013(+)$1	218	16	42	20.5133
CUCCUGACUCCUUCCCUCACCAGGUG	chr16:2012638-2012866(-)$1	228	186	212	20.7170
UGCCAUCAUCUAUAACAACAAUGAGG	chr3:53262190-53262468(-)$1	278	128	154	22.8707
UCACUUGCCACCCAGACUCCGGCCAC	chr19:50412766-50413066(-)$1	300	182	208	22.3737
CAAGUGCCUCAGCUUCCCCCCGGCCC	chr17:76168271-76168550(+)$1	279	66	92	24.1000
UUAUGUGAUUUUUCUGAUACGUCCAU	chr7:127732453-127732688(+)$1	235	72	98	24.8430
ggugccugcagccuucauaagcacac	chr16:84599886-84600129(-)$1	243	159	185	24.6782

#DB
.(((((..............))))))	chr12:6645828-6646043(+)$1	1	100	126	18.7242
((((.(((..............))))	chr19:18418079-18418378(-)$1	1	99	125	21.7052
))))(((((...........))))).	chr17:42397487-42397736(-)$1	1	141	167	21.8533
(((.(((((...........))))))	chrX:153664129-153664389(+)$1	1	148	174	23.1449
(((.(((((..............)))	chr22:38627144-38627420(-)$1	1	77	103	20.2415
.)))((((............)))).(	chr7:99689177-99689437(+)$1	1	124	150	21.8811
(..((.(((...........))).))	chr19:46190667-46190958(-)$1	1	123	149	23.7493
((.(((.((...........)).)))	chrX:153583109-153583325(-)$1	1	10	36	22.7219
(((((((.............))))))	chr6:27101134-27101404(+)$1	1	209	235	22.7485
(((((((((...........))))))	chr19:1390769-1391034(+)$1	1	136	162	23.0540
.((((((((...........))))))	chr20:57484638-57484843(+)$1	1	73	99	21.9559
((((.(((...........)))))))	chr14:105886163-105886483(+)$1	1	86	112	22.2279
(((((((((...........))))))	chr17:48474598-48474848(-)$1	1	49	75	24.1578
(((((((((...........))))))	chr19:39330697-39330945(-)$1	1	34	60	22.9745
.(.((((((..............)))	chr19:3578690-3578934(+)$1	1	165	191	20.3622
.((((((((...........))))))	chr20:57484701-57484934(+)$1	1	10	36	21.9559
.(((((((............))))))	chrX:153585729-153585981(-)$1	1	81	107	22.5634
(((..((((...........))))..	chr17:80559260-80559557(+)$1	1	210	236	23.1640
(((..((((............)))).	chr5:149779358-149779666(+)$1	1	94	120	22.8298
(((((((((...........)))...	chr16:70433285-70433534(-)$1	1	115	141	24.5005
(((((.(((...........))).))	chr1:76260413-76260659(+)$1	1	76	102	23.7364
(((((((((...........))))))	chr10:102107053-102107325(+)$1	1	60	86	23.0540
(.(((((((..............)))	chr8:124221806-124222042(+)$1	1	145	171	20.0656
.((((((((.............))))	chr3:184052584-184052856(+)$1	1	71	97	21.9727
(((((((((..............)))	chr11:494529-494817(-)$1	1	3	29	21.1360
(((((................))).)	chr16:449564-449829(+)$1	1	40	66	20.5841
((((.((((............)))))	chr11:61081679-61081974(-)$1	1	187	213	22.5965
(((((((((...........))))))	chr19:11561451-11561749(+)$1	1	249	275	21.7471
((((.((((...........)))).)	chr16:28222983-28223293(-)$1	1	227	253	23.8465
...((((((...........))))))	chr19:47112666-47112930(+)$1	1	183	209	21.0497
(((.(((((...........))))).	chr5:180665120-180665339(-)$1	1	33	59	23.0028
((((.(((.............))).)	chr2:97525533-97525817(-)$1	1	196	222	24.2163
(.(((((((...........)))...	chr11:64011877-64012109(-)$1	1	115	141	24.0414
(((((.((............)).)))	chr11:62327440-62327650(-)$1	1	146	172	22.9024
(..((((((............)))))	chr2:10567389-10567657(+)$1	1	191	217	22.6828
..((.((((...........)))).)	chr1:36807219-36807479(-)$1	1	212	238	23.6362
..((((.((...........))))))	chr19:50306495-50306735(+)$1	1	80	106	20.8726
((((..((.............))..)	chr12:6635354-6635632(+)$1	1	107	133	22.0643
)))((((((...........))))))	chr19:49119881-49120119(-)$1	1	55	81	22.7909
((...((.(...........).))..	chr1:36806737-36807042(-)$1	1	152	178	22.9984
(((((((.(..............).)	chr5:180670712-180670959(-)$1	1	89	115	20.2085
((((..(((...........)))..)	chr1:55316877-55317131(-)$1	1	166	192	23.7909
(((.(((..............))).)	chr9:134371042-134371303(+)$1	1	116	142	21.9666
.(((((((............)))).)	chr12:124809950-124810203(-)$1	1	95	121	23.3130
(((((((((...........))))))	chr17:21731141-21731400(+)$1	1	175	201	24.1578
((((.((((............)))))	chr15:89444681-89444994(-)$1	1	83	109	23.0419
.(((((((............))))))	chr5:154193704-154193931(+)$1	1	48	74	22.5634
...((((((...........))))))	chr7:102113956-102114232(-)$1	1	79	105	23.0072
(((...(((...........))))))	chr17:75484727-75485050(+)$1	1	55	81	24.2198
.((((((((.............))))	chr8:145114844-145115072(-)$1	1	155	181	21.3157
.)).(.(((...........))).).	chr1:178995056-178995325(+)$1	1	226	252	21.8088
((((((..............)))).)	chr15:91418795-91419013(+)$1	1	16	42	20.5133
(.((((..............)))).)	chr16:2012638-2012866(-)$1	1	186	212	20.7170
..((.((((...........))))))	chr3:53262190-53262468(-)$1	1	128	154	22.8707
((....(((...........)))...	chr19:50412766-50413066(-)$1	1	182	208	22.3737
(..(.(((.............))).)	chr17:76168271-76168550(+)$1	1	66	92	24.1000
..(((.(((...........))))))	chr7:127732453-127732688(+)$1	1	72	98	24.8430
((((..(((...........))))))	chr16:84599886-84600129(-)$1	1	159	185	24.6782

#PSSM
d : 0.25	e : 0.10	b : 0.08	: : 0.06	c : 0.06	[ : 0.06	= : 0.06	! : 0.05	] : 0.03	g : 0.03	h : 0.03	f : 0.03	$ : 0.01	i : 0.01	% : 0.01	" : 0.01	# : 0.01	
d : 0.22	c : 0.10	h : 0.10	e : 0.08	! : 0.08	b : 0.06	g : 0.06	= : 0.06	[ : 0.05	f : 0.03	a : 0.01	i : 0.01	% : 0.01	: : 0.01	" : 0.01	# : 0.01	
d : 0.22	c : 0.13	h : 0.10	e : 0.08	b : 0.08	g : 0.06	= : 0.06	! : 0.05	[ : 0.03	f : 0.03	" : 0.03	a : 0.01	i : 0.01	% : 0.01	# : 0.01	
d : 0.17	f : 0.17	c : 0.10	h : 0.10	[ : 0.06	b : 0.06	g : 0.06	= : 0.06	e : 0.03	! : 0.03	" : 0.03	i : 0.01	: : 0.01	# : 0.01	a : 0.01	
[ : 0.15	f : 0.13	d : 0.12	e : 0.10	h : 0.10	! : 0.08	c : 0.06	g : 0.06	= : 0.05	" : 0.03	b : 0.01	i : 0.01	a : 0.01	# : 0.01	
d : 0.24	f : 0.13	e : 0.10	c : 0.10	[ : 0.08	h : 0.08	g : 0.06	! : 0.05	= : 0.03	i : 0.01	y : 0.01	b : 0.01	" : 0.01	# : 0.01	
c : 0.25	d : 0.17	f : 0.13	e : 0.08	h : 0.08	w : 0.05	g : 0.05	b : 0.05	[ : 0.03	= : 0.03	i : 0.01	y : 0.01	
c : 0.24	d : 0.17	f : 0.13	e : 0.08	w : 0.06	b : 0.06	h : 0.06	= : 0.03	g : 0.03	[ : 0.03	v : 0.01	i : 0.01	y : 0.01	
c : 0.17	f : 0.13	d : 0.13	w : 0.08	e : 0.08	u : 0.08	v : 0.06	h : 0.06	b : 0.03	= : 0.03	a : 0.03	t : 0.01	i : 0.01	y : 0.01	
t : 0.55	w : 0.17	u : 0.15	v : 0.10	y : 0.01	
t : 0.55	w : 0.17	u : 0.15	v : 0.10	y : 0.01	
t : 0.55	w : 0.17	u : 0.15	v : 0.10	y : 0.01	
t : 0.55	w : 0.17	u : 0.15	v : 0.10	y : 0.01	
t : 0.55	w : 0.17	u : 0.15	v : 0.10	y : 0.01	
t : 0.55	w : 0.17	u : 0.15	v : 0.10	y : 0.01	
t : 0.55	w : 0.17	u : 0.15	v : 0.10	y : 0.01	
t : 0.55	w : 0.17	u : 0.15	v : 0.10	y : 0.01	
t : 0.55	w : 0.17	u : 0.15	v : 0.10	y : 0.01	
t : 0.55	w : 0.17	u : 0.15	v : 0.10	y : 0.01	
t : 0.53	w : 0.17	u : 0.15	v : 0.10	c : 0.01	y : 0.01	
c : 0.18	d : 0.13	w : 0.12	f : 0.10	v : 0.08	e : 0.06	u : 0.06	b : 0.05	g : 0.05	h : 0.05	= : 0.03	y : 0.01	a : 0.01	
c : 0.25	d : 0.18	f : 0.12	w : 0.10	e : 0.06	b : 0.06	g : 0.05	h : 0.05	= : 0.03	v : 0.03	] : 0.01	
c : 0.25	d : 0.24	f : 0.12	w : 0.08	e : 0.06	h : 0.06	g : 0.05	] : 0.03	= : 0.03	b : 0.03	
d : 0.25	c : 0.13	f : 0.13	e : 0.10	h : 0.06	] : 0.05	g : 0.05	= : 0.05	4 : 0.03	2 : 0.03	i : 0.01	b : 0.01	a : 0.01	6 : 0.01	
] : 0.17	f : 0.13	d : 0.12	e : 0.10	h : 0.08	c : 0.06	g : 0.05	= : 0.05	2 : 0.05	b : 0.03	4 : 0.03	: : 0.01	i : 0.01	3 : 0.01	a : 0.01	6 : 0.01	
d : 0.18	f : 0.17	c : 0.12	h : 0.10	= : 0.06	b : 0.05	g : 0.05	2 : 0.05	: : 0.03	e : 0.03	4 : 0.03	F : 0.01	i : 0.01	3 : 0.01	6 : 0.01	a : 0.01	

#score	1305.0051734120605
#seq	58
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_UTR_m3_run1.txt

#BEAR
iiiiiia!!eeeeettttttttttteeeee22a]iiii	chr5:73935902-73936220(-)$1	318	247	285	30.4982
gggggggeeeeecccssssssssssccc]eeeee6666	chr17:29632109-29632459(+)$1	350	286	324	24.0719
[bb!!bb[eeeeebbssssssssssbb]eeeee]bb44	chr14:23778303-23778565(+)$1	262	64	102	26.7504
ccc"""dddd[bbuuuuuuuuuuuubbdddd333ccc2	chr7:104752716-104752963(-)$1	247	126	164	26.1863
bb[eeeee[a[ddddssssssssssdddd]a]eeeee]	chr20:23356289-23356554(-)$1	265	68	106	24.0868
iiiiiia!!eeeeettttttttttteeeee22a]iiii	chr5:73935748-73936004(-)$1	256	31	69	30.4982

#otherMatches

#Seq PSSM
UGCCCGCCGCUGCCCUCCCACAGCAGGCAGAAGCCGGG	chr5:73935902-73936220(-)$1	318	247	285	30.4982
CAGUGACUUUGGCAGGUGAUAUUGAUUGUCCAGAAAAA	chr17:29632109-29632459(+)$1	350	286	324	24.0719
GGGGAAUGUUUUGGCAAGUUUAGGGGCACAGGAGAUGU	chr14:23778303-23778565(+)$1	262	64	102	26.7504
GGUGGUGCCGUGCUGUUCAGACUUUGUUGGUUAAACUG	chr7:104752716-104752963(-)$1	247	126	164	26.1863
GUGGCCACGAGGACUUGCAGGCUAUAGUUAUGGUGGUG	chr20:23356289-23356554(-)$1	265	68	106	24.0868
UGCCCGCCGCUGCCCUCCCACAGCAGGCAGAAGCCGGG	chr5:73935748-73936004(-)$1	256	31	69	30.4982

#DB
(((((((..(((((...........)))))..).))))	chr5:73935902-73936220(-)$1	1	247	285	30.4982
(((((((((((((((..........))).)))))....	chr17:29632109-29632459(+)$1	1	286	324	24.0719
.((..((.(((((((..........)).))))).))..	chr14:23778303-23778565(+)$1	1	64	102	26.7504
(((...((((.((............))))))...))).	chr7:104752716-104752963(-)$1	1	126	164	26.1863
((.(((((.(.((((..........)))).).))))).	chr20:23356289-23356554(-)$1	1	68	106	24.0868
(((((((..(((((...........)))))..).))))	chr5:73935748-73936004(-)$1	1	31	69	30.4982

#PSSM
i : 0.33	g : 0.16	[ : 0.16	c : 0.16	b : 0.16	
i : 0.33	b : 0.33	g : 0.16	c : 0.16	
i : 0.33	g : 0.16	b : 0.16	c : 0.16	[ : 0.16	
i : 0.33	g : 0.16	! : 0.16	" : 0.16	e : 0.16	
i : 0.33	g : 0.16	! : 0.16	" : 0.16	e : 0.16	
i : 0.33	g : 0.16	b : 0.16	" : 0.16	e : 0.16	
a : 0.33	g : 0.16	b : 0.16	d : 0.16	e : 0.16	
! : 0.33	e : 0.33	[ : 0.16	d : 0.16	
! : 0.33	e : 0.33	d : 0.16	[ : 0.16	
e : 0.66	d : 0.16	a : 0.16	
e : 0.66	[ : 0.33	
e : 0.66	b : 0.16	d : 0.16	
e : 0.50	c : 0.16	b : 0.16	d : 0.16	
e : 0.33	c : 0.16	b : 0.16	u : 0.16	d : 0.16	
t : 0.33	c : 0.16	b : 0.16	u : 0.16	d : 0.16	
s : 0.50	t : 0.33	u : 0.16	
s : 0.50	t : 0.33	u : 0.16	
s : 0.50	t : 0.33	u : 0.16	
s : 0.50	t : 0.33	u : 0.16	
s : 0.50	t : 0.33	u : 0.16	
s : 0.50	t : 0.33	u : 0.16	
s : 0.50	t : 0.33	u : 0.16	
s : 0.50	t : 0.33	u : 0.16	
s : 0.50	t : 0.33	u : 0.16	
s : 0.50	t : 0.33	u : 0.16	
e : 0.33	b : 0.33	c : 0.16	d : 0.16	
e : 0.33	b : 0.33	c : 0.16	d : 0.16	
e : 0.33	d : 0.33	c : 0.16	] : 0.16	
e : 0.50	d : 0.33	] : 0.16	
e : 0.66	d : 0.16	] : 0.16	
2 : 0.33	e : 0.33	d : 0.16	a : 0.16	
2 : 0.33	e : 0.33	3 : 0.16	] : 0.16	
e : 0.50	a : 0.33	3 : 0.16	
] : 0.50	e : 0.33	3 : 0.16	
i : 0.33	6 : 0.16	b : 0.16	c : 0.16	e : 0.16	
i : 0.33	6 : 0.16	b : 0.16	c : 0.16	e : 0.16	
i : 0.33	6 : 0.16	4 : 0.16	c : 0.16	e : 0.16	
i : 0.33	6 : 0.16	4 : 0.16	2 : 0.16	] : 0.16	

#score	162.09208130915
#seq	6
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF215XPR_WDR3_transcript_m2_run2.txt

#BEAR
[ccceeeeeooooooeeeee]cc	chr17:19093316-19093590(-)$1	274	156	179	16.5216
g!!ffffffooooooffffff33	chr2:97559879-97560185(-)$1	306	162	185	12.3098
fccceeeeeooooooeeeee]cc	chr17:18965249-18965542(+)$1	293	99	122	16.1804
cc[aeeeeemmmmeeeee]a]cc	chr2:133015176-133015435(-)$1	259	190	213	10.7170
[ccceeeeellleeeee333ccc	chr19:2271132-2271388(+)$1	256	132	155	10.7000
ddd[eeeeeooooooeeeeeddd	chr17:19015769-19016004(-)$1	235	136	159	15.5070
ddd[eeeeeooooooeeeeeddd	chr17:19091288-19091524(+)$1	236	121	144	15.5070
ddd[eeeeeooooooeeeeeddd	chr17:19093390-19093598(-)$1	208	121	144	15.5070
dddd[ddddoooooodddddddd	chr7:98479277-98479528(+)$1	251	181	204	11.5965
cc[ffffffooooooffffff33	chr17:19015804-19016040(-)$1	236	181	204	12.4871
iiiiiiiiiooooooiiiiiiii	chr11:93454803-93455053(+)$1	250	48	71	12.1585
[ccceeeeeooooooeeeee]cc	chr17:19091334-19091541(+)$1	207	118	141	16.5216
c[gggggggoooooogggggggc	chr8:9628268-9628635(+)$1	367	135	158	12.6021
[ccceeeeeooooooeeeee]cc	chr17:19091324-19091534(+)$1	210	128	151	16.5216

#otherMatches

#Seq PSSM
uggcguugcuuggcugcaacugc	chr17:19093316-19093590(-)$1	274	156	179	16.5216
GCUGGGUAUGUUUGGGUACCCCU	chr2:97559879-97560185(-)$1	306	162	185	12.3098
uggcguugcuuggcugcaacugc	chr17:18965249-18965542(+)$1	293	99	122	16.1804
CGGUGAGAAAGCCUUCUCUAGCG	chr2:133015176-133015435(-)$1	259	190	213	10.7170
GGGCGGGGCGGGGUCUUUUGGCC	chr19:2271132-2271388(+)$1	256	132	155	10.7000
ggaagagagguagcguuuucucc	chr17:19015769-19016004(-)$1	235	136	159	15.5070
ggaagagagguagcguuuucucc	chr17:19091288-19091524(+)$1	236	121	144	15.5070
ggaagagagguagcguuuucucc	chr17:19093390-19093598(-)$1	208	121	144	15.5070
UAUGUGCCUUCUAUUAGGCCAUG	chr7:98479277-98479528(+)$1	251	181	204	11.5965
guagcguuuucuccugagcguga	chr17:19015804-19016040(-)$1	236	181	204	12.4871
guguguguguguguguACGCACA	chr11:93454803-93455053(+)$1	250	48	71	12.1585
uggcguugcuuggcugcaacugc	chr17:19091334-19091541(+)$1	207	118	141	16.5216
ugagcacaugagcggauguguug	chr8:9628268-9628635(+)$1	367	135	158	12.6021
uggcguugcuuggcugcaacugc	chr17:19091324-19091534(+)$1	210	128	151	16.5216

#DB
.((((((((......))))).))	chr17:19093316-19093590(-)$1	1	156	179	16.5216
(..((((((......))))))..	chr2:97559879-97560185(-)$1	1	162	185	12.3098
)((((((((......))))).))	chr17:18965249-18965542(+)$1	1	99	122	16.1804
((.((((((....))))).).))	chr2:133015176-133015435(-)$1	1	190	213	10.7170
.((((((((...)))))...)))	chr19:2271132-2271388(+)$1	1	132	155	10.7000
(((.(((((......))))))))	chr17:19015769-19016004(-)$1	1	136	159	15.5070
(((.(((((......))))))))	chr17:19091288-19091524(+)$1	1	121	144	15.5070
(((.(((((......))))))))	chr17:19093390-19093598(-)$1	1	121	144	15.5070
((((.((((......))))))))	chr7:98479277-98479528(+)$1	1	181	204	11.5965
((.((((((......))))))..	chr17:19015804-19016040(-)$1	1	181	204	12.4871
(((((((((......))))))))	chr11:93454803-93455053(+)$1	1	48	71	12.1585
.((((((((......))))).))	chr17:19091334-19091541(+)$1	1	118	141	16.5216
(.(((((((......))))))))	chr8:9628268-9628635(+)$1	1	135	158	12.6021
.((((((((......))))).))	chr17:19091324-19091534(+)$1	1	128	151	16.5216

#PSSM
[ : 0.28	d : 0.28	c : 0.21	g : 0.07	f : 0.07	i : 0.07	
c : 0.49	d : 0.28	! : 0.07	i : 0.07	[ : 0.07	
c : 0.35	d : 0.28	[ : 0.14	! : 0.07	i : 0.07	g : 0.07	
c : 0.35	[ : 0.21	f : 0.14	a : 0.07	d : 0.07	i : 0.07	g : 0.07	
e : 0.64	f : 0.14	[ : 0.07	i : 0.07	g : 0.07	
e : 0.64	f : 0.14	d : 0.07	i : 0.07	g : 0.07	
e : 0.64	f : 0.14	d : 0.07	i : 0.07	g : 0.07	
e : 0.64	f : 0.14	d : 0.07	i : 0.07	g : 0.07	
e : 0.64	f : 0.14	d : 0.07	i : 0.07	g : 0.07	
o : 0.85	m : 0.07	l : 0.07	
o : 0.85	m : 0.07	l : 0.07	
o : 0.85	m : 0.07	l : 0.07	
o : 0.85	m : 0.07	e : 0.07	
o : 0.85	e : 0.14	
o : 0.85	e : 0.14	
e : 0.64	f : 0.14	d : 0.07	i : 0.07	g : 0.07	
e : 0.64	f : 0.14	d : 0.07	i : 0.07	g : 0.07	
e : 0.57	f : 0.14	3 : 0.07	d : 0.07	i : 0.07	g : 0.07	
e : 0.49	f : 0.14	] : 0.07	3 : 0.07	d : 0.07	i : 0.07	g : 0.07	
e : 0.49	f : 0.14	a : 0.07	3 : 0.07	d : 0.07	i : 0.07	g : 0.07	
] : 0.35	d : 0.28	f : 0.14	c : 0.07	i : 0.07	g : 0.07	
c : 0.42	d : 0.28	3 : 0.14	i : 0.07	g : 0.07	
c : 0.49	d : 0.28	3 : 0.14	i : 0.07	

#score	194.83783655437134
#seq	14
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_transcript_m1_run1.txt

#BEAR
gggggeeeee[a[ddddoooooodddd]a22eeeee333g	chr9:139720735-139720995(+)$1	260	175	215	14.8306
dddd[bb####ccc[cccooooooccc]ccc4444bbddd	chr11:65190356-65190613(+)$1	257	157	197	15.1050
"hhhhhhhh[a[a[a[cccnnnnnccc]a]a]a]hhhhhh	chr14:100704552-100704804(-)$1	252	97	137	13.0433
iiiiiiiii[ccc!!annnnna22ccc]iiiiiiiiiddd	chr16:1427246-1427536(-)$1	290	249	289	12.6194
a[a[eeeee[dddd[cccooooooccc]ddddeeeeea]a	chr7:1497387-1497627(-)$1	240	159	199	14.7489
b!!dddd[ccc!!eeeeeooooooeeeee22ccc]dddd]	chr19:34287171-34287445(+)$1	274	227	267	13.6275
ddd"""bb[ccc!!ddddoooooodddd22ccc]bb22dd	chr16:89654682-89654972(+)$1	290	60	100	14.7623
c!!dddd!!ccc!!ddddooooooddddcccdddd22ccc	chr2:97534560-97534861(-)$1	301	203	243	15.4421
ggggg[iiiiiiiiicccmmmmccc4444iiiiiiiii33	chr16:447244-447525(+)$1	281	33	73	14.5348
=====!!gggggggcccaooooooa]ccc4444ggggggg	chr10:43902725-43902987(-)$1	262	169	209	17.5462
=====[eeeee[bb[ccclllccc]bb]eeeee=======	chr1:27022552-27022811(+)$1	259	145	185	12.9561
=======ccc[ccc[bbqqqqqqqqbb]ccc]ccc]====	chr19:3360111-3360340(+)$1	229	112	152	11.5022
"bbdddd!!gggggggbboooooobb]gggggggdddd]b	chr2:178128930-178129165(-)$1	235	18	58	13.3959
a[===========!!cccnnnnnccc===========]a3	chr22:50037514-50037815(-)$1	301	50	90	17.1033
"dddd!!bba[bbccc[bboooooobb]ccc22bb]a]bb	chr7:23454478-23454730(-)$1	252	40	80	12.4694
a[===========[a[bbmmmmbba===========a]bb	chr1:228330438-228330684(+)$1	246	113	153	13.2044
b[ccc[ccc[bb[ccc[cccmmmmccc]ccc]bb]ccc]c	chr21:46493851-46494128(+)$1	277	64	104	12.4991
cccdddd[ccc!!a[cccooooooccc]a22ccc]dddd2	chr9:96929145-96929414(+)$1	269	82	122	16.3590
gggg!!ggggggg!!cccooooooccc]ggggggg333gg	chr14:102228219-102228449(+)$1	230	86	126	19.4030
[ccc!!bbccc[ffffffooooooffffff]ccc22bb22	chr19:41770609-41770858(+)$1	249	164	204	13.2426
g[a[eeeee[ccc[ddddmmmmddddccc]eeeee333a]	chr17:39845366-39845608(+)$1	242	176	216	12.7020
ddd[ggggggg!!ccc[cccmmmmccc]ccc22ggggggg	chr2:47402654-47402926(-)$1	272	38	78	13.2670
gggg!!ggggggg!!cccooooooccc]ggggggg333gg	chr14:102228249-102228501(+)$1	252	56	96	19.4030
c[eeeee!!eeeee[cccooooooccc]eeeee333eeee	chr19:18547997-18548296(-)$1	299	125	165	15.9051
ggggg!!eeeee"""cccmmmmccceeeee22gggggggf	chr20:61557147-61557390(-)$1	243	84	124	12.8049
fffff[a[cccccc[cccnnnnnccc]ccc4444ccca]f	chr6:167369041-167369303(-)$1	262	40	80	14.2667
======!!ccc"""ddddooooooddddccc22=======	chr1:2323503-2323748(+)$1	245	72	112	17.3765
dddccc"""eeeee[cccooooooccc]eeeee22ccc::	chr19:19644710-19644966(+)$1	256	49	89	13.8181
ee!!cccbb[ccc[cccrrrrrrrrrccc]ccc]bb22cc	chr1:27918618-27918909(-)$1	291	115	155	12.0533
ddddiiiiiiiii[bba[annnnna]a]bb]iiiiiiiii	chr19:2270579-2270845(+)$1	266	41	81	13.9488
gggg"""ccc[bb!!cccnnnnnccc22bb]cccgggggg	chr7:5569877-5570167(-)$1	290	83	123	14.8761
!!ccc[ggggggg[ddddnnnnndddd333ggggggg444	chr12:7036965-7037226(+)$1	261	203	243	15.3447
ggggg####bb[bb[cccnnnnnccc]bb]bb22gggggg	chr2:232573760-232573998(+)$1	238	3	43	13.0275
hhhhhaeeeee[a[ddddoooooodddd]aeeeee]a]hh	chr19:1104091-1104328(+)$1	237	9	49	14.3355
[ccc[ccc[ccc!!acccooooooccc]a333ccc]ccc]	chr7:23454751-23454988(-)$1	237	150	190	18.6355
##ccc[eeeee####cccnnnnnccc333eeeeeccc22d	chr11:65350526-65350804(+)$1	278	167	207	14.2512
ggggg!!dddd[a[bb[aooooooa]bb]a]dddd22ggg	chr4:174254962-174255293(-)$1	331	284	324	14.7347
g[ccc!!cccccc!!ddddllldddd22ccc]ccc333cc	chr12:109124822-109125061(-)$1	239	188	228	15.0085
""eeeee[ffffffddddoooooodddd333ffffff]ee	chr2:242255462-242255711(+)$1	249	58	98	13.9358
ggggggccc[ccc[cccccclllccc22ccc]cccccc]g	chr2:54197735-54197984(-)$1	249	94	134	14.6197
dd[eeeee[ggggggg[ccclllccc22ggggggg333ee	chr7:99949473-99949724(+)$1	251	82	122	13.7143
[dddd[bb[iiiiiiiiibblllbb]iiiiiiiii333bb	chr4:1873824-1874071(+)$1	247	115	155	12.4411
ccc!!a[a[============lll============22a]	chr7:5569705-5569980(-)$1	275	33	73	15.0710
accc$$$$$ccc!!ddddoooooodddd22ccc333ccc]	chr17:7476292-7476523(+)$1	231	5	45	16.0371
cc]cccccc[ccc[bb!!ccclllccc333bb]ccc]ccc	chr5:138629681-138629966(+)$1	285	215	255	12.5455
ffff[ggggggg[ccc[aooooooa]cccggggggg]fff	chr4:100870905-100871166(-)$1	261	92	132	15.8348
bbccc"""bb[a[eeeeeooooooeeeeea]bb333ccc]	chr17:7477067-7477321(+)$1	254	20	60	14.0480
ee[ccc[ccc!!bb!!bboooooobb22bbccc]ccc]ee	chr6:31865043-31865341(-)$1	298	103	143	14.3022
ffffff[agggggggcccooooooccc]ggggggg4444a	chr16:1728735-1729002(+)$1	267	63	103	16.9588
eeeee####ccc!!ddddoooooodddd22ccceeeeebb	chr16:85659237-85659472(+)$1	235	160	200	14.7945
d[cccdddd!!gggggggooooooggggggg]dddd22cc	chr6:166795818-166796114(-)$1	296	172	212	14.6188
fffff"""ccc[bb[cccoooooocccbb]ccc333ffff	chr3:195636310-195636556(-)$1	246	155	195	16.0676
iiiiiiiieeeee[ddddnnnnnddddeeeee22iiiiii	chr13:92001182-92001424(+)$1	242	95	135	13.0312
eeeeeggggggg!!bba[annnnna]a]bb22gggggggH	chr13:92000760-92001000(+)$1	240	190	230	12.6256

#otherMatches

#Seq PSSM
GUUACGAGGCUCUGCUGGAAAGGCGGCCGCCGCCUCUGUG	chr9:139720735-139720995(+)$1	260	175	215	14.8306
CCCUACUGCCUGGUGGAGGGGGAACUUGACCUCUGGGAGG	chr11:65190356-65190613(+)$1	257	157	197	15.1050
gggggccgcgcggggagcggcuggcgcgugcggggcggcc	chr14:100704552-100704804(-)$1	252	97	137	13.0433
cacuuugggagaugaggcaagcagaucaccugaggugggg	chr16:1427246-1427536(-)$1	290	249	289	12.6194
UGGUGGCUGAGCCCAGGCAUCCAAGCUGGGGCCAGCCCGA	chr7:1497387-1497627(-)$1	240	159	199	14.7489
CAGGAGUCGCCGCGCGCGCCCGUUCGCGCUGGGUAAUUUG	chr19:34287171-34287445(+)$1	274	227	267	13.6275
CCCAGACCAGGCUUGGUCCACUUAGGCCCUGCCGGGGAGG	chr16:89654682-89654972(+)$1	290	60	100	14.7623
GAAGGCUGGAGCAGGGGAAGCCAAUCCCGCUGGCCCGCCC	chr2:97534560-97534861(-)$1	301	203	243	15.4421
ccccgggcccgAGCCUGCUAGUGCGCCACGGCUCGGGUGA	chr16:447244-447525(+)$1	281	33	73	14.5348
GGCGGCCCGGGGACGAGCUGACGCGCCUCUUUAGUUCUCG	chr10:43902725-43902987(-)$1	262	169	209	17.5462
ccgccgccgccAGCCCGGAGCCUGAGCCggcggggcgggg	chr1:27022552-27022811(+)$1	259	145	185	12.9561
ggccgccgccgggcgccUUGAACUUGGAgccgggcgggcg	chr19:3360111-3360340(+)$1	229	112	152	11.5022
AGCCAGGACCGCGGCGCUGGGUAGAGCCGCCGCGCUUGCG	chr2:178128930-178129165(-)$1	235	18	58	13.3959
UGGGGGUCAGGGUGAGCAGGGGAUGCACUUUGGCCCUGGA	chr22:50037514-50037815(-)$1	301	50	90	17.1033
AUGGGGACCUGCGGGUGGGGUGAUGCUGACUGACGGAUGG	chr7:23454478-23454730(-)$1	252	40	80	12.4694
GAUCCUCAGAAGGUGUGGCUCUCCCCCUUCUGAGGACGCA	chr1:228330438-228330684(+)$1	246	113	153	13.2044
cgggggcucggcgggggcucggcgggggcucggcgggggc	chr21:46493851-46494128(+)$1	277	64	104	12.4991
ggcgcgggcggggagggcgggagagUCGUGGCUGGCUGCA	chr9:96929145-96929414(+)$1	269	82	122	16.3590
GGGGGAGGGCGCGACGGCACCGGGGUCCUGCGCCCGGGCC	chr14:102228219-102228449(+)$1	230	86	126	19.4030
GUCCAGCGCCUGAGGUCGGGGAGACGACCUGAGGAUCGGG	chr19:41770609-41770858(+)$1	249	164	204	13.2426
GCGUCUCAGUGGCGCAUUUACUAAUGGCUCCUGGGCCUCC	chr17:39845366-39845608(+)$1	242	176	216	12.7020
GGCACCUGCAGGACUGCGGAGAUCUCCUUGGCGCUGCGGG	chr2:47402654-47402926(-)$1	272	38	78	13.2670
GGGGGAGGGCGCGACGGCACCGGGGUCCUGCGCCCGGGCC	chr14:102228249-102228501(+)$1	252	56	96	19.4030
UGGCUGCAGGCGGACCCCGUGGAAGGGUUUCGCGAGGUAG	chr19:18547997-18548296(-)$1	299	125	165	15.9051
UUCUGGCGUGCCUUCGGGGGAUUCCGGCACUGCAGGGGCG	chr20:61557147-61557390(-)$1	243	84	124	12.8049
CCUGGGCACGCUCUGGGGUGACUCCUGGGAAGAAGUGGGU	chr6:167369041-167369303(-)$1	262	40	80	14.2667
CGCCUCGGGGUCGGGCCCGGGACGGGGUGCUGGGGGGUGC	chr1:2323503-2323748(+)$1	245	72	112	17.3765
UGCGCUAAGCCUUUGGGGAGGAUACUUGAAAGGGGAGUAA	chr19:19644710-19644966(+)$1	256	49	89	13.8181
GGGCUCUGUGGAUGACAGGCAGGGGGUGUGGUUGGCGAGG	chr1:27918618-27918909(-)$1	291	115	155	12.0533
GUUGUGGGGGAGCCCGCGGGGUCUCGGUCGAGCUUUCCCG	chr19:2270579-2270845(+)$1	266	41	81	13.9488
GUGCAGAGCCGCCGUCUGGGCCGCAGCGGGGGGCGCAUGG	chr7:5569877-5570167(-)$1	290	83	123	14.8761
uaggcgggcgcgggcggcggcgggucggaaccgcgccgag	chr12:7036965-7037226(+)$1	261	203	243	15.3447
GCGGGAGGAGAAGAGCCUGGCUGGGGGUCGUCGGCCCGCC	chr2:232573760-232573998(+)$1	238	3	43	13.0275
CCGCGCCUGGCCUGGCCGGGACCAUGGUGAGCUAGCGCCG	chr19:1104091-1104328(+)$1	237	9	49	14.3355
ACUGACGGACGGGACCUGGUGUUGCAGUGAAGCCGACUGA	chr7:23454751-23454988(-)$1	237	150	190	18.6355
AUCUCAGGGCCCGAGGCUGGAAUGGCAGAGGCCCGAGUAC	chr11:65350526-65350804(+)$1	278	167	207	14.2512
ggGUGUgcgccggggcgcgggcgggggcgcgggcggccgc	chr4:174254962-174255293(-)$1	331	284	324	14.7347
GACGAGGCUGCCCAGGGAAGGCUUUUAGGGGUCAGGGAUC	chr12:109124822-109125061(-)$1	239	188	228	15.0085
GCGGUGUGGGGGAGGGGCGGCCGAGCCCAGGCUCUUCGGC	chr2:242255462-242255711(+)$1	249	58	98	13.9358
Agcccccggagccgggcgggcgucccgagccgggcccgcg	chr2:54197735-54197984(-)$1	249	94	134	14.6197
uaagcgugggacccacgucagauuggugguGGGUCAUGCA	chr7:99949473-99949724(+)$1	251	82	122	13.7143
UGGGUACCCUGCUGGGGGGCUGCGCGCCCUCGGCGUCCGG	chr4:1873824-1874071(+)$1	247	115	155	12.4411
CGGGAGGCGCGCUCCGGGGGUGCCGCUCUCGGGGCGGGGG	chr7:5569705-5569980(-)$1	275	33	73	15.0710
GGGGGAGGGUCCGACUUGGAGGGGCGAGGGGGAAGACCCA	chr17:7476292-7476523(+)$1	231	5	45	16.0371
UCGCUCGAGGCCUGAGGGACAGACUGUACACUGGGGGCUU	chr5:138629681-138629966(+)$1	285	215	255	12.5455
gcgcggcggggggcgaacgggcggggucgccccugcggcg	chr4:100870905-100871166(-)$1	261	92	132	15.8348
CAUCCGGGCAACGCGAGGGGGGGGCUUCGGCUGGAGGGAG	chr17:7477067-7477321(+)$1	254	20	60	14.0480
GGGAGUGGGCACGGAGGCGCGCGUGCAGCCGCCGGCUGCC	chr6:31865043-31865341(-)$1	298	103	143	14.3022
AUGUGUUCGUGGGGGGUGUCUGGCCAUGCCCCCGCUCCUG	chr16:1728735-1729002(+)$1	267	63	103	16.9588
GGCUCAUUGCGGGUGGCUCUACGUGGUUGACCGGGGCCCU	chr16:85659237-85659472(+)$1	235	160	200	14.7945
GUGACAGUGGGCGCCCCUCAAGGCAGGGGUGACAUUGAGU	chr6:166795818-166796114(-)$1	296	172	212	14.6188
GGGGCAAGCGAGUGCGCUGGGCCGAGCCGGUCGGGGGCCC	chr3:195636310-195636556(-)$1	246	155	195	16.0676
GGUUGGGGGGGUUGCCGCGUCCGGCGGGGCCUGACUCUGA	chr13:92001182-92001424(+)$1	242	95	135	13.0312
GCCGCCUGCGCCCGGCCGCUUGCUGGGAGUGUGGCGCGGG	chr13:92000760-92001000(+)$1	240	190	230	12.6256

#DB
((((((((((.(.((((......)))).)..)))))...)	chr9:139720735-139720995(+)$1	1	175	215	14.8306
((((.((....(((.(((......))).)))....)))))	chr11:65190356-65190613(+)$1	1	157	197	15.1050
.((((((((.(.(.(.(((.....))).).).).))))))	chr14:100704552-100704804(-)$1	1	97	137	13.0433
(((((((((.(((..(.....)..))).))))))))))))	chr16:1427246-1427536(-)$1	1	249	289	12.6194
(.(.(((((.((((.(((......))).)))))))))).)	chr7:1497387-1497627(-)$1	1	159	199	14.7489
(..((((.(((..(((((......)))))..))).)))).	chr19:34287171-34287445(+)$1	1	227	267	13.6275
(((...((.(((..((((......))))..))).))..))	chr16:89654682-89654972(+)$1	1	60	100	14.7623
(..((((..(((..((((......)))))))))))..)))	chr2:97534560-97534861(-)$1	1	203	243	15.4421
(((((.((((((((((((....)))....)))))))))..	chr16:447244-447525(+)$1	1	33	73	14.5348
(((((..(((((((((((......).)))....)))))))	chr10:43902725-43902987(-)$1	1	169	209	17.5462
(((((.(((((.((.(((...))).)).))))))))))))	chr1:27022552-27022811(+)$1	1	145	185	12.9561
((((((((((.(((.((........)).))).))).))))	chr19:3360111-3360340(+)$1	1	112	152	11.5022
.((((((..(((((((((......)).))))))))))).)	chr2:178128930-178129165(-)$1	1	18	58	13.3959
(.(((((((((((..(((.....)))))))))))))).).	chr22:50037514-50037815(-)$1	1	50	90	17.1033
.((((..(((.(((((.((......)).)))..)).).))	chr7:23454478-23454730(-)$1	1	40	80	12.4694
(.(((((((((((.(.((....))))))))))))))).))	chr1:228330438-228330684(+)$1	1	113	153	13.2044
(.(((.(((.((.(((.(((....))).))).)).))).)	chr21:46493851-46494128(+)$1	1	64	104	12.4991
(((((((.(((..(.(((......))).)..))).)))).	chr9:96929145-96929414(+)$1	1	82	122	16.3590
((((..(((((((..(((......))).)))))))...))	chr14:102228219-102228449(+)$1	1	86	126	19.4030
.(((..(((((.((((((......)))))).)))..))..	chr19:41770609-41770858(+)$1	1	164	204	13.2426
(.(.(((((.(((.((((....))))))).)))))...).	chr17:39845366-39845608(+)$1	1	176	216	12.7020
(((.(((((((..(((.(((....))).)))..)))))))	chr2:47402654-47402926(-)$1	1	38	78	13.2670
((((..(((((((..(((......))).)))))))...))	chr14:102228249-102228501(+)$1	1	56	96	19.4030
(.(((((..(((((.(((......))).)))))...))))	chr19:18547997-18548296(-)$1	1	125	165	15.9051
(((((..(((((...(((....))))))))..))))))))	chr20:61557147-61557390(-)$1	1	84	124	12.8049
(((((.(.((((((.(((.....))).)))....)))).)	chr6:167369041-167369303(-)$1	1	40	80	14.2667
((((((..(((...((((......)))))))..)))))))	chr1:2323503-2323748(+)$1	1	72	112	17.3765
)))(((...(((((.(((......))).)))))..)))..	chr19:19644710-19644966(+)$1	1	49	89	13.8181
((..(((((.(((.(((.........))).))).))..))	chr1:27918618-27918909(-)$1	1	115	155	12.0533
))))(((((((((.(((.(.....).).)).)))))))))	chr19:2270579-2270845(+)$1	1	41	81	13.9488
((((...(((.((..(((.....)))..)).)))))))))	chr7:5569877-5570167(-)$1	1	83	123	14.8761
..(((.(((((((.((((.....))))...)))))))...	chr12:7036965-7037226(+)$1	1	203	243	15.3447
(((((....((.((.(((.....))).)).))..))))))	chr2:232573760-232573998(+)$1	1	3	43	13.0275
(((((((((((.(.((((......)))).)))))).).))	chr19:1104091-1104328(+)$1	1	9	49	14.3355
.(((.(((.(((..((((......))).)...))).))).	chr7:23454751-23454988(-)$1	1	150	190	18.6355
..(((.(((((....(((.....)))...))))))))..)	chr11:65350526-65350804(+)$1	1	167	207	14.2512
(((((..((((.(.((.(......).)).).))))..)))	chr4:174254962-174255293(-)$1	1	284	324	14.7347
(.(((..((((((..((((...))))..))).)))...))	chr12:109124822-109125061(-)$1	1	188	228	15.0085
..(((((.((((((((((......))))...)))))).))	chr2:242255462-242255711(+)$1	1	58	98	13.9358
(((((((((.(((.((((((...)))..))).)))))).)	chr2:54197735-54197984(-)$1	1	94	134	14.6197
((.(((((.(((((((.(((...)))..)))))))...))	chr7:99949473-99949724(+)$1	1	82	122	13.7143
.((((.((.(((((((((((...)).)))))))))...))	chr4:1873824-1874071(+)$1	1	115	155	12.4411
(((..(.(.((((((((((((...))))))))))))..).	chr7:5569705-5569980(-)$1	1	33	73	15.0710
((((.....(((..((((......))))..)))...))).	chr17:7476292-7476523(+)$1	1	5	45	16.0371
)).)))(((.(((.((..(((...)))...)).))).)))	chr5:138629681-138629966(+)$1	1	215	255	12.5455
((((.(((((((.(((.(......).)))))))))).)))	chr4:100870905-100871166(-)$1	1	92	132	15.8348
(((((...((.(.(((((......)))))).))...))).	chr17:7477067-7477321(+)$1	1	20	60	14.0480
((.(((.(((..((..((......))..))))).))).))	chr6:31865043-31865341(-)$1	1	103	143	14.3022
((((((.(((((((((((......))).)))))))....)	chr16:1728735-1729002(+)$1	1	63	103	16.9588
(((((....(((..((((......))))..))))))))))	chr16:85659237-85659472(+)$1	1	160	200	14.7945
(.(((((((..(((((((......))))))).))))..))	chr6:166795818-166796114(-)$1	1	172	212	14.6188
(((((...(((.((.(((......))))).)))...))))	chr3:195636310-195636556(-)$1	1	155	195	16.0676
(((((((((((((.((((.....)))))))))..))))))	chr13:92001182-92001424(+)$1	1	95	135	13.0312
)))))(((((((..(((.(.....).).))..))))))))	chr13:92000760-92001000(+)$1	1	190	230	12.6256

#PSSM
g : 0.20	d : 0.12	c : 0.09	" : 0.07	a : 0.07	= : 0.07	f : 0.07	e : 0.07	b : 0.05	[ : 0.05	i : 0.03	! : 0.01	h : 0.01	# : 0.01	
g : 0.16	d : 0.14	[ : 0.14	c : 0.11	= : 0.07	f : 0.07	e : 0.07	! : 0.05	h : 0.03	i : 0.03	b : 0.03	# : 0.01	" : 0.01	
c : 0.20	g : 0.16	d : 0.12	= : 0.11	e : 0.07	f : 0.07	! : 0.05	h : 0.03	i : 0.03	a : 0.03	[ : 0.03	b : 0.01	] : 0.01	
c : 0.22	g : 0.16	d : 0.14	= : 0.11	e : 0.09	f : 0.07	[ : 0.05	h : 0.03	i : 0.03	! : 0.03	" : 0.01	
c : 0.18	g : 0.12	e : 0.12	d : 0.11	= : 0.11	! : 0.07	[ : 0.05	i : 0.05	f : 0.05	h : 0.03	" : 0.03	$ : 0.01	
! : 0.14	[ : 0.12	e : 0.11	d : 0.09	c : 0.09	" : 0.07	= : 0.07	g : 0.07	i : 0.05	# : 0.03	a : 0.03	b : 0.01	h : 0.01	$ : 0.01	f : 0.01	
e : 0.16	! : 0.11	g : 0.11	d : 0.09	c : 0.09	b : 0.07	i : 0.07	" : 0.07	= : 0.05	[ : 0.05	# : 0.03	h : 0.01	a : 0.01	$ : 0.01	
e : 0.14	c : 0.14	g : 0.12	b : 0.09	i : 0.07	[ : 0.07	! : 0.07	# : 0.05	" : 0.05	= : 0.03	d : 0.03	a : 0.03	h : 0.01	$ : 0.01	
c : 0.24	e : 0.14	g : 0.14	[ : 0.09	# : 0.05	i : 0.05	! : 0.05	b : 0.05	= : 0.03	d : 0.03	h : 0.01	" : 0.01	f : 0.01	$ : 0.01	
c : 0.27	g : 0.18	e : 0.14	[ : 0.14	i : 0.05	= : 0.05	b : 0.03	# : 0.01	a : 0.01	d : 0.01	f : 0.01	! : 0.01	
c : 0.31	g : 0.18	e : 0.12	[ : 0.09	i : 0.05	= : 0.05	d : 0.03	b : 0.03	! : 0.03	# : 0.01	a : 0.01	f : 0.01	
c : 0.25	g : 0.18	[ : 0.12	! : 0.07	e : 0.07	i : 0.05	= : 0.05	b : 0.05	a : 0.03	d : 0.01	" : 0.01	# : 0.01	f : 0.01	
c : 0.16	! : 0.16	g : 0.14	b : 0.11	[ : 0.07	a : 0.05	i : 0.05	= : 0.05	e : 0.05	f : 0.03	" : 0.03	d : 0.01	# : 0.01	
! : 0.22	[ : 0.20	c : 0.12	g : 0.09	e : 0.07	b : 0.07	d : 0.03	i : 0.03	f : 0.03	" : 0.03	a : 0.01	# : 0.01	= : 0.01	
d : 0.20	[ : 0.18	! : 0.12	c : 0.12	g : 0.07	b : 0.07	a : 0.05	e : 0.03	i : 0.03	f : 0.01	" : 0.01	# : 0.01	= : 0.01	
c : 0.46	d : 0.22	b : 0.09	g : 0.05	[ : 0.03	e : 0.03	a : 0.01	f : 0.01	i : 0.01	= : 0.01	! : 0.01	
c : 0.40	d : 0.22	[ : 0.11	b : 0.07	e : 0.03	a : 0.03	n : 0.01	f : 0.01	i : 0.01	= : 0.01	! : 0.01	g : 0.01	
c : 0.42	d : 0.20	b : 0.07	a : 0.05	e : 0.03	[ : 0.03	o : 0.01	n : 0.01	q : 0.01	f : 0.01	r : 0.01	i : 0.01	= : 0.01	! : 0.01	g : 0.01	
o : 0.49	n : 0.14	c : 0.11	m : 0.07	b : 0.03	a : 0.03	l : 0.01	q : 0.01	r : 0.01	d : 0.01	= : 0.01	
o : 0.51	n : 0.20	c : 0.09	m : 0.07	l : 0.03	q : 0.01	r : 0.01	b : 0.01	= : 0.01	
o : 0.51	n : 0.20	m : 0.11	l : 0.09	q : 0.01	r : 0.01	= : 0.01	c : 0.01	
o : 0.51	n : 0.18	m : 0.11	l : 0.11	a : 0.01	c : 0.01	q : 0.01	r : 0.01	
o : 0.51	n : 0.18	l : 0.09	c : 0.05	m : 0.03	d : 0.03	2 : 0.01	q : 0.01	b : 0.01	r : 0.01	
o : 0.49	c : 0.18	d : 0.09	n : 0.05	b : 0.03	m : 0.03	l : 0.03	2 : 0.01	q : 0.01	r : 0.01	
c : 0.44	d : 0.22	a : 0.11	b : 0.05	e : 0.03	] : 0.01	q : 0.01	o : 0.01	f : 0.01	r : 0.01	= : 0.01	g : 0.01	
c : 0.40	d : 0.22	] : 0.11	b : 0.09	e : 0.05	= : 0.03	4 : 0.01	f : 0.01	r : 0.01	g : 0.01	
c : 0.35	d : 0.18	2 : 0.09	b : 0.07	e : 0.05	] : 0.05	= : 0.05	a : 0.03	4 : 0.01	f : 0.01	3 : 0.01	i : 0.01	g : 0.01	
] : 0.35	d : 0.12	c : 0.09	2 : 0.09	e : 0.07	= : 0.05	3 : 0.05	b : 0.05	g : 0.03	4 : 0.01	f : 0.01	i : 0.01	
c : 0.25	e : 0.12	g : 0.11	b : 0.11	a : 0.07	3 : 0.07	2 : 0.05	= : 0.05	i : 0.03	] : 0.03	d : 0.01	4 : 0.01	f : 0.01	
c : 0.18	g : 0.12	2 : 0.11	e : 0.11	] : 0.09	b : 0.07	3 : 0.07	i : 0.05	= : 0.05	a : 0.05	d : 0.01	4 : 0.01	f : 0.01	
c : 0.27	g : 0.14	e : 0.12	2 : 0.09	] : 0.09	i : 0.05	= : 0.05	4 : 0.03	b : 0.03	3 : 0.03	a : 0.01	d : 0.01	
c : 0.18	e : 0.14	g : 0.12	] : 0.11	2 : 0.09	i : 0.07	4 : 0.05	d : 0.05	= : 0.05	b : 0.05	3 : 0.01	f : 0.01	
c : 0.25	g : 0.16	e : 0.14	2 : 0.09	i : 0.07	4 : 0.05	d : 0.05	= : 0.05	b : 0.03	a : 0.01	f : 0.01	] : 0.01	
g : 0.20	c : 0.16	e : 0.11	= : 0.09	] : 0.07	i : 0.07	3 : 0.07	d : 0.05	2 : 0.05	4 : 0.03	b : 0.03	f : 0.01	
g : 0.22	c : 0.14	e : 0.09	i : 0.09	= : 0.09	d : 0.07	3 : 0.07	] : 0.05	b : 0.05	2 : 0.03	4 : 0.01	h : 0.01	f : 0.01	
3 : 0.18	g : 0.14	c : 0.12	= : 0.09	i : 0.07	d : 0.07	] : 0.07	e : 0.05	b : 0.05	2 : 0.05	h : 0.01	f : 0.01	4 : 0.01	
c : 0.16	3 : 0.12	g : 0.12	2 : 0.11	i : 0.07	= : 0.07	e : 0.05	d : 0.05	a : 0.05	b : 0.03	f : 0.03	] : 0.03	h : 0.01	4 : 0.01	
c : 0.14	3 : 0.12	g : 0.12	] : 0.11	d : 0.09	2 : 0.09	i : 0.05	= : 0.05	a : 0.03	e : 0.03	4 : 0.03	f : 0.03	h : 0.01	b : 0.01	
g : 0.16	c : 0.14	d : 0.09	] : 0.09	b : 0.07	e : 0.07	= : 0.05	a : 0.05	3 : 0.03	h : 0.03	2 : 0.03	i : 0.03	4 : 0.03	f : 0.03	: : 0.01	
g : 0.16	] : 0.11	c : 0.11	b : 0.09	d : 0.07	e : 0.07	f : 0.07	= : 0.05	h : 0.03	a : 0.03	3 : 0.03	2 : 0.03	i : 0.03	: : 0.01	4 : 0.01	H : 0.01	

#score	784.8026870465591
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_CDS_m3_run1.txt

#BEAR
d####eeeeevvvvvvvvvvvvveeeee4	chr9:117062284-117062503(+)$1	219	178	207	23.3641
:iiiiiiiiiuuuuuuuuuuuuiiiiiii	chr6:32943766-32944033(+)$1	267	219	248	23.7090
::gggggggvvvvvvvvvvvvvggggggg	chr6:4032699-4033022(+)$1	323	110	139	21.4410
a!!bbaddddxxxxxxxxxxxxxxxdddd	chr20:43029906-43030125(+)$1	219	174	203	18.4353
!iiiiiiiiivvvvvvvvvvvvviiiiii	chr1:39851009-39851286(+)$1	277	39	68	23.8126
gggggggyyyyyyyyyyyyyyyygggggg	chr20:39985755-39986138(+)$1	383	284	313	23.1315
ggggggggggwwwwwwwwwwwwwwggggg	chr10:21823472-21823710(+)$1	238	43	72	23.6542
ccc[ffffffuuuuuuuuuuuuffffff]	chr17:79953733-79954003(+)$1	270	234	263	23.1495
!!eeeeexxxxxxxxxxxxxxxeeeeegg	chr14:102547952-102548257(-)$1	305	9	38	19.3616
ee!!bbyyyyyyyyyyyyyyyybb22eee	chr6:111136184-111136425(-)$1	241	14	43	21.3871
!dddd!!bb[attttttttttta]bb22d	chr19:49611466-49611690(+)$1	224	37	66	22.3110
fffff"""ccctttttttttttccc22ff	chr17:37646750-37647052(+)$1	302	107	136	22.0976
fff"""bbyyyyyyyyyyyyyyyybb333	chr19:12845209-12845531(-)$1	322	263	292	22.1462
ddddgggggggtttttttttttggggggg	chr16:57481380-57481705(+)$1	325	176	205	21.9911
+dddd!!bbvvvvvvvvvvvvvbb22ddd	chr2:232325146-232325358(-)$1	212	115	144	21.6808
eeee[ddddwwwwwwwwwwwwwwdddd]e	chr9:139756683-139756919(-)$1	236	30	59	23.0392
====="""ccctttttttttttccc====	chr5:137498742-137499044(-)$1	302	245	274	23.5176
e[gggggggwwwwwwwwwwwwwwgggggg	chr9:117069931-117070148(+)$1	217	152	181	23.9529
$eeeee[bbwwwwwwwwwwwwwwbb]eee	chr20:39792368-39792573(+)$1	205	122	151	23.0274
=======!!avvvvvvvvvvvvva22===	chrX:41193682-41193964(+)$1	282	169	198	24.0048
fffff[eeeeettttttttttteeeeeff	chr14:24033458-24033663(-)$1	205	83	112	22.1965
iiii!!eeeeettttttttttteeeee33	chr4:83348241-83348501(-)$1	260	149	178	23.2785
eeeee[dddduuuuuuuuuuuuddddeee	chr17:35620484-35620731(-)$1	247	178	207	23.7785
d[a[ffffffxxxxxxxxxxxxxxxffff	chr13:52513090-52513334(-)$1	244	165	194	18.4775
===[ccc[bbuuuuuuuuuuuubb]ccc]	chrX:16871740-16872067(-)$1	327	46	75	24.2429
==========uuuuuuuuuuuu=======	chr19:1111485-1111779(-)$1	294	106	135	25.0250
[ccc!!a[bbuuuuuuuuuuuubb]a22c	chr17:55334031-55334237(+)$1	206	100	129	24.1981
d[dddd[cccuuuuuuuuuuuuccc]ddd	chr16:89837992-89838244(-)$1	252	165	194	23.9225
[ggggggg[bbtttttttttttbb]gggg	chr16:31202270-31202520(+)$1	250	198	227	22.9355
iiiii"""bbuuuuuuuuuuuubb22iii	chr16:29912677-29912921(+)$1	244	91	120	24.2560
!a!!ffffffuuuuuuuuuuuuffffff4	chr6:32157535-32157786(-)$1	251	18	47	23.4418
beeeee:cccuuuuuuuuuuuuccc:::b	chr17:36863964-36864230(+)$1	266	22	51	19.7827
e[eeeeexxxxxxxxxxxxxxxeeeeeee	chr16:88725020-88725300(-)$1	280	246	275	19.0955
bb[bbddddyyyyyyyyyyyyyyyydddd	chr17:46131917-46132228(+)$1	311	72	101	21.4404
ddffffffbbuuuuuuuuuuuubb]ffff	chr17:42266577-42266904(+)$1	327	199	228	23.0265
:ffffff[bbuuuuuuuuuuuubbfffff	chr16:89623223-89623474(+)$1	251	183	212	22.3770
hhhhh[dddduuuuuuuuuuuudddd]hh	chr17:34171853-34172125(+)$1	272	186	215	22.6449
FFFFFeeeeeuuuuuuuuuuuueeeee:c	chr2:32688188-32688452(+)$1	264	163	192	21.0236
""dddd[cccvvvvvvvvvvvvvcccddd	chr7:73021397-73021648(-)$1	251	98	127	22.9864
hhhhhhhh[auuuuuuuuuuuua]hhhhh	chr17:34171423-34171720(+)$1	297	240	269	22.3192
bb[dddd[ccctttttttttttcccdddd	chr6:33179040-33179267(+)$1	227	151	180	21.8985
[eeeeeddddxxxxxxxxxxxxxxxdddd	chr12:6690214-6690439(-)$1	225	9	38	18.7549
d####eeeeeuuuuuuuuuuuueeeee33	chr17:2203216-2203498(-)$1	282	36	65	24.4646
:dddd!!bb[attttttttttta]bb22d	chr19:49611430-49611666(+)$1	236	73	102	21.3372
f[a[eeeee[attttttttttta]eeeee	chr10:101379910-101380229(-)$1	319	206	235	23.5409
eeee[cccxxxxxxxxxxxxxxxccc]ee	chr17:40936907-40937227(+)$1	320	273	302	19.3548
ffff[eeeeewwwwwwwwwwwwwweeeee	chr11:47772623-47772882(-)$1	259	93	122	23.2336
!!ccc[ddddvvvvvvvvvvvvvdddd33	chr19:39439149-39439423(-)$1	274	140	169	23.3174
eee:eeeeevvvvvvvvvvvvveeeeecc	chr6:33179565-33179821(+)$1	256	64	93	22.0407
eee!!eeeeexxxxxxxxxxxxxxxeeee	chr9:117015065-117015302(+)$1	237	175	204	19.5118
%%%%%%dddduuuuuuuuuuuudddd333	chr1:62237093-62237389(+)$1	296	35	64	20.2189
####gggggggtttttttttttggggggg	chr19:42790753-42791030(+)$1	277	157	186	22.5580
dddd!!bb[bbtttttttttttbbbb22d	chr11:372594-372824(+)$1	230	107	136	21.1461
a[bbeeeeeavvvvvvvvvvvvva]eeee	chr16:18847595-18847865(-)$1	270	12	41	23.3869

#otherMatches

#Seq PSSM
auuuauucauucaacaaauauuuauggag	chr9:117062284-117062503(+)$1	219	178	207	23.3641
UGGGGAAGAGAAUCAAACUACACUUUUUU	chr6:32943766-32944033(+)$1	267	219	248	23.7090
AAGUUUGUCUCCAAAACCACGUGAUAAAU	chr6:4032699-4033022(+)$1	323	110	139	21.4410
CACCACCCUGGAAUUUGAGAAUGUGCAGG	chr20:43029906-43030125(+)$1	219	174	203	18.4353
UUUUAGAUAGAUCUGUUUUUUUCCUGUCU	chr1:39851009-39851286(+)$1	277	39	68	23.8126
AGACUGGACACACCAGGGCAUCACCAGUC	chr20:39985755-39986138(+)$1	383	284	313	23.1315
GGGGAAGCACUAAUCGGCUUGCAUGUGUU	chr10:21823472-21823710(+)$1	238	43	72	23.6542
GAGUCUAUUUAGCUAAAAAAAAAAGUGGU	chr17:79953733-79954003(+)$1	270	234	263	23.1495
UGUCUUGAAAGCAGAUAGAAACCAAGAGU	chr14:102547952-102548257(-)$1	305	9	38	19.3616
GCGGGGGGAGGAGGAGGAGGGACUGAGCG	chr6:111136184-111136425(-)$1	241	14	43	21.3871
accgugaccgcgagcacaaacggggggag	chr19:49611466-49611690(+)$1	224	37	66	22.3110
GAGGACACGUCACUUACUCACAGACCUUC	chr17:37646750-37647052(+)$1	302	107	136	22.0976
GUUCAAGCGGAAGAUGGAGGAGGAGCAGC	chr19:12845209-12845531(-)$1	322	263	292	22.1462
GGUUCGACGGUGGGGGGAAGAGGCCGUUG	chr16:57481380-57481705(+)$1	325	176	205	21.9911
AAGGAAAUGGCCAAACAGAAAGCAGCUCC	chr2:232325146-232325358(-)$1	212	115	144	21.6808
CCCCCCUUCCCUGGGAAGAUGUUGAAGAG	chr9:139756683-139756919(-)$1	236	30	59	23.0392
UCUUUGAGGCCAAGGCAGUGAAGGUGAGG	chr5:137498742-137499044(-)$1	302	245	274	23.5176
ACCAGGCUGUCUGCCUCUAUCCCCAGCCU	chr9:117069931-117070148(+)$1	217	152	181	23.9529
AGGCCCACCCAGCUUCUUCCCCAGGAGGG	chr20:39792368-39792573(+)$1	205	122	151	23.0274
GAAUCCCGACUGAUUAGUGACCUGGGGGG	chrX:41193682-41193964(+)$1	282	169	198	24.0048
UCUUGGUCGCUUCCUACUCAACAGUGACA	chr14:24033458-24033663(-)$1	205	83	112	22.1965
CGUGGCCGAGGUGAGACUUAAUUCUUGAA	chr4:83348241-83348501(-)$1	260	149	178	23.2785
UACAUAGAACAUUUUUCAUUCAGUUCAUG	chr17:35620484-35620731(-)$1	247	178	207	23.7785
UGCAAACUGUGUAAAGCUCAUAAAAGCAG	chr13:52513090-52513334(-)$1	244	165	194	18.4775
aaaaaaUCAGUCUCUUAUAGCCCUUGUUC	chrX:16871740-16872067(-)$1	327	46	75	24.2429
GGUCCAGGGAAAGCCAGCCUCCUCCCUGG	chr19:1111485-1111779(-)$1	294	106	135	25.0250
CGGGCAGCGCCAACGACUCCCAGCACGAC	chr17:55334031-55334237(+)$1	206	100	129	24.1981
GUAGGGGCUCAGAACAAAGCAGGGGGUCU	chr16:89837992-89838244(-)$1	252	165	194	23.9225
GAACAGAGGCCAUAGGAUAACAGGGUUUU	chr16:31202270-31202520(+)$1	250	198	227	22.9355
GGCUGGGAUGGGUAGAGUGAGGCGGGCAG	chr16:29912677-29912921(+)$1	244	91	120	24.2560
GCGAGUUUGGGGGGAGAAGUAACCAGGCG	chr6:32157535-32157786(-)$1	251	18	47	23.4418
CAGCUGAGGCUACCCCCACACUGCCCCAG	chr17:36863964-36864230(+)$1	266	22	51	19.7827
UGUGUGGACUGACGACUAAACACCACAGU	chr16:88725020-88725300(-)$1	280	246	275	19.0955
CUGCAGCCUAGGUAACAAGUUUGGGGGGC	chr17:46131917-46132228(+)$1	311	72	101	21.4404
AGGCCUGCCCAAAAGACAAGCAGGUGCAG	chr17:42266577-42266904(+)$1	327	199	228	23.0265
ACGCCCAGAGGGAGAAACAGGACUUGGGC	chr16:89623223-89623474(+)$1	251	183	212	22.3770
AAGGUGAGUAUUAGAAUGUGUUUAUUAAC	chr17:34171853-34172125(+)$1	272	186	215	22.6449
UAGCUUUGCAGUCUCUCUCUCAUGCAAUG	chr2:32688188-32688452(+)$1	264	163	192	21.0236
CCUCGGGCCCUCCAUUCAGUCCCGGGCCG	chr7:73021397-73021648(-)$1	251	98	127	22.9864
gcuaugguggggacagaggcggcggcuau	chr17:34171423-34171720(+)$1	297	240	269	22.3192
CUCUGGGAGGGGGAACGCUGGGCCCCCCA	chr6:33179040-33179267(+)$1	227	151	180	21.8985
UACUAAAGACAAAUGUGUAAGUCCAGUCU	chr12:6690214-6690439(-)$1	225	9	38	18.7549
AGACAGGGCUGAGAUAGAAAAGAGCCCAG	chr17:2203216-2203498(-)$1	282	36	65	24.4646
accgugaccgcgagcacaaacggggggag	chr19:49611430-49611666(+)$1	236	73	102	21.3372
ggggAGUCGGCGCUGCUGGACGGGUGGCU	chr10:101379910-101380229(-)$1	319	206	235	23.5409
AUCCGCACGGAUAAGAACGAGAGGUGGGG	chr17:40936907-40937227(+)$1	320	273	302	19.3548
UAUUAUUAUUGGAAUACACAAACAAAUGA	chr11:47772623-47772882(-)$1	259	93	122	23.2336
AACGGCUGGGCCAUAGAAAAGAACCUAAC	chr19:39439149-39439423(-)$1	274	140	169	23.3174
UCUGACACCGGAGGACCUGAUGGGUGUGG	chr6:33179565-33179821(+)$1	256	64	93	22.0407
UCAAACCACUGUCAGAUAAGGGUUAGGUg	chr9:117015065-117015302(+)$1	237	175	204	19.5118
AAAUAUUGGCCAUUAAUCACACGCCAUUG	chr1:62237093-62237389(+)$1	296	35	64	20.2189
UCCUUUCCACAGUGUGGACGAAUGUGGAA	chr19:42790753-42791030(+)$1	277	157	186	22.5580
CUGGGAGGCUGCCACUGAACUUCACCCAU	chr11:372594-372824(+)$1	230	107	136	21.1461
UAUUCUGAGCACACCCAACUACAGACUCA	chr16:18847595-18847865(-)$1	270	12	41	23.3869

#DB
(....(((((.............))))).	chr9:117062284-117062503(+)$1	1	178	207	23.3641
.(((((((((............)))))))	chr6:32943766-32944033(+)$1	1	219	248	23.7090
..(((((((.............)))))))	chr6:4032699-4033022(+)$1	1	110	139	21.4410
(..(((((((...............))))	chr20:43029906-43030125(+)$1	1	174	203	18.4353
.(((((((((.............))))))	chr1:39851009-39851286(+)$1	1	39	68	23.8126
(((((((................))))))	chr20:39985755-39986138(+)$1	1	284	313	23.1315
((((((((((..............)))))	chr10:21823472-21823710(+)$1	1	43	72	23.6542
(((.((((((............)))))).	chr17:79953733-79954003(+)$1	1	234	263	23.1495
..(((((...............)))))))	chr14:102547952-102548257(-)$1	1	9	38	19.3616
((..((................))..)))	chr6:111136184-111136425(-)$1	1	14	43	21.3871
.((((..((.(...........).))..)	chr19:49611466-49611690(+)$1	1	37	66	22.3110
(((((...(((...........)))..))	chr17:37646750-37647052(+)$1	1	107	136	22.0976
(((...((................))...	chr19:12845209-12845531(-)$1	1	263	292	22.1462
))))(((((((...........)))))))	chr16:57481380-57481705(+)$1	1	176	205	21.9911
.((((..((.............))..)))	chr2:232325146-232325358(-)$1	1	115	144	21.6808
((((.((((..............)))).)	chr9:139756683-139756919(-)$1	1	30	59	23.0392
(((((...(((...........)))))))	chr5:137498742-137499044(-)$1	1	245	274	23.5176
(.(((((((..............))))))	chr9:117069931-117070148(+)$1	1	152	181	23.9529
.(((((.((..............)).)))	chr20:39792368-39792573(+)$1	1	122	151	23.0274
(((((((..(.............)..)))	chrX:41193682-41193964(+)$1	1	169	198	24.0048
(((((.(((((...........)))))))	chr14:24033458-24033663(-)$1	1	83	112	22.1965
((((..(((((...........)))))..	chr4:83348241-83348501(-)$1	1	149	178	23.2785
(((((.((((............)))))))	chr17:35620484-35620731(-)$1	1	178	207	23.7785
(.(.((((((...............))))	chr13:52513090-52513334(-)$1	1	165	194	18.4775
(((.(((.((............)).))).	chrX:16871740-16872067(-)$1	1	46	75	24.2429
((((((((((............)))))))	chr19:1111485-1111779(-)$1	1	106	135	25.0250
.(((..(.((............)).)..)	chr17:55334031-55334237(+)$1	1	100	129	24.1981
(.((((.(((............))).)))	chr16:89837992-89838244(-)$1	1	165	194	23.9225
.(((((((.((...........)).))))	chr16:31202270-31202520(+)$1	1	198	227	22.9355
(((((...((............))..)))	chr16:29912677-29912921(+)$1	1	91	120	24.2560
.(..((((((............)))))).	chr6:32157535-32157786(-)$1	1	18	47	23.4418
)))))).(((............)))...(	chr17:36863964-36864230(+)$1	1	22	51	19.7827
(.(((((...............)))))))	chr16:88725020-88725300(-)$1	1	246	275	19.0955
((.((((((................))))	chr17:46131917-46132228(+)$1	1	72	101	21.4404
))((((((((............)).))))	chr17:42266577-42266904(+)$1	1	199	228	23.0265
.((((((.((............)))))))	chr16:89623223-89623474(+)$1	1	183	212	22.3770
(((((.((((............)))).))	chr17:34171853-34172125(+)$1	1	186	215	22.6449
((((((((((............))))).(	chr2:32688188-32688452(+)$1	1	163	192	21.0236
..((((.(((.............))))))	chr7:73021397-73021648(-)$1	1	98	127	22.9864
((((((((.(............).)))))	chr17:34171423-34171720(+)$1	1	240	269	22.3192
((.((((.(((...........)))))))	chr6:33179040-33179267(+)$1	1	151	180	21.8985
.(((((((((...............))))	chr12:6690214-6690439(-)$1	1	9	38	18.7549
(....(((((............)))))..	chr17:2203216-2203498(-)$1	1	36	65	24.4646
.((((..((.(...........).))..)	chr19:49611430-49611666(+)$1	1	73	102	21.3372
(.(.(((((.(...........).)))))	chr10:101379910-101380229(-)$1	1	206	235	23.5409
((((.(((...............))).))	chr17:40936907-40937227(+)$1	1	273	302	19.3548
((((.(((((..............)))))	chr11:47772623-47772882(-)$1	1	93	122	23.2336
..(((.((((.............))))..	chr19:39439149-39439423(-)$1	1	140	169	23.3174
))).(((((.............)))))((	chr6:33179565-33179821(+)$1	1	64	93	22.0407
(((..(((((...............))))	chr9:117015065-117015302(+)$1	1	175	204	19.5118
......((((............))))...	chr1:62237093-62237389(+)$1	1	35	64	20.2189
....(((((((...........)))))))	chr19:42790753-42791030(+)$1	1	157	186	22.5580
((((..((.((...........))))..)	chr11:372594-372824(+)$1	1	107	136	21.1461
(.((((((((.............).))))	chr16:18847595-18847865(-)$1	1	12	41	23.3869

#PSSM
e : 0.14	d : 0.12	! : 0.09	f : 0.09	: : 0.07	= : 0.07	[ : 0.05	b : 0.05	a : 0.03	g : 0.03	i : 0.03	h : 0.03	c : 0.01	+ : 0.01	$ : 0.01	F : 0.01	" : 0.01	% : 0.01	# : 0.01	
e : 0.16	d : 0.11	[ : 0.11	f : 0.09	i : 0.07	= : 0.07	# : 0.05	! : 0.05	g : 0.05	c : 0.03	b : 0.03	h : 0.03	: : 0.01	a : 0.01	F : 0.01	" : 0.01	% : 0.01	
e : 0.18	d : 0.12	f : 0.11	g : 0.09	i : 0.07	= : 0.07	# : 0.05	! : 0.05	c : 0.05	a : 0.03	[ : 0.03	h : 0.03	F : 0.01	% : 0.01	b : 0.01	
e : 0.14	d : 0.14	g : 0.09	f : 0.09	i : 0.07	[ : 0.07	# : 0.05	b : 0.05	! : 0.05	= : 0.05	c : 0.03	h : 0.03	" : 0.01	F : 0.01	: : 0.01	% : 0.01	
e : 0.16	g : 0.12	f : 0.12	d : 0.11	! : 0.07	i : 0.05	b : 0.05	[ : 0.05	= : 0.05	# : 0.03	c : 0.03	h : 0.03	" : 0.01	F : 0.01	% : 0.01	
e : 0.24	g : 0.12	! : 0.11	f : 0.09	d : 0.09	" : 0.07	[ : 0.07	i : 0.03	= : 0.03	c : 0.03	a : 0.01	b : 0.01	h : 0.01	% : 0.01	
e : 0.22	d : 0.16	g : 0.12	f : 0.09	! : 0.05	" : 0.05	[ : 0.05	i : 0.03	b : 0.03	= : 0.03	c : 0.03	y : 0.01	a : 0.01	: : 0.01	h : 0.01	
e : 0.18	d : 0.14	g : 0.11	b : 0.11	f : 0.07	[ : 0.07	c : 0.07	" : 0.05	i : 0.03	y : 0.03	x : 0.03	! : 0.01	= : 0.01	h : 0.01	
e : 0.18	b : 0.16	d : 0.14	c : 0.11	g : 0.09	y : 0.05	f : 0.05	x : 0.05	[ : 0.05	i : 0.03	! : 0.01	= : 0.01	
e : 0.12	b : 0.12	d : 0.11	c : 0.11	y : 0.07	v : 0.05	g : 0.05	f : 0.05	x : 0.05	[ : 0.05	w : 0.05	a : 0.05	i : 0.03	= : 0.01	
u : 0.31	v : 0.16	x : 0.12	w : 0.09	y : 0.07	a : 0.05	c : 0.05	g : 0.03	e : 0.03	b : 0.03	
u : 0.31	t : 0.22	v : 0.16	x : 0.12	w : 0.09	y : 0.07	
u : 0.31	t : 0.22	v : 0.16	x : 0.12	w : 0.09	y : 0.07	
u : 0.31	t : 0.22	v : 0.16	x : 0.12	w : 0.09	y : 0.07	
u : 0.31	t : 0.22	v : 0.16	x : 0.12	w : 0.09	y : 0.07	
u : 0.31	t : 0.22	v : 0.16	x : 0.12	w : 0.09	y : 0.07	
u : 0.31	t : 0.22	v : 0.16	x : 0.12	w : 0.09	y : 0.07	
u : 0.31	t : 0.22	v : 0.16	x : 0.12	w : 0.09	y : 0.07	
u : 0.31	t : 0.22	v : 0.16	x : 0.12	w : 0.09	y : 0.07	
u : 0.31	t : 0.22	v : 0.16	x : 0.12	w : 0.09	y : 0.07	
u : 0.31	t : 0.22	v : 0.16	x : 0.12	w : 0.09	y : 0.07	
u : 0.31	t : 0.22	v : 0.16	x : 0.12	w : 0.09	y : 0.07	
b : 0.16	e : 0.12	v : 0.11	x : 0.09	w : 0.09	c : 0.09	a : 0.07	g : 0.05	y : 0.05	d : 0.05	f : 0.03	i : 0.01	= : 0.01	
b : 0.18	e : 0.14	c : 0.12	g : 0.09	d : 0.09	x : 0.07	] : 0.07	i : 0.03	w : 0.03	f : 0.03	y : 0.03	a : 0.03	= : 0.01	
e : 0.18	c : 0.12	g : 0.11	b : 0.09	d : 0.09	] : 0.09	x : 0.07	2 : 0.07	f : 0.05	i : 0.03	= : 0.01	y : 0.01	h : 0.01	
e : 0.22	d : 0.16	g : 0.12	f : 0.09	2 : 0.09	b : 0.07	c : 0.05	i : 0.03	= : 0.03	] : 0.03	a : 0.01	: : 0.01	h : 0.01	
e : 0.27	d : 0.16	g : 0.12	f : 0.09	2 : 0.09	i : 0.05	= : 0.05	3 : 0.03	] : 0.03	c : 0.01	: : 0.01	h : 0.01	
e : 0.18	g : 0.14	d : 0.12	f : 0.12	3 : 0.09	2 : 0.07	i : 0.05	= : 0.05	c : 0.03	: : 0.03	h : 0.03	] : 0.01	
d : 0.18	e : 0.18	g : 0.14	f : 0.09	3 : 0.09	i : 0.05	= : 0.05	c : 0.05	4 : 0.03	] : 0.03	h : 0.03	b : 0.01	

#score	1204.4308447438505
#seq	54
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF832JDM_UTP3_transcript_m3_run1.txt

#BEAR
eeeebb[a!!bblllbb]abb]ee	chr1:45242078-45242297(+)$1	219	120	144	9.0847
ddddffffffnnnnnffffff]dd	chr17:42993791-42994001(-)$1	210	173	197	9.0551
a[gggggggooooooggggggg]a	chr5:892819-893030(+)$1	211	141	165	9.3890
==========mmmm==========	chr21:38119982-38120192(+)$1	210	129	153	7.7230
!!hhhhhhhhnnnnnhhhhhhhh2	chr12:6054303-6054521(-)$1	218	187	211	9.7015
!!hhhhhhhhnnnnnhhhhhhhh2	chr12:6054295-6054503(-)$1	208	169	193	9.7015
cccgggggggooooooggggggg2	chr1:109642770-109643014(+)$1	244	216	240	9.1832
c[cccbbcccnnnnnccc]bb]cc	chr5:892808-893016(+)$1	208	54	78	9.9025
eeeee!!eeeeellleeeeeeeee	chr12:7076411-7076641(-)$1	230	0	24	7.6009
ddddffffffnnnnnffffff]dd	chr17:42993801-42994008(-)$1	207	180	204	9.0551
iiiii!!eeeeellleeeeeiiii	chr12:7076444-7076659(-)$1	215	18	42	8.6125
eeeebb[a!!bblllbb]abb]ee	chr1:45242097-45242307(+)$1	210	101	125	9.0847
iiiccc!!bbnnnnnbb]ccc:::	chr21:38119992-38120204(+)$1	212	139	163	7.2630

#otherMatches

#Seq PSSM
UGGCCGUCUUGGUCACCUGUGUGC	chr1:45242078-45242297(+)$1	219	120	144	9.0847
CCUGGUCUCUGGGAGAGAGGCACA	chr17:42993791-42994001(-)$1	210	173	197	9.0551
AGCGCUUCCGGGUCAGGAGGUGGU	chr5:892819-893030(+)$1	211	141	165	9.3890
cgcgcggcacccgagugcugcgcg	chr21:38119982-38120192(+)$1	210	129	153	7.7230
GGUCUCCUACAGGUGGUAGGAGGG	chr12:6054303-6054521(-)$1	218	187	211	9.7015
GGUCUCCUACAGGUGGUAGGAGGG	chr12:6054295-6054503(-)$1	208	169	193	9.7015
CACUUUGAUCUUAUUUGAUCGGAU	chr1:109642770-109643014(+)$1	244	216	240	9.1832
CCGCCCGCGCUCGCUGCGCCGAGG	chr5:892808-893016(+)$1	208	54	78	9.9025
GGCCAGAUCAAUAGCAUUGGUGGC	chr12:7076411-7076641(-)$1	230	0	24	7.6009
CCUGGUCUCUGGGAGAGAGGCACA	chr17:42993801-42994008(-)$1	207	180	204	9.0551
GGCCAGAUCAAUAGCAUUGGUGGC	chr12:7076444-7076659(-)$1	215	18	42	8.6125
UGGCCGUCUUGGUCACCUGUGUGC	chr1:45242097-45242307(+)$1	210	101	125	9.0847
cgcgcccccgacccccgaggcccc	chr21:38119992-38120204(+)$1	212	139	163	7.2630

#DB
((((((.(..((...)).))).))	chr1:45242078-45242297(+)$1	1	120	144	9.0847
((((((((((.....)))))).))	chr17:42993791-42994001(-)$1	1	173	197	9.0551
(.(((((((......))))))).)	chr5:892819-893030(+)$1	1	141	165	9.3890
((((((((((....))))))))))	chr21:38119982-38120192(+)$1	1	129	153	7.7230
..((((((((.....)))))))).	chr12:6054303-6054521(-)$1	1	187	211	9.7015
..((((((((.....)))))))).	chr12:6054295-6054503(-)$1	1	169	193	9.7015
((((((((((......))))))).	chr1:109642770-109643014(+)$1	1	216	240	9.1832
(.((((((((.....))).)).))	chr5:892808-893016(+)$1	1	54	78	9.9025
(((((..(((((...)))))))))	chr12:7076411-7076641(-)$1	1	0	24	7.6009
((((((((((.....)))))).))	chr17:42993801-42994008(-)$1	1	180	204	9.0551
(((((..(((((...)))))))))	chr12:7076444-7076659(-)$1	1	18	42	8.6125
((((((.(..((...)).))).))	chr1:45242097-45242307(+)$1	1	101	125	9.0847
)))(((..((.....)).)))...	chr21:38119992-38120204(+)$1	1	139	163	7.2630

#PSSM
e : 0.23	d : 0.15	! : 0.15	c : 0.15	i : 0.15	a : 0.07	= : 0.07	
e : 0.23	d : 0.15	[ : 0.15	! : 0.15	i : 0.15	= : 0.07	c : 0.07	
e : 0.23	d : 0.15	h : 0.15	c : 0.15	i : 0.15	g : 0.07	= : 0.07	
e : 0.23	d : 0.15	g : 0.15	h : 0.15	c : 0.15	= : 0.07	i : 0.07	
b : 0.15	f : 0.15	g : 0.15	h : 0.15	c : 0.15	= : 0.07	e : 0.07	i : 0.07	
b : 0.23	f : 0.15	g : 0.15	h : 0.15	! : 0.15	= : 0.07	c : 0.07	
! : 0.23	[ : 0.15	f : 0.15	g : 0.15	h : 0.15	= : 0.07	b : 0.07	
a : 0.15	f : 0.15	g : 0.15	h : 0.15	e : 0.15	= : 0.07	c : 0.07	! : 0.07	
! : 0.15	f : 0.15	g : 0.15	h : 0.15	e : 0.15	= : 0.07	c : 0.07	b : 0.07	
! : 0.15	f : 0.15	h : 0.15	e : 0.15	o : 0.07	= : 0.07	g : 0.07	c : 0.07	b : 0.07	
n : 0.46	b : 0.15	o : 0.15	e : 0.15	m : 0.07	
n : 0.46	b : 0.15	o : 0.15	e : 0.15	m : 0.07	
n : 0.46	l : 0.30	o : 0.15	m : 0.07	
n : 0.46	l : 0.30	o : 0.15	m : 0.07	
n : 0.46	l : 0.30	o : 0.15	= : 0.07	
b : 0.23	f : 0.15	h : 0.15	e : 0.15	g : 0.07	= : 0.07	o : 0.07	c : 0.07	
b : 0.23	f : 0.15	g : 0.15	h : 0.15	e : 0.15	= : 0.07	c : 0.07	
] : 0.23	f : 0.15	g : 0.15	h : 0.15	e : 0.15	= : 0.07	c : 0.07	
a : 0.15	f : 0.15	g : 0.15	h : 0.15	e : 0.15	= : 0.07	] : 0.07	c : 0.07	
b : 0.23	f : 0.15	g : 0.15	h : 0.15	e : 0.15	= : 0.07	c : 0.07	
b : 0.23	f : 0.15	g : 0.15	h : 0.15	= : 0.07	e : 0.07	i : 0.07	c : 0.07	
] : 0.38	g : 0.15	h : 0.15	= : 0.07	e : 0.07	i : 0.07	: : 0.07	
e : 0.23	d : 0.15	h : 0.15	] : 0.07	= : 0.07	g : 0.07	c : 0.07	i : 0.07	: : 0.07	
e : 0.23	2 : 0.23	d : 0.15	a : 0.07	= : 0.07	c : 0.07	i : 0.07	: : 0.07	

#score	115.357485943577
#seq	13
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_transcript_m3_run2.txt

#BEAR
:bb[a[a[cccmmmmccc]a]a]b	chr20:61443936-61444221(+)$1	285	71	95	10.4913
fff[ccc[cccmmmmccccccfff	chr6:3750913-3751176(-)$1	263	23	47	11.6425
:ggggggg[bbmmmmbbggggggg	chr7:1113156-1113426(-)$1	270	156	180	9.4824
ffff[ffffffmmmmffffff333	chr17:79962168-79962475(+)$1	307	64	88	9.1943
""bb!!a!!ccclllccc22a]bb	chr6:3320190-3320430(-)$1	240	6	30	9.3680
ee[ccc!!cccmmmmccc22ccc]	chr9:71683243-71683477(+)$1	234	51	75	12.1836
$$ffffff[ccclllccc]fffff	chr16:89585071-89585358(+)$1	287	125	149	8.7923
ddd[gggggggmmmmggggggg33	chr17:79963065-79963331(+)$1	266	207	231	10.0567
ffff[ffffffmmmmffffff]ff	chr19:940067-940314(+)$1	247	129	153	8.8997
bb[bb"""cccmmmmccc333bb]	chr7:158342375-158342643(-)$1	268	25	49	10.6637
FFdddd!!cccmmmmccc]dddd:	chr7:206146-206432(+)$1	286	51	75	9.2425
eeeeeccc[bbmmmmbb]ccc]ee	chr7:1097271-1097520(-)$1	249	203	227	8.8962
ffff####cccmmmmccc22ffff	chr2:227662866-227663182(-)$1	316	226	250	11.3285
[ccc[ffffffmmmmffffff]cc	chr21:46878115-46878420(+)$1	305	153	177	9.0548
iiiiibb!!ccclllccc]bb]ii	chr19:1410906-1411156(+)$1	250	54	78	9.3094
ciiiiiiiiiooooooiiiiiiii	chr1:6513699-6513940(+)$1	241	81	105	8.2848
####ccc[bboooooobb]ccc33	chr19:50099510-50099770(+)$1	260	176	200	8.7653
cgggggggcccmmmmccc:ddddm	chr21:46869406-46869680(+)$1	274	200	224	9.3899
gggggggggggooooooggggggg	chr8:609871-610112(-)$1	241	97	121	8.3305
cc[ccc!!cccmmmmccc22ccc]	chr16:591196-591450(+)$1	254	2	26	12.3734
&&&dddd[cccmmmmccc333ddd	chr2:112022646-112022940(-)$1	294	79	103	9.5885
b[eeeee[cccmmmmccc4444ee	chr8:610207-610431(-)$1	224	101	125	10.9470
d"""ccc[cccmmmmccc]ccc33	chr4:1194837-1195085(-)$1	248	218	242	12.4744
ffffddddcccmmmmccc]dddd:	chr7:158340968-158341340(-)$1	372	115	139	9.2569
e[gggggggbbmmmmbb22ggggg	chr21:34923265-34923516(+)$1	251	36	60	10.3597
ggggggg[accclllccc22a]gg	chr20:60744012-60744274(+)$1	262	199	223	10.5120
ccc!!bb[cccmmmmccc]bb]cc	chr9:134350650-134350917(+)$1	267	94	118	11.3409
"cccgggggggmmmmggggggg77	chr7:156798526-156798795(-)$1	269	209	233	9.1629
eee[ccc[cccmmmmccc333ccc	chr2:219264807-219265082(+)$1	275	51	75	12.3605
b[bb[bb[cccmmmmccc]bb]bb	chr7:158199219-158199544(-)$1	325	171	195	10.3688
c"""ccc[bboooooobb]ccc33	chr2:3475752-3476012(+)$1	260	206	230	8.7545
ggggggg[cccmmmmccc]ggggg	chr14:19888602-19888872(-)$1	270	129	153	12.6522
eee[ccc!!bbmmmmbb]ccceee	chr16:31499458-31499716(-)$1	258	26	50	9.6201
!!eeeee[a[ammmma]a]eeeee	chr12:133130228-133130480(+)$1	252	102	126	9.6951
Feeeee!!cccmmmmccceeeeeh	chr20:31022797-31023049(+)$1	252	141	165	9.7981
ggggggg[cccmmmmcccgggggg	chr19:4048131-4048399(-)$1	268	202	226	12.2092
"ddddbb[cccmmmmccc333bb]	chr16:8941585-8941855(+)$1	270	156	180	10.9456
ccc[gggggggmmmmggggggg]c	chr20:62551618-62551922(+)$1	304	148	172	10.3228
fffdddd[cccmmmmccc22dddd	chr16:89183032-89183339(+)$1	307	265	289	10.8007
!!ffffff[bbmmmmbbffffff2	chr2:202001629-202001900(+)$1	271	126	150	9.1467
========[bbmmmmbb]======	chr11:637267-637555(+)$1	288	148	172	10.4746
gggggggcccnnnnnccc]ggggg	chr13:92000956-92001202(+)$1	246	165	189	8.6351
ffff!!a[cccmmmmccc]a22ff	chr7:158277622-158277891(-)$1	269	33	57	11.5290
:ffffff[cccmmmmccc22ffff	chr7:1154936-1155198(-)$1	262	74	98	10.9218
d[iiiiiiiiimmmmiiiiiiiii	chr7:285802-286042(+)$1	240	11	35	10.2681
ggggggg!!aooooooa22ggggg	chr12:104697462-104697747(+)$1	285	245	269	9.0334
fffccc!!cccmmmmccc22ccc:	chr19:453661-453925(-)$1	264	121	145	11.3382
""a[ccc[cccmmmmccc]ccc]a	chr7:158317578-158317825(-)$1	247	82	106	12.6131
##ggggggg[ammmma]ggggggg	chr1:2171651-2171946(+)$1	295	121	145	10.4715
#cccccc!!bbmmmmbb22ccc]c	chr3:196695284-196695604(-)$1	320	255	279	10.5052
cffffff[ccclllccc]ffffff	chr16:75296100-75296348(-)$1	248	171	195	8.8495
b!!dddd[ccclllccc]dddd33	chr17:80849498-80849775(+)$1	277	43	67	8.3521
ddd:ccc[cccmmmmccc22ccc:	chr13:114186144-114186355(+)$1	211	111	135	9.9127

#otherMatches

#Seq PSSM
ACGGAGCGUGGAGCCCCAGGAUGC	chr20:61443936-61444221(+)$1	285	71	95	10.4913
GCCCGGUACCUCCCGAGGGCCGGC	chr6:3750913-3751176(-)$1	263	23	47	11.6425
GCUUUGAACAGGCGACUUUCAAGG	chr7:1113156-1113426(-)$1	270	156	180	9.4824
GGAUAAAUGGUUAGCAUCAUUGUG	chr17:79962168-79962475(+)$1	307	64	88	9.1943
aaccaaggagggaaucccagcagg	chr6:3320190-3320430(-)$1	240	6	30	9.3680
CAACAGAAGUUCUACAAUGACUGA	chr9:71683243-71683477(+)$1	234	51	75	12.1836
gacagccggagggagccugugguu	chr16:89585071-89585358(+)$1	287	125	149	8.7923
CGGCAGGUCUCGUGAGAGGCCUCA	chr17:79963065-79963331(+)$1	266	207	231	10.0567
Aggguggccaacuuuuuggcuucc	chr19:940067-940314(+)$1	247	129	153	8.8997
UGGGUCUAGUGAGGUCACGUCAUG	chr7:158342375-158342643(-)$1	268	25	49	10.6637
AGAUCCUCAGAUAUUUCUUGGAUU	chr7:206146-206432(+)$1	286	51	75	9.2425
UGCUGUGUAGGUUGGCCAGCACCA	chr7:1097271-1097520(-)$1	249	203	227	8.8962
AUCCUGAAGCCCAAGGGCCUGGGU	chr2:227662866-227663182(-)$1	316	226	250	11.3285
GCAGGGGCCGUGCCCACGGCUGUU	chr21:46878115-46878420(+)$1	305	153	177	9.0548
CAGAGCCAGGCCCAUGGCAGGUCU	chr19:1410906-1411156(+)$1	250	54	78	9.3094
UGCUUCCUAUUUGUAUGUGGGGAG	chr1:6513699-6513940(+)$1	241	81	105	8.2848
CACCUGCAGAGUGUCAUCCGCACC	chr19:50099510-50099770(+)$1	260	176	200	8.7653
GGGGAGUGCCCUCCAGGGACCUGG	chr21:46869406-46869680(+)$1	274	200	224	9.3899
GGCUGCCCCCUUCCCUUGGGGGGC	chr8:609871-610112(-)$1	241	97	121	8.3305
GCAGGUGGCCAGGCCUGGGAACCA	chr16:591196-591450(+)$1	254	2	26	12.3734
ACAUGGAAGUGCUUUUACCCAUCC	chr2:112022646-112022940(-)$1	294	79	103	9.5885
aucaggccugcccagguaaucugc	chr8:610207-610431(-)$1	224	101	125	10.9470
CAGGCCAACCUCGUCAGGGUGGGA	chr4:1194837-1195085(-)$1	248	218	242	12.4744
AGCCCCCUGGUCAUCGCUGAGGGG	chr7:158340968-158341340(-)$1	372	115	139	9.2569
GUGGCAACUGGGGCACUAGAGUUG	chr21:34923265-34923516(+)$1	251	36	60	10.3597
CCUGGCAUCUGGGCGCCAUUGCUG	chr20:60744012-60744274(+)$1	262	199	223	10.5120
CGUGGUCGGCCUGCUGGCGGAAAU	chr9:134350650-134350917(+)$1	267	94	118	11.3409
CGCCCGCUUGUGCCCGCAGGUGAA	chr7:156798526-156798795(-)$1	269	209	233	9.1629
CGGGGCCCGCUGCGGGGCAAAGGU	chr2:219264807-219265082(+)$1	275	51	75	12.3605
CAGGGCAGGUCUCAGGGCAUGGUC	chr7:158199219-158199544(-)$1	325	171	195	10.3688
AGGGCAGGGUGGGGAGACGCUGAG	chr2:3475752-3476012(+)$1	260	206	230	8.7545
GGGGUCGGCCCGGCGGGGGUGACC	chr14:19888602-19888872(-)$1	270	129	153	12.6522
GCCACCGCGCCGUUAGGACGGGGC	chr16:31499458-31499716(-)$1	258	26	50	9.6201
AAUGGGAGUGCGAGGGGGgucuca	chr12:133130228-133130480(+)$1	252	102	126	9.6951
UGCAGACAAUGGUCCCAUUCUGUC	chr20:31022797-31023049(+)$1	252	141	165	9.7981
GCCGUACCUGUGCCAGCAGUGCGG	chr19:4048131-4048399(-)$1	268	202	226	12.2092
AGAGCCGAGGGUCCUCCCACACGU	chr16:8941585-8941855(+)$1	270	156	180	10.9456
CGUCUGGUGGGGAUGCCCGCCAUG	chr20:62551618-62551922(+)$1	304	148	172	10.3228
UCUUCGGUGGCUAAAGCUCUCUGG	chr16:89183032-89183339(+)$1	307	265	289	10.8007
GAAGGGGGCAGAGACCUCCCCUUG	chr2:202001629-202001900(+)$1	271	126	150	9.1467
CUGGUGGGGGGCGUGCUGCUCAUC	chr11:637267-637555(+)$1	288	148	172	10.4746
GGCCGCGUGCGACGGGCACCGCGG	chr13:92000956-92001202(+)$1	246	165	189	8.6351
GGCUCCGUGUCUCGUGGCUCAAGG	chr7:158277622-158277891(-)$1	269	33	57	11.5290
AGUCAUCCUGCGUGGGCGUUGGUG	chr7:1154936-1155198(-)$1	262	74	98	10.9218
ACAGGGCGGUGCCCACAUUGCCCU	chr7:285802-286042(+)$1	240	11	35	10.2681
CGCUGAUGAAGAUGGAUGUGUCAG	chr12:104697462-104697747(+)$1	285	245	269	9.0334
AGCCCAGGCCCGGUGGGGGAUGGA	chr19:453661-453925(-)$1	264	121	145	11.3382
AAGGGCUGUCUUUUCGGAGGGUGC	chr7:158317578-158317825(-)$1	247	82	106	12.6131
CGUGGGAGGGGCAGGCGCCUCCUA	chr1:2171651-2171946(+)$1	295	121	145	10.4715
CGCCCCGGACCUAGGGGGACGGAG	chr3:196695284-196695604(-)$1	320	255	279	10.5052
UGGCCGCCUGCUGAGUAUGUGGCC	chr16:75296100-75296348(-)$1	248	171	195	8.8495
AGAUUUGGAAUGAAGUUGUAAGAA	chr17:80849498-80849775(+)$1	277	43	67	8.3521
gcuugguccuggagccagauaccu	chr13:114186144-114186355(+)$1	211	111	135	9.9127

#DB
.((.(.(.(((....))).).).)	chr20:61443936-61444221(+)$1	1	71	95	10.4913
(((.(((.(((....)))))))))	chr6:3750913-3751176(-)$1	1	23	47	11.6425
.(((((((.((....)))))))))	chr7:1113156-1113426(-)$1	1	156	180	9.4824
((((.((((((....))))))...	chr17:79962168-79962475(+)$1	1	64	88	9.1943
..((..(..(((...)))..).))	chr6:3320190-3320430(-)$1	1	6	30	9.3680
((.(((..(((....)))..))).	chr9:71683243-71683477(+)$1	1	51	75	12.1836
..((((((.(((...))).)))))	chr16:89585071-89585358(+)$1	1	125	149	8.7923
(((.(((((((....)))))))..	chr17:79963065-79963331(+)$1	1	207	231	10.0567
((((.((((((....)))))).))	chr19:940067-940314(+)$1	1	129	153	8.8997
((.((...(((....)))...)).	chr7:158342375-158342643(-)$1	1	25	49	10.6637
((((((..(((....))).)))).	chr7:206146-206432(+)$1	1	51	75	9.2425
((((((((.((....)).))).))	chr7:1097271-1097520(-)$1	1	203	227	8.8962
((((....(((....)))..))))	chr2:227662866-227663182(-)$1	1	226	250	11.3285
.(((.((((((....)))))).))	chr21:46878115-46878420(+)$1	1	153	177	9.0548
(((((((..(((...))).)).))	chr19:1410906-1411156(+)$1	1	54	78	9.3094
)(((((((((......))))))))	chr1:6513699-6513940(+)$1	1	81	105	8.2848
....(((.((......)).)))..	chr19:50099510-50099770(+)$1	1	176	200	8.7653
))))))))(((....))).((((.	chr21:46869406-46869680(+)$1	1	200	224	9.3899
))))(((((((......)))))))	chr8:609871-610112(-)$1	1	97	121	8.3305
((.(((..(((....)))..))).	chr16:591196-591450(+)$1	1	2	26	12.3734
...((((.(((....)))...)))	chr2:112022646-112022940(-)$1	1	79	103	9.5885
(.(((((.(((....)))....))	chr8:610207-610431(-)$1	1	101	125	10.9470
(...(((.(((....))).)))..	chr4:1194837-1195085(-)$1	1	218	242	12.4744
))))(((((((....))).)))).	chr7:158340968-158341340(-)$1	1	115	139	9.2569
(.(((((((((....))..)))))	chr21:34923265-34923516(+)$1	1	36	60	10.3597
(((((((.((((...)))..).))	chr20:60744012-60744274(+)$1	1	199	223	10.5120
(((..((.(((....))).)).))	chr9:134350650-134350917(+)$1	1	94	118	11.3409
.((((((((((....)))))))..	chr7:156798526-156798795(-)$1	1	209	233	9.1629
(((.(((.(((....)))...)))	chr2:219264807-219265082(+)$1	1	51	75	12.3605
(.((.((.(((....))).)).))	chr7:158199219-158199544(-)$1	1	171	195	10.3688
(...(((.((......)).)))..	chr2:3475752-3476012(+)$1	1	206	230	8.7545
(((((((.(((....))).)))))	chr14:19888602-19888872(-)$1	1	129	153	12.6522
(((.(((..((....)).))))))	chr16:31499458-31499716(-)$1	1	26	50	9.6201
..(((((.(.(....).).)))))	chr12:133130228-133130480(+)$1	1	102	126	9.6951
((((((..(((....))))))))(	chr20:31022797-31023049(+)$1	1	141	165	9.7981
(((((((.(((....)))))))))	chr19:4048131-4048399(-)$1	1	202	226	12.2092
.((((((.(((....)))...)).	chr16:8941585-8941855(+)$1	1	156	180	10.9456
(((.(((((((....))))))).)	chr20:62551618-62551922(+)$1	1	148	172	10.3228
(((((((.(((....)))..))))	chr16:89183032-89183339(+)$1	1	265	289	10.8007
..((((((.((....)))))))).	chr2:202001629-202001900(+)$1	1	126	150	9.1467
((((((((.((....)).))))))	chr11:637267-637555(+)$1	1	148	172	10.4746
((((((((((.....))).)))))	chr13:92000956-92001202(+)$1	1	165	189	8.6351
((((..(.(((....))).)..))	chr7:158277622-158277891(-)$1	1	33	57	11.5290
.((((((.(((....)))..))))	chr7:1154936-1155198(-)$1	1	74	98	10.9218
(.(((((((((....)))))))))	chr7:285802-286042(+)$1	1	11	35	10.2681
(((((((..(......)..)))))	chr12:104697462-104697747(+)$1	1	245	269	9.0334
)))(((..(((....)))..))).	chr19:453661-453925(-)$1	1	121	145	11.3382
..(.(((.(((....))).))).)	chr7:158317578-158317825(-)$1	1	82	106	12.6131
..(((((((.(....).)))))))	chr1:2171651-2171946(+)$1	1	121	145	10.4715
.((((((..((....))..))).)	chr3:196695284-196695604(-)$1	1	255	279	10.5052
(((((((.(((...))).))))))	chr16:75296100-75296348(-)$1	1	171	195	8.8495
(..((((.(((...))).))))..	chr17:80849498-80849775(+)$1	1	43	67	8.3521
))).(((.(((....)))..))).	chr13:114186144-114186355(+)$1	1	111	135	9.9127

#PSSM
f : 0.15	c : 0.13	g : 0.11	e : 0.09	" : 0.07	d : 0.07	b : 0.07	: : 0.05	# : 0.05	F : 0.03	! : 0.03	$ : 0.01	[ : 0.01	i : 0.01	& : 0.01	= : 0.01	
f : 0.18	g : 0.15	c : 0.11	e : 0.09	" : 0.07	[ : 0.07	d : 0.05	! : 0.05	b : 0.03	i : 0.03	# : 0.03	$ : 0.01	F : 0.01	& : 0.01	= : 0.01	
f : 0.22	g : 0.18	e : 0.11	c : 0.09	d : 0.07	b : 0.05	[ : 0.05	i : 0.05	" : 0.03	# : 0.01	& : 0.01	= : 0.01	a : 0.01	! : 0.01	
g : 0.18	f : 0.16	[ : 0.13	c : 0.11	d : 0.09	e : 0.07	b : 0.05	i : 0.05	" : 0.03	# : 0.01	! : 0.01	= : 0.01	: : 0.01	
g : 0.24	c : 0.22	d : 0.11	[ : 0.07	f : 0.07	e : 0.07	! : 0.05	i : 0.05	a : 0.01	b : 0.01	# : 0.01	= : 0.01	
c : 0.24	g : 0.24	f : 0.13	d : 0.09	b : 0.07	e : 0.05	! : 0.03	i : 0.03	[ : 0.01	" : 0.01	# : 0.01	= : 0.01	
g : 0.24	c : 0.18	f : 0.13	! : 0.09	b : 0.07	d : 0.07	a : 0.05	i : 0.03	e : 0.03	" : 0.01	# : 0.01	= : 0.01	
[ : 0.41	! : 0.18	g : 0.15	f : 0.09	c : 0.03	i : 0.03	" : 0.01	# : 0.01	d : 0.01	= : 0.01	
c : 0.52	g : 0.11	[ : 0.09	! : 0.09	f : 0.05	i : 0.03	b : 0.03	a : 0.03	
c : 0.60	b : 0.16	g : 0.07	f : 0.05	i : 0.03	[ : 0.03	a : 0.01	
c : 0.58	b : 0.13	g : 0.07	o : 0.07	f : 0.05	a : 0.03	n : 0.01	i : 0.01	
m : 0.77	o : 0.09	c : 0.07	l : 0.03	n : 0.01	
m : 0.77	l : 0.11	o : 0.09	n : 0.01	
m : 0.77	l : 0.11	o : 0.09	n : 0.01	
m : 0.77	o : 0.09	l : 0.07	c : 0.03	n : 0.01	
c : 0.60	b : 0.13	o : 0.09	f : 0.05	g : 0.05	a : 0.03	i : 0.01	
c : 0.60	b : 0.16	f : 0.05	g : 0.05	i : 0.03	] : 0.03	o : 0.01	a : 0.01	
c : 0.56	g : 0.11	] : 0.09	f : 0.07	2 : 0.05	i : 0.03	b : 0.03	a : 0.01	
] : 0.28	2 : 0.22	g : 0.13	f : 0.09	3 : 0.07	c : 0.05	i : 0.03	: : 0.01	4 : 0.01	e : 0.01	= : 0.01	d : 0.01	
g : 0.20	2 : 0.16	c : 0.15	f : 0.11	3 : 0.07	d : 0.07	b : 0.05	a : 0.03	i : 0.03	e : 0.03	4 : 0.01	= : 0.01	
c : 0.22	g : 0.20	f : 0.15	d : 0.09	3 : 0.07	b : 0.05	a : 0.03	i : 0.03	e : 0.03	] : 0.01	4 : 0.01	= : 0.01	2 : 0.01	
g : 0.20	c : 0.18	] : 0.15	f : 0.11	d : 0.11	e : 0.05	b : 0.03	i : 0.03	a : 0.01	3 : 0.01	4 : 0.01	= : 0.01	2 : 0.01	
g : 0.16	f : 0.15	c : 0.13	3 : 0.11	d : 0.09	e : 0.09	] : 0.07	b : 0.07	i : 0.05	7 : 0.01	= : 0.01	
g : 0.16	f : 0.13	3 : 0.11	c : 0.09	] : 0.07	: : 0.07	e : 0.07	b : 0.05	i : 0.05	d : 0.03	m : 0.01	7 : 0.01	h : 0.01	2 : 0.01	= : 0.01	a : 0.01	

#score	538.9733127360319
#seq	53
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_transcript_m3_run2.txt

#BEAR
ddeeeeeooooooeeeee]dd	chr7:40547183-40547455(+)$1	272	121	142	11.6350
cc[ddddoooooodddd]ccc	chr20:10551727-10551986(+)$1	259	29	50	12.4026
eeeecccooooooccc]eeee	chr20:33073581-33073842(+)$1	261	106	127	12.5117
dd!!cccooooooccc]dddd	chr11:12962298-12962580(+)$1	282	199	220	12.7294
cc[a[bboooooobb]accce	chr6:24226694-24226950(-)$1	256	223	244	11.6578
bb[ddddoooooodddd]bb:	chr2:153237184-153237428(+)$1	244	11	32	10.5210
fff[cccooooooccc]ffff	chr2:98591343-98591623(-)$1	280	7	28	12.2763
e!!ddddoooooodddd22ee	chr15:85594315-85594576(+)$1	261	137	158	11.9126
ee[ddddooooooddddeeee	chr7:110926940-110927189(-)$1	249	106	127	11.8588
hhh[cccooooooccchhhhh	chr11:22795199-22795436(+)$1	237	65	86	11.5505
c!!ddddoooooodddd333c	chr17:7516885-7517163(-)$1	278	174	195	12.6222
!!eeeeeooooooeeeee22e	chr14:19859554-19859814(-)$1	260	14	35	11.6738
ccc[cccooooooccc]cccc	chr1:171498026-171498291(+)$1	265	148	169	13.2321
iiiiiiiooooooiiiiiiii	chr20:18694411-18694693(+)$1	282	161	182	12.7075
g[eeeeeooooooeeeee333	chr2:207640406-207640677(+)$1	271	55	76	12.1988
cceeeeeooooooeeeee:bb	chr20:30960186-30960433(+)$1	247	125	146	10.5489
=======oooooo========	chr6:16609590-16609875(-)$1	285	69	90	13.0582
ddeeeeeooooooeeeee:gg	chr17:55163895-55164163(+)$1	268	88	109	10.8235
!!ccc[bboooooobb]ccc4	chr6:138761291-138761545(-)$1	254	155	176	10.1024
=======oooooo========	chr6:52377301-52377627(-)$1	326	220	241	13.0582
:ccccccooooooccc]ccc:	chr14:68493993-68494212(+)$1	219	197	218	11.2385
ddd[cccooooooccc]dddd	chr14:23953768-23954022(+)$1	254	35	56	12.4443
ee[ddddooooooddddeeee	chr9:687782-688112(+)$1	330	84	105	11.8588
=======oooooo========	chr8:145966908-145967155(-)$1	247	223	244	13.0582
ff"""bboooooobbffffff	chr4:140618034-140618257(+)$1	223	189	210	10.7569
dddd!!aooooooa22dddd]	chr2:62952236-62952475(+)$1	239	117	138	11.0056
ddd[cccooooooccc]dddd	chr9:79808951-79809215(+)$1	264	120	141	12.4443
eeee!!aooooooa]eeeee]	chr9:14828099-14828388(-)$1	289	126	147	11.7439
ffeeeeeooooooeeeee333	chrX:18932592-18932893(-)$1	301	125	146	11.8816
cceeeeeooooooeeeee]cc	chr6:64392051-64392296(+)$1	245	148	169	12.0674
ccc[cccooooooccc]ccc:	chr7:129732383-129732646(+)$1	263	191	212	12.5320
gggggggooooooggggggg:	chr4:144269581-144269901(+)$1	320	0	21	11.8444
ee[a[bboooooobb22a]ee	chr12:26689188-26689493(-)$1	305	40	61	11.2126
a[eeeeeooooooeeeeeacc	chr7:34593557-34593795(-)$1	238	96	117	11.9316
gggggggooooooggggggg:	chr20:10441672-10441947(+)$1	275	20	41	11.8444
dddddddooooooddddbb!!	chr10:81509588-81509847(-)$1	259	202	223	10.8270
gggggggooooooggggggge	chr1:162139821-162140067(+)$1	246	68	89	12.4805
bb[ddddoooooodddd]bb:	chr2:46544462-46544716(+)$1	254	121	142	10.5210
cccddddoooooodddd22cc	chr5:52309892-52310130(+)$1	238	144	165	11.9168
dd"""bboooooobb333ddd	chr14:35411451-35411751(-)$1	300	223	244	11.5087
gggggggooooooggggggg]	chr2:32722137-32722408(+)$1	271	35	56	12.6055
$ffffffooooooffffff33	chr15:52325336-52325682(+)$1	346	142	163	10.5567
d####bboooooobb333ddd	chr6:128473398-128473756(-)$1	358	171	192	11.4342
gggggggoooooogggggggC	chr2:207646783-207647019(+)$1	236	150	171	11.7074
####cccooooooccc333cc	chr5:87507449-87507690(-)$1	241	51	72	13.0516
iiiiiiiooooooiiiiiiii	chr17:76819348-76819603(-)$1	255	52	73	12.7075
ccc[cccooooooccc]ccc2	chr17:7516263-7516510(-)$1	247	81	102	13.0499
gggggggooooooggggggg:	chr2:136337972-136338221(+)$1	249	214	235	11.8444
eee!!bboooooobb22eeee	chr7:22241868-22242145(-)$1	277	63	84	11.1411
ccc[cccooooooccc]ccc:	chr2:202331945-202332273(+)$1	328	183	204	12.5320
((a[cccooooooccc]a22e	chr3:185395170-185395395(-)$1	225	14	35	11.2694
ccc[cccooooooccc]ccc]	chr11:11892617-11892898(+)$1	281	40	61	13.2932
"""ddddoooooodddd333c	chr3:132313257-132313532(-)$1	275	181	202	12.3363
gggggggooooooggggggg]	chr20:1332333-1332606(+)$1	273	139	160	12.6055
f!!ddddooooooddddffff	chr12:120687388-120687650(-)$1	262	113	134	11.7167
ddddcccooooooccc]dddd	chr7:151749949-151750200(+)$1	251	142	163	12.2059
iiiiiiiooooooiiiiiiii	chr7:137678017-137678248(-)$1	231	83	104	12.7075

#otherMatches

#Seq PSSM
UACCUCGUGCCAGUGAGGCUA	chr7:40547183-40547455(+)$1	272	121	142	11.6350
agacgugagccuccaugccug	chr20:10551727-10551986(+)$1	259	29	50	12.4026
gucuugcuauuuugcacaggc	chr20:33073581-33073842(+)$1	261	106	127	12.5117
uccuucguuuugucgaugaga	chr11:12962298-12962580(+)$1	282	199	220	12.7294
CAAGUCUUGCCAUAGUCUGCU	chr6:24226694-24226950(-)$1	256	223	244	11.6578
CAUAUGUAAUCUAACAUUUGA	chr2:153237184-153237428(+)$1	244	11	32	10.5210
caaagaucuuuuuguuauuga	chr2:98591343-98591623(-)$1	280	7	28	12.2763
uuaggguuuucuuaccuauaa	chr15:85594315-85594576(+)$1	261	137	158	11.9126
agcaagucaucucacuucucu	chr7:110926940-110927189(-)$1	249	106	127	11.8588
AAGAUGGCCCUUUCUACUUGU	chr11:22795199-22795436(+)$1	237	65	86	11.5505
AUAAUCUCUAAAAGGAUCUCU	chr17:7516885-7517163(-)$1	278	174	195	12.6222
cucggaacuguuuuucugucu	chr14:19859554-19859814(-)$1	260	14	35	11.6738
caccuugaccuaccaaagugc	chr1:171498026-171498291(+)$1	265	148	169	13.2321
AGCCCAGCACGGUCUGGGUUC	chr20:18694411-18694693(+)$1	282	161	182	12.7075
gcaguuugguccugggcuuuu	chr2:207640406-207640677(+)$1	271	55	76	12.1988
cuagguacauaguugccuuca	chr20:30960186-30960433(+)$1	247	125	146	10.5489
AUGUACUAGACCAGGUGUGUU	chr6:16609590-16609875(-)$1	285	69	90	13.0582
GUGCGCGUUACUUCGUGUUUA	chr17:55163895-55164163(+)$1	268	88	109	10.8235
AUCUGUACUCAUAUGUUCAGU	chr6:138761291-138761545(-)$1	254	155	176	10.1024
CUGCUGGGGCCUGUCAGUGGA	chr6:52377301-52377627(-)$1	326	220	241	13.0582
ugagucauagauuugaucucu	chr14:68493993-68494212(+)$1	219	197	218	11.2385
UGCUGAGUCUGACUUCUGUAU	chr14:23953768-23954022(+)$1	254	35	56	12.4443
UAUAAACUUGAGUGUUUUAAG	chr9:687782-688112(+)$1	330	84	105	11.8588
cugacucauuucagggucaga	chr8:145966908-145967155(-)$1	247	223	244	13.0582
ccaauccagagaagggguucu	chr4:140618034-140618257(+)$1	223	189	210	10.7569
guggugacagugauauccauc	chr2:62952236-62952475(+)$1	239	117	138	11.0056
ccuggcaaaacagugcgggga	chr9:79808951-79809215(+)$1	264	120	141	12.4443
ccuucuggacaugcugaggcu	chr9:14828099-14828388(-)$1	289	126	147	11.7439
gagagacccuccagucuucug	chrX:18932592-18932893(-)$1	301	125	146	11.8816
cugggaccaccaagucuuaag	chr6:64392051-64392296(+)$1	245	148	169	12.0674
UGGGAGGGGUUAACCUGCUAU	chr7:129732383-129732646(+)$1	263	191	212	12.5320
gaagguuuucuuugacuuuuc	chr4:144269581-144269901(+)$1	320	0	21	11.8444
caacuguccuucaaccugaug	chr12:26689188-26689493(-)$1	305	40	61	11.2126
cuccucaucucuuugagggau	chr7:34593557-34593795(-)$1	238	96	117	11.9316
guucucuucuuauagagaacu	chr20:10441672-10441947(+)$1	275	20	41	11.8444
ggaagcuuaguuuggcugcau	chr10:81509588-81509847(-)$1	259	202	223	10.8270
guuauaauuguuuuuaugauu	chr1:162139821-162140067(+)$1	246	68	89	12.4805
gcucuugaguaacuaggugca	chr2:46544462-46544716(+)$1	254	121	142	10.5210
gcccauucaguaugauguugg	chr5:52309892-52310130(+)$1	238	144	165	11.9168
aguucucuccucugauuuuua	chr14:35411451-35411751(-)$1	300	223	244	11.5087
uagauguuucccugcaucugu	chr2:32722137-32722408(+)$1	271	35	56	12.6055
gacugaccuuugagucagugg	chr15:52325336-52325682(+)$1	346	142	163	10.5567
GUGCCUCUCCCCUGAUAUCCC	chr6:128473398-128473756(-)$1	358	171	192	11.4342
gccaaggugaucuccuuggug	chr2:207646783-207647019(+)$1	236	150	171	11.7074
uucuggauuaaccucucauca	chr5:87507449-87507690(-)$1	241	51	72	13.0516
CUUUCCUCCUCCUGGGGAAGG	chr17:76819348-76819603(-)$1	255	52	73	12.7075
AGUCAUAUUUUUCUAUAACUG	chr17:7516263-7516510(-)$1	247	81	102	13.0499
UUCAUUAUCUCCCUAAUGAGU	chr2:136337972-136338221(+)$1	249	214	235	11.8444
UUCUUAGAUAAUGCUUUGGAA	chr7:22241868-22242145(-)$1	277	63	84	11.1411
UGGUGGUCGUCCAACCUCCAA	chr2:202331945-202332273(+)$1	328	183	204	12.5320
uggucccuugauugggucaug	chr3:185395170-185395395(-)$1	225	14	35	11.2694
uagucuuuagauuaggucuaa	chr11:11892617-11892898(+)$1	281	40	61	13.2932
auaaugauuaaauucaugaau	chr3:132313257-132313532(-)$1	275	181	202	12.3363
cuccaguuauuguacuggagu	chr20:1332333-1332606(+)$1	273	139	160	12.6055
UCUUUGGAGGCAGCCAAGCCG	chr12:120687388-120687650(-)$1	262	113	134	11.7167
GGGCAGUUCUCCUGCUGGUCC	chr7:151749949-151750200(+)$1	251	142	163	12.2059
UUGUUUUGAUUAGAGAACAAG	chr7:137678017-137678248(-)$1	231	83	104	12.7075

#DB
(((((((......))))).))	chr7:40547183-40547455(+)$1	1	121	142	11.6350
((.((((......)))).)))	chr20:10551727-10551986(+)$1	1	29	50	12.4026
(((((((......))).))))	chr20:33073581-33073842(+)$1	1	106	127	12.5117
((..(((......))).))))	chr11:12962298-12962580(+)$1	1	199	220	12.7294
((.(.((......)).)))))	chr6:24226694-24226950(-)$1	1	223	244	11.6578
((.((((......)))).)).	chr2:153237184-153237428(+)$1	1	11	32	10.5210
(((.(((......))).))))	chr2:98591343-98591623(-)$1	1	7	28	12.2763
(..((((......))))..))	chr15:85594315-85594576(+)$1	1	137	158	11.9126
((.((((......))))))))	chr7:110926940-110927189(-)$1	1	106	127	11.8588
(((.(((......))))))))	chr11:22795199-22795436(+)$1	1	65	86	11.5505
(..((((......))))...)	chr17:7516885-7517163(-)$1	1	174	195	12.6222
..(((((......)))))..)	chr14:19859554-19859814(-)$1	1	14	35	11.6738
(((.(((......))).)))(	chr1:171498026-171498291(+)$1	1	148	169	13.2321
(((((((......))))))))	chr20:18694411-18694693(+)$1	1	161	182	12.7075
(.(((((......)))))...	chr2:207640406-207640677(+)$1	1	55	76	12.1988
))(((((......))))).((	chr20:30960186-30960433(+)$1	1	125	146	10.5489
(((((((......))))))))	chr6:16609590-16609875(-)$1	1	69	90	13.0582
))(((((......))))).((	chr17:55163895-55164163(+)$1	1	88	109	10.8235
..(((.((......)).))).	chr6:138761291-138761545(-)$1	1	155	176	10.1024
(((((((......))))))))	chr6:52377301-52377627(-)$1	1	220	241	13.0582
.((((((......))).))).	chr14:68493993-68494212(+)$1	1	197	218	11.2385
(((.(((......))).))))	chr14:23953768-23954022(+)$1	1	35	56	12.4443
((.((((......))))))))	chr9:687782-688112(+)$1	1	84	105	11.8588
(((((((......))))))))	chr8:145966908-145967155(-)$1	1	223	244	13.0582
((...((......))))))))	chr4:140618034-140618257(+)$1	1	189	210	10.7569
((((..(......)..)))).	chr2:62952236-62952475(+)$1	1	117	138	11.0056
(((.(((......))).))))	chr9:79808951-79809215(+)$1	1	120	141	12.4443
((((..(......).))))).	chr9:14828099-14828388(-)$1	1	126	147	11.7439
(((((((......)))))...	chrX:18932592-18932893(-)$1	1	125	146	11.8816
(((((((......))))).))	chr6:64392051-64392296(+)$1	1	148	169	12.0674
(((.(((......))).))).	chr7:129732383-129732646(+)$1	1	191	212	12.5320
(((((((......))))))).	chr4:144269581-144269901(+)$1	1	0	21	11.8444
((.(.((......))..).))	chr12:26689188-26689493(-)$1	1	40	61	11.2126
(.(((((......))))))))	chr7:34593557-34593795(-)$1	1	96	117	11.9316
(((((((......))))))).	chr20:10441672-10441947(+)$1	1	20	41	11.8444
)))((((......))))((..	chr10:81509588-81509847(-)$1	1	202	223	10.8270
(((((((......)))))))(	chr1:162139821-162140067(+)$1	1	68	89	12.4805
((.((((......)))).)).	chr2:46544462-46544716(+)$1	1	121	142	10.5210
(((((((......))))..))	chr5:52309892-52310130(+)$1	1	144	165	11.9168
((...((......))...)))	chr14:35411451-35411751(-)$1	1	223	244	11.5087
(((((((......))))))).	chr2:32722137-32722408(+)$1	1	35	56	12.6055
.((((((......))))))..	chr15:52325336-52325682(+)$1	1	142	163	10.5567
(....((......))...)))	chr6:128473398-128473756(-)$1	1	171	192	11.4342
(((((((......))))))))	chr2:207646783-207647019(+)$1	1	150	171	11.7074
....(((......)))...))	chr5:87507449-87507690(-)$1	1	51	72	13.0516
(((((((......))))))))	chr17:76819348-76819603(-)$1	1	52	73	12.7075
(((.(((......))).))).	chr17:7516263-7516510(-)$1	1	81	102	13.0499
(((((((......))))))).	chr2:136337972-136338221(+)$1	1	214	235	11.8444
(((..((......))..))))	chr7:22241868-22242145(-)$1	1	63	84	11.1411
(((.(((......))).))).	chr2:202331945-202332273(+)$1	1	183	204	12.5320
..(.(((......))).)..)	chr3:185395170-185395395(-)$1	1	14	35	11.2694
(((.(((......))).))).	chr11:11892617-11892898(+)$1	1	40	61	13.2932
...((((......))))...)	chr3:132313257-132313532(-)$1	1	181	202	12.3363
(((((((......))))))).	chr20:1332333-1332606(+)$1	1	139	160	12.6055
(..((((......))))))))	chr12:120687388-120687650(-)$1	1	113	134	11.7167
(((((((......))).))))	chr7:151749949-151750200(+)$1	1	142	163	12.2059
(((((((......))))))))	chr7:137678017-137678248(-)$1	1	83	104	12.7075

#PSSM
c : 0.19	d : 0.17	g : 0.14	e : 0.12	f : 0.07	i : 0.05	= : 0.05	b : 0.03	! : 0.03	h : 0.01	: : 0.01	a : 0.01	$ : 0.01	# : 0.01	( : 0.01	" : 0.01	
c : 0.19	d : 0.15	g : 0.12	e : 0.10	! : 0.08	f : 0.07	i : 0.05	= : 0.05	b : 0.03	[ : 0.03	# : 0.03	h : 0.01	( : 0.01	" : 0.01	
e : 0.19	c : 0.14	[ : 0.12	g : 0.12	d : 0.08	! : 0.07	i : 0.05	= : 0.05	" : 0.05	f : 0.03	# : 0.03	h : 0.01	a : 0.01	
d : 0.22	e : 0.17	[ : 0.17	g : 0.12	i : 0.05	= : 0.05	! : 0.03	a : 0.03	c : 0.03	" : 0.03	# : 0.03	f : 0.01	
c : 0.28	d : 0.19	e : 0.14	g : 0.12	i : 0.05	= : 0.05	! : 0.05	[ : 0.03	" : 0.03	f : 0.01	# : 0.01	
c : 0.26	d : 0.19	e : 0.14	g : 0.12	b : 0.10	i : 0.05	= : 0.05	! : 0.03	[ : 0.01	f : 0.01	
c : 0.26	d : 0.19	e : 0.14	b : 0.12	g : 0.12	i : 0.05	= : 0.05	a : 0.03	f : 0.01	
o : 0.98	b : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
c : 0.26	d : 0.19	e : 0.14	g : 0.12	b : 0.10	i : 0.05	= : 0.05	a : 0.03	o : 0.01	f : 0.01	
c : 0.26	d : 0.19	e : 0.14	b : 0.12	g : 0.12	i : 0.05	= : 0.05	2 : 0.01	] : 0.01	f : 0.01	
c : 0.26	d : 0.19	e : 0.15	g : 0.12	i : 0.05	= : 0.05	2 : 0.05	f : 0.03	3 : 0.03	] : 0.01	b : 0.01	
] : 0.24	d : 0.21	e : 0.15	g : 0.12	i : 0.05	= : 0.05	3 : 0.05	f : 0.03	2 : 0.03	a : 0.01	h : 0.01	
e : 0.22	c : 0.14	g : 0.12	d : 0.08	3 : 0.08	f : 0.07	] : 0.05	i : 0.05	= : 0.05	2 : 0.03	a : 0.03	h : 0.01	b : 0.01	
c : 0.15	d : 0.12	g : 0.12	e : 0.08	3 : 0.08	f : 0.07	2 : 0.07	] : 0.05	b : 0.05	i : 0.05	= : 0.05	: : 0.03	h : 0.01	a : 0.01	
c : 0.22	d : 0.14	g : 0.14	e : 0.12	3 : 0.08	b : 0.05	f : 0.05	i : 0.05	= : 0.05	2 : 0.03	h : 0.01	! : 0.01	
e : 0.17	c : 0.14	: : 0.14	d : 0.12	] : 0.08	f : 0.05	i : 0.05	3 : 0.05	= : 0.05	h : 0.01	b : 0.01	g : 0.01	4 : 0.01	! : 0.01	C : 0.01	2 : 0.01	

#score	680.9677580946252
#seq	57
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_CDS_m1_run1.txt

#BEAR
[ffffffgggggggvvvvvvvvvvvvvggggggg333ff	chr11:62285720-62285971(-)$1	251	23	62	15.9163
b[bb[bb!!ccc"""a[aooooooa]a4444ccc22bb]	chr19:49611445-49611716(+)$1	271	63	102	12.4996
)))eeeee!!bb"""cccqqqqqqqqccc4444bb333e	chr6:111136056-111136365(-)$1	309	34	73	12.4700
======="""a^^^^^^^^^^^^^^^^^^^^^^a22===	chr9:100773530-100773772(+)$1	242	14	53	19.7663
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ffffff22eee	chr1:90493039-90493329(+)$1	290	154	193	17.6071
####ggggggg[gggggggqqqqqqqqggggggg22ggg	chr11:62300306-62300605(-)$1	299	234	273	12.8826
####ggggggg[gggggggqqqqqqqqggggggg22ggg	chr11:62300140-62300427(-)$1	287	56	95	12.8826
!dddd####eeeeexxxxxxxxxxxxxxxeeeee22ddd	chr11:62286001-62286236(-)$1	235	162	201	16.6411
a####hhhhhhhh[dddd^^^^^^^^^^^^^^^^^^^^^	chr1:226349133-226349467(-)$1	334	165	204	14.8745
'''eeeee!!a[ccc[cccooooooccc]ccc]a22eee	chr17:34171875-34172138(+)$1	263	85	124	12.1847
gggggggggggg!!ccctttttttttttccc22gggggg	chr9:100774602-100774855(+)$1	253	87	126	15.9231
ccc!!dddd####ddddrrrrrrrrrddddddddccc00	chr11:62297232-62297514(-)$1	282	155	194	13.3959
cc"""============wwwwwwwwwwwwww========	chr11:62300880-62301181(-)$1	301	76	115	19.4356
$$$$$dddd[ccc[cccssssssssssccc]ccc22ddd	chr11:62291481-62291721(-)$1	240	81	120	17.4965
'''''dddd[ffffffyyyyyyyyyyyyyyyyffffffd	chr11:62284257-62284578(-)$1	321	262	301	16.9995
$$$$$eeeee^^^^^^^^^^^^^^^^^^^eeeee4444f	chr2:232319808-232320076(-)$1	268	136	175	18.9381
::a!!ffffffzzzzzzzzzzzzzzzzzffffff22a::	chr14:39649800-39650031(+)$1	231	138	177	13.8182
ccc!!dddd####ddddrrrrrrrrrddddddddccc00	chr11:62297190-62297432(-)$1	242	73	112	13.3959
$$$$$ffffffbbdddd[aooooooa]dddd]bb22fff	chr10:70101465-70101709(+)$1	244	110	149	11.7418
'''''dddd[ffffffyyyyyyyyyyyyyyyyffffffd	chr11:62284203-62284436(-)$1	233	120	159	16.9995
====]a:dddd"""eeeeesssssssssseeeee22ddd	chr11:62294507-62294760(-)$1	253	155	194	12.6897
cc[a[bb"""bbyyyyyyyyyyyyyyyybb333bb]a]c	chr9:100777550-100777862(+)$1	312	138	177	17.8058
ccc!!dddd####ddddrrrrrrrrrddddddddccc]b	chr11:62290434-62290675(-)$1	241	198	237	13.6634

#otherMatches

#Seq PSSM
ACCUGGAUGCAUCUGUUCCCAGCAUGAAGGUGCAUGCUC	chr11:62285720-62285971(-)$1	251	23	62	15.9163
gaccgcgagcacaaacggggggagcggggcagugagcgg	chr19:49611445-49611716(+)$1	271	63	102	12.4996
UGAUUUCAAGGCGAAGCUGGCGGCGGAGCGGGAGCGGGU	chr6:111136056-111136365(-)$1	309	34	73	12.4700
AUUUUUagaaggagaagaugaggaagacgaggacgauga	chr9:100773530-100773772(+)$1	242	14	53	19.7663
auuagaggaagagACAGCAAAGGAAGAACCUGCUGACUU	chr1:90493039-90493329(+)$1	290	154	193	17.6071
UCUGAGCCUUGGGUCUCCUAAACUGAAAGGAGAUAUUAA	chr11:62300306-62300605(-)$1	299	234	273	12.8826
UCUGAGCCUUGGGUCUCCUAAACUGAAAGGAGAUAUUAA	chr11:62300140-62300427(-)$1	287	56	95	12.8826
AGCUCGAAGGGCCCGAUGUUUCUCUAAAGGGGCCAGGAG	chr11:62286001-62286236(-)$1	235	162	201	16.6411
gaaaggcuucgacgggaggaagaggaaaggagacggaua	chr1:226349133-226349467(-)$1	334	165	204	14.8745
GGAGUGGUGGCGGCUAUGGAGGAGACCGAGGUGGGGGCU	chr17:34171875-34172138(+)$1	263	85	124	12.1847
UGCUAUUCUUUAGGAAGAAGAAUUUGGACUUGAUGAAGA	chr9:100774602-100774855(+)$1	253	87	126	15.9231
GCCCAAGGUAAAAAUGCCCAAGUUCAGCAUGCCUGGCUU	chr11:62297232-62297514(-)$1	282	155	194	13.3959
GCAAAGGGCUUGGACUUGGGUGGCAGAGGAGGGGUCCAA	chr11:62300880-62301181(-)$1	301	76	115	19.4356
AUGCCUGACGUGGAGCUAAAUUUGAAAAGUCCCAAAGUC	chr11:62291481-62291721(-)$1	240	81	120	17.4965
AGAAGUCCCGACUGUCCUCCUCUUCUAGCAAUGACAGUG	chr11:62284257-62284578(-)$1	321	262	301	16.9995
GACCACAAGCCACAAGGAAAGAAGACGAAGUUUGAAUAG	chr2:232319808-232320076(-)$1	268	136	175	18.9381
agcgauuguucauagugaugcagagaaagaacaggagga	chr14:39649800-39650031(+)$1	231	138	177	13.8182
GCCCAAGGUAAAAAUGCCCAAGUUCAGCAUGCCUGGCUU	chr11:62297190-62297432(-)$1	242	73	112	13.3959
GAUAUGGUACUCCUGAUGGUUUGGGUGGUUAUGGUAAGU	chr10:70101465-70101709(+)$1	244	110	149	11.7418
AGAAGUCCCGACUGUCCUCCUCUUCUAGCAAUGACAGUG	chr11:62284203-62284436(-)$1	233	120	159	16.9995
CAUUGAGGGACCAGAGGGCAAAUUGAAAGGCCCUAAGUU	chr11:62294507-62294760(-)$1	253	155	194	12.6897
agaugaugaaggagaagaugauuaagaCCCCAGAUGACC	chr9:100777550-100777862(+)$1	312	138	177	17.8058
GCCCAAGGUGAAAAUGCCCAAGUUCAGCAUGCCUGGCUU	chr11:62290434-62290675(-)$1	241	198	237	13.6634

#DB
.(((((((((((((.............)))))))...))	chr11:62285720-62285971(-)$1	1	23	62	15.9163
(.((.((..(((...(.(......).)....)))..)).	chr19:49611445-49611716(+)$1	1	63	102	12.4996
...(((((..((...(((........)))....))...)	chr6:111136056-111136365(-)$1	1	34	73	12.4700
(((((((...(......................)..)))	chr9:100773530-100773772(+)$1	1	14	53	19.7663
............................))))))..)))	chr1:90493039-90493329(+)$1	1	154	193	17.6071
....(((((((.(((((((........)))))))..)))	chr11:62300306-62300605(-)$1	1	234	273	12.8826
....(((((((.(((((((........)))))))..)))	chr11:62300140-62300427(-)$1	1	56	95	12.8826
.((((....(((((...............)))))..)))	chr11:62286001-62286236(-)$1	1	162	201	16.6411
(....((((((((.((((.....................	chr1:226349133-226349467(-)$1	1	165	204	14.8745
...(((((..(.(((.(((......))).))).)..)))	chr17:34171875-34172138(+)$1	1	85	124	12.1847
)))))(((((((..(((...........)))..))))))	chr9:100774602-100774855(+)$1	1	87	126	15.9231
(((..((((....((((.........)))))))))))..	chr11:62297232-62297514(-)$1	1	155	194	13.3959
((...((((((((((((..............))))))))	chr11:62300880-62301181(-)$1	1	76	115	19.4356
.....((((.(((.(((..........))).)))..)))	chr11:62291481-62291721(-)$1	1	81	120	17.4965
.....((((.((((((................)))))))	chr11:62284257-62284578(-)$1	1	262	301	16.9995
.....(((((...................)))))....)	chr2:232319808-232320076(-)$1	1	136	175	18.9381
..(..((((((.................))))))..)..	chr14:39649800-39650031(+)$1	1	138	177	13.8182
(((..((((....((((.........)))))))))))..	chr11:62297190-62297432(-)$1	1	73	112	13.3959
.....((((((((((((.(......).)))).))..)))	chr10:70101465-70101709(+)$1	1	110	149	11.7418
.....((((.((((((................)))))))	chr11:62284203-62284436(-)$1	1	120	159	16.9995
)))).).((((...(((((..........)))))..)))	chr11:62294507-62294760(-)$1	1	155	194	12.6897
((.(.((...((................))...)).).)	chr9:100777550-100777862(+)$1	1	138	177	17.8058
(((..((((....((((.........))))))))))).)	chr11:62290434-62290675(-)$1	1	198	237	13.6634

#PSSM
c : 0.21	' : 0.13	$ : 0.13	= : 0.08	# : 0.08	[ : 0.04	b : 0.04	) : 0.04	^ : 0.04	! : 0.04	a : 0.04	g : 0.04	: : 0.04	
c : 0.21	# : 0.13	' : 0.13	$ : 0.13	= : 0.08	f : 0.04	[ : 0.04	) : 0.04	^ : 0.04	d : 0.04	g : 0.04	: : 0.04	
# : 0.13	' : 0.13	c : 0.13	$ : 0.13	= : 0.08	f : 0.04	b : 0.04	) : 0.04	^ : 0.04	d : 0.04	g : 0.04	" : 0.04	a : 0.04	[ : 0.04	
! : 0.17	# : 0.13	$ : 0.13	e : 0.08	= : 0.08	' : 0.08	f : 0.04	b : 0.04	^ : 0.04	d : 0.04	g : 0.04	" : 0.04	a : 0.04	
! : 0.17	g : 0.13	$ : 0.13	[ : 0.08	e : 0.08	' : 0.08	f : 0.04	= : 0.04	^ : 0.04	d : 0.04	# : 0.04	" : 0.04	] : 0.04	
d : 0.26	f : 0.13	e : 0.13	g : 0.13	b : 0.08	= : 0.08	^ : 0.04	# : 0.04	h : 0.04	a : 0.04	
d : 0.26	f : 0.13	e : 0.13	g : 0.13	b : 0.08	= : 0.08	^ : 0.04	# : 0.04	h : 0.04	: : 0.04	
d : 0.30	g : 0.17	e : 0.13	" : 0.08	f : 0.08	! : 0.04	^ : 0.04	# : 0.04	h : 0.04	= : 0.04	
d : 0.30	g : 0.17	! : 0.13	" : 0.08	f : 0.08	^ : 0.04	# : 0.04	h : 0.04	= : 0.04	e : 0.04	
g : 0.17	# : 0.13	[ : 0.13	! : 0.08	" : 0.08	e : 0.08	f : 0.08	c : 0.04	^ : 0.04	h : 0.04	= : 0.04	d : 0.04	
g : 0.17	f : 0.17	# : 0.13	c : 0.08	b : 0.08	a : 0.08	^ : 0.08	e : 0.04	h : 0.04	= : 0.04	d : 0.04	
b : 0.13	^ : 0.13	[ : 0.13	# : 0.13	g : 0.08	c : 0.08	f : 0.08	e : 0.04	h : 0.04	= : 0.04	z : 0.04	" : 0.04	
g : 0.13	" : 0.13	^ : 0.13	# : 0.13	c : 0.08	f : 0.08	e : 0.04	h : 0.04	! : 0.04	= : 0.04	z : 0.04	b : 0.04	y : 0.04	
d : 0.17	g : 0.13	" : 0.13	^ : 0.13	[ : 0.08	f : 0.08	e : 0.04	c : 0.04	! : 0.04	= : 0.04	z : 0.04	y : 0.04	
d : 0.21	^ : 0.13	c : 0.13	" : 0.08	g : 0.08	f : 0.08	v : 0.04	x : 0.04	= : 0.04	z : 0.04	e : 0.04	y : 0.04	
d : 0.21	c : 0.13	^ : 0.13	g : 0.08	f : 0.08	v : 0.04	a : 0.04	x : 0.04	[ : 0.04	= : 0.04	z : 0.04	e : 0.04	y : 0.04	
d : 0.21	c : 0.17	^ : 0.13	y : 0.13	g : 0.08	v : 0.04	[ : 0.04	x : 0.04	= : 0.04	z : 0.04	e : 0.04	
^ : 0.13	r : 0.13	y : 0.13	c : 0.08	g : 0.08	v : 0.04	a : 0.04	x : 0.04	d : 0.04	t : 0.04	w : 0.04	s : 0.04	z : 0.04	[ : 0.04	e : 0.04	
^ : 0.17	r : 0.13	y : 0.13	g : 0.08	v : 0.04	o : 0.04	q : 0.04	x : 0.04	c : 0.04	t : 0.04	w : 0.04	s : 0.04	z : 0.04	a : 0.04	e : 0.04	
^ : 0.17	o : 0.13	q : 0.13	r : 0.13	y : 0.13	s : 0.08	v : 0.04	x : 0.04	t : 0.04	w : 0.04	z : 0.04	
^ : 0.17	o : 0.13	q : 0.13	r : 0.13	y : 0.13	s : 0.08	v : 0.04	x : 0.04	t : 0.04	w : 0.04	z : 0.04	
^ : 0.17	o : 0.13	q : 0.13	r : 0.13	y : 0.13	s : 0.08	v : 0.04	x : 0.04	t : 0.04	w : 0.04	z : 0.04	
^ : 0.17	o : 0.13	q : 0.13	r : 0.13	y : 0.13	s : 0.08	v : 0.04	x : 0.04	t : 0.04	w : 0.04	z : 0.04	
^ : 0.17	o : 0.13	q : 0.13	r : 0.13	y : 0.13	s : 0.08	v : 0.04	x : 0.04	t : 0.04	w : 0.04	z : 0.04	
^ : 0.17	q : 0.13	r : 0.13	y : 0.13	o : 0.08	s : 0.08	v : 0.04	a : 0.04	x : 0.04	t : 0.04	w : 0.04	z : 0.04	
^ : 0.17	q : 0.13	r : 0.13	y : 0.13	s : 0.08	v : 0.04	] : 0.04	x : 0.04	c : 0.04	t : 0.04	w : 0.04	z : 0.04	a : 0.04	
^ : 0.17	d : 0.13	y : 0.13	c : 0.08	q : 0.08	s : 0.08	v : 0.04	a : 0.04	x : 0.04	t : 0.04	w : 0.04	z : 0.04	] : 0.04	
^ : 0.17	d : 0.17	g : 0.13	c : 0.13	y : 0.13	4 : 0.04	x : 0.04	t : 0.04	w : 0.04	z : 0.04	s : 0.04	
d : 0.17	g : 0.13	c : 0.13	^ : 0.13	f : 0.08	y : 0.08	4 : 0.04	x : 0.04	] : 0.04	w : 0.04	s : 0.04	b : 0.04	
d : 0.17	g : 0.13	e : 0.13	c : 0.13	4 : 0.08	^ : 0.08	f : 0.08	y : 0.08	w : 0.04	b : 0.04	
d : 0.17	g : 0.13	e : 0.13	4 : 0.08	^ : 0.08	f : 0.08	c : 0.08	y : 0.08	w : 0.04	] : 0.04	3 : 0.04	
g : 0.13	c : 0.13	e : 0.13	d : 0.13	^ : 0.08	f : 0.08	y : 0.08	4 : 0.04	2 : 0.04	= : 0.04	] : 0.04	3 : 0.04	
f : 0.17	g : 0.13	e : 0.13	d : 0.13	c : 0.08	^ : 0.08	4 : 0.04	] : 0.04	2 : 0.04	= : 0.04	b : 0.04	3 : 0.04	
g : 0.17	f : 0.17	b : 0.13	e : 0.13	d : 0.13	c : 0.08	a : 0.08	^ : 0.04	= : 0.04	
2 : 0.47	c : 0.13	b : 0.08	f : 0.08	3 : 0.04	^ : 0.04	g : 0.04	= : 0.04	4 : 0.04	
2 : 0.47	c : 0.13	3 : 0.08	f : 0.08	^ : 0.04	g : 0.04	= : 0.04	4 : 0.04	] : 0.04	
g : 0.13	d : 0.13	c : 0.13	f : 0.13	3 : 0.08	= : 0.08	e : 0.08	a : 0.08	b : 0.04	^ : 0.04	4 : 0.04	
f : 0.17	g : 0.13	d : 0.13	= : 0.08	e : 0.08	0 : 0.08	] : 0.08	b : 0.04	3 : 0.04	^ : 0.04	4 : 0.04	: : 0.04	
d : 0.21	f : 0.13	e : 0.13	g : 0.13	= : 0.08	0 : 0.08	] : 0.04	^ : 0.04	: : 0.04	c : 0.04	b : 0.04	

#score	350.028916892265
#seq	23
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_transcript_m2_run1.txt

#BEAR
dddd[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:21731847-21732102(-)$1	255	150	188	40.4528
:::ffffff^^^^^^^^^^^^^^^^^^^^^^ffffff:	chr6:17794496-17794821(-)$1	325	43	81	33.7501
b!!a[eeeee[bb^^^^^^^^^^^^^^^^^^bb]eeee	chr22:40551833-40552109(+)$1	276	83	121	32.8182
ggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr3:10328850-10329122(+)$1	272	121	159	41.0440
$$$$$dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:76198212-76198464(+)$1	252	17	55	40.0511
gggggggeeeee^^^^^^^^^^^^^^^^^^^eeeee::	chr11:59361198-59361511(-)$1	313	250	288	33.1670
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr1:3745800-3746056(-)$1	256	143	181	39.5628
eee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr1:109823727-109823991(-)$1	264	84	122	39.5465
ggggggg^^^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr4:169923189-169923468(-)$1	279	78	116	40.2216
==========^^^^^^^^^^^^^^^^^^^^========	chr13:52997633-52997885(-)$1	252	185	223	37.7014
ddd!!ddddccc^^^^^^^^^^^^^^^^^^^^ccc]dd	chr16:85696867-85697118(+)$1	251	183	221	35.5883
e####dddd[ccc^^^^^^^^^^^^^^^^^^^ccc]dd	chr6:71247175-71247417(+)$1	242	41	79	34.2511
ggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr1:52222447-52222731(+)$1	284	125	163	41.0440
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr20:47871193-47871509(-)$1	316	98	136	39.1462
iiiiiiiii^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:50098956-50099214(+)$1	258	35	73	41.4113
e[ggggggg^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr8:17746066-17746342(-)$1	276	78	116	39.0397
:::ggggggg^^^^^^^^^^^^^^^^^^^^^ggggggg	chr2:203770478-203770739(-)$1	261	58	96	34.8216
gggffffff^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr9:107602672-107602967(-)$1	295	225	263	39.5279
cc[ggggggg^^^^^^^^^^^^^^^^^^ggggggg]cc	chr3:93691717-93691978(-)$1	261	125	163	33.8510
gggg[dddd^^^^^^^^^^^^^^^^^^^^^^dddd]gg	chrX:128618560-128618822(-)$1	262	187	225	39.2402
[ccc!!bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:2492803-2493049(+)$1	246	80	118	41.2992
ee[ggggggg^^^^^^^^^^^^^^^^^^ggggggg]ee	chr12:121768938-121769182(-)$1	244	171	209	33.5566
[ccc[dddd^^^^^^^^^^^^^^^^^^^^^^dddd]cc	chr14:59940141-59940386(-)$1	245	192	230	39.0689
gggg!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:155785735-155786029(-)$1	294	82	120	41.7921
[ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:36449800-36450065(+)$1	265	146	184	40.7890
=========^^^^^^^^^^^^^^^^^^^^^^=======	chr11:62620428-62620700(-)$1	272	43	81	39.8787
iiiii"""dddd^^^^^^^^^^^^^^^^^^^dddd]ii	chr10:101591075-101591333(+)$1	258	101	139	35.0169
iiiiiiibb^^^^^^^^^^^^^^^^^^^^^^^^^^^bb	chr9:86585682-86585940(-)$1	258	181	219	40.3700
ddd!!bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr4:83784165-83784443(-)$1	278	94	132	40.8208
ggg"""ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:47051488-47051772(-)$1	284	85	123	41.6404
bb[a[ffffff^^^^^^^^^^^^^^^^^^ffffff]a]	chr2:138724329-138724565(+)$1	236	79	117	32.7287
ffffccc^^^^^^^^^^^^^^^^^^^^^^^^^ccc]ff	chr6:170060705-170060977(-)$1	272	77	115	39.4095
)hhhhhhhh^^^^^^^^^^^^^^^^^^^^^^hhhhhhh	chr5:173376779-173377040(+)$1	261	94	132	34.6552
hhhhhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:44143951-44144243(-)$1	292	74	112	39.7710
iiiiiiiii^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr21:44525795-44526068(-)$1	273	198	236	41.4113
:ccc[dddd^^^^^^^^^^^^^^^^^^^dddd333ccc	chr17:8133093-8133403(-)$1	310	198	236	34.0830
dddd[eeeee^^^^^^^^^^^^^^^^^^^eeeeedddd	chr22:41234933-41235216(-)$1	283	219	257	33.8187
iiiiiii^^^^^^^^^^^^^^^^^^^^^^^^iiiiiii	chr4:15610693-15610972(-)$1	279	74	112	39.5129
JJggggggg^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr5:73925662-73925938(-)$1	276	202	240	36.2311
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr10:123878626-123878910(+)$1	284	69	107	39.1699
ee!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:174774822-174775099(-)$1	277	164	202	40.7771
ffff[bb[bb^^^^^^^^^^^^^^^^^^^^bb]bb22f	chr13:76412278-76412528(+)$1	250	167	205	34.8054
eeee!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:71635773-71636037(+)$1	264	76	114	41.1095
gggg!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr14:24034313-24034526(-)$1	213	44	82	41.7004
dd"""dddd^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chrX:53571033-53571275(-)$1	242	75	113	39.9495
ggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ggg	chr6:145095454-145095711(+)$1	257	7	45	41.2671
cc!!eeeee^^^^^^^^^^^^^^^^^^^^^eeeee22c	chr5:131954775-131955085(+)$1	310	234	272	37.3551
ggg::dddd^^^^^^^^^^^^^^^^^^^^^^^dddd::	chr12:26637043-26637329(-)$1	286	52	90	35.2895
hhhffffff^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr14:69345443-69345745(-)$1	302	151	189	38.9028
[ccc[eeeee^^^^^^^^^^^^^^^^^^^^eeeee]cc	chr1:215751306-215751528(+)$1	222	115	153	36.8779
===========^^^^^^^^^^^^^^^^^^^^=======	chr8:62594354-62594591(-)$1	237	4	42	37.4853
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]ee	chr10:120070681-120070947(-)$1	266	83	121	38.0464
c####dddd^^^^^^^^^^^^^^^^^^dddd]ccc333	chr5:139914166-139914487(+)$1	321	142	180	33.4016
=====^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^===	chr8:17749648-17749885(-)$1	237	32	70	41.5407
::ggggggg^^^^^^^^^^^^^^^^^^^^^ggggggge	chr7:121965511-121965774(-)$1	263	113	151	35.8602
fff!!dddd^^^^^^^^^^^^^^^^^^^^^^dddd333	chr2:152652985-152653245(-)$1	260	89	127	38.9357
ggggggg!!a^^^^^^^^^^^^^^^^^^^^^a22gggg	chr4:39907272-39907581(-)$1	309	154	192	38.8238
$hhhhhhhh^^^^^^^^^^^^^^^^^^^^^hhhhhhhh	chr12:432498-432793(-)$1	295	45	83	33.2347
$ccc[dddd^^^^^^^^^^^^^^^^^^dddd]ccc444	chr3:57627335-57627590(-)$1	255	25	63	33.3407
[ccc[a!!bb^^^^^^^^^^^^^^^^^^^^bb22accc	chr3:78696669-78696949(-)$1	280	179	217	36.5595
iiii"""dddd^^^^^^^^^^^^^^^^^^^dddd333i	chrX:119749906-119750163(+)$1	257	188	226	35.7122
=!!ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:209106734-209106989(-)$1	255	50	88	40.6590
iii####bbdddd^^^^^^^^^^^^^^^^^^dddd]bb	chr20:47605980-47606220(+)$1	240	71	109	32.5169
"eeeeeccc^^^^^^^^^^^^^^^^^^^ccc]eeeee]	chr14:55531221-55531481(+)$1	260	214	252	34.4989
eeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr1:167976008-167976276(+)$1	268	41	79	39.5827

#otherMatches

#Seq PSSM
UCAGCUUUGAUUUUUAACCUCCCUUCCCCACCCUUCCA	chr14:21731847-21732102(-)$1	255	150	188	40.4528
UUUUAAUGUUUUCUCUCUGUUCCACUCUUACACAUUGU	chr6:17794496-17794821(-)$1	325	43	81	33.7501
uguguuuugcCGAUCAACAUGUUUCCUUUUUUCUGCAG	chr22:40551833-40552109(+)$1	276	83	121	32.8182
GUAUUUUUUCUCUCAUAUGCAUAGACCUUUCUUUGAUG	chr3:10328850-10329122(+)$1	272	121	159	41.0440
UUUAAGUCCCCACAAUAAAUACACAUUUCUACAUACUG	chr1:76198212-76198464(+)$1	252	17	55	40.0511
AUUUAUAGGCAGUAUCUUUUUCUUCUCCUUUCUGCCGU	chr11:59361198-59361511(-)$1	313	250	288	33.1670
GAAGCAGAAAAACAAAAGAAAGAAGAAAUAAAAGCUUU	chr1:3745800-3746056(-)$1	256	143	181	39.5628
UCUAGUCUUUUUUCUCUCUCUCUUUGUGUUUCAGGAGU	chr1:109823727-109823991(-)$1	264	84	122	39.5465
GCuuuuuuuuuuuuuuuuuuuuuuuuuGUCCUAGGAAG	chr4:169923189-169923468(-)$1	279	78	116	40.2216
AGAAAAUUUAAAUACUCUUUUAACCAAAUGUAGAUUUU	chr13:52997633-52997885(-)$1	252	185	223	37.7014
AAGCCCGUCGCCCCCAACAAUUCAGAGCAAGCGGCAGA	chr16:85696867-85697118(+)$1	251	183	221	35.5883
AUAAUGUAUAAUAGAACCCAACAUGAAUCGAAUGUAGU	chr6:71247175-71247417(+)$1	242	41	79	34.2511
UUUUUACCUUUCCUUUAUAUUCAACUUCCCCUCCAAAA	chr1:52222447-52222731(+)$1	284	125	163	41.0440
AGUUAACCUUUGUUCUUUAUCUCACCCCUUUCCUUAGC	chr20:47871193-47871509(-)$1	316	98	136	39.1462
GCuuuuuuuuuuuuuuuuuuuuuuuuACCUCUGUCAAU	chr3:50098956-50099214(+)$1	258	35	73	41.4113
UGGAUGGUUUUUACUUCUUAAUAAAAUUAUUGACUAUU	chr8:17746066-17746342(-)$1	276	78	116	39.0397
aaauacaagaucuuauuuauucuuucaauucuuuugua	chr2:203770478-203770739(-)$1	261	58	96	34.8216
UGAACAGCUCCAGCUCCUCCACCCAAAUCUACCAGGCU	chr9:107602672-107602967(-)$1	295	225	263	39.5279
UUUAUGUCCUUAUGCCCGGAUUCAAGACAGGAUAUUGA	chr3:93691717-93691978(-)$1	261	125	163	33.8510
gaguuauaauccaguucuaucuuuauauauuuuguugc	chrX:128618560-128618822(-)$1	262	187	225	39.2402
ucucuccuuguuucucuucuccuccuuccuucucucca	chr1:2492803-2493049(+)$1	246	80	118	41.2992
UUCAGAAAGGGCAACUUAUCUUUACUUACCUUUCUUAA	chr12:121768938-121769182(-)$1	244	171	209	33.5566
cuaguccucaauucccacaugcauugaucaagaggccu	chr14:59940141-59940386(-)$1	245	192	230	39.0689
AAACUUAAGUACUUCCUCUUUAACUUUUCUUGAUCAAU	chr1:155785735-155786029(-)$1	294	82	120	41.7921
UGUACAUAUAUAACCAAUUACUUGUUUUCUCCUCCUUU	chr6:36449800-36450065(+)$1	265	146	184	40.7890
UGAGAGAUUGUAAAAUGUGACAUAGAAUGAAAGUCUCU	chr11:62620428-62620700(-)$1	272	43	81	39.8787
AUUGUAUUUCAGCAUUGUUCUAUUAUCCUUCCUGGCAC	chr10:101591075-101591333(+)$1	258	101	139	35.0169
ACUUACUGCUCAUUAUUUAAAUCAGAUUAUUCCUAUGC	chr9:86585682-86585940(-)$1	258	181	219	40.3700
CCAGCGUUUUUUCCCUUUUUCUUUUUCUUAUUCUCCAU	chr4:83784165-83784443(-)$1	278	94	132	40.8208
UCUUUCACUUCACCCAUCUUCCUACAUUUUUUCCUUCC	chr1:47051488-47051772(-)$1	284	85	123	41.6404
ucugagaaucauuuucuuucuccauuauuugauucccu	chr2:138724329-138724565(+)$1	236	79	117	32.7287
GAUUAUUGUGUAUUCUUUUCUUUUUUUCCUUAAAUCAG	chr6:170060705-170060977(-)$1	272	77	115	39.4095
UUUCUUUAGUUUUGUGCAUGAUUCCUUUCCCCUGAAGA	chr5:173376779-173377040(+)$1	261	94	132	34.6552
guguuuucuuguuguuuauuuauuuuguuucuuugugu	chr17:44143951-44144243(-)$1	292	74	112	39.7710
UAAGCUAAGAAUAAAAUAUAGAUCUCUACCAAUUAAAA	chr21:44525795-44526068(-)$1	273	198	236	41.4113
AGUGCCCAGACCCCAACCCCUAAACUUCCUGGCUUCAC	chr17:8133093-8133403(-)$1	310	198	236	34.0830
AGACUAAGAUCCUGUAUUUUACUUCUCCAAUCUUGUUU	chr22:41234933-41235216(-)$1	283	219	257	33.8187
uuauauuuuucuauuuucuuuauuauuCCUUAAUGUAA	chr4:15610693-15610972(-)$1	279	74	112	39.5129
AGUUGCAAGACUCGAAUAAAAUCUGCUGCACCUUGUAA	chr5:73925662-73925938(-)$1	276	202	240	36.2311
cuacauauauuuuuuccucuuauuucuuuuaacagucu	chr10:123878626-123878910(+)$1	284	69	107	39.1699
GACCACCUUGCCAAACAUAUUAAAACACACCAGAAUAA	chr2:174774822-174775099(-)$1	277	164	202	40.7771
GACCAAGCGACAUAACCCAUUUCCAUUCUUUCCCUAGG	chr13:76412278-76412528(+)$1	250	167	205	34.8054
GCAUUAAAUUCAAACUCAAUCUAUUUUCUCCUUCUAUU	chr2:71635773-71636037(+)$1	264	76	114	41.1095
GGAGUUUUCUCCUCAGCCCCACGACUCCUUAUCCUAUG	chr14:24034313-24034526(-)$1	213	44	82	41.7004
GGCUUGACAAAUCAUUUUCCCUACCUCUUUCCUCCUGU	chrX:53571033-53571275(-)$1	242	75	113	39.9495
CAGCAAUCAAAAUCCGAAGACUACAAAAAGCACUAUGU	chr6:145095454-145095711(+)$1	257	7	45	41.2671
gacauugguuuuauaaauuucuuaauguuugccaaccu	chr5:131954775-131955085(+)$1	310	234	272	37.3551
CAUAUGAGAUUAUUUAUAAUUGAAAAUUUGCUUCUCUC	chr12:26637043-26637329(-)$1	286	52	90	35.2895
CCAUGGGGCUCGUCCUCUCCUGCUGUCUCUGUCUGCCC	chr14:69345443-69345745(-)$1	302	151	189	38.9028
CAGGUAUUUUCACUUUAUUAAAUCUUUUAAAAAAUUCC	chr1:215751306-215751528(+)$1	222	115	153	36.8779
UGUUAAAGAAAUGAUAACAAUUGCCAAAAUUUUUUUUU	chr8:62594354-62594591(-)$1	237	4	42	37.4853
AUUUAUUUUCACUUUUUUUUUCUCCUUUGUAAUUCUUA	chr10:120070681-120070947(-)$1	266	83	121	38.0464
UCAUCCUCUUUUCCUAAUACAUUUUCCAGAGAAAGCAA	chr5:139914166-139914487(+)$1	321	142	180	33.4016
uuGUUUUCCAUCUUUAUUUUCUUUUGCUUCCUUAUAAU	chr8:17749648-17749885(-)$1	237	32	70	41.5407
CCCUGUGCCCCAAUUCUCCCUUCUAGCAAUGGUACAGC	chr7:121965511-121965774(-)$1	263	113	151	35.8602
UUAUUCUGGUUUAUUCUCUAAACAUACAGAUUCAGUGU	chr2:152652985-152653245(-)$1	260	89	127	38.9357
ugccucucucccuaucuuccuuccuuucuucGUCAGAG	chr4:39907272-39907581(-)$1	309	154	192	38.8238
GUAAAACUUCCAUUACCUUUUUUUAAAACCAAGUUUUA	chr12:432498-432793(-)$1	295	45	83	33.2347
UUCAUUGAAAAAAAAAGUAAACUAUUCUUCACUGAUUU	chr3:57627335-57627590(-)$1	255	25	63	33.3407
UUGCACUUACCCUCCUCCUUUCCAUUGUUAGUUUGGCA	chr3:78696669-78696949(-)$1	280	179	217	36.5595
CAUUAAAACUGAUAUAUAAUGAAAGAAAAACAGUGAAA	chrX:119749906-119750163(+)$1	257	188	226	35.7122
ACAAGCAGAUGAUAUCCCUAACAAAAUCAAUUUUCUUU	chr2:209106734-209106989(-)$1	255	50	88	40.6590
CUAAAACUCUGGAUGUUAUUGAAAUCUUCCUUCCAUGA	chr20:47605980-47606220(+)$1	240	71	109	32.5169
UAGAGGGCAUUCAUGAAAGAACAACUCUUGCACCUCUC	chr14:55531221-55531481(+)$1	260	214	252	34.4989
GUCCUCCCUCAUUUUUACUGAUAUCAAAGAAACGGACA	chr1:167976008-167976276(+)$1	268	41	79	39.5827

#DB
((((.((((.............................	chr14:21731847-21732102(-)$1	1	150	188	40.4528
...((((((......................)))))).	chr6:17794496-17794821(-)$1	1	43	81	33.7501
(..(.(((((.((..................)).))))	chr22:40551833-40552109(+)$1	1	83	121	32.8182
(((((.............................))))	chr3:10328850-10329122(+)$1	1	121	159	41.0440
.....((((.............................	chr1:76198212-76198464(+)$1	1	17	55	40.0511
)))))))(((((...................)))))..	chr11:59361198-59361511(-)$1	1	250	288	33.1670
(((((............................)))))	chr1:3745800-3746056(-)$1	1	143	181	39.5628
(((..............................)))))	chr1:109823727-109823991(-)$1	1	84	122	39.5465
(((((((.........................))))))	chr4:169923189-169923468(-)$1	1	78	116	40.2216
((((((((((....................))))))))	chr13:52997633-52997885(-)$1	1	185	223	37.7014
(((..(((((((....................))).))	chr16:85696867-85697118(+)$1	1	183	221	35.5883
(....((((.(((...................))).))	chr6:71247175-71247417(+)$1	1	41	79	34.2511
(((((.............................))))	chr1:52222447-52222731(+)$1	1	125	163	41.0440
((((((...........................)))))	chr20:47871193-47871509(-)$1	1	98	136	39.1462
(((((((((.............................	chr3:50098956-50099214(+)$1	1	35	73	41.4113
(.(((((((......................)))))))	chr8:17746066-17746342(-)$1	1	78	116	39.0397
...(((((((.....................)))))))	chr2:203770478-203770739(-)$1	1	58	96	34.8216
(((((((((.........................))))	chr9:107602672-107602967(-)$1	1	225	263	39.5279
((.(((((((..................))))))).))	chr3:93691717-93691978(-)$1	1	125	163	33.8510
((((.((((......................)))).))	chrX:128618560-128618822(-)$1	1	187	225	39.2402
.(((..((..............................	chr1:2492803-2493049(+)$1	1	80	118	41.2992
((.(((((((..................))))))).))	chr12:121768938-121769182(-)$1	1	171	209	33.5566
.(((.((((......................)))).))	chr14:59940141-59940386(-)$1	1	192	230	39.0689
((((..(((.............................	chr1:155785735-155786029(-)$1	1	82	120	41.7921
.((((((...............................	chr6:36449800-36450065(+)$1	1	146	184	40.7890
(((((((((......................)))))))	chr11:62620428-62620700(-)$1	1	43	81	39.8787
(((((...((((...................)))).))	chr10:101591075-101591333(+)$1	1	101	139	35.0169
)))))))((...........................))	chr9:86585682-86585940(-)$1	1	181	219	40.3700
(((..((...............................	chr4:83784165-83784443(-)$1	1	94	132	40.8208
(((...(((.............................	chr1:47051488-47051772(-)$1	1	85	123	41.6404
((.(.((((((..................)))))).).	chr2:138724329-138724565(+)$1	1	79	117	32.7287
(((((((.........................))).))	chr6:170060705-170060977(-)$1	1	77	115	39.4095
.((((((((......................)))))))	chr5:173376779-173377040(+)$1	1	94	132	34.6552
((((((((..............................	chr17:44143951-44144243(-)$1	1	74	112	39.7710
(((((((((.............................	chr21:44525795-44526068(-)$1	1	198	236	41.4113
.(((.((((...................))))...)))	chr17:8133093-8133403(-)$1	1	198	236	34.0830
((((.(((((...................)))))))))	chr22:41234933-41235216(-)$1	1	219	257	33.8187
(((((((........................)))))))	chr4:15610693-15610972(-)$1	1	74	112	39.5129
))(((((((......................)))))))	chr5:73925662-73925938(-)$1	1	202	240	36.2311
.................................)))))	chr10:123878626-123878910(+)$1	1	69	107	39.1699
((..(((((.............................	chr2:174774822-174775099(-)$1	1	164	202	40.7771
((((.((.((....................)).))..)	chr13:76412278-76412528(+)$1	1	167	205	34.8054
((((..(((.............................	chr2:71635773-71636037(+)$1	1	76	114	41.1095
((((..(((............................)	chr14:24034313-24034526(-)$1	1	44	82	41.7004
((...((((..........................)))	chrX:53571033-53571275(-)$1	1	75	113	39.9495
(((((..............................)))	chr6:145095454-145095711(+)$1	1	7	45	41.2671
((..(((((.....................)))))..)	chr5:131954775-131955085(+)$1	1	234	272	37.3551
)))..((((.......................))))..	chr12:26637043-26637329(-)$1	1	52	90	35.2895
(((((((((.........................))))	chr14:69345443-69345745(-)$1	1	151	189	38.9028
.(((.(((((....................))))).))	chr1:215751306-215751528(+)$1	1	115	153	36.8779
(((((((((((....................)))))))	chr8:62594354-62594591(-)$1	1	4	42	37.4853
...............................)))).))	chr10:120070681-120070947(-)$1	1	83	121	38.0464
(....((((..................)))).)))...	chr5:139914166-139914487(+)$1	1	142	180	33.4016
(((((..............................)))	chr8:17749648-17749885(-)$1	1	32	70	41.5407
..(((((((.....................)))))))(	chr7:121965511-121965774(-)$1	1	113	151	35.8602
(((..((((......................))))...	chr2:152652985-152653245(-)$1	1	89	127	38.9357
(((((((..(.....................)..))))	chr4:39907272-39907581(-)$1	1	154	192	38.8238
.((((((((.....................))))))))	chr12:432498-432793(-)$1	1	45	83	33.2347
.(((.((((..................)))).)))...	chr3:57627335-57627590(-)$1	1	25	63	33.3407
.(((.(..((....................))..))))	chr3:78696669-78696949(-)$1	1	179	217	36.5595
((((...((((...................))))...)	chrX:119749906-119750163(+)$1	1	188	226	35.7122
(..((((((.............................	chr2:209106734-209106989(-)$1	1	50	88	40.6590
(((....((((((..................)))).))	chr20:47605980-47606220(+)$1	1	71	109	32.5169
.((((((((...................))).))))).	chr14:55531221-55531481(+)$1	1	214	252	34.4989
((((.............................)))))	chr1:167976008-167976276(+)$1	1	41	79	39.5827

#PSSM
g : 0.18	e : 0.12	i : 0.10	d : 0.07	= : 0.07	[ : 0.07	: : 0.06	f : 0.06	$ : 0.04	c : 0.04	b : 0.03	h : 0.03	^ : 0.03	) : 0.01	J : 0.01	" : 0.01	
g : 0.18	c : 0.12	e : 0.10	i : 0.10	d : 0.07	f : 0.07	= : 0.06	h : 0.06	: : 0.04	! : 0.03	# : 0.03	^ : 0.03	$ : 0.01	[ : 0.01	b : 0.01	J : 0.01	
g : 0.23	i : 0.10	c : 0.09	e : 0.07	f : 0.07	d : 0.06	! : 0.06	= : 0.06	h : 0.06	[ : 0.04	: : 0.03	# : 0.03	^ : 0.03	$ : 0.01	" : 0.01	
g : 0.23	f : 0.12	i : 0.09	c : 0.09	! : 0.07	e : 0.06	= : 0.06	^ : 0.04	# : 0.04	h : 0.04	d : 0.03	a : 0.03	" : 0.03	$ : 0.01	: : 0.01	
g : 0.18	[ : 0.16	! : 0.10	f : 0.09	i : 0.07	e : 0.06	^ : 0.06	= : 0.06	# : 0.04	" : 0.04	h : 0.04	$ : 0.01	c : 0.01	: : 0.01	
d : 0.18	^ : 0.13	g : 0.13	f : 0.10	e : 0.09	i : 0.06	! : 0.06	= : 0.04	" : 0.04	h : 0.04	b : 0.03	c : 0.01	a : 0.01	# : 0.01	
d : 0.18	^ : 0.15	g : 0.13	f : 0.09	c : 0.09	e : 0.07	i : 0.06	= : 0.04	b : 0.04	h : 0.04	" : 0.03	! : 0.01	# : 0.01	
^ : 0.23	d : 0.20	e : 0.09	g : 0.09	f : 0.07	c : 0.07	= : 0.04	b : 0.04	h : 0.04	i : 0.03	! : 0.03	" : 0.01	[ : 0.01	
^ : 0.26	d : 0.21	e : 0.09	g : 0.09	f : 0.07	c : 0.07	b : 0.06	= : 0.04	i : 0.03	h : 0.03	! : 0.01	
^ : 0.72	e : 0.06	g : 0.04	d : 0.04	= : 0.03	b : 0.03	c : 0.01	[ : 0.01	f : 0.01	a : 0.01	
^ : 0.86	d : 0.04	c : 0.03	[ : 0.01	e : 0.01	f : 0.01	= : 0.01	
^ : 0.90	c : 0.03	d : 0.03	b : 0.01	e : 0.01	
^ : 0.95	b : 0.01	c : 0.01	d : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.96	d : 0.03	
^ : 0.90	d : 0.04	g : 0.03	c : 0.01	
^ : 0.87	d : 0.04	g : 0.03	f : 0.01	e : 0.01	c : 0.01	
^ : 0.75	d : 0.06	g : 0.04	e : 0.04	b : 0.03	= : 0.01	f : 0.01	h : 0.01	c : 0.01	
^ : 0.49	d : 0.12	g : 0.09	e : 0.06	b : 0.04	= : 0.04	] : 0.04	f : 0.03	h : 0.03	i : 0.01	a : 0.01	
^ : 0.41	d : 0.12	g : 0.10	e : 0.07	c : 0.07	= : 0.04	f : 0.03	h : 0.03	2 : 0.03	b : 0.01	3 : 0.01	i : 0.01	] : 0.01	
^ : 0.33	e : 0.13	d : 0.12	g : 0.10	c : 0.07	f : 0.04	= : 0.04	h : 0.03	2 : 0.03	] : 0.01	3 : 0.01	i : 0.01	b : 0.01	
^ : 0.27	g : 0.15	e : 0.13	d : 0.12	f : 0.07	c : 0.07	= : 0.04	h : 0.03	3 : 0.03	i : 0.01	b : 0.01	a : 0.01	
^ : 0.23	] : 0.18	g : 0.13	e : 0.10	f : 0.06	= : 0.06	d : 0.04	3 : 0.04	h : 0.03	c : 0.03	2 : 0.03	i : 0.01	4 : 0.01	
^ : 0.21	g : 0.15	e : 0.12	f : 0.07	c : 0.07	= : 0.06	d : 0.06	3 : 0.04	: : 0.03	i : 0.03	b : 0.03	h : 0.03	2 : 0.03	a : 0.01	4 : 0.01	
^ : 0.20	g : 0.13	e : 0.12	c : 0.10	f : 0.07	= : 0.06	d : 0.06	: : 0.04	i : 0.04	b : 0.03	] : 0.03	h : 0.03	3 : 0.03	4 : 0.01	

#score	2459.496595227899
#seq	65
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_transcript_m1_run2.txt

#BEAR
ggbb[iiiiiiiiinnnnniiiiiiiii]bb:ee	chr12:7076595-7076803(-)$1	208	71	105	12.8337
ccc[iiiiiiiiiqqqqqqqqiiiiiiiii333c	chr14:95999699-95999910(-)$1	211	100	134	16.3266
[iiiiiiiii"""bbmmmmbb]iiiiiiiii22b	chr2:234197224-234197448(+)$1	224	172	206	19.2780
====eeeee"""bbnnnnnbb333eeeee]====	chr17:62496827-62497048(-)$1	221	107	141	14.1461
ccc[iiiiiiiiiqqqqqqqqiiiiiiiii333c	chr14:95999710-95999936(-)$1	226	126	160	16.3266
===========[bbnnnnnbb]===========B	chr12:6619397-6619614(+)$1	217	172	206	20.3842
ccc[iiiiiiiiiqqqqqqqqiiiiiiiii333c	chr14:95999772-95999985(-)$1	213	175	209	16.3266
$$$eeeee"""cccnnnnnccc4444eeeee333	chr3:194935487-194935708(+)$1	221	78	112	10.5035
===========[bbnnnnnbb]===========B	chr12:6619448-6619662(+)$1	214	121	155	20.3842
dddiiiiiiiii[bbmmmmbb]iiiiiiiiiccc	chr4:1976324-1976531(+)$1	207	113	147	16.9079
ccc[iiiiiiiiiqqqqqqqqiiiiiiiii333c	chr14:95999642-95999857(-)$1	215	47	81	16.3266
ccc[ggggggg[bbmmmmbb333ggggggg]ccc	chr9:137029538-137029742(-)$1	204	31	65	14.0720
iiiiiiiii!!eeeeellleeeeeiiiiiiiii2	chr12:7076511-7076734(-)$1	223	89	123	13.9297
=====!!dddd[bb[a[ccc[=============	chr1:109642859-109643064(+)$1	205	41	75	14.0971
ccc[ggggggg[bbmmmmbb333ggggggg]ccc	chr9:137029525-137029738(-)$1	213	27	61	14.0720
===========[bbnnnnnbb]===========B	chr12:6619512-6619729(+)$1	217	57	91	20.3842
gggg==========oooooo==========333g	chr10:101996707-101996944(-)$1	237	58	92	19.4717
===========[bbnnnnnbb]===========B	chr12:6619530-6619766(+)$1	236	39	73	20.3842
[iiiiiiiii"""bbmmmmbb]iiiiiiiii22b	chr2:234197291-234197510(+)$1	219	105	139	19.2780
ccc[iiiiiiiiiqqqqqqqqiiiiiiiii333c	chr14:95999631-95999842(-)$1	211	32	66	16.3266
iiiii[ccc[cccooooooccc]ccc]iiiiiii	chr14:70827550-70827760(+)$1	210	119	153	14.5663
#===========ssssssssss===========b	chr14:95999691-95999899(-)$1	208	157	191	16.9121
gggg==========oooooo==========333g	chr10:101996746-101996996(-)$1	250	110	144	19.4717
=====!!dddd[bb[a[ccc[=============	chr1:109642869-109643072(+)$1	203	31	65	14.0971
=========vvvvvvvvvvvvv===========:	chr2:234197458-234197687(+)$1	229	123	157	15.2430
=========vvvvvvvvvvvvv===========:	chr2:234197411-234197624(+)$1	213	170	204	15.2430
===========[bbnnnnnbb]===========B	chr12:6619429-6619648(+)$1	219	140	174	20.3842
$a==========[bbmmmmbb]==========]a	chr4:1976291-1976494(+)$1	203	146	180	19.4298
eee"""iiiiiiiiillliiiiiiiii]eeeee:	chr7:98479293-98479497(+)$1	204	2	36	12.7165
====="""ccccccmmmmccc]ccc333======	chr7:53843822-53844051(+)$1	229	124	158	14.2456
===========[bbnnnnnbb]===========B	chr12:6619462-6619685(+)$1	223	107	141	20.3842
ccc[iiiiiiiiiqqqqqqqqiiiiiiiii333c	chr14:95999657-95999868(-)$1	211	58	92	16.3266
===========[bbnnnnnbb]===========B	chr12:6619414-6619623(+)$1	209	155	189	20.3842
[iiiiiiiii"""bbmmmmbb]iiiiiiiii22b	chr2:234197322-234197539(+)$1	217	74	108	19.2780
##ggggggg"""cccmmmmccc4444ggggggge	chr15:66639505-66639717(-)$1	212	170	204	12.9471
==========vvvvvvvvvvvvv==========2	chr2:97533543-97533808(-)$1	265	39	73	15.3856
===========ssssssssss===========::	chr14:95999623-95999831(-)$1	208	90	124	15.3522
=======[eeeeeooooooeeeee==========	chr14:36231903-36232114(-)$1	211	134	168	15.5064
[iiiiiiiii"""bbmmmmbb]iiiiiiiii22b	chr2:234197258-234197474(+)$1	216	138	172	19.2780
========[bbqqqqqqqqbb]==========cc	chr6:43745805-43746063(+)$1	258	170	204	15.7720
iiiiiii!!a[cccoooooocccaiiiiiiiii3	chr16:89976840-89977113(+)$1	273	229	263	16.2861
[iiiiiiiii"""bbmmmmbb]iiiiiiiii22b	chr2:234197348-234197558(+)$1	210	48	82	19.2780
$a==========[bbmmmmbb]==========]a	chr4:1976302-1976514(+)$1	212	135	169	19.4298
dd============oooooo============GG	chr5:27484896-27485120(+)$1	224	179	213	17.8981
ggg!!==========mmmm==========]gggg	chr4:53578773-53579013(+)$1	240	90	124	17.2328
===========[bbnnnnnbb]===========A	chr12:6619569-6619777(+)$1	208	0	34	20.2934
ccc[iiiiiiiiiqqqqqqqqiiiiiiiii333c	chr14:95999685-95999891(-)$1	206	81	115	16.3266
ccc[ggggggg[bbmmmmbb333ggggggg]ccc	chr9:137029547-137029750(-)$1	203	39	73	14.0720
[iiiiiiiii"""bbmmmmbb]iiiiiiiii22b	chr2:234197310-234197522(+)$1	212	86	120	19.2780
[iiiiiiiii"""bbmmmmbb]iiiiiiiii22b	chr2:234197358-234197569(+)$1	211	38	72	19.2780

#otherMatches

#Seq PSSM
CUCUGGCCCUUGGCUCCUUGUUGGGGGUGGGGAC	chr12:7076595-7076803(-)$1	208	71	105	12.8337
CGGUGAUAAUGACUGGGCUAUGUCAUUAUCUAUC	chr14:95999699-95999910(-)$1	211	100	134	16.3266
CUCCAUCGCACUUCAGAAGUGCUGCGAUGGGCAG	chr2:234197224-234197448(+)$1	224	172	206	19.2780
UGUGCAAAACUCCGUACAUUGCUAUUUUGCCACA	chr17:62496827-62497048(-)$1	221	107	141	14.1461
CGGUGAUAAUGACUGGGCUAUGUCAUUAUCUAUC	chr14:95999710-95999936(-)$1	226	126	160	16.3266
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619397-6619614(+)$1	217	172	206	20.3842
CGGUGAUAAUGACUGGGCUAUGUCAUUAUCUAUC	chr14:95999772-95999985(-)$1	213	175	209	16.3266
uuagcauggccccugcgcaaggaugacaugcaaa	chr3:194935487-194935708(+)$1	221	78	112	10.5035
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619448-6619662(+)$1	214	121	155	20.3842
GGGGUGUCCUGUCUCAGUGGACACAGGACACCAC	chr4:1976324-1976531(+)$1	207	113	147	16.9079
CGGUGAUAAUGACUGGGCUAUGUCAUUAUCUAUC	chr14:95999642-95999857(-)$1	215	47	81	16.3266
AUAAAGUGCGCAGGGAAGCCGAGGCGUGUUGUAU	chr9:137029538-137029742(-)$1	204	31	65	14.0720
GUAAGGCCAGAUCAAUAGCAUUGGUGGCCUUGCC	chr12:7076511-7076734(-)$1	223	89	123	13.9297
AGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUUG	chr1:109642859-109643064(+)$1	205	41	75	14.0971
AUAAAGUGCGCAGGGAAGCCGAGGCGUGUUGUAU	chr9:137029525-137029738(-)$1	213	27	61	14.0720
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619512-6619729(+)$1	217	57	91	20.3842
CUUACAGACAGGCUGACACAGGCUUGUCUGGCCU	chr10:101996707-101996944(-)$1	237	58	92	19.4717
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619530-6619766(+)$1	236	39	73	20.3842
CUCCAUCGCACUUCAGAAGUGCUGCGAUGGGCAG	chr2:234197291-234197510(+)$1	219	105	139	19.2780
CGGUGAUAAUGACUGGGCUAUGUCAUUAUCUAUC	chr14:95999631-95999842(-)$1	211	32	66	16.3266
ugacacauucucuauccaaggaaaauauguuaaa	chr14:70827550-70827760(+)$1	210	119	153	14.5663
UUGUUUAGCAGAUGGAGUGUUUUCUGUUGAACAC	chr14:95999691-95999899(-)$1	208	157	191	16.9121
CUUACAGACAGGCUGACACAGGCUUGUCUGGCCU	chr10:101996746-101996996(-)$1	250	110	144	19.4717
AGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUUG	chr1:109642869-109643072(+)$1	203	31	65	14.0971
AGACCUCUGAUUGAAAAUCCCCCAGGGGUUUUAA	chr2:234197458-234197687(+)$1	229	123	157	15.2430
AGACCUCUGAUUGAAAAUCCCCCAGGGGUUUUAA	chr2:234197411-234197624(+)$1	213	170	204	15.2430
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619429-6619648(+)$1	219	140	174	20.3842
GGGGUGUCCUGUCUCAGUGGACACAGGACACCAC	chr4:1976291-1976494(+)$1	203	146	180	19.4298
UUUCCUUUUCUCUACCUUGUAGAGAAGCAAAGUG	chr7:98479293-98479497(+)$1	204	2	36	12.7165
gUUGAAAAUAAUAUACAUAUGCUUAAUGUUGACC	chr7:53843822-53844051(+)$1	229	124	158	14.2456
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619462-6619685(+)$1	223	107	141	20.3842
CGGUGAUAAUGACUGGGCUAUGUCAUUAUCUAUC	chr14:95999657-95999868(-)$1	211	58	92	16.3266
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619414-6619623(+)$1	209	155	189	20.3842
CUCCAUCGCACUUCAGAAGUGCUGCGAUGGGCAG	chr2:234197322-234197539(+)$1	217	74	108	19.2780
AUGUUUGUUUUUGUUUUUUAACUUUUAACAGAUG	chr15:66639505-66639717(-)$1	212	170	204	12.9471
CGGGGCUCCUGGAAGGCCUGAUGAGGAGUCCUGU	chr2:97533543-97533808(-)$1	265	39	73	15.3856
UGUUUAGCAGAUGGAGUGUUUUCUGUUGAACACU	chr14:95999623-95999831(-)$1	208	90	124	15.3522
AAAAUCAUAUUUUCUUUUCAGGAUUGAUUUUAAA	chr14:36231903-36232114(-)$1	211	134	168	15.5064
CUCCAUCGCACUUCAGAAGUGCUGCGAUGGGCAG	chr2:234197258-234197474(+)$1	216	138	172	19.2780
GCCUCAAGUGGAACAAGGGCUCCUUGAGGCCAGC	chr6:43745805-43746063(+)$1	258	170	204	15.7720
AGGUAGGUUGAGCUCGUCCCAGCCCCUGCCUCCC	chr16:89976840-89977113(+)$1	273	229	263	16.2861
CUCCAUCGCACUUCAGAAGUGCUGCGAUGGGCAG	chr2:234197348-234197558(+)$1	210	48	82	19.2780
GGGGUGUCCUGUCUCAGUGGACACAGGACACCAC	chr4:1976302-1976514(+)$1	212	135	169	19.4298
AGGAAAAGCAUAAGUACUGCUUUAUGCUUUUCUU	chr5:27484896-27485120(+)$1	224	179	213	17.8981
cccggggggcgggcggcggugcccgucccggggc	chr4:53578773-53579013(+)$1	240	90	124	17.2328
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGGAG	chr12:6619569-6619777(+)$1	208	0	34	20.2934
CGGUGAUAAUGACUGGGCUAUGUCAUUAUCUAUC	chr14:95999685-95999891(-)$1	206	81	115	16.3266
AUAAAGUGCGCAGGGAAGCCGAGGCGUGUUGUAU	chr9:137029547-137029750(-)$1	203	39	73	14.0720
CUCCAUCGCACUUCAGAAGUGCUGCGAUGGGCAG	chr2:234197310-234197522(+)$1	212	86	120	19.2780
CUCCAUCGCACUUCAGAAGUGCUGCGAUGGGCAG	chr2:234197358-234197569(+)$1	211	38	72	19.2780

#DB
))((.(((((((((.....))))))))).)).((	chr12:7076595-7076803(-)$1	1	71	105	12.8337
(((.(((((((((........)))))))))...)	chr14:95999699-95999910(-)$1	1	100	134	16.3266
.(((((((((...((....)).)))))))))..)	chr2:234197224-234197448(+)$1	1	172	206	19.2780
(((((((((...((.....))...))))).))))	chr17:62496827-62497048(-)$1	1	107	141	14.1461
(((.(((((((((........)))))))))...)	chr14:95999710-95999936(-)$1	1	126	160	16.3266
(((((((((((.((.....)).))))))))))))	chr12:6619397-6619614(+)$1	1	172	206	20.3842
(((.(((((((((........)))))))))...)	chr14:95999772-95999985(-)$1	1	175	209	16.3266
...(((((...(((.....)))....)))))...	chr3:194935487-194935708(+)$1	1	78	112	10.5035
(((((((((((.((.....)).))))))))))))	chr12:6619448-6619662(+)$1	1	121	155	20.3842
)))(((((((((.((....)).)))))))))(((	chr4:1976324-1976531(+)$1	1	113	147	16.9079
(((.(((((((((........)))))))))...)	chr14:95999642-95999857(-)$1	1	47	81	16.3266
(((.(((((((.((....))...))))))).)))	chr9:137029538-137029742(-)$1	1	31	65	14.0720
(((((((((..(((((...)))))))))))))).	chr12:7076511-7076734(-)$1	1	89	123	13.9297
(((((..((((.((.(.(((.(((((((((((((	chr1:109642859-109643064(+)$1	1	41	75	14.0971
(((.(((((((.((....))...))))))).)))	chr9:137029525-137029738(-)$1	1	27	61	14.0720
(((((((((((.((.....)).))))))))))))	chr12:6619512-6619729(+)$1	1	57	91	20.3842
((((((((((((((......))))))))))...)	chr10:101996707-101996944(-)$1	1	58	92	19.4717
(((((((((((.((.....)).))))))))))))	chr12:6619530-6619766(+)$1	1	39	73	20.3842
.(((((((((...((....)).)))))))))..)	chr2:234197291-234197510(+)$1	1	105	139	19.2780
(((.(((((((((........)))))))))...)	chr14:95999631-95999842(-)$1	1	32	66	16.3266
(((((.(((.(((......))).))).)))))))	chr14:70827550-70827760(+)$1	1	119	153	14.5663
.(((((((((((..........))))))))))))	chr14:95999691-95999899(-)$1	1	157	191	16.9121
((((((((((((((......))))))))))...)	chr10:101996746-101996996(-)$1	1	110	144	19.4717
(((((..((((.((.(.(((.(((((((((((((	chr1:109642869-109643072(+)$1	1	31	65	14.0971
(((((((((.............))))))))))).	chr2:234197458-234197687(+)$1	1	123	157	15.2430
(((((((((.............))))))))))).	chr2:234197411-234197624(+)$1	1	170	204	15.2430
(((((((((((.((.....)).))))))))))))	chr12:6619429-6619648(+)$1	1	140	174	20.3842
.(((((((((((.((....)).)))))))))).)	chr4:1976291-1976494(+)$1	1	146	180	19.4298
(((...(((((((((...))))))))).))))).	chr7:98479293-98479497(+)$1	1	2	36	12.7165
(((((...((((((....))).)))...))))))	chr7:53843822-53844051(+)$1	1	124	158	14.2456
(((((((((((.((.....)).))))))))))))	chr12:6619462-6619685(+)$1	1	107	141	20.3842
(((.(((((((((........)))))))))...)	chr14:95999657-95999868(-)$1	1	58	92	16.3266
(((((((((((.((.....)).))))))))))))	chr12:6619414-6619623(+)$1	1	155	189	20.3842
.(((((((((...((....)).)))))))))..)	chr2:234197322-234197539(+)$1	1	74	108	19.2780
..(((((((...(((....)))....))))))))	chr15:66639505-66639717(-)$1	1	170	204	12.9471
((((((((((.............)))))))))).	chr2:97533543-97533808(-)$1	1	39	73	15.3856
(((((((((((..........)))))))))))..	chr14:95999623-95999831(-)$1	1	90	124	15.3522
(((((((.(((((......)))))))))))))))	chr14:36231903-36232114(-)$1	1	134	168	15.5064
.(((((((((...((....)).)))))))))..)	chr2:234197258-234197474(+)$1	1	138	172	19.2780
((((((((.((........)).))))))))))))	chr6:43745805-43746063(+)$1	1	170	204	15.7720
(((((((..(.(((......))))))))))))).	chr16:89976840-89977113(+)$1	1	229	263	16.2861
.(((((((((...((....)).)))))))))..)	chr2:234197348-234197558(+)$1	1	48	82	19.2780
.(((((((((((.((....)).)))))))))).)	chr4:1976302-1976514(+)$1	1	135	169	19.4298
))((((((((((((......))))))))))))))	chr5:27484896-27485120(+)$1	1	179	213	17.8981
(((..((((((((((....)))))))))).))))	chr4:53578773-53579013(+)$1	1	90	124	17.2328
(((((((((((.((.....)).)))))))))))(	chr12:6619569-6619777(+)$1	1	0	34	20.2934
(((.(((((((((........)))))))))...)	chr14:95999685-95999891(-)$1	1	81	115	16.3266
(((.(((((((.((....))...))))))).)))	chr9:137029547-137029750(-)$1	1	39	73	14.0720
.(((((((((...((....)).)))))))))..)	chr2:234197310-234197522(+)$1	1	86	120	19.2780
.(((((((((...((....)).)))))))))..)	chr2:234197358-234197569(+)$1	1	38	72	19.2780

#PSSM
= : 0.36	c : 0.19	[ : 0.14	g : 0.08	$ : 0.06	i : 0.06	d : 0.04	# : 0.04	e : 0.02	
= : 0.38	c : 0.19	i : 0.19	g : 0.08	d : 0.04	a : 0.04	$ : 0.02	e : 0.02	# : 0.02	
= : 0.44	c : 0.19	i : 0.19	g : 0.08	b : 0.02	$ : 0.02	d : 0.02	e : 0.02	
= : 0.44	i : 0.21	[ : 0.19	g : 0.06	b : 0.02	e : 0.02	" : 0.02	! : 0.02	
= : 0.46	i : 0.36	g : 0.08	e : 0.04	[ : 0.02	" : 0.02	! : 0.02	
= : 0.42	i : 0.36	g : 0.08	e : 0.04	! : 0.04	" : 0.04	[ : 0.02	
= : 0.42	i : 0.38	g : 0.08	e : 0.04	! : 0.04	c : 0.02	" : 0.02	
= : 0.40	i : 0.36	g : 0.08	e : 0.04	d : 0.04	c : 0.02	" : 0.02	[ : 0.02	! : 0.02	
= : 0.38	i : 0.36	g : 0.08	e : 0.04	d : 0.04	c : 0.04	" : 0.02	[ : 0.02	! : 0.02	
i : 0.34	= : 0.34	" : 0.06	g : 0.06	d : 0.04	v : 0.04	! : 0.02	[ : 0.02	c : 0.02	e : 0.02	b : 0.02	a : 0.02	
= : 0.32	i : 0.19	" : 0.19	g : 0.06	v : 0.06	d : 0.04	c : 0.04	! : 0.02	e : 0.02	b : 0.02	[ : 0.02	
[ : 0.25	i : 0.19	" : 0.18	= : 0.14	c : 0.08	v : 0.06	e : 0.04	s : 0.02	q : 0.02	
b : 0.27	i : 0.18	" : 0.14	c : 0.10	= : 0.08	[ : 0.06	v : 0.06	e : 0.04	s : 0.04	q : 0.02	
b : 0.48	q : 0.16	c : 0.08	= : 0.08	v : 0.06	i : 0.04	o : 0.04	s : 0.04	e : 0.02	
n : 0.21	b : 0.19	q : 0.16	o : 0.12	m : 0.08	v : 0.06	[ : 0.04	s : 0.04	e : 0.02	i : 0.02	c : 0.02	= : 0.02	
m : 0.32	n : 0.21	q : 0.16	o : 0.12	v : 0.06	a : 0.04	s : 0.04	e : 0.02	l : 0.02	
m : 0.32	n : 0.21	q : 0.16	o : 0.12	v : 0.06	l : 0.04	[ : 0.04	s : 0.04	
m : 0.32	n : 0.21	q : 0.16	o : 0.12	v : 0.06	l : 0.04	c : 0.04	s : 0.04	
m : 0.23	n : 0.21	q : 0.16	o : 0.12	b : 0.06	c : 0.06	v : 0.06	s : 0.04	l : 0.02	i : 0.02	
b : 0.46	q : 0.14	c : 0.12	o : 0.08	v : 0.06	i : 0.04	e : 0.04	s : 0.04	= : 0.02	
b : 0.40	q : 0.14	c : 0.10	= : 0.08	3 : 0.06	v : 0.06	i : 0.04	e : 0.04	[ : 0.04	s : 0.04	
] : 0.40	i : 0.18	= : 0.14	3 : 0.08	c : 0.08	v : 0.06	e : 0.04	s : 0.02	
= : 0.42	i : 0.34	3 : 0.08	4 : 0.04	e : 0.04	c : 0.04	] : 0.02	v : 0.02	
= : 0.44	i : 0.34	g : 0.06	4 : 0.04	e : 0.04	c : 0.04	3 : 0.02	a : 0.02	
= : 0.46	i : 0.38	g : 0.06	4 : 0.04	c : 0.04	e : 0.02	
= : 0.46	i : 0.38	g : 0.06	4 : 0.04	e : 0.02	c : 0.02	3 : 0.02	
= : 0.46	i : 0.38	g : 0.08	e : 0.04	] : 0.02	3 : 0.02	
= : 0.46	i : 0.38	g : 0.08	e : 0.04	] : 0.02	3 : 0.02	
= : 0.48	i : 0.36	g : 0.08	e : 0.06	] : 0.02	
= : 0.46	i : 0.36	g : 0.08	] : 0.04	e : 0.04	b : 0.02	
= : 0.44	i : 0.21	3 : 0.18	] : 0.06	e : 0.04	g : 0.04	b : 0.02	
= : 0.44	3 : 0.19	2 : 0.14	c : 0.08	i : 0.06	g : 0.04	: : 0.02	e : 0.02	
= : 0.34	3 : 0.19	2 : 0.14	c : 0.10	i : 0.06	e : 0.04	] : 0.04	g : 0.04	: : 0.02	G : 0.02	
c : 0.23	b : 0.16	B : 0.14	= : 0.10	: : 0.08	g : 0.06	e : 0.04	3 : 0.04	2 : 0.04	a : 0.04	i : 0.02	G : 0.02	A : 0.02	

#score	844.05850345154
#seq	50
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_CDS_m2_run2.txt

#BEAR
eecccrrrrrrrrrccc]	chr6:26021825-26022085(+)$1	260	179	197	7.7434
eeeeeqqqqqqqqeeeee	chr17:26902392-26902664(-)$1	272	218	236	13.8273
:ddddqqqqqqqqdddd:	chr12:56510477-56510683(+)$1	206	41	59	11.8242
eeeeeqqqqqqqqeeeee	chr11:67351833-67352041(+)$1	208	127	145	13.8273
:ddddqqqqqqqqdddd:	chr7:54825116-54825362(-)$1	246	160	178	11.8242
fffffqqqqqqqqfffff	chr6:27100350-27100637(-)$1	287	92	110	12.2074
eeeeeqqqqqqqqeeeee	chr12:8088512-8088867(-)$1	355	187	205	13.8273
eeeeeqqqqqqqqeeeee	chr3:40498729-40498955(+)$1	226	9	27	13.8273
fffffqqqqqqqqfffff	chr15:90777004-90777263(-)$1	259	98	116	12.2074
gddddrrrrrrrrrdddd	chr12:6976647-6976905(+)$1	258	12	30	7.7614
bddddqqqqqqqqdddd6	chr12:57066704-57066950(-)$1	246	177	195	12.7190
gggggqqqqqqqqggggg	chr4:39460409-39460618(-)$1	209	15	33	12.8344
""cccqqqqqqqqcccdd	chr19:36142034-36142264(+)$1	230	184	202	13.1714
d[cccqqqqqqqqccc]d	chr11:67351534-67351741(+)$1	207	46	64	13.0552
eeeeeqqqqqqqqeeeee	chr19:50000350-50000565(+)$1	215	131	149	13.8273
fffffqqqqqqqqfffff	chr15:66797025-66797283(-)$1	258	221	239	12.2074
""cccqqqqqqqqccc]=	chr6:27860776-27861050(-)$1	274	11	29	13.1215
eeeeeqqqqqqqqeeeee	chr11:67351841-67352102(+)$1	261	119	137	13.8273
eeeerrrrrrrrreeeee	chr1:45478473-45478722(+)$1	249	168	186	8.2251
[ddddqqqqqqqqdddd]	chr10:75541713-75542002(+)$1	289	227	245	13.5466
fffffqqqqqqqqfffff	chr5:81573552-81573772(-)$1	220	82	100	12.2074
!ddddqqqqqqqqdddd2	chr12:112846355-112846560(-)$1	205	2	20	13.4148
ggggaqqqqqqqqa]ggg	chr11:64084824-64085089(-)$1	265	210	228	12.8404
Fddddqqqqqqqqdddd:	chr11:32605279-32605544(+)$1	265	169	187	12.3424
:ddddqqqqqqqqddddc	chr15:66795738-66795962(-)$1	224	80	98	12.5645
eeeeeqqqqqqqqeeeee	chr12:56510457-56510677(+)$1	220	12	30	13.8273
fffffqqqqqqqqfffff	chr6:27835150-27835448(-)$1	298	16	34	12.2074
eeeeeqqqqqqqqeeeee	chr11:75110463-75110722(+)$1	259	150	168	13.8273
eeeeeqqqqqqqqeeeee	chr1:110950151-110950415(-)$1	264	29	47	13.8273
Gddddqqqqqqqqdddd:	chr19:8386439-8386677(+)$1	238	24	42	12.2415
eeeeeqqqqqqqqeeeee	chr7:10979563-10979855(-)$1	292	28	46	13.8273
gggggqqqqqqqqggggg	chr1:228645377-228645637(-)$1	260	183	201	12.8344
ddd[aqqqqqqqqa]ddd	chr1:111991988-111992304(+)$1	316	294	312	12.8698
hhhhaqqqqqqqqa]hhh	chr5:68462855-68463201(+)$1	346	134	152	11.6403
eeeeeqqqqqqqqeeeee	chr6:26158312-26158602(+)$1	290	264	282	13.8273
!!cccqqqqqqqqccc]b	chr6:26285544-26285845(-)$1	301	123	141	13.1602
!!cccqqqqqqqqcccdd	chr8:126010673-126010976(+)$1	303	115	133	13.4089
cccbbqqqqqqqqbb]cc	chr7:22862287-22862557(-)$1	270	13	31	11.8541
eeeerrrrrrrrreeeee	chr15:40331192-40331460(-)$1	268	100	118	8.2251
eeeerrrrrrrrreeeee	chr6:144416512-144416800(-)$1	288	222	240	8.2251
!ddddqqqqqqqqdddd2	chr1:46769271-46769546(+)$1	275	154	172	13.4148
ddcccqqqqqqqqccc>>	chr19:49999594-49999824(+)$1	230	21	39	12.7043
h!!bbqqqqqqqqbbhhh	chr11:17099065-17099318(-)$1	253	57	75	11.4378
c[cccqqqqqqqqccc]c	chr8:74205736-74205964(-)$1	228	28	46	13.1855
!!cccqqqqqqqqccc22	chr9:113018606-113018926(-)$1	320	221	239	13.0318
cddddqqqqqqqqdddd:	chr12:6976600-6976847(+)$1	247	221	239	12.6384
###bbqqqqqqqqbb22e	chr1:149858072-149858325(-)$1	253	38	56	11.2842
:ddddqqqqqqqqdddd:	chr10:7830042-7830320(+)$1	278	174	192	11.8242
c!!bbqqqqqqqqbbccc	chr17:56429328-56429653(-)$1	325	73	91	12.0974

#otherMatches

#Seq PSSM
GGCCAUCCGGCGUCUGGC	chr6:26021825-26022085(+)$1	260	179	197	7.7434
GUCUGUAGGUAAGUGGAC	chr17:26902392-26902664(-)$1	272	218	236	13.8273
CACAGCAAACUAACUGUA	chr12:56510477-56510683(+)$1	206	41	59	11.8242
CUGGCAGAUCAGGGCCAG	chr11:67351833-67352041(+)$1	208	127	145	13.8273
AACCUGAUAGAAAAGGUA	chr7:54825116-54825362(-)$1	246	160	178	11.8242
AUAGCUACACAGUGCUAU	chr6:27100350-27100637(-)$1	287	92	110	12.2074
UCUGGAAUCACCCCUAGA	chr12:8088512-8088867(-)$1	355	187	205	13.8273
gcacCAACCAAUCGGUGC	chr3:40498729-40498955(+)$1	226	9	27	13.8273
UGUCUGCGUCUCGAGGCG	chr15:90777004-90777263(-)$1	259	98	116	12.2074
CGCUCUAUAUAAGUGGGC	chr12:6976647-6976905(+)$1	258	12	30	7.7614
GUUAAUGUAAAUUUUGAA	chr12:57066704-57066950(-)$1	246	177	195	12.7190
CGUCGCGCACUCAUGACG	chr4:39460409-39460618(-)$1	209	15	33	12.8344
ACCAGACUAGAAACUGCU	chr19:36142034-36142264(+)$1	230	184	202	13.1714
CAAACUUUUCUUUGUUCG	chr11:67351534-67351741(+)$1	207	46	64	13.0552
UCUUUCAAAACAAGAAGA	chr19:50000350-50000565(+)$1	215	131	149	13.8273
GGUUCGGAGCAUAGAAUC	chr15:66797025-66797283(-)$1	258	221	239	12.2074
AAGCUUAGCCAAUGGCCC	chr6:27860776-27861050(-)$1	274	11	29	13.1215
CUGGCAGAUCAGGGCCAG	chr11:67351841-67352102(+)$1	261	119	137	13.8273
AGACUACACUCCCGUUUG	chr1:45478473-45478722(+)$1	249	168	186	8.2251
GCGCCGGGAGAAGGGCGG	chr10:75541713-75542002(+)$1	289	227	245	13.5466
UAAAAUAUUUAAUUUUUA	chr5:81573552-81573772(-)$1	220	82	100	12.2074
CUGGGGAGCCCAGCCCAU	chr12:112846355-112846560(-)$1	205	2	20	13.4148
GGGCCGGGGUCCAGUGCU	chr11:64084824-64085089(-)$1	265	210	228	12.8404
UUCAUCGACAUCAGUGAA	chr11:32605279-32605544(+)$1	265	169	187	12.3424
UGUCUUUUUCUUUAGGCG	chr15:66795738-66795962(-)$1	224	80	98	12.5645
GGAUUCCGUGUACAAUCC	chr12:56510457-56510677(+)$1	220	12	30	13.8273
AUUGGACGCUCCACCAAU	chr6:27835150-27835448(-)$1	298	16	34	12.2074
AGAGGAAGGUGAGCCUCU	chr11:75110463-75110722(+)$1	259	150	168	13.8273
CGCGGACGUUGCACCGUG	chr1:110950151-110950415(-)$1	264	29	47	13.8273
GGCCCGAAUUUGGGGGCA	chr19:8386439-8386677(+)$1	238	24	42	12.2415
GCCCUCCCAGCCAAGGGU	chr7:10979563-10979855(-)$1	292	28	46	13.8273
CGGGGCUGCAGUUCCCCG	chr1:228645377-228645637(-)$1	260	183	201	12.8344
GGCGCAGCGACACGGGCC	chr1:111991988-111992304(+)$1	316	294	312	12.8698
GGAACGGCUGUUGGUUUC	chr5:68462855-68463201(+)$1	346	134	152	11.6403
GGGGAUCAUGAAUUCCUU	chr6:26158312-26158602(+)$1	290	264	282	13.8273
UGGCCGUGGUAAAGGUGG	chr6:26285544-26285845(-)$1	301	123	141	13.1602
UACUCUGGUUACUGGGGC	chr8:126010673-126010976(+)$1	303	115	133	13.4089
AGGCGAUGAAUUACGACC	chr7:22862287-22862557(-)$1	270	13	31	11.8541
UGCUAGGGGCUUAAGCGG	chr15:40331192-40331460(-)$1	268	100	118	8.2251
CGGCACGGGCCACGCCGA	chr6:144416512-144416800(-)$1	288	222	240	8.2251
ACCGUAGCCAGACAUGGG	chr1:46769271-46769546(+)$1	275	154	172	13.4148
UGCGUUUCUCCUUACGUC	chr19:49999594-49999824(+)$1	230	21	39	12.7043
CUUCCUGCGUGUUGGGUG	chr11:17099065-17099318(-)$1	253	57	75	11.4378
AAGACACCUAUGAGUCGU	chr8:74205736-74205964(-)$1	228	28	46	13.1855
AGAUCGAGAGCAAGGUAC	chr9:113018606-113018926(-)$1	320	221	239	13.0318
CGGCCAAGGUGCCGGCCG	chr12:6976600-6976847(+)$1	247	221	239	12.6384
GGAGCCCUAAUUUGCAUA	chr1:149858072-149858325(-)$1	253	38	56	11.2842
AGCCGCAAUGGUAUGGCA	chr10:7830042-7830320(+)$1	278	174	192	11.8242
CAUUCUGGGUAACGAGCU	chr17:56429328-56429653(-)$1	325	73	91	12.0974

#DB
(((((.........))).	chr6:26021825-26022085(+)$1	1	179	197	7.7434
(((((........)))))	chr17:26902392-26902664(-)$1	1	218	236	13.8273
.((((........)))).	chr12:56510477-56510683(+)$1	1	41	59	11.8242
(((((........)))))	chr11:67351833-67352041(+)$1	1	127	145	13.8273
.((((........)))).	chr7:54825116-54825362(-)$1	1	160	178	11.8242
(((((........)))))	chr6:27100350-27100637(-)$1	1	92	110	12.2074
(((((........)))))	chr12:8088512-8088867(-)$1	1	187	205	13.8273
(((((........)))))	chr3:40498729-40498955(+)$1	1	9	27	13.8273
(((((........)))))	chr15:90777004-90777263(-)$1	1	98	116	12.2074
(((((.........))))	chr12:6976647-6976905(+)$1	1	12	30	7.7614
(((((........)))).	chr12:57066704-57066950(-)$1	1	177	195	12.7190
(((((........)))))	chr4:39460409-39460618(-)$1	1	15	33	12.8344
..(((........)))))	chr19:36142034-36142264(+)$1	1	184	202	13.1714
(.(((........))).)	chr11:67351534-67351741(+)$1	1	46	64	13.0552
(((((........)))))	chr19:50000350-50000565(+)$1	1	131	149	13.8273
(((((........)))))	chr15:66797025-66797283(-)$1	1	221	239	12.2074
..(((........))).)	chr6:27860776-27861050(-)$1	1	11	29	13.1215
(((((........)))))	chr11:67351841-67352102(+)$1	1	119	137	13.8273
((((.........)))))	chr1:45478473-45478722(+)$1	1	168	186	8.2251
.((((........)))).	chr10:75541713-75542002(+)$1	1	227	245	13.5466
(((((........)))))	chr5:81573552-81573772(-)$1	1	82	100	12.2074
.((((........)))).	chr12:112846355-112846560(-)$1	1	2	20	13.4148
(((((........).)))	chr11:64084824-64085089(-)$1	1	210	228	12.8404
)((((........)))).	chr11:32605279-32605544(+)$1	1	169	187	12.3424
.((((........))))(	chr15:66795738-66795962(-)$1	1	80	98	12.5645
(((((........)))))	chr12:56510457-56510677(+)$1	1	12	30	13.8273
(((((........)))))	chr6:27835150-27835448(-)$1	1	16	34	12.2074
(((((........)))))	chr11:75110463-75110722(+)$1	1	150	168	13.8273
(((((........)))))	chr1:110950151-110950415(-)$1	1	29	47	13.8273
(((((........)))).	chr19:8386439-8386677(+)$1	1	24	42	12.2415
(((((........)))))	chr7:10979563-10979855(-)$1	1	28	46	13.8273
(((((........)))))	chr1:228645377-228645637(-)$1	1	183	201	12.8344
(((.(........).)))	chr1:111991988-111992304(+)$1	1	294	312	12.8698
(((((........).)))	chr5:68462855-68463201(+)$1	1	134	152	11.6403
(((((........)))))	chr6:26158312-26158602(+)$1	1	264	282	13.8273
..(((........))).)	chr6:26285544-26285845(-)$1	1	123	141	13.1602
..(((........)))))	chr8:126010673-126010976(+)$1	1	115	133	13.4089
(((((........)).))	chr7:22862287-22862557(-)$1	1	13	31	11.8541
((((.........)))))	chr15:40331192-40331460(-)$1	1	100	118	8.2251
((((.........)))))	chr6:144416512-144416800(-)$1	1	222	240	8.2251
.((((........)))).	chr1:46769271-46769546(+)$1	1	154	172	13.4148
(((((........)))..	chr19:49999594-49999824(+)$1	1	21	39	12.7043
(..((........)))))	chr11:17099065-17099318(-)$1	1	57	75	11.4378
(.(((........))).)	chr8:74205736-74205964(-)$1	1	28	46	13.1855
..(((........)))..	chr9:113018606-113018926(-)$1	1	221	239	13.0318
)((((........)))).	chr12:6976600-6976847(+)$1	1	221	239	12.6384
...((........))..)	chr1:149858072-149858325(-)$1	1	38	56	11.2842
.((((........)))).	chr10:7830042-7830320(+)$1	1	174	192	11.8242
(..((........)))))	chr17:56429328-56429653(-)$1	1	73	91	12.0974

#PSSM
e : 0.30	f : 0.10	! : 0.10	: : 0.08	g : 0.08	c : 0.08	d : 0.06	" : 0.04	h : 0.04	b : 0.02	[ : 0.02	F : 0.02	G : 0.02	# : 0.02	
e : 0.30	d : 0.28	f : 0.10	! : 0.10	g : 0.06	" : 0.04	[ : 0.04	h : 0.02	c : 0.02	# : 0.02	
e : 0.28	d : 0.26	c : 0.20	f : 0.10	g : 0.06	! : 0.04	h : 0.02	# : 0.02	
e : 0.28	d : 0.24	c : 0.18	f : 0.10	b : 0.08	g : 0.06	[ : 0.02	h : 0.02	
d : 0.24	e : 0.22	c : 0.18	f : 0.10	b : 0.08	r : 0.06	a : 0.06	g : 0.04	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
e : 0.28	d : 0.22	c : 0.16	f : 0.10	b : 0.08	a : 0.06	r : 0.04	g : 0.04	
e : 0.28	d : 0.24	c : 0.18	f : 0.10	b : 0.08	] : 0.06	g : 0.04	
e : 0.28	d : 0.26	c : 0.20	f : 0.10	g : 0.06	h : 0.04	] : 0.02	2 : 0.02	
d : 0.30	e : 0.28	f : 0.10	] : 0.08	c : 0.06	g : 0.06	h : 0.04	2 : 0.04	> : 0.02	
e : 0.30	: : 0.12	f : 0.10	d : 0.10	c : 0.08	g : 0.06	2 : 0.06	] : 0.04	h : 0.04	6 : 0.02	= : 0.02	b : 0.02	> : 0.02	

#score	606.2066665993291
#seq	49
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_UTR_m3_run1.txt

#BEAR
[ggggggguuuuuuuuuuuuggggggg]	chr9:117002396-117002646(+)$1	250	196	224	27.2580
d!!ddddvvvvvvvvvvvvvdddddddd	chr9:117014771-117015008(+)$1	237	25	53	27.8917
===:cccvvvvvvvvvvvvvccccccoo	chr2:232327809-232328119(-)$1	310	91	119	28.4688
gggggggwwwwwwwwwwwwwwggggggg	chr9:116997816-116998031(+)$1	215	3	31	27.7100

#otherMatches

#Seq PSSM
ACAGCUCUGCAGAAACCACAGGGGCUGG	chr9:117002396-117002646(+)$1	250	196	224	27.2580
CCCUCUGCACCUGCCUCCCACAGAGCCA	chr9:117014771-117015008(+)$1	237	25	53	27.8917
GGCAGGUAAAAAUCAAGGUGACCCCAAG	chr2:232327809-232328119(-)$1	310	91	119	28.4688
GGAGGCUUCCAGAACCCACGUGGCCUCC	chr9:116997816-116998031(+)$1	215	3	31	27.7100

#DB
.(((((((............))))))).	chr9:117002396-117002646(+)$1	1	196	224	27.2580
(..((((.............))))))))	chr9:117014771-117015008(+)$1	1	25	53	27.8917
))).(((.............)))(((..	chr2:232327809-232328119(-)$1	1	91	119	28.4688
(((((((..............)))))))	chr9:116997816-116998031(+)$1	1	3	31	27.7100

#PSSM
[ : 0.25	d : 0.25	= : 0.25	g : 0.25	
g : 0.50	! : 0.25	= : 0.25	
g : 0.50	! : 0.25	= : 0.25	
g : 0.50	d : 0.25	: : 0.25	
g : 0.50	d : 0.25	c : 0.25	
g : 0.50	d : 0.25	c : 0.25	
g : 0.50	d : 0.25	c : 0.25	
v : 0.50	g : 0.25	w : 0.25	
v : 0.50	u : 0.25	w : 0.25	
v : 0.50	u : 0.25	w : 0.25	
v : 0.50	u : 0.25	w : 0.25	
v : 0.50	u : 0.25	w : 0.25	
v : 0.50	u : 0.25	w : 0.25	
v : 0.50	u : 0.25	w : 0.25	
v : 0.50	u : 0.25	w : 0.25	
v : 0.50	u : 0.25	w : 0.25	
v : 0.50	u : 0.25	w : 0.25	
v : 0.50	u : 0.25	w : 0.25	
v : 0.50	u : 0.25	w : 0.25	
v : 0.50	u : 0.25	w : 0.25	
g : 0.25	d : 0.25	c : 0.25	w : 0.25	
g : 0.50	d : 0.25	c : 0.25	
g : 0.50	d : 0.25	c : 0.25	
g : 0.50	d : 0.25	c : 0.25	
g : 0.50	d : 0.25	c : 0.25	
g : 0.50	d : 0.25	c : 0.25	
g : 0.50	d : 0.25	o : 0.25	
] : 0.25	d : 0.25	o : 0.25	g : 0.25	

#score	111.32869533914999
#seq	4
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_transcript_m2_run1.txt

#BEAR
gggggg[ffffffooooooffffffgggggg	chr3:42685324-42685592(+)$1	268	20	51	13.9823
=============oooooo============	chr12:80187541-80187809(-)$1	268	28	59	17.3020
ggggggccc[cccooooooccc]ccc]gggg	chr20:56098617-56098832(-)$1	215	94	125	16.1612
eeeeea"""ddddoooooodddd333a]eee	chr7:44524668-44524977(-)$1	309	224	255	14.1763
ccc:cccccc[cccooooooccc]ccc]ccc	chr15:66727350-66727642(+)$1	292	22	53	12.9638
c[ffffff[a[bboooooobb22a]ffffff	chr1:151239633-151239909(+)$1	276	231	262	14.3650
"ccc!!gggggggooooooggggggg]ccc3	chr17:27416878-27417193(-)$1	315	205	236	15.6568
ddd!!dddd!!bboooooobbdddd22dddd	chr2:232326572-232326822(-)$1	250	8	39	13.0465
cc]bba[ccccccooooooccc]cccabbmm	chr16:1741815-1742086(+)$1	271	171	202	13.0071
ffff$$$$$ddddooooooddddffffffee	chrX:118604304-118604571(+)$1	267	10	41	12.2109
==========[bboooooobb]=========	chr5:149825091-149825331(-)$1	240	177	208	17.2713
[dddd[bb[ddddoooooodddd]bb]dddd	chr18:9475464-9475758(+)$1	294	60	91	13.0640
dhhhhhhhh!!bboooooobb333hhhhhhh	chr11:118888610-118888864(-)$1	254	222	253	13.2033
h!!ccc"""ddddoooooodddd333ccc22	chr1:24022267-24022492(+)$1	225	182	213	13.9681
HHHffffff!!bboooooobb22ffffffff	chr7:99056710-99056987(-)$1	277	142	173	12.3161
abbcccgggggggooooooggggggg333cc	chr11:810228-810458(+)$1	230	152	183	14.8971
"dddd!!ccccccooooooccc]ccc]dddd	chr14:75295822-75296136(+)$1	314	251	282	15.1298
####ffffff[bboooooobbffffffccce	chr7:5680816-5681108(-)$1	292	174	205	13.9009
bb[dddd####bboooooobb4444dddd]b	chr2:55791425-55791723(-)$1	298	197	228	13.6299
:ggggggg[ddddooooooddddgggggggc	chr19:11118476-11118715(+)$1	239	69	100	13.9351
cc[a[ffffff[aooooooaffffff]a]cc	chr14:94517466-94517781(-)$1	315	112	143	13.9471
f!!==========oooooo==========22	chr12:465497-465783(-)$1	286	134	165	16.5441
B:ffffff[ddddoooooodddd22ffffff	chr18:55270029-55270276(-)$1	247	25	56	11.3953
d!!bb[ccc[cccooooooccccccbb]ddd	chr7:128407592-128407810(+)$1	218	157	188	14.6145
d[ccc[gggggggooooooggggggg333cc	chr22:20106561-20106772(+)$1	211	140	171	15.6039
iiiiiiiii!!bboooooobb]iiiiiiiii	chr22:36690107-36690438(-)$1	331	74	105	16.6214
eeeee[ccc[cccoooooocccccc]eeeee	chr2:73477339-73477591(+)$1	252	165	196	15.0716
##ddddccc!!bboooooobb22ccc]dddd	chr5:140038640-140038850(+)$1	210	160	191	14.7618
eeeee!!bb[cccooooooccc]bb22eeee	chr7:99697240-99697469(-)$1	229	107	138	14.0512
=:iiiiiiiii[bbnnnnnbb333iiiiiii	chr7:66240137-66240474(+)$1	337	265	296	10.9244
=========[cccooooooccc=========	chr9:35731970-35732190(-)$1	220	161	192	17.4009
=============oooooo============	chr8:124381235-124381467(-)$1	232	6	37	17.3020
fffff[ccc!!bboooooobb22ccc]ffff	chr2:219134588-219134881(-)$1	293	213	244	14.9957
ff"""bb!!ddddoooooodddd22bbffff	chr8:101724887-101725117(-)$1	230	128	159	12.6081
e[dddd[ccc[a[aooooooa]a]cccdddd	chr17:39681017-39681293(-)$1	276	170	201	13.3660
eeeee[gggggggoooooogggggggeeeee	chr1:32497052-32497309(+)$1	257	148	179	14.6713
=====!!a[a[annnnna]a]a22=======	chr21:34143638-34143950(-)$1	312	76	107	11.2866
gggg!!gggggggooooooggggggg77777	chr2:174777697-174778095(-)$1	398	31	62	12.4298
cc[eeeeeacccooooooccc]a333eeeee	chr11:130005357-130005696(+)$1	339	223	254	13.3528
[ccc!!bb!!cccooooooccc22bb333cc	chr22:23522694-23522942(+)$1	248	46	77	15.7482
:ggggggg[acccnnnnnccc]a]ggggggg	chr12:6690355-6690600(-)$1	245	29	60	10.6525
:::==========oooooo==========::	chr16:50354473-50354686(-)$1	213	72	103	12.2101
[eeeee[ffffffooooooffffff]eeeee	chr16:24124196-24124458(+)$1	262	89	120	13.0028
cc####ccc[cccooooooccc22ccc333c	chr11:64537770-64537981(-)$1	211	57	88	16.1205
dddd!!dddd[aooooooadddd]ddddccc	chrX:64959522-64959798(+)$1	276	16	47	12.2974
eeeeeeeee[cccooooooccceeeee]eee	chr3:49066090-49066339(-)$1	249	40	71	13.6996
ccc"""dddd[bboooooobb333dddd]cc	chr1:93621755-93622019(-)$1	264	4	35	14.8453
bb!!ccc"""cccooooooccc22ccc22bb	chr19:49657502-49657771(-)$1	269	81	112	14.6953
$$===========oooooo===========5	chr1:21073985-21074242(-)$1	257	82	113	15.9964
:============oooooo============	chr22:36688063-36688332(-)$1	269	3	34	16.4358

#otherMatches

#Seq PSSM
UGAGUAUCUGAGUGGGAAAAUUUAGUGUUUG	chr3:42685324-42685592(+)$1	268	20	51	13.9823
aauaauuuuaaaaaauaaAUUUUGAAAUUAU	chr12:80187541-80187809(-)$1	268	28	59	17.3020
AAACUACUGGACUGAUCAAGGUACAGCUGGU	chr20:56098617-56098832(-)$1	215	94	125	16.1612
CAGUCCCAGUUCCAGUCCAGGAAAUAGAGAU	chr7:44524668-44524977(-)$1	309	224	255	14.1763
UGGAGGCCUUGCAGAAGAAGCUGGAGGAGCU	chr15:66727350-66727642(+)$1	292	22	53	12.9638
GAAGCACGGAAUAUAGGGUUAGAUGUGUGUU	chr1:151239633-151239909(+)$1	276	231	262	14.3650
ACGGCUGGAGGUGGGUUCACACUUCUCCCGG	chr17:27416878-27417193(-)$1	315	205	236	15.6568
CCAGAGUCUAACAUCUCAUUGGGACCAUGGU	chr2:232326572-232326822(-)$1	250	8	39	13.0465
GUAUGGACUGCAUUCAGACGUGACAGCGCAG	chr16:1741815-1742086(+)$1	271	171	202	13.0071
GCAUCUCUUUCCUAUUCCCAGGAAUGCUUCC	chrX:118604304-118604571(+)$1	267	10	41	12.2109
GCUAAUGCUUGGGUUUAUUUUGAAGCAUUGG	chr5:149825091-149825331(-)$1	240	177	208	17.2713
UCCCAAUCAUUGUAAACAGGCAGAGGCUGGG	chr18:9475464-9475758(+)$1	294	60	91	13.0640
GACUAGGGGUAACUCUCUCGUAAUCCUCUAG	chr11:118888610-118888864(-)$1	254	222	253	13.2033
GAGUUGGGAUUUGGGGAUGCAAAAUAUAGUA	chr1:24022267-24022492(+)$1	225	182	213	13.9681
GGGAGCAUCUCGGGGAUUACCAUGGUGCUGG	chr7:99056710-99056987(-)$1	277	142	173	12.3161
GCCGCCGUGGGGCCCCAGUGUCCCAUACAGG	chr11:810228-810458(+)$1	230	152	183	14.8971
CAAAUGAAGGGCCCAUUUAGGCAUCUGGUUU	chr14:75295822-75296136(+)$1	314	251	282	15.1298
UGCAACCGCAUGUCUUGCCGCUGUGGUGCCC	chr7:5680816-5681108(-)$1	292	174	205	13.9009
UUGUGGCACCAGUGGAAAAACCUAAGCCAGA	chr2:55791425-55791723(-)$1	298	197	228	13.6299
AACUGAGGUGACAUGGGCUUGUCUCUUGGUA	chr19:11118476-11118715(+)$1	239	69	100	13.9351
GCCCCUGCUUGUGUCUGCCCCAAGUAAGAGC	chr14:94517466-94517781(-)$1	315	112	143	13.9471
GGGGCUGGGCCCAAGGUUGUGGGCUUGGCAA	chr12:465497-465783(-)$1	286	134	165	16.5441
GUACAGGGUGAAGGAGCUGCUUCUGUCUUGU	chr18:55270029-55270276(-)$1	247	25	56	11.3953
GUAUGCUUCUAGGGGAUCACCUGAACAGUUU	chr7:128407592-128407810(+)$1	218	157	188	14.6145
CUCUUUAAGGUUGAGGUUACAACUUUUAUGG	chr22:20106561-20106772(+)$1	211	140	171	15.6039
UUUGCUUUCUUCCCUGCUAGGUGAAAGCAAA	chr22:36690107-36690438(-)$1	331	74	105	16.6214
UUAUGGAGGAGACAGAGCGGUCCCUGCAUGA	chr2:73477339-73477591(+)$1	252	165	196	15.0716
UGUGAGCAAGGUUGGGUAAGGAAUUGUUUCA	chr5:140038640-140038850(+)$1	210	160	191	14.7618
UCGGGAACAGGUGGCUCUGUAUGUGGACCUG	chr7:99697240-99697469(-)$1	229	107	138	14.0512
UUUCUUCUCUGCCUGAGUGAGACACAGAGGA	chr7:66240137-66240474(+)$1	337	265	296	10.9244
cggggccuggccccggggcgggcgggccCUG	chr9:35731970-35732190(-)$1	220	161	192	17.4009
uauauauauauauauacaaauauauauauau	chr8:124381235-124381467(-)$1	232	6	37	17.3020
GGCCAUGGGACAGGAGACGCUCACCCCUGGC	chr2:219134588-219134881(-)$1	293	213	244	14.9957
UCAAUGGAAAACAAAUUUAUGUUGGUCGAGC	chr8:101724887-101725117(-)$1	230	128	159	12.6081
UGGCCUACCUGAAGAAGAACCAUGAGGAGGU	chr17:39681017-39681293(-)$1	276	170	201	13.3660
UCUCUGUAUUGGGAAAGGGCUCAAUGAGAGA	chr1:32497052-32497309(+)$1	257	148	179	14.6713
CCGGGCACGGGCGAAGAGGCGGGCCCCGGUG	chr21:34143638-34143950(-)$1	312	76	107	11.2866
AUGAUGUAAAUGGUAAUGUCCAUUUGAAUAU	chr2:174777697-174778095(-)$1	398	31	62	12.4298
ACCCCUUCCCAGCCCUACCUGAGAACGAAGG	chr11:130005357-130005696(+)$1	339	223	254	13.3528
AGCUUAGCGUCCGAGGAggcggcggcggcgg	chr22:23522694-23522942(+)$1	248	46	77	15.7482
CUUUUAUUGUUCUGCAGAAGAUGGGAUAAAA	chr12:6690355-6690600(-)$1	245	29	60	10.6525
AACAAAUUUUGGCGUUCCAGUUGAAGUUUUU	chr16:50354473-50354686(-)$1	213	72	103	12.2101
CCCUUCAGGUUUAAGUUACUGAGCCAGGAGG	chr16:24124196-24124458(+)$1	262	89	120	13.0028
GAGAAGUCGGUGCAGAAUAGUAAACGGGAGU	chr11:64537770-64537981(-)$1	211	57	88	16.1205
AGGUAAAAUGAGAGAAAGCCAUUGACCUCUG	chrX:64959522-64959798(+)$1	276	16	47	12.2974
GGAGUCUCAUGCUGCCCUAAGCUGAGAGCUU	chr3:49066090-49066339(-)$1	249	40	71	13.6996
AUGUUCUGCUUUGACAAUACAUUCAGCACCA	chr1:93621755-93622019(-)$1	264	4	35	14.8453
CAGGCUCACAGGCACCAAGGCCACGGGAUUG	chr19:49657502-49657771(-)$1	269	81	112	14.6953
UUUUUUUUUCAGUGCAUUUGCUGAAAAAAAC	chr1:21073985-21074242(-)$1	257	82	113	15.9964
CUGAGCAGGUGCCAUCUCGGGCAUCUGCUUA	chr22:36688063-36688332(-)$1	269	3	34	16.4358

#DB
((((((.((((((......))))))))))))	chr3:42685324-42685592(+)$1	1	20	51	13.9823
(((((((((((((......))))))))))))	chr12:80187541-80187809(-)$1	1	28	59	17.3020
(((((((((.(((......))).))).))))	chr20:56098617-56098832(-)$1	1	94	125	16.1612
((((((...((((......))))...).)))	chr7:44524668-44524977(-)$1	1	224	255	14.1763
))).((((((.(((......))).))).)))	chr15:66727350-66727642(+)$1	1	22	53	12.9638
(.((((((.(.((......))..).))))))	chr1:151239633-151239909(+)$1	1	231	262	14.3650
.(((..(((((((......))))))).))).	chr17:27416878-27417193(-)$1	1	205	236	15.6568
(((..((((..((......))))))..))))	chr2:232326572-232326822(-)$1	1	8	39	13.0465
)).))(.((((((......))).))))((..	chr16:1741815-1742086(+)$1	1	171	202	13.0071
((((.....((((......))))))))))))	chrX:118604304-118604571(+)$1	1	10	41	12.2109
((((((((((.((......)).)))))))))	chr5:149825091-149825331(-)$1	1	177	208	17.2713
.((((.((.((((......)))).)).))))	chr18:9475464-9475758(+)$1	1	60	91	13.0640
)((((((((..((......))...)))))))	chr11:118888610-118888864(-)$1	1	222	253	13.2033
(..(((...((((......))))...)))..	chr1:24022267-24022492(+)$1	1	182	213	13.9681
(((((((((..((......))..))))))((	chr7:99056710-99056987(-)$1	1	142	173	12.3161
)))((((((((((......)))))))...))	chr11:810228-810458(+)$1	1	152	183	14.8971
.((((..((((((......))).))).))))	chr14:75295822-75296136(+)$1	1	251	282	15.1298
....((((((.((......))))))))))))	chr7:5680816-5681108(-)$1	1	174	205	13.9009
((.((((....((......))....)))).)	chr2:55791425-55791723(-)$1	1	197	228	13.6299
.(((((((.((((......)))))))))))(	chr19:11118476-11118715(+)$1	1	69	100	13.9351
((.(.((((((.(......))))))).).))	chr14:94517466-94517781(-)$1	1	112	143	13.9471
(..((((((((((......))))))))))..	chr12:465497-465783(-)$1	1	134	165	16.5441
(.((((((.((((......))))..))))))	chr18:55270029-55270276(-)$1	1	25	56	11.3953
(..((.(((.(((......)))))))).)))	chr7:128407592-128407810(+)$1	1	157	188	14.6145
(.(((.(((((((......)))))))...))	chr22:20106561-20106772(+)$1	1	140	171	15.6039
(((((((((..((......)).)))))))))	chr22:36690107-36690438(-)$1	1	74	105	16.6214
(((((.(((.(((......)))))).)))))	chr2:73477339-73477591(+)$1	1	165	196	15.0716
..(((((((..((......))..))).))))	chr5:140038640-140038850(+)$1	1	160	191	14.7618
(((((..((.(((......))).))..))))	chr7:99697240-99697469(-)$1	1	107	138	14.0512
).(((((((((.((.....))...)))))))	chr7:66240137-66240474(+)$1	1	265	296	10.9244
(((((((((.(((......))))))))))))	chr9:35731970-35732190(-)$1	1	161	192	17.4009
(((((((((((((......))))))))))))	chr8:124381235-124381467(-)$1	1	6	37	17.3020
(((((.(((..((......))..))).))))	chr2:219134588-219134881(-)$1	1	213	244	14.9957
((...((..((((......))))..))))))	chr8:101724887-101725117(-)$1	1	128	159	12.6081
(.((((.(((.(.(......).).)))))))	chr17:39681017-39681293(-)$1	1	170	201	13.3660
(((((.(((((((......))))))))))))	chr1:32497052-32497309(+)$1	1	148	179	14.6713
(((((..(.(.(.....).).)..)))))))	chr21:34143638-34143950(-)$1	1	76	107	11.2866
((((..(((((((......))))))).....	chr2:174777697-174778095(-)$1	1	31	62	12.4298
((.(((((((((......))).)...)))))	chr11:130005357-130005696(+)$1	1	223	254	13.3528
.(((..((..(((......)))..))...))	chr22:23522694-23522942(+)$1	1	46	77	15.7482
.(((((((.((((.....))).).)))))))	chr12:6690355-6690600(-)$1	1	29	60	10.6525
...((((((((((......))))))))))..	chr16:50354473-50354686(-)$1	1	72	103	12.2101
.(((((.((((((......)))))).)))))	chr16:24124196-24124458(+)$1	1	89	120	13.0028
((....(((.(((......)))..)))...)	chr11:64537770-64537981(-)$1	1	57	88	16.1205
((((..((((.(......))))).)))))))	chrX:64959522-64959798(+)$1	1	16	47	12.2974
(((((((((.(((......)))))))).)))	chr3:49066090-49066339(-)$1	1	40	71	13.6996
(((...((((.((......))...)))).))	chr1:93621755-93622019(-)$1	1	4	35	14.8453
((..(((...(((......)))..)))..))	chr19:49657502-49657771(-)$1	1	81	112	14.6953
..(((((((((((......))))))))))).	chr1:21073985-21074242(-)$1	1	82	113	15.9964
.((((((((((((......))))))))))))	chr22:36688063-36688332(-)$1	1	3	34	16.4358

#PSSM
c : 0.14	= : 0.12	e : 0.12	d : 0.10	f : 0.08	: : 0.08	g : 0.06	[ : 0.06	" : 0.04	# : 0.04	b : 0.04	h : 0.02	H : 0.02	a : 0.02	B : 0.02	i : 0.02	$ : 0.02	
c : 0.16	= : 0.12	e : 0.12	g : 0.10	d : 0.08	[ : 0.06	f : 0.06	! : 0.06	b : 0.06	: : 0.06	# : 0.04	h : 0.02	H : 0.02	i : 0.02	$ : 0.02	
= : 0.14	e : 0.12	d : 0.12	g : 0.10	c : 0.10	f : 0.08	! : 0.08	[ : 0.06	# : 0.04	i : 0.04	] : 0.02	h : 0.02	H : 0.02	b : 0.02	" : 0.02	: : 0.02	
= : 0.18	e : 0.14	d : 0.12	g : 0.10	f : 0.10	c : 0.10	! : 0.04	b : 0.04	# : 0.04	i : 0.04	" : 0.04	: : 0.02	h : 0.02	a : 0.02	
= : 0.18	e : 0.14	c : 0.10	f : 0.10	! : 0.10	d : 0.10	g : 0.08	b : 0.04	i : 0.04	" : 0.04	$ : 0.02	h : 0.02	[ : 0.02	# : 0.02	
= : 0.16	! : 0.14	[ : 0.12	f : 0.10	g : 0.08	c : 0.08	d : 0.08	e : 0.06	a : 0.04	i : 0.04	$ : 0.02	h : 0.02	b : 0.02	# : 0.02	" : 0.02	
= : 0.16	c : 0.16	g : 0.14	f : 0.10	[ : 0.08	d : 0.08	b : 0.06	! : 0.06	" : 0.04	i : 0.04	e : 0.04	$ : 0.02	h : 0.02	
c : 0.19	= : 0.16	f : 0.14	g : 0.14	" : 0.06	d : 0.06	b : 0.06	i : 0.04	e : 0.04	$ : 0.02	h : 0.02	# : 0.02	! : 0.02	a : 0.02	
c : 0.19	= : 0.16	[ : 0.12	f : 0.10	g : 0.10	" : 0.06	d : 0.06	i : 0.04	! : 0.04	$ : 0.02	h : 0.02	# : 0.02	b : 0.02	a : 0.02	e : 0.02	
d : 0.18	= : 0.14	[ : 0.14	! : 0.14	c : 0.10	g : 0.10	f : 0.08	a : 0.06	# : 0.02	i : 0.02	" : 0.02	
c : 0.25	[ : 0.16	d : 0.14	= : 0.12	! : 0.12	g : 0.10	f : 0.06	# : 0.02	i : 0.02	
c : 0.27	b : 0.21	d : 0.14	= : 0.12	g : 0.10	a : 0.06	f : 0.04	[ : 0.04	
c : 0.25	b : 0.23	d : 0.14	= : 0.12	g : 0.10	f : 0.04	o : 0.04	a : 0.02	[ : 0.02	n : 0.02	
o : 0.90	n : 0.04	c : 0.02	b : 0.02	a : 0.02	
o : 0.94	n : 0.06	
o : 0.94	n : 0.06	
o : 0.94	n : 0.06	
o : 0.94	n : 0.04	a : 0.02	
o : 0.90	c : 0.04	n : 0.02	] : 0.02	a : 0.02	
c : 0.25	b : 0.23	d : 0.16	= : 0.12	g : 0.10	f : 0.04	o : 0.04	a : 0.04	
c : 0.27	b : 0.23	d : 0.16	= : 0.12	g : 0.10	f : 0.06	a : 0.02	] : 0.02	
c : 0.23	d : 0.18	= : 0.12	g : 0.10	] : 0.10	f : 0.08	2 : 0.08	3 : 0.06	4 : 0.02	a : 0.02	
d : 0.18	= : 0.16	2 : 0.16	g : 0.10	f : 0.08	] : 0.08	c : 0.06	3 : 0.06	a : 0.06	4 : 0.02	i : 0.02	e : 0.02	
= : 0.16	c : 0.14	f : 0.12	3 : 0.12	g : 0.12	2 : 0.12	] : 0.10	a : 0.02	d : 0.02	4 : 0.02	i : 0.02	b : 0.02	e : 0.02	
c : 0.21	= : 0.18	g : 0.14	f : 0.12	3 : 0.06	d : 0.06	b : 0.06	2 : 0.04	i : 0.04	] : 0.02	h : 0.02	4 : 0.02	e : 0.02	
= : 0.18	c : 0.18	g : 0.16	f : 0.12	b : 0.08	3 : 0.06	d : 0.06	2 : 0.04	i : 0.04	] : 0.04	h : 0.02	e : 0.02	
= : 0.18	] : 0.14	c : 0.10	f : 0.10	e : 0.10	g : 0.06	3 : 0.06	d : 0.06	a : 0.04	2 : 0.04	b : 0.04	i : 0.04	h : 0.02	7 : 0.02	
= : 0.18	d : 0.16	f : 0.12	e : 0.10	g : 0.08	] : 0.08	3 : 0.08	c : 0.06	i : 0.04	b : 0.02	h : 0.02	a : 0.02	7 : 0.02	2 : 0.02	
= : 0.18	e : 0.14	d : 0.14	f : 0.12	c : 0.10	g : 0.08	3 : 0.08	] : 0.04	i : 0.04	b : 0.02	h : 0.02	7 : 0.02	2 : 0.02	
c : 0.18	e : 0.16	= : 0.14	d : 0.12	f : 0.10	g : 0.08	2 : 0.04	i : 0.04	m : 0.02	h : 0.02	] : 0.02	7 : 0.02	: : 0.02	3 : 0.02	b : 0.02	
e : 0.18	c : 0.18	= : 0.12	d : 0.12	f : 0.10	g : 0.06	2 : 0.04	b : 0.04	i : 0.04	3 : 0.02	m : 0.02	h : 0.02	7 : 0.02	: : 0.02	5 : 0.02	

#score	710.8423985921785
#seq	50
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF233ZXV_DHX30_CDS_m3_run1.txt

#BEAR
ffffffwwwwwwwwwwwwwwffff	chr11:618790-619005(-)$1	215	32	56	27.0817
ggggggvvvvvvvvvvvvvggggg	chrM:5917-6152(+)$1	235	132	156	27.2047
:ffffffuuuuuuuuuuuufffff	chrM:8070-8275(+)$1	205	1	25	27.1293
ggggggvvvvvvvvvvvvvggggg	chr11:62285830-62286077(-)$1	247	137	161	27.2047
!ffffffuuuuuuuuuuuufffff	chrM:7958-8185(+)$1	227	113	137	28.3006
ggggggvvvvvvvvvvvvvggggg	chrM:5912-6117(+)$1	205	137	161	27.2047
!ffffffuuuuuuuuuuuufffff	chrM:8024-8253(+)$1	229	47	71	28.3006
!ffffffuuuuuuuuuuuufffff	chrM:8053-8270(+)$1	217	18	42	28.3006

#otherMatches

#Seq PSSM
CCCACCAACCAGCCACUCCCGGUG	chr11:618790-619005(-)$1	215	32	56	27.0817
GUAACGACCACAUCUACAACGUUA	chrM:5917-6152(+)$1	235	132	156	27.2047
AUGAGCUGUCCCCACAUUAGGCUU	chrM:8070-8275(+)$1	205	1	25	27.1293
GCAUCUGUUCCCAGCAUGAAGGUG	chr11:62285830-62286077(-)$1	247	137	161	27.2047
AUGAGCUGUCCCCACAUUAGGCUU	chrM:7958-8185(+)$1	227	113	137	28.3006
GUAACGACCACAUCUACAACGUUA	chrM:5912-6117(+)$1	205	137	161	27.2047
AUGAGCUGUCCCCACAUUAGGCUU	chrM:8024-8253(+)$1	229	47	71	28.3006
AUGAGCUGUCCCCACAUUAGGCUU	chrM:8053-8270(+)$1	217	18	42	28.3006

#DB
((((((..............))))	chr11:618790-619005(-)$1	1	32	56	27.0817
((((((.............)))))	chrM:5917-6152(+)$1	1	132	156	27.2047
.((((((............)))))	chrM:8070-8275(+)$1	1	1	25	27.1293
((((((.............)))))	chr11:62285830-62286077(-)$1	1	137	161	27.2047
.((((((............)))))	chrM:7958-8185(+)$1	1	113	137	28.3006
((((((.............)))))	chrM:5912-6117(+)$1	1	137	161	27.2047
.((((((............)))))	chrM:8024-8253(+)$1	1	47	71	28.3006
.((((((............)))))	chrM:8053-8270(+)$1	1	18	42	28.3006

#PSSM
g : 0.37	! : 0.37	f : 0.12	: : 0.12	
f : 0.62	g : 0.37	
f : 0.62	g : 0.37	
f : 0.62	g : 0.37	
f : 0.62	g : 0.37	
f : 0.62	g : 0.37	
f : 0.50	v : 0.37	w : 0.12	
u : 0.50	v : 0.37	w : 0.12	
u : 0.50	v : 0.37	w : 0.12	
u : 0.50	v : 0.37	w : 0.12	
u : 0.50	v : 0.37	w : 0.12	
u : 0.50	v : 0.37	w : 0.12	
u : 0.50	v : 0.37	w : 0.12	
u : 0.50	v : 0.37	w : 0.12	
u : 0.50	v : 0.37	w : 0.12	
u : 0.50	v : 0.37	w : 0.12	
u : 0.50	v : 0.37	w : 0.12	
u : 0.50	v : 0.37	w : 0.12	
u : 0.50	v : 0.37	w : 0.12	
f : 0.50	g : 0.37	w : 0.12	
f : 0.62	g : 0.37	
f : 0.62	g : 0.37	
f : 0.62	g : 0.37	
f : 0.62	g : 0.37	

#score	220.72733663901252
#seq	8
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_UTR_m3_run1.txt

#BEAR
$$$ffffffqqqqqqqqffffffccc	chr5:137274388-137274654(-)$1	266	89	115	14.5145
bb[ffffffqqqqqqqqffffff]bb	chr10:75578355-75578627(-)$1	272	120	146	14.5906
dddd[ddddqqqqqqqqdddd4444d	chr19:54970382-54970614(+)$1	232	156	182	15.8841
gggg"""bbqqqqqqqqbb333gggg	chr7:72419952-72420199(-)$1	247	48	74	15.8025
Gccceeeeeqqqqqqqqeeeee22cc	chr9:95476213-95476489(-)$1	276	243	269	15.2604
c!!ffffffqqqqqqqqffffff]cc	chr20:49201075-49201355(+)$1	280	59	85	15.5759
eee!!ddddqqqqqqqqdddd]eeee	chr2:131975700-131975996(+)$1	296	152	178	15.7965
e[dddd[bbqqqqqqqqbb]dddd44	chr18:8609577-8609960(+)$1	383	229	255	15.3105
[a!!eeeeeqqqqqqqqeeeee22a]	chr12:53869269-53869504(+)$1	235	63	89	16.1751
iiiiiiiiiqqqqqqqqiiiiiiiii	chr19:40738445-40738674(-)$1	229	88	114	16.1553
ddd[eeeeeqqqqqqqqeeeee]ddd	chr10:102265526-102265809(-)$1	283	229	255	15.4853
g!!ffffffqqqqqqqqffffff]gg	chr1:24791600-24791898(+)$1	298	83	109	15.5862
dddd[ddddqqqqqqqqdddd4444d	chr19:54970414-54970640(+)$1	226	124	150	15.8841
Feeeee[bbqqqqqqqqbbeeeee::	chr11:61643981-61644283(-)$1	302	39	65	13.4440
bb!!ccc[aqqqqqqqqa]ccc333b	chr19:54659079-54659370(+)$1	291	96	122	15.7857
ggg####bbqqqqqqqqbb]gggggg	chr16:89762409-89762674(+)$1	265	192	218	15.7562
gggggddddqqqqqqqqdddd:::a!	chr11:18034093-18034427(-)$1	334	117	143	13.0484
"ccc!!cccqqqqqqqqcccccc333	chr22:50020587-50020829(-)$1	242	172	198	16.1851
=========qqqqqqqq=========	chr8:66630269-66630540(-)$1	271	4	30	16.8277
ff[ffffffqqqqqqqqffffff]ff	chr3:128205802-128206058(-)$1	256	17	43	15.0699
###ffffffqqqqqqqqffffff444	chr17:30535256-30535553(+)$1	297	181	207	15.4220
dddd[ddddqqqqqqqqdddd]dddd	chr1:229476028-229476309(-)$1	281	119	145	15.3803
gggggggbbqqqqqqqqbb4444ggg	chr9:139730723-139730966(+)$1	243	209	235	15.8213
dddd[ddddqqqqqqqqdddd]dddd	chr4:2935863-2936146(-)$1	283	162	188	15.3803
d[gggggggqqqqqqqqggggggg]d	chr19:972870-973132(+)$1	262	18	44	15.9461
eeeee!!bbqqqqqqqqbbeeeee]d	chrX:153609619-153609859(+)$1	240	111	137	15.3624
ddd!!ddddqqqqqqqqdddd]dddd	chr1:12072162-12072449(+)$1	287	251	277	15.6108
=========qqqqqqqq=========	chr8:66630493-66630754(-)$1	261	15	41	16.8277
iigggggggqqqqqqqqggggggg::	chr19:10464393-10464674(-)$1	281	112	138	14.4518
eee[eeeeeqqqqqqqqeeeee]eee	chr8:71314118-71314442(-)$1	324	276	302	15.6121
hhhheeeeeqqqqqqqqeeeee7777	chr1:36787652-36787922(+)$1	270	111	137	13.5975
[bb[ccc[aaqqqqqqqqa]a]ccc2	chr19:2096734-2097022(+)$1	288	93	119	13.2209
bb!!eeeeeqqqqqqqqeeeee22bb	chrX:48436905-48437208(+)$1	303	277	303	15.2378
cceeeee[aqqqqqqqqaeeeee444	chr1:11721384-11721640(+)$1	256	182	208	16.2420
cceeeee[aqqqqqqqqaeeeee444	chr1:11721497-11721776(+)$1	279	69	95	16.2420
i[bb[bb[aqqqqqqqqa]bb]bb]i	chr22:19957770-19958058(-)$1	288	253	279	13.8922
ffffff[bbqqqqqqqqbb22fffff	chr16:28847498-28847748(+)$1	250	129	155	14.3460
iiiiiiiiiqqqqqqqqiiiiiiiii	chr12:391410-391737(-)$1	327	27	53	16.1553
ggg!!ddddqqqqqqqqdddd]gggg	chr1:113247363-113247656(-)$1	293	62	88	16.5658
f"""eeeeeqqqqqqqqeeeee333f	chr9:139904835-139905113(-)$1	278	133	159	16.3975
eecccddddqqqqqqqqdddd]ccc:	chr2:192551331-192551618(+)$1	287	244	270	14.9953
ffffff[bbqqqqqqqqbb]ffffff	chr17:76122887-76123205(-)$1	318	171	197	14.8790
:ccc[ddddqqqqqqqqdddd]ccc:	chr9:35690594-35690856(-)$1	262	97	123	14.4227
eegggggggqqqqqqqqggggggg::	chr12:16500572-16500872(+)$1	300	269	295	14.2368
ee[ffffffqqqqqqqqffffffeee	chrX:135594252-135594580(+)$1	328	211	237	14.8883
ggg####bbqqqqqqqqbb]gggggg	chr16:89762511-89762772(+)$1	261	90	116	15.7562
fffbb[cccqqqqqqqqcccbb]fff	chr3:49049846-49050119(+)$1	273	163	189	13.8288
=========qqqqqqqq=========	chr1:158580623-158580847(-)$1	224	103	129	16.8277
cc[ddddbbqqqqqqqqbb]ddddcc	chr4:718790-719023(+)$1	233	177	203	15.3402
ggggggg[aqqqqqqqqa22gggggg	chr19:1878701-1878984(-)$1	283	106	132	15.7177
gggg[ddddqqqqqqqqdddd]gggg	chr22:40804936-40805223(+)$1	287	224	250	16.5083
[a!!eeeeerrrrrrrrreeeee333	chr8:145650479-145650758(-)$1	279	25	51	10.2584
ccc!!ddddqqqqqqqqdddd22ccc	chr6:32135674-32135933(+)$1	259	131	157	15.9539
dddd[ddddqqqqqqqqdddddddd4	chr5:137274596-137274855(-)$1	259	58	84	15.2015
cc[ddddbbqqqqqqqqbb]dddd33	chr12:132402684-132403012(+)$1	328	221	247	15.6412

#otherMatches

#Seq PSSM
UUUUGCAUGCAAUGACUCAUGCAUGG	chr5:137274388-137274654(-)$1	266	89	115	14.5145
GUUGUGGGUGCACACCUGCCUGCUGC	chr10:75578355-75578627(-)$1	272	120	146	14.5906
UCCACGUGAGGUCAUAGUCACAGCAU	chr19:54970382-54970614(+)$1	232	156	182	15.8841
GCUGUUUCAAUAUUGUGUGUCCUGGC	chr7:72419952-72420199(-)$1	247	48	74	15.8025
GGACCAGCUGGACCUGAGGCUGCAGU	chr9:95476213-95476489(-)$1	276	243	269	15.2604
UGUGUGUGGAUACGUGGCUGCAUGAC	chr20:49201075-49201355(+)$1	280	59	85	15.5759
UGGCUGGGAUUGACAUUUCUCUUCAA	chr2:131975700-131975996(+)$1	296	152	178	15.7965
CAGGGCCGCCGGAGGAAGCAGCCCCC	chr18:8609577-8609960(+)$1	383	229	255	15.3105
Cuuuuuuuuuuuuuuuuaagaauuau	chr12:53869269-53869504(+)$1	235	63	89	16.1751
GCUUGGGCCCCAUCCCUGGCCCGAGC	chr19:40738445-40738674(-)$1	229	88	114	16.1553
UGGGCCCUGUAGUAUUUCAGGGACCG	chr10:102265526-102265809(-)$1	283	229	255	15.4853
uaagugcaugagcuuuggugcaugaa	chr1:24791600-24791898(+)$1	298	83	109	15.5862
UCCACGUGAGGUCAUAGUCACAGCAU	chr19:54970414-54970640(+)$1	226	124	150	15.8841
ggccagugguacugccucccuggcuu	chr11:61643981-61644283(-)$1	302	39	65	13.4440
CCCCGCAUGCUGAUCCCCCUGCCCAG	chr19:54659079-54659370(+)$1	291	96	122	15.7857
GUGGGAGCCACAAUUGAGGAUACCCC	chr16:89762409-89762674(+)$1	265	192	218	15.7562
UUCGCGGUCGACUUAGGGGCCUGCCG	chr11:18034093-18034427(-)$1	334	117	143	13.0484
UCAGAUGAAAAUUUACCUUCUUGUUA	chr22:50020587-50020829(-)$1	242	172	198	16.1851
cggauguguguuugcgugcauguuug	chr8:66630269-66630540(-)$1	271	4	30	16.8277
GGACUGGUGCUCUUUCUCGCCGGAUC	chr3:128205802-128206058(-)$1	256	17	43	15.0699
AGAUACUUUGUAAUGAGAAGGUACAA	chr17:30535256-30535553(+)$1	297	181	207	15.4220
GGCAGCGUUGUGAUAUGGAUGGUGCC	chr1:229476028-229476309(-)$1	281	119	145	15.3803
UGGGUCACCUUGGAUCUGGCUGUUGG	chr9:139730723-139730966(+)$1	243	209	235	15.8213
UCUCUCGCUGUUACGAGGGCGUGGGA	chr4:2935863-2936146(-)$1	283	162	188	15.3803
GCGUUGGGCAGCUGUGAGCCCAGCAC	chr19:972870-973132(+)$1	262	18	44	15.9461
GGAGGCAGCAGACUCAGGCCCUCCAU	chrX:153609619-153609859(+)$1	240	111	137	15.3624
UGUAGAUCUGUUUUGGAAGAUGGCAU	chr1:12072162-12072449(+)$1	287	251	277	15.6108
GUGAAGACAUUGCAUGUUGUUUUCAC	chr8:66630493-66630754(-)$1	261	15	41	16.8277
CUGCCUCCUUCCCAUCUGGGGGGUGC	chr19:10464393-10464674(-)$1	281	112	138	14.4518
GACGUUGUCUUAGACACGACGAAGUC	chr8:71314118-71314442(-)$1	324	276	302	15.6121
CAGGGGGUGGCGGUCCACGCCCAGUA	chr1:36787652-36787922(+)$1	270	111	137	13.5975
ggcgggcgggggaggagacacggcca	chr19:2096734-2097022(+)$1	288	93	119	13.2209
CCUUCCCCUGAAAUGAUGGGGGUUGG	chrX:48436905-48437208(+)$1	303	277	303	15.2378
CUUUCAGAGACGGAGCACCUGAGAUG	chr1:11721384-11721640(+)$1	256	182	208	16.2420
CUUUCAGAGACGGAGCACCUGAGAUG	chr1:11721497-11721776(+)$1	279	69	95	16.2420
UGCAGGCAGGCAGACCACGGUGUGGG	chr22:19957770-19958058(-)$1	288	253	279	13.8922
CCUGCACCUGUCUGUGAAGUAUGUAG	chr16:28847498-28847748(+)$1	250	129	155	14.3460
GGGAGAAGACAGGAGAUUUUUCUUCC	chr12:391410-391737(-)$1	327	27	53	16.1553
CUGAGUCACAGGGAGGGGUGGGCAGG	chr1:113247363-113247656(-)$1	293	62	88	16.5658
CAGGGCCCUGAGCUCUGGGGGUGGGG	chr9:139904835-139905113(-)$1	278	133	159	16.3975
CUUCCCCUUUUUACUGUAGGGUGGAU	chr2:192551331-192551618(+)$1	287	244	270	14.9953
GCCAGGCGUUGAAGACCACCCCUGGC	chr17:76122887-76123205(-)$1	318	171	197	14.8790
acgcguccgggugggagcgggggcgg	chr9:35690594-35690856(-)$1	262	97	123	14.4227
CCCAUUUCUCAAACUCCAGGAAUGAA	chr12:16500572-16500872(+)$1	300	269	295	14.2368
UUCAUCAAUAAAAAUGAGUUGAUAAU	chrX:135594252-135594580(+)$1	328	211	237	14.8883
GUGGGAGCCACAAUUGAGGAUACCCC	chr16:89762511-89762772(+)$1	261	90	116	15.7562
CAGGUACACUCAAGGCUGUGACUCUG	chr3:49049846-49050119(+)$1	273	163	189	13.8288
GCUUUAUUCCGAUUAUAGAAUAAAGU	chr1:158580623-158580847(-)$1	224	103	129	16.8277
AUGAGGACUCGUAUUUCAGCUCCUGU	chr4:718790-719023(+)$1	233	177	203	15.3402
GGAGGCCAGAGCGUGCCCAGGGCCUC	chr19:1878701-1878984(-)$1	283	106	132	15.7177
AGCUGCUGAGAGACAGGUCAGAGGCU	chr22:40804936-40805223(+)$1	287	224	250	16.5083
ACCGCACAGGACCAUGAGCUGUGGAU	chr8:145650479-145650758(-)$1	279	25	51	10.2584
CUGUGAGCUGCAGAUAAGGCUAUCAG	chr6:32135674-32135933(+)$1	259	131	157	15.9539
AGUGGUAUGCCCCUUGUCAUAUACUC	chr5:137274596-137274855(-)$1	259	58	84	15.2015
GGAGCAUUGGGAUAUAACAGGUGUAA	chr12:132402684-132403012(+)$1	328	221	247	15.6412

#DB
...((((((........)))))))))	chr5:137274388-137274654(-)$1	1	89	115	14.5145
((.((((((........)))))).))	chr10:75578355-75578627(-)$1	1	120	146	14.5906
((((.((((........))))....)	chr19:54970382-54970614(+)$1	1	156	182	15.8841
((((...((........))...))))	chr7:72419952-72420199(-)$1	1	48	74	15.8025
)((((((((........)))))..))	chr9:95476213-95476489(-)$1	1	243	269	15.2604
(..((((((........)))))).))	chr20:49201075-49201355(+)$1	1	59	85	15.5759
(((..((((........)))).))))	chr2:131975700-131975996(+)$1	1	152	178	15.7965
(.((((.((........)).))))..	chr18:8609577-8609960(+)$1	1	229	255	15.3105
.(..(((((........)))))..).	chr12:53869269-53869504(+)$1	1	63	89	16.1751
(((((((((........)))))))))	chr19:40738445-40738674(-)$1	1	88	114	16.1553
(((.(((((........))))).)))	chr10:102265526-102265809(-)$1	1	229	255	15.4853
(..((((((........)))))).))	chr1:24791600-24791898(+)$1	1	83	109	15.5862
((((.((((........))))....)	chr19:54970414-54970640(+)$1	1	124	150	15.8841
((((((.((........)))))))..	chr11:61643981-61644283(-)$1	1	39	65	13.4440
((..(((.(........).)))...)	chr19:54659079-54659370(+)$1	1	96	122	15.7857
(((....((........)).))))))	chr16:89762409-89762674(+)$1	1	192	218	15.7562
)))))((((........))))...(.	chr11:18034093-18034427(-)$1	1	117	143	13.0484
.(((..(((........))))))...	chr22:50020587-50020829(-)$1	1	172	198	16.1851
(((((((((........)))))))))	chr8:66630269-66630540(-)$1	1	4	30	16.8277
((.((((((........)))))).))	chr3:128205802-128206058(-)$1	1	17	43	15.0699
...((((((........))))))...	chr17:30535256-30535553(+)$1	1	181	207	15.4220
((((.((((........)))).))))	chr1:229476028-229476309(-)$1	1	119	145	15.3803
(((((((((........))....)))	chr9:139730723-139730966(+)$1	1	209	235	15.8213
((((.((((........)))).))))	chr4:2935863-2936146(-)$1	1	162	188	15.3803
(.(((((((........))))))).)	chr19:972870-973132(+)$1	1	18	44	15.9461
(((((..((........))))))).)	chrX:153609619-153609859(+)$1	1	111	137	15.3624
(((..((((........)))).))))	chr1:12072162-12072449(+)$1	1	251	277	15.6108
(((((((((........)))))))))	chr8:66630493-66630754(-)$1	1	15	41	16.8277
))(((((((........)))))))..	chr19:10464393-10464674(-)$1	1	112	138	14.4518
(((.(((((........))))).)))	chr8:71314118-71314442(-)$1	1	276	302	15.6121
(((((((((........)))))....	chr1:36787652-36787922(+)$1	1	111	137	13.5975
.((.(((.((........).).))).	chr19:2096734-2097022(+)$1	1	93	119	13.2209
((..(((((........)))))..))	chrX:48436905-48437208(+)$1	1	277	303	15.2378
(((((((.(........))))))...	chr1:11721384-11721640(+)$1	1	182	208	16.2420
(((((((.(........))))))...	chr1:11721497-11721776(+)$1	1	69	95	16.2420
(.((.((.(........).)).)).)	chr22:19957770-19958058(-)$1	1	253	279	13.8922
((((((.((........))..)))))	chr16:28847498-28847748(+)$1	1	129	155	14.3460
(((((((((........)))))))))	chr12:391410-391737(-)$1	1	27	53	16.1553
(((..((((........)))).))))	chr1:113247363-113247656(-)$1	1	62	88	16.5658
(...(((((........)))))...)	chr9:139904835-139905113(-)$1	1	133	159	16.3975
))(((((((........)))).))).	chr2:192551331-192551618(+)$1	1	244	270	14.9953
((((((.((........)).))))))	chr17:76122887-76123205(-)$1	1	171	197	14.8790
.(((.((((........)))).))).	chr9:35690594-35690856(-)$1	1	97	123	14.4227
))(((((((........)))))))..	chr12:16500572-16500872(+)$1	1	269	295	14.2368
((.((((((........)))))))))	chrX:135594252-135594580(+)$1	1	211	237	14.8883
(((....((........)).))))))	chr16:89762511-89762772(+)$1	1	90	116	15.7562
(((((.(((........))))).)))	chr3:49049846-49050119(+)$1	1	163	189	13.8288
(((((((((........)))))))))	chr1:158580623-158580847(-)$1	1	103	129	16.8277
((.((((((........)).))))))	chr4:718790-719023(+)$1	1	177	203	15.3402
(((((((.(........)..))))))	chr19:1878701-1878984(-)$1	1	106	132	15.7177
((((.((((........)))).))))	chr22:40804936-40805223(+)$1	1	224	250	16.5083
.(..(((((.........)))))...	chr8:145650479-145650758(-)$1	1	25	51	10.2584
(((..((((........))))..)))	chr6:32135674-32135933(+)$1	1	131	157	15.9539
((((.((((........)))))))).	chr5:137274596-137274855(-)$1	1	58	84	15.2015
((.((((((........)).))))..	chr12:132402684-132403012(+)$1	1	221	247	15.6412

#PSSM
g : 0.16	d : 0.14	e : 0.12	c : 0.10	f : 0.09	i : 0.07	b : 0.05	[ : 0.05	= : 0.05	$ : 0.01	G : 0.01	F : 0.01	" : 0.01	# : 0.01	h : 0.01	: : 0.01	
g : 0.14	c : 0.14	d : 0.12	e : 0.12	b : 0.07	f : 0.07	[ : 0.05	i : 0.05	= : 0.05	! : 0.03	a : 0.03	$ : 0.01	# : 0.01	h : 0.01	" : 0.01	
g : 0.20	d : 0.14	! : 0.10	e : 0.10	[ : 0.09	c : 0.09	= : 0.05	f : 0.05	i : 0.03	b : 0.03	$ : 0.01	# : 0.01	h : 0.01	" : 0.01	
f : 0.16	d : 0.14	g : 0.14	! : 0.14	c : 0.07	e : 0.07	[ : 0.05	= : 0.05	i : 0.03	# : 0.03	b : 0.03	h : 0.01	" : 0.01	
e : 0.21	f : 0.16	[ : 0.14	g : 0.10	! : 0.09	d : 0.05	c : 0.05	= : 0.05	i : 0.03	# : 0.03	" : 0.01	b : 0.01	
d : 0.29	e : 0.20	f : 0.16	g : 0.09	= : 0.05	i : 0.03	c : 0.03	# : 0.03	! : 0.03	" : 0.01	b : 0.01	[ : 0.01	
d : 0.27	e : 0.18	f : 0.12	g : 0.09	[ : 0.07	c : 0.07	= : 0.05	i : 0.03	# : 0.03	" : 0.01	! : 0.01	b : 0.01	
d : 0.23	b : 0.20	e : 0.14	f : 0.12	[ : 0.10	= : 0.05	g : 0.05	i : 0.03	c : 0.03	
d : 0.23	b : 0.20	e : 0.14	f : 0.12	a : 0.10	= : 0.05	g : 0.05	i : 0.03	c : 0.03	
q : 0.96	a : 0.01	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
d : 0.23	b : 0.20	f : 0.12	e : 0.12	a : 0.09	= : 0.05	g : 0.05	i : 0.03	c : 0.03	q : 0.01	r : 0.01	
d : 0.23	b : 0.20	e : 0.18	f : 0.12	= : 0.05	g : 0.05	i : 0.03	] : 0.03	c : 0.03	a : 0.01	2 : 0.01	
d : 0.23	e : 0.21	f : 0.12	] : 0.12	c : 0.05	= : 0.05	g : 0.05	i : 0.03	2 : 0.03	3 : 0.01	4 : 0.01	b : 0.01	
d : 0.29	e : 0.21	f : 0.14	g : 0.10	= : 0.05	i : 0.03	c : 0.03	b : 0.03	3 : 0.01	4 : 0.01	a : 0.01	2 : 0.01	
e : 0.21	] : 0.18	f : 0.16	g : 0.10	d : 0.07	4 : 0.05	= : 0.05	i : 0.03	c : 0.03	3 : 0.01	: : 0.01	b : 0.01	2 : 0.01	
f : 0.16	g : 0.16	d : 0.12	e : 0.10	2 : 0.07	c : 0.07	4 : 0.05	] : 0.05	= : 0.05	i : 0.03	3 : 0.03	: : 0.01	7 : 0.01	b : 0.01	
g : 0.18	d : 0.14	c : 0.09	4 : 0.09	e : 0.09	] : 0.07	3 : 0.07	2 : 0.05	= : 0.05	f : 0.05	i : 0.03	: : 0.01	7 : 0.01	b : 0.01	
c : 0.14	g : 0.14	4 : 0.10	d : 0.09	3 : 0.09	f : 0.07	e : 0.05	: : 0.05	= : 0.05	] : 0.05	b : 0.03	a : 0.03	i : 0.03	7 : 0.01	
d : 0.14	g : 0.14	c : 0.09	4 : 0.09	: : 0.09	f : 0.09	b : 0.05	e : 0.05	i : 0.05	3 : 0.05	= : 0.05	] : 0.01	! : 0.01	7 : 0.01	2 : 0.01	

#score	840.3086024936805
#seq	55
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_UTR_m2_run1.txt

#BEAR
eeeeeooooooeeee	chr1:241795778-241796010(-)$1	232	33	48	11.6345
eeeeeooooooeeee	chr5:180683806-180684080(+)$1	274	78	93	11.6345
c[cccooooooccc]	chr1:46073433-46073660(+)$1	227	58	73	10.8549
b[cccooooooccc2	chr9:126030698-126030948(-)$1	250	142	157	10.3884
cddddoooooodddd	chrX:135955405-135955687(-)$1	282	53	68	11.1762
dddddoooooodddd	chr1:203768515-203768778(+)$1	263	130	145	11.0778
:ddddoooooodddd	chrX:135954808-135955056(-)$1	248	185	200	10.2926
eeeeeooooooeeee	chrX:135956798-135957053(-)$1	255	26	41	11.6345
c[cccooooooccc]	chr1:46073460-46073739(+)$1	279	31	46	10.8549
fffffooooooffff	chr1:203769764-203769994(+)$1	230	3	18	9.5581
gg[bboooooobb]g	chrX:153904606-153904922(-)$1	316	132	147	9.2343
eeeeeooooooeeee	chr3:152057867-152058133(+)$1	266	181	196	11.6345
eeeeeooooooeeee	chr4:761607-761876(-)$1	269	53	68	11.6345
!ddddoooooodddd	chr3:42679728-42679994(+)$1	266	182	197	11.1452

#otherMatches

#Seq PSSM
AUUGUGAAGUAACAA	chr1:241795778-241796010(-)$1	232	33	48	11.6345
UUGAGAAAAGCCUCA	chr5:180683806-180684080(+)$1	274	78	93	11.6345
AGUCAAGCCAGUGGA	chr1:46073433-46073660(+)$1	227	58	73	10.8549
ugGGCAGAggagccg	chr9:126030698-126030948(-)$1	250	142	157	10.3884
UUUGGCCAAAACCAA	chrX:135955405-135955687(-)$1	282	53	68	11.1762
CACCAUAGUCUUGGU	chr1:203768515-203768778(+)$1	263	130	145	11.0778
CCAGCCAUGAAGUUG	chrX:135954808-135955056(-)$1	248	185	200	10.2926
UUGCUUAAAUUGGCA	chrX:135956798-135957053(-)$1	255	26	41	11.6345
AGUCAAGCCAGUGGA	chr1:46073460-46073739(+)$1	279	31	46	10.8549
CAUAGCUAUAACUGU	chr1:203769764-203769994(+)$1	230	3	18	9.5581
GGGUCCUUAGUGAGC	chrX:153904606-153904922(-)$1	316	132	147	9.2343
ugcaggcaucacugc	chr3:152057867-152058133(+)$1	266	181	196	11.6345
UUCAGUUUCAUCUGA	chr4:761607-761876(-)$1	269	53	68	11.6345
AUCCUCUGACAAGGA	chr3:42679728-42679994(+)$1	266	182	197	11.1452

#DB
(((((......))))	chr1:241795778-241796010(-)$1	1	33	48	11.6345
(((((......))))	chr5:180683806-180684080(+)$1	1	78	93	11.6345
(.(((......))).	chr1:46073433-46073660(+)$1	1	58	73	10.8549
(.(((......))).	chr9:126030698-126030948(-)$1	1	142	157	10.3884
)((((......))))	chrX:135955405-135955687(-)$1	1	53	68	11.1762
(((((......))))	chr1:203768515-203768778(+)$1	1	130	145	11.0778
.((((......))))	chrX:135954808-135955056(-)$1	1	185	200	10.2926
(((((......))))	chrX:135956798-135957053(-)$1	1	26	41	11.6345
(.(((......))).	chr1:46073460-46073739(+)$1	1	31	46	10.8549
(((((......))))	chr1:203769764-203769994(+)$1	1	3	18	9.5581
((.((......)).)	chrX:153904606-153904922(-)$1	1	132	147	9.2343
(((((......))))	chr3:152057867-152058133(+)$1	1	181	196	11.6345
(((((......))))	chr4:761607-761876(-)$1	1	53	68	11.6345
.((((......))))	chr3:42679728-42679994(+)$1	1	182	197	11.1452

#PSSM
e : 0.35	c : 0.21	b : 0.07	d : 0.07	: : 0.07	f : 0.07	g : 0.07	! : 0.07	
e : 0.35	d : 0.28	[ : 0.21	f : 0.07	g : 0.07	
e : 0.35	d : 0.28	c : 0.21	f : 0.07	[ : 0.07	
e : 0.35	d : 0.28	c : 0.21	f : 0.07	b : 0.07	
e : 0.35	d : 0.28	c : 0.21	f : 0.07	b : 0.07	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
e : 0.35	d : 0.28	c : 0.21	f : 0.07	b : 0.07	
e : 0.35	d : 0.28	c : 0.21	f : 0.07	b : 0.07	
e : 0.35	d : 0.28	c : 0.21	f : 0.07	] : 0.07	
e : 0.35	d : 0.28	] : 0.14	2 : 0.07	f : 0.07	g : 0.07	

#score	152.7555682965785
#seq	14
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_CDS_m1_run2.txt

#BEAR
e[ccc!!cccbbccc[a[ccclllccc]a]ccc]bb]ccc	chr8:145065267-145065499(+)$1	232	23	63	13.6698
ff"""ggggggg$$$$$cccmmmmccc333ggggggg]ff	chr3:184033801-184034058(+)$1	257	4	44	17.3269
[ccc!!a[ffffff"""cccmmmmccc333ffffffa22c	chr20:57607173-57607399(-)$1	226	119	159	15.7515
!==========iiiiiiiiimmmmiiiiiiiii]======	chr6:31896440-31896715(+)$1	275	147	187	17.9624
fff:============!!ccclllccc]============	chr10:93558349-93558625(+)$1	276	76	116	16.5114
=========="""ccc[cccmmmmccc]ccc=========	chr22:36902341-36902575(-)$1	234	43	83	19.2696
[ccc[ggggggg$$$$$bboooooobb333ggggggg22c	chr2:101869461-101869705(+)$1	244	168	208	14.1215
ee"""=============[bblllbb]=============	chr10:91007209-91007496(-)$1	287	123	163	15.8108
###eeeee[===========mmmm===========eeeee	chr16:1876609-1876831(-)$1	222	92	132	16.2866
eeeeeeeee"""bb!!ddddmmmmdddd]bb333eeeee]	chr4:155533621-155533860(-)$1	239	39	79	13.5181
####iiiiiiiii[aeeeeellleeeee22a]iiiiiiii	chr2:178129155-178129402(-)$1	247	138	178	14.7582
=======[ffffff[eeeeemmmmeeeee333ffffff==	chr20:32031255-32031659(-)$1	404	113	153	14.6972
#bbiiiiiiiii"""eeeeeooooooeeeee4444iiiii	chr19:45419352-45419597(+)$1	245	189	229	14.2457
eeeee]a==========a[annnnna]a]==========:	chr2:75185689-75185955(+)$1	266	186	226	13.5800
iiiiiiiii[a[addddoooooodddd]a]aiiiiiiiii	chr20:18118431-18118708(+)$1	277	112	152	13.7819
ddd]bb:ggggggg"""cccmmmmccc4444ggggggggg	chr12:56473908-56474191(+)$1	283	66	106	15.5860
e[bb!!iiiiiiiii!!cccmmmmccc22iiiiiiiii]b	chr19:913005-913308(-)$1	303	88	128	17.5638
"bb[eeeee"""bb"""cccmmmmccc333bb]eeeee]b	chr2:98262443-98262753(+)$1	310	21	61	15.7980
iiiiiiii"""ccc[ddddnnnnndddd22ccciiiiiii	chr2:241075536-241075751(-)$1	215	87	127	14.0034
c[iiiiiiiii$$$$$ddddmmmmddddiiiiiiiii777	chr18:77703317-77703551(-)$1	234	95	135	14.3123
dddeeeee[dddd!!ccc[ammmma]cccdddd]eeeee2	chr8:74888335-74888618(+)$1	283	93	133	12.4903
hhh==========[bbddddmmmmdddd333bb]======	chr11:6704334-6704593(-)$1	259	63	103	16.7875
[bbgggggggcccccc[cccnnnnncccccc]ccc]gggg	chrX:47003881-47004170(-)$1	289	7	47	13.5330
ee[bb"""dddd"""cccooooooccc4444dddd333bb	chr2:216300376-216300581(-)$1	205	32	72	13.3938
diiiiiiiii$$$$$eeeeemmmmeeeee4444iiiiiii	chrX:152913560-152913806(+)$1	246	62	102	16.0511
HHffffffccc"""bb[cccmmmmcccbb333ccc]ffff	chr19:917527-917780(+)$1	253	142	182	14.0230
ccc[ddddcccccc[ccc[ammmma]ccc]ccc4444ccc	chr1:32042667-32042971(+)$1	304	185	225	14.3787
!!eeeee!!a[bbddddcccmmmmccc4444dddd]bb]a	chr2:216946264-216946520(-)$1	256	16	56	14.3793
!bb"""ffffff!!ccccccmmmmccc]ccc4444fffff	chr2:231905958-231906220(+)$1	262	96	136	14.8523
iiiiiiii[bb[ccc!!cccmmmmccc22cccbb]iiiii	chr17:36886549-36886760(+)$1	211	60	100	16.9640
h"""ggggggg[ccc"""ccclllccc333ccc]gggggg	chr12:57522647-57522913(+)$1	266	117	157	16.7732
bb]ccc:ggggggg!!acccmmmmccc]a22ggggggg::	chr1:212459345-212459687(+)$1	342	240	280	13.2091
ggggggeeeee[ccc[ddddmmmmdddd333ccc]eeeee	chr19:50169175-50169425(+)$1	250	188	228	15.0493
ggg[dddd[ccc####ddddmmmmdddd4444ccc]dddd	chr4:1801020-1801278(+)$1	258	130	170	15.1434
Iccc!!cccdddd"""ddddmmmmdddd333dddd]ccc]	chr10:75541727-75541997(+)$1	270	27	67	13.6237
eeeee[bb"""a[gggggggmmmmggggggg]a333bb22	chr19:18392183-18392459(-)$1	276	83	123	13.0896
ggggggg"""bb"""eeeeemmmmeeeee333bb]ggggg	chr2:132249685-132249949(-)$1	264	210	250	15.4441
e]a]ccc===========[ammmma]===========FFF	chr12:42538139-42538377(-)$1	238	35	75	15.3600
eeeeeeeee[a[a[bbcccooooooccc]bb]a]a22eee	chr7:44887465-44887726(-)$1	261	177	217	12.2642
[ffffff[ccc"""ccc[bbmmmmbb333ccc333cccff	chr3:53164257-53164547(-)$1	290	187	227	14.7481
eeeaeeeeeggggggg[cccmmmmccc]ggggggg:a[bb	chr4:1795513-1795816(+)$1	303	86	126	13.5814
iiiiiiii[bb"""a!!aooooooa22a333bb]iiiiii	chr14:68159609-68159864(-)$1	255	8	48	16.0559
f!!bb[a[dddd$$$$$cccmmmmccc4444dddd]a]bb	chr17:42399720-42399960(-)$1	240	64	104	14.8463
ccc[ccc!!ffffff!!cccmmmmccc4444ffffff]cc	chr19:18717334-18717554(-)$1	220	73	113	15.5401
"""bbeeeeeccc[a"""bbmmmmbb4444a]ccc]eeee	chr2:130947962-130948214(+)$1	252	115	155	14.6628
ccc[eeeeeeeeee[a[cccmmmmccc]a]eeeee]eeee	chr17:40688193-40688478(+)$1	285	163	203	14.1962
ee[ffffff===========oooooo===========666	chr4:166300354-166300601(+)$1	247	71	111	13.4605
bb]cccdddd[iiiiiiiiiooooooiiiiiiiii]dddd	chr14:105219486-105219756(+)$1	270	196	236	12.1517
ddd[iiiiiiiii!!eeeeemmmmeeeee]iiiiiiiii]	chr1:11986046-11986299(-)$1	253	79	119	15.9734
:===========!!ccc[bbmmmmbbccc===========	chrX:152913424-152913730(+)$1	306	6	46	16.6868
ggg!!ffffff[ccc!!cccmmmmccc]ccc]ffffff22	chr7:56131875-56132168(+)$1	293	234	274	15.0775
aiiiiiiiii####eeeee[allla]eeeeeiiiiiiiii	chr11:67374353-67374627(+)$1	274	216	256	14.7765
a!!cccccc!!ccc[bb[ccclllccc]bbccc]ccc]cc	chr15:40763446-40763701(+)$1	255	133	173	13.3152
==========!!a!!eeeeemmmmeeeee22a22======	chr1:15911303-15911628(-)$1	325	246	286	16.6507
ggggggg[a[bbccc!!cccmmmmccc22ccc]bbagggg	chr17:1530948-1531255(-)$1	307	41	81	15.7852
b[dddd[ccc"""ccc[ccclllcccccc333ccc22ddd	chr17:635834-636106(+)$1	272	142	182	13.8094

#otherMatches

#Seq PSSM
GGUGGAGUUGCGCAGGGCUGGGUCCCGACGCUGUCGUCAA	chr8:145065267-145065499(+)$1	232	23	63	13.6698
GGUAUGUGGAUUGUUAAGGCUCUUGCCGCAGAUCUGCUCC	chr3:184033801-184034058(+)$1	257	4	44	17.3269
ACUCAGGUAGGCCCAGGCCUCCAGAGGGAAGGGCUUCGCG	chr20:57607173-57607399(-)$1	226	119	159	15.7515
UGUGAGCUUCGAGUGUGAGGAUGGCUUCAUAUUGCGGGGC	chr6:31896440-31896715(+)$1	275	147	187	17.9624
GGCUGUGGCGGCGGCCAGGAUCAUGUCGGGUCGCCGCUGC	chr10:93558349-93558625(+)$1	276	76	116	16.5114
GGGCCUCGUGUCUCCCAGCCGCCGGGCCGGGUGCGAGGCC	chr22:36902341-36902575(-)$1	234	43	83	19.2696
CUCGAGCCUGCUGAGCAUCAUAUCGGAGGAGGCGGGCGGC	chr2:101869461-101869705(+)$1	244	168	208	14.1215
UUUGGUUCUCUGGACCCUGCAUUCUGAGGGGUCUGGAGGG	chr10:91007209-91007496(-)$1	287	123	163	15.8108
GAGCCGCCUGCGCCCGCCGAGGCCUCGGUgggugcggcgg	chr16:1876609-1876831(-)$1	222	92	132	16.2866
GAGCCUGAGAGGUGACAGUGCUGACACUACAAGGCUCGGA	chr4:155533621-155533860(-)$1	239	39	79	13.5181
AGCAGGUGCUGCCUCGGCCCUCUGGGCCCUGCGGUGGUGC	chr2:178129155-178129402(-)$1	247	138	178	14.7582
GGUAGGGUGGCGGCUGGCCCAGCCGGGCCCCCGCUGCCCU	chr20:32031255-32031659(-)$1	404	113	153	14.6972
AUCAGCCGCAUCAAACAGAGUGAACUUUCUGCCAAGAUGC	chr19:45419352-45419597(+)$1	245	189	229	14.2457
GCCUCGCAGCCCCAGGCCCCAACGAGUGUGCCUGGGGCUC	chr2:75185689-75185955(+)$1	266	186	226	13.5800
GCGGCCUCUGCGCCUCGGGCGGGCGGGAGAGAGAGGCCGC	chr20:18118431-18118708(+)$1	277	112	152	13.7819
CCGCAGCAGCCACCAAUUCGCCAGCGGUUCAGGUGGCUCU	chr12:56473908-56474191(+)$1	283	66	106	15.5860
CACUUCCUGCCCGGCCCGGUGAAGGCCCUGCCGGGCGGCG	chr19:913005-913308(-)$1	303	88	128	17.5638
CGAGAGGAGAAAGAAGCCCGCCCCCGGAAGUCCCUCCUGU	chr2:98262443-98262753(+)$1	310	21	61	15.7980
CCGGGCCCUACGUGGACCUGGACGAGGUGGCACGGGCCCG	chr2:241075536-241075751(-)$1	215	87	127	14.0034
AAGGCGCUUUGAGUCCCCGCUGCUGUGGCAGAGCGCCAUC	chr18:77703317-77703551(-)$1	234	95	135	14.3123
CACUUGUGCGGCAGUCGGGUGGGAAGCCGUGUCUCGCAGU	chr8:74888335-74888618(+)$1	283	93	133	12.4903
AACAUGCGGCUGUCGGUCGCUGCAGCGAUCUCCCAUGGCC	chr11:6704334-6704593(-)$1	259	63	103	16.7875
CGAUGAUUGUCGCGCUCGCACCCACUGCAGCUGCGCACAG	chrX:47003881-47004170(-)$1	289	7	47	13.5330
GCGUCUCUCCCCCACCGUCUCAACAUGCUUAGGGGUCCGG	chr2:216300376-216300581(-)$1	205	32	72	13.3938
GCCCCCGCCUGCCCCCGUGCUCCUGUACGACCAgggcggg	chrX:152913560-152913806(+)$1	246	62	102	16.0511
CCUGGUGGGGAACUCGCUGGUCAUCUACGUCAUCUGCCGC	chr19:917527-917780(+)$1	253	142	182	14.0230
UGCACCUGCGGGGCAUCCGGGACGCGGGAGGCCGGUACUG	chr1:32042667-32042971(+)$1	304	185	225	14.3787
AAGGGCCUGCGCUCAGCUGCUCUGGCACCCCGCUGCAGGG	chr2:216946264-216946520(-)$1	256	16	56	14.3793
UGCUUUUCCUGGGGUCCCUGGAGCCGGAGGAAGAACCAGG	chr2:231905958-231906220(+)$1	262	96	136	14.8523
ccaugcgcggcgcgggggcgauccugcggccggCGGCGCG	chr17:36886549-36886760(+)$1	211	60	100	16.9640
GCUCCUGCUGCUGCCCCUGCUCUCAGCUCUGGUCGCGGCG	chr12:57522647-57522913(+)$1	266	117	157	16.7732
GCAGCCAGGGCAGCCAGGCAGAGCUGCACCCGCUGCCCCA	chr1:212459345-212459687(+)$1	342	240	280	13.2091
GAGGAGGGGGCCGGGAUCCAGUGGUGGGCACCCCAGUCCC	chr19:50169175-50169425(+)$1	250	188	228	15.0493
CUGCAGGUGCUGAAUGCCUCCCACGAGGACUCCGGGGCCU	chr4:1801020-1801278(+)$1	258	130	170	15.1434
CGCGCCGAUUCGUCCAGCCCGUAGGGGUCACGCGAGGUCA	chr10:75541727-75541997(+)$1	270	27	67	13.6237
ggccgagcggacgggggggcgcgggccccccgggaggccg	chr19:18392183-18392459(-)$1	276	83	123	13.0896
CCCGACCUCUGCUCUCCGGGUACGCCCGGCCCGCUGGUCG	chr2:132249685-132249949(-)$1	264	210	250	15.4441
GCGGUGGCGGGAAGCCGCAGGCCGCGGUGGCUUCCUGGCU	chr12:42538139-42538377(-)$1	238	35	75	15.3600
gccgggggcacgggGCCUGGGAGAGCAGAGCGCGGAGGCC	chr7:44887465-44887726(-)$1	261	177	217	12.2642
CCUGCAGGUACUCUCUGCCCUUCAGGUUCCAGCUUGUACU	chr3:53164257-53164547(-)$1	290	187	227	14.7481
ggccguggggggcAGCAUGCCCGCGCGCGCUGCCUGAGGA	chr4:1795513-1795816(+)$1	303	86	126	13.5814
UCAGCCAGAAGACACAGGGAGUUGCAGGAACCUACUGGCU	chr14:68159609-68159864(-)$1	255	8	48	16.0559
GGAAGUGCCUCCUGUAUUGCAAUGGUGUCCUGGAGCCUCU	chr17:42399720-42399960(-)$1	240	64	104	14.8463
ggcagcgccggccccaugcccgccggccgccggggccccg	chr19:18717334-18717554(-)$1	220	73	113	15.5401
UGGCCCUGGCGGAACGCAGCAGCCGCGAAGGAUCCAGCCA	chr2:130947962-130948214(+)$1	252	115	155	14.6628
ggcgacgaggcccgggaggcggcggccgugcgggcgcucg	chr17:40688193-40688478(+)$1	285	163	203	14.1962
CCUGCGGGUGGCUCCUGGGCGCCGAAGCCCAGGAgcccgg	chr4:166300354-166300601(+)$1	247	71	111	13.4605
UCCGCUGCGUCGGGGCCUGGAACGGGCCGGGCCUCAGCGU	chr14:105219486-105219756(+)$1	270	196	236	12.1517
GCUUGGCCUCCUGCUGCUGCUUCUGUGGUUUGGGGGGUcc	chr1:11986046-11986299(-)$1	253	79	119	15.9734
CCUGUGGCUGCGUCGGGAGCUGUCGCCCCCGCGGCCGCGG	chrX:152913424-152913730(+)$1	306	6	46	16.6868
GGGGAUGGGGCGCUCCGCCCUGACGGGAGAGAGCCUUAGG	chr7:56131875-56132168(+)$1	293	234	274	15.0775
CCACGGGUGUUUGGGGCCGGGUGUCGCGGCCGCGCCCGUG	chr11:67374353-67374627(+)$1	274	216	256	14.7765
GCUGCUCAUGAUCGAGCGGGGCAUCCUGGCCGAGAUGAAG	chr15:40763446-40763701(+)$1	255	133	173	13.3152
UCCGGGGCGCCGCCAGAGCCGCCAGGCUUCCGACGCGCCC	chr1:15911303-15911628(-)$1	325	246	286	16.6507
GUGGUGCAGAGCCGGAGCCGGAGCCGGAGCCGCGCCGCGC	chr17:1530948-1531255(-)$1	307	41	81	15.7852
GAGCCGCACCGACUGCGUGAUGAUCAGCACCAGGUACCGG	chr17:635834-636106(+)$1	272	142	182	13.8094

#DB
(.(((..((((((((.(.(((...))).).))).)).)))	chr8:145065267-145065499(+)$1	1	23	63	13.6698
((...(((((((.....(((....)))...))))))).))	chr3:184033801-184034058(+)$1	1	4	44	17.3269
.(((..(.((((((...(((....)))...)))))))..)	chr20:57607173-57607399(-)$1	1	119	159	15.7515
.(((((((((((((((((((....))))))))).))))))	chr6:31896440-31896715(+)$1	1	147	187	17.9624
))).((((((((((((..(((...))).))))))))))))	chr10:93558349-93558625(+)$1	1	76	116	16.5114
((((((((((...(((.(((....))).))))))))))))	chr22:36902341-36902575(-)$1	1	43	83	19.2696
.(((.(((((((.....((......))...)))))))..)	chr2:101869461-101869705(+)$1	1	168	208	14.1215
((...(((((((((((((.((...)).)))))))))))))	chr10:91007209-91007496(-)$1	1	123	163	15.8108
...(((((.(((((((((((....))))))))))))))))	chr16:1876609-1876831(-)$1	1	92	132	16.2866
(((((((((...((..((((....)))).))...))))).	chr4:155533621-155533860(-)$1	1	39	79	13.5181
....(((((((((.((((((...)))))..).))))))))	chr2:178129155-178129402(-)$1	1	138	178	14.7582
(((((((.((((((.(((((....)))))...))))))))	chr20:32031255-32031659(-)$1	1	113	153	14.6972
.(((((((((((...(((((......)))))....)))))	chr19:45419352-45419597(+)$1	1	189	229	14.2457
))))).)(((((((((((.(.....).).)))))))))).	chr2:75185689-75185955(+)$1	1	186	226	13.5800
(((((((((.(.(((((......)))).).))))))))))	chr20:18118431-18118708(+)$1	1	112	152	13.7819
))).)).(((((((...(((....)))....)))))))((	chr12:56473908-56474191(+)$1	1	66	106	15.5860
(.((..(((((((((..(((....)))..))))))))).)	chr19:913005-913308(-)$1	1	88	128	17.5638
.((.(((((...((...(((....)))...)).))))).)	chr2:98262443-98262753(+)$1	1	21	61	15.7980
((((((((...(((.((((.....))))..))))))))))	chr2:241075536-241075751(-)$1	1	87	127	14.0034
(.(((((((((.....((((....)))))))))))))...	chr18:77703317-77703551(-)$1	1	95	135	14.3123
((((((((.((((..(((.(....).))))))).))))).	chr8:74888335-74888618(+)$1	1	93	133	12.4903
)))((((((((((.((((((....))))...)).))))))	chr11:6704334-6704593(-)$1	1	63	103	16.7875
.(((((((((((((((.(((.....)))))).))).))))	chrX:47003881-47004170(-)$1	1	7	47	13.5330
((.((...((((...(((......)))....))))...))	chr2:216300376-216300581(-)$1	1	32	72	13.3938
((((((((((.....(((((....)))))....)))))))	chrX:152913560-152913806(+)$1	1	62	102	16.0511
))(((((((((...((.(((....)))))...))).))))	chr19:917527-917780(+)$1	1	142	182	14.0230
(((.((((((((((.(((.(....).))).)))....)))	chr1:32042667-32042971(+)$1	1	185	225	14.3787
..(((((..(.(((((((((....)))....)))).)).)	chr2:216946264-216946520(-)$1	1	16	56	14.3793
.((...((((((..((((((....))).)))....)))))	chr2:231905958-231906220(+)$1	1	96	136	14.8523
((((((((.((.(((..(((....)))..))))).)))))	chr17:36886549-36886760(+)$1	1	60	100	16.9640
(...(((((((.(((...(((...)))...))).))))))	chr12:57522647-57522913(+)$1	1	117	157	16.7732
)).))).(((((((..((((....))).)..)))))))..	chr1:212459345-212459687(+)$1	1	240	280	13.2091
(((((((((((.(((.((((....))))...))).)))))	chr19:50169175-50169425(+)$1	1	188	228	15.0493
(((.((((.(((....((((....))))....))).))))	chr4:1801020-1801278(+)$1	1	130	170	15.1434
((((..(((((((...((((....))))...)))).))).	chr10:75541727-75541997(+)$1	1	27	67	13.6237
(((((.((...(.(((((((....))))))).)...))..	chr19:18392183-18392459(-)$1	1	83	123	13.0896
(((((((...((...(((((....)))))...)).)))))	chr2:132249685-132249949(-)$1	1	210	250	15.4441
).).)))(((((((((((.(....).)))))))))))(((	chr12:42538139-42538377(-)$1	1	35	75	15.3600
))))(((((.(.(.(((((......))).)).).)..)))	chr7:44887465-44887726(-)$1	1	177	217	12.2642
.((((((.(((...(((.((....))...)))...)))))	chr3:53164257-53164547(-)$1	1	187	227	14.7481
)))))))))(((((((.(((....))).))))))).(.((	chr4:1795513-1795816(+)$1	1	86	126	13.5814
((((((((.((...(..(......)..)...)).))))))	chr14:68159609-68159864(-)$1	1	8	48	16.0559
(..((.(.((((.....(((....)))....)))).).))	chr17:42399720-42399960(-)$1	1	64	104	14.8463
(((.(((..((((((..(((....)))....)))))).))	chr19:18717334-18717554(-)$1	1	73	113	15.5401
...((((((((((.(...((....))....).))).))))	chr2:130947962-130948214(+)$1	1	115	155	14.6628
(((.((((((((((.(.(((....))).).))))).))))	chr17:40688193-40688478(+)$1	1	163	203	14.1962
((.(((((((((((((((((......)))))))))))...	chr4:166300354-166300601(+)$1	1	71	111	13.4605
)).)))((((.(((((((((......))))))))).))))	chr14:105219486-105219756(+)$1	1	196	236	12.1517
(((.(((((((((..(((((....))))).))))))))).	chr1:11986046-11986299(-)$1	1	79	119	15.9734
.(((((((((((..(((.((....))))))))))))))))	chrX:152913424-152913730(+)$1	1	6	46	16.6868
(((..((((((.(((..(((....))).))).))))))..	chr7:56131875-56132168(+)$1	1	234	274	15.0775
)(((((((((....(((((.(...).))))))))))))))	chr11:67374353-67374627(+)$1	1	216	256	14.7765
(..((((((..(((.((.(((...))).))))).))).))	chr15:40763446-40763701(+)$1	1	133	173	13.3152
((((((((((..(..(((((....)))))..)..))))))	chr1:15911303-15911628(-)$1	1	246	286	16.6507
(((((((.(.(((((..(((....)))..))).)))))))	chr17:1530948-1531255(-)$1	1	41	81	15.7852
(.((((.(((...(((.(((...))))))...)))..)))	chr17:635834-636106(+)$1	1	142	182	13.8094

#PSSM
e : 0.19	g : 0.08	[ : 0.07	i : 0.07	d : 0.07	c : 0.07	f : 0.05	! : 0.05	= : 0.05	# : 0.05	b : 0.05	" : 0.03	h : 0.03	a : 0.03	H : 0.01	I : 0.01	: : 0.01	
e : 0.14	c : 0.10	b : 0.10	i : 0.10	= : 0.08	g : 0.08	[ : 0.07	f : 0.05	d : 0.05	! : 0.05	# : 0.03	" : 0.03	h : 0.01	H : 0.01	] : 0.01	
c : 0.12	i : 0.12	e : 0.10	= : 0.08	b : 0.08	g : 0.08	" : 0.07	d : 0.07	f : 0.05	# : 0.03	[ : 0.03	] : 0.03	! : 0.03	h : 0.01	a : 0.01	
i : 0.14	c : 0.12	e : 0.12	= : 0.10	[ : 0.10	" : 0.07	b : 0.07	g : 0.07	f : 0.05	] : 0.03	: : 0.01	# : 0.01	a : 0.01	! : 0.01	d : 0.01	
e : 0.17	i : 0.17	= : 0.12	c : 0.10	g : 0.08	! : 0.07	b : 0.07	" : 0.05	f : 0.05	d : 0.05	[ : 0.01	
i : 0.17	e : 0.16	= : 0.14	g : 0.12	c : 0.08	! : 0.07	f : 0.07	d : 0.05	" : 0.03	[ : 0.03	] : 0.01	b : 0.01	
i : 0.19	e : 0.17	= : 0.14	g : 0.10	f : 0.08	c : 0.07	a : 0.05	d : 0.05	: : 0.03	! : 0.01	" : 0.01	b : 0.01	[ : 0.01	
i : 0.19	= : 0.16	e : 0.16	g : 0.10	[ : 0.08	c : 0.07	f : 0.07	d : 0.05	" : 0.03	! : 0.03	b : 0.01	
= : 0.16	i : 0.14	c : 0.12	e : 0.12	g : 0.10	f : 0.08	[ : 0.08	" : 0.05	d : 0.05	! : 0.03	a : 0.01	
= : 0.19	g : 0.12	i : 0.12	c : 0.10	f : 0.08	" : 0.08	d : 0.08	[ : 0.05	e : 0.05	b : 0.03	a : 0.01	! : 0.01	
= : 0.16	g : 0.10	" : 0.10	c : 0.10	b : 0.08	f : 0.08	i : 0.08	d : 0.07	a : 0.03	[ : 0.03	e : 0.03	! : 0.03	$ : 0.01	# : 0.01	
= : 0.14	" : 0.12	i : 0.10	[ : 0.10	c : 0.10	g : 0.08	b : 0.07	f : 0.07	d : 0.07	$ : 0.03	a : 0.01	e : 0.01	# : 0.01	! : 0.01	
c : 0.19	" : 0.14	= : 0.12	$ : 0.08	i : 0.08	f : 0.05	b : 0.05	a : 0.05	g : 0.05	d : 0.03	! : 0.03	# : 0.03	[ : 0.01	e : 0.01	
c : 0.21	" : 0.12	= : 0.10	$ : 0.08	! : 0.08	[ : 0.07	g : 0.07	f : 0.05	i : 0.05	b : 0.03	d : 0.03	# : 0.03	e : 0.01	
c : 0.21	" : 0.12	= : 0.10	$ : 0.08	! : 0.08	[ : 0.08	i : 0.05	a : 0.05	b : 0.05	d : 0.03	g : 0.03	# : 0.01	f : 0.01	e : 0.01	
c : 0.16	! : 0.14	e : 0.14	" : 0.10	= : 0.10	$ : 0.07	b : 0.07	d : 0.05	[ : 0.03	i : 0.03	g : 0.03	# : 0.01	a : 0.01	
d : 0.16	e : 0.14	! : 0.12	c : 0.12	[ : 0.10	" : 0.08	= : 0.08	$ : 0.05	a : 0.03	i : 0.03	g : 0.01	b : 0.01	
c : 0.41	e : 0.14	d : 0.12	[ : 0.07	= : 0.07	i : 0.03	a : 0.03	" : 0.03	! : 0.01	b : 0.01	o : 0.01	g : 0.01	
c : 0.42	e : 0.14	d : 0.12	[ : 0.08	b : 0.07	o : 0.05	i : 0.03	= : 0.03	g : 0.01	
c : 0.41	e : 0.12	d : 0.10	o : 0.08	b : 0.07	a : 0.07	i : 0.03	= : 0.03	n : 0.01	g : 0.01	[ : 0.01	
m : 0.66	o : 0.14	c : 0.07	n : 0.05	l : 0.03	b : 0.01	a : 0.01	
m : 0.66	l : 0.14	o : 0.14	n : 0.05	
m : 0.66	l : 0.14	o : 0.14	n : 0.05	
m : 0.66	o : 0.12	l : 0.10	n : 0.05	e : 0.01	d : 0.01	c : 0.01	
c : 0.41	d : 0.14	e : 0.10	o : 0.08	a : 0.08	b : 0.07	n : 0.03	i : 0.01	= : 0.01	g : 0.01	
c : 0.44	d : 0.14	e : 0.10	b : 0.08	] : 0.07	o : 0.05	i : 0.01	= : 0.01	a : 0.01	g : 0.01	2 : 0.01	
c : 0.49	d : 0.14	e : 0.14	= : 0.05	i : 0.03	] : 0.03	b : 0.01	g : 0.01	3 : 0.01	2 : 0.01	4 : 0.01	
] : 0.17	e : 0.14	d : 0.12	3 : 0.10	4 : 0.10	c : 0.10	= : 0.07	2 : 0.05	i : 0.03	a : 0.03	b : 0.01	g : 0.01	
3 : 0.17	c : 0.14	e : 0.12	4 : 0.12	= : 0.08	2 : 0.08	a : 0.07	i : 0.05	] : 0.05	b : 0.03	g : 0.03	
3 : 0.23	4 : 0.14	= : 0.12	c : 0.12	] : 0.08	i : 0.07	2 : 0.07	b : 0.05	e : 0.03	g : 0.03	d : 0.01	
c : 0.21	3 : 0.14	= : 0.12	4 : 0.12	i : 0.08	g : 0.07	b : 0.05	a : 0.05	e : 0.05	2 : 0.03	f : 0.01	d : 0.01	
c : 0.16	= : 0.14	i : 0.12	] : 0.10	g : 0.08	3 : 0.08	d : 0.08	4 : 0.07	b : 0.05	f : 0.03	e : 0.01	a : 0.01	
c : 0.19	i : 0.14	= : 0.14	g : 0.08	d : 0.08	f : 0.07	b : 0.07	4 : 0.05	3 : 0.03	] : 0.03	a : 0.03	e : 0.01	2 : 0.01	
i : 0.16	] : 0.14	= : 0.14	c : 0.10	g : 0.08	f : 0.07	d : 0.07	3 : 0.05	4 : 0.05	b : 0.05	e : 0.03	2 : 0.01	
= : 0.19	i : 0.17	g : 0.10	c : 0.10	f : 0.07	e : 0.07	d : 0.07	4 : 0.05	] : 0.05	b : 0.03	3 : 0.03	a : 0.01	
i : 0.19	= : 0.17	] : 0.16	g : 0.10	f : 0.08	e : 0.08	3 : 0.03	2 : 0.03	c : 0.03	b : 0.01	4 : 0.01	: : 0.01	a : 0.01	
i : 0.19	= : 0.17	g : 0.14	e : 0.12	f : 0.08	a : 0.05	c : 0.05	b : 0.03	d : 0.03	2 : 0.03	] : 0.01	3 : 0.01	4 : 0.01	
i : 0.17	= : 0.14	e : 0.14	g : 0.10	c : 0.07	] : 0.07	f : 0.07	d : 0.05	2 : 0.03	b : 0.03	7 : 0.01	3 : 0.01	F : 0.01	[ : 0.01	6 : 0.01	
= : 0.16	i : 0.16	e : 0.12	c : 0.08	g : 0.08	f : 0.07	2 : 0.07	] : 0.05	b : 0.05	d : 0.05	7 : 0.01	: : 0.01	F : 0.01	6 : 0.01	
= : 0.14	i : 0.14	c : 0.10	e : 0.08	g : 0.08	b : 0.08	f : 0.07	] : 0.05	2 : 0.05	d : 0.05	: : 0.03	7 : 0.01	a : 0.01	F : 0.01	6 : 0.01	

#score	836.6849646787448
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_UTR_m3_run1.txt

#BEAR
!!gggggggqqqqqqqqggggggg	chr16:22345159-22345429(+)$1	270	135	159	16.6708
gggggg[bbqqqqqqqqbb]gggg	chr22:46753021-46753301(+)$1	280	95	119	15.5482
===ffffffqqqqqqqqffffff=	chrX:128580642-128580883(-)$1	241	117	141	15.5846
::gggggggqqqqqqqqggggggg	chr16:16236676-16236984(+)$1	308	9	33	14.6270
hhh!!ddddqqqqqqqqdddd333	chr12:108962801-108963098(+)$1	297	147	171	14.9819
dd[bb[cccqqqqqqqqccc22bb	chr1:19401090-19401381(-)$1	291	85	109	15.4291
%%eeeee[aqqqqqqqqa]eeeee	chr16:31202774-31203018(+)$1	244	117	141	14.0731
:ccc!!cccqqqqqqqqccc22cc	chr10:98718703-98718958(+)$1	255	114	138	15.8635
g[ccc[cccqqqqqqqqccc]ccc	chr12:120565198-120565470(-)$1	272	209	233	16.6981
""ccc!!bbqqqqqqqqbb22ccc	chr5:176524887-176525142(+)$1	255	149	173	15.2265
::gggggggqqqqqqqqggggggg	chr13:111530929-111531194(-)$1	265	61	85	14.6270
gg[bb[cccqqqqqqqqccc]bb2	chr22:31721747-31722016(-)$1	269	147	171	15.4320
eeeee[cccqqqqqqqqccc22ee	chr3:141644439-141644769(+)$1	330	223	247	15.9490
ff[ffffffqqqqqqqqfffffff	chr11:130013475-130013707(+)$1	232	120	144	15.0863
Dffffff[aqqqqqqqqa]fffff	chr9:117073042-117073285(+)$1	243	198	222	14.2998
ddd[eeeeeqqqqqqqqeeeeedd	chr1:21069176-21069401(-)$1	225	37	61	14.7785
d!!ffffffqqqqqqqqffffff2	chr9:139296669-139296966(-)$1	297	27	51	15.4231
dd!!eeeeeqqqqqqqqeeeee22	chr11:9302679-9302924(-)$1	245	11	35	14.9619
ccccc[cccqqqqqqqqccc]ccc	chr1:1322448-1322698(-)$1	250	125	149	16.5853
b[ccc[cccqqqqqqqqcccccc]	chr22:22051574-22051845(+)$1	271	87	111	16.2536
!ccc[ddddqqqqqqqqdddd]cc	chr3:122880763-122881037(+)$1	274	99	123	15.4750
hh"""ddddqqqqqqqqdddd22h	chr5:151190718-151190996(+)$1	278	210	234	14.2917
ddd"""cccqqqqqqqqccc4444	chr6:5109453-5109799(-)$1	346	94	118	15.9428
ccbb[ddddqqqqqqqqdddd]bb	chrX:48830065-48830384(-)$1	319	262	286	14.2946
ffffff[bbqqqqqqqqbb]ffff	chr9:117063464-117063685(+)$1	221	79	103	14.4721
ggggggcccqqqqqqqqccc22gg	chr16:572180-572439(+)$1	259	11	35	16.6909
eeee[ddddqqqqqqqqdddd]ee	chr3:156865631-156865911(-)$1	280	96	120	14.7219
###ffffffqqqqqqqqffffff7	chr3:184908318-184908722(-)$1	404	48	72	14.8421
cccceeeeeqqqqqqqqeeeee33	chr6:90352757-90353042(-)$1	285	16	40	15.5052
iiiiiiiiiqqqqqqqqiiiiiii	chr5:180662524-180662836(+)$1	312	108	132	16.1808
ggccc[cccqqqqqqqqccc]ccc	chr4:762542-762830(+)$1	288	62	86	16.5740
dbb[eeeeeqqqqqqqqeeeee]b	chr3:52435496-52435798(-)$1	302	175	199	14.5679
:ccc[ddddqqqqqqqqddddccc	chr2:242708025-242708286(+)$1	261	236	260	14.3295
ggggeeeeeqqqqqqqqeeeee]g	chr2:223806772-223807032(+)$1	260	158	182	15.5201
ggggg!!bbqqqqqqqqbb22ggg	chr15:34672850-34673106(-)$1	256	35	59	15.4449
dd####cccqqqqqqqqccc4444	chr2:192289686-192289977(+)$1	291	220	244	15.9507
%%gggggggqqqqqqqqggggggg	chr2:191799857-191800097(+)$1	240	27	51	15.3292
"""ffffffqqqqqqqqffffff2	chr11:47260381-47260658(+)$1	277	81	105	15.4363
cc[eeeeeaqqqqqqqqa]eeeee	chr11:43515700-43515969(+)$1	269	27	51	15.3165
c:gggggggqqqqqqqqggggggg	chr2:43449500-43449772(-)$1	272	168	192	15.4700
e!!ffffffqqqqqqqqffffff]	chr17:25640403-25640649(+)$1	246	17	41	15.5271
"ffffff[aqqqqqqqqa]fffff	chr22:38879361-38879617(-)$1	256	78	102	15.2629
dddd"""bbqqqqqqqqbb333dd	chr2:74652928-74653159(-)$1	231	47	71	14.6388
b[gggggggqqqqqqqqggggggg	chr6:31605331-31605608(+)$1	277	175	199	16.3147
"ccc!!cccqqqqqqqqccc22cc	chr1:110292650-110292899(-)$1	249	47	71	16.8055
c[gggggggqqqqqqqqggggggg	chr16:572066-572333(+)$1	267	97	121	16.5356
[eeeeecccqqqqqqqqccc]eee	chr15:34817807-34818074(-)$1	267	19	43	15.9247
"dddd[cccqqqqqqqqccc]ddd	chr11:77589683-77589936(-)$1	253	10	34	15.5578
iiiiiiiiiqqqqqqqqiiiiiii	chr1:70716913-70717126(+)$1	213	157	181	16.1808
""bb!!cccqqqqqqqqccc22bb	chr3:184103819-184104045(+)$1	226	45	69	15.8231
eee[eeeeeqqqqqqqqeeeee]e	chr6:134490429-134490718(-)$1	289	205	229	15.0380
=========qqqqqqqq=======	chr9:117074626-117074859(+)$1	233	186	210	16.5670
iiiiiiibbqqqqqqqqbb]iiii	chr6:159056205-159056458(+)$1	253	20	44	15.4500
ffff!!cccqqqqqqqqccc22ff	chr12:103232375-103232605(-)$1	230	109	133	16.1630
d[gggggggqqqqqqqqggggggg	chr16:69733296-69733546(+)$1	250	160	184	16.4668
dddd[ddddqqqqqqqqdddd]dd	chr7:45932705-45932963(+)$1	258	216	240	14.4726
eee[eeeeeqqqqqqqqeeeeeee	chr19:1009560-1009808(-)$1	248	210	234	14.9448

#otherMatches

#Seq PSSM
UUCAUUCUCAUAAUAAAGAGAGUG	chr16:22345159-22345429(+)$1	270	135	159	16.6708
GUGGGGUGGCCCGAGUUCCCCUUC	chr22:46753021-46753301(+)$1	280	95	119	15.5482
GGAAAAACGAAUUAAAAUGUUUUG	chrX:128580642-128580883(-)$1	241	117	141	15.5846
AAGGCAGCCAGAGCUGAGGCUGCC	chr16:16236676-16236984(+)$1	308	9	33	14.6270
ACUGAAAUUGAUAAUGAAGUUGCA	chr12:108962801-108963098(+)$1	297	147	171	14.9819
CGAAGCUGGCUUGCCUUCCACCCU	chr1:19401090-19401381(-)$1	291	85	109	15.4291
UCUGGUUCCCAUUAAAAGUGACCA	chr16:31202774-31203018(+)$1	244	117	141	14.0731
UCGGAGGUGGCUCAUCACACGGCU	chr10:98718703-98718958(+)$1	255	114	138	15.8635
AGACGGUGGAUCUCUGCCCAGUGU	chr12:120565198-120565470(-)$1	272	209	233	16.6981
ACGGGAGCAUUGGCCCCUGAGCCC	chr5:176524887-176525142(+)$1	255	149	173	15.2265
ACUGAGAGAAUUUUGACUCUCUUA	chr13:111530929-111531194(-)$1	265	61	85	14.6270
CAUGUGAGCAAGCCCAGGUUGACC	chr22:31721747-31722016(-)$1	269	147	171	15.4320
UUGGGUUACAUCAUAACGUGCUUC	chr3:141644439-141644769(+)$1	330	223	247	15.9490
AUGUAGUUUUCUUUUUUAAAUUAA	chr11:130013475-130013707(+)$1	232	120	144	15.0863
CGUGGCCUCUCAGCUCUGCGGCCA	chr9:117073042-117073285(+)$1	243	198	222	14.2998
UCUGUAGCCUAAAGUAUGGCUGGG	chr1:21069176-21069401(-)$1	225	37	61	14.7785
GUUCUGGAAUCAAUGUUUUCCAGU	chr9:139296669-139296966(-)$1	297	27	51	15.4231
GCGUGAGAUUAUUUAUUAUUUCUA	chr11:9302679-9302924(-)$1	245	11	35	14.9619
CUGGGGAGUACCUGAUGGCUGCCC	chr1:1322448-1322698(-)$1	250	125	149	16.5853
CACAUUCAAGUCCCCCAUUGGUGG	chr22:22051574-22051845(+)$1	271	87	111	16.2536
UUUCUGAAUUUCCACAUGUUCUGA	chr3:122880763-122881037(+)$1	274	99	123	15.4750
UUCUCGACAUAAAGCCUUGUCUAA	chr5:151190718-151190996(+)$1	278	210	234	14.2917
UUCAACUGACAAGCUGAUCAUUGA	chr6:5109453-5109799(-)$1	346	94	118	15.9428
UCUCGUUCUUUUCAACCAGGAGGA	chrX:48830065-48830384(-)$1	319	262	286	14.2946
ugggccgugguUUGUUGCAGGGUC	chr9:117063464-117063685(+)$1	221	79	103	14.4721
GAAGGUUGAUCAAUUUUUUAAUAC	chr16:572180-572439(+)$1	259	11	35	16.6909
UGGUCAGGUUCAAUUGUACUUUAU	chr3:156865631-156865911(-)$1	280	96	120	14.7219
UCCUUCAUUGUGGUGUAAAUGAAC	chr3:184908318-184908722(-)$1	404	48	72	14.8421
AUGGGAAGGUGAUUGCCCCUUUAU	chr6:90352757-90353042(-)$1	285	16	40	15.5052
CCUGGGGACGGGUUUGGGUCCCCA	chr5:180662524-180662836(+)$1	312	108	132	16.1808
AAGCUUCUUUUUACUUUGAGUAGC	chr4:762542-762830(+)$1	288	62	86	16.5740
AACUGUUCAGUGGCCUGUGAACUG	chr3:52435496-52435798(-)$1	302	175	199	14.5679
UCAGAGCCCAUUGUGAAGGGCCUG	chr2:242708025-242708286(+)$1	261	236	260	14.3295
GUUUUAAGAAGUUGAGAUCUUGUG	chr2:223806772-223807032(+)$1	260	158	182	15.5201
UGUUUAAAGGCCGAGAACUGGAAA	chr15:34672850-34673106(-)$1	256	35	59	15.4449
AUUUUUGUAUCUCAAGCUAUUUUC	chr2:192289686-192289977(+)$1	291	220	244	15.9507
AUUUUAUCUUAGUGUUUGGAUGAA	chr2:191799857-191800097(+)$1	240	27	51	15.3292
GCAAGCAGAGGUGGCGAUUUGUUA	chr11:47260381-47260658(+)$1	277	81	105	15.4363
UUCUGGAGCUGUGCUCUGUCUCCA	chr11:43515700-43515969(+)$1	269	27	51	15.3165
GUAAACAUUGUACUGUAAAUGUUU	chr2:43449500-43449772(-)$1	272	168	192	15.4700
AUUUUGUUUAUACUAAGGGACAAU	chr17:25640403-25640649(+)$1	246	17	41	15.5271
AAAGCUAUGUUACUAUUCUUAGUU	chr22:38879361-38879617(-)$1	256	78	102	15.2629
CCUCCCUGCACUAACCAGCUUUGA	chr2:74652928-74653159(-)$1	231	47	71	14.6388
UGUUUGUUAAAAAAGAGUAAUAAA	chr6:31605331-31605608(+)$1	277	175	199	16.3147
AGCAAACAGUGUCCCUUCUGGCUG	chr1:110292650-110292899(-)$1	249	47	71	16.8055
CAUGUAGAGUAGGUAUUUUUUAUA	chr16:572066-572333(+)$1	267	97	121	16.5356
AUGAUCCUUUUAUAAAUAGGAGAU	chr15:34817807-34818074(-)$1	267	19	43	15.9247
AGCACUUCACCUGGAAUUGAUGUG	chr11:77589683-77589936(-)$1	253	10	34	15.5578
GAAAGGUUAUUAUGCACUAACCUU	chr1:70716913-70717126(+)$1	213	157	181	16.1808
AACUGCUGCGGCACCUGGCAAAAG	chr3:184103819-184104045(+)$1	226	45	69	15.8231
CAUUUUAAUGUACUGUAAUUAACA	chr6:134490429-134490718(-)$1	289	205	229	15.0380
CUGCUUCUCAAAGCUCAGGGGGGC	chr9:117074626-117074859(+)$1	233	186	210	16.5670
UUACAAAAUGACUGUAAAUAUUUG	chr6:159056205-159056458(+)$1	253	20	44	15.4500
UGAUUCCAAUUACUACUUUGUUAU	chr12:103232375-103232605(-)$1	230	109	133	16.1630
UACGAAGAGUAUUCAUCUUCUUUG	chr16:69733296-69733546(+)$1	250	160	184	16.4668
AUAUCAUGAAACACUUCUCAUCAU	chr7:45932705-45932963(+)$1	258	216	240	14.4726
UUCCUGGCUCCCCGGUCGGCCAGA	chr19:1009560-1009808(-)$1	248	210	234	14.9448

#DB
..(((((((........)))))))	chr16:22345159-22345429(+)$1	1	135	159	16.6708
((((((.((........)).))))	chr22:46753021-46753301(+)$1	1	95	119	15.5482
)))((((((........))))))(	chrX:128580642-128580883(-)$1	1	117	141	15.5846
..(((((((........)))))))	chr16:16236676-16236984(+)$1	1	9	33	14.6270
(((..((((........))))...	chr12:108962801-108963098(+)$1	1	147	171	14.9819
((.((.(((........)))..))	chr1:19401090-19401381(-)$1	1	85	109	15.4291
..(((((.(........).)))))	chr16:31202774-31203018(+)$1	1	117	141	14.0731
.(((..(((........)))..))	chr10:98718703-98718958(+)$1	1	114	138	15.8635
(.(((.(((........))).)))	chr12:120565198-120565470(-)$1	1	209	233	16.6981
..(((..((........))..)))	chr5:176524887-176525142(+)$1	1	149	173	15.2265
..(((((((........)))))))	chr13:111530929-111531194(-)$1	1	61	85	14.6270
((.((.(((........))).)).	chr22:31721747-31722016(-)$1	1	147	171	15.4320
(((((.(((........)))..))	chr3:141644439-141644769(+)$1	1	223	247	15.9490
((.((((((........)))))))	chr11:130013475-130013707(+)$1	1	120	144	15.0863
)((((((.(........).)))))	chr9:117073042-117073285(+)$1	1	198	222	14.2998
(((.(((((........)))))))	chr1:21069176-21069401(-)$1	1	37	61	14.7785
(..((((((........)))))).	chr9:139296669-139296966(-)$1	1	27	51	15.4231
((..(((((........)))))..	chr11:9302679-9302924(-)$1	1	11	35	14.9619
))(((.(((........))).)))	chr1:1322448-1322698(-)$1	1	125	149	16.5853
(.(((.(((........)))))).	chr22:22051574-22051845(+)$1	1	87	111	16.2536
.(((.((((........)))).))	chr3:122880763-122881037(+)$1	1	99	123	15.4750
((...((((........))))..)	chr5:151190718-151190996(+)$1	1	210	234	14.2917
(((...(((........)))....	chr6:5109453-5109799(-)$1	1	94	118	15.9428
))((.((((........)))).))	chrX:48830065-48830384(-)$1	1	262	286	14.2946
((((((.((........)).))))	chr9:117063464-117063685(+)$1	1	79	103	14.4721
(((((((((........)))..))	chr16:572180-572439(+)$1	1	11	35	16.6909
((((.((((........)))).))	chr3:156865631-156865911(-)$1	1	96	120	14.7219
...((((((........)))))).	chr3:184908318-184908722(-)$1	1	48	72	14.8421
(((((((((........)))))..	chr6:90352757-90353042(-)$1	1	16	40	15.5052
(((((((((........)))))))	chr5:180662524-180662836(+)$1	1	108	132	16.1808
))(((.(((........))).)))	chr4:762542-762830(+)$1	1	62	86	16.5740
(((.(((((........))))).)	chr3:52435496-52435798(-)$1	1	175	199	14.5679
.(((.((((........)))))))	chr2:242708025-242708286(+)$1	1	236	260	14.3295
(((((((((........))))).)	chr2:223806772-223807032(+)$1	1	158	182	15.5201
(((((..((........))..)))	chr15:34672850-34673106(-)$1	1	35	59	15.4449
((....(((........)))....	chr2:192289686-192289977(+)$1	1	220	244	15.9507
..(((((((........)))))))	chr2:191799857-191800097(+)$1	1	27	51	15.3292
...((((((........)))))).	chr11:47260381-47260658(+)$1	1	81	105	15.4363
((.((((((........).)))))	chr11:43515700-43515969(+)$1	1	27	51	15.3165
).(((((((........)))))))	chr2:43449500-43449772(-)$1	1	168	192	15.4700
(..((((((........)))))).	chr17:25640403-25640649(+)$1	1	17	41	15.5271
.((((((.(........).)))))	chr22:38879361-38879617(-)$1	1	78	102	15.2629
((((...((........))...))	chr2:74652928-74653159(-)$1	1	47	71	14.6388
(.(((((((........)))))))	chr6:31605331-31605608(+)$1	1	175	199	16.3147
.(((..(((........)))..))	chr1:110292650-110292899(-)$1	1	47	71	16.8055
(.(((((((........)))))))	chr16:572066-572333(+)$1	1	97	121	16.5356
.((((((((........))).)))	chr15:34817807-34818074(-)$1	1	19	43	15.9247
.((((.(((........))).)))	chr11:77589683-77589936(-)$1	1	10	34	15.5578
(((((((((........)))))))	chr1:70716913-70717126(+)$1	1	157	181	16.1808
..((..(((........)))..))	chr3:184103819-184104045(+)$1	1	45	69	15.8231
(((.(((((........))))).)	chr6:134490429-134490718(-)$1	1	205	229	15.0380
(((((((((........)))))))	chr9:117074626-117074859(+)$1	1	186	210	16.5670
(((((((((........)).))))	chr6:159056205-159056458(+)$1	1	20	44	15.4500
((((..(((........)))..))	chr12:103232375-103232605(-)$1	1	109	133	16.1630
(.(((((((........)))))))	chr16:69733296-69733546(+)$1	1	160	184	16.4668
((((.((((........)))).))	chr7:45932705-45932963(+)$1	1	216	240	14.4726
(((.(((((........)))))))	chr19:1009560-1009808(-)$1	1	210	234	14.9448

#PSSM
d : 0.17	g : 0.12	" : 0.10	c : 0.10	e : 0.08	: : 0.07	f : 0.05	i : 0.05	! : 0.03	= : 0.03	h : 0.03	% : 0.03	b : 0.03	D : 0.01	# : 0.01	[ : 0.01	
d : 0.14	c : 0.14	g : 0.10	[ : 0.08	e : 0.08	f : 0.08	! : 0.05	: : 0.05	" : 0.05	i : 0.05	= : 0.03	h : 0.03	% : 0.03	# : 0.01	b : 0.01	
g : 0.21	c : 0.17	e : 0.10	d : 0.08	[ : 0.07	f : 0.07	! : 0.05	b : 0.05	i : 0.05	= : 0.03	" : 0.03	# : 0.03	h : 0.01	
g : 0.21	f : 0.17	c : 0.17	e : 0.08	b : 0.07	[ : 0.07	i : 0.05	d : 0.05	! : 0.03	" : 0.03	# : 0.01	= : 0.01	
g : 0.19	e : 0.19	f : 0.15	! : 0.08	c : 0.08	[ : 0.08	" : 0.05	i : 0.05	b : 0.03	# : 0.01	d : 0.01	= : 0.01	
g : 0.17	e : 0.17	f : 0.15	[ : 0.14	d : 0.12	! : 0.10	i : 0.05	" : 0.03	# : 0.01	= : 0.01	
c : 0.28	e : 0.15	g : 0.14	f : 0.14	d : 0.12	i : 0.05	[ : 0.03	! : 0.03	" : 0.01	= : 0.01	
c : 0.28	g : 0.14	e : 0.14	d : 0.12	b : 0.10	f : 0.10	[ : 0.05	i : 0.03	= : 0.01	
c : 0.28	g : 0.14	d : 0.12	e : 0.12	b : 0.10	f : 0.10	a : 0.07	i : 0.03	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.28	g : 0.14	d : 0.12	e : 0.12	b : 0.10	f : 0.10	a : 0.07	i : 0.03	= : 0.01	
c : 0.28	g : 0.14	d : 0.12	e : 0.12	b : 0.10	f : 0.10	] : 0.07	i : 0.03	= : 0.01	
c : 0.28	e : 0.15	g : 0.14	f : 0.14	d : 0.12	] : 0.05	2 : 0.03	i : 0.03	3 : 0.01	= : 0.01	
g : 0.15	f : 0.15	2 : 0.15	e : 0.15	d : 0.12	] : 0.10	i : 0.05	4 : 0.03	c : 0.01	3 : 0.01	= : 0.01	
g : 0.17	e : 0.17	f : 0.15	2 : 0.14	c : 0.10	] : 0.07	i : 0.05	3 : 0.03	4 : 0.03	b : 0.01	d : 0.01	= : 0.01	
g : 0.19	f : 0.17	c : 0.15	e : 0.10	b : 0.07	d : 0.07	i : 0.05	] : 0.05	3 : 0.03	2 : 0.03	4 : 0.03	= : 0.01	
g : 0.21	c : 0.14	e : 0.12	f : 0.08	b : 0.07	2 : 0.07	d : 0.07	i : 0.05	= : 0.03	3 : 0.03	] : 0.03	4 : 0.03	h : 0.01	7 : 0.01	

#score	882.1315868712676
#seq	57
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_CDS_m3_run1.txt

#BEAR
hbba!!ddddmmmmdddd]a]bb	chr1:17331094-17331390(-)$1	296	236	259	11.6655
cc[bb[ddddoooooodddd]bb	chr17:7415437-7415686(+)$1	249	197	220	9.5306
eeee!!ddddoooooodddd22e	chr12:9251879-9252101(-)$1	222	130	153	9.9707
ccc"""ddddnnnnndddd333c	chr4:74285221-74285426(+)$1	205	119	142	11.1491
GGGcccddddmmmmdddd333cc	chr12:1017089-1017302(+)$1	213	7	30	10.8041
e!!bb!!ddddllldddd]bb22	chr2:216288010-216288227(-)$1	217	129	152	9.6022
eeeee[ddddoooooodddd]ee	chr11:62302515-62302735(-)$1	220	113	136	9.6317
eee[bbddddmmmmdddd4444b	chr1:226027562-226027828(+)$1	266	98	121	11.8015
"ccc!!ddddmmmmdddd22ccc	chr1:12639220-12639471(-)$1	251	28	51	12.9715
eeee[eeeeemmmmeeeee]eee	chr1:64117279-64117490(+)$1	211	140	163	8.2766
ggeeeeeddddllldddd333ee	chr12:51384481-51384775(-)$1	294	250	273	10.3783
ggggggddddllldddd]ggggg	chr3:57561245-57561502(-)$1	257	92	115	9.8490
####dddd[ammmma]dddd333	chr9:124088688-124088928(+)$1	240	92	115	9.7658
dddd[eeeeemmmmeeeee]ddd	chr1:39914164-39914462(+)$1	298	193	216	7.8962
ccc[a!!cccmmmmccca]ccc]	chr9:6554649-6554882(-)$1	233	165	188	9.0217
!!ccc[ddddnnnnnddddccc]	chr1:44086117-44086351(+)$1	234	28	51	10.2277
eeeee[ddddoooooodddd]ee	chr6:119623052-119623264(-)$1	212	58	81	9.6317
dd!!dddd[ammmma]ddddddd	chr19:46357555-46357801(-)$1	246	57	80	8.8381
cceeeeeddddllldddd>>>>>	chr1:116941308-116941511(+)$1	203	30	53	9.1514
eeee[eeeeemmmmeeeeeeeee	chr15:99434456-99434689(+)$1	233	92	115	8.0397
eeee!!ddddmmmmdddd]eeee	chr6:90406073-90406358(-)$1	285	102	125	12.1059
f[a"""cccammmma]ccc333a	chrY:2713592-2713871(+)$1	279	191	214	9.5626
e[ccc[ddddmmmmdddd]ccc]	chr15:58891774-58892021(-)$1	247	39	62	12.6959
!ccc!!ddddmmmmdddd22ccc	chr1:35913714-35913991(-)$1	277	101	124	13.0283
bbddddddddnnnnndddd4444	chr7:100276216-100276440(+)$1	224	131	154	9.0278
::ccc[ddddllldddd]cccgg	chr5:140963590-140963877(-)$1	287	177	200	8.9954
bb[bb[ddddmmmmdddd]bb]b	chr16:74508362-74508628(-)$1	266	137	160	11.0861
ff[a!!ddddmmmmddddaffff	chr2:216261839-216262046(-)$1	207	154	177	12.0907
eee[a[ddddmmmmddddaeeee	chr3:133489312-133489516(+)$1	204	156	179	11.8271
ccc"""ddddmmmmdddd]ccc]	chr12:9232605-9232837(-)$1	232	131	154	12.9375
ffff!!ddddllldddd22ffff	chr7:103234110-103234349(-)$1	239	11	34	10.2248
bb[cccddddllldddd333ccc	chr11:62327122-62327363(-)$1	241	69	92	10.5842
dddd!!ddddllldddddddd88	chr2:170850837-170851066(+)$1	229	80	103	10.0750
d$$$$$ddddmmmmdddd4444d	chr8:38884172-38884426(+)$1	254	67	90	12.1617
ffffffddddmmmmdddd22fff	chr3:124738074-124738332(-)$1	258	41	64	10.9994
ccc!!eeeeemmmmeeeee22cc	chr2:216249486-216249695(-)$1	209	17	40	9.0960
dd[bb[ddddmmmmddddbb]dd	chr5:134223333-134223588(+)$1	255	9	32	10.9780
f$$$$$ddddmmmmddddfffff	chr2:85553587-85553849(-)$1	262	87	110	10.9287
cc####ddddmmmmdddd22ccc	chr1:24019064-24019276(+)$1	212	179	202	12.8277
cccbbddddnnnnndddd4444b	chr17:1303283-1303507(-)$1	224	104	127	9.3604
b[ccc[ddddllldddd]ccc]b	chr17:28749869-28750141(+)$1	272	214	237	10.6508
eee"""ddddmmmmdddd4444e	chr11:9457717-9457964(+)$1	247	36	59	13.2260
:ccc!!ddddmmmmdddd22ccc	chr3:98541023-98541306(-)$1	283	11	34	12.1180
f[ccc[ddddnnnnndddd]ccc	chr16:53498036-53498315(+)$1	279	229	252	10.2335
fffff[ddddllldddd]fffff	chr1:92185349-92185567(-)$1	218	141	164	9.6545
""ccc[ddddllldddd]ccc33	chr17:79813287-79813533(-)$1	246	38	61	11.1241
dddd!!ddddmmmmdddd]dddd	chr3:93597982-93598256(-)$1	274	117	140	11.7592
a[ccc[ddddmmmmddddccc]a	chr3:31663571-31663875(+)$1	304	58	81	12.3876
"ccc[eeeeemmmmeeeeeccc]	chr16:29810482-29810772(+)$1	290	124	147	8.8311
e!!bb[ddddmmmmdddd333bb	chr13:25067655-25067911(-)$1	256	168	191	12.6159

#otherMatches

#Seq PSSM
ggccucgguuucaugaucugugc	chr1:17331094-17331390(-)$1	296	236	259	11.6655
CAAUAUCCCCGGCCUGGGGGCUG	chr17:7415437-7415686(+)$1	249	197	220	9.5306
uguuuuagaucauaaaaucuuca	chr12:9251879-9252101(-)$1	222	130	153	9.9707
CUGCUUUGCCGAGGAGGUACUAC	chr4:74285221-74285426(+)$1	205	119	142	11.1491
AGGGCACAUUCACAGAUGACUUG	chr12:1017089-1017302(+)$1	213	7	30	10.8041
GAAGUUUGGGUUCUGCCCCAUGG	chr2:216288010-216288227(-)$1	217	129	152	9.6022
GCAGUCGGGUGAGGUGACCCAGC	chr11:62302515-62302735(-)$1	220	113	136	9.6317
UCAAGGAGAAGGUAUUCUACAGC	chr1:226027562-226027828(+)$1	266	98	121	11.8015
CAGGUGGGUGACAUCACCAUCCU	chr1:12639220-12639471(-)$1	251	28	51	12.9715
UUGUGGGGAAGCAGUUCUCAGCA	chr1:64117279-64117490(+)$1	211	140	163	8.2766
GGGUUCACUGACAUUCAGAAAUG	chr12:51384481-51384775(-)$1	294	250	273	10.3783
UUAUUUCCAGCUUCUGGUAGAUG	chr3:57561245-57561502(-)$1	257	92	115	9.8490
CCCUGCCAGAGCCGUGUGGUCCA	chr9:124088688-124088928(+)$1	240	92	115	9.7658
AGAUAGUCAGAAACUUGACAAUU	chr1:39914164-39914462(+)$1	298	193	216	7.8962
UCUGCAUUCCCCACGGAGGAGGU	chr9:6554649-6554882(-)$1	233	165	188	9.0217
CCAGCAGAGCGCUCUGCUCGCUA	chr1:44086117-44086351(+)$1	234	28	51	10.2277
CAUGAAUUUGAAGAAGCAAAAUC	chr6:119623052-119623264(-)$1	212	58	81	9.6317
GGCAGUGGAGACAGCGUCACCCG	chr19:46357555-46357801(-)$1	246	57	80	8.8381
GUGUCCAAGCAAGCUGCUGACAU	chr1:116941308-116941511(+)$1	203	30	53	9.1514
CACAGUGUGCCCAAGCACGUGUG	chr15:99434456-99434689(+)$1	233	92	115	8.0397
GCUGCUUUGAAGUCUUAACCAGC	chr6:90406073-90406358(-)$1	285	102	125	12.1059
GGUAUGUUGCACAAGUCAAGUGA	chrY:2713592-2713871(+)$1	279	191	214	9.5626
AUACUCUAAAAUAUUUUGUAGUU	chr15:58891774-58892021(-)$1	247	39	62	12.6959
CGUCAGUCAGCUAACUGAGAGGC	chr1:35913714-35913991(-)$1	277	101	124	13.0283
GCUGCCUCGGGGUCACCGACGAU	chr7:100276216-100276440(+)$1	224	131	154	9.0278
CUCCAAGGCUGUGAGUCCUGGGA	chr5:140963590-140963877(-)$1	287	177	200	8.9954
GUGGAGUGUAGAGAUAUAGUUGG	chr16:74508362-74508628(-)$1	266	137	160	11.0861
UCACAGUCUCCUGGGAGAGGAGC	chr2:216261839-216262046(-)$1	207	154	177	12.0907
UAUUCACUUGUAUUCAGGGAUGC	chr3:133489312-133489516(+)$1	204	156	179	11.8271
UUCUGUCUCAGUUUUGGGUGAGU	chr12:9232605-9232837(-)$1	232	131	154	12.9375
UUCUAUUAGAACUUUUAUGAGAA	chr7:103234110-103234349(-)$1	239	11	34	10.2248
CAGGUGGACUACGAGUCAUACAC	chr11:62327122-62327363(-)$1	241	69	92	10.5842
AGCCGUUCAUGAUGUGAGGCUUU	chr2:170850837-170851066(+)$1	229	80	103	10.0750
UGAAUUGGGUCAUAAUCUUGGAA	chr8:38884172-38884426(+)$1	254	67	90	12.1617
AUGUGACAGGAAGCUCUGCUUCA	chr3:124738074-124738332(-)$1	258	41	64	10.9994
UGGAAGUUGUUGCUGCGACCCCC	chr2:216249486-216249695(-)$1	209	17	40	9.0960
UUUGAAGUCAAAUAUGACUCUGA	chr5:134223333-134223588(+)$1	255	9	32	10.9780
AGCGAGAAGGAUGACCUUUAUCC	chr2:85553587-85553849(-)$1	262	87	110	10.9287
CCAAAGGUGAGUAGUCACAAGGA	chr1:24019064-24019276(+)$1	212	179	202	12.8277
UGGAUGAUCGAGAGGAUCUGGUG	chr17:1303283-1303507(-)$1	224	104	127	9.3604
AAAGCCAUGUUCAAUAUUGCUAU	chr17:28749869-28750141(+)$1	272	214	237	10.6508
CUUGAUUUAGAUACCUGAUUUAA	chr11:9457717-9457964(+)$1	247	36	59	13.2260
GAUUAACUGAUUUCUCAGGAAGU	chr3:98541023-98541306(-)$1	283	11	34	12.1180
UUUUUAUAAGGUAUUUUUAAAAA	chr16:53498036-53498315(+)$1	279	229	252	10.2335
GGAAGAGAGGCUACCUCCUUUCC	chr1:92185349-92185567(-)$1	218	141	164	9.6545
UUGAGAGUAGAACCUACAUUUGU	chr17:79813287-79813533(-)$1	246	38	61	11.1241
GGGUUGGCAUGUAAAUGUGACCU	chr3:93597982-93598256(-)$1	274	117	140	11.7592
AUGGUGCGACUGAUGUUGACUUU	chr3:31663571-31663875(+)$1	304	58	81	12.3876
CCCCAUUUCGCCAGCGAGAGGGA	chr16:29810482-29810772(+)$1	290	124	147	8.8311
CCUCAACGAUGUAAGUUGGUGUG	chr13:25067655-25067911(-)$1	256	168	191	12.6159

#DB
((((..((((....)))).).))	chr1:17331094-17331390(-)$1	1	236	259	11.6655
((.((.((((......)))).))	chr17:7415437-7415686(+)$1	1	197	220	9.5306
((((..((((......))))..)	chr12:9251879-9252101(-)$1	1	130	153	9.9707
(((...((((.....))))...)	chr4:74285221-74285426(+)$1	1	119	142	11.1491
((((((((((....))))...))	chr12:1017089-1017302(+)$1	1	7	30	10.8041
(..((..((((...)))).))..	chr2:216288010-216288227(-)$1	1	129	152	9.6022
(((((.((((......)))).))	chr11:62302515-62302735(-)$1	1	113	136	9.6317
(((.((((((....))))....)	chr1:226027562-226027828(+)$1	1	98	121	11.8015
.(((..((((....))))..)))	chr1:12639220-12639471(-)$1	1	28	51	12.9715
((((.(((((....))))).)))	chr1:64117279-64117490(+)$1	1	140	163	8.2766
))(((((((((...))))...))	chr12:51384481-51384775(-)$1	1	250	273	10.3783
((((((((((...)))).)))))	chr3:57561245-57561502(-)$1	1	92	115	9.8490
....((((.(....).))))...	chr9:124088688-124088928(+)$1	1	92	115	9.7658
((((.(((((....))))).)))	chr1:39914164-39914462(+)$1	1	193	216	7.8962
(((.(..(((....)))).))).	chr9:6554649-6554882(-)$1	1	165	188	9.0217
..(((.((((.....))))))).	chr1:44086117-44086351(+)$1	1	28	51	10.2277
(((((.((((......)))).))	chr6:119623052-119623264(-)$1	1	58	81	9.6317
((..((((.(....).)))))))	chr19:46357555-46357801(-)$1	1	57	80	8.8381
(((((((((((...)))).....	chr1:116941308-116941511(+)$1	1	30	53	9.1514
((((.(((((....)))))))))	chr15:99434456-99434689(+)$1	1	92	115	8.0397
((((..((((....)))).))))	chr6:90406073-90406358(-)$1	1	102	125	12.1059
(.(...((((....).)))...)	chrY:2713592-2713871(+)$1	1	191	214	9.5626
(.(((.((((....)))).))).	chr15:58891774-58892021(-)$1	1	39	62	12.6959
.(((..((((....))))..)))	chr1:35913714-35913991(-)$1	1	101	124	13.0283
))((((((((.....))))....	chr7:100276216-100276440(+)$1	1	131	154	9.0278
..(((.((((...)))).)))((	chr5:140963590-140963877(-)$1	1	177	200	8.9954
((.((.((((....)))).)).)	chr16:74508362-74508628(-)$1	1	137	160	11.0861
((.(..((((....)))))))))	chr2:216261839-216262046(-)$1	1	154	177	12.0907
(((.(.((((....)))))))))	chr3:133489312-133489516(+)$1	1	156	179	11.8271
(((...((((....)))).))).	chr12:9232605-9232837(-)$1	1	131	154	12.9375
((((..((((...))))..))))	chr7:103234110-103234349(-)$1	1	11	34	10.2248
((.(((((((...))))...)))	chr11:62327122-62327363(-)$1	1	69	92	10.5842
((((..((((...))))))))..	chr2:170850837-170851066(+)$1	1	80	103	10.0750
(.....((((....))))....)	chr8:38884172-38884426(+)$1	1	67	90	12.1617
((((((((((....))))..)))	chr3:124738074-124738332(-)$1	1	41	64	10.9994
(((..(((((....)))))..))	chr2:216249486-216249695(-)$1	1	17	40	9.0960
((.((.((((....)))))).))	chr5:134223333-134223588(+)$1	1	9	32	10.9780
(.....((((....)))))))))	chr2:85553587-85553849(-)$1	1	87	110	10.9287
((....((((....))))..)))	chr1:24019064-24019276(+)$1	1	179	202	12.8277
(((((((((.....))))....)	chr17:1303283-1303507(-)$1	1	104	127	9.3604
(.(((.((((...)))).))).)	chr17:28749869-28750141(+)$1	1	214	237	10.6508
(((...((((....))))....)	chr11:9457717-9457964(+)$1	1	36	59	13.2260
.(((..((((....))))..)))	chr3:98541023-98541306(-)$1	1	11	34	12.1180
(.(((.((((.....)))).)))	chr16:53498036-53498315(+)$1	1	229	252	10.2335
(((((.((((...)))).)))))	chr1:92185349-92185567(-)$1	1	141	164	9.6545
..(((.((((...)))).)))..	chr17:79813287-79813533(-)$1	1	38	61	11.1241
((((..((((....)))).))))	chr3:93597982-93598256(-)$1	1	117	140	11.7592
(.(((.((((....))))))).)	chr3:31663571-31663875(+)$1	1	58	81	12.3876
.(((.(((((....)))))))).	chr16:29810482-29810772(+)$1	1	124	147	8.8311
(..((.((((....))))...))	chr13:25067655-25067911(-)$1	1	168	191	12.6159

#PSSM
e : 0.23	c : 0.16	f : 0.14	d : 0.12	b : 0.08	" : 0.06	g : 0.04	! : 0.04	: : 0.04	h : 0.02	G : 0.02	# : 0.02	a : 0.02	
c : 0.23	e : 0.18	d : 0.10	[ : 0.10	b : 0.08	f : 0.08	! : 0.06	g : 0.04	$ : 0.04	G : 0.02	# : 0.02	: : 0.02	" : 0.02	
c : 0.32	e : 0.21	[ : 0.10	d : 0.08	! : 0.06	f : 0.06	# : 0.04	$ : 0.04	b : 0.02	G : 0.02	g : 0.02	a : 0.02	
c : 0.25	e : 0.16	b : 0.12	" : 0.08	d : 0.08	[ : 0.06	f : 0.06	a : 0.04	# : 0.04	! : 0.04	$ : 0.04	g : 0.02	
! : 0.21	c : 0.18	b : 0.14	" : 0.08	e : 0.08	[ : 0.08	d : 0.06	a : 0.04	$ : 0.04	f : 0.04	g : 0.02	# : 0.02	
[ : 0.30	! : 0.23	e : 0.14	" : 0.08	d : 0.08	c : 0.04	$ : 0.04	b : 0.02	g : 0.02	f : 0.02	# : 0.02	
d : 0.80	e : 0.14	! : 0.04	c : 0.02	
d : 0.86	e : 0.10	c : 0.04	
d : 0.82	e : 0.10	[ : 0.04	c : 0.04	
d : 0.80	e : 0.10	a : 0.06	c : 0.02	n : 0.02	
m : 0.60	l : 0.16	n : 0.10	o : 0.08	d : 0.06	
m : 0.60	l : 0.21	n : 0.10	o : 0.08	
m : 0.60	l : 0.21	n : 0.10	o : 0.08	
m : 0.60	d : 0.16	n : 0.10	o : 0.08	l : 0.06	
d : 0.66	e : 0.10	o : 0.08	n : 0.08	a : 0.06	c : 0.02	
d : 0.74	e : 0.10	o : 0.08	] : 0.06	c : 0.02	
d : 0.86	e : 0.10	c : 0.04	
d : 0.72	e : 0.10	] : 0.10	a : 0.02	c : 0.02	2 : 0.02	3 : 0.02	
d : 0.21	] : 0.16	2 : 0.12	e : 0.10	c : 0.10	3 : 0.08	4 : 0.08	a : 0.04	f : 0.04	g : 0.02	> : 0.02	b : 0.02	
c : 0.18	d : 0.16	3 : 0.12	2 : 0.12	4 : 0.10	f : 0.08	b : 0.06	] : 0.06	e : 0.06	a : 0.02	g : 0.02	> : 0.02	
c : 0.30	3 : 0.12	] : 0.10	4 : 0.10	f : 0.10	e : 0.08	d : 0.08	2 : 0.04	b : 0.04	g : 0.02	> : 0.02	
c : 0.25	e : 0.14	4 : 0.10	f : 0.10	3 : 0.08	d : 0.08	b : 0.06	] : 0.06	2 : 0.04	g : 0.04	> : 0.02	8 : 0.02	
e : 0.18	c : 0.18	b : 0.14	d : 0.10	] : 0.10	f : 0.10	g : 0.04	3 : 0.04	a : 0.04	2 : 0.02	> : 0.02	4 : 0.02	8 : 0.02	

#score	531.39948653034
#seq	50
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_CDS_m2_run2.txt

#BEAR
ddd!!ddddoooooodddddddd:	chr15:64421983-64422279(+)$1	296	201	225	10.3020
ggg!!ddddnnnnndddd22gggg	chr8:128752510-128752745(+)$1	235	64	88	13.2377
ccc[eeeeeooooooeeeeeccc]	chr9:35740408-35740653(-)$1	245	59	83	9.4771
f"""eeeeennnnneeeeefffff	chr17:37900221-37900444(+)$1	223	170	194	10.7729
eeee[ddddnnnnnddddeeeee:	chr11:124500194-124500495(+)$1	301	249	273	11.7299
eeee[ddddnnnnndddd]eeeee	chr19:2807705-2807971(+)$1	266	118	142	12.9046
cc####cccooooooccc4444cc	chr12:111993583-111993837(-)$1	254	198	222	9.6135
!ccc[ddddnnnnndddd]ccc]c	chr11:27393102-27393393(-)$1	291	216	240	12.6044
!!bbddddoooooodddd]bb]ee	chr19:2808160-2808410(+)$1	250	97	121	9.9073
ccc!!ddddmmmmdddd4444ccc	chr6:167347460-167347697(-)$1	237	50	74	9.9845
ddd[cccddddllldddd]ccc44	chr22:29694751-29695032(+)$1	281	53	77	8.7874
cccceeeeennnnneeeeea[ddd	chr16:56970489-56970761(+)$1	272	133	157	10.3824
ddd!!ddddnnnnndddd333ddd	chr1:32657775-32658040(+)$1	265	77	101	14.0333
iii[eeeeennnnneeeee]iiii	chr8:37595284-37595707(+)$1	423	9	33	11.1364
d[cccddddoooooodddd]ccc]	chr20:36029918-36030156(+)$1	238	140	164	10.8695
ddd!!ddddnnnnndddd22dddd	chr3:120366599-120366880(-)$1	281	55	79	13.5058
[ccc[ddddlllddddccc]dddd	chr9:124522122-124522391(+)$1	269	173	197	9.1368
ddd[eeeeennnnneeeeedddd:	chr17:73228977-73229260(+)$1	283	248	272	9.9765
eeee[ddddnnnnndddd22eeee	chr7:100414846-100415101(-)$1	255	147	171	13.1729
ddd[ddddoooooodddd22dddd	chr2:219267846-219268071(+)$1	225	179	203	11.2532
dd####ddddmmmmdddd333ddd	chr16:71956268-71956508(+)$1	240	2	26	9.9227
dddd[ddddlllddddddddeeee	chr8:134254153-134254472(-)$1	319	268	292	9.3246
dddcccddddmmmmdddd333ccc	chr13:114018075-114018333(-)$1	258	198	222	9.0479
ee"""ddddooooooddddeeeee	chr14:21862231-21862490(-)$1	259	9	33	11.6344
%%%%%ddddnnnnndddd4444ee	chr16:69689388-69689634(+)$1	246	167	191	10.8893
b[a[eeeeennnnneeeee]abb:	chr12:1016902-1017164(+)$1	262	217	241	9.7907
eeee[ddddnnnnndddd]eeeee	chr11:61081778-61082018(-)$1	240	161	185	12.9046
eee!!ddddnnnnndddd666666	chr10:127515029-127515333(+)$1	304	157	181	10.8104
ddd!!ddddnnnnndddd22dddd	chr19:41268704-41268945(+)$1	241	143	167	13.5058
=========nnnnn==========	chr16:89592682-89592987(+)$1	305	242	266	9.6176
d[a!!ddddoooooodddd]a]dd	chr16:70602811-70603066(+)$1	255	9	33	11.9228
ffffddddoooooodddd]fffff	chr16:74685918-74686154(-)$1	236	166	190	9.7081
!!gggggggnnnnnggggggg]ee	chr20:33442234-33442462(-)$1	228	106	130	9.1023
eeeee[cccnnnnnccceeeeecc	chr16:46724893-46725145(+)$1	252	45	69	9.5522
eeeeddddoooooodddd]eeeee	chr19:5223153-5223396(-)$1	243	31	55	10.7833
fff[ddddooooooddddffffff	chr16:16218525-16218769(+)$1	244	194	218	9.8329
ffffeeeeennnnneeeee]ffff	chr15:28501253-28501556(-)$1	303	222	246	10.1427
$$$$ddddoooooodddd4444bb	chr7:150774834-150775097(-)$1	263	214	238	10.4348
fff"""cccnnnnnccc333ffff	chr1:113235446-113235719(+)$1	273	64	88	10.3398
[bb!!ddddnnnnndddd4444bb	chr7:5402307-5402568(-)$1	261	162	186	12.8403
c[a"""ddddllldddd]a]ccc]	chr2:153573675-153573956(-)$1	281	115	139	9.8052
ccc:eeeeennnnneeeeeeeeee	chr2:128180679-128180984(+)$1	305	187	211	9.9255
e####ddddmmmmdddd333eeee	chr9:130653165-130653454(-)$1	289	253	277	10.4615
ddd!!ddddmmmmdddd333dddd	chr16:46962670-46962951(+)$1	281	120	144	10.1115
f"""eeeeennnnneeeeefffff	chr11:93469179-93469436(-)$1	257	207	231	10.7729
[ccceeeeennnnneeeee]ccc]	chr16:83994448-83994762(+)$1	314	75	99	10.9603
b####ddddoooooodddd4444b	chr22:42276612-42276862(+)$1	250	201	225	11.3298
e####ddddoooooodddd]eeee	chr10:82271914-82272174(+)$1	260	15	39	12.0552
eeeeeeeeennnnneeeee333ee	chr2:233749841-233750099(-)$1	258	190	214	11.3470
eee!!eeeeellleeeee22eeee	chr20:62320268-62320513(+)$1	245	98	122	9.3119
eeebbddddoooooodddd]bb]e	chr16:72129935-72130177(+)$1	242	133	157	9.7181
ddd[eeeeennnnneeeee]dddd	chr13:20608244-20608524(+)$1	280	89	113	11.3798
eeeeeddddnnnnndddd]eeeee	chr21:40604287-40604531(-)$1	244	109	133	12.5903
""bb[ddddnnnnndddd]bb>>>	chr19:8386391-8386684(+)$1	293	22	46	11.1032
!!a[eeeeennnnneeeee]a22h	chr16:2301281-2301593(-)$1	312	71	95	10.8859
ddd!!cccnnnnnccc4444dddd	chr3:122821189-122821428(+)$1	239	66	90	9.2997
e####ddddmmmmdddd333eeee	chr2:86710942-86711243(+)$1	301	161	185	10.4615

#otherMatches

#Seq PSSM
AUGCCGUCAGCAAAAUGACCAUCA	chr15:64421983-64422279(+)$1	296	201	225	10.3020
UAAUCUGGUAAUUGAUUAUUUUAA	chr8:128752510-128752745(+)$1	235	64	88	13.2377
UUGACCCUGACAGCACGGGGCAGC	chr9:35740408-35740653(-)$1	245	59	83	9.4771
CUUUGGAAACGCUUUUUCUGCUUC	chr17:37900221-37900444(+)$1	223	170	194	10.7729
CUCUUGCUUUUAAUGGGUGGAGAU	chr11:124500194-124500495(+)$1	301	249	273	11.7299
GGGCGGGGGGCGCACCCCGGCCCU	chr19:2807705-2807971(+)$1	266	118	142	12.9046
AUGAUCUCUAACCACAGACCAAAU	chr12:111993583-111993837(-)$1	254	198	222	9.6135
UGUACACCUUCAACAGGUAUGCCU	chr11:27393102-27393393(-)$1	291	216	240	12.6044
ACGCGGCCUGCUUUGGCCUGCAGC	chr19:2808160-2808410(+)$1	250	97	121	9.9073
ACUUUUUUAAAUUUAAAUUUUAGU	chr6:167347460-167347697(-)$1	237	50	74	9.9845
AGGACCCCGGGGUUCCCGAGGGAA	chr22:29694751-29695032(+)$1	281	53	77	8.7874
GCUGGUUCUAAUCGGGGACAGUAU	chr16:56970489-56970761(+)$1	272	133	157	10.3824
GGCUACCCUGAGAAAGGGAGCGCC	chr1:32657775-32658040(+)$1	265	77	101	14.0333
CCUUGUGUUCACACGACACCAGGC	chr8:37595284-37595707(+)$1	423	9	33	11.1364
AGCUGGUGGACAUGGCUGCUCAGG	chr20:36029918-36030156(+)$1	238	140	164	10.8695
GUUAUGACGUAAUUUGUCUAGACA	chr3:120366599-120366880(-)$1	281	55	79	13.5058
AAGACGGACAAUGUUUUCUGGGGC	chr9:124522122-124522391(+)$1	269	173	197	9.1368
AUGCUCAGUGACCGACUGACAUUC	chr17:73228977-73229260(+)$1	283	248	272	9.9765
GGUUCCUGAAGACGUCAGAAAACC	chr7:100414846-100415101(-)$1	255	147	171	13.1729
CGUCUUCCACCGGGGGAACUACGU	chr2:219267846-219268071(+)$1	225	179	203	11.2532
cacuccaguaaacuugcuuuaugc	chr16:71956268-71956508(+)$1	240	2	26	9.9227
GUCCUGAGCCAGGUUUGGAUGAGC	chr8:134254153-134254472(-)$1	319	268	292	9.3246
CAGGGCGAUCAAAUGGUCCCGGCU	chr13:114018075-114018333(-)$1	258	198	222	9.0479
GCCAUGUGCCGCCAAGUAUGCCGC	chr14:21862231-21862490(-)$1	259	9	33	11.6344
CAACGACUCUGGACGAGUGAAACC	chr16:69689388-69689634(+)$1	246	167	191	10.8893
CACAAGUUGGUAGACAAUUGGGCC	chr12:1016902-1017164(+)$1	262	217	241	9.7907
UAGCAGCCAGGUGGUGGUGGCUGU	chr11:61081778-61082018(-)$1	240	161	185	12.9046
UCCCUAUCAGAUAAUGAUUAUGAC	chr10:127515029-127515333(+)$1	304	157	181	10.8104
AUGCCGGGCCAGCCGCCCUACAUG	chr19:41268704-41268945(+)$1	241	143	167	13.5058
UGUAAUCUGAGAAACAGAUUGCAA	chr16:89592682-89592987(+)$1	305	242	266	9.6176
CUCAGGCCUCUGUCUAGGCAGUGC	chr16:70602811-70603066(+)$1	255	9	33	11.9228
UGAGCAGGACCCAGCCUGACUUGC	chr16:74685918-74686154(-)$1	236	166	190	9.7081
GAGAGCAUGGAUGACAUGCUCAGG	chr20:33442234-33442462(-)$1	228	106	130	9.1023
GUGUGUCGGCCUCUCCGCACGCAC	chr16:46724893-46725145(+)$1	252	45	69	9.5522
UGCCUCUGGGCUGGCGGAUGGCGC	chr19:5223153-5223396(-)$1	243	31	55	10.7833
GGCACAGCCUCAGUGCUGGCUUGG	chr16:16218525-16218769(+)$1	244	194	218	9.8329
CAGUCGGCCGCCCAGGCCGUGCUG	chr15:28501253-28501556(-)$1	303	222	246	10.1427
CCCCGCCUCCCCACAGGCACCCCU	chr7:150774834-150775097(-)$1	263	214	238	10.4348
GGGACCCUGUGGACCAGAACCCCA	chr1:113235446-113235719(+)$1	273	64	88	10.3398
GCUGGCAGCCACAUGCUGAGGGAG	chr7:5402307-5402568(-)$1	261	162	186	12.8403
CGCAGGGUCCUGGGGACGGGGAGC	chr2:153573675-153573956(-)$1	281	115	139	9.8052
UGCUCGCUGGACAACGGCGGCUGC	chr2:128180679-128180984(+)$1	305	187	211	9.9255
CCACUGGCUACUCAGCUGAUGUGG	chr9:130653165-130653454(-)$1	289	253	277	10.4615
AGGCUGACACUGUUGUCUCUCCUG	chr16:46962670-46962951(+)$1	281	120	144	10.1115
GAAAUUCUGAAACCCAGAACUUUA	chr11:93469179-93469436(-)$1	257	207	231	10.7729
CUCUAGCCCCAAAUGGGUUCAGGC	chr16:83994448-83994762(+)$1	314	75	99	10.9603
UCUCCUGGAACGUGAUCCGCUACA	chr22:42276612-42276862(+)$1	250	201	225	11.3298
GACUGGGACCUCAACGUCUACUUC	chr10:82271914-82272174(+)$1	260	15	39	12.0552
GGCUGGCCUUGCUUAGGUCCUUGG	chr2:233749841-233750099(-)$1	258	190	214	11.3470
GGGGGGGGCUCCAGGCUCAGCCUC	chr20:62320268-62320513(+)$1	245	98	122	9.3119
AGUGAGGAUGCCUCGAUCCAUCGA	chr16:72129935-72130177(+)$1	242	133	157	9.7181
GCGUGUUUAUUUCUUAAGCUUGUC	chr13:20608244-20608524(+)$1	280	89	113	11.3798
UUUGCGGAGGAUGACUCCAGCAGA	chr21:40604287-40604531(-)$1	244	109	133	12.5903
CAUGGACACCAGCCGUGUGCAGCC	chr19:8386391-8386684(+)$1	293	22	46	11.1032
CGCGCGGGUGCGAAACCCGGGGUG	chr16:2301281-2301593(-)$1	312	71	95	10.8859
AGUGAUGCAGAGAGUAGAAAAUUG	chr3:122821189-122821428(+)$1	239	66	90	9.2997
AUUUAGCCAGUGAUGGUGUCUGGA	chr2:86710942-86711243(+)$1	301	161	185	10.4615

#DB
(((..((((......)))))))).	chr15:64421983-64422279(+)$1	1	201	225	10.3020
(((..((((.....))))..))))	chr8:128752510-128752745(+)$1	1	64	88	13.2377
(((.(((((......)))))))).	chr9:35740408-35740653(-)$1	1	59	83	9.4771
(...(((((.....))))))))))	chr17:37900221-37900444(+)$1	1	170	194	10.7729
((((.((((.....))))))))).	chr11:124500194-124500495(+)$1	1	249	273	11.7299
((((.((((.....)))).)))))	chr19:2807705-2807971(+)$1	1	118	142	12.9046
((....(((......)))....))	chr12:111993583-111993837(-)$1	1	198	222	9.6135
.(((.((((.....)))).))).)	chr11:27393102-27393393(-)$1	1	216	240	12.6044
..((((((......)))).)).))	chr19:2808160-2808410(+)$1	1	97	121	9.9073
(((..((((....))))....)))	chr6:167347460-167347697(-)$1	1	50	74	9.9845
(((.(((((((...)))).)))..	chr22:29694751-29695032(+)$1	1	53	77	8.7874
))))(((((.....)))))(.(((	chr16:56970489-56970761(+)$1	1	133	157	10.3824
(((..((((.....))))...)))	chr1:32657775-32658040(+)$1	1	77	101	14.0333
(((.(((((.....))))).))))	chr8:37595284-37595707(+)$1	1	9	33	11.1364
(.(((((((......)))).))).	chr20:36029918-36030156(+)$1	1	140	164	10.8695
(((..((((.....))))..))))	chr3:120366599-120366880(-)$1	1	55	79	13.5058
.(((.((((...))))))).))))	chr9:124522122-124522391(+)$1	1	173	197	9.1368
(((.(((((.....))))))))).	chr17:73228977-73229260(+)$1	1	248	272	9.9765
((((.((((.....))))..))))	chr7:100414846-100415101(-)$1	1	147	171	13.1729
(((.((((......))))..))))	chr2:219267846-219268071(+)$1	1	179	203	11.2532
((....((((....))))...)))	chr16:71956268-71956508(+)$1	1	2	26	9.9227
((((.((((...))))))))))))	chr8:134254153-134254472(-)$1	1	268	292	9.3246
((((((((((....))))...)))	chr13:114018075-114018333(-)$1	1	198	222	9.0479
((...((((......)))))))))	chr14:21862231-21862490(-)$1	1	9	33	11.6344
.....((((.....))))....))	chr16:69689388-69689634(+)$1	1	167	191	10.8893
(.(.(((((.....))))).))).	chr12:1016902-1017164(+)$1	1	217	241	9.7907
((((.((((.....)))).)))))	chr11:61081778-61082018(-)$1	1	161	185	12.9046
(((..((((.....))))......	chr10:127515029-127515333(+)$1	1	157	181	10.8104
(((..((((.....))))..))))	chr19:41268704-41268945(+)$1	1	143	167	13.5058
(((((((((.....))))))))))	chr16:89592682-89592987(+)$1	1	242	266	9.6176
(.(..((((......)))).).))	chr16:70602811-70603066(+)$1	1	9	33	11.9228
((((((((......)))).)))))	chr16:74685918-74686154(-)$1	1	166	190	9.7081
..(((((((.....))))))).))	chr20:33442234-33442462(-)$1	1	106	130	9.1023
(((((.(((.....))))))))))	chr16:46724893-46725145(+)$1	1	45	69	9.5522
((((((((......)))).)))))	chr19:5223153-5223396(-)$1	1	31	55	10.7833
(((.((((......))))))))))	chr16:16218525-16218769(+)$1	1	194	218	9.8329
(((((((((.....))))).))))	chr15:28501253-28501556(-)$1	1	222	246	10.1427
....((((......))))....))	chr7:150774834-150775097(-)$1	1	214	238	10.4348
(((...(((.....)))...))))	chr1:113235446-113235719(+)$1	1	64	88	10.3398
.((..((((.....))))....))	chr7:5402307-5402568(-)$1	1	162	186	12.8403
(.(...((((...)))).).))).	chr2:153573675-153573956(-)$1	1	115	139	9.8052
))).(((((.....)))))(((((	chr2:128180679-128180984(+)$1	1	187	211	9.9255
(....((((....))))...))))	chr9:130653165-130653454(-)$1	1	253	277	10.4615
(((..((((....))))...))))	chr16:46962670-46962951(+)$1	1	120	144	10.1115
(...(((((.....))))))))))	chr11:93469179-93469436(-)$1	1	207	231	10.7729
.((((((((.....))))).))).	chr16:83994448-83994762(+)$1	1	75	99	10.9603
(....((((......))))....)	chr22:42276612-42276862(+)$1	1	201	225	11.3298
(....((((......)))).))))	chr10:82271914-82272174(+)$1	1	15	39	12.0552
(((((((((.....)))))...))	chr2:233749841-233750099(-)$1	1	190	214	11.3470
(((..(((((...)))))..))))	chr20:62320268-62320513(+)$1	1	98	122	9.3119
(((((((((......)))).)).)	chr16:72129935-72130177(+)$1	1	133	157	9.7181
(((.(((((.....))))).))))	chr13:20608244-20608524(+)$1	1	89	113	11.3798
(((((((((.....)))).)))))	chr21:40604287-40604531(-)$1	1	109	133	12.5903
..((.((((.....)))).))...	chr19:8386391-8386684(+)$1	1	22	46	11.1032
..(.(((((.....))))).)..)	chr16:2301281-2301593(-)$1	1	71	95	10.8859
(((..(((.....)))....))))	chr3:122821189-122821428(+)$1	1	66	90	9.2997
(....((((....))))...))))	chr2:86710942-86711243(+)$1	1	161	185	10.4615

#PSSM
d : 0.26	e : 0.26	c : 0.10	f : 0.10	! : 0.07	[ : 0.05	b : 0.03	g : 0.01	i : 0.01	% : 0.01	= : 0.01	$ : 0.01	" : 0.01	
d : 0.22	e : 0.21	c : 0.14	[ : 0.07	f : 0.07	# : 0.07	" : 0.05	! : 0.05	g : 0.01	i : 0.01	% : 0.01	= : 0.01	$ : 0.01	b : 0.01	
d : 0.21	e : 0.19	c : 0.14	# : 0.10	a : 0.07	f : 0.07	" : 0.05	b : 0.05	g : 0.03	i : 0.01	% : 0.01	= : 0.01	$ : 0.01	
! : 0.21	[ : 0.15	e : 0.14	# : 0.10	c : 0.10	" : 0.08	b : 0.05	f : 0.03	d : 0.01	% : 0.01	= : 0.01	g : 0.01	$ : 0.01	: : 0.01	
e : 0.26	! : 0.21	[ : 0.14	# : 0.10	d : 0.10	c : 0.05	" : 0.05	% : 0.01	= : 0.01	g : 0.01	b : 0.01	
d : 0.57	e : 0.24	c : 0.05	# : 0.03	" : 0.03	= : 0.01	g : 0.01	[ : 0.01	
d : 0.63	e : 0.24	c : 0.08	= : 0.01	g : 0.01	
d : 0.64	e : 0.24	c : 0.07	= : 0.01	g : 0.01	
d : 0.54	e : 0.24	o : 0.10	c : 0.05	= : 0.01	g : 0.01	n : 0.01	
n : 0.54	o : 0.26	m : 0.07	d : 0.07	l : 0.03	e : 0.01	
n : 0.54	o : 0.26	m : 0.10	l : 0.07	d : 0.01	
n : 0.54	o : 0.26	m : 0.10	l : 0.08	
n : 0.54	o : 0.26	m : 0.10	l : 0.05	d : 0.03	
n : 0.52	o : 0.26	d : 0.12	m : 0.03	l : 0.01	e : 0.01	c : 0.01	
d : 0.52	e : 0.22	o : 0.15	c : 0.05	= : 0.01	g : 0.01	
d : 0.64	e : 0.24	c : 0.07	= : 0.01	g : 0.01	
d : 0.63	e : 0.24	c : 0.07	= : 0.01	g : 0.01	4 : 0.01	
d : 0.54	e : 0.26	3 : 0.07	c : 0.03	4 : 0.03	= : 0.01	g : 0.01	] : 0.01	
e : 0.26	] : 0.15	d : 0.14	3 : 0.12	2 : 0.10	4 : 0.10	c : 0.01	6 : 0.01	= : 0.01	g : 0.01	f : 0.01	a : 0.01	
] : 0.21	e : 0.15	3 : 0.14	4 : 0.12	2 : 0.10	f : 0.07	d : 0.05	c : 0.03	b : 0.03	a : 0.01	6 : 0.01	= : 0.01	g : 0.01	
e : 0.24	d : 0.15	c : 0.10	f : 0.10	4 : 0.10	3 : 0.07	b : 0.05	a : 0.05	g : 0.03	[ : 0.01	i : 0.01	6 : 0.01	= : 0.01	
e : 0.24	d : 0.21	c : 0.14	f : 0.10	4 : 0.08	] : 0.05	b : 0.03	g : 0.01	i : 0.01	6 : 0.01	= : 0.01	3 : 0.01	> : 0.01	2 : 0.01	
e : 0.29	d : 0.22	c : 0.14	f : 0.10	b : 0.05	] : 0.03	4 : 0.03	g : 0.01	i : 0.01	6 : 0.01	= : 0.01	> : 0.01	2 : 0.01	
e : 0.29	d : 0.19	f : 0.10	c : 0.08	: : 0.07	] : 0.07	b : 0.05	g : 0.01	4 : 0.01	i : 0.01	6 : 0.01	= : 0.01	> : 0.01	h : 0.01	

#score	616.4171473291631
#seq	57
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_CDS_m1_run1.txt

#BEAR
========"""a[cccqqqqqqqqccc]a333=====	chr9:139351867-139352123(-)$1	256	190	227	11.6725
c!!eeeee####eeeeellleeeee4444eeeeeccc	chr1:32843498-32843780(-)$1	282	158	195	14.2230
eee[dddd[gggggggooooooggggggg333dddde	chr1:27094337-27094596(+)$1	259	140	177	13.0414
bb!!ccc[bb[ddddaooooooa]dddd]bb]ccc22	chr17:17942221-17942556(-)$1	335	129	166	13.2503
eee[cccccc!!cccrrrrrrrrrccc22ccc22ccc	chrX:53617330-53617572(-)$1	242	179	216	11.7380
fffff[a!!dddd[cccooooooccc333dddd4444	chr6:135314887-135315135(-)$1	248	189	226	12.9315
hhheeeee[ccceeeeennnnneeeee]ccc]eeeee	chr2:97530927-97531155(-)$1	228	72	109	12.8512
eeee[eeeee!!ddddoooooodddd22eeeee]eee	chr8:30567276-30567504(-)$1	228	179	216	14.5767
ccc[ccc!!eeeeeqqqqqqqqeeeee22cccccc22	chr4:88258369-88258630(-)$1	261	165	202	10.9133
D:eeeeeccc[eeeeeooooooeeeeeccc22eeeee	chr19:10227726-10227970(-)$1	244	94	131	12.9956
f"""eeeee"""ddddnnnnndddd333eeeeeffff	chr17:37814591-37814836(+)$1	245	142	179	12.4726
ggggg"""bba[ddddoooooodddd]a4444bb333	chr16:29815294-29815531(+)$1	237	26	63	14.9525
eccc[eeeee!!ccc[arrrrrrrrra]ccceeeee]	chr16:103946-104256(+)$1	310	34	71	11.2570
[ggggggg"""eeeeeooooooeeeee22ggggggg]	chr7:140080042-140080315(-)$1	273	37	74	16.6605
]ccceeeee!!eeeeeooooooeeeee]eeeee::::	chr17:8492300-8492517(-)$1	217	101	138	11.1121
eeeeeee!!eeeeeqqqqqqqqeeeee22eeeee333	chr11:3741928-3742165(-)$1	237	175	212	11.1471
ddd[a[gggggggddddllldddd4444ggggggga]	chr19:46333329-46333576(-)$1	247	174	211	11.4172
ee!!dddd####eeeeellleeeee4444dddd22ee	chr3:50326226-50326478(-)$1	252	182	219	12.8713
"eeeee"""ccceeeeennnnneeeee]ccc]eeeee	chr12:56676636-56676901(-)$1	265	132	169	13.6839
####ccc[eeeee[bboooooobbeeeee]ccc4444	chr17:45258860-45259117(-)$1	257	119	156	12.0495
hha[ccc[agggggggooooooggggggg4444a]cc	chr19:17283473-17283735(+)$1	262	151	188	12.9317
dddd"""ccc!!ddddoooooodddd22ccc22dddd	chr9:140469087-140469337(-)$1	250	8	45	14.5744
eeeeeccc"""eeeeeooooooeeeee]ccc:ggggg	chr3:41277857-41278082(+)$1	225	90	127	15.3729
"""dddd!!eeeeerrrrrrrrreeeee4444ddddd	chr1:160206890-160207112(-)$1	222	35	72	11.6736
fccc[bb!!bb!!ddddoooooodddd22bb22bb]c	chr11:72412667-72412950(-)$1	283	200	237	12.4685
dddd[bb[bb[eeeeeooooooeeeee]bbbbdddd:	chr5:175782595-175782905(-)$1	310	147	184	12.1247
iiccc[ccc!!ddddoooooodddd4444ccc]ccc]	chr9:86300797-86301044(-)$1	247	139	176	14.8337
=!!eeeee$$$$$cccooooooccc22eeeee22===	chr10:135212954-135213330(+)$1	376	204	241	13.3839
"""dddd[bb!!eeeeennnnneeeee22bb]dddd3	chr14:53127887-53128129(-)$1	242	122	159	13.4505
e:eeeeedddd!!cccooooooccc22dddd]eeeee	chr11:12883675-12884005(+)$1	330	280	317	11.8340
iiiiiiiii####ddddmmmmdddd4444iiiiiiii	chr14:105185014-105185268(+)$1	254	60	97	12.5054
"eeeeeccc[ccccccooooooccc]ccc333ccc22	chr7:75610256-75610580(+)$1	324	35	72	14.1416
eeeee!!bb####ddddnnnnndddd333bb22eeee	chr20:2448269-2448529(-)$1	260	200	237	13.3298
eeeeeee[ccc[eeeeennnnneeeee]ccceeeee2	chr12:50393375-50393624(-)$1	249	53	90	13.4948
ii[eeeee####ddddlllddddeeeee]iiiiiiii	chrX:49105132-49105393(+)$1	261	105	142	12.6889
gggg$$$$$ccceeeeennnnneeeee]cccgggggg	chr17:35981425-35981680(-)$1	255	45	82	12.0568
gggggggbbbb!!ddddnnnnndddd333bb]bb]gg	chr12:49495227-49495452(-)$1	225	132	169	11.8398
b!!ffffffa!!cccooooooccc22a22ffffff22	chr19:45559594-45559838(+)$1	244	127	164	11.9734
ccdddd####dddd[aooooooa]dddd22dddd22c	chr16:72130221-72130460(+)$1	239	133	170	12.6728
!eeeee!!bb!!eeeeemmmmeeeee333bb22eeee	chr22:22319556-22319798(-)$1	242	136	173	12.9359
ccc!!iiiiiiiii[ccclllccciiiiiiiiiccc]	chr17:79516088-79516343(-)$1	255	139	176	10.8851
gggggccc!!ccc[eeeeellleeeee22ccc]ccc6	chr22:35804433-35804723(+)$1	290	63	100	11.8193
fdddd####gggggggooooooggggggg333dddd4	chr9:4688410-4688761(+)$1	351	95	132	13.3233
::ggggggg"""eeeeellleeeee4444ggggggg:	chr5:90669516-90669807(-)$1	291	101	138	11.1489
ccceeeeeccc[ddddooooooddddccc]eeeee33	chr4:10082885-10083134(-)$1	249	160	197	14.6507
iffffff$$$$$ddddoooooodddd4444ffffffH	chrX:41196604-41196854(+)$1	250	181	218	13.4460
fffff===========oooooo===========]fff	chr2:86705038-86705286(+)$1	248	29	66	13.3517
hhhh!!ccc!!cccrrrrrrrrrccc333ccchhhhh	chr6:31655949-31656205(-)$1	256	116	153	11.2892
c[iiiiiiiiifffffflllffffff333iiiiiiii	chr19:18548401-18548662(-)$1	261	128	165	10.9082
ba[ccc[ccc####bboooooobb4444ccc]ccc33	chr19:47593313-47593549(-)$1	236	136	173	13.8726
I::eeeee"""eeeeeooooooeeeee4444eeeee:	chr17:80019739-80019964(-)$1	225	102	139	12.9469
[dddd[ccc"""ddddrrrrrrrrrddddcccdddd]	chr5:149212342-149212610(+)$1	268	46	83	11.6171
c"""dddd"""eeeeeqqqqqqqqeeeee333dddd]	chr1:1233368-1233642(-)$1	274	16	53	11.2269
$$$eeeee[cccddddoooooodddd]ccc333eeee	chr5:179228202-179228434(-)$1	232	25	62	14.4034

#otherMatches

#Seq PSSM
ACCUGUAUUCCCCGGUGUUGAUCAGCCAGCUUGUGCA	chr9:139351867-139352123(-)$1	256	190	227	11.6725
CAGCGGGCGGAACAGAGCAUCUCUGAAGAGCCCGGCU	chr1:32843498-32843780(-)$1	282	158	195	14.2230
UGGAUUGACUCAGGUGAGUGGGCGCCUGACACUUGAC	chr1:27094337-27094596(+)$1	259	140	177	13.0414
GGUUUCCGUACAGCCCGACCGUGCGGCUUUGGGGAUC	chr17:17942221-17942556(-)$1	335	129	166	13.2503
CCAAUGGAUCAAAGGGCAGAGUCACCUGAGGUAACUA	chrX:53617330-53617572(-)$1	242	179	216	11.7380
GCUCCAGGCCAUAAGGACUUCAUUCCAAAUAUGAUUA	chr6:135314887-135315135(-)$1	248	189	226	12.9315
GCCUAGCUGACCUCUGUCUCCCAUAGAUGGUGAGCUG	chr2:97530927-97531155(-)$1	228	72	109	12.8512
UGUCAACACUCAGAGGGUUCAGUUUCCAAGUGUAGAU	chr8:30567276-30567504(-)$1	228	179	216	14.5767
UUGAUGCAGUUAUUGGAUAUAAAAUGAAAGCGCAAUA	chr4:88258369-88258630(-)$1	261	165	202	10.9133
CCCUGAGCCCAGAACUGGAAGAAGUUCGGGAACUCAG	chr19:10227726-10227970(-)$1	244	94	131	12.9956
UUGACUUCAAAGUCCUACCCCAGGAAGCUGAAGAGGA	chr17:37814591-37814836(+)$1	245	142	179	12.4726
CAGGAGCAGGCAGCAUCCCCAAAUGCCGAGAUCCACA	chr16:29815294-29815531(+)$1	237	26	63	14.9525
UCCGAGGCCAUGGACGUGUUCCAGGAGGGUCUGGCUA	chr16:103946-104256(+)$1	310	34	71	11.2570
gaauaaaagaaaUGGGCCUAUACCUGUGAUUUUAUUG	chr7:140080042-140080315(-)$1	273	37	74	16.6605
CCAGUCAAUUCUUUGCACGUAAGUAAAUGUUGAAUGU	chr17:8492300-8492517(-)$1	217	101	138	11.1121
AAUGAAAAAGGAGAGUGCAUUGUCUCUGAUUUCACUA	chr11:3741928-3742165(-)$1	237	175	212	11.1471
UACCGAUGCCCAGGUGGAAGCCAUGAAGCUGGGCGCU	chr19:46333329-46333576(-)$1	247	174	211	11.4172
UACCGUGCCAAGGCUGAUCGUCGGCGCCAGCGCUCUA	chr3:50326226-50326478(-)$1	252	182	219	12.8713
CGUUUCCGAGGCUUUAGUAUCCCUGAAUGCCAGAAAC	chr12:56676636-56676901(-)$1	265	132	169	13.6839
UAUAUGGCAAGCACUAAACCACUAUGCUUACCGAGAU	chr17:45258860-45259117(-)$1	257	119	156	12.0495
GGCAGUGACAGCUCCUACGUGCGGGAGCUCAUCGGCA	chr19:17283473-17283735(+)$1	262	151	188	12.9317
CUUCCCUUUGAUGGAGUUUCUUCUUCUCCAGUAGAAG	chr9:140469087-140469337(-)$1	250	8	45	14.5744
GCUCCUCUGACAGAGUUACUUCACUCUAGGAAUGAAG	chr3:41277857-41278082(+)$1	225	90	127	15.3729
uagaugaccucuaauucuaauauuuagaaaccucaug	chr1:160206890-160207112(-)$1	222	35	72	11.6736
UCCUCUACAAGACUGCCUCUGCCGGCAAGCUGCUACA	chr11:72412667-72412950(-)$1	283	200	237	12.4685
UCUUAGCUCUUGAGGCUAGUGCGCCUCUAGGCAAGAU	chr5:175782595-175782905(-)$1	310	147	184	12.1247
AGAUGUACAGCUUUAAAAUUGUGGAUAAAUGUUCGUA	chr9:86300797-86301044(-)$1	247	139	176	14.8337
UACUGGCGCGUGUGGCUGAUGUGCUGAUGCCACCAUC	chr10:135212954-135213330(+)$1	376	204	241	13.3839
AGUAUAAUUUAUUAUAUAUUACAUAUAUGAAUUUGUU	chr14:53127887-53128129(-)$1	242	122	159	13.4505
CCCCAAUUUGAGUUCCCUGUAAGGACGUCAGUGUUGG	chr11:12883675-12884005(+)$1	330	280	317	11.8340
UGAUAUUGUACCCAGCAAAACUGCUCCUAAUAAUGUC	chr14:105185014-105185268(+)$1	254	60	97	12.5054
CGCCCUGCCCCCAUGGCCCCUCCCACUGGUCAGGUCG	chr7:75610256-75610580(+)$1	324	35	72	14.1416
UUCAUUGGCACCUUCAAGGCUUUUGACAAGCACAUGA	chr20:2448269-2448529(-)$1	260	200	237	13.3298
UGGAGGGUAAGUUAGAUUCUUUGUUUGUCUUUCCUCA	chr12:50393375-50393624(-)$1	249	53	90	13.4948
GGGAUGGUCCUGGGGCAGUGCCUGCUAUAUCCCUGCC	chrX:49105132-49105393(+)$1	261	105	142	12.6889
UCAAAUUAUGAAAUAAUGACCAAUUGUAUUCUUGAUU	chr17:35981425-35981680(-)$1	255	45	82	12.0568
CUCAUUGUGGCCAUCCACAUCCUGGAGCUGCUCAUCG	chr12:49495227-49495452(-)$1	225	132	169	11.8398
UGCCUGUACCAGAUCUACAUUGAUGAGUUGUACGGAG	chr19:45559594-45559838(+)$1	244	127	164	11.9734
CUGGCCAAAAUAUCCGGAAAGACAGGUAAAGGCCUUA	chr16:72130221-72130460(+)$1	239	133	170	12.6728
CUCUGGGUAUGUAGGGACAUUUCUCUCAAGUCACCAG	chr22:22319556-22319798(-)$1	242	136	173	12.9359
AGGCUGGCGCUGCCAUCCUUGGGAGGUAGCGUCCCUG	chr17:79516088-79516343(-)$1	255	139	176	10.8851
GCUGCCUGAUGCAGUCCCCCACGGGGAGAUGCCCAGA	chr22:35804433-35804723(+)$1	290	63	100	11.8193
UUCUUAGAGUUUUAUUAAUCAAGAUAAAAGAAAAGAC	chr9:4688410-4688761(+)$1	351	95	132	13.3233
UGACAUGCAUAAGAACAUGCUGUUCGAAUUGCGUGUA	chr5:90669516-90669807(-)$1	291	101	138	11.1489
ACCUGGCUUAGUGUUUGGGUGGGAGCCUGCAGCUGUG	chr4:10082885-10083134(-)$1	249	160	197	14.6507
UGUAAAAUUUAAGAAAUUUGCCUUUCAAUUUUUUACU	chrX:41196604-41196854(+)$1	250	181	218	13.4460
UUCAACCUGCACUGGGUGUGUCCUCGGUGUGGGUUUG	chr2:86705038-86705286(+)$1	248	29	66	13.3517
UCUGAAGAUACCAGGGUCCUGUACUGCUGAUCCGGAG	chr6:31655949-31656205(-)$1	256	116	153	11.2892
GCCCGGCAGGUGCCCCGGCUCGGGGUCAUGCUUGUCG	chr19:18548401-18548662(-)$1	261	128	165	10.9082
CCCCUGCCCAAGAAGGCAUACUCCAAGAUGGACAGCA	chr19:47593313-47593549(-)$1	236	136	173	13.8726
UAGUUGCUGACGGUGCACGGACGCACCAAGGAGCAGA	chr17:80019739-80019964(-)$1	225	102	139	12.9469
UGAGGACUGCCCGAGCCCCCAGCCAGCUCCAGCCUCU	chr5:149212342-149212610(+)$1	268	46	83	11.6171
CAGGGAGCAGAGAGCUGGACACGGGGCUUGGGGCUCA	chr1:1233368-1233642(-)$1	274	16	53	11.2269
CACUCUGCACUCGCUCAUCUCCGAGCUGAGCCCGCAG	chr5:179228202-179228434(-)$1	232	25	62	14.4034

#DB
((((((((...(.(((........))).)...)))))	chr9:139351867-139352123(-)$1	1	190	227	11.6725
(..(((((....(((((...)))))....))))))))	chr1:32843498-32843780(-)$1	1	158	195	14.2230
(((.((((.(((((((......)))))))...)))))	chr1:27094337-27094596(+)$1	1	140	177	13.0414
((..(((.((.(((((......).)))).)).)))..	chr17:17942221-17942556(-)$1	1	129	166	13.2503
(((.((((((..(((.........)))..)))..)))	chrX:53617330-53617572(-)$1	1	179	216	11.7380
(((((.(..((((.(((......)))...))))....	chr6:135314887-135315135(-)$1	1	189	226	12.9315
((((((((.((((((((.....))))).))).)))))	chr2:97530927-97531155(-)$1	1	72	109	12.8512
((((.(((((..((((......))))..))))).)))	chr8:30567276-30567504(-)$1	1	179	216	14.5767
(((.(((..(((((........)))))..))))))..	chr4:88258369-88258630(-)$1	1	165	202	10.9133
(.((((((((.(((((......))))))))..)))))	chr19:10227726-10227970(-)$1	1	94	131	12.9956
(...(((((...((((.....))))...)))))))))	chr17:37814591-37814836(+)$1	1	142	179	12.4726
(((((...(((.((((......)))).)....))...	chr16:29815294-29815531(+)$1	1	26	63	14.9525
((((.(((((..(((.(.........).)))))))).	chr16:103946-104256(+)$1	1	34	71	11.2570
.(((((((...(((((......)))))..))))))).	chr7:140080042-140080315(-)$1	1	37	74	16.6605
.)))(((((..(((((......))))).)))))....	chr17:8492300-8492517(-)$1	1	101	138	11.1121
(((((((..(((((........)))))..)))))...	chr11:3741928-3742165(-)$1	1	175	212	11.1471
(((.(.(((((((((((...))))....)))))))).	chr19:46333329-46333576(-)$1	1	174	211	11.4172
((..((((....(((((...)))))....))))..))	chr3:50326226-50326478(-)$1	1	182	219	12.8713
.(((((...((((((((.....))))).))).)))))	chr12:56676636-56676901(-)$1	1	132	169	13.6839
....(((.(((((.((......))))))).)))....	chr17:45258860-45259117(-)$1	1	119	156	12.0495
(((.(((.((((((((......)))))))....).))	chr19:17283473-17283735(+)$1	1	151	188	12.9317
((((...(((..((((......))))..)))..))))	chr9:140469087-140469337(-)$1	1	8	45	14.5744
)))))(((...(((((......))))).))).(((((	chr3:41277857-41278082(+)$1	1	90	127	15.3729
...((((..(((((.........)))))....)))))	chr1:160206890-160207112(-)$1	1	35	72	11.6736
)(((.((..((..((((......))))..))..)).)	chr11:72412667-72412950(-)$1	1	200	237	12.4685
((((.((.((.(((((......))))).)))))))).	chr5:175782595-175782905(-)$1	1	147	184	12.1247
(((((.(((..((((......))))....))).))).	chr9:86300797-86301044(-)$1	1	139	176	14.8337
(..(((((.....(((......)))..)))))..)))	chr10:135212954-135213330(+)$1	1	204	241	13.3839
...((((.((..(((((.....)))))..)).)))).	chr14:53127887-53128129(-)$1	1	122	159	13.4505
).(((((((((..(((......)))..)))).)))))	chr11:12883675-12884005(+)$1	1	280	317	11.8340
(((((((((....((((....))))....))))))))	chr14:105185014-105185268(+)$1	1	60	97	12.5054
.((((((((.((((((......))).)))...)))..	chr7:75610256-75610580(+)$1	1	35	72	14.1416
(((((..((....((((.....))))...))..))))	chr20:2448269-2448529(-)$1	1	200	237	13.3298
(((((((.(((.(((((.....))))).)))))))).	chr12:50393375-50393624(-)$1	1	53	90	13.4948
((.(((((....((((...))))))))).))))))))	chrX:49105132-49105393(+)$1	1	105	142	12.6889
((((.....((((((((.....))))).)))))))))	chr17:35981425-35981680(-)$1	1	45	82	12.0568
(((((((((((..((((.....))))...)).)).))	chr12:49495227-49495452(-)$1	1	132	169	11.8398
(..(((((((..(((......)))..)..))))))..	chr19:45559594-45559838(+)$1	1	127	164	11.9734
((((((....((((.(......).))))..))))..)	chr16:72130221-72130460(+)$1	1	133	170	12.6728
.(((((..((..(((((....)))))...))..))))	chr22:22319556-22319798(-)$1	1	136	173	12.9359
(((..(((((((((.(((...))))))))))))))).	chr17:79516088-79516343(-)$1	1	139	176	10.8851
((((((((..(((.(((((...)))))..))).))).	chr22:35804433-35804723(+)$1	1	63	100	11.8193
(((((....(((((((......)))))))...)))).	chr9:4688410-4688761(+)$1	1	95	132	13.3233
..(((((((...(((((...)))))....))))))).	chr5:90669516-90669807(-)$1	1	101	138	11.1489
(((((((((((.((((......))))))).)))))..	chr4:10082885-10083134(-)$1	1	160	197	14.6507
)((((((.....((((......))))....)))))))	chrX:41196604-41196854(+)$1	1	181	218	13.4460
((((((((((((((((......))))))))))).)))	chr2:86705038-86705286(+)$1	1	29	66	13.3517
((((..(((..(((.........)))...))))))))	chr6:31655949-31656205(-)$1	1	116	153	11.2892
(.(((((((((((((((...))))))...))))))))	chr19:18548401-18548662(-)$1	1	128	165	10.9082
((.(((.(((....((......))....))).)))..	chr19:47593313-47593549(-)$1	1	136	173	13.8726
)..(((((...(((((......)))))....))))).	chr17:80019739-80019964(-)$1	1	102	139	12.9469
.((((.(((...((((.........))))))))))).	chr5:149212342-149212610(+)$1	1	46	83	11.6171
(...((((...(((((........)))))...)))).	chr1:1233368-1233642(-)$1	1	16	53	11.2269
...(((((.(((((((......)))).)))...))))	chr5:179228202-179228434(-)$1	1	25	62	14.4034

#PSSM
e : 0.18	c : 0.12	f : 0.09	g : 0.07	" : 0.07	i : 0.07	b : 0.05	h : 0.05	d : 0.05	= : 0.03	[ : 0.03	D : 0.01	] : 0.01	# : 0.01	! : 0.01	: : 0.01	I : 0.01	$ : 0.01	
e : 0.20	c : 0.12	g : 0.09	d : 0.09	: : 0.07	" : 0.07	! : 0.05	f : 0.05	h : 0.05	i : 0.05	= : 0.01	b : 0.01	# : 0.01	[ : 0.01	a : 0.01	$ : 0.01	
e : 0.22	c : 0.12	g : 0.11	d : 0.11	! : 0.09	" : 0.07	f : 0.05	h : 0.03	i : 0.03	[ : 0.03	= : 0.01	# : 0.01	a : 0.01	: : 0.01	$ : 0.01	
e : 0.31	d : 0.12	g : 0.11	[ : 0.09	c : 0.09	f : 0.07	! : 0.05	" : 0.03	i : 0.03	= : 0.01	# : 0.01	h : 0.01	
e : 0.33	d : 0.14	c : 0.12	g : 0.09	f : 0.07	[ : 0.07	i : 0.03	! : 0.03	= : 0.01	a : 0.01	" : 0.01	$ : 0.01	
e : 0.33	c : 0.14	d : 0.11	[ : 0.07	g : 0.05	i : 0.05	= : 0.03	" : 0.03	b : 0.03	! : 0.03	f : 0.03	$ : 0.01	# : 0.01	
e : 0.27	c : 0.20	d : 0.09	g : 0.07	" : 0.05	i : 0.05	= : 0.03	b : 0.03	! : 0.03	f : 0.03	# : 0.03	a : 0.01	$ : 0.01	[ : 0.01	
e : 0.20	c : 0.18	[ : 0.11	! : 0.11	d : 0.07	g : 0.05	i : 0.05	= : 0.03	" : 0.03	b : 0.03	$ : 0.03	# : 0.03	f : 0.01	
c : 0.18	b : 0.12	" : 0.11	! : 0.11	# : 0.09	e : 0.09	[ : 0.05	$ : 0.05	i : 0.05	g : 0.03	a : 0.01	d : 0.01	f : 0.01	= : 0.01	
c : 0.18	" : 0.14	b : 0.12	# : 0.11	e : 0.11	g : 0.07	! : 0.07	d : 0.03	$ : 0.03	i : 0.03	[ : 0.01	a : 0.01	= : 0.01	
! : 0.18	" : 0.14	c : 0.14	# : 0.11	g : 0.07	e : 0.07	[ : 0.05	d : 0.05	b : 0.03	$ : 0.03	i : 0.03	a : 0.01	= : 0.01	
e : 0.20	! : 0.18	c : 0.12	# : 0.11	g : 0.07	d : 0.07	" : 0.05	[ : 0.05	$ : 0.03	a : 0.01	i : 0.01	= : 0.01	f : 0.01	
e : 0.37	d : 0.24	c : 0.11	g : 0.07	! : 0.05	# : 0.05	[ : 0.01	$ : 0.01	i : 0.01	= : 0.01	f : 0.01	
e : 0.35	d : 0.31	c : 0.14	g : 0.05	[ : 0.05	i : 0.01	= : 0.01	f : 0.01	# : 0.01	
e : 0.31	d : 0.29	c : 0.14	g : 0.05	q : 0.03	b : 0.03	r : 0.03	[ : 0.03	= : 0.01	f : 0.01	
e : 0.31	d : 0.25	c : 0.11	g : 0.05	r : 0.05	a : 0.03	q : 0.03	b : 0.03	o : 0.03	[ : 0.01	= : 0.01	f : 0.01	
o : 0.46	e : 0.18	d : 0.09	q : 0.07	r : 0.07	c : 0.03	n : 0.01	a : 0.01	l : 0.01	f : 0.01	
o : 0.49	n : 0.14	l : 0.11	r : 0.09	q : 0.07	m : 0.03	c : 0.01	e : 0.01	
o : 0.49	n : 0.14	l : 0.12	r : 0.09	q : 0.07	m : 0.03	e : 0.01	
o : 0.49	n : 0.14	l : 0.12	r : 0.09	q : 0.07	m : 0.03	d : 0.01	
o : 0.49	n : 0.14	r : 0.09	q : 0.07	e : 0.05	d : 0.03	m : 0.03	l : 0.03	f : 0.01	
o : 0.46	n : 0.12	r : 0.09	d : 0.09	q : 0.07	e : 0.07	c : 0.03	l : 0.01	f : 0.01	
e : 0.33	d : 0.24	r : 0.09	c : 0.09	g : 0.05	q : 0.03	a : 0.03	o : 0.03	b : 0.03	= : 0.01	f : 0.01	
e : 0.37	d : 0.24	c : 0.12	g : 0.05	r : 0.05	q : 0.03	] : 0.03	b : 0.03	= : 0.01	f : 0.01	
e : 0.40	d : 0.25	c : 0.12	g : 0.05	r : 0.03	4 : 0.03	2 : 0.01	i : 0.01	= : 0.01	f : 0.01	
e : 0.35	d : 0.22	4 : 0.12	c : 0.07	g : 0.05	2 : 0.05	3 : 0.01	r : 0.01	] : 0.01	i : 0.01	= : 0.01	f : 0.01	
e : 0.33	4 : 0.14	3 : 0.12	c : 0.07	d : 0.07	2 : 0.07	g : 0.05	] : 0.03	a : 0.03	i : 0.01	= : 0.01	
2 : 0.18	] : 0.16	4 : 0.16	3 : 0.12	e : 0.09	d : 0.07	c : 0.07	g : 0.05	a : 0.01	i : 0.01	= : 0.01	
c : 0.22	4 : 0.16	2 : 0.16	3 : 0.11	e : 0.11	g : 0.07	] : 0.03	d : 0.03	a : 0.01	b : 0.01	i : 0.01	= : 0.01	
c : 0.29	b : 0.12	e : 0.11	3 : 0.09	4 : 0.09	i : 0.07	d : 0.05	g : 0.05	] : 0.03	f : 0.01	2 : 0.01	= : 0.01	
c : 0.27	e : 0.12	b : 0.12	3 : 0.11	d : 0.07	4 : 0.07	i : 0.07	g : 0.05	f : 0.03	2 : 0.01	= : 0.01	
e : 0.18	] : 0.12	c : 0.12	3 : 0.11	2 : 0.09	g : 0.07	i : 0.07	d : 0.05	4 : 0.05	f : 0.03	: : 0.01	b : 0.01	= : 0.01	
e : 0.24	d : 0.18	2 : 0.11	c : 0.09	g : 0.09	i : 0.07	= : 0.03	b : 0.03	] : 0.03	f : 0.03	4 : 0.01	h : 0.01	3 : 0.01	
e : 0.24	d : 0.16	c : 0.12	g : 0.09	2 : 0.05	f : 0.05	b : 0.05	i : 0.05	4 : 0.03	] : 0.03	= : 0.01	: : 0.01	a : 0.01	h : 0.01	
e : 0.22	c : 0.16	d : 0.14	g : 0.09	f : 0.07	i : 0.05	= : 0.03	4 : 0.03	3 : 0.03	2 : 0.03	] : 0.03	: : 0.01	b : 0.01	h : 0.01	
e : 0.22	d : 0.14	c : 0.11	2 : 0.09	g : 0.09	3 : 0.07	f : 0.05	i : 0.05	= : 0.03	4 : 0.03	: : 0.01	a : 0.01	] : 0.01	h : 0.01	
e : 0.18	] : 0.12	c : 0.09	2 : 0.09	3 : 0.09	: : 0.07	4 : 0.05	g : 0.05	i : 0.05	= : 0.03	f : 0.03	d : 0.03	6 : 0.01	H : 0.01	h : 0.01	

#score	690.996335363452
#seq	54
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_transcript_m3_run1.txt

#BEAR
ee[ddddtttttttttttdddd]ee	chr16:24965782-24966076(-)$1	294	178	203	23.4326
eeeeccctttttttttttccc333e	chr12:49439609-49439850(-)$1	241	59	84	23.9651
cc[cccvvvvvvvvvvvvvccc]cc	chr16:52478039-52478315(-)$1	276	149	174	23.0770
eeeeewwwwwwwwwwwwwweeeee:	chr17:40370022-40370303(-)$1	281	228	253	19.6851
fff[bbuuuuuuuuuuuubb]ffff	chr7:100843327-100843622(-)$1	295	15	40	21.3081
hhhhhhhwwwwwwwwwwwwwwhhhh	chr15:89873379-89873613(-)$1	234	48	73	19.7590
cc[ddddtttttttttttdddd333	chr8:23003047-23003294(-)$1	247	202	227	23.7117
d!!ddddtttttttttttdddd]dd	chr11:76506539-76506824(+)$1	285	74	99	23.3100
e!!bb[atttttttttttabb22ee	chr19:15514390-15514634(-)$1	244	174	199	22.9165
c[cccwwwwwwwwwwwwwwccc]cc	chr9:134370979-134371301(+)$1	322	181	206	21.0857
c[bb[bbtttttttttttbb]bbcc	chr16:4882778-4883016(-)$1	238	100	125	22.2713
gggggggvvvvvvvvvvvvvggggg	chr10:6138919-6139171(+)$1	252	13	38	23.7266
!ddddbbtttttttttttbb]dddd	chr14:23944673-23944905(+)$1	232	113	138	22.4489
[fffffftttttttttttffffffc	chr10:94450064-94450312(+)$1	248	172	197	22.9575
eeeeeeettttttttttteeeee::	chr15:93535948-93536168(+)$1	220	96	121	21.5211
[fffffftttttttttttffffff2	chr20:42310372-42310595(+)$1	223	28	53	22.7989
hhhhhbbtttttttttttbb]hhhh	chr20:368839-369084(+)$1	245	18	43	22.0589
=======ttttttttttt=======	chr1:16958749-16958961(-)$1	212	76	101	24.7502
"""ddddvvvvvvvvvvvvvdddd]	chr11:72406341-72406578(-)$1	237	104	129	22.6149
ddddcccvvvvvvvvvvvvvccchh	chr16:87367760-87368013(-)$1	253	118	143	22.3991
hhhhhhhwwwwwwwwwwwwwwhhhh	chr3:197023183-197023480(-)$1	297	117	142	19.7590
ggggggguuuuuuuuuuuugggggg	chr20:57266516-57266743(+)$1	227	159	184	24.0953
d[cccbbvvvvvvvvvvvvvbb22c	chr17:27075600-27075845(+)$1	245	49	74	22.2080
cc!!cccvvvvvvvvvvvvvccc22	chr16:23652791-23653119(+)$1	328	13	38	23.0000
g!!ddddtttttttttttdddd22g	chr2:201724298-201724566(-)$1	268	95	120	23.6365
=======uuuuuuuuuuuu======	chr3:12966174-12966435(-)$1	261	5	30	24.4639
=======yyyyyyyyyyyyyyyy==	chr1:228288944-228289219(-)$1	275	176	201	21.4617
hhhhhhhttttttttttthhhhhhh	chr1:12638848-12639149(-)$1	301	236	261	21.5216
eeeeewwwwwwwwwwwwwweeeee:	chr2:74717234-74717552(+)$1	318	112	137	19.6851
=======ttttttttttt=======	chr16:1814008-1814259(+)$1	251	36	61	24.7502
gggggggwwwwwwwwwwwwwwgggg	chr20:17601259-17601470(-)$1	211	23	48	21.8509
"""ddddtttttttttttdddd333	chr22:42046752-42047016(+)$1	264	138	163	23.6811
!fffffftttttttttttffffff]	chr9:71831158-71831392(+)$1	234	164	189	23.0451
ggggggguuuuuuuuuuuugggggg	chr7:56123876-56124138(+)$1	262	141	166	24.0953
cccddddtttttttttttdddd22c	chr2:111416184-111416463(-)$1	279	248	273	23.1383
=======ttttttttttt=======	chr15:85196759-85197060(-)$1	301	266	291	24.7502
eeeeeeettttttttttteeeeeGG	chr5:118829368-118829649(+)$1	281	51	76	22.3913
:fffffftttttttttttffffffc	chr10:94454145-94454456(+)$1	311	184	209	21.7965
ggggggguuuuuuuuuuuugggggg	chr2:27726372-27726625(+)$1	253	205	230	24.0953
ee[ddddyyyyyyyyyyyyyyyydd	chr6:170060633-170060913(-)$1	280	8	33	20.3998
eeeeccctttttttttttccc:::f	chr16:30748376-30748626(+)$1	250	119	144	20.8641
eee[cccvvvvvvvvvvvvvcccee	chr3:183435322-183435593(+)$1	271	39	64	22.9918
#ffffffuuuuuuuuuuuuffffff	chr9:139733590-139733849(+)$1	259	45	70	22.5498
gggggggtttttttttttggggggg	chr19:50332098-50332380(+)$1	282	14	39	24.2819
ee[ddddtttttttttttdddd]ee	chr12:6494458-6494712(+)$1	254	147	172	23.4326
d!!ddddtttttttttttdddd333	chr3:101573388-101573632(+)$1	244	107	132	23.7579
=======ttttttttttt=======	chr1:16958683-16958930(-)$1	247	45	70	24.7502
dddd[bbuuuuuuuuuuuubb]ddd	chr16:75263771-75264048(-)$1	277	123	148	21.8681
ffffffvvvvvvvvvvvvvffffff	chrX:77378316-77378571(+)$1	255	35	60	21.8167
##eeeeettttttttttteeeee]f	chr11:65824206-65824434(+)$1	228	164	189	23.5089
=======uuuuuuuuuuuu======	chr9:116967952-116968174(+)$1	222	168	193	24.4639
!!eeeeevvvvvvvvvvvvveeeee	chr3:183962395-183962652(-)$1	257	189	214	23.1259
iiiiivvvvvvvvvvvvviiiiiii	chr11:27393102-27393393(-)$1	291	110	135	22.4671
gggggggtttttttttttggggggg	chr12:46754851-46755109(-)$1	258	39	64	24.2819
gggggggvvvvvvvvvvvvvggggg	chr11:46568715-46568954(-)$1	239	85	110	23.7266
GGeeeeettttttttttteeeee:b	chr9:107582243-107582495(-)$1	252	45	70	21.1310
cceeeeeuuuuuuuuuuuueeeee]	chr1:8925423-8925657(-)$1	234	8	33	23.2809
gggggggyyyyyyyyyyyyyyyygg	chr16:24560145-24560412(+)$1	267	191	216	21.3067
$$eeeeettttttttttteeeee55	chr17:73662495-73662754(-)$1	259	154	179	21.4698
ddbb[bbtttttttttttbb]bb]d	chr6:36568787-36569039(+)$1	252	87	112	21.8251
##eeeeeyyyyyyyyyyyyyyyyee	chr14:73577508-73577823(+)$1	315	165	190	20.6211

#otherMatches

#Seq PSSM
CACCAAGUCUCCAUGCCCCUUGUUG	chr16:24965782-24966076(-)$1	294	178	203	23.4326
GACAGGACCUCAGCCACCUCCGUUU	chr12:49439609-49439850(-)$1	241	59	84	23.9651
CAGGCUCCAAAAUAGUCACAGCGUG	chr16:52478039-52478315(-)$1	276	149	174	23.0770
UGCCCUUCUGGCCUCUUCUGGGCAU	chr17:40370022-40370303(-)$1	281	228	253	19.6851
ACCAGUAUCUCAUUGUCCGCAGGUG	chr7:100843327-100843622(-)$1	295	15	40	21.3081
UGUGGAGUGGAAGUUUAAUGUCUCC	chr15:89873379-89873613(-)$1	234	48	73	19.7590
CCCCUGGUCCAAGCGUCUCCAGCCU	chr8:23003047-23003294(-)$1	247	202	227	23.7117
UCUGGUGCAUUCAUUCCUCACCUGU	chr11:76506539-76506824(+)$1	285	74	99	23.3100
UGGCCACUUCACACUCUUGGGAAAU	chr19:15514390-15514634(-)$1	244	174	199	22.9165
GAGCCGUGAAGCUGCAGGAGGCCCC	chr9:134370979-134371301(+)$1	322	181	206	21.0857
UAGUGCCUGGAUCAAAGUGGAACAG	chr16:4882778-4883016(-)$1	238	100	125	22.2713
UUUCAUGAUACUUAUUUUAACAUGA	chr10:6138919-6139171(+)$1	252	13	38	23.7266
CUUGGACCAAAAGCUGAAGUAUCAA	chr14:23944673-23944905(+)$1	232	113	138	22.4489
ACGCGCGGGGACGGGAGGCGCGCGG	chr10:94450064-94450312(+)$1	248	172	197	22.9575
UGGGCACAGGGUCCUAAAGUGUCCC	chr15:93535948-93536168(+)$1	220	96	121	21.5211
CCCUGUCUUUCUGGUGUUGGCAGGA	chr20:42310372-42310595(+)$1	223	28	53	22.7989
UGGGCCCUAUGUCCUCCUGGAGCCC	chr20:368839-369084(+)$1	245	18	43	22.0589
GUUGCUCCCCCAACUCCAGAGUGAC	chr1:16958749-16958961(-)$1	212	76	101	24.7502
GUAUCUGGAAGAGAAGAAGGCAGAG	chr11:72406341-72406578(-)$1	237	104	129	22.6149
CAGGGCGACCCCAACAUCCCCGCUG	chr16:87367760-87368013(-)$1	253	118	143	22.3991
GCUUUUUCUUCUCAGAUACCCAGAG	chr3:197023183-197023480(-)$1	297	117	142	19.7590
GGGAGGUCAGUGGUGGAAAACCUCU	chr20:57266516-57266743(+)$1	227	159	184	24.0953
UCUGCCCAUUCAAAGACUCCGGCUG	chr17:27075600-27075845(+)$1	245	49	74	22.2080
UGAAAGACUGACCGACUGACUCUGA	chr16:23652791-23653119(+)$1	328	13	38	23.0000
AGAUGAAAUUGUUGAUACUUUAGGU	chr2:201724298-201724566(-)$1	268	95	120	23.6365
CCUGGGUUCUUGAGUUCCCACCCAG	chr3:12966174-12966435(-)$1	261	5	30	24.4639
AGAGGUAUGCCCUGGUCCAUAUCUG	chr1:228288944-228289219(-)$1	275	176	201	21.4617
GGCACUGUCUGCCAUCCCCGGUGCC	chr1:12638848-12639149(-)$1	301	236	261	21.5216
CUGUCUCUUUCUCCCUCCUGACAGA	chr2:74717234-74717552(+)$1	318	112	137	19.6851
CUGUCUCAGAUUUCUGGAGGGAUGG	chr16:1814008-1814259(+)$1	251	36	61	24.7502
CAUGCUCAGAGACCUGCAGAAGAGC	chr20:17601259-17601470(-)$1	211	23	48	21.8509
GAUUGGUAAGUAGCGUGGACCAUGG	chr22:42046752-42047016(+)$1	264	138	163	23.6811
AACGUCAAUUGUCAUUUCUGAUGUG	chr9:71831158-71831392(+)$1	234	164	189	23.0451
CAUUUUGGCCAUUAAAAAGCAAGAU	chr7:56123876-56124138(+)$1	262	141	166	24.0953
ACCGUGCACACAAAAGAAGCAUUAG	chr2:111416184-111416463(-)$1	279	248	273	23.1383
UAGAGGGACCCAACCCACUCUUCUG	chr15:85196759-85197060(-)$1	301	266	291	24.7502
UCCUUUCUCUUUAAAAAUGAAAGGG	chr5:118829368-118829649(+)$1	281	51	76	22.3913
AGAACUGGAAAGUUUGGACAGUUCC	chr10:94454145-94454456(+)$1	311	184	209	21.7965
AUAUCUUGUUUAAAUUCCUGAGGUA	chr2:27726372-27726625(+)$1	253	205	230	24.0953
AAUAAGAUUAUUGUGUAUUCUUUUC	chr6:170060633-170060913(-)$1	280	8	33	20.3998
CACCGGCGCAGUAAAAAGGCCAAAG	chr16:30748376-30748626(+)$1	250	119	144	20.8641
UUUUGUUGCUUGCUGACUUAAAUAA	chr3:183435322-183435593(+)$1	271	39	64	22.9918
CCAGAGGACCCUGACUGACCCUCUG	chr9:139733590-139733849(+)$1	259	45	70	22.5498
UUGCUUCUGAUUCCAUGUGAGGCGG	chr19:50332098-50332380(+)$1	282	14	39	24.2819
GGAGCAGGGAAUAUGGUACUGUGUC	chr12:6494458-6494712(+)$1	254	147	172	23.4326
ACAUGCUGGAUAUUAAAGAGCACAA	chr3:101573388-101573632(+)$1	244	107	132	23.7579
GUUGCUCCCCCAACUCCAGAGUGAC	chr1:16958683-16958930(-)$1	247	45	70	24.7502
CCAGCUGAAGCAGUUUGAACGACUG	chr16:75263771-75264048(-)$1	277	123	148	21.8681
UCCAGCUCAUCAAUAAUAUGCUGGA	chrX:77378316-77378571(+)$1	255	35	60	21.8167
UCGGCCCCCACAAGACAUGGGCCAG	chr11:65824206-65824434(+)$1	228	164	189	23.5089
UGGCCAUGGUGAUGUGAAGAUGGCC	chr9:116967952-116968174(+)$1	222	168	193	24.4639
UUACUGUUUCUUCUCCUCACACAGU	chr3:183962395-183962652(-)$1	257	189	214	23.1259
AAGGUUUUAAUUAAACAUGCUUUGU	chr11:27393102-27393393(-)$1	291	110	135	22.4671
ACAUUUCAAAAAAUAGAAGAAAUGU	chr12:46754851-46755109(-)$1	258	39	64	24.2819
AGUUCUACUCUUUGAUUUUCUAGGA	chr11:46568715-46568954(-)$1	239	85	110	23.7266
GAGAGAAAAAUAUGCCCAUUCUCAU	chr9:107582243-107582495(-)$1	252	45	70	21.1310
UGAACACCUGUUGAUCUUUGUGUUA	chr1:8925423-8925657(-)$1	234	8	33	23.2809
CAUUGCUUUUACCUUUAUAAUGUAG	chr16:24560145-24560412(+)$1	267	191	216	21.3067
AGCGGCGAGUCCGGAGUACGCUGAA	chr17:73662495-73662754(-)$1	259	154	179	21.4698
CACGCCAUAAAUACUAAUUGAUGAU	chr6:36568787-36569039(+)$1	252	87	112	21.8251
AAGCCUUGUCUGAAACCUACUCUGA	chr14:73577508-73577823(+)$1	315	165	190	20.6211

#DB
((.((((...........)))).))	chr16:24965782-24966076(-)$1	1	178	203	23.4326
(((((((...........)))...)	chr12:49439609-49439850(-)$1	1	59	84	23.9651
((.(((.............))).))	chr16:52478039-52478315(-)$1	1	149	174	23.0770
(((((..............))))).	chr17:40370022-40370303(-)$1	1	228	253	19.6851
(((.((............)).))))	chr7:100843327-100843622(-)$1	1	15	40	21.3081
(((((((..............))))	chr15:89873379-89873613(-)$1	1	48	73	19.7590
((.((((...........))))...	chr8:23003047-23003294(-)$1	1	202	227	23.7117
(..((((...........)))).))	chr11:76506539-76506824(+)$1	1	74	99	23.3100
(..((.(...........)))..))	chr19:15514390-15514634(-)$1	1	174	199	22.9165
(.(((..............))).))	chr9:134370979-134371301(+)$1	1	181	206	21.0857
(.((.((...........)).))))	chr16:4882778-4883016(-)$1	1	100	125	22.2713
(((((((.............)))))	chr10:6138919-6139171(+)$1	1	13	38	23.7266
.((((((...........)).))))	chr14:23944673-23944905(+)$1	1	113	138	22.4489
.((((((...........)))))))	chr10:94450064-94450312(+)$1	1	172	197	22.9575
))(((((...........)))))..	chr15:93535948-93536168(+)$1	1	96	121	21.5211
.((((((...........)))))).	chr20:42310372-42310595(+)$1	1	28	53	22.7989
(((((((...........)).))))	chr20:368839-369084(+)$1	1	18	43	22.0589
(((((((...........)))))))	chr1:16958749-16958961(-)$1	1	76	101	24.7502
...((((.............)))).	chr11:72406341-72406578(-)$1	1	104	129	22.6149
))))(((.............)))((	chr16:87367760-87368013(-)$1	1	118	143	22.3991
(((((((..............))))	chr3:197023183-197023480(-)$1	1	117	142	19.7590
(((((((............))))))	chr20:57266516-57266743(+)$1	1	159	184	24.0953
(.(((((.............))..)	chr17:27075600-27075845(+)$1	1	49	74	22.2080
((..(((.............)))..	chr16:23652791-23653119(+)$1	1	13	38	23.0000
(..((((...........))))..)	chr2:201724298-201724566(-)$1	1	95	120	23.6365
(((((((............))))))	chr3:12966174-12966435(-)$1	1	5	30	24.4639
(((((((................))	chr1:228288944-228289219(-)$1	1	176	201	21.4617
(((((((...........)))))))	chr1:12638848-12639149(-)$1	1	236	261	21.5216
(((((..............))))).	chr2:74717234-74717552(+)$1	1	112	137	19.6851
(((((((...........)))))))	chr16:1814008-1814259(+)$1	1	36	61	24.7502
(((((((..............))))	chr20:17601259-17601470(-)$1	1	23	48	21.8509
...((((...........))))...	chr22:42046752-42047016(+)$1	1	138	163	23.6811
.((((((...........)))))).	chr9:71831158-71831392(+)$1	1	164	189	23.0451
(((((((............))))))	chr7:56123876-56124138(+)$1	1	141	166	24.0953
(((((((...........))))..)	chr2:111416184-111416463(-)$1	1	248	273	23.1383
(((((((...........)))))))	chr15:85196759-85197060(-)$1	1	266	291	24.7502
))(((((...........)))))((	chr5:118829368-118829649(+)$1	1	51	76	22.3913
.((((((...........))))))(	chr10:94454145-94454456(+)$1	1	184	209	21.7965
(((((((............))))))	chr2:27726372-27726625(+)$1	1	205	230	24.0953
((.((((................))	chr6:170060633-170060913(-)$1	1	8	33	20.3998
))))(((...........)))...(	chr16:30748376-30748626(+)$1	1	119	144	20.8641
(((.(((.............)))))	chr3:183435322-183435593(+)$1	1	39	64	22.9918
.((((((............))))))	chr9:139733590-139733849(+)$1	1	45	70	22.5498
(((((((...........)))))))	chr19:50332098-50332380(+)$1	1	14	39	24.2819
((.((((...........)))).))	chr12:6494458-6494712(+)$1	1	147	172	23.4326
(..((((...........))))...	chr3:101573388-101573632(+)$1	1	107	132	23.7579
(((((((...........)))))))	chr1:16958683-16958930(-)$1	1	45	70	24.7502
((((.((............)).)))	chr16:75263771-75264048(-)$1	1	123	148	21.8681
((((((.............))))))	chrX:77378316-77378571(+)$1	1	35	60	21.8167
..(((((...........))))).)	chr11:65824206-65824434(+)$1	1	164	189	23.5089
(((((((............))))))	chr9:116967952-116968174(+)$1	1	168	193	24.4639
..(((((.............)))))	chr3:183962395-183962652(-)$1	1	189	214	23.1259
(((((.............)))))))	chr11:27393102-27393393(-)$1	1	110	135	22.4671
(((((((...........)))))))	chr12:46754851-46755109(-)$1	1	39	64	24.2819
(((((((.............)))))	chr11:46568715-46568954(-)$1	1	85	110	23.7266
(((((((...........))))).(	chr9:107582243-107582495(-)$1	1	45	70	21.1310
(((((((............))))).	chr1:8925423-8925657(-)$1	1	8	33	23.2809
(((((((................))	chr16:24560145-24560412(+)$1	1	191	216	21.3067
..(((((...........)))))..	chr17:73662495-73662754(-)$1	1	154	179	21.4698
((((.((...........)).)).)	chr6:36568787-36569039(+)$1	1	87	112	21.8251
..(((((................))	chr14:73577508-73577823(+)$1	1	165	190	20.6211

#PSSM
e : 0.18	g : 0.16	c : 0.11	= : 0.11	d : 0.09	h : 0.06	! : 0.04	# : 0.04	f : 0.03	[ : 0.03	" : 0.03	: : 0.01	i : 0.01	G : 0.01	$ : 0.01	
e : 0.16	g : 0.14	f : 0.11	= : 0.11	c : 0.08	! : 0.08	h : 0.06	d : 0.06	[ : 0.04	" : 0.03	# : 0.03	i : 0.01	G : 0.01	$ : 0.01	
e : 0.21	g : 0.14	f : 0.11	= : 0.11	[ : 0.08	! : 0.08	h : 0.06	c : 0.04	d : 0.04	b : 0.03	" : 0.03	i : 0.01	
d : 0.21	e : 0.19	g : 0.14	= : 0.11	f : 0.09	h : 0.06	c : 0.04	b : 0.04	[ : 0.03	! : 0.01	i : 0.01	
d : 0.18	e : 0.16	g : 0.14	c : 0.13	= : 0.11	f : 0.09	h : 0.06	[ : 0.04	b : 0.03	i : 0.01	
d : 0.16	g : 0.14	e : 0.13	b : 0.11	= : 0.11	c : 0.09	f : 0.09	w : 0.04	h : 0.04	[ : 0.01	v : 0.01	
d : 0.16	g : 0.14	e : 0.13	= : 0.11	b : 0.09	c : 0.08	f : 0.08	v : 0.04	w : 0.04	h : 0.04	u : 0.01	a : 0.01	
t : 0.50	v : 0.18	u : 0.14	w : 0.09	y : 0.06	
t : 0.50	v : 0.18	u : 0.14	w : 0.09	y : 0.06	
t : 0.50	v : 0.18	u : 0.14	w : 0.09	y : 0.06	
t : 0.50	v : 0.18	u : 0.14	w : 0.09	y : 0.06	
t : 0.50	v : 0.18	u : 0.14	w : 0.09	y : 0.06	
t : 0.50	v : 0.18	u : 0.14	w : 0.09	y : 0.06	
t : 0.50	v : 0.18	u : 0.14	w : 0.09	y : 0.06	
t : 0.50	v : 0.18	u : 0.14	w : 0.09	y : 0.06	
t : 0.50	v : 0.18	u : 0.14	w : 0.09	y : 0.06	
t : 0.50	v : 0.18	u : 0.14	w : 0.09	y : 0.06	
t : 0.50	v : 0.18	u : 0.14	w : 0.09	y : 0.06	
v : 0.16	d : 0.13	u : 0.13	w : 0.09	b : 0.08	e : 0.08	f : 0.06	= : 0.06	y : 0.06	c : 0.03	g : 0.03	a : 0.01	h : 0.01	i : 0.01	
d : 0.13	e : 0.13	v : 0.13	b : 0.11	f : 0.09	= : 0.09	g : 0.08	c : 0.06	y : 0.06	w : 0.04	h : 0.01	i : 0.01	
d : 0.14	e : 0.14	c : 0.11	g : 0.11	f : 0.09	= : 0.09	] : 0.08	y : 0.06	w : 0.04	b : 0.04	h : 0.01	i : 0.01	
d : 0.16	e : 0.14	g : 0.13	f : 0.11	= : 0.09	c : 0.08	h : 0.06	y : 0.06	b : 0.04	3 : 0.01	2 : 0.01	: : 0.01	] : 0.01	i : 0.01	
e : 0.14	g : 0.13	f : 0.11	= : 0.09	] : 0.08	3 : 0.06	h : 0.06	2 : 0.06	y : 0.06	d : 0.04	c : 0.04	b : 0.03	: : 0.01	i : 0.01	
e : 0.14	g : 0.14	f : 0.11	= : 0.11	h : 0.08	d : 0.08	3 : 0.06	2 : 0.06	c : 0.04	: : 0.04	] : 0.03	G : 0.01	i : 0.01	5 : 0.01	
g : 0.16	e : 0.11	c : 0.11	= : 0.11	f : 0.08	h : 0.08	d : 0.08	: : 0.04	3 : 0.04	] : 0.04	2 : 0.03	G : 0.01	i : 0.01	b : 0.01	5 : 0.01	

#score	1381.1487438218144
#seq	61
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_transcript_m1_run1.txt

#BEAR
[ggggggg[a[ddddbboooooobb22dddda]ggggggg	chr7:99691619-99691880(-)$1	261	203	243	14.8536
ffffccc[eeeeeddddoooooodddd]eeeee]ccc333	chr20:60934087-60934339(-)$1	252	97	137	14.1593
[iiiiiiiii[bb[cccammmma]ccc]bb]iiiiiiiii	chr7:5463135-5463417(-)$1	282	93	133	16.3401
======="""bb[ddddmmmmdddd]bb============	chr4:53242-53529(+)$1	287	209	249	15.0704
eeee[ccc[ccc!!cccooooooccc333cccccc]eeee	chr1:1477322-1477571(-)$1	249	80	120	17.1649
ddd!!iiiiiiiii[cccnnnnnccc]iiiiiiiii333d	chr9:130953609-130953870(-)$1	261	198	238	16.8695
hhhhhhh!!ccc!!cccoooooocccccc]hhhhhhhhcc	chr8:101963073-101963393(-)$1	320	252	292	15.7640
]ccciiiiiiiii[cccnnnnnccc4444iiiiiiiiicc	chr21:44527185-44527443(-)$1	258	144	184	16.9906
=====!!a[ccc[ddddccclllccc]ddddccc]a]===	chr22:19710145-19710400(+)$1	255	44	84	14.6572
===!!===========[ccclllccc===========22=	chr10:126107340-126107580(-)$1	240	158	198	18.4682
==========iiiiiiiiillliiiiiiiiibb[iiiiii	chr19:572962-573235(+)$1	273	54	94	17.2901
ggg[bb####ggggggg[allla]ggggggg22bb]gggg	chr1:228328784-228329047(+)$1	263	136	176	14.1920
============a[ccca!!dddd[a!!==========!!	chr9:139560209-139560450(+)$1	241	13	53	14.6501
ggggg"""ccc[abb!!ccclllcccbb]a]ccc22gggg	chr17:76124026-76124261(-)$1	235	42	82	14.0499
[=========="""ddddnnnnndddd333==========	chr1:245026454-245026706(-)$1	252	158	198	18.1428
ggggg"""eeeee[ddddnnnnndddd]eeeeeggggggg	chr22:20067927-20068172(+)$1	245	157	197	13.3529
###ccc"""ccc####aooooooa333ccc333ccceeee	chr11:46403747-46403995(+)$1	248	72	112	16.7877
[ccc[a[ccc[gggggggnnnnnggggggg]ccc333a]c	chr19:17355883-17356145(-)$1	262	185	225	14.5381
f===========[bbaqqqqqqqqa]bb===========]	chr19:1905448-1905736(+)$1	288	203	243	14.7374
[===========[a[a[ammmmaa]a]===========]e	chr9:140513628-140513987(+)$1	359	128	168	18.2154
cc[a!!=========="""dddd[iiiiiiiii[dddd[c	chr11:535074-535341(-)$1	267	48	88	12.9314
[bb[ccc!!ccc!!cccoooooocccccc]cccbbggggg	chr1:1256066-1256371(-)$1	305	44	84	17.2945
dd"""a!!============lll============22add	chr10:126847972-126848211(-)$1	239	50	90	17.0309
=================oooooo=================	chr19:34288071-34288344(+)$1	273	94	134	22.0719
fffff####ccc!!cccooooooccccccffffff]a22g	chr3:128208896-128209189(+)$1	293	135	175	16.4833
ee[bb!!ccc[bbddddoooooodddd]bb]ccc333bb]	chr11:85779844-85780142(-)$1	298	132	172	14.2917
ffff============[cccnnnnnccc============	chr17:76124219-76124509(-)$1	290	147	187	15.9470
fffff[a[eeeeeddddoooooodddd]eeeee]a]ffff	chr3:13035170-13035398(-)$1	228	160	200	13.7783
ffffiiiiiiiii!!bboooooobbiiiiiiiii]fffff	chr16:2059500-2059757(-)$1	257	63	103	17.7580
hhhhhh[ccc!!a[cccooooooccca22ccc]hhhhhhh	chr7:92077036-92077363(+)$1	327	240	280	15.6742
bbggggggg!!bb[cccoooooocccbb]ggggggg]bb]	chr10:105726970-105727225(+)$1	255	76	116	16.8579
d"""ggggggg[eeeeeooooooeeeee]gggggggdddd	chr1:1310379-1310642(-)$1	263	222	262	15.2318
c[eeeee[==========mmmm==========22eeeee]	chr17:76122949-76123200(-)$1	251	189	229	15.0489
hh[iiiiiiiii[ddddoooooodddd22iiiiiiiiihh	chr17:27188522-27188772(-)$1	250	158	198	18.1612
cc[dddd[bb"""acccooooooccc]a333bb]dddd]c	chr22:49980915-49981159(-)$1	244	26	66	15.8212
iiiii[ggggggg[cccpppppppccc]ggggggg]iiii	chr7:105028261-105028532(-)$1	271	13	53	13.6645
===========[a[cccooooooccc]a===========]	chr5:162864640-162864911(+)$1	271	223	263	22.0179
dd[ccc===========nnnnn===========22ccc33	chr13:92000741-92000950(+)$1	209	97	137	16.8662
[ggggggg"""ffffffooooooffffff333ggggggg3	chr19:17416602-17416875(+)$1	273	68	108	16.2682
ddd[ggggggg"""cccooooooccc]ggggggg]dddd]	chr17:79373631-79373885(+)$1	254	124	164	17.7374
fffff"""iiiiiiiiiooooooiiiiiiiii333fffff	chr5:176980296-176980547(-)$1	251	176	216	18.2374
cc]bb:ggggggg[cccooooooccc]ggggggg:ccc[c	chr15:66797029-66797282(-)$1	253	106	146	15.0894
a[==========!!cccqqqqqqqqccc]==========]	chr19:10406734-10406968(+)$1	234	59	99	16.4699
::eeeee============lll============]eeeee	chr13:92001093-92001367(+)$1	274	58	98	14.4721
ibb[iiiiiiiii"""cccmmmmccc333iiiiiiiii]b	chr1:54303814-54304175(-)$1	361	64	104	16.3193
ffffff[===========mmmm===========]ffffff	chr1:229693866-229694142(-)$1	276	3	43	15.6584
!!ccc"""dddd[bbbboooooobb]bb333ddddccc]=	chr3:154042020-154042283(-)$1	263	56	96	14.2232
cc[eeeee!!a[eeeeeooooooeeeee]a22eeeeeccc	chr1:2323186-2323473(+)$1	287	76	116	13.4535
d[dddd"""ccc[cccaooooooa]ccc]ccc22dddd22	chr16:600571-600842(+)$1	271	145	185	15.2864
========%%%%%%cccooooooccc22============	chr19:18548137-18548424(-)$1	287	102	142	16.9377
"""==========[cccooooooccc]==========333	chr17:30264100-30264365(+)$1	265	79	119	21.8622

#otherMatches

#Seq PSSM
GACAGUGCAGAUAGUGGUCCUCUCCGUGCUACCGCACUGU	chr7:99691619-99691880(-)$1	261	203	243	14.8536
GGACGCACGGGCCCCCUUCCGGUAGGGAGGCCCCUGCUUU	chr20:60934087-60934339(-)$1	252	97	137	14.1593
GGCUUUUCCGGGGGCUGCGGGAGCCGGGCCGCGGGAGGGC	chr7:5463135-5463417(-)$1	282	93	133	16.3401
CGGCGGGACCGAGUCUGCGAACGGAGUCCCCGCUGCCGCC	chr4:53242-53529(+)$1	287	209	249	15.0704
GGAGAAGAGUGGCCGCACCUUUCUGCACACCGUCUGCUUC	chr1:1477322-1477571(-)$1	249	80	120	17.1649
UGCGAGCUGGCUGUGUCUGCGGAGGAGGCGGCUGGCGGGG	chr9:130953609-130953870(-)$1	261	198	238	16.8695
GGCGGGUGAGCCUGAGCAUAGCCGCUGGUGGCCCGCUCGG	chr8:101963073-101963393(-)$1	320	252	292	15.7640
UUGGGGUCCGGACUGGCUGAUCGCCCGACGUCCGGGCCUC	chr21:44527185-44527443(-)$1	258	144	184	16.9906
CAGCUGGCCCUCUCUGACCUUGGGGGAUCAGGAGCGAAGU	chr22:19710145-19710400(+)$1	255	44	84	14.6572
GUCCUGGGGCUCUGGUUCGGGCCCUGGCCGGGGUUCCCUG	chr10:126107340-126107580(-)$1	240	158	198	18.4682
CUUGGUCAGGGGAGGUGGGCGUCUUGCUUUUCGGUCACCU	chr19:572962-573235(+)$1	273	54	94	17.2901
GCGCAGCAUCGUGAAGGGCUGGGGCCUUCACUCCUCUGUG	chr1:228328784-228329047(+)$1	263	136	176	14.1920
ggcucgggcggcaguggcggcggcgcgugcgcgccccggA	chr9:139560209-139560450(+)$1	241	13	53	14.6501
UCAGGAAUGGUGCGCCUGGAAACUCCGCUGGACUUGCCUG	chr17:76124026-76124261(-)$1	235	42	82	14.0499
AUGUCUCGGGGGGAGGGGAGAGGCCCCAGGUCCCGGGGCG	chr1:245026454-245026706(-)$1	252	158	198	18.1428
CGCCUccggggcuggggggcgggccccgggcccAGGCGUU	chr22:20067927-20068172(+)$1	245	157	197	13.3529
AACUCUGUUCCUCGCGCGUUGUAGAUAAGGUGAAGAAGGG	chr11:46403747-46403995(+)$1	248	72	112	16.7877
UACCCGCGCGCGGCCGAGGACGACUCGGCCUCGCCCCCCG	chr19:17355883-17356145(-)$1	262	185	225	14.5381
UGGCCUGGGGGAAGCCUCAGGACCGCGCUCCCCCGGGCCU	chr19:1905448-1905736(+)$1	288	203	243	14.7374
ggggcgcAGGUGAGGGAGGCGACCGCGUACCUGUgcccgc	chr9:140513628-140513987(+)$1	359	128	168	18.2154
gcggGUGGGUggggccgggcggggcccgcgggcACAGGUG	chr11:535074-535341(-)$1	267	48	88	12.9314
ACAGCUGGACCCUGGGCCUCAGAGCCGGGACAGUGGGGUG	chr1:1256066-1256371(-)$1	305	44	84	17.2945
GGAAAGGAGGCGAAGUGGAACCCUUUUGUUUUGCCGGCCC	chr10:126847972-126848211(-)$1	239	50	90	17.0309
ugugugugugugugugugugugugcgcgcgcgcgcgcgcg	chr19:34288071-34288344(+)$1	273	94	134	22.0719
GGCCACUGCGGUAGUGGAGGUGGCCAGCCUGGCUGAGUCC	chr3:128208896-128209189(+)$1	293	135	175	16.4833
CGGGUGACACGAGCCGGUUCUCUCUGGACUGGUGGCAGCG	chr11:85779844-85780142(-)$1	298	132	172	14.2917
CGGUGGCCCCAGAGUUGCAGCCGCUCUGGGCUCUGGGGCC	chr17:76124219-76124509(-)$1	290	147	187	15.9470
CUGCGGUGUCGCUCUCUGGGACUGGAGCGGUGAGGACGCA	chr3:13035170-13035398(-)$1	228	160	200	13.7783
GGCGGCAGCUCCUGAGCGGGAAGGCGGGAGCUGCGUGCUG	chr16:2059500-2059757(-)$1	257	63	103	17.7580
CGGGGGCGGCAAGCAGGUGAGCUCCUCCGGCCCCUCCCGC	chr7:92077036-92077363(+)$1	327	240	280	15.6742
CGAGGCGGGAGGGCUCGGCUUCUCGACUGCCCGCCUCCGA	chr10:105726970-105727225(+)$1	255	76	116	16.8579
UGAACCCGGGGAGGGGGCCGGCCUCCCCGUUCUGGGACCU	chr1:1310379-1310642(-)$1	263	222	262	15.2318
GGCUCUGUGCCCCUGUCUCAUCAGAUGGGGGCUCCGGAGG	chr17:76122949-76123200(-)$1	251	189	229	15.0489
UCAUAUACUGUAAGUUUGCGAUGAGACACUACAGUAUAGA	chr17:27188522-27188772(-)$1	250	158	198	18.1612
CUGGGCUGAGAGCCCUGGGAUGGCAGAGAAGcugggcugg	chr22:49980915-49981159(-)$1	244	26	66	15.8212
UUCAGCCCCGAGACCUGUGCGUUUCGGCUCUCGGGUUUGG	chr7:105028261-105028532(-)$1	271	13	53	13.6645
GGGGGCGCGGGGCGAGGAGUAGGUCUGGCCCGCGCCCUUU	chr5:162864640-162864911(+)$1	271	223	263	22.0179
CCCGCUCCGCGUGGGCUUUGUUAGCCCGCGUGGGCAGCCU	chr13:92000741-92000950(+)$1	209	97	137	16.8662
CGCAGCCGGUACUGCGGGACCCACUGCGGAUAUGGCUGUC	chr19:17416602-17416875(+)$1	273	68	108	16.2682
UCGAGAGCGGAACAGGGCGCCCACCCCUCCGCUCCCGGGA	chr17:79373631-79373885(+)$1	254	124	164	17.7374
UUUUGGCUGAGCCUGCCCAGGAAGGCAGGCUCCUGCAGGA	chr5:176980296-176980547(-)$1	251	176	216	18.2374
GUGGCAGCAGCCGGGCUGAGAGGAGCGUGGCUGUCUCCUC	chr15:66797029-66797282(-)$1	253	106	146	15.0894
CGGGUUUAUAUCCCCAUGGGCUGAAGUGCGAUAUAAAUCG	chr19:10406734-10406968(+)$1	234	59	99	16.4699
AGCCCCCGCCCCUCUGGGCCGGGCUCGGGGGGGCUGGGGG	chr13:92001093-92001367(+)$1	274	58	98	14.4721
GUUGAGCUUGUCCAGACGAAGCCUCGCAGGGAUGGGUUGG	chr1:54303814-54304175(-)$1	361	64	104	16.3193
GCGGCUCCUGGGGCUGUGGGCUCGCGGCCCCGGCAGCUGC	chr1:229693866-229694142(-)$1	276	3	43	15.6584
CGGGUUGUAGUCUGCCAGGACAAUGAGUUAUGACUACCAU	chr3:154042020-154042283(-)$1	263	56	96	14.2232
CGCGGAGGACGGAGCGGAAGUGCUCGCUGCAGCUUCCCGG	chr1:2323186-2323473(+)$1	287	76	116	13.4535
UGUCGGUGAGGGUCCCCGUCGGUGAGGGUCCCGGUCGGUG	chr16:600571-600842(+)$1	271	145	185	15.2864
GCGGGACCAGGGGGGCUGUAGGGGGUGGGGUUCCGCGGGG	chr19:18548137-18548424(-)$1	287	102	142	16.9377
GCUGGGGCGAGCGGUUGGUAUUGCAGGCGCUUGCUCUCCG	chr17:30264100-30264365(+)$1	265	79	119	21.8622

#DB
.(((((((.(.((((((......))..))))).)))))))	chr7:99691619-99691880(-)$1	1	203	243	14.8536
(((((((.(((((((((......)))).))))).)))...	chr20:60934087-60934339(-)$1	1	97	137	14.1593
.(((((((((.((.((((....).))).)).)))))))))	chr7:5463135-5463417(-)$1	1	93	133	16.3401
(((((((...((.((((....)))).))))))))))))))	chr4:53242-53529(+)$1	1	209	249	15.0704
((((.(((.(((..(((......)))...)))))).))))	chr1:1477322-1477571(-)$1	1	80	120	17.1649
(((..(((((((((.(((.....))).)))))))))...)	chr9:130953609-130953870(-)$1	1	198	238	16.8695
(((((((..(((..(((......)))))).))))))))))	chr8:101963073-101963393(-)$1	1	252	292	15.7640
.)))(((((((((.(((.....)))....)))))))))((	chr21:44527185-44527443(-)$1	1	144	184	16.9906
(((((..(.(((.(((((((...))).))))))).).)))	chr22:19710145-19710400(+)$1	1	44	84	14.6572
(((..(((((((((((.(((...))))))))))))))..)	chr10:126107340-126107580(-)$1	1	158	198	18.4682
))))))))))(((((((((...)))))))))((.((((((	chr19:572962-573235(+)$1	1	54	94	17.2901
(((.((....(((((((.(...).)))))))..)).))))	chr1:228328784-228329047(+)$1	1	136	176	14.1920
(((((((((((((.((((..((((.(..((((((((((..	chr9:139560209-139560450(+)$1	1	13	53	14.6501
(((((...(((.(((..(((...))))).).)))..))))	chr17:76124026-76124261(-)$1	1	42	82	14.0499
.((((((((((...((((.....))))...))))))))))	chr1:245026454-245026706(-)$1	1	158	198	18.1428
(((((...(((((.((((.....)))).))))))))))))	chr22:20067927-20068172(+)$1	1	157	197	13.3529
...(((...(((....(......)...)))...)))))))	chr11:46403747-46403995(+)$1	1	72	112	16.7877
.(((.(.(((.(((((((.....))))))).)))...).)	chr19:17355883-17356145(-)$1	1	185	225	14.5381
((((((((((((.(((........).))))))))))))).	chr19:1905448-1905736(+)$1	1	203	243	14.7374
.(((((((((((.(.(.(....)).).))))))))))).)	chr9:140513628-140513987(+)$1	1	128	168	18.2154
((.(..((((((((((...((((.(((((((((.((((.(	chr11:535074-535341(-)$1	1	48	88	12.9314
.((.(((..(((..(((......)))))).))))))))))	chr1:1256066-1256371(-)$1	1	44	84	17.2945
((...(..((((((((((((...))))))))))))..)))	chr10:126847972-126848211(-)$1	1	50	90	17.0309
(((((((((((((((((......)))))))))))))))))	chr19:34288071-34288344(+)$1	1	94	134	22.0719
(((((....(((..(((......)))))))))))).)..)	chr3:128208896-128209189(+)$1	1	135	175	16.4833
((.((..(((.((((((......)))).)).)))...)).	chr11:85779844-85780142(-)$1	1	132	172	14.2917
))))((((((((((((.(((.....)))))))))))))))	chr17:76124219-76124509(-)$1	1	147	187	15.9470
(((((.(.(((((((((......)))).))))).).))))	chr3:13035170-13035398(-)$1	1	160	200	13.7783
(((((((((((((..((......))))))))))).)))))	chr16:2059500-2059757(-)$1	1	63	103	17.7580
((((((.(((..(.(((......))))..))).)))))))	chr7:92077036-92077363(+)$1	1	240	280	15.6742
(((((((((..((.(((......))))).))))))).)).	chr10:105726970-105727225(+)$1	1	76	116	16.8579
(...(((((((.(((((......))))).)))))))))))	chr1:1310379-1310642(-)$1	1	222	262	15.2318
(.(((((.((((((((((....))))))))))..))))).	chr17:76122949-76123200(-)$1	1	189	229	15.0489
((.(((((((((.((((......))))..)))))))))))	chr17:27188522-27188772(-)$1	1	158	198	18.1612
((.((((.((...((((......))).)...)).)))).)	chr22:49980915-49981159(-)$1	1	26	66	15.8212
(((((.(((((((.(((.......))).))))))).))))	chr7:105028261-105028532(-)$1	1	13	53	13.6645
(((((((((((.(.(((......))).)))))))))))).	chr5:162864640-162864911(+)$1	1	223	263	22.0179
((.((((((((((((((.....)))))))))))..)))..	chr13:92000741-92000950(+)$1	1	97	137	16.8662
.(((((((...((((((......))))))...))))))).	chr19:17416602-17416875(+)$1	1	68	108	16.2682
(((.(((((((...(((......))).))))))).)))).	chr17:79373631-79373885(+)$1	1	124	164	17.7374
(((((...(((((((((......)))))))))...)))))	chr5:176980296-176980547(-)$1	1	176	216	18.2374
)).)).(((((((.(((......))).))))))).(((.(	chr15:66797029-66797282(-)$1	1	106	146	15.0894
(.((((((((((..(((........))).)))))))))).	chr19:10406734-10406968(+)$1	1	59	99	16.4699
..(((((((((((((((((...)))))))))))).)))))	chr13:92001093-92001367(+)$1	1	58	98	14.4721
(((.(((((((((...(((....)))...))))))))).)	chr1:54303814-54304175(-)$1	1	64	104	16.3193
((((((.(((((((((((....))))))))))).))))))	chr1:229693866-229694142(-)$1	1	3	43	15.6584
..(((...((((.((((......)).))...))))))).)	chr3:154042020-154042283(-)$1	1	56	96	14.2232
((.(((((..(.(((((......))))).)..))))))))	chr1:2323186-2323473(+)$1	1	76	116	13.4535
(.((((...(((.((((......).))).)))..))))..	chr16:600571-600842(+)$1	1	145	185	15.2864
((((((((......(((......)))..))))))))))))	chr19:18548137-18548424(-)$1	1	102	142	16.9377
...((((((((((.(((......))).))))))))))...	chr17:30264100-30264365(+)$1	1	79	119	21.8622

#PSSM
f : 0.15	= : 0.15	[ : 0.13	d : 0.11	c : 0.09	h : 0.05	g : 0.05	e : 0.03	i : 0.03	] : 0.01	# : 0.01	b : 0.01	a : 0.01	: : 0.01	! : 0.01	" : 0.01	
= : 0.21	f : 0.13	c : 0.11	g : 0.09	d : 0.07	h : 0.05	b : 0.05	[ : 0.05	i : 0.03	e : 0.03	" : 0.03	# : 0.01	: : 0.01	! : 0.01	
= : 0.23	f : 0.13	g : 0.11	[ : 0.11	e : 0.05	d : 0.05	c : 0.05	" : 0.05	i : 0.03	h : 0.03	b : 0.03	# : 0.01	] : 0.01	
= : 0.23	f : 0.13	g : 0.09	c : 0.09	e : 0.07	[ : 0.07	i : 0.05	! : 0.03	h : 0.03	" : 0.03	b : 0.03	d : 0.03	a : 0.01	
= : 0.25	g : 0.13	i : 0.11	c : 0.09	f : 0.07	! : 0.05	b : 0.05	e : 0.05	[ : 0.03	h : 0.03	d : 0.03	" : 0.01	
= : 0.25	i : 0.11	g : 0.09	c : 0.09	" : 0.07	! : 0.05	e : 0.05	h : 0.03	a : 0.03	[ : 0.03	d : 0.03	b : 0.01	# : 0.01	: : 0.01	f : 0.01	
= : 0.29	g : 0.13	i : 0.11	" : 0.11	c : 0.05	! : 0.05	[ : 0.05	e : 0.05	# : 0.03	h : 0.01	a : 0.01	d : 0.01	
= : 0.31	g : 0.13	" : 0.13	i : 0.11	[ : 0.07	c : 0.07	! : 0.05	# : 0.03	a : 0.01	e : 0.01	
= : 0.33	i : 0.13	g : 0.09	" : 0.07	c : 0.07	[ : 0.05	e : 0.05	! : 0.05	# : 0.03	b : 0.01	d : 0.01	% : 0.01	
= : 0.33	c : 0.21	i : 0.13	g : 0.07	e : 0.05	" : 0.03	! : 0.03	a : 0.01	# : 0.01	b : 0.01	d : 0.01	% : 0.01	
= : 0.31	c : 0.15	i : 0.13	g : 0.09	[ : 0.07	e : 0.05	! : 0.03	" : 0.03	b : 0.01	d : 0.01	a : 0.01	% : 0.01	
= : 0.27	c : 0.13	i : 0.13	b : 0.07	g : 0.07	[ : 0.07	e : 0.05	" : 0.05	d : 0.03	! : 0.01	f : 0.01	% : 0.01	
= : 0.19	[ : 0.13	i : 0.11	e : 0.09	! : 0.09	g : 0.07	a : 0.07	b : 0.05	" : 0.05	d : 0.01	# : 0.01	f : 0.01	% : 0.01	
[ : 0.19	= : 0.17	d : 0.13	! : 0.11	i : 0.05	b : 0.05	" : 0.05	g : 0.03	a : 0.03	e : 0.03	# : 0.01	f : 0.01	c : 0.01	% : 0.01	
c : 0.35	d : 0.17	= : 0.17	b : 0.05	[ : 0.03	i : 0.03	g : 0.03	e : 0.03	# : 0.01	! : 0.01	f : 0.01	" : 0.01	
c : 0.37	= : 0.17	d : 0.15	b : 0.05	i : 0.03	g : 0.03	a : 0.03	e : 0.03	! : 0.01	# : 0.01	f : 0.01	" : 0.01	
c : 0.37	d : 0.15	= : 0.11	b : 0.05	[ : 0.05	i : 0.03	g : 0.03	a : 0.03	e : 0.03	! : 0.01	q : 0.01	" : 0.01	f : 0.01	
o : 0.50	c : 0.11	= : 0.07	a : 0.05	n : 0.03	d : 0.03	q : 0.03	m : 0.01	i : 0.01	[ : 0.01	g : 0.01	" : 0.01	p : 0.01	
o : 0.50	n : 0.11	m : 0.09	c : 0.09	q : 0.03	= : 0.03	i : 0.01	a : 0.01	! : 0.01	" : 0.01	p : 0.01	
o : 0.50	m : 0.11	n : 0.11	c : 0.07	l : 0.05	q : 0.03	! : 0.01	d : 0.01	= : 0.01	p : 0.01	
o : 0.50	n : 0.13	l : 0.13	m : 0.11	d : 0.03	q : 0.03	p : 0.01	
o : 0.50	n : 0.13	l : 0.13	m : 0.09	d : 0.05	q : 0.03	p : 0.01	
o : 0.50	n : 0.09	l : 0.07	= : 0.07	a : 0.05	d : 0.05	q : 0.03	c : 0.01	i : 0.01	p : 0.01	m : 0.01	
c : 0.35	d : 0.15	= : 0.11	b : 0.05	a : 0.05	] : 0.03	i : 0.03	q : 0.03	e : 0.03	g : 0.01	[ : 0.01	n : 0.01	p : 0.01	f : 0.01	
c : 0.39	d : 0.13	= : 0.11	b : 0.05	i : 0.05	g : 0.03	] : 0.03	e : 0.03	[ : 0.01	3 : 0.01	a : 0.01	n : 0.01	f : 0.01	q : 0.01	
c : 0.43	d : 0.11	= : 0.11	i : 0.07	] : 0.05	g : 0.03	a : 0.03	e : 0.03	2 : 0.01	4 : 0.01	3 : 0.01	f : 0.01	
c : 0.15	] : 0.15	= : 0.13	d : 0.11	b : 0.09	i : 0.07	3 : 0.05	2 : 0.03	g : 0.03	e : 0.03	4 : 0.01	! : 0.01	a : 0.01	f : 0.01	
= : 0.17	c : 0.13	] : 0.11	b : 0.09	i : 0.09	g : 0.07	3 : 0.05	2 : 0.05	d : 0.03	e : 0.03	a : 0.03	4 : 0.01	! : 0.01	f : 0.01	
= : 0.29	] : 0.11	3 : 0.09	i : 0.09	g : 0.09	c : 0.07	e : 0.05	d : 0.03	b : 0.03	2 : 0.03	4 : 0.01	f : 0.01	
= : 0.31	i : 0.15	g : 0.13	c : 0.07	3 : 0.07	e : 0.05	d : 0.03	b : 0.03	] : 0.03	a : 0.03	f : 0.01	
= : 0.33	i : 0.15	g : 0.11	] : 0.07	c : 0.07	3 : 0.07	e : 0.05	d : 0.03	h : 0.01	f : 0.01	2 : 0.01	
= : 0.33	i : 0.15	c : 0.15	g : 0.09	e : 0.05	b : 0.03	2 : 0.03	3 : 0.03	a : 0.01	h : 0.01	f : 0.01	d : 0.01	
= : 0.31	i : 0.13	c : 0.11	g : 0.11	e : 0.07	2 : 0.05	] : 0.03	b : 0.03	3 : 0.03	h : 0.01	f : 0.01	d : 0.01	
= : 0.27	g : 0.15	i : 0.11	c : 0.11	] : 0.07	2 : 0.05	h : 0.03	[ : 0.03	b : 0.03	f : 0.01	3 : 0.01	d : 0.01	e : 0.01	
= : 0.25	g : 0.11	i : 0.11	] : 0.07	d : 0.07	c : 0.05	3 : 0.05	h : 0.03	b : 0.03	2 : 0.03	f : 0.03	e : 0.03	a : 0.01	: : 0.01	
= : 0.23	g : 0.11	i : 0.11	c : 0.09	] : 0.09	d : 0.07	f : 0.05	e : 0.05	h : 0.03	2 : 0.03	3 : 0.03	a : 0.01	
= : 0.23	g : 0.11	i : 0.11	e : 0.09	d : 0.09	c : 0.07	f : 0.07	3 : 0.05	h : 0.03	] : 0.03	2 : 0.01	a : 0.01	
= : 0.21	g : 0.11	i : 0.11	d : 0.09	e : 0.07	f : 0.07	c : 0.07	3 : 0.05	h : 0.03	2 : 0.03	a : 0.03	b : 0.03	
= : 0.17	g : 0.11	] : 0.09	3 : 0.07	e : 0.07	f : 0.07	i : 0.05	c : 0.05	2 : 0.05	d : 0.05	[ : 0.03	b : 0.03	h : 0.03	! : 0.01	
= : 0.15	c : 0.13	] : 0.13	g : 0.11	3 : 0.07	e : 0.07	f : 0.07	i : 0.05	d : 0.05	h : 0.03	! : 0.01	b : 0.01	2 : 0.01	

#score	825.2427328262393
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_CDS_m3_run2.txt

#BEAR
cc[bbeeeeennnnneeeee]b	chr16:2273698-2273954(+)$1	256	139	161	11.7153
d!!bb####annnnna4444bb	chr2:54197815-54198043(-)$1	228	31	53	11.0979
ffffff[cccnnnnnccc22ff	chr22:37904549-37904831(-)$1	282	90	112	12.7267
dd[gggggggnnnnnggggggg	chr14:24606634-24606888(+)$1	254	80	102	12.2241
FF:ccc[cccnnnnnccc]ccc	chr11:592407-592732(+)$1	325	292	314	11.1539
####ffffffnnnnnffffff5	chr2:74655733-74656012(-)$1	279	132	154	10.6211
ccccc[a[bbnnnnnbb]a]cc	chr9:139726762-139727063(+)$1	301	168	190	11.8362
d[ccc[bb[annnnna]bb]cc	chr19:42392111-42392394(+)$1	283	35	57	10.7557
d"""aa[cccnnnnnccc]a]a	chr6:32147638-32147890(+)$1	252	108	130	13.0029
ddd[ddddbbnnnnnbb]dddd	chr14:24108973-24109186(+)$1	213	54	76	10.4578
ffff[eeeeennnnneeeee]f	chr3:52020881-52021153(+)$1	272	71	93	12.3809
fffbbeeeeennnnneeeee22	chr5:140048485-140048794(+)$1	309	205	227	11.4710
ccc!!eeeeennnnneeeee33	chr5:175956935-175957203(-)$1	268	108	130	12.5136
a[ffffffbbnnnnnbb]ffff	chr20:61459166-61459431(+)$1	265	160	182	11.4459
GGdddd[cccnnnnnccc22dd	chr20:61593985-61594245(+)$1	260	214	236	11.1772
GGdddd[cccnnnnncccdddd	chr7:75615490-75615767(+)$1	277	181	203	10.7606
ccc[ffffffnnnnnffffff]	chr19:7675607-7675891(+)$1	284	39	61	11.6896
gggeeeee[annnnna]eeeee	chr19:47104590-47104871(+)$1	281	23	45	12.0781
e[eeeeecccnnnnnccc]eee	chr19:17970653-17970926(+)$1	273	199	221	12.6792
ee[gggggggnnnnnggggggg	chr16:16259309-16259594(-)$1	285	143	165	12.3129
iiii####bbnnnnnbb4444i	chr1:228295674-228295954(-)$1	280	43	65	11.9903
eeeeeeeeeennnnneeeee]e	chr16:67234214-67234470(+)$1	256	220	242	11.9488
fffccc[cccnnnnnccc333c	chr16:88780813-88781097(+)$1	284	170	192	13.1941
gggggggcccnnnnnccc]ggg	chr1:33138069-33138398(+)$1	329	127	149	13.1433
ffff[eeeeennnnneeeeeff	chr20:60887978-60888256(-)$1	278	248	270	12.2144
eeeeeeeeeennnnneeeee]e	chr5:72794380-72794681(+)$1	301	266	288	11.9488
fffff!!cccnnnnnccc22ff	chr17:36863864-36864140(+)$1	276	223	245	12.8239
gggg[eeeeennnnneeeee22	chr19:5941711-5941960(-)$1	249	43	65	12.2871
ffff[eeeeennnnneeeee]f	chr19:15226610-15226880(-)$1	270	140	162	12.3809
ccc[a!!cccnnnnnccc22a]	chr17:37901878-37902139(+)$1	261	84	106	13.0112
gggg[a!!bbnnnnnbb333a]	chr9:117063612-117063861(+)$1	249	156	178	12.7989
!ffffffcccnnnnnccc]fff	chr22:31654921-31655218(+)$1	297	218	240	12.5339
dddgggggggnnnnnggggggg	chr1:44442108-44442383(+)$1	275	82	104	11.9925
"""bb!!cccnnnnnccc22bb	chr19:13006654-13006928(+)$1	274	76	98	11.9968
dddd!!ddddnnnnndddd22d	chr1:1355852-1356127(-)$1	275	31	53	10.6000
ggeeeee[bbnnnnnbb]eeee	chr1:55352282-55352553(-)$1	271	115	137	11.9004
g"""ffffffnnnnnffffff]	chr16:89713418-89713673(-)$1	255	217	239	11.8324
======[cccnnnnnccc]===	chr11:66372979-66373286(+)$1	307	145	167	13.5038
d####eeeeennnnneeeee]d	chr19:49514283-49514550(+)$1	267	178	200	12.1760
ccc[ccc[bbnnnnnbb22ccc	chr2:162017197-162017480(+)$1	283	206	228	11.6004
==========nnnnn=======	chr16:31193724-31193980(+)$1	256	12	34	12.9355
ggggffffffnnnnnffffff]	chr16:81726983-81727242(+)$1	259	185	207	11.8493
GGGgggggggnnnnnggggggg	chr2:62115303-62115625(-)$1	322	14	36	10.9980
==========nnnnn=======	chr12:51392920-51393221(-)$1	301	204	226	12.9355
!!eeeee[bbnnnnnbb22eee	chr22:37899931-37900188(-)$1	257	35	57	11.7760
dddd!!ddddnnnnnddddddd	chr17:79661821-79662066(+)$1	245	143	165	10.3573
eeeccc[cccnnnnnccc]ccc	chr16:2014231-2014478(-)$1	247	202	224	12.6031

#otherMatches

#Seq PSSM
GGAUGGCCCGAGCUGCGGGCUC	chr16:2273698-2273954(+)$1	256	139	161	11.7153
CGACGAAGACGCGGAGGAGGCG	chr2:54197815-54198043(-)$1	228	31	53	11.0979
CAGGGUGGGCCCCUAGCCAGAC	chr22:37904549-37904831(-)$1	282	90	112	12.7267
CUCUCUUUCUGCAGAAGGAAGA	chr14:24606634-24606888(+)$1	254	80	102	12.2241
CGUGCCCUGCUGCGUGCAAGGC	chr11:592407-592732(+)$1	325	292	314	11.1539
CUUCCUCCUCCCCCAGAGGAGA	chr2:74655733-74656012(-)$1	279	132	154	10.6211
CUGCUCGGAGAUUGGCUGCUGG	chr9:139726762-139727063(+)$1	301	168	190	11.8362
CAGGGAGAUGGAAGACUUCGCC	chr19:42392111-42392394(+)$1	283	35	57	10.7557
AUUUGCCGGCUUCCUGUCUGAC	chr6:32147638-32147890(+)$1	252	108	130	13.0029
ACUUCCUGGUGUGCAGCGCAGG	chr14:24108973-24109186(+)$1	213	54	76	10.4578
GUCUCCAGCCCCUCAGGCUGAA	chr3:52020881-52021153(+)$1	272	71	93	12.3809
AGUGAAGGUACCAUCUACCUCU	chr5:140048485-140048794(+)$1	309	205	227	11.4710
UGCCCUACUUCCUGUAAGUAUC	chr5:175956935-175957203(-)$1	268	108	130	12.5136
CGGUGAGUGCACGUGGCUGCUC	chr20:61459166-61459431(+)$1	265	160	182	11.4459
CCGGAGACGAUGGCUUUGACCU	chr20:61593985-61594245(+)$1	260	214	236	11.1772
CCAGGGAUGUGCAGAACACCUU	chr7:75615490-75615767(+)$1	277	181	203	10.7606
UUGUGCAAGUGAAGGACUUGCC	chr19:7675607-7675891(+)$1	284	39	61	11.6896
CGGAGCUGGAACUGCUGCAGCU	chr19:47104590-47104871(+)$1	281	23	45	12.0781
GGCGUGGGCCGGGUUGGUGCCG	chr19:17970653-17970926(+)$1	273	199	221	12.6792
ACCGGCUgaggucaacucagcc	chr16:16259309-16259594(-)$1	285	143	165	12.3129
GGGGAUUACUGUCAGGGGCCAC	chr1:228295674-228295954(-)$1	280	43	65	11.9903
CAUCCCCUUUGUGAGGAAGGUG	chr16:67234214-67234470(+)$1	256	220	242	11.9488
UCUGCUUGCAGACAGUGCCACG	chr16:88780813-88781097(+)$1	284	170	192	13.1941
UAAGGGUAAAUCUGUUUUAACU	chr1:33138069-33138398(+)$1	329	127	149	13.1433
GGGCUGGCCUGAAAAAGGCCGU	chr20:60887978-60888256(-)$1	278	248	270	12.2144
Uggccgggccgggcaggcccug	chr5:72794380-72794681(+)$1	301	266	288	11.9488
UCGUGCUGCAGUACGUGCCUCA	chr17:36863864-36864140(+)$1	276	223	245	12.8239
CGGCCCCGAGAGUUGCUCGGCU	chr19:5941711-5941960(-)$1	249	43	65	12.2871
CCGACUAGGUCUGGUGCCUGUU	chr19:15226610-15226880(-)$1	270	140	162	12.3809
UCUCCCACUGCUCCACAGAAGA	chr17:37901878-37902139(+)$1	261	84	106	13.0112
GGGGCGGGGCGUGGGGCGGGCA	chr9:117063612-117063861(+)$1	249	156	178	12.7989
UUUGCCUGUAUGAGCUGCAAGG	chr22:31654921-31655218(+)$1	297	218	240	12.5339
GCAGGAAGGACGGUUUCUUUCU	chr1:44442108-44442383(+)$1	275	82	104	11.9925
gccACGAGGAUAAUUUUUGAGU	chr19:13006654-13006928(+)$1	274	76	98	11.9968
GUCCCUUCUCUggaugggguag	chr1:1355852-1356127(-)$1	275	31	53	10.6000
AGCUGGCGUUGGAGAGGGGUUG	chr1:55352282-55352553(-)$1	271	115	137	11.9004
CAGGACCCUGACAGGUAGGGUG	chr16:89713418-89713673(-)$1	255	217	239	11.8324
GGUGGGGGCCAAACAGGUACCC	chr11:66372979-66373286(+)$1	307	145	167	13.5038
ACGAGGUCCACAUGCUGGACAU	chr19:49514283-49514550(+)$1	267	178	200	12.1760
AGUAUCGUGGUUACUCUUUCGA	chr2:162017197-162017480(+)$1	283	206	228	11.6004
CCCAAAGGUGAGUGCUAUUUUU	chr16:31193724-31193980(+)$1	256	12	34	12.9355
UGAAGCUUGUCACCAACAGGCA	chr16:81726983-81727242(+)$1	259	185	207	11.8493
CGACUGCCGGGGCUGCCGGCGG	chr2:62115303-62115625(-)$1	322	14	36	10.9980
GAAGCUAGAAGCAUUUUUUGGC	chr12:51392920-51393221(-)$1	301	204	226	12.9355
GGGGCUGCCGUUUCCCGAACAG	chr22:37899931-37900188(-)$1	257	35	57	11.7760
UCUCAACCGGAACUACUGGGAG	chr17:79661821-79662066(+)$1	245	143	165	10.3573
GUACGCGUCGGUCGUUGGGGCG	chr16:2014231-2014478(-)$1	247	202	224	12.6031

#DB
((.(((((((.....))))).)	chr16:2273698-2273954(+)$1	1	139	161	11.7153
(..((....(.....)....))	chr2:54197815-54198043(-)$1	1	31	53	11.0979
((((((.(((.....)))..))	chr22:37904549-37904831(-)$1	1	90	112	12.7267
((.(((((((.....)))))))	chr14:24606634-24606888(+)$1	1	80	102	12.2241
)).(((.(((.....))).)))	chr11:592407-592732(+)$1	1	292	314	11.1539
....((((((.....)))))).	chr2:74655733-74656012(-)$1	1	132	154	10.6211
(((((.(.((.....)).).))	chr9:139726762-139727063(+)$1	1	168	190	11.8362
(.(((.((.(.....).)).))	chr19:42392111-42392394(+)$1	1	35	57	10.7557
(...((.(((.....))).).)	chr6:32147638-32147890(+)$1	1	108	130	13.0029
(((.((((((.....)).))))	chr14:24108973-24109186(+)$1	1	54	76	10.4578
((((.(((((.....))))).)	chr3:52020881-52021153(+)$1	1	71	93	12.3809
((((((((((.....)))))..	chr5:140048485-140048794(+)$1	1	205	227	11.4710
(((..(((((.....)))))..	chr5:175956935-175957203(-)$1	1	108	130	12.5136
(.((((((((.....)).))))	chr20:61459166-61459431(+)$1	1	160	182	11.4459
))((((.(((.....)))..))	chr20:61593985-61594245(+)$1	1	214	236	11.1772
((((((.(((.....)))))))	chr7:75615490-75615767(+)$1	1	181	203	10.7606
(((.((((((.....)))))).	chr19:7675607-7675891(+)$1	1	39	61	11.6896
((((((((.(.....).)))))	chr19:47104590-47104871(+)$1	1	23	45	12.0781
(.((((((((.....))).)))	chr19:17970653-17970926(+)$1	1	199	221	12.6792
((.(((((((.....)))))))	chr16:16259309-16259594(-)$1	1	143	165	12.3129
((((....((.....))....)	chr1:228295674-228295954(-)$1	1	43	65	11.9903
((((((((((.....))))).)	chr16:67234214-67234470(+)$1	1	220	242	11.9488
)))(((.(((.....)))...)	chr16:88780813-88781097(+)$1	1	170	192	13.1941
((((((((((.....))).)))	chr1:33138069-33138398(+)$1	1	127	149	13.1433
((((.(((((.....)))))))	chr20:60887978-60888256(-)$1	1	248	270	12.2144
((((((((((.....))))).)	chr5:72794380-72794681(+)$1	1	266	288	11.9488
(((((..(((.....)))..))	chr17:36863864-36864140(+)$1	1	223	245	12.8239
((((.(((((.....)))))..	chr19:5941711-5941960(-)$1	1	43	65	12.2871
((((.(((((.....))))).)	chr19:15226610-15226880(-)$1	1	140	162	12.3809
(((.(..(((.....)))..).	chr17:37901878-37902139(+)$1	1	84	106	13.0112
((((.(..((.....))...).	chr9:117063612-117063861(+)$1	1	156	178	12.7989
.(((((((((.....))).)))	chr22:31654921-31655218(+)$1	1	218	240	12.5339
)))(((((((.....)))))))	chr1:44442108-44442383(+)$1	1	82	104	11.9925
...((..(((.....)))..))	chr19:13006654-13006928(+)$1	1	76	98	11.9968
((((..((((.....))))..)	chr1:1355852-1356127(-)$1	1	31	53	10.6000
))(((((.((.....)).))))	chr1:55352282-55352553(-)$1	1	115	137	11.9004
(...((((((.....)))))).	chr16:89713418-89713673(-)$1	1	217	239	11.8324
((((((.(((.....))).)))	chr11:66372979-66373286(+)$1	1	145	167	13.5038
(....(((((.....))))).)	chr19:49514283-49514550(+)$1	1	178	200	12.1760
(((.(((.((.....))..)))	chr2:162017197-162017480(+)$1	1	206	228	11.6004
((((((((((.....)))))))	chr16:31193724-31193980(+)$1	1	12	34	12.9355
((((((((((.....)))))).	chr16:81726983-81727242(+)$1	1	185	207	11.8493
((((((((((.....)))))))	chr2:62115303-62115625(-)$1	1	14	36	10.9980
((((((((((.....)))))))	chr12:51392920-51393221(-)$1	1	204	226	12.9355
..(((((.((.....))..)))	chr22:37899931-37900188(-)$1	1	35	57	11.7760
((((..((((.....)))))))	chr17:79661821-79662066(+)$1	1	143	165	10.3573
)))(((.(((.....))).)))	chr16:2014231-2014478(-)$1	1	202	224	12.6031

#PSSM
d : 0.19	f : 0.14	g : 0.14	c : 0.12	e : 0.10	G : 0.06	= : 0.06	! : 0.04	F : 0.02	# : 0.02	a : 0.02	i : 0.02	" : 0.02	
f : 0.17	c : 0.12	g : 0.12	d : 0.10	e : 0.08	[ : 0.06	" : 0.06	G : 0.06	= : 0.06	! : 0.04	# : 0.04	F : 0.02	i : 0.02	
f : 0.19	c : 0.12	d : 0.12	e : 0.12	g : 0.10	[ : 0.06	" : 0.06	= : 0.06	# : 0.04	! : 0.02	: : 0.02	i : 0.02	G : 0.02	
g : 0.17	f : 0.14	e : 0.12	c : 0.10	b : 0.08	[ : 0.08	d : 0.08	= : 0.06	# : 0.04	" : 0.04	! : 0.02	i : 0.02	
f : 0.17	c : 0.12	e : 0.12	g : 0.10	[ : 0.10	b : 0.08	d : 0.06	! : 0.06	= : 0.06	a : 0.04	# : 0.04	
e : 0.29	f : 0.14	g : 0.10	! : 0.10	c : 0.08	d : 0.06	= : 0.06	# : 0.04	[ : 0.04	a : 0.04	
e : 0.29	[ : 0.17	f : 0.12	g : 0.10	! : 0.08	d : 0.06	# : 0.04	= : 0.04	a : 0.02	b : 0.02	c : 0.02	
c : 0.29	e : 0.23	f : 0.10	g : 0.08	[ : 0.08	d : 0.06	# : 0.04	= : 0.04	b : 0.02	! : 0.02	
c : 0.29	e : 0.21	b : 0.17	g : 0.08	f : 0.08	[ : 0.04	d : 0.04	= : 0.04	# : 0.02	
c : 0.29	e : 0.21	b : 0.17	g : 0.08	f : 0.08	a : 0.06	d : 0.04	= : 0.04	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
c : 0.29	e : 0.21	b : 0.17	g : 0.08	f : 0.08	a : 0.06	d : 0.04	= : 0.04	
c : 0.29	e : 0.21	b : 0.17	g : 0.08	f : 0.08	] : 0.04	d : 0.04	= : 0.04	4 : 0.02	
c : 0.29	e : 0.23	g : 0.08	f : 0.08	] : 0.08	4 : 0.04	d : 0.04	2 : 0.04	= : 0.04	b : 0.02	3 : 0.02	
e : 0.25	2 : 0.14	] : 0.14	f : 0.10	g : 0.08	d : 0.08	4 : 0.04	3 : 0.04	= : 0.04	a : 0.02	b : 0.02	
e : 0.29	2 : 0.12	f : 0.12	g : 0.10	c : 0.06	d : 0.06	= : 0.06	4 : 0.04	] : 0.04	3 : 0.04	a : 0.02	
f : 0.19	] : 0.14	g : 0.10	c : 0.10	d : 0.08	e : 0.08	2 : 0.06	= : 0.06	b : 0.04	3 : 0.04	a : 0.04	4 : 0.02	
f : 0.14	c : 0.12	d : 0.12	e : 0.12	g : 0.10	] : 0.10	b : 0.06	= : 0.06	2 : 0.04	5 : 0.02	a : 0.02	3 : 0.02	i : 0.02	

#score	563.4354106050597
#seq	47
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_UTR_m3_run1.txt

#BEAR
::eeeeettttttttttteeeeebb!	chr17:57697239-57697454(+)$1	215	167	193	19.4215
ee!!ccctttttttttttccc]eeee	chrX:153581585-153581829(-)$1	244	5	31	23.6615
ff!!cccwwwwwwwwwwwwwwccc33	chr1:27105786-27106050(+)$1	264	145	171	22.0618
=======ttttttttttt========	chr16:28222741-28223016(-)$1	275	82	108	23.5358
ggggggguuuuuuuuuuuuggggggg	chr12:56568333-56568648(-)$1	315	169	195	23.3955
hhhhhhuuuuuuuuuuuuhhhhhhhh	chr11:9406239-9406495(+)$1	256	101	127	21.0578
ffffffwwwwwwwwwwwwwwffffff	chr5:137895620-137895872(-)$1	252	118	144	21.2132
ggggccctttttttttttccc]gggg	chr19:59056323-59056562(+)$1	239	181	207	24.3027
gggg[cccssssssssssccc]gggg	chr1:182360797-182361027(-)$1	230	59	85	17.0990
ff[cccuuuuuuuuuuuucccfffff	chrX:117629773-117630046(+)$1	273	92	118	23.3738
""eeeeettttttttttteeeee===	chr3:127339485-127339726(+)$1	241	189	215	22.1923
ee!!ccctttttttttttccc22eee	chr8:17780392-17780663(+)$1	271	187	213	23.3407
eeeeevvvvvvvvvvvvveeeee===	chr3:184049461-184049685(+)$1	224	88	114	21.7791
ee[ddddvvvvvvvvvvvvvdddd]e	chr17:57737749-57737964(+)$1	215	16	42	21.9215
$a!!bbvvvvvvvvvvvvvbb22a33	chr22:29696219-29696541(+)$1	322	125	151	22.0343
cccddddwwwwwwwwwwwwwwdddd]	chr9:95055841-95056072(-)$1	231	174	200	20.7736
[cccwwwwwwwwwwwwwwccc]dddd	chrX:40944870-40945171(+)$1	301	247	273	21.4027
dd!!cccvvvvvvvvvvvvvccc22d	chrX:153582489-153582697(-)$1	208	146	172	22.5071
gggggggtttttttttttggggggg:	chr9:123171409-123171667(-)$1	258	110	136	22.4095
cc[ddddtttttttttttddddccc4	chr7:148427104-148427403(+)$1	299	137	163	22.4420
cc!!cccwwwwwwwwwwwwwwccccc	chr2:96950904-96951146(-)$1	242	13	39	22.0079
ee[ddddvvvvvvvvvvvvvdddd]e	chr19:42409988-42410265(+)$1	277	85	111	21.9215
=====vvvvvvvvvvvvv========	chr11:4127285-4127529(+)$1	244	200	226	22.9719
iiicccuuuuuuuuuuuuccc]iiii	chr19:49994998-49995225(+)$1	227	128	154	24.2628
hhhhhhhttttttttttthhhhhhhh	chr9:139702291-139702574(+)$1	283	15	41	20.7075
hhhhhhvvvvvvvvvvvvvhhhhhhh	chr1:115259752-115259995(-)$1	243	154	180	21.2358
fffffbbtttttttttttbb]fffff	chr5:139781407-139781651(+)$1	244	202	228	21.6063
ff[dddduuuuuuuuuuuudddd]ff	chr11:57076267-57076571(-)$1	304	103	129	22.1247
ffffffvvvvvvvvvvvvvffffff]	chrX:153588123-153588341(-)$1	218	12	38	22.3409
:ffffffuuuuuuuuuuuuffffff:	chr1:38061369-38061636(-)$1	267	233	259	20.4112
ggyyyyyyyyyyyyyyyyggggggg]	chrX:153582748-153582951(-)$1	203	49	75	19.4392
ffffffuuuuuuuuuuuuffffff44	chr9:95021131-95021374(-)$1	243	13	39	22.2692
iiiiwwwwwwwwwwwwwwiiiiiiii	chr1:19438961-19439183(-)$1	222	92	118	21.5300
ggggggwwwwwwwwwwwwwwgggggg	chr11:9406096-9406364(+)$1	268	88	114	22.5821
d[eeeeettttttttttteeeee]dd	chr5:71403198-71403503(+)$1	305	98	124	21.8113
b!!ddddyyyyyyyyyyyyyyyyddd	chr9:35731992-35732210(-)$1	218	23	49	18.5331
:eeeeevvvvvvvvvvvvveeeee::	chr17:57741140-57741348(+)$1	208	1	27	19.4276
[cccwwwwwwwwwwwwwwccc22bb2	chrX:153581898-153582122(-)$1	224	140	166	20.8484
d[a[cccuuuuuuuuuuuucccaddd	chr6:160210422-160210684(-)$1	262	49	75	23.1163
ddd[ccctttttttttttccc]dddd	chr12:57039591-57039849(-)$1	258	180	206	23.1230
iiiiiixxxxxxxxxxxxxxxiiiii	chr2:178087969-178088233(+)$1	264	147	173	17.2344
:fffffftttttttttttffffff:c	chr4:2896297-2896561(+)$1	264	20	46	20.4043
:fffffftttttttttttffffff::	chr17:40061720-40061970(-)$1	250	220	246	19.5141
[dddd[atttttttttttaddddggg	chrX:153592798-153593021(-)$1	223	191	217	22.6815
ff:cccuuuuuuuuuuuuccc:dddd	chr7:30671820-30672070(+)$1	250	164	190	21.1926
==!!cccssssssssssccc4444==	chr6:90529196-90529522(-)$1	326	238	264	16.6269
"""dddduuuuuuuuuuuudddd333	chr7:99697185-99697437(-)$1	252	8	34	22.3559
hhcccvvvvvvvvvvvvvccc333hh	chr3:33840062-33840330(+)$1	268	173	199	22.3977
cc!!ccctttttttttttccc22ccc	chr17:26988808-26989095(-)$1	287	124	150	23.8458
gfffffftttttttttttffffff22	chrX:53440153-53440429(-)$1	276	161	187	22.1292
:bbcccuuuuuuuuuuuuccc]bb::	chr6:31763254-31763509(-)$1	255	167	193	19.9487
[ccc[bbtttttttttttbb]ccc22	chrX:153583102-153583328(-)$1	226	15	41	22.2767
dddd[bbvvvvvvvvvvvvvbbdddd	chr19:49589584-49589851(+)$1	267	34	60	20.8314
cc[cccuuuuuuuuuuuuccc22ccc	chrX:153581374-153581613(-)$1	239	37	63	23.7309
iiii[cccssssssssssccc]iiii	chr11:46867671-46867932(-)$1	261	141	167	17.1289
ggggggwwwwwwwwwwwwwwgggggg	chr10:43883146-43883439(-)$1	293	185	211	22.5821
dddd[bbtttttttttttbb]ddddc	chr3:184045635-184045880(+)$1	245	171	197	21.4572
gggggggtttttttttttggggggg2	chr21:16436963-16437408(-)$1	445	62	88	23.2321
ggggggwwwwwwwwwwwwwwgggggg	chr2:216973976-216974244(+)$1	268	81	107	22.5821

#otherMatches

#Seq PSSM
cuucuccuccucucccuuggagagcc	chr17:57697239-57697454(+)$1	215	167	193	19.4215
UGACGACUCCAUGCGUAUGUCCCACC	chrX:153581585-153581829(-)$1	244	5	31	23.6615
GGGGGGACACCACUGAGCAUAUCCAG	chr1:27105786-27106050(+)$1	264	145	171	22.0618
CUUUUUCAGUUUCCUUGGGGAGGGGC	chr16:28222741-28223016(-)$1	275	82	108	23.5358
CGCCUGCCGCCGAAACCUAGCGGGUG	chr12:56568333-56568648(-)$1	315	169	195	23.3955
CGGGGCACUAUGGACCCAGCCCUGCG	chr11:9406239-9406495(+)$1	256	101	127	21.0578
UGGCAGAGCCCCAAGUAAAGCUGUCA	chr5:137895620-137895872(-)$1	252	118	144	21.2132
CUGCCUUUGAUUCCGACUGGGUGCAG	chr19:59056323-59056562(+)$1	239	181	207	24.3027
cccgggccgcggAUAAAGGGUGCGGG	chr1:182360797-182361027(-)$1	230	59	85	17.0990
gccggggcAGUGAGUCCACCCGCCCG	chrX:117629773-117630046(+)$1	273	92	118	23.3738
GAGCUUCAUAGACACACAGAAGUUCA	chr3:127339485-127339726(+)$1	241	189	215	22.1923
AGCCAGGAAACGUGUGGGCCUCUCUG	chr8:17780392-17780663(+)$1	271	187	213	23.3407
CGUUAGUUCGAGCCCUCAUGACGGCU	chr3:184049461-184049685(+)$1	224	88	114	21.7791
UGUGGAAGAAGAAAACAUAAUUCCUU	chr17:57737749-57737964(+)$1	215	16	42	21.9215
UCUUCCUUCUUUUAAAAAUGGUUGUU	chr22:29696219-29696541(+)$1	322	125	151	22.0343
CCUCAGGUACGCCCUCUCUUCCCUGC	chr9:95055841-95056072(-)$1	231	174	200	20.7736
GGCCAAGGAGGAGGAGGAGGCGGGCG	chrX:40944870-40945171(+)$1	301	247	273	21.4027
UGGACAUCCGCUAUGACAACAUGCAC	chrX:153582489-153582697(-)$1	208	146	172	22.5071
CUCCAGGAAGACCGUGAGCCUGGAGC	chr9:123171409-123171667(-)$1	258	110	136	22.4095
CACGGCCUGAAGCAGAUUGGCCUGGA	chr7:148427104-148427403(+)$1	299	137	163	22.4420
GUCCGUCUCUUCUUCCUUCUUGAUAC	chr2:96950904-96951146(-)$1	242	13	39	22.0079
UCUGUUCCCCAAUCCAGCCCGGACCG	chr19:42409988-42410265(+)$1	277	85	111	21.9215
ACUCUCAGAAAAGUAAUAAGGGUACU	chr11:4127285-4127529(+)$1	244	200	226	22.9719
CCCUGGAAUGUACGGGACCCAGGGGC	chr19:49994998-49995225(+)$1	227	128	154	24.2628
CGUGCGCAUGCGCCGAccgcgcgcgc	chr9:139702291-139702574(+)$1	283	15	41	20.7075
GUGUAGCUUCUGUUCAACUUUAUAUC	chr1:115259752-115259995(-)$1	243	154	180	21.2358
GCUCCGCGAUCCGCCCCAGCUGGGGC	chr5:139781407-139781651(+)$1	244	202	228	21.6063
UGAGGUCGGGGAGGGAGGAGGCCACA	chr11:57076267-57076571(-)$1	304	103	129	22.1247
CGGGGGACAGGGACCAGAACCCCCGA	chrX:153588123-153588341(-)$1	218	12	38	22.3409
AGGACGGAGCACCAUCAACCCGUCCA	chr1:38061369-38061636(-)$1	267	233	259	20.4112
ACCCCAGAUCCUCCCACUGUCCCUCA	chrX:153582748-153582951(-)$1	203	49	75	19.4392
UUGCUCUCUCAAUAUGUCGAGUAGUA	chr9:95021131-95021374(-)$1	243	13	39	22.2692
UUUGAUUAUAAUCUUCGCCGAGGGGC	chr1:19438961-19439183(-)$1	222	92	118	21.5300
UGGCGCUUCUCUUUCCUUUCGCGCCG	chr11:9406096-9406364(+)$1	268	88	114	22.5821
CUGCCGCAGUGGAGAGGAGCGGCCGG	chr5:71403198-71403503(+)$1	305	98	124	21.8113
CAGGACGGAAGUGGCCGAGAGAGUGU	chr9:35731992-35732210(-)$1	218	23	49	18.5331
CAACUGCUCAUUUCUAAAACAGUUCA	chr17:57741140-57741348(+)$1	208	1	27	19.4276
AUUCUAGUCAAGUACAAUGAACAGCA	chrX:153581898-153582122(-)$1	224	140	166	20.8484
CAGUAGCUCCUGGGACAUCGCUCGGG	chr6:160210422-160210684(-)$1	262	49	75	23.1163
CCCCCAGCUCAGCUCUUACUGCGGGC	chr12:57039591-57039849(-)$1	258	180	206	23.1230
AGCAGCAGUAAAAAAAAAAAAGUUGU	chr2:178087969-178088233(+)$1	264	147	173	17.2344
AAUCUACAAGGAGAUAUAGUAGAUCG	chr4:2896297-2896561(+)$1	264	20	46	20.4043
CCUGUCCCCACUUCCCCAGGACAGCC	chr17:40061720-40061970(-)$1	250	220	246	19.5141
AUGGCACUCUGUGUCCCUGGCCACCC	chrX:153592798-153593021(-)$1	223	191	217	22.6815
ACAGUGAACAAGACCCCCCACACUGC	chr7:30671820-30672070(+)$1	250	164	190	21.1926
UUAAUCGCAGCCAAGAACGAGAAGAG	chr6:90529196-90529522(-)$1	326	238	264	16.6269
GGUGAGCAAAGUGAAUGUGGCUCUGA	chr7:99697185-99697437(-)$1	252	8	34	22.3559
UCGGUGCAGCUGAAAAAGACCUCAGA	chr3:33840062-33840330(+)$1	268	173	199	22.3977
GGUUUCGCCAUUAGCUUCCGGUUCCG	chr17:26988808-26989095(-)$1	287	124	150	23.8458
AAGGCUGAAGAGGACACACAGUUUAA	chrX:53440153-53440429(-)$1	276	161	187	22.1292
AGUCUGACCAUCUCCCUCCAGUACGU	chr6:31763254-31763509(-)$1	255	167	193	19.9487
CGUGGUGGAGAAUGAGGACGGCACUU	chrX:153583102-153583328(-)$1	226	15	41	22.2767
GCAGACCCGAUCUAACCUAAGGCUGU	chr19:49589584-49589851(+)$1	267	34	60	20.8314
CCAGGGAUUUCAUUCGUGCCCAAGGA	chrX:153581374-153581613(-)$1	239	37	63	23.7309
CUUGGUUCUGACCCAGCUGAGGUGAG	chr11:46867671-46867932(-)$1	261	141	167	17.1289
GUGCAGAACUUCCUCUCUGACUGCAC	chr10:43883146-43883439(-)$1	293	185	211	22.5821
UGGGCCUCCCACUUAUACAGACCCAC	chr3:184045635-184045880(+)$1	245	171	197	21.4572
GCGAGGCGCUCAAAGUCAGCCUCGCA	chr21:16436963-16437408(-)$1	445	62	88	23.2321
AGCGGCUCUUUCCGCUAUCUGCCGCU	chr2:216973976-216974244(+)$1	268	81	107	22.5821

#DB
..(((((...........)))))((.	chr17:57697239-57697454(+)$1	1	167	193	19.4215
((..(((...........))).))))	chrX:153581585-153581829(-)$1	1	5	31	23.6615
((..(((..............)))..	chr1:27105786-27106050(+)$1	1	145	171	22.0618
(((((((...........))))))))	chr16:28222741-28223016(-)$1	1	82	108	23.5358
(((((((............)))))))	chr12:56568333-56568648(-)$1	1	169	195	23.3955
((((((............))))))))	chr11:9406239-9406495(+)$1	1	101	127	21.0578
((((((..............))))))	chr5:137895620-137895872(-)$1	1	118	144	21.2132
(((((((...........))).))))	chr19:59056323-59056562(+)$1	1	181	207	24.3027
((((.(((..........))).))))	chr1:182360797-182361027(-)$1	1	59	85	17.0990
((.(((............))))))))	chrX:117629773-117630046(+)$1	1	92	118	23.3738
..(((((...........))))))))	chr3:127339485-127339726(+)$1	1	189	215	22.1923
((..(((...........)))..)))	chr8:17780392-17780663(+)$1	1	187	213	23.3407
(((((.............))))))))	chr3:184049461-184049685(+)$1	1	88	114	21.7791
((.((((.............)))).)	chr17:57737749-57737964(+)$1	1	16	42	21.9215
.(..((.............))..)..	chr22:29696219-29696541(+)$1	1	125	151	22.0343
(((((((..............)))).	chr9:95055841-95056072(-)$1	1	174	200	20.7736
.(((..............))).))))	chrX:40944870-40945171(+)$1	1	247	273	21.4027
((..(((.............)))..)	chrX:153582489-153582697(-)$1	1	146	172	22.5071
(((((((...........))))))).	chr9:123171409-123171667(-)$1	1	110	136	22.4095
((.((((...........))))))).	chr7:148427104-148427403(+)$1	1	137	163	22.4420
((..(((..............)))))	chr2:96950904-96951146(-)$1	1	13	39	22.0079
((.((((.............)))).)	chr19:42409988-42410265(+)$1	1	85	111	21.9215
(((((.............))))))))	chr11:4127285-4127529(+)$1	1	200	226	22.9719
((((((............))).))))	chr19:49994998-49995225(+)$1	1	128	154	24.2628
(((((((...........))))))))	chr9:139702291-139702574(+)$1	1	15	41	20.7075
((((((.............)))))))	chr1:115259752-115259995(-)$1	1	154	180	21.2358
(((((((...........)).)))))	chr5:139781407-139781651(+)$1	1	202	228	21.6063
((.((((............)))).))	chr11:57076267-57076571(-)$1	1	103	129	22.1247
((((((.............)))))).	chrX:153588123-153588341(-)$1	1	12	38	22.3409
.((((((............)))))).	chr1:38061369-38061636(-)$1	1	233	259	20.4112
((................))))))).	chrX:153582748-153582951(-)$1	1	49	75	19.4392
((((((............))))))..	chr9:95021131-95021374(-)$1	1	13	39	22.2692
((((..............))))))))	chr1:19438961-19439183(-)$1	1	92	118	21.5300
((((((..............))))))	chr11:9406096-9406364(+)$1	1	88	114	22.5821
(.(((((...........))))).))	chr5:71403198-71403503(+)$1	1	98	124	21.8113
(..((((................)))	chr9:35731992-35732210(-)$1	1	23	49	18.5331
.(((((.............)))))..	chr17:57741140-57741348(+)$1	1	1	27	19.4276
.(((..............)))..)).	chrX:153581898-153582122(-)$1	1	140	166	20.8484
(.(.(((............)))))))	chr6:160210422-160210684(-)$1	1	49	75	23.1163
(((.(((...........))).))))	chr12:57039591-57039849(-)$1	1	180	206	23.1230
((((((...............)))))	chr2:178087969-178088233(+)$1	1	147	173	17.2344
.((((((...........)))))).(	chr4:2896297-2896561(+)$1	1	20	46	20.4043
.((((((...........))))))..	chr17:40061720-40061970(-)$1	1	220	246	19.5141
.((((.(...........))))))))	chrX:153592798-153593021(-)$1	1	191	217	22.6815
)).(((............))).((((	chr7:30671820-30672070(+)$1	1	164	190	21.1926
((..(((..........)))....))	chr6:90529196-90529522(-)$1	1	238	264	16.6269
...((((............))))...	chr7:99697185-99697437(-)$1	1	8	34	22.3559
(((((.............)))...))	chr3:33840062-33840330(+)$1	1	173	199	22.3977
((..(((...........)))..)))	chr17:26988808-26989095(-)$1	1	124	150	23.8458
(((((((...........))))))..	chrX:53440153-53440429(-)$1	1	161	187	22.1292
.(((((............))).))..	chr6:31763254-31763509(-)$1	1	167	193	19.9487
.(((.((...........)).)))..	chrX:153583102-153583328(-)$1	1	15	41	22.2767
((((.((.............))))))	chr19:49589584-49589851(+)$1	1	34	60	20.8314
((.(((............)))..)))	chrX:153581374-153581613(-)$1	1	37	63	23.7309
((((.(((..........))).))))	chr11:46867671-46867932(-)$1	1	141	167	17.1289
((((((..............))))))	chr10:43883146-43883439(-)$1	1	185	211	22.5821
((((.((...........)).))))(	chr3:184045635-184045880(+)$1	1	171	197	21.4572
(((((((...........))))))).	chr21:16436963-16437408(-)$1	1	62	88	23.2321
((((((..............))))))	chr2:216973976-216974244(+)$1	1	81	107	22.5821

#PSSM
g : 0.16	f : 0.13	: : 0.10	d : 0.10	e : 0.08	c : 0.08	h : 0.06	[ : 0.06	i : 0.06	= : 0.05	" : 0.03	$ : 0.01	b : 0.01	
f : 0.20	g : 0.15	c : 0.13	e : 0.10	d : 0.08	h : 0.06	i : 0.06	= : 0.05	" : 0.03	[ : 0.03	: : 0.01	a : 0.01	! : 0.01	b : 0.01	
! : 0.15	g : 0.13	f : 0.13	[ : 0.10	e : 0.08	c : 0.08	i : 0.06	d : 0.06	h : 0.05	= : 0.03	y : 0.01	a : 0.01	: : 0.01	" : 0.01	b : 0.01	
d : 0.16	c : 0.15	! : 0.13	g : 0.13	f : 0.13	e : 0.08	h : 0.05	i : 0.05	= : 0.03	[ : 0.03	y : 0.01	
c : 0.27	f : 0.13	d : 0.13	g : 0.10	e : 0.08	[ : 0.08	h : 0.05	w : 0.05	= : 0.03	b : 0.01	y : 0.01	i : 0.01	
c : 0.28	f : 0.11	d : 0.11	g : 0.10	b : 0.08	e : 0.06	h : 0.05	v : 0.05	w : 0.05	= : 0.01	y : 0.01	i : 0.01	[ : 0.01	
c : 0.20	u : 0.11	w : 0.11	v : 0.11	d : 0.11	b : 0.06	f : 0.06	e : 0.05	g : 0.05	= : 0.01	h : 0.01	y : 0.01	x : 0.01	a : 0.01	
t : 0.33	u : 0.20	v : 0.18	w : 0.16	c : 0.03	y : 0.03	x : 0.01	s : 0.01	
t : 0.33	u : 0.20	v : 0.18	w : 0.16	s : 0.05	y : 0.03	x : 0.01	
t : 0.33	u : 0.20	v : 0.18	w : 0.16	s : 0.05	y : 0.03	x : 0.01	
t : 0.33	u : 0.20	v : 0.18	w : 0.16	s : 0.05	y : 0.03	x : 0.01	
t : 0.33	u : 0.20	v : 0.18	w : 0.16	s : 0.05	y : 0.03	x : 0.01	
t : 0.33	u : 0.20	v : 0.18	w : 0.16	s : 0.05	y : 0.03	x : 0.01	
t : 0.33	u : 0.20	v : 0.18	w : 0.16	s : 0.05	y : 0.03	x : 0.01	
t : 0.33	u : 0.20	v : 0.18	w : 0.16	s : 0.05	y : 0.03	x : 0.01	
t : 0.33	u : 0.20	v : 0.18	w : 0.16	s : 0.05	y : 0.03	x : 0.01	
t : 0.33	u : 0.20	v : 0.18	w : 0.16	s : 0.05	y : 0.03	x : 0.01	
t : 0.33	u : 0.20	v : 0.18	w : 0.16	s : 0.03	y : 0.03	x : 0.01	c : 0.01	
c : 0.27	v : 0.13	w : 0.11	u : 0.08	e : 0.06	f : 0.06	g : 0.05	b : 0.05	= : 0.03	h : 0.03	d : 0.01	i : 0.01	y : 0.01	x : 0.01	a : 0.01	
c : 0.28	w : 0.11	f : 0.10	e : 0.08	g : 0.06	v : 0.06	b : 0.06	d : 0.06	h : 0.05	= : 0.03	i : 0.01	y : 0.01	x : 0.01	
c : 0.28	g : 0.11	f : 0.11	d : 0.10	e : 0.08	w : 0.05	h : 0.05	] : 0.05	= : 0.03	b : 0.03	i : 0.01	y : 0.01	x : 0.01	4 : 0.01	
f : 0.15	] : 0.13	d : 0.13	g : 0.11	e : 0.08	c : 0.08	2 : 0.08	h : 0.05	= : 0.03	i : 0.03	y : 0.01	: : 0.01	4 : 0.01	3 : 0.01	b : 0.01	
d : 0.18	g : 0.15	f : 0.15	e : 0.10	c : 0.08	2 : 0.08	i : 0.06	h : 0.05	= : 0.03	y : 0.01	a : 0.01	4 : 0.01	3 : 0.01	b : 0.01	
g : 0.16	d : 0.16	f : 0.15	c : 0.10	= : 0.06	i : 0.06	b : 0.05	e : 0.05	h : 0.05	] : 0.03	3 : 0.03	a : 0.01	2 : 0.01	4 : 0.01	
g : 0.16	d : 0.15	f : 0.10	= : 0.08	h : 0.06	c : 0.06	i : 0.06	: : 0.06	3 : 0.05	2 : 0.05	b : 0.03	e : 0.03	] : 0.03	4 : 0.01	
d : 0.13	g : 0.11	= : 0.08	: : 0.08	c : 0.08	e : 0.06	h : 0.06	f : 0.06	i : 0.06	2 : 0.06	3 : 0.05	] : 0.05	4 : 0.03	! : 0.01	

#score	1274.3513579629825
#seq	59
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_UTR_m1_run1.txt

#BEAR
cc####cccccc[eeeeemmmmeeeee]ccc]ccc4444c	chr2:242255437-242255707(+)$1	270	187	227	11.6885
e####==========cccannnnna]ccc]==========	chr10:70660988-70661268(+)$1	280	109	149	16.9329
ff####accc[ffffffcccmmmmccc4444ffffff]cc	chrX:152953725-152953974(+)$1	249	162	202	12.9495
!!ccc[ccc[eeeee[cccmmmmccceeeeeccc333ccc	chr3:150264007-150264257(-)$1	250	115	155	13.1464
dd[a####ggggggga[bboooooobb22a]gggggggad	chr20:30327105-30327372(+)$1	267	56	96	13.8492
[ccc[dddd!!ggggggg[ammmma]ggggggg333dddd	chr1:114472263-114472513(+)$1	250	145	185	12.9491
ffff$$$$$eeeee!!cccnnnnnccc4444eeeeeffff	chr12:54063589-54063833(-)$1	244	109	149	13.0499
e[ggggggg!!ccc!!cccnnnnnccc22cccggggggg]	chr4:10118212-10118465(-)$1	253	90	130	16.7137
ciiiiiiiii!!a!!ddddnnnnndddd22a]iiiiiiii	chr19:1104308-1104627(+)$1	319	245	285	14.9294
gggggg[ccc[ccc!!cccmmmmccc333ccc]cccgggg	chr15:82335837-82336110(-)$1	273	11	51	15.2769
cc::==========!!accclllccc]a22==========	chr11:64014205-64014498(-)$1	293	180	220	13.8945
fffffccc"""a!!ddddnnnnndddd22a4444ccc]ff	chr1:155532300-155532615(-)$1	315	80	120	13.3552
####ccc[cccccc"""aooooooa333ccc]ccc]ccc4	chr5:179921441-179921709(+)$1	268	144	184	16.3984
cc[dddd[ccc!!dddd[annnnna]dddd22ccc]dddd	chr1:153949971-153950215(-)$1	244	187	227	13.1130
"""ccc[ccc[a[bb[aooooooabb]a]cccccc4444e	chr12:46766251-46766507(-)$1	256	155	195	14.3652
a[affffff[iiiiiiiiiammmma]iiiiiiiii]ffff	chr22:41488224-41488488(+)$1	264	16	56	12.6704
====!!===========[ccclllccc===========22	chr10:126107340-126107580(-)$1	240	157	197	15.2938
[eeeee[bb[ccc"""cccmmmmccc333ccc]bb]eeee	chr9:130953670-130953933(-)$1	263	124	164	14.0796
e[ccc[dddd!!ccc!!cccmmmmccc4444ccc22dddd	chr5:10250323-10250671(+)$1	348	278	318	13.5458
:eeeee[bb[ccc"""cccnnnnnccc4444ccc22bb33	chr11:33743840-33744110(-)$1	270	216	256	14.6195
eee$$$$$a[bb[a[cccooooooccca]bba4444eeee	chr2:38829786-38830061(-)$1	275	225	265	13.6888
dd[eeeeeccc####cccccclllccc]ccc4444ccc22	chr4:79697534-79697795(+)$1	261	149	189	13.6394
cc[ccc$$$$$gggggggnnnnnggggggg22ccc]ccc2	chr6:163835916-163836190(+)$1	274	107	147	13.4886
[bb[ffffff!!ccc!!cccmmmmccc22ccc333fffff	chr17:27717813-27718074(+)$1	261	45	85	13.3733
eeeeeiiiiiiiii!!cccnnnnnccc22iiiiiiiii55	chr5:176738752-176739028(-)$1	276	97	137	14.9439
"hhhhhhhh[a[a[a[cccnnnnnccc]a]a]a]hhhhhh	chr14:100704554-100704856(-)$1	302	149	189	14.2202
dddd!!ccc[gggggggrrrrrrrrrggggggg333ccc2	chr19:50985397-50985679(+)$1	282	23	63	12.3054
[eeeee[a"""a[ffffffnnnnnffffff]a333aeeee	chr22:24953518-24953788(+)$1	270	181	221	13.9714
dddd####dddd[a[a[bbnnnnnbb22a]a]dddd22dd	chr1:110527470-110527848(+)$1	378	57	97	12.5110
dd[a[eeeee"""ffffffnnnnnffffff333eeeee]a	chr5:218342-218745(+)$1	403	306	346	13.4636
eee####ccc!!ccc!!bbmmmmbb333ccc]ccc22eee	chr10:106014819-106015050(+)$1	231	189	229	13.8167
[ccc!!ccc[bb!!ccc[aooooooa]ccc333bbccc44	chr1:68150826-68151072(+)$1	246	136	176	15.3181
f[bb[eeeee"""a[ddddnnnnndddd]a333eeeee]b	chr2:231577480-231577769(+)$1	289	99	139	13.3262
!!eeeee[a[bb[a!!cccnnnnnccc22a]bb]a]eeee	chr7:150652524-150652823(-)$1	299	223	263	15.6229
!!dddd[bb!!a"""ddddmmmmdddd333a22bb]dddd	chr11:46403154-46403400(+)$1	246	24	64	12.5728
a!!dddd[bb!!bb"""ccclllccc333bb22bbdddd2	chr12:6643875-6644077(+)$1	202	116	156	12.9538
####ggggggg[accc[bbmmmmbb]ccc]a]ggggggg2	chr8:144815720-144815984(-)$1	264	31	71	13.0758
[ccc[ccc[a[a[ffffffmmmmffffff]a]accc]ccc	chr10:75012169-75012433(-)$1	264	148	188	12.9673
ccc[ccc[ccc[ccc[annnnna]ccc]ccc]ccc]ccc:	chr22:22221731-22221959(-)$1	228	5	45	13.2699
##bb[============oooooo============333bb	chr12:110719298-110719589(+)$1	291	24	64	14.7634
:iiiiiiiii"""bbcccooooooccc]bb333iiiiiii	chr2:242254698-242254980(-)$1	282	208	248	14.7203
bb[ggggggg[a[ffffffnnnnnffffff]a]ggggggg	chr2:61404547-61404801(+)$1	254	42	82	13.4470
[a[a!!ffffff[a!!cccooooooccca]ffffff22a]	chr8:42911375-42911654(+)$1	279	134	174	14.0665
d!!bb[ccc[ffffff[bbnnnnnbb]ffffff]ccc]bb	chr11:64851380-64851625(-)$1	245	105	145	11.9889
ffccc[bb!!iiiiiiiiinnnnniiiiiiiiibb]cccb	chr15:69112999-69113242(-)$1	243	82	122	14.2754
$$$a!!a[==========lll==========]a22accc]	chr2:236403029-236403350(+)$1	321	15	55	14.2198
ffccc[bb!!bb[bb"""annnnna333bb]bb22bbccc	chr2:44222895-44223160(-)$1	265	169	209	12.8879
::gggggggccc!!bbcccnnnnnccc22bb22ccc]ggg	chr2:176046280-176046531(-)$1	251	192	232	13.4621
ggggccc[ccc"""a"""cccmmmmccc]a22ccc]ccc]	chr19:49588745-49588965(+)$1	220	104	144	13.3561
[eeeee[bb####ccccccnnnnnccc]ccc333bb]eee	chr2:71221729-71222057(-)$1	328	274	314	15.4618
ccbb!!cccccc[bb[cccnnnnnccc22bb]ccc]ccc2	chr12:131357008-131357255(+)$1	247	125	165	16.4444
gggccceeeeea!!a[cccmmmmccc]a22a]eeeee333	chr19:56599223-56599464(-)$1	241	110	150	13.3820
dd"""ffffff[ccc"""aooooooa333ccc]ffffff2	chr22:23522681-23522953(+)$1	272	19	59	14.0786
ee####a!!ccc!!eeeeemmmmeeeee333ccc22a444	chr12:72148601-72148959(+)$1	358	270	310	12.9890
[ccc[ccc[gggggggccclllccc]gggggggccc]ccc	chr11:95522668-95522945(-)$1	277	135	175	13.8223
dd####a!!a[gggggggooooooggggggg]a]a22ddd	chr19:40791084-40791368(-)$1	284	222	262	14.3482

#otherMatches

#Seq PSSM
AGGCCCGGGCGCGGGAGUGGGGAUUCCGGUGACCCCUUGU	chr2:242255437-242255707(+)$1	270	187	227	11.6885
GGUUGUGGCCACUGUGCCCGGAGGGAGGCGGCGGUGGCCA	chr10:70660988-70661268(+)$1	280	109	149	16.9329
cgucccccggcccggccgccccccggcccccggccggccc	chrX:152953725-152953974(+)$1	249	162	202	12.9495
CUGCCCCGCUCGGUCAGUCAGUCGGCGGCCGGCGCCCGGC	chr3:150264007-150264257(-)$1	250	115	155	13.1464
GAAGAAAAGAGGGAGCAGCUAGGGCGCGGGUCUCCCUCCU	chr20:30327105-30327372(+)$1	267	56	96	13.8492
gggcgcggggacggcuccggggggcgggggccggggcccg	chr1:114472263-114472513(+)$1	250	145	185	12.9491
CACCUCACAGCUGCUGAGCCGUCCGCUAUCUGCAGUGGUG	chr12:54063589-54063833(-)$1	244	109	149	13.0499
GCUCGGCCUCGGCGAGGUGUAAUUCGCAGCGCGGGCCGGC	chr4:10118212-10118465(-)$1	253	90	130	16.7137
UGGGGGCGCGGAGGGCUGGAAAUCCCGGAUCAcgcgcccc	chr19:1104308-1104627(+)$1	319	245	285	14.9294
CUGGGGCACCACUUAUCUGGGCCCAGUUCGAGCGGUCCCC	chr15:82335837-82336110(-)$1	273	11	51	15.2769
CCAAGCCCGGGGGCUCCGCAUGCUGCAGCUgcccccgggc	chr11:64014205-64014498(-)$1	293	180	220	13.8945
CAGGGCCUGAGGGGUAGUGAGGGACUGGACGAGGGGGUUC	chr1:155532300-155532615(-)$1	315	80	120	13.3552
AAGCAGUGGCUCUCGGAGGGGGAACAAAGAGCAGCGACUA	chr5:179921441-179921709(+)$1	268	144	184	16.3984
GGAGCGGAGGUGAGCGGGCGCUAGGGCCGCGAGCCCCCGC	chr1:153949971-153950215(-)$1	244	187	227	13.1130
AUUUGUAUUUGACUGAGAGAAACCCACUGAAGACGUCUGC	chr12:46766251-46766507(-)$1	256	155	195	14.3652
cgccgccggagcggggccuccucggugggcuccgcgucgg	chr22:41488224-41488488(+)$1	264	16	56	12.6704
UGUCCUGGGGCUCUGGUUCGGGCCCUGGCCGGGGUUCCCU	chr10:126107340-126107580(-)$1	240	157	197	15.2938
gagcccgcgggccggagccgcccggccgaggcgugggggc	chr9:130953670-130953933(-)$1	263	124	164	14.0796
CCGAGGCCGUGGCUCUGCGCCUGCGCGAGUUGAGGAGCGG	chr5:10250323-10250671(+)$1	348	278	318	13.5458
AGGCUGCCUUGGCCAUGAACUCCCUUCUUAAGCCUCAGUU	chr11:33743840-33744110(-)$1	270	216	256	14.6195
CGGCAUCCGAGGCGCGCGCCCCACCGCCACCCCCACCCGC	chr2:38829786-38830061(-)$1	275	225	265	13.6888
UCGCCGGCGGGACCAUGAAGAAGUUCUCUCGGAUGCCCAA	chr4:79697534-79697795(+)$1	261	149	189	13.6394
CGGGCGGAAAGUGCCUgcggggggcgggcgagcgcgcggu	chr6:163835916-163836190(+)$1	274	107	147	13.4886
cgccgccgccgccccUUGUUGCAGAGCUUGGGCUGGGCGG	chr17:27717813-27718074(+)$1	261	45	85	13.3733
cUGUGUUUGUUGCACCGUGUCAGUUACUUUGUAACAAAAG	chr5:176738752-176739028(-)$1	276	97	137	14.9439
gggggccgcgcggggagcggcuggcgcgugcggggcggcc	chr14:100704554-100704856(-)$1	302	149	189	14.2202
CCCGUCGUCCUGUUCCUCAUGAUGUCAGGAGCGCCAGACA	chr19:50985397-50985679(+)$1	282	23	63	12.3054
UGUGAGACGAACACCGGUGAGGUAUAUCGGGGGAAGCUCA	chr22:24953518-24953788(+)$1	270	181	221	13.9714
CCUCAGAAGCCGACGCAGCUCGACGCAGgggccggcagga	chr1:110527470-110527848(+)$1	378	57	97	12.5110
CCGGGAUCGGGAAGGGGCUGAGAGAGCCCUGGGCCGGUGC	chr5:218342-218745(+)$1	403	306	346	13.4636
CCUGAAGGCCAAGGGAAUCAGGUGGGCACCCAGGCGGGGG	chr10:106014819-106015050(+)$1	231	189	229	13.8167
GAGCGAGCAAGCAAGGCGGGAGGGGUGGCCGGAGCUGCGG	chr1:68150826-68151072(+)$1	246	136	176	15.3181
CUCGGGCCGCAAGCGGGGCGAGGGGUUCGGGGAGCGGCGC	chr2:231577480-231577769(+)$1	289	99	139	13.3262
AAGUCCUCCAUGGCGGCCCCAGCCGGGAAGGCGAGCAGGA	chr7:150652524-150652823(-)$1	299	223	263	15.6229
GGGGGUGGGGAGAGGGGGCGGGGGCCCAUGUGACCGGCUC	chr11:46403154-46403400(+)$1	246	24	64	12.5728
AGACACCAUGGGGAAGGUGAAGGUCGGAGUCAACGGGUGA	chr12:6643875-6644077(+)$1	202	116	156	12.9538
AGGGAGUGGCUGCCGGACCGACCGGACCGCGAGGCCGCUG	chr8:144815720-144815984(-)$1	264	31	71	13.0758
GUGCGGGUAGCGGGGCUCUCCGAGGAGCCGCACGCCGGCG	chr10:75012169-75012433(-)$1	264	148	188	12.9673
gcccgccggcccgcccgucagucugGCAGGCAGGCAGGCA	chr22:22221731-22221959(-)$1	228	5	45	13.2699
GGGAGGCCCUCCCUUCUGGCGAGGGGAGGGAGGGUGGGUC	chr12:110719298-110719589(+)$1	291	24	64	14.7634
ACUGGGCGGGGGACGGCGAGCGGCCGCGCGAAACUCGUCU	chr2:242254698-242254980(-)$1	282	208	248	14.7203
CCCGGGGCUCGGCGGCCGGAAACGCUGGCUUCGGAGCCUU	chr2:61404547-61404801(+)$1	254	42	82	13.4470
CGGGGAGGCUGCGCAAGGGGGCGAGCCCGGGCAGCCGGCG	chr8:42911375-42911654(+)$1	279	134	174	14.0665
CGAGUGGCCUUCCCGGUUggcgcgcgcccggggcggcggc	chr11:64851380-64851625(-)$1	245	105	145	11.9889
GCCGUGGGUUCGGGGUUUAUUGAUUGAAUUCCGCCGGCGC	chr15:69112999-69113242(-)$1	243	82	122	14.2754
cccgccgcggcgcgcuccaugggggcgcgcuccccccggg	chr2:236403029-236403350(+)$1	321	15	55	14.2198
CCGGCUGCAUGCCGCCUCCUAUCUGCCCGCCGCUCGCGCC	chr2:44222895-44223160(-)$1	265	169	209	12.8879
GCGCCCAGUAGGGACCCAUUCAUUGUGCCGGCGCCUCACU	chr2:176046280-176046531(-)$1	251	192	232	13.4621
CGCGAGCCUCCGGACAGACGCCAGAGCGAGGAGGGCGCUA	chr19:49588745-49588965(+)$1	220	104	144	13.3561
cgccccggcAUCGGUGCUCGUUGGGGGUCGCAUCGCGGGG	chr2:71221729-71222057(-)$1	328	274	314	15.4618
CCGCGAUGGCUGCGCAGGGAGAGCCCCAGGUCCAGUUCAA	chr12:131357008-131357255(+)$1	247	125	165	16.4444
cUCGGGCUUGGCGGGAGCGACGACGUGCAAGACCAAGAGA	chr19:56599223-56599464(-)$1	241	110	150	13.3820
GUGCGGGCCGGGCGGGAGUGCGGCGAGAGCCGGCUGGCUG	chr22:23522681-23522953(+)$1	272	19	59	14.0786
GCGCGACACUCGGGCUCGGGCGGCCGGGAAGCGACGGGAU	chr12:72148601-72148959(+)$1	358	270	310	12.9890
uggcgucguccgcggggcccugggcucucgcggcgaggcc	chr11:95522668-95522945(-)$1	277	135	175	13.8223
GCGUGGCGAUGGGCGGGGGUAGAGCCCCGCCGGAGAGGCU	chr19:40791084-40791368(-)$1	284	222	262	14.3482

#DB
((....((((((.(((((....))))).))).)))....)	chr2:242255437-242255707(+)$1	1	187	227	11.6885
(....((((((((((((((.....).))).))))))))))	chr10:70660988-70661268(+)$1	1	109	149	16.9329
((....((((.(((((((((....)))....)))))).))	chrX:152953725-152953974(+)$1	1	162	202	12.9495
..(((.(((.(((((.(((....)))))))))))...)))	chr3:150264007-150264257(-)$1	1	115	155	13.1464
((.(....((((((((.((......))..).)))))))))	chr20:30327105-30327372(+)$1	1	56	96	13.8492
.(((.((((..(((((((.(....).)))))))...))))	chr1:114472263-114472513(+)$1	1	145	185	12.9491
((((.....(((((..(((.....)))....)))))))))	chr12:54063589-54063833(-)$1	1	109	149	13.0499
(.(((((((..(((..(((.....)))..)))))))))).	chr4:10118212-10118465(-)$1	1	90	130	16.7137
)(((((((((..(..((((.....))))..).))))))))	chr19:1104308-1104627(+)$1	1	245	285	14.9294
((((((.(((.(((..(((....)))...))).)))))))	chr15:82335837-82336110(-)$1	1	11	51	15.2769
))..((((((((((..((((...))).)..))))))))))	chr11:64014205-64014498(-)$1	1	180	220	13.8945
((((((((...(..((((.....))))..)....))).))	chr1:155532300-155532615(-)$1	1	80	120	13.3552
....(((.((((((...(......)...))).))).))).	chr5:179921441-179921709(+)$1	1	144	184	16.3984
((.((((.(((..((((.(.....).))))..))).))))	chr1:153949971-153950215(-)$1	1	187	227	13.1130
...(((.(((.(.((.(......))).).))))))....)	chr12:46766251-46766507(-)$1	1	155	195	14.3652
(.(((((((.((((((((((....).))))))))).))))	chr22:41488224-41488488(+)$1	1	16	56	12.6704
((((..(((((((((((.(((...))))))))))))))..	chr10:126107340-126107580(-)$1	1	157	197	15.2938
.(((((.((.(((...(((....)))...))).)).))))	chr9:130953670-130953933(-)$1	1	124	164	14.0796
(.(((.((((..(((..(((....)))....)))..))))	chr5:10250323-10250671(+)$1	1	278	318	13.5458
.(((((.((.(((...(((.....)))....)))..))..	chr11:33743840-33744110(-)$1	1	216	256	14.6195
(((.....(.((.(.(((......)))).)))....))))	chr2:38829786-38830061(-)$1	1	225	265	13.6888
((.((((((((....((((((...))).)))....)))..	chr4:79697534-79697795(+)$1	1	149	189	13.6394
((.(((.....(((((((.....)))))))..))).))).	chr6:163835916-163836190(+)$1	1	107	147	13.4886
.((.((((((..(((..(((....)))..)))...)))))	chr17:27717813-27718074(+)$1	1	45	85	13.3733
((((((((((((((..(((.....)))..)))))))))..	chr5:176738752-176739028(-)$1	1	97	137	14.9439
.((((((((.(.(.(.(((.....))).).).).))))))	chr14:100704554-100704856(-)$1	1	149	189	14.2202
((((..(((.(((((((.........)))))))...))).	chr19:50985397-50985679(+)$1	1	23	63	12.3054
.(((((.(...(.((((((.....)))))).)...)))))	chr22:24953518-24953788(+)$1	1	181	221	13.9714
((((....((((.(.(.((.....))..).).))))..))	chr1:110527470-110527848(+)$1	1	57	97	12.5110
((.(.(((((...((((((.....))))))...))))).)	chr5:218342-218745(+)$1	1	306	346	13.4636
(((....(((..(((..((....))...))).)))..)))	chr10:106014819-106015050(+)$1	1	189	229	13.8167
.(((..(((.((..(((.(......).)))...)))))..	chr1:68150826-68151072(+)$1	1	136	176	15.3181
(.((.(((((...(.((((.....)))).)...))))).)	chr2:231577480-231577769(+)$1	1	99	139	13.3262
..(((((.(.((.(..(((.....)))..).)).).))))	chr7:150652524-150652823(-)$1	1	223	263	15.6229
..((((.((..(...((((....))))...)..)).))))	chr11:46403154-46403400(+)$1	1	24	64	12.5728
(..((((.((..((...(((...)))...))..)))))).	chr12:6643875-6644077(+)$1	1	116	156	12.9538
....(((((((.((((.((....)).))).).))))))).	chr8:144815720-144815984(-)$1	1	31	71	13.0758
.(((.(((.(.(.((((((....)))))).).)))).)))	chr10:75012169-75012433(-)$1	1	148	188	12.9673
(((.(((.(((.(((.(.....).))).))).))).))).	chr22:22221731-22221959(-)$1	1	5	45	13.2699
..((.((((((((((((......))))))))))))...))	chr12:110719298-110719589(+)$1	1	24	64	14.7634
.(((((((((...(((((......))).))...)))))))	chr2:242254698-242254980(-)$1	1	208	248	14.7203
((.(((((((.(.((((((.....)))))).).)))))))	chr2:61404547-61404801(+)$1	1	42	82	13.4470
.(.(..((((((.(..(((......)))).))))))..).	chr8:42911375-42911654(+)$1	1	134	174	14.0665
(..((.(((.((((((.((.....)).)))))).))).))	chr11:64851380-64851625(-)$1	1	105	145	11.9889
))(((.((..(((((((((.....))))))))))).)))(	chr15:69112999-69113242(-)$1	1	82	122	14.2754
...(..(.((((((((((...)))))))))).)..)))).	chr2:236403029-236403350(+)$1	1	15	55	14.2198
(((((.((..((.((...(.....)...)).))..)))))	chr2:44222895-44223160(-)$1	1	169	209	12.8879
..((((((((((..(((((.....)))..))..))).)))	chr2:176046280-176046531(-)$1	1	192	232	13.4621
(((((((.(((...(...(((....))).)..))).))).	chr19:49588745-49588965(+)$1	1	104	144	13.3561
.(((((.((....((((((.....))).)))...)).)))	chr2:71221729-71222057(-)$1	1	274	314	15.4618
((((..((((((.((.(((.....)))..)).))).))).	chr12:131357008-131357255(+)$1	1	125	165	16.4444
)))(((((((((..(.(((....))).)..).)))))...	chr19:56599223-56599464(-)$1	1	110	150	13.3820
((...((((((.(((...(......)...))).)))))).	chr22:23522681-23522953(+)$1	1	19	59	14.0786
((....(..(((..(((((....)))))...)))..)...	chr12:72148601-72148959(+)$1	1	270	310	12.9890
.(((.(((.((((((((((...))).)))))))))).)))	chr11:95522668-95522945(-)$1	1	135	175	13.8223
((....(..(.(((((((......))))))).).)..)))	chr19:40791084-40791368(-)$1	1	222	262	14.3482

#PSSM
[ : 0.16	d : 0.14	c : 0.12	e : 0.12	f : 0.10	! : 0.05	g : 0.05	# : 0.05	: : 0.05	" : 0.03	a : 0.03	= : 0.01	b : 0.01	$ : 0.01	
c : 0.17	e : 0.14	d : 0.12	f : 0.08	! : 0.08	# : 0.07	[ : 0.07	g : 0.05	i : 0.03	b : 0.03	" : 0.01	= : 0.01	h : 0.01	a : 0.01	$ : 0.01	: : 0.01	
c : 0.16	e : 0.14	# : 0.12	[ : 0.12	g : 0.08	b : 0.07	d : 0.05	f : 0.03	i : 0.03	" : 0.03	! : 0.03	: : 0.01	a : 0.01	= : 0.01	h : 0.01	$ : 0.01	
c : 0.19	# : 0.14	e : 0.12	g : 0.08	d : 0.08	a : 0.07	b : 0.07	f : 0.05	i : 0.03	[ : 0.03	: : 0.01	= : 0.01	$ : 0.01	h : 0.01	" : 0.01	
c : 0.17	# : 0.14	e : 0.12	[ : 0.10	! : 0.10	g : 0.08	f : 0.05	d : 0.05	$ : 0.03	i : 0.03	= : 0.01	h : 0.01	b : 0.01	" : 0.01	
c : 0.16	e : 0.14	# : 0.12	! : 0.10	[ : 0.08	g : 0.08	d : 0.07	= : 0.05	i : 0.05	f : 0.05	$ : 0.03	h : 0.01	
c : 0.21	[ : 0.12	e : 0.08	= : 0.07	a : 0.07	d : 0.07	g : 0.07	f : 0.07	# : 0.05	$ : 0.05	i : 0.05	b : 0.03	h : 0.01	
c : 0.23	[ : 0.12	b : 0.10	= : 0.07	g : 0.07	f : 0.07	e : 0.07	$ : 0.05	i : 0.05	# : 0.03	d : 0.03	! : 0.03	h : 0.01	a : 0.01	
c : 0.26	= : 0.08	g : 0.08	b : 0.08	f : 0.07	! : 0.07	d : 0.05	i : 0.05	e : 0.05	$ : 0.03	" : 0.03	a : 0.03	[ : 0.03	h : 0.01	
c : 0.23	[ : 0.17	= : 0.08	! : 0.08	g : 0.07	e : 0.07	i : 0.05	f : 0.05	" : 0.03	d : 0.03	a : 0.03	$ : 0.01	b : 0.01	# : 0.01	
c : 0.19	! : 0.14	[ : 0.10	= : 0.08	" : 0.08	g : 0.07	b : 0.07	e : 0.05	i : 0.05	f : 0.05	$ : 0.01	a : 0.01	d : 0.01	# : 0.01	
c : 0.16	a : 0.12	g : 0.10	! : 0.10	= : 0.08	b : 0.07	[ : 0.07	" : 0.07	f : 0.05	i : 0.05	e : 0.03	# : 0.03	d : 0.01	
[ : 0.19	c : 0.17	g : 0.10	! : 0.10	= : 0.08	" : 0.08	a : 0.05	i : 0.05	f : 0.03	e : 0.03	# : 0.03	b : 0.01	
c : 0.17	f : 0.10	g : 0.10	! : 0.10	= : 0.08	b : 0.08	a : 0.08	" : 0.07	e : 0.05	i : 0.05	d : 0.01	# : 0.01	[ : 0.01	
! : 0.14	c : 0.14	f : 0.10	g : 0.10	" : 0.08	b : 0.08	= : 0.07	e : 0.05	[ : 0.05	a : 0.05	d : 0.03	i : 0.03	# : 0.01	
! : 0.17	c : 0.12	" : 0.12	f : 0.10	[ : 0.10	g : 0.08	d : 0.08	= : 0.05	e : 0.03	a : 0.03	i : 0.03	b : 0.01	
c : 0.35	f : 0.08	d : 0.08	" : 0.08	[ : 0.07	g : 0.07	a : 0.05	= : 0.05	! : 0.05	e : 0.03	i : 0.03	
c : 0.42	b : 0.08	d : 0.07	f : 0.07	g : 0.05	[ : 0.05	" : 0.05	e : 0.03	o : 0.03	i : 0.03	a : 0.01	r : 0.01	n : 0.01	= : 0.01	
c : 0.41	o : 0.10	a : 0.08	b : 0.08	f : 0.07	d : 0.05	n : 0.05	i : 0.03	m : 0.01	[ : 0.01	r : 0.01	l : 0.01	e : 0.01	
n : 0.41	m : 0.17	o : 0.17	c : 0.14	a : 0.03	l : 0.03	r : 0.01	
n : 0.41	m : 0.26	o : 0.17	l : 0.07	c : 0.05	r : 0.01	
n : 0.41	m : 0.28	o : 0.17	l : 0.08	r : 0.01	= : 0.01	
n : 0.39	m : 0.26	o : 0.17	l : 0.07	e : 0.01	r : 0.01	a : 0.01	= : 0.01	c : 0.01	
n : 0.35	o : 0.14	c : 0.12	m : 0.10	e : 0.03	d : 0.03	l : 0.03	b : 0.03	= : 0.03	a : 0.01	g : 0.01	r : 0.01	f : 0.01	] : 0.01	
c : 0.42	a : 0.10	b : 0.08	o : 0.07	d : 0.07	f : 0.07	e : 0.03	g : 0.03	= : 0.03	r : 0.01	i : 0.01	m : 0.01	
c : 0.44	] : 0.10	b : 0.07	d : 0.07	f : 0.07	3 : 0.05	e : 0.03	g : 0.03	a : 0.03	= : 0.03	r : 0.01	i : 0.01	
c : 0.37	3 : 0.12	g : 0.08	d : 0.08	] : 0.08	f : 0.07	e : 0.05	i : 0.03	= : 0.03	b : 0.01	2 : 0.01	
2 : 0.16	3 : 0.14	] : 0.10	c : 0.08	g : 0.08	f : 0.08	4 : 0.07	a : 0.07	d : 0.05	= : 0.05	e : 0.03	i : 0.03	
2 : 0.19	c : 0.16	3 : 0.10	g : 0.08	f : 0.08	4 : 0.07	] : 0.07	= : 0.05	a : 0.05	i : 0.03	b : 0.03	e : 0.01	d : 0.01	
c : 0.23	] : 0.10	b : 0.10	a : 0.08	g : 0.08	4 : 0.07	f : 0.07	2 : 0.05	i : 0.05	= : 0.05	3 : 0.03	e : 0.01	d : 0.01	
c : 0.21	a : 0.12	= : 0.08	4 : 0.08	] : 0.08	3 : 0.08	g : 0.07	b : 0.07	2 : 0.05	i : 0.05	f : 0.03	e : 0.01	
] : 0.23	c : 0.17	2 : 0.10	3 : 0.08	= : 0.07	g : 0.07	f : 0.05	i : 0.05	a : 0.05	4 : 0.03	b : 0.03	e : 0.01	
c : 0.23	3 : 0.12	g : 0.10	= : 0.07	i : 0.07	] : 0.07	a : 0.07	f : 0.05	4 : 0.05	2 : 0.05	e : 0.03	b : 0.03	d : 0.01	
c : 0.30	3 : 0.08	b : 0.08	= : 0.07	g : 0.07	e : 0.07	i : 0.07	] : 0.07	f : 0.05	4 : 0.05	2 : 0.03	d : 0.01	
c : 0.26	b : 0.10	3 : 0.08	2 : 0.08	= : 0.07	g : 0.07	e : 0.07	i : 0.07	f : 0.05	4 : 0.03	a : 0.03	h : 0.01	d : 0.01	
] : 0.19	c : 0.14	2 : 0.08	f : 0.07	3 : 0.07	g : 0.07	e : 0.07	4 : 0.05	= : 0.05	i : 0.05	a : 0.03	d : 0.03	b : 0.03	h : 0.01	
c : 0.21	e : 0.12	f : 0.08	g : 0.08	d : 0.08	2 : 0.07	] : 0.07	= : 0.05	i : 0.05	4 : 0.03	3 : 0.03	b : 0.03	h : 0.01	a : 0.01	
c : 0.24	e : 0.14	g : 0.10	d : 0.10	f : 0.07	4 : 0.05	= : 0.05	] : 0.05	i : 0.05	2 : 0.03	3 : 0.03	b : 0.01	h : 0.01	
c : 0.23	d : 0.12	e : 0.10	f : 0.08	g : 0.08	4 : 0.07	= : 0.03	a : 0.03	i : 0.03	2 : 0.03	3 : 0.03	] : 0.03	b : 0.03	5 : 0.01	h : 0.01	
2 : 0.14	d : 0.12	e : 0.12	c : 0.10	f : 0.07	] : 0.07	b : 0.07	g : 0.05	4 : 0.05	= : 0.03	i : 0.03	3 : 0.03	5 : 0.01	h : 0.01	a : 0.01	: : 0.01	

#score	779.0664892194537
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_transcript_m3_run2.txt

#BEAR
"""ddddqqqqqqqqdddd2	chr12:104340987-104341218(+)$1	231	22	42	15.5169
c[eeeeeqqqqqqqqeeeee	chr5:37392023-37392325(+)$1	302	139	159	13.9839
[ccc[bbqqqqqqqqbb]cc	chr12:56575137-56575480(-)$1	343	83	103	13.5387
$$$ddddqqqqqqqqdddd2	chr14:73572536-73572792(+)$1	256	42	62	14.9331
!bb[cccqqqqqqqqccc]b	chr6:12015709-12016006(+)$1	297	201	221	14.8306
dddddddqqqqqqqqddddd	chrX:53439929-53440189(-)$1	260	98	118	14.5043
ff[ddddqqqqqqqqdddd3	chrX:70587807-70588123(+)$1	316	265	285	15.2714
a!!acccqqqqqqqqccc]a	chr6:4037624-4037883(+)$1	259	13	33	15.6606
bb!!cccqqqqqqqqccc]b	chr6:79664503-79664772(-)$1	269	86	106	15.1161
::a[cccqqqqqqqqccc]a	chr1:145456890-145457189(-)$1	299	175	195	13.7802
cc[ddddqqqqqqqqdddd]	chr11:65267984-65268191(+)$1	207	120	140	15.4029
dddd[bbqqqqqqqqbb]dd	chr1:46072974-46073238(+)$1	264	160	180	13.4191
gggggggqqqqqqqqggggg	chr13:107196361-107196609(-)$1	248	208	228	14.3019
dddd!!aqqqqqqqqa22dd	chr11:73950079-73950403(+)$1	324	167	187	13.6566
b[eeeeeqqqqqqqqeeeee	chr3:56647527-56647867(+)$1	340	40	60	13.8097
dd!!cccqqqqqqqqccc22	chr14:103807199-103807460(+)$1	261	225	245	15.3434
%%eeeeeqqqqqqqqeeeee	chr16:89351871-89352124(-)$1	253	148	168	12.8996
iiiiiiiqqqqqqqqiiiii	chr12:76453482-76453688(-)$1	206	16	36	14.3643
)))ddddqqqqqqqqdddd9	chr21:38544854-38545148(+)$1	294	162	182	13.3572
gggggggqqqqqqqqggggg	chr1:67423675-67424003(+)$1	328	14	34	14.3019
fff[cccqqqqqqqqccc33	chr17:27003138-27003456(+)$1	318	21	41	15.2558
eeee!!aqqqqqqqqa22ee	chr2:232326239-232326523(-)$1	284	208	228	13.6530
ff"""bbqqqqqqqqbb333	chr11:93469203-93469464(-)$1	261	185	205	14.2234
gggggggqqqqqqqqggggg	chr11:71726265-71726520(-)$1	255	98	118	14.3019
]aeeeeeqqqqqqqqeeeee	chr1:235377140-235377440(-)$1	300	214	234	13.5695
####cccqqqqqqqqccc33	chr5:138661081-138661410(+)$1	329	152	172	15.8753
dddd!!aqqqqqqqqa]ddd	chr3:178977601-178977876(-)$1	275	136	156	14.1069
ff[a[bbqqqqqqqqbb]a]	chr16:89952154-89952409(+)$1	255	190	210	13.7943
ddddcccqqqqqqqqccc]d	chr17:27001278-27001559(+)$1	281	175	195	14.8052
iiiiiiiqqqqqqqqiiiii	chr1:29475064-29475370(-)$1	306	187	207	14.3643
b"""cccqqqqqqqqccc44	chr1:29475314-29475590(-)$1	276	127	147	15.6101
:bb[cccqqqqqqqqcccbb	chr10:43292769-43293023(+)$1	254	153	173	13.3695
ccc[cccqqqqqqqqccc]c	chr11:61914029-61914296(+)$1	267	228	248	15.2999
cc[ddddqqqqqqqqdddd]	chr11:65267928-65268136(+)$1	208	176	196	15.4029
cc[ddddqqqqqqqqdddd]	chr11:65268029-65268233(+)$1	204	75	95	15.4029
ggg[cccqqqqqqqqcccgg	chr15:93547815-93548082(+)$1	267	188	208	15.2453
"""ddddqqqqqqqqdddde	chr1:16891202-16891509(-)$1	307	46	66	15.4107
eee[cccqqqqqqqqccc]e	chr2:96953121-96953388(-)$1	267	76	96	15.1004
gggggggqqqqqqqqggggg	chrX:64956939-64957170(+)$1	231	11	31	14.3019
cc[ddddqqqqqqqqdddd]	chr11:65267960-65268165(+)$1	205	144	164	15.4029
ee[ddddqqqqqqqqdddd4	chr1:25812077-25812388(+)$1	311	73	93	15.1962
eeee!!aqqqqqqqqa22ee	chr2:232326150-232326354(-)$1	204	39	59	13.6530
"""ddddqqqqqqqqdddd5	chr17:48823187-48823434(+)$1	247	104	124	14.8614
[bb[cccqqqqqqqqccc]b	chr17:48822987-48823253(+)$1	266	9	29	14.7708
dd[ddddqqqqqqqqdddd]	chr8:95541195-95541444(-)$1	249	163	183	15.1695
cc[ddddqqqqqqqqdddd]	chr11:65268065-65268272(+)$1	207	39	59	15.4029
b!!ddddqqqqqqqqdddd2	chr7:102962328-102962628(-)$1	300	105	125	15.3441
gggddddqqqqqqqqdddd9	chr5:98215167-98215450(-)$1	283	26	46	14.5439
##eeeeeqqqqqqqqeeeee	chrX:135593763-135594070(+)$1	307	111	131	14.0384
b!!ddddqqqqqqqqdddd4	chr1:21071937-21072170(-)$1	233	26	46	15.4469
ffffcccqqqqqqqqccc]f	chr18:252436-252684(-)$1	248	23	43	14.5249
cc!!cccqqqqqqqqccc22	chr8:117859790-117860031(-)$1	241	183	203	15.5768
:dddd[aqqqqqqqqadddd	chr12:123879487-123879782(+)$1	295	131	151	13.5880
gggggggqqqqqqqqggggg	chr4:77951855-77952155(+)$1	300	0	20	14.3019
d[a[cccqqqqqqqqccc]a	chr11:47741379-47741663(-)$1	284	108	128	15.4575
$$$ddddqqqqqqqqdddd2	chrX:64737775-64738089(-)$1	314	125	145	14.9331
eee!!bbqqqqqqqqbb]ee	chr5:179153580-179153800(+)$1	220	141	161	13.6892
gggggggqqqqqqqqggggg	chr5:71491275-71491529(+)$1	254	195	215	14.3019
hheeeeeqqqqqqqqeeeee	chr5:139903626-139903926(+)$1	300	47	67	13.4212
:bb[cccqqqqqqqqccc]b	chrX:64955181-64955392(+)$1	211	89	109	13.9458
ggggcccqqqqqqqqccc22	chr3:37367422-37367684(+)$1	262	144	164	15.1060
eee!!bbqqqqqqqqbb22e	chr1:222826247-222826541(+)$1	294	228	248	13.4720
"""ddddqqqqqqqqddddc	chr9:100777576-100777789(+)$1	213	149	169	15.3847
(bb[cccqqqqqqqqccc]b	chr11:61914101-61914319(+)$1	218	171	191	14.1702
c"""cccqqqqqqqqccc44	chr22:38017522-38017804(+)$1	282	189	209	15.7843
dd"""bbqqqqqqqqbb]dd	chr14:102551189-102551440(-)$1	251	203	223	13.7905

#otherMatches

#Seq PSSM
AAUUAUGAUUUUAUACAUAU	chr12:104340987-104341218(+)$1	231	22	42	15.5169
UAUUGAGCCAACAUCCUCAA	chr5:37392023-37392325(+)$1	302	139	159	13.9839
AUUCUCCAUCCUAUAGGUGA	chr12:56575137-56575480(-)$1	343	83	103	13.5387
AGAUCGUGAAAGGGAACgag	chr14:73572536-73572792(+)$1	256	42	62	14.9331
UGCAUUAAGUAGAAGUAAGG	chr6:12015709-12016006(+)$1	297	201	221	14.8306
CAGGCUGACCGGUACCAGCG	chrX:53439929-53440189(-)$1	260	98	118	14.5043
AGUCCAGUUUGGGCUCUGGU	chrX:70587807-70588123(+)$1	316	265	285	15.2714
CCUCGAGAUGAUAUCCUCAG	chr6:4037624-4037883(+)$1	259	13	33	15.6606
UCACAGGACCAUCAGCCUAG	chr6:79664503-79664772(-)$1	269	86	106	15.1161
uaugaugaagaagaacauga	chr1:145456890-145457189(-)$1	299	175	195	13.7802
GCAAUUUGGUGAUGAAGGUA	chr11:65267984-65268191(+)$1	207	120	140	15.4029
AGAUAUGGAUAUAAGUAAAU	chr1:46072974-46073238(+)$1	264	160	180	13.4191
CCUGGGCAAGGGGAAGUCCA	chr13:107196361-107196609(-)$1	248	208	228	14.3019
AGAUGAGGAAGGAAGUGAGU	chr11:73950079-73950403(+)$1	324	167	187	13.6566
GCUUAGAUUUUUAUUUUUGA	chr3:56647527-56647867(+)$1	340	40	60	13.8097
UGCAAAUUUUCCUCCAUUAU	chr14:103807199-103807460(+)$1	261	225	245	15.3434
AAGGCCUCAAGCACAAGGCC	chr16:89351871-89352124(-)$1	253	148	168	12.8996
UUAAAUCAUUUUAGCGAUUU	chr12:76453482-76453688(-)$1	206	16	36	14.3643
AAGUUGAAAAGGCACUUAGA	chr21:38544854-38545148(+)$1	294	162	182	13.3572
GAAUCAGAAAUAUCACUGAU	chr1:67423675-67424003(+)$1	328	14	34	14.3019
UGCUGCCACCUACAGGGCCC	chr17:27003138-27003456(+)$1	318	21	41	15.2558
CUCAGAGgaugaggacgaug	chr2:232326239-232326523(-)$1	284	208	228	13.6530
UAGAAAUGAAUAAAGAUAAA	chr11:93469203-93469464(-)$1	261	185	205	14.2234
GUCCUUGAAGGUCACCAAGG	chr11:71726265-71726520(-)$1	255	98	118	14.3019
GAGUGCUAUCCACCAGGCAU	chr1:235377140-235377440(-)$1	300	214	234	13.5695
GAUGAUCCCAACAAAGAUAC	chr5:138661081-138661410(+)$1	329	152	172	15.8753
UCACAACGAAGAAGAGGGUG	chr3:178977601-178977876(-)$1	275	136	156	14.1069
CAGGAAGCACGUUCUCUACG	chr16:89952154-89952409(+)$1	255	190	210	13.7943
AACGCAGUGAGUAGUCUGUC	chr17:27001278-27001559(+)$1	281	175	195	14.8052
CCGCUCCGUGUCAAAGGAGC	chr1:29475064-29475370(-)$1	306	187	207	14.3643
ggagugugagcaggggcagg	chr1:29475314-29475590(-)$1	276	127	147	15.6101
AGGCAGCAGCAAGCAGCUCC	chr10:43292769-43293023(+)$1	254	153	173	13.3695
gcggcgcgagcaggagcggc	chr11:61914029-61914296(+)$1	267	228	248	15.2999
GCAAUUUGGUGAUGAAGGUA	chr11:65267928-65268136(+)$1	208	176	196	15.4029
GCAAUUUGGUGAUGAAGGUA	chr11:65268029-65268233(+)$1	204	75	95	15.4029
GCCAGUGUCUGCAGCCGCGG	chr15:93547815-93548082(+)$1	267	188	208	15.2453
GUGUAGGGGAAUCAGCUUAA	chr1:16891202-16891509(-)$1	307	46	66	15.4107
GCCUCCUUCCUGGAUAGGUG	chr2:96953121-96953388(-)$1	267	76	96	15.1004
CUUGGGGUGGAUCAUUUCCA	chrX:64956939-64957170(+)$1	231	11	31	14.3019
GCAAUUUGGUGAUGAAGGUA	chr11:65267960-65268165(+)$1	205	144	164	15.4029
GCCAGUUGGAGAAAAAGCUA	chr1:25812077-25812388(+)$1	311	73	93	15.1962
CUCAGAGgaugaggacgaug	chr2:232326150-232326354(-)$1	204	39	59	13.6530
GAACAUCAGACAGAAGAUGC	chr17:48823187-48823434(+)$1	247	104	124	14.8614
UACAGAUAACUUCACAUUAG	chr17:48822987-48823253(+)$1	266	9	29	14.7708
AGGACUUUGGGGUUUAAGUA	chr8:95541195-95541444(-)$1	249	163	183	15.1695
GCAAUUUGGUGAUGAAGGUA	chr11:65268065-65268272(+)$1	207	39	59	15.4029
ACAAGCUGAAUUAGAAGCUG	chr7:102962328-102962628(-)$1	300	105	125	15.3441
CUUCUCAAAUAUGGAUGAGG	chr5:98215167-98215450(-)$1	283	26	46	14.5439
AGCUGCUGAUAAAAAGGCGG	chrX:135593763-135594070(+)$1	307	111	131	14.0384
GAGUUCUGUUUCCGAAGAAA	chr1:21071937-21072170(-)$1	233	26	46	15.4469
UGUCUGAUGACUGCUUCAUG	chr18:252436-252684(-)$1	248	23	43	14.5249
AGUUCUACAGCUUCUUGGUU	chr8:117859790-117860031(-)$1	241	183	203	15.5768
ACGGAGCGCCAUGAAGUCCG	chr12:123879487-123879782(+)$1	295	131	151	13.5880
UUUUUUGAACAGAUCCAAAG	chr4:77951855-77952155(+)$1	300	0	20	14.3019
UAGUUCCAGUGAAGAGGAUC	chr11:47741379-47741663(-)$1	284	108	128	15.4575
UUUCUCUACAGGGCAAGAGU	chrX:64737775-64738089(-)$1	314	125	145	14.9331
GUCAGUCAAGAGGAGGAAGA	chr5:179153580-179153800(+)$1	220	141	161	13.6892
AGAGUCUGUCAAGAAAGAUU	chr5:71491275-71491529(+)$1	254	195	215	14.3019
GGCUCUUGCUGCUaaaagag	chr5:139903626-139903926(+)$1	300	47	67	13.4212
AGCACCAGAAGCAGAUGGAG	chrX:64955181-64955392(+)$1	211	89	109	13.9458
CAUCACUAAGAAAGCAGUAU	chr3:37367422-37367684(+)$1	262	144	164	15.1060
AGUGCGUUCAUGAAUACAAG	chr1:222826247-222826541(+)$1	294	228	248	13.4720
CCUGCAGAAACAGAACUGUU	chr9:100777576-100777789(+)$1	213	149	169	15.3847
gcggcgcgagcaggagcggc	chr11:61914101-61914319(+)$1	218	171	191	14.1702
CGAGCCCAGAGCACAGGGAG	chr22:38017522-38017804(+)$1	282	189	209	15.7843
CAAACCUGAAAUUGAAGAUG	chr14:102551189-102551440(-)$1	251	203	223	13.7905

#DB
...((((........)))).	chr12:104340987-104341218(+)$1	1	22	42	15.5169
(.(((((........)))))	chr5:37392023-37392325(+)$1	1	139	159	13.9839
.(((.((........)).))	chr12:56575137-56575480(-)$1	1	83	103	13.5387
...((((........)))).	chr14:73572536-73572792(+)$1	1	42	62	14.9331
.((.(((........))).)	chr6:12015709-12016006(+)$1	1	201	221	14.8306
)))((((........))))(	chrX:53439929-53440189(-)$1	1	98	118	14.5043
((.((((........)))).	chrX:70587807-70588123(+)$1	1	265	285	15.2714
(..((((........))).)	chr6:4037624-4037883(+)$1	1	13	33	15.6606
((..(((........))).)	chr6:79664503-79664772(-)$1	1	86	106	15.1161
..(.(((........))).)	chr1:145456890-145457189(-)$1	1	175	195	13.7802
((.((((........)))).	chr11:65267984-65268191(+)$1	1	120	140	15.4029
((((.((........)).))	chr1:46072974-46073238(+)$1	1	160	180	13.4191
(((((((........)))))	chr13:107196361-107196609(-)$1	1	208	228	14.3019
((((..(........)..))	chr11:73950079-73950403(+)$1	1	167	187	13.6566
(.(((((........)))))	chr3:56647527-56647867(+)$1	1	40	60	13.8097
((..(((........)))..	chr14:103807199-103807460(+)$1	1	225	245	15.3434
..(((((........)))))	chr16:89351871-89352124(-)$1	1	148	168	12.8996
(((((((........)))))	chr12:76453482-76453688(-)$1	1	16	36	14.3643
...((((........)))).	chr21:38544854-38545148(+)$1	1	162	182	13.3572
(((((((........)))))	chr1:67423675-67424003(+)$1	1	14	34	14.3019
(((.(((........)))..	chr17:27003138-27003456(+)$1	1	21	41	15.2558
((((..(........)..))	chr2:232326239-232326523(-)$1	1	208	228	13.6530
((...((........))...	chr11:93469203-93469464(-)$1	1	185	205	14.2234
(((((((........)))))	chr11:71726265-71726520(-)$1	1	98	118	14.3019
.)(((((........)))))	chr1:235377140-235377440(-)$1	1	214	234	13.5695
....(((........)))..	chr5:138661081-138661410(+)$1	1	152	172	15.8753
((((..(........).)))	chr3:178977601-178977876(-)$1	1	136	156	14.1069
((.(.((........)).).	chr16:89952154-89952409(+)$1	1	190	210	13.7943
(((((((........))).)	chr17:27001278-27001559(+)$1	1	175	195	14.8052
(((((((........)))))	chr1:29475064-29475370(-)$1	1	187	207	14.3643
(...(((........)))..	chr1:29475314-29475590(-)$1	1	127	147	15.6101
.((.(((........)))))	chr10:43292769-43293023(+)$1	1	153	173	13.3695
(((.(((........))).)	chr11:61914029-61914296(+)$1	1	228	248	15.2999
((.((((........)))).	chr11:65267928-65268136(+)$1	1	176	196	15.4029
((.((((........)))).	chr11:65268029-65268233(+)$1	1	75	95	15.4029
(((.(((........)))))	chr15:93547815-93548082(+)$1	1	188	208	15.2453
...((((........)))))	chr1:16891202-16891509(-)$1	1	46	66	15.4107
(((.(((........))).)	chr2:96953121-96953388(-)$1	1	76	96	15.1004
(((((((........)))))	chrX:64956939-64957170(+)$1	1	11	31	14.3019
((.((((........)))).	chr11:65267960-65268165(+)$1	1	144	164	15.4029
((.((((........)))).	chr1:25812077-25812388(+)$1	1	73	93	15.1962
((((..(........)..))	chr2:232326150-232326354(-)$1	1	39	59	13.6530
...((((........)))).	chr17:48823187-48823434(+)$1	1	104	124	14.8614
.((.(((........))).)	chr17:48822987-48823253(+)$1	1	9	29	14.7708
((.((((........)))).	chr8:95541195-95541444(-)$1	1	163	183	15.1695
((.((((........)))).	chr11:65268065-65268272(+)$1	1	39	59	15.4029
(..((((........)))).	chr7:102962328-102962628(-)$1	1	105	125	15.3441
(((((((........)))).	chr5:98215167-98215450(-)$1	1	26	46	14.5439
..(((((........)))))	chrX:135593763-135594070(+)$1	1	111	131	14.0384
(..((((........)))).	chr1:21071937-21072170(-)$1	1	26	46	15.4469
(((((((........))).)	chr18:252436-252684(-)$1	1	23	43	14.5249
((..(((........)))..	chr8:117859790-117860031(-)$1	1	183	203	15.5768
.((((.(........)))))	chr12:123879487-123879782(+)$1	1	131	151	13.5880
(((((((........)))))	chr4:77951855-77952155(+)$1	1	0	20	14.3019
(.(.(((........))).)	chr11:47741379-47741663(-)$1	1	108	128	15.4575
...((((........)))).	chrX:64737775-64738089(-)$1	1	125	145	14.9331
(((..((........)).))	chr5:179153580-179153800(+)$1	1	141	161	13.6892
(((((((........)))))	chr5:71491275-71491529(+)$1	1	195	215	14.3019
))(((((........)))))	chr5:139903626-139903926(+)$1	1	47	67	13.4212
.((.(((........))).)	chrX:64955181-64955392(+)$1	1	89	109	13.9458
(((((((........)))..	chr3:37367422-37367684(+)$1	1	144	164	15.1060
(((..((........))..)	chr1:222826247-222826541(+)$1	1	228	248	13.4720
...((((........)))))	chr9:100777576-100777789(+)$1	1	149	169	15.3847
.((.(((........))).)	chr11:61914101-61914319(+)$1	1	171	191	14.1702
(...(((........)))..	chr22:38017522-38017804(+)$1	1	189	209	15.7843
((...((........)).))	chr14:102551189-102551440(-)$1	1	203	223	13.7905

#PSSM
c : 0.13	d : 0.13	g : 0.13	e : 0.09	f : 0.07	b : 0.07	" : 0.06	: : 0.06	[ : 0.03	$ : 0.03	i : 0.03	# : 0.03	! : 0.01	a : 0.01	% : 0.01	) : 0.01	] : 0.01	h : 0.01	( : 0.01	
d : 0.13	g : 0.13	c : 0.12	" : 0.09	b : 0.09	e : 0.09	f : 0.07	[ : 0.04	! : 0.04	$ : 0.03	i : 0.03	# : 0.03	: : 0.01	% : 0.01	) : 0.01	a : 0.01	h : 0.01	
e : 0.16	[ : 0.13	g : 0.13	" : 0.12	d : 0.09	! : 0.09	b : 0.07	c : 0.03	$ : 0.03	a : 0.03	i : 0.03	f : 0.03	) : 0.01	# : 0.01	
d : 0.36	[ : 0.16	e : 0.12	g : 0.10	! : 0.07	" : 0.06	a : 0.03	i : 0.03	c : 0.01	# : 0.01	f : 0.01	
c : 0.31	d : 0.30	e : 0.09	g : 0.09	! : 0.09	[ : 0.04	i : 0.03	" : 0.03	
c : 0.31	d : 0.28	b : 0.10	e : 0.09	g : 0.09	! : 0.06	i : 0.03	[ : 0.01	
c : 0.31	d : 0.28	b : 0.10	e : 0.09	g : 0.09	a : 0.07	i : 0.03	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.31	d : 0.28	b : 0.10	e : 0.09	g : 0.09	a : 0.07	i : 0.03	
c : 0.31	d : 0.30	b : 0.10	e : 0.09	g : 0.09	2 : 0.04	i : 0.03	] : 0.01	
d : 0.31	c : 0.31	e : 0.09	g : 0.09	] : 0.07	2 : 0.06	i : 0.03	3 : 0.01	
d : 0.36	] : 0.18	e : 0.13	g : 0.10	2 : 0.06	3 : 0.04	i : 0.03	4 : 0.03	c : 0.01	a : 0.01	b : 0.01	
e : 0.18	2 : 0.10	d : 0.10	] : 0.10	g : 0.10	b : 0.09	3 : 0.06	4 : 0.06	c : 0.04	a : 0.04	i : 0.03	9 : 0.03	5 : 0.01	f : 0.01	

#score	962.3673983722737
#seq	66
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_transcript_m3_run1.txt

#BEAR
!!eeeeeqqqqqqqqeeeee]f	chr9:131339002-131339221(+)$1	219	93	115	15.7964
eeee[bbqqqqqqqqbb333ee	chr8:22880094-22880384(-)$1	290	235	257	14.4506
$$$$cccqqqqqqqqccc]ddd	chr1:3703539-3703810(-)$1	271	24	46	14.9564
!!cccbbqqqqqqqqbb]ccc2	chr4:122599468-122599696(-)$1	228	57	79	14.4318
eee[cccqqqqqqqqccceeee	chr8:11667233-11667460(+)$1	227	10	32	15.5970
!!eeeeeqqqqqqqqeeeee22	chr17:16285803-16286050(+)$1	247	186	208	15.6707
ccc[a[aqqqqqqqqa]a]ccc	chr11:47350757-47351028(+)$1	271	115	137	14.5175
c!!ddddqqqqqqqqdddd22c	chr9:136528741-136529013(-)$1	272	12	34	16.3017
[ffffffqqqqqqqqffffffc	chr2:219131469-219131689(-)$1	220	129	151	13.6208
"""ddddqqqqqqqqdddd333	chr7:26235920-26236136(-)$1	216	165	187	16.8072
cc[ddddqqqqqqqqdddd]cc	chr17:41570712-41570979(+)$1	267	228	250	15.9876
cc[ddddqqqqqqqqdddd]cc	chr9:136905081-136905381(-)$1	300	261	283	15.9876
"""ddddqqqqqqqqddddddd	chr19:51848374-51848718(-)$1	344	239	261	15.9033
ff!!cccqqqqqqqqccc22ff	chr17:74035654-74035906(-)$1	252	225	247	15.4780
d[eeeeeqqqqqqqqeeeee]d	chr20:36769581-36769880(-)$1	299	194	216	15.3899
iiiiiiiqqqqqqqqiiiiiii	chr3:49065089-49065329(-)$1	240	11	33	15.5225
#a[ddddqqqqqqqqddddaee	chr1:8926350-8926615(-)$1	265	104	126	15.9694
e"""cccqqqqqqqqccc333e	chr17:40048496-40048760(-)$1	264	185	207	16.5324
gggggggqqqqqqqqggggggg	chr2:73471070-73471276(+)$1	206	169	191	15.3495
eaeeeeeqqqqqqqqeeeee33	chr17:56160878-56161142(+)$1	264	83	105	15.5379
c!!ddddqqqqqqqqdddd22c	chr3:184024158-184024384(+)$1	226	34	56	16.3017
ff[ddddqqqqqqqqdddd22f	chr16:70602088-70602301(+)$1	213	95	117	15.7231
=======qqqqqqqq=======	chr11:34489740-34490003(+)$1	263	73	95	15.9948
=======qqqqqqqq=======	chr10:76360037-76360352(+)$1	315	41	63	15.9948
eeeddddqqqqqqqqdddd]ee	chr1:10352013-10352258(+)$1	245	38	60	15.6675
gg[ddddqqqqqqqqdddd22g	chr14:45587132-45587376(-)$1	244	90	112	16.1690
eee[cccqqqqqqqqccceeee	chr9:86587658-86587867(-)$1	209	129	151	15.5970
c"""cccqqqqqqqqcccccce	chr11:61077246-61077505(-)$1	259	104	126	15.9535
e[eeeeeqqqqqqqqeeeeeee	chrX:77369213-77369488(+)$1	275	43	65	15.4460
eeee[bbqqqqqqqqbb]eeee	chr14:58727565-58727823(+)$1	258	78	100	14.3146
=======qqqqqqqq=======	chr11:57077484-57077727(-)$1	243	74	96	15.9948
gggggggqqqqqqqqggggggg	chr20:17602037-17602264(-)$1	227	77	99	15.3495
gggggggqqqqqqqqggggggg	chr9:35057377-35057613(-)$1	236	22	44	15.3495
iiii[bbqqqqqqqqbbiiiii	chr17:40048432-40048640(-)$1	208	35	57	14.8020
gggggggqqqqqqqqggggggg	chr4:119673759-119674105(-)$1	346	207	229	15.3495
ddddcccqqqqqqqqccccccl	chr14:102496399-102496636(+)$1	237	194	216	14.5050
bb[ddddqqqqqqqqdddd]bb	chr2:46608636-46608926(+)$1	290	219	241	15.0709
eeeecccqqqqqqqqccc]eee	chr17:49232910-49233191(+)$1	281	208	230	15.4911
ggggggaqqqqqqqqa]ggggg	chr14:64905714-64905984(+)$1	270	211	233	15.1834
eeeeebbqqqqqqqqbb]eeee	chr2:37347001-37347389(-)$1	388	307	329	14.3351
dd!!cccqqqqqqqqcccdddd	chr1:120277891-120278167(+)$1	276	95	117	15.3097
!!eeeeeqqqqqqqqeeeee22	chr5:138269673-138269942(+)$1	269	120	142	15.6707
$$$ddddqqqqqqqqdddd]ff	chr8:12946033-12946314(-)$1	281	248	270	15.6535
!bbddddqqqqqqqqdddd]bb	chr21:45736220-45736508(+)$1	288	107	129	14.8610
d[eeeeeqqqqqqqqeeeee]d	chr9:38396205-38396460(+)$1	255	173	195	15.3899
####cccqqqqqqqqccc333b	chr8:22465447-22465677(+)$1	230	2	24	16.3412
b[eeeeeqqqqqqqqeeeee22	chr14:102474494-102474719(+)$1	225	174	196	15.2208
iiii[bbqqqqqqqqbbiiiii	chr17:40048440-40048696(-)$1	256	91	113	14.8020
=======qqqqqqqq=======	chr18:55280733-55280971(-)$1	238	19	41	15.9948
ddd[cccqqqqqqqqccc22dd	chr17:2596008-2596248(-)$1	240	192	214	14.8484
####cccqqqqqqqqccc]eee	chr16:28856629-28856856(-)$1	227	149	171	16.1679
ggg[cccqqqqqqqqcccgggg	chr17:21731329-21731552(+)$1	223	184	206	15.9499
f"""cccqqqqqqqqccc333f	chr10:88218645-88218914(-)$1	269	50	72	16.4060
''eeeeeqqqqqqqqeeeeeee	chr12:103248881-103249211(-)$1	330	216	238	14.3049
gg!!cccqqqqqqqqcccgggg	chr2:54849440-54849716(+)$1	276	69	91	16.2087
"""ddddqqqqqqqqdddd]gg	chr7:94293099-94293356(+)$1	257	116	138	16.5907
####cccqqqqqqqqccc22ee	chr5:118809560-118809809(+)$1	249	18	40	16.0224
dd[ddddqqqqqqqqdddd]dd	chrX:131524803-131525104(-)$1	301	107	129	15.5369
$$$ddddqqqqqqqqddddeee	chr17:57743801-57744034(+)$1	233	153	175	15.6414
b[eeeeeqqqqqqqqeeeee22	chr3:53259653-53259934(-)$1	281	195	217	15.2208
bbeeeeeqqqqqqqqeeeee44	chr6:33372615-33372877(+)$1	262	152	174	14.8606
bb[ddddqqqqqqqqdddd]bb	chr2:73477398-73477656(+)$1	258	221	243	15.0709
cceeeeeqqqqqqqqeeeee33	chr16:70598937-70599239(+)$1	302	164	186	15.5187
ggg[cccqqqqqqqqcccgggg	chr6:24701656-24701966(+)$1	310	116	138	15.9499
gggggggqqqqqqqqggggggg	chr17:27009912-27010204(+)$1	292	1	23	15.3495
f!!ddddqqqqqqqqddddfff	chrX:20183053-20183278(-)$1	225	101	123	15.8153
"ccc[bbqqqqqqqqbb]cccb	chr10:79745588-79745844(-)$1	256	45	67	13.9170
gggddddqqqqqqqqdddd22g	chr19:34887144-34887400(+)$1	256	57	79	15.9535

#otherMatches

#Seq PSSM
GUUUAGGAGCAGCACCCUGAGG	chr9:131339002-131339221(+)$1	219	93	115	15.7964
GUUUACCUUUUUUCUGGAAAAA	chr8:22880094-22880384(-)$1	290	235	257	14.4506
ACAAGCUGAGGGACAAGCGCCU	chr1:3703539-3703810(-)$1	271	24	46	14.9564
AAGCCUGGAAGAUGACGUGGUG	chr4:122599468-122599696(-)$1	228	57	79	14.4318
GUGUGGAAAAGAAGGUCCCGCU	chr8:11667233-11667460(+)$1	227	10	32	15.5970
AAAUUACAAGUUUCAGUAAUAG	chr17:16285803-16286050(+)$1	247	186	208	15.6707
GAGCGUGUCCACCUUCUCCCUC	chr11:47350757-47351028(+)$1	271	115	137	14.5175
CCACAUGCCCCAUCCCAUGCUG	chr9:136528741-136529013(-)$1	272	12	34	16.3017
UCAGAGCGGGAGUCAGCUCUGU	chr2:219131469-219131689(-)$1	220	129	151	13.6208
AAUAUGAUUAGGUUUUCAUUAG	chr7:26235920-26236136(-)$1	216	165	187	16.8072
CCAGCCUGAGCAUGAAGGUAGG	chr17:41570712-41570979(+)$1	267	228	250	15.9876
GCGCUCAGCACGCCAUGGGGGC	chr9:136905081-136905381(-)$1	300	261	283	15.9876
AUUGGGCGGAUUUGAGCCCCUC	chr19:51848374-51848718(-)$1	344	239	261	15.9033
GCAAGAGUUUAACAUCUUCGGC	chr17:74035654-74035906(-)$1	252	225	247	15.4780
AAGGUGCGUGGGCGGGCACUGU	chr20:36769581-36769880(-)$1	299	194	216	15.3899
UGGUCCUCAGCCCCAAGGAUCG	chr3:49065089-49065329(-)$1	240	11	33	15.5225
UGCAGGAGUUCAUGAUCCUCCC	chr1:8926350-8926615(-)$1	265	104	126	15.9694
GCUCUGCCUAUGACAGCACCAU	chr17:40048496-40048760(-)$1	264	185	207	16.5324
ggcuagucuugaacuacuggcu	chr2:73471070-73471276(+)$1	206	169	191	15.3495
CCCAGGGAACACCGCCCCUGCC	chr17:56160878-56161142(+)$1	264	83	105	15.5379
UGACUCCaaagagaaggaggaa	chr3:184024158-184024384(+)$1	226	34	56	16.3017
AGCAUAUUGCCAAUUAUAUCUC	chr16:70602088-70602301(+)$1	213	95	117	15.7231
CUUGCUCUUUUCUCUGAGCAGG	chr11:34489740-34490003(+)$1	263	73	95	15.9948
AUAAAGUUUUGUUUUAUUUUAU	chr10:76360037-76360352(+)$1	315	41	63	15.9948
GAUUUAAUUGACAUUUUGGUAU	chr1:10352013-10352258(+)$1	245	38	60	15.6675
CGACUGGAGAUUGAACCAGAAU	chr14:45587132-45587376(-)$1	244	90	112	16.1690
UUUACAUUUGAUUUUAUGAAAC	chr9:86587658-86587867(-)$1	209	129	151	15.5970
AUAUGCCCUCAGUCUGGUUUCC	chr11:61077246-61077505(-)$1	259	104	126	15.9535
CCAAGCAUCAAAUUCUGCUUGG	chrX:77369213-77369488(+)$1	275	43	65	15.4460
CUGUUUGUAUACUUUCAUGCAG	chr14:58727565-58727823(+)$1	258	78	100	14.3146
GGAGUUCAGAAAGAGGGAUUCC	chr11:57077484-57077727(-)$1	243	74	96	15.9948
GGCCUCCAAGUUGAGGGAGGCC	chr20:17602037-17602264(-)$1	227	77	99	15.3495
GGCCUGGGAUGAAAUCCAGGCU	chr9:35057377-35057613(-)$1	236	22	44	15.3495
UAGAUGUGCUCAUCAACUUUGC	chr17:40048432-40048640(-)$1	208	35	57	14.8020
GAUGGUUUCCUUGUCAACUAUC	chr4:119673759-119674105(-)$1	346	207	229	15.3495
ACCUGCCGUCAUUGAGGCCCAG	chr14:102496399-102496636(+)$1	237	194	216	14.5050
AGCGGGGUGAGUCAUCCCCACU	chr2:46608636-46608926(+)$1	290	219	241	15.0709
UUGUUGGUCUGAAAUUCAUGCA	chr17:49232910-49233191(+)$1	281	208	230	15.4911
GAGGCACUAGAUCUUGCUGCUU	chr14:64905714-64905984(+)$1	270	211	233	15.1834
uauuaauugauauauauauaau	chr2:37347001-37347389(-)$1	388	307	329	14.3351
GGAUCGUGGACGAAGGCGCCCU	chr1:120277891-120278167(+)$1	276	95	117	15.3097
CCGCCCCCACCCCUCGGGGCUC	chr5:138269673-138269942(+)$1	269	120	142	15.6707
CAAACUGAAAUUUACCAGUAUG	chr8:12946033-12946314(-)$1	281	248	270	15.6535
GGCUGGGCUUCGACACCCGUGU	chr21:45736220-45736508(+)$1	288	107	129	14.8610
GAGCAGACCCCCCUCUCUGCCC	chr9:38396205-38396460(+)$1	255	173	195	15.3899
uuuuuGAGUCACCAGUCAUUUC	chr8:22465447-22465677(+)$1	230	2	24	16.3412
ACAAGAGUAAGACACCUCUUCU	chr14:102474494-102474719(+)$1	225	174	196	15.2208
UAGAUGUGCUCAUCAACUUUGC	chr17:40048440-40048696(-)$1	256	91	113	14.8020
UGACAUUAUUGAACAAAUGUUG	chr18:55280733-55280971(-)$1	238	19	41	15.9948
CCCGCGCCGGGGGAUGCGAGGG	chr17:2596008-2596248(-)$1	240	192	214	14.8484
UCAUGUGGAGUAUAGCACUGCC	chr16:28856629-28856856(-)$1	227	149	171	16.1679
UUUGCAGGCAAGAAGUUGGAAG	chr17:21731329-21731552(+)$1	223	184	206	15.9499
AGUUUUGGAUUGCCACAAUUAU	chr10:88218645-88218914(-)$1	269	50	72	16.4060
AUUUUUCCACUUCUUGAAAAGU	chr12:103248881-103249211(-)$1	330	216	238	14.3049
GGAUUGAACAAACCAUCAUCAU	chr2:54849440-54849716(+)$1	276	69	91	16.2087
CCGUGUCUGCUUCGUGACAAGC	chr7:94293099-94293356(+)$1	257	116	138	16.5907
UGUUUGCUUGUUUUUGCAUUAC	chr5:118809560-118809809(+)$1	249	18	40	16.0224
AUGGAUUACAUCAAAGGUCGAU	chrX:131524803-131525104(-)$1	301	107	129	15.5369
UUAUAUGAUAUAAAACGUGCAG	chr17:57743801-57744034(+)$1	233	153	175	15.6414
CAUUCCUGAGAUUCUGGGAAAG	chr3:53259653-53259934(-)$1	281	195	217	15.2208
GACUGCACAACCAGCUGCAGGA	chr6:33372615-33372877(+)$1	262	152	174	14.8606
GCUGAUCAGACCUUGGAUUUGU	chr2:73477398-73477656(+)$1	258	221	243	15.0709
CCGAGUGAUGAAUCCCAUUCAA	chr16:70598937-70599239(+)$1	302	164	186	15.5187
UGGAUCUGACCAACAAGGCCAC	chr6:24701656-24701966(+)$1	310	116	138	15.9499
AGGACCACAACACCCUGGUCCU	chr17:27009912-27010204(+)$1	292	1	23	15.3495
UGGUUCAUAGAGACUUGAAACC	chrX:20183053-20183278(-)$1	225	101	123	15.8153
GAGCUGUUUGUAGUUGCCGCUG	chr10:79745588-79745844(-)$1	256	45	67	13.9170
CCAGGGCGACAUGGAGUCCAAU	chr19:34887144-34887400(+)$1	256	57	79	15.9535

#DB
..(((((........))))).)	chr9:131339002-131339221(+)$1	1	93	115	15.7964
((((.((........))...))	chr8:22880094-22880384(-)$1	1	235	257	14.4506
....(((........))).)))	chr1:3703539-3703810(-)$1	1	24	46	14.9564
..(((((........)).))).	chr4:122599468-122599696(-)$1	1	57	79	14.4318
(((.(((........)))))))	chr8:11667233-11667460(+)$1	1	10	32	15.5970
..(((((........)))))..	chr17:16285803-16286050(+)$1	1	186	208	15.6707
(((.(.(........).).)))	chr11:47350757-47351028(+)$1	1	115	137	14.5175
(..((((........))))..)	chr9:136528741-136529013(-)$1	1	12	34	16.3017
.((((((........)))))))	chr2:219131469-219131689(-)$1	1	129	151	13.6208
...((((........))))...	chr7:26235920-26236136(-)$1	1	165	187	16.8072
((.((((........)))).))	chr17:41570712-41570979(+)$1	1	228	250	15.9876
((.((((........)))).))	chr9:136905081-136905381(-)$1	1	261	283	15.9876
...((((........)))))))	chr19:51848374-51848718(-)$1	1	239	261	15.9033
((..(((........)))..))	chr17:74035654-74035906(-)$1	1	225	247	15.4780
(.(((((........))))).)	chr20:36769581-36769880(-)$1	1	194	216	15.3899
(((((((........)))))))	chr3:49065089-49065329(-)$1	1	11	33	15.5225
.(.((((........)))))))	chr1:8926350-8926615(-)$1	1	104	126	15.9694
(...(((........)))...)	chr17:40048496-40048760(-)$1	1	185	207	16.5324
(((((((........)))))))	chr2:73471070-73471276(+)$1	1	169	191	15.3495
(((((((........)))))..	chr17:56160878-56161142(+)$1	1	83	105	15.5379
(..((((........))))..)	chr3:184024158-184024384(+)$1	1	34	56	16.3017
((.((((........))))..)	chr16:70602088-70602301(+)$1	1	95	117	15.7231
(((((((........)))))))	chr11:34489740-34490003(+)$1	1	73	95	15.9948
(((((((........)))))))	chr10:76360037-76360352(+)$1	1	41	63	15.9948
(((((((........)))).))	chr1:10352013-10352258(+)$1	1	38	60	15.6675
((.((((........))))..)	chr14:45587132-45587376(-)$1	1	90	112	16.1690
(((.(((........)))))))	chr9:86587658-86587867(-)$1	1	129	151	15.5970
(...(((........)))))))	chr11:61077246-61077505(-)$1	1	104	126	15.9535
(.(((((........)))))))	chrX:77369213-77369488(+)$1	1	43	65	15.4460
((((.((........)).))))	chr14:58727565-58727823(+)$1	1	78	100	14.3146
(((((((........)))))))	chr11:57077484-57077727(-)$1	1	74	96	15.9948
(((((((........)))))))	chr20:17602037-17602264(-)$1	1	77	99	15.3495
(((((((........)))))))	chr9:35057377-35057613(-)$1	1	22	44	15.3495
((((.((........)))))))	chr17:40048432-40048640(-)$1	1	35	57	14.8020
(((((((........)))))))	chr4:119673759-119674105(-)$1	1	207	229	15.3495
))))(((........)))(((.	chr14:102496399-102496636(+)$1	1	194	216	14.5050
((.((((........)))).))	chr2:46608636-46608926(+)$1	1	219	241	15.0709
(((((((........))).)))	chr17:49232910-49233191(+)$1	1	208	230	15.4911
(((((((........).)))))	chr14:64905714-64905984(+)$1	1	211	233	15.1834
(((((((........)).))))	chr2:37347001-37347389(-)$1	1	307	329	14.3351
((..(((........)))))))	chr1:120277891-120278167(+)$1	1	95	117	15.3097
..(((((........)))))..	chr5:138269673-138269942(+)$1	1	120	142	15.6707
...((((........)))).))	chr8:12946033-12946314(-)$1	1	248	270	15.6535
.((((((........)))).))	chr21:45736220-45736508(+)$1	1	107	129	14.8610
(.(((((........))))).)	chr9:38396205-38396460(+)$1	1	173	195	15.3899
....(((........)))...)	chr8:22465447-22465677(+)$1	1	2	24	16.3412
(.(((((........)))))..	chr14:102474494-102474719(+)$1	1	174	196	15.2208
((((.((........)))))))	chr17:40048440-40048696(-)$1	1	91	113	14.8020
(((((((........)))))))	chr18:55280733-55280971(-)$1	1	19	41	15.9948
(((.(((........)))..))	chr17:2596008-2596248(-)$1	1	192	214	14.8484
....(((........))).)))	chr16:28856629-28856856(-)$1	1	149	171	16.1679
(((.(((........)))))))	chr17:21731329-21731552(+)$1	1	184	206	15.9499
(...(((........)))...)	chr10:88218645-88218914(-)$1	1	50	72	16.4060
..(((((........)))))))	chr12:103248881-103249211(-)$1	1	216	238	14.3049
((..(((........)))))))	chr2:54849440-54849716(+)$1	1	69	91	16.2087
...((((........)))).))	chr7:94293099-94293356(+)$1	1	116	138	16.5907
....(((........)))..))	chr5:118809560-118809809(+)$1	1	18	40	16.0224
((.((((........)))).))	chrX:131524803-131525104(-)$1	1	107	129	15.5369
...((((........)))))))	chr17:57743801-57744034(+)$1	1	153	175	15.6414
(.(((((........)))))..	chr3:53259653-53259934(-)$1	1	195	217	15.2208
(((((((........)))))..	chr6:33372615-33372877(+)$1	1	152	174	14.8606
((.((((........)))).))	chr2:73477398-73477656(+)$1	1	221	243	15.0709
(((((((........)))))..	chr16:70598937-70599239(+)$1	1	164	186	15.5187
(((.(((........)))))))	chr6:24701656-24701966(+)$1	1	116	138	15.9499
(((((((........)))))))	chr17:27009912-27010204(+)$1	1	1	23	15.3495
(..((((........)))))))	chrX:20183053-20183278(-)$1	1	101	123	15.8153
.(((.((........)).))))	chr10:79745588-79745844(-)$1	1	45	67	13.9170
(((((((........))))..)	chr19:34887144-34887400(+)$1	1	57	79	15.9535

#PSSM
g : 0.16	e : 0.14	c : 0.10	d : 0.08	! : 0.07	b : 0.07	" : 0.05	f : 0.05	# : 0.05	= : 0.05	$ : 0.04	i : 0.04	[ : 0.01	' : 0.01	
g : 0.16	! : 0.10	e : 0.10	" : 0.08	c : 0.07	[ : 0.07	= : 0.05	d : 0.05	b : 0.05	$ : 0.04	f : 0.04	i : 0.04	# : 0.04	a : 0.02	' : 0.01	
e : 0.27	g : 0.13	[ : 0.11	! : 0.08	" : 0.08	= : 0.05	$ : 0.04	c : 0.04	i : 0.04	# : 0.04	d : 0.02	f : 0.01	b : 0.01	
d : 0.29	e : 0.23	[ : 0.08	g : 0.08	= : 0.05	! : 0.04	i : 0.04	" : 0.04	# : 0.04	c : 0.02	$ : 0.01	f : 0.01	
d : 0.27	c : 0.26	e : 0.19	g : 0.08	[ : 0.07	= : 0.05	a : 0.01	f : 0.01	i : 0.01	
d : 0.27	c : 0.25	e : 0.17	b : 0.10	g : 0.08	= : 0.05	[ : 0.01	f : 0.01	i : 0.01	
d : 0.27	c : 0.25	e : 0.17	b : 0.10	g : 0.07	= : 0.05	a : 0.02	f : 0.01	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.27	c : 0.25	e : 0.17	b : 0.10	g : 0.07	= : 0.05	a : 0.02	f : 0.01	i : 0.01	
d : 0.27	c : 0.25	e : 0.17	b : 0.10	g : 0.07	= : 0.05	] : 0.02	f : 0.01	i : 0.01	
d : 0.27	c : 0.25	e : 0.17	g : 0.08	] : 0.05	= : 0.05	i : 0.04	3 : 0.01	a : 0.01	f : 0.01	
d : 0.29	e : 0.23	g : 0.13	3 : 0.05	] : 0.05	c : 0.05	= : 0.05	2 : 0.04	i : 0.04	f : 0.01	
e : 0.27	] : 0.13	g : 0.13	2 : 0.11	3 : 0.07	c : 0.07	= : 0.05	d : 0.04	i : 0.04	f : 0.02	a : 0.01	
e : 0.19	g : 0.14	2 : 0.13	c : 0.10	3 : 0.08	d : 0.07	f : 0.05	= : 0.05	] : 0.04	i : 0.04	b : 0.04	4 : 0.01	
e : 0.22	g : 0.17	d : 0.10	f : 0.08	c : 0.08	2 : 0.07	b : 0.07	= : 0.05	3 : 0.04	i : 0.04	l : 0.01	4 : 0.01	

#score	1052.9814752257782
#seq	68
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_CDS_m2_run1.txt

#BEAR
hhhhffffff[cccmmmmccc22ffffff3	chr17:78310033-78310295(+)$1	262	118	148	12.4068
dddd####ccccccmmmmccc]ccc22ddd	chr11:61913065-61913317(+)$1	252	131	161	12.8477
c!!bb[gggggggammmma]ggggggg]bb	chr14:104145656-104145999(+)$1	343	254	284	11.1633
dddbbdddd[a[bbmmmmbb4444a]dddd	chr17:79663628-79663889(+)$1	261	76	106	10.5082
##eeeee####cccmmmmccc333eeeee6	chr8:11667179-11667440(+)$1	261	190	220	13.4828
dddd[eeeee[cccmmmmccc]eeeee22d	chr7:4815227-4815499(+)$1	272	202	232	12.6537
giiiiiiiii[cccmmmmccc]iiiiiiii	chr7:104731621-104731872(+)$1	251	220	250	14.2655
cccbb[ccca[cccmmmmccc]a]ccc]bb	chr22:40804841-40805128(+)$1	287	57	87	13.7984
ddd####ccccccnnnnnccc22ccc22dd	chr4:174254034-174254245(-)$1	211	146	176	10.0062
eeeee!!ccc[cccmmmmccc]ccc22eee	chr7:128455695-128456042(+)$1	347	102	132	13.1911
[bb!!iiiiiiiiimmmmiiiiiiiii22b	chr6:126332386-126332644(+)$1	258	177	207	11.4230
####ffffff!!bbmmmmbb22ffffff44	chr12:56194247-56194518(-)$1	271	32	62	10.6918
ccccc[dddd[cccnnnnnccc]dddd22c	chr7:150764937-150765222(+)$1	285	8	38	9.1673
ddd[ccca"""cccmmmmccc]a]ccc]dd	chr16:2221481-2221745(+)$1	264	129	159	14.5412
dddd####bb!!bbmmmmbb]bb333dddd	chr11:129992157-129992475(+)$1	318	194	224	10.2678
d"""ffffff[cccmmmmccc333ffffff	chr1:27105546-27105833(+)$1	287	3	33	13.7088
:cccccc####cccmmmmccc22ccc]ccc	chr4:1737356-1737610(+)$1	254	186	216	13.5620
ddd####ccc[cccmmmmccccccddddee	chr7:148513659-148513942(-)$1	283	102	132	13.0517
hhggggggg[ddddmmmmdddd22gggggg	chr19:38894148-38894439(+)$1	291	77	107	10.9427
ggggggga[ddddmmmmdddd]a]gggggg	chr21:40720247-40720466(-)$1	219	146	176	10.1305
fffff"""bb[cccmmmmccc]bb]fffff	chr9:131023846-131024104(-)$1	258	56	86	12.3219
ee!!==========mmmm==========ee	chr20:2635951-2636258(+)$1	307	14	44	12.5722
==========ddddllldddd333======	chr4:80898653-80898932(-)$1	279	79	109	10.5571
ggggggg!!ccc[ammmma]ccc]gggggg	chr11:3765735-3765980(-)$1	245	88	118	12.0786
::ddddeeeeecccmmmmccc22eeeee]d	chr7:111127185-111127498(-)$1	313	257	287	10.2999
gggg!!ddddddddmmmmdddd]dddd]gg	chr12:133256408-133256673(-)$1	265	157	187	10.7570
[ccc[ccc[a[cccmmmmcccaccc22ccc	chr21:46895292-46895555(+)$1	263	99	129	13.5339
c!!eeeee"""cccmmmmccc22eeeee22	chr1:100733628-100733956(+)$1	328	40	70	13.6247
fffff[bbbb[cccmmmmccc]bb]bbfff	chr11:373120-373379(+)$1	259	17	47	11.2649
""hhhhhhhh[cccmmmmccc]hhhhhhhh	chr16:22337038-22337334(+)$1	296	110	140	11.1341
cccdddd"""cccooooooccc]dddd]cc	chr2:232577071-232577298(+)$1	227	176	206	9.8620
[eeeee[a"""cccmmmmccc22a]eeeee	chr7:72861493-72861789(-)$1	296	76	106	13.8612
dddd[bbccc[cccmmmmccc]ccc]bb]d	chr5:176729299-176729569(-)$1	270	40	70	12.6445
fff[a!!ccc[ccclllccc]ccc22a]ff	chr11:67809172-67809409(+)$1	237	63	93	10.4063
ccc[ccc"""ddddllldddd]ccccccgg	chr19:7711944-7712206(+)$1	262	189	219	10.0085
cc"""dddd"""bbmmmmbb333dddd]cc	chr16:31504792-31505088(-)$1	296	224	254	12.6718
ccc[ccc####cccmmmmccc22cccccc:	chr7:6736862-6737149(-)$1	287	28	58	13.8275
c[ccc[ccc!!cccmmmmccc22ccc]ccc	chr12:57897957-57898185(+)$1	228	54	84	14.7303
d!!bbbb####cccmmmmccc4444bb]bb	chr4:728612-728901(+)$1	289	74	104	12.7725
d:ffffff[bbcccmmmmccc]bb]fffff	chr7:158531652-158531915(-)$1	263	199	229	10.7164
[bb!!dddd!!cccmmmmccc]dddd22bb	chr12:133256010-133256302(-)$1	292	58	88	12.5836
d"""dddd!!acccmmmmccc]a22ddddd	chr12:133365588-133365904(-)$1	316	29	59	13.0253
"ggggggg!!ddddmmmmddddgggggggd	chr19:1012426-1012674(-)$1	248	25	55	11.3384
$a"""iiiiiiiiimmmmiiiiiiiii333	chrX:151127457-151127717(-)$1	260	178	208	12.2194
ggggg[cccddddmmmmdddd4444ccc]g	chr12:133372584-133372868(-)$1	284	159	189	9.8937
cccc[eeeee[cccmmmmccc]eeeee]cc	chr16:22337134-22337433(+)$1	299	244	274	13.4233
ee[ccc[a[bb[bbmmmmbb]bb]a]ccce	chr14:102431110-102431386(+)$1	276	185	215	9.9407
cc!!ffffff[cccmmmmccc22ffffff2	chr8:145742990-145743305(-)$1	315	266	296	13.2814
eee!!dddd!!cccmmmmccc22dddd22e	chr12:133324343-133324644(-)$1	301	260	290	13.5690
###ffffff!!cccmmmmccc22ffffff4	chr1:94341946-94342223(-)$1	277	219	249	13.3238
eee[eeeee!!cccmmmmccc]eeeee]ee	chrX:24226257-24226543(+)$1	286	57	87	13.2157
cc[ggggggg!!bbmmmmbb22gggggggc	chrX:123699117-123699477(-)$1	360	148	178	12.1413
ddd####dddd[ccclllccc]dddddddd	chr10:17495450-17495756(-)$1	306	1	31	9.7777
i!!bb"""ddddbbmmmmbb]dddd4444b	chr11:62297138-62297391(-)$1	253	131	161	9.9263

#otherMatches

#Seq PSSM
AAGGACCAGUACCUGCCCAGGAAACUGGUG	chr17:78310033-78310295(+)$1	262	118	148	12.4068
GCACGUAGGCUCAGGUGGCUGCAGCAGGUG	chr11:61913065-61913317(+)$1	252	131	161	12.8477
UCCGGGAGGCGCCCCCAAGUGGCGCUUGCC	chr14:104145656-104145999(+)$1	343	254	284	11.1633
GCGGCUGGAGCAGCAGAAGCAGACGGUCCA	chr17:79663628-79663889(+)$1	261	76	106	10.5082
UUACGCAUCUUGUCUACGGACUGUUGUGUU	chr8:11667179-11667440(+)$1	261	190	220	13.4828
CCCUAGGGGCACACGGGGGUGGGUCUCACA	chr7:4815227-4815499(+)$1	272	202	232	12.6537
UACAUUAUUCUUUGAAGUUAGCGAAUGAUG	chr7:104731621-104731872(+)$1	251	220	250	14.2655
GGGGGAGCCUGAGUGACAGCUGACGGUGCC	chr22:40804841-40805128(+)$1	287	57	87	13.7984
GUGAACACCCUGGCCUAUCCAUUGGGGAUA	chr4:174254034-174254245(-)$1	211	146	176	10.0062
GGGAUGAGCUAGUUGCUGAGCCAGCAGAUC	chr7:128455695-128456042(+)$1	347	102	132	13.1911
GUAAGUUUAUUUUUAUACAAAAGUAGGAGU	chr6:126332386-126332644(+)$1	258	177	207	11.4230
UUCUGAUGUUCUUCUUUUGAUAGAUAUUUA	chr12:56194247-56194518(-)$1	271	32	62	10.6918
UCUUCUCUCCCCAAGGUGUUUGUGGAGCUG	chr7:150764937-150765222(+)$1	285	8	38	9.1673
GUUUGUGCCCCGGCCCAGGCCUGACGCCGA	chr16:2221481-2221745(+)$1	264	129	159	14.5412
CUGAACCCGGCAGCGACGGCACCAUGUCAG	chr11:129992157-129992475(+)$1	318	194	224	10.2678
CGACGAUGCCUGAUUGAGAUCUUUGGCAUU	chr1:27105546-27105833(+)$1	287	3	33	13.7088
UGGCCACCGAGACCAGCAGGUAUGUGCGCC	chr4:1737356-1737610(+)$1	254	186	216	13.5620
AUCAUAGCUCCAGCUCCCGCUGAGGAUGUG	chr7:148513659-148513942(-)$1	283	102	132	13.0517
CGGCAGCUCGGCAGCCUGCUGCGGGAGCUG	chr19:38894148-38894439(+)$1	291	77	107	10.9427
CGUUUUCCGCGGGUCGUCCCGGGUGAGGAC	chr21:40720247-40720466(-)$1	219	146	176	10.1305
UUCACCAUCCAGUUUUCAAGCCGGUGUGAA	chr9:131023846-131024104(-)$1	258	56	86	12.3219
UGCAGGGAGUGGUACGGGUAUCACUUUCCG	chr20:2635951-2636258(+)$1	307	14	44	12.5722
UCGUCUUGAUGCUCUCUGGGCUUUGUUGAG	chr4:80898653-80898932(-)$1	279	79	109	10.5571
CUUGUCUCCGUAGCUCUUGGUGCUGGACAG	chr11:3765735-3765980(-)$1	245	88	118	12.0786
GCUGAUUUAACUGGUAAUCCACUGUUAAUA	chr7:111127185-111127498(-)$1	313	257	287	10.2999
GGGGUAAAUGAGGCCAGAGUCUACAUUGUU	chr12:133256408-133256673(-)$1	265	157	187	10.7570
AUCCGGAGACUCUGGCAGCGGGCUCGGGGA	chr21:46895292-46895555(+)$1	263	99	129	13.5339
CUGAAUGCACACGUUUUGAUGCAGUAUUAU	chr1:100733628-100733956(+)$1	328	40	70	13.6247
GGGGGAGGGGUGCCGUGAGGCUCCACCCCC	chr11:373120-373379(+)$1	259	17	47	11.2649
CGCGUUGCUGGAGCGGGAGCUGCAGCGGCG	chr16:22337038-22337334(+)$1	296	110	140	11.1341
AGGGGGGUUUGGCAUCUGGGUCUCCCCACC	chr2:232577071-232577298(+)$1	227	176	206	9.8620
ACAGGAACUAUACUGAAGAGUCUGCUUCUG	chr7:72861493-72861789(-)$1	296	76	106	13.8612
CCUGUGGAGGUGACCCUUGUCUUCUGCCUC	chr5:176729299-176729569(-)$1	270	40	70	12.6445
GCGCCUUCCAGAGACGCUUUGUGGUUGAUG	chr11:67809172-67809409(+)$1	237	63	93	10.4063
GUGAggccccggggccgcccccgcccACGC	chr19:7711944-7712206(+)$1	262	189	219	10.0085
UGACCCCAGCUUCCCACAGGUUUCUGGCCA	chr16:31504792-31505088(-)$1	296	224	254	12.6718
GAGACCCUGAAGCCAACCGGCCUGGGCUCA	chr7:6736862-6737149(-)$1	287	28	58	13.8275
CUCAGUGUAAAGUCUGCCGAUCAUGCCCUG	chr12:57897957-57898185(+)$1	228	54	84	14.7303
CGCUCUCCUAACACACCUGUGCUUUGAUGA	chr4:728612-728901(+)$1	289	74	104	12.7725
CAGGUGGGGGCUGGGGUCCCACGCGCCCGC	chr7:158531652-158531915(-)$1	263	199	229	10.7164
AUUAUAGCCAAAUCACUUGGUGGGUUUGAA	chr12:133256010-133256302(-)$1	292	58	88	12.5836
UGAUGGUGGAGGCCUACCGGCGCGACGCCA	chr12:133365588-133365904(-)$1	316	29	59	13.0253
ACGCCUGCCUUGCCUGCUGGCAGUGGGCGG	chr19:1012426-1012674(-)$1	248	25	55	11.3384
AGUUCAGGGCAGUGAAGGCACUGCCCUCAU	chrX:151127457-151127717(-)$1	260	178	208	12.2194
UGCAGAGCAGGGAGCAGUCCCUCGAUGCCC	chr12:133372584-133372868(-)$1	284	159	189	9.8937
CGCCCCAGGGCUGCGCCAGCACCCCUGUGG	chr16:22337134-22337433(+)$1	299	244	274	13.4233
CGGAGGGCAGGGUCGCCAGAGCCAGGCCUC	chr14:102431110-102431386(+)$1	276	185	215	9.9407
CUGACGCGUUCCCUUUACAGGACGACGUGG	chr8:145742990-145743305(-)$1	315	266	296	13.2814
UUUAAUUGGUUAAAAGUCUUUCCCCAAAAG	chr12:133324343-133324644(-)$1	301	260	290	13.5690
GAAUGAGUGCUGAUAAAAAUUUUUACUUGG	chr1:94341946-94342223(-)$1	277	219	249	13.3238
UUUUGUAACUUUCUACUUAGAUGUUGCUGA	chrX:24226257-24226543(+)$1	286	57	87	13.2157
CAUGUGAGGAACGCUCCUGUCAUUCUCAUU	chrX:123699117-123699477(-)$1	360	148	178	12.1413
GCGAGAUCUCCCUGCCAGGCAAGGAGCGCG	chr10:17495450-17495756(-)$1	306	1	31	9.7777
ACCCAAGGUGGACAUUGAUGUUCCAGAUGU	chr11:62297138-62297391(-)$1	253	131	161	9.9263

#DB
((((((((((.(((....)))..)))))).	chr17:78310033-78310295(+)$1	1	118	148	12.4068
((((....((((((....))).)))..)))	chr11:61913065-61913317(+)$1	1	131	161	12.8477
(..((.((((((((....).))))))).))	chr14:104145656-104145999(+)$1	1	254	284	11.1633
(((((((((.(.((....))....).))))	chr17:79663628-79663889(+)$1	1	76	106	10.5082
..(((((....(((....)))...))))).	chr8:11667179-11667440(+)$1	1	190	220	13.4828
((((.(((((.(((....))).)))))..)	chr7:4815227-4815499(+)$1	1	202	232	12.6537
)(((((((((.(((....))).))))))))	chr7:104731621-104731872(+)$1	1	220	250	14.2655
(((((.((((.(((....))).).))).))	chr22:40804841-40805128(+)$1	1	57	87	13.7984
(((....((((((.....)))..)))..))	chr4:174254034-174254245(-)$1	1	146	176	10.0062
(((((..(((.(((....))).)))..)))	chr7:128455695-128456042(+)$1	1	102	132	13.1911
.((..(((((((((....)))))))))..)	chr6:126332386-126332644(+)$1	1	177	207	11.4230
....((((((..((....))..))))))..	chr12:56194247-56194518(-)$1	1	32	62	10.6918
(((((.((((.(((.....))).))))..)	chr7:150764937-150765222(+)$1	1	8	38	9.1673
(((.((((...(((....))).).))).))	chr16:2221481-2221745(+)$1	1	129	159	14.5412
((((....((..((....)).))...))))	chr11:129992157-129992475(+)$1	1	194	224	10.2678
(...((((((.(((....)))...))))))	chr1:27105546-27105833(+)$1	1	3	33	13.7088
.((((((....(((....)))..))).)))	chr4:1737356-1737610(+)$1	1	186	216	13.5620
(((....(((.(((....))))))))))))	chr7:148513659-148513942(-)$1	1	102	132	13.0517
))(((((((.((((....))))..))))))	chr19:38894148-38894439(+)$1	1	77	107	10.9427
((((((((.((((....)))).).))))))	chr21:40720247-40720466(-)$1	1	146	176	10.1305
(((((...((.(((....))).)).)))))	chr9:131023846-131024104(-)$1	1	56	86	12.3219
((..((((((((((....))))))))))))	chr20:2635951-2636258(+)$1	1	14	44	12.5722
((((((((((((((...))))...))))))	chr4:80898653-80898932(-)$1	1	79	109	10.5571
(((((((..(((.(....).))).))))))	chr11:3765735-3765980(-)$1	1	88	118	12.0786
..((((((((((((....)))..))))).)	chr7:111127185-111127498(-)$1	1	257	287	10.2999
((((..((((((((....)))).)))).))	chr12:133256408-133256673(-)$1	1	157	187	10.7570
.(((.(((.(.(((....)))))))..)))	chr21:46895292-46895555(+)$1	1	99	129	13.5339
(..(((((...(((....)))..)))))..	chr1:100733628-100733956(+)$1	1	40	70	13.6247
(((((.((((.(((....))).)).)))))	chr11:373120-373379(+)$1	1	17	47	11.2649
..((((((((.(((....))).))))))))	chr16:22337038-22337334(+)$1	1	110	140	11.1341
(((((((...(((......))).)))).))	chr2:232577071-232577298(+)$1	1	176	206	9.8620
.(((((.(...(((....)))..).)))))	chr7:72861493-72861789(-)$1	1	76	106	13.8612
((((.(((((.(((....))).))).)).)	chr5:176729299-176729569(-)$1	1	40	70	12.6445
(((.(..(((.(((...))).)))..).))	chr11:67809172-67809409(+)$1	1	63	93	10.4063
(((.(((...((((...)))).))))))))	chr19:7711944-7712206(+)$1	1	189	219	10.0085
((...((((...((....))...)))).))	chr16:31504792-31505088(-)$1	1	224	254	12.6718
(((.(((....(((....)))..)))))).	chr7:6736862-6737149(-)$1	1	28	58	13.8275
(.(((.(((..(((....)))..))).)))	chr12:57897957-57898185(+)$1	1	54	84	14.7303
(..((((....(((....)))....)).))	chr4:728612-728901(+)$1	1	74	104	12.7725
).((((((.(((((....))).)).)))))	chr7:158531652-158531915(-)$1	1	199	229	10.7164
.((..((((..(((....))).))))..))	chr12:133256010-133256302(-)$1	1	58	88	12.5836
(...((((..((((....))).)..)))))	chr12:133365588-133365904(-)$1	1	29	59	13.0253
.(((((((..((((....))))))))))))	chr19:1012426-1012674(-)$1	1	25	55	11.3384
.(...(((((((((....)))))))))...	chrX:151127457-151127717(-)$1	1	178	208	12.2194
(((((.(((((((....))))....))).)	chr12:133372584-133372868(-)$1	1	159	189	9.8937
((((.(((((.(((....))).))))).))	chr16:22337134-22337433(+)$1	1	244	274	13.4233
((.(((.(.((.((....)).)).).))))	chr14:102431110-102431386(+)$1	1	185	215	9.9407
((..((((((.(((....)))..)))))).	chr8:145742990-145743305(-)$1	1	266	296	13.2814
(((..((((..(((....)))..))))..)	chr12:133324343-133324644(-)$1	1	260	290	13.5690
...((((((..(((....)))..)))))).	chr1:94341946-94342223(-)$1	1	219	249	13.3238
(((.(((((..(((....))).))))).))	chrX:24226257-24226543(+)$1	1	57	87	13.2157
((.(((((((..((....))..))))))))	chrX:123699117-123699477(-)$1	1	148	178	12.1413
(((....((((.(((...))).))))))))	chr10:17495450-17495756(-)$1	1	1	31	9.7777
(..((...((((((....)).))))....)	chr11:62297138-62297391(-)$1	1	131	161	9.9263

#PSSM
d : 0.24	c : 0.22	g : 0.09	e : 0.09	[ : 0.07	# : 0.05	f : 0.05	h : 0.03	: : 0.03	" : 0.03	= : 0.01	$ : 0.01	i : 0.01	
c : 0.20	d : 0.16	e : 0.11	g : 0.09	! : 0.07	# : 0.05	" : 0.05	f : 0.05	h : 0.03	b : 0.03	: : 0.03	i : 0.01	= : 0.01	[ : 0.01	a : 0.01	
d : 0.18	c : 0.16	! : 0.11	g : 0.11	e : 0.09	" : 0.07	f : 0.07	h : 0.03	b : 0.03	# : 0.03	[ : 0.03	i : 0.01	= : 0.01	
g : 0.12	d : 0.11	c : 0.11	b : 0.09	! : 0.09	[ : 0.09	e : 0.07	# : 0.07	" : 0.07	f : 0.07	h : 0.03	i : 0.01	= : 0.01	
f : 0.14	c : 0.12	g : 0.11	# : 0.09	b : 0.09	e : 0.09	[ : 0.07	! : 0.07	d : 0.05	= : 0.03	" : 0.03	i : 0.01	h : 0.01	a : 0.01	
d : 0.12	f : 0.11	[ : 0.11	e : 0.11	c : 0.11	# : 0.09	g : 0.09	i : 0.05	! : 0.05	" : 0.03	= : 0.03	b : 0.03	h : 0.01	
d : 0.14	c : 0.14	f : 0.11	g : 0.11	e : 0.11	# : 0.09	i : 0.05	b : 0.05	! : 0.03	" : 0.03	= : 0.03	[ : 0.03	h : 0.01	
c : 0.16	d : 0.14	f : 0.11	# : 0.11	e : 0.09	g : 0.07	a : 0.07	" : 0.07	i : 0.05	= : 0.03	! : 0.01	b : 0.01	h : 0.01	
c : 0.16	d : 0.14	f : 0.09	" : 0.09	# : 0.07	e : 0.07	[ : 0.07	g : 0.05	i : 0.05	b : 0.05	! : 0.05	= : 0.03	h : 0.01	
c : 0.12	! : 0.12	d : 0.11	" : 0.11	b : 0.09	f : 0.07	# : 0.07	e : 0.05	i : 0.05	g : 0.03	[ : 0.03	a : 0.03	= : 0.03	h : 0.01	
[ : 0.29	d : 0.16	! : 0.14	c : 0.07	# : 0.07	" : 0.07	a : 0.03	i : 0.03	b : 0.03	g : 0.01	= : 0.01	e : 0.01	
c : 0.64	d : 0.14	[ : 0.05	! : 0.05	i : 0.03	g : 0.01	= : 0.01	" : 0.01	
c : 0.64	b : 0.12	d : 0.12	i : 0.03	g : 0.01	= : 0.01	[ : 0.01	
c : 0.61	b : 0.12	d : 0.09	a : 0.03	i : 0.03	m : 0.03	n : 0.01	= : 0.01	o : 0.01	
m : 0.87	l : 0.05	n : 0.03	o : 0.01	c : 0.01	
m : 0.87	l : 0.07	n : 0.03	o : 0.01	
m : 0.87	l : 0.07	n : 0.03	o : 0.01	
m : 0.83	d : 0.07	n : 0.03	o : 0.01	c : 0.01	l : 0.01	
c : 0.61	b : 0.12	d : 0.12	a : 0.03	i : 0.03	n : 0.01	= : 0.01	o : 0.01	
c : 0.64	b : 0.12	d : 0.12	] : 0.03	i : 0.03	= : 0.01	
c : 0.64	d : 0.12	] : 0.07	i : 0.03	2 : 0.03	g : 0.01	4 : 0.01	= : 0.01	3 : 0.01	
] : 0.33	2 : 0.24	c : 0.09	3 : 0.07	d : 0.07	4 : 0.05	i : 0.03	b : 0.03	g : 0.01	= : 0.01	a : 0.01	
2 : 0.22	c : 0.14	b : 0.09	3 : 0.07	a : 0.07	g : 0.05	4 : 0.05	e : 0.05	i : 0.05	] : 0.05	d : 0.05	f : 0.01	= : 0.01	h : 0.01	
c : 0.20	d : 0.14	e : 0.09	] : 0.09	f : 0.07	3 : 0.07	g : 0.05	4 : 0.05	i : 0.05	b : 0.05	2 : 0.03	= : 0.01	h : 0.01	a : 0.01	
c : 0.20	d : 0.16	g : 0.11	e : 0.11	f : 0.09	] : 0.07	i : 0.05	a : 0.03	= : 0.03	2 : 0.03	4 : 0.03	3 : 0.01	h : 0.01	
d : 0.16	c : 0.14	f : 0.12	e : 0.12	g : 0.11	2 : 0.07	] : 0.05	i : 0.05	= : 0.03	b : 0.03	3 : 0.01	h : 0.01	4 : 0.01	
d : 0.18	f : 0.12	e : 0.12	g : 0.11	c : 0.11	2 : 0.09	i : 0.05	b : 0.05	] : 0.03	= : 0.03	h : 0.01	a : 0.01	4 : 0.01	
] : 0.18	f : 0.14	c : 0.12	d : 0.11	2 : 0.11	e : 0.09	g : 0.09	= : 0.03	i : 0.01	h : 0.01	b : 0.01	3 : 0.01	4 : 0.01	
f : 0.14	c : 0.14	d : 0.12	g : 0.12	e : 0.11	2 : 0.09	b : 0.07	] : 0.05	4 : 0.03	i : 0.01	= : 0.01	h : 0.01	3 : 0.01	
d : 0.20	c : 0.14	e : 0.12	b : 0.11	g : 0.11	f : 0.09	3 : 0.03	4 : 0.03	2 : 0.03	6 : 0.01	i : 0.01	= : 0.01	h : 0.01	: : 0.01	

#score	649.1181262277034
#seq	54
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_CDS_m1_run1.txt

#BEAR
#==========ttttttttttt==========333bb22d	chr19:5893128-5893407(-)$1	279	80	120	29.7980
""bb!!eeeeettttttttttteeeee22bb333bb333c	chr1:16262376-16262649(+)$1	273	33	73	30.5071
eeee[ddddcccssssssssssccc333dddd22eeeee:	chr7:116608286-116608592(+)$1	306	158	198	23.8248
:ccc!!dddduuuuuuuuuuuudddd22ccc:ffffffnn	chr7:98507763-98508028(+)$1	265	163	203	26.6532
eee[ccc[cccuuuuuuuuuuuuccc22ccceeeee333e	chr19:11257826-11258121(-)$1	295	141	181	30.3463
ddd!!bb[avvvvvvvvvvvvva]bb22dddd:::eeeee	chr19:42401913-42402205(+)$1	292	115	155	26.6766

#otherMatches

#Seq PSSM
auuguuuuuauuuuuauuuuuuguagagacaggaucucac	chr19:5893128-5893407(-)$1	279	80	120	29.7980
CCCUCAGCAGCCAGGGAAGGAAGCUGCCAAGACACCAGAU	chr1:16262376-16262649(+)$1	273	33	73	30.5071
ugagacagugucuuacuauguugaccgugcuggacucgaa	chr7:116608286-116608592(+)$1	306	158	198	23.8248
GGACAAGGAAGACAAGCAGACAUUCCAAGUCACAGACUGU	chr7:98507763-98508028(+)$1	265	163	203	26.6532
ACAUCUGUGCCUCAGUCCAUCAUGGCCCCAGUGUGGCCCA	chr19:11257826-11258121(-)$1	295	141	181	30.3463
gucuuggucucuCCUUGUCUCUGUCCCCGGCAUCUGCCUG	chr19:42401913-42402205(+)$1	292	115	155	26.6766

#DB
.((((((((((...........))))))))))...))..)	chr19:5893128-5893407(-)$1	1	80	120	29.7980
..((..(((((...........)))))..))...))...)	chr1:16262376-16262649(+)$1	1	33	73	30.5071
((((.(((((((..........)))...))))..))))).	chr7:116608286-116608592(+)$1	1	158	198	23.8248
.(((..((((............))))..))).((((((..	chr7:98507763-98508028(+)$1	1	163	203	26.6532
(((.(((.(((............)))..))))))))...)	chr19:11257826-11258121(-)$1	1	141	181	30.3463
(((..((.(.............).))..))))...(((((	chr19:42401913-42402205(+)$1	1	115	155	26.6766

#PSSM
e : 0.33	# : 0.16	" : 0.16	: : 0.16	d : 0.16	
e : 0.33	= : 0.16	" : 0.16	c : 0.16	d : 0.16	
e : 0.33	= : 0.16	b : 0.16	c : 0.16	d : 0.16	
= : 0.16	b : 0.16	e : 0.16	c : 0.16	[ : 0.16	! : 0.16	
! : 0.50	= : 0.16	[ : 0.16	c : 0.16	
! : 0.33	= : 0.16	d : 0.16	c : 0.16	b : 0.16	
d : 0.33	= : 0.16	e : 0.16	c : 0.16	b : 0.16	
d : 0.33	[ : 0.33	= : 0.16	e : 0.16	
d : 0.33	= : 0.16	e : 0.16	c : 0.16	a : 0.16	
c : 0.33	= : 0.16	e : 0.16	d : 0.16	v : 0.16	
c : 0.33	= : 0.16	e : 0.16	u : 0.16	v : 0.16	
t : 0.33	u : 0.33	c : 0.16	v : 0.16	
t : 0.33	u : 0.33	s : 0.16	v : 0.16	
t : 0.33	u : 0.33	s : 0.16	v : 0.16	
t : 0.33	u : 0.33	s : 0.16	v : 0.16	
t : 0.33	u : 0.33	s : 0.16	v : 0.16	
t : 0.33	u : 0.33	s : 0.16	v : 0.16	
t : 0.33	u : 0.33	s : 0.16	v : 0.16	
t : 0.33	u : 0.33	s : 0.16	v : 0.16	
t : 0.33	u : 0.33	s : 0.16	v : 0.16	
t : 0.33	u : 0.33	s : 0.16	v : 0.16	
t : 0.33	u : 0.33	s : 0.16	v : 0.16	
= : 0.16	e : 0.16	c : 0.16	d : 0.16	u : 0.16	a : 0.16	
c : 0.33	= : 0.16	e : 0.16	d : 0.16	] : 0.16	
c : 0.33	= : 0.16	e : 0.16	d : 0.16	b : 0.16	
= : 0.16	e : 0.16	3 : 0.16	d : 0.16	c : 0.16	b : 0.16	
2 : 0.50	= : 0.16	e : 0.16	3 : 0.16	
2 : 0.66	= : 0.16	3 : 0.16	
d : 0.33	c : 0.33	= : 0.16	2 : 0.16	
d : 0.33	c : 0.33	= : 0.16	b : 0.16	
d : 0.33	c : 0.33	= : 0.16	b : 0.16	
d : 0.33	= : 0.16	3 : 0.16	: : 0.16	e : 0.16	
3 : 0.33	2 : 0.16	f : 0.16	e : 0.16	: : 0.16	
3 : 0.33	2 : 0.16	f : 0.16	e : 0.16	: : 0.16	
e : 0.33	3 : 0.16	b : 0.16	f : 0.16	: : 0.16	
e : 0.50	b : 0.33	f : 0.16	
3 : 0.33	e : 0.33	b : 0.16	f : 0.16	
3 : 0.33	e : 0.33	2 : 0.16	f : 0.16	
3 : 0.33	e : 0.33	2 : 0.16	n : 0.16	
e : 0.33	d : 0.16	c : 0.16	: : 0.16	n : 0.16	

#score	167.80630504153322
#seq	6
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_transcript_m2_run2.txt

#BEAR
e"""ccc"""ddddmmmmdddd22ccc	chr22:50018737-50019005(-)$1	268	71	98	15.6333
bb"""ddddddddnnnnndddd333dd	chr10:126777034-126777335(-)$1	301	74	101	11.8424
[eeeee####ddddmmmmdddd333ee	chr16:584421-584695(+)$1	274	131	158	15.2391
:ffffff"""ddddmmmmdddd4444f	chr19:1410752-1411058(+)$1	306	75	102	13.2981
d!!bbbb[a[ddddmmmmdddd]a]bb	chr19:941101-941385(+)$1	284	137	164	13.2589
ffff::bb!!ddddmmmmdddd22bbd	chr5:21484287-21484564(+)$1	277	75	102	11.5288
$$$$eeeee[ddddmmmmdddd]eeee	chr22:20000053-20000312(-)$1	259	137	164	12.7328
gggggg####ddddnnnnndddd22gg	chr19:13262212-13262470(+)$1	258	24	51	12.7343
hh"""dddd[ddddmmmmdddddddd]	chr22:19841490-19841848(-)$1	358	7	34	12.7425
$$$$$bb!!ddddoooooodddd22bb	chr17:7746040-7746373(+)$1	333	232	259	11.1328
dddddddd[ddddoooooodddd]ddd	chr11:65201556-65201778(+)$1	222	184	211	10.5524
[eeeee####ddddmmmmdddd22eee	chr17:80865441-80865733(+)$1	292	81	108	14.7145
ffffffa[a[ddddllldddd]a]a]f	chr11:567543-567823(-)$1	280	154	181	11.4659
::ccc$$$$$ddddmmmmdddd4444c	chr1:36349419-36349715(+)$1	296	36	63	12.2442
eeee"""bb[ddddllldddd]bb]ee	chr22:50013320-50013567(-)$1	247	74	101	10.3924
c:dddda!!ddddoooooodddd22a]	chr9:136132866-136133123(-)$1	257	186	213	11.0570
c]bbeeeee!!ddddllldddd22eee	chr19:1411004-1411292(+)$1	288	82	109	11.5312
ee"""dddd[ddddmmmmdddd]dddd	chr10:126789919-126790186(-)$1	267	152	179	13.4361
[eeeee[bb!!ddddllldddd22bbe	chr14:105914450-105914728(+)$1	278	56	83	11.6615
[dddd!!cccddddmmmmdddd]ccc2	chr22:50036157-50036467(-)$1	310	21	48	12.4952
d:ccc[ccc[ddddnnnnndddd]ccc	chr3:128210053-128210318(+)$1	265	163	190	10.8580
fff:eeeee[ddddmmmmdddd22eee	chr16:85683832-85684075(+)$1	243	42	69	12.5949
ddd[adddd[ddddmmmmdddddddd7	chr4:903567-903860(-)$1	293	54	81	12.1139
ccc!!bb[ddddoooooodddd]bbcc	chr10:126783067-126783408(-)$1	341	119	146	10.3085
$$$$eeeee[ddddmmmmddddeeeee	chr12:123869265-123869539(+)$1	274	65	92	12.2447
cc:::dddd[ddddmmmmdddd22ddd	chr2:47402487-47402781(-)$1	294	130	157	11.1030
ffff[a####ddddnnnnndddd333a	chr2:55276188-55276522(-)$1	334	244	271	12.7618
c####bb[a[ddddmmmmdddd]a]bb	chr10:103593253-103593541(-)$1	288	86	113	13.9039
eeggggggg!!cccmmmmccc333ggg	chrX:39954616-39954896(-)$1	280	232	259	9.7777
ff"""dddd[ddddooooooddddddd	chr1:207818828-207819127(+)$1	299	25	52	10.9740
e"""bb####ddddlllddddbb22ee	chr17:80676114-80676397(+)$1	283	26	53	12.5355
"""bb[ccc[ddddmmmmdddd22ccc	chr4:904128-904416(-)$1	288	106	133	14.3557
gg!!eeeeeddddoooooodddd]eee	chr17:80080477-80080883(-)$1	406	37	64	11.1861
dddd####a[ddddmmmmdddd]a444	chr16:89034364-89034649(-)$1	285	25	52	14.3554
gggg[ccc!!ddddmmmmdddd22ccc	chr22:48204418-48204692(+)$1	274	197	224	14.8223
dda[ccca[ddddoooooodddd22a]	chr16:88520581-88520909(+)$1	328	44	71	12.0761
::ggggggg[ddddmmmmdddd]gggg	chr17:7477140-7477431(+)$1	291	11	38	11.5549
ggggg[bb!!ddddmmmmdddd66666	chr20:60623526-60623833(-)$1	307	69	96	12.0769
[eeeee!!bbddddmmmmdddd]bb22	chr19:18531615-18531932(+)$1	317	190	217	11.6223
!ddddccc!!ddddllldddd333ccc	chr22:19711795-19712083(+)$1	288	35	62	12.9399
ddd[ccc"""ddddnnnnndddd22cc	chr1:2224519-2224846(+)$1	327	13	40	13.0218
ddffffff!!ddddmmmmdddd22fff	chr4:2409741-2410072(-)$1	331	212	239	13.4398
bb!!eeeee[ddddnnnnndddd333e	chr16:85673076-85673376(+)$1	300	147	174	12.3220
dd"""dddd!!ddddllldddd22ddd	chr6:36461811-36462112(-)$1	301	107	134	12.8319
dd[bb$$$$$ddddmmmmdddd333bb	chr19:947028-947360(+)$1	332	70	97	13.7322
b"""ccc"""ddddmmmmdddd4444c	chr22:19787439-19787743(-)$1	304	53	80	15.5440
==========ddddmmmmddddfffff	chr9:94711178-94711541(-)$1	363	124	151	12.4050
hhhhhhh"""ddddllldddd4444hh	chr19:34881915-34882149(+)$1	234	20	47	11.4010
#dddd[ccc[ddddnnnnndddd]ccc	chr12:30907404-30907744(-)$1	340	101	128	11.4558
=!!eeeee!!ddddmmmmdddd]eeee	chr16:87773812-87774106(-)$1	294	71	98	13.7040
bb!!ccc####ddddlllddddccc22	chr16:88840836-88841136(-)$1	300	93	120	11.6956
ddd[a[a!!ddddnnnnndddd22a]a	chr16:89027787-89028072(-)$1	285	42	69	12.4265
ddd!!ccc!!ddddmmmmdddd66666	chr16:89724920-89725218(+)$1	298	80	107	12.7380

#otherMatches

#Seq PSSM
AAACGGUUUAUGGCUUGGGUUAGUACU	chr22:50018737-50019005(-)$1	268	71	98	15.6333
CCAACGGAAACACUUACUGUGUAAUUU	chr10:126777034-126777335(-)$1	301	74	101	11.8424
UCCUGUCCUUGGGGUCAUCUCCUCCAC	chr16:584421-584695(+)$1	274	131	158	15.2391
AAUGGUAAGACAGGGACACCUGGAAAU	chr19:1410752-1411058(+)$1	306	75	102	13.2981
CGUGCGUGCGAGUGUGCACGCUGGGGC	chr19:941101-941385(+)$1	284	137	164	13.2589
GCAGGAUCACGGAAAACCUUCUUAGAG	chr5:21484287-21484564(+)$1	277	75	102	11.5288
UCCCAUGGCAUGGGUAGGCCCAGGCCA	chr22:20000053-20000312(-)$1	259	137	164	12.7328
GUCCCAAGGCCUGAGAAGAUCAGUGUG	chr19:13262212-13262470(+)$1	258	24	51	12.7343
UUGGGGCUCCUGGGUCUCCCCAGAGCA	chr22:19841490-19841848(-)$1	358	7	34	12.7425
AGUGUACAGGAAGUUUUGUCUUCAAGU	chr17:7746040-7746373(+)$1	333	232	259	11.1328
GAAAGGUGACGACAACAACGUUGGCAC	chr11:65201556-65201778(+)$1	222	184	211	10.5524
UCCGAGUGUACUUGGGGUUAGGGUCUU	chr17:80865441-80865733(+)$1	292	81	108	14.7145
AGACAGCGGGUGGAUCCUCCAGCAGCC	chr11:567543-567823(-)$1	280	154	181	11.4659
UAGGCUAAUGUCUCUUGGGAGAAGGCG	chr1:36349419-36349715(+)$1	296	36	63	12.2442
aaaaacaaagucagguccugaguucuu	chr22:50013320-50013567(-)$1	247	74	101	10.3924
AUGUGCAGUAGGAAGGAUGUCCUCGUG	chr9:136132866-136133123(-)$1	257	186	213	11.0570
GCACCUGGCAAGAUUGUUGGUCAGGCC	chr19:1411004-1411292(+)$1	288	82	109	11.5312
GCCAAGGCGAGGUGCUGGCACCAUGCU	chr10:126789919-126790186(-)$1	267	152	179	13.4361
AGUGGGAGUGAGGGCACAGCCUGGGCC	chr14:105914450-105914728(+)$1	278	56	83	11.6615
CAGCUCAGGCccuugagcagggugcuc	chr22:50036157-50036467(-)$1	310	21	48	12.4952
CAUUUGCUAAGGGACUACCUUCCAUAG	chr3:128210053-128210318(+)$1	265	163	190	10.8580
UCCAGAGGCCGCCCCCCAGGGCCAGCC	chr16:85683832-85684075(+)$1	243	42	69	12.5949
CCCUCCAGCGCCUGUUGCCAGGGUUGU	chr4:903567-903860(-)$1	293	54	81	12.1139
uguccugugcaucauacaauguucaac	chr10:126783067-126783408(-)$1	341	119	146	10.3085
UCUCGCGGGCGCGGUCGUUCGCCCCGC	chr12:123869265-123869539(+)$1	274	65	92	12.2447
GCAAUACACAUCUUGUUAGGGAAAGUG	chr2:47402487-47402781(-)$1	294	130	157	11.1030
CGCAGUGAAGGGAGAGCGCCUCCAGUG	chr2:55276188-55276522(-)$1	334	244	271	12.7618
UGGGACAGGGAUAUGACUGUAUGUGUG	chr10:103593253-103593541(-)$1	288	86	113	13.9039
UUCCUGUGGCACUGGAAACGGACACCG	chrX:39954616-39954896(-)$1	280	232	259	9.7777
GGGAACCACGCAGAAGCUUGUUUGGUG	chr1:207818828-207819127(+)$1	299	25	52	10.9740
GGAAAGGAAAGGCCGCUGGCUCUGACU	chr17:80676114-80676397(+)$1	283	26	53	12.5355
GGGGCAUGUGUCCAGAAAUGGAGGGCG	chr4:904128-904416(-)$1	288	106	133	14.3557
uucaauccuucccggcuuggggagagg	chr17:80080477-80080883(-)$1	406	37	64	11.1861
AGGGCCCCUGGCAGUCCCCUGUGGUCC	chr16:89034364-89034649(-)$1	285	25	52	14.3554
UUGGUACUGGCUGCGGAAGCAGGGGGU	chr22:48204418-48204692(+)$1	274	197	224	14.8223
GCCCGCGCCCACCCCCACCGGUGCCGU	chr16:88520581-88520909(+)$1	328	44	71	12.0761
CGUGGGGGGAAGGGGAUGUCCUACCCU	chr17:7477140-7477431(+)$1	291	11	38	11.5549
CAGGGACCGAGGUGGGCACGCCAGGAG	chr20:60623526-60623833(-)$1	307	69	96	12.0769
UGGGUCAGCAGGGAGGGGUCCCAUGAG	chr19:18531615-18531932(+)$1	317	190	217	11.6223
UGCGCUGCUGGGCCUUGGGCUGCUGCA	chr22:19711795-19712083(+)$1	288	35	62	12.9399
UGAACCUGAAGUCCCACAAGGACGGAG	chr1:2224519-2224846(+)$1	327	13	40	13.0218
GUGGCCUUGAGGCCUGGAGGCCAGGGG	chr4:2409741-2410072(-)$1	331	212	239	13.4398
GCGUGGAGCCAGGCCCUGUGCUUCCAG	chr16:85673076-85673376(+)$1	300	147	174	12.3220
UUGGAUUUUAACCUCUUAGAGGAAGAA	chr6:36461811-36462112(-)$1	301	107	134	12.8319
CUGAGAUUCUGCAUUGAAAUGUUUGCU	chr19:947028-947360(+)$1	332	70	97	13.7322
CGGAUUGAUGAAUUGAAAAGUUAAAGC	chr22:19787439-19787743(-)$1	304	53	80	15.5440
UGGCCGCGCCGGGGGGACCCCCGGGAC	chr9:94711178-94711541(-)$1	363	124	151	12.4050
AUGUCUGAGGAGGUAGCACCUGGCACA	chr19:34881915-34882149(+)$1	234	20	47	11.4010
GAGGCGGCUGACCCGGCGAGGGUGGGC	chr12:30907404-30907744(-)$1	340	101	128	11.4558
CGGCUGCUCCUGGGAACCCCCAAAGUA	chr16:87773812-87774106(-)$1	294	71	98	13.7040
GGCUUCCUUUUCAGGCUUCCUGGGACC	chr16:88840836-88841136(-)$1	300	93	120	11.6956
CCAGUGCUGAGUGUCGGUUACUAUGGA	chr16:89027787-89028072(-)$1	285	42	69	12.4265
UCUUAGUUGAAAACAUAAGUUUAAUGA	chr16:89724920-89725218(+)$1	298	80	107	12.7380

#DB
(...(((...((((....))))..)))	chr22:50018737-50019005(-)$1	1	71	98	15.6333
((...((((((((.....))))...))	chr10:126777034-126777335(-)$1	1	74	101	11.8424
.(((((....((((....))))...))	chr16:584421-584695(+)$1	1	131	158	15.2391
.((((((...((((....))))....)	chr19:1410752-1411058(+)$1	1	75	102	13.2981
(..((((.(.((((....)))).).))	chr19:941101-941385(+)$1	1	137	164	13.2589
))))..((..((((....))))..))(	chr5:21484287-21484564(+)$1	1	75	102	11.5288
....(((((.((((....)))).))))	chr22:20000053-20000312(-)$1	1	137	164	12.7328
((((((....((((.....))))..))	chr19:13262212-13262470(+)$1	1	24	51	12.7343
((...((((.((((....)))))))).	chr22:19841490-19841848(-)$1	1	7	34	12.7425
.....((..((((......))))..))	chr17:7746040-7746373(+)$1	1	232	259	11.1328
))))((((.((((......)))).)))	chr11:65201556-65201778(+)$1	1	184	211	10.5524
.(((((....((((....))))..)))	chr17:80865441-80865733(+)$1	1	81	108	14.7145
(((((((.(.((((...)))).).).)	chr11:567543-567823(-)$1	1	154	181	11.4659
..(((.....((((....))))....)	chr1:36349419-36349715(+)$1	1	36	63	12.2442
((((...((.((((...)))).)).))	chr22:50013320-50013567(-)$1	1	74	101	10.3924
).(((((..((((......))))..).	chr9:136132866-136133123(-)$1	1	186	213	11.0570
).))(((((..((((...))))..)))	chr19:1411004-1411292(+)$1	1	82	109	11.5312
((...((((.((((....)))).))))	chr10:126789919-126790186(-)$1	1	152	179	13.4361
.(((((.((..((((...))))..)))	chr14:105914450-105914728(+)$1	1	56	83	11.6615
.((((..(((((((....)))).))).	chr22:50036157-50036467(-)$1	1	21	48	12.4952
).(((.(((.((((.....)))).)))	chr3:128210053-128210318(+)$1	1	163	190	10.8580
))).(((((.((((....))))..)))	chr16:85683832-85684075(+)$1	1	42	69	12.5949
(((.(((((.((((....)))))))).	chr4:903567-903860(-)$1	1	54	81	12.1139
(((..((.((((......)))).))))	chr10:126783067-126783408(-)$1	1	119	146	10.3085
....(((((.((((....)))))))))	chr12:123869265-123869539(+)$1	1	65	92	12.2447
))...((((.((((....))))..)))	chr2:47402487-47402781(-)$1	1	130	157	11.1030
((((.(....((((.....))))...)	chr2:55276188-55276522(-)$1	1	244	271	12.7618
(....((.(.((((....)))).).))	chr10:103593253-103593541(-)$1	1	86	113	13.9039
))(((((((..(((....)))...)))	chrX:39954616-39954896(-)$1	1	232	259	9.7777
((...((((.((((......)))))))	chr1:207818828-207819127(+)$1	1	25	52	10.9740
(...((....((((...))))))..))	chr17:80676114-80676397(+)$1	1	26	53	12.5355
...((.(((.((((....))))..)))	chr4:904128-904416(-)$1	1	106	133	14.3557
((..(((((((((......)))).)))	chr17:80080477-80080883(-)$1	1	37	64	11.1861
((((....(.((((....)))).)...	chr16:89034364-89034649(-)$1	1	25	52	14.3554
((((.(((..((((....))))..)))	chr22:48204418-48204692(+)$1	1	197	224	14.8223
(((.((((.((((......))))..).	chr16:88520581-88520909(+)$1	1	44	71	12.0761
..(((((((.((((....)))).))))	chr17:7477140-7477431(+)$1	1	11	38	11.5549
(((((.((..((((....)))).....	chr20:60623526-60623833(-)$1	1	69	96	12.0769
.(((((..((((((....)))).))..	chr19:18531615-18531932(+)$1	1	190	217	11.6223
.(((((((..((((...))))...)))	chr22:19711795-19712083(+)$1	1	35	62	12.9399
(((.(((...((((.....))))..))	chr1:2224519-2224846(+)$1	1	13	40	13.0218
))((((((..((((....))))..)))	chr4:2409741-2410072(-)$1	1	212	239	13.4398
((..(((((.((((.....))))...)	chr16:85673076-85673376(+)$1	1	147	174	12.3220
((...((((..((((...))))..)))	chr6:36461811-36462112(-)$1	1	107	134	12.8319
((.((.....((((....))))...))	chr19:947028-947360(+)$1	1	70	97	13.7322
(...(((...((((....))))....)	chr22:19787439-19787743(-)$1	1	53	80	15.5440
))))))))))((((....))))(((((	chr9:94711178-94711541(-)$1	1	124	151	12.4050
(((((((...((((...))))....))	chr19:34881915-34882149(+)$1	1	20	47	11.4010
.((((.(((.((((.....)))).)))	chr12:30907404-30907744(-)$1	1	101	128	11.4558
(..(((((..((((....)))).))))	chr16:87773812-87774106(-)$1	1	71	98	13.7040
((..(((....((((...)))))))..	chr16:88840836-88841136(-)$1	1	93	120	11.6956
(((.(.(..((((.....))))..).)	chr16:89027787-89028072(-)$1	1	42	69	12.4265
(((..(((..((((....)))).....	chr16:89724920-89725218(+)$1	1	80	107	12.7380

#PSSM
d : 0.22	e : 0.09	[ : 0.09	f : 0.09	c : 0.09	b : 0.07	g : 0.07	: : 0.05	$ : 0.05	h : 0.03	= : 0.03	" : 0.01	! : 0.01	# : 0.01	
d : 0.24	e : 0.13	f : 0.11	" : 0.07	g : 0.07	: : 0.07	b : 0.05	$ : 0.05	! : 0.03	h : 0.03	c : 0.03	] : 0.01	# : 0.01	= : 0.01	
d : 0.18	" : 0.16	f : 0.11	e : 0.09	! : 0.09	g : 0.09	$ : 0.05	c : 0.05	b : 0.01	: : 0.01	# : 0.01	a : 0.01	[ : 0.01	= : 0.01	h : 0.01	
" : 0.15	e : 0.11	d : 0.11	f : 0.09	g : 0.09	! : 0.09	b : 0.07	[ : 0.07	$ : 0.05	c : 0.03	: : 0.03	# : 0.01	= : 0.01	h : 0.01	
e : 0.20	c : 0.13	" : 0.11	d : 0.09	b : 0.07	g : 0.07	f : 0.05	: : 0.03	a : 0.03	! : 0.03	[ : 0.03	# : 0.03	$ : 0.01	= : 0.01	h : 0.01	
e : 0.20	d : 0.16	c : 0.15	b : 0.09	[ : 0.09	f : 0.05	g : 0.05	$ : 0.03	: : 0.01	" : 0.01	! : 0.01	a : 0.01	# : 0.01	= : 0.01	h : 0.01	
c : 0.20	d : 0.15	e : 0.13	# : 0.11	b : 0.11	a : 0.05	f : 0.03	$ : 0.03	! : 0.03	g : 0.03	" : 0.01	[ : 0.01	= : 0.01	h : 0.01	
d : 0.15	# : 0.13	e : 0.13	c : 0.13	" : 0.09	[ : 0.07	b : 0.07	! : 0.07	$ : 0.03	g : 0.03	a : 0.01	f : 0.01	= : 0.01	
! : 0.18	d : 0.15	# : 0.11	e : 0.11	" : 0.09	a : 0.07	c : 0.07	b : 0.05	[ : 0.03	$ : 0.03	g : 0.03	= : 0.01	
[ : 0.33	! : 0.20	d : 0.15	# : 0.11	" : 0.09	$ : 0.03	c : 0.01	b : 0.01	= : 0.01	
d : 0.90	! : 0.07	# : 0.01	
d : 0.98	c : 0.01	
d : 0.96	o : 0.01	c : 0.01	
d : 0.83	o : 0.11	n : 0.03	c : 0.01	
m : 0.54	n : 0.15	o : 0.13	l : 0.09	d : 0.07	
m : 0.54	l : 0.16	n : 0.15	o : 0.13	
m : 0.54	l : 0.16	n : 0.15	o : 0.13	
m : 0.54	n : 0.15	o : 0.13	d : 0.09	l : 0.07	
d : 0.75	n : 0.11	o : 0.11	c : 0.01	
d : 0.96	c : 0.01	o : 0.01	
d : 0.98	c : 0.01	
d : 0.88	] : 0.03	3 : 0.03	b : 0.01	4 : 0.01	
d : 0.26	2 : 0.22	] : 0.18	3 : 0.09	4 : 0.07	b : 0.03	6 : 0.03	a : 0.01	e : 0.01	f : 0.01	c : 0.01	
2 : 0.33	3 : 0.13	] : 0.09	4 : 0.07	d : 0.07	a : 0.05	e : 0.05	b : 0.05	c : 0.03	6 : 0.03	g : 0.01	f : 0.01	
c : 0.15	e : 0.13	d : 0.13	2 : 0.11	3 : 0.09	4 : 0.09	b : 0.07	] : 0.05	a : 0.03	g : 0.03	6 : 0.03	f : 0.03	
e : 0.18	c : 0.16	d : 0.15	b : 0.11	4 : 0.07	g : 0.05	] : 0.03	a : 0.03	3 : 0.03	6 : 0.03	2 : 0.03	f : 0.03	h : 0.01	
e : 0.22	c : 0.18	d : 0.13	f : 0.07	b : 0.07	g : 0.05	] : 0.05	2 : 0.05	a : 0.03	6 : 0.03	7 : 0.01	4 : 0.01	h : 0.01	

#score	660.5790628674243
#seq	53
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_CDS_m2_run1.txt

#BEAR
!!bb[ddddnnnnndddd]bb2	chr21:45879948-45880256(+)$1	308	133	155	13.6443
dddd!!cccnnnnnccc22ddd	chr7:116608286-116608592(+)$1	306	203	225	13.4475
ccbbddddannnnna]dddd]b	chr7:98507763-98508028(+)$1	265	137	159	12.8312
cc####cccnnnnncccccc:F	chr19:5893128-5893407(-)$1	279	250	272	13.0825
d[a!!ddddnnnnndddd22ad	chr11:2156541-2156767(-)$1	226	38	60	14.0876
fffff[cccnnnnnccc]ffff	chr19:11257826-11258121(-)$1	295	191	213	12.5011
iiiiiiiiinnnnniiiiiiii	chr1:16262376-16262649(+)$1	273	231	253	12.2143

#otherMatches

#Seq PSSM
AUCUUGUGACCUCUUUACUGGC	chr21:45879948-45880256(+)$1	308	133	155	13.6443
gggcucaagcaauccuucugcc	chr7:116608286-116608592(+)$1	306	203	225	13.4475
CCUCCCUUCGAGAAGCAAGGAG	chr7:98507763-98508028(+)$1	265	137	159	12.8312
UCGAAGUCCUCUCUGGAGAGAG	chr19:5893128-5893407(-)$1	279	250	272	13.0825
AUGCUGGUGCUUCUCACCUUCU	chr11:2156541-2156767(-)$1	226	38	60	14.0876
CUGGACAGCACCCAGCUCUCCA	chr19:11257826-11258121(-)$1	295	191	213	12.5011
UGGGGUGCAGAUUGUGCACUCC	chr1:16262376-16262649(+)$1	273	231	253	12.2143

#DB
..((.((((.....)))).)).	chr21:45879948-45880256(+)$1	1	133	155	13.6443
((((..(((.....)))..)))	chr7:116608286-116608592(+)$1	1	203	225	13.4475
))(((((((.....).)))).)	chr7:98507763-98508028(+)$1	1	137	159	12.8312
((....(((.....)))))).)	chr19:5893128-5893407(-)$1	1	250	272	13.0825
(.(..((((.....))))..))	chr11:2156541-2156767(-)$1	1	38	60	14.0876
(((((.(((.....))).))))	chr19:11257826-11258121(-)$1	1	191	213	12.5011
(((((((((.....))))))))	chr1:16262376-16262649(+)$1	1	231	253	12.2143

#PSSM
d : 0.28	c : 0.28	! : 0.14	f : 0.14	i : 0.14	
c : 0.28	! : 0.14	d : 0.14	[ : 0.14	f : 0.14	i : 0.14	
b : 0.28	d : 0.14	# : 0.14	a : 0.14	f : 0.14	i : 0.14	
b : 0.28	d : 0.14	# : 0.14	! : 0.14	f : 0.14	i : 0.14	
! : 0.28	[ : 0.14	d : 0.14	# : 0.14	f : 0.14	i : 0.14	
d : 0.42	! : 0.14	# : 0.14	[ : 0.14	i : 0.14	
d : 0.42	c : 0.42	i : 0.14	
d : 0.42	c : 0.42	i : 0.14	
c : 0.42	d : 0.28	a : 0.14	i : 0.14	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
c : 0.42	d : 0.28	a : 0.14	i : 0.14	
c : 0.42	d : 0.28	] : 0.14	i : 0.14	
d : 0.42	c : 0.42	i : 0.14	
d : 0.42	2 : 0.14	c : 0.14	] : 0.14	i : 0.14	
2 : 0.28	] : 0.14	d : 0.14	c : 0.14	f : 0.14	i : 0.14	
d : 0.28	b : 0.14	c : 0.14	2 : 0.14	f : 0.14	i : 0.14	
b : 0.14	d : 0.14	] : 0.14	: : 0.14	a : 0.14	f : 0.14	i : 0.14	
d : 0.28	2 : 0.14	b : 0.14	F : 0.14	f : 0.14	i : 0.14	

#score	91.80886279665714
#seq	7
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF215XPR_WDR3_transcript_m3_run1.txt

#BEAR
fff"""ccc[ffffffooooooffffff333c	chr17:18965249-18965542(+)$1	293	58	90	14.5776
[a[bb!!ggggggg!!ccclllccc22ggggg	chr19:18548147-18548394(-)$1	247	3	35	11.2955
hhh"""a[ddddccc!!bblllbb22ccc]dd	chr20:26189853-26190144(-)$1	291	145	177	11.0083
ggggggg"""iiiiiiiiillliiiiiiiii]	chr7:98479277-98479528(+)$1	251	14	46	10.3444
::ccc####a[ffffffnnnnnffffff]a33	chr11:93454803-93455053(+)$1	250	6	38	15.7464
dddda[eeeeeffffffnnnnnffffff]eee	chr17:19091288-19091524(+)$1	236	200	232	15.8158
cc]bb::ddddffffffnnnnnffffff]ddd	chr17:19091324-19091534(+)$1	210	164	196	17.5692
cc]bb::ddddffffffnnnnnffffff]ddd	chr17:19091334-19091541(+)$1	207	154	186	17.5692
cc]bb::ddddffffffnnnnnffffff]ddd	chr17:19093316-19093590(-)$1	274	192	224	17.5692

#otherMatches

#Seq PSSM
aagagagguagcguuuucuccugagcgugaag	chr17:18965249-18965542(+)$1	293	58	90	14.5776
GUGGUGGGUAGGGAGGCUUGGUGGGAGUCCUU	chr19:18548147-18548394(-)$1	247	3	35	11.2955
GGGUUCGAGGCGGUUGAGUGAGACGAGACGCG	chr20:26189853-26190144(-)$1	291	145	177	11.0083
UCAUUUUCCUUUUCUCUACCUUGUAGAGAAGC	chr7:98479277-98479528(+)$1	251	14	46	10.3444
AAACAAUAAGGGCAUAUGUCUGgugugugugu	chr11:93454803-93455053(+)$1	250	6	38	15.7464
ugaucguucuucucuccguauuggggagugag	chr17:19091288-19091524(+)$1	236	200	232	15.8158
ugaucguucuucucuccguauuggggagugag	chr17:19091324-19091534(+)$1	210	164	196	17.5692
ugaucguucuucucuccguauuggggagugag	chr17:19091334-19091541(+)$1	207	154	186	17.5692
ugaucguucuucucuccguauuggggagugag	chr17:19093316-19093590(-)$1	274	192	224	17.5692

#DB
(((...(((.((((((......))))))...)	chr17:18965249-18965542(+)$1	1	58	90	14.5776
.(.((..(((((((..(((...)))..)))))	chr19:18548147-18548394(-)$1	1	3	35	11.2955
(((...(.(((((((..((...))..))).))	chr20:26189853-26190144(-)$1	1	145	177	11.0083
(((((((...(((((((((...))))))))).	chr7:98479277-98479528(+)$1	1	14	46	10.3444
..(((....(.((((((.....)))))).)..	chr11:93454803-93455053(+)$1	1	6	38	15.7464
))))(.(((((((((((.....)))))).)))	chr17:19091288-19091524(+)$1	1	200	232	15.8158
)).))..((((((((((.....)))))).)))	chr17:19091324-19091534(+)$1	1	164	196	17.5692
)).))..((((((((((.....)))))).)))	chr17:19091334-19091541(+)$1	1	154	186	17.5692
)).))..((((((((((.....)))))).)))	chr17:19093316-19093590(-)$1	1	192	224	17.5692

#PSSM
c : 0.33	f : 0.11	[ : 0.11	h : 0.11	g : 0.11	: : 0.11	d : 0.11	
c : 0.33	f : 0.11	a : 0.11	h : 0.11	g : 0.11	: : 0.11	d : 0.11	
] : 0.33	f : 0.11	[ : 0.11	h : 0.11	g : 0.11	c : 0.11	d : 0.11	
b : 0.44	" : 0.22	g : 0.11	c : 0.11	d : 0.11	
b : 0.44	" : 0.22	g : 0.11	c : 0.11	a : 0.11	
: : 0.33	" : 0.22	! : 0.11	g : 0.11	# : 0.11	[ : 0.11	
: : 0.33	c : 0.11	! : 0.11	a : 0.11	g : 0.11	# : 0.11	e : 0.11	
d : 0.33	c : 0.11	g : 0.11	[ : 0.11	" : 0.11	# : 0.11	e : 0.11	
d : 0.44	c : 0.11	g : 0.11	" : 0.11	# : 0.11	e : 0.11	
d : 0.44	[ : 0.11	g : 0.11	" : 0.11	a : 0.11	e : 0.11	
d : 0.44	f : 0.11	g : 0.11	i : 0.11	[ : 0.11	e : 0.11	
f : 0.66	g : 0.11	d : 0.11	i : 0.11	
f : 0.66	g : 0.11	c : 0.11	i : 0.11	
f : 0.66	g : 0.11	c : 0.11	i : 0.11	
f : 0.66	! : 0.11	c : 0.11	i : 0.11	
f : 0.66	! : 0.22	i : 0.11	
f : 0.55	o : 0.11	c : 0.11	! : 0.11	i : 0.11	
n : 0.55	o : 0.11	c : 0.11	b : 0.11	i : 0.11	
n : 0.55	o : 0.11	c : 0.11	b : 0.11	i : 0.11	
n : 0.55	l : 0.33	o : 0.11	
n : 0.55	l : 0.33	o : 0.11	
n : 0.55	l : 0.33	o : 0.11	
f : 0.66	c : 0.11	b : 0.11	i : 0.11	
f : 0.66	c : 0.11	b : 0.11	i : 0.11	
f : 0.66	c : 0.11	2 : 0.11	i : 0.11	
f : 0.66	2 : 0.22	i : 0.11	
f : 0.66	2 : 0.11	c : 0.11	i : 0.11	
f : 0.66	g : 0.11	c : 0.11	i : 0.11	
] : 0.55	3 : 0.11	g : 0.11	c : 0.11	i : 0.11	
d : 0.33	3 : 0.11	g : 0.11	] : 0.11	i : 0.11	a : 0.11	e : 0.11	
d : 0.44	3 : 0.22	g : 0.11	i : 0.11	e : 0.11	
d : 0.44	c : 0.11	g : 0.11	] : 0.11	3 : 0.11	e : 0.11	

#score	131.49622872084439
#seq	9
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_transcript_m2_run2.txt

#BEAR
iiiiiii$$$$$ddddooooooddddiiiiiiiii444	chr5:34938899-34939166(+)$1	267	46	84	15.6285
======!!a####cccpppppppccc4444a22=====	chr12:14578030-14578275(+)$1	245	137	175	11.6553
a[a[ggggggg[ddddnnnnndddd22ggggggg]a]a	chr16:88643554-88643861(+)$1	307	54	92	14.1796
ffffff!!a[eeeeeooooooeeeee]a333ffffff:	chr16:9185787-9186087(+)$1	300	73	111	11.2670
ffeeeee[ccc!!cccoooooocccccceeeee22fff	chr1:93307229-93307454(+)$1	225	87	125	12.4807
===========!!cccooooooccc22===========	chr10:1055399-1055620(+)$1	221	101	139	19.0047
======lll==========4444dddd==========r	chr9:139302176-139302432(-)$1	256	32	70	11.9119
[ccc####dddd[cccoooooocccdddd4444ccccc	chr17:27844421-27844705(+)$1	284	28	66	14.2515
ccc[bb!!cccddddoooooodddd22ccc22bbcccD	chr17:56585484-56585731(-)$1	247	161	199	12.6207
!!a[bb!!dddd[aooooooadddd22bb]accc22dd	chr19:6744938-6745194(+)$1	256	106	144	12.3796
===[ccc[addddddddnnnnndddd]dddd333a]cc	chrX:48663790-48664029(+)$1	239	170	208	12.6708
::::iiiiiiiiicccooooooccc22iiiiiiiii:e	chr2:102441733-102441991(+)$1	258	34	72	11.5182
===========zzzzzzzzzzzzzzzzz==========	chr2:232576499-232576726(+)$1	227	82	120	13.3104
[ffffff[ccc[ddddoooooodddd22ccc]ffffff	chr19:47767932-47768166(+)$1	234	26	64	13.9777
=========^^^^^^^^^^^^^^^^^^==========:	chr13:34405312-34405584(+)$1	272	28	66	11.8849
a[ccc[iiiiiiiiirrrrrrrrriiiiiiiiiccca]	chr9:101611278-101611559(+)$1	281	14	52	12.5641
#ccc!!ccc[a!!cccmmmmccc]a]ccc22ccc22hh	chr6:170059451-170059715(-)$1	264	29	67	11.3541
!ggggggg[ccc[addddllldddd]a]ccc22ggggg	chr9:88593123-88593392(+)$1	269	64	102	13.0456
cc]bb]ggggggg]dddd4444ccc333iiiiiiiiib	chr2:85769385-85769597(+)$1	212	113	151	11.5105
b[ccc!!dddd[ddddnnnnndddd]ddddccc]bb]g	chr2:136529888-136530133(+)$1	245	139	177	11.4668
ccc"""ddddeeeeeooooooeeeee]dddd4444ccc	chr3:32587240-32587471(-)$1	231	88	126	12.3543
gggggg[dddd!!cccooooooccc]dddd]ggggggg	chr3:138553442-138553666(-)$1	224	75	113	14.7527
=========="""cccqqqqqqqqccc4444=======	chr16:2482859-2483135(+)$1	276	10	48	12.8385
gggg"""ccc!!acccooooooccc]a22ccc333ggg	chrX:53409918-53410154(-)$1	236	148	186	16.0719
==============[bbmmmmbb===============	chr15:63954041-63954319(-)$1	278	50	88	13.5956
f[a"""dddd####cccnnnnnccc333dddd>>>>>>	chr10:120809221-120809492(-)$1	271	101	139	11.5647
iiiiiiiii"""bb[cccmmmmcccbbiiiiiiiii33	chr19:6383222-6383460(-)$1	238	151	189	12.4779
cffffff"""ccc[cccnnnnnccc22ccc]ffffff]	chr3:38420686-38420936(+)$1	250	103	141	11.8106
hhhhhhhh[ddddcccooooooccc333ddddhhhhhh	chr11:74500592-74500845(+)$1	253	165	203	12.1766
gggg[ggggggg[ddddmmmmdddd]ggggggg]gggg	chr10:129910302-129910550(-)$1	248	186	224	12.7153
""bb[ccc!!a[ddddoooooodddd]acccbbdddd2	chr20:62575373-62575630(-)$1	257	112	150	13.8708
ii!!a[==========lll==========a]iiiiiii	chr8:117861139-117861369(-)$1	230	82	120	14.0223
[abb"""ccca[a[bboooooobb]a]a]ccc333bb]	chr20:36640622-36640842(-)$1	220	42	80	14.2991
==========^^^^^^^^^^^^^^^^^^^=========	chr17:30320786-30321114(+)$1	328	60	98	12.5291
ff:==========[eeeeellleeeee==========:	chr11:65357930-65358169(+)$1	239	159	197	11.1440
""bb!!a[a!!eeeeemmmmeeeee22a]a22bb4444	chr1:46714133-46714369(+)$1	236	77	115	11.3951
:cccffffff!!ddddoooooodddd]ffffff]ccc:	chr11:62288126-62288376(-)$1	250	145	183	11.9256
"ccc^^^^^^^^^^^^^^^^^^ccc333iiiiiiiii]	chr20:32686321-32686539(-)$1	218	162	200	11.8938
!ccc!!iiiiiiiii[annnnna]iiiiiiiiiccc22	chr22:36685229-36685441(-)$1	212	96	134	12.9806
===[a[ffffffxxxxxxxxxxxxxxxffffff]a]==	chr7:139097196-139097414(+)$1	218	131	169	10.4733
cccgggggggaeeeeemmmmeeeee22a]ggggggg22	chr1:31732672-31732960(-)$1	288	65	103	11.4873
[ccc[ccc"""eeeeeooooooeeeee]ccc]ccc]bb	chr1:1323233-1323494(-)$1	261	61	99	13.7011
======"""ccc[ddddnnnnnddddccc333======	chr21:34947801-34948015(+)$1	214	18	56	14.8941
iiiiiii[ccc[ddddoooooodddd]ccc333iiiii	chr3:142166613-142166891(-)$1	278	65	103	17.1525
ddd"""ccc[bbddddoooooodddd]bb4444ccc]d	chr2:153528939-153529200(-)$1	261	188	226	13.6613
b[ggggggga[bbddddmmmmdddd22bb]a]gggggg	chr19:45857891-45858165(-)$1	274	66	104	12.1119
D:iiiiiiiii[bb!!ccclllccc22bbiiiiiiiii	chr4:1919779-1920069(+)$1	290	167	205	11.1734
i[bb!!eeeee"""cccnnnnnccc22eeeee]bb444	chr9:36204018-36204275(+)$1	257	145	183	12.1361
$$ggggggg$$$$$bboooooobbggggggg4444ccc	chr16:663776-664031(+)$1	255	170	208	13.0884
===========[ddddnnnnndddd]===========c	chr11:65824208-65824445(+)$1	237	29	67	15.9994
"""eeeeeccc"""bboooooobb]ccc]eeeee]ccc	chr17:2246742-2247006(+)$1	264	92	130	12.3827
[ccc!!ffffff!!bboooooobb22ffffff22ccc2	chr6:30545088-30545331(+)$1	243	83	121	12.0566
b[bba[ccc"""ddddoooooodddd333ccc]a]bb]	chr1:150933048-150933328(+)$1	280	129	167	15.4710
:bb!!cccbb!!ddddoooooodddd22bb22ccc]bb	chr17:16061999-16062282(-)$1	283	138	176	12.5971
hhhhh!!ddddddddoooooodddd22dddd]hhhhhh	chr1:6713220-6713462(-)$1	242	175	213	11.9280
=====!!eeeee[a[cccmmmmccc22a]eeeee22==	chr1:45101589-45101852(+)$1	263	62	100	11.9839
==========="""bbmmmmbb4444============	chr3:47787298-47787507(-)$1	209	88	126	14.0322
!ggggggg[eeeeeooooooeeeee22ggggggg]ccc	chr1:67891824-67892068(-)$1	244	6	44	13.1615
"eeeee[ccc[ccc[ddddllldddd]ccc]ccc]eee	chr7:133059481-133059703(+)$1	222	54	92	10.8451

#otherMatches

#Seq PSSM
GUGCUGUAUGUGUCUAGACUGGUGGAGCAGUACAGAGA	chr5:34938899-34939166(+)$1	267	46	84	15.6285
AAAAGCUUGCACCUUCUGAGGAUGAACUUACUUGCUUU	chr12:14578030-14578275(+)$1	245	137	175	11.6553
UGACAUUCUGAGGGACAGCGGGUCCGAUCAGGAUUUGG	chr16:88643554-88643861(+)$1	307	54	92	14.1796
CGCGGCGGCGGUGGCGGCGAGGCCGCGGGAGGCCGCGG	chr16:9185787-9186087(+)$1	300	73	111	11.2670
UUGUAGGUGGAACCGUCCCAAAAUGUCCCUUGCUCAGA	chr1:93307229-93307454(+)$1	225	87	125	12.4807
UUAUAUUUUGGAUCUUCAGAGUAAGGGCCAGAGUGUGA	chr10:1055399-1055620(+)$1	221	101	139	19.0047
GUUAUUUCAGAUGACAGAUUUGAAGAUCUGGAAGAGGC	chr9:139302176-139302432(-)$1	256	32	70	11.9119
AGUUGUUUUUUAUGUUGCCAGGAGCUAAAUGAAAACCA	chr17:27844421-27844705(+)$1	284	28	66	14.2515
ACGUGGCUUCCUUCCGCUCCUGGAAGCGGAUUCCCGUG	chr17:56585484-56585731(-)$1	247	161	199	12.6207
AGUGAAGUGGGGACAGUGGGGCCCCUAUUGAGUCAGCC	chr19:6744938-6745194(+)$1	256	106	144	12.3796
GGGCAGGGAGCUGACCUGACCUGGGUGCAGCCCAUGCC	chrX:48663790-48664029(+)$1	239	170	208	12.6708
GUCUGCCCUAUAGCUUGUUAUGGAGUUCUGUGGGGCUG	chr2:102441733-102441991(+)$1	258	34	72	11.5182
CUGUUUUCUGUCGAGGAGAAUGAGGAAAAUGGGGAGCA	chr2:232576499-232576726(+)$1	227	82	120	13.3104
GUCCCCGAGGCAGGGCCGAGCUGCCUGGGCUGCGGGGA	chr19:47767932-47768166(+)$1	234	26	64	13.9777
GGACAUAAGCACACUUCUGUUUAACUUCUUGUGUUCUC	chr13:34405312-34405584(+)$1	272	28	66	11.8849
GAGUGACAGUUUCGUUCCACUCUUACGAGACUGCACCA	chr9:101611278-101611559(+)$1	281	14	52	12.5641
UGGGCAGUGACUCCGUGUGUAUGUGCUACCUCCCUCCC	chr6:170059451-170059715(-)$1	264	29	67	11.3541
GCUGUUGCAGAAGCUCAAAAAUUGAUGGUUCAAGCAGC	chr9:88593123-88593392(+)$1	269	64	102	13.0456
AAUGUCAUUUUGUUGCAUUUUUCUGGAUUUUUGAUGGU	chr2:85769385-85769597(+)$1	212	113	151	11.5105
GGAAGAAGUAGAGGCUGCCAAAGCUGCUGCCUUGCUAG	chr2:136529888-136530133(+)$1	245	139	177	11.4668
UUGGAAUAUUUGUACUUAAAUGUGCAUGAUGAAGACAG	chr3:32587240-32587471(-)$1	231	88	126	12.3543
CUGCUGACUGCGCACUUGGAAUAGUAGCAGGCGGCGGC	chr3:138553442-138553666(-)$1	224	75	113	14.7527
CCUACAUCUGCCUCUCGUCCUCAAGAGCCUCCAGGUGU	chr16:2482859-2483135(+)$1	276	10	48	12.8385
CCUUCUACUUGGGCCUACGAUGAGGACAAGAGGCUAAG	chrX:53409918-53410154(-)$1	236	148	186	16.0719
GUUUUAUGUUAAAUUGACUAAUCAUUUGGUAUGAAAUC	chr15:63954041-63954319(-)$1	278	50	88	13.5956
AAGGGAGUUGGAAAUUGAAGAACGAGAACGGCGUAGAG	chr10:120809221-120809492(-)$1	271	101	139	11.5647
GCCUGGGCAUUAGGUCACAGAGGUGCCUGCUCAGGCAG	chr19:6383222-6383460(-)$1	238	151	189	12.4779
CAUGGCCAAGAGGAUUCACGCAGAAGGCCUGGGCUAUC	chr3:38420686-38420936(+)$1	250	103	141	11.8106
AUGUCAUUCAUUUUCUUAAAGUAGAUUGAAAUAAUGAC	chr11:74500592-74500845(+)$1	253	165	203	12.1766
UGAAUUUUUUCAUGAAUGCUAAUUUUUGAAAAGUUUCG	chr10:129910302-129910550(-)$1	248	186	224	12.7153
CAGGUGCUCAGGACCCAGCCGAGGGUGCAGCCCGCUCA	chr20:62575373-62575630(-)$1	257	112	150	13.8708
GGGGGUCAUUUUUAUUCAGGAUGAAGAUGCAUCAGGGG	chr8:117861139-117861369(-)$1	230	82	120	14.0223
GAGAUAUUUCCGCUUCUUCACUGAUGAGAGAAUCUUCA	chr20:36640622-36640842(-)$1	220	42	80	14.2991
AAUUGGAGAUUUGCUUUUUUUUUUUAAUUGUUUUUAGU	chr17:30320786-30321114(+)$1	328	60	98	12.5291
GCAGAGGGACUCUUAGCUACUUUGGUUAGAGUUCUUCA	chr11:65357930-65358169(+)$1	239	159	197	11.1440
GCCAAGAGAAAACCUGAAGGCAGGUCCUGUGAUGAUGA	chr1:46714133-46714369(+)$1	236	77	115	11.3951
UGGAUGUCAAAGGCCCUAAAGUGGGCAUUGACACUCCU	chr11:62288126-62288376(-)$1	250	145	183	11.9256
GCUUGGCAAUAAAAAGAAGAAAAAGAAGAAUGUUAAGU	chr20:32686321-32686539(-)$1	218	162	200	11.8938
AGCUCCUGGCGGAGGAGAAGACCAUCUCUGCCAAGUAU	chr22:36685229-36685441(-)$1	212	96	134	12.9806
UAGGUGUAUUACAUAAGACAGGUAUAAGUAGUGAAGUU	chr7:139097196-139097414(+)$1	218	131	169	10.4733
GGCCGCUUGUCUUUGAGACCUCAGACUGCAUAAGUGAU	chr1:31732672-31732960(-)$1	288	65	103	11.4873
AAGAAGGUAAAGGGAGCAAGCCUUCCCCACUGUCUGUG	chr1:1323233-1323494(-)$1	261	61	99	13.7011
UUGAGGUUCAGACUCCUACAGAGGGAUCUUUGUUUUAA	chr21:34947801-34948015(+)$1	214	18	56	14.8941
UUCGGUUUGGCCCUGACUGGGAUUAGUGUUGACGAUCG	chr3:142166613-142166891(-)$1	278	65	103	17.1525
UUGAAAAUCAUGAGAAAAUGACUUCUACAACCAGAUAC	chr2:153528939-153529200(-)$1	261	188	226	13.6613
GAACUAUGGGAACCUCCUGCUGGAGAUGUCCGCUGUGG	chr19:45857891-45858165(-)$1	274	66	104	12.1119
CAGUGGAGGAGCGGAAAGCCAAGUUCACCUUUCUCUAU	chr4:1919779-1920069(+)$1	290	167	205	11.1734
AAGCAAACAACAGGUCAGUCCGUGGUGGUUGUAGCACA	chr9:36204018-36204275(+)$1	257	145	183	12.1361
CGGGAAGCACACAGUCGGCGCAGAUGCUUCCAAAAUGU	chr16:663776-664031(+)$1	255	170	208	13.0884
GAAUGCAUUUGCCAGGGGCUGCCUGCCAAAUGCGUUUU	chr11:65824208-65824445(+)$1	237	29	67	15.9994
GCAGGUGAAGCAAAUCAUGGAGGAGGCUGUCACCAGGA	chr17:2246742-2247006(+)$1	264	92	130	12.3827
GCUUAACUUUCUAGACAAAGUGGUGAAGAAAGGGAAGA	chr6:30545088-30545331(+)$1	243	83	121	12.0566
CAGUGGUGUAGACUUGAAGGACCAGGAAGAUGGCAACA	chr1:150933048-150933328(+)$1	280	129	167	15.4710
AGCCCGUGUCCCCUCCUCCUGUGGAGCAGAAACACCGC	chr17:16061999-16062282(-)$1	283	138	176	12.5971
UACCAUUGGGACAUGCAGCCCCAUGUUUCCCCUGGUGU	chr1:6713220-6713462(-)$1	242	175	213	11.9280
GCAGGUGGGGAUGGCCUGGGCCCAGCAUGAUCCUGCUC	chr1:45101589-45101852(+)$1	263	62	100	11.9839
AGUAUAAAAAUGAACAGGGAUGGUAAGUUUUUGUAUUU	chr3:47787298-47787507(-)$1	209	88	126	14.0322
GUGGAUUGGAAGAGAAGCAGCUUUUGACAGUCCAGGCC	chr1:67891824-67892068(-)$1	244	6	44	13.1615
UGCGUGUACGUAUGUGUAAAUGUUAUUUAUUUGUUUAU	chr7:133059481-133059703(+)$1	222	54	92	10.8451

#DB
(((((((.....((((......)))))))))))))...	chr5:34938899-34939166(+)$1	1	46	84	15.6285
((((((..(....(((.......)))....)..)))))	chr12:14578030-14578275(+)$1	1	137	175	11.6553
(.(.(((((((.((((.....))))..))))))).).)	chr16:88643554-88643861(+)$1	1	54	92	14.1796
((((((..(.(((((......))))).)...)))))).	chr16:9185787-9186087(+)$1	1	73	111	11.2670
(((((((.(((..(((......)))))))))))..)))	chr1:93307229-93307454(+)$1	1	87	125	12.4807
(((((((((((..(((......)))..)))))))))))	chr10:1055399-1055620(+)$1	1	101	139	19.0047
((((((...))))))))))....))))((((((((((.	chr9:139302176-139302432(-)$1	1	32	70	11.9119
.(((....((((.(((......)))))))....)))))	chr17:27844421-27844705(+)$1	1	28	66	14.2515
(((.((..(((((((......))))..)))..))))))	chr17:56585484-56585731(-)$1	1	161	199	12.6207
..(.((..((((.(......)))))..)).))))..))	chr19:6744938-6745194(+)$1	1	106	144	12.3796
(((.(((.(((((((((.....)))).))))...).))	chrX:48663790-48664029(+)$1	1	170	208	12.6708
....((((((((((((......)))..))))))))).(	chr2:102441733-102441991(+)$1	1	34	72	11.5182
(((((((((((.................))))))))))	chr2:232576499-232576726(+)$1	1	82	120	13.3104
.((((((.(((.((((......))))..))).))))))	chr19:47767932-47768166(+)$1	1	26	64	13.9777
(((((((((..................)))))))))).	chr13:34405312-34405584(+)$1	1	28	66	11.8849
(.(((.(((((((((.........))))))))))))).	chr9:101611278-101611559(+)$1	1	14	52	12.5641
.(((..(((.(..(((....))).).)))..)))..))	chr6:170059451-170059715(-)$1	1	29	67	11.3541
.(((((((.(((.(((((...)))).).)))..)))))	chr9:88593123-88593392(+)$1	1	64	102	13.0456
)).)).))))))).))))....)))...))))))))))	chr2:85769385-85769597(+)$1	1	113	151	11.5105
(.(((..((((.((((.....)))).))))))).)).)	chr2:136529888-136530133(+)$1	1	139	177	11.4668
(((...(((((((((......))))).))))....)))	chr3:32587240-32587471(-)$1	1	88	126	12.3543
((((((.((((..(((......))).)))).)))))))	chr3:138553442-138553666(-)$1	1	75	113	14.7527
((((((((((...(((........)))....)))))))	chr16:2482859-2483135(+)$1	1	10	48	12.8385
((((...(((..((((......))).)..)))...)))	chrX:53409918-53410154(-)$1	1	148	186	16.0719
((((((((((((((.((....)))))))))))))))))	chr15:63954041-63954319(-)$1	1	50	88	13.5956
(.(...((((....(((.....)))...))))......	chr10:120809221-120809492(-)$1	1	101	139	11.5647
(((((((((...((.(((....))))))))))))))..	chr19:6383222-6383460(-)$1	1	151	189	12.4779
(((((((...(((.(((.....)))..))).)))))).	chr3:38420686-38420936(+)$1	1	103	141	11.8106
((((((((.(((((((......)))...))))))))))	chr11:74500592-74500845(+)$1	1	165	203	12.1766
((((.(((((((.((((....)))).))))))).))))	chr10:129910302-129910550(-)$1	1	186	224	12.7153
..((.(((..(.((((......)))).)))))))))).	chr20:62575373-62575630(-)$1	1	112	150	13.8708
((..(.((((((((((...))))))))))).)))))))	chr8:117861139-117861369(-)$1	1	82	120	14.0223
.(((...((((.(.((......)).).).)))...)).	chr20:36640622-36640842(-)$1	1	42	80	14.2991
((((((((((...................)))))))))	chr17:30320786-30321114(+)$1	1	60	98	12.5291
)).((((((((((.(((((...))))))))))))))).	chr11:65357930-65358169(+)$1	1	159	197	11.1440
..((..(.(..(((((....)))))..).)..))....	chr1:46714133-46714369(+)$1	1	77	115	11.3951
.(((((((((..((((......)))).)))))).))).	chr11:62288126-62288376(-)$1	1	145	183	11.9256
.(((..................)))...))))))))).	chr20:32686321-32686539(-)$1	1	162	200	11.8938
.(((..(((((((((.(.....).))))))))))))..	chr22:36685229-36685441(-)$1	1	96	134	12.9806
(((.(.((((((...............)))))).).))	chr7:139097196-139097414(+)$1	1	131	169	10.4733
((((((((((((((((....)))))..).)))))))..	chr1:31732672-31732960(-)$1	1	65	103	11.4873
.(((.(((...(((((......))))).))).))).))	chr1:1323233-1323494(-)$1	1	61	99	13.7011
((((((...(((.((((.....)))))))...))))))	chr21:34947801-34948015(+)$1	1	18	56	14.8941
(((((((.(((.((((......)))).)))...)))))	chr3:142166613-142166891(-)$1	1	65	103	17.1525
(((...(((.((((((......)))).))....))).)	chr2:153528939-153529200(-)$1	1	188	226	13.6613
(.((((((((.((((((....))))..)).).))))))	chr19:45857891-45858165(-)$1	1	66	104	12.1119
(.(((((((((.((..(((...)))..)))))))))))	chr4:1919779-1920069(+)$1	1	167	205	11.1734
(.((..(((((...(((.....)))..))))).))...	chr9:36204018-36204275(+)$1	1	145	183	12.1361
..(((((((.....((......)))))))))....)))	chr16:663776-664031(+)$1	1	170	208	13.0884
(((((((((((.((((.....)))).))))))))))))	chr11:65824208-65824445(+)$1	1	29	67	15.9994
...((((((((...((......)).))).))))).)))	chr17:2246742-2247006(+)$1	1	92	130	12.3827
.(((..((((((..((......))..))))))..))).	chr6:30545088-30545331(+)$1	1	83	121	12.0566
(.(((.(((...((((......))))...))).).)).	chr1:150933048-150933328(+)$1	1	129	167	15.4710
.((..(((((..((((......))))..))..))).))	chr17:16061999-16062282(-)$1	1	138	176	12.5971
(((((..((((((((......))))..)))).))))))	chr1:6713220-6713462(-)$1	1	175	213	11.9280
(((((..(((((.(.(((....)))..).)))))..))	chr1:45101589-45101852(+)$1	1	62	100	11.9839
(((((((((((...((....))....))))))))))))	chr3:47787298-47787507(-)$1	1	88	126	14.0322
.(((((((.(((((......)))))..))))))).)))	chr1:67891824-67892068(-)$1	1	6	44	13.1615
.(((((.(((.(((.((((...)))).))).))).)))	chr7:133059481-133059703(+)$1	1	54	92	10.8451

#PSSM
= : 0.23	i : 0.08	[ : 0.08	c : 0.08	" : 0.08	f : 0.06	! : 0.06	: : 0.05	b : 0.05	g : 0.05	a : 0.03	h : 0.03	# : 0.01	d : 0.01	D : 0.01	$ : 0.01	
= : 0.23	c : 0.18	[ : 0.11	f : 0.08	g : 0.08	i : 0.06	" : 0.05	: : 0.03	h : 0.03	! : 0.01	a : 0.01	d : 0.01	$ : 0.01	b : 0.01	e : 0.01	
= : 0.23	c : 0.20	g : 0.11	b : 0.10	i : 0.06	a : 0.05	f : 0.05	e : 0.03	: : 0.03	h : 0.03	] : 0.01	! : 0.01	d : 0.01	" : 0.01	
= : 0.22	c : 0.15	g : 0.13	b : 0.10	[ : 0.08	i : 0.06	f : 0.05	e : 0.05	" : 0.05	h : 0.03	! : 0.03	: : 0.01	
= : 0.22	g : 0.11	! : 0.10	i : 0.08	" : 0.08	f : 0.06	e : 0.05	b : 0.05	c : 0.05	[ : 0.05	a : 0.05	h : 0.03	# : 0.01	^ : 0.01	
= : 0.20	g : 0.13	! : 0.13	i : 0.08	" : 0.08	f : 0.06	c : 0.06	[ : 0.06	e : 0.05	b : 0.03	# : 0.01	] : 0.01	h : 0.01	^ : 0.01	
= : 0.16	g : 0.13	i : 0.11	! : 0.11	c : 0.11	f : 0.08	e : 0.05	" : 0.05	d : 0.03	[ : 0.03	l : 0.01	# : 0.01	h : 0.01	a : 0.01	^ : 0.01	
= : 0.16	c : 0.15	g : 0.13	[ : 0.08	i : 0.08	d : 0.08	! : 0.06	f : 0.05	e : 0.05	" : 0.03	$ : 0.01	l : 0.01	# : 0.01	h : 0.01	^ : 0.01	
c : 0.18	= : 0.16	d : 0.11	g : 0.10	i : 0.08	a : 0.06	[ : 0.05	" : 0.05	f : 0.05	e : 0.03	$ : 0.01	l : 0.01	! : 0.01	^ : 0.01	b : 0.01	
c : 0.16	= : 0.16	d : 0.15	g : 0.06	i : 0.06	" : 0.06	[ : 0.05	f : 0.05	e : 0.05	$ : 0.03	^ : 0.03	! : 0.03	# : 0.01	a : 0.01	b : 0.01	
c : 0.13	= : 0.13	d : 0.11	e : 0.08	i : 0.06	a : 0.06	" : 0.06	! : 0.06	g : 0.05	^ : 0.05	$ : 0.03	# : 0.03	f : 0.03	[ : 0.03	b : 0.01	
[ : 0.13	e : 0.11	! : 0.11	d : 0.10	" : 0.10	= : 0.06	c : 0.06	i : 0.05	^ : 0.05	$ : 0.03	# : 0.03	g : 0.03	f : 0.03	b : 0.03	z : 0.01	
d : 0.25	e : 0.10	[ : 0.10	! : 0.08	= : 0.06	" : 0.06	i : 0.05	^ : 0.05	b : 0.05	# : 0.03	a : 0.03	c : 0.03	z : 0.01	g : 0.01	x : 0.01	$ : 0.01	
d : 0.28	c : 0.18	e : 0.10	= : 0.05	a : 0.05	^ : 0.05	[ : 0.05	" : 0.05	i : 0.03	b : 0.03	z : 0.01	] : 0.01	# : 0.01	x : 0.01	$ : 0.01	! : 0.01	
d : 0.32	c : 0.22	e : 0.10	b : 0.08	[ : 0.06	^ : 0.05	= : 0.03	o : 0.03	i : 0.03	z : 0.01	x : 0.01	! : 0.01	
d : 0.30	c : 0.25	o : 0.10	b : 0.10	e : 0.06	^ : 0.05	= : 0.03	z : 0.01	r : 0.01	[ : 0.01	x : 0.01	! : 0.01	
o : 0.44	d : 0.11	c : 0.10	m : 0.06	n : 0.05	^ : 0.05	p : 0.01	= : 0.01	z : 0.01	r : 0.01	q : 0.01	b : 0.01	l : 0.01	e : 0.01	a : 0.01	x : 0.01	
o : 0.44	n : 0.15	m : 0.11	^ : 0.05	d : 0.05	c : 0.05	p : 0.01	= : 0.01	z : 0.01	r : 0.01	q : 0.01	l : 0.01	e : 0.01	x : 0.01	
o : 0.44	n : 0.15	m : 0.15	^ : 0.05	l : 0.03	p : 0.01	= : 0.01	z : 0.01	r : 0.01	4 : 0.01	q : 0.01	e : 0.01	x : 0.01	c : 0.01	d : 0.01	
o : 0.44	n : 0.15	m : 0.15	l : 0.06	^ : 0.05	4 : 0.03	p : 0.01	z : 0.01	r : 0.01	q : 0.01	= : 0.01	x : 0.01	
o : 0.40	n : 0.15	m : 0.08	l : 0.06	^ : 0.05	e : 0.05	4 : 0.03	p : 0.01	a : 0.01	z : 0.01	r : 0.01	c : 0.01	q : 0.01	= : 0.01	x : 0.01	b : 0.01	
o : 0.33	d : 0.15	n : 0.10	e : 0.08	^ : 0.05	l : 0.05	4 : 0.03	b : 0.03	m : 0.03	p : 0.01	z : 0.01	r : 0.01	c : 0.01	q : 0.01	= : 0.01	x : 0.01	
d : 0.33	c : 0.27	e : 0.11	b : 0.08	4 : 0.03	^ : 0.03	p : 0.01	z : 0.01	r : 0.01	q : 0.01	= : 0.01	a : 0.01	x : 0.01	
d : 0.35	c : 0.27	e : 0.11	b : 0.06	^ : 0.03	] : 0.03	= : 0.03	z : 0.01	r : 0.01	q : 0.01	x : 0.01	4 : 0.01	
d : 0.35	c : 0.28	e : 0.11	^ : 0.03	i : 0.03	= : 0.03	] : 0.03	z : 0.01	a : 0.01	x : 0.01	g : 0.01	2 : 0.01	4 : 0.01	
2 : 0.25	d : 0.22	] : 0.11	c : 0.06	e : 0.06	3 : 0.06	^ : 0.03	i : 0.03	= : 0.03	z : 0.01	b : 0.01	a : 0.01	x : 0.01	g : 0.01	4 : 0.01	
2 : 0.27	] : 0.15	c : 0.08	3 : 0.08	d : 0.06	= : 0.06	i : 0.05	^ : 0.03	a : 0.03	g : 0.03	e : 0.03	4 : 0.01	z : 0.01	b : 0.01	x : 0.01	f : 0.01	
c : 0.13	= : 0.13	a : 0.10	d : 0.10	i : 0.08	3 : 0.08	g : 0.06	b : 0.06	2 : 0.05	f : 0.05	4 : 0.03	] : 0.03	z : 0.01	^ : 0.01	e : 0.01	
c : 0.16	= : 0.15	d : 0.13	i : 0.11	b : 0.08	] : 0.08	g : 0.06	f : 0.05	4 : 0.03	3 : 0.03	e : 0.03	2 : 0.01	^ : 0.01	
c : 0.18	= : 0.15	i : 0.13	d : 0.11	g : 0.08	4 : 0.06	e : 0.06	f : 0.05	3 : 0.03	] : 0.03	a : 0.03	2 : 0.01	b : 0.01	
= : 0.15	i : 0.13	c : 0.13	g : 0.08	d : 0.08	e : 0.06	2 : 0.06	] : 0.06	a : 0.05	3 : 0.05	4 : 0.05	f : 0.05	
= : 0.16	i : 0.15	c : 0.11	2 : 0.08	g : 0.08	f : 0.08	e : 0.06	4 : 0.06	] : 0.06	3 : 0.05	d : 0.03	b : 0.01	
= : 0.18	i : 0.15	g : 0.10	c : 0.10	f : 0.08	4 : 0.06	3 : 0.06	2 : 0.05	e : 0.05	b : 0.05	h : 0.03	] : 0.03	> : 0.01	
= : 0.20	c : 0.15	i : 0.13	g : 0.10	] : 0.06	f : 0.05	b : 0.05	3 : 0.05	2 : 0.03	4 : 0.03	h : 0.03	e : 0.03	> : 0.01	d : 0.01	a : 0.01	
= : 0.20	c : 0.15	i : 0.13	] : 0.08	g : 0.08	2 : 0.06	f : 0.05	4 : 0.05	a : 0.03	b : 0.03	3 : 0.03	h : 0.03	> : 0.01	d : 0.01	
= : 0.20	c : 0.18	i : 0.11	g : 0.10	f : 0.06	] : 0.06	4 : 0.05	2 : 0.05	b : 0.05	h : 0.03	a : 0.01	> : 0.01	d : 0.01	e : 0.01	
= : 0.23	c : 0.15	g : 0.08	i : 0.08	f : 0.06	b : 0.06	4 : 0.05	] : 0.05	h : 0.05	d : 0.03	2 : 0.03	: : 0.01	a : 0.01	> : 0.01	3 : 0.01	e : 0.01	
= : 0.16	c : 0.11	g : 0.10	] : 0.08	: : 0.06	2 : 0.06	4 : 0.05	h : 0.05	b : 0.05	i : 0.05	f : 0.03	d : 0.03	e : 0.03	a : 0.01	r : 0.01	D : 0.01	> : 0.01	3 : 0.01	

#score	763.4409111905084
#seq	59
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_UTR_m3_run1.txt

#BEAR
HHHHHHHZZZBB}EEEEE}BBZZZCCC:c	chr16:30134333-30134598(-)$1	265	171	200	13.1195
IIIIIII}BBYYCCCYYBBDDDD}FFFFF	chr13:115000368-115000648(+)$1	280	227	256	15.0123
FFFFFF}EEEEEFFFFFFJJJJJJJJJJJ	chr12:69667906-69668155(+)$1	249	203	232	12.6213
FFFFFDDDDYYDDDD}A}EEEEE}EEEEE	chr5:131132508-131132810(-)$1	302	220	249	14.9800
JJJJJJ}EEEEE}CCCZZZJJJJJJJJJJ	chr7:139044592-139044860(+)$1	268	210	239	12.6574
GGG~~~~EEEEE}CCC}EEEEEA}BB}AH	chr1:150947034-150947297(-)$1	263	200	229	14.7295
JJJJJJJ}BBYYBB}A}CCC}BB}DDDD}	chr1:894494-894738(-)$1	244	209	238	13.8849
??CCC}AYYABB}A~~~~EEEEE}DDDD:	chr12:53574431-53574710(+)$1	279	246	275	12.5736
IIIIIIIZZZBB}BB~~~~DDDD}CCC::	chr18:43678109-43678357(-)$1	248	214	243	15.0459
EEEEEYYA}CCC}EEEEE}EEEEE}CCC~	chr17:57232261-57232556(-)$1	295	199	228	13.7597
HHCCC}BBDDDD}EEEEE}DDDD}CCC}B	chr1:40626956-40627284(+)$1	328	255	284	14.2363
EEEEEZZZEEEEE}CCCCCC}BB}A}A}B	chr6:34664393-34664666(-)$1	273	208	237	13.3998
GGGGGGG~~~~A}CCC~~~~DDDDFFFFF	chr10:101379907-101380260(-)$1	353	316	345	14.5551
FFFFFFCCC}CCC~~~~DDDD}CCCHHHH	chr2:74405843-74406102(-)$1	259	200	229	13.7463
GGGGGG}EEEEE~~~~BB}FFFFFF:::e	chr1:1310383-1310624(-)$1	241	90	119	13.6091
JJJJJJ}DDDD~~~~BB}CCC~~~~A}DD	chr2:61765237-61765499(-)$1	262	222	251	14.8420
GGGGGYYA}DDDDYYEEEEEYYA}HHHHH	chr19:1269236-1269507(+)$1	271	103	132	15.2601
GGGGGGZZZCCCYYBBYYEEEEE}CCC}C	chr1:184723819-184724082(-)$1	263	207	236	16.8466
GGGGGG}CCC~~~~FFFFFFBB}CCC}A:	chr1:180601056-180601316(+)$1	260	213	242	14.0705
GGGGGG}CCC}DDDDA}EEEEE}GGGGGG	chr21:47878917-47879215(+)$1	298	154	183	12.3892
HHHHHHHHCCC~~~~FFFFFFBB}CCCCC	chr8:74884202-74884487(-)$1	285	124	153	14.1116
FFFFFZZZDDDD}DDDD}CCCCCC}CCCY	chr9:15422774-15423066(+)$1	292	252	281	13.6759
FFFFFFEEEEE?????EEEEE}FFFFFF~	chr20:34252555-34252826(-)$1	271	189	218	14.1365
FFFFFF}EEEEE}EEEEEEEEEE}EEEEE	chr3:122785815-122786174(+)$1	359	281	310	17.9784
HHHHHH}BBYYCCCBBIIIIIIIIIEEEE	chr1:202976424-202976705(+)$1	281	251	280	13.4538
FFFFFFZZZCCC}BBYYCCC}CCC}DDDD	chr10:7830054-7830326(+)$1	272	232	261	15.1838
FFFFFFZZZFFFFFF}BB}BB}CCC}FFF	chr3:42845817-42846087(-)$1	270	182	211	14.0007
GGGGGGG}CCCYYBBYYFFFFFF}CCCbb	chr17:43024913-43025181(-)$1	268	196	225	13.6662
GGGGGG}AYYEEEEEFFFFFFYYGGGGGG	chr1:11072611-11072901(+)$1	290	250	279	13.0582
JJJJJJJEEEEE}FFFFFFYYBB}JJJJJ	chr15:66797037-66797284(-)$1	247	175	204	13.5166
HHHHHHH}CCCYYBB~~~~DDDD}DDDDc	chr16:30662130-30662417(+)$1	287	231	260	14.6612
cEEEEEYYDDDDYYBB}EEEEEYYBB}HH	chr2:170440775-170441069(+)$1	294	230	259	14.4343
IIIIIZZZDDDDZZZBB~~~~DDDD}III	chr10:103578019-103578291(-)$1	272	229	258	14.6813
fGGGGGGGDDDD}DDDDEEEEE}IIIIII	chr6:31704054-31704312(-)$1	258	167	196	11.8431
cDDDD}BBDDDD}AYYBBYYBBYYFFFFF	chr22:19419049-19419362(-)$1	313	178	207	12.9555
HHHYYA}BB}BB}DDDD}EEEEE}BBFFF	chr1:109289227-109289509(+)$1	282	117	146	15.5838
IIIIII}EEEEE}BBEEEEEYYDDDDYYF	chr7:44887469-44887718(-)$1	249	214	243	16.2135
FFFFF}BBZZZEEEEEYYEEEEE}CCC}D	chrX:153686525-153686889(+)$1	364	329	358	16.2955
GGGGGGZZZCCC}BBZZZDDDD~~~~GGG	chr7:50860986-50861256(-)$1	270	152	181	13.9546
FFFFFF}A}BB}BBFFFFFFYYA}EEEEE	chr16:9185473-9185734(+)$1	261	216	245	16.1409
::DDDD}EEEEE}A}DDDD}A}A}CCCDD	chr19:6739607-6739900(+)$1	293	215	244	12.1114
IYYCCCYYDDDD}DDDD}EEEEEZZZEEE	chr1:201798183-201798499(+)$1	316	283	312	12.8182
IIIIIII~~~~BBYYCCC}EEEEEDDDD:	chr20:2451256-2451536(-)$1	280	251	280	14.8780
GGGGGGGZZZBB}BBIIIIIIIII}EEEE	chr21:38445482-38445750(+)$1	268	238	267	12.3126
FFFFFF}BBYYDDDD}CCCYYDDDD}DDD	chr11:62432687-62432933(+)$1	246	138	167	14.6171
FFFFFFEEEEE~~~~CCC}FFFFFFZZZD	chr4:56262028-56262277(+)$1	249	151	180	14.7641
IIIII~~~~BB}BB~~~~EEEEE}A}BB:	chr7:77166501-77166742(+)$1	241	202	231	16.4554
FFFFFF}DDDDDDDDYYFFFFFF}GGGGG	chr22:50699870-50700236(-)$1	366	286	315	14.1132
FFFFFF}EEEEEYYBBYYAYYDDDD}HHH	chr2:28974739-28975051(+)$1	312	232	261	16.7661
GGGGGG}DDDDZZZCCCEEEEEYYCCC}C	chr21:35287924-35288197(-)$1	273	240	269	15.2154
:EEEEE}EEEEEZZZFFFFFF}EEEEE::	chr2:183902904-183903208(-)$1	304	122	151	12.7130
FFFFFFYYDDDD?????FFFFFFYYBBFF	chr4:174089817-174090082(+)$1	265	219	248	14.3198
FFFFFF}EEEEECCCYYJJJJJJJJJJJJ	chr12:7052894-7053148(+)$1	254	216	245	13.6099
GGACCCDDDDDDDD}CCC}DDDD}EEEEE	chr7:104654568-104654825(+)$1	257	228	257	11.9724
FFFFFYYEEEEEYYIIIIIIIII}EEEEE	chr3:183602431-183602779(-)$1	348	299	328	14.1216
FFFFFZZZDDDDZZZBB}EEEEE}JJJJJ	chr19:15442557-15442794(-)$1	237	193	222	16.0875

#otherMatches

#Seq PSSM
CGUUCGACGUGGGCCCGCGCUACACGCAG	chr16:30134333-30134598(-)$1	265	171	200	13.1195
UACCUCGACCAGGUGGGCGGCCCCGACUC	chr13:115000368-115000648(+)$1	280	227	256	15.0123
AUUGAAAAUAAAACAAACUUUUGAUAAGA	chr12:69667906-69668155(+)$1	249	203	232	12.6213
CUCUUCAGCAAGAGGACCGGGCUGGGCGC	chr5:131132508-131132810(-)$1	302	220	249	14.9800
CUGUCGUCUUCCACGUACACGUCGUCGUG	chr7:139044592-139044860(+)$1	268	210	239	12.6574
CGGGUGAGUcggggcccccgcccggcgcc	chr1:150947034-150947297(-)$1	263	200	229	14.7295
UUGCUCCUCUCAGCGGGGCUGGGGCGAGC	chr1:894494-894738(-)$1	244	209	238	13.8849
AGCUCGCAAGCCGUGGGGUGCCGCGCGgg	chr12:53574431-53574710(+)$1	279	246	275	12.5736
GGACUGGUGAGCACCGAAGGCCGGCAUGA	chr18:43678109-43678357(-)$1	248	214	243	15.0459
CCAAAGGGAGCCGCCACCGUCUGGUGUCU	chr17:57232261-57232556(-)$1	295	199	228	13.7597
GGGACUGCGGCCGUGUCUGUGGCAGCUGG	chr1:40626956-40627284(+)$1	328	255	284	14.2363
CCUCCAGGUccccgggcccggcggcgcgg	chr6:34664393-34664666(-)$1	273	208	237	13.3998
GGCCCCCGGUACGACAAGAUCCGGACUCC	chr10:101379907-101380260(-)$1	353	316	345	14.5551
CGCUGCCCGUGAGCUAAGGACGGUCCGCU	chr2:74405843-74406102(-)$1	259	200	229	13.7463
GGUCGGGCUUGGGAAGGGUCAGCGGGAGG	chr1:1310383-1310624(-)$1	241	90	119	13.6091
CUGCAGUCCGUGCAACCACCCAGAGGGGG	chr2:61765237-61765499(-)$1	262	222	251	14.8420
GCGUUAGGAGGCUCGGGUCGUUGUGGUGC	chr19:1269236-1269507(+)$1	271	103	132	15.2601
UCUCGGCACGGCUAGCAGCCCCCUGGCCA	chr1:184723819-184724082(-)$1	263	207	236	16.8466
CGGAGUCGCUGUUGCCGCCGCCGCCUGUA	chr1:180601056-180601316(+)$1	260	213	242	14.0705
GCGGCGCCGCUGCCUGCCGAGGUGCGGGA	chr21:47878917-47879215(+)$1	298	154	183	12.3892
GGGGCUGUGGCAGUACGCGGGGACCCGGC	chr8:74884202-74884487(-)$1	285	124	153	14.1116
GUGGCGGGGCCGUCUGCGCGGGGCCGGGG	chr9:15422774-15423066(+)$1	292	252	281	13.6759
CGUGGUGCCCCUUGGUGGCCCGGGGCGGG	chr20:34252555-34252826(-)$1	271	189	218	14.1365
UCCCGCGUGCCCUUCUGCGCUCUCUGCUC	chr3:122785815-122786174(+)$1	359	281	310	17.9784
GGGCCCACGACGCCUGCUCCGGCCGAGGU	chr1:202976424-202976705(+)$1	281	251	280	13.4538
GCAGGGAGGAGGAGAUGGGCGCGGGGGCA	chr10:7830054-7830326(+)$1	272	232	261	15.1838
CUGCGAGCCAGGGACUCGGGCCGCGGGGC	chr3:42845817-42846087(-)$1	270	182	211	14.0007
GCCCACGGCGGAACCGACCGCGCGAACGC	chr17:43024913-43025181(-)$1	268	196	225	13.6662
GCCCGAGGCAGACGCAGCGGCUUCGGACC	chr1:11072611-11072901(+)$1	290	250	279	13.0582
UUGGCUGGCCUUACCCCGUAUCUCGGGGC	chr15:66797037-66797284(-)$1	247	175	204	13.5166
CGCCCCUGUCUGAGCGGAGCUUUGCGGCG	chr16:30662130-30662417(+)$1	287	231	260	14.6612
UGGUAUGAGGCUCAAGUUGUUCUGGCGGC	chr2:170440775-170441069(+)$1	294	230	259	14.4343
CCAGGGAACGAGAGGUCACAGCCUCGCUC	chr10:103578019-103578291(-)$1	272	229	258	14.6813
CGCCUUCCCCGGUCCCAGCCCCUCCCAGU	chr6:31704054-31704312(-)$1	258	167	196	11.8431
cggguggcggcuguggcggcggagggggg	chr22:19419049-19419362(-)$1	313	178	207	12.9555
CGCAGUGUCGGGAAGAUGGCGCCGCCGGU	chr1:109289227-109289509(+)$1	282	117	146	15.5838
GUCGGCGCCGCUACCUGUGGAGUCGGGAG	chr7:44887469-44887718(-)$1	249	214	243	16.2135
GUGGGGGUCAGGCCCUAUCCCUGCCCGUC	chrX:153686525-153686889(+)$1	364	329	358	16.2955
GCUCGGAGACCCGGUGGAGCCCAAAGUUU	chr7:50860986-50861256(-)$1	270	152	181	13.9546
GGCCUGGGGCGGGGGUCGUCCCUGGUUGC	chr16:9185473-9185734(+)$1	261	216	245	16.1409
UUCCCCUUUGCUGGGGUCCAGGCACCCCC	chr19:6739607-6739900(+)$1	293	215	244	12.1114
GAAGAACAGAUUAAGGUGCUGGAGGUGAC	chr1:201798183-201798499(+)$1	316	283	312	12.8182
GAGUGGGAACCGCGACUGAUCGGGGAGGA	chr20:2451256-2451536(-)$1	280	251	280	14.8780
CAGCCGAGAUGCCGGGGGAGCGGGGCCUU	chr21:38445482-38445750(+)$1	268	238	267	12.3126
GUAGCCAGAUUGGGCGGCCGGGAGUGGUG	chr11:62432687-62432933(+)$1	246	138	167	14.6171
CGGCCUGCCCCUCACCUCACUCCCGCUGC	chr4:56262028-56262277(+)$1	249	151	180	14.7641
CCGCCUAGGGCGGUGGGGAGGAGGAGGGA	chr7:77166501-77166742(+)$1	241	202	231	16.4554
CCCGGGCCUGCCAUGAGCUCUCCGCCGCC	chr22:50699870-50700236(-)$1	366	286	315	14.1132
GAGAGUCUGUGCCGACAAGAUGGCGGACG	chr2:28974739-28975051(+)$1	312	232	261	16.7661
GGGUGCGAUGCUUCGGCUGGGGAAGUCUG	chr21:35287924-35288197(-)$1	273	240	269	15.2154
gggugggggcggaagggcggcgggcggaa	chr2:183902904-183903208(-)$1	304	122	151	12.7130
CUUCCUGGGGCUAGUGGUCCUCUGGUCUU	chr4:174089817-174090082(+)$1	265	219	248	14.3198
UGAUGCAGUUGUAAGCUUGGGGUAUGAAG	chr12:7052894-7053148(+)$1	254	216	245	13.6099
CUCCCCUACUCCUCGGUUCCUGGUGAAGA	chr7:104654568-104654825(+)$1	257	228	257	11.9724
CCUCUUGGUCCCUGAGCUCUGGCCGUGUA	chr3:183602431-183602779(-)$1	348	299	328	14.1216
UCCGCGGUCCUCUAGGCGGGCUCGGCCGC	chr19:15442557-15442794(-)$1	237	193	222	16.0875

#DB
)))))))...)).))))).))...))).(	chr16:30134333-30134598(-)$1	1	171	200	13.1195
))))))).))..)))..)))))).)))))	chr13:115000368-115000648(+)$1	1	227	256	15.0123
)))))).))))))))))))))))))))))	chr12:69667906-69668155(+)$1	1	203	232	12.6213
)))))))))..)))).).))))).)))))	chr5:131132508-131132810(-)$1	1	220	249	14.9800
)))))).))))).)))...))))))))))	chr7:139044592-139044860(+)$1	1	210	239	12.6574
)))....))))).))).)))))).)).))	chr1:150947034-150947297(-)$1	1	200	229	14.7295
))))))).))..)).).))).)).)))).	chr1:894494-894738(-)$1	1	209	238	13.8849
..))).)..))).)....))))).)))).	chr12:53574431-53574710(+)$1	1	246	275	12.5736
)))))))...)).))....)))).)))..	chr18:43678109-43678357(-)$1	1	214	243	15.0459
)))))..).))).))))).))))).))).	chr17:57232261-57232556(-)$1	1	199	228	13.7597
))))).)))))).))))).)))).))).)	chr1:40626956-40627284(+)$1	1	255	284	14.2363
)))))...))))).)))))).)).).).)	chr6:34664393-34664666(-)$1	1	208	237	13.3998
)))))))....).)))....)))))))))	chr10:101379907-101380260(-)$1	1	316	345	14.5551
))))))))).)))....)))).)))))))	chr2:74405843-74406102(-)$1	1	200	229	13.7463
)))))).)))))....)).))))))...(	chr1:1310383-1310624(-)$1	1	90	119	13.6091
)))))).))))....)).)))....).))	chr2:61765237-61765499(-)$1	1	222	251	14.8420
)))))..).))))..)))))..).)))))	chr19:1269236-1269507(+)$1	1	103	132	15.2601
))))))...)))..))..))))).))).)	chr1:184723819-184724082(-)$1	1	207	236	16.8466
)))))).)))....)))))))).))).).	chr1:180601056-180601316(+)$1	1	213	242	14.0705
)))))).))).))))).))))).))))))	chr21:47878917-47879215(+)$1	1	154	183	12.3892
)))))))))))....)))))))).)))))	chr8:74884202-74884487(-)$1	1	124	153	14.1116
)))))...)))).)))).)))))).))).	chr9:15422774-15423066(+)$1	1	252	281	13.6759
))))))))))).....))))).)))))).	chr20:34252555-34252826(-)$1	1	189	218	14.1365
)))))).))))).)))))))))).)))))	chr3:122785815-122786174(+)$1	1	281	310	17.9784
)))))).))..))))))))))))))))))	chr1:202976424-202976705(+)$1	1	251	280	13.4538
))))))...))).))..))).))).))))	chr10:7830054-7830326(+)$1	1	232	261	15.1838
))))))...)))))).)).)).))).)))	chr3:42845817-42846087(-)$1	1	182	211	14.0007
))))))).)))..))..)))))).)))((	chr17:43024913-43025181(-)$1	1	196	225	13.6662
)))))).)..)))))))))))..))))))	chr1:11072611-11072901(+)$1	1	250	279	13.0582
)))))))))))).))))))..)).)))))	chr15:66797037-66797284(-)$1	1	175	204	13.5166
))))))).)))..))....)))).))))(	chr16:30662130-30662417(+)$1	1	231	260	14.6612
))))))..))))..)).)))))..)).))	chr2:170440775-170441069(+)$1	1	230	259	14.4343
)))))...))))...))....)))).)))	chr10:103578019-103578291(-)$1	1	229	258	14.6813
)))))))))))).))))))))).))))))	chr6:31704054-31704312(-)$1	1	167	196	11.8431
))))).)))))).)..))..))..)))))	chr22:19419049-19419362(-)$1	1	178	207	12.9555
)))..).)).)).)))).))))).))(((	chr1:109289227-109289509(+)$1	1	117	146	15.5838
)))))).))))).)))))))..))))..)	chr7:44887469-44887718(-)$1	1	214	243	16.2135
))))).))...)))))..))))).))).)	chrX:153686525-153686889(+)$1	1	329	358	16.2955
))))))...))).))...))))....)))	chr7:50860986-50861256(-)$1	1	152	181	13.9546
)))))).).)).))))))))..).)))))	chr16:9185473-9185734(+)$1	1	216	245	16.1409
..)))).))))).).)))).).).)))))	chr19:6739607-6739900(+)$1	1	215	244	12.1114
)..)))..)))).)))).)))))...)))	chr1:201798183-201798499(+)$1	1	283	312	12.8182
)))))))....))..))).))))))))).	chr20:2451256-2451536(-)$1	1	251	280	14.8780
)))))))...)).))))))))))).))))	chr21:38445482-38445750(+)$1	1	238	267	12.3126
)))))).))..)))).)))..)))).)))	chr11:62432687-62432933(+)$1	1	138	167	14.6171
)))))))))))....))).))))))...)	chr4:56262028-56262277(+)$1	1	151	180	14.7641
)))))....)).))....))))).).)).	chr7:77166501-77166742(+)$1	1	202	231	16.4554
)))))).))))))))..)))))).)))))	chr22:50699870-50700236(-)$1	1	286	315	14.1132
)))))).)))))..))..)..)))).)))	chr2:28974739-28975051(+)$1	1	232	261	16.7661
)))))).))))...))))))))..))).)	chr21:35287924-35288197(-)$1	1	240	269	15.2154
.))))).)))))...)))))).)))))..	chr2:183902904-183903208(-)$1	1	122	151	12.7130
))))))..)))).....))))))..))))	chr4:174089817-174090082(+)$1	1	219	248	14.3198
)))))).))))))))..))))))))))))	chr12:7052894-7053148(+)$1	1	216	245	13.6099
)))))))))))))).))).)))).)))))	chr7:104654568-104654825(+)$1	1	228	257	11.9724
)))))..)))))..))))))))).)))))	chr3:183602431-183602779(-)$1	1	299	328	14.1216
)))))...))))...)).))))).)))))	chr19:15442557-15442794(-)$1	1	193	222	16.0875

#PSSM
F : 0.32	G : 0.23	I : 0.12	H : 0.10	J : 0.07	E : 0.03	c : 0.03	: : 0.03	? : 0.01	f : 0.01	
F : 0.32	G : 0.24	H : 0.10	I : 0.10	J : 0.07	E : 0.07	? : 0.01	D : 0.01	: : 0.01	Y : 0.01	
F : 0.32	G : 0.23	I : 0.10	H : 0.08	J : 0.07	E : 0.07	C : 0.03	D : 0.03	Y : 0.01	A : 0.01	
F : 0.32	G : 0.21	I : 0.10	H : 0.07	J : 0.07	C : 0.07	E : 0.07	D : 0.03	~ : 0.01	Y : 0.01	
F : 0.32	G : 0.21	I : 0.10	H : 0.07	J : 0.07	C : 0.07	E : 0.07	D : 0.03	~ : 0.01	Y : 0.01	
F : 0.23	G : 0.19	H : 0.07	I : 0.07	J : 0.07	} : 0.07	Z : 0.07	Y : 0.05	D : 0.03	~ : 0.03	E : 0.03	C : 0.03	A : 0.01	
} : 0.33	Z : 0.14	Y : 0.10	G : 0.07	H : 0.05	I : 0.05	B : 0.05	D : 0.03	~ : 0.03	J : 0.03	E : 0.03	A : 0.01	C : 0.01	
E : 0.24	Z : 0.19	B : 0.10	D : 0.08	} : 0.07	Y : 0.07	A : 0.07	~ : 0.05	C : 0.05	H : 0.01	G : 0.01	
E : 0.26	D : 0.24	Z : 0.14	C : 0.10	B : 0.08	} : 0.05	~ : 0.05	Y : 0.03	
E : 0.26	D : 0.24	C : 0.16	Z : 0.07	B : 0.07	Y : 0.07	~ : 0.03	} : 0.03	A : 0.01	F : 0.01	
E : 0.28	D : 0.24	C : 0.14	B : 0.12	Y : 0.08	~ : 0.05	} : 0.01	F : 0.01	Z : 0.01	
E : 0.26	D : 0.26	B : 0.10	C : 0.10	Y : 0.07	~ : 0.07	} : 0.03	A : 0.01	? : 0.01	F : 0.01	Z : 0.01	
} : 0.35	D : 0.10	Y : 0.10	~ : 0.08	C : 0.07	B : 0.07	Z : 0.07	E : 0.05	F : 0.03	? : 0.03	
B : 0.17	D : 0.16	E : 0.10	C : 0.10	~ : 0.10	Y : 0.10	Z : 0.07	F : 0.05	A : 0.05	? : 0.03	} : 0.01	
B : 0.19	D : 0.14	C : 0.12	~ : 0.12	E : 0.10	F : 0.08	} : 0.05	Y : 0.05	Z : 0.05	? : 0.03	I : 0.01	
C : 0.14	E : 0.12	F : 0.12	B : 0.12	Y : 0.10	~ : 0.10	D : 0.08	} : 0.05	A : 0.03	? : 0.03	I : 0.03	Z : 0.01	
Y : 0.14	E : 0.12	F : 0.12	~ : 0.10	C : 0.10	B : 0.10	D : 0.08	} : 0.07	I : 0.05	Z : 0.03	A : 0.01	? : 0.01	
E : 0.21	F : 0.17	C : 0.12	} : 0.10	~ : 0.10	B : 0.07	Y : 0.05	I : 0.05	Z : 0.03	D : 0.03	J : 0.01	
E : 0.30	F : 0.16	} : 0.14	C : 0.10	~ : 0.07	D : 0.05	I : 0.05	J : 0.03	B : 0.01	Z : 0.01	Y : 0.01	A : 0.01	
E : 0.33	F : 0.17	D : 0.12	C : 0.08	Y : 0.07	J : 0.05	I : 0.05	B : 0.03	~ : 0.03	} : 0.01	
E : 0.30	D : 0.14	F : 0.14	Y : 0.10	B : 0.07	J : 0.05	} : 0.05	I : 0.05	C : 0.03	~ : 0.01	A : 0.01	
E : 0.28	D : 0.17	B : 0.10	} : 0.08	F : 0.08	Y : 0.07	J : 0.05	I : 0.05	C : 0.03	Z : 0.01	~ : 0.01	
E : 0.21	D : 0.17	F : 0.10	A : 0.07	B : 0.07	C : 0.07	Y : 0.07	J : 0.05	} : 0.05	I : 0.05	~ : 0.03	Z : 0.01	
} : 0.42	D : 0.08	C : 0.08	Y : 0.07	J : 0.05	E : 0.05	F : 0.05	I : 0.05	Z : 0.03	~ : 0.03	G : 0.03	
C : 0.21	D : 0.14	F : 0.10	E : 0.10	J : 0.08	} : 0.07	B : 0.05	G : 0.05	A : 0.03	~ : 0.03	I : 0.03	H : 0.01	Z : 0.01	Y : 0.01	
C : 0.21	E : 0.14	D : 0.10	} : 0.10	J : 0.08	F : 0.07	B : 0.07	G : 0.05	H : 0.03	Z : 0.03	: : 0.01	A : 0.01	I : 0.01	~ : 0.01	
C : 0.19	E : 0.16	F : 0.10	D : 0.10	J : 0.08	} : 0.07	G : 0.07	H : 0.05	I : 0.03	B : 0.03	A : 0.01	: : 0.01	Y : 0.01	Z : 0.01	
E : 0.14	D : 0.14	F : 0.12	J : 0.08	} : 0.08	: : 0.07	H : 0.07	G : 0.07	C : 0.05	A : 0.03	I : 0.03	b : 0.01	Y : 0.01	Z : 0.01	B : 0.01	
E : 0.14	F : 0.12	: : 0.10	D : 0.10	J : 0.08	H : 0.08	G : 0.07	C : 0.05	c : 0.03	~ : 0.03	B : 0.03	I : 0.03	} : 0.01	e : 0.01	Y : 0.01	b : 0.01	

#score	797.7629499042356
#seq	56
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_UTR_m3_run2.txt

#BEAR
eeeeemmmmeeeee]	chr1:17734911-17735149(-)$1	238	153	168	11.2193
eeeeemmmmeeeee:	chr21:47610226-47610510(-)$1	284	181	196	10.5412
eeeeemmmmeeeeef	chr12:56365593-56365826(+)$1	233	58	73	10.9728
eeeeennnnneeeee	chr3:48556535-48556787(-)$1	252	112	127	9.8076
eeeeemmmmeeeee4	chr14:74185040-74185301(-)$1	261	180	195	11.2224
eeeeemmmmeeeee:	chr12:122626337-122626584(+)$1	247	34	49	10.5412
eeeeemmmmeeeeed	chr17:37076032-37076366(+)$1	334	176	191	11.0202
eeeeeooooooeeee	chr7:44424401-44424653(-)$1	252	30	45	9.8806
eeeeemmmmeeeee9	chr16:2036324-2036567(+)$1	243	59	74	10.7278
eeeeennnnneeeee	chr21:47609112-47609365(-)$1	253	207	222	9.8076
!eeeeellleeeee2	chr16:88762922-88763173(-)$1	251	5	20	9.1091
eeeeemmmmeeeeee	chr10:106072739-106073039(-)$1	300	70	85	11.2517
eeeeemmmmeeeeef	chr16:31501591-31501871(-)$1	280	114	129	10.9728
eeeeemmmmeeeee:	chr9:37503375-37503688(+)$1	313	89	104	10.5412
eeeeemmmmeeeeec	chr1:11849358-11849599(-)$1	241	153	168	11.0324
eeeeemmmmeeeeeE	chr19:1577785-1578024(-)$1	239	42	57	10.2691
eeeeemmmmeeeeeF	chr19:19221997-19222386(+)$1	389	11	26	10.7839
eeeeemmmmeeeee2	chr1:17733622-17733875(-)$1	253	194	209	11.1026
[eeeeellleeeee]	chr3:47893483-47893711(-)$1	228	139	154	9.2125
eeeeeooooooeeee	chr16:29679562-29679818(+)$1	256	69	84	9.8806
eeeeennnnneeeee	chr8:41511202-41511519(-)$1	317	283	298	9.8076
eeeeemmmmeeeee]	chr4:2067219-2067461(+)$1	242	148	163	11.2193
eeeeeooooooeeee	chr19:11256594-11256856(-)$1	262	28	43	9.8806
eeeeemmmmeeeee5	chr19:6413633-6413849(-)$1	216	57	72	10.5837
eeeeennnnneeeee	chr15:64975673-64975912(+)$1	239	138	153	9.8076
eeeeemmmmeeeeeb	chr11:31453112-31453371(+)$1	259	143	158	10.8676
eeeeennnnneeeee	chr3:10193495-10193776(+)$1	281	152	167	9.8076
eeeeeooooooeeee	chr2:206986968-206987243(-)$1	275	129	144	9.8806
eeeeeooooooeeee	chr17:38077727-38078060(-)$1	333	130	145	9.8806
eeeeemmmmeeeee:	chr10:74035476-74035796(+)$1	320	304	319	10.5412
eeeeemmmmeeeee2	chr7:128143458-128143712(+)$1	254	94	109	11.1026
eeeeemmmmeeeeed	chr19:46970443-46970695(-)$1	252	150	165	11.0202
eeeeemmmmeeeee:	chrX:54587222-54587474(+)$1	252	111	126	10.5412
eeeeemmmmeeeee2	chr6:42047423-42047722(+)$1	299	198	213	11.1026
eeeeemmmmeeeee:	chr19:11561342-11561589(+)$1	247	76	91	10.5412
eeeeemmmmeeeee:	chr16:4740125-4740391(+)$1	266	218	233	10.5412
eeeeennnnneeeee	chr16:84599594-84599850(-)$1	256	226	241	9.8076
eeeeemmmmeeeeee	chr12:120534715-120534967(-)$1	252	181	196	11.2517
eeeeennnnneeeee	chr16:4506046-4506312(+)$1	266	154	169	9.8076
eeeeennnnneeeee	chr16:69358497-69358821(+)$1	324	106	121	9.8076
eeeeeooooooeeee	chr1:230416329-230416583(+)$1	254	100	115	9.8806
eeeeemmmmeeeee:	chrX:54587324-54587598(+)$1	274	9	24	10.5412
eeeeemmmmeeeee]	chr11:60690170-60690428(+)$1	258	44	59	11.2193
eeeeeooooooeeee	chr1:11847664-11847941(-)$1	277	160	175	9.8806
eeeeennnnneeeee	chr1:160967976-160968252(-)$1	276	173	188	9.8076
eeeeennnnneeeee	chr19:6414496-6414798(-)$1	302	236	251	9.8076
eeeeemmmmeeeeeb	chr12:64842782-64843075(+)$1	293	82	97	10.8676
eeeeeooooooeeee	chr16:89711145-89711409(-)$1	264	73	88	9.8806
eeeeennnnneeeee	chr9:140175265-140175563(+)$1	298	97	112	9.8076
eeeeammmma]eeee	chr17:38247859-38248088(+)$1	229	41	56	9.7860
eeeeemmmmeeeee2	chr19:1038494-1038752(+)$1	258	192	207	11.1026
eeeeemmmmeeeeed	chr11:118915750-118916034(-)$1	284	164	179	11.0202
eeeeemmmmeeeeee	chr19:18475226-18475467(+)$1	241	87	102	11.2517
eeeeennnnneeeee	chr17:40554882-40555119(-)$1	237	18	33	9.8076
eeeeeooooooeeee	chr1:11849847-11850061(-)$1	214	99	114	9.8806
eeeeemmmmeeeee:	chr1:19585490-19585752(+)$1	262	158	173	10.5412
eeeeeooooooeeee	chr3:47893542-47893770(-)$1	228	46	61	9.8806
eeeeeooooooeeee	chr12:120898940-120899294(+)$1	354	101	116	9.8806
eeeeemmmmeeeee6	chr1:27733207-27733470(-)$1	263	129	144	10.8046
eeeeemmmmeeeee2	chr16:2648395-2648645(+)$1	250	222	237	11.1026
eeeeemmmmeeeee5	chr1:36067675-36067917(-)$1	242	81	96	10.5837
eeeeemmmmeeeee2	chr11:65544193-65544562(-)$1	369	309	324	11.1026
eeeeemmmmeeeeee	chr19:11256455-11256699(-)$1	244	177	192	11.2517
!eeeeellleeeeec	chr2:32533311-32533574(+)$1	263	171	186	9.0389

#otherMatches

#Seq PSSM
CAGCCUUCUGGCUGC	chr1:17734911-17735149(-)$1	238	153	168	11.2193
CCUGCAUAUGCAGGG	chr21:47610226-47610510(-)$1	284	181	196	10.5412
UUAGUUAUUGCUGAA	chr12:56365593-56365826(+)$1	233	58	73	10.9728
GGGAGAGCCCUUCCC	chr3:48556535-48556787(-)$1	252	112	127	9.8076
UCCUCCCCAGAGGAC	chr14:74185040-74185301(-)$1	261	180	195	11.2224
CAUGUGGCCGCAUGA	chr12:122626337-122626584(+)$1	247	34	49	10.5412
GAAGAGCUGUCUUCC	chr17:37076032-37076366(+)$1	334	176	191	11.0202
GAAGACUCCCCUCUU	chr7:44424401-44424653(-)$1	252	30	45	9.8806
GGCAUCCCUGUGCCU	chr16:2036324-2036567(+)$1	243	59	74	10.7278
ACUGUACAAAACGGU	chr21:47609112-47609365(-)$1	253	207	222	9.8076
GCUGCUCCCAGCAGA	chr16:88762922-88763173(-)$1	251	5	20	9.1091
AGGGUCCCAAUCCUA	chr10:106072739-106073039(-)$1	300	70	85	11.2517
CAGCCGCCUGGCUGC	chr16:31501591-31501871(-)$1	280	114	129	10.9728
cucgggaggcugagg	chr9:37503375-37503688(+)$1	313	89	104	10.5412
GGCGGCUUCCUGUCC	chr1:11849358-11849599(-)$1	241	153	168	11.0324
UGGGGCUGCCCCCAC	chr19:1577785-1578024(-)$1	239	42	57	10.2691
GUGUCCUCCGACAUG	chr19:19221997-19222386(+)$1	389	11	26	10.7839
UCAUGUAAACGUGGC	chr1:17733622-17733875(-)$1	253	194	209	11.1026
GUGCAGAGGCUGUGG	chr3:47893483-47893711(-)$1	228	139	154	9.2125
ucccaaaaugcuggg	chr16:29679562-29679818(+)$1	256	69	84	9.8806
CCCCCAUCCCGGGGG	chr8:41511202-41511519(-)$1	317	283	298	9.8076
GAGGGAUGCUUCUCA	chr4:2067219-2067461(+)$1	242	148	163	11.2193
cuggagagaggucca	chr19:11256594-11256856(-)$1	262	28	43	9.8806
uauauauauauauau	chr19:6413633-6413849(-)$1	216	57	72	10.5837
UUUCCUCCGUGGAAG	chr15:64975673-64975912(+)$1	239	138	153	9.8076
cucgggaggcugagg	chr11:31453112-31453371(+)$1	259	143	158	10.8676
ggugagaagaucauu	chr3:10193495-10193776(+)$1	281	152	167	9.8076
ucccaaagugcuggg	chr2:206986968-206987243(-)$1	275	129	144	9.8806
AGGCUGCUGUGGGUU	chr17:38077727-38078060(-)$1	333	130	145	9.8806
UGUUUGUUAAAACAG	chr10:74035476-74035796(+)$1	320	304	319	10.5412
aaugauagcucauua	chr7:128143458-128143712(+)$1	254	94	109	11.1026
UGGUUUCCAAACUGU	chr19:46970443-46970695(-)$1	252	150	165	11.0202
gugcuuaguggcacc	chrX:54587222-54587474(+)$1	252	111	126	10.5412
UUUGGAAACUUGAAA	chr6:42047423-42047722(+)$1	299	198	213	11.1026
agcUGUCCCCAGCUU	chr19:11561342-11561589(+)$1	247	76	91	10.5412
GGCUCUGGAGGGCUG	chr16:4740125-4740391(+)$1	266	218	233	10.5412
AGCGACAAGAUCGUU	chr16:84599594-84599850(-)$1	256	226	241	9.8076
GCGGACUGAUUCGCA	chr12:120534715-120534967(-)$1	252	181	196	11.2517
AGGAUGUACAGUCCU	chr16:4506046-4506312(+)$1	266	154	169	9.8076
AGGUCACCCAGACCU	chr16:69358497-69358821(+)$1	324	106	121	9.8076
GGCAGCGAGUCCUGC	chr1:230416329-230416583(+)$1	254	100	115	9.8806
gugcuuaguggcacc	chrX:54587324-54587598(+)$1	274	9	24	10.5412
GGCCUGUGGGGGCUG	chr11:60690170-60690428(+)$1	258	44	59	11.2193
CAGCCUCUCCCGGCU	chr1:11847664-11847941(-)$1	277	160	175	9.8806
GACAUUGACUGUGUC	chr1:160967976-160968252(-)$1	276	173	188	9.8076
GCCUGUGUCCCGGGc	chr19:6414496-6414798(-)$1	302	236	251	9.8076
cucaggaggcugagg	chr12:64842782-64843075(+)$1	293	82	97	10.8676
CUUCAUUGUCUUGAG	chr16:89711145-89711409(-)$1	264	73	88	9.8806
GGCGUUUUUUGCGCC	chr9:140175265-140175563(+)$1	298	97	112	9.8076
AGAGCCUUAGCCUCU	chr17:38247859-38248088(+)$1	229	41	56	9.7860
cucagccuccugagu	chr19:1038494-1038752(+)$1	258	192	207	11.1026
CAGGCCAGUGUCUGC	chr11:118915750-118916034(-)$1	284	164	179	11.0202
cucgggaggcugagg	chr19:18475226-18475467(+)$1	241	87	102	11.2517
aaggaaaaaaUCCUU	chr17:40554882-40555119(-)$1	237	18	33	9.8076
CCCAGAUCUGCCUGG	chr1:11849847-11850061(-)$1	214	99	114	9.8806
cucaggaggcugagg	chr1:19585490-19585752(+)$1	262	158	173	10.5412
AACUGGCAAAAUAGU	chr3:47893542-47893770(-)$1	228	46	61	9.8806
augugcaucaccacg	chr12:120898940-120899294(+)$1	354	101	116	9.8806
UGGCAGCCAUGCCAG	chr1:27733207-27733470(-)$1	263	129	144	10.8046
GCCCUAGGUGGGGCC	chr16:2648395-2648645(+)$1	250	222	237	11.1026
cucagccuccugagu	chr1:36067675-36067917(-)$1	242	81	96	10.5837
AGGCCAGUGGGCCUA	chr11:65544193-65544562(-)$1	369	309	324	11.1026
ccuuauaguuaaggu	chr19:11256455-11256699(-)$1	244	177	192	11.2517
AUUAGAAUUUUUAAA	chr2:32533311-32533574(+)$1	263	171	186	9.0389

#DB
(((((....))))).	chr1:17734911-17735149(-)$1	1	153	168	11.2193
(((((....))))).	chr21:47610226-47610510(-)$1	1	181	196	10.5412
(((((....))))))	chr12:56365593-56365826(+)$1	1	58	73	10.9728
(((((.....)))))	chr3:48556535-48556787(-)$1	1	112	127	9.8076
(((((....))))).	chr14:74185040-74185301(-)$1	1	180	195	11.2224
(((((....))))).	chr12:122626337-122626584(+)$1	1	34	49	10.5412
(((((....))))))	chr17:37076032-37076366(+)$1	1	176	191	11.0202
(((((......))))	chr7:44424401-44424653(-)$1	1	30	45	9.8806
(((((....))))).	chr16:2036324-2036567(+)$1	1	59	74	10.7278
(((((.....)))))	chr21:47609112-47609365(-)$1	1	207	222	9.8076
.(((((...))))).	chr16:88762922-88763173(-)$1	1	5	20	9.1091
(((((....))))))	chr10:106072739-106073039(-)$1	1	70	85	11.2517
(((((....)))))(	chr16:31501591-31501871(-)$1	1	114	129	10.9728
(((((....))))).	chr9:37503375-37503688(+)$1	1	89	104	10.5412
(((((....))))))	chr1:11849358-11849599(-)$1	1	153	168	11.0324
(((((....))))))	chr19:1577785-1578024(-)$1	1	42	57	10.2691
(((((....)))))(	chr19:19221997-19222386(+)$1	1	11	26	10.7839
(((((....))))).	chr1:17733622-17733875(-)$1	1	194	209	11.1026
.(((((...))))).	chr3:47893483-47893711(-)$1	1	139	154	9.2125
(((((......))))	chr16:29679562-29679818(+)$1	1	69	84	9.8806
(((((.....)))))	chr8:41511202-41511519(-)$1	1	283	298	9.8076
(((((....))))).	chr4:2067219-2067461(+)$1	1	148	163	11.2193
(((((......))))	chr19:11256594-11256856(-)$1	1	28	43	9.8806
(((((....))))).	chr19:6413633-6413849(-)$1	1	57	72	10.5837
(((((.....)))))	chr15:64975673-64975912(+)$1	1	138	153	9.8076
(((((....))))))	chr11:31453112-31453371(+)$1	1	143	158	10.8676
(((((.....)))))	chr3:10193495-10193776(+)$1	1	152	167	9.8076
(((((......))))	chr2:206986968-206987243(-)$1	1	129	144	9.8806
(((((......))))	chr17:38077727-38078060(-)$1	1	130	145	9.8806
(((((....))))).	chr10:74035476-74035796(+)$1	1	304	319	10.5412
(((((....))))).	chr7:128143458-128143712(+)$1	1	94	109	11.1026
(((((....))))))	chr19:46970443-46970695(-)$1	1	150	165	11.0202
(((((....))))).	chrX:54587222-54587474(+)$1	1	111	126	10.5412
(((((....))))).	chr6:42047423-42047722(+)$1	1	198	213	11.1026
(((((....))))).	chr19:11561342-11561589(+)$1	1	76	91	10.5412
(((((....))))).	chr16:4740125-4740391(+)$1	1	218	233	10.5412
(((((.....)))))	chr16:84599594-84599850(-)$1	1	226	241	9.8076
(((((....)))))(	chr12:120534715-120534967(-)$1	1	181	196	11.2517
(((((.....)))))	chr16:4506046-4506312(+)$1	1	154	169	9.8076
(((((.....)))))	chr16:69358497-69358821(+)$1	1	106	121	9.8076
(((((......))))	chr1:230416329-230416583(+)$1	1	100	115	9.8806
(((((....))))).	chrX:54587324-54587598(+)$1	1	9	24	10.5412
(((((....))))).	chr11:60690170-60690428(+)$1	1	44	59	11.2193
(((((......))))	chr1:11847664-11847941(-)$1	1	160	175	9.8806
(((((.....)))))	chr1:160967976-160968252(-)$1	1	173	188	9.8076
(((((.....)))))	chr19:6414496-6414798(-)$1	1	236	251	9.8076
(((((....))))))	chr12:64842782-64843075(+)$1	1	82	97	10.8676
(((((......))))	chr16:89711145-89711409(-)$1	1	73	88	9.8806
(((((.....)))))	chr9:140175265-140175563(+)$1	1	97	112	9.8076
(((((....).))))	chr17:38247859-38248088(+)$1	1	41	56	9.7860
(((((....))))).	chr19:1038494-1038752(+)$1	1	192	207	11.1026
(((((....)))))(	chr11:118915750-118916034(-)$1	1	164	179	11.0202
(((((....))))))	chr19:18475226-18475467(+)$1	1	87	102	11.2517
(((((.....)))))	chr17:40554882-40555119(-)$1	1	18	33	9.8076
(((((......))))	chr1:11849847-11850061(-)$1	1	99	114	9.8806
(((((....))))).	chr1:19585490-19585752(+)$1	1	158	173	10.5412
(((((......))))	chr3:47893542-47893770(-)$1	1	46	61	9.8806
(((((......))))	chr12:120898940-120899294(+)$1	1	101	116	9.8806
(((((....))))).	chr1:27733207-27733470(-)$1	1	129	144	10.8046
(((((....))))).	chr16:2648395-2648645(+)$1	1	222	237	11.1026
(((((....))))).	chr1:36067675-36067917(-)$1	1	81	96	10.5837
(((((....))))).	chr11:65544193-65544562(-)$1	1	309	324	11.1026
(((((....)))))(	chr19:11256455-11256699(-)$1	1	177	192	11.2517
.(((((...))))))	chr2:32533311-32533574(+)$1	1	171	186	9.0389

#PSSM
e : 0.95	! : 0.03	[ : 0.01	
e : 1.00	
e : 1.00	
e : 1.00	
e : 0.98	a : 0.01	
m : 0.59	n : 0.18	o : 0.17	e : 0.04	
m : 0.59	n : 0.18	o : 0.17	l : 0.04	
m : 0.59	n : 0.18	o : 0.17	l : 0.04	
m : 0.59	n : 0.18	o : 0.17	l : 0.04	
e : 0.62	n : 0.18	o : 0.17	a : 0.01	
e : 0.81	o : 0.17	] : 0.01	
e : 1.00	
e : 1.00	
e : 1.00	
e : 0.43	: : 0.14	2 : 0.10	] : 0.06	d : 0.04	f : 0.03	c : 0.03	5 : 0.03	b : 0.03	4 : 0.01	9 : 0.01	E : 0.01	F : 0.01	6 : 0.01	

#score	666.427909446722
#seq	64
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_UTR_m2_run1.txt

#BEAR
dd[ggggggg!!cccnnnnnccc22ggggggg22d	chr3:156874634-156874964(-)$1	330	96	131	13.1404
####iiiiiiiii[ammmma]iiiiiiiii66666	chr3:10362611-10362873(-)$1	262	167	202	13.5037
[bbcccbb####cccmmmmccc333bb]ccc]bb]	chr14:102550922-102551190(-)$1	268	90	125	11.9244
===========!!bboooooobb]===========	chr1:165728659-165728921(-)$1	262	71	106	15.8865
f[a"""cccffffffmmmmffffff]ccc]a]fff	chr19:11664186-11664461(-)$1	275	127	162	10.9862
ggggg"""eeeee[bblllbb]eeeee4444gggg	chr11:2972907-2973141(-)$1	234	85	120	10.8724
e!!ffffff[ccc[ammmmaccc]ffffff4444e	chr6:27094010-27094228(-)$1	218	71	106	12.4878
!ffffff####ddddmmmmdddd333ffffff22d	chrX:102940040-102940289(-)$1	249	178	213	11.0640
ggggg"""a"""cccmmmmccc22a333ggggggg	chr12:132198558-132198893(+)$1	335	189	224	14.9698
####==========qqqqqqqq==========333	chr11:16760170-16760489(+)$1	319	109	144	12.3905
!!ffffffbb!!cccnnnnnccc22bb4444ffff	chr3:99536635-99536995(+)$1	360	159	194	11.3270
cc[ggggggg[ddddmmmmddddggggggg]cccc	chr15:69072327-69072582(-)$1	255	81	116	12.3949
iiiiiiii[bb[cccmmmmccc]bbiiiiiiiii]	chr19:19105888-19106180(-)$1	292	248	283	14.1018
d[a[bb[============================	chr19:47774837-47775127(+)$1	290	109	144	12.9411
c===========cccmmmmccc22===========	chr22:21801967-21802221(+)$1	254	131	166	16.2558
========[ffffffmmmmffffff22========	chr22:19842107-19842383(-)$1	276	218	253	13.5790
###eeeee"""ddddmmmmdddd22eeeee333ee	chr1:70694053-70694359(+)$1	306	72	107	11.5918
ggggggg[bb[cccooooooccc]bb22ggggggg	chr8:117861093-117861317(-)$1	224	131	166	13.2042
gggg[a[ccc[ddddoooooodddd22ccc]aggg	chr17:27074967-27075236(+)$1	269	155	190	12.2867
#iiiiiiiii[bboooooobb]iiiiiiiii====	chr17:48820972-48821274(+)$1	302	41	76	14.1163
!!ccc####fffffflllffffff333ccc]dddd	chr10:70525599-70525850(+)$1	251	22	57	10.8551
e[ffffffccc[cccmmmmccc]ccc]ffffff]e	chr9:139099082-139099360(-)$1	278	215	250	11.4711
e####cccccc[bboooooobb]ccc333ccc333	chr1:100174434-100174700(-)$1	266	102	137	13.6361
c####==========nnnnn==========55555	chr12:76449748-76449967(-)$1	219	178	213	12.0704
===============mmmm================	chr1:150208213-150208525(-)$1	312	113	148	16.6739
[ccc[eeeee"""bbmmmmbbeeeeecccgggggg	chr19:46195043-46195294(-)$1	251	25	60	11.0163
$$$ggggggg[ddddmmmmddddggggggg333dd	chr12:76449767-76449998(-)$1	231	136	171	12.8354
ee"""ggggggg[bbnnnnnbbggggggg4444ee	chr11:47493615-47493929(-)$1	314	160	195	12.5655
e==========ddddmmmmdddd]==========:	chr1:11085105-11085388(+)$1	283	227	262	13.9126
ggggggg[bb[cccooooooccc]bb22ggggggg	chr8:117861083-117861293(-)$1	210	107	142	13.2042
hhhhh"""a[a[cccooooooccc]a]a333hhhh	chr15:69075220-69075494(-)$1	274	9	44	12.5948
ii!!a[==========lll==========a]iiii	chr8:117861117-117861339(-)$1	222	52	87	15.5304
eeee[a"""a[cccnnnnnccc]a333a]eeeee]	chr1:52305957-52306232(-)$1	275	229	264	12.0363
:==========!!bbmmmmbb]==========FFF	chr14:21679339-21679565(-)$1	226	187	222	12.9209
"""a"""ccc!!a[ammmma]a22ccc333a22a]	chr10:103577576-103577934(-)$1	358	147	182	14.4710
!a[bb"""a[ccc[aooooooa]ccca333bb]a2	chr12:76442926-76443131(-)$1	205	109	144	13.2975
::iiiiiiiii[cccmmmmccc333iiiiiiiii:	chr6:18258440-18258737(-)$1	297	15	50	12.6962
iiiiiiiieeeeebbmmmmbb]eeeee22iiiiii	chr3:160219143-160219419(-)$1	276	26	61	11.7761
####ccc[ggggggglllggggggg333cccbbee	chr22:20937381-20937640(+)$1	259	216	251	12.5015
ccc!!cccgggggggnnnnnggggggg]ccc333c	chr2:232576551-232576778(+)$1	227	24	59	13.2034
eeeee[a[gggggggooooooggggggg333a]ee	chr8:124382090-124382367(-)$1	277	32	67	13.2465
""dddddddd!!cccooooooccc333dddd4444	chr6:31729492-31729774(+)$1	282	16	51	12.1292
=============[annnnna]=============	chr1:42643257-42643520(-)$1	263	42	77	16.0450
ggggggg$$$$$cccooooooccc22ggggggg]b	chr3:50367767-50368058(-)$1	291	122	157	12.9169
[eeeeeccc[bb[bboooooobb]bb]ccc333ee	chr20:34329962-34330272(-)$1	310	140	175	11.4217
ccc!!cccgggggggnnnnnggggggg]ccc333c	chr2:232576505-232576751(+)$1	246	70	105	13.2034
####bb!!gggggggooooooggggggg22bb333	chr9:100777601-100777856(+)$1	255	19	54	13.4652
==========eeeeennnnneeeee4444======	chr20:34302044-34302307(-)$1	263	181	216	13.3755
ddddccc!!eeeeennnnneeeee333ccc333dd	chr17:48823800-48824131(+)$1	331	12	47	10.6539
iiiiiiii####cccmmmmccc22iiiiiiiii:b	chr3:9512207-9512506(+)$1	299	66	101	13.9188
ggggg[ccc[a[a[ammmma]a]a]cccggggggg	chr19:5623271-5623508(+)$1	237	145	180	13.6246

#otherMatches

#Seq PSSM
CAGCUACAUUUACCAAAGCCUGGGUGAUGUGGAGU	chr3:156874634-156874964(-)$1	330	96	131	13.1404
CAGGGUGAAGGCCACGGUCGCGGCCUUCACGGGUU	chr3:10362611-10362873(-)$1	262	167	202	13.5037
AUCCCGACGAUAUUACUAAUGAGGAGUACGGAGAA	chr14:102550922-102551190(-)$1	268	90	125	11.9244
UUUUUACUGUGUUACUAUGUUGUUUACAGUGGAAA	chr1:165728659-165728921(-)$1	262	71	106	15.8865
GGGGUGGCCGUGAGUGUGUGCUCACAGGUACGCGG	chr19:11664186-11664461(-)$1	275	127	162	10.9862
UUUCUGUGUUUCUCCAGUUUGAAGAAGGUGAAGAA	chr11:2972907-2973141(-)$1	234	85	120	10.8724
CUCUGAAGACGAGACUGAUGCUCAUCUUUGAAAUG	chr6:27094010-27094228(-)$1	218	71	106	12.4878
uacagaaucuuggguaagugccucccuucuguccu	chrX:102940040-102940289(-)$1	249	178	213	11.0640
CUUGCAUACGGACUUGCUUGAGGAGGAGGCAAGGC	chr12:132198558-132198893(+)$1	335	189	224	14.9698
AGAGCGGCGAGAGGGUUCGGCAUUUUUCGUCGGGA	chr11:16760170-16760489(+)$1	319	109	144	12.3905
GUUCUGCCCACGUCGAGACCUGAGCUGAAAUGGCA	chr3:99536635-99536995(+)$1	360	159	194	11.3270
CCGCUUUCUUACUUUUCCAGAAGAAGAAAGGGGUC	chr15:69072327-69072582(-)$1	255	81	116	12.3949
GGUGGGAGUGGGUGGGGCCUCAGUCCUUCCACCUG	chr19:19105888-19106180(-)$1	292	248	283	14.1018
ugugugugugugugugugugugugugugugugugu	chr19:47774837-47775127(+)$1	290	109	144	12.9411
gugucuauguguggugugugCCGUAUGCAUGGGCA	chr22:21801967-21802221(+)$1	254	131	166	16.2558
GUGGGGGCACCUGGAGACAUUUGGGCCGUUCUCGC	chr22:19842107-19842383(-)$1	276	218	253	13.5790
AUCUCGUGUCUGCUUUGUUAAGUUCCAUGAUCCAG	chr1:70694053-70694359(+)$1	306	72	107	11.5918
AGGUAUUGCCGCUGUUGUCUCAGAGGAAAAUGCUU	chr8:117861093-117861317(-)$1	224	131	166	13.2042
UGCAGCAUGACUGCCCCAAGCGGCGCCUCAAGUGC	chr17:27074967-27075236(+)$1	269	155	190	12.2867
AAUAGUUGGGUUUGAAAGAAAUCUUAACUGUUUUU	chr17:48820972-48821274(+)$1	302	41	76	14.1163
GACUUGAAAUUUGAAAUAUUUAGGAAGAAGAAAGG	chr10:70525599-70525850(+)$1	251	22	57	10.8551
AAUCAUGUGUUUACUAACAAGUUGAUGACAUGGAU	chr9:139099082-139099360(-)$1	278	215	250	11.4711
AUCAACCAUCUAUGAGCAAGCAAAGACCUUGGCUU	chr1:100174434-100174700(-)$1	266	102	137	13.6361
AGUUUACUUUGAAGGGUAAACCUUUGAAGUUUAAA	chr12:76449748-76449967(-)$1	219	178	213	12.0704
uauguguguguguaugugugugcgcgcgugcgugc	chr1:150208213-150208525(-)$1	312	113	148	16.6739
ACUGGUUGGCUUUGCGCAGGCGCCAACGGAAGUGG	chr19:46195043-46195294(-)$1	251	25	60	11.0163
UUUGGUUAACUGUUUUUAAGAAUGUUGACUUGCUC	chr12:76449767-76449998(-)$1	231	136	171	12.8354
CUGAGACUGGAGUGAGAGGGUCUUCUGGUAAGUGG	chr11:47493615-47493929(-)$1	314	160	195	12.5655
CAUAGAAGGCUUUCAAUGUUGAGUGGCCUUUUAUU	chr1:11085105-11085388(+)$1	283	227	262	13.9126
AGGUAUUGCCGCUGUUGUCUCAGAGGAAAAUGCUU	chr8:117861083-117861293(-)$1	210	107	142	13.2042
CACACUGAAGACGCUACAAGGGGCCUGUGCUGUGU	chr15:69075220-69075494(-)$1	274	9	44	12.5948
GGGGGUCAUUUUUAUUCAGGAUGAAGAUGCAUCAG	chr8:117861117-117861339(-)$1	222	52	87	15.5304
agaugaguuugaugaugaacaugaugaugaucuug	chr1:52305957-52306232(-)$1	275	229	264	12.0363
CAUAGUGGGGUUUAGAAAUCUUAUCCCAUUAUUUC	chr14:21679339-21679565(-)$1	226	187	222	12.9209
GCAGGAGGAUGGUGCAGAAGGAGAGUCAAGCGACG	chr10:103577576-103577934(-)$1	358	147	182	14.4710
AGAAGAAGGAGAUGAGGAAAAUGAUCCAGACUAUG	chr12:76442926-76443131(-)$1	205	109	144	13.2975
GGGACUUUGUUCUACAUGUGUAUCUAAUAAAGUUA	chr6:18258440-18258737(-)$1	297	15	50	12.6962
GGAGAGCCAGGUUCAUCUUUGAAAUCUAGGGCUCU	chr3:160219143-160219419(-)$1	276	26	61	11.7761
GUACCCUCUUCUGUCCCAGACAGAAAAAAGGACCU	chr22:20937381-20937640(+)$1	259	216	251	12.5015
CAUGGCCUGUUUUCUGUCGAGGAGAAUGAGGAAAA	chr2:232576551-232576778(+)$1	227	24	59	13.2034
ACUCACCUAUGUUAAAAAUUGUUAACAUUUUGCUG	chr8:124382090-124382367(-)$1	277	32	67	13.2465
UUUUCUCCCUCCCCACAGGAUUGGCCAAGGGUUUC	chr6:31729492-31729774(+)$1	282	16	51	12.1292
gugugugugugcugugugugagagugugcgcgcgc	chr1:42643257-42643520(-)$1	263	42	77	16.0450
GGGGCCUGUGGAAUGAGUGUGCAUGGAGGCCCUCC	chr3:50367767-50368058(-)$1	291	122	157	12.9169
GAGCUUGUCGACGCUGUCGCAGGGGUGGAUCCUGA	chr20:34329962-34330272(-)$1	310	140	175	11.4217
CAUGGCCUGUUUUCUGUCGAGGAGAAUGAGGAAAA	chr2:232576505-232576751(+)$1	246	70	105	13.2034
AAAGUCAAUUUUUGUUACUGUACagaggaggaaga	chr9:100777601-100777856(+)$1	255	19	54	13.4652
AAUGGCAAGACUUGCAGAGGGUAAGUGUUUCUUGC	chr20:34302044-34302307(-)$1	263	181	216	13.3755
GCCUAGUCUUGUUAAUUAAUAGCAUCUACUCCAAG	chr17:48823800-48824131(+)$1	331	12	47	10.6539
CACUUCUGAGACUGGUUUCCCAAGCAGAAGUGGAG	chr3:9512207-9512506(+)$1	299	66	101	13.9188
GCCCCGAGGGCGGGCACAGGGUGGGUCUGGGGUCC	chr19:5623271-5623508(+)$1	237	145	180	13.6246

#DB
((.(((((((..(((.....)))..)))))))..)	chr3:156874634-156874964(-)$1	1	96	131	13.1404
....(((((((((.(....).))))))))).....	chr3:10362611-10362873(-)$1	1	167	202	13.5037
.(((((((....(((....)))...)).))).)).	chr14:102550922-102551190(-)$1	1	90	125	11.9244
(((((((((((..((......)).)))))))))))	chr1:165728659-165728921(-)$1	1	71	106	15.8865
(.(...(((((((((....)))))).))).).)))	chr19:11664186-11664461(-)$1	1	127	162	10.9862
(((((...(((((.((...)).)))))....))))	chr11:2972907-2973141(-)$1	1	85	120	10.8724
(..((((((.(((.(....)))).))))))....)	chr6:27094010-27094228(-)$1	1	71	106	12.4878
.((((((....((((....))))...))))))..)	chrX:102940040-102940289(-)$1	1	178	213	11.0640
(((((...(...(((....)))..)...)))))))	chr12:132198558-132198893(+)$1	1	189	224	14.9698
....((((((((((........))))))))))...	chr11:16760170-16760489(+)$1	1	109	144	12.3905
..((((((((..(((.....)))..))....))))	chr3:99536635-99536995(+)$1	1	159	194	11.3270
((.(((((((.((((....))))))))))).)))(	chr15:69072327-69072582(-)$1	1	81	116	12.3949
((((((((.((.(((....))).))))))))))).	chr19:19105888-19106180(-)$1	1	248	283	14.1018
(.(.((.((((((((((((((((((((((((((((	chr19:47774837-47775127(+)$1	1	109	144	12.9411
)((((((((((((((....)))..)))))))))))	chr22:21801967-21802221(+)$1	1	131	166	16.2558
((((((((.((((((....))))))..))))))))	chr22:19842107-19842383(-)$1	1	218	253	13.5790
...(((((...((((....))))..)))))...))	chr1:70694053-70694359(+)$1	1	72	107	11.5918
(((((((.((.(((......))).))..)))))))	chr8:117861093-117861317(-)$1	1	131	166	13.2042
((((.(.(((.((((......))))..))).))))	chr17:27074967-27075236(+)$1	1	155	190	12.2867
.(((((((((.((......)).)))))))))))))	chr17:48820972-48821274(+)$1	1	41	76	14.1163
..(((....((((((...))))))...))).))))	chr10:70525599-70525850(+)$1	1	22	57	10.8551
(.(((((((((.(((....))).))).)))))).)	chr9:139099082-139099360(-)$1	1	215	250	11.4711
(....((((((.((......)).)))...)))...	chr1:100174434-100174700(-)$1	1	102	137	13.6361
(....((((((((((.....)))))))))).....	chr12:76449748-76449967(-)$1	1	178	213	12.0704
(((((((((((((((....))))))))))))))))	chr1:150208213-150208525(-)$1	1	113	148	16.6739
.(((.(((((...((....))))))))))))))))	chr19:46195043-46195294(-)$1	1	25	60	11.0163
...(((((((.((((....)))))))))))...))	chr12:76449767-76449998(-)$1	1	136	171	12.8354
((...(((((((.((.....)))))))))....))	chr11:47493615-47493929(-)$1	1	160	195	12.5655
)((((((((((((((....)))).)))))))))).	chr1:11085105-11085388(+)$1	1	227	262	13.9126
(((((((.((.(((......))).))..)))))))	chr8:117861083-117861293(-)$1	1	107	142	13.2042
(((((...(.(.(((......))).).)...))))	chr15:69075220-69075494(-)$1	1	9	44	12.5948
((..(.((((((((((...))))))))))).))))	chr8:117861117-117861339(-)$1	1	52	87	15.5304
((((.(...(.(((.....))).)...).))))).	chr1:52305957-52306232(-)$1	1	229	264	12.0363
.((((((((((..((....)).)))))))))))))	chr14:21679339-21679565(-)$1	1	187	222	12.9209
...(...(((..(.(....).)..)))...)..).	chr10:103577576-103577934(-)$1	1	147	182	14.4710
.(.((...(.(((.(......).))))...)).).	chr12:76442926-76443131(-)$1	1	109	144	13.2975
..(((((((((.(((....)))...))))))))).	chr6:18258440-18258737(-)$1	1	15	50	12.6962
(((((((((((((((....)).)))))..))))))	chr3:160219143-160219419(-)$1	1	26	61	11.7761
....(((.(((((((...)))))))...)))))))	chr22:20937381-20937640(+)$1	1	216	251	12.5015
(((..((((((((((.....))))))).)))...)	chr2:232576551-232576778(+)$1	1	24	59	13.2034
(((((.(.(((((((......)))))))...).))	chr8:124382090-124382367(-)$1	1	32	67	13.2465
..((((((((..(((......)))...))))....	chr6:31729492-31729774(+)$1	1	16	51	12.1292
(((((((((((((.(.....).)))))))))))))	chr1:42643257-42643520(-)$1	1	42	77	16.0450
(((((((.....(((......)))..))))))).)	chr3:50367767-50368058(-)$1	1	122	157	12.9169
.((((((((.((.((......)).)).)))...))	chr20:34329962-34330272(-)$1	1	140	175	11.4217
(((..((((((((((.....))))))).)))...)	chr2:232576505-232576751(+)$1	1	70	105	13.2034
....((..(((((((......)))))))..))...	chr9:100777601-100777856(+)$1	1	19	54	13.4652
(((((((((((((((.....)))))....))))))	chr20:34302044-34302307(-)$1	1	181	216	13.3755
(((((((..(((((.....)))))...)))...))	chr17:48823800-48824131(+)$1	1	12	47	10.6539
((((((((....(((....)))..))))))))).(	chr3:9512207-9512506(+)$1	1	66	101	13.9188
(((((.(((.(.(.(....).).).))))))))))	chr19:5623271-5623508(+)$1	1	145	180	13.6246

#PSSM
g : 0.13	e : 0.13	# : 0.11	= : 0.09	c : 0.09	! : 0.07	i : 0.07	d : 0.05	[ : 0.05	: : 0.03	" : 0.03	f : 0.01	$ : 0.01	h : 0.01	
= : 0.15	# : 0.13	g : 0.13	i : 0.09	c : 0.07	e : 0.07	[ : 0.05	! : 0.05	d : 0.03	" : 0.03	b : 0.01	f : 0.01	$ : 0.01	h : 0.01	a : 0.01	: : 0.01	
= : 0.15	# : 0.13	g : 0.13	i : 0.09	c : 0.07	[ : 0.05	f : 0.05	e : 0.05	a : 0.03	! : 0.03	" : 0.03	d : 0.03	b : 0.01	$ : 0.01	h : 0.01	
g : 0.19	= : 0.15	# : 0.11	i : 0.09	f : 0.07	e : 0.07	c : 0.05	! : 0.05	" : 0.03	d : 0.03	[ : 0.01	h : 0.01	a : 0.01	b : 0.01	
g : 0.17	= : 0.17	i : 0.11	c : 0.07	f : 0.07	" : 0.05	b : 0.05	e : 0.05	[ : 0.05	# : 0.03	! : 0.03	h : 0.01	a : 0.01	d : 0.01	
= : 0.19	g : 0.13	i : 0.11	c : 0.11	" : 0.11	f : 0.07	e : 0.05	[ : 0.05	b : 0.03	a : 0.03	# : 0.01	d : 0.01	
= : 0.21	c : 0.15	g : 0.13	i : 0.11	" : 0.11	f : 0.07	[ : 0.03	e : 0.03	b : 0.01	# : 0.01	a : 0.01	d : 0.01	! : 0.01	
= : 0.23	c : 0.15	i : 0.11	" : 0.09	g : 0.07	[ : 0.07	f : 0.05	# : 0.03	e : 0.03	! : 0.03	b : 0.01	d : 0.01	$ : 0.01	
= : 0.21	g : 0.17	c : 0.13	# : 0.07	i : 0.05	e : 0.05	a : 0.05	b : 0.05	[ : 0.03	" : 0.03	f : 0.01	d : 0.01	$ : 0.01	! : 0.01	
= : 0.21	g : 0.17	[ : 0.09	e : 0.07	b : 0.07	c : 0.07	i : 0.05	# : 0.05	f : 0.05	" : 0.03	a : 0.01	d : 0.01	$ : 0.01	
= : 0.19	[ : 0.13	g : 0.11	! : 0.07	e : 0.07	c : 0.07	# : 0.05	f : 0.05	" : 0.05	i : 0.03	b : 0.03	a : 0.03	$ : 0.01	
= : 0.13	! : 0.11	d : 0.11	[ : 0.11	g : 0.11	c : 0.09	e : 0.07	f : 0.05	# : 0.03	" : 0.03	b : 0.03	i : 0.01	$ : 0.01	
c : 0.33	d : 0.11	= : 0.11	g : 0.09	e : 0.07	f : 0.05	! : 0.03	b : 0.03	[ : 0.03	a : 0.03	i : 0.01	" : 0.01	
c : 0.29	[ : 0.13	b : 0.13	d : 0.11	= : 0.09	g : 0.09	f : 0.05	e : 0.03	o : 0.01	
c : 0.23	b : 0.13	a : 0.11	d : 0.11	g : 0.09	= : 0.07	o : 0.07	f : 0.05	n : 0.03	q : 0.01	e : 0.01	
m : 0.43	o : 0.25	n : 0.19	= : 0.03	l : 0.03	b : 0.01	q : 0.01	
m : 0.43	o : 0.25	n : 0.19	l : 0.07	q : 0.01	= : 0.01	
m : 0.43	o : 0.25	n : 0.19	l : 0.07	q : 0.01	= : 0.01	
m : 0.43	o : 0.25	n : 0.19	l : 0.03	q : 0.01	= : 0.01	f : 0.01	g : 0.01	
o : 0.23	n : 0.15	c : 0.15	b : 0.09	d : 0.09	a : 0.07	f : 0.05	= : 0.05	q : 0.01	g : 0.01	e : 0.01	
c : 0.25	o : 0.17	b : 0.13	d : 0.09	= : 0.07	] : 0.05	f : 0.05	g : 0.05	e : 0.03	q : 0.01	a : 0.01	
c : 0.31	d : 0.11	] : 0.09	g : 0.09	b : 0.07	= : 0.07	f : 0.05	e : 0.05	a : 0.05	i : 0.01	q : 0.01	
c : 0.15	= : 0.13	d : 0.11	] : 0.11	g : 0.11	e : 0.09	2 : 0.07	f : 0.05	i : 0.03	3 : 0.03	b : 0.03	
g : 0.15	2 : 0.13	= : 0.13	] : 0.11	c : 0.11	e : 0.09	3 : 0.05	f : 0.05	i : 0.03	a : 0.03	b : 0.01	d : 0.01	
= : 0.19	g : 0.15	3 : 0.13	2 : 0.07	e : 0.07	b : 0.07	c : 0.07	i : 0.05	f : 0.05	] : 0.03	a : 0.01	d : 0.01	
= : 0.19	g : 0.15	3 : 0.13	i : 0.09	b : 0.09	c : 0.09	e : 0.07	2 : 0.05	] : 0.01	f : 0.01	a : 0.01	4 : 0.01	
= : 0.19	g : 0.17	3 : 0.13	i : 0.09	c : 0.07	2 : 0.07	e : 0.05	] : 0.05	b : 0.03	f : 0.03	a : 0.01	4 : 0.01	
= : 0.21	g : 0.13	c : 0.13	i : 0.09	3 : 0.09	] : 0.05	4 : 0.05	f : 0.05	2 : 0.05	a : 0.03	e : 0.01	d : 0.01	
= : 0.21	c : 0.19	g : 0.17	i : 0.09	3 : 0.09	4 : 0.05	f : 0.05	2 : 0.03	e : 0.01	] : 0.01	d : 0.01	
= : 0.21	g : 0.17	c : 0.17	i : 0.11	3 : 0.07	4 : 0.05	f : 0.05	e : 0.03	] : 0.01	a : 0.01	d : 0.01	2 : 0.01	
= : 0.19	g : 0.13	3 : 0.11	c : 0.09	i : 0.09	4 : 0.07	] : 0.07	a : 0.03	f : 0.03	b : 0.03	6 : 0.01	5 : 0.01	e : 0.01	d : 0.01	
= : 0.21	g : 0.15	3 : 0.11	i : 0.09	4 : 0.05	f : 0.05	b : 0.05	] : 0.03	c : 0.03	a : 0.03	6 : 0.01	d : 0.01	5 : 0.01	h : 0.01	e : 0.01	2 : 0.01	
= : 0.17	3 : 0.17	g : 0.15	i : 0.09	2 : 0.05	f : 0.05	4 : 0.05	b : 0.03	] : 0.03	6 : 0.01	c : 0.01	d : 0.01	5 : 0.01	h : 0.01	e : 0.01	F : 0.01	
= : 0.17	g : 0.13	e : 0.11	3 : 0.09	i : 0.07	d : 0.05	2 : 0.03	f : 0.03	4 : 0.03	] : 0.03	a : 0.03	6 : 0.01	b : 0.01	c : 0.01	5 : 0.01	h : 0.01	F : 0.01	: : 0.01	
= : 0.15	g : 0.13	e : 0.13	d : 0.09	] : 0.07	3 : 0.05	c : 0.05	f : 0.03	: : 0.03	i : 0.03	b : 0.03	6 : 0.01	5 : 0.01	h : 0.01	F : 0.01	2 : 0.01	4 : 0.01	

#score	662.2963060157908
#seq	51
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_CDS_m3_run2.txt

#BEAR
:ddddqqqqqqqqdddd:	chr2:48030463-48030718(+)$1	255	90	108	14.0981
eeeeeqqqqqqqqeeeee	chr8:48772154-48772391(-)$1	237	162	180	14.9255
gggggqqqqqqqqggggg	chr15:28436189-28436483(-)$1	294	104	122	13.0251
eeeeeqqqqqqqqeeeee	chrX:123185064-123185275(+)$1	211	27	45	14.9255
[ddddqqqqqqqqddddc	chr16:58571985-58572239(-)$1	254	46	64	15.3969
:ddddqqqqqqqqdddd:	chr8:17872106-17872440(+)$1	334	103	121	14.0981
##cccqqqqqqqqccc44	chr5:154179187-154179419(+)$1	232	75	93	13.8855
eeeeeqqqqqqqqeeeee	chr1:144921757-144922111(-)$1	354	260	278	14.9255
eeeeeqqqqqqqqeeeee	chr17:1579417-1579692(-)$1	275	14	32	14.9255
[cccaqqqqqqqqa]ccc	chrX:153580650-153580909(-)$1	259	166	184	13.3225
eeeeeqqqqqqqqeeeee	chr8:95531368-95531696(-)$1	328	144	162	14.9255
eeeeeqqqqqqqqeeeee	chr9:123201816-123202066(-)$1	250	93	111	14.9255
##cccqqqqqqqqccc33	chr1:220151790-220152022(-)$1	232	177	195	13.9235
eeeeeqqqqqqqqeeeee	chr10:120801969-120802235(-)$1	266	137	155	14.9255
dddddqqqqqqqqdddd7	chr11:62299613-62299835(-)$1	222	183	201	14.8935
$ddddqqqqqqqqdddd5	chr1:40701666-40701942(+)$1	276	161	179	14.7864
eeeeeqqqqqqqqeeeee	chr8:48798538-48798768(-)$1	230	22	40	14.9255
$ddddqqqqqqqqddddd	chr6:31751890-31752166(-)$1	276	162	180	15.1416
:ddddqqqqqqqqdddd:	chr16:58557187-58557457(-)$1	270	15	33	14.0981
!ddddqqqqqqqqdddd2	chr1:19483174-19483432(-)$1	258	137	155	15.5284
!!cccqqqqqqqqccc22	chr8:48792063-48792277(-)$1	214	60	78	13.8249
cccccqqqqqqqqccc]c	chr17:57751007-57751233(+)$1	226	23	41	13.6196
eeeeeqqqqqqqqeeeee	chr1:52301704-52301965(-)$1	261	85	103	14.9255
eeeeeqqqqqqqqeeeee	chr2:61709417-61709698(-)$1	281	36	54	14.9255
eeeeeqqqqqqqqeeeee	chr9:95040395-95040608(-)$1	213	180	198	14.9255
eeeeeqqqqqqqqeeeee	chr14:102469058-102469322(+)$1	264	38	56	14.9255
EddddqqqqqqqqddddE	chr14:102460465-102460745(+)$1	280	178	196	13.7010
bddddqqqqqqqqdddd]	chr17:1564495-1564778(-)$1	283	192	210	15.1960
!!cccqqqqqqqqccccc	chr17:1577051-1577260(-)$1	209	102	120	13.9457
!!cccqqqqqqqqccc22	chrX:153582948-153583158(-)$1	210	106	124	13.8249
""cccqqqqqqqqcccee	chr5:154193346-154193578(+)$1	232	60	78	14.0585
"ddddqqqqqqqqdddd6	chr18:29437507-29437935(-)$1	428	96	114	15.2111
dddddqqqqqqqqdddd:	chr1:52260081-52260381(-)$1	300	279	297	14.7071
"ddddqqqqqqqqddddb	chr15:63932279-63932553(-)$1	274	172	190	15.2409
eeeeeqqqqqqqqeeeee	chrX:53563474-53563700(-)$1	226	55	73	14.9255
Eddddqqqqqqqqdddd:	chr1:39903368-39903684(+)$1	316	115	133	13.9667
cddddqqqqqqqqdddd2	chrX:39914568-39914828(-)$1	260	141	159	15.2929
!!cccqqqqqqqqccc22	chr8:48719647-48719917(-)$1	270	26	44	13.8249
!ddddqqqqqqqqdddd4	chr6:64421776-64422067(+)$1	291	206	224	15.6534
:ddddqqqqqqqqdddd:	chr17:1585097-1585367(-)$1	270	101	119	14.0981
"ddddqqqqqqqqdddd2	chr8:144940594-144940891(-)$1	297	221	239	15.4754
:ddddqqqqqqqqdddd:	chr10:71151871-71152162(+)$1	291	56	74	14.0981
gddddqqqqqqqqddddD	chr17:45734128-45734382(+)$1	254	111	129	14.4084
:ddddqqqqqqqqdddd:	chr12:6701458-6701706(-)$1	248	80	98	14.0981
ddd[aqqqqqqqqadddd	chr17:26951217-26951493(-)$1	276	88	106	14.1562
c[cccqqqqqqqqccccc	chr17:80443281-80443579(+)$1	298	77	95	13.6523
eeeeeqqqqqqqqeeeee	chrX:153587318-153587574(-)$1	256	195	213	14.9255
cccccqqqqqqqqccc]c	chr17:57750957-57751207(+)$1	250	73	91	13.6196
a[cccqqqqqqqqccc]a	chrX:153588258-153588467(-)$1	209	145	163	13.8535
:ddddqqqqqqqqdddd:	chr16:58581040-58581294(-)$1	254	29	47	14.0981
eeeeeqqqqqqqqeeeee	chr17:26961882-26962208(-)$1	326	208	226	14.9255
eeeeeqqqqqqqqeeeee	chrX:53622168-53622407(-)$1	239	103	121	14.9255
eeeeeqqqqqqqqeeeee	chr16:58580993-58581240(-)$1	247	32	50	14.9255
cddddqqqqqqqqdddd:	chr12:64823771-64823997(+)$1	226	195	213	14.7785
eddddqqqqqqqqdddd3	chr11:65347449-65347725(+)$1	276	80	98	15.5884
[ddddqqqqqqqqdddd]	chr17:26942654-26942910(-)$1	256	79	97	15.5473
gggggqqqqqqqqggggg	chr19:18967657-18967930(+)$1	273	225	243	13.0251
cddddqqqqqqqqdddd:	chr11:62293608-62293840(-)$1	232	104	122	14.7785
eddddqqqqqqqqdddd:	chr17:1581737-1581974(-)$1	237	80	98	14.8933
eeeeeqqqqqqqqeeeee	chr1:19433308-19433557(-)$1	249	223	241	14.9255
eddddqqqqqqqqdddd]	chr17:26960812-26961052(-)$1	240	126	144	15.5133
eeeeeqqqqqqqqeeeee	chrX:53563500-53563719(-)$1	219	74	92	14.9255
eeeeeqqqqqqqqeeeee	chr8:48848352-48848559(-)$1	207	80	98	14.9255
a[cccqqqqqqqqccc]a	chrX:153588154-153588366(-)$1	212	44	62	13.8535
eeeeeqqqqqqqqeeeee	chr1:19505492-19505732(-)$1	240	122	140	14.9255
##cccqqqqqqqqccc33	chr1:220151787-220151990(-)$1	203	145	163	13.9235
eeeeeqqqqqqqqeeeee	chr2:114697493-114697753(+)$1	260	149	167	14.9255
eeeeeqqqqqqqqeeeee	chr1:19505582-19505813(-)$1	231	203	221	14.9255
"ddddqqqqqqqqdddd]	chr11:9463533-9463784(+)$1	251	110	128	15.5810

#otherMatches

#Seq PSSM
AACAGAUGUUUUACUGUG	chr2:48030463-48030718(+)$1	255	90	108	14.0981
GAGCUAUUCAUACAGCUC	chr8:48772154-48772391(-)$1	237	162	180	14.9255
UUUGGAGAUUUUCCCAGA	chr15:28436189-28436483(-)$1	294	104	122	13.0251
CAAAUAACUUGUCAUUUG	chrX:123185064-123185275(+)$1	211	27	45	14.9255
UAAAGAUAUUGAACUUUU	chr16:58571985-58572239(-)$1	254	46	64	15.3969
CUAACCCUUUGCCGUUAC	chr8:17872106-17872440(+)$1	334	103	121	14.0981
CCCAGCUUCUCAACUGCC	chr5:154179187-154179419(+)$1	232	75	93	13.8855
CUUGGAAACAUAACCAGG	chr1:144921757-144922111(-)$1	354	260	278	14.9255
UGUCCACCUUACAGGACG	chr17:1579417-1579692(-)$1	275	14	32	14.9255
AAGGGGAGAACCACACCU	chrX:153580650-153580909(-)$1	259	166	184	13.3225
AUGAAGCAACAAAUUUAU	chr8:95531368-95531696(-)$1	328	144	162	14.9255
CAUAAUUACAGUUUUGUG	chr9:123201816-123202066(-)$1	250	93	111	14.9255
UUGAGUUUAGAUUUUCCU	chr1:220151790-220152022(-)$1	232	177	195	13.9235
UCGUCGUGGGGCAGACGA	chr10:120801969-120802235(-)$1	266	137	155	14.9255
ACUUGAAGAUGCCCAAGA	chr11:62299613-62299835(-)$1	222	183	201	14.8935
AAGAAGCCUCAGAUUCUG	chr1:40701666-40701942(+)$1	276	161	179	14.7864
GUGCCCCAGUUAUGGUAC	chr8:48798538-48798768(-)$1	230	22	40	14.9255
AUACCAGAUACCAGGUGG	chr6:31751890-31752166(-)$1	276	162	180	15.1416
AGACUAAGUCCUAAGUCA	chr16:58557187-58557457(-)$1	270	15	33	14.0981
GCAAGGAAGACUACUUGG	chr1:19483174-19483432(-)$1	258	137	155	15.5284
CCAAGCUGUCACUCUUCU	chr8:48792063-48792277(-)$1	214	60	78	13.8249
ACCACUUAUCAUUGUGUG	chr17:57751007-57751233(+)$1	226	23	41	13.6196
CAGCGGCUCUUUGUGUUG	chr1:52301704-52301965(-)$1	261	85	103	14.9255
AUGCAUCAAUUCUUGCAU	chr2:61709417-61709698(-)$1	281	36	54	14.9255
UCUUUAGUUUUAAAAAGA	chr9:95040395-95040608(-)$1	213	180	198	14.9255
AAGGCUGACGCAUGUUUU	chr14:102469058-102469322(+)$1	264	38	56	14.9255
GUUGAACAGUAUGUCAAG	chr14:102460465-102460745(+)$1	280	178	196	13.7010
AACUGACUUUAAGCAGUA	chr17:1564495-1564778(-)$1	283	192	210	15.1960
AUUCAACGUUACCUGACA	chr17:1577051-1577260(-)$1	209	102	120	13.9457
CAGCCCCCUCUACGGUCU	chrX:153582948-153583158(-)$1	210	106	124	13.8249
UAGUGCUUCUGAUCACCU	chr5:154193346-154193578(+)$1	232	60	78	14.0585
UUUCUAAACGUCCAGAGU	chr18:29437507-29437935(-)$1	428	96	114	15.2111
UGGGGAUCAGGGACCCCG	chr1:52260081-52260381(-)$1	300	279	297	14.7071
UGUUCCAGAGGAUGAACU	chr15:63932279-63932553(-)$1	274	172	190	15.2409
UCUGCUUUCUUAUGCAGG	chrX:53563474-53563700(-)$1	226	55	73	14.9255
GGAGAAUCUUUCCUCUCG	chr1:39903368-39903684(+)$1	316	115	133	13.9667
GCUACGUACUCAGGUAGA	chrX:39914568-39914828(-)$1	260	141	159	15.2929
GUAGAUGUUUCUUUCUCA	chr8:48719647-48719917(-)$1	270	26	44	13.8249
AUGAGCAGACCAACUCAA	chr6:64421776-64422067(+)$1	291	206	224	15.6534
CCCUUUUGAUGAUGAGGA	chr17:1585097-1585367(-)$1	270	101	119	14.0981
AGGGCGUGCUGCGGCCCG	chr8:144940594-144940891(-)$1	297	221	239	15.4754
AUGGUGGAGGGGGACCAG	chr10:71151871-71152162(+)$1	291	56	74	14.0981
GGGUACAGAAACUUACCG	chr17:45734128-45734382(+)$1	254	111	129	14.4084
GAUGUGUUCAAGAACAUG	chr12:6701458-6701706(-)$1	248	80	98	14.0981
CUUACAUGUUGCAGAAGC	chr17:26951217-26951493(-)$1	276	88	106	14.1562
UGUUCAUUUUGUAGAAAC	chr17:80443281-80443579(+)$1	298	77	95	13.6523
UUGCAGGUCAAAGUGCAA	chrX:153587318-153587574(-)$1	256	195	213	14.9255
ACCACUUAUCAUUGUGUG	chr17:57750957-57751207(+)$1	250	73	91	13.6196
CAGGGACCAGAACCCCCG	chrX:153588258-153588467(-)$1	209	145	163	13.8535
UUGGUUUUGUUAUACCAU	chr16:58581040-58581294(-)$1	254	29	47	14.0981
GAUCUACUCUUAAAGGUU	chr17:26961882-26962208(-)$1	326	208	226	14.9255
GUGGGAUCUCCUGUCCGC	chrX:53622168-53622407(-)$1	239	103	121	14.9255
UAUUCUAGGACUUGGAUG	chr16:58580993-58581240(-)$1	247	32	50	14.9255
GAGAAGUUUAAAAUUCUG	chr12:64823771-64823997(+)$1	226	195	213	14.7785
UGGUCUCUCCCCUGGCCC	chr11:65347449-65347725(+)$1	276	80	98	15.5884
CCCCUCCUCUUACAGGGU	chr17:26942654-26942910(-)$1	256	79	97	15.5473
UGUUUGUCUUUUAAAACA	chr19:18967657-18967930(+)$1	273	225	243	13.0251
GACCCAAAGUGAAGGGUG	chr11:62293608-62293840(-)$1	232	104	122	14.7785
UGUAUCGAUACAAAUACA	chr17:1581737-1581974(-)$1	237	80	98	14.8933
AGAGGUAUAUCUUUCUCU	chr1:19433308-19433557(-)$1	249	223	241	14.9255
CCAUGACUUUCACUGUGA	chr17:26960812-26961052(-)$1	240	126	144	15.5133
UCUGCUUUCUUAUGCAGG	chrX:53563500-53563719(-)$1	219	74	92	14.9255
UGCUGAUUAUUUCCGGUA	chr8:48848352-48848559(-)$1	207	80	98	14.9255
CAGGGACCAGAACCCCCG	chrX:153588154-153588366(-)$1	212	44	62	13.8535
CUGGCAACAUAAAGCCAG	chr1:19505492-19505732(-)$1	240	122	140	14.9255
UUGAGUUUAGAUUUUCCU	chr1:220151787-220151990(-)$1	203	145	163	13.9235
UCCAGAACAAUCCUUGGA	chr2:114697493-114697753(+)$1	260	149	167	14.9255
CUGGCAACAUAAAGCCAG	chr1:19505582-19505813(-)$1	231	203	221	14.9255
UCCUGUGUGGUAUCAGGC	chr11:9463533-9463784(+)$1	251	110	128	15.5810

#DB
.((((........)))).	chr2:48030463-48030718(+)$1	1	90	108	14.0981
(((((........)))))	chr8:48772154-48772391(-)$1	1	162	180	14.9255
(((((........)))))	chr15:28436189-28436483(-)$1	1	104	122	13.0251
(((((........)))))	chrX:123185064-123185275(+)$1	1	27	45	14.9255
.((((........)))))	chr16:58571985-58572239(-)$1	1	46	64	15.3969
.((((........)))).	chr8:17872106-17872440(+)$1	1	103	121	14.0981
..(((........)))..	chr5:154179187-154179419(+)$1	1	75	93	13.8855
(((((........)))))	chr1:144921757-144922111(-)$1	1	260	278	14.9255
(((((........)))))	chr17:1579417-1579692(-)$1	1	14	32	14.9255
.((((........).)))	chrX:153580650-153580909(-)$1	1	166	184	13.3225
(((((........)))))	chr8:95531368-95531696(-)$1	1	144	162	14.9255
(((((........)))))	chr9:123201816-123202066(-)$1	1	93	111	14.9255
..(((........)))..	chr1:220151790-220152022(-)$1	1	177	195	13.9235
(((((........)))))	chr10:120801969-120802235(-)$1	1	137	155	14.9255
(((((........)))).	chr11:62299613-62299835(-)$1	1	183	201	14.8935
.((((........)))).	chr1:40701666-40701942(+)$1	1	161	179	14.7864
(((((........)))))	chr8:48798538-48798768(-)$1	1	22	40	14.9255
.((((........)))))	chr6:31751890-31752166(-)$1	1	162	180	15.1416
.((((........)))).	chr16:58557187-58557457(-)$1	1	15	33	14.0981
.((((........)))).	chr1:19483174-19483432(-)$1	1	137	155	15.5284
..(((........)))..	chr8:48792063-48792277(-)$1	1	60	78	13.8249
(((((........))).)	chr17:57751007-57751233(+)$1	1	23	41	13.6196
(((((........)))))	chr1:52301704-52301965(-)$1	1	85	103	14.9255
(((((........)))))	chr2:61709417-61709698(-)$1	1	36	54	14.9255
(((((........)))))	chr9:95040395-95040608(-)$1	1	180	198	14.9255
(((((........)))))	chr14:102469058-102469322(+)$1	1	38	56	14.9255
)((((........)))))	chr14:102460465-102460745(+)$1	1	178	196	13.7010
(((((........)))).	chr17:1564495-1564778(-)$1	1	192	210	15.1960
..(((........)))))	chr17:1577051-1577260(-)$1	1	102	120	13.9457
..(((........)))..	chrX:153582948-153583158(-)$1	1	106	124	13.8249
..(((........)))))	chr5:154193346-154193578(+)$1	1	60	78	14.0585
.((((........)))).	chr18:29437507-29437935(-)$1	1	96	114	15.2111
)((((........)))).	chr1:52260081-52260381(-)$1	1	279	297	14.7071
.((((........)))))	chr15:63932279-63932553(-)$1	1	172	190	15.2409
(((((........)))))	chrX:53563474-53563700(-)$1	1	55	73	14.9255
(((((........)))).	chr1:39903368-39903684(+)$1	1	115	133	13.9667
(((((........)))).	chrX:39914568-39914828(-)$1	1	141	159	15.2929
..(((........)))..	chr8:48719647-48719917(-)$1	1	26	44	13.8249
.((((........)))).	chr6:64421776-64422067(+)$1	1	206	224	15.6534
.((((........)))).	chr17:1585097-1585367(-)$1	1	101	119	14.0981
.((((........)))).	chr8:144940594-144940891(-)$1	1	221	239	15.4754
.((((........)))).	chr10:71151871-71152162(+)$1	1	56	74	14.0981
)((((........)))))	chr17:45734128-45734382(+)$1	1	111	129	14.4084
.((((........)))).	chr12:6701458-6701706(-)$1	1	80	98	14.0981
(((.(........)))))	chr17:26951217-26951493(-)$1	1	88	106	14.1562
(.(((........)))))	chr17:80443281-80443579(+)$1	1	77	95	13.6523
(((((........)))))	chrX:153587318-153587574(-)$1	1	195	213	14.9255
(((((........))).)	chr17:57750957-57751207(+)$1	1	73	91	13.6196
(.(((........))).)	chrX:153588258-153588467(-)$1	1	145	163	13.8535
.((((........)))).	chr16:58581040-58581294(-)$1	1	29	47	14.0981
(((((........)))))	chr17:26961882-26962208(-)$1	1	208	226	14.9255
(((((........)))))	chrX:53622168-53622407(-)$1	1	103	121	14.9255
(((((........)))))	chr16:58580993-58581240(-)$1	1	32	50	14.9255
)((((........)))).	chr12:64823771-64823997(+)$1	1	195	213	14.7785
(((((........)))).	chr11:65347449-65347725(+)$1	1	80	98	15.5884
.((((........)))).	chr17:26942654-26942910(-)$1	1	79	97	15.5473
(((((........)))))	chr19:18967657-18967930(+)$1	1	225	243	13.0251
)((((........)))).	chr11:62293608-62293840(-)$1	1	104	122	14.7785
)((((........)))).	chr17:1581737-1581974(-)$1	1	80	98	14.8933
(((((........)))))	chr1:19433308-19433557(-)$1	1	223	241	14.9255
(((((........)))).	chr17:26960812-26961052(-)$1	1	126	144	15.5133
(((((........)))))	chrX:53563500-53563719(-)$1	1	74	92	14.9255
(((((........)))))	chr8:48848352-48848559(-)$1	1	80	98	14.9255
(.(((........))).)	chrX:153588154-153588366(-)$1	1	44	62	13.8535
(((((........)))))	chr1:19505492-19505732(-)$1	1	122	140	14.9255
..(((........)))..	chr1:220151787-220151990(-)$1	1	145	163	13.9235
(((((........)))))	chr2:114697493-114697753(+)$1	1	149	167	14.9255
(((((........)))))	chr1:19505582-19505813(-)$1	1	203	221	14.9255
.((((........)))).	chr11:9463533-9463784(+)$1	1	110	128	15.5810

#PSSM
e : 0.37	: : 0.10	! : 0.08	c : 0.08	" : 0.07	g : 0.04	[ : 0.04	# : 0.04	d : 0.04	$ : 0.02	E : 0.02	a : 0.02	b : 0.01	
d : 0.43	e : 0.33	! : 0.05	# : 0.04	c : 0.04	[ : 0.04	g : 0.02	" : 0.01	
d : 0.43	e : 0.33	c : 0.20	g : 0.02	
d : 0.42	e : 0.33	c : 0.20	g : 0.02	[ : 0.01	
d : 0.42	e : 0.33	c : 0.18	g : 0.02	a : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.42	e : 0.33	c : 0.18	g : 0.02	a : 0.02	
d : 0.43	e : 0.33	c : 0.18	g : 0.02	] : 0.01	
d : 0.43	e : 0.33	c : 0.20	g : 0.02	
d : 0.43	e : 0.34	] : 0.05	c : 0.04	2 : 0.04	g : 0.02	3 : 0.02	4 : 0.01	
e : 0.34	: : 0.17	c : 0.08	2 : 0.08	] : 0.05	3 : 0.04	g : 0.02	4 : 0.02	d : 0.02	a : 0.02	7 : 0.01	5 : 0.01	E : 0.01	6 : 0.01	b : 0.01	D : 0.01	

#score	1006.5943944754132
#seq	69
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_transcript_m1_run1.txt

#BEAR
"dddd"""ccc!!eeeeeooooooeeeee22cccdddd33	chr19:3694190-3694414(-)$1	224	5	45	12.4363
iiiiiiiiiggggggg!!bblllbb22ggggggg333iii	chr22:50039284-50039538(-)$1	254	140	180	12.9634
gggggg[ddddccc[a[bbnnnnnbba]ccc]dddd333g	chr12:133272035-133272284(+)$1	249	130	170	14.5367
==========[ccc[eeeeellleeeee]ccc========	chr20:60722702-60722949(+)$1	247	170	210	15.0345
eee!!ccc!!ccc"""cccnnnnnccc]ccc]ccc22eee	chr9:138831142-138831409(-)$1	267	97	137	16.1323
cggggggg####bb[ddddnnnnndddd]bb333gggggg	chr16:1510604-1510887(-)$1	283	211	251	15.5623
[a[============a[ccca!!dddd[a!!=========	chr9:139560092-139560350(+)$1	258	127	167	12.4677
bb[ggggggg####eeeeeooooooeeeee4444gggggg	chr1:47689868-47690095(-)$1	227	48	88	14.6883
###ggggggg[ccc[cccooooooccc]ccc]ggggggg6	chr17:7476808-7477074(+)$1	266	125	165	15.8909
fffffffffff!!ccccccnnnnnccc]cccffffff333	chr11:68228195-68228456(+)$1	261	168	208	14.7498
eeeee[a!!iiiiiiiiiooooooiiiiiiiii22aeeee	chr19:2336597-2336846(+)$1	249	144	184	13.7077
===========ccc!!ddddllldddd]ccc]========	chr16:88577284-88577529(+)$1	245	28	68	16.1099
eee####ddddccc[ddddnnnnndddd]ccc]dddd333	chr3:128208890-128209150(+)$1	260	5	45	14.7313
###bb[dddd!!ccc[cccnnnnncccccc4444dddd]b	chr20:35483513-35483760(-)$1	247	17	57	14.8215
dd[aeeeeeccc####ddddoooooodddd333ccc]eee	chr12:133106946-133107200(+)$1	254	165	205	13.0648
ccbb[bb"""ccc[eeeeennnnneeeee]ccc]bb]bb]	chr7:150787014-150787264(+)$1	250	26	66	12.7351
gggggg[==========[bbmmmmbb]==========]gg	chr3:14989009-14989269(-)$1	260	154	194	13.7372
dd[ccc!!a[dddd[cccoooooocccdddd]a22cccdd	chr3:128215960-128216186(+)$1	226	19	59	13.8033
4ccc:ccc[==========nnnnn==========]ccc:E	chr5:139029579-139029827(+)$1	248	58	98	13.2316
dd[a[accc[ggggggg[bbmmmmbb]gggggggccc]a]	chr16:3767279-3767620(-)$1	341	181	221	12.3385
"""a[dddd!!gggggggooooooggggggg333dddd]a	chr19:18547928-18548199(-)$1	271	103	143	14.0373
bb####iiiiiiiii[cccmmmmccc]iiiiiiiii333b	chr19:1412129-1412390(+)$1	261	20	60	14.4211
eeebb!!ggggggg[ddddnnnnndddd]ggggggg]bb]	chr22:20004133-20004419(-)$1	286	236	276	15.5455
bb[===========!!cccnnnnnccc===========22	chr22:50037566-50037836(-)$1	270	70	110	18.6840
bb[dddd"""a[ccca[bboooooobb]a]ccc]adddd2	chr7:44836303-44836596(+)$1	293	61	101	12.0506
f!!a!!ccc####a[ddddnnnnndddd]a333ccc22a2	chr5:134260118-134260369(+)$1	251	152	192	16.5561
b!!ggggggg[dddd[ccclllcccddddggggggg22bb	chr1:27893712-27893967(-)$1	255	122	162	12.9554
==[bb!!ccc####eeeeellleeeeeccc22bb]=====	chr4:709072-709409(+)$1	337	64	104	12.9571
a:=========="""ddddnnnnndddd333=========	chr9:140411085-140411367(-)$1	282	133	173	17.3908
cgggggggeeeee"""cccooooooccc]eeeee]ggggg	chr22:20067823-20068095(+)$1	272	160	200	14.6898
bb[bb[eeeeedddd[cccnnnnnccc]dddd333eeeee	chr17:76118855-76119099(-)$1	244	168	208	13.9671
ee[bb[ccc[dddd!!cccnnnnnccc22dddd]ccc]bb	chr19:2201463-2201795(+)$1	332	117	157	14.7714
ggggggcccbb"""eeeeennnnneeeee22bb]ccc]gg	chr8:1779908-1780219(+)$1	311	119	159	13.7861
eee[a[bb!!bb!!eeeeeooooooeeeee22bb]bb]a]	chr2:10538211-10538458(+)$1	247	98	138	12.1118
''ggggggg[bb!!ccc[aooooooa]ccc22bb22gggg	chr7:1492364-1492630(-)$1	266	136	176	12.3902
bb[iiiiiiiii[ddddccclllccc]ddddiiiiiiiii	chr22:50031804-50032042(-)$1	238	106	146	14.4278
dd[ccc[ffffff"""cccnnnnncccffffffccc]ddd	chr22:20111034-20111288(+)$1	254	138	178	14.7620
ggggggccc[ccc[cccccclllccc22ccc]cccccc]g	chr2:54197770-54198043(-)$1	273	153	193	13.9910
ffff[ffffff####cccooooooccc22fffffffffff	chr1:12644556-12644773(-)$1	217	49	89	12.6782
====eeeee[bb!!eeeeennnnneeeee333bb]eeeee	chr22:26985832-26986087(-)$1	255	51	91	13.7618
bb[ccceeeee[ccc[cccnnnnnccc]ccceeeee]ccc	chr22:49970313-49970548(-)$1	235	95	135	15.2453
dd[dddd[eeeee!!ddddnnnnndddd]eeeeedddd]d	chr22:49927110-49927381(-)$1	271	112	152	13.5768
eeeeeiiiiiiiii!!cccnnnnnccc22iiiiiiiii55	chr5:176738850-176739091(-)$1	241	160	200	15.5909
dddd$$$$$ggggggg[ccclllccc333ggggggg4444	chr19:46701111-46701358(-)$1	247	169	209	12.9152
==========eeeee[cccmmmmccc]eeeee]=======	chr16:87773808-87774044(-)$1	236	125	165	13.8935
cc"""ffffff$$$$$cccnnnnnccc]ffffffccc333	chr19:14875048-14875341(-)$1	293	169	209	15.0449
c!!bb[a[ggggggg[cccnnnnnccc]ggggggg]a]bb	chr9:94711307-94711555(-)$1	248	33	73	16.4003
dd"""gggggggbbddddoooooodddd]bb]ggggggg]	chr17:73891781-73892041(-)$1	260	119	159	14.2130
[eeeee[dddd[bb[cccooooooccc22bb]dddd]eee	chrM:14249-14477(-)$1	228	103	143	12.2107
cc[ccciiiiiiiiieeeeemmmmeeeee]iiiiiiiii2	chr19:576875-577113(+)$1	238	31	71	13.1790
dd[iiiiiiiiigggggggnnnnnggggggg]iiiiiiii	chr4:140098113-140098347(-)$1	234	40	80	16.8314
ffffggggggg####ddddnnnnndddd333gggggggbb	chr19:18548148-18548396(-)$1	248	139	179	15.7702
[a[ccc[ggggggg"""bbrrrrrrrrrbb333ggggggg	chr15:90132041-90132303(+)$1	262	87	127	12.1577
ffffffffaggggggg[bbnnnnnbb]ggggggg]a]fff	chr20:361825-362062(+)$1	237	72	112	13.4944
ee[ccc[eeeee[ccccccnnnnnccc]ccceeeee]ccc	chr2:242691304-242691598(+)$1	294	136	176	15.3474
iiiiiiiiieeeee[ddddnnnnnddddeeeee22iiiii	chr13:92001148-92001427(+)$1	279	128	168	15.0081
dd!!ccc[a[eeeee[cccooooooccc]eeeeeaccc33	chr1:46768347-46768602(-)$1	255	3	43	14.4170
[a[a[dddd!!ccc[ddddmmmmdddd]ccc22dddd]a]	chr16:89028422-89028666(-)$1	244	131	171	12.4103

#otherMatches

#Seq PSSM
AGCCCAGGCACUGUGGCAGGUGUGUGCCGAUGUGGGGUGA	chr19:3694190-3694414(-)$1	224	5	45	12.4363
UUUCUCCGUUCUAGAAAUUCCUUGAUCUUCUAGGUUAAUG	chr22:50039284-50039538(-)$1	254	140	180	12.9634
guuagCACAGGCGUGCACACGUGCUGGGACGACCUGGAAG	chr12:133272035-133272284(+)$1	249	130	170	14.5367
GCCCUACCCCAUGUCCUUGGUACCCAGGUGCGGGGGUGGG	chr20:60722702-60722949(+)$1	247	170	210	15.0345
ugugggcuguggugagugagugugucaggcugggcgagug	chr9:138831142-138831409(-)$1	267	97	137	16.1323
GGCCGUGAGACGUCUCUGGGAUGUCCAGUGAACAUCAUGG	chr16:1510604-1510887(-)$1	283	211	251	15.5623
gcgggcucgggcggcaguggcggcggcgcgugcgcgcccc	chr9:139560092-139560350(+)$1	258	127	167	12.4677
UCACCUCUGCUUCUGCAUAUGUGCCUGUGUUUGUGUGGAG	chr1:47689868-47690095(-)$1	227	48	88	14.6883
GACGCCGCCGGGUGGUCGAGGGAGCGAGCACAUGGUGGCC	chr17:7476808-7477074(+)$1	266	125	165	15.8909
GGGGCCCCUCCACCUGGCCUCAGCGGCUCAGGGAGGGAAC	chr11:68228195-68228456(+)$1	261	168	208	14.7498
GGCuguguaugugugcacgugugugugcaugcacuccagc	chr19:2336597-2336846(+)$1	249	144	184	13.7077
GCCUGGCUGAGGCUCGGUCCGUGGGGCAGGUACUCAGUUG	chr16:88577284-88577529(+)$1	245	28	68	16.1099
GUCCCUCGGGAAAGCAGGUAAUUCGCCUUUUUCUCCCACC	chr3:128208890-128209150(+)$1	260	5	45	14.7313
ugugaucuggagccaagcugacugggcuggaaucccagcu	chr20:35483513-35483760(-)$1	247	17	57	14.8215
GGUCCCCAGGGCACCUGGGUCUCUCUGCCCUGAGCCACUG	chr12:133106946-133107200(+)$1	254	165	205	13.0648
CUUCCGGCUUGGCACUCACCUGCAGUGAGCGCUCCCUGAC	chr7:150787014-150787264(+)$1	250	26	66	12.7351
cgcUGGUAGGAGGAGGGCGAAUGUUCUUCUUCCUCUUCCC	chr3:14989009-14989269(-)$1	260	154	194	13.7372
GAAUGCAAGCCCGCGUGUCCGAGUGCAGCGGAUGAGCAUC	chr3:128215960-128216186(+)$1	226	19	59	13.8033
GCCCAAAGUGGGAGCAAGAUCUCUUUUUGUUCUUUUUUCC	chr5:139029579-139029827(+)$1	248	58	98	13.2316
UGGCGGCCGUGCCGGGAGGUGAGGGCGUCCUGGCUGGACG	chr16:3767279-3767620(-)$1	341	181	221	12.3385
UAAGGUGCCGGAGGUCUCAGGGGAGGGGCCUGGGGGCAGC	chr19:18547928-18548199(-)$1	271	103	143	14.0373
GUUCCAGUUCACGGACCGCUCCUGUGUUCUGUGGACCCCA	chr19:1412129-1412390(+)$1	261	20	60	14.4211
GCGCCAACGGACCCGGGGAAGCCCUUCUGGGGUCCGAGGC	chr22:20004133-20004419(-)$1	286	236	276	15.5455
CUGGGGGUCAGGGUGAGCAGGGGAUGCACUUUGGCCCUGG	chr22:50037566-50037836(-)$1	270	70	110	18.6840
CGAGCCCUUGGGCCGCGUCUCCUUUGAGGUCGGGCGGGCG	chr7:44836303-44836596(+)$1	293	61	101	12.0506
AGUAGUUACUGGUUGAACAUUGUUUGUUGGUGUGUAUAUU	chr5:134260118-134260369(+)$1	251	152	192	16.5561
GACUUGGAGGAGCGGGCGCCCCGCGCUGCCCUCUGACCCA	chr1:27893712-27893967(-)$1	255	122	162	12.9554
CUGGGACCUUGUAGACACUGUGAGUGUGAGAACCGGGCAU	chr4:709072-709409(+)$1	337	64	104	12.9571
gcaguggugugguacuggcucacugccacccccaugucac	chr9:140411085-140411367(-)$1	282	133	173	17.3908
ccgccucccuccgggaccgaggccgcgggcggggcggggg	chr22:20067823-20068095(+)$1	272	160	200	14.6898
GGUGGUGGGGUCUGGCUGCCCAGAGCAUCCGGUCUGCCUU	chr17:76118855-76119099(-)$1	244	168	208	13.9671
GCUGUGCCCGCCGGCGGGUGUUCUGCCAUCUGGAGGGAAU	chr19:2201463-2201795(+)$1	332	117	157	14.7714
gcuguggcccugGGUCAGGAGUGCCCUGGAGGGUGGCACA	chr8:1779908-1780219(+)$1	311	119	159	13.7861
GGGGGAGGGACAUUUGGGGACAGAGCCCCAUCUGGCCAUG	chr2:10538211-10538458(+)$1	247	98	138	12.1118
GCCGGGGUGGUGCAGCCCAGUUGAAUAGGCCUCAAACGCC	chr7:1492364-1492630(-)$1	266	136	176	12.3902
UGAGGCUGGGCUGAUCAUUCAGGGAGCUGAUGGCCCAGCC	chr22:50031804-50032042(-)$1	238	106	146	14.4278
CCUGGGCGCCUCUGAAGCUACAUAAGUAGAGGCCCUUGGG	chr22:20111034-20111288(+)$1	254	138	178	14.7620
Agcccccggagccgggcgggcgucccgagccgggcccgcg	chr2:54197770-54198043(-)$1	273	153	193	13.9910
GGGCGCCCAGGUAGACUUGAGUGGAAGGUUCUGGGGCCCU	chr1:12644556-12644773(-)$1	217	49	89	12.6782
CCUCGCCGCGUCUCGCCACGGUAGGUGGCCCUGGGGCGGC	chr22:26985832-26986087(-)$1	255	51	91	13.7618
CGGGAAGGUGUGUGCGGGGCUGGUCUUGGCAGCACCAUUC	chr22:49970313-49970548(-)$1	235	95	135	15.2453
GAGCGGGUGGGGCAGCGCGUCCUCCGUGAGUCCUCCUGGU	chr22:49927110-49927381(-)$1	271	112	152	13.5768
cUGUGUUUGUUGCACCGUGUCAGUUACUUUGUAACAAAAG	chr5:176738850-176739091(-)$1	241	160	200	15.5909
gucacuuaagcucaggaguucaagacaagccugggcaaca	chr19:46701111-46701358(-)$1	247	169	209	12.9152
CGGUGGUCCCCUCGGGAUGCACACAUGUCGGGUGGGAUCA	chr16:87773808-87774044(-)$1	236	125	165	13.8935
AGCCAAGUGACCACACCUGUAUAUCAGUGUUACUCUCAUC	chr19:14875048-14875341(-)$1	293	169	209	15.0449
CUCUCCCCCACCGCUCUGGGGUGGCCGAAGUGGUGUGUGA	chr9:94711307-94711555(-)$1	248	33	73	16.4003
GCUAUGGGGGCUGUUGGUaaauggaucagacgagcucccu	chr17:73891781-73892041(-)$1	260	119	159	14.2130
GGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUGG	chrM:14249-14477(-)$1	228	103	143	12.2107
GUGUGCACGCAUAUGCACguguguauguguuguguguguu	chr19:576875-577113(+)$1	238	31	71	13.1790
cgcgggcgggggucgcugcgcggggcggcgAGCCUCUGUU	chr4:140098113-140098347(-)$1	234	40	80	16.8314
UGCCCGGGUCUGGAGGCCUGUAGUGGGCGAGGGACCUGCA	chr19:18548148-18548396(-)$1	248	139	179	15.7702
gucguuauuuucagcagguagagggaaaaugaucuggaag	chr15:90132041-90132303(+)$1	262	87	127	12.1577
CUGGGCGUCUGCGUGUUGCCGCGUGUUACACGCACGCACG	chr20:361825-362062(+)$1	237	72	112	13.4944
GGACCUGGGUGGGAGGAGCCCUCAGUUACCUUCACCGGGG	chr2:242691304-242691598(+)$1	294	136	176	15.3474
GGGUUGGGGGGGUUGCCGCGUCCGGCGGGGCCUGACUCUG	chr13:92001148-92001427(+)$1	279	128	168	15.0081
CUGACCCGCACCGCGGCCUGGCUCGGGGGCGCGGGGGGCG	chr1:46768347-46768602(-)$1	255	3	43	14.4170
UUGGUUACUAUGCAGUGGGAAUGUCCAGUGCUGAGUGUCG	chr16:89028422-89028666(-)$1	244	131	171	12.4103

#DB
.((((...(((..(((((......)))))..)))))))..	chr19:3694190-3694414(-)$1	1	5	45	12.4363
((((((((((((((((..((...))..)))))))...)))	chr22:50039284-50039538(-)$1	1	140	180	12.9634
((((((.(((((((.(.((.....))).))).))))...)	chr12:133272035-133272284(+)$1	1	130	170	14.5367
((((((((((.(((.(((((...))))).)))))))))))	chr20:60722702-60722949(+)$1	1	170	210	15.0345
(((..(((..(((...(((.....))).))).)))..)))	chr9:138831142-138831409(-)$1	1	97	137	16.1323
((((((((....((.((((.....)))).))...))))))	chr16:1510604-1510887(-)$1	1	211	251	15.5623
.(.(((((((((((((.((((..((((.(..(((((((((	chr9:139560092-139560350(+)$1	1	127	167	12.4677
((.(((((((....(((((......)))))....))))))	chr1:47689868-47690095(-)$1	1	48	88	14.6883
...(((((((.(((.(((......))).))).))))))).	chr17:7476808-7477074(+)$1	1	125	165	15.8909
(((((((((((..((((((.....))).)))))))))...	chr11:68228195-68228456(+)$1	1	168	208	14.7498
(((((.(..(((((((((......)))))))))..)))))	chr19:2336597-2336846(+)$1	1	144	184	13.7077
((((((((((((((..((((...)))).))).))))))))	chr16:88577284-88577529(+)$1	1	28	68	16.1099
(((....(((((((.((((.....)))).))).))))...	chr3:128208890-128209150(+)$1	1	5	45	14.7313
...((.((((..(((.(((.....))))))....)))).)	chr20:35483513-35483760(-)$1	1	17	57	14.8215
((.(((((((((....((((......))))...))).)))	chr12:133106946-133107200(+)$1	1	165	205	13.0648
((((.((...(((.(((((.....))))).))).)).)).	chr7:150787014-150787264(+)$1	1	26	66	12.7351
((((((.((((((((((.((....)).)))))))))).))	chr3:14989009-14989269(-)$1	1	154	194	13.7372
((.(((..(.((((.(((......))))))).)..)))))	chr3:128215960-128216186(+)$1	1	19	59	13.8033
.))).(((.((((((((((.....)))))))))).))).(	chr5:139029579-139029827(+)$1	1	58	98	13.2316
((.(.((((.(((((((.((....)).)))))))))).).	chr16:3767279-3767620(-)$1	1	181	221	12.3385
...(.((((..(((((((......)))))))...)))).)	chr19:18547928-18548199(-)$1	1	103	143	14.0373
((....(((((((((.(((....))).)))))))))...)	chr19:1412129-1412390(+)$1	1	20	60	14.4211
(((((..(((((((.((((.....)))).))))))).)).	chr22:20004133-20004419(-)$1	1	236	276	15.5455
((.(((((((((((..(((.....))))))))))))))..	chr22:50037566-50037836(-)$1	1	70	110	18.6840
((.((((...(.((((.((......)).).))).))))).	chr7:44836303-44836596(+)$1	1	61	101	12.0506
(..(..(((....(.((((.....)))).)...)))..).	chr5:134260118-134260369(+)$1	1	152	192	16.5561
(..(((((((.((((.(((...))))))))))))))..))	chr1:27893712-27893967(-)$1	1	122	162	12.9554
((.((..(((....(((((...))))))))..)).)))))	chr4:709072-709409(+)$1	1	64	104	12.9571
).((((((((((...((((.....))))...)))))))))	chr9:140411085-140411367(-)$1	1	133	173	17.3908
(((((((((((((...(((......))).))))).)))))	chr22:20067823-20068095(+)$1	1	160	200	14.6898
((.((.(((((((((.(((.....))).))))...)))))	chr17:76118855-76119099(-)$1	1	168	208	13.9671
((.((.(((.((((..(((.....)))..)))).))).))	chr19:2201463-2201795(+)$1	1	117	157	14.7714
(((((((((((...(((((.....)))))..)).))).))	chr8:1779908-1780219(+)$1	1	119	159	13.7861
(((.(.((..((..(((((......)))))..)).)).).	chr2:10538211-10538458(+)$1	1	98	138	12.1118
..(((((((.((..(((.(......).)))..))..))))	chr7:1492364-1492630(-)$1	1	136	176	12.3902
((.(((((((((.(((((((...))).)))))))))))))	chr22:50031804-50032042(-)$1	1	106	146	14.4278
((.(((.((((((...(((.....)))))))))))).)))	chr22:20111034-20111288(+)$1	1	138	178	14.7620
(((((((((.(((.((((((...)))..))).)))))).)	chr2:54197770-54198043(-)$1	1	153	193	13.9910
((((.((((((....(((......)))..)))))))))))	chr1:12644556-12644773(-)$1	1	49	89	12.6782
(((((((((.((..(((((.....)))))...)).)))))	chr22:26985832-26986087(-)$1	1	51	91	13.7618
((.((((((((.(((.(((.....))).)))))))).)))	chr22:49970313-49970548(-)$1	1	95	135	15.2453
((.((((.(((((..((((.....)))).))))))))).)	chr22:49927110-49927381(-)$1	1	112	152	13.5768
((((((((((((((..(((.....)))..)))))))))..	chr5:176738850-176739091(-)$1	1	160	200	15.5909
((((.....(((((((.(((...)))...)))))))....	chr19:46701111-46701358(-)$1	1	169	209	12.9152
(((((((((((((((.(((....))).))))).)))))))	chr16:87773808-87774044(-)$1	1	125	165	13.8935
((...((((((.....(((.....))).)))))))))...	chr19:14875048-14875341(-)$1	1	169	209	15.0449
(..((.(.(((((((.(((.....))).))))))).).))	chr9:94711307-94711555(-)$1	1	33	73	16.4003
((...(((((((((((((......)))).)).))))))).	chr17:73891781-73892041(-)$1	1	119	159	14.2130
.(((((.((((.((.(((......)))..)).)))).)))	chrM:14249-14477(-)$1	1	103	143	12.2107
((.(((((((((((((((((....))))).))))))))).	chr19:576875-577113(+)$1	1	31	71	13.1790
((.((((((((((((((((.....))))))).))))))))	chr4:140098113-140098347(-)$1	1	40	80	16.8314
))))(((((((....((((.....))))...)))))))((	chr19:18548148-18548396(-)$1	1	139	179	15.7702
.(.(((.(((((((...((.........))...)))))))	chr15:90132041-90132303(+)$1	1	87	127	12.1577
))((((((((((((((.((.....)).))))))).).)))	chr20:361825-362062(+)$1	1	72	112	13.4944
((.(((.(((((.((((((.....))).)))))))).)))	chr2:242691304-242691598(+)$1	1	136	176	15.3474
((((((((((((((.((((.....)))))))))..)))))	chr13:92001148-92001427(+)$1	1	128	168	15.0081
((..(((.(.(((((.(((......))).)))))))))..	chr1:46768347-46768602(-)$1	1	3	43	14.4170
.(.(.((((..(((.((((....)))).)))..)))).).	chr16:89028422-89028666(-)$1	1	131	171	12.4103

#PSSM
d : 0.15	e : 0.13	b : 0.13	c : 0.10	= : 0.08	f : 0.08	g : 0.06	[ : 0.06	" : 0.03	i : 0.03	# : 0.03	4 : 0.01	a : 0.01	' : 0.01	
d : 0.17	e : 0.15	b : 0.12	g : 0.10	= : 0.08	f : 0.06	c : 0.06	a : 0.05	! : 0.05	i : 0.03	# : 0.03	" : 0.01	: : 0.01	' : 0.01	
[ : 0.32	g : 0.12	e : 0.12	= : 0.08	f : 0.06	! : 0.06	# : 0.05	" : 0.05	d : 0.03	i : 0.03	b : 0.01	c : 0.01	
g : 0.17	= : 0.12	b : 0.12	c : 0.12	a : 0.08	d : 0.06	i : 0.06	f : 0.06	e : 0.05	! : 0.03	# : 0.03	" : 0.03	[ : 0.01	
g : 0.18	c : 0.12	= : 0.10	b : 0.10	e : 0.08	[ : 0.08	i : 0.06	d : 0.05	! : 0.03	f : 0.03	# : 0.03	" : 0.03	: : 0.01	a : 0.01	$ : 0.01	
g : 0.20	c : 0.15	= : 0.10	[ : 0.10	i : 0.08	f : 0.06	d : 0.06	e : 0.05	! : 0.05	# : 0.03	" : 0.01	b : 0.01	a : 0.01	$ : 0.01	
c : 0.13	g : 0.13	i : 0.12	[ : 0.10	= : 0.10	d : 0.08	f : 0.06	e : 0.06	! : 0.05	a : 0.03	b : 0.03	" : 0.01	# : 0.01	$ : 0.01	
g : 0.17	c : 0.13	i : 0.12	= : 0.12	d : 0.10	f : 0.08	e : 0.08	" : 0.05	[ : 0.05	! : 0.03	b : 0.01	$ : 0.01	
g : 0.15	c : 0.12	i : 0.12	= : 0.12	e : 0.12	d : 0.10	f : 0.06	! : 0.05	a : 0.05	" : 0.03	# : 0.01	[ : 0.01	$ : 0.01	
g : 0.18	= : 0.13	[ : 0.12	i : 0.10	e : 0.10	d : 0.06	! : 0.06	f : 0.06	c : 0.05	# : 0.03	" : 0.03	b : 0.01	
g : 0.15	e : 0.13	= : 0.10	i : 0.10	c : 0.08	d : 0.08	# : 0.06	f : 0.06	b : 0.06	[ : 0.05	! : 0.05	a : 0.01	
c : 0.17	g : 0.15	# : 0.10	i : 0.10	e : 0.10	= : 0.08	d : 0.06	! : 0.05	[ : 0.05	b : 0.05	" : 0.01	f : 0.01	$ : 0.01	
c : 0.20	g : 0.15	# : 0.10	! : 0.08	e : 0.08	= : 0.06	i : 0.06	d : 0.06	b : 0.05	" : 0.03	[ : 0.03	f : 0.01	$ : 0.01	
c : 0.18	g : 0.15	" : 0.08	# : 0.08	d : 0.08	e : 0.06	= : 0.06	i : 0.06	! : 0.06	b : 0.05	[ : 0.03	a : 0.01	$ : 0.01	
[ : 0.18	e : 0.15	g : 0.12	c : 0.12	" : 0.08	! : 0.08	d : 0.06	= : 0.05	i : 0.05	# : 0.05	$ : 0.01	
d : 0.18	e : 0.15	c : 0.13	[ : 0.13	g : 0.10	" : 0.06	! : 0.06	a : 0.05	= : 0.03	i : 0.01	# : 0.01	$ : 0.01	
c : 0.39	d : 0.22	e : 0.15	[ : 0.08	g : 0.05	= : 0.03	! : 0.01	i : 0.01	" : 0.01	
c : 0.43	d : 0.20	e : 0.15	b : 0.06	[ : 0.05	g : 0.03	! : 0.01	i : 0.01	= : 0.01	
c : 0.36	d : 0.18	o : 0.13	e : 0.13	b : 0.12	= : 0.01	a : 0.01	g : 0.01	
n : 0.46	o : 0.24	c : 0.06	b : 0.05	m : 0.05	e : 0.03	d : 0.03	l : 0.03	r : 0.01	
n : 0.46	o : 0.25	l : 0.13	m : 0.10	a : 0.01	r : 0.01	
n : 0.46	o : 0.25	l : 0.13	m : 0.10	! : 0.01	r : 0.01	
n : 0.46	o : 0.25	l : 0.10	m : 0.10	! : 0.01	c : 0.01	e : 0.01	r : 0.01	
n : 0.46	o : 0.25	c : 0.10	d : 0.05	m : 0.05	e : 0.03	b : 0.01	r : 0.01	
c : 0.37	d : 0.20	e : 0.12	o : 0.12	b : 0.08	g : 0.03	i : 0.01	= : 0.01	r : 0.01	
c : 0.39	d : 0.22	e : 0.15	b : 0.08	g : 0.03	2 : 0.01	i : 0.01	o : 0.01	= : 0.01	a : 0.01	r : 0.01	
c : 0.31	d : 0.24	e : 0.15	] : 0.12	2 : 0.03	g : 0.03	a : 0.01	i : 0.01	= : 0.01	b : 0.01	3 : 0.01	r : 0.01	
d : 0.22	] : 0.20	e : 0.15	g : 0.08	c : 0.08	2 : 0.08	= : 0.05	i : 0.03	[ : 0.01	f : 0.01	3 : 0.01	r : 0.01	
c : 0.20	e : 0.15	] : 0.15	g : 0.10	d : 0.08	2 : 0.06	= : 0.05	3 : 0.05	a : 0.03	i : 0.03	f : 0.03	b : 0.01	
c : 0.24	g : 0.15	e : 0.12	d : 0.08	b : 0.06	i : 0.05	] : 0.05	= : 0.05	3 : 0.05	f : 0.05	2 : 0.03	! : 0.01	a : 0.01	
c : 0.22	g : 0.15	3 : 0.10	2 : 0.08	e : 0.08	i : 0.06	d : 0.06	b : 0.05	= : 0.05	f : 0.05	4 : 0.03	! : 0.01	
] : 0.15	g : 0.13	e : 0.12	3 : 0.10	c : 0.08	= : 0.08	i : 0.08	f : 0.06	2 : 0.06	4 : 0.03	d : 0.03	b : 0.01	
g : 0.17	= : 0.12	3 : 0.10	i : 0.10	e : 0.10	c : 0.08	b : 0.08	f : 0.06	d : 0.05	4 : 0.03	] : 0.03	a : 0.01	2 : 0.01	
g : 0.18	= : 0.13	c : 0.10	i : 0.08	e : 0.08	d : 0.06	] : 0.06	b : 0.06	3 : 0.05	f : 0.05	2 : 0.05	4 : 0.03	
g : 0.17	c : 0.15	d : 0.13	= : 0.12	] : 0.10	i : 0.08	2 : 0.06	3 : 0.03	f : 0.03	a : 0.03	e : 0.03	b : 0.01	
c : 0.18	g : 0.17	d : 0.15	= : 0.13	i : 0.10	e : 0.06	2 : 0.03	f : 0.03	a : 0.03	b : 0.03	3 : 0.01	] : 0.01	
= : 0.13	g : 0.13	] : 0.13	c : 0.13	d : 0.12	i : 0.08	3 : 0.05	2 : 0.05	e : 0.05	f : 0.03	b : 0.01	4 : 0.01	a : 0.01	
g : 0.13	= : 0.12	] : 0.12	d : 0.10	i : 0.10	e : 0.10	c : 0.10	3 : 0.08	b : 0.03	2 : 0.03	f : 0.03	4 : 0.01	
g : 0.15	3 : 0.12	= : 0.10	e : 0.10	b : 0.10	i : 0.08	] : 0.06	a : 0.06	d : 0.05	f : 0.03	c : 0.03	: : 0.01	2 : 0.01	5 : 0.01	4 : 0.01	
g : 0.15	= : 0.10	e : 0.10	b : 0.10	] : 0.10	3 : 0.08	i : 0.06	2 : 0.06	d : 0.05	f : 0.03	c : 0.03	6 : 0.01	E : 0.01	a : 0.01	5 : 0.01	4 : 0.01	

#score	826.38723032305
#seq	58
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_CDS_m3_run1.txt

#BEAR
[a[hhhhhhhhrrrrrrrrrhhhhhhhh]a]	chr19:7705417-7705732(+)$1	315	132	163	10.1503
============qqqqqqqq===========	chr19:47774827-47775044(+)$1	217	142	173	11.9099
[bb[ccc[attttttttttta]cccbb]bb]	chr1:44445582-44445823(+)$1	241	35	66	11.1073
ddd[eeeeevvvvvvvvvvvvveeeee]ddd	chr19:50162950-50163194(-)$1	244	26	57	10.4033
[bb[dddd[a[aqqqqqqqqa]adddd]bb]	chr19:2199826-2200127(+)$1	301	210	241	10.6036
c[a[axxxxxxxxxxxxxxxa]a]ccc]bb]	chr1:101487177-101487581(-)$1	404	161	192	10.1705
"dddd[eeeeeooooooeeeeedddd22ddd	chr1:987290-987531(+)$1	241	145	176	7.4434
eccc[gggggggqqqqqqqqgggggggccc3	chr19:16986688-16986982(+)$1	294	250	281	10.6886
bb$$$$$ffffffooooooffffff333bb2	chr11:637261-637528(+)$1	267	193	224	9.2383
"gggggggcccqqqqqqqqccc333gggggg	chr22:20109980-20110244(+)$1	264	82	113	10.4636
fff!!ffffffssssssssssffffff4444	chr6:33231022-33231372(-)$1	350	237	268	11.7185
"bb[gggggggrrrrrrrrrggggggg]bb3	chr1:1154193-1154436(-)$1	243	201	232	14.4823
f####ffffffrrrrrrrrrffffff55555	chr11:47376992-47377220(-)$1	228	85	116	9.9137
============oooooo============:	chr20:62364323-62364719(+)$1	396	0	31	10.0635
:ggggggg[bbssssssssssbb]ggggggg	chr12:6692415-6692648(-)$1	233	172	203	9.8471
gg!!eeeee!!annnnna22eeeeegggggg	chr17:76117681-76117952(-)$1	271	16	47	6.9629
ccceeeeevvvvvvvvvvvvveeeee22ccc	chr16:2213901-2214173(+)$1	272	77	108	10.6724
[a[bbccc[bbrrrrrrrrrbb]ccc22bb]	chr22:20110056-20110319(+)$1	263	148	179	11.9367
bb!!ggggggguuuuuuuuuuuuggggggg2	chr4:78740027-78740329(-)$1	302	255	286	11.3593
##dddd[ddddssssssssssdddd]dddd3	chr19:2270345-2270565(+)$1	220	55	86	9.6300
ffffffffffffooooooffffff22fffff	chr7:1478502-1478766(-)$1	264	204	235	7.3918
""===========ppppppp===========	chr19:3148653-3148958(-)$1	305	117	148	10.1540
[eeeee[eeeeeqqqqqqqqeeeee]eeeee	chr7:1479528-1479814(-)$1	286	147	178	9.2810
[bb"""ffffffrrrrrrrrrffffffbb]a	chr17:79396525-79396799(+)$1	274	159	190	12.0343
$$$$gggggggpppppppggggggg333ddd	chr1:1155970-1156214(-)$1	244	80	111	8.4961
b"""ggggggg[aooooooaggggggg4444	chr22:24439200-24439492(+)$1	292	142	173	11.4163
B:ddddeeeeerrrrrrrrreeeee22dddd	chr14:91686685-91686950(+)$1	265	73	104	9.7813
=======eeeeeqqqqqqqqeeeee]=====	chr19:50163992-50164304(-)$1	312	97	128	11.3894
b]bbffffffcccooooooccca[ggggggg	chr19:11664437-11664688(-)$1	251	67	98	8.4476
[aa!!ffffffrrrrrrrrrffffff55555	chr19:42398110-42398397(+)$1	287	145	176	10.5012
!bb[a"""cccqqqqqqqqccc4444a]bb]	chr7:50444219-50444500(+)$1	281	11	42	10.7074

#otherMatches

#Seq PSSM
GAGGCCUAGGCAGCCAAUGAGCCUAGGUGUG	chr19:7705417-7705732(+)$1	315	132	163	10.1503
gugugugugugugugugugugcgcgcgcgcg	chr19:47774827-47775044(+)$1	217	142	173	11.9099
CGCCGGAGGGAGGGUGGGAAUGUCUGCACGU	chr1:44445582-44445823(+)$1	241	35	66	11.1073
UCCUCCAAGCCCUGACUCCUACCUUGGUGGA	chr19:50162950-50163194(-)$1	244	26	57	10.4033
GCUGGCUGUGGCAGGAAAGAGGCCGGUGGGG	chr19:2199826-2200127(+)$1	301	210	241	10.6036
AAAGAgugugugugugugugugugugugugu	chr1:101487177-101487581(-)$1	404	161	192	10.1705
ACUCCUCCAUCCUUCCUGGUGGGGAGCAGAG	chr1:987290-987531(+)$1	241	145	176	7.4434
CCGCUGGUGGGAACCUGUCCUCCCGCUGCGU	chr19:16986688-16986982(+)$1	294	250	281	10.6886
GGGAACUCGCUCGUGUGCGUGAGCGUGGCCA	chr11:637261-637528(+)$1	267	193	224	9.2383
GUGUGUUUGUUGAAUUUAAAACCAGAAAUAC	chr22:20109980-20110244(+)$1	264	82	113	10.4636
AUGCGGAAUUACUGUAACUCUUGAUUCACAA	chr6:33231022-33231372(-)$1	350	237	268	11.7185
CGGAGGAGGAGUUCCUGUCGUUCCUCCACCC	chr1:1154193-1154436(-)$1	243	201	232	14.4823
GCCCCGGGCCCCCUCCCACCGGGCCCUCCCC	chr11:47376992-47377220(-)$1	228	85	116	9.9137
gugcauguguaucuguaugugcguguguaua	chr20:62364323-62364719(+)$1	396	0	31	10.0635
AUUGCUGCGGCACCAUUAUGAGCAGCAGCAA	chr12:6692415-6692648(-)$1	233	172	203	9.8471
AGGUGGGGCAUGGGGAACUGGCCCUCUGUCC	chr17:76117681-76117952(-)$1	271	16	47	6.9629
CCCACCCCAGACGUCACCACAGGGGUAAGGG	chr16:2213901-2214173(+)$1	272	77	108	10.6724
GGGCUCGGGACGAGGAGUGAGUGCUGCAGGG	chr22:20110056-20110319(+)$1	263	148	179	11.9367
CGCGCGGCAGCGGGGCUGGGAGAGCUGCUGG	chr4:78740027-78740329(-)$1	302	255	286	11.3593
ACCUCGUGGGCCCCGUUUUUCGCCCCUGAGC	chr19:2270345-2270565(+)$1	220	55	86	9.6300
GGCUUCGGCCGGAGCCCCCUGGCCAGGAAGC	chr7:1478502-1478766(-)$1	264	204	235	7.3918
CCGGGGUCUGGGGAACCCUGCCCUGGGCCCC	chr19:3148653-3148958(-)$1	305	117	148	10.1540
CCCCAGGAAGGUCUCAGGCAGCUUUGCUGGG	chr7:1479528-1479814(-)$1	286	147	178	9.2810
CGGCAAGCUUCCAACUCCGAGGGGAGCCCAC	chr17:79396525-79396799(+)$1	274	159	190	12.0343
UUUAUUUGGGUCUUUUCUGCCCAGGACAUGG	chr1:1155970-1156214(-)$1	244	80	111	8.4961
CCCUCUGCUUGUGUCGCUUCCAGGCAGUGAU	chr22:24439200-24439492(+)$1	292	142	173	11.4163
CAUGACAAGGUCCUUUCUUUACUUUCAGUCA	chr14:91686685-91686950(+)$1	265	73	104	9.7813
CCUGGUCGAGGCAGCAGAGGGCCUUAGGUCA	chr19:50163992-50164304(-)$1	312	97	128	11.3894
GUCAGAACCCGUGGAUGUGUACAGUGAUUGG	chr19:11664437-11664688(-)$1	251	67	98	8.4476
GCCCUCACUGUCCCUUCCCUACAGUGCUGCC	chr19:42398110-42398397(+)$1	287	145	176	10.5012
CCAGUAAUGUUAAAGUAGAGACUCAGAGUGA	chr7:50444219-50444500(+)$1	281	11	42	10.7074

#DB
.(.((((((((.........)))))))).).	chr19:7705417-7705732(+)$1	1	132	163	10.1503
((((((((((((........)))))))))))	chr19:47774827-47775044(+)$1	1	142	173	11.9099
.((.(((.(...........).))))).)).	chr1:44445582-44445823(+)$1	1	35	66	11.1073
(((.(((((.............))))).)))	chr19:50162950-50163194(-)$1	1	26	57	10.4033
.((.((((.(.(........).))))).)).	chr19:2199826-2200127(+)$1	1	210	241	10.6036
(.(.(...............).).))).)).	chr1:101487177-101487581(-)$1	1	161	192	10.1705
.((((.(((((......)))))))))..)))	chr1:987290-987531(+)$1	1	145	176	7.4434
((((.(((((((........)))))))))).	chr19:16986688-16986982(+)$1	1	250	281	10.6886
((.....((((((......))))))...)).	chr11:637261-637528(+)$1	1	193	224	9.2383
.((((((((((........)))...))))))	chr22:20109980-20110244(+)$1	1	82	113	10.4636
(((..((((((..........))))))....	chr6:33231022-33231372(-)$1	1	237	268	11.7185
.((.(((((((.........))))))).)).	chr1:1154193-1154436(-)$1	1	201	232	14.4823
(....((((((.........)))))).....	chr11:47376992-47377220(-)$1	1	85	116	9.9137
((((((((((((......)))))))))))).	chr20:62364323-62364719(+)$1	1	0	31	10.0635
.(((((((.((..........)).)))))))	chr12:6692415-6692648(-)$1	1	172	203	9.8471
((..(((((..(.....)..)))))))))))	chr17:76117681-76117952(-)$1	1	16	47	6.9629
((((((((.............)))))..)))	chr16:2213901-2214173(+)$1	1	77	108	10.6724
.(.(((((.((.........)).)))..)).	chr22:20110056-20110319(+)$1	1	148	179	11.9367
((..(((((((............))))))).	chr4:78740027-78740329(-)$1	1	255	286	11.3593
..((((.((((..........)))).)))).	chr19:2270345-2270565(+)$1	1	55	86	9.6300
((((((((((((......))))))..)))))	chr7:1478502-1478766(-)$1	1	204	235	7.3918
..(((((((((((.......)))))))))))	chr19:3148653-3148958(-)$1	1	117	148	10.1540
.(((((.(((((........))))).)))))	chr7:1479528-1479814(-)$1	1	147	178	9.2810
.((...((((((.........)))))))).)	chr17:79396525-79396799(+)$1	1	159	190	12.0343
....(((((((.......)))))))...)))	chr1:1155970-1156214(-)$1	1	80	111	8.4961
(...(((((((.(......))))))))....	chr22:24439200-24439492(+)$1	1	142	173	11.4163
(.(((((((((.........)))))..))))	chr14:91686685-91686950(+)$1	1	73	104	9.7813
((((((((((((........))))).)))))	chr19:50163992-50164304(-)$1	1	97	128	11.3894
).))))))))(((......)))(.(((((((	chr19:11664437-11664688(-)$1	1	67	98	8.4476
.((..((((((.........)))))).....	chr19:42398110-42398397(+)$1	1	145	176	10.5012
.((.(...(((........)))....).)).	chr7:50444219-50444500(+)$1	1	11	42	10.7074

#PSSM
[ : 0.22	" : 0.12	b : 0.12	= : 0.09	f : 0.09	c : 0.06	d : 0.03	e : 0.03	: : 0.03	g : 0.03	# : 0.03	$ : 0.03	B : 0.03	! : 0.03	
b : 0.22	a : 0.09	= : 0.09	g : 0.09	d : 0.06	c : 0.06	f : 0.06	# : 0.06	" : 0.06	[ : 0.03	e : 0.03	$ : 0.03	: : 0.03	] : 0.03	
b : 0.19	= : 0.12	d : 0.12	[ : 0.06	a : 0.06	c : 0.06	$ : 0.06	g : 0.06	f : 0.06	! : 0.06	# : 0.03	e : 0.03	" : 0.03	
[ : 0.19	= : 0.12	! : 0.12	d : 0.09	$ : 0.06	g : 0.06	e : 0.06	b : 0.06	" : 0.06	h : 0.03	c : 0.03	# : 0.03	f : 0.03	
g : 0.19	= : 0.12	e : 0.12	d : 0.12	a : 0.06	! : 0.06	f : 0.06	h : 0.03	c : 0.03	[ : 0.03	$ : 0.03	# : 0.03	b : 0.03	" : 0.03	
g : 0.22	f : 0.16	= : 0.12	e : 0.12	d : 0.09	c : 0.06	" : 0.06	h : 0.03	x : 0.03	[ : 0.03	$ : 0.03	
g : 0.22	f : 0.19	e : 0.16	= : 0.12	c : 0.06	[ : 0.06	h : 0.03	d : 0.03	x : 0.03	$ : 0.03	" : 0.03	
e : 0.22	g : 0.22	f : 0.22	= : 0.09	d : 0.06	h : 0.03	[ : 0.03	x : 0.03	c : 0.03	" : 0.03	
f : 0.22	e : 0.19	g : 0.16	= : 0.09	[ : 0.09	c : 0.06	h : 0.03	a : 0.03	x : 0.03	v : 0.03	d : 0.03	
f : 0.22	g : 0.16	e : 0.12	= : 0.09	v : 0.06	c : 0.06	b : 0.06	h : 0.03	t : 0.03	a : 0.03	x : 0.03	! : 0.03	d : 0.03	
f : 0.19	g : 0.16	e : 0.12	= : 0.09	c : 0.09	v : 0.06	b : 0.06	h : 0.03	t : 0.03	[ : 0.03	x : 0.03	! : 0.03	d : 0.03	
r : 0.19	= : 0.09	f : 0.09	s : 0.09	v : 0.06	a : 0.06	q : 0.06	e : 0.06	t : 0.03	x : 0.03	o : 0.03	g : 0.03	u : 0.03	p : 0.03	[ : 0.03	c : 0.03	
r : 0.22	q : 0.22	o : 0.09	s : 0.09	v : 0.06	t : 0.03	x : 0.03	f : 0.03	n : 0.03	u : 0.03	= : 0.03	p : 0.03	a : 0.03	c : 0.03	
r : 0.22	q : 0.22	o : 0.19	s : 0.09	v : 0.06	p : 0.06	t : 0.03	x : 0.03	n : 0.03	u : 0.03	
r : 0.22	q : 0.22	o : 0.19	s : 0.09	v : 0.06	p : 0.06	t : 0.03	x : 0.03	n : 0.03	u : 0.03	
r : 0.22	q : 0.22	o : 0.19	s : 0.09	v : 0.06	p : 0.06	t : 0.03	x : 0.03	n : 0.03	u : 0.03	
r : 0.22	q : 0.22	o : 0.19	s : 0.09	v : 0.06	p : 0.06	t : 0.03	x : 0.03	n : 0.03	u : 0.03	
r : 0.22	q : 0.22	o : 0.16	s : 0.09	v : 0.06	p : 0.06	t : 0.03	x : 0.03	e : 0.03	a : 0.03	u : 0.03	
r : 0.22	q : 0.22	o : 0.09	s : 0.09	v : 0.06	t : 0.03	x : 0.03	e : 0.03	= : 0.03	2 : 0.03	u : 0.03	f : 0.03	p : 0.03	g : 0.03	
r : 0.22	q : 0.16	c : 0.09	s : 0.09	v : 0.06	f : 0.06	t : 0.03	x : 0.03	e : 0.03	= : 0.03	2 : 0.03	u : 0.03	p : 0.03	g : 0.03	a : 0.03	
e : 0.16	g : 0.12	f : 0.12	= : 0.09	a : 0.09	c : 0.09	s : 0.09	v : 0.06	h : 0.03	b : 0.03	u : 0.03	r : 0.03	
e : 0.19	f : 0.19	g : 0.12	= : 0.09	] : 0.09	c : 0.09	b : 0.06	h : 0.03	v : 0.03	u : 0.03	d : 0.03	
e : 0.19	f : 0.19	g : 0.12	= : 0.09	a : 0.09	d : 0.06	h : 0.03	c : 0.03	3 : 0.03	b : 0.03	] : 0.03	u : 0.03	4 : 0.03	
e : 0.19	f : 0.19	g : 0.16	= : 0.09	d : 0.09	c : 0.06	] : 0.06	h : 0.03	3 : 0.03	[ : 0.03	4 : 0.03	
g : 0.22	e : 0.19	f : 0.16	= : 0.09	c : 0.09	d : 0.09	h : 0.03	3 : 0.03	2 : 0.03	4 : 0.03	
g : 0.25	f : 0.12	= : 0.09	] : 0.09	e : 0.06	d : 0.06	c : 0.06	3 : 0.06	2 : 0.06	h : 0.03	b : 0.03	4 : 0.03	
g : 0.25	= : 0.12	2 : 0.12	f : 0.09	e : 0.06	d : 0.06	3 : 0.06	5 : 0.06	h : 0.03	b : 0.03	c : 0.03	a : 0.03	
] : 0.19	g : 0.16	= : 0.12	2 : 0.09	3 : 0.06	4 : 0.06	5 : 0.06	d : 0.06	h : 0.03	c : 0.03	f : 0.03	e : 0.03	b : 0.03	
b : 0.25	d : 0.16	g : 0.16	= : 0.12	c : 0.06	4 : 0.06	5 : 0.06	] : 0.03	f : 0.03	e : 0.03	
b : 0.22	d : 0.16	g : 0.16	= : 0.12	c : 0.06	4 : 0.06	5 : 0.06	a : 0.03	f : 0.03	e : 0.03	] : 0.03	
] : 0.19	d : 0.12	g : 0.12	= : 0.09	3 : 0.09	2 : 0.06	4 : 0.06	5 : 0.06	: : 0.03	c : 0.03	f : 0.03	e : 0.03	a : 0.03	

#score	318.36692750115145
#seq	31
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_UTR_m3_run2.txt

#BEAR
eeeeepppppppeeeee	chrX:123512184-123512511(-)$1	327	238	255	14.6944
:ddddpppppppdddd:	chr2:85547883-85548195(-)$1	312	106	123	12.5596
:ddddpppppppdddd:	chr4:37863286-37863631(+)$1	345	28	45	12.5596
[ddddpppppppdddd]	chr2:153508896-153509149(-)$1	253	29	46	14.5287
:ddddpppppppdddd:	chr8:124826361-124826628(+)$1	267	52	69	12.5596
eeeeepppppppeeeee	chr8:30643164-30643442(-)$1	278	16	33	14.6944
eeeeepppppppeeeee	chr21:40717940-40718195(-)$1	255	52	69	14.6944
bddddpppppppdddd>	chr8:144989272-144989557(-)$1	285	95	112	13.8485
gggggpppppppggggg	chr15:66783687-66783961(+)$1	274	79	96	13.1016
eeeeepppppppeeeee	chr6:107100949-107101256(+)$1	307	18	35	14.6944
!!cccpppppppccc22	chr21:40717849-40718130(-)$1	281	15	32	13.3221
eeeeepppppppeeeee	chr1:47143916-47144204(-)$1	288	24	41	14.6944
!!cccpppppppcccgg	chr7:64293548-64293841(+)$1	293	257	274	13.6156
[ddddpppppppdddd]	chr3:183889126-183889402(+)$1	276	12	29	14.5287
eeeeepppppppeeeee	chr22:26931871-26932191(-)$1	320	271	288	14.6944
:ddddpppppppdddd:	chr7:77569619-77569927(+)$1	308	223	240	12.5596
gggggpppppppggggg	chr2:152659020-152659287(-)$1	267	67	84	13.1016
eeeeepppppppeeeee	chr11:3011918-3012192(-)$1	274	239	256	14.6944
eeeeepppppppeeeee	chr2:242291553-242291871(+)$1	318	54	71	14.6944
fffffpppppppfffff	chr18:2582383-2582715(+)$1	332	235	252	12.7375
!!cccpppppppccc22	chr21:40717930-40718140(-)$1	210	25	42	13.3221
eeeeepppppppeeeee	chr7:86792276-86792592(+)$1	316	13	30	14.6944
[ddddpppppppdddd]	chr12:76747159-76747509(-)$1	350	152	169	14.5287
fffffpppppppfffff	chr6:163994664-163994985(+)$1	321	201	218	12.7375
fffffpppppppfffff	chr14:23033730-23034006(-)$1	276	257	274	12.7375
eeeeepppppppeeeee	chr5:148884498-148884857(-)$1	359	251	268	14.6944
fffffpppppppfffff	chr14:31086835-31087174(+)$1	339	8	25	12.7375
eeeeepppppppeeeee	chr2:152659102-152659399(-)$1	297	140	157	14.6944
[ddddpppppppdddd]	chr9:86584384-86584720(-)$1	336	248	265	14.5287
fffffpppppppfffff	chr4:140339699-140340014(+)$1	315	189	206	12.7375
eeeeepppppppeeeee	chr9:36339364-36339677(-)$1	313	188	205	14.6944
eeeeepppppppeeeee	chr11:22842216-22842488(-)$1	272	73	90	14.6944
eeeeepppppppeeeee	chr3:183888905-183889247(+)$1	342	318	335	14.6944
fffffpppppppfffff	chr6:127610057-127610343(-)$1	286	17	34	12.7375
fffffpppppppfffff	chr11:96075322-96075636(-)$1	314	209	226	12.7375
eeeeepppppppeeeee	chr20:57475219-57475520(+)$1	301	97	114	14.6944
:ddddpppppppddddd	chr11:17110920-17111192(-)$1	272	38	55	13.2487
#ddddpppppppdddd3	chr8:124826506-124826782(+)$1	276	100	117	14.3752
[ddddpppppppdddd]	chr6:108365477-108365790(-)$1	313	28	45	14.5287
$ddddpppppppdddd5	chr1:248040318-248040640(+)$1	322	178	195	13.4053
eeeeerrrrrrrrreee	chr6:157739430-157739739(-)$1	309	261	278	10.4197
eeeeepppppppeeeee	chr5:89812161-89812487(-)$1	326	147	164	14.6944
##cccpppppppccc66	chr16:28978061-28978355(+)$1	294	50	67	12.3704
iiiiipppppppiiiii	chrX:103436900-103437200(+)$1	300	172	189	12.9069
d[cccpppppppcccdd	chr14:69846889-69847139(-)$1	250	169	186	13.3981
fffffpppppppfffff	chr1:117645299-117645530(+)$1	231	184	201	12.7375
d[cccpppppppccc]d	chr10:102124381-102124673(+)$1	292	189	206	13.2639
[ddddpppppppdddd]	chr1:16266718-16267022(+)$1	304	39	56	14.5287
eeeeerrrrrrrrreee	chr2:55254514-55254782(-)$1	268	212	229	10.4197
d[cccpppppppcccdd	chr14:69846820-69847089(-)$1	269	119	136	13.3981
eeeeerrrrrrrrreee	chr9:95477225-95477517(-)$1	292	160	177	10.4197
:ddddpppppppddddb	chr7:116594838-116595153(+)$1	315	172	189	13.0481
eddddpppppppdddd2	chr6:88304054-88304390(+)$1	336	19	36	14.2778
eeeeerrrrrrrrreee	chr1:85732539-85732816(-)$1	277	155	172	10.4197
"ddddpppppppdddd2	chr10:60158420-60158732(+)$1	312	93	110	14.2168
bddddpppppppdddd]	chr20:57475320-57475575(+)$1	255	189	206	14.1516
eeeeepppppppeeeee	chr3:14528410-14528728(+)$1	318	4	21	14.6944
cccccpppppppccc]c	chr7:140424882-140425179(-)$1	297	137	154	13.2557
eeeeepppppppeeeee	chr22:19956367-19956638(+)$1	271	224	241	14.6944
""cccpppppppccc44	chr12:53869039-53869268(+)$1	229	125	142	13.4183
hddddpppppppdddd:	chr20:17588112-17588403(+)$1	291	265	282	13.1900
=[cccpppppppccc]=	chr21:30718137-30718487(+)$1	350	89	106	13.5315
i[cccpppppppccc]i	chr18:673907-674219(-)$1	312	54	71	13.4794
cddddpppppppdddd]	chr6:30037384-30037715(+)$1	331	6	23	14.3418

#otherMatches

#Seq PSSM
AGAACCUCUGAUGUUCU	chrX:123512184-123512511(-)$1	327	238	255	14.6944
UUCAUUCUCUUCAUGAC	chr2:85547883-85548195(-)$1	312	106	123	12.5596
AUGAUUCAAAACAUCAC	chr4:37863286-37863631(+)$1	345	28	45	12.5596
UUGAAAUAUGUAUUCAU	chr2:153508896-153509149(-)$1	253	29	46	14.5287
CCAUGUGUAUGUUAUGU	chr8:124826361-124826628(+)$1	267	52	69	12.5596
AGUUAUAGUGUUUAACU	chr8:30643164-30643442(-)$1	278	16	33	14.6944
UGAGCUCUACUUGCUUG	chr21:40717940-40718195(-)$1	255	52	69	14.6944
UGAGCUUUGCAUGUUCC	chr8:144989272-144989557(-)$1	285	95	112	13.8485
AUAGUGCCUAAAAUUGU	chr15:66783687-66783961(+)$1	274	79	96	13.1016
UAACAUCUUUACUGUUA	chr6:107100949-107101256(+)$1	307	18	35	14.6944
CUUUAAUUCAAGUAAUU	chr21:40717849-40718130(-)$1	281	15	32	13.3221
GAUGGAAGAUACUCAUU	chr1:47143916-47144204(-)$1	288	24	41	14.6944
AAGCCUUUAAAUGGUUG	chr7:64293548-64293841(+)$1	293	257	274	13.6156
UGCCUAGAUCAGAGGCC	chr3:183889126-183889402(+)$1	276	12	29	14.5287
cucaagucuuuguugag	chr22:26931871-26932191(-)$1	320	271	288	14.6944
AGCGAUUACUUUUUGCA	chr7:77569619-77569927(+)$1	308	223	240	12.5596
GCAUUAGUGUUCAGUGC	chr2:152659020-152659287(-)$1	267	67	84	13.1016
gguuagguauaaugacu	chr11:3011918-3012192(-)$1	274	239	256	14.6944
CUAACCACUAAUGUUAG	chr2:242291553-242291871(+)$1	318	54	71	14.6944
UAGAAGAUAAUGUUUUG	chr18:2582383-2582715(+)$1	332	235	252	12.7375
CUUUAAUUCAAGUAAUU	chr21:40717930-40718140(-)$1	210	25	42	13.3221
UUUGUUUUUUCCACAGA	chr7:86792276-86792592(+)$1	316	13	30	14.6944
UUGACUUUGAAUGUUAU	chr12:76747159-76747509(-)$1	350	152	169	14.5287
GUUUAAUUAAAAUAAAC	chr6:163994664-163994985(+)$1	321	201	218	12.7375
UCAGUCCUCUGUGCUGA	chr14:23033730-23034006(-)$1	276	257	274	12.7375
UUUGACUUUAUUUCAGA	chr5:148884498-148884857(-)$1	359	251	268	14.6944
gaaugaaaaacccauuc	chr14:31086835-31087174(+)$1	339	8	25	12.7375
AUAAUAUCCUUCGUUAU	chr2:152659102-152659399(-)$1	297	140	157	14.6944
UUCUAAUUGUAAUGGAC	chr9:86584384-86584720(-)$1	336	248	265	14.5287
auugcuuuccuugcaau	chr4:140339699-140340014(+)$1	315	189	206	12.7375
UGGUUUUUGUGUGAUCA	chr9:36339364-36339677(-)$1	313	188	205	14.6944
AUAUGUAACUAUCAUAU	chr11:22842216-22842488(-)$1	272	73	90	14.6944
CAUGCCUGCCCUGCGUG	chr3:183888905-183889247(+)$1	342	318	335	14.6944
ACUACUGUUGAUGUAGU	chr6:127610057-127610343(-)$1	286	17	34	12.7375
GAUCUAACCCCCAGAUC	chr11:96075322-96075636(-)$1	314	209	226	12.7375
UAGUGAGCAACCUACUG	chr20:57475219-57475520(+)$1	301	97	114	14.6944
AAAGUUAAAUAUACUUG	chr11:17110920-17111192(-)$1	272	38	55	13.2487
UUUAAUCUCAUUUUAAU	chr8:124826506-124826782(+)$1	276	100	117	14.3752
AUGUGUAUUUGUCACAA	chr6:108365477-108365790(-)$1	313	28	45	14.5287
UUCCGUUUUCUUUGGAU	chr1:248040318-248040640(+)$1	322	178	195	13.4053
guccaaaaccagccugg	chr6:157739430-157739739(-)$1	309	261	278	10.4197
CUUGUAUAACUAACAAG	chr5:89812161-89812487(-)$1	326	147	164	14.6944
ACCUUUAUAUAUGAGAU	chr16:28978061-28978355(+)$1	294	50	67	12.3704
UUCUCAUCUGUAGAGAA	chrX:103436900-103437200(+)$1	300	172	189	12.9069
UCAUAUCUACUUUAUAA	chr14:69846889-69847139(-)$1	250	169	186	13.3981
uagcagaaauaaugcua	chr1:117645299-117645530(+)$1	231	184	201	12.7375
GAAGUGAAUCUGAUUGC	chr10:102124381-102124673(+)$1	292	189	206	13.2639
ACGGGUCCUGCUCCCGC	chr1:16266718-16267022(+)$1	304	39	56	14.5287
AGGAUUUCCCAUCUGUC	chr2:55254514-55254782(-)$1	268	212	229	10.4197
UCAUAUCUACUUUAUAA	chr14:69846820-69847089(-)$1	269	119	136	13.3981
GGUCAAUCUUAACGUGA	chr9:95477225-95477517(-)$1	292	160	177	10.4197
UUACAUUUGUUUUGUAG	chr7:116594838-116595153(+)$1	315	172	189	13.0481
UGCUUUGUUUUUAAGCC	chr6:88304054-88304390(+)$1	336	19	36	14.2778
UUUUCAUUCCUAAAGAA	chr1:85732539-85732816(-)$1	277	155	172	10.4197
CAUUAUUUCUCUUAAUU	chr10:60158420-60158732(+)$1	312	93	110	14.2168
UCUUUUCCCACCAAAGC	chr20:57475320-57475575(+)$1	255	189	206	14.1516
AACGAUUCUAUCUUGUU	chr3:14528410-14528728(+)$1	318	4	21	14.6944
CAUUGUUUCUUCCAACU	chr7:140424882-140425179(-)$1	297	137	154	13.2557
UGCCCUUGACUUGGGCA	chr22:19956367-19956638(+)$1	271	224	241	14.6944
UAGGCCAUUUCAGCUGA	chr12:53869039-53869268(+)$1	229	125	142	13.4183
ACAGGAAGUAGCCCUGC	chr20:17588112-17588403(+)$1	291	265	282	13.1900
AGCAGAAAAACAUUGAU	chr21:30718137-30718487(+)$1	350	89	106	13.5315
GCUAAGUAAUUAUUACU	chr18:673907-674219(-)$1	312	54	71	13.4794
CACUCUCAACAUGAGUA	chr6:30037384-30037715(+)$1	331	6	23	14.3418

#DB
(((((.......)))))	chrX:123512184-123512511(-)$1	1	238	255	14.6944
.((((.......)))).	chr2:85547883-85548195(-)$1	1	106	123	12.5596
.((((.......)))).	chr4:37863286-37863631(+)$1	1	28	45	12.5596
.((((.......)))).	chr2:153508896-153509149(-)$1	1	29	46	14.5287
.((((.......)))).	chr8:124826361-124826628(+)$1	1	52	69	12.5596
(((((.......)))))	chr8:30643164-30643442(-)$1	1	16	33	14.6944
(((((.......)))))	chr21:40717940-40718195(-)$1	1	52	69	14.6944
(((((.......)))).	chr8:144989272-144989557(-)$1	1	95	112	13.8485
(((((.......)))))	chr15:66783687-66783961(+)$1	1	79	96	13.1016
(((((.......)))))	chr6:107100949-107101256(+)$1	1	18	35	14.6944
..(((.......)))..	chr21:40717849-40718130(-)$1	1	15	32	13.3221
(((((.......)))))	chr1:47143916-47144204(-)$1	1	24	41	14.6944
..(((.......)))))	chr7:64293548-64293841(+)$1	1	257	274	13.6156
.((((.......)))).	chr3:183889126-183889402(+)$1	1	12	29	14.5287
(((((.......)))))	chr22:26931871-26932191(-)$1	1	271	288	14.6944
.((((.......)))).	chr7:77569619-77569927(+)$1	1	223	240	12.5596
(((((.......)))))	chr2:152659020-152659287(-)$1	1	67	84	13.1016
(((((.......)))))	chr11:3011918-3012192(-)$1	1	239	256	14.6944
(((((.......)))))	chr2:242291553-242291871(+)$1	1	54	71	14.6944
(((((.......)))))	chr18:2582383-2582715(+)$1	1	235	252	12.7375
..(((.......)))..	chr21:40717930-40718140(-)$1	1	25	42	13.3221
(((((.......)))))	chr7:86792276-86792592(+)$1	1	13	30	14.6944
.((((.......)))).	chr12:76747159-76747509(-)$1	1	152	169	14.5287
(((((.......)))))	chr6:163994664-163994985(+)$1	1	201	218	12.7375
(((((.......)))))	chr14:23033730-23034006(-)$1	1	257	274	12.7375
(((((.......)))))	chr5:148884498-148884857(-)$1	1	251	268	14.6944
(((((.......)))))	chr14:31086835-31087174(+)$1	1	8	25	12.7375
(((((.......)))))	chr2:152659102-152659399(-)$1	1	140	157	14.6944
.((((.......)))).	chr9:86584384-86584720(-)$1	1	248	265	14.5287
(((((.......)))))	chr4:140339699-140340014(+)$1	1	189	206	12.7375
(((((.......)))))	chr9:36339364-36339677(-)$1	1	188	205	14.6944
(((((.......)))))	chr11:22842216-22842488(-)$1	1	73	90	14.6944
(((((.......)))))	chr3:183888905-183889247(+)$1	1	318	335	14.6944
(((((.......)))))	chr6:127610057-127610343(-)$1	1	17	34	12.7375
(((((.......)))))	chr11:96075322-96075636(-)$1	1	209	226	12.7375
(((((.......)))))	chr20:57475219-57475520(+)$1	1	97	114	14.6944
.((((.......))))(	chr11:17110920-17111192(-)$1	1	38	55	13.2487
.((((.......)))).	chr8:124826506-124826782(+)$1	1	100	117	14.3752
.((((.......)))).	chr6:108365477-108365790(-)$1	1	28	45	14.5287
.((((.......)))).	chr1:248040318-248040640(+)$1	1	178	195	13.4053
(((((.........)))	chr6:157739430-157739739(-)$1	1	261	278	10.4197
(((((.......)))))	chr5:89812161-89812487(-)$1	1	147	164	14.6944
..(((.......)))..	chr16:28978061-28978355(+)$1	1	50	67	12.3704
(((((.......)))))	chrX:103436900-103437200(+)$1	1	172	189	12.9069
(.(((.......)))))	chr14:69846889-69847139(-)$1	1	169	186	13.3981
(((((.......)))))	chr1:117645299-117645530(+)$1	1	184	201	12.7375
(.(((.......))).)	chr10:102124381-102124673(+)$1	1	189	206	13.2639
.((((.......)))).	chr1:16266718-16267022(+)$1	1	39	56	14.5287
(((((.........)))	chr2:55254514-55254782(-)$1	1	212	229	10.4197
(.(((.......)))))	chr14:69846820-69847089(-)$1	1	119	136	13.3981
(((((.........)))	chr9:95477225-95477517(-)$1	1	160	177	10.4197
.((((.......))))(	chr7:116594838-116595153(+)$1	1	172	189	13.0481
(((((.......)))).	chr6:88304054-88304390(+)$1	1	19	36	14.2778
(((((.........)))	chr1:85732539-85732816(-)$1	1	155	172	10.4197
.((((.......)))).	chr10:60158420-60158732(+)$1	1	93	110	14.2168
(((((.......)))).	chr20:57475320-57475575(+)$1	1	189	206	14.1516
(((((.......)))))	chr3:14528410-14528728(+)$1	1	4	21	14.6944
(((((.......))).)	chr7:140424882-140425179(-)$1	1	137	154	13.2557
(((((.......)))))	chr22:19956367-19956638(+)$1	1	224	241	14.6944
..(((.......)))..	chr12:53869039-53869268(+)$1	1	125	142	13.4183
)((((.......)))).	chr20:17588112-17588403(+)$1	1	265	282	13.1900
(.(((.......))).)	chr21:30718137-30718487(+)$1	1	89	106	13.5315
(.(((.......))).)	chr18:673907-674219(-)$1	1	54	71	13.4794
(((((.......)))).	chr6:30037384-30037715(+)$1	1	6	23	14.3418

#PSSM
e : 0.35	f : 0.12	: : 0.09	[ : 0.09	! : 0.04	d : 0.04	b : 0.03	g : 0.03	# : 0.03	i : 0.03	" : 0.03	c : 0.03	$ : 0.01	h : 0.01	= : 0.01	
e : 0.34	d : 0.31	f : 0.12	[ : 0.07	! : 0.04	g : 0.03	# : 0.01	i : 0.01	c : 0.01	" : 0.01	
e : 0.34	d : 0.31	c : 0.17	f : 0.12	g : 0.03	i : 0.01	
e : 0.34	d : 0.31	c : 0.17	f : 0.12	g : 0.03	i : 0.01	
e : 0.34	d : 0.31	c : 0.17	f : 0.12	g : 0.03	i : 0.01	
p : 0.93	r : 0.06	
p : 0.93	r : 0.06	
p : 0.93	r : 0.06	
p : 0.93	r : 0.06	
p : 0.93	r : 0.06	
p : 0.93	r : 0.06	
p : 0.93	r : 0.06	
d : 0.31	e : 0.28	c : 0.17	f : 0.12	r : 0.06	g : 0.03	i : 0.01	
d : 0.31	e : 0.28	c : 0.17	f : 0.12	r : 0.06	g : 0.03	i : 0.01	
e : 0.34	d : 0.31	c : 0.17	f : 0.12	g : 0.03	i : 0.01	
e : 0.34	d : 0.34	f : 0.12	] : 0.06	g : 0.04	2 : 0.03	6 : 0.01	i : 0.01	4 : 0.01	
e : 0.34	] : 0.12	f : 0.12	: : 0.07	2 : 0.06	d : 0.06	g : 0.04	i : 0.03	> : 0.01	3 : 0.01	5 : 0.01	6 : 0.01	b : 0.01	c : 0.01	4 : 0.01	= : 0.01	

#score	869.0799652594683
#seq	64
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_CDS_m3_run1.txt

#BEAR
iiiiiiiiillliiiiii	chr11:62482646-62482883(-)$1	237	155	173	6.9880
ggg[bboooooobbgggg	chr2:54197716-54197970(-)$1	254	159	177	10.5682
ggggggoooooogggggg	chr19:42752572-42752836(-)$1	264	146	164	11.3192
ggggggoooooogggggg	chr1:43850074-43850323(-)$1	249	24	42	11.3192
ggggggoooooogggggg	chr19:49964946-49965219(+)$1	273	128	146	11.3192
cc!!bboooooobb]ccc	chr11:64894400-64894674(+)$1	274	65	83	10.1232
fffffaooooooa]ffff	chr19:7705434-7705718(+)$1	284	251	269	10.8077
d[acccooooooccc]a]	chr11:62289984-62290239(-)$1	255	121	139	10.8538
ffffffooooooffffff	chr19:2270300-2270560(+)$1	260	146	164	10.7894
ccccccooooooccc555	chr22:39917894-39918196(+)$1	302	237	255	8.4303
[eeeeeooooooeeeeeb	chr2:44547513-44547776(-)$1	263	163	181	9.7027
:eeeeeooooooeeeeed	chr8:27143492-27143757(-)$1	265	120	138	8.7155
ff[cccooooooccc22f	chr11:62291333-62291624(-)$1	291	257	275	10.6896
dddd[aooooooa]dddd	chr12:132401813-132402067(+)$1	254	17	35	9.6551
ggggggoooooogggggg	chr19:49841154-49841502(-)$1	348	169	187	11.3192
ccc[bboooooobbccc2	chr16:11981330-11981605(-)$1	275	13	31	10.0440
aeeeeeooooooeeeee]	chr11:2405685-2406015(+)$1	330	237	255	9.8950
c!!bboooooobb]ccc2	chr14:69928301-69928547(+)$1	246	210	228	8.3492
ffffffooooooffffff	chr10:75008950-75009190(-)$1	240	119	137	10.7894
ffffffooooooffffff	chr11:62296915-62297194(-)$1	279	105	123	10.7894
!!ddddoooooodddd22	chr1:154148602-154148824(-)$1	222	22	40	9.6293
ffffffooooooffffff	chr22:39131168-39131454(-)$1	286	141	159	10.7894
ffffffooooooffffff	chr19:5130925-5131211(+)$1	286	147	165	10.7894
dbbcccooooooccc]bb	chr7:77166715-77166997(+)$1	282	104	122	9.8790
ffffffooooooffffff	chr22:39918027-39918261(+)$1	234	195	213	10.7894
iiiiiiiiillliiiiii	chr8:145730527-145730791(-)$1	264	241	259	6.9880
iiiiiiinnnnniiiiii	chr22:29191277-29191547(-)$1	270	48	66	6.9175
ddddddoooooodddd]d	chr1:16719774-16720014(+)$1	240	42	60	9.5109
=========lll======	chr19:1592529-1592779(-)$1	250	164	182	7.6736
ffffffooooooffffff	chr17:73314702-73314972(-)$1	270	37	55	10.7894
bb[cccooooooccc]bb	chr22:20110048-20110318(+)$1	270	106	124	10.2529
=======nnnnn======	chr15:35271699-35271985(-)$1	286	133	151	7.2902
bb[cccoooooocccbbc	chr19:49964743-49965003(+)$1	260	142	160	10.1640
ffffffooooooffffff	chr9:140323184-140323437(+)$1	253	220	238	10.7894
eeee[aooooooa]eeee	chr1:28176883-28177200(+)$1	317	228	246	10.1050
!!ddddoooooodddd33	chr11:118472290-118472576(+)$1	286	255	273	10.1141
ffffffooooooffffff	chr16:448121-448349(+)$1	228	107	125	10.7894
e[ddddoooooodddd]e	chr1:205683472-205683717(-)$1	245	14	32	9.9032
ggggggoooooogggggg	chr19:2425969-2426221(-)$1	252	180	198	11.3192
=========lll======	chr13:99109374-99109659(-)$1	285	21	39	7.6736
hhhhhhoooooohhhhhh	chr17:56082266-56082506(-)$1	240	90	108	8.9789
ffffffooooooffffff	chr16:448890-449114(+)$1	224	6	24	10.7894
c[ddddoooooodddd]c	chr16:447772-448041(+)$1	269	225	243	10.1192
bb[cccoooooocccbbd	chr5:137688423-137688669(+)$1	246	37	55	10.0214
f"""bboooooobb4444	chr6:32157433-32157761(-)$1	328	66	84	9.6635
hhhhbboooooobb]hhh	chr19:1555249-1555530(-)$1	281	229	247	9.0584
:ccc[aooooooa]ccc:	chr15:38776583-38776805(+)$1	222	33	51	8.7704
gggcccooooooccceee	chr15:41562695-41562914(+)$1	219	94	112	10.9481
ccddddoooooodddd88	chr11:62292794-62293048(-)$1	254	159	177	9.0492
iiiiiiooooooiiiiii	chr8:23431091-23431352(+)$1	261	86	104	11.3061
ddddddoooooodddd]d	chr8:30669762-30670091(-)$1	329	289	307	9.5109

#otherMatches

#Seq PSSM
UGGGGGUGCCAGGCACCC	chr11:62482646-62482883(-)$1	237	155	173	6.9880
GCUGCCCUACGCGGAGCG	chr2:54197716-54197970(-)$1	254	159	177	10.5682
UCACCCCAAGGCGGGUGA	chr19:42752572-42752836(-)$1	264	146	164	11.3192
AAUAAGGCUAUGCUUAUU	chr1:43850074-43850323(-)$1	249	24	42	11.3192
GUCGUGGCGGAACGCGGC	chr19:49964946-49965219(+)$1	273	128	146	11.3192
GGCCUGAGACCCCACCCU	chr11:64894400-64894674(+)$1	274	65	83	10.1232
UUCACCGACAGUGAGUGA	chr19:7705434-7705718(+)$1	284	251	269	10.8077
GAGGCCCAGACUGGCACC	chr11:62289984-62290239(-)$1	255	121	139	10.8538
GCCCGGGACGCGCCGGGC	chr19:2270300-2270560(+)$1	260	146	164	10.7894
AGCCAGACUACACUGCUU	chr22:39917894-39918196(+)$1	302	237	255	8.4303
ACUGCCUUUGUCGGCAGA	chr2:44547513-44547776(-)$1	263	163	181	9.7027
GGGUCACAUUCCUGACCA	chr8:27143492-27143757(-)$1	265	120	138	8.7155
CCAAGUAUGAACAUUGAG	chr11:62291333-62291624(-)$1	291	257	275	10.6896
GGCUGUGGGACGGGGGUU	chr12:132401813-132402067(+)$1	254	17	35	9.6551
GGCUGAGGCGGGUCAGUC	chr19:49841154-49841502(-)$1	348	169	187	11.3192
CUUAGACACAAAUCAGGA	chr16:11981330-11981605(-)$1	275	13	31	10.0440
AGCAGGGAGGUGCCUGUA	chr11:2405685-2406015(+)$1	330	237	255	9.8950
AAACCCCCAAAGGAUGUU	chr14:69928301-69928547(+)$1	246	210	228	8.3492
AAGUAUUCCCAUGUGUUU	chr10:75008950-75009190(-)$1	240	119	137	10.7894
CCUUCCCAAAGUGGAAGG	chr11:62296915-62297194(-)$1	279	105	123	10.7894
CCUGAUCUUAAUGUCAUA	chr1:154148602-154148824(-)$1	222	22	40	9.6293
GGCCCUGAUGUAGGGGUC	chr22:39131168-39131454(-)$1	286	141	159	10.7894
UCCUCUUCCCACAGAGGA	chr19:5130925-5131211(+)$1	286	147	165	10.7894
ggcggcgggggggccAGC	chr7:77166715-77166997(+)$1	282	104	122	9.8790
CCCAGAGUCCUAUCUGGG	chr22:39918027-39918261(+)$1	234	195	213	10.7894
GUGUCAGGAAUGUCUUGG	chr8:145730527-145730791(-)$1	264	241	259	6.9880
CUUAGAGAUACCCUCUGA	chr22:29191277-29191547(-)$1	270	48	66	6.9175
CCCACCAGCAACGGUGUG	chr1:16719774-16720014(+)$1	240	42	60	9.5109
UGGGAGUGCCCGGCGCUC	chr19:1592529-1592779(-)$1	250	164	182	7.6736
UAUUCCUAUGCUGGGGUA	chr17:73314702-73314972(-)$1	270	37	55	10.7894
GUGUGGAGUCAGCCAGAC	chr22:20110048-20110318(+)$1	270	106	124	10.2529
AGGUGGGGGUGAUCUGCU	chr15:35271699-35271985(-)$1	286	133	151	7.2902
GGUGGCCCUCGUGCCCCC	chr19:49964743-49965003(+)$1	260	142	160	10.1640
GGCCAUGUCCAAGUGGCC	chr9:140323184-140323437(+)$1	253	220	238	10.7894
UGGGGUUGAAAUAGCCCA	chr1:28176883-28177200(+)$1	317	228	246	10.1050
CUGUCCAGUUAGGGAUUU	chr11:118472290-118472576(+)$1	286	255	273	10.1141
GCUGGGGCGGAGCUCAGC	chr16:448121-448349(+)$1	228	107	125	10.7894
UUCCCUUUGUCUGGGGUA	chr1:205683472-205683717(-)$1	245	14	32	9.9032
CCGGGUAUAGACACCUGG	chr19:2425969-2426221(-)$1	252	180	198	11.3192
GUGUUGUUCCUUGAACAG	chr13:99109374-99109659(-)$1	285	21	39	7.6736
GUGUCUUUCUGUAGACAU	chr17:56082266-56082506(-)$1	240	90	108	8.9789
GCCUGGUGACCCCUGGGC	chr16:448890-449114(+)$1	224	6	24	10.7894
AGGGGGUCUUCCUCCCGU	chr16:447772-448041(+)$1	269	225	243	10.1192
gcgcgggucaggccggcc	chr5:137688423-137688669(+)$1	246	37	55	10.0214
GCUAUGGACGAACGGCUA	chr6:32157433-32157761(-)$1	328	66	84	9.6635
AAAGGUCCGCUUGCACUU	chr19:1555249-1555530(-)$1	281	229	247	9.0584
gggugggagagguggcug	chr15:38776583-38776805(+)$1	222	33	51	8.7704
AAGAUCUCCCGUGAUGAG	chr15:41562695-41562914(+)$1	219	94	112	10.9481
GGGUCCCCAAGUGGACAU	chr11:62292794-62293048(-)$1	254	159	177	9.0492
UUUUAUCAGUCAGUGGAG	chr8:23431091-23431352(+)$1	261	86	104	11.3061
GGGGCUGGGACGGGCCGC	chr8:30669762-30670091(-)$1	329	289	307	9.5109

#DB
(((((((((...))))))	chr11:62482646-62482883(-)$1	1	155	173	6.9880
(((.((......))))))	chr2:54197716-54197970(-)$1	1	159	177	10.5682
((((((......))))))	chr19:42752572-42752836(-)$1	1	146	164	11.3192
((((((......))))))	chr1:43850074-43850323(-)$1	1	24	42	11.3192
((((((......))))))	chr19:49964946-49965219(+)$1	1	128	146	11.3192
((..((......)).)))	chr11:64894400-64894674(+)$1	1	65	83	10.1232
((((((......).))))	chr19:7705434-7705718(+)$1	1	251	269	10.8077
(.((((......))).).	chr11:62289984-62290239(-)$1	1	121	139	10.8538
((((((......))))))	chr19:2270300-2270560(+)$1	1	146	164	10.7894
((((((......)))...	chr22:39917894-39918196(+)$1	1	237	255	8.4303
.(((((......))))))	chr2:44547513-44547776(-)$1	1	163	181	9.7027
.(((((......)))))(	chr8:27143492-27143757(-)$1	1	120	138	8.7155
((.(((......)))..)	chr11:62291333-62291624(-)$1	1	257	275	10.6896
((((.(......).))))	chr12:132401813-132402067(+)$1	1	17	35	9.6551
((((((......))))))	chr19:49841154-49841502(-)$1	1	169	187	11.3192
(((.((......))))).	chr16:11981330-11981605(-)$1	1	13	31	10.0440
((((((......))))).	chr11:2405685-2406015(+)$1	1	237	255	9.8950
(..((......)).))).	chr14:69928301-69928547(+)$1	1	210	228	8.3492
((((((......))))))	chr10:75008950-75009190(-)$1	1	119	137	10.7894
((((((......))))))	chr11:62296915-62297194(-)$1	1	105	123	10.7894
..((((......))))..	chr1:154148602-154148824(-)$1	1	22	40	9.6293
((((((......))))))	chr22:39131168-39131454(-)$1	1	141	159	10.7894
((((((......))))))	chr19:5130925-5131211(+)$1	1	147	165	10.7894
((((((......))).))	chr7:77166715-77166997(+)$1	1	104	122	9.8790
((((((......))))))	chr22:39918027-39918261(+)$1	1	195	213	10.7894
(((((((((...))))))	chr8:145730527-145730791(-)$1	1	241	259	6.9880
(((((((.....))))))	chr22:29191277-29191547(-)$1	1	48	66	6.9175
((((((......)))).)	chr1:16719774-16720014(+)$1	1	42	60	9.5109
(((((((((...))))))	chr19:1592529-1592779(-)$1	1	164	182	7.6736
((((((......))))))	chr17:73314702-73314972(-)$1	1	37	55	10.7894
((.(((......))).))	chr22:20110048-20110318(+)$1	1	106	124	10.2529
(((((((.....))))))	chr15:35271699-35271985(-)$1	1	133	151	7.2902
((.(((......))))))	chr19:49964743-49965003(+)$1	1	142	160	10.1640
((((((......))))))	chr9:140323184-140323437(+)$1	1	220	238	10.7894
((((.(......).))))	chr1:28176883-28177200(+)$1	1	228	246	10.1050
..((((......))))..	chr11:118472290-118472576(+)$1	1	255	273	10.1141
((((((......))))))	chr16:448121-448349(+)$1	1	107	125	10.7894
(.((((......)))).)	chr1:205683472-205683717(-)$1	1	14	32	9.9032
((((((......))))))	chr19:2425969-2426221(-)$1	1	180	198	11.3192
(((((((((...))))))	chr13:99109374-99109659(-)$1	1	21	39	7.6736
((((((......))))))	chr17:56082266-56082506(-)$1	1	90	108	8.9789
((((((......))))))	chr16:448890-449114(+)$1	1	6	24	10.7894
(.((((......)))).)	chr16:447772-448041(+)$1	1	225	243	10.1192
((.(((......))))))	chr5:137688423-137688669(+)$1	1	37	55	10.0214
(...((......))....	chr6:32157433-32157761(-)$1	1	66	84	9.6635
((((((......)).)))	chr19:1555249-1555530(-)$1	1	229	247	9.0584
.(((.(......).))).	chr15:38776583-38776805(+)$1	1	33	51	8.7704
)))(((......)))(((	chr15:41562695-41562914(+)$1	1	94	112	10.9481
((((((......))))..	chr11:62292794-62293048(-)$1	1	159	177	9.0492
((((((......))))))	chr8:23431091-23431352(+)$1	1	86	104	11.3061
((((((......)))).)	chr8:30669762-30670091(-)$1	1	289	307	9.5109

#PSSM
f : 0.25	g : 0.13	c : 0.11	d : 0.09	i : 0.07	= : 0.05	b : 0.05	: : 0.03	! : 0.03	e : 0.03	h : 0.03	[ : 0.01	a : 0.01	
f : 0.23	g : 0.13	c : 0.09	i : 0.07	e : 0.07	b : 0.07	[ : 0.05	d : 0.05	! : 0.05	= : 0.05	h : 0.03	" : 0.01	
f : 0.21	d : 0.15	g : 0.13	i : 0.07	e : 0.07	[ : 0.07	c : 0.05	= : 0.05	! : 0.03	h : 0.03	a : 0.01	b : 0.01	" : 0.01	
f : 0.21	c : 0.17	d : 0.15	g : 0.09	i : 0.07	e : 0.07	= : 0.05	[ : 0.03	h : 0.03	! : 0.01	b : 0.01	" : 0.01	
f : 0.21	c : 0.15	d : 0.13	b : 0.11	g : 0.09	i : 0.07	e : 0.05	[ : 0.05	= : 0.05	h : 0.01	
f : 0.19	c : 0.15	d : 0.13	b : 0.09	g : 0.09	i : 0.07	a : 0.07	e : 0.05	= : 0.05	o : 0.01	h : 0.01	
o : 0.88	i : 0.05	= : 0.05	
o : 0.88	i : 0.03	n : 0.03	= : 0.03	
o : 0.88	i : 0.03	n : 0.03	= : 0.03	
o : 0.88	l : 0.07	n : 0.03	
o : 0.88	l : 0.07	n : 0.03	
o : 0.86	l : 0.07	n : 0.03	b : 0.01	
f : 0.19	c : 0.15	d : 0.13	b : 0.11	g : 0.09	i : 0.07	a : 0.07	e : 0.05	= : 0.05	h : 0.01	
f : 0.19	c : 0.15	d : 0.13	b : 0.09	g : 0.09	] : 0.09	i : 0.07	e : 0.05	= : 0.05	h : 0.01	
f : 0.21	c : 0.21	d : 0.15	g : 0.11	i : 0.07	e : 0.07	= : 0.05	] : 0.03	h : 0.01	4 : 0.01	
f : 0.21	d : 0.15	g : 0.11	e : 0.09	i : 0.07	c : 0.07	] : 0.05	= : 0.05	b : 0.03	h : 0.03	5 : 0.01	2 : 0.01	4 : 0.01	
f : 0.21	g : 0.11	e : 0.09	i : 0.07	c : 0.07	b : 0.07	] : 0.07	= : 0.05	2 : 0.03	h : 0.03	a : 0.01	5 : 0.01	d : 0.01	3 : 0.01	4 : 0.01	8 : 0.01	
f : 0.23	g : 0.11	d : 0.09	i : 0.07	c : 0.05	b : 0.05	2 : 0.05	= : 0.05	e : 0.05	] : 0.03	h : 0.03	5 : 0.01	3 : 0.01	4 : 0.01	: : 0.01	8 : 0.01	

#score	502.8421776588887
#seq	51
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_UTR_m1_run1.txt

#BEAR
gggggggggggg[cccrrrrrrrrrccc]ggggggg]	chr3:51425069-51425395(+)$1	326	45	82	12.3666
d[ccc[a[dddd[cccmmmmccc]dddd]a]cccddd	chr5:131528585-131528875(-)$1	290	214	251	11.7095
e"""ccc"""ffffffnnnnnffffff4444ccc]ee	chr1:66036140-66036525(+)$1	385	337	374	13.0337
::ccc!!a!!a[cccooooooccc]a22a22cccddd	chr15:64448217-64448444(-)$1	227	128	165	13.3458
##bb!!eeeee[cccooooooccc]eeeee22bbccc	chr1:160971017-160971243(-)$1	226	146	183	13.3586
gggggg!!eeeeeabblllbb]a]eeeee333ggggg	chr11:62649264-62649485(+)$1	221	3	40	11.5058
eee[bb####ccc[bboooooobb]cccbb]eeeee]	chr19:35657057-35657277(+)$1	220	42	79	12.1443
c!!ccc!!ccc"""ccclllccc4444cccccc22cc	chr16:18804550-18804793(-)$1	243	129	166	14.0692
bb"""ggggggg[bboooooobbggggggg333bb33	chr11:118924791-118925043(-)$1	252	131	168	13.6889
ccc[ggggggg[cccooooooccc]ggggggg]ccc:	chr12:46758088-46758383(-)$1	295	225	262	14.7596
ggggggg[gggggggooooooggggggg]gggggggc	chr15:89442787-89443032(-)$1	245	190	227	14.8566
ffa[dddd[ccc!!ccclllccc22ccc]dddd]a22	chr12:110782961-110783217(+)$1	256	113	150	11.5637
ccc[eeeee"""ddddoooooodddd333eeeee]cc	chr11:63521033-63521251(+)$1	218	104	141	13.2124
""dddd!!accc[cccnnnnncccccc]a22dddd]c	chr7:65440901-65441114(-)$1	213	130	167	13.7077
d[ccc"""a"""a[cccmmmmccc]a333a333ccc]	chr11:129999832-130000075(+)$1	243	104	141	15.5529
c[a"""dddd[ddddnnnnndddd]dddd333a]ccc	chr2:128886585-128886837(+)$1	252	117	154	11.4406
e[ggggggg!!a[cccnnnnnccc]a333ggggggg]	chr3:195798260-195798469(-)$1	209	16	53	16.9723
====[ggggggg[cccmmmmccc22ggggggg]====	chr1:92177699-92178011(-)$1	312	267	304	13.9202
b[ggggggg####ccclllccc4444ggggggg]bbc	chr12:49666607-49666877(+)$1	270	169	206	13.4385
b####ggggggg[cccooooooccc]ggggggg4444	chr15:72640288-72640536(-)$1	248	126	163	15.1985
ggggggg[gggggggooooooggggggg]gggggggf	chr15:89442626-89442864(-)$1	238	22	59	14.7325
eeee[bb[a[a[cccooooooccc]a]a]bb]eeeee	chr17:76967758-76968032(-)$1	274	115	152	13.4341
e[ccc[ccc[ffffffooooooffffffccc]ccc]e	chr5:10390487-10390712(+)$1	225	11	48	12.8110
e[ccc[ccc[ffffffooooooffffffccc]ccc]e	chr5:10390429-10390654(+)$1	225	69	106	12.8110
$$$dddd####ccc[aooooooaccc333ddddccc]	chr19:45422329-45422532(+)$1	203	118	155	13.7260
[cccccc!!ccc[bboooooobb]ccc22ccc]ccc]	chr1:77627178-77627441(-)$1	263	210	247	14.3494
##bba!!dddd!!cccooooooccc4444dddd22a]	chr15:45007630-45007847(+)$1	217	77	114	13.8116
ccc[eeeee"""ddddoooooodddd333eeeee]cc	chr11:63521051-63521276(+)$1	225	86	123	13.2124
c!!bb"""eeeeecccnnnnnccc]eeeee]bb22cc	chr5:143539848-143540156(-)$1	308	8	45	13.1388
"eeeee"""ccc[cccnnnnnccc]ccceeeee333e	chr1:111662398-111662682(-)$1	284	235	272	14.4626
ff"""ccc!!eeeeeooooooeeeee333ccc333ff	chr15:72648787-72649044(-)$1	257	27	64	13.6371
ddd!!============mmmm============4444	chr17:28789287-28789588(+)$1	301	204	241	13.1319
iiiiiiiii$$$$$cccmmmmccc333iiiiiiiii4	chr7:56146000-56146250(+)$1	250	179	216	13.9122
gggg$$$$$gggggggnnnnnggggggg4444ggggg	chr15:55652221-55652518(-)$1	297	29	66	13.4769
fffccc[eeeee[cccnnnnnccc]eeeee22ccc55	chr21:15747872-15748217(-)$1	345	149	186	12.1778
ddd[ccc[eeeee[cccmmmmccc]eeeee]ccc22d	chr14:23043899-23044160(-)$1	261	217	254	11.3309
:ggggggg[eeeeecccmmmmccc]eeeeeggggggg	chr2:63833894-63834228(+)$1	334	110	147	11.4623
=======[dddd[ccclllcccdddd22=========	chr14:68151643-68151923(-)$1	280	205	242	13.8990
==========[a!!bbmmmmbb22a]==========]	chr12:104326527-104326749(+)$1	222	43	80	12.8606
c[ccc[ggggggg[bbnnnnnbb]gggggggccc]cc	chr14:68157764-68158041(-)$1	277	129	166	13.6269
##ccc[ccc"""bb[bbmmmmbb]bb333cccccc33	chr4:155459024-155459326(-)$1	302	141	178	11.5382
=====ffffff[cccooooooccc]ffffff]=====	chr1:165737817-165738030(-)$1	213	79	116	14.5740
gggggg####bb[cccnnnnnccc]bb666666gggg	chr1:205683139-205683412(-)$1	273	155	192	12.3725
=======%%%%%%bboooooobb333===========	chr5:179149704-179149911(+)$1	207	103	140	12.6566
hhhhh"""dddd[cccnnnnnccc22dddd333hhhh	chrX:153662453-153662692(+)$1	239	66	103	12.7774
[ggggggg"""eeeeennnnneeeeeggggggg]bb6	chr1:207498925-207499163(+)$1	238	135	172	12.3212
ccdddd!!ccc[cccoooooocccccc22dddd]ccc	chr7:100856107-100856324(-)$1	217	115	152	13.9400
=======!!bb!!cccnnnnnccc]bb22========	chr17:26883744-26883982(-)$1	238	90	127	16.1541
"ggggggg[ccc[ddddooooooddddcccggggggg	chr12:110780973-110781266(+)$1	293	128	165	12.8167
iiiiiccc!!bb[ddddllldddd]bbccc]iiiiii	chr8:145066847-145067127(+)$1	280	200	237	12.4219
[iiiiiiiii####ccclllccc4444iiiiiiiii]	chr1:165712303-165712545(-)$1	242	74	111	15.0340
[ccc[a"""gggggggnnnnnggggggga]ccc]eee	chr11:2415223-2415441(+)$1	218	60	97	13.6852
gggeeeeeccc[ddddnnnnndddd22ccc22eeeee	chr14:21270039-21270282(-)$1	243	114	151	11.2778
=======ccc!!ddddnnnnndddd22ccc333====	chr15:58932873-58933175(-)$1	302	198	235	14.4004

#otherMatches

#Seq PSSM
GAGGAGAUGGCUCUCAAGCACCUCCUGAAGGCCAUUG	chr3:51425069-51425395(+)$1	326	45	82	12.3666
GUCAACGUGACAGACAccuuuguauguuccuuuguau	chr5:131528585-131528875(-)$1	290	214	251	11.7095
ACAAAUAGGUAAGCAUUAGCUAUGUUUUAAAUGUAUU	chr1:66036140-66036525(+)$1	385	337	374	13.0337
AGACAGACAGCCGGGAUAAACCCCUGAAGGAUGUGAU	chr15:64448217-64448444(-)$1	227	128	165	13.3458
AGUCAGAAUUCCUGAGAAUAAUCGUGAGUUGGGAGGG	chr1:160971017-160971243(-)$1	226	146	183	13.3586
CCUCCCCGUCCCACCCUUAGGCGCUGGGAGAAGGGAG	chr11:62649264-62649485(+)$1	221	3	40	11.5058
GGGAAGGAAAGGUGAGGUCCGUCUGACUCUACCCCUU	chr19:35657057-35657277(+)$1	220	42	79	12.1443
AAACCAACAUGGAAUCAUUUUGAAGUACAUUGGAAUG	chr16:18804550-18804793(-)$1	243	129	166	14.0692
GUAUGCACCAUUGUGACCUACCAGAUGGUGAAGACUA	chr11:118924791-118925043(-)$1	252	131	168	13.6889
CUUAUUUUCUCAAAAGAAGAGUUUAGGGAAGAAAAGA	chr12:46758088-46758383(-)$1	295	225	262	14.7596
CUUCCCUGGGAGUCUGGCCUGGGGCUCUGAGGGGAGG	chr15:89442787-89443032(-)$1	245	190	227	14.8566
GAGGACAACCCGGACUUUGAAGGCGUGGAUUGUGCAA	chr12:110782961-110783217(+)$1	256	113	150	11.5637
ACUGCUCAUUUUCAGUGUCCCGAUUGUCUAUGAGAAG	chr11:63521033-63521251(+)$1	218	104	141	13.2124
CAUGCCUAAGGGAGGUCUUUUGCCCCCAUGUGGUGAC	chr7:65440901-65441114(-)$1	213	130	167	13.7077
AUCGCAUUCUCCAGGCCUUACGGCGUUAUGUCCGUGC	chr11:129999832-130000075(+)$1	243	104	141	15.5529
CAGCCCUCUGAGGCAGACUAUGCCGUAGACAUCCGGA	chr2:128886585-128886837(+)$1	252	117	154	11.4406
AUAAUGCAAGACAUACUAAAUGUAAGCUAUUGUGUUU	chr3:195798260-195798469(-)$1	209	16	53	16.9723
AAAAGUUUAAUCCCAAGGUCUUGCAGGUUGAGGUUUU	chr1:92177699-92178011(-)$1	312	267	304	13.9202
AGAGCUGUGUGCAUGCUGAGCAAUACCACAGCUGUUG	chr12:49666607-49666877(+)$1	270	169	206	13.4385
UGGAGUCCUUCUACAUCCAGACGUGAGGAAGGAAGGA	chr15:72640288-72640536(-)$1	248	126	163	15.1985
CUUCCCUGGGAGUCUGGCCUGGGGCUCUGAGGGGAGG	chr15:89442626-89442864(-)$1	238	22	59	14.7325
AGCUCCCUGUCCUGGGCCUCACCAAGUCUGGCGGCUC	chr17:76967758-76968032(-)$1	274	115	152	13.4341
UGUGCAUUCAUCAGCCUGGUGUGGUUGAGAGAGCAGA	chr5:10390487-10390712(+)$1	225	11	48	12.8110
UGUGCAUUCAUCAGCCUGGUGUGGUUGAGAGAGCAGA	chr5:10390429-10390654(+)$1	225	69	106	12.8110
AUUUCAGAAAGUGAAGGAGAAACUCAAGAUUGACUCA	chr19:45422329-45422532(+)$1	203	118	155	13.7260
CUAUUUCUGAAACCAAUUAAAUGCUUUAUGAAUGUAU	chr1:77627178-77627441(-)$1	263	210	247	14.3494
CAUCCGACAUUGAAGUUGACUUACUGAAGAAUGGAGA	chr15:45007630-45007847(+)$1	217	77	114	13.8116
ACUGCUCAUUUUCAGUGUCCCGAUUGUCUAUGAGAAG	chr11:63521051-63521276(+)$1	225	86	123	13.2124
CCCCCUUUUUCCUUGUUGUUUACAGAGGAAUGGUAGG	chr5:143539848-143540156(-)$1	308	8	45	13.1388
GAUUGAUCUUGAUAUGUUUUUCAUUUCAUCAGUAACA	chr1:111662398-111662682(-)$1	284	235	272	14.4626
GUUUUGCCUGUUGCUUCUAAUGGCAGGUUGGCCGCAC	chr15:72648787-72649044(-)$1	257	27	64	13.6371
AGACAUUUUGAUUUUUAGUAGUAAAAGUUAAAAACAA	chr17:28789287-28789588(+)$1	301	204	241	13.1319
ACCGGGCCCGGGUCACCACCAGGUAAGGGGCUUGGUC	chr7:56146000-56146250(+)$1	250	179	216	13.9122
UGCCAUGAAGAAUUCUACCAAGGAGUUUGUAAGGCAU	chr15:55652221-55652518(-)$1	297	29	66	13.4769
UCUUCCACGUCUUGGUGAUAGACUUGGGCGGAGGAAC	chr21:15747872-15748217(-)$1	345	149	186	12.1778
AGUCCUUGUCCUAUAAUGUUGAUUUUAGGAAGAGAAA	chr14:23043899-23044160(-)$1	261	217	254	11.3309
UGGAAGUUUGUUGAAGGUCUCCCUAUUAAUGAUUUCU	chr2:63833894-63834228(+)$1	334	110	147	11.4623
CUCUUUUUGCAGAUGAGAUUUAUUGCUCAAAGGAGAU	chr14:68151643-68151923(-)$1	280	205	242	13.8990
AGUCUAAGUGUAUUCCCUCUGGCUUCCAUUUAGAUUU	chr12:104326527-104326749(+)$1	222	43	80	12.8606
UCCGUACUCGAAGACAGCAGAUGGCUUUGAGAUGCAC	chr14:68157764-68158041(-)$1	277	129	166	13.6269
UUCCGGUCAUAAUGCUAUUAUUAACACAUUGACGGUA	chr4:155459024-155459326(-)$1	302	141	178	11.5382
UUAUCUCUGUGUGCACGGCUCUGCUCGCAGAGGGUGA	chr1:165737817-165738030(-)$1	213	79	116	14.5740
UCUGGAACUUAGUGAAUUCUUUUCUCUUUUUCCUCCA	chr1:205683139-205683412(-)$1	273	155	192	12.3725
AUCUGGAAACCCAGGAAAAUACCAAAUCCAGAUUUCU	chr5:179149704-179149911(+)$1	207	103	140	12.6566
CUGCUGAAAGAAGGCUGGUUGGGUGUUUCUGCAGGUG	chrX:153662453-153662692(+)$1	239	66	103	12.7774
CACAGGGUAAGUUUGGGCAUACUAAAACCCUGUAUUU	chr1:207498925-207499163(+)$1	238	135	172	12.3212
CUGGGAAACUACGUCCCCAAUGGCUGGACUCCUGAGG	chr7:100856107-100856324(-)$1	217	115	152	13.9400
CCAGUGGCCACCAAUGCCUUCCAUAGUCCCCGCUGGG	chr17:26883744-26883982(-)$1	238	90	127	16.1541
AUCUGGUGACAGAUGGCCUGCCUGCCACUGCACUGGG	chr12:110780973-110781266(+)$1	293	128	165	12.8167
CUGGCCUGGACCCUGCCCCUGGCACGGCAGUGCCAGC	chr8:145066847-145067127(+)$1	280	200	237	12.4219
UGGGAGAUGACACCACAGACUGUUCCUUCAUUUUCCU	chr1:165712303-165712545(-)$1	242	74	111	15.0340
CGAGUGUGUAGGCACCCACCUGGUGUCUCUCUCCCCG	chr11:2415223-2415441(+)$1	218	60	97	13.6852
GGGCUGGGUCCAGCCUUCCCUGGGCAAGGAAUCCCGG	chr14:21270039-21270282(-)$1	243	114	151	11.2778
AGGUAGUUUAUCAUAUUAAAUAUGUCUUAACUUACUA	chr15:58932873-58933175(-)$1	302	198	235	14.4004

#DB
((((((((((((.(((.........))).))))))).	chr3:51425069-51425395(+)$1	1	45	82	12.3666
(.(((.(.((((.(((....))).)))).).))))))	chr5:131528585-131528875(-)$1	1	214	251	11.7095
(...(((...((((((.....))))))....))).))	chr1:66036140-66036525(+)$1	1	337	374	13.0337
..(((..(..(.(((......))).)..)..)))(((	chr15:64448217-64448444(-)$1	1	128	165	13.3458
..((..(((((.(((......))).)))))..)))))	chr1:160971017-160971243(-)$1	1	146	183	13.3586
((((((..((((((((...)).).)))))...)))))	chr11:62649264-62649485(+)$1	1	3	40	11.5058
(((.((....(((.((......)).))))).))))).	chr19:35657057-35657277(+)$1	1	42	79	12.1443
(..(((..(((...(((...)))....))))))..))	chr16:18804550-18804793(-)$1	1	129	166	14.0692
((...(((((((.((......)))))))))...))..	chr11:118924791-118925043(-)$1	1	131	168	13.6889
(((.(((((((.(((......))).))))))).))).	chr12:46758088-46758383(-)$1	1	225	262	14.7596
(((((((.(((((((......))))))).)))))))(	chr15:89442787-89443032(-)$1	1	190	227	14.8566
(((.((((.(((..(((...)))..))).)))).)..	chr12:110782961-110783217(+)$1	1	113	150	11.5637
(((.(((((...((((......))))...))))).))	chr11:63521033-63521251(+)$1	1	104	141	13.2124
..((((..((((.(((.....)))))).)..)))).)	chr7:65440901-65441114(-)$1	1	130	167	13.7077
(.(((...(...(.(((....))).)...)...))).	chr11:129999832-130000075(+)$1	1	104	141	15.5529
(.(...((((.((((.....)))).))))...).)))	chr2:128886585-128886837(+)$1	1	117	154	11.4406
(.(((((((..(.(((.....))).)...))))))).	chr3:195798260-195798469(-)$1	1	16	53	16.9723
((((.(((((((.(((....)))..))))))).))))	chr1:92177699-92178011(-)$1	1	267	304	13.9202
(.(((((((....(((...)))....))))))).)))	chr12:49666607-49666877(+)$1	1	169	206	13.4385
(....(((((((.(((......))).)))))))....	chr15:72640288-72640536(-)$1	1	126	163	15.1985
(((((((.(((((((......))))))).)))))))(	chr15:89442626-89442864(-)$1	1	22	59	14.7325
((((.((.(.(.(((......))).).).)).)))))	chr17:76967758-76968032(-)$1	1	115	152	13.4341
(.(((.(((.((((((......))))))))).))).)	chr5:10390487-10390712(+)$1	1	11	48	12.8110
(.(((.(((.((((((......))))))))).))).)	chr5:10390429-10390654(+)$1	1	69	106	12.8110
...((((....(((.(......))))...))))))).	chr19:45422329-45422532(+)$1	1	118	155	13.7260
.((((((..(((.((......)).)))..))).))).	chr1:77627178-77627441(-)$1	1	210	247	14.3494
..(((..((((..(((......)))....))))..).	chr15:45007630-45007847(+)$1	1	77	114	13.8116
(((.(((((...((((......))))...))))).))	chr11:63521051-63521276(+)$1	1	86	123	13.2124
(..((...((((((((.....))).))))).))..))	chr5:143539848-143540156(-)$1	1	8	45	13.1388
.(((((...(((.(((.....))).))))))))...)	chr1:111662398-111662682(-)$1	1	235	272	14.4626
((...(((..(((((......)))))...)))...))	chr15:72648787-72649044(-)$1	1	27	64	13.6371
(((..((((((((((((....))))))))))))....	chr17:28789287-28789588(+)$1	1	204	241	13.1319
(((((((((.....(((....)))...))))))))).	chr7:56146000-56146250(+)$1	1	179	216	13.9122
((((.....(((((((.....)))))))....)))))	chr15:55652221-55652518(-)$1	1	29	66	13.4769
((((((.(((((.(((.....))).)))))..)))..	chr21:15747872-15748217(-)$1	1	149	186	12.1778
(((.(((.(((((.(((....))).))))).)))..)	chr14:23043899-23044160(-)$1	1	217	254	11.3309
.(((((((.((((((((....))).))))))))))))	chr2:63833894-63834228(+)$1	1	110	147	11.4623
(((((((.((((.(((...)))))))..)))))))))	chr14:68151643-68151923(-)$1	1	205	242	13.8990
((((((((((.(..((....))..).)))))))))).	chr12:104326527-104326749(+)$1	1	43	80	12.8606
(.(((.(((((((.((.....)).)))))))))).))	chr14:68157764-68158041(-)$1	1	129	166	13.6269
..(((.(((...((.((....)).))...))))))..	chr4:155459024-155459326(-)$1	1	141	178	11.5382
(((((((((((.(((......))).)))))).)))))	chr1:165737817-165738030(-)$1	1	79	116	14.5740
((((((....((.(((.....))).))......))))	chr1:205683139-205683412(-)$1	1	155	192	12.3725
(((((((......((......))...)))))))))))	chr5:179149704-179149911(+)$1	1	103	140	12.6566
(((((...((((.(((.....)))..))))...))))	chrX:153662453-153662692(+)$1	1	66	103	12.7774
.(((((((...(((((.....)))))))))))).)).	chr1:207498925-207499163(+)$1	1	135	172	12.3212
((((((..(((.(((......))))))..)))).)))	chr7:100856107-100856324(-)$1	1	115	152	13.9400
(((((((..((..(((.....))).))..))))))))	chr17:26883744-26883982(-)$1	1	90	127	16.1541
.(((((((.(((.((((......))))))))))))))	chr12:110780973-110781266(+)$1	1	128	165	12.8167
((((((((..((.((((...)))).))))).))))))	chr8:145066847-145067127(+)$1	1	200	237	12.4219
.(((((((((....(((...)))....))))))))).	chr1:165712303-165712545(-)$1	1	74	111	15.0340
.(((.(...(((((((.....)))))))).))).)))	chr11:2415223-2415441(+)$1	1	60	97	13.6852
(((((((((((.((((.....))))..)))..)))))	chr14:21270039-21270282(-)$1	1	114	151	11.2778
((((((((((..((((.....))))..)))...))))	chr15:58932873-58933175(-)$1	1	198	235	14.4004

#PSSM
c : 0.14	g : 0.12	= : 0.12	e : 0.11	d : 0.07	[ : 0.07	# : 0.05	b : 0.05	f : 0.05	" : 0.05	: : 0.03	i : 0.03	$ : 0.01	h : 0.01	
g : 0.18	[ : 0.14	= : 0.12	c : 0.11	# : 0.07	e : 0.05	f : 0.05	i : 0.05	" : 0.03	! : 0.03	d : 0.03	: : 0.01	b : 0.01	$ : 0.01	h : 0.01	
g : 0.22	c : 0.22	= : 0.12	d : 0.07	" : 0.05	e : 0.05	i : 0.05	b : 0.03	! : 0.03	a : 0.03	# : 0.01	$ : 0.01	f : 0.01	h : 0.01	
g : 0.20	c : 0.20	= : 0.12	[ : 0.11	" : 0.07	b : 0.05	d : 0.05	e : 0.05	i : 0.05	# : 0.01	! : 0.01	h : 0.01	
c : 0.22	g : 0.20	= : 0.11	d : 0.07	e : 0.07	" : 0.05	[ : 0.05	i : 0.05	! : 0.03	b : 0.03	# : 0.01	a : 0.01	$ : 0.01	h : 0.01	
g : 0.25	c : 0.12	= : 0.11	[ : 0.09	d : 0.07	e : 0.07	" : 0.07	! : 0.05	b : 0.03	i : 0.03	$ : 0.01	f : 0.01	a : 0.01	
g : 0.24	c : 0.14	! : 0.11	= : 0.11	" : 0.09	e : 0.07	d : 0.05	# : 0.03	i : 0.03	a : 0.01	b : 0.01	$ : 0.01	[ : 0.01	f : 0.01	
g : 0.20	[ : 0.11	" : 0.11	! : 0.11	c : 0.11	e : 0.09	# : 0.05	d : 0.05	= : 0.03	i : 0.03	a : 0.01	$ : 0.01	f : 0.01	% : 0.01	
g : 0.18	e : 0.12	c : 0.12	d : 0.09	! : 0.09	" : 0.07	# : 0.05	[ : 0.05	a : 0.05	= : 0.03	i : 0.03	$ : 0.01	f : 0.01	% : 0.01	
g : 0.18	c : 0.16	" : 0.11	e : 0.11	d : 0.09	! : 0.07	# : 0.07	[ : 0.05	= : 0.03	$ : 0.01	f : 0.01	% : 0.01	b : 0.01	i : 0.01	
g : 0.18	c : 0.16	e : 0.12	" : 0.09	d : 0.07	f : 0.07	# : 0.05	b : 0.05	a : 0.03	[ : 0.03	! : 0.03	= : 0.01	$ : 0.01	% : 0.01	
g : 0.16	[ : 0.12	e : 0.12	c : 0.12	" : 0.09	d : 0.07	f : 0.05	! : 0.05	a : 0.03	# : 0.03	b : 0.03	= : 0.01	$ : 0.01	% : 0.01	
[ : 0.27	c : 0.14	e : 0.11	g : 0.09	d : 0.09	! : 0.07	f : 0.05	# : 0.03	" : 0.01	a : 0.01	= : 0.01	$ : 0.01	b : 0.01	% : 0.01	
c : 0.40	d : 0.12	[ : 0.07	b : 0.07	g : 0.07	f : 0.05	e : 0.05	! : 0.03	a : 0.01	" : 0.01	= : 0.01	$ : 0.01	# : 0.01	
c : 0.51	b : 0.12	d : 0.12	g : 0.07	f : 0.05	[ : 0.03	e : 0.03	= : 0.01	
c : 0.40	o : 0.22	d : 0.11	b : 0.09	f : 0.05	g : 0.03	n : 0.01	a : 0.01	= : 0.01	e : 0.01	
o : 0.37	n : 0.29	c : 0.12	m : 0.05	l : 0.05	d : 0.03	r : 0.01	= : 0.01	b : 0.01	
o : 0.38	n : 0.29	m : 0.16	l : 0.12	r : 0.01	
o : 0.38	n : 0.29	m : 0.16	l : 0.12	r : 0.01	
o : 0.38	n : 0.29	m : 0.16	l : 0.07	c : 0.03	r : 0.01	b : 0.01	
o : 0.38	n : 0.27	c : 0.12	m : 0.11	b : 0.03	d : 0.03	r : 0.01	
c : 0.46	o : 0.16	b : 0.11	g : 0.07	d : 0.07	e : 0.03	r : 0.01	f : 0.01	] : 0.01	= : 0.01	
c : 0.46	d : 0.12	b : 0.11	g : 0.07	f : 0.05	a : 0.03	e : 0.03	r : 0.01	4 : 0.01	= : 0.01	2 : 0.01	o : 0.01	
c : 0.38	d : 0.14	] : 0.09	g : 0.09	f : 0.05	4 : 0.05	2 : 0.05	e : 0.03	r : 0.01	b : 0.01	= : 0.01	3 : 0.01	
] : 0.31	d : 0.12	g : 0.11	c : 0.11	f : 0.05	e : 0.05	4 : 0.05	2 : 0.05	3 : 0.03	r : 0.01	= : 0.01	a : 0.01	b : 0.01	
c : 0.14	e : 0.14	g : 0.14	d : 0.11	f : 0.07	a : 0.07	4 : 0.07	b : 0.07	2 : 0.05	] : 0.03	3 : 0.03	= : 0.01	
g : 0.20	3 : 0.14	c : 0.12	e : 0.11	d : 0.07	f : 0.07	2 : 0.07	4 : 0.05	= : 0.05	b : 0.05	] : 0.01	
g : 0.20	c : 0.16	3 : 0.12	e : 0.11	2 : 0.09	d : 0.05	f : 0.05	= : 0.05	4 : 0.03	i : 0.03	] : 0.01	a : 0.01	6 : 0.01	
e : 0.12	c : 0.12	g : 0.12	3 : 0.12	] : 0.11	= : 0.07	4 : 0.05	a : 0.05	2 : 0.05	d : 0.03	i : 0.03	b : 0.01	f : 0.01	6 : 0.01	
g : 0.20	c : 0.18	e : 0.14	d : 0.09	= : 0.09	a : 0.03	4 : 0.03	2 : 0.03	3 : 0.03	b : 0.03	i : 0.03	f : 0.01	6 : 0.01	] : 0.01	
g : 0.22	c : 0.12	3 : 0.11	] : 0.09	2 : 0.09	= : 0.09	d : 0.07	e : 0.05	4 : 0.03	i : 0.03	b : 0.01	f : 0.01	6 : 0.01	
g : 0.20	c : 0.18	3 : 0.11	d : 0.09	= : 0.09	e : 0.07	] : 0.07	2 : 0.05	i : 0.05	b : 0.01	4 : 0.01	6 : 0.01	
g : 0.20	c : 0.20	e : 0.11	= : 0.11	3 : 0.09	d : 0.09	] : 0.05	i : 0.05	b : 0.03	a : 0.01	6 : 0.01	
c : 0.24	g : 0.16	= : 0.12	] : 0.11	e : 0.09	2 : 0.05	i : 0.05	b : 0.03	4 : 0.03	3 : 0.03	d : 0.01	h : 0.01	
c : 0.20	g : 0.16	= : 0.12	] : 0.07	e : 0.07	2 : 0.07	d : 0.05	b : 0.05	i : 0.05	4 : 0.03	3 : 0.03	a : 0.01	h : 0.01	
c : 0.22	g : 0.16	= : 0.12	e : 0.09	3 : 0.05	] : 0.05	i : 0.05	d : 0.03	2 : 0.03	b : 0.03	4 : 0.03	a : 0.01	f : 0.01	5 : 0.01	h : 0.01	
c : 0.20	] : 0.16	e : 0.12	= : 0.11	g : 0.09	d : 0.05	4 : 0.05	3 : 0.03	f : 0.03	: : 0.01	2 : 0.01	5 : 0.01	h : 0.01	6 : 0.01	i : 0.01	

#score	721.8229026748907
#seq	54
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_CDS_m1_run1.txt

#BEAR
eeee"""ffffff[ddddooooooddddffffff22eeee	chr19:58790250-58790601(+)$1	351	76	116	16.8131
gg[dddd[ffffffddddoooooodddd]ffffffddddg	chr9:37800777-37801072(+)$1	295	84	124	16.9434
===[ccc[a[bb[eeeeeooooooeeeeebba]ccc====	chr17:40729555-40729823(-)$1	268	190	230	16.7392
ii:iiiiiiiiiccc[ddddmmmmdddd]ccc22iiiiii	chr18:21017713-21018024(-)$1	311	113	153	13.4938
==[ccc[bb"""a[ddddoooooodddd]a22bb]ccc==	chr2:242447765-242448089(-)$1	324	185	225	18.9379
ccc!!ccc"""cccddddoooooodddd]cccccc]ccc4	chr12:56211739-56212015(+)$1	276	120	160	20.0485
ggg============!!ddddllldddd333=========	chr9:131790320-131790607(-)$1	287	96	136	15.8494
:eeeee[gggggggddddoooooodddd333gggggggee	chr12:107168311-107168688(+)$1	377	206	246	18.2214
cc[bb[ggggggg[bb[aooooooa]bbggggggg]bbcc	chr13:40229723-40230075(+)$1	352	88	128	14.4050
[ccc"""dddd"""ddddoooooodddd333dddd55555	chr16:23652706-23653017(+)$1	311	64	104	15.1525
ggccceeeee[bb[ddddoooooodddd]bb]eeeee22c	chr1:11866189-11866459(+)$1	270	150	190	17.9823
eeeee[ccc[ddddddddoooooodddd22dddd]cccee	chr16:31519487-31519800(-)$1	313	131	171	17.5730
c!!ccc!!eeeee!!a[aooooooaa22eeeeeccc22cc	chr17:75277480-75277738(+)$1	258	89	129	14.7564
:::iiiiiiiii!!ddddoooooodddd]iiiiiiiiibb	chr16:718019-718323(+)$1	304	133	173	17.0142
[a[ccc"""ccc[ddddammmma]dddd]ccc]ccc]a]d	chr7:6048511-6048820(-)$1	309	128	168	16.1581
dd[a[ggggggg!!ddddooooooddddggggggg333a]	chr16:67143884-67144233(+)$1	349	197	237	19.8225
[a"""=============oooooo=============333	chr9:127905613-127905874(-)$1	261	191	231	18.6129
iiiiiccca[ddddddddoooooodddd22dddd]a]ccc	chr7:129710300-129710604(+)$1	304	174	214	18.0466
[ggggggg!!ccc[ddddoooooodddd]ccc]ggggggg	chr2:190656415-190656665(+)$1	250	83	123	20.8970
!eeeee"""ccc!!ddddoooooodddd22ccceeeee]d	chr8:21946595-21946916(+)$1	321	146	186	19.9075
""ffffff"""ccc[cccooooooccccccffffff4444	chr7:44084222-44084511(+)$1	289	115	155	15.8972
ddccc[ccc[ccc[ddddmmmmdddd22cccccc]ccc]d	chr14:31091424-31091704(+)$1	280	165	205	13.9433
ddccc[ffffff!!ddddoooooodddd]ffffff]ccc:	chr2:85843210-85843474(+)$1	264	126	166	17.3541
eeee[ccc[ccc!!ddddooooooddddccc]ccc333ee	chr14:74769478-74769744(-)$1	266	210	250	19.8382
[dddd[ccc[bbbb!!cccooooooccc]bb]bbccc]dd	chr1:895885-896216(+)$1	331	173	213	14.2254
ddd[ccc####gggggggoooooogggggggccc]ddddD	chr11:93474504-93474760(-)$1	256	93	133	14.7311
!eeeee[ccc!!a[ddddoooooodddd]accc]eeeee]	chr1:154600224-154600500(-)$1	276	57	97	19.6118
ff::ccc"""ccc[ddddoooooodddd]ccc4444ccc:	chr19:15784228-15784526(+)$1	298	109	149	17.4071
eeeeeccc[ccc"""cccnnnnnccc333ccc]ccc]eee	chr6:160147791-160148076(-)$1	285	136	176	13.4491
==========bb[eeeeeooooooeeeeebb4444=====	chr17:42148183-42148474(+)$1	291	63	103	16.9650
KKFFFFFFccc"""ddddoooooodddd]ccc========	chr1:43232860-43233175(+)$1	315	43	83	15.7450
f"""ggggggg!!a[cccooooooccca]gggggggffff	chr16:23521541-23521909(-)$1	368	123	163	16.6859
:dddd[ccc[dddd[aooooooa]dddd]cccddddiiii	chr7:73038691-73038930(-)$1	239	87	127	14.2238
ggg!!ccc!!ccc[ddddoooooodddd]cccccc22ggg	chr8:37962950-37963283(+)$1	333	248	288	20.4634
d"""dddd####eeeeeooooooeeeee333ddddddddg	chr8:74790874-74791175(-)$1	301	88	128	14.1614
eeee[eeeeebb[ccccccooooooccc]ccc]bb4444e	chr18:12419878-12420195(+)$1	317	267	307	14.9766
fffeeeee[ccc"""ddddnnnnndddd333ccc]eeeee	chr19:18632630-18632970(-)$1	340	253	293	14.7216
""ccc####a[a!!ddddllldddd22a]accc=======	chr1:76190339-76190622(+)$1	283	113	153	15.3077
[dddd[a[ccc"""a[ddddmmmmdddd]accc]a22ddd	chr6:35888728-35888983(-)$1	255	4	44	14.2081
[dddd[ggggggg[eeeeeooooooeeeee]ggggggg22	chr2:97405581-97405891(-)$1	310	200	240	14.9739
cc[eeeee"""gggggggooooooggggggg22eeeee]c	chr15:64443828-64444143(+)$1	315	42	82	15.3559
ggccceeeee[bb[ddddoooooodddd]bb]eeeee22c	chr1:11866259-11866509(+)$1	250	80	120	17.9823
c!!dddd[cccbb[cccoooooocccbb]cccddddccc2	chr5:140018940-140019325(+)$1	385	171	211	14.8766
===============[bboooooobb]=============	chr16:88923103-88923455(-)$1	352	172	212	17.3760
===========bb[ddddmmmmdddd]bb]==========	chr10:74451805-74452159(+)$1	354	128	168	14.6083
=========cccddddqqqqqqqqdddd]ccc]=======	chr15:30114100-30114364(-)$1	264	78	118	14.0374
geeeee####bb!!ddddoooooodddd22bbeeeee22g	chr18:23670365-23670696(-)$1	331	116	156	18.6852
!!ggggggg[ccc[ddddmmmmdddd]ccc4444gggggg	chr12:7261611-7261916(-)$1	305	14	54	14.4875
[eeeee####ccc[eeeeemmmmeeeee]ccceeeee]dd	chr21:44313307-44313600(+)$1	293	136	176	13.3003
cc[dddd!!cccccc!!bboooooobb22ccc]ccc22dd	chr1:94883916-94884161(+)$1	245	70	110	14.3709
[ccc[=============oooooo=============22c	chr9:72873845-72874149(+)$1	304	59	99	18.1525
dd[ccca[dddd!!ddddoooooodddd22dddd22a]cc	chr11:67771369-67771676(-)$1	307	205	245	18.0694

#otherMatches

#Seq PSSM
GCCGCGUCGCCGGUGCGGCCGCCAUUGUCCGGCGUUCGGC	chr19:58790250-58790601(+)$1	351	76	116	16.8131
UCAUGUUUCCCUUUGGGCCCCAUAGCCCUGGAGGGGACGG	chr9:37800777-37801072(+)$1	295	84	124	16.9434
CAGUGGGUGAGGAGGUCGGUUGAGUGGCCCCCUCCCCUGC	chr17:40729555-40729823(-)$1	268	190	230	16.7392
gcugccgcugccgcugcugcugcugcGGGGGUCGGGCGGC	chr18:21017713-21018024(-)$1	311	113	153	13.4938
GGCGCUGCAgagcgggccgggggaggccgggauggagccc	chr2:242447765-242448089(-)$1	324	185	225	18.9379
GCCGCGCCCAUAGCCGGACGGGGAUCUGAGCUGGCAGGUA	chr12:56211739-56212015(+)$1	276	120	160	20.0485
GGUGCGGUUggcggcggcggcugggccgggggcugccggc	chr9:131790320-131790607(-)$1	287	96	136	15.8494
GCGGCCAUGGAUGAGGAGCGCGCCCUCUACAUCGUCCGGG	chr12:107168311-107168688(+)$1	377	206	246	18.2214
CCGUGGUCCCUGCCUGGCUGAGGUGGCAGCAGGGGGCGGG	chr13:40229723-40230075(+)$1	352	88	128	14.4050
AAGUGGAGGAGCGGCCGGAAGUAGCCGGAAUCUCUGAAAG	chr16:23652706-23653017(+)$1	311	64	104	15.1525
UCUGUGCUGCUGCUGCAGGUGGUGCUGCUGCUGCGGUGAG	chr1:11866189-11866459(+)$1	270	150	190	17.9823
CCCCGCUGUGUUCCGAGCAGUUCGGCUCCGGGGAGGCACG	chr16:31519487-31519800(-)$1	313	131	171	17.5730
GCUGCCUCGCCGCCACACUUUCCUGGGAGCGGCGGCCACG	chr17:75277480-75277738(+)$1	258	89	129	14.7564
aggucggggccggguuccgggucggggagcggCUCCGGGC	chr16:718019-718323(+)$1	304	133	173	17.0142
GGGAACUUUCCCAGUCCCCGAGGCGGAUCGGGUGUUGCAU	chr7:6048511-6048820(-)$1	309	128	168	16.1581
CUGGACCUGGAGGUAGUGCCCGAACGCUCUCUGGGGAACG	chr16:67143884-67144233(+)$1	349	197	237	19.8225
CGGAGUCGCCUGGCCCCcaggugcgggggcuggguggagg	chr9:127905613-127905874(-)$1	261	191	231	18.6129
UAGCGGGUCAUGUCGGCCGCCCAgggcugggacaggaacc	chr7:129710300-129710604(+)$1	304	174	214	18.0466
GCAUUUUUAUCUUCUAGCUGCUCUGUUAAAAGCGAAAAUG	chr2:190656415-190656665(+)$1	250	83	123	20.8970
GGAGCCGGGGGCCGGGCGCCAUCAUGCUGAGCCGGCUCGG	chr8:21946595-21946916(+)$1	321	146	186	19.9075
UGGCGGCGAACCUGAGCCGGAACGGGCCAGCGCUGCAAGA	chr7:44084222-44084511(+)$1	289	115	155	15.8972
CGGGAAAGGCAGACAGGUACUGACUUAUUCUCUUCUCCUU	chr14:31091424-31091704(+)$1	280	165	205	13.9433
CGGGAGUCUCGCGGUUCCACUCGCGGGAAGCGAGAGUCUG	chr2:85843210-85843474(+)$1	264	126	166	17.3541
GGGCUGUAGGGAAUGGGCUUUCCUGCCCUCCGUGCCUCGU	chr14:74769478-74769744(-)$1	266	210	250	19.8382
GGGUCCGGCAGCCGAAUGCAGCCCCGCAGCGAGCGCCCGG	chr1:895885-896216(+)$1	331	173	213	14.2254
GCCAACCCUUUUCUUCCGCACGGUUGGAGGAGGUCGGCUG	chr11:93474504-93474760(-)$1	256	93	133	14.7311
AUUCCCGACUGAAGGUAGAGAAGGCUACGUGGUGGGGGAG	chr1:154600224-154600500(-)$1	276	57	97	19.6118
GGAUGUCGCUGCUGAGCCUGCCCUGGCUGGGCCUCAGACC	chr19:15784228-15784526(+)$1	298	109	149	17.4071
AAGAGAGAGGCCGUGGGCGGCGAGCCGCGGGCGUUUACUC	chr6:160147791-160148076(-)$1	285	136	176	13.4491
GAGAUCAGAGGGUCGACGCUGCUUCGUUGCCUGGACUCUG	chr17:42148183-42148474(+)$1	291	63	103	16.9650
GAAGCUCCGCCCACGCGCCUUUAUGCGCAGGCUCUUCCUA	chr1:43232860-43233175(+)$1	315	43	83	15.7450
UAcagcggcugaagaggcaguggcgcccgcggccgcagcg	chr16:23521541-23521909(-)$1	368	123	163	16.6859
GCGGUUGCGGCGGCGACAGCCAUGGCCGGCGCGCUGGCAG	chr7:73038691-73038930(-)$1	239	87	127	14.2238
GAGAGGGGAUCUCUGCUGCUCCGACAGUUGAGCCCAGUUC	chr8:37962950-37963283(+)$1	333	248	288	20.4634
CCUCGCCGGUCUUGGGGGGAUGGUUCCAUCAUGGCGUCAA	chr8:74790874-74791175(-)$1	301	88	128	14.1614
AGGUGCUGAGCCGGCGGCCGGGGAGGGCUCGCGGGACUCC	chr18:12419878-12420195(+)$1	317	267	307	14.9766
CGCCCGGCGCGCCAGUGGGGAACGUCCGGACGCGGGCCGG	chr19:18632630-18632970(-)$1	340	253	293	14.7216
UGGCCGGAACGGGAGCCAACAUGGCAGCGGGGUUCGGGCG	chr1:76190339-76190622(+)$1	283	113	153	15.3077
GCCCAACGCGCAAGCGCGCGGCAUCGUggggcgggggugg	chr6:35888728-35888983(-)$1	255	4	44	14.2081
UCUUCUUUUGUUGGGGUCUGGGCAGGGGCCACAGCAAGUC	chr2:97405581-97405891(-)$1	310	200	240	14.9739
ugcggaccgagggggcggagccggccgccccggggUCCUC	chr15:64443828-64444143(+)$1	315	42	82	15.3559
UCUGUGCUGCUGCUGCAGGUGGUGCUGCUGCUGCGGUGAG	chr1:11866259-11866509(+)$1	250	80	120	17.9823
CAUGUGGAGCCGACGGCAGGGCCGCCUCAGGCCCACGGUC	chr5:140018940-140019325(+)$1	385	171	211	14.8766
GGCGGCGGUUGUCGCGGCGACGAGGUGGUGGCAGCUGUUG	chr16:88923103-88923455(-)$1	352	172	212	17.3760
CUCCUGCUGCUCCUCUCCUCUCGGggcggcggcggcgggg	chr10:74451805-74452159(+)$1	354	128	168	14.6083
AGCGCCGCGGAGUUUCGGGUCCGAGGAGCCUCGCGCGGCG	chr15:30114100-30114364(-)$1	264	78	118	14.0374
UUCACCCGGAGCGCUCGGGACUUGCCGAUAGUGGUGACGG	chr18:23670365-23670696(-)$1	331	116	156	18.6852
AAUUGGAGAAGGGGAACUGUGGAGUUGCUUAACAUUUCCA	chr12:7261611-7261916(-)$1	305	14	54	14.4875
AUGGCUGCCCCGUGUUUGCUGCGGCAAGGACGAGCCGGGG	chr21:44313307-44313600(+)$1	293	136	176	13.3003
gccgccgccgccgcGUCCCCUCGCCGGCUCGCUGGUACCG	chr1:94883916-94884161(+)$1	245	70	110	14.3709
GAGCGGGGCGCCUGGGUGGAUGGGCGCUUGGGCGCCUGGG	chr9:72873845-72874149(+)$1	304	59	99	18.1525
GGGCCGCAGGGCGACGAGGACCUGCUCGGGGUCCCGGACG	chr11:67771369-67771676(-)$1	307	205	245	18.0694

#DB
((((...((((((.((((......))))))))))..))))	chr19:58790250-58790601(+)$1	1	76	116	16.8131
((.((((.((((((((((......)))).)))))))))))	chr9:37800777-37801072(+)$1	1	84	124	16.9434
(((.(((.(.((.(((((......)))))))).)))))))	chr17:40729555-40729823(-)$1	1	190	230	16.7392
)).((((((((((((.((((....)))).)))..))))))	chr18:21017713-21018024(-)$1	1	113	153	13.4938
((.(((.((...(.((((......)))).)..)).)))))	chr2:242447765-242448089(-)$1	1	185	225	18.9379
(((..(((...(((((((......)))).)))))).))).	chr12:56211739-56212015(+)$1	1	120	160	20.0485
)))((((((((((((..((((...))))...)))))))))	chr9:131790320-131790607(-)$1	1	96	136	15.8494
.(((((.(((((((((((......))))...)))))))))	chr12:107168311-107168688(+)$1	1	206	246	18.2214
((.((.(((((((.((.(......).))))))))).))))	chr13:40229723-40230075(+)$1	1	88	128	14.4050
.(((...((((...((((......))))...)))).....	chr16:23652706-23653017(+)$1	1	64	104	15.1525
((((((((((.((.((((......)))).)).)))))..)	chr1:11866189-11866459(+)$1	1	150	190	17.9823
(((((.(((.((((((((......))))..)))).)))))	chr16:31519487-31519800(-)$1	1	131	171	17.5730
(..(((..(((((..(.(......))..))))))))..))	chr17:75277480-75277738(+)$1	1	89	129	14.7564
...(((((((((..((((......)))).)))))))))((	chr16:718019-718323(+)$1	1	133	173	17.0142
.(.(((...(((.(((((....).)))).))).))).).)	chr7:6048511-6048820(-)$1	1	128	168	16.1581
((.(.(((((((..((((......)))))))))))...).	chr16:67143884-67144233(+)$1	1	197	237	19.8225
.(...(((((((((((((......)))))))))))))...	chr9:127905613-127905874(-)$1	1	191	231	18.6129
)))))((((.((((((((......))))..)))).).)))	chr7:129710300-129710604(+)$1	1	174	214	18.0466
.(((((((..(((.((((......)))).))).)))))))	chr2:190656415-190656665(+)$1	1	83	123	20.8970
.(((((...(((..((((......))))..)))))))).)	chr8:21946595-21946916(+)$1	1	146	186	19.9075
..((((((...(((.(((......))))))))))))....	chr7:44084222-44084511(+)$1	1	115	155	15.8972
(((((.(((.(((.((((....))))..)))))).))).)	chr14:31091424-31091704(+)$1	1	165	205	13.9433
))(((.((((((..((((......)))).)))))).))).	chr2:85843210-85843474(+)$1	1	126	166	17.3541
((((.(((.(((..((((......))))))).)))...))	chr14:74769478-74769744(-)$1	1	210	250	19.8382
.((((.(((.((((..(((......))).)).))))).))	chr1:895885-896216(+)$1	1	173	213	14.2254
(((.(((....(((((((......)))))))))).)))))	chr11:93474504-93474760(-)$1	1	93	133	14.7311
.(((((.(((..(.((((......)))).)))).))))).	chr1:154600224-154600500(-)$1	1	57	97	19.6118
))..(((...(((.((((......)))).)))....))).	chr19:15784228-15784526(+)$1	1	109	149	17.4071
((((((((.(((...(((.....)))...))).))).)))	chr6:160147791-160148076(-)$1	1	136	176	13.4491
((((((((((((.(((((......)))))))....)))))	chr17:42148183-42148474(+)$1	1	63	103	16.9650
..(((((((((...((((......)))).)))((((((((	chr1:43232860-43233175(+)$1	1	43	83	15.7450
(...(((((((..(.(((......)))).)))))))))))	chr16:23521541-23521909(-)$1	1	123	163	16.6859
.((((.(((.((((.(......).)))).)))))))((((	chr7:73038691-73038930(-)$1	1	87	127	14.2238
(((..(((..(((.((((......)))).))))))..)))	chr8:37962950-37963283(+)$1	1	248	288	20.4634
(...((((....(((((......)))))...)))))))))	chr8:74790874-74791175(-)$1	1	88	128	14.1614
((((.(((((((.((((((......))).))).))....)	chr18:12419878-12420195(+)$1	1	267	307	14.9766
)))(((((.(((...((((.....))))...))).)))))	chr19:18632630-18632970(-)$1	1	253	293	14.7216
..(((....(.(..((((...))))..).)))))))))))	chr1:76190339-76190622(+)$1	1	113	153	15.3077
.((((.(.(((...(.((((....)))).)))).)..)))	chr6:35888728-35888983(-)$1	1	4	44	14.2081
.((((.(((((((.(((((......))))).)))))))..	chr2:97405581-97405891(-)$1	1	200	240	14.9739
((.(((((...(((((((......)))))))..))))).)	chr15:64443828-64444143(+)$1	1	42	82	15.3559
((((((((((.((.((((......)))).)).)))))..)	chr1:11866259-11866509(+)$1	1	80	120	17.9823
(..((((.(((((.(((......))))).)))))))))).	chr5:140018940-140019325(+)$1	1	171	211	14.8766
(((((((((((((((.((......)).)))))))))))))	chr16:88923103-88923455(-)$1	1	172	212	17.3760
(((((((((((((.((((....)))).)).))))))))))	chr10:74451805-74452159(+)$1	1	128	168	14.6083
((((((((((((((((........)))).))).)))))))	chr15:30114100-30114364(-)$1	1	78	118	14.0374
((((((....((..((((......))))..)))))))..)	chr18:23670365-23670696(-)$1	1	116	156	18.6852
..(((((((.(((.((((....)))).)))....))))))	chr12:7261611-7261916(-)$1	1	14	54	14.4875
.(((((....(((.(((((....))))).)))))))).))	chr21:44313307-44313600(+)$1	1	136	176	13.3003
((.((((..((((((..((......))..))).)))..))	chr1:94883916-94884161(+)$1	1	70	110	14.3709
.(((.(((((((((((((......)))))))))))))..)	chr9:72873845-72874149(+)$1	1	59	99	18.1525
((.((((.((((..((((......))))..))))..).))	chr11:67771369-67771676(-)$1	1	205	245	18.0694

#PSSM
[ : 0.17	g : 0.11	= : 0.11	c : 0.11	d : 0.11	e : 0.09	: : 0.05	! : 0.05	f : 0.05	i : 0.03	" : 0.03	K : 0.01	
e : 0.19	d : 0.17	g : 0.11	= : 0.11	c : 0.11	" : 0.07	! : 0.05	i : 0.03	a : 0.03	f : 0.03	: : 0.01	K : 0.01	
e : 0.19	[ : 0.15	c : 0.15	= : 0.09	d : 0.09	g : 0.07	: : 0.05	" : 0.05	! : 0.03	f : 0.03	i : 0.01	F : 0.01	
e : 0.23	c : 0.21	d : 0.13	= : 0.09	i : 0.05	" : 0.05	[ : 0.03	! : 0.03	g : 0.03	b : 0.01	a : 0.01	f : 0.01	: : 0.01	F : 0.01	
c : 0.23	e : 0.17	d : 0.15	= : 0.09	[ : 0.07	" : 0.05	i : 0.05	g : 0.05	! : 0.03	b : 0.01	f : 0.01	F : 0.01	
c : 0.23	e : 0.19	[ : 0.15	= : 0.13	d : 0.07	g : 0.07	" : 0.03	i : 0.03	f : 0.01	F : 0.01	# : 0.01	
c : 0.23	= : 0.13	g : 0.11	e : 0.09	" : 0.07	d : 0.07	[ : 0.05	# : 0.05	i : 0.03	f : 0.03	a : 0.03	! : 0.01	F : 0.01	
c : 0.19	= : 0.13	g : 0.13	[ : 0.09	e : 0.09	# : 0.07	f : 0.05	" : 0.05	i : 0.03	d : 0.03	! : 0.03	b : 0.01	F : 0.01	
c : 0.15	= : 0.13	" : 0.11	g : 0.11	# : 0.09	e : 0.07	f : 0.05	! : 0.05	[ : 0.05	a : 0.03	i : 0.03	d : 0.03	b : 0.01	
c : 0.21	[ : 0.13	= : 0.11	" : 0.09	g : 0.09	e : 0.07	# : 0.07	f : 0.05	i : 0.03	d : 0.03	! : 0.03	a : 0.01	
c : 0.30	b : 0.09	= : 0.09	g : 0.09	d : 0.09	" : 0.07	f : 0.05	[ : 0.05	i : 0.03	# : 0.03	e : 0.01	! : 0.01	
c : 0.28	b : 0.17	g : 0.11	" : 0.07	= : 0.07	d : 0.07	f : 0.05	i : 0.03	! : 0.03	e : 0.01	# : 0.01	a : 0.01	
c : 0.19	! : 0.17	g : 0.09	" : 0.09	b : 0.09	[ : 0.07	= : 0.07	d : 0.07	f : 0.03	a : 0.03	e : 0.03	
[ : 0.28	! : 0.17	c : 0.09	" : 0.09	d : 0.09	= : 0.07	e : 0.05	g : 0.05	f : 0.01	b : 0.01	a : 0.01	
d : 0.53	e : 0.09	c : 0.07	= : 0.07	[ : 0.05	! : 0.03	g : 0.03	" : 0.03	b : 0.01	a : 0.01	
d : 0.55	e : 0.09	c : 0.09	[ : 0.05	! : 0.05	a : 0.03	= : 0.03	g : 0.03	b : 0.01	
d : 0.57	c : 0.11	e : 0.09	! : 0.03	[ : 0.03	= : 0.03	g : 0.03	o : 0.01	b : 0.01	q : 0.01	
d : 0.57	c : 0.09	e : 0.07	a : 0.05	o : 0.05	= : 0.03	g : 0.03	b : 0.03	q : 0.01	
o : 0.69	d : 0.07	m : 0.07	c : 0.03	e : 0.03	n : 0.01	l : 0.01	q : 0.01	b : 0.01	
o : 0.76	m : 0.09	d : 0.05	n : 0.03	l : 0.01	q : 0.01	
o : 0.76	m : 0.13	n : 0.03	d : 0.01	l : 0.01	q : 0.01	
o : 0.76	m : 0.13	n : 0.03	l : 0.01	d : 0.01	q : 0.01	
o : 0.75	d : 0.07	m : 0.05	a : 0.03	n : 0.03	l : 0.01	q : 0.01	
o : 0.71	d : 0.07	m : 0.03	] : 0.03	c : 0.03	e : 0.03	l : 0.01	n : 0.01	q : 0.01	
d : 0.63	e : 0.07	c : 0.07	o : 0.07	a : 0.03	= : 0.03	g : 0.03	b : 0.01	
d : 0.61	c : 0.11	e : 0.09	= : 0.03	g : 0.03	b : 0.03	] : 0.01	a : 0.01	2 : 0.01	
d : 0.55	e : 0.09	c : 0.07	b : 0.05	2 : 0.05	] : 0.05	= : 0.03	g : 0.03	3 : 0.01	
d : 0.55	e : 0.09	c : 0.07	b : 0.05	2 : 0.05	= : 0.05	g : 0.03	a : 0.03	3 : 0.01	
] : 0.44	3 : 0.11	2 : 0.11	e : 0.07	g : 0.07	c : 0.07	= : 0.05	f : 0.01	b : 0.01	
c : 0.34	b : 0.09	3 : 0.09	g : 0.09	2 : 0.09	a : 0.07	f : 0.05	= : 0.05	e : 0.03	i : 0.01	] : 0.01	
c : 0.38	b : 0.11	3 : 0.09	g : 0.09	f : 0.07	= : 0.07	d : 0.05	2 : 0.01	e : 0.01	i : 0.01	] : 0.01	4 : 0.01	
c : 0.40	= : 0.09	g : 0.09	d : 0.09	f : 0.07	] : 0.07	2 : 0.03	4 : 0.03	a : 0.01	e : 0.01	i : 0.01	b : 0.01	
c : 0.19	] : 0.13	d : 0.13	= : 0.11	g : 0.09	e : 0.09	f : 0.07	4 : 0.05	2 : 0.03	b : 0.03	i : 0.01	
c : 0.21	= : 0.15	d : 0.13	g : 0.11	e : 0.11	f : 0.07	b : 0.05	4 : 0.05	] : 0.03	2 : 0.01	i : 0.01	
c : 0.17	= : 0.15	g : 0.13	e : 0.13	] : 0.11	d : 0.07	f : 0.05	2 : 0.03	i : 0.03	4 : 0.03	b : 0.01	a : 0.01	
c : 0.17	= : 0.17	e : 0.15	d : 0.09	g : 0.09	2 : 0.07	] : 0.05	i : 0.03	3 : 0.03	4 : 0.03	5 : 0.01	a : 0.01	f : 0.01	
= : 0.19	e : 0.17	c : 0.15	g : 0.07	2 : 0.07	d : 0.05	i : 0.05	] : 0.05	3 : 0.03	4 : 0.03	b : 0.01	5 : 0.01	f : 0.01	a : 0.01	
= : 0.15	c : 0.15	e : 0.11	2 : 0.11	g : 0.09	d : 0.07	i : 0.05	3 : 0.05	] : 0.05	4 : 0.03	b : 0.01	5 : 0.01	a : 0.01	f : 0.01	
= : 0.17	c : 0.15	e : 0.13	d : 0.13	2 : 0.09	] : 0.07	g : 0.05	i : 0.03	4 : 0.03	5 : 0.01	b : 0.01	a : 0.01	3 : 0.01	f : 0.01	
= : 0.17	c : 0.15	e : 0.13	d : 0.13	g : 0.11	i : 0.03	4 : 0.03	] : 0.03	: : 0.03	2 : 0.03	5 : 0.01	b : 0.01	3 : 0.01	D : 0.01	f : 0.01	

#score	857.5691324119039
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_UTR_m1_run1.txt

#BEAR
e!!ddddiiiiiiiii[aooooooa]iiiiiiiii333dd	chr9:137298995-137299255(+)$1	260	67	107	17.9152
ggggffffff####ddddoooooodddd4444ffffff]g	chr19:2426627-2426858(-)$1	231	60	100	14.7973
hhh[a[a[ccc[ccc[aooooooaccc]ccc]a]a]hhhh	chr17:75471279-75471535(+)$1	256	89	129	16.0696
ccc[ggggggg[eeeeeaooooooa]eeeeegggggggcc	chr17:77910978-77911207(-)$1	229	118	158	15.8680
bbiiiiiiiiiccc"""bbmmmmbb333ccc4444iiiii	chr1:33219493-33219748(+)$1	255	165	205	15.3140
%%iiiiiiiii!!eeeeeooooooeeeee4444iiiiiii	chr17:76794206-76794468(-)$1	262	147	187	15.9485
cca"""bba[dddd!!bboooooobb22dddd]a]bb333	chr17:80197752-80198019(+)$1	267	169	209	16.2062
g[ggggggg[===========lll===========]gggg	chr16:431725-432039(-)$1	314	250	290	16.5014
a!!ccc[gggggggddddoooooodddd333ggggggg]c	chr11:65339987-65340235(+)$1	248	155	195	16.7716
ff!!a[a[dddd!!cccooooooccc22dddd]a]a22ff	chr7:766821-767093(-)$1	272	98	138	15.2458
#a[dddd####ccc!!bboooooobbccc4444dddd]a=	chr6:7910200-7910486(-)$1	286	120	160	16.6141
]gggggggggggggg[bboooooobbggggggg:eeeee!	chr3:195619392-195619627(-)$1	235	119	159	15.2712
ccc[adddd"""ccc!!ccclllccc]ccc333dddd]a2	chr19:1881743-1882053(-)$1	310	232	272	13.4357
==========####ddddbbmmmmbb]dddd333======	chr11:706030-706297(-)$1	267	64	104	14.5550
ffffff[a[ggggggg[ccclllccc22ggggggg]a]ff	chr7:148580487-148580736(-)$1	249	138	178	13.5257
$$$$$==========[cccmmmmccc]==========444	chr1:116916551-116916870(+)$1	319	104	144	15.4701
!!dddd[bb!!dddd[bboooooobbdddd22bb]dddd]	chr3:48470670-48470896(-)$1	226	125	165	14.2967
iiiiiiii!!a!!ddddnnnnndddd22a]iiiiiiiiiD	chr19:1104352-1104614(+)$1	262	203	243	13.0270
lccciiiiiiiii"""bboooooobb4444iiiiiiiiiB	chr8:142010903-142011156(-)$1	253	8	48	18.1290
ffff"""ccc!!a[ddddoooooodddd]a]ccc333fff	chr17:75315856-75316099(+)$1	243	117	157	15.8760
ff"""ccc[ccc[bbrrrrrrrrrbb]ccc]ccc333fff	chr7:1581893-1582120(+)$1	227	15	55	12.7166
dddd:===========!!aooooooa22===========:	chr19:18653851-18654113(-)$1	262	64	104	16.8932
iiiiiiii!!a!!ddddnnnnndddd22a]iiiiiiiiiD	chr19:1104414-1104664(+)$1	250	141	181	13.0270
eeeee!!ccc[bb"""bboooooobb22bb]ccc4444ee	chr1:155947858-155948102(-)$1	244	63	103	16.3359
b!!ccc[===========mmmm===========]ccc333	chr7:66205574-66205837(+)$1	263	218	258	15.7308
ggg!!eeeeea[ccc[cccmmmmccc]ccc]a333eeeee	chr17:41623460-41623718(+)$1	258	17	57	13.4227
####ccc####ccc"""bbmmmmbb333ccc4444ccc33	chr19:1472451-1472705(-)$1	254	62	102	14.8953
eee[a!!ggggggg[cccooooooccc]ggggggg22a]e	chr18:46065890-46066140(+)$1	250	66	106	17.1392
g[ggggggg[a[bb[cccooooooccc]bb]a22gggggg	chr19:18547585-18547860(-)$1	275	127	167	17.1704
b!!iiiiiiiii!!a[bboooooobba4444iiiiiiiii	chr16:2580813-2581059(+)$1	246	129	169	19.6049
eeffffff"""bba[cccooooooccc]a]bb]ffffffd	chr11:46383001-46383264(+)$1	263	174	214	14.7000
b"""ffffff[ccc[cccooooooccc]ccc4444fffff	chr14:103574589-103574843(+)$1	254	147	187	16.4887
:ccc[===========[ammmma]===========]ccc:	chr1:6673917-6674205(-)$1	288	132	172	14.3837
b[ggggggg!!dddd!!aooooooa22dddd333gggggg	chr19:892271-892517(-)$1	246	5	45	17.7959
[ffffff!!dddd"""bboooooobb333dddd22fffff	chr3:171904981-171905238(+)$1	257	9	49	15.4620
c22ddddiiiiiiiii[aooooooaiiiiiiiiiddddnn	chr14:104164476-104164764(+)$1	288	131	171	14.4563
[a[a[a[iiiiiiiiirrrrrrrrriiiiiiiii]a]aa]	chr17:75452354-75452619(+)$1	265	13	53	14.7577
cc[bbggggggg####bboooooobb333ggggggg]bb]	chr5:138089177-138089520(+)$1	343	285	325	17.5577
hhhh"""bb!!ccc[cccooooooccc]ccc]bb]hhhhh	chr3:185826155-185826426(-)$1	271	108	148	15.9267
!!eeeee####ccc!!cccmmmmccc22ccc333eeeee2	chr19:1473139-1473357(-)$1	218	73	113	14.1741
dddd"""bb####eeeeeooooooeeeee333bbdddd]a	chr17:79826164-79826421(+)$1	257	74	114	13.8820
eee[iiiiiiiii[bb####ammmma22bbiiiiiiiii]	chr19:47507350-47507595(+)$1	245	28	68	13.5734
===============[bboooooobb22============	chr12:66217937-66218222(-)$1	285	10	50	20.9495
fff[iiiiiiiii[a!!bbnnnnnbb22a22iiiiiiiii	chr19:42788673-42788950(+)$1	277	39	79	15.6476
hhhh[a[a[ccc[ccc[aooooooaccc]ccc]a]a]hhh	chr17:75471243-75471479(+)$1	236	124	164	16.7338
ff####bb!!gggggggaooooooa]ggggggg4444bb5	chr8:144679299-144679567(-)$1	268	69	109	15.5287
:iiiiiiiii"""bbcccooooooccc]bb333iiiiiii	chr2:242254621-242254890(-)$1	269	118	158	17.8323
e[eeeee!!ccc[ccc[aooooooa]ccc]ccc22eeeee	chr17:7211164-7211440(+)$1	276	138	178	15.7688
ccca[==========[annnnna]==========]a]ccc	chr6:41700853-41701104(-)$1	251	166	206	15.7775
e[ccc!!a[dddd[ddddoooooodddd]dddd]a22ccc	chr2:242513321-242513566(+)$1	245	102	142	14.2891

#otherMatches

#Seq PSSM
AAACUCUUCCUGUCCCGUGAGAAGGGGGGAUGGGAUUUGG	chr9:137298995-137299255(+)$1	260	67	107	17.9152
CUGCCCCCUGCCAGCCAGUGCAGCUUGGAUCUCGGGGGUG	chr19:2426627-2426858(-)$1	231	60	100	14.7973
UGUGUGGGAGCGGGGAGGGCAAGCCCUGGUUGCGAGGCAG	chr17:75471279-75471535(+)$1	256	89	129	16.0696
AGGUGGGGUGGUGCUUCCGUUCCUGUGAGGCCCGCCCCCC	chr17:77910978-77911207(-)$1	229	118	158	15.8680
CUUGGGUUCCCGCGCCGGCUCCCGCACCCGCAAUGGGGAA	chr1:33219493-33219748(+)$1	255	165	205	15.3140
uguguguCCUAGUCACUUGGAGAAGGgugugugugggaug	chr17:76794206-76794468(-)$1	262	147	187	15.9485
GCCAUGUCCCUGCUCCUCUGCAAUGAAAAGCAAGCGAAAA	chr17:80197752-80198019(+)$1	267	169	209	16.2062
ggcgguggccgcggugguggcggggccgCUGCUGCUGCUG	chr16:431725-432039(-)$1	314	250	290	16.5014
GAACGGGCUGCCCUCGGCAGAGGCGCCGGGCGGGGCGGGC	chr11:65339987-65340235(+)$1	248	155	195	16.7716
agagugugggguggcgugugggagcggggcccggggUGCU	chr7:766821-767093(-)$1	272	98	138	15.2458
AGGGGGCGGACCCCUAGGGGACAGCCGGGAAAAGCCCGCC	chr6:7910200-7910486(-)$1	286	120	160	16.6141
CUUGCAGCAGAGCGGAGGGGCCCACCCCGUUCUUCCUCAU	chr3:195619392-195619627(-)$1	235	119	159	15.2712
GUCACUGUUCCCCCGCAGGGCUUCCCACGGCACGACAUGG	chr19:1881743-1882053(-)$1	310	232	272	13.4357
UCUGUUCGCGCCUCGGCCGGGGCGCCAGGUCUCCCGCGGG	chr11:706030-706297(-)$1	267	64	104	14.5550
GACGUUCGCGGCGGGGAACUCGGAGUAGCUUCGCCUCUGA	chr7:148580487-148580736(-)$1	249	138	178	13.5257
CCUCCGUUCCCGCCGCGGCCCCGGUUCCGGCGGGGGCAGC	chr1:116916551-116916870(+)$1	319	104	144	15.4701
AACAGCUGCGGCUCCACCAGACCCGGGGAGAGGCCGCUGC	chr3:48470670-48470896(-)$1	226	125	165	14.2967
GGGGCGCGGAGGGCUGGAAAUCCCGGAUCAcgcgcccccg	chr19:1104352-1104614(+)$1	262	203	243	13.0270
GGCCGCGGCCCUGAGGGCGGAGGGGCAGAGCGGGGCCGCC	chr8:142010903-142011156(-)$1	253	8	48	18.1290
AGGUGGAGAGAGGAGGCUGCCGGAAGCCGCACUCGGGACC	chr17:75315856-75316099(+)$1	243	117	157	15.8760
UUUUCGUAACAAUCUUUCUUUUCCAGUUUGAUACUGUAAA	chr7:1581893-1582120(+)$1	227	15	55	12.7166
GGCCAGGGGCGCCCGAGGCGUGCGGGGGUCGGGUGCCCCA	chr19:18653851-18654113(-)$1	262	64	104	16.8932
GGGGCGCGGAGGGCUGGAAAUCCCGGAUCAcgcgcccccg	chr19:1104414-1104664(+)$1	250	141	181	13.0270
gcgguggaucggcgagcggcgggacgggguggguggggac	chr1:155947858-155948102(-)$1	244	63	103	16.3359
GGACUGGGGCUGAGAGCUGCUCGGCUCUCAGCUACAGGAG	chr7:66205574-66205837(+)$1	263	218	258	15.7308
GUGAGUGUGGUGUGCAUUGGAGGCGAGGCGGGGAAUCACA	chr17:41623460-41623718(+)$1	258	17	57	13.4227
GGCAGGGGAUGGAGAAGGCGAAAGUGAGCUCAGGACUCGG	chr19:1472451-1472705(-)$1	254	62	102	14.8953
CCCGCGGGGUGUCGUGGCCCUGGAGCUCCGGCGCCAAGGG	chr18:46065890-46066140(+)$1	250	66	106	17.1392
GAGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUCC	chr19:18547585-18547860(-)$1	275	127	167	17.1704
UGGGCCUGGGAGAGGAGCUGUCUUGCCAGGGCUCCCAGGC	chr16:2580813-2581059(+)$1	246	129	169	19.6049
AGAGGCCGCCAGCCCGGAGCUGGAUCCAGAGCCCGGCCUU	chr11:46383001-46383264(+)$1	263	174	214	14.7000
CCGAGGCCACAUGGUUGGACCAAGCCAUCCAGUGCGUGGC	chr14:103574589-103574843(+)$1	254	147	187	16.4887
agcggggccgcccggggcugggggcucgggcggcugcgca	chr1:6673917-6674205(-)$1	288	132	172	14.3837
CUCGUAUUUGGGGGCAAUAGGGGAAGGGCCUGGAGAGUAC	chr19:892271-892517(-)$1	246	5	45	17.7959
UCAUUUUAAAAAAUCAACUGUAUUGUACUUUUUAAAAAAU	chr3:171904981-171905238(+)$1	257	9	49	15.4620
GACCCAGAGGUGGGUGAGGAGGAGCCGCCUGCCUGCAGCC	chr14:104164476-104164764(+)$1	288	131	171	14.4563
UGCAGGGACGCCACACGAGGAGCAGGUGUGGUGUGCGUCC	chr17:75452354-75452619(+)$1	265	13	53	14.7577
GCCGCCUGGGCUGGGGAGGAGAAACUAUAGGCCCAGCGCC	chr5:138089177-138089520(+)$1	343	285	325	17.5577
GCGGGAAGCAGUUUGAGGGGAAUGUCUGAGAGGCGCUGCC	chr3:185826155-185826426(-)$1	271	108	148	15.9267
ACCCGCCCACAGCCCAUUUUGAGGAAGAGGUGAUGGCGGC	chr19:1473139-1473357(-)$1	218	73	113	14.1741
UGUUAAGGCAUCAUGGUUAGACGGGACCGACAGCGACAAG	chr17:79826164-79826421(+)$1	257	74	114	13.8820
CGCUGCUUUCCCGAGGGCAGCGCAGGGAUCCGGGGAAGCU	chr19:47507350-47507595(+)$1	245	28	68	13.5734
agugugaguguguguggugugugugcgugCACGCGCUUGC	chr12:66217937-66218222(-)$1	285	10	50	20.9495
gggcggcgggggggggggcAUGCGGCGACGGCCUCCCGCU	chr19:42788673-42788950(+)$1	277	39	79	15.6476
CUGUGUGGGAGCGGGGAGGGCAAGCCCUGGUUGCGAGGCA	chr17:75471243-75471479(+)$1	236	124	164	16.7338
CCGGAAGGAGUCGGGCGCGACAGAGACGCCCGAGGGGCCG	chr8:144679299-144679567(-)$1	268	69	109	15.5287
ACUGGGCGGGGGACGGCGAGCGGCCGCGCGAAACUCGUCU	chr2:242254621-242254890(-)$1	269	118	158	17.8323
GAGCCGCGAGGCAGCCACGCGGGAGAGGCCGCCAGGCGGC	chr17:7211164-7211440(+)$1	276	138	178	15.7688
CCUCAGCCUGUUUCUGGAAAGCUGAGAAGUAGGUGGAAGG	chr6:41700853-41701104(-)$1	251	166	206	15.7775
UGGGCCAUGUGCCAGGACAGGAGGGUCCCGGCGGAAAGCC	chr2:242513321-242513566(+)$1	245	102	142	14.2891

#DB
(..(((((((((((((.(......).)))))))))...))	chr9:137298995-137299255(+)$1	1	67	107	17.9152
((((((((((....((((......))))....)))))).)	chr19:2426627-2426858(-)$1	1	60	100	14.7973
(((.(.(.(((.(((.(......)))).))).).).))))	chr17:75471279-75471535(+)$1	1	89	129	16.0696
(((.(((((((.((((((......).))))))))))))))	chr17:77910978-77911207(-)$1	1	118	158	15.8680
((((((((((((((...((....))...)))....)))))	chr1:33219493-33219748(+)$1	1	165	205	15.3140
..(((((((((..(((((......)))))....)))))))	chr17:76794206-76794468(-)$1	1	147	187	15.9485
(((...(((.((((..((......))..)))).).))...	chr17:80197752-80198019(+)$1	1	169	209	16.2062
(.(((((((.(((((((((((...))))))))))).))))	chr16:431725-432039(-)$1	1	250	290	16.5014
(..(((.(((((((((((......))))...))))))).)	chr11:65339987-65340235(+)$1	1	155	195	16.7716
((..(.(.((((..(((......)))..)))).).)..))	chr7:766821-767093(-)$1	1	98	138	15.2458
.(.((((....(((..((......)))))....)))).))	chr6:7910200-7910486(-)$1	1	120	160	16.6141
.)))))))(((((((.((......))))))))).(((((.	chr3:195619392-195619627(-)$1	1	119	159	15.2712
(((.(((((...(((..(((...))).)))...)))).).	chr19:1881743-1882053(-)$1	1	232	272	13.4357
((((((((((....((((((....)).))))...))))))	chr11:706030-706297(-)$1	1	64	104	14.5550
((((((.(.(((((((.(((...)))..))))))).).))	chr7:148580487-148580736(-)$1	1	138	178	13.5257
.....((((((((((.(((....))).))))))))))...	chr1:116916551-116916870(+)$1	1	104	144	15.4701
..((((.((..((((.((......))))))..)).)))).	chr3:48470670-48470896(-)$1	1	125	165	14.2967
((((((((..(..((((.....))))..).))))))))))	chr19:1104352-1104614(+)$1	1	203	243	13.0270
.)))(((((((((...((......))....)))))))))(	chr8:142010903-142011156(-)$1	1	8	48	18.1290
((((...(((..(.((((......)))).).)))...)))	chr17:75315856-75316099(+)$1	1	117	157	15.8760
((...(((.(((.((.........)).))).)))...)))	chr7:1581893-1582120(+)$1	1	15	55	12.7166
)))).(((((((((((..(......)..))))))))))).	chr19:18653851-18654113(-)$1	1	64	104	16.8932
((((((((..(..((((.....))))..).))))))))))	chr19:1104414-1104664(+)$1	1	141	181	13.0270
(((((..(((.((...((......))..)).)))....))	chr1:155947858-155948102(-)$1	1	63	103	16.3359
(..(((.(((((((((((....))))))))))).)))...	chr7:66205574-66205837(+)$1	1	218	258	15.7308
(((..((((((.(((.(((....))).))).)...)))))	chr17:41623460-41623718(+)$1	1	17	57	13.4227
....(((....(((...((....))...)))....)))..	chr19:1472451-1472705(-)$1	1	62	102	14.8953
(((.(..(((((((.(((......))).)))))))..).)	chr18:46065890-46066140(+)$1	1	66	106	17.1392
(.(((((((.(.((.(((......))).)).)..))))))	chr19:18547585-18547860(-)$1	1	127	167	17.1704
(..(((((((((..(.((......)))....)))))))))	chr16:2580813-2581059(+)$1	1	129	169	19.6049
))((((((...(((.(((......))).).)).))))))(	chr11:46383001-46383264(+)$1	1	174	214	14.7000
(...((((((.(((.(((......))).)))....)))))	chr14:103574589-103574843(+)$1	1	147	187	16.4887
.(((.(((((((((((.(....).))))))))))).))).	chr1:6673917-6674205(-)$1	1	132	172	14.3837
(.(((((((..((((..(......)..))))...))))))	chr19:892271-892517(-)$1	1	5	45	17.7959
.((((((..((((...((......))...))))..)))))	chr3:171904981-171905238(+)$1	1	9	49	15.4620
)..))))(((((((((.(......))))))))))((((..	chr14:104164476-104164764(+)$1	1	131	171	14.4563
.(.(.(.(((((((((.........))))))))).).)).	chr17:75452354-75452619(+)$1	1	13	53	14.7577
((.(((((((((....((......))...))))))).)).	chr5:138089177-138089520(+)$1	1	285	325	17.5577
((((...((..(((.(((......))).))).)).)))))	chr3:185826155-185826426(-)$1	1	108	148	15.9267
..(((((....(((..(((....)))..)))...))))).	chr19:1473139-1473357(-)$1	1	73	113	14.1741
((((...((....(((((......)))))...)))))).)	chr17:79826164-79826421(+)$1	1	74	114	13.8820
(((.(((((((((.((....(....)..))))))))))).	chr19:47507350-47507595(+)$1	1	28	68	13.5734
(((((((((((((((.((......))..))))))))))))	chr12:66217937-66218222(-)$1	1	10	50	20.9495
(((.(((((((((.(..((.....))..)..)))))))))	chr19:42788673-42788950(+)$1	1	39	79	15.6476
((((.(.(.(((.(((.(......)))).))).).).)))	chr17:75471243-75471479(+)$1	1	124	164	16.7338
((....((..((((((((......).)))))))....)).	chr8:144679299-144679567(-)$1	1	69	109	15.5287
.(((((((((...(((((......))).))...)))))))	chr2:242254621-242254890(-)$1	1	118	158	17.8323
(.(((((..(((.(((.(......).))).)))..)))))	chr17:7211164-7211440(+)$1	1	138	178	15.7688
((((.((((((((((.(.....).)))))))))).).)))	chr6:41700853-41701104(-)$1	1	166	206	15.7775
(.(((..(.((((.((((......)))).)))).)..)))	chr2:242513321-242513566(+)$1	1	102	142	14.2891

#PSSM
e : 0.14	c : 0.12	f : 0.12	b : 0.10	g : 0.08	h : 0.06	# : 0.04	= : 0.04	! : 0.04	i : 0.04	d : 0.04	: : 0.04	[ : 0.04	% : 0.02	a : 0.02	] : 0.02	$ : 0.02	l : 0.02	
c : 0.14	f : 0.14	! : 0.12	[ : 0.10	e : 0.08	g : 0.06	h : 0.06	i : 0.06	a : 0.04	= : 0.04	d : 0.04	b : 0.02	% : 0.02	$ : 0.02	# : 0.02	" : 0.02	2 : 0.02	
g : 0.12	c : 0.12	! : 0.10	i : 0.10	f : 0.10	e : 0.10	h : 0.06	[ : 0.06	d : 0.06	= : 0.04	" : 0.04	# : 0.04	a : 0.02	$ : 0.02	2 : 0.02	
d : 0.12	[ : 0.12	i : 0.12	g : 0.10	c : 0.10	f : 0.08	" : 0.06	e : 0.06	! : 0.04	= : 0.04	# : 0.04	a : 0.04	h : 0.04	$ : 0.02	b : 0.02	
i : 0.18	f : 0.10	g : 0.10	" : 0.10	d : 0.08	a : 0.08	c : 0.08	[ : 0.08	e : 0.06	= : 0.04	$ : 0.02	: : 0.02	! : 0.02	b : 0.02	# : 0.02	
i : 0.18	g : 0.12	= : 0.12	d : 0.10	f : 0.10	" : 0.08	c : 0.08	! : 0.06	e : 0.06	[ : 0.04	a : 0.04	# : 0.02	
i : 0.18	g : 0.12	[ : 0.12	= : 0.12	d : 0.08	f : 0.08	" : 0.06	! : 0.06	e : 0.06	a : 0.04	b : 0.04	c : 0.04	
i : 0.23	g : 0.16	= : 0.14	b : 0.10	f : 0.06	# : 0.06	a : 0.06	c : 0.06	[ : 0.04	! : 0.04	d : 0.02	e : 0.02	
i : 0.19	g : 0.16	= : 0.14	! : 0.10	[ : 0.08	c : 0.06	# : 0.06	b : 0.06	f : 0.04	d : 0.04	a : 0.02	e : 0.02	" : 0.02	
i : 0.19	= : 0.14	c : 0.12	g : 0.12	! : 0.12	# : 0.08	[ : 0.06	d : 0.06	f : 0.04	" : 0.04	e : 0.02	
i : 0.18	g : 0.14	= : 0.14	# : 0.12	c : 0.08	d : 0.08	! : 0.08	a : 0.08	" : 0.06	[ : 0.04	
c : 0.18	i : 0.14	= : 0.14	d : 0.12	g : 0.12	[ : 0.08	! : 0.08	# : 0.06	" : 0.04	b : 0.04	
c : 0.18	= : 0.14	i : 0.12	! : 0.10	d : 0.10	g : 0.10	# : 0.08	[ : 0.06	b : 0.06	e : 0.02	a : 0.02	" : 0.02	
c : 0.21	= : 0.14	d : 0.10	g : 0.10	[ : 0.08	i : 0.06	# : 0.06	e : 0.06	" : 0.06	b : 0.06	! : 0.04	a : 0.02	
d : 0.18	= : 0.14	c : 0.12	" : 0.10	[ : 0.10	i : 0.06	e : 0.06	! : 0.06	g : 0.06	b : 0.06	a : 0.04	# : 0.02	
c : 0.18	[ : 0.16	d : 0.14	! : 0.12	" : 0.10	= : 0.08	i : 0.06	e : 0.06	g : 0.04	r : 0.02	# : 0.02	b : 0.02	
b : 0.19	c : 0.19	d : 0.14	[ : 0.12	! : 0.08	e : 0.06	a : 0.04	" : 0.04	= : 0.04	r : 0.04	# : 0.02	g : 0.02	
b : 0.25	c : 0.21	a : 0.16	d : 0.10	n : 0.06	o : 0.04	e : 0.04	= : 0.04	r : 0.04	! : 0.02	# : 0.02	
o : 0.62	c : 0.10	b : 0.08	n : 0.06	r : 0.04	m : 0.04	= : 0.02	a : 0.02	# : 0.02	
o : 0.64	m : 0.14	n : 0.08	c : 0.04	r : 0.04	= : 0.02	b : 0.02	# : 0.02	
o : 0.64	m : 0.16	n : 0.08	l : 0.04	r : 0.04	= : 0.02	a : 0.02	
o : 0.64	m : 0.18	n : 0.08	l : 0.06	r : 0.04	
o : 0.64	m : 0.14	l : 0.06	d : 0.04	r : 0.04	a : 0.04	= : 0.02	n : 0.02	
o : 0.60	c : 0.12	b : 0.04	m : 0.04	d : 0.04	r : 0.04	] : 0.04	a : 0.02	l : 0.02	= : 0.02	n : 0.02	
b : 0.30	c : 0.25	a : 0.14	d : 0.12	= : 0.08	e : 0.04	o : 0.02	r : 0.02	m : 0.02	
c : 0.27	b : 0.25	d : 0.12	] : 0.08	= : 0.08	3 : 0.04	e : 0.04	a : 0.04	i : 0.04	2 : 0.02	
2 : 0.23	c : 0.19	d : 0.10	] : 0.10	3 : 0.08	= : 0.08	i : 0.06	e : 0.06	g : 0.04	4 : 0.02	a : 0.02	
2 : 0.21	d : 0.14	] : 0.14	c : 0.12	= : 0.10	3 : 0.08	i : 0.06	e : 0.06	g : 0.04	4 : 0.04	
c : 0.21	= : 0.14	d : 0.10	g : 0.08	a : 0.08	b : 0.08	i : 0.06	4 : 0.06	e : 0.06	3 : 0.06	] : 0.06	
c : 0.19	d : 0.14	= : 0.14	4 : 0.10	g : 0.10	] : 0.08	b : 0.08	i : 0.06	3 : 0.04	e : 0.02	a : 0.02	2 : 0.02	
c : 0.16	i : 0.14	= : 0.14	d : 0.12	g : 0.10	] : 0.10	4 : 0.08	3 : 0.08	2 : 0.04	e : 0.02	b : 0.02	
i : 0.18	g : 0.14	= : 0.14	4 : 0.12	3 : 0.12	c : 0.10	d : 0.08	] : 0.04	a : 0.04	2 : 0.02	b : 0.02	
i : 0.18	g : 0.14	= : 0.14	3 : 0.12	4 : 0.10	] : 0.08	c : 0.08	b : 0.06	d : 0.04	f : 0.02	a : 0.02	2 : 0.02	
i : 0.21	= : 0.12	g : 0.10	4 : 0.08	3 : 0.08	] : 0.06	a : 0.06	b : 0.06	c : 0.06	2 : 0.06	f : 0.04	d : 0.04	: : 0.02	
i : 0.18	g : 0.14	] : 0.14	= : 0.12	4 : 0.10	d : 0.08	3 : 0.06	f : 0.04	a : 0.04	e : 0.04	2 : 0.04	c : 0.02	
i : 0.18	g : 0.10	d : 0.10	f : 0.08	] : 0.08	a : 0.08	e : 0.08	= : 0.08	3 : 0.06	4 : 0.04	c : 0.04	2 : 0.04	b : 0.02	h : 0.02	
i : 0.18	g : 0.10	d : 0.10	f : 0.08	e : 0.08	= : 0.08	] : 0.08	3 : 0.06	2 : 0.06	c : 0.06	h : 0.04	4 : 0.04	b : 0.02	a : 0.02	
i : 0.18	f : 0.12	g : 0.10	e : 0.08	c : 0.08	3 : 0.06	h : 0.06	] : 0.06	= : 0.06	d : 0.06	4 : 0.04	a : 0.04	b : 0.04	2 : 0.02	
i : 0.18	f : 0.14	e : 0.10	] : 0.08	c : 0.08	h : 0.06	3 : 0.06	g : 0.06	a : 0.06	= : 0.06	d : 0.04	b : 0.04	4 : 0.02	n : 0.02	
f : 0.12	i : 0.10	g : 0.08	c : 0.08	] : 0.08	e : 0.08	h : 0.06	3 : 0.06	= : 0.06	d : 0.04	2 : 0.04	D : 0.04	: : 0.04	! : 0.02	4 : 0.02	B : 0.02	n : 0.02	a : 0.02	5 : 0.02	

#score	783.4621681781342
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_transcript_m1_run2.txt

#BEAR
[ddddgggggggbbrrrrrrrrrbb]ggggggg22dddd	chr17:64441830-64442089(+)$1	259	148	187	22.5994
!============[bbpppppppbb============66	chrX:133036597-133036823(-)$1	226	103	142	21.2108
""dddd[cccffffffpppppppffffff22ccc]dddd	chr3:136212352-136212603(-)$1	251	132	171	18.3913
hddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddd	chr1:1775680-1775935(-)$1	255	135	174	29.2366
dddd!!ggggggg[bbpppppppbb22gggggggdddd2	chr3:176901184-176901407(-)$1	223	23	62	24.1472
!dddd[ggggggg[bbpppppppbbggggggg55555dd	chr7:23486031-23486282(-)$1	251	136	175	22.4595
ccc!!eeeee"""cccpppppppccc333eeeee333cc	chr17:80487179-80487430(+)$1	251	7	46	16.8370
eeeeehhhhhhhh[bbpppppppbbhhhhhhhh22eeee	chr14:21713549-21713759(-)$1	210	133	172	28.5260
dddd[a[ggggggg[apppppppa]ggggggg]a22ddd	chr17:19556271-19556528(+)$1	257	134	173	22.8719
ggggggggggggg[bbpppppppbbggggggg22ggggg	chr1:21070045-21070256(-)$1	211	132	171	24.4043
!ddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddd	chr5:179253079-179253335(+)$1	256	132	171	29.6978
[eeeeeggggggg[bbpppppppbbggggggg]eeeee]	chrX:133050063-133050276(-)$1	213	134	173	24.9145
eeeeedddddddd[bbpppppppbbdddd]dddd22eee	chr2:96855294-96855551(-)$1	257	137	176	19.9359
eeee[ccceeeee[bbpppppppbbeeeee22ccceeee	chr7:48003353-48003605(-)$1	252	132	171	20.6816
eeee[hhhhhhhh[bbpppppppbbhhhhhhhh333eee	chr2:42492144-42492415(+)$1	271	133	172	28.0793
eeeeehhhhhhhh[bbpppppppbbhhhhhhhh22eeee	chr20:34235845-34236092(-)$1	247	135	174	28.5260
====!!ccc!!eeeeepppppppeeeee22ccc]=====	chr12:102136974-102137272(+)$1	298	169	208	17.0323
[ddddgggggggbbrrrrrrrrrbb]ggggggg22dddd	chr20:5992145-5992396(+)$1	251	133	172	22.5994
eeeee!!ffffff[bbpppppppbbffffff4444eeee	chr3:24530571-24530837(-)$1	266	134	173	20.9619
[ddddgggggggbbrrrrrrrrrbb]ggggggg22dddd	chr6:13627707-13627971(-)$1	264	139	178	22.5994
eeeeehhhhhhhh[bbpppppppbbhhhhhhhh22eeee	chr5:157241879-157242147(-)$1	268	136	175	28.5260
fffiiiiiiiii[cccpppppppccciiiiiiiiiffff	chr3:172064404-172064659(+)$1	255	30	69	19.9089
!bbbbhhhhhhhh[bbpppppppbbhhhhhhhh4444bb	chr19:9780582-9780844(-)$1	262	136	175	24.8874
[eeeeeggggggg[bbpppppppbbggggggg22eeeee	chr3:171879683-171879923(+)$1	240	130	169	25.8958
[ccc[gggggggbbrrrrrrrrrbb]ggggggg333ccc	chr1:17742038-17742311(-)$1	273	135	174	20.4605
[ddddgggggggcccpppppppccc]ggggggg22dddd	chr5:59620299-59620569(-)$1	270	134	173	22.3642
[ddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddd	chr8:121640814-121641102(-)$1	288	136	175	29.8063
ddddeeeee!!cccrrrrrrrrrccc22eeeee22dddd	chr3:120354972-120355231(-)$1	259	134	173	17.4397
fffff]cccgggggggpppppppggggggg=========	chr2:39975973-39976228(-)$1	255	61	100	19.0610
[ddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddd	chr7:27849428-27849682(+)$1	254	145	184	29.8063
eeeeehhhhhhhh[bbpppppppbbhhhhhhhh22eeee	chr20:62544677-62544912(+)$1	235	119	158	28.5260
[ddddgggggggbbrrrrrrrrrbb]ggggggg22dddd	chr3:11834387-11834625(-)$1	238	120	159	22.5994
[cccbbgggggggcccpppppppccc]ggggggg]bb]c	chr3:171769788-171769995(+)$1	207	132	171	20.1226
cddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddd	chr1:76256265-76256474(+)$1	209	145	184	29.2673
!ddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddd	chr6:144674162-144674410(+)$1	248	135	174	29.6978
eeeeehhhhhhhh[bbpppppppbbhhhhhhhh22eeee	chr20:32857910-32858150(-)$1	240	122	161	28.5260
[ddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddd	chr12:1828754-1829006(+)$1	252	133	172	29.8063
[ddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddd	chr8:71222434-71222686(-)$1	252	137	176	29.8063
[eeeeeggggggg[bbpppppppbbggggggg]eeeee]	chrX:131539742-131539997(-)$1	255	122	161	24.9145
ddd[ddddhhhhhhhhppppppphhhhhhhh4444dddd	chr6:119667116-119667360(-)$1	244	121	160	21.7522
[ddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddd	chr3:171968518-171968780(+)$1	262	135	174	29.8063
F:dddd[iiiiiiiiipppppppiiiiiiiii]dddddd	chr1:6607749-6608012(-)$1	263	79	118	20.4837
[ddddffffffcccrrrrrrrrrccc]ffffff22dddd	chr10:103548031-103548264(-)$1	233	98	137	17.2491
!!ccchhhhhhhh[bbpppppppbbhhhhhhhh22ccc]	chr16:58636312-58636565(-)$1	253	138	177	27.6678
[ddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddd	chr14:23534597-23534849(-)$1	252	83	122	29.8063
eeeee!!eeeee!!bbpppppppbb]eeeee4444eeee	chr7:105372389-105372646(-)$1	257	137	176	21.9803

#otherMatches

#Seq PSSM
uggagugcaguggcaugaucuuggcucacugcaaccucu	chr17:64441830-64442089(+)$1	259	148	187	22.5994
uggguugcaguggugcaaucuuggcucacuguaaccucu	chrX:133036597-133036823(-)$1	226	103	142	21.2108
aagcuggagugcagugucaugaucauugcucacugcagc	chr3:136212352-136212603(-)$1	251	132	171	18.3913
uggagugcagugaugcaaucuuggcucacugcaaccucc	chr1:1775680-1775935(-)$1	255	135	174	29.2366
ggagguugcagugagccaaaaucgcaccacugcacucca	chr3:176901184-176901407(-)$1	223	23	62	24.1472
agcagugcaguggugcgaucucggcucacugccaccucu	chr7:23486031-23486282(-)$1	251	136	175	22.4595
cucccggguucaagcgauucuccugccucagccuccuga	chr17:80487179-80487430(+)$1	251	7	46	16.8370
uggagugcaguggugcgaucucagcccacugcaaccucc	chr14:21713549-21713759(-)$1	210	133	172	28.5260
guagugcuguggugugaucucggcucacugcaaccuuug	chr17:19556271-19556528(+)$1	257	134	173	22.8719
uggagugcaguggugugaucuuggcucacugcaaacucc	chr1:21070045-21070256(-)$1	211	132	171	24.4043
uggagugcaguggugccaucucugcucacugcaaccucc	chr5:179253079-179253335(+)$1	256	132	171	29.6978
uggggugcaguggugugaucucggcuuacugcaaccuuc	chrX:133050063-133050276(-)$1	213	134	173	24.9145
uggagugcaguggugcgaucuuggcucacuugcaaccuc	chr2:96855294-96855551(-)$1	257	137	176	19.9359
ggagugcuaguggcgcgaucuuggcuuacugcagccucc	chr7:48003353-48003605(-)$1	252	132	171	20.6816
uggaaugcaguggugcaaucucggcuuacugcaaucucc	chr2:42492144-42492415(+)$1	271	133	172	28.0793
uggagugcaguggugcgaucucggcucacugcaaccucc	chr20:34235845-34236092(-)$1	247	135	174	28.5260
ggaguaggccccacuugacugugaaguguuguucuucug	chr12:102136974-102137272(+)$1	298	169	208	17.0323
uggagugcaguggcgugaugucggcucacugcagccucu	chr20:5992145-5992396(+)$1	251	133	172	22.5994
uggaguacaguggugcaaccucggcucacugcaaccucc	chr3:24530571-24530837(-)$1	266	134	173	20.9619
uggagugcaguggcgugaucuuggcucacugcagccucc	chr6:13627707-13627971(-)$1	264	139	178	22.5994
uggagugcaguggugcgggcucagcucacugcaaccucc	chr5:157241879-157242147(-)$1	268	136	175	28.5260
ACUGAGAGGAAAUGGUUUCUCAUGCCUUUCUUUUUGUAA	chr3:172064404-172064659(+)$1	255	30	69	19.9089
uggggugcaguggcacgaucuugguucacugcaacgucc	chr19:9780582-9780844(-)$1	262	136	175	24.8874
uggagggcaguggugugaucucggcucacugcaaccucc	chr3:171879683-171879923(+)$1	240	130	169	25.8958
uggaaugcaguggugggaucucaacucacugcaaccucu	chr1:17742038-17742311(-)$1	273	135	174	20.4605
uggagugcaguggcaccaucuuugcucacugcaaccucu	chr5:59620299-59620569(-)$1	270	134	173	22.3642
uggagugcaguggugugauguuggcucacugcaaccucu	chr8:121640814-121641102(-)$1	288	136	175	29.8063
ggagugcagguggcacaaucucagcucacugcaaccucc	chr3:120354972-120355231(-)$1	259	134	173	17.4397
acacuugucaaaauaauugaauuuuguuuuguuuuuuuu	chr2:39975973-39976228(-)$1	255	61	100	19.0610
uggagugcaguggcgcgaucuuggcucacugcaaccucu	chr7:27849428-27849682(+)$1	254	145	184	29.8063
uggagugcaguggugcggucucagcucacugcagccucu	chr20:62544677-62544912(+)$1	235	119	158	28.5260
uggagugcaguggcgugaucucggcucauugcaaccucc	chr3:11834387-11834625(-)$1	238	120	159	22.5994
cuggggugcaguggcaugaucucugcuuacugcagccuc	chr3:171769788-171769995(+)$1	207	132	171	20.1226
uggagugcaguggugcaaucuuggcucacugcaaccucc	chr1:76256265-76256474(+)$1	209	145	184	29.2673
uggagugcaguggugcgaucucagcucacugcaaccucc	chr6:144674162-144674410(+)$1	248	135	174	29.6978
uggagugcaguggugugaucauagcucacugcagccucc	chr20:32857910-32858150(-)$1	240	122	161	28.5260
uggagugcaguggugcagucucagcucacugcaaccucc	chr12:1828754-1829006(+)$1	252	133	172	29.8063
uggagugcaguggugugaucuuggcucacugcaaccucu	chr8:71222434-71222686(-)$1	252	137	176	29.8063
uggagugcaauggugcgaucuaggcucauugcaacuucu	chrX:131539742-131539997(-)$1	255	122	161	24.9145
gagugcaguggggugaucucagcucacuccaaccucugc	chr6:119667116-119667360(-)$1	244	121	160	21.7522
uggagugcagugaugcaaucucaguucacugcaaccucc	chr3:171968518-171968780(+)$1	262	135	174	29.8063
AGAGAGCuuuuauuuuuauuuuugagauaaagucucugu	chr1:6607749-6608012(-)$1	263	79	118	20.4837
uggagugcgguggcaggaucucagccuacugcaaccucu	chr10:103548031-103548264(-)$1	233	98	137	17.2491
cagagugcaguggugugaucuuggcucacugcaaccucc	chr16:58636312-58636565(-)$1	253	138	177	27.6678
uggagugcaguggugcgauuuuggcucacugcaaccucc	chr14:23534597-23534849(-)$1	252	83	122	29.8063
uggaguacagugucacaaucucaguucacugcaaccucc	chr7:105372389-105372646(-)$1	257	137	176	21.9803

#DB
.(((((((((((((.........)).)))))))..))))	chr17:64441830-64442089(+)$1	1	148	187	22.5994
.((((((((((((.((.......))))))))))))))..	chrX:133036597-133036823(-)$1	1	103	142	21.2108
..((((.(((((((((.......))))))..))).))))	chr3:136212352-136212603(-)$1	1	132	171	18.3913
)((((((((((((.((.......))))))))))..))))	chr1:1775680-1775935(-)$1	1	135	174	29.2366
((((..(((((((.((.......))..))))))))))).	chr3:176901184-176901407(-)$1	1	23	62	24.1472
.((((.(((((((.((.......))))))))).....))	chr7:23486031-23486282(-)$1	1	136	175	22.4595
(((..(((((...(((.......)))...)))))...))	chr17:80487179-80487430(+)$1	1	7	46	16.8370
(((((((((((((.((.......))))))))))..))))	chr14:21713549-21713759(-)$1	1	133	172	28.5260
((((.(.(((((((.(.......).))))))).)..)))	chr17:19556271-19556528(+)$1	1	134	173	22.8719
(((((((((((((.((.......)))))))))..)))))	chr1:21070045-21070256(-)$1	1	132	171	24.4043
.((((((((((((.((.......))))))))))..))))	chr5:179253079-179253335(+)$1	1	132	171	29.6978
.((((((((((((.((.......))))))))).))))).	chrX:133050063-133050276(-)$1	1	134	173	24.9145
(((((((((((((.((.......)))))).))))..)))	chr2:96855294-96855551(-)$1	1	137	176	19.9359
((((.((((((((.((.......)))))))..)))))))	chr7:48003353-48003605(-)$1	1	132	171	20.6816
((((.((((((((.((.......))))))))))...)))	chr2:42492144-42492415(+)$1	1	133	172	28.0793
(((((((((((((.((.......))))))))))..))))	chr20:34235845-34236092(-)$1	1	135	174	28.5260
((((..(((..(((((.......)))))..))).)))))	chr12:102136974-102137272(+)$1	1	169	208	17.0323
.(((((((((((((.........)).)))))))..))))	chr20:5992145-5992396(+)$1	1	133	172	22.5994
(((((..((((((.((.......))))))))....))))	chr3:24530571-24530837(-)$1	1	134	173	20.9619
.(((((((((((((.........)).)))))))..))))	chr6:13627707-13627971(-)$1	1	139	178	22.5994
(((((((((((((.((.......))))))))))..))))	chr5:157241879-157242147(-)$1	1	136	175	28.5260
)))(((((((((.(((.......))))))))))))((((	chr3:172064404-172064659(+)$1	1	30	69	19.9089
.((((((((((((.((.......))))))))))....))	chr19:9780582-9780844(-)$1	1	136	175	24.8874
.((((((((((((.((.......)))))))))..)))))	chr3:171879683-171879923(+)$1	1	130	169	25.8958
.(((.(((((((((.........)).)))))))...)))	chr1:17742038-17742311(-)$1	1	135	174	20.4605
.((((((((((((((.......))).)))))))..))))	chr5:59620299-59620569(-)$1	1	134	173	22.3642
.((((((((((((.((.......))))))))))..))))	chr8:121640814-121641102(-)$1	1	136	175	29.8063
(((((((((..(((.........)))..)))))..))))	chr3:120354972-120355231(-)$1	1	134	173	17.4397
))))).)))(((((((.......)))))))(((((((((	chr2:39975973-39976228(-)$1	1	61	100	19.0610
.((((((((((((.((.......))))))))))..))))	chr7:27849428-27849682(+)$1	1	145	184	29.8063
(((((((((((((.((.......))))))))))..))))	chr20:62544677-62544912(+)$1	1	119	158	28.5260
.(((((((((((((.........)).)))))))..))))	chr3:11834387-11834625(-)$1	1	120	159	22.5994
.(((((((((((((((.......))).))))))).)).)	chr3:171769788-171769995(+)$1	1	132	171	20.1226
)((((((((((((.((.......))))))))))..))))	chr1:76256265-76256474(+)$1	1	145	184	29.2673
.((((((((((((.((.......))))))))))..))))	chr6:144674162-144674410(+)$1	1	135	174	29.6978
(((((((((((((.((.......))))))))))..))))	chr20:32857910-32858150(-)$1	1	122	161	28.5260
.((((((((((((.((.......))))))))))..))))	chr12:1828754-1829006(+)$1	1	133	172	29.8063
.((((((((((((.((.......))))))))))..))))	chr8:71222434-71222686(-)$1	1	137	176	29.8063
.((((((((((((.((.......))))))))).))))).	chrX:131539742-131539997(-)$1	1	122	161	24.9145
(((.((((((((((((.......))))))))....))))	chr6:119667116-119667360(-)$1	1	121	160	21.7522
.((((((((((((.((.......))))))))))..))))	chr3:171968518-171968780(+)$1	1	135	174	29.8063
(.((((.(((((((((.......))))))))).))))((	chr1:6607749-6608012(-)$1	1	79	118	20.4837
.(((((((((((((.........))).))))))..))))	chr10:103548031-103548264(-)$1	1	98	137	17.2491
..(((((((((((.((.......))))))))))..))).	chr16:58636312-58636565(-)$1	1	138	177	27.6678
.((((((((((((.((.......))))))))))..))))	chr14:23534597-23534849(-)$1	1	83	122	29.8063
(((((..(((((..((.......)).)))))....))))	chr7:105372389-105372646(-)$1	1	137	176	21.9803

#PSSM
[ : 0.36	e : 0.21	! : 0.13	d : 0.08	c : 0.04	f : 0.04	" : 0.02	h : 0.02	g : 0.02	= : 0.02	F : 0.02	
d : 0.45	e : 0.28	c : 0.06	= : 0.04	f : 0.04	" : 0.02	g : 0.02	b : 0.02	: : 0.02	! : 0.02	
d : 0.49	e : 0.28	c : 0.08	= : 0.04	f : 0.04	g : 0.02	b : 0.02	
d : 0.47	e : 0.28	c : 0.06	= : 0.04	! : 0.02	g : 0.02	i : 0.02	b : 0.02	f : 0.02	[ : 0.02	
d : 0.43	e : 0.26	[ : 0.08	! : 0.06	b : 0.04	= : 0.02	g : 0.02	i : 0.02	f : 0.02	c : 0.02	
h : 0.39	g : 0.15	e : 0.10	d : 0.08	! : 0.08	= : 0.02	[ : 0.02	a : 0.02	c : 0.02	i : 0.02	] : 0.02	b : 0.02	f : 0.02	
h : 0.39	g : 0.28	[ : 0.06	c : 0.06	e : 0.04	d : 0.04	! : 0.04	= : 0.02	i : 0.02	f : 0.02	
h : 0.39	g : 0.30	c : 0.08	e : 0.06	d : 0.04	f : 0.04	i : 0.04	= : 0.02	
h : 0.41	g : 0.30	e : 0.08	c : 0.06	f : 0.04	i : 0.04	= : 0.02	d : 0.02	
h : 0.41	g : 0.32	e : 0.06	! : 0.04	f : 0.04	i : 0.04	= : 0.02	c : 0.02	d : 0.02	
h : 0.41	g : 0.32	f : 0.06	e : 0.04	! : 0.04	i : 0.04	= : 0.02	" : 0.02	d : 0.02	
h : 0.41	g : 0.32	e : 0.06	f : 0.04	i : 0.04	c : 0.04	= : 0.02	" : 0.02	d : 0.02	
h : 0.41	g : 0.19	b : 0.10	c : 0.06	f : 0.04	e : 0.04	= : 0.02	" : 0.02	d : 0.02	[ : 0.02	i : 0.02	! : 0.02	
[ : 0.60	c : 0.13	b : 0.10	g : 0.04	f : 0.02	e : 0.02	h : 0.02	i : 0.02	! : 0.02	
b : 0.63	r : 0.15	c : 0.08	f : 0.02	[ : 0.02	e : 0.02	g : 0.02	h : 0.02	i : 0.02	
b : 0.63	r : 0.15	c : 0.06	f : 0.02	a : 0.02	e : 0.02	p : 0.02	g : 0.02	h : 0.02	i : 0.02	
p : 0.84	r : 0.15	
p : 0.84	r : 0.15	
p : 0.84	r : 0.15	
p : 0.84	r : 0.15	
p : 0.84	r : 0.15	
p : 0.84	r : 0.15	
p : 0.82	r : 0.15	c : 0.02	
b : 0.73	c : 0.13	f : 0.02	a : 0.02	e : 0.02	g : 0.02	h : 0.02	i : 0.02	
b : 0.73	c : 0.13	f : 0.02	] : 0.02	e : 0.02	g : 0.02	h : 0.02	i : 0.02	
h : 0.41	] : 0.15	g : 0.15	c : 0.10	f : 0.04	e : 0.04	= : 0.02	2 : 0.02	d : 0.02	i : 0.02	
h : 0.41	g : 0.28	e : 0.06	f : 0.04	2 : 0.04	i : 0.04	] : 0.04	= : 0.02	3 : 0.02	d : 0.02	
h : 0.41	g : 0.32	f : 0.06	e : 0.06	i : 0.04	= : 0.02	3 : 0.02	d : 0.02	2 : 0.02	
h : 0.41	g : 0.32	f : 0.06	e : 0.06	i : 0.04	= : 0.02	3 : 0.02	d : 0.02	2 : 0.02	
h : 0.41	g : 0.32	e : 0.08	2 : 0.04	f : 0.04	i : 0.04	= : 0.02	] : 0.02	
h : 0.41	g : 0.30	e : 0.06	= : 0.04	2 : 0.04	f : 0.04	i : 0.04	d : 0.02	c : 0.02	
h : 0.39	g : 0.30	4 : 0.06	= : 0.04	c : 0.04	e : 0.04	i : 0.04	d : 0.02	2 : 0.02	f : 0.02	
h : 0.39	g : 0.17	] : 0.08	c : 0.06	4 : 0.06	= : 0.04	e : 0.04	2 : 0.04	5 : 0.02	d : 0.02	i : 0.02	f : 0.02	
2 : 0.54	4 : 0.08	e : 0.06	= : 0.04	c : 0.04	g : 0.04	d : 0.04	3 : 0.04	5 : 0.02	a : 0.02	] : 0.02	i : 0.02	
2 : 0.54	4 : 0.08	= : 0.06	3 : 0.06	e : 0.06	] : 0.04	d : 0.04	5 : 0.02	g : 0.02	c : 0.02	i : 0.02	
d : 0.45	e : 0.23	= : 0.06	3 : 0.06	2 : 0.04	5 : 0.02	g : 0.02	f : 0.02	4 : 0.02	b : 0.02	c : 0.02	
d : 0.47	e : 0.28	= : 0.06	c : 0.04	5 : 0.02	3 : 0.02	g : 0.02	f : 0.02	4 : 0.02	b : 0.02	
d : 0.49	e : 0.28	c : 0.06	= : 0.04	6 : 0.02	g : 0.02	f : 0.02	b : 0.02	] : 0.02	
d : 0.47	e : 0.23	c : 0.06	] : 0.06	= : 0.04	6 : 0.02	2 : 0.02	g : 0.02	f : 0.02	b : 0.02	

#score	1115.8824891267877
#seq	46
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_UTR_m3_run1.txt

#BEAR
fffff[bblllbb]ffffff]	chr12:3069171-3069384(+)$1	213	165	186	8.8765
fff[a[bbmmmmbb]a22fff	chr5:133340162-133340409(-)$1	247	192	213	9.9653
dd####bbmmmmbb333dddd	chr17:42266882-42267128(+)$1	246	152	173	8.3954
fffff[bboooooobb]ffff	chr16:4871199-4871418(-)$1	219	176	197	9.5714
""ffffffmmmmffffffiii	chr9:86595741-86596053(+)$1	312	226	247	8.8180
eeeee[bbmmmmbb]eeeee]	chr9:140347338-140347584(-)$1	246	37	58	8.9524
ffffffbbmmmmbb]ffffff	chr5:138629412-138629679(+)$1	267	14	35	10.5516
!dddd[bbmmmmbb]dddd22	chr20:44441403-44441646(+)$1	243	208	229	7.6998
ffffffoooooofffffffff	chr16:2317880-2318129(-)$1	249	78	99	7.6789
!!ccc[bboooooobb]ccc9	chr3:38167813-38168084(-)$1	271	51	72	8.1378
bb[a[cccmmmmccca]bb]e	chr8:38644623-38644919(+)$1	296	120	141	7.3512
ffffff[annnnnaffffff]	chr14:103800511-103800774(+)$1	263	157	178	7.1535
ccc"""bbmmmmbb333ccc]	chr14:21462984-21463230(+)$1	246	15	36	9.9514
fffff[bbnnnnnbbffffff	chr15:78591704-78591975(-)$1	271	249	270	8.3205
[gggggggmmmmggggggg]c	chr17:80441571-80441844(+)$1	273	249	270	8.3314
cc[cccbbmmmmbb]ccc]cc	chr19:35991261-35991514(-)$1	253	231	252	9.6337
fffff[bboooooobb]ffff	chr16:4871218-4871443(-)$1	225	201	222	9.5714
b!!a!!bbmmmmbb22a22bb	chr15:59280193-59280492(+)$1	299	50	71	8.1375
dccc!!bbmmmmbb22ccc]d	chr3:145878459-145878737(-)$1	278	91	112	9.1416
c[ffffffooooooffffff2	chr17:8339412-8339669(+)$1	257	180	201	8.3999
ccc!!cccmmmmccc]ccc]d	chr17:79650377-79650642(-)$1	265	75	96	8.1432
eeeee[bboooooobb]eeee	chr9:97842981-97843250(+)$1	269	168	189	7.8915
iifffffflllffffff]iii	chr2:71635311-71635581(+)$1	270	54	75	7.0793
[ccc[cccmmmmccc333ccc	chr16:28875088-28875354(+)$1	266	179	200	8.5741
iiiiiiiimmmmiiiiiiiii	chr9:131830527-131830830(+)$1	303	234	255	8.1686
gggg"""ammmma333ggggg	chr22:36924937-36925194(-)$1	257	233	254	9.0344
fffff[bbnnnnnbb]fffff	chr9:140347996-140348250(-)$1	254	203	224	8.2656
ffff[cccoooooocccffff	chr16:2014635-2014885(-)$1	250	175	196	8.3517
bbffffffmmmmffffff]bb	chr17:39942649-39942911(-)$1	262	223	244	7.9861
eeee[cccmmmmccc]eeeee	chr3:38167472-38167733(-)$1	261	150	171	7.4650
ggggg[bboooooobb]gggg	chr2:9770836-9771120(-)$1	284	165	186	9.1422
ff[a!!bboooooobb]afff	chr2:191878575-191878832(-)$1	257	12	33	8.9245
iiiiiiiiooooooiiiiiii	chr4:761194-761426(-)$1	232	39	60	7.5657
ggggggbbmmmmbb]gggggg	chr6:30684808-30685081(-)$1	273	152	173	9.9892
ggggg[bboooooobbggggg	chr2:3622873-3623141(+)$1	268	13	34	9.0592
c[ffffffmmmmffffff]cc	chr2:29117811-29118091(+)$1	280	245	266	9.0562
c[ffffffmmmmffffff]cc	chr15:75198735-75199000(-)$1	265	92	113	9.0562
fffff[bbmmmmbbffffff3	chr19:18468345-18468603(+)$1	258	150	171	10.9159
bbffffffmmmmffffff]bb	chr20:62331782-62332015(-)$1	233	18	39	7.9861
fffff[bblllbb]ffffff]	chr12:3069136-3069371(+)$1	235	200	221	8.8765
##ccc[bbmmmmbb]ccc22f	chr2:130938858-130939165(-)$1	307	216	237	9.3350
eeffffffooooooffffff4	chr3:5229939-5230192(+)$1	253	34	55	8.2325
ffffffbbmmmmbb]ffffff	chr2:233415370-233415680(+)$1	310	25	46	10.5516
[bb[a[bbmmmmbb]abbhhh	chr17:79651061-79651307(+)$1	246	163	184	8.4429
c[bb!!bbmmmmbb]bbccc]	chr15:41099389-41099642(-)$1	253	100	121	9.3042
cc[bbcccmmmmccc4444bb	chr5:133512333-133512613(-)$1	280	10	31	6.9407
======bbmmmmbbbb[dddd	chr6:31937121-31937377(+)$1	256	208	229	8.4923
c[ffffffmmmmffffff]cc	chr14:78227256-78227525(-)$1	269	220	241	9.0562
e[ccc[bbmmmmbb]ccc]ee	chr4:152020792-152021041(+)$1	249	78	99	9.8983
eeee!!bboooooobb22eee	chr3:184080984-184081219(+)$1	235	4	25	7.5793
[ccc[cccmmmmccc]ccc]d	chr17:79532338-79532603(-)$1	265	91	112	8.3182
"gggggggmmmmggggggg33	chr17:1945102-1945358(+)$1	256	118	139	8.2552

#otherMatches

#Seq PSSM
UGGAGGCGAAGCGGCUCCAGG	chr12:3069171-3069384(+)$1	213	165	186	8.8765
CGCGGGGAGGGAUCGCGAGCG	chr5:133340162-133340409(-)$1	247	192	213	9.9653
AUGGGAGCUGCAGCAAAGUGU	chr17:42266882-42267128(+)$1	246	152	173	8.3954
CUCUUAUCGAUAAAGACAGGA	chr16:4871199-4871418(-)$1	219	176	197	9.5714
ACCCGUUGUUUGUAAUGGUCC	chr9:86595741-86596053(+)$1	312	226	247	8.8180
GGCCUGCGACACCGAAGGCUU	chr9:140347338-140347584(-)$1	246	37	58	8.9524
GUGGGAGUCUCCGCGUCCCGC	chr5:138629412-138629679(+)$1	267	14	35	10.5516
CGGAGACUUCCGGGACUCCCA	chr20:44441403-44441646(+)$1	243	208	229	7.6998
GUUGGGGCGGAAUCCGACUGC	chr16:2317880-2318129(-)$1	249	78	99	7.6789
CUGCCUUCAAGAAAGAUGGUU	chr3:38167813-38168084(-)$1	271	51	72	8.1378
CGGGAGGCGGGAGUCCGCGAG	chr8:38644623-38644919(+)$1	296	120	141	7.3512
CGGGGAAGGUGCACUCCCCGA	chr14:103800511-103800774(+)$1	263	157	178	7.1535
CAGCAAGGCUGACCGCACUGA	chr14:21462984-21463230(+)$1	246	15	36	9.9514
CUCGGUGUACGGGGCCUGAGG	chr15:78591704-78591975(-)$1	271	249	270	8.3205
UUGAAUGGGAUACCAUUCACC	chr17:80441571-80441844(+)$1	273	249	270	8.3314
CAAGGUGAGACAUCUACCAUG	chr19:35991261-35991514(-)$1	253	231	252	9.6337
CUCUUAUCGAUAAAGACAGGA	chr16:4871218-4871443(-)$1	225	201	222	9.5714
AGAAGAGGGUGGCUAAUGAUU	chr15:59280193-59280492(+)$1	299	50	71	8.1375
GCUGUCCCGCGAGGCUCGGCC	chr3:145878459-145878737(-)$1	278	91	112	9.1416
GAUUCCGGUGGCCUCCGGAAG	chr17:8339412-8339669(+)$1	257	180	201	8.3999
CGGUAGGUGUCCGCCCCCGCG	chr17:79650377-79650642(-)$1	265	75	96	8.1432
UAACAAAUAAUUAAAUCUGUU	chr9:97842981-97843250(+)$1	269	168	189	7.8915
GACUUACCAGAGGUAAGAUUU	chr2:71635311-71635581(+)$1	270	54	75	7.0793
UGGGACCGGAACCGGAACCCC	chr16:28875088-28875354(+)$1	266	179	200	8.5741
CCCUGGAGAAGCCUCCAGGGU	chr9:131830527-131830830(+)$1	303	234	255	8.1686
CCGCACGCUACUGAACGCGGG	chr22:36924937-36925194(-)$1	257	233	254	9.0344
GGGGACGCCCUCAGCAUCUCC	chr9:140347996-140348250(-)$1	254	203	224	8.2656
GGGAGCCCUUGUCUGGGUCUC	chr16:2014635-2014885(-)$1	250	175	196	8.3517
CGGCGACUUGGGGGUCGCGCG	chr17:39942649-39942911(-)$1	262	223	244	7.9861
AGGGGCAUGAGGGUGGUCCUG	chr3:38167472-38167733(-)$1	261	150	171	7.4650
CUCCGGGCGGGAAGGUGCGGG	chr2:9770836-9771120(-)$1	284	165	186	9.1422
GCAGAGGCGACCCAGCGCGCU	chr2:191878575-191878832(-)$1	257	12	33	8.9245
UGCUUUUUAUCUAAAGGAAGC	chr4:761194-761426(-)$1	232	39	60	7.5657
AGGUGACUUGGAAGUUCGCUU	chr6:30684808-30685081(-)$1	273	152	173	9.9892
UUUUGACGUGCUCUCGCGAGA	chr2:3622873-3623141(+)$1	268	13	34	9.0592
GACGGGCAGCCAUGUUCGCCA	chr2:29117811-29118091(+)$1	280	245	266	9.0562
CGGGGGAGGUUUCUCCCUGGG	chr15:75198735-75199000(-)$1	265	92	113	9.0562
CCAAGCGUGUUGACCUUGGCC	chr19:18468345-18468603(+)$1	258	150	171	10.9159
GGCAGGCGAGAUUGCCUGACC	chr20:62331782-62332015(-)$1	233	18	39	7.9861
UGGAGGCGAAGCGGCUCCAGG	chr12:3069136-3069371(+)$1	235	200	221	8.8765
CCGGUUGAGUCUUCUGCCACC	chr2:130938858-130939165(-)$1	307	216	237	9.3350
GGCCGUGGGCCCGACCGCGGG	chr3:5229939-5230192(+)$1	253	34	55	8.2325
GUCACUCCCUGAGGCAGUGGC	chr2:233415370-233415680(+)$1	310	25	46	10.5516
CGGACCGGCCGCCCUGCCCGC	chr17:79651061-79651307(+)$1	246	163	184	8.4429
GAUCUUGAGAGGUCUGGCGGU	chr15:41099389-41099642(-)$1	253	100	121	9.3042
CUAACGCCUCCCGGCUCUCGU	chr5:133512333-133512613(-)$1	280	10	31	6.9407
GGGCCUGGUGGUCCGCUGCAU	chr6:31937121-31937377(+)$1	256	208	229	8.4923
UACGACUAGGCCUAGUCGAAG	chr14:78227256-78227525(-)$1	269	220	241	9.0562
GUCGCGACUGUCGUGGCGUCU	chr4:152020792-152021041(+)$1	249	78	99	9.8983
CCUAUUGCUUCCCCGCCCUGG	chr3:184080984-184081219(+)$1	235	4	25	7.5793
UGCCCCGGCACCCCGUGGCUG	chr17:79532338-79532603(-)$1	265	91	112	8.3182
CGCCUUGGCGCUCCGAGGCCC	chr17:1945102-1945358(+)$1	256	118	139	8.2552

#DB
(((((.((...)).)))))).	chr12:3069171-3069384(+)$1	1	165	186	8.8765
(((.(.((....)).)..)))	chr5:133340162-133340409(-)$1	1	192	213	9.9653
((....((....))...))))	chr17:42266882-42267128(+)$1	1	152	173	8.3954
(((((.((......)).))))	chr16:4871199-4871418(-)$1	1	176	197	9.5714
..((((((....)))))))))	chr9:86595741-86596053(+)$1	1	226	247	8.8180
(((((.((....)).))))).	chr9:140347338-140347584(-)$1	1	37	58	8.9524
((((((((....)).))))))	chr5:138629412-138629679(+)$1	1	14	35	10.5516
.((((.((....)).))))..	chr20:44441403-44441646(+)$1	1	208	229	7.6998
((((((......)))))))))	chr16:2317880-2318129(-)$1	1	78	99	7.6789
..(((.((......)).))).	chr3:38167813-38168084(-)$1	1	51	72	8.1378
((.(.(((....)))).)).)	chr8:38644623-38644919(+)$1	1	120	141	7.3512
((((((.(.....))))))).	chr14:103800511-103800774(+)$1	1	157	178	7.1535
(((...((....))...))).	chr14:21462984-21463230(+)$1	1	15	36	9.9514
(((((.((.....))))))))	chr15:78591704-78591975(-)$1	1	249	270	8.3205
.(((((((....))))))).)	chr17:80441571-80441844(+)$1	1	249	270	8.3314
((.(((((....)).))).))	chr19:35991261-35991514(-)$1	1	231	252	9.6337
(((((.((......)).))))	chr16:4871218-4871443(-)$1	1	201	222	9.5714
(..(..((....))..)..))	chr15:59280193-59280492(+)$1	1	50	71	8.1375
((((..((....))..))).)	chr3:145878459-145878737(-)$1	1	91	112	9.1416
(.((((((......)))))).	chr17:8339412-8339669(+)$1	1	180	201	8.3999
(((..(((....))).))).)	chr17:79650377-79650642(-)$1	1	75	96	8.1432
(((((.((......)).))))	chr9:97842981-97843250(+)$1	1	168	189	7.8915
((((((((...)))))).)))	chr2:71635311-71635581(+)$1	1	54	75	7.0793
.(((.(((....)))...)))	chr16:28875088-28875354(+)$1	1	179	200	8.5741
((((((((....)))))))))	chr9:131830527-131830830(+)$1	1	234	255	8.1686
((((...(....)...)))))	chr22:36924937-36925194(-)$1	1	233	254	9.0344
(((((.((.....)).)))))	chr9:140347996-140348250(-)$1	1	203	224	8.2656
((((.(((......)))))))	chr16:2014635-2014885(-)$1	1	175	196	8.3517
((((((((....)))))).))	chr17:39942649-39942911(-)$1	1	223	244	7.9861
((((.(((....))).)))))	chr3:38167472-38167733(-)$1	1	150	171	7.4650
(((((.((......)).))))	chr2:9770836-9771120(-)$1	1	165	186	9.1422
((.(..((......)).))))	chr2:191878575-191878832(-)$1	1	12	33	8.9245
((((((((......)))))))	chr4:761194-761426(-)$1	1	39	60	7.5657
((((((((....)).))))))	chr6:30684808-30685081(-)$1	1	152	173	9.9892
(((((.((......)))))))	chr2:3622873-3623141(+)$1	1	13	34	9.0592
(.((((((....)))))).))	chr2:29117811-29118091(+)$1	1	245	266	9.0562
(.((((((....)))))).))	chr15:75198735-75199000(-)$1	1	92	113	9.0562
(((((.((....)))))))).	chr19:18468345-18468603(+)$1	1	150	171	10.9159
((((((((....)))))).))	chr20:62331782-62332015(-)$1	1	18	39	7.9861
(((((.((...)).)))))).	chr12:3069136-3069371(+)$1	1	200	221	8.8765
..(((.((....)).)))..)	chr2:130938858-130939165(-)$1	1	216	237	9.3350
((((((((......)))))).	chr3:5229939-5230192(+)$1	1	34	55	8.2325
((((((((....)).))))))	chr2:233415370-233415680(+)$1	1	25	46	10.5516
.((.(.((....)).))))))	chr17:79651061-79651307(+)$1	1	163	184	8.4429
(.((..((....)).))))).	chr15:41099389-41099642(-)$1	1	100	121	9.3042
((.(((((....)))....))	chr5:133512333-133512613(-)$1	1	10	31	6.9407
))))))((....))((.((((	chr6:31937121-31937377(+)$1	1	208	229	8.4923
(.((((((....)))))).))	chr14:78227256-78227525(-)$1	1	220	241	9.0562
(.(((.((....)).))).))	chr4:152020792-152021041(+)$1	1	78	99	9.8983
((((..((......))..)))	chr3:184080984-184081219(+)$1	1	4	25	7.5793
.(((.(((....))).))).)	chr17:79532338-79532603(-)$1	1	91	112	8.3182
.(((((((....)))))))..	chr17:1945102-1945358(+)$1	1	118	139	8.2552

#PSSM
f : 0.26	c : 0.17	e : 0.11	b : 0.07	[ : 0.07	g : 0.07	i : 0.05	d : 0.03	" : 0.03	! : 0.03	# : 0.01	= : 0.01	
f : 0.26	c : 0.13	g : 0.11	[ : 0.11	e : 0.09	b : 0.07	i : 0.05	d : 0.03	! : 0.03	" : 0.01	# : 0.01	= : 0.01	
f : 0.42	c : 0.15	g : 0.11	e : 0.07	[ : 0.07	i : 0.03	b : 0.03	# : 0.01	d : 0.01	! : 0.01	= : 0.01	
f : 0.40	c : 0.13	g : 0.11	e : 0.07	a : 0.05	[ : 0.03	i : 0.03	b : 0.03	# : 0.01	d : 0.01	" : 0.01	! : 0.01	= : 0.01	
f : 0.38	! : 0.11	[ : 0.09	g : 0.09	c : 0.07	a : 0.03	e : 0.03	" : 0.03	i : 0.03	# : 0.01	d : 0.01	b : 0.01	= : 0.01	
[ : 0.32	f : 0.24	c : 0.15	! : 0.09	g : 0.05	" : 0.03	i : 0.03	# : 0.01	= : 0.01	
b : 0.55	f : 0.17	c : 0.13	g : 0.03	i : 0.03	o : 0.01	[ : 0.01	" : 0.01	
b : 0.55	f : 0.17	c : 0.13	a : 0.03	g : 0.03	i : 0.03	o : 0.01	
m : 0.63	o : 0.24	l : 0.05	n : 0.05	
m : 0.63	o : 0.24	l : 0.05	n : 0.05	
m : 0.63	o : 0.24	l : 0.05	n : 0.05	
m : 0.63	o : 0.24	n : 0.05	b : 0.03	f : 0.01	
b : 0.36	o : 0.23	f : 0.15	c : 0.11	n : 0.05	g : 0.03	i : 0.01	a : 0.01	
b : 0.36	o : 0.23	f : 0.15	c : 0.11	] : 0.03	g : 0.03	a : 0.01	i : 0.01	3 : 0.01	
f : 0.26	] : 0.21	b : 0.21	c : 0.13	3 : 0.05	g : 0.03	2 : 0.03	i : 0.03	
f : 0.32	b : 0.19	3 : 0.07	c : 0.07	] : 0.07	a : 0.05	g : 0.05	2 : 0.03	i : 0.03	e : 0.01	d : 0.01	4 : 0.01	
f : 0.34	] : 0.13	c : 0.13	g : 0.09	3 : 0.05	2 : 0.03	e : 0.03	i : 0.03	b : 0.03	d : 0.01	a : 0.01	4 : 0.01	[ : 0.01	
f : 0.38	c : 0.17	g : 0.11	2 : 0.05	d : 0.05	e : 0.05	b : 0.03	i : 0.03	] : 0.01	3 : 0.01	a : 0.01	4 : 0.01	
f : 0.30	c : 0.13	] : 0.13	g : 0.11	i : 0.07	e : 0.07	d : 0.05	2 : 0.03	b : 0.01	h : 0.01	4 : 0.01	
f : 0.30	c : 0.15	e : 0.09	] : 0.09	i : 0.07	b : 0.07	g : 0.07	d : 0.03	2 : 0.03	h : 0.01	3 : 0.01	
f : 0.21	] : 0.11	c : 0.11	d : 0.09	e : 0.09	i : 0.07	b : 0.07	g : 0.07	2 : 0.03	3 : 0.03	9 : 0.01	4 : 0.01	h : 0.01	

#score	450.5798389679192
#seq	52
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_CDS_m2_run2.txt

#BEAR
:ddddqqqqqqqqdddd:	chr11:62290527-62290800(-)$1	273	43	61	12.0440
eeeeeqqqqqqqqeeeee	chr11:62286572-62286828(-)$1	256	114	132	14.5061
eeeeeqqqqqqqqeeeee	chr3:37365721-37366022(+)$1	301	6	24	14.5061
ee[bbqqqqqqqqbbeee	chr11:62286369-62286605(-)$1	236	203	221	13.3587
fddddqqqqqqqqdddd0	chr2:55253888-55254152(-)$1	264	160	178	13.1875
:ddddqqqqqqqqdddde	chr11:62290721-62290952(-)$1	231	108	126	12.9032
h!!bbqqqqqqqqbb]hh	chr3:37366585-37366878(+)$1	293	177	195	11.5150
ggcccqqqqqqqqccc22	chr3:37367418-37367694(+)$1	276	150	168	12.2367
:ddddqqqqqqqqddddB	chr21:39471289-39471542(-)$1	253	145	163	11.8967
eddddqqqqqqqqdddd:	chr11:62284728-62285015(-)$1	287	85	103	13.0642
fddddqqqqqqqqdddd0	chr2:55253828-55254060(-)$1	232	68	86	13.1875
"ddddqqqqqqqqdddd5	chr11:62294486-62294761(-)$1	275	53	71	12.8874
eeeeerrrrrrrrreeee	chr1:39797676-39797949(+)$1	273	174	192	8.8996
eeeeeqqqqqqqqeeeee	chr11:62293173-62293427(-)$1	254	133	151	14.5061
eeeeeqqqqqqqqeeeee	chr7:148702218-148702471(-)$1	253	185	203	14.5061
ddcccqqqqqqqqccc]d	chr2:55253544-55253784(-)$1	240	198	216	12.4927
ggcccqqqqqqqqccc22	chr3:37367516-37367774(+)$1	258	52	70	12.2367
eeeeeqqqqqqqqeeeee	chr11:62300333-62300597(-)$1	264	240	258	14.5061
eeeeeqqqqqqqqeeeee	chr3:37365549-37365808(+)$1	259	178	196	14.5061
eee[arrrrrrrrra]ee	chr1:214815082-214815314(+)$1	232	127	145	8.1127
[bb[aqqqqqqqqa]bb]	chr11:62291909-62292150(-)$1	241	217	235	11.1058
ff[bbqqqqqqqqbbfff	chr19:4037212-4037479(+)$1	267	48	66	11.7323
eeeeerrrrrrrrreeee	chr15:40913964-40914222(+)$1	258	13	31	8.8996
eeeeeqqqqqqqqeeeee	chr15:40915379-40915642(+)$1	263	4	22	14.5061
dddddqqqqqqqqddddd	chr1:203766812-203767065(+)$1	253	208	226	13.4048
eeeeeqqqqqqqqeeeee	chr3:160134046-160134300(+)$1	254	174	192	14.5061
eeeeeqqqqqqqqeeeee	chr1:39800999-39801251(+)$1	252	97	115	14.5061
$ddddqqqqqqqqdddd>	chr18:9256905-9257166(+)$1	261	105	123	13.2609
:ddddqqqqqqqqdddd:	chr7:72891847-72892162(-)$1	315	28	46	12.0440
:ddddqqqqqqqqdddd:	chr1:214819808-214820064(+)$1	256	6	24	12.0440
eeeeeqqqqqqqqeeeee	chr1:214815838-214816099(+)$1	261	89	107	14.5061
eeeeerrrrrrrrreeee	chr11:62297244-62297504(-)$1	260	46	64	8.8996
eeeeeqqqqqqqqeeeee	chr3:37365626-37365911(+)$1	285	101	119	14.5061
cc[bbqqqqqqqqbbccc	chr11:62285119-62285382(-)$1	263	166	184	12.0135
gg[bbqqqqqqqqbbggg	chr3:47161680-47161972(-)$1	292	93	111	12.1847
eeeeeqqqqqqqqeeeee	chr9:100700249-100700509(-)$1	260	168	186	14.5061
b!!bbqqqqqqqqbb22b	chr4:104079676-104079954(-)$1	278	30	48	11.3502
eee[aqqqqqqqqa]eee	chr11:62285839-62286158(-)$1	319	66	84	13.8131
ff[bbqqqqqqqqbb333	chr3:160141303-160141538(+)$1	235	129	147	12.0751

#otherMatches

#Seq PSSM
AAGUGGACAUUGACACUC	chr11:62290527-62290800(-)$1	273	43	61	12.0440
GAUGUAGAUGUCAACAUC	chr11:62286572-62286828(-)$1	256	114	132	14.5061
CAGAUAUUAAAAGGUCUG	chr3:37365721-37366022(+)$1	301	6	24	14.5061
AAAGUGCAGGCAAACUUG	chr11:62286369-62286605(-)$1	236	203	221	13.3587
AACUUGGAAAGUAAAGUG	chr2:55253888-55254152(-)$1	264	160	178	13.1875
GACCCAAAAUGAAGGGUG	chr11:62290721-62290952(-)$1	231	108	126	12.9032
AAACUAAACUGAAAGCUC	chr3:37366585-37366878(+)$1	293	177	195	11.5150
UCACUAAGAAAGCAGUAU	chr3:37367418-37367694(+)$1	276	150	168	12.2367
UGGGACAUCUGGCUCCUG	chr21:39471289-39471542(-)$1	253	145	163	11.8967
UGGAAAAGUAACAUUCCC	chr11:62284728-62285015(-)$1	287	85	103	13.0642
AACUUGGAAAGUAAAGUG	chr2:55253828-55254060(-)$1	232	68	86	13.1875
ACUUGAAGAGCCCCAAGG	chr11:62294486-62294761(-)$1	275	53	71	12.8874
AUGCCCUAGAACAAGGUA	chr1:39797676-39797949(+)$1	273	174	192	8.8996
AGGUCCUGAAGUUGACCU	chr11:62293173-62293427(-)$1	254	133	151	14.5061
CAGAGGAGUUUGACUCUG	chr7:148702218-148702471(-)$1	253	185	203	14.5061
UGACUCCAGAUUUAGUAC	chr2:55253544-55253784(-)$1	240	198	216	12.4927
UCACUAAGAAAGCAGUAU	chr3:37367516-37367774(+)$1	258	52	70	12.2367
CUCCUAAACUGAAAGGAG	chr11:62300333-62300597(-)$1	264	240	258	14.5061
CAGAUAUUAAAAGGUCUG	chr3:37365549-37365808(+)$1	259	178	196	14.5061
UCUGUGAAAGAAAGAGAG	chr1:214815082-214815314(+)$1	232	127	145	8.1127
AAGGUGACAUUAAAGCUC	chr11:62291909-62292150(-)$1	241	217	235	11.1058
UUGCAGAGAGAAGUGGGG	chr19:4037212-4037479(+)$1	267	48	66	11.7323
GUGCAAAUAGCAGCUGCA	chr15:40913964-40914222(+)$1	258	13	31	8.8996
CUUUGAACUAUCCCAAAG	chr15:40915379-40915642(+)$1	263	4	22	14.5061
AUCUACCUAGUACUAGAG	chr1:203766812-203767065(+)$1	253	208	226	13.4048
AUCAGUGUUUAUUUUGGU	chr3:160134046-160134300(+)$1	254	174	192	14.5061
UACAAGAAACAUAUUGUG	chr1:39800999-39801251(+)$1	252	97	115	14.5061
UUUUGUCAAUUGCCAAAU	chr18:9256905-9257166(+)$1	261	105	123	13.2609
GAGCUGAAAAAGAAGUUG	chr7:72891847-72892162(-)$1	315	28	46	12.0440
AUAGCAUUGAAAAGCUGA	chr1:214819808-214820064(+)$1	256	6	24	12.0440
GUGAACACAAAAUUUUAC	chr1:214815838-214816099(+)$1	261	89	107	14.5061
AGGAGAGAUAAAAGCUCC	chr11:62297244-62297504(-)$1	260	46	64	8.8996
CAGAUAUUAAAAGGUCUG	chr3:37365626-37365911(+)$1	285	101	119	14.5061
GCAUCAACUUGAAGGGCC	chr11:62285119-62285382(-)$1	263	166	184	12.0135
AAAGUGAUGGUGAGCUUC	chr3:47161680-47161972(-)$1	292	93	111	12.1847
AGGUAAUGAAAAAUACCU	chr9:100700249-100700509(-)$1	260	168	186	14.5061
AAGGGAGAAAACACUGAU	chr4:104079676-104079954(-)$1	278	30	48	11.3502
UGAGAGGACCAGAUGUUA	chr11:62285839-62286158(-)$1	319	66	84	13.8131
AGUCAGGUAAUAGUGUUU	chr3:160141303-160141538(+)$1	235	129	147	12.0751

#DB
.((((........)))).	chr11:62290527-62290800(-)$1	1	43	61	12.0440
(((((........)))))	chr11:62286572-62286828(-)$1	1	114	132	14.5061
(((((........)))))	chr3:37365721-37366022(+)$1	1	6	24	14.5061
((.((........)))))	chr11:62286369-62286605(-)$1	1	203	221	13.3587
(((((........)))).	chr2:55253888-55254152(-)$1	1	160	178	13.1875
.((((........))))(	chr11:62290721-62290952(-)$1	1	108	126	12.9032
(..((........)).))	chr3:37366585-37366878(+)$1	1	177	195	11.5150
(((((........)))..	chr3:37367418-37367694(+)$1	1	150	168	12.2367
.((((........)))))	chr21:39471289-39471542(-)$1	1	145	163	11.8967
)((((........)))).	chr11:62284728-62285015(-)$1	1	85	103	13.0642
(((((........)))).	chr2:55253828-55254060(-)$1	1	68	86	13.1875
.((((........)))).	chr11:62294486-62294761(-)$1	1	53	71	12.8874
(((((.........))))	chr1:39797676-39797949(+)$1	1	174	192	8.8996
(((((........)))))	chr11:62293173-62293427(-)$1	1	133	151	14.5061
(((((........)))))	chr7:148702218-148702471(-)$1	1	185	203	14.5061
(((((........))).)	chr2:55253544-55253784(-)$1	1	198	216	12.4927
(((((........)))..	chr3:37367516-37367774(+)$1	1	52	70	12.2367
(((((........)))))	chr11:62300333-62300597(-)$1	1	240	258	14.5061
(((((........)))))	chr3:37365549-37365808(+)$1	1	178	196	14.5061
(((.(.........).))	chr1:214815082-214815314(+)$1	1	127	145	8.1127
.((.(........).)).	chr11:62291909-62292150(-)$1	1	217	235	11.1058
((.((........)))))	chr19:4037212-4037479(+)$1	1	48	66	11.7323
(((((.........))))	chr15:40913964-40914222(+)$1	1	13	31	8.8996
(((((........)))))	chr15:40915379-40915642(+)$1	1	4	22	14.5061
)((((........))))(	chr1:203766812-203767065(+)$1	1	208	226	13.4048
(((((........)))))	chr3:160134046-160134300(+)$1	1	174	192	14.5061
(((((........)))))	chr1:39800999-39801251(+)$1	1	97	115	14.5061
.((((........)))).	chr18:9256905-9257166(+)$1	1	105	123	13.2609
.((((........)))).	chr7:72891847-72892162(-)$1	1	28	46	12.0440
.((((........)))).	chr1:214819808-214820064(+)$1	1	6	24	12.0440
(((((........)))))	chr1:214815838-214816099(+)$1	1	89	107	14.5061
(((((.........))))	chr11:62297244-62297504(-)$1	1	46	64	8.8996
(((((........)))))	chr3:37365626-37365911(+)$1	1	101	119	14.5061
((.((........)))))	chr11:62285119-62285382(-)$1	1	166	184	12.0135
((.((........)))))	chr3:47161680-47161972(-)$1	1	93	111	12.1847
(((((........)))))	chr9:100700249-100700509(-)$1	1	168	186	14.5061
(..((........))..)	chr4:104079676-104079954(-)$1	1	30	48	11.3502
(((.(........).)))	chr11:62285839-62286158(-)$1	1	66	84	13.8131
((.((........))...	chr3:160141303-160141538(+)$1	1	129	147	12.0751

#PSSM
e : 0.48	: : 0.12	f : 0.10	g : 0.07	d : 0.05	h : 0.02	" : 0.02	[ : 0.02	$ : 0.02	c : 0.02	b : 0.02	
e : 0.46	d : 0.30	g : 0.07	! : 0.05	f : 0.05	b : 0.02	c : 0.02	
e : 0.43	d : 0.28	[ : 0.12	c : 0.07	! : 0.05	b : 0.02	
e : 0.38	d : 0.28	b : 0.17	c : 0.07	[ : 0.07	
e : 0.38	d : 0.28	b : 0.17	c : 0.07	a : 0.07	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
q : 0.89	r : 0.10	
e : 0.30	d : 0.28	b : 0.17	r : 0.10	c : 0.07	a : 0.05	
e : 0.38	d : 0.28	b : 0.17	c : 0.07	] : 0.05	a : 0.02	
e : 0.43	d : 0.28	c : 0.10	] : 0.05	b : 0.02	f : 0.02	g : 0.02	2 : 0.02	3 : 0.02	
e : 0.46	d : 0.28	2 : 0.07	h : 0.02	] : 0.02	b : 0.02	f : 0.02	c : 0.02	g : 0.02	3 : 0.02	
e : 0.48	: : 0.10	0 : 0.05	2 : 0.05	d : 0.05	h : 0.02	B : 0.02	5 : 0.02	] : 0.02	f : 0.02	> : 0.02	c : 0.02	g : 0.02	b : 0.02	3 : 0.02	

#score	494.92553298850805
#seq	39
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_transcript_m3_run2.txt

#BEAR
fff[eeeee"""eeeeemmmmeeeee4444eeeeeff	chr17:16284315-16284596(+)$1	281	35	72	11.7697
dd[ccc!!cccbb!!bbmmmmbb4444bb]ccc22cc	chr2:61765237-61765499(-)$1	262	152	189	13.5045
EE==========[a!!ammmma22a]==========f	chr13:92000235-92000474(+)$1	239	96	133	12.3655
eeedddd!!ccc!!cccmmmmccc22ccc]dddd]ee	chr3:37284660-37284985(+)$1	325	140	177	13.4506
c"""eeeee!!ffffffmmmmffffff]eeeee333c	chr19:2270097-2270374(+)$1	277	127	164	12.6056
hhhh[a####gggggggmmmmggggggg22a]hhhhh	chr6:32095846-32096103(-)$1	257	35	72	11.8784
ccc[ccc[eeeeecccmmmmccc]eeeee]ccc22cc	chr4:56262028-56262277(+)$1	249	80	117	11.5238
e"""bb[ggggggg[bbmmmmbb]gggggggbbeeee	chr5:133707165-133707394(+)$1	229	186	223	13.7448
eeeee!!ccc[ccc[bbmmmmbb]cccccc333eeee	chr11:64949279-64949544(+)$1	265	135	172	14.2780
dddggggggggggggggmmmmggggggg22ggggggg	chr12:125398683-125398946(-)$1	263	167	204	12.8599
bb[bb[bb!!gggggggmmmmgggggggbbbbbb]ee	chr8:17941466-17941707(-)$1	241	179	216	11.4095
[dddd"""bb"""ccc!!ammmma22ccc22bb333d	chr7:99686488-99686804(+)$1	316	152	189	10.8392
!eeeee####ccc!!bbmmmmbb]ccc4444eeeee4	chr15:89878265-89878481(+)$1	216	162	199	14.7923
b[eeeee[a"""ddddmmmmdddd333a]eeeee]bb	chr19:1408199-1408477(+)$1	278	131	168	10.7005
ff"""ffffff[ccc[ammmma]ccc]ffffff22ff	chr2:85769648-85769932(+)$1	284	194	231	12.2859
===========####bbmmmmbb333===========	chr6:47445514-47445792(+)$1	278	42	79	14.9896
c####ccc!!ccc[cccmmmmccc]ccc>>>>>>>>>	chr1:94313074-94313317(+)$1	243	111	148	12.8517
ee[eeeeeccc!!ddddmmmmdddd333ccc]eeeee	chr1:235491351-235491595(-)$1	244	125	162	12.1675
beeeeedddd####cccmmmmcccdddd]eeeee333	chr12:49658766-49659008(+)$1	242	178	215	12.2947
ddd[bb!!bb[ccc[cccmmmmccc]ccc]bb22bb]	chr16:75018806-75019087(-)$1	281	176	213	10.9997
dddd####ccc[cccooooooccc]ccc4444ddddE	chr4:56963489-56963725(+)$1	236	188	225	9.8126
fff:gggggggeeeeeammmma]eeeee]ggggggg:	chr9:91926024-91926276(+)$1	252	64	101	10.3691
b!!ccc####eeeeebbmmmmbb]eeeee]ccc]bb:	chr17:43024913-43025181(-)$1	268	224	261	12.1965
"""bb[ccc####ddddmmmmdddd333cccbb333e	chr10:129924495-129924745(-)$1	250	101	138	12.8558
h"""bb[bb[a!!ddddmmmmdddd]a]bb]bb333h	chr19:39833023-39833277(+)$1	254	163	200	12.0134
b####bb[dddd"""bbmmmmbb333dddd]bb22bb	chr10:108729712-108729950(+)$1	238	85	122	12.7504
:ffffff[adddd[cccmmmmccc]dddd22a]ffff	chr3:183353788-183354032(+)$1	244	167	204	11.4526
fffff[a[bb[ccc[bbmmmmbb]ccc]bb22a]fff	chr16:30662130-30662417(+)$1	287	151	188	13.0564
e!!dddd[bbeeeee!!ammmma22eeeee]bb22dd	chr8:145650730-145651010(-)$1	280	119	156	11.0086
GGddddbb[dddd[cccmmmmccc22dddd]bb]ddd	chr17:74733264-74733513(-)$1	249	86	123	10.3863
ffffff####ffffff[allla]ffffff22ffffff	chr17:79894942-79895209(-)$1	267	111	148	10.2357
!!dddd[ggggggg[ccclllcccggggggg]dddd2	chr22:38902069-38902317(-)$1	248	31	68	10.3787
ffffff!!ccc[a[cccmmmmccc]a]ccc333ffff	chr1:109825592-109825852(-)$1	260	7	44	13.8502
dd[eeeeeeeeee"""ammmma333eeeee]eeeeed	chr4:17812498-17812803(+)$1	305	255	292	12.4190
ccc[ccc[bb[ccc[ammmmaccc]bbccc]cccfff	chr1:894494-894738(-)$1	244	39	76	11.8317
eee####bb[cccddddmmmmdddd]ccc22bb22ee	chr11:291207-291460(+)$1	253	121	158	12.8896
gg!!ccc[a!!ffffffmmmmffffff]a]ccc22gg	chr16:88729360-88729637(-)$1	277	64	101	13.7373
d[eeeee####ffffffmmmmffffff333eeeee]d	chr2:20550435-20550706(-)$1	271	152	189	12.9136
effffff!!dddd!!bbmmmmbb22ddddffffff]e	chr3:38206926-38207182(+)$1	256	131	168	11.9472
gggggg$$$$$ffffffmmmmffffffggggggg333	chr8:87354874-87355138(+)$1	264	171	208	12.4126
cceeeeeggggggg[bbmmmmbb]ggggggg]eeeee	chr2:46926276-46926541(+)$1	265	127	164	13.5339
eeeee[a[dddd!!a[ammmmaa22dddd]aeeeee:	chr2:231577487-231577742(+)$1	255	168	205	12.1629
eeeeccc[bb[bb[cccmmmmccc]bb]bb]ccc]ee	chr4:78078369-78078626(+)$1	257	63	100	12.7716
eeee"""a[bb[eeeeennnnneeeee4444bb]a33	chr17:2233478-2233744(-)$1	266	116	153	9.4080
eeeee!!ccc[ggggggglllggggggg]ccc4444e	chr6:166755853-166756149(-)$1	296	152	189	11.5851
[eeeee!!bbgggggggmmmmggggggg333bb22ee	chr16:2205219-2205440(-)$1	221	145	182	14.8020
ccc[gggggggeeeeeammmma]eeeee]ggggggg]	chr9:91926080-91926310(+)$1	230	8	45	12.4959
fff[a[bb!!a[bb[bbmmmmbb]bb]a22bb]a]ff	chr10:101379907-101380260(-)$1	353	112	149	12.1231
"""cccggggggg[bbmmmmbbggggggg22ccc333	chr5:43121610-43121928(+)$1	318	4	41	11.9569
iiiii22bbccc[a[bbmmmmbba]cccdddd[eeee	chr17:25621063-25621309(+)$1	246	154	191	11.3307

#otherMatches

#Seq PSSM
GUGAUAAGUGACGCAACACUCGUUGCAUAAAUUUGCG	chr17:16284315-16284596(+)$1	281	35	72	11.7697
ggagcuacagcaucagcaagagcaacaguagcuacag	chr2:61765237-61765499(-)$1	262	152	189	13.5045
uggccggggcgggUCUCGGCCGUUGGCCGCCCCGGCG	chr13:92000235-92000474(+)$1	239	96	133	12.3655
GGGGCUGGAUGGGGGGCCGAGGCCAGCCAGUGGCACC	chr3:37284660-37284985(+)$1	325	140	177	13.4506
GGGGGCGGGGUCGGCCUUGGGGGGCUGGUCCGCGGAC	chr19:2270097-2270374(+)$1	277	127	164	12.6056
UUUUGAAAGAGUCAACUGAUUAGUUGGUGAUGGGGAG	chr6:32095846-32096103(-)$1	257	35	72	11.8784
CCGAGGCAGCUGGCUGACUCCAGUUUAGCCGCCGCCG	chr4:56262028-56262277(+)$1	249	80	117	11.5238
UAGAUGACGGCCCCUCAAAGCUGCGGGGCUGCAGGGC	chr5:133707165-133707394(+)$1	229	186	223	13.7448
CCCUGCCCUGAGCUGCCACCGGGAAGCCAGCCUCAGG	chr11:64949279-64949544(+)$1	265	135	172	14.2780
GGUUUGUCGUCUGUUGCGGGGGCGGCAGUUAUGGCGG	chr12:125398683-125398946(-)$1	263	167	204	12.8599
GCCGCCGUCAGCUGUGCCGUCGCGCAGCACGCGCCGC	chr8:17941466-17941707(-)$1	241	179	216	11.4095
GCUACGAACGGGACCGGAGGAAGCAGCGGGAUGGAGG	chr7:99686488-99686804(+)$1	316	152	189	10.8392
UUGGGACAAUGUGAACGUAGUCGCCGCCGAUUCCCAC	chr15:89878265-89878481(+)$1	216	162	199	14.7923
CGGGGAGUCCAGGGCGCCGUCGCCGCCGCCUCCCGGC	chr19:1408199-1408477(+)$1	278	131	168	10.7005
AGGUCUGUGCCGGAGGGUUCUUGUUCAGGUAUACACU	chr2:85769648-85769932(+)$1	284	194	231	12.2859
UCGCCUUUUCUAACUGCGAGUGCUAAGGAAGAGGCGA	chr6:47445514-47445792(+)$1	278	42	79	14.9896
guuccggguucgagucccggcggagucgUAACGCUUU	chr1:94313074-94313317(+)$1	243	111	148	12.8517
GUGAGGAGCUCGGUCGCCGAAGCGGAGGGAGACUCUU	chr1:235491351-235491595(-)$1	244	125	162	12.1675
GACCCCUUCAAGUUCUAGUCAUGGUGAGUGGGGUUCC	chr12:49658766-49659008(+)$1	242	178	215	12.2947
CGGCGCGAUGGAGCAGCGAAAACGUGGUUGUAGAGUU	chr16:75018806-75019087(-)$1	281	176	213	10.9997
ucuagccauguucaaaagcacuuguacaguuguggaa	chr4:56963489-56963725(+)$1	236	188	225	9.8126
CGGAUCGUUGGGACUGCGGUCGUUAGUCUCCGGCGAG	chr9:91926024-91926276(+)$1	252	64	101	10.3691
CCUGCUCUCAGGUCUCGGACGCGCAGACCCAGCUGCU	chr17:43024913-43025181(-)$1	268	224	261	12.1965
ggAGGACUCGACUCGGUGGGAGCCGCUAGAGCCGGGC	chr10:129924495-129924745(-)$1	250	101	138	12.8558
gcggcggcgguggcggcgaaggccgaggcggugaguc	chr19:39833023-39833277(+)$1	254	163	200	12.0134
ugaacgcguccguucucgucugaucucggaagcuaag	chr10:108729712-108729950(+)$1	238	85	122	12.7504
GGGUGCUGCUUGUUGCCGAUGGGCUGCGAACGGGGCG	chr3:183353788-183354032(+)$1	244	167	204	11.4526
GGAUUGGAGUGAAGAGGGUAUCUGCUUGACAGUGGAU	chr16:30662130-30662417(+)$1	287	151	188	13.0564
GGCGGGCAGAGGCGCAGCUCCUGGGGUGUCAUCCGGC	chr8:145650730-145651010(-)$1	280	119	156	11.0086
CCGGCUGCCCGCCCAGUUGUUACUCAGGUGCGCUAGC	chr17:74733264-74733513(-)$1	249	86	123	10.3863
GCUCCGGGAAUGGUGGGCGGCGGUCGCCGGGUGGGGC	chr17:79894942-79895209(-)$1	267	111	148	10.2357
AGACGCCUAAACCGCGGCACUGCCCGGUUUGAGCGUA	chr22:38902069-38902317(-)$1	248	31	68	10.3787
UUCACCAAUCACGGUGCGCGUGUGGCUUGAGUAGGUG	chr1:109825592-109825852(-)$1	260	7	44	13.8502
GCAGCCGCACCAGAACCAGGCGAAGCUGGUGGUGGCG	chr4:17812498-17812803(+)$1	305	255	292	12.4190
gcggggccugggcggCGGAAGUGCGCAGCCGCGCGGC	chr1:894494-894738(-)$1	244	39	76	11.8317
UUCCAGAGCGUGGGGAGGGGCCUCCACCAAGGCGAGA	chr11:291207-291460(+)$1	253	121	158	12.8896
GUAGCGCGUGAGGAGGCAGAGGCCUCUGGGGUGGGAU	chr16:88729360-88729637(-)$1	277	64	101	13.7373
CACCCUCGGUACUUCGGUGGUUCggaggaggaggggg	chr2:20550435-20550706(-)$1	271	152	189	12.9136
GGACAGAGGGGCUGGGCCCAGGCAAAGCUUCUGUCGC	chr3:38206926-38207182(+)$1	256	131	168	11.9472
CGCGCCUGCUGCGAGAUGGCGAUCUUGGGCGCGGAAG	chr8:87354874-87355138(+)$1	264	171	208	12.4126
CAUCCGGCGGAGCUGGGGUCCCCGGGCUCCGUCCGGA	chr2:46926276-46926541(+)$1	265	127	164	13.5339
GGGGCACAGGCGAAGACUAAGGCGGCGCCGGGCCCCA	chr2:231577487-231577742(+)$1	255	168	205	12.1629
CGCGGCCGGCGUUGCGCCGCGGCGGAGGGUGGGCGCG	chr4:78078369-78078626(+)$1	257	63	100	12.7716
AACCUGUCUGAAGCAUCUCAGUGAUGCAAUCUCUGUG	chr17:2233478-2233744(-)$1	266	116	153	9.4080
GCGGCCGCUACGGCCCUGUAACAGGGCCAUGGAGAAG	chr6:166755853-166756149(-)$1	296	152	189	11.5851
GGGACGAACUGAGCCACGAGCGUGGCUUUGAGGGCCG	chr16:2205219-2205440(-)$1	221	145	182	14.8020
CGGAUCGUUGGGACUGCGGUCGUUAGUCUCCGGCGAG	chr9:91926080-91926310(+)$1	230	8	45	12.4959
gcggcggcagugguggcagcggcggcggGGGUGGGCG	chr10:101379907-101380260(-)$1	353	112	149	12.1231
GACGGUGUGCGUCGACGUAAGUGACGCGCAAGCCUGG	chr5:43121610-43121928(+)$1	318	4	41	11.9569
UGUGGUUGACUCCGUACUUUGGUCUGAGGCCUUCGGG	chr17:25621063-25621309(+)$1	246	154	191	11.3307

#DB
(((.(((((...(((((....)))))....)))))))	chr17:16284315-16284596(+)$1	1	35	72	11.7697
((.(((..(((((..((....))....)).)))..))	chr2:61765237-61765499(-)$1	1	152	189	13.5045
((((((((((((.(..(....)..).))))))))))(	chr13:92000235-92000474(+)$1	1	96	133	12.3655
(((((((..(((..(((....)))..))).)))).))	chr3:37284660-37284985(+)$1	1	140	177	13.4506
(...(((((..((((((....)))))).)))))...)	chr19:2270097-2270374(+)$1	1	127	164	12.6056
((((.(....(((((((....)))))))..).)))))	chr6:32095846-32096103(-)$1	1	35	72	11.8784
(((.(((.((((((((....))).))))).)))..))	chr4:56262028-56262277(+)$1	1	80	117	11.5238
(...((.(((((((.((....)).)))))))))))))	chr5:133707165-133707394(+)$1	1	186	223	13.7448
(((((..(((.(((.((....)).))))))...))))	chr11:64949279-64949544(+)$1	1	135	172	14.2780
(((((((((((((((((....)))))))..)))))))	chr12:125398683-125398946(-)$1	1	167	204	12.8599
((.((.((..(((((((....))))))))))))).))	chr8:17941466-17941707(-)$1	1	179	216	11.4095
.((((...((...(((..(....)..)))..))...)	chr7:99686488-99686804(+)$1	1	152	189	10.8392
.(((((....(((..((....)).)))....))))).	chr15:89878265-89878481(+)$1	1	162	199	14.7923
(.(((((.(...((((....))))...).))))).))	chr19:1408199-1408477(+)$1	1	131	168	10.7005
((...((((((.(((.(....).))).))))))..))	chr2:85769648-85769932(+)$1	1	194	231	12.2859
(((((((((((....((....))...)))))))))))	chr6:47445514-47445792(+)$1	1	42	79	14.9896
(....(((..(((.(((....))).))).........	chr1:94313074-94313317(+)$1	1	111	148	12.8517
((.((((((((..((((....))))...))).)))))	chr1:235491351-235491595(-)$1	1	125	162	12.1675
((((((((((....(((....))))))).)))))...	chr12:49658766-49659008(+)$1	1	178	215	12.2947
(((.((..((.(((.(((....))).))).))..)).	chr16:75018806-75019087(-)$1	1	176	213	10.9997
((((....(((.(((......))).)))....)))))	chr4:56963489-56963725(+)$1	1	188	225	9.8126
))).(((((((((((((....).))))).))))))).	chr9:91926024-91926276(+)$1	1	64	101	10.3691
(..(((....(((((((....)).))))).))).)).	chr17:43024913-43025181(-)$1	1	224	261	12.1965
...((.(((....((((....))))...)))))...)	chr10:129924495-129924745(-)$1	1	101	138	12.8558
(...((.((.(..((((....)))).).)).))...)	chr19:39833023-39833277(+)$1	1	163	200	12.0134
(....((.((((...((....))...)))).))..))	chr10:108729712-108729950(+)$1	1	85	122	12.7504
.((((((.(((((.(((....))).))))..).))))	chr3:183353788-183354032(+)$1	1	167	204	11.4526
(((((.(.((.(((.((....)).))).))..).)))	chr16:30662130-30662417(+)$1	1	151	188	13.0564
(..((((.(((((((..(....)..))))).))..))	chr8:145650730-145651010(-)$1	1	119	156	11.0086
((((((((.((((.(((....)))..)))).)).)))	chr17:74733264-74733513(-)$1	1	86	123	10.3863
((((((....((((((.(...).))))))..))))))	chr17:79894942-79895209(-)$1	1	111	148	10.2357
..((((.(((((((.(((...)))))))))).)))).	chr22:38902069-38902317(-)$1	1	31	68	10.3787
((((((..(((.(.(((....))).).)))...))))	chr1:109825592-109825852(-)$1	1	7	44	13.8502
((.((((((((((...(....)...))))).))))))	chr4:17812498-17812803(+)$1	1	255	292	12.4190
(((.(((.((.(((.(....)))).))))).)))(((	chr1:894494-894738(-)$1	1	39	76	11.8317
(((....((.(((((((....)))).)))..))..))	chr11:291207-291460(+)$1	1	121	158	12.8896
((..(((.(..((((((....)))))).).)))..))	chr16:88729360-88729637(-)$1	1	64	101	13.7373
(.(((((....((((((....))))))...))))).)	chr2:20550435-20550706(-)$1	1	152	189	12.9136
(((((((..((((..((....))..)))))))))).)	chr3:38206926-38207182(+)$1	1	131	168	11.9472
((((((.....((((((....)))))))))))))...	chr8:87354874-87355138(+)$1	1	171	208	12.4126
((((((((((((((.((....)).))))))).)))))	chr2:46926276-46926541(+)$1	1	127	164	13.5339
(((((.(.((((..(.(....))..)))).)))))).	chr2:231577487-231577742(+)$1	1	168	205	12.1629
(((((((.((.((.(((....))).)).)).))).))	chr4:78078369-78078626(+)$1	1	63	100	12.7716
((((...(.((.(((((.....)))))....)).)..	chr17:2233478-2233744(-)$1	1	116	153	9.4080
(((((..(((.(((((((...))))))).)))....)	chr6:166755853-166756149(-)$1	1	152	189	11.5851
.(((((..(((((((((....)))))))...))..))	chr16:2205219-2205440(-)$1	1	145	182	14.8020
(((.(((((((((((((....).))))).))))))).	chr9:91926080-91926310(+)$1	1	8	45	12.4959
(((.(.((..(.((.((....)).)).)..)).).))	chr10:101379907-101380260(-)$1	1	112	149	12.1231
...((((((((((.((....)))))))))..)))...	chr5:43121610-43121928(+)$1	1	4	41	11.9569
)))))..))(((.(.((....))).)))((((.((((	chr17:25621063-25621309(+)$1	1	154	191	11.3307

#PSSM
e : 0.21	f : 0.14	d : 0.12	c : 0.12	b : 0.10	h : 0.04	[ : 0.04	! : 0.04	" : 0.04	g : 0.04	E : 0.02	= : 0.02	: : 0.02	G : 0.02	i : 0.02	
e : 0.21	f : 0.18	d : 0.12	" : 0.10	c : 0.08	! : 0.06	[ : 0.04	# : 0.04	g : 0.04	E : 0.02	h : 0.02	b : 0.02	= : 0.02	G : 0.02	i : 0.02	
e : 0.25	f : 0.16	" : 0.12	d : 0.12	[ : 0.08	c : 0.06	! : 0.06	= : 0.04	# : 0.04	h : 0.02	g : 0.02	i : 0.02	
e : 0.25	[ : 0.12	d : 0.12	f : 0.10	" : 0.08	c : 0.06	# : 0.06	= : 0.04	g : 0.04	b : 0.04	h : 0.02	: : 0.02	! : 0.02	i : 0.02	
e : 0.25	c : 0.14	d : 0.10	b : 0.10	f : 0.10	g : 0.08	# : 0.08	= : 0.04	" : 0.04	[ : 0.02	a : 0.02	i : 0.02	
e : 0.19	c : 0.16	[ : 0.10	f : 0.10	d : 0.08	b : 0.08	g : 0.08	= : 0.04	! : 0.04	" : 0.04	# : 0.04	a : 0.02	2 : 0.02	
e : 0.14	! : 0.12	# : 0.12	c : 0.12	g : 0.08	b : 0.08	d : 0.06	[ : 0.06	f : 0.06	= : 0.04	" : 0.04	a : 0.04	$ : 0.02	2 : 0.02	
[ : 0.19	g : 0.14	! : 0.12	# : 0.12	b : 0.12	e : 0.08	c : 0.08	= : 0.04	" : 0.02	f : 0.02	d : 0.02	$ : 0.02	a : 0.02	
b : 0.19	c : 0.14	g : 0.14	! : 0.10	# : 0.10	e : 0.08	a : 0.06	d : 0.06	= : 0.04	[ : 0.04	f : 0.02	$ : 0.02	
c : 0.16	b : 0.16	g : 0.14	# : 0.12	d : 0.12	! : 0.10	" : 0.04	= : 0.04	e : 0.04	[ : 0.04	f : 0.02	$ : 0.02	
g : 0.19	c : 0.18	[ : 0.12	d : 0.10	e : 0.08	" : 0.06	# : 0.06	= : 0.04	! : 0.04	f : 0.04	a : 0.04	$ : 0.02	b : 0.02	
c : 0.18	g : 0.18	e : 0.12	f : 0.10	[ : 0.10	d : 0.10	" : 0.06	# : 0.06	b : 0.04	! : 0.04	= : 0.02	
g : 0.18	c : 0.18	e : 0.16	f : 0.10	! : 0.08	d : 0.08	b : 0.06	# : 0.06	[ : 0.04	" : 0.04	a : 0.02	
g : 0.16	c : 0.16	e : 0.12	[ : 0.12	! : 0.10	f : 0.10	d : 0.10	a : 0.04	# : 0.04	" : 0.04	b : 0.02	
c : 0.21	[ : 0.18	e : 0.12	f : 0.10	g : 0.10	d : 0.10	! : 0.08	" : 0.04	# : 0.02	a : 0.02	b : 0.02	
b : 0.25	c : 0.21	f : 0.10	g : 0.10	d : 0.10	e : 0.08	! : 0.04	[ : 0.04	o : 0.02	" : 0.02	a : 0.02	
b : 0.23	c : 0.18	a : 0.12	g : 0.10	f : 0.08	m : 0.08	d : 0.08	e : 0.04	! : 0.04	o : 0.02	[ : 0.02	
m : 0.84	c : 0.04	a : 0.04	! : 0.02	o : 0.02	n : 0.02	g : 0.02	
m : 0.88	l : 0.06	a : 0.02	o : 0.02	n : 0.02	
m : 0.90	l : 0.06	o : 0.02	n : 0.02	
m : 0.82	l : 0.06	c : 0.02	d : 0.02	o : 0.02	a : 0.02	n : 0.02	b : 0.02	
b : 0.25	c : 0.21	a : 0.14	g : 0.10	d : 0.10	f : 0.08	m : 0.06	e : 0.02	n : 0.02	
b : 0.23	c : 0.23	g : 0.12	d : 0.10	f : 0.08	] : 0.08	e : 0.04	a : 0.04	2 : 0.02	m : 0.02	3 : 0.02	
c : 0.23	] : 0.16	g : 0.12	f : 0.10	d : 0.10	e : 0.08	2 : 0.08	3 : 0.06	a : 0.04	4 : 0.02	
g : 0.18	] : 0.14	e : 0.12	2 : 0.12	f : 0.10	c : 0.10	d : 0.10	3 : 0.08	4 : 0.02	a : 0.02	b : 0.02	
g : 0.18	e : 0.16	c : 0.14	f : 0.10	3 : 0.10	] : 0.08	d : 0.08	2 : 0.06	b : 0.06	4 : 0.02	a : 0.02	
c : 0.19	g : 0.18	e : 0.14	d : 0.12	f : 0.10	3 : 0.06	] : 0.06	4 : 0.04	= : 0.04	b : 0.04	a : 0.02	
c : 0.19	g : 0.19	e : 0.12	d : 0.12	] : 0.10	4 : 0.06	3 : 0.06	= : 0.04	a : 0.04	f : 0.04	b : 0.02	
c : 0.18	d : 0.12	b : 0.10	e : 0.10	g : 0.10	] : 0.10	4 : 0.08	2 : 0.06	= : 0.04	f : 0.04	3 : 0.04	> : 0.02	a : 0.02	
2 : 0.16	] : 0.14	g : 0.12	c : 0.12	e : 0.10	4 : 0.08	b : 0.08	d : 0.06	= : 0.04	f : 0.04	3 : 0.04	> : 0.02	
c : 0.14	g : 0.14	] : 0.14	2 : 0.12	e : 0.10	3 : 0.06	b : 0.06	4 : 0.06	= : 0.04	d : 0.04	a : 0.04	f : 0.04	> : 0.02	
b : 0.25	e : 0.16	c : 0.16	] : 0.08	g : 0.08	f : 0.06	= : 0.04	d : 0.04	3 : 0.04	> : 0.02	4 : 0.02	a : 0.02	2 : 0.02	
b : 0.21	e : 0.19	c : 0.14	g : 0.08	d : 0.06	f : 0.06	= : 0.04	3 : 0.04	] : 0.04	h : 0.02	> : 0.02	2 : 0.02	a : 0.02	4 : 0.02	[ : 0.02	
e : 0.23	2 : 0.18	3 : 0.08	g : 0.08	] : 0.08	f : 0.08	d : 0.06	c : 0.06	= : 0.04	h : 0.02	b : 0.02	> : 0.02	4 : 0.02	a : 0.02	
e : 0.19	2 : 0.16	3 : 0.14	f : 0.12	] : 0.10	g : 0.06	d : 0.06	= : 0.04	b : 0.04	h : 0.02	> : 0.02	a : 0.02	4 : 0.02	
e : 0.25	f : 0.16	3 : 0.16	g : 0.08	b : 0.08	d : 0.08	c : 0.04	= : 0.04	] : 0.04	h : 0.02	> : 0.02	4 : 0.02	
e : 0.25	f : 0.18	d : 0.10	3 : 0.08	c : 0.06	: : 0.06	h : 0.04	g : 0.04	b : 0.04	] : 0.04	4 : 0.02	= : 0.02	> : 0.02	E : 0.02	2 : 0.02	

#score	612.0011774534399
#seq	50
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF844VZT_HNRNPU_UTR_m1_run2.txt

#BEAR
ggg!!bb!!ccc!!ccc[aqqqqqqqqa]ccc22ccc22b	chr3:15091848-15092097(-)$1	249	93	133	20.1226
GG:bbbbccc[ccc"""bbqqqqqqqqbb22cccccc]bb	chr12:109124206-109124496(-)$1	290	163	203	21.6283
!ccc[a[a[ffffff!!bbqqqqqqqqbb22ffffff]a]	chr16:67204990-67205240(+)$1	250	8	48	23.2304
!!bb[==========!!bbpppppppbb22==========	chr2:145270226-145270503(-)$1	277	155	195	17.6713
gggbb[bb[a[bb!!cccqqqqqqqqccc22bb]abb]bb	chr8:11665544-11665812(+)$1	268	10	50	19.5866
""bb$$$$$eeeee[ddddqqqqqqqqdddd]eeeee777	chr19:49843200-49843488(-)$1	288	159	199	16.9508
cccccc[ggggggg"""bbqqqqqqqqbb333ggggggg3	chr17:40853444-40853714(-)$1	270	199	239	22.5459
cccdddd"""a!!ffffffrrrrrrrrrffffff22a333	chr14:73924306-73924596(-)$1	290	43	83	15.0104

#otherMatches

#Seq PSSM
CAUCUGCAGUGUAGGUCUCCAUAGCUAGUGACACACAAAG	chr3:15091848-15092097(-)$1	249	93	133	20.1226
GGCCCCGCUGCGCCGAAAUGACUGAGGAUGAGGUCAGACG	chr12:109124206-109124496(-)$1	290	163	203	21.6283
UGGAGAGAAGGAGGGGCCAAUCCAAUCUGCACCCUCCCUG	chr16:67204990-67205240(+)$1	250	8	48	23.2304
AUGUAUCUAGGCUGAUCUAUUUGUUUUAUUUUGGUCUGGA	chr2:145270226-145270503(-)$1	277	155	195	17.6713
ccugagggauggagggggauguggaaccuaaucggcuguc	chr8:11665544-11665812(+)$1	268	10	50	19.5866
AGGCGGGAAUAGCUGCUACAAGUGGGGGUAGAGGCUGAGA	chr19:49843200-49843488(-)$1	288	159	199	16.9508
CCUGCUGUUUGGAAAGGGUGAGUUAGAAUAUGUUCCAAGG	chr17:40853444-40853714(-)$1	270	199	239	22.5459
UCCAAGGGAGGGGGCUCCUGGAGAGAUGAGGAGCAGCAGG	chr14:73924306-73924596(-)$1	290	43	83	15.0104

#DB
(((..((..(((..(((.(........).)))..)))..)	chr3:15091848-15092097(-)$1	1	93	133	20.1226
((.(((((((.(((...((........))..)))))).))	chr12:109124206-109124496(-)$1	1	163	203	21.6283
.(((.(.(.((((((..((........))..)))))).).	chr16:67204990-67205240(+)$1	1	8	48	23.2304
..((.((((((((((..((.......))..))))))))))	chr2:145270226-145270503(-)$1	1	155	195	17.6713
(((((.((.(.((..(((........)))..)).))).))	chr8:11665544-11665812(+)$1	1	10	50	19.5866
..((.....(((((.((((........)))).)))))...	chr19:49843200-49843488(-)$1	1	159	199	16.9508
((((((.(((((((...((........))...))))))).	chr17:40853444-40853714(-)$1	1	199	239	22.5459
(((((((...(..((((((.........))))))..)...	chr14:73924306-73924596(-)$1	1	43	83	15.0104

#PSSM
g : 0.25	! : 0.25	c : 0.25	G : 0.12	" : 0.12	
c : 0.37	g : 0.25	G : 0.12	! : 0.12	" : 0.12	
c : 0.37	g : 0.25	b : 0.25	: : 0.12	
b : 0.50	c : 0.25	! : 0.12	d : 0.12	
b : 0.25	[ : 0.25	! : 0.12	$ : 0.12	c : 0.12	d : 0.12	
b : 0.25	a : 0.12	= : 0.12	[ : 0.12	$ : 0.12	c : 0.12	d : 0.12	
b : 0.37	[ : 0.25	= : 0.12	$ : 0.12	d : 0.12	
! : 0.12	c : 0.12	a : 0.12	= : 0.12	b : 0.12	$ : 0.12	g : 0.12	" : 0.12	
[ : 0.25	! : 0.12	c : 0.12	= : 0.12	$ : 0.12	g : 0.12	" : 0.12	
c : 0.25	f : 0.12	= : 0.12	a : 0.12	e : 0.12	g : 0.12	" : 0.12	
[ : 0.25	c : 0.12	f : 0.12	= : 0.12	e : 0.12	g : 0.12	a : 0.12	
c : 0.25	f : 0.12	= : 0.12	b : 0.12	e : 0.12	g : 0.12	! : 0.12	
! : 0.25	c : 0.12	f : 0.12	= : 0.12	b : 0.12	e : 0.12	g : 0.12	
! : 0.25	f : 0.25	c : 0.12	= : 0.12	e : 0.12	g : 0.12	
" : 0.25	f : 0.25	c : 0.12	= : 0.12	! : 0.12	[ : 0.12	
c : 0.25	" : 0.25	! : 0.25	d : 0.12	f : 0.12	
c : 0.25	" : 0.25	! : 0.25	d : 0.12	f : 0.12	
b : 0.50	[ : 0.12	c : 0.12	d : 0.12	f : 0.12	
b : 0.50	a : 0.12	q : 0.12	d : 0.12	f : 0.12	
q : 0.75	p : 0.12	r : 0.12	
q : 0.75	p : 0.12	r : 0.12	
q : 0.75	p : 0.12	r : 0.12	
q : 0.75	p : 0.12	r : 0.12	
q : 0.75	p : 0.12	r : 0.12	
q : 0.75	p : 0.12	r : 0.12	
q : 0.75	p : 0.12	r : 0.12	
q : 0.62	b : 0.12	c : 0.12	r : 0.12	
b : 0.50	a : 0.12	c : 0.12	d : 0.12	r : 0.12	
b : 0.37	] : 0.12	2 : 0.12	c : 0.12	d : 0.12	f : 0.12	
2 : 0.50	c : 0.12	d : 0.12	3 : 0.12	f : 0.12	
2 : 0.37	c : 0.12	= : 0.12	d : 0.12	3 : 0.12	f : 0.12	
c : 0.25	f : 0.25	= : 0.12	b : 0.12	] : 0.12	3 : 0.12	
f : 0.25	2 : 0.12	c : 0.12	= : 0.12	b : 0.12	e : 0.12	g : 0.12	
f : 0.25	2 : 0.12	c : 0.12	= : 0.12	] : 0.12	e : 0.12	g : 0.12	
c : 0.25	f : 0.12	= : 0.12	a : 0.12	e : 0.12	g : 0.12	2 : 0.12	
c : 0.25	f : 0.12	= : 0.12	b : 0.12	e : 0.12	g : 0.12	2 : 0.12	
c : 0.25	f : 0.12	= : 0.12	b : 0.12	e : 0.12	g : 0.12	a : 0.12	
] : 0.37	2 : 0.12	= : 0.12	7 : 0.12	g : 0.12	3 : 0.12	
b : 0.25	2 : 0.12	a : 0.12	= : 0.12	7 : 0.12	g : 0.12	3 : 0.12	
b : 0.37	3 : 0.25	] : 0.12	= : 0.12	7 : 0.12	

#score	156.74666837573753
#seq	8
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_UTR_m3_run1.txt

#BEAR
[eeeee[bb!!bbmmmmbbbb]eeeeedd	chr2:27435306-27435543(+)$1	237	194	223	8.8501
b[a[ffffff[ccclllcccffffff]a]	chr2:61405213-61405439(+)$1	226	84	113	9.8089
ff[ggggggg[bbmmmmbb]gggggggff	chr6:32938734-32939010(+)$1	276	81	110	11.0998
dd[bb[gggggggmmmmggggggg]bb]d	chr22:20073375-20073639(+)$1	264	11	40	10.9241
ccccc[bb[ddddmmmmdddd]bb]ccc2	chr2:190648858-190649104(-)$1	246	33	62	8.7913
gggggggbb[cccmmmmccc]bbiiiiii	chr8:103424328-103424631(-)$1	303	237	266	11.1851
eee[a[ccc[cccmmmmccc]ccc22a]e	chr17:80190016-80190248(+)$1	232	86	115	10.9610
ddd!!a[ffffffmmmmffffffa]dddd	chr6:56334845-56335176(-)$1	331	103	132	10.7623
ggg[a[gggggggmmmmgggggggagggg	chr17:80197785-80198011(+)$1	226	26	55	12.0106
:===========lll===========bb[	chr20:361884-362138(+)$1	254	155	184	8.5439
b[eeeee[eeeeemmmmeeeee]eeeee]	chr11:18034129-18034427(-)$1	298	38	67	8.7557
!bb[bbgggggggmmmmggggggg]bb]b	chr19:2270133-2270422(+)$1	289	95	124	10.0096
gggggg[bb[aooooooa]bb]ggggggg	chr17:28444058-28444277(+)$1	219	160	189	9.5942
eccc[a[ffffffnnnnnffffff]accc	chr3:49058685-49058903(-)$1	218	152	181	9.4905
]eeeee:ffffffmmmmffffffccc[a[	chr3:48470635-48470946(-)$1	311	102	131	9.1630
bccca[gggggggnnnnnggggggg]aee	chr17:79860502-79860766(-)$1	264	94	123	9.2338
dd[bb[gggggggmmmmggggggg]bb]d	chr22:20073193-20073443(+)$1	250	193	222	10.9241
dd####ccc[cccmmmmccc]cccdddd4	chr3:49058440-49058713(-)$1	273	195	224	10.0597
a!!ccc[ffffffooooooffffff]ccc	chr3:33481442-33481772(-)$1	330	43	72	9.9070
gggggggfffffflllffffff]gggggg	chr3:184080521-184080770(+)$1	249	162	191	10.3800
eeeee[bb!!cccmmmmccc22bbeeeee	chr7:150777600-150777857(-)$1	257	202	231	9.8972
ee!!eeeee[cccmmmmccc]eeeeeeee	chr22:46508660-46508915(+)$1	255	78	107	10.2339
2===========4444=============	chr2:242707714-242707989(+)$1	275	102	131	9.2207
gggggg####a[ammmma]a333gggggg	chr3:49050193-49050494(+)$1	301	9	38	11.5174
gggggg!!eeeeemmmmeeeee22ggggg	chr19:41770840-41771087(+)$1	247	76	105	10.1120
fffff[ccc[cccmmmmccccccffffff	chr10:88516563-88516873(+)$1	310	210	239	11.0320
f[fffffffffffflllffffff]fffff	chr16:89787402-89787640(+)$1	238	92	121	9.4443
eeeee[ggggggglllggggggg]eeeee	chr1:205418898-205419147(-)$1	249	215	244	9.7102
g[ffffffeeeeemmmmeeeee22fffff	chr9:86584628-86584851(-)$1	223	118	147	9.2374
ee[eeeee!!cccmmmmccc4444eeeee	chr3:49058327-49058567(-)$1	240	120	149	10.3074
%a[===========lll===========]	chr20:57467338-57467615(+)$1	277	179	208	10.5028
cc[ccc[aeeeeellleeeee]a]ccc]c	chr2:20549798-20550128(-)$1	330	19	48	8.6666
dd$$$$$ffffffmmmmffffff333ddd	chr6:86352558-86352822(-)$1	264	135	164	9.8265
eccc[a[ffffffnnnnnffffff]accc	chr3:49058551-49058770(-)$1	219	19	48	9.4905
::ggggggg[ccclllccc333ggggggg	chr17:7082221-7082570(-)$1	349	281	310	9.2003
:ggggggg[ddddmmmmdddd]ggggggg	chr17:7477044-7477302(+)$1	258	108	137	9.6319
ffaggggggg[bbnnnnnbb]ggggggg]	chr20:361771-362025(+)$1	254	132	161	8.8605
[dddd!!ccc[bbmmmmbb]ccc22dddd	chr22:46509341-46509591(+)$1	250	15	44	8.8336
gggggg[ffffffmmmmffffffgggggg	chr20:62572718-62572941(-)$1	223	185	214	12.2111
ccc]bb:ffffffmmmmffffffgggggg	chr19:46522370-46522671(+)$1	301	224	253	9.8684
gggggg[bb[aooooooa]bb]ggggggg	chr17:28444041-28444258(+)$1	217	177	206	9.5942
ea[bb[gggggggmmmmggggggg333bb	chr11:706529-706791(+)$1	262	202	231	10.8875
ffffffa[cccbbmmmmbb]ccc]a]fff	chr17:7477142-7477408(+)$1	266	60	89	9.6474
:iiiiiiiiicccmmmmccc333iiiiii	chr1:27320160-27320412(+)$1	252	119	148	11.1998
b[ccc####cccnnnnnccc4444ccc]b	chr16:28875588-28875828(+)$1	240	19	48	8.0081
eeeee[bb[ddddmmmmdddd]bb]eeee	chr12:46751963-46752208(-)$1	245	83	112	8.7084
ffffff[a!!cccmmmmccc22affffff	chr17:74380818-74381068(+)$1	250	5	34	10.9429
dddd[a[ggggggglllggggggg]a]dd	chr7:5569512-5569746(-)$1	234	194	223	9.6337
!!ffffff[a[bbmmmmbb]affffff22	chr17:74380188-74380434(+)$1	246	142	171	9.6783
dda[bb[ffffffooooooffffff]bb]	chr13:113863734-113864008(+)$1	274	164	193	8.8583
c[ccca[bb[cccmmmmccc22bb]a]cc	chr20:62331308-62331613(-)$1	305	16	45	10.8001
!!bbffffff!!ammmma22ffffff]bb	chr12:122237933-122238172(-)$1	239	141	170	9.3393
ffffff[ffffffmmmmffffffffffff	chr13:113863080-113863323(+)$1	243	211	240	11.1879

#otherMatches

#Seq PSSM
UGCAGGCCUUCGGCGCCCCAGUCCUGCCG	chr2:27435306-27435543(+)$1	237	194	223	8.8501
CUCUGCCCUGCGCCUCUGGCCGGGGCUGU	chr2:61405213-61405439(+)$1	226	84	113	9.8089
CUGAGAGGCGGAUACGGGUGUGCCUUUGG	chr6:32938734-32939010(+)$1	276	81	110	11.0998
CGCGCCCGGGUCUCAGCGGACUUGUGCAU	chr22:20073375-20073639(+)$1	264	11	40	10.9241
GCCUGAGGGCGUGUAUCCGCGGCCGUAGC	chr2:190648858-190649104(-)$1	246	33	62	8.7913
GGGCUGGCGGGUCGGCGGGCGCGGGGGGA	chr8:103424328-103424631(-)$1	303	237	266	11.1851
GCUGGAGUCAGUUAGGUAACAGGCCACGG	chr17:80190016-80190248(+)$1	232	86	115	10.9610
AACCAGUCGCUUGGAGAUGAGCGCAGUUG	chr6:56334845-56335176(-)$1	331	103	132	10.7623
CCUGCGUGGCUGGGAGCCCGGUCAGAGGC	chr17:80197785-80198011(+)$1	226	26	55	12.0106
CGCGGCCCCGCGGAGCGUGGGGUCGCCCG	chr20:361884-362138(+)$1	254	155	184	8.5439
CGGGCUCUGGGUUGAAGGAUCCUGGGCUg	chr11:18034129-18034427(-)$1	298	38	67	8.7557
GCGGGGUCGGCCUUGGGGGGCUGGUCCGC	chr19:2270133-2270422(+)$1	289	95	124	10.0096
AGGGGCAGUGUGAAGAGAGACAGUUCCUG	chr17:28444058-28444277(+)$1	219	160	189	9.5942
AGUCGCUGGCCCCCGCGCGGGGUUUGGGC	chr3:49058685-49058903(-)$1	218	152	181	9.4905
GUUCCCGGCGGUGGCAGCGCCGCGCGGGA	chr3:48470635-48470946(-)$1	311	102	131	9.1630
GGACGGUGGGGGCGGGGGGCCCCCAGCGG	chr17:79860502-79860766(-)$1	264	94	123	9.2338
CGCGCCCGGGUCUCAGCGGACUUGUGCAU	chr22:20073193-20073443(+)$1	250	193	222	10.9241
ACAAAGGCCACCGAGCGCGGGGGUGUCCC	chr3:49058440-49058713(-)$1	273	195	224	10.0597
GUGUGGUCCUCGGAGCGGCCCGAGGUCCA	chr3:33481442-33481772(-)$1	330	43	72	9.9070
CUGGACGGAUCCGGCUCGGGUUACGUCCA	chr3:184080521-184080770(+)$1	249	162	191	10.3800
CGCCGACUCCGCGCCAUCGCAAAGCGGUG	chr7:150777600-150777857(-)$1	257	202	231	9.8972
GGAACCCUGGCUGGGAGCGGGCAGGGCCA	chr22:46508660-46508915(+)$1	255	78	107	10.2339
GUGGGCAGCGGGGGCACGGGCAGGACCAC	chr2:242707714-242707989(+)$1	275	102	131	9.2207
UGGGGAAGGUCGUGUCAAGGUUGUCCCCA	chr3:49050193-49050494(+)$1	301	9	38	11.5174
CCUCUGGGUUUCGGAGGUGAGGGACGGGG	chr19:41770840-41771087(+)$1	247	76	105	10.1120
GCCGGAGCCAGGGGCUGCCCGGCCCGGCC	chr10:88516563-88516873(+)$1	310	210	239	11.0320
UCUUCGCCGUCUUGAGACGGGGCUGGCGA	chr16:89787402-89787640(+)$1	238	92	121	9.4443
UCUGCCUAGAGUCCAUGGCUUUAUGCAGG	chr1:205418898-205419147(-)$1	249	215	244	9.7102
UUGUUGUUUUUAGAUAACUAAAUCGACAA	chr9:86584628-86584851(-)$1	223	118	147	9.2374
CGCGCUUCCCUCCUGACGGAUUCCGAAGC	chr3:49058327-49058567(-)$1	240	120	149	10.3074
GUGGGGGGGCUGGUGACAUCAGCCCCUCG	chr20:57467338-57467615(+)$1	277	179	208	10.5028
GGGGCCGCCGCCUCGGGGGCGUGGGGCGC	chr2:20549798-20550128(-)$1	330	19	48	8.6666
GGGAGCGCGCUCGGAGGCGAGUGGAACUG	chr6:86352558-86352822(-)$1	264	135	164	9.8265
AGUCGCUGGCCCCCGCGCGGGGUUUGGGC	chr3:49058551-49058770(-)$1	219	19	48	9.4905
gagcucaggaguuugagacaagccugggc	chr17:7082221-7082570(-)$1	349	281	310	9.2003
GUGGGGGGAAGGGGAUGUCCUACCCUCCG	chr17:7477044-7477302(+)$1	258	108	137	9.6319
GUCUGCGUGUUGCCGCGUGUUACACGCAC	chr20:361771-362025(+)$1	254	132	161	8.8605
CUCUGUACCuggggaaacugaggcccaga	chr22:46509341-46509591(+)$1	250	15	44	8.8336
CGCCUUUGCCUGACAGCUCAGGUAGGGCG	chr20:62572718-62572941(-)$1	223	185	214	12.2111
GUUGGACCUCAGGGCUCCCUGAGCCACAC	chr19:46522370-46522671(+)$1	301	224	253	9.8684
AGGGGCAGUGUGAAGAGAGACAGUUCCUG	chr17:28444041-28444258(+)$1	217	177	206	9.5942
CCGGAGCCAGGAGGCACUUCCUGGGUGUC	chr11:706529-706791(+)$1	262	202	231	10.8875
ACUUCCAGCGCGCUGGUGCUGCGGUGGGA	chr17:7477142-7477408(+)$1	266	60	89	9.6474
GCCGGGCUGCCGCAUCAGCGCCUGCGGCC	chr1:27320160-27320412(+)$1	252	119	148	11.1998
UGAGUCCUGCUUGGCAGAAGAGAAACUGA	chr16:28875588-28875828(+)$1	240	19	48	8.0081
GUAUUAACUUUGUGUAUAUAGUGUAAAUA	chr12:46751963-46752208(-)$1	245	83	112	8.7084
CGUUCCGCCCCAGGCCACUGUAGGGAACG	chr17:74380818-74381068(+)$1	250	5	34	10.9429
CCCGGCGCUGUUUGAACCGGGCGGAGGCG	chr7:5569512-5569746(-)$1	234	194	223	9.6337
UCGCUCCGACACGAGUUCGCGCGGAGCCC	chr17:74380188-74380434(+)$1	246	142	171	9.6783
ggcggcggcgcucggggcggggcgcggcg	chr13:113863734-113864008(+)$1	274	164	193	8.8583
CAGCCCGGCUGGCCCAGGCCCUGCAGCGG	chr20:62331308-62331613(-)$1	305	16	45	10.8001
CCGGGGUUGAACCUUCUGACUCAGCCAcc	chr12:122237933-122238172(-)$1	239	141	170	9.3393
CCAGGCCGCGGAGGACCCUCCGCGCCUGG	chr13:113863080-113863323(+)$1	243	211	240	11.1879

#DB
.(((((.((..((....)))).)))))))	chr2:27435306-27435543(+)$1	1	194	223	8.8501
(.(.((((((.(((...))))))))).).	chr2:61405213-61405439(+)$1	1	84	113	9.8089
((.(((((((.((....)).)))))))))	chr6:32938734-32939010(+)$1	1	81	110	11.0998
((.((.(((((((....))))))).)).)	chr22:20073375-20073639(+)$1	1	11	40	10.9241
(((((.((.((((....)))).)).))).	chr2:190648858-190649104(-)$1	1	33	62	8.7913
)))))))((.(((....))).))((((((	chr8:103424328-103424631(-)$1	1	237	266	11.1851
(((.(.(((.(((....))).)))..).)	chr17:80190016-80190248(+)$1	1	86	115	10.9610
(((..(.((((((....))))))).))))	chr6:56334845-56335176(-)$1	1	103	132	10.7623
(((.(.(((((((....))))))))))))	chr17:80197785-80198011(+)$1	1	26	55	12.0106
.(((((((((((...)))))))))))((.	chr20:361884-362138(+)$1	1	155	184	8.5439
(.(((((.(((((....))))).))))).	chr11:18034129-18034427(-)$1	1	38	67	8.7557
.((.(((((((((....))))))).)).)	chr19:2270133-2270422(+)$1	1	95	124	10.0096
((((((.((.(......).)).)))))))	chr17:28444058-28444277(+)$1	1	160	189	9.5942
((((.(.((((((.....)))))).))))	chr3:49058685-49058903(-)$1	1	152	181	9.4905
.))))).((((((....))))))(((.(.	chr3:48470635-48470946(-)$1	1	102	131	9.1630
))))(.(((((((.....))))))).)((	chr17:79860502-79860766(-)$1	1	94	123	9.2338
((.((.(((((((....))))))).)).)	chr22:20073193-20073443(+)$1	1	193	222	10.9241
((....(((.(((....))).))))))).	chr3:49058440-49058713(-)$1	1	195	224	10.0597
(..(((.((((((......)))))).)))	chr3:33481442-33481772(-)$1	1	43	72	9.9070
(((((((((((((...)))))).))))))	chr3:184080521-184080770(+)$1	1	162	191	10.3800
(((((.((..(((....)))..)))))))	chr7:150777600-150777857(-)$1	1	202	231	9.8972
((..(((((.(((....))).))))))))	chr22:46508660-46508915(+)$1	1	78	107	10.2339
.)))))))))))....)))))))))))))	chr2:242707714-242707989(+)$1	1	102	131	9.2207
((((((....(.(....).)...))))))	chr3:49050193-49050494(+)$1	1	9	38	11.5174
((((((..(((((....)))))..)))))	chr19:41770840-41771087(+)$1	1	76	105	10.1120
(((((.(((.(((....))))))))))))	chr10:88516563-88516873(+)$1	1	210	239	11.0320
(.((((((((((((...)))))).)))))	chr16:89787402-89787640(+)$1	1	92	121	9.4443
(((((.(((((((...))))))).)))))	chr1:205418898-205419147(-)$1	1	215	244	9.7102
(.(((((((((((....)))))..)))))	chr9:86584628-86584851(-)$1	1	118	147	9.2374
((.(((((..(((....)))....)))))	chr3:49058327-49058567(-)$1	1	120	149	10.3074
.(.(((((((((((...))))))))))).	chr20:57467338-57467615(+)$1	1	179	208	10.5028
((.(((.((((((...))))).).))).)	chr2:20549798-20550128(-)$1	1	19	48	8.6666
((.....((((((....))))))...)))	chr6:86352558-86352822(-)$1	1	135	164	9.8265
((((.(.((((((.....)))))).))))	chr3:49058551-49058770(-)$1	1	19	48	9.4905
..(((((((.(((...)))...)))))))	chr17:7082221-7082570(-)$1	1	281	310	9.2003
.(((((((.((((....)))).)))))))	chr17:7477044-7477302(+)$1	1	108	137	9.6319
((((((((((.((.....)).))))))).	chr20:361771-362025(+)$1	1	132	161	8.8605
.((((..(((.((....)).)))..))))	chr22:46509341-46509591(+)$1	1	15	44	8.8336
((((((.((((((....))))))))))))	chr20:62572718-62572941(-)$1	1	185	214	12.2111
))).)).((((((....))))))((((((	chr19:46522370-46522671(+)$1	1	224	253	9.8684
((((((.((.(......).)).)))))))	chr17:28444041-28444258(+)$1	1	177	206	9.5942
((.((.(((((((....)))))))...))	chr11:706529-706791(+)$1	1	202	231	10.8875
(((((((.(((((....)).))).).)))	chr17:7477142-7477408(+)$1	1	60	89	9.6474
.((((((((((((....)))...))))))	chr1:27320160-27320412(+)$1	1	119	148	11.1998
(.(((....(((.....)))....))).)	chr16:28875588-28875828(+)$1	1	19	48	8.0081
(((((.((.((((....)))).)).))))	chr12:46751963-46752208(-)$1	1	83	112	8.7084
((((((.(..(((....)))..)))))))	chr17:74380818-74381068(+)$1	1	5	34	10.9429
((((.(.(((((((...))))))).).))	chr7:5569512-5569746(-)$1	1	194	223	9.6337
..((((((.(.((....)).)))))))..	chr17:74380188-74380434(+)$1	1	142	171	9.6783
(((.((.((((((......)))))).)).	chr13:113863734-113864008(+)$1	1	164	193	8.8583
(.((((.((.(((....)))..)).).))	chr20:62331308-62331613(-)$1	1	16	45	10.8001
..((((((((..(....)..)))))).))	chr12:122237933-122238172(-)$1	1	141	170	9.3393
((((((.((((((....))))))))))))	chr13:113863080-113863323(+)$1	1	211	240	11.1879

#PSSM
g : 0.16	e : 0.16	f : 0.13	d : 0.13	b : 0.07	c : 0.07	: : 0.07	! : 0.05	[ : 0.03	] : 0.01	a : 0.01	2 : 0.01	% : 0.01	
g : 0.16	e : 0.15	d : 0.15	[ : 0.11	f : 0.11	c : 0.11	! : 0.05	= : 0.03	a : 0.03	b : 0.01	: : 0.01	i : 0.01	
g : 0.18	e : 0.13	[ : 0.13	c : 0.13	f : 0.13	a : 0.05	d : 0.05	= : 0.03	b : 0.03	! : 0.03	# : 0.01	$ : 0.01	i : 0.01	
g : 0.20	c : 0.15	e : 0.13	f : 0.13	[ : 0.09	b : 0.07	= : 0.05	! : 0.03	d : 0.03	# : 0.01	$ : 0.01	] : 0.01	i : 0.01	
g : 0.20	f : 0.16	e : 0.15	b : 0.11	c : 0.09	a : 0.05	= : 0.05	[ : 0.05	! : 0.01	# : 0.01	$ : 0.01	d : 0.01	i : 0.01	
g : 0.20	[ : 0.20	f : 0.15	e : 0.09	a : 0.09	= : 0.05	b : 0.05	# : 0.03	c : 0.03	$ : 0.01	! : 0.01	i : 0.01	
[ : 0.26	g : 0.24	f : 0.09	b : 0.05	c : 0.05	= : 0.05	e : 0.05	: : 0.03	# : 0.03	! : 0.03	$ : 0.01	a : 0.01	i : 0.01	
f : 0.30	g : 0.22	b : 0.15	c : 0.07	= : 0.05	[ : 0.03	e : 0.03	# : 0.03	a : 0.03	! : 0.01	i : 0.01	
f : 0.26	g : 0.20	b : 0.09	c : 0.09	e : 0.09	[ : 0.07	= : 0.05	! : 0.05	# : 0.03	i : 0.01	
f : 0.26	g : 0.18	[ : 0.16	! : 0.07	e : 0.07	d : 0.05	= : 0.05	c : 0.05	# : 0.01	i : 0.01	a : 0.01	
c : 0.24	f : 0.22	g : 0.15	[ : 0.09	e : 0.07	d : 0.05	= : 0.05	a : 0.05	! : 0.03	
c : 0.24	f : 0.22	g : 0.15	b : 0.11	e : 0.07	d : 0.05	= : 0.05	o : 0.03	[ : 0.01	! : 0.01	
c : 0.22	f : 0.22	g : 0.15	b : 0.11	e : 0.07	d : 0.05	o : 0.03	a : 0.03	l : 0.01	4 : 0.01	= : 0.01	n : 0.01	
m : 0.64	l : 0.09	n : 0.09	o : 0.07	c : 0.01	4 : 0.01	f : 0.01	= : 0.01	g : 0.01	
m : 0.64	l : 0.16	n : 0.09	o : 0.07	4 : 0.01	
m : 0.64	l : 0.15	n : 0.09	o : 0.07	= : 0.01	4 : 0.01	
m : 0.64	n : 0.09	l : 0.07	o : 0.07	= : 0.03	f : 0.01	g : 0.01	e : 0.01	c : 0.01	
c : 0.24	f : 0.15	g : 0.13	b : 0.09	e : 0.07	a : 0.07	n : 0.07	d : 0.05	= : 0.05	o : 0.03	
c : 0.24	f : 0.18	g : 0.15	b : 0.11	e : 0.07	d : 0.05	= : 0.05	] : 0.05	o : 0.03	2 : 0.01	
c : 0.22	f : 0.22	g : 0.15	b : 0.07	] : 0.07	e : 0.07	d : 0.05	= : 0.05	a : 0.01	3 : 0.01	2 : 0.01	
f : 0.26	g : 0.16	] : 0.09	e : 0.07	b : 0.05	d : 0.05	= : 0.05	2 : 0.05	3 : 0.05	c : 0.05	4 : 0.03	a : 0.01	
f : 0.28	g : 0.18	] : 0.13	c : 0.09	e : 0.07	= : 0.05	2 : 0.05	3 : 0.05	4 : 0.03	b : 0.01	
f : 0.26	g : 0.26	b : 0.09	c : 0.09	= : 0.05	e : 0.03	] : 0.03	3 : 0.03	2 : 0.03	4 : 0.03	a : 0.03	
g : 0.32	f : 0.18	b : 0.07	] : 0.07	e : 0.05	c : 0.05	= : 0.05	2 : 0.05	i : 0.03	4 : 0.03	a : 0.01	3 : 0.01	
g : 0.22	f : 0.18	] : 0.18	e : 0.11	= : 0.05	c : 0.05	i : 0.03	2 : 0.03	a : 0.03	3 : 0.03	d : 0.01	
g : 0.22	f : 0.15	e : 0.13	c : 0.07	a : 0.07	] : 0.07	b : 0.05	d : 0.05	= : 0.05	i : 0.03	3 : 0.03	2 : 0.01	
g : 0.22	e : 0.13	f : 0.13	c : 0.11	b : 0.09	] : 0.07	d : 0.07	i : 0.03	a : 0.03	= : 0.03	[ : 0.01	3 : 0.01	
g : 0.20	f : 0.13	e : 0.13	d : 0.11	] : 0.11	c : 0.09	b : 0.07	a : 0.03	i : 0.03	= : 0.03	2 : 0.01	
g : 0.18	d : 0.13	f : 0.13	e : 0.13	] : 0.09	c : 0.09	b : 0.07	2 : 0.03	i : 0.03	[ : 0.03	4 : 0.01	= : 0.01	

#score	526.7478218285586
#seq	53
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_CDS_m1_run2.txt

#BEAR
""ccctttttttttttccc22cc	chr12:107364958-107365210(+)$1	252	186	209	18.8476
ffffffssssssssssffffff4	chr12:11174412-11174679(-)$1	267	171	194	14.6103
ii[bbtttttttttttbbiiiii	chr12:108936504-108936798(-)$1	294	232	255	18.2568
eeeeewwwwwwwwwwwwwweeee	chr4:95376455-95376733(+)$1	278	80	103	16.9846
d[cccrrrrrrrrrccc]dddd]	chr3:169888898-169889231(-)$1	333	9	32	9.7533
ffffwwwwwwwwwwwwwwfffff	chr4:68376610-68376964(-)$1	354	197	220	16.4782
yyyyyyyyyyyyyyyydddd333	chr3:171851284-171851547(+)$1	263	116	139	14.4506
hhhhhttttttttttthhhhhhh	chr4:113189445-113189774(+)$1	329	118	141	16.8519
eeeeevvvvvvvvvvvvveeeee	chr7:11150829-11151078(+)$1	249	42	65	16.9060
gg[cccsssssssssscccgggg	chr13:96251562-96251942(-)$1	380	243	266	16.0283
eeeeesssssssssseeeeeddd	chr17:65358885-65359192(-)$1	307	96	119	14.2892
###bbuuuuuuuuuuuubb4444	chr2:160253480-160253821(-)$1	341	50	73	17.6305
[dddduuuuuuuuuuuudddd]b	chr18:12986735-12986996(+)$1	261	105	128	17.9085
ccc[bbssssssssssbb]ccc3	chr14:75290772-75291076(+)$1	304	159	182	14.5004
ggggggssssssssssggggggg	chr1:150318507-150318813(+)$1	306	232	255	15.5514
gggggtttttttttttggggggg	chr17:25634665-25634888(+)$1	223	11	34	19.1872
eeeeesssssssssseeeeeiii	chr2:159389847-159390115(+)$1	268	110	133	14.9523
gggggtttttttttttggggggg	chr14:50298512-50298878(-)$1	366	266	289	19.1872
:ddddtttttttttttdddd:hh	chr1:215754225-215754485(+)$1	260	198	221	15.8404
f!!cccssssssssssccc22ff	chr2:242591178-242591472(+)$1	294	189	212	15.4143
[ddddrrrrrrrrrdddd]ccc]	chr3:119180592-119180915(-)$1	323	76	99	9.4481
b[cccvvvvvvvvvvvvvccc]b	chr9:102888684-102889017(+)$1	333	300	323	16.8818
"eeeeerrrrrrrrreeeeeccc	chr4:187513768-187514021(-)$1	253	59	82	10.5137
=====yyyyyyyyyyyyyyyy==	chr11:14535769-14536078(-)$1	309	15	38	15.3700
gggggxxxxxxxxxxxxxxxggg	chr2:181851949-181852217(+)$1	268	228	251	13.3392
eeeeettttttttttteeeee33	chr2:15747093-15747442(+)$1	349	186	209	19.1811
[ddddssssssssssddddbb33	chr6:139238598-139238846(-)$1	248	130	153	14.0124
ffffftttttttttttffffff:	chr6:91254237-91254529(-)$1	292	15	38	17.2537
d!!ddddrrrrrrrrrdddd22d	chr14:58734041-58734338(-)$1	297	31	54	9.4919
gggggggrrrrrrrrrggggggg	chr10:64952799-64953076(-)$1	277	52	75	10.3006
e[ccctttttttttttccceeee	chr5:115238576-115238984(+)$1	408	130	153	19.0499
hhhhhhsssssssssshhhhhhh	chr17:62510448-62510709(+)$1	261	95	118	12.9745
:eeeeesssssssssseeeee::	chr6:168313955-168314239(+)$1	284	54	77	12.6380
ff!!cccrrrrrrrrrccc22ff	chr20:44707946-44708202(-)$1	256	179	202	10.2863
#eeeeesssssssssseeeee44	chr20:42087683-42087916(+)$1	233	137	160	15.5757
ffffftttttttttttffffffe	chr6:160174255-160174600(+)$1	345	278	301	18.0521
fffffvvvvvvvvvvvvvfffff	chr12:112525214-112525613(-)$1	399	201	224	16.3413
##cccuuuuuuuuuuuuccc555	chr15:62160025-62160316(-)$1	291	135	158	16.7093
:eeeeesssssssssseeeee::	chr21:40670111-40670449(-)$1	338	15	38	12.6380
ggg[cccrrrrrrrrrccc]ggg	chr11:28143523-28143798(+)$1	275	156	179	11.0643
[eeeeesssssssssseeeeeee	chr19:30461923-30462205(+)$1	282	83	106	15.4434
d!!bbwwwwwwwwwwwwwwbb22	chr2:109102760-109103006(+)$1	246	110	133	15.9829
eee[attttttttttta]eeeee	chr20:47589559-47589846(+)$1	287	219	242	18.7544
hh!!attttttttttta22hhhh	chr3:123671298-123671654(-)$1	356	189	212	17.3828
&&ccctttttttttttccc6666	chr5:130785620-130786023(-)$1	403	206	229	16.1054
"""cccssssssssssccc333d	chr22:44340375-44340686(+)$1	311	168	191	15.7952
ggggggssssssssssggggggg	chr22:36334721-36335027(-)$1	306	262	285	15.5514
=====uuuuuuuuuuuu======	chr2:160619375-160619652(+)$1	277	238	261	19.0249
eeeeeesssssssssseeeee]e	chr1:201828017-201828298(+)$1	281	44	67	15.4644
gggggtttttttttttggggggg	chr3:179092840-179093117(+)$1	277	68	91	19.1872
ffffffssssssssssffffff:	chr8:42914053-42914356(+)$1	303	74	97	13.6955
=[ddddrrrrrrrrrdddd]===	chr12:100955406-100955774(+)$1	368	157	180	10.2440

#otherMatches

#Seq PSSM
AAAGAAGAAAGACAAAUCUGACU	chr12:107364958-107365210(+)$1	252	186	209	18.8476
CAAGGUCCAUAUAAAAGCUUUGC	chr12:11174412-11174679(-)$1	267	171	194	14.6103
uccuccucccucucccgagaggu	chr12:108936504-108936798(-)$1	294	232	255	18.2568
GUAAGUAAACUUUACAAAUUUUA	chr4:95376455-95376733(+)$1	278	80	103	16.9846
GAAGACCAUCUACAUCUCCCACA	chr3:169888898-169889231(-)$1	333	9	32	9.7533
GGGGAACUCACUUUUCUGCCCCA	chr4:68376610-68376964(-)$1	354	197	220	16.4782
UUUUCUGUGUGUGUCUGCAUGUA	chr3:171851284-171851547(+)$1	263	116	139	14.4506
AGGGUAAAAUUGUGUGACCUUGU	chr4:113189445-113189774(+)$1	329	118	141	16.8519
UGUUGAAGUUGAAAUAUACAAUA	chr7:11150829-11151078(+)$1	249	42	65	16.9060
CUUAUUUUUCCUUGUUAAUAGAA	chr13:96251562-96251942(-)$1	380	243	266	16.0283
GAUAAUAACUAAUAUUUAUUGCU	chr17:65358885-65359192(-)$1	307	96	119	14.2892
UUUUCUUUAAAAUUUCUGAUAUA	chr2:160253480-160253821(-)$1	341	50	73	17.6305
uccugucuucauuguuuCAGGUA	chr18:12986735-12986996(+)$1	261	105	128	17.9085
UCGAGCUUCUCUCUGUGUACGAU	chr14:75290772-75291076(+)$1	304	159	182	14.5004
UGCUUCUGUGUUUUUUGGAGUAG	chr1:150318507-150318813(+)$1	306	232	255	15.5514
UCUUUACAAAUCAUAAGAAGAAC	chr17:25634665-25634888(+)$1	223	11	34	19.1872
AUCCCUGAGUACAUUGGGAUGAC	chr2:159389847-159390115(+)$1	268	110	133	14.9523
AAUAAUUguugccacuuuauuuc	chr14:50298512-50298878(-)$1	366	266	289	19.1872
acugaagauacaaaaauuagcca	chr1:215754225-215754485(+)$1	260	198	221	15.8404
CGGCGGAGAACUGAGGCCGGAGG	chr2:242591178-242591472(+)$1	294	189	212	15.4143
GCUGUGGCAAUGGAACAGGCUUG	chr3:119180592-119180915(-)$1	323	76	99	9.4481
AGAGUAAAAGCACAGAUAACUAU	chr9:102888684-102889017(+)$1	333	300	323	16.8818
GUUUUCUAACUAACUGAAGAUGU	chr4:187513768-187514021(-)$1	253	59	82	10.5137
CUAAACUUUUUUUGUUUCUUUUU	chr11:14535769-14536078(-)$1	309	15	38	15.3700
AUACUGACGAAUAUUUUAAGAGU	chr2:181851949-181852217(+)$1	268	228	251	13.3392
AUCUUUUUUAUUCCCUAAGGUAA	chr2:15747093-15747442(+)$1	349	186	209	19.1811
UCGGGAGCAAUGUAACUCGUCAA	chr6:139238598-139238846(-)$1	248	130	153	14.0124
UUUUCUGAGCAUGGAUGAAAAGU	chr6:91254237-91254529(-)$1	292	15	38	17.2537
UAAUGUAAUAUAUAUAUGCAAAG	chr14:58734041-58734338(-)$1	297	31	54	9.4919
GGACUUAUGUAUGAAUUAGGUUU	chr10:64952799-64953076(-)$1	277	52	75	10.3006
UGUAGUUAAGAAGGUUCUAAGCA	chr5:115238576-115238984(+)$1	408	130	153	19.0499
UUUGUGUAUUUUUCUUCAUAGGA	chr17:62510448-62510709(+)$1	261	95	118	12.9745
UUAAACUAUCAUGAUUGUUUACA	chr6:168313955-168314239(+)$1	284	54	77	12.6380
AAAGUACCCUGAAGCCGUGAGUU	chr20:44707946-44708202(-)$1	256	179	202	10.2863
UGAGGCUAAGAUGACUGCCUUUC	chr20:42087683-42087916(+)$1	233	137	160	15.5757
CCAGGAGAAUCAAGAGCUUGGAA	chr6:160174255-160174600(+)$1	345	278	301	18.0521
UGCACUGGGUAUGUGUGUGUGUA	chr12:112525214-112525613(-)$1	399	201	224	16.3413
CUAACUUUAUUUUCUUUGUUUUU	chr15:62160025-62160316(-)$1	291	135	158	16.7093
AGAAAUUCCACCCAGUAUUUCAA	chr21:40670111-40670449(-)$1	338	15	38	12.6380
CUCUUACAGAGUCUUGGUGUGAG	chr11:28143523-28143798(+)$1	275	156	179	11.0643
UAAAGCCAAUGUUCUAGUUUUCA	chr19:30461923-30462205(+)$1	282	83	106	15.4434
CUUAUGUCUCAAACCUAAAGUUU	chr2:109102760-109103006(+)$1	246	110	133	15.9829
UCAGGGAAGAAGUGGACAUGAGC	chr20:47589559-47589846(+)$1	287	219	242	18.7544
AUCACUGAAUGCCUAUGGAGUCA	chr3:123671298-123671654(-)$1	356	189	212	17.3828
CUGACUCUCAACUGUUGUCUUUU	chr5:130785620-130786023(-)$1	403	206	229	16.1054
UUUGUGUACUUGGUCUCAUCUCU	chr22:44340375-44340686(+)$1	311	168	191	15.7952
AUUUACUUUUACAGAUGUAAAUU	chr22:36334721-36335027(-)$1	306	262	285	15.5514
UUUUUUAAAUGUUUCUUAAAAAU	chr2:160619375-160619652(+)$1	277	238	261	19.0249
AUUCAUUUUGACAUGCAUGGGUU	chr1:201828017-201828298(+)$1	281	44	67	15.4644
GUUUGGGUUAAAGUUACAAACAG	chr3:179092840-179093117(+)$1	277	68	91	19.1872
AGUUAUUAAUAUCAAUGUAACUG	chr8:42914053-42914356(+)$1	303	74	97	13.6955
GUUGCAAAAUUACCAUGUGUUUA	chr12:100955406-100955774(+)$1	368	157	180	10.2440

#DB
..(((...........)))..))	chr12:107364958-107365210(+)$1	1	186	209	18.8476
((((((..........)))))).	chr12:11174412-11174679(-)$1	1	171	194	14.6103
((.((...........)))))))	chr12:108936504-108936798(-)$1	1	232	255	18.2568
(((((..............))))	chr4:95376455-95376733(+)$1	1	80	103	16.9846
(.(((.........))).)))).	chr3:169888898-169889231(-)$1	1	9	32	9.7533
((((..............)))))	chr4:68376610-68376964(-)$1	1	197	220	16.4782
................))))...	chr3:171851284-171851547(+)$1	1	116	139	14.4506
(((((...........)))))))	chr4:113189445-113189774(+)$1	1	118	141	16.8519
(((((.............)))))	chr7:11150829-11151078(+)$1	1	42	65	16.9060
((.(((..........)))))))	chr13:96251562-96251942(-)$1	1	243	266	16.0283
(((((..........)))))(((	chr17:65358885-65359192(-)$1	1	96	119	14.2892
...((............))....	chr2:160253480-160253821(-)$1	1	50	73	17.6305
.((((............)))).)	chr18:12986735-12986996(+)$1	1	105	128	17.9085
(((.((..........)).))).	chr14:75290772-75291076(+)$1	1	159	182	14.5004
((((((..........)))))))	chr1:150318507-150318813(+)$1	1	232	255	15.5514
(((((...........)))))))	chr17:25634665-25634888(+)$1	1	11	34	19.1872
(((((..........)))))(((	chr2:159389847-159390115(+)$1	1	110	133	14.9523
(((((...........)))))))	chr14:50298512-50298878(-)$1	1	266	289	19.1872
.((((...........)))).((	chr1:215754225-215754485(+)$1	1	198	221	15.8404
(..(((..........)))..))	chr2:242591178-242591472(+)$1	1	189	212	15.4143
.((((.........)))).))).	chr3:119180592-119180915(-)$1	1	76	99	9.4481
(.(((.............))).)	chr9:102888684-102889017(+)$1	1	300	323	16.8818
.(((((.........))))))))	chr4:187513768-187514021(-)$1	1	59	82	10.5137
(((((................))	chr11:14535769-14536078(-)$1	1	15	38	15.3700
(((((...............)))	chr2:181851949-181852217(+)$1	1	228	251	13.3392
(((((...........)))))..	chr2:15747093-15747442(+)$1	1	186	209	19.1811
.((((..........))))))..	chr6:139238598-139238846(-)$1	1	130	153	14.0124
(((((...........)))))).	chr6:91254237-91254529(-)$1	1	15	38	17.2537
(..((((.........))))..)	chr14:58734041-58734338(-)$1	1	31	54	9.4919
(((((((.........)))))))	chr10:64952799-64953076(-)$1	1	52	75	10.3006
(.(((...........)))))))	chr5:115238576-115238984(+)$1	1	130	153	19.0499
((((((..........)))))))	chr17:62510448-62510709(+)$1	1	95	118	12.9745
.(((((..........)))))..	chr6:168313955-168314239(+)$1	1	54	77	12.6380
((..(((.........)))..))	chr20:44707946-44708202(-)$1	1	179	202	10.2863
.(((((..........)))))..	chr20:42087683-42087916(+)$1	1	137	160	15.5757
(((((...........)))))))	chr6:160174255-160174600(+)$1	1	278	301	18.0521
(((((.............)))))	chr12:112525214-112525613(-)$1	1	201	224	16.3413
..(((............)))...	chr15:62160025-62160316(-)$1	1	135	158	16.7093
.(((((..........)))))..	chr21:40670111-40670449(-)$1	1	15	38	12.6380
(((.(((.........))).)))	chr11:28143523-28143798(+)$1	1	156	179	11.0643
.(((((..........)))))))	chr19:30461923-30462205(+)$1	1	83	106	15.4434
(..((..............))..	chr2:109102760-109103006(+)$1	1	110	133	15.9829
(((.(...........).)))))	chr20:47589559-47589846(+)$1	1	219	242	18.7544
((..(...........)..))))	chr3:123671298-123671654(-)$1	1	189	212	17.3828
..(((...........)))....	chr5:130785620-130786023(-)$1	1	206	229	16.1054
...(((..........)))...)	chr22:44340375-44340686(+)$1	1	168	191	15.7952
((((((..........)))))))	chr22:36334721-36335027(-)$1	1	262	285	15.5514
(((((............))))))	chr2:160619375-160619652(+)$1	1	238	261	19.0249
((((((..........))))).)	chr1:201828017-201828298(+)$1	1	44	67	15.4644
(((((...........)))))))	chr3:179092840-179093117(+)$1	1	68	91	19.1872
((((((..........)))))).	chr8:42914053-42914356(+)$1	1	74	97	13.6955
(.((((.........)))).)))	chr12:100955406-100955774(+)$1	1	157	180	10.2440

#PSSM
g : 0.17	f : 0.15	e : 0.15	[ : 0.07	" : 0.05	d : 0.05	h : 0.05	# : 0.05	: : 0.05	= : 0.05	i : 0.01	y : 0.01	c : 0.01	b : 0.01	& : 0.01	
e : 0.23	g : 0.17	f : 0.13	[ : 0.07	d : 0.07	h : 0.05	! : 0.05	" : 0.03	# : 0.03	= : 0.03	i : 0.01	y : 0.01	c : 0.01	& : 0.01	
e : 0.23	g : 0.15	c : 0.13	f : 0.11	d : 0.09	! : 0.09	[ : 0.03	h : 0.03	= : 0.03	y : 0.01	# : 0.01	" : 0.01	
e : 0.21	c : 0.17	g : 0.13	f : 0.11	d : 0.11	b : 0.05	[ : 0.05	h : 0.03	= : 0.03	! : 0.03	y : 0.01	
c : 0.21	e : 0.21	g : 0.13	d : 0.11	f : 0.09	b : 0.07	h : 0.03	= : 0.03	a : 0.03	w : 0.01	y : 0.01	
t : 0.26	e : 0.11	c : 0.09	u : 0.07	w : 0.05	v : 0.05	s : 0.05	g : 0.05	f : 0.03	r : 0.03	y : 0.03	d : 0.03	b : 0.01	x : 0.01	h : 0.01	
s : 0.32	t : 0.26	r : 0.07	u : 0.07	w : 0.05	v : 0.05	y : 0.03	c : 0.03	x : 0.01	d : 0.01	g : 0.01	
s : 0.32	t : 0.26	r : 0.15	u : 0.07	w : 0.05	v : 0.05	y : 0.03	x : 0.01	
s : 0.32	t : 0.26	r : 0.15	u : 0.07	w : 0.05	v : 0.05	y : 0.03	x : 0.01	
s : 0.32	t : 0.26	r : 0.15	u : 0.07	w : 0.05	v : 0.05	y : 0.03	x : 0.01	
s : 0.32	t : 0.26	r : 0.15	u : 0.07	w : 0.05	v : 0.05	y : 0.03	x : 0.01	
s : 0.32	t : 0.26	r : 0.15	u : 0.07	w : 0.05	v : 0.05	y : 0.03	x : 0.01	
s : 0.32	t : 0.26	r : 0.15	u : 0.07	w : 0.05	v : 0.05	y : 0.03	x : 0.01	
s : 0.32	t : 0.26	r : 0.15	u : 0.07	w : 0.05	v : 0.05	y : 0.03	x : 0.01	
s : 0.32	t : 0.26	r : 0.11	u : 0.07	w : 0.05	v : 0.05	y : 0.03	c : 0.01	d : 0.01	x : 0.01	
t : 0.26	s : 0.26	u : 0.07	r : 0.07	w : 0.05	v : 0.05	e : 0.05	d : 0.05	y : 0.03	c : 0.01	x : 0.01	
c : 0.17	e : 0.17	d : 0.11	g : 0.11	f : 0.07	u : 0.07	w : 0.05	v : 0.05	b : 0.03	h : 0.03	a : 0.03	y : 0.01	x : 0.01	
c : 0.17	e : 0.17	d : 0.13	g : 0.11	f : 0.07	b : 0.05	w : 0.05	v : 0.05	] : 0.03	h : 0.03	y : 0.01	x : 0.01	2 : 0.01	= : 0.01	
e : 0.21	c : 0.19	d : 0.13	f : 0.11	g : 0.11	w : 0.03	h : 0.03	] : 0.03	i : 0.01	b : 0.01	y : 0.01	x : 0.01	2 : 0.01	= : 0.01	
e : 0.24	g : 0.13	f : 0.11	d : 0.09	c : 0.07	2 : 0.05	h : 0.05	b : 0.03	] : 0.03	i : 0.01	4 : 0.01	y : 0.01	x : 0.01	6 : 0.01	3 : 0.01	= : 0.01	
e : 0.19	g : 0.17	f : 0.11	2 : 0.07	c : 0.07	d : 0.05	h : 0.05	i : 0.03	3 : 0.03	b : 0.03	= : 0.03	4 : 0.01	: : 0.01	y : 0.01	5 : 0.01	6 : 0.01	
g : 0.17	f : 0.15	e : 0.09	c : 0.07	3 : 0.07	h : 0.07	] : 0.05	= : 0.05	i : 0.03	d : 0.03	4 : 0.03	2 : 0.03	: : 0.03	5 : 0.01	6 : 0.01	
g : 0.17	e : 0.13	f : 0.07	3 : 0.07	h : 0.07	: : 0.07	4 : 0.05	d : 0.05	= : 0.05	c : 0.03	i : 0.03	] : 0.03	b : 0.03	5 : 0.01	2 : 0.01	6 : 0.01	

#score	797.3849437748809
#seq	52
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_CDS_m3_run2.txt

#BEAR
ggg!!ddddmmmmdddd22ggg	chr1:113460434-113460660(-)$1	226	137	159	10.9199
"""ccc[bbmmmmbb]ccc]bb	chr3:127872390-127872685(+)$1	295	149	171	8.2987
c[ccc[cccmmmmccc]ccccc	chr2:132249348-132249550(-)$1	202	44	66	10.0001
eeee[ddddllldddd]eeeee	chr9:19378759-19378973(-)$1	214	23	45	8.4039
"eeeee[bbmmmmbb]eeeee>	chr2:132241678-132241891(-)$1	213	43	65	7.8188
dd"""eeeeellleeeee333d	chr6:142740945-142741215(+)$1	270	181	203	7.0213
===::ddddmmmmddddccc[h	chr9:19379386-19379600(-)$1	214	116	138	9.0034
===::ddddmmmmddddccc[h	chr9:19379384-19379586(-)$1	202	102	124	9.0034
dddd[a[bbmmmmbb]a]dddd	chrX:153662604-153662837(+)$1	233	184	206	8.2320
eeee[ddddmmmmddddeeeee	chr12:56705047-56705257(-)$1	210	45	67	10.3977
ee!!ddddnnnnndddd4444e	chr6:43738624-43738851(+)$1	227	191	213	7.6379
cc[a"""bbmmmmbb4444a]c	chr2:130947941-130948155(+)$1	214	147	169	9.2860
cdddd[ddddllldddd]dddd	chr1:236157045-236157273(-)$1	228	198	220	7.9257
=========mmmm=========	chr21:38119979-38120206(+)$1	227	133	155	9.3193
c[ccc[cccmmmmccc]ccccc	chr2:132249350-132249616(-)$1	266	110	132	10.0001
gg"""ddddmmmmdddd333gg	chr7:103151313-103151526(-)$1	213	18	40	11.6080
fffff[cccmmmmcccffffff	chr6:74227976-74228179(-)$1	203	13	35	8.0017
ggg!!ddddmmmmdddd22ggg	chr1:113460460-113460704(-)$1	244	181	203	10.9199
[a[a[ddddmmmmddddaa]dd	chr19:13054536-13054787(+)$1	251	187	209	10.9338
eeee[ddddmmmmddddeeeee	chr12:56705018-56705243(-)$1	225	31	53	10.3977
d[ccc[ccclllcccccc]ddd	chr1:236175118-236175352(-)$1	234	186	208	7.8216
c[ccc[cccmmmmccc]ccccc	chr2:130940203-130940441(+)$1	238	87	109	10.0001

#otherMatches

#Seq PSSM
UUCGGUAUCUUUGGAUGGAGAG	chr1:113460434-113460660(-)$1	226	137	159	10.9199
CUGCGGUCGUCUUUGCCCGAGU	chr3:127872390-127872685(+)$1	295	149	171	8.2987
GAGCCCCAGGACCCUGCGGCCG	chr2:132249348-132249550(-)$1	202	44	66	10.0001
UAGUAAAUGUGUCAUUCAUUGU	chr9:19378759-19378973(-)$1	214	23	45	8.4039
GGUGCUGCAUUUAUGGGGCGCG	chr2:132241678-132241891(-)$1	213	43	65	7.8188
AGUGUGGUUAGCUUGACCUUUC	chr6:142740945-142741215(+)$1	270	181	203	7.0213
GUAAAAGUUGACAAAUUGUUGC	chr9:19379386-19379600(-)$1	214	116	138	9.0034
GUAAAAGUUGACAAAUUGUUGC	chr9:19379384-19379586(-)$1	202	102	124	9.0034
CCAGGCAAGGGCACUAGGCUGG	chrX:153662604-153662837(+)$1	233	184	206	8.2320
GAGGACAUUUCUAGGUGCCUUA	chr12:56705047-56705257(-)$1	210	45	67	10.3977
GUGUGCGCAGACAGUGCUCCAG	chr6:43738624-43738851(+)$1	227	191	213	7.6379
GAACGCAGCAGCCGCGAAGGAU	chr2:130947941-130948155(+)$1	214	147	169	9.2860
UCCUGAGUGCGAUGCGCACGGG	chr1:236157045-236157273(-)$1	228	198	220	7.9257
gcgcggcacccgagugcugcgc	chr21:38119979-38120206(+)$1	227	133	155	9.3193
GAGCCCCAGGACCCUGCGGCCG	chr2:132249350-132249616(-)$1	266	110	132	10.0001
UGCUUCAAGUAUUUUUGUCACA	chr7:103151313-103151526(-)$1	213	18	40	11.6080
AAUGUGUCUGUCAAGGAUGUUC	chr6:74227976-74228179(-)$1	203	13	35	8.0017
UUCGGUAUCUUUGGAUGGAGAG	chr1:113460460-113460704(-)$1	244	181	203	10.9199
GUAGAGAGGCCUGCCUCCAGGG	chr19:13054536-13054787(+)$1	251	187	209	10.9338
GAGGACAUUUCUAGGUGCCUUA	chr12:56705018-56705243(-)$1	225	31	53	10.3977
GAGCACAUGGCCCAUUGCCCUG	chr1:236175118-236175352(-)$1	234	186	208	7.8216
GAGCCCCAGGACCCUGCGGCCG	chr2:130940203-130940441(+)$1	238	87	109	10.0001

#DB
(((..((((....))))..)))	chr1:113460434-113460660(-)$1	1	137	159	10.9199
...(((.((....)).))).))	chr3:127872390-127872685(+)$1	1	149	171	8.2987
(.(((.(((....))).)))))	chr2:132249348-132249550(-)$1	1	44	66	10.0001
((((.((((...)))).)))))	chr9:19378759-19378973(-)$1	1	23	45	8.4039
.(((((.((....)).))))).	chr2:132241678-132241891(-)$1	1	43	65	7.8188
((...(((((...)))))...)	chr6:142740945-142741215(+)$1	1	181	203	7.0213
)))..((((....))))(((.(	chr9:19379386-19379600(-)$1	1	116	138	9.0034
)))..((((....))))(((.(	chr9:19379384-19379586(-)$1	1	102	124	9.0034
((((.(.((....)).).))))	chrX:153662604-153662837(+)$1	1	184	206	8.2320
((((.((((....)))))))))	chr12:56705047-56705257(-)$1	1	45	67	10.3977
((..((((.....))))....)	chr6:43738624-43738851(+)$1	1	191	213	7.6379
((.(...((....))....).)	chr2:130947941-130948155(+)$1	1	147	169	9.2860
)((((.((((...)))).))))	chr1:236157045-236157273(-)$1	1	198	220	7.9257
(((((((((....)))))))))	chr21:38119979-38120206(+)$1	1	133	155	9.3193
(.(((.(((....))).)))))	chr2:132249350-132249616(-)$1	1	110	132	10.0001
((...((((....))))...))	chr7:103151313-103151526(-)$1	1	18	40	11.6080
(((((.(((....)))))))))	chr6:74227976-74228179(-)$1	1	13	35	8.0017
(((..((((....))))..)))	chr1:113460460-113460704(-)$1	1	181	203	10.9199
.(.(.((((....)))))).))	chr19:13054536-13054787(+)$1	1	187	209	10.9338
((((.((((....)))))))))	chr12:56705018-56705243(-)$1	1	31	53	10.3977
(.(((.(((...)))))).)))	chr1:236175118-236175352(-)$1	1	186	208	7.8216
(.(((.(((....))).)))))	chr2:130940203-130940441(+)$1	1	87	109	10.0001

#PSSM
c : 0.22	e : 0.18	g : 0.13	d : 0.13	= : 0.13	" : 0.09	f : 0.04	[ : 0.04	
e : 0.22	[ : 0.18	g : 0.13	d : 0.13	= : 0.13	" : 0.04	c : 0.04	f : 0.04	a : 0.04	
c : 0.18	e : 0.18	" : 0.13	= : 0.13	g : 0.09	d : 0.09	[ : 0.09	! : 0.04	f : 0.04	
c : 0.22	e : 0.18	! : 0.13	" : 0.09	: : 0.09	d : 0.09	a : 0.09	= : 0.04	f : 0.04	
c : 0.22	[ : 0.22	" : 0.13	! : 0.09	: : 0.09	d : 0.09	e : 0.04	= : 0.04	f : 0.04	
d : 0.45	[ : 0.27	e : 0.09	c : 0.04	a : 0.04	" : 0.04	= : 0.04	
d : 0.50	c : 0.22	[ : 0.13	e : 0.04	" : 0.04	= : 0.04	
d : 0.50	c : 0.22	b : 0.18	e : 0.04	= : 0.04	
d : 0.45	c : 0.22	b : 0.18	e : 0.04	n : 0.04	= : 0.04	
m : 0.77	l : 0.09	e : 0.04	n : 0.04	d : 0.04	
m : 0.77	l : 0.18	n : 0.04	
m : 0.77	l : 0.18	n : 0.04	
m : 0.77	l : 0.09	d : 0.04	n : 0.04	c : 0.04	
d : 0.50	c : 0.22	b : 0.18	e : 0.04	= : 0.04	
d : 0.50	c : 0.22	b : 0.18	e : 0.04	= : 0.04	
d : 0.50	c : 0.22	] : 0.13	e : 0.04	4 : 0.04	= : 0.04	
d : 0.45	] : 0.18	c : 0.09	e : 0.09	a : 0.04	4 : 0.04	= : 0.04	f : 0.04	
c : 0.31	e : 0.22	2 : 0.09	] : 0.09	4 : 0.09	= : 0.04	3 : 0.04	f : 0.04	a : 0.04	
c : 0.27	e : 0.18	2 : 0.09	3 : 0.09	d : 0.09	4 : 0.09	= : 0.04	f : 0.04	a : 0.04	] : 0.04	
c : 0.22	e : 0.18	d : 0.13	g : 0.09	] : 0.09	3 : 0.09	4 : 0.04	a : 0.04	= : 0.04	f : 0.04	
e : 0.18	d : 0.18	g : 0.13	c : 0.13	[ : 0.09	b : 0.04	3 : 0.04	4 : 0.04	] : 0.04	= : 0.04	f : 0.04	
d : 0.22	c : 0.18	e : 0.18	g : 0.13	h : 0.09	b : 0.04	> : 0.04	= : 0.04	f : 0.04	

#score	202.95214771486368
#seq	22
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_transcript_m3_run1.txt

#BEAR
d[==========mmmm==========	chr6:43014746-43014963(-)$1	217	40	66	11.5720
f==========nnnnn==========	chr6:111732605-111732869(-)$1	264	112	138	12.3872
==========oooooo==========	chr14:32627143-32627396(+)$1	253	219	245	16.7458
"""cccddddoooooodddd]ccc]e	chr2:187370059-187370349(+)$1	290	60	86	13.0008
ciiiiiiiiiooooooiiiiiiiii2	chr14:58832119-58832372(+)$1	253	219	245	15.3959
eeee[eeeeeooooooeeeeeeeeee	chr12:57557455-57557707(+)$1	252	163	189	12.3854
ccc"""ddddoooooodddd22cccB	chr13:51238719-51238967(+)$1	248	175	201	11.8704
eee"""ddddoooooodddd333eee	chr5:52930317-52930595(+)$1	278	186	212	13.1230
ggggg####aooooooa333gggggg	chr16:89354733-89354988(-)$1	255	33	59	14.3246
hhh####cccooooooccc333hhhh	chr13:113913847-113914100(+)$1	253	223	249	13.3412
iiiiiiiii[annnnna]iiiiiiii	chr9:80916983-80917240(+)$1	257	184	210	11.5506
:ccc[eeeeeooooooeeeee333cc	chr3:49052874-49053125(+)$1	251	203	229	12.4983
d####eeeeeooooooeeeee333dd	chrX:73442280-73442529(-)$1	249	189	215	13.0476
ddd!!bbcccooooooccc]bb]ddd	chr12:108938093-108938418(-)$1	325	291	317	12.1780
==========oooooo==========	chr15:93536273-93536520(+)$1	247	166	192	16.7458
dddd!!ddddoooooodddd]dddd]	chr15:72858958-72859240(+)$1	282	190	216	11.8208
iiiiii[cccooooooccciiiiiii	chr17:35547445-35547697(-)$1	252	103	129	15.8552
"eeeee[cccooooooccc]eeeee4	chr13:20593857-20594160(+)$1	303	270	296	13.7128
$$$gggggggooooooggggggg22e	chr14:31177062-31177360(+)$1	298	201	227	13.1404
ffff"""cccooooooccc]ffffff	chr13:98018437-98018719(+)$1	282	154	180	13.6583
'ffffffcccooooooccc]ffffff	chr20:62890000-62890274(+)$1	274	111	137	12.5623
c!!gggggggoooooogggggggccc	chr11:62371541-62371802(-)$1	261	47	73	14.2394
"ffffffcccooooooccc333ffff	chr10:24880438-24880716(-)$1	278	30	56	13.7631
gggg[eeeeeooooooeeeee]gggg	chr16:28890303-28890548(+)$1	245	106	132	14.0317
ggggbb[cccooooooccc]bb]ggg	chr20:17599161-17599441(-)$1	280	200	226	13.7996
==========oooooo==========	chr18:32914976-32915260(-)$1	284	71	97	16.7458
ggggg!!cccooooooccc333gggg	chr20:13753394-13753681(-)$1	287	31	57	15.4332
$$$ccc[cccooooooccc]ccc333	chrY:2721363-2721647(+)$1	284	246	272	13.8630
iiiiiii[bboooooobb]iiiiiii	chr17:26948041-26948302(-)$1	261	31	57	14.6213
==========oooooo==========	chr12:76443178-76443422(-)$1	244	97	123	16.7458
fffffeeeeeooooooeeeee]ffff	chrX:147006323-147006587(+)$1	264	39	65	12.4393
===========nnnnn==========	chr13:25879835-25880087(+)$1	252	224	250	12.6561
==========mmmm==========dd	chr1:244613336-244613592(-)$1	256	160	186	11.2134
##eeeee[bboooooobb22eeeeec	chr2:98166077-98166345(-)$1	268	110	136	11.8699
[eeeee[cccooooooccc]eeeee]	chr17:61877294-61877565(+)$1	271	53	79	13.7805
bb[cccddddoooooodddd4444cc	chr5:74807194-74807530(-)$1	336	110	136	12.4788
diiiiiiiiiooooooiiiiiiiii:	chr5:151167187-151167450(+)$1	263	211	237	14.3854
$ggggggg[aooooooa]ggggggg7	chr13:97995152-97995416(+)$1	264	123	149	13.6943
ffffff[cccooooooccc22fffff	chr1:171560615-171560880(+)$1	265	42	68	13.0753
============lll===========	chr6:42641750-42641994(+)$1	244	66	92	12.7772
[eeeee[cccooooooccceeeee]c	chr15:75132485-75132746(-)$1	261	227	253	13.5871
==========rrrrrrrrr=======	chr9:131035006-131035278(-)$1	272	176	202	11.7042
e"""ffffffooooooffffff4444	chrY:22741556-22741869(+)$1	313	270	296	12.1046
"a[dddd[bboooooobbdddda333	chr7:141449717-141449982(+)$1	265	56	82	11.8992
gggg[eeeeeooooooeeeee]gggg	chr3:15299940-15300200(+)$1	260	143	169	14.0317
ggggggg[bboooooobbggggggg2	chr2:230695390-230695650(-)$1	260	93	119	13.6121
ffff[eeeeeooooooeeeeefffff	chr15:52319726-52319982(+)$1	256	184	210	12.5474
iiii[a[cccooooooccc]a]iiii	chr12:122238761-122239022(-)$1	261	131	157	15.6770
==========rrrrrrrrr=======	chr20:40127856-40128114(-)$1	258	50	76	11.7042
========[aooooooa=========	chr20:33057733-33057983(+)$1	250	180	206	16.4314
ggggg[ddddoooooodddd]ggggg	chr17:55423116-55423385(+)$1	269	209	235	13.9160
[ccc!!ddddoooooodddd333ccc	chr14:36094638-36094885(-)$1	247	112	138	13.7266

#otherMatches

#Seq PSSM
guggguacCUGCUACUGCAGGUGCCC	chr6:43014746-43014963(-)$1	217	40	66	11.5720
GCCUUUUUAUGGUUAUCAUGAGAAGG	chr6:111732605-111732869(-)$1	264	112	138	12.3872
AUUUUUACCAUUUCAUUGGUAAAAAU	chr14:32627143-32627396(+)$1	253	219	245	16.7458
ACUAAGCACUAUUUGAGGUGACUUCU	chr2:187370059-187370349(+)$1	290	60	86	13.0008
AGGUUGGUGUCUUUCAAUGCUAGCUU	chr14:58832119-58832372(+)$1	253	219	245	15.3959
gccuuguuuuuuauUCAAAAUGGGUU	chr12:57557455-57557707(+)$1	252	163	189	12.3854
CAGGACUUGUCACCUUACAAUACUGG	chr13:51238719-51238967(+)$1	248	175	201	11.8704
gauuuccugugcucaaacaguucauu	chr5:52930317-52930595(+)$1	278	186	212	13.1230
CCAACAACGGGCACUACAAGGUUGGC	chr16:89354733-89354988(-)$1	255	33	59	14.3246
guugcagcuuucuuauaaggaaaauA	chr13:113913847-113914100(+)$1	253	223	249	13.3412
GAAAUCAUUGUAUCUAGGAAUGAUUU	chr9:80916983-80917240(+)$1	257	184	210	11.5506
ACGCACAGCUCUCAGAAGCUGCAGGC	chr3:49052874-49053125(+)$1	251	203	229	12.4983
aagccuccuaaaguccugggauugua	chrX:73442280-73442529(-)$1	249	189	215	13.0476
ccuuucccaccauccugugaggcagg	chr12:108938093-108938418(-)$1	325	291	317	12.1780
AGAAAAAGAUGAAAUGGUUUUUUUUU	chr15:93536273-93536520(+)$1	247	166	192	16.7458
GGCUAAGGCACCUCUUUGUCAGGCUU	chr15:72858958-72859240(+)$1	282	190	216	11.8208
cucuuuaguguuuuuccacagggaga	chr17:35547445-35547697(-)$1	252	103	129	15.8552
AGUCUGUGUUCCUGUUAAUCCAGAUA	chr13:20593857-20594160(+)$1	303	270	296	13.7128
AACAGCAAGUAAGUACACUUGUUAGA	chr14:31177062-31177360(+)$1	298	201	227	13.1404
CAUCUGCUGGUUUAACCCAUGAUGGC	chr13:98018437-98018719(+)$1	282	154	180	13.6583
CAUUUCAGAAAAUGUCUUCAUGAGGU	chr20:62890000-62890274(+)$1	274	111	137	12.5623
CUACCCAGGGUGGCCUCCCUGGGGGU	chr11:62371541-62371802(-)$1	261	47	73	14.2394
CUAUACUAUCCUCCAAGAUCUCAGUA	chr10:24880438-24880716(-)$1	278	30	56	13.7631
UCCUGGGUAGAGCUCCCUGCUGAGGA	chr16:28890303-28890548(+)$1	245	106	132	14.0317
GGUAGGUGGCCUCCAUGUCCCCAUGC	chr20:17599161-17599441(-)$1	280	200	226	13.7996
AGAUAAAUGAUGUGAUUUAUUUAUUU	chr18:32914976-32915260(-)$1	284	71	97	16.7458
AUAUGUUUAUUUUUCUGUAUUUCAUG	chr20:13753394-13753681(-)$1	287	31	57	15.4332
AUCUCCUGAAAAUUGCUUCUGGAACA	chrY:2721363-2721647(+)$1	284	246	272	13.8630
AGUUUCUGAGACAUAGCUGGGAGGCU	chr17:26948041-26948302(-)$1	261	31	57	14.6213
AUAAUUUUGUUCUGCUGCAGGGUUAU	chr12:76443178-76443422(-)$1	244	97	123	16.7458
aauaauuuGGUAUCUUUCAGAGUUGU	chrX:147006323-147006587(+)$1	264	39	65	12.4393
UGUUGUUUAUCCCCCUGGUAAACGGC	chr13:25879835-25880087(+)$1	252	224	250	12.6561
UUUCUUGCUGUCGACAGCGGGAGAGA	chr1:244613336-244613592(-)$1	256	160	186	11.2134
UUUCUGUCACGUUCUAGUCCGCAGAC	chr2:98166077-98166345(-)$1	268	110	136	11.8699
UGUUUGUGGUUCUUGUAUUUCAAGCU	chr17:61877294-61877565(+)$1	271	53	79	13.7805
GCGGAGGUGUGAGUGGACGCGGGACU	chr5:74807194-74807530(-)$1	336	110	136	12.4788
aauucauaaaauaaaauuuauGAAUG	chr5:151167187-151167450(+)$1	263	211	237	14.3854
UUCCCUGUAGGUCCCGCGAUAGGGAC	chr13:97995152-97995416(+)$1	264	123	149	13.6943
ACCAAGAUUGAUUUGACAGGCUUUGG	chr1:171560615-171560880(+)$1	265	42	68	13.0753
AUGUUGGCAUAUGAAAUAUGCUAAUG	chr6:42641750-42641994(+)$1	244	66	92	12.7772
AGGGUUUAGACCUCGUUCUGACCUGC	chr15:75132485-75132746(-)$1	261	227	253	13.5871
UCCAAUGGGGUAGCGCUCCCCCCAUU	chr9:131035006-131035278(-)$1	272	176	202	11.7042
UAUUUUGUGUGGAAGAACACAAUCua	chrY:22741556-22741869(+)$1	313	270	296	12.1046
AGUGUCGUGGAAUCUGCCUGACCAUU	chr7:141449717-141449982(+)$1	265	56	82	11.8992
cuuugacucucaaagaggagugaagg	chr3:15299940-15300200(+)$1	260	143	169	14.0317
AGCCUCUAGUUCUGUUGCAGGGGCUG	chr2:230695390-230695650(-)$1	260	93	119	13.6121
aggcaugagccacucugcucagccUG	chr15:52319726-52319982(+)$1	256	184	210	12.5474
GGCCGGGCUGGUCUGGCAGGCGGGCC	chr12:122238761-122239022(-)$1	261	131	157	15.6770
UUACAGAAUUGUUUUCUUGGAUUCUG	chr20:40127856-40128114(-)$1	258	50	76	11.7042
UUCUGGUGUCAGGUUAGUAUUGGAAC	chr20:33057733-33057983(+)$1	250	180	206	16.4314
UAUUUUUUGAAAUGUAUCAAUAGGUA	chr17:55423116-55423385(+)$1	269	209	235	13.9160
GUUCUCCUUUGUGUUAGAAGUAUGAA	chr14:36094638-36094885(-)$1	247	112	138	13.7266

#DB
(.((((((((((....))))))))))	chr6:43014746-43014963(-)$1	1	40	66	11.5720
)((((((((((.....))))))))))	chr6:111732605-111732869(-)$1	1	112	138	12.3872
((((((((((......))))))))))	chr14:32627143-32627396(+)$1	1	219	245	16.7458
...(((((((......)))).))).)	chr2:187370059-187370349(+)$1	1	60	86	13.0008
((((((((((......))))))))).	chr14:58832119-58832372(+)$1	1	219	245	15.3959
((((.(((((......))))))))))	chr12:57557455-57557707(+)$1	1	163	189	12.3854
(((...((((......))))..))))	chr13:51238719-51238967(+)$1	1	175	201	11.8704
(((...((((......))))...)))	chr5:52930317-52930595(+)$1	1	186	212	13.1230
(((((....(......)...))))))	chr16:89354733-89354988(-)$1	1	33	59	14.3246
(((....(((......)))...))))	chr13:113913847-113914100(+)$1	1	223	249	13.3412
(((((((((.(.....).))))))))	chr9:80916983-80917240(+)$1	1	184	210	11.5506
.(((.(((((......)))))...))	chr3:49052874-49053125(+)$1	1	203	229	12.4983
(....(((((......)))))...))	chrX:73442280-73442529(-)$1	1	189	215	13.0476
(((..(((((......))).)).)))	chr12:108938093-108938418(-)$1	1	291	317	12.1780
((((((((((......))))))))))	chr15:93536273-93536520(+)$1	1	166	192	16.7458
((((..((((......)))).)))).	chr15:72858958-72859240(+)$1	1	190	216	11.8208
((((((.(((......))))))))))	chr17:35547445-35547697(-)$1	1	103	129	15.8552
.(((((.(((......))).))))).	chr13:20593857-20594160(+)$1	1	270	296	13.7128
...(((((((......)))))))..)	chr14:31177062-31177360(+)$1	1	201	227	13.1404
((((...(((......))).))))))	chr13:98018437-98018719(+)$1	1	154	180	13.6583
.(((((((((......))).))))))	chr20:62890000-62890274(+)$1	1	111	137	12.5623
(..(((((((......))))))))))	chr11:62371541-62371802(-)$1	1	47	73	14.2394
.(((((((((......)))...))))	chr10:24880438-24880716(-)$1	1	30	56	13.7631
((((.(((((......))))).))))	chr16:28890303-28890548(+)$1	1	106	132	14.0317
((((((.(((......))).)).)))	chr20:17599161-17599441(-)$1	1	200	226	13.7996
((((((((((......))))))))))	chr18:32914976-32915260(-)$1	1	71	97	16.7458
(((((..(((......)))...))))	chr20:13753394-13753681(-)$1	1	31	57	15.4332
...(((.(((......))).)))...	chrY:2721363-2721647(+)$1	1	246	272	13.8630
(((((((.((......)).)))))))	chr17:26948041-26948302(-)$1	1	31	57	14.6213
((((((((((......))))))))))	chr12:76443178-76443422(-)$1	1	97	123	16.7458
((((((((((......))))).))))	chrX:147006323-147006587(+)$1	1	39	65	12.4393
(((((((((((.....))))))))))	chr13:25879835-25880087(+)$1	1	224	250	12.6561
((((((((((....))))))))))((	chr1:244613336-244613592(-)$1	1	160	186	11.2134
..(((((.((......))..))))))	chr2:98166077-98166345(-)$1	1	110	136	11.8699
.(((((.(((......))).))))).	chr17:61877294-61877565(+)$1	1	53	79	13.7805
((.(((((((......))))....))	chr5:74807194-74807530(-)$1	1	110	136	12.4788
)(((((((((......))))))))).	chr5:151167187-151167450(+)$1	1	211	237	14.3854
.(((((((.(......).))))))).	chr13:97995152-97995416(+)$1	1	123	149	13.6943
((((((.(((......)))..)))))	chr1:171560615-171560880(+)$1	1	42	68	13.0753
((((((((((((...)))))))))))	chr6:42641750-42641994(+)$1	1	66	92	12.7772
.(((((.(((......)))))))).)	chr15:75132485-75132746(-)$1	1	227	253	13.5871
((((((((((.........)))))))	chr9:131035006-131035278(-)$1	1	176	202	11.7042
(...((((((......))))))....	chrY:22741556-22741869(+)$1	1	270	296	12.1046
.(.((((.((......)))))))...	chr7:141449717-141449982(+)$1	1	56	82	11.8992
((((.(((((......))))).))))	chr3:15299940-15300200(+)$1	1	143	169	14.0317
(((((((.((......))))))))).	chr2:230695390-230695650(-)$1	1	93	119	13.6121
((((.(((((......))))))))))	chr15:52319726-52319982(+)$1	1	184	210	12.5474
((((.(.(((......))).).))))	chr12:122238761-122239022(-)$1	1	131	157	15.6770
((((((((((.........)))))))	chr20:40127856-40128114(-)$1	1	50	76	11.7042
((((((((.(......))))))))))	chr20:33057733-33057983(+)$1	1	180	206	16.4314
(((((.((((......)))).)))))	chr17:55423116-55423385(+)$1	1	209	235	13.9160
.(((..((((......))))...)))	chr14:36094638-36094885(-)$1	1	112	138	13.7266

#PSSM
= : 0.19	g : 0.13	d : 0.09	f : 0.09	" : 0.07	i : 0.07	c : 0.05	e : 0.05	$ : 0.05	[ : 0.05	h : 0.01	: : 0.01	' : 0.01	# : 0.01	b : 0.01	
= : 0.21	g : 0.15	i : 0.11	f : 0.11	e : 0.09	c : 0.05	" : 0.03	# : 0.03	d : 0.03	$ : 0.03	[ : 0.01	h : 0.01	! : 0.01	b : 0.01	a : 0.01	
= : 0.23	g : 0.15	i : 0.11	e : 0.11	f : 0.11	c : 0.05	" : 0.03	d : 0.03	$ : 0.03	[ : 0.03	h : 0.01	# : 0.01	! : 0.01	
= : 0.23	g : 0.19	i : 0.11	f : 0.11	c : 0.09	e : 0.09	" : 0.05	# : 0.03	d : 0.03	! : 0.01	
= : 0.23	g : 0.13	[ : 0.11	i : 0.09	f : 0.09	e : 0.07	c : 0.05	" : 0.05	! : 0.05	# : 0.03	b : 0.01	d : 0.01	
= : 0.23	e : 0.21	i : 0.09	g : 0.07	f : 0.07	c : 0.05	" : 0.05	! : 0.05	# : 0.03	b : 0.03	d : 0.01	a : 0.01	[ : 0.01	
= : 0.23	d : 0.15	e : 0.15	[ : 0.15	i : 0.07	g : 0.07	f : 0.05	# : 0.03	b : 0.01	" : 0.01	! : 0.01	
c : 0.26	= : 0.23	d : 0.13	e : 0.13	[ : 0.07	i : 0.05	g : 0.05	# : 0.01	f : 0.01	
c : 0.26	= : 0.21	d : 0.13	e : 0.13	b : 0.07	i : 0.05	g : 0.03	[ : 0.03	# : 0.01	f : 0.01	
c : 0.26	= : 0.21	d : 0.13	e : 0.13	b : 0.07	a : 0.05	i : 0.03	g : 0.03	[ : 0.01	f : 0.01	
o : 0.84	= : 0.07	r : 0.03	a : 0.01	m : 0.01	
o : 0.84	n : 0.05	= : 0.03	r : 0.03	m : 0.01	
o : 0.84	n : 0.05	m : 0.03	r : 0.03	l : 0.01	
o : 0.84	n : 0.05	m : 0.03	r : 0.03	l : 0.01	
o : 0.84	n : 0.05	r : 0.03	m : 0.01	= : 0.01	l : 0.01	
o : 0.84	n : 0.05	= : 0.03	r : 0.03	m : 0.01	
c : 0.26	= : 0.17	d : 0.13	e : 0.13	a : 0.07	b : 0.07	i : 0.03	g : 0.03	r : 0.03	f : 0.01	
c : 0.26	= : 0.19	d : 0.13	e : 0.13	b : 0.07	i : 0.03	] : 0.03	g : 0.03	r : 0.03	3 : 0.01	f : 0.01	
c : 0.26	= : 0.19	d : 0.15	e : 0.13	g : 0.07	i : 0.05	r : 0.03	3 : 0.01	] : 0.01	2 : 0.01	f : 0.01	
= : 0.23	d : 0.15	e : 0.15	] : 0.15	i : 0.09	3 : 0.07	g : 0.07	2 : 0.03	f : 0.01	
= : 0.23	e : 0.21	i : 0.09	3 : 0.09	g : 0.09	] : 0.05	f : 0.05	2 : 0.03	b : 0.03	c : 0.01	4 : 0.01	d : 0.01	a : 0.01	
= : 0.23	3 : 0.13	g : 0.11	i : 0.09	e : 0.09	f : 0.09	] : 0.07	c : 0.03	b : 0.03	d : 0.03	2 : 0.01	4 : 0.01	
= : 0.23	g : 0.17	i : 0.11	f : 0.11	e : 0.09	3 : 0.07	c : 0.05	] : 0.03	4 : 0.03	h : 0.01	d : 0.01	a : 0.01	
= : 0.23	g : 0.15	i : 0.11	e : 0.11	f : 0.11	c : 0.07	3 : 0.07	d : 0.03	4 : 0.03	h : 0.01	2 : 0.01	
= : 0.21	g : 0.15	i : 0.11	f : 0.11	e : 0.09	c : 0.09	d : 0.07	] : 0.03	3 : 0.03	h : 0.01	2 : 0.01	4 : 0.01	
= : 0.21	g : 0.11	c : 0.11	f : 0.11	e : 0.07	i : 0.07	d : 0.05	2 : 0.03	] : 0.03	4 : 0.03	3 : 0.03	B : 0.01	h : 0.01	: : 0.01	7 : 0.01	

#score	703.473664717272
#seq	52
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_CDS_m2_run1.txt

#BEAR
:ddddoooooodddd	chr9:19378781-19378998(-)$1	217	137	152	11.3022
:ddddoooooodddd	chr9:19378759-19378973(-)$1	214	112	127	11.3022
eeeeeooooooeeee	chr1:113460434-113460660(-)$1	226	67	82	11.5341
:ddddoooooodddd	chr9:19378708-19378945(-)$1	237	84	99	11.3022
:ddddoooooodddd	chr2:132249350-132249616(-)$1	266	251	266	11.3022
eddddoooooodddd	chr21:38119979-38120206(+)$1	227	45	60	11.6903
gggggoooooogggg	chr6:74227868-74228084(-)$1	216	47	62	9.9179
eeeeeooooooeeee	chr2:130940241-130940449(+)$1	208	187	202	11.5341
eeeeeooooooeeee	chr2:132249348-132249550(-)$1	202	182	197	11.5341
bbcccooooooccc]	chr9:19379386-19379600(-)$1	214	76	91	9.8445
ddcccooooooccc:	chr6:142740945-142741215(+)$1	270	114	129	9.2625
eeeeeooooooeeee	chr12:56705047-56705257(-)$1	210	165	180	11.5341
gggggoooooogggg	chr6:74227985-74228200(-)$1	215	163	178	9.9179
eeeeeooooooeeee	chr6:43738624-43738851(+)$1	227	169	184	11.5341
:ddddoooooodddd	chr9:19378798-19379017(-)$1	219	156	171	11.3022
:ddddoooooodddd	chr9:19378745-19378959(-)$1	214	98	113	11.3022
bbcccooooooccc]	chr9:19379384-19379586(-)$1	202	62	77	9.8445
eeeeeooooooeeee	chr11:65402421-65402639(+)$1	218	24	39	11.5341
eeeeeooooooeeee	chr1:113460460-113460704(-)$1	244	111	126	11.5341
gggggoooooogggg	chr6:74227857-74228068(-)$1	211	31	46	9.9179
:ddddoooooodddd	chr7:103151313-103151526(-)$1	213	71	86	11.3022
eeeeeooooooeeee	chr12:56705018-56705243(-)$1	225	151	166	11.5341
:ddddoooooodddd	chr9:19378773-19378978(-)$1	205	117	132	11.3022

#otherMatches

#Seq PSSM
AGGGUGUCUUGACCC	chr9:19378781-19378998(-)$1	217	137	152	11.3022
AGGGUGUCUUGACCC	chr9:19378759-19378973(-)$1	214	112	127	11.3022
GGCCAACGGACUGGC	chr1:113460434-113460660(-)$1	226	67	82	11.5341
AGGGUGUCUUGACCC	chr9:19378708-19378945(-)$1	237	84	99	11.3022
CCCUGAGUGGCCAGG	chr2:132249350-132249616(-)$1	266	251	266	11.3022
UGCGGCCACUACCGC	chr21:38119979-38120206(+)$1	227	45	60	11.6903
AAGUCAUUUGAGACU	chr6:74227868-74228084(-)$1	216	47	62	9.9179
UGGCCCUGAGUGGCC	chr2:130940241-130940449(+)$1	208	187	202	11.5341
UGGCCCUGAGUGGCC	chr2:132249348-132249550(-)$1	202	182	197	11.5341
CACAGAAGUUGCUGC	chr9:19379386-19379600(-)$1	214	76	91	9.8445
GAUCUGUGGGAGGAA	chr6:142740945-142741215(+)$1	270	114	129	9.2625
ACUACGUACGUGUAG	chr12:56705047-56705257(-)$1	210	165	180	11.5341
AAGUCAUUUGAGACU	chr6:74227985-74228200(-)$1	215	163	178	9.9179
CUCAUGGACGGGUGA	chr6:43738624-43738851(+)$1	227	169	184	11.5341
AGGGUGUCUUGACCC	chr9:19378798-19379017(-)$1	219	156	171	11.3022
AGGGUGUCUUGACCC	chr9:19378745-19378959(-)$1	214	98	113	11.3022
CACAGAAGUUGCUGC	chr9:19379384-19379586(-)$1	202	62	77	9.8445
UGGAGCCCUUCCUCU	chr11:65402421-65402639(+)$1	218	24	39	11.5341
GGCCAACGGACUGGC	chr1:113460460-113460704(-)$1	244	111	126	11.5341
AAGUCAUUUGAGACU	chr6:74227857-74228068(-)$1	211	31	46	9.9179
AAGUGAAUGAGCACU	chr7:103151313-103151526(-)$1	213	71	86	11.3022
ACUACGUACGUGUAG	chr12:56705018-56705243(-)$1	225	151	166	11.5341
AGGGUGUCUUGACCC	chr9:19378773-19378978(-)$1	205	117	132	11.3022

#DB
.((((......))))	chr9:19378781-19378998(-)$1	1	137	152	11.3022
.((((......))))	chr9:19378759-19378973(-)$1	1	112	127	11.3022
(((((......))))	chr1:113460434-113460660(-)$1	1	67	82	11.5341
.((((......))))	chr9:19378708-19378945(-)$1	1	84	99	11.3022
.((((......))))	chr2:132249350-132249616(-)$1	1	251	266	11.3022
)((((......))))	chr21:38119979-38120206(+)$1	1	45	60	11.6903
(((((......))))	chr6:74227868-74228084(-)$1	1	47	62	9.9179
(((((......))))	chr2:130940241-130940449(+)$1	1	187	202	11.5341
(((((......))))	chr2:132249348-132249550(-)$1	1	182	197	11.5341
(((((......))).	chr9:19379386-19379600(-)$1	1	76	91	9.8445
))(((......))).	chr6:142740945-142741215(+)$1	1	114	129	9.2625
(((((......))))	chr12:56705047-56705257(-)$1	1	165	180	11.5341
(((((......))))	chr6:74227985-74228200(-)$1	1	163	178	9.9179
(((((......))))	chr6:43738624-43738851(+)$1	1	169	184	11.5341
.((((......))))	chr9:19378798-19379017(-)$1	1	156	171	11.3022
.((((......))))	chr9:19378745-19378959(-)$1	1	98	113	11.3022
(((((......))).	chr9:19379384-19379586(-)$1	1	62	77	9.8445
(((((......))))	chr11:65402421-65402639(+)$1	1	24	39	11.5341
(((((......))))	chr1:113460460-113460704(-)$1	1	111	126	11.5341
(((((......))))	chr6:74227857-74228068(-)$1	1	31	46	9.9179
.((((......))))	chr7:103151313-103151526(-)$1	1	71	86	11.3022
(((((......))))	chr12:56705018-56705243(-)$1	1	151	166	11.5341
.((((......))))	chr9:19378773-19378978(-)$1	1	117	132	11.3022

#PSSM
e : 0.39	: : 0.34	g : 0.13	b : 0.08	d : 0.04	
d : 0.43	e : 0.34	g : 0.13	b : 0.08	
d : 0.39	e : 0.34	g : 0.13	c : 0.13	
d : 0.39	e : 0.34	g : 0.13	c : 0.13	
d : 0.39	e : 0.34	g : 0.13	c : 0.13	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
d : 0.39	e : 0.34	g : 0.13	c : 0.13	
d : 0.39	e : 0.34	g : 0.13	c : 0.13	
d : 0.39	e : 0.34	g : 0.13	c : 0.13	
d : 0.39	e : 0.34	g : 0.13	] : 0.08	: : 0.04	

#score	253.08743323748243
#seq	23
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF821EXR_HNRNPUL1_UTR_m2_run2.txt

#BEAR
!ggggggg[eeeeennnnneeeeeggggggg	chr22:50013893-50014165(-)$1	272	197	228	16.9260
dddd####ffffffnnnnnffffff22dddd	chr17:56082321-56082591(-)$1	270	61	92	13.7411
$$hhhhhhhh[cccnnnnnccc]hhhhhhhh	chr18:47017932-47018136(-)$1	204	117	148	15.1630
gggggdddd!!cccnnnnnccc22dddd]gg	chr22:50013563-50013832(-)$1	269	7	38	14.5552
leeeee:gggggggnnnnnggggggg::hhh	chr11:93463935-93464181(-)$1	246	77	108	15.5273
!ccc"""gggggggnnnnngggggggccc22	chr11:93463748-93463980(-)$1	232	62	93	17.2505
leeeee:gggggggnnnnnggggggg::hhh	chr11:93463981-93464236(-)$1	255	132	163	15.5273
!ggggggg[eeeeennnnneeeeeggggggg	chr22:50013828-50014093(-)$1	265	125	156	16.9260

#otherMatches

#Seq PSSM
uguuggguacauggauuugcuGUGACCUGAC	chr22:50013893-50014165(-)$1	272	197	228	16.9260
CAGACUGUGAUAUUGUGUAAAUGUCUAUCUG	chr17:56082321-56082591(-)$1	270	61	92	13.7411
GAUAUUUAUACUGAAUGAGUUACUGUAAGUA	chr18:47017932-47018136(-)$1	204	117	148	15.1630
agacugagagugucacagagaccaucucaag	chr22:50013563-50013832(-)$1	269	7	38	14.5552
CCACAUGUGAUUUUUCUUUAAAAUCAGUGAG	chr11:93463935-93464181(-)$1	246	77	108	15.5273
CUGGAAAUGUAAAAUUUACUUUUAUACUAUU	chr11:93463748-93463980(-)$1	232	62	93	17.2505
CCACAUGUGAUUUUUCUUUAAAAUCAGUGAG	chr11:93463981-93464236(-)$1	255	132	163	15.5273
uguuggguacauggauuugcuGUGACCUGAC	chr22:50013828-50014093(-)$1	265	125	156	16.9260

#DB
.(((((((.(((((.....))))))))))))	chr22:50013893-50014165(-)$1	1	197	228	16.9260
((((....((((((.....))))))..))))	chr17:56082321-56082591(-)$1	1	61	92	13.7411
..((((((((.(((.....))).))))))))	chr18:47017932-47018136(-)$1	1	117	148	15.1630
(((((((((..(((.....)))..)))).))	chr22:50013563-50013832(-)$1	1	7	38	14.5552
.))))).(((((((.....)))))))..(((	chr11:93463935-93464181(-)$1	1	77	108	15.5273
.(((...(((((((.....))))))))))..	chr11:93463748-93463980(-)$1	1	62	93	17.2505
.))))).(((((((.....)))))))..(((	chr11:93463981-93464236(-)$1	1	132	163	15.5273
.(((((((.(((((.....))))))))))))	chr22:50013828-50014093(-)$1	1	125	156	16.9260

#PSSM
! : 0.37	l : 0.25	d : 0.12	$ : 0.12	g : 0.12	
g : 0.37	e : 0.25	d : 0.12	$ : 0.12	c : 0.12	
g : 0.37	e : 0.25	d : 0.12	h : 0.12	c : 0.12	
g : 0.37	e : 0.25	d : 0.12	h : 0.12	c : 0.12	
g : 0.37	e : 0.25	# : 0.12	h : 0.12	" : 0.12	
g : 0.25	e : 0.25	# : 0.12	h : 0.12	d : 0.12	" : 0.12	
g : 0.25	: : 0.25	# : 0.12	h : 0.12	d : 0.12	" : 0.12	
g : 0.62	# : 0.12	h : 0.12	d : 0.12	
g : 0.37	[ : 0.25	f : 0.12	h : 0.12	d : 0.12	
g : 0.37	e : 0.25	f : 0.12	h : 0.12	! : 0.12	
g : 0.37	e : 0.25	f : 0.12	[ : 0.12	! : 0.12	
g : 0.37	e : 0.25	c : 0.25	f : 0.12	
g : 0.37	e : 0.25	c : 0.25	f : 0.12	
g : 0.37	e : 0.25	c : 0.25	f : 0.12	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
g : 0.37	e : 0.25	c : 0.25	f : 0.12	
g : 0.37	e : 0.25	c : 0.25	f : 0.12	
g : 0.37	e : 0.25	c : 0.25	f : 0.12	
g : 0.37	e : 0.25	f : 0.12	] : 0.12	2 : 0.12	
g : 0.37	e : 0.25	f : 0.12	h : 0.12	2 : 0.12	
g : 0.62	f : 0.12	h : 0.12	d : 0.12	
g : 0.62	2 : 0.12	h : 0.12	d : 0.12	
g : 0.25	: : 0.25	2 : 0.12	h : 0.12	d : 0.12	c : 0.12	
g : 0.25	d : 0.25	: : 0.25	h : 0.12	c : 0.12	
h : 0.37	g : 0.25	d : 0.12	] : 0.12	c : 0.12	
g : 0.37	h : 0.37	d : 0.12	2 : 0.12	
g : 0.37	h : 0.37	d : 0.12	2 : 0.12	

#score	125.61675534866251
#seq	8
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_UTR_m3_run2.txt

#BEAR
gggg!!ddddqqqqqqqqdddd333ggg	chr6:30711248-30711472(-)$1	224	43	71	17.1824
ffff"""cccqqqqqqqqccc]ffffff	chr4:24585886-24586151(-)$1	265	100	128	16.3717
dd[gggggggqqqqqqqqgggggggddd	chr12:108962907-108963161(+)$1	254	6	34	15.4702
eeee"""cccqqqqqqqqccc]eeeee]	chr14:69847080-69847336(-)$1	256	133	161	16.6096
hhhhhhhcccqqqqqqqqcccddddrrr	chr1:43392208-43392450(-)$1	242	63	91	13.6024
gggggggbbrrrrrrrrrbb]ggggggg	chr7:127231551-127231826(+)$1	275	216	244	10.1183
[cccffffffqqqqqqqqffffff>>>>	chr2:97525796-97526027(-)$1	231	127	155	15.0595
iiiiiiiiirrrrrrrrriiiiiiiii]	chr17:38078101-38078316(-)$1	215	142	170	11.1093
===========qqqqqqqq=========	chr20:30193925-30194175(+)$1	250	220	248	14.9043
ggggffffffqqqqqqqqffffffeeee	chr17:38544972-38545217(-)$1	245	38	66	15.3283
eee"""ddddqqqqqqqqdddd333eee	chr2:220047755-220047974(+)$1	219	3	31	16.7335
eee[ccc[bbqqqqqqqqbb]ccc333e	chr1:116947119-116947375(+)$1	256	211	239	15.8442
ddd[a!!cccqqqqqqqqccc22a]ddd	chr6:30711105-30711361(-)$1	256	99	127	16.3476
a[ffffff[aqqqqqqqqa]ffffff]a	chr2:135206772-135207065(+)$1	293	155	183	15.3550
!ffffff[bbqqqqqqqqbb]ffffff]	chr17:63525588-63525826(-)$1	238	132	160	14.9889
[a!!ffffffqqqqqqqqffffff]a]d	chr6:33172038-33172294(+)$1	256	51	79	16.0241
"eeeee!!bbqqqqqqqqbb333eeeee	chr1:31404286-31404548(-)$1	262	153	181	15.4537
!iiiiiiiiiqqqqqqqqiiiiiiiii3	chrX:108886037-108886284(-)$1	247	31	59	16.8105
fff[ffffffqqqqqqqqffffff333f	chr6:37142682-37142930(+)$1	248	205	233	15.9085
[iiiiiiiiiqqqqqqqqiiiiiiiii3	chr7:45933054-45933283(+)$1	229	141	169	16.8128
:::cccddddqqqqqqqqdddd333ccc	chr19:18499791-18500045(+)$1	254	4	32	13.5429
eeee"""cccqqqqqqqqccc22eeeee	chr4:74286766-74287005(+)$1	239	7	35	16.4924
ggg[ffffffqqqqqqqqffffff]ggg	chr7:94298453-94298766(+)$1	313	280	308	15.9769
::ccceeeeeqqqqqqqqeeeee22ccc	chr21:27253073-27253345(-)$1	272	34	62	13.9252
!!a####cccqqqqqqqqccc333a22c	chr17:70117191-70117462(+)$1	271	156	184	17.9668
cc$$$$$cccrrrrrrrrrccc333ccc	chr19:18704013-18704269(-)$1	256	202	230	11.2495
!bb!!eeeeeqqqqqqqqeeeee22bb2	chr7:103112166-103112450(-)$1	284	61	89	15.3925
ee"""eeeeeqqqqqqqqeeeee>>>>>	chr20:48808770-48809032(+)$1	262	72	100	15.1607
[aeeeee!!aqqqqqqqqa22eeeee]a	chr12:66357128-66357423(+)$1	295	161	189	14.9700
fff!!eeeeeqqqqqqqqeeeeefffff	chr6:32948860-32949114(+)$1	254	201	229	15.4647
cc!!ffffffqqqqqqqqffffff22cc	chr12:115121456-115121695(-)$1	239	19	47	15.9010
gggg"""cccqqqqqqqqccc333gggg	chr19:12907725-12907996(-)$1	271	214	242	18.0868
dddbb!!cccqqqqqqqqccc22bb333	chr6:7586604-7586866(+)$1	262	29	57	15.7543
==========qqqqqqqq==========	chr3:51426498-51426786(+)$1	288	240	268	17.1580
:ccc[eeeeeqqqqqqqqeeeee]ccc:	chr4:166419235-166419535(+)$1	300	133	161	14.1621
hhhhhhhcccqqqqqqqqccc333hhhh	chr12:8071859-8072110(-)$1	251	203	231	15.5160
[ccc!!ddddqqqqqqqqdddd333ccc	chr2:43451277-43451515(-)$1	238	38	66	17.2086
ffffff!!bbqqqqqqqqbb22ffffff	chr7:103112445-103112647(-)$1	202	72	100	14.5280
b!!gggggggqqqqqqqqgggggggbb]	chr19:13054890-13055138(+)$1	248	131	159	15.8426
bccc!!bb[aqqqqqqqqabb22ccc]b	chr2:61765045-61765305(-)$1	260	135	163	15.1285
b!!dddd[bbqqqqqqqqbbdddd22bb	chr2:43453579-43453839(-)$1	260	70	98	13.8327
!!a####cccqqqqqqqqccc333a22c	chr17:70117292-70117544(+)$1	252	55	83	17.9668
hhh[ccccccqqqqqqqqccc333ccc]	chr13:113977557-113977809(+)$1	252	202	230	17.1928
a[ccc[ddddqqqqqqqqddddccc]a]	chr21:27253443-27253705(-)$1	262	129	157	15.8146
""bb!!ddddqqqqqqqqdddd333bb4	chr5:133291223-133291537(-)$1	314	55	83	16.1571
eeeee[cccrrrrrrrrrccceeeeecc	chr8:128748386-128748666(+)$1	280	49	77	10.3659
c[ccceeeeeqqqqqqqqeeeee]cccc	chr17:66526556-66526803(+)$1	247	3	31	15.8115
eeee[eeeeeqqqqqqqqeeeeeeeeee	chr5:52781897-52782150(+)$1	253	175	203	15.1670
e[a"""ddddqqqqqqqqdddd333a]e	chr6:7586189-7586437(+)$1	248	210	238	17.1600
[a!!bb[cccrrrrrrrrrcccbb22a]	chr19:18704233-18704490(-)$1	257	20	48	10.4371

#otherMatches

#Seq PSSM
UACGUCCUCCUAGGUGAUGGAGAUGUGU	chr6:30711248-30711472(-)$1	224	43	71	17.1824
CUUCCUUAAUAACUGCCCGUUCGAAGAG	chr4:24585886-24586151(-)$1	265	100	128	16.3717
UAAUGUAUAUUUUGAAUUGUGUGUAUGA	chr12:108962907-108963161(+)$1	254	6	34	15.4702
ACAGCGUGCUGUAGUGGAAGUUUUGUAU	chr14:69847080-69847336(-)$1	256	133	161	16.6096
GGGUGGAGACUAAGCCCUGUCGAGACAC	chr1:43392208-43392450(-)$1	242	63	91	13.6024
GUAGCCUGCAAAGGAGAGGCUAGGUUAC	chr7:127231551-127231826(+)$1	275	216	244	10.1183
CCCACUGCCCCGAGUGUCGGGCAGCGAU	chr2:97525796-97526027(-)$1	231	127	155	15.0595
CUUGGUUCCAGAGGUGAGGGGGCCAGGG	chr17:38078101-38078316(-)$1	215	142	170	11.1093
AUUUUUUGAAAAGCAGACAUUUUAAAAA	chr20:30193925-30194175(+)$1	250	220	248	14.9043
UGGCUGUGUCUAUAACUUGACACAGUCA	chr17:38544972-38545217(-)$1	245	38	66	15.3283
CACUUUAUAAUUUUUCUCUUGUCUUGUG	chr2:220047755-220047974(+)$1	219	3	31	16.7335
GGAAAGACUGAAAGAAUACAUUUUAUAU	chr1:116947119-116947375(+)$1	256	211	239	15.8442
GGGAGGACUCGGGUGGGGGAGGACGUCC	chr6:30711105-30711361(-)$1	256	99	127	16.3476
AGGGUGCAGGAGAGAGACCGUGUGCCGU	chr2:135206772-135207065(+)$1	293	155	183	15.3550
CAGUUUAUGGAUAUGCUGCUUUAAACUU	chr17:63525588-63525826(-)$1	238	132	160	14.9889
GGGAGAGGGUUAGUUGGUAUUCUCAUGG	chr6:33172038-33172294(+)$1	256	51	79	16.0241
AUGUGUGAUCUUUAUUUUGAAAAAUACA	chr1:31404286-31404548(-)$1	262	153	181	15.4537
GUUGCUGAUUUUAUUCUUGAUCAGUAGU	chrX:108886037-108886284(-)$1	247	31	59	16.8105
UUGCUCUGUUUGUGGGGUGACGGGACUC	chr6:37142682-37142930(+)$1	248	205	233	15.9085
CUGGAUAUGUUGUUAAACACGUGUCUAU	chr7:45933054-45933283(+)$1	229	141	169	16.8128
UGUCCUGCCCUGUGGAAUGGGCUCAAGG	chr19:18499791-18500045(+)$1	254	4	32	13.5429
CAAAUAAGACUUAUAUUUGUCCUUUUGU	chr4:74286766-74287005(+)$1	239	7	35	16.4924
UUAAUAGAGGAUGAGUGACCUCUGAUAA	chr7:94298453-94298766(+)$1	313	280	308	15.9769
UUGGGUCUUUGAUAAAGAAAAGAAUCCC	chr21:27253073-27253345(-)$1	272	34	62	13.9252
GUGAACUGGCCACCCCGCGCCUUCCUAA	chr17:70117191-70117462(+)$1	271	156	184	17.9668
AUAAAUGAGCUAUUUAGGUGCUGUGAUU	chr19:18704013-18704269(-)$1	256	202	230	11.2495
UCAUAUUCAUACCUUCUGAUGAAGUUGU	chr7:103112166-103112450(-)$1	284	61	89	15.3925
AGAAACGUCUAUGUGUACAGAUGAAUGA	chr20:48808770-48809032(+)$1	262	72	100	15.1607
AGGUUUAGUGAAAAACUGCUGUAAACAC	chr12:66357128-66357423(+)$1	295	161	189	14.9700
UUGUAAAUAAAGAAAAUAUUAUUCAAGU	chr6:32948860-32949114(+)$1	254	201	229	15.4647
GGCGGCGAACGGAAGCCAGUUUGCAAUU	chr12:115121456-115121695(-)$1	239	19	47	15.9010
UCCAAACUCCACAGUAUGGGACCCUGGA	chr19:12907725-12907996(-)$1	271	214	242	18.0868
ACCCAUAUACUCUUCGAUGUACUUGUUU	chr6:7586604-7586866(+)$1	262	29	57	15.7543
GGAUUUUUUUAUUAAAGAAAAAAAAUUU	chr3:51426498-51426786(+)$1	288	240	268	17.1580
AUUAUGUAGUCCGUUAACACUACUUAAA	chr4:166419235-166419535(+)$1	300	133	161	14.1621
GAAGAUUGUGAAUAUUUCCAUAUGGAUU	chr12:8071859-8072110(-)$1	251	203	231	15.5160
UCUCCAUCUCCGACGACUGAGGCAAGAG	chr2:43451277-43451515(-)$1	238	38	66	17.2086
UUGUGGAUGAAGACCCUAUCUCCCACAA	chr7:103112445-103112647(-)$1	202	72	100	14.5280
UUAGCUCCCCUCCAACCUGGGGGGCAGU	chr19:13054890-13055138(+)$1	248	131	159	15.8426
CCGGAGCCGCGUGAGAGAGGGAGCCGUG	chr2:61765045-61765305(-)$1	260	135	163	15.1285
UAGGGCGCGCGCUCGGAGGCCGCCGAGU	chr2:43453579-43453839(-)$1	260	70	98	13.8327
GUGAACUGGCCACCCCGCGCCUUCCUAA	chr17:70117292-70117544(+)$1	252	55	83	17.9668
UCUGUCAGCUAAAAUGGGAGCUCAUGAG	chr13:113977557-113977809(+)$1	252	202	230	17.1928
GUGAACGUGGGAGUUCAGCUGCUUCUCU	chr21:27253443-27253705(-)$1	262	129	157	15.8146
CAUGGUUGACUUACAAGUGUCACUACAG	chr5:133291223-133291537(-)$1	314	55	83	16.1571
GAUCGCGCUGAGUAUAAAAGCCGGUUUU	chr8:128748386-128748666(+)$1	280	49	77	10.3659
GUACAACAGUUUUGUGUCACUGUCUGUC	chr17:66526556-66526803(+)$1	247	3	31	15.8115
UGUGAGGUCUACUGGAUGAGGCCCAUAG	chr5:52781897-52782150(+)$1	253	175	203	15.1670
CGAUUUUUGAUCAAUUCUUUAAUUUUGG	chr6:7586189-7586437(+)$1	248	210	238	17.1600
gaaugaagccuccuUCAGUGGCUCUGUG	chr19:18704233-18704490(-)$1	257	20	48	10.4371

#DB
((((..((((........))))...)))	chr6:30711248-30711472(-)$1	1	43	71	17.1824
((((...(((........))).))))))	chr4:24585886-24586151(-)$1	1	100	128	16.3717
((.(((((((........))))))))))	chr12:108962907-108963161(+)$1	1	6	34	15.4702
((((...(((........))).))))).	chr14:69847080-69847336(-)$1	1	133	161	16.6096
)))))))(((........)))((((...	chr1:43392208-43392450(-)$1	1	63	91	13.6024
(((((((((.........)).)))))))	chr7:127231551-127231826(+)$1	1	216	244	10.1183
.(((((((((........))))))....	chr2:97525796-97526027(-)$1	1	127	155	15.0595
(((((((((.........))))))))).	chr17:38078101-38078316(-)$1	1	142	170	11.1093
(((((((((((........)))))))))	chr20:30193925-30194175(+)$1	1	220	248	14.9043
))))((((((........))))))((((	chr17:38544972-38545217(-)$1	1	38	66	15.3283
(((...((((........))))...)))	chr2:220047755-220047974(+)$1	1	3	31	16.7335
(((.(((.((........)).)))...)	chr1:116947119-116947375(+)$1	1	211	239	15.8442
(((.(..(((........)))..).)))	chr6:30711105-30711361(-)$1	1	99	127	16.3476
(.((((((.(........).)))))).)	chr2:135206772-135207065(+)$1	1	155	183	15.3550
.((((((.((........)).)))))).	chr17:63525588-63525826(-)$1	1	132	160	14.9889
.(..((((((........)))))).).)	chr6:33172038-33172294(+)$1	1	51	79	16.0241
.(((((..((........))...)))))	chr1:31404286-31404548(-)$1	1	153	181	15.4537
.(((((((((........))))))))).	chrX:108886037-108886284(-)$1	1	31	59	16.8105
(((.((((((........))))))...)	chr6:37142682-37142930(+)$1	1	205	233	15.9085
.(((((((((........))))))))).	chr7:45933054-45933283(+)$1	1	141	169	16.8128
...(((((((........))))...)))	chr19:18499791-18500045(+)$1	1	4	32	13.5429
((((...(((........)))..)))))	chr4:74286766-74287005(+)$1	1	7	35	16.4924
(((.((((((........)))))).)))	chr7:94298453-94298766(+)$1	1	280	308	15.9769
..((((((((........)))))..)))	chr21:27253073-27253345(-)$1	1	34	62	13.9252
..(....(((........)))...)..)	chr17:70117191-70117462(+)$1	1	156	184	17.9668
((.....(((.........)))...)))	chr19:18704013-18704269(-)$1	1	202	230	11.2495
.((..(((((........)))))..)).	chr7:103112166-103112450(-)$1	1	61	89	15.3925
((...(((((........))))).....	chr20:48808770-48809032(+)$1	1	72	100	15.1607
.((((((..(........)..))))).)	chr12:66357128-66357423(+)$1	1	161	189	14.9700
(((..(((((........))))))))))	chr6:32948860-32949114(+)$1	1	201	229	15.4647
((..((((((........))))))..))	chr12:115121456-115121695(-)$1	1	19	47	15.9010
((((...(((........)))...))))	chr19:12907725-12907996(-)$1	1	214	242	18.0868
(((((..(((........)))..))...	chr6:7586604-7586866(+)$1	1	29	57	15.7543
((((((((((........))))))))))	chr3:51426498-51426786(+)$1	1	240	268	17.1580
.(((.(((((........))))).))).	chr4:166419235-166419535(+)$1	1	133	161	14.1621
((((((((((........)))...))))	chr12:8071859-8072110(-)$1	1	203	231	15.5160
.(((..((((........))))...)))	chr2:43451277-43451515(-)$1	1	38	66	17.2086
((((((..((........))..))))))	chr7:103112445-103112647(-)$1	1	72	100	14.5280
(..(((((((........))))))))).	chr19:13054890-13055138(+)$1	1	131	159	15.8426
((((..((.(........)))..))).)	chr2:61765045-61765305(-)$1	1	135	163	15.1285
(..((((.((........))))))..))	chr2:43453579-43453839(-)$1	1	70	98	13.8327
..(....(((........)))...)..)	chr17:70117292-70117544(+)$1	1	55	83	17.9668
(((.((((((........)))...))).	chr13:113977557-113977809(+)$1	1	202	230	17.1928
(.(((.((((........))))))).).	chr21:27253443-27253705(-)$1	1	129	157	15.8146
..((..((((........))))...)).	chr5:133291223-133291537(-)$1	1	55	83	16.1571
(((((.(((.........))))))))))	chr8:128748386-128748666(+)$1	1	49	77	10.3659
(.((((((((........))))).))))	chr17:66526556-66526803(+)$1	1	3	31	15.8115
((((.(((((........))))))))))	chr5:52781897-52782150(+)$1	1	175	203	15.1670
(.(...((((........))))...).)	chr6:7586189-7586437(+)$1	1	210	238	17.1600
.(..((.(((.........)))))..).	chr19:18704233-18704490(-)$1	1	20	48	10.4371

#PSSM
e : 0.16	[ : 0.12	g : 0.10	! : 0.10	f : 0.08	d : 0.06	h : 0.06	: : 0.06	c : 0.06	b : 0.06	= : 0.04	a : 0.04	" : 0.04	i : 0.02	
e : 0.16	c : 0.12	g : 0.10	f : 0.10	[ : 0.08	! : 0.08	d : 0.06	h : 0.06	i : 0.06	a : 0.06	= : 0.04	: : 0.04	b : 0.02	" : 0.02	
e : 0.16	c : 0.14	f : 0.12	g : 0.10	! : 0.10	h : 0.06	i : 0.06	a : 0.06	= : 0.04	d : 0.04	b : 0.04	[ : 0.02	: : 0.02	$ : 0.02	" : 0.02	
c : 0.16	g : 0.12	e : 0.12	[ : 0.10	! : 0.10	f : 0.08	i : 0.06	" : 0.06	h : 0.04	= : 0.04	# : 0.04	b : 0.04	$ : 0.02	d : 0.02	
f : 0.18	" : 0.14	! : 0.12	c : 0.12	g : 0.06	i : 0.06	e : 0.06	h : 0.04	= : 0.04	# : 0.04	b : 0.04	[ : 0.04	a : 0.02	$ : 0.02	d : 0.02	
f : 0.18	e : 0.18	! : 0.12	" : 0.12	g : 0.06	i : 0.06	c : 0.06	h : 0.04	= : 0.04	# : 0.04	[ : 0.04	$ : 0.02	d : 0.02	b : 0.02	
d : 0.16	f : 0.16	e : 0.16	" : 0.08	! : 0.08	g : 0.06	i : 0.06	c : 0.06	h : 0.04	= : 0.04	# : 0.04	$ : 0.02	b : 0.02	[ : 0.02	
c : 0.27	d : 0.14	f : 0.14	e : 0.14	i : 0.06	[ : 0.06	! : 0.06	g : 0.04	b : 0.04	= : 0.04	
c : 0.27	d : 0.14	e : 0.14	b : 0.12	f : 0.12	i : 0.06	g : 0.04	= : 0.04	[ : 0.04	! : 0.02	
c : 0.25	d : 0.14	e : 0.14	f : 0.12	b : 0.10	r : 0.06	a : 0.06	g : 0.04	= : 0.04	i : 0.04	
q : 0.88	r : 0.10	= : 0.02	
q : 0.90	r : 0.10	
q : 0.90	r : 0.10	
q : 0.90	r : 0.10	
q : 0.90	r : 0.10	
q : 0.90	r : 0.10	
q : 0.90	r : 0.10	
q : 0.90	r : 0.10	
c : 0.23	d : 0.14	e : 0.14	b : 0.12	f : 0.12	i : 0.06	a : 0.06	g : 0.04	r : 0.04	q : 0.02	= : 0.02	
c : 0.27	d : 0.14	b : 0.14	e : 0.14	f : 0.12	i : 0.06	g : 0.04	= : 0.04	] : 0.02	2 : 0.02	
c : 0.27	d : 0.16	f : 0.14	e : 0.14	] : 0.06	i : 0.06	g : 0.04	= : 0.04	2 : 0.04	3 : 0.02	b : 0.02	
d : 0.18	e : 0.18	f : 0.16	3 : 0.12	2 : 0.10	g : 0.06	i : 0.06	c : 0.06	] : 0.04	= : 0.04	
3 : 0.25	f : 0.19	e : 0.19	2 : 0.08	g : 0.06	i : 0.06	d : 0.04	= : 0.04	c : 0.04	b : 0.02	
3 : 0.23	f : 0.21	e : 0.12	g : 0.06	i : 0.06	c : 0.06	d : 0.04	= : 0.04	2 : 0.04	b : 0.04	] : 0.04	a : 0.02	> : 0.02	
3 : 0.18	e : 0.14	f : 0.10	2 : 0.10	c : 0.10	g : 0.08	i : 0.06	] : 0.06	> : 0.04	= : 0.04	a : 0.04	d : 0.02	b : 0.02	h : 0.02	
e : 0.16	c : 0.16	f : 0.10	2 : 0.10	g : 0.08	i : 0.06	3 : 0.06	b : 0.06	d : 0.04	> : 0.04	= : 0.04	a : 0.04	r : 0.02	h : 0.02	] : 0.02	
c : 0.18	e : 0.12	] : 0.10	g : 0.08	f : 0.08	b : 0.08	i : 0.06	3 : 0.06	d : 0.04	> : 0.04	= : 0.04	2 : 0.04	a : 0.04	r : 0.02	h : 0.02	
c : 0.18	] : 0.14	e : 0.14	g : 0.08	f : 0.08	d : 0.06	3 : 0.06	> : 0.04	= : 0.04	a : 0.04	b : 0.04	r : 0.02	2 : 0.02	: : 0.02	h : 0.02	4 : 0.02	

#score	765.3701681765319
#seq	50
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_CDS_m1_run2.txt

#BEAR
gggggggvvvvvvvvvvvvvgggggg	chr12:98941438-98941699(+)$1	261	163	189	24.1272
eee[cccxxxxxxxxxxxxxxxccc]	chr12:123463444-123463698(+)$1	254	16	42	18.6449
b"""cccvvvvvvvvvvvvvccc333	chr10:121336429-121336705(-)$1	276	23	49	23.5572
!!eeeeeuuuuuuuuuuuueeeee22	chr20:32251389-32251631(-)$1	242	81	107	24.1585
iiiiiiiuuuuuuuuuuuuiiiiiii	chr1:12379584-12379865(+)$1	281	171	197	24.4843
h!!ddddyyyyyyyyyyyyyyyyddd	chr10:116623294-116623620(+)$1	326	231	257	21.0636
ccbb[bbvvvvvvvvvvvvvbb]bb]	chr13:25028991-25029267(-)$1	276	221	247	21.6622
ccbb[bbyyyyyyyyyyyyyyyybb]	chr2:70129371-70129699(+)$1	328	231	257	20.7723
[bb[cccwwwwwwwwwwwwwwccc]b	chr17:80708301-80708541(+)$1	240	80	106	22.3246
&&eeeeeuuuuuuuuuuuueeeee77	chr1:47758928-47759257(-)$1	329	204	230	22.0273
!!eeeeettttttttttteeeee333	chr6:99852270-99852563(-)$1	293	236	262	22.9412
!ffffffwwwwwwwwwwwwwwfffff	chr19:3976113-3976331(-)$1	218	93	119	22.6738
eee[cccuuuuuuuuuuuuccc]eee	chr5:179044531-179044742(-)$1	211	22	48	24.0967
ggggggguuuuuuuuuuuuggggggg	chr2:181927424-181927646(+)$1	222	191	217	24.7558
iiiiiiiuuuuuuuuuuuuiiiiiii	chr2:131904236-131904487(+)$1	251	88	114	24.4843
d"""cccwwwwwwwwwwwwwwccc44	chr5:38945626-38945883(-)$1	257	123	149	22.7609
========ttttttttttt=======	chr1:53333195-53333443(+)$1	248	192	218	23.3469
::cccwwwwwwwwwwwwwwcccgggg	chr17:8370441-8370690(+)$1	249	88	114	20.2612
ddeeeeettttttttttteeeee333	chr2:242276824-242277096(+)$1	272	143	169	22.3691
ffffffwwwwwwwwwwwwwwffffff	chr17:46972960-46973227(+)$1	267	234	260	22.1828
dd"""ccctttttttttttccc]ddd	chr20:33645222-33645464(-)$1	242	151	177	22.1186
gggeeeeettttttttttteeeee:g	chr13:33109795-33110042(-)$1	247	113	139	22.1978
!gggggggtttttttttttggggggg	chr8:126033915-126034176(+)$1	261	22	48	23.2736
eeeeeyyyyyyyyyyyyyyyyeeeee	chr3:141622386-141622659(+)$1	273	20	46	21.7666
gggggggxxxxxxxxxxxxxxxgggg	chr6:109689939-109690170(-)$1	231	67	93	19.3090
ggggggguuuuuuuuuuuuggggggg	chr5:118469063-118469336(+)$1	273	103	129	24.7558
:gggggggtttttttttttggggggg	chr1:25687048-25687322(+)$1	274	113	139	22.3375
e[eeeeeuuuuuuuuuuuueeeee]e	chr17:62496606-62496864(-)$1	258	86	112	24.2504
dbb[cccuuuuuuuuuuuuccc]bb]	chr11:637277-637559(+)$1	282	24	50	23.3747
::eeeeevvvvvvvvvvvvveeeee:	chr6:4056556-4056784(+)$1	228	61	87	20.7609
c!!eeeeettttttttttteeeeecc	chr15:85259154-85259361(-)$1	207	56	82	23.0247
gffffffuuuuuuuuuuuuffffff]	chr6:136596699-136597004(-)$1	305	38	64	23.8902
cc!!cccuuuuuuuuuuuuccc22cc	chr7:105738075-105738329(-)$1	254	119	145	23.8834
gggggggvvvvvvvvvvvvvgggggg	chr7:135612229-135612482(-)$1	253	159	185	24.1272
gggggggwwwwwwwwwwwwwwggggg	chr18:209922-210169(+)$1	247	194	220	23.5110
bfffffftttttttttttffffff:F	chr11:47189517-47189792(-)$1	275	43	69	20.5395
ffffffwwwwwwwwwwwwwwffffff	chr2:70131409-70131668(+)$1	259	119	145	22.1828
%%eeeeettttttttttteeeeeccc	chr19:2425965-2426259(-)$1	294	30	56	21.3195
iiiiiiiitttttttttttiiiiiii	chr6:42646278-42646507(+)$1	229	78	104	22.7865
iiiiiccctttttttttttcccccc!	chr6:131931004-131931333(-)$1	329	90	116	22.9571
d"""cccuuuuuuuuuuuuccc]ddd	chr2:181927415-181927624(+)$1	209	48	74	23.7750
ii!!cccyyyyyyyyyyyyyyyyccc	chr1:224377710-224377988(+)$1	278	220	246	22.3906
dgggggggtttttttttttggggggg	chr5:37327600-37327843(-)$1	243	15	41	23.0588
gggggggxxxxxxxxxxxxxxxgggg	chr11:33162987-33163281(-)$1	294	153	179	19.3090
gggg[bbuuuuuuuuuuuubbggggg	chr9:111848179-111848441(-)$1	262	9	35	24.0793
eee[ddddtttttttttttddddeee	chr4:95376465-95376730(+)$1	265	68	94	21.4545
eeee[bbuuuuuuuuuuuubb22eee	chr2:176042929-176043153(-)$1	224	106	132	22.6848
=======vvvvvvvvvvvvv======	chr4:2009581-2009885(-)$1	304	194	220	24.1519
[ffffffuuuuuuuuuuuuffffff2	chr18:3452024-3452243(+)$1	219	158	184	23.6746
ffff[bbtttttttttttbb]fffff	chrX:118925435-118925638(-)$1	203	11	37	21.5396
]aeeeeevvvvvvvvvvvvveeeee:	chr12:102107794-102108081(+)$1	287	100	126	22.3440
!ffffffwwwwwwwwwwwwwwfffff	chr22:50646812-50647072(+)$1	260	80	106	22.6738
iieeeeeuuuuuuuuuuuueeeee]i	chr8:17863798-17864126(+)$1	328	209	235	24.4273
ffffffyyyyyyyyyyyyyyyyffff	chr4:77957780-77958066(+)$1	286	240	266	21.9546
b!!dddduuuuuuuuuuuudddd22b	chr11:70265880-70266134(+)$1	254	204	230	22.2963
:ffffffvvvvvvvvvvvvvffffff	chr3:52723120-52723414(+)$1	294	190	216	22.2950
&&eeeeeuuuuuuuuuuuueeeee99	chr3:128634297-128634576(+)$1	279	31	57	21.8591
ggggggguuuuuuuuuuuuggggggg	chrX:13336881-13337123(+)$1	242	95	121	24.7558
d!!eeeeettttttttttteeeee]d	chr7:6509280-6509486(-)$1	206	166	192	22.8646
:ccc[bbuuuuuuuuuuuubb]cccb	chr11:77824829-77825085(-)$1	256	24	50	22.1128

#otherMatches

#Seq PSSM
AUUUUCUUCAUGUUGACCCUAGAAAA	chr12:98941438-98941699(+)$1	261	163	189	24.1272
GCUGGGCUGCCACUAUGAUAAUGCCG	chr12:123463444-123463698(+)$1	254	16	42	18.6449
UGUUUCGGUGAACGGUACUACGAUUG	chr10:121336429-121336705(-)$1	276	23	49	23.5572
CCUGGCCCCGCCCUCUUCCGGCCGCC	chr20:32251389-32251631(-)$1	242	81	107	24.1585
UUCCCUCUUAAACUUUCAUGAGGGGA	chr1:12379584-12379865(+)$1	281	171	197	24.4843
ACUUGCAAAAACAGUAACUAAAAUGC	chr10:116623294-116623620(+)$1	326	231	257	21.0636
gccuaguaugaaauugaagaacaaga	chr13:25028991-25029267(-)$1	276	221	247	21.6622
cugcugcuguuucuguuuccucugcu	chr2:70129371-70129699(+)$1	328	231	257	20.7723
CGUGGGGCCCAUUAUUUACGACCCGG	chr17:80708301-80708541(+)$1	240	80	106	22.3246
CAUGUAAUGCCGUAACCUUUUACAAU	chr1:47758928-47759257(-)$1	329	204	230	22.0273
CCAUAUUAAAGCUAUACAAAUAUUUU	chr6:99852270-99852563(-)$1	293	236	262	22.9412
UAAUUUUAACAAACGCAUUAAGAGGU	chr19:3976113-3976331(-)$1	218	93	119	22.6738
UUAGAAAUUUUAGGUUUUUUUUGUAA	chr5:179044531-179044742(-)$1	211	22	48	24.0967
UUCACAUAAUUUGUAUGCAGUGUGAA	chr2:181927424-181927646(+)$1	222	191	217	24.7558
GUCUCUAUUUUGGGUCUUCUAGGGGC	chr2:131904236-131904487(+)$1	251	88	114	24.4843
UUACGGAAAUAAUGAAUUCAAUCCAU	chr5:38945626-38945883(-)$1	257	123	149	22.7609
UUUGCUUAUAGCUCUCACCUGAGCAA	chr1:53333195-53333443(+)$1	248	192	218	23.3469
CUGGCUAUUUUCUCUUCUCGCCGUAG	chr17:8370441-8370690(+)$1	249	88	114	20.2612
CAUGGGUUUGUAAGUUUUACCCAAAC	chr2:242276824-242277096(+)$1	272	143	169	22.3691
UGUGUUAAGCUUUACCAUUAAACACA	chr17:46972960-46973227(+)$1	267	234	260	22.1828
AGUAUACCUAUUAGCUACUGGUCCUU	chr20:33645222-33645464(-)$1	242	151	177	22.1186
UUCUGGGAAAACAACAUUGUCUCGGU	chr13:33109795-33110042(-)$1	247	113	139	22.1978
CUUUGGAGUAAAUUUUAGUUUCUGAG	chr8:126033915-126034176(+)$1	261	22	48	23.2736
UGCAUACACACACACACGCACGUGCA	chr3:141622386-141622659(+)$1	273	20	46	21.7666
UUCUUUAUAAAUUCUGCAAAUCUAAA	chr6:109689939-109690170(-)$1	231	67	93	19.3090
ACACUUGCUUUCUUGAUUCUAGGUGU	chr5:118469063-118469336(+)$1	273	103	129	24.7558
UUAAGUUUGGCCGCACUGAAGACUUA	chr1:25687048-25687322(+)$1	274	113	139	22.3375
UUCUUUACACCUAAUAACAUAAAGCA	chr17:62496606-62496864(-)$1	258	86	112	24.2504
GCCAUGGGGAACCGCAGCACCGCGGA	chr11:637277-637559(+)$1	282	24	50	23.3747
AAUGACAUAACACCUUAUCUUGUCAG	chr6:4056556-4056784(+)$1	228	61	87	20.7609
UGCUGUCUCUAGACUUUUUGGACGAU	chr15:85259154-85259361(-)$1	207	56	82	23.0247
AUGCCCAGUAAAUAAUCUGUGGGCAG	chr6:136596699-136597004(-)$1	305	38	64	23.8902
UACUGCAUUGCUGCCCUUCUGCUUUA	chr7:105738075-105738329(-)$1	254	119	145	23.8834
AGGAAGCUAAAACCAUGUUUGCUUUC	chr7:135612229-135612482(-)$1	253	159	185	24.1272
CUGAUGUGCUUUUCAAACAAAAUGUC	chr18:209922-210169(+)$1	247	194	220	23.5110
CAGUGAGUGCAAAAUCCUCUCGCUCG	chr11:47189517-47189792(-)$1	275	43	69	20.5395
ACAGGAUCUCAGUUCUCCUUUCUUGU	chr2:70131409-70131668(+)$1	259	119	145	22.1828
AAGGGUGGUACCAAAAUGCAUCCCCA	chr19:2425965-2426259(-)$1	294	30	56	21.3195
CUUUAUUUUUUCAUUACUUAAAUGGA	chr6:42646278-42646507(+)$1	229	78	104	22.7865
CUUUGUGCUUUUCCAGUUUGCAAGUU	chr6:131931004-131931333(-)$1	329	90	116	22.9571
UACCUUGAAGAAGAUACCACAAAAUA	chr2:181927415-181927624(+)$1	209	48	74	23.7750
UUAUGGGCCUCUGAAUUUACUUACCU	chr1:224377710-224377988(+)$1	278	220	246	22.3906
GCAACUCAGGCCACAAAUAUGAGUUG	chr5:37327600-37327843(-)$1	243	15	41	23.0588
UAGGACAAGGAGGAUUUAAAUGUGUC	chr11:33162987-33163281(-)$1	294	153	179	19.3090
UCCCUAGUUUUUCCUUUGUCUGGGAU	chr9:111848179-111848441(-)$1	262	9	35	24.0793
GUGUAAGUAAACUUUACAAAUUUUAU	chr4:95376465-95376730(+)$1	265	68	94	21.4545
UGGUUGCUUUCUUGAUUUUGUUUGCC	chr2:176042929-176043153(-)$1	224	106	132	22.6848
AGGUUUGUUUUCUUUUUUCCUAAACU	chr4:2009581-2009885(-)$1	304	194	220	24.1519
CGACCCCCUCUGCGCUCCUGGGGUCC	chr18:3452024-3452243(+)$1	219	158	184	23.6746
GAAGCGCCUUCUAAGCUCGUUCUUCC	chrX:118925435-118925638(-)$1	203	11	37	21.5396
GCACUGGGACUUUUUAUUUACCAGUC	chr12:102107794-102108081(+)$1	287	100	126	22.3440
UUUCCUUUUUCUUAUUUUCACAAGGG	chr22:50646812-50647072(+)$1	260	80	106	22.6738
GGUGGACAUCCAAUCUAGCGUCCAUU	chr8:17863798-17864126(+)$1	328	209	235	24.4273
CUUUCUGACUUUUCAAAAUUAGAGAA	chr4:77957780-77958066(+)$1	286	240	266	21.9546
AAAUGCCCAACUUGAAAACGGCACAU	chr11:70265880-70266134(+)$1	254	204	230	22.2963
AACUCUGAUCUCAGCAAAGCCAGAGU	chr3:52723120-52723414(+)$1	294	190	216	22.2950
CUCCUCUUCCUUCAAGUCCAGGGGCU	chr3:128634297-128634576(+)$1	279	31	57	21.8591
UUAAAGGCAUUAUUUUUCCCCUUUGA	chrX:13336881-13337123(+)$1	242	95	121	24.7558
CGAUGGAAAUCAUGAUACCUUCCGAG	chr7:6509280-6509486(-)$1	206	166	192	22.8646
UUACUGAUAAUGUUCCUUUUCUGUAG	chr11:77824829-77825085(-)$1	256	24	50	22.1128

#DB
(((((((.............))))))	chr12:98941438-98941699(+)$1	1	163	189	24.1272
(((.(((...............))).	chr12:123463444-123463698(+)$1	1	16	42	18.6449
(...(((.............)))...	chr10:121336429-121336705(-)$1	1	23	49	23.5572
..(((((............)))))..	chr20:32251389-32251631(-)$1	1	81	107	24.1585
(((((((............)))))))	chr1:12379584-12379865(+)$1	1	171	197	24.4843
(..((((................)))	chr10:116623294-116623620(+)$1	1	231	257	21.0636
((((.((.............)).)).	chr13:25028991-25029267(-)$1	1	221	247	21.6622
))((.((................)).	chr2:70129371-70129699(+)$1	1	231	257	20.7723
.((.(((..............))).)	chr17:80708301-80708541(+)$1	1	80	106	22.3246
..(((((............)))))..	chr1:47758928-47759257(-)$1	1	204	230	22.0273
..(((((...........)))))...	chr6:99852270-99852563(-)$1	1	236	262	22.9412
.((((((..............)))))	chr19:3976113-3976331(-)$1	1	93	119	22.6738
(((.(((............))).)))	chr5:179044531-179044742(-)$1	1	22	48	24.0967
(((((((............)))))))	chr2:181927424-181927646(+)$1	1	191	217	24.7558
(((((((............)))))))	chr2:131904236-131904487(+)$1	1	88	114	24.4843
(...(((..............)))..	chr5:38945626-38945883(-)$1	1	123	149	22.7609
((((((((...........)))))))	chr1:53333195-53333443(+)$1	1	192	218	23.3469
..(((..............)))((((	chr17:8370441-8370690(+)$1	1	88	114	20.2612
(((((((...........)))))...	chr2:242276824-242277096(+)$1	1	143	169	22.3691
((((((..............))))))	chr17:46972960-46973227(+)$1	1	234	260	22.1828
((...(((...........))).)))	chr20:33645222-33645464(-)$1	1	151	177	22.1186
)))(((((...........))))).(	chr13:33109795-33110042(-)$1	1	113	139	22.1978
.(((((((...........)))))))	chr8:126033915-126034176(+)$1	1	22	48	23.2736
(((((................)))))	chr3:141622386-141622659(+)$1	1	20	46	21.7666
(((((((...............))))	chr6:109689939-109690170(-)$1	1	67	93	19.3090
(((((((............)))))))	chr5:118469063-118469336(+)$1	1	103	129	24.7558
.(((((((...........)))))))	chr1:25687048-25687322(+)$1	1	113	139	22.3375
(.(((((............))))).)	chr17:62496606-62496864(-)$1	1	86	112	24.2504
(((.(((............))).)).	chr11:637277-637559(+)$1	1	24	50	23.3747
..(((((.............))))).	chr6:4056556-4056784(+)$1	1	61	87	20.7609
(..(((((...........)))))))	chr15:85259154-85259361(-)$1	1	56	82	23.0247
(((((((............)))))).	chr6:136596699-136597004(-)$1	1	38	64	23.8902
((..(((............)))..))	chr7:105738075-105738329(-)$1	1	119	145	23.8834
(((((((.............))))))	chr7:135612229-135612482(-)$1	1	159	185	24.1272
(((((((..............)))))	chr18:209922-210169(+)$1	1	194	220	23.5110
)((((((...........)))))).(	chr11:47189517-47189792(-)$1	1	43	69	20.5395
((((((..............))))))	chr2:70131409-70131668(+)$1	1	119	145	22.1828
..(((((...........))))))))	chr19:2425965-2426259(-)$1	1	30	56	21.3195
((((((((...........)))))))	chr6:42646278-42646507(+)$1	1	78	104	22.7865
)))))(((...........)))(((.	chr6:131931004-131931333(-)$1	1	90	116	22.9571
(...(((............))).)))	chr2:181927415-181927624(+)$1	1	48	74	23.7750
((..(((................)))	chr1:224377710-224377988(+)$1	1	220	246	22.3906
((((((((...........)))))))	chr5:37327600-37327843(-)$1	1	15	41	23.0588
(((((((...............))))	chr11:33162987-33163281(-)$1	1	153	179	19.3090
((((.((............)))))))	chr9:111848179-111848441(-)$1	1	9	35	24.0793
(((.((((...........)))))))	chr4:95376465-95376730(+)$1	1	68	94	21.4545
((((.((............))..)))	chr2:176042929-176043153(-)$1	1	106	132	22.6848
(((((((.............))))))	chr4:2009581-2009885(-)$1	1	194	220	24.1519
.((((((............)))))).	chr18:3452024-3452243(+)$1	1	158	184	23.6746
((((.((...........)).)))))	chrX:118925435-118925638(-)$1	1	11	37	21.5396
.)(((((.............))))).	chr12:102107794-102108081(+)$1	1	100	126	22.3440
.((((((..............)))))	chr22:50646812-50647072(+)$1	1	80	106	22.6738
(((((((............))))).)	chr8:17863798-17864126(+)$1	1	209	235	24.4273
((((((................))))	chr4:77957780-77958066(+)$1	1	240	266	21.9546
(..((((............))))..)	chr11:70265880-70266134(+)$1	1	204	230	22.2963
.((((((.............))))))	chr3:52723120-52723414(+)$1	1	190	216	22.2950
..(((((............)))))..	chr3:128634297-128634576(+)$1	1	31	57	21.8591
(((((((............)))))))	chrX:13336881-13337123(+)$1	1	95	121	24.7558
(..(((((...........))))).)	chr7:6509280-6509486(-)$1	1	166	192	22.8646
.(((.((............)).)))(	chr11:77824829-77825085(-)$1	1	24	50	22.1128

#PSSM
g : 0.18	d : 0.11	e : 0.09	i : 0.09	! : 0.08	: : 0.08	c : 0.06	f : 0.06	b : 0.05	[ : 0.03	& : 0.03	= : 0.03	h : 0.01	% : 0.01	] : 0.01	
g : 0.21	f : 0.16	! : 0.09	i : 0.09	e : 0.08	c : 0.06	" : 0.05	b : 0.03	& : 0.03	= : 0.03	: : 0.03	d : 0.03	[ : 0.01	% : 0.01	a : 0.01	
e : 0.24	g : 0.21	f : 0.16	! : 0.09	" : 0.06	i : 0.06	b : 0.06	= : 0.03	c : 0.03	
e : 0.24	g : 0.19	f : 0.16	[ : 0.08	" : 0.06	i : 0.06	d : 0.03	b : 0.03	= : 0.03	c : 0.03	! : 0.03	
e : 0.23	g : 0.18	c : 0.16	f : 0.15	[ : 0.09	i : 0.06	d : 0.05	= : 0.03	" : 0.01	
e : 0.21	g : 0.18	c : 0.18	f : 0.15	b : 0.09	i : 0.05	d : 0.05	= : 0.03	w : 0.01	y : 0.01	
e : 0.21	g : 0.18	c : 0.18	b : 0.09	f : 0.09	i : 0.05	d : 0.05	w : 0.05	= : 0.03	y : 0.03	
u : 0.33	v : 0.13	w : 0.13	y : 0.08	t : 0.08	x : 0.05	e : 0.05	g : 0.05	c : 0.03	= : 0.01	i : 0.01	d : 0.01	
u : 0.33	t : 0.26	v : 0.13	w : 0.13	y : 0.08	x : 0.05	
u : 0.33	t : 0.26	v : 0.13	w : 0.13	y : 0.08	x : 0.05	
u : 0.33	t : 0.26	v : 0.13	w : 0.13	y : 0.08	x : 0.05	
u : 0.33	t : 0.26	v : 0.13	w : 0.13	y : 0.08	x : 0.05	
u : 0.33	t : 0.26	v : 0.13	w : 0.13	y : 0.08	x : 0.05	
u : 0.33	t : 0.26	v : 0.13	w : 0.13	y : 0.08	x : 0.05	
u : 0.33	t : 0.26	v : 0.13	w : 0.13	y : 0.08	x : 0.05	
u : 0.33	t : 0.26	v : 0.13	w : 0.13	y : 0.08	x : 0.05	
u : 0.33	t : 0.26	v : 0.13	w : 0.13	y : 0.08	x : 0.05	
u : 0.33	t : 0.26	v : 0.13	w : 0.13	y : 0.08	x : 0.05	
u : 0.33	t : 0.18	v : 0.13	w : 0.13	y : 0.08	x : 0.05	e : 0.05	f : 0.01	b : 0.01	
e : 0.18	v : 0.13	w : 0.11	c : 0.11	g : 0.09	y : 0.08	b : 0.06	x : 0.05	i : 0.05	f : 0.05	d : 0.03	= : 0.01	
e : 0.21	g : 0.13	c : 0.13	f : 0.09	y : 0.08	w : 0.08	b : 0.06	x : 0.05	i : 0.05	= : 0.03	d : 0.03	] : 0.01	
e : 0.23	g : 0.16	c : 0.16	f : 0.15	y : 0.06	x : 0.05	i : 0.05	= : 0.03	d : 0.03	b : 0.01	2 : 0.01	] : 0.01	
e : 0.23	g : 0.21	f : 0.16	c : 0.09	] : 0.08	i : 0.05	y : 0.05	= : 0.03	2 : 0.03	d : 0.03	
e : 0.23	g : 0.21	f : 0.16	c : 0.11	3 : 0.05	i : 0.05	d : 0.05	b : 0.05	= : 0.03	2 : 0.03	
g : 0.21	f : 0.15	c : 0.11	e : 0.09	] : 0.06	3 : 0.05	i : 0.05	d : 0.05	b : 0.05	2 : 0.03	= : 0.03	: : 0.03	7 : 0.01	4 : 0.01	9 : 0.01	
g : 0.23	f : 0.11	] : 0.08	e : 0.08	i : 0.06	d : 0.06	c : 0.06	3 : 0.05	b : 0.05	2 : 0.03	= : 0.03	: : 0.03	7 : 0.01	4 : 0.01	F : 0.01	! : 0.01	9 : 0.01	

#score	1358.765613618295
#seq	60
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_transcript_m3_run1.txt

#BEAR
ffff[aqqqqqqqqa]ffff	chr1:145440474-145440730(+)$1	256	158	178	13.6667
!bbcccqqqqqqqqccc]bb	chr2:27261339-27261582(+)$1	243	97	117	13.5426
eeee[aqqqqqqqqa]eeee	chr5:134704897-134705166(-)$1	269	223	243	14.4318
eeddddqqqqqqqqdddd33	chr4:68529448-68529721(-)$1	273	94	114	14.6265
!!ddddqqqqqqqqdddd22	chrX:16871546-16871813(-)$1	267	29	49	14.5277
ffffffqqqqqqqqffffff	chr19:42740305-42740552(-)$1	247	142	162	13.4913
ffffffqqqqqqqqffffff	chr16:53500949-53501302(+)$1	353	73	93	13.4913
ccc!!aqqqqqqqqa22ccc	chr5:158600724-158601009(-)$1	285	26	46	13.3772
eeddddqqqqqqqqdddd:E	chr1:44441588-44441861(+)$1	273	124	144	12.6975
ffffffqqqqqqqqffffff	chr18:47803001-47803271(-)$1	270	205	225	13.4913
:eeeeeqqqqqqqqeeeee:	chr15:93426560-93426891(+)$1	331	277	297	13.0345
a[ddddqqqqqqqqdddd]a	chr3:15076249-15076503(+)$1	254	216	236	14.5971
ggggggqqqqqqqqgggggg	chr9:125895011-125895274(-)$1	263	174	194	14.2872
ddd[bbqqqqqqqqbbdddd	chr7:99950833-99951059(+)$1	226	122	142	13.3506
$$ddddqqqqqqqqdddd33	chr1:70639066-70639392(-)$1	326	222	242	14.2580
e!!cccqqqqqqqqccc]ee	chr3:48637282-48637563(-)$1	281	138	158	14.6153
:eeeeeqqqqqqqqeeeee:	chr1:12014940-12015206(+)$1	266	24	44	13.0345
dd[cccqqqqqqqqccc333	chr12:57922294-57922627(+)$1	333	5	25	14.4916
!eeeeeqqqqqqqqeeeee]	chr20:45918667-45918933(-)$1	266	190	210	14.9723
[a[cccqqqqqqqqccc]a]	chr2:111417358-111417636(-)$1	278	192	212	14.6576
eeecccqqqqqqqqccc]ee	chr10:103870633-103870902(-)$1	269	43	63	14.6429
!eeeeeqqqqqqqqeeeee]	chr3:197899325-197899651(+)$1	326	292	312	14.9723
ddd[bbqqqqqqqqbb]ddd	chrX:118708697-118708923(+)$1	226	1	21	13.2959
ggg[bbqqqqqqqqbbgggg	chr5:179050404-179050655(-)$1	251	123	143	13.6959
$$$cccqqqqqqqqccc666	chr9:131750411-131750702(+)$1	291	137	157	12.4051
ccddddqqqqqqqqdddd]c	chr3:56591207-56591519(+)$1	312	241	261	14.4174
d[ddddqqqqqqqqdddd]d	chr3:172480557-172480835(+)$1	278	65	85	14.4368
gggg[aqqqqqqqqa]gggg	chr5:647961-648234(+)$1	273	114	134	14.2580
!!ddddqqqqqqqqdddd]d	chr9:114659605-114659858(+)$1	253	99	119	14.6924
ffffffqqqqqqqqffffff	chr7:128485253-128485537(+)$1	284	239	259	13.4913
cc!!bbqqqqqqqqbb]ccc	chr1:153724859-153725154(+)$1	295	127	147	13.3997
ccddddqqqqqqqqddddEE	chr6:37138572-37138875(+)$1	303	130	150	12.5020
eee[bbqqqqqqqqbb]eee	chr19:6415617-6415892(-)$1	275	64	84	13.7608
eee[bbqqqqqqqqbb22ee	chr5:133710062-133710360(+)$1	298	195	215	13.2798
!eeeeeqqqqqqqqeeeeee	chr5:137507651-137507906(-)$1	255	155	175	14.7969
!eeeeeqqqqqqqqeeeee]	chr21:46911965-46912195(+)$1	230	50	70	14.9723
b[bb[aqqqqqqqqa]bb]b	chr9:131029919-131030203(-)$1	284	147	167	12.5158
ffffffqqqqqqqqffffff	chrX:20194895-20195168(-)$1	273	222	242	13.4913
[eeeeeqqqqqqqqeeeeeb	chr17:80054957-80055240(-)$1	283	190	210	14.6047
eeacccqqqqqqqqccc22a	chrX:65390562-65390800(+)$1	238	116	136	14.1360
###cccqqqqqqqqccc22g	chr17:62501681-62501940(-)$1	259	25	45	14.0911
ggggggqqqqqqqqgggggg	chr19:46285188-46285501(-)$1	313	105	125	14.2872
d[ddddqqqqqqqqdddddd	chr11:823522-823808(+)$1	286	104	124	14.2663
!eeeeeqqqqqqqqeeeee2	chr1:38166121-38166369(+)$1	248	166	186	14.7910
ffffffqqqqqqqqffffff	chrX:153580741-153580984(-)$1	243	221	241	13.4913
[eeeeeqqqqqqqqeeeee]	chr17:73900662-73900952(-)$1	290	104	124	14.9164
!eeeeeqqqqqqqqeeeee2	chr4:80993333-80993654(-)$1	321	239	259	14.7910
dddcccqqqqqqqqccc]dd	chr6:33382104-33382345(+)$1	241	203	223	14.2179
!!ddddqqqqqqqqdddd22	chr5:137909601-137909896(-)$1	295	32	52	14.5277
ccddddqqqqqqqqdddd:f	chrX:48673072-48673337(+)$1	265	109	129	13.4099
ddddbbqqqqqqqqbb]ddd	chr19:59060943-59061185(+)$1	242	191	211	13.2866
ggggggqqqqqqqqgggggg	chr1:173835246-173835452(-)$1	206	30	50	14.2872
d[ddddqqqqqqqqdddddd	chr6:43745331-43745552(+)$1	221	124	144	14.2663
ggggggqqqqqqqqgggggg	chr6:7182253-7182492(+)$1	239	117	137	14.2872
ggggggqqqqqqqqgggggg	chr1:173835227-173835446(-)$1	219	24	44	14.2872
Ceeeeeqqqqqqqqeeeee:	chr19:15482856-15483120(-)$1	264	214	234	12.8542
d!!cccqqqqqqqqccc]dd	chr6:161507471-161507749(+)$1	278	135	155	14.4213
bb[cccqqqqqqqqccc]bb	chr16:74949864-74950125(-)$1	261	91	111	13.4482
aeeeeeqqqqqqqqeeeee]	chr6:43589779-43590055(-)$1	276	172	192	14.7834

#otherMatches

#Seq PSSM
UCUAUGUUAGCGUUCCUGGA	chr1:145440474-145440730(+)$1	256	158	178	13.6667
UCUGGAUUCUAGGUUCUGAG	chr2:27261339-27261582(+)$1	243	97	117	13.5426
GCUAGUCCAACACAAGUAGC	chr5:134704897-134705166(-)$1	269	223	243	14.4318
UAUUGUGGAUUUUAGCAACC	chr4:68529448-68529721(-)$1	273	94	114	14.6265
GGAUCUUGUUAAAUGGGUGA	chrX:16871546-16871813(-)$1	267	29	49	14.5277
GAGGCCAGAGUUCGGGCCUU	chr19:42740305-42740552(-)$1	247	142	162	13.4913
CCCUUUGACUCCCAGAAGGG	chr16:53500949-53501302(+)$1	353	73	93	13.4913
AUAAGAGCCUAUGAUACUAU	chr5:158600724-158601009(-)$1	285	26	46	13.3772
CCGCUUCCCUGCUAGAGCUG	chr1:44441588-44441861(+)$1	273	124	144	12.6975
GCAGCGGCUCAAAACGUUGU	chr18:47803001-47803271(-)$1	270	205	225	13.4913
AACCUCUUUCCGGUGAGGUG	chr15:93426560-93426891(+)$1	331	277	297	13.0345
CACAGCAUCCAUAGGCUGAG	chr3:15076249-15076503(+)$1	254	216	236	14.5971
UGGCCCCCUUUACUGGGCCG	chr9:125895011-125895274(-)$1	263	174	194	14.2872
AAGCUGUACAGACUCACUUG	chr7:99950833-99951059(+)$1	226	122	142	13.3506
AUAUCUACGAAGCAAGAUCA	chr1:70639066-70639392(-)$1	326	222	242	14.2580
CCUGGCAUAGCGCAGCCUGC	chr3:48637282-48637563(-)$1	281	138	158	14.6153
CGGGGAGGGGUGGAUCCUCA	chr1:12014940-12015206(+)$1	266	24	44	13.0345
CCAAGGAUCCACCCCCUCCC	chr12:57922294-57922627(+)$1	333	5	25	14.4916
UGCAGCUGCAUGGUGCUGCU	chr20:45918667-45918933(-)$1	266	190	210	14.9723
GUUAGAUUUCCUAUUCUUAG	chr2:111417358-111417636(-)$1	278	192	212	14.6576
UGAGCUUAACAAACGGCUUC	chr10:103870633-103870902(-)$1	269	43	63	14.6429
gcuuagggcuagggcuaggg	chr3:197899325-197899651(+)$1	326	292	312	14.9723
CUCAUGCGGGACUUCAAGAG	chrX:118708697-118708923(+)$1	226	1	21	13.2959
GCGAGCUGCAGGCUGCCGUC	chr5:179050404-179050655(-)$1	251	123	143	13.6959
UUUUUGGAUGUCAACAGUAU	chr9:131750411-131750702(+)$1	291	137	157	12.4051
GGGUCGGCCCUUAGCGACUC	chr3:56591207-56591519(+)$1	312	241	261	14.4174
UUUUAAAAACACUAUUAAUA	chr3:172480557-172480835(+)$1	278	65	85	14.4368
CCAGGUACAGGGAGGGUUGG	chr5:647961-648234(+)$1	273	114	134	14.2580
AAAGCUGAUCGUCAGGCUGU	chr9:114659605-114659858(+)$1	253	99	119	14.6924
GGGGGUGGAGAUUGGCCUCU	chr7:128485253-128485537(+)$1	284	239	259	13.4913
GUGGUCAGAUUUAGGAAGCC	chr1:153724859-153725154(+)$1	295	127	147	13.3997
ACGGGCGUGCUUUAGCCCGG	chr6:37138572-37138875(+)$1	303	130	150	12.5020
CAUGACCCAAGUAAGUGAUG	chr19:6415617-6415892(-)$1	275	64	84	13.7608
CUUAAGGACUAAAACUGCAA	chr5:133710062-133710360(+)$1	298	195	215	13.2798
AAGUUCCCAAGCAAGGGCUC	chr5:137507651-137507906(-)$1	255	155	175	14.7969
ACAGGCAGGAGAGGGCUUGC	chr21:46911965-46912195(+)$1	230	50	70	14.9723
AGUUGUGCACAUGAAGGAGU	chr9:131029919-131030203(-)$1	284	147	167	12.5158
cuugaguccaggaguucaag	chrX:20194895-20195168(-)$1	273	222	242	13.4913
UGGUUCUCCAGGUUGGACCC	chr17:80054957-80055240(-)$1	283	190	210	14.6047
GCCAGCUCCUGAUUGCUCCG	chrX:65390562-65390800(+)$1	238	116	136	14.1360
UUGUGCGGAUGAAAGCGGGA	chr17:62501681-62501940(-)$1	259	25	45	14.0911
AGGUCUGGGCACAGAGGCCU	chr19:46285188-46285501(-)$1	313	105	125	14.2872
CUCUGCUACCCCCUGCGGGC	chr11:823522-823808(+)$1	286	104	124	14.2663
UAGUAGAGAUGAUCCUACUU	chr1:38166121-38166369(+)$1	248	166	186	14.7910
CCAUGAGGCCGAGAUCGUGG	chrX:153580741-153580984(-)$1	243	221	241	13.4913
UCGCCCGAGCUGUGGGGCGC	chr17:73900662-73900952(-)$1	290	104	124	14.9164
AGCGCGUUCGGAUCUGUGUG	chr4:80993333-80993654(-)$1	321	239	259	14.7910
AGCCACAAGGACCGGUGAGU	chr6:33382104-33382345(+)$1	241	203	223	14.2179
UCCCAGGAUACACACUGGUU	chr5:137909601-137909896(-)$1	295	32	52	14.5277
UGGCCUUGAAGGUUAGGCUG	chrX:48673072-48673337(+)$1	265	109	129	13.4099
CUCCCUGACCUGAAGGAGGA	chr19:59060943-59061185(+)$1	242	191	211	13.2866
GCUGUUAAUGGUUAAGCAGU	chr1:173835246-173835452(-)$1	206	30	50	14.2872
UUGGGAACAGGUGGUCCCAG	chr6:43745331-43745552(+)$1	221	124	144	14.2663
GGAGAUGUUUCCGAGUUUCC	chr6:7182253-7182492(+)$1	239	117	137	14.2872
GCUGUUAAUGGUUAAGCAGU	chr1:173835227-173835446(-)$1	219	24	44	14.2872
UCAGGGCAGACUCACCCUGG	chr19:15482856-15483120(-)$1	264	214	234	12.8542
UGAUCCUAGGACCUGGAAAU	chr6:161507471-161507749(+)$1	278	135	155	14.4213
GAGGAAGAAGGUAAUUUGUC	chr16:74949864-74950125(-)$1	261	91	111	13.4482
GAGAUGAAUCCUACCAUCUG	chr6:43589779-43590055(-)$1	276	172	192	14.7834

#DB
((((.(........).))))	chr1:145440474-145440730(+)$1	1	158	178	13.6667
.(((((........))).))	chr2:27261339-27261582(+)$1	1	97	117	13.5426
((((.(........).))))	chr5:134704897-134705166(-)$1	1	223	243	14.4318
((((((........))))..	chr4:68529448-68529721(-)$1	1	94	114	14.6265
..((((........))))..	chrX:16871546-16871813(-)$1	1	29	49	14.5277
((((((........))))))	chr19:42740305-42740552(-)$1	1	142	162	13.4913
((((((........))))))	chr16:53500949-53501302(+)$1	1	73	93	13.4913
(((..(........)..)))	chr5:158600724-158601009(-)$1	1	26	46	13.3772
))((((........)))).)	chr1:44441588-44441861(+)$1	1	124	144	12.6975
((((((........))))))	chr18:47803001-47803271(-)$1	1	205	225	13.4913
.(((((........))))).	chr15:93426560-93426891(+)$1	1	277	297	13.0345
(.((((........)))).)	chr3:15076249-15076503(+)$1	1	216	236	14.5971
((((((........))))))	chr9:125895011-125895274(-)$1	1	174	194	14.2872
(((.((........))))))	chr7:99950833-99951059(+)$1	1	122	142	13.3506
..((((........))))..	chr1:70639066-70639392(-)$1	1	222	242	14.2580
(..(((........))).))	chr3:48637282-48637563(-)$1	1	138	158	14.6153
.(((((........))))).	chr1:12014940-12015206(+)$1	1	24	44	13.0345
((.(((........)))...	chr12:57922294-57922627(+)$1	1	5	25	14.4916
.(((((........))))).	chr20:45918667-45918933(-)$1	1	190	210	14.9723
.(.(((........))).).	chr2:111417358-111417636(-)$1	1	192	212	14.6576
((((((........))).))	chr10:103870633-103870902(-)$1	1	43	63	14.6429
.(((((........))))).	chr3:197899325-197899651(+)$1	1	292	312	14.9723
(((.((........)).)))	chrX:118708697-118708923(+)$1	1	1	21	13.2959
(((.((........))))))	chr5:179050404-179050655(-)$1	1	123	143	13.6959
...(((........)))...	chr9:131750411-131750702(+)$1	1	137	157	12.4051
((((((........)))).)	chr3:56591207-56591519(+)$1	1	241	261	14.4174
(.((((........)))).)	chr3:172480557-172480835(+)$1	1	65	85	14.4368
((((.(........).))))	chr5:647961-648234(+)$1	1	114	134	14.2580
..((((........)))).)	chr9:114659605-114659858(+)$1	1	99	119	14.6924
((((((........))))))	chr7:128485253-128485537(+)$1	1	239	259	13.4913
((..((........)).)))	chr1:153724859-153725154(+)$1	1	127	147	13.3997
))((((........))))))	chr6:37138572-37138875(+)$1	1	130	150	12.5020
(((.((........)).)))	chr19:6415617-6415892(-)$1	1	64	84	13.7608
(((.((........))..))	chr5:133710062-133710360(+)$1	1	195	215	13.2798
.(((((........))))))	chr5:137507651-137507906(-)$1	1	155	175	14.7969
.(((((........))))).	chr21:46911965-46912195(+)$1	1	50	70	14.9723
(.((.(........).)).)	chr9:131029919-131030203(-)$1	1	147	167	12.5158
((((((........))))))	chrX:20194895-20195168(-)$1	1	222	242	13.4913
.(((((........))))))	chr17:80054957-80055240(-)$1	1	190	210	14.6047
((((((........)))..)	chrX:65390562-65390800(+)$1	1	116	136	14.1360
...(((........)))..)	chr17:62501681-62501940(-)$1	1	25	45	14.0911
((((((........))))))	chr19:46285188-46285501(-)$1	1	105	125	14.2872
(.((((........))))))	chr11:823522-823808(+)$1	1	104	124	14.2663
.(((((........))))).	chr1:38166121-38166369(+)$1	1	166	186	14.7910
((((((........))))))	chrX:153580741-153580984(-)$1	1	221	241	13.4913
.(((((........))))).	chr17:73900662-73900952(-)$1	1	104	124	14.9164
.(((((........))))).	chr4:80993333-80993654(-)$1	1	239	259	14.7910
((((((........))).))	chr6:33382104-33382345(+)$1	1	203	223	14.2179
..((((........))))..	chr5:137909601-137909896(-)$1	1	32	52	14.5277
))((((........)))).(	chrX:48673072-48673337(+)$1	1	109	129	13.4099
((((((........)).)))	chr19:59060943-59061185(+)$1	1	191	211	13.2866
((((((........))))))	chr1:173835246-173835452(-)$1	1	30	50	14.2872
(.((((........))))))	chr6:43745331-43745552(+)$1	1	124	144	14.2663
((((((........))))))	chr6:7182253-7182492(+)$1	1	117	137	14.2872
((((((........))))))	chr1:173835227-173835446(-)$1	1	24	44	14.2872
)(((((........))))).	chr19:15482856-15483120(-)$1	1	214	234	12.8542
(..(((........))).))	chr6:161507471-161507749(+)$1	1	135	155	14.4213
((.(((........))).))	chr16:74949864-74950125(-)$1	1	91	111	13.4482
((((((........))))).	chr6:43589779-43590055(-)$1	1	172	192	14.7834

#PSSM
! : 0.16	d : 0.15	e : 0.13	f : 0.11	g : 0.11	c : 0.08	[ : 0.05	: : 0.03	a : 0.03	$ : 0.03	b : 0.03	# : 0.01	C : 0.01	
e : 0.32	f : 0.11	g : 0.11	! : 0.08	c : 0.08	[ : 0.08	d : 0.08	b : 0.03	$ : 0.03	a : 0.01	# : 0.01	
d : 0.28	e : 0.27	f : 0.11	g : 0.11	! : 0.05	[ : 0.05	b : 0.03	c : 0.01	$ : 0.01	a : 0.01	# : 0.01	
d : 0.23	e : 0.22	c : 0.18	f : 0.11	g : 0.10	[ : 0.08	! : 0.03	b : 0.01	
d : 0.22	e : 0.20	c : 0.18	b : 0.11	f : 0.10	g : 0.08	[ : 0.06	! : 0.01	
d : 0.22	e : 0.20	c : 0.18	b : 0.11	f : 0.10	a : 0.08	g : 0.08	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.22	e : 0.20	c : 0.18	b : 0.11	f : 0.10	a : 0.08	g : 0.08	
d : 0.22	e : 0.20	c : 0.18	b : 0.11	f : 0.10	g : 0.08	] : 0.06	2 : 0.01	
d : 0.23	e : 0.22	c : 0.18	f : 0.11	g : 0.11	] : 0.06	2 : 0.03	b : 0.01	
d : 0.27	e : 0.23	f : 0.11	] : 0.11	g : 0.11	2 : 0.05	c : 0.03	3 : 0.01	6 : 0.01	b : 0.01	
e : 0.28	f : 0.11	g : 0.11	d : 0.11	] : 0.08	2 : 0.06	3 : 0.05	b : 0.03	c : 0.03	: : 0.03	a : 0.01	6 : 0.01	E : 0.01	
d : 0.15	f : 0.13	g : 0.13	e : 0.10	] : 0.10	b : 0.06	2 : 0.06	3 : 0.05	c : 0.05	: : 0.05	E : 0.03	a : 0.03	6 : 0.01	

#score	825.1239642122381
#seq	59
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_CDS_m3_run2.txt

#BEAR
HHHHHHHZZZDDDD}CC	chr16:279049-279353(-)$1	304	258	275	11.1139
?FFFFFFYYEEEEEZZZ	chr16:87377026-87377317(-)$1	291	267	284	9.0835
HHHHHHHHEEEEEZZZD	chr14:104145831-104146092(+)$1	261	231	248	8.9828
HHHHHHHHYYEEEEECC	chr1:1019547-1019802(-)$1	255	213	230	10.7998
GGGGGGGYYFFFFFF~~	chr16:28847368-28847611(+)$1	243	206	223	10.9158
GGGGGGGYYBB}EEEEE	chr20:48759844-48760142(-)$1	298	254	271	11.7500
:FFFFFFZZZCCC::::	chr2:71577016-71577254(+)$1	238	219	236	8.3271
FFFFFF}BB~~~~DDDD	chr9:97842981-97843250(+)$1	269	251	268	8.8707
GGGGGGGZZZEEEEEZZ	chr3:38167813-38168084(-)$1	271	238	255	12.4037
GGGGGGG?????EEEEE	chr20:49508411-49508688(-)$1	277	234	251	9.5781
GGGGGGGZZZDDDD}CC	chr1:46073462-46073734(+)$1	272	228	245	11.5544
}FFFFFF}DDDDYYBBG	chr19:40740778-40741039(-)$1	261	235	252	8.4283
IIIIIII}CCC}DDDD}	chr1:1341005-1341257(-)$1	252	228	245	8.3460
HHHHHHH}AYYJJJJJJ	chr19:1271398-1271635(+)$1	237	156	173	8.9603
GGGGGGG}EEEEE}BB}	chr1:36755036-36755288(+)$1	252	181	198	11.4660
GGGGGGGBB}HHHHHHH	chr1:193028837-193029097(+)$1	260	221	238	8.4628
GGGGGGG}BB}EEEEE}	chr9:139752458-139752721(+)$1	263	158	175	12.0074
HHHHHHHHFFFFFF:::	chr7:142962140-142962388(+)$1	248	175	192	7.5098
:FFFFFFYYDDDD::::	chr22:31654325-31654604(+)$1	279	195	212	7.4804
FFFF}AZZZCCCEEEEE	chr22:20112884-20113126(+)$1	242	175	192	8.5214
GGGGGGGYYFFFFFFCC	chr21:37417701-37417951(-)$1	250	168	185	10.8699
IIIIIII}A}EEEEE::	chr17:79532338-79532603(-)$1	265	231	248	9.9342
GGG}CCCZZZFFFFFFA	chr7:73021517-73021726(-)$1	209	160	177	8.5043
HHHHHHHBB:::EEEEE	chr1:43212733-43213023(-)$1	290	19	36	9.1155
:FFFFFFYYEEEEECCC	chr7:137569556-137569801(-)$1	245	227	244	10.1458
FFGGGGGGGZZZEEEEE	chr9:74979409-74979681(-)$1	272	255	272	8.0916
HHHHHHH}BB}CCCbb!	chr5:73931516-73931771(-)$1	255	216	233	7.9573
HHHHHHHZZZHHHHHHH	chr16:66864539-66864852(-)$1	313	222	239	8.9030
HHHHHHHZZZCCC}GGG	chr17:42953132-42953415(-)$1	283	259	276	9.7569
:FFFFFF}FFFFFFYYB	chr7:150020569-150020829(+)$1	260	214	231	8.9749
cFFFFFFZZZCCC}CCC	chr8:6566346-6566593(+)$1	247	224	241	9.3672
:FFFFFFYYEEEEE}CC	chr21:45507700-45507977(+)$1	277	241	258	10.3973
GGGGGGG~~~~FFFFFF	chr3:9965632-9965874(+)$1	242	134	151	11.2420
GGGGGGGYYA}BB}DDD	chr16:88877768-88878041(-)$1	273	252	269	10.4990
:FFFFFF}EEEEE::::	chr1:11898639-11898887(+)$1	248	184	201	8.2160
cFFFFFF}CCCYYFFFF	chr4:76439214-76439465(-)$1	251	232	249	8.3490
HHHHHHHZZZDDDDYYE	chr6:35454069-35454358(-)$1	289	249	266	11.2557
HHHHHHHYYFFFFFF}B	chr5:140021294-140021545(+)$1	251	210	227	10.6057
EEEE}BB}A}EEEEE::	chr21:45557104-45557358(+)$1	254	170	187	7.1210
GGGGGGGZZZEEEEE}E	chr1:78098328-78098595(-)$1	267	222	239	12.7180
CFFFFFFBB}DDDDYYB	chr17:17720834-17721085(-)$1	251	83	100	9.2572
GGGGGGG~~~~CCC:::	chr22:39709025-39709302(-)$1	277	256	273	10.0434

#otherMatches

#Seq PSSM
CGUGGGUCCAGGUCGGG	chr16:279049-279353(-)$1	304	258	275	11.1139
UACGCCUCCGUGGCGCA	chr16:87377026-87377317(-)$1	291	267	284	9.0835
UUUUCUUCUCAGGAAUC	chr14:104145831-104146092(+)$1	261	231	248	8.9828
AGGCAGGGCCAGGGCCG	chr1:1019547-1019802(-)$1	255	213	230	10.7998
GGUGGGGAGUGAGGGGU	chr16:28847368-28847611(+)$1	243	206	223	10.9158
cagcaccucccugcagc	chr20:48759844-48760142(-)$1	298	254	271	11.7500
CUUUGGUAUUGUGAAAG	chr2:71577016-71577254(+)$1	238	219	236	8.3271
CCUCUCUCAAUGUCUUU	chr9:97842981-97843250(+)$1	269	251	268	8.8707
CAGUUUGCCCCUAGGAA	chr3:38167813-38168084(-)$1	271	238	255	12.4037
GGUUCAAAAUACGAAAC	chr20:49508411-49508688(-)$1	277	234	251	9.5781
GAGGCUCCAGUUCUCCC	chr1:46073462-46073734(+)$1	272	228	245	11.5544
CUGUUGGUCCUCUUUGG	chr19:40740778-40741039(-)$1	261	235	252	8.4283
guguccauguuaagugu	chr1:1341005-1341257(-)$1	252	228	245	8.3460
GGGGACCGAGGCUAUGG	chr19:1271398-1271635(+)$1	237	156	173	8.9603
GCUCAUCACCUCCCCCA	chr1:36755036-36755288(+)$1	252	181	198	11.4660
CGCCUGUCCACCCUGGG	chr1:193028837-193029097(+)$1	260	221	238	8.4628
GCCCUGCCCUGCACCCG	chr9:139752458-139752721(+)$1	263	158	175	12.0074
CCCCGCACCGCCUUCCU	chr7:142962140-142962388(+)$1	248	175	192	7.5098
UCUCCCUUUAUUUauuc	chr22:31654325-31654604(+)$1	279	195	212	7.4804
GGCAGUAACUGGGAAGU	chr22:20112884-20113126(+)$1	242	175	192	8.5214
AGGUGUCGGCGGCUUCA	chr21:37417701-37417951(-)$1	250	168	185	10.8699
UGCCAGGCACGUGGCAG	chr17:79532338-79532603(-)$1	265	231	248	9.9342
CCCCCGAGCUUGCGCCC	chr7:73021517-73021726(-)$1	209	160	177	8.5043
CCAGGGGGCAGCGCUGU	chr1:43212733-43213023(-)$1	290	19	36	9.1155
AUCCACUGGACUGCGGC	chr7:137569556-137569801(-)$1	245	227	244	10.1458
CGUGGCCCGAGACCUGG	chr9:74979409-74979681(-)$1	272	255	272	8.0916
GGAGGAACUCAUCACCA	chr5:73931516-73931771(-)$1	255	216	233	7.9573
GCCGUGCGGGGCGCGGG	chr16:66864539-66864852(-)$1	313	222	239	8.9030
AGGGGUUGACUUCAUAC	chr17:42953132-42953415(-)$1	283	259	276	9.7569
aacagccagcccuuacc	chr7:150020569-150020829(+)$1	260	214	231	8.9749
CGUUCUGCCGAGAUCGC	chr8:6566346-6566593(+)$1	247	224	241	9.3672
GCAGUUCUGUCUGUCUG	chr21:45507700-45507977(+)$1	277	241	258	10.3973
GUGCCAUAUCAGAGAGG	chr3:9965632-9965874(+)$1	242	134	151	11.2420
GAGGCCGCCGCGCUGUG	chr16:88877768-88878041(-)$1	273	252	269	10.4990
GGGGAGAGUGUGGCCCA	chr1:11898639-11898887(+)$1	248	184	201	8.2160
CCCACCUUUCCUACCUG	chr4:76439214-76439465(-)$1	251	232	249	8.3490
UGUCUGGAUCCUCCUCC	chr6:35454069-35454358(-)$1	289	249	266	11.2557
CCCUGCUGCAGCUUGAG	chr5:140021294-140021545(+)$1	251	210	227	10.6057
AUGGGAGGGGGUGGUGA	chr21:45557104-45557358(+)$1	254	170	187	7.1210
AACACUAAACAAAAUAG	chr1:78098328-78098595(-)$1	267	222	239	12.7180
CCUGCCACGGUGCCCCC	chr17:17720834-17721085(-)$1	251	83	100	9.2572
GGGCAUCUGCUGUCACC	chr22:39709025-39709302(-)$1	277	256	273	10.0434

#DB
)))))))...)))).))	chr16:279049-279353(-)$1	1	258	275	11.1139
.))))))..)))))...	chr16:87377026-87377317(-)$1	1	267	284	9.0835
)))))))))))))...)	chr14:104145831-104146092(+)$1	1	231	248	8.9828
))))))))..)))))))	chr1:1019547-1019802(-)$1	1	213	230	10.7998
)))))))..))))))..	chr16:28847368-28847611(+)$1	1	206	223	10.9158
)))))))..)).)))))	chr20:48759844-48760142(-)$1	1	254	271	11.7500
.))))))...)))....	chr2:71577016-71577254(+)$1	1	219	236	8.3271
)))))).))....))))	chr9:97842981-97843250(+)$1	1	251	268	8.8707
)))))))...)))))..	chr3:38167813-38168084(-)$1	1	238	255	12.4037
))))))).....)))))	chr20:49508411-49508688(-)$1	1	234	251	9.5781
)))))))...)))).))	chr1:46073462-46073734(+)$1	1	228	245	11.5544
.)))))).))))..)))	chr19:40740778-40741039(-)$1	1	235	252	8.4283
))))))).))).)))).	chr1:1341005-1341257(-)$1	1	228	245	8.3460
))))))).)..))))))	chr19:1271398-1271635(+)$1	1	156	173	8.9603
))))))).))))).)).	chr1:36755036-36755288(+)$1	1	181	198	11.4660
))))))))).)))))))	chr1:193028837-193029097(+)$1	1	221	238	8.4628
))))))).)).))))).	chr9:139752458-139752721(+)$1	1	158	175	12.0074
))))))))))))))...	chr7:142962140-142962388(+)$1	1	175	192	7.5098
.))))))..))))....	chr22:31654325-31654604(+)$1	1	195	212	7.4804
)))).)...))))))))	chr22:20112884-20113126(+)$1	1	175	192	8.5214
)))))))..))))))))	chr21:37417701-37417951(-)$1	1	168	185	10.8699
))))))).).)))))..	chr17:79532338-79532603(-)$1	1	231	248	9.9342
))).)))...)))))))	chr7:73021517-73021726(-)$1	1	160	177	8.5043
(((((((((...(((((	chr1:43212733-43213023(-)$1	1	19	36	9.1155
.))))))..))))))))	chr7:137569556-137569801(-)$1	1	227	244	10.1458
)))))))))...)))))	chr9:74979409-74979681(-)$1	1	255	272	8.0916
))))))).)).)))((.	chr5:73931516-73931771(-)$1	1	216	233	7.9573
)))))))...)))))))	chr16:66864539-66864852(-)$1	1	222	239	8.9030
)))))))...))).)))	chr17:42953132-42953415(-)$1	1	259	276	9.7569
.)))))).))))))..)	chr7:150020569-150020829(+)$1	1	214	231	8.9749
)))))))...))).)))	chr8:6566346-6566593(+)$1	1	224	241	9.3672
.))))))..))))).))	chr21:45507700-45507977(+)$1	1	241	258	10.3973
)))))))....))))))	chr3:9965632-9965874(+)$1	1	134	151	11.2420
)))))))..).)).)))	chr16:88877768-88878041(-)$1	1	252	269	10.4990
.)))))).)))))....	chr1:11898639-11898887(+)$1	1	184	201	8.2160
))))))).)))..))))	chr4:76439214-76439465(-)$1	1	232	249	8.3490
)))))))...))))..)	chr6:35454069-35454358(-)$1	1	249	266	11.2557
)))))))..)))))).)	chr5:140021294-140021545(+)$1	1	210	227	10.6057
)))).)).).)))))..	chr21:45557104-45557358(+)$1	1	170	187	7.1210
)))))))...))))).)	chr1:78098328-78098595(-)$1	1	222	239	12.7180
))))))))).))))..)	chr17:17720834-17721085(-)$1	1	83	100	9.2572
)))))))....)))...	chr22:39709025-39709302(-)$1	1	256	273	10.0434

#PSSM
G : 0.33	H : 0.26	: : 0.14	F : 0.07	I : 0.04	c : 0.04	? : 0.02	} : 0.02	E : 0.02	C : 0.02	
F : 0.33	G : 0.33	H : 0.26	I : 0.04	E : 0.02	
G : 0.35	F : 0.30	H : 0.26	I : 0.04	E : 0.02	
G : 0.33	F : 0.30	H : 0.26	I : 0.04	} : 0.02	E : 0.02	
G : 0.33	F : 0.28	H : 0.26	I : 0.04	} : 0.04	C : 0.02	
G : 0.33	F : 0.28	H : 0.26	I : 0.04	A : 0.02	C : 0.02	B : 0.02	
G : 0.33	H : 0.26	F : 0.26	I : 0.04	} : 0.02	Z : 0.02	C : 0.02	B : 0.02	
Z : 0.26	} : 0.26	Y : 0.21	B : 0.09	H : 0.07	~ : 0.04	? : 0.02	G : 0.02	
Z : 0.26	Y : 0.23	B : 0.14	E : 0.07	A : 0.07	C : 0.04	F : 0.04	~ : 0.04	? : 0.02	D : 0.02	G : 0.02	
Z : 0.26	E : 0.14	F : 0.11	} : 0.09	B : 0.07	~ : 0.07	C : 0.07	Y : 0.04	D : 0.04	? : 0.02	: : 0.02	A : 0.02	
E : 0.26	D : 0.14	F : 0.14	C : 0.14	~ : 0.07	} : 0.07	H : 0.04	B : 0.02	? : 0.02	Y : 0.02	: : 0.02	Z : 0.02	
E : 0.28	F : 0.16	D : 0.14	C : 0.14	} : 0.04	H : 0.04	~ : 0.02	? : 0.02	J : 0.02	: : 0.02	Z : 0.02	B : 0.02	Y : 0.02	
E : 0.40	F : 0.16	D : 0.14	C : 0.11	Y : 0.04	H : 0.04	~ : 0.02	J : 0.02	B : 0.02	
E : 0.33	F : 0.19	D : 0.14	} : 0.09	: : 0.07	H : 0.04	C : 0.04	Z : 0.02	Y : 0.02	J : 0.02	
E : 0.26	F : 0.14	: : 0.11	} : 0.07	D : 0.07	Y : 0.07	Z : 0.04	B : 0.04	H : 0.04	C : 0.04	J : 0.02	b : 0.02	G : 0.02	
C : 0.16	: : 0.16	E : 0.14	Z : 0.07	D : 0.07	F : 0.07	Y : 0.07	B : 0.04	H : 0.04	} : 0.04	~ : 0.02	J : 0.02	b : 0.02	G : 0.02	
C : 0.16	E : 0.16	: : 0.16	D : 0.07	} : 0.07	B : 0.07	Z : 0.04	G : 0.04	H : 0.04	F : 0.04	~ : 0.02	J : 0.02	A : 0.02	! : 0.02	

#score	405.8893629827738
#seq	42
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_CDS_m2_run1.txt

#BEAR
ccc"""ccc"""bbcccqqqqqqqqccc22bb4444cc	chr22:20918734-20918988(+)$1	254	96	134	11.2883
eee!!ccc[ccc!!a[cccmmmmccc]a22ccc22ccc	chr14:75265125-75265390(+)$1	265	19	57	13.8393
:::ggggggg[a[bbcccnnnnnccc333bb]a]gggg	chr21:33974496-33974779(-)$1	283	12	50	11.4892
ddd[dddd####bb!!bbmmmmbb]bb333dddd333d	chr11:129992153-129992488(+)$1	335	194	232	11.4815
dddd[ccc[ccc!!bbddddllldddd333bb22ccc8	chr12:56572090-56572436(-)$1	346	203	241	11.6600
===========!!a[a[annnnna]a]a22========	chr21:34143631-34143920(-)$1	289	40	78	17.1215
iiiiiiiii[bb"""bbnnnnnbb333bb]iiiiiiii	chr20:57242955-57243269(+)$1	314	99	137	11.9791
[eeeee"""a"""bb[bbmmmmbb]bb333a333eeee	chr19:50099320-50099569(+)$1	249	97	135	12.7376
eee[a"""bb"""cccaooooooa]ccc22bba]eeee	chr7:6461254-6461493(-)$1	239	163	201	15.7325
ccc"""ggggggg"""cccmmmmccc333ggggggg22	chr1:39816356-39816653(+)$1	297	219	257	13.3555
==========%%%%%%ddddllldddd22=========	chr11:65822648-65822885(+)$1	237	192	230	11.5394
=====####ccc!!cccmmmmccc]ccc333=======	chr13:98668882-98669152(+)$1	270	54	92	13.8378
[bb[a[ddddeeeeecccooooooccc4444eeeee22	chr22:36684315-36684551(-)$1	236	72	110	12.4065
a!!hhhhhhhh"""ddddnnnnndddd333hhhhhhhh	chr7:1887153-1887406(-)$1	253	154	192	12.9170
ddd"""bb"""eeeee[bboooooobb333eeeee444	chr6:31857144-31857446(-)$1	302	61	99	12.0167
cc!!ggggggg!!eeeeennnnneeeee333ggggggg	chr12:80214462-80214729(-)$1	267	36	74	14.8157
gg####eeeeebba!!cccooooooccc22a]bb]eee	chr2:232577052-232577316(+)$1	264	177	215	13.0566
:eeeee[ccc!!eeeeeooooooeeeee22ccc22eee	chr7:155457781-155458045(+)$1	264	33	71	12.6698
cc[bb[dddd"""eeeeeooooooeeeeeddddbbccc	chr17:27009643-27009867(+)$1	224	162	200	11.8094
gggg[ffffff####ddddmmmmdddd4444ffffff2	chr8:98656633-98656897(+)$1	264	141	179	11.9576
e[a####ccc!!bb[bboooooobb]bb22ccc333a]	chr16:89350383-89350616(-)$1	233	102	140	15.1427
cceeeee[bb[ccc[cccnnnnnccc]ccc]bbeeeee	chr8:144998812-144999051(-)$1	239	78	116	11.3739
###bb!!ccc####ddddnnnnndddd4444ccc22bb	chr1:171509132-171509373(+)$1	241	38	76	15.3596
h!!bb####bb!!eeeeennnnneeeee22bb]bb22h	chr19:45899333-45899605(-)$1	272	139	177	13.1342
ffff[dddd[bb"""cccnnnnnccc333bb]dddd33	chr19:10262377-10262623(-)$1	246	103	141	12.9465
c"""ccc[dddd[bb[bboooooobb]bb]ddddccc]	chr1:39776511-39776770(+)$1	259	209	247	11.3419
gg$$$$$===========nnnnn===========22gg	chr5:65474543-65474846(+)$1	303	253	291	13.7716
!!ccceeeee"""ccc!!cccmmmmccc333ccc]eee	chr11:66366545-66366825(+)$1	280	145	183	11.5222
============####cccooooooccc22========	chr17:42286744-42287011(-)$1	267	37	75	16.3213
dd[bbeeeee"""a[ccclllccc]a]eeeee]bb]dd	chr12:124832724-124832960(-)$1	236	75	113	10.6464
!!ccc!!ccc"""a[ddddmmmmdddda333ccc]ccc	chr7:100483919-100484154(+)$1	235	142	180	15.2956
ccc!!eeeee####ddddoooooodddd22eeeeeccc	chr12:56559290-56559584(-)$1	294	245	283	14.8367
!ggggggg####dddd[bbnnnnnbb]ddddggggggg	chr5:177658691-177658945(-)$1	254	181	219	10.6405
eee!!ccc%%%%%%ddddnnnnndddd333ccc22eee	chrM:14159-14397(-)$1	238	182	220	12.6377
ddd"""bb####bbddddnnnnndddd]bb333bb444	chr8:37732083-37732375(-)$1	292	164	202	12.3695
a[ffffff[bb[a[cccooooooccc]a]bbffffff]	chr9:131023351-131023628(-)$1	277	148	186	11.7345
ggggg!!ccc!!cccooooooccc]ccc22ggggggg]	chr16:2161762-2162007(-)$1	245	159	197	13.2311
d[ccc[eeeee####cccmmmmccc4444eeeee]ccc	chr14:56106999-56107254(+)$1	255	193	231	12.2845
####bb"""eeeee[aooooooaeeeee333bb22ggg	chr19:10934426-10934674(+)$1	248	166	204	13.0356
a[eeeee[dddd[bb[cccooooooccc22bb]dddd]	chrM:14222-14446(-)$1	224	71	109	12.0534
!bb[ccc[bb"""ddddooooooddddbb]ccc]bb33	chr8:144407450-144407783(-)$1	333	90	128	13.4038
eeee####bbccc[eeeeemmmmeeeee22ccc]bb22	chrX:152957478-152957729(+)$1	251	138	176	10.9825
ddd####ccc!!bb[bboooooobb]bb22ccc22ddd	chr7:102065468-102065714(+)$1	246	111	149	13.7903
##eeeeeccc####bbcccmmmmccc]bb4444ccc]e	chr1:160208400-160208636(-)$1	236	96	134	12.3762
####bb!!gggggggooooooggggggg22bb333ccc	chr9:100777545-100777748(+)$1	203	75	113	11.6704
ggggggg[dddd[bb!!annnnna22bbdddd]ggggg	chr16:75675450-75675705(-)$1	255	13	51	10.8622
g[bb"""dddd####cccnnnnnccc333dddd]bbgg	chr7:152027604-152027862(-)$1	258	73	111	15.1363
g[bb"""dddd####cccnnnnnccc333dddd]bbgg	chr7:152027662-152027925(-)$1	263	136	174	15.1363
============[eeeeeooooooeeeee]========	chr8:38854436-38854722(+)$1	286	3	41	14.1804
iiiiiiiii####ggggggglllggggggg]iiiiiii	chr7:72891608-72891877(-)$1	269	20	58	12.4965
e"""ddddccc!!eeeeennnnneeeee333ccc333d	chr17:48823804-48824098(+)$1	294	4	42	14.6310
::dddd!!bb####ddddnnnnndddd4444bb22ddd	chr16:4881949-4882240(-)$1	291	72	110	12.4686

#otherMatches

#Seq PSSM
gcagcagcaacagcagcaguuccaggcucagcagagug	chr22:20918734-20918988(+)$1	254	96	134	11.2883
CCAGGAUUGGUCAAGCAAGAAGACUUUCGGGAUAAGAU	chr14:75265125-75265390(+)$1	265	19	57	13.8393
AAAGGCAAUCGUAAAACAUUUGUUGUAACUUCAGGAUU	chr21:33974496-33974779(-)$1	283	12	50	11.4892
CCUACUGAACCCGGCAGCGACGGCACCAUGUCAGACAA	chr11:129992153-129992488(+)$1	335	194	232	11.4815
ACCACAUCAUCAUUCCCAGCUACGCUGCCUGGUUUGAC	chr12:56572090-56572436(-)$1	346	203	241	11.6600
CCGCCGCCGGGCACGGGCGAAGAGGCGGGCCCCGGUGG	chr21:34143631-34143920(-)$1	289	40	78	17.1215
GUUGGCCGGAUUAAGCAGAAGAUGAAAGAAUUGGCCAG	chr20:57242955-57243269(+)$1	314	99	137	11.9791
CAGCCGGAGCAGGUGGCUACAAGGGCAAGGGGGAUGGC	chr19:50099320-50099569(+)$1	249	97	135	12.7376
CUGUGAAUGCUGACCACACAGAAGAUGGGUGCCUCGGG	chr7:6461254-6461493(-)$1	239	163	201	15.7325
GGAAAAGCUUCAUCAGGCUAAGGAGCAAUAUGAGGCGC	chr1:39816356-39816653(+)$1	297	219	257	13.3555
GGAGCCUUAGAGAAAGCUGGGUCCUAGAACUAAGGCUU	chr11:65822648-65822885(+)$1	237	192	230	11.5394
UAUACUUUUUAAUCCAUAUGAGUGUUUAUGUGUAUGUU	chr13:98668882-98669152(+)$1	270	54	92	13.8378
GUUGAUGUUCCUUCCCCCAGGUGCGGGAGAUGGAGGCA	chr22:36684315-36684551(-)$1	236	72	110	12.4065
GGGCUGAGAUCUCCAUGCUGUGUGCAUCCCGGUUUCAG	chr7:1887153-1887406(-)$1	253	154	192	12.9170
UCCCAGUCUGAAGUUGAAGCUCUAACUGAACAACUAAG	chr6:31857144-31857446(-)$1	302	61	99	12.0167
UGAACCAGAGAAAAAUGCAUCCCGUAUUGAAUCUCUGG	chr12:80214462-80214729(-)$1	267	36	74	14.8157
GGUUCUGGCUUGAGAAGAAGGGGGGUUUGGCAUCUGGG	chr2:232577052-232577316(+)$1	264	177	215	13.0566
GCAUUGUGUCUAUUUUAACUUAGUAAAACUGACUUCAA	chr7:155457781-155458045(+)$1	264	33	71	12.6698
CUACCAGCGGCACGAGACAGAGCAGUUUCCCGCGGAGC	chr17:27009643-27009867(+)$1	224	162	200	11.8094
CCGAGGAGGGCUCGGCCCGGCUGCGGGAAAUGCUCUCG	chr8:98656633-98656897(+)$1	264	141	179	11.9576
UGCUUUUGACGAAUAUUGUAACAAAAAUCAGUUUCUGG	chr16:89350383-89350616(-)$1	233	102	140	15.1427
CCUGGCCGCGGAGCAGGAGUUGAUCCGGCUGCGGGCCG	chr8:144998812-144999051(-)$1	239	78	116	11.3739
UUAGAGGCUCACCCAAAGGCAGACUUUAUCAGAGAAUC	chr1:171509132-171509373(+)$1	241	38	76	15.3596
GGAGGGAGAGCAGCCUGGAUGGACUGGGGGGCACCGGC	chr19:45899333-45899605(-)$1	272	139	177	13.1342
UGUCAGCAGCCUGAGUGUGGGAAAUGUAAAGCCUGCAA	chr19:10262377-10262623(-)$1	246	103	141	12.9465
AGAGUUCAUUGGAUGGCAAGAGUAUGGCACCUAAGAAA	chr1:39776511-39776770(+)$1	259	209	247	11.3419
AGAUAGGAUCUAACAGCUUUUCCAGUUGUUAGAUGACU	chr5:65474543-65474846(+)$1	303	253	291	13.7716
GCGGUACUCAAGGGCAUGGGCAGCGGCCAGUUGCGUGA	chr11:66366545-66366825(+)$1	280	145	183	11.5222
AGGGUCAGGGCUGGAUGGCUGCUUUGUUGGGGUCCUGA	chr17:42286744-42287011(-)$1	267	37	75	16.3213
ACCGAGUGCUUUGUGUGGUUUCCAGGUGGCAUGUCUGU	chr12:124832724-124832960(-)$1	236	75	113	10.6464
UGACUCCCCAAAGGACUUUGUCAGAAGCAACUGGUAGU	chr7:100483919-100484154(+)$1	235	142	180	15.2956
GGCUCCCAGCCUAUCCCCCCAACAGGGGCUGCUGGGCC	chr12:56559290-56559584(-)$1	294	245	283	14.8367
GGCUGAAAAUGCUUUCAGAAACAAUCCGAAGUUUCAGC	chr5:177658691-177658945(-)$1	254	181	219	10.6405
GUGGUUACUGGUUGAACAUUGUUUGUUGGUGUAUAUAU	chrM:14159-14397(-)$1	238	182	220	12.6377
GACCUUGUGAGAAGAUCUGAGAAAGAUACUGCAGCUGU	chr8:37732083-37732375(-)$1	292	164	202	12.3695
CGAGCUUGGCUGAACUGAGGAACCAGAUGGGUAAGCUG	chr9:131023351-131023628(-)$1	277	148	186	11.7345
CAUCUAAUGCCUUCGAGAACCUGACGCAGCAGGUGCCU	chr16:2161762-2162007(-)$1	245	159	197	13.2311
AGAAUUUCAAUUUGCGUAUUCUUAUUUUCAUUGAUAUU	chr14:56106999-56107254(+)$1	255	193	231	12.2845
GCAGCCAGGCCCAGAGCCCCCACCUGGGAGAGGAAGCA	chr19:10934426-10934674(+)$1	248	166	204	13.0356
AGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGG	chrM:14222-14446(-)$1	224	71	109	12.0534
AAGAGGCAGAAAAACUUCAGCAAGAGUUCGGCUACUGU	chr8:144407450-144407783(-)$1	333	90	128	13.4038
CUGUGCCAGGCACACCUGUGGCAACGGGAGGUGACCAG	chrX:152957478-152957729(+)$1	251	138	176	10.9825
CCUGGAACCUGGCUCGUGCUGUGACCAGAAGGGAAAGG	chr7:102065468-102065714(+)$1	246	111	149	13.7903
CAGGCCAAGUUUCUUCCUAACAGUGGUGAUUCUACUCU	chr1:160208400-160208636(-)$1	236	96	134	12.3762
AAAGUCAAUUUUUGUUACUGUACagaggaggaagaagg	chr9:100777545-100777748(+)$1	203	75	113	11.6704
AGUUGCUAGGGGCAGAACAUAGAGGACUCUUCAGGCAG	chr16:75675450-75675705(-)$1	255	13	51	10.8622
GCAGAAGUGGAUAACAGCAAACAGCUAAUUCCAACUCU	chr7:152027604-152027862(-)$1	258	73	111	15.1363
GCAGAAGUGGAUAACAGCAAACAGCUAAUUCCAACUCU	chr7:152027662-152027925(-)$1	263	136	174	15.1363
CGCGCGUGCUCGUCGGGCGCGCGUGCUCGUCGGGCGCG	chr8:38854436-38854722(+)$1	286	3	41	14.1804
AGGGUGGCUUUUUAUACCUUAACAGGGUGUUGGUCAUC	chr7:72891608-72891877(-)$1	269	20	58	12.4965
UUUUGCCUAGUCUUGUUAAUUAAUAGCAUCUACUCCAA	chr17:48823804-48824098(+)$1	294	4	42	14.6310
AGAAGUAGGCCAAACUCAGGUGAUGAGAAGCGCAAACU	chr16:4881949-4882240(-)$1	291	72	110	12.4686

#DB
(((...(((...(((((........)))..))....))	chr22:20918734-20918988(+)$1	1	96	134	11.2883
(((..(((.(((..(.(((....))).)..)))..)))	chr14:75265125-75265390(+)$1	1	19	57	13.8393
...(((((((.(.(((((.....)))...)).).))))	chr21:33974496-33974779(-)$1	1	12	50	11.4892
(((.((((....((..((....)).))...))))...)	chr11:129992153-129992488(+)$1	1	194	232	11.4815
((((.(((.(((..((((((...))))...))..))).	chr12:56572090-56572436(-)$1	1	203	241	11.6600
(((((((((((..(.(.(.....).).)..))))))))	chr21:34143631-34143920(-)$1	1	40	78	17.1215
(((((((((.((...((.....))...)).))))))))	chr20:57242955-57243269(+)$1	1	99	137	11.9791
.(((((...(...((.((....)).))...)...))))	chr19:50099320-50099569(+)$1	1	97	135	12.7376
(((.(...((...((((......).)))..))).))))	chr7:6461254-6461493(-)$1	1	163	201	15.7325
(((...(((((((...(((....)))...)))))))..	chr1:39816356-39816653(+)$1	1	219	257	13.3555
((((((((((......((((...))))..)))))))))	chr11:65822648-65822885(+)$1	1	192	230	11.5394
(((((....(((..(((....))).)))...)))))))	chr13:98668882-98669152(+)$1	1	54	92	13.8378
.((.(.((((((((((((......)))....)))))..	chr22:36684315-36684551(-)$1	1	72	110	12.4065
(..((((((((...((((.....))))...))))))))	chr7:1887153-1887406(-)$1	1	154	192	12.9170
(((...((...(((((.((......))...)))))...	chr6:31857144-31857446(-)$1	1	61	99	12.0167
((..(((((((..(((((.....)))))...)))))))	chr12:80214462-80214729(-)$1	1	36	74	14.8157
((....((((((((..(((......)))..).)).)))	chr2:232577052-232577316(+)$1	1	177	215	13.0566
.(((((.(((..(((((......)))))..)))..)))	chr7:155457781-155458045(+)$1	1	33	71	12.6698
((.((.((((...(((((......))))))))))))))	chr17:27009643-27009867(+)$1	1	162	200	11.8094
((((.((((((....((((....))))....)))))).	chr8:98656633-98656897(+)$1	1	141	179	11.9576
(.(....(((..((.((......)).))..)))...).	chr16:89350383-89350616(-)$1	1	102	140	15.1427
))(((((.((.(((.(((.....))).))).)))))))	chr8:144998812-144999051(-)$1	1	78	116	11.3739
...((..(((....((((.....))))....)))..))	chr1:171509132-171509373(+)$1	1	38	76	15.3596
(..((....((..(((((.....)))))..)).))..)	chr19:45899333-45899605(-)$1	1	139	177	13.1342
((((.((((.((...(((.....)))...)).))))..	chr19:10262377-10262623(-)$1	1	103	141	12.9465
(...(((.((((.((.((......)).)).))))))).	chr1:39776511-39776770(+)$1	1	209	247	11.3419
((.....(((((((((((.....)))))))))))..))	chr5:65474543-65474846(+)$1	1	253	291	13.7716
..((((((((...(((..(((....)))...))).)))	chr11:66366545-66366825(+)$1	1	145	183	11.5222
((((((((((((....(((......)))..))))))))	chr17:42286744-42287011(-)$1	1	37	75	16.3213
((.(((((((...(.(((...))).).))))).)).))	chr12:124832724-124832960(-)$1	1	75	113	10.6464
..(((..(((...(.((((....)))))...))).)))	chr7:100483919-100484154(+)$1	1	142	180	15.2956
(((..(((((....((((......))))..))))))))	chr12:56559290-56559584(-)$1	1	245	283	14.8367
.(((((((....((((.((.....)).)))))))))))	chr5:177658691-177658945(-)$1	1	181	219	10.6405
(((..(((......((((.....))))...)))..)))	chrM:14159-14397(-)$1	1	182	220	12.6377
(((...((....((((((.....)))).))...))...	chr8:37732083-37732375(-)$1	1	164	202	12.3695
(.((((((.((.(.(((......))).).)))))))).	chr9:131023351-131023628(-)$1	1	148	186	11.7345
(((((..(((..(((......))).)))..))))))).	chr16:2161762-2162007(-)$1	1	159	197	13.2311
(.(((.(((((....(((....)))....))))).)))	chr14:56106999-56107254(+)$1	1	193	231	12.2845
....((...(((((.(......))))))...))..)))	chr19:10934426-10934674(+)$1	1	166	204	13.0356
(.(((((.((((.((.(((......)))..)).)))).	chrM:14222-14446(-)$1	1	71	109	12.0534
.((.(((.((...((((......)))))).))).))..	chr8:144407450-144407783(-)$1	1	90	128	13.4038
((((....(((((.(((((....)))))..))).))..	chrX:152957478-152957729(+)$1	1	138	176	10.9825
(((....(((..((.((......)).))..)))..)))	chr7:102065468-102065714(+)$1	1	111	149	13.7903
..((((((((....(((((....))).))....))).)	chr1:160208400-160208636(-)$1	1	96	134	12.3762
....((..(((((((......)))))))..))...)))	chr9:100777545-100777748(+)$1	1	75	113	11.6704
(((((((.((((.((..(.....)..)))))).)))))	chr16:75675450-75675705(-)$1	1	13	51	10.8622
(.((...((((....(((.....)))...)))).))))	chr7:152027604-152027862(-)$1	1	73	111	15.1363
(.((...((((....(((.....)))...)))).))))	chr7:152027662-152027925(-)$1	1	136	174	15.1363
((((((((((((.(((((......))))).))))))))	chr8:38854436-38854722(+)$1	1	3	41	14.1804
(((((((((....(((((((...))))))).)))))))	chr7:72891608-72891877(-)$1	1	20	58	12.4965
(...(((((((..(((((.....)))))...)))...)	chr17:48823804-48824098(+)$1	1	4	42	14.6310
..((((..((....((((.....))))....))..)))	chr16:4881949-4882240(-)$1	1	72	110	12.4686

#PSSM
c : 0.13	d : 0.13	g : 0.13	e : 0.11	= : 0.09	# : 0.07	! : 0.07	: : 0.05	a : 0.05	i : 0.03	[ : 0.03	h : 0.01	f : 0.01	
c : 0.11	e : 0.11	d : 0.11	g : 0.11	[ : 0.11	= : 0.09	! : 0.07	# : 0.07	: : 0.03	i : 0.03	b : 0.03	" : 0.03	f : 0.01	
e : 0.17	c : 0.11	d : 0.11	= : 0.09	b : 0.07	# : 0.07	g : 0.07	! : 0.05	i : 0.03	[ : 0.03	f : 0.03	" : 0.03	: : 0.01	a : 0.01	$ : 0.01	
" : 0.11	e : 0.11	b : 0.11	g : 0.09	= : 0.09	# : 0.09	! : 0.07	[ : 0.07	c : 0.05	d : 0.03	i : 0.03	f : 0.03	h : 0.01	$ : 0.01	
" : 0.11	b : 0.11	g : 0.09	= : 0.09	e : 0.09	c : 0.09	# : 0.07	! : 0.05	d : 0.05	[ : 0.05	i : 0.03	a : 0.03	h : 0.01	$ : 0.01	f : 0.01	
e : 0.15	" : 0.13	# : 0.11	c : 0.09	g : 0.07	d : 0.07	= : 0.07	[ : 0.05	! : 0.05	i : 0.03	f : 0.03	b : 0.03	h : 0.01	$ : 0.01	
e : 0.15	c : 0.11	g : 0.09	d : 0.09	" : 0.09	# : 0.09	! : 0.09	= : 0.07	i : 0.03	b : 0.03	f : 0.03	h : 0.01	[ : 0.01	$ : 0.01	
c : 0.21	d : 0.13	= : 0.09	e : 0.09	[ : 0.09	g : 0.07	" : 0.05	# : 0.05	i : 0.03	b : 0.03	f : 0.03	! : 0.03	h : 0.01	
c : 0.17	d : 0.15	# : 0.09	= : 0.09	b : 0.09	e : 0.09	g : 0.07	[ : 0.05	" : 0.05	i : 0.03	h : 0.01	f : 0.01	% : 0.01	
c : 0.21	b : 0.13	d : 0.13	e : 0.11	= : 0.09	g : 0.07	# : 0.07	" : 0.03	[ : 0.03	a : 0.01	h : 0.01	f : 0.01	% : 0.01	
" : 0.17	# : 0.15	c : 0.09	d : 0.09	= : 0.07	b : 0.07	e : 0.07	! : 0.07	g : 0.05	[ : 0.03	% : 0.03	h : 0.01	f : 0.01	
# : 0.23	" : 0.17	! : 0.15	c : 0.09	b : 0.05	e : 0.05	d : 0.05	= : 0.05	g : 0.03	% : 0.03	a : 0.01	[ : 0.01	
" : 0.19	# : 0.19	! : 0.13	b : 0.11	[ : 0.09	e : 0.07	c : 0.05	g : 0.03	% : 0.03	= : 0.01	d : 0.01	a : 0.01	
b : 0.19	e : 0.17	# : 0.17	a : 0.07	" : 0.07	c : 0.07	! : 0.05	% : 0.03	d : 0.03	[ : 0.03	g : 0.03	= : 0.01	
e : 0.17	d : 0.15	b : 0.13	[ : 0.13	c : 0.11	# : 0.09	" : 0.05	! : 0.03	g : 0.03	a : 0.01	% : 0.01	= : 0.01	
c : 0.24	d : 0.19	e : 0.15	b : 0.09	[ : 0.07	! : 0.05	a : 0.03	o : 0.03	" : 0.01	% : 0.01	= : 0.01	# : 0.01	g : 0.01	
c : 0.32	d : 0.21	e : 0.13	b : 0.11	[ : 0.05	o : 0.05	! : 0.03	a : 0.01	= : 0.01	g : 0.01	
c : 0.26	d : 0.19	o : 0.17	e : 0.11	b : 0.09	a : 0.03	q : 0.01	n : 0.01	m : 0.01	= : 0.01	! : 0.01	g : 0.01	
n : 0.32	o : 0.26	c : 0.13	m : 0.07	d : 0.07	b : 0.03	q : 0.01	l : 0.01	e : 0.01	g : 0.01	
n : 0.34	o : 0.34	m : 0.19	d : 0.03	q : 0.01	c : 0.01	l : 0.01	g : 0.01	
n : 0.34	o : 0.34	m : 0.19	l : 0.07	q : 0.01	c : 0.01	
n : 0.34	o : 0.30	m : 0.19	l : 0.05	c : 0.05	q : 0.01	g : 0.01	
n : 0.32	o : 0.28	m : 0.13	c : 0.07	b : 0.05	l : 0.05	q : 0.01	a : 0.01	g : 0.01	
c : 0.24	d : 0.19	o : 0.17	e : 0.11	b : 0.09	a : 0.05	g : 0.03	q : 0.01	= : 0.01	m : 0.01	n : 0.01	
c : 0.21	d : 0.21	e : 0.15	] : 0.13	o : 0.07	b : 0.07	g : 0.03	q : 0.01	3 : 0.01	= : 0.01	m : 0.01	2 : 0.01	
c : 0.34	d : 0.21	e : 0.15	b : 0.09	a : 0.03	] : 0.03	g : 0.03	3 : 0.01	= : 0.01	4 : 0.01	2 : 0.01	
d : 0.21	c : 0.17	] : 0.15	e : 0.15	3 : 0.11	b : 0.11	g : 0.03	= : 0.01	4 : 0.01	
3 : 0.21	c : 0.17	e : 0.17	b : 0.13	4 : 0.09	a : 0.07	d : 0.03	g : 0.03	2 : 0.01	= : 0.01	] : 0.01	
3 : 0.32	2 : 0.30	b : 0.09	4 : 0.09	e : 0.05	d : 0.03	c : 0.01	= : 0.01	] : 0.01	g : 0.01	
2 : 0.28	3 : 0.23	4 : 0.09	d : 0.09	b : 0.07	] : 0.07	g : 0.03	= : 0.03	e : 0.03	c : 0.01	
b : 0.17	c : 0.13	d : 0.13	3 : 0.13	= : 0.09	4 : 0.09	e : 0.07	a : 0.03	g : 0.03	] : 0.03	i : 0.01	h : 0.01	
c : 0.21	b : 0.17	d : 0.11	= : 0.11	e : 0.09	g : 0.07	] : 0.05	i : 0.03	3 : 0.03	f : 0.03	h : 0.01	4 : 0.01	
c : 0.21	d : 0.11	= : 0.11	g : 0.07	e : 0.07	b : 0.07	] : 0.07	3 : 0.05	4 : 0.03	a : 0.03	i : 0.03	f : 0.03	2 : 0.01	h : 0.01	
2 : 0.13	] : 0.11	= : 0.11	g : 0.09	e : 0.09	b : 0.09	c : 0.09	d : 0.07	3 : 0.05	i : 0.03	f : 0.03	4 : 0.01	h : 0.01	
2 : 0.15	b : 0.15	g : 0.11	e : 0.11	= : 0.09	3 : 0.07	] : 0.07	c : 0.05	i : 0.03	f : 0.03	d : 0.03	4 : 0.01	h : 0.01	
c : 0.17	e : 0.15	g : 0.13	= : 0.09	d : 0.07	b : 0.07	4 : 0.05	3 : 0.05	2 : 0.05	i : 0.03	f : 0.03	h : 0.01	] : 0.01	
c : 0.17	g : 0.17	e : 0.13	= : 0.09	3 : 0.07	2 : 0.07	d : 0.07	i : 0.03	4 : 0.03	f : 0.03	h : 0.01	a : 0.01	b : 0.01	] : 0.01	
g : 0.15	e : 0.15	c : 0.13	d : 0.09	= : 0.09	] : 0.09	2 : 0.07	i : 0.03	h : 0.03	4 : 0.03	3 : 0.03	8 : 0.01	b : 0.01	

#score	674.5272595251788
#seq	52
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_transcript_m1_run2.txt

#BEAR
c[eeeee[gggggggammmma]ggggggg]eeeee]c	chr6:16266094-16266342(+)$1	248	150	187	13.3038
cc[eeeee[ccceeeeellleeeee]ccceeeee]cc	chr19:3980517-3980776(-)$1	259	178	215	10.9045
ggg[ccc[a[cccacccmmmmccc]a333ccc]a]cc	chr12:7076402-7076631(-)$1	229	82	119	13.6228
ccc=================22ccc]dddd]ffffff	chr13:92003172-92003413(+)$1	241	187	224	11.6265
eeee[bb"""bb[ccclllcccbb333bbeeeee]ee	chr14:103804135-103804413(+)$1	278	225	262	11.0952
ccc[eeeee"""a[cccmmmmccc]a]eeeee22ccc	chr15:44085158-44085450(+)$1	292	9	46	11.5664
gg$$$$$iiiiiiiiimmmmiiiiiiiii333ggggg	chrX:73071591-73071873(-)$1	282	104	141	14.8913
dddd===========rrrrrrrrr===========::	chr19:17973387-17973620(+)$1	233	85	122	11.6469
gggg[ccc!!a!!ccclllccc22a22cccggggggg	chr19:3053642-3053907(-)$1	265	162	199	13.3549
dddd"""eeeee[cccmmmmccc4444eeeeedddd]	chr11:5290778-5291008(-)$1	230	169	206	11.2442
===========[a[annnnna]a]===========::	chr1:173834402-173834691(-)$1	289	17	54	14.0444
%ccc[iiiiiiiiibblllbb]iiiiiiiiiccc666	chr2:207026852-207027184(+)$1	332	112	149	11.8182
ggggggggggggg[cccnnnnnccc22gggggggFFF	chrX:135961284-135961534(-)$1	250	79	116	11.5336
eeee!!==========mmmm==========22eeeee	chr5:140098444-140098657(+)$1	213	167	204	15.7108
!!ffffff[gggggggmmmmggggggg4444ffffff	chr6:16266312-16266580(+)$1	268	184	221	12.8771
da[ggggggg!!ddddoooooodddd]ggggggg]a:	chr19:49994402-49994613(+)$1	211	110	147	12.2505
ggggggg[bb!!ddddnnnnndddd]bb]ggggggg4	chr3:186504525-186504741(+)$1	216	128	165	11.7620
gggggg==========oooooo==========333gg	chr10:101996838-101997095(-)$1	257	207	244	16.8508
d$$$$$==========mmmm==========]dddd55	chr5:170814890-170815110(+)$1	220	106	143	13.5077
!bb[============mmmm============]bb22	chrX:118921214-118921467(-)$1	253	98	135	15.9447
gggg!!==========mmmm==========]gggggg	chr4:53578767-53579013(+)$1	246	95	132	17.4990
=========####cccnnnnnccc==========ccc	chr10:129913693-129914010(-)$1	317	168	205	15.4711
gggggggiiiiiiiiimmmmiiiiiiiii333ggggg	chr5:137896629-137896886(-)$1	257	189	226	16.1238
ccc"""iiiiiiiiinnnnniiiiiiiii333ccc]b	chr1:150530643-150530903(+)$1	260	219	256	14.4010
===!!ccc"""eeeeemmmmeeeee4444ccc]====	chr7:98479293-98479527(+)$1	234	75	112	14.2735
===!!ccc"""eeeeemmmmeeeee4444ccc]====	chr7:98479352-98479571(+)$1	219	16	53	14.2735
ddddggggggg[ddddmmmmddddgggggggddddcc	chr11:125937749-125938007(+)$1	258	172	209	11.5134
!!ffffff[gggggggmmmmggggggg4444ffffff	chr6:16266408-16266655(+)$1	247	88	125	12.8771
fff[dddd"""ddddoooooodddd22ddddffffff	chr2:234184484-234184730(+)$1	246	37	74	10.6033
ee"""a[bb[eeeeennnnneeeee4444bb]a333e	chr17:2233476-2233745(-)$1	269	119	156	10.8518
ggggggiiiiiiiiinnnnniiiiiiiii22gggggg	chr6:86386949-86387169(-)$1	220	22	59	14.6215
$=========="""bbmmmmbb22==========22d	chr12:49048148-49048401(-)$1	253	182	219	14.2421
::iiiiiiiii[ddddmmmmdddd333iiiiiiiiiD	chr10:101996703-101996936(-)$1	233	136	173	12.0829
eee[ccc[a!!eeeeemmmmeeeee22accceeeee2	chr11:62622003-62622237(-)$1	234	140	177	12.1851
fffffa[bb"""ddddmmmmdddd333bb]a]fffff	chrX:135961255-135961484(-)$1	229	180	217	11.7236
c[a[ggggggg[cccooooooccc]ggggggg]a]cc	chr6:133138306-133138559(+)$1	253	129	166	14.5863
c[eeeee[gggggggammmma]ggggggg]eeeee]c	chr6:16266156-16266387(+)$1	231	88	125	13.3038
"bb[ccc[ccc[ccclllccc]ccc]cccbb333iii	chr17:79801302-79801592(-)$1	290	234	271	11.0812
dddd============mmmm============22ddd	chr22:50011508-50011768(-)$1	260	108	145	15.5056
ggggg"""eeeee[bbmmmmbbeeeeeggggggg]bb	chr7:22896157-22896408(+)$1	251	95	132	11.5142
ffffff[dddd!!cccmmmmccc333dddd]ffffff	chr10:79800301-79800545(+)$1	244	20	57	11.5108
f!!===========[bbnnnnnbb]===========7	chr18:75690931-75691155(-)$1	224	73	110	13.3834
===!!ccc"""eeeeemmmmeeeee4444ccc]====	chr7:98479329-98479533(+)$1	204	39	76	14.2735
=======!!cccssssssssssccc22==========	chr14:56083134-56083445(+)$1	311	80	117	10.4743
gggggg####fffffflllffffff4444ggggggg:	chr15:89878240-89878479(+)$1	239	138	175	11.5246
a[ffffff[ccc[cccooooooccccccffffff]a2	chr11:5478200-5478498(-)$1	298	232	269	11.7009
##iiiiiiiii!!cccooooooccc]iiiiiiiii55	chr18:75689905-75690152(-)$1	247	45	82	14.0648
3gggggggiiiiiiiiillliiiiiiiiieeeeeooo	chr1:76255085-76255320(+)$1	235	141	178	13.4050
ccc!!================!!ccca[bb[gggggg	chr1:8925415-8925642(-)$1	227	88	125	12.3770
e[ccc"""ggggggglllggggggg22ccc]eeeeee	chr7:6731542-6731794(-)$1	252	126	163	11.5666
fff!!==========nnnnn==========22fffff	chr19:10406675-10406960(+)$1	285	236	273	15.1520
dddd==========oooooo=================	chr8:33370926-33371150(+)$1	224	50	87	16.1714
ccc[gggggggccc[ammmma]ccc22ggggggg]cc	chr11:62622662-62622937(-)$1	275	84	121	14.8382
ggg[ccc[a[cccacccmmmmccc]a333ccc]a]cc	chr12:7076447-7076658(-)$1	211	109	146	13.6228
ggggggg####cccooooooccc4444ggggggg]==	chr10:70514848-70515083(+)$1	235	41	78	14.6657
b"""eeeeeeeeeeooooooeeeee333eeeee4444	chr17:38556415-38556673(-)$1	258	153	190	11.2605
"gggggggaddddcccmmmmccc]dddd]a]gggggg	chr20:26189852-26190092(-)$1	240	57	94	12.4804
!!eeeeeiiiiiiiiinnnnniiiiiiiii333eeee	chr11:75115434-75115675(+)$1	241	80	117	13.7650

#otherMatches

#Seq PSSM
ucuguggcuucacugcugaagucagugagaccacgaa	chr6:16266094-16266342(+)$1	248	150	187	13.3038
GGUCUCCACUGGCCUGAAGGUCAGGAUCAUGGGGCCC	chr19:3980517-3980776(-)$1	259	178	215	10.9045
CCACGGUAGGGCUGGGCACAAGCCACCUGAGCGCAAC	chr12:7076402-7076631(-)$1	229	82	119	13.6228
CUACUGCAUUAUGAGCACUUAAAGUACUGCUAGCUGU	chr13:92003172-92003413(+)$1	241	187	224	11.6265
GGGAUGACAGGGAUCCUUAGGGCCACCUCUCCCUAGU	chr14:103804135-103804413(+)$1	278	225	262	11.0952
CUUAGGCGGUAACCAGCGUGAGCUCGCCCGCCAGAAG	chr15:44085158-44085450(+)$1	292	9	46	11.5664
UUUUUUUUGCUGCUGAUCAUUUGGUGGUGUGUGAGUG	chrX:73071591-73071873(-)$1	282	104	141	14.8913
UCGCCUUUGGGGGGCUGUGGCCGUGCCCCUCAAAGUG	chr19:17973387-17973620(+)$1	233	85	122	11.6469
UAGCACAAGACACAGCGGAGCUCGGGAUUGGCUAAAC	chr19:3053642-3053907(-)$1	265	162	199	13.3549
GCCAUCCUGGGCAACCCCAAGGUCAAGGCCCAUGGCA	chr11:5290778-5291008(-)$1	230	169	206	11.2442
GUUUUUAUCCAUGGAUGACUUGCUUGGGUAAGGACAU	chr1:173834402-173834691(-)$1	289	17	54	14.0444
GGUCUGCAGCUGUUCUUAUGGUAGCAGUUGUGGCAUU	chr2:207026852-207027184(+)$1	332	112	149	11.8182
CUGGGCUAUUAUAAUUAAAAUAUAAGCUAUGAUGAAU	chrX:135961284-135961534(-)$1	250	79	116	11.5336
AGCUCCUUUUCCAUGGGGAAccauggagaaauggcug	chr5:140098444-140098657(+)$1	213	167	204	15.7108
aaggucugaggcuucauuccugaagucaguguagacc	chr6:16266312-16266580(+)$1	268	184	221	12.8771
AGGAGGCUUGGGUGGGUGCUUUUCUAACAGGCCUGCA	chr19:49994402-49994613(+)$1	211	110	147	12.2505
CAGAAUGAAGUUAAUUUUUAUAAUUUCUACGUUUUGA	chr3:186504525-186504741(+)$1	216	128	165	11.7620
UCCUUACAGACAGGCUGACACAGGCUUGUCUGGCCUG	chr10:101996838-101997095(-)$1	257	207	244	16.8508
GAACUAUCUUUUCGGUAACUGCUGGGGGGAGCUGGAG	chr5:170814890-170815110(+)$1	220	106	143	13.5077
UUUUUGAUUUUGCCUUUAUGAGGGUAAAAUCAUGACA	chrX:118921214-118921467(-)$1	253	98	135	15.9447
gcccggggggcgggcggcggugcccgucccggggcUG	chr4:53578767-53579013(+)$1	246	95	132	17.4990
CUGAUGGUUUACAGGGGGAGACCCAACUGUUGGUCUC	chr10:129913693-129914010(-)$1	317	168	205	15.4711
AAAUAGGAUUAUCUUGGACCUAAGAUAGUGACCUUGU	chr5:137896629-137896886(-)$1	257	189	226	16.1238
CAGAGCCUGGUUCUGAAGCCUAGAGCUGGAAGCUGGC	chr1:150530643-150530903(+)$1	260	219	256	14.4010
uguguuuguguguguguguauaugCUUGUCAGUGCAU	chr7:98479293-98479527(+)$1	234	75	112	14.2735
uguguuuguguguguguguauaugCUUGUCAGUGCAU	chr7:98479352-98479571(+)$1	219	16	53	14.2735
UUUUGGUUAACUGUUUCUAAGAAUGUUGACUUGUUCA	chr11:125937749-125938007(+)$1	258	172	209	11.5134
aaggucugaggcuucauuccugaagucaguguagacc	chr6:16266408-16266655(+)$1	247	88	125	12.8771
AGUGUGUGUUUCUGAGAGUGAUCGGCUCACAGCUGAC	chr2:234184484-234184730(+)$1	246	37	74	10.6033
CCUGUCUGAAGCAUCUCAGUGAUGCAAUCUCUGUGUG	chr17:2233476-2233745(-)$1	269	119	156	10.8518
AUUUCUGUAAGUGGAGUUUUUCUGUUUGCUUAGAGAU	chr6:86386949-86387169(-)$1	220	22	59	14.6215
UUGGCUGUUCUGGGACCUCAGUAGGGAAUGGCUAUUU	chr12:49048148-49048401(-)$1	253	182	219	14.2421
CUUCUCAGAGACUGUGCAGGCACAACUUCUCUGGGAC	chr10:101996703-101996936(-)$1	233	136	173	12.0829
UGGCAGUUGUUGUUUAUGAAUAAGCUUCAUUCCAUCC	chr11:62622003-62622237(-)$1	234	140	177	12.1851
UUUUCUGAAAACUACUUUUUAGUACUCUUGAUGAAAG	chrX:135961255-135961484(-)$1	229	180	217	11.7236
ACGAGCCUUAAGGACAUUGAAGUCGUUAAGGUCCCUG	chr6:133138306-133138559(+)$1	253	129	166	14.5863
ucuguggcuucacugcugaagucagugagaccacgaa	chr6:16266156-16266387(+)$1	231	88	125	13.3038
UGGAGACUUCCGGAUCCUGUCAGGGUGUCCCCCAUGC	chr17:79801302-79801592(-)$1	290	234	271	11.0812
GGCUUCCUGCAGUGGUGGGGGCUGCUGUGGGGAUGGC	chr22:50011508-50011768(-)$1	260	108	145	15.5056
AUCUGAUUUUAUGUGCUUCUGCUGUGAUGGAUUAAAG	chr7:22896157-22896408(+)$1	251	95	132	11.5142
AAAGAAUUUUAAAGGCAGUUGUUGACUAAACUUCUUU	chr10:79800301-79800545(+)$1	244	20	57	11.5108
CAUCAGUAAUUUAAGUUAUAGAAAGUUAAGUUGUUGU	chr18:75690931-75691155(-)$1	224	73	110	13.3834
uguguuuguguguguguguauaugCUUGUCAGUGCAU	chr7:98479329-98479533(+)$1	204	39	76	14.2735
UUUGUUUGUGUUUAAUAAAGAUGACCAGGAUAAAAAG	chr14:56083134-56083445(+)$1	311	80	117	10.4743
GGGAGGUUAUGAUUAACUUUUAGUUUAUUCCUCCCUC	chr15:89878240-89878479(+)$1	239	138	175	11.5246
cgggaagcaugaugcuggcauaggcucggcuucuggg	chr11:5478200-5478498(-)$1	298	232	269	11.7009
aguagggagggcaggaauggagucCCCCCUUCUUGGG	chr18:75689905-75690152(-)$1	247	45	82	14.0648
AGACCUUGGAGGGUAAAAUUUUUAUCUUCAGUAUGUG	chr1:76255085-76255320(+)$1	235	141	178	13.4050
CAUCUCUUCCCAGGCCUGGAGCUGCUGAAGACUGCUA	chr1:8925415-8925642(-)$1	227	88	125	12.3770
GUGGGAAAUCCUUCUGCCAGAAGGGAACCCUUACUGU	chr7:6731542-6731794(-)$1	252	126	163	11.5666
CCCCGGGGCAUGAGGACUGACUUCGUGCCUGUGGGAG	chr19:10406675-10406960(+)$1	285	236	273	15.1520
UGUCAACUAUAAGAUgauccuuuuguaguucaugagc	chr8:33370926-33371150(+)$1	224	50	87	16.1714
AGUGUGUGGAAGUUGCUACGGGGAUGAUUUUACGAAC	chr11:62622662-62622937(-)$1	275	84	121	14.8382
CCACGGUAGGGCUGGGCACAAGCCACCUGAGCGCAAC	chr12:7076447-7076658(-)$1	211	109	146	13.6228
UUUAAAAGAACUCUAUCUGAAGAAAUAUUUUAAAAGG	chr10:70514848-70515083(+)$1	235	41	78	14.6657
GAGAGAGUUGGACUACACAAAGUCUUCAAACUCCAAA	chr17:38556415-38556673(-)$1	258	153	190	11.2605
GUCCGCGCGUGGGUCCUGAGGGAGCUCGUCGGUGUGG	chr20:26189852-26190092(-)$1	240	57	94	12.4804
UCCUUGUCAGUGCCAUGUUCUGUGGUGCUGUGCACGA	chr11:75115434-75115675(+)$1	241	80	117	13.7650

#DB
(.(((((.((((((((....).))))))).))))).)	chr6:16266094-16266342(+)$1	1	150	187	13.3038
((.(((((.((((((((...))))).)))))))).))	chr19:3980517-3980776(-)$1	1	178	215	10.9045
(((.(((.(.(((((((....))).)...))).).))	chr12:7076402-7076631(-)$1	1	82	119	13.6228
))))))))))))))))))))..))).)))).))))))	chr13:92003172-92003413(+)$1	1	187	224	11.6265
((((.((...((.(((...)))))...))))))).))	chr14:103804135-103804413(+)$1	1	225	262	11.0952
(((.(((((...(.(((....))).).)))))..)))	chr15:44085158-44085450(+)$1	1	9	46	11.5664
((.....(((((((((....)))))))))...)))))	chrX:73071591-73071873(-)$1	1	104	141	14.8913
))))(((((((((((.........)))))))))))..	chr19:17973387-17973620(+)$1	1	85	122	11.6469
((((.(((..(..(((...)))..)..))))))))))	chr19:3053642-3053907(-)$1	1	162	199	13.3549
((((...(((((.(((....)))....))))))))).	chr11:5290778-5291008(-)$1	1	169	206	11.2442
(((((((((((.(.(.....).).)))))))))))..	chr1:173834402-173834691(-)$1	1	17	54	14.0444
.(((.(((((((((((...)).))))))))))))...	chr2:207026852-207027184(+)$1	1	112	149	11.8182
))))))(((((((.(((.....)))..))))))))))	chrX:135961284-135961534(-)$1	1	79	116	11.5336
((((..((((((((((....))))))))))..)))))	chr5:140098444-140098657(+)$1	1	167	204	15.7108
..((((((.(((((((....)))))))....))))))	chr6:16266312-16266580(+)$1	1	184	221	12.8771
)(.(((((((..((((......)))).))))))).).	chr19:49994402-49994613(+)$1	1	110	147	12.2505
(((((((.((..((((.....)))).)).))))))).	chr3:186504525-186504741(+)$1	1	128	165	11.7620
((((((((((((((((......))))))))))...))	chr10:101996838-101997095(-)$1	1	207	244	16.8508
(.....((((((((((....)))))))))).))))..	chr5:170814890-170815110(+)$1	1	106	143	13.5077
.((.((((((((((((....)))))))))))).))..	chrX:118921214-118921467(-)$1	1	98	135	15.9447
((((..((((((((((....)))))))))).))))))	chr4:53578767-53579013(+)$1	1	95	132	17.4990
(((((((((....(((.....))))))))))))))))	chr10:129913693-129914010(-)$1	1	168	205	15.4711
((((((((((((((((....)))))))))...)))))	chr5:137896629-137896886(-)$1	1	189	226	16.1238
(((...(((((((((.....)))))))))...))).)	chr1:150530643-150530903(+)$1	1	219	256	14.4010
(((..(((...(((((....)))))....))).))))	chr7:98479293-98479527(+)$1	1	75	112	14.2735
(((..(((...(((((....)))))....))).))))	chr7:98479352-98479571(+)$1	1	16	53	14.2735
))))(((((((.((((....)))))))))))((((((	chr11:125937749-125938007(+)$1	1	172	209	11.5134
..((((((.(((((((....)))))))....))))))	chr6:16266408-16266655(+)$1	1	88	125	12.8771
(((.((((...((((......))))..))))))))))	chr2:234184484-234184730(+)$1	1	37	74	10.6033
((...(.((.(((((.....)))))....)).)...)	chr17:2233476-2233745(-)$1	1	119	156	10.8518
(((((((((((((((.....)))))))))..))))))	chr6:86386949-86387169(-)$1	1	22	59	14.6215
.((((((((((...((....))..))))))))))..)	chr12:49048148-49048401(-)$1	1	182	219	14.2421
..(((((((((.((((....))))...))))))))))	chr10:101996703-101996936(-)$1	1	136	173	12.0829
(((.(((.(..(((((....)))))..))))))))).	chr11:62622003-62622237(-)$1	1	140	177	12.1851
((((((.((...((((....))))...)).).)))))	chrX:135961255-135961484(-)$1	1	180	217	11.7236
(.(.(((((((.(((......))).))))))).).))	chr6:133138306-133138559(+)$1	1	129	166	14.5863
(.(((((.((((((((....).))))))).))))).)	chr6:16266156-16266387(+)$1	1	88	125	13.3038
.((.(((.(((.(((...))).))).)))))...)))	chr17:79801302-79801592(-)$1	1	234	271	11.0812
((((((((((((((((....))))))))))))..)))	chr22:50011508-50011768(-)$1	1	108	145	15.5056
(((((...(((((.((....)))))))))))))).))	chr7:22896157-22896408(+)$1	1	95	132	11.5142
((((((.((((..(((....)))...)))).))))))	chr10:79800301-79800545(+)$1	1	20	57	11.5108
(..(((((((((((.((.....)).))))))))))).	chr18:75690931-75691155(-)$1	1	73	110	13.3834
(((..(((...(((((....)))))....))).))))	chr7:98479329-98479533(+)$1	1	39	76	14.2735
(((((((..(((..........)))..))))))))))	chr14:56083134-56083445(+)$1	1	80	117	10.4743
((((((....((((((...))))))....))))))).	chr15:89878240-89878479(+)$1	1	138	175	11.5246
(.((((((.(((.(((......)))))))))))).).	chr11:5478200-5478498(-)$1	1	232	269	11.7009
..(((((((((..(((......))).)))))))))..	chr18:75689905-75690152(-)$1	1	45	82	14.0648
.)))))))(((((((((...)))))))))(((((...	chr1:76255085-76255320(+)$1	1	141	178	13.4050
(((..((((((((((((((((..((((.((.((((((	chr1:8925415-8925642(-)$1	1	88	125	12.3770
(.(((...(((((((...)))))))..))).))))))	chr7:6731542-6731794(-)$1	1	126	163	11.5666
(((..((((((((((.....))))))))))..)))))	chr19:10406675-10406960(+)$1	1	236	273	15.1520
))))((((((((((......))))))))))(((((((	chr8:33370926-33371150(+)$1	1	50	87	16.1714
(((.((((((((((.(....).)))..))))))).))	chr11:62622662-62622937(-)$1	1	84	121	14.8382
(((.(((.(.(((((((....))).)...))).).))	chr12:7076447-7076658(-)$1	1	109	146	13.6228
(((((((....(((......)))....))))))).))	chr10:70514848-70515083(+)$1	1	41	78	14.6657
(...((((((((((......)))))...)))))....	chr17:38556415-38556673(-)$1	1	153	190	11.2605
.(((((((((((((((....))).)))).).))))))	chr20:26189852-26190092(-)$1	1	57	94	12.4804
..((((((((((((((.....)))))))))...))))	chr11:75115434-75115675(+)$1	1	80	117	13.7650

#PSSM
g : 0.22	c : 0.15	d : 0.12	= : 0.10	e : 0.08	f : 0.08	! : 0.06	" : 0.03	% : 0.01	$ : 0.01	: : 0.01	a : 0.01	# : 0.01	3 : 0.01	b : 0.01	
g : 0.25	c : 0.12	= : 0.12	[ : 0.08	d : 0.08	e : 0.06	! : 0.06	f : 0.06	b : 0.03	a : 0.01	$ : 0.01	: : 0.01	# : 0.01	" : 0.01	
g : 0.24	c : 0.12	= : 0.12	f : 0.12	e : 0.10	d : 0.08	[ : 0.03	$ : 0.03	b : 0.03	" : 0.03	i : 0.03	a : 0.01	! : 0.01	
g : 0.22	[ : 0.15	e : 0.10	= : 0.10	d : 0.08	f : 0.08	! : 0.08	" : 0.05	$ : 0.03	c : 0.03	i : 0.03	
g : 0.24	= : 0.17	! : 0.12	e : 0.10	c : 0.08	f : 0.08	[ : 0.05	" : 0.05	$ : 0.03	i : 0.03	d : 0.01	
g : 0.22	= : 0.20	c : 0.13	e : 0.10	" : 0.06	f : 0.06	i : 0.05	$ : 0.03	! : 0.03	a : 0.03	b : 0.01	d : 0.01	
= : 0.27	g : 0.17	c : 0.13	e : 0.10	i : 0.08	" : 0.05	f : 0.05	[ : 0.05	b : 0.01	$ : 0.01	d : 0.01	# : 0.01	
= : 0.25	i : 0.13	[ : 0.12	g : 0.12	e : 0.06	c : 0.06	" : 0.05	f : 0.05	d : 0.03	b : 0.03	# : 0.03	! : 0.01	
= : 0.25	i : 0.15	g : 0.13	" : 0.08	[ : 0.06	a : 0.06	e : 0.06	b : 0.05	! : 0.03	# : 0.03	c : 0.01	d : 0.01	
= : 0.24	g : 0.17	i : 0.15	" : 0.12	c : 0.06	[ : 0.05	e : 0.05	# : 0.05	! : 0.03	d : 0.03	b : 0.01	
= : 0.24	g : 0.15	i : 0.15	c : 0.10	" : 0.10	e : 0.06	! : 0.05	# : 0.03	d : 0.03	b : 0.01	a : 0.01	f : 0.01	
= : 0.20	e : 0.13	c : 0.12	i : 0.12	g : 0.10	! : 0.08	[ : 0.08	" : 0.05	d : 0.03	b : 0.01	# : 0.01	f : 0.01	
= : 0.20	e : 0.13	i : 0.12	d : 0.12	g : 0.10	c : 0.10	[ : 0.05	! : 0.05	a : 0.03	# : 0.01	" : 0.01	s : 0.01	f : 0.01	
= : 0.20	c : 0.20	e : 0.12	i : 0.12	d : 0.10	g : 0.08	[ : 0.06	a : 0.03	" : 0.01	s : 0.01	f : 0.01	
c : 0.24	= : 0.17	e : 0.10	i : 0.10	d : 0.10	g : 0.08	b : 0.05	o : 0.05	[ : 0.03	a : 0.01	s : 0.01	f : 0.01	
c : 0.20	= : 0.13	e : 0.08	n : 0.08	d : 0.08	o : 0.08	i : 0.06	b : 0.06	a : 0.05	g : 0.03	l : 0.03	r : 0.01	s : 0.01	f : 0.01	
m : 0.41	o : 0.15	n : 0.13	l : 0.10	c : 0.06	= : 0.03	e : 0.01	r : 0.01	b : 0.01	s : 0.01	i : 0.01	
m : 0.46	n : 0.17	o : 0.15	l : 0.13	= : 0.03	r : 0.01	s : 0.01	
m : 0.46	n : 0.17	o : 0.15	l : 0.10	= : 0.03	r : 0.01	c : 0.01	s : 0.01	g : 0.01	
m : 0.46	n : 0.17	o : 0.15	c : 0.05	l : 0.03	= : 0.03	r : 0.01	b : 0.01	s : 0.01	f : 0.01	g : 0.01	
= : 0.13	e : 0.12	c : 0.12	o : 0.10	i : 0.08	n : 0.08	a : 0.06	m : 0.05	b : 0.05	g : 0.05	d : 0.05	2 : 0.01	r : 0.01	s : 0.01	f : 0.01	
c : 0.18	e : 0.12	= : 0.12	] : 0.10	i : 0.10	d : 0.08	o : 0.06	g : 0.05	n : 0.03	b : 0.03	2 : 0.01	r : 0.01	s : 0.01	f : 0.01	! : 0.01	
c : 0.27	e : 0.13	= : 0.13	i : 0.12	d : 0.10	g : 0.08	b : 0.03	2 : 0.03	r : 0.01	a : 0.01	f : 0.01	! : 0.01	
c : 0.22	e : 0.13	= : 0.13	i : 0.12	d : 0.10	g : 0.08	b : 0.03	2 : 0.03	4 : 0.03	] : 0.03	r : 0.01	3 : 0.01	f : 0.01	
= : 0.20	e : 0.13	c : 0.13	i : 0.12	g : 0.10	] : 0.08	3 : 0.06	d : 0.06	4 : 0.03	a : 0.01	f : 0.01	
= : 0.22	i : 0.12	2 : 0.12	4 : 0.12	g : 0.10	] : 0.08	3 : 0.08	a : 0.05	d : 0.03	c : 0.03	e : 0.01	
= : 0.22	i : 0.13	2 : 0.12	4 : 0.12	g : 0.10	3 : 0.10	c : 0.05	d : 0.05	] : 0.03	b : 0.01	e : 0.01	a : 0.01	
= : 0.24	g : 0.15	i : 0.15	4 : 0.12	c : 0.08	d : 0.06	3 : 0.05	b : 0.05	e : 0.03	a : 0.01	[ : 0.01	
= : 0.24	g : 0.15	i : 0.15	4 : 0.12	c : 0.08	d : 0.05	b : 0.05	e : 0.05	3 : 0.03	] : 0.03	f : 0.01	
= : 0.24	g : 0.15	c : 0.13	e : 0.10	i : 0.06	] : 0.05	d : 0.05	3 : 0.05	b : 0.05	4 : 0.03	2 : 0.01	f : 0.01	a : 0.01	
= : 0.17	g : 0.17	e : 0.13	c : 0.10	] : 0.10	3 : 0.06	i : 0.05	2 : 0.05	4 : 0.03	b : 0.03	d : 0.01	a : 0.01	f : 0.01	[ : 0.01	
g : 0.22	e : 0.17	= : 0.17	c : 0.10	f : 0.10	3 : 0.08	2 : 0.03	d : 0.03	] : 0.03	i : 0.03	
g : 0.24	e : 0.15	f : 0.13	] : 0.12	= : 0.12	d : 0.05	3 : 0.05	2 : 0.03	c : 0.03	i : 0.03	a : 0.01	
g : 0.24	= : 0.17	e : 0.15	f : 0.13	a : 0.05	d : 0.05	3 : 0.05	2 : 0.03	c : 0.03	i : 0.03	b : 0.01	4 : 0.01	
] : 0.17	g : 0.15	= : 0.13	f : 0.12	e : 0.10	d : 0.06	c : 0.05	i : 0.05	3 : 0.03	6 : 0.01	F : 0.01	b : 0.01	2 : 0.01	o : 0.01	4 : 0.01	
g : 0.17	c : 0.13	f : 0.12	= : 0.12	e : 0.08	] : 0.05	: : 0.03	d : 0.03	a : 0.03	5 : 0.03	2 : 0.03	i : 0.03	6 : 0.01	F : 0.01	3 : 0.01	b : 0.01	o : 0.01	4 : 0.01	
c : 0.17	g : 0.13	f : 0.12	= : 0.10	e : 0.08	: : 0.06	2 : 0.05	4 : 0.03	5 : 0.03	b : 0.03	d : 0.03	] : 0.01	6 : 0.01	F : 0.01	D : 0.01	i : 0.01	7 : 0.01	o : 0.01	

#score	764.5297778603239
#seq	58
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_UTR_m2_run1.txt

#BEAR
%%%%ggggggg[ccclllccc333ggggggg333c	chr16:618516-618744(+)$1	228	112	147	10.0868
fff[ggggggg!!aooooooa22ggggggg]ffff	chr22:20073309-20073559(+)$1	250	9	44	11.2981
=======[bb[bboooooobb]bb]==========	chr6:27094964-27095191(-)$1	227	89	124	12.3780
b[accc####ddddllldddd333ccc]a]bb22h	chr1:2122202-2122496(-)$1	294	199	234	11.2126
ee[ffffffcccooooooccc333ffffff333ee	chr19:40741696-40741934(-)$1	238	31	66	12.4442
[ffffff[a[ddddmmmmdddd]a]ffffff]eee	chr19:2270187-2270442(+)$1	255	123	158	9.8658
iii[bb"""ddddoooooodddd4444bb]iiiii	chr13:113918551-113918803(+)$1	252	152	187	10.1676
$$eeeee####bbmmmmbb333eeeeeeeeee]cc	chr19:46142055-46142293(-)$1	238	58	93	9.4223
eee"""ccc[cccnnnnncccccc333eeeee333	chr17:72858658-72858970(-)$1	312	147	182	12.8302
ffdddd[bb[cccnnnnnccc]bb]dddd22ffff	chr10:115933766-115933985(-)$1	219	68	103	12.4119
a[eeeeeffffffnnnnnffffff]eeeee]a]cc	chr19:18111975-18112272(+)$1	297	162	197	10.5173
=====####ccc[aannnnna]a]ccc]=======	chrX:153686577-153686833(+)$1	256	166	201	11.6376
==[eeeee[bb[ccclllccc]bb]eeeee=====	chr1:27022508-27022754(+)$1	246	192	227	10.5965
[bb[bb[bbddddnnnnndddd4444bb]bb]bb]	chr17:28443947-28444164(+)$1	217	95	130	9.7226
eee!!eeeee[bbnnnnnbb22eeeee22eeeee]	chr1:26232387-26232649(-)$1	262	101	136	11.1772
"ffffffddddbboooooobb333dddd22fffff	chr13:113918603-113918862(+)$1	259	31	66	10.9990
!!ccc$$$$$cccmmmmccc4444ccc]bb22fff	chr10:105154009-105154218(-)$1	209	12	47	10.2053
[dddd[ccc!!bboooooobb22ccc]ddddbb]b	chr10:105153954-105154208(-)$1	254	104	139	11.3065
:ggggggg[a[bbnnnnnbb]a]ggggggg::eee	chr11:61583234-61583502(-)$1	268	34	69	10.2647
[dddd[bb"""bbnnnnnbb333bbdddd]ccc]g	chr1:182360767-182360997(-)$1	230	94	129	13.3824
d!!ccc[ccc[bbnnnnnbb]ccc22ccc22dddd	chr9:134269414-134269692(+)$1	278	113	148	11.2602
b[accc####ddddllldddd333ccc]a]bb22h	chr1:2122099-2122402(-)$1	303	105	140	11.2126
ffff!!ccc!!cccmmmmccc22ccc333ffffff	chr17:27717788-27718008(+)$1	220	76	111	11.5970
[ccc!!gggggggnnnnnggggggg22ccc]aeee	chr11:3877203-3877466(+)$1	263	63	98	11.7198
d[a!!ccc[ddddnnnnndddd]ccc]a]dddd::	chr3:49050518-49050775(+)$1	257	182	217	9.5931
dd[ccc[bb[accclllccc]a]bb]cccdddd]c	chr17:27717611-27717858(+)$1	247	142	177	10.7641
cc!!ccc####cccmmmmccc333ccc]ccc22ff	chr3:49050262-49050495(+)$1	233	39	74	12.3669
c!!ffffff!!bbnnnnnbb22ffffff]ccc]dd	chr3:49055793-49056057(-)$1	264	128	163	12.3542
ccc[ccceeeeeooooooeeeee]ccc]ccceeee	chr17:46656335-46656607(-)$1	272	46	81	9.4346
affffff[bb[bboooooobb22bbffffff]a]e	chr19:46142229-46142544(-)$1	315	140	175	11.1883
dddd[a[a!!bboooooobb]a]a]dddd:=====	chr3:20081641-20081854(+)$1	213	10	45	10.7821
g!!dddd"""ddddllldddd333ddddggggggg	chr14:23426069-23426293(-)$1	224	80	115	11.5577
[ccceeeee[cccnnnnnccc]eeeee]ccc22ee	chr10:121700992-121701244(+)$1	252	95	130	12.7957
[iiiiiiiii!!ccclllccc22iiiiiiiii]cc	chr7:5569502-5569746(-)$1	244	207	242	12.3896
fff[a[gggggggnnnnnggggggga]ffffff]b	chr22:46509488-46509744(+)$1	256	30	65	11.4476
[eeeee[bb!!bboooooobb22bb]eeeee]bbc	chr19:1878684-1878932(-)$1	248	187	222	11.5451
!eeeee[bb!!cccmmmmccc]bb]eeeee22ddd	chr3:49057855-49058094(-)$1	239	79	114	10.4616
fffffdddd!!bbnnnnnbb333dddd]ffffff]	chr17:33968795-33969030(+)$1	235	103	138	12.6501
!ffffff[a[ddddlllddddaffffff333dddd	chr19:2429949-2430206(-)$1	257	164	199	9.9562
==========cccnnnnnccc::ggggggg[bbrr	chr12:62997081-62997361(+)$1	280	128	163	10.8023
[bb!!gggggggannnnna]ggggggg]bbeeeee	chr1:2123591-2123833(-)$1	242	30	65	11.3620
ffff[a[bb[cccnnnnnccc]bb]a333ffffff	chr13:113863071-113863331(+)$1	260	184	219	13.3619
eeee[bb[addddnnnnndddd]a]bb]eeeee22	chr22:20067798-20068007(+)$1	209	145	180	10.5651
%%%ggggggg[ccclllccc333ggggggg333cc	chr16:618544-618760(+)$1	216	85	120	11.2926
ee[eeeee!!cccmmmmccc4444eeeee]eeeee	chr3:49058343-49058552(-)$1	209	105	140	10.9194
[dddd[bb"""bbnnnnnbb333bbdddd]ccc]g	chr1:182360744-182360967(-)$1	223	64	99	13.3824
::dddd!!a[cccnnnnnccc]a]dddd:ccc[a[	chr2:242707056-242707337(+)$1	281	49	84	9.9845
eeecccccc!!cccmmmmccc22ccc4444ccc]e	chr11:64073737-64073985(+)$1	248	73	108	11.5493
[ffffff"""cccmmmmccc333ffffffa]bb::	chr9:140006577-140006827(-)$1	250	47	82	9.5140
dd[eeeeeddddoooooodddd22eeeee]ddddg	chr19:9785438-9785701(-)$1	263	12	47	9.4718
ggggggddddcccnnnnnccc]dddd]ggggggg:	chr1:2325968-2326243(+)$1	275	238	273	11.2969
ggggggg####ccclllccc22ggggggg:ccc[c	chr17:27717311-27717662(+)$1	351	118	153	11.2487
dd[ffffff[cccnnnnncccffffffddddgggg	chr22:21983337-21983582(-)$1	245	3	38	11.8200
=======[bb[bboooooobb]bb]==========	chr6:27094956-27095164(-)$1	208	62	97	12.3780
eccc[a[ffffffnnnnnffffff]accc]eeeee	chr3:49058680-49058908(-)$1	228	157	192	10.8714
[abb[ddddddddnnnnndddd22dddd]bb]a]d	chr17:46655730-46655996(-)$1	266	206	241	10.2426
ffdddd[bb[cccnnnnnccc]bb]dddd22ffff	chr10:115933787-115934029(-)$1	242	112	147	12.4119

#otherMatches

#Seq PSSM
UCCCAGGCUGCCCCUGCCAGGCCUGCAGCCUCCCC	chr16:618516-618744(+)$1	228	112	147	10.0868
CUGUCUACAUUAAUGAAAAGAGCAAUGUGGCCAGC	chr22:20073309-20073559(+)$1	250	9	44	11.2981
GAGAGCUGCUGUUGGAACAGGGAGGAGUUCUCCGG	chr6:27094964-27095191(-)$1	227	89	124	12.3780
UGGUCUGAGGGCAGAGGCUGUAGGGGAGCGAGGGG	chr1:2122202-2122496(-)$1	294	199	234	11.2126
CGCCUCUUCGAGCUCAUCCUCAUGGAAGAGAUCCG	chr19:40741696-40741934(-)$1	238	31	66	12.4442
CGAGCGUGCGCUGCGGGAGCGGGGAGCGCUUUGCG	chr19:2270187-2270442(+)$1	255	123	158	9.8658
UUGCAAUAAUAAAGUUUGGUUUGGUUUUUACAGUC	chr13:113918551-113918803(+)$1	252	152	187	10.1676
UUCAUCGGAGACCUCCGGGGAGCGGUGGGGGUGGA	chr19:46142055-46142293(-)$1	238	58	93	9.4223
AGGCUUGGCUGCUCUUCCAGCGUCUCUCCUCCCUC	chr17:72858658-72858970(-)$1	312	147	182	12.8302
GCUGAGUGAGGCGUCGGCUGUGUUUCUCACCGCGG	chr10:115933766-115933985(-)$1	219	68	103	12.4119
CGUGCGCAGCUUCGCGCUGGAGCUggcgcggggcc	chr19:18111975-18112272(+)$1	297	162	197	10.5173
CCACCCGGAGCCAGCGGAGGGACAGGUAGGUGGCC	chrX:153686577-153686833(+)$1	256	166	201	11.6376
ccgccgccAGCCCGGAGCCUGAGCCggcggggcgg	chr1:27022508-27022754(+)$1	246	192	227	10.5965
CCGUACAUUUUCCCGGAUGGAAGCCCGAAGUUUGA	chr17:28443947-28444164(+)$1	217	95	130	9.7226
GCCGGGUUCCCCAUUGUCUGAAGGGACGGGGCGGU	chr1:26232387-26232649(-)$1	262	101	136	11.1772
UGGCAGUCCCUGUUUUUUUGCAUUGGGGUAACUGC	chr13:113918603-113918862(+)$1	259	31	66	10.9990
CAGUUUCCAUAGUAAUGACUCCCUGACAGAUAUCU	chr10:105154009-105154218(-)$1	209	12	47	10.2053
ACCGGCUCGUCUGUGUUGCCAAUCGACUCGGCGUG	chr10:105153954-105154208(-)$1	254	104	139	11.3065
CCUGCGUCGUGUGAAGACUGGAGGACGCGGAAGGG	chr11:61583234-61583502(-)$1	268	34	69	10.2647
CGGAGCGUGUGAGCAGUACUGCGGCCUCCUCUCCU	chr1:182360767-182360997(-)$1	230	94	129	13.3824
ggagcgagcgagcgagcAGCCCGCGCCGCCGCCUC	chr9:134269414-134269692(+)$1	278	113	148	11.2602
UGGUCUGAGGGCAGAGGCUGUAGGGGAGCGAGGGG	chr1:2122099-2122402(-)$1	303	105	140	11.2126
cgccgccccUUGUUGCAGAGCUUGGGCUGGGCGGC	chr17:27717788-27718008(+)$1	220	76	111	11.5970
GCAGCCCCGGCGGACCCACUGUUGGACCUGAGGAG	chr11:3877203-3877466(+)$1	263	63	98	11.7198
UGGUGGCUAUGUGUAUACCACAGGGCGUGAUGGAG	chr3:49050518-49050775(+)$1	257	182	217	9.5931
CGACGGAGACGGCUCCCGGCACUUCCCCGCGCCAU	chr17:27717611-27717858(+)$1	247	142	177	10.7641
GCGUGGUUAUGAGGAGCUCCUGUUGCUGGCAUCGG	chr3:49050262-49050495(+)$1	233	39	74	12.3669
UCCGGUGUGGAUCAAGGAGACGCGCACCCGCCACC	chr3:49055793-49056057(-)$1	264	128	163	12.3542
AGUGUGGGAAACCAAGUCGUUUCUCCAGGCUUGGG	chr17:46656335-46656607(-)$1	272	46	81	9.4346
GGGUCCUUGGUGACUCCCUUCUUCCAggaucgcgu	chr19:46142229-46142544(-)$1	315	140	175	11.1883
GGCAGGAGAACCAAGGGAGGGCGUGUGCUGUGGCG	chr3:20081641-20081854(+)$1	213	10	45	10.7821
GUUCUGGGGUGUAGACGCUGCUGGCCAGCCCGCCC	chr14:23426069-23426293(-)$1	224	80	115	11.5577
UGAUUUUCUUUUGUUACGUAGUGGAAACAUUUUGC	chr10:121700992-121701244(+)$1	252	95	130	12.7957
GAACCGGGCGGAGGCGGGGCUGGCGCCCGGUUGGG	chr7:5569502-5569746(-)$1	244	207	242	12.3896
CUGGGCGGGGGGCGGCGGGCCCUCCCGCAGUGCAA	chr22:46509488-46509744(+)$1	256	30	65	11.4476
AUGGCUGCCAGGGAGCAGGCCAGGGAGGCCGAGGC	chr19:1878684-1878932(-)$1	248	187	222	11.5451
CCCCAGACAUACUUUACUGAGCUGCUUGGGUCUCA	chr3:49057855-49058094(-)$1	239	79	114	10.4616
CAGCUCACUCUGCUUACUGCCAUAGUGAAGCUGUU	chr17:33968795-33969030(+)$1	235	103	138	12.6501
AGAGCGCUGUGGAGCCCCUCCCGUGUUCCAGCUCC	chr19:2429949-2430206(-)$1	257	164	199	9.9562
AGAGCGGUGGCUGACGUACAGAACGCCGGCUGUAU	chr12:62997081-62997361(+)$1	280	128	163	10.8023
UCAGGUCCAGGCCUUGGUGUGUCUGGAAUGCUUCA	chr1:2123591-2123833(-)$1	242	30	65	11.3620
UCACUGCGCUGACCCUUCGUCUGCCCCUUGUGAAA	chr13:113863071-113863331(+)$1	260	184	219	13.3619
ggcgggcgccgcggccugcgcgagggcgcgcccuu	chr22:20067798-20068007(+)$1	209	145	180	10.5651
CCCAGGCUGCCCCUGCCAGGCCUGCAGCCUCCCCA	chr16:618544-618760(+)$1	216	85	120	11.2926
CGCGCUUCCCUCCUGACGGAUUCCGAAGCCCGCCC	chr3:49058343-49058552(-)$1	209	105	140	10.9194
CGGAGCGUGUGAGCAGUACUGCGGCCUCCUCUCCU	chr1:182360744-182360967(-)$1	223	64	99	13.3824
UGUGCCCUUGUCCCUCCAGGAGAUGGUAACCUGCA	chr2:242707056-242707337(+)$1	281	49	84	9.9845
GACAGCGGGAGUAUAAGAGUGGACCUGCAGGCUGG	chr11:64073737-64073985(+)$1	248	73	108	11.5493
AUCCCCUGCAGGACCAUUCCGAGGGGGGACAGGUU	chr9:140006577-140006827(-)$1	250	47	82	9.5140
UGAGUUCUACCUGCUUGGGGGUCCGGGACAUACCA	chr19:9785438-9785701(-)$1	263	12	47	9.4718
uccucacugcCCUGCCGAGGGAGCAGAUGGGGGGU	chr1:2325968-2326243(+)$1	275	238	273	11.2969
GGUGGCAAAGAGACUGAGUCGGUGCCGCCGCCUGC	chr17:27717311-27717662(+)$1	351	118	153	11.2487
CCAGUUUGGAGGGCGUUACUCCCAGGCGGGGCUGG	chr22:21983337-21983582(-)$1	245	3	38	11.8200
GAGAGCUGCUGUUGGAACAGGGAGGAGUUCUCCGG	chr6:27094956-27095164(-)$1	208	62	97	12.3780
AGUCGCUGGCCCCCGCGCGGGGUUUGGGCAUCUCG	chr3:49058680-49058908(-)$1	228	157	192	10.8714
GCCUAACUUUGUUCACUUGACAGUAAGUAGGAGGG	chr17:46655730-46655996(-)$1	266	206	241	10.2426
GCUGAGUGAGGCGUCGGCUGUGUUUCUCACCGCGG	chr10:115933787-115934029(-)$1	242	112	147	12.4119

#DB
....(((((((.(((...)))...)))))))...)	chr16:618516-618744(+)$1	1	112	147	10.0868
(((.(((((((..(......)..))))))).))))	chr22:20073309-20073559(+)$1	1	9	44	11.2981
(((((((.((.((......)).)).))))))))))	chr6:27094964-27095191(-)$1	1	89	124	12.3780
(.((((....((((...))))...))).).))..)	chr1:2122202-2122496(-)$1	1	199	234	11.2126
((.(((((((((......)))...))))))...))	chr19:40741696-40741934(-)$1	1	31	66	12.4442
.((((((.(.((((....)))).).)))))).)))	chr19:2270187-2270442(+)$1	1	123	158	9.8658
(((.((...((((......))))....)).)))))	chr13:113918551-113918803(+)$1	1	152	187	10.1676
..(((((....((....))...)))))))))).))	chr19:46142055-46142293(-)$1	1	58	93	9.4223
(((...(((.(((.....))))))...)))))...	chr17:72858658-72858970(-)$1	1	147	182	12.8302
((((((.((.(((.....))).)).))))..))))	chr10:115933766-115933985(-)$1	1	68	103	12.4119
(.(((((((((((.....)))))).))))).).))	chr19:18111975-18112272(+)$1	1	162	197	10.5173
(((((....(((.((.....).).))).)))))))	chrX:153686577-153686833(+)$1	1	166	201	11.6376
((.(((((.((.(((...))).)).))))))))))	chr1:27022508-27022754(+)$1	1	192	227	10.5965
.((.((.((((((.....))))....)).)).)).	chr17:28443947-28444164(+)$1	1	95	130	9.7226
(((..(((((.((.....))..)))))..))))).	chr1:26232387-26232649(-)$1	1	101	136	11.1772
.((((((((((((......))...))))..)))))	chr13:113918603-113918862(+)$1	1	31	66	10.9990
..(((.....(((....)))....))).))..)))	chr10:105154009-105154218(-)$1	1	12	47	10.2053
.((((.(((..((......))..))).)))))).)	chr10:105153954-105154208(-)$1	1	104	139	11.3065
.(((((((.(.((.....)).).)))))))..(((	chr11:61583234-61583502(-)$1	1	34	69	10.2647
.((((.((...((.....))...)))))).))).)	chr1:182360767-182360997(-)$1	1	94	129	13.3824
(..(((.(((.((.....)).)))..)))..))))	chr9:134269414-134269692(+)$1	1	113	148	11.2602
(.((((....((((...))))...))).).))..)	chr1:2122099-2122402(-)$1	1	105	140	11.2126
((((..(((..(((....)))..)))...))))))	chr17:27717788-27718008(+)$1	1	76	111	11.5970
.(((..(((((((.....)))))))..))).)(((	chr11:3877203-3877466(+)$1	1	63	98	11.7198
(.(..(((.((((.....)))).))).).))))..	chr3:49050518-49050775(+)$1	1	182	217	9.5931
((.(((.((.((((...))).).)).))))))).)	chr17:27717611-27717858(+)$1	1	142	177	10.7641
((..(((....(((....)))...))).)))..))	chr3:49050262-49050495(+)$1	1	39	74	12.3669
(..((((((..((.....))..)))))).))).))	chr3:49055793-49056057(-)$1	1	128	163	12.3542
(((.((((((((......))))).))).)))))))	chr17:46656335-46656607(-)$1	1	46	81	9.4346
(((((((.((.((......))..)))))))).).)	chr19:46142229-46142544(-)$1	1	140	175	11.1883
((((.(.(..((......)).).).)))).(((((	chr3:20081641-20081854(+)$1	1	10	45	10.7821
(..((((...((((...))))...)))))))))))	chr14:23426069-23426293(-)$1	1	80	115	11.5577
.((((((((.(((.....))).))))).)))..))	chr10:121700992-121701244(+)$1	1	95	130	12.7957
.(((((((((..(((...)))..))))))))).))	chr7:5569502-5569746(-)$1	1	207	242	12.3896
(((.(.(((((((.....)))))))).)))))).)	chr22:46509488-46509744(+)$1	1	30	65	11.4476
.(((((.((..((......))..)).))))).)))	chr19:1878684-1878932(-)$1	1	187	222	11.5451
.(((((.((..(((....))).)).)))))..)))	chr3:49057855-49058094(-)$1	1	79	114	10.4616
(((((((((..((.....))...)))).)))))).	chr17:33968795-33969030(+)$1	1	103	138	12.6501
.((((((.(.((((...)))))))))))...))))	chr19:2429949-2430206(-)$1	1	164	199	9.9562
))))))))))(((.....)))..(((((((.((..	chr12:62997081-62997361(+)$1	1	128	163	10.8023
.((..((((((((.....).))))))).)))))))	chr1:2123591-2123833(-)$1	1	30	65	11.3620
((((.(.((.(((.....))).)).)...))))))	chr13:113863071-113863331(+)$1	1	184	219	13.3619
((((.((.(((((.....)))).).)).)))))..	chr22:20067798-20068007(+)$1	1	145	180	10.5651
...(((((((.(((...)))...)))))))...))	chr16:618544-618760(+)$1	1	85	120	11.2926
((.(((((..(((....)))....))))).)))))	chr3:49058343-49058552(-)$1	1	105	140	10.9194
.((((.((...((.....))...)))))).))).)	chr1:182360744-182360967(-)$1	1	64	99	13.3824
..((((..(.(((.....))).).)))).(((.(.	chr2:242707056-242707337(+)$1	1	49	84	9.9845
(((((((((..(((....)))..)))....))).)	chr11:64073737-64073985(+)$1	1	73	108	11.5493
.((((((...(((....)))...))))))).))..	chr9:140006577-140006827(-)$1	1	47	82	9.5140
((.(((((((((......))))..))))).)))))	chr19:9785438-9785701(-)$1	1	12	47	9.4718
(((((((((((((.....))).)))).))))))).	chr1:2325968-2326243(+)$1	1	238	273	11.2969
(((((((....(((...)))..))))))).(((.(	chr17:27717311-27717662(+)$1	1	118	153	11.2487
((.((((((.(((.....)))))))))))))((((	chr22:21983337-21983582(-)$1	1	3	38	11.8200
(((((((.((.((......)).)).))))))))))	chr6:27094956-27095164(-)$1	1	62	97	12.3780
((((.(.((((((.....)))))).)))).)))))	chr3:49058680-49058908(-)$1	1	157	192	10.8714
.(((.((((((((.....))))..)))).)).).)	chr17:46655730-46655996(-)$1	1	206	241	10.2426
((((((.((.(((.....))).)).))))..))))	chr10:115933787-115934029(-)$1	1	112	147	12.4119

#PSSM
[ : 0.21	f : 0.12	e : 0.12	d : 0.10	= : 0.08	! : 0.05	c : 0.05	g : 0.05	% : 0.03	b : 0.03	a : 0.03	: : 0.03	i : 0.01	$ : 0.01	" : 0.01	
f : 0.21	e : 0.14	d : 0.12	= : 0.08	c : 0.08	[ : 0.07	! : 0.07	g : 0.05	% : 0.03	i : 0.03	b : 0.03	$ : 0.01	: : 0.01	a : 0.01	
f : 0.17	e : 0.14	d : 0.12	[ : 0.10	c : 0.08	= : 0.07	! : 0.07	a : 0.05	b : 0.05	g : 0.05	% : 0.03	i : 0.03	
f : 0.19	c : 0.15	e : 0.14	d : 0.14	[ : 0.08	= : 0.07	! : 0.07	g : 0.07	% : 0.01	" : 0.01	i : 0.01	b : 0.01	
f : 0.15	c : 0.14	e : 0.14	d : 0.12	g : 0.10	! : 0.08	[ : 0.08	= : 0.07	b : 0.03	" : 0.01	i : 0.01	a : 0.01	
e : 0.15	c : 0.14	f : 0.14	g : 0.12	d : 0.10	[ : 0.07	= : 0.05	b : 0.05	a : 0.05	! : 0.03	" : 0.01	# : 0.01	$ : 0.01	i : 0.01	
[ : 0.17	g : 0.14	f : 0.14	e : 0.12	c : 0.12	d : 0.07	= : 0.05	# : 0.05	b : 0.05	" : 0.01	$ : 0.01	i : 0.01	! : 0.01	
b : 0.15	g : 0.12	[ : 0.10	# : 0.10	c : 0.10	e : 0.10	f : 0.08	d : 0.07	" : 0.05	$ : 0.01	a : 0.01	i : 0.01	= : 0.01	! : 0.01	
b : 0.17	g : 0.10	# : 0.10	f : 0.08	" : 0.08	c : 0.08	d : 0.08	a : 0.07	[ : 0.05	e : 0.05	! : 0.03	$ : 0.01	i : 0.01	= : 0.01	
[ : 0.17	! : 0.15	d : 0.14	g : 0.10	# : 0.08	b : 0.07	" : 0.07	c : 0.05	f : 0.03	e : 0.03	$ : 0.01	a : 0.01	i : 0.01	= : 0.01	
c : 0.24	d : 0.21	! : 0.14	[ : 0.12	g : 0.08	# : 0.05	f : 0.03	b : 0.03	" : 0.03	a : 0.01	e : 0.01	
c : 0.36	b : 0.26	d : 0.19	g : 0.05	[ : 0.03	! : 0.03	f : 0.03	e : 0.01	
c : 0.38	b : 0.24	d : 0.17	o : 0.07	f : 0.03	g : 0.03	! : 0.01	[ : 0.01	a : 0.01	
n : 0.43	o : 0.19	c : 0.17	d : 0.08	m : 0.07	a : 0.03	
n : 0.43	o : 0.21	m : 0.15	l : 0.12	c : 0.05	a : 0.01	
n : 0.45	o : 0.21	l : 0.17	m : 0.15	
n : 0.45	o : 0.21	l : 0.17	m : 0.15	
n : 0.45	o : 0.21	c : 0.10	m : 0.08	d : 0.07	l : 0.05	b : 0.01	
c : 0.40	d : 0.17	b : 0.15	o : 0.14	f : 0.03	g : 0.03	n : 0.01	e : 0.01	a : 0.01	
c : 0.40	b : 0.24	d : 0.19	f : 0.03	g : 0.03	o : 0.01	3 : 0.01	n : 0.01	e : 0.01	] : 0.01	
c : 0.29	d : 0.19	b : 0.10	3 : 0.10	] : 0.07	2 : 0.05	g : 0.05	a : 0.03	f : 0.03	4 : 0.03	e : 0.01	
3 : 0.22	] : 0.19	2 : 0.17	d : 0.12	a : 0.07	f : 0.05	g : 0.05	c : 0.03	4 : 0.03	e : 0.01	: : 0.01	
3 : 0.21	2 : 0.15	b : 0.12	] : 0.10	f : 0.08	e : 0.07	g : 0.07	4 : 0.05	d : 0.03	c : 0.03	a : 0.03	: : 0.01	
b : 0.21	g : 0.14	3 : 0.12	c : 0.10	f : 0.10	4 : 0.07	a : 0.05	e : 0.05	] : 0.05	d : 0.03	2 : 0.03	i : 0.01	
] : 0.21	c : 0.17	g : 0.15	d : 0.10	f : 0.08	e : 0.08	b : 0.08	4 : 0.03	3 : 0.01	2 : 0.01	i : 0.01	
d : 0.19	c : 0.17	e : 0.14	g : 0.12	f : 0.12	a : 0.05	= : 0.03	4 : 0.03	2 : 0.03	] : 0.03	3 : 0.01	i : 0.01	b : 0.01	
d : 0.17	c : 0.15	e : 0.15	g : 0.12	f : 0.12	] : 0.07	3 : 0.05	= : 0.03	4 : 0.03	b : 0.03	2 : 0.01	i : 0.01	
d : 0.19	] : 0.17	e : 0.14	g : 0.12	f : 0.12	c : 0.07	= : 0.03	b : 0.03	3 : 0.03	2 : 0.01	a : 0.01	i : 0.01	4 : 0.01	
e : 0.15	g : 0.14	d : 0.12	c : 0.12	f : 0.10	] : 0.07	= : 0.05	b : 0.05	3 : 0.05	a : 0.03	2 : 0.03	i : 0.01	: : 0.01	4 : 0.01	
] : 0.14	e : 0.14	g : 0.12	f : 0.12	c : 0.10	2 : 0.07	b : 0.07	d : 0.07	= : 0.05	: : 0.03	i : 0.01	3 : 0.01	4 : 0.01	a : 0.01	
c : 0.15	e : 0.14	f : 0.12	= : 0.08	2 : 0.08	d : 0.08	] : 0.07	b : 0.07	g : 0.05	3 : 0.05	i : 0.03	: : 0.01	[ : 0.01	
f : 0.14	e : 0.14	c : 0.10	= : 0.08	b : 0.08	] : 0.08	d : 0.08	2 : 0.07	3 : 0.05	g : 0.05	i : 0.03	a : 0.03	: : 0.01	
f : 0.15	e : 0.15	d : 0.10	= : 0.08	b : 0.08	3 : 0.07	2 : 0.07	] : 0.07	c : 0.07	g : 0.05	a : 0.03	i : 0.01	[ : 0.01	
e : 0.17	f : 0.15	] : 0.14	= : 0.08	d : 0.08	c : 0.07	2 : 0.05	g : 0.05	3 : 0.03	b : 0.03	: : 0.03	i : 0.01	r : 0.01	a : 0.01	[ : 0.01	
e : 0.19	c : 0.14	f : 0.14	= : 0.08	g : 0.08	d : 0.08	] : 0.05	: : 0.05	h : 0.03	b : 0.03	i : 0.01	3 : 0.01	r : 0.01	2 : 0.01	[ : 0.01	

#score	639.4807766184206
#seq	57
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF304YLR_TBRG4_CDS_m1_run2.txt

#BEAR
[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]d	chrM:4846-5085(+)$1	239	82	116	44.5006
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10827-11055(+)$1	228	48	82	47.2641
[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]d	chrM:4778-5019(+)$1	241	150	184	44.5006
eee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:9783-10002(+)$1	219	54	88	46.2246
b^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:7744-7957(+)$1	213	69	103	46.2781
eee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:9757-9977(+)$1	220	80	114	46.2246
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10146-10373(+)$1	227	116	150	47.2641
:dddd^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrM:15425-15658(+)$1	233	195	229	41.6674
:ffffff^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:13375-13593(+)$1	218	122	156	35.0896
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:13608-13840(+)$1	232	64	98	47.5064
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:13305-13575(+)$1	270	112	146	46.8194
c[dddd^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrM:7793-8044(+)$1	251	137	171	41.0064
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10795-11002(+)$1	207	80	114	47.2641
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10782-10990(+)$1	208	93	127	47.2641
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:13393-13598(+)$1	205	24	58	46.8194
eee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:9744-9957(+)$1	213	93	127	46.2246
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10803-11027(+)$1	224	72	106	47.2641
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ee	chrM:4623-4856(+)$1	233	97	131	46.6453
c[dddd^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrM:7869-8109(+)$1	240	61	95	41.0064
bb[ccc^^^^^^^^^^^^^^^^^^^^^^^ccc]b	chrM:7910-8119(+)$1	209	15	49	39.7759
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10791-10995(+)$1	204	84	118	47.2641
b^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:7783-7989(+)$1	206	30	64	46.2781
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:13259-13474(+)$1	215	158	192	46.8194
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10710-10950(+)$1	240	165	199	47.2641
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:13589-13808(+)$1	219	83	117	47.5064
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:9033-9282(+)$1	249	58	92	47.2641
:ffffff^^^^^^^^^^^^^^^^^^^^^ffffff	chrM:13437-13679(+)$1	242	60	94	35.0896
ee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:13398-13610(+)$1	212	19	53	46.8194
:dddd^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrM:15458-15708(+)$1	250	162	196	41.6674
ddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chrM:9835-10043(+)$1	208	2	36	45.6016
ccc^^^^^^^^^^^^^^^^^^^^^^^ccc:bb[d	chrM:10756-10982(+)$1	226	19	53	38.6362
bb[ccc^^^^^^^^^^^^^^^^^^^^^^^ccc]b	chrM:7844-8049(+)$1	205	81	115	39.7759
eee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:9654-9874(+)$1	220	183	217	46.2246
eee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:9726-9943(+)$1	217	111	145	46.2246
eee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:9779-9983(+)$1	204	58	92	46.2246
[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]d	chrM:4819-5046(+)$1	227	109	143	44.5006
'eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eee	chrM:13804-14076(+)$1	272	119	153	42.2718
c[dddd^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrM:7789-7993(+)$1	204	141	175	41.0064
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bbe	chrM:11032-11262(+)$1	230	83	117	46.8526
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^fff	chrM:11267-11493(+)$1	226	29	63	46.9454
ccc^^^^^^^^^^^^^^^^^^^^^^^ccc:bb[d	chrM:10750-10956(+)$1	206	25	59	38.6362

#otherMatches

#Seq PSSM
UCUCCUCACUCUCUCAAUCUUAUCCAUCAUAGCA	chrM:4846-5085(+)$1	239	82	116	44.5006
UACUAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10827-11055(+)$1	228	48	82	47.2641
UCUCCUCACUCUCUCAAUCUUAUCCAUCAUAGCA	chrM:4778-5019(+)$1	241	150	184	44.5006
GGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCC	chrM:9783-10002(+)$1	219	54	88	46.2246
CGCCCUCCCAUCCCUACGCAUCCUUUACAUAACA	chrM:7744-7957(+)$1	213	69	103	46.2781
GGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCC	chrM:9757-9977(+)$1	220	80	114	46.2246
AAUUGCCCUCCUUUUACCCCUACCAUGAGCCCUA	chrM:10146-10373(+)$1	227	116	150	47.2641
CUUGCCCUAUUACUAUCCAUCCUCAUCCUAGCAA	chrM:15425-15658(+)$1	233	195	229	41.6674
AGGUUUCUACUCCAAAGACCACAUCAUCGAAACC	chrM:13375-13593(+)$1	218	122	156	35.0896
AAUAACCCCACCCUACUAAACCCCAUUAAACGCC	chrM:13608-13840(+)$1	232	64	98	47.5064
GGACUACUCAAAACCAUACCUCUCACUUCAACCU	chrM:13305-13575(+)$1	270	112	146	46.8194
ACUAAUCUUCAACUCCUACAUACUUCCCCCAUUA	chrM:7793-8044(+)$1	251	137	171	41.0064
UACUAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10795-11002(+)$1	207	80	114	47.2641
UACUAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10782-10990(+)$1	208	93	127	47.2641
GGACUACUCAAAACCAUACCUCUCACUUCAACCU	chrM:13393-13598(+)$1	205	24	58	46.8194
GGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCC	chrM:9744-9957(+)$1	213	93	127	46.2246
UACUAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10803-11027(+)$1	224	72	106	47.2641
GAACCAUAACCAAUACUACCAAUCAAUACUCAUC	chrM:4623-4856(+)$1	233	97	131	46.6453
ACUAAUCUUCAACUCCUACAUACUUCCCCCAUUA	chrM:7869-8109(+)$1	240	61	95	41.0064
GGCGGACUAAUCUUCAACUCCUACAUACUUCCCC	chrM:7910-8119(+)$1	209	15	49	39.7759
UACUAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10791-10995(+)$1	204	84	118	47.2641
CGCCCUCCCAUCCCUACGCAUCCUUUACAUAACA	chrM:7783-7989(+)$1	206	30	64	46.2781
GGACUACUCAAAACCAUACCUCUCACUUCAACCU	chrM:13259-13474(+)$1	215	158	192	46.8194
UACUAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10710-10950(+)$1	240	165	199	47.2641
AAUAACCCCACCCUACUAAACCCCAUUAAACGCC	chrM:13589-13808(+)$1	219	83	117	47.5064
ACACUUAUCAUCUUCACAAUUCUAAUUCUACUGA	chrM:9033-9282(+)$1	249	58	92	47.2641
AGGUUUCUACUCCAAAGACCACAUCAUCGAAACC	chrM:13437-13679(+)$1	242	60	94	35.0896
GGACUACUCAAAACCAUACCUCUCACUUCAACCU	chrM:13398-13610(+)$1	212	19	53	46.8194
CUUGCCCUAUUACUAUCCAUCCUCAUCCUAGCAA	chrM:15458-15708(+)$1	250	162	196	41.6674
GGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCC	chrM:9835-10043(+)$1	208	2	36	45.6016
GUCCCAACAAUUAUAUUACUACCACUGACAUGAC	chrM:10756-10982(+)$1	226	19	53	38.6362
GGCGGACUAAUCUUCAACUCCUACAUACUUCCCC	chrM:7844-8049(+)$1	205	81	115	39.7759
GGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCC	chrM:9654-9874(+)$1	220	183	217	46.2246
GGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCC	chrM:9726-9943(+)$1	217	111	145	46.2246
GGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCC	chrM:9779-9983(+)$1	204	58	92	46.2246
UCUCCUCACUCUCUCAAUCUUAUCCAUCAUAGCA	chrM:4819-5046(+)$1	227	109	143	44.5006
CCCUAGCAUCACACACCGCACAAUCCCCUAUCUA	chrM:13804-14076(+)$1	272	119	153	42.2718
ACUAAUCUUCAACUCCUACAUACUUCCCCCAUUA	chrM:7789-7993(+)$1	204	141	175	41.0064
AUAUCUUCUUCGAAACCACACUUAUCCCCACCUU	chrM:11032-11262(+)$1	230	83	117	46.8526
CACUCUCACUGCCCAAGAACUAUCAAACUCCUGA	chrM:11267-11493(+)$1	226	29	63	46.9454
GUCCCAACAAUUAUAUUACUACCACUGACAUGAC	chrM:10750-10956(+)$1	206	25	59	38.6362

#DB
.((...........................)).)	chrM:4846-5085(+)$1	1	82	116	44.5006
...............................)))	chrM:10827-11055(+)$1	1	48	82	47.2641
.((...........................)).)	chrM:4778-5019(+)$1	1	150	184	44.5006
(((............................)))	chrM:9783-10002(+)$1	1	54	88	46.2246
(.................................	chrM:7744-7957(+)$1	1	69	103	46.2781
(((............................)))	chrM:9757-9977(+)$1	1	80	114	46.2246
...............................)))	chrM:10146-10373(+)$1	1	116	150	47.2641
.((((.........................))))	chrM:15425-15658(+)$1	1	195	229	41.6674
.((((((.....................))))))	chrM:13375-13593(+)$1	1	122	156	35.0896
...............................)))	chrM:13608-13840(+)$1	1	64	98	47.5064
((.............................)))	chrM:13305-13575(+)$1	1	112	146	46.8194
(.((((........................))))	chrM:7793-8044(+)$1	1	137	171	41.0064
...............................)))	chrM:10795-11002(+)$1	1	80	114	47.2641
...............................)))	chrM:10782-10990(+)$1	1	93	127	47.2641
((.............................)))	chrM:13393-13598(+)$1	1	24	58	46.8194
(((............................)))	chrM:9744-9957(+)$1	1	93	127	46.2246
...............................)))	chrM:10803-11027(+)$1	1	72	106	47.2641
((..............................))	chrM:4623-4856(+)$1	1	97	131	46.6453
(.((((........................))))	chrM:7869-8109(+)$1	1	61	95	41.0064
((.(((.......................))).)	chrM:7910-8119(+)$1	1	15	49	39.7759
...............................)))	chrM:10791-10995(+)$1	1	84	118	47.2641
(.................................	chrM:7783-7989(+)$1	1	30	64	46.2781
((.............................)))	chrM:13259-13474(+)$1	1	158	192	46.8194
...............................)))	chrM:10710-10950(+)$1	1	165	199	47.2641
...............................)))	chrM:13589-13808(+)$1	1	83	117	47.5064
...............................)))	chrM:9033-9282(+)$1	1	58	92	47.2641
.((((((.....................))))))	chrM:13437-13679(+)$1	1	60	94	35.0896
((.............................)))	chrM:13398-13610(+)$1	1	19	53	46.8194
.((((.........................))))	chrM:15458-15708(+)$1	1	162	196	41.6674
(((............................)))	chrM:9835-10043(+)$1	1	2	36	45.6016
(((.......................))).((.(	chrM:10756-10982(+)$1	1	19	53	38.6362
((.(((.......................))).)	chrM:7844-8049(+)$1	1	81	115	39.7759
(((............................)))	chrM:9654-9874(+)$1	1	183	217	46.2246
(((............................)))	chrM:9726-9943(+)$1	1	111	145	46.2246
(((............................)))	chrM:9779-9983(+)$1	1	58	92	46.2246
.((...........................)).)	chrM:4819-5046(+)$1	1	109	143	44.5006
.(((((.........................)))	chrM:13804-14076(+)$1	1	119	153	42.2718
(.((((........................))))	chrM:7789-7993(+)$1	1	141	175	41.0064
...............................)))	chrM:11032-11262(+)$1	1	83	117	46.8526
...............................)))	chrM:11267-11493(+)$1	1	29	63	46.9454
(((.......................))).((.(	chrM:10750-10956(+)$1	1	25	59	38.6362

#PSSM
^ : 0.29	e : 0.26	c : 0.12	b : 0.09	: : 0.09	[ : 0.07	d : 0.02	' : 0.02	
^ : 0.34	e : 0.29	b : 0.12	d : 0.07	[ : 0.07	f : 0.04	c : 0.04	
^ : 0.46	e : 0.17	d : 0.14	b : 0.07	f : 0.04	[ : 0.04	c : 0.04	
^ : 0.75	d : 0.12	f : 0.04	c : 0.04	e : 0.02	
^ : 0.75	d : 0.12	f : 0.04	c : 0.04	e : 0.02	
^ : 0.80	d : 0.07	f : 0.04	c : 0.04	e : 0.02	
^ : 0.95	f : 0.04	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.95	c : 0.04	
^ : 0.95	c : 0.04	
^ : 0.90	f : 0.04	c : 0.04	
^ : 0.85	f : 0.04	c : 0.04	: : 0.04	
^ : 0.65	b : 0.12	d : 0.12	f : 0.04	c : 0.04	
e : 0.31	c : 0.24	b : 0.14	d : 0.14	^ : 0.07	f : 0.07	
e : 0.34	c : 0.19	d : 0.14	] : 0.12	f : 0.07	^ : 0.04	[ : 0.04	b : 0.02	
e : 0.36	d : 0.26	c : 0.19	f : 0.07	^ : 0.04	b : 0.04	

#score	1825.485144885104
#seq	41
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_UTR_m1_run1.txt

#BEAR
gggg[cccuuuuuuuuuuuucccggg	chr9:114159229-114159472(-)$1	243	211	237	24.3200
eefffffftttttttttttffffff2	chr20:52185550-52185805(-)$1	255	165	191	21.6387
::eeeeevvvvvvvvvvvvveeeee:	chr14:35742590-35742871(+)$1	281	100	126	22.6220
iiffffffuuuuuuuuuuuuffffff	chr12:112525440-112525706(-)$1	266	63	89	23.2181
!!ddddwwwwwwwwwwwwwwdddd22	chr5:52351713-52351946(+)$1	233	104	130	23.7730
ff[cccwwwwwwwwwwwwwwccc]ff	chr6:56380270-56380488(-)$1	218	156	182	23.7528
:ffffffuuuuuuuuuuuuffffff:	chrX:106312392-106312730(-)$1	338	291	317	21.0004
cc:ddddyyyyyyyyyyyyyyyyddd	chr14:102551211-102551433(-)$1	222	195	221	18.7410
b[eeeeevvvvvvvvvvvvveeeee]	chr17:15973629-15973892(-)$1	263	166	192	25.7222
b[ddddwwwwwwwwwwwwwwdddd22	chr2:62998388-62998606(+)$1	218	45	71	23.4445
dddd[bbwwwwwwwwwwwwwwbb]dd	chr17:62558906-62559189(-)$1	283	234	260	21.7897
geeeeewwwwwwwwwwwwwweeeee3	chr2:61705878-61706119(-)$1	241	82	108	24.6594
gggggggwwwwwwwwwwwwwwggggg	chr14:68352524-68352806(+)$1	282	35	61	23.9782
dda[dddduuuuuuuuuuuudddd]a	chr21:40636453-40636709(-)$1	256	179	205	23.1015
g"""dddduuuuuuuuuuuuddddgg	chr1:76215069-76215346(+)$1	277	8	34	23.6697
========uuuuuuuuuuuu======	chr4:39219549-39219818(+)$1	269	4	30	24.1748
iiiiiiwwwwwwwwwwwwwwiiiiii	chr7:11030229-11030454(+)$1	225	73	99	24.0202
hhhhhhhvvvvvvvvvvvvvhhhhhh	chr6:43521014-43521246(-)$1	232	50	76	22.5680
==eeeeevvvvvvvvvvvvveeeee]	chr16:70551428-70551699(-)$1	271	51	77	25.9063
gggggggwwwwwwwwwwwwwwggggg	chr8:48869634-48869875(-)$1	241	141	167	23.9782
eeeeeyyyyyyyyyyyyyyyyeeeee	chr18:39661034-39661366(+)$1	332	185	211	21.0208
::eeeeevvvvvvvvvvvvveeeeeF	chr2:109106202-109106449(+)$1	247	182	208	23.0406
&&&&cccvvvvvvvvvvvvvccceee	chr2:55900084-55900315(-)$1	231	172	198	22.5887
f"""cccvvvvvvvvvvvvvccc]ff	chr17:27417007-27417211(-)$1	204	90	116	25.1660
=======vvvvvvvvvvvvv======	chr5:122281671-122281955(+)$1	284	228	254	25.3481
ggggggguuuuuuuuuuuuggggggg	chr17:80755545-80755780(+)$1	235	61	87	23.4931
ca[dddduuuuuuuuuuuudddd]a]	chr17:8166191-8166412(+)$1	221	73	99	23.3961
ffffffwwwwwwwwwwwwwwffffff	chr3:39135434-39135664(+)$1	230	30	56	23.0995
hhhheeeeettttttttttteeeee3	chr3:69126916-69127164(-)$1	248	141	167	21.7543
:ffffffvvvvvvvvvvvvvffffff	chr12:32735054-32735506(+)$1	452	284	310	23.3791
iiiiiiyyyyyyyyyyyyyyyyiiii	chr11:43413269-43413527(+)$1	258	11	37	21.1447
h[eeeeevvvvvvvvvvvvveeeeeh	chr3:56597973-56598253(+)$1	280	56	82	25.3129
a!!ddddwwwwwwwwwwwwwwdddd2	chr18:19155203-19155448(-)$1	245	109	135	23.8145
[ffffffuuuuuuuuuuuuffffff]	chr13:103506082-103506336(+)$1	254	96	122	23.2253
ffffffyyyyyyyyyyyyyyyyffff	chr12:93245850-93246098(-)$1	248	100	126	20.3249
eeeeecccuuuuuuuuuuuuccc]ee	chr7:156961667-156961904(+)$1	237	187	213	24.1315
===!!ddddtttttttttttdddd33	chr6:121604862-121605113(-)$1	251	190	216	22.1241
hhhhhhhvvvvvvvvvvvvvhhhhhh	chr10:52349809-52350054(-)$1	245	23	49	22.5680
""eeeeettttttttttteeeee333	chr20:57246109-57246379(+)$1	270	62	88	22.2156
!!addddvvvvvvvvvvvvvdddd44	chr11:57077663-57077914(-)$1	251	115	141	24.9466
eeeeexxxxxxxxxxxxxxxeeeee2	chr1:176015284-176015541(-)$1	257	221	247	19.6964
effffffwwwwwwwwwwwwwwfffff	chr17:48814246-48814482(+)$1	236	36	62	23.1096
cc!!cccuuuuuuuuuuuucccccc]	chr6:41839194-41839459(-)$1	265	84	110	24.1051
eeeeeeevvvvvvvvvvvvveeeee2	chr1:235318249-235318473(-)$1	224	130	156	25.6229
$$$$cccvvvvvvvvvvvvvccc22h	chr2:8918999-8919294(-)$1	295	88	114	23.9097
c"""cccwwwwwwwwwwwwwwccc33	chr4:186605881-186606101(-)$1	220	49	75	24.4469
ccceeeeeuuuuuuuuuuuueeeee2	chr17:79575651-79575882(-)$1	231	84	110	24.3403
eeeeeeeeuuuuuuuuuuuueeeee]	chr2:109086920-109087180(+)$1	260	36	62	24.3926
!!eeeeevvvvvvvvvvvvveeeee3	chr11:3060316-3060566(-)$1	250	32	58	26.1141
ccc!!cccuuuuuuuuuuuuccc333	chr7:143549071-143549332(-)$1	261	179	205	24.5245
"""ddddvvvvvvvvvvvvvdddd22	chr5:118865487-118865766(+)$1	279	7	33	24.9493
ee!!cccvvvvvvvvvvvvvccceee	chr14:31855612-31855871(-)$1	259	179	205	25.3084
eefffffftttttttttttffffff2	chr6:82900748-82900996(-)$1	248	29	55	21.6387
iiiiiiiiuuuuuuuuuuuuiiiiii	chr7:102065430-102065690(+)$1	260	2	28	23.8227
[eeeeewwwwwwwwwwwwwweeeee]	chr18:2795914-2796197(+)$1	283	224	250	24.6515
ff"""bbvvvvvvvvvvvvvbb333f	chr2:242206133-242206352(-)$1	219	123	149	23.5807

#otherMatches

#Seq PSSM
UUGUUCUCUUUAUCACAUUUGAGGCA	chr9:114159229-114159472(-)$1	243	211	237	24.3200
CUUUUGUACCAAAUAGCAAUACAAAC	chr20:52185550-52185805(-)$1	255	165	191	21.6387
CAUACCAUAUGAUGAAGACUUGGUAG	chr14:35742590-35742871(+)$1	281	100	126	22.6220
UUGAAGUAUAACUUAAAUCUUAUUUC	chr12:112525440-112525706(-)$1	266	63	89	23.2181
UUGGGUACUUAAACAGAAACGCCCUU	chr5:52351713-52351946(+)$1	233	104	130	23.7730
GACAGAAACACAAUCAAUCAUCUCUC	chr6:56380270-56380488(-)$1	218	156	182	23.7528
CUAGAGAUUACCUAUAACCUCUCUAA	chrX:106312392-106312730(-)$1	338	291	317	21.0004
ACAAACCUGAAAUUGAAGAUGUUGGU	chr14:102551211-102551433(-)$1	222	195	221	18.7410
UGUGCCAGAGAACAUAAAAGUGGUAG	chr17:15973629-15973892(-)$1	263	166	192	25.7222
AUGUAUUUCAAUUCCAUUUCAUAUUU	chr2:62998388-62998606(+)$1	218	45	71	23.4445
ACUUUCCCAACAACAGCCUCAGGCAG	chr17:62558906-62559189(-)$1	283	234	260	21.7897
CUGAUGAAGAGAAACAUAAACGUCAA	chr2:61705878-61706119(-)$1	241	82	108	24.6594
GUUUGUGCUAUUUUUUUCACCCACAG	chr14:68352524-68352806(+)$1	282	35	61	23.9782
CAGCAGGCUCCUCAUCUUAUGCCUCC	chr21:40636453-40636709(-)$1	256	179	205	23.1015
UUAAAAUAUAUCAAUUUUCUUAUUAG	chr1:76215069-76215346(+)$1	277	8	34	23.6697
UGGUUUACUCAAAUAAAUCUGUGAGC	chr4:39219549-39219818(+)$1	269	4	30	24.1748
UGAUAUAUGUUAAUAUUUUAAUAUUA	chr7:11030229-11030454(+)$1	225	73	99	24.0202
UUCUCACCUUCAUUCGUGCAGUGGGA	chr6:43521014-43521246(-)$1	232	50	76	22.5680
UCCAGUCCUAAUCUGCAGCUGAUUGA	chr16:70551428-70551699(-)$1	271	51	77	25.9063
UAAGGUAAGAAUUAAAAAACAUACCU	chr8:48869634-48869875(-)$1	241	141	167	23.9782
ACCAUAUUUUCCAAAUAUUACAUGGU	chr18:39661034-39661366(+)$1	332	185	211	21.0208
UUGCAGUCUGAACAUGAUACACUGCU	chr2:109106202-109106449(+)$1	247	182	208	23.0406
UAUACCCAACAAAUAAUUCAGGGCAU	chr2:55900084-55900315(-)$1	231	172	198	22.5887
UCUAGCUACAAGCCCUCCAGAGCCAG	chr17:27417007-27417211(-)$1	204	90	116	25.1660
AUGUCUUACCACUUUUUCUCAGGACA	chr5:122281671-122281955(+)$1	284	228	254	25.3481
UUAAAAAUCUUUUUUUUUUUUUUUAG	chr17:80755545-80755780(+)$1	235	61	87	23.4931
CCGUCUACAGGAUUGGAGUUGGAGGU	chr17:8166191-8166412(+)$1	221	73	99	23.3961
UCUUCUAAUAAUGAAAAACCAGGAGA	chr3:39135434-39135664(+)$1	230	30	56	23.0995
CGCUGGAACCAUGUAAAGAAGUUCCU	chr3:69126916-69127164(-)$1	248	141	167	21.7543
GAGAGGGAAAAUGGGGAAAGCCCUCU	chr12:32735054-32735506(+)$1	452	284	310	23.3791
GUAUUUCAAAAUAAACACUACAAGAU	chr11:43413269-43413527(+)$1	258	11	37	21.1447
ACAGCUGAAAACAUGAAGAGCAGUUU	chr3:56597973-56598253(+)$1	280	56	82	25.3129
GGAGGUUAGAUAAGAACUGCAAACCA	chr18:19155203-19155448(-)$1	245	109	135	23.8145
UUUUUGAAAAGACAAGCCAUCAAAAC	chr13:103506082-103506336(+)$1	254	96	122	23.2253
GAAUUAAACAAAGAGGCAACUGUAAU	chr12:93245850-93246098(-)$1	248	100	126	20.3249
GGAGAGCUUAUUUUAAAUAUGGUAUC	chr7:156961667-156961904(+)$1	237	187	213	24.1315
CUAAAAAUAUUUAAGUAUUCUAUUGU	chr6:121604862-121605113(-)$1	251	190	216	22.1241
AUGUUGCUUUGCUUAUUCUUGCAGCG	chr10:52349809-52350054(-)$1	245	23	49	22.5680
AAACAAUCUAUCCAACACAUUGUGCA	chr20:57246109-57246379(+)$1	270	62	88	22.2156
AUCGGCCAGGAGGAGAUGGAGGCCAG	chr11:57077663-57077914(-)$1	251	115	141	24.9466
UCAGGUAUUUACAUUAUUUUCUUGAC	chr1:176015284-176015541(-)$1	257	221	247	19.6964
CAAGCAAUUUUUUAAGUACCUUUGUU	chr17:48814246-48814482(+)$1	236	36	62	23.1096
GUAAUAGAGAAGAGGAAACCUAACCA	chr6:41839194-41839459(-)$1	265	84	110	24.1051
UAAAGUAGCAGAUAGAAAAAUACUUG	chr1:235318249-235318473(-)$1	224	130	156	25.6229
AUAAAGGCAAUUAACCAGAACCUCAA	chr2:8918999-8919294(-)$1	295	88	114	23.9097
ACGUGCUUUUCCCGUUGCCUUGGCCU	chr4:186605881-186606101(-)$1	220	49	75	24.4469
GUCCUUCCACGCCUACAUCCGGAAGC	chr17:79575651-79575882(-)$1	231	84	110	24.3403
UACUAGCUAAAGAAGAACAGGGCUGU	chr2:109086920-109087180(+)$1	260	36	62	24.3926
UUCCCUCCCCAGAUCAUCAAGAGGGC	chr11:3060316-3060566(-)$1	250	32	58	26.1141
UAGGGAAGAAAAUAUCCUAGCUUAUA	chr7:143549071-143549332(-)$1	261	179	205	24.5245
AAAAUAAUAAAUUUUAAACUUUGUAC	chr5:118865487-118865766(+)$1	279	7	33	24.9493
GAACUUGGAAAUCUCAUACACAAUCU	chr14:31855612-31855871(-)$1	259	179	205	25.3084
AGAAACCACUGAAACUAAUUGGUUUA	chr6:82900748-82900996(-)$1	248	29	55	21.6387
CUGUAAUUUGAAUGUCGUGUGGUUAC	chr7:102065430-102065690(+)$1	260	2	28	23.8227
UUUAUAUGGAGAUAAAUAUUUAUGAU	chr18:2795914-2796197(+)$1	283	224	250	24.6515
UGGUUCCGCAACAAAUCAAAGGUGAC	chr2:242206133-242206352(-)$1	219	123	149	23.5807

#DB
((((.(((............))))))	chr9:114159229-114159472(-)$1	1	211	237	24.3200
((((((((...........)))))).	chr20:52185550-52185805(-)$1	1	165	191	21.6387
..(((((.............))))).	chr14:35742590-35742871(+)$1	1	100	126	22.6220
))((((((............))))))	chr12:112525440-112525706(-)$1	1	63	89	23.2181
..((((..............))))..	chr5:52351713-52351946(+)$1	1	104	130	23.7730
((.(((..............))).))	chr6:56380270-56380488(-)$1	1	156	182	23.7528
.((((((............)))))).	chrX:106312392-106312730(-)$1	1	291	317	21.0004
)).((((................)))	chr14:102551211-102551433(-)$1	1	195	221	18.7410
(.(((((.............))))).	chr17:15973629-15973892(-)$1	1	166	192	25.7222
(.((((..............))))..	chr2:62998388-62998606(+)$1	1	45	71	23.4445
((((.((..............)).))	chr17:62558906-62559189(-)$1	1	234	260	21.7897
((((((..............))))).	chr2:61705878-61706119(-)$1	1	82	108	24.6594
(((((((..............)))))	chr14:68352524-68352806(+)$1	1	35	61	23.9782
))(.((((............)))).)	chr21:40636453-40636709(-)$1	1	179	205	23.1015
(...((((............))))))	chr1:76215069-76215346(+)$1	1	8	34	23.6697
((((((((............))))))	chr4:39219549-39219818(+)$1	1	4	30	24.1748
((((((..............))))))	chr7:11030229-11030454(+)$1	1	73	99	24.0202
(((((((.............))))))	chr6:43521014-43521246(-)$1	1	50	76	22.5680
(((((((.............))))).	chr16:70551428-70551699(-)$1	1	51	77	25.9063
(((((((..............)))))	chr8:48869634-48869875(-)$1	1	141	167	23.9782
(((((................)))))	chr18:39661034-39661366(+)$1	1	185	211	21.0208
..(((((.............))))))	chr2:109106202-109106449(+)$1	1	182	208	23.0406
....(((.............))))))	chr2:55900084-55900315(-)$1	1	172	198	22.5887
(...(((.............))).))	chr17:27417007-27417211(-)$1	1	90	116	25.1660
(((((((.............))))))	chr5:122281671-122281955(+)$1	1	228	254	25.3481
(((((((............)))))))	chr17:80755545-80755780(+)$1	1	61	87	23.4931
((.((((............)))).).	chr17:8166191-8166412(+)$1	1	73	99	23.3961
((((((..............))))))	chr3:39135434-39135664(+)$1	1	30	56	23.0995
(((((((((...........))))).	chr3:69126916-69127164(-)$1	1	141	167	21.7543
.((((((.............))))))	chr12:32735054-32735506(+)$1	1	284	310	23.3791
((((((................))))	chr11:43413269-43413527(+)$1	1	11	37	21.1447
(.(((((.............))))))	chr3:56597973-56598253(+)$1	1	56	82	25.3129
(..((((..............)))).	chr18:19155203-19155448(-)$1	1	109	135	23.8145
.((((((............)))))).	chr13:103506082-103506336(+)$1	1	96	122	23.2253
((((((................))))	chr12:93245850-93246098(-)$1	1	100	126	20.3249
((((((((............))).))	chr7:156961667-156961904(+)$1	1	187	213	24.1315
(((..((((...........))))..	chr6:121604862-121605113(-)$1	1	190	216	22.1241
(((((((.............))))))	chr10:52349809-52350054(-)$1	1	23	49	22.5680
..(((((...........)))))...	chr20:57246109-57246379(+)$1	1	62	88	22.2156
..(((((.............))))..	chr11:57077663-57077914(-)$1	1	115	141	24.9466
(((((...............))))).	chr1:176015284-176015541(-)$1	1	221	247	19.6964
(((((((..............)))))	chr17:48814246-48814482(+)$1	1	36	62	23.1096
((..(((............)))))).	chr6:41839194-41839459(-)$1	1	84	110	24.1051
(((((((.............))))).	chr1:235318249-235318473(-)$1	1	130	156	25.6229
....(((.............)))..)	chr2:8918999-8919294(-)$1	1	88	114	23.9097
(...(((..............)))..	chr4:186605881-186606101(-)$1	1	49	75	24.4469
((((((((............))))).	chr17:79575651-79575882(-)$1	1	84	110	24.3403
((((((((............))))).	chr2:109086920-109087180(+)$1	1	36	62	24.3926
..(((((.............))))).	chr11:3060316-3060566(-)$1	1	32	58	26.1141
(((..(((............)))...	chr7:143549071-143549332(-)$1	1	179	205	24.5245
...((((.............))))..	chr5:118865487-118865766(+)$1	1	7	33	24.9493
((..(((.............))))))	chr14:31855612-31855871(-)$1	1	179	205	25.3084
((((((((...........)))))).	chr6:82900748-82900996(-)$1	1	29	55	21.6387
((((((((............))))))	chr7:102065430-102065690(+)$1	1	2	28	23.8227
.(((((..............))))).	chr18:2795914-2796197(+)$1	1	224	250	24.6515
((...((.............))...)	chr2:242206133-242206352(-)$1	1	123	149	23.5807

#PSSM
e : 0.16	g : 0.10	c : 0.10	f : 0.08	: : 0.07	i : 0.07	= : 0.07	h : 0.07	! : 0.05	b : 0.03	d : 0.03	[ : 0.03	" : 0.03	& : 0.01	a : 0.01	$ : 0.01	
e : 0.17	f : 0.14	" : 0.08	g : 0.07	i : 0.07	! : 0.07	c : 0.07	= : 0.07	[ : 0.05	h : 0.05	: : 0.03	d : 0.03	& : 0.01	a : 0.01	$ : 0.01	
e : 0.24	f : 0.16	" : 0.08	g : 0.07	d : 0.05	= : 0.05	i : 0.05	h : 0.05	! : 0.05	[ : 0.03	a : 0.03	c : 0.03	: : 0.01	& : 0.01	$ : 0.01	
e : 0.26	f : 0.16	d : 0.14	g : 0.07	" : 0.07	! : 0.07	i : 0.05	h : 0.05	= : 0.03	c : 0.01	[ : 0.01	& : 0.01	$ : 0.01	
e : 0.28	f : 0.16	d : 0.16	c : 0.12	g : 0.05	i : 0.05	[ : 0.03	= : 0.03	h : 0.03	! : 0.03	" : 0.01	
e : 0.23	c : 0.17	d : 0.17	f : 0.16	g : 0.05	i : 0.05	b : 0.03	= : 0.03	h : 0.03	y : 0.01	x : 0.01	
e : 0.19	c : 0.16	d : 0.14	f : 0.12	w : 0.12	g : 0.05	y : 0.05	b : 0.03	= : 0.03	h : 0.03	x : 0.01	i : 0.01	
v : 0.32	w : 0.23	u : 0.08	y : 0.07	c : 0.05	f : 0.05	d : 0.05	e : 0.05	= : 0.01	t : 0.01	x : 0.01	i : 0.01	
v : 0.32	u : 0.26	w : 0.23	y : 0.07	t : 0.05	e : 0.01	d : 0.01	x : 0.01	
v : 0.32	u : 0.26	w : 0.23	t : 0.08	y : 0.07	x : 0.01	
v : 0.32	u : 0.26	w : 0.23	t : 0.08	y : 0.07	x : 0.01	
v : 0.32	u : 0.26	w : 0.23	t : 0.08	y : 0.07	x : 0.01	
v : 0.32	u : 0.26	w : 0.23	t : 0.08	y : 0.07	x : 0.01	
v : 0.32	u : 0.26	w : 0.23	t : 0.08	y : 0.07	x : 0.01	
v : 0.32	u : 0.26	w : 0.23	t : 0.08	y : 0.07	x : 0.01	
v : 0.32	u : 0.26	w : 0.23	t : 0.08	y : 0.07	x : 0.01	
v : 0.32	u : 0.26	w : 0.23	t : 0.08	y : 0.07	x : 0.01	
v : 0.32	u : 0.26	w : 0.23	t : 0.08	y : 0.07	x : 0.01	
v : 0.32	u : 0.26	w : 0.23	t : 0.07	y : 0.07	e : 0.01	x : 0.01	
v : 0.32	w : 0.23	u : 0.17	f : 0.07	y : 0.07	t : 0.03	g : 0.01	d : 0.01	e : 0.01	x : 0.01	c : 0.01	
e : 0.24	c : 0.16	d : 0.14	f : 0.12	w : 0.10	y : 0.07	= : 0.03	i : 0.03	h : 0.03	g : 0.01	b : 0.01	
e : 0.26	c : 0.17	d : 0.16	f : 0.14	y : 0.05	g : 0.05	b : 0.03	= : 0.03	i : 0.03	h : 0.03	
e : 0.26	c : 0.17	f : 0.16	d : 0.16	g : 0.05	i : 0.05	= : 0.03	h : 0.03	y : 0.01	b : 0.01	3 : 0.01	
e : 0.28	f : 0.16	d : 0.16	] : 0.08	g : 0.07	i : 0.05	3 : 0.05	= : 0.03	h : 0.03	c : 0.03	2 : 0.01	
e : 0.30	f : 0.19	g : 0.08	3 : 0.08	2 : 0.07	d : 0.05	i : 0.05	= : 0.03	h : 0.03	] : 0.01	a : 0.01	4 : 0.01	c : 0.01	
2 : 0.16	f : 0.14	] : 0.12	3 : 0.12	g : 0.08	h : 0.07	e : 0.07	i : 0.05	: : 0.03	d : 0.03	= : 0.03	a : 0.01	F : 0.01	4 : 0.01	

#score	1312.389174683643
#seq	56
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_transcript_m1_run2.txt

#BEAR
=======ttttttttttt======	chr17:30697162-30697484(+)$1	322	74	98	21.4668
!!eeeeettttttttttteeeee6	chr12:76448726-76448970(-)$1	244	122	146	20.6529
a!!ccctttttttttttccca]ff	chr3:142761871-142762106(+)$1	235	151	175	22.2023
!eeeeeuuuuuuuuuuuueeeee2	chr7:91708335-91708692(+)$1	357	205	229	22.7065
ffffffwwwwwwwwwwwwwwffff	chr2:153568147-153568406(-)$1	259	152	176	21.5310
gggggguuuuuuuuuuuugggggg	chr14:21821545-21821791(-)$1	246	68	92	23.2608
ggggggwwwwwwwwwwwwwwgggg	chr7:1473944-1474313(-)$1	369	282	306	22.4586
c[dddduuuuuuuuuuuudddd66	chr7:29685517-29685791(-)$1	274	211	235	22.2639
[eeeeeuuuuuuuuuuuueeeee]	chr17:73664500-73664813(+)$1	313	244	268	22.8291
!eeeeewwwwwwwwwwwwwweeee	chr21:34931062-34931290(+)$1	228	137	161	21.9900
gggggvvvvvvvvvvvvvgggggg	chr4:6710115-6710377(-)$1	262	67	91	22.9759
:cccwwwwwwwwwwwwwwcccggg	chr10:70532661-70532958(+)$1	297	14	38	21.6667
eeeeewwwwwwwwwwwwwweeeee	chr21:34931090-34931350(+)$1	260	110	134	21.8583
ff[bbwwwwwwwwwwwwwwbbfff	chr13:111545288-111545560(-)$1	272	45	69	21.3599
!!ddddyyyyyyyyyyyyyyyydd	chr2:44458314-44458692(+)$1	378	30	54	19.6299
hhhhhhuuuuuuuuuuuuhhhhhh	chr10:12077037-12077324(-)$1	287	253	277	21.0777
gg!!bbtttttttttttbb4444g	chr16:2867269-2867521(+)$1	252	81	105	20.7599
:eeeeevvvvvvvvvvvvveeeee	chr12:6879030-6879258(+)$1	228	191	215	21.5651
ddddccctttttttttttccc]dd	chr21:34932809-34933061(+)$1	252	144	168	21.5827
ggggggwwwwwwwwwwwwwwgggg	chr15:93445294-93445543(+)$1	249	50	74	22.4586
ddd!!avvvvvvvvvvvvva22dd	chr1:70716305-70716561(+)$1	256	153	177	22.3452
ee"""bbtttttttttttbb333e	chr14:73572803-73573092(+)$1	289	114	138	20.2873
$ddddvvvvvvvvvvvvvddddcc	chr5:149114145-149114413(+)$1	268	67	91	22.5218
###cccxxxxxxxxxxxxxxxccc	chr11:129991479-129991802(+)$1	323	204	228	18.1343
===xxxxxxxxxxxxxxx======	chr12:401895-402292(-)$1	397	53	77	17.8596
ffffffuuuuuuuuuuuuffffff	chr10:14888536-14888841(+)$1	305	98	122	22.2104
cc[cccuuuuuuuuuuuuccc]cc	chr21:34930178-34930424(+)$1	246	120	144	24.1182
iiii[attttttttttta]iiiii	chr5:32601159-32601430(+)$1	271	109	133	22.0810
b!!cccwwwwwwwwwwwwwwccc2	chr9:131456196-131456417(+)$1	221	116	140	22.7163
gggggguuuuuuuuuuuugggggg	chr7:138991982-138992318(+)$1	336	35	59	23.2608
cccxxxxxxxxxxxxxxxccc]ee	chr21:33053584-33053894(-)$1	310	86	110	17.8927
iiiiivvvvvvvvvvvvviiiiii	chr6:153291580-153291828(-)$1	248	79	103	23.0247
iiiiiiwwwwwwwwwwwwwwiiii	chr6:31797635-31797871(+)$1	236	45	69	22.5109
b!!cccwwwwwwwwwwwwwwccc2	chr9:131456217-131456421(+)$1	204	95	119	22.7163
"ccc[attttttttttta]ccc33	chr22:40354372-40354641(+)$1	269	26	50	22.5060
""cccvvvvvvvvvvvvvccc]cc	chr12:69667921-69668192(+)$1	271	91	115	23.7690
ffffffuuuuuuuuuuuuffffff	chr3:37366602-37366869(+)$1	267	242	266	22.2104
$ddddvvvvvvvvvvvvvdddd33	chr2:26321443-26321692(+)$1	249	91	115	22.6703
ffffffwwwwwwwwwwwwwwffff	chr2:153568091-153568347(-)$1	256	93	117	21.5310
dddcccvvvvvvvvvvvvvccc::	chr14:70238224-70238480(+)$1	256	216	240	21.3713
#ddddxxxxxxxxxxxxxxxdddd	chr6:31797671-31797957(+)$1	286	152	176	17.7765
+++cccuuuuuuuuuuuuccc>>>	chr9:139734671-139734912(+)$1	241	111	135	21.2899
d[cccvvvvvvvvvvvvvccc]dd	chr3:11357913-11358254(+)$1	341	15	39	23.3238
""dddduuuuuuuuuuuudddd33	chr5:65374347-65374642(+)$1	295	104	128	23.3175
d[ddddvvvvvvvvvvvvvdddd]	chr12:46752294-46752612(-)$1	318	95	119	22.7667
b[ddddtttttttttttdddd]bb	chr18:9516857-9517167(+)$1	310	110	134	20.6316
[cccwwwwwwwwwwwwwwccc]dd	chr1:59247128-59247426(-)$1	298	7	31	22.4994
ccyyyyyyyyyyyyyyyyccc]bb	chr15:93527468-93527730(+)$1	262	213	237	19.6278
ffffffvvvvvvvvvvvvvfffff	chr5:158584772-158585100(-)$1	328	80	104	22.1166
eee[ccctttttttttttccc]ee	chr1:76260167-76260452(+)$1	285	183	207	21.6946
i!!ccctttttttttttccc22ii	chr13:92003580-92003866(+)$1	286	148	172	21.8709
b[dddduuuuuuuuuuuudddd]b	chr1:111490554-111490815(-)$1	261	174	198	22.7293
"""ddddtttttttttttdddd33	chr19:6414389-6414623(-)$1	234	92	116	21.2866
c::cccwwwwwwwwwwwwwwccc:	chr8:101930882-101931120(-)$1	238	184	208	19.8233
ffffbbuuuuuuuuuuuubb]fff	chr2:47387784-47388043(-)$1	259	221	245	21.9160
hhhhhhuuuuuuuuuuuuhhhhhh	chr6:99859075-99859356(-)$1	281	98	122	21.0777
ffyyyyyyyyyyyyyyyyffffff	chr2:29169490-29169765(+)$1	275	172	196	18.9929
$ddddvvvvvvvvvvvvvdddd33	chr11:65267300-65267524(+)$1	224	105	129	22.6703
::ddddvvvvvvvvvvvvvdddd:	chr3:142757693-142757904(+)$1	211	9	33	19.9311
cc[cccvvvvvvvvvvvvvccccc	chr8:26182369-26182658(+)$1	289	25	49	23.6424
ddddwwwwwwwwwwwwwwdddd:D	chr9:136905107-136905426(-)$1	319	169	193	19.4969
ffffffuuuuuuuuuuuuffffff	chr22:22115138-22115400(-)$1	262	24	48	22.2104
hhhhhhuuuuuuuuuuuuhhhhhh	chrX:64737892-64738188(-)$1	296	266	290	21.0777

#otherMatches

#Seq PSSM
AAUGUGUAACAAUAUUUAAUGUAU	chr17:30697162-30697484(+)$1	322	74	98	21.4668
AGCACUUGAAAGAUAUUAAAGUGA	chr12:76448726-76448970(-)$1	244	122	146	20.6529
UACUCUAAUCCAAUCAAAGAAGAA	chr3:142761871-142762106(+)$1	235	151	175	22.2023
AUAUUGGACAGAAGACAUCAAUGA	chr7:91708335-91708692(+)$1	357	205	229	22.7065
guacuuuuuaagaagccuauaggu	chr2:153568147-153568406(-)$1	259	152	176	21.5310
CUAUUCUAAGGAGUCAUUGGGUAG	chr14:21821545-21821791(-)$1	246	68	92	23.2608
GUGGUCUCAAUAAAGAAACCGACC	chr7:1473944-1474313(-)$1	369	282	306	22.4586
uagccaucucucggucacuggcaa	chr7:29685517-29685791(-)$1	274	211	235	22.2639
AUUUCAUUUGUCAGAUUUUGGAAC	chr17:73664500-73664813(+)$1	313	244	268	22.8291
uguauauguauuccuucucuugua	chr21:34931062-34931290(+)$1	228	137	161	21.9900
AACAGCUUGUCAUUUUCUCUGUUU	chr4:6710115-6710377(-)$1	262	67	91	22.9759
ugggcaauauggcaaaaccccguc	chr10:70532661-70532958(+)$1	297	14	38	21.6667
guauauguauuccuucucuuguac	chr21:34931090-34931350(+)$1	260	110	134	21.8583
AUCUGAACCAUUUCUAUAACAAUG	chr13:111545288-111545560(-)$1	272	45	69	21.3599
UUUGUGUGUUGUUUGAUUUGUUUA	chr2:44458314-44458692(+)$1	378	30	54	19.6299
GCUGCUCAGAUGAAGUAAGGCAGU	chr10:12077037-12077324(-)$1	287	253	277	21.0777
CUGGCGGGAUGGGGAGGCGGGGGA	chr16:2867269-2867521(+)$1	252	81	105	20.7599
GUCAGGGUGGGUUUGAAGACCUGA	chr12:6879030-6879258(+)$1	228	191	215	21.5651
AACAGUUUACUUUUAUUUAACUUG	chr21:34932809-34933061(+)$1	252	144	168	21.5827
GUAUUUUAUCCUCACAAUUUAGAU	chr15:93445294-93445543(+)$1	249	50	74	22.4586
CAUGAAGAAGACAUGGAUAUGAGU	chr1:70716305-70716561(+)$1	256	153	177	22.3452
GGAAAUCAGAGAACGAAAGAAAAC	chr14:73572803-73573092(+)$1	289	114	138	20.2873
cuccaucaaacucauuccuggauu	chr5:149114145-149114413(+)$1	268	67	91	22.5218
aagaCUAUGAUGUUUAUAAAAGGU	chr11:129991479-129991802(+)$1	323	204	228	18.1343
GGAGAAGGAAAACAGAAGUCCAAG	chr12:401895-402292(-)$1	397	53	77	17.8596
gugggaaacucauaauuguccuac	chr10:14888536-14888841(+)$1	305	98	122	22.2104
AUGCUAAAAUAUUGCUGCUAGGAU	chr21:34930178-34930424(+)$1	246	120	144	24.1182
AUGUUCUCCAAGCUAUUGUAUGUU	chr5:32601159-32601430(+)$1	271	109	133	22.0810
gaaggagagguaaaagaaAAUUUG	chr9:131456196-131456417(+)$1	221	116	140	22.7163
UAUACUGUAUUUCAAAUAAGUGUG	chr7:138991982-138992318(+)$1	336	35	59	23.2608
UACUUUUCAAAAACUUUUGUAUAA	chr21:33053584-33053894(-)$1	310	86	110	17.8927
GUAAAUAUUUCUGUAUUUUUUAUA	chr6:153291580-153291828(-)$1	248	79	103	23.0247
UUUGAGGUGGACUGUUGGGACUCA	chr6:31797635-31797871(+)$1	236	45	69	22.5109
gaaggagagguaaaagaaAAUUUG	chr9:131456217-131456421(+)$1	204	95	119	22.7163
cagaucuuaauuauuuuguucuuu	chr22:40354372-40354641(+)$1	269	26	50	22.5060
UUCCUUUCUUUAGCAUUUAGGUGA	chr12:69667921-69668192(+)$1	271	91	115	23.7690
GCUAGUUGAACUGAAGAUGCUGGC	chr3:37366602-37366869(+)$1	267	242	266	22.2104
AGACUUCAAGAUCAAAACAGUUGA	chr2:26321443-26321692(+)$1	249	91	115	22.6703
guacuuuuuaagaagccuauaggu	chr2:153568091-153568347(-)$1	256	93	117	21.5310
AGAGCUCUUUUAUAACUAAAGCAA	chr14:70238224-70238480(+)$1	256	216	240	21.3713
UAUGUUCAUUAGAAUUCUUUGCAU	chr6:31797671-31797957(+)$1	286	152	176	17.7765
aaagcugccaagaagaagagcaaa	chr9:139734671-139734912(+)$1	241	111	135	21.2899
AAUUCUCUCUGUCUUAUUGAAAUU	chr3:11357913-11358254(+)$1	341	15	39	23.3238
AAGAACUCAAAAAAUUAUGUUCAA	chr5:65374347-65374642(+)$1	295	104	128	23.3175
AUAUAUUGUCUGUCCAUAUGUAUU	chr12:46752294-46752612(-)$1	318	95	119	22.7667
gauuuuaaaauaaaagagaaaccc	chr18:9516857-9517167(+)$1	310	110	134	20.6316
AUUCAGUAUUAAAGGGGGGAGGGG	chr1:59247128-59247426(-)$1	298	7	31	22.4994
GCUAGAAGAAAUUUAUAUGCUGCC	chr15:93527468-93527730(+)$1	262	213	237	19.6278
GACUCUUGAACUUUAUGACGGAGU	chr5:158584772-158585100(-)$1	328	80	104	22.1166
AGUUGCAUAGUAUAGUUUUGCCAU	chr1:76260167-76260452(+)$1	285	183	207	21.6946
AUAUUAAAGAAAAUGUGUAACUUU	chr13:92003580-92003866(+)$1	286	148	172	21.8709
GGUGCUGAGAGAGAAAGAAGCAGC	chr1:111490554-111490815(-)$1	261	174	198	22.7293
cgugaagaucguugccaccuucca	chr19:6414389-6414623(-)$1	234	92	116	21.2866
UAAGGGUGAGAAACUGAAAUCCCA	chr8:101930882-101931120(-)$1	238	184	208	19.8233
CUGUCAAAAAAAUAUGCAUGUAUA	chr2:47387784-47388043(-)$1	259	221	245	21.9160
aauuggcaaaaauaauaccuaauu	chr6:99859075-99859356(-)$1	281	98	122	21.0777
GGUCAAACUAUAUAAACUCUGGCU	chr2:29169490-29169765(+)$1	275	172	196	18.9929
guauagaagauagaaaaauauaaa	chr11:65267300-65267524(+)$1	224	105	129	22.6703
GUGGAAUUACAUCCUCCUUUUCCU	chr3:142757693-142757904(+)$1	211	9	33	19.9311
ggagcuuuaaaauuugacuggccu	chr8:26182369-26182658(+)$1	289	25	49	23.6424
ggccgaggaagagaagaaggCCAA	chr9:136905107-136905426(-)$1	319	169	193	19.4969
GUAUGUUAAUACACACAUACAUAC	chr22:22115138-22115400(-)$1	262	24	48	22.2104
GCUUCUGGCCCAGAAAAGAGGAGC	chrX:64737892-64738188(-)$1	296	266	290	21.0777

#DB
(((((((...........))))))	chr17:30697162-30697484(+)$1	1	74	98	21.4668
..(((((...........))))).	chr12:76448726-76448970(-)$1	1	122	146	20.6529
(..(((...........)))).))	chr3:142761871-142762106(+)$1	1	151	175	22.2023
.(((((............))))).	chr7:91708335-91708692(+)$1	1	205	229	22.7065
((((((..............))))	chr2:153568147-153568406(-)$1	1	152	176	21.5310
((((((............))))))	chr14:21821545-21821791(-)$1	1	68	92	23.2608
((((((..............))))	chr7:1473944-1474313(-)$1	1	282	306	22.4586
(.((((............))))..	chr7:29685517-29685791(-)$1	1	211	235	22.2639
.(((((............))))).	chr17:73664500-73664813(+)$1	1	244	268	22.8291
.(((((..............))))	chr21:34931062-34931290(+)$1	1	137	161	21.9900
(((((.............))))))	chr4:6710115-6710377(-)$1	1	67	91	22.9759
.(((..............)))(((	chr10:70532661-70532958(+)$1	1	14	38	21.6667
(((((..............)))))	chr21:34931090-34931350(+)$1	1	110	134	21.8583
((.((..............)))))	chr13:111545288-111545560(-)$1	1	45	69	21.3599
..((((................))	chr2:44458314-44458692(+)$1	1	30	54	19.6299
((((((............))))))	chr10:12077037-12077324(-)$1	1	253	277	21.0777
((..((...........))....)	chr16:2867269-2867521(+)$1	1	81	105	20.7599
.(((((.............)))))	chr12:6879030-6879258(+)$1	1	191	215	21.5651
(((((((...........))).))	chr21:34932809-34933061(+)$1	1	144	168	21.5827
((((((..............))))	chr15:93445294-93445543(+)$1	1	50	74	22.4586
(((..(.............)..))	chr1:70716305-70716561(+)$1	1	153	177	22.3452
((...((...........))...)	chr14:73572803-73573092(+)$1	1	114	138	20.2873
.((((.............))))))	chr5:149114145-149114413(+)$1	1	67	91	22.5218
...(((...............)))	chr11:129991479-129991802(+)$1	1	204	228	18.1343
(((...............))))))	chr12:401895-402292(-)$1	1	53	77	17.8596
((((((............))))))	chr10:14888536-14888841(+)$1	1	98	122	22.2104
((.(((............))).))	chr21:34930178-34930424(+)$1	1	120	144	24.1182
((((.(...........).)))))	chr5:32601159-32601430(+)$1	1	109	133	22.0810
(..(((..............))).	chr9:131456196-131456417(+)$1	1	116	140	22.7163
((((((............))))))	chr7:138991982-138992318(+)$1	1	35	59	23.2608
(((...............))).))	chr21:33053584-33053894(-)$1	1	86	110	17.8927
(((((.............))))))	chr6:153291580-153291828(-)$1	1	79	103	23.0247
((((((..............))))	chr6:31797635-31797871(+)$1	1	45	69	22.5109
(..(((..............))).	chr9:131456217-131456421(+)$1	1	95	119	22.7163
.(((.(...........).)))..	chr22:40354372-40354641(+)$1	1	26	50	22.5060
..(((.............))).))	chr12:69667921-69668192(+)$1	1	91	115	23.7690
((((((............))))))	chr3:37366602-37366869(+)$1	1	242	266	22.2104
.((((.............))))..	chr2:26321443-26321692(+)$1	1	91	115	22.6703
((((((..............))))	chr2:153568091-153568347(-)$1	1	93	117	21.5310
)))(((.............)))..	chr14:70238224-70238480(+)$1	1	216	240	21.3713
.((((...............))))	chr6:31797671-31797957(+)$1	1	152	176	17.7765
...(((............)))...	chr9:139734671-139734912(+)$1	1	111	135	21.2899
(.(((.............))).))	chr3:11357913-11358254(+)$1	1	15	39	23.3238
..((((............))))..	chr5:65374347-65374642(+)$1	1	104	128	23.3175
(.((((.............)))).	chr12:46752294-46752612(-)$1	1	95	119	22.7667
(.((((...........)))).))	chr18:9516857-9517167(+)$1	1	110	134	20.6316
.(((..............))).))	chr1:59247128-59247426(-)$1	1	7	31	22.4994
((................))).))	chr15:93527468-93527730(+)$1	1	213	237	19.6278
((((((.............)))))	chr5:158584772-158585100(-)$1	1	80	104	22.1166
(((.(((...........))).))	chr1:76260167-76260452(+)$1	1	183	207	21.6946
(..(((...........)))..))	chr13:92003580-92003866(+)$1	1	148	172	21.8709
(.((((............)))).)	chr1:111490554-111490815(-)$1	1	174	198	22.7293
...((((...........))))..	chr19:6414389-6414623(-)$1	1	92	116	21.2866
)..(((..............))).	chr8:101930882-101931120(-)$1	1	184	208	19.8233
((((((............)).)))	chr2:47387784-47388043(-)$1	1	221	245	21.9160
((((((............))))))	chr6:99859075-99859356(-)$1	1	98	122	21.0777
((................))))))	chr2:29169490-29169765(+)$1	1	172	196	18.9929
.((((.............))))..	chr11:65267300-65267524(+)$1	1	105	129	22.6703
..((((.............)))).	chr3:142757693-142757904(+)$1	1	9	33	19.9311
((.(((.............)))))	chr8:26182369-26182658(+)$1	1	25	49	23.6424
((((..............)))).(	chr9:136905107-136905426(-)$1	1	169	193	19.4969
((((((............))))))	chr22:22115138-22115400(-)$1	1	24	48	22.2104
((((((............))))))	chrX:64737892-64738188(-)$1	1	266	290	21.0777

#PSSM
f : 0.14	g : 0.09	c : 0.09	d : 0.09	! : 0.06	i : 0.06	b : 0.06	" : 0.06	: : 0.04	e : 0.04	h : 0.04	$ : 0.04	= : 0.03	[ : 0.03	# : 0.03	a : 0.01	+ : 0.01	
f : 0.14	d : 0.12	e : 0.11	c : 0.11	! : 0.09	g : 0.09	[ : 0.07	h : 0.04	i : 0.04	" : 0.04	= : 0.03	: : 0.03	# : 0.01	+ : 0.01	
d : 0.23	e : 0.11	f : 0.11	c : 0.09	! : 0.07	g : 0.07	[ : 0.04	h : 0.04	i : 0.04	= : 0.03	" : 0.03	y : 0.03	# : 0.01	+ : 0.01	: : 0.01	
c : 0.23	d : 0.22	f : 0.11	e : 0.09	g : 0.07	h : 0.04	i : 0.04	! : 0.03	x : 0.03	y : 0.03	= : 0.01	b : 0.01	" : 0.01	[ : 0.01	
c : 0.22	d : 0.19	e : 0.09	f : 0.09	g : 0.07	w : 0.04	b : 0.04	h : 0.04	x : 0.03	[ : 0.03	i : 0.03	y : 0.03	= : 0.01	! : 0.01	" : 0.01	
c : 0.19	d : 0.12	v : 0.11	f : 0.09	e : 0.07	w : 0.07	g : 0.06	h : 0.04	b : 0.04	a : 0.04	x : 0.04	y : 0.03	= : 0.01	i : 0.01	
u : 0.25	w : 0.22	v : 0.22	t : 0.09	x : 0.06	y : 0.04	c : 0.03	= : 0.01	e : 0.01	b : 0.01	d : 0.01	
u : 0.25	w : 0.22	v : 0.22	t : 0.19	x : 0.06	y : 0.04	
u : 0.25	w : 0.22	v : 0.22	t : 0.19	x : 0.06	y : 0.04	
u : 0.25	w : 0.22	v : 0.22	t : 0.19	x : 0.06	y : 0.04	
u : 0.25	w : 0.22	v : 0.22	t : 0.19	x : 0.06	y : 0.04	
u : 0.25	w : 0.22	v : 0.22	t : 0.19	x : 0.06	y : 0.04	
u : 0.25	w : 0.22	v : 0.22	t : 0.19	x : 0.06	y : 0.04	
u : 0.25	w : 0.22	v : 0.22	t : 0.19	x : 0.06	y : 0.04	
u : 0.25	w : 0.22	v : 0.22	t : 0.19	x : 0.06	y : 0.04	
u : 0.25	w : 0.22	v : 0.22	t : 0.19	x : 0.06	y : 0.04	
u : 0.25	w : 0.22	v : 0.22	t : 0.19	x : 0.06	y : 0.04	
u : 0.25	w : 0.22	v : 0.22	t : 0.09	x : 0.06	y : 0.04	c : 0.03	a : 0.03	b : 0.01	d : 0.01	
c : 0.19	w : 0.17	d : 0.14	v : 0.11	f : 0.06	e : 0.04	g : 0.04	h : 0.04	b : 0.04	= : 0.03	x : 0.03	] : 0.03	y : 0.01	i : 0.01	
c : 0.23	d : 0.17	w : 0.14	e : 0.07	f : 0.07	g : 0.04	b : 0.04	h : 0.04	= : 0.03	x : 0.03	i : 0.03	y : 0.01	4 : 0.01	a : 0.01	
c : 0.25	d : 0.19	f : 0.11	e : 0.09	g : 0.07	h : 0.04	i : 0.04	= : 0.03	2 : 0.03	a : 0.01	b : 0.01	y : 0.01	4 : 0.01	3 : 0.01	x : 0.01	] : 0.01	
d : 0.17	] : 0.15	f : 0.14	c : 0.11	e : 0.09	g : 0.09	h : 0.04	i : 0.04	= : 0.03	2 : 0.03	y : 0.01	4 : 0.01	3 : 0.01	> : 0.01	
f : 0.15	e : 0.12	d : 0.12	c : 0.12	g : 0.09	3 : 0.09	i : 0.06	h : 0.04	= : 0.03	: : 0.03	b : 0.03	6 : 0.01	4 : 0.01	> : 0.01	] : 0.01	
f : 0.15	g : 0.11	e : 0.09	d : 0.09	c : 0.07	3 : 0.07	i : 0.06	2 : 0.04	h : 0.04	: : 0.04	b : 0.04	= : 0.03	6 : 0.03	] : 0.03	> : 0.01	D : 0.01	

#score	1363.8072024436499
#seq	63
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_CDS_m2_run2.txt

#BEAR
eewwwwwwwwwwwwwweeeee]	chr7:86817461-86817715(+)$1	254	58	80	21.1632
iiiiuuuuuuuuuuuuiiiiii	chr11:76183517-76183898(+)$1	381	71	93	22.8448
yyyyyyyyyyyyyyyygggggg	chr2:11338706-11338930(-)$1	224	17	39	20.2528
dddduuuuuuuuuuuudddd22	chr12:56997056-56997295(-)$1	239	151	173	22.5484
#cccuuuuuuuuuuuuccc333	chr19:57326579-57326792(-)$1	213	18	40	23.7312
[bbwwwwwwwwwwwwwwbb]bb	chr19:48975499-48975751(+)$1	252	111	133	20.2853
:cccuuuuuuuuuuuuccc:BB	chr14:21830855-21831113(-)$1	258	220	242	19.5371
[ddddtttttttttttdddd22	chr14:24606102-24606315(+)$1	213	9	31	21.8310
$cccwwwwwwwwwwwwwwccc6	chr19:11664947-11665270(-)$1	323	173	195	20.6487
yyyyyyyyyyyyyyyyccc333	chr1:93575723-93575983(+)$1	260	165	187	20.8767
eeevvvvvvvvvvvvveeeee>	chr11:22747789-22748064(+)$1	275	104	126	22.3887
dddvvvvvvvvvvvvvdddd]f	chr16:8891702-8891906(+)$1	204	22	44	22.3380
[abbuuuuuuuuuuuubb]a]d	chr17:79986879-79987156(+)$1	277	113	135	22.4374
ffffftttttttttttffffff	chr17:40812191-40812435(+)$1	244	168	190	21.5791
gggguuuuuuuuuuuugggggg	chr6:30135978-30136255(+)$1	277	250	272	22.8406
ddddvvvvvvvvvvvvvddddd	chr2:232320633-232320858(-)$1	225	93	115	21.6389
eeeettttttttttteeeee]a	chr14:21876482-21876706(-)$1	224	25	47	21.6695
gggggtttttttttttgggggg	chr1:38455455-38455761(-)$1	306	203	225	21.7463
dddduuuuuuuuuuuudddd]d	chr3:185404757-185404974(-)$1	217	156	178	22.6089
b[ccctttttttttttccc]bb	chr19:45560931-45561188(+)$1	257	126	148	21.7430
f[bbuuuuuuuuuuuubb]fff	chr1:110553826-110554087(+)$1	261	94	116	22.2795
:ccctttttttttttcccdddd	chr1:78428356-78428566(-)$1	210	38	60	20.7372
ffbbuuuuuuuuuuuubb]fff	chr12:122966005-122966263(-)$1	258	34	56	22.2205
[bbvvvvvvvvvvvvvbb]fff	chr20:47635328-47635542(+)$1	214	163	185	22.0204
eeevvvvvvvvvvvvveeeee3	chr17:4578481-4578744(-)$1	263	68	90	22.5860
dddduuuuuuuuuuuudddd99	chr1:23750954-23751190(-)$1	236	103	125	21.6621
ffffuuuuuuuuuuuuffffff	chr6:144165554-144165845(+)$1	291	183	205	22.5285
dddduuuuuuuuuuuudddd]c	chr20:17600907-17601114(-)$1	207	119	141	22.7670
yyyyyyyyyyyyyyyydddd55	chr19:10669942-10670231(-)$1	289	24	46	19.0271
ffffftttttttttttffffff	chr9:125835824-125836055(+)$1	231	184	206	21.5791
#ayyyyyyyyyyyyyyyya444	chr20:34309566-34309798(-)$1	232	26	48	20.3361
e[bbuuuuuuuuuuuubb]eee	chr6:31378957-31379210(+)$1	253	140	162	22.2387
eeevvvvvvvvvvvvveeeee3	chr19:6417902-6418170(-)$1	268	60	82	22.5860
[cccuuuuuuuuuuuucccddd	chr2:47233033-47233304(+)$1	271	22	44	23.0995
$ddddtttttttttttdddd55	chr12:113610203-113610465(-)$1	262	121	143	20.4329
ffffftttttttttttffffff	chr16:70389962-70390254(+)$1	292	52	74	21.5791
[cccuuuuuuuuuuuuccc]a3	chr14:102495877-102496098(+)$1	221	141	163	23.6541
ffffvvvvvvvvvvvvvfffff	chr12:50513771-50514084(+)$1	313	214	236	21.8907
:cccuuuuuuuuuuuuccc:::	chr10:102676587-102676849(+)$1	262	135	157	19.7605
yyyyyyyyyyyyyyyyccc22e	chr15:90145022-90145298(+)$1	276	73	95	20.1232
"cccuuuuuuuuuuuuccc]cc	chr8:37611404-37611729(+)$1	325	110	132	23.3072
iiivvvvvvvvvvvvviiiiii	chr22:24439415-24439639(+)$1	224	101	123	22.4078
eeeevvvvvvvvvvvvveeeee	chr1:78426068-78426281(-)$1	213	102	124	21.9730
eeeeettttttttttteeeee:	chr6:43322421-43322698(-)$1	277	66	88	21.0714
dddvvvvvvvvvvvvvdddd]i	chrX:128625824-128626060(-)$1	236	165	187	22.3353
[cccuuuuuuuuuuuucccccc	chr9:6893071-6893326(+)$1	255	40	62	23.3731
!!ccctttttttttttccc22d	chr10:63845489-63845748(+)$1	259	23	45	22.2013
===attttttttttta]=====	chr14:31588901-31589137(-)$1	236	26	48	22.3014
[bbvvvvvvvvvvvvvbb]ccc	chr16:70712096-70712362(-)$1	266	143	165	22.0063
ffffvvvvvvvvvvvvvfffff	chr2:170460470-170460715(+)$1	245	123	145	21.8907
eeeettttttttttteeeee22	chr6:11190443-11190686(-)$1	243	21	43	21.4489
eeeettttttttttteeeeecc	chr1:222833418-222833699(+)$1	281	66	88	21.4865
gggguuuuuuuuuuuugggggg	chr22:31850027-31850285(-)$1	258	205	227	22.8406
eeeeuuuuuuuuuuuueeeee:	chr17:38563038-38563254(-)$1	216	171	193	22.0385
hhccctttttttttttccc22h	chr2:136513029-136513341(+)$1	312	188	210	21.4690
dddduuuuuuuuuuuudddd77	chr9:117026534-117026737(+)$1	203	82	104	21.9135
eeeeuuuuuuuuuuuueeeee:	chr11:34978926-34979234(+)$1	308	81	103	22.0385
ddddvvvvvvvvvvvvvdddd:	chr4:186567666-186567973(-)$1	307	197	219	21.0649
ffffuuuuuuuuuuuuffffff	chr9:20789362-20789697(+)$1	335	174	196	22.5285
ffffftttttttttttffffff	chrX:151130945-151131216(-)$1	271	45	67	21.5791
[bbvvvvvvvvvvvvvbb]fff	chr2:26332570-26332827(+)$1	257	26	48	22.0204
ffffwwwwwwwwwwwwwwffff	chr20:35862323-35862528(+)$1	205	38	60	20.5553
iiiiitttttttttttiiiiii	chr17:8161031-8161258(+)$1	227	89	111	21.5955

#otherMatches

#Seq PSSM
GCAUGUUCAGAUAAGAGUUGCC	chr7:86817461-86817715(+)$1	254	58	80	21.1632
CUUAUUUUUUAUUCCUUAGGUU	chr11:76183517-76183898(+)$1	381	71	93	22.8448
UUUCAUUUCUUAGCUUGAGGAA	chr2:11338706-11338930(-)$1	224	17	39	20.2528
AGGUAUUGUGCUUCUAACCUCC	chr12:56997056-56997295(-)$1	239	151	173	22.5484
UACUGACCCUCAAACAAGUUAC	chr19:57326579-57326792(-)$1	213	18	40	23.7312
GCUGCAGAACACACCCGAGGAG	chr19:48975499-48975751(+)$1	252	111	133	20.2853
UUGCCAUAAAUAAUCUGCAUUC	chr14:21830855-21831113(-)$1	258	220	242	19.5371
GCCCUACAUAACCCUAAGGGAA	chr14:24606102-24606315(+)$1	213	9	31	21.8310
CCAGUUCACCUGCCCCUUCUGC	chr19:11664947-11665270(-)$1	323	173	195	20.6487
ACAUAAAGCCAAAAAGCCAGCA	chr1:93575723-93575983(+)$1	260	165	187	20.8767
UGCCAGAGACAAUACAGCAAAU	chr11:22747789-22748064(+)$1	275	104	126	22.3887
CUAGAAACUGGGGACAUGGCAG	chr16:8891702-8891906(+)$1	204	22	44	22.3380
GAGGAGAGUGAGAAGGCCAUGC	chr17:79986879-79987156(+)$1	277	113	135	22.4374
CUUUGAUAUUCCCAUCCAGAGG	chr17:40812191-40812435(+)$1	244	168	190	21.5791
UGAGGAAGUCACCCGGCUUGGA	chr6:30135978-30136255(+)$1	277	250	272	22.8406
UCGGGCAAGGAUAGUUACUGAC	chr2:232320633-232320858(-)$1	225	93	115	21.6389
GGGCAAAACUAUUCAGUCCAUU	chr14:21876482-21876706(-)$1	224	25	47	21.6695
UCACCAAGAAGUCCACGGUGAG	chr1:38455455-38455761(-)$1	306	203	225	21.7463
ACUCAACAGAGAAAAAGAGUAG	chr3:185404757-185404974(-)$1	217	156	178	22.6089
UGGCCAAGGUAGAGAAGGCGGC	chr19:45560931-45561188(+)$1	257	126	148	21.7430
UGUGAAGAACAUCAAGCAGGCA	chr1:110553826-110554087(+)$1	261	94	116	22.2795
UGAAGUUAUUUACAAUUCGUGG	chr1:78428356-78428566(-)$1	210	38	60	20.7372
UCCUUUAUUUUUACUUAGUGAG	chr12:122966005-122966263(-)$1	258	34	56	22.2205
CUCUAACCCAACAGAUGACAGC	chr20:47635328-47635542(+)$1	214	163	185	22.0204
CUGCCCCUUUUUUCUCCAGAGC	chr17:4578481-4578744(-)$1	263	68	90	22.5860
CUGGAGAAGAUGGUGGCCAGGA	chr1:23750954-23751190(-)$1	236	103	125	21.6621
UAUUGCCCACACAAAAAGUAGG	chr6:144165554-144165845(+)$1	291	183	205	22.5285
UCUCGAAGAGAUUGUAGAGAAG	chr20:17600907-17601114(-)$1	207	119	141	22.7670
AGGAGAAAGCAAAGAAGCAGGA	chr19:10669942-10670231(-)$1	289	24	46	19.0271
CACCAAAUUGAGGAAAUGGUGC	chr9:125835824-125836055(+)$1	231	184	206	21.5791
GCAAACAAUUUACAAAAGGGAA	chr20:34309566-34309798(-)$1	232	26	48	20.3361
GGCGAUAUCUAGAAUCCGGCGU	chr6:31378957-31379210(+)$1	253	140	162	22.2387
UGCUUCCUGUGUGUUUGCAGCA	chr19:6417902-6418170(-)$1	268	60	82	22.5860
CACAGGCAACUCGAGAUGUGGU	chr2:47233033-47233304(+)$1	271	22	44	23.0995
UGCGCCCACAUCUACAGUGCCC	chr12:113610203-113610465(-)$1	262	121	143	20.4329
AGGACAGAGCUGCCCAGUCCUU	chr16:70389962-70390254(+)$1	292	52	74	21.5791
GCUCAGGAAGAUCAAAGAGACA	chr14:102495877-102496098(+)$1	221	141	163	23.6541
UCAGGAAUCAUGUAGAACUGGG	chr12:50513771-50514084(+)$1	313	214	236	21.8907
AUGCAGACUCCAAAAAGCAGAC	chr10:102676587-102676849(+)$1	262	135	157	19.7605
AAUCACCACUUCUUUCUGUGCC	chr15:90145022-90145298(+)$1	276	73	95	20.1232
UUCCUAACAUGUUCAUGGACUC	chr8:37611404-37611729(+)$1	325	110	132	23.3072
CUGUCCUGUACACCCUCAGUGA	chr22:24439415-24439639(+)$1	224	101	123	22.4078
GCCCAGUAAAUCCUUUAGGGCC	chr1:78426068-78426281(-)$1	213	102	124	21.9730
CCUGUACCUGAACCACACAGGA	chr6:43322421-43322698(-)$1	277	66	88	21.0714
AGAAAUUUAUCAUAGCUCUGAA	chrX:128625824-128626060(-)$1	236	165	187	22.3353
AGAAUUCAUGAUCACUUUCCCA	chr9:6893071-6893326(+)$1	255	40	62	23.3731
CCUCCAAUCAAACCUCGGAAAC	chr10:63845489-63845748(+)$1	259	23	45	22.2013
CAUCUUAUUAUGUUUGUGUGUG	chr14:31588901-31589137(-)$1	236	26	48	22.3014
GCCGGGCGCUGAUCGAGGAGCG	chr16:70712096-70712362(-)$1	266	143	165	22.0063
GCCAUUAACAAUCAACCUGGUA	chr2:170460470-170460715(+)$1	245	123	145	21.8907
CAUCCUCCACAACAAGAUGAAG	chr6:11190443-11190686(-)$1	243	21	43	21.4489
UCUUAAAAUGCUAACAAGAUGC	chr1:222833418-222833699(+)$1	281	66	88	21.4865
UUUUUCCCACCACAAUAAAAGG	chr22:31850027-31850285(-)$1	258	205	227	22.8406
GUACGCUAAUUUCUAAGUACCA	chr17:38563038-38563254(-)$1	216	171	193	22.0385
UGAGAUACCACCCACUUCUGAU	chr2:136513029-136513341(+)$1	312	188	210	21.4690
CCCUUUUUCCUAUUCCAGGGCC	chr9:117026534-117026737(+)$1	203	82	104	21.9135
UGUUGAAAUUCCCAAAGACGUA	chr11:34978926-34979234(+)$1	308	81	103	22.0385
CAGGGCUCCCCAAUAAACCUGA	chr4:186567666-186567973(-)$1	307	197	219	21.0649
AAGACAAAGGACAAAAUCUUCA	chr9:20789362-20789697(+)$1	335	174	196	22.5285
UGAAUGUCCUUUUUCUGUUCAU	chrX:151130945-151131216(-)$1	271	45	67	21.5791
AUCAAAAUGCUUAAUAGAAAUU	chr2:26332570-26332827(+)$1	257	26	48	22.0204
CUUGUGUUGCUUCCCUUUUAAG	chr20:35862323-35862528(+)$1	205	38	60	20.5553
CCAGGUUACAAUCUGCCCUGGG	chr17:8161031-8161258(+)$1	227	89	111	21.5955

#DB
((..............))))).	chr7:86817461-86817715(+)$1	1	58	80	21.1632
((((............))))))	chr11:76183517-76183898(+)$1	1	71	93	22.8448
................))))))	chr2:11338706-11338930(-)$1	1	17	39	20.2528
((((............))))..	chr12:56997056-56997295(-)$1	1	151	173	22.5484
.(((............)))...	chr19:57326579-57326792(-)$1	1	18	40	23.7312
.((..............)).))	chr19:48975499-48975751(+)$1	1	111	133	20.2853
.(((............))).))	chr14:21830855-21831113(-)$1	1	220	242	19.5371
.((((...........))))..	chr14:24606102-24606315(+)$1	1	9	31	21.8310
.(((..............))).	chr19:11664947-11665270(-)$1	1	173	195	20.6487
................)))...	chr1:93575723-93575983(+)$1	1	165	187	20.8767
(((.............))))).	chr11:22747789-22748064(+)$1	1	104	126	22.3887
(((.............)))).)	chr16:8891702-8891906(+)$1	1	22	44	22.3380
.(((............)).).)	chr17:79986879-79987156(+)$1	1	113	135	22.4374
(((((...........))))))	chr17:40812191-40812435(+)$1	1	168	190	21.5791
((((............))))))	chr6:30135978-30136255(+)$1	1	250	272	22.8406
((((.............))))(	chr2:232320633-232320858(-)$1	1	93	115	21.6389
((((...........))))).)	chr14:21876482-21876706(-)$1	1	25	47	21.6695
(((((...........))))))	chr1:38455455-38455761(-)$1	1	203	225	21.7463
((((............)))).)	chr3:185404757-185404974(-)$1	1	156	178	22.6089
(.(((...........))).))	chr19:45560931-45561188(+)$1	1	126	148	21.7430
(.((............)).)))	chr1:110553826-110554087(+)$1	1	94	116	22.2795
.(((...........)))((((	chr1:78428356-78428566(-)$1	1	38	60	20.7372
((((............)).)))	chr12:122966005-122966263(-)$1	1	34	56	22.2205
.((.............)).)))	chr20:47635328-47635542(+)$1	1	163	185	22.0204
(((.............))))).	chr17:4578481-4578744(-)$1	1	68	90	22.5860
((((............))))..	chr1:23750954-23751190(-)$1	1	103	125	21.6621
((((............))))))	chr6:144165554-144165845(+)$1	1	183	205	22.5285
((((............)))).)	chr20:17600907-17601114(-)$1	1	119	141	22.7670
................))))..	chr19:10669942-10670231(-)$1	1	24	46	19.0271
(((((...........))))))	chr9:125835824-125836055(+)$1	1	184	206	21.5791
.(................)...	chr20:34309566-34309798(-)$1	1	26	48	20.3361
(.((............)).)))	chr6:31378957-31379210(+)$1	1	140	162	22.2387
(((.............))))).	chr19:6417902-6418170(-)$1	1	60	82	22.5860
.(((............))))))	chr2:47233033-47233304(+)$1	1	22	44	23.0995
.((((...........))))..	chr12:113610203-113610465(-)$1	1	121	143	20.4329
(((((...........))))))	chr16:70389962-70390254(+)$1	1	52	74	21.5791
.(((............))).).	chr14:102495877-102496098(+)$1	1	141	163	23.6541
((((.............)))))	chr12:50513771-50514084(+)$1	1	214	236	21.8907
.(((............)))...	chr10:102676587-102676849(+)$1	1	135	157	19.7605
................)))..)	chr15:90145022-90145298(+)$1	1	73	95	20.1232
.(((............))).))	chr8:37611404-37611729(+)$1	1	110	132	23.3072
(((.............))))))	chr22:24439415-24439639(+)$1	1	101	123	22.4078
((((.............)))))	chr1:78426068-78426281(-)$1	1	102	124	21.9730
(((((...........))))).	chr6:43322421-43322698(-)$1	1	66	88	21.0714
(((.............)))).)	chrX:128625824-128626060(-)$1	1	165	187	22.3353
.(((............))))))	chr9:6893071-6893326(+)$1	1	40	62	23.3731
..(((...........)))..)	chr10:63845489-63845748(+)$1	1	23	45	22.2013
((((...........).)))))	chr14:31588901-31589137(-)$1	1	26	48	22.3014
.((.............)).)))	chr16:70712096-70712362(-)$1	1	143	165	22.0063
((((.............)))))	chr2:170460470-170460715(+)$1	1	123	145	21.8907
((((...........)))))..	chr6:11190443-11190686(-)$1	1	21	43	21.4489
((((...........)))))))	chr1:222833418-222833699(+)$1	1	66	88	21.4865
((((............))))))	chr22:31850027-31850285(-)$1	1	205	227	22.8406
((((............))))).	chr17:38563038-38563254(-)$1	1	171	193	22.0385
(((((...........)))..)	chr2:136513029-136513341(+)$1	1	188	210	21.4690
((((............))))..	chr9:117026534-117026737(+)$1	1	82	104	21.9135
((((............))))).	chr11:34978926-34979234(+)$1	1	81	103	22.0385
((((.............)))).	chr4:186567666-186567973(-)$1	1	197	219	21.0649
((((............))))))	chr9:20789362-20789697(+)$1	1	174	196	22.5285
(((((...........))))))	chrX:151130945-151131216(-)$1	1	45	67	21.5791
.((.............)).)))	chr2:26332570-26332827(+)$1	1	26	48	22.0204
((((..............))))	chr20:35862323-35862528(+)$1	1	38	60	20.5553
(((((...........))))))	chr17:8161031-8161258(+)$1	1	89	111	21.5955

#PSSM
e : 0.19	f : 0.17	d : 0.14	[ : 0.14	y : 0.06	i : 0.04	: : 0.04	g : 0.04	# : 0.03	$ : 0.03	b : 0.01	" : 0.01	! : 0.01	= : 0.01	h : 0.01	
e : 0.17	d : 0.17	f : 0.15	c : 0.14	y : 0.06	b : 0.06	i : 0.04	g : 0.04	[ : 0.04	a : 0.03	! : 0.01	= : 0.01	h : 0.01	
c : 0.19	d : 0.17	e : 0.15	f : 0.14	b : 0.12	y : 0.07	i : 0.04	g : 0.04	w : 0.01	= : 0.01	
c : 0.19	d : 0.14	v : 0.14	f : 0.14	e : 0.11	y : 0.07	b : 0.06	g : 0.04	w : 0.03	i : 0.03	a : 0.01	
u : 0.36	v : 0.22	y : 0.07	t : 0.07	w : 0.06	f : 0.06	c : 0.04	d : 0.03	g : 0.01	e : 0.01	i : 0.01	
u : 0.36	t : 0.26	v : 0.22	y : 0.07	w : 0.06	
u : 0.36	t : 0.26	v : 0.22	y : 0.07	w : 0.06	
u : 0.36	t : 0.26	v : 0.22	y : 0.07	w : 0.06	
u : 0.36	t : 0.26	v : 0.22	y : 0.07	w : 0.06	
u : 0.36	t : 0.26	v : 0.22	y : 0.07	w : 0.06	
u : 0.36	t : 0.26	v : 0.22	y : 0.07	w : 0.06	
u : 0.36	t : 0.26	v : 0.22	y : 0.07	w : 0.06	
u : 0.36	t : 0.26	v : 0.22	y : 0.07	w : 0.06	
u : 0.36	t : 0.26	v : 0.22	y : 0.07	w : 0.06	
u : 0.36	t : 0.26	v : 0.22	y : 0.07	w : 0.06	
u : 0.36	v : 0.22	t : 0.19	y : 0.07	w : 0.06	e : 0.04	c : 0.01	a : 0.01	
c : 0.20	e : 0.15	d : 0.15	b : 0.11	f : 0.09	v : 0.07	g : 0.06	i : 0.04	w : 0.04	y : 0.01	] : 0.01	
c : 0.20	d : 0.19	e : 0.17	b : 0.12	f : 0.12	g : 0.06	i : 0.04	w : 0.03	y : 0.01	= : 0.01	
d : 0.20	c : 0.20	e : 0.17	f : 0.14	] : 0.11	g : 0.06	i : 0.04	b : 0.01	a : 0.01	= : 0.01	
d : 0.22	f : 0.20	e : 0.19	g : 0.06	] : 0.06	i : 0.04	c : 0.04	2 : 0.04	3 : 0.03	: : 0.03	a : 0.01	4 : 0.01	= : 0.01	
f : 0.20	e : 0.14	2 : 0.09	] : 0.09	c : 0.07	g : 0.06	d : 0.06	i : 0.04	3 : 0.03	b : 0.03	5 : 0.03	B : 0.01	9 : 0.01	4 : 0.01	a : 0.01	: : 0.01	= : 0.01	7 : 0.01	
f : 0.22	d : 0.09	3 : 0.07	c : 0.07	: : 0.07	i : 0.06	g : 0.06	2 : 0.04	e : 0.04	b : 0.03	5 : 0.03	] : 0.01	B : 0.01	6 : 0.01	> : 0.01	a : 0.01	9 : 0.01	4 : 0.01	= : 0.01	h : 0.01	7 : 0.01	

#score	1373.2675190453342
#seq	63
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF560CDL_PCBP2_UTR_m2_run1.txt

#BEAR
c!!cccuuuuuuuuuuuuccc22c	chr20:43058548-43058815(+)$1	267	102	126	22.4054
ee!!bbuuuuuuuuuuuubb22ee	chr6:24719014-24719265(-)$1	251	75	99	21.3415
ffffffvvvvvvvvvvvvvfffff	chr10:101152808-101153129(+)$1	321	4	28	21.7816
:eeeeeyyyyyyyyyyyyyyyyee	chr20:57485926-57486135(+)$1	209	149	173	21.1666
"a[cccuuuuuuuuuuuuccca22	chr10:75257479-75257773(-)$1	294	243	267	22.4680
ffffffyyyyyyyyyyyyyyyyff	chr6:32136734-32136962(-)$1	228	167	191	20.6713
bb[cccvvvvvvvvvvvvvcccbb	chr11:116703595-116703857(+)$1	262	2	26	22.6174
bb!!ddddtttttttttttdddd2	chr5:176963489-176963774(-)$1	285	233	257	20.7932
::ddddwwwwwwwwwwwwwwdddd	chr12:56388090-56388378(+)$1	288	215	239	21.6269
ffffffvvvvvvvvvvvvvfffff	chr19:14203526-14203821(-)$1	295	260	284	21.7816
"""cccuuuuuuuuuuuuccc333	chr10:102732380-102732668(+)$1	288	206	230	22.8662
ccca[bbuuuuuuuuuuuubb]a]	chr16:28846322-28846598(+)$1	276	247	271	21.4518
d[ddddwwwwwwwwwwwwwwdddd	chr17:29687495-29687770(+)$1	275	243	267	22.7638
::eeeeeuuuuuuuuuuuueeeee	chrX:133930550-133930818(-)$1	268	11	35	21.7830
bb[cccwwwwwwwwwwwwwwccc]	chr7:767072-767418(+)$1	346	17	41	22.5774
#cccddddtttttttttttdddd2	chr3:38454855-38455109(+)$1	254	204	228	20.9195
bb[bbyyyyyyyyyyyyyyyybb]	chr14:76117451-76117668(-)$1	217	135	159	20.0648
f[ddddwwwwwwwwwwwwwwdddd	chr16:57417255-57417510(+)$1	255	68	92	22.8187
###eeeeettttttttttteeeee	chr8:48685684-48685962(-)$1	278	10	34	21.4233
e!!cccuuuuuuuuuuuuccc22e	chr1:236140879-236141141(-)$1	262	214	238	22.3981
::ddddvvvvvvvvvvvvvddddb	chr1:156209532-156209847(+)$1	315	65	89	21.9165
ddddddduuuuuuuuuuuudddd:	chr11:2160091-2160301(-)$1	210	95	119	21.7010
::ddddvvvvvvvvvvvvvdddd:	chr19:45323447-45323661(+)$1	214	72	96	21.3088
=======uuuuuuuuuuuu=====	chr17:7215370-7215637(+)$1	267	231	255	22.7324
e!!ccctttttttttttccc22ee	chrX:38547190-38547481(+)$1	291	85	109	20.6004
c:eeeeeuuuuuuuuuuuueeeee	chr16:28915528-28915796(+)$1	268	89	113	22.3456
gg!!bbuuuuuuuuuuuubb22gg	chr19:42751649-42751899(-)$1	250	13	37	21.3214
""ddddwwwwwwwwwwwwwwdddd	chr19:4046985-4047226(-)$1	241	134	158	23.1586
::ddddwwwwwwwwwwwwwwdddd	chr20:43954826-43955038(-)$1	212	87	111	21.6269
!eeeeexxxxxxxxxxxxxxxeee	chr12:6776384-6776682(-)$1	298	190	214	19.2094
=======uuuuuuuuuuuu=====	chr17:7215437-7215650(+)$1	213	164	188	22.7324
::ddddvvvvvvvvvvvvvdddd:	chr19:45323510-45323724(+)$1	214	9	33	21.3088
::ddddvvvvvvvvvvvvvdddd:	chr19:45323334-45323582(+)$1	248	185	209	21.3088
::eeeeeuuuuuuuuuuuueeeee	chr11:119534481-119534736(-)$1	255	57	81	21.7830
ggggggwwwwwwwwwwwwwwgggg	chr12:57504874-57505141(-)$1	267	48	72	22.3955
[eeeeexxxxxxxxxxxxxxxeee	chr11:838476-838752(+)$1	276	201	225	19.1506
$$eeeeeuuuuuuuuuuuueeeee	chr1:2240991-2241239(+)$1	248	116	140	22.9845
$$ddddwwwwwwwwwwwwwwdddd	chr19:56671716-56671990(+)$1	274	60	84	22.8284
:eeeeevvvvvvvvvvvvveeeee	chr17:40946780-40947158(+)$1	378	112	136	22.8067
!!ddddxxxxxxxxxxxxxxxddd	chr19:48894623-48894905(-)$1	282	139	163	19.2654
iiiiiivvvvvvvvvvvvviiiii	chr11:64532538-64532819(-)$1	281	204	228	22.8003
eeeeewwwwwwwwwwwwwweeeee	chrX:48325656-48325931(-)$1	275	163	187	22.1620
$$$$cccuuuuuuuuuuuuccc66	chrX:47074319-47074609(+)$1	290	33	57	21.1469
=======uuuuuuuuuuuu=====	chr5:176524903-176525178(+)$1	275	44	68	22.7324
ee[cccuuuuuuuuuuuuccceee	chr10:60936359-60936688(+)$1	329	283	307	22.7326
"""cccyyyyyyyyyyyyyyyycc	chr1:150238460-150238718(-)$1	258	95	119	21.8477
ffff[avvvvvvvvvvvvva]fff	chr13:100153705-100153927(+)$1	222	47	71	22.2023
::ddddvvvvvvvvvvvvvddddE	chr2:28635603-28635881(+)$1	278	164	188	21.2092
Deeeeevvvvvvvvvvvvveeeee	chr16:67471844-67472119(-)$1	275	232	256	22.5061
"""cccyyyyyyyyyyyyyyyycc	chr16:87733897-87734236(-)$1	339	157	181	21.8477
cc[ddddtttttttttttddddcc	chr8:144989417-144989724(-)$1	307	155	179	21.2219
::ddddwwwwwwwwwwwwwwdddd	chr17:4637017-4637263(-)$1	246	196	220	21.6269
ffffffuuuuuuuuuuuuffffff	chr20:48698602-48698852(-)$1	250	83	107	20.8975
ddd[bbyyyyyyyyyyyyyyyybb	chr20:32667855-32668100(+)$1	245	181	205	20.1075
eeeddddtttttttttttdddd]e	chr6:43479810-43480090(-)$1	280	53	77	20.9909
ggggggvvvvvvvvvvvvvggggg	chr6:42906630-42906914(+)$1	284	6	30	22.7885
%%ddddvvvvvvvvvvvvvdddd2	chr11:45826779-45827191(+)$1	412	144	168	22.4886
ff[eeeeettttttttttteeeee	chr11:2153577-2153788(-)$1	211	99	123	21.0729
ggggggvvvvvvvvvvvvvggggg	chr6:30037602-30037834(+)$1	232	44	68	22.7885
fff[bbyyyyyyyyyyyyyyyybb	chr19:1925369-1925639(+)$1	270	52	76	20.1528
ff[eeeeettttttttttteeeee	chr11:2153588-2153795(-)$1	207	106	130	21.0729
[cccddddtttttttttttdddd9	chr2:85548044-85548254(-)$1	210	125	149	20.4146
[eeeeewwwwwwwwwwwwwweeee	chr5:73925501-73925776(-)$1	275	145	169	23.0116
eeeeeevvvvvvvvvvvvveeeee	chr19:6677790-6678010(-)$1	220	102	126	23.2471
:eeeeeyyyyyyyyyyyyyyyyee	chr16:31085696-31086036(+)$1	340	212	236	21.1666
ffffffwwwwwwwwwwwwwwffff	chr2:242694658-242694933(+)$1	275	40	64	21.4656
iiiiiiiuuuuuuuuuuuuiiiii	chr7:100212747-100213058(+)$1	311	236	260	22.2444
ggggggvvvvvvvvvvvvvggggg	chr19:56128296-56128533(+)$1	237	139	163	22.7885

#otherMatches

#Seq PSSM
CCAGCUCCCUUCUUCCCUAGCCUG	chr20:43058548-43058815(+)$1	267	102	126	22.4054
AGUUAGUUAUUUUCUCCUCUUUCU	chr6:24719014-24719265(-)$1	251	75	99	21.3415
UCAGAAUAACUAUCUCCCUUUCUG	chr10:101152808-101153129(+)$1	321	4	28	21.7816
CGGCCUACAGAAAAAGGAAAAAAG	chr20:57485926-57486135(+)$1	209	149	173	21.1666
UGUGCCCUCCAAACCUUAGGCCUA	chr10:75257479-75257773(-)$1	294	243	267	22.4680
AGUUGCCUCCCCCUCAUCUCCAGU	chr6:32136734-32136962(-)$1	228	167	191	20.6713
UGAGACCUCAAUACCCCAAGUCCA	chr11:116703595-116703857(+)$1	262	2	26	22.6174
CACUGCCCCCCACACUCCAGGGCC	chr5:176963489-176963774(-)$1	285	233	257	20.7932
UCCCAGCUCAUUUUUUUCUUCUGG	chr12:56388090-56388378(+)$1	288	215	239	21.6269
GGGGCUCACGCUUAACUCCAGCCC	chr19:14203526-14203821(-)$1	295	260	284	21.7816
ACUGUGCUUCCCAUUCCCCGCCCC	chr10:102732380-102732668(+)$1	288	206	230	22.8662
GCACUGGUUCUCCCUCUUUCCUGC	chr16:28846322-28846598(+)$1	276	247	271	21.4518
UUAUAUGACUUUGAGCAACAAUAU	chr17:29687495-29687770(+)$1	275	243	267	22.7638
UAGCAGCAUGAGUUCCGCCGCUGC	chrX:133930550-133930818(-)$1	268	11	35	21.7830
caugcgccgcuucccccacccgcc	chr7:767072-767418(+)$1	346	17	41	22.5774
CGCAGGGccucucuuacuugcccc	chr3:38454855-38455109(+)$1	254	204	228	20.9195
CAUGUGAACUAUGAAACUUAAACC	chr14:76117451-76117668(-)$1	217	135	159	20.0648
GCCAGGCCCUCUGCCCACUCCCUG	chr16:57417255-57417510(+)$1	255	68	92	22.8187
UCCAGGAGAAUAAAAGAAAUUCCU	chr8:48685684-48685962(-)$1	278	10	34	21.4233
AGACAGACUUAUACACCCCUGAGU	chr1:236140879-236141141(-)$1	262	214	238	22.3981
UUUAGAUUCCUCUGUUUCUUCUAC	chr1:156209532-156209847(+)$1	315	65	89	21.9165
ACCGCCUGUCCCCCUCCCGAGGCC	chr11:2160091-2160301(-)$1	210	95	119	21.7010
ACCUAGCCAUUUcccaacccuagu	chr19:45323447-45323661(+)$1	214	72	96	21.3088
CUCCCCAAACCCCUUUAGAUgggg	chr17:7215370-7215637(+)$1	267	231	255	22.7324
ACAGUACAUAAUACACUUGCCCUG	chrX:38547190-38547481(+)$1	291	85	109	20.6004
GUCAUGUGUCUGUUUAUAAACAUG	chr16:28915528-28915796(+)$1	268	89	113	22.3456
GUGCCCUGAAACCAAACUGGAAGC	chr19:42751649-42751899(-)$1	250	13	37	21.3214
CUGAGACACAAACCUAUUUAUUUC	chr19:4046985-4047226(-)$1	241	134	158	23.1586
CAGUUUUUUUUUUAUACUUUAAAC	chr20:43954826-43955038(-)$1	212	87	111	21.6269
CCUCCCAGAUAACAGAGAAAAGGG	chr12:6776384-6776682(-)$1	298	190	214	19.2094
CUCCCCAAACCCCUUUAGAUgggg	chr17:7215437-7215650(+)$1	213	164	188	22.7324
ACCUAGCCAUUUcccaacccuagu	chr19:45323510-45323724(+)$1	214	9	33	21.3088
ACCUAGCCAUUUcccaacccuagu	chr19:45323334-45323582(+)$1	248	185	209	21.3088
ACGUGCACACACACACACAUGCAC	chr11:119534481-119534736(-)$1	255	57	81	21.7830
uguguguguguguguguguguaug	chr12:57504874-57505141(-)$1	267	48	72	22.3955
caccaccacccgaaaugccacgug	chr11:838476-838752(+)$1	276	201	225	19.1506
cccccaccuccuccucccuguggg	chr1:2240991-2241239(+)$1	248	116	140	22.9845
ccucagccccccccuucucccuga	chr19:56671716-56671990(+)$1	274	60	84	22.8284
CCCUGGAACCCCCAUUUCCCCAGG	chr17:40946780-40947158(+)$1	378	112	136	22.8067
CCCUCCCAAAGUCCCCUCCCCGGA	chr19:48894623-48894905(-)$1	282	139	163	19.2654
UUGUGGGUUUUUCAAGGUGCCAUA	chr11:64532538-64532819(-)$1	281	204	228	22.8003
GCAGCGUCUCCCCUCCCCAGCUGU	chrX:48325656-48325931(-)$1	275	163	187	22.1620
CCCUUGUCCACCCCUCUCCACACC	chrX:47074319-47074609(+)$1	290	33	57	21.1469
CUCCUGCCUCCCAAUACCAGCAGG	chr5:176524903-176525178(+)$1	275	44	68	22.7324
CAACAGCCCCACCAGCCCCUGUGA	chr10:60936359-60936688(+)$1	329	283	307	22.7326
CCAAGACUCACCUCCCUUCCCCUC	chr1:150238460-150238718(-)$1	258	95	119	21.8477
GCCGGCUUCCUUUAUCUCUGGCGG	chr13:100153705-100153927(+)$1	222	47	71	22.2023
CUUGGUUUUUAUCAAAUUUGCCAU	chr2:28635603-28635881(+)$1	278	164	188	21.2092
CCAUGACCCCUAACUUCCCUCGUG	chr16:67471844-67472119(-)$1	275	232	256	22.5061
cccuccucccuccGCCUUAUCUGG	chr16:87733897-87734236(-)$1	339	157	181	21.8477
GGAGCCCCAGCCCCCUUUGGGCCC	chr8:144989417-144989724(-)$1	307	155	179	21.2219
CAGUUGUUCCUCCCCCACCUCAGC	chr17:4637017-4637263(-)$1	246	196	220	21.6269
GUGAUGCCCCUUCCAAACCAUCAU	chr20:48698602-48698852(-)$1	250	83	107	20.8975
GGACCCUGACAAUAAAGAGAUUGG	chr20:32667855-32668100(+)$1	245	181	205	20.1075
GGAGGGCCCCAACAUCCCGCCCAU	chr6:43479810-43480090(-)$1	280	53	77	20.9909
CUUGGCUGUGCCCUCUUCUGCCAA	chr6:42906630-42906914(+)$1	284	6	30	22.7885
ucggcaccucuucccacucugcca	chr11:45826779-45827191(+)$1	412	144	168	22.4886
UUUGAGUCAAAUUGGCCUGGACUU	chr11:2153577-2153788(-)$1	211	99	123	21.0729
AGAGGUCCUUGUCAUUCUCACCUC	chr6:30037602-30037834(+)$1	232	44	68	22.7885
CCCGUCAAAUCUGUGCCUUAUGGA	chr19:1925369-1925639(+)$1	270	52	76	20.1528
UUUGAGUCAAAUUGGCCUGGACUU	chr11:2153588-2153795(-)$1	207	106	130	21.0729
UGCUCAACUUCUCCAGUAUGUUGC	chr2:85548044-85548254(-)$1	210	125	149	20.4146
UGGUUUAAAUAUGAAUGAACAAAC	chr5:73925501-73925776(-)$1	275	145	169	23.0116
UGGGUGCCCCAACUGACCACACCC	chr19:6677790-6678010(-)$1	220	102	126	23.2471
AGCCCCCCGACAGCCACCCCUUGG	chr16:31085696-31086036(+)$1	340	212	236	21.1666
CAUGUCCCUGCCUCCCACCCGACA	chr2:242694658-242694933(+)$1	275	40	64	21.4656
CAUUUUUAAAAUGAUAAUCAGAAA	chr7:100212747-100213058(+)$1	311	236	260	22.2444
UCUGCCCCCAGUAAGUUUUGGCGG	chr19:56128296-56128533(+)$1	237	139	163	22.7885

#DB
(..(((............)))..)	chr20:43058548-43058815(+)$1	1	102	126	22.4054
((..((............))..))	chr6:24719014-24719265(-)$1	1	75	99	21.3415
((((((.............)))))	chr10:101152808-101153129(+)$1	1	4	28	21.7816
.(((((................))	chr20:57485926-57486135(+)$1	1	149	173	21.1666
.(.(((............))))..	chr10:75257479-75257773(-)$1	1	243	267	22.4680
((((((................))	chr6:32136734-32136962(-)$1	1	167	191	20.6713
((.(((.............)))))	chr11:116703595-116703857(+)$1	1	2	26	22.6174
((..((((...........)))).	chr5:176963489-176963774(-)$1	1	233	257	20.7932
..((((..............))))	chr12:56388090-56388378(+)$1	1	215	239	21.6269
((((((.............)))))	chr19:14203526-14203821(-)$1	1	260	284	21.7816
...(((............)))...	chr10:102732380-102732668(+)$1	1	206	230	22.8662
((((.((............)).).	chr16:28846322-28846598(+)$1	1	247	271	21.4518
(.((((..............))))	chr17:29687495-29687770(+)$1	1	243	267	22.7638
..(((((............)))))	chrX:133930550-133930818(-)$1	1	11	35	21.7830
((.(((..............))).	chr7:767072-767418(+)$1	1	17	41	22.5774
.(((((((...........)))).	chr3:38454855-38455109(+)$1	1	204	228	20.9195
((.((................)).	chr14:76117451-76117668(-)$1	1	135	159	20.0648
(.((((..............))))	chr16:57417255-57417510(+)$1	1	68	92	22.8187
...(((((...........)))))	chr8:48685684-48685962(-)$1	1	10	34	21.4233
(..(((............)))..)	chr1:236140879-236141141(-)$1	1	214	238	22.3981
..((((.............))))(	chr1:156209532-156209847(+)$1	1	65	89	21.9165
)))((((............)))).	chr11:2160091-2160301(-)$1	1	95	119	21.7010
..((((.............)))).	chr19:45323447-45323661(+)$1	1	72	96	21.3088
(((((((............)))))	chr17:7215370-7215637(+)$1	1	231	255	22.7324
(..(((...........)))..))	chrX:38547190-38547481(+)$1	1	85	109	20.6004
).(((((............)))))	chr16:28915528-28915796(+)$1	1	89	113	22.3456
((..((............))..))	chr19:42751649-42751899(-)$1	1	13	37	21.3214
..((((..............))))	chr19:4046985-4047226(-)$1	1	134	158	23.1586
..((((..............))))	chr20:43954826-43955038(-)$1	1	87	111	21.6269
.(((((...............)))	chr12:6776384-6776682(-)$1	1	190	214	19.2094
(((((((............)))))	chr17:7215437-7215650(+)$1	1	164	188	22.7324
..((((.............)))).	chr19:45323510-45323724(+)$1	1	9	33	21.3088
..((((.............)))).	chr19:45323334-45323582(+)$1	1	185	209	21.3088
..(((((............)))))	chr11:119534481-119534736(-)$1	1	57	81	21.7830
((((((..............))))	chr12:57504874-57505141(-)$1	1	48	72	22.3955
.(((((...............)))	chr11:838476-838752(+)$1	1	201	225	19.1506
..(((((............)))))	chr1:2240991-2241239(+)$1	1	116	140	22.9845
..((((..............))))	chr19:56671716-56671990(+)$1	1	60	84	22.8284
.(((((.............)))))	chr17:40946780-40947158(+)$1	1	112	136	22.8067
..((((...............)))	chr19:48894623-48894905(-)$1	1	139	163	19.2654
((((((.............)))))	chr11:64532538-64532819(-)$1	1	204	228	22.8003
(((((..............)))))	chrX:48325656-48325931(-)$1	1	163	187	22.1620
....(((............)))..	chrX:47074319-47074609(+)$1	1	33	57	21.1469
(((((((............)))))	chr5:176524903-176525178(+)$1	1	44	68	22.7324
((.(((............))))))	chr10:60936359-60936688(+)$1	1	283	307	22.7326
...(((................))	chr1:150238460-150238718(-)$1	1	95	119	21.8477
((((.(.............).)))	chr13:100153705-100153927(+)$1	1	47	71	22.2023
..((((.............)))))	chr2:28635603-28635881(+)$1	1	164	188	21.2092
)(((((.............)))))	chr16:67471844-67472119(-)$1	1	232	256	22.5061
...(((................))	chr16:87733897-87734236(-)$1	1	157	181	21.8477
((.((((...........))))))	chr8:144989417-144989724(-)$1	1	155	179	21.2219
..((((..............))))	chr17:4637017-4637263(-)$1	1	196	220	21.6269
((((((............))))))	chr20:48698602-48698852(-)$1	1	83	107	20.8975
(((.((................))	chr20:32667855-32668100(+)$1	1	181	205	20.1075
(((((((...........)))).)	chr6:43479810-43480090(-)$1	1	53	77	20.9909
((((((.............)))))	chr6:42906630-42906914(+)$1	1	6	30	22.7885
..((((.............)))).	chr11:45826779-45827191(+)$1	1	144	168	22.4886
((.(((((...........)))))	chr11:2153577-2153788(-)$1	1	99	123	21.0729
((((((.............)))))	chr6:30037602-30037834(+)$1	1	44	68	22.7885
(((.((................))	chr19:1925369-1925639(+)$1	1	52	76	20.1528
((.(((((...........)))))	chr11:2153588-2153795(-)$1	1	106	130	21.0729
.(((((((...........)))).	chr2:85548044-85548254(-)$1	1	125	149	20.4146
.(((((..............))))	chr5:73925501-73925776(-)$1	1	145	169	23.0116
)(((((.............)))))	chr19:6677790-6678010(-)$1	1	102	126	23.2471
.(((((................))	chr16:31085696-31086036(+)$1	1	212	236	21.1666
((((((..............))))	chr2:242694658-242694933(+)$1	1	40	64	21.4656
(((((((............)))))	chr7:100212747-100213058(+)$1	1	236	260	22.2444
((((((.............)))))	chr19:56128296-56128533(+)$1	1	139	163	22.7885

#PSSM
: : 0.19	f : 0.14	e : 0.10	" : 0.07	g : 0.07	c : 0.05	b : 0.05	d : 0.04	= : 0.04	[ : 0.04	$ : 0.04	# : 0.02	! : 0.02	i : 0.02	D : 0.01	% : 0.01	
e : 0.17	: : 0.16	f : 0.13	g : 0.07	! : 0.05	b : 0.05	" : 0.05	c : 0.05	= : 0.04	$ : 0.04	[ : 0.02	d : 0.02	i : 0.02	a : 0.01	# : 0.01	% : 0.01	
d : 0.23	e : 0.20	[ : 0.11	f : 0.10	! : 0.08	g : 0.05	" : 0.04	c : 0.04	= : 0.04	i : 0.02	# : 0.01	$ : 0.01	
d : 0.25	e : 0.23	c : 0.17	f : 0.08	g : 0.05	! : 0.04	= : 0.04	i : 0.02	[ : 0.02	a : 0.01	b : 0.01	$ : 0.01	
d : 0.29	e : 0.23	c : 0.16	b : 0.07	f : 0.07	g : 0.05	= : 0.04	[ : 0.02	i : 0.02	
d : 0.29	e : 0.22	c : 0.16	b : 0.07	f : 0.07	g : 0.05	= : 0.04	i : 0.02	y : 0.01	w : 0.01	a : 0.01	
v : 0.25	w : 0.17	u : 0.11	y : 0.11	e : 0.10	d : 0.08	= : 0.04	x : 0.04	b : 0.01	t : 0.01	c : 0.01	i : 0.01	
u : 0.27	v : 0.25	w : 0.17	y : 0.11	d : 0.04	e : 0.04	t : 0.04	x : 0.04	
u : 0.27	v : 0.25	w : 0.17	t : 0.13	y : 0.11	x : 0.04	
u : 0.27	v : 0.25	w : 0.17	t : 0.13	y : 0.11	x : 0.04	
u : 0.27	v : 0.25	w : 0.17	t : 0.13	y : 0.11	x : 0.04	
u : 0.27	v : 0.25	w : 0.17	t : 0.13	y : 0.11	x : 0.04	
u : 0.27	v : 0.25	w : 0.17	t : 0.13	y : 0.11	x : 0.04	
u : 0.27	v : 0.25	w : 0.17	t : 0.13	y : 0.11	x : 0.04	
u : 0.27	v : 0.25	w : 0.17	t : 0.13	y : 0.11	x : 0.04	
u : 0.27	v : 0.25	w : 0.17	t : 0.13	y : 0.11	x : 0.04	
u : 0.27	v : 0.25	w : 0.17	t : 0.13	y : 0.11	x : 0.04	
u : 0.27	v : 0.25	w : 0.17	y : 0.11	t : 0.11	x : 0.04	c : 0.01	
v : 0.25	w : 0.17	u : 0.16	y : 0.11	c : 0.08	t : 0.08	x : 0.04	b : 0.02	d : 0.02	f : 0.01	
d : 0.17	w : 0.16	e : 0.16	c : 0.11	y : 0.11	b : 0.04	f : 0.04	= : 0.04	x : 0.04	g : 0.04	i : 0.02	a : 0.01	
d : 0.27	e : 0.17	c : 0.11	y : 0.11	f : 0.05	g : 0.05	2 : 0.04	= : 0.04	x : 0.04	i : 0.02	b : 0.01	] : 0.01	
d : 0.29	e : 0.22	y : 0.10	2 : 0.07	f : 0.07	g : 0.05	c : 0.04	= : 0.04	i : 0.02	a : 0.01	3 : 0.01	] : 0.01	b : 0.01	
e : 0.27	d : 0.26	f : 0.08	g : 0.07	b : 0.05	c : 0.05	2 : 0.04	= : 0.04	i : 0.02	3 : 0.01	a : 0.01	6 : 0.01	] : 0.01	
e : 0.30	d : 0.11	f : 0.08	g : 0.07	c : 0.05	2 : 0.05	b : 0.05	: : 0.05	] : 0.04	= : 0.04	i : 0.02	3 : 0.01	6 : 0.01	E : 0.01	9 : 0.01	

#score	1478.9438413717075
#seq	68
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_UTR_m2_run1.txt

#BEAR
e[eeeeeuuuuuuuuuuuueeeee]	chr22:19956306-19956567(+)$1	261	42	67	23.3453
!ffffffuuuuuuuuuuuuffffff	chr14:21461889-21462202(+)$1	313	207	232	22.4690
=======vvvvvvvvvvvvv=====	chr19:39369331-39369619(-)$1	288	234	259	23.9244
"ffffffuuuuuuuuuuuuffffff	chr21:40717940-40718195(-)$1	255	173	198	22.3954
hh"""bbvvvvvvvvvvvvvbb333	chr7:158433534-158433829(-)$1	295	203	228	22.7834
"""dddduuuuuuuuuuuudddd22	chr10:88810184-88810444(-)$1	260	186	211	23.5871
c!!ddddtttttttttttdddd22c	chr3:183888833-183889105(+)$1	272	169	194	21.6408
=======wwwwwwwwwwwwww====	chr4:77956855-77957221(+)$1	366	95	120	23.1243
::ccc[bbtttttttttttbb]ccc	chr1:78482651-78482957(+)$1	306	226	251	18.8914
$$$dddduuuuuuuuuuuudddd66	chr16:28978061-28978355(+)$1	294	250	275	22.1344
eee[cccwwwwwwwwwwwwwwccc]	chr18:214188-214502(+)$1	314	253	278	22.7932
fff!!bbwwwwwwwwwwwwwwbb]f	chr8:64122488-64122745(+)$1	257	28	53	21.8391
ddddddduuuuuuuuuuuudddd22	chr8:17913880-17914208(-)$1	328	215	240	23.0927
ddd[cccuuuuuuuuuuuuccc]dd	chr7:140424882-140425179(-)$1	297	205	230	23.3151
=======uuuuuuuuuuuu======	chr6:163994664-163994985(+)$1	321	284	309	23.8115
gggggggtttttttttttggggggg	chr2:55254514-55254782(-)$1	268	147	172	21.2855
dddd"""attttttttttta333dd	chr20:57475219-57475520(+)$1	301	162	187	21.6501
$$$ddddvvvvvvvvvvvvvddddb	chr4:76447652-76447945(+)$1	293	241	266	22.8770
ffffffwwwwwwwwwwwwwwfffff	chr18:2582383-2582715(+)$1	332	16	41	21.5406
cceeeeeuuuuuuuuuuuueeeee]	chr14:50291841-50292133(-)$1	292	150	175	23.3272
!ccc[bbwwwwwwwwwwwwwwbb]c	chr12:30872369-30872641(-)$1	272	212	237	22.1333
ffffffwwwwwwwwwwwwwwfffff	chr10:93622933-93623245(+)$1	312	112	137	21.5406
[gggggggtttttttttttgggggg	chr16:24801218-24801520(+)$1	302	144	169	21.5118
dddddddvvvvvvvvvvvvvdddd:	chr2:209169984-209170301(+)$1	317	186	211	22.4684
]bbddddwwwwwwwwwwwwwwdddd	chrX:123512184-123512511(-)$1	327	201	226	21.9729
eee[bbwwwwwwwwwwwwwwbb]ee	chr5:34813486-34813804(+)$1	318	228	253	21.6137
[cccddddtttttttttttdddd99	chr2:85547883-85548195(-)$1	312	66	91	20.4288
$eeeeewwwwwwwwwwwwwweeeee	chr11:68505360-68505709(-)$1	349	123	148	22.1016
ffeeeeevvvvvvvvvvvvveeeee	chr17:15133359-15133640(-)$1	281	168	193	23.1238
dd[ddddvvvvvvvvvvvvvddddd	chr17:22022475-22022739(+)$1	264	103	128	23.5192
c!!ddddtttttttttttdddd22c	chr3:183888905-183889247(+)$1	342	97	122	21.6408
cceeeeevvvvvvvvvvvvveeeee	chr20:57475320-57475575(+)$1	255	229	254	23.3050
iii!!ccctttttttttttccc22i	chr2:62095462-62095750(-)$1	288	10	35	22.0752
"ffffffwwwwwwwwwwwwwwffff	chr12:51381271-51381613(-)$1	342	197	222	21.9121
ddd!!bbvvvvvvvvvvvvvbb22d	chr19:46287260-46287565(-)$1	305	140	165	22.4610
c"""cccuuuuuuuuuuuuccc333	chr15:42813698-42813949(+)$1	251	37	62	23.9658
[eeeeexxxxxxxxxxxxxxxeeee	chr3:176741351-176741741(-)$1	390	134	159	18.2796
ffffffvvvvvvvvvvvvvffffff	chr4:128607243-128607572(+)$1	329	122	147	21.6512
g"""cccuuuuuuuuuuuuccc666	chr17:17089164-17089472(+)$1	308	173	198	22.3318
:ffffffuuuuuuuuuuuuffffff	chr11:96075095-96075359(-)$1	264	70	95	21.3223
GGGddddwwwwwwwwwwwwwwdddd	chr3:96336719-96336997(-)$1	278	230	255	21.1155
ddddddduuuuuuuuuuuudddd]d	chr8:67543396-67543706(-)$1	310	241	266	23.2133
ee[ddddvvvvvvvvvvvvvdddd2	chr14:31086835-31087174(+)$1	339	248	273	23.5965
hhheeeeettttttttttteeeee:	chr11:96075322-96075636(-)$1	314	284	309	20.0067
cccddddwwwwwwwwwwwwwwdddd	chr9:123942860-123943139(-)$1	279	195	220	22.7542
hhhhhhhuuuuuuuuuuuuhhhhhh	chrX:70794175-70794501(+)$1	326	1	26	20.7801
"""cccbbtttttttttttbb]ccc	chr18:51905481-51905779(+)$1	298	176	201	21.1850
"""ddddwwwwwwwwwwwwwwdddd	chr1:198291199-198291472(+)$1	273	182	207	22.9628
gggggggtttttttttttggggggg	chr1:114520116-114520417(+)$1	301	242	267	21.2855
cc[ddddyyyyyyyyyyyyyyyydd	chr20:17588112-17588403(+)$1	291	4	29	20.7264
eee!!bbxxxxxxxxxxxxxxxbb2	chr13:98017145-98017492(+)$1	347	97	122	17.2340
========ttttttttttt======	chr1:117645209-117645484(+)$1	275	105	130	21.9246
ff[ddddyyyyyyyyyyyyyyyydd	chr12:122617074-122617380(+)$1	306	110	135	20.5452
=======xxxxxxxxxxxxxxx===	chr7:86792276-86792592(+)$1	316	102	127	18.6735
[ffffffvvvvvvvvvvvvvfffff	chr3:183704475-183704764(-)$1	289	191	216	22.6957
[bbbbyyyyyyyyyyyyyyyybb]b	chr1:109427889-109428205(+)$1	316	22	47	19.0165
hhhhhhhuuuuuuuuuuuuhhhhhh	chr1:54512960-54513227(-)$1	267	214	239	20.7801
ddddbbwwwwwwwwwwwwwwbb]dd	chr9:86584384-86584720(-)$1	336	209	234	21.3936
==[ddddtttttttttttdddd===	chr14:97001018-97001322(+)$1	304	196	221	21.9872
hhhhhhhvvvvvvvvvvvvvhhhhh	chr1:117645299-117645530(+)$1	231	124	149	21.2650
c:eeeeeuuuuuuuuuuuueeeee:	chr18:34374755-34375057(-)$1	302	179	204	21.3084
ddd[cccwwwwwwwwwwwwwwccc]	chr16:47497630-47497931(+)$1	301	134	159	22.6362
eee[ddddtttttttttttdddd22	chr11:3011918-3012192(-)$1	274	124	149	21.4638
e[eeeeeuuuuuuuuuuuueeeee]	chr3:194997079-194997390(-)$1	311	218	243	23.3453
!!ddddwwwwwwwwwwwwwwdddd]	chr21:36259457-36259693(-)$1	236	79	104	22.8892
gggggggtttttttttttggggggg	chr11:22842216-22842488(-)$1	272	225	250	21.2855

#otherMatches

#Seq PSSM
GCUGUGUCCUAAAUGCAAAGCACAC	chr22:19956306-19956567(+)$1	261	42	67	23.3453
UUGGUGAUUUAUAAUAAUUUUGCCA	chr14:21461889-21462202(+)$1	313	207	232	22.4690
GUGUGGGCCUCUGAAUAUAACCCAC	chr19:39369331-39369619(-)$1	288	234	259	23.9244
CAAGGAAUAAAUGUUAAGCUUUCUU	chr21:40717940-40718195(-)$1	255	173	198	22.3954
ucauugcugucauucauuuugcuaa	chr7:158433534-158433829(-)$1	295	203	228	22.7834
UCUACGUUUUCCAAAACUUACGUUU	chr10:88810184-88810444(-)$1	260	186	211	23.5871
GACUUUACCCCACAUUACUGAAACC	chr3:183888833-183889105(+)$1	272	169	194	21.6408
GGAAGAGUGCAUAUUUAAUCUCUUU	chr4:77956855-77957221(+)$1	366	95	120	23.1243
ACUGCUGCUUAUGGAUAAUGUUGCA	chr1:78482651-78482957(+)$1	306	226	251	18.8914
UACAGCUCUUCACUUUUUCAGCUUU	chr16:28978061-28978355(+)$1	294	250	275	22.1344
CAACCCAACCUCCCCAAACUCUGGU	chr18:214188-214502(+)$1	314	253	278	22.7932
CUUUUGUAAUUAUGCAUCCUAGCUA	chr8:64122488-64122745(+)$1	257	28	53	21.8391
UCCUGACACUCAAUAAACAGUCACU	chr8:17913880-17914208(-)$1	328	215	240	23.0927
UGCAACCUAAAAUAAAAAUGGUGGC	chr7:140424882-140425179(-)$1	297	205	230	23.3151
AACAUAGUGUGACUUGUUUUUAUGU	chr6:163994664-163994985(+)$1	321	284	309	23.8115
GUCCAUGGUCACAGAAAAUAUGGAC	chr2:55254514-55254782(-)$1	268	147	172	21.2855
UGCACGUCUCUCUCACUCUGUUCUG	chr20:57475219-57475520(+)$1	301	162	187	21.6501
uauguaauguuugucuuucuuugcc	chr4:76447652-76447945(+)$1	293	241	266	22.8770
acauauuuuuuaucaaugccaugug	chr18:2582383-2582715(+)$1	332	16	41	21.5406
cuuguguuccauuacauacacacac	chr14:50291841-50292133(-)$1	292	150	175	23.3272
UAGGUGCGUAUAAAAAGUUCAGCCC	chr12:30872369-30872641(-)$1	272	212	237	22.1333
GCAUUGAUUCUAACAAACUGUAAUG	chr10:93622933-93623245(+)$1	312	112	137	21.5406
CCGGUUCAGUGCAGAAUAAUGAGCU	chr16:24801218-24801520(+)$1	302	144	169	21.5118
GGGGGAAAAUCAUUCACACAUUCCA	chr2:209169984-209170301(+)$1	317	186	211	22.4684
ACCUCCACACCAACCUAAAAAUGGA	chrX:123512184-123512511(-)$1	327	201	226	21.9729
GGAACUCCAAAAAAACGCAAAGCUC	chr5:34813486-34813804(+)$1	318	228	253	21.6137
UGCUCAACUUCUCCAGUAUGUUGCU	chr2:85547883-85548195(-)$1	312	66	91	20.4288
UGUUUAUAAUUGUUGCUAAUUAAAC	chr11:68505360-68505709(-)$1	349	123	148	22.1016
AUAGAAUGGAGACCUGAAUAAUUCU	chr17:15133359-15133640(-)$1	281	168	193	23.1238
AGCAAGGACAAACCCCUAUACCUUC	chr17:22022475-22022739(+)$1	264	103	128	23.5192
GACUUUACCCCACAUUACUGAAACC	chr3:183888905-183889247(+)$1	342	97	122	21.6408
AAUAGCUUCCCCCACCACUUAGUUA	chr20:57475320-57475575(+)$1	255	229	254	23.3050
UUAUUUCCUCUGAAUUUCUGGGCUU	chr2:62095462-62095750(-)$1	288	10	35	22.0752
UUCCUCAGAUUGAAAAGCUUAUGAG	chr12:51381271-51381613(-)$1	342	197	222	21.9121
UCAACGUAUUAACAAGACUAACCAU	chr19:46287260-46287565(-)$1	305	140	165	22.4610
ACUGGCAUUUACUAUUUUCUGCAUU	chr15:42813698-42813949(+)$1	251	37	62	23.9658
CACUAAUUAUUUUGAGGCCUUUUAG	chr3:176741351-176741741(-)$1	390	134	159	18.2796
GUUGUGACCAAAUUAAAGCUAUAAC	chr4:128607243-128607572(+)$1	329	122	147	21.6512
ACCACCACAAAACAUUCUAUGGCAA	chr17:17089164-17089472(+)$1	308	173	198	22.3318
UCCAACUUAUCCUCCCCCCAGUUGG	chr11:96075095-96075359(-)$1	264	70	95	21.3223
UAGAGGCGACAAACCUAUCGAGCCU	chr3:96336719-96336997(-)$1	278	230	255	21.1155
GUUUUGUCUUCAUUUUUCAACAGUA	chr8:67543396-67543706(-)$1	310	241	266	23.2133
UCCUUAAUCUAUUAACAUAUUUAAA	chr14:31086835-31087174(+)$1	339	248	273	23.5965
CAACUCUGUCCAACUUCUCCAGAGC	chr11:96075322-96075636(-)$1	314	284	309	20.0067
GCAUUGGAACAGUAUAAAAUACCAG	chr9:123942860-123943139(-)$1	279	195	220	22.7542
UAGGUUUUAUAAACCACUUGAGCCU	chrX:70794175-70794501(+)$1	326	1	26	20.7801
UACUGCCUGACAAAAUUAAAGAGUA	chr18:51905481-51905779(+)$1	298	176	201	21.1850
CCUGUGCCUCAUAUUUCAAUAGUAC	chr1:198291199-198291472(+)$1	273	182	207	22.9628
UCUACAUAAUAUGGUAAAAUGUAGA	chr1:114520116-114520417(+)$1	301	242	267	21.2855
CUCAGCAUUUACUUUGUUUCUUUUG	chr20:17588112-17588403(+)$1	291	4	29	20.7264
ACAAUGUGAAUGGCCCUAAAAGACU	chr13:98017145-98017492(+)$1	347	97	122	17.2340
AGUAUUUGGuacaaucuaauaaaua	chr1:117645209-117645484(+)$1	275	105	130	21.9246
AGCUCUGCUCCGACUAAUUAACACA	chr12:122617074-122617380(+)$1	306	110	135	20.5452
AUGCUUUAAGAUAAAACAUAAAGAG	chr7:86792276-86792592(+)$1	316	102	127	18.6735
GUGUUAUGUAAUUUACCAAAAUGGC	chr3:183704475-183704764(-)$1	289	191	216	22.6957
GCUGCUGAAAGGGCCAGAGAUGCAA	chr1:109427889-109428205(+)$1	316	22	47	19.0165
CAGGCUGUUUUCAAUUUGUCAGUUU	chr1:54512960-54513227(-)$1	267	214	239	20.7801
CAUUGCUUUAAUUUGUAAUUGCUAA	chr9:86584384-86584720(-)$1	336	209	234	21.3936
AGGAUACUAAAAAUCCCUGUAUUUU	chr14:97001018-97001322(+)$1	304	196	221	21.9872
aauacuaauaauacuaacaguagua	chr1:117645299-117645530(+)$1	231	124	149	21.2650
UAACCACUUAUAAUUCAGUGUGGUC	chr18:34374755-34375057(-)$1	302	179	204	21.3084
CUGAUUGCUUCUAACCUUUACUAAA	chr16:47497630-47497931(+)$1	301	134	159	22.6362
gcaccagggacucuuucagccuguu	chr11:3011918-3012192(-)$1	274	124	149	21.4638
UUGAGCAGUCAUUUGCAAAUGCUUC	chr3:194997079-194997390(-)$1	311	218	243	23.3453
AACCAGAACGUUUUCCCCUCCUGGA	chr21:36259457-36259693(-)$1	236	79	104	22.8892
UGUUCCACUGCUGGUAUUUGGAAUG	chr11:22842216-22842488(-)$1	272	225	250	21.2855

#DB
(.(((((............))))).	chr22:19956306-19956567(+)$1	1	42	67	23.3453
.((((((............))))))	chr14:21461889-21462202(+)$1	1	207	232	22.4690
(((((((.............)))))	chr19:39369331-39369619(-)$1	1	234	259	23.9244
.((((((............))))))	chr21:40717940-40718195(-)$1	1	173	198	22.3954
((...((.............))...	chr7:158433534-158433829(-)$1	1	203	228	22.7834
...((((............))))..	chr10:88810184-88810444(-)$1	1	186	211	23.5871
(..((((...........))))..)	chr3:183888833-183889105(+)$1	1	169	194	21.6408
(((((((..............))))	chr4:77956855-77957221(+)$1	1	95	120	23.1243
..(((.((...........)).)))	chr1:78482651-78482957(+)$1	1	226	251	18.8914
...((((............))))..	chr16:28978061-28978355(+)$1	1	250	275	22.1344
(((.(((..............))).	chr18:214188-214502(+)$1	1	253	278	22.7932
(((..((..............)).)	chr8:64122488-64122745(+)$1	1	28	53	21.8391
(((((((............))))..	chr8:17913880-17914208(-)$1	1	215	240	23.0927
(((.(((............))).))	chr7:140424882-140425179(-)$1	1	205	230	23.3151
(((((((............))))))	chr6:163994664-163994985(+)$1	1	284	309	23.8115
(((((((...........)))))))	chr2:55254514-55254782(-)$1	1	147	172	21.2855
((((...(...........)...))	chr20:57475219-57475520(+)$1	1	162	187	21.6501
...((((.............)))))	chr4:76447652-76447945(+)$1	1	241	266	22.8770
((((((..............)))))	chr18:2582383-2582715(+)$1	1	16	41	21.5406
(((((((............))))).	chr14:50291841-50292133(-)$1	1	150	175	23.3272
.(((.((..............)).)	chr12:30872369-30872641(-)$1	1	212	237	22.1333
((((((..............)))))	chr10:93622933-93623245(+)$1	1	112	137	21.5406
.(((((((...........))))))	chr16:24801218-24801520(+)$1	1	144	169	21.5118
)))((((.............)))).	chr2:209169984-209170301(+)$1	1	186	211	22.4684
.))((((..............))))	chrX:123512184-123512511(-)$1	1	201	226	21.9729
(((.((..............)).))	chr5:34813486-34813804(+)$1	1	228	253	21.6137
.(((((((...........))))..	chr2:85547883-85548195(-)$1	1	66	91	20.4288
.(((((..............)))))	chr11:68505360-68505709(-)$1	1	123	148	22.1016
))(((((.............)))))	chr17:15133359-15133640(-)$1	1	168	193	23.1238
((.((((.............)))))	chr17:22022475-22022739(+)$1	1	103	128	23.5192
(..((((...........))))..)	chr3:183888905-183889247(+)$1	1	97	122	21.6408
))(((((.............)))))	chr20:57475320-57475575(+)$1	1	229	254	23.3050
(((..(((...........)))..)	chr2:62095462-62095750(-)$1	1	10	35	22.0752
.((((((..............))))	chr12:51381271-51381613(-)$1	1	197	222	21.9121
(((..((.............))..)	chr19:46287260-46287565(-)$1	1	140	165	22.4610
(...(((............)))...	chr15:42813698-42813949(+)$1	1	37	62	23.9658
.(((((...............))))	chr3:176741351-176741741(-)$1	1	134	159	18.2796
((((((.............))))))	chr4:128607243-128607572(+)$1	1	122	147	21.6512
(...(((............)))...	chr17:17089164-17089472(+)$1	1	173	198	22.3318
.((((((............))))))	chr11:96075095-96075359(-)$1	1	70	95	21.3223
)))((((..............))))	chr3:96336719-96336997(-)$1	1	230	255	21.1155
(((((((............)))).)	chr8:67543396-67543706(-)$1	1	241	266	23.2133
((.((((.............)))).	chr14:31086835-31087174(+)$1	1	248	273	23.5965
)))(((((...........))))).	chr11:96075322-96075636(-)$1	1	284	309	20.0067
(((((((..............))))	chr9:123942860-123943139(-)$1	1	195	220	22.7542
(((((((............))))))	chrX:70794175-70794501(+)$1	1	1	26	20.7801
...(((((...........)).)))	chr18:51905481-51905779(+)$1	1	176	201	21.1850
...((((..............))))	chr1:198291199-198291472(+)$1	1	182	207	22.9628
(((((((...........)))))))	chr1:114520116-114520417(+)$1	1	242	267	21.2855
((.((((................))	chr20:17588112-17588403(+)$1	1	4	29	20.7264
(((..((...............)).	chr13:98017145-98017492(+)$1	1	97	122	17.2340
((((((((...........))))))	chr1:117645209-117645484(+)$1	1	105	130	21.9246
((.((((................))	chr12:122617074-122617380(+)$1	1	110	135	20.5452
(((((((...............)))	chr7:86792276-86792592(+)$1	1	102	127	18.6735
.((((((.............)))))	chr3:183704475-183704764(-)$1	1	191	216	22.6957
.((((................)).)	chr1:109427889-109428205(+)$1	1	22	47	19.0165
(((((((............))))))	chr1:54512960-54513227(-)$1	1	214	239	20.7801
((((((..............)).))	chr9:86584384-86584720(-)$1	1	209	234	21.3936
((.((((...........)))))))	chr14:97001018-97001322(+)$1	1	196	221	21.9872
(((((((.............)))))	chr1:117645299-117645530(+)$1	1	124	149	21.2650
).(((((............))))).	chr18:34374755-34375057(-)$1	1	179	204	21.3084
(((.(((..............))).	chr16:47497630-47497931(+)$1	1	134	159	22.6362
(((.((((...........))))..	chr11:3011918-3012192(-)$1	1	124	149	21.4638
(.(((((............))))).	chr3:194997079-194997390(-)$1	1	218	243	23.3453
..((((..............)))).	chr21:36259457-36259693(-)$1	1	79	104	22.8892
(((((((...........)))))))	chr11:22842216-22842488(-)$1	1	225	250	21.2855

#PSSM
d : 0.13	c : 0.12	e : 0.10	= : 0.09	f : 0.09	" : 0.07	h : 0.07	[ : 0.07	g : 0.06	! : 0.04	$ : 0.04	: : 0.03	] : 0.01	i : 0.01	G : 0.01	
f : 0.16	d : 0.13	e : 0.10	= : 0.09	c : 0.09	h : 0.07	" : 0.07	g : 0.06	! : 0.04	[ : 0.03	: : 0.03	$ : 0.03	b : 0.03	i : 0.01	G : 0.01	
e : 0.18	f : 0.13	d : 0.13	" : 0.09	= : 0.07	[ : 0.07	c : 0.06	g : 0.06	h : 0.06	! : 0.03	$ : 0.03	b : 0.03	i : 0.01	G : 0.01	
d : 0.30	e : 0.13	f : 0.12	= : 0.07	[ : 0.07	c : 0.06	! : 0.06	g : 0.06	" : 0.04	h : 0.04	b : 0.01	
d : 0.30	e : 0.13	f : 0.12	c : 0.10	= : 0.07	! : 0.06	g : 0.06	b : 0.04	h : 0.04	" : 0.03	[ : 0.01	
d : 0.30	e : 0.13	f : 0.12	b : 0.10	c : 0.10	= : 0.07	g : 0.06	h : 0.04	[ : 0.01	" : 0.01	y : 0.01	
d : 0.28	e : 0.10	b : 0.10	c : 0.09	w : 0.09	f : 0.07	= : 0.07	g : 0.06	h : 0.04	" : 0.01	x : 0.01	v : 0.01	y : 0.01	
u : 0.25	w : 0.24	v : 0.18	t : 0.09	x : 0.04	y : 0.04	b : 0.03	d : 0.03	a : 0.01	g : 0.01	c : 0.01	e : 0.01	= : 0.01	
u : 0.25	w : 0.24	t : 0.22	v : 0.18	x : 0.04	y : 0.04	
u : 0.25	w : 0.24	t : 0.22	v : 0.18	x : 0.04	y : 0.04	
u : 0.25	w : 0.24	t : 0.22	v : 0.18	x : 0.04	y : 0.04	
u : 0.25	w : 0.24	t : 0.22	v : 0.18	x : 0.04	y : 0.04	
u : 0.25	w : 0.24	t : 0.22	v : 0.18	x : 0.04	y : 0.04	
u : 0.25	w : 0.24	t : 0.22	v : 0.18	x : 0.04	y : 0.04	
u : 0.25	w : 0.24	t : 0.22	v : 0.18	x : 0.04	y : 0.04	
u : 0.25	w : 0.24	t : 0.22	v : 0.18	x : 0.04	y : 0.04	
u : 0.25	w : 0.24	t : 0.22	v : 0.18	x : 0.04	y : 0.04	
u : 0.25	w : 0.24	t : 0.22	v : 0.18	x : 0.04	y : 0.04	
u : 0.25	w : 0.24	v : 0.18	t : 0.13	d : 0.04	g : 0.04	x : 0.04	y : 0.04	
w : 0.24	v : 0.16	d : 0.13	e : 0.07	f : 0.06	c : 0.06	g : 0.06	x : 0.04	y : 0.04	b : 0.03	= : 0.03	h : 0.03	a : 0.01	
d : 0.21	w : 0.15	e : 0.12	f : 0.10	b : 0.09	c : 0.06	g : 0.06	= : 0.04	x : 0.04	h : 0.04	y : 0.04	3 : 0.01	
d : 0.27	e : 0.13	f : 0.12	b : 0.10	c : 0.09	= : 0.06	g : 0.06	h : 0.04	] : 0.03	y : 0.03	x : 0.03	3 : 0.01	
d : 0.22	e : 0.13	f : 0.12	= : 0.09	2 : 0.06	c : 0.06	b : 0.06	g : 0.06	3 : 0.04	] : 0.04	h : 0.04	y : 0.03	6 : 0.01	
d : 0.21	e : 0.15	f : 0.12	2 : 0.10	= : 0.09	c : 0.06	] : 0.06	g : 0.06	h : 0.04	3 : 0.03	6 : 0.03	9 : 0.01	b : 0.01	
d : 0.18	f : 0.13	] : 0.09	= : 0.09	2 : 0.07	c : 0.07	e : 0.07	g : 0.06	: : 0.04	h : 0.04	3 : 0.03	6 : 0.03	b : 0.03	9 : 0.01	i : 0.01	

#score	1445.2595301245447
#seq	66
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_transcript_m3_run1.txt

#BEAR
$ccc[cccmmmmcccccc	chr9:100777588-100777836(+)$1	248	33	51	8.9504
ee"""cccmmmmccc]ee	chr19:10220339-10220549(+)$1	210	112	130	8.8551
gggg!!bbmmmmbbgggg	chr19:24187184-24187410(-)$1	226	9	27	9.8476
========mmmm======	chr12:110719310-110719663(+)$1	353	20	38	10.7913
ccc[ddddmmmmdddd]c	chr2:203141052-203141317(+)$1	265	232	250	7.7103
gg[bb[bbmmmmbb]bb]	chr16:85689999-85690336(+)$1	337	195	213	8.3726
[bb[ddddmmmmdddd]b	chr8:1780087-1780376(+)$1	289	94	112	7.5941
dddd!!bbmmmmbb]ddd	chr1:28907247-28907486(-)$1	239	71	89	8.0710
ggg"""bbmmmmbb22gg	chr1:234744798-234745071(-)$1	273	4	22	9.3192
ggggggbbmmmmbb]ggg	chr7:45144136-45144441(-)$1	305	210	228	9.7249
dddd[cccmmmmcccddd	chr8:144940390-144940802(-)$1	412	378	396	7.9814
iiiiiiiimmmmiiiiii	chr11:93454801-93455112(+)$1	311	53	71	10.3470
hhhhh[bbmmmmbb]hhh	chr22:21800173-21800439(+)$1	266	152	170	8.4146
========mmmm======	chrX:20154135-20154420(-)$1	285	58	76	10.7913
"bb!!cccmmmmccc]bb	chr2:203142732-203142979(+)$1	247	72	90	9.1217
#gggggggmmmmgggggg	chr5:651415-651716(+)$1	301	269	287	9.5939
!gggggggmmmmgggggg	chr13:92000677-92000958(+)$1	281	240	258	9.7026
iiiiiiiimmmmiiiiii	chr5:137896664-137896866(-)$1	202	177	195	10.3470
[bbaddddmmmmdddd]a	chr17:80045175-80045413(-)$1	238	18	36	7.4381
ggggggggglllgggggg	chr13:92000553-92000789(+)$1	236	203	221	7.0492
b!!bbcccmmmmccc]bb	chr22:19418924-19419268(-)$1	344	294	312	8.2150
dggggggglllggggggg	chr9:139734826-139735104(+)$1	278	112	130	6.7991
fffffcccmmmmccc22f	chr1:31440943-31441165(-)$1	222	40	58	7.8773
!bb[a[bbmmmmbb]abb	chr1:173835929-173836179(-)$1	250	90	108	8.8623
========mmmm======	chr11:93454578-93454874(+)$1	296	111	129	10.7913
iiiiiiiimmmmiiiiii	chr5:137896666-137896876(-)$1	210	187	205	10.3470
=====ccc4444ccc]cc	chr19:24187174-24187384(-)$1	210	184	202	6.9264
========mmmm======	chrX:20154220-20154509(-)$1	289	147	165	10.7913

#otherMatches

#Seq PSSM
AAGUCAAUUUUUGUUACU	chr9:100777588-100777836(+)$1	248	33	51	8.9504
GCACUUCUGCUGAGACGC	chr19:10220339-10220549(+)$1	210	112	130	8.8551
CUCAUUGGCUGACCUGAG	chr19:24187184-24187410(-)$1	226	9	27	9.8476
CUCCCUUCUGGCGAGGGG	chr12:110719310-110719663(+)$1	353	20	38	10.7913
gggcgugauggcucacac	chr2:203141052-203141317(+)$1	265	232	250	7.7103
CGAGCUGCAUGGGCUGCG	chr16:85689999-85690336(+)$1	337	195	213	8.3726
GUGGGGACAGGAGUCUGU	chr8:1780087-1780376(+)$1	289	94	112	7.5941
CUUUCAGCUGUAGCCAGA	chr1:28907247-28907486(-)$1	239	71	89	8.0710
GCUCAAGCGGGCGCACGG	chr1:234744798-234745071(-)$1	273	4	22	9.3192
GUCCGUGCCCUUGCUGCG	chr7:45144136-45144441(-)$1	305	210	228	9.7249
AGCACGGCAUCCGCCUGC	chr8:144940390-144940802(-)$1	412	378	396	7.9814
uguguguguguguACGCA	chr11:93454801-93455112(+)$1	311	53	71	10.3470
GGGCUGGCCCUAGCGGGC	chr22:21800173-21800439(+)$1	266	152	170	8.4146
GUGUGUGUGUGUGCACGC	chrX:20154135-20154420(-)$1	285	58	76	10.7913
UGCUUCAGUUGCCUGUGU	chr2:203142732-203142979(+)$1	247	72	90	9.1217
ACUCCCUGGCUAUAGGGG	chr5:651415-651716(+)$1	301	269	287	9.5939
GGAGGCCGCAGUCGGCCU	chr13:92000677-92000958(+)$1	281	240	258	9.7026
UUAUCUUGGACCUAAGAU	chr5:137896664-137896866(-)$1	202	177	195	10.3470
AGGCCCUGUGUGCAGGUG	chr17:80045175-80045413(-)$1	238	18	36	7.4381
GCGGGAGCCCGCGGUUCC	chr13:92000553-92000789(+)$1	236	203	221	7.0492
UCAACCACAAUGGUGAGU	chr22:19418924-19419268(-)$1	344	294	312	8.2150
cgccACCCUGGGGGUGGC	chr9:139734826-139735104(+)$1	278	112	130	6.7991
GAGCAGUGCUUUCACCUU	chr1:31440943-31441165(-)$1	222	40	58	7.8773
AAGAGGUGGUCUCAGCCU	chr1:173835929-173836179(-)$1	250	90	108	8.8623
UCUGCUUUUAGUGAAGUG	chr11:93454578-93454874(+)$1	296	111	129	10.7913
UUAUCUUGGACCUAAGAU	chr5:137896666-137896876(-)$1	210	187	205	10.3470
GACUCCGUGUUCCUCCCA	chr19:24187174-24187384(-)$1	210	184	202	6.9264
GUGUGUGUGUGUGCACGC	chrX:20154220-20154509(-)$1	289	147	165	10.7913

#DB
.(((.(((....))))))	chr9:100777588-100777836(+)$1	1	33	51	8.9504
((...(((....))).))	chr19:10220339-10220549(+)$1	1	112	130	8.8551
((((..((....))))))	chr19:24187184-24187410(-)$1	1	9	27	9.8476
((((((((....))))))	chr12:110719310-110719663(+)$1	1	20	38	10.7913
(((.((((....)))).)	chr2:203141052-203141317(+)$1	1	232	250	7.7103
((.((.((....)).)).	chr16:85689999-85690336(+)$1	1	195	213	8.3726
.((.((((....)))).)	chr8:1780087-1780376(+)$1	1	94	112	7.5941
((((..((....)).)))	chr1:28907247-28907486(-)$1	1	71	89	8.0710
(((...((....))..))	chr1:234744798-234745071(-)$1	1	4	22	9.3192
((((((((....)).)))	chr7:45144136-45144441(-)$1	1	210	228	9.7249
((((.(((....))))))	chr8:144940390-144940802(-)$1	1	378	396	7.9814
((((((((....))))))	chr11:93454801-93455112(+)$1	1	53	71	10.3470
(((((.((....)).)))	chr22:21800173-21800439(+)$1	1	152	170	8.4146
((((((((....))))))	chrX:20154135-20154420(-)$1	1	58	76	10.7913
.((..(((....))).))	chr2:203142732-203142979(+)$1	1	72	90	9.1217
.(((((((....))))))	chr5:651415-651716(+)$1	1	269	287	9.5939
.(((((((....))))))	chr13:92000677-92000958(+)$1	1	240	258	9.7026
((((((((....))))))	chr5:137896664-137896866(-)$1	1	177	195	10.3470
.(((((((....)))).)	chr17:80045175-80045413(-)$1	1	18	36	7.4381
))(((((((...))))))	chr13:92000553-92000789(+)$1	1	203	221	7.0492
(..(((((....))).))	chr22:19418924-19419268(-)$1	1	294	312	8.2150
)(((((((...)))))))	chr9:139734826-139735104(+)$1	1	112	130	6.7991
((((((((....)))..)	chr1:31440943-31441165(-)$1	1	40	58	7.8773
.((.(.((....)).)))	chr1:173835929-173836179(-)$1	1	90	108	8.8623
((((((((....))))))	chr11:93454578-93454874(+)$1	1	111	129	10.7913
((((((((....))))))	chr5:137896666-137896876(-)$1	1	187	205	10.3470
))))))))....))).))	chr19:24187174-24187384(-)$1	1	184	202	6.9264
((((((((....))))))	chrX:20154220-20154509(-)$1	1	147	165	10.7913

#PSSM
g : 0.17	= : 0.17	d : 0.10	i : 0.10	[ : 0.07	! : 0.07	$ : 0.03	e : 0.03	c : 0.03	h : 0.03	" : 0.03	# : 0.03	b : 0.03	f : 0.03	
g : 0.28	= : 0.17	b : 0.14	i : 0.10	c : 0.07	d : 0.07	e : 0.03	h : 0.03	! : 0.03	f : 0.03	
g : 0.24	= : 0.17	b : 0.14	i : 0.10	c : 0.07	d : 0.07	" : 0.03	[ : 0.03	h : 0.03	! : 0.03	f : 0.03	
g : 0.21	= : 0.17	[ : 0.10	i : 0.10	" : 0.07	b : 0.07	d : 0.07	c : 0.03	h : 0.03	! : 0.03	a : 0.03	f : 0.03	
= : 0.17	g : 0.17	! : 0.10	d : 0.10	i : 0.10	[ : 0.07	" : 0.07	b : 0.07	h : 0.03	f : 0.03	a : 0.03	
c : 0.24	g : 0.17	= : 0.14	d : 0.10	[ : 0.10	i : 0.10	! : 0.07	" : 0.03	
c : 0.24	b : 0.24	= : 0.14	g : 0.14	d : 0.10	i : 0.10	
c : 0.24	b : 0.24	= : 0.14	g : 0.14	d : 0.10	i : 0.10	
m : 0.89	g : 0.03	l : 0.03	4 : 0.03	
m : 0.89	l : 0.07	4 : 0.03	
m : 0.89	l : 0.07	4 : 0.03	
m : 0.89	l : 0.03	g : 0.03	4 : 0.03	
c : 0.24	b : 0.24	= : 0.14	g : 0.14	d : 0.10	i : 0.10	
c : 0.24	b : 0.24	= : 0.14	g : 0.14	d : 0.10	i : 0.10	
c : 0.24	g : 0.17	] : 0.17	= : 0.14	d : 0.10	i : 0.10	2 : 0.03	
g : 0.21	d : 0.17	] : 0.14	= : 0.14	i : 0.10	2 : 0.07	c : 0.03	b : 0.03	h : 0.03	a : 0.03	
g : 0.24	= : 0.14	b : 0.14	] : 0.10	i : 0.10	c : 0.07	d : 0.07	e : 0.03	h : 0.03	2 : 0.03	
g : 0.24	= : 0.14	b : 0.14	c : 0.10	i : 0.10	d : 0.07	e : 0.03	] : 0.03	h : 0.03	a : 0.03	f : 0.03	

#score	250.63453859194635
#seq	28
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_UTR_m2_run2.txt

#BEAR
[ccc"""gggggggtttttttttttggggggg]ccc]bb	chrX:132669812-132670037(-)$1	225	129	168	34.0576
[ccc"""gggggggtttttttttttggggggg]ccc]bb	chrX:132669837-132670063(-)$1	226	155	194	34.0576
gggggg!!eeeeeuuuuuuuuuuuueeeee4444ggggg	chr14:94908788-94909044(-)$1	256	61	100	30.1674
eeeee!!ffffffvvvvvvvvvvvvvffffff4444eee	chr14:50235029-50235305(+)$1	276	14	53	30.2252
ee[bb"""ddddbbvvvvvvvvvvvvvbb]dddd333bb	chr12:123998110-123998381(-)$1	271	106	145	31.2086
g[dddd####ddddtttttttttttdddd333dddd]gg	chr14:21731679-21731902(-)$1	223	178	217	30.9254

#otherMatches

#Seq PSSM
AAGUUGUGCCAAAUUAUUCUCCUAUGUUUGGCUGCUAGA	chrX:132669812-132670037(-)$1	225	129	168	34.0576
AAGUUGUGCCAAAUUAUUCUCCUAUGUUUGGCUGCUAGA	chrX:132669837-132670063(-)$1	226	155	194	34.0576
UACUCUUCCUGGGAAAAGUUGUCAACCCAGUUGCAGGGU	chr14:94908788-94909044(-)$1	256	61	100	30.1674
GGCGGCAGAGAGGCCUCAACGCCGUCCCUUUCGCCACCG	chr14:50235029-50235305(+)$1	276	14	53	30.2252
UUCCAAAGCACUCUUGUACUUUCUCUUAGCAGUGACCUG	chr12:123998110-123998381(-)$1	271	106	145	31.2086
GAGGAGCCUUUUAGCCUCUCAUAAACUGACCUCUCUACU	chr14:21731679-21731902(-)$1	223	178	217	30.9254

#DB
.(((...(((((((...........))))))).))).))	chrX:132669812-132670037(-)$1	1	129	168	34.0576
.(((...(((((((...........))))))).))).))	chrX:132669837-132670063(-)$1	1	155	194	34.0576
((((((..(((((............)))))....)))))	chr14:94908788-94909044(-)$1	1	61	100	30.1674
(((((..((((((.............))))))....)))	chr14:50235029-50235305(+)$1	1	14	53	30.2252
((.((...((((((.............)).))))...))	chr12:123998110-123998381(-)$1	1	106	145	31.2086
(.((((....((((...........))))...)))).))	chr14:21731679-21731902(-)$1	1	178	217	30.9254

#PSSM
[ : 0.33	g : 0.33	e : 0.33	
c : 0.33	e : 0.33	g : 0.16	[ : 0.16	
c : 0.33	g : 0.16	e : 0.16	[ : 0.16	d : 0.16	
c : 0.33	g : 0.16	e : 0.16	b : 0.16	d : 0.16	
" : 0.33	g : 0.16	e : 0.16	b : 0.16	d : 0.16	
" : 0.50	g : 0.16	! : 0.16	d : 0.16	
" : 0.50	! : 0.33	# : 0.16	
g : 0.33	! : 0.16	f : 0.16	" : 0.16	# : 0.16	
g : 0.33	e : 0.16	f : 0.16	d : 0.16	# : 0.16	
g : 0.33	e : 0.16	f : 0.16	d : 0.16	# : 0.16	
g : 0.33	d : 0.33	e : 0.16	f : 0.16	
g : 0.33	d : 0.33	e : 0.16	f : 0.16	
g : 0.33	e : 0.16	f : 0.16	b : 0.16	d : 0.16	
g : 0.33	u : 0.16	v : 0.16	b : 0.16	d : 0.16	
t : 0.50	v : 0.33	u : 0.16	
t : 0.50	v : 0.33	u : 0.16	
t : 0.50	v : 0.33	u : 0.16	
t : 0.50	v : 0.33	u : 0.16	
t : 0.50	v : 0.33	u : 0.16	
t : 0.50	v : 0.33	u : 0.16	
t : 0.50	v : 0.33	u : 0.16	
t : 0.50	v : 0.33	u : 0.16	
t : 0.50	v : 0.33	u : 0.16	
t : 0.50	v : 0.33	u : 0.16	
t : 0.50	v : 0.33	u : 0.16	
g : 0.33	v : 0.33	e : 0.16	d : 0.16	
g : 0.33	e : 0.16	f : 0.16	v : 0.16	d : 0.16	
g : 0.33	e : 0.16	f : 0.16	b : 0.16	d : 0.16	
g : 0.33	e : 0.16	f : 0.16	b : 0.16	d : 0.16	
g : 0.33	e : 0.16	f : 0.16	] : 0.16	3 : 0.16	
g : 0.33	4 : 0.16	f : 0.16	d : 0.16	3 : 0.16	
g : 0.33	4 : 0.16	f : 0.16	d : 0.16	3 : 0.16	
] : 0.33	4 : 0.33	d : 0.33	
c : 0.33	4 : 0.33	d : 0.33	
c : 0.33	g : 0.16	4 : 0.16	3 : 0.16	d : 0.16	
c : 0.33	g : 0.16	4 : 0.16	3 : 0.16	d : 0.16	
] : 0.50	g : 0.16	e : 0.16	3 : 0.16	
b : 0.50	g : 0.33	e : 0.16	
b : 0.50	g : 0.33	e : 0.16	

#score	190.64214048651664
#seq	6
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_UTR_m3_run2.txt

#BEAR
b[ddddqqqqqqqqdddd]bb	chr4:110685486-110685736(-)$1	250	221	242	13.6446
ffffffqqqqqqqqffffff]	chr10:102122179-102122399(+)$1	220	145	166	14.7859
ggggggqqqqqqqqggggggg	chr2:20192395-20192641(-)$1	246	116	137	15.3764
ccc[bbqqqqqqqqbbccc]e	chr12:69747011-69747242(+)$1	231	106	127	14.7183
cca[bbqqqqqqqqbb]a]cc	chr7:75616031-75616270(+)$1	239	165	186	14.9115
ffffffqqqqqqqqffffff]	chr5:179155840-179156088(+)$1	248	194	215	14.7859
gg!!bbqqqqqqqqbb22ggg	chr18:56995041-56995295(-)$1	254	156	177	15.2281
ffffffqqqqqqqqffffff]	chr5:112214146-112214415(-)$1	269	22	43	14.7859
""ddddqqqqqqqqdddd333	chr21:45878524-45878796(+)$1	272	241	262	14.4187
e[ddddqqqqqqqqddddeee	chr19:57323552-57323809(-)$1	257	131	152	13.8889
cc[cccqqqqqqqqccc]ccc	chr9:140476582-140476833(-)$1	251	186	207	15.4687
ffffffqqqqqqqqffffff:	chr6:145172240-145172498(+)$1	258	49	70	13.8202
ffffffqqqqqqqqffffff:	chr19:57324389-57324635(-)$1	246	87	108	13.8202
c[ddddqqqqqqqqddddccc	chr12:92537654-92537907(-)$1	253	132	153	14.2620
ffffffqqqqqqqqffffff]	chr4:166418916-166419151(+)$1	235	148	169	14.7859
ii[cccqqqqqqqqccc22ii	chr1:150548933-150549188(-)$1	255	196	217	15.5094
ggg[bbqqqqqqqqbb22ggg	chr16:75141757-75142004(+)$1	247	122	143	15.1395
cc[cccqqqqqqqqccc]ccc	chr10:73577000-73577252(-)$1	252	90	111	15.4687
ffddddqqqqqqqqdddd]ff	chr16:18803088-18803339(-)$1	251	11	32	14.2386
b[ddddqqqqqqqqdddd]bb	chr3:195776501-195776777(-)$1	276	56	77	13.6446
eeee[aqqqqqqqqa]eeeee	chr10:105360597-105360843(-)$1	246	78	99	13.9890
ffffbbqqqqqqqqbb4444f	chr12:31434897-31435153(-)$1	256	20	41	14.6931
!!ddddqqqqqqqqdddd22a	chr5:32355239-32355508(-)$1	269	34	55	13.9698
ffffffqqqqqqqqffffff]	chr9:117360150-117360430(+)$1	280	140	161	14.7859
Geeeeeqqqqqqqqeeeeegg	chr1:8072127-8072412(-)$1	285	94	115	13.7209
dddd[aqqqqqqqqadddd]a	chr11:62656138-62656412(+)$1	274	191	212	13.7711
g!!cccqqqqqqqqccc22gg	chr17:56082488-56082735(-)$1	247	6	27	15.6714
gg!!bbqqqqqqqqbb22ggg	chr17:73316020-73316276(-)$1	256	19	40	15.2281
ffffffqqqqqqqqffffff:	chr10:5807508-5807767(-)$1	259	224	245	13.8202
ggggggqqqqqqqqggggggg	chr2:191799863-191800104(+)$1	241	24	45	15.3764
ggggggqqqqqqqqggggggg	chr10:64936945-64937205(-)$1	260	41	62	15.3764
ee[cccqqqqqqqqccceeee	chr3:172116721-172116964(+)$1	243	108	129	14.8813
="""bbqqqqqqqqbb333==	chr5:42800453-42800682(-)$1	229	25	46	15.5152
ccc[bbqqqqqqqqbbcccff	chr19:34718640-34718940(+)$1	300	109	130	14.7618
beeeeeqqqqqqqqeeeee]b	chr13:48835641-48835908(+)$1	267	194	215	13.6075
fffcccqqqqqqqqccchhhh	chr4:88904095-88904365(+)$1	270	165	186	14.4474
gggg[aqqqqqqqqa]ggggg	chr6:24719014-24719278(-)$1	264	29	50	15.1875
dddcccqqqqqqqqccc]ddd	chr17:79801411-79801644(-)$1	233	6	27	14.2244
c[ddddqqqqqqqqdddd]cc	chr10:32299901-32300181(-)$1	280	187	208	14.4265
ggggggqqqqqqqqggggggg	chr2:216279353-216279593(-)$1	240	150	171	15.3764
d[ddddqqqqqqqqdddd333	chr5:52782048-52782299(+)$1	251	77	98	14.3461
ggggggqqqqqqqqggggggg	chr2:20192330-20192574(-)$1	244	49	70	15.3764
"""cccqqqqqqqqccc4444	chr1:236703863-236704142(+)$1	279	9	30	15.2629
======qqqqqqqq=======	chr17:4848929-4849218(-)$1	289	238	259	15.5155
gggcccqqqqqqqqccc22gg	chr17:37077756-37078048(+)$1	292	24	45	15.5036
[eeeeeqqqqqqqqeeeeeee	chr5:52781900-52782142(+)$1	242	176	197	13.8882
ggggggqqqqqqqqggggggg	chr19:49464853-49465088(+)$1	235	37	58	15.3764
ggggggqqqqqqqqggggggg	chr5:179156663-179156907(+)$1	244	61	82	15.3764
ffffffqqqqqqqqffffffF	chr1:207966878-207967161(+)$1	283	225	246	14.3526
ggggbbqqqqqqqqbb]gggg	chr17:6588085-6588340(-)$1	255	116	137	15.2606
ggggggqqqqqqqqggggggg	chr6:30692185-30692429(+)$1	244	126	147	15.3764
$$$$bbqqqqqqqqbb4444c	chr2:27422626-27422901(-)$1	275	113	134	14.0442
======qqqqqqqq=======	chr3:30735401-30735663(+)$1	262	14	35	15.5155
f[a[bbqqqqqqqqbb]a]ff	chr6:138412299-138412582(-)$1	283	185	206	15.0944
$$$$bbqqqqqqqqbb4444c	chr10:89312946-89313225(+)$1	279	120	141	14.0442
c!!cccqqqqqqqqccc22cc	chr3:71005194-71005439(-)$1	245	203	224	15.4760
a"""bbqqqqqqqqbb333a]	chr10:15254233-15254514(-)$1	281	132	153	15.2078
!eeeeeqqqqqqqqeeeeeff	chr6:32948860-32949097(+)$1	237	205	226	14.0629
bb[cccqqqqqqqqcccbb33	chr15:52842653-52842917(-)$1	264	212	233	14.2311
"eeeeeqqqqqqqqeeeeeff	chr1:23884516-23884747(-)$1	231	10	31	14.0080
cc[cccqqqqqqqqccc]ccc	chr8:38961128-38961383(+)$1	255	94	115	15.4687
ddd!!aqqqqqqqqa22dddd	chr5:132216271-132216534(-)$1	263	223	244	13.1948
$$$$bbqqqqqqqqbb22ggg	chr1:8413096-8413380(-)$1	284	77	98	14.1015
cc[cccqqqqqqqqccc]ccc	chr2:85835432-85835722(-)$1	290	183	204	15.4687
ee[cccqqqqqqqqccceeee	chr1:183905514-183905763(-)$1	249	89	110	14.8813
iiiiiiqqqqqqqqiiiiiii	chr2:85545133-85545382(-)$1	249	186	207	15.0941
ffffffqqqqqqqqffffff0	chr17:62495705-62495953(-)$1	248	171	192	14.2935
ffffffqqqqqqqqffffffd	chr21:27253292-27253570(-)$1	278	56	77	14.5397

#otherMatches

#Seq PSSM
ccugcugacaacaaagcaugg	chr4:110685486-110685736(-)$1	250	221	242	13.6446
CCUUUGUGUGUAUUCAGAGGC	chr10:102122179-102122399(+)$1	220	145	166	14.7859
GAAACUUUAGGUCUAGUUUCU	chr2:20192395-20192641(-)$1	246	116	137	15.3764
AGGAGCAAAAUAUGGCCUUUC	chr12:69747011-69747242(+)$1	231	106	127	14.7183
AUCUGGGACCUCCACCUGCAU	chr7:75616031-75616270(+)$1	239	165	186	14.9115
GGAGAUGAGUUGCAGUUUUUA	chr5:179155840-179156088(+)$1	248	194	215	14.7859
GUUUUUUUUUUCCUGAUUAUU	chr18:56995041-56995295(-)$1	254	156	177	15.2281
AAUGUUGCCUUGGAAACAUUU	chr5:112214146-112214415(-)$1	269	22	43	14.7859
GAAAGUAUCAGGUGACUUGGA	chr21:45878524-45878796(+)$1	272	241	262	14.4187
GUGUUGUGUUCAUCUAAUCUU	chr19:57323552-57323809(-)$1	257	131	152	13.8889
CGUGACUAAAAACUGUCCUGU	chr9:140476582-140476833(-)$1	251	186	207	15.4687
UAUCCAAAGAGAAAUGGAUAU	chr6:145172240-145172498(+)$1	258	49	70	13.8202
AUUUGAUUAUAUUUUUAAGUG	chr19:57324389-57324635(-)$1	246	87	108	13.8202
UUAUGGAAUUUAAACCAUGUC	chr12:92537654-92537907(-)$1	253	132	153	14.2620
AGAAUUUUUUGAGUAAUUCUA	chr4:166418916-166419151(+)$1	235	148	169	14.7859
AGAACGAAUUGAUGUGUAACU	chr1:150548933-150549188(-)$1	255	196	217	15.5094
GGGUCUGUCUUUAAAGUGUUU	chr16:75141757-75142004(+)$1	247	122	143	15.1395
AUUGGUUUUUUUCUACUUGUG	chr10:73577000-73577252(-)$1	252	90	111	15.4687
UGAUUAACUAGCUGUAAUAUA	chr16:18803088-18803339(-)$1	251	11	32	14.2386
AAUGUGUCACUACUCACAGUC	chr3:195776501-195776777(-)$1	276	56	77	13.6446
CUUUGCAUGUUUCGGGAGAGG	chr10:105360597-105360843(-)$1	246	78	99	13.9890
CCCUUCUAAUGAAUGAAACUA	chr12:31434897-31435153(-)$1	256	20	41	14.6931
UUUGUUUGCUUUUUGACACUA	chr5:32355239-32355508(-)$1	269	34	55	13.9698
CAACAUGUAUAUCAGUGUUGA	chr9:117360150-117360430(+)$1	280	140	161	14.7859
CUGUAUUAAUAAACAUACAAC	chr1:8072127-8072412(-)$1	285	94	115	13.7209
GAAGUCUUCCCUCUGCUUCUC	chr11:62656138-62656412(+)$1	274	191	212	13.7711
UACAGUUUUCCUUUAUUCAGU	chr17:56082488-56082735(-)$1	247	6	27	15.6714
UUACCUAUAAAUUAAGAAGAG	chr17:73316020-73316276(-)$1	256	19	40	15.2281
GAAGUUUUCCCUAUGACUUUA	chr10:5807508-5807767(-)$1	259	224	245	13.8202
UUAUCUUAGUGUUUGGAUGAA	chr2:191799863-191800104(+)$1	241	24	45	15.3764
GGAUGUAAAAACAAAUAUUUC	chr10:64936945-64937205(-)$1	260	41	62	15.3764
CAUAGCUAUUUUGUGCUUGAU	chr3:172116721-172116964(+)$1	243	108	129	14.8813
AUAUUGACUCAAACCAUAUUU	chr5:42800453-42800682(-)$1	229	25	46	15.5152
UCCUCCUUUCUUUUGGGGAAU	chr19:34718640-34718940(+)$1	300	109	130	14.7618
CAAAUAUAUUUAACUAUUUAG	chr13:48835641-48835908(+)$1	267	194	215	13.6075
AUGUUCAUUCUAUAGAAGAAA	chr4:88904095-88904365(+)$1	270	165	186	14.4474
CUUUUCAUUUCUCCGCAAAGC	chr6:24719014-24719278(-)$1	264	29	50	15.1875
AUGAUGUACUUUUUCAUACAU	chr17:79801411-79801644(-)$1	233	6	27	14.2244
UUAAAUGUCUUUAAAUUUUAC	chr10:32299901-32300181(-)$1	280	187	208	14.4265
UUACUAUAUUUGUUUAGUGAA	chr2:216279353-216279593(-)$1	240	150	171	15.3764
ACUGUGUCAUGUUUUAUAAUU	chr5:52782048-52782299(+)$1	251	77	98	14.3461
GAAACUUUAGGUCUAGUUUCU	chr2:20192330-20192574(-)$1	244	49	70	15.3764
AAUGGAAAACAUACUCUGCUC	chr1:236703863-236704142(+)$1	279	9	30	15.2629
UUUUUUUUCUGAAUAAAAAAG	chr17:4848929-4849218(-)$1	289	238	259	15.5155
AAUUUGCCUCUGUCCAAACAU	chr17:37077756-37078048(+)$1	292	24	45	15.5036
AGGUCUACUGGAUGAGGCCCA	chr5:52781900-52782142(+)$1	242	176	197	13.8882
UGAGGCCCCCAGCUGCCUUGG	chr19:49464853-49465088(+)$1	235	37	58	15.3764
AAAGUACAGAAAAAUACUUUG	chr5:179156663-179156907(+)$1	244	61	82	15.3764
AAUUUGGGUAUGAACAGAUUG	chr1:207966878-207967161(+)$1	283	225	246	14.3526
UGCUCUGGAAGAGAGGCAGUA	chr17:6588085-6588340(-)$1	255	116	137	15.2606
ugccuggcacauaguaggcgc	chr6:30692185-30692429(+)$1	244	126	147	15.3764
UAUCUGUCUACCUCCAUUCUG	chr2:27422626-27422901(-)$1	275	113	134	14.0442
AAGGGAAAGUUUUAUUCUUUU	chr3:30735401-30735663(+)$1	262	14	35	15.5155
UGGAUUGAAAGAUGGACUGGG	chr6:138412299-138412582(-)$1	283	185	206	15.0944
CUUUCUUUGUAAAUAGUUCUG	chr10:89312946-89313225(+)$1	279	120	141	14.0442
AUACUAAAAAAAAAUAGCUUU	chr3:71005194-71005439(-)$1	245	203	224	15.4760
GUUUGCCUUUUUUUGUUGUCG	chr10:15254233-15254514(-)$1	281	132	153	15.2078
AAAUAAAGAAAAUAUUAUUCA	chr6:32948860-32949097(+)$1	237	205	226	14.0629
ACUAAUAUUCUACAAUUGUUU	chr15:52842653-52842917(-)$1	264	212	233	14.2311
AAGAGCCAGAGCUAGCUCUGG	chr1:23884516-23884747(-)$1	231	10	31	14.0080
UUUUAACCUUCUUUUUGCAAA	chr8:38961128-38961383(+)$1	255	94	115	15.4687
ACCUAAUAUCUUUUUGUGGUA	chr5:132216271-132216534(-)$1	263	223	244	13.1948
UUCUAGUUUUUUUUCUUUCAU	chr1:8413096-8413380(-)$1	284	77	98	14.1015
UGUGUACCUCCAGCUGCUCAG	chr2:85835432-85835722(-)$1	290	183	204	15.4687
AGAGAAUUUUUUUUUUCCUGU	chr1:183905514-183905763(-)$1	249	89	110	14.8813
GGUUUUGUUGAACAGAAACCA	chr2:85545133-85545382(-)$1	249	186	207	15.0941
GAAGGCAAUGCAUGGCCUUCC	chr17:62495705-62495953(-)$1	248	171	192	14.2935
UUAAAGUUAAACAUUUUUAAG	chr21:27253292-27253570(-)$1	278	56	77	14.5397

#DB
(.((((........)))).))	chr4:110685486-110685736(-)$1	1	221	242	13.6446
((((((........)))))).	chr10:102122179-102122399(+)$1	1	145	166	14.7859
((((((........)))))))	chr2:20192395-20192641(-)$1	1	116	137	15.3764
(((.((........))))).)	chr12:69747011-69747242(+)$1	1	106	127	14.7183
(((.((........)).).))	chr7:75616031-75616270(+)$1	1	165	186	14.9115
((((((........)))))).	chr5:179155840-179156088(+)$1	1	194	215	14.7859
((..((........))..)))	chr18:56995041-56995295(-)$1	1	156	177	15.2281
((((((........)))))).	chr5:112214146-112214415(-)$1	1	22	43	14.7859
..((((........))))...	chr21:45878524-45878796(+)$1	1	241	262	14.4187
(.((((........)))))))	chr19:57323552-57323809(-)$1	1	131	152	13.8889
((.(((........))).)))	chr9:140476582-140476833(-)$1	1	186	207	15.4687
((((((........)))))).	chr6:145172240-145172498(+)$1	1	49	70	13.8202
((((((........)))))).	chr19:57324389-57324635(-)$1	1	87	108	13.8202
(.((((........)))))))	chr12:92537654-92537907(-)$1	1	132	153	14.2620
((((((........)))))).	chr4:166418916-166419151(+)$1	1	148	169	14.7859
((.(((........)))..))	chr1:150548933-150549188(-)$1	1	196	217	15.5094
(((.((........))..)))	chr16:75141757-75142004(+)$1	1	122	143	15.1395
((.(((........))).)))	chr10:73577000-73577252(-)$1	1	90	111	15.4687
((((((........)))).))	chr16:18803088-18803339(-)$1	1	11	32	14.2386
(.((((........)))).))	chr3:195776501-195776777(-)$1	1	56	77	13.6446
((((.(........).)))))	chr10:105360597-105360843(-)$1	1	78	99	13.9890
((((((........))....)	chr12:31434897-31435153(-)$1	1	20	41	14.6931
..((((........))))..)	chr5:32355239-32355508(-)$1	1	34	55	13.9698
((((((........)))))).	chr9:117360150-117360430(+)$1	1	140	161	14.7859
((((((........)))))((	chr1:8072127-8072412(-)$1	1	94	115	13.7209
((((.(........))))).)	chr11:62656138-62656412(+)$1	1	191	212	13.7711
(..(((........)))..))	chr17:56082488-56082735(-)$1	1	6	27	15.6714
((..((........))..)))	chr17:73316020-73316276(-)$1	1	19	40	15.2281
((((((........)))))).	chr10:5807508-5807767(-)$1	1	224	245	13.8202
((((((........)))))))	chr2:191799863-191800104(+)$1	1	24	45	15.3764
((((((........)))))))	chr10:64936945-64937205(-)$1	1	41	62	15.3764
((.(((........)))))))	chr3:172116721-172116964(+)$1	1	108	129	14.8813
(...((........))...))	chr5:42800453-42800682(-)$1	1	25	46	15.5152
(((.((........)))))((	chr19:34718640-34718940(+)$1	1	109	130	14.7618
((((((........))))).)	chr13:48835641-48835908(+)$1	1	194	215	13.6075
)))(((........)))((((	chr4:88904095-88904365(+)$1	1	165	186	14.4474
((((.(........).)))))	chr6:24719014-24719278(-)$1	1	29	50	15.1875
((((((........))).)))	chr17:79801411-79801644(-)$1	1	6	27	14.2244
(.((((........)))).))	chr10:32299901-32300181(-)$1	1	187	208	14.4265
((((((........)))))))	chr2:216279353-216279593(-)$1	1	150	171	15.3764
(.((((........))))...	chr5:52782048-52782299(+)$1	1	77	98	14.3461
((((((........)))))))	chr2:20192330-20192574(-)$1	1	49	70	15.3764
...(((........)))....	chr1:236703863-236704142(+)$1	1	9	30	15.2629
((((((........)))))))	chr17:4848929-4849218(-)$1	1	238	259	15.5155
((((((........)))..))	chr17:37077756-37078048(+)$1	1	24	45	15.5036
.(((((........)))))))	chr5:52781900-52782142(+)$1	1	176	197	13.8882
((((((........)))))))	chr19:49464853-49465088(+)$1	1	37	58	15.3764
((((((........)))))))	chr5:179156663-179156907(+)$1	1	61	82	15.3764
((((((........)))))))	chr1:207966878-207967161(+)$1	1	225	246	14.3526
((((((........)).))))	chr17:6588085-6588340(-)$1	1	116	137	15.2606
((((((........)))))))	chr6:30692185-30692429(+)$1	1	126	147	15.3764
....((........))....)	chr2:27422626-27422901(-)$1	1	113	134	14.0442
((((((........)))))))	chr3:30735401-30735663(+)$1	1	14	35	15.5155
(.(.((........)).).))	chr6:138412299-138412582(-)$1	1	185	206	15.0944
....((........))....)	chr10:89312946-89313225(+)$1	1	120	141	14.0442
(..(((........)))..))	chr3:71005194-71005439(-)$1	1	203	224	15.4760
(...((........))...).	chr10:15254233-15254514(-)$1	1	132	153	15.2078
.(((((........)))))))	chr6:32948860-32949097(+)$1	1	205	226	14.0629
((.(((........)))))..	chr15:52842653-52842917(-)$1	1	212	233	14.2311
.(((((........)))))))	chr1:23884516-23884747(-)$1	1	10	31	14.0080
((.(((........))).)))	chr8:38961128-38961383(+)$1	1	94	115	15.4687
(((..(........)..))))	chr5:132216271-132216534(-)$1	1	223	244	13.1948
....((........))..)))	chr1:8413096-8413380(-)$1	1	77	98	14.1015
((.(((........))).)))	chr2:85835432-85835722(-)$1	1	183	204	15.4687
((.(((........)))))))	chr1:183905514-183905763(-)$1	1	89	110	14.8813
((((((........)))))))	chr2:85545133-85545382(-)$1	1	186	207	15.0941
((((((........)))))).	chr17:62495705-62495953(-)$1	1	171	192	14.2935
((((((........)))))))	chr21:27253292-27253570(-)$1	1	56	77	14.5397

#PSSM
f : 0.22	g : 0.22	c : 0.14	b : 0.05	e : 0.05	d : 0.05	" : 0.04	= : 0.04	$ : 0.04	i : 0.02	! : 0.02	G : 0.01	[ : 0.01	a : 0.01	
f : 0.20	g : 0.20	e : 0.11	[ : 0.10	c : 0.10	" : 0.05	! : 0.04	d : 0.04	$ : 0.04	i : 0.02	= : 0.02	b : 0.01	
f : 0.19	d : 0.17	g : 0.17	[ : 0.11	e : 0.08	! : 0.05	" : 0.04	$ : 0.04	c : 0.02	a : 0.02	= : 0.02	i : 0.01	
c : 0.20	f : 0.17	d : 0.14	g : 0.14	e : 0.08	[ : 0.07	! : 0.04	$ : 0.04	" : 0.02	= : 0.02	i : 0.01	
b : 0.20	c : 0.20	f : 0.16	d : 0.13	g : 0.11	e : 0.07	[ : 0.04	= : 0.02	! : 0.01	i : 0.01	
b : 0.20	c : 0.20	f : 0.16	d : 0.13	g : 0.11	e : 0.07	a : 0.05	= : 0.02	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
b : 0.20	c : 0.20	f : 0.16	d : 0.13	g : 0.11	e : 0.07	a : 0.05	= : 0.02	i : 0.01	
b : 0.20	c : 0.20	f : 0.16	d : 0.14	g : 0.11	e : 0.07	] : 0.02	= : 0.02	2 : 0.01	i : 0.01	
c : 0.23	f : 0.16	d : 0.14	g : 0.13	e : 0.08	2 : 0.07	] : 0.04	4 : 0.04	3 : 0.02	= : 0.02	i : 0.01	
d : 0.16	f : 0.16	g : 0.14	2 : 0.11	e : 0.11	] : 0.07	4 : 0.05	c : 0.02	a : 0.02	3 : 0.02	= : 0.02	h : 0.01	b : 0.01	i : 0.01	
g : 0.20	f : 0.16	e : 0.13	c : 0.10	] : 0.08	2 : 0.07	3 : 0.05	4 : 0.05	d : 0.04	= : 0.02	h : 0.01	b : 0.01	i : 0.01	
g : 0.25	f : 0.23	c : 0.11	e : 0.07	4 : 0.05	] : 0.04	3 : 0.04	= : 0.04	b : 0.02	i : 0.02	d : 0.02	2 : 0.01	h : 0.01	a : 0.01	
g : 0.25	c : 0.14	] : 0.08	e : 0.08	f : 0.08	b : 0.04	3 : 0.04	: : 0.04	= : 0.04	d : 0.04	i : 0.02	a : 0.02	h : 0.01	4 : 0.01	F : 0.01	0 : 0.01	

#score	999.8976949876637
#seq	68
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_transcript_m3_run1.txt

#BEAR
ccc[ddddqqqqqqqqdddd]cccH	chr11:105968851-105969165(+)$1	314	162	187	15.8853
iiiiiiiiqqqqqqqqiiiiiiiii	chr15:69071197-69071433(-)$1	236	41	66	15.4027
cc!!ddddqqqqqqqqdddd]ccc:	chr6:42046147-42046427(+)$1	280	159	184	15.8413
!a[eeeeeqqqqqqqqeeeee]a]f	chr22:20111488-20111767(+)$1	279	24	49	16.0478
d!!ccc[aqqqqqqqqa]ccc333d	chr9:123579065-123579305(-)$1	240	206	231	15.9011
feeeee[aqqqqqqqqaeeeee22f	chr1:36386800-36387079(+)$1	279	109	134	14.7829
===cccbbqqqqqqqqbb]ccc]==	chr12:56386658-56386919(+)$1	261	196	221	15.1368
b!!ccc[aqqqqqqqqa]cccbbff	chr7:137562932-137563186(-)$1	254	144	169	14.7186
da[a[a[aqqqqqqqqa]a]a]a]d	chr7:158656178-158656409(+)$1	231	127	152	15.7136
"a[eeeeeqqqqqqqqeeeee]aee	chr17:33337855-33338130(-)$1	275	179	204	15.7620
ee[eeeeeqqqqqqqqeeeeeeeee	chr19:18679818-18680099(+)$1	281	127	152	15.0552
f[ccccccqqqqqqqqccc]ccc]f	chr16:1427989-1428246(-)$1	257	76	101	15.8766
gggg[cccqqqqqqqqccc]ggggg	chr11:375087-375481(+)$1	394	142	167	15.9591
""bbddddqqqqqqqqdddd]bbee	chr16:88557075-88557322(+)$1	247	183	208	15.2099
fffff[bbqqqqqqqqbb]ffffff	chr1:167395152-167395423(+)$1	271	66	91	13.8060
ccc[ddddrrrrrrrrrdddd]ccc	chr18:2804359-2804616(+)$1	257	162	187	10.2855
"gggggggqqqqqqqqggggggg33	chr16:88961277-88961539(-)$1	262	34	59	15.4129
ecccddddqqqqqqqqdddd22ccc	chr1:167510955-167511213(-)$1	258	43	68	15.9953
bb!!ddddqqqqqqqqdddd22bb:	chr1:145442051-145442271(+)$1	220	162	187	14.4859
c"""ddddqqqqqqqqdddd333cc	chr11:27517352-27517619(-)$1	267	33	58	16.8432
[a[eeeeeqqqqqqqqeeeee]a]d	chr19:44126955-44127215(-)$1	260	61	86	16.0035
!!bb[cccqqqqqqqqccc]bbeee	chr5:133940744-133941025(-)$1	281	147	172	14.8674
g[bb[cccqqqqqqqqccc]bb333	chr5:140894830-140895065(-)$1	235	177	202	15.4236
ccc!!cccqqqqqqqqcccccc]cc	chr16:88798224-88798474(+)$1	250	75	100	15.9914
[a!!ddddrrrrrrrrrdddd]aff	chr9:100884716-100884976(-)$1	260	37	62	10.3997
========qqqqqqqq=========	chr17:55761732-55762023(+)$1	291	186	211	15.9604
$$$$ddddqqqqqqqqddddccc::	chr16:90071473-90071775(-)$1	302	236	261	13.8633
d[bbddddqqqqqqqqdddd]bb]d	chr16:69496999-69497256(+)$1	257	131	156	15.2727
ebb[a[bbqqqqqqqqbba]bb333	chr16:89039765-89040002(-)$1	237	166	191	14.5132
ff[eeeeeqqqqqqqqeeeee22ff	chr2:219139930-219140180(-)$1	250	16	41	15.0752
dd!!ddddqqqqqqqqdddd4444d	chr2:10336744-10337048(+)$1	304	154	179	16.3531
fffff[bbqqqqqqqqbb]ffffff	chr1:19544692-19544944(-)$1	252	22	47	13.8060
gggeeeeeqqqqqqqqeeeee]ggg	chr15:44063588-44063838(+)$1	250	212	237	15.6390
ccc[ddddrrrrrrrrrdddd]ccc	chr20:60709624-60709903(+)$1	279	129	154	10.2855
gggg[cccqqqqqqqqcccgggggg	chr5:148874899-148875109(-)$1	210	98	123	15.8401
ccceeeeeqqqqqqqqeeeee]ccc	chr6:42174782-42175024(-)$1	242	151	176	15.7199
ddd[ddddqqqqqqqqdddddddd7	chr16:85645791-85646027(+)$1	236	171	196	14.6822
eeeee[bbqqqqqqqqbb]eeeee]	chr9:139249995-139250264(+)$1	269	47	72	14.4484
eeeeddddqqqqqqqqdddd::ccc	chr11:118620072-118620310(-)$1	238	38	63	14.1366
eeeeecccqqqqqqqqccc22eeee	chr11:93495465-93495718(+)$1	253	135	160	14.7622
ff[bb!!aqqqqqqqqa22bb333f	chr1:205685029-205685277(-)$1	248	166	191	14.1578
[ccc[cccqqqqqqqqccc]ccc]b	chr9:33441399-33441635(-)$1	236	85	110	15.9989
ccc[ddddqqqqqqqqdddd]ccc2	chr12:56507029-56507276(+)$1	247	137	162	16.3612
:bbeeeeeqqqqqqqqeeeee]bb:	chr16:81660754-81661025(+)$1	271	155	180	12.7994
eeee[cccqqqqqqqqccc]eeeee	chr19:3692991-3693279(-)$1	288	53	78	15.1816
gg!!ddddqqqqqqqqddddggggg	chr16:70406474-70406760(+)$1	286	118	143	16.5234
hh!!ddddqqqqqqqqdddd22hhh	chr16:88583199-88583464(+)$1	265	24	49	15.4287
ddddd[bbqqqqqqqqbb22dddd2	chrX:153671494-153671730(+)$1	236	123	148	13.3913
eeffffffqqqqqqqqffffff]ee	chr17:37562085-37562331(-)$1	246	178	203	13.4987
)))))cccqqqqqqqqccceeeeeg	chr1:12072590-12072835(+)$1	245	193	218	12.9308
[ccc[cccqqqqqqqqccc]ccc]c	chr9:140476509-140476782(-)$1	273	133	158	16.2506
iiiiiiiiqqqqqqqqiiiiiiiii	chr5:126172493-126172782(+)$1	289	103	128	15.4027
ccc[ddddqqqqqqqqdddd]ccc:	chr1:193058763-193059016(+)$1	253	141	166	15.6483
[ccc!!bbqqqqqqqqbb22ccc22	chr17:55758119-55758396(+)$1	277	171	196	14.7882
d"""ddddqqqqqqqqdddd4444d	chr11:75283208-75283415(+)$1	207	54	79	16.3960
dd[eeeeeqqqqqqqqeeeee]ddd	chr12:118588019-118588297(-)$1	278	14	39	15.1054
iiii!!bbqqqqqqqqbb]iiiiii	chrX:77383634-77383881(+)$1	247	6	31	15.2646
#ccc!!bbqqqqqqqqbb22ccc22	chr1:12073320-12073583(+)$1	263	158	183	14.6804

#otherMatches

#Seq PSSM
uaccuguuuuCGUUUUAGCAAGUAG	chr11:105968851-105969165(+)$1	314	162	187	15.8853
UUAGAAGUGACGUGUAAUUUCUGAA	chr15:69071197-69071433(-)$1	236	41	66	15.4027
UUGAGCAGAUGCAUCACUGUGAAGA	chr6:42046147-42046427(+)$1	280	159	184	15.8413
GUGGUGGUCUGCCUAUGCCAUGGGC	chr22:20111488-20111767(+)$1	279	24	49	16.0478
ACAUAUGCAUAAAUCAGGAUACCAU	chr9:123579065-123579305(-)$1	240	206	231	15.9011
GAGACAUGGGGUUUGGCUGUCUUGC	chr1:36386800-36387079(+)$1	279	109	134	14.7829
GGAGGGACAGUUUCUGGUACCCAUC	chr12:56386658-56386919(+)$1	261	196	221	15.1368
UACCUGCUGCAACUGAACCAGACUG	chr7:137562932-137563186(-)$1	254	144	169	14.7186
CCGGGUGUGUUUGGGGGGGGCGGUG	chr7:158656178-158656409(+)$1	231	127	152	15.7136
AUGUUAAGACAGAGCACUUAAGAGC	chr17:33337855-33338130(-)$1	275	179	204	15.7620
UCUGAGAUAGGUAGAAGUCUUGAGA	chr19:18679818-18680099(+)$1	281	127	152	15.0552
AAGGAUGUAGUGGGGGGCAUUCCAU	chr16:1427989-1428246(-)$1	257	76	101	15.8766
AGCAUGGUGGGGUCUGGCCCUGCUC	chr11:375087-375481(+)$1	394	142	167	15.9591
CCAGCACAGCAGAUGAUGUGACUUG	chr16:88557075-88557322(+)$1	247	183	208	15.2099
AAGGAACUUUUUACAUGGAUCUUUU	chr1:167395152-167395423(+)$1	271	66	91	13.8060
AAUGUUCUAUCAGUAAAAGAAGGUU	chr18:2804359-2804616(+)$1	257	162	187	10.2855
GGGGGGCCGGCAUGUAGGUCCCCAC	chr16:88961277-88961539(-)$1	262	34	59	15.4129
UGUGUUCUUUAUUCCUAGAAGCCAC	chr1:167510955-167511213(-)$1	258	43	68	15.9953
GUGACUUCAAACCCAAGGAGGAACU	chr1:145442051-145442271(+)$1	220	162	187	14.4859
ACUUAAUGAUUAAUUACAUUUCUUA	chr11:27517352-27517619(-)$1	267	33	58	16.8432
GUGGGGAGGGGGUCAGUUUCUGGGA	chr19:44126955-44127215(-)$1	260	61	86	16.0035
CAUUGAUAAUAUAACCUAUGAAGCA	chr5:133940744-133941025(-)$1	281	147	172	14.8674
UGGCGCUUGUGUAUAAAGGGGCAAG	chr5:140894830-140895065(-)$1	235	177	202	15.4236
CGGCCAUCAGGAAGCAGAUCUGGGG	chr16:88798224-88798474(+)$1	250	75	100	15.9914
acgagguaaagaaguaguaccagau	chr9:100884716-100884976(-)$1	260	37	62	10.3997
AAGUAUAAUUUUAUAUUUGUAUUUU	chr17:55761732-55762023(+)$1	291	186	211	15.9604
ACCUGCUCCCACUUCUGAGCCACCC	chr16:90071473-90071775(-)$1	302	236	261	13.8633
UCCUCCCUUUCAAGCUAGGGCAGCA	chr16:69496999-69497256(+)$1	257	131	156	15.2727
ggaaguccgaaacuaaggcgucagA	chr16:89039765-89040002(-)$1	237	166	191	14.5132
UCUCCCUUCCAAGCUAGAGGGCUGG	chr2:219139930-219140180(-)$1	250	16	41	15.0752
GGGAGGCCAGAGGGAGGGCCGCAGC	chr2:10336744-10337048(+)$1	304	154	179	16.3531
uuuauuuuuaguuuuuaauauaaau	chr1:19544692-19544944(-)$1	252	22	47	13.8060
agcuuucuucagugauggaaaugcu	chr15:44063588-44063838(+)$1	250	212	237	15.6390
UGGAUCAUGUUGUAUAAGUGAACCA	chr20:60709624-60709903(+)$1	279	129	154	10.2855
UUUUUCUCUGACCCAUGAGAAAGGA	chr5:148874899-148875109(-)$1	210	98	123	15.8401
UUAGGAGAUGUCUGCUUUUCCAUGA	chr6:42174782-42175024(-)$1	242	151	176	15.7199
CAUUCCAGUCAAGUGCCUGGGUGAG	chr16:85645791-85646027(+)$1	236	171	196	14.6822
GGGUCUCAGAAGUGUGUGUGGCCUG	chr9:139249995-139250264(+)$1	269	47	72	14.4484
ACAGACUUAAAAUGGAAAGUAUUAC	chr11:118620072-118620310(-)$1	238	38	63	14.1366
CUUCUGGUGAAGUUAAACCAUAGAA	chr11:93495465-93495718(+)$1	253	135	160	14.7622
UUCUCCACUUUUUAUUGAUGAUUUA	chr1:205685029-205685277(-)$1	248	166	191	14.1578
GAUAGAUAUGUGUUUCUGUGUAUGU	chr9:33441399-33441635(-)$1	236	85	110	15.9989
UCAGAUUGUUUUUAUUCAGUGUGGC	chr12:56507029-56507276(+)$1	247	137	162	16.3612
uucuccucuguggaauggggaugau	chr16:81660754-81661025(+)$1	271	155	180	12.7994
UGCUGCUGAAGGUUUCCGGGAGUGG	chr19:3692991-3693279(-)$1	288	53	78	15.1816
GGCUGGGCCUGGUCUUGCCUUCUCU	chr16:70406474-70406760(+)$1	286	118	143	16.5234
GGGUGCAGAUGCGAUGCUGUGACCC	chr16:88583199-88583464(+)$1	265	24	49	15.4287
UACUUGCUGAGAGAAAAGAAAAGUG	chrX:153671494-153671730(+)$1	236	123	148	13.3913
CCUUUGUGUGUUAUGUCGUAAGUGG	chr17:37562085-37562331(-)$1	246	178	203	13.4987
CCCUUGUCUUUAUGCUGAUGUUGAG	chr1:12072590-12072835(+)$1	245	193	218	12.9308
CACGUGACUAAAAACUGUCCUGUUG	chr9:140476509-140476782(-)$1	273	133	158	16.2506
UGGAGGGAGGGAAGGGUUUCUCUAU	chr5:126172493-126172782(+)$1	289	103	128	15.4027
AAUUUUAUGAACAUAAAUGAUAUUU	chr1:193058763-193059016(+)$1	253	141	166	15.6483
UAAGCCUGCAUUAAUACAACCUUUC	chr17:55758119-55758396(+)$1	277	171	196	14.7882
GUUCCCGUGUGCCUGAGCGGACCUU	chr11:75283208-75283415(+)$1	207	54	79	16.3960
AAGUUUUAUUAAAGAUUGAAAAUUU	chr12:118588019-118588297(-)$1	278	14	39	15.1054
CUAUGUGCUUAAAGACGUGAUAGAG	chrX:77383634-77383881(+)$1	247	6	31	15.2646
UGUAUUUAAGGUGAUGUAUUUGCUU	chr1:12073320-12073583(+)$1	263	158	183	14.6804

#DB
(((.((((........)))).)))(	chr11:105968851-105969165(+)$1	1	162	187	15.8853
((((((((........)))))))))	chr15:69071197-69071433(-)$1	1	41	66	15.4027
((..((((........)))).))).	chr6:42046147-42046427(+)$1	1	159	184	15.8413
.(.(((((........))))).).)	chr22:20111488-20111767(+)$1	1	24	49	16.0478
(..(((.(........).)))...)	chr9:123579065-123579305(-)$1	1	206	231	15.9011
((((((.(........))))))..)	chr1:36386800-36387079(+)$1	1	109	134	14.7829
((((((((........)).))).))	chr12:56386658-56386919(+)$1	1	196	221	15.1368
(..(((.(........).)))))))	chr7:137562932-137563186(-)$1	1	144	169	14.7186
((.(.(.(........).).).).)	chr7:158656178-158656409(+)$1	1	127	152	15.7136
.(.(((((........))))).)))	chr17:33337855-33338130(-)$1	1	179	204	15.7620
((.(((((........)))))))))	chr19:18679818-18680099(+)$1	1	127	152	15.0552
(.((((((........))).))).)	chr16:1427989-1428246(-)$1	1	76	101	15.8766
((((.(((........))).)))))	chr11:375087-375481(+)$1	1	142	167	15.9591
..((((((........)))).))))	chr16:88557075-88557322(+)$1	1	183	208	15.2099
(((((.((........)).))))))	chr1:167395152-167395423(+)$1	1	66	91	13.8060
(((.((((.........)))).)))	chr18:2804359-2804616(+)$1	1	162	187	10.2855
.(((((((........)))))))..	chr16:88961277-88961539(-)$1	1	34	59	15.4129
((((((((........))))..)))	chr1:167510955-167511213(-)$1	1	43	68	15.9953
((..((((........))))..)).	chr1:145442051-145442271(+)$1	1	162	187	14.4859
(...((((........))))...))	chr11:27517352-27517619(-)$1	1	33	58	16.8432
.(.(((((........))))).).)	chr19:44126955-44127215(-)$1	1	61	86	16.0035
..((.(((........))).)))))	chr5:133940744-133941025(-)$1	1	147	172	14.8674
(.((.(((........))).))...	chr5:140894830-140895065(-)$1	1	177	202	15.4236
(((..(((........)))))).))	chr16:88798224-88798474(+)$1	1	75	100	15.9914
.(..((((.........)))).)))	chr9:100884716-100884976(-)$1	1	37	62	10.3997
((((((((........)))))))))	chr17:55761732-55762023(+)$1	1	186	211	15.9604
....((((........)))))))..	chr16:90071473-90071775(-)$1	1	236	261	13.8633
(.((((((........)))).)).)	chr16:69496999-69497256(+)$1	1	131	156	15.2727
(((.(.((........))).))...	chr16:89039765-89040002(-)$1	1	166	191	14.5132
((.(((((........)))))..))	chr2:219139930-219140180(-)$1	1	16	41	15.0752
((..((((........))))....)	chr2:10336744-10337048(+)$1	1	154	179	16.3531
(((((.((........)).))))))	chr1:19544692-19544944(-)$1	1	22	47	13.8060
((((((((........))))).)))	chr15:44063588-44063838(+)$1	1	212	237	15.6390
(((.((((.........)))).)))	chr20:60709624-60709903(+)$1	1	129	154	10.2855
((((.(((........)))))))))	chr5:148874899-148875109(-)$1	1	98	123	15.8401
((((((((........))))).)))	chr6:42174782-42175024(-)$1	1	151	176	15.7199
(((.((((........)))))))).	chr16:85645791-85646027(+)$1	1	171	196	14.6822
(((((.((........)).))))).	chr9:139249995-139250264(+)$1	1	47	72	14.4484
))))((((........))))..(((	chr11:118620072-118620310(-)$1	1	38	63	14.1366
((((((((........)))..))))	chr11:93495465-93495718(+)$1	1	135	160	14.7622
((.((..(........)..))...)	chr1:205685029-205685277(-)$1	1	166	191	14.1578
.(((.(((........))).))).)	chr9:33441399-33441635(-)$1	1	85	110	15.9989
(((.((((........)))).))).	chr12:56507029-56507276(+)$1	1	137	162	16.3612
.(((((((........))))).)).	chr16:81660754-81661025(+)$1	1	155	180	12.7994
((((.(((........))).)))))	chr19:3692991-3693279(-)$1	1	53	78	15.1816
((..((((........)))))))))	chr16:70406474-70406760(+)$1	1	118	143	16.5234
((..((((........))))..)))	chr16:88583199-88583464(+)$1	1	24	49	15.4287
(((((.((........))..)))).	chrX:153671494-153671730(+)$1	1	123	148	13.3913
((((((((........)))))).))	chr17:37562085-37562331(-)$1	1	178	203	13.4987
.....(((........)))))))))	chr1:12072590-12072835(+)$1	1	193	218	12.9308
.(((.(((........))).))).)	chr9:140476509-140476782(-)$1	1	133	158	16.2506
((((((((........)))))))))	chr5:126172493-126172782(+)$1	1	103	128	15.4027
(((.((((........)))).))).	chr1:193058763-193059016(+)$1	1	141	166	15.6483
.(((..((........))..)))..	chr17:55758119-55758396(+)$1	1	171	196	14.7882
(...((((........))))....)	chr11:75283208-75283415(+)$1	1	54	79	16.3960
((.(((((........))))).)))	chr12:118588019-118588297(-)$1	1	14	39	15.1054
((((..((........)).))))))	chrX:77383634-77383881(+)$1	1	6	31	15.2646
.(((..((........))..)))..	chr1:12073320-12073583(+)$1	1	158	183	14.6804

#PSSM
c : 0.15	d : 0.13	e : 0.13	f : 0.10	g : 0.08	[ : 0.08	i : 0.05	" : 0.05	! : 0.03	= : 0.03	b : 0.03	$ : 0.01	: : 0.01	h : 0.01	) : 0.01	# : 0.01	
c : 0.22	e : 0.12	a : 0.08	g : 0.08	f : 0.06	d : 0.06	i : 0.05	! : 0.05	[ : 0.05	" : 0.05	b : 0.05	= : 0.03	$ : 0.01	h : 0.01	) : 0.01	
c : 0.22	! : 0.13	[ : 0.13	b : 0.10	e : 0.08	g : 0.06	i : 0.05	f : 0.05	= : 0.03	" : 0.03	d : 0.03	$ : 0.01	) : 0.01	
e : 0.24	c : 0.15	[ : 0.12	! : 0.12	b : 0.08	i : 0.05	g : 0.05	f : 0.05	" : 0.03	a : 0.01	= : 0.01	$ : 0.01	d : 0.01	) : 0.01	
d : 0.34	e : 0.20	[ : 0.13	c : 0.06	! : 0.06	f : 0.05	i : 0.03	g : 0.01	= : 0.01	a : 0.01	b : 0.01	) : 0.01	
d : 0.32	c : 0.24	e : 0.17	[ : 0.08	! : 0.06	i : 0.03	a : 0.01	g : 0.01	= : 0.01	f : 0.01	
d : 0.32	c : 0.18	e : 0.15	b : 0.15	[ : 0.06	i : 0.03	g : 0.01	= : 0.01	! : 0.01	f : 0.01	
d : 0.32	c : 0.18	e : 0.15	b : 0.15	a : 0.08	i : 0.03	g : 0.01	= : 0.01	f : 0.01	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
d : 0.27	c : 0.18	e : 0.15	b : 0.15	a : 0.08	r : 0.05	i : 0.03	g : 0.01	= : 0.01	f : 0.01	
d : 0.32	c : 0.18	e : 0.17	b : 0.15	] : 0.05	i : 0.03	g : 0.01	= : 0.01	2 : 0.01	f : 0.01	
d : 0.32	c : 0.22	e : 0.17	] : 0.08	2 : 0.06	i : 0.03	a : 0.03	g : 0.01	= : 0.01	f : 0.01	
d : 0.32	e : 0.20	] : 0.15	c : 0.06	2 : 0.06	i : 0.05	f : 0.05	g : 0.03	= : 0.01	b : 0.01	
e : 0.22	c : 0.17	] : 0.10	d : 0.08	g : 0.06	2 : 0.06	b : 0.06	i : 0.05	f : 0.05	4 : 0.03	a : 0.01	3 : 0.01	= : 0.01	: : 0.01	
c : 0.20	] : 0.18	e : 0.10	b : 0.10	g : 0.06	2 : 0.06	i : 0.05	3 : 0.05	f : 0.05	4 : 0.03	d : 0.03	= : 0.01	: : 0.01	
c : 0.25	e : 0.10	a : 0.08	3 : 0.08	b : 0.08	g : 0.08	i : 0.05	] : 0.05	d : 0.05	2 : 0.03	f : 0.03	4 : 0.03	= : 0.01	h : 0.01	
c : 0.18	e : 0.15	] : 0.12	3 : 0.08	f : 0.08	g : 0.06	i : 0.05	2 : 0.05	d : 0.05	= : 0.03	b : 0.03	4 : 0.03	: : 0.01	h : 0.01	
f : 0.15	c : 0.13	d : 0.12	e : 0.12	: : 0.08	g : 0.08	2 : 0.06	i : 0.05	3 : 0.05	= : 0.03	H : 0.01	7 : 0.01	] : 0.01	b : 0.01	h : 0.01	

#score	866.9761684162451
#seq	58
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_UTR_m1_run1.txt

#BEAR
iiiiiiiii####bbmmmmbb4444iiiiiiii	chr17:72764235-72764440(+)$1	205	42	75	14.9177
eee[ggggggg[cccnnnnncccggggggg]ee	chr11:18422283-18422588(+)$1	305	27	60	11.0377
dda[eeeee"""ccclllccc]eeeee]a]ddd	chr11:1775137-1775404(-)$1	267	71	104	11.5900
hhhhh[ccc####ccclllccc4444ccchhhh	chr2:220086905-220087181(-)$1	276	232	265	12.8958
!!ggggggg####ccclllccc4444ggggggg	chr1:19211882-19212153(-)$1	271	160	193	14.7310
ffff[cccgggggggmmmmggggggg]ccc333	chr12:46756722-46756971(-)$1	249	110	143	11.5125
gggg:ccc[bb[cccmmmmccc]bb]ccccccd	chr10:5855073-5855311(-)$1	238	115	148	12.4874
:ggggggg####cccmmmmccc22gggggggDD	chr2:9770492-9770749(-)$1	257	79	112	12.6570
ee"""dddd!!ddddmmmmdddd22dddd333e	chr3:186338574-186338841(+)$1	267	134	167	11.2247
ggggggg####eeeeemmmmeeeeeggggggg]	chr15:72492737-72492999(-)$1	262	216	249	10.9002
!!ffffff####ddddmmmmdddd22ffffffd	chr17:79268861-79269128(-)$1	267	167	200	10.6521
========="""ddddllldddd333=======	chr11:62397636-62397843(-)$1	207	44	77	14.4970
dd[ccc!!ccc[cccmmmmcccccc]ccc]ddd	chr6:29910215-29910454(+)$1	239	32	65	13.7305
a[iiiiiiiii[ccclllccciiiiiiiii]a3	chr6:31830443-31830696(-)$1	253	182	215	13.3777
D==========[ccclllccc22==========	chr8:144103005-144103341(+)$1	336	295	328	13.0877
c$$$$$ccc"""cccmmmmccc]ccc4444ccc	chr1:161192159-161192394(-)$1	235	12	45	14.1101
[bb[ffffff"""bbmmmmbb333ffffff22b	chr17:76971990-76972272(-)$1	282	169	202	11.2320
dd[ggggggg[ddddmmmmddddggggggg22d	chr12:3387484-3387829(+)$1	345	208	241	11.7740
========####cccmmmmccc]==========	chr6:24495104-24495440(+)$1	336	180	213	16.9994
ccc[bbbbccc[cccmmmmccc]ccc]bb22bb	chr19:59056012-59056262(+)$1	250	114	147	11.7042
gggg[dddd"""cccmmmmccc22dddd22ggg	chr17:20945972-20946281(-)$1	309	138	171	14.0708
d[ggggggg"""cccmmmmccc4444ggggggg	chr12:56473855-56474100(+)$1	245	124	157	16.3957
hhhh[bb[ccc[cccmmmmccc22ccc]bb]hh	chr4:155487558-155487797(+)$1	239	150	183	12.4845
####ccc[bb"""bbmmmmbb333bb]ccceee	chr8:98863605-98863847(+)$1	242	78	111	12.5252
eee::gggggggcccmmmmccc4444ggggggg	chrX:105969951-105970278(+)$1	327	34	67	12.0250
f!!bb[a[gggggggmmmmggggggg]a22bb2	chr21:45736025-45736251(+)$1	226	43	76	10.6596
b[bb!!==========lll==========]bb]	chr11:75479844-75480132(+)$1	288	101	134	11.8329
iiiiiccc[bb[cccmmmmcccbb22ccc]iii	chr10:102107134-102107377(+)$1	243	166	199	13.6591
gggggg"""ffffffmmmmffffffggggggg:	chr8:125561955-125562246(+)$1	291	207	240	10.1407
[dddd####bb[cccmmmmccc]bb333dddd]	chr12:110778360-110778667(+)$1	307	216	249	12.8114
e!!ccc[dddd[cccooooooccc]dddd]ccc	chr16:88876376-88876642(-)$1	266	122	155	10.8688
======!!bb!!cccooooooccc]bb======	chr22:21271859-21272306(+)$1	447	22	55	13.1837
"""eeeeebb!!cccmmmmccc22bb4444eee	chr16:18812685-18812930(-)$1	245	158	191	13.0446
e[ccc[ccc"""bboooooobb22cccccc333	chr20:33734868-33735147(-)$1	279	231	264	12.1193
ccccc[ccc!!ddddmmmmdddd22ccc]ccc]	chr2:27435073-27435305(+)$1	232	103	136	12.8552
fffff[ccc[a[cccmmmmccc]acccffffff	chr17:26694736-26695026(-)$1	290	225	258	13.3324
ggggg[ccc"""ccclllccc333ccc]ggggg	chr12:57522654-57522913(+)$1	259	116	149	14.8409
d==========[cccooooooccc=========	chr19:18284560-18284853(+)$1	293	128	161	14.1120
ee[eeeeebb!!cccmmmmccc22bb]eeeeee	chr12:110719249-110719496(+)$1	247	44	77	12.6568
iiiiiiiii[ccc[bblllbb]ccciiiiiiii	chr4:83294809-83295059(-)$1	250	158	191	11.4793
eeedddd####ddddmmmmdddddddd333eee	chr1:1167173-1167446(-)$1	273	141	174	11.2053
[dddd"""ccc[cccmmmmcccccc4444dddd	chr3:133472369-133472637(+)$1	268	81	114	13.0883
g[bb!!accc!!cccmmmmcccccc]a22bb]g	chr9:117094047-117094308(+)$1	261	45	78	13.2630
dd[eeeee"""ddddmmmmddddeeeee]dddd	chr1:228675202-228675561(+)$1	359	48	81	11.1181
b22iiiiiiiiicccmmmmccc:bbgggggggn	chr7:134134369-134134640(-)$1	271	68	101	10.9911
[adddd$$$$$ddddmmmmdddd333dddd]a]	chr16:28986400-28986719(+)$1	319	226	259	11.5311
ccc==========bbmmmmbb]==========E	chr12:65152947-65153214(-)$1	267	222	255	12.5755
ddddeeeee"""cccmmmmccc333eeeee:gg	chr7:75615263-75615483(+)$1	220	16	49	13.3319
ccc[ccc[ccc!!bbmmmmbb]cccccc]ccc:	chr16:85840361-85840634(+)$1	273	20	53	11.5049
hhhhdddd####cccooooooccc4444dddd]	chr12:9262825-9263028(-)$1	203	59	92	12.1585
[bb[eeeee"""cccooooooccc]eeeeebba	chr10:28966432-28966713(+)$1	281	142	175	11.4332
gggggffffffddddmmmmdddd333ffffff]	chr2:114513987-114514231(-)$1	244	62	95	11.4779
ccffffff####cccooooooccc333ffffff	chr3:50396539-50396776(-)$1	237	75	108	12.6170

#otherMatches

#Seq PSSM
UCUGCCAGGAGAACAGUCGUGAAGCCCUGGCAG	chr17:72764235-72764440(+)$1	205	42	75	14.9177
GAACAAAUUUUUGCUGCCUAGGUAAAAUUUAUU	chr11:18422283-18422588(+)$1	305	27	60	11.0377
AGGGCUGUGAGGCCAUUGUGGACACAGGCACUU	chr11:1775137-1775404(-)$1	267	71	104	11.5900
CAGCUUGUGUGGGUCUCAGAGAAGUUCACAGCU	chr2:220086905-220087181(-)$1	276	232	265	12.8958
AUCCUCGCCAAGACCAUggugggacaggugagg	chr1:19211882-19212153(-)$1	271	160	193	14.7310
UGUCCGUCUGGCUGUGUUAAUGGCUGUGACCCU	chr12:46756722-46756971(-)$1	249	110	143	11.5125
UGCUGGGCACCGGCCUGACGGUGGGCGCCAGGG	chr10:5855073-5855311(-)$1	238	115	148	12.4874
UCCGCAGCUCUCGAGGCUCCUCCCGCUGCGGGU	chr2:9770492-9770749(-)$1	257	79	112	12.6570
UCAAGGUCUAGGCUAGACAUGGCAGAGAUGAGG	chr3:186338574-186338841(+)$1	267	134	167	11.2247
AGGAGCUUGGGGAUGCUUGAGCAUUGGCUUCUG	chr15:72492737-72492999(-)$1	262	216	249	10.9002
UGGCGGGGUCCGGAGGUUGACCUCGCCCCCGCA	chr17:79268861-79269128(-)$1	267	167	200	10.6521
GUGGCUCUUUUGCCCCUUAGGGGAUUGAGAGCC	chr11:62397636-62397843(-)$1	207	44	77	14.4970
AGAAGCCAAUCAGUGUCGUCGCGGUCGCUGUUC	chr6:29910215-29910454(+)$1	239	32	65	13.7305
CGCUGGGGGCCGCGGAUUCUGGGCUUCUGGGGA	chr6:31830443-31830696(-)$1	253	182	215	13.3777
UGCCUGAUCUGUGCCCUUGGUCCCAGGUCAGGC	chr8:144103005-144103341(+)$1	336	295	328	13.0877
CACCACCACCAAGGCCCCUGCCAGUGCCUAGGG	chr1:161192159-161192394(-)$1	235	12	45	14.1101
GGGCCCUGGGCUUCGAGAACGCCACCCAGGCUC	chr17:76971990-76972272(-)$1	282	169	202	11.2320
UCAUUGCCAUAGGCACCAUUGUCAUGGUGACGG	chr12:3387484-3387829(+)$1	345	208	241	11.7740
GGCUGccgccuccgcccccgcgccggcggccug	chr6:24495104-24495440(+)$1	336	180	213	16.9994
GGCGGCCUCCGCGGCGGCAGCCUCGGCAGCAGC	chr19:59056012-59056262(+)$1	250	114	147	11.7042
GUCCCGGCCAGAGCCCGAGGGCGAGGCCAUGGA	chr17:20945972-20946281(-)$1	309	138	171	14.0708
GCAGCCACCAAUUCGCCAGCGGUUCAGGUGGCU	chr12:56473855-56474100(+)$1	245	124	157	16.3957
UAGUGUUGAUGAGUUAAAUAACAAUGUGGAAGC	chr4:155487558-155487797(+)$1	239	150	183	12.4845
ACCUUACGUGUCUGCCUAAGCCUUCAAGUGGGC	chr8:98863605-98863847(+)$1	242	78	111	12.5252
CUGACGCUACGUGCCUCCUGGCUCCGACGUAGC	chrX:105969951-105970278(+)$1	327	34	67	12.0250
UGUGUCCGGGGCAGGUUUCCCUGCCUGGCAGCU	chr21:45736025-45736251(+)$1	226	43	76	10.6596
CGCGAAGCCCUGGCCCCGGGGGCCGGGGCAUGG	chr11:75479844-75480132(+)$1	288	101	134	11.8329
GCCUGGCCCCGUACCGCCGGGUCGCAGGCGCGG	chr10:102107134-102107377(+)$1	243	166	199	13.6591
CAAGUGAAAUAUGUUACAGAACAUGCACUUGCC	chr8:125561955-125562246(+)$1	291	207	240	10.1407
GGACAACAAGGGCACUGCUGUGGCCAUCUGUCG	chr12:110778360-110778667(+)$1	307	216	249	12.8114
GGACAGAGGGUGGUCGUCGUGGAUGAUCUGCUG	chr16:88876376-88876642(-)$1	266	122	155	10.8688
UCCAGGCCGGGAGUCACUGGAGGCACCCCUGGG	chr22:21271859-21272306(+)$1	447	22	55	13.1837
AUCGCAGCACCAACCUGCUGGUGAGUCCUGGCU	chr16:18812685-18812930(-)$1	245	158	191	13.0446
AAGCGUGAACCCGGUCCUUUCCCUUUCCGUCCA	chr20:33734868-33735147(-)$1	279	231	264	12.1193
CUgcggggcggggccgcggggccgggUCGCGCG	chr2:27435073-27435305(+)$1	232	103	136	12.8552
ACAGGAUGGACUGGCUUGUGCCUGCCACCUGUG	chr17:26694736-26695026(-)$1	290	225	258	13.3324
GCUGCUGCCCCUGCUCUCAGCUCUGGUCGCGGC	chr12:57522654-57522913(+)$1	259	116	149	14.8409
ugcugcugcugcugGACGUCCCCACGGCGGCGG	chr19:18284560-18284853(+)$1	293	128	161	14.1120
CUGCCCUCCCGGCGGGCGGCUGAGGGCGAGGGA	chr12:110719249-110719496(+)$1	247	44	77	12.6568
UUUGCUGCUAGUUUCGGUUCGCGGCAGCGGCGG	chr4:83294809-83295059(-)$1	250	158	191	11.4793
GGUCCUCGGAUCCCGAGCGCGGGGAGGCAGACC	chr1:1167173-1167446(-)$1	273	141	174	11.2053
GAUGCUGUGACACUGGAUGCAGGUUUGGUGUAU	chr3:133472369-133472637(+)$1	268	81	114	13.0883
GCUCCCCCUGCAGCUGACAAGCCAGAGACGACC	chr9:117094047-117094308(+)$1	261	45	78	13.2630
AACCGGUGCGCGCCGACUGCGGCCACCGCUUCU	chr1:228675202-228675561(+)$1	359	48	81	11.1181
UUUGUUUUUUAUUGUAAUGACAGCCUGGGAAGG	chr7:134134369-134134640(-)$1	271	68	101	10.9911
GCCUGUCUCCCGGCCGUUCGGCUCUCAUAGUGG	chr16:28986400-28986719(+)$1	319	226	259	11.5311
GCAGCCCAGCGCUGCUACUGCUGGUGCUGGGCG	chr12:65152947-65153214(-)$1	267	222	255	12.5755
GCCGCUCGGAUGAGGACUACCUGUACCGGGAGG	chr7:75615263-75615483(+)$1	220	16	49	13.3319
GUGGCCAAGCAGACCAAGAGGAUGCUGGACAUG	chr16:85840361-85840634(+)$1	273	20	53	11.5049
GAAAAUAAUUAUAAACUUCUUUUUUCUUUUGUC	chr12:9262825-9263028(-)$1	203	59	92	12.1585
UGCGUCCCUAGAGUCGAGCGGGGCAAGGGAGCC	chr10:28966432-28966713(+)$1	281	142	175	11.4332
ACCCGCUCCACGCCCUCCUGGGCCGAGUGGAGU	chr2:114513987-114514231(-)$1	244	62	95	11.4779
AGGGGCCUACGCUGCGGCCCGGCAACAAGGCCC	chr3:50396539-50396776(-)$1	237	75	108	12.6170

#DB
(((((((((....((....))....))))))))	chr17:72764235-72764440(+)$1	1	42	75	14.9177
(((.(((((((.(((.....)))))))))).))	chr11:18422283-18422588(+)$1	1	27	60	11.0377
(((.(((((...(((...))).))))).).)))	chr11:1775137-1775404(-)$1	1	71	104	11.5900
(((((.(((....(((...)))....)))))))	chr2:220086905-220087181(-)$1	1	232	265	12.8958
..(((((((....(((...)))....)))))))	chr1:19211882-19212153(-)$1	1	160	193	14.7310
((((.((((((((((....))))))).)))...	chr12:46756722-46756971(-)$1	1	110	143	11.5125
)))).(((.((.(((....))).)).)))((((	chr10:5855073-5855311(-)$1	1	115	148	12.4874
.(((((((....(((....)))..)))))))((	chr2:9770492-9770749(-)$1	1	79	112	12.6570
((...((((..((((....))))..))))...)	chr3:186338574-186338841(+)$1	1	134	167	11.2247
(((((((....(((((....)))))))))))).	chr15:72492737-72492999(-)$1	1	216	249	10.9002
..((((((....((((....))))..)))))))	chr17:79268861-79269128(-)$1	1	167	200	10.6521
(((((((((...((((...))))...)))))))	chr11:62397636-62397843(-)$1	1	44	77	14.4970
((.(((..(((.(((....)))))).))).)))	chr6:29910215-29910454(+)$1	1	32	65	13.7305
(.(((((((((.(((...)))))))))))).).	chr6:31830443-31830696(-)$1	1	182	215	13.3777
)((((((((((.(((...)))..))))))))))	chr8:144103005-144103341(+)$1	1	295	328	13.0877
(.....(((...(((....))).)))....)))	chr1:161192159-161192394(-)$1	1	12	45	14.1101
.((.((((((...((....))...))))))..)	chr17:76971990-76972272(-)$1	1	169	202	11.2320
((.(((((((.((((....)))))))))))..)	chr12:3387484-3387829(+)$1	1	208	241	11.7740
((((((((....(((....))).))))))))))	chr6:24495104-24495440(+)$1	1	180	213	16.9994
(((.(((((((.(((....))).))).))..))	chr19:59056012-59056262(+)$1	1	114	147	11.7042
((((.((((...(((....)))..))))..)))	chr17:20945972-20946281(-)$1	1	138	171	14.0708
(.(((((((...(((....)))....)))))))	chr12:56473855-56474100(+)$1	1	124	157	16.3957
((((.((.(((.(((....)))..))).)).))	chr4:155487558-155487797(+)$1	1	150	183	12.4845
....(((.((...((....))...)).))))))	chr8:98863605-98863847(+)$1	1	78	111	12.5252
)))..((((((((((....)))....)))))))	chrX:105969951-105970278(+)$1	1	34	67	12.0250
(..((.(.(((((((....))))))).)..)).	chr21:45736025-45736251(+)$1	1	43	76	10.6596
(.((..((((((((((...)))))))))).)).	chr11:75479844-75480132(+)$1	1	101	134	11.8329
((((((((.((.(((....)))))..))).)))	chr10:102107134-102107377(+)$1	1	166	199	13.6591
((((((...((((((....))))))))))))).	chr8:125561955-125562246(+)$1	1	207	240	10.1407
.((((....((.(((....))).))...)))).	chr12:110778360-110778667(+)$1	1	216	249	12.8114
(..(((.((((.(((......))).)))).)))	chr16:88876376-88876642(-)$1	1	122	155	10.8688
((((((..((..(((......))).))))))))	chr22:21271859-21272306(+)$1	1	22	55	13.1837
...(((((((..(((....)))..))....)))	chr16:18812685-18812930(-)$1	1	158	191	13.0446
(.(((.(((...((......))..))))))...	chr20:33734868-33735147(-)$1	1	231	264	12.1193
(((((.(((..((((....))))..))).))).	chr2:27435073-27435305(+)$1	1	103	136	12.8552
(((((.(((.(.(((....))).))))))))))	chr17:26694736-26695026(-)$1	1	225	258	13.3324
(((((.(((...(((...)))...))).)))))	chr12:57522654-57522913(+)$1	1	116	149	14.8409
(((((((((((.(((......))))))))))))	chr19:18284560-18284853(+)$1	1	128	161	14.1120
((.(((((((..(((....)))..)).))))))	chr12:110719249-110719496(+)$1	1	44	77	12.6568
(((((((((.(((.((...)).)))))))))))	chr4:83294809-83295059(-)$1	1	158	191	11.4793
(((((((....((((....))))))))...)))	chr1:1167173-1167446(-)$1	1	141	174	11.2053
.((((...(((.(((....))))))....))))	chr3:133472369-133472637(+)$1	1	81	114	13.0883
(.((..((((..(((....)))))).)..)).)	chr9:117094047-117094308(+)$1	1	45	78	13.2630
((.(((((...((((....))))))))).))))	chr1:228675202-228675561(+)$1	1	48	81	11.1181
)..)))))))))(((....))).(((((((((.	chr7:134134369-134134640(-)$1	1	68	101	10.9911
.(((((.....((((....))))...)))).).	chr16:28986400-28986719(+)$1	1	226	259	11.5311
)))((((((((((((....)).)))))))))))	chr12:65152947-65153214(-)$1	1	222	255	12.5755
))))(((((...(((....)))...))))).((	chr7:75615263-75615483(+)$1	1	16	49	13.3319
(((.(((.(((..((....)).)))))).))).	chr16:85840361-85840634(+)$1	1	20	53	11.5049
((((((((....(((......)))....)))).	chr12:9262825-9263028(-)$1	1	59	92	12.1585
.((.(((((...(((......))).))))))))	chr10:28966432-28966713(+)$1	1	142	175	11.4332
(((((((((((((((....))))...)))))).	chr2:114513987-114514231(-)$1	1	62	95	11.4779
((((((((....(((......)))...))))))	chr3:50396539-50396776(-)$1	1	75	108	12.6170

#PSSM
e : 0.13	d : 0.13	g : 0.13	c : 0.11	[ : 0.09	i : 0.05	h : 0.05	f : 0.05	= : 0.05	! : 0.03	b : 0.03	: : 0.01	a : 0.01	D : 0.01	# : 0.01	" : 0.01	
d : 0.13	g : 0.13	e : 0.09	= : 0.09	[ : 0.09	c : 0.09	! : 0.07	i : 0.05	h : 0.05	f : 0.03	b : 0.03	$ : 0.01	# : 0.01	" : 0.01	2 : 0.01	a : 0.01	
g : 0.16	= : 0.09	c : 0.09	i : 0.07	f : 0.07	[ : 0.07	b : 0.07	d : 0.07	e : 0.05	h : 0.05	" : 0.03	! : 0.03	a : 0.01	$ : 0.01	# : 0.01	2 : 0.01	
g : 0.18	[ : 0.11	= : 0.11	i : 0.09	d : 0.09	f : 0.07	c : 0.07	h : 0.05	b : 0.05	e : 0.05	" : 0.01	$ : 0.01	# : 0.01	: : 0.01	
g : 0.16	e : 0.11	= : 0.11	c : 0.11	i : 0.09	d : 0.09	f : 0.07	[ : 0.05	: : 0.03	b : 0.03	! : 0.03	h : 0.01	" : 0.01	$ : 0.01	
g : 0.15	c : 0.13	e : 0.11	[ : 0.11	= : 0.11	d : 0.09	i : 0.07	f : 0.07	b : 0.03	! : 0.03	$ : 0.01	# : 0.01	" : 0.01	
c : 0.20	g : 0.13	e : 0.11	= : 0.11	i : 0.07	d : 0.07	f : 0.07	! : 0.03	b : 0.03	a : 0.03	" : 0.03	# : 0.01	[ : 0.01	$ : 0.01	
c : 0.18	g : 0.11	e : 0.11	= : 0.11	i : 0.07	d : 0.07	f : 0.07	[ : 0.07	# : 0.05	! : 0.03	" : 0.03	b : 0.01	$ : 0.01	
c : 0.22	# : 0.15	g : 0.13	= : 0.09	i : 0.07	b : 0.07	e : 0.05	d : 0.05	[ : 0.03	f : 0.03	" : 0.03	$ : 0.01	
# : 0.18	" : 0.18	b : 0.13	c : 0.11	g : 0.09	= : 0.07	f : 0.05	! : 0.03	i : 0.03	[ : 0.03	d : 0.01	$ : 0.01	
" : 0.22	# : 0.18	! : 0.11	c : 0.11	g : 0.07	= : 0.07	b : 0.05	i : 0.03	f : 0.03	[ : 0.01	d : 0.01	a : 0.01	$ : 0.01	
[ : 0.24	" : 0.20	# : 0.15	d : 0.13	! : 0.09	g : 0.05	= : 0.03	e : 0.01	f : 0.01	c : 0.01	i : 0.01	
c : 0.58	d : 0.16	# : 0.05	g : 0.03	" : 0.03	= : 0.03	e : 0.01	f : 0.01	b : 0.01	! : 0.01	
c : 0.60	d : 0.16	b : 0.11	g : 0.03	e : 0.01	= : 0.01	f : 0.01	[ : 0.01	
c : 0.60	d : 0.16	b : 0.11	g : 0.03	e : 0.01	= : 0.01	f : 0.01	o : 0.01	
m : 0.64	o : 0.13	l : 0.07	c : 0.03	d : 0.03	n : 0.01	e : 0.01	= : 0.01	b : 0.01	
m : 0.67	l : 0.16	o : 0.13	n : 0.01	
m : 0.67	l : 0.16	o : 0.13	n : 0.01	
m : 0.67	o : 0.13	l : 0.09	c : 0.07	n : 0.01	
c : 0.47	d : 0.15	o : 0.13	b : 0.11	g : 0.03	m : 0.03	n : 0.01	= : 0.01	f : 0.01	
c : 0.49	d : 0.16	b : 0.13	o : 0.11	g : 0.03	e : 0.01	= : 0.01	f : 0.01	
c : 0.52	d : 0.16	] : 0.07	3 : 0.05	g : 0.03	4 : 0.01	e : 0.01	i : 0.01	2 : 0.01	= : 0.01	f : 0.01	b : 0.01	
c : 0.22	d : 0.16	2 : 0.13	] : 0.11	4 : 0.09	3 : 0.07	e : 0.03	g : 0.03	= : 0.03	i : 0.01	b : 0.01	f : 0.01	: : 0.01	
c : 0.24	2 : 0.15	3 : 0.13	4 : 0.09	g : 0.07	b : 0.07	= : 0.07	e : 0.05	d : 0.03	i : 0.01	f : 0.01	a : 0.01	
c : 0.20	4 : 0.11	b : 0.11	g : 0.09	3 : 0.09	= : 0.09	2 : 0.07	e : 0.05	] : 0.05	f : 0.03	d : 0.03	i : 0.01	
g : 0.15	c : 0.15	4 : 0.11	3 : 0.09	= : 0.09	e : 0.07	d : 0.07	b : 0.07	i : 0.05	] : 0.05	2 : 0.03	f : 0.01	
c : 0.18	g : 0.16	= : 0.11	] : 0.09	d : 0.09	e : 0.07	4 : 0.07	i : 0.05	f : 0.05	3 : 0.03	b : 0.01	a : 0.01	
g : 0.16	c : 0.16	= : 0.13	f : 0.09	d : 0.07	4 : 0.07	e : 0.07	i : 0.05	] : 0.05	3 : 0.03	b : 0.01	a : 0.01	2 : 0.01	
g : 0.18	c : 0.13	= : 0.13	d : 0.09	f : 0.09	i : 0.05	4 : 0.05	2 : 0.05	] : 0.05	e : 0.05	b : 0.03	a : 0.01	3 : 0.01	
g : 0.18	c : 0.11	= : 0.11	] : 0.09	f : 0.09	d : 0.09	i : 0.05	2 : 0.05	e : 0.05	3 : 0.03	4 : 0.03	b : 0.03	h : 0.01	
g : 0.16	d : 0.11	= : 0.11	c : 0.09	] : 0.07	f : 0.07	e : 0.07	b : 0.07	i : 0.05	3 : 0.05	2 : 0.05	h : 0.01	: : 0.01	
g : 0.16	d : 0.11	= : 0.11	e : 0.09	c : 0.09	f : 0.07	b : 0.07	i : 0.05	3 : 0.05	h : 0.03	a : 0.03	2 : 0.03	D : 0.01	] : 0.01	
d : 0.13	g : 0.13	] : 0.13	e : 0.11	= : 0.09	i : 0.05	3 : 0.05	h : 0.03	c : 0.03	b : 0.03	: : 0.03	f : 0.03	D : 0.01	2 : 0.01	n : 0.01	E : 0.01	a : 0.01	

#score	666.5148142329638
#seq	53
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_UTR_m3_run1.txt

#BEAR
c"""cccqqqqqqqqccc]c	chr11:74915998-74916236(+)$1	238	143	163	15.1149
gggggggqqqqqqqqggggg	chr16:23582650-23582894(+)$1	244	147	167	14.8746
iiii[bbqqqqqqqqbb]ii	chr17:4637131-4637382(-)$1	251	195	215	14.3049
ddd[cccqqqqqqqqccc]d	chr19:3208845-3209134(+)$1	289	221	241	14.7287
$$$ddddqqqqqqqqdddd]	chr11:770088-770352(-)$1	264	209	229	13.1857
bb!!cccqqqqqqqqccc]b	chr3:13546831-13547103(+)$1	272	152	172	14.7282
gg:ddddqqqqqqqqdddd:	chr6:33171638-33171913(+)$1	275	198	218	11.9541
cccccbbqqqqqqqqbb]cc	chr12:51324515-51324727(+)$1	212	113	133	14.0459
[bb[cccqqqqqqqqccc]b	chr11:47186738-47187050(-)$1	312	178	198	14.5886
gggggggqqqqqqqqggggg	chr22:36056543-36056798(+)$1	255	118	138	14.8746
cccccbbqqqqqqqqbb]cc	chr12:51324527-51324740(+)$1	213	101	121	14.0459
iiiiiiiqqqqqqqqiiiii	chr8:22878977-22879269(-)$1	292	261	281	14.8706
c!!ddddqqqqqqqqdddd2	chr5:150175610-150175960(+)$1	350	102	122	13.9668
ccc[cccqqqqqqqqccc]c	chr17:79861525-79861818(-)$1	293	238	258	15.2618
ee[ddddqqqqqqqqdddde	chr2:130909575-130909834(-)$1	259	77	97	13.8236
:ffffffqqqqqqqqfffff	chr21:46270578-46270793(-)$1	215	172	192	12.6987
=======qqqqqqqq=====	chr11:1774331-1774555(-)$1	224	134	154	14.8286
[ffffffqqqqqqqqfffff	chr17:78183415-78183669(-)$1	254	104	124	13.6669
b####bbqqqqqqqqbb333	chr16:81744693-81744962(+)$1	269	222	242	13.5784
[ffffffqqqqqqqqfffff	chr17:79525155-79525431(-)$1	276	47	67	13.6669
eee[cccqqqqqqqqccc]e	chr8:143817351-143817577(+)$1	226	39	59	15.0246
e!!ddddqqqqqqqqdddd2	chr7:127732075-127732448(+)$1	373	240	260	13.8722
hhhhhhhqqqqqqqqhhhhh	chr17:47127524-47127793(+)$1	269	170	190	13.3010
#ffffffqqqqqqqqfffff	chr3:52291131-52291378(-)$1	247	84	104	13.5440
dddddddqqqqqqqqdddd:	chr22:37886393-37886732(-)$1	339	133	153	12.5561
ggg[cccqqqqqqqqccc]g	chr22:38028995-38029298(+)$1	303	265	285	15.4386
=======qqqqqqqq=====	chr9:111781238-111781497(-)$1	259	65	85	14.8286
gggggggqqqqqqqqggggg	chr15:89738860-89739107(+)$1	247	28	48	14.8746
:ffffffqqqqqqqqfffff	chr2:231743371-231743611(+)$1	240	218	238	12.6987
ggg[cccqqqqqqqqccc]g	chr19:41937782-41938083(-)$1	301	163	183	15.4386
ddd!!bbqqqqqqqqbb]dd	chr1:44087723-44088026(+)$1	303	30	50	13.5948
cc[bbbbqqqqqqqqbb]bb	chr1:19545571-19545796(-)$1	225	11	31	12.9732
""eeeeeqqqqqqqqeeeee	chr20:24944000-24944265(-)$1	265	101	121	13.7449
gggggggqqqqqqqqggggg	chr16:2552034-2552289(+)$1	255	97	117	14.8746
hhhhhhhqqqqqqqqhhhhh	chr2:219269548-219269820(+)$1	272	56	76	13.3010
f[ccc[aqqqqqqqqa]ccc	chr6:160526628-160526865(+)$1	237	107	127	14.3281
bb[ddddqqqqqqqqddddb	chr12:125262304-125262552(-)$1	248	20	40	13.3973
gggggggqqqqqqqqggggg	chr22:30824403-30824810(+)$1	407	249	269	14.8746
eeeeeeeqqqqqqqqeeeee	chr2:231912121-231912359(+)$1	238	27	47	13.6591
ddeeeeeqqqqqqqqeeeee	chr16:2569925-2570200(+)$1	275	72	92	13.5803
hhhhhhhqqqqqqqqhhhhh	chr12:6500057-6500348(+)$1	291	197	217	13.3010
ccc[a[aqqqqqqqqa]a]c	chr19:7977603-7977904(+)$1	301	93	113	14.5374
gggggggqqqqqqqqggggg	chr20:43955484-43955717(-)$1	233	73	93	14.8746
d"""cccqqqqqqqqccc55	chr22:38227378-38227686(-)$1	308	69	89	13.0748
:ffffffqqqqqqqqfffff	chr5:149933399-149933657(+)$1	258	159	179	12.6987
ddd[cccqqqqqqqqcccdd	chr20:60962837-60963046(+)$1	209	1	21	14.5009
eeeeeeeqqqqqqqqeeeee	chr2:231911972-231912247(+)$1	275	176	196	13.6591
####cccqqqqqqqqccc33	chr2:242511860-242512092(+)$1	232	187	207	14.7973
ccc[cccqqqqqqqqccc22	chr19:2477633-2477940(+)$1	307	238	258	14.8112
bb[ddddqqqqqqqqddddb	chr17:76850743-76850999(-)$1	256	63	83	13.3973
eeeee[aqqqqqqqqaeeee	chr1:11721512-11721782(+)$1	270	56	76	13.9096
eee!!bbqqqqqqqqbb22e	chr17:42269259-42269530(-)$1	271	116	136	13.5184
eeeecccqqqqqqqqccc]e	chr20:48568828-48569160(+)$1	332	289	309	14.7638
gggggggqqqqqqqqggggg	chr7:4803689-4803922(+)$1	233	35	55	14.8746
ddeeeeeqqqqqqqqeeeee	chr13:113536768-113537036(+)$1	268	70	90	13.5803
:bb[cccqqqqqqqqccc]b	chr10:102121172-102121397(+)$1	225	201	221	13.6205
f:eeeeeqqqqqqqqeeeee	chr17:78938215-78938496(+)$1	281	143	163	12.6644
ffccc[aqqqqqqqqaccc]	chr5:180218111-180218414(-)$1	303	101	121	14.4158
hhhhhhhqqqqqqqqhhhhh	chr20:25277909-25278180(+)$1	271	45	65	13.3010
dffffffqqqqqqqqfffff	chr16:70191180-70191423(+)$1	243	179	199	13.5425
c!!ddddqqqqqqqqdddd]	chr9:34368866-34369124(-)$1	258	165	185	14.1551
ddd!!bbqqqqqqqqbb]dd	chr9:19380089-19380314(-)$1	225	167	187	13.5948
hhhhhhhqqqqqqqqhhhhh	chr3:184052961-184053203(+)$1	242	110	130	13.3010
fffffbbqqqqqqqqbb]ff	chr19:541554-541866(+)$1	312	144	164	13.4539
f!!ddddqqqqqqqqdddd2	chr11:63971614-63971949(+)$1	335	68	88	13.8221

#otherMatches

#Seq PSSM
CUUUAAGAAGUGUCCCUUUG	chr11:74915998-74916236(+)$1	238	143	163	15.1149
GGGCUGUGCCGCUCAACAGC	chr16:23582650-23582894(+)$1	244	147	167	14.8746
GUAAUGAUUGAGUCUUCUUU	chr17:4637131-4637382(-)$1	251	195	215	14.3049
GGUGUUUGCUGUCCGAAGGA	chr19:3208845-3209134(+)$1	289	221	241	14.7287
CCUGGCCUGGGCUGUGGCCC	chr11:770088-770352(-)$1	264	209	229	13.1857
CCAGGGGGCCGCUGACCCAG	chr3:13546831-13547103(+)$1	272	152	172	14.7282
UGGGGCCAUGAAGAAGGCUG	chr6:33171638-33171913(+)$1	275	198	218	11.9541
ugcugugauuacagacguca	chr12:51324515-51324727(+)$1	212	113	133	14.0459
GAAUGGUCAGUACCAGCCCU	chr11:47186738-47187050(-)$1	312	178	198	14.5886
uccagagauccacaguucug	chr22:36056543-36056798(+)$1	255	118	138	14.8746
ugcugugauuacagacguca	chr12:51324527-51324740(+)$1	213	101	121	14.0459
AGAUAGAAGACAAAAUCUGU	chr8:22878977-22879269(-)$1	292	261	281	14.8706
UGAUGGGUAGAGCUUUCCAG	chr5:150175610-150175960(+)$1	350	102	122	13.9668
GCUCUCCACAGCCCAGGAAG	chr17:79861525-79861818(-)$1	293	238	258	15.2618
CCUGGCCUCCCCACUGGCUG	chr2:130909575-130909834(-)$1	259	77	97	13.8236
UGCAGGCCUCUCGCUGCCUG	chr21:46270578-46270793(-)$1	215	172	192	12.6987
GCUCCCUUCAUCUCCAGGGA	chr11:1774331-1774555(-)$1	224	134	154	14.8286
UUUUUUGAGAGUGUCCGAAG	chr17:78183415-78183669(-)$1	254	104	124	13.6669
CUUUUGUCGUUUUAUACUUU	chr16:81744693-81744962(+)$1	269	222	242	13.5784
GAGGCUGCCCUGCGAUGGCC	chr17:79525155-79525431(-)$1	276	47	67	13.6669
CCUGGGUGGUCAGAGGCCGG	chr8:143817351-143817577(+)$1	226	39	59	15.0246
UGAUGGGCACUGCUAUCCAC	chr7:127732075-127732448(+)$1	373	240	260	13.8722
GAUUUUAUAUUUUUUUAAAG	chr17:47127524-47127793(+)$1	269	170	190	13.3010
AUUGGAACUCAGCUUUUCUA	chr3:52291131-52291378(-)$1	247	84	104	13.5440
UGGGCACUAACACGUGUGCG	chr22:37886393-37886732(-)$1	339	133	153	12.5561
CCUGUGGUCACAGCCUCAGG	chr22:38028995-38029298(+)$1	303	265	285	15.4386
UGAGAGUGGACUGUAGUUCU	chr9:111781238-111781497(-)$1	259	65	85	14.8286
GACAGAGUUCUUGCCCUCUG	chr15:89738860-89739107(+)$1	247	28	48	14.8746
UCCACGGGGGACGAGCCGUG	chr2:231743371-231743611(+)$1	240	218	238	12.6987
CCAUGCCCCUGUUCAGGCCU	chr19:41937782-41938083(-)$1	301	163	183	15.4386
GUCCAGCCCUCCUACGCAGA	chr1:44087723-44088026(+)$1	303	30	50	13.5948
UGUGCCUAAAAGUGGAGAGC	chr1:19545571-19545796(-)$1	225	11	31	12.9732
CAUUCUCUAGGAUUUGGGAA	chr20:24944000-24944265(-)$1	265	101	121	13.7449
CUGUGAGCCUCUCACCUUAC	chr16:2552034-2552289(+)$1	255	97	117	14.8746
GGAGGGGAGAACCAGCCCCU	chr2:219269548-219269820(+)$1	272	56	76	13.3010
GCGUGCGAGCACACACACAC	chr6:160526628-160526865(+)$1	237	107	127	14.3281
CGAGGGUCUCCGCCCACCCC	chr12:125262304-125262552(-)$1	248	20	40	13.3973
GAAGCUUAGAGACAAAGGCU	chr22:30824403-30824810(+)$1	407	249	269	14.8746
AGGCAUGGCCUUGAACAUGU	chr2:231912121-231912359(+)$1	238	27	47	13.6591
GGAUGAUUUAGAAUUGUCAU	chr16:2569925-2570200(+)$1	275	72	92	13.5803
GGCACUGGCUGGGUACGGUG	chr12:6500057-6500348(+)$1	291	197	217	13.3010
GCGCCCGUUCCUCUUCCGUC	chr19:7977603-7977904(+)$1	301	93	113	14.5374
UUCUUAAACUUCCAGUUAAG	chr20:43955484-43955717(-)$1	233	73	93	14.8746
CUCCAGGCCUCAGACCCUUC	chr22:38227378-38227686(-)$1	308	69	89	13.0748
CGGGCCCAGUUCUCCGGGCC	chr5:149933399-149933657(+)$1	258	159	179	12.6987
UUGAGGAUUGGUGUUUCCCA	chr20:60962837-60963046(+)$1	209	1	21	14.5009
AGGCAUGGCCUUGAACAUGU	chr2:231911972-231912247(+)$1	275	176	196	13.6591
GCCUGCGACCCUCCCCGCUU	chr2:242511860-242512092(+)$1	232	187	207	14.7973
GGCCUUGGGAUGGAGCAGAA	chr19:2477633-2477940(+)$1	307	238	258	14.8112
GGUGGCUGCCCUCAAGGUCC	chr17:76850743-76850999(-)$1	256	63	83	13.3973
UUCAGAGACGGAGCACCUGA	chr1:11721512-11721782(+)$1	270	56	76	13.9096
UGGCCGGUGGCUUUUCCUUC	chr17:42269259-42269530(-)$1	271	116	136	13.5184
UUGGCAGCCGUGCACCUGAC	chr20:48568828-48569160(+)$1	332	289	309	14.7638
UCUCCCUGAAGAAGAAGGGA	chr7:4803689-4803922(+)$1	233	35	55	14.8746
CCUGCGGAUGCACCGCCGUA	chr13:113536768-113537036(+)$1	268	70	90	13.5803
UCGGGGUAAAAAGUGGCUGC	chr10:102121172-102121397(+)$1	225	201	221	13.6205
GAGCACCAGCAUCCAGGUGC	chr17:78938215-78938496(+)$1	281	143	163	12.6644
GGCAACGUUCGCUCUCUUGA	chr5:180218111-180218414(-)$1	303	101	121	14.4158
CUGAAGCCUUUUCUUGUUUU	chr20:25277909-25278180(+)$1	271	45	65	13.3010
CAUGGACGUUCUCUGGUCUG	chr16:70191180-70191423(+)$1	243	179	199	13.5425
ccccagccacguggagcugu	chr9:34368866-34369124(-)$1	258	165	185	14.1551
GUGAAUCGAGUCCCAGAACG	chr9:19380089-19380314(-)$1	225	167	187	13.5948
CCCUGCUGUUGCCUGGGCAG	chr3:184052961-184053203(+)$1	242	110	130	13.3010
UCUGGGUUUUCACGUGCUUC	chr19:541554-541866(+)$1	312	144	164	13.4539
GCAGGGGAGAGAAGGCCUCA	chr11:63971614-63971949(+)$1	335	68	88	13.8221

#DB
(...(((........))).)	chr11:74915998-74916236(+)$1	1	143	163	15.1149
(((((((........)))))	chr16:23582650-23582894(+)$1	1	147	167	14.8746
((((.((........)).))	chr17:4637131-4637382(-)$1	1	195	215	14.3049
(((.(((........))).)	chr19:3208845-3209134(+)$1	1	221	241	14.7287
...((((........)))).	chr11:770088-770352(-)$1	1	209	229	13.1857
((..(((........))).)	chr3:13546831-13547103(+)$1	1	152	172	14.7282
)).((((........)))).	chr6:33171638-33171913(+)$1	1	198	218	11.9541
(((((((........)).))	chr12:51324515-51324727(+)$1	1	113	133	14.0459
.((.(((........))).)	chr11:47186738-47187050(-)$1	1	178	198	14.5886
(((((((........)))))	chr22:36056543-36056798(+)$1	1	118	138	14.8746
(((((((........)).))	chr12:51324527-51324740(+)$1	1	101	121	14.0459
(((((((........)))))	chr8:22878977-22879269(-)$1	1	261	281	14.8706
(..((((........)))).	chr5:150175610-150175960(+)$1	1	102	122	13.9668
(((.(((........))).)	chr17:79861525-79861818(-)$1	1	238	258	15.2618
((.((((........)))))	chr2:130909575-130909834(-)$1	1	77	97	13.8236
.((((((........)))))	chr21:46270578-46270793(-)$1	1	172	192	12.6987
(((((((........)))))	chr11:1774331-1774555(-)$1	1	134	154	14.8286
.((((((........)))))	chr17:78183415-78183669(-)$1	1	104	124	13.6669
(....((........))...	chr16:81744693-81744962(+)$1	1	222	242	13.5784
.((((((........)))))	chr17:79525155-79525431(-)$1	1	47	67	13.6669
(((.(((........))).)	chr8:143817351-143817577(+)$1	1	39	59	15.0246
(..((((........)))).	chr7:127732075-127732448(+)$1	1	240	260	13.8722
(((((((........)))))	chr17:47127524-47127793(+)$1	1	170	190	13.3010
.((((((........)))))	chr3:52291131-52291378(-)$1	1	84	104	13.5440
)))((((........)))).	chr22:37886393-37886732(-)$1	1	133	153	12.5561
(((.(((........))).)	chr22:38028995-38029298(+)$1	1	265	285	15.4386
(((((((........)))))	chr9:111781238-111781497(-)$1	1	65	85	14.8286
(((((((........)))))	chr15:89738860-89739107(+)$1	1	28	48	14.8746
.((((((........)))))	chr2:231743371-231743611(+)$1	1	218	238	12.6987
(((.(((........))).)	chr19:41937782-41938083(-)$1	1	163	183	15.4386
(((..((........)).))	chr1:44087723-44088026(+)$1	1	30	50	13.5948
((.((((........)).))	chr1:19545571-19545796(-)$1	1	11	31	12.9732
..(((((........)))))	chr20:24944000-24944265(-)$1	1	101	121	13.7449
(((((((........)))))	chr16:2552034-2552289(+)$1	1	97	117	14.8746
(((((((........)))))	chr2:219269548-219269820(+)$1	1	56	76	13.3010
(.(((.(........).)))	chr6:160526628-160526865(+)$1	1	107	127	14.3281
((.((((........)))))	chr12:125262304-125262552(-)$1	1	20	40	13.3973
(((((((........)))))	chr22:30824403-30824810(+)$1	1	249	269	14.8746
(((((((........)))))	chr2:231912121-231912359(+)$1	1	27	47	13.6591
))(((((........)))))	chr16:2569925-2570200(+)$1	1	72	92	13.5803
(((((((........)))))	chr12:6500057-6500348(+)$1	1	197	217	13.3010
(((.(.(........).).)	chr19:7977603-7977904(+)$1	1	93	113	14.5374
(((((((........)))))	chr20:43955484-43955717(-)$1	1	73	93	14.8746
(...(((........)))..	chr22:38227378-38227686(-)$1	1	69	89	13.0748
.((((((........)))))	chr5:149933399-149933657(+)$1	1	159	179	12.6987
(((.(((........)))))	chr20:60962837-60963046(+)$1	1	1	21	14.5009
(((((((........)))))	chr2:231911972-231912247(+)$1	1	176	196	13.6591
....(((........)))..	chr2:242511860-242512092(+)$1	1	187	207	14.7973
(((.(((........)))..	chr19:2477633-2477940(+)$1	1	238	258	14.8112
((.((((........)))))	chr17:76850743-76850999(-)$1	1	63	83	13.3973
(((((.(........)))))	chr1:11721512-11721782(+)$1	1	56	76	13.9096
(((..((........))..)	chr17:42269259-42269530(-)$1	1	116	136	13.5184
(((((((........))).)	chr20:48568828-48569160(+)$1	1	289	309	14.7638
(((((((........)))))	chr7:4803689-4803922(+)$1	1	35	55	14.8746
(((((((........)))))	chr13:113536768-113537036(+)$1	1	70	90	13.5803
.((.(((........))).)	chr10:102121172-102121397(+)$1	1	201	221	13.6205
).(((((........)))))	chr17:78938215-78938496(+)$1	1	143	163	12.6644
(((((.(........)))).	chr5:180218111-180218414(-)$1	1	101	121	14.4158
(((((((........)))))	chr20:25277909-25278180(+)$1	1	45	65	13.3010
(((((((........)))))	chr16:70191180-70191423(+)$1	1	179	199	13.5425
(..((((........)))).	chr9:34368866-34369124(-)$1	1	165	185	14.1551
(((..((........)).))	chr9:19380089-19380314(-)$1	1	167	187	13.5948
(((((((........)))))	chr3:184052961-184053203(+)$1	1	110	130	13.3010
(((((((........)).))	chr19:541554-541866(+)$1	1	144	164	13.4539
(..((((........)))).	chr11:63971614-63971949(+)$1	1	68	88	13.8221

#PSSM
g : 0.15	c : 0.13	d : 0.13	e : 0.12	h : 0.07	f : 0.07	b : 0.06	: : 0.06	[ : 0.04	i : 0.03	= : 0.03	# : 0.03	$ : 0.01	" : 0.01	
g : 0.15	f : 0.13	d : 0.10	e : 0.10	c : 0.09	b : 0.07	h : 0.07	! : 0.06	" : 0.04	i : 0.03	= : 0.03	# : 0.03	$ : 0.01	[ : 0.01	: : 0.01	
e : 0.15	g : 0.13	f : 0.12	c : 0.10	d : 0.07	! : 0.07	h : 0.07	[ : 0.06	" : 0.03	i : 0.03	b : 0.03	= : 0.03	# : 0.03	$ : 0.01	: : 0.01	
[ : 0.15	d : 0.15	f : 0.12	e : 0.12	g : 0.10	h : 0.07	! : 0.06	c : 0.06	" : 0.03	i : 0.03	= : 0.03	# : 0.03	b : 0.01	
c : 0.27	d : 0.15	f : 0.12	g : 0.10	e : 0.10	h : 0.07	! : 0.04	= : 0.03	[ : 0.01	i : 0.01	# : 0.01	b : 0.01	a : 0.01	
c : 0.21	d : 0.15	b : 0.13	g : 0.10	f : 0.10	e : 0.09	h : 0.07	[ : 0.06	= : 0.03	i : 0.01	
c : 0.21	d : 0.15	b : 0.13	g : 0.10	f : 0.10	e : 0.09	h : 0.07	a : 0.06	= : 0.03	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.21	d : 0.15	b : 0.13	g : 0.10	f : 0.10	e : 0.09	h : 0.07	a : 0.06	= : 0.03	i : 0.01	
c : 0.23	d : 0.15	b : 0.13	g : 0.10	f : 0.10	e : 0.10	h : 0.07	= : 0.03	] : 0.03	i : 0.01	
c : 0.24	d : 0.15	g : 0.10	] : 0.10	f : 0.10	e : 0.10	h : 0.07	= : 0.03	i : 0.01	3 : 0.01	a : 0.01	2 : 0.01	
d : 0.20	] : 0.16	f : 0.12	g : 0.10	e : 0.10	h : 0.07	c : 0.06	i : 0.03	= : 0.03	3 : 0.03	2 : 0.03	b : 0.01	5 : 0.01	
e : 0.16	g : 0.13	f : 0.12	c : 0.09	b : 0.09	h : 0.07	d : 0.06	2 : 0.06	] : 0.04	i : 0.03	: : 0.03	= : 0.03	3 : 0.03	5 : 0.01	

#score	908.8866648925739
#seq	65
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_CDS_m2_run2.txt

#BEAR
d[cccssssssssssccc]dd	chr6:24720015-24720250(-)$1	235	110	131	13.6876
ddddtttttttttttdddd22	chr15:35271699-35271985(-)$1	286	201	222	18.1046
ddddtttttttttttdddd33	chr7:128142495-128142797(+)$1	302	58	79	18.5198
hhhwwwwwwwwwwwwwwhhhh	chr22:30732916-30733223(-)$1	307	33	54	16.5506
eeeettttttttttteeeee:	chr17:56082184-56082428(-)$1	244	112	133	17.7351
[eeeeerrrrrrrrreeeeea	chr1:205683414-205683671(-)$1	257	171	192	10.8507
eevvvvvvvvvvvvveeeeeg	chr10:124924399-124924703(+)$1	304	162	183	17.8438
ddddtttttttttttdddd44	chr15:38776738-38777014(+)$1	276	101	122	18.3416
ffffvvvvvvvvvvvvvffff	chr19:14203524-14203788(-)$1	264	229	250	17.3922
iiiivvvvvvvvvvvvviiii	chr16:31501538-31501783(-)$1	245	70	91	17.9843
ggggtttttttttttgggggg	chr1:154148602-154148824(-)$1	222	137	158	18.5114
ggggssssssssssggggggg	chr11:126146297-126146595(+)$1	298	222	243	12.9085
hhhhhsssssssssshhhhhh	chr19:2270531-2270772(+)$1	241	25	46	11.5698
ddddtttttttttttdddd::	chr11:62291333-62291624(-)$1	291	147	168	16.4957
^^^^^^^^^^^^^^^eeeee]	chr11:62296915-62297194(-)$1	279	30	51	10.7043
ddddssssssssssddddFFF	chr15:41562695-41562914(+)$1	219	184	205	11.7446
ddddssssssssssdddd]gg	chr11:62482708-62482948(-)$1	240	20	41	13.1570
ccc[arrrrrrrrra]ccc:b	chr6:32157433-32157761(-)$1	328	210	231	10.1926
cccuuuuuuuuuuuuccc:gg	chr12:132402960-132403244(+)$1	284	195	216	17.4257
ddddtttttttttttdddd44	chr15:38776641-38776895(+)$1	254	198	219	18.3416
fffffssssssssssffffff	chr1:109473988-109474249(-)$1	261	114	135	12.6110
ccc[bbrrrrrrrrrbb]ccc	chr22:20110048-20110318(+)$1	270	161	182	9.9519
!bbuuuuuuuuuuuubb22==	chr7:128607277-128607534(-)$1	257	97	118	16.6156
ffffffrrrrrrrrrffffff	chr17:79396527-79396785(+)$1	258	163	184	9.8270
^^^^^^^^^^^^^^^ccc]gg	chr5:126889444-126889738(+)$1	294	191	212	10.7951
eeeeuuuuuuuuuuuueeeee	chr19:7705434-7705718(+)$1	284	193	214	18.2949
ggggtttttttttttgggggg	chr16:69165154-69165468(-)$1	314	115	136	18.5114
gg[cccrrrrrrrrrccc333	chr1:156713856-156714059(-)$1	203	156	177	11.2686
fffftttttttttttffffff	chr2:37429824-37430072(+)$1	248	151	172	17.6715
ffbbuuuuuuuuuuuubb]ff	chr1:16719774-16720014(+)$1	240	174	195	16.9750
[a[avvvvvvvvvvvvva]a]	chr19:18653591-18653870(-)$1	279	101	122	18.1396
ddddvvvvvvvvvvvvvdddd	chr14:69928301-69928547(+)$1	246	46	67	17.6987
c[ddddrrrrrrrrrdddd]c	chr19:6413377-6413656(-)$1	279	143	164	10.5290
ddddwwwwwwwwwwwwwwddd	chr8:23431091-23431352(+)$1	261	219	240	16.8672
[ccctttttttttttccc]ee	chr19:5130925-5131211(+)$1	286	256	277	18.8141
dd[cccrrrrrrrrrcccddd	chr22:39917442-39917683(+)$1	241	200	221	10.8364
dwwwwwwwwwwwwwwddddcc	chr21:47731339-47731732(-)$1	393	186	207	16.7497
ccc[assssssssssa]ccc]	chr16:2867275-2867541(+)$1	266	75	96	14.0254
eevvvvvvvvvvvvveeeee]	chr12:133295179-133295465(+)$1	286	88	109	17.9406
eeeeesssssssssseeeee]	chr19:49841154-49841502(-)$1	348	20	41	13.7507
ggggtttttttttttgggggg	chr5:159492169-159492444(+)$1	275	61	82	18.5114
d[cccssssssssssccc]dd	chr6:24719973-24720215(-)$1	242	75	96	13.6876
eeeevvvvvvvvvvvvveeee	chr11:62393450-62393679(-)$1	229	15	36	18.0467
)eeeeerrrrrrrrreeeee6	chr12:120534321-120534585(-)$1	264	110	131	9.9318
hhhuuuuuuuuuuuuhhhhhh	chr2:54197716-54197970(-)$1	254	208	229	16.7966
"ccctttttttttttccc444	chr11:62289984-62290239(-)$1	255	90	111	18.4959
ffffvvvvvvvvvvvvvffff	chr19:14203459-14203724(-)$1	265	165	186	17.3922
eeeeesssssssssseeeeeJ	chr11:126146110-126146397(+)$1	287	12	33	12.1817
hhhhvvvvvvvvvvvvvhhhh	chr11:126146857-126147104(+)$1	247	135	156	16.8719
eeeeeerrrrrrrrreeeee2	chr11:63525707-63525965(+)$1	258	129	150	10.7840

#otherMatches

#Seq PSSM
UCCACGAUGAAAUGAGUGAAA	chr6:24720015-24720250(-)$1	235	110	131	13.6876
AGAUGAAACAUGACAGUCUGA	chr15:35271699-35271985(-)$1	286	201	222	18.1046
CUGGGAAGAAUCAGAUCAGAU	chr7:128142495-128142797(+)$1	302	58	79	18.5198
UGCUUAUUCUUGUCUUUGCAG	chr22:30732916-30733223(-)$1	307	33	54	16.5506
UUGAGGAGGAUCAGAUCAAUA	chr17:56082184-56082428(-)$1	244	112	133	17.7351
UGUGGCUGGUAGAAUGCCACC	chr1:205683414-205683671(-)$1	257	171	192	10.8507
GGUCCACCUAAUCAUCCUGUG	chr10:124924399-124924703(+)$1	304	162	183	17.8438
gguggAUAUAGAAGAUACUAA	chr15:38776738-38777014(+)$1	276	101	122	18.3416
GGCUCACGCUUAACUCCAGCC	chr19:14203524-14203788(-)$1	264	229	250	17.3922
GAGGACUGCCCACCCCACCUC	chr16:31501538-31501783(-)$1	245	70	91	17.9843
AGCUGGUUGAAGAAGAGCUGG	chr1:154148602-154148824(-)$1	222	137	158	18.5114
uggcauuuugggaggccaagg	chr11:126146297-126146595(+)$1	298	222	243	12.9085
GGAAGACCCCCGCCGCUUCCC	chr19:2270531-2270772(+)$1	241	25	46	11.5698
AUCUGAAAAUGCCCAAGAUGA	chr11:62291333-62291624(-)$1	291	147	168	16.4957
GACGCACAAAAUCUCUAUGCC	chr11:62296915-62297194(-)$1	279	30	51	10.7043
ACUauucuuuccuuuaguaag	chr15:41562695-41562914(+)$1	219	184	205	11.7446
AGCAGAAGGAUGAGUGUUAUG	chr11:62482708-62482948(-)$1	240	20	41	13.1570
CGAGGGAAGCAAGACAUCGGG	chr6:32157433-32157761(-)$1	328	210	231	10.1926
CCAUUACUGCGAACCUGGAGG	chr12:132402960-132403244(+)$1	284	195	216	17.4257
gguggAUAUAGAAGAUACUAA	chr15:38776641-38776895(+)$1	254	198	219	18.3416
ggguccacauccccagaUCCC	chr1:109473988-109474249(-)$1	261	114	135	12.6110
CGGGACGAGGAGUGAGUGCUG	chr22:20110048-20110318(+)$1	270	161	182	9.9519
CGAUGGUUAGAAAAUUCCUUA	chr7:128607277-128607534(-)$1	257	97	118	16.6156
GCUUCCAACUCCGAGGGGAGC	chr17:79396527-79396785(+)$1	258	163	184	9.8270
AGAGAAAUACAUGAACUGCUC	chr5:126889444-126889738(+)$1	294	191	212	10.7951
CCUGAUCAAAGACUUCCAGGG	chr19:7705434-7705718(+)$1	284	193	214	18.2949
GGCUAGAAAGGAAAGGGUUUG	chr16:69165154-69165468(-)$1	314	115	136	18.5114
UAUCCCACAGGAGCAGGGCUU	chr1:156713856-156714059(-)$1	203	156	177	11.2686
GGAUCCCAUAUUUUCAUCCAA	chr2:37429824-37430072(+)$1	248	151	172	17.6715
GAGGAGCAGGAGAAACCCAUC	chr1:16719774-16720014(+)$1	240	174	195	16.9750
GCGGGGAAUUAUGGGGGUGGG	chr19:18653591-18653870(-)$1	279	101	122	18.1396
GUGAUUGUGUUUUUUUUUUAC	chr14:69928301-69928547(+)$1	246	46	67	17.6987
CCGUCCCCCCUCCCAGGACUG	chr19:6413377-6413656(-)$1	279	143	164	10.5290
GCAGUUAACGCCUUCUCCCUG	chr8:23431091-23431352(+)$1	261	219	240	16.8672
GCUCACUUCCCCUCAGAGGAG	chr19:5130925-5131211(+)$1	286	256	277	18.8141
GAUGGGUUGGUCAGUCCCUCC	chr22:39917442-39917683(+)$1	241	200	221	10.8364
ggUAGAUACUGGAGACACUUU	chr21:47731339-47731732(-)$1	393	186	207	16.7497
CUGGCGGGAUGGGGAGGCGGG	chr16:2867275-2867541(+)$1	266	75	96	14.0254
UUUCCCUUUGUAAUUGAACGU	chr12:133295179-133295465(+)$1	286	88	109	17.9406
GGUCUGGGUACUGGGAGACCA	chr19:49841154-49841502(-)$1	348	20	41	13.7507
AGGGUGAAAUGUACUUCCUGA	chr5:159492169-159492444(+)$1	275	61	82	18.5114
UCCACGAUGAAAUGAGUGAAA	chr6:24719973-24720215(-)$1	242	75	96	13.6876
AUGGACAUCUGCUUUUACCAU	chr11:62393450-62393679(-)$1	229	15	36	18.0467
CGUUGUCCUGUCCCCACAGCC	chr12:120534321-120534585(-)$1	264	110	131	9.9318
CAGAUCAAAUGCAACCUGGGC	chr2:54197716-54197970(-)$1	254	208	229	16.7966
GUGGAUAUUAAUGCCCCAGAU	chr11:62289984-62290239(-)$1	255	90	111	18.4959
GGCUCACGCUUAACUCCAGCC	chr19:14203459-14203724(-)$1	265	165	186	17.3922
CCUCCGGACAGCUGAGGAGGU	chr11:126146110-126146397(+)$1	287	12	33	12.1817
GAAGUGGACCAUGAUUUCUUC	chr11:126146857-126147104(+)$1	247	135	156	16.8719
UAUCAAGCACAAAAAUUGAUG	chr11:63525707-63525965(+)$1	258	129	150	10.7840

#DB
(.(((..........))).))	chr6:24720015-24720250(-)$1	1	110	131	13.6876
((((...........))))..	chr15:35271699-35271985(-)$1	1	201	222	18.1046
((((...........))))..	chr7:128142495-128142797(+)$1	1	58	79	18.5198
(((..............))))	chr22:30732916-30733223(-)$1	1	33	54	16.5506
((((...........))))).	chr17:56082184-56082428(-)$1	1	112	133	17.7351
.(((((.........))))))	chr1:205683414-205683671(-)$1	1	171	192	10.8507
((.............))))))	chr10:124924399-124924703(+)$1	1	162	183	17.8438
((((...........))))..	chr15:38776738-38777014(+)$1	1	101	122	18.3416
((((.............))))	chr19:14203524-14203788(-)$1	1	229	250	17.3922
((((.............))))	chr16:31501538-31501783(-)$1	1	70	91	17.9843
((((...........))))))	chr1:154148602-154148824(-)$1	1	137	158	18.5114
((((..........)))))))	chr11:126146297-126146595(+)$1	1	222	243	12.9085
(((((..........))))))	chr19:2270531-2270772(+)$1	1	25	46	11.5698
((((...........))))..	chr11:62291333-62291624(-)$1	1	147	168	16.4957
...............))))).	chr11:62296915-62297194(-)$1	1	30	51	10.7043
((((..........)))))))	chr15:41562695-41562914(+)$1	1	184	205	11.7446
((((..........)))).))	chr11:62482708-62482948(-)$1	1	20	41	13.1570
(((.(.........).))).(	chr6:32157433-32157761(-)$1	1	210	231	10.1926
(((............))).((	chr12:132402960-132403244(+)$1	1	195	216	17.4257
((((...........))))..	chr15:38776641-38776895(+)$1	1	198	219	18.3416
(((((..........))))))	chr1:109473988-109474249(-)$1	1	114	135	12.6110
(((.((.........)).)))	chr22:20110048-20110318(+)$1	1	161	182	9.9519
.((............))..))	chr7:128607277-128607534(-)$1	1	97	118	16.6156
((((((.........))))))	chr17:79396527-79396785(+)$1	1	163	184	9.8270
...............))).))	chr5:126889444-126889738(+)$1	1	191	212	10.7951
((((............)))))	chr19:7705434-7705718(+)$1	1	193	214	18.2949
((((...........))))))	chr16:69165154-69165468(-)$1	1	115	136	18.5114
((.(((.........)))...	chr1:156713856-156714059(-)$1	1	156	177	11.2686
((((...........))))))	chr2:37429824-37430072(+)$1	1	151	172	17.6715
((((............)).))	chr1:16719774-16720014(+)$1	1	174	195	16.9750
.(.(.............).).	chr19:18653591-18653870(-)$1	1	101	122	18.1396
((((.............))))	chr14:69928301-69928547(+)$1	1	46	67	17.6987
(.((((.........)))).)	chr19:6413377-6413656(-)$1	1	143	164	10.5290
((((..............)))	chr8:23431091-23431352(+)$1	1	219	240	16.8672
.(((...........))).))	chr19:5130925-5131211(+)$1	1	256	277	18.8141
((.(((.........))))))	chr22:39917442-39917683(+)$1	1	200	221	10.8364
(..............))))))	chr21:47731339-47731732(-)$1	1	186	207	16.7497
(((.(..........).))).	chr16:2867275-2867541(+)$1	1	75	96	14.0254
((.............))))).	chr12:133295179-133295465(+)$1	1	88	109	17.9406
(((((..........))))).	chr19:49841154-49841502(-)$1	1	20	41	13.7507
((((...........))))))	chr5:159492169-159492444(+)$1	1	61	82	18.5114
(.(((..........))).))	chr6:24719973-24720215(-)$1	1	75	96	13.6876
((((.............))))	chr11:62393450-62393679(-)$1	1	15	36	18.0467
.(((((.........))))).	chr12:120534321-120534585(-)$1	1	110	131	9.9318
(((............))))))	chr2:54197716-54197970(-)$1	1	208	229	16.7966
.(((...........)))...	chr11:62289984-62290239(-)$1	1	90	111	18.4959
((((.............))))	chr19:14203459-14203724(-)$1	1	165	186	17.3922
(((((..........)))))(	chr11:126146110-126146397(+)$1	1	12	33	12.1817
((((.............))))	chr11:126146857-126147104(+)$1	1	135	156	16.8719
((((((.........))))).	chr11:63525707-63525965(+)$1	1	129	150	10.7840

#PSSM
d : 0.25	e : 0.16	f : 0.12	g : 0.10	c : 0.10	h : 0.08	[ : 0.06	^ : 0.04	i : 0.02	! : 0.02	) : 0.02	" : 0.02	
d : 0.19	e : 0.19	f : 0.12	c : 0.12	g : 0.10	h : 0.08	[ : 0.06	^ : 0.04	i : 0.02	b : 0.02	a : 0.02	w : 0.02	
d : 0.19	c : 0.16	e : 0.16	f : 0.10	h : 0.08	g : 0.08	[ : 0.06	v : 0.04	^ : 0.04	b : 0.04	i : 0.02	w : 0.02	
d : 0.19	e : 0.16	c : 0.12	f : 0.10	g : 0.08	[ : 0.06	u : 0.06	w : 0.04	v : 0.04	h : 0.04	^ : 0.04	i : 0.02	b : 0.02	a : 0.02	
t : 0.23	v : 0.18	e : 0.10	u : 0.10	c : 0.08	w : 0.06	s : 0.06	^ : 0.04	a : 0.04	f : 0.04	h : 0.02	b : 0.02	d : 0.02	
t : 0.23	s : 0.19	v : 0.18	u : 0.10	w : 0.06	e : 0.06	^ : 0.04	c : 0.04	r : 0.02	b : 0.02	f : 0.02	d : 0.02	
t : 0.23	s : 0.19	r : 0.18	v : 0.18	u : 0.10	w : 0.06	^ : 0.04	
t : 0.23	s : 0.19	r : 0.18	v : 0.18	u : 0.10	w : 0.06	^ : 0.04	
t : 0.23	s : 0.19	r : 0.18	v : 0.18	u : 0.10	w : 0.06	^ : 0.04	
t : 0.23	s : 0.19	r : 0.18	v : 0.18	u : 0.10	w : 0.06	^ : 0.04	
t : 0.23	s : 0.19	r : 0.18	v : 0.18	u : 0.10	w : 0.06	^ : 0.04	
t : 0.23	s : 0.19	r : 0.18	v : 0.18	u : 0.10	w : 0.06	^ : 0.04	
t : 0.23	s : 0.19	r : 0.18	v : 0.18	u : 0.10	w : 0.06	^ : 0.04	
t : 0.23	s : 0.19	r : 0.18	v : 0.18	u : 0.10	w : 0.06	^ : 0.04	
t : 0.23	v : 0.18	r : 0.16	s : 0.14	u : 0.10	w : 0.06	^ : 0.04	d : 0.04	g : 0.02	a : 0.02	
d : 0.18	e : 0.18	c : 0.16	v : 0.14	g : 0.08	f : 0.06	w : 0.04	h : 0.04	b : 0.04	u : 0.04	] : 0.02	a : 0.02	
e : 0.19	c : 0.18	d : 0.18	v : 0.14	g : 0.08	f : 0.06	b : 0.06	w : 0.04	h : 0.04	] : 0.02	
e : 0.21	c : 0.19	d : 0.19	f : 0.10	h : 0.08	g : 0.08	i : 0.02	] : 0.02	2 : 0.02	b : 0.02	a : 0.02	w : 0.02	
e : 0.21	d : 0.19	] : 0.14	f : 0.10	h : 0.08	g : 0.08	c : 0.06	i : 0.02	F : 0.02	: : 0.02	2 : 0.02	3 : 0.02	4 : 0.02	
e : 0.23	g : 0.14	f : 0.12	d : 0.10	h : 0.08	4 : 0.06	c : 0.06	3 : 0.04	: : 0.04	2 : 0.02	i : 0.02	F : 0.02	= : 0.02	a : 0.02	] : 0.02	
g : 0.16	f : 0.12	d : 0.10	] : 0.10	h : 0.08	4 : 0.06	c : 0.06	e : 0.06	2 : 0.04	3 : 0.04	: : 0.04	a : 0.02	i : 0.02	F : 0.02	b : 0.02	= : 0.02	6 : 0.02	J : 0.02	

#score	758.6371274106217
#seq	50
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF324PNB_SSB_transcript_m1_run1.txt

#BEAR
"a[ddddoooooodddd]af	chr1:3689251-3689503(+)$1	252	147	167	11.6974
[ffffffooooooffffff]	chr17:75085288-75085527(+)$1	239	130	150	11.7735
gggggggooooooggggggg	chr14:20811359-20811561(-)$1	202	78	98	12.8491
gggggggooooooggggggg	chr3:49928687-49928928(-)$1	241	79	99	12.8491
gggggggooooooggggggg	chr14:20811368-20811578(-)$1	210	95	115	12.8491
''eeeeeooooooeeeee88	chr9:35657849-35658060(-)$1	211	80	100	11.6531
ddda[bboooooobb]a444	chr20:47897125-47897329(+)$1	204	78	98	10.7881
gggggggooooooggggggg	chr14:20811323-20811527(-)$1	204	44	64	12.8491
$$$ddddoooooodddd333	chr14:58706542-58706770(-)$1	228	121	141	12.1194
[ffffffooooooffffff]	chr17:75085333-75085563(+)$1	230	85	105	11.7735
#eeeeeaooooooa]eeeee	chr19:10220854-10221065(+)$1	211	155	175	11.6947
iieeeeeooooooeeeee00	chr14:21860212-21860514(-)$1	302	150	170	11.9844
cc[a[bboooooobba]ccc	chr7:101503687-101503965(+)$1	278	227	247	10.8230
gggggggooooooggggggg	chr14:20811347-20811550(-)$1	203	67	87	12.8491
gggggggooooooggggggg	chr14:20811412-20811623(-)$1	211	140	160	12.8491
$$$$cccooooooccc4444	chr1:173835361-173835582(-)$1	221	107	127	11.6389
''eeeeeooooooeeeee88	chr9:35657817-35658020(-)$1	203	40	60	11.6531
''eeeeeooooooeeeee88	chr9:35657867-35658071(-)$1	204	91	111	11.6531
gggggggooooooggggggg	chr11:64022988-64023232(+)$1	244	129	149	12.8491
iiiiiiiooooooiiiiiii	chr16:28883213-28883433(+)$1	220	98	118	12.1162
gggggggooooooggggggg	chr14:20811400-20811612(-)$1	212	129	149	12.8491
##eeeeeooooooeeeee33	chr15:79152797-79153015(+)$1	218	18	38	13.1312
dffffffooooooffffff:	chr14:21865412-21865664(-)$1	252	47	67	10.3730
c!!a[bboooooobb]a]cc	chr5:109035343-109035560(-)$1	217	43	63	11.3764
fffddddooooooddddccc	chr16:28883203-28883406(+)$1	203	107	127	11.0406
cceeeeeooooooeeeee]c	chr17:18965274-18965546(+)$1	272	76	96	12.0285
gggggggooooooggggggg	chr14:20811427-20811645(-)$1	218	162	182	12.8491
''eeeeeooooooeeeee88	chr9:35657871-35658107(-)$1	236	127	147	11.6531
&ffffffooooooffffff7	chr15:45490680-45490945(-)$1	265	226	246	11.0905
c!!a[bboooooobb]a]cc	chr5:109035360-109035588(-)$1	228	71	91	11.3764
gggggggooooooggggggg	chr14:20811340-20811544(-)$1	204	61	81	12.8491
dddddddoooooodddd]dd	chr19:49610868-49611114(+)$1	246	57	77	10.4704
&ffffffooooooffffffe	chr3:47451224-47451479(+)$1	255	72	92	11.1259
e"""cccooooooccc333e	chr16:71792225-71792452(-)$1	227	100	120	11.8242
''eeeeeooooooeeeee88	chr9:35657825-35658030(-)$1	205	50	70	11.6531
eeeeeeeooooooeeeee22	chr19:10220821-10221029(+)$1	208	53	73	11.7599
c!!a[bboooooobb]a]cc	chr5:109035388-109035595(-)$1	207	78	98	11.3764
#eeeeeaooooooa]eeeee	chr19:10220829-10221054(+)$1	225	180	200	11.6947
$$$ddddoooooodddd333	chr14:58706501-58706742(-)$1	241	93	113	12.1194
gggggggooooooggggggg	chr14:20811344-20811547(-)$1	203	64	84	12.8491
''eeeeeooooooeeeee88	chr9:35657822-35658024(-)$1	202	44	64	11.6531
gggggggooooooggggggg	chr14:20811327-20811534(-)$1	207	51	71	12.8491
''eeeeeooooooeeeee88	chr9:35657820-35658022(-)$1	202	42	62	11.6531
b!!ddddoooooodddd333	chr19:2427288-2427512(-)$1	224	37	57	12.2071
gggggggooooooggggggg	chr14:20811335-20811537(-)$1	202	54	74	12.8491
iiiiiiiooooooiiiiiii	chr16:28883233-28883440(+)$1	207	78	98	12.1162
[ffffffooooooffffff]	chr17:75085328-75085532(+)$1	204	90	110	11.7735
gggggggooooooggggggg	chr14:20811337-20811539(-)$1	202	56	76	12.8491
ggg!!bboooooobb22ggg	chr20:49225000-49225249(-)$1	249	177	197	11.0031
dd[ddddooooooddddddd	chr12:49722738-49722983(+)$1	245	221	241	10.5077
gggggggooooooggggggg	chr14:20811361-20811568(-)$1	207	85	105	12.8491
bb!!cccooooooccc]bb]	chr7:139025352-139025586(+)$1	234	51	71	10.8432
gggggggooooooggggggg	chr22:22050387-22050635(+)$1	248	165	185	12.8491
[ccc!!aooooooa22ccc2	chr7:139025339-139025552(+)$1	213	56	76	11.0320
$$$ddddoooooodddd333	chr15:79152827-79153041(+)$1	214	112	132	12.1194
[ffffffooooooffffff]	chr17:75085367-75085574(+)$1	207	51	71	11.7735
gggggggooooooggggggg	chr14:20811378-20811600(-)$1	222	117	137	12.8491
e!!ddddoooooodddd22e	chr11:10823025-10823255(-)$1	230	47	67	11.2885
$$$ddddoooooodddd333	chr14:58706570-58706791(-)$1	221	142	162	12.1194

#otherMatches

#Seq PSSM
UGGGCAGGUGCGACUGUGCG	chr1:3689251-3689503(+)$1	252	147	167	11.6974
AGCCUGCCAAGUUGUGGGUG	chr17:75085288-75085527(+)$1	239	130	150	11.7735
UAGGGCCAGAGGCGGCCCUA	chr14:20811359-20811561(-)$1	202	78	98	12.8491
AUCCGCUCACCUCAGCGGGU	chr3:49928687-49928928(-)$1	241	79	99	12.8491
UAGGGCCAGAGGCGGCCCUA	chr14:20811368-20811578(-)$1	210	95	115	12.8491
CUGAGGACUCUGUUCCUCCC	chr9:35657849-35658060(-)$1	211	80	100	11.6531
GUACGACUCAAAUGUGGCCU	chr20:47897125-47897329(+)$1	204	78	98	10.7881
UAGGGCCAGAGGCGGCCCUA	chr14:20811323-20811527(-)$1	204	44	64	12.8491
aaucccagggucguggguuc	chr14:58706542-58706770(-)$1	228	121	141	12.1194
AGCCUGCCAAGUUGUGGGUG	chr17:75085333-75085563(+)$1	230	85	105	11.7735
GGAUGACACUGCAGCUCAUC	chr19:10220854-10221065(+)$1	211	155	175	11.6947
UUUACCCUAACUUGGGUGUU	chr14:21860212-21860514(-)$1	302	150	170	11.9844
auuguacuagucugucuguc	chr7:101503687-101503965(+)$1	278	227	247	10.8230
UAGGGCCAGAGGCGGCCCUA	chr14:20811347-20811550(-)$1	203	67	87	12.8491
UAGGGCCAGAGGCGGCCCUA	chr14:20811412-20811623(-)$1	211	140	160	12.8491
UAAUCAUGAAGAGAUGUACU	chr1:173835361-173835582(-)$1	221	107	127	11.6389
CUGAGGACUCUGUUCCUCCC	chr9:35657817-35658020(-)$1	203	40	60	11.6531
CUGAGGACUCUGUUCCUCCC	chr9:35657867-35658071(-)$1	204	91	111	11.6531
GGGUGUCACGGUGGGCACCC	chr11:64022988-64023232(+)$1	244	129	149	12.8491
AGGUGUGAGUGUGCAUGUCU	chr16:28883213-28883433(+)$1	220	98	118	12.1162
UAGGGCCAGAGGCGGCCCUA	chr14:20811400-20811612(-)$1	212	129	149	12.8491
AUCAUUUAAUACGAAAUGUA	chr15:79152797-79153015(+)$1	218	18	38	13.1312
UUAUCAUCUCCCAAUGGUAC	chr14:21865412-21865664(-)$1	252	47	67	10.3730
gcugcgaaaucugucacccc	chr5:109035343-109035560(-)$1	217	43	63	11.3764
GAGGUGUGAGUGUGCAUGUC	chr16:28883203-28883406(+)$1	203	107	127	11.0406
gcguugcuuggcugcaacug	chr17:18965274-18965546(+)$1	272	76	96	12.0285
UAGGGCCAGAGGCGGCCCUA	chr14:20811427-20811645(-)$1	218	162	182	12.8491
CUGAGGACUCUGUUCCUCCC	chr9:35657871-35658107(-)$1	236	127	147	11.6531
UGAAACGAACCAACGUUUCU	chr15:45490680-45490945(-)$1	265	226	246	11.0905
gcugcgaaaucugucacccc	chr5:109035360-109035588(-)$1	228	71	91	11.3764
UAGGGCCAGAGGCGGCCCUA	chr14:20811340-20811544(-)$1	204	61	81	12.8491
AUCCGGCAUUCAGGCCGCGA	chr19:49610868-49611114(+)$1	246	57	77	10.4704
AGGCUGCCCGCCAGCAGCUC	chr3:47451224-47451479(+)$1	255	72	92	11.1259
CUAAGUGUCUUGUCACAAUG	chr16:71792225-71792452(-)$1	227	100	120	11.8242
CUGAGGACUCUGUUCCUCCC	chr9:35657825-35658030(-)$1	205	50	70	11.6531
GGCCGUGGCAACAUGCGGGC	chr19:10220821-10221029(+)$1	208	53	73	11.7599
gcugcgaaaucugucacccc	chr5:109035388-109035595(-)$1	207	78	98	11.3764
GGAUGACACUGCAGCUCAUC	chr19:10220829-10221054(+)$1	225	180	200	11.6947
aaucccagggucguggguuc	chr14:58706501-58706742(-)$1	241	93	113	12.1194
UAGGGCCAGAGGCGGCCCUA	chr14:20811344-20811547(-)$1	203	64	84	12.8491
CUGAGGACUCUGUUCCUCCC	chr9:35657822-35658024(-)$1	202	44	64	11.6531
UAGGGCCAGAGGCGGCCCUA	chr14:20811327-20811534(-)$1	207	51	71	12.8491
CUGAGGACUCUGUUCCUCCC	chr9:35657820-35658022(-)$1	202	42	62	11.6531
AGGGCUCAUAAUGGAGCAGG	chr19:2427288-2427512(-)$1	224	37	57	12.2071
UAGGGCCAGAGGCGGCCCUA	chr14:20811335-20811537(-)$1	202	54	74	12.8491
AGGUGUGAGUGUGCAUGUCU	chr16:28883233-28883440(+)$1	207	78	98	12.1162
AGCCUGCCAAGUUGUGGGUG	chr17:75085328-75085532(+)$1	204	90	110	11.7735
UAGGGCCAGAGGCGGCCCUA	chr14:20811337-20811539(-)$1	202	56	76	12.8491
GGUGACGGAGUUGCGGGGCC	chr20:49225000-49225249(-)$1	249	177	197	11.0031
UGCGGCGUCUCACCGUUCAA	chr12:49722738-49722983(+)$1	245	221	241	10.5077
UAGGGCCAGAGGCGGCCCUA	chr14:20811361-20811568(-)$1	207	85	105	12.8491
GAAAAUAGUUGAAUAUGUUG	chr7:139025352-139025586(+)$1	234	51	71	10.8432
UGGGCUUCAUCUCAAGCCUG	chr22:22050387-22050635(+)$1	248	165	185	12.8491
CCAAAGAGGAAAAUAGUUGA	chr7:139025339-139025552(+)$1	213	56	76	11.0320
aaucccagggucguggguuc	chr15:79152827-79153041(+)$1	214	112	132	12.1194
AGCCUGCCAAGUUGUGGGUG	chr17:75085367-75085574(+)$1	207	51	71	11.7735
UAGGGCCAGAGGCGGCCCUA	chr14:20811378-20811600(-)$1	222	117	137	12.8491
GGUACAUUUGCCUAUGUUAC	chr11:10823025-10823255(-)$1	230	47	67	11.2885
aaucccagggucguggguuc	chr14:58706570-58706791(-)$1	221	142	162	12.1194

#DB
.(.((((......)))).))	chr1:3689251-3689503(+)$1	1	147	167	11.6974
.((((((......)))))).	chr17:75085288-75085527(+)$1	1	130	150	11.7735
(((((((......)))))))	chr14:20811359-20811561(-)$1	1	78	98	12.8491
(((((((......)))))))	chr3:49928687-49928928(-)$1	1	79	99	12.8491
(((((((......)))))))	chr14:20811368-20811578(-)$1	1	95	115	12.8491
..(((((......)))))..	chr9:35657849-35658060(-)$1	1	80	100	11.6531
((((.((......)).)...	chr20:47897125-47897329(+)$1	1	78	98	10.7881
(((((((......)))))))	chr14:20811323-20811527(-)$1	1	44	64	12.8491
...((((......))))...	chr14:58706542-58706770(-)$1	1	121	141	12.1194
.((((((......)))))).	chr17:75085333-75085563(+)$1	1	85	105	11.7735
.((((((......).)))))	chr19:10220854-10221065(+)$1	1	155	175	11.6947
(((((((......)))))..	chr14:21860212-21860514(-)$1	1	150	170	11.9844
((.(.((......))).)))	chr7:101503687-101503965(+)$1	1	227	247	10.8230
(((((((......)))))))	chr14:20811347-20811550(-)$1	1	67	87	12.8491
(((((((......)))))))	chr14:20811412-20811623(-)$1	1	140	160	12.8491
....(((......)))....	chr1:173835361-173835582(-)$1	1	107	127	11.6389
..(((((......)))))..	chr9:35657817-35658020(-)$1	1	40	60	11.6531
..(((((......)))))..	chr9:35657867-35658071(-)$1	1	91	111	11.6531
(((((((......)))))))	chr11:64022988-64023232(+)$1	1	129	149	12.8491
(((((((......)))))))	chr16:28883213-28883433(+)$1	1	98	118	12.1162
(((((((......)))))))	chr14:20811400-20811612(-)$1	1	129	149	12.8491
..(((((......)))))..	chr15:79152797-79153015(+)$1	1	18	38	13.1312
)((((((......)))))).	chr14:21865412-21865664(-)$1	1	47	67	10.3730
(..(.((......)).).))	chr5:109035343-109035560(-)$1	1	43	63	11.3764
)))((((......))))(((	chr16:28883203-28883406(+)$1	1	107	127	11.0406
(((((((......))))).)	chr17:18965274-18965546(+)$1	1	76	96	12.0285
(((((((......)))))))	chr14:20811427-20811645(-)$1	1	162	182	12.8491
..(((((......)))))..	chr9:35657871-35658107(-)$1	1	127	147	11.6531
.((((((......)))))).	chr15:45490680-45490945(-)$1	1	226	246	11.0905
(..(.((......)).).))	chr5:109035360-109035588(-)$1	1	71	91	11.3764
(((((((......)))))))	chr14:20811340-20811544(-)$1	1	61	81	12.8491
(((((((......)))).))	chr19:49610868-49611114(+)$1	1	57	77	10.4704
.((((((......)))))))	chr3:47451224-47451479(+)$1	1	72	92	11.1259
(...(((......)))...)	chr16:71792225-71792452(-)$1	1	100	120	11.8242
..(((((......)))))..	chr9:35657825-35658030(-)$1	1	50	70	11.6531
(((((((......)))))..	chr19:10220821-10221029(+)$1	1	53	73	11.7599
(..(.((......)).).))	chr5:109035388-109035595(-)$1	1	78	98	11.3764
.((((((......).)))))	chr19:10220829-10221054(+)$1	1	180	200	11.6947
...((((......))))...	chr14:58706501-58706742(-)$1	1	93	113	12.1194
(((((((......)))))))	chr14:20811344-20811547(-)$1	1	64	84	12.8491
..(((((......)))))..	chr9:35657822-35658024(-)$1	1	44	64	11.6531
(((((((......)))))))	chr14:20811327-20811534(-)$1	1	51	71	12.8491
..(((((......)))))..	chr9:35657820-35658022(-)$1	1	42	62	11.6531
(..((((......))))...	chr19:2427288-2427512(-)$1	1	37	57	12.2071
(((((((......)))))))	chr14:20811335-20811537(-)$1	1	54	74	12.8491
(((((((......)))))))	chr16:28883233-28883440(+)$1	1	78	98	12.1162
.((((((......)))))).	chr17:75085328-75085532(+)$1	1	90	110	11.7735
(((((((......)))))))	chr14:20811337-20811539(-)$1	1	56	76	12.8491
(((..((......))..)))	chr20:49225000-49225249(-)$1	1	177	197	11.0031
((.((((......)))))))	chr12:49722738-49722983(+)$1	1	221	241	10.5077
(((((((......)))))))	chr14:20811361-20811568(-)$1	1	85	105	12.8491
((..(((......))).)).	chr7:139025352-139025586(+)$1	1	51	71	10.8432
(((((((......)))))))	chr22:22050387-22050635(+)$1	1	165	185	12.8491
.(((..(......)..))).	chr7:139025339-139025552(+)$1	1	56	76	11.0320
...((((......))))...	chr15:79152827-79153041(+)$1	1	112	132	12.1194
.((((((......)))))).	chr17:75085367-75085574(+)$1	1	51	71	11.7735
(((((((......)))))))	chr14:20811378-20811600(-)$1	1	117	137	12.8491
(..((((......))))..)	chr11:10823025-10823255(-)$1	1	47	67	11.2885
...((((......))))...	chr14:58706570-58706791(-)$1	1	142	162	12.1194

#PSSM
g : 0.30	' : 0.11	[ : 0.08	$ : 0.08	c : 0.08	d : 0.06	# : 0.05	i : 0.05	e : 0.05	& : 0.03	b : 0.03	" : 0.01	f : 0.01	
g : 0.30	f : 0.13	' : 0.11	$ : 0.08	! : 0.08	d : 0.05	e : 0.05	i : 0.05	c : 0.05	a : 0.01	# : 0.01	" : 0.01	b : 0.01	
g : 0.30	e : 0.22	f : 0.13	! : 0.10	$ : 0.08	[ : 0.05	d : 0.03	i : 0.03	" : 0.01	c : 0.01	
g : 0.28	e : 0.22	d : 0.16	f : 0.11	a : 0.08	i : 0.03	! : 0.03	$ : 0.01	" : 0.01	c : 0.01	
g : 0.28	e : 0.22	d : 0.16	f : 0.11	[ : 0.08	c : 0.05	i : 0.03	! : 0.03	
g : 0.28	e : 0.22	d : 0.16	f : 0.11	b : 0.10	c : 0.05	i : 0.03	! : 0.01	
g : 0.28	e : 0.18	d : 0.16	f : 0.11	b : 0.10	a : 0.05	c : 0.05	i : 0.03	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
g : 0.28	e : 0.18	d : 0.16	f : 0.11	b : 0.10	a : 0.05	c : 0.05	i : 0.03	
g : 0.28	e : 0.18	d : 0.16	f : 0.11	b : 0.10	c : 0.05	] : 0.03	i : 0.03	2 : 0.01	
g : 0.28	e : 0.22	d : 0.16	f : 0.11	] : 0.06	c : 0.05	i : 0.03	2 : 0.03	a : 0.01	
g : 0.28	e : 0.22	d : 0.16	f : 0.11	a : 0.06	] : 0.03	i : 0.03	4 : 0.01	3 : 0.01	2 : 0.01	c : 0.01	
g : 0.30	e : 0.22	f : 0.11	3 : 0.10	] : 0.08	c : 0.05	4 : 0.03	i : 0.03	d : 0.01	b : 0.01	2 : 0.01	
g : 0.30	f : 0.11	8 : 0.11	3 : 0.11	c : 0.10	4 : 0.03	e : 0.03	i : 0.03	d : 0.03	2 : 0.03	a : 0.01	0 : 0.01	] : 0.01	b : 0.01	
g : 0.30	8 : 0.11	3 : 0.10	c : 0.10	] : 0.08	e : 0.08	4 : 0.03	i : 0.03	d : 0.03	2 : 0.03	f : 0.01	0 : 0.01	: : 0.01	7 : 0.01	

#score	703.9903174255788
#seq	59
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_UTR_m1_run1.txt

#BEAR
[dddduuuuuuuuuuuudddd]==	chr3:23932074-23932326(+)$1	252	208	232	22.9640
=====vvvvvvvvvvvvv======	chr3:156260710-156261033(-)$1	323	256	280	24.2477
iiiiiiuuuuuuuuuuuuiiiiii	chr17:45300773-45301014(+)$1	241	61	85	23.7576
iiiiiiuuuuuuuuuuuuiiiiii	chr7:100486062-100486351(+)$1	289	10	34	23.7576
ffffffuuuuuuuuuuuuffffff	chr1:150237735-150238019(-)$1	284	187	211	22.1549
dd[cccuuuuuuuuuuuuccc]dd	chr17:40463776-40464024(+)$1	248	48	72	23.7318
b[ddddwwwwwwwwwwwwwwdddd	chr5:149827194-149827398(-)$1	204	44	68	21.6640
ggg[bbtttttttttttbb]gggg	chr16:31202250-31202500(+)$1	250	223	247	22.4401
#dddduuuuuuuuuuuudddd22d	chrX:153609263-153609529(+)$1	266	233	257	22.0190
gggggvvvvvvvvvvvvvgggggg	chr6:75949916-75950174(-)$1	258	135	159	23.8429
"""ccctttttttttttccc4444	chr8:101733990-101734199(-)$1	209	164	188	22.6771
ddddbbtttttttttttbb]dddd	chr21:35275677-35275971(-)$1	294	181	205	21.8563
c!!cccwwwwwwwwwwwwwwccc2	chr6:33257513-33257767(+)$1	254	130	154	22.1254
$$ddddwwwwwwwwwwwwwwdddd	chr7:138992179-138992453(+)$1	274	150	174	21.2448
======ttttttttttt=======	chr1:150547230-150547495(-)$1	265	172	196	23.3847
hhddddwwwwwwwwwwwwwwdddd	chrX:152481641-152481902(-)$1	261	154	178	21.5076
dd[cccuuuuuuuuuuuucccddd	chr2:101622707-101622978(+)$1	271	3	27	23.5379
++ddddtttttttttttddddeee	chr1:183522816-183523092(+)$1	276	29	53	20.7918
gggggvvvvvvvvvvvvvgggggg	chr11:315058-315352(+)$1	294	2	26	23.8429
=====vvvvvvvvvvvvv======	chr20:17594281-17594576(-)$1	295	221	245	24.2477
f[ddddtttttttttttdddd]ff	chr3:195778848-195779112(-)$1	264	57	81	22.3284
dddccctttttttttttccc]ddd	chr5:1815880-1816131(+)$1	251	119	143	22.8843
ggddddwwwwwwwwwwwwwwdddd	chr6:8079815-8080107(-)$1	292	197	221	21.8710
=====wwwwwwwwwwwwww=====	chr12:57628225-57628498(+)$1	273	79	103	23.2594
fffffftttttttttttffffffc	chrX:77381544-77381794(+)$1	250	136	160	21.5181
iiiiiitttttttttttiiiiiii	chr15:44063537-44063788(+)$1	251	64	88	22.8826
ggggggtttttttttttggggggg	chr11:70281279-70281524(+)$1	245	120	144	22.8132
fffffuuuuuuuuuuuuffffffd	chr1:156280252-156280538(-)$1	286	69	93	21.8218
ggg[bbtttttttttttbb]gggg	chr16:31202300-31202522(+)$1	222	173	197	22.4401
eeeeevvvvvvvvvvvvveeeee8	chr8:145140916-145141167(+)$1	251	151	175	22.2416
fffffftttttttttttffffffb	chr19:42751901-42752156(-)$1	255	69	93	21.3105
[dddduuuuuuuuuuuudddd]cc	chr19:36139163-36139405(+)$1	242	117	141	22.8297
c[cccxxxxxxxxxxxxxxxcccc	chr19:18682572-18682798(+)$1	226	87	111	17.7412
c!!cccwwwwwwwwwwwwwwccc2	chr6:31698288-31698537(-)$1	249	69	93	22.1254
e[cccwwwwwwwwwwwwwwcccee	chr3:49397399-49397679(-)$1	280	108	132	22.6785
dddccctttttttttttccc]ddd	chr2:44115632-44115893(-)$1	261	102	126	22.8843
iiiiixxxxxxxxxxxxxxxiiii	chr1:110943853-110944117(-)$1	264	147	171	17.9864
dddd[attttttttttta]ddddb	chr2:232577051-232577261(+)$1	210	159	183	22.6605
ccc!!attttttttttta22cccd	chr20:2442207-2442449(-)$1	242	96	120	22.7253
[dddduuuuuuuuuuuudddd]bb	chr17:49232911-49233123(+)$1	212	49	73	22.3268
a[cccvvvvvvvvvvvvvccc]a2	chr5:133493334-133493559(-)$1	225	99	123	23.6776
ddddyyyyyyyyyyyyyyyydddd	chr19:46029979-46030259(+)$1	280	67	91	20.4532
eeeeewwwwwwwwwwwwwweeeee	chr17:46972970-46973294(+)$1	324	225	249	21.8765
cc[ccctttttttttttccc]ccc	chr6:160526854-160527107(+)$1	253	39	63	23.1987
hhhhhvvvvvvvvvvvvvhhhhhh	chr8:101715421-101715638(-)$1	217	29	53	21.8508
gggggvvvvvvvvvvvvvgggggg	chr6:75949976-75950202(-)$1	226	163	187	23.8429
gggccctttttttttttccc]ggg	chr17:76220293-76220547(+)$1	254	151	175	23.4563
======ttttttttttt=======	chr12:56119256-56119509(-)$1	253	193	217	23.3847
[a[bbuuuuuuuuuuuubb]a]dd	chr4:57367946-57368210(+)$1	264	219	243	22.2701
Ceeeeeuuuuuuuuuuuueeeee:	chr6:33384289-33384526(-)$1	237	175	199	20.5129
eeeeewwwwwwwwwwwwwweeeee	chr10:106026953-106027276(+)$1	323	244	268	21.8765
gggggguuuuuuuuuuuugggggg	chr6:34385214-34385423(-)$1	209	2	26	23.6292
eeee[awwwwwwwwwwwwwwa]ee	chr11:57509576-57509820(+)$1	244	79	103	21.8471
:ddddvvvvvvvvvvvvvdddd::	chr11:67353918-67354203(+)$1	285	100	124	20.1229
ffffffuuuuuuuuuuuuffffff	chr9:127998695-127998949(-)$1	254	126	150	22.1549
b[cccwwwwwwwwwwwwwwccc]b	chr22:31303517-31303820(+)$1	303	38	62	22.3830
gggggguuuuuuuuuuuugggggg	chr1:20978612-20978835(-)$1	223	28	52	23.6292
hhddddtttttttttttdddd]hh	chr6:34555453-34555708(-)$1	255	214	238	21.9751

#otherMatches

#Seq PSSM
AAUAGCAACUUUUAAAAUUGUCAU	chr3:23932074-23932326(+)$1	252	208	232	22.9640
CGUUUAUUAAAAGGAAAAAAAUGU	chr3:156260710-156261033(-)$1	323	256	280	24.2477
GGAGGGUGAAAUGCCCUUUCCUCC	chr17:45300773-45301014(+)$1	241	61	85	23.7576
UCCUGUACCUCUCACCUCACAGGA	chr7:100486062-100486351(+)$1	289	10	34	23.7576
GAUUUUGACUAAUAAAAAAGAAUU	chr1:150237735-150238019(-)$1	284	187	211	22.1549
CCAUGGAAGAUUGAGAGCCCAAGG	chr17:40463776-40464024(+)$1	248	48	72	23.7318
AGGGAUUCUGGAAAUGUUUUGUCU	chr5:149827194-149827398(-)$1	204	44	68	21.6640
GAGGCCAUAGGAUAACAGGGUUUU	chr16:31202250-31202500(+)$1	250	223	247	22.4401
UGUGAUCGUCCUCUUCUUCAUUUA	chrX:153609263-153609529(+)$1	266	233	257	22.0190
CACCAUGAUUCUUACAGUUGGUGG	chr6:75949916-75950174(-)$1	258	135	159	23.8429
ACCCGACACCGCCACCCUCGCUCC	chr8:101733990-101734199(-)$1	209	164	188	22.6771
UGGAGCAACAAUAAAAAGCUUCCA	chr21:35275677-35275971(-)$1	294	181	205	21.8563
UGAUCCAGAAGAAGCUACAGGGAG	chr6:33257513-33257767(+)$1	254	130	154	22.1254
AACUGGUGCUUGUUUAAUUUCCAG	chr7:138992179-138992453(+)$1	274	150	174	21.2448
UCCUCCAAAAGGGAAAGGGAGGAU	chr1:150547230-150547495(-)$1	265	172	196	23.3847
UUUUGUGAAUUGGGAUAAUAACAG	chrX:152481641-152481902(-)$1	261	154	178	21.5076
UUGUGGAAAAUAGAAUGCCCAGAC	chr2:101622707-101622978(+)$1	271	3	27	23.5379
UGGCAAUAUGAAACCUUUUGUGCU	chr1:183522816-183523092(+)$1	276	29	53	20.7918
UGACAGUCUACCAUAUUAUGUUAC	chr11:315058-315352(+)$1	294	2	26	23.8429
UGAUGCCAUUAAAACCAACGUUGG	chr20:17594281-17594576(-)$1	295	221	245	24.2477
GUGGAGUAUCACUUCCUCUCUCCC	chr3:195778848-195779112(-)$1	264	57	81	22.3284
UGGGCUCCAGUUCAGACAGCACCA	chr5:1815880-1816131(+)$1	251	119	143	22.8843
AGUUGAGAUCCAGUUAUAAAUUAA	chr6:8079815-8080107(-)$1	292	197	221	21.8710
GAAGAUCUUUUCUUUUUCCUUUUU	chr12:57628225-57628498(+)$1	273	79	103	23.2594
AUGGAAACAAGAUGAAAUUCCAUU	chrX:77381544-77381794(+)$1	250	136	160	21.5181
GGACCAGUUUAUGUUUGUGGUUUU	chr15:44063537-44063788(+)$1	251	64	88	22.8826
AAUAUACACAUUGCUUUUAUAUUU	chr11:70281279-70281524(+)$1	245	120	144	22.8132
CCAGGAGAACUGUGAGACCUGGGG	chr1:156280252-156280538(-)$1	286	69	93	21.8218
GAGGCCAUAGGAUAACAGGGUUUU	chr16:31202300-31202522(+)$1	222	173	197	22.4401
CCCCAUUCUGCCUCCUUCUGGGGA	chr8:145140916-145141167(+)$1	251	151	175	22.2416
AAUUUUAUAAUGAACCAAAAAUUC	chr19:42751901-42752156(-)$1	255	69	93	21.3105
CAGGUUGAAUCCGGGGUGCCUUUA	chr19:36139163-36139405(+)$1	242	117	141	22.8297
CCGCUAUCUUCUUUUUCUUCAGCG	chr19:18682572-18682798(+)$1	226	87	111	17.7412
UGAGGGAAAGAAAUGGGGGGCCUG	chr6:31698288-31698537(-)$1	249	69	93	22.1254
ACUGGCCUUUUUCAUUUAUCUAUA	chr3:49397399-49397679(-)$1	280	108	132	22.6785
GCUUUGAAUUUUAUGCACAGCAGC	chr2:44115632-44115893(-)$1	261	102	126	22.8843
GAUAUUAGUAAGAAAGGAUCAUGU	chr1:110943853-110944117(-)$1	264	147	171	17.9864
AGCUGAAGAUGAUGAGGUGGGUUC	chr2:232577051-232577261(+)$1	210	159	183	22.6605
ACAUAGUCCUUUUAUCUCCUUGUG	chr20:2442207-2442449(-)$1	242	96	120	22.7253
UGUAGGCAAGUGAUUCACUGCUGU	chr17:49232911-49233123(+)$1	212	49	73	22.3268
GGUACGCAAAGAGAACCAGUGGUG	chr5:133493334-133493559(-)$1	225	99	123	23.6776
GCUGUAACUUUUUGGAACCUCAGU	chr19:46029979-46030259(+)$1	280	67	91	20.4532
GUGUUAAGCUUUACCAUUAAACAC	chr17:46972970-46973294(+)$1	324	225	249	21.8765
GCUGGUGAAUUCAAACAACCUGCC	chr6:160526854-160527107(+)$1	253	39	63	23.1987
UUUGUUUUUUUAACAUUUACAGAU	chr8:101715421-101715638(-)$1	217	29	53	21.8508
CACCAUGAUUCUUACAGUUGGUGG	chr6:75949976-75950202(-)$1	226	163	187	23.8429
GCUCCUCCCUCAGAAAAAGGCAGU	chr17:76220293-76220547(+)$1	254	151	175	23.4563
GGGGGAGUGGAAUAGUAUCCUCCA	chr12:56119256-56119509(-)$1	253	193	217	23.3847
GAAACAUCUUCCUCAAAGUCUGCC	chr4:57367946-57368210(+)$1	264	219	243	22.2701
CCCCAAUAAAUCCCGUCUUUGGGU	chr6:33384289-33384526(-)$1	237	175	199	20.5129
UAUUUUCCUUCACUAAUAUGAAUA	chr10:106026953-106027276(+)$1	323	244	268	21.8765
GGCCUCUGGAGUUAUAAUGAGGCC	chr6:34385214-34385423(-)$1	209	2	26	23.6292
GGUGGUGGAAGAGUUGAAGAAGUA	chr11:57509576-57509820(+)$1	244	79	103	21.8471
CUCCCCAUCAAUGGCAACGGGAAA	chr11:67353918-67354203(+)$1	285	100	124	20.1229
CUUUUGUUAGGAAAAAAUUGAAAG	chr9:127998695-127998949(-)$1	254	126	150	22.1549
GUCCUAAAAGUUCAUCACAGGGUC	chr22:31303517-31303820(+)$1	303	38	62	22.3830
GUUUUGUUUUGCUUUGUUUAAAGC	chr1:20978612-20978835(-)$1	223	28	52	23.6292
AGCCUUCUCUCCCCCAUAAGGACU	chr6:34555453-34555708(-)$1	255	214	238	21.9751

#DB
.((((............)))).))	chr3:23932074-23932326(+)$1	1	208	232	22.9640
(((((.............))))))	chr3:156260710-156261033(-)$1	1	256	280	24.2477
((((((............))))))	chr17:45300773-45301014(+)$1	1	61	85	23.7576
((((((............))))))	chr7:100486062-100486351(+)$1	1	10	34	23.7576
((((((............))))))	chr1:150237735-150238019(-)$1	1	187	211	22.1549
((.(((............))).))	chr17:40463776-40464024(+)$1	1	48	72	23.7318
(.((((..............))))	chr5:149827194-149827398(-)$1	1	44	68	21.6640
(((.((...........)).))))	chr16:31202250-31202500(+)$1	1	223	247	22.4401
.((((............))))..)	chrX:153609263-153609529(+)$1	1	233	257	22.0190
(((((.............))))))	chr6:75949916-75950174(-)$1	1	135	159	23.8429
...(((...........)))....	chr8:101733990-101734199(-)$1	1	164	188	22.6771
((((((...........)).))))	chr21:35275677-35275971(-)$1	1	181	205	21.8563
(..(((..............))).	chr6:33257513-33257767(+)$1	1	130	154	22.1254
..((((..............))))	chr7:138992179-138992453(+)$1	1	150	174	21.2448
((((((...........)))))))	chr1:150547230-150547495(-)$1	1	172	196	23.3847
((((((..............))))	chrX:152481641-152481902(-)$1	1	154	178	21.5076
((.(((............))))))	chr2:101622707-101622978(+)$1	1	3	27	23.5379
..((((...........)))))))	chr1:183522816-183523092(+)$1	1	29	53	20.7918
(((((.............))))))	chr11:315058-315352(+)$1	1	2	26	23.8429
(((((.............))))))	chr20:17594281-17594576(-)$1	1	221	245	24.2477
(.((((...........)))).))	chr3:195778848-195779112(-)$1	1	57	81	22.3284
((((((...........))).)))	chr5:1815880-1816131(+)$1	1	119	143	22.8843
((((((..............))))	chr6:8079815-8080107(-)$1	1	197	221	21.8710
(((((..............)))))	chr12:57628225-57628498(+)$1	1	79	103	23.2594
((((((...........)))))))	chrX:77381544-77381794(+)$1	1	136	160	21.5181
((((((...........)))))))	chr15:44063537-44063788(+)$1	1	64	88	22.8826
((((((...........)))))))	chr11:70281279-70281524(+)$1	1	120	144	22.8132
(((((............)))))))	chr1:156280252-156280538(-)$1	1	69	93	21.8218
(((.((...........)).))))	chr16:31202300-31202522(+)$1	1	173	197	22.4401
(((((.............))))).	chr8:145140916-145141167(+)$1	1	151	175	22.2416
((((((...........))))))(	chr19:42751901-42752156(-)$1	1	69	93	21.3105
.((((............)))).))	chr19:36139163-36139405(+)$1	1	117	141	22.8297
(.(((...............))))	chr19:18682572-18682798(+)$1	1	87	111	17.7412
(..(((..............))).	chr6:31698288-31698537(-)$1	1	69	93	22.1254
(.(((..............)))))	chr3:49397399-49397679(-)$1	1	108	132	22.6785
((((((...........))).)))	chr2:44115632-44115893(-)$1	1	102	126	22.8843
(((((...............))))	chr1:110943853-110944117(-)$1	1	147	171	17.9864
((((.(...........).)))))	chr2:232577051-232577261(+)$1	1	159	183	22.6605
(((..(...........)..))))	chr20:2442207-2442449(-)$1	1	96	120	22.7253
.((((............)))).))	chr17:49232911-49233123(+)$1	1	49	73	22.3268
(.(((.............))).).	chr5:133493334-133493559(-)$1	1	99	123	23.6776
((((................))))	chr19:46029979-46030259(+)$1	1	67	91	20.4532
(((((..............)))))	chr17:46972970-46973294(+)$1	1	225	249	21.8765
((.(((...........))).)))	chr6:160526854-160527107(+)$1	1	39	63	23.1987
(((((.............))))))	chr8:101715421-101715638(-)$1	1	29	53	21.8508
(((((.............))))))	chr6:75949976-75950202(-)$1	1	163	187	23.8429
((((((...........))).)))	chr17:76220293-76220547(+)$1	1	151	175	23.4563
((((((...........)))))))	chr12:56119256-56119509(-)$1	1	193	217	23.3847
.(.((............)).).))	chr4:57367946-57368210(+)$1	1	219	243	22.2701
)(((((............))))).	chr6:33384289-33384526(-)$1	1	175	199	20.5129
(((((..............)))))	chr10:106026953-106027276(+)$1	1	244	268	21.8765
((((((............))))))	chr6:34385214-34385423(-)$1	1	2	26	23.6292
((((.(..............).))	chr11:57509576-57509820(+)$1	1	79	103	21.8471
.((((.............))))..	chr11:67353918-67354203(+)$1	1	100	124	20.1229
((((((............))))))	chr9:127998695-127998949(-)$1	1	126	150	22.1549
(.(((..............))).)	chr22:31303517-31303820(+)$1	1	38	62	22.3830
((((((............))))))	chr1:20978612-20978835(-)$1	1	28	52	23.6292
((((((...........)))).))	chr6:34555453-34555708(-)$1	1	214	238	21.9751

#PSSM
g : 0.17	d : 0.12	f : 0.10	= : 0.08	c : 0.08	e : 0.08	[ : 0.06	i : 0.06	h : 0.05	b : 0.03	# : 0.01	" : 0.01	$ : 0.01	+ : 0.01	a : 0.01	C : 0.01	: : 0.01	
d : 0.20	g : 0.17	[ : 0.10	= : 0.08	f : 0.08	e : 0.08	i : 0.06	h : 0.05	! : 0.03	c : 0.03	" : 0.01	$ : 0.01	+ : 0.01	a : 0.01	
d : 0.29	g : 0.15	= : 0.08	f : 0.08	e : 0.08	c : 0.08	i : 0.06	[ : 0.06	! : 0.03	" : 0.01	h : 0.01	
d : 0.25	c : 0.22	g : 0.10	= : 0.08	f : 0.08	e : 0.08	i : 0.06	[ : 0.03	! : 0.01	h : 0.01	b : 0.01	
c : 0.22	d : 0.20	g : 0.10	= : 0.08	f : 0.08	i : 0.06	b : 0.06	e : 0.06	[ : 0.03	! : 0.01	y : 0.01	h : 0.01	
v : 0.15	c : 0.15	d : 0.12	u : 0.10	w : 0.08	f : 0.06	i : 0.05	b : 0.05	g : 0.05	a : 0.05	= : 0.03	x : 0.03	y : 0.01	e : 0.01	
t : 0.32	u : 0.25	w : 0.20	v : 0.15	x : 0.03	y : 0.01	
t : 0.32	u : 0.25	w : 0.20	v : 0.15	x : 0.03	y : 0.01	
t : 0.32	u : 0.25	w : 0.20	v : 0.15	x : 0.03	y : 0.01	
t : 0.32	u : 0.25	w : 0.20	v : 0.15	x : 0.03	y : 0.01	
t : 0.32	u : 0.25	w : 0.20	v : 0.15	x : 0.03	y : 0.01	
t : 0.32	u : 0.25	w : 0.20	v : 0.15	x : 0.03	y : 0.01	
t : 0.32	u : 0.25	w : 0.20	v : 0.15	x : 0.03	y : 0.01	
t : 0.32	u : 0.25	w : 0.20	v : 0.15	x : 0.03	y : 0.01	
t : 0.32	u : 0.25	w : 0.20	v : 0.15	x : 0.03	y : 0.01	
t : 0.32	u : 0.25	w : 0.20	v : 0.15	x : 0.03	y : 0.01	
t : 0.32	u : 0.25	w : 0.20	v : 0.15	x : 0.03	y : 0.01	
w : 0.20	v : 0.15	u : 0.15	d : 0.12	c : 0.08	b : 0.06	f : 0.05	= : 0.03	x : 0.03	a : 0.03	i : 0.01	g : 0.01	y : 0.01	
w : 0.20	d : 0.13	c : 0.13	g : 0.10	f : 0.08	= : 0.06	b : 0.06	i : 0.05	e : 0.03	x : 0.03	] : 0.01	2 : 0.01	y : 0.01	h : 0.01	
c : 0.17	d : 0.15	w : 0.12	g : 0.10	= : 0.08	f : 0.08	] : 0.06	e : 0.06	i : 0.05	x : 0.03	2 : 0.01	y : 0.01	h : 0.01	
d : 0.25	c : 0.15	g : 0.13	= : 0.08	f : 0.08	i : 0.06	] : 0.06	e : 0.06	a : 0.03	4 : 0.01	h : 0.01	
d : 0.18	] : 0.15	g : 0.15	c : 0.12	= : 0.08	f : 0.08	e : 0.08	i : 0.06	2 : 0.01	4 : 0.01	h : 0.01	
d : 0.20	g : 0.15	e : 0.12	= : 0.10	f : 0.10	c : 0.10	i : 0.06	h : 0.03	2 : 0.01	4 : 0.01	b : 0.01	a : 0.01	: : 0.01	] : 0.01	
d : 0.24	g : 0.15	= : 0.10	e : 0.08	i : 0.06	c : 0.06	b : 0.06	f : 0.05	2 : 0.05	h : 0.03	: : 0.03	4 : 0.01	8 : 0.01	

#score	1297.2693227164123
#seq	58
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_UTR_m2_run2.txt

#BEAR
cc"""dddd"""ddddoooooodddd333dddd333	chr19:49611208-49611487(+)$1	279	33	69	15.2670
d"""bb####ccc!!ddddllldddd22ccc333bb	chr6:37138029-37138340(+)$1	311	220	256	10.1695
dd[bb[ccc"""eeeeesssssssssseeeee333c	chr11:2160379-2160642(-)$1	263	51	87	10.0694
ccc[eeeee"""ddddoooooodddd]eeeee333c	chr16:204265-204551(+)$1	286	38	74	16.4260
ee^^^^^^^^^^^^^^^^^^^^^^^^^eeeee]a]c	chr2:70314566-70314898(+)$1	332	275	311	9.0902
ccc[a[bb[ccc!!cccooooooccc]ccc]bb]ac	chr8:101733713-101733973(-)$1	260	97	133	12.9230
Eccc"""ccc!!ddddlllddddccc4444cccccc	chr17:39845042-39845364(+)$1	322	228	264	10.8948
dddd[bb$$$$$ddddmmmmddddbb]dddda]bb]	chr7:75677322-75677621(+)$1	299	83	119	8.5288
ccceeeee[bb[ddddllldddd]bb]eeeee]ccc	chr19:1241671-1242017(+)$1	346	244	280	10.3923
c:ccc[ccc$$$$$ddddmmmmdddd4444ccc]cc	chr16:88870116-88870414(+)$1	298	153	189	9.8471
a$$$$$ggggggg[bboooooobbggggggg]a]hh	chr6:37137955-37138229(+)$1	274	174	210	9.7158
ccc[eeeee[bb[cccmmmmccc]bb]eeeeecccd	chrX:152953477-152953693(+)$1	216	58	94	10.1805
hh!!bb[ffffffeeeeeaooooooa]eeeee4444	chr7:5570061-5570331(-)$1	270	218	254	9.6636
[bb!!a!!bb!!bbaooooooa]bb22bb22a22bb	chr1:32403543-32403846(-)$1	303	46	82	10.0373
ddd[eeeee!!eeeeerrrrrrrrreeeeeeeeee3	chr19:3985312-3985559(-)$1	247	173	209	10.5569
d"""eeeee"""cccmmmmccceeeee22dddd444	chr11:64001965-64002310(+)$1	345	255	291	10.3588
d[bb!!eeeee[cccooooooccc]eeeee]bb22d	chr20:57466603-57466870(+)$1	267	63	99	11.7935
=========^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160295-2160563(-)$1	268	161	197	9.4991
:eeeee[dddd!!cccooooooccc22dddd]eeee	chr12:6875608-6875935(+)$1	327	146	182	10.1343
d[bb!!eeeee[cccooooooccc]eeeee]bb22d	chr20:57466518-57466792(+)$1	274	148	184	11.7935
ccc[a[bb[ccc!!cccooooooccc]ccc]bb]ac	chr8:101733773-101734042(-)$1	269	166	202	12.9230
[bb[ccc[ccc!!cccnnnnncccccc]ccc]bb]b	chr8:146015122-146015411(-)$1	289	138	174	9.5652
ddd[bb!!ccc[ddddoooooodddd22cccbbddd	chr1:32479388-32479656(+)$1	268	185	221	12.3244
!=============bboooooobb]===========	chr15:75230176-75230486(-)$1	310	5	41	12.4272
ccc[eeeee!!cccrrrrrrrrrccc22eeeee]cc	chr16:2802591-2802851(+)$1	260	73	109	12.9160
ddddcccccc!!ddddllldddd22ccc]ccc4444	chr3:141595429-141595715(+)$1	286	231	267	10.2755
ccc[eeeeewwwwwwwwwwwwwweeeee]ccc22cc	chrX:152953601-152953886(+)$1	285	192	228	9.9951
eeeee[cccwwwwwwwwwwwwwwccc22eeeeeddd	chr1:26798903-26799202(+)$1	299	191	227	8.9014
cccffffff"""cccooooooccc]ffffff4444c	chr16:58231517-58231871(-)$1	354	221	257	12.8513
iiiii[ccc"""eeeeeooooooeeeee]ccciiii	chr19:49468554-49468819(+)$1	265	32	68	12.8176
hbb[eeeee"""ddddmmmmdddd333eeeee]bb]	chr16:30078454-30078695(+)$1	241	49	85	11.4138
iiiiiiiii[ddddddddmmmmdddd]ddddiiiii	chr22:21272027-21272359(+)$1	332	241	277	9.4570
##==========ddddoooooodddd55555=====	chr11:810132-810381(+)$1	249	24	60	10.2562
ccc[ccc####dddd[bbmmmmbbdddd333ccc33	chr6:37787506-37787819(+)$1	313	32	68	9.8571
ccc[eeeee[a[cccqqqqqqqqccc]a]eeeee]c	chr19:3985275-3985512(-)$1	237	34	70	10.9653
iiiiii:ccc!!ccc[bboooooobb]ccc22ccc:	chr2:232573166-232573418(+)$1	252	77	113	9.2125

#otherMatches

#Seq PSSM
CGGGACCGGAAGCGGCGAAGCAGCCGGAGUCGGGAG	chr19:49611208-49611487(+)$1	279	33	69	15.2670
cacagccacagccccagGCAUAGCCUUCGGCACAGC	chr6:37138029-37138340(+)$1	311	220	256	10.1695
cccggccggccccggccccccccuuccggccgcccc	chr11:2160379-2160642(-)$1	263	51	87	10.0694
GCGCGCUUCCCCGCCGACUUCACGGCCGAGGCCCAC	chr16:204265-204551(+)$1	286	38	74	16.4260
GCCCAACUCCCCCGAACGCCGCCCGCCGCUCGCCAU	chr2:70314566-70314898(+)$1	332	275	311	9.0902
GGCACUCGCUCUCCUCCUCUCACGGAAAGGUCGCGG	chr8:101733713-101733973(-)$1	260	97	133	12.9230
AGGAAAAGGAAUCGUAUCGUAUGUCCGCUAUCCAGA	chr17:39845042-39845364(+)$1	322	228	264	10.8948
GUGGAGGUCGUUGGAGUCACUUCCCCGUCACCAGCU	chr7:75677322-75677621(+)$1	299	83	119	8.5288
gccgaggccgccgccgccccggcugccgccUCUGGC	chr19:1241671-1242017(+)$1	346	244	280	10.3923
gcgcgccgccgccccgggcccccccgcAUCGCGCCG	chr16:88870116-88870414(+)$1	298	153	189	9.8471
GACCCCGCUGGCGCGCCCUCCCGCCGCCAGUCCCGG	chr6:37137955-37138229(+)$1	274	174	210	9.7158
UCGCGGGCCAGCCGGGCAGCCUccgcgggccccggc	chrX:152953477-152953693(+)$1	216	58	94	10.1805
ggccgcaggcggccgcggccccUUCGCCCGUGCAGA	chr7:5570061-5570331(-)$1	270	218	254	9.6636
cgcagcagcagcagcaAGACGGACUCGUGGAGACGc	chr1:32403543-32403846(-)$1	303	46	82	10.0373
CCGCCACCAUGGUGAGUAACCCUGCCUCGCUGGUGC	chr19:3985312-3985559(-)$1	247	173	209	10.5569
ccauggggcucuggcugucgccgccccccgcgccgc	chr11:64001965-64002310(+)$1	345	255	291	10.3588
gagcccgcgcccggcccgcccgcccggcgcugcccc	chr20:57466603-57466870(+)$1	267	63	99	11.7935
CGCCUCCUCUUCAUCUACCUCAACUCCCCCCAUCCC	chr11:2160295-2160563(-)$1	268	161	197	9.4991
cgccgccgccgccaccgcGCCAGGUUCCGGCCGCGG	chr12:6875608-6875935(+)$1	327	146	182	10.1343
gagcccgcgcccggcccgcccgcccggcgcugcccc	chr20:57466518-57466792(+)$1	274	148	184	11.7935
GGCACUCGCUCUCCUCCUCUCACGGAAAGGUCGCGG	chr8:101733773-101734042(-)$1	269	166	202	12.9230
UGCUGGCCGCAAAGUGGGUCUCAUUGCUGCCCGCCG	chr8:146015122-146015411(-)$1	289	138	174	9.5652
CCUUGGAUCGCACAUCCUCCCAGAUGCAGCGCCGGG	chr1:32479388-32479656(+)$1	268	185	221	12.3244
GUCGCAGUGGGCGGGCCUACGUGCUCCGCCCGCUGU	chr15:75230176-75230486(-)$1	310	5	41	12.4272
GGGGUGCGAGUGGCGCAGUUGGAGCCCGUUGCGGCC	chr16:2802591-2802851(+)$1	260	73	109	12.9160
GAAGUCCCUCAACCAGAGCCUGGCCGAGUGGAAGCU	chr3:141595429-141595715(+)$1	286	231	267	10.2755
CACAUGAGAUUCUUCAGGCUCACUUUCAAGUGCUUC	chrX:152953601-152953886(+)$1	285	192	228	9.9951
GCCGCCACCAUGCCCAAGAGAAAGGUACGUGGCGCG	chr1:26798903-26799202(+)$1	299	191	227	8.9014
cccgcccgccaugcccggcccggccgcgGGCAGCAG	chr16:58231517-58231871(-)$1	354	221	257	12.8513
UCUGUCUCUUGCUUCAACAGUGUUUGGACGGAACAG	chr19:49468554-49468819(+)$1	265	32	68	12.8176
UGAUGGGAAACCCUAGCUAACUAGUCCUUCCCCUCU	chr16:30078454-30078695(+)$1	241	49	85	11.4138
UGGGGCCGGUGUCUCGCCAGGAGGCGCAGACCCGGC	chr22:21272027-21272359(+)$1	332	241	277	9.4570
CGCCCGGCGGCCCCGGGAUGGGCCGGCAGGAGGCCG	chr11:810132-810381(+)$1	249	24	60	10.2562
UCCAGCUGACCGGCCUGGAAUcccggcuccgagccc	chr6:37787506-37787819(+)$1	313	32	68	9.8571
GUGUUGACGUCAGCGUUCUCUUCCGCCGUCGUCGCC	chr19:3985275-3985512(-)$1	237	34	70	10.9653
GCUGCUCUGAAAAGCCAUCUUUGCAUUGUUCCUCAU	chr2:232573166-232573418(+)$1	252	77	113	9.2125

#DB
((...((((...((((......))))...))))...	chr19:49611208-49611487(+)$1	1	33	69	15.2670
(...((....(((..((((...))))..)))...))	chr6:37138029-37138340(+)$1	1	220	256	10.1695
((.((.(((...(((((..........)))))...)	chr11:2160379-2160642(-)$1	1	51	87	10.0694
(((.(((((...((((......)))).)))))...)	chr16:204265-204551(+)$1	1	38	74	16.4260
((.........................))))).).)	chr2:70314566-70314898(+)$1	1	275	311	9.0902
(((.(.((.(((..(((......))).))).)).))	chr8:101733713-101733973(-)$1	1	97	133	12.9230
((((...(((..((((...)))))))....)))(((	chr17:39845042-39845364(+)$1	1	228	264	10.8948
((((.((.....((((....)))))).))))).)).	chr7:75677322-75677621(+)$1	1	83	119	8.5288
((((((((.((.((((...)))).)).))))).)))	chr19:1241671-1242017(+)$1	1	244	280	10.3923
).(((.(((.....((((....))))....))).))	chr16:88870116-88870414(+)$1	1	153	189	9.8471
(.....(((((((.((......))))))))).).))	chr6:37137955-37138229(+)$1	1	174	210	9.7158
(((.(((((.((.(((....))).)).)))))))))	chrX:152953477-152953693(+)$1	1	58	94	10.1805
((..((.((((((((((((......).)))))....	chr7:5570061-5570331(-)$1	1	218	254	9.6636
.((..(..((..(((......).))..))..)..))	chr1:32403543-32403846(-)$1	1	46	82	10.0373
(((.(((((..(((((.........)))))))))).	chr19:3985312-3985559(-)$1	1	173	209	10.5569
(...(((((...(((....))))))))..))))...	chr11:64001965-64002310(+)$1	1	255	291	10.3588
(.((..(((((.(((......))).))))).))..)	chr20:57466603-57466870(+)$1	1	63	99	11.7935
(((((((((...........................	chr11:2160295-2160563(-)$1	1	161	197	9.4991
.(((((.((((..(((......)))..)))).))))	chr12:6875608-6875935(+)$1	1	146	182	10.1343
(.((..(((((.(((......))).))))).))..)	chr20:57466518-57466792(+)$1	1	148	184	11.7935
(((.(.((.(((..(((......))).))).)).))	chr8:101733773-101734042(-)$1	1	166	202	12.9230
.((.(((.(((..(((.....)))))).))).)).)	chr8:146015122-146015411(-)$1	1	138	174	9.5652
(((.((..(((.((((......))))..))))))))	chr1:32479388-32479656(+)$1	1	185	221	12.3244
.(((((((((((((((......)).)))))))))))	chr15:75230176-75230486(-)$1	1	5	41	12.4272
(((.(((((..(((.........)))..))))).))	chr16:2802591-2802851(+)$1	1	73	109	12.9160
((((((((((..((((...))))..))).)))....	chr3:141595429-141595715(+)$1	1	231	267	10.2755
(((.(((((..............))))).)))..))	chrX:152953601-152953886(+)$1	1	192	228	9.9951
(((((.(((..............)))..))))))))	chr1:26798903-26799202(+)$1	1	191	227	8.9014
(((((((((...(((......))).))))))....)	chr16:58231517-58231871(-)$1	1	221	257	12.8513
(((((.(((...(((((......))))).)))))))	chr19:49468554-49468819(+)$1	1	32	68	12.8176
(((.(((((...((((....))))...))))).)).	chr16:30078454-30078695(+)$1	1	49	85	11.4138
(((((((((.((((((((....)))).)))))))))	chr22:21272027-21272359(+)$1	1	241	277	9.4570
..((((((((((((((......)))).....)))))	chr11:810132-810381(+)$1	1	24	60	10.2562
(((.(((....((((.((....))))))...)))..	chr6:37787506-37787819(+)$1	1	32	68	9.8571
(((.(((((.(.(((........))).).))))).)	chr19:3985275-3985512(-)$1	1	34	70	10.9653
)))))).(((..(((.((......)).)))..))).	chr2:232573166-232573418(+)$1	1	77	113	9.2125

#PSSM
c : 0.33	d : 0.25	i : 0.08	e : 0.05	h : 0.05	[ : 0.05	E : 0.02	a : 0.02	= : 0.02	: : 0.02	! : 0.02	# : 0.02	
c : 0.33	d : 0.13	e : 0.08	b : 0.08	i : 0.08	" : 0.05	[ : 0.05	= : 0.05	: : 0.02	$ : 0.02	h : 0.02	# : 0.02	
c : 0.33	b : 0.13	d : 0.11	" : 0.08	= : 0.08	i : 0.08	e : 0.05	[ : 0.02	^ : 0.02	$ : 0.02	! : 0.02	
[ : 0.33	" : 0.08	b : 0.08	e : 0.08	= : 0.08	i : 0.08	c : 0.05	d : 0.05	! : 0.05	^ : 0.02	$ : 0.02	f : 0.02	
e : 0.30	b : 0.11	c : 0.11	! : 0.08	= : 0.08	i : 0.08	" : 0.05	a : 0.05	^ : 0.02	[ : 0.02	$ : 0.02	f : 0.02	
e : 0.27	[ : 0.16	b : 0.11	= : 0.08	c : 0.08	! : 0.05	i : 0.05	d : 0.02	^ : 0.02	" : 0.02	$ : 0.02	a : 0.02	f : 0.02	
e : 0.30	c : 0.19	b : 0.08	= : 0.08	[ : 0.05	! : 0.05	d : 0.02	# : 0.02	^ : 0.02	" : 0.02	g : 0.02	f : 0.02	i : 0.02	: : 0.02	
e : 0.30	c : 0.19	= : 0.08	d : 0.05	# : 0.05	b : 0.05	f : 0.05	! : 0.05	^ : 0.02	$ : 0.02	g : 0.02	[ : 0.02	i : 0.02	
e : 0.27	c : 0.25	[ : 0.08	= : 0.08	d : 0.05	# : 0.05	f : 0.05	^ : 0.02	$ : 0.02	g : 0.02	b : 0.02	i : 0.02	
" : 0.19	c : 0.19	[ : 0.08	# : 0.05	^ : 0.05	$ : 0.05	b : 0.05	! : 0.05	e : 0.05	= : 0.05	w : 0.05	g : 0.02	f : 0.02	d : 0.02	
" : 0.19	! : 0.16	c : 0.13	^ : 0.05	$ : 0.05	b : 0.05	e : 0.05	d : 0.05	= : 0.05	w : 0.05	g : 0.02	f : 0.02	# : 0.02	a : 0.02	
" : 0.19	! : 0.16	[ : 0.13	c : 0.11	^ : 0.05	$ : 0.05	= : 0.05	w : 0.05	d : 0.05	g : 0.02	b : 0.02	f : 0.02	e : 0.02	
d : 0.30	c : 0.22	! : 0.11	e : 0.08	^ : 0.05	w : 0.05	$ : 0.02	g : 0.02	[ : 0.02	f : 0.02	b : 0.02	= : 0.02	
d : 0.30	c : 0.27	e : 0.11	! : 0.08	^ : 0.05	w : 0.05	$ : 0.02	[ : 0.02	b : 0.02	= : 0.02	
d : 0.33	c : 0.30	e : 0.11	^ : 0.05	b : 0.05	w : 0.05	! : 0.02	a : 0.02	r : 0.02	
d : 0.33	c : 0.13	e : 0.11	o : 0.11	^ : 0.05	b : 0.05	w : 0.05	[ : 0.05	m : 0.02	r : 0.02	q : 0.02	
o : 0.30	m : 0.11	d : 0.08	e : 0.08	l : 0.08	^ : 0.05	c : 0.05	r : 0.05	w : 0.05	b : 0.05	n : 0.02	q : 0.02	
o : 0.38	m : 0.11	d : 0.08	l : 0.08	^ : 0.05	r : 0.05	w : 0.05	b : 0.05	s : 0.02	e : 0.02	n : 0.02	q : 0.02	
o : 0.41	m : 0.19	l : 0.08	^ : 0.05	r : 0.05	w : 0.05	d : 0.02	s : 0.02	a : 0.02	n : 0.02	q : 0.02	
o : 0.44	m : 0.16	d : 0.08	^ : 0.05	r : 0.05	w : 0.05	l : 0.02	s : 0.02	c : 0.02	n : 0.02	q : 0.02	
o : 0.44	d : 0.13	m : 0.08	^ : 0.05	c : 0.05	r : 0.05	w : 0.05	l : 0.02	s : 0.02	n : 0.02	q : 0.02	
o : 0.33	c : 0.16	d : 0.13	m : 0.08	^ : 0.05	r : 0.05	w : 0.05	l : 0.02	s : 0.02	a : 0.02	q : 0.02	
d : 0.33	c : 0.16	o : 0.13	b : 0.08	^ : 0.05	r : 0.05	w : 0.05	s : 0.02	] : 0.02	e : 0.02	q : 0.02	
c : 0.30	d : 0.25	b : 0.11	e : 0.08	^ : 0.05	] : 0.05	o : 0.05	s : 0.02	r : 0.02	2 : 0.02	
d : 0.22	c : 0.22	b : 0.13	] : 0.11	e : 0.08	^ : 0.05	s : 0.02	g : 0.02	o : 0.02	r : 0.02	2 : 0.02	3 : 0.02	
d : 0.22	c : 0.22	e : 0.16	b : 0.11	^ : 0.05	2 : 0.05	s : 0.02	g : 0.02	a : 0.02	= : 0.02	f : 0.02	3 : 0.02	
] : 0.27	2 : 0.16	e : 0.16	3 : 0.05	^ : 0.05	4 : 0.05	c : 0.05	s : 0.02	g : 0.02	= : 0.02	f : 0.02	5 : 0.02	d : 0.02	
e : 0.33	2 : 0.13	c : 0.11	d : 0.11	4 : 0.05	3 : 0.02	g : 0.02	b : 0.02	^ : 0.02	] : 0.02	= : 0.02	f : 0.02	5 : 0.02	a : 0.02	
e : 0.33	c : 0.16	] : 0.11	d : 0.08	3 : 0.05	4 : 0.05	g : 0.02	b : 0.02	2 : 0.02	^ : 0.02	= : 0.02	f : 0.02	5 : 0.02	
e : 0.36	c : 0.25	d : 0.13	4 : 0.05	g : 0.02	2 : 0.02	^ : 0.02	= : 0.02	f : 0.02	5 : 0.02	3 : 0.02	
e : 0.30	c : 0.22	d : 0.13	] : 0.11	2 : 0.05	g : 0.02	^ : 0.02	= : 0.02	f : 0.02	5 : 0.02	3 : 0.02	
e : 0.30	c : 0.16	b : 0.13	] : 0.08	d : 0.05	a : 0.05	= : 0.05	3 : 0.02	^ : 0.02	4 : 0.02	i : 0.02	2 : 0.02	
b : 0.16	c : 0.13	e : 0.13	] : 0.11	3 : 0.08	4 : 0.08	d : 0.05	2 : 0.05	= : 0.05	i : 0.05	a : 0.02	^ : 0.02	
] : 0.13	c : 0.13	3 : 0.11	4 : 0.11	2 : 0.11	b : 0.08	e : 0.08	d : 0.05	= : 0.05	i : 0.05	a : 0.02	^ : 0.02	
c : 0.19	3 : 0.11	b : 0.11	4 : 0.11	] : 0.08	a : 0.05	e : 0.05	2 : 0.05	d : 0.05	= : 0.05	i : 0.05	h : 0.02	^ : 0.02	
c : 0.33	d : 0.13	3 : 0.08	b : 0.08	4 : 0.08	] : 0.05	= : 0.05	i : 0.05	h : 0.02	^ : 0.02	e : 0.02	: : 0.02	

#score	393.5014106883416
#seq	36
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_CDS_m1_run1.txt

#BEAR
cc!!a[dddd[ddddoooooodddddddd]a333c	chr4:74283705-74283943(+)$1	238	181	216	16.0328
a[eeeee####eeeeemmmmeeeee333eeeee]a	chrM:14191-14399(-)$1	208	115	150	14.5077
eeeee[dddd[bb[aooooooa]bb]ddddeeeee	chr16:3767290-3767590(-)$1	300	253	288	13.7016
dddd[eeeee"""bboooooobb]eeeeedddd]e	chr2:216279513-216279767(-)$1	254	172	207	14.7662
gg!!bb[dddd!!bboooooobbdddd]bb]gggg	chr22:50018090-50018335(-)$1	245	184	219	12.7515
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12701-12924(+)$1	223	65	100	21.2647
eee####ddddrrrrrrrrrdddd4444eeeee]=	chr17:7154514-7154776(-)$1	262	53	88	11.8699
a[eeeee####eeeeemmmmeeeee333eeeee]a	chrM:14178-14384(-)$1	206	100	135	14.5077
ccc!!a$$$$$ddddoooooodddda22ccc22cc	chr12:53298425-53298664(-)$1	239	77	112	15.2189
gg!!ccc"""eeeeeooooooeeeee22ccc]ggg	chr2:216297948-216298206(-)$1	258	172	207	14.9282
bb!!eeeee[ffffffooooooffffffeeeee]b	chrM:8040-8259(+)$1	219	132	167	14.6909
[bb!!eeeee[eeeeeooooooeeeee]eeeee33	chr19:1434713-1434941(+)$1	228	34	69	16.1595
e[ccc[dddd[bboooooobbdddd]ccc]eeeee	chr3:133474135-133474436(+)$1	301	112	147	12.3646
ddd[ggggggg[ddddnnnnndddd333ggggggg	chr9:116822419-116822650(-)$1	231	131	166	13.2183
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12757-12999(+)$1	242	9	44	21.2647
#bb[a[==========oooooo==========a]b	chr22:21982894-21983127(-)$1	233	106	141	14.4119
eee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14201-14408(-)$1	207	37	72	14.8693
eee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14217-14423(-)$1	206	52	87	14.8693
[ggggggg"""ddddooooooddddggggggg22d	chr20:5986967-5987238(+)$1	271	72	107	16.5013
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12662-12870(+)$1	208	104	139	21.2647
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12724-12939(+)$1	215	42	77	21.2647
bb!!eeeee[ffffffooooooffffffeeeee]b	chrM:8080-8286(+)$1	206	92	127	14.6909
[ggggggg"""ddddooooooddddggggggg22d	chr20:5986851-5987129(+)$1	278	188	223	16.5013
cc!!dddd"""ddddoooooodddddddd333ccc	chr2:21228768-21229014(-)$1	246	29	64	15.9094
a[eeeee####eeeeemmmmeeeee333eeeee]a	chrM:14157-14378(-)$1	221	94	129	14.5077
e!!eeeee"""a[cccmmmmccc]a333eeeeeee	chr22:19711744-19712005(+)$1	261	189	224	14.5022
c!!aeeeee[ffffffooooooffffffeeeee]a	chrM:8026-8232(+)$1	206	146	181	14.8290
eee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14275-14490(-)$1	215	119	154	14.8693
a[bb[eeeee[bb[bboooooobb333bb]eeeee	chr7:933229-933500(+)$1	271	202	237	14.1520
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12670-12884(+)$1	214	96	131	21.2647
ee"""eeeee[ccc[ammmma]ccc22eeeeeeee	chr5:154135506-154135781(+)$1	275	138	173	13.7627
::ggggggg####ddddmmmmdddd333ggggggg	chr19:47249399-47249656(-)$1	257	190	225	11.5504
bb!!bb[ccc[ddddoooooodddd]ccc22bb22	chr2:11484091-11484339(-)$1	248	143	178	14.3560
==========bb[bboooooobb]bb4444=====	chr1:2125381-2125676(-)$1	295	154	189	13.7153
2dddd:dddd"""cccooooooccc333ddddddd	chr17:80544804-80545042(+)$1	238	153	188	13.4032
"""ffffff!!ddddoooooodddd]ffffff22d	chr8:9629756-9630018(+)$1	262	87	122	15.3019
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12684-12901(+)$1	217	82	117	21.2647
!aggggggg####ddddmmmmdddd4444gggggg	chrM:6579-6802(+)$1	223	150	185	12.8314
bb!!eeeee[ffffffooooooffffffeeeee]b	chrM:8086-8294(+)$1	208	86	121	14.6909
===!!eeeee[ddddoooooodddd333eeeee]=	chrM:12654-12862(+)$1	208	112	147	21.2647
fffff[bb"""ddddoooooodddd333bb]ffff	chr2:216256353-216256638(-)$1	285	196	231	15.6897
eeee[eeeee[ddddoooooodddd]eeeee]eee	chr20:62371657-62371968(+)$1	311	4	39	17.6210
eee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14208-14417(-)$1	209	46	81	14.8693
dddd[eeeee"""bboooooobb]eeeeedddd]e	chr2:216279458-216279687(-)$1	229	92	127	14.7662

#otherMatches

#Seq PSSM
CCUUGGUGAACAGGCGACCAUGCUUUUCAGCUCUG	chr4:74283705-74283943(+)$1	238	181	216	16.0328
GGGUCAGGGUUGAUUCGGGAGGAUCCUAUUGGUGC	chrM:14191-14399(-)$1	208	115	150	14.5077
GCCGGCACCUGCUUCACAGGCGUGGGAGGUCCGGC	chr16:3767290-3767590(-)$1	300	253	288	13.7016
UCUCACAUUUCCAAGUACAUUCUCAGGUGGAGACC	chr2:216279513-216279767(-)$1	254	172	207	14.7662
GAUAGAAGGGCCAGUGAGGAGAUGCCCAUCCUCCA	chr22:50018090-50018335(-)$1	245	184	219	12.7515
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12701-12924(+)$1	223	65	100	21.2647
GCCACUCGGGGCCCCCGUUCCCCCUcccggcggcg	chr17:7154514-7154776(-)$1	262	53	88	11.8699
GGGUCAGGGUUGAUUCGGGAGGAUCCUAUUGGUGC	chrM:14178-14384(-)$1	206	100	135	14.5077
UGGGAGGCAUCACCGCAGUUACGGUCAACCAGAGC	chr12:53298425-53298664(-)$1	239	77	112	15.2189
UUGUGUAAAAUGAUGCCAAAAUAUCAAAUAUGAAU	chr2:216297948-216298206(-)$1	258	172	207	14.9282
GCUCUGAAAUCUGUGGAGCAAACCACAGUUUCAUG	chrM:8040-8259(+)$1	219	132	167	14.6909
AGGACUUGAGUGGCUUCGGACAGGGCUUCUCAGAC	chr19:1434713-1434941(+)$1	228	34	69	16.1595
GAUGGGACGGACUUCCCCCAGCUGUGUCAACUGUG	chr3:133474135-133474436(+)$1	301	112	147	12.3646
ACAACUGGCCGGUCUGCAAGUCAGAGGAUGGCCAG	chr9:116822419-116822650(-)$1	231	131	166	13.2183
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12757-12999(+)$1	242	9	44	21.2647
CGCGUGUCCGGGGCCCUGGCGCGGGUCCUGGAAGG	chr22:21982894-21983127(-)$1	233	106	141	14.4119
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14201-14408(-)$1	207	37	72	14.8693
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14217-14423(-)$1	206	52	87	14.8693
AGGCUGCGUCCGGCCGCUCUUGGCUUGCGGCUGCC	chr20:5986967-5987238(+)$1	271	72	107	16.5013
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12662-12870(+)$1	208	104	139	21.2647
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12724-12939(+)$1	215	42	77	21.2647
GCUCUGAAAUCUGUGGAGCAAACCACAGUUUCAUG	chrM:8080-8286(+)$1	206	92	127	14.6909
AGGCUGCGUCCGGCCGCUCUUGGCUUGCGGCUGCC	chr20:5986851-5987129(+)$1	278	188	223	16.5013
CAAAGCCACCCUGGAACUCUCUCCAUGGCAAAUGU	chr2:21228768-21229014(-)$1	246	29	64	15.9094
GGGUCAGGGUUGAUUCGGGAGGAUCCUAUUGGUGC	chrM:14157-14378(-)$1	221	94	129	14.5077
cUGUCGCUGACCGACCCGCUGGUGGCCGAGCGAGC	chr22:19711744-19712005(+)$1	261	189	224	14.5022
GCUCUGAAAUCUGUGGAGCAAACCACAGUUUCAUG	chrM:8026-8232(+)$1	206	146	181	14.8290
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14275-14490(-)$1	215	119	154	14.8693
CGGGACCCCAUGUACAACGAGGUGAGAGCUUGGGG	chr7:933229-933500(+)$1	271	202	237	14.1520
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12670-12884(+)$1	214	96	131	21.2647
ggcgcggggcgccgggACUUCGUGGAAGCCCCCCC	chr5:154135506-154135781(+)$1	275	138	173	13.7627
CGAGUGGGCGCGCUUCGAAGCCGAGAAAGCCCGCU	chr19:47249399-47249656(-)$1	257	190	225	11.5504
GGCGCGAGCCGCCAGAGGAAGCUGGAGGCGCUGAU	chr2:11484091-11484339(-)$1	248	143	178	14.3560
GGCUCUGGGCCGAGCUACUGCGCACGGUGAGCCCG	chr1:2125381-2125676(-)$1	295	154	189	13.7153
CGCCAUUGGCCACGCCACGCUCGGCACUGCCAGCC	chr17:80544804-80545042(+)$1	238	153	188	13.4032
aaugagggacagauaggcuuauauuaucucucuag	chr8:9629756-9630018(+)$1	262	87	122	15.3019
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12684-12901(+)$1	217	82	117	21.2647
GCUAUGAUAUCAAUUGGCUUCCUAGGGUUUAUCGU	chrM:6579-6802(+)$1	223	150	185	12.8314
GCUCUGAAAUCUGUGGAGCAAACCACAGUUUCAUG	chrM:8086-8294(+)$1	208	86	121	14.6909
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCAU	chrM:12654-12862(+)$1	208	112	147	21.2647
UUCCUGGUGCGUUACUCACCUGUGAAAAAUGAGGA	chr2:216256353-216256638(-)$1	285	196	231	15.6897
GCGGAGGUUGAGGGACCCCCCUCCCCCGGCCACCG	chr20:62371657-62371968(+)$1	311	4	39	17.6210
UUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14208-14417(-)$1	209	46	81	14.8693
UCUCACAUUUCCAAGUACAUUCUCAGGUGGAGACC	chr2:216279458-216279687(-)$1	229	92	127	14.7662

#DB
((..(.((((.((((......)))))))).)...)	chr4:74283705-74283943(+)$1	1	181	216	16.0328
(.(((((....(((((....)))))...))))).)	chrM:14191-14399(-)$1	1	115	150	14.5077
(((((.((((.((.(......).)).)))))))))	chr16:3767290-3767590(-)$1	1	253	288	13.7016
((((.(((((...((......)).))))))))).)	chr2:216279513-216279767(-)$1	1	172	207	14.7662
((..((.((((..((......)))))).)).))))	chr22:50018090-50018335(-)$1	1	184	219	12.7515
(((..(((((.((((......))))...))))).)	chrM:12701-12924(+)$1	1	65	100	21.2647
(((....((((.........))))....))))).)	chr17:7154514-7154776(-)$1	1	53	88	11.8699
(.(((((....(((((....)))))...))))).)	chrM:14178-14384(-)$1	1	100	135	14.5077
(((..(.....((((......)))))..)))..))	chr12:53298425-53298664(-)$1	1	77	112	15.2189
((..(((...(((((......)))))..))).)))	chr2:216297948-216298206(-)$1	1	172	207	14.9282
((..(((((.((((((......))))))))))).)	chrM:8040-8259(+)$1	1	132	167	14.6909
.((..(((((.(((((......))))).)))))..	chr19:1434713-1434941(+)$1	1	34	69	16.1595
(.(((.((((.((......)))))).))).)))))	chr3:133474135-133474436(+)$1	1	112	147	12.3646
(((.(((((((.((((.....))))...)))))))	chr9:116822419-116822650(-)$1	1	131	166	13.2183
(((..(((((.((((......))))...))))).)	chrM:12757-12999(+)$1	1	9	44	21.2647
.((.(.((((((((((......))))))))))).)	chr22:21982894-21983127(-)$1	1	106	141	14.4119
(((.((((.((.(((......)))..)).)))).)	chrM:14201-14408(-)$1	1	37	72	14.8693
(((.((((.((.(((......)))..)).)))).)	chrM:14217-14423(-)$1	1	52	87	14.8693
.(((((((...((((......)))))))))))..)	chr20:5986967-5987238(+)$1	1	72	107	16.5013
(((..(((((.((((......))))...))))).)	chrM:12662-12870(+)$1	1	104	139	21.2647
(((..(((((.((((......))))...))))).)	chrM:12724-12939(+)$1	1	42	77	21.2647
((..(((((.((((((......))))))))))).)	chrM:8080-8286(+)$1	1	92	127	14.6909
.(((((((...((((......)))))))))))..)	chr20:5986851-5987129(+)$1	1	188	223	16.5013
((..((((...((((......))))))))...)))	chr2:21228768-21229014(-)$1	1	29	64	15.9094
(.(((((....(((((....)))))...))))).)	chrM:14157-14378(-)$1	1	94	129	14.5077
(..(((((...(.(((....))).)...)))))))	chr22:19711744-19712005(+)$1	1	189	224	14.5022
(..((((((.((((((......))))))))))).)	chrM:8026-8232(+)$1	1	146	181	14.8290
(((.((((.((.(((......)))..)).)))).)	chrM:14275-14490(-)$1	1	119	154	14.8693
(.((.(((((.((.((......))...)).)))))	chr7:933229-933500(+)$1	1	202	237	14.1520
(((..(((((.((((......))))...))))).)	chrM:12670-12884(+)$1	1	96	131	21.2647
((...(((((.(((.(....).)))..))))))))	chr5:154135506-154135781(+)$1	1	138	173	13.7627
..(((((((....((((....))))...)))))))	chr19:47249399-47249656(-)$1	1	190	225	11.5504
((..((.(((.((((......)))).)))..))..	chr2:11484091-11484339(-)$1	1	143	178	14.3560
((((((((((((.((......)).))....)))))	chr1:2125381-2125676(-)$1	1	154	189	13.7153
.)))).((((...(((......)))...))))(((	chr17:80544804-80545042(+)$1	1	153	188	13.4032
...((((((..((((......)))).))))))..)	chr8:9629756-9630018(+)$1	1	87	122	15.3019
(((..(((((.((((......))))...))))).)	chrM:12684-12901(+)$1	1	82	117	21.2647
.((((((((....((((....))))....))))))	chrM:6579-6802(+)$1	1	150	185	12.8314
((..(((((.((((((......))))))))))).)	chrM:8086-8294(+)$1	1	86	121	14.6909
(((..(((((.((((......))))...))))).)	chrM:12654-12862(+)$1	1	112	147	21.2647
(((((.((...((((......))))...)).))))	chr2:216256353-216256638(-)$1	1	196	231	15.6897
((((.(((((.((((......)))).))))).)))	chr20:62371657-62371968(+)$1	1	4	39	17.6210
(((.((((.((.(((......)))..)).)))).)	chrM:14208-14417(-)$1	1	46	81	14.8693
((((.(((((...((......)).))))))))).)	chr2:216279458-216279687(-)$1	1	92	127	14.7662

#PSSM
e : 0.22	= : 0.18	c : 0.09	a : 0.09	b : 0.09	d : 0.06	[ : 0.06	g : 0.04	# : 0.02	: : 0.02	2 : 0.02	" : 0.02	! : 0.02	f : 0.02	
e : 0.18	= : 0.18	b : 0.13	[ : 0.11	d : 0.09	g : 0.09	c : 0.06	! : 0.04	: : 0.02	" : 0.02	a : 0.02	f : 0.02	
! : 0.22	e : 0.22	= : 0.18	d : 0.09	g : 0.09	b : 0.06	c : 0.04	" : 0.04	f : 0.02	
! : 0.38	e : 0.13	[ : 0.13	g : 0.09	d : 0.06	f : 0.04	# : 0.02	c : 0.02	a : 0.02	b : 0.02	" : 0.02	= : 0.02	
e : 0.20	! : 0.20	d : 0.13	g : 0.11	[ : 0.09	a : 0.04	b : 0.04	c : 0.04	f : 0.04	# : 0.02	" : 0.02	= : 0.02	
e : 0.47	[ : 0.11	g : 0.11	d : 0.11	b : 0.04	# : 0.02	a : 0.02	c : 0.02	= : 0.02	: : 0.02	f : 0.02	
e : 0.47	d : 0.20	g : 0.11	[ : 0.04	= : 0.04	# : 0.02	$ : 0.02	c : 0.02	f : 0.02	b : 0.02	
e : 0.40	d : 0.25	g : 0.11	# : 0.06	= : 0.04	$ : 0.02	" : 0.02	c : 0.02	f : 0.02	b : 0.02	
e : 0.38	d : 0.13	" : 0.13	[ : 0.09	# : 0.06	g : 0.06	= : 0.04	$ : 0.02	c : 0.02	f : 0.02	
e : 0.29	d : 0.13	" : 0.13	# : 0.11	[ : 0.09	b : 0.09	= : 0.04	$ : 0.02	g : 0.02	c : 0.02	! : 0.02	
[ : 0.34	" : 0.18	# : 0.11	b : 0.11	f : 0.09	d : 0.04	$ : 0.02	e : 0.02	g : 0.02	= : 0.02	! : 0.02	
d : 0.36	e : 0.11	[ : 0.11	b : 0.09	f : 0.09	" : 0.06	# : 0.04	! : 0.02	r : 0.02	= : 0.02	a : 0.02	c : 0.02	
d : 0.38	e : 0.11	c : 0.11	f : 0.09	b : 0.06	" : 0.06	[ : 0.04	# : 0.04	! : 0.02	r : 0.02	= : 0.02	
d : 0.43	c : 0.15	e : 0.11	b : 0.09	f : 0.09	[ : 0.04	r : 0.02	o : 0.02	= : 0.02	
d : 0.43	c : 0.13	e : 0.11	b : 0.11	f : 0.09	a : 0.02	r : 0.02	o : 0.02	= : 0.02	[ : 0.02	
o : 0.61	e : 0.09	f : 0.09	d : 0.06	c : 0.04	r : 0.02	= : 0.02	b : 0.02	a : 0.02	
o : 0.79	m : 0.11	d : 0.04	r : 0.02	n : 0.02	
o : 0.79	m : 0.15	r : 0.02	n : 0.02	
o : 0.79	m : 0.15	r : 0.02	n : 0.02	
o : 0.77	m : 0.15	r : 0.02	b : 0.02	n : 0.02	
o : 0.77	e : 0.06	m : 0.04	d : 0.02	b : 0.02	n : 0.02	c : 0.02	a : 0.02	
d : 0.47	o : 0.18	c : 0.11	e : 0.09	b : 0.09	a : 0.02	] : 0.02	
d : 0.47	c : 0.15	e : 0.11	b : 0.11	f : 0.09	] : 0.02	= : 0.02	
d : 0.49	c : 0.13	e : 0.11	] : 0.09	f : 0.09	b : 0.04	= : 0.02	
d : 0.47	e : 0.15	f : 0.09	2 : 0.09	b : 0.04	c : 0.04	4 : 0.02	= : 0.02	a : 0.02	3 : 0.02	
3 : 0.36	] : 0.11	2 : 0.11	e : 0.09	f : 0.09	d : 0.06	4 : 0.04	g : 0.04	a : 0.02	= : 0.02	b : 0.02	
3 : 0.36	f : 0.11	d : 0.09	e : 0.09	b : 0.09	4 : 0.06	2 : 0.06	c : 0.04	g : 0.04	= : 0.02	
3 : 0.34	f : 0.11	b : 0.11	e : 0.09	d : 0.06	4 : 0.06	] : 0.04	2 : 0.04	c : 0.04	g : 0.04	= : 0.02	
e : 0.47	d : 0.09	c : 0.09	g : 0.09	] : 0.09	b : 0.06	4 : 0.04	= : 0.02	f : 0.02	
e : 0.43	d : 0.18	g : 0.11	] : 0.06	b : 0.04	c : 0.04	= : 0.02	3 : 0.02	2 : 0.02	4 : 0.02	f : 0.02	
e : 0.49	d : 0.15	g : 0.11	] : 0.04	c : 0.04	= : 0.04	a : 0.02	3 : 0.02	2 : 0.02	f : 0.02	
e : 0.47	d : 0.15	g : 0.13	3 : 0.04	] : 0.04	= : 0.04	f : 0.04	2 : 0.02	b : 0.02	
e : 0.49	d : 0.15	g : 0.11	2 : 0.09	3 : 0.02	a : 0.02	c : 0.02	b : 0.02	= : 0.02	f : 0.02	
] : 0.49	e : 0.13	g : 0.11	2 : 0.09	3 : 0.04	c : 0.04	= : 0.02	d : 0.02	f : 0.02	
e : 0.27	= : 0.20	g : 0.11	a : 0.09	b : 0.09	d : 0.09	c : 0.06	3 : 0.02	2 : 0.02	f : 0.02	

#score	686.7444333486343
#seq	44
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_UTR_m1_run1.txt

#BEAR
===========[ccc[bbnnnnnbb22ccc]=========	chr1:36180771-36181067(-)$1	296	126	166	18.7415
ddd"""==========oooooo==========]ddddbb]	chr16:31343238-31343518(+)$1	280	79	119	19.6811
ccc!!a[ccc[gggggggmmmmgggggggccc]a]ccc]c	chr20:1165039-1165285(-)$1	246	8	48	15.6997
:================annnnna]===============	chr9:138899049-138899329(-)$1	280	28	68	22.8551
a[bb####==========mmmm==========22bb]abb	chr17:76794267-76794523(-)$1	256	143	183	20.1449
========="""bbddddmmmmdddd]bb4444=======	chr10:102309504-102309804(+)$1	300	96	136	17.8165
gggggg"""ccc[eeeeemmmmeeeee]ccc333gggggg	chr9:94710974-94711248(-)$1	274	23	63	14.7822
===============[bbmmmmbb]===============	chr6:34555449-34555698(-)$1	249	106	146	23.6261
"=================mmmm=================3	chr6:47592317-47592573(+)$1	256	118	158	25.2088
gggggg!!==========rrrrrrrrr==========444	chr2:232673390-232673698(+)$1	308	232	272	19.9419
c[ggggggg"""a[cccnnnnncccaggggggg]ccc444	chr15:40568804-40569172(+)$1	368	314	354	15.6502
bb================oooooo================	chr11:791023-791318(-)$1	295	82	122	24.2531
==================qqqqqqqq==============	chr19:47774827-47775044(+)$1	217	136	176	20.4768
b[bb[============qqqqqqqq============]bb	chr19:41195331-41195568(-)$1	237	172	212	18.7500
ccc[ccc"""gggggggammmma]ggggggg333ccc22c	chr15:37391248-37391555(-)$1	307	170	210	16.5064
ccc####ggggggg[cccmmmmccc]ggggggg4444ccc	chr5:126250401-126250658(-)$1	257	126	166	16.9637
]ccc===========cccmmmmccc22===========BB	chr22:21801983-21802291(+)$1	308	112	152	20.3078
!!iiiiiiiii[ffffffnnnnnffffff]iiiiiiiii2	chr15:68500174-68500409(-)$1	235	174	214	16.2671
ee!!ggggggg[a[ddddllldddd]a333ggggggg444	chr20:61519820-61520134(-)$1	314	150	190	14.6979
dbb[a[a[===========qqqqqqqq===========aa	chr3:125075991-125076273(-)$1	282	92	132	17.0733
b[a[ggggggg[bb[cccmmmmccc333bb]ggggggg]a	chr19:39797226-39797486(-)$1	260	107	147	16.2400
dddd[iiiiiiiii[cccmmmmccc]iiiiiiiii22ddd	chr4:16163621-16163886(-)$1	265	25	65	17.9509
gggg[=============mmmm=============]gggg	chr9:140259762-140260055(-)$1	293	53	93	23.3963
b[===========[ggggggg[================[b	chr5:1222663-1222923(+)$1	260	30	70	19.6218
&bb[==============mmmm==============bbcc	chr20:32264118-32264372(-)$1	254	171	211	22.2209
d[eeeee!!ggggggg[ammmma]ggggggg]eeeee]dd	chr15:65281683-65281930(-)$1	247	182	222	14.6515
dd[a!!===========aooooooa]===========]a]	chr2:3461735-3461984(+)$1	249	71	111	22.6605
g================annnnna]===============	chr9:138899132-138899379(-)$1	247	78	118	23.6022
===============[aooooooa]===============	chr19:40738503-40738732(-)$1	229	70	110	24.2510
:::===========ddddmmmmdddd22===========:	chr12:53806636-53806896(+)$1	260	209	249	16.9674
cc[===============mmmm===============]cc	chr5:149233777-149234041(+)$1	264	113	153	24.3289
:===========!!bbnnnnnbb22===============	chr17:76793997-76794267(-)$1	270	78	118	18.7430
cc[a!!==========oooooo==========accciiii	chr6:43148029-43148272(+)$1	243	41	81	21.6802
=======[==========mmmm==========]=======	chr17:7107556-7107842(-)$1	286	58	98	25.0580
BB================mmmm================::	chr6:47592373-47592637(+)$1	264	63	103	21.3963
####==========qqqqqqqq==========4444====	chr16:89980757-89981047(+)$1	290	132	172	18.0261
============!!ddddrrrrrrrrrdddd22=======	chr19:41195702-41196068(-)$1	366	257	297	16.6057
==================oooooo================	chr16:29679262-29679559(+)$1	297	20	60	24.7761
e!!ggggggg"""cccoooooocccggggggg22eeeeea	chr2:135208063-135208309(+)$1	246	179	219	15.2329
====$$$$$eeeee[cccmmmmccc]eeeee]========	chr17:36882462-36882717(+)$1	255	75	115	16.3014
gggdddd[a[bb[===========================	chr19:47774844-47775080(+)$1	236	96	136	17.9916
::================mmmm================::	chr1:150208205-150208508(-)$1	303	93	133	21.1456
===============[bbmmmmbb]===============	chr6:34555385-34555649(-)$1	264	57	97	23.6261

#otherMatches

#Seq PSSM
GUGCAUGUGUAGACAGGUACCCAGCAGUGUGUGUAUAUGC	chr1:36180771-36181067(-)$1	296	126	166	18.7415
gugugugcaugugugcgagugugugcaugugugugcUCAG	chr16:31343238-31343518(+)$1	280	79	119	19.6811
guguguguguguacgcgcgugugcgugugACGGGGUACUC	chr20:1165039-1165285(-)$1	246	8	48	15.6997
cgcgugugugugcgcgucuguguguaugugugcacgcgcg	chr9:138899049-138899329(-)$1	280	28	68	22.8551
gggcuguguaucuggcacauguguguuggguggugugugu	chr17:76794267-76794523(-)$1	256	143	183	20.1449
GAGGAUGCGUGUGGAUGUGUGUGCAUGCCUGAGUGCGUUU	chr10:102309504-102309804(+)$1	300	96	136	17.8165
CUGGAGGAGGCGGCGUUAGCUCUGGCGGUGCAGACUCCGG	chr9:94710974-94711248(-)$1	274	23	63	14.7822
AGGUGUGUGUGUGUGGAUGGAUGUGCACGUGUGCAUGCUU	chr6:34555449-34555698(-)$1	249	106	146	23.6261
uguguguguguguguguguguguauauauauauauauauu	chr6:47592317-47592573(+)$1	256	118	158	25.2088
GAUUUAAUGUAUGUGACUGGGGUUUGGGGUUGCAUACCUG	chr2:232673390-232673698(+)$1	308	232	272	19.9419
CUCUCCACUCCUGUGUCUACCUGGCCAGUGGAGUGGUCCA	chr15:40568804-40569172(+)$1	368	314	354	15.6502
gugcauguguguguguaugugugugugcaugcgugugugu	chr11:791023-791318(-)$1	295	82	122	24.2531
gugugugugugugugugugugugugugcgcgcgcgcgcgc	chr19:47774827-47775044(+)$1	217	136	176	20.4768
uggcuguguaugugugugugugugugCACGCGUACGCUGC	chr19:41195331-41195568(-)$1	237	172	212	18.7500
GUGUGUGUGUGCGUGUGCAAUCGUUACACGCUUUCGCCUC	chr15:37391248-37391555(-)$1	307	170	210	16.5064
UACUGAAGCACGGUAAUAGCUAUGUGACugugugugugug	chr5:126250401-126250658(-)$1	257	126	166	16.9637
ugugugucuauguguggugugugCCGUAUGCAUGGGCAGA	chr22:21801983-21802291(+)$1	308	112	152	20.3078
AUCGGAUUCUGUUUUAGAGUGUUUCUGGGCCAGGAUCCGG	chr15:68500174-68500409(-)$1	235	174	214	16.2671
UCCCCUGUCUCAGCGGACCCUGUCCUCACGGAGAUAGCCC	chr20:61519820-61520134(-)$1	314	150	190	14.6979
AAgugcgugcgugcgugcgugugucugugcgCGUGCGCCC	chr3:125075991-125076273(-)$1	282	92	132	17.0733
uguguguguUGGGGGAGGGUgaccuagauugcagcauaag	chr19:39797226-39797486(-)$1	260	107	147	16.2400
CAGGGUGGGCCUGUGCUGGGGAUGGGGCAGGCCUGGGUCU	chr4:16163621-16163886(-)$1	265	25	65	17.9509
ugugugugcaugcauguguguguacgugugugugccugca	chr9:140259762-140260055(-)$1	293	53	93	23.3963
uguauaugugugugaugugugcucgugugugugCAUAUUC	chr5:1222663-1222923(+)$1	260	30	70	19.6218
UCCACAUGUGUGUGCAUGAGUCCAUGUGUGCGCGUGGGGG	chr20:32264118-32264372(-)$1	254	171	211	22.2209
UGUGUGUGAGUCUCCAGCGGGAGGUGGGGGCGGCACAGGG	chr15:65281683-65281930(-)$1	247	182	222	14.6515
GGGGAGAGAGGCCUCUGCGUCGGGGACAGAGGCCUCUGCG	chr2:3461735-3461984(+)$1	249	71	111	22.6605
cgcgugugugugcgcgucuguguguaugugugcacgcgcg	chr9:138899132-138899379(-)$1	247	78	118	23.6022
ACGCAGGCACACGUGGGUGUGUGUGCAUGUGUGUUUGUGU	chr19:40738503-40738732(-)$1	229	70	110	24.2510
UUGUAUGUGUGGGUGAAUGUGUGUUCAUGCCCGUAUAUGU	chr12:53806636-53806896(+)$1	260	209	249	16.9674
gggguguguguguguguaucugugCACACAUACACACGUC	chr5:149233777-149234041(+)$1	264	113	153	24.3289
GGCAUGUGUUCUGGUCACUUGGAGAAGGGCAUGUGUGGGG	chr17:76793997-76794267(-)$1	270	78	118	18.7430
UGCGCUGUCCCAGGCAUGCAGCUGCCUGGGGCCCAAGUUG	chr6:43148029-43148272(+)$1	243	41	81	21.6802
ugugcaucugugcgugugugugcgcgugcgcaugugcacg	chr17:7107556-7107842(-)$1	286	58	98	25.0580
guguguguguguguguguguguauauauauauauauauuu	chr6:47592373-47592637(+)$1	264	63	103	21.3963
Uugugugugcgccugugugugggggugcacauuugugugu	chr16:89980757-89981047(+)$1	290	132	172	18.0261
UCCCAGGCACAGCCACUUCUCAAAACAAGGUCCCUGUGCC	chr19:41195702-41196068(-)$1	366	257	297	16.6057
gcacaugugugugcgcaugugugugugugcgcgcaugugu	chr16:29679262-29679559(+)$1	297	20	60	24.7761
GAGGCCUCUGCCCUGAGCAUCAUCACAGGGGCGCCUCCAG	chr2:135208063-135208309(+)$1	246	179	219	15.2329
CCUUUGUUUGCACUAUUGGACUUAGGAGUGCCGAGGGUGG	chr17:36882462-36882717(+)$1	255	75	115	16.3014
GCUGCCugugugugugugugugugugugugugugugugug	chr19:47774844-47775080(+)$1	236	96	136	17.9916
guguauguguguguguaugugugugcgcgcgugcgugcgu	chr1:150208205-150208508(-)$1	303	93	133	21.1456
AGGUGUGUGUGUGUGGAUGGAUGUGCACGUGUGCAUGCUU	chr6:34555385-34555649(-)$1	264	57	97	23.6261

#DB
(((((((((((.(((.((.....))..))).)))))))))	chr1:36180771-36181067(-)$1	1	126	166	18.7415
(((...((((((((((......)))))))))).)))))).	chr16:31343238-31343518(+)$1	1	79	119	19.6811
(((..(.(((.(((((((....)))))))))).).))).)	chr20:1165039-1165285(-)$1	1	8	48	15.6997
.(((((((((((((((((.....).)))))))))))))))	chr9:138899049-138899329(-)$1	1	28	68	22.8551
(.((....((((((((((....))))))))))..)).)))	chr17:76794267-76794523(-)$1	1	143	183	20.1449
(((((((((...((((((....)))).))....)))))))	chr10:102309504-102309804(+)$1	1	96	136	17.8165
((((((...(((.(((((....))))).)))...))))))	chr9:94710974-94711248(-)$1	1	23	63	14.7822
(((((((((((((((.((....)).)))))))))))))))	chr6:34555449-34555698(-)$1	1	106	146	23.6261
.(((((((((((((((((....))))))))))))))))).	chr6:47592317-47592573(+)$1	1	118	158	25.2088
((((((..((((((((((.........))))))))))...	chr2:232673390-232673698(+)$1	1	232	272	19.9419
(.(((((((...(.(((.....))))))))))).)))...	chr15:40568804-40569172(+)$1	1	314	354	15.6502
))((((((((((((((((......))))))))))))))))	chr11:791023-791318(-)$1	1	82	122	24.2531
((((((((((((((((((........))))))))))))))	chr19:47774827-47775044(+)$1	1	136	176	20.4768
(.((.((((((((((((........)))))))))))).))	chr19:41195331-41195568(-)$1	1	172	212	18.7500
(((.(((...((((((((....).)))))))...)))..)	chr15:37391248-37391555(-)$1	1	170	210	16.5064
(((....(((((((.(((....))).)))))))....)))	chr5:126250401-126250658(-)$1	1	126	166	16.9637
.)))((((((((((((((....)))..)))))))))))))	chr22:21801983-21802291(+)$1	1	112	152	20.3078
..(((((((((.((((((.....)))))).))))))))).	chr15:68500174-68500409(-)$1	1	174	214	16.2671
((..(((((((.(.((((...)))).)...)))))))...	chr20:61519820-61520134(-)$1	1	150	190	14.6979
(((.(.(.(((((((((((........)))))))))))))	chr3:125075991-125076273(-)$1	1	92	132	17.0733
(.(.(((((((.((.(((....)))...)).))))))).)	chr19:39797226-39797486(-)$1	1	107	147	16.2400
((((.(((((((((.(((....))).)))))))))..)))	chr4:16163621-16163886(-)$1	1	25	65	17.9509
((((.(((((((((((((....))))))))))))).))))	chr9:140259762-140260055(-)$1	1	53	93	23.3963
(.(((((((((((.(((((((.((((((((((((((((.(	chr5:1222663-1222923(+)$1	1	30	70	19.6218
.((.((((((((((((((....))))))))))))))))))	chr20:32264118-32264372(-)$1	1	171	211	22.2209
(.(((((..(((((((.(....).))))))).))))).))	chr15:65281683-65281930(-)$1	1	182	222	14.6515
((.(..((((((((((((......).))))))))))).).	chr2:3461735-3461984(+)$1	1	71	111	22.6605
((((((((((((((((((.....).)))))))))))))))	chr9:138899132-138899379(-)$1	1	78	118	23.6022
(((((((((((((((.(......).)))))))))))))))	chr19:40738503-40738732(-)$1	1	70	110	24.2510
...(((((((((((((((....))))..))))))))))).	chr12:53806636-53806896(+)$1	1	209	249	16.9674
((.(((((((((((((((....))))))))))))))).))	chr5:149233777-149234041(+)$1	1	113	153	24.3289
.(((((((((((..((.....))..)))))))))))((((	chr17:76793997-76794267(-)$1	1	78	118	18.7430
((.(..((((((((((......))))))))))))))))))	chr6:43148029-43148272(+)$1	1	41	81	21.6802
(((((((.((((((((((....)))))))))).)))))))	chr17:7107556-7107842(-)$1	1	58	98	25.0580
((((((((((((((((((....))))))))))))))))..	chr6:47592373-47592637(+)$1	1	63	103	21.3963
....((((((((((........))))))))))....))))	chr16:89980757-89981047(+)$1	1	132	172	18.0261
((((((((((((..((((.........))))..)))))))	chr19:41195702-41196068(-)$1	1	257	297	16.6057
((((((((((((((((((......))))))))))))))))	chr16:29679262-29679559(+)$1	1	20	60	24.7761
(..(((((((...(((......))))))))))..))))))	chr2:135208063-135208309(+)$1	1	179	219	15.2329
((((.....(((((.(((....))).))))).))))))))	chr17:36882462-36882717(+)$1	1	75	115	16.3014
(((((((.(.((.(((((((((((((((((((((((((((	chr19:47774844-47775080(+)$1	1	96	136	17.9916
..((((((((((((((((....))))))))))))))))..	chr1:150208205-150208508(-)$1	1	93	133	21.1456
(((((((((((((((.((....)).)))))))))))))))	chr6:34555385-34555649(-)$1	1	57	97	23.6261

#PSSM
= : 0.23	c : 0.13	d : 0.11	g : 0.11	: : 0.09	b : 0.09	e : 0.04	a : 0.02	" : 0.02	] : 0.02	! : 0.02	& : 0.02	B : 0.02	# : 0.02	
= : 0.32	c : 0.13	[ : 0.13	g : 0.09	d : 0.06	b : 0.06	! : 0.04	: : 0.04	e : 0.02	B : 0.02	# : 0.02	
= : 0.41	g : 0.11	c : 0.09	b : 0.09	[ : 0.06	d : 0.04	! : 0.04	i : 0.02	a : 0.02	e : 0.02	: : 0.02	# : 0.02	
= : 0.46	g : 0.11	[ : 0.09	! : 0.04	b : 0.04	# : 0.04	d : 0.04	a : 0.04	" : 0.02	c : 0.02	i : 0.02	e : 0.02	
= : 0.51	g : 0.13	! : 0.06	[ : 0.06	# : 0.04	" : 0.02	c : 0.02	i : 0.02	a : 0.02	e : 0.02	$ : 0.02	d : 0.02	
= : 0.55	g : 0.13	# : 0.04	i : 0.04	! : 0.04	" : 0.02	a : 0.02	c : 0.02	[ : 0.02	e : 0.02	$ : 0.02	d : 0.02	
= : 0.62	g : 0.09	# : 0.04	i : 0.04	[ : 0.02	" : 0.02	! : 0.02	c : 0.02	a : 0.02	e : 0.02	$ : 0.02	d : 0.02	
= : 0.60	g : 0.11	[ : 0.06	" : 0.04	! : 0.04	i : 0.04	c : 0.02	# : 0.02	$ : 0.02	
= : 0.69	g : 0.11	" : 0.04	i : 0.04	c : 0.02	! : 0.02	$ : 0.02	a : 0.02	
= : 0.67	g : 0.11	" : 0.06	c : 0.04	i : 0.04	e : 0.02	[ : 0.02	
= : 0.67	g : 0.11	" : 0.06	i : 0.04	[ : 0.02	c : 0.02	e : 0.02	b : 0.02	
= : 0.65	[ : 0.09	g : 0.09	" : 0.06	c : 0.02	i : 0.02	e : 0.02	b : 0.02	
= : 0.60	g : 0.09	b : 0.04	[ : 0.04	a : 0.04	! : 0.04	c : 0.02	f : 0.02	i : 0.02	" : 0.02	e : 0.02	
= : 0.60	g : 0.09	[ : 0.06	c : 0.04	b : 0.04	e : 0.04	! : 0.04	f : 0.02	i : 0.02	
= : 0.55	g : 0.09	d : 0.09	[ : 0.09	c : 0.06	e : 0.02	f : 0.02	b : 0.02	q : 0.02	
= : 0.46	c : 0.16	[ : 0.09	g : 0.09	d : 0.09	e : 0.02	f : 0.02	b : 0.02	q : 0.02	
= : 0.41	c : 0.13	d : 0.09	b : 0.06	o : 0.06	g : 0.06	e : 0.02	f : 0.02	[ : 0.02	a : 0.02	n : 0.02	q : 0.02	
= : 0.32	a : 0.11	c : 0.11	o : 0.09	d : 0.09	b : 0.06	g : 0.04	n : 0.04	q : 0.04	e : 0.02	f : 0.02	
m : 0.48	o : 0.16	n : 0.13	q : 0.06	r : 0.04	= : 0.04	l : 0.02	g : 0.02	
m : 0.48	o : 0.16	n : 0.13	q : 0.09	r : 0.04	l : 0.02	g : 0.02	= : 0.02	
m : 0.48	o : 0.16	n : 0.13	q : 0.09	r : 0.04	l : 0.02	g : 0.02	= : 0.02	
m : 0.48	o : 0.16	n : 0.11	q : 0.09	r : 0.04	d : 0.02	[ : 0.02	b : 0.02	= : 0.02	
= : 0.30	c : 0.16	n : 0.09	o : 0.09	d : 0.06	b : 0.06	q : 0.06	r : 0.04	a : 0.04	g : 0.02	e : 0.02	
= : 0.30	c : 0.16	b : 0.06	a : 0.06	d : 0.06	o : 0.06	q : 0.06	r : 0.04	] : 0.04	g : 0.02	e : 0.02	f : 0.02	2 : 0.02	
= : 0.34	c : 0.16	] : 0.11	g : 0.06	d : 0.06	q : 0.06	r : 0.04	b : 0.02	e : 0.02	f : 0.02	a : 0.02	2 : 0.02	
= : 0.51	] : 0.11	g : 0.09	2 : 0.04	d : 0.04	r : 0.04	q : 0.04	e : 0.02	a : 0.02	f : 0.02	3 : 0.02	
= : 0.55	g : 0.13	2 : 0.06	e : 0.04	r : 0.04	] : 0.02	f : 0.02	a : 0.02	q : 0.02	3 : 0.02	i : 0.02	
= : 0.62	g : 0.13	3 : 0.04	c : 0.02	b : 0.02	] : 0.02	f : 0.02	i : 0.02	2 : 0.02	d : 0.02	e : 0.02	
= : 0.65	g : 0.13	c : 0.04	b : 0.04	f : 0.02	3 : 0.02	i : 0.02	d : 0.02	e : 0.02	
= : 0.65	g : 0.11	c : 0.06	4 : 0.02	] : 0.02	3 : 0.02	b : 0.02	i : 0.02	d : 0.02	e : 0.02	
= : 0.65	g : 0.13	] : 0.04	c : 0.04	i : 0.04	4 : 0.02	d : 0.02	e : 0.02	
= : 0.67	g : 0.11	3 : 0.04	i : 0.04	] : 0.04	c : 0.02	4 : 0.02	2 : 0.02	
= : 0.58	g : 0.09	] : 0.06	2 : 0.06	4 : 0.04	3 : 0.04	i : 0.04	e : 0.02	a : 0.02	
= : 0.65	2 : 0.04	3 : 0.04	4 : 0.04	i : 0.04	g : 0.04	d : 0.02	a : 0.02	] : 0.02	e : 0.02	c : 0.02	
= : 0.65	g : 0.06	c : 0.06	4 : 0.04	i : 0.04	e : 0.04	d : 0.02	] : 0.02	b : 0.02	
= : 0.62	c : 0.09	g : 0.06	4 : 0.04	e : 0.04	d : 0.02	b : 0.02	i : 0.02	2 : 0.02	] : 0.02	
= : 0.62	g : 0.09	c : 0.06	i : 0.04	e : 0.04	d : 0.02	] : 0.02	4 : 0.02	2 : 0.02	b : 0.02	
= : 0.53	] : 0.09	g : 0.06	4 : 0.06	b : 0.04	c : 0.04	i : 0.04	a : 0.02	2 : 0.02	d : 0.02	e : 0.02	
= : 0.41	b : 0.06	4 : 0.06	c : 0.06	] : 0.04	g : 0.04	i : 0.04	a : 0.04	d : 0.04	: : 0.04	2 : 0.02	B : 0.02	[ : 0.02	e : 0.02	
= : 0.37	c : 0.11	b : 0.06	4 : 0.06	a : 0.06	: : 0.06	] : 0.04	g : 0.04	d : 0.04	3 : 0.02	B : 0.02	2 : 0.02	i : 0.02	

#score	845.9206115830026
#seq	43
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_UTR_m3_run2.txt

#BEAR
a[dddd!!cccqqqqqqqqccc22dddd]	chr1:26232150-26232455(-)$1	305	127	156	16.4597
###dddd[cccqqqqqqqqccc]ddddff	chr6:31698003-31698255(-)$1	252	184	213	16.3991
DDeeeee[cccqqqqqqqqccc]eeeeef	chr11:868512-868810(-)$1	298	128	157	14.9096
[a$$$$$ddddqqqqqqqqdddd4444a]	chr19:42759090-42759332(-)$1	242	39	68	15.1499
!!iiiiiiiiiqqqqqqqqiiiiiiiii4	chr2:196522001-196522326(+)$1	325	238	267	17.2479
!ccc[ddddbbqqqqqqqqbb]dddd333	chr12:132402699-132403009(+)$1	310	204	233	16.8124
dd[eeeee[bbqqqqqqqqbb]eeeeedd	chr2:48011086-48011396(+)$1	310	17	46	16.8372
ff]ccceeeeeqqqqqqqqeeeee:dddd	chr19:1883117-1883358(-)$1	241	103	132	14.2117
ee[ccc[ddddqqqqqqqqdddd4444cc	chr19:54970354-54970651(+)$1	297	238	267	15.8142
fff:dddd[bbqqqqqqqqbb333dddd:	chr1:36789531-36789831(+)$1	300	72	101	14.6757
i!!ccc[ddddqqqqqqqqdddd]ccc22	chr1:228328717-228328944(+)$1	227	16	45	15.7079
eee"""eeeeeqqqqqqqqeeeee4444e	chr19:1883181-1883442(-)$1	261	29	58	16.3166
bb[a[eeeeeaqqqqqqqqa]eeeee]ab	chr4:103748166-103748452(-)$1	286	160	189	16.0602
ddd"""bb[bbqqqqqqqqbb]bb4444d	chr7:50860172-50860445(-)$1	273	217	246	16.0983
========[bbqqqqqqqqbb========	chr8:101963250-101963529(-)$1	279	226	255	18.0153
ffff[ffffffqqqqqqqqffffff]fff	chr16:1428933-1429158(-)$1	225	43	72	15.4941
d[bb[ccc[bbqqqqqqqqbb]ccc]bbd	chr16:89023918-89024178(-)$1	260	139	168	16.0595
eeeee"""cccqqqqqqqqccc]eeeeeE	chr6:53213228-53213507(-)$1	279	131	160	15.8650
ff[dddd[cccqqqqqqqqccc]ddddff	chr17:80676113-80676430(+)$1	317	192	221	16.1420
eeeee[eeeeeqqqqqqqqeeeee]eeee	chr19:1959159-1959418(+)$1	259	205	234	15.7638
a==========qqqqqqqq==========	chr1:27930015-27930288(-)$1	273	39	68	17.8283
$$$$$ffffffqqqqqqqqffffff333d	chr9:139722149-139722373(+)$1	224	8	37	15.7218
a[ffffff[bbqqqqqqqqbb]ffffff]	chr20:62566550-62566821(+)$1	271	121	150	16.7669
ddd[ccc[cccqqqqqqqqccc]cccddd	chr19:1104367-1104633(+)$1	266	14	43	16.7338
a[a!!ffffffqqqqqqqqffffff22a]	chr16:89006130-89006450(-)$1	320	20	49	16.5908
eeeee[bb[bbqqqqqqqqbb]bbeeeee	chr9:139249871-139250151(+)$1	280	168	197	15.6750
iiiigggggggqqqqqqqqgggggggccc	chr19:10464399-10464674(-)$1	275	110	139	16.8204
[==========qqqqqqqq==========	chrX:152938524-152938824(-)$1	300	136	165	17.8098
ibb!!ffffffqqqqqqqqffffff22bb	chr2:97533534-97533793(-)$1	259	180	209	15.2167
hhh[gggggggqqqqqqqqggggggg22h	chr2:97535518-97535833(-)$1	315	7	36	16.0949
##ffffff[bbqqqqqqqqbb]ffffff5	chr19:13262680-13262926(+)$1	246	105	134	15.8033
ggg[ccc!!bbqqqqqqqqbb4444ccc]	chr19:18554140-18554408(-)$1	268	178	207	17.3731
:eeeee!!cccqqqqqqqqccc22eeeee	chr22:19705625-19705867(+)$1	242	186	215	15.6879
ccc[bb!!cccqqqqqqqqccc]bb]ccc	chr5:180480729-180481009(+)$1	280	61	90	16.2353
a####ffffffqqqqqqqqffffffa]hh	chr9:139756705-139756967(-)$1	262	91	120	15.9467
dd[bb[eeeeeqqqqqqqqeeeee]bb]d	chr17:7476457-7476752(+)$1	295	189	218	14.8393
Beeeee[a[bbqqqqqqqqbba]eeeee:	chr1:228270928-228271282(+)$1	354	175	204	15.4266
b[ffffff[bbqqqqqqqqbb22ffffff	chr1:1689857-1690114(-)$1	257	14	43	16.0887
ffffgggggggqqqqqqqqggggggg22f	chr19:1883520-1883795(-)$1	275	173	202	16.2823
ccc!!ccc[bbrrrrrrrrrbb]ccc22c	chr16:577739-577987(+)$1	248	185	214	10.3729
ggggg"""cccqqqqqqqqccc333gggg	chr12:30907136-30907430(-)$1	294	138	167	17.0765
::dddd!!abbqqqqqqqqbb]a22dddd	chr9:139757168-139757420(-)$1	252	15	44	14.3148
dddd[bbddddqqqqqqqqdddd]bbddd	chr7:127670360-127670609(+)$1	249	63	92	14.0127
$$$dddd[cccqqqqqqqqccc]dddd66	chr19:41312888-41313167(+)$1	279	208	237	15.1912
cc[ccc[ddddqqqqqqqqdddd]ccc]c	chr19:1650374-1650612(-)$1	238	186	215	15.8083
fff[ddddcccqqqqqqqqccc]dddd22	chr19:1168734-1168981(-)$1	247	165	194	16.0982
::ffffff[bbqqqqqqqqbbffffffdd	chrX:152954940-152955191(+)$1	251	49	78	14.5081
#bb[eeeee[aqqqqqqqqa]eeeee]bb	chr19:40737884-40738136(-)$1	252	78	107	15.6427
##eeeee!!bbqqqqqqqqbb22eeeee]	chr6:15248990-15249268(+)$1	278	143	172	16.9970
b[a[gggggggqqqqqqqqggggggg]a]	chr20:62330650-62330905(-)$1	255	109	138	17.3354
eee"""eeeeeqqqqqqqqeeeeeeeeee	chr12:31477543-31477838(-)$1	295	92	121	16.0514
=ccc!!eeeeeqqqqqqqqeeeee22ccc	chr18:3450359-3450599(+)$1	240	103	132	15.8186
eeiiiiiiiiiqqqqqqqqiiiiiiiiiB	chr17:76116540-76116795(-)$1	255	124	153	15.9406
b[a[gggggggqqqqqqqqggggggg]a]	chr20:62330721-62330936(-)$1	215	140	169	17.3354
eee[gggggggqqqqqqqqgggggggeee	chr19:2425735-2425981(-)$1	246	161	190	16.7763
dd!!dddd!!aqqqqqqqqa22dddd22d	chr5:139030587-139030815(+)$1	228	70	99	15.4897

#otherMatches

#Seq PSSM
CGGCGGGAGGCGGUGGCGAGCUCACCGCG	chr1:26232150-26232455(-)$1	305	127	156	16.4597
AUGGGCGUGGCCCGAAGAAGCCCCGCCCC	chr6:31698003-31698255(-)$1	252	184	213	16.3991
CUCCUCCACAGGACGGGAGCUGGGGAGGG	chr11:868512-868810(-)$1	298	128	157	14.9096
gcggcggggaggggagaggcucugagagg	chr19:42759090-42759332(-)$1	242	39	68	15.1499
UGUGCGGUCUGGGCUGCUGCGGGCCGCGG	chr2:196522001-196522326(+)$1	325	238	267	17.2479
UUGGAGCAUUGGGAUAUAACAGGUGUAAA	chr12:132402699-132403009(+)$1	310	204	233	16.8124
GUGUGGGGUGCGAAAGGAGGUUCCUCGGC	chr2:48011086-48011396(+)$1	310	17	46	16.8372
ucuccaggagggagacucgccuccaucug	chr19:1883117-1883358(-)$1	241	103	132	14.2117
CCUCCACGUGAGGUCAUGGUCACAGCAUG	chr19:54970354-54970651(+)$1	297	238	267	15.8142
ugcugcucucugauccuaaagccugagcu	chr1:36789531-36789831(+)$1	300	72	101	14.6757
GUUUCGUCUUUGCAUGAAAGAGGUCGGUC	chr1:228328717-228328944(+)$1	227	16	45	15.7079
GAGAAUAUGUUGAAAAGCUGACAucaacc	chr19:1883181-1883442(-)$1	261	29	58	16.3166
UCAGGGGUGACACAGAAUAGCUCGCUGCG	chr4:103748166-103748452(-)$1	286	160	189	16.0602
AUUUCUGAUGCAACUCUUCGCCUUUGCUG	chr7:50860172-50860445(-)$1	273	217	246	16.0983
UUUUUUGCUCCUUGUGAACGGGCGGGGGA	chr8:101963250-101963529(-)$1	279	226	255	18.0153
UGUGUCACGGCAGAGCCGGGCUGUGUCGC	chr16:1428933-1429158(-)$1	225	43	72	15.4941
GUCUAUGGAgaaccuugucucaccacagc	chr16:89023918-89024178(-)$1	260	139	168	16.0595
CGCCCCACGCCGAGGCUGAGGCAGGGCGC	chr6:53213228-53213507(-)$1	279	131	160	15.8650
GGUGGUCUCUUCAGGUGAAAAGUGACCCC	chr17:80676113-80676430(+)$1	317	192	221	16.1420
GGUGUGAUGUCUUUUUCCUGACGUGGCAU	chr19:1959159-1959418(+)$1	259	205	234	15.7638
UUCCCUCCCAGGUUUGCUAUUGGGGGGGG	chr1:27930015-27930288(-)$1	273	39	68	17.8283
GGUGAGCAGUUCAGAAACAAGCUGUGGAA	chr9:139722149-139722373(+)$1	224	8	37	15.7218
GGACCUGCAGGAGGCUUUCCCAGCAGGUG	chr20:62566550-62566821(+)$1	271	121	150	16.7669
GUCGUGGUCGGGGAAGGGGCCGUCCAGGC	chr19:1104367-1104633(+)$1	266	14	43	16.7338
UGCGUUUCCUCUCCUGGACGAGGAACAGG	chr16:89006130-89006450(-)$1	320	20	49	16.5908
CCAGGGUCUCAGAAGUGUGUGUGGCCUGG	chr9:139249871-139250151(+)$1	280	168	197	15.6750
GGCUGCCUCCUUCCCAUCUGGGGGGUGCU	chr19:10464399-10464674(-)$1	275	110	139	16.8204
GUCCGUCUGGGGGUGUGGACCUGGACGGG	chrX:152938524-152938824(-)$1	300	136	165	17.8098
ACUGGGCUGUCUGGCUGCUGGCAGCAAGG	chr2:97533534-97533793(-)$1	259	180	209	15.2167
GGCCGCGCUGGAGAAAGAGCCGGCGCCCG	chr2:97535518-97535833(-)$1	315	7	36	16.0949
AAAGGGGGCGGGGGGCGCACCACCCCUUA	chr19:13262680-13262926(+)$1	246	105	134	15.8033
GAACAGAAAUGCAAAAAUACAGAUGUCUA	chr19:18554140-18554408(-)$1	268	178	207	17.3731
CGAGCCAUGGCCCGACCGCGCCUCGGCUC	chr22:19705625-19705867(+)$1	242	186	215	15.6879
GCGGUGACCAGGGUCUCUGCUGCCAGCGC	chr5:180480729-180481009(+)$1	280	61	90	16.2353
GGAAGAUGUUGAAGAGGGGCAGCGUUGGG	chr9:139756705-139756967(-)$1	262	91	120	15.9467
UCGUCGCGGCUAAAACACGGGUCGGGGAG	chr17:7476457-7476752(+)$1	295	189	218	14.8393
CGGGCAGGUGGACAGGAACCCCGUGCCCU	chr1:228270928-228271282(+)$1	354	175	204	15.4266
UAGGAAGCUCUUUUGACUUAGUUGCUUUU	chr1:1689857-1690114(-)$1	257	14	43	16.0887
gaaggaggugucaaggauaacaucuuugu	chr19:1883520-1883795(-)$1	275	173	202	16.2823
CCGGAGGCAGAAGUUGUGGAUcggccggc	chr16:577739-577987(+)$1	248	185	214	10.3729
GCUUGGAGGUCGAGAGACGGAUACGUAAG	chr12:30907136-30907430(-)$1	294	138	167	17.0765
GGGCCAUACCCAAUAACCAGGUGCUUGGC	chr9:139757168-139757420(-)$1	252	15	44	14.3148
GAUCAUCUGGAUGUUGUUCUCCAUGAGGU	chr7:127670360-127670609(+)$1	249	63	92	14.0127
AUCGAGCCACUCUUUGACCGGUUGCUCAU	chr19:41312888-41313167(+)$1	279	208	237	15.1912
CCAGGGCUCUGCUGGAACUCAGACCCCAG	chr19:1650374-1650612(-)$1	238	186	215	15.8083
CUCACUUGCUGGGGAGGGGCAGCCAGGGA	chr19:1168734-1168981(-)$1	247	165	194	16.0982
AACAGAGGUCCAGAGCAAAGGCCUUUGCC	chrX:152954940-152955191(+)$1	251	49	78	14.5081
GCUGGUGCUGUGGGGCUGAGGGGUAUGGG	chr19:40737884-40738136(-)$1	252	78	107	15.6427
gaagaggaggAAGAUGCGCUCGGCCUCUG	chr6:15248990-15249268(+)$1	278	143	172	16.9970
UGGGCUGCUCAGGGGCUGGUGGGCAGGUG	chr20:62330650-62330905(-)$1	255	109	138	17.3354
CCUGCUCCCGAGGGGAGGGUCGGGGGGCC	chr12:31477543-31477838(-)$1	295	92	121	16.0514
CUCGCGCUGGGAGGGGAGAUCCAGAAUGA	chr18:3450359-3450599(+)$1	240	103	132	15.8186
CCGGGAGGUUCUCAGGCCUGGACCUUUCC	chr17:76116540-76116795(-)$1	255	124	153	15.9406
UGGGCUGCUCAGGGGCUGGUGGGCAGGUG	chr20:62330721-62330936(-)$1	215	140	169	17.3354
gccgcauuuucacuaucuggaaaaugggC	chr19:2425735-2425981(-)$1	246	161	190	16.7763
CCCCCUACCCCUCAUCCUCGCAGUAGCUG	chr5:139030587-139030815(+)$1	228	70	99	15.4897

#DB
(.((((..(((........)))..)))).	chr1:26232150-26232455(-)$1	1	127	156	16.4597
...((((.(((........))).))))))	chr6:31698003-31698255(-)$1	1	184	213	16.3991
(((((((.(((........))).)))))(	chr11:868512-868810(-)$1	1	128	157	14.9096
.(.....((((........))))....).	chr19:42759090-42759332(-)$1	1	39	68	15.1499
..(((((((((........))))))))).	chr2:196522001-196522326(+)$1	1	238	267	17.2479
.(((.((((((........)).))))...	chr12:132402699-132403009(+)$1	1	204	233	16.8124
((.(((((.((........)).)))))))	chr2:48011086-48011396(+)$1	1	17	46	16.8372
)).)))(((((........))))).((((	chr19:1883117-1883358(-)$1	1	103	132	14.2117
((.(((.((((........))))....))	chr19:54970354-54970651(+)$1	1	238	267	15.8142
))).((((.((........))...)))).	chr1:36789531-36789831(+)$1	1	72	101	14.6757
(..(((.((((........)))).)))..	chr1:228328717-228328944(+)$1	1	16	45	15.7079
(((...(((((........)))))....)	chr19:1883181-1883442(-)$1	1	29	58	16.3166
((.(.((((((........).))))).))	chr4:103748166-103748452(-)$1	1	160	189	16.0602
(((...((.((........)).))....)	chr7:50860172-50860445(-)$1	1	217	246	16.0983
((((((((.((........))))))))))	chr8:101963250-101963529(-)$1	1	226	255	18.0153
((((.((((((........)))))).)))	chr16:1428933-1429158(-)$1	1	43	72	15.4941
(.((.(((.((........)).))).)))	chr16:89023918-89024178(-)$1	1	139	168	16.0595
(((((...(((........))).))))))	chr6:53213228-53213507(-)$1	1	131	160	15.8650
((.((((.(((........))).))))))	chr17:80676113-80676430(+)$1	1	192	221	16.1420
(((((.(((((........))))).))))	chr19:1959159-1959418(+)$1	1	205	234	15.7638
(((((((((((........))))))))))	chr1:27930015-27930288(-)$1	1	39	68	17.8283
.....((((((........))))))...)	chr9:139722149-139722373(+)$1	1	8	37	15.7218
(.((((((.((........)).)))))).	chr20:62566550-62566821(+)$1	1	121	150	16.7669
(((.(((.(((........))).))))))	chr19:1104367-1104633(+)$1	1	14	43	16.7338
(.(..((((((........))))))..).	chr16:89006130-89006450(-)$1	1	20	49	16.5908
(((((.((.((........)).)))))))	chr9:139249871-139250151(+)$1	1	168	197	15.6750
))))(((((((........)))))))(((	chr19:10464399-10464674(-)$1	1	110	139	16.8204
.((((((((((........))))))))))	chrX:152938524-152938824(-)$1	1	136	165	17.8098
(((..((((((........))))))..))	chr2:97533534-97533793(-)$1	1	180	209	15.2167
(((.(((((((........)))))))..)	chr2:97535518-97535833(-)$1	1	7	36	16.0949
..((((((.((........)).)))))).	chr19:13262680-13262926(+)$1	1	105	134	15.8033
(((.(((..((........))....))).	chr19:18554140-18554408(-)$1	1	178	207	17.3731
.(((((..(((........)))..)))))	chr22:19705625-19705867(+)$1	1	186	215	15.6879
(((.((..(((........))).)).)))	chr5:180480729-180481009(+)$1	1	61	90	16.2353
(....((((((........))))))).))	chr9:139756705-139756967(-)$1	1	91	120	15.9467
((.((.(((((........))))).)).)	chr17:7476457-7476752(+)$1	1	189	218	14.8393
((((((.(.((........))).))))).	chr1:228270928-228271282(+)$1	1	175	204	15.4266
(.((((((.((........))..))))))	chr1:1689857-1690114(-)$1	1	14	43	16.0887
(((((((((((........)))))))..)	chr19:1883520-1883795(-)$1	1	173	202	16.2823
(((..(((.((.........)).)))..)	chr16:577739-577987(+)$1	1	185	214	10.3729
(((((...(((........)))...))))	chr12:30907136-30907430(-)$1	1	138	167	17.0765
..((((..(((........)).)..))))	chr9:139757168-139757420(-)$1	1	15	44	14.3148
((((.((((((........)))).)))))	chr7:127670360-127670609(+)$1	1	63	92	14.0127
...((((.(((........))).))))..	chr19:41312888-41313167(+)$1	1	208	237	15.1912
((.(((.((((........)))).))).)	chr19:1650374-1650612(-)$1	1	186	215	15.8083
(((.(((((((........))).))))..	chr19:1168734-1168981(-)$1	1	165	194	16.0982
..((((((.((........))))))))((	chrX:152954940-152955191(+)$1	1	49	78	14.5081
.((.(((((.(........).))))).))	chr19:40737884-40738136(-)$1	1	78	107	15.6427
..(((((..((........))..))))).	chr6:15248990-15249268(+)$1	1	143	172	16.9970
(.(.(((((((........))))))).).	chr20:62330650-62330905(-)$1	1	109	138	17.3354
(((...(((((........))))))))))	chr12:31477543-31477838(-)$1	1	92	121	16.0514
((((..(((((........)))))..)))	chr18:3450359-3450599(+)$1	1	103	132	15.8186
))(((((((((........))))))))))	chr17:76116540-76116795(-)$1	1	124	153	15.9406
(.(.(((((((........))))))).).	chr20:62330721-62330936(-)$1	1	140	169	17.3354
(((.(((((((........))))))))))	chr19:2425735-2425981(-)$1	1	161	190	16.7763
((..((((..(........)..))))..)	chr5:139030587-139030815(+)$1	1	70	99	15.4897

#PSSM
e : 0.14	d : 0.12	f : 0.10	a : 0.08	# : 0.07	b : 0.07	i : 0.05	: : 0.05	c : 0.05	[ : 0.03	! : 0.03	= : 0.03	$ : 0.03	g : 0.03	D : 0.01	h : 0.01	B : 0.01	
e : 0.17	[ : 0.12	d : 0.10	f : 0.10	c : 0.08	# : 0.07	b : 0.05	= : 0.05	! : 0.03	$ : 0.03	g : 0.03	: : 0.03	D : 0.01	a : 0.01	i : 0.01	h : 0.01	
e : 0.17	f : 0.14	[ : 0.10	d : 0.08	c : 0.07	$ : 0.05	i : 0.05	= : 0.05	b : 0.05	a : 0.05	# : 0.03	! : 0.03	g : 0.03	] : 0.01	h : 0.01	
[ : 0.16	e : 0.14	d : 0.10	c : 0.10	f : 0.10	! : 0.07	i : 0.05	" : 0.05	= : 0.05	$ : 0.03	b : 0.03	: : 0.01	a : 0.01	# : 0.01	g : 0.01	
e : 0.16	d : 0.14	g : 0.12	c : 0.10	[ : 0.08	f : 0.07	! : 0.07	" : 0.05	= : 0.05	$ : 0.03	i : 0.03	b : 0.03	# : 0.01	
d : 0.16	f : 0.16	c : 0.14	e : 0.12	g : 0.10	" : 0.08	= : 0.05	[ : 0.05	i : 0.03	b : 0.03	$ : 0.01	! : 0.01	
e : 0.19	f : 0.16	d : 0.12	g : 0.10	! : 0.07	[ : 0.07	c : 0.07	b : 0.05	= : 0.05	i : 0.03	" : 0.03	$ : 0.01	
d : 0.16	e : 0.16	f : 0.16	! : 0.10	g : 0.10	[ : 0.08	= : 0.05	i : 0.03	b : 0.03	c : 0.03	" : 0.03	a : 0.01	
[ : 0.21	c : 0.19	e : 0.14	d : 0.10	g : 0.10	f : 0.08	! : 0.05	i : 0.03	= : 0.03	a : 0.01	
b : 0.28	c : 0.19	e : 0.12	g : 0.10	d : 0.08	f : 0.08	i : 0.03	= : 0.03	[ : 0.01	! : 0.01	
b : 0.28	c : 0.19	e : 0.10	g : 0.10	d : 0.08	f : 0.08	a : 0.05	i : 0.03	= : 0.03	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
b : 0.26	c : 0.19	e : 0.10	g : 0.10	d : 0.08	f : 0.08	a : 0.05	i : 0.03	= : 0.03	r : 0.01	
b : 0.28	c : 0.19	e : 0.10	g : 0.10	d : 0.08	f : 0.08	i : 0.03	] : 0.03	= : 0.03	2 : 0.01	
c : 0.19	] : 0.14	e : 0.14	f : 0.10	g : 0.10	d : 0.08	= : 0.05	2 : 0.05	i : 0.03	3 : 0.01	4 : 0.01	a : 0.01	b : 0.01	
] : 0.17	e : 0.16	f : 0.14	d : 0.12	g : 0.10	2 : 0.07	= : 0.05	i : 0.03	3 : 0.03	b : 0.03	c : 0.01	4 : 0.01	a : 0.01	
e : 0.23	f : 0.16	d : 0.10	g : 0.10	2 : 0.05	4 : 0.05	] : 0.05	b : 0.05	= : 0.05	c : 0.05	i : 0.03	3 : 0.03	
e : 0.17	f : 0.16	d : 0.14	g : 0.10	4 : 0.08	c : 0.08	= : 0.05	i : 0.03	] : 0.03	b : 0.03	2 : 0.03	: : 0.01	3 : 0.01	
e : 0.19	d : 0.17	g : 0.12	c : 0.08	4 : 0.07	f : 0.07	= : 0.05	] : 0.05	2 : 0.05	i : 0.03	b : 0.03	3 : 0.01	a : 0.01	
d : 0.17	e : 0.17	c : 0.10	2 : 0.10	] : 0.08	f : 0.08	4 : 0.07	= : 0.05	i : 0.03	3 : 0.03	b : 0.03	g : 0.01	
e : 0.16	d : 0.14	f : 0.10	2 : 0.10	a : 0.08	c : 0.08	= : 0.05	b : 0.05	i : 0.03	3 : 0.03	4 : 0.03	] : 0.03	h : 0.01	g : 0.01	6 : 0.01	
d : 0.19	] : 0.14	f : 0.10	c : 0.10	e : 0.10	b : 0.05	= : 0.05	: : 0.03	2 : 0.03	h : 0.03	4 : 0.01	3 : 0.01	E : 0.01	5 : 0.01	g : 0.01	6 : 0.01	B : 0.01	

#score	893.7542974164114
#seq	56
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_transcript_m2_run2.txt

#BEAR
dddxxxxxxxxxxxxxxxdddd]ee	chr4:79304792-79305071(+)$1	279	226	251	18.5301
gggddddtttttttttttdddd22g	chr18:189809-190147(+)$1	338	179	204	20.2879
eeeewwwwwwwwwwwwwweeeee33	chr3:111466644-111466909(+)$1	265	39	64	22.4427
fff!!attttttttttta22fffff	chr8:141895540-141895832(-)$1	292	119	144	20.7858
fffffxxxxxxxxxxxxxxxfffff	chr12:102125973-102126223(+)$1	250	38	63	18.5077
ii!!bbtttttttttttbb22iiii	chr12:441717-442031(-)$1	314	195	220	19.8616
dfffffftttttttttttffffff4	chr14:31197848-31198094(+)$1	246	91	116	20.0979
eeeewwwwwwwwwwwwwweeeee::	chr4:53938212-53938522(-)$1	310	236	261	20.6590
ggggggtttttttttttggggggg]	chr3:31670964-31671215(+)$1	251	214	239	20.6285
:eeeeettttttttttteeeee::e	chr8:81694679-81694955(-)$1	276	35	60	18.5791
iiiiivvvvvvvvvvvvviiiiiii	chr20:31015515-31015770(+)$1	255	228	253	21.2880
ddyyyyyyyyyyyyyyyydddd]ff	chr2:171911355-171911670(-)$1	315	250	275	21.6802
[eeeeeuuuuuuuuuuuueeeee22	chrX:30718063-30718318(+)$1	255	57	82	23.0803
eeeexxxxxxxxxxxxxxxeeeee:	chr1:174463645-174463930(+)$1	285	75	100	18.5009
gggggggtttttttttttggggggg	chr13:28830734-28831016(+)$1	282	70	95	20.4907
dd[cccwwwwwwwwwwwwwwccc22	chr4:184086065-184086315(+)$1	250	153	178	21.2695
b"""bbyyyyyyyyyyyyyyyybb3	chr1:183450039-183450302(+)$1	263	197	222	19.9622
cccxxxxxxxxxxxxxxxccc]fff	chr17:62512969-62513239(+)$1	270	100	125	18.9112
cc[cccuuuuuuuuuuuuccc]ccc	chr17:29537851-29538113(+)$1	262	94	119	23.3871
dddxxxxxxxxxxxxxxxdddd]cc	chr12:12669106-12669419(-)$1	313	52	77	18.8253
:eeeeeuuuuuuuuuuuueeeee::	chr7:76945205-76945452(-)$1	247	68	93	20.8759
eeeewwwwwwwwwwwwwweeeee]a	chr4:107117416-107117689(-)$1	273	165	190	22.1604
ffffffuuuuuuuuuuuuffffff6	chr17:58400630-58400942(-)$1	312	258	283	21.9758
#eeeeeuuuuuuuuuuuueeeee33	chr8:141797539-141797804(-)$1	265	57	82	23.5225
##dddduuuuuuuuuuuudddd333	chr11:70400518-70400789(-)$1	271	135	160	22.8809
%cccwwwwwwwwwwwwwwccc5555	chr1:87350804-87351064(-)$1	260	37	62	18.7003
ddddwwwwwwwwwwwwwwdddd:ee	chr2:223799448-223799719(+)$1	271	232	257	20.3536
$eeeeettttttttttteeeee666	chr6:128330709-128330980(-)$1	271	99	124	20.1400
fffffwwwwwwwwwwwwwwffffff	chr1:153786664-153786923(-)$1	259	96	121	21.1241
ddyyyyyyyyyyyyyyyydddd::c	chr1:45521669-45522029(-)$1	360	190	215	20.1832
ddyyyyyyyyyyyyyyyydddd999	chr10:77450999-77451308(+)$1	309	164	189	20.3580
fffff[attttttttttta]fffff	chr5:87512193-87512462(-)$1	269	189	214	20.8501
gggggguuuuuuuuuuuuggggggg	chr3:57651066-57651358(-)$1	292	72	97	22.7964
bb!!ccctttttttttttccc22bb	chr2:183837482-183837788(-)$1	306	250	275	20.2002
dd[cccuuuuuuuuuuuucccdddd	chr16:24747409-24747651(+)$1	242	57	82	22.7694
:cccwwwwwwwwwwwwwwccc::cc	chr19:17294435-17294731(+)$1	296	240	265	19.2206
eeeeevvvvvvvvvvvvveeeeeFF	chr3:113141442-113141735(-)$1	293	219	244	21.2647
d:ddddwwwwwwwwwwwwwwdddd:	chr14:76319512-76319828(+)$1	316	291	316	18.4693
fffffxxxxxxxxxxxxxxxfffff	chr16:75061607-75061859(+)$1	252	178	203	18.5077
ee[cccyyyyyyyyyyyyyyyyccc	chr17:1289330-1289617(-)$1	287	182	207	21.2183
c"""ccctttttttttttccc333c	chr15:64415858-64416129(+)$1	271	17	42	21.5054
ffffffvvvvvvvvvvvvvffffff	chr8:97937052-97937339(+)$1	287	4	29	20.5435
ddcccvvvvvvvvvvvvvccc22dd	chr18:19338836-19339175(+)$1	339	163	188	21.0563
ffffffuuuuuuuuuuuuffffff:	chr2:175951745-175952058(-)$1	313	104	129	21.4781
gggggguuuuuuuuuuuuggggggg	chr2:44187030-44187300(-)$1	270	194	219	22.7964
eeeewwwwwwwwwwwwwweeeee::	chr15:91511590-91511841(-)$1	251	84	109	20.6590
"""cccuuuuuuuuuuuuccc333f	chr10:5762248-5762465(+)$1	217	139	164	23.5374
ddyyyyyyyyyyyyyyyyddddccc	chr6:155603451-155603674(-)$1	223	38	63	21.7008
f"""bbtttttttttttbb333fff	chr6:45150971-45151227(-)$1	256	194	219	19.9893
hhhhhwwwwwwwwwwwwwwhhhhhh	chr16:24776859-24777117(+)$1	258	147	172	18.9608
:eeeeeuuuuuuuuuuuueeeee::	chr10:34926216-34926473(-)$1	257	4	29	20.8759
gggcccyyyyyyyyyyyyyyyyccc	chr1:16200841-16201147(+)$1	306	255	280	21.0963
ddddwwwwwwwwwwwwwwdddd444	chr2:190333482-190333838(+)$1	356	127	152	21.6912
ddyyyyyyyyyyyyyyyydddd:gg	chr14:105181622-105181971(+)$1	349	13	38	20.8539
eeeewwwwwwwwwwwwwweeeee::	chr8:74614181-74614459(-)$1	278	136	161	20.6590
"eeeeettttttttttteeeee444	chr1:94954186-94954449(+)$1	263	98	123	21.3449
:eeeeeuuuuuuuuuuuueeeee:f	chr1:44908967-44909199(+)$1	232	82	107	21.5378
"""cccuuuuuuuuuuuuccc333c	chr17:56471448-56471704(-)$1	256	152	177	23.5930
ffffffvvvvvvvvvvvvvffffff	chr15:25638317-25638601(-)$1	284	78	103	20.5435
a!!cccwwwwwwwwwwwwwwccc22	chr17:35561550-35561868(-)$1	318	26	51	21.3643
!!cccbbtttttttttttbb]ccc2	chr18:685522-685760(-)$1	238	198	223	20.2261
gggggguuuuuuuuuuuuggggggg	chr12:56717544-56717877(-)$1	333	170	195	22.7964
fffffxxxxxxxxxxxxxxxfffff	chr1:193016228-193016572(-)$1	344	79	104	18.5077
ee[bbyyyyyyyyyyyyyyyybb]e	chr1:227246245-227246544(-)$1	299	176	201	20.7939
cc[ccctttttttttttccc]ccc]	chrX:130947175-130947495(-)$1	320	176	201	21.4104
gggggguuuuuuuuuuuuggggggg	chr6:168303621-168303968(+)$1	347	257	282	22.7964
gggggvvvvvvvvvvvvvggggggg	chr13:41549324-41549610(-)$1	286	78	103	21.5749
eeyyyyyyyyyyyyyyyyeeeee:d	chr2:38535457-38535748(-)$1	291	153	178	21.1666
$$dddduuuuuuuuuuuuddddddd	chr16:50612963-50613186(+)$1	223	116	141	21.4585

#otherMatches

#Seq PSSM
GUAUUUUUACCUGAAUCUUACUAUG	chr4:79304792-79305071(+)$1	279	226	251	18.5301
agaucaauuuuaccaguuuugaacu	chr18:189809-190147(+)$1	338	179	204	20.2879
CUCAAAUGUUAUUUGGAGUGAGAAA	chr3:111466644-111466909(+)$1	265	39	64	22.4427
ccuuacuaacucugccugccagggc	chr8:141895540-141895832(-)$1	292	119	144	20.7858
uacuguUUCUCUGUCUauccuagua	chr12:102125973-102126223(+)$1	250	38	63	18.5077
UAAAGAUUUCUUAGCUUUUAAUACA	chr12:441717-442031(-)$1	314	195	220	19.8616
uguuaucuauauuuuccugaugacu	chr14:31197848-31198094(+)$1	246	91	116	20.0979
CUGGACUCAUAUCAUCCACCAGAGA	chr4:53938212-53938522(-)$1	310	236	261	20.6590
UUUGGAAAGUAUUGUUCUCCAAGAA	chr3:31670964-31671215(+)$1	251	214	239	20.6285
uucaggcucuuucuuacccuggucg	chr8:81694679-81694955(-)$1	276	35	60	18.5791
GUAUCUAACUUUCUUAAUGAUAUAU	chr20:31015515-31015770(+)$1	255	228	253	21.2880
GAAACACACAAUUUACUAUCAGCUU	chr2:171911355-171911670(-)$1	315	250	275	21.6802
GAAGAAUAUAUUAGUCAUUUCUUAA	chrX:30718063-30718318(+)$1	255	57	82	23.0803
AAGCUAAUUUAUUUUCUCUGUUUUC	chr1:174463645-174463930(+)$1	285	75	100	18.5009
UGAGAAGUCUAGUCUCUUCUUCUCA	chr13:28830734-28831016(+)$1	282	70	95	20.4907
UGUGCAUUUCACAUUCCAUUUGUUU	chr4:184086065-184086315(+)$1	250	153	178	21.2695
ACUUCCUUAAACUCAUUUAUCUGGU	chr1:183450039-183450302(+)$1	263	197	222	19.9622
UCAUAUUUUAAACUUUCCUGAGGGA	chr17:62512969-62513239(+)$1	270	100	125	18.9112
AUUUUACUAUUUGCAAACUAACAUC	chr17:29537851-29538113(+)$1	262	94	119	23.3871
UAUUGUAUUUUUAAAAAUGUAAAUG	chr12:12669106-12669419(-)$1	313	52	77	18.8253
AACUUUCAUUACCUCCUCAAAGUCU	chr7:76945205-76945452(-)$1	247	68	93	20.8759
GAAAUAAAAUUAGUGCUUUUUCAGU	chr4:107117416-107117689(-)$1	273	165	190	22.1604
uuauuccuuuuuauuguugaauaau	chr17:58400630-58400942(-)$1	312	258	283	21.9758
CAGCAGUGCCUUCAAAUCUUGUUCC	chr8:141797539-141797804(-)$1	265	57	82	23.5225
ggagagggaaucugggaacucugaa	chr11:70400518-70400789(-)$1	271	135	160	22.8809
GUUGGACCUUAAUUAUAACAAAGAU	chr1:87350804-87351064(-)$1	260	37	62	18.7003
GGCCUUGCUCAGUUUUCUGGCCACA	chr2:223799448-223799719(+)$1	271	232	257	20.3536
AUUAGGCAUUUAUUUAACCUAACCC	chr6:128330709-128330980(-)$1	271	99	124	20.1400
AUACUAAACCAUACUAUAGAGUAUU	chr1:153786664-153786923(-)$1	259	96	121	21.1241
uccccuccauucuuucuugagccca	chr1:45521669-45522029(-)$1	360	190	215	20.1832
UCCCUCUUUCCCUUUGCAGAAUCCU	chr10:77450999-77451308(+)$1	309	164	189	20.3580
AUAUUCCUGUUUAAUUCUGUAGUAU	chr5:87512193-87512462(-)$1	269	189	214	20.8501
GAGAUACUACCUGUGAAAUGUCUCU	chr3:57651066-57651358(-)$1	292	72	97	22.7964
auuuguuuuucugugccuggcuuau	chr2:183837482-183837788(-)$1	306	250	275	20.2002
ggcacaaaagcaaaacucugucuca	chr16:24747409-24747651(+)$1	242	57	82	22.7694
AGGUAAAAAAAAAAACACACCCCGC	chr19:17294435-17294731(+)$1	296	240	265	19.2206
GGUUUGAAGGAAAGAAAAAAACCGG	chr3:113141442-113141735(-)$1	293	219	244	21.2647
gaacuauguguuuuucuucuuggua	chr14:76319512-76319828(+)$1	316	291	316	18.4693
gaggacucuuccauacuuucuccuc	chr16:75061607-75061859(+)$1	252	178	203	18.5077
CUAUuucuuucacuuguuauccaaa	chr17:1289330-1289617(-)$1	287	182	207	21.2183
GCAAGCCUGCAUCCCCUUGGUAAUC	chr15:64415858-64416129(+)$1	271	17	42	21.5054
CAAAGUUUAAAUGCCAUCUACUUUG	chr8:97937052-97937339(+)$1	287	4	29	20.5435
uaacauuugaacacccuuuguagua	chr18:19338836-19339175(+)$1	339	163	188	21.0563
aucuucagaaugacccaggaagaua	chr2:175951745-175952058(-)$1	313	104	129	21.4781
uugaaccagaaguaagauguucaga	chr2:44187030-44187300(-)$1	270	194	219	22.7964
AGUAUCCUACUCUAUAUUUGCUAAC	chr15:91511590-91511841(-)$1	251	84	109	20.6590
CCAAGAUAUAUUUCUGACUCUAAUG	chr10:5762248-5762465(+)$1	217	139	164	23.5374
UAUUCUCAAUCAAAACUCUAAGAAU	chr6:155603451-155603674(-)$1	223	38	63	21.7008
aaccacuaacuuacuuugucucuau	chr6:45150971-45151227(-)$1	256	194	219	19.9893
CUAUGUAACAAAUAAGAUUUGUAGC	chr16:24776859-24777117(+)$1	258	147	172	18.9608
AGCAUUGUAGUGAAUUCAAAUGCAC	chr10:34926216-34926473(-)$1	257	4	29	20.8759
CAGUAAUCGUCCUAGAACUUUUUUG	chr1:16200841-16201147(+)$1	306	255	280	21.0963
UAAUACUUACUAAUCUACAUUAUCC	chr2:190333482-190333838(+)$1	356	127	152	21.6912
CUGAUGAUAAUAAAACAAAGAAACU	chr14:105181622-105181971(+)$1	349	13	38	20.8539
gcuaccuuucccaaucucuaguaac	chr8:74614181-74614459(-)$1	278	136	161	20.6590
CUAACAUUCUUCCUACUUGUUAACU	chr1:94954186-94954449(+)$1	263	98	123	21.3449
cauaguucauacucuccugcugucu	chr1:44908967-44909199(+)$1	232	82	107	21.5378
UAAUUGUGUUCUAAAAAUCAAACUG	chr17:56471448-56471704(-)$1	256	152	177	23.5930
AGUGAUAUAAUAUAAAUAAAUCACU	chr15:25638317-25638601(-)$1	284	78	103	20.5435
GCUCAUCACCACAAAAUUAAAUGUC	chr17:35561550-35561868(-)$1	318	26	51	21.3643
AACUUCAGCUGAGAUAAAUGUAAGG	chr18:685522-685760(-)$1	238	198	223	20.2261
UUUCCCUCAGAUAAAACUGGGAAGA	chr12:56717544-56717877(-)$1	333	170	195	22.7964
AUUACAGCAAUAUAAAUAUAGUGAU	chr1:193016228-193016572(-)$1	344	79	104	18.5077
UGUGCUACAAGAUUCUGACAUGCCC	chr1:227246245-227246544(-)$1	299	176	201	20.7939
ACCAGGAAAUAUGGCUACCUUGUGU	chrX:130947175-130947495(-)$1	320	176	201	21.4104
aaacagcaaccauuuuauuuguuua	chr6:168303621-168303968(+)$1	347	257	282	22.7964
UUUUCAAAAAAAAAAUCAGAGAAAC	chr13:41549324-41549610(-)$1	286	78	103	21.5749
gacucuaguaaccaucuuucuagua	chr2:38535457-38535748(-)$1	291	153	178	21.1666
CAUGCACUGUCUUACUCCUGCAGGC	chr16:50612963-50613186(+)$1	223	116	141	21.4585

#DB
(((...............)))).))	chr4:79304792-79305071(+)$1	1	226	251	18.5301
(((((((...........))))..)	chr18:189809-190147(+)$1	1	179	204	20.2879
((((..............)))))..	chr3:111466644-111466909(+)$1	1	39	64	22.4427
(((..(...........)..)))))	chr8:141895540-141895832(-)$1	1	119	144	20.7858
(((((...............)))))	chr12:102125973-102126223(+)$1	1	38	63	18.5077
((..((...........))..))))	chr12:441717-442031(-)$1	1	195	220	19.8616
(((((((...........)))))).	chr14:31197848-31198094(+)$1	1	91	116	20.0979
((((..............)))))..	chr4:53938212-53938522(-)$1	1	236	261	20.6590
((((((...........))))))).	chr3:31670964-31671215(+)$1	1	214	239	20.6285
.(((((...........)))))..(	chr8:81694679-81694955(-)$1	1	35	60	18.5791
(((((.............)))))))	chr20:31015515-31015770(+)$1	1	228	253	21.2880
((................)))).))	chr2:171911355-171911670(-)$1	1	250	275	21.6802
.(((((............)))))..	chrX:30718063-30718318(+)$1	1	57	82	23.0803
((((...............))))).	chr1:174463645-174463930(+)$1	1	75	100	18.5009
(((((((...........)))))))	chr13:28830734-28831016(+)$1	1	70	95	20.4907
((.(((..............)))..	chr4:184086065-184086315(+)$1	1	153	178	21.2695
(...((................)).	chr1:183450039-183450302(+)$1	1	197	222	19.9622
(((...............))).)))	chr17:62512969-62513239(+)$1	1	100	125	18.9112
((.(((............))).)))	chr17:29537851-29538113(+)$1	1	94	119	23.3871
(((...............)))).))	chr12:12669106-12669419(-)$1	1	52	77	18.8253
.(((((............)))))..	chr7:76945205-76945452(-)$1	1	68	93	20.8759
((((..............))))).)	chr4:107117416-107117689(-)$1	1	165	190	22.1604
((((((............)))))).	chr17:58400630-58400942(-)$1	1	258	283	21.9758
.(((((............)))))..	chr8:141797539-141797804(-)$1	1	57	82	23.5225
..((((............))))...	chr11:70400518-70400789(-)$1	1	135	160	22.8809
.(((..............)))....	chr1:87350804-87351064(-)$1	1	37	62	18.7003
((((..............)))).((	chr2:223799448-223799719(+)$1	1	232	257	20.3536
.(((((...........)))))...	chr6:128330709-128330980(-)$1	1	99	124	20.1400
(((((..............))))))	chr1:153786664-153786923(-)$1	1	96	121	21.1241
((................))))..(	chr1:45521669-45522029(-)$1	1	190	215	20.1832
((................))))...	chr10:77450999-77451308(+)$1	1	164	189	20.3580
(((((.(...........).)))))	chr5:87512193-87512462(-)$1	1	189	214	20.8501
((((((............)))))))	chr3:57651066-57651358(-)$1	1	72	97	22.7964
((..(((...........)))..))	chr2:183837482-183837788(-)$1	1	250	275	20.2002
((.(((............)))))))	chr16:24747409-24747651(+)$1	1	57	82	22.7694
.(((..............)))..((	chr19:17294435-17294731(+)$1	1	240	265	19.2206
(((((.............)))))))	chr3:113141442-113141735(-)$1	1	219	244	21.2647
).((((..............)))).	chr14:76319512-76319828(+)$1	1	291	316	18.4693
(((((...............)))))	chr16:75061607-75061859(+)$1	1	178	203	18.5077
((.(((................)))	chr17:1289330-1289617(-)$1	1	182	207	21.2183
(...(((...........)))...)	chr15:64415858-64416129(+)$1	1	17	42	21.5054
((((((.............))))))	chr8:97937052-97937339(+)$1	1	4	29	20.5435
(((((.............)))..))	chr18:19338836-19339175(+)$1	1	163	188	21.0563
((((((............)))))).	chr2:175951745-175952058(-)$1	1	104	129	21.4781
((((((............)))))))	chr2:44187030-44187300(-)$1	1	194	219	22.7964
((((..............)))))..	chr15:91511590-91511841(-)$1	1	84	109	20.6590
...(((............)))...)	chr10:5762248-5762465(+)$1	1	139	164	23.5374
((................)))))))	chr6:155603451-155603674(-)$1	1	38	63	21.7008
(...((...........))...)))	chr6:45150971-45151227(-)$1	1	194	219	19.9893
(((((..............))))))	chr16:24776859-24777117(+)$1	1	147	172	18.9608
.(((((............)))))..	chr10:34926216-34926473(-)$1	1	4	29	20.8759
((((((................)))	chr1:16200841-16201147(+)$1	1	255	280	21.0963
((((..............))))...	chr2:190333482-190333838(+)$1	1	127	152	21.6912
((................)))).((	chr14:105181622-105181971(+)$1	1	13	38	20.8539
((((..............)))))..	chr8:74614181-74614459(-)$1	1	136	161	20.6590
.(((((...........)))))...	chr1:94954186-94954449(+)$1	1	98	123	21.3449
.(((((............))))).(	chr1:44908967-44909199(+)$1	1	82	107	21.5378
...(((............)))...)	chr17:56471448-56471704(-)$1	1	152	177	23.5930
((((((.............))))))	chr15:25638317-25638601(-)$1	1	78	103	20.5435
(..(((..............)))..	chr17:35561550-35561868(-)$1	1	26	51	21.3643
..(((((...........)).))).	chr18:685522-685760(-)$1	1	198	223	20.2261
((((((............)))))))	chr12:56717544-56717877(-)$1	1	170	195	22.7964
(((((...............)))))	chr1:193016228-193016572(-)$1	1	79	104	18.5077
((.((................)).)	chr1:227246245-227246544(-)$1	1	176	201	20.7939
((.(((...........))).))).	chrX:130947175-130947495(-)$1	1	176	201	21.4104
((((((............)))))))	chr6:168303621-168303968(+)$1	1	257	282	22.7964
(((((.............)))))))	chr13:41549324-41549610(-)$1	1	78	103	21.5749
((................))))).(	chr2:38535457-38535748(-)$1	1	153	178	21.1666
..((((............)))))))	chr16:50612963-50613186(+)$1	1	116	141	21.4585

#PSSM
d : 0.20	f : 0.15	e : 0.14	g : 0.13	: : 0.07	c : 0.05	" : 0.04	i : 0.02	b : 0.02	# : 0.02	$ : 0.02	[ : 0.01	% : 0.01	h : 0.01	a : 0.01	! : 0.01	
e : 0.26	d : 0.17	f : 0.15	g : 0.13	" : 0.07	c : 0.07	i : 0.02	! : 0.02	# : 0.01	b : 0.01	: : 0.01	h : 0.01	$ : 0.01	
e : 0.21	f : 0.15	g : 0.13	d : 0.10	y : 0.08	[ : 0.08	" : 0.07	c : 0.07	! : 0.04	i : 0.01	h : 0.01	
e : 0.21	c : 0.18	f : 0.14	g : 0.10	d : 0.08	y : 0.08	x : 0.04	! : 0.04	" : 0.04	i : 0.01	h : 0.01	b : 0.01	
c : 0.18	f : 0.14	w : 0.13	e : 0.13	g : 0.10	y : 0.08	x : 0.05	d : 0.05	b : 0.05	! : 0.01	i : 0.01	h : 0.01	
w : 0.15	c : 0.15	e : 0.11	x : 0.10	y : 0.10	g : 0.08	f : 0.07	d : 0.05	b : 0.05	v : 0.05	a : 0.01	[ : 0.01	
u : 0.24	w : 0.20	y : 0.14	t : 0.11	x : 0.10	v : 0.08	c : 0.02	d : 0.01	f : 0.01	g : 0.01	a : 0.01	b : 0.01	
u : 0.24	t : 0.21	w : 0.20	y : 0.14	x : 0.10	v : 0.08	
u : 0.24	t : 0.21	w : 0.20	y : 0.14	x : 0.10	v : 0.08	
u : 0.24	t : 0.21	w : 0.20	y : 0.14	x : 0.10	v : 0.08	
u : 0.24	t : 0.21	w : 0.20	y : 0.14	x : 0.10	v : 0.08	
u : 0.24	t : 0.21	w : 0.20	y : 0.14	x : 0.10	v : 0.08	
u : 0.24	t : 0.21	w : 0.20	y : 0.14	x : 0.10	v : 0.08	
u : 0.24	t : 0.21	w : 0.20	y : 0.14	x : 0.10	v : 0.08	
u : 0.24	t : 0.21	w : 0.20	y : 0.14	x : 0.10	v : 0.08	
u : 0.24	t : 0.21	w : 0.20	y : 0.14	x : 0.10	v : 0.08	
u : 0.24	t : 0.21	w : 0.20	y : 0.14	x : 0.10	v : 0.08	
u : 0.24	w : 0.20	y : 0.14	x : 0.10	t : 0.10	v : 0.08	e : 0.04	b : 0.02	a : 0.01	g : 0.01	c : 0.01	
e : 0.21	d : 0.17	c : 0.15	g : 0.10	w : 0.07	x : 0.05	y : 0.05	b : 0.04	f : 0.04	v : 0.02	2 : 0.01	i : 0.01	a : 0.01	
e : 0.23	d : 0.17	c : 0.15	g : 0.10	f : 0.08	y : 0.05	x : 0.04	w : 0.04	2 : 0.02	i : 0.01	] : 0.01	3 : 0.01	h : 0.01	b : 0.01	
e : 0.23	d : 0.18	c : 0.17	f : 0.15	g : 0.10	y : 0.05	] : 0.02	2 : 0.01	i : 0.01	3 : 0.01	h : 0.01	
e : 0.23	d : 0.20	f : 0.15	g : 0.10	c : 0.05	3 : 0.05	y : 0.04	i : 0.02	] : 0.02	2 : 0.02	5 : 0.01	: : 0.01	h : 0.01	b : 0.01	
e : 0.18	f : 0.18	c : 0.11	g : 0.10	: : 0.07	3 : 0.05	] : 0.04	2 : 0.04	d : 0.04	i : 0.02	b : 0.02	4 : 0.02	5 : 0.01	6 : 0.01	9 : 0.01	h : 0.01	
f : 0.20	: : 0.13	g : 0.11	c : 0.11	3 : 0.08	2 : 0.05	d : 0.05	e : 0.04	i : 0.02	b : 0.02	] : 0.02	4 : 0.02	5 : 0.01	6 : 0.01	9 : 0.01	F : 0.01	h : 0.01	
f : 0.18	c : 0.13	g : 0.11	: : 0.11	e : 0.05	3 : 0.05	2 : 0.05	d : 0.05	4 : 0.04	i : 0.02	] : 0.02	6 : 0.02	a : 0.01	5 : 0.01	9 : 0.01	b : 0.01	F : 0.01	h : 0.01	

#score	1441.8682329811086
#seq	69
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_UTR_m3_run1.txt

#BEAR
========oooooo======	chr15:40707522-40707782(+)$1	260	15	35	7.5733
ccceeeeennnnneeeee]c	chr14:50247368-50247594(+)$1	226	135	155	11.5412
[ccc[cccnnnnncccccc]	chr7:4793986-4794378(+)$1	392	359	379	12.2384
!!bb[cccnnnnnccc]bb2	chr19:10202845-10203104(+)$1	259	156	176	11.3149
dd[eeeeennnnneeeee44	chr8:144696656-144696921(-)$1	265	216	236	11.5193
dddd[cccnnnnnccc]ddd	chr5:138941606-138941857(+)$1	251	29	49	12.0833
eeee!!bbnnnnnbb22eee	chr17:4858718-4858963(+)$1	245	108	128	9.8723
!cccddddnnnnndddd]cc	chr2:86315663-86315895(-)$1	232	181	201	10.8286
gg####bbnnnnnbb4444g	chr11:47188300-47188537(-)$1	237	69	89	10.3376
bb[eeeeennnnneeeeebb	chr14:65478934-65479201(+)$1	267	169	189	10.4817
eeee[cccnnnnnccc]eee	chr12:121785504-121785741(-)$1	237	81	101	11.9105
""ffffffnnnnnfffffff	chr12:93894850-93895163(+)$1	313	274	294	10.3437
!!ccc[bbnnnnnbbccc22	chr12:9094875-9095232(-)$1	357	9	29	10.5281
==========lll=======	chr9:117031425-117031663(+)$1	238	147	167	7.5621
cc[eeeeennnnneeeee]c	chr8:25042205-25042477(+)$1	272	27	47	11.6566
dd[eeeeennnnneeeee]d	chr5:134681551-134681820(-)$1	269	164	184	11.5813
dddd[cccnnnnnccc]ddd	chr22:21328447-21328686(+)$1	239	170	190	12.0833
c!!eeeeennnnneeeee]c	chr17:4792892-4793158(+)$1	266	14	34	11.7445
dd[eeeeennnnneeeee22	chr22:29140522-29140798(+)$1	276	21	41	11.2231
dddd[cccnnnnncccdddd	chr3:52312094-52312354(-)$1	260	60	80	11.8195
:gggggggnnnnnggggggg	chr17:79976798-79977046(-)$1	248	154	174	11.0724
Eddddcccnnnnnccc]ddd	chr19:54933277-54933538(+)$1	261	34	54	10.9211
dddd[cccnnnnncccdddd	chr6:20546476-20546746(+)$1	270	138	158	11.8195
iiiiiiiinnnnniiiiiii	chr14:70237089-70237348(+)$1	259	71	91	11.7493
dddd[cccnnnnnccc]ddd	chr22:38043221-38043456(+)$1	235	72	92	12.0833
:gggggggnnnnnggggggg	chr2:201722479-201722708(-)$1	229	196	216	11.0724
Jgggggggnnnnnggggggg	chr11:85721971-85722218(-)$1	247	33	53	10.6244
dd[eeeeennnnneeeee]d	chr19:50365731-50365965(-)$1	234	136	156	11.5813
:gggggggnnnnnggggggg	chr19:35500228-35500440(+)$1	212	89	109	11.0724
dddd[cccnnnnnccc333d	chr3:49139553-49139791(-)$1	238	174	194	12.2851
!!bb[cccnnnnnccc]bb9	chr15:74932723-74933012(-)$1	289	56	76	10.8237
""ffffffnnnnnffffff3	chr22:47158526-47158844(+)$1	318	171	191	10.5354
dgggggggnnnnnggggggg	chr1:1238545-1238757(-)$1	212	90	110	11.7853
b[ccccccnnnnnccc]ccc	chr5:118872102-118872346(+)$1	244	51	71	11.9086
d!!eeeeennnnneeeeedd	chr17:7126862-7127064(+)$1	202	98	118	11.5567
eee[ddddnnnnndddd]ee	chr17:7123844-7124082(+)$1	238	137	157	10.1357
ccc!!cccnnnnnccccccE	chr9:117037840-117038074(+)$1	234	120	140	11.2386
ddd####annnnna4444dd	chr20:34302005-34302208(-)$1	203	141	161	10.6186
[ccc[cccnnnnnccc]ccc	chr17:25919284-25919547(+)$1	263	15	35	12.4986
gg[a[cccnnnnnccca]gg	chr19:17449234-17449514(+)$1	280	42	62	12.2091
ccc[ddddnnnnnddddccc	chr14:21544852-21545099(+)$1	247	148	168	10.7437
ccc[ddddnnnnndddd22c	chr17:42818660-42818919(+)$1	259	79	99	10.4201
Gccc[cccnnnnncccccc:	chr11:62398495-62398754(-)$1	259	62	82	10.7931
gggggg[annnnna]ggggg	chr17:40266409-40266619(-)$1	210	61	81	11.4159
d[ffffffnnnnnffffff]	chr11:116657127-116657374(-)$1	247	222	242	10.4162
!dddd[bbnnnnnbb]dddd	chr1:236714125-236714386(-)$1	261	192	212	10.1337
[bb!!cccnnnnnccc333b	chr17:27445297-27445539(-)$1	242	109	129	11.6751
###eeeeennnnneeeeedd	chr6:43741976-43742230(+)$1	254	139	159	11.3759
###eeeeennnnneeeee44	chr2:219677633-219677901(+)$1	268	209	229	11.4629
:gggggggnnnnnggggggg	chr7:100478882-100479122(+)$1	240	84	104	11.0724
:gggggggnnnnnggggggg	chr2:135705199-135705544(+)$1	345	165	185	11.0724
==========lll=======	chr5:647827-648136(+)$1	309	41	61	7.5621

#otherMatches

#Seq PSSM
UUGCCACCACACCCGGUGGU	chr15:40707522-40707782(+)$1	260	15	35	7.5733
GCAAUUCAUAUACUGAAUAU	chr14:50247368-50247594(+)$1	226	135	155	11.5412
UGCUCGAGGUGGUCUCAGCC	chr7:4793986-4794378(+)$1	392	359	379	12.2384
CCAGACACGGUCUGUGGCUA	chr19:10202845-10203104(+)$1	259	156	176	11.3149
CCAGCCUCAGUAAGAGGCCA	chr8:144696656-144696921(-)$1	265	216	236	11.5193
UCCAGGCCCGCAUGGUGUGG	chr5:138941606-138941857(+)$1	251	29	49	12.0833
GAUGAUCCCGCACGGCACAU	chr17:4858718-4858963(+)$1	245	108	128	9.8723
UGGCCAGAAGGACUCUGAGC	chr2:86315663-86315895(-)$1	232	181	201	10.8286
GAGUCCGAGAUAUUCCACAU	chr11:47188300-47188537(-)$1	237	69	89	10.3376
UGAGGUAAACACAUUACCCA	chr14:65478934-65479201(+)$1	267	169	189	10.4817
CUUUACAAGUUAAUUGAAGA	chr12:121785504-121785741(-)$1	237	81	101	11.9105
UGUACUUUUAUAUAAAGUAA	chr12:93894850-93895163(+)$1	313	274	294	10.3437
AGCUGACAAUAAAUGCAGAG	chr12:9094875-9095232(-)$1	357	9	29	10.5281
GGGUAAGUUGAAGCAAUUUA	chr9:117031425-117031663(+)$1	238	147	167	7.5621
UGAccgcgggcggcgcgggc	chr8:25042205-25042477(+)$1	272	27	47	11.6566
UGAGGUGGGAAAGCCACCGU	chr5:134681551-134681820(-)$1	269	164	184	11.5813
GAGGAGCCGGGAGGGCAUCU	chr22:21328447-21328686(+)$1	239	170	190	12.0833
GUAUGGUUCUUAAGACCACC	chr17:4792892-4793158(+)$1	266	14	34	11.7445
aaaacaaaaaaaCUUUGUGA	chr22:29140522-29140798(+)$1	276	21	41	11.2231
UUUCAGCCCCAACGGCGAGA	chr3:52312094-52312354(-)$1	260	60	80	11.8195
GAGUGUCCAGUGGGGACACU	chr17:79976798-79977046(-)$1	248	154	174	11.0724
CGGGCUCCCCCCAGGAUGUC	chr19:54933277-54933538(+)$1	261	34	54	10.9211
GACAUCGAAGAUAUCGUGUC	chr6:20546476-20546746(+)$1	270	138	158	11.8195
UAACACAAUUAUCUUGUGUU	chr14:70237089-70237348(+)$1	259	71	91	11.7493
CGGGAGCUGCCAGAGCCUCU	chr22:38043221-38043456(+)$1	235	72	92	12.0833
AAAAUGGUUUUCUACCAUUU	chr2:201722479-201722708(-)$1	229	196	216	11.0724
UGUCAGAAAAAUAUUUUGAU	chr11:85721971-85722218(-)$1	247	33	53	10.6244
GGAAGAAGAAAGACUUCUCC	chr19:50365731-50365965(-)$1	234	136	156	11.5813
UCUUUGCAGAAGAUGCAGAG	chr19:35500228-35500440(+)$1	212	89	109	11.0724
GUCACAGCAUUCAGCUCCCU	chr3:49139553-49139791(-)$1	238	174	194	12.2851
UGGCCUGGUUGUCCCAAGUA	chr15:74932723-74933012(-)$1	289	56	76	10.8237
GGCCAGGAAGCAAUUCUGGA	chr22:47158526-47158844(+)$1	318	171	191	10.5354
CCACAGCUGGUGAAGCUGUG	chr1:1238545-1238757(-)$1	212	90	110	11.7853
AAGGCCCUGCAAAAGGUGCU	chr5:118872102-118872346(+)$1	244	51	71	11.9086
AGUCCAUGGCUUACAUGGUG	chr17:7126862-7127064(+)$1	202	98	118	11.5567
CCCAUACCCGUCCGGUAAGG	chr17:7123844-7124082(+)$1	238	137	157	10.1357
GCCUGAUGGAGAACAUGGCG	chr9:117037840-117038074(+)$1	234	120	140	11.2386
AUUGUAGUGGAAAAGAAAGG	chr20:34302005-34302208(-)$1	203	141	161	10.6186
CCUGAGUGAAUGCUACACAG	chr17:25919284-25919547(+)$1	263	15	35	12.4986
GGUGAGAUGCUUGGUCCUCC	chr19:17449234-17449514(+)$1	280	42	62	12.2091
AGGAGGUCACAGGGACCCCU	chr14:21544852-21545099(+)$1	247	148	168	10.7437
UCCUGAAAUUUCUUUUCUUG	chr17:42818660-42818919(+)$1	259	79	99	10.4201
CAGGAGGUGUCUGACCCCUU	chr11:62398495-62398754(-)$1	259	62	82	10.7931
GCUUCAAGGAGGGCGUGAGG	chr17:40266409-40266619(-)$1	210	61	81	11.4159
UCUCUGACUAAGUGUUGGAA	chr11:116657127-116657374(-)$1	247	222	242	10.4162
UGUGGUGUUUCAUACUCUAC	chr1:236714125-236714386(-)$1	261	192	212	10.1337
GAGAACAAUGUGUUUGGGAU	chr17:27445297-27445539(-)$1	242	109	129	11.6751
GAAUCAUCACGAAGGUGAGU	chr6:43741976-43742230(+)$1	254	139	159	11.3759
CCAGGGGCCCCCAGCUCCCA	chr2:219677633-219677901(+)$1	268	209	229	11.4629
CGGCGAGAGCGCUUCUCGCC	chr7:100478882-100479122(+)$1	240	84	104	11.0724
UUCAUUUGGCUUGCAAAUGG	chr2:135705199-135705544(+)$1	345	165	185	11.0724
AUUAAUGAGUUUUACUCAUU	chr5:647827-648136(+)$1	309	41	61	7.5621

#DB
((((((((......))))))	chr15:40707522-40707782(+)$1	1	15	35	7.5733
((((((((.....))))).)	chr14:50247368-50247594(+)$1	1	135	155	11.5412
.(((.(((.....)))))).	chr7:4793986-4794378(+)$1	1	359	379	12.2384
..((.(((.....))).)).	chr19:10202845-10203104(+)$1	1	156	176	11.3149
((.(((((.....)))))..	chr8:144696656-144696921(-)$1	1	216	236	11.5193
((((.(((.....))).)))	chr5:138941606-138941857(+)$1	1	29	49	12.0833
((((..((.....))..)))	chr17:4858718-4858963(+)$1	1	108	128	9.8723
.(((((((.....)))).))	chr2:86315663-86315895(-)$1	1	181	201	10.8286
((....((.....))....)	chr11:47188300-47188537(-)$1	1	69	89	10.3376
((.(((((.....)))))))	chr14:65478934-65479201(+)$1	1	169	189	10.4817
((((.(((.....))).)))	chr12:121785504-121785741(-)$1	1	81	101	11.9105
..((((((.....)))))))	chr12:93894850-93895163(+)$1	1	274	294	10.3437
..(((.((.....)))))..	chr12:9094875-9095232(-)$1	1	9	29	10.5281
((((((((((...)))))))	chr9:117031425-117031663(+)$1	1	147	167	7.5621
((.(((((.....))))).)	chr8:25042205-25042477(+)$1	1	27	47	11.6566
((.(((((.....))))).)	chr5:134681551-134681820(-)$1	1	164	184	11.5813
((((.(((.....))).)))	chr22:21328447-21328686(+)$1	1	170	190	12.0833
(..(((((.....))))).)	chr17:4792892-4793158(+)$1	1	14	34	11.7445
((.(((((.....)))))..	chr22:29140522-29140798(+)$1	1	21	41	11.2231
((((.(((.....)))))))	chr3:52312094-52312354(-)$1	1	60	80	11.8195
.(((((((.....)))))))	chr17:79976798-79977046(-)$1	1	154	174	11.0724
((((((((.....))).)))	chr19:54933277-54933538(+)$1	1	34	54	10.9211
((((.(((.....)))))))	chr6:20546476-20546746(+)$1	1	138	158	11.8195
((((((((.....)))))))	chr14:70237089-70237348(+)$1	1	71	91	11.7493
((((.(((.....))).)))	chr22:38043221-38043456(+)$1	1	72	92	12.0833
.(((((((.....)))))))	chr2:201722479-201722708(-)$1	1	196	216	11.0724
((((((((.....)))))))	chr11:85721971-85722218(-)$1	1	33	53	10.6244
((.(((((.....))))).)	chr19:50365731-50365965(-)$1	1	136	156	11.5813
.(((((((.....)))))))	chr19:35500228-35500440(+)$1	1	89	109	11.0724
((((.(((.....)))...)	chr3:49139553-49139791(-)$1	1	174	194	12.2851
..((.(((.....))).)).	chr15:74932723-74933012(-)$1	1	56	76	10.8237
..((((((.....)))))).	chr22:47158526-47158844(+)$1	1	171	191	10.5354
)(((((((.....)))))))	chr1:1238545-1238757(-)$1	1	90	110	11.7853
(.((((((.....))).)))	chr5:118872102-118872346(+)$1	1	51	71	11.9086
(..(((((.....)))))))	chr17:7126862-7127064(+)$1	1	98	118	11.5567
(((.((((.....)))).))	chr17:7123844-7124082(+)$1	1	137	157	10.1357
(((..(((.....)))))))	chr9:117037840-117038074(+)$1	1	120	140	11.2386
(((....(.....)....))	chr20:34302005-34302208(-)$1	1	141	161	10.6186
.(((.(((.....))).)))	chr17:25919284-25919547(+)$1	1	15	35	12.4986
((.(.(((.....)))).))	chr19:17449234-17449514(+)$1	1	42	62	12.2091
(((.((((.....)))))))	chr14:21544852-21545099(+)$1	1	148	168	10.7437
(((.((((.....))))..)	chr17:42818660-42818919(+)$1	1	79	99	10.4201
((((.(((.....)))))).	chr11:62398495-62398754(-)$1	1	62	82	10.7931
((((((.(.....).)))))	chr17:40266409-40266619(-)$1	1	61	81	11.4159
(.((((((.....)))))).	chr11:116657127-116657374(-)$1	1	222	242	10.4162
.((((.((.....)).))))	chr1:236714125-236714386(-)$1	1	192	212	10.1337
.((..(((.....)))...)	chr17:27445297-27445539(-)$1	1	109	129	11.6751
...(((((.....)))))))	chr6:43741976-43742230(+)$1	1	139	159	11.3759
...(((((.....)))))..	chr2:219677633-219677901(+)$1	1	209	229	11.4629
.(((((((.....)))))))	chr7:100478882-100479122(+)$1	1	84	104	11.0724
.(((((((.....)))))))	chr2:135705199-135705544(+)$1	1	165	185	11.0724
((((((((((...)))))))	chr5:647827-648136(+)$1	1	41	61	7.5621

#PSSM
d : 0.26	c : 0.11	! : 0.09	: : 0.09	= : 0.05	[ : 0.05	e : 0.05	g : 0.05	b : 0.03	" : 0.03	# : 0.03	E : 0.01	i : 0.01	J : 0.01	G : 0.01	
d : 0.24	g : 0.19	c : 0.17	! : 0.09	= : 0.05	e : 0.05	b : 0.03	" : 0.03	[ : 0.03	# : 0.03	i : 0.01	
c : 0.19	d : 0.17	g : 0.15	[ : 0.13	= : 0.05	b : 0.05	e : 0.05	# : 0.05	f : 0.05	! : 0.03	i : 0.01	
e : 0.24	d : 0.15	g : 0.15	c : 0.11	= : 0.05	f : 0.05	[ : 0.05	b : 0.03	# : 0.03	! : 0.03	i : 0.01	a : 0.01	
[ : 0.24	e : 0.21	g : 0.15	d : 0.11	= : 0.05	! : 0.05	f : 0.05	# : 0.03	c : 0.03	i : 0.01	
c : 0.32	e : 0.21	g : 0.15	d : 0.07	= : 0.05	f : 0.05	# : 0.03	[ : 0.03	! : 0.01	i : 0.01	
c : 0.32	e : 0.21	g : 0.13	b : 0.07	d : 0.07	= : 0.05	f : 0.05	i : 0.01	# : 0.01	[ : 0.01	
c : 0.32	e : 0.21	g : 0.13	b : 0.07	d : 0.07	= : 0.05	f : 0.05	a : 0.03	i : 0.01	
n : 0.94	= : 0.03	o : 0.01	
n : 0.94	= : 0.03	o : 0.01	
n : 0.94	l : 0.03	o : 0.01	
n : 0.94	l : 0.03	o : 0.01	
n : 0.94	l : 0.03	o : 0.01	
c : 0.32	e : 0.21	g : 0.13	b : 0.07	d : 0.07	f : 0.05	= : 0.03	a : 0.03	o : 0.01	i : 0.01	
c : 0.32	e : 0.21	g : 0.13	b : 0.07	d : 0.07	= : 0.05	f : 0.05	i : 0.01	4 : 0.01	] : 0.01	
c : 0.34	e : 0.21	g : 0.15	d : 0.07	= : 0.05	f : 0.05	4 : 0.03	2 : 0.01	i : 0.01	] : 0.01	
e : 0.21	] : 0.17	g : 0.15	d : 0.13	c : 0.07	= : 0.05	f : 0.05	4 : 0.03	3 : 0.03	2 : 0.01	i : 0.01	a : 0.01	
e : 0.24	g : 0.15	c : 0.13	d : 0.13	= : 0.05	] : 0.05	f : 0.05	b : 0.03	4 : 0.03	3 : 0.03	i : 0.01	2 : 0.01	
d : 0.19	g : 0.17	c : 0.13	] : 0.09	= : 0.05	b : 0.05	4 : 0.05	e : 0.05	f : 0.05	2 : 0.05	3 : 0.03	i : 0.01	
d : 0.24	g : 0.19	c : 0.15	= : 0.05	2 : 0.05	e : 0.05	] : 0.03	4 : 0.03	b : 0.03	f : 0.01	i : 0.01	9 : 0.01	3 : 0.01	E : 0.01	: : 0.01	

#score	573.9807414010526
#seq	52
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_CDS_m1_run2.txt

#BEAR
eeeeeffffffssssssssssffffff	chr11:2154308-2154513(-)$1	205	87	114	18.6596
!ggggggg[attttttttttta]gggg	chr2:167142742-167143014(-)$1	272	128	155	22.6761
==========ttttttttttt======	chr5:138700149-138700427(+)$1	278	20	47	22.3703
::ffffffvvvvvvvvvvvvvffffff	chr4:151849951-151850318(-)$1	367	235	262	18.9030
========yyyyyyyyyyyyyyyy===	chr17:45734181-45734445(+)$1	264	13	40	18.5407
a!!eeeeevvvvvvvvvvvvveeeee2	chr12:6879027-6879260(+)$1	233	192	219	19.5842
eeeeeffffffssssssssssffffff	chr11:2154324-2154531(-)$1	207	105	132	18.6596
eee::eeeeettttttttttteeeee:	chr8:117862756-117863030(-)$1	274	109	136	18.5152
eeeeeffffffssssssssssffffff	chr11:2154304-2154508(-)$1	204	82	109	18.6596
======!!cccssssssssssccc22=	chr14:56083178-56083431(+)$1	253	37	64	17.7625
!eeeeeddddssssssssssdddd]ee	chr15:25616579-25616912(-)$1	333	271	298	16.3586
hhhhhhhwwwwwwwwwwwwwwhhhhhh	chr21:47612379-47612592(-)$1	213	161	188	17.1897
ff!!fffffftttttttttttffffff	chr16:81737370-81737683(+)$1	313	15	42	22.9377
dddd"""cccuuuuuuuuuuuuccc44	chr2:99980751-99980967(+)$1	216	97	124	20.6484
ffffff[ccctttttttttttcccfff	chr11:2154235-2154438(-)$1	203	124	151	23.1638
bbffffffvvvvvvvvvvvvvffffff	chr21:47612908-47613146(-)$1	238	36	63	20.3200
)))ddddwwwwwwwwwwwwwwdddd33	chr9:136905069-136905429(-)$1	360	169	196	16.8050
eeeeeffffffssssssssssffffff	chr11:2154332-2154541(-)$1	209	115	142	18.6596
==========uuuuuuuuuuuu=====	chr18:47016787-47017023(-)$1	236	66	93	21.8041
eebbeeeeevvvvvvvvvvvvveeeee	chr17:57741103-57741350(+)$1	247	35	62	19.1448
ffffff[ccctttttttttttcccfff	chr11:2154257-2154466(-)$1	209	152	179	23.1638
eeeeeffffffssssssssssffffff	chr11:2154297-2154500(-)$1	203	74	101	18.6596
d[cccyyyyyyyyyyyyyyyyccc]dd	chrX:53616530-53616800(-)$1	270	33	60	17.5456
eeeeeffffffssssssssssffffff	chr11:2154341-2154547(-)$1	206	121	148	18.6596
===[fffffftttttttttttffffff	chr14:54416725-54417045(-)$1	320	210	237	23.0585
gggggggwwwwwwwwwwwwwwgggggg	chr17:80218790-80219032(-)$1	242	50	77	20.3407
ffffff[cccsssssssssscccffff	chr13:20207953-20208202(+)$1	249	106	133	18.4875
hhhhhhhwwwwwwwwwwwwwwhhhhhh	chr21:47612346-47612567(-)$1	221	136	163	17.1897
eehhhhhhhhuuuuuuuuuuuuhhhhh	chr22:24313656-24313883(-)$1	227	45	72	18.9007
bb!!aeeeeettttttttttteeeee]	chr4:1018983-1019234(+)$1	251	124	151	21.2979
iii!!eeeeettttttttttteeeee7	chr22:50297581-50297870(-)$1	289	175	202	21.1663
eeeee!!ddddssssssssssdddd22	chr3:37368401-37368688(+)$1	287	88	115	16.2533
####ffffffssssssssssffffff4	chr17:60108824-60109107(-)$1	283	159	186	17.4013
ffffff[ccctttttttttttcccfff	chr11:2154246-2154457(-)$1	211	143	170	23.1638
qeeeeedddduuuuuuuuuuuudddd:	chr6:7580568-7580853(+)$1	285	217	244	18.6696
eeeeeffffffssssssssssffffff	chr11:2154289-2154493(-)$1	204	67	94	18.6596
eeeffffffuuuuuuuuuuuuffffff	chr20:35236183-35236448(+)$1	265	45	72	22.6768
ccc!!ffffffssssssssssffffff	chr17:38297363-38297605(+)$1	242	150	177	18.3815
eeeeeffffffssssssssssffffff	chr11:2154300-2154504(-)$1	204	78	105	18.6596
ffffff[ccctttttttttttcccfff	chr11:2154136-2154340(-)$1	204	26	53	23.1638
[ffffffwwwwwwwwwwwwwwffffff	chr2:232326575-232326829(-)$1	254	208	235	20.4988
eeeeeffffffssssssssssffffff	chr11:2154313-2154524(-)$1	211	98	125	18.6596
ffffbb[cccvvvvvvvvvvvvvccc]	chr17:78302062-78302369(+)$1	307	137	164	19.3356
ggggggyyyyyyyyyyyyyyyyggggg	chr12:6710749-6711032(-)$1	283	98	125	19.0004
ffffff!!avvvvvvvvvvvvva22ff	chr17:38317904-38318150(+)$1	246	175	202	19.7091
:eeeee[ccctttttttttttccc]ee	chr9:19376247-19376477(-)$1	230	51	78	22.0116
deeeee[cccwwwwwwwwwwwwwwccc	chr6:7572133-7572370(+)$1	237	83	110	19.4740
ffffff[ccctttttttttttcccfff	chr11:2154267-2154471(-)$1	204	157	184	23.1638
ca[gggggggssssssssssggggggg	chr9:712037-712319(+)$1	282	249	276	17.5136
iiiiiiiiiuuuuuuuuuuuuiiiiii	chr6:144782343-144782577(+)$1	234	151	178	21.8315
ccc::eeeeettttttttttteeeee:	chr19:10488710-10488999(-)$1	289	159	186	18.2658
hhhh!!ddddtttttttttttddddhh	chr1:171510097-171510374(+)$1	277	51	78	19.5719
:::bbeeeeettttttttttteeeee]	chr12:112638377-112638692(-)$1	315	255	282	18.2743
ggggggg[auuuuuuuuuuuua]gggg	chr6:71236263-71236655(+)$1	392	258	285	22.2855
[bb####cccssssssssssccc4444	chr11:34098008-34098276(+)$1	268	142	169	16.2899
{BBgggggggtttttttttttgggggg	chr6:26055947-26056206(-)$1	259	35	62	19.5414
[eeeee[ccctttttttttttccc]ee	chr9:19376209-19376444(-)$1	235	18	45	22.9662
ffffff[ccctttttttttttcccfff	chr11:2154191-2154400(-)$1	209	86	113	23.1638
eeeeeffffffssssssssssffffff	chr11:2154293-2154497(-)$1	204	71	98	18.6596
dddd[eeeeettttttttttteeeee]	chr14:56085851-56086120(+)$1	269	18	45	21.1682
cc[gggggggssssssssssggggggg	chr12:122189884-122190147(+)$1	263	5	32	17.5466
GGggggggguuuuuuuuuuuugggggg	chr12:54676516-54676759(+)$1	243	150	177	21.3570
gg!!gggggggssssssssssgggggg	chr7:91622185-91622470(+)$1	285	13	40	18.0107
:::ccc[ccctttttttttttccc]cc	chr11:35684889-35685222(+)$1	333	63	90	19.6411

#otherMatches

#Seq PSSM
AAGUUCUUCCAAUAUGACACCUGGAAG	chr11:2154308-2154513(-)$1	205	87	114	18.6596
AUAGGCGAGCACAUGAAAAGAGGUUGU	chr2:167142742-167143014(-)$1	272	128	155	22.6761
AAUGGUUUAGUUCAAGAUAUUUUAAGC	chr5:138700149-138700427(+)$1	278	20	47	22.3703
UCUGAAGAAAAGCAUACGGAAUCUUCA	chr4:151849951-151850318(-)$1	367	235	262	18.9030
UUUGUAUCUUUUGUCUUUUUUUUUGGU	chr17:45734181-45734445(+)$1	264	13	40	18.5407
GAGUCAGGGUGGGUUUGAAGACCUGAA	chr12:6879027-6879260(+)$1	233	192	219	19.5842
AAGUUCUUCCAAUAUGACACCUGGAAG	chr11:2154324-2154531(-)$1	207	105	132	18.6596
UAGAACUUCUGCCAgaaaaagagaagg	chr8:117862756-117863030(-)$1	274	109	136	18.5152
AAGUUCUUCCAAUAUGACACCUGGAAG	chr11:2154304-2154508(-)$1	204	82	109	18.6596
UUGUUUGUGUUUAAUAAAGAUGACCAG	chr14:56083178-56083431(+)$1	253	37	64	17.7625
AUGAUGUGUCUGUGGAUAUUGAUGCCA	chr15:25616579-25616912(-)$1	333	271	298	16.3586
ACAGAUGCACCCGCAACAUCCCGUCUG	chr21:47612379-47612592(-)$1	213	161	188	17.1897
CACCGAGCUGUGCCCCCAUCUCAGCUC	chr16:81737370-81737683(+)$1	313	15	42	22.9377
GAGCCGAAGCUACUCUUAAACUGCUAC	chr2:99980751-99980967(+)$1	216	97	124	20.6484
UCAGGGAGGCCAAACGUCACCGUCCCC	chr11:2154235-2154438(-)$1	203	124	151	23.1638
ucugugccacacacagacauagguaca	chr21:47612908-47613146(-)$1	238	36	63	20.3200
gaaggccgaggaagagaagaaggCCAA	chr9:136905069-136905429(-)$1	360	169	196	16.8050
AAGUUCUUCCAAUAUGACACCUGGAAG	chr11:2154332-2154541(-)$1	209	115	142	18.6596
AAGGAAAAUGACUCAUCAUCUCCAUUU	chr18:47016787-47017023(-)$1	236	66	93	21.8041
UGUCAACUGCUCAUUUCUAAAACAGUU	chr17:57741103-57741350(+)$1	247	35	62	19.1448
UCAGGGAGGCCAAACGUCACCGUCCCC	chr11:2154257-2154466(-)$1	209	152	179	23.1638
AAGUUCUUCCAAUAUGACACCUGGAAG	chr11:2154297-2154500(-)$1	203	74	101	18.6596
UGCCGGAAGGAGGAAGAGGAACGGAAA	chrX:53616530-53616800(-)$1	270	33	60	17.5456
AAGUUCUUCCAAUAUGACACCUGGAAG	chr11:2154341-2154547(-)$1	206	121	148	18.6596
UCUCCAUGCUGUACCUGGAUGAGUAUG	chr14:54416725-54417045(-)$1	320	210	237	23.0585
GUUACUUACAGCUAACAAAAGGGGUGA	chr17:80218790-80219032(-)$1	242	50	77	20.3407
GUGUUCGAGGUGGAGAAGAUCCUGGAC	chr13:20207953-20208202(+)$1	249	106	133	18.4875
ACAGAUGCACCCGCAACAUCCCGUCUG	chr21:47612346-47612567(-)$1	221	136	163	17.1897
GAUAUCUUUUUCUCUGUCUCCUGAAGG	chr22:24313656-24313883(-)$1	227	45	72	18.9007
CCACCAGCACAUCCACUAUCAGUGCUA	chr4:1018983-1019234(+)$1	251	124	151	21.2979
GUGCAGCCGGGGACAGGCAUGCUGGCA	chr22:50297581-50297870(-)$1	289	175	202	21.1663
ACAUUAAUUGUACCCAGAUCAGCAAAA	chr3:37368401-37368688(+)$1	287	88	115	16.2533
ACAUUCCUACUCCUAGCCCUGUGGGAU	chr17:60108824-60109107(-)$1	283	159	186	17.4013
UCAGGGAGGCCAAACGUCACCGUCCCC	chr11:2154246-2154457(-)$1	211	143	170	23.1638
ACUCAGAUGCGAACAGAGGAGAGCGUA	chr6:7580568-7580853(+)$1	285	217	244	18.6696
AAGUUCUUCCAAUAUGACACCUGGAAG	chr11:2154289-2154493(-)$1	204	67	94	18.6596
UUGGGUAUCUUAUAUUUUCAUGGUAUC	chr20:35236183-35236448(+)$1	265	45	72	22.6768
GACAAGAGUUUUUUUUAACAUAAACUC	chr17:38297363-38297605(+)$1	242	150	177	18.3815
AAGUUCUUCCAAUAUGACACCUGGAAG	chr11:2154300-2154504(-)$1	204	78	105	18.6596
UCAGGGAGGCCAAACGUCACCGUCCCC	chr11:2154136-2154340(-)$1	204	26	53	23.1638
AGCUGUCACUCCAGGCAAAAAGGCAGC	chr2:232326575-232326829(-)$1	254	208	235	20.4988
AAGUUCUUCCAAUAUGACACCUGGAAG	chr11:2154313-2154524(-)$1	211	98	125	18.6596
UGUUACUUCUAAAGAAAGAGAAAAGAU	chr17:78302062-78302369(+)$1	307	137	164	19.3356
AGGAGCCUAAAUCAUCUGCUCAGCUCC	chr12:6710749-6711032(-)$1	283	98	125	19.0004
UUCUUCAACAAAAGAAGAGAAGGGAGA	chr17:38317904-38318150(+)$1	246	175	202	19.7091
CCAGAAAGGCCUUAACUGUUUGCUGUU	chr9:19376247-19376477(-)$1	230	51	78	22.0116
CGAGGGCAGGAUGACUCUCAAAAACCU	chr6:7572133-7572370(+)$1	237	83	110	19.4740
UCAGGGAGGCCAAACGUCACCGUCCCC	chr11:2154267-2154471(-)$1	204	157	184	23.1638
CCAGCCGCUUGUUUUCAGUAAGGUGGU	chr9:712037-712319(+)$1	282	249	276	17.5136
AUGUUAGAACUCUAGCGCUUCUUCUAA	chr6:144782343-144782577(+)$1	234	151	178	21.8315
GCAGCUGGGCCccauccauccgucuau	chr19:10488710-10488999(-)$1	289	159	186	18.2658
UUUCCAGAUCAAGGAUACAGAGGUCGA	chr1:171510097-171510374(+)$1	277	51	78	19.5719
AAUUGGGCCCUUCUUUCUACUGGGUCA	chr12:112638377-112638692(-)$1	315	255	282	18.2743
AUAGAUAGUGCUAAAGGAUUGAGUGUC	chr6:71236263-71236655(+)$1	392	258	285	22.2855
UGCUGGAAGGGAAGGAAAAACCUGUAU	chr11:34098008-34098276(+)$1	268	142	169	16.2899
CGCGGCCACUGUAACCAAGAAAGUGGC	chr6:26055947-26056206(-)$1	259	35	62	19.5414
CCAGAAAGGCCUUAACUGUUUGCUGUU	chr9:19376209-19376444(-)$1	235	18	45	22.9662
UCAGGGAGGCCAAACGUCACCGUCCCC	chr11:2154191-2154400(-)$1	209	86	113	23.1638
AAGUUCUUCCAAUAUGACACCUGGAAG	chr11:2154293-2154497(-)$1	204	71	98	18.6596
UCUUUGUUUGUUUGUUUUUUUCAAAUU	chr14:56085851-56086120(+)$1	269	18	45	21.1682
GGUCUUUCCUUUAGUGGAAUGGGAAGG	chr12:122189884-122190147(+)$1	263	5	32	17.5466
UUUAGGAAUAAGUAGAGAAAAAUUCCU	chr12:54676516-54676759(+)$1	243	150	177	21.3570
GAAGAAGAAUUUGGUGUUGAUGAUUCU	chr7:91622185-91622470(+)$1	285	13	40	18.0107
gagugagucggaggaagagagcgaguc	chr11:35684889-35685222(+)$1	333	63	90	19.6411

#DB
)))))((((((..........))))))	chr11:2154308-2154513(-)$1	1	87	114	18.6596
.(((((((.(...........).))))	chr2:167142742-167143014(-)$1	1	128	155	22.6761
((((((((((...........))))))	chr5:138700149-138700427(+)$1	1	20	47	22.3703
..((((((.............))))))	chr4:151849951-151850318(-)$1	1	235	262	18.9030
((((((((................)))	chr17:45734181-45734445(+)$1	1	13	40	18.5407
(..(((((.............))))).	chr12:6879027-6879260(+)$1	1	192	219	19.5842
)))))((((((..........))))))	chr11:2154324-2154531(-)$1	1	105	132	18.6596
)))..(((((...........))))).	chr8:117862756-117863030(-)$1	1	109	136	18.5152
)))))((((((..........))))))	chr11:2154304-2154508(-)$1	1	82	109	18.6596
((((((..(((..........)))..)	chr14:56083178-56083431(+)$1	1	37	64	17.7625
.(((((((((..........)))).))	chr15:25616579-25616912(-)$1	1	271	298	16.3586
(((((((..............))))))	chr21:47612379-47612592(-)$1	1	161	188	17.1897
((..((((((...........))))))	chr16:81737370-81737683(+)$1	1	15	42	22.9377
((((...(((............)))..	chr2:99980751-99980967(+)$1	1	97	124	20.6484
((((((.(((...........))))))	chr11:2154235-2154438(-)$1	1	124	151	23.1638
((((((((.............))))))	chr21:47612908-47613146(-)$1	1	36	63	20.3200
...((((..............))))..	chr9:136905069-136905429(-)$1	1	169	196	16.8050
)))))((((((..........))))))	chr11:2154332-2154541(-)$1	1	115	142	18.6596
((((((((((............)))))	chr18:47016787-47017023(-)$1	1	66	93	21.8041
(((((((((.............)))))	chr17:57741103-57741350(+)$1	1	35	62	19.1448
((((((.(((...........))))))	chr11:2154257-2154466(-)$1	1	152	179	23.1638
)))))((((((..........))))))	chr11:2154297-2154500(-)$1	1	74	101	18.6596
(.(((................))).))	chrX:53616530-53616800(-)$1	1	33	60	17.5456
)))))((((((..........))))))	chr11:2154341-2154547(-)$1	1	121	148	18.6596
(((.((((((...........))))))	chr14:54416725-54417045(-)$1	1	210	237	23.0585
(((((((..............))))))	chr17:80218790-80219032(-)$1	1	50	77	20.3407
((((((.(((..........)))))))	chr13:20207953-20208202(+)$1	1	106	133	18.4875
(((((((..............))))))	chr21:47612346-47612567(-)$1	1	136	163	17.1897
((((((((((............)))))	chr22:24313656-24313883(-)$1	1	45	72	18.9007
((..((((((...........))))).	chr4:1018983-1019234(+)$1	1	124	151	21.2979
(((..(((((...........))))).	chr22:50297581-50297870(-)$1	1	175	202	21.1663
(((((..((((..........))))..	chr3:37368401-37368688(+)$1	1	88	115	16.2533
....((((((..........)))))).	chr17:60108824-60109107(-)$1	1	159	186	17.4013
((((((.(((...........))))))	chr11:2154246-2154457(-)$1	1	143	170	23.1638
.)))))((((............)))).	chr6:7580568-7580853(+)$1	1	217	244	18.6696
)))))((((((..........))))))	chr11:2154289-2154493(-)$1	1	67	94	18.6596
)))((((((............))))))	chr20:35236183-35236448(+)$1	1	45	72	22.6768
(((..((((((..........))))))	chr17:38297363-38297605(+)$1	1	150	177	18.3815
)))))((((((..........))))))	chr11:2154300-2154504(-)$1	1	78	105	18.6596
((((((.(((...........))))))	chr11:2154136-2154340(-)$1	1	26	53	23.1638
.((((((..............))))))	chr2:232326575-232326829(-)$1	1	208	235	20.4988
)))))((((((..........))))))	chr11:2154313-2154524(-)$1	1	98	125	18.6596
((((((.(((.............))).	chr17:78302062-78302369(+)$1	1	137	164	19.3356
((((((................)))))	chr12:6710749-6711032(-)$1	1	98	125	19.0004
((((((..(.............)..))	chr17:38317904-38318150(+)$1	1	175	202	19.7091
.(((((.(((...........))).))	chr9:19376247-19376477(-)$1	1	51	78	22.0116
)(((((.(((..............)))	chr6:7572133-7572370(+)$1	1	83	110	19.4740
((((((.(((...........))))))	chr11:2154267-2154471(-)$1	1	157	184	23.1638
((.(((((((..........)))))))	chr9:712037-712319(+)$1	1	249	276	17.5136
(((((((((............))))))	chr6:144782343-144782577(+)$1	1	151	178	21.8315
)))..(((((...........))))).	chr19:10488710-10488999(-)$1	1	159	186	18.2658
((((..((((...........))))))	chr1:171510097-171510374(+)$1	1	51	78	19.5719
...(((((((...........))))).	chr12:112638377-112638692(-)$1	1	255	282	18.2743
(((((((.(............).))))	chr6:71236263-71236655(+)$1	1	258	285	22.2855
.((....(((..........)))....	chr11:34098008-34098276(+)$1	1	142	169	16.2899
.(((((((((...........))))))	chr6:26055947-26056206(-)$1	1	35	62	19.5414
.(((((.(((...........))).))	chr9:19376209-19376444(-)$1	1	18	45	22.9662
((((((.(((...........))))))	chr11:2154191-2154400(-)$1	1	86	113	23.1638
)))))((((((..........))))))	chr11:2154293-2154497(-)$1	1	71	98	18.6596
((((.(((((...........))))).	chr14:56085851-56086120(+)$1	1	18	45	21.1682
((.(((((((..........)))))))	chr12:122189884-122190147(+)$1	1	5	32	17.5466
(((((((((............))))))	chr12:54676516-54676759(+)$1	1	150	177	21.3570
((..(((((((..........))))))	chr7:91622185-91622470(+)$1	1	13	40	18.0107
...(((.(((...........))).))	chr11:35684889-35685222(+)$1	1	63	90	19.6411

#PSSM
e : 0.23	f : 0.15	= : 0.07	: : 0.06	d : 0.06	g : 0.06	c : 0.06	h : 0.04	[ : 0.04	! : 0.03	b : 0.03	i : 0.03	a : 0.01	) : 0.01	# : 0.01	q : 0.01	{ : 0.01	G : 0.01	
e : 0.31	f : 0.17	g : 0.07	= : 0.07	: : 0.04	h : 0.04	b : 0.04	c : 0.04	d : 0.03	i : 0.03	! : 0.01	) : 0.01	[ : 0.01	# : 0.01	a : 0.01	B : 0.01	G : 0.01	
e : 0.28	f : 0.18	g : 0.07	= : 0.07	! : 0.06	h : 0.06	c : 0.04	d : 0.03	b : 0.03	i : 0.03	[ : 0.03	: : 0.03	) : 0.01	# : 0.01	B : 0.01	
e : 0.26	f : 0.20	g : 0.12	! : 0.07	= : 0.06	h : 0.06	d : 0.04	: : 0.03	b : 0.03	c : 0.03	# : 0.03	[ : 0.01	i : 0.01	
e : 0.28	f : 0.23	g : 0.14	= : 0.06	h : 0.04	! : 0.04	: : 0.03	c : 0.03	b : 0.03	" : 0.01	d : 0.01	a : 0.01	i : 0.01	# : 0.01	[ : 0.01	
f : 0.40	e : 0.20	g : 0.14	= : 0.06	h : 0.04	! : 0.03	" : 0.01	d : 0.01	y : 0.01	b : 0.01	i : 0.01	# : 0.01	c : 0.01	
f : 0.28	[ : 0.18	g : 0.12	e : 0.12	d : 0.06	= : 0.04	! : 0.04	h : 0.04	y : 0.03	" : 0.01	i : 0.01	# : 0.01	
f : 0.26	c : 0.21	e : 0.12	g : 0.09	w : 0.07	d : 0.06	= : 0.04	! : 0.03	y : 0.03	h : 0.01	i : 0.01	[ : 0.01	
f : 0.23	c : 0.23	e : 0.10	w : 0.07	g : 0.07	d : 0.06	v : 0.04	y : 0.04	= : 0.03	a : 0.03	[ : 0.01	h : 0.01	i : 0.01	
c : 0.23	f : 0.21	e : 0.09	v : 0.07	w : 0.07	d : 0.06	u : 0.06	g : 0.06	y : 0.04	= : 0.03	a : 0.01	h : 0.01	
t : 0.32	f : 0.17	u : 0.12	v : 0.09	s : 0.09	w : 0.09	y : 0.04	c : 0.01	d : 0.01	g : 0.01	
t : 0.32	s : 0.31	u : 0.12	v : 0.09	w : 0.09	y : 0.04	
t : 0.32	s : 0.31	u : 0.12	v : 0.09	w : 0.09	y : 0.04	
t : 0.32	s : 0.31	u : 0.12	v : 0.09	w : 0.09	y : 0.04	
t : 0.32	s : 0.31	u : 0.12	v : 0.09	w : 0.09	y : 0.04	
t : 0.32	s : 0.31	u : 0.12	v : 0.09	w : 0.09	y : 0.04	
t : 0.32	s : 0.31	u : 0.12	v : 0.09	w : 0.09	y : 0.04	
t : 0.32	s : 0.31	u : 0.12	v : 0.09	w : 0.09	y : 0.04	
t : 0.32	s : 0.31	u : 0.12	v : 0.09	w : 0.09	y : 0.04	
t : 0.32	s : 0.31	u : 0.12	v : 0.09	w : 0.09	y : 0.04	
t : 0.32	s : 0.21	u : 0.12	v : 0.09	w : 0.09	y : 0.04	c : 0.03	g : 0.03	d : 0.01	f : 0.01	
f : 0.28	c : 0.20	e : 0.10	g : 0.09	d : 0.06	u : 0.06	v : 0.04	a : 0.03	y : 0.03	h : 0.03	= : 0.01	w : 0.01	i : 0.01	
f : 0.28	c : 0.21	e : 0.12	g : 0.10	d : 0.07	h : 0.04	] : 0.03	= : 0.03	y : 0.01	v : 0.01	a : 0.01	w : 0.01	i : 0.01	
f : 0.29	c : 0.20	g : 0.14	e : 0.12	d : 0.07	h : 0.04	= : 0.03	y : 0.01	2 : 0.01	w : 0.01	i : 0.01	4 : 0.01	
f : 0.39	g : 0.14	e : 0.12	] : 0.07	d : 0.06	= : 0.04	h : 0.04	c : 0.04	2 : 0.03	i : 0.01	4 : 0.01	
f : 0.40	e : 0.17	g : 0.14	h : 0.06	= : 0.04	c : 0.04	2 : 0.03	4 : 0.03	d : 0.03	3 : 0.01	i : 0.01	
f : 0.39	g : 0.14	= : 0.06	e : 0.06	h : 0.06	] : 0.06	: : 0.04	4 : 0.04	2 : 0.03	c : 0.03	3 : 0.01	d : 0.01	7 : 0.01	i : 0.01	

#score	1264.8052621822383
#seq	64
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_UTR_m3_run1.txt

#BEAR
JJJJJJJJJJDDDD{A{CCC{EE	chr7:150777546-150777796(-)$1	250	10	33	11.9902
YYIIIIIIIII}EEEEE}GGGGG	chr10:977206-977511(-)$1	305	254	277	14.1137
IIIIIIIII}BBBBCCC}BB}EE	chr2:240322396-240322632(-)$1	236	195	218	15.3973
:IIIIIIIII}BB}A}DDDD}GG	chr19:42788418-42788702(+)$1	284	232	255	14.2238
::JJJJJJJJJJJ______DDDD	chr17:45772844-45773097(+)$1	253	230	253	12.7251
YFFFFFFFFFFFF}DDDDYYA}F	chr19:45854463-45854706(-)$1	243	177	200	10.2352
:JJJJJJJJJJ}CCCBB}FFFFF	chr1:245026236-245026527(-)$1	291	206	229	15.7531
CJJJJJJJJJJJ}BB}DDDDYYB	chr9:139743354-139743613(+)$1	259	186	209	15.8039
JJJJJJJJJJJ::DDDDJJJJJJ	chr11:3013163-3013460(-)$1	297	219	242	12.4009
JJJJJJJJJJJJYYEEEEEEEEE	chr12:131356618-131356923(+)$1	305	274	297	17.1161
HHHHHH}FFFFFF}CCC}BB}DD	chr3:98620115-98620419(-)$1	304	262	285	12.4592
HHHHHFFFFFFZZZCCC}CCC::	chr19:1478878-1479174(-)$1	296	259	282	11.1642
BB}IIIIIIIII~~~~CCCccce	chr2:242447504-242447740(-)$1	236	121	144	11.9840
ZZHHHHHHHH~~~~CCCEEEEEA	chr16:67231975-67232212(+)$1	237	178	201	12.1663
HHHHHHHH}BBZZZCCC}DDDD}	chr8:101963383-101963688(-)$1	305	254	277	11.8933
IIIIIIIII}AYYBB}A}BB}BB	chr20:57267787-57268055(+)$1	268	237	260	15.7502
JJJJJJJJJJJJYYEEEEEYYEE	chr17:74077666-74077932(-)$1	266	181	204	16.9962
:::IIIIIIIIIYYDDDDCCC::	chr4:1341000-1341263(+)$1	263	240	263	12.5378
B}JJJJJJJJJJYYFFFFFF}BB	chr7:100882662-100882934(-)$1	272	235	258	15.9858
FF}IIIIIIIIIYYA}GGGGGGG	chr17:27073901-27074153(+)$1	252	129	152	13.1493
::IIIIIIIII}BBCCC}EEEEE	chr18:45456860-45457121(-)$1	261	139	162	15.3115
c::IIIIIIIIIYYCCCYYDDDD	chr16:11890640-11890885(-)$1	245	156	179	13.3023
::JJJJJJJJJJJYYAFFFFFF:	chr3:184033015-184033278(+)$1	263	240	263	14.0576
YJJJJJJJJJJJ}DDDD}CCCCC	chr12:131356575-131356818(+)$1	243	135	158	15.9939
FFFFF}A}EEEEE}DDDDCCCBB	chr8:8243852-8244099(-)$1	247	177	200	9.0772
CCCIIIIIIIIIYYCCCZZZHHH	chr19:56185588-56185846(+)$1	258	163	186	13.8183
FF}IIIIIIIIIYYA}GGGGGGG	chr17:27073817-27074072(+)$1	255	213	236	13.1493
YAJJJJJJJJJJEEEEE}FFFFF	chr19:35500162-35500505(+)$1	343	226	249	16.4077
JJJJJJJJJJJ{FFFFFFEEEEE	chr20:57267709-57267987(+)$1	278	15	38	14.6261
HHHH}AA}A}A}EEEEE}BB~~~	chr9:35690609-35690869(-)$1	260	219	242	11.8233
JJJJJJJJJJ}FFFFFF}DDDDJ	chr8:12990823-12991137(-)$1	314	278	301	14.7193
}HHHHHHHH}DDDD}BB}EEEEE	chr1:155947805-155948094(-)$1	289	101	124	12.5075
JJJJJJJJJJJJYYCCC}CCC}D	chr19:1205796-1206061(+)$1	265	119	142	17.2173
FFFF}JJJJJJJJJJZZZCCC::	chr12:58005524-58005834(+)$1	310	286	309	11.5009
:IIIIIIIII}A}CCCBB}BBff	chr6:36164402-36164670(-)$1	268	144	167	12.7668
JJJJJJJJJJJJ}BB}BBYYA}D	chr3:197024613-197024855(-)$1	242	206	229	16.2749
HHHHJJJJJJJJJJJJFFFFFFh	chr17:7311430-7311681(+)$1	251	35	58	11.8860
ZJJJJJJJJJJ}EEEEE}CCC}B	chr19:1470165-1470435(-)$1	270	226	249	16.6287
:IIIIIIIIIA{CCC{FFFFFF{	chr20:35491869-35492130(-)$1	261	0	23	12.1120
IBB}HHHHHHHH}DDDD}EEEEE	chr17:38334271-38334518(+)$1	247	112	135	12.6866
JJJJJJJJJJYYDDDDA}DDDDA	chr20:62330514-62330790(-)$1	276	238	261	14.6546
CC}HHHHHHHH}EEEEE}EEEEE	chr1:182360594-182360836(-)$1	242	219	242	13.6076
BKKIIIIIIIIIEEEEEFFFFFF	chr1:38274022-38274309(+)$1	287	20	43	14.4033
JJJJJJJJJJ}BBDDDD}BB:::	chr7:5085632-5085913(+)$1	281	253	276	14.5387
BB}A}FFFFFF}EEEEE}BBBB:	chr6:30709918-30710208(-)$1	290	240	263	11.2542
JJJJJJJJJJJA~~~~DDDDYYB	chr19:3062229-3062530(-)$1	301	261	284	16.0508

#otherMatches

#Seq PSSM
GGCCCGGGGAGUCAUGUAGGGGU	chr7:150777546-150777796(-)$1	250	10	33	11.9902
Agggccgggccugggccggggcc	chr10:977206-977511(-)$1	305	254	277	14.1137
GCGGCGCGGAGCGCCGGAGCAGG	chr2:240322396-240322632(-)$1	236	195	218	15.3973
aggcaggcggcgcugugcgcagg	chr19:42788418-42788702(+)$1	284	232	255	14.2238
UAAGGCCUGGGGUGGAGAAGCGC	chr17:45772844-45773097(+)$1	253	230	253	12.7251
AGGGGAUGGUUGGAGGGGAGGUG	chr19:45854463-45854706(-)$1	243	177	200	10.2352
UCUCUGCGCUCUCUUCGGGAUAC	chr1:245026236-245026527(-)$1	291	206	229	15.7531
CAGGCCUCCCUCGUUGCCCCAGC	chr9:139743354-139743613(+)$1	259	186	209	15.8039
CCCGGCGCGCCUCGCCCGGCUGC	chr11:3013163-3013460(-)$1	297	219	242	12.4009
ccgucccggucccagucccguuc	chr12:131356618-131356923(+)$1	305	274	297	17.1161
CGGUGGUGAGAGCCAGGCGCUGC	chr3:98620115-98620419(-)$1	304	262	285	12.4592
CCCGCCUUCAGAGAUGGGCUCCA	chr19:1478878-1479174(-)$1	296	259	282	11.1642
GCCCGCCGCCCCGGAGGUCGGUC	chr2:242447504-242447740(-)$1	236	121	144	11.9840
CACCGCACAGUUCUGGCCACAGC	chr16:67231975-67232212(+)$1	237	178	201	12.1663
GGGAGGGGAGUCCACUGCGGGGU	chr8:101963383-101963688(-)$1	305	254	277	11.8933
GCUGCUCGGGCAGCUGCACCACC	chr20:57267787-57268055(+)$1	268	237	260	15.7502
CUUGUAGCCUAUGCGCUCAAUGG	chr17:74077666-74077932(-)$1	266	181	204	16.9962
ACCCCGCGGUCCAAGCCUCGCGU	chr4:1341000-1341263(+)$1	263	240	263	12.5378
GGAGACAUGGGGCUUUUCCAUGG	chr7:100882662-100882934(-)$1	272	235	258	15.9858
CCCUUCCCAGGACAGGGGCUGGG	chr17:27073901-27074153(+)$1	252	129	152	13.1493
uccccuccccuucccucuccucc	chr18:45456860-45457121(-)$1	261	139	162	15.3115
CUUCUGCCUGCCAUUCCCUCGGC	chr16:11890640-11890885(-)$1	245	156	179	13.3023
ACCCUCACCUCCCAACCCCAGGC	chr3:184033015-184033278(+)$1	263	240	263	14.0576
cagggguggcggcggcgggauag	chr12:131356575-131356818(+)$1	243	135	158	15.9939
GCACCGCGCGCAGACCUUCUGCG	chr8:8243852-8244099(-)$1	247	177	200	9.0772
CAGCCUCUCCUUCUCCCAUAGAC	chr19:56185588-56185846(+)$1	258	163	186	13.8183
CCCUUCCCAGGACAGGGGCUGGG	chr17:27073817-27074072(+)$1	255	213	236	13.1493
CCGGGUGCUGGGCCaggagcccc	chr19:35500162-35500505(+)$1	343	226	249	16.4077
ccugcccggccgggccugcccgc	chr20:57267709-57267987(+)$1	278	15	38	14.6261
AGCCGCCGGGUGCUCGCAGGAAG	chr9:35690609-35690869(-)$1	260	219	242	11.8233
GCCCCGCCCCUCGGGGGGUGGGC	chr8:12990823-12991137(-)$1	314	278	301	14.7193
cgaguggguagggguggggggag	chr1:155947805-155948094(-)$1	289	101	124	12.5075
UCGCCGCUCCGCCUCCUCCACAc	chr19:1205796-1206061(+)$1	265	119	142	17.2173
GGGGCGGGCUGGGGGUUCAGGGC	chr12:58005524-58005834(+)$1	310	286	309	11.5009
CGCCACGGAGCCCGGCCGAGGGG	chr6:36164402-36164670(-)$1	268	144	167	12.7668
GGGCCCGCGGAGGUGUGCAUGCG	chr3:197024613-197024855(-)$1	242	206	229	16.2749
cgccccuccucccuccuggggcg	chr17:7311430-7311681(+)$1	251	35	58	11.8860
UUCCAGGAGGGUGGCGGAGGCAG	chr19:1470165-1470435(-)$1	270	226	249	16.6287
ggcugcgcggggggcgggcugcg	chr20:35491869-35492130(-)$1	261	0	23	12.1120
GUCGCGGAGGAGCCGGGCAGCGG	chr17:38334271-38334518(+)$1	247	112	135	12.6866
ACCUGGGGGGGACCUCCAGCCCC	chr20:62330514-62330790(-)$1	276	238	261	14.6546
GUCGGGGCUGGCGCUGGUGGGGC	chr1:182360594-182360836(-)$1	242	219	242	13.6076
AAAGGGGGGCGGUGGUCGGGCCG	chr1:38274022-38274309(+)$1	287	20	43	14.4033
GCCCGGCCCGGGCCCCUCGGGAG	chr7:5085632-5085913(+)$1	281	253	276	14.5387
CCAUGUUUUUCACUUGUGGCCCA	chr6:30709918-30710208(-)$1	290	240	263	11.2542
cccggcgcccccagcagcccgag	chr19:3062229-3062530(-)$1	301	261	284	16.0508

#DB
((((((((((((((.(.(((.((	chr7:150777546-150777796(-)$1	1	10	33	11.9902
..))))))))).))))).)))))	chr10:977206-977511(-)$1	1	254	277	14.1137
))))))))).))))))).)).))	chr2:240322396-240322632(-)$1	1	195	218	15.3973
.))))))))).)).).)))).))	chr19:42788418-42788702(+)$1	1	232	255	14.2238
..)))))))))))......))))	chr17:45772844-45773097(+)$1	1	230	253	12.7251
.)))))))))))).))))..).)	chr19:45854463-45854706(-)$1	1	177	200	10.2352
.)))))))))).))))).)))))	chr1:245026236-245026527(-)$1	1	206	229	15.7531
)))))))))))).)).))))..)	chr9:139743354-139743613(+)$1	1	186	209	15.8039
)))))))))))..((((((((((	chr11:3013163-3013460(-)$1	1	219	242	12.4009
))))))))))))..)))))))))	chr12:131356618-131356923(+)$1	1	274	297	17.1161
)))))).)))))).))).)).))	chr3:98620115-98620419(-)$1	1	262	285	12.4592
)))))))))))...))).)))..	chr19:1478878-1479174(-)$1	1	259	282	11.1642
)).)))))))))....)))((((	chr2:242447504-242447740(-)$1	1	121	144	11.9840
..))))))))....)))))))))	chr16:67231975-67232212(+)$1	1	178	201	12.1663
)))))))).))...))).)))).	chr8:101963383-101963688(-)$1	1	254	277	11.8933
))))))))).)..)).).)).))	chr20:57267787-57268055(+)$1	1	237	260	15.7502
))))))))))))..)))))..))	chr17:74077666-74077932(-)$1	1	181	204	16.9962
...)))))))))..)))))))..	chr4:1341000-1341263(+)$1	1	240	263	12.5378
).))))))))))..)))))).))	chr7:100882662-100882934(-)$1	1	235	258	15.9858
)).)))))))))..).)))))))	chr17:27073901-27074153(+)$1	1	129	152	13.1493
..))))))))).))))).)))))	chr18:45456860-45457121(-)$1	1	139	162	15.3115
)..)))))))))..)))..))))	chr16:11890640-11890885(-)$1	1	156	179	13.3023
..)))))))))))..))))))).	chr3:184033015-184033278(+)$1	1	240	263	14.0576
.))))))))))).)))).)))))	chr12:131356575-131356818(+)$1	1	135	158	15.9939
))))).).))))).)))))))))	chr8:8243852-8244099(-)$1	1	177	200	9.0772
))))))))))))..)))...)))	chr19:56185588-56185846(+)$1	1	163	186	13.8183
)).)))))))))..).)))))))	chr17:27073817-27074072(+)$1	1	213	236	13.1493
.)))))))))))))))).)))))	chr19:35500162-35500505(+)$1	1	226	249	16.4077
(((((((((((.(((((((((((	chr20:57267709-57267987(+)$1	1	15	38	14.6261
)))).)).).).))))).))...	chr9:35690609-35690869(-)$1	1	219	242	11.8233
)))))))))).)))))).)))))	chr8:12990823-12991137(-)$1	1	278	301	14.7193
.)))))))).)))).)).)))))	chr1:155947805-155948094(-)$1	1	101	124	12.5075
))))))))))))..))).))).)	chr19:1205796-1206061(+)$1	1	119	142	17.2173
)))).))))))))))...)))..	chr12:58005524-58005834(+)$1	1	286	309	11.5009
.))))))))).).))))).))((	chr6:36164402-36164670(-)$1	1	144	167	12.7668
)))))))))))).)).))..).)	chr3:197024613-197024855(-)$1	1	206	229	16.2749
(((((((((((((((((((((((	chr17:7311430-7311681(+)$1	1	35	58	11.8860
.)))))))))).))))).))).)	chr19:1470165-1470435(-)$1	1	226	249	16.6287
.((((((((((.(((.((((((.	chr20:35491869-35492130(-)$1	1	0	23	12.1120
))).)))))))).)))).)))))	chr17:38334271-38334518(+)$1	1	112	135	12.6866
))))))))))..))))).)))))	chr20:62330514-62330790(-)$1	1	238	261	14.6546
)).)))))))).))))).)))))	chr1:182360594-182360836(-)$1	1	219	242	13.6076
(..((((((((((((((((((((	chr1:38274022-38274309(+)$1	1	20	43	14.4033
)))))))))).)))))).))...	chr7:5085632-5085913(+)$1	1	253	276	14.5387
)).).)))))).))))).)))).	chr6:30709918-30710208(-)$1	1	240	263	11.2542
))))))))))))....))))..)	chr19:3062229-3062530(-)$1	1	261	284	16.0508

#PSSM
J : 0.23	: : 0.17	H : 0.10	Y : 0.08	B : 0.08	F : 0.08	I : 0.06	C : 0.06	Z : 0.04	c : 0.02	} : 0.02	
J : 0.32	H : 0.13	I : 0.10	: : 0.10	F : 0.10	B : 0.06	C : 0.04	Y : 0.02	Z : 0.02	} : 0.02	A : 0.02	K : 0.02	
J : 0.41	I : 0.15	H : 0.15	} : 0.10	F : 0.06	: : 0.04	C : 0.02	B : 0.02	K : 0.02	
J : 0.41	I : 0.30	H : 0.17	F : 0.06	} : 0.02	A : 0.02	
J : 0.43	I : 0.30	H : 0.15	} : 0.06	F : 0.04	
J : 0.45	I : 0.30	H : 0.13	F : 0.06	} : 0.02	A : 0.02	
J : 0.45	I : 0.30	H : 0.10	F : 0.06	A : 0.04	} : 0.02	
J : 0.45	I : 0.30	H : 0.10	F : 0.08	} : 0.04	
J : 0.45	I : 0.30	F : 0.08	H : 0.08	} : 0.02	E : 0.02	A : 0.02	
J : 0.45	I : 0.26	} : 0.08	F : 0.08	H : 0.06	B : 0.02	E : 0.02	
J : 0.36	I : 0.19	} : 0.08	F : 0.08	A : 0.06	D : 0.04	B : 0.04	H : 0.04	~ : 0.02	E : 0.02	Y : 0.02	
J : 0.26	} : 0.15	I : 0.15	B : 0.06	F : 0.06	D : 0.04	Z : 0.04	Y : 0.04	{ : 0.04	A : 0.04	: : 0.02	~ : 0.02	E : 0.02	H : 0.02	
Y : 0.21	E : 0.17	} : 0.10	B : 0.08	J : 0.08	F : 0.08	D : 0.06	~ : 0.06	C : 0.04	Z : 0.04	: : 0.02	
Y : 0.21	D : 0.15	E : 0.15	B : 0.10	} : 0.08	C : 0.06	~ : 0.06	Z : 0.04	F : 0.04	J : 0.04	_ : 0.02	
C : 0.26	E : 0.19	D : 0.17	A : 0.06	B : 0.06	F : 0.06	~ : 0.04	J : 0.04	{ : 0.02	_ : 0.02	Y : 0.02	} : 0.02	
C : 0.21	E : 0.19	D : 0.17	} : 0.13	F : 0.06	A : 0.04	B : 0.04	~ : 0.04	_ : 0.02	Z : 0.02	J : 0.02	{ : 0.02	
C : 0.21	D : 0.21	E : 0.19	F : 0.13	B : 0.08	A : 0.04	G : 0.04	{ : 0.02	_ : 0.02	Z : 0.02	
} : 0.43	D : 0.13	F : 0.13	E : 0.06	C : 0.04	G : 0.04	Z : 0.04	B : 0.04	_ : 0.02	J : 0.02	Y : 0.02	
C : 0.19	E : 0.17	F : 0.15	B : 0.13	D : 0.13	G : 0.06	Y : 0.06	_ : 0.02	J : 0.02	Z : 0.02	} : 0.02	
C : 0.17	D : 0.17	B : 0.15	F : 0.15	E : 0.15	G : 0.06	Y : 0.06	J : 0.02	c : 0.02	Z : 0.02	
E : 0.15	C : 0.15	F : 0.13	} : 0.10	D : 0.10	G : 0.06	Y : 0.06	A : 0.04	B : 0.04	{ : 0.02	J : 0.02	c : 0.02	H : 0.02	~ : 0.02	: : 0.02	
E : 0.21	D : 0.13	F : 0.13	G : 0.08	} : 0.08	: : 0.08	B : 0.08	Y : 0.04	J : 0.02	c : 0.02	C : 0.02	H : 0.02	~ : 0.02	f : 0.02	
E : 0.19	B : 0.13	: : 0.13	D : 0.10	G : 0.08	F : 0.08	J : 0.04	A : 0.04	e : 0.02	} : 0.02	C : 0.02	H : 0.02	~ : 0.02	f : 0.02	h : 0.02	{ : 0.02	

#score	634.2245280810132
#seq	46
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_UTR_m1_run2.txt

#BEAR
ffddddvvvvvvvvvvvvvdddd	chr19:7991523-7991772(-)$1	249	133	156	21.6816
hhhhhhvvvvvvvvvvvvvhhhh	chr6:109688647-109688896(-)$1	249	177	200	20.9742
===[bbuuuuuuuuuuuubb]==	chr10:5499006-5499259(+)$1	253	79	102	23.0699
:eeeeeuuuuuuuuuuuueeeee	chr2:176791708-176791955(-)$1	247	107	130	22.2785
fffffftttttttttttffffff	chr2:85547429-85547662(-)$1	233	92	115	21.6266
ddddwwwwwwwwwwwwwwdddd]	chr7:151832234-151832527(-)$1	293	119	142	20.9841
fffffwwwwwwwwwwwwwwffff	chr2:70131409-70131668(+)$1	259	120	143	22.3173
gggggggtttttttttttggggg	chr10:60158211-60158467(+)$1	256	84	107	21.7794
iiiiyyyyyyyyyyyyyyyyiii	chr17:74730936-74731168(-)$1	232	26	49	22.2460
fffffftttttttttttffffff	chr16:56717937-56718183(+)$1	246	38	61	21.6266
[eeeeeuuuuuuuuuuuueeeee	chr17:62496606-62496864(-)$1	258	87	110	23.3803
eee[bbuuuuuuuuuuuubb]ee	chr11:33163242-33163501(-)$1	259	143	166	22.8778
::ddddvvvvvvvvvvvvvdddd	chr12:1018346-1018579(+)$1	233	45	68	19.4497
iiiiiiuuuuuuuuuuuuiiiii	chr7:75956813-75957056(-)$1	243	66	89	23.7480
ffffffuuuuuuuuuuuufffff	chr7:107259299-107259533(+)$1	234	37	60	23.2783
ffffbbuuuuuuuuuuuubb]ff	chr2:47387622-47387874(-)$1	252	52	75	22.9355
!eeeeeuuuuuuuuuuuueeeee	chr22:39080126-39080391(+)$1	265	184	207	23.3225
gggggguuuuuuuuuuuuggggg	chr19:39221001-39221248(+)$1	247	165	188	23.7563
eeeeyyyyyyyyyyyyyyyyeee	chr11:130014309-130014551(+)$1	242	174	197	21.8681
eeecccuuuuuuuuuuuuccc::	chr6:7287795-7288047(-)$1	252	151	174	20.9693
ffffyyyyyyyyyyyyyyyyfff	chr2:242291426-242291701(+)$1	275	29	52	21.9666
eebbwwwwwwwwwwwwwwbb]ee	chr2:65496340-65496586(+)$1	246	203	226	21.0788
iiiiiiitttttttttttiiiii	chr1:22005510-22005767(-)$1	257	180	203	21.6074
ggddddtttttttttttddddff	chr18:20877298-20877580(-)$1	282	103	126	21.0769
ffffffuuuuuuuuuuuufffff	chr4:141302426-141302682(+)$1	256	70	93	23.2783
:eeeeeuuuuuuuuuuuueeeee	chr19:41813357-41813587(+)$1	230	75	98	22.2785
fffffwwwwwwwwwwwwwwffff	chr15:44821067-44821311(+)$1	244	110	133	22.3173
fffffwwwwwwwwwwwwwwffff	chr19:3976113-3976331(-)$1	218	95	118	22.3173
f[cccvvvvvvvvvvvvvccc]f	chr2:68405969-68406200(-)$1	231	114	137	22.5882
hh[bbvvvvvvvvvvvvvbbhhh	chr17:30707179-30707466(+)$1	287	201	224	21.2788
gggggguuuuuuuuuuuuggggg	chr22:41831879-41832120(-)$1	241	12	35	23.7563
[ddddvvvvvvvvvvvvvdddd]	chr14:69846784-69847054(-)$1	270	138	161	21.8924
"ddddvvvvvvvvvvvvvdddd]	chr1:38462878-38463115(-)$1	237	85	108	21.7131
fffffftttttttttttffffff	chr6:80409346-80409603(+)$1	257	204	227	21.6266
iiiiyyyyyyyyyyyyyyyyiii	chr1:21100446-21100696(-)$1	250	181	204	22.2460
ggggggvvvvvvvvvvvvvgggg	chr10:74767789-74768028(-)$1	239	203	226	23.0406
ddddwwwwwwwwwwwwwwddddF	chr19:49468645-49468850(+)$1	205	134	157	20.6010
!eeeeeuuuuuuuuuuuueeeee	chrX:70520817-70521049(+)$1	232	200	223	23.3225
eeeeevvvvvvvvvvvvveeeee	chr1:47141429-47141701(-)$1	272	64	87	22.5469
hhhhhwwwwwwwwwwwwwwhhhh	chr21:44269686-44269929(-)$1	243	152	175	20.9746
gggggguuuuuuuuuuuuggggg	chr10:70744074-70744313(+)$1	239	90	113	23.7563
eee!!bbtttttttttttbb22e	chr20:32255111-32255361(-)$1	250	79	102	20.4584
iiiiiiuuuuuuuuuuuuiiiii	chr12:22218284-22218566(+)$1	282	10	33	23.7480
iiiiiiuuuuuuuuuuuuiiiii	chr5:90666515-90666802(-)$1	287	67	90	23.7480
====xxxxxxxxxxxxxxx====	chr8:74463815-74464084(-)$1	269	208	231	18.7180
fffffftttttttttttffffff	chr9:35697259-35697525(-)$1	266	130	153	21.6266
hhhhhhvvvvvvvvvvvvvhhhh	chr1:115259741-115259955(-)$1	214	114	137	20.9742
:eeeeeuuuuuuuuuuuueeeee	chr2:38960938-38961235(+)$1	297	114	137	22.2785
fffffftttttttttttffffff	chr5:72209959-72210234(+)$1	275	71	94	21.6266
ddddyyyyyyyyyyyyyyyyddd	chr11:67165723-67165953(-)$1	230	72	95	20.9564
ggggggvvvvvvvvvvvvvgggg	chr7:128499088-128499321(+)$1	233	125	148	23.0406
[cccyyyyyyyyyyyyyyyyccc	chr12:53565461-53565725(-)$1	264	80	103	21.7082
:eeeeeuuuuuuuuuuuueeeee	chr2:27604006-27604254(-)$1	248	138	161	22.2785
gggggxxxxxxxxxxxxxxxggg	chr6:109689939-109690170(-)$1	231	69	92	18.7659
iiiiyyyyyyyyyyyyyyyyiii	chr17:74730989-74731208(-)$1	219	66	89	22.2460
ffffffuuuuuuuuuuuufffff	chr18:9402222-9402495(+)$1	273	16	39	23.2783
:ddddwwwwwwwwwwwwwwdddd	chr12:48437550-48437807(-)$1	257	113	136	20.3646
iiiiiiuuuuuuuuuuuuiiiii	chr2:159313883-159314139(+)$1	256	37	60	23.7480
ffffffuuuuuuuuuuuufffff	chr13:42896908-42897179(+)$1	271	141	164	23.2783

#otherMatches

#Seq PSSM
AUUUGGAAAGAAUAAAACACCGA	chr19:7991523-7991772(-)$1	249	133	156	21.6816
AGAGGUUUACUUCUCCCUUGCCU	chr6:109688647-109688896(-)$1	249	177	200	20.9742
GUUCUUUUUUCUUUUUUUAAUGG	chr10:5499006-5499259(+)$1	253	79	102	23.0699
ucuugcucucaacguccuguaag	chr2:176791708-176791955(-)$1	247	107	130	22.2785
AAAGAUCCUCAGCUACAGUCUUU	chr2:85547429-85547662(-)$1	233	92	115	21.6266
UCUGGUACUGACACUUCACAGGC	chr7:151832234-151832527(-)$1	293	119	142	20.9841
CAGGAUCUCAGUUCUCCUUUCUU	chr2:70131409-70131668(+)$1	259	120	143	22.3173
AUGUCUUUUUUUUUGUACAAGGC	chr10:60158211-60158467(+)$1	256	84	107	21.7794
GUUAUUUUGUAACAUUUGUCUAA	chr17:74730936-74731168(-)$1	232	26	49	22.2460
UGCUCUCAGAUGUAAAUAGAGCA	chr16:56717937-56718183(+)$1	246	38	61	21.6266
UCUUUACACCUAAUAACAUAAAG	chr17:62496606-62496864(-)$1	258	87	110	23.3803
uuuucauaauccuaacauuguaa	chr11:33163242-33163501(-)$1	259	143	166	22.8778
CUGGGCUCUCUCCUACCCUGCCC	chr12:1018346-1018579(+)$1	233	45	68	19.4497
GGGGGCAGGGUAGGUGGGGCUUU	chr7:75956813-75957056(-)$1	243	66	89	23.7480
UAAGCCUGAUGAUACUAUGGUUU	chr7:107259299-107259533(+)$1	234	37	60	23.2783
CUGUCAAAAAAAUAUGCAUGUAU	chr2:47387622-47387874(-)$1	252	52	75	22.9355
AUCCCUAUGUAUGAGAGGAGGGA	chr22:39080126-39080391(+)$1	265	184	207	23.3225
AAGGAUUCCUGCAGCAUCAUCUU	chr19:39221001-39221248(+)$1	247	165	188	23.7563
UUUCUUUUUAUUUUAAAUCUGAA	chr11:130014309-130014551(+)$1	242	174	197	21.8681
GUUUCAGAAUAUGUAAAAUGACU	chr6:7287795-7288047(-)$1	252	151	174	20.9693
GUGCCAUCCACAUUUUAACAGUA	chr2:242291426-242291701(+)$1	275	29	52	21.9666
AGGUUUUCUUCUACUUGUGCUCU	chr2:65496340-65496586(+)$1	246	203	226	21.0788
GGGAAUAAAGUUCUGUUAUAUUU	chr1:22005510-22005767(-)$1	257	180	203	21.6074
caaggccucacucuaucgccuag	chr18:20877298-20877580(-)$1	282	103	126	21.0769
UGAAACUUAAAGAUGAAUGUUUU	chr4:141302426-141302682(+)$1	256	70	93	23.2783
CAGUGAUACCCUUUAUUUUUACU	chr19:41813357-41813587(+)$1	230	75	98	22.2785
cccugaucacccuaccucacagg	chr15:44821067-44821311(+)$1	244	110	133	22.3173
AUUUUAACAAACGCAUUAAGAGG	chr19:3976113-3976331(-)$1	218	95	118	22.3173
UUGAAUGUUUAGUUUUUCUUCUG	chr2:68405969-68406200(-)$1	231	114	137	22.5882
GAACAUACCUUACUCCUUUGUCU	chr17:30707179-30707466(+)$1	287	201	224	21.2788
CCGGCCUGUGAUUUAUUUGGUUG	chr22:41831879-41832120(-)$1	241	12	35	23.7563
GGUGGAAAUGCAGUUUAGCCAUG	chr14:69846784-69847054(-)$1	270	138	161	21.8924
UGUGGCUCCUUUUCUAAACCACC	chr1:38462878-38463115(-)$1	237	85	108	21.7131
AUCUGCCCUAGGUUAUAGUAGAU	chr6:80409346-80409603(+)$1	257	204	227	21.6266
acuaagaucauauagcuagcuag	chr1:21100446-21100696(-)$1	250	181	204	22.2460
UACUUUGUGGGUUCUUUUAAAAG	chr10:74767789-74768028(-)$1	239	203	226	23.0406
CGUCAGAAUUAUUCCACCGACGU	chr19:49468645-49468850(+)$1	205	134	157	20.6010
AUUUUCUGUGGUGUUUUUGAAGG	chrX:70520817-70521049(+)$1	232	200	223	23.3225
GGUUUUGGUUUUGGUUUUAAACC	chr1:47141429-47141701(-)$1	272	64	87	22.5469
GUGGAUGUUUUCAUGUUGUUCCG	chr21:44269686-44269929(-)$1	243	152	175	20.9746
ACUAGAUAUUUCUUGCCCUCUGG	chr10:70744074-70744313(+)$1	239	90	113	23.7563
GGUCUCGAACAGCAGCUCCGCCA	chr20:32255111-32255361(-)$1	250	79	102	20.4584
UUGCUUUUAUUUUUGAUUAAGUA	chr12:22218284-22218566(+)$1	282	10	33	23.7480
AAAAAACGCACUGACAUUUUUUU	chr5:90666515-90666802(-)$1	287	67	90	23.7480
UUCUCCCUUUUUUUACAUAAGGA	chr8:74463815-74464084(-)$1	269	208	231	18.7180
GGGGCUGCAGAGUUAUAAGCCCC	chr9:35697259-35697525(-)$1	266	130	153	21.6266
GUGUAGCUUCUGUUCAACUUUAU	chr1:115259741-115259955(-)$1	214	114	137	20.9742
UAAAGCUAUUCUCACAUUGCUUU	chr2:38960938-38961235(+)$1	297	114	137	22.2785
CGGUUUUAAUUUUUGAUAAGCUG	chr5:72209959-72210234(+)$1	275	71	94	21.6266
UAUUUUUCUUUUCUUUUUUUAAU	chr11:67165723-67165953(-)$1	230	72	95	20.9564
GGCCUUUUUUACACACUGCGAGG	chr7:128499088-128499321(+)$1	233	125	148	23.0406
CCUUUCUUUGCCCUUUUUAUGAG	chr12:53565461-53565725(-)$1	264	80	103	21.7082
CUGUUGUACACUUUCAAUCAACA	chr2:27604006-27604254(-)$1	248	138	161	22.2785
CUUUAUAAAUUCUGCAAAUCUAA	chr6:109689939-109690170(-)$1	231	69	92	18.7659
GUUAUUUUGUAACAUUUGUCUAA	chr17:74730989-74731208(-)$1	219	66	89	22.2460
AUAAGCCACAUUUCUAAAGUUUA	chr18:9402222-9402495(+)$1	273	16	39	23.2783
CGUUGUACCGCAUUCUUUCCAGC	chr12:48437550-48437807(-)$1	257	113	136	20.3646
CUGCUGCUCCCCUCCCCCCGGCA	chr2:159313883-159314139(+)$1	256	37	60	23.7480
UUACUUGUGCAGUGUUAAAAGUA	chr13:42896908-42897179(+)$1	271	141	164	23.2783

#DB
))((((.............))))	chr19:7991523-7991772(-)$1	1	133	156	21.6816
((((((.............))))	chr6:109688647-109688896(-)$1	1	177	200	20.9742
(((.((............)).))	chr10:5499006-5499259(+)$1	1	79	102	23.0699
.(((((............)))))	chr2:176791708-176791955(-)$1	1	107	130	22.2785
((((((...........))))))	chr2:85547429-85547662(-)$1	1	92	115	21.6266
((((..............)))).	chr7:151832234-151832527(-)$1	1	119	142	20.9841
(((((..............))))	chr2:70131409-70131668(+)$1	1	120	143	22.3173
(((((((...........)))))	chr10:60158211-60158467(+)$1	1	84	107	21.7794
((((................)))	chr17:74730936-74731168(-)$1	1	26	49	22.2460
((((((...........))))))	chr16:56717937-56718183(+)$1	1	38	61	21.6266
.(((((............)))))	chr17:62496606-62496864(-)$1	1	87	110	23.3803
(((.((............)).))	chr11:33163242-33163501(-)$1	1	143	166	22.8778
..((((.............))))	chr12:1018346-1018579(+)$1	1	45	68	19.4497
((((((............)))))	chr7:75956813-75957056(-)$1	1	66	89	23.7480
((((((............)))))	chr7:107259299-107259533(+)$1	1	37	60	23.2783
((((((............)).))	chr2:47387622-47387874(-)$1	1	52	75	22.9355
.(((((............)))))	chr22:39080126-39080391(+)$1	1	184	207	23.3225
((((((............)))))	chr19:39221001-39221248(+)$1	1	165	188	23.7563
((((................)))	chr11:130014309-130014551(+)$1	1	174	197	21.8681
)))(((............)))..	chr6:7287795-7288047(-)$1	1	151	174	20.9693
((((................)))	chr2:242291426-242291701(+)$1	1	29	52	21.9666
((((..............)).))	chr2:65496340-65496586(+)$1	1	203	226	21.0788
(((((((...........)))))	chr1:22005510-22005767(-)$1	1	180	203	21.6074
))((((...........))))((	chr18:20877298-20877580(-)$1	1	103	126	21.0769
((((((............)))))	chr4:141302426-141302682(+)$1	1	70	93	23.2783
.(((((............)))))	chr19:41813357-41813587(+)$1	1	75	98	22.2785
(((((..............))))	chr15:44821067-44821311(+)$1	1	110	133	22.3173
(((((..............))))	chr19:3976113-3976331(-)$1	1	95	118	22.3173
(.(((.............))).)	chr2:68405969-68406200(-)$1	1	114	137	22.5882
((.((.............)))))	chr17:30707179-30707466(+)$1	1	201	224	21.2788
((((((............)))))	chr22:41831879-41832120(-)$1	1	12	35	23.7563
.((((.............)))).	chr14:69846784-69847054(-)$1	1	138	161	21.8924
.((((.............)))).	chr1:38462878-38463115(-)$1	1	85	108	21.7131
((((((...........))))))	chr6:80409346-80409603(+)$1	1	204	227	21.6266
((((................)))	chr1:21100446-21100696(-)$1	1	181	204	22.2460
((((((.............))))	chr10:74767789-74768028(-)$1	1	203	226	23.0406
((((..............)))))	chr19:49468645-49468850(+)$1	1	134	157	20.6010
.(((((............)))))	chrX:70520817-70521049(+)$1	1	200	223	23.3225
(((((.............)))))	chr1:47141429-47141701(-)$1	1	64	87	22.5469
(((((..............))))	chr21:44269686-44269929(-)$1	1	152	175	20.9746
((((((............)))))	chr10:70744074-70744313(+)$1	1	90	113	23.7563
(((..((...........))..)	chr20:32255111-32255361(-)$1	1	79	102	20.4584
((((((............)))))	chr12:22218284-22218566(+)$1	1	10	33	23.7480
((((((............)))))	chr5:90666515-90666802(-)$1	1	67	90	23.7480
((((...............))))	chr8:74463815-74464084(-)$1	1	208	231	18.7180
((((((...........))))))	chr9:35697259-35697525(-)$1	1	130	153	21.6266
((((((.............))))	chr1:115259741-115259955(-)$1	1	114	137	20.9742
.(((((............)))))	chr2:38960938-38961235(+)$1	1	114	137	22.2785
((((((...........))))))	chr5:72209959-72210234(+)$1	1	71	94	21.6266
((((................)))	chr11:67165723-67165953(-)$1	1	72	95	20.9564
((((((.............))))	chr7:128499088-128499321(+)$1	1	125	148	23.0406
.(((................)))	chr12:53565461-53565725(-)$1	1	80	103	21.7082
.(((((............)))))	chr2:27604006-27604254(-)$1	1	138	161	22.2785
(((((...............)))	chr6:109689939-109690170(-)$1	1	69	92	18.7659
((((................)))	chr17:74730989-74731208(-)$1	1	66	89	22.2460
((((((............)))))	chr18:9402222-9402495(+)$1	1	16	39	23.2783
.((((..............))))	chr12:48437550-48437807(-)$1	1	113	136	20.3646
((((((............)))))	chr2:159313883-159314139(+)$1	1	37	60	23.7480
((((((............)))))	chr13:42896908-42897179(+)$1	1	141	164	23.2783

#PSSM
f : 0.27	g : 0.13	i : 0.13	: : 0.10	e : 0.10	h : 0.06	d : 0.05	[ : 0.05	= : 0.03	! : 0.03	" : 0.01	
f : 0.25	e : 0.22	g : 0.13	i : 0.13	d : 0.10	h : 0.06	= : 0.03	: : 0.01	[ : 0.01	c : 0.01	
f : 0.23	e : 0.20	d : 0.15	i : 0.13	g : 0.11	h : 0.05	= : 0.03	c : 0.03	b : 0.01	[ : 0.01	
f : 0.23	d : 0.15	e : 0.15	i : 0.13	g : 0.11	h : 0.05	c : 0.05	[ : 0.03	b : 0.03	! : 0.01	= : 0.01	
f : 0.20	e : 0.13	g : 0.11	y : 0.11	d : 0.10	i : 0.08	b : 0.06	h : 0.05	w : 0.05	c : 0.03	! : 0.01	x : 0.01	
f : 0.15	w : 0.13	e : 0.11	y : 0.11	g : 0.10	i : 0.08	v : 0.08	b : 0.06	d : 0.05	h : 0.03	x : 0.03	c : 0.01	
u : 0.37	v : 0.18	w : 0.13	y : 0.11	t : 0.10	x : 0.03	g : 0.01	i : 0.01	b : 0.01	
u : 0.37	v : 0.18	t : 0.15	w : 0.13	y : 0.11	x : 0.03	
u : 0.37	v : 0.18	t : 0.15	w : 0.13	y : 0.11	x : 0.03	
u : 0.37	v : 0.18	t : 0.15	w : 0.13	y : 0.11	x : 0.03	
u : 0.37	v : 0.18	t : 0.15	w : 0.13	y : 0.11	x : 0.03	
u : 0.37	v : 0.18	t : 0.15	w : 0.13	y : 0.11	x : 0.03	
u : 0.37	v : 0.18	t : 0.15	w : 0.13	y : 0.11	x : 0.03	
u : 0.37	v : 0.18	t : 0.15	w : 0.13	y : 0.11	x : 0.03	
u : 0.37	v : 0.18	t : 0.15	w : 0.13	y : 0.11	x : 0.03	
u : 0.37	v : 0.18	t : 0.15	w : 0.13	y : 0.11	x : 0.03	
u : 0.37	v : 0.18	t : 0.15	w : 0.13	y : 0.11	x : 0.03	
u : 0.37	v : 0.18	w : 0.13	y : 0.11	f : 0.08	t : 0.05	x : 0.03	d : 0.01	
f : 0.15	e : 0.13	y : 0.11	v : 0.10	b : 0.10	d : 0.08	w : 0.08	i : 0.08	g : 0.06	c : 0.03	x : 0.03	
f : 0.20	d : 0.13	e : 0.13	y : 0.11	b : 0.10	g : 0.10	i : 0.08	h : 0.05	c : 0.03	= : 0.01	x : 0.01	
f : 0.22	d : 0.15	e : 0.15	i : 0.13	g : 0.11	h : 0.06	] : 0.06	c : 0.05	2 : 0.01	= : 0.01	
f : 0.25	e : 0.18	d : 0.13	i : 0.13	g : 0.11	h : 0.06	= : 0.03	: : 0.01	] : 0.01	2 : 0.01	c : 0.01	
f : 0.27	e : 0.20	i : 0.13	g : 0.11	d : 0.06	h : 0.06	] : 0.05	= : 0.03	: : 0.01	F : 0.01	c : 0.01	

#score	1302.2803757894665
#seq	59
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_transcript_m3_run1.txt

#BEAR
ggggg[bbbb[bb####ggggggga[bba[dddd[d	chr5:43290989-43291295(-)$1	306	10	46	10.2981
iiiiiiii[bb####eeeeebbccc[ccc$$$$$gg	chr1:46767592-46767837(-)$1	245	1	37	12.4663
dd"""ggggggg!!dddd[ccceeeee$$$$$bb[b	chr1:28176889-28177164(+)$1	275	101	137	10.7295
[==========="""cccccc$$$$$ddddccc!!b	chr1:150594888-150595160(-)$1	272	146	182	13.3778
ccc[ccc[a####bb[a[ccc[ccc[a####bb[a[	chr16:428192-428475(-)$1	283	137	173	14.2587
[ffffffdddd"""cccccc[eeeee[bb!!ccc[c	chr16:89006657-89006920(-)$1	263	120	156	11.5881
[eeeee[a####a[ffffff####a[ccc$$$$$a[	chr8:142425779-142426037(+)$1	258	73	109	13.0987
ffffiiiiiiiii[cccccc[dddd[ccc[dddd[c	chr13:92002907-92003119(+)$1	212	87	123	11.1983
eeee####ccc[bbbb!!ccc[a[a[ccc[bb[ccc	chr3:101292956-101293225(+)$1	269	133	169	11.5652
eeeeccc^^^^^^^^^^^^^^^^^^^^^^^^ccc]e	chrM:1681-1891(+)$1	210	167	203	11.2253
d[ccc!!bb$$$$$ccc[a[a[a[a[a[a[a[a'''	chr2:97560065-97560300(-)$1	235	119	155	12.4821
d!!iiiiiiiiiaccc[ccc!!dddd!!bb[ccc!!	chr22:50037414-50037665(-)$1	251	77	113	12.0540
ff[ggggggg[dddddddd!!eeeee$$$$$ccc[a	chr19:47732013-47732278(-)$1	265	95	131	10.3859
e[ccc[eeeee[a[a[eeeee[ccc[ccc!!cccdd	chr16:88587381-88587639(+)$1	258	77	113	12.2661
ddd!!bb"""bb####eeeee[ccc[ccc!!dddd[	chr17:80230765-80231027(-)$1	262	121	157	11.9151
fffff[eeeee!!dddd[ffffff!!bb^^^^^^^^	chr15:74701947-74702202(-)$1	255	98	134	9.7155
eeeeccc^^^^^^^^^^^^^^^^^^^^^^^^ccc]e	chrM:1708-1914(+)$1	206	140	176	11.2253
!bb####dddd"""ccc[ccc[bb[dddd[ccc[bb	chr1:1192716-1193004(-)$1	288	48	84	11.3878
c!!ccc[a[a[dddd[ccca[a[dddd[bb####a[	chr22:20110857-20111110(+)$1	253	67	103	11.0204
dddd"""dddd####bb"""eeeee$$$$$ccc"""	chr19:900343-900617(-)$1	274	91	127	11.5787
[ffffff[a####dddd[a[bb$$$$$ccc[ccc[b	chr22:20110649-20110903(+)$1	254	71	107	11.7901
cceeeee[==========bb"""bb[ccc!!eeeee	chr20:31172139-31172406(-)$1	267	105	141	11.5687
=========!!ffffff[a$$$$$a[ccc[dddd##	chr7:158656440-158656679(+)$1	239	8	44	12.2077
dddd[gggggggccc!!dddd[ggggggg"""cccl	chr16:447352-447607(+)$1	255	160	196	10.4841
[bb[ggggggg####bb[dddd"""ccc####bb[c	chr17:77812520-77812778(-)$1	258	64	100	13.4245
cc[==========[bb"""ccc[ffffff[bb####	chr5:134263329-134263533(+)$1	204	27	63	12.2072
[============[abb[a!!a!!ffffff!!bb[d	chr19:1410217-1410468(+)$1	251	102	138	12.9921
eee!!eeeee[eeeee!!dddd[cccccc!!ccc[a	chr12:132401530-132401757(+)$1	227	2	38	11.1281
ddd[bb!!dddd!!ccc!!bb$$$$$ccc!!bb[dd	chr19:802343-802595(+)$1	252	124	160	11.5521
ee[ccceeeee####ffffffdddd[ccc!!eeeee	chr19:3698791-3699036(-)$1	245	94	130	10.6692
=========a[a[dddd[a[bb[bbdddd!!ccc$$	chr22:20110239-20110467(+)$1	228	98	134	12.8105
ccccc[dddd!!a[ccc####ffffff####a$$$$	chr6:117996612-117996872(+)$1	260	97	133	12.2525
[dddd[bb"""bb!!a####ccc[a[ccc!!bb!!e	chr17:56408164-56408404(-)$1	240	11	47	12.9715
d[a[dddd[a[a[bb[a[a[a!!a[a[a[bb[a[a[	chr12:132403189-132403488(+)$1	299	163	199	11.8920
ccacccbb[bb"""ccc[ccc[ccc[ddddccc!!d	chr13:113421732-113422002(+)$1	270	62	98	12.4491
hhhhhhha[ccca!!dddd[a!!==========!!d	chr9:139560211-139560493(+)$1	282	16	52	11.3061
:==========!!dddd[bb[bb[dddd####eeee	chr15:38776655-38776900(+)$1	245	141	177	10.9202
g============####dddd!!a[dddd!!ccc!!	chr11:61644619-61644884(-)$1	265	141	177	14.1507
[ccc"""ccc[a[dddd[a[bb[bbdddd!!ccc$$	chr22:20110290-20110535(+)$1	245	47	83	12.0970
eeeeccc^^^^^^^^^^^^^^^^^^^^^^^^ccc]e	chrM:1691-1893(+)$1	202	157	193	11.2253
Dccc[ffffff"""ccc[a[ccc[a[ccc[a[bb[e	chr17:27620614-27620872(-)$1	258	106	142	12.3968
ccc[ggggggg^^^^^^^^^^^^^^^^^^^^^^ggg	chr9:139725816-139726113(+)$1	297	220	256	12.2542
eeeeccc^^^^^^^^^^^^^^^^^^^^^^^^ccc]e	chrM:1714-1919(+)$1	205	134	170	11.2253
c[ggggggg[bb[bb[eeeee[a!!dddd!!a"""b	chr6:149638675-149638946(+)$1	271	98	134	11.5621
!bb[bb[dddd[a[ccc[ccc"""ccc[a[a!!a[a	chr12:132401568-132401818(+)$1	250	82	118	12.9756
hhhhhhh!!ccc!!eeeee[a!!bb[bb"""ccc[a	chr21:11085332-11085623(-)$1	291	87	123	12.2923
fff####dddd"""ggggggg[ffffff####dddd	chr17:80230611-80230874(-)$1	263	68	104	11.0845
[a[============a[ccca!!dddd[a!!=====	chr9:139560093-139560362(+)$1	269	126	162	13.8222
ccciiiiiiiii!!ccc[ccc[ccc[ccc!!ccc[b	chr9:140463547-140463862(-)$1	315	141	177	15.0516

#otherMatches

#Seq PSSM
CUGCCACAGCAGCAGAACCUGAAGCAGCUGUCAUUA	chr5:43290989-43291295(-)$1	306	10	46	10.2981
CGGCCGGGACCAAAGGGCCGGGCCUGGAUGGAGGGC	chr1:46767592-46767837(-)$1	245	1	37	12.4663
GGGAAUGGGGUGGAAGGGUGAUGGGGAGCUAAUGAA	chr1:28176889-28177164(+)$1	275	101	137	10.7295
GAAUUAGGGCUUGGAGUUGGUAAAAACAUUCCUGAC	chr1:150594888-150595160(-)$1	272	146	182	13.3778
GCAgugcggguggcgauggcagugcggguggcgaug	chr16:428192-428475(-)$1	283	137	173	14.2587
GAGCCUCUGUGGAGGGACAGAUGGCUGGAAACGCAG	chr16:89006657-89006920(-)$1	263	120	156	11.5881
guggggagaggguguggggugggguggggagagggg	chr8:142425779-142426037(+)$1	258	73	109	13.0987
GAGUGCUUUUUGUUCUAAGGUGCAUCUAGUGCAGAU	chr13:92002907-92003119(+)$1	212	87	123	11.1983
CCUGAAAAGUCGCAGCGAGCUGGAGCCGCCGGAGGU	chr3:101292956-101293225(+)$1	269	133	169	11.5652
UUCUGCAUAAUGAAUUAACUAGAAAUAACUUUGCAA	chrM:1681-1891(+)$1	210	167	203	11.2253
ugugggucuguguguacgugggugaguggguggggg	chr2:97560065-97560300(-)$1	235	119	155	12.4821
GGAAGCUCUGGGCCUUAGGAUGGGGUGGGGGCAGGU	chr22:50037414-50037665(-)$1	251	77	113	12.0540
GGUGGGCGGUCAGGCUGGCCAGUCCCGUGUGAGUCC	chr19:47732013-47732278(-)$1	265	95	131	10.3859
auggaugggaggguggguggguggauggaugauuag	chr16:88587381-88587639(+)$1	258	77	113	12.2661
ccgggguggggcauggucucuggggagccgaccugg	chr17:80230765-80231027(-)$1	262	121	157	11.9151
GGUGGUUAUGGGAGGGGGUGGGGUGAGGGAAACGGG	chr15:74701947-74702202(-)$1	255	98	134	9.7155
UUCUGCAUAAUGAAUUAACUAGAAAUAACUUUGCAA	chrM:1708-1914(+)$1	206	140	176	11.2253
GUGGGGGUCUGGGUCCAGUCGGGUGGUGGGUACAGG	chr1:1192716-1193004(-)$1	288	48	84	11.3878
uugucuggggguguuggggugugugguguugggggg	chr22:20110857-20111110(+)$1	253	67	103	11.0204
gccaggaugggguagguaggauauggauggggcggg	chr19:900343-900617(-)$1	274	91	127	11.5787
gucuggggagguguacaguguguggugucugGGGGG	chr22:20110649-20110903(+)$1	254	71	107	11.7901
GGGGGUGUGGAUGUGUGUCCGAACGUGUGUCCCUGA	chr20:31172139-31172406(-)$1	267	105	141	11.5687
GGACGUCCUUAGCUCCCGGUGUGGGGGCGGGGGGGA	chr7:158656440-158656679(+)$1	239	8	44	12.2077
CCUUCUCGCCUCCCCAGGCCCCAGGCUGCAGGCGCC	chr16:447352-447607(+)$1	255	160	196	10.4841
ggaggcgggguggaggugggguggagggaggagggg	chr17:77812520-77812778(-)$1	258	64	100	13.4245
UUUCGAAGAAGAUAUAAAAUAUGAUUAGUUCUAUGG	chr5:134263329-134263533(+)$1	204	27	63	12.2072
AUCCUGGUGGGUUUGGCACGCGGACCCUACAUGGUG	chr19:1410217-1410468(+)$1	251	102	138	12.9921
UUAAGGCGGCGUUUGGGACACAAGCCCCGGACCCGG	chr12:132401530-132401757(+)$1	227	2	38	11.1281
GGGUGUGAUAUCCACUGGUUCUUUCUGAUGCGAUGG	chr19:802343-802595(+)$1	252	124	160	11.5521
guggggguggggggccggggagggCUGGAAGGUCAG	chr19:3698791-3699036(-)$1	245	94	130	10.6692
GUAGUAUCUAGGGGGCUGUGGUGUCUACUGguggug	chr22:20110239-20110467(+)$1	228	98	134	12.8105
GUUCGGGCUCGGGGGGCGGGGGGACGCGGAGCGAUG	chr6:117996612-117996872(+)$1	260	97	133	12.2525
AGUCUUUGGGGGCGGGGAGGGCUGGACAUGUGGAAC	chr17:56408164-56408404(-)$1	240	11	47	12.9715
agugugugggguguagagugugugggguguggggug	chr12:132403189-132403488(+)$1	299	163	199	11.8920
GCCCCCGUGGAAAGGUGGGGAGGAUGUAGGGGUAUC	chr13:113421732-113422002(+)$1	270	62	98	12.4491
gggcggcaguggcggcggcgcgugcgcgccccggAU	chr9:139560211-139560493(+)$1	282	16	52	11.3061
AUAUGGAGGAgguggugguggugguggugguggugg	chr15:38776655-38776900(+)$1	245	141	177	10.9202
CGGUGAGGGUGUCUUCCCAGGAGGAGUUGCUGGGCU	chr11:61644619-61644884(-)$1	265	141	177	14.1507
GUAGUAUCUAGGGGGCUGUGGUGUCUACUGguggug	chr22:20110290-20110535(+)$1	245	47	83	12.0970
UUCUGCAUAAUGAAUUAACUAGAAAUAACUUUGCAA	chrM:1691-1893(+)$1	202	157	193	11.2253
ggggguggaggacaggagagauggggguggggcugg	chr17:27620614-27620872(-)$1	258	106	142	12.3968
GGCAUGCUUCUGCUGGGUUGGAUGUUGGAAAUGAGA	chr9:139725816-139726113(+)$1	297	220	256	12.2542
UUCUGCAUAAUGAAUUAACUAGAAAUAACUUUGCAA	chrM:1714-1919(+)$1	205	134	170	11.2253
ggugggggcagagggagguggggaggcCGAGCGAGC	chr6:149638675-149638946(+)$1	271	98	134	11.5621
gaggcugugggaugggggucggaggcugugggaugg	chr12:132401568-132401818(+)$1	250	82	118	12.9756
gguuuuagugguggugguggugguggugguggucgu	chr21:11085332-11085623(-)$1	291	87	123	12.2923
gggggaggggcagggcgggggugggggcagcgggcc	chr17:80230611-80230874(-)$1	263	68	104	11.0845
gcgggcucgggcggcaguggcggcggcgcgugcgcg	chr9:139560093-139560362(+)$1	269	126	162	13.8222
gucgggggguggauagauggugagauggauggaagg	chr9:140463547-140463862(-)$1	315	141	177	15.0516

#DB
(((((.((((.((....((((((((.(((.((((.(	chr5:43290989-43291295(-)$1	1	10	46	10.2981
((((((((.((....((((((((((.(((.....((	chr1:46767592-46767837(-)$1	1	1	37	12.4663
((...(((((((..((((.((((((((.....((.(	chr1:28176889-28177164(+)$1	1	101	137	10.7295
.(((((((((((...((((((.....(((((((..(	chr1:150594888-150595160(-)$1	1	146	182	13.3778
(((.(((.(....((.(.(((.(((.(....((.(.	chr16:428192-428475(-)$1	1	137	173	14.2587
.((((((((((...((((((.(((((.((..(((.(	chr16:89006657-89006920(-)$1	1	120	156	11.5881
.(((((.(....(.((((((....(.(((.....(.	chr8:142425779-142426037(+)$1	1	73	109	13.0987
(((((((((((((.((((((.((((.(((.((((.(	chr13:92002907-92003119(+)$1	1	87	123	11.1983
((((....(((.((((..(((.(.(.(((.((.(((	chr3:101292956-101293225(+)$1	1	133	169	11.5652
(((((((........................))).)	chrM:1681-1891(+)$1	1	167	203	11.2253
(.(((..((.....(((.(.(.(.(.(.(.(.(...	chr2:97560065-97560300(-)$1	1	119	155	12.4821
(..(((((((((((((.(((..((((..((.(((..	chr22:50037414-50037665(-)$1	1	77	113	12.0540
((.(((((((.((((((((..(((((.....(((.(	chr19:47732013-47732278(-)$1	1	95	131	10.3859
(.(((.(((((.(.(.(((((.(((.(((..(((((	chr16:88587381-88587639(+)$1	1	77	113	12.2661
(((..((...((....(((((.(((.(((..((((.	chr17:80230765-80231027(-)$1	1	121	157	11.9151
(((((.(((((..((((.((((((..((........	chr15:74701947-74702202(-)$1	1	98	134	9.7155
(((((((........................))).)	chrM:1708-1914(+)$1	1	140	176	11.2253
.((....((((...(((.(((.((.((((.(((.((	chr1:1192716-1193004(-)$1	1	48	84	11.3878
(..(((.(.(.((((.((((.(.((((.((....(.	chr22:20110857-20111110(+)$1	1	67	103	11.0204
((((...((((....((...(((((.....(((...	chr19:900343-900617(-)$1	1	91	127	11.5787
.((((((.(....((((.(.((.....(((.(((.(	chr22:20110649-20110903(+)$1	1	71	107	11.7901
(((((((.((((((((((((...((.(((..(((((	chr20:31172139-31172406(-)$1	1	105	141	11.5687
(((((((((..((((((.(.....(.(((.((((..	chr7:158656440-158656679(+)$1	1	8	44	12.2077
((((.((((((((((..((((.(((((((...(((.	chr16:447352-447607(+)$1	1	160	196	10.4841
.((.(((((((....((.((((...(((....((.(	chr17:77812520-77812778(-)$1	1	64	100	13.4245
((.((((((((((.((...(((.((((((.((....	chr5:134263329-134263533(+)$1	1	27	63	12.2072
.((((((((((((.(((.(..(..((((((..((.(	chr19:1410217-1410468(+)$1	1	102	138	12.9921
(((..(((((.(((((..((((.((((((..(((.(	chr12:132401530-132401757(+)$1	1	2	38	11.1281
(((.((..((((..(((..((.....(((..((.((	chr19:802343-802595(+)$1	1	124	160	11.5521
((.((((((((....((((((((((.(((..(((((	chr19:3698791-3699036(-)$1	1	94	130	10.6692
)))))))))(.(.((((.(.((.((((((..(((..	chr22:20110239-20110467(+)$1	1	98	134	12.8105
))(((.((((..(.(((....((((((....(....	chr6:117996612-117996872(+)$1	1	97	133	12.2525
.((((.((...((..(....(((.(.(((..((..(	chr17:56408164-56408404(-)$1	1	11	47	12.9715
(.(.((((.(.(.((.(.(.(..(.(.(.((.(.(.	chr12:132403189-132403488(+)$1	1	163	199	11.8920
))))))((.((...(((.(((.(((.(((((((..(	chr13:113421732-113422002(+)$1	1	62	98	12.4491
((((((((.((((..((((.(..((((((((((..(	chr9:139560211-139560493(+)$1	1	16	52	11.3061
.((((((((((..((((.((.((.((((....((((	chr15:38776655-38776900(+)$1	1	141	177	10.9202
)((((((((((((....((((..(.((((..(((..	chr11:61644619-61644884(-)$1	1	141	177	14.1507
.(((...(((.(.((((.(.((.((((((..(((..	chr22:20110290-20110535(+)$1	1	47	83	12.0970
(((((((........................))).)	chrM:1691-1893(+)$1	1	157	193	11.2253
((((.((((((...(((.(.(((.(.(((.(.((.(	chr17:27620614-27620872(-)$1	1	106	142	12.3968
(((.(((((((......................)))	chr9:139725816-139726113(+)$1	1	220	256	12.2542
(((((((........................))).)	chrM:1714-1919(+)$1	1	134	170	11.2253
(.(((((((.((.((.(((((.(..((((..(...(	chr6:149638675-149638946(+)$1	1	98	134	11.5621
.((.((.((((.(.(((.(((...(((.(.(..(.(	chr12:132401568-132401818(+)$1	1	82	118	12.9756
(((((((..(((..(((((.(..((.((...(((.(	chr21:11085332-11085623(-)$1	1	87	123	12.2923
(((....((((...(((((((.((((((....((((	chr17:80230611-80230874(-)$1	1	68	104	11.0845
.(.(((((((((((((.((((..((((.(..(((((	chr9:139560093-139560362(+)$1	1	126	162	13.8222
)))(((((((((..(((.(((.(((.(((..(((.(	chr9:140463547-140463862(-)$1	1	141	177	15.0516

#PSSM
[ : 0.18	c : 0.18	d : 0.16	e : 0.16	f : 0.08	g : 0.04	! : 0.04	= : 0.04	h : 0.04	i : 0.02	: : 0.02	D : 0.02	
c : 0.18	e : 0.16	d : 0.12	= : 0.12	f : 0.12	[ : 0.08	b : 0.06	! : 0.04	h : 0.04	g : 0.02	i : 0.02	a : 0.02	
c : 0.16	e : 0.16	= : 0.12	f : 0.10	d : 0.10	[ : 0.08	b : 0.06	g : 0.04	! : 0.04	a : 0.04	h : 0.04	i : 0.02	" : 0.02	
= : 0.16	c : 0.16	e : 0.14	[ : 0.12	f : 0.08	g : 0.06	i : 0.06	d : 0.06	! : 0.04	# : 0.04	h : 0.04	" : 0.02	
c : 0.22	= : 0.16	g : 0.10	i : 0.08	" : 0.06	f : 0.06	# : 0.06	e : 0.04	! : 0.04	[ : 0.04	b : 0.04	d : 0.04	h : 0.04	
= : 0.16	c : 0.16	g : 0.12	[ : 0.10	i : 0.08	f : 0.06	e : 0.06	# : 0.06	b : 0.06	" : 0.04	h : 0.04	! : 0.02	d : 0.02	
= : 0.16	g : 0.12	c : 0.10	e : 0.10	b : 0.08	i : 0.08	f : 0.06	[ : 0.06	# : 0.06	! : 0.04	" : 0.04	d : 0.04	h : 0.04	
= : 0.16	d : 0.14	g : 0.12	b : 0.08	i : 0.08	^ : 0.08	e : 0.08	[ : 0.06	a : 0.06	! : 0.04	# : 0.02	" : 0.02	c : 0.02	f : 0.02	
= : 0.18	d : 0.14	g : 0.12	[ : 0.10	^ : 0.08	e : 0.08	i : 0.06	b : 0.04	a : 0.04	c : 0.04	" : 0.04	# : 0.02	f : 0.02	! : 0.02	
= : 0.14	d : 0.14	g : 0.10	c : 0.08	^ : 0.08	e : 0.08	b : 0.06	# : 0.06	i : 0.06	a : 0.06	" : 0.04	$ : 0.02	! : 0.02	f : 0.02	[ : 0.02	
[ : 0.14	= : 0.14	d : 0.12	b : 0.08	g : 0.08	^ : 0.08	# : 0.06	i : 0.06	c : 0.06	e : 0.06	! : 0.04	$ : 0.02	" : 0.02	f : 0.02	
# : 0.14	= : 0.12	" : 0.10	^ : 0.10	b : 0.08	i : 0.06	[ : 0.06	d : 0.06	! : 0.06	a : 0.06	g : 0.04	c : 0.04	$ : 0.02	f : 0.02	e : 0.02	
# : 0.14	! : 0.12	" : 0.12	a : 0.12	^ : 0.10	= : 0.10	[ : 0.08	b : 0.06	d : 0.04	i : 0.02	$ : 0.02	f : 0.02	c : 0.02	e : 0.02	
# : 0.14	[ : 0.14	d : 0.14	! : 0.12	" : 0.12	^ : 0.10	b : 0.08	c : 0.04	= : 0.04	$ : 0.02	f : 0.02	e : 0.02	
c : 0.24	d : 0.16	# : 0.14	b : 0.10	^ : 0.10	f : 0.04	a : 0.04	= : 0.04	e : 0.04	! : 0.04	" : 0.02	g : 0.02	
c : 0.24	d : 0.16	[ : 0.10	b : 0.10	^ : 0.10	# : 0.06	e : 0.06	f : 0.06	a : 0.04	= : 0.02	! : 0.02	g : 0.02	
c : 0.24	d : 0.16	e : 0.10	^ : 0.10	# : 0.06	f : 0.06	! : 0.06	b : 0.06	a : 0.04	[ : 0.04	= : 0.02	" : 0.02	g : 0.02	
[ : 0.32	c : 0.12	e : 0.10	d : 0.10	^ : 0.10	! : 0.06	g : 0.04	f : 0.04	" : 0.04	# : 0.04	= : 0.02	
c : 0.24	a : 0.16	d : 0.12	e : 0.10	^ : 0.10	f : 0.06	g : 0.04	" : 0.04	b : 0.04	# : 0.04	[ : 0.02	! : 0.02	
c : 0.26	[ : 0.16	^ : 0.10	e : 0.08	d : 0.08	f : 0.06	b : 0.06	g : 0.04	! : 0.04	# : 0.04	a : 0.02	" : 0.02	$ : 0.02	
c : 0.22	b : 0.10	^ : 0.10	a : 0.10	[ : 0.08	e : 0.08	d : 0.08	! : 0.06	g : 0.04	# : 0.04	f : 0.04	" : 0.02	$ : 0.02	
[ : 0.22	! : 0.12	b : 0.10	^ : 0.10	c : 0.08	d : 0.08	$ : 0.06	e : 0.06	f : 0.04	a : 0.04	" : 0.04	g : 0.02	# : 0.02	
c : 0.16	! : 0.12	^ : 0.10	[ : 0.10	e : 0.08	$ : 0.08	d : 0.06	a : 0.06	f : 0.06	" : 0.06	g : 0.04	b : 0.04	# : 0.02	
c : 0.14	d : 0.10	[ : 0.10	^ : 0.10	b : 0.10	e : 0.08	$ : 0.08	f : 0.08	g : 0.04	" : 0.04	! : 0.04	a : 0.04	# : 0.02	= : 0.02	
c : 0.16	a : 0.14	d : 0.12	^ : 0.10	e : 0.08	b : 0.08	f : 0.08	$ : 0.06	[ : 0.06	! : 0.04	g : 0.02	" : 0.02	= : 0.02	
[ : 0.34	d : 0.18	^ : 0.10	$ : 0.08	f : 0.08	e : 0.06	c : 0.06	! : 0.02	g : 0.02	a : 0.02	= : 0.02	
c : 0.32	d : 0.20	^ : 0.10	f : 0.08	b : 0.06	$ : 0.06	a : 0.04	[ : 0.04	e : 0.02	! : 0.02	g : 0.02	= : 0.02	
c : 0.32	d : 0.16	^ : 0.10	b : 0.08	[ : 0.08	$ : 0.06	f : 0.06	# : 0.04	! : 0.02	g : 0.02	a : 0.02	= : 0.02	
c : 0.30	d : 0.14	^ : 0.12	# : 0.10	a : 0.08	$ : 0.06	b : 0.06	f : 0.04	g : 0.02	[ : 0.02	= : 0.02	" : 0.02	
! : 0.28	[ : 0.18	^ : 0.12	$ : 0.10	# : 0.10	b : 0.06	d : 0.04	" : 0.04	c : 0.02	f : 0.02	= : 0.02	
! : 0.30	# : 0.12	^ : 0.12	$ : 0.08	c : 0.08	d : 0.06	b : 0.06	a : 0.06	[ : 0.04	" : 0.04	= : 0.02	
c : 0.38	b : 0.10	d : 0.08	# : 0.08	$ : 0.06	[ : 0.06	^ : 0.04	e : 0.04	! : 0.04	a : 0.04	= : 0.04	" : 0.02	
c : 0.40	b : 0.14	d : 0.10	$ : 0.06	e : 0.06	a : 0.04	^ : 0.04	# : 0.04	= : 0.04	[ : 0.02	" : 0.02	! : 0.02	
c : 0.34	d : 0.10	b : 0.08	! : 0.08	[ : 0.08	$ : 0.06	e : 0.06	# : 0.04	" : 0.04	' : 0.02	^ : 0.02	g : 0.02	a : 0.02	= : 0.02	
[ : 0.26	! : 0.12	a : 0.08	] : 0.08	d : 0.08	e : 0.06	$ : 0.06	g : 0.04	c : 0.04	" : 0.04	# : 0.04	' : 0.02	^ : 0.02	b : 0.02	= : 0.02	
e : 0.18	d : 0.14	b : 0.12	[ : 0.10	c : 0.08	a : 0.08	$ : 0.06	g : 0.04	! : 0.04	# : 0.04	' : 0.02	^ : 0.02	" : 0.02	l : 0.02	= : 0.02	

#score	586.6023112903105
#seq	49
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_UTR_m2_run1.txt

#BEAR
ee[a[ccc!!annnnna22ccc]a]e	chr3:195635566-195635828(-)$1	262	133	159	13.1079
%==========nnnnn==========	chr6:10747948-10748214(+)$1	266	213	239	15.0149
EEiiiiiiiiinnnnniiiiiiiii:	chr1:150947022-150947338(-)$1	316	36	62	12.2095
cccc[ccccccnnnnnccc]ccc]cc	chr6:111136245-111136499(-)$1	254	23	49	14.6153
d==========nnnnn==========	chr18:77748342-77748627(-)$1	285	104	130	15.5454
===========nnnnn==========	chr16:447962-448207(+)$1	245	118	144	15.5962
ddd[ccc[cccnnnnnccc]ccc]dd	chr12:122708995-122709300(-)$1	305	107	133	14.1079
!ccc[bb[cccnnnnncccbbccc]e	chr1:249138596-249138858(+)$1	262	109	135	13.4105
hhhhhhh[cccnnnnnccc]hhhhhh	chr14:96001321-96001588(+)$1	267	182	208	12.1059
!!ccc[bbcccnnnnnccc]bbccc2	chr12:58145880-58146155(-)$1	275	2	28	13.4393
fff####ddddnnnnndddd333fff	chr19:18548010-18548286(-)$1	276	37	63	12.5525
CCiiiiiiiiinnnnniiiiiiiii:	chr19:1249810-1250086(+)$1	276	4	30	12.1071
cca[gggggggnnnnnggggggg]a]	chr4:110650915-110651259(-)$1	344	102	128	14.2277
cc[bb[eeeeennnnneeeee22bb]	chr16:11036097-11036387(-)$1	290	225	251	11.4142
ffffff!!cccnnnnnccc]ffffff	chr4:151935881-151936115(-)$1	234	127	153	13.0651
ddccc"""cccnnnnnccc4444ccc	chr7:150028704-150029008(+)$1	304	165	191	14.0628
dd####eeeeennnnneeeee333dd	chr4:80994086-80994359(-)$1	273	193	219	12.5669
b[ffffffcccnnnnnccc]ffffff	chr19:44118326-44118659(-)$1	333	296	322	12.7557
===========lll===========:	chr22:18232770-18233023(-)$1	253	166	192	10.0821
cc!!gggggggnnnnnggggggg]cc	chr5:140699770-140700099(-)$1	329	229	255	14.3204
:ccc[bb[cccnnnnnccc]bb]ccc	chr16:74330749-74330987(+)$1	238	208	234	13.0469
eebbccc[cccnnnnnccc]ccc333	chr17:49232910-49233195(+)$1	285	249	275	13.8358
####gggggggnnnnngggggggeee	chr11:126146203-126146436(+)$1	233	58	84	13.5367
gggggggddddnnnnndddd]ggggg	chr16:75600647-75600906(+)$1	259	84	110	12.9801
===========nnnnn==========	chr16:447884-448124(+)$1	240	196	222	15.5962
dddd[a[a[bbnnnnnbb22a]a]dd	chr1:110527363-110527637(+)$1	274	172	198	12.3607
:cccddddcccnnnnnccc]dddd]c	chr16:15732966-15733249(-)$1	283	125	151	11.8350
eee!!ccccccnnnnnccc]ccc333	chr22:21801904-21802153(+)$1	249	50	76	14.3906
d[iiiiiiiiinnnnniiiiiiiii]	chr9:139249205-139249520(+)$1	315	132	158	14.9865
===========lll===========e	chr19:4038376-4038642(+)$1	266	139	165	10.8632
===========nnnnn==========	chr16:3777285-3777562(-)$1	277	107	133	15.5962
!affffff!!annnnna22ffffff]	chr7:158459765-158460126(-)$1	361	146	172	11.9570
eeeee!!ddddnnnnnddddeeeee4	chr8:29931455-29931673(-)$1	218	15	41	11.7367
#ccc!!bb[bbnnnnnbb]bb22ccc	chr3:185542662-185542933(-)$1	271	127	153	12.1685
ccc"""cccbbnnnnnbb]ccccccf	chr9:115983798-115984060(+)$1	262	37	63	13.3695
dddd!!eeeeennnnneeeee22ddd	chrX:30233624-30233873(+)$1	249	50	76	11.6208
ffffccc[cccnnnnnccc22ccccc	chr19:41859438-41859784(-)$1	346	122	148	13.3104
b!!a[a!!cccnnnnnccc22a]a22	chr14:100705155-100705451(+)$1	296	171	197	13.7544
!!bb[bb[cccnnnnnccc]bb]bb2	chr19:1407575-1407876(+)$1	301	157	183	12.7843
ggggg"""cccoooooocccgggggg	chr7:65338240-65338499(+)$1	259	111	137	9.8223
ggg!!ccc!!annnnna22ccc]ggg	chr7:140402564-140402846(+)$1	282	32	58	13.5464
dddd"""ddddnnnnndddd22dddd	chr16:66586429-66586752(+)$1	323	271	297	11.6236
ddd[a[eeeeennnnneeeee]a]dd	chr12:120907161-120907575(-)$1	414	35	61	12.2840
eggggggg[bbnnnnnbb]ggggggg	chr17:73389682-73389947(-)$1	265	102	128	13.3631
ffffff[ddddnnnnndddd]fffff	chr19:56632442-56632729(-)$1	287	45	71	11.5507
!eeeee[ddddnnnnndddd]eeeee	chr14:50359733-50359978(+)$1	245	132	158	11.5815
::iiiiiiiiinnnnniiiiiiiiiE	chr1:19949863-19950139(+)$1	276	210	236	12.0817
####eeeeebbnnnnnbb]eeeee33	chr22:19419003-19419262(-)$1	259	13	39	11.9579
ddd[eeeee[annnnna]eeeee]dd	chr15:55681462-55681732(-)$1	270	94	120	12.0977
b[ccc[cccbbnnnnnbb]cccccc]	chr6:43737961-43738178(+)$1	217	4	30	13.1526
ccc[gggggggnnnnnggggggg]cc	chr1:11979592-11979907(-)$1	315	136	162	14.3123

#otherMatches

#Seq PSSM
CGGGGUGCAGGAGGGACAGGUGGUGC	chr3:195635566-195635828(-)$1	262	133	159	13.1079
UAACUUUUAGGGAUUAUUUAGGAGUU	chr6:10747948-10748214(+)$1	266	213	239	15.0149
CUCGGGCUCAGCUCGACUGGGCUCGG	chr1:150947022-150947338(-)$1	316	36	62	12.2095
ggcgggcggcgggcggcgcgcgcgcg	chr6:111136245-111136499(-)$1	254	23	49	14.6153
UGCGGGCGGGACCGGAUUUCGUCCGU	chr18:77748342-77748627(-)$1	285	104	130	15.5454
CAGAUUCUGUGGGACAUACAGGGUCU	chr16:447962-448207(+)$1	245	118	144	15.5962
AGGUACAGACAGUGUUUGUGUGUUCC	chr12:122708995-122709300(-)$1	305	107	133	14.1079
UUGCCUGUGGGAUGAGCUCCAGCAUG	chr1:249138596-249138858(+)$1	262	109	135	13.4105
uccgggcgugcgggcggcgggcucgg	chr14:96001321-96001588(+)$1	267	182	208	12.1059
UUCCGCGCGCCUCUUUGGCAGCUGGU	chr12:58145880-58146155(-)$1	275	2	28	13.4393
UCUGGAGGCCUGUAGUGGGCGAGGGA	chr19:18548010-18548286(-)$1	276	37	63	12.5525
GGAgggggcggcggccccgcccccUG	chr19:1249810-1250086(+)$1	276	4	30	12.1071
CGGCGCUGCCUGCCCGAGGCGGUUCA	chr4:110650915-110651259(-)$1	344	102	128	14.2277
CUGCGAGCGCCAGGGAGGCGCCACGA	chr16:11036097-11036387(-)$1	290	225	251	11.4142
GGAGAGAGAUUGGACAAAUAUUCUCC	chr4:151935881-151936115(-)$1	234	127	153	13.0651
CUGGAUAAGCUAUUGCAGCACUUUCU	chr7:150028704-150029008(+)$1	304	165	191	14.0628
GUCCCAGGGACCCCUUGUCCCGAAGC	chr4:80994086-80994359(-)$1	273	193	219	12.5669
GUGGUGGCGUCGGCUUGACUGUCAUC	chr19:44118326-44118659(-)$1	333	296	322	12.7557
UCCCCUGCGGGUGCCUUGUGGGGGGC	chr22:18232770-18233023(-)$1	253	166	192	10.0821
AUCUGAUUUAAUGAACUUAAGUCUGU	chr5:140699770-140700099(-)$1	329	229	255	14.3204
GGCGGCCGCGGACGAGCUGGGGACGC	chr16:74330749-74330987(+)$1	238	208	234	13.0469
UCCCAUUUUGAUUCCUUCAUAGUAUA	chr17:49232910-49233195(+)$1	285	249	275	13.8358
AGUUCGUAACCGCACUGGUUGUGGCA	chr11:126146203-126146436(+)$1	233	58	84	13.5367
CGUUUGUUUCUCCCACAGAACACAGA	chr16:75600647-75600906(+)$1	259	84	110	12.9801
CAGAUUCUGUGGGACAUACAGGGUCU	chr16:447884-448124(+)$1	240	196	222	15.5962
GCCGACGCAGCUCGACGCAGgggccg	chr1:110527363-110527637(+)$1	274	172	198	12.3607
GAUGAAAGGAUGUUGAAUCACUUUGC	chr16:15732966-15733249(-)$1	283	125	151	11.8350
AGUGUAACGUUUAUGUGACUGUUUGA	chr22:21801904-21802153(+)$1	249	50	76	14.3906
AGGCUUCCCGGGAUGUCUGGGAAGUG	chr9:139249205-139249520(+)$1	315	132	158	14.9865
UGUUGUAUUUUUUGAAAGUGCAAUAA	chr19:4038376-4038642(+)$1	266	139	165	10.8632
GAGGGGGGUUUUGUUUGGAUUCUUUU	chr16:3777285-3777562(-)$1	277	107	133	15.5962
GGGUCUCUGAGGGAGGCGGAGGGACA	chr7:158459765-158460126(-)$1	361	146	172	11.9570
UCCUAUGACGAGAGUUUCGUUAGGAU	chr8:29931455-29931673(-)$1	218	15	41	11.7367
aggcgaggagcgccggguaccgggcc	chr3:185542662-185542933(-)$1	271	127	153	12.1685
UCGGUGGCGGUGGUGGACACGUCGAG	chr9:115983798-115984060(+)$1	262	37	63	13.3695
UCCUGACUUCCGCUUUGGAGGCGAGG	chrX:30233624-30233873(+)$1	249	50	76	11.6208
AGUCGCCGAGGAGCAGCCUGAGGCCC	chr19:41859438-41859784(-)$1	346	122	148	13.3104
cgaggcgaggcggggagccgagacga	chr14:100705155-100705451(+)$1	296	171	197	13.7544
AGGAGGCCCGGGAGCGCCGAGCGUCG	chr19:1407575-1407876(+)$1	301	157	183	12.7843
cggGAAGAUGGCGGCUCCCGUCCUGC	chr7:65338240-65338499(+)$1	259	111	137	9.8223
GAGGAGUUUUGGAUGACUUAACGCUU	chr7:140402564-140402846(+)$1	282	32	58	13.5464
GGCCGGGCCGCGGAGGGCGGGAGGCU	chr16:66586429-66586752(+)$1	323	271	297	11.6236
CGCUCCGCGUUCCCACAAUGCAGUGC	chr12:120907161-120907575(-)$1	414	35	61	12.2840
GUGGCAUUGUGUGUCCCAGAGUGCCG	chr17:73389682-73389947(-)$1	265	102	128	13.3631
CGGAAGCGGCCGGGAAGGUCACUUCC	chr19:56632442-56632729(-)$1	287	45	71	11.5507
GCGGCUGGAGGUAACCCCUUGGGCCG	chr14:50359733-50359978(+)$1	245	132	158	11.5815
CAAAGUAUGUACAGAAUAUAUAUUUC	chr1:19949863-19950139(+)$1	276	210	236	12.0817
GGGAGCCGCCUGAGGAGGAgcggcgc	chr22:19419003-19419262(-)$1	259	13	39	11.9579
UUUGUAGACCUGAAAGAUGUCUGAAA	chr15:55681462-55681732(-)$1	270	94	120	12.0977
CGGGUAGCUCGGAGGUCGUGGCGCUG	chr6:43737961-43738178(+)$1	217	4	30	13.1526
CUGUGGUUUUGUACUUUGGGGCUUCA	chr1:11979592-11979907(-)$1	315	136	162	14.3123

#DB
((.(.(((..(.....)..))).).)	chr3:195635566-195635828(-)$1	1	133	159	13.1079
.((((((((((.....))))))))))	chr6:10747948-10748214(+)$1	1	213	239	15.0149
(((((((((((.....))))))))).	chr1:150947022-150947338(-)$1	1	36	62	12.2095
((((.((((((.....))).))).))	chr6:111136245-111136499(-)$1	1	23	49	14.6153
)((((((((((.....))))))))))	chr18:77748342-77748627(-)$1	1	104	130	15.5454
(((((((((((.....))))))))))	chr16:447962-448207(+)$1	1	118	144	15.5962
(((.(((.(((.....))).))).))	chr12:122708995-122709300(-)$1	1	107	133	14.1079
.(((.((.(((.....)))))))).)	chr1:249138596-249138858(+)$1	1	109	135	13.4105
(((((((.(((.....))).))))))	chr14:96001321-96001588(+)$1	1	182	208	12.1059
..(((.(((((.....))).))))).	chr12:58145880-58146155(-)$1	1	2	28	13.4393
(((....((((.....))))...)))	chr19:18548010-18548286(-)$1	1	37	63	12.5525
(((((((((((.....))))))))).	chr19:1249810-1250086(+)$1	1	4	30	12.1071
(((.(((((((.....))))))).).	chr4:110650915-110651259(-)$1	1	102	128	14.2277
((.((.(((((.....)))))..)).	chr16:11036097-11036387(-)$1	1	225	251	11.4142
((((((..(((.....))).))))))	chr4:151935881-151936115(-)$1	1	127	153	13.0651
(((((...(((.....)))....)))	chr7:150028704-150029008(+)$1	1	165	191	14.0628
((....(((((.....)))))...))	chr4:80994086-80994359(-)$1	1	193	219	12.5669
(.(((((((((.....))).))))))	chr19:44118326-44118659(-)$1	1	296	322	12.7557
(((((((((((...))))))))))).	chr22:18232770-18233023(-)$1	1	166	192	10.0821
((..(((((((.....))))))).))	chr5:140699770-140700099(-)$1	1	229	255	14.3204
.(((.((.(((.....))).)).)))	chr16:74330749-74330987(+)$1	1	208	234	13.0469
(((((((.(((.....))).)))...	chr17:49232910-49233195(+)$1	1	249	275	13.8358
....(((((((.....))))))))))	chr11:126146203-126146436(+)$1	1	58	84	13.5367
(((((((((((.....)))).)))))	chr16:75600647-75600906(+)$1	1	84	110	12.9801
(((((((((((.....))))))))))	chr16:447884-448124(+)$1	1	196	222	15.5962
((((.(.(.((.....))..).).))	chr1:110527363-110527637(+)$1	1	172	198	12.3607
.((((((((((.....))).)))).)	chr16:15732966-15733249(-)$1	1	125	151	11.8350
(((..((((((.....))).)))...	chr22:21801904-21802153(+)$1	1	50	76	14.3906
(.(((((((((.....))))))))).	chr9:139249205-139249520(+)$1	1	132	158	14.9865
(((((((((((...))))))))))))	chr19:4038376-4038642(+)$1	1	139	165	10.8632
(((((((((((.....))))))))))	chr16:3777285-3777562(-)$1	1	107	133	15.5962
.(((((((..(.....)..)))))).	chr7:158459765-158460126(-)$1	1	146	172	11.9570
(((((..((((.....))))))))).	chr8:29931455-29931673(-)$1	1	15	41	11.7367
.(((..((.((.....)).))..)))	chr3:185542662-185542933(-)$1	1	127	153	12.1685
(((...(((((.....)).)))))))	chr9:115983798-115984060(+)$1	1	37	63	13.3695
((((..(((((.....)))))..)))	chrX:30233624-30233873(+)$1	1	50	76	11.6208
))))(((.(((.....)))..)))((	chr19:41859438-41859784(-)$1	1	122	148	13.3104
(..(.(..(((.....)))..).)..	chr14:100705155-100705451(+)$1	1	171	197	13.7544
..((.((.(((.....))).)).)).	chr19:1407575-1407876(+)$1	1	157	183	12.7843
(((((...(((......)))))))))	chr7:65338240-65338499(+)$1	1	111	137	9.8223
(((..(((..(.....)..))).)))	chr7:140402564-140402846(+)$1	1	32	58	13.5464
((((...((((.....))))..))))	chr16:66586429-66586752(+)$1	1	271	297	11.6236
(((.(.(((((.....))))).).))	chr12:120907161-120907575(-)$1	1	35	61	12.2840
)(((((((.((.....)).)))))))	chr17:73389682-73389947(-)$1	1	102	128	13.3631
((((((.((((.....)))).)))))	chr19:56632442-56632729(-)$1	1	45	71	11.5507
.(((((.((((.....)))).)))))	chr14:50359733-50359978(+)$1	1	132	158	11.5815
..(((((((((.....))))))))))	chr1:19949863-19950139(+)$1	1	210	236	12.0817
....(((((((.....)).)))))..	chr22:19419003-19419262(-)$1	1	13	39	11.9579
(((.(((((.(.....).))))).))	chr15:55681462-55681732(-)$1	1	94	120	12.0977
(.(((.(((((.....)).)))))).	chr6:43737961-43738178(+)$1	1	4	30	13.1526
(((.(((((((.....))))))).))	chr1:11979592-11979907(-)$1	1	136	162	14.3123

#PSSM
d : 0.19	c : 0.11	e : 0.09	= : 0.09	! : 0.09	f : 0.07	b : 0.05	: : 0.05	# : 0.05	g : 0.05	% : 0.01	E : 0.01	h : 0.01	C : 0.01	
c : 0.19	d : 0.15	= : 0.13	e : 0.09	f : 0.07	g : 0.07	! : 0.05	[ : 0.05	# : 0.03	E : 0.01	h : 0.01	C : 0.01	a : 0.01	: : 0.01	
c : 0.19	= : 0.13	d : 0.11	f : 0.11	i : 0.07	g : 0.07	# : 0.05	e : 0.05	[ : 0.03	! : 0.03	b : 0.03	h : 0.01	a : 0.01	
c : 0.15	= : 0.13	[ : 0.09	f : 0.09	i : 0.07	# : 0.07	b : 0.05	! : 0.05	g : 0.05	d : 0.05	a : 0.03	e : 0.03	h : 0.01	" : 0.01	
[ : 0.13	= : 0.13	g : 0.13	c : 0.11	i : 0.07	f : 0.07	! : 0.07	e : 0.07	# : 0.03	" : 0.03	h : 0.01	b : 0.01	d : 0.01	a : 0.01	
c : 0.13	= : 0.13	g : 0.11	i : 0.07	[ : 0.07	f : 0.07	" : 0.07	b : 0.05	! : 0.05	e : 0.05	# : 0.03	a : 0.03	h : 0.01	d : 0.01	
c : 0.17	= : 0.13	g : 0.11	e : 0.11	b : 0.09	i : 0.07	! : 0.05	" : 0.05	[ : 0.05	f : 0.03	h : 0.01	# : 0.01	d : 0.01	
= : 0.13	[ : 0.13	d : 0.13	c : 0.11	e : 0.11	g : 0.09	i : 0.07	b : 0.03	! : 0.03	" : 0.03	f : 0.03	a : 0.01	
c : 0.35	= : 0.13	d : 0.11	e : 0.11	i : 0.07	g : 0.07	! : 0.05	[ : 0.05	
c : 0.31	= : 0.13	d : 0.11	b : 0.11	i : 0.07	g : 0.07	e : 0.07	! : 0.05	[ : 0.01	
c : 0.31	= : 0.13	d : 0.11	b : 0.11	a : 0.07	i : 0.07	g : 0.07	e : 0.07	
n : 0.94	l : 0.03	o : 0.01	
n : 0.94	l : 0.03	o : 0.01	
n : 0.94	l : 0.03	o : 0.01	
n : 0.94	= : 0.03	o : 0.01	
n : 0.94	= : 0.03	o : 0.01	
c : 0.29	= : 0.13	d : 0.11	b : 0.11	a : 0.07	i : 0.07	g : 0.07	e : 0.07	o : 0.01	
c : 0.31	= : 0.13	d : 0.11	b : 0.11	i : 0.07	g : 0.07	e : 0.07	2 : 0.05	] : 0.01	
c : 0.31	= : 0.13	d : 0.11	e : 0.09	] : 0.09	2 : 0.07	i : 0.07	g : 0.07	
] : 0.21	= : 0.13	d : 0.11	e : 0.11	c : 0.09	g : 0.09	i : 0.07	2 : 0.05	b : 0.03	4 : 0.01	f : 0.01	
c : 0.15	= : 0.13	e : 0.13	g : 0.11	b : 0.09	i : 0.07	f : 0.05	] : 0.05	2 : 0.05	h : 0.01	3 : 0.01	4 : 0.01	a : 0.01	d : 0.01	
c : 0.19	= : 0.13	g : 0.13	i : 0.07	2 : 0.07	f : 0.07	e : 0.07	b : 0.05	3 : 0.03	] : 0.03	h : 0.01	4 : 0.01	d : 0.01	a : 0.01	
c : 0.17	= : 0.13	g : 0.13	] : 0.09	i : 0.07	f : 0.07	e : 0.07	2 : 0.05	3 : 0.03	a : 0.03	d : 0.03	h : 0.01	4 : 0.01	
] : 0.15	c : 0.15	= : 0.13	f : 0.09	i : 0.07	e : 0.07	g : 0.07	3 : 0.05	d : 0.05	a : 0.03	b : 0.03	h : 0.01	
c : 0.19	= : 0.13	d : 0.13	f : 0.09	i : 0.07	g : 0.07	] : 0.05	3 : 0.05	e : 0.05	b : 0.03	h : 0.01	a : 0.01	2 : 0.01	
c : 0.15	d : 0.13	e : 0.09	= : 0.09	f : 0.09	] : 0.09	g : 0.07	: : 0.05	2 : 0.05	3 : 0.05	h : 0.01	4 : 0.01	E : 0.01	

#score	663.4128216176925
#seq	51
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_UTR_m3_run1.txt

#BEAR
ff[bb[bb[=============ccc!!ee	chr16:3930019-3930293(-)$1	274	135	164	10.9537
diiiiiiiii!!ccc"""bb[dddd[ccc	chr21:38739715-38740013(+)$1	298	71	100	10.6801
eeee!!============$$$$$bbcccm	chr19:50815315-50815589(-)$1	274	142	171	10.5345
[ccc[ccc[a!!eeeee$$$$$dddd[bb	chr6:34857033-34857319(+)$1	286	97	126	10.2634
==========bb22ddddccc[dddd!!c	chr5:140048552-140048803(+)$1	251	94	123	8.9139
dddd[iiiiiiiiiccc!!ccc[ddddbb	chr12:132402728-132402988(+)$1	260	157	186	10.6128
888ggggggggggggggccc[dddd"""c	chr15:93426578-93426861(+)$1	283	39	68	8.6071
fff!!dddd[ggggggg[ccc[dddd[ff	chr7:5569457-5569690(-)$1	233	111	140	9.5169
eee!!bb==========[ccc[ccc!!cc	chr15:80215333-80215694(-)$1	361	209	238	12.0256
cc[a[bb[ggggggg!!bb[ccc!!eeee	chr22:39916704-39916968(+)$1	264	5	34	8.9934
!!bb!!bb[iiiiiiiii[eeeee[a!!f	chr19:16187665-16188004(+)$1	339	184	213	10.3595
ffff!!===========####dddd!!bb	chr1:27022731-27023035(+)$1	304	176	205	14.4393
ccc!!dddd[dddddddd"""ccc####b	chr3:128211720-128211972(+)$1	252	51	80	9.8489
!!a!!eeeee[hhhhhhhh!!dddd!!bb	chr5:133340077-133340381(-)$1	304	181	210	9.3004
hhhh!!ccc[bbccc"""a[ccc[bb[ff	chr19:1009843-1010112(-)$1	269	36	65	9.4766
ffffccc[dddd!!dddd"""========	chr1:67773347-67773598(+)$1	251	87	116	8.7195
==$$$$$==========####ccc!!ccc	chr7:100171080-100171332(-)$1	252	24	53	12.8043
============[ffffff!!eeeee[bb	chr5:138629672-138630031(+)$1	359	83	112	10.8547
]ccc===========lll===========	chr7:6523217-6523489(-)$1	272	242	271	10.4028
mmcccccc==========bbbb!!bb[bb	chr7:150777692-150777916(-)$1	224	82	111	9.7866
feeeee[ccc[ccc[eeeee!!dddd[bb	chr7:111202042-111202290(-)$1	248	122	151	8.6044
i[dddd[iiiiiiiiiccc!!dddd[eee	chr7:856338-856598(+)$1	260	28	57	10.2800
:ddddccc==========bbbb!!bb[bb	chr7:150777753-150777965(-)$1	212	131	160	9.5099
!!a"""===========ccc[dddd!!bb	chr19:39833017-39833291(+)$1	274	102	131	13.4187
ccc"""iiiiiiiiiccc[a[ccc[dddd	chr17:72768084-72768404(-)$1	320	92	121	10.9805
dddd"""iiiiiiiii!!a[bbccc"""c	chr9:131571341-131571608(+)$1	267	58	87	12.4276
ffffff==========="""ggggggga[	chr20:61492803-61493151(-)$1	348	76	105	11.5611
ffff"""a####eeeee"""bb[ccc"""	chr3:186502025-186502261(+)$1	236	32	61	10.4135
dd####===========[bb!!ccc####	chr1:2160042-2160342(+)$1	300	128	157	12.9714
cchhhhhhhhiiiiiiiiiggggggg[bb	chr16:720927-721170(+)$1	243	99	128	9.4204
fffff"""hhhhhhhh####ccc[a!!bb	chr7:6523125-6523410(-)$1	285	19	48	10.5083
ee[ccc####bb[dddd"""a"""bb!!g	chr7:77166712-77166972(+)$1	260	60	89	9.6546
gggeeeee"""ffffff####bb[bb[bb	chr19:14628490-14628763(-)$1	273	198	227	9.4419
ggggggg"""ccc!!bb####bb####ee	chr22:22275659-22275927(-)$1	268	38	67	10.3876
[a!!ddddccc==========bbbb!!bb	chr7:150777716-150777953(-)$1	237	116	145	10.2832
gg!!iiiiiiiiibbbb[bb[dddda!!d	chr11:65624898-65625164(-)$1	266	34	63	10.5154
ccc####ffffffdddd####eeeeeacc	chr7:25164631-25164914(-)$1	283	95	124	9.2492
=============ddddbb!!eeeee[bb	chr12:57824298-57824672(-)$1	374	272	301	11.2894
ffff"""a[=============="""fff	chr14:23791035-23791280(+)$1	245	108	137	11.5422
b!!iiiiiiiiihhhhhhhh[dddd"""f	chr6:53213199-53213511(-)$1	312	34	63	9.7616
ddd"""ccc[eeeee!!bb!!dddd"""e	chr17:17723230-17723495(-)$1	265	21	50	10.3486
ggggggggggg[eeeee[bb!!bba!!bb	chr2:232574432-232574666(+)$1	234	111	140	10.0933
==================[bb[bbbb[bb	chr6:111804051-111804309(-)$1	258	151	180	12.0169
ddggggggg[ccc[ccc####eeeee[a%	chr9:115095143-115095463(-)$1	320	191	220	10.1563
=====$$$$$ccc[a####bb[ccc!!cc	chr19:18548018-18548292(-)$1	274	6	35	10.1909
[dddd[dddd[dddd[a####dddd"""b	chr9:131183315-131183595(+)$1	280	28	57	10.2616
!!bb"""=========="""fffffflll	chr17:73823576-73823859(-)$1	283	154	183	10.4535
eeccc:iiiiiiiii[bb[ffffff!!cc	chr13:50571196-50571539(+)$1	343	48	77	9.0744
cc[a[============"""ccc[bb[bb	chr5:138629419-138629708(+)$1	289	80	109	13.7334
hhhhhhhhiiiiiiiii####ffffff[a	chr12:76477637-76477890(-)$1	253	64	93	9.8548
]ddddccc]aggggggg####eeeee[bb	chr16:2802728-2803017(+)$1	289	34	63	10.4623
!bb!!ccc"""ccc[a[ccc[dddd"""b	chr10:88853738-88853989(-)$1	251	40	69	10.7629
eeee####ggggggg!!ccc[ccc[a[cc	chr6:30584613-30584910(-)$1	297	51	80	10.8150

#otherMatches

#Seq PSSM
ggcggcggcggcggcggccgggggcgggc	chr16:3930019-3930293(-)$1	274	135	164	10.9537
gcgcggccaggagccggagcgccgggggc	chr21:38739715-38740013(+)$1	298	71	100	10.6801
UGGGGAGGGGAGGUCUGCAAAUCGUCCAA	chr19:50815315-50815589(-)$1	274	142	171	10.5345
GCUCGGCUGCAGCCUCGGGGAGGGGGUCC	chr6:34857033-34857319(+)$1	286	97	126	10.2634
UCUCUAUUUCCCUGCAGUGGGGGAAGAAG	chr5:140048552-140048803(+)$1	251	94	123	8.9139
CCUGCUGUGCUUCUCCUGUUGGAGCAUUG	chr12:132402728-132402988(+)$1	260	157	186	10.6128
UAGGGGGCACGCGGGGCCCCGCUGCAGAG	chr15:93426578-93426861(+)$1	283	39	68	8.6071
UGUGGCCGCUGCGUGCGCGCGCGCCGACC	chr7:5569457-5569690(-)$1	233	111	140	9.5169
GGUGAgcgccgggcgccgggcggggcugg	chr15:80215333-80215694(-)$1	361	209	238	12.0256
CAGCACCAGGCUCUGCAGCGGCAACCCCC	chr22:39916704-39916968(+)$1	264	5	34	8.9934
GGCUGGCGCCGGGGUCCCGGGCCGAGGGG	chr19:16187665-16188004(+)$1	339	184	213	10.3595
UCGCCCCCGCCGCCGCCAGCAGCCUGGGC	chr1:27022731-27023035(+)$1	304	176	205	14.4393
gcggacggggccUGGAGUAGAGCUGGGAG	chr3:128211720-128211972(+)$1	252	51	80	9.8489
AGCGGCCGGCGCGGGCCUGGCUGGUGAGC	chr5:133340077-133340381(-)$1	304	181	210	9.3004
UCUGCAGUGAACCGUCCUGAGGAUGGAGU	chr19:1009843-1010112(-)$1	269	36	65	9.4766
CGCCCCGGCCCGAUCCUCACUCGCCGCCA	chr1:67773347-67773598(+)$1	251	87	116	8.7195
CCAGGCCUUCCGGCGGGCAAGGACCAGGG	chr7:100171080-100171332(-)$1	252	24	53	12.8043
GCCCAGGGUGCGGCGGGAGAUUUUGGGUG	chr5:138629672-138630031(+)$1	359	83	112	10.8547
CCGGCCGGGAUCUCCCGUGGGGGUCCCGG	chr7:6523217-6523489(-)$1	272	242	271	10.4028
AACCCGGCCCCCGGGCCCCGAGACCGACU	chr7:150777692-150777916(-)$1	224	82	111	9.7866
CGCCCCAACAACGCGCCCUCUCCCAGUCC	chr7:111202042-111202290(-)$1	248	122	151	8.6044
gacgcgaggcgggggcccgggggccgggg	chr7:856338-856598(+)$1	260	28	57	10.2800
AACCCGGCCCCCGGGCCCCGAGACCGACU	chr7:150777753-150777965(-)$1	212	131	160	9.5099
aggagggaggggagcuugcgggcccgaga	chr19:39833017-39833291(+)$1	274	102	131	13.4187
GGUGAACUUUGUUCAGGUGUGAGGGUUGG	chr17:72768084-72768404(-)$1	320	92	121	10.9805
GCUUAAAGGCCCUGGGUCCUGCCAGUUCC	chr9:131571341-131571608(+)$1	267	58	87	12.4276
cgccgcccgccgcccgcgucgcccucgcc	chr20:61492803-61493151(-)$1	348	76	105	11.5611
ACCUUUAGGGAAGGCGCACAGUGUGGAUA	chr3:186502025-186502261(+)$1	236	32	61	10.4135
gggagcgggagcggccgggggagccggag	chr1:2160042-2160342(+)$1	300	128	157	12.9714
GGGGAGUGUGGGGAGGGGGCUGUGCCUGG	chr16:720927-721170(+)$1	243	99	128	9.4204
CCCGCUCUGCAGUCGGUCCCCGCGUGAAC	chr7:6523125-6523410(-)$1	285	19	48	10.5083
GGGGAACGAGCUGGGGAAGACGGAGCGGG	chr7:77166712-77166972(+)$1	260	60	89	9.6546
CCGGCUCAGCUGCGGGGCGAGGGGUUGUG	chr19:14628490-14628763(-)$1	273	198	227	9.4419
GCUCACUGAGGGCGUGCAAAGUUGAAAGU	chr22:22275659-22275927(-)$1	268	38	67	10.3876
GGGAACCCGGCCCCCGGGCCCCGAGACCG	chr7:150777716-150777953(-)$1	237	116	145	10.2832
CUGCGCGUCACCCUCCCUCGGCAGCCGGG	chr11:65624898-65625164(-)$1	266	34	63	10.5154
GGUGAGAGCGGGUCGCGGAGGCCGCACCU	chr7:25164631-25164914(-)$1	283	95	124	9.2492
UUCCUCGCGCCCGGCAGCCGGUCCCGGGG	chr12:57824298-57824672(-)$1	374	272	301	11.2894
UGGCUGGGGCCGGGUCGGGCCGGGGAUGG	chr14:23791035-23791280(+)$1	245	108	137	11.5422
CAACCCGCGCUCCGCCCGCGGCCUCCAGC	chr6:53213199-53213511(-)$1	312	34	63	9.7616
CCCAGCCCCACCGCAGUUCAGCUCCACCC	chr17:17723230-17723495(-)$1	265	21	50	10.3486
CCUGCAGGGAUUGGCGCGAGUCACCUUGG	chr2:232574432-232574666(+)$1	234	111	140	10.0933
gccgccgccgcugcugcugccgcugccgg	chr6:111804051-111804309(-)$1	258	151	180	12.0169
GUCGGUACACGUCUGGGCGGCGACCUGGU	chr9:115095143-115095463(-)$1	320	191	220	10.1563
GGGGCGAGGGGCUGCAGGGGCGAGGGACC	chr19:18548018-18548292(-)$1	274	6	35	10.1909
UGGCCCUCUGGUGAGAGACCCGGGCAUUG	chr9:131183315-131183595(+)$1	280	28	57	10.2616
UCUGCCUCCUGGCCUUCCUGUUCCAGCCA	chr17:73823576-73823859(-)$1	283	154	183	10.4535
GCGGCCUUUCCCACUAGCCGGAGGUCGGA	chr13:50571196-50571539(+)$1	343	48	77	9.0744
CGUGAAGCGGGUAAGAGUCGGGGUCGGGU	chr5:138629419-138629708(+)$1	289	80	109	13.7334
GUCCCCGAGGCGGGGAGGGGGCGGGGGAG	chr12:76477637-76477890(-)$1	253	64	93	9.8548
GGCCCCAGGCCCGAGGGACUCGGGAGCUC	chr16:2802728-2803017(+)$1	289	34	63	10.4623
CACCCCGCCUCGGAUGUGGCCGGCUCUGU	chr10:88853738-88853989(-)$1	251	40	69	10.7629
GGGACAACAAAGAUGGCAUUUGUGAGUGU	chr6:30584613-30584910(-)$1	297	51	80	10.8150

#DB
((.((.((.((((((((((((((((..((	chr16:3930019-3930293(-)$1	1	135	164	10.9537
)(((((((((..(((...((.((((.(((	chr21:38739715-38740013(+)$1	1	71	100	10.6801
((((..((((((((((((.....(((((.	chr19:50815315-50815589(-)$1	1	142	171	10.5345
.(((.(((.(..(((((.....((((.((	chr6:34857033-34857319(+)$1	1	97	126	10.2634
))))))))))))..))))(((.((((..(	chr5:140048552-140048803(+)$1	1	94	123	8.9139
((((.((((((((((((..(((.((((((	chr12:132402728-132402988(+)$1	1	157	186	10.6128
...)))))))((((((((((.((((...(	chr15:93426578-93426861(+)$1	1	39	68	8.6071
(((..((((.(((((((.(((.((((.((	chr7:5569457-5569690(-)$1	1	111	140	9.5169
(((..((((((((((((.(((.(((..((	chr15:80215333-80215694(-)$1	1	209	238	12.0256
((.(.((.(((((((..((.(((..((((	chr22:39916704-39916968(+)$1	1	5	34	8.9934
..((..((.(((((((((.(((((.(..(	chr19:16187665-16188004(+)$1	1	184	213	10.3595
((((..(((((((((((....((((..((	chr1:27022731-27023035(+)$1	1	176	205	14.4393
(((..((((.((((((((...(((....(	chr3:128211720-128211972(+)$1	1	51	80	9.8489
..(..(((((.((((((((..((((..((	chr5:133340077-133340381(-)$1	1	181	210	9.3004
((((..(((.(((((...(.(((.((.((	chr19:1009843-1010112(-)$1	1	36	65	9.4766
(((((((.((((..((((...((((((((	chr1:67773347-67773598(+)$1	1	87	116	8.7195
((.....((((((((((....(((..(((	chr7:100171080-100171332(-)$1	1	24	53	12.8043
((((((((((((.((((((..(((((.((	chr5:138629672-138630031(+)$1	1	83	112	10.8547
.)))(((((((((((...)))))))))))	chr7:6523217-6523489(-)$1	1	242	271	10.4028
..)))(((((((((((((((((..((.((	chr7:150777692-150777916(-)$1	1	82	111	9.7866
)(((((.(((.(((.(((((..((((.((	chr7:111202042-111202290(-)$1	1	122	151	8.6044
(.((((.((((((((((((..((((.(((	chr7:856338-856598(+)$1	1	28	57	10.2800
.(((((((((((((((((((((..((.((	chr7:150777753-150777965(-)$1	1	131	160	9.5099
..(...((((((((((((((.((((..((	chr19:39833017-39833291(+)$1	1	102	131	13.4187
(((...((((((((((((.(.(((.((((	chr17:72768084-72768404(-)$1	1	92	121	10.9805
((((...(((((((((..(.(((((...(	chr9:131571341-131571608(+)$1	1	58	87	12.4276
(((((((((((((((((...((((((((.	chr20:61492803-61493151(-)$1	1	76	105	11.5611
((((...(....(((((...((.(((...	chr3:186502025-186502261(+)$1	1	32	61	10.4135
((....(((((((((((.((..(((....	chr1:2160042-2160342(+)$1	1	128	157	12.9714
((((((((((((((((((((((((((.((	chr16:720927-721170(+)$1	1	99	128	9.4204
(((((...((((((((....(((.(..((	chr7:6523125-6523410(-)$1	1	19	48	10.5083
((.(((....((.((((...(...((..(	chr7:77166712-77166972(+)$1	1	60	89	9.6546
((((((((...((((((....((.((.((	chr19:14628490-14628763(-)$1	1	198	227	9.4419
(((((((...(((..((....((....((	chr22:22275659-22275927(-)$1	1	38	67	10.3876
.(..(((((((((((((((((((((..((	chr7:150777716-150777953(-)$1	1	116	145	10.2832
((..(((((((((((((.((.(((((..(	chr11:65624898-65625164(-)$1	1	34	63	10.5154
(((....((((((((((....((((((((	chr7:25164631-25164914(-)$1	1	95	124	9.2492
)))))))))))))((((((..(((((.((	chr12:57824298-57824672(-)$1	1	272	301	11.2894
((((...(.((((((((((((((...(((	chr14:23791035-23791280(+)$1	1	108	137	11.5422
(..(((((((((((((((((.((((...(	chr6:53213199-53213511(-)$1	1	34	63	9.7616
(((...(((.(((((..((..((((...(	chr17:17723230-17723495(-)$1	1	21	50	10.3486
(((((((((((.(((((.((..(((..((	chr2:232574432-232574666(+)$1	1	111	140	10.0933
((((((((((((((((((.((.((((.((	chr6:111804051-111804309(-)$1	1	151	180	12.0169
(((((((((.(((.(((....(((((.(.	chr9:115095143-115095463(-)$1	1	191	220	10.1563
(((((.....(((.(....((.(((..((	chr19:18548018-18548292(-)$1	1	6	35	10.1909
.((((.((((.((((.(....((((...(	chr9:131183315-131183595(+)$1	1	28	57	10.2616
..((...((((((((((...((((((...	chr17:73823576-73823859(-)$1	1	154	183	10.4535
))))).(((((((((.((.((((((..((	chr13:50571196-50571539(+)$1	1	48	77	9.0744
((.(.((((((((((((...(((.((.((	chr5:138629419-138629708(+)$1	1	80	109	13.7334
(((((((((((((((((....((((((.(	chr12:76477637-76477890(-)$1	1	64	93	9.8548
.))))))).)(((((((....(((((.((	chr16:2802728-2803017(+)$1	1	34	63	10.4623
.((..(((...(((.(.(((.((((...(	chr10:88853738-88853989(-)$1	1	40	69	10.7629
((((....(((((((..(((.(((.(.((	chr6:30584613-30584910(-)$1	1	51	80	10.8150

#PSSM
f : 0.16	d : 0.11	= : 0.11	c : 0.11	e : 0.09	! : 0.09	g : 0.07	[ : 0.05	h : 0.03	] : 0.03	8 : 0.01	m : 0.01	i : 0.01	: : 0.01	b : 0.01	
f : 0.15	c : 0.15	d : 0.15	e : 0.11	= : 0.11	! : 0.09	g : 0.07	h : 0.03	i : 0.01	8 : 0.01	m : 0.01	[ : 0.01	a : 0.01	b : 0.01	
c : 0.13	d : 0.13	f : 0.13	= : 0.09	[ : 0.07	e : 0.07	g : 0.07	b : 0.05	h : 0.05	! : 0.05	a : 0.03	i : 0.01	8 : 0.01	$ : 0.01	# : 0.01	
! : 0.13	d : 0.11	f : 0.11	c : 0.09	= : 0.09	e : 0.07	g : 0.07	b : 0.05	h : 0.05	" : 0.05	i : 0.03	a : 0.03	# : 0.03	$ : 0.01	
! : 0.16	" : 0.13	= : 0.11	d : 0.09	[ : 0.07	g : 0.07	c : 0.07	i : 0.05	# : 0.05	e : 0.03	f : 0.03	h : 0.03	b : 0.01	$ : 0.01	
" : 0.15	c : 0.13	= : 0.11	i : 0.07	! : 0.07	g : 0.07	d : 0.07	e : 0.05	# : 0.05	[ : 0.03	b : 0.03	$ : 0.03	h : 0.03	f : 0.01	: : 0.01	
= : 0.20	c : 0.15	i : 0.11	" : 0.09	b : 0.07	g : 0.07	d : 0.07	# : 0.05	e : 0.03	$ : 0.03	[ : 0.03	h : 0.03	
= : 0.26	i : 0.15	c : 0.15	d : 0.07	g : 0.05	b : 0.03	[ : 0.03	e : 0.03	a : 0.03	h : 0.03	" : 0.03	# : 0.03	f : 0.01	$ : 0.01	
= : 0.30	i : 0.16	g : 0.09	[ : 0.07	d : 0.07	c : 0.07	" : 0.05	# : 0.03	h : 0.03	e : 0.01	f : 0.01	$ : 0.01	] : 0.01	
= : 0.33	i : 0.18	[ : 0.09	g : 0.07	" : 0.05	a : 0.03	d : 0.03	c : 0.03	# : 0.03	h : 0.03	e : 0.01	f : 0.01	$ : 0.01	
= : 0.32	i : 0.18	g : 0.11	c : 0.07	b : 0.05	[ : 0.05	! : 0.03	d : 0.03	" : 0.03	# : 0.01	h : 0.01	f : 0.01	e : 0.01	
= : 0.33	i : 0.18	g : 0.09	c : 0.09	b : 0.05	d : 0.05	! : 0.03	h : 0.03	f : 0.03	# : 0.01	e : 0.01	[ : 0.01	
= : 0.32	i : 0.16	c : 0.13	g : 0.09	e : 0.07	h : 0.05	d : 0.03	[ : 0.03	f : 0.03	2 : 0.01	! : 0.01	
= : 0.30	i : 0.15	g : 0.09	d : 0.09	c : 0.07	e : 0.07	h : 0.05	! : 0.03	f : 0.03	[ : 0.03	2 : 0.01	b : 0.01	
= : 0.30	d : 0.13	i : 0.13	g : 0.09	c : 0.07	e : 0.07	h : 0.05	f : 0.03	[ : 0.03	! : 0.01	b : 0.01	a : 0.01	
= : 0.28	d : 0.11	i : 0.09	e : 0.07	c : 0.05	g : 0.05	! : 0.05	h : 0.05	" : 0.03	f : 0.03	b : 0.03	[ : 0.03	l : 0.01	# : 0.01	a : 0.01	
= : 0.28	d : 0.11	e : 0.07	c : 0.07	! : 0.07	g : 0.05	i : 0.05	b : 0.05	" : 0.03	h : 0.03	f : 0.03	# : 0.03	l : 0.01	a : 0.01	[ : 0.01	
# : 0.20	= : 0.13	" : 0.13	c : 0.11	[ : 0.09	b : 0.07	d : 0.05	! : 0.03	i : 0.03	h : 0.03	$ : 0.01	f : 0.01	l : 0.01	e : 0.01	
# : 0.20	b : 0.16	c : 0.15	" : 0.13	= : 0.07	[ : 0.07	$ : 0.03	h : 0.03	a : 0.03	! : 0.01	f : 0.01	e : 0.01	i : 0.01	
# : 0.18	b : 0.15	c : 0.15	" : 0.13	! : 0.09	= : 0.07	[ : 0.05	$ : 0.03	e : 0.03	a : 0.01	g : 0.01	h : 0.01	f : 0.01	
# : 0.16	[ : 0.15	c : 0.15	! : 0.15	b : 0.11	= : 0.07	$ : 0.03	" : 0.03	g : 0.03	f : 0.03	e : 0.01	a : 0.01	
d : 0.20	c : 0.16	b : 0.13	e : 0.11	[ : 0.09	= : 0.07	! : 0.05	f : 0.05	$ : 0.03	g : 0.03	" : 0.01	
d : 0.28	c : 0.24	e : 0.11	b : 0.09	= : 0.05	f : 0.05	[ : 0.03	! : 0.03	g : 0.03	$ : 0.01	" : 0.01	
d : 0.30	c : 0.18	e : 0.11	b : 0.07	[ : 0.07	! : 0.05	f : 0.05	= : 0.03	g : 0.03	" : 0.03	# : 0.01	
d : 0.30	b : 0.16	c : 0.11	e : 0.09	[ : 0.05	f : 0.05	! : 0.03	# : 0.03	= : 0.03	g : 0.03	a : 0.03	" : 0.01	
! : 0.20	" : 0.13	b : 0.13	d : 0.11	e : 0.11	a : 0.05	# : 0.05	[ : 0.03	c : 0.03	= : 0.03	g : 0.03	f : 0.03	
[ : 0.28	! : 0.26	" : 0.13	c : 0.05	# : 0.05	d : 0.03	e : 0.03	= : 0.03	f : 0.03	g : 0.01	a : 0.01	l : 0.01	
b : 0.33	c : 0.15	" : 0.13	e : 0.07	! : 0.07	f : 0.05	# : 0.03	= : 0.03	a : 0.03	d : 0.01	l : 0.01	[ : 0.01	
b : 0.39	c : 0.18	e : 0.09	f : 0.09	= : 0.03	d : 0.03	m : 0.01	[ : 0.01	" : 0.01	# : 0.01	g : 0.01	% : 0.01	l : 0.01	a : 0.01	

#score	557.5415877708733
#seq	53
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_CDS_m3_run1.txt

#BEAR
eeeee[ddddmmmmddddeeeee	chr17:26910559-26910868(-)$1	309	42	65	9.4409
dd[ccc[ddddlllddddccc33	chr4:77957780-77958066(+)$1	286	136	159	7.9478
"""eeeeebbmmmmbb4444eee	chr2:181925423-181925640(+)$1	217	19	42	9.5247
bb[gggggggmmmmggggggg]b	chr6:166742899-166743177(-)$1	278	12	35	8.6789
[ccc"""ddddllldddd333cc	chr7:127669188-127669430(+)$1	242	173	196	9.7229
eeeee"""bbmmmmbb4444eee	chr3:129151198-129151472(-)$1	274	73	96	10.3601
==========lll==========	chr12:12976136-12976422(+)$1	286	112	135	8.2253
ccc[ccc[bbmmmmbbccc]ccc	chr1:236703866-236704131(+)$1	265	21	44	9.4242
[ccc[ddddmmmmdddd22ccc]	chr3:15073859-15074117(+)$1	258	178	201	8.5065
cc[ccc!!bbmmmmbb]ccc]cc	chr18:12986729-12986968(+)$1	239	171	194	9.6977
gccc!!ddddmmmmddddccc:D	chr8:95782675-95783037(+)$1	362	225	248	8.4357
ddd[a!!cccmmmmccc22a]dd	chr2:232574753-232574995(+)$1	242	105	128	10.9993
ffff!!ddddmmmmdddd]ffff	chr6:105733263-105733536(-)$1	273	238	261	10.4262
d[bb"""cccmmmmccc333bb]	chr7:128633745-128633985(-)$1	240	87	110	11.4453
c!!ccc[cccmmmmcccccc]cc	chr2:223773499-223773769(+)$1	270	180	203	10.8883
ffffff!!ccclllccc]fffff	chr1:160247775-160248082(-)$1	307	118	141	8.2923
d!!gggggggmmmmggggggg]d	chr19:49356973-49357239(-)$1	266	99	122	9.2229
:eeeee[cccmmmmccc]eeeee	chr5:81572036-81572290(-)$1	254	152	175	9.3004
"bb####cccmmmmccc4444bb	chr5:118469063-118469336(+)$1	273	175	198	10.9571
""dddd[cccmmmmccc]dddd3	chr2:101905213-101905550(-)$1	337	250	273	9.5769
cc[gggggggmmmmgggggggcc	chr10:73122155-73122397(+)$1	242	155	178	9.2778
!ccc"""cccmmmmccc]cccff	chr4:122737813-122738092(-)$1	279	238	261	11.8210
:ccc!!ddddmmmmdddd22ccc	chr1:155883834-155884092(-)$1	258	106	129	9.9708
ee[ccc[cccmmmmccc]ccc]e	chr11:6569132-6569401(+)$1	269	130	153	11.2604
!dddd[ddddmmmmdddd333dd	chr7:151851005-151851279(-)$1	274	31	54	10.5356
dddd"""cccmmmmccc333ddd	chr2:131904236-131904487(+)$1	251	181	204	11.6499
iiiiiiicccmmmmccc]iiiii	chr10:98287740-98288010(-)$1	270	37	60	10.8078
ggggg[ddddllldddd]ggggg	chr1:53692632-53692885(-)$1	253	56	79	8.2232
!bb"""ddddmmmmdddd4444b	chr3:32533143-32533396(-)$1	253	115	138	10.3960
b!!ccc!!bbmmmmbb22ccc22	chr11:47774328-47774585(-)$1	257	153	176	9.1647
fffff[ddddmmmmdddd22fff	chr6:136596699-136597004(-)$1	305	185	208	10.4565
eeeeea[cccmmmmccc333a]e	chr19:1407682-1407988(+)$1	306	135	158	11.9898
ggggggg[bbmmmmbb22ggggg	chr11:66393828-66394086(+)$1	258	133	156	9.2983
eeeee!!cccmmmmccc]eeeee	chr3:183705385-183705637(-)$1	252	113	136	10.6579
"""a!!ddddmmmmdddd22a]h	chrX:13337534-13337781(+)$1	247	120	143	10.6591
ffffff[cccmmmmccc333fff	chr10:103572497-103572727(-)$1	230	119	142	11.9140
ffff"""cccnnnnnccc333ff	chrX:118923853-118924074(-)$1	221	158	181	8.5827
:ffffffcccmmmmccc333fff	chr5:68470119-68470351(+)$1	232	70	93	10.5590
eeee!!ddddmmmmdddd333ee	chr19:1416354-1416571(+)$1	217	66	89	11.2931
eee####cccmmmmccc333eee	chr5:158589880-158590130(-)$1	250	125	148	12.1302
!gggggggbbmmmmbb22ggggg	chr3:150263387-150263606(-)$1	219	128	151	9.3979
fffff"""bbmmmmbb]ffffff	chr1:53333195-53333443(+)$1	248	164	187	9.2051
''eeeeecccmmmmccc4444ee	chr6:116968488-116968747(-)$1	259	136	159	9.6944
ffffff[cccmmmmccc333fff	chr10:103572527-103572747(-)$1	220	139	162	11.9140
eeeebb[cccmmmmccc]bb333	chr17:57232276-57232547(-)$1	271	155	178	9.8631
f[cccddddmmmmdddd]ccc]f	chr14:54896877-54897089(-)$1	212	96	119	8.3037
!ffffff[bbmmmmbb333ffff	chr22:24967878-24968196(+)$1	318	198	221	9.8940
cc[bb[ddddmmmmdddd]bb]c	chr12:111160076-111160352(-)$1	276	109	132	9.5483
ffffff[cccmmmmccc333fff	chr10:103572547-103572781(-)$1	234	173	196	11.9140
ccc####ddddllldddd4444c	chr5:179044531-179044742(-)$1	211	184	207	8.9446
d[ccc[ddddmmmmddddccc]d	chr9:97209109-97209320(+)$1	211	4	27	10.2737

#otherMatches

#Seq PSSM
UUUCUCAGGAACACUUCUAGAAG	chr17:26910559-26910868(-)$1	309	42	65	9.4409
UCACAGUAGUCCUUGGCUCUGCA	chr4:77957780-77958066(+)$1	286	136	159	7.9478
AUCUGUCUGGACAUCCUUAAAGA	chr2:181925423-181925640(+)$1	217	19	42	9.5247
UGGUAUUGUAUUACUGCAGUAGC	chr6:166742899-166743177(-)$1	278	12	35	8.6789
AGCCGUGCUCACAUUGAGGUAGG	chr7:127669188-127669430(+)$1	242	173	196	9.7229
GGUAAAUAUGGCAACGACUCUUA	chr3:129151198-129151472(-)$1	274	73	96	10.3601
UCAAGGUAAAAUGUUUACUUUGA	chr12:12976136-12976422(+)$1	286	112	135	8.2253
CUGCUCUAUGGCCACAGGAUCGG	chr1:236703866-236704131(+)$1	265	21	44	9.4242
CGGGCAGGAGCCUUCCUCUCCCU	chr3:15073859-15074117(+)$1	258	178	201	8.5065
AGAUGGUCCAGUUAUGCCCAGCU	chr18:12986729-12986968(+)$1	239	171	194	9.6977
ggcucaccugaguucaggaguuu	chr8:95782675-95783037(+)$1	362	225	248	8.4357
GGCGACCUCCCGUGGGACUUGGC	chr2:232574753-232574995(+)$1	242	105	128	10.9993
CUUCCUGUUUGAAUGAGCUGAAG	chr6:105733263-105733536(-)$1	273	238	261	10.4262
UGAUUUUCUUGAUAGGGUCUAUG	chr7:128633745-128633985(-)$1	240	87	110	11.4453
CCUGAUUCUGCAUACAGAUCUGU	chr2:223773499-223773769(+)$1	270	180	203	10.8883
CUGUGGCUCCCAGUGGGUCUACG	chr1:160247775-160248082(-)$1	307	118	141	8.2923
CUUGGGGCUAGGCAUGGCUUCUG	chr19:49356973-49357239(-)$1	266	99	122	9.2229
CUCACAUGAAAGUAUUUUUGUGA	chr5:81572036-81572290(-)$1	254	152	175	9.3004
CUCUCUCUGUAAAAGCAUAAUGA	chr5:118469063-118469336(+)$1	273	175	198	10.9571
UUGGAUUUUAAAUAUAAUAUCUU	chr2:101905213-101905550(-)$1	337	250	273	9.5769
CUUGGGCUUAACACUGGGCUCAG	chr10:73122155-73122397(+)$1	242	155	178	9.2778
UUAGUUUUCCAGUAGGAUCUAAA	chr4:122737813-122738092(-)$1	279	238	261	11.8210
UGGAGUUUGGGAUACCAAUAUCC	chr1:155883834-155884092(-)$1	258	106	129	9.9708
CCCUCCAGGUACCUACCAGGAUG	chr11:6569132-6569401(+)$1	269	130	153	11.2604
UUUCUCUCUUUUUAAAGGUUCAG	chr7:151851005-151851279(-)$1	274	31	54	10.5356
UGUUUGUGACAAAAGUUUUUAAU	chr2:131904236-131904487(+)$1	251	181	204	11.6499
UAAAGACUGGAAACCUGUGUCUU	chr10:98287740-98288010(-)$1	270	37	60	10.8078
UUUUGUAUUUUAGGGAUCCAGAA	chr1:53692632-53692885(-)$1	253	56	79	8.2232
UUCUUCUGAGUCUCCUUAUACUG	chr3:32533143-32533396(-)$1	253	115	138	10.3960
AAUCCUUAAAGGGAUUCUAGGCA	chr11:47774328-47774585(-)$1	257	153	176	9.1647
ACAGGCUGCUUGCUAGUACACUU	chr6:136596699-136597004(-)$1	305	185	208	10.4565
CGGGCCUGCGUCUccgccccgag	chr19:1407682-1407988(+)$1	306	135	158	11.9898
CUCUGAUUACCGCCGUUUAUCAG	chr11:66393828-66394086(+)$1	258	133	156	9.2983
GGGGCCCGGCCACGGCCAGCUCU	chr3:183705385-183705637(-)$1	252	113	136	10.6579
CAAGUUAAACCAGUGUUUUCCAA	chrX:13337534-13337781(+)$1	247	120	143	10.6591
UCAUGACCAUAUGUGUGAUAUCA	chr10:103572497-103572727(-)$1	230	119	142	11.9140
GUCCCAUUCCCCAGUGGAUUCGG	chrX:118923853-118924074(-)$1	221	158	181	8.5827
AGGAGACCAUGUACAUGACUGUC	chr5:68470119-68470351(+)$1	232	70	93	10.5590
GGACUUCAUUUCUGAAUGCGUGU	chr19:1416354-1416571(+)$1	217	66	89	11.2931
CAGUUUUUCCACAUGGAUUUUUG	chr5:158589880-158590130(-)$1	250	125	148	12.1302
GGGGGCUCCCAUCAGGUAGAGUC	chr3:150263387-150263606(-)$1	219	128	151	9.3979
GGUUCCAUAGUUCACUUGAGCCU	chr1:53333195-53333443(+)$1	248	164	187	9.2051
AUAUAACUCAUAUUUGACAAUGU	chr6:116968488-116968747(-)$1	259	136	159	9.6944
UCAUGACCAUAUGUGUGAUAUCA	chr10:103572527-103572747(-)$1	220	139	162	11.9140
GAGGCUGGACCAGAGUCGAGUUC	chr17:57232276-57232547(-)$1	271	155	178	9.8631
UUACUACCUAUAUGGGUAAGUUG	chr14:54896877-54897089(-)$1	212	96	119	8.3037
AAAUAAAUCUGGGGGGUUuuuug	chr22:24967878-24968196(+)$1	318	198	221	9.8940
AGCAUGUGUGUGAGCACAGAUUC	chr12:111160076-111160352(-)$1	276	109	132	9.5483
UCAUGACCAUAUGUGUGAUAUCA	chr10:103572547-103572781(-)$1	234	173	196	11.9140
UGAAGAUGCUGUGGCAGCUAUGU	chr5:179044531-179044742(-)$1	211	184	207	8.9446
AAAGUUGGAAAAGAUUCUACUGU	chr9:97209109-97209320(+)$1	211	4	27	10.2737

#DB
(((((.((((....)))))))))	chr17:26910559-26910868(-)$1	1	42	65	9.4409
((.(((.((((...)))))))..	chr4:77957780-77958066(+)$1	1	136	159	7.9478
...(((((((....))....)))	chr2:181925423-181925640(+)$1	1	19	42	9.5247
((.(((((((....))))))).)	chr6:166742899-166743177(-)$1	1	12	35	8.6789
.(((...((((...))))...))	chr7:127669188-127669430(+)$1	1	173	196	9.7229
(((((...((....))....)))	chr3:129151198-129151472(-)$1	1	73	96	10.3601
((((((((((...))))))))))	chr12:12976136-12976422(+)$1	1	112	135	8.2253
(((.(((.((....))))).)))	chr1:236703866-236704131(+)$1	1	21	44	9.4242
.(((.((((....))))..))).	chr3:15073859-15074117(+)$1	1	178	201	8.5065
((.(((..((....)).))).))	chr18:12986729-12986968(+)$1	1	171	194	9.6977
)(((..((((....))))))).)	chr8:95782675-95783037(+)$1	1	225	248	8.4357
(((.(..(((....)))..).))	chr2:232574753-232574995(+)$1	1	105	128	10.9993
((((..((((....)))).))))	chr6:105733263-105733536(-)$1	1	238	261	10.4262
(.((...(((....)))...)).	chr7:128633745-128633985(-)$1	1	87	110	11.4453
(..(((.(((....)))))).))	chr2:223773499-223773769(+)$1	1	180	203	10.8883
((((((..(((...))).)))))	chr1:160247775-160248082(-)$1	1	118	141	8.2923
(..(((((((....))))))).)	chr19:49356973-49357239(-)$1	1	99	122	9.2229
.(((((.(((....))).)))))	chr5:81572036-81572290(-)$1	1	152	175	9.3004
.((....(((....)))....))	chr5:118469063-118469336(+)$1	1	175	198	10.9571
..((((.(((....))).)))).	chr2:101905213-101905550(-)$1	1	250	273	9.5769
((.(((((((....)))))))))	chr10:73122155-73122397(+)$1	1	155	178	9.2778
.(((...(((....))).)))))	chr4:122737813-122738092(-)$1	1	238	261	11.8210
.(((..((((....))))..)))	chr1:155883834-155884092(-)$1	1	106	129	9.9708
((.(((.(((....))).))).)	chr11:6569132-6569401(+)$1	1	130	153	11.2604
.((((.((((....))))...))	chr7:151851005-151851279(-)$1	1	31	54	10.5356
((((...(((....)))...)))	chr2:131904236-131904487(+)$1	1	181	204	11.6499
((((((((((....))).)))))	chr10:98287740-98288010(-)$1	1	37	60	10.8078
(((((.((((...)))).)))))	chr1:53692632-53692885(-)$1	1	56	79	8.2232
.((...((((....))))....)	chr3:32533143-32533396(-)$1	1	115	138	10.3960
(..(((..((....))..)))..	chr11:47774328-47774585(-)$1	1	153	176	9.1647
(((((.((((....))))..)))	chr6:136596699-136597004(-)$1	1	185	208	10.4565
((((((.(((....)))...).)	chr19:1407682-1407988(+)$1	1	135	158	11.9898
(((((((.((....))..)))))	chr11:66393828-66394086(+)$1	1	133	156	9.2983
(((((..(((....))).)))))	chr3:183705385-183705637(-)$1	1	113	136	10.6579
...(..((((....))))..).)	chrX:13337534-13337781(+)$1	1	120	143	10.6591
((((((.(((....)))...)))	chr10:103572497-103572727(-)$1	1	119	142	11.9140
((((...(((.....)))...))	chrX:118923853-118924074(-)$1	1	158	181	8.5827
.(((((((((....)))...)))	chr5:68470119-68470351(+)$1	1	70	93	10.5590
((((..((((....))))...))	chr19:1416354-1416571(+)$1	1	66	89	11.2931
(((....(((....)))...)))	chr5:158589880-158590130(-)$1	1	125	148	12.1302
.(((((((((....))..)))))	chr3:150263387-150263606(-)$1	1	128	151	9.3979
(((((...((....)).))))))	chr1:53333195-53333443(+)$1	1	164	187	9.2051
..((((((((....)))....))	chr6:116968488-116968747(-)$1	1	136	159	9.6944
((((((.(((....)))...)))	chr10:103572527-103572747(-)$1	1	139	162	11.9140
((((((.(((....))).))...	chr17:57232276-57232547(-)$1	1	155	178	9.8631
(.(((((((....)))).))).)	chr14:54896877-54897089(-)$1	1	96	119	8.3037
.((((((.((....))...))))	chr22:24967878-24968196(+)$1	1	198	221	9.8940
((.((.((((....)))).)).)	chr12:111160076-111160352(-)$1	1	109	132	9.5483
((((((.(((....)))...)))	chr10:103572547-103572781(-)$1	1	173	196	11.9140
(((....((((...))))....)	chr5:179044531-179044742(-)$1	1	184	207	8.9446
(.(((.((((....))))))).)	chr9:97209109-97209320(+)$1	1	4	27	10.2737

#PSSM
f : 0.17	e : 0.15	d : 0.11	c : 0.11	! : 0.09	" : 0.07	g : 0.05	: : 0.05	b : 0.03	[ : 0.03	= : 0.01	i : 0.01	' : 0.01	
c : 0.19	f : 0.19	e : 0.17	d : 0.07	" : 0.05	b : 0.05	[ : 0.05	! : 0.05	g : 0.05	= : 0.01	i : 0.01	' : 0.01	
f : 0.19	e : 0.17	c : 0.17	[ : 0.11	d : 0.07	b : 0.05	! : 0.05	g : 0.05	" : 0.03	= : 0.01	i : 0.01	
c : 0.23	f : 0.19	e : 0.17	g : 0.11	# : 0.05	d : 0.05	[ : 0.03	b : 0.03	= : 0.01	i : 0.01	" : 0.01	a : 0.01	
c : 0.15	f : 0.15	e : 0.13	g : 0.11	" : 0.11	! : 0.09	# : 0.05	d : 0.03	b : 0.03	= : 0.01	[ : 0.01	a : 0.01	i : 0.01	
" : 0.15	! : 0.13	[ : 0.11	c : 0.11	f : 0.11	g : 0.09	e : 0.05	d : 0.05	# : 0.05	= : 0.01	i : 0.01	a : 0.01	b : 0.01	
d : 0.27	[ : 0.19	" : 0.13	g : 0.09	! : 0.09	# : 0.05	e : 0.03	f : 0.03	= : 0.01	c : 0.01	i : 0.01	
c : 0.39	d : 0.33	g : 0.07	[ : 0.05	! : 0.05	" : 0.03	e : 0.01	= : 0.01	
c : 0.41	d : 0.33	b : 0.17	g : 0.05	= : 0.01	
c : 0.41	d : 0.29	b : 0.17	g : 0.05	m : 0.03	= : 0.01	
m : 0.86	d : 0.05	l : 0.03	c : 0.01	n : 0.01	
m : 0.86	l : 0.11	n : 0.01	
m : 0.86	l : 0.11	n : 0.01	
m : 0.82	l : 0.07	d : 0.05	= : 0.01	n : 0.01	
c : 0.39	d : 0.33	b : 0.17	g : 0.05	= : 0.01	n : 0.01	
c : 0.41	d : 0.33	b : 0.17	g : 0.05	= : 0.01	
c : 0.43	d : 0.33	g : 0.05	2 : 0.05	4 : 0.03	] : 0.03	= : 0.01	3 : 0.01	
d : 0.27	] : 0.19	3 : 0.17	2 : 0.09	4 : 0.07	c : 0.07	g : 0.05	= : 0.01	f : 0.01	
3 : 0.25	c : 0.19	4 : 0.11	g : 0.11	2 : 0.09	e : 0.05	] : 0.03	f : 0.03	= : 0.01	d : 0.01	i : 0.01	b : 0.01	
3 : 0.23	c : 0.19	4 : 0.11	g : 0.11	f : 0.07	e : 0.05	2 : 0.05	b : 0.03	= : 0.01	] : 0.01	a : 0.01	d : 0.01	i : 0.01	
c : 0.19	f : 0.17	e : 0.11	g : 0.11	3 : 0.09	4 : 0.07	] : 0.05	b : 0.03	d : 0.03	a : 0.03	= : 0.01	i : 0.01	
f : 0.21	e : 0.15	] : 0.15	c : 0.13	d : 0.07	g : 0.05	3 : 0.03	b : 0.03	4 : 0.03	= : 0.01	: : 0.01	i : 0.01	2 : 0.01	
f : 0.23	e : 0.19	c : 0.15	d : 0.09	3 : 0.05	b : 0.05	g : 0.05	] : 0.03	= : 0.01	D : 0.01	i : 0.01	2 : 0.01	h : 0.01	

#score	510.67671942156505
#seq	51
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_UTR_m3_run1.txt

#BEAR
iii[bb[bbmmmmbb]bb]iiii	chrX:153686577-153686833(+)$1	256	49	72	9.2422
ggggggcccmmmmccc]gggggg	chr12:69135560-69135827(+)$1	267	239	262	10.9891
dddd!!cccmmmmccc]ddddgg	chr17:27717611-27717858(+)$1	247	48	71	8.9865
ggggggg[ammmma]ggggggg6	chr17:46656335-46656607(-)$1	272	165	188	10.5357
gggg"""bbmmmmbb22gggggg	chr22:20073371-20073578(+)$1	207	109	132	9.7155
fffff[cccmmmmccc]ffffff	chr22:46508558-46508792(+)$1	234	206	229	8.3086
c$$$$$cccmmmmccc4444ccc	chr10:105154009-105154218(-)$1	209	16	39	7.6960
iiiiiiiooooooiiiiiiiiiC	chr3:49058343-49058552(-)$1	209	66	89	7.7027
ddd!!ddddmmmmdddd22dddd	chr17:30801680-30801883(+)$1	203	159	182	7.9078
b[gggggggmmmmggggggg]bb	chr22:20073205-20073447(+)$1	242	185	208	10.3261
eeee[ddddmmmmdddd4444ee	chr19:46142162-46142429(-)$1	267	188	211	7.8571
ddd!!ddddmmmmdddd22dddd	chr17:30801683-30801914(+)$1	231	156	179	7.9078
dd[ccc!!ammmma22ccc]ddd	chr1:2122202-2122496(-)$1	294	246	269	9.2035
==========lll==========	chr16:618516-618744(+)$1	228	37	60	9.0935
::gggggggmmmmgggggggggg	chr1:235273310-235273530(-)$1	220	73	96	8.7615
eeeee[cccmmmmccc]eeeeee	chr22:46508662-46508912(+)$1	250	80	103	8.9728
!dddd[cccmmmmccc]dddd22	chr1:2325968-2326243(+)$1	275	161	184	8.3929
dd[ccc!!ammmma22ccc]ddd	chr1:2122099-2122402(-)$1	303	152	175	9.2035
gggggg[bbmmmmbb]ggggggg	chr6:32938679-32938927(+)$1	248	140	163	10.7099
f[bb!!cccmmmmcccbbfffff	chr17:76793750-76793967(-)$1	217	13	36	8.0855
iiiiiiiiimmmmiiiiiiiii:	chr22:20067738-20067961(+)$1	223	63	86	10.6913
hhhhhddddmmmmdddd333hhh	chr1:27022508-27022754(+)$1	246	76	99	8.8192
d!!ccc[bbmmmmbb]ccc333d	chr2:242707056-242707337(+)$1	281	138	161	9.6373
"ccc[ddddmmmmdddd]ccc]c	chr17:80211014-80211280(-)$1	266	144	167	8.9238
!hhhhhhhhmmmmhhhhhhhh33	chr17:46657123-46657331(-)$1	208	152	175	10.2164
hhhhhhhbbmmmmbb]hhhhhhh	chr13:113918603-113918862(+)$1	259	83	106	9.5075
bb[ggggggglllggggggg]bb	chr19:46142015-46142254(-)$1	239	215	238	7.5184
hhhhhh[bbmmmmbbhhhhhhhh	chr17:56405888-56406161(-)$1	273	54	77	9.5921
eee!!a[bbmmmmbb]a22eeee	chr11:3877203-3877466(+)$1	263	118	141	8.9667
eccceeeeemmmmeeeee]ccc]	chr16:2139071-2139371(-)$1	300	110	133	8.2253
#hhhhhhhhmmmmhhhhhhhh44	chr17:46657131-46657365(-)$1	234	185	208	9.8547
b[gggggggmmmmggggggg]bb	chr22:20073378-20073640(+)$1	262	12	35	10.3261
c[affffffmmmmffffff]a]c	chr3:20081518-20081785(+)$1	267	51	74	7.8137
hhhhhh[bbmmmmbbhhhhhhhh	chr17:56405961-56406241(-)$1	280	134	157	9.5921
!hhhhhhhhmmmmhhhhhhhh33	chr17:8108202-8108422(-)$1	220	77	100	10.2164
[gggggggnnnnnggggggg]cc	chr19:917326-917630(+)$1	304	171	194	7.6275
!hhhhhhhhmmmmhhhhhhhh33	chr17:8108125-8108363(-)$1	238	18	41	10.2164
a[ggggggglllggggggg333a	chr3:49055793-49056057(-)$1	264	191	214	8.3667
ggggggg[ammmma]ggggggg]	chr17:27717311-27717662(+)$1	351	307	330	11.0391
gggg[bb[ammmmabbggggggg	chr19:40741696-40741934(-)$1	238	145	168	9.8644
==========lll==========	chr12:62997081-62997361(+)$1	280	80	103	9.0935
iiiiiiiiimmmmiiiiiiiii:	chr22:20067798-20068007(+)$1	209	3	26	10.6913
hhhhhh!!ammmma22hhhhhhh	chr8:102217336-102217599(-)$1	263	11	34	9.6171
Deeeeecccmmmmccc22eeeee	chr22:32022141-32022396(-)$1	255	178	201	7.4511
gggggg[bbmmmmbb]ggggggg	chr6:32938751-32939002(+)$1	251	68	91	10.7099
ee[a[ddddmmmmdddd]a]eee	chr7:127732464-127732717(+)$1	253	166	189	8.7007
eegggggggmmmmggggggg:dd	chr3:49050518-49050775(+)$1	257	158	181	9.3549
!hhhhhhhhmmmmhhhhhhhh33	chr17:46656908-46657187(-)$1	279	8	31	10.2164
iiiiiiiiimmmmiiiiiiiiid	chr1:182360744-182360967(-)$1	223	20	43	11.5196
bb!!eeeeemmmmeeeee333bb	chr10:70287015-70287285(-)$1	270	204	227	7.6356
eeee!!cccmmmmccc4444eee	chr19:49426130-49426383(+)$1	253	171	194	9.0418
dd"""ddddmmmmdddd333ddd	chr7:127732435-127732664(+)$1	229	108	131	8.1867
[hhhhhhhhmmmmhhhhhhhhcc	chr3:49050262-49050495(+)$1	233	119	142	10.0989
[gggggggnnnnnggggggg]dd	chr11:118965239-118965471(-)$1	232	202	225	7.4312
=========mmmm==========	chr19:18111975-18112272(+)$1	297	238	261	11.0511

#otherMatches

#Seq PSSM
Ugggcggcggcggcggcggcugc	chrX:153686577-153686833(+)$1	256	49	72	9.2422
UGAUAUGCUCUGUAGUAAUAUUA	chr12:69135560-69135827(+)$1	267	239	262	10.9891
ccgcccgccgaggggccgcggcg	chr17:27717611-27717858(+)$1	247	48	71	8.9865
GAGAUUUGGAAGGCGAAGUCUCC	chr17:46656335-46656607(-)$1	272	165	188	10.5357
UUUAAUAUGGAGACAGAUGAGAG	chr22:20073371-20073578(+)$1	207	109	132	9.7155
CCAGGUUUGGGGGCAGCCUUGGC	chr22:46508558-46508792(+)$1	234	206	229	8.3086
UUCCAUAGUAAUGACUCCCUGAC	chr10:105154009-105154218(-)$1	209	16	39	7.6960
GGUGGACGCGCGGGUUUACUUCC	chr3:49058343-49058552(-)$1	209	66	89	7.7027
CAGGUAGGGACUCCCUUGACUGC	chr17:30801680-30801883(+)$1	203	159	182	7.9078
CCCGGGUCUCAGCGGACUUGUGC	chr22:20073205-20073447(+)$1	242	185	208	10.3261
CCCGUUUUCAUCGGAGACCUCCG	chr19:46142162-46142429(-)$1	267	188	211	7.8571
CAGGUAGGGACUCCCUUGACUGC	chr17:30801683-30801914(+)$1	231	156	179	7.9078
CAGGUGGACACAGGGACACGUGU	chr1:2122202-2122496(-)$1	294	246	269	9.2035
GGGCUGGGCCCUGGGCUUGGCUC	chr16:618516-618744(+)$1	228	37	60	9.0935
GUAAUGCUUGAAAAGGCGUUGGU	chr1:235273310-235273530(-)$1	220	73	96	8.7615
CCCUGGCUGGGAGCGGGCAGGGC	chr22:46508662-46508912(+)$1	250	80	103	8.9728
agaggguuugcugaaggccucac	chr1:2325968-2326243(+)$1	275	161	184	8.3929
CAGGUGGACACAGGGACACGUGU	chr1:2122099-2122402(-)$1	303	152	175	9.2035
GAGGCGGAUACGGGUGUGCCUUU	chr6:32938679-32938927(+)$1	248	140	163	10.7099
GAGACAAGGCGUCCCUUCCCGGG	chr17:76793750-76793967(-)$1	217	13	36	8.0855
GGAGAGCCUGGACAGGCUUUCCA	chr22:20067738-20067961(+)$1	223	63	86	10.6913
UUCCCAGGCAAGGGCUUGGGGGG	chr1:27022508-27022754(+)$1	246	76	99	8.8192
CCACGUGUACGAGUGGACGGCCG	chr2:242707056-242707337(+)$1	281	138	161	9.6373
CUUGCUCUGCUCACAGAUCAGUC	chr17:80211014-80211280(-)$1	266	144	167	8.9238
AUAUAUAUAUAUGUAUAUGUAGU	chr17:46657123-46657331(-)$1	208	152	175	10.2164
UUGCAGUAUUUGUGUGAUUGCAA	chr13:113918603-113918862(+)$1	259	83	106	9.5075
AGAGGUCAGGAGUCUUGGCUACU	chr19:46142015-46142254(-)$1	239	215	238	7.5184
ACUGUAAGGGACCCCUGCAGUCC	chr17:56405888-56406161(-)$1	273	54	77	9.5921
AAACUUGGAGCACUUGACCUUUG	chr11:3877203-3877466(+)$1	263	118	141	8.9667
UGUGUAUAUUUUUGUAUGUCACU	chr16:2139071-2139371(-)$1	300	110	133	8.2253
AAUAUAUAUAUAUGUAUAUGUAG	chr17:46657131-46657365(-)$1	234	185	208	9.8547
CCCGGGUCUCAGCGGACUUGUGC	chr22:20073378-20073640(+)$1	262	12	35	10.3261
GAGGCUGGCAGCCGCCGGCACGC	chr3:20081518-20081785(+)$1	267	51	74	7.8137
ACUGUAAGGGACCCCUGCAGUCC	chr17:56405961-56406241(-)$1	280	134	157	9.5921
CGCUUCCGUGCCCAUGGGAGCCC	chr17:8108202-8108422(-)$1	220	77	100	10.2164
CGGCCAUGCACACCGUGGCUACG	chr19:917326-917630(+)$1	304	171	194	7.6275
CGCUUCCGUGCCCAUGGGAGCCC	chr17:8108125-8108363(-)$1	238	18	41	10.2164
CCGCGCGCUGCAGGCGCGCUUCG	chr3:49055793-49056057(-)$1	264	191	214	8.3667
UUACCAGGGGUGGUGUUGGUGGC	chr17:27717311-27717662(+)$1	351	307	330	11.0391
CUGGCGUCGGCCCCACCCAGCCC	chr19:40741696-40741934(-)$1	238	145	168	9.8644
GUGGAGGGAGCGGCUCUCUCCGC	chr12:62997081-62997361(+)$1	280	80	103	9.0935
GGAGAGCCUGGACAGGCUUUCCA	chr22:20067798-20068007(+)$1	209	3	26	10.6913
gguggggaccgugggacucgccg	chr8:102217336-102217599(-)$1	263	11	34	9.6171
CGGGCAGCCCUAGGGCCUUGCCC	chr22:32022141-32022396(-)$1	255	178	201	7.4511
GAGGCGGAUACGGGUGUGCCUUU	chr6:32938751-32939002(+)$1	251	68	91	10.7099
UACGUGCUGUCUGCAGCCCUUAU	chr7:127732464-127732717(+)$1	253	166	189	8.7007
GGGUGUGACCUCAGUCACAUGCC	chr3:49050518-49050775(+)$1	257	158	181	9.3549
AUAUAUAUAUAUGUAUAUGUAGU	chr17:46656908-46657187(-)$1	279	8	31	10.2164
GCGGGGCUGCUGGCGGCUCUGCA	chr1:182360744-182360967(-)$1	223	20	43	11.5196
GCAAUGCCGCAGGCGGCAGGGGC	chr10:70287015-70287285(-)$1	270	204	227	7.6356
CCAGCCUCCUCCUGGACCUCUUG	chr19:49426130-49426383(+)$1	253	171	194	9.0418
ACGUCCAUUCUCAAAUGCCAGUG	chr7:127732435-127732664(+)$1	229	108	131	8.1867
CUGGCAAGGCCAUCUUUGUCAAG	chr3:49050262-49050495(+)$1	233	119	142	10.0989
GGCUGCGGGGAGGCCGCAGCACC	chr11:118965239-118965471(-)$1	232	202	225	7.4312
GUGCUGCUGGAGGCGGCGGCGCC	chr19:18111975-18112272(+)$1	297	238	261	11.0511

#DB
(((.((.((....)).)).))))	chrX:153686577-153686833(+)$1	1	49	72	9.2422
(((((((((....))).))))))	chr12:69135560-69135827(+)$1	1	239	262	10.9891
((((..(((....))).))))((	chr17:27717611-27717858(+)$1	1	48	71	8.9865
(((((((.(....).))))))).	chr17:46656335-46656607(-)$1	1	165	188	10.5357
((((...((....))..))))))	chr22:20073371-20073578(+)$1	1	109	132	9.7155
(((((.(((....))).))))))	chr22:46508558-46508792(+)$1	1	206	229	8.3086
(.....(((....)))....)))	chr10:105154009-105154218(-)$1	1	16	39	7.6960
(((((((......))))))))))	chr3:49058343-49058552(-)$1	1	66	89	7.7027
(((..((((....))))..))))	chr17:30801680-30801883(+)$1	1	159	182	7.9078
(.(((((((....))))))).))	chr22:20073205-20073447(+)$1	1	185	208	10.3261
((((.((((....))))....))	chr19:46142162-46142429(-)$1	1	188	211	7.8571
(((..((((....))))..))))	chr17:30801683-30801914(+)$1	1	156	179	7.9078
((.(((..(....)..))).)))	chr1:2122202-2122496(-)$1	1	246	269	9.2035
((((((((((...))))))))))	chr16:618516-618744(+)$1	1	37	60	9.0935
..(((((((....)))))))(((	chr1:235273310-235273530(-)$1	1	73	96	8.7615
(((((.(((....))).))))))	chr22:46508662-46508912(+)$1	1	80	103	8.9728
.((((.(((....))).))))..	chr1:2325968-2326243(+)$1	1	161	184	8.3929
((.(((..(....)..))).)))	chr1:2122099-2122402(-)$1	1	152	175	9.2035
((((((.((....)).)))))))	chr6:32938679-32938927(+)$1	1	140	163	10.7099
(.((..(((....))))))))))	chr17:76793750-76793967(-)$1	1	13	36	8.0855
(((((((((....))))))))).	chr22:20067738-20067961(+)$1	1	63	86	10.6913
(((((((((....))))...)))	chr1:27022508-27022754(+)$1	1	76	99	8.8192
(..(((.((....)).)))...)	chr2:242707056-242707337(+)$1	1	138	161	9.6373
.(((.((((....)))).))).)	chr17:80211014-80211280(-)$1	1	144	167	8.9238
.((((((((....))))))))..	chr17:46657123-46657331(-)$1	1	152	175	10.2164
(((((((((....)).)))))))	chr13:113918603-113918862(+)$1	1	83	106	9.5075
((.(((((((...))))))).))	chr19:46142015-46142254(-)$1	1	215	238	7.5184
((((((.((....))))))))))	chr17:56405888-56406161(-)$1	1	54	77	9.5921
(((..(.((....)).)..))))	chr11:3877203-3877466(+)$1	1	118	141	8.9667
(((((((((....))))).))).	chr16:2139071-2139371(-)$1	1	110	133	8.2253
.((((((((....))))))))..	chr17:46657131-46657365(-)$1	1	185	208	9.8547
(.(((((((....))))))).))	chr22:20073378-20073640(+)$1	1	12	35	10.3261
(.(((((((....)))))).).)	chr3:20081518-20081785(+)$1	1	51	74	7.8137
((((((.((....))))))))))	chr17:56405961-56406241(-)$1	1	134	157	9.5921
.((((((((....))))))))..	chr17:8108202-8108422(-)$1	1	77	100	10.2164
.(((((((.....))))))).))	chr19:917326-917630(+)$1	1	171	194	7.6275
.((((((((....))))))))..	chr17:8108125-8108363(-)$1	1	18	41	10.2164
(.(((((((...)))))))...)	chr3:49055793-49056057(-)$1	1	191	214	8.3667
(((((((.(....).))))))).	chr17:27717311-27717662(+)$1	1	307	330	11.0391
((((.((.(....))))))))))	chr19:40741696-40741934(-)$1	1	145	168	9.8644
((((((((((...))))))))))	chr12:62997081-62997361(+)$1	1	80	103	9.0935
(((((((((....))))))))).	chr22:20067798-20068007(+)$1	1	3	26	10.6913
((((((..(....)..)))))))	chr8:102217336-102217599(-)$1	1	11	34	9.6171
)((((((((....)))..)))))	chr22:32022141-32022396(-)$1	1	178	201	7.4511
((((((.((....)).)))))))	chr6:32938751-32939002(+)$1	1	68	91	10.7099
((.(.((((....)))).).)))	chr7:127732464-127732717(+)$1	1	166	189	8.7007
))(((((((....))))))).((	chr3:49050518-49050775(+)$1	1	158	181	9.3549
.((((((((....))))))))..	chr17:46656908-46657187(-)$1	1	8	31	10.2164
(((((((((....)))))))))(	chr1:182360744-182360967(-)$1	1	20	43	11.5196
((..(((((....)))))...))	chr10:70287015-70287285(-)$1	1	204	227	7.6356
((((..(((....)))....)))	chr19:49426130-49426383(+)$1	1	171	194	9.0418
((...((((....))))...)))	chr7:127732435-127732664(+)$1	1	108	131	8.1867
.((((((((....))))))))))	chr3:49050262-49050495(+)$1	1	119	142	10.0989
.(((((((.....))))))).))	chr11:118965239-118965471(-)$1	1	202	225	7.4312
(((((((((....))))))))))	chr19:18111975-18112272(+)$1	1	238	261	11.0511

#PSSM
g : 0.12	d : 0.12	e : 0.12	i : 0.09	! : 0.09	h : 0.09	b : 0.07	= : 0.05	[ : 0.05	f : 0.03	c : 0.03	: : 0.01	" : 0.01	# : 0.01	a : 0.01	D : 0.01	
h : 0.20	g : 0.16	d : 0.12	e : 0.12	i : 0.09	[ : 0.09	= : 0.05	c : 0.03	b : 0.03	f : 0.01	$ : 0.01	: : 0.01	! : 0.01	
g : 0.25	h : 0.20	i : 0.09	e : 0.09	d : 0.07	[ : 0.07	= : 0.05	! : 0.03	c : 0.03	f : 0.01	$ : 0.01	b : 0.01	a : 0.01	" : 0.01	
g : 0.27	h : 0.20	c : 0.09	i : 0.07	! : 0.07	e : 0.07	= : 0.05	d : 0.03	f : 0.03	[ : 0.01	$ : 0.01	b : 0.01	a : 0.01	" : 0.01	
g : 0.23	h : 0.20	! : 0.10	i : 0.07	[ : 0.07	e : 0.07	c : 0.05	= : 0.05	" : 0.03	f : 0.03	b : 0.01	$ : 0.01	d : 0.01	
g : 0.23	h : 0.18	d : 0.12	i : 0.07	! : 0.05	[ : 0.05	c : 0.05	= : 0.05	e : 0.05	b : 0.03	" : 0.01	$ : 0.01	a : 0.01	f : 0.01	
g : 0.18	c : 0.16	[ : 0.12	d : 0.12	h : 0.12	i : 0.07	! : 0.05	= : 0.05	e : 0.03	" : 0.01	f : 0.01	b : 0.01	
b : 0.16	c : 0.16	g : 0.14	d : 0.12	h : 0.10	[ : 0.05	! : 0.05	= : 0.05	i : 0.05	e : 0.03	o : 0.01	f : 0.01	
b : 0.16	c : 0.16	d : 0.12	a : 0.10	g : 0.10	h : 0.10	= : 0.05	i : 0.05	e : 0.03	n : 0.03	o : 0.01	f : 0.01	
m : 0.87	= : 0.03	n : 0.03	o : 0.01	g : 0.01	l : 0.01	
m : 0.87	l : 0.07	n : 0.03	o : 0.01	
m : 0.87	l : 0.07	n : 0.03	o : 0.01	
m : 0.87	l : 0.05	n : 0.03	o : 0.01	g : 0.01	
b : 0.16	c : 0.16	g : 0.14	d : 0.12	a : 0.10	h : 0.10	i : 0.07	= : 0.05	e : 0.03	f : 0.01	
b : 0.18	c : 0.16	g : 0.14	d : 0.12	h : 0.10	i : 0.07	2 : 0.05	= : 0.05	] : 0.03	e : 0.03	f : 0.01	
g : 0.18	c : 0.16	h : 0.14	d : 0.12	] : 0.10	2 : 0.07	i : 0.07	= : 0.05	e : 0.03	f : 0.01	b : 0.01	
g : 0.23	h : 0.18	d : 0.12	] : 0.09	i : 0.07	c : 0.05	= : 0.05	b : 0.03	2 : 0.03	4 : 0.03	e : 0.03	a : 0.01	f : 0.01	
g : 0.27	h : 0.18	i : 0.07	2 : 0.07	4 : 0.05	c : 0.05	= : 0.05	e : 0.05	b : 0.03	d : 0.03	f : 0.03	3 : 0.03	] : 0.03	
g : 0.27	h : 0.18	i : 0.07	c : 0.07	f : 0.05	4 : 0.05	2 : 0.05	= : 0.05	3 : 0.05	] : 0.03	d : 0.03	e : 0.03	a : 0.01	
g : 0.25	h : 0.18	i : 0.09	3 : 0.09	d : 0.07	] : 0.07	4 : 0.05	= : 0.05	e : 0.05	f : 0.03	c : 0.03	
h : 0.20	g : 0.14	d : 0.12	i : 0.09	] : 0.09	e : 0.09	c : 0.05	= : 0.05	3 : 0.05	f : 0.03	4 : 0.01	a : 0.01	: : 0.01	
g : 0.16	d : 0.12	e : 0.10	3 : 0.10	i : 0.09	h : 0.09	c : 0.07	b : 0.07	= : 0.05	f : 0.03	] : 0.03	2 : 0.01	4 : 0.01	
d : 0.16	g : 0.12	e : 0.10	c : 0.09	h : 0.09	b : 0.07	3 : 0.07	= : 0.05	f : 0.03	: : 0.03	] : 0.03	i : 0.01	6 : 0.01	C : 0.01	2 : 0.01	4 : 0.01	a : 0.01	

#score	507.41552868567106
#seq	55
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_transcript_m2_run1.txt

#BEAR
dddd[a[cccnnnnnccc]a]dddd	chr1:115110163-115110408(-)$1	245	18	43	12.3530
dd[gggggggoooooogggggggdd	chr9:116812172-116812442(+)$1	270	230	255	9.1759
==[a!!ddddnnnnndddd22a]==	chr7:72855368-72855630(-)$1	262	126	151	13.1417
gggggggcccnnnnnccc]gggggg	chr7:155094415-155094654(+)$1	239	1	26	13.5476
[bbccc[cccnnnnnccc]ccc]bb	chr19:5151673-5151988(+)$1	315	103	128	12.0942
eeee"""cccnnnnnccc333eeee	chr5:112930631-112930870(+)$1	239	60	85	12.5708
[iiiiiiiiinnnnniiiiiiiii]	chr2:109400372-109400643(+)$1	271	37	62	14.2247
==========nnnnn==========	chr19:13033330-13033614(-)$1	284	214	239	15.0931
:iiiiiiiiinnnnniiiiiiiii:	chr6:26523196-26523472(+)$1	276	214	239	12.0704
==========nnnnn==========	chr6:33421121-33421340(+)$1	219	158	183	15.0931
f"""ffffffnnnnnffffff]fff	chr6:132781124-132781431(-)$1	307	31	56	11.9974
==========nnnnn==========	chr20:34636398-34636617(-)$1	219	132	157	15.0931
dddd[eeeeennnnneeeee4444d	chr5:61686672-61686920(+)$1	248	123	148	12.2572
==========oooooo=========	chr6:26525075-26525311(+)$1	236	59	84	11.1541
====ffffffnnnnnffffff22==	chr2:75119717-75119958(+)$1	241	144	169	12.6201
==========nnnnn==========	chr1:39317186-39317429(-)$1	243	133	158	15.0931
ggggg[ddddnnnnndddd]ggggg	chr19:11244270-11244521(+)$1	251	124	149	13.1016
iiiii[ddddooooooddddiiiii	chr4:186339655-186339953(-)$1	298	196	221	9.5295
iiiiiiii[aooooooa]iiiiiii	chr9:79001461-79001718(-)$1	257	169	194	10.0050
d[ddddddddnnnnndddd]dddd]	chr11:94899536-94899811(-)$1	275	194	219	11.3912
##dddd[cccnnnnnccc]dddd33	chr17:27900399-27900686(-)$1	287	233	258	12.2034
ffffff[cccnnnnncccffffffd	chr20:47652379-47652624(+)$1	245	194	219	11.9274
bb[eeeeebbnnnnnbb333eeeee	chr7:149171287-149171554(-)$1	267	168	193	10.9391
eee!!eeeeeooooooeeeee333e	chr18:29128487-29128748(+)$1	261	203	228	8.9567
eeee[eeeeennnnneeeee]eeee	chr1:228285736-228285994(+)$1	258	134	159	11.9871
dddd!!ddddnnnnndddd22dddd	chr10:75135810-75136076(-)$1	266	23	48	11.4759
cccgggggggnnnnnggggggg::f	chr7:123324388-123324633(-)$1	245	60	85	11.1342
dd!!ffffffnnnnnffffffdddd	chr2:20232322-20232610(-)$1	288	44	69	11.5385
ddd[ccc[bbnnnnnbb]ccc]ddd	chr6:146120974-146121267(-)$1	293	208	233	11.1580
=========annnnna]========	chr10:75510858-75511098(+)$1	240	70	95	14.7459
f[ccc[ddddnnnnndddd]ccc33	chr17:38544737-38545019(-)$1	282	67	92	12.9032
cc!!a[ddddnnnnndddd]a]ccc	chr6:24785871-24786182(+)$1	311	44	69	12.8680
ffffffffffnnnnnffffff333f	chr5:96369546-96369790(+)$1	244	193	218	11.9915
i"""a[ddddnnnnndddd]a333i	chr3:150177001-150177254(+)$1	253	101	126	13.6588
iiiiffffffnnnnnffffff333i	chr11:125526799-125527106(+)$1	307	161	186	12.9657
ggggggggggnnnnnggggggg:::	chr15:102182559-102182798(-)$1	239	140	165	10.4448
:ccc[bbcccnnnnnccc]bb]ccc	chr15:38645395-38645648(+)$1	253	2	27	10.9393
####ffffffnnnnnffffff4444	chrX:118604965-118605226(+)$1	261	152	177	12.6311
e"""bb[cccnnnnnccc]bb4444	chr9:33110585-33110872(-)$1	287	60	85	12.6713
ffffffddddnnnnndddd]fffff	chr11:33730682-33730910(-)$1	228	159	184	11.5964
"""eeeee[annnnna]eeeee]ee	chr11:46342602-46342937(+)$1	335	220	245	12.3197
ecccccccccnnnnnccc4444ccc	chr19:8469091-8469366(+)$1	275	40	65	12.5786
==========nnnnn==========	chr20:54944553-54944829(-)$1	276	25	50	15.0931
==####ddddnnnnndddd22====	chrX:44971299-44971587(+)$1	288	14	39	13.1573
fff!!eeeeennnnneeeeefffff	chr12:100691706-100691994(+)$1	288	140	165	11.7974
fffffeeeeennnnneeeee]ffff	chr2:30482359-30482636(+)$1	277	121	146	11.4994
=====[ddddoooooodddd]====	chr11:65763982-65764239(-)$1	257	219	244	10.0430
&&&gggggggnnnnnggggggg444	chr9:98205862-98206141(-)$1	279	73	98	11.8977
iiiiiiiibbnnnnnbb]iiiiiii	chr22:50713316-50713571(-)$1	255	11	36	13.1642
""eeeee[bbnnnnnbb]eeeee44	chr18:9954408-9954649(+)$1	241	100	125	11.6343
diiiiiiiiinnnnniiiiiiiii6	chr6:41757425-41757630(+)$1	205	165	190	13.5804
dddd[a[cccnnnnnccc]a]dddd	chr1:115110289-115110547(-)$1	258	157	182	12.3530
eeee[eeeeennnnneeeeeeeeee	chrX:152481654-152481925(-)$1	271	61	86	11.7793
eeegggggggnnnnnggggggg]ee	chr22:35689706-35689961(+)$1	255	144	169	13.0712
!!ccc[ddddnnnnnddddccc22b	chr21:35470899-35471150(+)$1	251	173	198	12.1901
)))gggggggnnnnnggggggg000	chr17:59942769-59943025(-)$1	256	113	138	10.7741

#otherMatches

#Seq PSSM
GACUUUGUCUAAUAAAGAGAUAGUU	chr1:115110163-115110408(-)$1	245	18	43	12.3530
GAAGAUAUGAAUAAACUCAUGUUUC	chr9:116812172-116812442(+)$1	270	230	255	9.1759
CAUCCACUCUCCUCUAGAGCAGUUG	chr7:72855368-72855630(-)$1	262	126	151	13.1417
GAAAUUGACUGCUAAGGUACAGUUU	chr7:155094415-155094654(+)$1	239	1	26	13.5476
AGCUCUCUUCUUCUCGAAAAGGUGC	chr19:5151673-5151988(+)$1	315	103	128	12.0942
UAUAUUCCACUGUAUGUGUAUUAUG	chr5:112930631-112930870(+)$1	239	60	85	12.5708
UUAGCUAUUACAAUUUGAUAGUUAU	chr2:109400372-109400643(+)$1	271	37	62	14.2247
GGGUAGCAGGUUCCUUCUGUUGUCC	chr19:13033330-13033614(-)$1	284	214	239	15.0931
CAACAUCUAGUCUUUCUGGAUGUUA	chr6:26523196-26523472(+)$1	276	214	239	12.0704
GGGUAGGGAGUUGCUCUUCCUACCU	chr6:33421121-33421340(+)$1	219	158	183	15.0931
GCACAAAGUGUCUUUCAUUUUUUUG	chr6:132781124-132781431(-)$1	307	31	56	11.9974
AAAUAUCUAGUCUUUCUAGAUAUUU	chr20:34636398-34636617(-)$1	219	132	157	15.0931
UCUUCUGGUAUUAUCUAUCAAUAUA	chr5:61686672-61686920(+)$1	248	123	148	12.2572
CAGUGUGUUUAUGAUGAGGCACAUU	chr6:26525075-26525311(+)$1	236	59	84	11.1541
AUACGACUUUUAAGCAAAGUUGGGU	chr2:75119717-75119958(+)$1	241	144	169	12.6201
GUAUAUAUGGGUAAGUUAUGUAUAU	chr1:39317186-39317429(-)$1	243	133	158	15.0931
GUGGCUUCUGGGAGAUGGGUGUCAC	chr19:11244270-11244521(+)$1	251	124	149	13.1016
AUACUGCGCUUUAUUCAGUGAGUAU	chr4:186339655-186339953(-)$1	298	196	221	9.5295
UGAAGACAGUAAAAUAAGUGUUUUC	chr9:79001461-79001718(-)$1	257	169	194	10.0050
UUUAUCCUUAAGUUGUGAGCGAUAU	chr11:94899536-94899811(-)$1	275	194	219	11.3912
UGGCAGACAUGAAGGGUGACUGCAA	chr17:27900399-27900686(-)$1	287	233	258	12.2034
AAGGAUAUACAUUUAGUAGUCUUUG	chr20:47652379-47652624(+)$1	245	194	219	11.9274
GCGGGACGGGGAGAACCAAAUGUCC	chr7:149171287-149171554(-)$1	267	168	193	10.9391
UUCUAAAUGAUUUUCUUUGUUCCUG	chr18:29128487-29128748(+)$1	261	203	228	8.9567
GGCUUUUUAUUUAAUGUAAAUAGUU	chr1:228285736-228285994(+)$1	258	134	159	11.9871
CUUAUUAUUUAAAAAGAAUUUUAAG	chr10:75135810-75136076(-)$1	266	23	48	11.4759
AUCuauauauuauauauauauauau	chr7:123324388-123324633(-)$1	245	60	85	11.1342
GUAGUUGGGUAUAAGAUCUGAACUU	chr2:20232322-20232610(-)$1	288	44	69	11.5385
UUUGAAAUGUGUGAAAUUUUUGGAA	chr6:146120974-146121267(-)$1	293	208	233	11.1580
GCCAGGCUGCAUAUGGCCAGUUUGG	chr10:75510858-75511098(+)$1	240	70	95	14.7459
UCAUUUUGGGAAAUCUCCAUAAUUU	chr17:38544737-38545019(-)$1	282	67	92	12.9032
AUUUGAUUCUGAAGAAGAAACUGUU	chr6:24785871-24786182(+)$1	311	44	69	12.8680
ACCCAGUCCAUUGCUUGGACUUACG	chr5:96369546-96369790(+)$1	244	193	218	11.9915
UGUAAGUAUGAAGAACAUAGUGCAA	chr3:150177001-150177254(+)$1	253	101	126	13.6588
CCUGUAAUGUUCAUUAUAUUGUUGU	chr11:125526799-125527106(+)$1	307	161	186	12.9657
AGCAGGGCUUAGAAAAAGCCCUUUU	chr15:102182559-102182798(-)$1	239	140	165	10.4448
UGAAGCUCAUUUUCUAUGCAGGUUU	chr15:38645395-38645648(+)$1	253	2	27	10.9393
GUGGCAACUAUUUACUGGUUGAAAA	chrX:118604965-118605226(+)$1	261	152	177	12.6311
CUUUCAUGUCCCAGAGACCUGUUGU	chr9:33110585-33110872(-)$1	287	60	85	12.6713
UGCAGGGGUAUGUUUUACCAUCUGC	chr11:33730682-33730910(-)$1	228	159	184	11.5964
AAAGAGGGACUACCUGACCCUCACC	chr11:46342602-46342937(+)$1	335	220	245	12.3197
UACAACCGCUCUUGUAGCCUUUGGU	chr19:8469091-8469366(+)$1	275	40	65	12.5786
UUAUUGGGUUGGCGAAGCCUGGUAA	chr20:54944553-54944829(-)$1	276	25	50	15.0931
UACAUAUUUAUUGCUUGAAAAUAUU	chrX:44971299-44971587(+)$1	288	14	39	13.1573
GUUUAGCCAAUGUUCUUGGUAACUG	chr12:100691706-100691994(+)$1	288	140	165	11.7974
GCGUAACAAAUCUACUUUGUGUAUG	chr2:30482359-30482636(+)$1	277	121	146	11.4994
AGAUAUGUAUGUGUGUGUAUCUAUC	chr11:65763982-65764239(-)$1	257	219	244	10.0430
UGCCAUAUAAUUUAUUUAUAUGAAG	chr9:98205862-98206141(-)$1	279	73	98	11.8977
CGGGGCCCAGACAUCCUGGGGUCCU	chr22:50713316-50713571(-)$1	255	11	36	13.1642
UUCAAGAAUUGUUCAGAGUCUUGUA	chr18:9954408-9954649(+)$1	241	100	125	11.6343
CUGUUUUAAAAAACAUUUGAAAUAA	chr6:41757425-41757630(+)$1	205	165	190	13.5804
GACUUUGUCUAAUAAAGAGAUAGUU	chr1:115110289-115110547(-)$1	258	157	182	12.3530
GAUGGUUGAAUGAACUUCAGCAUCC	chrX:152481654-152481925(-)$1	271	61	86	11.7793
UUAGCCAAGAGGAAAUUUUGGCAUG	chr22:35689706-35689961(+)$1	255	144	169	13.0712
GAUGUUAGAGAAAAGCUCUACAGAU	chr21:35470899-35471150(+)$1	251	173	198	12.1901
UUUUCAUCAGAUUUGUUGAUGAUGU	chr17:59942769-59943025(-)$1	256	113	138	10.7741

#DB
((((.(.(((.....))).).))))	chr1:115110163-115110408(-)$1	1	18	43	12.3530
((.(((((((......)))))))))	chr9:116812172-116812442(+)$1	1	230	255	9.1759
((.(..((((.....))))..).))	chr7:72855368-72855630(-)$1	1	126	151	13.1417
((((((((((.....))).))))))	chr7:155094415-155094654(+)$1	1	1	26	13.5476
.(((((.(((.....))).))).))	chr19:5151673-5151988(+)$1	1	103	128	12.0942
((((...(((.....)))...))))	chr5:112930631-112930870(+)$1	1	60	85	12.5708
.(((((((((.....))))))))).	chr2:109400372-109400643(+)$1	1	37	62	14.2247
((((((((((.....))))))))))	chr19:13033330-13033614(-)$1	1	214	239	15.0931
.(((((((((.....))))))))).	chr6:26523196-26523472(+)$1	1	214	239	12.0704
((((((((((.....))))))))))	chr6:33421121-33421340(+)$1	1	158	183	15.0931
(...((((((.....)))))).)))	chr6:132781124-132781431(-)$1	1	31	56	11.9974
((((((((((.....))))))))))	chr20:34636398-34636617(-)$1	1	132	157	15.0931
((((.(((((.....)))))....)	chr5:61686672-61686920(+)$1	1	123	148	12.2572
((((((((((......)))))))))	chr6:26525075-26525311(+)$1	1	59	84	11.1541
((((((((((.....))))))..))	chr2:75119717-75119958(+)$1	1	144	169	12.6201
((((((((((.....))))))))))	chr1:39317186-39317429(-)$1	1	133	158	15.0931
(((((.((((.....)))).)))))	chr19:11244270-11244521(+)$1	1	124	149	13.1016
(((((.((((......)))))))))	chr4:186339655-186339953(-)$1	1	196	221	9.5295
((((((((.(......).)))))))	chr9:79001461-79001718(-)$1	1	169	194	10.0050
(.((((((((.....)))).)))).	chr11:94899536-94899811(-)$1	1	194	219	11.3912
..((((.(((.....))).))))..	chr17:27900399-27900686(-)$1	1	233	258	12.2034
((((((.(((.....))))))))))	chr20:47652379-47652624(+)$1	1	194	219	11.9274
((.(((((((.....))...)))))	chr7:149171287-149171554(-)$1	1	168	193	10.9391
(((..(((((......)))))...)	chr18:29128487-29128748(+)$1	1	203	228	8.9567
((((.(((((.....))))).))))	chr1:228285736-228285994(+)$1	1	134	159	11.9871
((((..((((.....))))..))))	chr10:75135810-75136076(-)$1	1	23	48	11.4759
)))(((((((.....)))))))..(	chr7:123324388-123324633(-)$1	1	60	85	11.1342
((..((((((.....))))))))))	chr2:20232322-20232610(-)$1	1	44	69	11.5385
(((.(((.((.....)).))).)))	chr6:146120974-146121267(-)$1	1	208	233	11.1580
((((((((((.....).))))))))	chr10:75510858-75511098(+)$1	1	70	95	14.7459
(.(((.((((.....)))).)))..	chr17:38544737-38545019(-)$1	1	67	92	12.9032
((..(.((((.....)))).).)))	chr6:24785871-24786182(+)$1	1	44	69	12.8680
((((((((((.....))))))...)	chr5:96369546-96369790(+)$1	1	193	218	11.9915
(...(.((((.....)))).)...)	chr3:150177001-150177254(+)$1	1	101	126	13.6588
((((((((((.....))))))...)	chr11:125526799-125527106(+)$1	1	161	186	12.9657
)))(((((((.....)))))))...	chr15:102182559-102182798(-)$1	1	140	165	10.4448
.(((.(((((.....))).)).)))	chr15:38645395-38645648(+)$1	1	2	27	10.9393
....((((((.....))))))....	chrX:118604965-118605226(+)$1	1	152	177	12.6311
(...((.(((.....))).))....	chr9:33110585-33110872(-)$1	1	60	85	12.6713
((((((((((.....)))).)))))	chr11:33730682-33730910(-)$1	1	159	184	11.5964
...(((((.(.....).))))).))	chr11:46342602-46342937(+)$1	1	220	245	12.3197
((((((((((.....)))....)))	chr19:8469091-8469366(+)$1	1	40	65	12.5786
((((((((((.....))))))))))	chr20:54944553-54944829(-)$1	1	25	50	15.0931
((....((((.....))))..))))	chrX:44971299-44971587(+)$1	1	14	39	13.1573
(((..(((((.....))))))))))	chr12:100691706-100691994(+)$1	1	140	165	11.7974
((((((((((.....))))).))))	chr2:30482359-30482636(+)$1	1	121	146	11.4994
(((((.((((......)))).))))	chr11:65763982-65764239(-)$1	1	219	244	10.0430
...(((((((.....)))))))...	chr9:98205862-98206141(-)$1	1	73	98	11.8977
((((((((((.....)).)))))))	chr22:50713316-50713571(-)$1	1	11	36	13.1642
..(((((.((.....)).)))))..	chr18:9954408-9954649(+)$1	1	100	125	11.6343
((((((((((.....))))))))).	chr6:41757425-41757630(+)$1	1	165	190	13.5804
((((.(.(((.....))).).))))	chr1:115110289-115110547(-)$1	1	157	182	12.3530
((((.(((((.....))))))))))	chrX:152481654-152481925(-)$1	1	61	86	11.7793
((((((((((.....))))))).))	chr22:35689706-35689961(+)$1	1	144	169	13.0712
..(((.((((.....)))))))..)	chr21:35470899-35471150(+)$1	1	173	198	12.1901
...(((((((.....)))))))...	chr17:59942769-59943025(-)$1	1	113	138	10.7741

#PSSM
= : 0.19	d : 0.16	e : 0.12	f : 0.12	i : 0.08	g : 0.05	[ : 0.03	: : 0.03	# : 0.03	c : 0.03	" : 0.03	b : 0.01	& : 0.01	! : 0.01	) : 0.01	
= : 0.19	d : 0.12	i : 0.12	e : 0.08	" : 0.08	f : 0.08	c : 0.07	g : 0.05	b : 0.03	[ : 0.03	# : 0.03	& : 0.01	! : 0.01	) : 0.01	
= : 0.16	d : 0.12	i : 0.12	e : 0.10	f : 0.08	c : 0.08	" : 0.07	[ : 0.05	g : 0.05	! : 0.03	# : 0.03	b : 0.01	& : 0.01	) : 0.01	
= : 0.16	g : 0.14	i : 0.12	d : 0.10	e : 0.10	c : 0.08	f : 0.07	! : 0.07	" : 0.05	# : 0.03	a : 0.01	[ : 0.01	
f : 0.16	g : 0.14	= : 0.14	[ : 0.10	i : 0.10	c : 0.08	! : 0.07	e : 0.05	d : 0.03	a : 0.03	" : 0.01	b : 0.01	# : 0.01	
e : 0.16	f : 0.14	g : 0.12	= : 0.12	[ : 0.12	i : 0.08	c : 0.05	a : 0.03	! : 0.03	d : 0.03	b : 0.03	" : 0.01	# : 0.01	
d : 0.21	e : 0.16	g : 0.12	= : 0.12	[ : 0.10	f : 0.10	i : 0.08	c : 0.03	" : 0.01	b : 0.01	
d : 0.21	c : 0.17	e : 0.14	= : 0.12	g : 0.10	f : 0.10	i : 0.08	[ : 0.03	
d : 0.21	c : 0.17	= : 0.12	g : 0.10	f : 0.10	e : 0.10	b : 0.07	i : 0.05	[ : 0.03	
d : 0.21	c : 0.17	g : 0.10	= : 0.10	f : 0.10	e : 0.10	b : 0.07	i : 0.05	a : 0.05	
n : 0.89	o : 0.10	
n : 0.89	o : 0.10	
n : 0.89	o : 0.10	
n : 0.89	o : 0.10	
n : 0.89	o : 0.10	
c : 0.17	d : 0.17	o : 0.10	f : 0.10	= : 0.08	e : 0.08	g : 0.08	b : 0.07	i : 0.05	a : 0.03	
d : 0.21	c : 0.17	g : 0.10	= : 0.10	f : 0.10	e : 0.10	b : 0.07	i : 0.05	] : 0.03	a : 0.01	
d : 0.21	c : 0.17	= : 0.12	e : 0.12	g : 0.10	f : 0.10	] : 0.07	i : 0.05	3 : 0.01	
d : 0.21	e : 0.14	] : 0.12	= : 0.12	f : 0.12	g : 0.10	i : 0.08	3 : 0.03	c : 0.01	4 : 0.01	
e : 0.14	g : 0.12	= : 0.12	f : 0.12	] : 0.10	i : 0.08	2 : 0.05	c : 0.05	d : 0.05	a : 0.03	3 : 0.03	b : 0.03	4 : 0.01	
f : 0.16	g : 0.14	= : 0.12	i : 0.10	] : 0.08	e : 0.08	c : 0.07	2 : 0.05	4 : 0.03	d : 0.03	a : 0.03	b : 0.03	3 : 0.01	
= : 0.16	g : 0.14	d : 0.10	e : 0.10	i : 0.10	] : 0.07	4 : 0.07	f : 0.07	3 : 0.07	c : 0.05	a : 0.01	2 : 0.01	
= : 0.16	d : 0.12	i : 0.10	e : 0.08	f : 0.08	] : 0.07	4 : 0.07	3 : 0.07	c : 0.07	g : 0.05	2 : 0.03	: : 0.03	0 : 0.01	
= : 0.19	d : 0.12	e : 0.10	i : 0.10	3 : 0.10	f : 0.08	4 : 0.08	c : 0.05	g : 0.03	: : 0.03	b : 0.01	2 : 0.01	0 : 0.01	
= : 0.19	d : 0.14	e : 0.12	f : 0.10	i : 0.08	4 : 0.07	c : 0.05	g : 0.03	b : 0.03	] : 0.03	: : 0.03	3 : 0.03	6 : 0.01	0 : 0.01	

#score	687.2788856203609
#seq	56
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_UTR_m3_run1.txt

#BEAR
ebb[cccqqqqqqqqccc22	chr19:1009893-1010196(-)$1	303	28	48	14.4301
ddddcccqqqqqqqqccc]d	chr1:1228297-1228560(-)$1	263	170	190	14.6594
gggggggqqqqqqqqggggg	chr2:97525528-97525808(-)$1	280	81	101	14.5434
ddddcccqqqqqqqqccc]d	chr15:75192449-75192730(-)$1	281	77	97	14.6594
f[eeeeeqqqqqqqqeeeee	chr16:88781867-88782129(-)$1	262	40	60	14.0236
eeeee[aqqqqqqqqaeeee	chr1:11721366-11721635(+)$1	269	202	222	14.1110
!eeeeeaqqqqqqqqa]eee	chr14:75370045-75370307(+)$1	262	206	226	14.1625
dddd[bbqqqqqqqqbb]dd	chr1:6695249-6695503(-)$1	254	88	108	13.7909
ddeeeeeqqqqqqqqeeeee	chr16:1496114-1496376(-)$1	262	98	118	13.7787
eeee[bbqqqqqqqqbb]ee	chr1:53364745-53364966(-)$1	221	180	200	13.9539
ccc[cccqqqqqqqqccc]c	chr1:1322522-1322752(-)$1	230	66	86	15.2219
[ffffffqqqqqqqqfffff	chr3:47050608-47050924(+)$1	316	256	276	13.3388
dddd[bbqqqqqqqqbb]dd	chr3:184100580-184100825(+)$1	245	150	170	13.7909
ddd[a[aqqqqqqqqa]add	chr16:89977590-89977831(+)$1	241	148	168	13.9599
g"""cccqqqqqqqqccc44	chr14:24105682-24105898(+)$1	216	184	204	15.3130
!!eeeeeqqqqqqqqeeeee	chr11:727458-727678(+)$1	220	125	145	14.1458
ccc[cccqqqqqqqqccccc	chr7:32526662-32527002(-)$1	340	99	119	15.0750
bffffffqqqqqqqqfffff	chr16:2821097-2821344(+)$1	247	60	80	12.9967
iiiiiiiqqqqqqqqiiiii	chr17:80445758-80446081(+)$1	323	5	25	14.7228
gggggggqqqqqqqqggggg	chr7:73007749-73007967(-)$1	218	172	192	14.5434
ff!!cccqqqqqqqqccc55	chr14:24105569-24105774(+)$1	205	102	122	13.9001
gggggggqqqqqqqqggggg	chr9:117068749-117069051(+)$1	302	273	293	14.5434
c!!ddddqqqqqqqqdddd2	chr6:32135643-32135943(+)$1	300	164	184	14.7711
iiiiiiiqqqqqqqqiiiii	chr17:7162940-7163302(+)$1	362	287	307	14.7228
=======qqqqqqqq=====	chr19:19101693-19101933(-)$1	240	139	159	15.0400
ccc[cccqqqqqqqqccc]c	chr12:120565207-120565474(-)$1	267	215	235	15.2219
dd"""bbqqqqqqqqbbddd	chr8:145737538-145737780(-)$1	242	133	153	13.8841
ff!!cccqqqqqqqqccc55	chr14:24105553-24105761(+)$1	208	118	138	13.9001
h!!ddddqqqqqqqqdddd3	chr12:108962842-108963145(+)$1	303	108	128	14.8032
c[eeeeeqqqqqqqqeeeee	chr13:115070863-115071179(+)$1	316	206	226	14.0908
gggggggqqqqqqqqggggg	chr19:19756024-19756421(-)$1	397	194	214	14.5434
bb[ddddqqqqqqqqddddb	chr3:49133311-49133552(-)$1	241	205	225	13.9084
eeeddddqqqqqqqqdddd]	chr15:65108237-65108486(-)$1	249	136	156	14.4477
g[ccc[aqqqqqqqqacccg	chr11:295154-295417(+)$1	263	18	38	14.7027
[ccc[bbqqqqqqqqbb]cc	chr1:156352503-156352751(+)$1	248	120	140	14.1249
d[a[cccqqqqqqqqccc]a	chr18:77805918-77806254(+)$1	336	155	175	15.1355
cc!!cccqqqqqqqqccc22	chr1:156352551-156352761(+)$1	210	26	46	15.2258
ffff[bbqqqqqqqqbbfff	chr11:47738235-47738472(-)$1	237	203	223	13.4962
(dddd[aqqqqqqqqa22dd	chr17:1680647-1680899(+)$1	252	115	135	12.9633
ffff[bbqqqqqqqqbb]ff	chr9:117063463-117063669(+)$1	206	82	102	13.6226
ddd!!bbqqqqqqqqbb22d	chr16:66977846-66978099(+)$1	253	218	238	13.5572
ff!!cccqqqqqqqqccc55	chr14:24105596-24105798(+)$1	202	75	95	13.9001
cc[ddddqqqqqqqqddddc	chr17:7474854-7475111(+)$1	257	197	217	14.7455
iiiiiiiqqqqqqqqiiiii	chr16:31501887-31502112(-)$1	225	28	48	14.7228
cc[ddddqqqqqqqqddddc	chr3:49052865-49053116(+)$1	251	148	168	14.7455
###ddddqqqqqqqqdddd3	chr6:33219536-33219787(-)$1	251	132	152	14.7458
###ddddqqqqqqqqddddc	chr6:41754673-41754915(+)$1	242	172	192	14.5576
gggggggqqqqqqqqggggg	chr14:20925974-20926287(-)$1	313	26	46	14.5434
#bb[cccqqqqqqqqccc22	chr10:72058974-72059256(-)$1	282	56	76	14.4823
ff[ddddqqqqqqqqdddd]	chr22:46752833-46753160(+)$1	327	120	140	14.7150
[bb[cccqqqqqqqqccc]b	chr20:33432899-33433262(-)$1	363	57	77	14.4691
eee[cccqqqqqqqqcccee	chr17:7321347-7321597(+)$1	250	147	167	14.9208
"""ddddqqqqqqqqdddd]	chr21:44473722-44474024(-)$1	302	191	211	14.7393
!ccc[bbqqqqqqqqbb22c	chr3:50112534-50112797(+)$1	263	166	186	13.8710
:a[ddddqqqqqqqqdddd]	chr3:184100730-184100960(+)$1	230	86	106	13.7428
cc[ddddqqqqqqqqddddc	chr17:7321900-7322146(+)$1	246	86	106	14.7455
cc[ddddqqqqqqqqdddd2	chr16:89805006-89805216(-)$1	210	111	131	14.7116
iiiiiiiqqqqqqqqiiiii	chr19:13254958-13255267(-)$1	309	118	138	14.7228
fffddddqqqqqqqqdddd:	chr21:46189933-46190187(-)$1	254	204	224	13.4828
fffffbbqqqqqqqqbb]ff	chr22:50882985-50883251(+)$1	266	116	136	13.4402
iiiiiiiqqqqqqqqiiiii	chr14:24114370-24114622(+)$1	252	2	22	14.7228
ff!!cccqqqqqqqqccc55	chr14:24105561-24105766(+)$1	205	110	130	13.9001
eeeeeeeqqqqqqqqeeeee	chr9:125084961-125085218(+)$1	257	82	102	13.8428
$$eeeeeqqqqqqqqeeeee	chr2:190636043-190636317(-)$1	274	166	186	13.5681
eeeecccqqqqqqqqccc22	chr1:40766698-40766967(-)$1	269	171	191	14.6892

#otherMatches

#Seq PSSM
CCGAGGCUUGUACCCGCUAG	chr19:1009893-1010196(-)$1	303	28	48	14.4301
CGCGGGCGUCCCAAGGCCAC	chr1:1228297-1228560(-)$1	263	170	190	14.6594
GGGUGGGUGGGGCCUCCCAC	chr2:97525528-97525808(-)$1	280	81	101	14.5434
UGACCCCAUGUAGGAGGGUG	chr15:75192449-75192730(-)$1	281	77	97	14.6594
AGGAGUUGUACGCCAAGCUC	chr16:88781867-88782129(-)$1	262	40	60	14.0236
UUCAGAGACGGAGCACCUGA	chr1:11721366-11721635(+)$1	269	202	222	14.1110
CAGGGCCAGUAGAGAGUGCC	chr14:75370045-75370307(+)$1	262	206	226	14.1625
GCCCUGUAGUUCUUGGCUGG	chr1:6695249-6695503(-)$1	254	88	108	13.7909
GCGUGAGACAGAGCCCUUGC	chr16:1496114-1496376(-)$1	262	98	118	13.7787
UGCUUUCAGAGCUCAGACAG	chr1:53364745-53364966(-)$1	221	180	200	13.9539
GCGCUCGAGGUCGUAUGAAC	chr1:1322522-1322752(-)$1	230	66	86	15.2219
ccccgcccAGAAGUCGGCGG	chr3:47050608-47050924(+)$1	316	256	276	13.3388
GUGGGGAUCUGGCUCUCGCU	chr3:184100580-184100825(+)$1	245	150	170	13.7909
GUGUGUCGCUCCCUGGUCCA	chr16:89977590-89977831(+)$1	241	148	168	13.9599
acuuugaagagacugucacc	chr14:24105682-24105898(+)$1	216	184	204	15.3130
UCUGGCCAAGUUUCAGGCCA	chr11:727458-727678(+)$1	220	125	145	14.1458
GGUUCCUGGAGGAGAAGGAC	chr7:32526662-32527002(-)$1	340	99	119	15.0750
AGGGCCAGGGAGGCAUGGCC	chr16:2821097-2821344(+)$1	247	60	80	12.9967
gaUAAACUUACCUGUGUUUA	chr17:80445758-80446081(+)$1	323	5	25	14.7228
CCACUUGCUCCCCGACAGGU	chr7:73007749-73007967(-)$1	218	172	192	14.5434
uuaagagcuguaacacucac	chr14:24105569-24105774(+)$1	205	102	122	13.9001
GGUGGAGUAUUUGAUUUCCG	chr9:117068749-117069051(+)$1	302	273	293	14.5434
GUGAGCUGCAGAUAAGGCUA	chr6:32135643-32135943(+)$1	300	164	184	14.7711
auaaaaaucuuuauuuuuuu	chr17:7162940-7163302(+)$1	362	287	307	14.7228
UGGAAGUUUUCUUUUGUUUC	chr19:19101693-19101933(-)$1	240	139	159	15.0400
ACGGUGGAUCUCUGCCCAGU	chr12:120565207-120565474(-)$1	267	215	235	15.2219
GCCCGGGGGACUUGACCGCU	chr8:145737538-145737780(-)$1	242	133	153	13.8841
uuaagagcuguaacacucac	chr14:24105553-24105761(+)$1	208	118	138	13.9001
UGAAAUUGAUAAUGAAGUUG	chr12:108962842-108963145(+)$1	303	108	128	14.8032
CAAAUAACAGAAAUUUUGUU	chr13:115070863-115071179(+)$1	316	206	226	14.0908
GGCAGUGCUGGUACCCACUG	chr19:19756024-19756421(-)$1	397	194	214	14.5434
GCACUUCUAGCAUCUGAAGG	chr3:49133311-49133552(-)$1	241	205	225	13.9084
GUUAAAGGGAGAGUACUUUA	chr15:65108237-65108486(-)$1	249	136	156	14.4477
CACGAAGGACGGGGACUCGG	chr11:295154-295417(+)$1	263	18	38	14.7027
ACACUGAUGUUUGCCUCUGU	chr1:156352503-156352751(+)$1	248	120	140	14.1249
CCCGGACACAGAGGAGUUGG	chr18:77805918-77806254(+)$1	336	155	175	15.1355
CAGUGCCACGUCACAGGCCA	chr1:156352551-156352761(+)$1	210	26	46	15.2258
UAUGUGAAUGUAUUCUCCAU	chr11:47738235-47738472(-)$1	237	203	223	13.4962
ACCCUAGAAGAAAACCCGAG	chr17:1680647-1680899(+)$1	252	115	135	12.9633
ggccgugguUUGUUGCAGGG	chr9:117063463-117063669(+)$1	206	82	102	13.6226
uucaGAAAGCAUUUAUUAAG	chr16:66977846-66978099(+)$1	253	218	238	13.5572
uuaagagcuguaacacucac	chr14:24105596-24105798(+)$1	202	75	95	13.9001
GGUGGAGCAGUCAUCCUCCC	chr17:7474854-7475111(+)$1	257	197	217	14.7455
GGAAAGGCAGCUUUAUUUUU	chr16:31501887-31502112(-)$1	225	28	48	14.7228
UGUGGCCUUAAAUGUGGCUC	chr3:49052865-49053116(+)$1	251	148	168	14.7455
CGACUUCGAGGGGAAGAAGG	chr6:33219536-33219787(-)$1	251	132	152	14.7458
GACGCACUGCACCAUGUGCU	chr6:41754673-41754915(+)$1	242	172	192	14.5576
CCCCACAUUGUGUCCUGUGG	chr14:20925974-20926287(-)$1	313	26	46	14.5434
agcacuuuagaguuugagaa	chr10:72058974-72059256(-)$1	282	56	76	14.4823
CGGCUGGUGAGCAGUCCAGG	chr22:46752833-46753160(+)$1	327	120	140	14.7150
CGAAGGACCAACAACUUCAU	chr20:33432899-33433262(-)$1	363	57	77	14.4691
CUGUGGGGAUUUGUACCCCA	chr17:7321347-7321597(+)$1	250	147	167	14.9208
CAUGGCUUCCUAAAUGGCCC	chr21:44473722-44474024(-)$1	302	191	211	14.7393
ACUGGCUGGAGGAAAGGGAC	chr3:50112534-50112797(+)$1	263	166	186	13.8710
CUGAGGUGCUGCCCAACCUG	chr3:184100730-184100960(+)$1	230	86	106	13.7428
GGCAGGUGAGCACAGACUUC	chr17:7321900-7322146(+)$1	246	86	106	14.7455
UCGUGGGGACUGCGACCCAG	chr16:89805006-89805216(-)$1	210	111	131	14.7116
UAGGAGGAGAGGGUCCCUCC	chr19:13254958-13255267(-)$1	309	118	138	14.7228
CCAGGCUGGGGACAGAGCCC	chr21:46189933-46190187(-)$1	254	204	224	13.4828
UUGCACUUUGUAUCCAGCUG	chr22:50882985-50883251(+)$1	266	116	136	13.4402
GCAGGAAUCGUGUCCUUCCU	chr14:24114370-24114622(+)$1	252	2	22	14.7228
uuaagagcuguaacacucac	chr14:24105561-24105766(+)$1	205	110	130	13.9001
GGGAACACUCAGACAUGUUC	chr9:125084961-125085218(+)$1	257	82	102	13.8428
UUGUGUUAAGAAAAGAACAU	chr2:190636043-190636317(-)$1	274	166	186	13.5681
UGGGUGGACAUGCACCCAUC	chr1:40766698-40766967(-)$1	269	171	191	14.6892

#DB
(((.(((........)))..	chr19:1009893-1010196(-)$1	1	28	48	14.4301
(((((((........))).)	chr1:1228297-1228560(-)$1	1	170	190	14.6594
(((((((........)))))	chr2:97525528-97525808(-)$1	1	81	101	14.5434
(((((((........))).)	chr15:75192449-75192730(-)$1	1	77	97	14.6594
(.(((((........)))))	chr16:88781867-88782129(-)$1	1	40	60	14.0236
(((((.(........)))))	chr1:11721366-11721635(+)$1	1	202	222	14.1110
.((((((........).)))	chr14:75370045-75370307(+)$1	1	206	226	14.1625
((((.((........)).))	chr1:6695249-6695503(-)$1	1	88	108	13.7909
))(((((........)))))	chr16:1496114-1496376(-)$1	1	98	118	13.7787
((((.((........)).))	chr1:53364745-53364966(-)$1	1	180	200	13.9539
(((.(((........))).)	chr1:1322522-1322752(-)$1	1	66	86	15.2219
.((((((........)))))	chr3:47050608-47050924(+)$1	1	256	276	13.3388
((((.((........)).))	chr3:184100580-184100825(+)$1	1	150	170	13.7909
(((.(.(........).)))	chr16:89977590-89977831(+)$1	1	148	168	13.9599
(...(((........)))..	chr14:24105682-24105898(+)$1	1	184	204	15.3130
..(((((........)))))	chr11:727458-727678(+)$1	1	125	145	14.1458
(((.(((........)))))	chr7:32526662-32527002(-)$1	1	99	119	15.0750
(((((((........)))))	chr16:2821097-2821344(+)$1	1	60	80	12.9967
(((((((........)))))	chr17:80445758-80446081(+)$1	1	5	25	14.7228
(((((((........)))))	chr7:73007749-73007967(-)$1	1	172	192	14.5434
((..(((........)))..	chr14:24105569-24105774(+)$1	1	102	122	13.9001
(((((((........)))))	chr9:117068749-117069051(+)$1	1	273	293	14.5434
(..((((........)))).	chr6:32135643-32135943(+)$1	1	164	184	14.7711
(((((((........)))))	chr17:7162940-7163302(+)$1	1	287	307	14.7228
(((((((........)))))	chr19:19101693-19101933(-)$1	1	139	159	15.0400
(((.(((........))).)	chr12:120565207-120565474(-)$1	1	215	235	15.2219
((...((........)))))	chr8:145737538-145737780(-)$1	1	133	153	13.8841
((..(((........)))..	chr14:24105553-24105761(+)$1	1	118	138	13.9001
(..((((........)))).	chr12:108962842-108963145(+)$1	1	108	128	14.8032
(.(((((........)))))	chr13:115070863-115071179(+)$1	1	206	226	14.0908
(((((((........)))))	chr19:19756024-19756421(-)$1	1	194	214	14.5434
((.((((........)))))	chr3:49133311-49133552(-)$1	1	205	225	13.9084
(((((((........)))).	chr15:65108237-65108486(-)$1	1	136	156	14.4477
(.(((.(........)))))	chr11:295154-295417(+)$1	1	18	38	14.7027
.(((.((........)).))	chr1:156352503-156352751(+)$1	1	120	140	14.1249
(.(.(((........))).)	chr18:77805918-77806254(+)$1	1	155	175	15.1355
((..(((........)))..	chr1:156352551-156352761(+)$1	1	26	46	15.2258
((((.((........)))))	chr11:47738235-47738472(-)$1	1	203	223	13.4962
.((((.(........)..))	chr17:1680647-1680899(+)$1	1	115	135	12.9633
((((.((........)).))	chr9:117063463-117063669(+)$1	1	82	102	13.6226
(((..((........))..)	chr16:66977846-66978099(+)$1	1	218	238	13.5572
((..(((........)))..	chr14:24105596-24105798(+)$1	1	75	95	13.9001
((.((((........)))))	chr17:7474854-7475111(+)$1	1	197	217	14.7455
(((((((........)))))	chr16:31501887-31502112(-)$1	1	28	48	14.7228
((.((((........)))))	chr3:49052865-49053116(+)$1	1	148	168	14.7455
...((((........)))).	chr6:33219536-33219787(-)$1	1	132	152	14.7458
...((((........)))))	chr6:41754673-41754915(+)$1	1	172	192	14.5576
(((((((........)))))	chr14:20925974-20926287(-)$1	1	26	46	14.5434
.((.(((........)))..	chr10:72058974-72059256(-)$1	1	56	76	14.4823
((.((((........)))).	chr22:46752833-46753160(+)$1	1	120	140	14.7150
.((.(((........))).)	chr20:33432899-33433262(-)$1	1	57	77	14.4691
(((.(((........)))))	chr17:7321347-7321597(+)$1	1	147	167	14.9208
...((((........)))).	chr21:44473722-44474024(-)$1	1	191	211	14.7393
.(((.((........))..)	chr3:50112534-50112797(+)$1	1	166	186	13.8710
.(.((((........)))).	chr3:184100730-184100960(+)$1	1	86	106	13.7428
((.((((........)))))	chr17:7321900-7322146(+)$1	1	86	106	14.7455
((.((((........)))).	chr16:89805006-89805216(-)$1	1	111	131	14.7116
(((((((........)))))	chr19:13254958-13255267(-)$1	1	118	138	14.7228
)))((((........)))).	chr21:46189933-46190187(-)$1	1	204	224	13.4828
(((((((........)).))	chr22:50882985-50883251(+)$1	1	116	136	13.4402
(((((((........)))))	chr14:24114370-24114622(+)$1	1	2	22	14.7228
((..(((........)))..	chr14:24105561-24105766(+)$1	1	110	130	13.9001
))(((((........)))))	chr9:125084961-125085218(+)$1	1	82	102	13.8428
..(((((........)))))	chr2:190636043-190636317(-)$1	1	166	186	13.5681
(((((((........)))..	chr1:40766698-40766967(-)$1	1	171	191	14.6892

#PSSM
f : 0.15	c : 0.15	d : 0.13	e : 0.10	g : 0.10	i : 0.07	! : 0.04	[ : 0.04	# : 0.04	b : 0.03	= : 0.01	h : 0.01	( : 0.01	" : 0.01	: : 0.01	$ : 0.01	
f : 0.16	c : 0.15	d : 0.13	e : 0.10	g : 0.07	i : 0.07	b : 0.06	[ : 0.06	! : 0.04	" : 0.03	# : 0.03	= : 0.01	a : 0.01	$ : 0.01	
e : 0.18	d : 0.10	! : 0.10	[ : 0.10	c : 0.09	f : 0.09	g : 0.07	i : 0.07	b : 0.04	" : 0.04	# : 0.03	= : 0.01	a : 0.01	
d : 0.29	e : 0.15	[ : 0.13	! : 0.09	g : 0.07	f : 0.07	i : 0.07	c : 0.04	" : 0.03	= : 0.01	
c : 0.27	d : 0.23	e : 0.12	[ : 0.10	g : 0.07	i : 0.07	f : 0.04	a : 0.01	= : 0.01	" : 0.01	! : 0.01	
c : 0.26	d : 0.21	b : 0.15	e : 0.10	g : 0.07	i : 0.07	[ : 0.06	f : 0.03	= : 0.01	
c : 0.26	d : 0.21	b : 0.15	e : 0.09	g : 0.07	a : 0.07	i : 0.07	f : 0.03	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.26	d : 0.21	b : 0.15	e : 0.09	g : 0.07	a : 0.07	i : 0.07	f : 0.03	= : 0.01	
c : 0.27	d : 0.21	b : 0.15	e : 0.10	g : 0.07	i : 0.07	] : 0.03	f : 0.03	= : 0.01	2 : 0.01	
c : 0.27	d : 0.23	e : 0.12	] : 0.09	g : 0.07	i : 0.07	f : 0.04	2 : 0.04	a : 0.01	= : 0.01	
d : 0.29	e : 0.15	2 : 0.09	] : 0.09	g : 0.07	f : 0.07	i : 0.07	5 : 0.06	c : 0.04	4 : 0.01	= : 0.01	
e : 0.15	c : 0.13	d : 0.12	2 : 0.09	g : 0.09	f : 0.07	i : 0.07	5 : 0.06	] : 0.06	3 : 0.03	b : 0.03	4 : 0.01	= : 0.01	a : 0.01	: : 0.01	

#score	930.5562041699326
#seq	65
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_CDS_m3_run1.txt

#BEAR
BBCCC~~~~HHHHHHH	chr15:67391105-67391425(+)$1	320	264	280	12.9830
BBEEEEEYYGGGGGGG	chr20:32251549-32251799(-)$1	250	233	249	14.5943
:BB}BB}A}HHHHHHH	chr4:140640572-140640837(+)$1	265	115	131	12.7833
:BB}BB}A}GGGGGGG	chr4:140640515-140640772(+)$1	257	172	188	13.6630
DDDEEEEE}GGGGGGG	chr13:98828491-98828716(+)$1	225	199	215	14.5108
ccEEEEEYYGGGGGGG	chr11:66393897-66394139(+)$1	242	219	235	13.2040
DDDEEEEE}GGGGGGG	chr13:98828521-98828768(+)$1	247	169	185	14.5108
eEEEEEZZZGGGGGGG	chr20:32251316-32251596(-)$1	280	263	279	13.5181
DDDDYYBB}GGGGGGG	chr20:32251251-32251486(-)$1	235	170	186	14.2257

#otherMatches

#Seq PSSM
CCCAUGAUAAUUCUCC	chr15:67391105-67391425(+)$1	320	264	280	12.9830
GCCAGCUCAGAGCUGC	chr20:32251549-32251799(-)$1	250	233	249	14.5943
UGCUGCUGUGCUGGGG	chr4:140640572-140640837(+)$1	265	115	131	12.7833
UGCUGCUGUGCUGGGG	chr4:140640515-140640772(+)$1	257	172	188	13.6630
ACUGGGUUUUGGAAGG	chr13:98828491-98828716(+)$1	225	199	215	14.5108
CUGGCUACCAGCGCCG	chr11:66393897-66394139(+)$1	242	219	235	13.2040
ACUGGGUUUUGGAAGG	chr13:98828521-98828768(+)$1	247	169	185	14.5108
GGGUGGAACAGGGGCG	chr20:32251316-32251596(-)$1	280	263	279	13.5181
GAGGCGGGAGAGCGCG	chr20:32251251-32251486(-)$1	235	170	186	14.2257

#DB
)))))....)))))))	chr15:67391105-67391425(+)$1	1	264	280	12.9830
)))))))..)))))))	chr20:32251549-32251799(-)$1	1	233	249	14.5943
.)).)).).)))))))	chr4:140640572-140640837(+)$1	1	115	131	12.7833
.)).)).).)))))))	chr4:140640515-140640772(+)$1	1	172	188	13.6630
)))))))).)))))))	chr13:98828491-98828716(+)$1	1	199	215	14.5108
)))))))..)))))))	chr11:66393897-66394139(+)$1	1	219	235	13.2040
)))))))).)))))))	chr13:98828521-98828768(+)$1	1	169	185	14.5108
))))))...)))))))	chr20:32251316-32251596(-)$1	1	263	279	13.5181
))))..)).)))))))	chr20:32251251-32251486(-)$1	1	170	186	14.2257

#PSSM
D : 0.33	B : 0.22	: : 0.22	c : 0.11	e : 0.11	
B : 0.44	D : 0.33	c : 0.11	E : 0.11	
E : 0.33	D : 0.33	B : 0.22	C : 0.11	
E : 0.55	} : 0.22	C : 0.11	D : 0.11	
E : 0.55	B : 0.22	C : 0.11	Y : 0.11	
E : 0.55	B : 0.22	~ : 0.11	Y : 0.11	
E : 0.44	} : 0.22	~ : 0.11	Z : 0.11	B : 0.11	
Y : 0.22	A : 0.22	E : 0.22	~ : 0.11	Z : 0.11	B : 0.11	
} : 0.55	Y : 0.22	~ : 0.11	Z : 0.11	
G : 0.77	H : 0.22	
G : 0.77	H : 0.22	
G : 0.77	H : 0.22	
G : 0.77	H : 0.22	
G : 0.77	H : 0.22	
G : 0.77	H : 0.22	
G : 0.77	H : 0.22	

#score	123.99343871860005
#seq	9
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_CDS_m2_run1.txt

#BEAR
iiiiiiqqqqqqqqiiiiii	chr14:24900752-24900993(+)$1	241	179	199	14.6865
ffffffqqqqqqqqffffff	chr14:105477798-105478071(-)$1	273	172	192	14.6283
dd!!bbqqqqqqqqbb]ddd	chr22:29191377-29191626(-)$1	249	181	201	13.2547
[eeeeeqqqqqqqqeeeee]	chr12:89744427-89744675(-)$1	248	139	159	14.6913
c[ddddqqqqqqqqdddd]c	chr21:34924876-34925181(+)$1	305	192	212	14.1495
eea[bbqqqqqqqqbb22a]	chr6:158516591-158516832(+)$1	241	112	132	13.3654
ddddddqqqqqqqqdddd]d	chr17:56434946-56435193(-)$1	247	28	48	13.4315
ffffffqqqqqqqqffffff	chr3:30713131-30713384(+)$1	253	9	29	14.6283
ggggggqqqqqqqqgggggg	chr3:32933062-32933333(+)$1	271	249	269	15.0055
[eeeeeqqqqqqqqeeeee]	chr16:67197230-67197530(+)$1	300	77	97	14.6913
h[a[bbqqqqqqqqbb]a]h	chr6:139694232-139694485(-)$1	253	115	135	13.7208
bb[cccqqqqqqqqcccbb]	chr3:49049922-49050152(+)$1	230	90	110	14.3975
[eeeeeqqqqqqqqeeeeef	chr16:87364977-87365237(-)$1	260	25	45	14.6212
beeeeeqqqqqqqqeeeee]	chr20:31021509-31021740(+)$1	231	138	158	14.4419
ggggggqqqqqqqqgggggg	chr13:52549092-52549388(-)$1	296	182	202	15.0055
bbddddqqqqqqqqdddd]b	chr14:54417196-54417432(-)$1	236	139	159	13.3042
#eeeeeqqqqqqqqeeeee2	chr10:7791148-7791387(+)$1	239	210	230	14.3684
a[ddddqqqqqqqqdddd]a	chr20:52199172-52199414(-)$1	242	156	176	14.0735
c!!cccqqqqqqqqcccccc	chr20:30309406-30309640(-)$1	234	111	131	15.2556
eeecccqqqqqqqqcccbb[	chr14:69256491-69256753(-)$1	262	100	120	14.1419
"""cccqqqqqqqqccc22c	chr3:49050104-49050360(+)$1	256	154	174	15.0093
""ddddqqqqqqqqdddd22	chr22:21288303-21288593(+)$1	290	125	145	13.7510
ggggggqqqqqqqqgggggg	chr19:7677166-7677432(+)$1	266	1	21	15.0055
ffffffqqqqqqqqffffff	chr10:74034671-74034907(+)$1	236	128	148	14.6283
ffffffqqqqqqqqffffff	chr1:36752562-36752819(+)$1	257	2	22	14.6283
aeeeeeqqqqqqqqeeeee]	chr20:419185-419438(-)$1	253	80	100	14.5881
eeeeeaqqqqqqqqa]eeee	chr8:23291742-23292001(-)$1	259	96	116	14.1778
"""cccqqqqqqqqccceee	chr17:37618215-37618459(+)$1	244	115	135	15.2906
c!!cccqqqqqqqqccc22c	chr3:5024407-5024642(+)$1	235	92	112	15.0762
!a[cccqqqqqqqqccc]a]	chr14:24900986-24901243(+)$1	257	221	241	15.3924
ggggggqqqqqqqqgggggg	chrX:49126679-49126939(+)$1	260	103	123	15.0055
ffffffqqqqqqqqffffff	chr2:28634799-28635053(+)$1	254	216	236	14.6283
ffffffqqqqqqqqffffff	chr9:14775763-14776011(-)$1	248	143	163	14.6283
f[a[bbqqqqqqqqbb]a]f	chr16:11348855-11349091(-)$1	236	188	208	14.1243
d!!cccqqqqqqqqccc22d	chr1:169454855-169455109(-)$1	254	15	35	14.7015
ggggggqqqqqqqqgggggg	chr7:2577805-2578156(-)$1	351	207	227	15.0055
ffffffqqqqqqqqffffff	chr1:46751602-46751830(-)$1	228	139	159	14.6283
ee[cccqqqqqqqqccc]ee	chr8:11695928-11696193(+)$1	265	224	244	15.1422
ceeeeeqqqqqqqqeeeee2	chr2:98274866-98275117(-)$1	251	199	219	14.3404
bb[cccqqqqqqqqccc]bb	chr19:36223696-36223982(+)$1	286	85	105	14.3512
===[bbqqqqqqqqbb]===	chr20:307222-307498(+)$1	276	117	137	14.2891
"""cccqqqqqqqqcccggg	chr16:30455598-30455851(-)$1	253	186	206	15.4499
cc[cccqqqqqqqqcccccc	chr14:31598439-31598695(-)$1	256	202	222	15.0839
ffff[aqqqqqqqqa]ffff	chr10:74034543-74034793(+)$1	250	194	214	14.3494
ceeeeeqqqqqqqqeeeee]	chr20:52198201-52198442(-)$1	241	197	217	14.6034
ggggggqqqqqqqqgggggg	chr22:19838611-19838851(-)$1	240	152	172	15.0055
[eeeeeqqqqqqqqeeeeea	chr22:29191446-29191687(-)$1	241	61	81	14.5177
bb[cccqqqqqqqqcccbb]	chr3:49049842-49050122(+)$1	280	170	190	14.3975
e!!cccqqqqqqqqccc333	chr12:12870865-12871108(+)$1	243	13	33	15.3932
bb!!bbqqqqqqqqbb]bb2	chr2:74653292-74653562(-)$1	270	49	69	12.9737
ggggggqqqqqqqqgggggg	chr4:69682089-69682328(+)$1	239	99	119	15.0055
ffffffqqqqqqqqffffff	chr17:38285678-38285954(+)$1	276	171	191	14.6283
c[ddddqqqqqqqqdddd]c	chr19:10224621-10224869(+)$1	248	92	112	14.1495
cc[cccqqqqqqqqccc]cc	chr17:75398035-75398344(+)$1	309	134	154	15.2040
ffffffqqqqqqqqffffff	chr20:3145181-3145421(-)$1	240	192	212	14.6283
"""cccqqqqqqqqccceee	chr17:37618259-37618525(+)$1	266	71	91	15.2906
ff[cccqqqqqqqqccc]ff	chr6:3456391-3456653(-)$1	262	19	39	15.3930
'eeeeeqqqqqqqqeeeeee	chr12:103248850-103249116(-)$1	266	122	142	13.8302
b"""bbqqqqqqqqbb333b	chr6:30711616-30711842(-)$1	226	142	162	13.6010
ccddddqqqqqqqqdddd]c	chr8:103663691-103663976(-)$1	285	121	141	13.9374
c[ddddqqqqqqqqddddcc	chr1:245025679-245025930(-)$1	251	190	210	13.9898
ffffffqqqqqqqqffffff	chr12:49420775-49421051(-)$1	276	63	83	14.6283
ggggggqqqqqqqqgggggg	chr19:18499159-18499361(+)$1	202	57	77	15.0055
ffffffqqqqqqqqffffff	chr9:140137455-140137687(+)$1	232	91	111	14.6283
======qqqqqqqq======	chr8:128753097-128753347(+)$1	250	210	230	15.0313
FFFcccqqqqqqqqccceee	chr17:38279058-38279306(+)$1	248	77	97	13.8258
"eeeeeqqqqqqqqeeeeee	chr16:30544136-30544411(-)$1	275	41	61	14.4913
"""cccqqqqqqqqccc]dd	chr2:138721965-138722290(+)$1	325	195	215	15.0169

#otherMatches

#Seq PSSM
UCAGUGUACUGGAGUGCUGA	chr14:24900752-24900993(+)$1	241	179	199	14.6865
AGGGUCCAGUUUCUGACCUU	chr14:105477798-105478071(-)$1	273	172	192	14.6283
GGAAGCACCUCUCAGCCCCU	chr22:29191377-29191626(-)$1	249	181	201	13.2547
ACCAACUUGGACGUGUUGGA	chr12:89744427-89744675(-)$1	248	139	159	14.6913
GAGGGUCCAGCAUUGCCCAC	chr21:34924876-34925181(+)$1	305	192	212	14.1495
CCCCCGGAGACAAGCGUUGA	chr6:158516591-158516832(+)$1	241	112	132	13.3654
GGGGGUCCCUCCGAGCCCAC	chr17:56434946-56435193(-)$1	247	28	48	13.4315
AGCAAUCCUGACUUGUUGCU	chr3:30713131-30713384(+)$1	253	9	29	14.6283
CCUAGGUUUCUGUGUUUGGG	chr3:32933062-32933333(+)$1	271	249	269	15.0055
UGCCCAACGAAGCCUGGGUC	chr16:67197230-67197530(+)$1	300	77	97	14.6913
GACCGCAUCAAGGAGCUGCC	chr6:139694232-139694485(-)$1	253	115	135	13.7208
GUACACUCAAGGCUGUGACU	chr3:49049922-49050152(+)$1	230	90	110	14.3975
UCUUGCGGCACAGAGCGGGG	chr16:87364977-87365237(-)$1	260	25	45	14.6212
UAACACAAUUGAAAGUGUUC	chr20:31021509-31021740(+)$1	231	138	158	14.4419
CCUGGGCCCUUCUUCUCAGG	chr13:52549092-52549388(-)$1	296	182	202	15.0055
GCAGCCAAACUAUGGGCUAG	chr14:54417196-54417432(-)$1	236	139	159	13.3042
AUAUUCUUCGGUUUGAAUAA	chr10:7791148-7791387(+)$1	239	210	230	14.3684
UGCCUUGUCAAUGAAAGGGA	chr20:52199172-52199414(-)$1	242	156	176	14.0735
CGGAUCGCAGCUUGGAUGGC	chr20:30309406-30309640(-)$1	234	111	131	15.2556
CUGGGUUUCCCAGUgccgcu	chr14:69256491-69256753(-)$1	262	100	120	14.1419
AGACCCUGUUUCCUGGGAAG	chr3:49050104-49050360(+)$1	256	154	174	15.0093
CAGCAAUCACCCCUUUGCCA	chr22:21288303-21288593(+)$1	290	125	145	13.7510
AGCUCGGAGAUGAGUGAGCU	chr19:7677166-7677432(+)$1	266	1	21	15.0055
CUCUGGCCCAAGAUCCAGGG	chr10:74034671-74034907(+)$1	236	128	148	14.6283
GGGAGCGAAGCCCAGCUCUC	chr1:36752562-36752819(+)$1	257	2	22	14.6283
CCAAGGACCAACCGCUUUGU	chr20:419185-419438(-)$1	253	80	100	14.5881
CCUUGCAAGUUUACGACAAG	chr8:23291742-23292001(-)$1	259	96	116	14.1778
AAUUCAGAGAGACAUGGGGG	chr17:37618215-37618459(+)$1	244	115	135	15.2906
UUCGGAUUUUUCUUUCCCCA	chr3:5024407-5024642(+)$1	235	92	112	15.0762
AGCAAGGGGAGACACUUACG	chr14:24900986-24901243(+)$1	257	221	241	15.3924
GGUGCCGGGGUGUGGGUGCC	chrX:49126679-49126939(+)$1	260	103	123	15.0055
GAGGACAGCCCCUCGUCCUC	chr2:28634799-28635053(+)$1	254	216	236	14.6283
UUUCAUGGCCACAGAUGGGA	chr9:14775763-14776011(-)$1	248	143	163	14.6283
GACUGCCUCUUCGAGCUGCU	chr16:11348855-11349091(-)$1	236	188	208	14.1243
ACUCGCGGUUACAAGUGCCU	chr1:169454855-169455109(-)$1	254	15	35	14.7015
GGGCAGCCCCAACACUGCCU	chr7:2577805-2578156(-)$1	351	207	227	15.0055
GGGUCCCUCUUAUUGGGCUC	chr1:46751602-46751830(-)$1	228	139	159	14.6283
AGUGGAUUUACUUUUUUUCU	chr8:11695928-11696193(+)$1	265	224	244	15.1422
AGUUUGAGGUUGUCCGGACA	chr2:98274866-98275117(-)$1	251	199	219	14.3404
CGGAAAUUGUGGAUUUUGUG	chr19:36223696-36223982(+)$1	286	85	105	14.3512
CUGCCCCCUGGCCCGGCCGG	chr20:307222-307498(+)$1	276	117	137	14.2891
UUGUCCACAAUCACGGAUGG	chr16:30455598-30455851(-)$1	253	186	206	15.4499
AGCUUGGUGAAAAACAACUG	chr14:31598439-31598695(-)$1	256	202	222	15.0839
CACUCGACCCCAGCCUGGUG	chr10:74034543-74034793(+)$1	250	194	214	14.3494
CCACUCACUGCUCCGAGUGC	chr20:52198201-52198442(-)$1	241	197	217	14.6034
UGGGUUCUGAACACAGCCCA	chr22:19838611-19838851(-)$1	240	152	172	15.0055
AGGUCUACCCAGAAGGACCC	chr22:29191446-29191687(-)$1	241	61	81	14.5177
GUACACUCAAGGCUGUGACU	chr3:49049842-49050122(+)$1	280	170	190	14.3975
GUGGACCACGAAGAGUUAAC	chr12:12870865-12871108(+)$1	243	13	33	15.3932
CGAACCUUUUCCCUGGAUGC	chr2:74653292-74653562(-)$1	270	49	69	12.9737
CUUAUUUACCCUGUGGUGAG	chr4:69682089-69682328(+)$1	239	99	119	15.0055
UCCUCUCCAAAGAAGGAGGA	chr17:38285678-38285954(+)$1	276	171	191	14.6283
GACCCAAGCACGCCUGGGCC	chr19:10224621-10224869(+)$1	248	92	112	14.1495
GUCGAGACACCCAACUCCAC	chr17:75398035-75398344(+)$1	309	134	154	15.2040
GCAGCUGGAGCGCAGGCUGC	chr20:3145181-3145421(-)$1	240	192	212	14.6283
AAUUCAGAGAGACAUGGGGG	chr17:37618259-37618525(+)$1	266	71	91	15.2906
CCCCCACUGCAUCCUGGAGG	chr6:3456391-3456653(-)$1	262	19	39	15.3930
UUUUUCCACUUCUUGAAAAG	chr12:103248850-103249116(-)$1	266	122	142	13.8302
GCACUCCCCAAAAAGAAUCC	chr6:30711616-30711842(-)$1	226	142	162	13.6010
CUCAGAGACGGUCAUCUGCA	chr8:103663691-103663976(-)$1	285	121	141	13.9374
AAUUAUGAAAUGCGGUGAUG	chr1:245025679-245025930(-)$1	251	190	210	13.9898
UUGGCACCUUCUCCUGCCAG	chr12:49420775-49421051(-)$1	276	63	83	14.6283
GUCGUGGGACGUGACACGAC	chr19:18499159-18499361(+)$1	202	57	77	15.0055
AUGUUUGAUGCCAAGAACAU	chr9:140137455-140137687(+)$1	232	91	111	14.6283
AGUCUUGAGACUGAAAGAUU	chr8:128753097-128753347(+)$1	250	210	230	15.0313
cAGCAGGAAGAGAGCUGGGG	chr17:38279058-38279306(+)$1	248	77	97	13.8258
AAGCCCCCUUUGCCGGGUUG	chr16:30544136-30544411(-)$1	275	41	61	14.4913
GAAUUCAUGGACAAGAAGCU	chr2:138721965-138722290(+)$1	325	195	215	15.0169

#DB
((((((........))))))	chr14:24900752-24900993(+)$1	1	179	199	14.6865
((((((........))))))	chr14:105477798-105478071(-)$1	1	172	192	14.6283
((..((........)).)))	chr22:29191377-29191626(-)$1	1	181	201	13.2547
.(((((........))))).	chr12:89744427-89744675(-)$1	1	139	159	14.6913
(.((((........)))).)	chr21:34924876-34925181(+)$1	1	192	212	14.1495
(((.((........))..).	chr6:158516591-158516832(+)$1	1	112	132	13.3654
((((((........)))).)	chr17:56434946-56435193(-)$1	1	28	48	13.4315
((((((........))))))	chr3:30713131-30713384(+)$1	1	9	29	14.6283
((((((........))))))	chr3:32933062-32933333(+)$1	1	249	269	15.0055
.(((((........))))).	chr16:67197230-67197530(+)$1	1	77	97	14.6913
(.(.((........)).).)	chr6:139694232-139694485(-)$1	1	115	135	13.7208
((.(((........))))).	chr3:49049922-49050152(+)$1	1	90	110	14.3975
.(((((........))))))	chr16:87364977-87365237(-)$1	1	25	45	14.6212
((((((........))))).	chr20:31021509-31021740(+)$1	1	138	158	14.4419
((((((........))))))	chr13:52549092-52549388(-)$1	1	182	202	15.0055
((((((........)))).)	chr14:54417196-54417432(-)$1	1	139	159	13.3042
.(((((........))))).	chr10:7791148-7791387(+)$1	1	210	230	14.3684
(.((((........)))).)	chr20:52199172-52199414(-)$1	1	156	176	14.0735
(..(((........))))))	chr20:30309406-30309640(-)$1	1	111	131	15.2556
)))(((........)))((.	chr14:69256491-69256753(-)$1	1	100	120	14.1419
...(((........)))..)	chr3:49050104-49050360(+)$1	1	154	174	15.0093
..((((........))))..	chr22:21288303-21288593(+)$1	1	125	145	13.7510
((((((........))))))	chr19:7677166-7677432(+)$1	1	1	21	15.0055
((((((........))))))	chr10:74034671-74034907(+)$1	1	128	148	14.6283
((((((........))))))	chr1:36752562-36752819(+)$1	1	2	22	14.6283
((((((........))))).	chr20:419185-419438(-)$1	1	80	100	14.5881
((((((........).))))	chr8:23291742-23292001(-)$1	1	96	116	14.1778
...(((........))))))	chr17:37618215-37618459(+)$1	1	115	135	15.2906
(..(((........)))..)	chr3:5024407-5024642(+)$1	1	92	112	15.0762
.(.(((........))).).	chr14:24900986-24901243(+)$1	1	221	241	15.3924
((((((........))))))	chrX:49126679-49126939(+)$1	1	103	123	15.0055
((((((........))))))	chr2:28634799-28635053(+)$1	1	216	236	14.6283
((((((........))))))	chr9:14775763-14776011(-)$1	1	143	163	14.6283
(.(.((........)).).)	chr16:11348855-11349091(-)$1	1	188	208	14.1243
(..(((........)))..)	chr1:169454855-169455109(-)$1	1	15	35	14.7015
((((((........))))))	chr7:2577805-2578156(-)$1	1	207	227	15.0055
((((((........))))))	chr1:46751602-46751830(-)$1	1	139	159	14.6283
((.(((........))).))	chr8:11695928-11696193(+)$1	1	224	244	15.1422
((((((........))))).	chr2:98274866-98275117(-)$1	1	199	219	14.3404
((.(((........))).))	chr19:36223696-36223982(+)$1	1	85	105	14.3512
(((.((........)).)))	chr20:307222-307498(+)$1	1	117	137	14.2891
...(((........))))))	chr16:30455598-30455851(-)$1	1	186	206	15.4499
((.(((........))))))	chr14:31598439-31598695(-)$1	1	202	222	15.0839
((((.(........).))))	chr10:74034543-74034793(+)$1	1	194	214	14.3494
((((((........))))).	chr20:52198201-52198442(-)$1	1	197	217	14.6034
((((((........))))))	chr22:19838611-19838851(-)$1	1	152	172	15.0055
.(((((........))))))	chr22:29191446-29191687(-)$1	1	61	81	14.5177
((.(((........))))).	chr3:49049842-49050122(+)$1	1	170	190	14.3975
(..(((........)))...	chr12:12870865-12871108(+)$1	1	13	33	15.3932
((..((........)).)).	chr2:74653292-74653562(-)$1	1	49	69	12.9737
((((((........))))))	chr4:69682089-69682328(+)$1	1	99	119	15.0055
((((((........))))))	chr17:38285678-38285954(+)$1	1	171	191	14.6283
(.((((........)))).)	chr19:10224621-10224869(+)$1	1	92	112	14.1495
((.(((........))).))	chr17:75398035-75398344(+)$1	1	134	154	15.2040
((((((........))))))	chr20:3145181-3145421(-)$1	1	192	212	14.6283
...(((........))))))	chr17:37618259-37618525(+)$1	1	71	91	15.2906
((.(((........))).))	chr6:3456391-3456653(-)$1	1	19	39	15.3930
.(((((........))))))	chr12:103248850-103249116(-)$1	1	122	142	13.8302
(...((........))...)	chr6:30711616-30711842(-)$1	1	142	162	13.6010
((((((........)))).)	chr8:103663691-103663976(-)$1	1	121	141	13.9374
(.((((........))))))	chr1:245025679-245025930(-)$1	1	190	210	13.9898
((((((........))))))	chr12:49420775-49421051(-)$1	1	63	83	14.6283
((((((........))))))	chr19:18499159-18499361(+)$1	1	57	77	15.0055
((((((........))))))	chr9:140137455-140137687(+)$1	1	91	111	14.6283
((((((........))))))	chr8:128753097-128753347(+)$1	1	210	230	15.0313
((((((........)))(((	chr17:38279058-38279306(+)$1	1	77	97	13.8258
.(((((........))))))	chr16:30544136-30544411(-)$1	1	41	61	14.4913
...(((........))).))	chr2:138721965-138722290(+)$1	1	195	215	15.0169

#PSSM
f : 0.20	c : 0.14	g : 0.11	b : 0.10	" : 0.10	e : 0.07	[ : 0.05	d : 0.04	a : 0.02	= : 0.02	i : 0.01	h : 0.01	# : 0.01	! : 0.01	' : 0.01	F : 0.01	
e : 0.22	f : 0.19	g : 0.11	" : 0.10	[ : 0.08	b : 0.07	! : 0.05	c : 0.04	d : 0.02	= : 0.02	i : 0.01	a : 0.01	F : 0.01	
e : 0.19	f : 0.17	d : 0.11	g : 0.11	[ : 0.11	! : 0.08	" : 0.08	a : 0.04	= : 0.02	i : 0.01	F : 0.01	
c : 0.27	f : 0.17	e : 0.17	d : 0.11	g : 0.11	[ : 0.05	! : 0.02	i : 0.01	" : 0.01	= : 0.01	
c : 0.27	e : 0.17	f : 0.16	d : 0.11	g : 0.11	b : 0.10	i : 0.01	[ : 0.01	= : 0.01	
c : 0.27	f : 0.16	e : 0.16	d : 0.11	g : 0.11	b : 0.10	a : 0.02	i : 0.01	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.27	f : 0.16	e : 0.16	d : 0.11	g : 0.11	b : 0.10	a : 0.02	i : 0.01	= : 0.01	
c : 0.27	f : 0.16	e : 0.16	d : 0.11	g : 0.11	b : 0.10	] : 0.02	i : 0.01	= : 0.01	
c : 0.27	f : 0.17	e : 0.17	d : 0.11	g : 0.11	] : 0.07	i : 0.01	2 : 0.01	3 : 0.01	= : 0.01	
e : 0.22	f : 0.17	d : 0.13	g : 0.13	] : 0.08	2 : 0.05	b : 0.05	a : 0.02	c : 0.02	= : 0.02	3 : 0.02	i : 0.01	
e : 0.23	f : 0.19	g : 0.13	] : 0.11	b : 0.07	c : 0.05	2 : 0.05	d : 0.02	a : 0.02	= : 0.02	3 : 0.02	i : 0.01	
f : 0.22	] : 0.13	c : 0.13	g : 0.13	e : 0.10	d : 0.05	2 : 0.05	b : 0.04	a : 0.02	= : 0.02	i : 0.01	h : 0.01	[ : 0.01	3 : 0.01	

#score	988.317369891525
#seq	68
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_UTR_m1_run1.txt

#BEAR
d"""ffffff[auuuuuuuuuuuuaffffff555	chr12:67704695-67704962(+)$1	267	27	61	21.2694
:ccc!!a^^^^^^^^^^^^^^^^^^^^^^^a22c	chr19:48245325-48245579(+)$1	254	171	205	21.6174
dbb!!eeeeeuuuuuuuuuuuueeeee22bb333	chr7:32919405-32919642(-)$1	237	17	51	22.4758
cc"""ffffffwwwwwwwwwwwwwwffffff22c	chr12:57909766-57909976(+)$1	210	17	51	23.8705
dd:iiiiiiiiiuuuuuuuuuuuuiiiiiiiiiF	chr3:140692446-140692706(+)$1	260	97	131	22.1842
===========vvvvvvvvvvvvv==========	chr6:150048181-150048446(-)$1	265	86	120	26.1123
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc22f	chr1:155884177-155884438(-)$1	261	60	94	21.0894
fff[a[eeeeevvvvvvvvvvvvveeeee]a]ff	chr17:65353533-65353804(-)$1	271	187	221	24.2724
gg"""eeeeewwwwwwwwwwwwwweeeeeggggg	chr12:53837060-53837306(+)$1	246	124	158	25.5986
ccdddddddd^^^^^^^^^^^^^^^^^^dddd]d	chr7:44839455-44839720(+)$1	265	77	111	21.0959
gggggg^^^^^^^^^^^^^^^^^^ggggggg22b	chr7:156589037-156589303(-)$1	266	15	49	22.0905
eeeeeeeeeewwwwwwwwwwwwwweeeee]eeee	chr8:117878830-117879073(-)$1	243	194	228	24.4621
""eeeeecccuuuuuuuuuuuuccc]eeeee]dd	chr1:151403127-151403436(-)$1	309	58	92	22.6057
[eeeee^^^^^^^^^^^^^^^^^^^^^eeeee]e	chr14:53124735-53124978(-)$1	243	33	67	21.8341
ggggggg^^^^^^^^^^^^^^^^^^ggggggg]d	chr6:31696873-31697126(-)$1	253	19	53	22.6537
##ccc[a[dddduuuuuuuuuuuudddd22a]cc	chr17:74731355-74731582(-)$1	227	138	172	22.8753
:iiiiiiiiixxxxxxxxxxxxxxxiiiiiiiii	chr11:64540780-64541049(-)$1	269	218	252	22.8062
==========^^^^^^^^^^^^^^^^^^^^^^^=	chr5:138650284-138650501(+)$1	217	42	76	23.1821
eee[ccccccwwwwwwwwwwwwwwccc]ccc]ee	chr1:25568779-25569024(-)$1	245	108	142	25.0338
g####eeeeewwwwwwwwwwwwwweeeeeggggg	chr14:31084451-31084704(+)$1	253	42	76	25.3830
!bbdddddddduuuuuuuuuuuudddd]dddd]b	chr3:88107857-88108120(-)$1	263	113	147	21.7065
dddd[ffffffvvvvvvvvvvvvvffffff22dd	chr12:98991525-98991778(+)$1	253	138	172	22.4378
ffff[eeeee^^^^^^^^^^^^^^^^^^^^^^^e	chr3:123667834-123668096(-)$1	262	115	149	21.9647
!!dddd^^^^^^^^^^^^^^^^^^^^^dddd22h	chr14:31592676-31592982(-)$1	306	50	84	21.3513
===========vvvvvvvvvvvvv==========	chr1:24975268-24975504(+)$1	236	116	150	26.1123
eeeee[ddddyyyyyyyyyyyyyyyyddddeeee	chr18:23663990-23664248(-)$1	258	204	238	23.7196
eeeeeeeeeexxxxxxxxxxxxxxxeeeee]eee	chr18:43845192-43845461(+)$1	269	137	171	22.3837
fffffeeeeexxxxxxxxxxxxxxxeeeee]fff	chr5:65465769-65466057(+)$1	288	125	159	22.0341
$$$$ccc[bbwwwwwwwwwwwwwwbb]ccchhhh	chr11:67010357-67010633(+)$1	276	141	175	22.4470
eeea[eeeeewwwwwwwwwwwwwweeeee]a]ee	chr5:38967380-38967635(-)$1	255	153	187	25.3366
ffffff[ddddvvvvvvvvvvvvvdddd]fffff	chr11:62569574-62569846(-)$1	272	97	131	22.6978
gg"""ggggggguuuuuuuuuuuuggggggg333	chr3:33728483-33728730(-)$1	247	40	74	24.8106
[ddddcccyyyyyyyyyyyyyyyyccc]dddd]b	chr7:148514620-148514831(-)$1	211	79	113	23.2457
"gggggggyyyyyyyyyyyyyyyyggggggg333	chr11:243914-244198(+)$1	284	85	119	25.6204
hhha[a[ddddvvvvvvvvvvvvvdddd]a]a]h	chr2:97285103-97285406(-)$1	303	146	180	23.5188
============uuuuuuuuuuuu==========	chr12:121248534-121248799(-)$1	265	25	59	25.4185
iiiiiii[bbvvvvvvvvvvvvvbb22iiiiiii	chr2:15618262-15618550(-)$1	288	218	252	23.6881
======!!bbyyyyyyyyyyyyyyyybb]=====	chr12:50399037-50399290(-)$1	253	62	96	25.2425
fffff[dddd^^^^^^^^^^^^^^^^^^^^^^^^	chr2:70516363-70516629(-)$1	266	31	65	21.3599
""bb[cccyyyyyyyyyyyyyyyyccc]bb333d	chr7:131163274-131163536(+)$1	262	77	111	24.2151
gggggggddddvvvvvvvvvvvvvdddd22gggg	chr9:95025185-95025435(-)$1	250	49	83	23.8880
eee!!eeeeexxxxxxxxxxxxxxxeeeee4444	chr22:19438109-19438379(-)$1	270	197	231	23.6230
beeeeeddddyyyyyyyyyyyyyyyydddd333e	chr3:40351244-40351473(+)$1	229	72	106	24.5051
[ccc####bbuuuuuuuuuuuubb4444ccc22i	chr14:55528285-55528549(+)$1	264	58	92	23.2115
hhhhgggggggvvvvvvvvvvvvvggggggg22h	chr3:195791169-195791407(-)$1	238	121	155	23.9294
ggggg[bb[cccuuuuuuuuuuuucccbb]gggg	chr3:44826255-44826504(+)$1	249	29	63	23.0923
"iiiiiiiiiwwwwwwwwwwwwwwiiiiiiiii]	chr21:38480588-38480847(+)$1	259	74	108	25.9618
cccgggggggwwwwwwwwwwwwwwggggggg:::	chr6:31508323-31508556(-)$1	233	125	159	22.6119
dddd[eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chrX:129283411-129283646(-)$1	235	111	145	21.7062
dddd[ddddyyyyyyyyyyyyyyyydddd]dddd	chr2:216213690-216213964(+)$1	274	99	133	23.1759
iiigggggggwwwwwwwwwwwwwwgggggggeee	chr7:26230732-26230946(-)$1	214	40	74	25.4843
fff!!a[ddddvvvvvvvvvvvvvdddda333ff	chr1:155885510-155885749(-)$1	239	17	51	24.2626
===!!ggggggguuuuuuuuuuuuggggggg]==	chr3:5213728-5214005(+)$1	277	195	229	24.7704
=========xxxxxxxxxxxxxxx==========	chr7:86792194-86792440(+)$1	246	182	216	24.4916
dddd[eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr10:70230225-70230482(-)$1	257	50	84	21.7062
fffgggggggwwwwwwwwwwwwwwggggggg22f	chr17:42155622-42155898(-)$1	276	191	225	25.5328
f[gggggggbbtttttttttttbb]ggggggg]f	chr6:36569413-36569663(+)$1	250	80	114	21.0965
[a[bb[dddd^^^^^^^^^^^^^^^^^^dddd]b	chr2:71635131-71635403(+)$1	272	165	199	21.3069
eee[gggggggvvvvvvvvvvvvvgggggggeee	chr1:70696660-70696961(+)$1	301	59	93	24.3408
"bb"""ddddvvvvvvvvvvvvvdddd333bb33	chr2:178084019-178084289(+)$1	270	191	225	23.2337
==========yyyyyyyyyyyyyyyy========	chr9:19336164-19336423(+)$1	259	8	42	26.5659
==========^^^^^^^^^^^^^^^^^^^^^===	chr11:73554179-73554453(+)$1	274	76	110	23.4584
ccc[ccc[bbuuuuuuuuuuuubb]cccccc333	chr1:97278470-97278760(+)$1	290	123	157	23.2101
eee!!ffffffvvvvvvvvvvvvvffffff]eee	chr7:148543575-148543817(-)$1	242	133	167	23.1473

#otherMatches

#Seq PSSM
UGUGUGUUCGUCUCCAUUUAAAAUGUGAACAGUA	chr12:67704695-67704962(+)$1	267	27	61	21.2694
CCAGUUCUGUCCACACCCCUUCCCUUUCCUGUCC	chr19:48245325-48245579(+)$1	254	171	205	21.6174
UGCCAUUUUAAACGUUAUAUUCUAAAACCGUACU	chr7:32919405-32919642(-)$1	237	17	51	22.4758
CUAAAGGCUGUGCCCUCGCUCCACAACAGCCACA	chr12:57909766-57909976(+)$1	210	17	51	23.8705
UUUUUGCUUUUCAGGAACCGCGGGGAAAGGCGAA	chr3:140692446-140692706(+)$1	260	97	131	22.1842
UUCUUCCUUUUCUUUUUUUCUCCCAGGAGGAAGA	chr6:150048181-150048446(-)$1	265	86	120	26.1123
uccuuuuuuucuuuuuuuuucuuuuuuuguguuu	chr1:155884177-155884438(-)$1	261	60	94	21.0894
GAAAGCUCAGUUACCAUUAAUUUCAUUGAACAUU	chr17:65353533-65353804(-)$1	271	187	221	24.2724
GCCAAAUCCAUAUCCCCCCAAUAUUGGGUGCCCU	chr12:53837060-53837306(+)$1	246	124	158	25.5986
ACGGAACAAACACUACUUUUCUUCAACCUUUGCU	chr7:44839455-44839720(+)$1	265	77	111	21.0959
ACUUUUUGUUUAUUUUUACUAUUUAAAAGUAUAG	chr7:156589037-156589303(-)$1	266	15	49	22.0905
CCAUGUGUUCGAGUGUAAUUUAGAGAGCAGCGUG	chr8:117878830-117879073(-)$1	243	194	228	24.4621
aaaauGUGGGUUUAACAUUGUUUCUAACAUUCCU	chr1:151403127-151403436(-)$1	309	58	92	22.6057
UAAUGCUUUAAAACUUUUGAAAAACUUGUAUUUU	chr14:53124735-53124978(-)$1	243	33	67	21.8341
CGCCUAGAGAUGGCAGGAGGAAGACCUGGGCGCU	chr6:31696873-31697126(-)$1	253	19	53	22.6537
GCCAGGAAUACGUAAAUUCAAACUUGUACAUGCU	chr17:74731355-74731582(-)$1	227	138	172	22.8753
ACAUAUUGUGUCAGUUCAAUAAAAUCAUAGUAUG	chr11:64540780-64541049(-)$1	269	218	252	22.8062
UUAUUUUUGUUAAUUCUACUAAUUUACUUUGCUG	chr5:138650284-138650501(+)$1	217	42	76	23.1821
UUUCUCUUGCAGAUAUGAGAGAUAGCACAGAUGG	chr1:25568779-25569024(-)$1	245	108	142	25.0338
CCCUAAUAUAAUACCAAACACACAUGUAUGAAUG	chr14:31084451-31084704(+)$1	253	42	76	25.3830
CCGGGCCUCGUCCACUUUCCCUAACGGCGGCCUC	chr3:88107857-88108120(-)$1	263	113	147	21.7065
AACGGAUUCUCAGUUACACUUAAAGAGGAUGGUG	chr12:98991525-98991778(+)$1	253	138	172	22.4378
AGCAUCUUCAGAUAAUAAGAAACAGAUACCUAAU	chr3:123667834-123668096(-)$1	262	115	149	21.9647
UUUGUUUUCUAUCCUUUGUGCAAUUCUGAUAUUA	chr14:31592676-31592982(-)$1	306	50	84	21.3513
UGGAUUUUUGAAUGGAAAAAAUGCUCGAGAAUUU	chr1:24975268-24975504(+)$1	236	116	150	26.1123
gcucauccugguuuuuuuuuccugugcagguggg	chr18:23663990-23664248(-)$1	258	204	238	23.7196
GUGACAUAUUUUCUUCAUAGUCCCUAAUAUAGUC	chr18:43845192-43845461(+)$1	269	137	171	22.3837
AGAUCACGUUCAAGACAGAAAGACAGACGUAGAU	chr5:65465769-65466057(+)$1	288	125	159	22.0341
CCAACAGCGAUCCCAAGUUAGCCCUCACUGGAGU	chr11:67010357-67010633(+)$1	276	141	175	22.4470
GCAGCUGAGGCAAAAACUAUUCUUCCUCAUCGUG	chr5:38967380-38967635(-)$1	255	153	187	25.3366
CUUUCUCUCAUUUCUAGAUUCCUUAUGGCAGAAA	chr11:62569574-62569846(-)$1	272	97	131	22.6978
GAUAUUUUGUUUACUGUUUAUUAAAAACAAAUUU	chr3:33728483-33728730(-)$1	247	40	74	24.8106
UGAUGCACUUUAUUCUCAUUCUUUGUGCCAUUUU	chr7:148514620-148514831(-)$1	211	79	113	23.2457
AAAGACAUCCUAUAAUUUCUCUCCAUGUUUUGGU	chr11:243914-244198(+)$1	284	85	119	25.6204
CGCCGUGUUGCUGUGGACAAGUGUGCAAGGAGAG	chr2:97285103-97285406(-)$1	303	146	180	23.5188
UGGGGUUUAUAGAAcuccauuagacuguaagcuc	chr12:121248534-121248799(-)$1	265	25	59	25.4185
UGAUAAUUGAAACCUUAAUAUACUCCUAUUAUUA	chr2:15618262-15618550(-)$1	288	218	252	23.6881
UGAAGCUUUCUCCCCUGGCUAGUUAUGAUGUUUU	chr12:50399037-50399290(-)$1	253	62	96	25.2425
AAUUUUAGCAAAUUAUCUUAACUAUACCUAUUUA	chr2:70516363-70516629(-)$1	266	31	65	21.3599
uucuuuuuuuuuuuuuuuuuuuuuAAACAGUUUC	chr7:131163274-131163536(+)$1	262	77	111	24.2151
CUUGGACUUCAUUUCUAUUUUUAUUGAACUGUUU	chr9:95025185-95025435(-)$1	250	49	83	23.8880
UUGGCUGAUUGGAAAAUAAUAAAAGAAUCAUUUG	chr22:19438109-19438379(-)$1	270	197	231	23.6230
GGGCGAAGCGUUUUCUUAUUUAUUUCCGUUUUCU	chr3:40351244-40351473(+)$1	229	72	106	24.5051
UGAACACUGAUUUUGAAAUUUUUCUUUCUUCCUU	chr14:55528285-55528549(+)$1	264	58	92	23.2115
AGUUGGGGCCCAGAGAGAUGCAUGGGGCCCUGGA	chr3:195791169-195791407(-)$1	238	121	155	23.9294
AAGACUCUUGGAAUAGAAUAAAAAUCCAGUGUUU	chr3:44826255-44826504(+)$1	249	29	63	23.0923
AAUUUUUAAAUACUUGUUUUUCCUUUUAGAAAUG	chr21:38480588-38480847(+)$1	259	74	108	25.9618
AGAAAUAGUAUCUUUGUUUUCCUUUGCUGUUCCU	chr6:31508323-31508556(-)$1	233	125	159	22.6119
GACUAUGAAAGAGGAUGAAAAAAGAUACAAUGAA	chrX:129283411-129283646(-)$1	235	111	145	21.7062
CUUCUUCCUUUCUCUCUCCCCGCAUAGGAUGAAG	chr2:216213690-216213964(+)$1	274	99	133	23.1759
CAAGAGAAUAAUUUUUAUAAACCCUGUUUUCCAA	chr7:26230732-26230946(-)$1	214	40	74	25.4843
UUCCAGUGACUGGAAUAAAAACAGAGUCCGAUGA	chr1:155885510-155885749(-)$1	239	17	51	24.2626
UUGUUUGUUUGCUUUUAAAUCAAUGUAGGCAUCA	chr3:5213728-5214005(+)$1	277	195	229	24.7704
UAAUGCUUUAAGAUAAAACAUAAAGAGGUGUUAA	chr7:86792194-86792440(+)$1	246	182	216	24.4916
GUGGUAGAAAUUUCUUGUUUAAUGUUGUCCAAUU	chr10:70230225-70230482(-)$1	257	50	84	21.7062
GAUUUUGUUUAUUUUUUCUAUUAAAAACAAAAAG	chr17:42155622-42155898(-)$1	276	191	225	25.5328
UAGAGAUAGGAGAAGAGAGAGAUCGCUGUCUCGG	chr6:36569413-36569663(+)$1	250	80	114	21.0965
AGCUUUCUGAAACAAAAUCCACAAAAUAUUGGUG	chr2:71635131-71635403(+)$1	272	165	199	21.3069
AAGGAACCAUUACCUUUAUUUAACAGUGGUUUUU	chr1:70696660-70696961(+)$1	301	59	93	24.3408
AUGCAUUAGAGGAACUGUAAAAAUCUGCCACAGA	chr2:178084019-178084289(+)$1	270	191	225	23.2337
auauauauauaaacauacacacacacauauaugu	chr9:19336164-19336423(+)$1	259	8	42	26.5659
UUUGUUUUAACuuuuuuuuuuuuuuuuucccuug	chr11:73554179-73554453(+)$1	274	76	110	23.4584
AGCAGAAGAGGAUCUACGAACACUGUUCGCUAAC	chr1:97278470-97278760(+)$1	290	123	157	23.2101
UUUAGUUCCAAUCGUCAGAAAAUUUUGGAAAGAA	chr7:148543575-148543817(-)$1	242	133	167	23.1473

#DB
(...((((((.(............)))))))...	chr12:67704695-67704962(+)$1	1	27	61	21.2694
.(((..(.......................)..)	chr19:48245325-48245579(+)$1	1	171	205	21.6174
(((..(((((............)))))..))...	chr7:32919405-32919642(-)$1	1	17	51	22.4758
((...((((((..............))))))..)	chr12:57909766-57909976(+)$1	1	17	51	23.8705
)).(((((((((............))))))))))	chr3:140692446-140692706(+)$1	1	97	131	22.1842
(((((((((((.............))))))))))	chr6:150048181-150048446(-)$1	1	86	120	26.1123
............................)))..)	chr1:155884177-155884438(-)$1	1	60	94	21.0894
(((.(.(((((.............))))).).))	chr17:65353533-65353804(-)$1	1	187	221	24.2724
((...(((((..............))))))))))	chr12:53837060-53837306(+)$1	1	124	158	25.5986
))((((((((..................)))).)	chr7:44839455-44839720(+)$1	1	77	111	21.0959
((((((..................)))))))..)	chr7:156589037-156589303(-)$1	1	15	49	22.0905
((((((((((..............))))).))))	chr8:117878830-117879073(-)$1	1	194	228	24.4621
..((((((((............))).))))).))	chr1:151403127-151403436(-)$1	1	58	92	22.6057
.(((((.....................))))).)	chr14:53124735-53124978(-)$1	1	33	67	21.8341
(((((((..................))))))).)	chr6:31696873-31697126(-)$1	1	19	53	22.6537
..(((.(.((((............))))..).))	chr17:74731355-74731582(-)$1	1	138	172	22.8753
.(((((((((...............)))))))))	chr11:64540780-64541049(-)$1	1	218	252	22.8062
((((((((((.......................)	chr5:138650284-138650501(+)$1	1	42	76	23.1821
(((.((((((..............))).))).))	chr1:25568779-25569024(-)$1	1	108	142	25.0338
(....(((((..............))))))))))	chr14:31084451-31084704(+)$1	1	42	76	25.3830
.((((((((((............)))).)))).)	chr3:88107857-88108120(-)$1	1	113	147	21.7065
((((.((((((.............))))))..))	chr12:98991525-98991778(+)$1	1	138	172	22.4378
((((.(((((.......................)	chr3:123667834-123668096(-)$1	1	115	149	21.9647
..((((.....................))))..)	chr14:31592676-31592982(-)$1	1	50	84	21.3513
(((((((((((.............))))))))))	chr1:24975268-24975504(+)$1	1	116	150	26.1123
(((((.((((................))))))))	chr18:23663990-23664248(-)$1	1	204	238	23.7196
((((((((((...............))))).)))	chr18:43845192-43845461(+)$1	1	137	171	22.3837
((((((((((...............))))).)))	chr5:65465769-65466057(+)$1	1	125	159	22.0341
....(((.((..............)).)))))))	chr11:67010357-67010633(+)$1	1	141	175	22.4470
((((.(((((..............))))).).))	chr5:38967380-38967635(-)$1	1	153	187	25.3366
((((((.((((.............)))).)))))	chr11:62569574-62569846(-)$1	1	97	131	22.6978
((...(((((((............)))))))...	chr3:33728483-33728730(-)$1	1	40	74	24.8106
.(((((((................))).)))).)	chr7:148514620-148514831(-)$1	1	79	113	23.2457
.(((((((................)))))))...	chr11:243914-244198(+)$1	1	85	119	25.6204
((((.(.((((.............)))).).).)	chr2:97285103-97285406(-)$1	1	146	180	23.5188
((((((((((((............))))))))))	chr12:121248534-121248799(-)$1	1	25	59	25.4185
(((((((.((.............))..)))))))	chr2:15618262-15618550(-)$1	1	218	252	23.6881
((((((..((................)).)))))	chr12:50399037-50399290(-)$1	1	62	96	25.2425
(((((.((((........................	chr2:70516363-70516629(-)$1	1	31	65	21.3599
..((.(((................))).))...)	chr7:131163274-131163536(+)$1	1	77	111	24.2151
(((((((((((.............))))..))))	chr9:95025185-95025435(-)$1	1	49	83	23.8880
(((..(((((...............)))))....	chr22:19438109-19438379(-)$1	1	197	231	23.6230
((((((((((................))))...)	chr3:40351244-40351473(+)$1	1	72	106	24.5051
.(((....((............))....)))..)	chr14:55528285-55528549(+)$1	1	58	92	23.2115
(((((((((((.............)))))))..)	chr3:195791169-195791407(-)$1	1	121	155	23.9294
(((((.((.(((............))))).))))	chr3:44826255-44826504(+)$1	1	29	63	23.0923
.(((((((((..............))))))))).	chr21:38480588-38480847(+)$1	1	74	108	25.9618
)))(((((((..............)))))))...	chr6:31508323-31508556(-)$1	1	125	159	22.6119
((((.(((((........................	chrX:129283411-129283646(-)$1	1	111	145	21.7062
((((.((((................)))).))))	chr2:216213690-216213964(+)$1	1	99	133	23.1759
)))(((((((..............)))))))(((	chr7:26230732-26230946(-)$1	1	40	74	25.4843
(((..(.((((.............)))))...))	chr1:155885510-155885749(-)$1	1	17	51	24.2626
(((..(((((((............))))))).))	chr3:5213728-5214005(+)$1	1	195	229	24.7704
(((((((((...............))))))))))	chr7:86792194-86792440(+)$1	1	182	216	24.4916
((((.(((((........................	chr10:70230225-70230482(-)$1	1	50	84	21.7062
((((((((((..............)))))))..)	chr17:42155622-42155898(-)$1	1	191	225	25.5328
(.(((((((((...........)).))))))).)	chr6:36569413-36569663(+)$1	1	80	114	21.0965
.(.((.((((..................)))).)	chr2:71635131-71635403(+)$1	1	165	199	21.3069
(((.(((((((.............))))))))))	chr1:70696660-70696961(+)$1	1	59	93	24.3408
.((...((((.............))))...))..	chr2:178084019-178084289(+)$1	1	191	225	23.2337
((((((((((................))))))))	chr9:19336164-19336423(+)$1	1	8	42	26.5659
((((((((((.....................)))	chr11:73554179-73554453(+)$1	1	76	110	23.4584
(((.(((.((............)).))))))...	chr1:97278470-97278760(+)$1	1	123	157	23.2101
(((..((((((.............)))))).)))	chr7:148543575-148543817(-)$1	1	133	167	23.1473

#PSSM
= : 0.14	f : 0.12	e : 0.12	d : 0.10	g : 0.10	" : 0.07	c : 0.06	[ : 0.06	: : 0.03	! : 0.03	h : 0.03	i : 0.03	^ : 0.01	# : 0.01	$ : 0.01	b : 0.01	
e : 0.15	= : 0.14	f : 0.10	g : 0.10	c : 0.09	d : 0.09	i : 0.06	" : 0.04	b : 0.04	# : 0.03	h : 0.03	^ : 0.01	! : 0.01	$ : 0.01	[ : 0.01	a : 0.01	
e : 0.17	= : 0.14	f : 0.10	d : 0.10	g : 0.09	c : 0.07	" : 0.06	b : 0.06	i : 0.06	h : 0.03	: : 0.01	^ : 0.01	# : 0.01	$ : 0.01	[ : 0.01	
g : 0.14	= : 0.12	d : 0.12	e : 0.09	" : 0.07	! : 0.07	i : 0.06	[ : 0.06	f : 0.06	c : 0.04	a : 0.03	b : 0.03	^ : 0.01	# : 0.01	$ : 0.01	h : 0.01	
g : 0.17	= : 0.12	[ : 0.12	! : 0.09	e : 0.09	f : 0.06	" : 0.06	i : 0.06	d : 0.06	c : 0.06	# : 0.03	^ : 0.01	a : 0.01	b : 0.01	
e : 0.21	g : 0.18	= : 0.12	[ : 0.09	f : 0.07	c : 0.07	i : 0.06	d : 0.06	a : 0.03	! : 0.01	^ : 0.01	# : 0.01	" : 0.01	
e : 0.20	g : 0.17	d : 0.12	= : 0.10	c : 0.07	f : 0.06	i : 0.06	^ : 0.06	[ : 0.04	a : 0.03	! : 0.01	# : 0.01	b : 0.01	
e : 0.18	d : 0.18	g : 0.14	= : 0.10	^ : 0.09	f : 0.06	c : 0.06	[ : 0.06	i : 0.04	! : 0.01	# : 0.01	b : 0.01	
d : 0.20	e : 0.18	g : 0.12	= : 0.10	^ : 0.09	b : 0.07	f : 0.06	i : 0.04	y : 0.04	c : 0.03	[ : 0.01	
e : 0.18	d : 0.18	g : 0.10	^ : 0.09	= : 0.09	b : 0.09	f : 0.06	y : 0.06	i : 0.04	c : 0.04	x : 0.01	
^ : 0.21	w : 0.15	y : 0.12	d : 0.09	x : 0.07	u : 0.06	g : 0.06	f : 0.04	= : 0.04	v : 0.03	[ : 0.01	i : 0.01	e : 0.01	c : 0.01	b : 0.01	
^ : 0.21	v : 0.20	w : 0.17	y : 0.12	u : 0.07	x : 0.07	g : 0.03	a : 0.01	i : 0.01	d : 0.01	= : 0.01	c : 0.01	t : 0.01	
^ : 0.21	v : 0.20	u : 0.18	w : 0.17	y : 0.12	x : 0.07	t : 0.01	
^ : 0.21	v : 0.20	u : 0.18	w : 0.17	y : 0.12	x : 0.07	t : 0.01	
^ : 0.21	v : 0.20	u : 0.18	w : 0.17	y : 0.12	x : 0.07	t : 0.01	
^ : 0.21	v : 0.20	u : 0.18	w : 0.17	y : 0.12	x : 0.07	t : 0.01	
^ : 0.21	v : 0.20	u : 0.18	w : 0.17	y : 0.12	x : 0.07	t : 0.01	
^ : 0.21	v : 0.20	u : 0.18	w : 0.17	y : 0.12	x : 0.07	t : 0.01	
^ : 0.21	v : 0.20	u : 0.18	w : 0.17	y : 0.12	x : 0.07	t : 0.01	
^ : 0.21	v : 0.20	u : 0.18	w : 0.17	y : 0.12	x : 0.07	t : 0.01	
^ : 0.21	v : 0.20	u : 0.18	w : 0.17	y : 0.12	x : 0.07	t : 0.01	
^ : 0.21	v : 0.20	u : 0.18	w : 0.17	y : 0.12	x : 0.07	t : 0.01	
^ : 0.21	v : 0.20	w : 0.17	u : 0.12	y : 0.12	x : 0.07	b : 0.04	e : 0.01	c : 0.01	
^ : 0.21	w : 0.17	v : 0.17	y : 0.12	u : 0.10	x : 0.07	b : 0.06	d : 0.03	e : 0.01	c : 0.01	
^ : 0.20	g : 0.14	d : 0.10	e : 0.09	c : 0.07	y : 0.07	= : 0.06	x : 0.06	i : 0.03	f : 0.03	b : 0.03	] : 0.03	a : 0.01	w : 0.01	4 : 0.01	
^ : 0.18	g : 0.17	e : 0.14	d : 0.12	c : 0.07	f : 0.06	= : 0.06	y : 0.06	i : 0.04	] : 0.01	b : 0.01	2 : 0.01	4 : 0.01	
^ : 0.18	g : 0.17	e : 0.15	d : 0.15	= : 0.07	c : 0.07	f : 0.06	i : 0.04	] : 0.01	2 : 0.01	b : 0.01	4 : 0.01	
g : 0.17	^ : 0.15	e : 0.15	d : 0.14	= : 0.07	f : 0.06	i : 0.06	] : 0.06	c : 0.03	b : 0.03	2 : 0.01	4 : 0.01	3 : 0.01	
g : 0.17	e : 0.15	d : 0.12	^ : 0.10	= : 0.07	c : 0.07	f : 0.06	i : 0.06	2 : 0.04	] : 0.04	b : 0.03	a : 0.01	3 : 0.01	
g : 0.20	^ : 0.10	d : 0.10	= : 0.09	f : 0.07	c : 0.07	] : 0.07	e : 0.07	i : 0.06	b : 0.03	2 : 0.03	3 : 0.03	a : 0.01	
g : 0.23	= : 0.09	d : 0.09	^ : 0.09	a : 0.06	i : 0.06	c : 0.06	e : 0.06	] : 0.06	f : 0.04	3 : 0.04	b : 0.03	2 : 0.01	h : 0.01	4 : 0.01	
2 : 0.14	3 : 0.10	= : 0.10	e : 0.10	] : 0.09	g : 0.09	d : 0.07	^ : 0.07	i : 0.06	f : 0.03	5 : 0.01	h : 0.01	a : 0.01	4 : 0.01	: : 0.01	b : 0.01	
2 : 0.12	= : 0.12	] : 0.12	e : 0.12	3 : 0.10	^ : 0.07	i : 0.06	f : 0.06	g : 0.06	d : 0.04	5 : 0.01	c : 0.01	h : 0.01	4 : 0.01	: : 0.01	
e : 0.17	= : 0.14	f : 0.10	d : 0.09	3 : 0.07	g : 0.06	b : 0.06	h : 0.06	c : 0.04	i : 0.04	^ : 0.04	5 : 0.01	F : 0.01	4 : 0.01	] : 0.01	: : 0.01	

#score	1500.1397824135197
#seq	64
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_CDS_m1_run2.txt

#BEAR
iiiiiigggggggcccnnnnnccc]ggggggg444	chr16:88873789-88874009(+)$1	220	61	96	15.7528
[eeeee[ddddccc[annnnna]ccc22dddd444	chr20:60847212-60847435(+)$1	223	77	112	11.3463
e####bb[ffffff[aooooooa]ffffff]bb33	chr3:56600844-56601107(+)$1	263	60	95	11.8601
::ccc[a[bb"""cccnnnnnccc333bb]accc:	chr1:62905607-62905899(+)$1	292	143	178	11.4074
d"""ccc[hhhhhhhhoooooohhhhhhhhccc]d	chr1:11172722-11173009(-)$1	287	75	110	11.8908
ee[dddd!!gggggggnnnnnggggggg22dddde	chr21:47976879-47977096(+)$1	217	166	201	11.6311
c[a!!ccc[ccc[cccmmmmccc22ccc333ccc2	chr5:138941292-138941549(+)$1	257	76	111	12.3057
%gggggggccc[aooooooa]ccc22ggggggg66	chr12:31451034-31451292(-)$1	258	192	227	11.7041
=========[eeeee[aooooooa]eeeee=====	chr5:141000908-141001155(-)$1	247	151	186	13.9260
h!!cccccca[eeeeeooooooeeeee]a]ccc]c	chr2:219527106-219527360(+)$1	254	142	177	12.6957
=dddd"""bb"""cccooooooccc333bb66666	chr19:47230581-47230810(-)$1	229	59	94	12.1774
eeeegggggggccc[annnnna]ccc22ggggggg	chr6:43484968-43485217(+)$1	249	198	233	12.9144
iiiiiii!!ccccccooooooccc]ccc333iiii	chr1:39789881-39790160(+)$1	279	177	212	16.4135
iiiiiiiieeeee[bbnnnnnbb]eeeee22iiii	chr4:122739773-122740057(-)$1	284	225	260	11.8358
ccc[dddd####cccooooooccc4444dddd333	chr19:1826731-1826977(-)$1	246	13	48	14.0482
ggggggbb!!a[cccooooooccc]a4444bb]gg	chr16:88722578-88722846(-)$1	268	92	127	14.5933
bbbb[iiiiiiiiiooooooiiiiiiiii]bb444	chr3:47859506-47859729(+)$1	223	93	128	13.6807
b!!cccccc[bb[cccnnnnnccc22bb]ccc]cc	chr12:131357000-131357255(+)$1	255	136	171	12.9819
ggggg!!bb!!ccccccmmmmccc]ccc4444bb4	chr1:114508789-114509055(+)$1	266	74	109	12.2054
''============oooooo============666	chr17:42273025-42273271(-)$1	246	101	136	14.1553
ddd[dddd[a!!ccc[aooooooa]ccc22adddd	chr11:118390406-118390653(+)$1	247	35	70	12.3483
cc[iiiiiiiii[ccclllccc]iiiiiiiiiccc	chr16:8952923-8953128(-)$1	205	133	168	13.9774
hhh"""ggggggg[bboooooobb]ggggggghhh	chr16:1416943-1417193(-)$1	250	109	144	13.4310
ccc:ccciiiiiiiiiooooooiiiiiiiii]ccc	chr19:10916542-10916748(+)$1	206	115	150	14.6449
eeee[ccca"""ddddoooooodddd333a]ccc]	chr22:42991493-42991755(-)$1	262	138	173	13.1278
d[ccccccffffff[annnnna]ffffff4444cc	chr21:38878425-38878671(+)$1	246	68	103	11.8968
f[a"""dddd[cccbboooooobb]ccc]dddd]a	chr5:140044587-140044872(+)$1	285	236	271	12.9928
eeeee[eeeee[cccooooooccc]eeeeeeeeee	chr11:46404208-46404435(+)$1	227	106	141	12.1480
bb!!ggggggg[ddddoooooodddd>>>>>>>>>	chr18:693751-694027(-)$1	276	18	53	11.7971
ffff"""iiiiiiiiinnnnniiiiiiiiifffff	chr6:88227844-88228110(-)$1	266	104	139	13.3432
C::==========cccnnnnnccc22=========	chr17:3845751-3846003(-)$1	252	101	136	13.5695
ffffggggggg[cccooooooccc]ggggggg:::	chr18:9936089-9936396(+)$1	307	202	237	12.5978
[cccccc[==========lll==========22cc	chr16:88066749-88067055(+)$1	306	177	212	14.0423
ggbb[ccc!!ccc[cccmmmmccc]cccccc]bb]	chr8:41575606-41575847(-)$1	241	174	209	11.2908
ccc####iiiiiiiiinnnnniiiiiiiii4444c	chr11:72466586-72466854(-)$1	268	95	130	15.1838
==========="""bboooooobb]==========	chr15:75653799-75654046(-)$1	247	210	245	16.8871
!dddd[a[ccc[cccooooooccc]ccc]a]dddd	chr14:74763034-74763275(-)$1	241	35	70	14.0842
:ccc==========cccmmmmccc]==========	chr20:2634933-2635240(+)$1	307	58	93	13.7747
]ccciiiiiiiii[bbnnnnnbb22iiiiiiiii:	chr6:135506902-135507144(+)$1	242	199	234	13.2479
==========!!cccooooooccc22=========	chr9:134007845-134008092(+)$1	247	4	39	17.4653
&&==========[cccnnnnnccc==========>	chr9:114132901-114133179(-)$1	278	68	103	15.5814
ccc[==========bboooooobb]==========	chr16:684876-685081(-)$1	205	165	200	16.8756
cccggggggg!!a[bboooooobb]a666666ggg	chr1:27742357-27742588(-)$1	231	43	78	12.0883
"""bb[eeeee!!bboooooobb22eeeee]bb44	chr16:71766937-71767191(-)$1	254	76	111	11.6557
!ggggggg[bb!!cccnnnnnccc22bbggggggg	chr18:2934192-2934452(-)$1	260	57	92	13.6084
::ccc[==========nnnnn==========]ccc	chr12:46764775-46765072(-)$1	297	242	277	14.0974
"eeeee[a!!ccc[bboooooobb]ccc22a]eee	chr20:47881075-47881353(-)$1	278	119	154	13.0435
fff[ccc[bbccccccooooooccc22ccc66666	chr9:35065237-35065496(-)$1	259	157	192	12.1761
ggggccc!!a[eeeeeooooooeeeeea22ccc]g	chr7:100228304-100228615(-)$1	311	156	191	12.8953
!a[iiiiiiiii[ccclllccc]iiiiiiiii]a2	chr6:31506782-31507016(-)$1	234	4	39	14.0164
"""ccc[iiiiiiiiillliiiiiiiii333ccc4	chr2:89035152-89035400(+)$1	248	51	86	14.2578
gggcccccc[ffffffnnnnnffffff]ccc]ccc	chr9:139911213-139911473(-)$1	260	198	233	11.4779
==========!!ddddnnnnndddd333=======	chr5:90672324-90672559(-)$1	235	142	177	14.7822
cc!!ggggggg[cccooooooccc]ggggggg999	chr4:128608725-128608972(+)$1	247	119	154	14.4651
iiiiiii"""dddd[ccclllccc]dddd333iii	chr5:176732945-176733222(+)$1	277	235	270	12.1009
bbiiiiiiiiieeeeellleeeee]iiiiiiiii4	chr17:42400783-42401045(-)$1	262	80	115	12.1149

#otherMatches

#Seq PSSM
GCCAGGAUGGUGGGCAGCUGUUGUACUAUCAUGAG	chr16:88873789-88874009(+)$1	220	61	96	15.7528
AGCCCCAGCCCCUGGAGAGGAUGCAGGUGGGCCUU	chr20:60847212-60847435(+)$1	223	77	112	11.3463
ACUUAAUAUUUAUGGAGUCAGUUGUGUAGAAAUGU	chr3:56600844-56601107(+)$1	263	60	95	11.8601
AGCAGCAGUGAACUUGGUUGACAACUCCAGUCUGA	chr1:62905607-62905899(+)$1	292	143	178	11.4074
UUCCUACUCUGCUGGCCAGUCAGUCGGUAGGUGCA	chr1:11172722-11173009(-)$1	287	75	110	11.8908
GCCUUCUAAGGCACCUUUUCUGGGUGCUCAGGAAG	chr21:47976879-47977096(+)$1	217	166	201	11.6311
cuccCACCAUGGCUCUGAAGAGAAUCCACAAGGUA	chr5:138941292-138941549(+)$1	257	76	111	12.3057
AGAGGGCUGCUGUAUUUGCAGAGCUAAGUCCUCCA	chr12:31451034-31451292(-)$1	258	192	227	11.7041
UUUCUUUUCACCUCUUGGUUGGGCUGGAGGGAAAA	chr5:141000908-141001155(-)$1	247	151	186	13.9260
GAACUGGAGCACAGCAUCUGCCUGCUGAGCCUCAC	chr2:219527106-219527360(+)$1	254	142	177	12.6957
GGCAGAUCUCACCGUCACCAACGACAACGACCUCA	chr19:47230581-47230810(-)$1	229	59	94	12.1774
GUCUGAGCAGCCUGUGUCUGUCUCAGAAGCUGCUC	chr6:43484968-43485217(+)$1	249	198	233	12.9144
AUGUGAUAAUACAUUAGGUGGAAUAGUAGAAGUCA	chr1:39789881-39790160(+)$1	279	177	212	16.4135
AUAUaguugaccuuugaaaaacacagguuugaacu	chr4:122739773-122740057(-)$1	284	225	260	11.8358
UGACUCCGACCCCAUGGAGGAGUGCCUGCGGAUCU	chr19:1826731-1826977(-)$1	246	13	48	14.0482
CAGGCAGCUCUGAGGACCCUCCCUGAAUCCGCAUG	chr16:88722578-88722846(-)$1	268	92	127	14.5933
cucucgagguaagggaggagccuugccuccaGCAA	chr3:47859506-47859729(+)$1	223	93	128	13.6807
CGAUGGCUGCGCAGGGAGAGCCCCAGGUCCAGUUC	chr12:131357000-131357255(+)$1	255	136	171	12.9819
UGGGGAGUGGACAGCAGCUAGCUGACUGGAGGCAA	chr1:114508789-114509055(+)$1	266	74	109	12.2054
AAGGUGAGUAUGGGCCGCCCCUCAUGCUUGCUCUC	chr17:42273025-42273271(-)$1	246	101	136	14.1553
GCCAGAGGAGGCCAAUGAACCCCCCUUGAACCCUC	chr11:118390406-118390653(+)$1	247	35	70	12.3483
AGAUGGAUCUCUUGCCUGAGGCCAGAGAUUCACUG	chr16:8952923-8953128(-)$1	205	133	168	13.9774
UGCUCUGGGCAGGGUGAGGGGCCAGCCUGCCUGCA	chr16:1416943-1417193(-)$1	250	109	144	13.4310
UGCAGUCUCCCGCUCUACCCUGGGGGCGGGAGGAC	chr19:10916542-10916748(+)$1	206	115	150	14.6449
GUUCUCAGCCCAUUGGAAGGCACCAAGAUGACUGU	chr22:42991493-42991755(-)$1	262	138	173	13.1278
CAGGCCAUGGACUGCGAGACACACAGUCCCCAGGU	chr21:38878425-38878671(+)$1	246	68	103	11.8968
CGGCUCUUCUAUCACACCAAUCUGUUGAAAGAACU	chr5:140044587-140044872(+)$1	285	236	271	12.9928
GGGGGUGGGGCUGUcgcggggggcugccccccccc	chr11:46404208-46404435(+)$1	227	106	141	12.1480
GUGGCUGACAGCCAGCAUUAGAGCUGCCAACGCGU	chr18:693751-694027(-)$1	276	18	53	11.7971
UUUUAACUUUAAACUUUUGAUAAGUUUGGAAGAGA	chr6:88227844-88228110(-)$1	266	104	139	13.3432
AAGGUGGGGGCCUGCCUGGCUGGCCUGGGCCCCUG	chr17:3845751-3846003(-)$1	252	101	136	13.5695
UUCUAAAAACUAAAAGUUAAAUUUAGGUUUUUAAA	chr18:9936089-9936396(+)$1	307	202	237	12.5978
ACCGGUUCCGCUGUGUUUUGGGAGCACAGUGAUAG	chr16:88066749-88067055(+)$1	306	177	212	14.0423
UCAUGGAGCUGCUGCUGAAGACGGGAGCCUCGAUC	chr8:41575606-41575847(-)$1	241	174	209	11.2908
UCCUGGCUCCCAAGGUGAGUGGCCUUGGGAUUUUG	chr11:72466586-72466854(-)$1	268	95	130	15.1838
CUGCCUCUGCCAGGGUCACAUAGCAGGCAGGGGCA	chr15:75653799-75654046(-)$1	247	210	245	16.8871
AAGAGCAGAGGUGAUGUGAAAGUUUCUUGUUCUCU	chr14:74763034-74763275(-)$1	241	35	70	14.0842
UCAGCUGAGGGAUGUUAGAGUUGAUCGUCCUUCAG	chr20:2634933-2635240(+)$1	307	58	93	13.7747
CUGCUUCCCAAGUCUGGAAAGCGUCACUUGGGGAA	chr6:135506902-135507144(+)$1	242	199	234	13.2479
UCUGUUUCUUCAGUCUCUCCCGGCCAAGGAGAUGG	chr9:134007845-134008092(+)$1	247	4	39	17.4653
AUGGUUUAGACAGUGUAAAUGACAUGUUUGGGCUU	chr9:114132901-114133179(-)$1	278	68	103	15.5814
UGGACUUUGACCUGAUGCUCAGAUGCAGGUCAGAG	chr16:684876-685081(-)$1	205	165	200	16.8756
UGAUCUUUGGAAGGAGAAGAUGCUGCAGGACACCA	chr1:27742357-27742588(-)$1	231	43	78	12.0883
UUCUGGAGAUUUCAUUUCAGUAUAUAAUUUGCACU	chr16:71766937-71767191(-)$1	254	76	111	11.6557
UUAAAGGGUCUAGAACCUGAAGUUGCAGCUCUUUA	chr18:2934192-2934452(-)$1	260	57	92	13.6084
AUCCGAUUAUCUUGUUGUAAUGACAAGAUAGCUGG	chr12:46764775-46765072(-)$1	297	242	277	14.0974
AUAUCUGGGGUAGUUCAAGAGGGACCUAAACAAGA	chr20:47881075-47881353(-)$1	278	119	154	13.0435
AGUUCAAAGUGGUGGAAACAGAUCCUAGCCCUUAU	chr9:35065237-35065496(-)$1	259	157	192	12.1761
CUGCCCAUACACCCUGGCAAGAUAGGGGGCUGGUG	chr7:100228304-100228615(-)$1	311	156	191	12.8953
AUGUCCUGUGCCAGGCCAAGUCGGGCAUGGGAAAG	chr6:31506782-31507016(-)$1	234	4	39	14.0164
GAAGAUUGUGGCUGGCUAUGCUAGUCGCUUCAUCG	chr2:89035152-89035400(+)$1	248	51	86	14.2578
GGCUCCCUGGGUGGGCACGUGGCCCACGUGGUGGA	chr9:139911213-139911473(-)$1	260	198	233	11.4779
UUAUUCUUUGUUUUUGGCAUAUAAAUAUUAAAGAA	chr5:90672324-90672559(-)$1	235	142	177	14.7822
GAUUGAGAAUGUUCCUCGUUUGGAUCAUUUUUUUA	chr4:128608725-128608972(+)$1	247	119	154	14.4651
AGUUUCUGGGUAUGUGGAUAUUCCUCAUAGGGAGA	chr5:176732945-176733222(+)$1	277	235	270	12.1009
GUUUGAGGUUUGGUUUUCAGGACUGAAGCUUCAAG	chr17:42400783-42401045(-)$1	262	80	115	12.1149

#DB
((((((((((((((((.....))).)))))))...	chr16:88873789-88874009(+)$1	1	61	96	15.7528
.(((((.(((((((.(.....).)))..))))...	chr20:60847212-60847435(+)$1	1	77	112	11.3463
(....((.((((((.(......).)))))).))..	chr3:56600844-56601107(+)$1	1	60	95	11.8601
..(((.(.((...(((.....)))...)).)))).	chr1:62905607-62905899(+)$1	1	143	178	11.4074
(...(((.((((((((......))))))))))).)	chr1:11172722-11173009(-)$1	1	75	110	11.8908
((.((((..(((((((.....)))))))..)))))	chr21:47976879-47977096(+)$1	1	166	201	11.6311
(.(..(((.(((.(((....)))..)))...))).	chr5:138941292-138941549(+)$1	1	76	111	12.3057
.((((((((((.(......).)))..)))))))..	chr12:31451034-31451292(-)$1	1	192	227	11.7041
(((((((((.(((((.(......).))))))))))	chr5:141000908-141001155(-)$1	1	151	186	13.9260
(..(((((((.(((((......))))).).))).)	chr2:219527106-219527360(+)$1	1	142	177	12.6957
(((((...((...(((......)))...)).....	chr19:47230581-47230810(-)$1	1	59	94	12.1774
))))((((((((((.(.....).)))..)))))))	chr6:43484968-43485217(+)$1	1	198	233	12.9144
(((((((..((((((......))).)))...))))	chr1:39789881-39790160(+)$1	1	177	212	16.4135
(((((((((((((.((.....)).)))))..))))	chr4:122739773-122740057(-)$1	1	225	260	11.8358
(((.((((....(((......)))....))))...	chr19:1826731-1826977(-)$1	1	13	48	14.0482
((((((((..(.(((......))).)....)).))	chr16:88722578-88722846(-)$1	1	92	127	14.5933
((((.(((((((((......))))))))).))...	chr3:47859506-47859729(+)$1	1	93	128	13.6807
(..((((((.((.(((.....)))..)).))).))	chr12:131357000-131357255(+)$1	1	136	171	12.9819
(((((..((..((((((....))).)))....)).	chr1:114508789-114509055(+)$1	1	74	109	12.2054
..((((((((((((......))))))))))))...	chr17:42273025-42273271(-)$1	1	101	136	14.1553
(((.((((.(..(((.(......).)))..)))))	chr11:118390406-118390653(+)$1	1	35	70	12.3483
((.(((((((((.(((...))).))))))))))))	chr16:8952923-8953128(-)$1	1	133	168	13.9774
(((...(((((((.((......)).))))))))))	chr16:1416943-1417193(-)$1	1	109	144	13.4310
))).((((((((((((......))))))))).)))	chr19:10916542-10916748(+)$1	1	115	150	14.6449
((((.((((...((((......))))...).))).	chr22:42991493-42991755(-)$1	1	138	173	13.1278
(.((((((((((((.(.....).))))))....))	chr21:38878425-38878671(+)$1	1	68	103	11.8968
(.(...((((.(((((......)).))).)))).)	chr5:140044587-140044872(+)$1	1	236	271	12.9928
(((((.(((((.(((......))).))))))))))	chr11:46404208-46404435(+)$1	1	106	141	12.1480
((..(((((((.((((......)))).........	chr18:693751-694027(-)$1	1	18	53	11.7971
((((...(((((((((.....))))))))))))))	chr6:88227844-88228110(-)$1	1	104	139	13.3432
(..(((((((((((((.....)))..)))))))))	chr17:3845751-3846003(-)$1	1	101	136	13.5695
))))(((((((.(((......))).)))))))...	chr18:9936089-9936396(+)$1	1	202	237	12.5978
.((((((.((((((((((...))))))))))..))	chr16:88066749-88067055(+)$1	1	177	212	14.0423
((((.(((..(((.(((....))).)))))).)).	chr8:41575606-41575847(-)$1	1	174	209	11.2908
(((....(((((((((.....)))))))))....)	chr11:72466586-72466854(-)$1	1	95	130	15.1838
(((((((((((...((......)).))))))))))	chr15:75653799-75654046(-)$1	1	210	245	16.8871
.((((.(.(((.(((......))).))).).))))	chr14:74763034-74763275(-)$1	1	35	70	14.0842
.((((((((((((((((....))).))))))))))	chr20:2634933-2635240(+)$1	1	58	93	13.7747
.)))(((((((((.((.....))..))))))))).	chr6:135506902-135507144(+)$1	1	199	234	13.2479
((((((((((..(((......)))..)))))))))	chr9:134007845-134008092(+)$1	1	4	39	17.4653
..((((((((((.(((.....))))))))))))).	chr9:114132901-114133179(-)$1	1	68	103	15.5814
(((.((((((((((((......)).))))))))))	chr16:684876-685081(-)$1	1	165	200	16.8756
((((((((((..(.((......)).)......)))	chr1:27742357-27742588(-)$1	1	43	78	12.0883
...((.(((((..((......))..))))).))..	chr16:71766937-71767191(-)$1	1	76	111	11.6557
.(((((((.((..(((.....)))..)))))))))	chr18:2934192-2934452(-)$1	1	57	92	13.6084
..(((.((((((((((.....)))))))))).)))	chr12:46764775-46765072(-)$1	1	242	277	14.0974
.(((((.(..(((.((......)).)))..).)))	chr20:47881075-47881353(-)$1	1	119	154	13.0435
(((.(((.((((((((......)))..))).....	chr9:35065237-35065496(-)$1	1	157	192	12.1761
(((((((..(.(((((......))))))..))).)	chr7:100228304-100228615(-)$1	1	156	191	12.8953
.(.(((((((((.(((...))).))))))))).).	chr6:31506782-31507016(-)$1	1	4	39	14.0164
...(((.(((((((((...)))))))))...))).	chr2:89035152-89035400(+)$1	1	51	86	14.2578
(((((((((.((((((.....)))))).))).)))	chr9:139911213-139911473(-)$1	1	198	233	11.4779
((((((((((..((((.....))))...)))))))	chr5:90672324-90672559(-)$1	1	142	177	14.7822
((..(((((((.(((......))).)))))))...	chr4:128608725-128608972(+)$1	1	119	154	14.4651
(((((((...((((.(((...))).))))...)))	chr5:176732945-176733222(+)$1	1	235	270	12.1009
((((((((((((((((...))))).))))))))).	chr17:42400783-42401045(-)$1	1	80	115	12.1149

#PSSM
c : 0.14	e : 0.08	= : 0.08	g : 0.08	i : 0.07	b : 0.07	f : 0.07	: : 0.05	d : 0.05	! : 0.05	" : 0.05	[ : 0.03	h : 0.03	% : 0.01	' : 0.01	C : 0.01	] : 0.01	& : 0.01	
c : 0.17	g : 0.12	e : 0.10	i : 0.07	= : 0.07	: : 0.05	" : 0.05	[ : 0.05	d : 0.05	b : 0.05	f : 0.05	! : 0.03	# : 0.01	' : 0.01	h : 0.01	& : 0.01	a : 0.01	
c : 0.19	g : 0.10	= : 0.10	i : 0.08	e : 0.08	! : 0.07	" : 0.05	[ : 0.05	d : 0.05	f : 0.05	a : 0.03	b : 0.03	# : 0.01	h : 0.01	: : 0.01	
c : 0.17	i : 0.12	= : 0.12	g : 0.10	e : 0.08	[ : 0.07	" : 0.05	d : 0.05	! : 0.05	b : 0.05	# : 0.03	f : 0.03	: : 0.01	
c : 0.21	g : 0.16	= : 0.16	i : 0.14	d : 0.08	e : 0.05	[ : 0.05	" : 0.05	# : 0.03	! : 0.01	b : 0.01	
c : 0.23	i : 0.16	= : 0.16	g : 0.14	[ : 0.08	" : 0.07	d : 0.05	e : 0.03	b : 0.01	! : 0.01	# : 0.01	
c : 0.21	= : 0.17	g : 0.16	i : 0.14	d : 0.07	[ : 0.05	b : 0.03	a : 0.03	" : 0.03	e : 0.03	! : 0.01	# : 0.01	
= : 0.17	i : 0.17	g : 0.16	c : 0.12	[ : 0.10	d : 0.07	! : 0.05	" : 0.03	b : 0.03	e : 0.03	a : 0.01	
= : 0.19	i : 0.16	g : 0.12	! : 0.10	c : 0.08	b : 0.07	[ : 0.05	e : 0.05	d : 0.03	f : 0.03	h : 0.01	# : 0.01	a : 0.01	" : 0.01	
= : 0.17	i : 0.16	g : 0.14	b : 0.07	c : 0.07	! : 0.07	[ : 0.05	a : 0.05	e : 0.05	d : 0.03	f : 0.03	" : 0.03	h : 0.01	# : 0.01	
i : 0.16	= : 0.14	g : 0.12	c : 0.12	! : 0.08	e : 0.07	f : 0.05	" : 0.05	[ : 0.05	d : 0.03	b : 0.03	h : 0.01	# : 0.01	a : 0.01	
c : 0.16	i : 0.14	[ : 0.12	= : 0.12	! : 0.10	e : 0.08	" : 0.07	g : 0.05	f : 0.05	h : 0.01	# : 0.01	b : 0.01	d : 0.01	
c : 0.28	i : 0.10	= : 0.10	[ : 0.08	e : 0.08	d : 0.07	g : 0.05	f : 0.05	" : 0.05	a : 0.03	! : 0.03	h : 0.01	
c : 0.42	[ : 0.10	i : 0.08	= : 0.08	e : 0.07	d : 0.07	f : 0.05	h : 0.01	g : 0.01	o : 0.01	" : 0.01	b : 0.01	
c : 0.41	b : 0.16	[ : 0.08	e : 0.07	i : 0.07	o : 0.05	d : 0.05	= : 0.03	h : 0.01	g : 0.01	f : 0.01	
c : 0.26	o : 0.21	b : 0.14	a : 0.07	i : 0.07	e : 0.05	d : 0.05	[ : 0.03	= : 0.03	h : 0.01	g : 0.01	f : 0.01	
o : 0.48	n : 0.30	c : 0.07	l : 0.07	a : 0.03	m : 0.01	= : 0.01	
o : 0.51	n : 0.30	m : 0.07	l : 0.07	= : 0.01	c : 0.01	
o : 0.51	n : 0.30	l : 0.10	m : 0.07	
o : 0.49	n : 0.30	m : 0.07	c : 0.03	l : 0.03	a : 0.01	i : 0.01	e : 0.01	
o : 0.46	n : 0.30	c : 0.05	m : 0.05	i : 0.03	l : 0.03	] : 0.01	= : 0.01	e : 0.01	
c : 0.39	o : 0.30	i : 0.07	a : 0.05	b : 0.05	= : 0.05	g : 0.01	f : 0.01	d : 0.01	e : 0.01	
c : 0.39	b : 0.16	] : 0.08	i : 0.08	e : 0.05	= : 0.05	d : 0.05	o : 0.03	a : 0.01	h : 0.01	g : 0.01	f : 0.01	
c : 0.41	i : 0.12	b : 0.10	2 : 0.05	e : 0.05	= : 0.05	d : 0.05	] : 0.03	a : 0.03	f : 0.03	h : 0.01	g : 0.01	
] : 0.35	2 : 0.14	i : 0.12	c : 0.07	= : 0.07	f : 0.05	e : 0.05	d : 0.05	3 : 0.01	h : 0.01	g : 0.01	4 : 0.01	
c : 0.17	i : 0.16	= : 0.12	2 : 0.10	e : 0.10	g : 0.08	f : 0.05	3 : 0.05	d : 0.05	a : 0.03	h : 0.01	4 : 0.01	
i : 0.16	= : 0.16	c : 0.14	g : 0.10	e : 0.10	3 : 0.07	2 : 0.05	f : 0.05	4 : 0.03	b : 0.03	h : 0.01	> : 0.01	6 : 0.01	d : 0.01	
c : 0.16	i : 0.16	= : 0.16	g : 0.10	e : 0.07	b : 0.05	3 : 0.05	2 : 0.03	f : 0.03	] : 0.03	4 : 0.03	h : 0.01	> : 0.01	6 : 0.01	a : 0.01	d : 0.01	
= : 0.17	i : 0.14	g : 0.12	2 : 0.07	3 : 0.07	e : 0.07	d : 0.05	] : 0.05	c : 0.05	f : 0.03	b : 0.03	4 : 0.03	h : 0.01	a : 0.01	> : 0.01	6 : 0.01	
= : 0.17	g : 0.12	i : 0.12	2 : 0.08	3 : 0.07	c : 0.07	d : 0.05	] : 0.05	e : 0.05	4 : 0.05	a : 0.03	f : 0.01	h : 0.01	b : 0.01	> : 0.01	6 : 0.01	
= : 0.19	g : 0.12	c : 0.10	i : 0.08	d : 0.07	] : 0.07	3 : 0.07	a : 0.05	6 : 0.05	4 : 0.05	b : 0.03	2 : 0.01	e : 0.01	> : 0.01	f : 0.01	
= : 0.16	c : 0.14	g : 0.12	d : 0.10	i : 0.10	] : 0.08	b : 0.07	6 : 0.05	4 : 0.05	e : 0.01	> : 0.01	f : 0.01	2 : 0.01	3 : 0.01	
c : 0.19	= : 0.14	4 : 0.08	i : 0.08	b : 0.07	d : 0.07	g : 0.07	6 : 0.05	] : 0.05	e : 0.03	3 : 0.01	h : 0.01	> : 0.01	f : 0.01	: : 0.01	2 : 0.01	9 : 0.01	
c : 0.19	= : 0.14	4 : 0.08	i : 0.08	] : 0.07	6 : 0.07	g : 0.07	d : 0.05	3 : 0.03	b : 0.03	e : 0.03	h : 0.01	> : 0.01	f : 0.01	: : 0.01	a : 0.01	9 : 0.01	
c : 0.16	4 : 0.12	= : 0.12	g : 0.08	6 : 0.07	: : 0.05	d : 0.05	e : 0.05	i : 0.05	3 : 0.03	2 : 0.03	] : 0.03	> : 0.03	h : 0.01	a : 0.01	f : 0.01	9 : 0.01	

#score	746.6160539649085
#seq	56
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_CDS_m1_run1.txt

#BEAR
ddd"""bbuuuuuuuuuuuubb4444d	chr10:98292733-98293011(-)$1	278	146	173	17.5718
[eeeeewwwwwwwwwwwwwweeeee22	chr2:21229568-21229811(-)$1	243	191	218	18.3185
eeffffffvvvvvvvvvvvvvffffff	chr4:74321304-74321535(+)$1	231	165	192	16.1838
ccc[ddddrrrrrrrrrdddd]ccc22	chr15:44086012-44086250(+)$1	238	71	98	11.3802
fff[ddddtttttttttttdddd22ff	chr17:39976573-39976801(+)$1	228	81	108	16.4243
dddeeeeettttttttttteeeee333	chr2:242276811-242277094(+)$1	283	155	182	18.6356
e^^^^^^^^^^^^^^^^^^eeeee333	chr4:155533484-155533688(-)$1	204	61	88	16.2135
ggggggg^^^^^^^^^^^^^^^^^^gg	chr4:74320867-74321075(+)$1	208	135	162	15.4422
c:ffffffvvvvvvvvvvvvvffffff	chr3:52723113-52723414(+)$1	301	196	223	15.4850
c::ddddyyyyyyyyyyyyyyyydddd	chr4:83765405-83765654(-)$1	249	47	74	14.8899
''ddddwwwwwwwwwwwwwwdddd888	chr12:46760949-46761202(-)$1	253	181	208	16.3652
hh[bb^^^^^^^^^^^^^^^^^^^^^^	chr17:57917077-57917349(+)$1	272	98	125	15.1326
dddd[ccctttttttttttcccdddd:	chr4:74269985-74270190(+)$1	205	61	88	15.6948
eeeee[bbssssssssssbb]eeeee]	chr12:46755989-46756231(-)$1	242	176	203	11.6271
ccc[ddddrrrrrrrrrdddd]ccc22	chr15:44086050-44086261(+)$1	211	33	60	11.3802
e!!eeeee^^^^^^^^^^^^^^^^^^^	chr4:74269990-74270210(+)$1	220	57	84	16.1606
e!!eeeee^^^^^^^^^^^^^^^^^^^	chr4:74269976-74270185(+)$1	209	71	98	16.1606
ddddyyyyyyyyyyyyyyyydddd333	chr3:171851280-171851536(+)$1	256	116	143	17.9688
ccc[ddddtttttttttttdddd333c	chr7:139824259-139824537(-)$1	278	246	273	18.0520
c!!eeeeettttttttttteeeee333	chr10:101595926-101596181(+)$1	255	74	101	19.3330
c[eeeeeuuuuuuuuuuuueeeeeccc	chr3:149089428-149089676(-)$1	248	78	105	18.5082
+gggggggrrrrrrrrrgggggggccc	chr4:74301924-74302163(+)$1	239	179	206	9.6697
bb[eeeeerrrrrrrrreeeeebb]gg	chr3:42660490-42660771(+)$1	281	85	112	10.7739
eezzzzzzzzzzzzzzzzzeeeee22a	chr4:74275015-74275235(+)$1	220	46	73	13.0842
bb[eeeeesssssssssseeeee]bb]	chr14:23236500-23236720(+)$1	220	88	115	12.3171
cc!!cccrrrrrrrrrccc22ccc333	chr17:42398619-42398889(-)$1	270	155	182	11.5574
ggggg[bb^^^^^^^^^^^^^^^^^^^	chr10:114154622-114154875(+)$1	253	4	31	15.1138
d[ccceeeeerrrrrrrrreeeee333	chr9:95013903-95014209(-)$1	306	90	117	12.2203
dgggggggtttttttttttggggggg5	chr5:37327592-37327848(-)$1	256	20	47	16.1288
eeee[ddddssssssssssdddd]eee	chr2:21224868-21225119(-)$1	251	117	144	11.5930
c[ddddvvvvvvvvvvvvvddddccc]	chr5:42800902-42801139(-)$1	237	87	114	17.4649
ccc[ddddrrrrrrrrrddddccc333	chr1:110170999-110171261(+)$1	262	187	214	12.3661
bb"""cccvvvvvvvvvvvvvccc333	chr10:121336435-121336712(-)$1	277	29	56	18.8131
:gggggggtttttttttttggggggg:	chr6:26217065-26217332(+)$1	267	98	125	14.9197
dddd[ccctttttttttttccc]dddd	chr16:67174374-67174620(+)$1	246	14	41	16.1467
e^^^^^^^^^^^^^^^^^^eeeee333	chr4:155533443-155533684(-)$1	241	57	84	16.2135
ddd!!cccuuuuuuuuuuuuccc22dd	chr2:21230223-21230447(-)$1	224	186	213	17.9220
e^^^^^^^^^^^^^^^^^^eeeee:::	chr4:155533583-155533805(-)$1	222	178	205	12.7467
ffff!!cccssssssssssccc22fff	chr2:21233402-21233622(-)$1	220	24	51	11.2920
cc[cccyyyyyyyyyyyyyyyyccc]c	chr2:21228412-21228641(-)$1	229	21	48	17.7093
c!!eeeeezzzzzzzzzzzzzzzzzee	chr5:42807005-42807247(-)$1	242	16	43	12.9748
g!!ffffffrrrrrrrrrffffff22g	chr1:236703863-236704142(+)$1	279	158	185	10.4529
ggggggg^^^^^^^^^^^^^^^^^^gg	chr4:74320875-74321097(+)$1	222	127	154	15.4422
gggggyyyyyyyyyyyyyyyygggggg	chr10:102710393-102710655(+)$1	262	87	114	17.1567
dd^^^^^^^^^^^^^^^^^^dddd666	chr4:74269934-74270160(+)$1	226	50	77	14.7789
"""eeeeesssssssssseeeeegggg	chr15:69745949-69746160(+)$1	211	78	105	13.1521
%%%eeeeerrrrrrrrreeeeeccc]d	chr1:33252374-33252644(-)$1	270	109	136	10.1683
iiiiiiiivvvvvvvvvvvvviiiiii	chr6:31625418-31625691(+)$1	273	64	91	17.0232
eezzzzzzzzzzzzzzzzzeeeee22a	chr4:74275009-74275215(+)$1	206	52	79	13.0842
$$$eeeeerrrrrrrrreeeee>>>>>	chr14:23239357-23239621(+)$1	264	70	97	11.1910
gg::ddddvvvvvvvvvvvvvdddd:D	chr4:74303802-74304009(+)$1	207	83	110	13.8852
###dddd^^^^^^^^^^^^^^^^^^^^	chr17:37009249-37009459(-)$1	210	56	83	15.9377

#otherMatches

#Seq PSSM
AGCCCAACUUUCCUUGUCGUGUCAAUG	chr10:98292733-98293011(-)$1	278	146	173	17.5718
AUUGAUGCACUGCAGUACAAAUUAGAG	chr2:21229568-21229811(-)$1	243	191	218	18.3185
CAGAAAUAAAAUAUCUCCAAAUGUUUC	chr4:74321304-74321535(+)$1	231	165	192	16.1838
CCCUUUGCCCUGAGUCUGCAGCGGGUC	chr15:44086012-44086250(+)$1	238	71	98	11.3802
GACUUUGUUCGAUACCAUUACAACUGU	chr17:39976573-39976801(+)$1	228	81	108	16.4243
ACAUGGGUUUGUAAGUUUUACCCAAAC	chr2:242276811-242277094(+)$1	283	155	182	18.6356
AUAAUAAACUAGUGAAAUUUCUGUAUU	chr4:155533484-155533688(-)$1	204	61	88	16.2135
UUCAGGUAACAAAACAUUCAGACAAGC	chr4:74320867-74321075(+)$1	208	135	162	15.4422
CAACUCUGAUCUCAGCAAAGCCAGAGU	chr3:52723113-52723414(+)$1	301	196	223	15.4850
CUGCUGGUCAGCUUCCCACAUCUCCAG	chr4:83765405-83765654(-)$1	249	47	74	14.8899
ACAAUGUAUACCUAUCAUUUUAUUUCU	chr12:46760949-46761202(-)$1	253	181	208	16.3652
GGUGUGUUACUUCAUCCUAUCUAUCAU	chr17:57917077-57917349(+)$1	272	98	125	15.1326
GAAGUGGGUAACCUUUAUUUCCCUUCU	chr4:74269985-74270190(+)$1	205	61	88	15.6948
AUUAUAACCAUAGAAACAGUAAUAAUA	chr12:46755989-46756231(-)$1	242	176	203	11.6271
CCCUUUGCCCUGAGUCUGCAGCGGGUC	chr15:44086050-44086261(+)$1	211	33	60	11.3802
AAGUGGGUAACCUUUAUUUCCCUUCUU	chr4:74269990-74270210(+)$1	220	57	84	16.1606
AAGUGGGUAACCUUUAUUUCCCUUCUU	chr4:74269976-74270185(+)$1	209	71	98	16.1606
AUGUUUUUCUGUGUGUGUCUGCAUGUA	chr3:171851280-171851536(+)$1	256	116	143	17.9688
UCUUGGACUUUUAUGUUUUGUUCCUUA	chr7:139824259-139824537(-)$1	278	246	273	18.0520
AUUGACACCAACCAGAAAUGUGUCUUU	chr10:101595926-101596181(+)$1	255	74	101	19.3330
AAUGGAAUGUAUCUCUGUUUUCUAUCC	chr3:149089428-149089676(-)$1	248	78	105	18.5082
aaaauuuuuuaaauuauaaaauuuGCA	chr4:74301924-74302163(+)$1	239	179	206	9.6697
UGUGGUUAAAAACUUUAUGAUUCAGGG	chr3:42660490-42660771(+)$1	281	85	112	10.7739
CAAAAUUUAGAUACUUAUAUGAAAUUG	chr4:74275015-74275235(+)$1	220	46	73	13.0842
ACCUCUGCUAUCUCUUUUGCAGAAGUC	chr14:23236500-23236720(+)$1	220	88	115	12.3171
CUCCCAGCCCCAACCUCUGCCAGCCUA	chr17:42398619-42398889(-)$1	270	155	182	11.5574
AAAUAUGGCCAUUUCCUCUAAAUUUUC	chr10:114154622-114154875(+)$1	253	4	31	15.1138
AGUGUUCUGCUUUCUCUUUGCAGACUU	chr9:95013903-95014209(-)$1	306	90	117	12.2203
GCAACUCAGGCCACAAAUAUGAGUUGU	chr5:37327592-37327848(-)$1	256	20	47	16.1288
ACUUUACUUCCCAACUCUCAAGUCAAG	chr2:21224868-21225119(-)$1	251	117	144	11.5930
CAUCUGAUAUUUGAAAAAACAGGGUCU	chr5:42800902-42801139(-)$1	237	87	114	17.4649
AGGAGGGUAGGCAGAUGACCCCCUGAA	chr1:110170999-110171261(+)$1	262	187	214	12.3661
UUGUUUCGGUGAACGGUACUACGAUUG	chr10:121336435-121336712(-)$1	277	29	56	18.8131
UCAGUGGAUUGUUAGUUCUUCUGCUGU	chr6:26217065-26217332(+)$1	267	98	125	14.9197
AUUUAUGGUUAUUUUUUCCCUACAGAU	chr16:67174374-67174620(+)$1	246	14	41	16.1467
AUAAUAAACUAGUGAAAUUUCUGUAUU	chr4:155533443-155533684(-)$1	241	57	84	16.2135
AAUUCUUGAAAACGACAAAGCAAUCAU	chr2:21230223-21230447(-)$1	224	186	213	17.9220
AUAAUAAACUAGUGAAAUUUCUGUAUU	chr4:155533583-155533805(-)$1	222	178	205	12.7467
AAGCCCCAAGAAUUUACAAUUGUUGCU	chr2:21233402-21233622(-)$1	220	24	51	11.2920
CCUUUGUGUACACCAAAAACCCCAAUG	chr2:21228412-21228641(-)$1	229	21	48	17.7093
AUUUCUUCCCAAAUAUUUUAGAUUAGA	chr5:42807005-42807247(-)$1	242	16	43	12.9748
UGGUUUCUGAUGAGAUGGUAGAAAAAA	chr1:236703863-236704142(+)$1	279	158	185	10.4529
UUCAGGUAACAAAACAUUCAGACAAGC	chr4:74320875-74321097(+)$1	222	127	154	15.4422
UGUUCUCAUUCUUUUUCUUCUGGACAA	chr10:102710393-102710655(+)$1	262	87	114	17.1567
UAAUUUCCCUCCGUUUGUCCUAGCUUU	chr4:74269934-74270160(+)$1	226	50	77	14.7789
GUUGAGCCUUUUUGGCCUGGCUUGUUU	chr15:69745949-69746160(+)$1	211	78	105	13.1521
ACUCUCUGUUUUCUUCCUAGAGGCCAG	chr1:33252374-33252644(-)$1	270	109	136	10.1683
UGACUCCUAGGAAUCAAGGUAAGGGGU	chr6:31625418-31625691(+)$1	273	64	91	17.0232
CAAAAUUUAGAUACUUAUAUGAAAUUG	chr4:74275009-74275215(+)$1	206	52	79	13.0842
CUUUACCAGAAAAAACAUGGUAUUAAA	chr14:23239357-23239621(+)$1	264	70	97	11.1910
UUCAGGGCUACCAUAUUUUUUGCCCAG	chr4:74303802-74304009(+)$1	207	83	110	13.8852
GAUUGUGAUCUCUUUAUCCUGUUUCCC	chr17:37009249-37009459(-)$1	210	56	83	15.9377

#DB
(((...((............))....)	chr10:98292733-98293011(-)$1	1	146	173	17.5718
.(((((..............)))))..	chr2:21229568-21229811(-)$1	1	191	218	18.3185
))((((((.............))))))	chr4:74321304-74321535(+)$1	1	165	192	16.1838
(((.((((.........)))).)))..	chr15:44086012-44086250(+)$1	1	71	98	11.3802
(((.((((...........))))..))	chr17:39976573-39976801(+)$1	1	81	108	16.4243
((((((((...........)))))...	chr2:242276811-242277094(+)$1	1	155	182	18.6356
(..................)))))...	chr4:155533484-155533688(-)$1	1	61	88	16.2135
(((((((..................))	chr4:74320867-74321075(+)$1	1	135	162	15.4422
).((((((.............))))))	chr3:52723113-52723414(+)$1	1	196	223	15.4850
)..((((................))))	chr4:83765405-83765654(-)$1	1	47	74	14.8899
..((((..............))))...	chr12:46760949-46761202(-)$1	1	181	208	16.3652
((.((......................	chr17:57917077-57917349(+)$1	1	98	125	15.1326
((((.(((...........))))))).	chr4:74269985-74270190(+)$1	1	61	88	15.6948
(((((.((..........)).))))).	chr12:46755989-46756231(-)$1	1	176	203	11.6271
(((.((((.........)))).)))..	chr15:44086050-44086261(+)$1	1	33	60	11.3802
(..(((((...................	chr4:74269990-74270210(+)$1	1	57	84	16.1606
(..(((((...................	chr4:74269976-74270185(+)$1	1	71	98	16.1606
((((................))))...	chr3:171851280-171851536(+)$1	1	116	143	17.9688
(((.((((...........))))...)	chr7:139824259-139824537(-)$1	1	246	273	18.0520
(..(((((...........)))))...	chr10:101595926-101596181(+)$1	1	74	101	19.3330
(.(((((............))))))))	chr3:149089428-149089676(-)$1	1	78	105	18.5082
.(((((((.........))))))))))	chr4:74301924-74302163(+)$1	1	179	206	9.6697
((.(((((.........))))))).))	chr3:42660490-42660771(+)$1	1	85	112	10.7739
((.................)))))..)	chr4:74275015-74275235(+)$1	1	46	73	13.0842
((.(((((..........))))).)).	chr14:23236500-23236720(+)$1	1	88	115	12.3171
((..(((.........)))..)))...	chr17:42398619-42398889(-)$1	1	155	182	11.5574
(((((.((...................	chr10:114154622-114154875(+)$1	1	4	31	15.1138
(.((((((((.........)))))...	chr9:95013903-95014209(-)$1	1	90	117	12.2203
((((((((...........))))))).	chr5:37327592-37327848(-)$1	1	20	47	16.1288
((((.((((..........)))).)))	chr2:21224868-21225119(-)$1	1	117	144	11.5930
(.((((.............))))))).	chr5:42800902-42801139(-)$1	1	87	114	17.4649
(((.((((.........)))))))...	chr1:110170999-110171261(+)$1	1	187	214	12.3661
((...(((.............)))...	chr10:121336435-121336712(-)$1	1	29	56	18.8131
.(((((((...........))))))).	chr6:26217065-26217332(+)$1	1	98	125	14.9197
((((.(((...........))).))))	chr16:67174374-67174620(+)$1	1	14	41	16.1467
(..................)))))...	chr4:155533443-155533684(-)$1	1	57	84	16.2135
(((..(((............)))..))	chr2:21230223-21230447(-)$1	1	186	213	17.9220
(..................)))))...	chr4:155533583-155533805(-)$1	1	178	205	12.7467
((((..(((..........)))..)))	chr2:21233402-21233622(-)$1	1	24	51	11.2920
((.(((................))).)	chr2:21228412-21228641(-)$1	1	21	48	17.7093
(..(((((.................))	chr5:42807005-42807247(-)$1	1	16	43	12.9748
(..((((((.........))))))..)	chr1:236703863-236704142(+)$1	1	158	185	10.4529
(((((((..................))	chr4:74320875-74321097(+)$1	1	127	154	15.4422
(((((................))))))	chr10:102710393-102710655(+)$1	1	87	114	17.1567
((..................))))...	chr4:74269934-74270160(+)$1	1	50	77	14.7789
...(((((..........)))))))))	chr15:69745949-69746160(+)$1	1	78	105	13.1521
...(((((.........)))))))).)	chr1:33252374-33252644(-)$1	1	109	136	10.1683
((((((((.............))))))	chr6:31625418-31625691(+)$1	1	64	91	17.0232
((.................)))))..)	chr4:74275009-74275215(+)$1	1	52	79	13.0842
...(((((.........))))).....	chr14:23239357-23239621(+)$1	1	70	97	11.1910
))..((((.............)))).(	chr4:74303802-74304009(+)$1	1	83	110	13.8852
...((((....................	chr17:37009249-37009459(-)$1	1	56	83	15.9377

#PSSM
c : 0.23	e : 0.19	d : 0.17	g : 0.11	b : 0.05	f : 0.03	[ : 0.01	' : 0.01	h : 0.01	+ : 0.01	: : 0.01	" : 0.01	% : 0.01	i : 0.01	$ : 0.01	# : 0.01	
g : 0.15	d : 0.13	e : 0.11	c : 0.11	! : 0.09	^ : 0.05	[ : 0.05	b : 0.05	f : 0.03	: : 0.03	' : 0.01	h : 0.01	" : 0.01	% : 0.01	i : 0.01	$ : 0.01	# : 0.01	
d : 0.15	g : 0.13	! : 0.11	c : 0.09	e : 0.07	f : 0.07	^ : 0.07	[ : 0.07	: : 0.03	z : 0.03	" : 0.03	% : 0.01	i : 0.01	$ : 0.01	# : 0.01	
e : 0.26	g : 0.13	d : 0.13	[ : 0.09	f : 0.07	^ : 0.07	" : 0.03	z : 0.03	! : 0.03	c : 0.03	b : 0.01	i : 0.01	: : 0.01	
e : 0.24	d : 0.19	g : 0.13	^ : 0.07	f : 0.05	[ : 0.05	c : 0.05	" : 0.03	z : 0.03	! : 0.03	b : 0.01	y : 0.01	i : 0.01	
e : 0.24	d : 0.21	c : 0.11	^ : 0.09	g : 0.09	f : 0.05	[ : 0.03	y : 0.03	z : 0.03	" : 0.01	! : 0.01	i : 0.01	
e : 0.23	d : 0.17	c : 0.11	^ : 0.09	g : 0.09	b : 0.05	f : 0.05	y : 0.05	w : 0.03	z : 0.03	v : 0.01	i : 0.01	
e : 0.21	^ : 0.15	d : 0.13	c : 0.09	y : 0.07	b : 0.05	f : 0.05	g : 0.05	w : 0.03	z : 0.03	u : 0.01	r : 0.01	v : 0.01	i : 0.01	
^ : 0.21	r : 0.15	t : 0.15	v : 0.11	y : 0.07	u : 0.05	s : 0.05	z : 0.05	w : 0.03	e : 0.01	d : 0.01	c : 0.01	f : 0.01	
^ : 0.21	r : 0.17	t : 0.15	v : 0.11	s : 0.09	y : 0.07	u : 0.05	z : 0.05	w : 0.03	e : 0.01	
^ : 0.21	r : 0.19	t : 0.15	v : 0.11	s : 0.09	y : 0.07	u : 0.05	z : 0.05	w : 0.03	
^ : 0.21	r : 0.19	t : 0.15	v : 0.11	s : 0.09	y : 0.07	u : 0.05	z : 0.05	w : 0.03	
^ : 0.21	r : 0.19	t : 0.15	v : 0.11	s : 0.09	y : 0.07	u : 0.05	z : 0.05	w : 0.03	
^ : 0.21	r : 0.19	t : 0.15	v : 0.11	s : 0.09	y : 0.07	u : 0.05	z : 0.05	w : 0.03	
^ : 0.21	r : 0.19	t : 0.15	v : 0.11	s : 0.09	y : 0.07	u : 0.05	z : 0.05	w : 0.03	
^ : 0.21	r : 0.19	t : 0.15	v : 0.11	s : 0.09	y : 0.07	u : 0.05	z : 0.05	w : 0.03	
^ : 0.21	r : 0.17	t : 0.15	v : 0.11	s : 0.09	y : 0.07	u : 0.05	z : 0.05	w : 0.03	c : 0.01	
^ : 0.21	t : 0.15	v : 0.11	s : 0.09	y : 0.07	u : 0.05	d : 0.05	e : 0.05	z : 0.05	w : 0.03	r : 0.03	g : 0.01	c : 0.01	
^ : 0.21	t : 0.15	v : 0.11	e : 0.09	y : 0.07	u : 0.05	d : 0.05	z : 0.05	w : 0.03	s : 0.03	b : 0.01	g : 0.01	c : 0.01	r : 0.01	f : 0.01	
e : 0.26	^ : 0.15	d : 0.13	v : 0.09	y : 0.07	c : 0.05	g : 0.05	u : 0.03	w : 0.03	b : 0.01	2 : 0.01	z : 0.01	f : 0.01	
e : 0.28	d : 0.19	^ : 0.13	v : 0.09	c : 0.07	y : 0.05	g : 0.05	b : 0.01	] : 0.01	2 : 0.01	z : 0.01	f : 0.01	
e : 0.30	d : 0.15	^ : 0.13	c : 0.13	g : 0.07	f : 0.05	] : 0.03	y : 0.03	b : 0.01	z : 0.01	i : 0.01	
e : 0.24	d : 0.17	c : 0.15	^ : 0.13	g : 0.07	f : 0.05	4 : 0.01	y : 0.01	b : 0.01	] : 0.01	2 : 0.01	z : 0.01	i : 0.01	> : 0.01	
e : 0.21	c : 0.15	^ : 0.13	d : 0.13	g : 0.09	f : 0.05	2 : 0.05	] : 0.03	4 : 0.01	3 : 0.01	b : 0.01	z : 0.01	i : 0.01	> : 0.01	
3 : 0.19	c : 0.13	^ : 0.13	2 : 0.09	d : 0.07	g : 0.07	e : 0.05	f : 0.05	4 : 0.01	8 : 0.01	] : 0.01	b : 0.01	: : 0.01	z : 0.01	6 : 0.01	i : 0.01	> : 0.01	
3 : 0.19	g : 0.13	2 : 0.11	^ : 0.09	f : 0.07	d : 0.07	e : 0.05	c : 0.05	: : 0.03	] : 0.03	4 : 0.01	8 : 0.01	b : 0.01	6 : 0.01	i : 0.01	> : 0.01	
3 : 0.17	g : 0.11	d : 0.09	^ : 0.09	f : 0.07	c : 0.07	2 : 0.05	: : 0.05	] : 0.05	a : 0.03	e : 0.03	8 : 0.01	5 : 0.01	6 : 0.01	i : 0.01	> : 0.01	D : 0.01	

#score	770.2298599070385
#seq	52
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF513PTZ_TAF15_UTR_m2_run2.txt

#BEAR
f$$$$$eeeeennnnneeeee33	chr15:67391098-67391418(+)$1	320	236	259	9.8218
dd[dddd[ddddnnnnndddd]d	chr11:18034165-18034427(-)$1	262	149	172	9.8696
ccc[bb!!ddddnnnnndddd]b	chr14:24776731-24777073(+)$1	342	31	54	10.9353
ffff"""ddddooooooddddff	chr13:111287201-111287577(+)$1	376	79	102	13.4042
[ccc[ffffffooooooffffff	chrX:17755994-17756257(+)$1	263	86	109	9.1143
eee"""eeeeeooooooeeeee7	chr17:75423182-75423438(+)$1	256	22	45	11.1160
3ffffffddddoooooodddd::	chr6:47867380-47867682(-)$1	302	192	215	10.8729
ddd$$$$$cccooooooccc444	chr2:37333056-37333342(-)$1	286	16	39	10.7030
gggggggddddoooooodddd]g	chr17:75423121-75423382(+)$1	261	48	71	13.2997
e!!ccc[ddddoooooodddd33	chr2:173472384-173472693(+)$1	309	249	272	14.0607
fffccc[ddddnnnnndddd333	chr8:144678717-144679001(-)$1	284	170	193	12.3055
gggggg[ddddnnnnndddd22g	chr2:17722457-17722728(+)$1	271	185	208	11.4842
ffffgggggggoooooogggggg	chr1:2325752-2326056(+)$1	304	243	266	10.2368

#otherMatches

#Seq PSSM
GCGUAUGUCCUGAGCGAGGAUCA	chr15:67391098-67391418(+)$1	320	236	259	9.8218
GGGGUCAGGGCCGGAGGGGCUGU	chr11:18034165-18034427(-)$1	262	149	172	9.8696
CUUGGUGAGUGUAAAGGGCAUGA	chr14:24776731-24777073(+)$1	342	31	54	10.9353
CGCUUGGAUUGGAUGAACGAUGG	chr13:111287201-111287577(+)$1	376	79	102	13.4042
AUUCUCCUGUCAGGGGAGGCAGG	chrX:17755994-17756257(+)$1	263	86	109	9.1143
CCUUGGGGGAGGCUGAGCUCCCA	chr17:75423182-75423438(+)$1	256	22	45	11.1160
aaguucuuucagguugaugaaau	chr6:47867380-47867682(-)$1	302	192	215	10.8729
ccaacaaaugugaugagacaaua	chr2:37333056-37333342(-)$1	286	16	39	10.7030
GUCAGAGACAGAGGUCCCUGUGC	chr17:75423121-75423382(+)$1	261	48	71	13.2997
UGAUCUAGAAAUGAUAUUUUUAA	chr2:173472384-173472693(+)$1	309	249	272	14.0607
CCUGGCAGCAGAAGAACUGUGUA	chr8:144678717-144679001(-)$1	284	170	193	12.3055
AGAUUGGUAUGGAAAUCAUGGUU	chr2:17722457-17722728(+)$1	271	185	208	11.4842
aguuuucuuaucuguaaaugaga	chr1:2325752-2326056(+)$1	304	243	266	10.2368

#DB
(.....(((((.....)))))..	chr15:67391098-67391418(+)$1	1	236	259	9.8218
((.((((.((((.....)))).)	chr11:18034165-18034427(-)$1	1	149	172	9.8696
(((.((..((((.....)))).)	chr14:24776731-24777073(+)$1	1	31	54	10.9353
((((...((((......))))))	chr13:111287201-111287577(+)$1	1	79	102	13.4042
.(((.((((((......))))))	chrX:17755994-17756257(+)$1	1	86	109	9.1143
(((...(((((......))))).	chr17:75423182-75423438(+)$1	1	22	45	11.1160
.))))))((((......))))..	chr6:47867380-47867682(-)$1	1	192	215	10.8729
(((.....(((......)))...	chr2:37333056-37333342(-)$1	1	16	39	10.7030
(((((((((((......)))).)	chr17:75423121-75423382(+)$1	1	48	71	13.2997
(..(((.((((......))))..	chr2:173472384-173472693(+)$1	1	249	272	14.0607
)))(((.((((.....))))...	chr8:144678717-144679001(-)$1	1	170	193	12.3055
((((((.((((.....))))..)	chr2:17722457-17722728(+)$1	1	185	208	11.4842
(((((((((((......))))))	chr1:2325752-2326056(+)$1	1	243	266	10.2368

#PSSM
f : 0.30	d : 0.15	e : 0.15	g : 0.15	c : 0.07	[ : 0.07	3 : 0.07	
f : 0.30	d : 0.15	c : 0.15	g : 0.15	$ : 0.07	e : 0.07	! : 0.07	
f : 0.30	c : 0.15	g : 0.15	$ : 0.07	[ : 0.07	e : 0.07	d : 0.07	! : 0.07	
f : 0.23	c : 0.23	$ : 0.15	g : 0.15	d : 0.07	[ : 0.07	" : 0.07	
g : 0.23	$ : 0.15	" : 0.15	c : 0.15	d : 0.07	b : 0.07	[ : 0.07	f : 0.07	
g : 0.23	$ : 0.15	" : 0.15	f : 0.15	c : 0.15	d : 0.07	b : 0.07	
[ : 0.23	e : 0.15	f : 0.15	g : 0.15	d : 0.07	! : 0.07	" : 0.07	$ : 0.07	
d : 0.46	e : 0.15	[ : 0.07	! : 0.07	f : 0.07	$ : 0.07	g : 0.07	
d : 0.61	e : 0.15	f : 0.07	c : 0.07	g : 0.07	
d : 0.61	e : 0.15	f : 0.07	c : 0.07	g : 0.07	
d : 0.61	e : 0.15	f : 0.07	c : 0.07	g : 0.07	
o : 0.61	n : 0.23	d : 0.15	
o : 0.61	n : 0.38	
o : 0.61	n : 0.38	
o : 0.61	n : 0.38	
o : 0.61	n : 0.38	
o : 0.61	n : 0.15	d : 0.15	e : 0.07	
d : 0.61	e : 0.15	f : 0.07	c : 0.07	g : 0.07	
d : 0.61	e : 0.15	f : 0.07	c : 0.07	g : 0.07	
d : 0.61	e : 0.15	f : 0.07	c : 0.07	g : 0.07	
d : 0.46	e : 0.15	f : 0.07	4 : 0.07	3 : 0.07	2 : 0.07	g : 0.07	
3 : 0.23	] : 0.23	f : 0.15	e : 0.07	: : 0.07	4 : 0.07	2 : 0.07	g : 0.07	
3 : 0.23	g : 0.23	f : 0.15	d : 0.07	b : 0.07	7 : 0.07	: : 0.07	4 : 0.07	

#score	147.22450730623078
#seq	13
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_UTR_m1_run2.txt

#BEAR
###ggggggg[bb[bbmmmmbb333bb333gggg	chr19:49118989-49119225(-)$1	236	107	141	13.3286
ggggggg[ccc!!cccmmmmccc]ccc]gggggg	chr11:67207116-67207361(-)$1	245	150	184	15.8485
eeeeggggggg[ddddmmmmddddggggggg22e	chr15:40679311-40679558(+)$1	247	201	235	12.2294
"""iiiiiiiii[bboooooobb]iiiiiiiii4	chr8:74204772-74205027(-)$1	255	159	193	13.4746
d!!ccc[ccc!!bboooooobb22ccc]ccc22d	chr19:1811761-1812021(-)$1	260	159	193	11.3519
#=============oooooo=============f	chr19:6741126-6741377(+)$1	251	61	95	14.4398
bbbb[ccc[ccc[cccnnnnnccc333ccc]ccc	chr3:9876527-9876752(+)$1	225	125	159	12.1204
[ggggggg[bbcccooooooccc]bb]ggggggg	chr22:20891400-20891618(+)$1	218	150	184	12.8519
ii[a[dddd!!a[cccnnnnnccc]a]dddd333	chr17:76120139-76120385(-)$1	246	34	68	12.0864
eeea[ccc[bb[ddddmmmmddddbbccc]a444	chr15:65822983-65823202(+)$1	219	90	124	12.0099
=======[bb!!cccnnnnnccc22bb]======	chr15:93545444-93545719(+)$1	275	227	261	13.6472
ccc[dddd$$$$$cccmmmmccc22dddd333cc	chr8:144658841-144659071(-)$1	230	180	214	13.6308
[ccc[ggggggg[cccmmmmccc]ggggggg]cc	chr2:136511740-136511991(+)$1	251	150	184	15.9613
f"""dddd[ccc[cccmmmmccc]ccc]ddddff	chr12:120110163-120110435(+)$1	272	8	42	13.4531
ccc[==========[ammmma]==========]c	chr10:135113519-135113748(-)$1	229	138	172	15.3162
cccbb!!ccc[cccooooooccc]ccc22bb444	chr1:19653016-19653276(+)$1	260	57	91	12.4088
[ccc"""==========lll==========ccc]	chr19:5663902-5664146(+)$1	244	80	114	14.0118
""ccc!!ccc!!ddddmmmmdddd22ccc4444c	chr16:67201746-67201993(+)$1	247	28	62	13.7993
!hhhhhhhh####cccmmmmccc22hhhhhhhh2	chr2:9770568-9770812(-)$1	244	141	175	13.1441
[ccc[a[iiiiiiiiimmmmiiiiiiiii]a]cc	chr9:134003005-134003238(+)$1	233	128	162	14.5469
[eeeee!!ccc[ddddmmmmdddd]ccc22eeee	chr6:7889541-7889828(-)$1	287	180	214	11.5712
iiiiiiiii####cccmmmmccc4444iiiiiii	chr3:47033823-47034084(+)$1	261	32	66	17.0329
=========####cccmmmmccc>>>>>>>>>>>	chr10:75519254-75519507(+)$1	253	178	212	14.1221
FF:iiiiiiiii[ccclllccciiiiiiiiiddd	chr12:42631800-42632059(-)$1	259	129	163	11.9937
b####ccc!!bb[cccmmmmccc]bb]ccc333b	chr16:84651329-84651544(-)$1	215	156	190	14.8558
dddd[ccc$$$$$cccmmmmcccccc]ddddbbc	chr11:64534609-64534845(-)$1	236	128	162	12.2777
d[eeeee"""ccccccmmmmccc]ccc4444eee	chr19:10431180-10431431(-)$1	251	80	114	13.5715
bbggggggg[a[ddddmmmmdddda]ggggggg3	chr15:49913254-49913501(+)$1	247	104	138	13.1656
cbb[bb[ccc[a[cccmmmmccc]a]ccc]bbbb	chr19:54024930-54025182(+)$1	252	86	120	13.7556
a!!bbggggggg!!bbmmmmbb22ggggggg]bb	chr1:16934817-16935104(-)$1	287	12	46	12.5382
iiiiiiiii####cccmmmmccciiiiiiiii22	chr10:135096469-135096682(-)$1	213	69	103	16.4762
cc[bb[bb[ccc[cccmmmmcccccc]bbbb]cc	chr17:40129140-40129386(-)$1	246	116	150	12.7250
=========!!a[cccmmmmccc]a22=======	chr4:1956966-1957175(+)$1	209	111	145	17.3947
hhhhhhh!!ddddcccmmmmccc]dddd4444hh	chr3:50368630-50368865(-)$1	235	88	122	11.9938
:===========[ccclllccc===========:	chr11:62378230-62378452(-)$1	222	161	195	13.9814
dddd[ddddccc[cccmmmmccc22ccc22dddd	chr2:10588058-10588347(-)$1	289	50	84	12.9025
[ccc[ccc####cccnnnnnccc333cccccc77	chr11:122929630-122929859(-)$1	229	52	86	12.8427
=====!!bb[a[ddddmmmmddddabb]======	chr15:49913224-49913454(+)$1	230	134	168	13.6120
[ccc!!ccc[ddddoooooodddd22ccc333cc	chr16:2499809-2500054(+)$1	245	110	144	11.9964
========!!eeeeeammmma]eeeee22=====	chr2:220044376-220044635(+)$1	259	151	185	12.6663
ggggdddd!!bb[cccmmmmccc22bb22ddddF	chr17:41150407-41150634(+)$1	227	18	52	12.4113
b"""ccc[ccc!!ccclllcccccc22ccc22bb	chr19:1271952-1272158(+)$1	206	88	122	12.6615
dddd!!ggggggg[ccclllccc]ggggggg333	chr17:26970512-26970728(-)$1	216	44	78	13.4679
BB:ggggggg[a[cccmmmmccc]a]gggggggd	chr19:50062075-50062362(-)$1	287	128	162	13.1259
hhhh"""iiiiiiiiimmmmiiiiiiiiihhhhh	chr19:47181795-47182086(-)$1	291	116	150	12.5405
ggggg"""ccc!!cccmmmmccc4444cccgggg	chr5:140075330-140075574(+)$1	244	91	125	15.7229
============!!bblllbb333==========	chr7:36429555-36429805(+)$1	250	49	83	14.3954
e!!ggggggg####bbmmmmbb333ggggggg]e	chr3:184044196-184044438(+)$1	242	28	62	14.2669
:==========[ddddllldddd]==========	chr17:45696429-45696713(+)$1	284	128	162	13.4028
[ccc####ccc[cccnnnnnccc333ccc4444c	chr12:114255773-114256046(-)$1	273	72	106	13.7232
b[dddd[ccc[a[cccmmmmccc]a]ccc22ddd	chr16:2273671-2273909(+)$1	238	28	62	14.2290
ggg:gggggggbb[ccclllccc]bb333ggggg	chr16:89760963-89761210(+)$1	247	205	239	11.9087

#otherMatches

#Seq PSSM
CCAGCCCUGCCCUCUCCCCAGACUCAGCCUGCAG	chr19:49118989-49119225(-)$1	236	107	141	13.3286
GCGGGCCAUGCAGUUGUGACCAGGGCGAGGCCUG	chr11:67207116-67207361(-)$1	245	150	184	15.8485
cuggguuccaccucaggaaccugaguggaauuuu	chr15:40679311-40679558(+)$1	247	201	235	12.2294
GAUGAGGUGAAUGUUCUUGGCAAGAUUUACUUCC	chr8:74204772-74205027(-)$1	255	159	193	13.4746
GCCAUUUGAGCAUUCUCUCCAACUCUCCAAUCCC	chr19:1811761-1812021(-)$1	260	159	193	11.3519
CGGUGGGAGGGCUGCGGGCUCAGCCCUCCUACCU	chr19:6741126-6741377(+)$1	251	61	95	14.4398
GGGCACAGGCAGAGGGCAGCUCCCAGGCUGGCUG	chr3:9876527-9876752(+)$1	225	125	159	12.1204
GACUCUGGAACCCCUCUGUUGGGUGUCCUAGGGU	chr22:20891400-20891618(+)$1	218	150	184	12.8519
CUCCUCCUGCUCUGCCCCUGUGGCUGUCAGGCCU	chr17:76120139-76120385(-)$1	246	34	68	12.0864
CGGCGGGAAGCGCGCGGGAUCGCGGCUCCGGGUA	chr15:65822983-65823202(+)$1	219	90	124	12.0099
AUGGGUGGGGCCGUUGAUGGGAUACCUGCACCUG	chr15:93545444-93545719(+)$1	275	227	261	13.6472
GGGCAGCCUUUGUGGCCUAUGCCUUGGCUUUUCC	chr8:144658841-144659071(-)$1	230	180	214	13.6308
GAAUUGGAuuuuuuuuuuugagauggagucucgu	chr2:136511740-136511991(+)$1	251	150	184	15.9613
CAGGCUCGGCCAACGGUGUUUCGAUGGACGGGGG	chr12:120110163-120110435(+)$1	272	8	42	13.4531
UUGCAGAGUUUUCUCGUACUCCAGAAGACUUUCU	chr10:135113519-135113748(-)$1	229	138	172	15.3162
GCGUGUUGUACCUGCUUUCCCGGCUGCCUCAGAU	chr1:19653016-19653276(+)$1	260	57	91	12.4088
UACAUUUGGGGUGGGGGAUCCCUCUAUCUCUGUC	chr19:5663902-5664146(+)$1	244	80	114	14.0118
AAGGGAGCUUCAGCCCCGAGGGGCCCAGGAAUGC	chr16:67201746-67201993(+)$1	247	28	62	13.7993
CUCCGCAGCUCUCGAGGCUCCUCCCGCUGCGGGU	chr2:9770568-9770812(-)$1	244	141	175	13.1441
UAGAGAGAGGAGUAUGGUGGCAUGCUCUUGUGUU	chr9:134003005-134003238(+)$1	233	128	162	14.5469
ACAGUGAAUUGCCAAUCUUGAUUGUUAGGGCACU	chr6:7889541-7889828(-)$1	287	180	214	11.5712
GGGCAGGGCACCUGGCAGCUGCCCCUGGUCCUGC	chr3:47033823-47034084(+)$1	261	32	66	17.0329
CACCUGUGCUUCAGCCCUAUGGCCCUCCCCCGAC	chr10:75519254-75519507(+)$1	253	178	212	14.1221
ggACUGUGCGGGCGGCAGGGCCCUCGUGCAGGGC	chr12:42631800-42632059(-)$1	259	129	163	11.9937
GUGCACCGAGCCGGCCUCCAGGCGGGACGGAUUC	chr16:84651329-84651544(-)$1	215	156	190	14.8558
ACCUGGGAAGUACGCCUGUGGGCUCUGGGGUCUA	chr11:64534609-64534845(-)$1	236	128	162	12.2777
UACAGCUUCGACUACCCCUCGGUGAGUGCCUGGC	chr19:10431180-10431431(-)$1	251	80	114	13.5715
CCUCUCUGGAGACCAGUGGUCUGGCCCCAGAGGU	chr15:49913254-49913501(+)$1	247	104	138	13.1656
GAGUGUGCGGCUGUGACUGGUCGGGAUCGGGCCU	chr19:54024930-54025182(+)$1	252	86	120	13.7556
GAGGCCCUGAUGUAGAAACUUCCCCAUUGGGUGC	chr1:16934817-16935104(-)$1	287	12	46	12.5382
CUGUGUGCGUCAUGUUCACCAACUGCAUGCAGGU	chr10:135096469-135096682(-)$1	213	69	103	16.4762
GCCUGCUGUUCUUGGGAGUUCCCAGAUCACAAGC	chr17:40129140-40129386(-)$1	246	116	150	12.7250
UGGGGGUGUCUGCGGCACACGCCUCUCACACUCC	chr4:1956966-1957175(+)$1	209	111	145	17.3947
UGGGGAGGUGAACGUGAGUACAUAGUUCUUAGUU	chr3:50368630-50368865(-)$1	235	88	122	11.9938
UCCCUCACCUCACAUCCCUGGUUGGGGUGGGGGG	chr11:62378230-62378452(-)$1	222	161	195	13.9814
GGCGUCUGCGCUUCCCCAUGGGGCUGGCCUGCGG	chr2:10588058-10588347(-)$1	289	50	84	12.9025
UCACUACCUAUUCUGACAACCAGCCUGGUGUGCU	chr11:122929630-122929859(-)$1	229	52	86	12.8427
CCUCUCUGGAGACCAGUGGUCUGGCCCCAGAGGU	chr15:49913224-49913454(+)$1	230	134	168	13.6120
AGUUUUggccgggcgcagaggcucaugccuguaa	chr16:2499809-2500054(+)$1	245	110	144	11.9964
UCCUGCUUGCUGGUGCCAGUGUCACCAUGGAGCA	chr2:220044376-220044635(+)$1	259	151	185	12.6663
GUGAAAGGUUAGCGGAAGUGUCCUUCUUUCCUUU	chr17:41150407-41150634(+)$1	227	18	52	12.4113
GACAGUUACGGUAAGUCACACUCCGAGGGCGCCA	chr19:1271952-1272158(+)$1	206	88	122	12.6615
GUUUUAGGAAAUUGAUAACCUGUGGAUUUCCAGC	chr17:26970512-26970728(-)$1	216	44	78	13.4679
CCAGAUGGCUACCUGUAUGAGCGUGAGGCCAUCC	chr19:50062075-50062362(-)$1	287	128	162	13.1259
UGGGUGCGGCUCCAUCACCUGGUGGAGCCUCCAU	chr19:47181795-47182086(-)$1	291	116	150	12.5405
CUCAUUAAGGUGAGGCCAGGGCUGAGAACUGUGG	chr5:140075330-140075574(+)$1	244	91	125	15.7229
UCCAUCGUCUCGUAGUCCGACGCCUGGGGCGAUG	chr7:36429555-36429805(+)$1	250	49	83	14.3954
AUUCACUACCUGUUUGGUUGCAUAUGGUGGUGCU	chr3:184044196-184044438(+)$1	242	28	62	14.2669
UAAUCAUGGAUAUUAUUUAGUGACAUCCAUGAUU	chr17:45696429-45696713(+)$1	284	128	162	13.4028
ugaucugggcucaccucccugguucaagcgauug	chr12:114255773-114256046(-)$1	273	72	106	13.7232
CAGUUGCGGCGGUGGCGGCGGCCUUGGCCCCCAG	chr16:2273671-2273909(+)$1	238	28	62	14.2290
GGGCACGCCCAGUGAGAACAUCUGGCCGGUGGGC	chr16:89760963-89761210(+)$1	247	205	239	11.9087

#DB
...(((((((.((.((....))...))...))))	chr19:49118989-49119225(-)$1	1	107	141	13.3286
(((((((.(((..(((....))).))).))))))	chr11:67207116-67207361(-)$1	1	150	184	15.8485
(((((((((((.((((....)))))))))))..)	chr15:40679311-40679558(+)$1	1	201	235	12.2294
...(((((((((.((......)).))))))))).	chr8:74204772-74205027(-)$1	1	159	193	13.4746
(..(((.(((..((......))..))).)))..)	chr19:1811761-1812021(-)$1	1	159	193	11.3519
.(((((((((((((......))))))))))))))	chr19:6741126-6741377(+)$1	1	61	95	14.4398
((((.(((.(((.(((.....)))...))).)))	chr3:9876527-9876752(+)$1	1	125	159	12.1204
.(((((((.(((((......))).)).)))))))	chr22:20891400-20891618(+)$1	1	150	184	12.8519
((.(.((((..(.(((.....))).).))))...	chr17:76120139-76120385(-)$1	1	34	68	12.0864
((((.(((.((.((((....))))))))).)...	chr15:65822983-65823202(+)$1	1	90	124	12.0099
(((((((.((..(((.....)))..)).))))))	chr15:93545444-93545719(+)$1	1	227	261	13.6472
(((.((((.....(((....)))..))))...))	chr8:144658841-144659071(-)$1	1	180	214	13.6308
.(((.(((((((.(((....))).))))))).))	chr2:136511740-136511991(+)$1	1	150	184	15.9613
(...((((.(((.(((....))).))).))))))	chr12:120110163-120110435(+)$1	1	8	42	13.4531
(((.((((((((((.(....).)))))))))).)	chr10:135113519-135113748(-)$1	1	138	172	15.3162
(((((..(((.(((......))).)))..))...	chr1:19653016-19653276(+)$1	1	57	91	12.4088
.(((...((((((((((...))))))))))))).	chr19:5663902-5664146(+)$1	1	80	114	14.0118
..(((..(((..((((....))))..)))....)	chr16:67201746-67201993(+)$1	1	28	62	13.7993
.((((((((....(((....)))..)))))))).	chr2:9770568-9770812(-)$1	1	141	175	13.1441
.(((.(.(((((((((....))))))))).).))	chr9:134003005-134003238(+)$1	1	128	162	14.5469
.(((((..(((.((((....)))).)))..))))	chr6:7889541-7889828(-)$1	1	180	214	11.5712
(((((((((....(((....)))....)))))))	chr3:47033823-47034084(+)$1	1	32	66	17.0329
(((((((((....(((....)))...........	chr10:75519254-75519507(+)$1	1	178	212	14.1221
((.(((((((((.(((...))))))))))))(((	chr12:42631800-42632059(-)$1	1	129	163	11.9937
(....(((..((.(((....))).)).)))...)	chr16:84651329-84651544(-)$1	1	156	190	14.8558
((((.(((.....(((....)))))).)))))))	chr11:64534609-64534845(-)$1	1	128	162	12.2777
(.(((((...((((((....))).)))....)))	chr19:10431180-10431431(-)$1	1	80	114	13.5715
(((((((((.(.((((....))))).))))))).	chr15:49913254-49913501(+)$1	1	104	138	13.1656
(((.((.(((.(.(((....))).).))).))))	chr19:54024930-54025182(+)$1	1	86	120	13.7556
(..(((((((((..((....))..))))))).))	chr1:16934817-16935104(-)$1	1	12	46	12.5382
(((((((((....(((....))))))))))))..	chr10:135096469-135096682(-)$1	1	69	103	16.4762
((.((.((.(((.(((....)))))).)))).))	chr17:40129140-40129386(-)$1	1	116	150	12.7250
(((((((((..(.(((....))).)..)))))))	chr4:1956966-1957175(+)$1	1	111	145	17.3947
(((((((..(((((((....))).))))....))	chr3:50368630-50368865(-)$1	1	88	122	11.9938
.(((((((((((.(((...)))))))))))))).	chr11:62378230-62378452(-)$1	1	161	195	13.9814
((((.(((((((.(((....)))..)))..))))	chr2:10588058-10588347(-)$1	1	50	84	12.9025
.(((.(((....(((.....)))...))))))..	chr11:122929630-122929859(-)$1	1	52	86	12.8427
(((((..((.(.((((....))))))).))))))	chr15:49913224-49913454(+)$1	1	134	168	13.6120
.(((..(((.((((......))))..)))...))	chr16:2499809-2500054(+)$1	1	110	144	11.9964
((((((((..((((((....).)))))..)))))	chr2:220044376-220044635(+)$1	1	151	185	12.6663
))))((((..((.(((....)))..))..))))(	chr17:41150407-41150634(+)$1	1	18	52	12.4113
(...(((.(((..(((...))))))..)))..))	chr19:1271952-1272158(+)$1	1	88	122	12.6615
((((..(((((((.(((...))).)))))))...	chr17:26970512-26970728(-)$1	1	44	78	13.4679
((.(((((((.(.(((....))).).)))))))(	chr19:50062075-50062362(-)$1	1	128	162	13.1259
((((...(((((((((....))))))))))))))	chr19:47181795-47182086(-)$1	1	116	150	12.5405
(((((...(((..(((....)))....)))))))	chr5:140075330-140075574(+)$1	1	91	125	15.7229
((((((((((((..((...))...))))))))))	chr7:36429555-36429805(+)$1	1	49	83	14.3954
(..(((((((....((....))...))))))).)	chr3:184044196-184044438(+)$1	1	28	62	14.2669
.((((((((((.((((...)))).))))))))))	chr17:45696429-45696713(+)$1	1	128	162	13.4028
.(((....(((.(((.....)))...)))....)	chr12:114255773-114256046(-)$1	1	72	106	13.7232
(.((((.(((.(.(((....))).).)))..)))	chr16:2273671-2273909(+)$1	1	28	62	14.2290
))).(((((((((.(((...))).))...)))))	chr16:89760963-89761210(+)$1	1	205	239	11.9087

#PSSM
[ : 0.15	= : 0.11	d : 0.09	b : 0.09	c : 0.09	g : 0.07	e : 0.05	i : 0.05	# : 0.03	" : 0.03	h : 0.03	: : 0.03	f : 0.01	! : 0.01	F : 0.01	a : 0.01	B : 0.01	
c : 0.19	= : 0.17	g : 0.09	" : 0.07	e : 0.05	! : 0.05	b : 0.05	i : 0.05	h : 0.05	d : 0.05	# : 0.03	[ : 0.03	F : 0.01	B : 0.01	
c : 0.19	= : 0.17	g : 0.11	e : 0.07	d : 0.07	" : 0.05	! : 0.05	h : 0.05	# : 0.03	b : 0.03	[ : 0.03	i : 0.03	: : 0.03	
= : 0.17	g : 0.15	c : 0.15	i : 0.07	b : 0.07	d : 0.07	e : 0.05	[ : 0.05	h : 0.05	a : 0.03	" : 0.03	# : 0.01	: : 0.01	
= : 0.19	g : 0.17	[ : 0.15	i : 0.07	d : 0.07	b : 0.07	c : 0.05	" : 0.03	h : 0.03	e : 0.03	# : 0.03	! : 0.03	
g : 0.19	= : 0.17	c : 0.13	d : 0.11	! : 0.09	i : 0.07	" : 0.05	h : 0.03	e : 0.03	a : 0.01	b : 0.01	[ : 0.01	# : 0.01	
g : 0.21	= : 0.17	c : 0.13	d : 0.09	i : 0.07	[ : 0.07	! : 0.07	" : 0.05	h : 0.03	e : 0.01	b : 0.01	# : 0.01	
c : 0.21	g : 0.19	= : 0.17	i : 0.11	d : 0.09	[ : 0.05	! : 0.03	" : 0.03	b : 0.03	h : 0.01	# : 0.01	
c : 0.21	g : 0.17	= : 0.15	i : 0.11	[ : 0.09	! : 0.07	d : 0.03	b : 0.03	$ : 0.03	h : 0.01	" : 0.01	# : 0.01	
c : 0.26	g : 0.15	= : 0.11	! : 0.09	# : 0.09	i : 0.07	b : 0.05	[ : 0.05	$ : 0.03	" : 0.01	d : 0.01	
c : 0.19	= : 0.11	# : 0.11	[ : 0.09	g : 0.09	! : 0.09	i : 0.07	b : 0.07	$ : 0.03	a : 0.03	d : 0.03	e : 0.01	
[ : 0.13	c : 0.13	! : 0.11	# : 0.11	= : 0.09	a : 0.09	b : 0.07	i : 0.07	g : 0.05	$ : 0.03	d : 0.03	e : 0.01	
[ : 0.28	d : 0.17	c : 0.11	! : 0.09	# : 0.09	b : 0.05	= : 0.05	$ : 0.03	i : 0.03	e : 0.01	g : 0.01	
c : 0.57	d : 0.15	[ : 0.05	= : 0.05	b : 0.03	i : 0.03	! : 0.03	e : 0.01	# : 0.01	
c : 0.57	d : 0.13	b : 0.09	o : 0.09	i : 0.03	[ : 0.01	= : 0.01	e : 0.01	
c : 0.51	d : 0.13	o : 0.11	b : 0.07	n : 0.05	a : 0.03	i : 0.03	= : 0.01	
m : 0.63	o : 0.11	n : 0.09	l : 0.09	c : 0.03	= : 0.01	
m : 0.63	l : 0.15	o : 0.11	n : 0.09	
m : 0.63	l : 0.15	o : 0.11	n : 0.09	
m : 0.63	o : 0.11	n : 0.09	l : 0.05	c : 0.05	b : 0.01	d : 0.01	
c : 0.57	d : 0.15	b : 0.09	= : 0.03	n : 0.03	a : 0.03	i : 0.03	o : 0.01	
c : 0.61	d : 0.15	b : 0.09	= : 0.03	] : 0.03	i : 0.03	3 : 0.01	
c : 0.57	d : 0.15	= : 0.07	3 : 0.05	i : 0.05	2 : 0.03	b : 0.01	e : 0.01	
] : 0.30	d : 0.13	2 : 0.13	3 : 0.09	c : 0.09	= : 0.07	i : 0.07	4 : 0.03	> : 0.01	e : 0.01	
c : 0.15	2 : 0.13	= : 0.11	a : 0.11	3 : 0.09	i : 0.09	g : 0.07	b : 0.07	] : 0.03	4 : 0.03	> : 0.01	d : 0.01	e : 0.01	
c : 0.17	b : 0.15	= : 0.11	g : 0.09	i : 0.09	2 : 0.07	] : 0.07	3 : 0.05	d : 0.03	4 : 0.03	a : 0.01	h : 0.01	> : 0.01	e : 0.01	
c : 0.26	g : 0.13	= : 0.11	i : 0.09	] : 0.09	b : 0.07	3 : 0.03	d : 0.03	4 : 0.03	2 : 0.03	h : 0.01	> : 0.01	e : 0.01	
c : 0.24	g : 0.15	= : 0.13	i : 0.11	] : 0.09	d : 0.07	2 : 0.05	3 : 0.03	h : 0.01	> : 0.01	4 : 0.01	b : 0.01	
c : 0.23	g : 0.17	= : 0.17	i : 0.11	2 : 0.09	d : 0.07	3 : 0.03	4 : 0.03	h : 0.01	> : 0.01	b : 0.01	
g : 0.19	= : 0.19	c : 0.11	i : 0.07	d : 0.07	4 : 0.07	3 : 0.05	] : 0.05	2 : 0.05	b : 0.03	h : 0.03	> : 0.01	
g : 0.23	= : 0.17	d : 0.09	i : 0.07	4 : 0.07	c : 0.05	3 : 0.05	b : 0.05	a : 0.03	h : 0.03	2 : 0.03	] : 0.01	e : 0.01	> : 0.01	
= : 0.17	g : 0.15	3 : 0.09	4 : 0.09	d : 0.09	] : 0.07	2 : 0.05	i : 0.05	c : 0.05	h : 0.03	e : 0.03	b : 0.03	> : 0.01	
= : 0.15	g : 0.13	c : 0.13	4 : 0.07	d : 0.07	b : 0.07	2 : 0.05	3 : 0.05	h : 0.05	i : 0.03	] : 0.03	e : 0.03	f : 0.01	> : 0.01	7 : 0.01	
c : 0.19	= : 0.11	g : 0.09	d : 0.09	e : 0.07	b : 0.07	4 : 0.05	3 : 0.05	f : 0.03	2 : 0.03	h : 0.03	] : 0.01	i : 0.01	> : 0.01	: : 0.01	7 : 0.01	F : 0.01	

#score	702.9944925525851
#seq	52
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_UTR_m1_run2.txt

#BEAR
^^^^^^^^^^^^^^^^^^^^^^^^^ccc3	chrX:70794175-70794501(+)$1	326	127	156	32.2348
iiiiiii^^^^^^^^^^^^^^^^^^iiii	chr19:39369331-39369619(-)$1	288	163	192	31.2867
###eeeeeyyyyyyyyyyyyyyyyeeeee	chr12:67706371-67706745(+)$1	374	194	223	22.5843
[eeeee^^^^^^^^^^^^^^^^^^^^eee	chr10:88810184-88810444(-)$1	260	82	111	33.9811
=======yyyyyyyyyyyyyyyy======	chr8:17913880-17914208(-)$1	328	78	107	23.2691
gg^^^^^^^^^^^^^^^^^^^^^^^gggg	chr10:860347-860666(-)$1	319	64	93	32.4182
&eeeee^^^^^^^^^^^^^^^^^^^^^^^	chr6:127610057-127610343(-)$1	286	110	139	34.6373
iiiiii^^^^^^^^^^^^^^^^^^^^^^^	chr5:148884429-148884698(-)$1	269	8	37	35.1139
iiiii^^^^^^^^^^^^^^^^^^^^^iii	chr1:193222622-193222923(+)$1	301	138	167	33.6269
ffffff^^^^^^^^^^^^^^^^^^^ffff	chr4:73941036-73941324(-)$1	288	9	38	32.1004
:eeeee^^^^^^^^^^^^^^^^^^eeeee	chr3:183888833-183889105(+)$1	272	90	119	30.9510
gggggggyyyyyyyyyyyyyyyygggggg	chr11:96075322-96075636(-)$1	314	127	156	22.4132
ffffff^^^^^^^^^^^^^^^^^^^^^^^	chr1:47143916-47144204(-)$1	288	96	125	34.6485
ffffff^^^^^^^^^^^^^^^^^^^^^^^	chr4:140339699-140340014(+)$1	315	223	252	34.6485
ffffff^^^^^^^^^^^^^^^^^^^^^^^	chr12:112443466-112443782(-)$1	316	186	215	34.6485
:::ccc^^^^^^^^^^^^^^^^^^ccccc	chr1:205685177-205685449(-)$1	272	110	139	28.6287
:eeeee^^^^^^^^^^^^^^^^^^^eeee	chr2:152659020-152659287(-)$1	267	15	44	32.2422
=======^^^^^^^^^^^^^^^^^^====	chr18:673907-674219(-)$1	312	255	284	32.0100
ee[ccc^^^^^^^^^^^^^^^^^^^^^^^	chr16:69737618-69737881(+)$1	263	156	185	34.8311
f[dddd^^^^^^^^^^^^^^^^^^^^^^^	chr9:36339364-36339677(-)$1	313	62	91	34.5476
h[dddd^^^^^^^^^^^^^^^^^^dddd]	chr7:64293548-64293841(+)$1	293	165	194	30.6500
ff[ccc^^^^^^^^^^^^^^^^^^^^^^^	chr9:95477225-95477517(-)$1	292	104	133	34.8602
"dddd^^^^^^^^^^^^^^^^^^^^dddd	chr22:26931829-26932071(-)$1	242	24	53	32.2591
[bb[bb^^^^^^^^^^^^^^^^^^^^^bb	chr1:117645299-117645530(+)$1	231	21	50	32.6777
======^^^^^^^^^^^^^^^^^^^^^^^	chr3:183889126-183889402(+)$1	276	166	195	35.2571
[eeeee^^^^^^^^^^^^^^^^^^^^^^e	chr20:57475320-57475575(+)$1	255	27	56	34.9451
ffffff^^^^^^^^^^^^^^^^^^^^^^^	chr4:76447652-76447945(+)$1	293	114	143	34.6485
gggggg^^^^^^^^^^^^^^^^^^^^^^^	chr7:73108681-73108954(+)$1	273	25	54	35.1561
:eeeee^^^^^^^^^^^^^^^^^^^^^ee	chr9:86584797-86585053(-)$1	256	1	30	33.5017
gggggg^^^^^^^^^^^^^^^^^^^^^^^	chr18:214188-214502(+)$1	314	183	212	35.1561
dd[eeeeeyyyyyyyyyyyyyyyyeeeee	chr17:15133359-15133640(-)$1	281	21	50	22.4491
======^^^^^^^^^^^^^^^^^^^^^^^	chr3:183889211-183889470(+)$1	259	81	110	35.2571
ffffff^^^^^^^^^^^^^^^^^^^ffff	chr20:57475219-57475520(+)$1	301	40	69	32.1004
a[dddd^^^^^^^^^^^^^^^^^^^^^^^	chr3:48014435-48014727(-)$1	292	125	154	34.6384
ffffff^^^^^^^^^^^^^^^^^^^^^^^	chr22:39414530-39414880(+)$1	350	138	167	34.6485
:eeeee^^^^^^^^^^^^^^^^^^^^^^e	chr8:67543396-67543706(-)$1	310	99	128	33.9434
:dddd^^^^^^^^^^^^^^^^^^^^dddd	chr5:79946556-79946777(-)$1	221	132	161	31.3399
cc^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr6:28123442-28123718(+)$1	276	90	119	33.1476
[cccccc^^^^^^^^^^^^^^^^^^ccc]	chr6:36454964-36455238(+)$1	274	202	231	31.6796
hhhhhh^^^^^^^^^^^^^^^^^^^^^^^	chr8:42874497-42874785(+)$1	288	183	212	33.6979
hhhhhh^^^^^^^^^^^^^^^^^^^^^^^	chr2:85547883-85548195(-)$1	312	170	199	33.6979
gggggg^^^^^^^^^^^^^^^^^^^gggg	chr6:107100949-107101256(+)$1	307	94	123	32.9002
ddd^^^^^^^^^^^^^^^^^^^^^^dddd	chr10:93622933-93623245(+)$1	312	144	173	31.8471
"dddd^^^^^^^^^^^^^^^^^^^^dddd	chr22:26931871-26932191(-)$1	320	144	173	32.2591
"eeeee^^^^^^^^^^^^^^^^^^eeeee	chr12:122617074-122617380(+)$1	306	160	189	31.8702
:eeeee^^^^^^^^^^^^^^^^^^eeeee	chr3:183888905-183889247(+)$1	342	18	47	30.9510
[eeeee^^^^^^^^^^^^^^^^^^^^eee	chr4:83276104-83276383(-)$1	279	40	69	33.9811
gggggg^^^^^^^^^^^^^^^^^^^^^^^	chr2:182794460-182794783(+)$1	323	115	144	35.1561
gg^^^^^^^^^^^^^^^^^^^^^^^gggg	chr15:66783687-66783961(+)$1	274	131	160	32.4182
gggg^^^^^^^^^^^^^^^^^^^^^^ggg	chr1:241795040-241795307(-)$1	267	233	262	33.5845

#otherMatches

#Seq PSSM
UUUCUUCCCUGACCCCCAUACCCUCACCC	chrX:70794175-70794501(+)$1	326	127	156	32.2348
GGCCCCCACUCUGUCUCCUGCCCCCGGGG	chr19:39369331-39369619(-)$1	288	163	192	31.2867
AAAGAUUCAUCAUCUACUAACUUGGAAUC	chr12:67706371-67706745(+)$1	374	194	223	22.5843
AAGAGUCAGCUUUUUUUUUUUUUUUAACU	chr10:88810184-88810444(-)$1	260	82	111	33.9811
UUUUUCAGAAAUCAAACUGCUUAUGAAAA	chr8:17913880-17914208(-)$1	328	78	107	23.2691
CUCGUUUUUUAAUCACAUCUAAUUUGGUG	chr10:860347-860666(-)$1	319	64	93	32.4182
CUGAAAAACAACUAACCUUCUAACAACUA	chr6:127610057-127610343(-)$1	286	110	139	34.6373
GUUGGGAAUAUAAUAUAAUCAAUCAAUCC	chr5:148884429-148884698(-)$1	269	8	37	35.1139
UUUUAGCAGCACAACAGUAAUCCAUAUAA	chr1:193222622-193222923(+)$1	301	138	167	33.6269
CUUGCUUUCUUUUUGGUUUAUUUGUAGCA	chr4:73941036-73941324(-)$1	288	9	38	32.1004
UUAGCUCCCUUUCACCAUUUAUUCAGCUA	chr3:183888833-183889105(+)$1	272	90	119	30.9510
GGGGGAGUCCUCUCUAUUAAUACCUCUCU	chr11:96075322-96075636(-)$1	314	127	156	22.4132
GGACUGCCUAAUAUCUAUUUACCUAACAA	chr1:47143916-47144204(-)$1	288	96	125	34.6485
gcuuuuaaaaauuacucaacccacuuacc	chr4:140339699-140340014(+)$1	315	223	252	34.6485
CUAGUAUUUGUCUCUUCUGUUACCUAUUC	chr12:112443466-112443782(-)$1	316	186	215	34.6485
UAACAGUCUCUUUAAUAUAUUAAUCUGCA	chr1:205685177-205685449(-)$1	272	110	139	28.6287
AAUAACACAAAUAAUAAUAUCCUUCGUUA	chr2:152659020-152659287(-)$1	267	15	44	32.2422
UUCUGUUUAACACUUGUCAUAAAUUAGCA	chr18:673907-674219(-)$1	312	255	284	32.0100
ACCCUGCUUGCUUACUCAUAUUCUCCCUC	chr16:69737618-69737881(+)$1	263	156	185	34.8311
GUGACUUAAUCAACUAUAAAAGCUUACAA	chr9:36339364-36339677(-)$1	313	62	91	34.5476
UGUGAAAAUGAUUUUAACAAAACCUUCAA	chr7:64293548-64293841(+)$1	293	165	194	30.6500
GCAGCUAACAUCUGCUUCACCUCAACUAA	chr9:95477225-95477517(-)$1	292	104	133	34.8602
ccugucucucauacucuaacaucuaacag	chr22:26931829-26932071(-)$1	242	24	53	32.2591
UGGuacaaucuaauaaauacuaauccagu	chr1:117645299-117645530(+)$1	231	21	50	32.6777
AGGCCUGAAACAUUUCUUUUCUUUCUUUU	chr3:183889126-183889402(+)$1	276	166	195	35.2571
UGCUAAACCCUUGAACCCUACUAAUACCU	chr20:57475320-57475575(+)$1	255	27	56	34.9451
acccauuaaccauccccaccuccccccca	chr4:76447652-76447945(+)$1	293	114	143	34.6485
uggcucucccuuccuuccugcauccucau	chr7:73108681-73108954(+)$1	273	25	54	35.1561
UAGCUUAUACAUACUAAAACCUUUAAAAA	chr9:86584797-86585053(-)$1	256	1	30	33.5017
UAUAAAUACAUCUACUUAACAAAAAAAUA	chr18:214188-214502(+)$1	314	183	212	35.1561
UACAGGUGGAGUAUCUUCGUCACACAUCU	chr17:15133359-15133640(-)$1	281	21	50	22.4491
AGGCCUGAAACAUUUCUUUUCUUUCUUUU	chr3:183889211-183889470(+)$1	259	81	110	35.2571
CUAAUUGACAAUCUGCUGUACCAAAAGUU	chr20:57475219-57475520(+)$1	301	40	69	32.1004
AUUCCACUAAUAAACAUCUUACAUUAACA	chr3:48014435-48014727(-)$1	292	125	154	34.6384
CCCAGCAUAACCAAAUCUUACUAAACUCA	chr22:39414530-39414880(+)$1	350	138	167	34.6485
AUCUGCUACUGAAUAACUCUCUAAAUAUG	chr8:67543396-67543706(-)$1	310	99	128	33.9434
AAGCUAAGACCCCCGAAACCAGACGAGCU	chr5:79946556-79946777(-)$1	221	132	161	31.3399
GAUCAUAAAUUCUUUCCCUAUAACAUUCC	chr6:28123442-28123718(+)$1	276	90	119	33.1476
GCAGCCCUGGUAACUUGAAAAAUUUGGGU	chr6:36454964-36455238(+)$1	274	202	231	31.6796
GCAGAUCUCUUUACGUUUUUUCUCACAUC	chr8:42874497-42874785(+)$1	288	183	212	33.6979
AGGUUACCAGUUAUCCAAUCACCAAAUCC	chr2:85547883-85548195(-)$1	312	170	199	33.6979
AAUGUUAAAUUACUAACCUUUUAAAAAUA	chr6:107100949-107101256(+)$1	307	94	123	32.9002
CAGAACUAAUUUUACUAAUACAAUACUGU	chr10:93622933-93623245(+)$1	312	144	173	31.8471
ccugucucucauacucuaacaucuaacag	chr22:26931871-26932191(-)$1	320	144	173	32.2591
CAUGGAUUACUAAUAAAAAUAACUUCUGU	chr12:122617074-122617380(+)$1	306	160	189	31.8702
UUAGCUCCCUUUCACCAUUUAUUCAGCUA	chr3:183888905-183889247(+)$1	342	18	47	30.9510
CAUAUUAUAACAUAGUGACUUUCAAAGAU	chr4:83276104-83276383(-)$1	279	40	69	33.9811
UGAAGACUUCCAGACUUAUCCAACUUAUA	chr2:182794460-182794783(+)$1	323	115	144	35.1561
UAACAAAUCUAAUCUCUUAUUCUAAUAAA	chr15:66783687-66783961(+)$1	274	131	160	32.4182
UGUGAAGAUAAGAUGAACUAAACAAACAU	chr1:241795040-241795307(-)$1	267	233	262	33.5845

#DB
.........................))).	chrX:70794175-70794501(+)$1	1	127	156	32.2348
(((((((..................))))	chr19:39369331-39369619(-)$1	1	163	192	31.2867
...(((((................)))))	chr12:67706371-67706745(+)$1	1	194	223	22.5843
.(((((....................)))	chr10:88810184-88810444(-)$1	1	82	111	33.9811
(((((((................))))))	chr8:17913880-17914208(-)$1	1	78	107	23.2691
((.......................))))	chr10:860347-860666(-)$1	1	64	93	32.4182
.(((((.......................	chr6:127610057-127610343(-)$1	1	110	139	34.6373
((((((.......................	chr5:148884429-148884698(-)$1	1	8	37	35.1139
(((((.....................)))	chr1:193222622-193222923(+)$1	1	138	167	33.6269
((((((...................))))	chr4:73941036-73941324(-)$1	1	9	38	32.1004
.(((((..................)))))	chr3:183888833-183889105(+)$1	1	90	119	30.9510
(((((((................))))))	chr11:96075322-96075636(-)$1	1	127	156	22.4132
((((((.......................	chr1:47143916-47144204(-)$1	1	96	125	34.6485
((((((.......................	chr4:140339699-140340014(+)$1	1	223	252	34.6485
((((((.......................	chr12:112443466-112443782(-)$1	1	186	215	34.6485
...(((..................)))((	chr1:205685177-205685449(-)$1	1	110	139	28.6287
.(((((...................))))	chr2:152659020-152659287(-)$1	1	15	44	32.2422
(((((((..................))))	chr18:673907-674219(-)$1	1	255	284	32.0100
((.(((.......................	chr16:69737618-69737881(+)$1	1	156	185	34.8311
(.((((.......................	chr9:36339364-36339677(-)$1	1	62	91	34.5476
(.((((..................)))).	chr7:64293548-64293841(+)$1	1	165	194	30.6500
((.(((.......................	chr9:95477225-95477517(-)$1	1	104	133	34.8602
.((((....................))))	chr22:26931829-26932071(-)$1	1	24	53	32.2591
.((.((.....................))	chr1:117645299-117645530(+)$1	1	21	50	32.6777
((((((.......................	chr3:183889126-183889402(+)$1	1	166	195	35.2571
.(((((......................)	chr20:57475320-57475575(+)$1	1	27	56	34.9451
((((((.......................	chr4:76447652-76447945(+)$1	1	114	143	34.6485
((((((.......................	chr7:73108681-73108954(+)$1	1	25	54	35.1561
.(((((.....................))	chr9:86584797-86585053(-)$1	1	1	30	33.5017
((((((.......................	chr18:214188-214502(+)$1	1	183	212	35.1561
((.(((((................)))))	chr17:15133359-15133640(-)$1	1	21	50	22.4491
((((((.......................	chr3:183889211-183889470(+)$1	1	81	110	35.2571
((((((...................))))	chr20:57475219-57475520(+)$1	1	40	69	32.1004
(.((((.......................	chr3:48014435-48014727(-)$1	1	125	154	34.6384
((((((.......................	chr22:39414530-39414880(+)$1	1	138	167	34.6485
.(((((......................)	chr8:67543396-67543706(-)$1	1	99	128	33.9434
.((((....................))))	chr5:79946556-79946777(-)$1	1	132	161	31.3399
((........................)))	chr6:28123442-28123718(+)$1	1	90	119	33.1476
.((((((..................))).	chr6:36454964-36455238(+)$1	1	202	231	31.6796
((((((.......................	chr8:42874497-42874785(+)$1	1	183	212	33.6979
((((((.......................	chr2:85547883-85548195(-)$1	1	170	199	33.6979
((((((...................))))	chr6:107100949-107101256(+)$1	1	94	123	32.9002
(((......................))))	chr10:93622933-93623245(+)$1	1	144	173	31.8471
.((((....................))))	chr22:26931871-26932191(-)$1	1	144	173	32.2591
.(((((..................)))))	chr12:122617074-122617380(+)$1	1	160	189	31.8702
.(((((..................)))))	chr3:183888905-183889247(+)$1	1	18	47	30.9510
.(((((....................)))	chr4:83276104-83276383(-)$1	1	40	69	33.9811
((((((.......................	chr2:182794460-182794783(+)$1	1	115	144	35.1561
((.......................))))	chr15:66783687-66783961(+)$1	1	131	160	32.4182
((((......................)))	chr1:241795040-241795307(-)$1	1	233	262	33.5845

#PSSM
f : 0.18	g : 0.16	: : 0.14	[ : 0.10	= : 0.08	i : 0.06	h : 0.06	" : 0.06	d : 0.04	^ : 0.02	# : 0.02	& : 0.02	e : 0.02	a : 0.02	c : 0.02	
e : 0.21	g : 0.16	f : 0.16	d : 0.10	= : 0.08	i : 0.06	[ : 0.06	c : 0.04	h : 0.04	^ : 0.02	# : 0.02	: : 0.02	b : 0.02	
e : 0.19	f : 0.14	d : 0.14	g : 0.12	^ : 0.08	= : 0.08	i : 0.06	[ : 0.06	h : 0.04	# : 0.02	: : 0.02	b : 0.02	c : 0.02	
e : 0.23	f : 0.14	g : 0.12	d : 0.12	^ : 0.10	= : 0.08	c : 0.08	i : 0.06	h : 0.04	[ : 0.02	
e : 0.23	f : 0.14	^ : 0.12	d : 0.12	g : 0.10	= : 0.08	c : 0.08	i : 0.06	h : 0.04	b : 0.02	
e : 0.23	^ : 0.19	f : 0.14	g : 0.10	= : 0.08	c : 0.08	d : 0.06	i : 0.04	h : 0.04	b : 0.02	
^ : 0.86	e : 0.04	= : 0.04	i : 0.02	g : 0.02	c : 0.02	
^ : 0.92	e : 0.04	y : 0.04	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.08	
^ : 0.92	y : 0.04	= : 0.02	g : 0.02	
^ : 0.82	e : 0.10	= : 0.02	g : 0.02	c : 0.02	d : 0.02	
^ : 0.54	e : 0.12	d : 0.10	g : 0.08	c : 0.06	= : 0.04	f : 0.04	i : 0.02	
^ : 0.44	e : 0.16	g : 0.10	d : 0.10	c : 0.08	i : 0.04	= : 0.04	f : 0.04	
^ : 0.40	e : 0.18	g : 0.10	d : 0.10	c : 0.08	i : 0.04	= : 0.04	f : 0.04	b : 0.02	
^ : 0.36	e : 0.21	g : 0.10	d : 0.08	i : 0.04	= : 0.04	f : 0.04	c : 0.04	] : 0.04	3 : 0.02	b : 0.02	

#score	1621.50365723757
#seq	50
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_UTR_m1_run1.txt

#BEAR
[bb[a!!dddd[bbnnnnnbb]dddd4444a]bb	chr3:15901024-15901321(-)$1	297	215	249	9.1029
ffffff[bb!!cccnnnnnccc22bb]ffffff]	chr17:62498269-62498494(-)$1	225	119	153	12.0691
==========xxxxxxxxxxxxxxx=========	chr3:49052722-49052989(+)$1	267	40	74	9.7615
d!!eeeee####bbmmmmbb4444eeeee22ddd	chrX:128581116-128581365(-)$1	249	81	115	10.0626
ffff[dddd!!cccmmmmcccdddd333ffffff	chr14:24114171-24114417(+)$1	246	164	198	10.9820
fffff[ccc[ddddmmmmdddd333cccffffff	chr20:62589038-62589274(-)$1	236	40	74	11.8344
gggg[a!!bb[aooooooa]bb22a]ggggggg:	chr2:216177027-216177307(+)$1	280	6	40	10.6482
fff!!ccc"""bbccclllccc]bb333ccc22f	chr11:61109873-61110111(+)$1	238	151	185	10.9453
=====[a$$$$$cccmmmmccc333a========	chr19:2228265-2228507(+)$1	242	17	51	13.3180
[ffffffa[cccbbmmmmbb]ccc]a]ffffff]	chr17:7477038-7477283(+)$1	245	163	197	9.8079
:=============nnnnn=============GG	chr20:36151576-36151858(-)$1	282	11	45	10.4031
bbdddd!!bb[cccnnnnncccbb22dddd:ccc	chr17:7123741-7124002(+)$1	261	95	129	9.3248
e[eeeee####ddddmmmmdddd22eeeeeeeee	chr11:85374568-85374811(-)$1	243	206	240	10.5008
[cccdddd"""ddddmmmmdddd4444dddd]cc	chr16:3729708-3729964(-)$1	256	158	192	10.8463
%%%dddd[bb[cccnnnnnccc]bbdddd4444e	chr9:19378848-19379096(-)$1	248	134	168	8.5516
!!ccc####eeeeennnnneeeeecccggggggg	chr1:2327059-2327308(+)$1	249	162	196	9.8853
a[ggggggg####bbmmmmbb333ggggggg]a:	chr14:24911581-24911869(-)$1	288	133	167	11.0334
ffbb[gggggggbboooooobb22ggggggg]bb	chr17:80193554-80193808(+)$1	254	186	220	10.1721
fffff[ccc"""bbnnnnnbb333ccc]ffffff	chr14:21967359-21967672(-)$1	313	157	191	13.2220
eeee!!bb!!cccooooooccc]bb22eeeee33	chr16:89724493-89724758(+)$1	265	167	201	10.6972
[a"""bb[a[ddddnnnnndddd]a]bb22ahhh	chr11:61634375-61634656(+)$1	281	22	56	9.5493
gggg[ccc"""cccmmmmccc]cccgggggggDD	chr3:184100631-184100872(+)$1	241	5	39	10.3422
f[eeeee"""ddddnnnnndddd333eeeee]ff	chr5:52386506-52386748(+)$1	242	36	70	12.1334
dddd"""ccc[bbmmmmbbccc333ddddggggg	chr14:54421087-54421366(-)$1	279	170	204	9.9223
!ccc[bb$$$$$ammmma4444bb]ccc22ccc:	chr11:62566196-62566452(-)$1	256	7	41	8.9713
cffffff!!ddddoooooodddd22ffffff]cc	chr17:56082934-56083222(-)$1	288	73	107	10.7941
e[ccc!!cccrrrrrrrrrccc22ccc333eeee	chr17:42398546-42398801(-)$1	255	64	98	9.8208
fff!!a[ccc"""bbmmmmbb333cccaffffff	chr1:70687115-70687376(+)$1	261	165	199	11.8469
iiiiiii!!bb[cccmmmmccc]bb]iiiiiiii	chr17:7477340-7477585(+)$1	245	171	205	10.9461
bb[dddd[a[ddddnnnnndddd]a]ddddbb]e	chr16:89805659-89805922(-)$1	263	126	160	9.6292
CCbb!!ccc!!cccmmmmccc333ccc]bbccc[	chr17:73127285-73127556(-)$1	271	135	169	9.6168
fff!!ddddbb[aooooooa]bb22dddd]ffff	chr1:226053589-226053854(-)$1	265	209	243	10.2347
bb[===========mmmm===========]bbA}	chr6:31937133-31937369(+)$1	236	173	207	9.3361
ccffffff!!bbbbmmmmbb]bb22ffffff]cc	chr16:28847426-28847662(+)$1	236	161	195	9.7072
ee[ccc[bb"""cccmmmmccc]bbccc]eeeee	chr15:90349954-90350224(-)$1	270	58	92	11.1980
ea[dddd[a[ddddllldddd]a22dddd]a]ee	chr11:66394086-66394330(+)$1	244	20	54	9.8525
eeeeecccbb[cccmmmmccc]bb]ccc]eeeee	chr6:31638709-31638988(+)$1	279	25	59	10.2034
edddd!!ccccccooooooccc333ccc22dddd	chr17:7477430-7477656(+)$1	226	192	226	11.7309
ffff[ccc"""cccnnnnnccc333ccc22ffff	chr3:48670988-48671252(-)$1	264	80	114	14.6822

#otherMatches

#Seq PSSM
gcggcggcggcggcggcgggcggccggggaggcg	chr3:15901024-15901321(-)$1	297	215	249	9.1029
UGAGUUUAAUAACACAACUUGUCUUUUAACUUAG	chr17:62498269-62498494(-)$1	225	119	153	12.0691
CACAGACAGCAUGGAGCAGGGAUGGGCUGUCUGU	chr3:49052722-49052989(+)$1	267	40	74	9.7615
UCCUAGAUUUAACAUUGUUGGGCCAUUUAAAAUG	chrX:128581116-128581365(-)$1	249	81	115	10.0626
CCUUCUUCCAUCCAGGAUUGGGGAGUCAGAGGAC	chr14:24114171-24114417(+)$1	246	164	198	10.9820
UGGGGUCUGGCAGCUGCUGCUGGGGCAGCCUCAU	chr20:62589038-62589274(-)$1	236	40	74	11.8344
UGCGUGGGGCCCGCCUUAGAGCAGCUCGCGGGUG	chr2:216177027-216177307(+)$1	280	6	40	10.6482
AUUCCUGGCUCCCUCUGACAGAUGGCAACCGCCG	chr11:61109873-61110111(+)$1	238	151	185	10.9453
GUGGGUGUCCCUCGGCAUGCCGCCUCCCUAUGCC	chr19:2228265-2228507(+)$1	242	17	51	13.3180
GACUUCCAGCGCGCUGGUGCUGCGGUGGGAGGUG	chr17:7477038-7477283(+)$1	245	163	197	9.8079
UUAGUAAAGGUGGGAUUCAUUUACUUUUACUGCU	chr20:36151576-36151858(-)$1	282	11	45	10.4031
CCGGCCAAGGCGGUAGGUAGCCCCGAGGCCAGGU	chr17:7123741-7124002(+)$1	261	95	129	9.3248
UAGGGGUUACAGAACAGUCGUUCCCGCCUCACAA	chr11:85374568-85374811(-)$1	243	206	240	10.5008
CGUCUCUCUCCUCAGGAUACUGGUAUCGGGAUGA	chr16:3729708-3729964(-)$1	256	158	192	10.8463
UUGGAAUAGAAAUAGUAAAUGUGUCAUUCAUUGU	chr9:19378848-19379096(-)$1	248	134	168	8.5516
GUUACAGAAUGUCUGAAGGGGACAGUGUGGGAGA	chr1:2327059-2327308(+)$1	249	162	196	9.8853
GAGGGUGCCACAGCGGGGACGGAAGGCGCCCCCA	chr14:24911581-24911869(-)$1	288	133	167	11.0334
UGCCGGGCAGCUGCCCCUCAGCUGAGCUGCCGGG	chr17:80193554-80193808(+)$1	254	186	220	10.1721
GUUGGUGUCAAAGGAAAUCCCCAAGGCUUCAACC	chr14:21967359-21967672(-)$1	313	157	191	13.2220
GAGCAAAAGAAGGGAUCCACCUAUUCAGUUCCAA	chr16:89724493-89724758(+)$1	265	167	201	10.6972
AGGGGCUGGGGAGGGGGUACCUCAUGAGGACCAG	chr11:61634375-61634656(+)$1	281	22	56	9.5493
CUUGCAGGACUAACCCAGGUUCCCUUGAGGCUCC	chr3:184100631-184100872(+)$1	241	5	39	10.3422
UAACCUGGUAUUUUAAGAGAAAACUGCAGGUCAG	chr5:52386506-52386748(+)$1	242	36	70	12.1334
GCAGAGGUCGAGCGCAGGCCGAAAGCUGUUCACC	chr14:54421087-54421366(-)$1	279	170	204	9.9223
GACCUGGCAGAACUGAUGGAUACCUGGUGAGGCA	chr11:62566196-62566452(-)$1	256	7	41	8.9713
CGUAUUCUUUUCUUUGACCAGAAUUGGAUACAGU	chr17:56082934-56083222(-)$1	288	73	107	10.7941
CAGCUCCCAGCCCCAACCUCUGCCAGCCUAGGGA	chr17:42398546-42398801(-)$1	255	64	98	9.8208
UUGAUGUGUUAAAGCAGGAGCGAGAACCCGAGCA	chr1:70687115-70687376(+)$1	261	165	199	11.8469
CCGGCUGUCAGGAUUUCUGAGUGCUUCGGUCGGG	chr17:7477340-7477585(+)$1	245	171	205	10.9461
UGUCUGUGCCUCUGCUCCACAGAUGAGCAGUAUC	chr16:89805659-89805922(-)$1	263	126	160	9.6292
CCUCGCGGGAACGGGAAGCCGGGACCCAGAACUC	chr17:73127285-73127556(-)$1	271	135	169	9.6168
CAGGACUCCCCAGAGAUGCCAGGAAGGAGACUGU	chr1:226053589-226053854(-)$1	265	209	243	10.2347
GCAGGGCUCUCAGGGACCCCUGAGGGCCUGGUGG	chr6:31937133-31937369(+)$1	236	173	207	9.3361
GGGUCUUGGAGGCAGGGCUGUCCCACAGGGCGCC	chr16:28847426-28847662(+)$1	236	161	195	9.7072
GAUCAAUGCAAUGCCACCUGGCCGCUUGCUUUGC	chr15:90349954-90350224(-)$1	270	58	92	11.1980
CAGAUGCACUCUGGCUACCAGCGCCGCAUGUAGG	chr11:66394086-66394330(+)$1	244	20	54	9.8525
UCCAUAUGCUUGUAGGUGUGCUGGUCAUGGUGGG	chr6:31638709-31638988(+)$1	279	25	59	10.2034
CGAGGUGAGACUGGAGAAAUGGAAUUCUGUCCUC	chr17:7477430-7477656(+)$1	226	192	226	11.7309
GGCCUGGAAAAAUCAGGUAGGUAACUCUCUGGUC	chr3:48670988-48671252(-)$1	264	80	114	14.6822

#DB
.((.(..((((.((.....)).))))....).))	chr3:15901024-15901321(-)$1	1	215	249	9.1029
((((((.((..(((.....)))..)).)))))).	chr17:62498269-62498494(-)$1	1	119	153	12.0691
((((((((((...............)))))))))	chr3:49052722-49052989(+)$1	1	40	74	9.7615
(..(((((....((....))....)))))..)))	chrX:128581116-128581365(-)$1	1	81	115	10.0626
((((.((((..(((....)))))))...))))))	chr14:24114171-24114417(+)$1	1	164	198	10.9820
(((((.(((.((((....))))...)))))))))	chr20:62589038-62589274(-)$1	1	40	74	11.8344
((((.(..((.(......).))..).))))))).	chr2:216177027-216177307(+)$1	1	6	40	10.6482
(((..(((...(((((...))).))...)))..)	chr11:61109873-61110111(+)$1	1	151	185	10.9453
(((((.(.....(((....)))...)))))))))	chr19:2228265-2228507(+)$1	1	17	51	13.3180
.(((((((.(((((....)).))).).)))))).	chr17:7477038-7477283(+)$1	1	163	197	9.8079
.(((((((((((((.....)))))))))))))((	chr20:36151576-36151858(-)$1	1	11	45	10.4031
))((((..((.(((.....)))))..)))).(((	chr17:7123741-7124002(+)$1	1	95	129	9.3248
(.(((((....((((....))))..)))))))))	chr11:85374568-85374811(-)$1	1	206	240	10.5008
.(((((((...((((....))))....)))).))	chr16:3729708-3729964(-)$1	1	158	192	10.8463
...((((.((.(((.....))).))))))....)	chr9:19378848-19379096(-)$1	1	134	168	8.5516
..(((....(((((.....)))))))))))))))	chr1:2327059-2327308(+)$1	1	162	196	9.8853
(.(((((((....((....))...))))))).).	chr14:24911581-24911869(-)$1	1	133	167	11.0334
((((.(((((((((......))..))))))).))	chr17:80193554-80193808(+)$1	1	186	220	10.1721
(((((.(((...((.....))...))).))))))	chr14:21967359-21967672(-)$1	1	157	191	13.2220
((((..((..(((......))).))..)))))..	chr16:89724493-89724758(+)$1	1	167	201	10.6972
.(...((.(.((((.....)))).).))..))))	chr11:61634375-61634656(+)$1	1	22	56	9.5493
((((.(((...(((....))).))))))))))((	chr3:184100631-184100872(+)$1	1	5	39	10.3422
(.(((((...((((.....))))...))))).))	chr5:52386506-52386748(+)$1	1	36	70	12.1334
((((...(((.((....)))))...))))(((((	chr14:54421087-54421366(-)$1	1	170	204	9.9223
.(((.((.....(....)....)).)))..))).	chr11:62566196-62566452(-)$1	1	7	41	8.9713
(((((((..((((......))))..)))))).))	chr17:56082934-56083222(-)$1	1	73	107	10.7941
(.(((..(((.........)))..)))...))))	chr17:42398546-42398801(-)$1	1	64	98	9.8208
(((..(.(((...((....))...))))))))))	chr1:70687115-70687376(+)$1	1	165	199	11.8469
(((((((..((.(((....))).)).))))))))	chr17:7477340-7477585(+)$1	1	171	205	10.9461
((.((((.(.((((.....)))).).)))))).)	chr16:89805659-89805922(-)$1	1	126	160	9.6292
))((..(((..(((....)))...))).))(((.	chr17:73127285-73127556(-)$1	1	135	169	9.6168
(((..((((((.(......).))..)))).))))	chr1:226053589-226053854(-)$1	1	209	243	10.2347
((.(((((((((((....))))))))))).))).	chr6:31937133-31937369(+)$1	1	173	207	9.3361
((((((((..((((....)).))..)))))).))	chr16:28847426-28847662(+)$1	1	161	195	9.7072
((.(((.((...(((....))).))))).)))))	chr15:90349954-90350224(-)$1	1	58	92	11.1980
((.((((.(.((((...)))).)..)))).).))	chr11:66394086-66394330(+)$1	1	20	54	9.8525
((((((((((.(((....))).)).))).)))))	chr6:31638709-31638988(+)$1	1	25	59	10.2034
)((((..((((((......)))...)))..))))	chr17:7477430-7477656(+)$1	1	192	226	11.7309
((((.(((...(((.....)))...)))..))))	chr3:48670988-48671252(-)$1	1	80	114	14.6822

#PSSM
f : 0.25	e : 0.17	[ : 0.10	b : 0.07	= : 0.05	d : 0.05	g : 0.05	! : 0.05	c : 0.05	: : 0.02	% : 0.02	a : 0.02	i : 0.02	C : 0.02	
f : 0.28	b : 0.10	[ : 0.10	= : 0.07	c : 0.07	e : 0.07	! : 0.05	g : 0.05	a : 0.05	d : 0.05	% : 0.02	i : 0.02	C : 0.02	
f : 0.28	e : 0.10	c : 0.10	[ : 0.10	b : 0.07	= : 0.07	g : 0.07	d : 0.07	! : 0.02	% : 0.02	" : 0.02	i : 0.02	
f : 0.20	d : 0.15	e : 0.12	c : 0.12	= : 0.10	g : 0.07	! : 0.07	b : 0.05	[ : 0.02	" : 0.02	i : 0.02	
f : 0.15	[ : 0.15	d : 0.15	! : 0.12	= : 0.10	e : 0.10	c : 0.07	" : 0.05	a : 0.02	g : 0.02	i : 0.02	
d : 0.17	! : 0.12	c : 0.12	f : 0.10	= : 0.07	e : 0.07	[ : 0.07	a : 0.05	g : 0.05	b : 0.05	# : 0.02	" : 0.02	i : 0.02	
c : 0.17	d : 0.15	! : 0.12	[ : 0.07	= : 0.07	e : 0.07	f : 0.07	b : 0.07	g : 0.05	a : 0.02	# : 0.02	" : 0.02	i : 0.02	
c : 0.28	d : 0.10	! : 0.10	[ : 0.10	b : 0.07	= : 0.07	$ : 0.05	# : 0.05	g : 0.05	e : 0.02	a : 0.02	" : 0.02	f : 0.02	
c : 0.17	b : 0.15	" : 0.12	! : 0.10	d : 0.07	= : 0.07	# : 0.07	a : 0.07	$ : 0.05	g : 0.05	[ : 0.02	
" : 0.17	b : 0.15	! : 0.12	c : 0.12	[ : 0.10	= : 0.07	# : 0.07	d : 0.05	$ : 0.05	e : 0.02	g : 0.02	
d : 0.17	" : 0.17	[ : 0.12	! : 0.07	# : 0.07	c : 0.07	b : 0.07	$ : 0.05	= : 0.05	x : 0.02	e : 0.02	g : 0.02	r : 0.02	
c : 0.28	d : 0.20	[ : 0.07	b : 0.07	" : 0.07	# : 0.05	$ : 0.05	= : 0.05	x : 0.02	a : 0.02	e : 0.02	g : 0.02	r : 0.02	
c : 0.33	b : 0.20	d : 0.20	= : 0.05	a : 0.05	x : 0.02	o : 0.02	e : 0.02	# : 0.02	r : 0.02	" : 0.02	
c : 0.30	b : 0.20	d : 0.17	o : 0.12	= : 0.05	m : 0.05	x : 0.02	e : 0.02	r : 0.02	
n : 0.28	m : 0.28	o : 0.15	c : 0.10	d : 0.05	b : 0.05	x : 0.02	r : 0.02	l : 0.02	
m : 0.46	n : 0.28	o : 0.15	x : 0.02	c : 0.02	r : 0.02	l : 0.02	
m : 0.46	n : 0.28	o : 0.15	l : 0.05	x : 0.02	r : 0.02	
m : 0.41	n : 0.28	o : 0.15	x : 0.02	l : 0.02	b : 0.02	a : 0.02	r : 0.02	d : 0.02	
n : 0.28	m : 0.17	o : 0.12	b : 0.10	c : 0.10	d : 0.05	x : 0.02	a : 0.02	l : 0.02	4 : 0.02	r : 0.02	= : 0.02	
c : 0.41	d : 0.20	b : 0.17	= : 0.05	x : 0.02	] : 0.02	e : 0.02	o : 0.02	4 : 0.02	a : 0.02	
c : 0.41	d : 0.20	b : 0.15	] : 0.07	4 : 0.05	= : 0.05	x : 0.02	e : 0.02	
c : 0.33	d : 0.20	] : 0.10	b : 0.10	3 : 0.10	4 : 0.05	= : 0.05	x : 0.02	e : 0.02	
3 : 0.23	d : 0.20	] : 0.12	b : 0.12	2 : 0.10	c : 0.05	= : 0.05	x : 0.02	4 : 0.02	e : 0.02	a : 0.02	
3 : 0.25	2 : 0.23	b : 0.20	d : 0.05	4 : 0.05	c : 0.05	= : 0.05	] : 0.05	x : 0.02	e : 0.02	
b : 0.15	3 : 0.15	2 : 0.15	c : 0.15	a : 0.07	] : 0.07	d : 0.05	= : 0.05	g : 0.05	x : 0.02	e : 0.02	4 : 0.02	
c : 0.28	d : 0.12	] : 0.10	= : 0.07	3 : 0.07	g : 0.07	e : 0.05	a : 0.05	2 : 0.05	f : 0.05	b : 0.02	4 : 0.02	
c : 0.28	d : 0.15	= : 0.10	g : 0.10	e : 0.07	4 : 0.05	] : 0.05	3 : 0.05	f : 0.05	2 : 0.02	b : 0.02	i : 0.02	
d : 0.17	c : 0.15	g : 0.12	f : 0.10	= : 0.10	e : 0.10	3 : 0.07	] : 0.05	4 : 0.02	b : 0.02	a : 0.02	i : 0.02	
f : 0.20	d : 0.17	g : 0.12	= : 0.10	e : 0.10	2 : 0.10	] : 0.05	4 : 0.02	c : 0.02	3 : 0.02	i : 0.02	b : 0.02	
f : 0.20	g : 0.15	2 : 0.12	e : 0.12	= : 0.07	d : 0.07	] : 0.07	4 : 0.05	c : 0.02	3 : 0.02	i : 0.02	b : 0.02	
f : 0.25	g : 0.15	e : 0.15	a : 0.07	= : 0.07	c : 0.07	d : 0.05	b : 0.05	2 : 0.02	: : 0.02	4 : 0.02	i : 0.02	
] : 0.20	f : 0.20	e : 0.12	g : 0.10	= : 0.07	c : 0.07	d : 0.05	b : 0.05	2 : 0.02	4 : 0.02	h : 0.02	i : 0.02	
f : 0.23	c : 0.15	e : 0.12	g : 0.07	b : 0.05	= : 0.05	d : 0.05	2 : 0.02	G : 0.02	4 : 0.02	a : 0.02	3 : 0.02	h : 0.02	D : 0.02	i : 0.02	] : 0.02	A : 0.02	
f : 0.20	e : 0.17	c : 0.10	: : 0.07	b : 0.05	] : 0.05	= : 0.05	d : 0.05	g : 0.05	G : 0.02	3 : 0.02	h : 0.02	D : 0.02	i : 0.02	[ : 0.02	} : 0.02	

#score	413.68786153696425
#seq	39
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_transcript_m1_run1.txt

#BEAR
cccc!!dddd!!ddddqqqqqqqqdddd22ddddccc]c	chr19:10226830-10227081(-)$1	251	196	235	18.3913
EEEgggggggffffffqqqqqqqqffffff333gggggg	chr9:101598855-101599148(+)$1	293	217	256	15.9435
ggggggg[a!!eeeeeqqqqqqqqeeeee22a]gggggg	chr12:53869269-53869504(+)$1	235	56	95	18.7644
cccccc####ffffffqqqqqqqqffffff4444ccc]c	chr3:48586883-48587157(-)$1	274	48	87	18.8148
ddddffffffccccccqqqqqqqqccc22ccc]ffffff	chr14:105814565-105814797(+)$1	232	34	73	18.3652
ccc!!hhhhhhhh[bbqqqqqqqqbbhhhhhhhh22ccc	chr11:432146-432382(-)$1	236	64	103	15.9328
cc!!cccdddd!!cccqqqqqqqqccc22dddd]ccc22	chr11:291342-291596(+)$1	254	94	133	19.7811
e[bbeeeee[ffffffqqqqqqqqffffffeeeee]bb]	chrX:135594252-135594580(+)$1	328	204	243	16.2085
ffffff!!ccc!!cccqqqqqqqqccc22ccc22fffff	chr11:858336-858642(-)$1	306	133	172	19.7995
#a[ffffff"""ddddqqqqqqqqdddd]ffffff]a33	chr17:27443447-27443736(-)$1	289	47	86	19.3664
c!!ffffff[a[ddddqqqqqqqqdddd]a]ffffff22	chr19:50305775-50306096(+)$1	321	213	252	18.6839
ffffff!!ccc!!cccqqqqqqqqcccccc333ffffff	chr7:100173805-100174111(-)$1	306	95	134	20.6776
g===========ddddqqqqqqqqdddd]==========	chr8:28657656-28657972(-)$1	316	263	302	20.5535
g==========!!cccssssssssssccc]=========	chr9:139339415-139339699(-)$1	284	81	120	15.6042
bb####ccc[ddddbbqqqqqqqqbb]ddddccc333bb	chr4:718790-719023(+)$1	233	170	209	17.9967
eeeee[gggggggcccrrrrrrrrrccc]gggggggeee	chr5:65364486-65364741(+)$1	255	20	59	13.4487
fffff!!dddd"""bbqqqqqqqqbb]dddd]ffffff]	chr15:66975940-66976224(+)$1	284	11	50	18.4433
[a[eeeee$$$$$cccqqqqqqqqccc333eeeee]a]a	chr20:35486281-35486528(-)$1	247	157	196	19.6992
=====$$$$$ffffffqqqqqqqqffffff=========	chr19:2343389-2343639(+)$1	250	201	240	18.7298
####bb[ccc[ccc[aqqqqqqqqa]ccc]ccc]bb444	chr2:74441005-74441286(+)$1	281	174	213	19.5781
ccc!!eeeee[ccc[aqqqqqqqqa]ccc]eeeee22cc	chr19:2188246-2188511(+)$1	265	30	69	19.1646
ff[dddd!!eeeee[aqqqqqqqqa]eeeee]ddddfff	chr19:2338463-2338716(+)$1	253	23	62	17.4651
bb[iiiiiiiii[a[aqqqqqqqqa]a]iiiiiiiiibb	chr17:80805924-80806159(+)$1	235	28	67	19.9702
[a[ggggggg!!ddddqqqqqqqqdddd333ggggggg]	chr10:72511450-72511724(+)$1	274	208	247	20.5381
iccc!!ccc[ddddbbqqqqqqqqbb]dddd333ccccc	chr12:132402684-132403012(+)$1	328	214	253	19.2383
##ccc"""eeeee[bbqqqqqqqqbbeeeee22ccc666	chr21:47957944-47958277(+)$1	333	279	318	17.4493
d[ffffff[bb!!cccqqqqqqqqccc]bb]ffffff]d	chr19:2339321-2339647(+)$1	326	146	185	18.9006
ffffff$$$$$ccc[aqqqqqqqqa]ccc22ffffffcc	chr22:49921577-49921821(-)$1	244	135	174	18.6716
:::cccccc####cccqqqqqqqqccc]ccc]cccdddd	chr2:236529041-236529328(+)$1	287	64	103	17.1350
========####ccccccooooooccc]ccc]=======	chr9:139281603-139281943(-)$1	340	261	300	13.3259
==[a####gggggggaqqqqqqqqa]ggggggg666666	chr4:1347388-1347697(+)$1	309	51	90	18.1251
ff!!bb!!dddd[cccqqqqqqqqcccdddd22bb22ff	chr22:50035042-50035304(-)$1	262	202	241	18.4616
g"""iiiiiiiiicccqqqqqqqqccc]iiiiiiiiigg	chr20:42344246-42344539(+)$1	293	243	282	21.2668
bb[ffffff!!a[cccqqqqqqqqccc]a22ffffff]b	chr7:100229804-100230127(-)$1	323	145	184	19.8667
cc!!ffffff[bb[bbqqqqqqqqbbbb]ffffff22cc	chr9:131832644-131832927(+)$1	283	98	137	17.4519
ddd[cccggggggg[aqqqqqqqqaggggggg666666c	chr16:85668761-85669045(+)$1	284	224	263	17.0042
""ffffff[bb!!cccqqqqqqqqccc22bb]ffffff3	chr22:49921030-49921273(-)$1	243	157	196	19.1600
==dddd[dddd[ddddqqqqqqqqdddd4444ddddddd	chr19:54970382-54970614(+)$1	232	149	188	16.8777
hhhhh[==========qqqqqqqq==========]hhhh	chr1:228331685-228331959(+)$1	274	82	121	18.7190
=====dddd####cccqqqqqqqqccc4444dddd333=	chr2:160594997-160595259(+)$1	262	71	110	20.5136
hhhhhhdddd!!a[bbqqqqqqqqbb]a]dddd]hhhhh	chr17:79827155-79827456(-)$1	301	70	109	16.3863
hhhhccc[dddd[cccqqqqqqqqccc]dddd22ccc55	chr3:128213805-128214068(+)$1	263	188	227	17.4812
ggggggg$$$$$ddddqqqqqqqqdddd4444ggggggg	chr9:4999756-5000072(+)$1	316	66	105	19.1054
d!!a[a[ccc[a[cccssssssssssccc]a]ccc]a]a	chr7:99002158-99002388(-)$1	230	39	78	14.6063
gbb!!============rrrrrrrrr============]	chr17:75211059-75211363(+)$1	304	88	127	13.6864
ccc[a$$$$$ccc[bbqqqqqqqqbb]ccca]ccc]eee	chr16:85678017-85678228(+)$1	211	23	62	18.4776
iiiffffff####cccqqqqqqqqcccffffffddddnn	chr5:882440-882763(-)$1	323	207	246	17.8637
==$$$$$ggggggg[aqqqqqqqqa]ggggggg======	chr20:60899731-60899989(-)$1	258	32	71	19.9625
gggeeeeedddd[cccqqqqqqqqccc]dddd]eeeee:	chr19:3096024-3096282(+)$1	258	137	176	17.5030
==$$$$$ggggggg[aqqqqqqqqa]ggggggg======	chr20:60899789-60900034(-)$1	245	77	116	19.9625
======!!eeeeecccqqqqqqqqccc]eeeee888888	chr16:85681532-85681786(+)$1	254	27	66	17.7953
[bb[ccc[eeeee[bbqqqqqqqqbbeeeee333ccc]b	chr2:132269485-132269764(+)$1	279	214	253	18.6695
"ccc[ccc!!dddd[aqqqqqqqqa]dddd333ccc333	chr7:2215279-2215570(-)$1	291	35	74	20.4764
gg::ggggggg!!cccqqqqqqqqcccgggggggggggg	chr1:41288039-41288303(+)$1	264	156	195	19.1514

#otherMatches

#Seq PSSM
UGGCCAACUGGCUGCCUGUGGUUUGGCACACAGUGCCUG	chr19:10226830-10227081(-)$1	251	196	235	18.3913
CUCUUUACCCACAUUCUGUGUCAUGAGUGUGCCGGGUAG	chr9:101598855-101599148(+)$1	293	217	256	15.9435
UCGUUAACuuuuuuuuuuuuuuuuaagaauuauuuaauG	chr12:53869269-53869504(+)$1	235	56	95	18.7644
GUCUCUGGAUCUCUCAGGAUGUGGUGGGGGUGGGAGGUG	chr3:48586883-48587157(-)$1	274	48	87	18.8148
UGGGACCUCUGGCCCGGCAGCCAACGGAUGCUGAGGGGU	chr14:105814565-105814797(+)$1	232	34	73	18.3652
GGGACGGGCUGGGAGGAGAAGGAGCCCCCAGCCCAGCCU	chr11:432146-432382(-)$1	236	64	103	15.9328
GGAGCUCCAGGGACCUAUCAGGACGGGGACCUGUGGGGA	chr11:291342-291596(+)$1	254	94	133	19.7811
UGUGAUAUUCAUCAAUAAAAAUGAGUUGAUAAUAUGCAG	chrX:135594252-135594580(+)$1	328	204	243	16.2085
GCAUGUGAGCCAGGGUGUGUGUGAGCCAGGGUGGAUGUG	chr11:858336-858642(-)$1	306	133	172	19.7995
UGUGUGUGUCAGUGUGAUUACACCCACAAACAUACUCCC	chr17:27443447-27443736(-)$1	289	47	86	19.3664
AAACUUGGUGUCUGCCGAUGCGGGGGCACGGGCCAGGGU	chr19:50305775-50306096(+)$1	321	213	252	18.6839
CCACUGGGACCCAGCUACAGAGUCAGUGGUGAGCAGUGG	chr7:100173805-100174111(-)$1	306	95	134	20.6776
uuguuuaguaaaugcuguaugccaggcauuuugcuaggc	chr8:28657656-28657972(-)$1	316	263	302	20.5535
UGACGUGCAUGUUGACUUUCGUCCGUGUUUUAUGUGUGU	chr9:139339415-139339699(-)$1	284	81	120	15.6042
GGUUUUGAUGAGGACUCGUAUUUCAGCUCCUGUCUCUCC	chr4:718790-719023(+)$1	233	170	209	17.9967
GUGUAAUUUGUGUAUAUGUAUAUGUUGUCAUAUAAAUAC	chr5:65364486-65364741(+)$1	255	20	59	13.4487
agggcagugggagaguggaaguugacacccagguuuuga	chr15:66975940-66976224(+)$1	284	11	50	18.4433
GUGCAUGUGUGUGAGAUUGUUCCUUCUGUAACAUGGGGG	chr20:35486281-35486528(-)$1	247	157	196	19.6992
GUGCGGGGAUGUUGUCAAGCCCCAGGCGGCUGCACUCCC	chr19:2343389-2343639(+)$1	250	201	240	18.7298
AGCCUGCCUGUCUUGUUUCUAUGUAGGAGUCAGACAAAA	chr2:74441005-74441286(+)$1	281	174	213	19.5781
UGCAGUGCCCAGGUGAAUUCAGGGUGGCCAGGGCAGGGC	chr19:2188246-2188511(+)$1	265	30	69	19.1646
CACGGCCGAGGGAGGGAUUAGUGGCGCUUUUAGGCCUGG	chr19:2338463-2338716(+)$1	253	23	62	17.4651
GCGCGGCCCUGUGGGAUGGUGCUCUGUGGCAGGGCUGGC	chr17:80805924-80806159(+)$1	235	28	67	19.9702
CCACCUUCUUACCAGCGAGAUGGAGCUGAUCAGGAAGGC	chr10:72511450-72511724(+)$1	274	208	247	20.5381
UCCUGUUGGAGCAUUGGGAUAUAACAGGUGUAAACCGAG	chr12:132402684-132403012(+)$1	328	214	253	19.2383
UUGUUAGACUGCAUGUGAGAGACGGCUGCAGAGAGCUUG	chr21:47957944-47958277(+)$1	333	279	318	17.4493
UGGGCAGGUGGCUGGGGCCAGCUACCCUCUUCCUGCUGA	chr19:2339321-2339647(+)$1	326	146	185	18.9006
UCUGCAGCAAUUUCUCGAGUAAAUGUGGACAUGCAGACC	chr22:49921577-49921821(-)$1	244	135	174	18.6716
aaugcaugcuccugacccuuacaugucugcacugcuucc	chr2:236529041-236529328(+)$1	287	64	103	17.1350
AGACAGCUCCCUGGGCGGCUUUUCCUGACCCUAGUUGUC	chr9:139281603-139281943(-)$1	340	261	300	13.3259
CAGUGAGGCUGUGGGCAGAGUAAGGACCCACAGGAUUGG	chr4:1347388-1347697(+)$1	309	51	90	18.1251
AGAGGGACAGCAUGGGUGCACCUUUUCUGCUUGCCGACU	chr22:50035042-50035304(-)$1	262	202	241	18.4616
UUCUAGGGGAGGGAGGCUUAUAACUCUACCCUUCCCUGG	chr20:42344246-42344539(+)$1	293	243	282	21.2668
GGAGCUGCUGAGGUUGGGAAGACACAGGCCAGGUAGUGC	chr7:100229804-100230127(-)$1	323	145	184	19.8667
GGCUGGGGGGUGGCAGAGAGAAGGCUCCUCCUCCCUUCC	chr9:131832644-131832927(+)$1	283	98	137	17.4519
GGGACUCCCUGGCCACACCUGAGCGGGCCAGGUUGCAUG	chr16:85668761-85669045(+)$1	284	224	263	17.0042
uugugCAucuaucugcuuguuugugcaucugugugcaug	chr22:49921030-49921273(-)$1	243	157	196	19.1600
GUGGCUGUCCACGUGAGGUCAUAGUCACAGCAUGGAGGC	chr19:54970382-54970614(+)$1	232	149	188	16.8777
ugcauuuguguguguguuugugugugcaugcaugugugu	chr1:228331685-228331959(+)$1	274	82	121	18.7190
uccacaggcaggucaucccaacgaguguguagcuuucag	chr2:160594997-160595259(+)$1	262	71	110	20.5136
GGCCCCUGGUGGGGAUCUCGGGAAGUGCAGCCAGGGGGC	chr17:79827155-79827456(-)$1	301	70	109	16.3863
GUGUGUUUGUGUUUGUGUAUUUGAACAUGCAUUUGGCUA	chr3:128213805-128214068(+)$1	263	188	227	17.4812
UAAUUUUUUCCCAAUAUUUAGACUUGUUUCAUAGAAUUA	chr9:4999756-5000072(+)$1	316	66	105	19.1054
CCAGGUGUGAGUCUCAGAACAACCAAUGACAGUCAGGGC	chr7:99002158-99002388(-)$1	230	39	78	14.6063
ugugugugugcaugugcugugugugugcaugugugCAUG	chr17:75211059-75211363(+)$1	304	88	127	13.6864
ccaguaaggaguggguggacagaggcacacaguggacug	chr16:85678017-85678228(+)$1	211	23	62	18.4776
GGCUCACGUGUUGGGAAGUUGUGGUCUGCGUGGCUCAUG	chr5:882440-882763(-)$1	323	207	246	17.8637
CUGUAUGAGGAGGUUUGUGGUUGAAUACCUCCUAGAAGG	chr20:60899731-60899989(-)$1	258	32	71	19.9625
CUUAGGGCCCUCCGUGUCCCGGGUUACAGAGGUGCCUUG	chr19:3096024-3096282(+)$1	258	137	176	17.5030
CUGUAUGAGGAGGUUUGUGGUUGAAUACCUCCUAGAAGG	chr20:60899789-60900034(-)$1	245	77	116	19.9625
CCCCCGGAGGGGGCGCCUUUUCCUGUGACCCCCCAAGCA	chr16:85681532-85681786(+)$1	254	27	66	17.7953
CUGGAGUCCUCAGGCCUCAGCAGUGGCUGGGUUCACUGC	chr2:132269485-132269764(+)$1	279	214	253	18.6695
ugacuugguugauuucucaccguuguaguuuuuccaucu	chr7:2215279-2215570(-)$1	291	35	74	20.4764
GGCUGGCUCUGCAGAUCCUAUGUAAUUCAGAGCCUGGAG	chr1:41288039-41288303(+)$1	264	156	195	19.1514

#DB
((((..((((..((((........))))..))))))).)	chr19:10226830-10227081(-)$1	1	196	235	18.3913
((((((((((((((((........))))))...))))))	chr9:101598855-101599148(+)$1	1	217	256	15.9435
(((((((.(..(((((........)))))..).))))))	chr12:53869269-53869504(+)$1	1	56	95	18.7644
((((((....((((((........))))))....))).)	chr3:48586883-48587157(-)$1	1	48	87	18.8148
((((((((((((((((........)))..))).))))))	chr14:105814565-105814797(+)$1	1	34	73	18.3652
(((..((((((((.((........))))))))))..)))	chr11:432146-432382(-)$1	1	64	103	15.9328
((..(((((((..(((........)))..)))).)))..	chr11:291342-291596(+)$1	1	94	133	19.7811
(.(((((((.((((((........))))))))))).)).	chrX:135594252-135594580(+)$1	1	204	243	16.2085
((((((..(((..(((........)))..)))..)))))	chr11:858336-858642(-)$1	1	133	172	19.7995
.(.((((((...((((........)))).)))))).)..	chr17:27443447-27443736(-)$1	1	47	86	19.3664
(..((((((.(.((((........)))).).))))))..	chr19:50305775-50306096(+)$1	1	213	252	18.6839
((((((..(((..(((........))))))...))))))	chr7:100173805-100174111(-)$1	1	95	134	20.6776
)(((((((((((((((........)))).))))))))))	chr8:28657656-28657972(-)$1	1	263	302	20.5535
(((((((((((..(((..........))).)))))))))	chr9:139339415-139339699(-)$1	1	81	120	15.6042
((....(((.((((((........)).)))))))...))	chr4:718790-719023(+)$1	1	170	209	17.9967
(((((.((((((((((.........))).))))))))))	chr5:65364486-65364741(+)$1	1	20	59	13.4487
(((((..((((...((........)).)))).)))))).	chr15:66975940-66976224(+)$1	1	11	50	18.4433
.(.(((((.....(((........)))...))))).).)	chr20:35486281-35486528(-)$1	1	157	196	19.6992
(((((.....((((((........)))))))))))))))	chr19:2343389-2343639(+)$1	1	201	240	18.7298
....((.(((.(((.(........).))).))).))...	chr2:74441005-74441286(+)$1	1	174	213	19.5781
(((..(((((.(((.(........).))).)))))..))	chr19:2188246-2188511(+)$1	1	30	69	19.1646
((.((((..(((((.(........).))))).)))))))	chr19:2338463-2338716(+)$1	1	23	62	17.4651
((.(((((((((.(.(........).).)))))))))))	chr17:80805924-80806159(+)$1	1	28	67	19.9702
.(.(((((((..((((........))))...))))))).	chr10:72511450-72511724(+)$1	1	208	247	20.5381
((((..(((.((((((........)).))))...)))))	chr12:132402684-132403012(+)$1	1	214	253	19.2383
..(((...(((((.((........)))))))..)))...	chr21:47957944-47958277(+)$1	1	279	318	17.4493
(.((((((.((..(((........))).)).)))))).)	chr19:2339321-2339647(+)$1	1	146	185	18.9006
((((((.....(((.(........).)))..))))))))	chr22:49921577-49921821(-)$1	1	135	174	18.6716
...((((((....(((........))).))).)))((((	chr2:236529041-236529328(+)$1	1	64	103	17.1350
((((((((....((((((......))).))).)))))))	chr9:139281603-139281943(-)$1	1	261	300	13.3259
((.(....((((((((........).)))))))......	chr4:1347388-1347697(+)$1	1	51	90	18.1251
((..((..((((.(((........)))))))..))..))	chr22:50035042-50035304(-)$1	1	202	241	18.4616
(...((((((((((((........))).)))))))))))	chr20:42344246-42344539(+)$1	1	243	282	21.2668
((.((((((..(.(((........))).)..)))))).)	chr7:100229804-100230127(-)$1	1	145	184	19.8667
((..((((((.((.((........)))).))))))..))	chr9:131832644-131832927(+)$1	1	98	137	17.4519
(((.((((((((((.(........))))))))......)	chr16:85668761-85669045(+)$1	1	224	263	17.0042
..((((((.((..(((........)))..)).)))))).	chr22:49921030-49921273(-)$1	1	157	196	19.1600
((((((.((((.((((........))))....)))))))	chr19:54970382-54970614(+)$1	1	149	188	16.8777
(((((.((((((((((........)))))))))).))))	chr1:228331685-228331959(+)$1	1	82	121	18.7190
(((((((((....(((........)))....))))...)	chr2:160594997-160595259(+)$1	1	71	110	20.5136
((((((((((..(.((........)).).)))).)))))	chr17:79827155-79827456(-)$1	1	70	109	16.3863
(((((((.((((.(((........))).))))..)))..	chr3:128213805-128214068(+)$1	1	188	227	17.4812
(((((((.....((((........))))....)))))))	chr9:4999756-5000072(+)$1	1	66	105	19.1054
(..(.(.(((.(.(((..........))).).))).).)	chr7:99002158-99002388(-)$1	1	39	78	14.6063
)((..((((((((((((.........)))))))))))).	chr17:75211059-75211363(+)$1	1	88	127	13.6864
(((.(.....(((.((........)).)))).))).)))	chr16:85678017-85678228(+)$1	1	23	62	18.4776
)))((((((....(((........)))))))))((((..	chr5:882440-882763(-)$1	1	207	246	17.8637
((.....(((((((.(........).)))))))))))))	chr20:60899731-60899989(-)$1	1	32	71	19.9625
)))(((((((((.(((........))).)))).))))).	chr19:3096024-3096282(+)$1	1	137	176	17.5030
((.....(((((((.(........).)))))))))))))	chr20:60899789-60900034(-)$1	1	77	116	19.9625
((((((..((((((((........))).)))))......	chr16:85681532-85681786(+)$1	1	27	66	17.7953
.((.(((.(((((.((........)))))))...))).)	chr2:132269485-132269764(+)$1	1	214	253	18.6695
.(((.(((..((((.(........).))))...)))...	chr7:2215279-2215570(-)$1	1	35	74	20.4764
))..(((((((..(((........))))))))))(((((	chr1:41288039-41288303(+)$1	1	156	195	19.1514

#PSSM
c : 0.14	g : 0.14	= : 0.14	f : 0.11	d : 0.07	# : 0.05	b : 0.05	[ : 0.05	h : 0.05	e : 0.03	i : 0.03	" : 0.03	E : 0.01	: : 0.01	
= : 0.18	c : 0.16	f : 0.11	b : 0.09	g : 0.07	a : 0.05	h : 0.05	d : 0.03	[ : 0.03	! : 0.03	# : 0.03	" : 0.03	E : 0.01	e : 0.01	: : 0.01	i : 0.01	
c : 0.14	[ : 0.12	f : 0.11	= : 0.11	! : 0.09	g : 0.05	d : 0.05	b : 0.05	h : 0.05	# : 0.03	: : 0.03	$ : 0.03	E : 0.01	e : 0.01	" : 0.01	i : 0.01	
f : 0.18	c : 0.11	! : 0.11	= : 0.11	g : 0.07	d : 0.05	e : 0.05	[ : 0.05	h : 0.05	# : 0.03	a : 0.03	$ : 0.03	b : 0.01	i : 0.01	" : 0.01	: : 0.01	
f : 0.22	c : 0.12	= : 0.11	! : 0.09	g : 0.09	e : 0.07	# : 0.03	b : 0.03	d : 0.03	i : 0.03	h : 0.03	[ : 0.03	$ : 0.03	a : 0.01	
f : 0.20	c : 0.12	g : 0.09	= : 0.09	e : 0.07	$ : 0.07	! : 0.05	d : 0.05	h : 0.03	# : 0.03	[ : 0.03	b : 0.03	i : 0.03	" : 0.01	a : 0.01	
f : 0.14	c : 0.14	g : 0.11	! : 0.09	= : 0.09	$ : 0.09	d : 0.07	e : 0.07	[ : 0.05	# : 0.03	i : 0.03	h : 0.01	" : 0.01	
f : 0.14	g : 0.12	d : 0.11	c : 0.11	! : 0.09	= : 0.09	e : 0.07	$ : 0.07	[ : 0.05	# : 0.03	i : 0.03	h : 0.01	" : 0.01	
d : 0.16	g : 0.14	c : 0.12	f : 0.11	e : 0.09	$ : 0.09	= : 0.07	# : 0.03	! : 0.03	i : 0.03	[ : 0.03	a : 0.01	h : 0.01	
d : 0.14	g : 0.14	# : 0.09	$ : 0.09	e : 0.09	[ : 0.07	c : 0.07	= : 0.07	! : 0.05	f : 0.03	i : 0.03	b : 0.03	h : 0.01	" : 0.01	
d : 0.16	g : 0.11	! : 0.09	f : 0.07	c : 0.07	= : 0.07	[ : 0.07	e : 0.07	# : 0.07	$ : 0.05	i : 0.03	b : 0.03	h : 0.01	" : 0.01	a : 0.01	
! : 0.18	d : 0.11	e : 0.09	c : 0.09	g : 0.09	f : 0.07	# : 0.07	= : 0.05	" : 0.03	[ : 0.03	$ : 0.03	i : 0.03	a : 0.03	h : 0.01	b : 0.01	
d : 0.18	! : 0.12	c : 0.11	[ : 0.11	e : 0.09	g : 0.09	f : 0.07	# : 0.05	= : 0.03	h : 0.01	" : 0.01	$ : 0.01	i : 0.01	b : 0.01	a : 0.01	
c : 0.44	d : 0.18	[ : 0.11	f : 0.07	g : 0.07	e : 0.03	= : 0.03	" : 0.01	a : 0.01	
c : 0.38	b : 0.16	[ : 0.16	d : 0.12	f : 0.07	= : 0.03	e : 0.01	g : 0.01	
c : 0.38	a : 0.18	b : 0.16	d : 0.12	f : 0.07	= : 0.03	e : 0.01	
q : 0.90	s : 0.03	r : 0.01	c : 0.01	= : 0.01	
q : 0.90	s : 0.03	r : 0.03	c : 0.01	
q : 0.90	s : 0.03	r : 0.03	o : 0.01	
q : 0.90	s : 0.03	r : 0.03	o : 0.01	
q : 0.90	s : 0.03	r : 0.03	o : 0.01	
q : 0.90	s : 0.03	r : 0.03	o : 0.01	
q : 0.90	s : 0.03	r : 0.03	o : 0.01	
q : 0.90	s : 0.03	r : 0.03	o : 0.01	
c : 0.33	a : 0.18	b : 0.16	d : 0.12	f : 0.07	s : 0.03	r : 0.03	e : 0.01	= : 0.01	
c : 0.35	b : 0.16	] : 0.16	d : 0.12	f : 0.07	s : 0.03	e : 0.01	g : 0.01	= : 0.01	r : 0.01	
c : 0.44	d : 0.14	] : 0.09	f : 0.07	e : 0.07	g : 0.07	= : 0.03	h : 0.01	a : 0.01	b : 0.01	
d : 0.22	] : 0.16	c : 0.14	f : 0.09	g : 0.09	e : 0.07	2 : 0.07	= : 0.03	h : 0.01	3 : 0.01	b : 0.01	4 : 0.01	a : 0.01	
c : 0.16	d : 0.12	] : 0.11	2 : 0.09	f : 0.09	e : 0.09	g : 0.09	4 : 0.05	3 : 0.03	i : 0.03	= : 0.03	h : 0.01	b : 0.01	a : 0.01	
d : 0.16	f : 0.12	c : 0.11	g : 0.11	2 : 0.07	] : 0.07	e : 0.07	= : 0.05	4 : 0.05	3 : 0.03	i : 0.03	b : 0.03	h : 0.01	a : 0.01	
d : 0.16	e : 0.12	g : 0.11	c : 0.09	= : 0.09	3 : 0.07	4 : 0.07	2 : 0.05	f : 0.05	] : 0.03	i : 0.03	a : 0.03	h : 0.01	b : 0.01	
f : 0.12	g : 0.12	] : 0.12	d : 0.11	3 : 0.09	= : 0.09	c : 0.07	e : 0.07	4 : 0.05	i : 0.03	2 : 0.03	a : 0.01	h : 0.01	
f : 0.16	g : 0.12	d : 0.11	= : 0.11	3 : 0.09	c : 0.09	e : 0.07	2 : 0.07	] : 0.05	i : 0.03	4 : 0.01	h : 0.01	6 : 0.01	
f : 0.18	= : 0.14	g : 0.11	c : 0.11	d : 0.09	e : 0.07	] : 0.05	2 : 0.03	i : 0.03	3 : 0.03	6 : 0.03	4 : 0.01	h : 0.01	b : 0.01	8 : 0.01	
c : 0.20	f : 0.20	= : 0.12	g : 0.11	e : 0.07	d : 0.07	b : 0.03	i : 0.03	6 : 0.03	2 : 0.01	3 : 0.01	] : 0.01	h : 0.01	8 : 0.01	
f : 0.16	c : 0.14	= : 0.12	g : 0.11	] : 0.09	2 : 0.07	d : 0.07	3 : 0.03	i : 0.03	6 : 0.03	h : 0.03	b : 0.01	e : 0.01	8 : 0.01	
f : 0.18	c : 0.12	= : 0.12	g : 0.09	a : 0.05	3 : 0.05	e : 0.05	2 : 0.05	6 : 0.05	d : 0.05	i : 0.03	h : 0.03	b : 0.01	4 : 0.01	8 : 0.01	
] : 0.12	f : 0.12	= : 0.12	g : 0.11	c : 0.09	b : 0.05	3 : 0.05	e : 0.05	6 : 0.05	2 : 0.03	d : 0.03	h : 0.03	4 : 0.01	5 : 0.01	n : 0.01	8 : 0.01	
c : 0.14	= : 0.12	g : 0.09	f : 0.09	] : 0.07	b : 0.07	3 : 0.05	d : 0.05	2 : 0.03	e : 0.03	a : 0.03	6 : 0.03	h : 0.03	4 : 0.01	5 : 0.01	n : 0.01	: : 0.01	8 : 0.01	

#score	985.2178710527492
#seq	54
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_CDS_m2_run1.txt

#BEAR
ffffwwwwwwwwwwwwww	chr7:104753484-104753743(+)$1	259	94	112	20.1254
ggggwwwwwwwwwwwwww	chr17:80218817-80219039(-)$1	222	60	78	19.6774
ddddvvvvvvvvvvvvvd	chr21:47612973-47613185(-)$1	212	50	68	19.2548
[ccc^^^^^^^^^^^^^^	chr10:50534929-50535212(+)$1	283	135	153	17.8241
ffff^^^^^^^^^^^^^^	chrM:11197-11399(+)$1	202	78	96	18.1244
ggggwwwwwwwwwwwwww	chr17:80218839-80219067(-)$1	228	88	106	19.6774
==bbvvvvvvvvvvvvvb	chrM:3649-3867(+)$1	218	18	36	19.1719
ffffvvvvvvvvvvvvvf	chr21:47613493-47613702(-)$1	209	118	136	20.1425
:cccuuuuuuuuuuuucc	chr8:91094784-91095120(-)$1	336	141	159	17.5385
ffff^^^^^^^^^^^^^^	chrM:11226-11434(+)$1	208	49	67	18.1244
"ccc^^^^^^^^^^^^^^	chr5:38950305-38950618(-)$1	313	53	71	17.6239
ddddtttttttttttddd	chr17:80218669-80218917(-)$1	248	193	211	15.0157
!dddduuuuuuuuuuuud	chrM:12557-12783(+)$1	226	181	199	18.0515
ffff^^^^^^^^^^^^^^	chrM:11174-11378(+)$1	204	101	119	18.1244
ffffxxxxxxxxxxxxxx	chr22:24313487-24313753(-)$1	266	152	170	16.9284
e[bb^^^^^^^^^^^^^^	chrM:10983-11186(+)$1	203	113	131	17.1988
ffff^^^^^^^^^^^^^^	chrM:11193-11397(+)$1	204	82	100	18.1244
ffff^^^^^^^^^^^^^^	chrM:6291-6503(+)$1	212	91	109	18.1244
ffff^^^^^^^^^^^^^^	chrM:11185-11389(+)$1	204	90	108	18.1244
ddddtttttttttttddd	chr15:59373166-59373518(+)$1	352	168	186	15.0157
hhhhhuuuuuuuuuuuuh	chr22:24313601-24313851(-)$1	250	18	36	16.6861
ffffvvvvvvvvvvvvvf	chr21:47613506-47613764(-)$1	258	180	198	20.1425
[cccbbtttttttttttb	chr20:47704457-47704744(+)$1	287	6	24	15.6252
e[bb^^^^^^^^^^^^^^	chrM:11056-11268(+)$1	212	40	58	17.1988
ffff^^^^^^^^^^^^^^	chrM:11167-11369(+)$1	202	108	126	18.1244
eeeevvvvvvvvvvvvve	chr9:126164023-126164307(-)$1	284	8	26	19.4117
eeee^^^^^^^^^^^^^^	chrM:11890-12121(+)$1	231	29	47	17.3534
ffff^^^^^^^^^^^^^^	chrM:11178-11385(+)$1	207	97	115	18.1244
ffff^^^^^^^^^^^^^^	chrM:11170-11374(+)$1	204	105	123	18.1244
ffffvvvvvvvvvvvvvf	chr21:47612921-47613172(-)$1	251	66	84	20.1425
dccctttttttttttccc	chr3:45636215-45636473(+)$1	258	149	167	15.8646
ddddyyyyyyyyyyyyyy	chrM:11662-11868(+)$1	206	28	46	18.8169
e[bb^^^^^^^^^^^^^^	chrM:11021-11256(+)$1	235	75	93	17.1988
[cccxxxxxxxxxxxxxx	chr10:70516228-70516489(+)$1	261	9	27	16.6282
hhhhhuuuuuuuuuuuuh	chr22:24313682-24313905(-)$1	223	72	90	16.6861
fffffftttttttttttf	chr17:80218772-80219017(-)$1	245	1	19	15.9441
eeeevvvvvvvvvvvvve	chr6:42627242-42627519(+)$1	277	218	236	19.4117
ffffvvvvvvvvvvvvvf	chr21:47613502-47613706(-)$1	204	122	140	20.1425
ffff^^^^^^^^^^^^^^	chrM:11217-11426(+)$1	209	58	76	18.1244
[cccxxxxxxxxxxxxxx	chr10:70516221-70516428(+)$1	207	16	34	16.6282
&cccvvvvvvvvvvvvvc	chrM:11639-11862(+)$1	223	158	176	19.2266
ffff^^^^^^^^^^^^^^	chrM:11204-11417(+)$1	213	71	89	18.1244
iiiiyyyyyyyyyyyyyy	chrM:6479-6684(+)$1	205	151	169	19.1022
dddduuuuuuuuuuuudd	chr6:31715102-31715374(+)$1	272	42	60	17.8705
dddduuuuuuuuuuuudd	chr21:47612610-47612839(-)$1	229	0	18	17.8705
ddddvvvvvvvvvvvvvd	chrM:9241-9457(+)$1	216	144	162	19.2548
ffff^^^^^^^^^^^^^^	chrM:11190-11393(+)$1	203	85	103	18.1244
fffffftttttttttttf	chr17:80218867-80219112(-)$1	245	96	114	15.9441
cccccctttttttttttc	chr17:38243000-38243272(+)$1	272	168	186	16.0635
!dddduuuuuuuuuuuud	chrM:12583-12795(+)$1	212	155	173	18.0515
hhhhhuuuuuuuuuuuuh	chr21:47612321-47612548(-)$1	227	3	21	16.6861
^^^^^^^^^^^^^^^^^^	chr19:2326014-2326299(-)$1	285	231	249	16.4518
ffffvvvvvvvvvvvvvf	chr21:47613470-47613677(-)$1	207	93	111	20.1425
ffff^^^^^^^^^^^^^^	chrM:11199-11403(+)$1	204	76	94	18.1244
ddddtttttttttttddd	chr2:179413610-179413915(+)$1	305	192	210	15.0157
ffffyyyyyyyyyyyyyy	chrM:8358-8562(+)$1	204	31	49	19.7466
ffffvvvvvvvvvvvvvf	chr21:47613477-47613693(-)$1	216	109	127	20.1425

#otherMatches

#Seq PSSM
UCCUCAUCUCCAGCCCCA	chr7:104753484-104753743(+)$1	259	94	112	20.1254
ACUUACAGCUAACAAAAG	chr17:80218817-80219039(-)$1	222	60	78	19.6774
augcagauacacccacag	chr21:47612973-47613185(-)$1	212	50	68	19.2548
UCCCAAGACGACCUCACC	chr10:50534929-50535212(+)$1	283	135	153	17.8241
CUCACUAAACAUUCUACU	chrM:11197-11399(+)$1	202	78	96	18.1244
ACUUACAGCUAACAAAAG	chr17:80218839-80219067(-)$1	228	88	106	19.6774
UGAGCAUCAAACUCAAAC	chrM:3649-3867(+)$1	218	18	36	19.1719
ugccacacacagacauag	chr21:47613493-47613702(-)$1	209	118	136	20.1425
CGCGGACACAGACACACG	chr8:91094784-91095120(-)$1	336	141	159	17.5385
CUCACUAAACAUUCUACU	chrM:11226-11434(+)$1	208	49	67	18.1244
AGGCGAAUCAGAACACUU	chr5:38950305-38950618(-)$1	313	53	71	17.6239
GUACACCAUCAGucagua	chr17:80218669-80218917(-)$1	248	193	211	15.0157
UAACAACCUAUUCCAACU	chrM:12557-12783(+)$1	226	181	199	18.0515
CUCACUAAACAUUCUACU	chrM:11174-11378(+)$1	204	101	119	18.1244
UCAUCCUCAUAUGAAAUA	chr22:24313487-24313753(-)$1	266	152	170	16.9284
ACAGAACUAAUCAUAUUU	chrM:10983-11186(+)$1	203	113	131	17.1988
CUCACUAAACAUUCUACU	chrM:11193-11397(+)$1	204	82	100	18.1244
GGGCCAUCAAUUUCAUCA	chrM:6291-6503(+)$1	212	91	109	18.1244
CUCACUAAACAUUCUACU	chrM:11185-11389(+)$1	204	90	108	18.1244
GCUGCACCAAUCCCUCAG	chr15:59373166-59373518(+)$1	352	168	186	15.0157
CUUUUUCUCUGUCUCCUG	chr22:24313601-24313851(-)$1	250	18	36	16.6861
ugccacacacagacauag	chr21:47613506-47613764(-)$1	258	180	198	20.1425
UGCGCUUUUUUCCCCCCA	chr20:47704457-47704744(+)$1	287	6	24	15.6252
ACAGAACUAAUCAUAUUU	chrM:11056-11268(+)$1	212	40	58	17.1988
CUCACUAAACAUUCUACU	chrM:11167-11369(+)$1	202	108	126	18.1244
GUCCCCUCUUUAAAACUG	chr9:126164023-126164307(-)$1	284	8	26	19.4117
CCUGAUCAAAUAUCACUC	chrM:11890-12121(+)$1	231	29	47	17.3534
CUCACUAAACAUUCUACU	chrM:11178-11385(+)$1	207	97	115	18.1244
CUCACUAAACAUUCUACU	chrM:11170-11374(+)$1	204	105	123	18.1244
ugccacacacagacauag	chr21:47612921-47613172(-)$1	251	66	84	20.1425
CUGCAGCAUGGAUAAGUA	chr3:45636215-45636473(+)$1	258	149	167	15.8646
GGCGCAGUCAUUCUCAUA	chrM:11662-11868(+)$1	206	28	46	18.8169
ACAGAACUAAUCAUAUUU	chrM:11021-11256(+)$1	235	75	93	17.1988
CAGGCACUGAACGCUAAU	chr10:70516228-70516489(+)$1	261	9	27	16.6282
CUUUUUCUCUGUCUCCUG	chr22:24313682-24313905(-)$1	223	72	90	16.6861
UCAUUCUCUAAUGCCAUG	chr17:80218772-80219017(-)$1	245	1	19	15.9441
CAAUUCGUUACAUGUAUA	chr6:42627242-42627519(+)$1	277	218	236	19.4117
ugccacacacagacauag	chr21:47613502-47613706(-)$1	204	122	140	20.1425
CUCACUAAACAUUCUACU	chrM:11217-11426(+)$1	209	58	76	18.1244
CAGGCACUGAACGCUAAU	chr10:70516221-70516428(+)$1	207	16	34	16.6282
AGGACUUCAAACUCUACU	chrM:11639-11862(+)$1	223	158	176	19.2266
CUCACUAAACAUUCUACU	chrM:11204-11417(+)$1	213	71	89	18.1244
GUUUAUAUUCUUAUCCUA	chrM:6479-6684(+)$1	205	151	169	19.1022
CCUGCCUUAUCCCUCACA	chr6:31715102-31715374(+)$1	272	42	60	17.8705
ugcacauacaggucuaug	chr21:47612610-47612839(-)$1	229	0	18	17.8705
AUGUAACACGAGAAAGCA	chrM:9241-9457(+)$1	216	144	162	19.2548
CUCACUAAACAUUCUACU	chrM:11190-11393(+)$1	203	85	103	18.1244
UCAUUCUCUAAUGCCAUG	chr17:80218867-80219112(-)$1	245	96	114	15.9441
ACCCAGUACAGGCUCAUC	chr17:38243000-38243272(+)$1	272	168	186	16.0635
UAACAACCUAUUCCAACU	chrM:12583-12795(+)$1	212	155	173	18.0515
GAUGCACCCGCAGUAUCG	chr21:47612321-47612548(-)$1	227	3	21	16.6861
GUGCUCACAUCUCUCCCC	chr19:2326014-2326299(-)$1	285	231	249	16.4518
ugccacacacagacauag	chr21:47613470-47613677(-)$1	207	93	111	20.1425
CUCACUAAACAUUCUACU	chrM:11199-11403(+)$1	204	76	94	18.1244
GCCACCAUCAAACACUGG	chr2:179413610-179413915(+)$1	305	192	210	15.0157
AUGGCCCACCAUAAUUAC	chrM:8358-8562(+)$1	204	31	49	19.7466
ugccacacacagacauag	chr21:47613477-47613693(-)$1	216	109	127	20.1425

#DB
((((..............	chr7:104753484-104753743(+)$1	1	94	112	20.1254
((((..............	chr17:80218817-80219039(-)$1	1	60	78	19.6774
((((.............)	chr21:47612973-47613185(-)$1	1	50	68	19.2548
.(((..............	chr10:50534929-50535212(+)$1	1	135	153	17.8241
((((..............	chrM:11197-11399(+)$1	1	78	96	18.1244
((((..............	chr17:80218839-80219067(-)$1	1	88	106	19.6774
((((.............)	chrM:3649-3867(+)$1	1	18	36	19.1719
((((.............)	chr21:47613493-47613702(-)$1	1	118	136	20.1425
.(((............))	chr8:91094784-91095120(-)$1	1	141	159	17.5385
((((..............	chrM:11226-11434(+)$1	1	49	67	18.1244
.(((..............	chr5:38950305-38950618(-)$1	1	53	71	17.6239
((((...........)))	chr17:80218669-80218917(-)$1	1	193	211	15.0157
.((((............)	chrM:12557-12783(+)$1	1	181	199	18.0515
((((..............	chrM:11174-11378(+)$1	1	101	119	18.1244
((((..............	chr22:24313487-24313753(-)$1	1	152	170	16.9284
(.((..............	chrM:10983-11186(+)$1	1	113	131	17.1988
((((..............	chrM:11193-11397(+)$1	1	82	100	18.1244
((((..............	chrM:6291-6503(+)$1	1	91	109	18.1244
((((..............	chrM:11185-11389(+)$1	1	90	108	18.1244
((((...........)))	chr15:59373166-59373518(+)$1	1	168	186	15.0157
(((((............)	chr22:24313601-24313851(-)$1	1	18	36	16.6861
((((.............)	chr21:47613506-47613764(-)$1	1	180	198	20.1425
.(((((...........)	chr20:47704457-47704744(+)$1	1	6	24	15.6252
(.((..............	chrM:11056-11268(+)$1	1	40	58	17.1988
((((..............	chrM:11167-11369(+)$1	1	108	126	18.1244
((((.............)	chr9:126164023-126164307(-)$1	1	8	26	19.4117
((((..............	chrM:11890-12121(+)$1	1	29	47	17.3534
((((..............	chrM:11178-11385(+)$1	1	97	115	18.1244
((((..............	chrM:11170-11374(+)$1	1	105	123	18.1244
((((.............)	chr21:47612921-47613172(-)$1	1	66	84	20.1425
((((...........)))	chr3:45636215-45636473(+)$1	1	149	167	15.8646
((((..............	chrM:11662-11868(+)$1	1	28	46	18.8169
(.((..............	chrM:11021-11256(+)$1	1	75	93	17.1988
.(((..............	chr10:70516228-70516489(+)$1	1	9	27	16.6282
(((((............)	chr22:24313682-24313905(-)$1	1	72	90	16.6861
((((((...........)	chr17:80218772-80219017(-)$1	1	1	19	15.9441
((((.............)	chr6:42627242-42627519(+)$1	1	218	236	19.4117
((((.............)	chr21:47613502-47613706(-)$1	1	122	140	20.1425
((((..............	chrM:11217-11426(+)$1	1	58	76	18.1244
.(((..............	chr10:70516221-70516428(+)$1	1	16	34	16.6282
.(((.............)	chrM:11639-11862(+)$1	1	158	176	19.2266
((((..............	chrM:11204-11417(+)$1	1	71	89	18.1244
((((..............	chrM:6479-6684(+)$1	1	151	169	19.1022
((((............))	chr6:31715102-31715374(+)$1	1	42	60	17.8705
((((............))	chr21:47612610-47612839(-)$1	1	0	18	17.8705
((((.............)	chrM:9241-9457(+)$1	1	144	162	19.2548
((((..............	chrM:11190-11393(+)$1	1	85	103	18.1244
((((((...........)	chr17:80218867-80219112(-)$1	1	96	114	15.9441
((((((...........)	chr17:38243000-38243272(+)$1	1	168	186	16.0635
.((((............)	chrM:12583-12795(+)$1	1	155	173	18.0515
(((((............)	chr21:47612321-47612548(-)$1	1	3	21	16.6861
..................	chr19:2326014-2326299(-)$1	1	231	249	16.4518
((((.............)	chr21:47613470-47613677(-)$1	1	93	111	20.1425
((((..............	chrM:11199-11403(+)$1	1	76	94	18.1244
((((...........)))	chr2:179413610-179413915(+)$1	1	192	210	15.0157
((((..............	chrM:8358-8562(+)$1	1	31	49	19.7466
((((.............)	chr21:47613477-47613693(-)$1	1	109	127	20.1425

#PSSM
f : 0.42	d : 0.15	e : 0.10	[ : 0.07	h : 0.05	g : 0.03	! : 0.03	= : 0.01	: : 0.01	" : 0.01	& : 0.01	i : 0.01	c : 0.01	^ : 0.01	
f : 0.42	d : 0.17	c : 0.15	[ : 0.05	h : 0.05	e : 0.05	g : 0.03	= : 0.01	i : 0.01	^ : 0.01	
f : 0.42	d : 0.17	c : 0.15	b : 0.07	h : 0.05	e : 0.05	g : 0.03	i : 0.01	^ : 0.01	
f : 0.42	d : 0.17	c : 0.15	b : 0.07	h : 0.05	e : 0.05	g : 0.03	i : 0.01	^ : 0.01	
^ : 0.35	v : 0.21	t : 0.07	w : 0.05	u : 0.05	x : 0.05	h : 0.05	y : 0.05	d : 0.03	f : 0.03	b : 0.01	c : 0.01	
^ : 0.35	v : 0.21	u : 0.14	t : 0.07	w : 0.05	x : 0.05	y : 0.05	f : 0.03	b : 0.01	c : 0.01	
^ : 0.35	v : 0.21	u : 0.14	t : 0.14	w : 0.05	x : 0.05	y : 0.05	
^ : 0.35	v : 0.21	u : 0.14	t : 0.14	w : 0.05	x : 0.05	y : 0.05	
^ : 0.35	v : 0.21	u : 0.14	t : 0.14	w : 0.05	x : 0.05	y : 0.05	
^ : 0.35	v : 0.21	u : 0.14	t : 0.14	w : 0.05	x : 0.05	y : 0.05	
^ : 0.35	v : 0.21	u : 0.14	t : 0.14	w : 0.05	x : 0.05	y : 0.05	
^ : 0.35	v : 0.21	u : 0.14	t : 0.14	w : 0.05	x : 0.05	y : 0.05	
^ : 0.35	v : 0.21	u : 0.14	t : 0.14	w : 0.05	x : 0.05	y : 0.05	
^ : 0.35	v : 0.21	u : 0.14	t : 0.14	w : 0.05	x : 0.05	y : 0.05	
^ : 0.35	v : 0.21	u : 0.14	t : 0.14	w : 0.05	x : 0.05	y : 0.05	
^ : 0.35	v : 0.21	u : 0.14	t : 0.07	w : 0.05	d : 0.05	x : 0.05	y : 0.05	c : 0.01	
^ : 0.35	v : 0.21	d : 0.08	u : 0.08	t : 0.07	w : 0.05	x : 0.05	y : 0.05	c : 0.03	
^ : 0.35	d : 0.15	f : 0.14	c : 0.07	w : 0.05	x : 0.05	h : 0.05	y : 0.05	b : 0.03	e : 0.03	

#score	1024.3160157086031
#seq	57
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF305BNZ_LARP7_UTR_m2_run2.txt

#BEAR
Cffffff[ccc!!eeeeemmmmeeeee]ccc333ffff	chr7:111928612-111928819(+)$1	207	73	111	32.3222
Cffffff[ccc!!eeeeemmmmeeeee]ccc333ffff	chr7:111928580-111928812(+)$1	232	105	143	32.3222
:ffffff[ccc!!eeeeemmmmeeeee]ccc333ffff	chr7:111928577-111928780(+)$1	203	108	146	32.0219
[ccc"""ccc[a[eeeeemmmmeeeee]a]ccc66666	chr2:54197784-54198048(-)$1	264	94	132	24.6068

#otherMatches

#Seq PSSM
gggcgaucuggcugugacaucugucaccccauuaaucg	chr7:111928612-111928819(+)$1	207	73	111	32.3222
gggcgaucuggcugugacaucugucaccccauuaaucg	chr7:111928580-111928812(+)$1	232	105	143	32.3222
gggcgaucuggcugugacaucugucaccccauuaaucg	chr7:111928577-111928780(+)$1	203	108	146	32.0219
gugggaggggguggggggggugUCCCUGGGCUCAUGGA	chr2:54197784-54198048(-)$1	264	94	132	24.6068

#DB
(((((((.(((..(((((....))))).)))...))))	chr7:111928612-111928819(+)$1	1	73	111	32.3222
(((((((.(((..(((((....))))).)))...))))	chr7:111928580-111928812(+)$1	1	105	143	32.3222
.((((((.(((..(((((....))))).)))...))))	chr7:111928577-111928780(+)$1	1	108	146	32.0219
.(((...(((.(.(((((....))))).).))).....	chr2:54197784-54198048(-)$1	1	94	132	24.6068

#PSSM
C : 0.50	: : 0.25	[ : 0.25	
f : 0.75	c : 0.25	
f : 0.75	c : 0.25	
f : 0.75	c : 0.25	
f : 0.75	" : 0.25	
f : 0.75	" : 0.25	
f : 0.75	" : 0.25	
[ : 0.75	c : 0.25	
c : 1.00	
c : 1.00	
c : 0.75	[ : 0.25	
! : 0.75	a : 0.25	
! : 0.75	[ : 0.25	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
] : 1.00	
c : 0.75	a : 0.25	
c : 0.75	] : 0.25	
c : 1.00	
3 : 0.75	c : 0.25	
3 : 0.75	c : 0.25	
3 : 0.75	6 : 0.25	
f : 0.75	6 : 0.25	
f : 0.75	6 : 0.25	
f : 0.75	6 : 0.25	
f : 0.75	6 : 0.25	

#score	121.27328411520003
#seq	4
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_transcript_m2_run1.txt

#BEAR
==========[ccclllccc=========	chr19:46285645-46285916(-)$1	271	218	247	13.3577
b[bb[ccc[a!!ammmma22a]ccc]bb]	chr1:27882533-27882814(-)$1	281	125	154	10.7375
""ccc[a"""cccmmmmccc22a]ccc]a	chr5:179921386-179921714(+)$1	328	286	315	12.5952
[ffffffggggggglllggggggg4444f	chr10:133794850-133795181(-)$1	331	86	115	10.2646
ff[aeeeee[cccmmmmccc]eeeee22a	chr6:86352069-86352283(-)$1	214	29	58	10.6738
===========oooooo===========B	chr5:132166043-132166369(-)$1	326	107	136	12.0970
ff!!iiiiiiiiimmmmiiiiiiiii000	chr2:61764247-61764509(-)$1	262	39	68	12.1963
iiiiiii[eeeeellleeeee]iiiiiii	chr8:121824465-121824721(-)$1	256	151	180	11.2516
!!bb!!ggggggglllggggggg333bbe	chr16:88563176-88563444(+)$1	268	126	155	10.5770
:ggggggg!!cccmmmmccc22ggggggg	chr11:705691-705940(-)$1	249	111	140	11.9132
[a####bb[ddddmmmmdddd]bb4444a	chrX:149108135-149108409(+)$1	274	228	257	10.5102
gggggg"""ddddmmmmdddd22gggggg	chr7:73020958-73021227(-)$1	269	34	63	11.7910
===========ccc333a]a]ggggggg]	chr1:12031242-12031543(+)$1	301	167	196	9.9525
[a"""eeeee!!ammmma22eeeee22a]	chr14:103574148-103574422(+)$1	274	90	119	10.8876
=========[ddddllldddd========	chr12:49761090-49761399(+)$1	309	177	206	12.1625
!!gggggggddddmmmmdddd22gggggg	chr17:70570249-70570530(-)$1	281	133	162	11.9027
bb[a[gggggggooooooggggggg]a]b	chr2:86259456-86259724(-)$1	268	143	172	10.7753
e!!cccgggggggmmmmggggggg22ccc	chr9:136553006-136553284(-)$1	278	70	99	12.1608
!!ccc[ggggggglllgggggggccc22c	chr1:2198891-2199147(+)$1	256	48	77	10.9654
####ffffffcccmmmmccc]ffffff44	chr22:21212433-21212732(-)$1	299	154	183	11.0259
hhhhhhgggggggmmmmggggggg4444h	chr17:55369732-55369992(+)$1	260	198	227	11.2510
!!a!!a[ffffffmmmmffffff]a22a2	chr17:63527849-63528103(-)$1	254	110	139	10.5024
e####gggggggammmma]gggggggeee	chr2:118853894-118854102(+)$1	208	135	164	12.3565
f[ffffff"""bbmmmmbb333ffffff]	chr6:28193070-28193389(+)$1	319	66	95	10.1307
ggggggg"""ccclllccc22ggggggg:	chr16:50630867-50631146(+)$1	279	1	30	10.5539
============oooooo===========	chr20:33593859-33594125(-)$1	266	128	157	13.2155
c####eeeee[bbmmmmbb]eeeee]ccc	chr8:124408111-124408449(-)$1	338	13	42	10.3085
gggggggccc[bbmmmmbb]ccc]ggggg	chr17:76124114-76124398(-)$1	284	94	123	11.1506
c[ccc[ddddcccmmmmccc]ddddccc]	chr7:6695635-6695986(+)$1	351	207	236	10.6399
==========[bbmmmmbb==========	chr9:96929137-96929406(+)$1	269	176	205	13.7815
###a[a[ggggggglllggggggg]a]aa	chr2:161278962-161279250(-)$1	288	117	146	11.4114
=============mmmm============	chr9:136667391-136667646(-)$1	255	222	251	14.9636
bb!!ccc[eeeeemmmmeeeee]cccbb2	chr13:113764717-113764992(+)$1	275	212	241	10.7085
ggg"""a[eeeeemmmmeeeee]a4444g	chr17:7232365-7232629(-)$1	264	9	38	12.1543
ggggggg"""ddddllldddd333ggggg	chr15:72767431-72767700(+)$1	269	114	143	11.0589
=============nnnnn===========	chr7:129710480-129710756(+)$1	276	241	270	12.3597
ggggggg[cccooooooccc333gggggg	chr15:44063534-44063792(+)$1	258	34	63	11.4390
:============mmmm============	chr10:134177764-134178081(+)$1	317	3	32	13.8570
ccc[ccc!!ddddmmmmdddd22ccc]cc	chr2:241567196-241567457(+)$1	261	150	179	11.0699
ff!!ccc[eeeeemmmmeeeee]ccc22f	chr7:2676335-2676571(+)$1	236	107	136	11.2919
ggggggg[eeeeemmmmeeeee22ggggg	chr1:16956811-16957091(-)$1	280	206	235	11.7829
fff===========lll===========:	chr9:136722223-136722524(-)$1	301	184	213	12.2806
b[a[a[a[ccc[ammmma]ccc]aa]a]b	chr7:65338711-65339079(+)$1	368	147	176	12.0070
ee[dddd"""cccmmmmccc4444dddd]	chr11:70963126-70963410(-)$1	284	181	210	10.5341
ffccc"""eeeeemmmmeeeee333ccc]	chr6:7910218-7910482(-)$1	264	183	212	11.5717
gggggg!!eeeeemmmmeeeeeggggggg	chr12:8025189-8025497(-)$1	308	105	134	12.0794
b!!dddd"""cccmmmmccc333ddddbb	chr7:102004312-102004591(+)$1	279	176	205	10.8968
a[ccc[ccc[cccmmmmccc]cccccc]a	chr1:1821610-1821847(-)$1	237	3	32	12.1699
fff"""gggggggmmmmgggggggfffff	chr17:80190706-80190952(+)$1	246	178	207	11.8350
=============nnnnn===========	chr1:39457340-39457576(+)$1	236	136	165	12.3597

#otherMatches

#Seq PSSM
CAGGGCCUGGACAGGGGCUGCCAGGCCCU	chr19:46285645-46285916(-)$1	271	218	247	13.3577
UGGGGCUGGGGACUCAAGGAUGUGGGCUG	chr1:27882533-27882814(-)$1	281	125	154	10.7375
GACUGGUAUGGUGGUUCCACAGGGCAGAC	chr5:179921386-179921714(+)$1	328	286	315	12.5952
GCCCGGGGCGUGGGGACCCCGCGUACUGC	chr10:133794850-133795181(-)$1	331	86	115	10.2646
GCGAGCGGCUUCAGAGUUGGUGCUGUCGU	chr6:86352069-86352283(-)$1	214	29	58	10.6738
GGGAAGCGGGCGGCUGGGUCCGCUUCCCC	chr5:132166043-132166369(-)$1	326	107	136	12.0970
CUGGGUCAUUCGCGUGUGCGGGUGGCGGU	chr2:61764247-61764509(-)$1	262	39	68	12.1963
GUCCCCGCGGCGUCGUGCGCUCUGGGGAC	chr8:121824465-121824721(-)$1	256	151	180	11.2516
cagcaaggugagguggcuucgccacagcg	chr16:88563176-88563444(+)$1	268	126	155	10.5770
ACGCUGCCAAUGGGACUUCGGGGGCAGCG	chr11:705691-705940(-)$1	249	111	140	11.9132
GGAGGAAAGAGCUGAAAGGUUGUUGGGGU	chrX:149108135-149108409(+)$1	274	228	257	10.5102
GGGUGGAAUGUGGGAUGUUACUGCCAUCC	chr7:73020958-73021227(-)$1	269	34	63	11.7910
UUUGGUCCCCAGGCAGGAGUGAGGUCUCA	chr1:12031242-12031543(+)$1	301	167	196	9.9525
GUGGAACAGGGACUGGGGCGCCUGUGGGG	chr14:103574148-103574422(+)$1	274	90	119	10.8876
AAGGGGAGGUGGAGGAUCUCCUUUCCUCU	chr12:49761090-49761399(+)$1	309	177	206	12.1625
GAGAUGGGUGGUGGUGACACUAGACUUAU	chr17:70570249-70570530(-)$1	281	133	162	11.9027
ugguggguggauggauggauUCACUGAGC	chr2:86259456-86259724(-)$1	268	143	172	10.7753
UGGACAGGGAGUGGGGAUAUUUUUAGUGU	chr9:136553006-136553284(-)$1	278	70	99	12.1608
GAGCCUCCUUUCAGGGUGGAAGGGGUGGU	chr1:2198891-2199147(+)$1	256	48	77	10.9654
GGAGCAUCUUGUGACAUCGCGGAGGUGGA	chr22:21212433-21212732(-)$1	299	154	183	11.0259
gagguugguggggggucccucaccugugg	chr17:55369732-55369992(+)$1	260	198	227	11.2510
GGGAUGCGUUGAGUAAUCUCAACAUGGCA	chr17:63527849-63528103(-)$1	254	110	139	10.5024
GUACCGUUGAAGCGUCAGUCUUUGAUUCA	chr2:118853894-118854102(+)$1	208	135	164	12.3565
CGGGUCUCGUGAGUUGGCUGUGGGGACCG	chr6:28193070-28193389(+)$1	319	66	95	10.1307
cgccuguguggcugugggcgagcggguga	chr16:50630867-50631146(+)$1	279	1	30	10.5539
GCGCCUGCCGUGACGCAGCAUGGUGGGUG	chr20:33593859-33594125(-)$1	266	128	157	13.2155
CAAAGCGGGCGUGAGUACGGGCCUGAGGC	chr8:124408111-124408449(-)$1	338	13	42	10.3085
GGUAGCGGCUGCUCCCGGGAAGCUCGCUG	chr17:76124114-76124398(-)$1	284	94	123	11.1506
UGGGGUGCUGGGUAAUGACCUCGGCCCUG	chr7:6695635-6695986(+)$1	351	207	236	10.6399
CUGCUGCGGCUGGAGGUCCGCUGCGGCAG	chr9:96929137-96929406(+)$1	269	176	205	13.7815
gggugggugcugguggugcuagugguggu	chr2:161278962-161279250(-)$1	288	117	146	11.4114
ugugcacaugcaugugugugugugugcau	chr9:136667391-136667646(-)$1	255	222	251	14.9636
GUGGGCCGUGGGGCGGUCUCCGAGGCACU	chr13:113764717-113764992(+)$1	275	212	241	10.7085
gucgggugggagugggggcucugggggag	chr17:7232365-7232629(-)$1	264	9	38	12.1543
UGGGGAGGUGCGCUGGGGGCGGUGCUUCC	chr15:72767431-72767700(+)$1	269	114	143	11.0589
CUUGCUUUUCCUUGGGAGGAGGAAAGGCA	chr7:129710480-129710756(+)$1	276	241	270	12.3597
UGUUUCUUAGCUGCACUGUUUAUGGAAAU	chr15:44063534-44063792(+)$1	258	34	63	11.4390
UGUGUGCCAUUGUAUUCACAGUGGCGCAU	chr10:134177764-134178081(+)$1	317	3	32	13.8570
GGGUCCUCACCUCCCACGAGGCAGGGUCC	chr2:241567196-241567457(+)$1	261	150	179	11.0699
GGGUGUCAGGCCACCCUUGGCCCGGCCGC	chr7:2676335-2676571(+)$1	236	107	136	11.2919
UCCCGGGGGCUUUGAUAGGAGUUGUCCGG	chr1:16956811-16957091(-)$1	280	206	235	11.7829
CCUCCAGAUUGGGGGUGCCCUAAUUUGGG	chr9:136722223-136722524(-)$1	301	184	213	12.2806
ugugcaggagcgcgagggggcugcggagg	chr7:65338711-65339079(+)$1	368	147	176	12.0070
CCCGGGCAGGGGCCGGUGUCGAAAGCUUU	chr11:70963126-70963410(-)$1	284	181	210	10.5341
CUCUUGCACCUCGGCACCGAGGGAGGGGA	chr6:7910218-7910482(-)$1	264	183	212	11.5717
CGCGCCGUCCCUGCGGCCGGGGGGUGCGG	chr12:8025189-8025497(-)$1	308	105	134	12.0794
GCCGGGUAGAGGCUCGAGCCGGGACCCCC	chr7:102004312-102004591(+)$1	279	176	205	10.8968
cggugucggcggccggagcccccgcgcgg	chr1:1821610-1821847(-)$1	237	3	32	12.1699
AGGCAGGACAGCCCCAGGGUUGUCCCUGG	chr17:80190706-80190952(+)$1	246	178	207	11.8350
UUUAGGUUUUCCUGGGGGAGGAGAGCCUG	chr1:39457340-39457576(+)$1	236	136	165	12.3597

#DB
((((((((((.(((...))))))))))))	chr19:46285645-46285916(-)$1	1	218	247	13.3577
(.((.(((.(..(....)..).))).)).	chr1:27882533-27882814(-)$1	1	125	154	10.7375
..(((.(...(((....)))..).))).)	chr5:179921386-179921714(+)$1	1	286	315	12.5952
.(((((((((((((...)))))))....)	chr10:133794850-133795181(-)$1	1	86	115	10.2646
((.((((((.(((....))).)))))..)	chr6:86352069-86352283(-)$1	1	29	58	10.6738
(((((((((((......))))))))))))	chr5:132166043-132166369(-)$1	1	107	136	12.0970
((..(((((((((....)))))))))...	chr2:61764247-61764509(-)$1	1	39	68	12.1963
(((((((.(((((...))))).)))))))	chr8:121824465-121824721(-)$1	1	151	180	11.2516
..((..(((((((...)))))))...)))	chr16:88563176-88563444(+)$1	1	126	155	10.5770
.(((((((..(((....)))..)))))))	chr11:705691-705940(-)$1	1	111	140	11.9132
.(....((.((((....)))).))....)	chrX:149108135-149108409(+)$1	1	228	257	10.5102
((((((...((((....))))..))))))	chr7:73020958-73021227(-)$1	1	34	63	11.7910
))))))))))))))...).).))))))).	chr1:12031242-12031543(+)$1	1	167	196	9.9525
.(...(((((..(....)..)))))..).	chr14:103574148-103574422(+)$1	1	90	119	10.8876
(((((((((.((((...))))))))))))	chr12:49761090-49761399(+)$1	1	177	206	12.1625
..(((((((((((....))))..))))))	chr17:70570249-70570530(-)$1	1	133	162	11.9027
((.(.(((((((......))))))).).)	chr2:86259456-86259724(-)$1	1	143	172	10.7753
(..((((((((((....)))))))..)))	chr9:136553006-136553284(-)$1	1	70	99	12.1608
..(((.(((((((...))))))))))..)	chr1:2198891-2199147(+)$1	1	48	77	10.9654
....(((((((((....))).))))))..	chr22:21212433-21212732(-)$1	1	154	183	11.0259
(((((((((((((....)))))))....)	chr17:55369732-55369992(+)$1	1	198	227	11.2510
..(..(.((((((....)))))).)..).	chr17:63527849-63528103(-)$1	1	110	139	10.5024
(....((((((((....).))))))))))	chr2:118853894-118854102(+)$1	1	135	164	12.3565
(.((((((...((....))...)))))).	chr6:28193070-28193389(+)$1	1	66	95	10.1307
(((((((...(((...)))..))))))).	chr16:50630867-50631146(+)$1	1	1	30	10.5539
((((((((((((......)))))))))))	chr20:33593859-33594125(-)$1	1	128	157	13.2155
(....(((((.((....)).))))).)))	chr8:124408111-124408449(-)$1	1	13	42	10.3085
((((((((((.((....)).))).)))))	chr17:76124114-76124398(-)$1	1	94	123	11.1506
(.(((.(((((((....))).))))))).	chr7:6695635-6695986(+)$1	1	207	236	10.6399
((((((((((.((....))))))))))))	chr9:96929137-96929406(+)$1	1	176	205	13.7815
...(.(.(((((((...))))))).).))	chr2:161278962-161279250(-)$1	1	117	146	11.4114
(((((((((((((....))))))))))))	chr9:136667391-136667646(-)$1	1	222	251	14.9636
((..(((.(((((....))))).))))).	chr13:113764717-113764992(+)$1	1	212	241	10.7085
(((...(.(((((....))))).)....)	chr17:7232365-7232629(-)$1	1	9	38	12.1543
(((((((...((((...))))...)))))	chr15:72767431-72767700(+)$1	1	114	143	11.0589
(((((((((((((.....)))))))))))	chr7:129710480-129710756(+)$1	1	241	270	12.3597
(((((((.(((......)))...))))))	chr15:44063534-44063792(+)$1	1	34	63	11.4390
.((((((((((((....))))))))))))	chr10:134177764-134178081(+)$1	1	3	32	13.8570
(((.(((..((((....))))..))).))	chr2:241567196-241567457(+)$1	1	150	179	11.0699
((..(((.(((((....))))).)))..)	chr7:2676335-2676571(+)$1	1	107	136	11.2919
(((((((.(((((....)))))..)))))	chr1:16956811-16957091(-)$1	1	206	235	11.7829
)))(((((((((((...))))))))))).	chr9:136722223-136722524(-)$1	1	184	213	12.2806
(.(.(.(.(((.(....).))).)).).)	chr7:65338711-65339079(+)$1	1	147	176	12.0070
((.((((...(((....)))....)))).	chr11:70963126-70963410(-)$1	1	181	210	10.5341
(((((...(((((....)))))...))).	chr6:7910218-7910482(-)$1	1	183	212	11.5717
((((((..(((((....))))))))))))	chr12:8025189-8025497(-)$1	1	105	134	12.0794
(..((((...(((....)))...))))))	chr7:102004312-102004591(+)$1	1	176	205	10.8968
(.(((.(((.(((....))).)))))).)	chr1:1821610-1821847(-)$1	1	3	32	12.1699
(((...(((((((....))))))))))))	chr17:80190706-80190952(+)$1	1	178	207	11.8350
(((((((((((((.....)))))))))))	chr1:39457340-39457576(+)$1	1	136	165	12.3597

#PSSM
= : 0.18	g : 0.16	f : 0.14	b : 0.10	! : 0.08	[ : 0.06	e : 0.06	c : 0.06	: : 0.04	# : 0.04	" : 0.02	i : 0.02	h : 0.02	a : 0.02	
= : 0.19	g : 0.18	f : 0.14	! : 0.12	[ : 0.10	# : 0.08	a : 0.04	b : 0.04	" : 0.02	i : 0.02	h : 0.02	c : 0.02	e : 0.02	
= : 0.19	g : 0.19	c : 0.12	! : 0.10	# : 0.10	f : 0.08	[ : 0.06	b : 0.04	a : 0.04	i : 0.02	" : 0.02	h : 0.02	
= : 0.21	g : 0.18	c : 0.12	! : 0.08	# : 0.08	a : 0.06	" : 0.06	b : 0.04	f : 0.04	[ : 0.04	d : 0.04	i : 0.02	h : 0.02	
= : 0.21	c : 0.18	g : 0.18	[ : 0.06	f : 0.06	# : 0.06	" : 0.06	i : 0.04	! : 0.04	d : 0.04	e : 0.02	h : 0.02	a : 0.02	
= : 0.21	g : 0.21	c : 0.10	[ : 0.10	f : 0.06	e : 0.06	" : 0.06	i : 0.04	a : 0.04	d : 0.04	! : 0.02	# : 0.02	h : 0.02	
g : 0.27	= : 0.21	c : 0.10	a : 0.06	f : 0.06	e : 0.06	d : 0.06	i : 0.04	" : 0.04	[ : 0.04	b : 0.02	! : 0.02	
= : 0.21	g : 0.21	" : 0.14	[ : 0.14	c : 0.06	e : 0.06	f : 0.06	! : 0.04	i : 0.02	b : 0.02	d : 0.02	
= : 0.21	g : 0.19	e : 0.19	" : 0.14	c : 0.08	[ : 0.04	! : 0.04	f : 0.04	i : 0.02	d : 0.02	
= : 0.19	g : 0.18	e : 0.18	" : 0.12	d : 0.10	[ : 0.06	c : 0.06	f : 0.04	a : 0.02	i : 0.02	! : 0.02	
c : 0.21	g : 0.18	= : 0.16	e : 0.14	d : 0.12	[ : 0.08	! : 0.04	i : 0.02	f : 0.02	" : 0.02	
c : 0.21	g : 0.18	e : 0.14	d : 0.12	= : 0.12	b : 0.08	! : 0.04	o : 0.04	i : 0.02	f : 0.02	[ : 0.02	
c : 0.21	g : 0.14	e : 0.14	d : 0.12	= : 0.10	a : 0.08	o : 0.08	b : 0.08	i : 0.02	f : 0.02	
m : 0.66	o : 0.08	l : 0.08	c : 0.04	g : 0.04	d : 0.04	n : 0.04	= : 0.02	
m : 0.66	l : 0.19	o : 0.08	n : 0.04	3 : 0.02	
m : 0.66	l : 0.19	o : 0.08	n : 0.04	3 : 0.02	
m : 0.66	l : 0.12	o : 0.08	g : 0.04	n : 0.04	e : 0.02	3 : 0.02	c : 0.02	
c : 0.21	g : 0.14	e : 0.14	d : 0.12	a : 0.10	= : 0.08	b : 0.08	o : 0.04	n : 0.04	i : 0.02	f : 0.02	
c : 0.21	g : 0.16	= : 0.14	e : 0.14	d : 0.12	b : 0.08	] : 0.06	2 : 0.04	i : 0.02	f : 0.02	
c : 0.21	g : 0.18	= : 0.16	e : 0.14	d : 0.12	2 : 0.06	] : 0.04	i : 0.02	a : 0.02	f : 0.02	3 : 0.02	
= : 0.18	g : 0.18	e : 0.18	d : 0.12	] : 0.10	2 : 0.06	3 : 0.06	c : 0.04	a : 0.02	i : 0.02	f : 0.02	4 : 0.02	
g : 0.21	= : 0.19	e : 0.18	2 : 0.10	3 : 0.08	] : 0.06	c : 0.06	f : 0.04	i : 0.02	d : 0.02	4 : 0.02	
g : 0.25	= : 0.19	2 : 0.08	] : 0.08	3 : 0.08	c : 0.06	e : 0.06	f : 0.06	i : 0.04	a : 0.02	b : 0.02	d : 0.02	4 : 0.02	
g : 0.27	= : 0.19	c : 0.12	] : 0.06	e : 0.06	3 : 0.06	i : 0.04	f : 0.04	d : 0.04	a : 0.04	b : 0.02	2 : 0.02	4 : 0.02	
g : 0.23	= : 0.19	c : 0.14	4 : 0.08	e : 0.06	f : 0.06	d : 0.06	i : 0.04	3 : 0.04	a : 0.04	2 : 0.02	] : 0.02	
g : 0.21	= : 0.19	c : 0.16	] : 0.08	4 : 0.08	2 : 0.06	f : 0.06	i : 0.04	d : 0.04	e : 0.02	3 : 0.02	a : 0.02	
= : 0.19	g : 0.19	c : 0.12	2 : 0.10	4 : 0.08	b : 0.06	f : 0.06	a : 0.04	] : 0.04	d : 0.04	0 : 0.02	i : 0.02	e : 0.02	
= : 0.19	g : 0.19	4 : 0.10	c : 0.10	b : 0.08	] : 0.08	2 : 0.06	a : 0.06	f : 0.04	0 : 0.02	i : 0.02	e : 0.02	d : 0.02	
g : 0.18	= : 0.16	] : 0.14	a : 0.10	c : 0.08	f : 0.06	b : 0.06	e : 0.04	2 : 0.04	: : 0.04	B : 0.02	0 : 0.02	i : 0.02	4 : 0.02	h : 0.02	

#score	579.5216849611603
#seq	50
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_transcript_m3_run2.txt

#BEAR
!!ccc!!cccmmmmccc4444ccc2	chr2:10335641-10335889(+)$1	248	118	143	12.1803
ggggggg[ccclllccc]ggggggg	chr11:65194773-65195001(+)$1	228	144	169	11.4443
dd"""ccc[ammmma]ccc4444dd	chr17:70479458-70479704(-)$1	246	108	133	10.0408
b[dddd[cccmmmmcccdddd]bb2	chr3:48469721-48469937(-)$1	216	25	50	9.9165
gg[a!!ddddmmmmdddd22a]ggg	chr20:60624532-60624801(-)$1	269	215	240	9.9591
ggggggg[ccclllccc]ggggggg	chr16:81515116-81515346(+)$1	230	43	68	11.4443
"""ccc!!ccclllccc22cccggg	chr11:65202944-65203152(+)$1	208	23	48	11.0400
""ccc[ddddmmmmddddcccdddd	chr1:2222743-2223000(+)$1	257	161	186	8.7335
!a[gggggggmmmmggggggg22a3	chr16:20686594-20686902(+)$1	308	142	167	10.6841
!iiiiiiiiimmmmiiiiiiiiicc	chr6:7108016-7108272(+)$1	256	134	159	11.1206
ggg"""ddddmmmmdddd]gggggg	chr16:31198638-31198902(+)$1	264	223	248	9.7901
b[bb[bbcccmmmmccc]bb]bb]b	chr19:879193-879456(-)$1	263	55	80	9.5743
cc[a!!cccooooooccc22a]ccc	chr11:65194249-65194474(+)$1	225	1	26	9.6808
[dddd!!cccmmmmccc]ddddeee	chr11:65203351-65203602(+)$1	251	222	247	11.1247
eeeee"""bbmmmmbb]eeeee]cc	chr8:97506952-97507178(+)$1	226	141	166	8.7171
ggggggg[bbmmmmbb]ggggggg:	chr17:70484061-70484328(-)$1	267	17	42	9.4627
Gcccccccccmmmmccc]ccc4444	chr17:75452198-75452470(+)$1	272	144	169	11.4109
===========lll===========	chr20:57467353-57467621(+)$1	268	167	192	10.6205
a[bbccc[ccclllccc]ccc]bb2	chr9:137229853-137230106(+)$1	253	47	72	9.9005
ggggggg[ccclllccc]ggggggg	chr11:65194801-65195051(+)$1	250	116	141	11.4443
dddgggggggmmmmggggggg333d	chr11:65194031-65194247(+)$1	216	133	158	10.3531
ceeeee!!ccclllccc]eeeee>>	chr2:71580572-71580823(+)$1	251	117	142	9.0945
==========lll==========]a	chr1:974177-974441(+)$1	264	105	130	10.2256
ddd!!ccc[aooooooa]ccc22dd	chr11:65197479-65197694(+)$1	215	2	27	8.5040
!!dddd[cccmmmmcccdddd]eee	chr14:54421341-54421614(-)$1	273	9	34	10.7010
c!!ddddcccmmmmccc]dddd]cc	chr22:47207292-47207568(+)$1	276	179	204	11.1728
ff[a"""cccmmmmccc333a]fff	chr7:79081759-79082013(-)$1	254	100	125	12.3643
"dddd!!cccmmmmccc]dddd]ad	chr2:240315122-240315375(-)$1	253	204	229	11.3720
hhh!!a[cccmmmmccc]a22hhhh	chr11:70449331-70449623(-)$1	292	188	213	11.4243
ggggggg[ccclllccc]ggggggg	chr11:65194883-65195107(+)$1	224	34	59	11.4443
cc!!cccbboooooobb]ccc22cc	chr11:65194692-65194904(+)$1	212	44	69	8.4263
cc!!ccc[bbmmmmbb]ccc22ccc	chr8:62606444-62606694(-)$1	250	204	229	10.1716
hhhhh!!cccmmmmccc22hhhhhh	chr11:65194663-65194883(+)$1	220	25	50	10.7943
ee[ccc[ccclllccc22ccceeee	chr7:101472880-101473140(+)$1	260	22	47	9.3650
ccc[bb[cccmmmmccc]bb]ccc]	chr2:242661348-242661618(+)$1	270	127	152	11.6764
==========mmmm==========c	chr10:121340945-121341210(-)$1	265	151	176	11.5575
:cccbb[cccmmmmccc]bb]cccb	chr20:61273942-61274236(+)$1	294	89	114	10.2895
[a[dddd[ccclllcccdddd]a]e	chr9:136796417-136796698(-)$1	281	158	183	9.4523
[ccc[bbcccmmmmccc]bb]ccc]	chr13:113380630-113380881(+)$1	251	77	102	11.3615
ggggggg[bbmmmmbb333gggggg	chr9:137250992-137251251(+)$1	259	85	110	11.0273
ccc[a!!cccmmmmccc22accc::	chr10:80924750-80924996(+)$1	246	199	224	10.2700
dddgggggggmmmmggggggg333d	chr11:65194023-65194231(+)$1	208	141	166	10.3531
ggggg"""ccclllccc333ggggg	chr19:39140342-39140593(+)$1	251	43	68	11.6457
ff[a!!a[bbmmmmbb]a22a]fff	chr17:75325028-75325291(+)$1	263	97	122	9.7688
dd[ccc[cccmmmmccc]ccc]ddd	chr11:65194337-65194579(+)$1	242	193	218	12.0869
gg!!bb[cccmmmmccc]bb22ggg	chr3:113464003-113464275(-)$1	272	146	171	12.0341
ddd[bb[cccmmmmccc]bb]dddd	chr14:100052942-100053249(-)$1	307	42	67	10.6928
ccc####cccmmmmcccccc333hh	chr11:65203078-65203318(+)$1	240	68	93	12.0218
ggggggg[ccclllccc22gggggg	chr6:37799940-37800228(+)$1	288	186	211	11.1185
ff[bb[cccammmma]ccc]bb]ff	chr11:782550-782879(+)$1	329	195	220	9.3755
gggggggcccmmmmccc]ggggggg	chr16:81526381-81526637(+)$1	256	187	212	12.5749
""a[ffffffmmmmffffffa333f	chr15:25267793-25268028(+)$1	235	145	170	9.0022

#otherMatches

#Seq PSSM
GAGCCUCGGGUGGACCCAUGUGGCA	chr2:10335641-10335889(+)$1	248	118	143	12.1803
UGCAGGGCUGGUUGCCGUCCUUGCA	chr11:65194773-65195001(+)$1	228	144	169	11.4443
GAAAAGCUGGGUAAUGAGUGGGAUC	chr17:70479458-70479704(-)$1	246	108	133	10.0408
AGCUCCACGGGGGUCCGGGAGGUGC	chr3:48469721-48469937(-)$1	216	25	50	9.9165
AGGCAGUGGGGACCCCUGAAGGCUG	chr20:60624532-60624801(-)$1	269	215	240	9.9591
GAGCGGCUCCCAGAGGGUGCUGUUU	chr16:81515116-81515346(+)$1	230	43	68	11.4443
uugagguuauuugcaguuuccuagc	chr11:65202944-65203152(+)$1	208	23	48	11.0400
GCCCAUGGCAGCACUGCCUGGCCAU	chr1:2222743-2223000(+)$1	257	161	186	8.7335
acagcugcagcagucuguggcaggg	chr16:20686594-20686902(+)$1	308	142	167	10.6841
CUGCGGAGUUGAUGAACUUUGCACA	chr6:7108016-7108272(+)$1	256	134	159	11.1206
AGUCUCCCAGUAAGCUGGAACUUUU	chr16:31198638-31198902(+)$1	264	223	248	9.7901
GGUGAGCUGCUGGGGCAUGUGCGGC	chr19:879193-879456(-)$1	263	55	80	9.5743
ACUCAAGCCAAUGAAGGUGGGUGUG	chr11:65194249-65194474(+)$1	225	1	26	9.6808
GAGCUCAGGUGUGAGCCCGGCUCUG	chr11:65203351-65203602(+)$1	251	222	247	11.1247
AAAAGUUUGCAAAAGUUCUUUUGUU	chr8:97506952-97507178(+)$1	226	141	166	8.7171
ACUGGCGGUGGAGGUGGCGCCGGUG	chr17:70484061-70484328(-)$1	267	17	42	9.4627
AGCAGGGGGUCUCAGCCACCCAGGG	chr17:75452198-75452470(+)$1	272	144	169	11.4109
GGGGGGCUGGUGACAUCAGCCCCUC	chr20:57467353-57467621(+)$1	268	167	192	10.6205
GAUGGGCGGUCAGCGGCAGCCACAG	chr9:137229853-137230106(+)$1	253	47	72	9.9005
UGCAGGGCUGGUUGCCGUCCUUGCA	chr11:65194801-65195051(+)$1	250	116	141	11.4443
CCAAGUGGUCUGCAGACUGCUGAGU	chr11:65194031-65194247(+)$1	216	133	158	10.3531
UUUACUGAGCUUAaagcaaguaaug	chr2:71580572-71580823(+)$1	251	117	142	9.0945
UGGUUUGAGUUUGAUUUGAGCCAGG	chr1:974177-974441(+)$1	264	105	130	10.2256
CCAUUUCCCCAUCUGAGuggauuug	chr11:65197479-65197694(+)$1	215	2	27	8.5040
GGCAGGCAACCCGAGUUCUUGAGCU	chr14:54421341-54421614(-)$1	273	9	34	10.7010
CAACGGUCACAACGGUGUAUCGAGC	chr22:47207292-47207568(+)$1	276	179	204	11.1728
CAGCGGGUCUGGGAAGAGAAGGUGG	chr7:79081759-79082013(-)$1	254	100	125	12.3643
GAGCCGGGCCAACUGGCAGGCUGCC	chr2:240315122-240315375(-)$1	253	204	229	11.3720
GGUGUUGGUCUCAGGACGGCAGCCA	chr11:70449331-70449623(-)$1	292	188	213	11.4243
UGCAGGGCUGGUUGCCGUCCUUGCA	chr11:65194883-65195107(+)$1	224	34	59	11.4443
CCAGCCUCUGUGCUGAGAAGGAAGG	chr11:65194692-65194904(+)$1	212	44	69	8.4263
ggcgggggauacuuguguucaccca	chr8:62606444-62606694(-)$1	250	204	229	10.1716
GGUUUUGCUUACAGGAGACAAACUU	chr11:65194663-65194883(+)$1	220	25	50	10.7943
CAAGAUGAGCUUGGCUGGGUCUGGG	chr7:101472880-101473140(+)$1	260	22	47	9.3650
CUGGUUGAGUCAGUAUUGGGGCAGA	chr2:242661348-242661618(+)$1	270	127	152	11.6764
UGUAAGAGUUCAAUAACUUUUAUAG	chr10:121340945-121341210(-)$1	265	151	176	11.5575
AGGCCUGGGCACCGGCCGAGCGCCC	chr20:61273942-61274236(+)$1	294	89	114	10.2895
CUGCAGGAGGGGGGCCCCCUGGGCG	chr9:136796417-136796698(-)$1	281	158	183	9.4523
GAGAGGGGCCAUGGGGCACCAUCUG	chr13:113380630-113380881(+)$1	251	77	102	11.3615
GAGGCAGAGCCAGGGCCACCUGCCU	chr9:137250992-137251251(+)$1	259	85	110	11.0273
GCCACGAUCCUUCAGGAGAGGGCAG	chr10:80924750-80924996(+)$1	246	199	224	10.2700
CCAAGUGGUCUGCAGACUGCUGAGU	chr11:65194023-65194231(+)$1	208	141	166	10.3531
CUUGGCACAGGCAGCCUAGCCCAGG	chr19:39140342-39140593(+)$1	251	43	68	11.6457
cuggaguguguuuucagagacgggc	chr17:75325028-75325291(+)$1	263	97	122	9.7688
GUGUGCGUGCUACAGUAAGCAAGCA	chr11:65194337-65194579(+)$1	242	193	218	12.0869
CCCUGAGUGCUGAGGCGGUCCUGGG	chr3:113464003-113464275(-)$1	272	146	171	12.0341
GGGUGUGCUAUAGGUAGGGCUUUCC	chr14:100052942-100053249(-)$1	307	42	67	10.6928
GGUUGAAAGCACGUGCUGCCAAAAU	chr11:65203078-65203318(+)$1	240	68	93	12.0218
GUGGGUGUAGAAGUUCUUUCACUUA	chr6:37799940-37800228(+)$1	288	186	211	11.1185
UGGGAGUCCCGGGAGAGGAGUCGCA	chr11:782550-782879(+)$1	329	195	220	9.3755
GAUGCCCCUUUAGUAGGAGGGCAUU	chr16:81526381-81526637(+)$1	256	187	212	12.5749
AUGCAGUUGGUCUCCUAAUucuaca	chr15:25267793-25268028(+)$1	235	145	170	9.0022

#DB
..(((..(((....)))....))).	chr2:10335641-10335889(+)$1	1	118	143	12.1803
(((((((.(((...))).)))))))	chr11:65194773-65195001(+)$1	1	144	169	11.4443
((...(((.(....).)))....))	chr17:70479458-70479704(-)$1	1	108	133	10.0408
(.((((.(((....))))))).)).	chr3:48469721-48469937(-)$1	1	25	50	9.9165
((.(..((((....))))..).)))	chr20:60624532-60624801(-)$1	1	215	240	9.9591
(((((((.(((...))).)))))))	chr16:81515116-81515346(+)$1	1	43	68	11.4443
...(((..(((...)))..))))))	chr11:65202944-65203152(+)$1	1	23	48	11.0400
..(((.((((....)))))))))))	chr1:2222743-2223000(+)$1	1	161	186	8.7335
.(.(((((((....)))))))..).	chr16:20686594-20686902(+)$1	1	142	167	10.6841
.(((((((((....)))))))))))	chr6:7108016-7108272(+)$1	1	134	159	11.1206
(((...((((....)))).))))))	chr16:31198638-31198902(+)$1	1	223	248	9.7901
(.((.(((((....))).)).)).)	chr19:879193-879456(-)$1	1	55	80	9.5743
((.(..(((......)))..).)))	chr11:65194249-65194474(+)$1	1	1	26	9.6808
.((((..(((....))).)))))))	chr11:65203351-65203602(+)$1	1	222	247	11.1247
(((((...((....)).))))).))	chr8:97506952-97507178(+)$1	1	141	166	8.7171
(((((((.((....)).))))))).	chr17:70484061-70484328(-)$1	1	17	42	9.4627
((((((((((....))).)))....	chr17:75452198-75452470(+)$1	1	144	169	11.4109
(((((((((((...)))))))))))	chr20:57467353-57467621(+)$1	1	167	192	10.6205
(.(((((.(((...))).))).)).	chr9:137229853-137230106(+)$1	1	47	72	9.9005
(((((((.(((...))).)))))))	chr11:65194801-65195051(+)$1	1	116	141	11.4443
((((((((((....)))))))...)	chr11:65194031-65194247(+)$1	1	133	158	10.3531
((((((..(((...))).)))))..	chr2:71580572-71580823(+)$1	1	117	142	9.0945
((((((((((...)))))))))).)	chr1:974177-974441(+)$1	1	105	130	10.2256
(((..(((.(......).)))..))	chr11:65197479-65197694(+)$1	1	2	27	8.5040
..((((.(((....))))))).)))	chr14:54421341-54421614(-)$1	1	9	34	10.7010
(..(((((((....))).)))).))	chr22:47207292-47207568(+)$1	1	179	204	11.1728
((.(...(((....)))...).)))	chr7:79081759-79082013(-)$1	1	100	125	12.3643
.((((..(((....))).)))).))	chr2:240315122-240315375(-)$1	1	204	229	11.3720
(((..(.(((....))).)..))))	chr11:70449331-70449623(-)$1	1	188	213	11.4243
(((((((.(((...))).)))))))	chr11:65194883-65195107(+)$1	1	34	59	11.4443
((..(((((......)).)))..))	chr11:65194692-65194904(+)$1	1	44	69	8.4263
((..(((.((....)).)))..)))	chr8:62606444-62606694(-)$1	1	204	229	10.1716
(((((..(((....)))..))))))	chr11:65194663-65194883(+)$1	1	25	50	10.7943
((.(((.(((...)))..)))))))	chr7:101472880-101473140(+)$1	1	22	47	9.3650
(((.((.(((....))).)).))).	chr2:242661348-242661618(+)$1	1	127	152	11.6764
((((((((((....)))))))))))	chr10:121340945-121341210(-)$1	1	151	176	11.5575
.(((((.(((....))).)).)))(	chr20:61273942-61274236(+)$1	1	89	114	10.2895
.(.((((.(((...))))))).).)	chr9:136796417-136796698(-)$1	1	158	183	9.4523
.(((.(((((....))).)).))).	chr13:113380630-113380881(+)$1	1	77	102	11.3615
(((((((.((....))...))))))	chr9:137250992-137251251(+)$1	1	85	110	11.0273
(((.(..(((....)))..))))..	chr10:80924750-80924996(+)$1	1	199	224	10.2700
((((((((((....)))))))...)	chr11:65194023-65194231(+)$1	1	141	166	10.3531
(((((...(((...)))...)))))	chr19:39140342-39140593(+)$1	1	43	68	11.6457
((.(..(.((....)).)..).)))	chr17:75325028-75325291(+)$1	1	97	122	9.7688
((.(((.(((....))).))).)))	chr11:65194337-65194579(+)$1	1	193	218	12.0869
((..((.(((....))).))..)))	chr3:113464003-113464275(-)$1	1	146	171	12.0341
(((.((.(((....))).)).))))	chr14:100052942-100053249(-)$1	1	42	67	10.6928
(((....(((....))))))...))	chr11:65203078-65203318(+)$1	1	68	93	12.0218
(((((((.(((...)))..))))))	chr6:37799940-37800228(+)$1	1	186	211	11.1185
((.((.((((....).))).)).))	chr11:782550-782879(+)$1	1	195	220	9.3755
((((((((((....))).)))))))	chr16:81526381-81526637(+)$1	1	187	212	12.5749
..(.((((((....)))))))...)	chr15:25267793-25268028(+)$1	1	145	170	9.0022

#PSSM
g : 0.23	c : 0.15	d : 0.11	! : 0.07	" : 0.07	[ : 0.05	= : 0.05	f : 0.05	b : 0.03	e : 0.03	h : 0.03	G : 0.01	a : 0.01	: : 0.01	
g : 0.23	c : 0.17	d : 0.15	! : 0.05	[ : 0.05	" : 0.05	e : 0.05	= : 0.05	f : 0.05	a : 0.03	h : 0.03	i : 0.01	
g : 0.19	[ : 0.17	c : 0.15	d : 0.15	! : 0.07	= : 0.05	" : 0.03	b : 0.03	e : 0.03	h : 0.03	i : 0.01	a : 0.01	
g : 0.23	c : 0.15	d : 0.11	! : 0.09	a : 0.07	[ : 0.07	b : 0.05	= : 0.05	" : 0.03	e : 0.03	i : 0.01	h : 0.01	# : 0.01	
g : 0.23	c : 0.17	d : 0.11	! : 0.09	b : 0.09	" : 0.05	= : 0.05	[ : 0.03	e : 0.03	i : 0.01	h : 0.01	a : 0.01	# : 0.01	f : 0.01	
g : 0.21	c : 0.17	! : 0.15	b : 0.11	d : 0.07	" : 0.07	= : 0.05	[ : 0.03	i : 0.01	e : 0.01	a : 0.01	# : 0.01	f : 0.01	
g : 0.21	[ : 0.17	c : 0.15	! : 0.13	d : 0.09	" : 0.05	= : 0.05	b : 0.03	i : 0.01	a : 0.01	# : 0.01	f : 0.01	
c : 0.48	[ : 0.21	d : 0.05	g : 0.05	= : 0.05	! : 0.03	" : 0.03	i : 0.01	b : 0.01	f : 0.01	
c : 0.63	b : 0.11	d : 0.05	g : 0.05	= : 0.05	[ : 0.03	i : 0.01	f : 0.01	
c : 0.59	b : 0.09	a : 0.05	d : 0.05	g : 0.05	= : 0.05	o : 0.03	i : 0.01	f : 0.01	
m : 0.69	c : 0.19	o : 0.05	l : 0.03	= : 0.01	
m : 0.69	l : 0.24	o : 0.05	
m : 0.69	l : 0.24	o : 0.05	
m : 0.69	l : 0.21	o : 0.05	= : 0.01	c : 0.01	
c : 0.59	b : 0.09	d : 0.05	g : 0.05	o : 0.05	= : 0.05	a : 0.03	i : 0.01	f : 0.01	
c : 0.61	b : 0.11	d : 0.05	g : 0.05	= : 0.05	] : 0.03	i : 0.01	o : 0.01	f : 0.01	
c : 0.63	] : 0.07	d : 0.05	g : 0.05	= : 0.05	i : 0.01	a : 0.01	b : 0.01	2 : 0.01	3 : 0.01	f : 0.01	
] : 0.40	d : 0.11	c : 0.09	2 : 0.09	g : 0.07	= : 0.05	3 : 0.05	4 : 0.01	i : 0.01	e : 0.01	a : 0.01	f : 0.01	
c : 0.21	g : 0.17	2 : 0.13	d : 0.11	b : 0.11	= : 0.05	3 : 0.05	e : 0.03	4 : 0.01	i : 0.01	] : 0.01	a : 0.01	f : 0.01	
g : 0.23	c : 0.19	d : 0.11	b : 0.11	2 : 0.07	= : 0.05	4 : 0.03	e : 0.03	3 : 0.03	i : 0.01	h : 0.01	a : 0.01	] : 0.01	f : 0.01	
g : 0.24	c : 0.17	d : 0.11	a : 0.09	] : 0.09	= : 0.05	2 : 0.05	4 : 0.03	e : 0.03	i : 0.01	h : 0.01	3 : 0.01	b : 0.01	
g : 0.19	] : 0.17	c : 0.11	d : 0.09	2 : 0.09	3 : 0.07	e : 0.05	= : 0.05	4 : 0.03	b : 0.03	h : 0.03	i : 0.01	
g : 0.24	c : 0.13	e : 0.07	] : 0.07	3 : 0.07	b : 0.05	d : 0.05	2 : 0.05	= : 0.05	4 : 0.03	f : 0.03	h : 0.03	i : 0.01	a : 0.01	
g : 0.24	c : 0.19	d : 0.09	] : 0.05	e : 0.05	3 : 0.05	f : 0.05	h : 0.05	b : 0.03	a : 0.03	= : 0.03	4 : 0.01	> : 0.01	: : 0.01	
g : 0.23	d : 0.15	c : 0.13	e : 0.07	f : 0.07	2 : 0.05	h : 0.05	b : 0.03	: : 0.03	] : 0.03	3 : 0.01	4 : 0.01	= : 0.01	> : 0.01	a : 0.01	

#score	550.0141008698981
#seq	52
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_UTR_m2_run2.txt

#BEAR
bdddd"""ffffffooooooffffff22ddddFF	chr17:7126391-7126655(+)$1	264	225	259	10.7429
a!!bb[ggggggg[aooooooa]gggggggbb22	chr14:102550988-102551196(-)$1	208	157	191	13.8618
ff[a####bb[cccooooooccc]bb4444a]ff	chr8:103855681-103855989(-)$1	308	122	156	13.2417
f[ccc[===========mmmm===========]c	chr9:125932120-125932419(-)$1	299	237	271	11.6787
:::ggggggg[ddddoooooodddd333gggggg	chr19:5641649-5641854(+)$1	205	148	182	12.5927
c[ccc===========nnnnn===========22	chr15:69728424-69728698(+)$1	274	167	201	12.4245
ff[a[bb[ccc[cccoooooocccccc]bb]a33	chr4:83346623-83346917(-)$1	294	193	227	14.2307
ddd!!ccc!!eeeeeooooooeeeee333ccc22	chr7:26251260-26251476(+)$1	216	95	129	15.6199
b[iiiiiiiiiccc[annnnna]ccc]iiiiiii	chr8:101315282-101315606(-)$1	324	1	35	12.4268
e[ffffff!!eeeeeooooooeeeee22ffffff	chr1:150192922-150193164(-)$1	242	90	124	14.4765
Dbb!!dddd"""cccooooooccc4444dddd22	chr17:26904544-26904777(-)$1	233	22	56	13.8272
hhhhh[ddddddddaooooooa]dddd]dddd]h	chr14:21679502-21679748(-)$1	246	4	38	12.3280
ee"""bb"""a[cccooooooccc]a]bb333ee	chr1:26603631-26603903(+)$1	272	62	96	14.4266
==========ddddqqqqqqqqdddd22======	chr16:1747750-1747963(+)$1	213	152	186	10.8679
#ccc"""bb!!bbrrrrrrrrrbbbb22ccc444	chr5:133502773-133503003(-)$1	230	78	112	10.4662
hhhdddd"""eeeeeooooooeeeee22dddd::	chr17:34173993-34174268(+)$1	275	239	273	12.3513
ffffffdddd!!cccooooooccc]dddd]ffff	chr3:47451077-47451340(+)$1	263	171	205	13.0716
iiiiii$$$$$ddddoooooodddd666666iii	chr16:11935566-11935777(-)$1	211	58	92	11.7700
==============oooooo==============	chr8:124381289-124381515(-)$1	226	53	87	15.8118
[ffffff"""cccbboooooobb]cccffffff]	chr19:5641678-5641929(+)$1	251	56	90	12.9209
$a[iiiiiiiiibboooooobb]iiiiiiiii]a	chr6:147631132-147631431(+)$1	299	85	119	13.6453
=======####eeeeemmmmeeeee333======	chr5:179267718-179268048(-)$1	330	3	37	12.3939
ccc[ffffff!!cccooooooccc22ffffff]c	chr16:69418392-69418719(-)$1	327	121	155	13.7043
ggggg[ccc[eeeeeooooooeeeee22cccggg	chr17:45297267-45297510(+)$1	243	162	196	15.6237
mccc:eeeee!!cccooooooccc333eeeee::	chrX:107328093-107328393(-)$1	300	32	66	11.4091
eeedddd####ddddoooooodddd4444dddd:	chr6:52128836-52129102(-)$1	266	181	215	12.7468
cc[eeeee!!eeeeeooooooeeeee4444eeee	chr19:50191496-50191748(+)$1	252	76	110	14.3773
dddd[ccc[a!!cccqqqqqqqqccc22a]cccd	chr17:35687019-35687455(-)$1	436	278	312	10.2663
fccceeeee[a[cccoooooocccaeeeee]ccc	chr7:102004307-102004589(+)$1	282	110	144	13.9437
F:ggggggg"""cccoooooocccggggggg:::	chr17:47013422-47013705(-)$1	283	88	122	11.6912
ddd!!ccc!!eeeeeooooooeeeee333ccc22	chr7:26251196-26251460(+)$1	264	159	193	15.6199
==========!!cccqqqqqqqqccc22======	chr9:123342183-123342447(-)$1	264	31	65	12.3195
===============nnnnn==============	chr6:31504233-31504468(-)$1	235	13	47	13.0337
iiii[dddd[ccc[aooooooaccc]dddd22ii	chr11:3988680-3989009(+)$1	329	175	209	13.7864
eeggggggg!!cccaooooooa]ccc22gggggg	chr16:46731307-46731668(+)$1	361	303	337	16.8916
ffffff####eeeeeooooooeeeee22ffffff	chr19:5650918-5651156(+)$1	238	93	127	14.5093
eeee[eeeee!!bboooooobb]eeeee]eeeee	chr4:174253029-174253263(-)$1	234	150	184	11.4525
gg[ccc"""bb[cccnnnnnccc]bb333ccc]g	chr18:33716183-33716445(+)$1	262	119	153	11.9619
eeeffffff[eeeeeooooooeeeee22ffffff	chr7:140159477-140159775(-)$1	298	161	195	13.8542
iiiiiii$$$$$cccooooooccc4444iiiiii	chr15:59185115-59185360(-)$1	245	90	124	16.1633
dddffffff[eeeeeooooooeeeee22ffffff	chr7:140159402-140159677(-)$1	275	63	97	13.7748
"""ccc[dddd[cccooooooccc]dddd]ccc5	chr5:72144106-72144424(+)$1	318	138	172	13.1470
dd[eeeee"""eeeeeooooooeeeeeeeeee]d	chr6:7289988-7290264(-)$1	276	206	240	12.3712
))ccc!!gggggggooooooggggggg22ccc44	chr7:150022900-150023207(+)$1	307	106	140	12.9048
iiiii[ccc!!cccrrrrrrrrrccc22ccc]ii	chr16:89348161-89348387(-)$1	226	162	196	13.2080
a]aggggggg[ccc[annnnna]ccc]ggggggg	chr6:36562095-36562325(+)$1	230	54	88	12.0083
[a####gggggggooooooggggggg22a]a]cc	chr3:121547638-121547917(-)$1	279	199	233	12.6431
###ccc[ccc[bb[aooooooa]bb]cccccc55	chr22:38012849-38013160(+)$1	311	50	84	12.3320
ccc[a[dddd[cccrrrrrrrrrccc22dddd]a	chr1:246754754-246755053(+)$1	299	209	243	11.5458
Eggggggg[dddd[aooooooa]ddddggggggg	chr1:155650074-155650358(-)$1	284	236	270	13.3456
::ggggggg$$$$$aooooooa4444ggggggg:	chr11:17352362-17352636(+)$1	274	71	105	11.7773
""a!!ccc"""bboooooobb333ccc22a4444	chr6:32948573-32948829(+)$1	256	77	111	12.4525
hhhhhheeeee[cccooooooccceeeee333hh	chr1:156288662-156288908(-)$1	246	136	170	12.7256

#otherMatches

#Seq PSSM
ACUACAACCCCCAGCAGCACCUGGGGCAGUGGGU	chr17:7126391-7126655(+)$1	264	225	259	10.7429
GGAAGAUCACUUGGCAGUGAAGGUGAGUGACUGA	chr14:102550988-102551196(-)$1	208	157	191	13.8618
UUGAUGAUGCAAACUACUCCGUUGGCCUGUUGGA	chr8:103855681-103855989(-)$1	308	122	156	13.2417
AGGuacacauguauauauauauauauauauguau	chr9:125932120-125932419(-)$1	299	237	271	11.6787
GGAUAUCAGUGUGUUGGAUGAAGCAGAAAUUGAU	chr19:5641649-5641854(+)$1	205	148	182	12.5927
UUGGAAAUGGUAUGAUUUGGUGUUGUAUCAUUUG	chr15:69728424-69728698(+)$1	274	167	201	12.4245
UGUCCUGUGGUAUGGUCUCUUCCAACUUCAUGUA	chr4:83346623-83346917(-)$1	294	193	227	14.2307
AUUGAUGUUUCUCAUGAAAUGGUGAGUAUGCAGA	chr7:26251260-26251476(+)$1	216	95	129	15.6199
ugucuuuguaagggacaaguagacccauuacaga	chr8:101315282-101315606(-)$1	324	1	35	12.4268
CACUCUUUAAGAAGAAGGAGGUCUUCGAGGGGAG	chr1:150192922-150193164(-)$1	242	90	124	14.4765
UGCAAAGAACUACAGGGAUUGCUGGAAUUUCUGA	chr17:26904544-26904777(-)$1	233	22	56	13.8272
UUGUCCUUCUCAUCCGCAGUAGAGAUGAAGAAUG	chr14:21679502-21679748(-)$1	246	4	38	12.3280
UCAACAGCUGCGUCGUGACAUUGAGGACUUAAGG	chr1:26603631-26603903(+)$1	272	62	96	14.4266
UAUUUCUGGAAGAGUUGCUAGUCUCUCCUCUGGG	chr16:1747750-1747963(+)$1	213	152	186	10.8679
UGGAUGAUGAAGGAGAUGAUGACCCAGUUCCUCU	chr5:133502773-133503003(-)$1	230	78	112	10.4662
UGUGGACUUUUGUACAUACUAGUGCAUUGUUCUG	chr17:34173993-34174268(+)$1	275	239	273	12.3513
AGGUGGCUGCUCUGCUGGAGCGCACGCAGUCCAC	chr3:47451077-47451340(+)$1	263	171	205	13.0716
ACAAAGUAUAUGUAGACGAUGUUACUCUUUUCUU	chr16:11935566-11935777(-)$1	211	58	92	11.7700
auauauauauauauauacaaauauauauauauau	chr8:124381289-124381515(-)$1	226	53	87	15.8118
UCUGGUUGUGUCACAGGAGGAUGUUGAGACCAGU	chr19:5641678-5641929(+)$1	251	56	90	12.9209
AGGGAGCCUUUUAUUAUUUUAUCAGGAGGUUUGU	chr6:147631132-147631431(+)$1	299	85	119	13.6453
GAGCCUGUGGGCCAUGUGAUCGUGGAGUCAGGCU	chr5:179267718-179268048(-)$1	330	3	37	12.3939
UGGAGGCUGAGCUCACACCACUGGAAUCAGCUAU	chr16:69418392-69418719(-)$1	327	121	155	13.7043
CUGCAUGGCAGACCUCUCCCAGGGUCAGGCUUGC	chr17:45297267-45297510(+)$1	243	162	196	15.6237
UCAGACACUUAGCCUGUGAUGAGGAGAGAGUGGA	chrX:107328093-107328393(-)$1	300	32	66	11.4091
CUUUGCAGUAGCACCAGUUAAGGUGAAUAUGUAU	chr6:52128836-52129102(-)$1	266	181	215	12.7468
CUCUCCCUCCCUCCCGCAGAAGGGGGUUUUAGGG	chr19:50191496-50191748(+)$1	252	76	110	14.3773
GGCUCAGAUACACUCUCUGAUUUGGGGAUCUCUA	chr17:35687019-35687455(-)$1	436	278	312	10.2663
CGGGGCUGGACGCUGACUGCCCGGGCCAGCACCU	chr7:102004307-102004589(+)$1	282	110	144	13.9437
UGUCUCCAAACAGGUCUGAUAACUUUGGAGGAAC	chr17:47013422-47013705(-)$1	283	88	122	11.6912
AUUGAUGUUUCUCAUGAAAUGGUGAGUAUGCAGA	chr7:26251196-26251460(+)$1	264	159	193	15.6199
UGGCGGCGUCUGUGGUUUGAAUUCCAGCGGCGCC	chr9:123342183-123342447(-)$1	264	31	65	12.3195
UGUUUUUUUUGGUGGUCUGUCUAUCAAGAAGGAU	chr6:31504233-31504468(-)$1	235	13	47	13.0337
CACAAACUGAUGGACGAUGAUGCCAAUGGUGAUG	chr11:3988680-3989009(+)$1	329	175	209	13.7864
UUGCCUUUAAAUAGCAAAGCAGCCUACCUGGAGG	chr16:46731307-46731668(+)$1	361	303	337	16.8916
UUCUGGGUUAGUGGACUCUCUUCUACAACCAGAG	chr19:5650918-5651156(+)$1	238	93	127	14.5093
UUUUGUAUAGCUGAUAAGAUUCUCUGUAGAGAAA	chr4:174253029-174253263(-)$1	234	150	184	11.4525
AUAAUCAAGUGAUUCACUGGGAAAUAGAGGAUAA	chr18:33716183-33716445(+)$1	262	119	153	11.9619
CAGGCGAAGCUGAGUCAAGAAAUUCAAACUUUGC	chr7:140159477-140159775(-)$1	298	161	195	13.8542
UUUUUCUACAGAUUCAUGGAAGAAGUAAGGAAAA	chr15:59185115-59185360(-)$1	245	90	124	16.1633
CAGGCGAAGCUGAGUCAAGAAAUUCAAACUUUGC	chr7:140159402-140159677(-)$1	275	63	97	13.7748
GAGCAAGGGCUUCAGCAAAUCCUGCAGCUGUUGA	chr5:72144106-72144424(+)$1	318	138	172	13.1470
GCCCUAAUAUUUUUCGGCCUGAUGGGAAUUAGUG	chr6:7289988-7290264(-)$1	276	206	240	12.3712
UGGUGGUGUCACUGUUGUACCAGUGAUGACACAA	chr7:150022900-150023207(+)$1	307	106	140	12.9048
CGGCGACCUGAUGAUGACCAGCUUCGAGAGGAUG	chr16:89348161-89348387(-)$1	226	162	196	13.2080
UGGACGCCGGGUGAGUGAGAGAGUUGGUUGGUGU	chr6:36562095-36562325(+)$1	230	54	88	12.0083
GAAGUUAAAAGGUAAGAAAAUCUUUUUGUGAUUA	chr3:121547638-121547917(-)$1	279	199	233	12.6431
UCUGGCUCUGUGUUGUUCCUCCCACCCAGGCCUC	chr22:38012849-38013160(+)$1	311	50	84	12.3320
UCUGCAUCAGAUGAAAAUGAAAAUCAGCUUGACG	chr1:246754754-246755053(+)$1	299	209	243	11.5458
UCUAGAAGAGGGACUGAACCAAUUCUCCUUUUAG	chr1:155650074-155650358(-)$1	284	236	270	13.3456
UUUUCCAUUCACCAGGUCAUACAGCAGAUGGAAC	chr11:17352362-17352636(+)$1	274	71	105	11.7773
AGGGACAUUUACUGAAGGAGGGACAUGGACAAAA	chr6:32948573-32948829(+)$1	256	77	111	12.4525
CGUGGAGUCAUGAUUAACAAGGAUGUGACCCAUC	chr1:156288662-156288908(-)$1	246	136	170	12.7256

#DB
)((((...((((((......))))))..))))))	chr17:7126391-7126655(+)$1	1	225	259	10.7429
(..((.(((((((.(......).)))))))))..	chr14:102550988-102551196(-)$1	1	157	191	13.8618
((.(....((.(((......))).))....).))	chr8:103855681-103855989(-)$1	1	122	156	13.2417
(.(((.(((((((((((....))))))))))).)	chr9:125932120-125932419(-)$1	1	237	271	11.6787
...(((((((.((((......))))...))))))	chr19:5641649-5641854(+)$1	1	148	182	12.5927
(.((((((((((((((.....)))))))))))..	chr15:69728424-69728698(+)$1	1	167	201	12.4245
((.(.((.(((.(((......)))))).)).)..	chr4:83346623-83346917(-)$1	1	193	227	14.2307
(((..(((..(((((......)))))...)))..	chr7:26251260-26251476(+)$1	1	95	129	15.6199
(.((((((((((((.(.....).))).)))))))	chr8:101315282-101315606(-)$1	1	1	35	12.4268
(.((((((..(((((......)))))..))))))	chr1:150192922-150193164(-)$1	1	90	124	14.4765
(((..((((...(((......)))....))))..	chr17:26904544-26904777(-)$1	1	22	56	13.8272
(((((.(((((((((......).)))).)))).)	chr14:21679502-21679748(-)$1	1	4	38	12.3280
((...((...(.(((......))).).))...))	chr1:26603631-26603903(+)$1	1	62	96	14.4266
((((((((((((((........))))..))))))	chr16:1747750-1747963(+)$1	1	152	186	10.8679
.(((...((..((.........))))..)))...	chr5:133502773-133503003(-)$1	1	78	112	10.4662
)))((((...(((((......)))))..))))..	chr17:34173993-34174268(+)$1	1	239	273	12.3513
((((((((((..(((......))).)))).))))	chr3:47451077-47451340(+)$1	1	171	205	13.0716
((((((.....((((......))))......)))	chr16:11935566-11935777(-)$1	1	58	92	11.7700
((((((((((((((......))))))))))))))	chr8:124381289-124381515(-)$1	1	53	87	15.8118
.((((((...(((((......)).))))))))).	chr19:5641678-5641929(+)$1	1	56	90	12.9209
.(.(((((((((((......)).))))))))).)	chr6:147631132-147631431(+)$1	1	85	119	13.6453
(((((((....(((((....)))))...))))))	chr5:179267718-179268048(-)$1	1	3	37	12.3939
(((.((((((..(((......)))..)))))).)	chr16:69418392-69418719(-)$1	1	121	155	13.7043
(((((.(((.(((((......)))))..))))))	chr17:45297267-45297510(+)$1	1	162	196	15.6237
.))).(((((..(((......)))...)))))..	chrX:107328093-107328393(-)$1	1	32	66	11.4091
)))((((....((((......))))....)))).	chr6:52128836-52129102(-)$1	1	181	215	12.7468
((.(((((..(((((......)))))....))))	chr19:50191496-50191748(+)$1	1	76	110	14.3773
((((.(((.(..(((........)))..).))))	chr17:35687019-35687455(-)$1	1	278	312	10.2663
(((((((((.(.(((......))))))))).)))	chr7:102004307-102004589(+)$1	1	110	144	13.9437
(.(((((((...(((......))))))))))...	chr17:47013422-47013705(-)$1	1	88	122	11.6912
(((..(((..(((((......)))))...)))..	chr7:26251196-26251460(+)$1	1	159	193	15.6199
((((((((((..(((........)))..))))))	chr9:123342183-123342447(-)$1	1	31	65	12.3195
(((((((((((((((.....))))))))))))))	chr6:31504233-31504468(-)$1	1	13	47	13.0337
((((.((((.(((.(......)))).))))..))	chr11:3988680-3989009(+)$1	1	175	209	13.7864
))(((((((..((((......).)))..))))))	chr16:46731307-46731668(+)$1	1	303	337	16.8916
((((((....(((((......)))))..))))))	chr19:5650918-5651156(+)$1	1	93	127	14.5093
((((.(((((..((......)).))))).)))))	chr4:174253029-174253263(-)$1	1	150	184	11.4525
((.(((...((.(((.....))).))...))).)	chr18:33716183-33716445(+)$1	1	119	153	11.9619
(((((((((.(((((......)))))..))))))	chr7:140159477-140159775(-)$1	1	161	195	13.8542
(((((((.....(((......)))....))))))	chr15:59185115-59185360(-)$1	1	90	124	16.1633
(((((((((.(((((......)))))..))))))	chr7:140159402-140159677(-)$1	1	63	97	13.7748
...(((.((((.(((......))).)))).))).	chr5:72144106-72144424(+)$1	1	138	172	13.1470
((.(((((...(((((......)))))))))).)	chr6:7289988-7290264(-)$1	1	206	240	12.3712
..(((..(((((((......)))))))..)))..	chr7:150022900-150023207(+)$1	1	106	140	12.9048
(((((.(((..(((.........)))..))).))	chr16:89348161-89348387(-)$1	1	162	196	13.2080
).)(((((((.(((.(.....).))).)))))))	chr6:36562095-36562325(+)$1	1	54	88	12.0083
.(....(((((((......)))))))..).).))	chr3:121547638-121547917(-)$1	1	199	233	12.6431
...(((.(((.((.(......).)).))))))..	chr22:38012849-38013160(+)$1	1	50	84	12.3320
(((.(.((((.(((.........)))..)))).)	chr1:246754754-246755053(+)$1	1	209	243	11.5458
)(((((((.((((.(......).)))))))))))	chr1:155650074-155650358(-)$1	1	236	270	13.3456
..(((((((.....(......)....))))))).	chr11:17352362-17352636(+)$1	1	71	105	11.7773
..(..(((...((......))...)))..)....	chr6:32948573-32948829(+)$1	1	77	111	12.4525
(((((((((((.(((......))))))))...))	chr1:156288662-156288908(-)$1	1	136	170	12.7256

#PSSM
f : 0.11	e : 0.11	d : 0.09	= : 0.09	c : 0.07	i : 0.07	h : 0.05	b : 0.03	a : 0.03	: : 0.03	# : 0.03	[ : 0.03	g : 0.03	" : 0.03	D : 0.01	$ : 0.01	m : 0.01	F : 0.01	) : 0.01	E : 0.01	
d : 0.11	c : 0.11	f : 0.09	e : 0.09	= : 0.09	[ : 0.07	i : 0.07	: : 0.05	h : 0.05	g : 0.05	a : 0.03	" : 0.03	! : 0.01	b : 0.01	) : 0.01	] : 0.01	# : 0.01	
c : 0.15	[ : 0.11	d : 0.09	i : 0.09	= : 0.09	g : 0.09	f : 0.07	h : 0.05	e : 0.05	" : 0.03	a : 0.03	# : 0.03	! : 0.01	: : 0.01	b : 0.01	
c : 0.16	g : 0.13	i : 0.11	f : 0.11	= : 0.09	d : 0.07	! : 0.07	e : 0.05	a : 0.03	h : 0.03	[ : 0.03	b : 0.01	" : 0.01	# : 0.01	
g : 0.13	f : 0.13	c : 0.11	i : 0.09	= : 0.09	[ : 0.07	! : 0.07	d : 0.05	e : 0.05	# : 0.03	h : 0.03	" : 0.03	b : 0.01	: : 0.01	a : 0.01	
c : 0.13	f : 0.13	[ : 0.11	g : 0.11	= : 0.11	e : 0.09	i : 0.07	d : 0.07	" : 0.03	# : 0.03	b : 0.03	! : 0.01	h : 0.01	
g : 0.15	= : 0.13	d : 0.13	c : 0.11	e : 0.11	f : 0.09	" : 0.05	i : 0.05	# : 0.03	b : 0.03	[ : 0.03	$ : 0.01	! : 0.01	
g : 0.16	c : 0.13	= : 0.11	d : 0.11	e : 0.11	" : 0.09	# : 0.07	f : 0.07	i : 0.03	$ : 0.03	[ : 0.01	b : 0.01	
g : 0.15	= : 0.11	d : 0.11	" : 0.11	f : 0.07	c : 0.07	! : 0.07	e : 0.07	# : 0.05	b : 0.03	i : 0.03	$ : 0.03	[ : 0.03	
! : 0.13	" : 0.13	= : 0.11	g : 0.09	d : 0.09	[ : 0.09	$ : 0.05	# : 0.05	e : 0.05	f : 0.03	b : 0.03	c : 0.03	i : 0.03	a : 0.01	
e : 0.18	! : 0.16	[ : 0.09	= : 0.07	" : 0.07	d : 0.07	g : 0.05	c : 0.05	$ : 0.05	i : 0.03	a : 0.03	# : 0.03	f : 0.01	b : 0.01	
e : 0.20	c : 0.15	d : 0.11	[ : 0.11	! : 0.11	= : 0.07	g : 0.05	b : 0.05	" : 0.03	$ : 0.03	f : 0.01	i : 0.01	
c : 0.41	e : 0.20	d : 0.11	b : 0.09	= : 0.07	g : 0.05	f : 0.01	$ : 0.01	
c : 0.37	e : 0.20	d : 0.09	[ : 0.07	= : 0.07	b : 0.05	o : 0.03	f : 0.01	r : 0.01	g : 0.01	$ : 0.01	
c : 0.26	e : 0.20	o : 0.15	a : 0.13	= : 0.05	d : 0.05	r : 0.05	[ : 0.03	q : 0.01	b : 0.01	
o : 0.73	q : 0.05	r : 0.05	= : 0.03	a : 0.03	e : 0.03	n : 0.03	
o : 0.75	n : 0.09	q : 0.05	r : 0.05	= : 0.01	m : 0.01	
o : 0.75	n : 0.09	q : 0.05	r : 0.05	m : 0.03	
o : 0.75	n : 0.09	q : 0.05	r : 0.05	m : 0.03	
o : 0.71	n : 0.09	q : 0.05	r : 0.05	m : 0.03	g : 0.01	b : 0.01	
o : 0.60	n : 0.05	q : 0.05	r : 0.05	b : 0.05	c : 0.03	= : 0.03	g : 0.03	f : 0.01	m : 0.01	e : 0.01	
c : 0.24	e : 0.18	a : 0.16	= : 0.07	d : 0.05	q : 0.05	r : 0.05	b : 0.05	g : 0.03	f : 0.01	o : 0.01	3 : 0.01	
c : 0.26	e : 0.20	] : 0.16	= : 0.07	d : 0.07	b : 0.03	q : 0.03	g : 0.03	r : 0.03	f : 0.01	4 : 0.01	3 : 0.01	
c : 0.35	e : 0.22	d : 0.11	= : 0.07	g : 0.05	] : 0.05	b : 0.03	f : 0.01	i : 0.01	4 : 0.01	3 : 0.01	
e : 0.24	c : 0.20	d : 0.11	g : 0.07	b : 0.07	= : 0.07	4 : 0.05	] : 0.05	f : 0.01	i : 0.01	2 : 0.01	3 : 0.01	a : 0.01	
e : 0.24	c : 0.18	d : 0.09	g : 0.07	= : 0.07	4 : 0.07	b : 0.05	3 : 0.05	] : 0.03	f : 0.01	a : 0.01	6 : 0.01	i : 0.01	2 : 0.01	
2 : 0.28	3 : 0.11	4 : 0.09	d : 0.09	g : 0.07	= : 0.07	c : 0.07	e : 0.07	] : 0.05	6 : 0.01	i : 0.01	f : 0.01	
2 : 0.32	g : 0.09	4 : 0.09	3 : 0.09	e : 0.09	= : 0.07	d : 0.05	] : 0.03	i : 0.03	f : 0.03	b : 0.01	6 : 0.01	c : 0.01	
d : 0.15	g : 0.13	= : 0.13	f : 0.11	c : 0.07	e : 0.07	4 : 0.05	3 : 0.05	i : 0.05	b : 0.03	a : 0.03	2 : 0.03	6 : 0.01	] : 0.01	
c : 0.15	d : 0.13	g : 0.13	= : 0.13	f : 0.11	] : 0.07	e : 0.07	i : 0.05	4 : 0.03	3 : 0.03	b : 0.01	6 : 0.01	a : 0.01	
c : 0.18	= : 0.13	f : 0.13	d : 0.11	g : 0.11	e : 0.07	i : 0.05	a : 0.03	] : 0.03	3 : 0.03	b : 0.01	6 : 0.01	2 : 0.01	4 : 0.01	
c : 0.15	= : 0.13	f : 0.13	d : 0.11	g : 0.11	i : 0.07	e : 0.07	] : 0.05	3 : 0.03	4 : 0.03	b : 0.01	a : 0.01	: : 0.01	2 : 0.01	
f : 0.13	] : 0.13	g : 0.11	2 : 0.09	i : 0.09	= : 0.09	c : 0.07	e : 0.05	4 : 0.05	: : 0.05	F : 0.01	3 : 0.01	d : 0.01	5 : 0.01	h : 0.01	
f : 0.11	g : 0.11	2 : 0.09	i : 0.09	= : 0.09	: : 0.09	c : 0.07	e : 0.05	4 : 0.05	h : 0.03	a : 0.03	d : 0.03	5 : 0.03	F : 0.01	3 : 0.01	] : 0.01	

#score	692.7703624205776
#seq	53
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_transcript_m3_run2.txt

#BEAR
!cccqqqqqqqqccc22	chr1:153963490-153963712(+)$1	222	180	197	13.9988
ddddqqqqqqqqdddd:	chr12:56387884-56388142(+)$1	258	94	111	12.6255
ddddqqqqqqqqdddd:	chr22:29190647-29190890(-)$1	243	105	122	12.6255
e[bbqqqqqqqqbb]ee	chr19:49468612-49468830(+)$1	218	129	146	12.7954
d[bbqqqqqqqqbb]dd	chr11:118472314-118472564(+)$1	250	115	132	12.5111
!cccqqqqqqqqccc]g	chr20:377558-377842(+)$1	284	15	32	14.2543
###aqqqqqqqqa333g	chr3:39184143-39184466(-)$1	323	128	145	13.2304
!cccqqqqqqqqccc22	chr4:145031699-145031955(-)$1	256	65	82	13.9988
!!bbqqqqqqqqbb22d	chr19:15350683-15350920(-)$1	237	38	55	12.3512
"cccqqqqqqqqccc44	chr12:111894923-111895206(-)$1	283	71	88	14.1446
ddddqqqqqqqqddddI	chr6:32136301-32136566(-)$1	265	204	221	12.1615
eeeeqqqqqqqqeeeee	chr5:10761025-10761292(-)$1	267	93	110	13.6608
eeeeqqqqqqqqeeeee	chr7:43678974-43679207(-)$1	233	138	155	13.6608
ddddqqqqqqqqddddc	chr22:21977769-21978011(+)$1	242	173	190	13.3596
$cccqqqqqqqqccc33	chr5:10681005-10681305(-)$1	300	152	169	14.0943
"cccqqqqqqqqccc33	chr22:19956258-19956527(+)$1	269	128	145	14.3177
=cccqqqqqqqqccc::	chr1:28177258-28177514(+)$1	256	194	211	12.3783
[cccqqqqqqqqccc]c	chr17:40176393-40176636(+)$1	243	45	62	14.1932
dd[aqqqqqqqqa]ddd	chr7:116550185-116550464(+)$1	279	37	54	13.2677
'cccqqqqqqqqcccdd	chr8:101932443-101932684(-)$1	241	99	116	13.3342
ecccqqqqqqqqccc22	chr3:169866845-169867122(-)$1	277	235	252	13.9016
ggbbqqqqqqqqbb]gg	chr4:122739860-122740104(-)$1	244	64	81	12.7631
ffffqqqqqqqqfffff	chr3:48786161-48786420(-)$1	259	181	198	13.0509
eeeeqqqqqqqqeeeee	chr6:53213537-53213778(-)$1	241	60	77	13.6608
ddddqqqqqqqqdddde	chr17:73841919-73842191(-)$1	272	237	254	13.3846
ffffqqqqqqqqfffff	chr21:33044101-33044478(-)$1	377	7	24	13.0509
eeeeqqqqqqqqeeeee	chr22:38258932-38259145(+)$1	213	8	25	13.6608
ffffqqqqqqqqfffff	chr6:7108513-7108765(+)$1	252	150	167	13.0509
ggggqqqqqqqqggggg	chr8:145065348-145065597(+)$1	249	229	246	13.6244
eeeeqqqqqqqqeeeee	chr3:33907999-33908285(+)$1	286	11	28	13.6608
!cccqqqqqqqqcccee	chr16:81744563-81744814(+)$1	251	132	149	14.2453
cc[aqqqqqqqqaccc3	chr9:130941183-130941438(-)$1	255	99	116	13.8257
eeeeqqqqqqqqeeeee	chr1:27057891-27058158(+)$1	267	156	173	13.6608
ddddqqqqqqqqdddd]	chr17:18111823-18112092(+)$1	269	62	79	13.4403
eebbqqqqqqqqbb]ee	chr12:57006699-57006935(-)$1	236	128	145	12.8289
[cccqqqqqqqqccc33	chr19:2038690-2038990(-)$1	300	137	154	14.3783
c[bbqqqqqqqqbbccc	chr1:29446142-29446390(+)$1	248	73	90	12.7263
ffffqqqqqqqqfffff	chr16:29974326-29974639(+)$1	313	18	35	13.0509
ddddqqqqqqqqddddD	chr12:57118988-57119224(-)$1	236	19	36	12.3594
eeeeqqqqqqqqeeeee	chr6:33169784-33170002(+)$1	218	27	44	13.6608
ggggqqqqqqqqggggg	chr2:55199459-55199721(-)$1	262	92	109	13.6244
ggggqqqqqqqqggggg	chr1:6245851-6246091(-)$1	240	98	115	13.6244
ffffqqqqqqqqfffff	chr1:167759509-167759763(+)$1	254	83	100	13.0509
ggggqqqqqqqqggggg	chrX:153628704-153628906(+)$1	202	150	167	13.6244
ddddqqqqqqqqddddG	chr6:34213662-34213871(+)$1	209	37	54	12.9858
eeeeqqqqqqqqeeeee	chrX:40531012-40531325(-)$1	313	63	80	13.6608
ddddqqqqqqqqdddd:	chr4:48384642-48385001(+)$1	359	61	78	12.6255
[cccqqqqqqqqccc]c	chr11:61734953-61735159(-)$1	206	138	155	14.1932
ggggqqqqqqqqggggg	chr1:154232342-154232605(+)$1	263	25	42	13.6244
!cccqqqqqqqqccc33	chr10:102123557-102123782(+)$1	225	95	112	14.4110
#cccqqqqqqqqccc66	chr12:57919342-57919614(+)$1	272	175	192	13.2252
bb[aqqqqqqqqa]bb]	chr11:18428921-18429155(+)$1	234	78	95	12.3332
eeeeqqqqqqqqeeeee	chrX:102471839-102472095(+)$1	256	65	82	13.6608
gg[aqqqqqqqqa]ggg	chr4:73957494-73957759(-)$1	265	135	152	13.5417
eeeeqqqqqqqqeeeee	chr6:7881923-7882195(-)$1	272	9	26	13.6608
eeeeqqqqqqqqeeeee	chr5:133533267-133533519(-)$1	252	219	236	13.6608
eeeeqqqqqqqqeeeee	chr19:1925531-1925750(+)$1	219	144	161	13.6608
ddddqqqqqqqqdddd:	chr1:183513964-183514183(+)$1	219	1	18	12.6255
[cccqqqqqqqqcccbb	chr5:139622871-139623138(+)$1	267	51	68	13.5928
ggggqqqqqqqqggggg	chr6:89790591-89790879(+)$1	288	193	210	13.6244
ddddqqqqqqqqdddd:	chr10:72181506-72181778(+)$1	272	28	45	12.6255
ffffqqqqqqqqfffff	chr3:183960556-183960813(-)$1	257	132	149	13.0509
ddddqqqqqqqqdddd:	chr3:48509411-48509708(-)$1	297	196	213	12.6255
ffffqqqqqqqqfffff	chr17:66039976-66040251(+)$1	275	208	225	13.0509
"cccqqqqqqqqccc33	chr6:158365005-158365338(+)$1	333	304	321	14.3177
!cccqqqqqqqqccc]a	chr16:28838156-28838371(+)$1	215	125	142	14.2187
====qqqqqqqq=====	chr18:3256010-3256269(+)$1	259	173	190	13.6516
eeeeqqqqqqqqeeeee	chr20:35407803-35408114(-)$1	311	135	152	13.6608
:cccqqqqqqqqccccc	chr17:39911345-39911559(-)$1	214	118	135	12.9861
ffffqqqqqqqqfffff	chr19:1420402-1420663(+)$1	261	213	230	13.0509
ecccqqqqqqqqccccc	chr1:27734180-27734420(-)$1	240	159	176	14.0432
bb[aqqqqqqqqa]bb]	chr11:18428955-18429211(+)$1	256	44	61	12.3332
eeeeqqqqqqqqeeeee	chr19:42734865-42735117(-)$1	252	17	34	13.6608

#otherMatches

#Seq PSSM
UUCCUACUUCAUGGAUG	chr1:153963490-153963712(+)$1	222	180	197	13.9988
CUUCCUUUCCCAGAAGC	chr12:56387884-56388142(+)$1	258	94	111	12.6255
GGCAUCCUGGCUUGCCU	chr22:29190647-29190890(-)$1	243	105	122	12.6255
UAGCUCCUUCUUGCCAA	chr19:49468612-49468830(+)$1	218	129	146	12.7954
UCCUUCCAGUUUAGAAC	chr11:118472314-118472564(+)$1	250	115	132	12.5111
aggagacaauauucccu	chr20:377558-377842(+)$1	284	15	32	14.2543
CCCCUUUCAGCUGCCCG	chr3:39184143-39184466(-)$1	323	128	145	13.2304
ACAUAUAUAUAAGUGCC	chr4:145031699-145031955(-)$1	256	65	82	13.9988
CAGCAGUUCUAAGCCAG	chr19:15350683-15350920(-)$1	237	38	55	12.3512
UGCGCACCCUAACGCUA	chr12:111894923-111895206(-)$1	283	71	88	14.1446
GUGGACAUGACCCCACC	chr6:32136301-32136566(-)$1	265	204	221	12.1615
GCGGAAGCCCCGCCGCG	chr5:10761025-10761292(-)$1	267	93	110	13.6608
UCCAGCCACCAGUGGGA	chr7:43678974-43679207(-)$1	233	138	155	13.6608
AGGGACUCUCAGCCCUG	chr22:21977769-21978011(+)$1	242	173	190	13.3596
AGCCUGCCCCAUGGCCC	chr5:10681005-10681305(-)$1	300	152	169	14.0943
UGCGCCCUGACAUGCUA	chr22:19956258-19956527(+)$1	269	128	145	14.3177
AAACUAAAAAAUGUUUC	chr1:28177258-28177514(+)$1	256	194	211	12.3783
UGUCCUUUUCUUGGCUG	chr17:40176393-40176636(+)$1	243	45	62	14.1932
AAACUUAAAAUUGAUUC	chr7:116550185-116550464(+)$1	279	37	54	13.2677
UGCCUACAUACUGGUUU	chr8:101932443-101932684(-)$1	241	99	116	13.3342
UCCGAGCUCAAAUGGUA	chr3:169866845-169867122(-)$1	277	235	252	13.9016
CUGACCCAUACCUCAAG	chr4:122739860-122740104(-)$1	244	64	81	12.7631
CUUUAUUAUCAGAAAGU	chr3:48786161-48786420(-)$1	259	181	198	13.0509
GUGUCUCCUUCUACAUC	chr6:53213537-53213778(-)$1	241	60	77	13.6608
AACAUUCACUCUUGUUU	chr17:73841919-73842191(-)$1	272	237	254	13.3846
GGGCUUUGCGAUGCCUC	chr21:33044101-33044478(-)$1	377	7	24	13.0509
UAUCUGUAUCUUGAUAU	chr22:38258932-38259145(+)$1	213	8	25	13.6608
GAUGCGCAUCCAUAUUA	chr6:7108513-7108765(+)$1	252	150	167	13.0509
CCCUACCCCCAAGGGGG	chr8:145065348-145065597(+)$1	249	229	246	13.6244
GCAGUAAUAUGUCUGCU	chr3:33907999-33908285(+)$1	286	11	28	13.6608
AAACCAACCUCCGUUUC	chr16:81744563-81744814(+)$1	251	132	149	14.2453
gcacauucacagggccc	chr9:130941183-130941438(-)$1	255	99	116	13.8257
CAGUCCCAGCAAACUGC	chr1:27057891-27058158(+)$1	267	156	173	13.6608
GGCCAGGACCUAGGUUC	chr17:18111823-18112092(+)$1	269	62	79	13.4403
UCCUGCAAGGUAAGUGA	chr12:57006699-57006935(-)$1	236	128	145	12.8289
CCCUCCACACCAAGGCC	chr19:2038690-2038990(-)$1	300	137	154	14.3783
ACGCCUUUUGAUGCUCA	chr1:29446142-29446390(+)$1	248	73	90	12.7263
gaaguccuuugucuucu	chr16:29974326-29974639(+)$1	313	18	35	13.0509
UGACAGUCACUCGUCAA	chr12:57118988-57119224(-)$1	236	19	36	12.3594
AGAUAUUCCCUCAUCUG	chr6:33169784-33170002(+)$1	218	27	44	13.6608
GAAGAAGAAAUAUUUCU	chr2:55199459-55199721(-)$1	262	92	109	13.6244
GCCCAGCAAUGGGGGCC	chr1:6245851-6246091(-)$1	240	98	115	13.6244
GAAUCCUCACCAGUUCU	chr1:167759509-167759763(+)$1	254	83	100	13.0509
CCAGGGUUCACAUUGGC	chrX:153628704-153628906(+)$1	202	150	167	13.6244
AAUGUUCAUCCUCAUUG	chr6:34213662-34213871(+)$1	209	37	54	12.9858
UUGGCCAUUUUACCAAC	chrX:40531012-40531325(-)$1	313	63	80	13.6608
GAUGACAAUAUGCAUCA	chr4:48384642-48385001(+)$1	359	61	78	12.6255
CGGCCGCCCAUAGCCAG	chr11:61734953-61735159(-)$1	206	138	155	14.1932
UCAUGCUGGGGAAUGAG	chr1:154232342-154232605(+)$1	263	25	42	13.6244
UGCAUAUGAGCCUGCCC	chr10:102123557-102123782(+)$1	225	95	112	14.4110
CAGACCCUCCUCUCUUC	chr12:57919342-57919614(+)$1	272	175	192	13.2252
CAGCUAUAUCCUGAUGC	chr11:18428921-18429155(+)$1	234	78	95	12.3332
CUUGGGGGCAGGCAGGG	chrX:102471839-102472095(+)$1	256	65	82	13.6608
GUUGCCCAUGACCCACU	chr4:73957494-73957759(-)$1	265	135	152	13.5417
AAGCACAUACAGGCUUA	chr6:7881923-7882195(-)$1	272	9	26	13.6608
UCAUCAACAGCCGUGAC	chr5:133533267-133533519(-)$1	252	219	236	13.6608
CUGGAGCCCUCCCCAGG	chr19:1925531-1925750(+)$1	219	144	161	13.6608
UAGAAGACUCCCUCUAC	chr1:183513964-183514183(+)$1	219	1	18	12.6255
UAGGACCAUCCACCUGC	chr5:139622871-139623138(+)$1	267	51	68	13.5928
CCUCAUUUCCUAGGGGG	chr6:89790591-89790879(+)$1	288	193	210	13.6244
ACACUGAUACUUGUGUG	chr10:72181506-72181778(+)$1	272	28	45	12.6255
CCAGUUCUACGUCUGGU	chr3:183960556-183960813(-)$1	257	132	149	13.0509
UGCAACAACUCCUGUAC	chr3:48509411-48509708(-)$1	297	196	213	12.6255
AAGGUAACGAAGUCUUA	chr17:66039976-66040251(+)$1	275	208	225	13.0509
AUCAAAUGAAUAUGAGA	chr6:158365005-158365338(+)$1	333	304	321	14.3177
ACGACUAUGACCUCGAG	chr16:28838156-28838371(+)$1	215	125	142	14.2187
AGUUAUUCGCUCGAUUU	chr18:3256010-3256269(+)$1	259	173	190	13.6516
GCCCUUCUCACUGGGCU	chr20:35407803-35408114(-)$1	311	135	152	13.6608
UCUGUUUUCCCCCAGCA	chr17:39911345-39911559(-)$1	214	118	135	12.9861
UGCCCAGGAGCAGGCGC	chr19:1420402-1420663(+)$1	261	213	230	13.0509
UCUGAAUGAACACAGCU	chr1:27734180-27734420(-)$1	240	159	176	14.0432
CAGCUAUAUCCUGAUGC	chr11:18428955-18429211(+)$1	256	44	61	12.3332
AGAGAAUUCCUACUUUU	chr19:42734865-42735117(-)$1	252	17	34	13.6608

#DB
.(((........)))..	chr1:153963490-153963712(+)$1	1	180	197	13.9988
((((........)))).	chr12:56387884-56388142(+)$1	1	94	111	12.6255
((((........)))).	chr22:29190647-29190890(-)$1	1	105	122	12.6255
(.((........)).))	chr19:49468612-49468830(+)$1	1	129	146	12.7954
(.((........)).))	chr11:118472314-118472564(+)$1	1	115	132	12.5111
.(((........))).)	chr20:377558-377842(+)$1	1	15	32	14.2543
...(........)...)	chr3:39184143-39184466(-)$1	1	128	145	13.2304
.(((........)))..	chr4:145031699-145031955(-)$1	1	65	82	13.9988
..((........))..)	chr19:15350683-15350920(-)$1	1	38	55	12.3512
.(((........)))..	chr12:111894923-111895206(-)$1	1	71	88	14.1446
((((........)))))	chr6:32136301-32136566(-)$1	1	204	221	12.1615
((((........)))))	chr5:10761025-10761292(-)$1	1	93	110	13.6608
((((........)))))	chr7:43678974-43679207(-)$1	1	138	155	13.6608
((((........)))))	chr22:21977769-21978011(+)$1	1	173	190	13.3596
.(((........)))..	chr5:10681005-10681305(-)$1	1	152	169	14.0943
.(((........)))..	chr22:19956258-19956527(+)$1	1	128	145	14.3177
)(((........)))..	chr1:28177258-28177514(+)$1	1	194	211	12.3783
.(((........))).)	chr17:40176393-40176636(+)$1	1	45	62	14.1932
((.(........).)))	chr7:116550185-116550464(+)$1	1	37	54	13.2677
.(((........)))))	chr8:101932443-101932684(-)$1	1	99	116	13.3342
((((........)))..	chr3:169866845-169867122(-)$1	1	235	252	13.9016
((((........)).))	chr4:122739860-122740104(-)$1	1	64	81	12.7631
((((........)))))	chr3:48786161-48786420(-)$1	1	181	198	13.0509
((((........)))))	chr6:53213537-53213778(-)$1	1	60	77	13.6608
((((........)))))	chr17:73841919-73842191(-)$1	1	237	254	13.3846
((((........)))))	chr21:33044101-33044478(-)$1	1	7	24	13.0509
((((........)))))	chr22:38258932-38259145(+)$1	1	8	25	13.6608
((((........)))))	chr6:7108513-7108765(+)$1	1	150	167	13.0509
((((........)))))	chr8:145065348-145065597(+)$1	1	229	246	13.6244
((((........)))))	chr3:33907999-33908285(+)$1	1	11	28	13.6608
.(((........)))))	chr16:81744563-81744814(+)$1	1	132	149	14.2453
((.(........)))).	chr9:130941183-130941438(-)$1	1	99	116	13.8257
((((........)))))	chr1:27057891-27058158(+)$1	1	156	173	13.6608
((((........)))).	chr17:18111823-18112092(+)$1	1	62	79	13.4403
((((........)).))	chr12:57006699-57006935(-)$1	1	128	145	12.8289
.(((........)))..	chr19:2038690-2038990(-)$1	1	137	154	14.3783
(.((........)))))	chr1:29446142-29446390(+)$1	1	73	90	12.7263
((((........)))))	chr16:29974326-29974639(+)$1	1	18	35	13.0509
((((........))))(	chr12:57118988-57119224(-)$1	1	19	36	12.3594
((((........)))))	chr6:33169784-33170002(+)$1	1	27	44	13.6608
((((........)))))	chr2:55199459-55199721(-)$1	1	92	109	13.6244
((((........)))))	chr1:6245851-6246091(-)$1	1	98	115	13.6244
((((........)))))	chr1:167759509-167759763(+)$1	1	83	100	13.0509
((((........)))))	chrX:153628704-153628906(+)$1	1	150	167	13.6244
((((........))))(	chr6:34213662-34213871(+)$1	1	37	54	12.9858
((((........)))))	chrX:40531012-40531325(-)$1	1	63	80	13.6608
((((........)))).	chr4:48384642-48385001(+)$1	1	61	78	12.6255
.(((........))).)	chr11:61734953-61735159(-)$1	1	138	155	14.1932
((((........)))))	chr1:154232342-154232605(+)$1	1	25	42	13.6244
.(((........)))..	chr10:102123557-102123782(+)$1	1	95	112	14.4110
.(((........)))..	chr12:57919342-57919614(+)$1	1	175	192	13.2252
((.(........).)).	chr11:18428921-18429155(+)$1	1	78	95	12.3332
((((........)))))	chrX:102471839-102472095(+)$1	1	65	82	13.6608
((.(........).)))	chr4:73957494-73957759(-)$1	1	135	152	13.5417
((((........)))))	chr6:7881923-7882195(-)$1	1	9	26	13.6608
((((........)))))	chr5:133533267-133533519(-)$1	1	219	236	13.6608
((((........)))))	chr19:1925531-1925750(+)$1	1	144	161	13.6608
((((........)))).	chr1:183513964-183514183(+)$1	1	1	18	12.6255
.(((........)))))	chr5:139622871-139623138(+)$1	1	51	68	13.5928
((((........)))))	chr6:89790591-89790879(+)$1	1	193	210	13.6244
((((........)))).	chr10:72181506-72181778(+)$1	1	28	45	12.6255
((((........)))))	chr3:183960556-183960813(-)$1	1	132	149	13.0509
((((........)))).	chr3:48509411-48509708(-)$1	1	196	213	12.6255
((((........)))))	chr17:66039976-66040251(+)$1	1	208	225	13.0509
.(((........)))..	chr6:158365005-158365338(+)$1	1	304	321	14.3177
.(((........))).)	chr16:28838156-28838371(+)$1	1	125	142	14.2187
((((........)))))	chr18:3256010-3256269(+)$1	1	173	190	13.6516
((((........)))))	chr20:35407803-35408114(-)$1	1	135	152	13.6608
.(((........)))((	chr17:39911345-39911559(-)$1	1	118	135	12.9861
((((........)))))	chr19:1420402-1420663(+)$1	1	213	230	13.0509
)(((........)))((	chr1:27734180-27734420(-)$1	1	159	176	14.0432
((.(........).)).	chr11:18428955-18429211(+)$1	1	44	61	12.3332
((((........)))))	chr19:42734865-42735117(-)$1	1	17	34	13.6608

#PSSM
e : 0.24	d : 0.19	g : 0.10	f : 0.10	! : 0.09	[ : 0.05	" : 0.04	# : 0.02	= : 0.02	c : 0.02	b : 0.02	$ : 0.01	' : 0.01	: : 0.01	
c : 0.28	e : 0.20	d : 0.17	g : 0.10	f : 0.10	[ : 0.04	b : 0.02	# : 0.01	! : 0.01	= : 0.01	
c : 0.27	e : 0.19	d : 0.16	f : 0.10	b : 0.08	g : 0.08	[ : 0.06	# : 0.01	= : 0.01	
c : 0.27	e : 0.19	d : 0.16	f : 0.10	b : 0.08	a : 0.08	g : 0.08	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.27	e : 0.19	d : 0.16	f : 0.10	b : 0.08	a : 0.08	g : 0.08	= : 0.01	
c : 0.28	e : 0.19	d : 0.16	f : 0.10	b : 0.08	g : 0.08	] : 0.05	3 : 0.01	= : 0.01	
c : 0.30	e : 0.19	d : 0.17	f : 0.10	g : 0.09	] : 0.05	b : 0.02	3 : 0.01	2 : 0.01	= : 0.01	
e : 0.23	d : 0.20	g : 0.10	f : 0.10	3 : 0.08	2 : 0.05	] : 0.05	c : 0.05	b : 0.04	4 : 0.01	: : 0.01	6 : 0.01	= : 0.01	
e : 0.24	g : 0.13	f : 0.10	: : 0.09	c : 0.08	3 : 0.08	d : 0.05	2 : 0.04	] : 0.04	4 : 0.01	I : 0.01	D : 0.01	G : 0.01	6 : 0.01	b : 0.01	a : 0.01	= : 0.01	

#score	977.2390086432954
#seq	73
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_CDS_m3_run1.txt

#BEAR
eeeeuuuuuuuuuuuueeee	chr9:102778569-102778820(-)$1	251	167	187	22.4670
cccuuuuuuuuuuuucccii	chr10:102116233-102116469(+)$1	236	148	168	21.4914
ffffvvvvvvvvvvvvvfff	chr2:162868223-162868445(-)$1	222	60	80	21.5647
ggggtttttttttttggggg	chr19:19232313-19232559(-)$1	246	216	236	21.8226
eeeevvvvvvvvvvvvveee	chr15:39885696-39885947(+)$1	251	170	190	22.3180
ggggwwwwwwwwwwwwwwgg	chr2:26609258-26609499(+)$1	241	115	135	20.8281
eeeeuuuuuuuuuuuueeee	chr17:76969025-76969258(-)$1	233	210	230	22.4670
yyyyyyyyyyyyyyycccee	chr4:166405473-166405697(+)$1	224	161	181	18.1019
$ccctttttttttttccccc	chr14:24659686-24659926(-)$1	240	211	231	21.9976
gggguuuuuuuuuuuugggg	chr1:19566726-19567037(-)$1	311	42	62	22.3777
e[bbtttttttttttbb]ee	chr13:113803477-113803747(+)$1	270	44	64	21.2527
eeeevvvvvvvvvvvvveee	chr21:27327944-27328169(-)$1	225	133	153	22.3180
====wwwwwwwwwwwwww==	chr17:6607177-6607434(-)$1	257	21	41	20.8348
!!bbwwwwwwwwwwwwwwbb	chr12:58111902-58112156(+)$1	254	186	206	19.9010
cccvvvvvvvvvvvvvccc:	chr2:85779495-85779737(-)$1	242	219	239	21.0944
[cccuuuuuuuuuuuucccf	chr12:7295658-7295873(+)$1	215	117	137	22.6092
eeeettttttttttteeeee	chr6:29798055-29798287(+)$1	232	190	210	21.9881
[ccctttttttttttccc==	chr2:187532311-187532579(+)$1	268	197	217	22.4520
gggguuuuuuuuuuuugggg	chr17:42427776-42428012(+)$1	236	147	167	22.3777
ddddtttttttttttdddd]	chr4:74307968-74308188(+)$1	220	87	107	21.8915
gggguuuuuuuuuuuugggg	chr17:79804286-79804549(-)$1	263	196	216	22.3777
fffftttttttttttfffff	chr12:50155386-50155632(+)$1	246	160	180	21.1461
eeeevvvvvvvvvvvvveee	chr17:1680614-1680846(+)$1	232	24	44	22.3180
[bbvvvvvvvvvvvvvbb33	chr19:10394629-10394852(+)$1	223	61	81	20.7423
eeeevvvvvvvvvvvvveee	chr3:133486901-133487108(+)$1	207	104	124	22.3180
gggguuuuuuuuuuuugggg	chr2:216238008-216238231(-)$1	223	149	169	22.3777
cccvvvvvvvvvvvvvccc]	chr10:73581533-73581734(-)$1	201	92	112	21.9161
!!bbtttttttttttbb22g	chr10:114184995-114185216(+)$1	221	117	137	20.7577
dccctttttttttttccc]d	chr7:6505622-6505851(-)$1	229	103	123	22.2204
ffffyyyyyyyyyyyyyyyy	chr9:123779820-123780033(-)$1	213	16	36	19.2709
ffffuuuuuuuuuuuuffff	chr5:151043625-151043896(-)$1	271	135	155	21.6581
dddduuuuuuuuuuuudddd	chr3:9982433-9982754(+)$1	321	143	163	22.2638
eeeettttttttttteeeee	chr20:3562774-3563023(+)$1	249	137	157	21.9881
ggggvvvvvvvvvvvvvggg	chr11:62402195-62402425(-)$1	230	130	150	22.2277
[ccctttttttttttccc]b	chr3:133475574-133475780(+)$1	206	20	40	22.1336
dddduuuuuuuuuuuudddd	chr1:116943421-116943645(+)$1	224	164	184	22.2638
ffffwwwwwwwwwwwwwwff	chr15:44055189-44055432(+)$1	243	62	82	20.2551
f[bbvvvvvvvvvvvvvbb2	chr15:44057581-44057798(+)$1	217	88	108	20.9700
[ccctttttttttttccc]c	chrX:130408661-130408948(-)$1	287	201	221	22.3426
hhhhyyyyyyyyyyyyyyyy	chr10:74770650-74770892(-)$1	242	169	189	18.9437
dddduuuuuuuuuuuudddd	chr8:11703070-11703326(-)$1	256	162	182	22.2638
ddddtttttttttttdddd:	chr19:6678350-6678564(-)$1	214	52	72	21.0699
eeeeuuuuuuuuuuuueeee	chr1:985199-985446(+)$1	247	23	43	22.4670
cccwwwwwwwwwwwwwwccc	chr19:44129129-44129446(-)$1	317	164	184	20.7722
eeeettttttttttteeeee	chr14:81953634-81953886(-)$1	252	42	62	21.9881
eeeettttttttttteeeee	chr2:21230572-21230789(-)$1	217	5	25	21.9881
ddddtttttttttttdddd:	chr3:49569290-49569532(+)$1	242	210	230	21.0699
cccwwwwwwwwwwwwwwccc	chr18:29116174-29116451(+)$1	277	246	266	20.7722
ddddwwwwwwwwwwwwwwdd	chr1:236195600-236195808(-)$1	208	76	96	20.6861
ddddtttttttttttdddd:	chr10:102107944-102108159(+)$1	215	179	199	21.0699
c[bbyyyyyyyyyyyyyyyy	chr3:186338360-186338570(+)$1	210	84	104	19.1967
ddddwwwwwwwwwwwwwwdd	chr1:1153815-1154081(-)$1	266	144	164	20.6861
ggggtttttttttttggggg	chr3:53126317-53126585(-)$1	268	131	151	21.8226
ddddvvvvvvvvvvvvvddd	chr14:94849216-94849422(-)$1	206	151	171	22.0886
ddddtttttttttttdddd:	chrX:132670097-132670301(-)$1	204	89	109	21.0699
ddddtttttttttttdddd]	chr8:124034849-124035111(-)$1	262	34	54	21.8915

#otherMatches

#Seq PSSM
AAGAUAAAUGUGUUCCUCUU	chr9:102778569-102778820(-)$1	251	167	187	22.4670
CGUUGCCACUUUCUUGCGAU	chr10:102116233-102116469(+)$1	236	148	168	21.4914
GGUUACCAAGGAGAUAAGAU	chr2:162868223-162868445(-)$1	222	60	80	21.5647
CCAUGCUGCAGUUAAGUGGG	chr19:19232313-19232559(-)$1	246	216	236	21.8226
CAGGUAAGAAGCAAAGCCCU	chr15:39885696-39885947(+)$1	251	170	190	22.3180
UCUGGCCCACAUCCAUUAUG	chr2:26609258-26609499(+)$1	241	115	135	20.8281
AGCCGUCUCGUCCUCAGGCU	chr17:76969025-76969258(-)$1	233	210	230	22.4670
AUACUCUUCUUUCAACCCGG	chr4:166405473-166405697(+)$1	224	161	181	18.1019
UUGGGAAGAACAACGCCAGC	chr14:24659686-24659926(-)$1	240	211	231	21.9976
GAGGGAAAUGUAAAAAUCUU	chr1:19566726-19567037(-)$1	311	42	62	22.3777
CCGCAACAGCUGCAAGCUGU	chr13:113803477-113803747(+)$1	270	44	64	21.2527
GUCCGCGCAGAACAGAAGGA	chr21:27327944-27328169(-)$1	225	133	153	22.3180
GGGAUUCUCUGGCUUUCCUC	chr17:6607177-6607434(-)$1	257	21	41	20.8348
UACUGGGAGAAUUUGAGAAG	chr12:58111902-58112156(+)$1	254	186	206	19.9010
GUGGGAAAAAAUGAAGCACA	chr2:85779495-85779737(-)$1	242	219	239	21.0944
ACAGUCCCUGCUCACCCUGG	chr12:7295658-7295873(+)$1	215	117	137	22.6092
GGGGGAGCUCACCCACCCCA	chr6:29798055-29798287(+)$1	232	190	210	21.9881
CAGUUGUUAGAUUUUACUCA	chr2:187532311-187532579(+)$1	268	197	217	22.4520
GCCCAGAGGACUAACAGGGC	chr17:42427776-42428012(+)$1	236	147	167	22.3777
CCUACAAUUCUUCUUUGGGC	chr4:74307968-74308188(+)$1	220	87	107	21.8915
AGAGAGGAUCACAGAGUUCU	chr17:79804286-79804549(-)$1	263	196	216	22.3777
GGCCAUGAAUGAAAAGGUUA	chr12:50155386-50155632(+)$1	246	160	180	21.1461
CUGGACUAUCACCUUAACCA	chr17:1680614-1680846(+)$1	232	24	44	22.3180
CCUUUCUUCUCUCCCUAGUC	chr19:10394629-10394852(+)$1	223	61	81	20.7423
CAGGUGAGUCUUUUAACCCU	chr3:133486901-133487108(+)$1	207	104	124	22.3180
UCAGAAGAGCGAGCCCCUGA	chr2:216238008-216238231(-)$1	223	149	169	22.3777
GCCCAUUAAGGUACCUGGUG	chr10:73581533-73581734(-)$1	201	92	112	21.9161
CAUCGACCGUAAAAAGAACA	chr10:114184995-114185216(+)$1	221	117	137	20.7577
CCAGACCAUCCUAUACUGUG	chr7:6505622-6505851(-)$1	229	103	123	22.2204
UCUGGUCUAUUACAUCGUCA	chr9:123779820-123780033(-)$1	213	16	36	19.2709
CUCCCCUCAUCCCCAUGGAG	chr5:151043625-151043896(-)$1	271	135	155	21.6581
GUGUGAAGGAGAAGGGACAC	chr3:9982433-9982754(+)$1	321	143	163	22.2638
UCUGUGGAAUUUUAUCAGAA	chr20:3562774-3563023(+)$1	249	137	157	21.9881
CUCGUGAGUACAGGGGUUGG	chr11:62402195-62402425(-)$1	230	130	150	22.2277
AUGAUCAAUUGAAUUUCAAG	chr3:133475574-133475780(+)$1	206	20	40	22.1336
CCGCUGGAUCAACGAUGUGG	chr1:116943421-116943645(+)$1	224	164	184	22.2638
UGUGUUUAAUAUUUUCUGUA	chr15:44055189-44055432(+)$1	243	62	82	20.2551
UCACAUCUCACUAACAAGUU	chr15:44057581-44057798(+)$1	217	88	108	20.9700
GUCCUAGAACAUGAUGGAGA	chrX:130408661-130408948(-)$1	287	201	221	22.3426
AGCCUGUUUGUUUUGUUUUU	chr10:74770650-74770892(-)$1	242	169	189	18.9437
UGGCUGCCCCCUUCCUGCCA	chr8:11703070-11703326(-)$1	256	162	182	22.2638
UGGUCAACCUAGCCCACCAC	chr19:6678350-6678564(-)$1	214	52	72	21.0699
GGCGGUACCCAACCGACGCC	chr1:985199-985446(+)$1	247	23	43	22.4670
GGCGUCCAAUAAGCACGGCC	chr19:44129129-44129446(-)$1	317	164	184	20.7722
AAGUAUUUUAAUUUAGCUUC	chr14:81953634-81953886(-)$1	252	42	62	21.9881
CUUGAAAUUCAAUCACAAGU	chr2:21230572-21230789(-)$1	217	5	25	21.9881
GUCAGACACUUUCUAUGACC	chr3:49569290-49569532(+)$1	242	210	230	21.0699
AUCUAAAUAUUAAGCAUGAU	chr18:29116174-29116451(+)$1	277	246	266	20.7722
GGACGGAUUCAAGAAUGGGU	chr1:236195600-236195808(-)$1	208	76	96	20.6861
CCUGACCUAGUCCUCCAGGU	chr10:102107944-102108159(+)$1	215	179	199	21.0699
CACCUCCGUCCCCUCCACUU	chr3:186338360-186338570(+)$1	210	84	104	19.1967
CCAGGACAUUGACGACAACU	chr1:1153815-1154081(-)$1	266	144	164	20.6861
UGGCCUGCACCUAUCGCCAG	chr3:53126317-53126585(-)$1	268	131	151	21.8226
GAGGGCCUGAAUUUCAACCU	chr14:94849216-94849422(-)$1	206	151	171	22.0886
GCUGAAGCUUCUCACCAGCA	chrX:132670097-132670301(-)$1	204	89	109	21.0699
GUACACCUUUUUUAAGUGCC	chr8:124034849-124035111(-)$1	262	34	54	21.8915

#DB
((((............))))	chr9:102778569-102778820(-)$1	1	167	187	22.4670
(((............)))))	chr10:102116233-102116469(+)$1	1	148	168	21.4914
((((.............)))	chr2:162868223-162868445(-)$1	1	60	80	21.5647
((((...........)))))	chr19:19232313-19232559(-)$1	1	216	236	21.8226
((((.............)))	chr15:39885696-39885947(+)$1	1	170	190	22.3180
((((..............))	chr2:26609258-26609499(+)$1	1	115	135	20.8281
((((............))))	chr17:76969025-76969258(-)$1	1	210	230	22.4670
...............)))))	chr4:166405473-166405697(+)$1	1	161	181	18.1019
.(((...........)))))	chr14:24659686-24659926(-)$1	1	211	231	21.9976
((((............))))	chr1:19566726-19567037(-)$1	1	42	62	22.3777
(.((...........)).))	chr13:113803477-113803747(+)$1	1	44	64	21.2527
((((.............)))	chr21:27327944-27328169(-)$1	1	133	153	22.3180
((((..............))	chr17:6607177-6607434(-)$1	1	21	41	20.8348
..((..............))	chr12:58111902-58112156(+)$1	1	186	206	19.9010
(((.............))).	chr2:85779495-85779737(-)$1	1	219	239	21.0944
.(((............))))	chr12:7295658-7295873(+)$1	1	117	137	22.6092
((((...........)))))	chr6:29798055-29798287(+)$1	1	190	210	21.9881
.(((...........)))))	chr2:187532311-187532579(+)$1	1	197	217	22.4520
((((............))))	chr17:42427776-42428012(+)$1	1	147	167	22.3777
((((...........)))).	chr4:74307968-74308188(+)$1	1	87	107	21.8915
((((............))))	chr17:79804286-79804549(-)$1	1	196	216	22.3777
((((...........)))))	chr12:50155386-50155632(+)$1	1	160	180	21.1461
((((.............)))	chr17:1680614-1680846(+)$1	1	24	44	22.3180
.((.............))..	chr19:10394629-10394852(+)$1	1	61	81	20.7423
((((.............)))	chr3:133486901-133487108(+)$1	1	104	124	22.3180
((((............))))	chr2:216238008-216238231(-)$1	1	149	169	22.3777
(((.............))).	chr10:73581533-73581734(-)$1	1	92	112	21.9161
..((...........))..)	chr10:114184995-114185216(+)$1	1	117	137	20.7577
((((...........))).)	chr7:6505622-6505851(-)$1	1	103	123	22.2204
((((................	chr9:123779820-123780033(-)$1	1	16	36	19.2709
((((............))))	chr5:151043625-151043896(-)$1	1	135	155	21.6581
((((............))))	chr3:9982433-9982754(+)$1	1	143	163	22.2638
((((...........)))))	chr20:3562774-3563023(+)$1	1	137	157	21.9881
((((.............)))	chr11:62402195-62402425(-)$1	1	130	150	22.2277
.(((...........))).)	chr3:133475574-133475780(+)$1	1	20	40	22.1336
((((............))))	chr1:116943421-116943645(+)$1	1	164	184	22.2638
((((..............))	chr15:44055189-44055432(+)$1	1	62	82	20.2551
(.((.............)).	chr15:44057581-44057798(+)$1	1	88	108	20.9700
.(((...........))).)	chrX:130408661-130408948(-)$1	1	201	221	22.3426
((((................	chr10:74770650-74770892(-)$1	1	169	189	18.9437
((((............))))	chr8:11703070-11703326(-)$1	1	162	182	22.2638
((((...........)))).	chr19:6678350-6678564(-)$1	1	52	72	21.0699
((((............))))	chr1:985199-985446(+)$1	1	23	43	22.4670
(((..............)))	chr19:44129129-44129446(-)$1	1	164	184	20.7722
((((...........)))))	chr14:81953634-81953886(-)$1	1	42	62	21.9881
((((...........)))))	chr2:21230572-21230789(-)$1	1	5	25	21.9881
((((...........)))).	chr3:49569290-49569532(+)$1	1	210	230	21.0699
(((..............)))	chr18:29116174-29116451(+)$1	1	246	266	20.7722
((((..............))	chr1:236195600-236195808(-)$1	1	76	96	20.6861
((((...........)))).	chr10:102107944-102108159(+)$1	1	179	199	21.0699
(.((................	chr3:186338360-186338570(+)$1	1	84	104	19.1967
((((..............))	chr1:1153815-1154081(-)$1	1	144	164	20.6861
((((...........)))))	chr3:53126317-53126585(-)$1	1	131	151	21.8226
((((.............)))	chr14:94849216-94849422(-)$1	1	151	171	22.0886
((((...........)))).	chrX:132670097-132670301(-)$1	1	89	109	21.0699
((((...........)))).	chr8:124034849-124035111(-)$1	1	34	54	21.8915

#PSSM
d : 0.23	e : 0.21	g : 0.14	c : 0.10	f : 0.10	[ : 0.08	! : 0.03	y : 0.01	$ : 0.01	= : 0.01	h : 0.01	
d : 0.21	e : 0.19	c : 0.19	g : 0.14	f : 0.08	[ : 0.05	! : 0.03	y : 0.01	= : 0.01	b : 0.01	h : 0.01	
d : 0.21	e : 0.19	c : 0.19	g : 0.14	b : 0.10	f : 0.08	y : 0.01	= : 0.01	h : 0.01	
d : 0.21	e : 0.19	g : 0.14	c : 0.10	f : 0.08	b : 0.08	v : 0.05	w : 0.03	u : 0.01	y : 0.01	= : 0.01	h : 0.01	
t : 0.35	u : 0.23	v : 0.19	w : 0.14	y : 0.07	
t : 0.35	u : 0.23	v : 0.19	w : 0.14	y : 0.07	
t : 0.35	u : 0.23	v : 0.19	w : 0.14	y : 0.07	
t : 0.35	u : 0.23	v : 0.19	w : 0.14	y : 0.07	
t : 0.35	u : 0.23	v : 0.19	w : 0.14	y : 0.07	
t : 0.35	u : 0.23	v : 0.19	w : 0.14	y : 0.07	
t : 0.35	u : 0.23	v : 0.19	w : 0.14	y : 0.07	
t : 0.35	u : 0.23	v : 0.19	w : 0.14	y : 0.07	
t : 0.35	u : 0.23	v : 0.19	w : 0.14	y : 0.07	
t : 0.35	u : 0.23	v : 0.19	w : 0.14	y : 0.07	
t : 0.35	u : 0.23	v : 0.19	w : 0.14	y : 0.07	
u : 0.21	v : 0.19	w : 0.14	c : 0.12	d : 0.10	e : 0.07	y : 0.05	g : 0.03	b : 0.03	f : 0.01	
c : 0.17	d : 0.16	v : 0.14	w : 0.14	e : 0.12	g : 0.10	b : 0.05	y : 0.05	f : 0.03	
c : 0.21	e : 0.19	d : 0.17	g : 0.12	w : 0.10	f : 0.05	y : 0.05	b : 0.03	] : 0.01	2 : 0.01	
e : 0.23	d : 0.21	g : 0.14	c : 0.10	f : 0.07	] : 0.05	y : 0.05	= : 0.03	b : 0.03	i : 0.01	3 : 0.01	2 : 0.01	
e : 0.23	g : 0.16	d : 0.12	f : 0.08	: : 0.08	c : 0.07	] : 0.05	y : 0.05	= : 0.03	b : 0.03	i : 0.01	3 : 0.01	2 : 0.01	

#score	1203.5528692220123
#seq	56
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_UTR_m1_run1.txt

#BEAR
d^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr3:33132486-33132758(-)$1	272	143	171	34.3852
bb^^^^^^^^^^^^^^^^^^^^bb]ddd	chr19:47219717-47220039(-)$1	322	101	129	31.2408
^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr12:75896712-75897043(-)$1	331	249	277	34.7461
d!!a^^^^^^^^^^^^^^^^^^a22ddd	chr19:41828744-41829112(+)$1	368	80	108	31.3770
e^^^^^^^^^^^^^^^^^^^^^^^^^ee	chr19:7710773-7711088(+)$1	315	264	292	34.2708
f^^^^^^^^^^^^^^^^^^^^^^^ffff	chr2:85547407-85547700(-)$1	293	80	108	33.4456
^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr19:4390240-4390600(-)$1	360	111	139	34.8452
dddyyyyyyyyyyyyyyyydddd22eee	chr6:30692288-30692512(+)$1	224	136	164	22.4089
c^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr6:28123437-28123710(+)$1	273	96	124	34.5572
gggg^^^^^^^^^^^^^^^^^^gggggg	chr6:27223805-27224130(+)$1	325	233	261	29.3481
^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr4:71655674-71655933(+)$1	259	103	131	34.7461
^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr7:73609803-73610040(+)$1	237	187	215	34.8452
[cccyyyyyyyyyyyyyyyyccc]bbdd	chr9:134373141-134373396(+)$1	255	99	127	22.9300
"ccc^^^^^^^^^^^^^^^^^^^ccc33	chrX:64742364-64742630(-)$1	266	106	134	30.8442
iii^^^^^^^^^^^^^^^^^^^^^iiii	chr19:45912059-45912320(-)$1	261	92	120	31.9696
gg^^^^^^^^^^^^^^^^^^^^^ggggg	chr11:57585408-57585689(+)$1	281	48	76	32.3582
ccc^^^^^^^^^^^^^^^^^^^^^^ccc	chr6:97591193-97591599(-)$1	406	121	149	33.1439
eeeyyyyyyyyyyyyyyyyeeeee]ddd	chr12:49330038-49330304(-)$1	266	45	73	22.4014
^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr12:4412539-4412826(+)$1	287	112	140	34.8452
ddddyyyyyyyyyyyyyyyydddd]eee	chr8:103876164-103876432(-)$1	268	66	94	22.5867
^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr19:18280139-18280465(+)$1	326	103	131	34.8224
ddddyyyyyyyyyyyyyyyydddd]eee	chr8:103876233-103876462(-)$1	229	96	124	22.5867
dddyyyyyyyyyyyyyyyydddd22eee	chr6:30692312-30692542(+)$1	230	112	140	22.4089
^^^^^^^^^^^^^^^^^^^^^^a22ggg	chr19:54377747-54377977(+)$1	230	23	51	33.4180
e^^^^^^^^^^^^^^^^^^^^^eeeeed	chr6:28123543-28123860(+)$1	317	195	223	32.4494
^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr12:56991617-56991912(-)$1	295	56	84	34.7461
^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr12:4412479-4412739(+)$1	260	172	200	34.8452
^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:58054443-58054817(+)$1	374	147	175	34.0298
eeee^^^^^^^^^^^^^^^^^^eeeee]	chr12:49330104-49330384(-)$1	280	95	123	29.6294
eeee^^^^^^^^^^^^^^^^^^eeeee:	chr14:104151845-104152128(+)$1	283	184	212	28.7400
dddd^^^^^^^^^^^^^^^^^^^dddd:	chr5:41918338-41918669(+)$1	331	205	233	29.2534
h^^^^^^^^^^^^^^^^^^^^^^^^hhh	chr2:85547937-85548199(-)$1	262	179	207	33.5490
eeee^^^^^^^^^^^^^^^^^^eeeee3	chr19:48958124-48958415(+)$1	291	70	98	29.6182
ccc^^^^^^^^^^^^^^^^^^^^^^ccc	chr2:85546950-85547221(-)$1	271	32	60	33.1439
^^^^^^^^^^^^^^^^^^^^^^a22ggg	chr19:54377711-54377947(+)$1	236	59	87	33.4180
^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrX:122735093-122735448(-)$1	355	219	247	34.8452
ddddxxxxxxxxxxxxxxxdddd22ccc	chr7:149186707-149187063(-)$1	356	206	234	20.0400
e[bb^^^^^^^^^^^^^^^^^^^^^bbe	chr12:49330496-49330768(-)$1	272	46	74	31.0373
f^^^^^^^^^^^^^^^^^^^^^^fffff	chr15:44086579-44086870(+)$1	291	158	186	32.7471
^^^^^^^^^^^^^^^^^^^^^^^^^iii	chr9:116169955-116170306(-)$1	351	286	314	34.6489
c^^^^^^^^^^^^^^^^^^^^^^cccdd	chr17:26937529-26937805(-)$1	276	100	128	33.4643
e^^^^^^^^^^^^^^^^^^^^^^^eeee	chr5:112227519-112227848(-)$1	329	94	122	33.9794
^^^^^^^^^^^^^^^^^^^^^^bb]eee	chr1:67413154-67413472(+)$1	318	216	244	32.7529
c^^^^^^^^^^^^^^^^^^^^^^cccdd	chr17:26937612-26937937(-)$1	325	232	260	33.4643
:ccc^^^^^^^^^^^^^^^^^^ccc:::	chr1:151030966-151031259(-)$1	293	12	40	26.3313
h[cccxxxxxxxxxxxxxxxccc333hh	chr17:30808950-30809251(+)$1	301	262	290	20.5429
fffff[axxxxxxxxxxxxxxxafffff	chr12:49330365-49330666(-)$1	301	125	153	19.6399
a^^^^^^^^^^^^^^^^^^^^^a]eeee	chr11:6504389-6504832(+)$1	443	321	349	33.2011
fff^^^^^^^^^^^^^^^^^^^ffffff	chr6:32136671-32136960(-)$1	289	246	274	29.9742
^^^^^^^^^^^^^^^^^^^^^^a]dddd	chr20:35090668-35090947(+)$1	279	244	272	33.1893
^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr19:54378126-54378416(+)$1	290	85	113	34.4398

#otherMatches

#Seq PSSM
CUUACUCCCUUUAAGUUCUCGCUUUGGA	chr3:33132486-33132758(-)$1	272	143	171	34.3852
GACCCCGACCUACUAGAUUUCCUCUCAG	chr19:47219717-47220039(-)$1	322	101	129	31.2408
CAUUGCUUUCUACAUCUCUUUUUUCCAC	chr12:75896712-75897043(-)$1	331	249	277	34.7461
ccugucuccugccucugucuuucuuggu	chr19:41828744-41829112(+)$1	368	80	108	31.3770
GCCAUCCCCCACCCUACCAGCCACACCA	chr19:7710773-7711088(+)$1	315	264	292	34.2708
UUGCCCUUUUUCUCUCUCAUCACCAAAG	chr2:85547407-85547700(-)$1	293	80	108	33.4456
uucccuugucuuucucucugucucuccc	chr19:4390240-4390600(-)$1	360	111	139	34.8452
UGGUGCCCAUUCCAUUUGUCCAGUUAAU	chr6:30692288-30692512(+)$1	224	136	164	22.4089
AUCAUAAAUUCUUUCCCUAUAACAUUCC	chr6:28123437-28123710(+)$1	273	96	124	34.5572
CUGGUACUUCCAGCUUCCAACUCUAGGG	chr6:27223805-27224130(+)$1	325	233	261	29.3481
CUCUUAUCUCCCUUUUCUUUCUCCUGGG	chr4:71655674-71655933(+)$1	259	103	131	34.7461
UUUUUCCUUUGCUUUCUCUUUACUUUAG	chr7:73609803-73610040(+)$1	237	187	215	34.8452
CUGCUUUUCCUUCUCCCACUGCAAGCGG	chr9:134373141-134373396(+)$1	255	99	127	22.9300
ugaccuugcuuccucucuauccugucug	chrX:64742364-64742630(-)$1	266	106	134	30.8442
CUUUUCUUUUUUCCUCUUCUUCGUAGGG	chr19:45912059-45912320(-)$1	261	92	120	31.9696
ACAACCCACCACCCCCUUUACUCGUGCA	chr11:57585408-57585689(+)$1	281	48	76	32.3582
GCAUCCACUGGUUGUUUGUUUUUUCUGU	chr6:97591193-97591599(-)$1	406	121	149	33.1439
GGUGUUUCAUUCCAUUUCUGCCCACUCC	chr12:49330038-49330304(-)$1	266	45	73	22.4014
UUGUGUUUCUAUCUCGUCUUUACUUCCA	chr12:4412539-4412826(+)$1	287	112	140	34.8452
GCAGUUUUUCCUUUUUUCUUCUGCCGUC	chr8:103876164-103876432(-)$1	268	66	94	22.5867
cacccucuuucucuuuccuucccucccc	chr19:18280139-18280465(+)$1	326	103	131	34.8224
GCAGUUUUUCCUUUUUUCUUCUGCCGUC	chr8:103876233-103876462(-)$1	229	96	124	22.5867
UGGUGCCCAUUCCAUUUGUCCAGUUAAU	chr6:30692312-30692542(+)$1	230	112	140	22.4089
CCGUUCCCUCUCCAACCUCUUUGUUCUU	chr19:54377747-54377977(+)$1	230	23	51	33.4180
UUACCAUUCCUAGUUUCUUUGUACUUGA	chr6:28123543-28123860(+)$1	317	195	223	32.4494
CUUUCUUUUCCCACCUCCCACCCCCCAG	chr12:56991617-56991912(-)$1	295	56	84	34.7461
UUGUGUUUCUAUCUCGUCUUUACUUCCA	chr12:4412479-4412739(+)$1	260	172	200	34.8452
ucucucucuuccuguccucuaucucuuc	chr16:58054443-58054817(+)$1	374	147	175	34.0298
CCCAUUCACUUAACAGCUCUUUUGGGAU	chr12:49330104-49330384(-)$1	280	95	123	29.6294
CAGCUUCCCUUCUCUCUCCAGUGCUGCC	chr14:104151845-104152128(+)$1	283	184	212	28.7400
UCCCUAUCCACCCUCAGCUUUAUGGGAU	chr5:41918338-41918669(+)$1	331	205	233	29.2534
ACCAGUUAUCCAAUCACCAAAUCCAUGG	chr2:85547937-85548199(-)$1	262	179	207	33.5490
AAACAUUUCUUUUCUCCUUUUCGUUUUC	chr19:48958124-48958415(+)$1	291	70	98	29.6182
AGGUUUCUCUCCCUUCCUUCUUUCUCCU	chr2:85546950-85547221(-)$1	271	32	60	33.1439
CCGUUCCCUCUCCAACCUCUUUGUUCUU	chr19:54377711-54377947(+)$1	236	59	87	33.4180
uccuucUUCUCUAUCAAUAUAAUCACUU	chrX:122735093-122735448(-)$1	355	219	247	34.8452
CUGAUCCCCCAGUCUUGCCUCAGCCCAG	chr7:149186707-149187063(-)$1	356	206	234	20.0400
AUGCUUCCCUCCAUACUUUUUAUUUGCU	chr12:49330496-49330768(-)$1	272	46	74	31.0373
AGCCUCUGUGCUCCUUUCUUCUAUGCCC	chr15:44086579-44086870(+)$1	291	158	186	32.7471
UUAGUUCUAAUCUCACGuuuuguuuuua	chr9:116169955-116170306(-)$1	351	286	314	34.6489
AACCCCCUCCAUCGUCUACGUUAUCUGC	chr17:26937529-26937805(-)$1	276	100	128	33.4643
CUUCCucuuuuucuuucuucuccuguug	chr5:112227519-112227848(-)$1	329	94	122	33.9794
uguaaaucaauuaauaucaaccucccag	chr1:67413154-67413472(+)$1	318	216	244	32.7529
AACCCCCUCCAUCGUCUACGUUAUCUGC	chr17:26937612-26937937(-)$1	325	232	260	33.4643
AGCCUGUACAUCCUUCCUCCCUGGCACC	chr1:151030966-151031259(-)$1	293	12	40	26.3313
ACUGGCUUUUAUUUUCCUCUCCAAAAUC	chr17:30808950-30809251(+)$1	301	262	290	20.5429
UGAGGACUUUGCCUCUUCUCCUGCCUCA	chr12:49330365-49330666(-)$1	301	125	153	19.6399
CAUUCCUUCAUUCAAACUGCUAGAGAAA	chr11:6504389-6504832(+)$1	443	321	349	33.2011
UGGUCUUCUCUACCCCUCUACCCCACAU	chr6:32136671-32136960(-)$1	289	246	274	29.9742
CCCUCUCCCUUUUUCUGUCUUUGCCGGG	chr20:35090668-35090947(+)$1	279	244	272	33.1893
UCUUCUUUUUUCUCAUCUCUUUUCUGGG	chr19:54378126-54378416(+)$1	290	85	113	34.4398

#DB
(........................)))	chr3:33132486-33132758(-)$1	1	143	171	34.3852
((....................)).)))	chr19:47219717-47220039(-)$1	1	101	129	31.2408
.........................)))	chr12:75896712-75897043(-)$1	1	249	277	34.7461
(..(..................)..)))	chr19:41828744-41829112(+)$1	1	80	108	31.3770
(.........................))	chr19:7710773-7711088(+)$1	1	264	292	34.2708
(.......................))))	chr2:85547407-85547700(-)$1	1	80	108	33.4456
.........................)))	chr19:4390240-4390600(-)$1	1	111	139	34.8452
(((................))))..)))	chr6:30692288-30692512(+)$1	1	136	164	22.4089
(........................)))	chr6:28123437-28123710(+)$1	1	96	124	34.5572
((((..................))))))	chr6:27223805-27224130(+)$1	1	233	261	29.3481
.........................)))	chr4:71655674-71655933(+)$1	1	103	131	34.7461
.........................)))	chr7:73609803-73610040(+)$1	1	187	215	34.8452
.(((................))).))((	chr9:134373141-134373396(+)$1	1	99	127	22.9300
.(((...................)))..	chrX:64742364-64742630(-)$1	1	106	134	30.8442
(((.....................))))	chr19:45912059-45912320(-)$1	1	92	120	31.9696
((.....................)))))	chr11:57585408-57585689(+)$1	1	48	76	32.3582
(((......................)))	chr6:97591193-97591599(-)$1	1	121	149	33.1439
(((................))))).)))	chr12:49330038-49330304(-)$1	1	45	73	22.4014
.........................)))	chr12:4412539-4412826(+)$1	1	112	140	34.8452
((((................)))).)))	chr8:103876164-103876432(-)$1	1	66	94	22.5867
.........................)))	chr19:18280139-18280465(+)$1	1	103	131	34.8224
((((................)))).)))	chr8:103876233-103876462(-)$1	1	96	124	22.5867
(((................))))..)))	chr6:30692312-30692542(+)$1	1	112	140	22.4089
......................)..)))	chr19:54377747-54377977(+)$1	1	23	51	33.4180
(.....................))))))	chr6:28123543-28123860(+)$1	1	195	223	32.4494
.........................)))	chr12:56991617-56991912(-)$1	1	56	84	34.7461
.........................)))	chr12:4412479-4412739(+)$1	1	172	200	34.8452
............................	chr16:58054443-58054817(+)$1	1	147	175	34.0298
((((..................))))).	chr12:49330104-49330384(-)$1	1	95	123	29.6294
((((..................))))).	chr14:104151845-104152128(+)$1	1	184	212	28.7400
((((...................)))).	chr5:41918338-41918669(+)$1	1	205	233	29.2534
(........................)))	chr2:85547937-85548199(-)$1	1	179	207	33.5490
((((..................))))).	chr19:48958124-48958415(+)$1	1	70	98	29.6182
(((......................)))	chr2:85546950-85547221(-)$1	1	32	60	33.1439
......................)..)))	chr19:54377711-54377947(+)$1	1	59	87	33.4180
.........................)))	chrX:122735093-122735448(-)$1	1	219	247	34.8452
((((...............))))..)))	chr7:149186707-149187063(-)$1	1	206	234	20.0400
(.((.....................)))	chr12:49330496-49330768(-)$1	1	46	74	31.0373
(......................)))))	chr15:44086579-44086870(+)$1	1	158	186	32.7471
.........................)))	chr9:116169955-116170306(-)$1	1	286	314	34.6489
(......................)))))	chr17:26937529-26937805(-)$1	1	100	128	33.4643
(.......................))))	chr5:112227519-112227848(-)$1	1	94	122	33.9794
......................)).)))	chr1:67413154-67413472(+)$1	1	216	244	32.7529
(......................)))))	chr17:26937612-26937937(-)$1	1	232	260	33.4643
.(((..................)))...	chr1:151030966-151031259(-)$1	1	12	40	26.3313
(.(((...............)))...))	chr17:30808950-30809251(+)$1	1	262	290	20.5429
(((((.(...............))))))	chr12:49330365-49330666(-)$1	1	125	153	19.6399
(.....................).))))	chr11:6504389-6504832(+)$1	1	321	349	33.2011
(((...................))))))	chr6:32136671-32136960(-)$1	1	246	274	29.9742
......................).))))	chr20:35090668-35090947(+)$1	1	244	272	33.1893
.........................)))	chr19:54378126-54378416(+)$1	1	85	113	34.4398

#PSSM
^ : 0.31	d : 0.15	e : 0.15	c : 0.09	f : 0.07	g : 0.03	h : 0.03	b : 0.01	[ : 0.01	" : 0.01	i : 0.01	: : 0.01	a : 0.01	
^ : 0.52	d : 0.11	c : 0.09	e : 0.07	g : 0.03	[ : 0.03	f : 0.03	b : 0.01	! : 0.01	i : 0.01	
^ : 0.56	d : 0.11	c : 0.11	e : 0.07	f : 0.03	! : 0.01	g : 0.01	i : 0.01	b : 0.01	
^ : 0.64	c : 0.07	d : 0.07	y : 0.05	e : 0.05	a : 0.01	g : 0.01	b : 0.01	f : 0.01	
^ : 0.82	y : 0.11	x : 0.01	c : 0.01	f : 0.01	
^ : 0.82	y : 0.11	x : 0.03	[ : 0.01	
^ : 0.82	y : 0.11	x : 0.03	a : 0.01	
^ : 0.82	y : 0.11	x : 0.05	
^ : 0.82	y : 0.11	x : 0.05	
^ : 0.82	y : 0.11	x : 0.05	
^ : 0.82	y : 0.11	x : 0.05	
^ : 0.82	y : 0.11	x : 0.05	
^ : 0.82	y : 0.11	x : 0.05	
^ : 0.82	y : 0.11	x : 0.05	
^ : 0.82	y : 0.11	x : 0.05	
^ : 0.82	y : 0.11	x : 0.05	
^ : 0.82	y : 0.11	x : 0.05	
^ : 0.82	y : 0.11	x : 0.05	
^ : 0.82	y : 0.11	x : 0.05	
^ : 0.82	d : 0.05	y : 0.05	x : 0.03	e : 0.01	
^ : 0.82	d : 0.09	c : 0.03	e : 0.01	x : 0.01	
^ : 0.82	d : 0.09	c : 0.03	e : 0.01	x : 0.01	
^ : 0.54	a : 0.11	d : 0.09	e : 0.09	c : 0.05	b : 0.03	g : 0.01	f : 0.01	
^ : 0.43	2 : 0.11	e : 0.09	c : 0.07	] : 0.05	d : 0.05	f : 0.05	b : 0.03	g : 0.03	3 : 0.01	
^ : 0.37	2 : 0.11	e : 0.11	] : 0.09	f : 0.07	c : 0.07	g : 0.03	d : 0.03	b : 0.01	i : 0.01	3 : 0.01	
c : 0.23	e : 0.23	d : 0.17	f : 0.09	g : 0.07	^ : 0.03	b : 0.03	i : 0.03	h : 0.01	: : 0.01	3 : 0.01	
e : 0.25	d : 0.23	c : 0.17	f : 0.09	g : 0.07	i : 0.03	h : 0.03	3 : 0.01	^ : 0.01	b : 0.01	: : 0.01	
d : 0.23	e : 0.19	c : 0.17	f : 0.09	g : 0.07	: : 0.05	3 : 0.03	i : 0.03	h : 0.03	^ : 0.01	] : 0.01	

#score	1572.2540500606983
#seq	51
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_UTR_m3_run1.txt

#BEAR
iiiii####dddd"""dddd[========	chr1:182360365-182360645(-)$1	280	153	182	8.9253
c!!eeeee[ddddmmmmdddd]eeeeecc	chr1:36605517-36605782(-)$1	265	231	260	12.2684
!!dddd"""eeeeellleeeeedddd22d	chr14:24614087-24614383(-)$1	296	63	92	9.4695
ddd[ccc[eeeeemmmmeeeee]ccc444	chr6:29600529-29600820(-)$1	291	138	167	11.4356
fffff"""eeeeemmmmeeeee333ffff	chr2:99785765-99786040(-)$1	275	195	224	12.4109
##ccc!!ccccccmmmmccc]ccc22ccc	chr16:89812815-89813094(-)$1	279	88	117	11.8562
eeeeeeee[ddddmmmmdddd22eeeee]	chr11:62370235-62370515(-)$1	280	13	42	12.2132
gggggg!!eeeeemmmmeeeee]gggggg	chr16:22336484-22336741(+)$1	257	111	140	11.9987
fffff!!a!!ccclllccc22a]ffffff	chr3:47040299-47040605(+)$1	306	112	141	9.3426
ddddccc[a[cccmmmmccc]a22ccc]d	chr3:50326535-50326791(-)$1	256	88	117	11.8287
iiiiiiiibbcccmmmmccc]bb22iiii	chr2:27356056-27356324(-)$1	268	91	120	10.4042
gggggg[aeeeeemmmmeeeee]a]gggg	chr11:129765259-129765531(-)$1	272	56	85	11.7362
ggg!!a"""ddddmmmmdddd]a22gggg	chr11:67200396-67200672(+)$1	276	146	175	14.2361
ff[ccc"""ddddmmmmdddd]ccc22ff	chr12:56554066-56554300(+)$1	234	167	196	13.7351
bb[dddd!!ddddmmmmddddddddbb22	chr17:57889039-57889293(+)$1	254	215	244	10.9578
geeeee[a[ddddmmmmdddd]a333eee	chr1:39776567-39776876(+)$1	309	204	233	13.7809
###ccca!!ddddmmmmdddd22a]ccc4	chr11:47663783-47664041(-)$1	258	76	105	13.9182
e[ccc####ddddmmmmddddccceeeee	chr1:25570398-25570649(-)$1	251	172	201	13.8844
$$eeeee!!ddddnnnnndddd22eeeee	chr1:19439952-19440244(-)$1	292	233	262	9.3449
c[bb!!ccc[cccmmmmccc]ccc22bbc	chr4:26859741-26859985(+)$1	244	36	65	10.3389
[ffffff!!ddddmmmmddddffffff]d	chr2:61725788-61726065(-)$1	277	104	133	12.5351
bb!!ccc!!ddddmmmmdddd22ccc22b	chr11:62567546-62567794(-)$1	248	1	30	12.7154
eeee####bbcccmmmmccc22bb4444e	chr3:47037005-47037250(+)$1	245	198	227	11.0704
a!!bb"""a[ccclllccca]bb22a]ee	chr12:124144509-124144776(+)$1	267	223	252	9.6505
[dddd!!ccccccmmmmccc]ccc]dddd	chr22:42911763-42912136(-)$1	373	267	296	11.2810
dddbb####ddddoooooodddd333bb5	chr5:112889296-112889588(+)$1	292	163	192	9.2595
!!ccc####a[ccclllccc]a333ccc2	chr4:2935995-2936297(-)$1	302	52	81	11.4926
ggggdddd[ddddmmmmddddddddeeee	chr20:34064308-34064577(+)$1	269	30	59	11.5853
!!dddd"""ccclllcccdddd22ggggg	chr5:6602430-6602682(-)$1	252	90	119	9.9163
fffff####cccmmmmcccffffff]ccc	chr21:45742807-45743072(+)$1	265	115	144	9.8050
effffff[eeeeemmmmeeeee22fffff	chr22:22874258-22874545(-)$1	287	141	170	10.5626
[eeeeebb[ddddmmmmdddd22bb4444	chr6:126332286-126332553(+)$1	267	141	170	12.0595
[a[eeeee!!cccmmmmccc22eeeee]a	chr5:1264348-1264643(-)$1	295	208	237	11.1636
f[ccc[a"""ddddllldddd]a]ccc44	chr17:77078093-77078397(+)$1	304	188	217	11.8461
""ccc[cccddddmmmmdddd22ccc22c	chr22:20105392-20105651(+)$1	259	123	152	12.9440
ddddeeeee[cccmmmmccceeeee]ddd	chr16:10479865-10480134(+)$1	269	204	233	9.9976
ee####eeeee[ammmmaeeeee333eee	chr12:133237602-133237857(-)$1	255	42	71	10.6088
""eeeee"""cccmmmmccc333eeeee]	chr2:101622466-101622747(+)$1	281	120	149	12.4119
!dddd[ccc[cccmmmmccc]ccc]dddd	chr17:79532297-79532610(-)$1	313	93	122	10.9463
!!ccc####ddddmmmmddddccc22eee	chr16:67985943-67986220(-)$1	277	236	265	14.2569
b[gggggggddddmmmmdddd4444gggg	chr1:11889242-11889544(+)$1	302	262	291	12.8371
gggggdddd[cccmmmmccc22dddd333	chr17:17717782-17718037(-)$1	255	99	128	10.4067
ffffff"""ddddmmmmddddffffff]a	chr15:34652072-34652427(-)$1	355	139	168	13.0706
ddd[ccc[eeeeemmmmeeeee]ccc]dd	chr18:9593607-9593898(-)$1	291	40	69	11.2056
]eeeeebb[ddddmmmmdddd]bbggggg	chr11:118962819-118963056(+)$1	237	42	71	11.3479
=========ddddmmmmddddffffffpp	chr7:99755252-99755500(-)$1	248	194	223	10.7110
dddd[ccc[cccammmma]cccccc22dd	chr7:150745824-150746116(+)$1	292	195	224	10.2561
iiiiii!!eeeeemmmmeeeee]iiiiii	chr12:118456801-118457131(+)$1	330	5	34	12.0219
fffff"""ddddnnnnnddddffffff]e	chr1:94337489-94337740(-)$1	251	209	238	9.4908
ddddccc[eeeeemmmmeeeee]ccc]dd	chr15:63862673-63862930(+)$1	257	81	110	11.1494
ff[ccc"""ddddmmmmdddd333ccc]f	chr3:20227262-20227555(-)$1	293	193	222	14.7311

#otherMatches

#Seq PSSM
GCGCCCUGGGGCUCGCAGUGGUUUGUUUG	chr1:182360365-182360645(-)$1	280	153	182	8.9253
AUUUCUCACUAAACUCAUUUACUGGGAUG	chr1:36605517-36605782(-)$1	265	231	260	12.2684
CUGCUUGCCCUGGUUAAGCCAGAAGUCUG	chr14:24614087-24614383(-)$1	296	63	92	9.4695
CGGGCCUGGGGCCUUGAGGCCCGGGGAGA	chr6:29600529-29600820(-)$1	291	138	167	11.4356
AUAUAUGAUGGGUGGUAGCCUAAUUUGUA	chr2:99785765-99786040(-)$1	275	195	224	12.4109
UUGACCUCUGCUCUGGUGGGUCAGCUGUC	chr16:89812815-89813094(-)$1	279	88	117	11.8562
AGGAGGCCCCUCGGGACCGGGAAGGCUUG	chr11:62370235-62370515(-)$1	280	13	42	12.2132
GGGGCUUUGGGCUGGGAGGCCCCGGCUCC	chr16:22336484-22336741(+)$1	257	111	140	11.9987
UGGGGGCCCGACACAGUGUGAGACCCUGC	chr3:47040299-47040605(+)$1	306	112	141	9.3426
CUUGCCCGGGACCUUGAGGUGCGAGGGAC	chr3:50326535-50326791(-)$1	256	88	117	11.8287
GGAACCUGGCCAAGUGUUUGUGUUACAGG	chr2:27356056-27356324(-)$1	268	91	120	10.4042
CCAGACUCCUUGCGGGAGCGAGUGCGUCU	chr11:129765259-129765531(-)$1	272	56	85	11.7362
GGGAGGACAGCCCGAAGGGGCACGGCCUG	chr11:67200396-67200672(+)$1	276	146	175	14.2361
CCAGCCCAGCCCAGGAGUGGGAGGUCAGG	chr12:56554066-56554300(+)$1	234	167	196	13.7351
GUUGGUAGCUUACUUAGGUAAUACCACAU	chr17:57889039-57889293(+)$1	254	215	244	10.9578
UCAAGACAGUCCUUCUCAGGAGUUCUUCU	chr1:39776567-39776876(+)$1	309	204	233	13.7809
CCCAGCCGCUCAUGUACGUGAAAGUGCUC	chr11:47663783-47664041(-)$1	258	76	105	13.9182
UUCAGACGAUUAGGUGCCUAACUGGCAAA	chr1:25570398-25570649(-)$1	251	172	201	13.8844
CGCUGGUCAGAAUGCUGAGUUCAUGCUAG	chr1:19439952-19440244(-)$1	292	233	262	9.3449
acguaacacagcugaaaagugguggaauu	chr4:26859741-26859985(+)$1	244	36	65	10.3389
GAAAGCAAUUAUUUACAAGUGUGUUUUGU	chr2:61725788-61726065(-)$1	277	104	133	12.5351
GCUAAUGCAUCCUGACCAGGGCCCGUCUG	chr11:62567546-62567794(-)$1	248	1	30	12.7154
CUUCUUUACCAGCAGCGGCUCAGGGUUUG	chr3:47037005-47037250(+)$1	245	198	227	11.0704
UGCCUCCAGUGCUGAAAGCCAAGAAAAAG	chr12:124144509-124144776(+)$1	267	223	252	9.6505
ACAAAGCCUGCGAUUCUUUGCCAGAUUUG	chr22:42911763-42912136(-)$1	373	267	296	11.2810
GCAGAUACCAAGUCUUUAUGCUUCAUUCA	chr5:112889296-112889588(+)$1	292	163	192	9.2595
gaccggggacgcgcaggguggggggcggg	chr4:2935995-2936297(-)$1	302	52	81	11.4926
UCGGGCUGCAGCUGUCAAGCUCAGUGCCU	chr20:34064308-34064577(+)$1	269	30	59	11.5853
AGUAUGAACCAGAUUCUGCGUAAGUCAGU	chr5:6602430-6602682(-)$1	252	90	119	9.9163
UGGGUUUGAGGUGAGAGCUGCCCACGGAC	chr21:45742807-45743072(+)$1	265	115	144	9.8050
UUUUGCUCCUCUAAAACUAgagcuggcaa	chr22:22874258-22874545(-)$1	287	141	170	10.5626
AGAGGACCAGAUGAAAACAUUAGGGCCAA	chr6:126332286-126332553(+)$1	267	141	170	12.0595
GUGUGGGGCAGGCGACUGCCAAUCCCAAA	chr5:1264348-1264643(-)$1	295	208	237	11.1636
CACUGAGAAACAGGUGUCCUGCCCCGGCC	chr17:77078093-77078397(+)$1	304	188	217	11.8461
CGGCCCACUUGGGGCUCCCCACUAGUACG	chr22:20105392-20105651(+)$1	259	123	152	12.9440
CCGGAGGCCUCGGAGCGCCGGGCCUACCG	chr16:10479865-10480134(+)$1	269	204	233	9.9976
GGCACAGCUGGUGGCUCCCCAGCGCUCCU	chr12:133237602-133237857(-)$1	255	42	71	10.6088
CUCUUAAAAUGUGAAUUCAUCUGUUAAGC	chr2:101622466-101622747(+)$1	281	120	149	12.4119
CCCCCUGCCCCGGCACCCCGUGGCUGGGG	chr17:79532297-79532610(-)$1	313	93	122	10.9463
GGGGCUUUGACCUGAGCAGGUGCCGGUGC	chr16:67985943-67986220(-)$1	277	236	265	14.2569
UUGAGAGAUAUGGGAAUCUGUAGUCGUCU	chr1:11889242-11889544(+)$1	302	262	291	12.8371
AGGAGUCUGAGUGAGUGCACGGCAGGUUC	chr17:17717782-17718037(-)$1	255	99	128	10.4067
GGGGUGCUUAGUGGCUAUGCUCACCCCGC	chr15:34652072-34652427(-)$1	355	139	168	13.0706
GGAGUUUGCUCGAUACCUUGAGGGAAGUC	chr18:9593607-9593898(-)$1	291	40	69	11.2056
GCUGUGGGCCAGGUACACUUGACCAGGGA	chr11:118962819-118963056(+)$1	237	42	71	11.3479
GAUCUCCUGGGGAGACAUUCCGGGGCGAG	chr7:99755252-99755500(-)$1	248	194	223	10.7110
CAUCCGCGUGUUCGCCAGCAACUGCUCGA	chr7:150745824-150746116(+)$1	292	195	224	10.2561
AAGGAUUCUUUUGCACAUAAAAUAUUCUU	chr12:118456801-118457131(+)$1	330	5	34	12.0219
UCCAUUGUGCAUGCCUAAUGUAUGGAACA	chr1:94337489-94337740(-)$1	251	209	238	9.4908
GUCUGCAAGUAACAAGUGUUGCAUGUAAG	chr15:63862673-63862930(+)$1	257	81	110	11.1494
GCUCGGGCCGUGGAGUCCCACUCGCCGCG	chr3:20227262-20227555(-)$1	293	193	222	14.7311

#DB
(((((....((((...((((.((((((((	chr1:182360365-182360645(-)$1	1	153	182	8.9253
(..(((((.((((....)))).)))))))	chr1:36605517-36605782(-)$1	1	231	260	12.2684
..((((...(((((...)))))))))..)	chr14:24614087-24614383(-)$1	1	63	92	9.4695
(((.(((.(((((....))))).)))...	chr6:29600529-29600820(-)$1	1	138	167	11.4356
(((((...(((((....)))))...))))	chr2:99785765-99786040(-)$1	1	195	224	12.4109
..(((..((((((....))).)))..)))	chr16:89812815-89813094(-)$1	1	88	117	11.8562
((((((((.((((....))))..))))).	chr11:62370235-62370515(-)$1	1	13	42	12.2132
((((((..(((((....))))).))))))	chr16:22336484-22336741(+)$1	1	111	140	11.9987
(((((..(..(((...)))..).))))))	chr3:47040299-47040605(+)$1	1	112	141	9.3426
(((((((.(.(((....))).)..))).)	chr3:50326535-50326791(-)$1	1	88	117	11.8287
(((((((((((((....))).))..))))	chr2:27356056-27356324(-)$1	1	91	120	10.4042
((((((.((((((....))))).).))))	chr11:129765259-129765531(-)$1	1	56	85	11.7362
(((..(...((((....)))).)..))))	chr11:67200396-67200672(+)$1	1	146	175	14.2361
((.(((...((((....)))).)))..))	chr12:56554066-56554300(+)$1	1	167	196	13.7351
((.((((..((((....))))))))))..	chr17:57889039-57889293(+)$1	1	215	244	10.9578
((((((.(.((((....)))).)...)))	chr1:39776567-39776876(+)$1	1	204	233	13.7809
...((((..((((....))))..).))).	chr11:47663783-47664041(-)$1	1	76	105	13.9182
(.(((....((((....))))))))))))	chr1:25570398-25570649(-)$1	1	172	201	13.8844
..(((((..((((.....))))..)))))	chr1:19439952-19440244(-)$1	1	233	262	9.3449
(.((..(((.(((....))).)))..)))	chr4:26859741-26859985(+)$1	1	36	65	10.3389
.((((((..((((....)))))))))).)	chr2:61725788-61726065(-)$1	1	104	133	12.5351
((..(((..((((....))))..)))..)	chr11:62567546-62567794(-)$1	1	1	30	12.7154
((((....(((((....)))..))....)	chr3:47037005-47037250(+)$1	1	198	227	11.0704
(..((...(.(((...)))).))..).))	chr12:124144509-124144776(+)$1	1	223	252	9.6505
.((((..((((((....))).))).))))	chr22:42911763-42912136(-)$1	1	267	296	11.2810
(((((....((((......))))...)).	chr5:112889296-112889588(+)$1	1	163	192	9.2595
..(((....(.(((...))).)...))).	chr4:2935995-2936297(-)$1	1	52	81	11.4926
))))((((.((((....))))))))((((	chr20:34064308-34064577(+)$1	1	30	59	11.5853
..((((...(((...)))))))..)))))	chr5:6602430-6602682(-)$1	1	90	119	9.9163
(((((....(((....))))))))).)))	chr21:45742807-45743072(+)$1	1	115	144	9.8050
(((((((.(((((....)))))..)))))	chr22:22874258-22874545(-)$1	1	141	170	10.5626
.(((((((.((((....))))..))....	chr6:126332286-126332553(+)$1	1	141	170	12.0595
.(.(((((..(((....)))..))))).)	chr5:1264348-1264643(-)$1	1	208	237	11.1636
(.(((.(...((((...)))).).)))..	chr17:77078093-77078397(+)$1	1	188	217	11.8461
..(((.(((((((....))))..)))..)	chr22:20105392-20105651(+)$1	1	123	152	12.9440
(((((((((.(((....)))))))).)))	chr16:10479865-10480134(+)$1	1	204	233	9.9976
((....(((((.(....))))))...)))	chr12:133237602-133237857(-)$1	1	42	71	10.6088
..(((((...(((....)))...))))).	chr2:101622466-101622747(+)$1	1	120	149	12.4119
.((((.(((.(((....))).))).))))	chr17:79532297-79532610(-)$1	1	93	122	10.9463
..(((....((((....)))))))..)))	chr16:67985943-67986220(-)$1	1	236	265	14.2569
(.(((((((((((....))))....))))	chr1:11889242-11889544(+)$1	1	262	291	12.8371
(((((((((.(((....)))..))))...	chr17:17717782-17718037(-)$1	1	99	128	10.4067
((((((...((((....)))))))))).)	chr15:34652072-34652427(-)$1	1	139	168	13.0706
(((.(((.(((((....))))).))).))	chr18:9593607-9593898(-)$1	1	40	69	11.2056
.)))))((.((((....)))).))(((((	chr11:118962819-118963056(+)$1	1	42	71	11.3479
)))))))))((((....))))((((((..	chr7:99755252-99755500(-)$1	1	194	223	10.7110
((((.(((.((((....).))))))..))	chr7:150745824-150746116(+)$1	1	195	224	10.2561
((((((..(((((....))))).))))))	chr12:118456801-118457131(+)$1	1	5	34	12.0219
(((((...((((.....)))))))))).)	chr1:94337489-94337740(-)$1	1	209	238	9.4908
(((((((.(((((....))))).))).))	chr15:63862673-63862930(+)$1	1	81	110	11.1494
((.(((...((((....))))...))).)	chr3:20227262-20227555(-)$1	1	193	222	14.7311

#PSSM
f : 0.15	d : 0.13	g : 0.11	! : 0.09	e : 0.09	[ : 0.07	i : 0.05	b : 0.05	c : 0.03	# : 0.03	" : 0.03	$ : 0.01	a : 0.01	] : 0.01	= : 0.01	
d : 0.17	f : 0.17	! : 0.11	e : 0.11	g : 0.09	[ : 0.07	i : 0.05	# : 0.03	b : 0.03	" : 0.03	$ : 0.01	a : 0.01	= : 0.01	
d : 0.21	f : 0.13	e : 0.13	c : 0.11	g : 0.11	[ : 0.07	i : 0.05	! : 0.05	# : 0.03	b : 0.01	= : 0.01	
e : 0.17	d : 0.17	c : 0.17	f : 0.13	g : 0.09	i : 0.05	b : 0.05	[ : 0.03	! : 0.03	# : 0.01	= : 0.01	
c : 0.27	e : 0.17	f : 0.13	d : 0.11	g : 0.07	i : 0.05	! : 0.03	# : 0.03	b : 0.03	= : 0.01	[ : 0.01	
e : 0.17	c : 0.17	# : 0.15	d : 0.09	! : 0.07	" : 0.05	g : 0.05	f : 0.05	[ : 0.05	i : 0.03	a : 0.01	= : 0.01	
" : 0.17	c : 0.17	# : 0.13	e : 0.13	! : 0.09	d : 0.05	[ : 0.03	a : 0.03	f : 0.03	b : 0.03	i : 0.01	g : 0.01	= : 0.01	
" : 0.21	# : 0.13	! : 0.13	c : 0.11	e : 0.09	[ : 0.09	a : 0.05	d : 0.03	b : 0.03	i : 0.01	g : 0.01	= : 0.01	
e : 0.19	" : 0.15	[ : 0.13	! : 0.13	# : 0.11	c : 0.09	a : 0.03	b : 0.03	d : 0.03	g : 0.01	= : 0.01	
d : 0.45	e : 0.19	[ : 0.11	c : 0.09	! : 0.03	b : 0.03	" : 0.03	a : 0.01	
d : 0.47	c : 0.31	e : 0.19	[ : 0.01	
d : 0.47	c : 0.33	e : 0.17	[ : 0.01	
d : 0.45	c : 0.27	e : 0.17	a : 0.03	l : 0.01	m : 0.01	n : 0.01	
m : 0.80	l : 0.05	n : 0.03	" : 0.01	e : 0.01	o : 0.01	c : 0.01	d : 0.01	
m : 0.80	l : 0.11	n : 0.03	" : 0.01	o : 0.01	
m : 0.80	l : 0.09	n : 0.03	" : 0.01	o : 0.01	c : 0.01	
m : 0.78	c : 0.07	l : 0.05	n : 0.03	d : 0.01	o : 0.01	
d : 0.43	c : 0.31	e : 0.17	a : 0.03	n : 0.01	o : 0.01	
d : 0.47	c : 0.29	e : 0.19	o : 0.01	] : 0.01	
d : 0.49	c : 0.25	e : 0.19	2 : 0.01	a : 0.01	f : 0.01	
d : 0.47	e : 0.21	] : 0.15	2 : 0.07	[ : 0.01	f : 0.01	3 : 0.01	c : 0.01	
e : 0.21	2 : 0.15	c : 0.13	] : 0.11	d : 0.09	f : 0.09	a : 0.05	b : 0.03	3 : 0.03	= : 0.01	4 : 0.01	
2 : 0.17	c : 0.15	] : 0.13	d : 0.09	f : 0.09	e : 0.07	3 : 0.07	b : 0.07	a : 0.05	= : 0.01	4 : 0.01	
c : 0.25	2 : 0.13	3 : 0.11	f : 0.11	e : 0.09	d : 0.07	b : 0.05	a : 0.03	= : 0.01	g : 0.01	] : 0.01	4 : 0.01	i : 0.01	
c : 0.19	e : 0.13	f : 0.13	2 : 0.11	3 : 0.09	d : 0.07	] : 0.07	g : 0.05	4 : 0.03	= : 0.01	b : 0.01	i : 0.01	
c : 0.19	e : 0.13	f : 0.13	g : 0.11	2 : 0.09	d : 0.07	3 : 0.05	i : 0.03	4 : 0.03	] : 0.03	= : 0.01	b : 0.01	a : 0.01	
e : 0.19	f : 0.13	c : 0.13	g : 0.11	2 : 0.09	4 : 0.05	b : 0.05	] : 0.05	d : 0.05	i : 0.03	= : 0.01	3 : 0.01	
e : 0.17	g : 0.11	] : 0.11	d : 0.11	c : 0.09	2 : 0.07	4 : 0.07	f : 0.07	i : 0.03	b : 0.03	= : 0.01	3 : 0.01	p : 0.01	
d : 0.17	e : 0.17	g : 0.11	c : 0.09	f : 0.09	4 : 0.07	] : 0.03	i : 0.03	2 : 0.03	a : 0.03	= : 0.01	b : 0.01	5 : 0.01	3 : 0.01	p : 0.01	

#score	587.4251661760142
#seq	51
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_UTR_m1_run1.txt

#BEAR
ggggg!!bb"""eeeeexxxxxxxxxxxxxxxeeeee333	chr20:4680623-4680876(+)$1	253	53	93	19.1132
eeeee%%%%%%dddd[bb[cccnnnnnccc]bbdddd444	chr9:19378798-19379017(-)$1	219	47	87	21.8116
======[bb[bba[eeeee[ddddllldddd]eeeee]a]	chr9:19378759-19378973(-)$1	214	8	48	11.9585
=====%%%%%%ccc[ccc[cccmmmmccc]cccccc====	chr2:130940203-130940441(+)$1	238	74	114	17.3567
eeeee%%%%%%ccceeeee[ddddmmmmddddeeeee]cc	chr12:56705047-56705257(-)$1	210	30	70	19.8012
eeeee%%%%%%ccceeeee[ddddmmmmddddeeeee]cc	chr12:56705018-56705243(-)$1	225	16	56	19.8012
eeeee%%%%%%dddd[bb[cccnnnnnccc]bbdddd444	chr9:19378781-19378998(-)$1	217	28	68	21.8116
iiiii%%%%%%eeeeecccssssssssssccc]eeeee]i	chr6:4115960-4116233(-)$1	273	91	131	19.2799
hhhhh%%%%%%aeeeeeyyyyyyyyyyyyyyyyeeeee]a	chr7:2704298-2704512(+)$1	214	37	77	20.0340
eeeee####ffffff^^^^^^^^^^^^^^^^^^ffffff]	chr9:19378745-19378959(-)$1	214	158	198	14.3739
eeeee%%%%%%dddd[bb[cccnnnnnccc]bbdddd444	chr9:19378773-19378978(-)$1	205	8	48	21.8116

#otherMatches

#Seq PSSM
GGGAGGCGGUAUCCACCUGCAGCCCUUUUAGUGGUGGUGU	chr20:4680623-4680876(+)$1	253	53	93	19.1132
GUAUAAUUUUGGAAUAGAAAUAGUAAAUGUGUCAUUCAUU	chr9:19378798-19379017(-)$1	219	47	87	21.8116
AUUUUGGAAUAGAAAUAGUAAAUGUGUCAUUCAUUGUAUG	chr9:19378759-19378973(-)$1	214	8	48	11.9585
GAGGCUAGCGAGCGAGCCCCAGGACCCUGCGGCCGUGUCU	chr2:130940203-130940441(+)$1	238	74	114	17.3567
GAGUGACCCAAGGCUGAGGACAUUUCUAGGUGCCUUAUGC	chr12:56705047-56705257(-)$1	210	30	70	19.8012
GAGUGACCCAAGGCUGAGGACAUUUCUAGGUGCCUUAUGC	chr12:56705018-56705243(-)$1	225	16	56	19.8012
GUAUAAUUUUGGAAUAGAAAUAGUAAAUGUGUCAUUCAUU	chr9:19378781-19378998(-)$1	217	28	68	21.8116
UGGUGAACUUCUUAUCCAGAAAAUCAAAACUGUGAUGACC	chr6:4115960-4116233(-)$1	273	91	131	19.2799
GGGCUUUUUUUCUUGGCAAAUACUAAAAAUCUCGUCAAUG	chr7:2704298-2704512(+)$1	214	37	77	20.0340
GACCAAGGAGAACUGGAGAAAGAAAGAGAAAAUCAGUUCG	chr9:19378745-19378959(-)$1	214	158	198	14.3739
GUAUAAUUUUGGAAUAGAAAUAGUAAAUGUGUCAUUCAUU	chr9:19378773-19378978(-)$1	205	8	48	21.8116

#DB
(((((..((...(((((...............)))))...	chr20:4680623-4680876(+)$1	1	53	93	19.1132
(((((......((((.((.(((.....))).))))))...	chr9:19378798-19379017(-)$1	1	47	87	21.8116
((((((.((.(((.(((((.((((...)))).))))).).	chr9:19378759-19378973(-)$1	1	8	48	11.9585
(((((......(((.(((.(((....))).))))))))))	chr2:130940203-130940441(+)$1	1	74	114	17.3567
(((((......((((((((.((((....))))))))).))	chr12:56705047-56705257(-)$1	1	30	70	19.8012
(((((......((((((((.((((....))))))))).))	chr12:56705018-56705243(-)$1	1	16	56	19.8012
(((((......((((.((.(((.....))).))))))...	chr9:19378781-19378998(-)$1	1	28	68	21.8116
(((((......((((((((..........))).))))).)	chr6:4115960-4116233(-)$1	1	91	131	19.2799
(((((......((((((................))))).)	chr7:2704298-2704512(+)$1	1	37	77	20.0340
(((((....((((((..................)))))).	chr9:19378745-19378959(-)$1	1	158	198	14.3739
(((((......((((.((.(((.....))).))))))...	chr9:19378773-19378978(-)$1	1	8	48	21.8116

#PSSM
e : 0.54	= : 0.18	g : 0.09	i : 0.09	h : 0.09	
e : 0.54	= : 0.18	g : 0.09	i : 0.09	h : 0.09	
e : 0.54	= : 0.18	g : 0.09	i : 0.09	h : 0.09	
e : 0.54	= : 0.18	g : 0.09	i : 0.09	h : 0.09	
e : 0.54	= : 0.18	g : 0.09	i : 0.09	h : 0.09	
% : 0.72	! : 0.09	= : 0.09	# : 0.09	
% : 0.72	! : 0.09	[ : 0.09	# : 0.09	
% : 0.72	b : 0.18	# : 0.09	
% : 0.72	b : 0.18	# : 0.09	
% : 0.72	" : 0.09	[ : 0.09	f : 0.09	
% : 0.72	" : 0.09	b : 0.09	f : 0.09	
d : 0.27	c : 0.27	" : 0.09	b : 0.09	e : 0.09	a : 0.09	f : 0.09	
e : 0.27	d : 0.27	c : 0.27	a : 0.09	f : 0.09	
e : 0.27	d : 0.27	c : 0.27	[ : 0.09	f : 0.09	
e : 0.54	d : 0.27	[ : 0.09	f : 0.09	
e : 0.54	[ : 0.27	c : 0.09	^ : 0.09	
e : 0.45	b : 0.27	c : 0.18	^ : 0.09	
b : 0.27	e : 0.27	c : 0.18	x : 0.09	y : 0.09	^ : 0.09	
[ : 0.36	e : 0.27	x : 0.09	c : 0.09	y : 0.09	^ : 0.09	
c : 0.36	[ : 0.27	x : 0.09	s : 0.09	y : 0.09	^ : 0.09	
c : 0.36	d : 0.27	x : 0.09	s : 0.09	y : 0.09	^ : 0.09	
c : 0.36	d : 0.27	x : 0.09	s : 0.09	y : 0.09	^ : 0.09	
n : 0.27	d : 0.27	x : 0.09	m : 0.09	s : 0.09	y : 0.09	^ : 0.09	
n : 0.27	d : 0.27	x : 0.09	m : 0.09	s : 0.09	y : 0.09	^ : 0.09	
n : 0.27	m : 0.27	x : 0.09	l : 0.09	s : 0.09	y : 0.09	^ : 0.09	
n : 0.27	m : 0.27	x : 0.09	l : 0.09	s : 0.09	y : 0.09	^ : 0.09	
n : 0.27	m : 0.18	x : 0.09	l : 0.09	c : 0.09	s : 0.09	y : 0.09	^ : 0.09	
c : 0.36	m : 0.18	x : 0.09	d : 0.09	s : 0.09	y : 0.09	^ : 0.09	
c : 0.36	d : 0.27	x : 0.09	s : 0.09	y : 0.09	^ : 0.09	
c : 0.36	d : 0.27	x : 0.09	] : 0.09	y : 0.09	^ : 0.09	
] : 0.27	d : 0.27	c : 0.18	x : 0.09	y : 0.09	^ : 0.09	
b : 0.27	c : 0.18	d : 0.18	x : 0.09	] : 0.09	y : 0.09	^ : 0.09	
e : 0.36	b : 0.27	c : 0.09	] : 0.09	y : 0.09	^ : 0.09	
e : 0.54	d : 0.27	c : 0.09	f : 0.09	
e : 0.54	d : 0.27	c : 0.09	f : 0.09	
e : 0.54	d : 0.27	c : 0.09	f : 0.09	
e : 0.54	d : 0.27	= : 0.09	f : 0.09	
4 : 0.27	] : 0.27	e : 0.18	3 : 0.09	= : 0.09	f : 0.09	
4 : 0.27	c : 0.18	] : 0.18	3 : 0.09	a : 0.09	= : 0.09	f : 0.09	
4 : 0.27	] : 0.18	c : 0.18	3 : 0.09	= : 0.09	i : 0.09	a : 0.09	

#score	207.15399271940916
#seq	11
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_transcript_m2_run2.txt

#BEAR
dddccc####cccooooooccc333cccFFF	chr1:47683188-47683471(-)$1	283	105	136	14.4642
hhhhhhhh!!cccooooooccc4444hhhhh	chr5:137523658-137523917(-)$1	259	212	243	14.0502
!ccc"""eeeeebboooooobb]eeeee333	chr2:170497220-170497465(+)$1	245	135	166	12.1763
[ccc!!ccc[cccooooooccc]ccc22ccc	chr17:64793979-64794254(+)$1	275	126	157	14.7800
hhh!!ccc!!cccooooooccc22ccc22hh	chr3:33909644-33909940(+)$1	296	72	103	14.9518
ggggggg[eeeeeooooooeeeeeggggggg	chr12:70748126-70748402(+)$1	276	145	176	14.2371
ccc[iiiiiiiiiooooooiiiiiiiii]cc	chr5:96365845-96366091(+)$1	246	68	99	15.3379
eeeee####ddddoooooodddd4444eeee	chr9:136229695-136229932(-)$1	237	116	147	14.1205
ggggggg"""ddddmmmmdddd333gggggg	chr16:88850455-88850743(-)$1	288	44	75	11.8678
e!!ccc"""ddddoooooodddd22ccc]ee	chr22:49974624-49974918(-)$1	294	215	246	15.1623
ddd####ffffffooooooffffffdddd]d	chr7:44252167-44252412(+)$1	245	190	221	11.7481
iiiiggggggg[aooooooa]ggggggg:ee	chr7:150078980-150079299(+)$1	319	130	161	13.7547
gggggdddd[a!!aooooooa22a]dddd22	chr16:89018874-89019153(-)$1	279	240	271	12.7608
d$$$$$ccc[cccooooooccccccdddd22	chr1:153779629-153779928(-)$1	299	13	44	13.4957
d============oooooo============	chr11:118621560-118621808(-)$1	248	13	44	16.5857
eeee!!bb[ddddoooooodddd]bb22eee	chr19:47280580-47280856(-)$1	276	130	161	12.8711
"ggggggg[ddddooooooddddggggggg3	chr3:170021351-170021638(+)$1	287	39	70	15.3084
=====[dddd[bboooooobb22dddd====	chr4:76568958-76569224(-)$1	266	193	224	13.6538
gggggg####ddddmmmmdddd4444ggggg	chr17:7215533-7215797(+)$1	264	141	172	11.1821
iiiiiiiii[cccrrrrrrrrrccciiiiii	chr4:76568467-76568763(-)$1	296	195	226	11.2433
dddd[bb"""cccooooooccc333bb]ddd	chr1:24796919-24797154(+)$1	235	22	53	14.8145
ccc"""bb[ddddoooooodddd333bb333	chr11:62482194-62482442(-)$1	248	36	67	15.2057
b[ggggggg[ccclllccc333ggggggg22	chr15:89743928-89744156(+)$1	228	168	199	10.6081
="""ccc!!ddddoooooodddd333ccc]=	chr17:45197016-45197277(-)$1	261	115	146	16.1340
bb[a####eeeeeooooooeeeee22a]bb]	chr16:90074892-90075139(-)$1	247	60	91	13.0574
=====[ddddcccooooooccc333dddd]=	chr12:133393415-133393762(-)$1	347	171	202	15.6698
===========rrrrrrrrr===========	chr11:74552133-74552373(+)$1	240	15	46	12.0323
hh####gggggggooooooggggggg66666	chr19:42752572-42752836(-)$1	264	139	170	12.0928
iiii[bb"""cccooooooccc333bb]iii	chr11:60658251-60658512(-)$1	261	198	229	16.5325
c"""dddd[ddddoooooodddd]dddd333	chr6:163989185-163989437(+)$1	252	25	56	14.2932
ggggggg"""ddddnnnnnddddgggggggb	chr17:37075363-37075615(+)$1	252	31	62	11.1780
ccc[eeeee!!bboooooobb22eeeeeccc	chr1:27731759-27731988(-)$1	229	31	62	12.8891
fffff[gggggggooooooggggggg]ffff	chr12:46753967-46754324(-)$1	357	214	245	13.2961
dd[bb[gggggggooooooggggggg]bbdd	chr1:1157851-1158143(-)$1	292	19	50	13.0739
iiiiiiii"""bboooooobb333iiiiiii	chr3:44966607-44966961(-)$1	354	142	173	16.2943
h!!bb[bb[a[bboooooobb22a]bb]bb2	chr12:52389006-52389234(+)$1	228	9	40	12.8993
e!!eeeeebbcccooooooccc]bb]eeeee	chr8:104411155-104411428(-)$1	273	86	117	12.8438
$$eeeee!!ddddooooooddddeeeeebb]	chr2:37324188-37324493(+)$1	305	227	258	12.7630
###eeeee"""cccnnnnnccc333eeeee4	chr12:118469427-118469691(+)$1	264	17	48	11.1445
b!!ccc!!ddddoooooodddd4444ccc22	chr10:99433484-99433758(+)$1	274	96	127	13.7172
gggggg!!eeeeeooooooeeeee22ggggg	chr17:45761103-45761329(+)$1	226	119	150	14.2236
g!!ffffff"""aooooooa333ffffff]g	chr11:64895151-64895392(-)$1	241	135	166	13.8634
ff[==========oooooo==========ff	chr14:105628781-105629086(-)$1	305	239	270	15.9923
[==============nnnnn===========	chr19:1592241-1592492(-)$1	251	83	114	11.8582
ff[==========oooooo==========ff	chr14:105628722-105628981(-)$1	259	134	165	15.9923
hh[dddd[eeeeeooooooeeeeeddddhhh	chr20:31437053-31437302(+)$1	249	177	208	11.8929
dd[cccgggggggooooooggggggg333cc	chr7:26252691-26252956(+)$1	265	214	245	14.4094
c"""iiiiiiiiiooooooiiiiiiiii333	chr22:39096014-39096294(-)$1	280	74	105	16.1957
ccc!!ccc"""ddddllldddd333ccc22c	chr18:32912541-32912861(-)$1	320	278	309	11.4282
g[ccc!!a!!ccclllccc22a22cccgggg	chr19:3053612-3053828(-)$1	216	86	117	10.7960
dd[a[bb!!ddddoooooodddd22bb]add	chr5:154194034-154194270(+)$1	236	73	104	13.9098
!!ggggggg[cccooooooccc]ggggggg]	chr7:135612966-135613228(-)$1	262	89	120	16.1578
b[dddd[bb!!bboooooobb22bb]dddd]	chr19:49407267-49407588(+)$1	321	21	52	11.8569

#otherMatches

#Seq PSSM
UCUGGCUCCCUCUUCUUUCAGACUUGCCAUG	chr1:47683188-47683471(-)$1	283	105	136	14.4642
ACAGCAGGAGGUAAUAUGCUAUAAUGUCUGC	chr5:137523658-137523917(-)$1	259	212	243	14.0502
GCCUAUUGUGUGACAAAGAGGUAUAUAUUAA	chr2:170497220-170497465(+)$1	245	135	166	12.1763
AGGCCAUGGACAGCCACACCUGCCCGCUGUC	chr17:64793979-64794254(+)$1	275	126	157	14.7800
UUUAUACUAACAUAAGACAGUGAGAGUUAGA	chr3:33909644-33909940(+)$1	296	72	103	14.9518
cacaaucucuggaugguuUUCCAGGGUUGUG	chr12:70748126-70748402(+)$1	276	145	176	14.2371
UCUUUUCUAAAAUUUAUCUGUUUUAGAGUAG	chr5:96365845-96366091(+)$1	246	68	99	15.3379
CACCCAAAGAAUGAUGCAGUAUUAAAGGGGU	chr9:136229695-136229932(-)$1	237	116	147	14.1205
CCCUUGCCCUACUGGGCUCAGUUUCGCAGGG	chr16:88850455-88850743(-)$1	288	44	75	11.8678
CCUGGCUGAGCGCCugugugugugugccugu	chr22:49974624-49974918(-)$1	294	215	246	15.1623
UGUUGGGGGUGGGAGUGAGCCCACCACAGAG	chr7:44252167-44252412(+)$1	245	190	221	11.7481
CUCCAGGUGGGGGAGGGGAUGCCCACCUGGU	chr7:150078980-150079299(+)$1	319	130	161	13.7547
CGUCUCGGUGCCCCGUGGGAGAAGGACUGGA	chr16:89018874-89019153(-)$1	279	240	271	12.7608
UCUCCCUAAUCAUGGUAAAGUGUUAACCUUC	chr1:153779629-153779928(-)$1	299	13	44	13.4957
uauauauauauauauauacauauauauauau	chr11:118621560-118621808(-)$1	248	13	44	16.5857
CCUGGAGGGUGGGCGGAGCCCCGGUCAGCAG	chr19:47280580-47280856(-)$1	276	130	161	12.8711
AAUUCAGGUGUAAAUUUUAUUGCCUUGGAUA	chr3:170021351-170021638(+)$1	287	39	70	15.3084
GAGCAGUCAGUACAUACCAGUUUCUGAUGUU	chr4:76568958-76569224(-)$1	266	193	224	13.6538
GGAGGGCCCUGCCCCCAUGGGCUUUACCCUU	chr17:7215533-7215797(+)$1	264	141	172	11.1821
AAAGAAGCAGUUGUUUUAUUGUCAAUGUUUU	chr4:76568467-76568763(-)$1	296	195	226	11.2433
gaugcgaugcuucaaucccgagauuucacau	chr1:24796919-24797154(+)$1	235	22	53	14.8145
UCUGAGGCAGCUGGACUGGCAGCCAAGUAAA	chr11:62482194-62482442(-)$1	248	36	67	15.2057
gagguuaggaguucaagaccagccuggccaa	chr15:89743928-89744156(+)$1	228	168	199	10.6081
AAAAAACAUUCUUAUGAAGGAGAUAGGUUCU	chr17:45197016-45197277(-)$1	261	115	146	16.1340
GUGUGUUUGGGGGGUGAGGCCCCUUGGGACG	chr16:90074892-90075139(-)$1	247	60	91	13.0574
GCCUUAUCCUGGCCACCCCGCCUGUGGGACG	chr12:133393415-133393762(-)$1	347	171	202	15.6698
uuuuaauuaaauuuaaugauuuuaauuaaga	chr11:74552133-74552373(+)$1	240	15	46	12.0323
GGGCCCCUCACCCCAAGGCGGGUGAGCUCUG	chr19:42752572-42752836(-)$1	264	139	170	12.0928
UCCUGUGAGACAGGAGAGGCUGAGCCAAGGG	chr11:60658251-60658512(-)$1	261	198	229	16.5325
UGAAUAAUUUGAGGUUUUAUUCAUAUUGCUA	chr6:163989185-163989437(+)$1	252	25	56	14.2932
CUGGGGUGAGCCUGACUGCCAGGACCCCAGG	chr17:37075363-37075615(+)$1	252	31	62	11.1780
AGGACUCCUAAGCGCCGAAGCCAAGGAGCCU	chr1:27731759-27731988(-)$1	229	31	62	12.8891
AAACAAUUUGGUUCAUUCAGACUGAAAUGUU	chr12:46753967-46754324(-)$1	357	214	245	13.2961
GCGUGUGAGCUGUGCCUGGGCAGCUUUCAGC	chr1:1157851-1158143(-)$1	292	19	50	13.0739
GGGUAGGAGUUAAGGUUUAUUCAAUCCUGUC	chr3:44966607-44966961(-)$1	354	142	173	16.2943
AAACAGCAGUGUAUAUUUUUGGUGGUGGUGG	chr12:52389006-52389234(+)$1	228	9	40	12.8993
ACUUUUAUGAGUCAUUGUAGACAUCUAUAAA	chr8:104411155-104411428(-)$1	273	86	117	12.8438
guuuucauuguuuucucuuaaacugaaaucu	chr2:37324188-37324493(+)$1	305	227	258	12.7630
CCAAGUGUCUUCCUACUCAAGGUAAACAUUA	chr12:118469427-118469691(+)$1	264	17	48	11.1445
GCCGGUGGAGAGCAGCACCUUUAAGAGCCCU	chr10:99433484-99433758(+)$1	274	96	127	13.7172
UCACACACUUGAAUAUUUUUUUAGAAGUGUG	chr17:45761103-45761329(+)$1	226	119	150	14.2236
GCAGGCGGGCAGCACUGAGGGACCCUGCCCC	chr11:64895151-64895392(-)$1	241	135	166	13.8634
UUUGGGGUGCCCUGGACCUGGGGUACCCUGG	chr14:105628781-105629086(-)$1	305	239	270	15.9923
ugcgugcgugcgugcgucuugcgugcgugug	chr19:1592241-1592492(-)$1	251	83	114	11.8582
UUUGGGGUGCCCUGGACCUGGGGUACCCUGG	chr14:105628722-105628981(-)$1	259	134	165	15.9923
UUACAGUUGAAGAGCUUGGUUUUCAUUGAGC	chr20:31437053-31437302(+)$1	249	177	208	11.8929
GUAUAUUGUUUACUUUAUUGUAAAUACUGGU	chr7:26252691-26252956(+)$1	265	214	245	14.4094
AAAUAAAAGUAAUCCAAAAGUUAUUUUUCUA	chr22:39096014-39096294(-)$1	280	74	105	16.1957
cuuaacagaacuucugcuggaacuacuggaa	chr18:32912541-32912861(-)$1	320	278	309	11.4282
CACAAGACACAGCGGAGCUCGGGAUUGGCUA	chr19:3053612-3053828(-)$1	216	86	117	10.7960
CCCAGCACUGUCUCAUAGAAGGCUCUGGUGG	chr5:154194034-154194270(+)$1	236	73	104	13.9098
CCCUGGUUAAUAACAAGUUUUACUGAUCAGU	chr7:135612966-135613228(-)$1	262	89	120	16.1578
uguauggauggauggguggguggaugcaugg	chr19:49407267-49407588(+)$1	321	21	52	11.8569

#DB
)))(((....(((......)))...))))))	chr1:47683188-47683471(-)$1	1	105	136	14.4642
((((((((..(((......)))....)))))	chr5:137523658-137523917(-)$1	1	212	243	14.0502
.(((...(((((((......)).)))))...	chr2:170497220-170497465(+)$1	1	135	166	12.1763
.(((..(((.(((......))).)))..)))	chr17:64793979-64794254(+)$1	1	126	157	14.7800
(((..(((..(((......)))..)))..))	chr3:33909644-33909940(+)$1	1	72	103	14.9518
(((((((.(((((......))))))))))))	chr12:70748126-70748402(+)$1	1	145	176	14.2371
(((.(((((((((......))))))))).))	chr5:96365845-96366091(+)$1	1	68	99	15.3379
(((((....((((......))))....))))	chr9:136229695-136229932(-)$1	1	116	147	14.1205
(((((((...((((....))))...))))))	chr16:88850455-88850743(-)$1	1	44	75	11.8678
(..(((...((((......))))..))).))	chr22:49974624-49974918(-)$1	1	215	246	15.1623
(((....((((((......)))))))))).)	chr7:44252167-44252412(+)$1	1	190	221	11.7481
))))(((((((.(......).))))))).((	chr7:150078980-150079299(+)$1	1	130	161	13.7547
(((((((((.(..(......)..).))))..	chr16:89018874-89019153(-)$1	1	240	271	12.7608
(.....(((.(((......))))))))))..	chr1:153779629-153779928(-)$1	1	13	44	13.4957
(((((((((((((......))))))))))))	chr11:118621560-118621808(-)$1	1	13	44	16.5857
((((..((.((((......)))).))..)))	chr19:47280580-47280856(-)$1	1	130	161	12.8711
.(((((((.((((......))))))))))).	chr3:170021351-170021638(+)$1	1	39	70	15.3084
(((((.((((.((......))..))))))))	chr4:76568958-76569224(-)$1	1	193	224	13.6538
((((((....((((....))))....)))))	chr17:7215533-7215797(+)$1	1	141	172	11.1821
(((((((((.(((.........)))))))))	chr4:76568467-76568763(-)$1	1	195	226	11.2433
((((.((...(((......)))...)).)))	chr1:24796919-24797154(+)$1	1	22	53	14.8145
(((...((.((((......))))...))...	chr11:62482194-62482442(-)$1	1	36	67	15.2057
(.(((((((.(((...)))...)))))))..	chr15:89743928-89744156(+)$1	1	168	199	10.6081
(...(((..((((......))))...))).)	chr17:45197016-45197277(-)$1	1	115	146	16.1340
((.(....(((((......)))))..).)).	chr16:90074892-90075139(-)$1	1	60	91	13.0574
(((((.(((((((......)))...)))).)	chr12:133393415-133393762(-)$1	1	171	202	15.6698
(((((((((((.........)))))))))))	chr11:74552133-74552373(+)$1	1	15	46	12.0323
((....(((((((......))))))).....	chr19:42752572-42752836(-)$1	1	139	170	12.0928
((((.((...(((......)))...)).)))	chr11:60658251-60658512(-)$1	1	198	229	16.5325
(...((((.((((......)))).))))...	chr6:163989185-163989437(+)$1	1	25	56	14.2932
(((((((...((((.....)))))))))))(	chr17:37075363-37075615(+)$1	1	31	62	11.1780
(((.(((((..((......))..))))))))	chr1:27731759-27731988(-)$1	1	31	62	12.8891
(((((.(((((((......))))))).))))	chr12:46753967-46754324(-)$1	1	214	245	13.2961
((.((.(((((((......))))))).))))	chr1:1157851-1158143(-)$1	1	19	50	13.0739
((((((((...((......))...)))))))	chr3:44966607-44966961(-)$1	1	142	173	16.2943
(..((.((.(.((......))..).)).)).	chr12:52389006-52389234(+)$1	1	9	40	12.8993
(..((((((((((......))).)).)))))	chr8:104411155-104411428(-)$1	1	86	117	12.8438
..(((((..((((......))))))))))).	chr2:37324188-37324493(+)$1	1	227	258	12.7630
...(((((...(((.....)))...))))).	chr12:118469427-118469691(+)$1	1	17	48	11.1445
(..(((..((((......))))....)))..	chr10:99433484-99433758(+)$1	1	96	127	13.7172
((((((..(((((......)))))..)))))	chr17:45761103-45761329(+)$1	1	119	150	14.2236
(..((((((...(......)...)))))).)	chr11:64895151-64895392(-)$1	1	135	166	13.8634
((.((((((((((......))))))))))))	chr14:105628781-105629086(-)$1	1	239	270	15.9923
.((((((((((((((.....)))))))))))	chr19:1592241-1592492(-)$1	1	83	114	11.8582
((.((((((((((......))))))))))))	chr14:105628722-105628981(-)$1	1	134	165	15.9923
((.((((.(((((......))))))))))))	chr20:31437053-31437302(+)$1	1	177	208	11.8929
((.((((((((((......)))))))...))	chr7:26252691-26252956(+)$1	1	214	245	14.4094
(...(((((((((......)))))))))...	chr22:39096014-39096294(-)$1	1	74	105	16.1957
(((..(((...((((...))))...)))..)	chr18:32912541-32912861(-)$1	1	278	309	11.4282
(.(((..(..(((...)))..)..)))))))	chr19:3053612-3053828(-)$1	1	86	117	10.7960
((.(.((..((((......))))..)).)))	chr5:154194034-154194270(+)$1	1	73	104	13.9098
..(((((((.(((......))).))))))).	chr7:135612966-135613228(-)$1	1	89	120	16.1578
(.((((.((..((......))..)).)))).	chr19:49407267-49407588(+)$1	1	21	52	11.8569

#PSSM
d : 0.15	g : 0.15	c : 0.11	h : 0.09	e : 0.07	i : 0.07	= : 0.07	b : 0.07	f : 0.05	! : 0.03	[ : 0.03	" : 0.01	$ : 0.01	# : 0.01	
g : 0.13	d : 0.11	c : 0.11	! : 0.11	= : 0.09	h : 0.07	i : 0.07	[ : 0.05	" : 0.05	f : 0.05	e : 0.03	$ : 0.03	b : 0.01	# : 0.01	
g : 0.16	c : 0.13	[ : 0.13	! : 0.09	= : 0.09	d : 0.07	i : 0.07	e : 0.05	" : 0.05	h : 0.03	# : 0.03	$ : 0.01	f : 0.01	
g : 0.16	c : 0.13	= : 0.13	e : 0.09	i : 0.07	" : 0.07	d : 0.05	! : 0.03	[ : 0.03	# : 0.03	a : 0.03	f : 0.03	b : 0.03	h : 0.01	$ : 0.01	
g : 0.18	= : 0.13	c : 0.11	e : 0.09	! : 0.07	i : 0.07	# : 0.05	[ : 0.05	d : 0.05	" : 0.03	f : 0.03	b : 0.03	h : 0.01	$ : 0.01	
g : 0.16	c : 0.13	= : 0.09	[ : 0.09	i : 0.07	# : 0.07	d : 0.07	e : 0.07	! : 0.05	b : 0.05	" : 0.03	h : 0.01	$ : 0.01	f : 0.01	
g : 0.20	b : 0.11	# : 0.09	c : 0.09	d : 0.09	= : 0.09	i : 0.07	e : 0.07	! : 0.05	" : 0.03	h : 0.01	f : 0.01	[ : 0.01	
g : 0.15	" : 0.09	= : 0.09	! : 0.09	# : 0.07	e : 0.07	c : 0.07	i : 0.07	d : 0.07	b : 0.07	[ : 0.03	f : 0.03	h : 0.01	a : 0.01	
" : 0.15	g : 0.13	! : 0.11	e : 0.11	= : 0.09	[ : 0.09	d : 0.07	# : 0.05	i : 0.05	c : 0.03	f : 0.03	b : 0.03	
d : 0.22	" : 0.15	[ : 0.11	! : 0.09	e : 0.09	g : 0.09	= : 0.09	# : 0.03	i : 0.03	f : 0.01	a : 0.01	b : 0.01	
c : 0.24	d : 0.24	e : 0.09	g : 0.09	= : 0.09	" : 0.07	i : 0.03	[ : 0.03	! : 0.03	f : 0.01	a : 0.01	
c : 0.26	d : 0.26	e : 0.09	b : 0.09	= : 0.07	g : 0.07	i : 0.03	f : 0.01	[ : 0.01	! : 0.01	r : 0.01	" : 0.01	
c : 0.26	d : 0.24	b : 0.11	e : 0.07	= : 0.07	g : 0.07	i : 0.03	a : 0.03	f : 0.01	! : 0.01	r : 0.01	o : 0.01	
o : 0.77	d : 0.07	r : 0.03	l : 0.03	b : 0.01	a : 0.01	c : 0.01	= : 0.01	
o : 0.81	m : 0.03	r : 0.03	l : 0.03	n : 0.03	= : 0.01	d : 0.01	
o : 0.81	l : 0.05	n : 0.05	m : 0.03	r : 0.03	
o : 0.81	n : 0.05	m : 0.03	r : 0.03	c : 0.03	l : 0.01	
o : 0.81	n : 0.05	m : 0.03	r : 0.03	c : 0.03	l : 0.01	
o : 0.79	d : 0.07	n : 0.05	r : 0.03	c : 0.03	
d : 0.26	c : 0.20	b : 0.09	e : 0.07	g : 0.07	= : 0.05	o : 0.03	i : 0.03	a : 0.03	r : 0.03	f : 0.01	3 : 0.01	n : 0.01	2 : 0.01	
d : 0.26	c : 0.20	b : 0.11	= : 0.09	e : 0.07	g : 0.07	i : 0.03	3 : 0.03	f : 0.01	] : 0.01	a : 0.01	r : 0.01	2 : 0.01	
d : 0.26	c : 0.20	g : 0.09	2 : 0.09	= : 0.09	e : 0.07	3 : 0.05	i : 0.03	b : 0.01	f : 0.01	r : 0.01	a : 0.01	
d : 0.18	3 : 0.16	2 : 0.13	g : 0.11	= : 0.09	] : 0.07	e : 0.07	4 : 0.05	i : 0.03	c : 0.03	f : 0.01	
3 : 0.18	g : 0.16	e : 0.13	= : 0.09	4 : 0.07	2 : 0.07	c : 0.05	i : 0.03	f : 0.03	a : 0.03	] : 0.03	b : 0.03	d : 0.01	
g : 0.18	3 : 0.16	c : 0.09	= : 0.09	4 : 0.07	2 : 0.07	e : 0.05	i : 0.05	b : 0.05	d : 0.05	f : 0.03	] : 0.03	
g : 0.20	d : 0.13	c : 0.11	= : 0.09	b : 0.09	4 : 0.07	e : 0.07	i : 0.07	3 : 0.03	2 : 0.03	] : 0.03	f : 0.01	
g : 0.16	d : 0.15	c : 0.13	e : 0.09	= : 0.09	b : 0.09	i : 0.07	2 : 0.03	] : 0.03	h : 0.01	4 : 0.01	a : 0.01	6 : 0.01	f : 0.01	3 : 0.01	
g : 0.18	d : 0.13	e : 0.11	= : 0.11	c : 0.09	] : 0.09	i : 0.07	2 : 0.05	b : 0.03	f : 0.03	h : 0.01	6 : 0.01	3 : 0.01	
g : 0.16	d : 0.11	= : 0.11	3 : 0.09	c : 0.07	e : 0.07	b : 0.07	i : 0.05	h : 0.03	2 : 0.03	] : 0.03	f : 0.03	F : 0.01	: : 0.01	6 : 0.01	a : 0.01	
g : 0.15	e : 0.11	2 : 0.09	3 : 0.07	c : 0.07	] : 0.07	= : 0.07	d : 0.07	h : 0.05	i : 0.05	b : 0.05	f : 0.05	F : 0.01	6 : 0.01	
g : 0.11	= : 0.11	3 : 0.09	c : 0.09	e : 0.09	2 : 0.09	d : 0.07	] : 0.07	h : 0.05	i : 0.05	f : 0.05	F : 0.01	6 : 0.01	b : 0.01	4 : 0.01	

#score	722.8704394880073
#seq	53
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_transcript_m3_run2.txt

#BEAR
c[eeeeecccooooooccc]eeeee]cc	chr7:23508249-23508509(-)$1	260	55	83	12.7231
:a[gggggggooooooggggggg]aCCC	chr8:9628400-9628679(+)$1	279	2	30	11.2359
d!!gggggggooooooggggggg333dd	chr19:18548047-18548297(-)$1	250	209	237	14.8349
""ggggggg[annnnna]gggggggbb]	chr3:128211703-128211981(+)$1	278	131	159	11.2475
e!!a[eeeeeooooooeeeee]aeeeee	chr4:1241205-1241466(-)$1	261	6	34	12.7277
cc"""eeeeeooooooeeeee22ccc22	chr22:50023950-50024193(-)$1	243	66	94	11.7842
!!iiiiiiiiinnnnniiiiiiiiifff	chr9:140175279-140175523(+)$1	244	213	241	11.0133
eeeee"""bboooooobb]eeeeedddd	chr2:216279513-216279767(-)$1	254	177	205	12.3680
ff"""eeeeeooooooeeeee333ffff	chr1:249149298-249149554(-)$1	256	196	224	12.0454
dd[gggggggooooooggggggg]dddd	chr14:94849055-94849330(-)$1	275	212	240	14.3965
affffff[bboooooobbffffff]a]a	chrM:691-906(+)$1	215	182	210	12.2903
[iiiiiiiiiooooooiiiiiiiiiddd	chr2:97482325-97482579(+)$1	254	170	198	14.5429
dddd[ccccccnnnnnccc]ccc]dddd	chr7:932029-932337(+)$1	308	225	253	9.1681
a[ccc"""bboooooobb22ccc]a]cc	chr5:649861-650129(+)$1	268	140	168	12.6310
cc[bb[ddddoooooodddd]bb]ccc6	chrM:1245-1450(+)$1	205	20	48	10.4982
ggggggg[bboooooobbgggggggGGG	chr7:933189-933397(+)$1	208	132	160	12.6809
cgggggggcccnnnnnccc]ggggggg]	chr13:92000949-92001214(+)$1	265	171	199	10.8274
ffffffddddooooooddddiiiiiiii	chr7:156931672-156931985(+)$1	313	149	177	11.5967
[bb[gggggggnnnnnggggggg]bb22	chr3:196755829-196756102(-)$1	273	119	147	10.1376
dd[bb[a[bboooooobbabb]dddd]d	chr6:157735229-157735488(-)$1	259	196	224	11.3930
eeeeffffffooooooffffff]eeeee	chr19:1412159-1412428(+)$1	269	159	187	12.4960
:==========nnnnn==========dd	chr9:94711215-94711461(-)$1	246	28	56	10.5794
dddd"""cccooooooccc333dddddd	chr17:80544804-80545042(+)$1	238	159	187	12.1168
eee[ffffffooooooffffffeeeee]	chrM:8040-8259(+)$1	219	138	166	12.8396
eeeea"""bboooooobb333a]eeeee	chr16:88583199-88583488(+)$1	289	179	207	12.6335
eeccc[ddddoooooodddd]ccc]eee	chr2:11484091-11484339(-)$1	248	14	42	11.7267
[iiiiiiiiiooooooiiiiiiiii]aD	chr20:31171752-31171967(-)$1	215	15	43	13.8063
b!!gggggggooooooggggggg22bbe	chr19:2425983-2426256(-)$1	273	211	239	13.9497
eee[ffffffooooooffffffeeeee:	chrM:8059-8280(+)$1	221	119	147	11.9927
ddggggggg[annnnna]ggggggg333	chr16:85659262-85659522(+)$1	260	52	80	11.2313
[ccc[a!!bboooooobb22a]ccceee	chr22:49974972-49975194(-)$1	222	122	150	12.6936
eee!!eeeeeooooooeeeee22eeeee	chr12:132402733-132403010(+)$1	277	11	39	12.2520
###gggggggoooooogggggggddddd	chr20:35486065-35486307(-)$1	242	146	174	14.1586
eee[ffffffooooooffffffeeeee]	chrM:8080-8286(+)$1	206	98	126	12.8396
[bb[gggggggnnnnnggggggg]bb]d	chr5:134263557-134263773(+)$1	216	8	36	10.4097
!!hhhhhhhhoooooohhhhhhhh22bb	chr16:89018894-89019177(-)$1	283	51	79	11.1548
cc!!dddd[aooooooa]ddddcccbb2	chr12:133268482-133268776(+)$1	294	26	54	11.4436
bb!!gggggggmmmmggggggg333bb]	chr6:155055091-155055366(+)$1	275	17	45	8.8628
eee[ccc[bboooooobbccceeeee:H	chr13:92000158-92000459(+)$1	301	19	47	11.5757
hhhh[eeeeeooooooeeeeehhhhhhh	chr16:31199299-31199527(+)$1	228	91	119	11.1162
[bb[ffffffooooooffffff]bbccc	chr21:47614159-47614410(-)$1	251	151	179	11.8864
d[eeeee[bboooooobb]eeeee]ddd	chr21:46574987-46575261(+)$1	274	29	57	12.6764
ggggggg[bboooooobbgggggggGGG	chr7:933229-933500(+)$1	271	92	120	12.6809
"ggggggg[aooooooaggggggg333f	chr9:96432748-96432992(+)$1	244	100	128	14.5188
:iiiiiiiiiooooooiiiiiiiii:ff	chr5:179247988-179248234(+)$1	246	81	109	12.6293
[bbccc[cccooooooccc]ccc22bb]	chr3:133465149-133465428(+)$1	279	29	57	12.4758
eagggggggaooooooa]ggggggg]a]	chr10:43902619-43902857(-)$1	238	202	230	14.5063

#otherMatches

#Seq PSSM
GCGGGCCUCGUGGUGUUGGUGGCCCCCA	chr7:23508249-23508509(-)$1	260	55	83	12.7231
uugagcacaugagcggauguguugaugu	chr8:9628400-9628679(+)$1	279	2	30	11.2359
CGGAGGUCUCAGGGGAGGGGCCUGGGGG	chr19:18548047-18548297(-)$1	250	209	237	14.8349
CCUGGGCGCGGGGUGGCGGCGCUCACCA	chr3:128211703-128211981(+)$1	278	131	159	11.2475
GUCCUCGCUGAGCUCCUAGCGCGUGGCC	chr4:1241205-1241466(-)$1	261	6	34	12.7277
AACACCCAGGCUUCUUUCUGGUCUUGCC	chr22:50023950-50024193(-)$1	243	66	94	11.7842
AGCCGGUGGCUUCUGUGGUCGCCGGGGG	chr9:140175279-140175523(+)$1	244	213	241	11.0133
CAUUUCCAAGUACAUUCUCAGGUGGAGA	chr2:216279513-216279767(-)$1	254	177	205	12.3680
cuucagcuaguguguguuagugcuaggg	chr1:249149298-249149554(-)$1	256	196	224	12.0454
AAGUUUUUGGAGGAUGUUAAAAAGUUGU	chr14:94849055-94849330(-)$1	275	212	240	14.3965
GGGUUGGUCAAUUUCGUGCCAGCCACCG	chrM:691-906(+)$1	215	182	210	12.2903
UGGCGCCUGCCGAGGUGCAGGUGCUGCG	chr2:97482325-97482579(+)$1	254	170	198	14.5429
ugcggguagcuguguggguguaugugCA	chr7:932029-932337(+)$1	308	225	253	9.1681
GGACUGUGAGGUGUGACUGAGGUGUGAC	chr5:649861-650129(+)$1	268	140	168	12.6310
CCAUCUUCAGCAAACCCUGAUGAAGGCU	chrM:1245-1450(+)$1	205	20	48	10.4982
GUGAGUGUGGUCCUGUUCUGCUCACCCA	chr7:933189-933397(+)$1	208	132	160	12.6809
GGGCCGCGUGCGACGGGCACCGCGGCCG	chr13:92000949-92001214(+)$1	265	171	199	10.8274
cgggcucgggucgccucccggccgccgc	chr7:156931672-156931985(+)$1	313	149	177	11.5967
AGCGGCUCGCGGGGAUCGCGGGCGGCGA	chr3:196755829-196756102(-)$1	273	119	147	10.1376
CUGGGACACUAUGAUGAGGCCAGGUGAG	chr6:157735229-157735488(-)$1	259	196	224	11.3930
UCUUAGGGGCAGGAAAGUCCCUAGAGGC	chr19:1412159-1412428(+)$1	269	159	187	12.4960
GGGCGCGGCCGCCUUCUGGCCGCGCCGG	chr9:94711215-94711461(-)$1	246	28	56	10.5794
UGGCCACGCCACGCUCGGCACUGCCAGC	chr17:80544804-80545042(+)$1	238	159	187	12.1168
AAAUCUGUGGAGCAAACCACAGUUUCAU	chrM:8040-8259(+)$1	219	138	166	12.8396
GUCCCCAGccgagucaggagcguggacu	chr16:88583199-88583488(+)$1	289	179	207	12.6335
CUAGGCCCCGAGGCUGCGGGACCUGAGC	chr2:11484091-11484339(-)$1	248	14	42	11.7267
gugugugugugugugugCGCGCGCGGAG	chr20:31171752-31171967(-)$1	215	15	43	13.8063
CCACCCGGGUAUAGACACCUGGGAAGUG	chr19:2425983-2426256(-)$1	273	211	239	13.9497
AAAUCUGUGGAGCAAACCACAGUUUCAU	chrM:8059-8280(+)$1	221	119	147	11.9927
GCAGCUUCAAGGGUGUCGUGGGGCUCGG	chr16:85659262-85659522(+)$1	260	52	80	11.2313
CAAUCCUAAAGUGUAUUUCUGUGUUGCA	chr22:49974972-49975194(-)$1	222	122	150	12.6936
CUCCUCCCAGGCAGAUCUGGGCUGGGGG	chr12:132402733-132403010(+)$1	277	11	39	12.2520
ugugcugggugucuggacccaguggCCA	chr20:35486065-35486307(-)$1	242	146	174	14.1586
AAAUCUGUGGAGCAAACCACAGUUUCAU	chrM:8080-8286(+)$1	206	98	126	12.8396
AAGGAGCAGCUAAAUAGGUUGUUGUUGA	chr5:134263557-134263773(+)$1	216	8	36	10.4097
GAAUUCCUGCCUCCCAGCAGGAAUGGCC	chr16:89018894-89019177(-)$1	283	51	79	11.1548
CAACGCACACAACCUAGAGUGCUGCACC	chr12:133268482-133268776(+)$1	294	26	54	11.4436
CCACCCCUGGUCGAGGCCGGGGCCCGGA	chr6:155055091-155055366(+)$1	275	17	45	8.8628
CCGGCCAGCCGAAGAUGGUGGCGGCUAC	chr13:92000158-92000459(+)$1	301	19	47	11.5757
CAGCAUUUGCUGAAGUGUGGAGUUGUCU	chr16:31199299-31199527(+)$1	228	91	119	11.1162
ACAAGAGCCACAUGCCUGGUUCCUGGGG	chr21:47614159-47614410(-)$1	251	151	179	11.8864
UCUGUGCUUAGUCGUGUAUGCACAUGUG	chr21:46574987-46575261(+)$1	274	29	57	12.6764
GUGAGUGUGGUCCUGUUCUGCUCACCCA	chr7:933229-933500(+)$1	271	92	120	12.6809
GGGCCCUGUGAAGAGGCCAGGGCUGCAU	chr9:96432748-96432992(+)$1	244	100	128	14.5188
AGCGGCUGCUGAGCCGGGUGGCCGCCCU	chr5:179247988-179248234(+)$1	246	81	109	12.6293
GCGCCCAGCCCGCCCAGGCCGGGAAUGG	chr3:133465149-133465428(+)$1	279	29	57	12.4758
CGGGCCCUGCGCCGGGGUCAGGGCCACA	chr10:43902619-43902857(-)$1	238	202	230	14.5063

#DB
(.((((((((......))).))))).))	chr7:23508249-23508509(-)$1	1	55	83	12.7231
.(.(((((((......))))))).)(((	chr8:9628400-9628679(+)$1	1	2	30	11.2359
(..(((((((......)))))))...))	chr19:18548047-18548297(-)$1	1	209	237	14.8349
..(((((((.(.....).))))))))).	chr3:128211703-128211981(+)$1	1	131	159	11.2475
(..(.(((((......))))).))))))	chr4:1241205-1241466(-)$1	1	6	34	12.7277
((...(((((......)))))..)))..	chr22:50023950-50024193(-)$1	1	66	94	11.7842
..(((((((((.....))))))))))))	chr9:140175279-140175523(+)$1	1	213	241	11.0133
(((((...((......)).)))))))))	chr2:216279513-216279767(-)$1	1	177	205	12.3680
((...(((((......)))))...))))	chr1:249149298-249149554(-)$1	1	196	224	12.0454
((.(((((((......))))))).))))	chr14:94849055-94849330(-)$1	1	212	240	14.3965
(((((((.((......)))))))).).)	chrM:691-906(+)$1	1	182	210	12.2903
.(((((((((......))))))))))))	chr2:97482325-97482579(+)$1	1	170	198	14.5429
((((.((((((.....))).))).))))	chr7:932029-932337(+)$1	1	225	253	9.1681
(.(((...((......))..))).).))	chr5:649861-650129(+)$1	1	140	168	12.6310
((.((.((((......)))).)).))).	chrM:1245-1450(+)$1	1	20	48	10.4982
(((((((.((......))))))))))))	chr7:933189-933397(+)$1	1	132	160	12.6809
(((((((((((.....))).))))))).	chr13:92000949-92001214(+)$1	1	171	199	10.8274
))))))((((......))))((((((((	chr7:156931672-156931985(+)$1	1	149	177	11.5967
.((.(((((((.....))))))).))..	chr3:196755829-196756102(-)$1	1	119	147	10.1376
((.((.(.((......))))).)))).)	chr6:157735229-157735488(-)$1	1	196	224	11.3930
((((((((((......)))))).)))))	chr19:1412159-1412428(+)$1	1	159	187	12.4960
.((((((((((.....))))))))))((	chr9:94711215-94711461(-)$1	1	28	56	10.5794
((((...(((......)))...))))((	chr17:80544804-80545042(+)$1	1	159	187	12.1168
(((.((((((......))))))))))).	chrM:8040-8259(+)$1	1	138	166	12.8396
(((((...((......))...).)))))	chr16:88583199-88583488(+)$1	1	179	207	12.6335
(((((.((((......)))).))).)))	chr2:11484091-11484339(-)$1	1	14	42	11.7267
.(((((((((......))))))))).)(	chr20:31171752-31171967(-)$1	1	15	43	13.8063
(..(((((((......)))))))..))(	chr19:2425983-2426256(-)$1	1	211	239	13.9497
(((.((((((......))))))))))).	chrM:8059-8280(+)$1	1	119	147	11.9927
(((((((((.(.....).)))))))...	chr16:85659262-85659522(+)$1	1	52	80	11.2313
.(((.(..((......))..).))))))	chr22:49974972-49975194(-)$1	1	122	150	12.6936
(((..(((((......)))))..)))))	chr12:132402733-132403010(+)$1	1	11	39	12.2520
...(((((((......)))))))))))(	chr20:35486065-35486307(-)$1	1	146	174	14.1586
(((.((((((......))))))))))).	chrM:8080-8286(+)$1	1	98	126	12.8396
.((.(((((((.....))))))).)).)	chr5:134263557-134263773(+)$1	1	8	36	10.4097
..((((((((......))))))))..))	chr16:89018894-89019177(-)$1	1	51	79	11.1548
((..((((.(......).))))))))).	chr12:133268482-133268776(+)$1	1	26	54	11.4436
((..(((((((....)))))))...)).	chr6:155055091-155055366(+)$1	1	17	45	8.8628
(((.(((.((......)))))))))).(	chr13:92000158-92000459(+)$1	1	19	47	11.5757
((((.(((((......))))))))))))	chr16:31199299-31199527(+)$1	1	91	119	11.1162
.((.((((((......)))))).)))))	chr21:47614159-47614410(-)$1	1	151	179	11.8864
(.(((((.((......)).))))).)))	chr21:46574987-46575261(+)$1	1	29	57	12.6764
(((((((.((......))))))))))))	chr7:933229-933500(+)$1	1	92	120	12.6809
.(((((((.(......))))))))...)	chr9:96432748-96432992(+)$1	1	100	128	14.5188
.(((((((((......))))))))).((	chr5:179247988-179248234(+)$1	1	81	109	12.6293
.(((((.(((......))).)))..)).	chr3:133465149-133465428(+)$1	1	29	57	12.4758
((((((((((......).))))))).).	chr10:43902619-43902857(-)$1	1	202	230	14.5063

#PSSM
e : 0.23	d : 0.14	[ : 0.14	c : 0.10	: : 0.06	" : 0.04	! : 0.04	f : 0.04	a : 0.04	g : 0.04	b : 0.04	# : 0.02	h : 0.02	
e : 0.19	! : 0.10	d : 0.10	b : 0.10	c : 0.08	g : 0.08	[ : 0.06	f : 0.06	i : 0.06	a : 0.04	" : 0.02	= : 0.02	# : 0.02	h : 0.02	
e : 0.21	g : 0.14	! : 0.10	[ : 0.08	i : 0.08	b : 0.08	c : 0.06	" : 0.04	f : 0.04	d : 0.04	h : 0.04	= : 0.02	# : 0.02	
g : 0.25	[ : 0.14	e : 0.10	i : 0.08	c : 0.08	! : 0.06	" : 0.04	f : 0.04	d : 0.04	b : 0.04	h : 0.04	a : 0.02	= : 0.02	
g : 0.31	f : 0.14	[ : 0.08	i : 0.08	c : 0.08	e : 0.06	" : 0.06	b : 0.04	= : 0.02	a : 0.02	! : 0.02	h : 0.02	d : 0.02	
g : 0.31	e : 0.14	f : 0.14	i : 0.08	" : 0.08	c : 0.06	[ : 0.06	= : 0.02	a : 0.02	h : 0.02	d : 0.02	
g : 0.31	e : 0.14	f : 0.12	i : 0.08	" : 0.08	d : 0.08	c : 0.04	a : 0.02	= : 0.02	! : 0.02	h : 0.02	[ : 0.02	
g : 0.27	[ : 0.12	e : 0.10	f : 0.10	c : 0.08	i : 0.08	d : 0.08	" : 0.06	= : 0.02	! : 0.02	h : 0.02	
g : 0.23	b : 0.21	c : 0.10	e : 0.10	f : 0.10	i : 0.08	d : 0.06	[ : 0.04	= : 0.02	h : 0.02	
b : 0.21	g : 0.17	c : 0.10	e : 0.10	f : 0.10	i : 0.08	d : 0.06	a : 0.06	[ : 0.04	= : 0.02	h : 0.02	
o : 0.80	g : 0.06	a : 0.04	c : 0.04	i : 0.02	= : 0.02	
o : 0.80	n : 0.17	m : 0.02	
o : 0.80	n : 0.17	m : 0.02	
o : 0.80	n : 0.17	m : 0.02	
o : 0.80	n : 0.17	m : 0.02	
o : 0.80	n : 0.17	g : 0.02	
b : 0.21	g : 0.17	c : 0.10	a : 0.10	e : 0.10	f : 0.10	i : 0.08	d : 0.06	= : 0.02	h : 0.02	
b : 0.21	g : 0.19	c : 0.10	e : 0.10	f : 0.10	] : 0.08	i : 0.08	d : 0.06	= : 0.02	h : 0.02	
g : 0.29	c : 0.12	f : 0.12	e : 0.10	i : 0.08	d : 0.08	] : 0.04	2 : 0.04	a : 0.02	= : 0.02	3 : 0.02	h : 0.02	
g : 0.29	e : 0.14	f : 0.12	] : 0.08	i : 0.08	d : 0.08	2 : 0.04	3 : 0.04	b : 0.02	= : 0.02	h : 0.02	c : 0.02	
g : 0.31	e : 0.17	f : 0.12	i : 0.10	c : 0.08	] : 0.04	3 : 0.04	b : 0.02	= : 0.02	a : 0.02	h : 0.02	d : 0.02	
g : 0.31	f : 0.12	i : 0.10	e : 0.08	c : 0.08	] : 0.06	2 : 0.04	3 : 0.04	h : 0.04	b : 0.02	= : 0.02	a : 0.02	d : 0.02	
g : 0.29	e : 0.14	c : 0.12	i : 0.10	] : 0.06	2 : 0.04	3 : 0.04	d : 0.04	h : 0.04	a : 0.02	f : 0.02	b : 0.02	= : 0.02	
e : 0.23	] : 0.14	g : 0.14	i : 0.10	c : 0.08	3 : 0.06	d : 0.06	2 : 0.04	h : 0.04	f : 0.02	= : 0.02	b : 0.02	
e : 0.19	g : 0.12	d : 0.12	i : 0.10	c : 0.08	3 : 0.06	] : 0.06	b : 0.06	2 : 0.06	a : 0.04	f : 0.02	= : 0.02	h : 0.02	
e : 0.21	d : 0.17	b : 0.14	] : 0.08	3 : 0.06	c : 0.06	f : 0.04	G : 0.04	C : 0.02	a : 0.02	g : 0.02	i : 0.02	= : 0.02	2 : 0.02	h : 0.02	: : 0.02	
d : 0.19	e : 0.19	b : 0.12	c : 0.08	f : 0.06	] : 0.06	2 : 0.04	G : 0.04	a : 0.04	3 : 0.04	C : 0.02	g : 0.02	i : 0.02	: : 0.02	h : 0.02	
d : 0.23	] : 0.14	e : 0.14	f : 0.08	c : 0.06	2 : 0.06	G : 0.04	C : 0.02	a : 0.02	6 : 0.02	i : 0.02	D : 0.02	: : 0.02	3 : 0.02	b : 0.02	H : 0.02	h : 0.02	

#score	571.3974636886596
#seq	47
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_UTR_m1_run1.txt

#BEAR
e[dddduuuuuuuuuuuudddd]ee	chr7:99936294-99936617(+)$1	323	281	306	23.5820
[ddddvvvvvvvvvvvvvdddd]cc	chr3:167452022-167452274(-)$1	252	50	75	23.4770
ddddwwwwwwwwwwwwwwdddd22b	chr1:29474957-29475276(-)$1	319	199	224	21.1181
bb!!bbvvvvvvvvvvvvvbb22bb	chr3:128852810-128853048(-)$1	238	21	46	22.0552
gggggguuuuuuuuuuuuggggggg	chr12:7030685-7030962(+)$1	277	82	107	24.4878
##dddduuuuuuuuuuuuddddddd	chr6:26123908-26124234(-)$1	326	258	283	22.9730
ddddwwwwwwwwwwwwwwdddd333	chr6:86322343-86322615(-)$1	272	157	182	21.7303
eeeeeyyyyyyyyyyyyyyyyeeee	chr8:101315282-101315606(-)$1	324	44	69	20.6791
======ttttttttttt========	chr17:21731151-21731418(+)$1	267	168	193	23.5706
ggggggvvvvvvvvvvvvvgggggg	chr21:34931886-34932142(+)$1	256	148	173	24.6072
gggggguuuuuuuuuuuuggggggg	chr14:81651778-81652049(-)$1	271	181	206	24.4878
ccc[bbtttttttttttbbcccHHH	chr19:5600118-5600367(-)$1	249	3	28	20.2995
iiddddvvvvvvvvvvvvvddddEE	chr6:161501881-161502169(+)$1	288	51	76	21.6276
"eeeeevvvvvvvvvvvvveeeee3	chr3:195792327-195792572(-)$1	245	51	76	23.7124
gggggguuuuuuuuuuuuggggggg	chr19:2321491-2321728(-)$1	237	6	31	24.4878
======ttttttttttt========	chr2:29001598-29001905(+)$1	307	265	290	23.5706
[a[ccctttttttttttccc]a]bb	chr6:111279867-111280071(+)$1	204	69	94	22.7650
hhhhyyyyyyyyyyyyyyyyhhhhh	chr1:150204084-150204360(-)$1	276	227	252	19.9134
gg[cccvvvvvvvvvvvvvccc]gg	chr17:47013422-47013705(-)$1	283	211	236	24.6350
fffffvvvvvvvvvvvvvffffffe	chr12:123087611-123087876(+)$1	265	111	136	22.5079
::dddduuuuuuuuuuuuddddFFF	chr11:70268990-70269201(+)$1	211	101	126	20.2992
hhh[bbtttttttttttbb]hhhhh	chrX:151130795-151131018(-)$1	223	157	182	21.2548
ggggggyyyyyyyyyyyyyyyyggg	chr5:86690100-86690354(-)$1	254	106	131	21.1893
eee[ccctttttttttttccceeee	chr11:77330550-77330754(-)$1	204	102	127	22.8046
::cccvvvvvvvvvvvvvcccgggg	chr8:42257091-42257322(+)$1	231	126	151	21.9823
dddddduuuuuuuuuuuudddd555	chr2:217365973-217366231(+)$1	258	69	94	20.5615
eeee[avvvvvvvvvvvvva]eeee	chr4:80899153-80899428(-)$1	275	176	201	23.7865
ffffffvvvvvvvvvvvvvffffff	chr6:31730095-31730332(+)$1	237	80	105	22.7960
ggggggwwwwwwwwwwwwwwggggg	chr17:45673621-45673929(+)$1	308	63	88	23.1193
!a[bbwwwwwwwwwwwwwwbb]a22	chr9:127620083-127620310(-)$1	227	114	139	21.4708
ii[cccvvvvvvvvvvvvvccc]ii	chr15:89804951-89805191(+)$1	240	21	46	24.6096
ffffffvvvvvvvvvvvvvffffff	chrX:53440081-53440298(-)$1	217	139	164	22.7960
ggggccctttttttttttccc]ggg	chr3:179294505-179294786(+)$1	281	43	68	23.5287
Feeeeeuuuuuuuuuuuueeeee:b	chr17:74046411-74046701(-)$1	290	55	80	21.9486
hh[cccvvvvvvvvvvvvvccc444	chr3:141632484-141632766(+)$1	282	93	118	23.7473
!fffffftttttttttttffffffc	chr22:19707008-19707260(+)$1	252	175	200	21.6127
==dddduuuuuuuuuuuudddd]==	chr17:27001456-27001681(+)$1	225	134	159	24.0514
ggggwwwwwwwwwwwwwwggggggg	chr9:95027719-95027935(-)$1	216	27	52	22.7203
!!ddddvvvvvvvvvvvvvdddd22	chr12:49087667-49087971(-)$1	304	210	235	23.4222
======wwwwwwwwwwwwww=====	chr17:7481044-7481275(+)$1	231	124	149	23.2024
[eeeeeuuuuuuuuuuuueeeee]e	chr17:73664566-73664782(+)$1	216	178	203	23.7234
"""cccuuuuuuuuuuuuccc]ddd	chr12:133324623-133324901(-)$1	278	247	272	23.4771
hhhhhvvvvvvvvvvvvvhhhhhhh	chr17:61898989-61899284(-)$1	295	168	193	22.0297
!!dddduuuuuuuuuuuudddd333	chr9:131235864-131236110(+)$1	246	19	44	23.9346
e[ddddvvvvvvvvvvvvvdddd]e	chr5:70806179-70806523(+)$1	344	231	256	23.5773
======ttttttttttt========	chr7:26251600-26251809(+)$1	209	82	107	23.5706
ccccwwwwwwwwwwwwwwccc]ccc	chr19:8531051-8531290(+)$1	239	14	39	22.0334
d[cccvvvvvvvvvvvvvcccdddd	chrX:70504196-70504402(+)$1	206	130	155	23.1675
ggggggyyyyyyyyyyyyyyyyggg	chr3:73047126-73047409(+)$1	283	237	262	21.1893
[eeeeeuuuuuuuuuuuueeeeebb	chr1:156104545-156104788(+)$1	243	55	80	23.2564
ggg!!avvvvvvvvvvvvva22ggg	chr6:4060736-4060992(+)$1	256	96	121	24.2423
bb[ddddtttttttttttddddbb]	chr17:80443393-80443631(+)$1	238	71	96	21.2327
eeee[bbtttttttttttbbeeeee	chr12:56565032-56565307(-)$1	275	240	265	21.8232
iiiiiitttttttttttiiiiiiii	chr2:136736804-136737032(-)$1	228	100	125	23.1627
eeeeeattttttttttta]eeeeef	chr5:140956986-140957225(-)$1	239	159	184	22.8900
beeeeeuuuuuuuuuuuueeeee]b	chr16:89349996-89350283(-)$1	287	174	199	23.1559
ggggggtttttttttttggggggg:	chr17:40725227-40725484(-)$1	257	191	216	22.1700
ggg!!bbtttttttttttbb22ggg	chr17:27000287-27000546(+)$1	259	111	136	22.2649
gggggggtttttttttttggggggg	chr1:154148588-154148818(-)$1	230	128	153	23.0428
[eeeeeyyyyyyyyyyyyyyyyeee	chr22:19486523-19486768(+)$1	245	77	102	20.5146
hhh[bbtttttttttttbb]hhhhh	chr11:77790679-77790992(-)$1	313	216	241	21.2548
!eeeeeuuuuuuuuuuuueeeee]i	chr8:11687667-11687894(+)$1	227	65	90	23.8482
"bb[avvvvvvvvvvvvvabb333c	chr16:11935672-11935930(-)$1	258	142	167	22.9645
ee!!bbuuuuuuuuuuuubb22eee	chr19:1440247-1440470(+)$1	223	125	150	22.7596
gggggguuuuuuuuuuuuggggggg	chr7:38908671-38908954(-)$1	283	239	264	24.4878
==dddduuuuuuuuuuuudddd]==	chr17:27001454-27001656(+)$1	202	136	161	24.0514
gggggguuuuuuuuuuuuggggggg	chr7:148516587-148516806(-)$1	219	129	154	24.4878
ffffffvvvvvvvvvvvvvffffff	chr17:46128193-46128532(+)$1	339	236	261	22.7960

#otherMatches

#Seq PSSM
UCUACAAACUUGAUUUGAUGUGAAC	chr7:99936294-99936617(+)$1	323	281	306	23.5820
GCUUUGUAAGUAAGAGAAAAGGGAG	chr3:167452022-167452274(-)$1	252	50	75	23.4770
UCGAGAUCCAAUUCCAAAUCGAAAC	chr1:29474957-29475276(-)$1	319	199	224	21.1181
UUAGUGGAAAAGUGGAAAGCAGAGA	chr3:128852810-128853048(-)$1	238	21	46	22.0552
ACCAGGAUGAUUGGGCUGCCUGGUC	chr12:7030685-7030962(+)$1	277	82	107	24.4878
ACUGGCAUCUCUUCCAAGGCCAUGG	chr6:26123908-26124234(-)$1	326	258	283	22.9730
CGGGACAUUGAACUAAUACUUGGAC	chr6:86322343-86322615(-)$1	272	157	182	21.7303
gcgcagaaaaggaggaagcagugug	chr8:101315282-101315606(-)$1	324	44	69	20.6791
UUUCUGACUACAACAUCCAGAAGGA	chr17:21731151-21731418(+)$1	267	168	193	23.5706
AAAACAAAGAUGAUGAUAAUGUUUU	chr21:34931886-34932142(+)$1	256	148	173	24.6072
AUGUCAUCUUCAGAUUACUGACGUU	chr14:81651778-81652049(-)$1	271	181	206	24.4878
GACGUCUGAGUAUGUGUGAGUCGAG	chr19:5600118-5600367(-)$1	249	3	28	20.2995
AAGCUGGAUCCAAAUGCUACAGCAA	chr6:161501881-161502169(+)$1	288	51	76	21.6276
CCUGGGCAAGGAACAAUAACUCAGA	chr3:195792327-195792572(-)$1	245	51	76	23.7124
UGGAGGCCAUCCCCAACCCCUUCAU	chr19:2321491-2321728(-)$1	237	6	31	24.4878
AGUGUGCUAGCAUCAAUCGCAUUUA	chr2:29001598-29001905(+)$1	307	265	290	23.5706
GUGGCCAGUGACUAGAAGGCGAGGC	chr6:111279867-111280071(+)$1	204	69	94	22.7650
CUUAAAUAAACUUCGAAAAGUAAGU	chr1:150204084-150204360(-)$1	276	227	252	19.9134
AGGUCUUUAAAAUUCAGAUGGAACU	chr17:47013422-47013705(-)$1	283	211	236	24.6350
ACUCUCUAUAGUCAACCCAGAGUGG	chr12:123087611-123087876(+)$1	265	111	136	22.5079
GAUGGAUAAGGUAAAUAUUCCAGCC	chr11:70268990-70269201(+)$1	211	101	126	20.2992
AUUCUCUCUCCCCUUCUGAUAAUUU	chrX:151130795-151131018(-)$1	223	157	182	21.2548
UUUCUCAAUGCUAACUAAUCAAGAG	chr5:86690100-86690354(-)$1	254	106	131	21.1893
AGGUGAGUAGUUCAUUUUCUCCCUU	chr11:77330550-77330754(-)$1	204	102	127	22.8046
CAGGGUAAUUAUUCAAAUCCCAUUU	chr8:42257091-42257322(+)$1	231	126	151	21.9823
AAACUGAAUCUUUCUUUCCAGUACC	chr2:217365973-217366231(+)$1	258	69	94	20.5615
CUGAAGAAACAGAGGAACCCAUCAG	chr4:80899153-80899428(-)$1	275	176	201	23.7865
GCGAUUUUCUCUCUUCUUCAGUUGC	chr6:31730095-31730332(+)$1	237	80	105	22.7960
UAAACAUUUUAGAUUAUCAUUGUUU	chr17:45673621-45673929(+)$1	308	63	88	23.1193
GGGGCGCAUUGUCAAUAAAGCACAG	chr9:127620083-127620310(-)$1	227	114	139	21.4708
GUAAUUUUCUUCCGACUUUAGUGGC	chr15:89804951-89805191(+)$1	240	21	46	24.6096
GGCUCUGAGGGACCAGGAUGGAGCC	chrX:53440081-53440298(-)$1	217	139	164	22.7960
CUUCUAGCUCCCCCACCCCUAUGAA	chr3:179294505-179294786(+)$1	281	43	68	23.5287
UCAAAGGAAAGUCUCUUACUUUGAU	chr17:74046411-74046701(-)$1	290	55	80	21.9486
GUCAGUUUCCUAUUUCAUUACUUCA	chr3:141632484-141632766(+)$1	282	93	118	23.7473
GGUGAAGAAAGGCUUUGACUUCACA	chr22:19707008-19707260(+)$1	252	175	200	21.6127
ACCUCAUUGAGGAGAAUUUGGGUGU	chr17:27001456-27001681(+)$1	225	134	159	24.0514
UGCUAUAUAAAUUAACUCAGUAUGC	chr9:95027719-95027935(-)$1	216	27	52	22.7203
CAAUGUGAAGUCACAAUAUGCAUAU	chr12:49087667-49087971(-)$1	304	210	235	23.4222
CGAGACGUGAUUAUGAGGGAGUUUC	chr17:7481044-7481275(+)$1	231	124	149	23.2024
AUUUCAUUUGUCAGAUUUUGGAACU	chr17:73664566-73664782(+)$1	216	178	203	23.7234
GUGUCCACACAUCAGAUAGGAAGCU	chr12:133324623-133324901(-)$1	278	247	272	23.4771
GCAGGAAGAACAAGCCAACCUGUGG	chr17:61898989-61899284(-)$1	295	168	193	22.0297
UCCAGGAGAAACAAAUGACCUGCAC	chr9:131235864-131236110(+)$1	246	19	44	23.9346
GCCUGUAGAUGAAAUGGAGACAGAC	chr5:70806179-70806523(+)$1	344	231	256	23.5773
UUUCUUUUUCUUAAAACAGGAAAGA	chr7:26251600-26251809(+)$1	209	82	107	23.5706
GUGUUUCUUAAGAUGUUUACAUUGA	chr19:8531051-8531290(+)$1	239	14	39	22.0334
uugccagacaaaacaccgggcaccc	chrX:70504196-70504402(+)$1	206	130	155	23.1675
UCAGGAAAGGGAAAAAAGUAUAUUU	chr3:73047126-73047409(+)$1	283	237	262	21.1893
GCGUGAGACCAAGCGCCGUCAUGAG	chr1:156104545-156104788(+)$1	243	55	80	23.2564
AUCCAGGAAAAAAUUUAAACAAGAU	chr6:4060736-4060992(+)$1	256	96	121	24.2423
UGAUCCUGAAGCUUAAGAAGGGCAA	chr17:80443393-80443631(+)$1	238	71	96	21.2327
CCUGAGCGGAUUGGUAAGGCCAGGC	chr12:56565032-56565307(-)$1	275	240	265	21.8232
AGUUUUGGUUCGGGUUAGAGACUUG	chr2:136736804-136737032(-)$1	228	100	125	23.1627
UGGUCCGAAAUGACUAUGAGGCCAG	chr5:140956986-140957225(-)$1	239	159	184	22.8900
CGGGCGGGACAGAAAGGACGCCCUG	chr16:89349996-89350283(-)$1	287	174	199	23.1559
GUGCCUUUGAAAAUGGCAGGCACCA	chr17:40725227-40725484(-)$1	257	191	216	22.1700
GCAGAGUGAGAAGCUGCAGCAAUGU	chr17:27000287-27000546(+)$1	259	111	136	22.2649
UCCAGCUGGUUGAAGAAGAGCUGGA	chr1:154148588-154148818(-)$1	230	128	153	23.0428
UCCACUGCCUUCUCUUCUUCCAGGU	chr22:19486523-19486768(+)$1	245	77	102	20.5146
GAACCCAGAACCCUUACGGUUUCUG	chr11:77790679-77790992(-)$1	313	216	241	21.2548
UAAUCUUCUUAUCUGUCUAGGUUUG	chr8:11687667-11687894(+)$1	227	65	90	23.8482
AGGACUUUCAGAAAAAUUGCCAGAG	chr16:11935672-11935930(-)$1	258	142	167	22.9645
GCGAGUUCUCCAUCACCUACAAGCC	chr19:1440247-1440470(+)$1	223	125	150	22.7596
UAAAUUGUUUCCAUUGUAAAUUUGC	chr7:38908671-38908954(-)$1	283	239	264	24.4878
ACCUCAUUGAGGAGAAUUUGGGUGU	chr17:27001454-27001656(+)$1	202	136	161	24.0514
GUGCCUAAUUAUUGCAGAGGGUACU	chr7:148516587-148516806(-)$1	219	129	154	24.4878
UUUUGGAAGAUUUUAAAAACCAAAA	chr17:46128193-46128532(+)$1	339	236	261	22.7960

#DB
(.((((............)))).))	chr7:99936294-99936617(+)$1	1	281	306	23.5820
.((((.............)))).))	chr3:167452022-167452274(-)$1	1	50	75	23.4770
((((..............))))..)	chr1:29474957-29475276(-)$1	1	199	224	21.1181
((..((.............))..))	chr3:128852810-128853048(-)$1	1	21	46	22.0552
((((((............)))))))	chr12:7030685-7030962(+)$1	1	82	107	24.4878
..((((............)))))))	chr6:26123908-26124234(-)$1	1	258	283	22.9730
((((..............))))...	chr6:86322343-86322615(-)$1	1	157	182	21.7303
(((((................))))	chr8:101315282-101315606(-)$1	1	44	69	20.6791
((((((...........))))))))	chr17:21731151-21731418(+)$1	1	168	193	23.5706
((((((.............))))))	chr21:34931886-34932142(+)$1	1	148	173	24.6072
((((((............)))))))	chr14:81651778-81652049(-)$1	1	181	206	24.4878
(((.((...........)))))(((	chr19:5600118-5600367(-)$1	1	3	28	20.2995
))((((.............))))((	chr6:161501881-161502169(+)$1	1	51	76	21.6276
.(((((.............))))).	chr3:195792327-195792572(-)$1	1	51	76	23.7124
((((((............)))))))	chr19:2321491-2321728(-)$1	1	6	31	24.4878
((((((...........))))))))	chr2:29001598-29001905(+)$1	1	265	290	23.5706
.(.(((...........))).).))	chr6:111279867-111280071(+)$1	1	69	94	22.7650
((((................)))))	chr1:150204084-150204360(-)$1	1	227	252	19.9134
((.(((.............))).))	chr17:47013422-47013705(-)$1	1	211	236	24.6350
(((((.............))))))(	chr12:123087611-123087876(+)$1	1	111	136	22.5079
..((((............))))(((	chr11:70268990-70269201(+)$1	1	101	126	20.2992
(((.((...........)).)))))	chrX:151130795-151131018(-)$1	1	157	182	21.2548
((((((................)))	chr5:86690100-86690354(-)$1	1	106	131	21.1893
(((.(((...........)))))))	chr11:77330550-77330754(-)$1	1	102	127	22.8046
..(((.............)))((((	chr8:42257091-42257322(+)$1	1	126	151	21.9823
((((((............))))...	chr2:217365973-217366231(+)$1	1	69	94	20.5615
((((.(.............).))))	chr4:80899153-80899428(-)$1	1	176	201	23.7865
((((((.............))))))	chr6:31730095-31730332(+)$1	1	80	105	22.7960
((((((..............)))))	chr17:45673621-45673929(+)$1	1	63	88	23.1193
.(.((..............)).)..	chr9:127620083-127620310(-)$1	1	114	139	21.4708
((.(((.............))).))	chr15:89804951-89805191(+)$1	1	21	46	24.6096
((((((.............))))))	chrX:53440081-53440298(-)$1	1	139	164	22.7960
(((((((...........))).)))	chr3:179294505-179294786(+)$1	1	43	68	23.5287
((((((............))))).(	chr17:74046411-74046701(-)$1	1	55	80	21.9486
((.(((.............)))...	chr3:141632484-141632766(+)$1	1	93	118	23.7473
.((((((...........)))))))	chr22:19707008-19707260(+)$1	1	175	200	21.6127
((((((............)))).))	chr17:27001456-27001681(+)$1	1	134	159	24.0514
((((..............)))))))	chr9:95027719-95027935(-)$1	1	27	52	22.7203
..((((.............))))..	chr12:49087667-49087971(-)$1	1	210	235	23.4222
((((((..............)))))	chr17:7481044-7481275(+)$1	1	124	149	23.2024
.(((((............))))).)	chr17:73664566-73664782(+)$1	1	178	203	23.7234
...(((............))).)))	chr12:133324623-133324901(-)$1	1	247	272	23.4771
(((((.............)))))))	chr17:61898989-61899284(-)$1	1	168	193	22.0297
..((((............))))...	chr9:131235864-131236110(+)$1	1	19	44	23.9346
(.((((.............)))).)	chr5:70806179-70806523(+)$1	1	231	256	23.5773
((((((...........))))))))	chr7:26251600-26251809(+)$1	1	82	107	23.5706
((((..............))).)))	chr19:8531051-8531290(+)$1	1	14	39	22.0334
(.(((.............)))))))	chrX:70504196-70504402(+)$1	1	130	155	23.1675
((((((................)))	chr3:73047126-73047409(+)$1	1	237	262	21.1893
.(((((............)))))))	chr1:156104545-156104788(+)$1	1	55	80	23.2564
(((..(.............)..)))	chr6:4060736-4060992(+)$1	1	96	121	24.2423
((.((((...........)))))).	chr17:80443393-80443631(+)$1	1	71	96	21.2327
((((.((...........)))))))	chr12:56565032-56565307(-)$1	1	240	265	21.8232
((((((...........))))))))	chr2:136736804-136737032(-)$1	1	100	125	23.1627
((((((...........).))))))	chr5:140956986-140957225(-)$1	1	159	184	22.8900
((((((............))))).)	chr16:89349996-89350283(-)$1	1	174	199	23.1559
((((((...........))))))).	chr17:40725227-40725484(-)$1	1	191	216	22.1700
(((..((...........))..)))	chr17:27000287-27000546(+)$1	1	111	136	22.2649
(((((((...........)))))))	chr1:154148588-154148818(-)$1	1	128	153	23.0428
.(((((................)))	chr22:19486523-19486768(+)$1	1	77	102	20.5146
(((.((...........)).)))))	chr11:77790679-77790992(-)$1	1	216	241	21.2548
.(((((............))))).)	chr8:11687667-11687894(+)$1	1	65	90	23.8482
.((.(.............)))...)	chr16:11935672-11935930(-)$1	1	142	167	22.9645
((..((............))..)))	chr19:1440247-1440470(+)$1	1	125	150	22.7596
((((((............)))))))	chr7:38908671-38908954(-)$1	1	239	264	24.4878
((((((............)))).))	chr17:27001454-27001656(+)$1	1	136	161	24.0514
((((((............)))))))	chr7:148516587-148516806(-)$1	1	129	154	24.4878
((((((.............))))))	chr17:46128193-46128532(+)$1	1	236	261	22.7960

#PSSM
g : 0.23	e : 0.11	= : 0.08	[ : 0.07	h : 0.07	! : 0.07	d : 0.05	f : 0.05	b : 0.04	i : 0.04	" : 0.04	c : 0.02	: : 0.02	# : 0.01	F : 0.01	
g : 0.23	e : 0.19	= : 0.08	h : 0.07	f : 0.07	d : 0.05	[ : 0.04	b : 0.04	i : 0.04	c : 0.02	a : 0.02	: : 0.02	! : 0.02	# : 0.01	" : 0.01	
g : 0.22	d : 0.19	e : 0.17	[ : 0.08	f : 0.07	= : 0.05	c : 0.05	h : 0.05	! : 0.02	" : 0.01	i : 0.01	b : 0.01	
d : 0.20	g : 0.19	e : 0.16	c : 0.11	[ : 0.07	f : 0.07	! : 0.05	= : 0.05	h : 0.02	b : 0.01	i : 0.01	
d : 0.17	g : 0.16	e : 0.13	c : 0.13	b : 0.08	f : 0.07	w : 0.05	= : 0.05	[ : 0.02	! : 0.02	y : 0.01	h : 0.01	i : 0.01	a : 0.01	
d : 0.16	g : 0.16	b : 0.10	e : 0.10	c : 0.10	v : 0.08	w : 0.07	= : 0.05	f : 0.05	a : 0.04	y : 0.02	i : 0.01	
v : 0.29	u : 0.27	t : 0.14	w : 0.10	y : 0.07	c : 0.02	b : 0.02	f : 0.01	d : 0.01	g : 0.01	
v : 0.29	u : 0.27	t : 0.25	w : 0.10	y : 0.07	
v : 0.29	u : 0.27	t : 0.25	w : 0.10	y : 0.07	
v : 0.29	u : 0.27	t : 0.25	w : 0.10	y : 0.07	
v : 0.29	u : 0.27	t : 0.25	w : 0.10	y : 0.07	
v : 0.29	u : 0.27	t : 0.25	w : 0.10	y : 0.07	
v : 0.29	u : 0.27	t : 0.25	w : 0.10	y : 0.07	
v : 0.29	u : 0.27	t : 0.25	w : 0.10	y : 0.07	
v : 0.29	u : 0.27	t : 0.25	w : 0.10	y : 0.07	
v : 0.29	u : 0.27	t : 0.25	w : 0.10	y : 0.07	
v : 0.29	u : 0.27	t : 0.25	w : 0.10	y : 0.07	
v : 0.29	u : 0.27	w : 0.10	t : 0.10	y : 0.07	= : 0.04	b : 0.04	c : 0.01	i : 0.01	a : 0.01	g : 0.01	
v : 0.20	d : 0.16	g : 0.11	c : 0.10	b : 0.08	y : 0.07	e : 0.07	= : 0.04	w : 0.04	f : 0.02	h : 0.01	i : 0.01	] : 0.01	a : 0.01	
d : 0.20	c : 0.16	g : 0.13	e : 0.10	b : 0.08	y : 0.07	f : 0.07	= : 0.04	] : 0.02	a : 0.02	w : 0.02	h : 0.01	i : 0.01	
d : 0.20	g : 0.14	c : 0.14	e : 0.11	f : 0.07	y : 0.05	= : 0.05	h : 0.05	b : 0.04	2 : 0.04	] : 0.02	i : 0.01	
d : 0.22	g : 0.16	e : 0.16	f : 0.07	2 : 0.05	= : 0.05	c : 0.05	h : 0.05	] : 0.05	y : 0.04	a : 0.01	i : 0.01	3 : 0.01	
g : 0.23	e : 0.19	] : 0.10	d : 0.08	f : 0.07	= : 0.05	h : 0.05	3 : 0.04	2 : 0.02	H : 0.01	F : 0.01	5 : 0.01	a : 0.01	4 : 0.01	c : 0.01	b : 0.01	i : 0.01	
g : 0.25	e : 0.13	= : 0.08	f : 0.07	b : 0.05	h : 0.05	] : 0.05	2 : 0.04	d : 0.04	3 : 0.04	c : 0.02	i : 0.02	H : 0.01	E : 0.01	F : 0.01	5 : 0.01	: : 0.01	4 : 0.01	
g : 0.23	e : 0.14	b : 0.08	= : 0.08	c : 0.05	h : 0.05	f : 0.05	d : 0.04	3 : 0.04	i : 0.04	2 : 0.02	H : 0.01	E : 0.01	F : 0.01	5 : 0.01	4 : 0.01	] : 0.01	: : 0.01	

#score	1548.3025130289243
#seq	68
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_transcript_m3_run2.txt

#BEAR
cccooooooccc:	chr11:2159577-2159786(-)$1	209	191	204	10.6328
eeeooooooeeee	chr16:31198644-31198889(+)$1	245	88	101	9.2043
dddoooooodddd	chr9:137278266-137278517(+)$1	251	92	105	9.8956
cccooooooccc:	chr12:57586260-57586544(+)$1	284	136	149	10.6328
dddoooooodddd	chr17:79232429-79232779(-)$1	350	35	48	9.8956
cccooooooccc:	chr11:2152864-2153095(-)$1	231	101	114	10.6328
dddoooooodddd	chr11:2153407-2153615(-)$1	208	1	14	9.8956
cccooooooccc:	chr11:2152733-2152936(-)$1	203	21	34	10.6328
cccooooooccc:	chr17:7476127-7476410(+)$1	283	197	210	10.6328
gggoooooogggg	chr2:38938747-38939020(+)$1	273	26	39	9.8019
eeeooooooeeee	chr15:85191550-85191812(-)$1	262	51	64	9.2043
cccooooooccc:	chr11:2152595-2152805(-)$1	210	114	127	10.6328
fffooooooffff	chr2:236420635-236420908(+)$1	273	88	101	9.2705
fffooooooffff	chr7:882880-883147(+)$1	267	22	35	9.2705
dddoooooodddd	chr16:8986689-8986930(-)$1	241	190	203	9.8956
cccooooooccc:	chr16:16313066-16313376(-)$1	310	18	31	10.6328
cccooooooccc2	chr11:2153487-2153693(-)$1	206	79	92	10.9265
cccooooooccci	chr11:2152471-2152677(-)$1	206	28	41	10.9473
cccoooooocccB	chr9:19380013-19380256(-)$1	243	183	196	10.5211
dddoooooodddd	chr6:2377905-2378155(+)$1	250	99	112	9.8956
dddoooooodddd	chr16:31198563-31198844(+)$1	281	83	96	9.8956
cccooooooccc:	chr3:194829973-194830270(-)$1	297	231	244	10.6328
gggoooooogggg	chr2:152684394-152684659(-)$1	265	162	175	9.8019
fffooooooffff	chr16:11265595-11265882(+)$1	287	50	63	9.2705
c[aooooooa]cc	chr10:120967127-120967392(+)$1	265	202	215	9.9548
gggoooooogggg	chr19:4034544-4034763(+)$1	219	135	148	9.8019
cccooooooccci	chr11:2152480-2152682(-)$1	202	33	46	10.9473
cccooooooccc:	chr11:2152577-2152782(-)$1	205	91	104	10.6328
cccooooooccc:	chr11:2152758-2152965(-)$1	207	50	63	10.6328
cccooooooccc:	chr11:72423483-72423761(-)$1	278	15	28	10.6328
cccooooooccc:	chr4:83348241-83348477(-)$1	236	40	53	10.6328
dddoooooodddd	chr19:6716905-6717178(-)$1	273	154	167	9.8956
gggoooooogggg	chr9:137251748-137252013(+)$1	265	69	82	9.8019
cccooooooccc7	chr12:124842247-124842482(-)$1	235	39	52	10.7405
cccooooooccc:	chr6:16689060-16689356(-)$1	296	80	93	10.6328
fffooooooffff	chr7:157581798-157582116(-)$1	318	57	70	9.2705
cccooooooccc:	chr16:89364979-89365226(-)$1	247	33	46	10.6328
cccooooooccc3	chr3:126259032-126259320(+)$1	288	137	150	11.1085
cccooooooccc2	chr16:89362645-89362891(-)$1	246	203	216	10.9265
cccooooooccce	chr22:35739824-35740179(+)$1	355	284	297	10.9541
dbboooooobb]d	chr6:31785233-31785539(+)$1	306	105	118	8.7109
dddoooooodddd	chr3:8676823-8677066(-)$1	243	90	103	9.8956
gggoooooogggg	chr6:159048023-159048407(+)$1	384	366	379	9.8019
fffooooooffff	chr21:46854018-46854279(+)$1	261	206	219	9.2705
[bboooooobbff	chr7:72855374-72855646(-)$1	272	214	227	8.5603
cccooooooccc]	chr1:46035407-46035687(+)$1	280	85	98	11.1290
cccooooooccc5	chr20:32246745-32247045(-)$1	300	233	246	10.5154
dddoooooodddd	chr9:116968090-116968351(+)$1	261	121	134	9.8956
eeeooooooeeee	chr1:227165151-227165405(+)$1	254	226	239	9.2043
dddoooooodddd	chr20:37153508-37153805(+)$1	297	106	119	9.8956
cccooooooccc]	chr20:31052402-31052661(-)$1	259	188	201	11.1290
cccooooooccc2	chr22:48982831-48983086(+)$1	255	124	137	10.9265
cccooooooccc:	chr2:101458354-101458656(+)$1	302	109	122	10.6328
fffooooooffff	chr19:34881340-34881583(+)$1	243	38	51	9.2705
eeeooooooeeee	chr20:62324604-62324869(+)$1	265	122	135	9.2043
dddoooooodddd	chr12:6643948-6644160(+)$1	212	30	43	9.8956
dddoooooodddd	chr2:101458471-101458709(+)$1	238	181	194	9.8956
gggoooooogggg	chr11:882930-883212(-)$1	282	236	249	9.8019
cccooooooccc:	chr11:2152698-2152903(-)$1	205	114	127	10.6328
cccoooooocccc	chr11:2153241-2153446(-)$1	205	96	109	11.0346
cccooooooccce	chr2:230693737-230694072(-)$1	335	186	199	10.9541
dddoooooodddd	chr21:46949646-46949904(-)$1	258	27	40	9.8956
cccooooooccc:	chr11:2152717-2152922(-)$1	205	7	20	10.6328
dddoooooodddd	chr19:50363567-50363830(+)$1	263	50	63	9.8956
cccooooooccc:	chr11:2152845-2153051(-)$1	206	57	70	10.6328
cccoooooocccc	chr6:43271547-43271808(+)$1	261	86	99	11.0346
cccooooooccc]	chr19:798426-798682(+)$1	256	78	91	11.1290
eeeooooooeeee	chr6:167417825-167418086(+)$1	261	156	169	9.2043
b[aooooooa]bb	chr19:4035669-4035974(+)$1	305	187	200	8.9110
cccooooooccc:	chr11:2152669-2152876(-)$1	207	87	100	10.6328

#otherMatches

#Seq PSSM
UGCCCCGUCGCAC	chr11:2159577-2159786(-)$1	209	191	204	10.6328
CAAGAAAGAUUGG	chr16:31198644-31198889(+)$1	245	88	101	9.2043
GUCGGGAGAGGCU	chr9:137278266-137278517(+)$1	251	92	105	9.8956
UGCCUAAAAGCAC	chr12:57586260-57586544(+)$1	284	136	149	10.6328
GGCAGGGGAGCCC	chr17:79232429-79232779(-)$1	350	35	48	9.8956
gcacacacaugca	chr11:2152864-2153095(-)$1	231	101	114	10.6328
GCACGUCGCUGCU	chr11:2153407-2153615(-)$1	208	1	14	9.8956
gcacacacaugca	chr11:2152733-2152936(-)$1	203	21	34	10.6328
GGGGGAAGACCCA	chr17:7476127-7476410(+)$1	283	197	210	10.6328
cucuggaaugaga	chr2:38938747-38939020(+)$1	273	26	39	9.8019
UCAAUUUUGUGAU	chr15:85191550-85191812(-)$1	262	51	64	9.2043
gcacccaccugca	chr11:2152595-2152805(-)$1	210	114	127	10.6328
cgugugugaaugu	chr2:236420635-236420908(+)$1	273	88	101	9.2705
UUUCAAAAUAGAA	chr7:882880-883147(+)$1	267	22	35	9.2705
CGGUAUUUUUUGG	chr16:8986689-8986930(-)$1	241	190	203	9.8956
GGGUCCCUUCCUU	chr16:16313066-16313376(-)$1	310	18	31	10.6328
GCACGUCGCUGCU	chr11:2153487-2153693(-)$1	206	79	92	10.9265
CCACAAAAUUGGA	chr11:2152471-2152677(-)$1	206	28	41	10.9473
CUCAAGUAGGAGA	chr9:19380013-19380256(-)$1	243	183	196	10.5211
augagcauccaug	chr6:2377905-2378155(+)$1	250	99	112	9.8956
UGUCAAUGAAUGC	chr16:31198563-31198844(+)$1	281	83	96	9.8956
GGUUAUUCCGCCU	chr3:194829973-194830270(-)$1	297	231	244	10.6328
GACGGUUCGGUCC	chr2:152684394-152684659(-)$1	265	162	175	9.8019
ugccaaugcgcau	chr16:11265595-11265882(+)$1	287	50	63	9.2705
ggcagcagcggcg	chr10:120967127-120967392(+)$1	265	202	215	9.9548
CCCGGAGUGGGGC	chr19:4034544-4034763(+)$1	219	135	148	9.8019
CCACAAAAUUGGA	chr11:2152480-2152682(-)$1	202	33	46	10.9473
gcacccaccugca	chr11:2152577-2152782(-)$1	205	91	104	10.6328
gcacacacaugca	chr11:2152758-2152965(-)$1	207	50	63	10.6328
UGUGAGGAAACAG	chr11:72423483-72423761(-)$1	278	15	28	10.6328
ACCCAAAGAGGUA	chr4:83348241-83348477(-)$1	236	40	53	10.6328
aggugcaguccug	chr19:6716905-6717178(-)$1	273	154	167	9.8956
CUGGAGCCGCGGG	chr9:137251748-137252013(+)$1	265	69	82	9.8019
AGGUUACCUCCUU	chr12:124842247-124842482(-)$1	235	39	52	10.7405
guacacauauaca	chr6:16689060-16689356(-)$1	296	80	93	10.6328
UGGGUCUGGCUGC	chr7:157581798-157582116(-)$1	318	57	70	9.2705
GCUUGGACUAGCA	chr16:89364979-89365226(-)$1	247	33	46	10.6328
ugaucacccucaa	chr3:126259032-126259320(+)$1	288	137	150	11.1085
guucauaaaaaca	chr16:89362645-89362891(-)$1	246	203	216	10.9265
AGGCGCACCCCUG	chr22:35739824-35740179(+)$1	355	284	297	10.9541
GUGUAACCCCAUC	chr6:31785233-31785539(+)$1	306	105	118	8.7109
AGGUUGUACUCUG	chr3:8676823-8677066(-)$1	243	90	103	9.8956
guccuggcagaca	chr6:159048023-159048407(+)$1	384	366	379	9.8019
CGUGCUGGGACGG	chr21:46854018-46854279(+)$1	261	206	219	9.2705
GCAGUGCUGUGUC	chr7:72855374-72855646(-)$1	272	214	227	8.5603
GGGAAGAUGCCUG	chr1:46035407-46035687(+)$1	280	85	98	11.1290
gcugcaguaagcc	chr20:32246745-32247045(-)$1	300	233	246	10.5154
CCUAAGGAGGGGG	chr9:116968090-116968351(+)$1	261	121	134	9.8956
GUUCAUACAGACA	chr1:227165151-227165405(+)$1	254	226	239	9.2043
UCAACUGUCUGAU	chr20:37153508-37153805(+)$1	297	106	119	9.8956
GCCUAAAUUGGCA	chr20:31052402-31052661(-)$1	259	188	201	11.1290
UCUGUGGGUGGGU	chr22:48982831-48983086(+)$1	255	124	137	10.9265
guacacauauaca	chr2:101458354-101458656(+)$1	302	109	122	10.6328
GCUGGAAGAGGUA	chr19:34881340-34881583(+)$1	243	38	51	9.2705
GCCCUGCUUGGCC	chr20:62324604-62324869(+)$1	265	122	135	9.2043
AGCCACAUCGCUC	chr12:6643948-6644160(+)$1	212	30	43	9.8956
agagacaauucua	chr2:101458471-101458709(+)$1	238	181	194	9.8956
CAGCCCCCACUGU	chr11:882930-883212(-)$1	282	236	249	9.8019
gcacacacaugca	chr11:2152698-2152903(-)$1	205	114	127	10.6328
UGCAUCCCCGCAG	chr11:2153241-2153446(-)$1	205	96	109	11.0346
UGAAAUCCCUCAA	chr2:230693737-230694072(-)$1	335	186	199	10.9541
AUGCUUACCCAUG	chr21:46949646-46949904(-)$1	258	27	40	9.8956
gcacacacaugca	chr11:2152717-2152922(-)$1	205	7	20	10.6328
AGGAGGGACCCUG	chr19:50363567-50363830(+)$1	263	50	63	9.8956
gcacacacaugca	chr11:2152845-2153051(-)$1	206	57	70	10.6328
ACUGAAAGAAGUC	chr6:43271547-43271808(+)$1	261	86	99	11.0346
CCCUAGAGUGGGU	chr19:798426-798682(+)$1	256	78	91	11.1290
UUCAUACUAGAAG	chr6:167417825-167418086(+)$1	261	156	169	9.2043
guccacaccgucu	chr19:4035669-4035974(+)$1	305	187	200	8.9110
gcacacacaugca	chr11:2152669-2152876(-)$1	207	87	100	10.6328

#DB
(((......))).	chr11:2159577-2159786(-)$1	1	191	204	10.6328
(((......))))	chr16:31198644-31198889(+)$1	1	88	101	9.2043
(((......))))	chr9:137278266-137278517(+)$1	1	92	105	9.8956
(((......))).	chr12:57586260-57586544(+)$1	1	136	149	10.6328
(((......))))	chr17:79232429-79232779(-)$1	1	35	48	9.8956
(((......))).	chr11:2152864-2153095(-)$1	1	101	114	10.6328
(((......))))	chr11:2153407-2153615(-)$1	1	1	14	9.8956
(((......))).	chr11:2152733-2152936(-)$1	1	21	34	10.6328
(((......))).	chr17:7476127-7476410(+)$1	1	197	210	10.6328
(((......))))	chr2:38938747-38939020(+)$1	1	26	39	9.8019
(((......))))	chr15:85191550-85191812(-)$1	1	51	64	9.2043
(((......))).	chr11:2152595-2152805(-)$1	1	114	127	10.6328
(((......))))	chr2:236420635-236420908(+)$1	1	88	101	9.2705
(((......))))	chr7:882880-883147(+)$1	1	22	35	9.2705
(((......))))	chr16:8986689-8986930(-)$1	1	190	203	9.8956
(((......))).	chr16:16313066-16313376(-)$1	1	18	31	10.6328
(((......))).	chr11:2153487-2153693(-)$1	1	79	92	10.9265
(((......)))(	chr11:2152471-2152677(-)$1	1	28	41	10.9473
(((......))))	chr9:19380013-19380256(-)$1	1	183	196	10.5211
(((......))))	chr6:2377905-2378155(+)$1	1	99	112	9.8956
(((......))))	chr16:31198563-31198844(+)$1	1	83	96	9.8956
(((......))).	chr3:194829973-194830270(-)$1	1	231	244	10.6328
(((......))))	chr2:152684394-152684659(-)$1	1	162	175	9.8019
(((......))))	chr16:11265595-11265882(+)$1	1	50	63	9.2705
(.(......).))	chr10:120967127-120967392(+)$1	1	202	215	9.9548
(((......))))	chr19:4034544-4034763(+)$1	1	135	148	9.8019
(((......)))(	chr11:2152480-2152682(-)$1	1	33	46	10.9473
(((......))).	chr11:2152577-2152782(-)$1	1	91	104	10.6328
(((......))).	chr11:2152758-2152965(-)$1	1	50	63	10.6328
(((......))).	chr11:72423483-72423761(-)$1	1	15	28	10.6328
(((......))).	chr4:83348241-83348477(-)$1	1	40	53	10.6328
(((......))))	chr19:6716905-6717178(-)$1	1	154	167	9.8956
(((......))))	chr9:137251748-137252013(+)$1	1	69	82	9.8019
(((......))).	chr12:124842247-124842482(-)$1	1	39	52	10.7405
(((......))).	chr6:16689060-16689356(-)$1	1	80	93	10.6328
(((......))))	chr7:157581798-157582116(-)$1	1	57	70	9.2705
(((......))).	chr16:89364979-89365226(-)$1	1	33	46	10.6328
(((......))).	chr3:126259032-126259320(+)$1	1	137	150	11.1085
(((......))).	chr16:89362645-89362891(-)$1	1	203	216	10.9265
(((......))))	chr22:35739824-35740179(+)$1	1	284	297	10.9541
(((......)).)	chr6:31785233-31785539(+)$1	1	105	118	8.7109
(((......))))	chr3:8676823-8677066(-)$1	1	90	103	9.8956
(((......))))	chr6:159048023-159048407(+)$1	1	366	379	9.8019
(((......))))	chr21:46854018-46854279(+)$1	1	206	219	9.2705
.((......))))	chr7:72855374-72855646(-)$1	1	214	227	8.5603
(((......))).	chr1:46035407-46035687(+)$1	1	85	98	11.1290
(((......))).	chr20:32246745-32247045(-)$1	1	233	246	10.5154
(((......))))	chr9:116968090-116968351(+)$1	1	121	134	9.8956
(((......))))	chr1:227165151-227165405(+)$1	1	226	239	9.2043
(((......))))	chr20:37153508-37153805(+)$1	1	106	119	9.8956
(((......))).	chr20:31052402-31052661(-)$1	1	188	201	11.1290
(((......))).	chr22:48982831-48983086(+)$1	1	124	137	10.9265
(((......))).	chr2:101458354-101458656(+)$1	1	109	122	10.6328
(((......))))	chr19:34881340-34881583(+)$1	1	38	51	9.2705
(((......))))	chr20:62324604-62324869(+)$1	1	122	135	9.2043
(((......))))	chr12:6643948-6644160(+)$1	1	30	43	9.8956
(((......))))	chr2:101458471-101458709(+)$1	1	181	194	9.8956
(((......))))	chr11:882930-883212(-)$1	1	236	249	9.8019
(((......))).	chr11:2152698-2152903(-)$1	1	114	127	10.6328
(((......)))(	chr11:2153241-2153446(-)$1	1	96	109	11.0346
(((......)))(	chr2:230693737-230694072(-)$1	1	186	199	10.9541
(((......))))	chr21:46949646-46949904(-)$1	1	27	40	9.8956
(((......))).	chr11:2152717-2152922(-)$1	1	7	20	10.6328
(((......))))	chr19:50363567-50363830(+)$1	1	50	63	9.8956
(((......))).	chr11:2152845-2153051(-)$1	1	57	70	10.6328
(((......)))(	chr6:43271547-43271808(+)$1	1	86	99	11.0346
(((......))).	chr19:798426-798682(+)$1	1	78	91	11.1290
(((......))))	chr6:167417825-167418086(+)$1	1	156	169	9.2043
(.(......).))	chr19:4035669-4035974(+)$1	1	187	200	8.9110
(((......))).	chr11:2152669-2152876(-)$1	1	87	100	10.6328

#PSSM
c : 0.51	d : 0.21	g : 0.08	f : 0.08	e : 0.07	[ : 0.01	b : 0.01	
c : 0.50	d : 0.20	g : 0.08	f : 0.08	e : 0.07	[ : 0.02	b : 0.02	
c : 0.50	d : 0.20	g : 0.08	f : 0.08	e : 0.07	a : 0.02	b : 0.02	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.50	d : 0.20	g : 0.08	f : 0.08	e : 0.07	a : 0.02	b : 0.02	
c : 0.50	d : 0.20	g : 0.08	f : 0.08	e : 0.07	] : 0.02	b : 0.02	
c : 0.51	d : 0.20	f : 0.10	g : 0.08	e : 0.07	] : 0.01	b : 0.01	
: : 0.27	d : 0.21	e : 0.10	f : 0.10	g : 0.08	2 : 0.04	c : 0.04	] : 0.04	i : 0.02	B : 0.01	7 : 0.01	3 : 0.01	5 : 0.01	b : 0.01	

#score	712.0820925944622
#seq	70
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_transcript_m1_run2.txt

#BEAR
hhhhhhhh!!a[cccnnnnnccc]a22hhhhhhhh2	chr21:34924550-34924823(+)$1	273	122	158	12.9658
fffffffffffddddnnnnndddd]ffffff]ffff	chr8:48769698-48769948(-)$1	250	106	142	11.9783
:iiiiiiiii[ddddnnnnndddd]iiiiiiiiiJJ	chr3:184042565-184042791(+)$1	226	160	196	11.9679
"dddd[bb[bb[cccnnnnnccc]bbbb]dddd444	chr12:120611838-120612051(-)$1	213	133	169	12.0835
a[ggggggg[eeeeennnnneeeee333ggggggga	chr1:220267620-220267869(+)$1	249	105	141	14.1814
bb[ggggggg"""cccmmmmccc]gggggggbbbbe	chr22:21800846-21801086(+)$1	240	80	116	11.4101
cccbb[cccaddddccclllccc]dddd]a]ccc]b	chrX:153579198-153579431(-)$1	233	100	136	10.8837
dccciiiiiiiii[ammmma22iiiiiiiii22ccc	chr2:48010407-48010664(+)$1	257	210	246	11.2592
GGGGggggggg[cccoooooocccgggggggccc[b	chr17:78321819-78322091(+)$1	272	113	149	11.9059
fff[a"""ccc[ddddnnnnndddd]cccaffffff	chr22:20103650-20103915(-)$1	265	120	156	12.0590
cc!!bbeeeeecccooooooccc22eeeee]bb333	chr19:18965880-18966141(+)$1	261	143	179	11.6563
[ggggggg!!bb[bbnnnnnbb]bb]ggggggg]bb	chr9:133759738-133760001(+)$1	263	24	60	13.0513
#ffffff[ccc[cccoooooocccccc]ffffffcc	chr3:184038665-184038882(+)$1	217	103	139	13.4702
ddd!!ggggggg[bbnnnnnbb]ggggggg>>>>>>	chr12:120588848-120589066(-)$1	218	57	93	11.8663
ddd[ccc[ccc[cccnnnnncccccccccddddagg	chr7:5632793-5633050(+)$1	257	122	158	14.1382
fffff[bb"""ddddnnnnndddd4444bb]fffff	chr17:7405739-7405969(+)$1	230	177	213	13.1817
c"""ccc[a[eeeeeooooooeeeeea]cccccc]a	chr21:33706454-33706732(-)$1	278	201	237	12.3261
iiiiiiiia!!cccooooooccc22a]iiiiiiiii	chr17:1562687-1562942(-)$1	255	41	77	15.2700
e[ffffff!!bbcccnnnnnccc333bb4444ffff	chr3:184017967-184018221(+)$1	254	196	232	13.7993
$==============lll==============eeee	chr11:62293167-62293421(-)$1	254	158	194	13.5789
bb!!ccc!!cccacccmmmmccc]a]ccc22ccc]b	chr8:145626270-145626536(-)$1	266	174	210	11.7925
cc[ggggggg!!cccnnnnnccc333ggggggg]cc	chr1:55680413-55680699(-)$1	286	158	194	17.0832
iiiiiii[ccc[cccnnnnnccc]ccciiiiiiiii	chr14:102510598-102510821(+)$1	223	86	122	16.7314
ggg[ccc[ccc[cccoooooocccccc]cccggggg	chrX:153589709-153589959(-)$1	250	174	210	14.7487
Bccc[bb[a[ccc[annnnna]ccc]a]bb]ccc::	chr8:144995697-144995948(-)$1	251	206	242	11.5231
eeeeffffff[ddddnnnnnddddffffff4444ee	chr1:226568688-226568929(-)$1	241	115	151	11.6449
:dddd[ccc"""cccnnnnnccc22ccc]ddddddd	chrX:47061707-47061992(+)$1	285	140	176	12.6320
iiiiiiiiiddddoooooodddd]iiiiiiiiieee	chr12:124197008-124197324(+)$1	316	133	169	12.2373
========[aeeeeellleeeee333a]========	chr12:57036461-57036688(-)$1	227	54	90	13.0756
iiiiiiiii"""ddddoooooodddd]iiiiiiiii	chr1:19443621-19443853(-)$1	232	194	230	13.5017
d[gggggggccc[bbnnnnnbbccc333ggggggg]	chrX:153578428-153578663(-)$1	235	16	52	14.8371
cccbb[cccbb[ddddllldddd333bb]ccc]bb]	chr5:154173591-154173829(+)$1	238	16	52	11.0055
cc[ffffff!!a[cccmmmmccc]affffffccc]f	chr3:184019534-184019765(+)$1	231	143	179	11.5565
ccc[ccc[ggggggglllggggggg]ccc]ccc444	chr2:96945121-96945369(-)$1	248	9	45	11.7845
a[ffffff####cccnnnnnccc4444ffffff]a7	chr10:976476-976724(-)$1	248	54	90	14.5539
ggg"""iiiiiiiiiooooooiiiiiiiiigggggg	chr1:220156567-220156787(-)$1	220	137	173	14.2346
ggg[iiiiiiiii[bbmmmmbb333iiiiiiiiigg	chr21:34922942-34923222(+)$1	280	39	75	12.5812
cc[ccc[bb!!ddddnnnnndddd]bb]ccc22ccc	chr9:35072321-35072561(-)$1	240	73	109	13.1500
[ccc===========oooooo===========4444	chr8:145624247-145624500(-)$1	253	27	63	15.1829
++iiiiiiiii[aooooooa]iiiiiiiiigggggg	chr5:154135048-154135306(+)$1	258	206	242	12.3378
c[ggggggg[cccbbnnnnnbb]ccc]ggggggg]c	chr7:72891845-72892105(-)$1	260	106	142	14.6829
ffcccbb####ddddnnnnndddd4444bb]ccc55	chr17:1577668-1577908(-)$1	240	70	106	12.2701
ffffggggggg[cccaooooooa]cccgggggggFF	chr5:139781407-139781651(+)$1	244	91	127	12.8013
eccc!!eeeee!!bbnnnnnbb4444eeeee]ccc4	chr17:1564186-1564418(-)$1	232	56	92	12.7656
bb[ccc!!cccddddnnnnndddd]ccc22ccc]bb	chr12:64798389-64798660(+)$1	271	142	178	13.1561
==========!!cccmmmmccc4444==========	chr7:150068765-150069047(+)$1	282	170	206	14.8067
dd[bb####ccc[bbnnnnnbb]ccc333bb]dddd	chr16:70590752-70591011(+)$1	259	75	111	11.6879
a[ccc[ccc[ccccccmmmmccc333ccccccccc]	chr21:45746925-45747208(+)$1	283	87	123	13.3543
$$ffffff"""ddddnnnnnddddffffff4444cc	chr16:3722660-3722921(-)$1	261	32	68	12.7237
iiiiiii[bb!!cccooooooccc4444bb]iiiii	chr2:15557719-15557936(-)$1	217	95	131	14.7542
===========[ddddoooooodddd==========	chr14:102460472-102460718(+)$1	246	20	56	14.1002
ccc!!a!!ccc[cccooooooccc22ccc22a22cc	chr12:56527848-56528065(+)$1	217	72	108	13.5725
b"""dddd[ccccccnnnnnccc22ccc]dddd333	chr11:62285335-62285591(-)$1	256	57	93	13.6985
ggggg[eeeee[cccmmmmccceeeeeggggggg]e	chr12:6692438-6692643(-)$1	205	40	76	11.0837

#otherMatches

#Seq PSSM
GAGCGCUCUAUGAUGUCCCCUAUGGCUGAGCGCUCU	chr21:34924550-34924823(+)$1	273	122	158	12.9658
AAGCACUGGCUUAGCCCCUUGCUGCAGCUGGCUGCU	chr8:48769698-48769948(-)$1	250	106	142	11.9783
CGCUCUUUAGGGAAUAUCAAGUUUAUUGGAGAGUUG	chr3:184042565-184042791(+)$1	226	160	196	11.9679
UGGGAUCGUGGCUGAGCUGUUCAUCCCGUUCCUUCA	chr12:120611838-120612051(-)$1	213	133	169	12.0835
UAGUGGCAGAUACCGGGACACGGUGCUGCUGCCGCA	chr1:220267620-220267869(+)$1	249	105	141	14.1814
UGUGCACUCGGGCGAGAAACCUUACGAGUGCCAGCU	chr22:21800846-21801086(+)$1	240	80	116	11.4101
GUGCACAGCCCCUCAGGAGCCCUGGAGGAGUGCUAU	chrX:153579198-153579431(-)$1	233	100	136	10.8837
UGCUGCCCCCACCAGGUAGCGGGGUGGGGGUGGGGU	chr2:48010407-48010664(+)$1	257	210	246	11.2592
CGUGGUCCGGCUGAGCGCCUACUCGCUGGGCGGGUU	chr17:78321819-78322091(+)$1	272	113	149	11.9059
GGGACAAGGCCCUGCGCGUUUUGCAUGGUGCCCUCU	chr22:20103650-20103915(-)$1	265	120	156	12.0590
UCUACCACCUGGCCCGGCAAGGCAACGGGUAGGGCU	chr19:18965880-18966141(+)$1	261	143	179	11.6563
AGCCGCCUAGCCACCGGCGAGGAGGAGGGCGGUGGC	chr9:133759738-133760001(+)$1	263	24	60	13.0513
AUUGUCCGGCCAGGUAAGUAAGCCGGUGGGACGGAG	chr3:184038665-184038882(+)$1	217	103	139	13.4702
GAGAUGAUGGCGGCACUGACUGAUGCCAUCCAAGAU	chr12:120588848-120589066(-)$1	218	57	93	11.8663
GACCGCCUGUCCUGCUUCGCGCAGACGGUGUCCCCC	chr7:5632793-5633050(+)$1	257	122	158	14.1382
CAGGUGGUGCAGCUGCGCUACGGCGAAGACGGCCUG	chr17:7405739-7405969(+)$1	230	177	213	13.1817
GACCGGAUGAUGCAGACCAUCCUGCACUUCCCCCAG	chr21:33706454-33706732(-)$1	278	201	237	12.3261
UCUGGGGACAUUGGUUAUGCCCAUGGUUUCUUAGAA	chr17:1562687-1562942(-)$1	255	41	77	15.2700
AAAUUUCUGCGUCCACACUAUGGCAAACUGAAGGAA	chr3:184017967-184018221(+)$1	254	196	232	13.7993
GUGGACAUUGAUGUCCCAGAUGUUAAUGUUCAGGGU	chr11:62293167-62293421(-)$1	254	158	194	13.5789
CAGGGAGAGCCUGGCUGAGGAGCACGAGGGGCUCGU	chr8:145626270-145626536(-)$1	266	174	210	11.7925
cCCCUCCCGCGGCGGGAGCACCGGAGGCGGGGGCGG	chr1:55680413-55680699(-)$1	286	158	194	17.0832
CGGGCGCGUGGACAACGAGUUUGACCAGCGUCUGCU	chr14:102510598-102510821(+)$1	223	86	122	16.7314
UCCUGCCCCGUGAGGAAGGGCCCUAUGAGGUGGAGG	chrX:153589709-153589959(-)$1	250	174	210	14.7487
CGUCAACGAGGCUGUGAAGGAGGGUGUGGUGGGCCC	chr8:144995697-144995948(-)$1	251	206	242	11.5231
UUGACGGGGACGGCCAACAAGGCUUCCCUGUGCAUC	chr1:226568688-226568929(-)$1	241	115	151	11.6449
AGGCCCUGCACCAGUUCUGUGCUCAGCAUGGCCGGC	chrX:47061707-47061992(+)$1	285	140	176	12.6320
GUGCCUGGCGCAGCUCUUCCUGCAGUCGGGCACGGC	chr12:124197008-124197324(+)$1	316	133	169	12.2373
UUAUGUAUGAUUACUGCAGGUAGCGCUGGUAUAUGG	chr12:57036461-57036688(-)$1	227	54	90	13.0756
UGCUGCCUUCGGUUCCUGGAAUGGAGUAAGGCAGCA	chr1:19443621-19443853(-)$1	232	194	230	13.5017
UGUUCCUCACAGACACCAUCUGCUGGUUUGAGGAGG	chrX:153578428-153578663(-)$1	235	16	52	14.8371
GGGGUGGUGGGCAGGAAUCUCCUCUCCCUCAUGGCA	chr5:154173591-154173829(+)$1	238	16	52	11.0055
GACGCAGAGAAGGUCCAGCGGGAGCCUCUGCUCACU	chr3:184019534-184019765(+)$1	231	143	179	11.5565
GCUUCCUGAGCAUGGUCUCCGUGUUGAGGUGGCUUU	chr2:96945121-96945369(-)$1	248	9	45	11.7845
GGAUCUGAAGGAGUUAAAAAAAUAAAGUCAGAUGUG	chr10:976476-976724(-)$1	248	54	90	14.5539
AAGGACUUUUUUGAUGCUGAGAUCAAGAAACUUGGU	chr1:220156567-220156787(-)$1	220	137	173	14.2346
UGCCUUUGGUGACAGCAGCAGUAGAGUUGCCAGAGC	chr21:34922942-34923222(+)$1	280	39	75	12.5812
GGAAGCCGCUUGCGGGUUUGUCGCCGCUGCUCGCCC	chr9:35072321-35072561(-)$1	240	73	109	13.1500
gagggggggugggggGCAUAGUCCUCACCCCCGAGU	chr8:145624247-145624500(-)$1	253	27	63	15.1829
AAGUUCGAGGCGGGGGAGGCAGCCUCGGGCGCGCCC	chr5:154135048-154135306(+)$1	258	206	242	12.3378
ACCCCUGAAGGGCUGCCCAACACGCUGUUUGGGGAU	chr7:72891845-72892105(-)$1	260	106	142	14.6829
AGAUGCCAAAUGACUUUCUCAGUUUCCAGGACAUAG	chr17:1577668-1577908(-)$1	240	70	106	12.2701
CGGCGGCGGUGACCGCGAGUGGGUCGGCACCGUCUC	chr5:139781407-139781651(+)$1	244	91	127	12.8013
UGGGCGGUGUGGAAGGCAUUCUGGAACACACACUCU	chr17:1564186-1564418(-)$1	232	56	92	12.7656
CUGGCUGACCAUCUGGAGUGCAGGCUGGGAGGCGGG	chr12:64798389-64798660(+)$1	271	142	178	13.1561
GGCCCUGGAGGAGGCCGCAGCCAAGGCUCUggggcc	chr7:150068765-150069047(+)$1	282	170	206	14.8067
CAGCCUGAGUCCUUGUGUAUCGUGGAAAUGGGUGGG	chr16:70590752-70591011(+)$1	259	75	111	11.6879
UUUGGAGGCUGCUGCCCCCUGGCUUUGGCGCCCCAU	chr21:45746925-45747208(+)$1	283	87	123	13.3543
CACCUCCCAGCCAGGGCCUGCCUGGGGAGGGUCAGU	chr16:3722660-3722921(-)$1	261	32	68	12.7237
UUUAGGUGGACUGUGCAUUGUCACUUAUUCGACUUG	chr2:15557719-15557936(-)$1	217	95	131	14.7542
UGCAUUCAUUUCGGCUUUGGUUGGCUAGGUGGGUGU	chr14:102460472-102460718(+)$1	246	20	56	14.1002
CCUAUGGUACAACUGUCAAUUCAGGAUGUGACUCAG	chr12:56527848-56528065(+)$1	217	72	108	13.5725
UGGACUUUAACUUGGAAGGACCAAAAGUGAAAGGGA	chr11:62285335-62285591(-)$1	256	57	93	13.6985
GGGGUAGCUGGUGGUGCUGACUUCAGCACUCCUGAG	chr12:6692438-6692643(-)$1	205	40	76	11.0837

#DB
((((((((..(.(((.....))).)..)))))))).	chr21:34924550-34924823(+)$1	1	122	158	12.9658
(((((((((((((((.....)))).)))))).))))	chr8:48769698-48769948(-)$1	1	106	142	11.9783
.(((((((((.((((.....)))).)))))))))))	chr3:184042565-184042791(+)$1	1	160	196	11.9679
.((((.((.((.(((.....))).)))).))))...	chr12:120611838-120612051(-)$1	1	133	169	12.0835
(.(((((((.(((((.....)))))...))))))))	chr1:220267620-220267869(+)$1	1	105	141	14.1814
((.(((((((...(((....))).))))))))))))	chr22:21800846-21801086(+)$1	1	80	116	11.4101
(((((.(((((((((((...))).)))).).))).)	chrX:153579198-153579431(-)$1	1	100	136	10.8837
(((((((((((((.(....)..)))))))))..)))	chr2:48010407-48010664(+)$1	1	210	246	11.2592
(((((((((((.(((......))))))))))(((.(	chr17:78321819-78322091(+)$1	1	113	149	11.9059
(((.(...(((.((((.....)))).))))))))))	chr22:20103650-20103915(-)$1	1	120	156	12.0590
((..((((((((((......)))..))))).))...	chr19:18965880-18966141(+)$1	1	143	179	11.6563
.(((((((..((.((.....)).)).))))))).))	chr9:133759738-133760001(+)$1	1	24	60	13.0513
.((((((.(((.(((......)))))).))))))))	chr3:184038665-184038882(+)$1	1	103	139	13.4702
(((..(((((((.((.....)).)))))))......	chr12:120588848-120589066(-)$1	1	57	93	11.8663
(((.(((.(((.(((.....))))))))))))))))	chr7:5632793-5633050(+)$1	1	122	158	14.1382
(((((.((...((((.....))))....)).)))))	chr17:7405739-7405969(+)$1	1	177	213	13.1817
(...(((.(.(((((......)))))).)))))).)	chr21:33706454-33706732(-)$1	1	201	237	12.3261
(((((((((..(((......)))..).)))))))))	chr17:1562687-1562942(-)$1	1	41	77	15.2700
(.((((((..(((((.....)))...))....))))	chr3:184017967-184018221(+)$1	1	196	232	13.7993
.((((((((((((((...))))))))))))))))))	chr11:62293167-62293421(-)$1	1	158	194	13.5789
((..(((..(((((((....))).).)))..))).)	chr8:145626270-145626536(-)$1	1	174	210	11.7925
((.(((((((..(((.....)))...))))))).))	chr1:55680413-55680699(-)$1	1	158	194	17.0832
(((((((.(((.(((.....))).))))))))))))	chr14:102510598-102510821(+)$1	1	86	122	16.7314
(((.(((.(((.(((......)))))).))))))))	chrX:153589709-153589959(-)$1	1	174	210	14.7487
)(((.((.(.(((.(.....).))).).)).)))..	chr8:144995697-144995948(-)$1	1	206	242	11.5231
((((((((((.((((.....))))))))))....))	chr1:226568688-226568929(-)$1	1	115	151	11.6449
.((((.(((...(((.....)))..))).))))(((	chrX:47061707-47061992(+)$1	1	140	176	12.6320
(((((((((((((......)))).)))))))))(((	chr12:124197008-124197324(+)$1	1	133	169	12.2373
((((((((.((((((...)))))...).))))))))	chr12:57036461-57036688(-)$1	1	54	90	13.0756
(((((((((...((((......)))).)))))))))	chr1:19443621-19443853(-)$1	1	194	230	13.5017
(.((((((((((.((.....)))))...))))))).	chrX:153578428-153578663(-)$1	1	16	52	14.8371
(((((.(((((.((((...))))...)).))).)).	chr5:154173591-154173829(+)$1	1	16	52	11.0055
((.((((((..(.(((....))).)))))))))).)	chr3:184019534-184019765(+)$1	1	143	179	11.5565
(((.(((.(((((((...))))))).))).)))...	chr2:96945121-96945369(-)$1	1	9	45	11.7845
(.((((((....(((.....)))....)))))).).	chr10:976476-976724(-)$1	1	54	90	14.5539
(((...(((((((((......)))))))))))))))	chr1:220156567-220156787(-)$1	1	137	173	14.2346
(((.(((((((((.((....))...)))))))))))	chr21:34922942-34923222(+)$1	1	39	75	12.5812
((.(((.((..((((.....)))).)).)))..)))	chr9:35072321-35072561(-)$1	1	73	109	13.1500
.((((((((((((((......)))))))))))....	chr8:145624247-145624500(-)$1	1	27	63	15.1829
..(((((((((.(......).)))))))))))))))	chr5:154135048-154135306(+)$1	1	206	242	12.3378
(.(((((((.(((((.....)).))).))))))).)	chr7:72891845-72892105(-)$1	1	106	142	14.6829
(((((((....((((.....))))....)).)))..	chr17:1577668-1577908(-)$1	1	70	106	12.2701
))))(((((((.((((......).))))))))))))	chr5:139781407-139781651(+)$1	1	91	127	12.8013
((((..(((((..((.....))....))))).))).	chr17:1564186-1564418(-)$1	1	56	92	12.7656
((.(((..(((((((.....)))).)))..))).))	chr12:64798389-64798660(+)$1	1	142	178	13.1561
((((((((((..(((....)))....))))))))))	chr7:150068765-150069047(+)$1	1	170	206	14.8067
((.((....(((.((.....)).)))...)).))))	chr16:70590752-70591011(+)$1	1	75	111	11.6879
(.(((.(((.((((((....)))...))))))))).	chr21:45746925-45747208(+)$1	1	87	123	13.3543
..((((((...((((.....))))))))))....))	chr16:3722660-3722921(-)$1	1	32	68	12.7237
(((((((.((..(((......)))....)).)))))	chr2:15557719-15557936(-)$1	1	95	131	14.7542
(((((((((((.((((......))))))))))))))	chr14:102460472-102460718(+)$1	1	20	56	14.1002
(((..(..(((.(((......)))..)))..)..))	chr12:56527848-56528065(+)$1	1	72	108	13.5725
(...((((.((((((.....)))..))).))))...	chr11:62285335-62285591(-)$1	1	57	93	13.6985
(((((.(((((.(((....))))))))))))))).)	chr12:6692438-6692643(-)$1	1	40	76	11.0837

#PSSM
c : 0.18	f : 0.09	d : 0.09	i : 0.09	b : 0.07	g : 0.07	a : 0.05	e : 0.05	= : 0.05	: : 0.03	[ : 0.03	$ : 0.03	h : 0.01	" : 0.01	G : 0.01	# : 0.01	B : 0.01	+ : 0.01	
c : 0.22	f : 0.11	i : 0.11	[ : 0.11	d : 0.09	g : 0.09	= : 0.07	b : 0.05	" : 0.03	h : 0.01	G : 0.01	e : 0.01	+ : 0.01	$ : 0.01	
c : 0.18	f : 0.14	g : 0.14	i : 0.12	[ : 0.11	d : 0.07	= : 0.07	! : 0.03	" : 0.03	h : 0.01	G : 0.01	e : 0.01	
f : 0.14	c : 0.14	i : 0.12	g : 0.12	[ : 0.09	! : 0.07	= : 0.07	b : 0.05	" : 0.05	d : 0.03	h : 0.01	G : 0.01	e : 0.01	
i : 0.16	g : 0.16	c : 0.16	f : 0.14	= : 0.09	b : 0.07	d : 0.05	! : 0.05	h : 0.01	a : 0.01	[ : 0.01	" : 0.01	
i : 0.16	g : 0.16	f : 0.12	[ : 0.12	c : 0.12	= : 0.09	b : 0.05	" : 0.03	h : 0.01	! : 0.01	# : 0.01	a : 0.01	d : 0.01	
i : 0.18	g : 0.16	c : 0.16	f : 0.12	= : 0.09	b : 0.07	e : 0.05	! : 0.03	h : 0.01	" : 0.01	[ : 0.01	# : 0.01	d : 0.01	
g : 0.16	i : 0.14	[ : 0.14	f : 0.11	= : 0.09	c : 0.07	b : 0.05	e : 0.05	! : 0.05	# : 0.03	h : 0.01	" : 0.01	d : 0.01	
c : 0.20	g : 0.16	i : 0.12	! : 0.07	= : 0.07	f : 0.05	[ : 0.05	e : 0.05	a : 0.05	# : 0.05	" : 0.03	b : 0.03	
c : 0.20	! : 0.11	g : 0.11	i : 0.09	[ : 0.09	" : 0.07	= : 0.07	b : 0.05	e : 0.05	f : 0.03	a : 0.03	# : 0.03	d : 0.01	
c : 0.25	e : 0.11	! : 0.11	" : 0.09	b : 0.07	i : 0.07	g : 0.07	= : 0.05	[ : 0.03	d : 0.03	# : 0.03	a : 0.01	f : 0.01	
[ : 0.25	d : 0.18	c : 0.16	! : 0.07	e : 0.05	" : 0.05	i : 0.05	b : 0.03	g : 0.03	= : 0.03	a : 0.01	# : 0.01	
c : 0.40	d : 0.25	[ : 0.09	e : 0.05	i : 0.05	= : 0.03	a : 0.03	" : 0.01	g : 0.01	! : 0.01	
c : 0.42	d : 0.24	b : 0.11	e : 0.05	[ : 0.05	= : 0.03	o : 0.03	g : 0.01	i : 0.01	
c : 0.40	d : 0.22	b : 0.12	o : 0.07	e : 0.05	a : 0.03	= : 0.03	g : 0.01	i : 0.01	
n : 0.46	o : 0.22	c : 0.09	d : 0.07	m : 0.05	l : 0.05	b : 0.01	a : 0.01	
n : 0.48	o : 0.27	m : 0.14	l : 0.07	c : 0.01	
n : 0.48	o : 0.27	m : 0.14	l : 0.09	
n : 0.48	o : 0.27	m : 0.14	l : 0.03	= : 0.01	e : 0.01	g : 0.01	
n : 0.48	o : 0.24	m : 0.09	a : 0.03	d : 0.03	c : 0.03	l : 0.01	= : 0.01	e : 0.01	g : 0.01	
c : 0.33	o : 0.20	d : 0.18	b : 0.12	e : 0.03	2 : 0.01	n : 0.01	= : 0.01	a : 0.01	g : 0.01	] : 0.01	
c : 0.42	d : 0.20	b : 0.12	e : 0.05	o : 0.05	= : 0.03	i : 0.03	2 : 0.01	] : 0.01	g : 0.01	
c : 0.42	d : 0.24	e : 0.07	] : 0.07	i : 0.05	= : 0.03	4 : 0.03	g : 0.01	3 : 0.01	a : 0.01	
d : 0.20	c : 0.18	] : 0.16	3 : 0.11	2 : 0.07	e : 0.05	i : 0.05	4 : 0.05	g : 0.03	= : 0.03	b : 0.01	
c : 0.16	4 : 0.11	3 : 0.11	2 : 0.09	] : 0.07	g : 0.07	d : 0.07	i : 0.07	a : 0.05	e : 0.05	b : 0.03	= : 0.03	f : 0.03	
c : 0.18	3 : 0.12	i : 0.11	4 : 0.11	] : 0.09	f : 0.07	g : 0.05	d : 0.05	e : 0.05	2 : 0.03	b : 0.03	= : 0.03	a : 0.01	
c : 0.24	i : 0.11	g : 0.09	f : 0.07	b : 0.07	4 : 0.07	= : 0.07	3 : 0.05	e : 0.05	a : 0.05	] : 0.05	2 : 0.01	d : 0.01	
i : 0.16	c : 0.16	g : 0.14	] : 0.11	f : 0.09	= : 0.07	b : 0.05	3 : 0.05	4 : 0.05	e : 0.03	h : 0.01	d : 0.01	
g : 0.18	i : 0.16	c : 0.16	f : 0.11	] : 0.09	= : 0.09	b : 0.07	e : 0.03	h : 0.01	4 : 0.01	2 : 0.01	3 : 0.01	
g : 0.18	i : 0.16	f : 0.11	b : 0.09	c : 0.09	= : 0.09	d : 0.07	2 : 0.05	a : 0.03	e : 0.03	h : 0.01	4 : 0.01	] : 0.01	
g : 0.20	i : 0.12	c : 0.12	] : 0.11	f : 0.09	= : 0.09	d : 0.07	4 : 0.05	2 : 0.03	h : 0.01	> : 0.01	e : 0.01	b : 0.01	
c : 0.20	g : 0.18	i : 0.12	= : 0.09	d : 0.07	f : 0.07	] : 0.05	4 : 0.05	b : 0.03	2 : 0.03	h : 0.01	> : 0.01	a : 0.01	
c : 0.20	g : 0.18	i : 0.12	f : 0.11	d : 0.09	2 : 0.05	4 : 0.05	= : 0.05	b : 0.03	h : 0.01	> : 0.01	e : 0.01	] : 0.01	
c : 0.20	g : 0.14	i : 0.11	f : 0.09	4 : 0.09	] : 0.07	= : 0.05	b : 0.03	3 : 0.03	e : 0.03	d : 0.03	h : 0.01	> : 0.01	a : 0.01	2 : 0.01	
c : 0.14	g : 0.12	] : 0.11	f : 0.07	b : 0.07	i : 0.07	4 : 0.05	e : 0.05	= : 0.05	3 : 0.03	d : 0.03	h : 0.01	J : 0.01	[ : 0.01	> : 0.01	: : 0.01	a : 0.01	5 : 0.01	F : 0.01	
c : 0.12	f : 0.09	e : 0.09	b : 0.09	g : 0.09	4 : 0.07	i : 0.07	= : 0.05	] : 0.05	a : 0.03	3 : 0.03	d : 0.03	2 : 0.01	J : 0.01	> : 0.01	: : 0.01	7 : 0.01	5 : 0.01	F : 0.01	

#score	704.6876420742982
#seq	54
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_transcript_m1_run1.txt

#BEAR
b[===========bblllbb]===========]bbhhh	chr16:78247742-78247956(+)$1	214	24	62	11.3872
gggggccc!!ddddoooooodddd333ccc7777777g	chr14:24113938-24114166(+)$1	228	82	120	11.4226
!===========qqqqqqqq===========22ccc]b	chr6:144812014-144812262(+)$1	248	109	147	12.6104
[bb!!==========nnnnn==========>>>>>>>>	chr17:27050387-27050607(+)$1	220	57	95	13.0786
[gggggggbb[cccooooooccc]bb]ggggggg22ee	chr19:893455-893690(+)$1	235	183	221	13.3428
gggggg[eeeee!!ccclllccc22eeeee]ggggggg	chr16:2820155-2820393(+)$1	238	12	50	10.6553
iii!!ccc####bboooooobb22ccc22iiiiiiiii	chr1:245027002-245027293(-)$1	291	29	67	14.0236
iii[a!!a!!ddddrrrrrrrrrdddd22a22a]iiii	chr20:43029850-43030149(+)$1	299	37	75	13.4150
[bb[a[dddd[cccoooooocccdddd]abbbb]iiii	chr3:52836262-52836495(+)$1	233	15	53	12.7766
e!!a!!dddd[cccoooooocccdddd22a22eeeee3	chr20:60913185-60913422(-)$1	237	35	73	15.2578
dd!!a[ccceeeeeooooooeeeee]ccca22dddd::	chr17:19091320-19091530(+)$1	210	127	165	13.0703
^^^^^^^^^^^^^^^^^^^^==========22gggggg	chr20:60885227-60885462(-)$1	235	62	100	10.8889
==============oooooo==============dddd	chr8:124381215-124381517(-)$1	302	55	93	16.9780
cc####ddddssssssssssdddd333ccc4444dddd	chr9:116931317-116931552(+)$1	235	75	113	10.7503
========="""bboooooobb]==========::fff	chr9:116929961-116930193(+)$1	232	86	124	14.0989
==========[cccpppppppccc]============F	chr17:18965302-18965546(+)$1	244	113	151	11.8094
e!!a!!dddd[cccoooooocccdddd22a22eeeee3	chr20:60913242-60913494(-)$1	252	107	145	15.2578
gggg==========oooooo==========333ggggg	chr10:101996705-101996946(-)$1	241	60	98	18.1550
:dddddddd[eeeeeooooooeeeeedddd333dddd:	chr17:19091317-19091520(+)$1	203	86	124	11.0578
dddd"""ffffff[ccclllccc]ffffff333dddd0	chr1:40041677-40041927(-)$1	250	110	148	10.9377
dd!!a[ccceeeeeooooooeeeee]ccca22dddd::	chr17:19091310-19091513(+)$1	203	137	175	13.0703
####eeeee!!cccooooooccc22eeeee333eeeee	chr1:67880748-67881031(-)$1	283	19	57	15.6088
ddd"""bb[a[cccrrrrrrrrrccc]a]bb]ddddFF	chr16:28846373-28846609(+)$1	236	110	148	11.5093
[ccc[ccc####bbvvvvvvvvvvvvvbb4444ccc]c	chr17:7082235-7082519(-)$1	284	5	43	11.7791
####ggggggg[cccnnnnncccggggggg22eeeee]	chr20:60913524-60913760(-)$1	236	44	82	12.7119
dd!!a[ccceeeeeooooooeeeee]ccca22dddd]b	chr17:19093334-19093559(-)$1	225	120	158	14.5254
"""ccc[ccc"""ddddlllddddcccccc333dddd2	chr3:48456292-48456542(-)$1	250	192	230	12.1919
"""bb!!gggggggooooooggggggg22bb666666e	chr9:100777605-100777868(+)$1	263	16	54	11.0746
ccc####bb!!cccwwwwwwwwwwwwwwccc22bb444	chr9:108328022-108328293(+)$1	271	208	246	10.4898
:dddddddd[eeeeeooooooeeeeedddd333dddd:	chr17:19091288-19091510(+)$1	222	115	153	11.0578
$$$$dddd!!ddddoooooodddd]ddddeeeee]ccc	chr2:232326498-232326771(-)$1	273	31	69	11.6527
a!!iiiiiiiiirrrrrrrrriiiiiiiii22a22ddd	chr9:116958164-116958379(+)$1	215	56	94	13.8896
!!ddddeeeeecccooooooccc22eeeee4444dddd	chr17:1665246-1665480(+)$1	234	96	134	13.8382
gggggg####ffffffooooooffffff4444gggggg	chr19:51857296-51857633(-)$1	337	197	235	12.2724
[ccc####ffffffooooooffffff22ccc]a4444i	chr1:171510113-171510367(+)$1	254	86	124	12.9025
ddddddd####cccvvvvvvvvvvvvvccc333dddd]	chr20:60913433-60913664(-)$1	231	146	184	12.3619
ccc"""dddd[ddddoooooodddd]dddd333cccHH	chr20:26189907-26190135(-)$1	228	182	220	13.2002
eee[iiiiiiiiivvvvvvvvvvvvviiiiiiiii]ee	chr2:159313486-159313829(+)$1	343	141	179	11.4582
bb[eeeee"""cccooooooccc333eeeeebb22eee	chr11:62622040-62622257(-)$1	217	87	125	13.0607
fff[a[ggggggg[annnnna]ggggggg]a22fffff	chr16:89959071-89959307(+)$1	236	177	215	11.1826
bb!!dddd####bboooooobb22dddd4444bb]iii	chr16:30087575-30087857(+)$1	282	185	223	13.2190
deeeee$$$$$cccooooooccc4444eeeee]dddd:	chr1:173835345-173835589(-)$1	244	107	145	12.4136
=======####cccooooooccc22==========eee	chr11:67810715-67811052(+)$1	337	285	323	16.8967
ebb!!===========lll===========22bb4444	chr16:2015089-2015396(+)$1	307	53	91	14.4247
gggg!!==========mmmm==========]ggggggg	chr4:53578775-53579007(+)$1	232	87	125	13.6043
"gggggggaddddcccmmmmccc]dddd]a]ggggggg	chr20:26189890-26190107(-)$1	217	72	110	10.2907
dd==========[ddddllldddd]==========FFF	chr12:26985754-26986012(-)$1	258	23	61	11.6695
$eeeee"""ccc[bbnnnnnbbccceeeee333bbfff	chr1:173834950-173835198(-)$1	248	69	107	10.4029
gccc!!bb"""ddddmmmmdddd4444bb4444ccc]g	chr2:27606290-27606569(-)$1	279	43	81	11.1512
dd!!a[ccceeeeeooooooeeeee]ccca22dddd]b	chr17:19091330-19091536(+)$1	206	117	155	14.5254
ggggg####bb[bboooooobbbb333ggggggg22cc	chr2:54874193-54874494(+)$1	301	229	267	12.9216
eeea!!eeeeeccc[ccclllccc333ccc22eeeee2	chr15:25330616-25330942(+)$1	326	191	229	11.2946
======"""bboooooobb]==========333ggggg	chr9:116930028-116930252(+)$1	224	22	60	13.3646
bbiiiiiiiii[bbrrrrrrrrrbbiiiiiiiii]bbe	chr9:116994001-116994239(+)$1	238	135	173	11.4392
eeee!!dddd!!bbrrrrrrrrrbb22dddd22eeeee	chr14:102549353-102549619(-)$1	266	38	76	10.9517

#otherMatches

#Seq PSSM
GGCUUCUGGGGCCCCCAGGGCGGUUUCAGGAGGCUGUC	chr16:78247742-78247956(+)$1	214	24	62	11.3872
CUUCCCUUUGCCCAGUUUCAUGGGAAUGAGUCUCUCUG	chr14:24113938-24114166(+)$1	228	82	120	11.4226
GCAGCGCAUGCUGGACUGCAAGCGUGUGCUGGAUGGCG	chr6:144812014-144812262(+)$1	248	109	147	12.6104
CUGGGCUAAUGAUGGAAAAAUCAUUAUUGGAAAAGAAU	chr17:27050387-27050607(+)$1	220	57	95	13.0786
ccaggcuggaaugcaauggcgcgaucuuagcuuguugc	chr19:893455-893690(+)$1	235	183	221	13.3428
gccugcccacugggcacucgguggaugGUGUGCGGGCG	chr16:2820155-2820393(+)$1	238	12	50	10.6553
GCCGACUCGGGCCCGAUGGAGGAGGAGGAGGCCGCCUC	chr1:245027002-245027293(-)$1	291	29	67	14.0236
CAGAGGACGGUUUGAAAGGAAGGCAGAGAGGGCACUGG	chr20:43029850-43030149(+)$1	299	37	75	13.4150
UGGAUGCCCAGCUGCAGCAUCAGUGGGAGCCUGACCUG	chr3:52836262-52836495(+)$1	233	15	53	12.7766
UGUGACCCUGACACAGGCCAGUGCAGGUGCCGAGUGGG	chr20:60913185-60913422(-)$1	237	35	73	15.2578
cuuucuggcguugcuuggcugcaacugccgucagccau	chr17:19091320-19091530(+)$1	210	127	165	13.0703
CCCUUUCUUCUCCAUCACAACCCCUCCCCGCAGACCUC	chr20:60885227-60885462(-)$1	235	62	100	10.8889
auauauauauauauauacaaauauauauauauauUUCU	chr8:124381215-124381517(-)$1	302	55	93	16.9780
GCACCUGCCGUCCCCACUCCUGGCUCAGCUCCCACUGG	chr9:116931317-116931552(+)$1	235	75	113	10.7503
GUCGGGCUUCAUCUUUACGCAGCGGGCCCGGCUCCAGG	chr9:116929961-116930193(+)$1	232	86	124	14.0989
gagggagagaacgcggucugagugguUUUUCCUUCUUG	chr17:18965302-18965546(+)$1	244	113	151	11.8094
UGUGACCCUGACACAGGCCAGUGCAGGUGCCGAGUGGG	chr20:60913242-60913494(-)$1	252	107	145	15.2578
CUUACAGACAGGCUGACACAGGCUUGUCUGGCCUGAGG	chr10:101996705-101996946(-)$1	241	60	98	18.1550
ccacgaggaagagagguagcguuuucuccugagcguga	chr17:19091317-19091520(+)$1	203	86	124	11.0578
GCGGCCGUGGGAGCCGGCCCCCGCCUCCCGUUUCCGUC	chr1:40041677-40041927(-)$1	250	110	148	10.9377
cuuucuggcguugcuuggcugcaacugccgucagccau	chr17:19091310-19091513(+)$1	203	137	175	13.0703
AAGAUUCGGUUAUGGACCAUCAUUUCCGGAAGCCAGCA	chr1:67880748-67881031(-)$1	283	19	57	15.6088
CAGCCUACCCCCCAAGCCCUUUAUGGUGAGUCCUGCGC	chr16:28846373-28846609(+)$1	236	110	148	11.5093
GAGCAAGUAAAAUGGGAAGAGAGGUGGCGGGAGGCUGG	chr17:7082235-7082519(-)$1	284	5	43	11.7791
UACUGGGGUCUGCAGGGCAUCUGAGACUCCCCUGCCUG	chr20:60913524-60913760(-)$1	236	44	82	12.7119
cuuucuggcguugcuuggcugcaacugccgucagccau	chr17:19093334-19093559(-)$1	225	120	158	14.5254
UCCUUGACAACCUGGUCUUUGACUUUGCAACACUGAAC	chr3:48456292-48456542(-)$1	250	192	230	12.1919
AAGUCAAUUUUUGUUACUGUACagaggaggaagaaggu	chr9:100777605-100777868(+)$1	263	16	54	11.0746
ucucagaccacagugcaaucaaacuagaacucaggauu	chr9:108328022-108328293(+)$1	271	208	246	10.4898
ccacgaggaagagagguagcguuuucuccugagcguga	chr17:19091288-19091510(+)$1	222	115	153	11.0578
UUUAUUCUCAAGGUCGUCAUACCUCAGAAGAAAGGCAA	chr2:232326498-232326771(-)$1	273	31	69	11.6527
CUUGUCUGUGUCUUCCAGGGUGACAUGGGCUUGCCUGG	chr9:116958164-116958379(+)$1	215	56	94	13.8896
GGAGCCCCCUCAGUGUGCAGGCUUAGAGGGACUAGGCU	chr17:1665246-1665480(+)$1	234	96	134	13.8382
AUCGCCGUCAGCUGUGGGCCUGCACAGUGCCAGGUGAU	chr19:51857296-51857633(-)$1	337	197	235	12.2724
GGUCGAAGCUAUAGAGGUUCUUAUGGAGGGCGUGGCAG	chr1:171510113-171510367(+)$1	254	86	124	12.9025
UCCCCUCUCCCCGCUCAACCUCUACCUGCGCUCGAGGU	chr20:60913433-60913664(-)$1	231	146	184	12.3619
GGAAGGGCGCCCGCCUGGUCCGGCGAGCGCACGUCCGG	chr20:26189907-26190135(-)$1	228	182	220	13.2002
cgccgcggcACUUUUUUAAUUUUUUCGGGUGCCGCAGC	chr2:159313486-159313829(+)$1	343	141	179	11.4582
ACUGUCAGAUGAUUUGAAUUGAUAAGCUGAUGUUCUGU	chr11:62622040-62622257(-)$1	217	87	125	13.0607
GCAAGGACAGCUUGUGGGAAGGGAGCUGUGUGGUGCCC	chr16:89959071-89959307(+)$1	236	177	215	11.1826
GGAGAGCGAAGUCAAGGCCCUGUGCGCUAAGGCCAGGU	chr16:30087575-30087857(+)$1	282	185	223	13.2190
GCAGAUUUAAUCAUGAAGAGAUGUACUAUCUGUCUGAU	chr1:173835345-173835589(-)$1	244	107	145	12.4136
GAGCGGGACCCCAGAGUCAGCUGAGCCUGCUCUGCAGG	chr11:67810715-67811052(+)$1	337	285	323	16.8967
GCGUUGACCACUGGCGUCUCGCUGGUGGUCUUCGAGAC	chr16:2015089-2015396(+)$1	307	53	91	14.4247
gcccggggggcgggcggcggugcccgucccggggcUGC	chr4:53578775-53579007(+)$1	232	87	125	13.6043
GUCCGCGCGUGGGUCCUGAGGGAGCUCGUCGGUGUGGG	chr20:26189890-26190107(-)$1	217	72	110	10.2907
UGCCGGGGAGGCGGCGGCGGCUGCGGCUUCUCUGGGCG	chr12:26985754-26986012(-)$1	258	23	61	11.6695
GGUCUUAAUUAGCUCUAACUGACUAAAGGCAUUUGUUA	chr1:173834950-173835198(-)$1	248	69	107	10.4029
ACAUCAGUGAGGAACGCAUGUUCAGAAGCCCCCAUGAU	chr2:27606290-27606569(-)$1	279	43	81	11.1512
cuuucuggcguugcuuggcugcaacugccgucagccau	chr17:19091330-19091536(+)$1	206	117	155	14.5254
GACCCGGCUCUCGAUUCCUCUCAGUUAGGGUCUCUUGC	chr2:54874193-54874494(+)$1	301	229	267	12.9216
GUACCACACAUGCUGUCCGCAGGAGUAGGUGAAUGUGC	chr15:25330616-25330942(+)$1	326	191	229	11.2946
GGGCUUCAUCUUUACGCAGCGGGCCCGGCUCCAGGCUC	chr9:116930028-116930252(+)$1	224	22	60	13.3646
AGGUGAUAAGGUGAUCUGAAUACUCCCUUAUUGCACUG	chr9:116994001-116994239(+)$1	238	135	173	11.4392
CUUAGAAGUGAUCUAUAUGAUUGAGCCCAUUGAUGAGU	chr14:102549353-102549619(-)$1	266	38	76	10.9517

#DB
(.(((((((((((((...)).))))))))))).)))))	chr16:78247742-78247956(+)$1	1	24	62	11.3872
((((((((..((((......))))...))).......)	chr14:24113938-24114166(+)$1	1	82	120	11.4226
.(((((((((((........)))))))))))..))).)	chr6:144812014-144812262(+)$1	1	109	147	12.6104
.((..((((((((((.....))))))))))........	chr17:27050387-27050607(+)$1	1	57	95	13.0786
.(((((((((.(((......))).)).)))))))..))	chr19:893455-893690(+)$1	1	183	221	13.3428
((((((.(((((..(((...)))..))))).)))))))	chr16:2820155-2820393(+)$1	1	12	50	10.6553
(((..(((....((......))..)))..)))))))))	chr1:245027002-245027293(-)$1	1	29	67	14.0236
(((.(..(..((((.........))))..)..).))))	chr20:43029850-43030149(+)$1	1	37	75	13.4150
.((.(.((((.(((......))))))).))))).))))	chr3:52836262-52836495(+)$1	1	15	53	12.7766
(..(..((((.(((......)))))))..)..))))).	chr20:60913185-60913422(-)$1	1	35	73	15.2578
((..(.((((((((......))))).))))..))))..	chr17:19091320-19091530(+)$1	1	127	165	13.0703
....................))))))))))..))))))	chr20:60885227-60885462(-)$1	1	62	100	10.8889
((((((((((((((......))))))))))))))((((	chr8:124381215-124381517(-)$1	1	55	93	16.9780
((....((((..........))))...)))....))))	chr9:116931317-116931552(+)$1	1	75	113	10.7503
(((((((((...((......)).))))))))))..(((	chr9:116929961-116930193(+)$1	1	86	124	14.0989
((((((((((.(((.......))).)))))))))))))	chr17:18965302-18965546(+)$1	1	113	151	11.8094
(..(..((((.(((......)))))))..)..))))).	chr20:60913242-60913494(-)$1	1	107	145	15.2578
((((((((((((((......))))))))))...)))))	chr10:101996705-101996946(-)$1	1	60	98	18.1550
.((((((((.(((((......)))))))))...)))).	chr17:19091317-19091520(+)$1	1	86	124	11.0578
((((...((((((.(((...))).))))))...)))).	chr1:40041677-40041927(-)$1	1	110	148	10.9377
((..(.((((((((......))))).))))..))))..	chr17:19091310-19091513(+)$1	1	137	175	13.0703
....(((((..(((......)))..)))))...)))))	chr1:67880748-67881031(-)$1	1	19	57	15.6088
(((...((.(.(((.........))).).)).))))))	chr16:28846373-28846609(+)$1	1	110	148	11.5093
.(((.(((....((.............))....))).)	chr17:7082235-7082519(-)$1	1	5	43	11.7791
....(((((((.(((.....))))))))))..))))).	chr20:60913524-60913760(-)$1	1	44	82	12.7119
((..(.((((((((......))))).))))..)))).)	chr17:19093334-19093559(-)$1	1	120	158	14.5254
...(((.(((...((((...))))))))))...)))).	chr3:48456292-48456542(-)$1	1	192	230	12.1919
...((..(((((((......)))))))..))......)	chr9:100777605-100777868(+)$1	1	16	54	11.0746
(((....((..(((..............)))..))...	chr9:108328022-108328293(+)$1	1	208	246	10.4898
.((((((((.(((((......)))))))))...)))).	chr17:19091288-19091510(+)$1	1	115	153	11.0578
....((((..((((......)))).))))))))).)))	chr2:232326498-232326771(-)$1	1	31	69	11.6527
(..(((((((((.........)))))))))..)..)))	chr9:116958164-116958379(+)$1	1	56	94	13.8896
..((((((((((((......)))..)))))....))))	chr17:1665246-1665480(+)$1	1	96	134	13.8382
((((((....((((((......))))))....))))))	chr19:51857296-51857633(-)$1	1	197	235	12.2724
.(((....((((((......))))))..))).)....)	chr1:171510113-171510367(+)$1	1	86	124	12.9025
(((((((....(((.............)))...)))).	chr20:60913433-60913664(-)$1	1	146	184	12.3619
(((...((((.((((......)))).))))...)))))	chr20:26189907-26190135(-)$1	1	182	220	13.2002
(((.(((((((((.............))))))))).))	chr2:159313486-159313829(+)$1	1	141	179	11.4582
((.(((((...(((......)))...)))))))..)))	chr11:62622040-62622257(-)$1	1	87	125	13.0607
(((.(.(((((((.(.....).))))))).)..)))))	chr16:89959071-89959307(+)$1	1	177	215	11.1826
((..((((....((......))..))))....)).)))	chr16:30087575-30087857(+)$1	1	185	223	13.2190
((((((.....(((......)))....))))).)))).	chr1:173835345-173835589(-)$1	1	107	145	12.4136
(((((((....(((......)))..)))))))))))))	chr11:67810715-67811052(+)$1	1	285	323	16.8967
(((..(((((((((((...)))))))))))..))....	chr16:2015089-2015396(+)$1	1	53	91	14.4247
((((..((((((((((....)))))))))).)))))))	chr4:53578775-53579007(+)$1	1	87	125	13.6043
.(((((((((((((((....))).)))).).)))))))	chr20:26189890-26190107(-)$1	1	72	110	10.2907
))((((((((((.((((...)))).))))))))))(((	chr12:26985754-26986012(-)$1	1	23	61	11.6695
.(((((...(((.((.....))))))))))...)))))	chr1:173834950-173835198(-)$1	1	69	107	10.4029
((((..((...((((....))))....))....))).)	chr2:27606290-27606569(-)$1	1	43	81	11.1512
((..(.((((((((......))))).))))..)))).)	chr17:19091330-19091536(+)$1	1	117	155	14.5254
(((((....((.((......))))...)))))))..))	chr2:54874193-54874494(+)$1	1	229	267	12.9216
((((..((((((((.(((...)))...)))..))))).	chr15:25330616-25330942(+)$1	1	191	229	11.2946
((((((...((......)).))))))))))...)))))	chr9:116930028-116930252(+)$1	1	22	60	13.3646
(((((((((((.((.........))))))))))).))(	chr9:116994001-116994239(+)$1	1	135	173	11.4392
((((..((((..((.........))..))))..)))))	chr14:102549353-102549619(-)$1	1	38	76	10.9517

#PSSM
d : 0.16	g : 0.12	e : 0.10	[ : 0.09	= : 0.09	b : 0.07	c : 0.05	" : 0.05	! : 0.03	i : 0.03	: : 0.03	# : 0.03	$ : 0.03	^ : 0.01	a : 0.01	f : 0.01	
d : 0.18	g : 0.14	= : 0.10	b : 0.10	c : 0.10	e : 0.09	! : 0.07	i : 0.03	# : 0.03	" : 0.03	[ : 0.01	^ : 0.01	$ : 0.01	f : 0.01	
= : 0.14	g : 0.14	! : 0.14	d : 0.10	c : 0.09	e : 0.09	b : 0.05	i : 0.05	# : 0.05	" : 0.03	^ : 0.01	$ : 0.01	[ : 0.01	f : 0.01	
= : 0.14	g : 0.14	! : 0.14	d : 0.09	[ : 0.07	# : 0.07	c : 0.07	e : 0.07	a : 0.05	" : 0.03	i : 0.03	^ : 0.01	b : 0.01	$ : 0.01	
= : 0.16	! : 0.16	g : 0.12	a : 0.12	d : 0.10	e : 0.07	# : 0.05	" : 0.05	i : 0.05	^ : 0.01	[ : 0.01	c : 0.01	b : 0.01	
= : 0.20	! : 0.14	[ : 0.10	d : 0.10	g : 0.09	c : 0.07	# : 0.07	e : 0.07	" : 0.05	i : 0.05	^ : 0.01	
= : 0.20	d : 0.20	c : 0.12	g : 0.07	e : 0.07	# : 0.07	" : 0.05	i : 0.05	[ : 0.03	! : 0.03	b : 0.03	^ : 0.01	$ : 0.01	
= : 0.18	d : 0.18	c : 0.14	g : 0.09	e : 0.09	# : 0.09	b : 0.05	i : 0.05	" : 0.03	a : 0.01	^ : 0.01	f : 0.01	$ : 0.01	
= : 0.18	d : 0.14	# : 0.12	c : 0.09	e : 0.07	" : 0.07	! : 0.05	g : 0.05	i : 0.05	b : 0.03	f : 0.03	^ : 0.01	[ : 0.01	$ : 0.01	a : 0.01	
= : 0.16	e : 0.12	d : 0.12	# : 0.10	! : 0.09	b : 0.05	" : 0.05	g : 0.05	i : 0.05	[ : 0.03	f : 0.03	c : 0.03	^ : 0.01	a : 0.01	$ : 0.01	
e : 0.16	= : 0.14	[ : 0.12	# : 0.09	d : 0.07	" : 0.07	f : 0.05	! : 0.05	g : 0.05	i : 0.05	b : 0.03	^ : 0.01	s : 0.01	$ : 0.01	c : 0.01	
c : 0.27	= : 0.14	e : 0.12	d : 0.10	# : 0.05	f : 0.05	[ : 0.05	" : 0.03	g : 0.03	i : 0.03	^ : 0.01	s : 0.01	o : 0.01	! : 0.01	
c : 0.27	b : 0.12	= : 0.10	d : 0.10	e : 0.10	f : 0.05	g : 0.03	[ : 0.03	q : 0.01	! : 0.01	^ : 0.01	s : 0.01	" : 0.01	r : 0.01	i : 0.01	o : 0.01	
c : 0.29	b : 0.16	d : 0.12	e : 0.10	= : 0.09	[ : 0.03	f : 0.03	q : 0.01	! : 0.01	^ : 0.01	s : 0.01	g : 0.01	r : 0.01	v : 0.01	o : 0.01	
o : 0.43	r : 0.09	c : 0.07	d : 0.07	= : 0.05	v : 0.05	b : 0.03	e : 0.03	q : 0.01	^ : 0.01	s : 0.01	p : 0.01	w : 0.01	f : 0.01	a : 0.01	[ : 0.01	
o : 0.49	r : 0.09	n : 0.07	c : 0.07	v : 0.05	d : 0.03	= : 0.03	l : 0.01	q : 0.01	^ : 0.01	s : 0.01	p : 0.01	w : 0.01	f : 0.01	m : 0.01	
o : 0.50	r : 0.09	n : 0.07	c : 0.05	v : 0.05	m : 0.05	l : 0.03	d : 0.03	q : 0.01	^ : 0.01	s : 0.01	p : 0.01	w : 0.01	
o : 0.49	l : 0.10	r : 0.09	n : 0.07	v : 0.05	m : 0.05	q : 0.01	^ : 0.01	s : 0.01	p : 0.01	w : 0.01	c : 0.01	b : 0.01	
o : 0.49	l : 0.10	r : 0.09	n : 0.07	v : 0.05	m : 0.05	b : 0.03	q : 0.01	^ : 0.01	s : 0.01	p : 0.01	w : 0.01	
o : 0.49	l : 0.09	r : 0.09	n : 0.07	v : 0.05	m : 0.03	b : 0.01	q : 0.01	^ : 0.01	s : 0.01	p : 0.01	w : 0.01	= : 0.01	d : 0.01	] : 0.01	
c : 0.23	= : 0.14	d : 0.10	b : 0.09	r : 0.09	e : 0.07	o : 0.07	v : 0.05	] : 0.01	p : 0.01	g : 0.01	w : 0.01	f : 0.01	a : 0.01	l : 0.01	
c : 0.27	= : 0.16	d : 0.12	e : 0.10	b : 0.09	r : 0.07	v : 0.05	g : 0.01	w : 0.01	i : 0.01	o : 0.01	f : 0.01	] : 0.01	
c : 0.29	= : 0.16	d : 0.12	e : 0.10	r : 0.07	v : 0.05	2 : 0.03	g : 0.03	f : 0.03	] : 0.01	w : 0.01	i : 0.01	b : 0.01	
= : 0.18	d : 0.18	2 : 0.10	e : 0.10	c : 0.07	] : 0.05	v : 0.05	g : 0.05	b : 0.05	f : 0.03	4 : 0.03	w : 0.01	i : 0.01	3 : 0.01	
= : 0.18	d : 0.12	e : 0.10	3 : 0.09	2 : 0.07	c : 0.07	b : 0.05	] : 0.05	f : 0.05	v : 0.05	g : 0.05	4 : 0.03	w : 0.01	i : 0.01	
= : 0.23	d : 0.12	e : 0.10	3 : 0.09	] : 0.09	c : 0.05	f : 0.05	v : 0.05	g : 0.05	i : 0.03	4 : 0.03	b : 0.01	w : 0.01	2 : 0.01	
= : 0.23	d : 0.18	c : 0.10	e : 0.09	3 : 0.07	g : 0.05	i : 0.05	] : 0.03	f : 0.03	v : 0.03	2 : 0.03	4 : 0.03	w : 0.01	
= : 0.23	c : 0.16	d : 0.12	e : 0.10	2 : 0.10	g : 0.07	i : 0.05	f : 0.03	b : 0.03	] : 0.01	a : 0.01	w : 0.01	
= : 0.23	c : 0.20	e : 0.10	2 : 0.09	d : 0.09	g : 0.07	i : 0.05	] : 0.03	b : 0.03	4 : 0.03	a : 0.01	f : 0.01	
= : 0.23	a : 0.14	c : 0.12	e : 0.12	i : 0.07	d : 0.07	4 : 0.07	g : 0.05	b : 0.05	f : 0.01	] : 0.01	
2 : 0.21	3 : 0.18	= : 0.12	4 : 0.10	] : 0.05	i : 0.05	b : 0.05	e : 0.05	g : 0.03	c : 0.03	7 : 0.01	> : 0.01	a : 0.01	d : 0.01	
2 : 0.29	3 : 0.18	= : 0.10	4 : 0.10	g : 0.09	i : 0.05	b : 0.03	] : 0.03	e : 0.03	7 : 0.01	> : 0.01	6 : 0.01	
3 : 0.18	g : 0.12	e : 0.09	d : 0.09	= : 0.09	2 : 0.07	b : 0.07	4 : 0.07	i : 0.05	a : 0.05	] : 0.03	7 : 0.01	> : 0.01	6 : 0.01	
d : 0.20	g : 0.16	e : 0.12	b : 0.09	c : 0.07	= : 0.07	i : 0.05	4 : 0.05	] : 0.03	2 : 0.03	7 : 0.01	> : 0.01	: : 0.01	6 : 0.01	f : 0.01	
d : 0.25	g : 0.12	e : 0.10	c : 0.07	2 : 0.07	i : 0.07	b : 0.05	= : 0.05	] : 0.05	4 : 0.03	7 : 0.01	> : 0.01	: : 0.01	6 : 0.01	f : 0.01	
d : 0.27	e : 0.14	g : 0.12	c : 0.09	i : 0.07	f : 0.05	4 : 0.05	2 : 0.03	h : 0.01	7 : 0.01	> : 0.01	= : 0.01	6 : 0.01	] : 0.01	F : 0.01	b : 0.01	
e : 0.18	d : 0.18	g : 0.12	] : 0.09	i : 0.07	f : 0.05	4 : 0.05	: : 0.03	F : 0.03	c : 0.03	h : 0.01	7 : 0.01	> : 0.01	= : 0.01	6 : 0.01	H : 0.01	b : 0.01	
g : 0.16	e : 0.14	i : 0.09	: : 0.09	d : 0.07	b : 0.05	f : 0.05	F : 0.05	c : 0.05	3 : 0.03	] : 0.03	2 : 0.03	4 : 0.03	h : 0.01	> : 0.01	0 : 0.01	H : 0.01	

#score	699.3846138454018
#seq	55
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_UTR_m1_run1.txt

#BEAR
[a####bb[a!!bb!!cccooooooccc22bb22a]bb2	chr17:55333775-55334022(+)$1	247	98	137	12.5151
ccffffff!!iiiiiiiiinnnnniiiiiiiii333fff	chr9:15463405-15463719(+)$1	314	100	139	14.6046
::eeeee[dddd"""cccooooooccc333dddd22eee	chr16:30958910-30959176(+)$1	266	133	172	11.8659
e!!ccc!!dddd!!ccc[annnnna]ccc22dddd22cc	chr19:40737897-40738141(-)$1	244	27	66	14.8884
fffff[a!!affffff!!annnnna22ffffff]a22af	chr7:158459743-158460084(-)$1	341	96	135	12.3316
eeeeeccc[ccc"""bb[aooooooa]bb22ccc]ccc]	chr2:191513919-191514180(+)$1	261	114	153	13.1627
E:==========%%%%%%ccclllccc4444========	chr11:2160118-2160342(-)$1	224	85	124	13.2833
g[dddd!!ccc[ccc[a[ammmmaa]ccc]cccdddd22	chr2:242255421-242255683(+)$1	262	166	205	11.3505
ggggg[dddd"""bb[cccnnnnnccc]bbddddggggg	chr16:28835296-28835580(+)$1	284	30	69	14.6104
===========%%%%%%cccmmmmccc4444========	chr20:33872280-33872526(-)$1	246	36	75	13.6878
!!ccc[a!!ggggggg[a[ammmma]a]ggggggg22a]	chr12:49351004-49351335(-)$1	331	27	66	13.2336
####ccc[a[dddd[ddddnnnnndddd22dddd333a]	chr12:16500588-16500885(+)$1	297	9	48	13.3288
eeee[a[a!!eeeee[cccnnnnnccceeeee22a]a]e	chr16:1749168-1749423(+)$1	255	58	97	13.8835
ddd[a===========!!annnnna22===========]	chr13:113977727-113978029(+)$1	302	135	174	17.7714
ggggggg"""ccc[bb!!bblllbb]bb]ccc333gggg	chr9:131102838-131103147(+)$1	309	119	158	12.0919
e[ccc[iiiiiiiii[ccclllccc22iiiiiiiiiccc	chr7:5085643-5085917(+)$1	274	11	50	14.1968
e[ccc!!dddd"""a[a[bbnnnnnbb]a]adddd22cc	chr16:30537765-30538051(-)$1	286	195	234	13.1638
ggggggg####a!!eeeeellleeeee22a333gggggg	chr17:41621376-41621640(-)$1	264	131	170	12.5012
:a[bb[aa[dddd"""cccnnnnnccc22dddd]a]a]b	chr22:41487711-41487977(+)$1	266	141	180	14.2600
fffff"""ccc[ccc[ccclllccc]ccc22ccc333ff	chr1:36787651-36787893(+)$1	242	94	133	12.7611
cc]ddddiiiiiiiiicccnnnnnccc22iiiiiiiii:	chr12:19592478-19592777(+)$1	299	222	261	15.4224
E:==========%%%%%%ccclllccc4444========	chr11:2160102-2160311(-)$1	209	54	93	13.2833
E:==========%%%%%%ccclllccc4444========	chr11:2160091-2160302(-)$1	211	45	84	13.2833
d####iiiiiiiii[cccooooooccc]iiiiiiiii22	chr19:44111530-44111822(-)$1	292	15	54	15.6960
!!==========%%%%%%ccclllccc4444========	chr11:2160170-2160385(-)$1	215	128	167	14.9575
E:==========%%%%%%ccclllccc4444========	chr11:2160075-2160280(-)$1	205	23	62	13.2833
BBdddd[bbccc####cccnnnnnccc22ccc]bb]ddd	chr17:38375794-38376185(+)$1	391	99	138	13.1326
hhhhhhhhiiiiiiiiibbnnnnnbb333iiiiiiiii]	chr17:73997213-73997526(+)$1	313	226	265	15.2294
BB::==========!!bboooooobb4444=========	chr3:33481582-33481868(-)$1	286	99	138	13.4053
###bb"""ggggggg[a[annnnna]a]ggggggg22bb	chr12:7363449-7363767(+)$1	318	15	54	15.0967
ggggggccc[bb[eeeeeooooooeeeee]bb]cccggg	chr12:123998039-123998311(-)$1	272	142	181	11.4539
:ccc[ggggggg[ddddbbnnnnnbb]dddd22gggggg	chr7:32931279-32931538(-)$1	259	171	210	12.5038
:dddd!!iiiiiiiii!!aooooooa22iiiiiiiiidd	chr11:47488499-47488778(-)$1	279	238	277	13.9983
dddd[bb[===========nnnnn===========]bbd	chr9:38620254-38620508(-)$1	254	55	94	15.6604
eeeehhhhhhhh[bb[cccnnnnnccc]bb]hhhhhhhh	chr6:32796291-32796567(-)$1	276	170	209	13.2426
"""ccc[a[bb[ccc!!cccooooooccc]ccc]bb]a]	chr19:1273237-1273535(+)$1	298	80	119	12.7912
=====ccc!!ccc[eeeeennnnneeeee]cccccc]==	chr3:48470761-48471022(-)$1	261	76	115	14.4557
:eeeee==========cccnnnnnccc]==========]	chr19:49464890-49465102(+)$1	212	124	163	17.5461
cc[iiiiiiiii[bb[ddddlllddddbb]iiiiiiiii	chr4:78078294-78078557(+)$1	263	129	168	13.5892
===========!!ffffffnnnnnffffff333======	chr5:126172493-126172772(+)$1	279	57	96	15.9430
!!bb!!a!!ddddbb[cccnnnnnccc]bb]dddd22a2	chr14:64971270-64971497(+)$1	227	41	80	14.2022
e[bb"""hhhhhhhhcccooooooccc4444hhhhhhhh	chr17:7835632-7835899(+)$1	267	172	211	12.3078
Fdddd[ccc[bb[bb[cccnnnnnccc]bb]bb]ccc22	chr7:111202339-111202601(-)$1	262	218	257	13.8440
DDDiiiiiiiii!!eeeeennnnneeeee4444iiiiii	chr1:155242930-155243315(-)$1	385	170	209	13.6009
e[ccc!!eeeee$$$$$bbnnnnnbb4444eeeee]ccc	chr1:201123085-201123346(-)$1	261	116	155	14.2826
iiiiiiii[ccc!!a[a[annnnna]a]a]ccciiiiii	chr2:64751449-64751707(+)$1	258	7	46	18.3061
eccc[ccc[ccc!!eeeeennnnneeeee22ccc]cccc	chr1:36789206-36789458(+)$1	252	119	158	14.1742
ciiiiiiiii!!a!!ddddnnnnndddd22a]iiiiiii	chr19:1104370-1104630(+)$1	260	183	222	16.3750
ffff####bbeeeee[cccnnnnnccc]eeeee333bb2	chr12:123465236-123465492(+)$1	256	11	50	13.2543
iiiiiii####cccccc[bbmmmmbbccc]ccciiiiii	chr17:55333892-55334153(+)$1	261	117	156	12.6445
eecccggggggg"""cccooooooccc666666gggggg	chr5:176980956-176981271(-)$1	315	134	173	13.1650
dddd:iiiiiiiii[bbbboooooobb]bb]iiiiiiii	chr18:55711676-55711959(+)$1	283	202	241	12.6418
:eeeee==========cccnnnnnccc]==========]	chr19:49464902-49465147(+)$1	245	112	151	17.5461
ggggggg"""ccc"""cccnnnnncccccc22ggggggg	chr12:131356941-131357208(+)$1	267	44	83	16.8874
ff"""ggggggg"""eeeeemmmmeeeee333ggggggg	chr12:6797922-6798182(-)$1	260	209	248	12.3642
[ccc[==========!!bbmmmmbb22==========]c	chr2:102508230-102508536(+)$1	306	116	155	13.8225
aggggggg!!bb"""ddddnnnnndddd333bb333ggg	chr1:87380428-87380714(+)$1	286	235	274	16.0231
addddggggggg[ccc[cccmmmmccc333ccc]ggggg	chr17:41622969-41623252(+)$1	283	156	195	13.7691
ggg]ffffffccc[a[cccnnnnnccc]a]ccc:eeeee	chr17:16284519-16284764(+)$1	245	147	186	13.3711
ee[ccc[a[ccc[bbddddoooooodddd22bb]ccc]a	chr3:160283086-160283345(-)$1	259	151	190	12.0549

#otherMatches

#Seq PSSM
ACGGGGGGGUGUGCGAGGCAGCGGGGCUGAGCUAAGCCG	chr17:55333775-55334022(+)$1	247	98	137	12.5151
ugggguggggugggguggggGUUAUCUAUCUCAAAAUUA	chr9:15463405-15463719(+)$1	314	100	139	14.6046
GAUCCAGGUGUCAGAGGUAGGGGAACCAGGGGCAAGCUG	chr16:30958910-30959176(+)$1	266	133	172	11.8659
CAGGGUGAGGGCAGCUGGGGUGUGUGCAGGAGCUCAGGC	chr19:40737897-40738141(-)$1	244	27	66	14.8884
GGGACACAGGGUCUCUGAGGGAGGCGGAGGGACACAGGG	chr7:158459743-158460084(-)$1	341	96	135	12.3316
GGCUGAGCAGUCCUCGGGGAGAGCGCGCCAAGACCGCUG	chr2:191513919-191514180(+)$1	261	114	153	13.1627
UCGGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGC	chr11:2160118-2160342(-)$1	224	85	124	13.2833
CGGUCCUAGUGCCGGCGACAGUGGCUCCGACACGGGCAG	chr2:242255421-242255683(+)$1	262	166	205	11.3505
GAGGGAGGGACUUGGGAGCGGGUUGCUGCCUCCCCCUUC	chr16:28835296-28835580(+)$1	284	30	69	14.6104
GGUCCUGGGUCGGGAGGGGUGGGGGCCAGAGGAUUCAGG	chr20:33872280-33872526(-)$1	246	36	75	13.6878
AGGUGGGAAGUAUCCCGGGCUGGGGGUGGGGGUACGCCG	chr12:49351004-49351335(-)$1	331	27	66	13.2336
ACCCGGCGGCGGGACAGGCUUGCUGCUUCCUCCUCCUCG	chr12:16500588-16500885(+)$1	297	9	48	13.3288
UCAUGUGUAGUCCAGGUUUGAGAGGAACUGGAAGGGGGG	chr16:1749168-1749423(+)$1	255	58	97	13.8835
GGUGGUCUUGGUGCCAGACGUAGGGAAUGGUGUUGGGAG	chr13:113977727-113978029(+)$1	302	135	174	17.7714
ggcuggcggggcggccgggccaugcagggcgCAGAGCCG	chr9:131102838-131103147(+)$1	309	119	158	12.0919
GGUGGAGGCUUGAGCGGGGACCCCCGAGCUUGAGCCCCG	chr7:5085643-5085917(+)$1	274	11	50	14.1968
CGCCGAGUCCCCUGGGCGGCGCUGAGCGGGCGGGAGGCG	chr16:30537765-30538051(-)$1	286	195	234	13.1638
GGUGGUUUAGACAGUCUCUGAGAGGGAAGGGUUAACUAC	chr17:41621376-41621640(-)$1	264	131	170	12.5012
AGGACGCCGGGCUGAGUGCUAACUGCGGGAGCCAGAGAG	chr22:41487711-41487977(+)$1	266	141	180	14.2600
CUGGGGAAGGGAGCCUCUCAGGGGGUGGCGGUCCACGCC	chr1:36787651-36787893(+)$1	242	94	133	12.7611
GCAGCCCGGGUUCGGCGGCGCGGGGCCGGGCUGAGCCCC	chr12:19592478-19592777(+)$1	299	222	261	15.4224
UCGGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGC	chr11:2160102-2160311(-)$1	209	54	93	13.2833
UCGGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGC	chr11:2160091-2160302(-)$1	211	45	84	13.2833
CACGGGCACUUCAUGCUGCAUGCCCGGGGUGAGGUGUAG	chr19:44111530-44111822(-)$1	292	15	54	15.6960
UCGGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGC	chr11:2160170-2160385(-)$1	215	128	167	14.9575
UCGGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGC	chr11:2160075-2160280(-)$1	205	23	62	13.2833
CGGGUGGGGCCUGAGGGGCGGGGGGCCGGGGGACUGUAU	chr17:38375794-38376185(+)$1	391	99	138	13.1326
AACGGGAGCGCUGGGCGUGGGGUGCAAAUUGCCCGGUGC	chr17:73997213-73997526(+)$1	313	226	265	15.2294
GCUUGGGGGCGGGUGACGGGCGGGCGGAGGGCUUGCCCC	chr3:33481582-33481868(-)$1	286	99	138	13.4053
GGGCCAAUUGCUACAGAGUGUCUGGGUGUGUGGCAUAGG	chr12:7363449-7363767(+)$1	318	15	54	15.0967
UCUGUUGUGAGCACUUCACAUCGAUGAAGCGUGCACAGG	chr12:123998039-123998311(-)$1	272	142	181	11.4539
ACGCUGCUUUCCGCGCUGGACGGACCAAGCGAGGGAGGG	chr7:32931279-32931538(-)$1	259	171	210	12.5038
AGGCCGCUCUGCCUGGGGGAAAGGGCAGCCAGGCAGAGG	chr11:47488499-47488778(-)$1	279	238	277	13.9983
CUACAUUGCGGGUUUGGGGGUGGAUCUUGGAUUUGGGGG	chr9:38620254-38620508(-)$1	254	55	94	15.6604
AGGAGUAUUUUGUGGCAUAAUACAUAUAUUUUAAAAUAU	chr6:32796291-32796567(-)$1	276	170	209	13.2426
AGACUGGCGCUGGUCAGGGUAGGGGAGCCAGGCGGGGGA	chr19:1273237-1273535(+)$1	298	80	119	12.7912
CUGCUUCCGGCCUggcccgggcggcgggcggggggAGGG	chr3:48470761-48471022(-)$1	261	76	115	14.4557
AGAGUGGUCUUGAGGGGGUAAUAAACCUCCUUCGGGACA	chr19:49464890-49465102(+)$1	212	124	163	17.5461
CUGGUCUUCCGCGGCCGGCGUUGCGCCGCGGCGGAGGGU	chr4:78078294-78078557(+)$1	263	129	168	13.5892
UUCUUCUCUUAGAUUCUUAAUUCAUGAGGAGGGUGGGGG	chr5:126172493-126172772(+)$1	279	57	96	15.9430
AACAGGCGACCGCGGGUGCCCCUAGCAGCCAGCGGCAGA	chr14:64971270-64971497(+)$1	227	41	80	14.2022
CGCUAUGGCUUUCUUGCCAGGAGGGGUCGAAGGGAAAGU	chr17:7835632-7835899(+)$1	267	172	211	12.3078
ggcggggcgggcgUUGCCGGGAGGCGGAGGGGUGCGCGG	chr7:111202339-111202601(-)$1	262	218	257	13.8440
CGGAGCCCGGGAACGGGGCGGGAGGUCCCAGGGUCCCGG	chr1:155242930-155243315(-)$1	385	170	209	13.6009
UUGGCGACCAGGUUUAGCAGGCCUUGGAAUCCUGGAGCC	chr1:201123085-201123346(-)$1	261	116	155	14.2826
CCCCCGCUGCAUGAUGGGAGAGUGUGUGGAGUGGGCGGG	chr2:64751449-64751707(+)$1	258	7	46	18.3061
cgggaggagggAGAGCCCGGCCCGCGGGCCGUCCGUCCC	chr1:36789206-36789458(+)$1	252	119	158	14.1742
UGGGGGCGCGGAGGGCUGGAAAUCCCGGAUCAcgcgccc	chr19:1104370-1104630(+)$1	260	183	222	16.3750
UCGAGAAGGCGCGGGGCGGGCUGUCCGGCCCGCAGGGCG	chr12:123465236-123465492(+)$1	256	11	50	13.2543
agcggagAUCUCGGGGCUCGGAGCCGGCCGCCGCUCCGC	chr17:55333892-55334153(+)$1	261	117	156	12.6445
CCUUCCCCCGGGUCCGGCGCCGAAGCUUUCUCCCCCGGG	chr5:176980956-176981271(-)$1	315	134	173	13.1650
GGGGCGCCGGCUCCAUGGCGACCGGGCUCGGGGAGCCGG	chr18:55711676-55711959(+)$1	283	202	241	12.6418
AGAGUGGUCUUGAGGGGGUAAUAAACCUCCUUCGGGACA	chr19:49464902-49465147(+)$1	245	112	151	17.5461
cccgcucccAGGCCUGGCCGCCAUGGCGCCGCGGGCGGG	chr12:131356941-131357208(+)$1	267	44	83	16.8874
AGGAACUGUCUCAGGGGAGCGAAGGUUUUGAGGGGACAG	chr12:6797922-6798182(-)$1	260	209	248	12.3642
AGGGGUCCCAUUUUGUUUCUUUGGAUUUGGGGUGGGGGU	chr2:102508230-102508536(+)$1	306	116	155	13.8225
CCGGGGUCCCGCUCCCCGCCCCCCGCGGUAUGUCUUGAU	chr1:87380428-87380714(+)$1	286	235	274	16.0231
CGGCGAAACUUCUCCGACUCACUGGGGCGAUGGCGAGGU	chr17:41622969-41623252(+)$1	283	156	195	13.7691
CCUGAGGGGGGCGAGGGCGGUUGGCGCGCGCGCGCGUUG	chr17:16284519-16284764(+)$1	245	147	186	13.3711
AAGCGGCGGCGCGGCGGGCACAGCAGCUCAGGCGGCGGC	chr3:160283086-160283345(-)$1	259	151	190	12.0549

#DB
.(....((.(..((..(((......)))..))..).)).	chr17:55333775-55334022(+)$1	1	98	137	12.5151
))((((((..(((((((((.....)))))))))...)))	chr9:15463405-15463719(+)$1	1	100	139	14.6046
..(((((.((((...(((......)))...))))..)))	chr16:30958910-30959176(+)$1	1	133	172	11.8659
(..(((..((((..(((.(.....).)))..))))..))	chr19:40737897-40738141(-)$1	1	27	66	14.8884
(((((.(..(((((((..(.....)..)))))).)..))	chr7:158459743-158460084(-)$1	1	96	135	12.3316
((((((((.(((...((.(......).))..))).))).	chr2:191513919-191514180(+)$1	1	114	153	13.1627
(.((((((((((......(((...)))....))))))))	chr11:2160118-2160342(-)$1	1	85	124	13.2833
(.((((..(((.(((.(.(....)).))).)))))))..	chr2:242255421-242255683(+)$1	1	166	205	11.3505
(((((.((((...((.(((.....))).)))))))))))	chr16:28835296-28835580(+)$1	1	30	69	14.6104
(((((((((((......(((....)))....))))))))	chr20:33872280-33872526(-)$1	1	36	75	13.6878
..(((.(..(((((((.(.(....).).)))))))..).	chr12:49351004-49351335(-)$1	1	27	66	13.2336
....(((.(.((((.((((.....))))..))))...).	chr12:16500588-16500885(+)$1	1	9	48	13.3288
((((.(.(..(((((.(((.....))))))))..).).)	chr16:1749168-1749423(+)$1	1	58	97	13.8835
(((.((((((((((((..(.....)..))))))))))).	chr13:113977727-113978029(+)$1	1	135	174	17.7714
(((((((...(((.((..((...)).)).)))...))))	chr9:131102838-131103147(+)$1	1	119	158	12.0919
(.(((.(((((((((.(((...)))..))))))))))))	chr7:5085643-5085917(+)$1	1	11	50	14.1968
(.(((..((((...(.(.((.....)).).)))))..))	chr16:30537765-30538051(-)$1	1	195	234	13.1638
(((((((....(..(((((...)))))..)...))))))	chr17:41621376-41621640(-)$1	1	131	170	12.5012
.(.((.((.((((...(((.....)))..)))).).).)	chr22:41487711-41487977(+)$1	1	141	180	14.2600
(((((...(((.(((.(((...))).)))..)))...))	chr1:36787651-36787893(+)$1	1	94	133	12.7611
)).))))((((((((((((.....)))..))))))))).	chr12:19592478-19592777(+)$1	1	222	261	15.4224
(.((((((((((......(((...)))....))))))))	chr11:2160102-2160311(-)$1	1	54	93	13.2833
(.((((((((((......(((...)))....))))))))	chr11:2160091-2160302(-)$1	1	45	84	13.2833
(....(((((((((.(((......))).)))))))))..	chr19:44111530-44111822(-)$1	1	15	54	15.6960
..((((((((((......(((...)))....))))))))	chr11:2160170-2160385(-)$1	1	128	167	14.9575
(.((((((((((......(((...)))....))))))))	chr11:2160075-2160280(-)$1	1	23	62	13.2833
((((((.(((((....(((.....)))..))).)).)))	chr17:38375794-38376185(+)$1	1	99	138	13.1326
(((((((((((((((((((.....))...))))))))).	chr17:73997213-73997526(+)$1	1	226	265	15.2294
))..((((((((((..((......))....)))))))))	chr3:33481582-33481868(-)$1	1	99	138	13.4053
...((...(((((((.(.(.....).).)))))))..))	chr12:7363449-7363767(+)$1	1	15	54	15.0967
))))))(((.((.(((((......))))).)).)))(((	chr12:123998039-123998311(-)$1	1	142	181	11.4539
.(((.(((((((.((((((.....)).))))..))))))	chr7:32931279-32931538(-)$1	1	171	210	12.5038
.((((..(((((((((..(......)..)))))))))))	chr11:47488499-47488778(-)$1	1	238	277	13.9983
((((.((.(((((((((((.....))))))))))).)))	chr9:38620254-38620508(-)$1	1	55	94	15.6604
((((((((((((.((.(((.....))).)).))))))))	chr6:32796291-32796567(-)$1	1	170	209	13.2426
...(((.(.((.(((..(((......))).))).)).).	chr19:1273237-1273535(+)$1	1	80	119	12.7912
((((((((..(((.(((((.....))))).)))))).))	chr3:48470761-48471022(-)$1	1	76	115	14.4557
.((((((((((((((((((.....))).)))))))))).	chr19:49464890-49465102(+)$1	1	124	163	17.5461
((.(((((((((.((.((((...)))))).)))))))))	chr4:78078294-78078557(+)$1	1	129	168	13.5892
(((((((((((..((((((.....))))))...))))))	chr5:126172493-126172772(+)$1	1	57	96	15.9430
..((..(..((((((.(((.....))).)).))))..).	chr14:64971270-64971497(+)$1	1	41	80	14.2022
(.((...(((((((((((......)))....))))))))	chr17:7835632-7835899(+)$1	1	172	211	12.3078
)((((.(((.((.((.(((.....))).)).)).)))..	chr7:111202339-111202601(-)$1	1	218	257	13.8440
((((((((((((..(((((.....)))))....))))))	chr1:155242930-155243315(-)$1	1	170	209	13.6009
(.(((..(((((.....((.....))....))))).)))	chr1:201123085-201123346(-)$1	1	116	155	14.2826
((((((((.(((..(.(.(.....).).).)))))))))	chr2:64751449-64751707(+)$1	1	7	46	18.3061
)(((.(((.(((..(((((.....)))))..))).))))	chr1:36789206-36789458(+)$1	1	119	158	14.1742
)(((((((((..(..((((.....))))..).)))))))	chr19:1104370-1104630(+)$1	1	183	222	16.3750
((((....(((((((.(((.....))).)))))...)).	chr12:123465236-123465492(+)$1	1	11	50	13.2543
(((((((....((((((.((....))))).)))))))))	chr17:55333892-55334153(+)$1	1	117	156	12.6445
))((((((((((...(((......)))......))))))	chr5:176980956-176981271(-)$1	1	134	173	13.1650
)))).(((((((((.((((......)).)).))))))))	chr18:55711676-55711959(+)$1	1	202	241	12.6418
.((((((((((((((((((.....))).)))))))))).	chr19:49464902-49465147(+)$1	1	112	151	17.5461
(((((((...(((...(((.....))))))..)))))))	chr12:131356941-131357208(+)$1	1	44	83	16.8874
((...(((((((...(((((....)))))...)))))))	chr12:6797922-6798182(-)$1	1	209	248	12.3642
.(((.((((((((((..((....))..)))))))))).)	chr2:102508230-102508536(+)$1	1	116	155	13.8225
((((((((..((...((((.....))))...))...)))	chr1:87380428-87380714(+)$1	1	235	274	16.0231
((((((((((((.(((.(((....)))...))).)))))	chr17:41622969-41623252(+)$1	1	156	195	13.7691
))).))))))(((.(.(((.....))).).))).(((((	chr17:16284519-16284764(+)$1	1	147	186	13.3711
((.(((.(.(((.((((((......))))..)).))).)	chr3:160283086-160283345(-)$1	1	151	190	12.0549

#PSSM
e : 0.18	g : 0.11	: : 0.09	c : 0.06	f : 0.06	E : 0.06	d : 0.06	= : 0.05	! : 0.05	[ : 0.03	# : 0.03	B : 0.03	i : 0.03	a : 0.03	h : 0.01	" : 0.01	F : 0.01	D : 0.01	
e : 0.11	g : 0.11	c : 0.09	d : 0.09	: : 0.08	[ : 0.08	! : 0.06	f : 0.06	= : 0.05	# : 0.05	i : 0.05	a : 0.03	B : 0.03	h : 0.01	" : 0.01	D : 0.01	
= : 0.13	d : 0.13	c : 0.13	g : 0.11	e : 0.09	# : 0.06	f : 0.06	[ : 0.05	i : 0.05	" : 0.03	b : 0.03	! : 0.01	] : 0.01	h : 0.01	: : 0.01	D : 0.01	
c : 0.18	= : 0.13	d : 0.13	e : 0.09	g : 0.09	i : 0.08	f : 0.06	b : 0.06	# : 0.05	[ : 0.01	h : 0.01	: : 0.01	" : 0.01	] : 0.01	
c : 0.15	= : 0.15	d : 0.09	g : 0.09	[ : 0.08	i : 0.08	f : 0.06	e : 0.06	# : 0.05	b : 0.03	h : 0.03	" : 0.03	a : 0.01	! : 0.01	: : 0.01	
= : 0.16	g : 0.15	c : 0.11	i : 0.11	[ : 0.09	! : 0.06	e : 0.05	d : 0.05	" : 0.05	# : 0.03	f : 0.03	h : 0.03	a : 0.01	b : 0.01	
= : 0.19	g : 0.13	i : 0.13	c : 0.09	! : 0.08	a : 0.06	[ : 0.06	" : 0.05	b : 0.03	f : 0.03	d : 0.03	h : 0.03	e : 0.01	# : 0.01	
= : 0.19	i : 0.15	! : 0.08	c : 0.08	g : 0.08	a : 0.06	" : 0.06	[ : 0.05	# : 0.05	h : 0.05	b : 0.03	f : 0.03	d : 0.03	e : 0.01	
= : 0.21	i : 0.15	[ : 0.11	! : 0.11	g : 0.08	d : 0.06	c : 0.06	" : 0.03	# : 0.03	b : 0.03	h : 0.03	a : 0.01	e : 0.01	f : 0.01	
= : 0.21	i : 0.15	c : 0.11	d : 0.09	g : 0.09	! : 0.06	[ : 0.05	a : 0.03	" : 0.03	# : 0.03	h : 0.03	b : 0.03	e : 0.01	f : 0.01	
= : 0.21	c : 0.18	i : 0.15	d : 0.09	g : 0.09	b : 0.06	e : 0.05	! : 0.03	# : 0.03	h : 0.03	f : 0.01	" : 0.01	
= : 0.18	c : 0.16	i : 0.15	g : 0.09	d : 0.08	! : 0.05	[ : 0.05	e : 0.05	b : 0.05	" : 0.03	h : 0.03	f : 0.01	% : 0.01	a : 0.01	
c : 0.13	i : 0.11	" : 0.11	[ : 0.11	! : 0.09	% : 0.09	= : 0.09	d : 0.05	g : 0.03	e : 0.03	b : 0.01	f : 0.01	# : 0.01	h : 0.01	$ : 0.01	a : 0.01	
" : 0.13	b : 0.11	i : 0.11	! : 0.09	% : 0.09	= : 0.09	c : 0.08	e : 0.05	[ : 0.05	f : 0.03	g : 0.03	d : 0.03	# : 0.01	h : 0.01	$ : 0.01	
" : 0.11	b : 0.11	e : 0.11	c : 0.09	% : 0.09	i : 0.08	= : 0.08	! : 0.05	[ : 0.05	a : 0.05	f : 0.03	g : 0.03	# : 0.01	d : 0.01	h : 0.01	$ : 0.01	
[ : 0.23	c : 0.11	% : 0.09	e : 0.09	d : 0.08	! : 0.06	i : 0.06	= : 0.06	b : 0.05	f : 0.03	" : 0.03	g : 0.01	# : 0.01	$ : 0.01	
c : 0.36	! : 0.09	% : 0.09	d : 0.09	e : 0.09	a : 0.06	b : 0.05	i : 0.03	[ : 0.03	= : 0.01	f : 0.01	$ : 0.01	
c : 0.38	[ : 0.11	e : 0.09	b : 0.09	% : 0.08	d : 0.08	! : 0.06	i : 0.01	a : 0.01	= : 0.01	f : 0.01	
c : 0.39	a : 0.13	b : 0.13	o : 0.09	d : 0.08	e : 0.08	i : 0.01	[ : 0.01	= : 0.01	f : 0.01	
n : 0.49	o : 0.18	c : 0.13	b : 0.05	l : 0.05	m : 0.03	a : 0.01	d : 0.01	e : 0.01	
n : 0.51	o : 0.19	m : 0.11	c : 0.08	l : 0.08	
n : 0.51	o : 0.19	l : 0.16	m : 0.11	
n : 0.51	o : 0.19	l : 0.11	m : 0.11	c : 0.03	e : 0.01	
n : 0.51	o : 0.19	l : 0.08	m : 0.08	b : 0.03	c : 0.03	a : 0.01	e : 0.01	d : 0.01	
c : 0.43	a : 0.11	b : 0.11	o : 0.09	e : 0.09	d : 0.06	i : 0.01	n : 0.01	= : 0.01	f : 0.01	
c : 0.41	] : 0.11	b : 0.11	e : 0.09	d : 0.08	2 : 0.06	a : 0.03	i : 0.01	= : 0.01	o : 0.01	f : 0.01	
c : 0.49	e : 0.09	2 : 0.08	d : 0.08	a : 0.05	b : 0.05	] : 0.03	4 : 0.03	i : 0.01	3 : 0.01	= : 0.01	f : 0.01	
] : 0.23	4 : 0.15	c : 0.11	e : 0.09	d : 0.08	2 : 0.08	3 : 0.05	b : 0.05	= : 0.05	i : 0.03	f : 0.03	6 : 0.01	
4 : 0.15	2 : 0.11	b : 0.11	e : 0.11	c : 0.09	= : 0.08	i : 0.06	3 : 0.06	a : 0.05	f : 0.03	g : 0.03	d : 0.03	] : 0.01	6 : 0.01	
4 : 0.16	] : 0.15	2 : 0.13	i : 0.09	b : 0.08	= : 0.08	3 : 0.06	c : 0.05	f : 0.03	g : 0.03	e : 0.03	d : 0.03	a : 0.01	6 : 0.01	
c : 0.15	4 : 0.13	i : 0.11	2 : 0.09	= : 0.09	d : 0.08	3 : 0.06	] : 0.06	e : 0.05	b : 0.03	g : 0.03	a : 0.03	f : 0.01	6 : 0.01	
c : 0.19	= : 0.19	i : 0.13	d : 0.11	b : 0.08	e : 0.05	3 : 0.05	g : 0.03	2 : 0.03	h : 0.03	f : 0.01	4 : 0.01	] : 0.01	6 : 0.01	
= : 0.19	c : 0.16	i : 0.15	d : 0.11	g : 0.06	2 : 0.05	3 : 0.05	b : 0.05	] : 0.03	h : 0.03	e : 0.03	f : 0.01	4 : 0.01	6 : 0.01	
= : 0.21	i : 0.18	d : 0.11	g : 0.11	] : 0.09	c : 0.08	3 : 0.06	2 : 0.03	h : 0.03	b : 0.01	e : 0.01	: : 0.01	
= : 0.21	i : 0.18	g : 0.15	3 : 0.09	a : 0.06	d : 0.06	c : 0.06	] : 0.03	b : 0.03	h : 0.03	e : 0.03	2 : 0.01	
= : 0.19	i : 0.18	g : 0.13	2 : 0.11	] : 0.09	c : 0.09	3 : 0.08	h : 0.03	d : 0.01	b : 0.01	e : 0.01	
= : 0.19	g : 0.16	i : 0.16	2 : 0.09	c : 0.09	b : 0.05	e : 0.03	d : 0.03	3 : 0.03	a : 0.03	h : 0.03	] : 0.03	f : 0.01	
= : 0.19	g : 0.16	i : 0.13	c : 0.09	a : 0.08	b : 0.06	] : 0.06	2 : 0.05	f : 0.03	e : 0.03	d : 0.03	h : 0.03	
g : 0.16	= : 0.15	] : 0.13	2 : 0.09	c : 0.09	i : 0.09	f : 0.05	e : 0.05	d : 0.05	b : 0.03	h : 0.03	: : 0.01	a : 0.01	

#score	838.1063326883002
#seq	60
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_UTR_m3_run2.txt

#BEAR
gggggggqqqqqqqqggggggg:	chr10:70706378-70706668(+)$1	290	192	215	14.8856
"""ddddqqqqqqqqdddd333e	chr5:70952690-70952937(+)$1	247	117	140	15.7558
''eeeeeqqqqqqqqeeeee777	chr2:26413885-26414140(-)$1	255	89	112	12.9749
gggggggqqqqqqqqgggggggh	chr5:162880611-162880897(-)$1	286	150	173	15.3650
eeeee[aqqqqqqqqa]eeeee]	chr2:239078958-239079233(-)$1	275	34	57	15.2765
iiiiiiiqqqqqqqqiiiiiiii	chr13:50234786-50235073(-)$1	287	194	217	15.7778
FffffffqqqqqqqqffffffFF	chr15:23003369-23003651(+)$1	282	18	41	12.9508
iiiicccqqqqqqqqccc]iiii	chr10:133781818-133782054(-)$1	236	199	222	15.9099
!dddd[aqqqqqqqqa]dddd22	chr2:105977440-105977709(-)$1	269	221	244	15.0618
gg!!cccqqqqqqqqccc]gggg	chr19:34891084-34891313(+)$1	229	193	216	15.8861
b[ccc[aqqqqqqqqa]cccbb3	chr10:89514150-89514397(-)$1	247	151	174	14.8661
"ffffffqqqqqqqqffffffbb	chr19:50191555-50191799(+)$1	244	172	195	14.2272
ee[ddddqqqqqqqqddddeeee	chr6:36936271-36936499(-)$1	228	161	184	14.7670
gggggggqqqqqqqqgggggggF	chrX:153664505-153664795(+)$1	290	190	213	15.1916
iiiiiiiqqqqqqqqiiiiiiii	chr3:127340818-127341086(+)$1	268	213	236	15.7778
!a[ddddqqqqqqqqdddd]a]b	chr3:25639421-25639727(-)$1	306	101	124	15.1954
""ccc[aqqqqqqqqaccccccd	chr5:132441484-132441725(+)$1	241	127	150	15.6847
a[eeeeeqqqqqqqqeeeee]a]	chr11:126133545-126133786(-)$1	241	19	42	15.5201
hhh[cccqqqqqqqqccc]hhhh	chr17:38612861-38613150(+)$1	289	192	215	14.2211
ddd[cccqqqqqqqqccc]dddd	chr17:79477094-79477305(-)$1	211	82	105	14.9146
gggggggqqqqqqqqgggggggf	chr17:80036166-80036461(-)$1	295	113	136	15.4951
###ddddqqqqqqqqddddccc5	chr17:41166931-41167218(-)$1	287	186	209	14.7626
####cccqqqqqqqqcccbb]dd	chr4:99993379-99993655(-)$1	276	227	250	15.1986
=======qqqqqqqq========	chr1:174979319-174979577(+)$1	258	29	52	16.2338
::eeeeeqqqqqqqqeeeeeeee	chr21:34896406-34896670(-)$1	264	128	151	13.2378
=======qqqqqqqq========	chr6:160103316-160103598(-)$1	282	120	143	16.2338
ee!!cccqqqqqqqqccc]eeee	chr5:68660577-68660839(-)$1	262	96	119	15.4863
iiiiiiiqqqqqqqqiiiiiiii	chr4:108955686-108955942(+)$1	256	11	34	15.7778
e[eeeeeqqqqqqqqeeeee333	chr6:166733598-166733829(-)$1	231	87	110	15.8026
eeeecccqqqqqqqqccc]eeee	chr2:136598239-136598498(-)$1	259	17	40	15.2888
eeeee[aqqqqqqqqa]eeeee3	chr16:31202791-31203007(+)$1	216	102	125	15.3946
dd[ddddqqqqqqqqdddd]ddd	chr11:111933385-111933679(+)$1	294	68	91	14.6289
!!bb[bbqqqqqqqqbb]bb22c	chr10:97365827-97366079(-)$1	252	151	174	13.5326
!ccc[bbqqqqqqqqbb]ccc44	chr2:148692800-148693072(-)$1	272	235	258	14.8261
eeeee[aqqqqqqqqa]eeeee3	chr16:31202775-31202991(+)$1	216	118	141	15.3946
dddd[bbqqqqqqqqbb]ddddH	chr19:46112698-46112950(-)$1	252	185	208	13.1828
dddd!!aqqqqqqqqa22dddd:	chr2:170494001-170494313(+)$1	312	78	101	13.2988
!ffffffqqqqqqqqffffff22	chr12:96394511-96394771(-)$1	260	175	198	14.6164
iiiiiiiqqqqqqqqiiiiiiii	chr14:35786484-35786735(+)$1	251	190	213	15.7778
""eeeeeqqqqqqqqeeeee22e	chr17:37006285-37006543(-)$1	258	231	254	15.4965
""cccbbqqqqqqqqbb]ccc33	chr12:123254438-123254700(+)$1	262	65	88	15.2739
gggggggqqqqqqqqggggggg]	chr15:64448009-64448303(-)$1	294	121	144	15.7343
gggggggqqqqqqqqggggggg]	chr20:2639181-2639431(-)$1	250	22	45	15.7343
dd[ddddqqqqqqqqdddd]ddd	chr14:97347507-97347799(+)$1	292	263	286	14.6289
$$eeeeeqqqqqqqqeeeeeeee	chr11:57510234-57510465(+)$1	231	148	171	15.1162
$bb[cccqqqqqqqqcccbb444	chr18:3255845-3256105(+)$1	260	32	55	14.8820
:ddddbbqqqqqqqqbb]dddde	chr10:62554011-62554256(+)$1	245	71	94	12.9973
bb!!cccqqqqqqqqccc4444b	chr8:144898489-144898760(-)$1	271	26	49	15.0895
=[eeeeeqqqqqqqqeeeee===	chr9:100777891-100778098(+)$1	207	104	127	15.7000
%%eeeeeqqqqqqqqeeeeeddd	chr12:54678485-54678688(+)$1	203	93	116	14.1802
####cccqqqqqqqqccc4444e	chr12:69995004-69995334(+)$1	330	71	94	15.9085
gggggggqqqqqqqqgggggggf	chr18:43669707-43669999(-)$1	292	74	97	15.4951
[ffffffqqqqqqqqffffffbb	chr11:61564464-61564729(+)$1	265	66	89	14.1038
cffffffqqqqqqqqffffff44	chrX:30237805-30238132(+)$1	327	184	207	14.5975
!!eeeeeqqqqqqqqeeeee22c	chr11:75116571-75116813(+)$1	242	101	124	15.5106
#ffffffqqqqqqqqffffff33	chr8:27402194-27402458(+)$1	264	203	226	15.1046
dd[ddddqqqqqqqqdddd]ddd	chr11:130013802-130014054(+)$1	252	217	240	14.6289
dd!!cccqqqqqqqqcccdddd:	chr1:33478632-33478893(-)$1	261	171	194	14.5126
"bb[cccqqqqqqqqccc22bb5	chr3:98298702-98298955(-)$1	253	138	161	13.8158
"""ddddqqqqqqqqdddd]ddd	chr12:51637304-51637606(+)$1	302	124	147	15.3041
###ddddqqqqqqqqdddd333b	chr3:33539833-33540113(-)$1	280	229	252	15.5237

#otherMatches

#Seq PSSM
AAUAAAAAAACCUCCUUUUAUUG	chr10:70706378-70706668(+)$1	290	192	215	14.8856
UACUUUUCUACCUUAAAAAAAUC	chr5:70952690-70952937(+)$1	247	117	140	15.7558
AGUGGUGUCUAGAUUUAUCAGAG	chr2:26413885-26414140(-)$1	255	89	112	12.9749
CAGCAUGAAGUUUUAUAUGCUGC	chr5:162880611-162880897(-)$1	286	150	173	15.3650
UGGUGGUGCGGAUAGGGCACUGA	chr2:239078958-239079233(-)$1	275	34	57	15.2765
AAAAUGUUUAAUUAUACAUUUUA	chr13:50234786-50235073(-)$1	287	194	217	15.7778
CAGUUACCAUUAACUGUAACUAU	chr15:23003369-23003651(+)$1	282	18	41	12.9508
AUCUAUAAUUACACCUAUGGGAU	chr10:133781818-133782054(-)$1	236	199	222	15.9099
CCAAAUGUAAAAAUCCUUUUGAA	chr2:105977440-105977709(-)$1	269	221	244	15.0618
UUUAUGUAGCAGAGGGCAGGAGC	chr19:34891084-34891313(+)$1	229	193	216	15.8861
CAGUUGAAUCCAGCCUGAACGUG	chr10:89514150-89514397(-)$1	247	151	174	14.8661
AAAGGAGGUUUGGGGUUCCUUUC	chr19:50191555-50191799(+)$1	244	172	195	14.2272
GUCAGACCCCACCCCGUCUACCC	chr6:36936271-36936499(-)$1	228	161	184	14.7670
AGAAGUACACGGGUUUAUUUCUG	chrX:153664505-153664795(+)$1	290	190	213	15.1916
GAAGAUGUUUGUAAUCGUUUUCA	chr3:127340818-127341086(+)$1	268	213	236	15.7778
UCUUUUUUACUCAUUGAAAUGUC	chr3:25639421-25639727(-)$1	306	101	124	15.1954
GAGGCACCACAACAAGGCCAGGU	chr5:132441484-132441725(+)$1	241	127	150	15.6847
CCUUCUUCCUGUAUCAAGAAUGU	chr11:126133545-126133786(-)$1	241	19	42	15.5201
CUUUGGUGUUACACAGCCCAAGA	chr17:38612861-38613150(+)$1	289	192	215	14.2211
UCUUUGGCCAGAACACCGUGGGC	chr17:79477094-79477305(-)$1	211	82	105	14.9146
GAUUCAAAUUGCUGCUUGGAUUU	chr17:80036166-80036461(-)$1	295	113	136	15.4951
UUGUACUGGGACCAAAGUAAAAA	chr17:41166931-41167218(-)$1	287	186	209	14.7626
AAUCUCUAUAAUCAAGGACAAGG	chr4:99993379-99993655(-)$1	276	227	250	15.1986
UUCUCCAUUUCCUACUGGAGGAU	chr1:174979319-174979577(+)$1	258	29	52	16.2338
UAGUGUUGUAUUUGAAACAUAGU	chr21:34896406-34896670(-)$1	264	128	151	13.2378
UGUAGUGGUAUAGAGUACUGCAG	chr6:160103316-160103598(-)$1	282	120	143	16.2338
UACUUGGUCUUGAAUUCAUUGUA	chr5:68660577-68660839(-)$1	262	96	119	15.4863
UAAGAAAUAAUUCCCUUUUUUAG	chr4:108955686-108955942(+)$1	256	11	34	15.7778
AUGCAGUUAUUAAAUGCUGUUCU	chr6:166733598-166733829(-)$1	231	87	110	15.8026
GCUCCACAGAGGGAAGUGAGAGC	chr2:136598239-136598498(-)$1	259	17	40	15.2888
UGGUUCCCAUUAAAAGUGACCAU	chr16:31202791-31203007(+)$1	216	102	125	15.3946
AAUAAUCAGACACCAGAUUUUUA	chr11:111933385-111933679(+)$1	294	68	91	14.6289
CAGGAGAUGCUGUGUUCCCCGUG	chr10:97365827-97366079(-)$1	252	151	174	13.5326
UAGGGACUAGACCAUGUGCUUUU	chr2:148692800-148693072(-)$1	272	235	258	14.8261
UGGUUCCCAUUAAAAGUGACCAU	chr16:31202775-31202991(+)$1	216	118	141	15.3946
GGUGGGAAGAGGGAGUCACAUCG	chr19:46112698-46112950(-)$1	252	185	208	13.1828
GAGAGACUUGCUAAUGAAUCUCC	chr2:170494001-170494313(+)$1	312	78	101	13.2988
UCUUUGUAAAUUUUAACAAGGUU	chr12:96394511-96394771(-)$1	260	175	198	14.6164
AAAUAAUUGCAUCCUGUUGUUUU	chr14:35786484-35786735(+)$1	251	190	213	15.7778
CUCCCUGuucacuuccaggguuc	chr17:37006285-37006543(-)$1	258	231	254	15.4965
UUGCUUCUUUGAUGUGAUAGUUU	chr12:123254438-123254700(+)$1	262	65	88	15.2739
GCCCUGUAGUCCGCCACAGGGCU	chr15:64448009-64448303(-)$1	294	121	144	15.7343
UAAAGGGAGCUAGAGCCCUUUAU	chr20:2639181-2639431(-)$1	250	22	45	15.7343
UCCCAAAGCCGUGUGUUUGUGAU	chr14:97347507-97347799(+)$1	292	263	286	14.6289
ACUUCAGUCAUGAUCCUGAAGCC	chr11:57510234-57510465(+)$1	231	148	171	15.1162
CGCAUCCUGAAACAUGGAGCCAA	chr18:3255845-3256105(+)$1	260	32	55	14.8820
UUCAAGUUUCGUAAUGCUUUGAA	chr10:62554011-62554256(+)$1	245	71	94	12.9973
GUGUACGACCAGGAGCGUUUUGA	chr8:144898489-144898760(-)$1	271	26	49	15.0895
UGAGUCAACCGUCUGUGGCUACC	chr9:100777891-100778098(+)$1	207	104	127	15.7000
AUGUAGAUUUUUUUUUUUGCACC	chr12:54678485-54678688(+)$1	203	93	116	14.1802
AAACGUGUCCCUGAUCACCACCC	chr12:69995004-69995334(+)$1	330	71	94	15.9085
UUGUCGUGUUUGGAAAUGAUAAA	chr18:43669707-43669999(-)$1	292	74	97	15.4951
CUUGGGUGGGCAGAAACUCGAAC	chr11:61564464-61564729(+)$1	265	66	89	14.1038
CUUUUGUAAUCCAGGACAAGAAA	chrX:30237805-30238132(+)$1	327	184	207	14.5975
UGUAUUCUGGAGUCUGGAUGUUG	chr11:75116571-75116813(+)$1	242	101	124	15.5106
GAUUGGGAUGCCUUACUCAAUAA	chr8:27402194-27402458(+)$1	264	203	226	15.1046
UGUAUACAGAUGAGGGUGUCCGC	chr11:130013802-130014054(+)$1	252	217	240	14.6289
GACAGGCAAAGAGAAGCUUCCUC	chr1:33478632-33478893(-)$1	261	171	194	14.5126
UCUGCACUUUUGAAUGUGAAAGC	chr3:98298702-98298955(-)$1	253	138	161	13.8158
GUACCAUUGACUGUUAUGGAAGU	chr12:51637304-51637606(+)$1	302	124	147	15.3041
ACAAAGUAAUUUUUAAUUUAAUU	chr3:33539833-33540113(-)$1	280	229	252	15.5237

#DB
(((((((........))))))).	chr10:70706378-70706668(+)$1	1	192	215	14.8856
...((((........))))...)	chr5:70952690-70952937(+)$1	1	117	140	15.7558
..(((((........)))))...	chr2:26413885-26414140(-)$1	1	89	112	12.9749
(((((((........)))))))(	chr5:162880611-162880897(-)$1	1	150	173	15.3650
(((((.(........).))))).	chr2:239078958-239079233(-)$1	1	34	57	15.2765
(((((((........))))))))	chr13:50234786-50235073(-)$1	1	194	217	15.7778
(((((((........))))))((	chr15:23003369-23003651(+)$1	1	18	41	12.9508
(((((((........))).))))	chr10:133781818-133782054(-)$1	1	199	222	15.9099
.((((.(........).))))..	chr2:105977440-105977709(-)$1	1	221	244	15.0618
((..(((........))).))))	chr19:34891084-34891313(+)$1	1	193	216	15.8861
(.(((.(........).))))).	chr10:89514150-89514397(-)$1	1	151	174	14.8661
.((((((........))))))))	chr19:50191555-50191799(+)$1	1	172	195	14.2272
((.((((........))))))))	chr6:36936271-36936499(-)$1	1	161	184	14.7670
(((((((........))))))))	chrX:153664505-153664795(+)$1	1	190	213	15.1916
(((((((........))))))))	chr3:127340818-127341086(+)$1	1	213	236	15.7778
.(.((((........)))).).)	chr3:25639421-25639727(-)$1	1	101	124	15.1954
..(((.(........))))))))	chr5:132441484-132441725(+)$1	1	127	150	15.6847
(.(((((........))))).).	chr11:126133545-126133786(-)$1	1	19	42	15.5201
(((.(((........))).))))	chr17:38612861-38613150(+)$1	1	192	215	14.2211
(((.(((........))).))))	chr17:79477094-79477305(-)$1	1	82	105	14.9146
(((((((........))))))))	chr17:80036166-80036461(-)$1	1	113	136	15.4951
...((((........))))))).	chr17:41166931-41167218(-)$1	1	186	209	14.7626
....(((........))))).))	chr4:99993379-99993655(-)$1	1	227	250	15.1986
(((((((........))))))))	chr1:174979319-174979577(+)$1	1	29	52	16.2338
..(((((........)))))(((	chr21:34896406-34896670(-)$1	1	128	151	13.2378
(((((((........))))))))	chr6:160103316-160103598(-)$1	1	120	143	16.2338
((..(((........))).))))	chr5:68660577-68660839(-)$1	1	96	119	15.4863
(((((((........))))))))	chr4:108955686-108955942(+)$1	1	11	34	15.7778
(.(((((........)))))...	chr6:166733598-166733829(-)$1	1	87	110	15.8026
(((((((........))).))))	chr2:136598239-136598498(-)$1	1	17	40	15.2888
(((((.(........).))))).	chr16:31202791-31203007(+)$1	1	102	125	15.3946
((.((((........)))).)))	chr11:111933385-111933679(+)$1	1	68	91	14.6289
..((.((........)).))..)	chr10:97365827-97366079(-)$1	1	151	174	13.5326
.(((.((........)).)))..	chr2:148692800-148693072(-)$1	1	235	258	14.8261
(((((.(........).))))).	chr16:31202775-31202991(+)$1	1	118	141	15.3946
((((.((........)).)))))	chr19:46112698-46112950(-)$1	1	185	208	13.1828
((((..(........)..)))).	chr2:170494001-170494313(+)$1	1	78	101	13.2988
.((((((........))))))..	chr12:96394511-96394771(-)$1	1	175	198	14.6164
(((((((........))))))))	chr14:35786484-35786735(+)$1	1	190	213	15.7778
..(((((........)))))..)	chr17:37006285-37006543(-)$1	1	231	254	15.4965
..(((((........)).)))..	chr12:123254438-123254700(+)$1	1	65	88	15.2739
(((((((........))))))).	chr15:64448009-64448303(-)$1	1	121	144	15.7343
(((((((........))))))).	chr20:2639181-2639431(-)$1	1	22	45	15.7343
((.((((........)))).)))	chr14:97347507-97347799(+)$1	1	263	286	14.6289
..(((((........))))))))	chr11:57510234-57510465(+)$1	1	148	171	15.1162
.((.(((........)))))...	chr18:3255845-3256105(+)$1	1	32	55	14.8820
.((((((........)).))))(	chr10:62554011-62554256(+)$1	1	71	94	12.9973
((..(((........)))....)	chr8:144898489-144898760(-)$1	1	26	49	15.0895
(.(((((........))))))))	chr9:100777891-100778098(+)$1	1	104	127	15.7000
..(((((........))))))))	chr12:54678485-54678688(+)$1	1	93	116	14.1802
....(((........)))....)	chr12:69995004-69995334(+)$1	1	71	94	15.9085
(((((((........))))))))	chr18:43669707-43669999(-)$1	1	74	97	15.4951
.((((((........))))))))	chr11:61564464-61564729(+)$1	1	66	89	14.1038
(((((((........))))))..	chrX:30237805-30238132(+)$1	1	184	207	14.5975
..(((((........)))))..)	chr11:75116571-75116813(+)$1	1	101	124	15.5106
.((((((........))))))..	chr8:27402194-27402458(+)$1	1	203	226	15.1046
((.((((........)))).)))	chr11:130013802-130014054(+)$1	1	217	240	14.6289
((..(((........))))))).	chr1:33478632-33478893(-)$1	1	171	194	14.5126
.((.(((........)))..)).	chr3:98298702-98298955(-)$1	1	138	161	13.8158
...((((........)))).)))	chr12:51637304-51637606(+)$1	1	124	147	15.3041
...((((........))))...)	chr3:33539833-33540113(-)$1	1	229	252	15.5237

#PSSM
g : 0.13	" : 0.11	e : 0.11	d : 0.11	! : 0.09	i : 0.08	# : 0.08	= : 0.04	b : 0.03	: : 0.03	$ : 0.03	' : 0.01	F : 0.01	a : 0.01	h : 0.01	% : 0.01	[ : 0.01	c : 0.01	
d : 0.14	g : 0.13	e : 0.09	f : 0.09	" : 0.08	i : 0.08	[ : 0.06	# : 0.06	b : 0.04	= : 0.03	! : 0.03	' : 0.01	a : 0.01	h : 0.01	: : 0.01	c : 0.01	$ : 0.01	% : 0.01	
e : 0.21	g : 0.11	f : 0.09	i : 0.08	d : 0.08	[ : 0.08	! : 0.06	c : 0.06	# : 0.06	b : 0.04	" : 0.03	= : 0.03	h : 0.01	
d : 0.21	e : 0.21	g : 0.11	f : 0.09	i : 0.08	! : 0.06	c : 0.06	[ : 0.06	# : 0.03	= : 0.03	b : 0.01	
c : 0.24	e : 0.19	d : 0.18	g : 0.11	f : 0.09	i : 0.06	[ : 0.04	= : 0.03	! : 0.01	
c : 0.19	d : 0.14	e : 0.14	g : 0.11	[ : 0.09	f : 0.09	b : 0.08	i : 0.06	= : 0.03	! : 0.01	
c : 0.19	d : 0.14	e : 0.14	g : 0.11	a : 0.11	f : 0.09	b : 0.08	i : 0.06	= : 0.03	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.19	d : 0.14	e : 0.14	g : 0.11	a : 0.11	f : 0.09	b : 0.08	i : 0.06	= : 0.03	
c : 0.21	d : 0.14	e : 0.14	g : 0.11	f : 0.09	] : 0.08	b : 0.08	i : 0.06	= : 0.03	2 : 0.01	
c : 0.22	e : 0.19	d : 0.16	g : 0.11	f : 0.09	] : 0.08	i : 0.06	= : 0.03	2 : 0.01	
d : 0.22	e : 0.19	g : 0.11	f : 0.09	] : 0.09	i : 0.06	c : 0.06	b : 0.04	= : 0.03	4 : 0.03	2 : 0.01	
e : 0.24	g : 0.13	f : 0.09	d : 0.09	i : 0.08	c : 0.08	] : 0.08	b : 0.04	3 : 0.03	= : 0.03	4 : 0.03	h : 0.01	2 : 0.01	
d : 0.18	g : 0.13	e : 0.13	f : 0.09	i : 0.08	c : 0.06	3 : 0.04	= : 0.04	2 : 0.04	4 : 0.04	b : 0.03	] : 0.03	7 : 0.01	a : 0.01	h : 0.01	
d : 0.18	g : 0.13	e : 0.13	3 : 0.08	i : 0.08	2 : 0.08	4 : 0.08	b : 0.06	= : 0.04	c : 0.03	7 : 0.01	F : 0.01	] : 0.01	a : 0.01	h : 0.01	
e : 0.14	d : 0.13	3 : 0.09	i : 0.08	b : 0.08	] : 0.06	: : 0.04	= : 0.04	4 : 0.04	h : 0.03	F : 0.03	2 : 0.03	f : 0.03	5 : 0.03	c : 0.03	7 : 0.01	g : 0.01	H : 0.01	

#score	913.7212817234713
#seq	61
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_UTR_m2_run1.txt

#BEAR
fffffddddvvvvvvvvvvvvvddddC	chr15:67391105-67391425(+)$1	320	64	91	13.2002
"""ddddddddqqqqqqqqdddd]ddd	chr2:241499731-241499989(-)$1	258	183	210	8.4668
======[bbuuuuuuuuuuuubb]===	chr5:154135939-154136180(+)$1	241	46	73	15.2932
:ccc[ddddrrrrrrrrrdddd]ccc:	chr17:75316246-75316507(+)$1	261	230	257	9.7132
"""a[ddddqqqqqqqqdddd]a4444	chr15:72521828-72522093(-)$1	265	97	124	8.0661
!!dddd!!cccqqqqqqqqccc22ddd	chr19:575271-575533(+)$1	262	162	189	8.3480
%%gggggggtttttttttttggggggg	chr15:72520883-72521148(-)$1	265	189	216	15.2119
b!!ffffffssssssssssffffff44	chr11:2158434-2158686(-)$1	252	126	153	13.2092
FFFFddddtttttttttttdddda[dd	chr2:232574635-232574886(+)$1	251	149	176	14.3568
a[a[eeeeesssssssssseeeee]a]	chr19:9785350-9785625(-)$1	275	112	139	14.8535
!!eeeeexxxxxxxxxxxxxxxeeeee	chr7:2685063-2685309(+)$1	246	93	120	12.5466
ffff!!ddddrrrrrrrrrdddd]fff	chr6:11198780-11199079(-)$1	299	193	220	11.4237
ff[dddduuuuuuuuuuuudddd]fff	chr14:21702883-21703115(-)$1	232	162	189	15.7705
gggggggvvvvvvvvvvvvvggggggg	chr20:36155856-36156134(-)$1	278	46	73	14.9636
[hhhhhhhhsssssssssshhhhhhhh	chr8:101963094-101963363(-)$1	269	8	35	12.9642
dddd[ddddssssssssssdddd333d	chr2:173465738-173466073(+)$1	335	127	154	15.0792
""bb[ddddssssssssssdddd]bbb	chr4:76597587-76597856(-)$1	269	201	228	14.7383
ggg:eeeeettttttttttteeeeeEE	chr11:66406209-66406446(+)$1	237	186	213	13.3078
ee[dddd[aqqqqqqqqa]dddd]eee	chr20:62566493-62566717(+)$1	224	132	159	8.1944
dddccccccssssssssssccc22ccc	chr11:66393897-66394139(+)$1	242	9	36	14.6765
dddd[ddddssssssssssdddd]ddd	chr17:75318617-75318871(+)$1	254	212	239	15.1624
"hhhhhhhhsssssssssshhhhhhhh	chr16:87362540-87362793(-)$1	253	205	232	13.0141
dddd[eeeeerrrrrrrrreeeeeddd	chr12:133404782-133405078(-)$1	296	109	136	10.8177
dddccccccssssssssssccc22ccc	chr11:66393823-66394093(+)$1	270	83	110	14.6765
bgggggggbbwwwwwwwwwwwwwwbb]	chr16:75281984-75282248(-)$1	264	98	125	13.6703
$$eeeee[bbrrrrrrrrrbb]eeeee	chr4:763946-764199(-)$1	253	38	65	10.2112
gggg[bbvvvvvvvvvvvvvbbggggg	chr5:138629426-138629692(+)$1	266	29	56	14.0905
d[ccc[bbtttttttttttbb]cccdd	chr2:242751910-242752222(+)$1	312	108	135	14.9688
chhhhhhhhwwwwwwwwwwwwwwhhhh	chr21:44269593-44269862(-)$1	269	81	108	14.4070
ccc!!eeeeeooooooeeeee]ccc]d	chr2:223726320-223726589(+)$1	269	141	168	5.9501
[eeeee[cccqqqqqqqqccceeeeed	chr17:75452336-75452622(+)$1	286	99	126	8.2615
h"""eeeeesssssssssseeeee]hh	chr7:6522908-6523164(-)$1	256	172	199	14.1070
ffffddddtttttttttttdddd]fff	chr21:44263221-44263496(-)$1	275	176	203	16.0828
bhhhhhhhhttttttttttthhhhhhh	chr6:170101807-170102134(-)$1	327	273	300	14.3492
fffff[cccsssssssssscccfffff	chr3:187455548-187455804(-)$1	256	187	214	14.2598
ffffff[cccrrrrrrrrrccc]ffff	chr1:21112686-21112933(-)$1	247	121	148	10.8006
"gggggggcccrrrrrrrrrccc4444	chr3:4402907-4403203(-)$1	296	131	158	10.8782

#otherMatches

#Seq PSSM
GCUCAGCUGGGGGAUUUGGGGACGGUG	chr15:67391105-67391425(+)$1	320	64	91	13.2002
CCCCGCGGCCUGUGGCACUGGGCUUGC	chr2:241499731-241499989(-)$1	258	183	210	8.4668
GCCGCAGCGGUUAGUGGGCAACGGUGU	chr5:154135939-154136180(+)$1	241	46	73	15.2932
ACUCGGGGCUUUAUUUAUGCCUGGGGG	chr17:75316246-75316507(+)$1	261	230	257	9.7132
GGGAGGGGGACAGGAAGCCUCGUAAGG	chr15:72521828-72522093(-)$1	265	97	124	8.0661
GACCGGAGGGCCGGGGUGUGCUAGCUG	chr19:575271-575533(+)$1	262	162	189	8.3480
ACCUUUCAAUUAUUCUGCUUUUGAGAG	chr15:72520883-72521148(-)$1	265	189	216	15.2119
GAGUCGGCUCACACAUAAAAGCUGAGG	chr11:2158434-2158686(-)$1	252	126	153	13.2092
GCGAGGGCGAUGAGUAGUAGCCCGAGA	chr2:232574635-232574886(+)$1	251	149	176	14.3568
GCGUCGGGAAGUGUGUUUGUUCCGCCU	chr19:9785350-9785625(-)$1	275	112	139	14.8535
GUGGUCUGUCUUUUGUGUUCAGAGACC	chr7:2685063-2685309(+)$1	246	93	120	12.5466
cucugacuuuaaaaugcuggaagaaga	chr6:11198780-11199079(-)$1	299	193	220	11.4237
CUUUUGAAGAAAAUUAUACUUAAUGGG	chr14:21702883-21703115(-)$1	232	162	189	15.7705
CUGGGGUUUUCCUUCCGCAUACCCCGG	chr20:36155856-36156134(-)$1	278	46	73	14.9636
GUGGGAGGAAGGACUUGAAUUUUCCUG	chr8:101963094-101963363(-)$1	269	8	35	12.9642
GGAAUAAUGAACUUAAUAACAUUUUUU	chr2:173465738-173466073(+)$1	335	127	154	15.0792
GACGAUCCCUUAUUGACUCGGGAAUGG	chr4:76597587-76597856(-)$1	269	201	228	14.7383
CCCUGAGAAUACCUUGCUUUUUUUCGC	chr11:66406209-66406446(+)$1	237	186	213	13.3078
UAAAGGUGGCUCUGAAAUGGCCUCUGG	chr20:62566493-62566717(+)$1	224	132	159	8.1944
CCAACUGUCUUCUUCUCUCGACUAGGU	chr11:66393897-66394139(+)$1	242	9	36	14.6765
GGGCGCCUCUUCCCUCACUGAGGGGCU	chr17:75318617-75318871(+)$1	254	212	239	15.1624
UCCUGCAGGUGGCCCAUUUCCUGCAGG	chr16:87362540-87362793(-)$1	253	205	232	13.0141
GGCCGACUUGUCUUCAUUCCAGGUGGC	chr12:133404782-133405078(-)$1	296	109	136	10.8177
CCAACUGUCUUCUUCUCUCGACUAGGU	chr11:66393823-66394093(+)$1	270	83	110	14.6765
AGGAGGGGUGGGAAAGGCCUGUGACAU	chr16:75281984-75282248(-)$1	264	98	125	13.6703
CAGGGUGACAGUUUACAAAUGCCGCCU	chr4:763946-764199(-)$1	253	38	65	10.2112
AGAGAGGUAccucuccuuuucccucuc	chr5:138629426-138629692(+)$1	266	29	56	14.0905
CACAGGACAUUGCGAUGGGGUGCUGGC	chr2:242751910-242752222(+)$1	312	108	135	14.9688
CAUGGUGGAUGUUUUCAUGUUGUUCCG	chr21:44269593-44269862(-)$1	269	81	108	14.4070
UGCGUGAGGUGGGUCGACCUUGGUGAU	chr2:223726320-223726589(+)$1	269	141	168	5.9501
GUUACCUGCACUAGGCUUUGUGGUGAG	chr17:75452336-75452622(+)$1	286	99	126	8.2615
UGGGUCCAGGAUCACACCGCUGGGGAG	chr7:6522908-6523164(-)$1	256	172	199	14.1070
gaugagcuuguucggauguagcuccau	chr21:44263221-44263496(-)$1	275	176	203	16.0828
UUCCGCCGUGACCGCUUCCAACGGCGG	chr6:170101807-170102134(-)$1	327	273	300	14.3492
AUGAGAGGGCUGUGUCAUUCCCCUCAU	chr3:187455548-187455804(-)$1	256	187	214	14.2598
GGUGGGAAACGUAGAACUGGUUACUCG	chr1:21112686-21112933(-)$1	247	121	148	10.8006
CAGAGGGGCAGUCAUAAGCUCUGUUUC	chr3:4402907-4403203(-)$1	296	131	158	10.8782

#DB
)))))((((.............))))(	chr15:67391105-67391425(+)$1	1	64	91	13.2002
...((((((((........)))).)))	chr2:241499731-241499989(-)$1	1	183	210	8.4668
((((((.((............)).)))	chr5:154135939-154136180(+)$1	1	46	73	15.2932
.(((.((((.........)))).))).	chr17:75316246-75316507(+)$1	1	230	257	9.7132
...(.((((........)))).)....	chr15:72521828-72522093(-)$1	1	97	124	8.0661
..((((..(((........)))..)))	chr19:575271-575533(+)$1	1	162	189	8.3480
..(((((((...........)))))))	chr15:72520883-72521148(-)$1	1	189	216	15.2119
(..((((((..........))))))..	chr11:2158434-2158686(-)$1	1	126	153	13.2092
))))((((...........))))(.((	chr2:232574635-232574886(+)$1	1	149	176	14.3568
(.(.(((((..........))))).).	chr19:9785350-9785625(-)$1	1	112	139	14.8535
..(((((...............)))))	chr7:2685063-2685309(+)$1	1	93	120	12.5466
((((..((((.........)))).)))	chr6:11198780-11199079(-)$1	1	193	220	11.4237
((.((((............)))).)))	chr14:21702883-21703115(-)$1	1	162	189	15.7705
(((((((.............)))))))	chr20:36155856-36156134(-)$1	1	46	73	14.9636
.((((((((..........))))))))	chr8:101963094-101963363(-)$1	1	8	35	12.9642
((((.((((..........))))...)	chr2:173465738-173466073(+)$1	1	127	154	15.0792
..((.((((..........)))).)))	chr4:76597587-76597856(-)$1	1	201	228	14.7383
))).(((((...........)))))))	chr11:66406209-66406446(+)$1	1	186	213	13.3078
((.((((.(........).)))).)))	chr20:62566493-62566717(+)$1	1	132	159	8.1944
(((((((((..........)))..)))	chr11:66393897-66394139(+)$1	1	9	36	14.6765
((((.((((..........)))).)))	chr17:75318617-75318871(+)$1	1	212	239	15.1624
.((((((((..........))))))))	chr16:87362540-87362793(-)$1	1	205	232	13.0141
((((.(((((.........))))))))	chr12:133404782-133405078(-)$1	1	109	136	10.8177
(((((((((..........)))..)))	chr11:66393823-66394093(+)$1	1	83	110	14.6765
((((((((((..............)).	chr16:75281984-75282248(-)$1	1	98	125	13.6703
..(((((.((.........)).)))))	chr4:763946-764199(-)$1	1	38	65	10.2112
((((.((.............)))))))	chr5:138629426-138629692(+)$1	1	29	56	14.0905
(.(((.((...........)).)))))	chr2:242751910-242752222(+)$1	1	108	135	14.9688
)((((((((..............))))	chr21:44269593-44269862(-)$1	1	81	108	14.4070
(((..(((((......))))).))).)	chr2:223726320-223726589(+)$1	1	141	168	5.9501
.(((((.(((........)))))))))	chr17:75452336-75452622(+)$1	1	99	126	8.2615
(...(((((..........))))).))	chr7:6522908-6523164(-)$1	1	172	199	14.1070
((((((((...........)))).)))	chr21:44263221-44263496(-)$1	1	176	203	16.0828
(((((((((...........)))))))	chr6:170101807-170102134(-)$1	1	273	300	14.3492
(((((.(((..........))))))))	chr3:187455548-187455804(-)$1	1	187	214	14.2598
((((((.(((.........))).))))	chr1:21112686-21112933(-)$1	1	121	148	10.8006
.((((((((((.........)))....	chr3:4402907-4403203(-)$1	1	131	158	10.8782

#PSSM
f : 0.16	d : 0.16	" : 0.13	b : 0.08	g : 0.08	! : 0.05	[ : 0.05	c : 0.05	= : 0.02	: : 0.02	% : 0.02	F : 0.02	a : 0.02	e : 0.02	$ : 0.02	h : 0.02	
f : 0.16	g : 0.13	d : 0.13	" : 0.10	h : 0.10	! : 0.08	c : 0.05	[ : 0.05	e : 0.05	= : 0.02	% : 0.02	F : 0.02	$ : 0.02	
d : 0.16	g : 0.16	f : 0.13	h : 0.10	" : 0.08	c : 0.08	e : 0.08	[ : 0.05	= : 0.02	! : 0.02	F : 0.02	a : 0.02	b : 0.02	
d : 0.18	f : 0.16	g : 0.13	c : 0.10	h : 0.10	e : 0.08	= : 0.02	a : 0.02	F : 0.02	[ : 0.02	b : 0.02	: : 0.02	! : 0.02	" : 0.02	
[ : 0.18	d : 0.16	e : 0.16	f : 0.10	g : 0.10	h : 0.10	c : 0.08	! : 0.05	= : 0.02	
d : 0.32	e : 0.21	g : 0.10	h : 0.10	f : 0.05	c : 0.05	[ : 0.05	= : 0.02	! : 0.02	b : 0.02	
d : 0.32	e : 0.18	g : 0.10	h : 0.10	[ : 0.08	c : 0.08	b : 0.05	! : 0.02	f : 0.02	
d : 0.27	e : 0.13	c : 0.13	h : 0.10	g : 0.08	b : 0.05	v : 0.05	[ : 0.05	! : 0.02	f : 0.02	x : 0.02	u : 0.02	
d : 0.21	c : 0.18	e : 0.13	h : 0.10	b : 0.08	t : 0.08	v : 0.05	g : 0.02	f : 0.02	x : 0.02	u : 0.02	a : 0.02	
s : 0.29	t : 0.16	c : 0.10	v : 0.08	d : 0.05	u : 0.05	q : 0.05	e : 0.05	b : 0.05	r : 0.02	x : 0.02	w : 0.02	
s : 0.29	t : 0.16	r : 0.13	v : 0.08	q : 0.08	u : 0.05	c : 0.05	w : 0.05	d : 0.02	x : 0.02	o : 0.02	
s : 0.29	r : 0.16	t : 0.16	q : 0.13	v : 0.08	u : 0.05	w : 0.05	x : 0.02	o : 0.02	
s : 0.29	r : 0.16	t : 0.16	q : 0.13	v : 0.08	u : 0.05	w : 0.05	x : 0.02	o : 0.02	
s : 0.29	r : 0.16	t : 0.16	q : 0.13	v : 0.08	u : 0.05	w : 0.05	x : 0.02	o : 0.02	
s : 0.29	r : 0.16	t : 0.16	q : 0.13	v : 0.08	u : 0.05	w : 0.05	x : 0.02	o : 0.02	
s : 0.29	r : 0.16	t : 0.16	q : 0.13	v : 0.08	u : 0.05	w : 0.05	x : 0.02	o : 0.02	
s : 0.29	r : 0.16	t : 0.16	q : 0.13	v : 0.08	u : 0.05	w : 0.05	x : 0.02	e : 0.02	
s : 0.29	r : 0.16	t : 0.16	v : 0.08	q : 0.08	u : 0.05	w : 0.05	d : 0.02	x : 0.02	a : 0.02	e : 0.02	
s : 0.29	t : 0.16	r : 0.13	v : 0.08	q : 0.05	u : 0.05	d : 0.05	w : 0.05	x : 0.02	] : 0.02	e : 0.02	c : 0.02	
d : 0.29	c : 0.16	e : 0.10	v : 0.08	t : 0.08	h : 0.05	w : 0.05	b : 0.05	u : 0.02	f : 0.02	x : 0.02	r : 0.02	
d : 0.29	c : 0.18	e : 0.13	h : 0.08	b : 0.08	g : 0.05	w : 0.05	v : 0.02	u : 0.02	f : 0.02	x : 0.02	
d : 0.27	c : 0.16	e : 0.13	] : 0.10	h : 0.08	b : 0.05	g : 0.05	w : 0.05	v : 0.02	f : 0.02	x : 0.02	
d : 0.27	e : 0.18	2 : 0.08	g : 0.08	h : 0.08	c : 0.08	] : 0.05	f : 0.05	w : 0.05	b : 0.02	a : 0.02	
] : 0.21	e : 0.18	h : 0.10	c : 0.08	2 : 0.08	g : 0.08	f : 0.08	4 : 0.05	d : 0.02	a : 0.02	3 : 0.02	w : 0.02	
f : 0.16	d : 0.13	c : 0.13	e : 0.13	h : 0.10	g : 0.08	4 : 0.05	] : 0.05	b : 0.05	= : 0.02	[ : 0.02	3 : 0.02	
d : 0.18	f : 0.13	h : 0.13	e : 0.10	c : 0.08	4 : 0.08	g : 0.08	b : 0.05	= : 0.02	a : 0.02	3 : 0.02	E : 0.02	] : 0.02	
d : 0.24	f : 0.13	h : 0.13	4 : 0.08	g : 0.08	e : 0.08	] : 0.05	c : 0.05	C : 0.02	= : 0.02	: : 0.02	b : 0.02	E : 0.02	

#score	470.09297136638384
#seq	37
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_CDS_m1_run2.txt

#BEAR
eeeeeeeeee[dddd[cccnnnnncccddddeeeee444	chr16:476002-476226(+)$1	224	26	65	13.4121
ccc[===============nnnnn===============	chr13:115009269-115009520(+)$1	251	119	158	20.2112
c####ffffffdddd[cccooooooccc]dddd22ffff	chr14:74754793-74755056(-)$1	263	26	65	12.6892
dd22cccbb[iiiiiiiiiooooooiiiiiiiii]bbA}	chr19:39440774-39440991(-)$1	217	173	212	14.1111
============[ccccccooooooccc333ccc]====	chr20:3451908-3452141(+)$1	233	60	99	17.6010
ggg[ccc[bb[ccc[cccooooooccc]ccc]bb]ccc]	chr9:139701014-139701313(-)$1	299	149	188	14.3707
[dddd[bb[==========nnnnn==========]bb]d	chr1:1334368-1334654(-)$1	286	84	123	17.8188
eeeeeeeeee[dddd[cccnnnnncccddddeeeee444	chr16:475937-476151(+)$1	214	91	130	13.4121
ddd####eeeee[bb[cccoooooocccbb]eeeeeddd	chr22:21212863-21213070(-)$1	207	32	71	13.0402
fff[ffffffeeeee[cccooooooccc4444eeeee44	chr11:67166515-67166797(-)$1	282	201	240	13.7395
==========[ddddrrrrrrrrrdddd]==========	chr16:67997780-67998051(-)$1	271	21	60	13.5303
====================mmmm===============	chr7:96635263-96635546(-)$1	283	106	145	18.0754
ffa[ggggggg[bb!!bboooooobb4444bbggggggg	chr16:89787126-89787369(-)$1	243	103	142	13.7682
d!!ddddbbiiiiiiiii[bblllbb]iiiiiiiii]bb	chr11:71935947-71936225(+)$1	278	220	259	13.6787
cc!!bb[eeeee[a"""bbnnnnnbb333aeeeee]bb]	chr1:151315160-151315406(-)$1	246	170	209	13.6554
Fdddd[gggggggbbcccooooooccc]bb]gggggggd	chr22:42334996-42335253(-)$1	257	85	124	13.6994
==============[bb[aooooooa]bb==========	chr2:32582272-32582525(+)$1	253	69	108	17.9900
dddd]a::============mmmm============eee	chr22:47133800-47134077(-)$1	277	109	148	13.7364
eeeeeeeeee[dddd[cccnnnnncccddddeeeee444	chr16:475951-476172(+)$1	221	77	116	13.4121
bb[a[ggggggg[aeeeeennnnneeeee]a]ggggggg	chr9:139137388-139137624(-)$1	236	154	193	13.4205
effffff!!a!!cccbbbbnnnnnbb]bb]ccc333a22	chr7:39990444-39990679(+)$1	235	107	146	12.7152
d!!ccc"""==========nnnnn==========22ccc	chr9:35092151-35092415(-)$1	264	117	156	18.3675
bb####=============nnnnn=============33	chr22:29446470-29446764(+)$1	294	98	137	19.8451
a!!dddd####eeeeecccooooooccc333eeeee333	chr20:25656927-25657215(+)$1	288	27	66	14.3612
!bb!!dddd[ggggggg[ccclllcccggggggg]dddd	chr22:38902121-38902348(-)$1	227	59	98	12.3806
[dddd[bb[==========nnnnn==========]bb]d	chr1:1334456-1334754(-)$1	298	184	223	17.8188
:===========[ffffffnnnnnffffff=========	chr9:123292187-123292441(-)$1	254	32	71	15.7230
bb[ffffff[a[ccc[cccnnnnnccc]ccca]ffffff	chr8:145001399-145001674(-)$1	275	115	154	13.7439
===============!!bbmmmmbb==============	chr18:77894632-77894891(+)$1	259	22	61	16.5203
bb!!cccbb[iiiiiiiiiooooooiiiiiiiii]bb]c	chr19:39440611-39440827(-)$1	216	9	48	16.8557
bbeeeee[ggggggg[ccclllccc]ggggggg]eeeee	chr14:31642714-31643003(-)$1	289	108	147	12.7641
c[ccc[bb"""dddd[cccnnnnnccc]dddd333bbcc	chr19:45211133-45211386(-)$1	253	85	124	14.0170
ff[eeeee[gggggggcccnnnnnccc]gggggggeeee	chr15:41812789-41813075(-)$1	286	99	138	15.1345
==============[bb[aooooooa]bb==========	chr2:32582245-32582472(+)$1	227	96	135	17.9900
d"""bb[ccc[a[ffffffooooooffffffa]ccc]bb	chr17:74288755-74289000(-)$1	245	85	124	12.6534
cc]bbccc[iiiiiiiiiaooooooa]iiiiiiiiiccc	chr13:96705316-96705567(-)$1	251	74	113	16.5101
eeeeeeeeee[iiiiiiiiillliiiiiiiiieeeee22	chr12:56522132-56522384(+)$1	252	180	219	14.0043
ba[============ddddnnnnndddd4444=======	chr2:220042895-220043178(+)$1	283	22	61	16.5443
a[ccc!!ccc[bb!!cccooooooccc22bb]cccccc]	chr3:142242798-142243087(-)$1	289	112	151	13.5281
ee:==============qqqqqqqq==============	chr1:156621257-156621539(-)$1	282	214	253	13.7315
dd::bb[bb[==========lll==========]bb]bb	chr9:139137424-139137635(-)$1	211	124	163	13.9478
h$$$$$ggggggg[a!!bbnnnnnbb22a22ggggggg8	chr20:8782688-8782967(+)$1	279	20	59	12.9195
DD:eeeee[==========lll==========4444eee	chr1:43913837-43914092(+)$1	255	30	69	13.3581
ffff"""dddd[gggggggnnnnngggggggdddd]fff	chr16:58550707-58550969(+)$1	262	105	144	12.7468
ccc[bb[==========oooooo==========]bb]cc	chrX:109560905-109561214(-)$1	309	142	181	16.9883
dd"""bb[bb[iiiiiiiiimmmmiiiiiiiii]bb]bb	chr3:38178318-38178585(-)$1	267	85	124	13.5497
dd]ddddbb[iiiiiiiiiooooooiiiiiiiii]bb::	chr19:39440716-39440974(-)$1	258	156	195	14.0743
ggggggg[ccc[a[fffffflllffffff]a]cccgggg	chr11:64948429-64948695(-)$1	266	83	122	11.3386
ggggbb[==========cccmmmmccc]==========2	chr3:4508694-4508948(-)$1	254	78	117	16.2797
c:===========[cccbbnnnnnbb]ccc]========	chr2:27435153-27435436(+)$1	283	213	252	16.8279
!!a[a[a[ffffff[cccoooooocccffffff]a22a]	chr22:21212813-21213063(-)$1	250	9	48	13.4265
fff[a!!eeeeedddd[bbnnnnnbb]dddd]eeeee]a	chr8:144642816-144643096(+)$1	280	76	115	12.5045

#otherMatches

#Seq PSSM
cgcccccgggcucggagccgccggggcccgacccggagc	chr16:476002-476226(+)$1	224	26	65	13.4121
UGGAUGUGGUAGUGUCUUUAGCUGAGAGACAUUAUUAUA	chr13:115009269-115009520(+)$1	251	119	158	20.2112
GUUCCCCAUGAUGGCAGGUAGCAGGGCUGGCCAUUUCAU	chr14:74754793-74755056(-)$1	263	26	65	12.6892
GCCUGGCGCGACAUAGUGGACGGGCCCACUGUGUGGCUG	chr19:39440774-39440991(-)$1	217	173	212	14.1111
ugcugcugcugcugcugcCCUGUGAggccgaggccgcgg	chr20:3451908-3452141(+)$1	233	60	99	17.6010
AGGGACCUGGUGUGUGGCAGCUCAGCCUCACUCCCGGUA	chr9:139701014-139701313(-)$1	299	149	188	14.3707
CAGGCUGUACUCCGGGGUGCUCAUCACCUUGGAGAACUG	chr1:1334368-1334654(-)$1	286	84	123	17.8188
cgcccccgggcucggagccgccggggcccgacccggagc	chr16:475937-476151(+)$1	214	91	130	13.4121
GGGCAGCGCCGCGGCUCGUGAggugauggcggcggcccc	chr22:21212863-21213070(-)$1	207	32	71	13.0402
CGGAUCAUGCGGCCCACAGAUGUGCCUGACCAGGGCCUG	chr11:67166515-67166797(-)$1	282	201	240	13.7395
GGCCUGGGGCUUGCCCCACCUCCCGGCAUGCCCCGGGCU	chr16:67997780-67998051(-)$1	271	21	60	13.5303
gcggcggcggcggcggcggcuguugcuguugcugcugcu	chr7:96635263-96635546(-)$1	283	106	145	18.0754
GCCGCUGCGGCCGGGGACGGCACGGUGAAGCCGCUGCAG	chr16:89787126-89787369(-)$1	243	103	142	13.7682
GAGACAGCGAGAGCGUGGCGGGGGCCUUCGCGCUCUGCG	chr11:71935947-71936225(+)$1	278	220	259	13.6787
AUGACAAGGGUGUCAAGAGGACAGCUGAAGUACCUGUGA	chr1:151315160-151315406(-)$1	246	170	209	13.6554
CCUGGUGCGCGUGCUGCAGAUCUGUGCUGGCCACGUGCC	chr22:42334996-42335253(-)$1	257	85	124	13.6994
GCCCCGGCUGCUCCUcggcggcgggggcgggggcggccg	chr2:32582272-32582525(+)$1	253	69	108	17.9900
GCCCGCGCGGGCUCUGCUGCGCUGGUGGCGGAgcccggg	chr22:47133800-47134077(-)$1	277	109	148	13.7364
cgcccccgggcucggagccgccggggcccgacccggagc	chr16:475951-476172(+)$1	221	77	116	13.4121
GGACGCCGUGUGGGUGCUGGACAGCGGCAGCGUGCGCGG	chr9:139137388-139137624(-)$1	236	154	193	13.4205
GCGGCGUCGCGGGCCCCGCGCCGGGCAGGAGGCGGAGAA	chr7:39990444-39990679(+)$1	235	107	146	12.7152
CCUGGGCUGGCUGGGGGUCCAAGAGGCCCCUGGCAACCC	chr9:35092151-35092415(-)$1	264	117	156	18.3675
GGACUACUCGGUGAGUGUGCAGUACACGCUCACCGAGGA	chr22:29446470-29446764(+)$1	294	98	137	19.8451
CUUGCACACAAAAGGCUUCUCCCCUGAAUGCGCCUUCAA	chr20:25656927-25657215(+)$1	288	27	66	14.3612
AGGAGACGCCUAAACCGCGGCACUGCCCGGUUUGAGCGU	chr22:38902121-38902348(-)$1	227	59	98	12.3806
CAGGCUGUACUCCGGGGUGCUCAUCACCUUGGAGAACUG	chr1:1334456-1334754(-)$1	298	184	223	17.8188
GGAGUUGAAGCUGUCUUUGAAGAGCAAAGAAGCUUUAAU	chr9:123292187-123292441(-)$1	254	32	71	15.7230
GGACGGGGCGGCUGGGCGUGCCCUGCGGCCACGGCUCUG	chr8:145001399-145001674(-)$1	275	115	154	13.7439
GAUGACUCCUGCAGGCCAGAUGACUCCUGCAGGGGUUAU	chr18:77894632-77894891(+)$1	259	22	61	16.5203
GCCUGGCGCGACAUAGUGGACGGGCCCACUGUGUGGCUG	chr19:39440611-39440827(-)$1	216	9	48	16.8557
GCUGCUGCUGGUGGUACUGUUUCAGGACCAUCAUCAGCA	chr14:31642714-31643003(-)$1	289	108	147	12.7641
CAGGUUCCUGACGGCAGCUGGCUGAGCAGCCGGUUGGGC	chr19:45211133-45211386(-)$1	253	85	124	14.0170
GCUAGUUUUGGAGAGCUGGCGCCCCCAGGCUCUCUGGGC	chr15:41812789-41813075(-)$1	286	99	138	15.1345
GCCCCGGCUGCUCCUcggcggcgggggcgggggcggccg	chr2:32582245-32582472(+)$1	227	96	135	17.9900
ccaaccugguagagaucagcaugguuugauccagccugg	chr17:74288755-74289000(-)$1	245	85	124	12.6534
GCUCCGGGACGGUCGCCGCGUCCAAGUCGGUGACUGCCC	chr13:96705316-96705567(-)$1	251	74	113	16.5101
GGCCGGGGCAGUGGGACUCAGCGUGGGUUUCGUGCUCUU	chr12:56522132-56522384(+)$1	252	180	219	14.0043
GCCGCGUCACGUGACGGGCUCAGCGCUCCGCAGUCACGU	chr2:220042895-220043178(+)$1	283	22	61	16.5443
GUGCUUUUGAAAGGUUGCCAAGAUGCAAACUCUCAAGCU	chr3:142242798-142243087(-)$1	289	112	151	13.5281
CGAUAGCCUCUAGUCCAUCAgaggcuggguuggaggcug	chr1:156621257-156621539(-)$1	282	214	253	13.7315
ccgggcgcgggcggugcggcgcggcUGUACCGCGCGGGC	chr9:139137424-139137635(-)$1	211	124	163	13.9478
GGUUCCUCCUCAUUCUUGUCGGAAACUUGCCAUGAGGAU	chr20:8782688-8782967(+)$1	279	20	59	12.9195
UCAGCUGGCAGCCCUGGGGAGGCCUCAGGGCUUAUUCUA	chr1:43913837-43914092(+)$1	255	30	69	13.3581
CCAAUCUAGAAUACUCUGCGGUGAGUGGAGUUUCUCUUG	chr16:58550707-58550969(+)$1	262	105	144	12.7468
CGGCGGCGGCGGCGGGGGGAUCGCCCUGUCGCCACCUCC	chrX:109560905-109561214(-)$1	309	142	181	16.9883
CCACCUGAGGGGUCCGGCCGAUUCCGGCUGGAUGCCGCA	chr3:38178318-38178585(-)$1	267	85	124	13.5497
GCCUGGCGCGACAUAGUGGACGGGCCCACUGUGUGGCUG	chr19:39440716-39440974(-)$1	258	156	195	14.0743
ucucuaacguucugggguuucuugaACCUGGAAACUUAG	chr11:64948429-64948695(-)$1	266	83	122	11.3386
CUUGCUGCUGCUGCUCUCGCUGCUGUGUGGAGCGGCAGG	chr3:4508694-4508948(-)$1	254	78	117	16.2797
CAGGGUCGCUGGCCAGCCGUGCGUCGCGCUCGCCAGCGG	chr2:27435153-27435436(+)$1	283	213	252	16.8279
GGAGCGGGGAGCCGGCGGGCAGCGCCGCGGCUCGUGAgg	chr22:21212813-21213063(-)$1	250	9	48	13.4265
GCGGGAGGGCUCGGGCCGGUUUUCCCUGCCCGGAGCCAC	chr8:144642816-144643096(+)$1	280	76	115	12.5045

#DB
((((((((((.((((.(((.....))))))))))))...	chr16:476002-476226(+)$1	1	26	65	13.4121
(((.(((((((((((((((.....)))))))))))))))	chr13:115009269-115009520(+)$1	1	119	158	20.2112
(....((((((((((.(((......))).))))..))))	chr14:74754793-74755056(-)$1	1	26	65	12.6892
))..)))((.(((((((((......))))))))).))).	chr19:39440774-39440991(-)$1	1	173	212	14.1111
((((((((((((.((((((......)))...))).))))	chr20:3451908-3452141(+)$1	1	60	99	17.6010
(((.(((.((.(((.(((......))).))).)).))).	chr9:139701014-139701313(-)$1	1	149	188	14.3707
.((((.((.((((((((((.....)))))))))).)).)	chr1:1334368-1334654(-)$1	1	84	123	17.8188
((((((((((.((((.(((.....))))))))))))...	chr16:475937-476151(+)$1	1	91	130	13.4121
(((....(((((.((.(((......))))).))))))))	chr22:21212863-21213070(-)$1	1	32	71	13.0402
(((.(((((((((((.(((......)))....)))))..	chr11:67166515-67166797(-)$1	1	201	240	13.7395
((((((((((.((((.........)))).))))))))))	chr16:67997780-67998051(-)$1	1	21	60	13.5303
((((((((((((((((((((....)))))))))))))))	chr7:96635263-96635546(-)$1	1	106	145	18.0754
(((.(((((((.((..((......))....)))))))))	chr16:89787126-89787369(-)$1	1	103	142	13.7682
(..(((((((((((((((.((...)).))))))))).))	chr11:71935947-71936225(+)$1	1	220	259	13.6787
((..((.(((((.(...((.....))...)))))).)).	chr1:151315160-151315406(-)$1	1	170	209	13.6554
(((((.((((((((((((......))).)).))))))))	chr22:42334996-42335253(-)$1	1	85	124	13.6994
((((((((((((((.((.(......).))))))))))))	chr2:32582272-32582525(+)$1	1	69	108	17.9900
)))).)..((((((((((((....))))))))))))(((	chr22:47133800-47134077(-)$1	1	109	148	13.7364
((((((((((.((((.(((.....))))))))))))...	chr16:475951-476172(+)$1	1	77	116	13.4121
((.(.(((((((.((((((.....))))).).)))))))	chr9:139137388-139137624(-)$1	1	154	193	13.4205
(((((((..(..(((((((.....)).)).)))...)..	chr7:39990444-39990679(+)$1	1	107	146	12.7152
(..(((...((((((((((.....))))))))))..)))	chr9:35092151-35092415(-)$1	1	117	156	18.3675
((....(((((((((((((.....)))))))))))))..	chr22:29446470-29446764(+)$1	1	98	137	19.8451
(..((((....((((((((......)))...)))))...	chr20:25656927-25657215(+)$1	1	27	66	14.3612
.((..((((.(((((((.(((...)))))))))).))))	chr22:38902121-38902348(-)$1	1	59	98	12.3806
.((((.((.((((((((((.....)))))))))).)).)	chr1:1334456-1334754(-)$1	1	184	223	17.8188
.(((((((((((.((((((.....)))))))))))))))	chr9:123292187-123292441(-)$1	1	32	71	15.7230
((.((((((.(.(((.(((.....))).)))).))))))	chr8:145001399-145001674(-)$1	1	115	154	13.7439
(((((((((((((((..((....))))))))))))))))	chr18:77894632-77894891(+)$1	1	22	61	16.5203
((..(((((.(((((((((......))))))))).)).)	chr19:39440611-39440827(-)$1	1	9	48	16.8557
(((((((.(((((((.(((...))).))))))).)))))	chr14:31642714-31643003(-)$1	1	108	147	12.7641
(.(((.((...((((.(((.....))).))))...))))	chr19:45211133-45211386(-)$1	1	85	124	14.0170
((.(((((.((((((((((.....))).)))))))))))	chr15:41812789-41813075(-)$1	1	99	138	15.1345
((((((((((((((.((.(......).))))))))))))	chr2:32582245-32582472(+)$1	1	96	135	17.9900
(...((.(((.(.((((((......))))))).))).))	chr17:74288755-74289000(-)$1	1	85	124	12.6534
)).))(((.((((((((((......).))))))))))))	chr13:96705316-96705567(-)$1	1	74	113	16.5101
((((((((((.(((((((((...))))))))))))))..	chr12:56522132-56522384(+)$1	1	180	219	14.0043
((.((((((((((((((((.....))))....)))))))	chr2:220042895-220043178(+)$1	1	22	61	16.5443
(.(((..(((.((..(((......)))..)).)))))).	chr3:142242798-142243087(-)$1	1	112	151	13.5281
)).((((((((((((((........))))))))))))))	chr1:156621257-156621539(-)$1	1	214	253	13.7315
))..((.((.((((((((((...)))))))))).)).))	chr9:139137424-139137635(-)$1	1	124	163	13.9478
(.....(((((((.(..((.....))..)..))))))).	chr20:8782688-8782967(+)$1	1	20	59	12.9195
((.(((((.((((((((((...))))))))))....)))	chr1:43913837-43914092(+)$1	1	30	69	13.3581
((((...((((.(((((((.....))))))))))).)))	chr16:58550707-58550969(+)$1	1	105	144	12.7468
(((.((.((((((((((......)))))))))).)).))	chrX:109560905-109561214(-)$1	1	142	181	16.9883
((...((.((.(((((((((....))))))))).)).))	chr3:38178318-38178585(-)$1	1	85	124	13.5497
)).))))((.(((((((((......))))))))).))..	chr19:39440716-39440974(-)$1	1	156	195	14.0743
(((((((.(((.(.((((((...)))))).).)))))))	chr11:64948429-64948695(-)$1	1	83	122	11.3386
((((((.(((((((((((((....))).)))))))))).	chr3:4508694-4508948(-)$1	1	78	117	16.2797
).(((((((((((.(((((.....)).))).))))))))	chr2:27435153-27435436(+)$1	1	213	252	16.8279
..(.(.(.((((((.(((......))))))))).)..).	chr22:21212813-21213063(-)$1	1	9	48	13.4265
(((.(..(((((((((.((.....)).)))).))))).)	chr8:144642816-144643096(+)$1	1	76	115	12.5045

#PSSM
d : 0.17	c : 0.13	e : 0.11	= : 0.11	b : 0.11	f : 0.09	g : 0.05	[ : 0.03	a : 0.03	! : 0.03	F : 0.01	: : 0.01	h : 0.01	D : 0.01	
d : 0.17	= : 0.13	f : 0.11	b : 0.11	e : 0.09	c : 0.07	! : 0.07	g : 0.05	[ : 0.03	# : 0.01	" : 0.01	a : 0.01	$ : 0.01	D : 0.01	: : 0.01	
= : 0.15	e : 0.09	d : 0.09	! : 0.09	c : 0.07	f : 0.07	[ : 0.07	g : 0.05	: : 0.05	# : 0.03	a : 0.03	" : 0.03	] : 0.03	2 : 0.01	b : 0.01	$ : 0.01	
= : 0.19	e : 0.13	[ : 0.13	d : 0.13	# : 0.05	! : 0.05	f : 0.05	c : 0.05	" : 0.03	g : 0.03	2 : 0.01	a : 0.01	b : 0.01	: : 0.01	$ : 0.01	
= : 0.21	e : 0.13	c : 0.11	d : 0.11	b : 0.11	# : 0.05	f : 0.05	g : 0.03	" : 0.03	a : 0.03	] : 0.01	[ : 0.01	! : 0.01	$ : 0.01	
= : 0.21	e : 0.13	b : 0.11	c : 0.09	[ : 0.09	f : 0.07	d : 0.07	g : 0.05	# : 0.03	! : 0.03	a : 0.01	$ : 0.01	" : 0.01	
= : 0.23	e : 0.13	g : 0.09	[ : 0.09	f : 0.07	c : 0.07	b : 0.07	d : 0.07	" : 0.03	! : 0.03	# : 0.01	: : 0.01	a : 0.01	
= : 0.26	e : 0.17	b : 0.15	[ : 0.09	g : 0.07	f : 0.05	c : 0.05	d : 0.03	: : 0.01	! : 0.01	" : 0.01	# : 0.01	
= : 0.28	e : 0.13	b : 0.13	[ : 0.09	g : 0.09	f : 0.07	c : 0.05	" : 0.03	d : 0.03	! : 0.01	# : 0.01	
= : 0.36	e : 0.13	[ : 0.11	g : 0.11	f : 0.05	c : 0.05	b : 0.03	i : 0.03	a : 0.01	# : 0.01	" : 0.01	d : 0.01	
= : 0.36	[ : 0.17	g : 0.13	i : 0.09	e : 0.07	f : 0.03	! : 0.01	# : 0.01	a : 0.01	" : 0.01	d : 0.01	c : 0.01	
= : 0.36	i : 0.13	d : 0.11	g : 0.11	e : 0.09	[ : 0.07	c : 0.01	! : 0.01	a : 0.01	b : 0.01	f : 0.01	
= : 0.32	d : 0.13	i : 0.13	[ : 0.11	g : 0.11	c : 0.05	e : 0.03	b : 0.03	a : 0.01	f : 0.01	
= : 0.30	d : 0.13	i : 0.13	c : 0.07	g : 0.07	b : 0.05	f : 0.05	[ : 0.05	e : 0.03	a : 0.03	! : 0.01	
= : 0.26	d : 0.13	i : 0.13	c : 0.07	[ : 0.07	g : 0.07	e : 0.05	f : 0.05	b : 0.03	! : 0.03	" : 0.01	a : 0.01	
= : 0.23	[ : 0.17	i : 0.13	c : 0.11	! : 0.05	b : 0.05	g : 0.05	f : 0.05	e : 0.03	d : 0.03	r : 0.01	" : 0.01	
c : 0.32	= : 0.23	i : 0.13	b : 0.07	f : 0.05	g : 0.03	! : 0.03	r : 0.01	" : 0.01	e : 0.01	d : 0.01	[ : 0.01	
c : 0.32	= : 0.17	i : 0.13	b : 0.13	[ : 0.05	f : 0.05	r : 0.01	e : 0.01	d : 0.01	q : 0.01	g : 0.01	o : 0.01	
c : 0.26	= : 0.17	o : 0.11	b : 0.11	i : 0.09	a : 0.05	f : 0.05	r : 0.01	[ : 0.01	e : 0.01	d : 0.01	q : 0.01	g : 0.01	
n : 0.38	o : 0.34	= : 0.05	c : 0.03	l : 0.03	i : 0.03	r : 0.01	b : 0.01	m : 0.01	q : 0.01	f : 0.01	
n : 0.38	o : 0.34	m : 0.09	l : 0.09	r : 0.01	b : 0.01	c : 0.01	q : 0.01	
n : 0.38	o : 0.34	l : 0.13	m : 0.09	r : 0.01	q : 0.01	
n : 0.38	o : 0.34	m : 0.09	l : 0.09	r : 0.01	c : 0.01	q : 0.01	= : 0.01	
n : 0.38	o : 0.32	m : 0.07	= : 0.05	l : 0.03	r : 0.01	b : 0.01	c : 0.01	i : 0.01	q : 0.01	f : 0.01	
c : 0.24	o : 0.23	= : 0.19	b : 0.15	d : 0.03	f : 0.03	i : 0.03	e : 0.01	q : 0.01	g : 0.01	
c : 0.32	= : 0.23	b : 0.13	i : 0.09	a : 0.05	f : 0.05	d : 0.03	e : 0.01	] : 0.01	g : 0.01	
c : 0.32	= : 0.23	] : 0.13	i : 0.09	f : 0.05	d : 0.03	g : 0.03	4 : 0.01	3 : 0.01	e : 0.01	2 : 0.01	
= : 0.23	i : 0.13	d : 0.11	c : 0.11	] : 0.11	f : 0.07	b : 0.05	g : 0.05	2 : 0.03	4 : 0.01	3 : 0.01	e : 0.01	
= : 0.24	i : 0.13	d : 0.09	b : 0.09	g : 0.07	f : 0.07	3 : 0.05	c : 0.05	4 : 0.05	] : 0.03	e : 0.01	2 : 0.01	a : 0.01	
= : 0.30	i : 0.13	d : 0.11	g : 0.07	c : 0.05	b : 0.05	4 : 0.05	] : 0.05	f : 0.05	3 : 0.03	a : 0.01	2 : 0.01	
= : 0.32	i : 0.13	d : 0.11	g : 0.07	c : 0.05	] : 0.05	3 : 0.03	4 : 0.03	b : 0.03	a : 0.03	f : 0.03	e : 0.01	2 : 0.01	
= : 0.34	i : 0.13	e : 0.11	] : 0.09	g : 0.09	d : 0.05	c : 0.03	4 : 0.03	a : 0.03	b : 0.01	f : 0.01	
= : 0.34	e : 0.17	g : 0.13	i : 0.11	c : 0.07	d : 0.03	] : 0.03	b : 0.01	3 : 0.01	4 : 0.01	f : 0.01	
= : 0.30	e : 0.17	g : 0.11	i : 0.09	] : 0.09	c : 0.07	3 : 0.03	2 : 0.01	b : 0.01	f : 0.01	4 : 0.01	d : 0.01	
= : 0.24	e : 0.19	] : 0.15	g : 0.09	c : 0.05	b : 0.05	2 : 0.03	i : 0.03	3 : 0.03	f : 0.01	4 : 0.01	d : 0.01	a : 0.01	
= : 0.26	e : 0.19	b : 0.17	g : 0.09	c : 0.05	f : 0.03	i : 0.03	] : 0.03	2 : 0.03	3 : 0.01	d : 0.01	4 : 0.01	
= : 0.24	b : 0.13	e : 0.13	g : 0.09	] : 0.09	c : 0.07	4 : 0.05	f : 0.05	d : 0.03	a : 0.01	3 : 0.01	2 : 0.01	
= : 0.23	c : 0.11	g : 0.09	b : 0.09	4 : 0.07	] : 0.07	e : 0.07	f : 0.05	d : 0.03	2 : 0.03	3 : 0.03	A : 0.01	: : 0.01	a : 0.01	
= : 0.21	d : 0.09	c : 0.09	4 : 0.07	] : 0.07	b : 0.07	e : 0.07	f : 0.05	g : 0.05	2 : 0.05	3 : 0.03	} : 0.01	8 : 0.01	: : 0.01	a : 0.01	

#score	768.5451048440193
#seq	52
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_UTR_m2_run2.txt

#BEAR
b[ffffff&&&&&&&cccnnnnnccc999999999ffff	chr22:22890135-22890452(-)$1	317	71	110	34.4402
::ffffff####eeeeeooooooeeeee55555ffffff	chr4:174253048-174253320(-)$1	272	164	203	27.5346

#otherMatches

#Seq PSSM
UGUGAGUGAGGAAAACAUGUUCAGUGAGGAAAAAACAUU	chr22:22890135-22890452(-)$1	317	71	110	34.4402
AAGUGCAGCUCAAUACUAGCUUCAGUAUAAAAACUGUAC	chr4:174253048-174253320(-)$1	272	164	203	27.5346

#DB
(.((((((.......(((.....))).........))))	chr22:22890135-22890452(-)$1	1	71	110	34.4402
..((((((....(((((......))))).....))))))	chr4:174253048-174253320(-)$1	1	164	203	27.5346

#PSSM
b : 0.50	: : 0.50	
[ : 0.50	: : 0.50	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
& : 0.50	# : 0.50	
& : 0.50	# : 0.50	
& : 0.50	# : 0.50	
& : 0.50	# : 0.50	
& : 0.50	e : 0.50	
& : 0.50	e : 0.50	
& : 0.50	e : 0.50	
c : 0.50	e : 0.50	
c : 0.50	e : 0.50	
c : 0.50	o : 0.50	
n : 0.50	o : 0.50	
n : 0.50	o : 0.50	
n : 0.50	o : 0.50	
n : 0.50	o : 0.50	
n : 0.50	o : 0.50	
c : 0.50	e : 0.50	
c : 0.50	e : 0.50	
c : 0.50	e : 0.50	
9 : 0.50	e : 0.50	
9 : 0.50	e : 0.50	
9 : 0.50	5 : 0.50	
9 : 0.50	5 : 0.50	
9 : 0.50	5 : 0.50	
9 : 0.50	5 : 0.50	
9 : 0.50	5 : 0.50	
9 : 0.50	f : 0.50	
9 : 0.50	f : 0.50	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	

#score	61.97486460985
#seq	2
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_CDS_m3_run2.txt

#BEAR
ddddoooooodd	chrM:15617-15873(+)$1	256	93	105	8.8827
icccoooooocc	chrM:6473-6699(+)$1	226	107	119	6.7033
ddddmmmmdddd	chr11:65349570-65349830(+)$1	260	0	12	7.2602
ddddmmmmdddd	chrM:10783-10991(+)$1	208	25	37	7.2602
ddddoooooodd	chrM:7212-7446(+)$1	234	2	14	8.8827
ddddmmmmdddd	chrM:10756-10983(+)$1	227	52	64	7.2602
ddddmmmmdddd	chrM:10804-11048(+)$1	244	4	16	7.2602
ddddoooooodd	chrM:8440-8650(+)$1	210	92	104	8.8827
eeeeooooooee	chrM:14362-14583(-)$1	221	24	36	6.6524
ddddmmmmdddd	chrM:9799-10034(+)$1	235	29	41	7.2602
ddddnnnnnddd	chr9:139565245-139565504(+)$1	259	246	258	6.7296
ddddoooooodd	chrM:8450-8675(+)$1	225	82	94	8.8827
[ddddllldddd	chr11:47380022-47380303(-)$1	281	86	98	6.7614
eddddllldddd	chrM:10525-10740(+)$1	215	162	174	6.8701
ddddmmmmdddd	chrM:9490-9751(+)$1	261	56	68	7.2602
eeeeooooooee	chrM:9834-10051(+)$1	217	202	214	6.6524
ddddmmmmdddd	chrM:10747-10956(+)$1	209	61	73	7.2602
ddddoooooodd	chrM:13132-13377(+)$1	245	126	138	8.8827
ddddoooooodd	chrM:14159-14377(-)$1	218	41	53	8.8827
eddddllldddd	chrM:7804-8041(+)$1	237	202	214	6.8701
[cccoooooocc	chrM:14252-14494(-)$1	242	134	146	6.7392
eddddllldddd	chrM:10540-10763(+)$1	223	147	159	6.8701
ddddmmmmdddd	chrM:10710-10947(+)$1	237	98	110	7.2602
ddddmmmmdddd	chr4:174253120-174253335(-)$1	215	167	179	7.2602
ddddnnnnnddd	chr14:39649907-39650212(+)$1	305	226	238	6.7296
ddddlllddddd	chrM:7926-8134(+)$1	208	48	60	6.8893
[cccoooooocc	chrM:14203-14422(-)$1	219	62	74	6.7392
dcccoooooocc	chrM:9779-9999(+)$1	220	10	22	7.1143
ddddoooooodd	chr19:10407089-10407336(+)$1	247	147	159	8.8827
[cccoooooocc	chrM:14222-14444(-)$1	222	84	96	6.7392
ddddnnnnnddd	chr4:110745069-110745290(+)$1	221	25	37	6.7296
eeeeooooooee	chrM:7246-7454(+)$1	208	122	134	6.6524
ddddmmmmdddd	chrM:10792-11004(+)$1	212	16	28	7.2602
dcccoooooocc	chrM:9652-9867(+)$1	215	137	149	7.1143

#otherMatches

#Seq PSSM
CAAUCACUUUAU	chrM:15617-15873(+)$1	256	93	105	8.8827
GAGACCCCAUUC	chrM:6473-6699(+)$1	226	107	119	6.7033
AGGCCUGAGCCU	chr11:65349570-65349830(+)$1	260	0	12	7.2602
CUUUCCAAAAAG	chrM:10783-10991(+)$1	208	25	37	7.2602
CCGACGUUACUC	chrM:7212-7446(+)$1	234	2	14	8.8827
CUUUCCAAAAAG	chrM:10756-10983(+)$1	227	52	64	7.2602
CUUUCCAAAAAG	chrM:10804-11048(+)$1	244	4	16	7.2602
CGAAAAUCUGUU	chrM:8440-8650(+)$1	210	92	104	8.8827
GGUGUGUUAUUA	chrM:14362-14583(-)$1	221	24	36	6.6524
GUCAUUAUUGGC	chrM:9799-10034(+)$1	235	29	41	7.2602
GGGCAGGCAGUC	chr9:139565245-139565504(+)$1	259	246	258	6.7296
CGAAAAUCUGUU	chrM:8450-8675(+)$1	225	82	94	8.8827
ucugcuguguag	chr11:47380022-47380303(-)$1	281	86	98	6.7614
UGGGCCUAGCCC	chrM:10525-10740(+)$1	215	162	174	6.8701
GGGCACUGGCCC	chrM:9490-9751(+)$1	261	56	68	7.2602
UUGACAACAUUC	chrM:9834-10051(+)$1	217	202	214	6.6524
CUUUCCAAAAAG	chrM:10747-10956(+)$1	209	61	73	7.2602
AGUCAACUAGGA	chrM:13132-13377(+)$1	245	126	138	8.8827
GGUUGUGGUAAA	chrM:14159-14377(-)$1	218	41	53	8.8827
CGAGUAGUACUC	chrM:7804-8041(+)$1	237	202	214	6.8701
GGUGAAAGAGUA	chrM:14252-14494(-)$1	242	134	146	6.7392
UGGGCCUAGCCC	chrM:10540-10763(+)$1	223	147	159	6.8701
CUUUCCAAAAAG	chrM:10710-10947(+)$1	237	98	110	7.2602
GAAUGUGAAUUC	chr4:174253120-174253335(-)$1	215	167	179	7.2602
AACUAAUCGAGU	chr14:39649907-39650212(+)$1	305	226	238	6.7296
CAGGCGACCUGC	chrM:7926-8134(+)$1	208	48	60	6.8893
GGUGAAAGAGUA	chrM:14203-14422(-)$1	219	62	74	6.7392
UCAACAUUUUUU	chrM:9779-9999(+)$1	220	10	22	7.1143
cggccgAGUCGC	chr19:10407089-10407336(+)$1	247	147	159	8.8827
GGUGAAAGAGUA	chrM:14222-14444(-)$1	222	84	96	6.7392
GUUAUUAUUUAA	chr4:110745069-110745290(+)$1	221	25	37	6.7296
UCCAUAAACCUG	chrM:7246-7454(+)$1	208	122	134	6.6524
CUUUCCAAAAAG	chrM:10792-11004(+)$1	212	16	28	7.2602
UCAACAUUUUUU	chrM:9652-9867(+)$1	215	137	149	7.1143

#DB
((((......))	chrM:15617-15873(+)$1	1	93	105	8.8827
)(((......))	chrM:6473-6699(+)$1	1	107	119	6.7033
((((....))))	chr11:65349570-65349830(+)$1	1	0	12	7.2602
((((....))))	chrM:10783-10991(+)$1	1	25	37	7.2602
((((......))	chrM:7212-7446(+)$1	1	2	14	8.8827
((((....))))	chrM:10756-10983(+)$1	1	52	64	7.2602
((((....))))	chrM:10804-11048(+)$1	1	4	16	7.2602
((((......))	chrM:8440-8650(+)$1	1	92	104	8.8827
((((......))	chrM:14362-14583(-)$1	1	24	36	6.6524
((((....))))	chrM:9799-10034(+)$1	1	29	41	7.2602
((((.....)))	chr9:139565245-139565504(+)$1	1	246	258	6.7296
((((......))	chrM:8450-8675(+)$1	1	82	94	8.8827
.((((...))))	chr11:47380022-47380303(-)$1	1	86	98	6.7614
)((((...))))	chrM:10525-10740(+)$1	1	162	174	6.8701
((((....))))	chrM:9490-9751(+)$1	1	56	68	7.2602
((((......))	chrM:9834-10051(+)$1	1	202	214	6.6524
((((....))))	chrM:10747-10956(+)$1	1	61	73	7.2602
((((......))	chrM:13132-13377(+)$1	1	126	138	8.8827
((((......))	chrM:14159-14377(-)$1	1	41	53	8.8827
(((((...))))	chrM:7804-8041(+)$1	1	202	214	6.8701
.(((......))	chrM:14252-14494(-)$1	1	134	146	6.7392
)((((...))))	chrM:10540-10763(+)$1	1	147	159	6.8701
((((....))))	chrM:10710-10947(+)$1	1	98	110	7.2602
((((....))))	chr4:174253120-174253335(-)$1	1	167	179	7.2602
((((.....)))	chr14:39649907-39650212(+)$1	1	226	238	6.7296
((((...))))(	chrM:7926-8134(+)$1	1	48	60	6.8893
.(((......))	chrM:14203-14422(-)$1	1	62	74	6.7392
((((......))	chrM:9779-9999(+)$1	1	10	22	7.1143
((((......))	chr19:10407089-10407336(+)$1	1	147	159	8.8827
.(((......))	chrM:14222-14444(-)$1	1	84	96	6.7392
((((.....)))	chr4:110745069-110745290(+)$1	1	25	37	6.7296
((((......))	chrM:7246-7454(+)$1	1	122	134	6.6524
((((....))))	chrM:10792-11004(+)$1	1	16	28	7.2602
((((......))	chrM:9652-9867(+)$1	1	137	149	7.1143

#PSSM
d : 0.67	e : 0.17	[ : 0.11	i : 0.02	
d : 0.73	c : 0.17	e : 0.08	
d : 0.73	c : 0.17	e : 0.08	
d : 0.73	c : 0.17	e : 0.08	
o : 0.47	m : 0.29	d : 0.11	n : 0.08	l : 0.02	
o : 0.47	m : 0.29	l : 0.14	n : 0.08	
o : 0.47	m : 0.29	l : 0.14	n : 0.08	
o : 0.47	m : 0.29	l : 0.11	n : 0.08	d : 0.02	
o : 0.47	d : 0.44	n : 0.08	
d : 0.52	o : 0.47	
d : 0.73	c : 0.17	e : 0.08	
d : 0.73	c : 0.17	e : 0.08	

#score	250.33819651286177
#seq	34
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_transcript_m3_run2.txt

#BEAR
ggggggg[a!!bb[ddddccc[ccc[a+	chr5:109035341-109035583(-)$1	242	106	134	9.9965
#ccc!!eeeee[bb!!dddd[ggggggg	chr14:21865382-21865597(-)$1	215	56	84	11.4575
ggggggg"""a[ffffffccc[======	chr1:76255061-76255332(+)$1	271	97	125	12.4173
gggggg[a####bb!!a[==========	chr9:77414756-77414963(+)$1	207	59	87	18.4497
gggggg[a####bb!!a[==========	chr2:76672388-76672617(-)$1	229	86	114	18.4497
ggggggg$$$$$cccoooooocccgggg	chr1:173760910-173761127(+)$1	217	162	190	11.1026
[ggggggg####ggggggg"""ccc[ii	chr14:95999590-95999844(-)$1	254	12	40	13.5592
gggggg%%%%%%bb$$$$$iiiiiiiii	chr3:56106078-56106333(+)$1	255	58	86	12.4874
[ffffff$$$$$ccc[dddd"""cccnn	chr6:52860610-52860817(+)$1	207	15	43	11.7952
ffaeeeee"""ccc!!eeeee=======	chr3:52726660-52726926(+)$1	266	70	98	12.8985
gggggg[a####bb!!a[==========	chr4:7113986-7114227(-)$1	241	106	134	18.4497
[ggggggg"""ccc"""eeeee[a[ccc	chr12:6619578-6619808(+)$1	230	78	106	12.6899
$ccc!!eeeee[bb!!dddd[ggggggg	chr14:21865359-21865562(-)$1	203	21	49	11.2572
ggggggg!!a[dddd[a[a!!ffffff!	chr13:99857861-99858066(+)$1	205	57	85	10.7344
cc[bb[ccc"""bb$$$$$ccc"""hhh	chr20:2443535-2443762(-)$1	227	51	79	10.8728
ggggggg!!a[dddd[a[a!!ffffff!	chr13:99857866-99858117(+)$1	251	52	80	10.7344
::eeeee$$$$$==========!!ccc[	chr17:70659985-70660255(-)$1	270	183	211	10.2680
gggggg[a####bb!!a[==========	chr14:90178803-90179022(+)$1	219	56	84	18.4497
#ccc!!eeeee[bb!!dddd[ggggggg	chr14:21865362-21865582(-)$1	220	41	69	11.4575
gggggg[a####bb!!a[==========	chr5:6848384-6848633(-)$1	249	63	91	18.4497
gggggg[a####bb!!a[==========	chr14:90178775-90179003(+)$1	228	84	112	18.4497
!!a[ccc$$$$$bb"""dddd"""hhhh	chr6:86386957-86387187(-)$1	230	48	76	12.7648
[ffffff$$$$$ccc[dddd"""cccnn	chr6:52860584-52860808(+)$1	224	41	69	11.7952
gggggg[a####bb!!a[==========	chr9:77414741-77414948(+)$1	207	74	102	18.4497
gggggg[a####bb!!a[==========	chr5:6848433-6848662(-)$1	229	92	120	18.4497
ffffffff"""hhhhhhhh"""gggggg	chr8:56986294-56986542(-)$1	248	45	73	10.2458
ee[eeeee!!bbbb"""iiiiiiiiinn	chr11:75111331-75111633(+)$1	302	149	177	11.8552
gggggg[a####bb!!a[==========	chr9:77414748-77414952(+)$1	204	67	95	18.4497
ee[eeeee!!bbbb"""iiiiiiiiinn	chr11:75111433-75111678(+)$1	245	47	75	11.8552
#ccc!!eeeee[bb!!dddd[ggggggg	chr14:21865397-21865602(-)$1	205	61	89	11.4575
[ffffff$$$$$ccc[dddd"""cccnn	chr6:52860608-52860810(+)$1	202	17	45	11.7952
"eeeee[bb"""dddd[dddd=======	chr2:29136443-29136716(+)$1	273	14	42	11.3390
ffggggggg[a[bb[ccc[bb!!cccee	chr12:38557119-38557361(-)$1	242	24	52	10.8474
gggggg[a####bb!!a[==========	chr5:6848462-6848673(-)$1	211	103	131	18.4497
ffffffff####dddd!!ggggggg!!c	chr17:74557115-74557349(+)$1	234	73	101	11.9315
""ffffff####ccc!!iiiiiiiiiqq	chrX:118921214-118921466(-)$1	252	19	47	12.7951
#ccc!!eeeee[bb!!dddd[ggggggg	chr14:21865412-21865660(-)$1	248	119	147	11.4575
gggggg[a####bb!!a[==========	chr1:31316625-31316875(+)$1	250	49	77	18.4497
fccceeeee"""bb!!a[==========	chr4:4922641-4922843(-)$1	202	57	85	15.7908
FFFFFccc####bb[ffffff!!fffff	chr3:186502518-186502742(+)$1	224	114	142	10.3473

#otherMatches

#Seq PSSM
cggcugaucuggcuggcuaggcgggugu	chr5:109035341-109035583(-)$1	242	106	134	9.9965
UGCUAAUACUGAGCCACCAGGUAGGGCA	chr14:21865382-21865597(-)$1	215	56	84	11.4575
CAAGGUCAAUGAUGUAAUGGCAUGUAUU	chr1:76255061-76255332(+)$1	271	97	125	12.4173
ugagggcgaucuggcugugacaucuguc	chr9:77414756-77414963(+)$1	207	59	87	18.4497
ugagggcgaucuggcugcgacaucuguu	chr2:76672388-76672617(-)$1	229	86	114	18.4497
UGUUUUACAUAAUGCAUCUCAGUAUAAA	chr1:173760910-173761127(+)$1	217	162	190	11.1026
UAGUUUCUGGUCACUGUUGCCACGGUGA	chr14:95999590-95999844(-)$1	254	12	40	13.5592
ugagggcaaucuggcugcaacaucuguc	chr3:56106078-56106333(+)$1	255	58	86	12.4874
ccccugcuagaaccuccaaacaagcucu	chr6:52860610-52860817(+)$1	207	15	43	11.7952
AUGCUGUUACAGUUUUAGAUAAAUGUGA	chr3:52726660-52726926(+)$1	266	70	98	12.8985
ugagggcgaucuggcugcgacaucuguc	chr4:7113986-7114227(-)$1	241	106	134	18.4497
GACUUAGCUUGUGUUAUGGCCACUGAGA	chr12:6619578-6619808(+)$1	230	78	106	12.6899
UGCUAAUACUGAGCCACCAGGUAGGGCA	chr14:21865359-21865562(-)$1	203	21	49	11.2572
UCUGGUGCGCUGAUGAGAGAAGAUAGAA	chr13:99857861-99858066(+)$1	205	57	85	10.7344
GUGCUAAUUGAUAGAAGAUGCCUUAGCU	chr20:2443535-2443762(-)$1	227	51	79	10.8728
UCUGGUGCGCUGAUGAGAGAAGAUAGAA	chr13:99857866-99858117(+)$1	251	52	80	10.7344
accuccaaacaagcucucaagAAGAAAG	chr17:70659985-70660255(-)$1	270	183	211	10.2680
ugagggcgaucuggcugcgacaucuguc	chr14:90178803-90179022(+)$1	219	56	84	18.4497
UGCUAAUACUGAGCCACCAGGUAGGGCA	chr14:21865362-21865582(-)$1	220	41	69	11.4575
ugagggcgaucuggcugcgacaucuguc	chr5:6848384-6848633(-)$1	249	63	91	18.4497
ugagggcgaucuggcugcgacaucuguc	chr14:90178775-90179003(+)$1	228	84	112	18.4497
AAGUGGAGUUUUUCUGUUUGCUUAGAGA	chr6:86386957-86387187(-)$1	230	48	76	12.7648
ccccugcuagaaccuccaaacaagcucu	chr6:52860584-52860808(+)$1	224	41	69	11.7952
ugagggcgaucuggcugugacaucuguc	chr9:77414741-77414948(+)$1	207	74	102	18.4497
ugagggcgaucuggcugcgacaucuguc	chr5:6848433-6848662(-)$1	229	92	120	18.4497
AAAGCGUGGCUUAAAAUUGCUUUUACUG	chr8:56986294-56986542(-)$1	248	45	73	10.2458
UGCCCAGGUGGCCUACUCUGUGCUGCGU	chr11:75111331-75111633(+)$1	302	149	177	11.8552
ugagggcgaucuggcugugacaucuguc	chr9:77414748-77414952(+)$1	204	67	95	18.4497
UGCCCAGGUGGCCUACUCUGUGCUGCGU	chr11:75111433-75111678(+)$1	245	47	75	11.8552
UGCUAAUACUGAGCCACCAGGUAGGGCA	chr14:21865397-21865602(-)$1	205	61	89	11.4575
ccccugcuagaaccuccaaacaagcucu	chr6:52860608-52860810(+)$1	202	17	45	11.7952
UUGACUGUGGAGAUUUAGUAUUAUAUUU	chr2:29136443-29136716(+)$1	273	14	42	11.3390
AUCCAGGCGCCACUGCCAGCgccuacag	chr12:38557119-38557361(-)$1	242	24	52	10.8474
ugagggcgaucuggcugcgacaucuguc	chr5:6848462-6848673(-)$1	211	103	131	18.4497
AGCUGAGUCCAUGAUGAUUUCAAGUUAU	chr17:74557115-74557349(+)$1	234	73	101	11.9315
AAAGCAGGUUGCAAUUACAGUGCUUCAU	chrX:118921214-118921466(-)$1	252	19	47	12.7951
UGCUAAUACUGAGCCACCAGGUAGGGCA	chr14:21865412-21865660(-)$1	248	119	147	11.4575
ugagggugaucuggcugugacaucuguc	chr1:31316625-31316875(+)$1	250	49	77	18.4497
ugagggugaucuggcugugacaucuguc	chr4:4922641-4922843(-)$1	202	57	85	15.7908
AAUACUCAUUGCUGAUCACUUGAUUAUU	chr3:186502518-186502742(+)$1	224	114	142	10.3473

#DB
(((((((.(..((.(((((((.(((.(.	chr5:109035341-109035583(-)$1	1	106	134	9.9965
.(((..(((((.((..((((.(((((((	chr14:21865382-21865597(-)$1	1	56	84	11.4575
(((((((...(.(((((((((.((((((	chr1:76255061-76255332(+)$1	1	97	125	12.4173
((((((.(....((..(.((((((((((	chr9:77414756-77414963(+)$1	1	59	87	18.4497
((((((.(....((..(.((((((((((	chr2:76672388-76672617(-)$1	1	86	114	18.4497
(((((((.....(((......)))))))	chr1:173760910-173761127(+)$1	1	162	190	11.1026
.(((((((....(((((((...(((.((	chr14:95999590-95999844(-)$1	1	12	40	13.5592
((((((......((.....(((((((((	chr3:56106078-56106333(+)$1	1	58	86	12.4874
.((((((.....(((.((((...(((..	chr6:52860610-52860817(+)$1	1	15	43	11.7952
((((((((...(((..((((((((((((	chr3:52726660-52726926(+)$1	1	70	98	12.8985
((((((.(....((..(.((((((((((	chr4:7113986-7114227(-)$1	1	106	134	18.4497
.(((((((...(((...(((((.(.(((	chr12:6619578-6619808(+)$1	1	78	106	12.6899
.(((..(((((.((..((((.(((((((	chr14:21865359-21865562(-)$1	1	21	49	11.2572
(((((((..(.((((.(.(..((((((.	chr13:99857861-99858066(+)$1	1	57	85	10.7344
((.((.(((...((.....(((...(((	chr20:2443535-2443762(-)$1	1	51	79	10.8728
(((((((..(.((((.(.(..((((((.	chr13:99857866-99858117(+)$1	1	52	80	10.7344
..(((((.....((((((((((..(((.	chr17:70659985-70660255(-)$1	1	183	211	10.2680
((((((.(....((..(.((((((((((	chr14:90178803-90179022(+)$1	1	56	84	18.4497
.(((..(((((.((..((((.(((((((	chr14:21865362-21865582(-)$1	1	41	69	11.4575
((((((.(....((..(.((((((((((	chr5:6848384-6848633(-)$1	1	63	91	18.4497
((((((.(....((..(.((((((((((	chr14:90178775-90179003(+)$1	1	84	112	18.4497
..(.(((.....((...((((...((((	chr6:86386957-86387187(-)$1	1	48	76	12.7648
.((((((.....(((.((((...(((..	chr6:52860584-52860808(+)$1	1	41	69	11.7952
((((((.(....((..(.((((((((((	chr9:77414741-77414948(+)$1	1	74	102	18.4497
((((((.(....((..(.((((((((((	chr5:6848433-6848662(-)$1	1	92	120	18.4497
))((((((...((((((((...((((((	chr8:56986294-56986542(-)$1	1	45	73	10.2458
((.(((((..((((...(((((((((..	chr11:75111331-75111633(+)$1	1	149	177	11.8552
((((((.(....((..(.((((((((((	chr9:77414748-77414952(+)$1	1	67	95	18.4497
((.(((((..((((...(((((((((..	chr11:75111433-75111678(+)$1	1	47	75	11.8552
.(((..(((((.((..((((.(((((((	chr14:21865397-21865602(-)$1	1	61	89	11.4575
.((((((.....(((.((((...(((..	chr6:52860608-52860810(+)$1	1	17	45	11.7952
.(((((.((...((((.(((((((((((	chr2:29136443-29136716(+)$1	1	14	42	11.3390
))(((((((.(.((.(((.((..(((((	chr12:38557119-38557361(-)$1	1	24	52	10.8474
((((((.(....((..(.((((((((((	chr5:6848462-6848673(-)$1	1	103	131	18.4497
((((((((....((((..(((((((..(	chr17:74557115-74557349(+)$1	1	73	101	11.9315
..((((((....(((..(((((((((..	chrX:118921214-118921466(-)$1	1	19	47	12.7951
.(((..(((((.((..((((.(((((((	chr14:21865412-21865660(-)$1	1	119	147	11.4575
((((((.(....((..(.((((((((((	chr1:31316625-31316875(+)$1	1	49	77	18.4497
(((((((((...((..(.((((((((((	chr4:4922641-4922843(-)$1	1	57	85	15.7908
)))))(((....((.((((((..(((((	chr3:186502518-186502742(+)$1	1	114	142	10.3473

#PSSM
g : 0.42	[ : 0.12	f : 0.12	# : 0.10	e : 0.05	" : 0.05	$ : 0.02	c : 0.02	: : 0.02	! : 0.02	F : 0.02	
g : 0.47	c : 0.17	f : 0.17	e : 0.07	: : 0.02	! : 0.02	" : 0.02	F : 0.02	
g : 0.50	c : 0.15	f : 0.15	[ : 0.07	a : 0.05	e : 0.05	F : 0.02	
g : 0.50	c : 0.15	f : 0.15	e : 0.12	b : 0.02	[ : 0.02	F : 0.02	
g : 0.50	f : 0.15	e : 0.15	! : 0.12	b : 0.02	c : 0.02	F : 0.02	
g : 0.50	f : 0.15	e : 0.15	! : 0.12	c : 0.05	[ : 0.02	
[ : 0.30	e : 0.24	g : 0.19	f : 0.15	c : 0.07	% : 0.02	
a : 0.27	e : 0.22	$ : 0.15	g : 0.07	f : 0.07	! : 0.05	c : 0.05	[ : 0.02	" : 0.02	% : 0.02	b : 0.02	
# : 0.37	e : 0.15	$ : 0.15	" : 0.10	! : 0.10	a : 0.02	% : 0.02	c : 0.02	b : 0.02	g : 0.02	
# : 0.37	" : 0.17	$ : 0.15	e : 0.12	! : 0.07	a : 0.05	% : 0.02	[ : 0.02	
# : 0.37	$ : 0.15	" : 0.15	e : 0.12	a : 0.05	[ : 0.05	b : 0.05	! : 0.02	% : 0.02	
# : 0.37	[ : 0.17	$ : 0.15	b : 0.07	" : 0.07	c : 0.05	d : 0.05	% : 0.02	h : 0.02	
b : 0.62	c : 0.17	d : 0.10	f : 0.02	g : 0.02	= : 0.02	h : 0.02	
b : 0.60	c : 0.17	d : 0.10	[ : 0.02	f : 0.02	g : 0.02	= : 0.02	h : 0.02	
! : 0.45	d : 0.12	c : 0.12	" : 0.10	$ : 0.05	[ : 0.05	f : 0.02	g : 0.02	= : 0.02	h : 0.02	
! : 0.47	[ : 0.12	" : 0.10	d : 0.07	f : 0.05	$ : 0.05	o : 0.02	g : 0.02	= : 0.02	h : 0.02	c : 0.02	
a : 0.35	d : 0.22	" : 0.10	f : 0.05	$ : 0.05	! : 0.05	o : 0.02	g : 0.02	e : 0.02	= : 0.02	h : 0.02	[ : 0.02	c : 0.02	
[ : 0.35	d : 0.27	i : 0.07	f : 0.05	$ : 0.05	e : 0.05	o : 0.02	g : 0.02	= : 0.02	h : 0.02	c : 0.02	! : 0.02	
= : 0.32	d : 0.24	i : 0.07	c : 0.05	g : 0.05	$ : 0.05	e : 0.05	a : 0.05	o : 0.02	h : 0.02	[ : 0.02	f : 0.02	
= : 0.32	d : 0.24	i : 0.10	c : 0.07	" : 0.05	e : 0.05	! : 0.05	o : 0.02	b : 0.02	g : 0.02	f : 0.02	
= : 0.32	[ : 0.12	" : 0.12	i : 0.10	c : 0.07	e : 0.05	! : 0.05	d : 0.05	o : 0.02	b : 0.02	g : 0.02	f : 0.02	
= : 0.37	g : 0.15	" : 0.15	i : 0.10	[ : 0.05	c : 0.05	f : 0.05	! : 0.05	e : 0.02	
= : 0.37	g : 0.17	" : 0.12	i : 0.10	c : 0.07	! : 0.07	f : 0.05	[ : 0.02	
= : 0.37	c : 0.17	g : 0.17	i : 0.10	f : 0.07	" : 0.05	a : 0.02	! : 0.02	
= : 0.37	g : 0.19	c : 0.17	i : 0.10	f : 0.07	[ : 0.02	" : 0.02	h : 0.02	
= : 0.37	g : 0.17	c : 0.15	i : 0.10	f : 0.07	[ : 0.05	h : 0.05	! : 0.02	
= : 0.37	g : 0.17	n : 0.12	f : 0.07	i : 0.05	c : 0.05	h : 0.05	a : 0.02	e : 0.02	! : 0.02	q : 0.02	
= : 0.37	g : 0.17	n : 0.12	i : 0.05	c : 0.05	! : 0.05	h : 0.05	+ : 0.02	[ : 0.02	e : 0.02	q : 0.02	f : 0.02	

#score	542.9550044257327
#seq	40
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_transcript_m3_run2.txt

#BEAR
=####ddddqqqqqqqqdddd===	chr5:145651084-145651338(+)$1	254	10	34	17.8435
ggggggg[aqqqqqqqqa]ggggg	chr2:232577092-232577297(+)$1	205	10	34	15.5244
fff!!ddddqqqqqqqqddddfff	chr10:93711162-93711423(+)$1	261	80	104	17.1788
d[bb[ddddqqqqqqqqddddbb]	chr10:95276852-95277107(+)$1	255	219	243	16.3143
eeee[ddddqqqqqqqqdddd]ee	chr12:10856545-10856848(-)$1	303	132	156	16.9376
ddd"""cccqqqqqqqqccc4444	chr19:55609019-55609322(-)$1	303	183	207	16.6803
ff!!a[cccqqqqqqqqccc]a22	chr8:145651918-145652130(-)$1	212	99	123	16.2958
ccc[bb!!aqqqqqqqqa22bb]c	chr1:156025090-156025323(+)$1	233	89	113	14.4333
ffffff!!aqqqqqqqqa22ffff	chr12:124885014-124885320(-)$1	306	80	104	14.1028
f[eeeee[aqqqqqqqqa]eeeee	chr1:2171657-2171916(+)$1	259	188	212	14.7600
GGGGGddddqqqqqqqqddddccc	chr6:168347438-168347678(+)$1	240	116	140	14.2660
f[bb[ddddqqqqqqqqddddbb]	chr1:150321530-150321793(+)$1	263	95	119	16.4017
[bb[eeeeeqqqqqqqqeeeee]b	chr19:48257950-48258215(+)$1	265	187	211	14.5010
fff####bbqqqqqqqqbb333ff	chr2:71661815-71662105(+)$1	290	46	70	15.1382
dddd[ddddqqqqqqqqdddd]dd	chr1:180957252-180957514(-)$1	262	60	84	16.5038
ccc!!bb[aqqqqqqqqa]bb333	chr4:1902372-1902674(+)$1	302	189	213	16.1973
d[dddd!!aqqqqqqqqa22dddd	chr1:43898303-43898572(+)$1	269	173	197	14.3796
eeee[ddddqqqqqqqqdddd]ee	chr21:33757755-33758020(-)$1	265	29	53	16.9376
bb[a!!cccqqqqqqqqccc22a]	chr19:10668172-10668409(-)$1	237	94	118	16.0563
cc"""ddddqqqqqqqqdddd22c	chr4:57797527-57797815(+)$1	288	193	217	18.1315
gggg[ddddqqqqqqqqddddggg	chr5:159463603-159463866(+)$1	263	96	120	17.3145
f!!bb[cccqqqqqqqqcccbb33	chr19:10406443-10406708(+)$1	265	90	114	15.4885
d[ccc[cccqqqqqqqqcccccc]	chr2:58459088-58459347(-)$1	259	39	63	15.6116
GGgggggggqqqqqqqqggggggg	chr15:59041695-59041954(-)$1	259	208	232	14.2383
eee!!ddddqqqqqqqqdddd22e	chr1:39751175-39751430(+)$1	255	132	156	17.7381
c[cccddddqqqqqqqqdddd22c	chr12:49230659-49230915(-)$1	256	6	30	17.2888
eeee!!cccqqqqqqqqccc]eee	chrX:48844098-48844351(-)$1	253	99	123	15.6190
d####ddddqqqqqqqqdddd]dd	chr1:19419212-19419462(-)$1	250	24	48	17.4753
####eeeeeqqqqqqqqeeeee66	chr5:137501429-137501717(-)$1	288	12	36	14.3100
%%%%%ddddqqqqqqqqdddd666	chr2:102485983-102486238(+)$1	255	119	143	13.5515
ccc!!ddddqqqqqqqqdddd22c	chr1:10689814-10690075(+)$1	261	15	39	18.0490
!!gggggggqqqqqqqqggggggg	chr1:25815625-25815866(+)$1	241	162	186	15.3411
ccc"""cccqqqqqqqqccc4444	chr2:48025788-48026122(+)$1	334	13	37	17.1091
:::bbddddqqqqqqqqdddd]bb	chr21:15889110-15889389(-)$1	279	38	62	13.3805
eeee[bb[aqqqqqqqqa]bb]ee	chr9:100086006-100086286(+)$1	280	164	188	14.5682
e####ddddqqqqqqqqdddd333	chr22:18379386-18379678(-)$1	292	229	253	18.5555
[bb"""cccqqqqqqqqccc333b	chr16:84733523-84733812(+)$1	289	148	172	16.9214
ggggg[cccqqqqqqqqccc]ggg	chr3:14211865-14212092(-)$1	227	142	166	15.9658
ccc[a[cccqqqqqqqqccc]a]c	chr20:2643996-2644253(-)$1	257	22	46	16.2478
cc"""bb[aqqqqqqqqa]bb333	chr17:46133807-46134057(+)$1	250	106	130	16.2799
iiiiiiiiiqqqqqqqqiiiiiii	chr3:43473034-43473407(-)$1	373	269	293	15.3052
ccc!!ddddqqqqqqqqdddd]cc	chr5:132097125-132097393(-)$1	268	118	142	17.8012
ffff!!cccqqqqqqqqccc4444	chr3:184044954-184045223(+)$1	269	54	78	16.6110
!!gggggggqqqqqqqqggggggg	chr12:58111926-58112264(+)$1	338	11	35	15.3411
dd"""ddddqqqqqqqqdddd]dd	chr17:73488928-73489170(+)$1	242	182	206	17.3420
gggggg!!aqqqqqqqqa22gggg	chr5:140054550-140054820(-)$1	270	10	34	15.2708
ggg!!ddddqqqqqqqqdddd22g	chr10:46241945-46242198(+)$1	253	32	56	18.1481
Dbb!!ddddqqqqqqqqdddd]bb	chr17:1576644-1576953(-)$1	309	284	308	16.0162
ffff"""bbqqqqqqqqbb333ff	chr11:93469202-93469425(-)$1	223	144	168	14.8613
[ddddddddqqqqqqqqdddd22d	chr19:14501693-14501991(+)$1	298	54	78	16.4248
fffffddddqqqqqqqqdddd333	chr5:33461288-33461500(+)$1	212	157	181	17.3960
eeee"""bbqqqqqqqqbbeeeee	chr7:128452792-128453046(+)$1	254	143	167	14.0840
fff!!ddddqqqqqqqqddddfff	chr17:15975378-15975625(-)$1	247	115	139	17.1788
eeeeeddddqqqqqqqqdddd333	chr12:123060038-123060298(+)$1	260	142	166	17.3025
g[bb[ddddqqqqqqqqdddd22b	chr12:133357287-133357523(-)$1	236	121	145	17.2639
++gggggggqqqqqqqqggggggg	chr16:47347539-47347832(-)$1	293	40	64	13.9386
iiiiiiiiiqqqqqqqqiiiiiii	chr22:20891310-20891542(+)$1	232	15	39	15.3052
[bb!!ddddqqqqqqqqdddd22b	chr17:76186948-76187167(+)$1	219	164	188	17.5671

#otherMatches

#Seq PSSM
CUCAAGGUCGAGGAAGAGGCCGAG	chr5:145651084-145651338(+)$1	254	10	34	17.8435
AGCCACAGUAGGAGGGAAGUGUGG	chr2:232577092-232577297(+)$1	205	10	34	15.5244
GGAAUGAGUACUGAAGAACUUUUC	chr10:93711162-93711423(+)$1	261	80	104	17.1788
gaccacuagagaacuggcuaggga	chr10:95276852-95277107(+)$1	255	219	243	16.3143
UCCCAGAGGGAGCACAACUUCAGG	chr12:10856545-10856848(-)$1	303	132	156	16.9376
gacgugaguacuacagcacuaaga	chr19:55609019-55609322(-)$1	303	183	207	16.6803
CAAUCCCAGGGGAGAGGCUGUGUG	chr8:145651918-145652130(-)$1	212	99	123	16.2958
UGAAGACAAUCUCAAAUUCAUCCU	chr1:156025090-156025323(+)$1	233	89	113	14.4333
UCUCCCCUCUCUGGCCUGUAGGGA	chr12:124885014-124885320(-)$1	306	80	104	14.1028
UGUCUGGGACUCUGAACUGCCAGA	chr1:2171657-2171916(+)$1	259	188	212	14.7600
AUCACCGUUCCAGCCCCAACGUAG	chr6:168347438-168347678(+)$1	240	116	140	14.2660
CUUCCAGAUGAUGAGGAGUCUGAU	chr1:150321530-150321793(+)$1	263	95	119	16.4017
UGCACAGGCUGGUGAGCGCCUGGG	chr19:48257950-48258215(+)$1	265	187	211	14.5010
CUUUUAACAGAAAUUCAUGGCCAA	chr2:71661815-71662105(+)$1	290	46	70	15.1382
UUGGAGCUGGUCUCUGGCAGCAUC	chr1:180957252-180957514(-)$1	262	60	84	16.5038
GUCAUGCAGAAGUUUAACGGCCAC	chr4:1902372-1902674(+)$1	302	189	213	16.1973
UGGGGGGACGGGGUGAAGGACUCU	chr1:43898303-43898572(+)$1	269	173	197	14.3796
UUGGAAGCGUUUGUGUCUGCUGCC	chr21:33757755-33758020(-)$1	265	29	53	16.9376
GGACUACGAGGACAUCAUCGACGA	chr19:10668172-10668409(-)$1	237	94	118	16.0563
AGAAGAGGCAGAUGAGAGCCUACC	chr4:57797527-57797815(+)$1	288	193	217	18.1315
UAUAUAGAAGCUGAAAGUUCUUAU	chr5:159463603-159463866(+)$1	263	96	120	17.3145
AAAGGACUUUAAAACUUGGGCUGG	chr19:10406443-10406708(+)$1	265	90	114	15.4885
AACUUCUCAGCAUUAAGUGAAAGA	chr2:58459088-58459347(-)$1	259	39	63	15.6116
gcggcagcggAAGAUGGUGUUGCU	chr15:59041695-59041954(-)$1	259	208	232	14.2383
ACAAUGUGAGUCAGAUGUCAUUAU	chr1:39751175-39751430(+)$1	255	132	156	17.7381
GAAGAACUGUUUCAUACUAGUAGU	chr12:49230659-49230915(-)$1	256	6	30	17.2888
GGGCUUUUGGCUGAGAACAAUGCC	chrX:48844098-48844351(-)$1	253	99	123	15.6190
CUAAUAAGCCUUCCUUUGCUUUGC	chr1:19419212-19419462(-)$1	250	24	48	17.4753
AUCAAUUCUAUCAAAGAAGAGUGU	chr5:137501429-137501717(-)$1	288	12	36	14.3100
AAGAGCUUCGAGCAGUGGAAGAUG	chr2:102485983-102486238(+)$1	255	119	143	13.5515
GCCAGGUGCGGAUGGAGGUGCAAG	chr1:10689814-10690075(+)$1	261	15	39	18.0490
AGGGGGGAACAAAAGACUUCCCUU	chr1:25815625-25815866(+)$1	241	162	186	15.3411
GUGAAGAGGAAGUACAGCCUAAGA	chr2:48025788-48026122(+)$1	334	13	37	17.1091
AGAUCCCACAAAUGGAAGUGGAGA	chr21:15889110-15889389(-)$1	279	38	62	13.3805
CUGGAGCUCUUGGACGUGCGUGCU	chr9:100086006-100086286(+)$1	280	164	188	14.5682
AAUAAUUAGGAGUGAAUCUGGGCA	chr22:18379386-18379678(-)$1	292	229	253	18.5555
CGGAGUCCCAAUGAAACGGGCAGC	chr16:84733523-84733812(+)$1	289	148	172	16.9214
GAAGAGGUUGAAGGUGAAACAUCU	chr3:14211865-14212092(-)$1	227	142	166	15.9658
UGGGAACCUGUCUCUGAAGGCUGC	chr20:2643996-2644253(-)$1	257	22	46	16.2478
GGAACCUGCUAGUGGAUGGAGAGA	chr17:46133807-46134057(+)$1	250	106	130	16.2799
GUAGGUGACAAGACUAAGUUACCU	chr3:43473034-43473407(-)$1	373	269	293	15.3052
GUUGAUCCGGGUGAACAUGGAAGA	chr5:132097125-132097393(-)$1	268	118	142	17.8012
GCUUGAGCCGAGAACGAGGCGAGA	chr3:184044954-184045223(+)$1	269	54	78	16.6110
AAUAUAGGCCAAGAGCAGCCUGUG	chr12:58111926-58112264(+)$1	338	11	35	15.3411
CUCUCCUGUGUCACCAAGCGGCGG	chr17:73488928-73489170(+)$1	242	182	206	17.3420
GUUGGGCCUGGUCUCAAAAUCCCG	chr5:140054550-140054820(-)$1	270	10	34	15.2708
AGACCUGCAAUCAUUUCUGUGCUU	chr10:46241945-46242198(+)$1	253	32	56	18.1481
CUGGAACCUGCAGAAUGAGGUACA	chr17:1576644-1576953(-)$1	309	284	308	16.0162
CAUAGAAAUGAAUAAAGAUAAAUG	chr11:93469202-93469425(-)$1	223	144	168	14.8613
GUGCAACACCGUCGAAAGUGUCAU	chr19:14501693-14501991(+)$1	298	54	78	16.4248
GCUUGUUCUGAGAUGUAAGAAAGC	chr5:33461288-33461500(+)$1	212	157	181	17.3960
AUGGAAUGCCUUGAAAAGCCCAUG	chr7:128452792-128453046(+)$1	254	143	167	14.0840
CCUCAUUCUGACCUCAAAGAAAGG	chr17:15975378-15975625(-)$1	247	115	139	17.1788
UGGACCAUCCCAAGUAAGAUGACU	chr12:123060038-123060298(+)$1	260	142	166	17.3025
GAACAGCCUCAAGGAGCAGGUGCG	chr12:133357287-133357523(-)$1	236	121	145	17.2639
CAUACAAGAACACUUUAUUUUGUG	chr16:47347539-47347832(-)$1	293	40	64	13.9386
GCAGGGCCUGUUGGCCAGGGCCCU	chr22:20891310-20891542(+)$1	232	15	39	15.3052
GAGGACCUACUCACAGAUAGGAAU	chr17:76186948-76187167(+)$1	219	164	188	17.5671

#DB
(....((((........)))))))	chr5:145651084-145651338(+)$1	1	10	34	17.8435
(((((((.(........).)))))	chr2:232577092-232577297(+)$1	1	10	34	15.5244
(((..((((........)))))))	chr10:93711162-93711423(+)$1	1	80	104	17.1788
(.((.((((........)))))).	chr10:95276852-95277107(+)$1	1	219	243	16.3143
((((.((((........)))).))	chr12:10856545-10856848(-)$1	1	132	156	16.9376
(((...(((........)))....	chr19:55609019-55609322(-)$1	1	183	207	16.6803
((..(.(((........))).)..	chr8:145651918-145652130(-)$1	1	99	123	16.2958
(((.((..(........)..)).)	chr1:156025090-156025323(+)$1	1	89	113	14.4333
((((((..(........)..))))	chr12:124885014-124885320(-)$1	1	80	104	14.1028
(.(((((.(........).)))))	chr1:2171657-2171916(+)$1	1	188	212	14.7600
(((((((((........))))(((	chr6:168347438-168347678(+)$1	1	116	140	14.2660
(.((.((((........)))))).	chr1:150321530-150321793(+)$1	1	95	119	16.4017
.((.(((((........))))).)	chr19:48257950-48258215(+)$1	1	187	211	14.5010
(((....((........))...))	chr2:71661815-71662105(+)$1	1	46	70	15.1382
((((.((((........)))).))	chr1:180957252-180957514(-)$1	1	60	84	16.5038
(((..((.(........).))...	chr4:1902372-1902674(+)$1	1	189	213	16.1973
(.((((..(........)..))))	chr1:43898303-43898572(+)$1	1	173	197	14.3796
((((.((((........)))).))	chr21:33757755-33758020(-)$1	1	29	53	16.9376
((.(..(((........)))..).	chr19:10668172-10668409(-)$1	1	94	118	16.0563
((...((((........))))..)	chr4:57797527-57797815(+)$1	1	193	217	18.1315
((((.((((........)))))))	chr5:159463603-159463866(+)$1	1	96	120	17.3145
(..((.(((........)))))..	chr19:10406443-10406708(+)$1	1	90	114	15.4885
(.(((.(((........)))))).	chr2:58459088-58459347(-)$1	1	39	63	15.6116
))(((((((........)))))))	chr15:59041695-59041954(-)$1	1	208	232	14.2383
(((..((((........))))..)	chr1:39751175-39751430(+)$1	1	132	156	17.7381
(.(((((((........))))..)	chr12:49230659-49230915(-)$1	1	6	30	17.2888
((((..(((........))).)))	chrX:48844098-48844351(-)$1	1	99	123	15.6190
(....((((........)))).))	chr1:19419212-19419462(-)$1	1	24	48	17.4753
....(((((........)))))..	chr5:137501429-137501717(-)$1	1	12	36	14.3100
.....((((........))))...	chr2:102485983-102486238(+)$1	1	119	143	13.5515
(((..((((........))))..)	chr1:10689814-10690075(+)$1	1	15	39	18.0490
..(((((((........)))))))	chr1:25815625-25815866(+)$1	1	162	186	15.3411
(((...(((........)))....	chr2:48025788-48026122(+)$1	1	13	37	17.1091
...((((((........)))).))	chr21:15889110-15889389(-)$1	1	38	62	13.3805
((((.((.(........).)).))	chr9:100086006-100086286(+)$1	1	164	188	14.5682
(....((((........))))...	chr22:18379386-18379678(-)$1	1	229	253	18.5555
.((...(((........)))...)	chr16:84733523-84733812(+)$1	1	148	172	16.9214
(((((.(((........))).)))	chr3:14211865-14212092(-)$1	1	142	166	15.9658
(((.(.(((........))).).)	chr20:2643996-2644253(-)$1	1	22	46	16.2478
((...((.(........).))...	chr17:46133807-46134057(+)$1	1	106	130	16.2799
(((((((((........)))))))	chr3:43473034-43473407(-)$1	1	269	293	15.3052
(((..((((........)))).))	chr5:132097125-132097393(-)$1	1	118	142	17.8012
((((..(((........)))....	chr3:184044954-184045223(+)$1	1	54	78	16.6110
..(((((((........)))))))	chr12:58111926-58112264(+)$1	1	11	35	15.3411
((...((((........)))).))	chr17:73488928-73489170(+)$1	1	182	206	17.3420
((((((..(........)..))))	chr5:140054550-140054820(-)$1	1	10	34	15.2708
(((..((((........))))..)	chr10:46241945-46242198(+)$1	1	32	56	18.1481
)((..((((........)))).))	chr17:1576644-1576953(-)$1	1	284	308	16.0162
((((...((........))...))	chr11:93469202-93469425(-)$1	1	144	168	14.8613
.((((((((........))))..)	chr19:14501693-14501991(+)$1	1	54	78	16.4248
(((((((((........))))...	chr5:33461288-33461500(+)$1	1	157	181	17.3960
((((...((........)))))))	chr7:128452792-128453046(+)$1	1	143	167	14.0840
(((..((((........)))))))	chr17:15975378-15975625(-)$1	1	115	139	17.1788
(((((((((........))))...	chr12:123060038-123060298(+)$1	1	142	166	17.3025
(.((.((((........))))..)	chr12:133357287-133357523(-)$1	1	121	145	17.2639
..(((((((........)))))))	chr16:47347539-47347832(-)$1	1	40	64	13.9386
(((((((((........)))))))	chr22:20891310-20891542(+)$1	1	15	39	15.3052
.((..((((........))))..)	chr17:76186948-76187167(+)$1	1	164	188	17.5671

#PSSM
f : 0.18	c : 0.15	e : 0.13	d : 0.12	g : 0.10	[ : 0.06	G : 0.03	! : 0.03	i : 0.03	= : 0.01	b : 0.01	# : 0.01	% : 0.01	: : 0.01	D : 0.01	+ : 0.01	
f : 0.13	c : 0.13	[ : 0.12	e : 0.12	g : 0.08	b : 0.08	# : 0.06	d : 0.06	! : 0.05	G : 0.03	i : 0.03	% : 0.01	: : 0.01	+ : 0.01	
g : 0.15	e : 0.13	c : 0.13	f : 0.12	b : 0.12	# : 0.06	d : 0.06	" : 0.05	! : 0.03	i : 0.03	G : 0.01	[ : 0.01	% : 0.01	: : 0.01	
! : 0.17	g : 0.13	e : 0.12	" : 0.10	# : 0.08	b : 0.08	f : 0.06	[ : 0.05	d : 0.05	c : 0.03	i : 0.03	G : 0.01	a : 0.01	% : 0.01	
! : 0.20	[ : 0.13	" : 0.13	g : 0.12	# : 0.06	e : 0.06	b : 0.05	a : 0.03	f : 0.03	d : 0.03	c : 0.03	i : 0.03	G : 0.01	% : 0.01	
d : 0.48	g : 0.10	" : 0.08	[ : 0.08	b : 0.06	e : 0.05	! : 0.05	i : 0.03	f : 0.01	# : 0.01	
d : 0.46	c : 0.18	g : 0.08	! : 0.06	e : 0.05	b : 0.05	i : 0.03	" : 0.03	# : 0.01	
d : 0.46	c : 0.18	[ : 0.08	! : 0.06	g : 0.06	b : 0.05	e : 0.03	i : 0.03	
d : 0.46	c : 0.18	a : 0.15	g : 0.06	b : 0.05	e : 0.03	i : 0.03	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.46	c : 0.18	a : 0.15	g : 0.06	b : 0.05	e : 0.03	i : 0.03	
d : 0.46	c : 0.18	] : 0.08	2 : 0.06	g : 0.06	b : 0.05	e : 0.03	i : 0.03	
d : 0.46	c : 0.18	g : 0.08	2 : 0.06	e : 0.06	b : 0.05	3 : 0.03	i : 0.03	
d : 0.48	g : 0.10	b : 0.08	] : 0.06	e : 0.06	4 : 0.05	3 : 0.05	i : 0.03	f : 0.01	2 : 0.01	c : 0.01	
] : 0.15	2 : 0.15	g : 0.13	3 : 0.13	e : 0.08	b : 0.06	f : 0.05	4 : 0.05	a : 0.03	c : 0.03	i : 0.03	= : 0.01	d : 0.01	6 : 0.01	
2 : 0.15	g : 0.13	3 : 0.12	e : 0.10	f : 0.08	b : 0.06	d : 0.06	4 : 0.05	] : 0.05	c : 0.05	6 : 0.03	i : 0.03	= : 0.01	a : 0.01	
g : 0.15	e : 0.12	c : 0.12	b : 0.10	3 : 0.10	f : 0.08	d : 0.08	] : 0.06	4 : 0.05	6 : 0.03	i : 0.03	= : 0.01	2 : 0.01	

#score	932.7984979277231
#seq	58
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_CDS_m3_run1.txt

#BEAR
eeeeeqqqqqqqqeeeee	chr2:219410863-219411122(-)$1	259	222	240	14.8279
[ddddqqqqqqqqdddd]	chr8:23117615-23117932(+)$1	317	64	82	13.6553
eeeeeqqqqqqqqeeeee	chr8:100108451-100108717(+)$1	266	234	252	14.8279
eeeeeqqqqqqqqeeeee	chr2:10822011-10822291(-)$1	280	254	272	14.8279
[ddddqqqqqqqqdddd]	chr20:40112939-40113222(-)$1	283	120	138	13.6553
bbcccqqqqqqqqccc]b	chr17:49118827-49119100(-)$1	273	117	135	13.0186
cccbbqqqqqqqqbb]cc	chr3:48019255-48019485(-)$1	230	84	102	13.1416
fffffqqqqqqqqfffff	chr10:120816160-120816397(-)$1	237	28	46	13.9985
eeeeeqqqqqqqqeeeee	chr7:24905577-24905863(-)$1	286	174	192	14.8279
"ddddqqqqqqqqddddc	chr9:100777553-100777774(+)$1	221	174	192	13.4312
dd[bbqqqqqqqqbb]dd	chr2:242192756-242192981(-)$1	225	90	108	13.0638
ee[bbqqqqqqqqbbeee	chr12:53849567-53849775(+)$1	208	41	59	13.9412
eeeeeqqqqqqqqeeeee	chr5:149772854-149773183(+)$1	329	258	276	14.8279
fffffqqqqqqqqfffff	chr17:5326027-5326275(+)$1	248	153	171	13.9985
"""bbqqqqqqqqbb333	chr12:58162690-58163012(-)$1	322	207	225	13.2078
eeeeeqqqqqqqqeeeee	chr1:145761151-145761417(+)$1	266	9	27	14.8279
ff[bbqqqqqqqqbbfff	chr20:25442929-25443157(-)$1	228	75	93	13.4711
eeeeeqqqqqqqqeeeee	chr2:166866190-166866446(-)$1	256	23	41	14.8279
gggggqqqqqqqqggggg	chr19:15514192-15514447(-)$1	255	201	219	14.1230
dd!!aqqqqqqqqa22dd	chr7:74486342-74486683(-)$1	341	206	224	12.8202
eeeeeqqqqqqqqeeeee	chr16:16272605-16272850(-)$1	245	105	123	14.8279
eeebbqqqqqqqqbb]ee	chr5:96082954-96083197(+)$1	243	191	209	13.8909
eeeeeqqqqqqqqeeeee	chr6:35806029-35806291(-)$1	262	84	102	14.8279
!!cccqqqqqqqqccc44	chr2:242438634-242438906(-)$1	272	101	119	14.1008
eeeeeqqqqqqqqeeeee	chr11:63719820-63720154(+)$1	334	241	259	14.8279
ff[bbqqqqqqqqbb]ff	chr9:117063463-117063684(+)$1	221	84	102	13.4718
ccc[aqqqqqqqqa]ccc	chr10:115662141-115662455(+)$1	314	266	284	13.4588
dd[bbqqqqqqqqbb]dd	chr19:42797012-42797254(+)$1	242	14	32	13.0638
ii[bbqqqqqqqqbb22i	chr11:581410-581676(+)$1	266	149	167	12.9678
c[cccqqqqqqqqccc]c	chr13:103295509-103295744(+)$1	235	144	162	14.0443
iiiiiqqqqqqqqiiiii	chr16:66759686-66759946(-)$1	260	116	134	13.8453
"ddddqqqqqqqqdddd3	chr5:137902269-137902484(-)$1	215	126	144	13.5327
eeeeeqqqqqqqqeeeee	chr2:153417427-153417635(+)$1	208	163	181	14.8279
fffffqqqqqqqqfffff	chr14:31588901-31589137(-)$1	236	105	123	13.9985
!!cccqqqqqqqqccc33	chr17:41569448-41569709(+)$1	261	224	242	14.2287
eeeeeqqqqqqqqeeeee	chr2:63091941-63092204(+)$1	263	159	177	14.8279
!ddddqqqqqqqqdddd2	chr9:116269494-116269848(+)$1	354	125	143	13.4007
eeeeeqqqqqqqqeeeee	chr22:47103665-47103948(-)$1	283	243	261	14.8279
eeeeeqqqqqqqqeeeee	chr12:100934384-100934694(+)$1	310	21	39	14.8279
eeeeeqqqqqqqqeeeee	chr7:87505749-87506151(+)$1	402	19	37	14.8279
eeeeeqqqqqqqqeeeee	chr21:37728834-37729126(+)$1	292	251	269	14.8279
=====qqqqqqqq=====	chr2:122485210-122485514(-)$1	304	229	247	14.1260
fffffqqqqqqqqfffff	chr16:15758515-15758776(+)$1	261	188	206	13.9985
fffffqqqqqqqqfffff	chr14:56103891-56104183(+)$1	292	178	196	13.9985
gggggqqqqqqqqggggg	chr9:125895028-125895332(-)$1	304	233	251	14.1230
gggggqqqqqqqqggggg	chr3:193360662-193360900(+)$1	238	213	231	14.1230
fffffqqqqqqqqfffff	chr16:82197585-82197831(-)$1	246	110	128	13.9985
gggggqqqqqqqqggggg	chr9:131356476-131356709(+)$1	233	131	149	14.1230
fffffqqqqqqqqfffff	chr11:63764238-63764480(+)$1	242	40	58	13.9985
eeeeeqqqqqqqqeeeee	chr11:71727368-71727641(-)$1	273	52	70	14.8279
eeeeeqqqqqqqqeeeee	chr17:27834812-27835059(+)$1	247	182	200	14.8279
fffffqqqqqqqqfffff	chr2:54844644-54844852(+)$1	208	82	100	13.9985
cddddqqqqqqqqdddd4	chr3:12961811-12962057(-)$1	246	191	209	13.4199
"""bbqqqqqqqqbb333	chr13:28196913-28197200(+)$1	287	212	230	13.2078
eeeeaqqqqqqqqa]eee	chr10:32321595-32321802(-)$1	207	87	105	14.4456
[ddddqqqqqqqqdddd]	chr15:91503043-91503327(+)$1	284	172	190	13.6553
fffffqqqqqqqqfffff	chr4:119652421-119652681(-)$1	260	68	86	13.9985
fffffqqqqqqqqfffff	chr7:72856764-72856982(-)$1	218	1	19	13.9985
!!cccqqqqqqqqccc22	chr6:170118862-170119114(-)$1	252	205	223	13.7768
f[cccqqqqqqqqcccff	chr17:40497471-40497708(-)$1	237	89	107	14.1436
!!cccqqqqqqqqccc]d	chr19:49610780-49610988(+)$1	208	30	48	14.0925
[ddddqqqqqqqqdddda	chr16:89842049-89842292(-)$1	243	116	134	13.5115
eeeeeqqqqqqqqeeeee	chr17:4923810-4924055(+)$1	245	12	30	14.8279
eeeeeqqqqqqqqeeeee	chr17:45745552-45745783(+)$1	231	83	101	14.8279
d[cccqqqqqqqqccc]d	chr2:242179429-242179636(-)$1	207	3	21	13.8859
c[cccqqqqqqqqccc]c	chr8:144641858-144642140(+)$1	282	221	239	14.0443
gggggqqqqqqqqggggg	chr14:50146352-50146619(-)$1	267	232	250	14.1230
fffffqqqqqqqqfffff	chr10:19678290-19678533(+)$1	243	130	148	13.9985
fffffqqqqqqqqfffff	chr3:132437747-132437991(-)$1	244	57	75	13.9985
[ddddqqqqqqqqdddd]	chr19:39116593-39116844(+)$1	251	98	116	13.6553
eeeeeqqqqqqqqeeeee	chr11:67810320-67810529(+)$1	209	21	39	14.8279
!!cccqqqqqqqqccc]f	chr20:47842866-47843113(+)$1	247	141	159	14.2477
gggggqqqqqqqqggggg	chr1:94953233-94953447(+)$1	214	183	201	14.1230
g[cccqqqqqqqqccc33	chr9:130928973-130929197(-)$1	224	113	131	14.1984

#otherMatches

#Seq PSSM
UUAUAUUGGUAUUUGUAA	chr2:219410863-219411122(-)$1	259	222	240	14.8279
AAGGAAUUGGACAUCCUC	chr8:23117615-23117932(+)$1	317	64	82	13.6553
CCAAAUUUCAAUUUUUgg	chr8:100108451-100108717(+)$1	266	234	252	14.8279
AAAGGUCUUUUUUUUUUU	chr2:10822011-10822291(-)$1	280	254	272	14.8279
AGAAGAACUUUUCCUUCC	chr20:40112939-40113222(-)$1	283	120	138	13.6553
UCCCAUUACCUGCUGGAG	chr17:49118827-49119100(-)$1	273	117	135	13.0186
ACUCCUAGCCAAUGGUGG	chr3:48019255-48019485(-)$1	230	84	102	13.1416
UCAGAUUGACUAUUUUGA	chr10:120816160-120816397(-)$1	237	28	46	13.9985
GGUAAUGAGUGUUUUGCC	chr7:24905577-24905863(-)$1	286	174	192	14.8279
UGCAGAAACAGAACUGUU	chr9:100777553-100777774(+)$1	221	174	192	13.4312
GGCGAAGACAAGAUCACC	chr2:242192756-242192981(-)$1	225	90	108	13.0638
UCCUGUACAUACUCAGAU	chr12:53849567-53849775(+)$1	208	41	59	13.9412
CAGGUAAGUUAAGGUCUG	chr5:149772854-149773183(+)$1	329	258	276	14.8279
UAUUUAGCUACUGGAAUA	chr17:5326027-5326275(+)$1	248	153	171	13.9985
UCCCAAACCAGCCUGCCU	chr12:58162690-58163012(-)$1	322	207	225	13.2078
CCUUUAUUUUUCAAAAGG	chr1:145761151-145761417(+)$1	266	9	27	14.8279
UCGUGUGACCAUUCAGAU	chr20:25442929-25443157(-)$1	228	75	93	13.4711
GUUGUAUUAUAUAGCAAC	chr2:166866190-166866446(-)$1	256	23	41	14.8279
GCGGCUCCUGCCUGCUGC	chr19:15514192-15514447(-)$1	255	201	219	14.1230
UUCACAGGAGCCGGAAAG	chr7:74486342-74486683(-)$1	341	206	224	12.8202
GCUGGAUGACCCCCUGGC	chr16:16272605-16272850(-)$1	245	105	123	14.8279
AGUAUGAAUUAAGAUAAU	chr5:96082954-96083197(+)$1	243	191	209	13.8909
GAUCACAUUGCAUUGAUC	chr6:35806029-35806291(-)$1	262	84	102	14.8279
AGGGUGACGUGAAGCUGG	chr2:242438634-242438906(-)$1	272	101	119	14.1008
UAGGGGAGAGAGACCCUG	chr11:63719820-63720154(+)$1	334	241	259	14.8279
ccgugguUUGUUGCAGGG	chr9:117063463-117063684(+)$1	221	84	102	13.4718
GCUGAAAGAUCUGUGAGC	chr10:115662141-115662455(+)$1	314	266	284	13.4588
ACCCAGAGCAGAGUGAGU	chr19:42797012-42797254(+)$1	242	14	32	13.0638
GGAUGGACACCCACAGGU	chr11:581410-581676(+)$1	266	149	167	12.9678
UCGAAGCCAUGAAUUCUA	chr13:103295509-103295744(+)$1	235	144	162	14.0443
GGGGUGUUGGCCAGCUUC	chr16:66759686-66759946(-)$1	260	116	134	13.8453
AAGCUGCUGAAAAGGCUA	chr5:137902269-137902484(-)$1	215	126	144	13.5327
UGGGACAGCAGGCUCCUA	chr2:153417427-153417635(+)$1	208	163	181	14.8279
CAUGGGAUGAUGAUUAUG	chr14:31588901-31589137(-)$1	236	105	123	13.9985
UGUCCUGUCCUUUGGAAG	chr17:41569448-41569709(+)$1	261	224	242	14.2287
GGAUGAGUAAGUACAUUU	chr2:63091941-63092204(+)$1	263	159	177	14.8279
AGCCAGGACCAGAUGGCG	chr9:116269494-116269848(+)$1	354	125	143	13.4007
GUUCCCGUCCUUAGGAAU	chr22:47103665-47103948(-)$1	283	243	261	14.8279
UAUUGUUACUCCUUGAUA	chr12:100934384-100934694(+)$1	310	21	39	14.8279
ggcgCGCGUAUCGGCGCC	chr7:87505749-87506151(+)$1	402	19	37	14.8279
GGGAUUGUACAAUGUUUC	chr21:37728834-37729126(+)$1	292	251	269	14.8279
uauuucuuuugaaaaaua	chr2:122485210-122485514(-)$1	304	229	247	14.1260
GACCUACAAACAGAGGUC	chr16:15758515-15758776(+)$1	261	188	206	13.9985
AAUGCAGGUUCAGGUAUU	chr14:56103891-56104183(+)$1	292	178	196	13.9985
GGCCCCCUUUACUGGGCC	chr9:125895028-125895332(-)$1	304	233	251	14.1230
AAUUAAAUGUUUAUGAUU	chr3:193360662-193360900(+)$1	238	213	231	14.1230
UGGUACUUGGAUUUGCCA	chr16:82197585-82197831(-)$1	246	110	128	13.9985
GAGCAGGUUGAGGUGCUC	chr9:131356476-131356709(+)$1	233	131	149	14.1230
GGGCUGGUCGAGGAGCCC	chr11:63764238-63764480(+)$1	242	40	58	13.9985
CAUUUACUCCCAGAAAUG	chr11:71727368-71727641(-)$1	273	52	70	14.8279
CAUCAAAAGCAACUGAUG	chr17:27834812-27835059(+)$1	247	182	200	14.8279
CUGCUUUGUCCUUGGCAG	chr2:54844644-54844852(+)$1	208	82	100	13.9985
UCCCCAGAUGUAAGGGGC	chr3:12961811-12962057(-)$1	246	191	209	13.4199
AGACCAUACCCUAGGAAA	chr13:28196913-28197200(+)$1	287	212	230	13.2078
UUCACAAUUCUAGGAUGA	chr10:32321595-32321802(-)$1	207	87	105	14.4456
GUCGCAAGGGAAGGUGAG	chr15:91503043-91503327(+)$1	284	172	190	13.6553
CUGAGUCCCGUCUUUCAG	chr4:119652421-119652681(-)$1	260	68	86	13.9985
GGGCUCUCAGCCAAGCCC	chr7:72856764-72856982(-)$1	218	1	19	13.9985
GACCUCCUUUAAAAGGAA	chr6:170118862-170119114(-)$1	252	205	223	13.7768
GGAAGAAUCACGCCUUCU	chr17:40497471-40497708(-)$1	237	89	107	14.1436
UCGGCUCAUUUCUGCUCC	chr19:49610780-49610988(+)$1	208	30	48	14.0925
GCUCUGCUGCUGAAGAGA	chr16:89842049-89842292(-)$1	243	116	134	13.5115
GCUUCAACCACCCGGAGC	chr17:4923810-4924055(+)$1	245	12	30	14.8279
GACAUUGUCCCACAUGUC	chr17:45745552-45745783(+)$1	231	83	101	14.8279
GGAGCCCGAGCUUGCUGU	chr2:242179429-242179636(-)$1	207	3	21	13.8859
AAUGAAUGUGUACUCGCU	chr8:144641858-144642140(+)$1	282	221	239	14.0443
UUUAAUUAUUGUCUUGGA	chr14:50146352-50146619(-)$1	267	232	250	14.1230
GGGUGACAAAGCACACUU	chr10:19678290-19678533(+)$1	243	130	148	13.9985
GAGUUGGAGAGCAAACUU	chr3:132437747-132437991(-)$1	244	57	75	13.9985
AUUUUGUACCUCGGGGAC	chr19:39116593-39116844(+)$1	251	98	116	13.6553
CCCAGGCAGGAGACUGGG	chr11:67810320-67810529(+)$1	209	21	39	14.8279
GAAGGCGUGCAUACCUGU	chr20:47842866-47843113(+)$1	247	141	159	14.2477
AAGUAAAAACUAAUAUUU	chr1:94953233-94953447(+)$1	214	183	201	14.1230
CACAGCUCUCCCACUGCA	chr9:130928973-130929197(-)$1	224	113	131	14.1984

#DB
(((((........)))))	chr2:219410863-219411122(-)$1	1	222	240	14.8279
.((((........)))).	chr8:23117615-23117932(+)$1	1	64	82	13.6553
(((((........)))))	chr8:100108451-100108717(+)$1	1	234	252	14.8279
(((((........)))))	chr2:10822011-10822291(-)$1	1	254	272	14.8279
.((((........)))).	chr20:40112939-40113222(-)$1	1	120	138	13.6553
(((((........))).)	chr17:49118827-49119100(-)$1	1	117	135	13.0186
(((((........)).))	chr3:48019255-48019485(-)$1	1	84	102	13.1416
(((((........)))))	chr10:120816160-120816397(-)$1	1	28	46	13.9985
(((((........)))))	chr7:24905577-24905863(-)$1	1	174	192	14.8279
.((((........)))))	chr9:100777553-100777774(+)$1	1	174	192	13.4312
((.((........)).))	chr2:242192756-242192981(-)$1	1	90	108	13.0638
((.((........)))))	chr12:53849567-53849775(+)$1	1	41	59	13.9412
(((((........)))))	chr5:149772854-149773183(+)$1	1	258	276	14.8279
(((((........)))))	chr17:5326027-5326275(+)$1	1	153	171	13.9985
...((........))...	chr12:58162690-58163012(-)$1	1	207	225	13.2078
(((((........)))))	chr1:145761151-145761417(+)$1	1	9	27	14.8279
((.((........)))))	chr20:25442929-25443157(-)$1	1	75	93	13.4711
(((((........)))))	chr2:166866190-166866446(-)$1	1	23	41	14.8279
(((((........)))))	chr19:15514192-15514447(-)$1	1	201	219	14.1230
((..(........)..))	chr7:74486342-74486683(-)$1	1	206	224	12.8202
(((((........)))))	chr16:16272605-16272850(-)$1	1	105	123	14.8279
(((((........)).))	chr5:96082954-96083197(+)$1	1	191	209	13.8909
(((((........)))))	chr6:35806029-35806291(-)$1	1	84	102	14.8279
..(((........)))..	chr2:242438634-242438906(-)$1	1	101	119	14.1008
(((((........)))))	chr11:63719820-63720154(+)$1	1	241	259	14.8279
((.((........)).))	chr9:117063463-117063684(+)$1	1	84	102	13.4718
(((.(........).)))	chr10:115662141-115662455(+)$1	1	266	284	13.4588
((.((........)).))	chr19:42797012-42797254(+)$1	1	14	32	13.0638
((.((........))..)	chr11:581410-581676(+)$1	1	149	167	12.9678
(.(((........))).)	chr13:103295509-103295744(+)$1	1	144	162	14.0443
(((((........)))))	chr16:66759686-66759946(-)$1	1	116	134	13.8453
.((((........)))).	chr5:137902269-137902484(-)$1	1	126	144	13.5327
(((((........)))))	chr2:153417427-153417635(+)$1	1	163	181	14.8279
(((((........)))))	chr14:31588901-31589137(-)$1	1	105	123	13.9985
..(((........)))..	chr17:41569448-41569709(+)$1	1	224	242	14.2287
(((((........)))))	chr2:63091941-63092204(+)$1	1	159	177	14.8279
.((((........)))).	chr9:116269494-116269848(+)$1	1	125	143	13.4007
(((((........)))))	chr22:47103665-47103948(-)$1	1	243	261	14.8279
(((((........)))))	chr12:100934384-100934694(+)$1	1	21	39	14.8279
(((((........)))))	chr7:87505749-87506151(+)$1	1	19	37	14.8279
(((((........)))))	chr21:37728834-37729126(+)$1	1	251	269	14.8279
(((((........)))))	chr2:122485210-122485514(-)$1	1	229	247	14.1260
(((((........)))))	chr16:15758515-15758776(+)$1	1	188	206	13.9985
(((((........)))))	chr14:56103891-56104183(+)$1	1	178	196	13.9985
(((((........)))))	chr9:125895028-125895332(-)$1	1	233	251	14.1230
(((((........)))))	chr3:193360662-193360900(+)$1	1	213	231	14.1230
(((((........)))))	chr16:82197585-82197831(-)$1	1	110	128	13.9985
(((((........)))))	chr9:131356476-131356709(+)$1	1	131	149	14.1230
(((((........)))))	chr11:63764238-63764480(+)$1	1	40	58	13.9985
(((((........)))))	chr11:71727368-71727641(-)$1	1	52	70	14.8279
(((((........)))))	chr17:27834812-27835059(+)$1	1	182	200	14.8279
(((((........)))))	chr2:54844644-54844852(+)$1	1	82	100	13.9985
(((((........)))).	chr3:12961811-12962057(-)$1	1	191	209	13.4199
...((........))...	chr13:28196913-28197200(+)$1	1	212	230	13.2078
(((((........).)))	chr10:32321595-32321802(-)$1	1	87	105	14.4456
.((((........)))).	chr15:91503043-91503327(+)$1	1	172	190	13.6553
(((((........)))))	chr4:119652421-119652681(-)$1	1	68	86	13.9985
(((((........)))))	chr7:72856764-72856982(-)$1	1	1	19	13.9985
..(((........)))..	chr6:170118862-170119114(-)$1	1	205	223	13.7768
(.(((........)))))	chr17:40497471-40497708(-)$1	1	89	107	14.1436
..(((........))).)	chr19:49610780-49610988(+)$1	1	30	48	14.0925
.((((........)))))	chr16:89842049-89842292(-)$1	1	116	134	13.5115
(((((........)))))	chr17:4923810-4924055(+)$1	1	12	30	14.8279
(((((........)))))	chr17:45745552-45745783(+)$1	1	83	101	14.8279
(.(((........))).)	chr2:242179429-242179636(-)$1	1	3	21	13.8859
(.(((........))).)	chr8:144641858-144642140(+)$1	1	221	239	14.0443
(((((........)))))	chr14:50146352-50146619(-)$1	1	232	250	14.1230
(((((........)))))	chr10:19678290-19678533(+)$1	1	130	148	13.9985
(((((........)))))	chr3:132437747-132437991(-)$1	1	57	75	13.9985
.((((........)))).	chr19:39116593-39116844(+)$1	1	98	116	13.6553
(((((........)))))	chr11:67810320-67810529(+)$1	1	21	39	14.8279
..(((........))).)	chr20:47842866-47843113(+)$1	1	141	159	14.2477
(((((........)))))	chr1:94953233-94953447(+)$1	1	183	201	14.1230
(.(((........)))..	chr9:130928973-130929197(-)$1	1	113	131	14.1984

#PSSM
e : 0.32	f : 0.20	g : 0.09	! : 0.08	[ : 0.06	c : 0.06	" : 0.05	d : 0.05	i : 0.02	b : 0.01	= : 0.01	
e : 0.32	f : 0.18	d : 0.16	g : 0.08	! : 0.06	[ : 0.06	c : 0.02	" : 0.02	i : 0.02	b : 0.01	= : 0.01	
e : 0.31	c : 0.17	f : 0.16	d : 0.12	[ : 0.08	g : 0.08	" : 0.02	! : 0.01	i : 0.01	= : 0.01	
e : 0.29	f : 0.16	c : 0.14	b : 0.13	d : 0.12	g : 0.08	! : 0.01	[ : 0.01	i : 0.01	= : 0.01	
e : 0.28	f : 0.16	c : 0.14	b : 0.13	d : 0.12	g : 0.08	a : 0.04	i : 0.01	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.28	f : 0.16	c : 0.14	b : 0.13	d : 0.12	g : 0.08	a : 0.04	i : 0.01	= : 0.01	
e : 0.28	f : 0.16	c : 0.14	b : 0.13	d : 0.12	g : 0.08	] : 0.02	2 : 0.01	i : 0.01	= : 0.01	
e : 0.31	f : 0.17	c : 0.16	d : 0.12	g : 0.08	] : 0.06	3 : 0.02	2 : 0.02	i : 0.01	= : 0.01	
e : 0.32	f : 0.20	d : 0.16	] : 0.08	g : 0.08	3 : 0.05	c : 0.02	2 : 0.02	4 : 0.01	i : 0.01	= : 0.01	
e : 0.32	f : 0.21	g : 0.08	c : 0.06	d : 0.06	3 : 0.06	] : 0.05	4 : 0.02	i : 0.02	2 : 0.02	b : 0.01	= : 0.01	a : 0.01	

#score	1041.9310159447873
#seq	74
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_CDS_m3_run1.txt

#BEAR
ggg"""cccxxxxxxxxxxxxxxxccc4444ggggggg:	chrM:6428-6700(+)$1	272	51	90	13.1743
eeee[a[ffffff[cccnnnnncccffffff]aeeeee8	chr12:9231821-9232027(-)$1	206	129	168	12.2644
!!===============oooooo===============5	chr8:22275132-22275395(+)$1	263	173	212	15.4732
ggggg!!ccc!!cccaooooooa]ccc]cccggggggg2	chr20:49509820-49510116(-)$1	296	230	269	16.0148
ggg"""cccxxxxxxxxxxxxxxxccc4444ggggggg0	chrM:6376-6586(+)$1	210	103	142	13.6435
:ccc[bb[ccc"""cccnnnnnccc333cccbb333ccc	chr12:124821313-124821589(-)$1	276	75	114	15.6248
cc[a[ggggggg!!cccmmmmccc]ggggggga]cccee	chr2:216229598-216229808(-)$1	210	71	110	12.8061
dddd####bb####ddddllldddd4444bb333dddd:	chr12:124821429-124821826(-)$1	397	356	395	13.3740
==========####cccnnnnnccc4444==========	chr4:74281873-74282076(+)$1	203	59	98	18.9540
ddd$$$$$bb####cccnnnnnccc333bb333dddd33	chr16:72828694-72828959(-)$1	265	53	92	15.7061
==========[a!!cccnnnnnccc22a]==========	chr2:21228400-21228609(-)$1	209	41	80	17.7409
bb[ddddccc####ddddllldddd4444ccc22dddd]	chr22:29191236-29191470(-)$1	234	186	225	13.6851
d"""ccc[eeeee[ccclllccceeeee333ccc22ddd	chr2:21230367-21230606(-)$1	239	127	166	11.8186
cccaccc[ccc[bbrrrrrrrrrbb]cccccc]a]cccc	chr17:36892241-36892463(-)$1	222	60	99	11.8802
ggggggg[a!!bb[cccnnnnnccc]bb22a]ggggggg	chr12:125302009-125302260(-)$1	251	174	213	15.1767
===========abbddddllldddd333bb]a]======	chr1:115260588-115260912(-)$1	324	53	92	14.1722
ggggg[a####ccccccnnnnnccc]ccc4444a]gggg	chr14:94845769-94845998(-)$1	229	101	140	16.7126
fffff!!ccc!!a[cccooooooccc]a]ccc22fffff	chr2:21234334-21234552(-)$1	218	28	67	16.6486
ggggg[a####ccccccnnnnnccc]ccc4444a]gggg	chr14:94845844-94846048(-)$1	204	151	190	16.7126
[dddd[ccc[a[eeeeennnnneeeee]a]cccdddd22	chr8:101721620-101721835(-)$1	215	126	165	11.8454
dddd$$$$$ccc[ddddnnnnndddd333ccc4444ddd	chr12:53854748-53854957(+)$1	209	128	167	14.0471
gggggggccc[ccc[bboooooobb]ccc]ccc]ggggg	chr5:32415008-32415344(-)$1	336	209	248	14.3665
fffff!!bb####ddddoooooodddd333bb333ffff	chr3:13359090-13359350(-)$1	260	145	184	15.8368
==========####cccnnnnnccc333==========:	chr15:64448134-64448362(-)$1	228	0	39	18.4758
eeee!!dddd!!eeeeeooooooeeeee]dddd22eeee	chr12:111953857-111954180(-)$1	323	254	293	11.9828
#dddd[ccc"""a[cccmmmmccc]a333ccc22dddd2	chr2:21228150-21228388(-)$1	238	89	128	14.4509
:iiiiiiiii"""a!!ccclllccc22a]iiiiiiiii:	chr2:21225746-21225967(-)$1	221	57	96	13.5396
fff!!ccc!!ccc!!bbnnnnnbb22ccc22ccc]ffff	chr22:39917985-39918250(+)$1	265	212	251	12.9642
g"""eeeeeaaffffffooooooffffff4444a]a]ee	chr22:38271820-38272099(+)$1	279	128	167	12.1365
==========^^^^^^^^^^^^^^^^^^==========a	chr10:81070666-81070943(+)$1	277	193	232	12.1432
eeee!!ccc!!bb[bboooooobb]bb22ccc22eeeee	chr17:80525828-80526108(+)$1	280	62	101	12.9901
iiiiiii!!cccssssssssssccc333iiiiiiiiidd	chr12:9268270-9268501(-)$1	231	61	100	12.3079
fffa[ccc####eeeeennnnneeeeeccc]a]ffffff	chr20:34214090-34214342(-)$1	252	151	190	13.3446
iiiiiiiii[a[ddddoooooodddd]a]iiiiiiiii2	chr4:74283877-74284114(+)$1	237	145	184	15.3370
ccc!!a"""dddd[cccoooooocccdddd333a22ccc	chr2:21230943-21231160(-)$1	217	174	213	14.8989
eeeee!!ccc####ddddmmmmdddd22ccc]eeeeeii	chr1:24019004-24019338(+)$1	334	231	270	12.7337
ddd[ccc!!ccc[ccclllccc]ccc333ccc22dddd:	chr7:139315812-139316072(-)$1	260	156	195	12.0532
ee"""eeeee"""ddddnnnnndddd333eeeee333ee	chr19:50002698-50002925(+)$1	227	135	174	14.6247
ff[ddddffffffcccooooooccc22ffffff]dddd3	chr14:94849039-94849278(-)$1	239	32	71	12.1639
cc"""eeeee####cccmmmmccc333eeeee4444ccc	chr16:11643226-11643535(-)$1	309	63	102	13.6046
ddcccggggggg[ddddnnnnndddd]ggggggg333cc	chr8:101718928-101719133(-)$1	205	62	101	13.4040
cc[gggggggccc[cccoooooocccccc22gggggggc	chr12:57107219-57107438(-)$1	219	121	160	15.5198
ff!!ccc[ccc[ccc[aooooooaccc]cccccc]ffff	chr22:38273988-38274247(+)$1	259	43	82	15.2217
$ccc!!dddd"""ddddoooooodddddddd333ccc77	chr2:21228853-21229076(-)$1	223	89	128	13.4564
bb!!ffffff####cccoooooocccffffff]bbffff	chr4:187524762-187525037(-)$1	275	35	74	13.8566
gggggg"""ggggggg[ammmmaggggggg4444ggggg	chr12:57108045-57108267(-)$1	222	31	70	12.4477
iiiiiii!!cccssssssssssccc333iiiiiiiiidd	chr12:9268259-9268470(-)$1	211	30	69	12.3079
ffffff[bb"""ddddoooooodddd333bb]ffffff:	chr2:216256354-216256579(-)$1	225	136	175	13.4195
####ccc[bb"""ddddoooooodddd22bb]ccc22dd	chr4:83763261-83763537(-)$1	276	174	213	13.8855
[ccc[a[a[dddd[cccnnnnnccc]dddda]a]ccc]b	chr2:21225595-21225803(-)$1	208	153	192	13.7437
cc[gggggggccc[cccoooooocccccc22gggggggc	chr12:57107238-57107493(-)$1	255	176	215	15.5198
fffff!!ccc!!a[cccooooooccc]a]ccc22fffff	chr2:21234300-21234534(-)$1	234	10	49	16.6486
ffffffccc"""bbcccmmmmccc]bb333ccc]fffff	chrX:131516150-131516401(-)$1	251	138	177	12.8925

#otherMatches

#Seq PSSM
AGUCCUACUUCUCCUAUCUCUCCCAGUCCUAGCUGCUGG	chrM:6428-6700(+)$1	272	51	90	13.1743
UAUGAUGGCUCCUACAGCACCUUUGGGGAGCGAUAUGGC	chr12:9231821-9232027(-)$1	206	129	168	12.2644
GCUAGCUGGAGGAAUGUUCUUGUAUAUUUCUCUGGCUGA	chr8:22275132-22275395(+)$1	263	173	212	15.4732
UUUUCCUGAAAAUGUCUAUAGUGUGCACUUCGAAAAAGA	chr20:49509820-49510116(-)$1	296	230	269	16.0148
AGUCCUACUUCUCCUAUCUCUCCCAGUCCUAGCUGCUGG	chrM:6376-6586(+)$1	210	103	142	13.6435
AGCCCGCCUCCUCCCCCAGCAAGGGCUCGGAGCCCCGGC	chr12:124821313-124821589(-)$1	276	75	114	15.6248
GCGUGCAUCUGUCUUGUGUCUAUAUGCAGAUGAGGCAAC	chr2:216229598-216229808(-)$1	210	71	110	12.8061
GUGCCUCCUGUCUCUGGCCACGCCACCAUCGCCCGCACC	chr12:124821429-124821826(-)$1	397	356	395	13.3740
UGAGGCAUAAUACUAUUAACACAAUUCUUUUAUGUUUCA	chr4:74281873-74282076(+)$1	203	59	98	18.9540
CAGUUCAUCCACCCCCAGUUUUUGGACAGGUCCCUGGAU	chr16:72828694-72828959(-)$1	265	53	92	15.7061
AGUUUUGGCUGAUAAAUUCAUUAUUCCUGGGCUGAAACU	chr2:21228400-21228609(-)$1	209	41	80	17.7409
GUGACUGUGGAUACGGGGGUUCCCUUUCCCCAUUCAGUG	chr22:29191236-29191470(-)$1	234	186	225	13.6851
GCAAGUAAGUGCUAGGUUCAAUCAGUAUAAGUACAACCA	chr2:21230367-21230606(-)$1	239	127	166	11.8186
CGAGCCACUGAAGGAAUACUACACCCUCAUGGACAUCGC	chr17:36892241-36892463(-)$1	222	60	99	11.8802
UGUCCAGGUGAGGGUGGAGGGGCCGGCUGAGGCUGGGCA	chr12:125302009-125302260(-)$1	251	174	213	15.1767
UUUUUUUUUCUCCCCCCCACAGGGGUUUGGUGCAGAAAG	chr1:115260588-115260912(-)$1	324	53	92	14.1722
GAAGAGCGUCCUGGGUCAACUGGGCAUCACUAAGGUCUU	chr14:94845769-94845998(-)$1	229	101	140	16.7126
CAAAUGACAUGAUGGGCUCAUAUGCUGAAAUGAAAUUUG	chr2:21234334-21234552(-)$1	218	28	67	16.6486
GAAGAGCGUCCUGGGUCAACUGGGCAUCACUAAGGUCUU	chr14:94845844-94846048(-)$1	204	151	190	16.7126
ACUUCAUGGCAGCUAUCCCACAGGUAGGUUUUAGAAGGC	chr8:101721620-101721835(-)$1	215	126	165	11.8454
CCACAAUCCAUCAUUGAGUGUGUCAAACAGAUCUGCGUG	chr12:53854748-53854957(+)$1	209	128	167	14.0471
UACUGUGGUGCCAUCCUAUACUCAGAGUGCUACUUACAG	chr5:32415008-32415344(-)$1	336	209	248	14.3665
GAGCCCAGCCUAUGCCUCCCACUAGGCCGCGUGAAGGUU	chr3:13359090-13359350(-)$1	260	145	184	15.8368
UCCACCUUUCUUUUCCAGGAGGUGGUGCGGAAGGUGGAG	chr15:64448134-64448362(-)$1	228	0	39	18.4758
UUGUCUUUGUUUAACUCCUAUGUGAGUUUAUAAUUACAA	chr12:111953857-111954180(-)$1	323	254	293	11.9828
CCGUGCCUGAAUCUCAGUUAACUGUGUCCCAGUUCACGC	chr2:21228150-21228388(-)$1	238	89	128	14.4509
GAGGUUCCAGAAAGCAGCCAGUGGCACCACUGGGACCUA	chr2:21225746-21225967(-)$1	221	57	96	13.5396
AUAAUGAUAGUGGCAUCUGUAUGAGCCCAGAGUCCUAUC	chr22:39917985-39918250(+)$1	265	212	251	12.9642
CGCCAACAUCCUCCUCUACAUCCAGAGGACCAAGAGCAU	chr22:38271820-38272099(+)$1	279	128	167	12.1365
CCUGACCUUUAACCCCUCCUCAGCCUUAGAGGGUCAGGC	chr10:81070666-81070943(+)$1	277	193	232	12.1432
UGUGAUAGACUAAUAGGAACAACUUUUUCUCUUCCACAG	chr17:80525828-80526108(+)$1	280	62	101	12.9901
GAAGAACAAACUCCUUCAUCCAAGUCUGGUUCUUCUCCU	chr12:9268270-9268501(-)$1	231	61	100	12.3079
AGGAUCCUGCACAGGCCCCCCAGGCCUAGGUUCCCUUGG	chr20:34214090-34214342(-)$1	252	151	190	13.3446
ACAAACGUGAGGAGUAUUUCAUUACUGCAUGUGUUUGUA	chr4:74283877-74284114(+)$1	237	145	184	15.3370
CAUAGCAUGGACUUCUUCUGGAAAAGGGUCAUGGAAAUG	chr2:21230943-21231160(-)$1	217	174	213	14.8989
UGUGUUUUCCAAAGGUGAGUAGUCACAAGGACAUACAGG	chr1:24019004-24019338(+)$1	334	231	270	12.7337
CUGAAGGUAGGAAGAGCGUCUCCUCCACUCCUCACAGUG	chr7:139315812-139316072(-)$1	260	156	195	12.0532
UCAACGUGCUCAAGGUCACCAAGGCUGCCGGCACCAAGA	chr19:50002698-50002925(+)$1	227	135	174	14.6247
AGAUUCCGGAGGCUCAGAUCCAUGAAGGCUUCCAGGAAC	chr14:94849039-94849278(-)$1	239	32	71	12.1639
GAGCCGGGUGCCGCAGGAAGUCCUUUCCACCUCUCAUCC	chr16:11643226-11643535(-)$1	309	63	102	13.6046
AGAGCAAGAUAAAAAUACAAAAUGUUCUUAUUUUUUAGC	chr8:101718928-101719133(-)$1	205	62	101	13.4040
AGUAAACUUUUCUUGGGCAUUGUUCCAGACcaggguuuc	chr12:57107219-57107438(-)$1	219	121	160	15.5198
GGCUUCCUGGACCUCACAGAGCAGGAGUUCCGGAUCCAG	chr22:38273988-38274247(+)$1	259	43	82	15.2217
AGCAAAGCCACCCUGGAACUCUCUCCAUGGCAAAUGUCA	chr2:21228853-21229076(-)$1	223	89	128	13.4564
UCAGGUGGCGUCAUUGGGAAGAUCCAUGCCACAGACCAG	chr4:187524762-187525037(-)$1	275	35	74	13.8566
UUUAUCUUCUUAGCUGGCGGCAGCAGCUGAAAUUGAUGA	chr12:57108045-57108267(-)$1	222	31	70	12.4477
GAAGAACAAACUCCUUCAUCCAAGUCUGGUUCUUCUCCU	chr12:9268259-9268470(-)$1	211	30	69	12.3079
CUUCCUGGUGCGUUACUCACCUGUGAAAAAUGAGGAAGA	chr2:216256354-216256579(-)$1	225	136	175	13.4195
UUAUGCACUGCCUCCUGGAACAACAGGUACACUGCCUGC	chr4:83763261-83763537(-)$1	276	174	213	13.8855
AACUUUGCACUAUGUUCAUAAGGGAGGUAGGGACGGUAC	chr2:21225595-21225803(-)$1	208	153	192	13.7437
AGUAAACUUUUCUUGGGCAUUGUUCCAGACcaggguuuc	chr12:57107238-57107493(-)$1	255	176	215	15.5198
CAAAUGACAUGAUGGGCUCAUAUGCUGAAAUGAAAUUUG	chr2:21234300-21234534(-)$1	234	10	49	16.6486
UGCAGCAACAACACCUGCCACCAGCGUUCCGUUCGCUGC	chrX:131516150-131516401(-)$1	251	138	177	12.8925

#DB
(((...(((...............)))....))))))).	chrM:6428-6700(+)$1	1	51	90	13.1743
((((.(.((((((.(((.....))))))))).)))))).	chr12:9231821-9232027(-)$1	1	129	168	12.2644
..(((((((((((((((......))))))))))))))).	chr8:22275132-22275395(+)$1	1	173	212	15.4732
(((((..(((..((((......).))).)))))))))).	chr20:49509820-49510116(-)$1	1	230	269	16.0148
(((...(((...............)))....))))))).	chrM:6376-6586(+)$1	1	103	142	13.6435
.(((.((.(((...(((.....)))...)))))...)))	chr12:124821313-124821589(-)$1	1	75	114	15.6248
((.(.(((((((..(((....))).)))))))).)))((	chr2:216229598-216229808(-)$1	1	71	110	12.8061
((((....((....((((...))))....))...)))).	chr12:124821429-124821826(-)$1	1	356	395	13.3740
((((((((((....(((.....)))....))))))))))	chr4:74281873-74282076(+)$1	1	59	98	18.9540
(((.....((....(((.....)))...))...))))..	chr16:72828694-72828959(-)$1	1	53	92	15.7061
((((((((((.(..(((.....)))..).))))))))))	chr2:21228400-21228609(-)$1	1	41	80	17.7409
((.(((((((....((((...))))....)))..)))).	chr22:29191236-29191470(-)$1	1	186	225	13.6851
(...(((.(((((.(((...))))))))...)))..)))	chr2:21230367-21230606(-)$1	1	127	166	11.8186
(((((((.(((.((.........)).)))))).).))))	chr17:36892241-36892463(-)$1	1	60	99	11.8802
(((((((.(..((.(((.....))).))..).)))))))	chr12:125302009-125302260(-)$1	1	174	213	15.1767
((((((((((((((((((...))))...)).).))))))	chr1:115260588-115260912(-)$1	1	53	92	14.1722
(((((.(....((((((.....))).)))....).))))	chr14:94845769-94845998(-)$1	1	101	140	16.7126
(((((..(((..(.(((......))).).)))..)))))	chr2:21234334-21234552(-)$1	1	28	67	16.6486
(((((.(....((((((.....))).)))....).))))	chr14:94845844-94846048(-)$1	1	151	190	16.7126
.((((.(((.(.(((((.....))))).).)))))))..	chr8:101721620-101721835(-)$1	1	126	165	11.8454
((((.....(((.((((.....))))...)))....)))	chr12:53854748-53854957(+)$1	1	128	167	14.0471
((((((((((.(((.((......)).))).))).)))))	chr5:32415008-32415344(-)$1	1	209	248	14.3665
(((((..((....((((......))))...))...))))	chr3:13359090-13359350(-)$1	1	145	184	15.8368
((((((((((....(((.....)))...)))))))))).	chr15:64448134-64448362(-)$1	1	0	39	18.4758
((((..((((..(((((......))))).))))..))))	chr12:111953857-111954180(-)$1	1	254	293	11.9828
.((((.(((...(.(((....))).)...)))..)))).	chr2:21228150-21228388(-)$1	1	89	128	14.4509
.(((((((((...(..(((...)))..).))))))))).	chr2:21225746-21225967(-)$1	1	57	96	13.5396
(((..(((..(((..((.....))..)))..))).))))	chr22:39917985-39918250(+)$1	1	212	251	12.9642
(...(((((((((((((......))))))....).).))	chr22:38271820-38272099(+)$1	1	128	167	12.1365
((((((((((..................)))))))))))	chr10:81070666-81070943(+)$1	1	193	232	12.1432
((((..(((..((.((......)).))..)))..)))))	chr17:80525828-80526108(+)$1	1	62	101	12.9901
(((((((..(((..........)))...)))))))))((	chr12:9268270-9268501(-)$1	1	61	100	12.3079
((((.(((....(((((.....)))))))).).))))))	chr20:34214090-34214342(-)$1	1	151	190	13.3446
(((((((((.(.((((......)))).).))))))))).	chr4:74283877-74284114(+)$1	1	145	184	15.3370
(((..(...((((.(((......)))))))...)..)))	chr2:21230943-21231160(-)$1	1	174	213	14.8989
(((((..(((....((((....))))..))).)))))))	chr1:24019004-24019338(+)$1	1	231	270	12.7337
(((.(((..(((.(((...))).)))...)))..)))).	chr7:139315812-139316072(-)$1	1	156	195	12.0532
((...(((((...((((.....))))...)))))...))	chr19:50002698-50002925(+)$1	1	135	174	14.6247
((.(((((((((((((......)))..)))))).)))).	chr14:94849039-94849278(-)$1	1	32	71	12.1639
((...(((((....(((....)))...)))))....)))	chr16:11643226-11643535(-)$1	1	63	102	13.6046
))((((((((((.((((.....)))).)))))))...))	chr8:101718928-101719133(-)$1	1	62	101	13.4040
((.((((((((((.(((......))))))..))))))))	chr12:57107219-57107438(-)$1	1	121	160	15.5198
((..(((.(((.(((.(......)))).)))))).))))	chr22:38273988-38274247(+)$1	1	43	82	15.2217
.(((..((((...((((......))))))))...)))..	chr2:21228853-21229076(-)$1	1	89	128	13.4564
((..((((((....(((......))))))))).))))))	chr4:187524762-187525037(-)$1	1	35	74	13.8566
((((((...(((((((.(....))))))))....)))))	chr12:57108045-57108267(-)$1	1	31	70	12.4477
(((((((..(((..........)))...)))))))))((	chr12:9268259-9268470(-)$1	1	30	69	12.3079
((((((.((...((((......))))...)).)))))).	chr2:216256354-216256579(-)$1	1	136	175	13.4195
....(((.((...((((......))))..)).)))..))	chr4:83763261-83763537(-)$1	1	174	213	13.8855
.(((.(.(.((((.(((.....))).))))).).))).)	chr2:21225595-21225803(-)$1	1	153	192	13.7437
((.((((((((((.(((......))))))..))))))))	chr12:57107238-57107493(-)$1	1	176	215	15.5198
(((((..(((..(.(((......))).).)))..)))))	chr2:21234300-21234534(-)$1	1	10	49	16.6486
(((((((((...(((((....))).))...))).)))))	chrX:131516150-131516401(-)$1	1	138	177	12.8925

#PSSM
g : 0.16	f : 0.16	c : 0.11	d : 0.11	e : 0.09	= : 0.09	i : 0.05	: : 0.03	b : 0.03	[ : 0.03	# : 0.03	! : 0.01	$ : 0.01	
c : 0.16	f : 0.16	g : 0.15	d : 0.13	e : 0.09	= : 0.09	i : 0.07	b : 0.03	" : 0.03	! : 0.01	# : 0.01	
g : 0.15	f : 0.13	= : 0.11	c : 0.11	d : 0.11	[ : 0.09	e : 0.07	" : 0.07	i : 0.07	! : 0.03	# : 0.01	
g : 0.15	" : 0.11	= : 0.11	d : 0.11	f : 0.09	e : 0.07	c : 0.07	i : 0.07	! : 0.07	a : 0.05	$ : 0.01	[ : 0.01	# : 0.01	
g : 0.15	= : 0.11	c : 0.11	f : 0.11	[ : 0.09	! : 0.09	" : 0.07	d : 0.07	i : 0.07	$ : 0.03	e : 0.03	# : 0.01	
! : 0.15	g : 0.13	c : 0.13	= : 0.11	[ : 0.07	i : 0.07	a : 0.05	e : 0.05	f : 0.05	" : 0.03	$ : 0.03	d : 0.03	b : 0.01	# : 0.01	
c : 0.24	= : 0.11	g : 0.11	! : 0.09	d : 0.07	i : 0.07	[ : 0.05	e : 0.05	$ : 0.03	a : 0.03	" : 0.03	b : 0.01	# : 0.01	f : 0.01	
c : 0.26	= : 0.11	[ : 0.11	g : 0.07	f : 0.05	# : 0.05	e : 0.05	! : 0.05	$ : 0.03	b : 0.03	d : 0.03	i : 0.03	" : 0.03	a : 0.01	
c : 0.28	= : 0.11	b : 0.09	g : 0.07	e : 0.07	! : 0.07	f : 0.05	# : 0.05	d : 0.03	i : 0.03	" : 0.03	a : 0.01	$ : 0.01	[ : 0.01	
c : 0.24	= : 0.11	g : 0.09	# : 0.07	d : 0.07	f : 0.05	b : 0.05	e : 0.05	! : 0.05	" : 0.05	x : 0.03	[ : 0.03	i : 0.01	a : 0.01	
# : 0.22	c : 0.18	" : 0.13	! : 0.11	g : 0.05	a : 0.05	x : 0.03	f : 0.03	= : 0.03	[ : 0.03	d : 0.03	e : 0.01	^ : 0.01	
# : 0.18	c : 0.18	" : 0.15	! : 0.07	[ : 0.07	f : 0.05	g : 0.05	x : 0.03	a : 0.03	b : 0.03	d : 0.03	= : 0.01	e : 0.01	^ : 0.01	
# : 0.16	c : 0.15	" : 0.09	b : 0.09	e : 0.07	d : 0.07	f : 0.05	a : 0.05	[ : 0.05	x : 0.03	! : 0.03	s : 0.03	= : 0.01	^ : 0.01	g : 0.01	
[ : 0.20	# : 0.15	d : 0.15	c : 0.13	! : 0.05	b : 0.05	e : 0.05	x : 0.03	s : 0.03	= : 0.01	" : 0.01	a : 0.01	f : 0.01	^ : 0.01	g : 0.01	
c : 0.47	d : 0.22	e : 0.05	x : 0.03	! : 0.03	s : 0.03	= : 0.01	r : 0.01	[ : 0.01	f : 0.01	^ : 0.01	b : 0.01	g : 0.01	
c : 0.43	d : 0.22	e : 0.05	b : 0.05	x : 0.03	s : 0.03	= : 0.01	a : 0.01	r : 0.01	! : 0.01	f : 0.01	^ : 0.01	[ : 0.01	g : 0.01	
c : 0.41	d : 0.18	o : 0.09	e : 0.05	x : 0.03	b : 0.03	s : 0.03	= : 0.01	r : 0.01	f : 0.01	^ : 0.01	l : 0.01	a : 0.01	[ : 0.01	
o : 0.35	n : 0.30	m : 0.07	d : 0.07	x : 0.03	l : 0.03	s : 0.03	r : 0.01	c : 0.01	^ : 0.01	a : 0.01	
o : 0.35	n : 0.30	m : 0.11	l : 0.09	x : 0.03	s : 0.03	r : 0.01	c : 0.01	^ : 0.01	
o : 0.35	n : 0.30	m : 0.11	l : 0.09	x : 0.03	s : 0.03	r : 0.01	^ : 0.01	c : 0.01	
o : 0.35	n : 0.30	m : 0.11	l : 0.07	x : 0.03	c : 0.03	s : 0.03	r : 0.01	^ : 0.01	
o : 0.35	n : 0.30	c : 0.11	d : 0.05	x : 0.03	s : 0.03	m : 0.03	r : 0.01	l : 0.01	^ : 0.01	
c : 0.35	o : 0.26	d : 0.16	x : 0.03	a : 0.03	e : 0.03	b : 0.03	r : 0.01	^ : 0.01	] : 0.01	
c : 0.47	d : 0.22	e : 0.07	b : 0.07	x : 0.03	= : 0.01	] : 0.01	f : 0.01	^ : 0.01	a : 0.01	g : 0.01	
c : 0.47	d : 0.22	] : 0.07	e : 0.07	b : 0.03	= : 0.01	2 : 0.01	f : 0.01	^ : 0.01	3 : 0.01	g : 0.01	
c : 0.20	d : 0.16	3 : 0.13	] : 0.11	2 : 0.07	e : 0.07	4 : 0.05	f : 0.03	g : 0.03	b : 0.03	= : 0.01	a : 0.01	^ : 0.01	
3 : 0.22	c : 0.20	d : 0.09	2 : 0.07	e : 0.07	] : 0.07	f : 0.05	4 : 0.05	b : 0.05	g : 0.03	= : 0.01	^ : 0.01	
3 : 0.24	c : 0.15	4 : 0.09	a : 0.09	f : 0.07	] : 0.05	g : 0.05	e : 0.05	2 : 0.05	d : 0.05	= : 0.01	b : 0.01	^ : 0.01	
c : 0.22	3 : 0.15	] : 0.11	4 : 0.09	f : 0.07	= : 0.05	g : 0.05	2 : 0.05	d : 0.05	b : 0.03	i : 0.03	a : 0.01	e : 0.01	
c : 0.24	4 : 0.09	= : 0.09	b : 0.09	2 : 0.07	d : 0.07	i : 0.07	f : 0.05	g : 0.05	3 : 0.05	] : 0.03	e : 0.03	
c : 0.28	4 : 0.11	= : 0.09	b : 0.07	i : 0.07	f : 0.05	3 : 0.05	2 : 0.05	g : 0.03	a : 0.03	] : 0.03	d : 0.03	e : 0.03	
c : 0.26	g : 0.13	] : 0.11	= : 0.09	3 : 0.07	4 : 0.07	i : 0.07	b : 0.03	a : 0.03	e : 0.03	f : 0.03	d : 0.01	
g : 0.13	c : 0.13	2 : 0.11	4 : 0.11	= : 0.09	3 : 0.09	] : 0.07	i : 0.07	a : 0.05	e : 0.03	f : 0.03	b : 0.01	d : 0.01	
g : 0.13	2 : 0.13	= : 0.11	] : 0.09	a : 0.09	3 : 0.07	c : 0.07	i : 0.07	e : 0.05	4 : 0.05	d : 0.03	f : 0.03	b : 0.01	
g : 0.15	d : 0.13	= : 0.11	] : 0.11	f : 0.09	3 : 0.07	c : 0.07	i : 0.07	e : 0.05	2 : 0.05	4 : 0.03	b : 0.01	
g : 0.18	f : 0.16	d : 0.13	= : 0.11	e : 0.07	c : 0.07	i : 0.07	3 : 0.05	2 : 0.05	4 : 0.03	a : 0.01	
g : 0.18	d : 0.16	f : 0.16	c : 0.13	= : 0.11	e : 0.07	i : 0.07	3 : 0.03	] : 0.01	2 : 0.01	
g : 0.18	d : 0.18	f : 0.16	e : 0.11	= : 0.11	c : 0.09	i : 0.05	3 : 0.01	2 : 0.01	7 : 0.01	] : 0.01	
f : 0.15	c : 0.13	: : 0.11	e : 0.09	d : 0.09	g : 0.09	2 : 0.07	= : 0.05	3 : 0.03	8 : 0.01	5 : 0.01	0 : 0.01	] : 0.01	a : 0.01	i : 0.01	7 : 0.01	b : 0.01	

#score	749.7562496898072
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_CDS_m3_run1.txt

#BEAR
""ddddqqqqqqqqdddd3	chr6:99848491-99848749(-)$1	258	22	41	16.0989
ffffffqqqqqqqqfffff	chr11:66391338-66391604(+)$1	266	176	195	14.1155
ffffffqqqqqqqqfffff	chr11:66391277-66391538(+)$1	261	237	256	14.1155
d[ddddqqqqqqqqdddd]	chr2:132044608-132044884(+)$1	276	203	222	15.9189
::ddddqqqqqqqqdddd:	chr6:109702652-109702980(-)$1	328	217	236	13.3978

#otherMatches

#Seq PSSM
AAGUUCAGUAGUCAGGAUG	chr6:99848491-99848749(-)$1	258	22	41	16.0989
AGCUUUGUUAUAUGGGAGC	chr11:66391338-66391604(+)$1	266	176	195	14.1155
AGCUUUGUUAUAUGGGAGC	chr11:66391277-66391538(+)$1	261	237	256	14.1155
GGAGGGAACGUCAACCCUG	chr2:132044608-132044884(+)$1	276	203	222	15.9189
AAGUACCCAUGUAUGUACC	chr6:109702652-109702980(-)$1	328	217	236	13.3978

#DB
..((((........)))).	chr6:99848491-99848749(-)$1	1	22	41	16.0989
((((((........)))))	chr11:66391338-66391604(+)$1	1	176	195	14.1155
((((((........)))))	chr11:66391277-66391538(+)$1	1	237	256	14.1155
(.((((........)))).	chr2:132044608-132044884(+)$1	1	203	222	15.9189
..((((........)))).	chr6:109702652-109702980(-)$1	1	217	236	13.3978

#PSSM
f : 0.40	" : 0.20	d : 0.20	: : 0.20	
f : 0.40	" : 0.20	[ : 0.20	: : 0.20	
d : 0.60	f : 0.40	
d : 0.60	f : 0.40	
d : 0.60	f : 0.40	
d : 0.60	f : 0.40	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.60	f : 0.40	
d : 0.60	f : 0.40	
d : 0.60	f : 0.40	
d : 0.60	f : 0.40	
f : 0.40	3 : 0.20	] : 0.20	: : 0.20	

#score	73.6467019369
#seq	5
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_UTR_m1_run2.txt

#BEAR
fccc[a[==========cccrrrrrrrrrccc]=======	chr1:203764779-203765030(+)$1	251	24	64	12.7232
hhhh[a"""ccc[a"""cccmmmmccc22a]ccc]ahhhh	chr5:179921604-179921863(+)$1	259	61	101	16.5627
ddeeeee[dddd[a"""cccmmmmccc333a]dddd22ee	chr3:41281088-41281351(+)$1	263	206	246	17.3517
$a[dddd[eeeee[ccccccnnnnnccc]ccc]eeeeedd	chr17:46051772-46052129(+)$1	357	272	312	11.3825
cc[dddd[ddddzzzzzzzzzzzzzzzzzdddddddd]cc	chr19:54972731-54972959(+)$1	228	168	208	13.0380
gggg!!dddd[ccc!!bboooooobb22ccc]dddd22gg	chr17:25635435-25635708(+)$1	273	226	266	17.4718
ddd####dddd[ccc!!cccmmmmccc]cccdddd333dd	chr5:179048268-179048515(-)$1	247	188	228	16.1329
eeeeiiiiiiiiibb[ddddmmmmdddd333bb]iiiiii	chr8:110346478-110346728(+)$1	250	180	220	12.8771
fff!!ccc[dddd[bb[cccmmmmccc333bb]dddd]cc	chr19:49606309-49606566(+)$1	257	115	155	15.1898
ffffffdddd[ccc[a[cccmmmmccca]cccdddd22ff	chr16:31201578-31201815(+)$1	237	175	215	16.0503
d[hhhhhhhh!!ccc[cccooooooccc]ccc]hhhhhhh	chr15:91446141-91446421(+)$1	280	16	56	13.0381
i####eeeeedddd"""ccclllccc333dddd22eeeee	chr2:17934125-17934390(-)$1	265	144	184	13.9572
======$$$$$ccc[eeeeeaooooooa]eeeeeccc===	chr16:10479850-10480144(+)$1	294	121	161	11.4471
ggggg[dddd[bb$$$$$ddddlllddddbb]dddd]ggg	chr11:122932366-122932611(-)$1	245	88	128	12.7236
hhhh[a"""ccc[a"""cccmmmmccc22a]ccc]ahhhh	chr5:179921540-179921804(+)$1	264	125	165	16.5627
eeeeiiiiiiiiibb[ddddmmmmdddd333bb]iiiiii	chr8:110346528-110346753(+)$1	225	130	170	12.8771
ggg####ccc[ccc!!eeeeellleeeeeccc]cccgggg	chr7:5569352-5569622(-)$1	270	126	166	14.0931
[ccc"""eeeee!!ffffffmmmmffffff]eeeee333c	chr19:2270118-2270390(+)$1	272	103	143	12.1409
gggg!!dddd[ccc!!bboooooobb22ccc]dddd22gg	chr17:25635508-25635767(+)$1	259	153	193	17.4718
cc[dddd[ddddzzzzzzzzzzzzzzzzzdddddddd]cc	chr19:54972759-54972990(+)$1	231	140	180	13.0380
gggg!!dddd[ccc!!bboooooobb22ccc]dddd22gg	chr17:25635567-25635798(+)$1	231	94	134	17.4718

#otherMatches

#Seq PSSM
UGCUAGUGCUGCUGCUGCUGGGAGGACGACGGACGGCAGC	chr1:203764779-203765030(+)$1	251	24	64	12.7232
CGGGCGGGACUGGUAUGGUGGUUCCACAGGGCAGACCCCG	chr5:179921604-179921863(+)$1	259	61	101	16.5627
UCCUUUUUGGUCGAGGAGUAACAAUACAAAUGGAUUUUGG	chr3:41281088-41281351(+)$1	263	206	246	17.3517
CAGCGAGCAGGUGUGUGUGGGUCCUCCACCACUCACCUCU	chr17:46051772-46052129(+)$1	357	272	312	11.3825
GCUCACGUCAUGUUGCCUUCUCUUUUCUUUGUGUGUGUGU	chr19:54972731-54972959(+)$1	228	168	208	13.0380
AAGUGAUUAUCUCAAAGGGAGAUGCCAAUGGAGUAACAAU	chr17:25635435-25635708(+)$1	273	226	266	17.4718
GCUUUUGUUGAACUUGAAUCAGAAGAUGAAGUCAAAUUGG	chr5:179048268-179048515(-)$1	247	188	228	16.1329
CAUUUCGUCGCUGGGAAGGGACGGCCCUCGCCCGCGGUGA	chr8:110346478-110346728(+)$1	250	180	220	12.8771
GGAUUGGUGAGGGCGGACAGGUUUCUGAGGCCUCCCUAGC	chr19:49606309-49606566(+)$1	257	115	155	15.1898
GCAUGCGUGCUCUUUGAUAUAUUGGUACUGAGGUAUGUGC	chr16:31201578-31201815(+)$1	237	175	215	16.0503
CAGCUCGGCCGACUGGGCCCGGAGCGGCGCGGAGGCCGGG	chr15:91446141-91446421(+)$1	280	16	56	13.0381
AGGUAAUACUGUGAAAAUUCUUAGAGCAAUCAUUUGGUGU	chr2:17934125-17934390(-)$1	265	144	184	13.9572
CGCUCUAGGUACGUUGGGGCCGGGCGAGUGUCCUGCGAGA	chr16:10479850-10480144(+)$1	294	121	161	11.4471
GCGUGGCGGGGGAGGGUUGCUGCAUCGGUUUGCCUGGCGC	chr11:122932366-122932611(-)$1	245	88	128	12.7236
CGGGCGGGACUGGUAUGGUGGUUCCACAGGGCAGACCCCG	chr5:179921540-179921804(+)$1	264	125	165	16.5627
CAUUUCGUCGCUGGGAAGGGACGGCCCUCGCCCGCGGUGA	chr8:110346528-110346753(+)$1	225	130	170	12.8771
GGGGCCUGGCUUCCUGCCGCGCGCCGCGGGGACGCCUCCG	chr7:5569352-5569622(-)$1	270	126	166	14.0931
GUUGGGGGCGGGGUCGGCCUUGGGGGGCUGGUCCGCGGAC	chr19:2270118-2270390(+)$1	272	103	143	12.1409
AAGUGAUUAUCUCAAAGGGAGAUGCCAAUGGAGUAACAAU	chr17:25635508-25635767(+)$1	259	153	193	17.4718
GCUCACGUCAUGUUGCCUUCUCUUUUCUUUGUGUGUGUGU	chr19:54972759-54972990(+)$1	231	140	180	13.0380
AAGUGAUUAUCUCAAAGGGAGAUGCCAAUGGAGUAACAAU	chr17:25635567-25635798(+)$1	231	94	134	17.4718

#DB
((((.(.(((((((((((((.........))).)))))))	chr1:203764779-203765030(+)$1	1	24	64	12.7232
((((.(...(((.(...(((....)))..).))).)))))	chr5:179921604-179921863(+)$1	1	61	101	16.5627
(((((((.((((.(...(((....)))...).))))..))	chr3:41281088-41281351(+)$1	1	206	246	17.3517
.(.((((.(((((.((((((.....))).))).)))))))	chr17:46051772-46052129(+)$1	1	272	312	11.3825
((.((((.((((.................)))))))).))	chr19:54972731-54972959(+)$1	1	168	208	13.0380
((((..((((.(((..((......))..))).))))..))	chr17:25635435-25635708(+)$1	1	226	266	17.4718
(((....((((.(((..(((....))).)))))))...))	chr5:179048268-179048515(-)$1	1	188	228	16.1329
(((((((((((((((.((((....))))...)).))))))	chr8:110346478-110346728(+)$1	1	180	220	12.8771
(((..(((.((((.((.(((....)))...)).)))).))	chr19:49606309-49606566(+)$1	1	115	155	15.1898
((((((((((.(((.(.(((....)))).)))))))..))	chr16:31201578-31201815(+)$1	1	175	215	16.0503
(.((((((((..(((.(((......))).))).)))))))	chr15:91446141-91446421(+)$1	1	16	56	13.0381
(....(((((((((...(((...)))...))))..)))))	chr2:17934125-17934390(-)$1	1	144	184	13.9572
((((((.....(((.((((((......).)))))))))))	chr16:10479850-10480144(+)$1	1	121	161	11.4471
(((((.((((.((.....((((...)))))).)))).)))	chr11:122932366-122932611(-)$1	1	88	128	12.7236
((((.(...(((.(...(((....)))..).))).)))))	chr5:179921540-179921804(+)$1	1	125	165	16.5627
(((((((((((((((.((((....))))...)).))))))	chr8:110346528-110346753(+)$1	1	130	170	12.8771
(((....(((.(((..(((((...)))))))).)))))))	chr7:5569352-5569622(-)$1	1	126	166	14.0931
.(((...(((((..((((((....)))))).)))))...)	chr19:2270118-2270390(+)$1	1	103	143	12.1409
((((..((((.(((..((......))..))).))))..))	chr17:25635508-25635767(+)$1	1	153	193	17.4718
((.((((.((((.................)))))))).))	chr19:54972759-54972990(+)$1	1	140	180	13.0380
((((..((((.(((..((......))..))).))))..))	chr17:25635567-25635798(+)$1	1	94	134	17.4718

#PSSM
g : 0.23	f : 0.14	d : 0.14	h : 0.09	c : 0.09	e : 0.09	$ : 0.04	i : 0.04	= : 0.04	[ : 0.04	
g : 0.23	c : 0.19	h : 0.09	d : 0.09	e : 0.09	f : 0.09	a : 0.04	[ : 0.04	# : 0.04	= : 0.04	
g : 0.23	h : 0.14	e : 0.14	[ : 0.14	c : 0.09	f : 0.09	d : 0.04	# : 0.04	= : 0.04	
g : 0.19	h : 0.14	e : 0.14	d : 0.14	# : 0.14	c : 0.09	! : 0.04	f : 0.04	= : 0.04	
! : 0.19	[ : 0.14	d : 0.14	# : 0.14	i : 0.09	e : 0.04	f : 0.04	h : 0.04	= : 0.04	g : 0.04	" : 0.04	
a : 0.14	d : 0.14	! : 0.14	e : 0.09	# : 0.09	i : 0.09	c : 0.04	f : 0.04	h : 0.04	= : 0.04	[ : 0.04	" : 0.04	
d : 0.38	" : 0.14	e : 0.09	# : 0.09	i : 0.09	[ : 0.04	c : 0.04	h : 0.04	$ : 0.04	
d : 0.28	[ : 0.19	" : 0.09	i : 0.09	c : 0.09	e : 0.09	= : 0.04	h : 0.04	$ : 0.04	
d : 0.42	e : 0.14	" : 0.09	i : 0.09	= : 0.04	[ : 0.04	h : 0.04	$ : 0.04	c : 0.04	
d : 0.47	c : 0.14	e : 0.14	i : 0.09	= : 0.04	h : 0.04	$ : 0.04	
d : 0.28	[ : 0.28	c : 0.09	e : 0.09	i : 0.09	= : 0.04	! : 0.04	$ : 0.04	
c : 0.38	d : 0.23	e : 0.09	i : 0.09	= : 0.04	[ : 0.04	! : 0.04	b : 0.04	
c : 0.38	[ : 0.14	z : 0.09	i : 0.09	d : 0.09	= : 0.04	e : 0.04	b : 0.04	! : 0.04	
c : 0.38	a : 0.14	[ : 0.09	z : 0.09	b : 0.09	= : 0.04	d : 0.04	$ : 0.04	! : 0.04	
" : 0.19	! : 0.19	c : 0.14	b : 0.14	z : 0.09	[ : 0.09	= : 0.04	$ : 0.04	f : 0.04	
! : 0.23	" : 0.19	[ : 0.14	z : 0.09	= : 0.04	c : 0.04	b : 0.04	a : 0.04	e : 0.04	$ : 0.04	f : 0.04	
" : 0.19	b : 0.14	c : 0.09	z : 0.09	d : 0.09	[ : 0.09	e : 0.09	= : 0.04	! : 0.04	$ : 0.04	f : 0.04	
c : 0.47	b : 0.14	z : 0.09	d : 0.09	e : 0.09	$ : 0.04	f : 0.04	
c : 0.47	o : 0.14	d : 0.14	z : 0.09	e : 0.09	f : 0.04	
c : 0.42	o : 0.19	d : 0.14	z : 0.09	e : 0.09	f : 0.04	
m : 0.42	o : 0.19	z : 0.09	r : 0.04	n : 0.04	l : 0.04	a : 0.04	d : 0.04	e : 0.04	
m : 0.42	o : 0.23	z : 0.09	l : 0.09	r : 0.04	n : 0.04	d : 0.04	
m : 0.42	o : 0.23	l : 0.14	z : 0.09	r : 0.04	n : 0.04	
m : 0.42	o : 0.23	z : 0.09	l : 0.09	r : 0.04	n : 0.04	c : 0.04	
c : 0.33	b : 0.14	z : 0.09	d : 0.09	o : 0.09	r : 0.04	n : 0.04	l : 0.04	e : 0.04	f : 0.04	
c : 0.42	b : 0.14	d : 0.14	z : 0.09	r : 0.04	o : 0.04	e : 0.04	f : 0.04	
c : 0.38	2 : 0.14	d : 0.14	z : 0.09	r : 0.04	3 : 0.04	o : 0.04	e : 0.04	f : 0.04	
2 : 0.23	3 : 0.14	d : 0.14	c : 0.09	z : 0.09	a : 0.09	r : 0.04	] : 0.04	e : 0.04	f : 0.04	
3 : 0.23	] : 0.19	c : 0.19	2 : 0.09	z : 0.09	r : 0.04	d : 0.04	e : 0.04	f : 0.04	
c : 0.42	3 : 0.19	d : 0.14	a : 0.09	e : 0.04	b : 0.04	f : 0.04	
c : 0.42	] : 0.14	d : 0.14	3 : 0.09	b : 0.09	a : 0.04	e : 0.04	
c : 0.33	] : 0.23	d : 0.19	b : 0.14	e : 0.09	
d : 0.47	] : 0.23	c : 0.09	b : 0.09	e : 0.09	
d : 0.47	c : 0.14	e : 0.14	] : 0.09	= : 0.04	h : 0.04	2 : 0.04	
d : 0.47	] : 0.09	e : 0.09	i : 0.09	c : 0.09	= : 0.04	h : 0.04	2 : 0.04	
d : 0.42	e : 0.14	a : 0.09	i : 0.09	c : 0.09	= : 0.04	3 : 0.04	h : 0.04	
2 : 0.23	h : 0.14	d : 0.14	e : 0.09	3 : 0.09	i : 0.09	= : 0.04	c : 0.04	] : 0.04	g : 0.04	
2 : 0.23	h : 0.14	] : 0.14	= : 0.09	e : 0.09	3 : 0.09	i : 0.09	g : 0.09	
g : 0.23	h : 0.14	c : 0.14	= : 0.09	e : 0.09	d : 0.09	i : 0.09	f : 0.04	3 : 0.04	
g : 0.23	c : 0.19	h : 0.14	= : 0.09	e : 0.09	d : 0.09	i : 0.09	f : 0.04	

#score	303.6026781969855
#seq	21
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_UTR_m1_run1.txt

#BEAR
:cccooooooccc	chr11:2152964-2153172(-)$1	208	177	190	11.6289
ddddooooooddd	chr2:70505337-70505565(+)$1	228	92	105	9.6239
&cccooooooccc	chr10:75008684-75008950(-)$1	266	65	78	11.3714
:cccooooooccc	chr11:2152713-2152918(-)$1	205	2	15	11.6289
!cccooooooccc	chr16:18801507-18801724(-)$1	217	23	36	11.5613
ggggooooooggg	chr17:7215567-7215793(+)$1	226	79	92	9.4467
====oooooo===	chr12:51325296-51325560(+)$1	264	71	84	9.5704
dd[aooooooa]d	chr19:2272928-2273165(+)$1	237	111	124	9.7443
bb[aooooooa]b	chr11:2152978-2153192(-)$1	214	101	114	9.4953
ddddooooooddd	chr1:43392062-43392303(-)$1	241	72	85	9.6239
:cccooooooccc	chr11:2152564-2152766(-)$1	202	74	87	11.6289
:cccooooooccc	chr11:2152748-2152977(-)$1	229	61	74	11.6289
:cccooooooccc	chr11:2152784-2153016(-)$1	232	21	34	11.6289
:cccooooooccc	chr11:2152609-2152815(-)$1	206	123	136	11.6289
[cccooooooccc	chr12:50156793-50157018(+)$1	225	132	145	11.4154
[a[aooooooa]a	chr14:39736211-39736458(+)$1	247	85	98	9.7229
!cccooooooccc	chr17:56167527-56167806(+)$1	279	122	135	11.5613
:cccooooooccc	chr11:2152695-2152898(-)$1	203	108	121	11.6289
:cccooooooccc	chr11:2152737-2152941(-)$1	204	25	38	11.6289
ddddooooooddd	chr5:150647631-150647848(+)$1	217	143	156	9.6239
:cccooooooccc	chr11:2152546-2152756(-)$1	210	64	77	11.6289
ddddooooooddd	chr22:43193150-43193445(-)$1	295	101	114	9.6239
:cccooooooccc	chr11:2152680-2152890(-)$1	210	100	113	11.6289
dcccooooooccc	chr1:16451339-16451593(-)$1	254	19	32	11.3844
cc[aooooooa]c	chr7:924162-924381(+)$1	219	199	212	10.3801
:cccooooooccc	chr11:2152484-2152692(-)$1	208	42	55	11.6289
:cccooooooccc	chr11:2152480-2152684(-)$1	204	34	47	11.6289
iiiiooooooiii	chr8:11700934-11701184(-)$1	250	59	72	9.5266
ddddooooooddd	chr2:70505665-70505942(+)$1	277	35	48	9.6239
ddddooooooddd	chr17:20905973-20906249(-)$1	276	235	248	9.6239
ddddooooooddd	chr1:33789897-33790160(-)$1	263	129	142	9.6239
:cccooooooccc	chr11:2152663-2152870(-)$1	207	80	93	11.6289
:cccooooooccc	chr3:10192771-10193021(+)$1	250	9	22	11.6289
dd[aooooooa]d	chr16:2303464-2303729(-)$1	265	221	234	9.7443
bb[aooooooa]b	chr11:2153000-2153209(-)$1	209	118	131	9.4953
ddddooooooddd	chr3:150344786-150345051(+)$1	265	6	19	9.6239
:cccooooooccc	chr11:2152718-2152923(-)$1	205	7	20	11.6289
:cccooooooccc	chr11:2152592-2152805(-)$1	213	15	28	11.6289
:cccooooooccc	chr11:2152541-2152746(-)$1	205	54	67	11.6289
:cccooooooccc	chr11:2152619-2152822(-)$1	203	32	45	11.6289
:cccooooooccc	chr11:2152449-2152655(-)$1	206	5	18	11.6289
[cccooooooccc	chr17:47128037-47128339(+)$1	302	159	172	11.4154
##bboooooobb3	chr17:47128139-47128417(+)$1	278	122	135	8.7276
dcccooooooccc	chr11:60689925-60690238(+)$1	313	33	46	11.3844
:cccooooooccc	chr11:2153200-2153404(-)$1	204	53	66	11.6289
:cccooooooccc	chr11:2152634-2152839(-)$1	205	49	62	11.6289
:cccooooooccc	chr11:2153184-2153388(-)$1	204	37	50	11.6289
:cccooooooccc	chr11:2152639-2152844(-)$1	205	54	67	11.6289
:cccooooooccc	chr11:2152578-2152782(-)$1	204	90	103	11.6289
ddddooooooddd	chr17:56167684-56167959(+)$1	275	206	219	9.6239
:cccooooooccc	chr11:2152951-2153164(-)$1	213	169	182	11.6289
:cccooooooccc	chr1:214213523-214213816(+)$1	293	33	46	11.6289
:cccooooooccc	chr11:2152622-2152827(-)$1	205	37	50	11.6289
:cccooooooccc	chr11:2152582-2152784(-)$1	202	92	105	11.6289
:cccooooooccc	chr19:11256978-11257233(-)$1	255	16	29	11.6289
%cccooooooccc	chr3:127789973-127790278(+)$1	305	45	58	11.3722
:cccooooooccc	chr11:2152566-2152768(-)$1	202	76	89	11.6289
:cccooooooccc	chr11:2153156-2153361(-)$1	205	10	23	11.6289
:cccooooooccc	chr11:2152534-2152736(-)$1	202	44	57	11.6289
:cccooooooccc	chr17:56167126-56167377(+)$1	251	10	23	11.6289
:cccooooooccc	chr11:2152527-2152734(-)$1	207	42	55	11.6289

#otherMatches

#Seq PSSM
agcacacacaugc	chr11:2152964-2153172(-)$1	208	177	190	11.6289
agcuauuuaaagu	chr2:70505337-70505565(+)$1	228	92	105	9.6239
gugcaacacagca	chr10:75008684-75008950(-)$1	266	65	78	11.3714
agcacacacaugc	chr11:2152713-2152918(-)$1	205	2	15	11.6289
UAGCUCUCCCGCU	chr16:18801507-18801724(-)$1	217	23	36	11.5613
ggggaCCUGCCCC	chr17:7215567-7215793(+)$1	226	79	92	9.4467
ccuguaaucccag	chr12:51325296-51325560(+)$1	264	71	84	9.5704
AGAGACCCGACGC	chr19:2272928-2273165(+)$1	237	111	124	9.7443
gcacacacacgag	chr11:2152978-2153192(-)$1	214	101	114	9.4953
CCCCACUCUAGGG	chr1:43392062-43392303(-)$1	241	72	85	9.6239
agcacccaccugc	chr11:2152564-2152766(-)$1	202	74	87	11.6289
agcacacacaugc	chr11:2152748-2152977(-)$1	229	61	74	11.6289
agcacacacaugc	chr11:2152784-2153016(-)$1	232	21	34	11.6289
agcacccaccugc	chr11:2152609-2152815(-)$1	206	123	136	11.6289
UCCUCUACUCAGG	chr12:50156793-50157018(+)$1	225	132	145	11.4154
GCGCGAAGAAGGG	chr14:39736211-39736458(+)$1	247	85	98	9.7229
GGCAGGACAGUGU	chr17:56167527-56167806(+)$1	279	122	135	11.5613
agcacacacaugc	chr11:2152695-2152898(-)$1	203	108	121	11.6289
agcacacacaugc	chr11:2152737-2152941(-)$1	204	25	38	11.6289
ggugcaaucucac	chr5:150647631-150647848(+)$1	217	143	156	9.6239
agcacccaccugc	chr11:2152546-2152756(-)$1	210	64	77	11.6289
UUUAUUUUCUUGG	chr22:43193150-43193445(-)$1	295	101	114	9.6239
agcacacacaugc	chr11:2152680-2152890(-)$1	210	100	113	11.6289
GGUCUCGGAUGAC	chr1:16451339-16451593(-)$1	254	19	32	11.3844
GGUCAUUCUGGUC	chr7:924162-924381(+)$1	219	199	212	10.3801
CCCACAAAAUUGG	chr11:2152484-2152692(-)$1	208	42	55	11.6289
CCCACAAAAUUGG	chr11:2152480-2152684(-)$1	204	34	47	11.6289
GCCUUGGUUUGGG	chr8:11700934-11701184(-)$1	250	59	72	9.5266
UGACACCAAAGUU	chr2:70505665-70505942(+)$1	277	35	48	9.6239
CUGGCGUUCCCCA	chr17:20905973-20906249(-)$1	276	235	248	9.6239
UAACUCUUCCGUU	chr1:33789897-33790160(-)$1	263	129	142	9.6239
agcacacacaugc	chr11:2152663-2152870(-)$1	207	80	93	11.6289
uucaaacuccuga	chr3:10192771-10193021(+)$1	250	9	22	11.6289
GGCCUCUUCUGAC	chr16:2303464-2303729(-)$1	265	221	234	9.7443
gcacacacacgag	chr11:2153000-2153209(-)$1	209	118	131	9.4953
AUAGAUGUACCUG	chr3:150344786-150345051(+)$1	265	6	19	9.6239
agcacacacaugc	chr11:2152718-2152923(-)$1	205	7	20	11.6289
agcacacacaugc	chr11:2152592-2152805(-)$1	213	15	28	11.6289
agcacccaccugc	chr11:2152541-2152746(-)$1	205	54	67	11.6289
agcacacacaugc	chr11:2152619-2152822(-)$1	203	32	45	11.6289
CCCACAAAAUUGG	chr11:2152449-2152655(-)$1	206	5	18	11.6289
AUCAGUUAAAUGA	chr17:47128037-47128339(+)$1	302	159	172	11.4154
AUGCACUUUAGCU	chr17:47128139-47128417(+)$1	278	122	135	8.7276
GGUCUCUCAUGAC	chr11:60689925-60690238(+)$1	313	33	46	11.3844
AUGCAUCCCCGCA	chr11:2153200-2153404(-)$1	204	53	66	11.6289
agcacacacaugc	chr11:2152634-2152839(-)$1	205	49	62	11.6289
AUGCAUCCCCGCA	chr11:2153184-2153388(-)$1	204	37	50	11.6289
agcacacacaugc	chr11:2152639-2152844(-)$1	205	54	67	11.6289
agcacccaccugc	chr11:2152578-2152782(-)$1	204	90	103	11.6289
UCUCAGUGCAGAG	chr17:56167684-56167959(+)$1	275	206	219	9.6239
agcacacacaugc	chr11:2152951-2153164(-)$1	213	169	182	11.6289
AAGCUAAAAUGCU	chr1:214213523-214213816(+)$1	293	33	46	11.6289
agcacacacaugc	chr11:2152622-2152827(-)$1	205	37	50	11.6289
agcacccaccugc	chr11:2152582-2152784(-)$1	202	92	105	11.6289
ugcccgccuuggc	chr19:11256978-11257233(-)$1	255	16	29	11.6289
aagggacuugccu	chr3:127789973-127790278(+)$1	305	45	58	11.3722
agcacccaccugc	chr11:2152566-2152768(-)$1	202	76	89	11.6289
AUGCAUCCCCGCA	chr11:2153156-2153361(-)$1	205	10	23	11.6289
agcacccaccugc	chr11:2152534-2152736(-)$1	202	44	57	11.6289
GAGGGAUUGAUCU	chr17:56167126-56167377(+)$1	251	10	23	11.6289
agcacccaccugc	chr11:2152527-2152734(-)$1	207	42	55	11.6289

#DB
.(((......)))	chr11:2152964-2153172(-)$1	1	177	190	11.6289
((((......)))	chr2:70505337-70505565(+)$1	1	92	105	9.6239
.(((......)))	chr10:75008684-75008950(-)$1	1	65	78	11.3714
.(((......)))	chr11:2152713-2152918(-)$1	1	2	15	11.6289
.(((......)))	chr16:18801507-18801724(-)$1	1	23	36	11.5613
((((......)))	chr17:7215567-7215793(+)$1	1	79	92	9.4467
((((......)))	chr12:51325296-51325560(+)$1	1	71	84	9.5704
((.(......).)	chr19:2272928-2273165(+)$1	1	111	124	9.7443
((.(......).)	chr11:2152978-2153192(-)$1	1	101	114	9.4953
((((......)))	chr1:43392062-43392303(-)$1	1	72	85	9.6239
.(((......)))	chr11:2152564-2152766(-)$1	1	74	87	11.6289
.(((......)))	chr11:2152748-2152977(-)$1	1	61	74	11.6289
.(((......)))	chr11:2152784-2153016(-)$1	1	21	34	11.6289
.(((......)))	chr11:2152609-2152815(-)$1	1	123	136	11.6289
.(((......)))	chr12:50156793-50157018(+)$1	1	132	145	11.4154
.(.(......).)	chr14:39736211-39736458(+)$1	1	85	98	9.7229
.(((......)))	chr17:56167527-56167806(+)$1	1	122	135	11.5613
.(((......)))	chr11:2152695-2152898(-)$1	1	108	121	11.6289
.(((......)))	chr11:2152737-2152941(-)$1	1	25	38	11.6289
((((......)))	chr5:150647631-150647848(+)$1	1	143	156	9.6239
.(((......)))	chr11:2152546-2152756(-)$1	1	64	77	11.6289
((((......)))	chr22:43193150-43193445(-)$1	1	101	114	9.6239
.(((......)))	chr11:2152680-2152890(-)$1	1	100	113	11.6289
((((......)))	chr1:16451339-16451593(-)$1	1	19	32	11.3844
((.(......).)	chr7:924162-924381(+)$1	1	199	212	10.3801
.(((......)))	chr11:2152484-2152692(-)$1	1	42	55	11.6289
.(((......)))	chr11:2152480-2152684(-)$1	1	34	47	11.6289
((((......)))	chr8:11700934-11701184(-)$1	1	59	72	9.5266
((((......)))	chr2:70505665-70505942(+)$1	1	35	48	9.6239
((((......)))	chr17:20905973-20906249(-)$1	1	235	248	9.6239
((((......)))	chr1:33789897-33790160(-)$1	1	129	142	9.6239
.(((......)))	chr11:2152663-2152870(-)$1	1	80	93	11.6289
.(((......)))	chr3:10192771-10193021(+)$1	1	9	22	11.6289
((.(......).)	chr16:2303464-2303729(-)$1	1	221	234	9.7443
((.(......).)	chr11:2153000-2153209(-)$1	1	118	131	9.4953
((((......)))	chr3:150344786-150345051(+)$1	1	6	19	9.6239
.(((......)))	chr11:2152718-2152923(-)$1	1	7	20	11.6289
.(((......)))	chr11:2152592-2152805(-)$1	1	15	28	11.6289
.(((......)))	chr11:2152541-2152746(-)$1	1	54	67	11.6289
.(((......)))	chr11:2152619-2152822(-)$1	1	32	45	11.6289
.(((......)))	chr11:2152449-2152655(-)$1	1	5	18	11.6289
.(((......)))	chr17:47128037-47128339(+)$1	1	159	172	11.4154
..((......)).	chr17:47128139-47128417(+)$1	1	122	135	8.7276
((((......)))	chr11:60689925-60690238(+)$1	1	33	46	11.3844
.(((......)))	chr11:2153200-2153404(-)$1	1	53	66	11.6289
.(((......)))	chr11:2152634-2152839(-)$1	1	49	62	11.6289
.(((......)))	chr11:2153184-2153388(-)$1	1	37	50	11.6289
.(((......)))	chr11:2152639-2152844(-)$1	1	54	67	11.6289
.(((......)))	chr11:2152578-2152782(-)$1	1	90	103	11.6289
((((......)))	chr17:56167684-56167959(+)$1	1	206	219	9.6239
.(((......)))	chr11:2152951-2153164(-)$1	1	169	182	11.6289
.(((......)))	chr1:214213523-214213816(+)$1	1	33	46	11.6289
.(((......)))	chr11:2152622-2152827(-)$1	1	37	50	11.6289
.(((......)))	chr11:2152582-2152784(-)$1	1	92	105	11.6289
.(((......)))	chr19:11256978-11257233(-)$1	1	16	29	11.6289
.(((......)))	chr3:127789973-127790278(+)$1	1	45	58	11.3722
.(((......)))	chr11:2152566-2152768(-)$1	1	76	89	11.6289
.(((......)))	chr11:2153156-2153361(-)$1	1	10	23	11.6289
.(((......)))	chr11:2152534-2152736(-)$1	1	44	57	11.6289
.(((......)))	chr17:56167126-56167377(+)$1	1	10	23	11.6289
.(((......)))	chr11:2152527-2152734(-)$1	1	42	55	11.6289

#PSSM
: : 0.55	d : 0.21	[ : 0.04	! : 0.03	b : 0.03	& : 0.01	g : 0.01	= : 0.01	c : 0.01	i : 0.01	# : 0.01	% : 0.01	
c : 0.70	d : 0.18	b : 0.03	g : 0.01	= : 0.01	a : 0.01	i : 0.01	# : 0.01	
c : 0.68	d : 0.14	[ : 0.09	g : 0.01	= : 0.01	i : 0.01	b : 0.01	
c : 0.68	d : 0.14	a : 0.09	g : 0.01	= : 0.01	i : 0.01	b : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
c : 0.68	d : 0.14	a : 0.09	g : 0.01	= : 0.01	i : 0.01	b : 0.01	
c : 0.68	d : 0.14	] : 0.09	g : 0.01	= : 0.01	i : 0.01	b : 0.01	
c : 0.70	d : 0.18	b : 0.03	g : 0.01	= : 0.01	a : 0.01	i : 0.01	3 : 0.01	

#score	669.3193365404494
#seq	61
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_CDS_m1_run1.txt

#BEAR
ggggg[bb[fffffflllffffff]bbggggggg]ccc	chr15:67391105-67391425(+)$1	320	24	62	14.9170
eeeeggggggg[bbmmmmbb22ggggggg4444eeeee	chr11:66393897-66394139(+)$1	242	60	98	15.8097
e!!eeeeeabbcccmmmmccc]bb]a]eeeee4444ee	chr13:98829155-98829463(+)$1	308	140	178	16.9485
eeeee[bb[ccc[ammmma]cccbb22eeeee]cccab	chr13:98828521-98828768(+)$1	247	102	140	18.3666
ddd[ccc[ffffffmmmmffffff]cccdddd333bbc	chr20:32251549-32251799(-)$1	250	182	220	15.8267
eeeeggggggg[bbmmmmbb22ggggggg4444eeeee	chr11:66393823-66394093(+)$1	270	134	172	15.8097
eeeee[bb[ccc[ammmma]cccbb22eeeee]cccab	chr13:98828491-98828716(+)$1	225	132	170	18.3666
eeeee!!ccc[ccclllccc]ccc4444eeeee66666	chr4:140640572-140640837(+)$1	265	143	181	14.7357
eeeee[bbffffffmmmmffffff]bb]eeeee]a]dd	chr16:75281748-75282081(-)$1	333	104	142	18.6949
ggggggg[fffffflllffffff333ggggggg333dd	chr13:98828403-98828661(+)$1	258	98	136	15.8079

#otherMatches

#Seq PSSM
GUCCUACGCAUCCCCAGCGGGGGUCUGAGGGCCCACUG	chr15:67391105-67391425(+)$1	320	24	62	14.9170
AGCUCUCUGAUUACCGCCGUUUAUCAGAGUCGCAGCUU	chr11:66393897-66394139(+)$1	242	60	98	15.8097
CCUCGGUGCCACCCGCGGGGGCUGAGCCACUGUGUCGC	chr13:98829155-98829463(+)$1	308	140	178	16.9485
GCGCGGGGUGGCCCGGAAGUGCUCCAGCGCGCAGCUCU	chr13:98828521-98828768(+)$1	247	102	140	18.3666
CGGCUUCGCGGGGAGCCUUCCCCGGGGACCGGAAGCGC	chr20:32251549-32251799(-)$1	250	182	220	15.8267
AGCUCUCUGAUUACCGCCGUUUAUCAGAGUCGCAGCUU	chr11:66393823-66394093(+)$1	270	134	172	15.8097
GCGCGGGGUGGCCCGGAAGUGCUCCAGCGCGCAGCUCU	chr13:98828491-98828716(+)$1	225	132	170	18.3666
CUGGCAUGCCUGGGACUCCCUGGCUCAGGCCAGACAUG	chr4:140640572-140640837(+)$1	265	143	181	14.7357
ugguuuuccugucuaguaagauggagguaaucgugucu	chr16:75281748-75282081(-)$1	333	104	142	18.6949
UGGGGGUCUUCUGUGAAAUGGGACUUGCCCCCACCUUC	chr13:98828403-98828661(+)$1	258	98	136	15.8079

#DB
(((((.((.((((((...)))))).))))))))).)))	chr15:67391105-67391425(+)$1	1	24	62	14.9170
(((((((((((.((....))..)))))))....)))))	chr11:66393897-66394139(+)$1	1	60	98	15.8097
(..(((((((((((....))).)).).)))))....))	chr13:98829155-98829463(+)$1	1	140	178	16.9485
(((((.((.(((.(....).)))))..))))).)))))	chr13:98828521-98828768(+)$1	1	102	140	18.3666
(((.(((.((((((....)))))).)))))))...)))	chr20:32251549-32251799(-)$1	1	182	220	15.8267
(((((((((((.((....))..)))))))....)))))	chr11:66393823-66394093(+)$1	1	134	172	15.8097
(((((.((.(((.(....).)))))..))))).)))))	chr13:98828491-98828716(+)$1	1	132	170	18.3666
(((((..(((.(((...))).)))....))))).....	chr4:140640572-140640837(+)$1	1	143	181	14.7357
(((((.((((((((....)))))).)).))))).).))	chr16:75281748-75282081(-)$1	1	104	142	18.6949
(((((((.((((((...))))))...)))))))...))	chr13:98828403-98828661(+)$1	1	98	136	15.8079

#PSSM
e : 0.70	g : 0.20	d : 0.10	
e : 0.60	g : 0.20	! : 0.10	d : 0.10	
e : 0.60	g : 0.20	! : 0.10	d : 0.10	
e : 0.70	g : 0.20	[ : 0.10	
e : 0.50	g : 0.40	c : 0.10	
[ : 0.40	g : 0.30	e : 0.10	c : 0.10	! : 0.10	
b : 0.40	g : 0.30	e : 0.10	c : 0.10	! : 0.10	
b : 0.40	g : 0.20	[ : 0.20	e : 0.10	c : 0.10	
[ : 0.30	f : 0.30	g : 0.20	a : 0.10	c : 0.10	
f : 0.40	c : 0.30	g : 0.20	b : 0.10	
f : 0.40	g : 0.20	c : 0.20	b : 0.10	[ : 0.10	
f : 0.40	c : 0.40	[ : 0.20	
f : 0.40	b : 0.20	c : 0.20	[ : 0.20	
f : 0.40	b : 0.20	c : 0.20	a : 0.20	
m : 0.70	l : 0.20	f : 0.10	
m : 0.70	l : 0.30	
m : 0.70	l : 0.30	
m : 0.70	l : 0.10	c : 0.10	f : 0.10	
f : 0.40	b : 0.20	c : 0.20	a : 0.20	
f : 0.40	b : 0.20	c : 0.20	] : 0.20	
f : 0.40	c : 0.30	2 : 0.20	] : 0.10	
f : 0.40	c : 0.30	2 : 0.20	] : 0.10	
f : 0.40	c : 0.30	g : 0.20	b : 0.10	
f : 0.30	b : 0.30	g : 0.20	c : 0.10	3 : 0.10	
] : 0.40	g : 0.20	b : 0.20	4 : 0.10	3 : 0.10	
b : 0.20	g : 0.20	2 : 0.20	a : 0.10	c : 0.10	4 : 0.10	3 : 0.10	
g : 0.30	b : 0.20	2 : 0.20	] : 0.10	c : 0.10	4 : 0.10	
g : 0.40	e : 0.30	c : 0.10	4 : 0.10	] : 0.10	
e : 0.50	g : 0.40	d : 0.10	
e : 0.50	g : 0.20	4 : 0.20	d : 0.10	
e : 0.50	g : 0.20	4 : 0.20	d : 0.10	
e : 0.50	g : 0.20	4 : 0.20	d : 0.10	
4 : 0.30	g : 0.20	] : 0.20	e : 0.20	3 : 0.10	
e : 0.20	c : 0.20	3 : 0.20	g : 0.10	4 : 0.10	6 : 0.10	] : 0.10	
e : 0.20	c : 0.20	3 : 0.20	] : 0.10	4 : 0.10	6 : 0.10	a : 0.10	
c : 0.30	e : 0.20	4 : 0.10	b : 0.10	6 : 0.10	] : 0.10	3 : 0.10	
e : 0.30	a : 0.20	d : 0.20	c : 0.10	b : 0.10	6 : 0.10	
e : 0.30	c : 0.20	b : 0.20	d : 0.20	6 : 0.10	

#score	165.28388518641998
#seq	10
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_CDS_m2_run1.txt

#BEAR
ccc####ccc[ddddmmmmdddd]ccc333ccc]	chr16:23490038-23490345(-)$1	307	252	286	15.1261
cc"""ccc!!eeeeemmmmeeeee22cccccc]d	chr17:2266100-2266374(+)$1	274	7	41	13.9854
GG=============mmmm=============cc	chr19:19453126-19453450(+)$1	324	155	189	12.2170
e::ccc[ccceeeeemmmmeeeee4444ccc22c	chr16:4871320-4871604(-)$1	284	128	162	12.0112
$$bbddddccc[ddddllldddd]ccc4444ddd	chr17:42400590-42400864(-)$1	274	104	138	10.3072
gggg####bb[ddddmmmmdddd]bb22gggggg	chr21:46912486-46912713(+)$1	227	54	88	13.7432
dd!!ffffff!!cccmmmmccc22ffffff22dd	chr21:46914353-46914591(+)$1	238	197	231	10.8144
ddd!!ccc"""ddddmmmmddddccc]dddd]dd	chr9:140346764-140347055(-)$1	291	27	61	13.4304
ccceeeee"""ddddmmmmdddd]eeeee]ccc8	chr19:39123032-39123263(+)$1	231	151	185	12.7946
!!ggggggga[ddddmmmmdddd]a]ggggggg2	chr21:40720269-40720487(-)$1	218	165	199	14.5755
:::iiiiiiiiicccmmmmccc333iiiiiiiii	chr16:31097354-31097631(-)$1	277	66	100	10.7875
bb[ccc[ccceeeeemmmmeeeee]cccccc]bb	chr9:116999853-117000108(+)$1	255	34	68	13.0349
ggggggccc[eeeeemmmmeeeee22ccc]gggg	chr7:23571268-23571560(-)$1	292	88	122	13.7518
cc!!bb[gggggggammmma]ggggggg]bb]cc	chr14:104145788-104146083(+)$1	295	121	155	11.5998
e"""bb$$$$$ddddllldddd4444bb333eee	chr17:33463062-33463382(-)$1	320	120	154	10.8630
gggg[dddd"""cccmmmmcccdddd333ggggg	chr17:79974573-79974797(+)$1	224	178	212	12.7456
dd[ccc!!bb!!cccmmmmccc22bb22ccc]dd	chr5:94849032-94849380(-)$1	348	309	343	12.3328
"dddd[dddd[ddddmmmmdddd]dddd]dddde	chr10:119133656-119133967(-)$1	311	164	198	11.8465
dbb[dddd[ccccccmmmmccc22cccdddd]bb	chr17:43011871-43012152(-)$1	281	160	194	10.5880
gggccc[bb[eeeeemmmmeeeeebb]ccc:ccc	chr17:80011002-80011234(+)$1	232	112	146	11.7256
fff[bb[ccc[ddddmmmmdddd]ccc333bb]f	chr3:49161939-49162192(-)$1	253	76	110	13.8902
FFFggggggg[cccammmma]ccc22ggggggg:	chr14:105916453-105916731(+)$1	278	219	253	10.7646
###eeeee!!eeeeemmmmeeeee333eeeee33	chr20:30137026-30137279(+)$1	253	128	162	13.4879
gggg[bb####ddddmmmmddddbb]ggggggg:	chr3:183884280-183884532(+)$1	252	132	166	12.4753
:ddddccc!!eeeeemmmmeeeee4444ccc]dd	chr10:102740804-102741047(+)$1	243	101	135	12.7715
"""bb$$$$$eeeeemmmmeeeee333bb]ffff	chr12:120636230-120636475(-)$1	245	77	111	12.8086
ffffff$$$$$ddddmmmmdddd333ffffff]d	chr20:3193798-3194099(+)$1	301	154	188	13.0807
"""ddddccc[accclllccc]accc]dddd444	chr7:2414122-2414368(+)$1	246	133	167	9.7216
"""dddd[gggggggmmmmggggggg333dddd]	chr15:70387748-70388016(-)$1	268	77	111	12.2201
:ggggggg"""cccooooooccc22gggggggFF	chr9:116151851-116152110(-)$1	259	35	69	9.4732
cc[ccc[ccceeeeemmmmeeeee]ccc]ccccc	chr19:39924122-39924380(-)$1	258	106	140	13.7620
c[ccc[bb"""ddddnnnnndddd333bb]ccc]	chr1:26799863-26800128(+)$1	265	200	234	10.8685
ccc$$$$$gggggggmmmmggggggg22cccggg	chr8:22424401-22424659(+)$1	258	113	147	11.6018
:gggggggddddcccmmmmccc]dddd]gggggg	chr6:52441441-52441697(-)$1	256	47	81	10.7091
!!ccc[ccc[eeeeemmmmeeeee333ccc]ccc	chr5:132159092-132159329(-)$1	237	37	71	14.6115
fffff[a!!bbddddmmmmdddd22bb333a]ff	chr16:90086073-90086371(+)$1	298	126	160	13.2835
bb[a[ffffffddddmmmmdddd]ffffff22a]	chr20:32661448-32661725(+)$1	277	75	109	11.7569
dddd####gggggggmmmmgggggggdddd]ccc	chr12:6439514-6439821(-)$1	307	209	243	11.0130
iiiiii!!cccddddmmmmdddd]ccc>>>>>>>	chr16:28845470-28845767(+)$1	297	191	225	13.2575
"ffffff[bbccccccmmmmccc333ccc22bb]	chr7:99754489-99754779(-)$1	290	14	48	10.0776
ffffeeeee[eeeeemmmmeeeee]eeeee]fff	chr19:55751345-55751676(-)$1	331	129	163	11.0074
dddccc[ccc[ddddmmmmddddccc]ccc7777	chr9:130884413-130884748(-)$1	335	30	64	11.9291
%%%ggggggg[ddddmmmmdddd22ggggggg]e	chr19:18271914-18272215(+)$1	301	120	154	12.9232
[bb[eeeeebb[ddddllldddd]bb333eeeee	chr17:80045807-80046069(-)$1	262	108	142	9.7232
c!!ggggggg[ddddmmmmdddd22ggggggg22	chr14:23443136-23443513(-)$1	377	230	264	14.4053
!a[ccc!!bb[ddddlllddddbb22ccc]a22d	chr11:803004-803285(-)$1	281	137	171	11.3048
ccc[bb[ccceeeeemmmmeeeee4444ccc]bb	chr17:79953707-79953996(+)$1	289	164	198	13.4123
ddd[ccc####ddddnnnnndddd]ccc]ddddd	chr20:62571959-62572215(-)$1	256	109	143	10.1341
####a!!a[eeeeemmmmeeeee]a22aeeeeeb	chr18:657886-658169(+)$1	283	218	252	11.0068
fcccccc####ddddmmmmdddd666666ccc]c	chr17:7126076-7126305(+)$1	229	79	113	12.2918
ggggg!!ccc[eeeeellleeeee22ccc22ggg	chr5:175956068-175956348(-)$1	280	19	53	11.7641
"bb[ggggggg[cccmmmmcccggggggg]bb88	chr3:52727310-52727557(+)$1	247	25	59	11.3812
gggggg!!gggggggmmmmggggggg4444gggg	chr9:137308868-137309150(+)$1	282	1	35	13.0711
:eeeeea!!eeeeeammmma]eeeee22a4444e	chr3:38175363-38175615(-)$1	252	211	245	10.9286
!!bb!!dddd!!cccmmmmccc22dddd22bbdd	chr3:49166446-49166729(-)$1	283	148	182	10.5589

#otherMatches

#Seq PSSM
GGAUCAUGGCCUUGGAGGUCCAAAGCCUCUUCCU	chr16:23490038-23490345(-)$1	307	252	286	15.1261
GUCACACUGUCUGUCUCCUGGCAGCAAGUACUAC	chr17:2266100-2266374(+)$1	274	7	41	13.9854
GCUGGGCCUGGCUUCCUGAGAGGCCAGGCUCAGG	chr19:19453126-19453450(+)$1	324	155	189	12.2170
GAUGUGUGCUUCCUGUCCGUAGGAAACUGGCUCC	chr16:4871320-4871604(-)$1	284	128	162	12.0112
CUAGGGGUGGGGUCCUGAAAGGAGCCUUCAGACC	chr17:42400590-42400864(-)$1	274	104	138	10.3072
GGUCCGGGCAGGCGCGAGGGUGCGUGAUGACCCC	chr21:46912486-46912713(+)$1	227	54	88	13.7432
CCGCGGCUGCUGAGCUUGUGCUGUGCGGCCCAGG	chr21:46914353-46914591(+)$1	238	197	231	10.8144
ACGCAACCUUCGAGGACAUCCUUGGUAUGUGCCU	chr9:140346764-140347055(-)$1	291	27	61	13.4304
GUGGCAGCCAGGUCCGGGGGGACAGCUGCUCACC	chr19:39123032-39123263(+)$1	231	151	185	12.7946
UUCGUUUUCCGCGGGUCGUCCCGGGUGAGGACGC	chr21:40720269-40720487(-)$1	218	165	199	14.5755
AGAGGGUGUCUGCCAUAGCUGGGCUCAGGCAUCU	chr16:31097354-31097631(-)$1	277	66	100	10.7875
CAUGGAAGGUGGGGUCCUCACCCCUGCCUCCCUG	chr9:116999853-117000108(+)$1	255	34	68	13.0349
UAUUUAGUUCUGGGGAGCGCCUCGUCGACAUGAG	chr7:23571268-23571560(-)$1	292	88	122	13.7518
CUCCGGGAGGCGCCCCCAAGUGGCGCUUGCCAGG	chr14:104145788-104146083(+)$1	295	121	155	11.5998
UUUUCUCCCCUCCGGUACCUGGUCACAGUGCAGG	chr17:33463062-33463382(-)$1	320	120	154	10.8630
GCCGGUGGGUCUGGGGGCACCUCCCGUGGCGGCA	chr17:79974573-79974797(+)$1	224	178	212	12.7456
gccagguaugaugguguauaccuguaguccuagc	chr5:94849032-94849380(-)$1	348	309	343	12.3328
UGGAUUGGGAAGGGCAAAGGCUCAUUUCUGUCCU	chr10:119133656-119133967(-)$1	311	164	198	11.8465
UCUGUAGCCAGCCUCAGCCGAGCAGCUGCUGGAG	chr17:43011871-43012152(-)$1	281	160	194	10.5880
AGGACGAGGUGCCAGGUGCCUGGCCCAUGUUGCA	chr17:80011002-80011234(+)$1	232	112	146	11.7256
AGGGCAUGGCUGAAUUGGGGUUCUGCUUCUUGGC	chr3:49161939-49162192(-)$1	253	76	110	13.8902
CCCGGCCUGGUCUGCCGCAGCCAGUCCCGGGCCA	chr14:105916453-105916731(+)$1	278	219	253	10.7646
CAAGGAUGUCUGGCUCCGGGGCCAUCUCAUCUCA	chr20:30137026-30137279(+)$1	253	128	162	13.4879
GCCAAGUGCUGGGACCCAAGUCCACGUGGUUGCU	chr3:183884280-183884532(+)$1	252	132	166	12.4753
ACCUGAUCUUCUGUCCCAGGACAGCACUGAUACA	chr10:102740804-102741047(+)$1	243	101	135	12.7715
CUUGAUAUCACAGAGGAAACUCUGCAUUCUCGCU	chr12:120636230-120636475(-)$1	245	77	111	12.8086
UUCCCUGAUAAGUGCCGGAGUACCAGGGGGAGCC	chr20:3193798-3194099(+)$1	301	154	188	13.0807
UCUGAGCCUGUCCGCCCUGUGAGUAGCGCUCUGC	chr7:2414122-2414368(+)$1	246	133	167	9.7216
AGAUGCAGCGCCAUUAUGUGAUGGUGAGAUgcgg	chr15:70387748-70388016(-)$1	268	77	111	12.2201
UCCUGUUUCUAUGGCCCUUUCCGGUGAGCAGGGG	chr9:116151851-116152110(-)$1	259	35	69	9.4732
GGUGGCUCUGGGAGGGAGGCCUUCACAGCGCUCC	chr19:39924122-39924380(-)$1	258	106	140	13.7620
GCCACUGGACUCGGUGAUUAACCGUAACCUGUGU	chr1:26799863-26800128(+)$1	265	200	234	10.8685
AAGGGAAGGAGGCUUGGGAAGGCUUCAGCUUACC	chr8:22424401-22424659(+)$1	258	113	147	11.6018
CAUGCGGACAUCGGCUUCUGCCUGGUGCUCUGCG	chr6:52441441-52441697(-)$1	256	47	81	10.7091
AGGCUGGGGGUGGGUAGGAGCCCAGAGCCUGGGC	chr5:132159092-132159329(-)$1	237	37	71	14.6115
UGUGUGCGGGCGCCCCUCGGGGCUGGCGAGGGGC	chr16:90086073-90086371(+)$1	298	126	160	13.2835
CUGAAUCUAGAACUUGGGGAGGUGUCUGGAGAUG	chr20:32661448-32661725(+)$1	277	75	109	11.7569
GAGAUGUCGAGCUGCAUCAGUAGCUCUCUCGUCC	chr12:6439514-6439821(-)$1	307	209	243	11.0130
AGGCACCUCAGAUGUAUCCAUAUCCUGUAUCCAA	chr16:28845470-28845767(+)$1	297	191	225	13.2575
AUCUACCUGUCAUGCCCGAUGGCUCUGUGCUGCU	chr7:99754489-99754779(-)$1	290	14	48	10.0776
CGGGCUGGGGCUGGGCAUCCCUGGGUCCAGUCCU	chr19:55751345-55751676(-)$1	331	129	163	11.0074
GCUGCUGACAAGUGGGUGGCUGCUGUGGGCAAGG	chr9:130884413-130884748(-)$1	335	30	64	11.9291
AGCGGGUGGGAGGGCCCAGGCCUGGCUCACCCUG	chr19:18271914-18272215(+)$1	301	120	154	12.9232
UAGCUGGGGGGCGGGUGCUGCCCUCUGAUCUCCA	chr17:80045807-80046069(-)$1	262	108	142	9.7232
UUAUCACUUUGAGUGCUACCACUGUGAGGUGAGU	chr14:23443136-23443513(-)$1	377	230	264	14.4053
ACUGGCCCCACGGGAGGGUCCCUGAAGCCUGCCU	chr11:803004-803285(-)$1	281	137	171	11.3048
CGGGUGAAGCUGCCCUGCGGGGCACGACGCUGCA	chr17:79953707-79953996(+)$1	289	164	198	13.4123
GGGCGGGAUGUGGGCGCUUAGCCUCCCCUCCCCG	chr20:62571959-62572215(-)$1	256	109	143	10.1341
AAACGGAGGGUCCCAUUAGGGACGUGACUGGCGC	chr18:657886-658169(+)$1	283	218	252	11.0068
GUACCAUGAGAGGCAUCAUUGCUAAGGCGGUGAG	chr17:7126076-7126305(+)$1	229	79	113	12.2918
ACCAUGAGUUCCACACCAAGUGUGUUGACAAGUG	chr5:175956068-175956348(-)$1	280	19	53	11.7641
AGUGGACAGGGUAAGCUUUCUUUUCUGUUGGCAU	chr3:52727310-52727557(+)$1	247	25	59	11.3812
CACCCAGUGCUGGUGGGGAUGCUGGUGUUGUGGG	chr9:137308868-137309150(+)$1	282	1	35	13.0711
GACACUUUACUGGGCCCAGGCCCCAGGAAACUCA	chr3:38175363-38175615(-)$1	252	211	245	10.9286
GAUGAGGGCACAGGUCAAUGCCACUGCCGCCAGC	chr3:49166446-49166729(-)$1	283	148	182	10.5589

#DB
(((....(((.((((....)))).)))...))).	chr16:23490038-23490345(-)$1	1	252	286	15.1261
((...(((..(((((....)))))..)))))).)	chr17:2266100-2266374(+)$1	1	7	41	13.9854
(((((((((((((((....)))))))))))))((	chr19:19453126-19453450(+)$1	1	155	189	12.2170
)..(((.((((((((....)))))....)))..)	chr16:4871320-4871604(-)$1	1	128	162	12.0112
..(((((((((.((((...)))).)))....)))	chr17:42400590-42400864(-)$1	1	104	138	10.3072
((((....((.((((....)))).))..))))))	chr21:46912486-46912713(+)$1	1	54	88	13.7432
((..((((((..(((....)))..))))))..))	chr21:46914353-46914591(+)$1	1	197	231	10.8144
(((..(((...((((....))))))).)))).))	chr9:140346764-140347055(-)$1	1	27	61	13.4304
((((((((...((((....)))).))))).))).	chr19:39123032-39123263(+)$1	1	151	185	12.7946
..((((((((.((((....)))).).))))))).	chr21:40720269-40720487(-)$1	1	165	199	14.5755
...((((((((((((....)))...)))))))))	chr16:31097354-31097631(-)$1	1	66	100	10.7875
((.(((.((((((((....))))).)))))).))	chr9:116999853-117000108(+)$1	1	34	68	13.0349
(((((((((.(((((....)))))..))).))))	chr7:23571268-23571560(-)$1	1	88	122	13.7518
((..((.((((((((....).))))))).)).))	chr14:104145788-104146083(+)$1	1	121	155	11.5998
(...((.....((((...))))....))...)))	chr17:33463062-33463382(-)$1	1	120	154	10.8630
((((.((((...(((....)))))))...)))))	chr17:79974573-79974797(+)$1	1	178	212	12.7456
((.(((..((..(((....)))..))..))).))	chr5:94849032-94849380(-)$1	1	309	343	12.3328
.((((.((((.((((....)))).)))).)))))	chr10:119133656-119133967(-)$1	1	164	198	11.8465
)((.((((.((((((....)))..))))))).))	chr17:43011871-43012152(-)$1	1	160	194	10.5880
)))(((.((.(((((....))))))).))).(((	chr17:80011002-80011234(+)$1	1	112	146	11.7256
(((.((.(((.((((....)))).)))...)).)	chr3:49161939-49162192(-)$1	1	76	110	13.8902
)))(((((((.((((....).)))..))))))).	chr14:105916453-105916731(+)$1	1	219	253	10.7646
...(((((..(((((....)))))...)))))..	chr20:30137026-30137279(+)$1	1	128	162	13.4879
((((.((....((((....)))))).))))))).	chr3:183884280-183884532(+)$1	1	132	166	12.4753
.(((((((..(((((....)))))....))).))	chr10:102740804-102741047(+)$1	1	101	135	12.7715
...((.....(((((....)))))...)).))))	chr12:120636230-120636475(-)$1	1	77	111	12.8086
((((((.....((((....))))...)))))).)	chr20:3193798-3194099(+)$1	1	154	188	13.0807
...(((((((.((((...))).)))).))))...	chr7:2414122-2414368(+)$1	1	133	167	9.7216
...((((.(((((((....)))))))...)))).	chr15:70387748-70388016(-)$1	1	77	111	12.2201
.(((((((...(((......)))..)))))))((	chr9:116151851-116152110(-)$1	1	35	69	9.4732
((.(((.((((((((....))))).))).)))))	chr19:39924122-39924380(-)$1	1	106	140	13.7620
(.(((.((...((((.....))))...)).))).	chr1:26799863-26800128(+)$1	1	200	234	10.8685
(((.....(((((((....)))))))..))))))	chr8:22424401-22424659(+)$1	1	113	147	11.6018
.((((((((((((((....))).)))).))))))	chr6:52441441-52441697(-)$1	1	47	81	10.7091
..(((.(((.(((((....)))))...))).)))	chr5:132159092-132159329(-)$1	1	37	71	14.6115
(((((.(..((((((....))))..))...).))	chr16:90086073-90086371(+)$1	1	126	160	13.2835
((.(.((((((((((....)))).))))))..).	chr20:32661448-32661725(+)$1	1	75	109	11.7569
((((....(((((((....))))))))))).)))	chr12:6439514-6439821(-)$1	1	209	243	11.0130
((((((..(((((((....)))).))).......	chr16:28845470-28845767(+)$1	1	191	225	13.2575
.((((((.((((((((....)))...)))..)).	chr7:99754489-99754779(-)$1	1	14	48	10.0776
(((((((((.(((((....))))).))))).)))	chr19:55751345-55751676(-)$1	1	129	163	11.0074
((((((.(((.((((....))))))).)))....	chr9:130884413-130884748(-)$1	1	30	64	11.9291
...(((((((.((((....))))..))))))).)	chr19:18271914-18272215(+)$1	1	120	154	12.9232
.((.(((((((.((((...)))).))...)))))	chr17:80045807-80046069(-)$1	1	108	142	9.7232
(..(((((((.((((....))))..)))))))..	chr14:23443136-23443513(-)$1	1	230	264	14.4053
.(.(((..((.((((...))))))..))).)..)	chr11:803004-803285(-)$1	1	137	171	11.3048
(((.((.((((((((....)))))....))).))	chr17:79953707-79953996(+)$1	1	164	198	13.4123
(((.(((....((((.....)))).))).)))))	chr20:62571959-62572215(-)$1	1	109	143	10.1341
....(..(.(((((....))))).)..))))))(	chr18:657886-658169(+)$1	1	218	252	11.0068
(((((((....((((....))))......))).)	chr17:7126076-7126305(+)$1	1	79	113	12.2918
(((((..(((.(((((...)))))..)))..)))	chr5:175956068-175956348(-)$1	1	19	53	11.7641
.((.(((((((.(((....)))))))))).))..	chr3:52727310-52727557(+)$1	1	25	59	11.3812
((((((..(((((((....)))))))....))))	chr9:137308868-137309150(+)$1	1	1	35	13.0711
.((((((..((((((....).)))))..)....)	chr3:38175363-38175615(-)$1	1	211	245	10.9286
..((..((((..(((....)))..))))..))))	chr3:49166446-49166729(-)$1	1	148	182	10.5589

#PSSM
c : 0.16	g : 0.12	d : 0.12	" : 0.10	: : 0.09	f : 0.09	! : 0.07	e : 0.03	b : 0.03	# : 0.03	G : 0.01	$ : 0.01	F : 0.01	i : 0.01	% : 0.01	[ : 0.01	
g : 0.16	c : 0.14	d : 0.14	b : 0.09	f : 0.09	! : 0.07	" : 0.07	: : 0.03	# : 0.03	G : 0.01	$ : 0.01	F : 0.01	[ : 0.01	i : 0.01	% : 0.01	a : 0.01	e : 0.01	
g : 0.18	c : 0.12	d : 0.10	" : 0.09	b : 0.09	[ : 0.09	f : 0.09	! : 0.05	: : 0.03	# : 0.03	= : 0.01	F : 0.01	i : 0.01	% : 0.01	e : 0.01	
g : 0.21	c : 0.18	[ : 0.10	d : 0.09	f : 0.07	b : 0.05	! : 0.05	e : 0.05	# : 0.03	" : 0.03	i : 0.03	= : 0.01	$ : 0.01	a : 0.01	
c : 0.20	g : 0.18	d : 0.10	e : 0.09	b : 0.09	f : 0.07	# : 0.05	[ : 0.05	! : 0.03	i : 0.03	" : 0.01	= : 0.01	$ : 0.01	a : 0.01	
c : 0.21	g : 0.16	d : 0.09	e : 0.09	b : 0.09	f : 0.07	[ : 0.07	# : 0.05	! : 0.05	i : 0.03	$ : 0.03	= : 0.01	
[ : 0.14	c : 0.12	d : 0.12	g : 0.12	! : 0.10	e : 0.07	$ : 0.07	# : 0.05	f : 0.05	b : 0.03	a : 0.03	= : 0.01	i : 0.01	
c : 0.25	g : 0.14	! : 0.10	d : 0.09	# : 0.09	e : 0.07	$ : 0.07	f : 0.03	b : 0.03	[ : 0.03	= : 0.01	i : 0.01	a : 0.01	
c : 0.23	g : 0.18	! : 0.09	b : 0.09	" : 0.07	d : 0.07	$ : 0.05	# : 0.05	f : 0.03	[ : 0.03	e : 0.03	= : 0.01	i : 0.01	
c : 0.21	g : 0.16	b : 0.10	" : 0.09	[ : 0.07	! : 0.05	$ : 0.05	d : 0.05	# : 0.05	f : 0.03	e : 0.03	= : 0.01	a : 0.01	i : 0.01	
e : 0.25	[ : 0.21	g : 0.10	" : 0.09	c : 0.07	! : 0.05	# : 0.05	$ : 0.03	b : 0.03	= : 0.01	i : 0.01	d : 0.01	f : 0.01	
d : 0.38	e : 0.27	g : 0.09	c : 0.07	[ : 0.05	! : 0.05	= : 0.01	i : 0.01	" : 0.01	a : 0.01	
d : 0.40	e : 0.27	c : 0.21	g : 0.09	= : 0.01	
d : 0.40	e : 0.27	c : 0.21	g : 0.09	= : 0.01	
d : 0.40	e : 0.23	c : 0.18	g : 0.07	a : 0.05	= : 0.01	o : 0.01	m : 0.01	
m : 0.81	l : 0.05	d : 0.03	n : 0.03	o : 0.01	c : 0.01	e : 0.01	
m : 0.83	l : 0.10	n : 0.03	o : 0.01	
m : 0.83	l : 0.10	n : 0.03	o : 0.01	
m : 0.81	l : 0.05	d : 0.03	n : 0.03	c : 0.01	o : 0.01	e : 0.01	
d : 0.36	e : 0.25	c : 0.16	g : 0.07	a : 0.05	n : 0.03	= : 0.01	o : 0.01	m : 0.01	
d : 0.40	e : 0.25	c : 0.20	g : 0.07	] : 0.05	= : 0.01	
d : 0.40	e : 0.27	c : 0.20	g : 0.09	= : 0.01	] : 0.01	
d : 0.38	e : 0.27	g : 0.10	2 : 0.07	c : 0.05	= : 0.01	3 : 0.01	4 : 0.01	a : 0.01	] : 0.01	b : 0.01	
e : 0.25	] : 0.20	2 : 0.14	g : 0.10	c : 0.07	d : 0.07	3 : 0.05	b : 0.03	= : 0.01	4 : 0.01	6 : 0.01	
2 : 0.16	c : 0.14	3 : 0.12	g : 0.10	b : 0.09	4 : 0.07	] : 0.07	d : 0.07	f : 0.03	e : 0.03	a : 0.03	= : 0.01	6 : 0.01	
c : 0.20	g : 0.16	2 : 0.10	3 : 0.10	b : 0.09	4 : 0.07	d : 0.07	e : 0.05	f : 0.03	] : 0.03	= : 0.01	i : 0.01	6 : 0.01	
c : 0.23	g : 0.14	3 : 0.12	2 : 0.09	4 : 0.07	] : 0.07	d : 0.07	f : 0.05	e : 0.03	b : 0.03	= : 0.01	i : 0.01	6 : 0.01	
c : 0.20	g : 0.14	3 : 0.10	d : 0.10	4 : 0.09	2 : 0.07	f : 0.05	e : 0.05	b : 0.05	= : 0.01	i : 0.01	] : 0.01	> : 0.01	a : 0.01	6 : 0.01	
c : 0.25	g : 0.16	3 : 0.12	d : 0.07	e : 0.07	] : 0.07	f : 0.05	4 : 0.03	b : 0.03	= : 0.01	i : 0.01	> : 0.01	6 : 0.01	a : 0.01	2 : 0.01	
c : 0.21	g : 0.16	d : 0.12	] : 0.10	3 : 0.07	e : 0.07	4 : 0.05	f : 0.05	2 : 0.05	= : 0.01	i : 0.01	b : 0.01	> : 0.01	
c : 0.21	g : 0.20	d : 0.10	2 : 0.07	b : 0.07	e : 0.05	] : 0.05	4 : 0.03	f : 0.03	a : 0.03	= : 0.01	i : 0.01	3 : 0.01	: : 0.01	> : 0.01	7 : 0.01	
g : 0.23	c : 0.16	] : 0.14	2 : 0.07	d : 0.07	e : 0.07	b : 0.07	f : 0.05	4 : 0.03	= : 0.01	i : 0.01	> : 0.01	7 : 0.01	
g : 0.18	c : 0.16	d : 0.16	] : 0.09	b : 0.07	2 : 0.05	e : 0.05	f : 0.05	4 : 0.03	i : 0.01	3 : 0.01	F : 0.01	a : 0.01	> : 0.01	7 : 0.01	8 : 0.01	
d : 0.18	c : 0.14	g : 0.12	] : 0.09	e : 0.09	b : 0.07	f : 0.07	8 : 0.03	2 : 0.03	: : 0.03	i : 0.01	3 : 0.01	4 : 0.01	F : 0.01	> : 0.01	7 : 0.01	

#score	665.7601648664818
#seq	55
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_CDS_m1_run2.txt

#BEAR
iiiiiiiii^^^^^^^^^^^^^^^^^^^^^^^^iii	chrX:140994900-140995171(+)$1	271	95	131	42.1589
=========^^^^^^^^^^^^^^^^^^^^^^^^===	chrX:140994804-140995064(+)$1	260	191	227	42.9156
bbffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:128457626-128457998(+)$1	372	39	75	44.3578
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr16:15696267-15696601(-)$1	334	77	113	43.4088
ee[ccc[a^^^^^^^^^^^^^^^^^^^^^^^^^^a]	chr19:45912234-45912491(-)$1	257	82	118	44.0395
gg[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:85671690-85671975(-)$1	285	54	90	44.4932
::iiiiiiiii^^^^^^^^^^^^^^^^^^^^^iiii	chr19:45912059-45912320(-)$1	261	84	120	36.8166
ee[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]	chr13:39587725-39588008(-)$1	283	59	95	42.5304
bb[eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr17:26937612-26937937(-)$1	325	133	169	43.4411
::ggggggg^^^^^^^^^^^^^^^^^^^^ggggggg	chr3:99568178-99568418(+)$1	240	58	94	35.0654
::ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr5:176917483-176917826(-)$1	343	167	203	43.1805
bb[eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr17:26937529-26937805(-)$1	276	1	37	43.4411
nnccceeeee^^^^^^^^^^^^^^^^^^^^^^^eee	chr5:112227519-112227848(-)$1	329	85	121	39.6468
b[ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr13:39587112-39587378(-)$1	266	181	217	44.2411

#otherMatches

#Seq PSSM
GGAGGACUCCAUGUCUCCUCUCUACUUUCCUCAGAG	chrX:140994900-140995171(+)$1	271	95	131	42.1589
GGAGGACUCCAUGUCUCCUCUCUACUUUCCUCAGAG	chrX:140994804-140995064(+)$1	260	191	227	42.9156
GCUCUAGCUUACCUGUUUUUUAACCUCUUGAUUCCU	chr7:128457626-128457998(+)$1	372	39	75	44.3578
GAAUAUAUCCCUCCUCCUUuucuuucuccucuuccu	chr16:15696267-15696601(-)$1	334	77	113	43.4088
CAUCUUGCUGUUUUUCUUUCUUCGUCUUCUUUUUGG	chr19:45912234-45912491(-)$1	257	82	118	44.0395
CAAAACCAAAACCACUUCUUCUUUCAUACAUUUUCU	chr11:85671690-85671975(-)$1	285	54	90	44.4932
AUCUGUCCCUUUUCUUUUUUCCUCUUCUUCGUAGGG	chr19:45912059-45912320(-)$1	261	84	120	36.8166
CACCAAUUUAAUCAACUCCUCUGCUUUAUCCUCUGC	chr13:39587725-39588008(-)$1	283	59	95	42.5304
CCAUGAACUUCUUUCUUCUUUUCCAUCCUUUCUGUU	chr17:26937612-26937937(-)$1	325	133	169	43.4411
UCCUAAAUCUCUGUUCCUGUUUUCUUGUUGAUUUAG	chr3:99568178-99568418(+)$1	240	58	94	35.0654
ccucccugccucccuuccaucucuccuuccuuccac	chr5:176917483-176917826(-)$1	343	167	203	43.1805
CCAUGAACUUCUUUCUUCUUUUCCAUCCUUUCUGUU	chr17:26937529-26937805(-)$1	276	1	37	43.4411
UCUGCACAGCUUCCucuuuuucuuucuucuccuguu	chr5:112227519-112227848(-)$1	329	85	121	39.6468
CCGCUGCCACCUCCACAUCUCUCCCUCAUCCUAGCU	chr13:39587112-39587378(-)$1	266	181	217	44.2411

#DB
(((((((((........................)))	chrX:140994900-140995171(+)$1	1	95	131	42.1589
(((((((((........................)))	chrX:140994804-140995064(+)$1	1	191	227	42.9156
((((((((............................	chr7:128457626-128457998(+)$1	1	39	75	44.3578
(((................................)	chr16:15696267-15696601(-)$1	1	77	113	43.4088
((.(((.(..........................).	chr19:45912234-45912491(-)$1	1	82	118	44.0395
((.(((..............................	chr11:85671690-85671975(-)$1	1	54	90	44.4932
..(((((((((.....................))))	chr19:45912059-45912320(-)$1	1	84	120	36.8166
((.((............................)).	chr13:39587725-39588008(-)$1	1	59	95	42.5304
((.(((((.........................)))	chr17:26937612-26937937(-)$1	1	133	169	43.4411
..(((((((....................)))))))	chr3:99568178-99568418(+)$1	1	58	94	35.0654
..((((((............................	chr5:176917483-176917826(-)$1	1	167	203	43.1805
((.(((((.........................)))	chr17:26937529-26937805(-)$1	1	1	37	43.4411
..)))(((((.......................)))	chr5:112227519-112227848(-)$1	1	85	121	39.6468
(.((((((............................	chr13:39587112-39587378(-)$1	1	181	217	44.2411

#PSSM
b : 0.28	: : 0.21	e : 0.14	i : 0.07	= : 0.07	c : 0.07	g : 0.07	n : 0.07	
b : 0.21	: : 0.21	e : 0.14	i : 0.07	= : 0.07	c : 0.07	g : 0.07	n : 0.07	[ : 0.07	
[ : 0.35	f : 0.21	i : 0.14	c : 0.14	= : 0.07	g : 0.07	
f : 0.21	c : 0.21	i : 0.14	e : 0.14	= : 0.07	^ : 0.07	b : 0.07	g : 0.07	
f : 0.21	c : 0.21	i : 0.14	e : 0.14	= : 0.07	^ : 0.07	b : 0.07	g : 0.07	
f : 0.21	e : 0.21	i : 0.14	^ : 0.14	c : 0.14	= : 0.07	g : 0.07	
f : 0.21	^ : 0.21	e : 0.21	i : 0.14	= : 0.07	[ : 0.07	g : 0.07	
f : 0.21	^ : 0.21	e : 0.21	i : 0.14	= : 0.07	a : 0.07	g : 0.07	
^ : 0.64	i : 0.14	= : 0.07	g : 0.07	e : 0.07	
^ : 0.85	i : 0.07	e : 0.07	
^ : 0.92	i : 0.07	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.92	g : 0.07	
^ : 0.92	g : 0.07	
^ : 0.92	g : 0.07	
^ : 0.85	i : 0.07	g : 0.07	
^ : 0.42	e : 0.21	i : 0.14	= : 0.07	b : 0.07	g : 0.07	
^ : 0.35	e : 0.21	i : 0.14	= : 0.07	a : 0.07	b : 0.07	g : 0.07	
^ : 0.28	e : 0.21	i : 0.14	] : 0.14	= : 0.07	c : 0.07	g : 0.07	

#score	589.7374834291927
#seq	14
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_transcript_m3_run1.txt

#BEAR
[ffffffuuuuuuuuuuuuffffffdd	chr1:156280252-156280538(-)$1	286	67	94	23.8873
ddd[cccuuuuuuuuuuuucccdddd:	chr2:101622707-101622978(+)$1	271	2	29	22.8165
gggg[bbuuuuuuuuuuuubbgggggg	chr19:18652471-18652745(-)$1	274	127	154	24.1203
iiiiiiiuuuuuuuuuuuuiiiiiiii	chr17:45300773-45301014(+)$1	241	60	87	24.8386
ffffffwwwwwwwwwwwwwwffffff]	chr2:232577061-232577327(+)$1	266	84	111	23.7704
####bbuuuuuuuuuuuubb4444fff	chr15:85212837-85213123(-)$1	286	105	132	22.1842
c!!cccwwwwwwwwwwwwwwccc22cc	chr6:33257513-33257767(+)$1	254	130	157	24.2631
!ffffffuuuuuuuuuuuuffffff33	chr11:5290730-5290951(-)$1	221	68	95	24.6765
ddddddvvvvvvvvvvvvvdddd5555	chr3:184052576-184052888(+)$1	312	82	109	20.8771
ggggddddtttttttttttdddd]ggg	chr12:96259052-96259266(+)$1	214	36	63	22.3854
hhhhhhwwwwwwwwwwwwwwhhhhhhh	chr11:5269426-5269686(-)$1	260	7	34	21.8767
!!cccyyyyyyyyyyyyyyyycccddd	chr17:73034879-73035153(-)$1	274	72	99	21.3954
ff[cccvvvvvvvvvvvvvccc]ffff	chr2:68405977-68406224(-)$1	247	137	164	25.3919
ffffffyyyyyyyyyyyyyyyyfffff	chr2:98263760-98263987(+)$1	227	21	48	21.0705
======vvvvvvvvvvvvv========	chr20:17594281-17594576(-)$1	295	220	247	25.8823
======xxxxxxxxxxxxxxx======	chr14:70238506-70238774(+)$1	268	155	182	20.1956
========ttttttttttt========	chr1:150547230-150547495(-)$1	265	170	197	23.6778
[ffffffuuuuuuuuuuuuffffff22	chr1:150237735-150238019(-)$1	284	186	213	24.2933
ggggggguuuuuuuuuuuugggggggf	chr19:39220996-39221250(+)$1	254	169	196	24.7700
###dddduuuuuuuuuuuudddd22hh	chr10:70744604-70744850(+)$1	246	148	175	22.9686
b[dddduuuuuuuuuuuudddd]bb]f	chr17:49232911-49233123(+)$1	212	48	75	22.0422
ee[cccwwwwwwwwwwwwwwccceeee	chr3:49397399-49397679(-)$1	280	107	134	23.8908
!ccc[ccctttttttttttccc]cccg	chr6:160526854-160527107(+)$1	253	37	64	23.6956
ff[cccvvvvvvvvvvvvvccc]ffff	chr2:68405915-68406177(-)$1	262	90	117	25.3919
hhhhhhvvvvvvvvvvvvvhhhhhhhh	chr8:101715421-101715638(-)$1	217	28	55	22.4700
f[a!!auuuuuuuuuuuua22a]ffff	chr19:8381278-8381553(-)$1	275	114	141	23.2342
[a[cccvvvvvvvvvvvvvccc22a]a	chr19:56185507-56185774(+)$1	267	159	186	25.6501
!a[cccvvvvvvvvvvvvvccc]a22g	chr5:133493334-133493559(-)$1	225	98	125	25.7791
dd!!cccuuuuuuuuuuuuccc55555	chr19:40953689-40953971(-)$1	282	228	255	20.9135
======vvvvvvvvvvvvv========	chr3:156260710-156261033(-)$1	323	255	282	25.8823
"""ccctttttttttttccc4444ddd	chr1:155290191-155290493(+)$1	302	179	206	21.2851
iiiiiiiuuuuuuuuuuuuiiiiiiii	chr7:100486062-100486351(+)$1	289	9	36	24.8386
!ffffffuuuuuuuuuuuuffffff33	chr11:5290773-5290997(-)$1	224	114	141	24.6765
b[cccwwwwwwwwwwwwwwccc]bb>>	chr22:31303517-31303820(+)$1	303	38	65	23.0952
dddd[ccctttttttttttccc]dddd	chr11:18424415-18424661(+)$1	246	199	226	22.2115
ggggggguuuuuuuuuuuuggggggg:	chr6:34385214-34385423(-)$1	209	1	28	24.0262
##eeeeeuuuuuuuuuuuueeeee666	chrX:100604356-100604638(-)$1	282	122	149	23.0115
$$ddddyyyyyyyyyyyyyyyydddd2	chr22:36677282-36677531(-)$1	249	23	50	20.1614
c!!cccwwwwwwwwwwwwwwccc22cc	chr6:33257570-33257797(+)$1	227	73	100	24.2631
[eeeeewwwwwwwwwwwwwweeeee]c	chr10:106026953-106027276(+)$1	323	243	270	24.0526
[gggggggtttttttttttggggggg]	chr10:79795009-79795218(+)$1	209	27	54	23.4947
!!ddddvvvvvvvvvvvvvdddd333e	chr2:47388761-47389039(-)$1	278	202	229	24.7891
fff!!ccctttttttttttccc22fff	chr12:56435825-56436053(+)$1	228	58	85	22.8323
[eeeeewwwwwwwwwwwwwweeeee]a	chr17:34173809-34174038(+)$1	229	116	143	24.1130
========ttttttttttt========	chrX:12994307-12994581(+)$1	274	11	38	23.6778
ggggggwwwwwwwwwwwwwwggggggg	chrX:102930531-102930759(-)$1	228	41	68	24.7308
ggggggwwwwwwwwwwwwwwggggggg	chr6:32083315-32083602(-)$1	287	231	258	24.7308
[eeeeewwwwwwwwwwwwwweeeee]a	chr11:64084332-64084540(-)$1	208	19	46	24.1130
gggggccctttttttttttccc]gggg	chr17:76220293-76220547(+)$1	254	149	176	24.0730
a[fffffftttttttttttffffff]a	chr19:1148271-1148582(-)$1	311	84	111	22.8107
ggggggvvvvvvvvvvvvvgggggggg	chr8:101715381-101715620(-)$1	239	10	37	25.5899
gg[cccwwwwwwwwwwwwwwcccgggg	chr14:92583741-92584052(-)$1	311	215	242	24.8229
ggggggguuuuuuuuuuuugggggggI	chr1:20978612-20978835(-)$1	223	27	54	23.5277
!eeeeevvvvvvvvvvvvveeeee22a	chr12:6879052-6879265(+)$1	213	169	196	24.6680
ffffffwwwwwwwwwwwwwwffffff]	chr6:31605254-31605502(+)$1	248	18	45	23.7704
#eeeeewwwwwwwwwwwwwweeeee44	chr5:149829164-149829399(-)$1	235	23	50	23.9606
Feeeeevvvvvvvvvvvvveeeee:::	chr21:33039470-33039722(+)$1	252	21	48	21.1278
[eeeeewwwwwwwwwwwwwweeeee33	chr16:29821998-29822259(+)$1	261	210	237	24.3096
##ddddvvvvvvvvvvvvvdddd4444	chr7:148700585-148700858(-)$1	273	160	187	24.4475
!ffffffuuuuuuuuuuuuffffff22	chr9:127998695-127998949(-)$1	254	125	152	24.2833
c[fffffftttttttttttffffff22	chr11:1773918-1774210(-)$1	292	181	208	22.5922

#otherMatches

#Seq PSSM
ACCCAGGAGAACUGUGAGACCUGGGGU	chr1:156280252-156280538(-)$1	286	67	94	23.8873
GUUGUGGAAAAUAGAAUGCCCAGACCC	chr2:101622707-101622978(+)$1	271	2	29	22.8165
CUGGAGGACAUGGGACAACCCCCGGCG	chr19:18652471-18652745(-)$1	274	127	154	24.1203
AGGAGGGUGAAAUGCCCUUUCCUCCUA	chr17:45300773-45301014(+)$1	241	60	87	24.8386
UCUCCAGGUGAGGAAGAGGAUGGAGAU	chr2:232577061-232577327(+)$1	266	84	111	23.7704
UCACACUUUCAAAUUUUUGUACAUCAG	chr15:85212837-85213123(-)$1	286	105	132	22.1842
UGAUCCAGAAGAAGCUACAGGGAGAAG	chr6:33257513-33257767(+)$1	254	130	157	24.2631
CCCAGAGAUUUUUUGACAGCUUUGGAA	chr11:5290730-5290951(-)$1	221	68	95	24.6765
GGCUCCGUGAAGCAGAGGAGGAGUCUG	chr3:184052576-184052888(+)$1	312	82	109	20.8771
UUUUUAUUGAAAGCUUGCAAAUACAGA	chr12:96259052-96259266(+)$1	214	36	63	22.3854
UUUCGGCAAAGAAUUCACCCCUGAGGU	chr11:5269426-5269686(-)$1	260	7	34	21.8767
AUUAGACAAGAAAAAGUAUCCCUAUUG	chr17:73034879-73035153(-)$1	274	72	99	21.3954
GUUGAAUGUUUAGUUUUUCUUCUGCAU	chr2:68405977-68406224(-)$1	247	137	164	25.3919
guuuuguuuuUUGUUUUUUCUUCAGGA	chr2:98263760-98263987(+)$1	227	21	48	21.0705
UUGAUGCCAUUAAAACCAACGUUGGUG	chr20:17594281-17594576(-)$1	295	220	247	25.8823
GCUGCUGGACAGACACAUUAGAGCAGC	chr14:70238506-70238774(+)$1	268	155	182	20.1956
AAUCCUCCAAAAGGGAAAGGGAGGAUU	chr1:150547230-150547495(-)$1	265	170	197	23.6778
UGAUUUUGACUAAUAAAAAAGAAUUUG	chr1:150237735-150238019(-)$1	284	186	213	24.2933
GAAGGAUUCCUGCAGCAUCAUCUUUUU	chr19:39220996-39221250(+)$1	254	169	196	24.7700
AAUGUUUUUACUAUAAAAUGAGCUAAU	chr10:70744604-70744850(+)$1	246	148	175	22.9686
CUGUAGGCAAGUGAUUCACUGCUGUUU	chr17:49232911-49233123(+)$1	212	48	75	22.0422
UACUGGCCUUUUUCAUUUAUCUAUAAU	chr3:49397399-49397679(-)$1	280	107	134	23.8908
CGGCUGGUGAAUUCAAACAACCUGCCC	chr6:160526854-160527107(+)$1	253	37	64	23.6956
GUUGAAUGUUUAGUUUUUCUUCUGCAU	chr2:68405915-68406177(-)$1	262	90	117	25.3919
AUUUGUUUUUUUAACAUUUACAGAUUG	chr8:101715421-101715638(-)$1	217	28	55	22.4700
GCCCCCUUCCAUCAUCAUGUCGUCGCA	chr19:8381278-8381553(-)$1	275	114	141	23.2342
GCACCCACACAGACACAGAGGGAAGGG	chr19:56185507-56185774(+)$1	267	159	186	25.6501
AGGUACGCAAAGAGAACCAGUGGUGUG	chr5:133493334-133493559(-)$1	225	98	125	25.7791
AGGGGGCAAUAAAUGUUGAGCCAAGAG	chr19:40953689-40953971(-)$1	282	228	255	20.9135
ACGUUUAUUAAAAGGAAAAAAAUGUCU	chr3:156260710-156261033(-)$1	323	255	282	25.8823
GCGCGCAAAAUCUACAAGCGGAGAAAG	chr1:155290191-155290493(+)$1	302	179	206	21.2851
AUCCUGUACCUCUCACCUCACAGGAUG	chr7:100486062-100486351(+)$1	289	9	36	24.8386
CCCAGAGAUUUUUUGACAGCUUUGGAA	chr11:5290773-5290997(-)$1	224	114	141	24.6765
GUCCUAAAAGUUCAUCACAGGGUCUUU	chr22:31303517-31303820(+)$1	303	38	65	23.0952
GGGCAUUAUAUUAUUCAAUUAGAGCCU	chr11:18424415-18424661(+)$1	246	199	226	22.2115
GGGCCUCUGGAGUUAUAAUGAGGCCUG	chr6:34385214-34385423(-)$1	209	1	28	24.0262
UUUGGCAAGAAUGAAAUGGUGUCAUAA	chrX:100604356-100604638(-)$1	282	122	149	23.0115
AUGCCUACAAAGCUCUGAAUUCAGGUC	chr22:36677282-36677531(-)$1	249	23	50	20.1614
UGAUCCAGAAGAAGCUACAGGGAGAAG	chr6:33257570-33257797(+)$1	227	73	100	24.2631
AUAUUUUCCUUCACUAAUAUGAAUAAU	chr10:106026953-106027276(+)$1	323	243	270	24.0526
AGGUCUUGGAAAAUCACAGCAAGGCCA	chr10:79795009-79795218(+)$1	209	27	54	23.4947
AUUCUUCACUUUGAUUUUUAAGAUAAG	chr2:47388761-47389039(-)$1	278	202	229	24.7891
GGGAUCUCAUGCUAUAUAGGAGGGCCC	chr12:56435825-56436053(+)$1	228	58	85	22.8323
GAUCAGCGCAACCGACCAUACUGAUGA	chr17:34173809-34174038(+)$1	229	116	143	24.1130
GGCGGGUGGCUCUUCCUCACGCUCGCU	chrX:12994307-12994581(+)$1	274	11	38	23.6778
AUGUAUAUACCUGAAAACCCAUGCAUU	chrX:102930531-102930759(-)$1	228	41	68	24.7308
GGGGUGUUCACCUCUCUUCUCAUCCCU	chr6:32083315-32083602(-)$1	287	231	258	24.7308
CGGCCCAUCACUUGCUUCCCGGGCCAC	chr11:64084332-64084540(-)$1	208	19	46	24.1130
CCGCUCCUCCCUCAGAAAAAGGCAGUG	chr17:76220293-76220547(+)$1	254	149	176	24.0730
GGUUUUCUGGGGUGGGUGAAggagggu	chr19:1148271-1148582(-)$1	311	84	111	22.8107
AUUUGUUUUUUUAACAUUUACAGAUUG	chr8:101715381-101715620(-)$1	239	10	37	25.5899
GUCUGCAUUUUUUUAAACCAGCAAUUG	chr14:92583741-92584052(-)$1	311	215	242	24.8229
GGUUUUGUUUUGCUUUGUUUAAAGCCG	chr1:20978612-20978835(-)$1	223	27	54	23.5277
GUCAGGGUGGGUUUGAAGACCUGAAGC	chr12:6879052-6879265(+)$1	213	169	196	24.6680
AGGGCCGCCACCUCGAGAAGGGCCCUC	chr6:31605254-31605502(+)$1	248	18	45	23.7704
GACCUCGCCCCGUGACCUCAGAGGUAU	chr5:149829164-149829399(-)$1	235	23	50	23.9606
AAGUUUUAAUUUAGCUCAUGAACUACC	chr21:33039470-33039722(+)$1	252	21	48	21.1278
AGAGGCAGAGAAGAGAUGGAGUCUUAG	chr16:29821998-29822259(+)$1	261	210	237	24.3096
uaguccagauuuuuacagaggauacau	chr7:148700585-148700858(-)$1	273	160	187	24.4475
ACUUUUGUUAGGAAAAAAUUGAAAGAA	chr9:127998695-127998949(-)$1	254	125	152	24.2833
CCCAGCUGACAUGGAAAUACAGUUGUU	chr11:1773918-1774210(-)$1	292	181	208	22.5922

#DB
.((((((............))))))))	chr1:156280252-156280538(-)$1	1	67	94	23.8873
(((.(((............))))))).	chr2:101622707-101622978(+)$1	1	2	29	22.8165
((((.((............))))))))	chr19:18652471-18652745(-)$1	1	127	154	24.1203
(((((((............))))))))	chr17:45300773-45301014(+)$1	1	60	87	24.8386
((((((..............)))))).	chr2:232577061-232577327(+)$1	1	84	111	23.7704
....((............))....)))	chr15:85212837-85213123(-)$1	1	105	132	22.1842
(..(((..............)))..))	chr6:33257513-33257767(+)$1	1	130	157	24.2631
.((((((............))))))..	chr11:5290730-5290951(-)$1	1	68	95	24.6765
((((((.............))))....	chr3:184052576-184052888(+)$1	1	82	109	20.8771
((((((((...........)))).)))	chr12:96259052-96259266(+)$1	1	36	63	22.3854
((((((..............)))))))	chr11:5269426-5269686(-)$1	1	7	34	21.8767
..(((................))))))	chr17:73034879-73035153(-)$1	1	72	99	21.3954
((.(((.............))).))))	chr2:68405977-68406224(-)$1	1	137	164	25.3919
((((((................)))))	chr2:98263760-98263987(+)$1	1	21	48	21.0705
((((((.............))))))))	chr20:17594281-17594576(-)$1	1	220	247	25.8823
((((((...............))))))	chr14:70238506-70238774(+)$1	1	155	182	20.1956
((((((((...........))))))))	chr1:150547230-150547495(-)$1	1	170	197	23.6778
.((((((............))))))..	chr1:150237735-150238019(-)$1	1	186	213	24.2933
(((((((............))))))))	chr19:39220996-39221250(+)$1	1	169	196	24.7700
...((((............))))..))	chr10:70744604-70744850(+)$1	1	148	175	22.9686
(.((((............)))).)).)	chr17:49232911-49233123(+)$1	1	48	75	22.0422
((.(((..............)))))))	chr3:49397399-49397679(-)$1	1	107	134	23.8908
.(((.(((...........))).))))	chr6:160526854-160527107(+)$1	1	37	64	23.6956
((.(((.............))).))))	chr2:68405915-68406177(-)$1	1	90	117	25.3919
((((((.............))))))))	chr8:101715421-101715638(-)$1	1	28	55	22.4700
(.(..(............)..).))))	chr19:8381278-8381553(-)$1	1	114	141	23.2342
.(.(((.............)))..).)	chr19:56185507-56185774(+)$1	1	159	186	25.6501
.(.(((.............))).)..)	chr5:133493334-133493559(-)$1	1	98	125	25.7791
((..(((............))).....	chr19:40953689-40953971(-)$1	1	228	255	20.9135
((((((.............))))))))	chr3:156260710-156261033(-)$1	1	255	282	25.8823
...(((...........)))....)))	chr1:155290191-155290493(+)$1	1	179	206	21.2851
(((((((............))))))))	chr7:100486062-100486351(+)$1	1	9	36	24.8386
.((((((............))))))..	chr11:5290773-5290997(-)$1	1	114	141	24.6765
(.(((..............))).))..	chr22:31303517-31303820(+)$1	1	38	65	23.0952
((((.(((...........))).))))	chr11:18424415-18424661(+)$1	1	199	226	22.2115
(((((((............))))))).	chr6:34385214-34385423(-)$1	1	1	28	24.0262
..(((((............)))))...	chrX:100604356-100604638(-)$1	1	122	149	23.0115
..((((................)))).	chr22:36677282-36677531(-)$1	1	23	50	20.1614
(..(((..............)))..))	chr6:33257570-33257797(+)$1	1	73	100	24.2631
.(((((..............))))).)	chr10:106026953-106027276(+)$1	1	243	270	24.0526
.(((((((...........))))))).	chr10:79795009-79795218(+)$1	1	27	54	23.4947
..((((.............))))...)	chr2:47388761-47389039(-)$1	1	202	229	24.7891
(((..(((...........)))..)))	chr12:56435825-56436053(+)$1	1	58	85	22.8323
.(((((..............))))).)	chr17:34173809-34174038(+)$1	1	116	143	24.1130
((((((((...........))))))))	chrX:12994307-12994581(+)$1	1	11	38	23.6778
((((((..............)))))))	chrX:102930531-102930759(-)$1	1	41	68	24.7308
((((((..............)))))))	chr6:32083315-32083602(-)$1	1	231	258	24.7308
.(((((..............))))).)	chr11:64084332-64084540(-)$1	1	19	46	24.1130
((((((((...........))).))))	chr17:76220293-76220547(+)$1	1	149	176	24.0730
(.((((((...........)))))).)	chr19:1148271-1148582(-)$1	1	84	111	22.8107
((((((.............))))))))	chr8:101715381-101715620(-)$1	1	10	37	25.5899
((.(((..............)))))))	chr14:92583741-92584052(-)$1	1	215	242	24.8229
(((((((............)))))))(	chr1:20978612-20978835(-)$1	1	27	54	23.5277
.(((((.............)))))..)	chr12:6879052-6879265(+)$1	1	169	196	24.6680
((((((..............)))))).	chr6:31605254-31605502(+)$1	1	18	45	23.7704
.(((((..............)))))..	chr5:149829164-149829399(-)$1	1	23	50	23.9606
((((((.............)))))...	chr21:33039470-33039722(+)$1	1	21	48	21.1278
.(((((..............)))))..	chr16:29821998-29822259(+)$1	1	210	237	24.3096
..((((.............))))....	chr7:148700585-148700858(-)$1	1	160	187	24.4475
.((((((............))))))..	chr9:127998695-127998949(-)$1	1	125	152	24.2833
(.((((((...........))))))..	chr11:1773918-1774210(-)$1	1	181	208	22.5922

#PSSM
g : 0.16	[ : 0.13	! : 0.13	f : 0.11	# : 0.08	= : 0.08	d : 0.06	c : 0.04	i : 0.03	h : 0.03	b : 0.03	e : 0.01	" : 0.01	$ : 0.01	a : 0.01	F : 0.01	
f : 0.18	g : 0.18	e : 0.13	= : 0.08	[ : 0.08	d : 0.06	# : 0.06	! : 0.06	i : 0.03	h : 0.03	a : 0.03	c : 0.01	" : 0.01	$ : 0.01	
f : 0.18	g : 0.16	e : 0.13	d : 0.11	[ : 0.09	= : 0.08	! : 0.04	c : 0.04	i : 0.03	# : 0.03	h : 0.03	a : 0.01	" : 0.01	
c : 0.19	f : 0.16	g : 0.16	e : 0.13	d : 0.11	= : 0.08	! : 0.04	i : 0.03	h : 0.03	[ : 0.01	# : 0.01	
c : 0.21	f : 0.16	g : 0.13	e : 0.13	d : 0.11	= : 0.08	[ : 0.04	i : 0.03	h : 0.03	! : 0.03	b : 0.01	
c : 0.24	f : 0.16	e : 0.13	d : 0.11	g : 0.11	= : 0.08	b : 0.03	i : 0.03	h : 0.03	y : 0.01	a : 0.01	w : 0.01	
w : 0.24	v : 0.21	f : 0.11	c : 0.09	g : 0.06	u : 0.04	y : 0.04	i : 0.03	d : 0.03	= : 0.03	b : 0.01	x : 0.01	t : 0.01	e : 0.01	
u : 0.29	w : 0.24	v : 0.21	c : 0.06	y : 0.04	= : 0.03	f : 0.03	d : 0.01	x : 0.01	t : 0.01	g : 0.01	
u : 0.29	w : 0.24	v : 0.21	t : 0.18	y : 0.04	x : 0.01	
u : 0.29	w : 0.24	v : 0.21	t : 0.18	y : 0.04	x : 0.01	
u : 0.29	w : 0.24	v : 0.21	t : 0.18	y : 0.04	x : 0.01	
u : 0.29	w : 0.24	v : 0.21	t : 0.18	y : 0.04	x : 0.01	
u : 0.29	w : 0.24	v : 0.21	t : 0.18	y : 0.04	x : 0.01	
u : 0.29	w : 0.24	v : 0.21	t : 0.18	y : 0.04	x : 0.01	
u : 0.29	w : 0.24	v : 0.21	t : 0.18	y : 0.04	x : 0.01	
u : 0.29	w : 0.24	v : 0.21	t : 0.18	y : 0.04	x : 0.01	
u : 0.29	w : 0.24	v : 0.21	t : 0.18	y : 0.04	x : 0.01	
u : 0.29	w : 0.24	v : 0.21	t : 0.16	y : 0.04	x : 0.01	c : 0.01	
u : 0.24	w : 0.24	v : 0.21	t : 0.16	y : 0.04	b : 0.01	x : 0.01	d : 0.01	a : 0.01	c : 0.01	
w : 0.22	c : 0.19	f : 0.11	d : 0.09	g : 0.08	= : 0.06	y : 0.04	e : 0.04	b : 0.03	i : 0.03	x : 0.01	h : 0.01	2 : 0.01	
c : 0.24	f : 0.14	e : 0.13	g : 0.11	d : 0.09	= : 0.06	y : 0.04	i : 0.03	4 : 0.03	h : 0.03	b : 0.01	x : 0.01	2 : 0.01	
c : 0.26	f : 0.14	g : 0.13	e : 0.13	d : 0.09	= : 0.08	i : 0.03	4 : 0.03	h : 0.03	y : 0.03	a : 0.01	
f : 0.16	] : 0.14	g : 0.13	e : 0.13	d : 0.11	c : 0.08	= : 0.08	i : 0.03	4 : 0.03	h : 0.03	2 : 0.03	5 : 0.01	
f : 0.21	g : 0.16	e : 0.14	2 : 0.08	= : 0.08	d : 0.04	4 : 0.04	i : 0.03	5 : 0.03	h : 0.03	c : 0.03	b : 0.03	] : 0.01	a : 0.01	3 : 0.01	
f : 0.24	g : 0.18	e : 0.09	d : 0.08	2 : 0.08	= : 0.08	i : 0.03	5 : 0.03	h : 0.03	b : 0.03	c : 0.01	a : 0.01	6 : 0.01	3 : 0.01	: : 0.01	4 : 0.01	
g : 0.18	f : 0.13	d : 0.09	] : 0.09	= : 0.08	2 : 0.08	3 : 0.06	c : 0.04	h : 0.04	i : 0.03	5 : 0.03	4 : 0.03	e : 0.01	> : 0.01	6 : 0.01	: : 0.01	
g : 0.14	f : 0.13	= : 0.08	a : 0.08	d : 0.06	2 : 0.06	: : 0.04	] : 0.04	c : 0.04	3 : 0.04	h : 0.04	i : 0.03	5 : 0.03	e : 0.03	4 : 0.03	> : 0.01	6 : 0.01	I : 0.01	

#score	1438.3815115221112
#seq	61
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_transcript_m2_run1.txt

#BEAR
==========lll=======	chr7:5569897-5570152(-)$1	255	216	236	8.0663
fffffffooooooffffff:	chr16:88580965-88581214(+)$1	249	198	218	10.0143
gggggggooooooggggggg	chr1:109642821-109643028(+)$1	207	168	188	12.4240
========nnnnn=======	chr21:46576566-46576833(+)$1	267	244	264	7.8202
hhhhhhhoooooohhhhhhh	chr19:1421894-1422120(+)$1	226	74	94	9.8883
:a!!cccooooooccc22a:	chr11:65211942-65212201(+)$1	259	76	96	10.2779
[a[ddddoooooodddda]a	chr5:138614432-138614639(+)$1	207	184	204	11.4135
:ffffffooooooffffffe	chr21:47612164-47612445(-)$1	281	105	125	10.0305
gggggggooooooggggggg	chr19:2425991-2426267(-)$1	276	225	245	12.4240
=====[aooooooa======	chr1:16174697-16174964(+)$1	267	131	151	12.6039
fff[cccooooooccc]fff	chr13:92000575-92000842(+)$1	267	207	227	12.0326
fffff[aooooooa]fffff	chrX:152956442-152956714(+)$1	272	156	176	11.3304
dd[ddddooooooddddddd	chr7:98479360-98479572(+)$1	212	100	120	10.9794
hhhhhhhoooooohhhhhhh	chr19:3361222-3361443(+)$1	221	136	156	9.8883
gg!!cccooooooccc22gg	chr9:136131998-136132231(-)$1	233	124	144	12.6032
ddd[cccooooooccc]ddd	chr19:1415883-1416151(+)$1	268	181	201	11.7272
eee[cccooooooccceeee	chr16:89370571-89370819(-)$1	248	215	235	11.9477
dd[ddddooooooddddddd	chr7:98479338-98479545(+)$1	207	122	142	10.9794
gggggggooooooggggggg	chr1:109642923-109643137(+)$1	214	66	86	12.4240
eeeeeeeooooooeeeeehh	chr16:89023746-89024028(-)$1	282	193	213	10.6153
a!!ddddoooooodddd22a	chr9:136132879-136133108(-)$1	229	177	197	11.2370
:ffffffooooooffffffd	chr17:7480116-7480344(+)$1	228	115	135	10.0414
"""ddddoooooodddd22d	chr2:234184373-234184584(+)$1	211	156	176	11.0717
dd!!cccooooooccc333d	chr19:47732219-47732436(-)$1	217	129	149	12.3417
dd[ddddooooooddddddd	chr7:98479351-98479560(+)$1	209	109	129	10.9794
gggggggooooooggggggg	chr1:109642853-109643060(+)$1	207	136	156	12.4240
bb[ddddoooooodddd]bb	chr19:47731959-47732248(-)$1	289	163	183	10.4495
gggggggooooooggggggg	chrX:39953167-39953437(-)$1	270	25	45	12.4240
iiiiiiiooooooiiiiiii	chr15:66795118-66795350(-)$1	232	52	72	12.2752
####cccooooooccc]ddd	chr22:35738112-35738400(+)$1	288	137	157	11.9359
eeeee[aooooooa]eeeee	chr19:16188125-16188376(+)$1	251	174	194	11.3997
ggggg[aooooooa333ggg	chr22:19710374-19710612(+)$1	238	19	39	12.3949
ccc[cccooooooccccccD	chr4:1238687-1238948(-)$1	261	199	219	11.1183
!ffffffoooooofffffff	chr2:97559836-97560087(-)$1	251	66	86	11.0336
!dddd[bboooooobb]ddd	chr20:1165406-1165674(-)$1	268	158	178	8.8807
ggggg[aooooooa]ggggg	chr16:85627601-85627866(+)$1	265	82	102	12.5447
eee[cccooooooccc22ee	chr2:203155957-203156197(+)$1	240	194	214	11.8585
edddd[aooooooa]dddd:	chr12:98993341-98993554(+)$1	213	49	69	10.2144
gggggggooooooggggggg	chr1:109642906-109643108(+)$1	202	83	103	12.4240
cccddddoooooodddd]cc	chr22:50036172-50036399(-)$1	227	63	83	11.2467
c"""cccooooooccc22cc	chr11:122929983-122930200(-)$1	217	45	65	12.1401
c[eeeeeooooooeeeee]c	chr22:50040916-50041186(-)$1	270	105	125	11.1353
fffff[aooooooaffffff	chr1:32827795-32828062(-)$1	267	1	21	11.2912
"""ddddoooooodddd333	chr8:1788936-1789186(+)$1	250	201	221	11.4045
gggggggooooooggggggg	chr15:66795058-66795303(-)$1	245	183	203	12.4240
c[eeeeeooooooeeeee22	chr2:203141053-203141335(+)$1	282	228	248	10.6890
=====bboooooobb]====	chr19:1411641-1411894(+)$1	253	209	229	11.4124
eeee[bboooooobb]eeee	chrX:152954103-152954376(+)$1	273	182	202	10.4358
ee!!cccooooooccceeee	chr19:2199152-2199391(+)$1	239	154	174	12.1925
dffffffooooooffffffc	chr22:50010521-50010804(-)$1	283	196	216	10.9676
g"""cccooooooccc]ggg	chr3:186502553-186502782(+)$1	229	7	27	12.6662
ggddddaooooooa]dddd]	chr19:1416701-1416939(+)$1	238	20	40	11.3043
cc[a[bboooooobb]accc	chr19:1409165-1409386(+)$1	221	184	204	10.8429
gg[ccc[allla]ccc]ggg	chr12:123997699-123998012(-)$1	313	184	204	8.3111
!ffffffooooooffffff2	chr5:40832662-40832931(-)$1	269	52	72	10.9344

#otherMatches

#Seq PSSM
CUCCGGGGGUGCCGCUCUCG	chr7:5569897-5570152(-)$1	255	216	236	8.0663
ggguucuuuaagcaggaccu	chr16:88580965-88581214(+)$1	249	198	218	10.0143
UUUGAUCUUAUUUGAUCGGA	chr1:109642821-109643028(+)$1	207	168	188	12.4240
UGCUGCACUGUAUGUGUAGU	chr21:46576566-46576833(+)$1	267	244	264	7.8202
UUCCCGCGUUUGGGUGGGAA	chr19:1421894-1422120(+)$1	226	74	94	9.8883
AGGACUCUCAAAUGAGGACA	chr11:65211942-65212201(+)$1	259	76	96	10.2779
UGAGAGUGGAAUGACUCCUG	chr5:138614432-138614639(+)$1	207	184	204	11.4135
UCUGCUUGAGCAGGAGCAGC	chr21:47612164-47612445(-)$1	281	105	125	10.0305
CCCGGGUAUAGACACCUGGG	chr19:2425991-2426267(-)$1	276	225	245	12.4240
UGCGGGCGGCCAAGCCGCGC	chr1:16174697-16174964(+)$1	267	131	151	12.6039
UGUACGCGCGAGGGUGGGCG	chr13:92000575-92000842(+)$1	267	207	227	12.0326
GGCUCACACAAGGGGGAGCC	chrX:152956442-152956714(+)$1	272	156	176	11.3304
UGUGCCUUCUAUUAGGCCAU	chr7:98479360-98479572(+)$1	212	100	120	10.9794
CUAUGCUGGGGAGAGCGUAG	chr19:3361222-3361443(+)$1	221	136	156	9.8883
GCAGCUUAUAAUGAGGGAGC	chr9:136131998-136132231(-)$1	233	124	144	12.6032
GGGGCUGAGUGUACAGGCCC	chr19:1415883-1416151(+)$1	268	181	201	11.7272
UGGAUUCUGUCUUGAGCUGC	chr16:89370571-89370819(-)$1	248	215	235	11.9477
UGUGCCUUCUAUUAGGCCAU	chr7:98479338-98479545(+)$1	207	122	142	10.9794
UUUGAUCUUAUUUGAUCGGA	chr1:109642923-109643137(+)$1	214	66	86	12.4240
UGUGCUGUGUGAGUAGCACU	chr16:89023746-89024028(-)$1	282	193	213	10.6153
AGUAGGAAGGAUGUCCUCGU	chr9:136132879-136133108(-)$1	229	177	197	11.2370
AGGUCCUGGGCAAAGGAUCA	chr17:7480116-7480344(+)$1	228	115	135	10.0414
UUUCUGAGAGUGAUCGGCUC	chr2:234184373-234184584(+)$1	211	156	176	11.0717
GAGUGCUUGUGAUGGUCUGU	chr19:47732219-47732436(-)$1	217	129	149	12.3417
UGUGCCUUCUAUUAGGCCAU	chr7:98479351-98479560(+)$1	209	109	129	10.9794
UUUGAUCUUAUUUGAUCGGA	chr1:109642853-109643060(+)$1	207	136	156	12.4240
GUUGGGAAAGUUGUCCCCAC	chr19:47731959-47732248(-)$1	289	163	183	10.4495
GGGGGUUUCUCUUAACCCUU	chrX:39953167-39953437(-)$1	270	25	45	12.4240
UUUUUUUGUCUUGAAGAGAA	chr15:66795118-66795350(-)$1	232	52	72	12.2752
UUUUAGUUCCUUCACUCCCU	chr22:35738112-35738400(+)$1	288	137	157	11.9359
GAGGGAGUUUCACCAUCCUC	chr19:16188125-16188376(+)$1	251	174	194	11.3997
GGAGCCCUCCUUUGCCUGCU	chr22:19710374-19710612(+)$1	238	19	39	12.3949
GCCUCAGUUUUCUCUGGGCG	chr4:1238687-1238948(-)$1	261	199	219	11.1183
UGGGUAUGUUUGGGUACCCC	chr2:97559836-97560087(-)$1	251	66	86	11.0336
CUUUGGGUACAACAGCGUGG	chr20:1165406-1165674(-)$1	268	158	178	8.8807
UCUUUGCAGAAAAGGGAGGG	chr16:85627601-85627866(+)$1	265	82	102	12.5447
UAUACUUAAAAGGGGGAAAU	chr2:203155957-203156197(+)$1	240	194	214	11.8585
AGUUAAGAAUUUCCAUGACC	chr12:98993341-98993554(+)$1	213	49	69	10.2144
UUUGAUCUUAUUUGAUCGGA	chr1:109642906-109643108(+)$1	202	83	103	12.4240
CAGACAGAUGAGCCUGUGCU	chr22:50036172-50036399(-)$1	227	63	83	11.2467
UAAAGGCAGGCAGGCCCAAG	chr11:122929983-122930200(-)$1	217	45	65	12.1401
AUGGUCCAAGGUGGGGCUCU	chr22:50040916-50041186(-)$1	270	105	125	11.1353
GGCAGUGCCCCUACCUGCCC	chr1:32827795-32828062(-)$1	267	1	21	11.2912
UCCUGUGACUCCCCACAUAU	chr8:1788936-1789186(+)$1	250	201	221	11.4045
UUGAGAAAUGUGAUUCUUGA	chr15:66795058-66795303(-)$1	245	183	203	12.4240
gcugggcgugauggcucaca	chr2:203141053-203141335(+)$1	282	228	248	10.6890
CGACCCGUCAAUCUGAGGUU	chr19:1411641-1411894(+)$1	253	209	229	11.4124
GCGGAGGUGAGUUcccccgc	chrX:152954103-152954376(+)$1	273	182	202	10.4358
GACUGGCGGCUCAGCUUCCC	chr19:2199152-2199391(+)$1	239	154	174	12.1925
UCCUCUGGGAUGGCAGAGGG	chr22:50010521-50010804(-)$1	283	196	216	10.9676
ACUAGCACCUGUUUGUAUUC	chr3:186502553-186502782(+)$1	229	7	27	12.6662
UCGCUGCAGGGUCGAUGGCG	chr19:1416701-1416939(+)$1	238	20	40	11.3043
CGUGGCUGUGAGGAGGCUGG	chr19:1409165-1409386(+)$1	221	184	204	10.8429
UUUGUGGCUUUGGCACUGAC	chr12:123997699-123998012(-)$1	313	184	204	8.3111
UAUAUCCGAAAAUGGGUAUC	chr5:40832662-40832931(-)$1	269	52	72	10.9344

#DB
((((((((((...)))))))	chr7:5569897-5570152(-)$1	1	216	236	8.0663
)((((((......)))))).	chr16:88580965-88581214(+)$1	1	198	218	10.0143
(((((((......)))))))	chr1:109642821-109643028(+)$1	1	168	188	12.4240
((((((((.....)))))))	chr21:46576566-46576833(+)$1	1	244	264	7.8202
(((((((......)))))))	chr19:1421894-1422120(+)$1	1	74	94	9.8883
.(..(((......)))..).	chr11:65211942-65212201(+)$1	1	76	96	10.2779
.(.((((......))))).)	chr5:138614432-138614639(+)$1	1	184	204	11.4135
.((((((......))))))(	chr21:47612164-47612445(-)$1	1	105	125	10.0305
(((((((......)))))))	chr19:2425991-2426267(-)$1	1	225	245	12.4240
(((((.(......)))))))	chr1:16174697-16174964(+)$1	1	131	151	12.6039
(((.(((......))).)))	chr13:92000575-92000842(+)$1	1	207	227	12.0326
(((((.(......).)))))	chrX:152956442-152956714(+)$1	1	156	176	11.3304
((.((((......)))))))	chr7:98479360-98479572(+)$1	1	100	120	10.9794
(((((((......)))))))	chr19:3361222-3361443(+)$1	1	136	156	9.8883
((..(((......)))..))	chr9:136131998-136132231(-)$1	1	124	144	12.6032
(((.(((......))).)))	chr19:1415883-1416151(+)$1	1	181	201	11.7272
(((.(((......)))))))	chr16:89370571-89370819(-)$1	1	215	235	11.9477
((.((((......)))))))	chr7:98479338-98479545(+)$1	1	122	142	10.9794
(((((((......)))))))	chr1:109642923-109643137(+)$1	1	66	86	12.4240
))(((((......)))))((	chr16:89023746-89024028(-)$1	1	193	213	10.6153
(..((((......))))..)	chr9:136132879-136133108(-)$1	1	177	197	11.2370
.((((((......))))))(	chr17:7480116-7480344(+)$1	1	115	135	10.0414
...((((......))))..)	chr2:234184373-234184584(+)$1	1	156	176	11.0717
((..(((......)))...)	chr19:47732219-47732436(-)$1	1	129	149	12.3417
((.((((......)))))))	chr7:98479351-98479560(+)$1	1	109	129	10.9794
(((((((......)))))))	chr1:109642853-109643060(+)$1	1	136	156	12.4240
((.((((......)))).))	chr19:47731959-47732248(-)$1	1	163	183	10.4495
(((((((......)))))))	chrX:39953167-39953437(-)$1	1	25	45	12.4240
(((((((......)))))))	chr15:66795118-66795350(-)$1	1	52	72	12.2752
....(((......))).)))	chr22:35738112-35738400(+)$1	1	137	157	11.9359
(((((.(......).)))))	chr19:16188125-16188376(+)$1	1	174	194	11.3997
(((((.(......)...)))	chr22:19710374-19710612(+)$1	1	19	39	12.3949
(((.(((......)))))))	chr4:1238687-1238948(-)$1	1	199	219	11.1183
.((((((......)))))))	chr2:97559836-97560087(-)$1	1	66	86	11.0336
.((((.((......)).)))	chr20:1165406-1165674(-)$1	1	158	178	8.8807
(((((.(......).)))))	chr16:85627601-85627866(+)$1	1	82	102	12.5447
(((.(((......)))..))	chr2:203155957-203156197(+)$1	1	194	214	11.8585
)((((.(......).)))).	chr12:98993341-98993554(+)$1	1	49	69	10.2144
(((((((......)))))))	chr1:109642906-109643108(+)$1	1	83	103	12.4240
(((((((......)))).))	chr22:50036172-50036399(-)$1	1	63	83	11.2467
(...(((......)))..))	chr11:122929983-122930200(-)$1	1	45	65	12.1401
(.(((((......))))).)	chr22:50040916-50041186(-)$1	1	105	125	11.1353
(((((.(......)))))))	chr1:32827795-32828062(-)$1	1	1	21	11.2912
...((((......))))...	chr8:1788936-1789186(+)$1	1	201	221	11.4045
(((((((......)))))))	chr15:66795058-66795303(-)$1	1	183	203	12.4240
(.(((((......)))))..	chr2:203141053-203141335(+)$1	1	228	248	10.6890
(((((((......)).))))	chr19:1411641-1411894(+)$1	1	209	229	11.4124
((((.((......)).))))	chrX:152954103-152954376(+)$1	1	182	202	10.4358
((..(((......)))))))	chr19:2199152-2199391(+)$1	1	154	174	12.1925
)((((((......))))))(	chr22:50010521-50010804(-)$1	1	196	216	10.9676
(...(((......))).)))	chr3:186502553-186502782(+)$1	1	7	27	12.6662
(((((((......).)))).	chr19:1416701-1416939(+)$1	1	20	40	11.3043
((.(.((......)).))))	chr19:1409165-1409386(+)$1	1	184	204	10.8429
((.(((.(...).))).)))	chr12:123997699-123998012(-)$1	1	184	204	8.3111
.((((((......)))))).	chr5:40832662-40832931(-)$1	1	52	72	10.9344

#PSSM
g : 0.23	e : 0.12	d : 0.10	c : 0.10	= : 0.07	f : 0.07	: : 0.05	! : 0.05	h : 0.03	" : 0.03	[ : 0.01	a : 0.01	b : 0.01	i : 0.01	# : 0.01	
g : 0.21	f : 0.16	d : 0.12	e : 0.10	= : 0.07	" : 0.07	c : 0.05	h : 0.03	a : 0.03	[ : 0.03	! : 0.01	b : 0.01	i : 0.01	# : 0.01	
f : 0.16	g : 0.16	[ : 0.12	e : 0.12	! : 0.09	= : 0.07	d : 0.07	" : 0.07	h : 0.03	c : 0.03	i : 0.01	# : 0.01	
d : 0.21	g : 0.16	f : 0.14	[ : 0.09	e : 0.09	= : 0.07	! : 0.07	h : 0.03	" : 0.03	i : 0.01	# : 0.01	a : 0.01	c : 0.01	
c : 0.23	d : 0.21	g : 0.16	f : 0.14	= : 0.07	e : 0.07	h : 0.03	[ : 0.03	i : 0.01	
c : 0.23	d : 0.18	[ : 0.14	g : 0.12	f : 0.10	e : 0.05	b : 0.05	= : 0.03	h : 0.03	i : 0.01	
c : 0.21	d : 0.16	a : 0.14	g : 0.12	f : 0.10	b : 0.07	e : 0.05	= : 0.03	h : 0.03	i : 0.01	[ : 0.01	
o : 0.92	= : 0.03	b : 0.01	a : 0.01	
o : 0.94	= : 0.01	n : 0.01	l : 0.01	
o : 0.94	= : 0.01	n : 0.01	l : 0.01	
o : 0.94	l : 0.03	n : 0.01	
o : 0.94	l : 0.01	n : 0.01	a : 0.01	
o : 0.94	l : 0.01	n : 0.01	] : 0.01	
c : 0.23	d : 0.16	a : 0.14	g : 0.12	f : 0.10	e : 0.05	b : 0.05	= : 0.03	h : 0.03	i : 0.01	o : 0.01	
c : 0.23	d : 0.16	f : 0.12	g : 0.12	] : 0.09	b : 0.07	= : 0.05	e : 0.05	h : 0.03	i : 0.01	3 : 0.01	
c : 0.23	d : 0.20	f : 0.14	g : 0.14	e : 0.07	= : 0.05	] : 0.05	h : 0.03	i : 0.01	3 : 0.01	b : 0.01	
d : 0.20	f : 0.14	g : 0.14	e : 0.12	] : 0.10	= : 0.07	2 : 0.07	h : 0.03	3 : 0.03	i : 0.01	c : 0.01	a : 0.01	
g : 0.20	f : 0.16	d : 0.14	e : 0.12	2 : 0.10	= : 0.07	h : 0.03	3 : 0.03	] : 0.03	c : 0.03	a : 0.01	i : 0.01	
g : 0.21	f : 0.16	d : 0.14	e : 0.09	= : 0.07	c : 0.07	h : 0.05	2 : 0.05	] : 0.03	3 : 0.03	a : 0.01	b : 0.01	i : 0.01	
g : 0.21	d : 0.16	e : 0.10	c : 0.09	= : 0.07	f : 0.07	: : 0.05	h : 0.05	a : 0.03	2 : 0.03	b : 0.01	i : 0.01	D : 0.01	3 : 0.01	] : 0.01	

#score	615.9399146328457
#seq	55
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_CDS_m3_run2.txt

#BEAR
eeeeeqqqqqqqqeeeee	chr17:34161458-34161672(+)$1	214	103	121	15.1207
[ddddqqqqqqqqdddd]	chr9:134019844-134020072(+)$1	228	158	176	13.9001
cc[bbqqqqqqqqbb]cc	chr11:46822741-46822973(-)$1	232	65	83	12.9948
gggggqqqqqqqqggggg	chr16:56969204-56969428(+)$1	224	203	221	14.0441
=====qqqqqqqq=====	chr17:48817562-48817802(+)$1	240	23	41	14.1785
ccc[aqqqqqqqqa]ccc	chr5:40832546-40832791(-)$1	245	188	206	13.5137
eeeeeqqqqqqqqeeeee	chr3:194170897-194171112(-)$1	215	92	110	15.1207
!ddddqqqqqqqqdddd]	chr1:28595581-28595832(+)$1	251	46	64	13.9003
eeeeeqqqqqqqqeeeee	chr4:79754606-79754888(+)$1	282	125	143	15.1207
eeeeeqqqqqqqqeeeee	chr14:21462840-21463074(+)$1	234	119	137	15.1207
[ddddqqqqqqqqdddd]	chr6:90489854-90490130(-)$1	276	38	56	13.9001
eeeeeqqqqqqqqeeeee	chr20:47691753-47692006(+)$1	253	197	215	15.1207
gggggqqqqqqqqggggg	chr1:100174569-100174786(-)$1	217	152	170	14.0441
eeeeeqqqqqqqqeeeee	chr12:116418595-116418862(-)$1	267	61	79	15.1207
eeeeeqqqqqqqqeeeee	chr12:104714756-104715036(+)$1	280	25	43	15.1207
$$cccqqqqqqqqccc22	chr1:27099964-27100222(+)$1	258	54	72	13.1184
eeeeeqqqqqqqqeeeee	chr2:170413622-170413880(-)$1	258	79	97	15.1207
dddbbqqqqqqqqbb]dd	chr3:9475410-9475662(+)$1	252	117	135	13.0004
eeeeeqqqqqqqqeeeee	chr21:17242272-17242518(+)$1	246	35	53	15.1207
dd[bbqqqqqqqqbb]dd	chr1:19472441-19472715(-)$1	274	96	114	13.0501
eeeeeqqqqqqqqeeeee	chr4:123196988-123197268(+)$1	280	225	243	15.1207
gggggqqqqqqqqggggg	chr1:160281678-160281932(-)$1	254	164	182	14.0441
ccc[aqqqqqqqqaccc]	chr17:56083200-56083439(-)$1	239	211	229	13.7619
###bbqqqqqqqqbb444	chr10:98287118-98287377(-)$1	259	110	128	12.8756
[ddddqqqqqqqqdddd2	chr17:35486990-35487257(-)$1	267	241	259	13.7001
e[cccqqqqqqqqcccee	chr10:111881757-111882012(+)$1	255	89	107	14.4453
eeeeeqqqqqqqqeeeee	chr21:33738909-33739175(-)$1	266	187	205	15.1207
[ddddqqqqqqqqdddd]	chr22:20077078-20077340(+)$1	262	57	75	13.9001
###bbqqqqqqqqbb333	chr8:101724884-101725133(-)$1	249	50	68	13.0259
eeeeeqqqqqqqqeeeee	chr1:207930245-207930498(+)$1	253	203	221	15.1207
[ddddqqqqqqqqdddd]	chr6:76368863-76369134(+)$1	271	180	198	13.9001
!!cccqqqqqqqqccc22	chrX:131202327-131202573(+)$1	246	137	155	13.8127
dd[bbqqqqqqqqbb]dd	chr12:98941233-98941510(+)$1	277	130	148	13.0501
eeeeeqqqqqqqqeeeee	chr6:111213248-111213507(+)$1	259	62	80	15.1207
#ddddqqqqqqqqdddd3	chr21:40636755-40637069(-)$1	314	155	173	13.7522
eeebbqqqqqqqqbb22e	chr1:27105393-27105619(+)$1	226	21	39	13.3758
gggggqqqqqqqqggggg	chr1:100543887-100544166(+)$1	279	41	59	14.0441
d[cccqqqqqqqqccc]d	chr9:114182297-114182545(-)$1	248	71	89	13.8463
b[cccqqqqqqqqccc]b	chr17:61877716-61877930(+)$1	214	176	194	13.3246
eeeeeqqqqqqqqeeeee	chr1:39796768-39797049(+)$1	281	5	23	15.1207
=====qqqqqqqq=====	chr19:10270961-10271209(-)$1	248	171	189	14.1785
ee!!aqqqqqqqqa22ee	chr11:120298638-120298953(+)$1	315	82	100	13.9001
ffcccqqqqqqqqccc]f	chr9:95015572-95015807(-)$1	235	106	124	13.8020
fffffqqqqqqqqfffff	chr6:31728851-31729072(+)$1	221	123	141	13.3114
eeeeeqqqqqqqqeeeee	chr7:892188-892426(+)$1	238	74	92	15.1207
:ddddqqqqqqqqddddd	chr1:1500116-1500412(-)$1	296	222	240	12.5814
ee[bbqqqqqqqqbb]ee	chr1:224475540-224475824(-)$1	284	261	279	13.8596
!!cccqqqqqqqqccc22	chr18:10546213-10546465(+)$1	252	17	35	13.8127
eeeeeqqqqqqqqeeeee	chr7:152007006-152007277(-)$1	271	37	55	15.1207
eeeeeqqqqqqqqeeeee	chr10:89624100-89624352(+)$1	252	203	221	15.1207
fffffqqqqqqqqfffff	chr1:70742382-70742640(-)$1	258	39	57	13.3114
eeeeeqqqqqqqqeeeee	chr4:119736145-119736422(-)$1	277	185	203	15.1207
e!!bbqqqqqqqqbb444	chr1:207934489-207934743(+)$1	254	187	205	13.3705
eeeeeqqqqqqqqeeeee	chrX:135954343-135954616(-)$1	273	254	272	15.1207
fffffqqqqqqqqfffff	chr13:33095435-33095725(-)$1	290	79	97	13.3114
""cccqqqqqqqqcccdd	chr9:71849237-71849522(+)$1	285	212	230	13.7866
fffffqqqqqqqqfffff	chr3:25656940-25657185(-)$1	245	91	109	13.3114
gggggqqqqqqqqggggg	chr2:37111082-37111352(-)$1	270	16	34	14.0441
eee[aqqqqqqqqa]eee	chr11:68325918-68326172(+)$1	254	231	249	14.6199
#ddddqqqqqqqqdddd2	chr7:50663070-50663342(-)$1	272	180	198	13.5695
eeeeeqqqqqqqqeeeee	chr16:58589306-58589554(-)$1	248	166	184	15.1207
eeeeeqqqqqqqqeeeee	chr12:57909766-57909976(+)$1	210	144	162	15.1207
eeeeeqqqqqqqqeeeee	chrX:44941853-44942107(+)$1	254	226	244	15.1207
c[a[aqqqqqqqqa]a]c	chr1:29391367-29391656(+)$1	289	121	139	13.5779
gggggqqqqqqqqggggg	chr5:158596652-158596950(-)$1	298	12	30	14.0441
!!cccqqqqqqqqccc]f	chr11:95511954-95512234(-)$1	280	122	140	14.1085
iiiiiqqqqqqqqiiiii	chr2:232322959-232323211(-)$1	252	96	114	13.8802
cccccqqqqqqqqccc]c	chr2:32431842-32432100(+)$1	258	1	19	13.7858
eeeeeqqqqqqqqeeeee	chr1:35478016-35478279(-)$1	263	78	96	15.1207
eddddqqqqqqqqdddd:	chr6:33178822-33179074(+)$1	252	128	146	12.8550
gggggqqqqqqqqggggg	chr17:25631694-25631954(+)$1	260	234	252	14.0441
fffffqqqqqqqqfffff	chr1:201965155-201965431(+)$1	276	73	91	13.3114
eeeeeqqqqqqqqeeeee	chr6:33263068-33263314(-)$1	246	73	91	15.1207
fffffqqqqqqqqfffff	chr6:64289848-64290100(+)$1	252	19	37	13.3114

#otherMatches

#Seq PSSM
UCCCUUAGGUCACAGGGA	chr17:34161458-34161672(+)$1	214	103	121	15.1207
CUUCAUUCUCCUUUGGAU	chr9:134019844-134020072(+)$1	228	158	176	13.9001
UACCCUUCUACAUGGCUG	chr11:46822741-46822973(-)$1	232	65	83	12.9948
UGGUAACAAUUUGUAUCA	chr16:56969204-56969428(+)$1	224	203	221	14.0441
AGAAAAAUAACUCUUUUU	chr17:48817562-48817802(+)$1	240	23	41	14.1785
AUGUCAACGAUUAGUCAU	chr5:40832546-40832791(-)$1	245	188	206	13.5137
UUUCUUUAAUUUCAGAAA	chr3:194170897-194171112(-)$1	215	92	110	15.1207
UGGAUAGGUAAUAAUCCU	chr1:28595581-28595832(+)$1	251	46	64	13.9003
CCAGAAAGAGCUAUCUGG	chr4:79754606-79754888(+)$1	282	125	143	15.1207
UUGAUGUAGUAGUGUCAG	chr14:21462840-21463074(+)$1	234	119	137	15.1207
GGUCAAUAAAUUCUGAUG	chr6:90489854-90490130(-)$1	276	38	56	13.9001
AUUCCAUGCUGCAGGAAU	chr20:47691753-47692006(+)$1	253	197	215	15.1207
GGGAAUGUUACUUUUCUC	chr1:100174569-100174786(-)$1	217	152	170	14.0441
UUAGAUCUCAGUUUCUAG	chr12:116418595-116418862(-)$1	267	61	79	15.1207
AAGUAAAAAUGUGUACUU	chr12:104714756-104715036(+)$1	280	25	43	15.1207
CCAGCACCCUGAAGCUAU	chr1:27099964-27100222(+)$1	258	54	72	13.1184
AUCAACUAUGUUAUUGAU	chr2:170413622-170413880(-)$1	258	79	97	15.1207
GCCCUGAAUCUGUGGAGG	chr3:9475410-9475662(+)$1	252	117	135	13.0004
GUGCAUUACUUUUUGUAC	chr21:17242272-17242518(+)$1	246	35	53	15.1207
UGCGAUAUUCCUUUCCCA	chr1:19472441-19472715(-)$1	274	96	114	13.0501
ACUGUAGUAUUGAAUAGu	chr4:123196988-123197268(+)$1	280	225	243	15.1207
ACGGCCAGCCUAUGCUGU	chr1:160281678-160281932(-)$1	254	164	182	14.0441
UGUACGGAAAGAAGAUAU	chr17:56083200-56083439(-)$1	239	211	229	13.7619
CCUCCCCCCACCAGGCAA	chr10:98287118-98287377(-)$1	259	110	128	12.8756
GUCUUACAUGCCCAAGGU	chr17:35486990-35487257(-)$1	267	241	259	13.7001
AUAUUUUACCAUUGAUUA	chr10:111881757-111882012(+)$1	255	89	107	14.4453
UGGUGAUGGUGACCACCG	chr21:33738909-33739175(-)$1	266	187	205	15.1207
CAACAAUUCCAAGUGUUU	chr22:20077078-20077340(+)$1	262	57	75	13.9001
UUAAGGAAAUGAACUGUA	chr8:101724884-101725133(-)$1	249	50	68	13.0259
AGUGUAAAAAAGGAUACU	chr1:207930245-207930498(+)$1	253	203	221	15.1207
AACAGAAACGACACUGUA	chr6:76368863-76369134(+)$1	271	180	198	13.9001
AGGAGAUGUUAAACUUGC	chrX:131202327-131202573(+)$1	246	137	155	13.8127
AGACCAAUCAAAGGGGCU	chr12:98941233-98941510(+)$1	277	130	148	13.0501
CAUCCUAUUAAAUGGAUG	chr6:111213248-111213507(+)$1	259	62	80	15.1207
ACUGUAAGUUUUCACAGG	chr21:40636755-40637069(-)$1	314	155	173	13.7522
CAACUGAUACAGAAGACU	chr1:27105393-27105619(+)$1	226	21	39	13.3758
AUUACUUAAUUAUGUAGU	chr1:100543887-100544166(+)$1	279	41	59	14.0441
UGAAUGGCUGGUAAUUGA	chr9:114182297-114182545(-)$1	248	71	89	13.8463
CAAUCUAGAAUAUGAUAG	chr17:61877716-61877930(+)$1	214	176	194	13.3246
UUGAAUGACUCCUUUCAA	chr1:39796768-39797049(+)$1	281	5	23	15.1207
UAUCGAAAGCAGAUGGUA	chr19:10270961-10271209(-)$1	248	171	189	14.1785
GUUUCUUGACAAUGUUAU	chr11:120298638-120298953(+)$1	315	82	100	13.9001
CAAGUUUGUAGAUAUUCU	chr9:95015572-95015807(-)$1	235	106	124	13.8020
CAGUGAACAAUGCCACUG	chr6:31728851-31729072(+)$1	221	123	141	13.3114
GCAAGUUUUUAGUCUUGC	chr7:892188-892426(+)$1	238	74	92	15.1207
CAGAUGUACAAUGAUCUU	chr1:1500116-1500412(-)$1	296	222	240	12.5814
GAAGGCUUUGUCACUGUC	chr1:224475540-224475824(-)$1	284	261	279	13.8596
CUACAAUCUAUGAUGUCA	chr18:10546213-10546465(+)$1	252	17	35	13.8127
UGAAGUUUUAUGUCUUUA	chr7:152007006-152007277(-)$1	271	37	55	15.1207
CUGUAUCCAUUUCUGCGG	chr10:89624100-89624352(+)$1	252	203	221	15.1207
UUUAAUCUUAUAUUUAAA	chr1:70742382-70742640(-)$1	258	39	57	13.3114
GGCUGGUCCGCCACAGCC	chr4:119736145-119736422(-)$1	277	185	203	15.1207
GUAACUUAUAGUUGUGAU	chr1:207934489-207934743(+)$1	254	187	205	13.3705
GUGACAUUGGCAAGUUAU	chrX:135954343-135954616(-)$1	273	254	272	15.1207
UUCUUUUUACUUUAAGAA	chr13:33095435-33095725(-)$1	290	79	97	13.3114
GAGCCGAGCCGAUGGUGA	chr9:71849237-71849522(+)$1	285	212	230	13.7866
UUUGUUAUUUUUUACAGG	chr3:25656940-25657185(-)$1	245	91	109	13.3114
UAUUUUUAAAGGUAAAUA	chr2:37111082-37111352(-)$1	270	16	34	14.0441
AAGCUUUUCUUAUAUCUU	chr11:68325918-68326172(+)$1	254	231	249	14.6199
AGAAAAUUAAAAAUUUCC	chr7:50663070-50663342(-)$1	272	180	198	13.5695
AGUAUUUAACUGUAUGCU	chr16:58589306-58589554(-)$1	248	166	184	15.1207
GUCUUAACUAGAAGAGAC	chr12:57909766-57909976(+)$1	210	144	162	15.1207
UCCUGUGCUAGAUUGGGA	chrX:44941853-44942107(+)$1	254	226	244	15.1207
UGUAGGAUUUAGACAAGA	chr1:29391367-29391656(+)$1	289	121	139	13.5779
UGUUUUAAUUAAUGAGUA	chr5:158596652-158596950(-)$1	298	12	30	14.0441
AAAUCAGUCAGCAGAUAG	chr11:95511954-95512234(-)$1	280	122	140	14.1085
GUUUUUUUAAUCUAGAGC	chr2:232322959-232323211(-)$1	252	96	114	13.8802
CUGUCAAAGCAAAGGCUG	chr2:32431842-32432100(+)$1	258	1	19	13.7858
UGUUAUUUUAUUUUAAUA	chr1:35478016-35478279(-)$1	263	78	96	15.1207
CGGCCGAUACCAGGGUCA	chr6:33178822-33179074(+)$1	252	128	146	12.8550
AAGAUGAUGGUAUGUCUU	chr17:25631694-25631954(+)$1	260	234	252	14.0441
AUGGUCUCUAAACACCAU	chr1:201965155-201965431(+)$1	276	73	91	13.3114
GAGGCCUCCCAUAGCCUU	chr6:33263068-33263314(-)$1	246	73	91	15.1207
UUGCCACAAGAGAGGUGA	chr6:64289848-64290100(+)$1	252	19	37	13.3114

#DB
(((((........)))))	chr17:34161458-34161672(+)$1	1	103	121	15.1207
.((((........)))).	chr9:134019844-134020072(+)$1	1	158	176	13.9001
((.((........)).))	chr11:46822741-46822973(-)$1	1	65	83	12.9948
(((((........)))))	chr16:56969204-56969428(+)$1	1	203	221	14.0441
(((((........)))))	chr17:48817562-48817802(+)$1	1	23	41	14.1785
(((.(........).)))	chr5:40832546-40832791(-)$1	1	188	206	13.5137
(((((........)))))	chr3:194170897-194171112(-)$1	1	92	110	15.1207
.((((........)))).	chr1:28595581-28595832(+)$1	1	46	64	13.9003
(((((........)))))	chr4:79754606-79754888(+)$1	1	125	143	15.1207
(((((........)))))	chr14:21462840-21463074(+)$1	1	119	137	15.1207
.((((........)))).	chr6:90489854-90490130(-)$1	1	38	56	13.9001
(((((........)))))	chr20:47691753-47692006(+)$1	1	197	215	15.1207
(((((........)))))	chr1:100174569-100174786(-)$1	1	152	170	14.0441
(((((........)))))	chr12:116418595-116418862(-)$1	1	61	79	15.1207
(((((........)))))	chr12:104714756-104715036(+)$1	1	25	43	15.1207
..(((........)))..	chr1:27099964-27100222(+)$1	1	54	72	13.1184
(((((........)))))	chr2:170413622-170413880(-)$1	1	79	97	15.1207
(((((........)).))	chr3:9475410-9475662(+)$1	1	117	135	13.0004
(((((........)))))	chr21:17242272-17242518(+)$1	1	35	53	15.1207
((.((........)).))	chr1:19472441-19472715(-)$1	1	96	114	13.0501
(((((........)))))	chr4:123196988-123197268(+)$1	1	225	243	15.1207
(((((........)))))	chr1:160281678-160281932(-)$1	1	164	182	14.0441
(((.(........)))).	chr17:56083200-56083439(-)$1	1	211	229	13.7619
...((........))...	chr10:98287118-98287377(-)$1	1	110	128	12.8756
.((((........)))).	chr17:35486990-35487257(-)$1	1	241	259	13.7001
(.(((........)))))	chr10:111881757-111882012(+)$1	1	89	107	14.4453
(((((........)))))	chr21:33738909-33739175(-)$1	1	187	205	15.1207
.((((........)))).	chr22:20077078-20077340(+)$1	1	57	75	13.9001
...((........))...	chr8:101724884-101725133(-)$1	1	50	68	13.0259
(((((........)))))	chr1:207930245-207930498(+)$1	1	203	221	15.1207
.((((........)))).	chr6:76368863-76369134(+)$1	1	180	198	13.9001
..(((........)))..	chrX:131202327-131202573(+)$1	1	137	155	13.8127
((.((........)).))	chr12:98941233-98941510(+)$1	1	130	148	13.0501
(((((........)))))	chr6:111213248-111213507(+)$1	1	62	80	15.1207
.((((........)))).	chr21:40636755-40637069(-)$1	1	155	173	13.7522
(((((........))..)	chr1:27105393-27105619(+)$1	1	21	39	13.3758
(((((........)))))	chr1:100543887-100544166(+)$1	1	41	59	14.0441
(.(((........))).)	chr9:114182297-114182545(-)$1	1	71	89	13.8463
(.(((........))).)	chr17:61877716-61877930(+)$1	1	176	194	13.3246
(((((........)))))	chr1:39796768-39797049(+)$1	1	5	23	15.1207
(((((........)))))	chr19:10270961-10271209(-)$1	1	171	189	14.1785
((..(........)..))	chr11:120298638-120298953(+)$1	1	82	100	13.9001
(((((........))).)	chr9:95015572-95015807(-)$1	1	106	124	13.8020
(((((........)))))	chr6:31728851-31729072(+)$1	1	123	141	13.3114
(((((........)))))	chr7:892188-892426(+)$1	1	74	92	15.1207
.((((........))))(	chr1:1500116-1500412(-)$1	1	222	240	12.5814
((.((........)).))	chr1:224475540-224475824(-)$1	1	261	279	13.8596
..(((........)))..	chr18:10546213-10546465(+)$1	1	17	35	13.8127
(((((........)))))	chr7:152007006-152007277(-)$1	1	37	55	15.1207
(((((........)))))	chr10:89624100-89624352(+)$1	1	203	221	15.1207
(((((........)))))	chr1:70742382-70742640(-)$1	1	39	57	13.3114
(((((........)))))	chr4:119736145-119736422(-)$1	1	185	203	15.1207
(..((........))...	chr1:207934489-207934743(+)$1	1	187	205	13.3705
(((((........)))))	chrX:135954343-135954616(-)$1	1	254	272	15.1207
(((((........)))))	chr13:33095435-33095725(-)$1	1	79	97	13.3114
..(((........)))))	chr9:71849237-71849522(+)$1	1	212	230	13.7866
(((((........)))))	chr3:25656940-25657185(-)$1	1	91	109	13.3114
(((((........)))))	chr2:37111082-37111352(-)$1	1	16	34	14.0441
(((.(........).)))	chr11:68325918-68326172(+)$1	1	231	249	14.6199
.((((........)))).	chr7:50663070-50663342(-)$1	1	180	198	13.5695
(((((........)))))	chr16:58589306-58589554(-)$1	1	166	184	15.1207
(((((........)))))	chr12:57909766-57909976(+)$1	1	144	162	15.1207
(((((........)))))	chrX:44941853-44942107(+)$1	1	226	244	15.1207
(.(.(........).).)	chr1:29391367-29391656(+)$1	1	121	139	13.5779
(((((........)))))	chr5:158596652-158596950(-)$1	1	12	30	14.0441
..(((........))).)	chr11:95511954-95512234(-)$1	1	122	140	14.1085
(((((........)))))	chr2:232322959-232323211(-)$1	1	96	114	13.8802
(((((........))).)	chr2:32431842-32432100(+)$1	1	1	19	13.7858
(((((........)))))	chr1:35478016-35478279(-)$1	1	78	96	15.1207
)((((........)))).	chr6:33178822-33179074(+)$1	1	128	146	12.8550
(((((........)))))	chr17:25631694-25631954(+)$1	1	234	252	14.0441
(((((........)))))	chr1:201965155-201965431(+)$1	1	73	91	13.3114
(((((........)))))	chr6:33263068-33263314(-)$1	1	73	91	15.1207
(((((........)))))	chr6:64289848-64290100(+)$1	1	19	37	13.3114

#PSSM
e : 0.41	g : 0.09	f : 0.09	[ : 0.06	c : 0.06	! : 0.05	d : 0.05	# : 0.05	= : 0.02	$ : 0.01	b : 0.01	: : 0.01	" : 0.01	i : 0.01	
e : 0.37	d : 0.17	g : 0.09	f : 0.09	c : 0.05	[ : 0.05	! : 0.05	= : 0.02	# : 0.02	$ : 0.01	" : 0.01	i : 0.01	
e : 0.35	c : 0.16	d : 0.14	g : 0.09	f : 0.08	[ : 0.05	= : 0.02	# : 0.02	! : 0.02	a : 0.01	i : 0.01	
e : 0.32	d : 0.13	c : 0.13	b : 0.12	g : 0.09	f : 0.08	[ : 0.05	= : 0.02	! : 0.01	i : 0.01	
e : 0.32	d : 0.13	c : 0.13	b : 0.12	g : 0.09	f : 0.08	a : 0.06	= : 0.02	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.32	d : 0.13	c : 0.13	b : 0.12	g : 0.09	f : 0.08	a : 0.06	= : 0.02	i : 0.01	
e : 0.32	c : 0.14	d : 0.13	b : 0.12	g : 0.09	f : 0.08	] : 0.04	= : 0.02	2 : 0.01	i : 0.01	
e : 0.33	c : 0.16	d : 0.13	g : 0.09	f : 0.08	] : 0.06	= : 0.02	4 : 0.02	2 : 0.02	3 : 0.01	a : 0.01	i : 0.01	
e : 0.37	d : 0.18	g : 0.09	] : 0.08	f : 0.08	2 : 0.05	c : 0.04	= : 0.02	4 : 0.02	3 : 0.01	i : 0.01	
e : 0.39	f : 0.10	g : 0.09	] : 0.08	d : 0.08	2 : 0.06	c : 0.05	= : 0.02	4 : 0.02	3 : 0.02	b : 0.01	i : 0.01	: : 0.01	

#score	1045.0920966674444
#seq	74
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_CDS_m2_run2.txt

#BEAR
!gggggggccc[cccqqqqqqqqccc]ccc]ggggggg3	chr16:29821389-29821626(+)$1	237	113	152	16.7153
eee[dddd####cccrrrrrrrrrccc4444ddddeeee	chr6:27860786-27861032(-)$1	246	55	94	15.5311
[eeeee!!ccc!!cccpppppppccc]ccc22eeeeedd	chr22:20119314-20119581(+)$1	267	53	92	12.7999
d[ccc$$$$$eeeeeqqqqqqqqeeeee333ccc]dddd	chr3:180707287-180707604(-)$1	317	44	83	13.3873
mddddccc"""cccrrrrrrrrrccc]cccffffff###	chr21:35445942-35446226(+)$1	284	32	71	14.2794
c!!dddd[ccc[cccqqqqqqqqccc]ccc]dddd]ccc	chr7:766484-766769(+)$1	285	186	225	15.7911
fffff[a!!eeeeerrrrrrrrreeeee4444a]fffff	chr11:77340728-77340997(-)$1	269	166	205	14.3069
iiiiiii####cccrrrrrrrrrccc4444iiiiiiiii	chr12:110719446-110719699(+)$1	253	75	114	17.7461
gg!!==========oooooo==========22ggggggg	chr6:33168977-33169215(+)$1	238	26	65	11.4088
dd!!ccc[gggggggrrrrrrrrrggggggg333ccc22	chr19:50985397-50985679(+)$1	282	25	64	15.0653
!bb[eeeeeddddrrrrrrrrrdddd]eeeee]bb]ccc	chr22:21800192-21800432(+)$1	240	64	103	12.6941
##iiiiiiiii[bbvvvvvvvvvvvvvbbiiiiiiiii4	chr8:146017318-146017550(-)$1	232	182	221	13.8085
a!!dddd[bb!!cccqqqqqqqqccc22bbdddd22a22	chr1:193028235-193028592(-)$1	357	170	209	13.6517
eeeee[ccca[eeeeerrrrrrrrreeeee]a333ccc]	chr8:125551297-125551567(+)$1	270	211	250	14.5631
!!ccc!!bb!!cccrrrrrrrrrccc]bbccc22dddd]	chrX:119005750-119006059(+)$1	309	168	207	15.8824
[dddd[eeeee[cccwwwwwwwwwwwwwwccc22eeeee	chr1:26798967-26799217(+)$1	250	121	160	14.7279
==========!!bbrrrrrrrrrbb==========bb[e	chr19:41858765-41858997(-)$1	232	27	66	15.8024
c[ccc[dddd[ddddqqqqqqqqdddddddd]cccccc4	chr6:52149302-52149564(-)$1	262	176	215	13.6415
d[eeeee[eeeee[aqqqqqqqqa]eeeee]eeeee]dd	chr17:80416521-80416783(+)$1	262	181	220	13.3481
[bb[ffffff[ddddqqqqqqqqdddd333ffffffbb]	chr2:10952703-10952967(-)$1	264	142	181	12.5392
dd!!ggggggg[a[aqqqqqqqqa]a]gggggggdddd5	chrX:48814288-48814567(-)$1	279	199	238	14.1693
==========!!axxxxxxxxxxxxxxxa22========	chr10:70660988-70661268(+)$1	280	166	205	16.5194
!ggggggg"""eeeeesssssssssseeeeeggggggg2	chr15:69745949-69746160(+)$1	211	70	109	13.0778
####ccc[cccuuuuuuuuuuuucccccc22bb]dddd]	chr8:109260742-109261040(-)$1	298	128	167	13.2727
#a[bb[dddd"""cccpppppppccc4444dddd]bbaf	chr18:47015801-47016020(-)$1	219	126	165	12.0023
e[ccc[eeeeecccrrrrrrrrrccc]eeeee]ccc]ee	chr6:26021842-26022085(+)$1	243	153	192	15.4838
c[bbccc[eeeeerrrrrrrrreeeeeccc]bbccc]cc	chr16:74330667-74331003(+)$1	336	267	306	13.1547
cc[a[a!!bb!!ddddoooooodddd22bb22a]a]ccc	chr14:23057846-23058128(-)$1	282	95	134	10.9487
[ggggggg[a"""cccpppppppccc333a]ggggggg]	chr11:5291003-5291217(-)$1	214	133	172	14.8501
ddddggggggg[ccc[aqqqqqqqqa]ccc]ggggggg2	chr17:73178811-73179082(-)$1	271	142	181	13.3570
cc####dddd!!cccqqqqqqqqccc22dddd4444ccc	chr17:74449083-74449318(-)$1	235	173	212	14.3237
iiiiiiii[dddd[arrrrrrrrra]dddd]iiiiiiii	chr7:65447000-65447287(-)$1	287	119	158	15.4660
gg[eeeee[ccc[bbqqqqqqqqbb]ccc22eeeeeggg	chr2:96971030-96971310(-)$1	280	145	184	13.2312
!!a[ffffffcccssssssssssccc]ffffff]a]ccc	chr9:4740786-4741072(-)$1	286	226	265	13.0090
CCcccccc"""ccccccooooooccc]ccc22ccc]ccc	chr22:19929119-19929402(-)$1	283	54	93	11.0376
!ggggggg"""eeeeesssssssssseeeeeggggggg2	chr15:69745925-69746147(+)$1	222	94	133	13.0778
!hhhhhhhh[awwwwwwwwwwwwwwa]hhhhhhhhdddd	chr5:180670690-180671006(-)$1	316	134	173	14.0306
"cccbba[bbeeeeerrrrrrrrreeeee]bb]a]bb]c	chr19:41770220-41770570(+)$1	350	194	233	12.9016
bb[ccc[dddd[bbrrrrrrrrrbb]dddd]ccc]bb]c	chr21:44527469-44527739(-)$1	270	128	167	13.2896
::ccc[ccc!!ddddrrrrrrrrrdddd4444cccccc:	chr12:54069736-54069964(-)$1	228	55	94	13.4003
eeeee[ccc####ddddoooooodddd333ccceeeee:	chr12:50146193-50146434(+)$1	241	137	176	10.1801
hhhhccc!!eeeeebbqqqqqqqqbb]eeeee333ccc]	chr9:100818954-100819251(+)$1	297	88	127	12.9774
''a[ccc[ccc"""aqqqqqqqqa22ccc]ccc]accc]	chr1:213031653-213031961(+)$1	308	141	180	13.9998
[eeeee$$$$$cccrrrrrrrrrccc4444eeeee]ccc	chr19:39926221-39926449(-)$1	228	140	179	15.7058
!!eeeee####ddddrrrrrrrrrdddd666666eeeee	chr15:82335837-82336110(-)$1	273	61	100	12.7715
+===========wwwwwwwwwwwwww===========44	chr21:27101913-27102213(-)$1	300	35	74	17.1638
ggggggg####ddddqqqqqqqqdddd4444gggggggh	chr15:90645424-90645676(-)$1	252	68	107	15.3131
###dddd[ccc!!bbqqqqqqqqbb22cccdddd22ccc	chr16:30081224-30081450(+)$1	226	89	128	13.3338
!!eeeee[bb[bbrrrrrrrrrbbbb]eeeee22a22a]	chr16:18800280-18800541(-)$1	261	57	96	12.8152
fdddd"""gggggggqqqqqqqqggggggg22dddd22f	chr19:11094714-11094994(+)$1	280	195	234	11.9386
dd"""ccc[axxxxxxxxxxxxxxxa]ccc4444dddd:	chr15:45003626-45003915(+)$1	289	206	245	14.2373
[hhhhhhhhwwwwwwwwwwwwwwhhhhhhhh]ggggggg	chr16:88729068-88729339(-)$1	271	22	61	13.0546
dd[ccceeeee[cccqqqqqqqqccc]eeeee]ccc]dd	chr19:42365078-42365327(+)$1	249	180	219	14.5842
a[bb[dddd[a[ddddoooooodddd]a333ddddbb]a	chr20:5100307-5100596(-)$1	289	153	192	10.4443

#otherMatches

#Seq PSSM
CGGAGGGGGUGCCUGUGAGCUCUCAGCCACUUCCCUCCC	chr16:29821389-29821626(+)$1	237	113	152	16.7153
UGUAGGUUCCUUUCACUCACUUUCUGACUUAGGCCACAG	chr6:27860786-27861032(-)$1	246	55	94	15.5311
cGGGUCCUGCGCCGCguccagcccgcccgcccgaccccg	chr22:20119314-20119581(+)$1	267	53	92	12.7999
GACAGUUUUCCGGCCUAGUUUGCGGCUGCUCCUGCCGUG	chr3:180707287-180707604(-)$1	317	44	83	13.3873
GAGCCGCACUCGCCGAUCCUCCAGGCAUGCCCCGCUACG	chr21:35445942-35446226(+)$1	284	32	71	14.2794
gccgcgccgcgcggccccgcgaugcccugccgcgccugc	chr7:766484-766769(+)$1	285	186	225	15.7911
UUAUGGUGAAUGCCAAAUUUGAAGGUAUGUAUGGUGUAA	chr11:77340728-77340997(-)$1	269	166	205	14.3069
CGCGGCCGGAGUGCGAGGCGGAGGCGAGGAGGCCGCGGG	chr12:110719446-110719699(+)$1	253	75	114	17.7461
UGUCCCUCUGGUCAGCGUGAUGGCCAGAGGCCUGGGGGC	chr6:33168977-33169215(+)$1	238	26	65	11.4088
CGUCGUCCUGUUCCUCAUGAUGUCAGGAGCGCCAGACAC	chr19:50985397-50985679(+)$1	282	25	64	15.0653
AGGGUCCCUGCCCGGGAGAGGAGGGUGAGGGGGUCGGGG	chr22:21800192-21800432(+)$1	240	64	103	12.6941
CGCUGGCCGGGGCGGGAGGGGAAGGGACGCCCGGCCGGA	chr8:146017318-146017550(-)$1	232	182	221	13.8085
GAGGUGGAUCGGGGCGGUGUGUGGCCAGGGCCAUGACGG	chr1:193028235-193028592(-)$1	357	170	209	13.6517
GAGUCGUGGUGCGUCCAGAGGUAAGGGAUGGGGACCCAG	chr8:125551297-125551567(+)$1	270	211	250	14.5631
CUUGUUGAUUCCAGGACUGGCUACUGCGUACAUCCACAG	chrX:119005750-119006059(+)$1	309	168	207	15.8824
GUCGCCGCCGCCACCAUGCCCAAGAGAAAGGUACGUGGC	chr1:26798967-26799217(+)$1	250	121	160	14.7279
CCGGGGGGCGCCGCCUCCCCCAUGCCGCCCUCCGGgcug	chr19:41858765-41858997(-)$1	232	27	66	15.8024
GAGGCGCCGGCGCGCGGGCUCUAGCGCUCGGAGCCCCUG	chr6:52149302-52149564(-)$1	262	176	215	13.6415
CAAGGUGAGCGCCGCGGGCCGGGGAGGCGCGCGCCUGGU	chr17:80416521-80416783(+)$1	262	181	220	13.3481
GGCAUGGCUCUCCUGGUGCUCGGUAGGUGCGGGCCAGCG	chr2:10952703-10952967(-)$1	264	142	181	12.5392
UCCCGGGGUUGGCGCGGUUGGCGGGGGCAGUCCCGAGCG	chrX:48814288-48814567(-)$1	279	199	238	14.1693
CCUCUGGGGGGACAUUAUGGAGCUGGAAGCACCCUUGGA	chr10:70660988-70661268(+)$1	280	166	205	16.5194
GUGUAAAUGUUGAGCCUUUUUGGCCUGGCUUGUUUGCAA	chr15:69745949-69746160(+)$1	211	70	109	13.0778
CUACUCGCAUCGCGCACUUUUUGGAUCGGCAUCUAGUCU	chr8:109260742-109261040(-)$1	298	128	167	13.2727
UGAGCAUAUCCAAGUGAACAAAGCACCUAAGAUGCGCCG	chr18:47015801-47016020(-)$1	219	126	165	12.0023
CACCAAGCCGGCCAUCCGGCGUCUGGCCCGGCGUGGCGG	chr6:26021842-26022085(+)$1	243	153	192	15.4838
CACGGGCACGCUGGAGAUGGCGCGGCGGCCGCGGACGAG	chr16:74330667-74331003(+)$1	336	267	306	13.1547
CGGUUCUUAGAAGAGUACUUGAGCUCCACUCCGCAGCGU	chr14:23057846-23058128(-)$1	282	95	134	10.9487
ACUAGCCUGUGGAGCAAGAUGAAUGUGGAAGAGGCUGGA	chr11:5291003-5291217(-)$1	214	133	172	14.8501
CGGCGCUCGCCAUGGCCGACGAAAAGCCCAAGGUGAGCU	chr17:73178811-73179082(-)$1	271	142	181	13.3570
gccccagccgcagcccccgucccggcGCCGGCGCCCGCC	chr17:74449083-74449318(-)$1	235	173	212	14.3237
GGCCCGGGGGUCGGCGGUUGCCUGGGCGGCGCUCGGGCC	chr7:65447000-65447287(-)$1	287	119	158	15.4660
UAACCGCCCGUAGUCUGCAAUACGAGUACAAGGCGGUGC	chr2:96971030-96971310(-)$1	280	145	184	13.2312
GCUGCGGGCGCGGCAUUUCCCUCCCGCCGCCCGGGACAG	chr9:4740786-4741072(-)$1	286	226	265	13.0090
CUGCCCCAGAAGCCCCACGACGAUGGCGGCAAUGGCGGU	chr22:19929119-19929402(-)$1	283	54	93	11.0376
GUGUAAAUGUUGAGCCUUUUUGGCCUGGCUUGUUUGCAA	chr15:69745925-69746147(+)$1	222	94	133	13.0778
UGUGGUGCUAGUUUCUCUAAGCCAUCCAGUGCCAUCCUC	chr5:180670690-180671006(-)$1	316	134	173	14.0306
GUGCGCCGUCUGAAGGUGAACGAACUUCGCGAGGAGCUG	chr19:41770220-41770570(+)$1	350	194	233	12.9016
GUGGGAAAUGGCGGAGUAUCUGGCCUCCAUCUUCGGCAC	chr21:44527469-44527739(-)$1	270	128	167	13.2896
ACGCAUGCGCUGAGCCUUCCUUUCGCUCUUCCCGCUGCU	chr12:54069736-54069964(-)$1	228	55	94	13.4003
AUGUAAGUGUUUUGACCUUGACUGGUUUUGUACUGCAUU	chr12:50146193-50146434(+)$1	241	137	176	10.1801
cggccggACCCAGACUGGUAGUGAGGCUUUGGACCCCGA	chr9:100818954-100819251(+)$1	297	88	127	12.9774
AUGGCGCGGCCAGACGAUGAGGAGGGGGCGGCGGUGGCG	chr1:213031653-213031961(+)$1	308	141	180	13.9998
GGUCUCAUCAAGGUGAACGGGCGGCCCCUGGAGAUGAUU	chr19:39926221-39926449(-)$1	228	140	179	15.7058
CCUGCAGCUCCGGUAucuucuuccugcucuucuucugca	chr15:82335837-82336110(-)$1	273	61	100	12.7715
AUGAUAUAUUUAGAGGUGAUUUAUAAUAAGUAUAUUAAC	chr21:27101913-27102213(-)$1	300	35	74	17.1638
GCGGGUCGUGCGCUCGCUCUGCAGAGCCUCAGGCUCGCG	chr15:90645424-90645676(-)$1	252	68	107	15.3131
GAAGGCUGCGCAGGAGGAGUAUGUCAAGCGAGCCCUGGU	chr16:30081224-30081450(+)$1	226	89	128	13.3338
UUGGCAAUGCCAGUAAAACCUCCUGUUUUGUCUUCCUUG	chr16:18800280-18800541(-)$1	261	57	96	12.8152
UGGGCCCUAGCCCGGGUCCCUCGCCGGGCUCCGCCCACA	chr19:11094714-11094994(+)$1	280	195	234	11.9386
GCUCUGGUCCUUCCUCUCCCGCUCUGCACCCUCUGUGGC	chr15:45003626-45003915(+)$1	289	206	245	14.2373
agggccucgacagacggggaaacugaggcucagggaggG	chr16:88729068-88729339(-)$1	271	22	61	13.0546
GAACUGGUUCUACACGCGAGCUGGUGAGGAACUUAGGUC	chr19:42365078-42365327(+)$1	249	180	219	14.5842
UGUUCGAGGCGCGCCUGGUCCAGGGCUCCAUCCUCAAGA	chr20:5100307-5100596(-)$1	289	153	192	10.4443

#DB
.((((((((((.(((........))).))).))))))).	chr16:29821389-29821626(+)$1	1	113	152	16.7153
(((.((((....(((.........)))....))))))))	chr6:27860786-27861032(-)$1	1	55	94	15.5311
.(((((..(((..(((.......))).)))..)))))))	chr22:20119314-20119581(+)$1	1	53	92	12.7999
(.(((.....(((((........)))))...))).))))	chr3:180707287-180707604(-)$1	1	44	83	13.3873
.))))(((...(((.........))).)))((((((...	chr21:35445942-35446226(+)$1	1	32	71	14.2794
(..((((.(((.(((........))).))).)))).)))	chr7:766484-766769(+)$1	1	186	225	15.7911
(((((.(..(((((.........)))))....).)))))	chr11:77340728-77340997(-)$1	1	166	205	14.3069
(((((((....(((.........)))....)))))))))	chr12:110719446-110719699(+)$1	1	75	114	17.7461
((..((((((((((......))))))))))..)))))))	chr6:33168977-33169215(+)$1	1	26	65	11.4088
((..(((.(((((((.........)))))))...)))..	chr19:50985397-50985679(+)$1	1	25	64	15.0653
.((.(((((((((.........)))).))))).)).)))	chr22:21800192-21800432(+)$1	1	64	103	12.6941
..(((((((((.((.............))))))))))).	chr8:146017318-146017550(-)$1	1	182	221	13.8085
(..((((.((..(((........)))..))))))..)..	chr1:193028235-193028592(-)$1	1	170	209	13.6517
(((((.((((.(((((.........))))).)...))).	chr8:125551297-125551567(+)$1	1	211	250	14.5631
..(((..((..(((.........))).)))))..)))).	chrX:119005750-119006059(+)$1	1	168	207	15.8824
.((((.(((((.(((..............)))..)))))	chr1:26798967-26799217(+)$1	1	121	160	14.7279
((((((((((..((.........))))))))))))((.(	chr19:41858765-41858997(-)$1	1	27	66	15.8024
(.(((.((((.((((........)))))))).)))))).	chr6:52149302-52149564(-)$1	1	176	215	13.6415
(.(((((.(((((.(........).))))).))))).))	chr17:80416521-80416783(+)$1	1	181	220	13.3481
.((.((((((.((((........))))...)))))))).	chr2:10952703-10952967(-)$1	1	142	181	12.5392
((..(((((((.(.(........).).))))))))))).	chrX:48814288-48814567(-)$1	1	199	238	14.1693
((((((((((..(...............)..))))))))	chr10:70660988-70661268(+)$1	1	166	205	16.5194
.(((((((...(((((..........)))))))))))).	chr15:69745949-69746160(+)$1	1	70	109	13.0778
....(((.(((............))))))..)).)))).	chr8:109260742-109261040(-)$1	1	128	167	13.2727
.(.((.((((...(((.......)))....)))).))))	chr18:47015801-47016020(-)$1	1	126	165	12.0023
(.(((.((((((((.........))).))))).))).))	chr6:26021842-26022085(+)$1	1	153	192	15.4838
(.(((((.(((((.........)))))))).))))).))	chr16:74330667-74331003(+)$1	1	267	306	13.1547
((.(.(..((..((((......))))..))..).).)))	chr14:23057846-23058128(-)$1	1	95	134	10.9487
.(((((((.(...(((.......)))...).))))))).	chr11:5291003-5291217(-)$1	1	133	172	14.8501
(((((((((((.(((.(........).))).))))))).	chr17:73178811-73179082(-)$1	1	142	181	13.3570
((....((((..(((........)))..))))....)))	chr17:74449083-74449318(-)$1	1	173	212	14.3237
((((((((.((((.(.........).)))).))))))))	chr7:65447000-65447287(-)$1	1	119	158	15.4660
((.(((((.(((.((........)).)))..))))))))	chr2:96971030-96971310(-)$1	1	145	184	13.2312
..(.(((((((((..........))).)))))).).)))	chr9:4740786-4741072(-)$1	1	226	265	13.0090
((((((((...((((((......))).)))..))).)))	chr22:19929119-19929402(-)$1	1	54	93	11.0376
.(((((((...(((((..........)))))))))))).	chr15:69745925-69746147(+)$1	1	94	133	13.0778
.((((((((.(..............).))))))))))))	chr5:180670690-180671006(-)$1	1	134	173	14.0306
.((((((.(((((((.........))))).)).).)).)	chr19:41770220-41770570(+)$1	1	194	233	12.9016
((.(((.((((.((.........)).)))).))).)).)	chr21:44527469-44527739(-)$1	1	128	167	13.2896
..(((.(((..((((.........))))....)))))).	chr12:54069736-54069964(-)$1	1	55	94	13.4003
(((((.(((....((((......))))...)))))))).	chr12:50146193-50146434(+)$1	1	137	176	10.1801
(((((((..(((((((........)).)))))...))).	chr9:100818954-100819251(+)$1	1	88	127	12.9774
..(.(((.(((...(........)..))).))).)))).	chr1:213031653-213031961(+)$1	1	141	180	13.9998
.(((((.....(((.........)))....))))).)))	chr19:39926221-39926449(-)$1	1	140	179	15.7058
..(((((....((((.........))))......)))))	chr15:82335837-82336110(-)$1	1	61	100	12.7715
.(((((((((((..............)))))))))))..	chr21:27101913-27102213(-)$1	1	35	74	17.1638
(((((((....((((........))))....))))))))	chr15:90645424-90645676(-)$1	1	68	107	15.3131
...((((.(((..((........))..)))))))..)))	chr16:30081224-30081450(+)$1	1	89	128	13.3338
..(((((.((.((.........)))).)))))..)..).	chr16:18800280-18800541(-)$1	1	57	96	12.8152
(((((...(((((((........)))))))..))))..)	chr19:11094714-11094994(+)$1	1	195	234	11.9386
((...(((.(...............).)))....)))).	chr15:45003626-45003915(+)$1	1	206	245	14.2373
.((((((((..............)))))))).)))))))	chr16:88729068-88729339(-)$1	1	22	61	13.0546
((.((((((((.(((........))).))))).))).))	chr19:42365078-42365327(+)$1	1	180	219	14.5842
(.((.((((.(.((((......)))).)...)))))).)	chr20:5100307-5100596(-)$1	1	153	192	10.4443

#PSSM
! : 0.16	d : 0.12	[ : 0.11	c : 0.09	e : 0.07	# : 0.07	g : 0.05	f : 0.03	i : 0.03	a : 0.03	= : 0.03	m : 0.01	C : 0.01	" : 0.01	b : 0.01	: : 0.01	h : 0.01	' : 0.01	+ : 0.01	
d : 0.14	g : 0.12	[ : 0.11	! : 0.11	e : 0.09	b : 0.05	# : 0.05	= : 0.05	c : 0.05	h : 0.05	i : 0.03	f : 0.01	a : 0.01	C : 0.01	: : 0.01	' : 0.01	
e : 0.14	c : 0.12	g : 0.09	! : 0.09	[ : 0.09	d : 0.07	b : 0.07	i : 0.05	= : 0.05	# : 0.05	h : 0.05	a : 0.03	f : 0.01	" : 0.01	
c : 0.16	e : 0.14	d : 0.12	g : 0.09	[ : 0.09	i : 0.05	! : 0.05	= : 0.05	b : 0.05	h : 0.05	# : 0.03	f : 0.01	a : 0.01	" : 0.01	
c : 0.24	e : 0.16	g : 0.12	d : 0.12	= : 0.07	f : 0.05	i : 0.05	b : 0.03	[ : 0.03	h : 0.03	# : 0.01	" : 0.01	
c : 0.18	[ : 0.14	g : 0.12	e : 0.12	d : 0.09	= : 0.07	i : 0.05	f : 0.03	h : 0.03	$ : 0.01	! : 0.01	a : 0.01	# : 0.01	b : 0.01	" : 0.01	
c : 0.20	d : 0.14	e : 0.14	g : 0.12	= : 0.07	! : 0.05	i : 0.05	$ : 0.03	a : 0.03	f : 0.03	h : 0.03	[ : 0.01	" : 0.01	
[ : 0.18	g : 0.11	d : 0.11	c : 0.11	e : 0.09	! : 0.07	= : 0.07	# : 0.05	$ : 0.03	i : 0.03	f : 0.03	h : 0.03	b : 0.01	" : 0.01	
c : 0.16	e : 0.11	b : 0.09	d : 0.09	# : 0.07	" : 0.07	= : 0.07	g : 0.07	[ : 0.07	$ : 0.03	! : 0.03	f : 0.03	h : 0.03	i : 0.01	
c : 0.12	e : 0.12	d : 0.11	# : 0.09	" : 0.07	= : 0.07	g : 0.07	b : 0.07	a : 0.05	$ : 0.03	! : 0.03	f : 0.03	[ : 0.03	i : 0.01	w : 0.01	
e : 0.16	c : 0.14	! : 0.12	" : 0.11	# : 0.09	g : 0.07	[ : 0.07	d : 0.05	= : 0.03	a : 0.03	i : 0.01	$ : 0.01	x : 0.01	w : 0.01	
[ : 0.16	e : 0.16	c : 0.14	! : 0.12	d : 0.12	" : 0.05	# : 0.03	= : 0.03	g : 0.03	w : 0.03	u : 0.01	b : 0.01	x : 0.01	
c : 0.27	e : 0.16	d : 0.16	b : 0.07	" : 0.05	w : 0.05	! : 0.03	g : 0.03	a : 0.03	= : 0.01	u : 0.01	[ : 0.01	# : 0.01	x : 0.01	
c : 0.31	d : 0.14	e : 0.12	b : 0.09	r : 0.05	[ : 0.05	w : 0.05	g : 0.03	x : 0.03	= : 0.01	u : 0.01	s : 0.01	" : 0.01	
c : 0.22	r : 0.20	d : 0.14	e : 0.09	a : 0.07	b : 0.05	w : 0.05	g : 0.03	x : 0.03	o : 0.01	v : 0.01	u : 0.01	s : 0.01	
r : 0.31	q : 0.27	c : 0.07	w : 0.07	e : 0.05	d : 0.05	x : 0.03	o : 0.01	v : 0.01	u : 0.01	[ : 0.01	s : 0.01	b : 0.01	
r : 0.33	q : 0.29	w : 0.07	p : 0.05	o : 0.05	s : 0.05	x : 0.03	v : 0.01	u : 0.01	a : 0.01	c : 0.01	d : 0.01	
r : 0.33	q : 0.31	o : 0.09	w : 0.07	p : 0.05	s : 0.05	x : 0.03	v : 0.01	u : 0.01	
r : 0.33	q : 0.31	o : 0.09	w : 0.07	p : 0.05	s : 0.05	x : 0.03	v : 0.01	u : 0.01	
r : 0.33	q : 0.31	o : 0.09	w : 0.07	p : 0.05	s : 0.05	x : 0.03	v : 0.01	u : 0.01	
r : 0.33	q : 0.31	w : 0.07	o : 0.07	p : 0.05	s : 0.05	x : 0.03	= : 0.01	v : 0.01	u : 0.01	
r : 0.33	q : 0.31	w : 0.07	o : 0.07	p : 0.05	s : 0.05	x : 0.03	= : 0.01	v : 0.01	u : 0.01	
q : 0.31	r : 0.27	w : 0.07	p : 0.05	d : 0.05	s : 0.05	x : 0.03	o : 0.03	= : 0.01	v : 0.01	u : 0.01	e : 0.01	b : 0.01	
c : 0.29	r : 0.12	d : 0.12	b : 0.09	e : 0.05	w : 0.05	a : 0.05	x : 0.03	s : 0.03	q : 0.03	= : 0.01	v : 0.01	g : 0.01	h : 0.01	
c : 0.31	d : 0.16	b : 0.11	e : 0.07	w : 0.05	g : 0.03	] : 0.03	x : 0.03	s : 0.03	= : 0.01	v : 0.01	r : 0.01	q : 0.01	a : 0.01	2 : 0.01	h : 0.01	
c : 0.31	d : 0.16	e : 0.11	a : 0.07	] : 0.05	= : 0.03	g : 0.03	w : 0.03	s : 0.03	b : 0.03	2 : 0.03	v : 0.01	x : 0.01	h : 0.01	
] : 0.31	e : 0.14	d : 0.14	c : 0.07	2 : 0.07	4 : 0.05	= : 0.05	g : 0.03	v : 0.01	w : 0.01	x : 0.01	3 : 0.01	h : 0.01	
c : 0.22	e : 0.22	4 : 0.09	d : 0.09	= : 0.05	g : 0.05	2 : 0.05	3 : 0.05	b : 0.03	h : 0.03	w : 0.01	x : 0.01	f : 0.01	a : 0.01	
c : 0.22	e : 0.18	4 : 0.12	3 : 0.09	b : 0.07	d : 0.07	= : 0.05	g : 0.05	h : 0.03	w : 0.01	a : 0.01	f : 0.01	6 : 0.01	
c : 0.20	e : 0.16	4 : 0.12	3 : 0.07	d : 0.07	= : 0.05	g : 0.05	2 : 0.05	b : 0.03	h : 0.03	] : 0.03	i : 0.01	a : 0.01	f : 0.01	6 : 0.01	
] : 0.16	2 : 0.14	e : 0.14	4 : 0.09	d : 0.09	c : 0.07	f : 0.05	3 : 0.03	i : 0.03	g : 0.03	= : 0.03	h : 0.03	b : 0.01	6 : 0.01	
e : 0.14	g : 0.12	d : 0.12	c : 0.11	2 : 0.09	f : 0.05	4 : 0.05	i : 0.05	= : 0.05	b : 0.05	] : 0.03	3 : 0.01	a : 0.01	h : 0.01	6 : 0.01	
g : 0.16	d : 0.12	c : 0.12	e : 0.07	] : 0.07	f : 0.05	i : 0.05	3 : 0.05	2 : 0.05	= : 0.05	a : 0.03	b : 0.03	4 : 0.03	h : 0.01	6 : 0.01	
g : 0.16	c : 0.14	d : 0.12	e : 0.09	] : 0.09	i : 0.05	3 : 0.05	2 : 0.05	= : 0.05	f : 0.03	4 : 0.03	b : 0.01	h : 0.01	a : 0.01	6 : 0.01	
g : 0.14	d : 0.14	e : 0.12	c : 0.12	] : 0.07	a : 0.07	f : 0.05	i : 0.05	= : 0.05	2 : 0.03	3 : 0.03	b : 0.01	4 : 0.01	h : 0.01	
c : 0.16	g : 0.14	e : 0.12	d : 0.12	] : 0.11	b : 0.09	f : 0.05	i : 0.05	2 : 0.05	= : 0.03	4 : 0.01	
c : 0.25	g : 0.16	d : 0.11	b : 0.11	e : 0.09	] : 0.07	i : 0.05	= : 0.03	2 : 0.03	# : 0.01	f : 0.01	a : 0.01	
c : 0.25	g : 0.16	d : 0.16	e : 0.09	i : 0.05	2 : 0.05	] : 0.05	a : 0.03	# : 0.01	f : 0.01	[ : 0.01	b : 0.01	= : 0.01	4 : 0.01	
c : 0.20	] : 0.14	e : 0.09	d : 0.09	2 : 0.09	f : 0.05	g : 0.05	4 : 0.05	: : 0.05	i : 0.03	3 : 0.01	# : 0.01	5 : 0.01	= : 0.01	h : 0.01	a : 0.01	

#score	746.8155399009108
#seq	54
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_UTR_m1_run1.txt

#BEAR
iiiii####ccc[ccc[ddddmmmmdddd]cccccciiii	chr11:118970896-118971159(-)$1	263	109	149	14.4134
ee!!ccc[a[bb!!a!!ddddmmmmdddd22a22bba]cc	chr22:36661954-36662200(+)$1	246	102	142	13.6606
hhhhhhh[ccc!!a!!cccooooooccc22a22ccc333h	chr17:26890733-26891002(-)$1	269	173	213	16.2264
44ddddffffff####cccooooooccc333ffffff:::	chr15:44061722-44061944(+)$1	222	118	158	12.4605
==========ccc!!ddddnnnnndddd22ccc333====	chr15:58932875-58933140(-)$1	265	160	200	16.2154
b[ccc!!cccbb!!ccc[cccmmmmccc]cccbb]ccc33	chr11:6639997-6640223(-)$1	226	60	100	12.5772
#iiiiiiiii[bb"""cccooooooccc22bb]iiiiiii	chr1:156263219-156263460(-)$1	241	100	140	17.0992
c[cccbb[dddd"""eeeeeooooooeeeee]dddd]bb]	chr6:31915098-31915354(+)$1	256	19	59	13.7495
###ggggggg[bb####bboooooobbbb]gggggggddd	chr11:47266251-47266508(-)$1	257	166	206	13.7659
mmddddeeeee[bb[ddddoooooodddd22bbeeeeecc	chr17:26975947-26976254(-)$1	307	34	74	12.3155
b!!iiiiiiiii[cccrrrrrrrrrccc333iiiiiiiii	chr11:62396249-62396490(-)$1	241	10	50	13.5443
"""ggggggg[ccc[ddddooooooddddcccggggggg5	chr12:110780969-110781258(+)$1	289	130	170	14.8728
eeee:ggggggg####ddddoooooodddd4444gggggg	chr19:42460895-42461145(-)$1	250	62	102	15.7010
dd[ccc"""ccc[eeeeeooooooeeeee4444ccc4444	chr14:95081052-95081300(+)$1	248	120	160	15.0230
iiiiii####ccc!!bbbbnnnnnbb]bb22ccciiiiii	chr2:128877828-128878076(+)$1	248	95	135	13.4399
ee!!ccc[ccc[ccc[ccclllccccccccc]ccceeeee	chr17:40695547-40695773(+)$1	226	49	89	11.9236
d[ccc####dddd[cccddddmmmmdddd]ccc4444ddd	chr8:144102896-144103155(+)$1	259	176	216	13.4520
c[cccbb[dddd"""eeeeeooooooeeeee]dddd]bb]	chr6:31915043-31915255(+)$1	212	74	114	13.7495
edddd[ccc[bb"""bb[bboooooobb333bb333bbcc	chr6:31912510-31912730(+)$1	220	168	208	14.3023
d[ccc####dddd[cccddddmmmmdddd]ccc4444ddd	chr8:144102955-144103201(+)$1	246	117	157	13.4520
[eeeee"""dddd"""bbrrrrrrrrrbb333dddd22ee	chr8:11704460-11704670(-)$1	210	96	136	12.8561
[hhhhhhhh!!ccc!!cccooooooccc22ccc22hhhhh	chr21:15747916-15748235(-)$1	319	64	104	14.2006
[a[ccc"""ccc####ddddmmmmdddd22ccc4444ccc	chr6:31896457-31896692(+)$1	235	56	96	16.9605
=="""eeeeebb####ddddnnnnndddd22bb]eeeee2	chr15:72642756-72642985(-)$1	229	71	111	14.4605
!!eeeee!!ffffffddddoooooodddd22ffffff]ee	chr4:3514565-3514800(-)$1	235	169	209	14.3575
ffff$$$$$eeeee[ddddoooooodddd22eeeee22ff	chrX:119590501-119590724(-)$1	223	140	180	13.4112
hhhccc!!ccc!!cccccclllccc]ccc4444ccc22cc	chr16:74504976-74505198(-)$1	222	43	83	13.2026
[a[ccc"""ccc####ddddmmmmdddd22ccc4444ccc	chr6:31896494-31896710(+)$1	216	19	59	16.9605
f[gggggggbb"""eeeeeooooooeeeee]bb]gggggg	chr19:18286021-18286276(+)$1	255	49	89	14.6117
dddd[bb!!ccc"""eeeeemmmmeeeee333ccc22bb2	chr3:133494226-133494462(+)$1	236	161	201	14.1651
eeeeebb!!dddd####cccnnnnnccc333dddd22bb]	chr15:79221727-79221935(-)$1	208	33	73	14.1950
:ggggggg!!ccceeeeeooooooeeeee]ccc]gggggg	chr13:113803562-113803850(+)$1	288	138	178	12.8888
ddd!!a[cccccc"""ddddnnnnndddd666666ccc22	chr19:18288424-18288675(+)$1	251	130	170	12.6249
hhhh"""ccc[a[dddd[ddddllldddd22dddd333a]	chr19:45153009-45153346(+)$1	337	220	260	12.6858
eeeee####bbccc!!cccoooooocccccc]bb4444ee	chr7:75611488-75611715(+)$1	227	181	221	15.2747
!!adddd[ccc"""eeeeemmmmeeeee4444cccdddd]	chr2:128932245-128932497(+)$1	252	92	132	12.5659
=========="""bb[cccammmma]cccbb]========	chr20:33148562-33148862(-)$1	300	136	176	13.1301
ceeeee"""ccc####cccooooooccc333ccceeeee]	chr15:72637779-72637993(-)$1	214	145	185	19.0476
gggggg####ccc!!fffffflllffffffcccggggggg	chr15:44063204-44063409(+)$1	205	46	86	12.2876
ccc$$$$$dddd####a[cccmmmmccc]a22dddd22cc	chr17:79816997-79817228(-)$1	231	0	40	12.5641
:::eeeee[ccc"""ddddnnnnndddd333ccc]eeeee	chr4:74285253-74285456(+)$1	203	78	118	12.8323
d!!=========="""cccnnnnnccc22==========2	chr2:162862205-162862419(-)$1	214	41	81	15.4012
[eeeee!!eeeee!!bb[ccclllccc]bb4444eeeee4	chr6:31237981-31238232(-)$1	251	42	82	11.9081
ddeeeee[cccbb!!ddddmmmmdddd4444bb]ccc]ee	chr2:128459544-128459845(+)$1	301	33	73	12.5646
$$ffffff!!bb"""ddddoooooodddd]bb22ffffff	chr17:79817028-79817256(-)$1	228	154	194	14.6689
ffffff[a!!bb"""aooooooa4444bb22a]ffffff]	chr19:10943606-10943891(-)$1	285	220	260	12.7889
ee!!a[bb!!==========oooooo==========]bb]	chr16:5123053-5123281(+)$1	228	42	82	14.2756
"""ggggggg[a####ccccccnnnnnccc]ccc4444a]	chr14:94845772-94845999(-)$1	227	97	137	13.2109
!!dddd!!ccc"""bb[ddddmmmmdddd]bb22cccddd	chr3:33110311-33110548(-)$1	237	135	175	12.6815
[ccc####dddd####cccooooooccc333dddd333cc	chr12:53291105-53291371(-)$1	266	79	119	18.5289
ggggg!!cccdddd!!cccnnnnncccdddd]ccc22ggg	chr5:179147304-179147537(+)$1	233	14	54	13.0879
e]bb:eeeeeccc####cccooooooccc333ccc]eeee	chr2:216229546-216229759(-)$1	213	171	211	14.1650
''ggggggg[bb"""ddddnnnnndddd333bbggggggg	chr9:117093760-117094006(+)$1	246	175	215	14.8417
hhhhhhhhhhhh"""ddddoooooodddd333hhhhhhhh	chr17:79803646-79803856(-)$1	210	60	100	15.0673
eeee[ccc[ccc[ffffffooooooffffffccc]ccc]e	chr5:10390481-10390713(+)$1	232	14	54	12.6074
d===========!!ccceeeeellleeeee]ccc]=====	chr19:14675777-14675997(+)$1	220	52	92	13.3050
$$$$$ggggggg"""ddddoooooodddd4444ggggggg	chr12:9243922-9244125(-)$1	203	126	166	17.0667

#otherMatches

#Seq PSSM
GGAAUUAACGGCCUAGAGGCUGGCCAGUCACUAGUCAUUU	chr11:118970896-118971159(-)$1	263	109	149	14.4134
UGCAGGCGGACCAAGAACUGUGACCACAGGGCAGGGCAGC	chr22:36661954-36662200(+)$1	246	102	142	13.6606
GAAGGGAUGAGCACACCAUUUUAAUGUGAAGCCCUCUUUU	chr17:26890733-26891002(-)$1	269	173	213	16.2264
GAAGGUAAGUGUGAACCCUAUUCUGAGGAUAACAUUUGAG	chr15:44061722-44061944(+)$1	222	118	158	12.4605
UUCAGGUAGUUUAUCAUAUUAAAUAUGUCUUAACUUACUA	chr15:58932875-58933140(-)$1	265	160	200	16.2154
GACCCCUGACCCUACAGGCUGCCCCCAGGCUGGGUGUCCC	chr11:6639997-6640223(-)$1	226	60	100	12.5772
AGCUACUGUGGGGCUCCCUCCCAUCAGGCUUUGCACAGUG	chr1:156263219-156263460(-)$1	241	100	140	17.0992
UCUGCAGCGGGGUACUGCUCCAACCCGGGCAUCCCCAUUG	chr6:31915098-31915354(+)$1	256	19	59	13.7495
GCUUCCGCUUCCUCUUCGGAAUCUACCAGCAGGCGGAGAA	chr11:47266251-47266508(-)$1	257	166	206	13.7659
CUGGGUGAGAGAUGGUGAGGUGCGGUUCAAACACUCUUCC	chr17:26975947-26976254(-)$1	307	34	74	12.3155
UGUGGGUGGCUUCUUCAAAAACCCAGAGCCAGAGCUGCUU	chr11:62396249-62396490(-)$1	241	10	50	13.5443
CAAUCUGGUGACAGAUGGCCUGCCUGCCACUGCACUGGGG	chr12:110780969-110781258(+)$1	289	130	170	14.8728
CCACCCUGGUGGUCAUCGGCUCCCACGCUGCCUUCCACCA	chr19:42460895-42461145(-)$1	250	62	102	15.7010
AGCUGCAGCUGAGUAUGGGAAAUGCCAUGUUUGUCAAAGA	chr14:95081052-95081300(+)$1	248	120	160	15.0230
UUUUAGAGAUCUGCACCCCGACCUGGAGGGACAGUUGAAA	chr2:128877828-128878076(+)$1	248	95	135	13.4399
AUGAAUACCAGCAUCUGGUACAACCGAUCUGAUGUGUUUG	chr17:40695547-40695773(+)$1	226	49	89	11.9236
UGGGCAUCAGCUGCUGCCAGAGCUUUCUGUGCAAUUUCAG	chr8:144102896-144103155(+)$1	259	176	216	13.4520
UCUGCAGCGGGGUACUGCUCCAACCCGGGCAUCCCCAUUG	chr6:31915043-31915255(+)$1	212	74	114	13.7495
CUCUGUGGCCAGCAUGCAUGCCAGAACACCAGUCCACUGC	chr6:31912510-31912730(+)$1	220	168	208	14.3023
UGGGCAUCAGCUGCUGCCAGAGCUUUCUGUGCAAUUUCAG	chr8:144102955-144103201(+)$1	246	117	157	13.4520
GCUCUACAAGUCAGGUGCGUGCUGAUGGCUGAUGGCAAUA	chr8:11704460-11704670(-)$1	210	96	136	12.8561
UGAAUUUUUCUUCCCUUAACCAAUCUUACAGGACUGAAGA	chr21:15747916-15748235(-)$1	319	64	104	14.2006
CGCUGUCCAGCCCCUGUCUCCUUUGAGAAUGGCAUUUAUA	chr6:31896457-31896692(+)$1	235	56	96	16.9605
UAUCCGUGUGCUUGCAGAGUUUGACACUCCUGGCCACACU	chr15:72642756-72642985(-)$1	229	71	111	14.4605
UUCCGUGGACAGCCCGCCGUCAGGGUGGCUGGGGCUGGCA	chr4:3514565-3514800(-)$1	235	169	209	14.3575
UUCAGAAAAUGCCACUUGCCUUUAUGCAAAAUGGCAGAUG	chrX:119590501-119590724(-)$1	223	140	180	13.4112
GGACCUGAUGGAGUGUCUGAUACAGAACAAACACCAGAAG	chr16:74504976-74505198(-)$1	222	43	83	13.2026
CGCUGUCCAGCCCCUGUCUCCUUUGAGAAUGGCAUUUAUA	chr6:31896494-31896710(+)$1	216	19	59	16.9605
GGAGCAGGGGACCCAGCCUACCAGCAGGCUCUCACCCUGC	chr19:18286021-18286276(+)$1	255	49	89	14.6117
GAGCCCCGAAUCACGCUGUGGUCACACGGAAAGAUAAGGA	chr3:133494226-133494462(+)$1	236	161	201	14.1651
AGUCCCCGAGGGCCCCGCCUCUAUCAGGACAGCCCCAGGU	chr15:79221727-79221935(-)$1	208	33	73	14.1950
AGGGGAAGUACGGGAUCUACACCAAGGUCACCGCCUUCCU	chr13:113803562-113803850(+)$1	288	138	178	12.8888
UUGUCUGCCAGUUGUACCAGGUAAGCUGGGAGGGGAGCAG	chr19:18288424-18288675(+)$1	251	130	170	12.6249
CCAGGGUUCCUGUCUGGCACAGUCACUGUCACCAGCCUCU	chr19:45153009-45153346(+)$1	337	220	260	12.6858
ACGGCUCUAUGGCCACUGGUGCACCCCAGGCUCAGUCUGC	chr7:75611488-75611715(+)$1	227	181	221	15.2747
UUGUCCUAGGGCUACUUUCAGCUGAAAGCCAACCCAGGAG	chr2:128932245-128932497(+)$1	252	92	132	12.5659
CAUGGCCUCUACUUGACCGCCAAGGAUGGCACAGAGGCCA	chr20:33148562-33148862(-)$1	300	136	176	13.1301
UUGACAUCUGACCUGACAUUUGCCUAUGAACGUUUGUCAC	chr15:72637779-72637993(-)$1	214	145	185	19.0476
GAUCAGGGUUCUUUAAAAAGUUACACUUUUAAGCUGAUCU	chr15:44063204-44063409(+)$1	205	46	86	12.2876
CCUGAGUAUGCCAAAGCCGCUGGGAAGCUGAAGGCAGAAG	chr17:79816997-79817228(-)$1	231	0	40	12.5641
UAAGGAGACCUGCUUUGCCGAGGAGGUACUACAGUUCUCU	chr4:74285253-74285456(+)$1	203	78	118	12.8323
AGCAAGAAAAGUUGUUAUUGUAUGAAUUAAACUUUUUUUU	chr2:162862205-162862419(-)$1	214	41	81	15.4012
GCUUCUACCCUGCGGAGAUCACACUGACCUGGCAGCGGGA	chr6:31237981-31238232(-)$1	251	42	82	11.9081
CCGCGCUGGGCCUUCGCAGCACGCUGCUCACGGUGCUGGG	chr2:128459544-128459845(+)$1	301	33	73	12.5646
AAGUUCUUCAGGAAUGGAGACACGGCUUCCCCCAAGGAAU	chr17:79817028-79817256(-)$1	228	154	194	14.6689
GCCCCUGCCAUGGAAGGAAGAACGGGACAAAGGAGGGGCA	chr19:10943606-10943891(-)$1	285	220	260	12.7889
AAGCCGUGCAGAUUGCCAGACGCUCCUUUGGUAGUCACAG	chr16:5123053-5123281(+)$1	228	42	82	14.2756
GAUCUGAAGAGCGUCCUGGGUCAACUGGGCAUCACUAAGG	chr14:94845772-94845999(-)$1	227	97	137	13.2109
UCUGAGGACCAUGAUGUGGAAUAUUUUCUUCGGCUGGCUC	chr3:33110311-33110548(-)$1	237	135	175	12.6815
UCCAGGGCCGUGGUUGUGAAGAAGAUCGAGACACGUGAUG	chr12:53291105-53291371(-)$1	266	79	119	18.5289
AGGAUCUUGGCAGCCCUGGGCCAGCCAGCUGUUCAUAGUC	chr5:179147304-179147537(+)$1	233	14	54	13.0879
UGCCAGGCUCCCUACAAGUUAGAUAAGAUAAAGGGUGGGC	chr2:216229546-216229759(-)$1	213	171	211	14.1650
UGGGGGCUGUCUUUCUAUGGUAGGCAUGCUUAGCAGCCCC	chr9:117093760-117094006(+)$1	246	175	215	14.8417
CUUUGAAGACGUGGCUUUUGAUGAGAAAAAAAACGUCUUU	chr17:79803646-79803856(-)$1	210	60	100	15.0673
CUGUGUGCAUUCAUCAGCCUGGUGUGGUUGAGAGAGCAGA	chr5:10390481-10390713(+)$1	232	14	54	12.6074
GGUCGGGGGAGUCUGGGCGGCCCUAGGCUGAUCCUGCUUC	chr19:14675777-14675997(+)$1	220	52	92	13.3050
UAACAGUCCCUGACACCAUCACCGAGUGGAAGGCAGGGGC	chr12:9243922-9244125(-)$1	203	126	166	17.0667

#DB
(((((....(((.(((.((((....)))).))))))))))	chr11:118970896-118971159(-)$1	1	109	149	14.4134
((..(((.(.((..(..((((....))))..)..))).))	chr22:36661954-36662200(+)$1	1	102	142	13.6606
(((((((.(((..(..(((......)))..)..)))...)	chr17:26890733-26891002(-)$1	1	173	213	16.2264
..))))((((((....(((......)))...))))))...	chr15:44061722-44061944(+)$1	1	118	158	12.4605
(((((((((((((..((((.....))))..)))...))))	chr15:58932875-58933140(-)$1	1	160	200	16.2154
(.(((..(((((..(((.(((....))).))))).)))..	chr11:6639997-6640223(-)$1	1	60	100	12.5772
.(((((((((.((...(((......)))..)).)))))))	chr1:156263219-156263460(-)$1	1	100	140	17.0992
(.(((((.((((...(((((......))))).)))).)).	chr6:31915098-31915354(+)$1	1	19	59	13.7495
...(((((((.((....((......)))).))))))))))	chr11:47266251-47266508(-)$1	1	166	206	13.7659
..))))(((((.((.((((......))))..)))))))((	chr17:26975947-26976254(-)$1	1	34	74	12.3155
(..(((((((((.(((.........)))...)))))))))	chr11:62396249-62396490(-)$1	1	10	50	13.5443
...(((((((.(((.((((......)))))))))))))).	chr12:110780969-110781258(+)$1	1	130	170	14.8728
)))).(((((((....((((......))))....))))))	chr19:42460895-42461145(-)$1	1	62	102	15.7010
((.(((...(((.(((((......)))))....)))....	chr14:95081052-95081300(+)$1	1	120	160	15.0230
((((((....(((..((((.....)).))..)))))))))	chr2:128877828-128878076(+)$1	1	95	135	13.4399
((..(((.(((.(((.(((...))))))))).))))))))	chr17:40695547-40695773(+)$1	1	49	89	11.9236
(.(((....((((.(((((((....)))).)))....)))	chr8:144102896-144103155(+)$1	1	176	216	13.4520
(.(((((.((((...(((((......))))).)))).)).	chr6:31915043-31915255(+)$1	1	74	114	13.7495
(((((.(((.((...((.((......))...))...))))	chr6:31912510-31912730(+)$1	1	168	208	14.3023
(.(((....((((.(((((((....)))).)))....)))	chr8:144102955-144103201(+)$1	1	117	157	13.4520
.(((((...((((...((.........))...))))..))	chr8:11704460-11704670(-)$1	1	96	136	12.8561
.((((((((..(((..(((......)))..)))..)))))	chr21:15747916-15748235(-)$1	1	64	104	14.2006
.(.(((...(((....((((....))))..)))....)))	chr6:31896457-31896692(+)$1	1	56	96	16.9605
((...(((((((....((((.....))))..)).))))).	chr15:72642756-72642985(-)$1	1	71	111	14.4605
..(((((..((((((((((......))))..)))))).))	chr4:3514565-3514800(-)$1	1	169	209	14.3575
((((.....(((((.((((......))))..)))))..))	chrX:119590501-119590724(-)$1	1	140	180	13.4112
)))(((..(((..((((((...))).)))....)))..))	chr16:74504976-74505198(-)$1	1	43	83	13.2026
.(.(((...(((....((((....))))..)))....)))	chr6:31896494-31896710(+)$1	1	19	59	16.9605
(.(((((((((...(((((......))))).)).))))))	chr19:18286021-18286276(+)$1	1	49	89	14.6117
((((.((..(((...(((((....)))))...)))..)).	chr3:133494226-133494462(+)$1	1	161	201	14.1651
(((((((..((((....(((.....)))...))))..)).	chr15:79221727-79221935(-)$1	1	33	73	14.1950
.(((((((..((((((((......))))).))).))))))	chr13:113803562-113803850(+)$1	1	138	178	12.8888
(((..(.((((((...((((.....))))......)))..	chr19:18288424-18288675(+)$1	1	130	170	12.6249
((((...(((.(.((((.((((...))))..))))...).	chr19:45153009-45153346(+)$1	1	220	260	12.6858
(((((....(((((..(((......)))))).))....))	chr7:75611488-75611715(+)$1	1	181	221	15.2747
..(((((.(((...(((((....)))))....))))))).	chr2:128932245-128932497(+)$1	1	92	132	12.5659
((((((((((...((.((((....).))))).))))))))	chr20:33148562-33148862(-)$1	1	136	176	13.1301
((((((...(((....(((......)))...)))))))).	chr15:72637779-72637993(-)$1	1	145	185	19.0476
((((((....(((..((((((...))))))))))))))))	chr15:44063204-44063409(+)$1	1	46	86	12.2876
(((.....((((....(.(((....))).)..))))..))	chr17:79816997-79817228(-)$1	1	0	40	12.5641
...(((((.(((...((((.....))))...))).)))))	chr4:74285253-74285456(+)$1	1	78	118	12.8323
(..((((((((((...(((.....)))..)))))))))).	chr2:162862205-162862419(-)$1	1	41	81	15.4012
.(((((..(((((..((.(((...))).))....))))).	chr6:31237981-31238232(-)$1	1	42	82	11.9081
(((((((.(((((..((((....))))....)).))).))	chr2:128459544-128459845(+)$1	1	33	73	12.5646
..((((((..((...((((......)))).))..))))))	chr17:79817028-79817256(-)$1	1	154	194	14.6689
((((((.(..((...(......)....))..).)))))).	chr19:10943606-10943891(-)$1	1	220	260	12.7889
((..(.((..((((((((((......)))))))))).)).	chr16:5123053-5123281(+)$1	1	42	82	14.2756
...(((((((.(....((((((.....))).)))....).	chr14:94845772-94845999(-)$1	1	97	137	13.2109
..((((..(((...((.((((....)))).))..))))))	chr3:33110311-33110548(-)$1	1	135	175	12.6815
.(((....((((....(((......)))...))))...))	chr12:53291105-53291371(-)$1	1	79	119	18.5289
(((((..(((((((..(((.....))))))).)))..)))	chr5:179147304-179147537(+)$1	1	14	54	13.0879
).)).((((((((....(((......)))...))).))))	chr2:216229546-216229759(-)$1	1	171	211	14.1650
..(((((((.((...((((.....))))...)))))))))	chr9:117093760-117094006(+)$1	1	175	215	14.8417
((((((((((((...((((......))))...))))))))	chr17:79803646-79803856(-)$1	1	60	100	15.0673
((((.(((.(((.((((((......))))))))).))).)	chr5:10390481-10390713(+)$1	1	14	54	12.6074
((((((((((((..((((((((...))))).))).)))))	chr19:14675777-14675997(+)$1	1	52	92	13.3050
.....(((((((...((((......))))....)))))))	chr12:9243922-9244125(-)$1	1	126	166	17.0667

#PSSM
e : 0.15	d : 0.14	[ : 0.10	h : 0.07	c : 0.07	= : 0.05	! : 0.05	f : 0.05	i : 0.03	b : 0.03	# : 0.03	" : 0.03	: : 0.03	g : 0.03	$ : 0.03	4 : 0.01	m : 0.01	' : 0.01	
e : 0.17	[ : 0.10	h : 0.08	! : 0.08	d : 0.08	= : 0.07	i : 0.05	g : 0.05	" : 0.03	a : 0.03	f : 0.03	c : 0.03	$ : 0.03	4 : 0.01	# : 0.01	m : 0.01	: : 0.01	] : 0.01	' : 0.01	
e : 0.15	c : 0.12	d : 0.10	! : 0.08	h : 0.08	g : 0.08	i : 0.05	= : 0.05	" : 0.05	[ : 0.05	f : 0.05	# : 0.01	a : 0.01	: : 0.01	b : 0.01	$ : 0.01	
c : 0.17	e : 0.17	g : 0.14	d : 0.10	i : 0.07	! : 0.07	h : 0.07	= : 0.07	f : 0.05	$ : 0.03	" : 0.01	b : 0.01	
c : 0.19	g : 0.14	e : 0.14	d : 0.08	i : 0.07	= : 0.07	h : 0.05	$ : 0.05	: : 0.03	" : 0.03	[ : 0.03	f : 0.03	! : 0.01	a : 0.01	# : 0.01	
g : 0.15	e : 0.14	c : 0.12	# : 0.08	d : 0.07	= : 0.07	b : 0.07	h : 0.05	i : 0.05	! : 0.03	[ : 0.03	$ : 0.03	f : 0.03	a : 0.01	" : 0.01	
g : 0.14	# : 0.12	e : 0.10	" : 0.10	! : 0.08	b : 0.08	c : 0.07	= : 0.07	h : 0.05	f : 0.03	i : 0.03	$ : 0.03	[ : 0.03	d : 0.01	
g : 0.14	# : 0.12	[ : 0.12	c : 0.10	! : 0.10	" : 0.08	= : 0.07	e : 0.07	f : 0.03	i : 0.03	h : 0.03	$ : 0.03	a : 0.01	b : 0.01	
c : 0.19	g : 0.12	! : 0.12	# : 0.10	" : 0.08	= : 0.07	d : 0.07	e : 0.07	i : 0.03	h : 0.03	[ : 0.03	a : 0.01	f : 0.01	$ : 0.01	
c : 0.31	d : 0.14	g : 0.08	e : 0.08	! : 0.08	= : 0.07	[ : 0.05	f : 0.03	i : 0.03	# : 0.03	b : 0.03	h : 0.01	
c : 0.35	b : 0.15	d : 0.15	[ : 0.08	e : 0.05	= : 0.05	f : 0.03	g : 0.03	i : 0.01	! : 0.01	" : 0.01	h : 0.01	
c : 0.29	b : 0.17	d : 0.15	" : 0.07	= : 0.05	! : 0.03	f : 0.03	[ : 0.03	g : 0.03	e : 0.03	a : 0.03	i : 0.01	h : 0.01	
" : 0.24	c : 0.17	# : 0.15	[ : 0.08	! : 0.08	d : 0.08	b : 0.07	e : 0.03	= : 0.03	f : 0.01	
" : 0.29	# : 0.21	! : 0.14	c : 0.12	e : 0.05	b : 0.03	[ : 0.03	f : 0.03	d : 0.03	a : 0.01	= : 0.01	
" : 0.24	# : 0.21	! : 0.15	c : 0.14	e : 0.07	[ : 0.05	f : 0.03	b : 0.03	a : 0.01	d : 0.01	= : 0.01	
# : 0.21	d : 0.21	c : 0.12	e : 0.12	! : 0.08	" : 0.07	b : 0.07	[ : 0.03	f : 0.03	a : 0.01	= : 0.01	
c : 0.29	d : 0.29	e : 0.12	b : 0.07	# : 0.05	[ : 0.03	f : 0.03	! : 0.01	r : 0.01	a : 0.01	o : 0.01	= : 0.01	
d : 0.36	c : 0.26	e : 0.14	[ : 0.08	b : 0.05	f : 0.03	r : 0.01	o : 0.01	= : 0.01	
d : 0.38	c : 0.31	e : 0.10	b : 0.05	o : 0.05	r : 0.03	f : 0.03	= : 0.01	
o : 0.35	d : 0.19	n : 0.10	c : 0.10	e : 0.07	r : 0.03	l : 0.03	m : 0.03	b : 0.01	a : 0.01	f : 0.01	= : 0.01	
o : 0.45	n : 0.15	d : 0.10	m : 0.10	c : 0.07	r : 0.03	l : 0.03	f : 0.01	e : 0.01	
o : 0.45	m : 0.22	n : 0.15	l : 0.07	r : 0.03	d : 0.01	c : 0.01	e : 0.01	
o : 0.43	m : 0.22	n : 0.17	l : 0.07	r : 0.03	c : 0.03	a : 0.01	
o : 0.43	m : 0.19	n : 0.17	l : 0.07	r : 0.03	c : 0.03	e : 0.01	d : 0.01	4 : 0.01	
o : 0.40	m : 0.12	d : 0.10	c : 0.08	e : 0.07	n : 0.07	r : 0.03	l : 0.03	b : 0.01	a : 0.01	f : 0.01	4 : 0.01	
d : 0.36	c : 0.26	o : 0.10	e : 0.10	b : 0.03	] : 0.03	f : 0.03	r : 0.01	4 : 0.01	n : 0.01	
d : 0.38	c : 0.31	e : 0.14	b : 0.03	f : 0.03	] : 0.01	r : 0.01	4 : 0.01	= : 0.01	n : 0.01	
d : 0.38	c : 0.28	e : 0.14	b : 0.08	f : 0.03	2 : 0.01	] : 0.01	4 : 0.01	= : 0.01	
d : 0.29	3 : 0.14	2 : 0.12	e : 0.12	c : 0.10	b : 0.08	] : 0.03	4 : 0.03	f : 0.03	= : 0.01	
2 : 0.24	3 : 0.21	] : 0.12	c : 0.08	4 : 0.08	e : 0.07	d : 0.03	b : 0.03	f : 0.03	= : 0.03	6 : 0.01	a : 0.01	
c : 0.22	3 : 0.21	2 : 0.15	4 : 0.12	b : 0.07	] : 0.05	e : 0.03	= : 0.03	a : 0.01	g : 0.01	6 : 0.01	d : 0.01	f : 0.01	
c : 0.29	b : 0.15	] : 0.10	4 : 0.10	3 : 0.07	d : 0.05	a : 0.03	2 : 0.03	f : 0.03	= : 0.03	g : 0.01	i : 0.01	e : 0.01	6 : 0.01	
c : 0.35	b : 0.14	d : 0.12	4 : 0.08	2 : 0.07	= : 0.05	f : 0.03	] : 0.03	g : 0.03	i : 0.01	e : 0.01	6 : 0.01	h : 0.01	
c : 0.26	d : 0.12	4 : 0.10	g : 0.08	2 : 0.07	] : 0.07	f : 0.05	= : 0.05	3 : 0.03	b : 0.03	i : 0.03	e : 0.03	6 : 0.01	h : 0.01	
c : 0.19	g : 0.14	d : 0.12	4 : 0.10	e : 0.08	f : 0.07	] : 0.07	i : 0.05	= : 0.05	3 : 0.03	b : 0.01	2 : 0.01	6 : 0.01	h : 0.01	
c : 0.15	g : 0.14	e : 0.12	4 : 0.10	d : 0.08	f : 0.07	3 : 0.07	= : 0.07	i : 0.05	2 : 0.05	h : 0.03	b : 0.01	] : 0.01	
g : 0.14	e : 0.12	4 : 0.12	2 : 0.12	c : 0.08	i : 0.07	f : 0.07	= : 0.07	3 : 0.05	] : 0.05	h : 0.03	a : 0.01	b : 0.01	d : 0.01	
g : 0.14	e : 0.12	b : 0.10	c : 0.08	d : 0.08	i : 0.07	= : 0.07	2 : 0.07	] : 0.05	3 : 0.05	4 : 0.05	h : 0.03	f : 0.03	: : 0.01	
e : 0.17	c : 0.14	g : 0.14	b : 0.08	d : 0.08	i : 0.07	= : 0.07	f : 0.05	3 : 0.03	h : 0.03	a : 0.03	: : 0.01	4 : 0.01	2 : 0.01	] : 0.01	
] : 0.15	c : 0.14	e : 0.14	g : 0.12	i : 0.07	d : 0.07	2 : 0.07	h : 0.05	= : 0.05	4 : 0.03	f : 0.03	: : 0.01	3 : 0.01	5 : 0.01	

#score	803.3996836211611
#seq	57
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_transcript_m1_run1.txt

#BEAR
cc[dddd!!dddd!!bboooooobb22dddd22ddddccc	chr16:75272992-75273257(-)$1	265	181	221	11.8761
ccc!!eeeee!!bb!!cccmmmmccc22bb22eeeee22c	chr16:87878021-87878282(-)$1	261	44	84	13.0882
dd===========ddddammmma]dddd]===========	chr16:88850479-88850742(-)$1	263	130	170	15.7525
!!iiiiiiiii####cccnnnnnccc333iiiiiiiii33	chr19:955599-955844(+)$1	245	24	64	18.7133
===========[bb!!bbnnnnnbb22bb]==========	chr5:34192098-34192336(-)$1	238	46	86	16.5680
e[============ddddmmmmdddd333===========	chr17:79963149-79963407(+)$1	258	42	82	16.7601
dddd[ccc####dddd[ccclllcccdddd22ccc]dddd	chr22:50908885-50909124(-)$1	239	5	45	12.5062
cc[ggggggg[a[bb[annnnna]bb]a]ggggggg]ccc	chr13:92000340-92000626(+)$1	286	237	277	14.6757
==========####ddddoooooodddd4444========	chr9:136666005-136666248(-)$1	243	98	138	18.1187
bb[a!!eeeee[ccc!!ccclllccc]ccceeeee]a]bb	chr11:66384518-66384810(+)$1	292	225	265	12.7181
ggggggg"""ccc[a[bbmmmmbb]a]ccc333ggggggg	chr20:62582582-62582825(-)$1	243	111	151	14.3125
=======[a[dddd[aaooooooa]a]dddd]a]======	chr21:45139924-45140163(+)$1	239	160	200	15.9993
dd[bb[ccc!!ccc[cccooooooccc]ccc22cccbbdd	chr9:139939054-139939306(-)$1	252	23	63	14.0108
hh[ccc!!ffffff[cccnnnnncccffffff22ccchhh	chr9:136855406-136855669(-)$1	263	23	63	12.7336
gggg####ccc"""ddddnnnnnddddccc22ggggggg]	chr12:133122181-133122436(+)$1	255	178	218	16.6753
cc[a[==========[aqqqqqqqqa]==========]a]	chr19:576962-577228(+)$1	266	189	229	13.3825
###ggggggg!!ccc[ccc"""ccc[cccccciiiiiiii	chr22:50742772-50743041(-)$1	269	77	117	13.0131
ggggggg"""ccc[ddddnnnnnddddccc22ggggggg:	chr17:75411822-75412082(+)$1	260	132	172	15.6806
==========ccceeeeellleeeee]ccc]=========	chr20:60934834-60935082(-)$1	248	43	83	15.1639
=====[dddd!!bb!!ccclllccc333bb4444dddd]=	chr11:850955-851220(+)$1	265	101	141	14.5834
2ffffffccc[bb!!cccnnnnnccc22bbcccccc[eee	chr21:46844134-46844373(+)$1	239	114	154	13.2536
ee[eeeee[iiiiiiiiillliiiiiiiii]eeeee]eee	chr11:860511-860741(+)$1	230	89	129	12.8051
[ggggggg[a####ddddllldddda]gggggggbb]a]f	chr20:62516351-62516649(+)$1	298	88	128	14.0742
ccc"""ccc[dddd[cccnnnnncccdddd]ccc4444cc	chr5:176873734-176873981(-)$1	247	141	181	14.4797
B===========bb[cccoooooocccbb4444=======	chr19:1433125-1433377(+)$1	252	181	221	16.2935
cccggggggg!!a[ddddnnnnndddd]a22ggggggg]c	chr16:85670860-85671112(+)$1	252	78	118	16.7798
i!!a!!ggggggg[cccooooooccc333ggggggg22a]	chr17:7211392-7211636(+)$1	244	138	178	16.4899
gg"""ccc[dddd[cccooooooccc333dddd]ccc]gg	chr12:133118026-133118307(+)$1	281	71	111	14.8042
[==========!!ccc[annnnna]ccc22==========	chr1:1155431-1155658(-)$1	227	57	97	18.3501
cdddddddd[bb"""cccnnnnnccc333bb]dddd]ddd	chr17:80189125-80189345(+)$1	220	71	111	13.5145
==============ddddnnnnndddd]============	chr19:4060024-4060309(-)$1	285	14	54	18.5530
dd:ggggggg[gggggggnnnnnggggggg]gggggggii	chr14:105922315-105922556(+)$1	241	49	89	14.4938
ccc:=========="""ccclllccc]==========eee	chr20:60933607-60933894(-)$1	287	126	166	15.2756
eeee[eeeee"""a[ddddllldddd]a333eeeee]eee	chr14:105339813-105340039(+)$1	226	103	143	13.8122
i!!bb!!dddd"""ddddllldddd]dddd333bb22iii	chr16:88572999-88573237(+)$1	238	125	165	12.9337
iiiiiiiiidddd[cccoooooocccdddd]iiiiiiiii	chr16:2029100-2029389(+)$1	289	25	65	16.1570
!=============ddddnnnnndddd666666=======	chr9:137220551-137220789(+)$1	238	150	190	15.5806
==========[ccc[a[annnnna]accc==========f	chr20:3897927-3898314(+)$1	387	232	272	18.3958
eeee[eeeee[adddd[annnnna]dddd]a]eeeeeeee	chr2:134877785-134878045(+)$1	260	184	224	13.7926
gg[a[eeeee[bbccc[annnnna]ccc]bb]eeeee]a]	chr1:1157700-1157958(-)$1	258	159	199	14.7691
ggggggg[iiiiiiiiiooooooiiiiiiiiigggggggf	chr17:79958882-79959172(+)$1	290	93	133	15.5660
ccc[a!!ccc!!a[cccmmmmccc]a22ccc22a]ccc44	chr19:659577-659842(-)$1	265	123	163	13.0274
cccccc[ddddcccddddmmmmdddd]ccc22dddd]ccc	chr20:61287185-61287428(+)$1	243	119	159	12.5012
ee"""eeeee!!ccc[cccmmmmccc]ccc22eeeee]ee	chr17:79972760-79972980(+)$1	220	6	46	14.0519
cc[dddd!!a[ccc[ddddmmmmddddccca22dddd]cc	chr9:138978575-138978836(-)$1	261	156	196	12.8091
cc[eeeee!!ccc"""cccmmmmccc333ccc]eeeeecc	chr2:241905530-241905790(-)$1	260	35	75	13.8574
Dcccbb[gggggggddddnnnnndddd22ggggggg]bb]	chr17:80187576-80187835(+)$1	259	206	246	13.3586
egggggggbb[gggggggooooooggggggg]bb]ggggg	chr4:2795007-2795260(+)$1	253	211	251	13.6108
cc[ggggggg!!ccccccnnnnnccc]ccc333ggggggg	chr5:1069896-1070165(-)$1	269	192	232	18.8222
eeeeggggggg!!bba[annnnna]a]bb22gggggggFF	chr13:92000886-92001121(+)$1	235	65	105	14.1015
c[hhhhhhhh!!a[ddddoooooodddd]a22hhhhhhhh	chr20:62670309-62670580(+)$1	271	221	261	13.3962
a[dddd[ccc!!ddddccclllccc22dddd333ccc]dd	chr19:539732-539990(+)$1	258	133	173	13.2505

#otherMatches

#Seq PSSM
AGUGGGGCUGAGUCAUUCCCCUAAAGAGCUUUUCCCCCUG	chr16:75272992-75273257(-)$1	265	181	221	11.8761
CUCCAGGGACACUGCGUUCAUGGGGAGACAUCGUCCUCUG	chr16:87878021-87878282(-)$1	261	44	84	13.0882
CUGGUGUCAGGGCGGGGCAGGGGUCCCCAGUCCUGGCAUC	chr16:88850479-88850742(-)$1	263	130	170	15.7525
GUGUUUucucacacacucuauuugagagauggggaaacug	chr19:955599-955844(+)$1	245	24	64	18.7133
UUUAGUUCCUGGAGGCCUUCCGUAGAGCUGUGGGAGCUGG	chr5:34192098-34192336(-)$1	238	46	86	16.5680
GCCUGCGGGGCAGUGGUCCCCCGGCUCUUGCUGCCCUGCG	chr17:79963149-79963407(+)$1	258	42	82	16.7601
GCCAAGCCAACAGGUGCACUAGCAGUCACUGGGGUGUGGU	chr22:50908885-50909124(-)$1	239	5	45	12.5062
UccggggcccggggcgcgcgcggggcgUGGGGUCUCUGGG	chr13:92000340-92000626(+)$1	286	237	277	14.6757
GGUGGGGGUCACCCGGGGCAGUCUCCUCUUUGGGCUCCCA	chr9:136666005-136666248(-)$1	243	98	138	18.1187
GUGCGGCGGCCACUGCGAGCCAAGCUACGGGGCCGGGGAC	chr11:66384518-66384810(+)$1	292	225	265	12.7181
UGCAGGCACACGGCGCACAGUGGUCCUCCGCAGGCCUGCG	chr20:62582582-62582825(-)$1	243	111	151	14.3125
CACUUCCUGGCCUUGUCGAGUCAGCAGGAGGGCUGGGGGU	chr21:45139924-45140163(+)$1	239	160	200	15.9993
AUCAGAGUGUGCUCAGCCAGGAAAGGCGGAGGCCACCUAU	chr9:139939054-139939306(-)$1	252	23	63	14.0108
GCACAGAGGAGGCUUGGGAGGAGCCCAGCCUUGCCUGGUG	chr9:136855406-136855669(-)$1	263	23	63	12.7336
CAGGCUGCUCUCGAGGCCUGAUUGGCCAGAACCCUGACAG	chr12:133122181-133122436(+)$1	255	178	218	16.6753
UGGGGGCCUUCCCUUGCAUUUCGAAGGAAGGGGAGGCGUG	chr19:576962-577228(+)$1	266	189	229	13.3825
UUCCCAUACCCCUGGAUUGUAAGGACCCCUGCCUUUCUCU	chr22:50742772-50743041(-)$1	269	77	117	13.0131
GCCCCAGGAGGGCACCUGGAGAGcagggccggcuggggca	chr17:75411822-75412082(+)$1	260	132	172	15.6806
CCUUUGUUCUGGGAUCUGGAGCGGAUGCCCUGGGACGGGG	chr20:60934834-60935082(-)$1	248	43	83	15.1639
CCUGUGUGCUGGAUGGAGCAGAGCUGAGGUAGAGGGCGGA	chr11:850955-851220(+)$1	265	101	141	14.5834
AGGCCCUCUCUGCAGGGCGGAGAGCCAGGUGAGGAGGUGU	chr21:46844134-46844373(+)$1	239	114	154	13.2536
GGGUGGGGCGGCUGCUGGUGGCCAGCAGCUAUCCCAGCCU	chr11:860511-860741(+)$1	230	89	129	12.8051
AGGUUUAUGUCAUGAGUUUAGGGCUGGAUGAACCCCGGCG	chr20:62516351-62516649(+)$1	298	88	128	14.0742
GCGAAAGCGGCUCCGAGCGCUGGGCUGGAGGCGCGGGGCG	chr5:176873734-176873981(-)$1	247	141	181	14.4797
CAGCCUUGCUCAGGACCAACGCGGUGGCCUCAGUGGGCAG	chr19:1433125-1433377(+)$1	252	181	221	16.2935
CCUGCUUCUCGUGGCUGGACGACCCGGGUCGGGGGAGCUG	chr16:85670860-85671112(+)$1	252	78	118	16.7798
UGAGGAGGGGGCGGCCGCGGCACCGGAAGUGCCCCCCACG	chr17:7211392-7211636(+)$1	244	138	178	16.4899
GCAGCCCAGUUCUGCCCAUGCAGGGGAAGGGAAGUGGAGC	chr12:133118026-133118307(+)$1	281	71	111	14.8042
AUCCUUCCCUAACAGCAGAGGCCCGGCUCGUGGGGAGGGA	chr1:1155431-1155658(-)$1	227	57	97	18.3501
CGAGGGUGGAGUUUUGGGUUCCCCCCUUCGCCCCGCACCU	chr17:80189125-80189345(+)$1	220	71	111	13.5145
GCUGGGUGGGCCGGGGCGUGGGCUGUCUCUGGUUUAUCCG	chr19:4060024-4060309(-)$1	285	14	54	18.5530
CCACUGUGCUGGGGCCCGGCCUGUGGGUCUGAGCAUGGGG	chr14:105922315-105922556(+)$1	241	49	89	14.4938
UGGAGGACUGUGGGGUUGGCCAUGCUGUCUGCAGUCUGGG	chr20:60933607-60933894(-)$1	287	126	166	15.2756
GGCAGGGCUCAGAGGACCUGGAAGGUGUGCAGAGUUGUGU	chr14:105339813-105340039(+)$1	226	103	143	13.8122
CCCAGACCCAGCCCUCCUGCAAGGACCUGGACCCUCUGAG	chr16:88572999-88573237(+)$1	238	125	165	12.9337
UCCAGGGCCCUGCGUGUGACGGUGCAGCAGCGGCUCUGGA	chr16:2029100-2029389(+)$1	289	25	65	16.1570
GGGCUUGGUGGGCAGGGAGAGGAUCCCAGUCGGUGUCCAC	chr9:137220551-137220789(+)$1	238	150	190	15.5806
ACAGUGCUGCCUUGUAGCAUUCAGGUCAAGCAGCAUUGUA	chr20:3897927-3898314(+)$1	387	232	272	18.3958
AGGAGAGCCCGCACCGGGGUCGGCGCGGUCGGGGGCUUCC	chr2:134877785-134878045(+)$1	260	184	224	13.7926
CCAAGCUGGUGCCUCUGCGUGAAGAGGGUGGGGCCGGGUG	chr1:1157700-1157958(-)$1	258	159	199	14.7691
GGGACUCGUGGGGCGGGGAGGAGCCUGUCCCAGGGUUUUG	chr17:79958882-79959172(+)$1	290	93	133	15.5660
GCCAGAGUGGGGCGUGUGGCGGCAGGAACCAGACAGGCCA	chr19:659577-659842(-)$1	265	123	163	13.0274
CAGGGCGGGGUGACCUGGGACCCCAGUGUCUGACUCGGCC	chr20:61287185-61287428(+)$1	243	119	159	12.5012
UGUGUCAGGGCAGGGCGGGCACCCCCACUUCUCCCUGUCA	chr17:79972760-79972980(+)$1	220	6	46	14.0519
GGAGCCAGGCACAGACAGCAGCCGCUGCUGGGAUGGCACC	chr9:138978575-138978836(-)$1	261	156	196	12.8091
UGAGCUCUGAGCUGCGGCCUCCGGGUGUGGGCGAGGGCCA	chr2:241905530-241905790(-)$1	260	35	75	13.8574
GGACGAUGGGGGGAGCCGAGGGGCGGCUGUCCUCCUCUCU	chr17:80187576-80187835(+)$1	259	206	246	13.3586
CCGAGGGAGCGCGGCUUCGGGGCGGGGGCCGGGUGUCCCU	chr4:2795007-2795260(+)$1	253	211	251	13.6108
GACAUCGGGGUCUGAGACUUUGUGUCUUCAUUUCUCUGAU	chr5:1069896-1070165(-)$1	269	192	232	18.8222
CCGCCUGCGCCCGGCCGCUUGCUGGGAGUGUGGCGCGGGA	chr13:92000886-92001121(+)$1	235	65	105	14.1015
CGGCUCUGUCAGCGGCUCCCGGCUGGGCGGAGGGCAGAGC	chr20:62670309-62670580(+)$1	271	221	261	13.3962
GUGCGCGGUGCAGCCCCUCAUAGGGCCGGGUGUACACGGU	chr19:539732-539990(+)$1	258	133	173	13.2505

#DB
((.((((..((((..((......))..))))..)))))))	chr16:75272992-75273257(-)$1	1	181	221	11.8761
(((..(((((..((..(((....)))..))..)))))..)	chr16:87878021-87878282(-)$1	1	44	84	13.0882
))((((((((((((((((....).)))).)))))))))))	chr16:88850479-88850742(-)$1	1	130	170	15.7525
..(((((((((....(((.....)))...)))))))))..	chr19:955599-955844(+)$1	1	24	64	18.7133
(((((((((((.((..((.....))..)).))))))))))	chr5:34192098-34192336(-)$1	1	46	86	16.5680
(.((((((((((((((((....))))...)))))))))))	chr17:79963149-79963407(+)$1	1	42	82	16.7601
((((.(((....((((.(((...)))))))..))).))))	chr22:50908885-50909124(-)$1	1	5	45	12.5062
((.(((((((.(.((.(.....).)).).))))))).)))	chr13:92000340-92000626(+)$1	1	237	277	14.6757
((((((((((....((((......))))....))))))))	chr9:136666005-136666248(-)$1	1	98	138	18.1187
((.(..(((((.(((..(((...))).)))))))).).))	chr11:66384518-66384810(+)$1	1	225	265	12.7181
(((((((...(((.(.((....)).).)))...)))))))	chr20:62582582-62582825(-)$1	1	111	151	14.3125
(((((((.(.((((.((......).).)))).).))))))	chr21:45139924-45140163(+)$1	1	160	200	15.9993
((.((.(((..(((.(((......))).)))..)))))))	chr9:139939054-139939306(-)$1	1	23	63	14.0108
((.(((..((((((.(((.....)))))))))..))))))	chr9:136855406-136855669(-)$1	1	23	63	12.7336
((((....(((...((((.....)))))))..))))))).	chr12:133122181-133122436(+)$1	1	178	218	16.6753
((.(.((((((((((.(........).)))))))))).).	chr19:576962-577228(+)$1	1	189	229	13.3825
...(((((((..(((.(((...(((.((((((((((((((	chr22:50742772-50743041(-)$1	1	77	117	13.0131
(((((((...(((.((((.....)))))))..))))))).	chr17:75411822-75412082(+)$1	1	132	172	15.6806
((((((((((((((((((...))))).))).)))))))))	chr20:60934834-60935082(-)$1	1	43	83	15.1639
(((((.((((..((..(((...)))...))....)))).)	chr11:850955-851220(+)$1	1	101	141	14.5834
.))))))(((.((..(((.....)))..)))))(((.(((	chr21:46844134-46844373(+)$1	1	114	154	13.2536
((.(((((.(((((((((...))))))))).))))).)))	chr11:860511-860741(+)$1	1	89	129	12.8051
.(((((((.(....((((...))))).))))))))).).)	chr20:62516351-62516649(+)$1	1	88	128	14.0742
(((...(((.((((.(((.....))))))).)))....))	chr5:176873734-176873981(-)$1	1	141	181	14.4797
)(((((((((((((.(((......)))))....)))))))	chr19:1433125-1433377(+)$1	1	181	221	16.2935
((((((((((..(.((((.....)))).)..))))))).)	chr16:85670860-85671112(+)$1	1	78	118	16.7798
(..(..(((((((.(((......)))...)))))))..).	chr17:7211392-7211636(+)$1	1	138	178	16.4899
((...(((.((((.(((......)))...)))).))).))	chr12:133118026-133118307(+)$1	1	71	111	14.8042
.((((((((((..(((.(.....).)))..))))))))))	chr1:1155431-1155658(-)$1	1	57	97	18.3501
(((((((((.((...(((.....)))...)).)))).)))	chr17:80189125-80189345(+)$1	1	71	111	13.5145
((((((((((((((((((.....)))).))))))))))))	chr19:4060024-4060309(-)$1	1	14	54	18.5530
)).(((((((.(((((((.....))))))).)))))))((	chr14:105922315-105922556(+)$1	1	49	89	14.4938
))).((((((((((...(((...))).))))))))))(((	chr20:60933607-60933894(-)$1	1	126	166	15.2756
((((.(((((...(.((((...)))).)...))))).)))	chr14:105339813-105340039(+)$1	1	103	143	13.8122
(..((..((((...((((...)))).))))...))..)))	chr16:88572999-88573237(+)$1	1	125	165	12.9337
(((((((((((((.(((......))))))).)))))))))	chr16:2029100-2029389(+)$1	1	25	65	16.1570
.(((((((((((((((((.....))))......)))))))	chr9:137220551-137220789(+)$1	1	150	190	15.5806
((((((((((.(((.(.(.....).))))))))))))))(	chr20:3897927-3898314(+)$1	1	232	272	18.3958
((((.(((((.(((((.(.....).)))).).))))))))	chr2:134877785-134878045(+)$1	1	184	224	13.7926
((.(.(((((.(((((.(.....).))).)).))))).).	chr1:1157700-1157958(-)$1	1	159	199	14.7691
(((((((.(((((((((......))))))))))))))))(	chr17:79958882-79959172(+)$1	1	93	133	15.5660
(((.(..(((..(.(((....))).)..)))..).)))..	chr19:659577-659842(-)$1	1	123	163	13.0274
((((((.(((((((((((....)))).)))..)))).)))	chr20:61287185-61287428(+)$1	1	119	159	12.5012
((...(((((..(((.(((....))).)))..))))).))	chr17:79972760-79972980(+)$1	1	6	46	14.0519
((.((((..(.(((.((((....))))))))..)))).))	chr9:138978575-138978836(-)$1	1	156	196	12.8091
((.(((((..(((...(((....)))...))).)))))))	chr2:241905530-241905790(-)$1	1	35	75	13.8574
)(((((.(((((((((((.....))))..))))))).)).	chr17:80187576-80187835(+)$1	1	206	246	13.3586
)(((((((((.(((((((......))))))).)).)))))	chr4:2795007-2795260(+)$1	1	211	251	13.6108
((.(((((((..((((((.....))).)))...)))))))	chr5:1069896-1070165(-)$1	1	192	232	18.8222
))))(((((((..(((.(.....).).))..)))))))))	chr13:92000886-92001121(+)$1	1	65	105	14.1015
(.((((((((..(.((((......)))).)..))))))))	chr20:62670309-62670580(+)$1	1	221	261	13.3962
(.((((.(((..(((((((...)))..))))...))).))	chr19:539732-539990(+)$1	1	133	173	13.2505

#PSSM
c : 0.26	= : 0.13	e : 0.13	g : 0.11	d : 0.07	i : 0.05	! : 0.03	[ : 0.03	b : 0.01	h : 0.01	# : 0.01	2 : 0.01	B : 0.01	D : 0.01	a : 0.01	
c : 0.24	= : 0.19	g : 0.15	d : 0.09	e : 0.09	! : 0.05	[ : 0.05	b : 0.01	h : 0.01	# : 0.01	f : 0.01	i : 0.01	
= : 0.23	[ : 0.21	c : 0.13	g : 0.11	d : 0.05	e : 0.05	i : 0.03	! : 0.03	" : 0.03	# : 0.01	f : 0.01	: : 0.01	h : 0.01	
= : 0.23	g : 0.21	d : 0.09	e : 0.09	a : 0.07	c : 0.05	" : 0.05	i : 0.03	b : 0.03	! : 0.01	f : 0.01	: : 0.01	[ : 0.01	h : 0.01	
= : 0.24	g : 0.21	[ : 0.09	d : 0.07	! : 0.05	b : 0.05	" : 0.05	i : 0.03	c : 0.03	e : 0.03	# : 0.01	f : 0.01	a : 0.01	h : 0.01	
= : 0.24	g : 0.21	e : 0.13	d : 0.07	c : 0.07	! : 0.07	i : 0.03	[ : 0.03	# : 0.01	f : 0.01	" : 0.01	b : 0.01	h : 0.01	
= : 0.24	g : 0.23	e : 0.15	d : 0.07	c : 0.07	! : 0.05	[ : 0.05	i : 0.03	# : 0.01	f : 0.01	h : 0.01	
= : 0.23	g : 0.19	e : 0.15	c : 0.13	d : 0.07	! : 0.05	i : 0.03	" : 0.03	[ : 0.03	# : 0.01	h : 0.01	
= : 0.23	g : 0.15	e : 0.11	c : 0.11	d : 0.07	! : 0.05	i : 0.05	[ : 0.05	" : 0.03	# : 0.01	a : 0.01	f : 0.01	b : 0.01	h : 0.01	
= : 0.23	g : 0.15	d : 0.11	e : 0.11	c : 0.07	i : 0.05	[ : 0.05	" : 0.03	! : 0.03	a : 0.03	# : 0.01	f : 0.01	b : 0.01	h : 0.01	
! : 0.19	= : 0.17	[ : 0.15	d : 0.13	c : 0.09	i : 0.05	# : 0.05	g : 0.05	e : 0.01	f : 0.01	b : 0.01	" : 0.01	
! : 0.21	c : 0.15	= : 0.13	d : 0.09	# : 0.07	g : 0.07	" : 0.05	b : 0.05	[ : 0.03	a : 0.03	i : 0.03	f : 0.01	
c : 0.23	d : 0.15	b : 0.11	= : 0.11	" : 0.07	g : 0.07	# : 0.05	a : 0.05	i : 0.03	! : 0.03	[ : 0.01	f : 0.01	
c : 0.19	[ : 0.15	b : 0.11	d : 0.11	= : 0.09	" : 0.07	# : 0.05	g : 0.05	! : 0.03	i : 0.03	f : 0.01	e : 0.01	a : 0.01	
d : 0.30	c : 0.19	[ : 0.15	! : 0.09	" : 0.05	b : 0.03	i : 0.03	g : 0.03	# : 0.01	a : 0.01	= : 0.01	e : 0.01	
d : 0.34	c : 0.26	[ : 0.09	! : 0.07	a : 0.05	i : 0.03	g : 0.03	" : 0.03	b : 0.01	e : 0.01	
c : 0.34	d : 0.28	[ : 0.11	b : 0.05	a : 0.05	i : 0.03	g : 0.03	! : 0.01	e : 0.01	" : 0.01	
c : 0.32	d : 0.26	o : 0.11	a : 0.11	b : 0.03	g : 0.03	n : 0.01	q : 0.01	e : 0.01	i : 0.01	m : 0.01	
n : 0.38	o : 0.21	c : 0.17	m : 0.09	l : 0.07	d : 0.03	q : 0.01	
n : 0.38	o : 0.21	m : 0.17	l : 0.13	c : 0.05	q : 0.01	" : 0.01	
n : 0.38	o : 0.21	l : 0.19	m : 0.17	q : 0.01	" : 0.01	
n : 0.38	o : 0.21	m : 0.15	l : 0.11	d : 0.03	q : 0.01	" : 0.01	e : 0.01	i : 0.01	c : 0.01	
n : 0.36	o : 0.21	d : 0.09	m : 0.07	c : 0.07	l : 0.05	a : 0.03	b : 0.01	q : 0.01	e : 0.01	i : 0.01	
c : 0.36	d : 0.23	a : 0.11	o : 0.09	b : 0.05	] : 0.03	i : 0.03	q : 0.01	e : 0.01	g : 0.01	
c : 0.38	d : 0.28	] : 0.15	b : 0.05	i : 0.03	g : 0.03	q : 0.01	e : 0.01	
c : 0.36	d : 0.26	a : 0.13	2 : 0.05	i : 0.03	g : 0.03	b : 0.01	[ : 0.01	e : 0.01	3 : 0.01	] : 0.01	
d : 0.28	] : 0.24	3 : 0.13	2 : 0.11	c : 0.11	i : 0.03	g : 0.03	f : 0.01	
c : 0.24	d : 0.21	3 : 0.13	2 : 0.07	b : 0.05	] : 0.05	g : 0.05	a : 0.03	= : 0.03	i : 0.03	f : 0.01	6 : 0.01	
c : 0.24	d : 0.15	3 : 0.13	b : 0.11	] : 0.07	= : 0.05	g : 0.05	i : 0.03	2 : 0.03	4 : 0.01	f : 0.01	a : 0.01	6 : 0.01	
c : 0.24	d : 0.15	= : 0.11	g : 0.11	b : 0.09	i : 0.05	2 : 0.05	] : 0.03	4 : 0.03	f : 0.01	3 : 0.01	6 : 0.01	a : 0.01	
2 : 0.17	= : 0.15	g : 0.09	c : 0.09	] : 0.09	d : 0.07	3 : 0.07	4 : 0.05	i : 0.03	b : 0.03	a : 0.03	e : 0.01	f : 0.01	6 : 0.01	
2 : 0.21	= : 0.17	g : 0.13	] : 0.09	3 : 0.07	c : 0.07	i : 0.05	4 : 0.05	e : 0.05	f : 0.01	d : 0.01	6 : 0.01	
= : 0.19	g : 0.19	e : 0.13	2 : 0.09	3 : 0.07	i : 0.05	c : 0.05	d : 0.05	4 : 0.03	a : 0.01	6 : 0.01	] : 0.01	b : 0.01	h : 0.01	
= : 0.23	g : 0.23	e : 0.15	d : 0.07	c : 0.07	i : 0.05	] : 0.03	b : 0.03	2 : 0.01	4 : 0.01	a : 0.01	h : 0.01	3 : 0.01	
= : 0.24	g : 0.21	e : 0.15	c : 0.11	d : 0.09	i : 0.05	b : 0.03	] : 0.03	4 : 0.01	h : 0.01	
= : 0.24	g : 0.23	e : 0.13	c : 0.11	d : 0.09	i : 0.05	] : 0.03	b : 0.01	4 : 0.01	2 : 0.01	h : 0.01	
= : 0.24	g : 0.17	] : 0.13	e : 0.09	d : 0.07	c : 0.07	i : 0.05	2 : 0.03	a : 0.01	b : 0.01	[ : 0.01	4 : 0.01	h : 0.01	
= : 0.21	g : 0.17	] : 0.13	e : 0.11	c : 0.07	i : 0.07	d : 0.05	2 : 0.03	b : 0.03	h : 0.03	a : 0.01	4 : 0.01	
= : 0.21	g : 0.13	c : 0.11	e : 0.11	d : 0.07	i : 0.07	a : 0.05	] : 0.05	b : 0.03	h : 0.03	2 : 0.01	3 : 0.01	4 : 0.01	F : 0.01	
= : 0.21	c : 0.15	e : 0.11	] : 0.09	d : 0.07	g : 0.07	i : 0.07	f : 0.05	h : 0.03	3 : 0.01	b : 0.01	: : 0.01	4 : 0.01	F : 0.01	

#score	769.295309392954
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_transcript_m2_run1.txt

#BEAR
fff[bbvvvvvvvvvvvvvbb2	chr8:144940520-144940795(-)$1	275	193	215	22.9770
[eeeeevvvvvvvvvvvvveee	chr11:62609020-62609227(-)$1	207	98	120	24.5858
fffffftttttttttttfffff	chr20:57466610-57466874(+)$1	264	179	201	22.0005
ccc[bbtttttttttttbb]cc	chr10:17271230-17271578(+)$1	348	171	193	22.6940
[eeeeewwwwwwwwwwwwwwee	chrX:152953588-152953898(+)$1	310	208	230	22.5144
======ttttttttttt=====	chr16:29818737-29818993(+)$1	256	38	60	22.9755
ieeeeeuuuuuuuuuuuueeee	chr11:122929526-122929781(-)$1	255	35	57	23.6935
##ddddtttttttttttdddd2	chr1:173833875-173834145(-)$1	270	236	258	21.8437
eeeeewwwwwwwwwwwwwweee	chr9:136216195-136216413(+)$1	218	92	114	22.5992
eeeeeuuuuuuuuuuuueeeee	chr16:30081050-30081284(+)$1	234	137	159	22.7470
dd[cccvvvvvvvvvvvvvccc	chr16:88870232-88870536(+)$1	304	17	39	23.1104
ddd[bbtttttttttttbb]dd	chrX:152953830-152954113(+)$1	283	137	159	22.6965

#otherMatches

#Seq PSSM
GACCCCGUGCGCAACCUGAGGC	chr8:144940520-144940795(-)$1	275	193	215	22.9770
accugguauugcaguacuucca	chr11:62609020-62609227(-)$1	207	98	120	24.5858
CCUCGGGAACAGUAAGACCGAG	chr20:57466610-57466874(+)$1	264	179	201	22.0005
CAUCGCCACCCUCCGCAGCCAU	chr10:17271230-17271578(+)$1	348	171	193	22.6940
AUGAGAUUCUUCAGGCUCACUU	chrX:152953588-152953898(+)$1	310	208	230	22.5144
GCUAUGAAGAUGCCGACCAUGG	chr16:29818737-29818993(+)$1	256	38	60	22.9755
UGUUUGGCUUACUGAUAACAGA	chr11:122929526-122929781(-)$1	255	35	57	23.6935
UUGGAGAUUUUGGAUUACUCCU	chr1:173833875-173834145(-)$1	270	236	258	21.8437
UGGUGAUGACAUUUUAAACCAC	chr9:136216195-136216413(+)$1	218	92	114	22.5992
GGCGUCCAUCAACCUCAAUGCC	chr16:30081050-30081284(+)$1	234	137	159	22.7470
GCCGCGUCACCGACUUCUUcgc	chr16:88870232-88870536(+)$1	304	17	39	23.1104
ccugaccgccgcccccCGUGAg	chrX:152953830-152954113(+)$1	283	137	159	22.6965

#DB
(((.((.............)).	chr8:144940520-144940795(-)$1	1	193	215	22.9770
.(((((.............)))	chr11:62609020-62609227(-)$1	1	98	120	24.5858
((((((...........)))))	chr20:57466610-57466874(+)$1	1	179	201	22.0005
(((.((...........)).))	chr10:17271230-17271578(+)$1	1	171	193	22.6940
.(((((..............))	chrX:152953588-152953898(+)$1	1	208	230	22.5144
((((((...........)))))	chr16:29818737-29818993(+)$1	1	38	60	22.9755
((((((............))))	chr11:122929526-122929781(-)$1	1	35	57	23.6935
..((((...........)))).	chr1:173833875-173834145(-)$1	1	236	258	21.8437
(((((..............)))	chr9:136216195-136216413(+)$1	1	92	114	22.5992
(((((............)))))	chr16:30081050-30081284(+)$1	1	137	159	22.7470
((.(((.............)))	chr16:88870232-88870536(+)$1	1	17	39	23.1104
(((.((...........)).))	chrX:152953830-152954113(+)$1	1	137	159	22.6965

#PSSM
f : 0.16	[ : 0.16	e : 0.16	d : 0.16	c : 0.08	= : 0.08	i : 0.08	# : 0.08	
e : 0.41	f : 0.16	d : 0.16	c : 0.08	= : 0.08	# : 0.08	
e : 0.41	f : 0.16	d : 0.16	c : 0.08	= : 0.08	[ : 0.08	
e : 0.41	[ : 0.25	f : 0.08	= : 0.08	d : 0.08	c : 0.08	
e : 0.41	b : 0.25	f : 0.08	= : 0.08	d : 0.08	c : 0.08	
b : 0.25	e : 0.25	f : 0.08	= : 0.08	d : 0.08	w : 0.08	u : 0.08	c : 0.08	
t : 0.41	v : 0.25	w : 0.16	u : 0.16	
t : 0.41	v : 0.25	w : 0.16	u : 0.16	
t : 0.41	v : 0.25	w : 0.16	u : 0.16	
t : 0.41	v : 0.25	w : 0.16	u : 0.16	
t : 0.41	v : 0.25	w : 0.16	u : 0.16	
t : 0.41	v : 0.25	w : 0.16	u : 0.16	
t : 0.41	v : 0.25	w : 0.16	u : 0.16	
t : 0.41	v : 0.25	w : 0.16	u : 0.16	
t : 0.41	v : 0.25	w : 0.16	u : 0.16	
t : 0.41	v : 0.25	w : 0.16	u : 0.16	
t : 0.41	v : 0.25	w : 0.16	u : 0.16	
v : 0.25	b : 0.16	w : 0.16	f : 0.08	= : 0.08	u : 0.08	d : 0.08	e : 0.08	
v : 0.25	b : 0.16	w : 0.16	e : 0.16	f : 0.08	= : 0.08	d : 0.08	
e : 0.33	] : 0.16	b : 0.08	f : 0.08	w : 0.08	= : 0.08	d : 0.08	c : 0.08	
e : 0.41	c : 0.16	d : 0.16	b : 0.08	f : 0.08	= : 0.08	
e : 0.41	2 : 0.16	c : 0.16	f : 0.08	= : 0.08	d : 0.08	

#score	274.4380871858584
#seq	12
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_CDS_m2_run1.txt

#BEAR
!!bbwwwwwwwwwwwwwwbb	chr14:55529497-55529770(+)$1	273	183	203	21.5155
f[cccvvvvvvvvvvvvvcc	chr16:28877353-28877650(+)$1	297	28	48	21.4576
ddddvvvvvvvvvvvvvddd	chr12:7045320-7045571(+)$1	251	222	242	20.7017
ggggyyyyyyyyyyyyyyyy	chr19:42799007-42799376(+)$1	369	148	168	21.8477
eeeeettttttttttteeee	chr19:54969732-54969981(+)$1	249	211	231	19.2966
eeeeyyyyyyyyyyyyyyyy	chr1:33236668-33236940(+)$1	272	106	126	22.0179
ffffffuuuuuuuuuuuuff	chr9:126144143-126144411(-)$1	268	238	258	20.4331
ee[axxxxxxxxxxxxxxxa	chrM:15409-15629(+)$1	220	88	108	19.9004
!cccvvvvvvvvvvvvvccc	chr2:101611846-101612113(+)$1	267	49	69	21.5358
ffffwwwwwwwwwwwwwwff	chr12:49445433-49445756(-)$1	323	109	129	22.0895
cc!!auuuuuuuuuuuua22	chr17:45786044-45786361(+)$1	317	213	233	21.7961
gggggtttttttttttgggg	chr17:36891487-36891832(-)$1	345	43	63	18.5593
eeeevvvvvvvvvvvvveee	chr12:57919064-57919307(+)$1	243	206	226	21.5234
ddddyyyyyyyyyyyyyyyy	chr10:81058092-81058369(+)$1	277	184	204	21.4702
!cccwwwwwwwwwwwwwwcc	chr17:42398555-42398886(-)$1	331	243	263	22.5942
ggggwwwwwwwwwwwwwwgg	chr17:42475075-42475337(-)$1	262	21	41	22.4134
eeeeeuuuuuuuuuuuueee	chr12:49444440-49444649(-)$1	209	45	65	21.7800
hhhhyyyyyyyyyyyyyyyy	chr19:49132223-49132527(+)$1	304	163	183	21.1372
ddddwwwwwwwwwwwwwwdd	chr11:118769931-118770222(-)$1	291	123	143	21.9707
bcccwwwwwwwwwwwwwwcc	chr3:171965242-171965565(+)$1	323	60	80	22.2130
ddddwwwwwwwwwwwwwwdd	chr1:27736230-27736585(-)$1	355	3	23	21.9707
ffffwwwwwwwwwwwwwwff	chr5:140953088-140953484(-)$1	396	80	100	22.0895
ffffyyyyyyyyyyyyyyyy	chr4:2831181-2831478(+)$1	297	118	138	21.6263
eeeeyyyyyyyyyyyyyyyy	chr5:31526640-31526870(-)$1	230	131	151	22.0179
ee[axxxxxxxxxxxxxxxa	chrM:15429-15647(+)$1	218	68	88	19.9004
ddddxxxxxxxxxxxxxxxd	chr19:46394206-46394549(-)$1	343	211	231	19.4102
!cccvvvvvvvvvvvvvccc	chr6:30672937-30673184(-)$1	247	123	143	21.5358
ffffffuuuuuuuuuuuuff	chr16:685051-685383(-)$1	332	181	201	20.4331
eeeeettttttttttteeee	chr17:79225048-79225318(-)$1	270	180	200	19.2966
gggggvvvvvvvvvvvvvgg	chrX:70767565-70767871(+)$1	306	68	88	21.0884
eeeewwwwwwwwwwwwwwee	chr19:42753243-42753491(-)$1	248	73	93	22.6842
ffffffuuuuuuuuuuuuff	chrM:5331-5601(+)$1	270	229	249	20.4331
[cccvvvvvvvvvvvvvccc	chr19:15353984-15354350(-)$1	366	101	121	21.5620
c:cccvvvvvvvvvvvvvcc	chr7:1028326-1028639(+)$1	313	155	175	20.3371
===bbvvvvvvvvvvvvvbb	chrM:3470-3719(+)$1	249	196	216	20.6545
eeeeeuuuuuuuuuuuueee	chr2:27262450-27262723(+)$1	273	140	160	21.7800
eeeevvvvvvvvvvvvveee	chr8:145065386-145065622(+)$1	236	35	55	21.5234
iiiiwwwwwwwwwwwwwwii	chr12:7045269-7045500(+)$1	231	6	26	22.3419
ggggxxxxxxxxxxxxxxxg	chr17:36891428-36891687(-)$1	259	76	96	19.8464
eeeexxxxxxxxxxxxxxxe	chr3:48461423-48461770(-)$1	347	189	209	20.0274
eeeeyyyyyyyyyyyyyyyy	chr5:31526670-31526906(-)$1	236	167	187	22.0179
ffffwwwwwwwwwwwwwwff	chr3:169846595-169846900(-)$1	305	153	173	22.0895
fffcccuuuuuuuuuuuucc	chr6:33166964-33167295(-)$1	331	144	164	21.2837
d[bbvvvvvvvvvvvvvbb]	chr12:69652517-69652790(+)$1	273	101	121	20.3025
eeeewwwwwwwwwwwwwwee	chr17:7751243-7751502(+)$1	259	200	220	22.6842
eeeevvvvvvvvvvvvveee	chr16:50667231-50667467(+)$1	236	8	28	21.5234
ee!!bbuuuuuuuuuuuubb	chr16:28846403-28846609(+)$1	206	167	187	20.6669
ffffxxxxxxxxxxxxxxxf	chr12:49443974-49444215(-)$1	241	139	159	19.5585
!cccwwwwwwwwwwwwwwcc	chr7:73011777-73012027(-)$1	250	27	47	22.5942
ddddyyyyyyyyyyyyyyyy	chr19:36223084-36223360(+)$1	276	44	64	21.4702
[cccwwwwwwwwwwwwwwcc	chr1:169510673-169510923(-)$1	250	10	30	22.6203
:cccvvvvvvvvvvvvvccc	chr12:6442321-6442612(-)$1	291	164	184	20.3967
eeeeettttttttttteeee	chr1:16262372-16262659(+)$1	287	43	63	19.2966
d!!bbuuuuuuuuuuuubb2	chr5:137803409-137803735(+)$1	326	64	84	20.6990
[ccctttttttttttccc]d	chr12:122260778-122261123(+)$1	345	48	68	18.5909
cccxxxxxxxxxxxxxxxcc	chr19:48197564-48197970(+)$1	406	319	339	19.3433
[ddddvvvvvvvvvvvvvdd	chr19:36212053-36212312(+)$1	259	45	65	20.8095
ffffxxxxxxxxxxxxxxxf	chr12:7045613-7045880(+)$1	267	196	216	19.5585
ggggyyyyyyyyyyyyyyyy	chr1:8420948-8421244(-)$1	296	59	79	21.8477
eeeexxxxxxxxxxxxxxxe	chr12:57919161-57919435(+)$1	274	207	227	20.0274
fcccwwwwwwwwwwwwwwcc	chr6:31626716-31627047(+)$1	331	40	60	22.5376
iiiiwwwwwwwwwwwwwwii	chr17:46972812-46973128(+)$1	316	25	45	22.3419
eeeeyyyyyyyyyyyyyyyy	chr1:33236582-33236840(+)$1	258	192	212	22.0179
eeeevvvvvvvvvvvvveee	chr20:32250163-32250475(-)$1	312	141	161	21.5234
ggggauuuuuuuuuuuua]g	chr12:7045868-7046126(+)$1	258	205	225	22.3451
eeebbtttttttttttbb]e	chr16:30732488-30732743(+)$1	255	113	133	18.8192
iiiiiiuuuuuuuuuuuuii	chr19:54657645-54657922(+)$1	277	196	216	20.6074
ddddwwwwwwwwwwwwwwdd	chr19:36211831-36212159(+)$1	328	178	198	21.9707

#otherMatches

#Seq PSSM
CCCUUUCCAGAGCUACCCAG	chr14:55529497-55529770(+)$1	273	183	203	21.5155
ACAGGCUCCCCCUCUCCACC	chr16:28877353-28877650(+)$1	297	28	48	21.4576
GAGGUUUCCUUAUUCAUCCU	chr12:7045320-7045571(+)$1	251	222	242	20.7017
cugcccccacucccagcccc	chr19:42799007-42799376(+)$1	369	148	168	21.8477
UGGGGCCUCUUCUCCACCCC	chr19:54969732-54969981(+)$1	249	211	231	19.2966
GGUGCCUGCCCCCUUCUCCC	chr1:33236668-33236940(+)$1	272	106	126	22.0179
GGCCCCUCCAGCUUCCCUGG	chr9:126144143-126144411(-)$1	268	238	258	20.4331
GGCGACCCAGACAAUUAUAC	chrM:15409-15629(+)$1	220	88	108	19.9004
AGGACUCGCUACUUCUCUCC	chr2:101611846-101612113(+)$1	267	49	69	21.5358
CCUCUGUCCCCUCCACCUGA	chr12:49445433-49445756(-)$1	323	109	129	22.0895
gccucacccuccugcccguc	chr17:45786044-45786361(+)$1	317	213	233	21.7961
UGCCCACCCCCUCCGAGGGC	chr17:36891487-36891832(-)$1	345	43	63	18.5593
GCCUUUCCCACUCUAGCAGG	chr12:57919064-57919307(+)$1	243	206	226	21.5234
GUCAAACCACCCUUCCCGCC	chr10:81058092-81058369(+)$1	277	184	204	21.4702
UGUGAUCUCACUUCUCCCCA	chr17:42398555-42398886(-)$1	331	243	263	22.5942
CAUGCCAUCCUACAACAUCA	chr17:42475075-42475337(-)$1	262	21	41	22.4134
AAGAGCCCUUCUUUUUUCUC	chr12:49444440-49444649(-)$1	209	45	65	21.7800
UGCCCAUCCUGUCCCUCAAC	chr19:49132223-49132527(+)$1	304	163	183	21.1372
GCCCUCCCCCACCCCUCUGG	chr11:118769931-118770222(-)$1	291	123	143	21.9707
CCUUUUGUGUUUUUCUUUAG	chr3:171965242-171965565(+)$1	323	60	80	22.2130
GGGUUUGCUCCACCACCUGC	chr1:27736230-27736585(-)$1	355	3	23	21.9707
AGGUACUGCCAUCCCCCCAC	chr5:140953088-140953484(-)$1	396	80	100	22.0895
GCCCACUCCUUUACCUCCAA	chr4:2831181-2831478(+)$1	297	118	138	21.6263
CCUUUCCCCAACCACCAGAU	chr5:31526640-31526870(-)$1	230	131	151	22.0179
GGCGACCCAGACAAUUAUAC	chrM:15429-15647(+)$1	218	68	88	19.9004
ggccuccacccacgcucucg	chr19:46394206-46394549(-)$1	343	211	231	19.4102
CUGUCACCCCCAAGCCCACA	chr6:30672937-30673184(-)$1	247	123	143	21.5358
CUGGGCUCCCUGCCCCCCGC	chr16:685051-685383(-)$1	332	181	201	20.4331
CUGCUCCCUUCCCAUCAGCA	chr17:79225048-79225318(-)$1	270	180	200	19.2966
GAAGGAAUAAUGAUAUCACC	chrX:70767565-70767871(+)$1	306	68	88	21.0884
GCUGAGCCCGAUGUACCCCA	chr19:42753243-42753491(-)$1	248	73	93	22.6842
GUUGCAAUACUUAAUUUCUG	chrM:5331-5601(+)$1	270	229	249	20.4331
CGCUGCCCUGCCUCCCAAGC	chr19:15353984-15354350(-)$1	366	101	121	21.5620
UCCUGACCACUCCCCUCCCA	chr7:1028326-1028639(+)$1	313	155	175	20.3371
GUGAGCAUCAAACUCAAACU	chrM:3470-3719(+)$1	249	196	216	20.6545
GAGGCCCCCUUUACUUAGCC	chr2:27262450-27262723(+)$1	273	140	160	21.7800
GGGGACAACUAUCCUCCCCC	chr8:145065386-145065622(+)$1	236	35	55	21.5234
UGGGAACCUACCUUCUGCUC	chr12:7045269-7045500(+)$1	231	6	26	22.3419
CACUCCCCCUUCGACAGCCA	chr17:36891428-36891687(-)$1	259	76	96	19.8464
CUCCUGACACCCUUCCCGUG	chr3:48461423-48461770(-)$1	347	189	209	20.0274
CCUUUCCCCAACCACCAGAU	chr5:31526670-31526906(-)$1	236	167	187	22.0179
CAGUCCUCUCCAAUCCCAAU	chr3:169846595-169846900(-)$1	305	153	173	22.0895
AGGGAGUCCCUCCCCCUUCU	chr6:33166964-33167295(-)$1	331	144	164	21.2837
GACCACCUCCACCUCCAGGC	chr12:69652517-69652790(+)$1	273	101	121	20.3025
CCUGCCACCAAAAUACCUCA	chr17:7751243-7751502(+)$1	259	200	220	22.6842
CUUGACACCCCAAUCGCCAA	chr16:50667231-50667467(+)$1	236	8	28	21.5234
CACUGGUUCUCCCUCUUUCC	chr16:28846403-28846609(+)$1	206	167	187	20.6669
GGGGACCUUUCCUGCCCCGC	chr12:49443974-49444215(-)$1	241	139	159	19.5585
UGAGUUCUGAUUUCCUCCUU	chr7:73011777-73012027(-)$1	250	27	47	22.5942
ACUGACCCACCACAUCCCCA	chr19:36223084-36223360(+)$1	276	44	64	21.4702
CACUCUACUUCAGACCCCAG	chr1:169510673-169510923(-)$1	250	10	30	22.6203
CCCCUCCUGUAUUCUGUGGG	chr12:6442321-6442612(-)$1	291	164	184	20.3967
GCAGCCAGGGAAGGAAGCUG	chr1:16262372-16262659(+)$1	287	43	63	19.2966
guugcuaccucuuacccguc	chr5:137803409-137803735(+)$1	326	64	84	20.6990
UGCCCACUCCCCACUGGCCG	chr12:122260778-122261123(+)$1	345	48	68	18.5909
GGCAGCACCCCCCCCACCGC	chr19:48197564-48197970(+)$1	406	319	339	19.3433
AGCUGcccccuccuccccca	chr19:36212053-36212312(+)$1	259	45	65	20.8095
CCCCUUCCCUCCCUCUACUG	chr12:7045613-7045880(+)$1	267	196	216	19.5585
UGUUCCCCACACCCACAUCC	chr1:8420948-8421244(-)$1	296	59	79	21.8477
GGGCAAUGCCCCCUCUCCAG	chr12:57919161-57919435(+)$1	274	207	227	20.0274
UCCCUAUGCUUACAAUUUGG	chr6:31626716-31627047(+)$1	331	40	60	22.5376
CUGGCUCACUUAAACUUACC	chr17:46972812-46973128(+)$1	316	25	45	22.3419
GGUGCCUGCCCCCUUCUCCC	chr1:33236582-33236840(+)$1	258	192	212	22.0179
AGCUUUCUCUGCCCCCCAGC	chr20:32250163-32250475(-)$1	312	141	161	21.5234
CCUGCCCCCACCUCACAGCC	chr12:7045868-7046126(+)$1	258	205	225	22.3451
CUGAGCCCAGCCCCACCUCC	chr16:30732488-30732743(+)$1	255	113	133	18.8192
cagugccuccccuuugcagu	chr19:54657645-54657922(+)$1	277	196	216	20.6074
AACUCCUCCAUCUACCCCAG	chr19:36211831-36212159(+)$1	328	178	198	21.9707

#DB
..((..............))	chr14:55529497-55529770(+)$1	1	183	203	21.5155
(.(((.............))	chr16:28877353-28877650(+)$1	1	28	48	21.4576
((((.............)))	chr12:7045320-7045571(+)$1	1	222	242	20.7017
((((................	chr19:42799007-42799376(+)$1	1	148	168	21.8477
(((((...........))))	chr19:54969732-54969981(+)$1	1	211	231	19.2966
((((................	chr1:33236668-33236940(+)$1	1	106	126	22.0179
((((((............))	chr9:126144143-126144411(-)$1	1	238	258	20.4331
((.(...............)	chrM:15409-15629(+)$1	1	88	108	19.9004
.(((.............)))	chr2:101611846-101612113(+)$1	1	49	69	21.5358
((((..............))	chr12:49445433-49445756(-)$1	1	109	129	22.0895
((..(............)..	chr17:45786044-45786361(+)$1	1	213	233	21.7961
(((((...........))))	chr17:36891487-36891832(-)$1	1	43	63	18.5593
((((.............)))	chr12:57919064-57919307(+)$1	1	206	226	21.5234
((((................	chr10:81058092-81058369(+)$1	1	184	204	21.4702
.(((..............))	chr17:42398555-42398886(-)$1	1	243	263	22.5942
((((..............))	chr17:42475075-42475337(-)$1	1	21	41	22.4134
(((((............)))	chr12:49444440-49444649(-)$1	1	45	65	21.7800
((((................	chr19:49132223-49132527(+)$1	1	163	183	21.1372
((((..............))	chr11:118769931-118770222(-)$1	1	123	143	21.9707
((((..............))	chr3:171965242-171965565(+)$1	1	60	80	22.2130
((((..............))	chr1:27736230-27736585(-)$1	1	3	23	21.9707
((((..............))	chr5:140953088-140953484(-)$1	1	80	100	22.0895
((((................	chr4:2831181-2831478(+)$1	1	118	138	21.6263
((((................	chr5:31526640-31526870(-)$1	1	131	151	22.0179
((.(...............)	chrM:15429-15647(+)$1	1	68	88	19.9004
((((...............)	chr19:46394206-46394549(-)$1	1	211	231	19.4102
.(((.............)))	chr6:30672937-30673184(-)$1	1	123	143	21.5358
((((((............))	chr16:685051-685383(-)$1	1	181	201	20.4331
(((((...........))))	chr17:79225048-79225318(-)$1	1	180	200	19.2966
(((((.............))	chrX:70767565-70767871(+)$1	1	68	88	21.0884
((((..............))	chr19:42753243-42753491(-)$1	1	73	93	22.6842
((((((............))	chrM:5331-5601(+)$1	1	229	249	20.4331
.(((.............)))	chr19:15353984-15354350(-)$1	1	101	121	21.5620
).(((.............))	chr7:1028326-1028639(+)$1	1	155	175	20.3371
(((((.............))	chrM:3470-3719(+)$1	1	196	216	20.6545
(((((............)))	chr2:27262450-27262723(+)$1	1	140	160	21.7800
((((.............)))	chr8:145065386-145065622(+)$1	1	35	55	21.5234
((((..............))	chr12:7045269-7045500(+)$1	1	6	26	22.3419
((((...............)	chr17:36891428-36891687(-)$1	1	76	96	19.8464
((((...............)	chr3:48461423-48461770(-)$1	1	189	209	20.0274
((((................	chr5:31526670-31526906(-)$1	1	167	187	22.0179
((((..............))	chr3:169846595-169846900(-)$1	1	153	173	22.0895
((((((............))	chr6:33166964-33167295(-)$1	1	144	164	21.2837
(.((.............)).	chr12:69652517-69652790(+)$1	1	101	121	20.3025
((((..............))	chr17:7751243-7751502(+)$1	1	200	220	22.6842
((((.............)))	chr16:50667231-50667467(+)$1	1	8	28	21.5234
((..((............))	chr16:28846403-28846609(+)$1	1	167	187	20.6669
((((...............)	chr12:49443974-49444215(-)$1	1	139	159	19.5585
.(((..............))	chr7:73011777-73012027(-)$1	1	27	47	22.5942
((((................	chr19:36223084-36223360(+)$1	1	44	64	21.4702
.(((..............))	chr1:169510673-169510923(-)$1	1	10	30	22.6203
.(((.............)))	chr12:6442321-6442612(-)$1	1	164	184	20.3967
(((((...........))))	chr1:16262372-16262659(+)$1	1	43	63	19.2966
(..((............)).	chr5:137803409-137803735(+)$1	1	64	84	20.6990
.(((...........))).)	chr12:122260778-122261123(+)$1	1	48	68	18.5909
(((...............))	chr19:48197564-48197970(+)$1	1	319	339	19.3433
.((((.............))	chr19:36212053-36212312(+)$1	1	45	65	20.8095
((((...............)	chr12:7045613-7045880(+)$1	1	196	216	19.5585
((((................	chr1:8420948-8421244(-)$1	1	59	79	21.8477
((((...............)	chr12:57919161-57919435(+)$1	1	207	227	20.0274
((((..............))	chr6:31626716-31627047(+)$1	1	40	60	22.5376
((((..............))	chr17:46972812-46973128(+)$1	1	25	45	22.3419
((((................	chr1:33236582-33236840(+)$1	1	192	212	22.0179
((((.............)))	chr20:32250163-32250475(-)$1	1	141	161	21.5234
(((((............).)	chr12:7045868-7046126(+)$1	1	205	225	22.3451
(((((...........)).)	chr16:30732488-30732743(+)$1	1	113	133	18.8192
((((((............))	chr19:54657645-54657922(+)$1	1	196	216	20.6074
((((..............))	chr19:36211831-36212159(+)$1	1	178	198	21.9707

#PSSM
e : 0.30	f : 0.17	d : 0.13	g : 0.10	! : 0.07	[ : 0.05	c : 0.04	i : 0.04	h : 0.01	b : 0.01	= : 0.01	: : 0.01	
e : 0.30	c : 0.17	f : 0.14	d : 0.11	g : 0.10	i : 0.04	! : 0.02	[ : 0.02	h : 0.01	: : 0.01	= : 0.01	
e : 0.26	c : 0.19	f : 0.14	d : 0.11	g : 0.10	! : 0.04	i : 0.04	b : 0.02	[ : 0.02	h : 0.01	= : 0.01	
e : 0.25	c : 0.19	f : 0.13	d : 0.11	g : 0.10	b : 0.07	i : 0.04	a : 0.02	! : 0.02	h : 0.01	x : 0.01	
w : 0.25	v : 0.14	y : 0.14	x : 0.13	e : 0.07	b : 0.05	c : 0.04	f : 0.04	a : 0.02	g : 0.02	t : 0.01	d : 0.01	i : 0.01	
w : 0.25	v : 0.22	y : 0.14	x : 0.13	t : 0.08	u : 0.07	f : 0.04	c : 0.01	b : 0.01	i : 0.01	
w : 0.25	v : 0.22	u : 0.16	y : 0.14	x : 0.13	t : 0.08	
w : 0.25	v : 0.22	u : 0.16	y : 0.14	x : 0.13	t : 0.08	
w : 0.25	v : 0.22	u : 0.16	y : 0.14	x : 0.13	t : 0.08	
w : 0.25	v : 0.22	u : 0.16	y : 0.14	x : 0.13	t : 0.08	
w : 0.25	v : 0.22	u : 0.16	y : 0.14	x : 0.13	t : 0.08	
w : 0.25	v : 0.22	u : 0.16	y : 0.14	x : 0.13	t : 0.08	
w : 0.25	v : 0.22	u : 0.16	y : 0.14	x : 0.13	t : 0.08	
w : 0.25	v : 0.22	u : 0.16	y : 0.14	x : 0.13	t : 0.08	
w : 0.25	v : 0.22	u : 0.16	y : 0.14	x : 0.13	t : 0.08	
w : 0.25	v : 0.22	u : 0.16	y : 0.14	x : 0.13	t : 0.07	c : 0.01	
w : 0.25	v : 0.22	u : 0.16	y : 0.14	x : 0.13	e : 0.04	g : 0.01	c : 0.01	b : 0.01	
w : 0.25	y : 0.14	e : 0.13	x : 0.13	u : 0.08	v : 0.07	c : 0.07	b : 0.04	a : 0.02	d : 0.01	g : 0.01	
c : 0.19	e : 0.16	y : 0.14	x : 0.11	f : 0.08	b : 0.07	d : 0.07	g : 0.04	i : 0.04	] : 0.04	2 : 0.01	
e : 0.20	c : 0.19	y : 0.14	f : 0.11	d : 0.10	g : 0.07	b : 0.04	i : 0.04	a : 0.02	2 : 0.02	] : 0.01	

#score	1436.3600397039893
#seq	68
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_CDS_m1_run1.txt

#BEAR
gggg[a[ccc!!ccc[aooooooaccccccaggggggg>	chr19:12841737-12841981(-)$1	244	164	203	17.2929
GGG:iiiiiiiii[cccooooooccc22iiiiiiiii:h	chr14:21484915-21485227(-)$1	312	149	188	14.3212
eeeccc!!iiiiiiiiirrrrrrrrriiiiiiiiiccc:	chr19:51162104-51162387(+)$1	283	219	258	12.6527
eeeee!!ffffff[a[aooooooa]a]ffffff333eee	chr22:39917890-39918101(+)$1	211	16	55	14.7765
===================mmmm================	chr8:67968693-67968940(-)$1	247	5	44	15.6659
:a[ccc[ccc[a[bbcccmmmmccc]bb]a]cccccc]a	chr6:32146154-32146452(+)$1	298	258	297	11.8115
ee[a!!ccc"""ccc!!ccclllccc]ccc4444ccca]	chrX:47518175-47518436(-)$1	261	38	77	14.6348
cciiiiiiiii!!ddddmmmmdddd333iiiiiiiii]c	chr19:17387524-17387801(+)$1	277	222	261	13.5647
eeeee!!ffffff[a[aooooooa]a]ffffff333eee	chr22:39917901-39918135(+)$1	234	5	44	14.7765
b[bb[dddd$$$$$ccc[aooooooa]ccc333dddd]b	chr2:70515100-70515370(-)$1	270	133	172	13.3196
[bb[eeeee!!ccc"""ccclllccc333ccceeeee]b	chr12:53689569-53689790(+)$1	221	94	133	13.7055
%%===========[cccooooooccc]===========]	chr11:61641159-61641418(-)$1	259	16	55	18.2556
iiiiii[ccc[a[a[bboooooobba]accciiiiiiii	chr1:228680736-228681023(+)$1	287	40	79	18.8122
ccc[bb[iiiiiiiii!!bblllbb22iiiiiiiii333	chr19:3767158-3767380(+)$1	222	48	87	14.1859
:dddd[ggggggg!!bboooooobb]ggggggg]dddd:	chr17:38153980-38154244(+)$1	264	177	216	13.7706
cccc[aa[ccc!!a[bboooooobb]a22ccc]a]a]cc	chr21:33975366-33975628(-)$1	262	24	63	16.6859
:eeeee!!ccc"""cccooooooccc4444ccc]eeeee	chr19:35514053-35514302(+)$1	249	110	149	15.9536
"""ffffff[bb[ddddooooooddddbb]ffffff333	chr16:30134299-30134609(-)$1	310	247	286	12.8444
=======[bbccc[cccooooooccc]ccc333bb]===	chr4:2043660-2043878(+)$1	218	106	145	17.6434
ff!!==========[cccnnnnnccc]==========88	chr11:66373080-66373340(+)$1	260	36	75	15.1259
cccggggggg!!a!!cccmmmmccc22a22ggggggg]c	chr22:35817209-35817487(+)$1	278	54	93	13.5223
d[bb[ggggggg[ddddooooooddddggggggg]bb]d	chr19:19626934-19627199(+)$1	265	222	261	14.3591
ccc"""cccccc"""bboooooobb22ccc]ccc]ccc]	chr9:139886990-139887244(+)$1	254	71	110	17.1050
[bb[eeeee!!ccc"""ccclllccc333ccceeeee]b	chr12:53689590-53689813(+)$1	223	73	112	13.7055
!cccdddd[ccc[ddddoooooodddd]ccc22dddd]c	chr19:38746838-38747105(-)$1	267	131	170	14.1178
eeeee!!ccc"""cccooooooccc4444ccc]eeeee>	chr19:35514102-35514348(+)$1	246	62	101	15.9342
[bb[eeeee!!ccc"""ccclllccc333ccceeeee]b	chr12:53689529-53689744(+)$1	215	134	173	13.7055
iiiiiiii[a[a[ddddoooooodddd]aaiiiiiiiii	chr11:67817857-67818127(+)$1	270	152	191	16.8116
FFeeeee[gggggggbboooooobb333ggggggg]eee	chr22:19865509-19865747(-)$1	238	185	224	15.4087
c!!a!!ccc!!ccc[arrrrrrrrra]ccc22ccc22a]	chr1:880334-880585(-)$1	251	74	113	13.5513
####bb!!bb[a[ccc[aooooooa]ccc]a333bb444	chr19:7684538-7684793(-)$1	255	121	160	15.9984
$$$$$dddd[ccc[cccooooooccc]cccdddd4444d	chr22:19163542-19163794(-)$1	252	41	80	14.3468
eeeee[dddd[abb[cccnnnnnccc333bb]a]dddd]	chr12:132335591-132335935(+)$1	344	60	99	12.1915
##bb[iiiiiiiii[bbrrrrrrrrrbb]iiiiiiiii2	chr16:685177-685398(-)$1	221	12	51	13.3013
ccc[bb[a!!gggggggooooooggggggg22abb]ccc	chr15:91496825-91497125(+)$1	300	26	65	14.5493
eeeee!!cccbb[eeeeeooooooeeeee]bb333ccc2	chr16:67262778-67263047(+)$1	269	10	49	12.8535
[eeeee[ccc[iiiiiiiiillliiiiiiiii]ccc]ee	chr1:44443549-44443780(+)$1	231	130	169	13.8148
iiiiiiii[a[a[ddddoooooodddd]aaiiiiiiiii	chr11:67817938-67818227(+)$1	289	71	110	16.8116
!!dddd[bb!!ccc[bboooooobb]ccc]bb333dddd	chr19:8576418-8576686(-)$1	268	107	146	15.4196
bb[bb!!ccc"""a[aooooooa]a4444ccc22bb]bb	chr19:49611410-49611720(+)$1	310	100	139	15.3569
hhhhhhh"""ddddcccooooooccc]dddd333hhhhh	chr8:145161638-145161865(+)$1	227	42	81	14.0368
======!!bb[bbdddd[aooooooa]dddd333bbbb=	chr19:38746762-38747038(-)$1	276	103	142	13.5635
=====####eeeee[arrrrrrrrra]eeeee22=====	chr17:7306875-7307109(-)$1	234	90	129	12.3367
[a[ggggggg[a####cccmmmmccc333a]ggggggg]	chr11:65421934-65422253(-)$1	319	271	310	15.0462
ee[===========[bbnnnnnbb]===========]ee	chr16:83842809-83843128(+)$1	319	220	259	14.4010
gggggg[ccc!!bb"""ccclllccc22bb]cccggggg	chr6:33258019-33258305(+)$1	286	129	168	13.8599
ggggggg!!cccbb[bboooooobb]bb]ccc22ggggg	chr1:19948492-19948742(+)$1	250	108	147	15.7099
cc[ccc[ccc!!ccc!!bbmmmmbb22ccc22ccc]ccc	chr5:1814464-1814676(+)$1	212	114	153	12.7860
[bb[bb[bbccc[cccoooooocccccc]bb]bb4444b	chr9:139566432-139566640(+)$1	208	44	83	13.4754
cc[ccc####ccc!!bboooooobb22ccc]ccc]ccc2	chr16:223383-223637(+)$1	254	53	92	16.8496
ff:iiiiiiiii"""bboooooobbiiiiiiiiicccoo	chr6:31526032-31526341(+)$1	309	165	204	15.8923
::iiiiiiiiiddddbboooooobb]dddd]iiiiiiii	chr1:76260097-76260363(+)$1	266	85	124	14.3349

#otherMatches

#Seq PSSM
CCAGUGCGGUGACGAUGAUAAAACUCGGCCCCUGGUGAA	chr19:12841737-12841981(-)$1	244	164	203	17.2929
GGGAGCUAAGCUUGGGCUGGGCUGCUUGGGGCUUGGCAU	chr14:21484915-21485227(-)$1	312	149	188	14.3212
CCUGCACCUGCGCCGCUCCCUGGUCCGGCGGCGCAUGCU	chr19:51162104-51162387(+)$1	283	219	258	12.6527
CUUGUGAUCUCUUUGCCCCCCUAGUCCAGGAGACUAAUA	chr22:39917890-39918101(+)$1	211	16	55	14.7765
auauauauauauauauauauauauauauauauauauaua	chr8:67968693-67968940(-)$1	247	5	44	15.6659
GUGGCCACCUGUACUGGUGAGAAUCGAGGAGGGGGGCGG	chr6:32146154-32146452(+)$1	298	258	297	11.8115
AUGAACUGUGUGUGAGGCCAAACUGGAUCGGUCAACAUG	chrX:47518175-47518436(-)$1	261	38	77	14.6348
AGGCGGGUGUGGACAGGAUGUCUUGGAACACACCUGCAC	chr19:17387524-17387801(+)$1	277	222	261	13.5647
CUUGUGAUCUCUUUGCCCCCCUAGUCCAGGAGACUAAUA	chr22:39917901-39918135(+)$1	234	5	44	14.7765
UGGCGACUAGUGGACAACAGAACAAUAUUGGAAUGGUGG	chr2:70515100-70515370(-)$1	270	133	172	13.3196
GGUACAGACCAAGUAUGUGGAAGCCAAGGACUGUCUGAA	chr12:53689569-53689790(+)$1	221	94	133	13.7055
AGGGGUGUUAGGAUCUUGCAACUGAGCUCCUAACACCCA	chr11:61641159-61641418(-)$1	259	16	55	18.2556
GAAGGCACUGACCGACUACAAGAAGCUGCGGGCCUUCUU	chr1:228680736-228681023(+)$1	287	40	79	18.8122
GGGAGCCCAGGGGUCACCGUGUAGCUCUGAUUCCUGCCC	chr19:3767158-3767380(+)$1	222	48	87	14.1859
AUGUUUUUUGAAGCUUCGAUUAUGAUUUUUAAACAAUAA	chr17:38153980-38154244(+)$1	264	177	216	13.7706
AGGCAGGGCUCAACGUCAUUAAAGAGGCAGAGGCGCAGC	chr21:33975366-33975628(-)$1	262	24	63	16.6859
CGUCCUGCUCUUCUACCGCCUCUGGUCCCUGGAAAGGAC	chr19:35514053-35514302(+)$1	249	110	149	15.9536
AGGUGAGGGGGCGUUCCGGGGGAGGGGGUGCCCUCAGGG	chr16:30134299-30134609(-)$1	310	247	286	12.8444
GCUGCUGGUCCCGGGGUCCCUGAACCGCGGUAAGGGCGG	chr4:2043660-2043878(+)$1	218	106	145	17.6434
AACCCAGGGGUGGGGGCCAAACAGGUACCCACCCCUGAC	chr11:66373080-66373340(+)$1	260	36	75	15.1259
GGGAAUAGCGGACCGAGGCUACCCUGAGCACGCUGUUGC	chr22:35817209-35817487(+)$1	278	54	93	13.5223
CGCCGGGGUCUCAGAGUCUGGGCACUCGGGGCUCGGGGG	chr19:19626934-19627199(+)$1	265	222	261	14.3591
CGGCCCCGCCUGACAGGCCUUCUCCCCCAGCGUGACCGA	chr9:139886990-139887244(+)$1	254	71	110	17.1050
GGUACAGACCAAGUAUGUGGAAGCCAAGGACUGUCUGAA	chr12:53689590-53689813(+)$1	223	73	112	13.7055
AGCUCAGCGGCUGGGCAAGCGCGUGCUGAGCAAGCUGCA	chr19:38746838-38747105(-)$1	267	131	170	14.1178
GUCCUGCUCUUCUACCGCCUCUGGUCCCUGGAAAGGACA	chr19:35514102-35514348(+)$1	246	62	101	15.9342
GGUACAGACCAAGUAUGUGGAAGCCAAGGACUGUCUGAA	chr12:53689529-53689744(+)$1	215	134	173	13.7055
GAGGUGGGCGUGGCGGCUGUGGUGCUGGUCCCCAUCUUU	chr11:67817857-67818127(+)$1	270	152	191	16.8116
UCGAGUGCCGGCAGUCCUACAGUGGAGAGCUGCUGCCAC	chr22:19865509-19865747(-)$1	238	185	224	15.4087
UGAGCACUCGGCAUgggguggaagacgaugaagaggacg	chr1:880334-880585(-)$1	251	74	113	13.5513
GAGGACGAGGACGAGGACGAGAUGGACCUGGAGCCCAAC	chr19:7684538-7684793(-)$1	255	121	160	15.9984
UACAAGGGCACUGUCCCCCGCCUGGGCCGGGUCUGCCUG	chr22:19163542-19163794(-)$1	252	41	80	14.3468
CAUGACCAGAGCCGCUCGGAGGACGGUUACGAGGUCUGC	chr12:132335591-132335935(+)$1	344	60	99	12.1915
UCUGUUGGGGGCAGCACCUCACUGCCGUCCUGUUCCUAC	chr16:685177-685398(-)$1	221	12	51	13.3013
AGGGUGACCACAGCCCUGUCACAAGGGCUGCUGCAGCCU	chr15:91496825-91497125(+)$1	300	26	65	14.5493
GUGGGCUGGGGGCGCUCCCAAGAAGGGGCAUCUAACCCU	chr16:67262778-67263047(+)$1	269	10	49	12.8535
AUGAUAUGUGUGGGUGGGGCCGUGCCUCACUUUUAUUUA	chr1:44443549-44443780(+)$1	231	130	169	13.8148
GAGGUGGGCGUGGCGGCUGUGGUGCUGGUCCCCAUCUUU	chr11:67817938-67818227(+)$1	289	71	110	16.8116
CCCCCGCGCCUGCGCCCCUUCCUGGCCGCUGCACCCGGG	chr19:8576418-8576686(-)$1	268	107	146	15.4196
ccgcgagcacaaacggggggagcggggcagugagcgggg	chr19:49611410-49611720(+)$1	310	100	139	15.3569
GGGCCAGCAGCAGGCCUGGGUAGGGGUCCUGAAACUGGU	chr8:145161638-145161865(+)$1	227	42	81	14.0368
GUCUCCAUCGCGGGCCCGCGGGCCAGGGGGCAGUCCCGG	chr19:38746762-38747038(-)$1	276	103	142	13.5635
UUUCUCCACAGGCGCCCAAUUCCCAGAUGCCUACGGGAA	chr17:7306875-7307109(-)$1	234	90	129	12.3367
AGAGGCCCCCCGACCCAGCUCCUGCUCCACUGGGGGCCC	chr11:65421934-65422253(-)$1	319	271	310	15.0462
GGUGAGGAAGGGGGCAAuuuuuuuuuucuuuucuuuucu	chr16:83842809-83843128(+)$1	319	220	259	14.4010
GUCCGGUGCUAGUCAAACAGGAGCUGGGGGAGGCUCGGG	chr6:33258019-33258305(+)$1	286	129	168	13.8599
UUUUGGAUUAGGAAUUGUUUUCUCACUUACCUUCUUUAA	chr1:19948492-19948742(+)$1	250	108	147	15.7099
CGUAGCUGGCCACCUGUGCACAUGUUAGGGCAGCCUGCU	chr5:1814464-1814676(+)$1	212	114	153	12.7860
CAGCUCGGCCGCAUCGACUCCCUGAGCGAGCAGAUUUCC	chr9:139566432-139566640(+)$1	208	44	83	13.4754
GGCCUGGGCCGCACUGACCCUCUUCUCUGCACAGCUCCU	chr16:223383-223637(+)$1	254	53	92	16.8496
CCAGGGGCCCCCCUUUGGAGGAACAGGGGGCUCUGAGGA	chr6:31526032-31526341(+)$1	309	165	204	15.8923
UUUUUUAAAUAGGUGGAUCCUUUUCAUACCUUAUUUGGA	chr1:76260097-76260363(+)$1	266	85	124	14.3349

#DB
((((.(.(((..(((.(......))))))))))))))).	chr19:12841737-12841981(-)$1	1	164	203	17.2929
(((.(((((((((.(((......)))..))))))))).(	chr14:21484915-21485227(-)$1	1	149	188	14.3212
)))(((..(((((((((.........)))))))))))).	chr19:51162104-51162387(+)$1	1	219	258	12.6527
(((((..((((((.(.(......).).))))))...)))	chr22:39917890-39918101(+)$1	1	16	55	14.7765
(((((((((((((((((((....))))))))))))))))	chr8:67968693-67968940(-)$1	1	5	44	15.6659
.(.(((.(((.(.(((((....))).)).).)))))).)	chr6:32146154-32146452(+)$1	1	258	297	11.8115
((.(..(((...(((..(((...))).)))....)))).	chrX:47518175-47518436(-)$1	1	38	77	14.6348
(((((((((((..((((....))))...))))))))).)	chr19:17387524-17387801(+)$1	1	222	261	13.5647
(((((..((((((.(.(......).).))))))...)))	chr22:39917901-39918135(+)$1	1	5	44	14.7765
(.((.((((.....(((.(......).)))...)))).)	chr2:70515100-70515370(-)$1	1	133	172	13.3196
.((.(((((..(((...(((...)))...)))))))).)	chr12:53689569-53689790(+)$1	1	94	133	13.7055
..(((((((((((.(((......))).))))))))))).	chr11:61641159-61641418(-)$1	1	16	55	18.2556
((((((.(((.(.(.((......))).))))))))))))	chr1:228680736-228681023(+)$1	1	40	79	18.8122
(((.((.(((((((((..((...))..)))))))))...	chr19:3767158-3767380(+)$1	1	48	87	14.1859
.((((.(((((((..((......)).))))))).)))).	chr17:38153980-38154244(+)$1	1	177	216	13.7706
((((.((.(((..(.((......)).)..))).).).))	chr21:33975366-33975628(-)$1	1	24	63	16.6859
.(((((..(((...(((......)))....))).)))))	chr19:35514053-35514302(+)$1	1	110	149	15.9536
...((((((.((.((((......)))))).))))))...	chr16:30134299-30134609(-)$1	1	247	286	12.8444
(((((((.(((((.(((......))).)))...)).)))	chr4:2043660-2043878(+)$1	1	106	145	17.6434
((..((((((((((.(((.....))).))))))))))..	chr11:66373080-66373340(+)$1	1	36	75	15.1259
((((((((((..(..(((....)))..)..))))))).)	chr22:35817209-35817487(+)$1	1	54	93	13.5223
(.((.(((((((.((((......))))))))))).)).)	chr19:19626934-19627199(+)$1	1	222	261	14.3591
(((...((((((...((......))..))).))).))).	chr9:139886990-139887244(+)$1	1	71	110	17.1050
.((.(((((..(((...(((...)))...)))))))).)	chr12:53689590-53689813(+)$1	1	73	112	13.7055
.(((((((.(((.((((......)))).)))..)))).)	chr19:38746838-38747105(-)$1	1	131	170	14.1178
(((((..(((...(((......)))....))).))))).	chr19:35514102-35514348(+)$1	1	62	101	15.9342
.((.(((((..(((...(((...)))...)))))))).)	chr12:53689529-53689744(+)$1	1	134	173	13.7055
((((((((.(.(.((((......)))).)))))))))))	chr11:67817857-67818127(+)$1	1	152	191	16.8116
))(((((.(((((((((......))...))))))).)))	chr22:19865509-19865747(-)$1	1	185	224	15.4087
(..(..(((..(((.(.........).)))..)))..).	chr1:880334-880585(-)$1	1	74	113	13.5513
....((..((.(.(((.(......).))).)...))...	chr19:7684538-7684793(-)$1	1	121	160	15.9984
.....((((.(((.(((......))).)))))))....)	chr22:19163542-19163794(-)$1	1	41	80	14.3468
(((((.((((.(((.(((.....)))...)).).)))).	chr12:132335591-132335935(+)$1	1	60	99	12.1915
..((.(((((((((.((.........)).))))))))).	chr16:685177-685398(-)$1	1	12	51	13.3013
(((.((.(..(((((((......)))))))..))).)))	chr15:91496825-91497125(+)$1	1	26	65	14.5493
(((((..(((((.(((((......))))).))...))).	chr16:67262778-67263047(+)$1	1	10	49	12.8535
.(((((.(((.(((((((((...))))))))).))).))	chr1:44443549-44443780(+)$1	1	130	169	13.8148
((((((((.(.(.((((......)))).)))))))))))	chr11:67817938-67818227(+)$1	1	71	110	16.8116
..((((.((..(((.((......)).))).))...))))	chr19:8576418-8576686(-)$1	1	107	146	15.4196
((.((..(((...(.(......).)....)))..)).))	chr19:49611410-49611720(+)$1	1	100	139	15.3569
(((((((...(((((((......))).))))...)))))	chr8:145161638-145161865(+)$1	1	42	81	14.0368
((((((..((.((((((.(......).))))...)))))	chr19:38746762-38747038(-)$1	1	103	142	13.5635
(((((....(((((.(.........).)))))..)))))	chr17:7306875-7307109(-)$1	1	90	129	12.3367
.(.(((((((.(....(((....)))...).))))))).	chr11:65421934-65422253(-)$1	1	271	310	15.0462
((.(((((((((((.((.....)).))))))))))).))	chr16:83842809-83843128(+)$1	1	220	259	14.4010
((((((.(((..((...(((...)))..)).))))))))	chr6:33258019-33258305(+)$1	1	129	168	13.8599
(((((((..(((((.((......)).)).)))..)))))	chr1:19948492-19948742(+)$1	1	108	147	15.7099
((.(((.(((..(((..((....))..)))..))).)))	chr5:1814464-1814676(+)$1	1	114	153	12.7860
.((.((.(((((.(((......)))))).)).))....)	chr9:139566432-139566640(+)$1	1	44	83	13.4754
((.(((....(((..((......))..))).))).))).	chr16:223383-223637(+)$1	1	53	92	16.8496
)).(((((((((...((......)))))))))))(((..	chr6:31526032-31526341(+)$1	1	165	204	15.8923
..(((((((((((((((......)).)))).))))))))	chr1:76260097-76260363(+)$1	1	85	124	14.3349

#PSSM
c : 0.17	e : 0.15	[ : 0.11	= : 0.07	: : 0.07	g : 0.05	i : 0.05	b : 0.03	f : 0.03	! : 0.03	# : 0.03	G : 0.01	% : 0.01	" : 0.01	d : 0.01	F : 0.01	$ : 0.01	h : 0.01	
e : 0.19	c : 0.17	b : 0.09	= : 0.07	g : 0.05	i : 0.05	a : 0.03	[ : 0.03	f : 0.03	! : 0.03	# : 0.03	G : 0.01	% : 0.01	d : 0.01	" : 0.01	F : 0.01	$ : 0.01	h : 0.01	: : 0.01	
e : 0.17	[ : 0.13	b : 0.13	c : 0.11	= : 0.09	i : 0.09	g : 0.05	d : 0.03	! : 0.03	G : 0.01	" : 0.01	# : 0.01	$ : 0.01	h : 0.01	: : 0.01	
e : 0.15	c : 0.11	= : 0.11	i : 0.11	[ : 0.11	g : 0.09	b : 0.07	a : 0.03	d : 0.03	: : 0.01	f : 0.01	! : 0.01	" : 0.01	# : 0.01	$ : 0.01	h : 0.01	
e : 0.21	i : 0.13	= : 0.13	[ : 0.09	b : 0.09	c : 0.07	g : 0.07	d : 0.05	! : 0.03	f : 0.01	" : 0.01	$ : 0.01	h : 0.01	
i : 0.15	! : 0.13	= : 0.11	e : 0.11	g : 0.09	c : 0.07	d : 0.07	b : 0.07	a : 0.03	[ : 0.03	f : 0.01	" : 0.01	h : 0.01	# : 0.01	
[ : 0.19	! : 0.17	i : 0.13	= : 0.09	g : 0.09	d : 0.07	e : 0.07	c : 0.05	# : 0.03	a : 0.01	f : 0.01	h : 0.01	
c : 0.23	i : 0.15	! : 0.09	= : 0.07	d : 0.07	g : 0.07	f : 0.05	e : 0.05	[ : 0.05	b : 0.03	# : 0.03	a : 0.01	" : 0.01	
c : 0.26	i : 0.13	g : 0.09	b : 0.09	= : 0.07	f : 0.05	d : 0.05	e : 0.05	[ : 0.05	! : 0.03	# : 0.03	" : 0.01	
c : 0.28	i : 0.13	! : 0.11	g : 0.09	= : 0.07	b : 0.05	f : 0.03	" : 0.03	[ : 0.03	a : 0.03	$ : 0.01	d : 0.01	e : 0.01	# : 0.01	
! : 0.17	[ : 0.17	c : 0.17	i : 0.13	= : 0.07	g : 0.07	" : 0.05	f : 0.03	b : 0.03	$ : 0.01	d : 0.01	e : 0.01	
c : 0.23	a : 0.13	! : 0.11	i : 0.11	= : 0.07	" : 0.07	g : 0.07	b : 0.05	f : 0.03	d : 0.03	$ : 0.01	e : 0.01	
c : 0.21	[ : 0.19	i : 0.09	" : 0.09	= : 0.07	b : 0.07	g : 0.05	f : 0.03	! : 0.03	d : 0.03	$ : 0.01	a : 0.01	e : 0.01	# : 0.01	
c : 0.21	d : 0.17	[ : 0.11	i : 0.07	b : 0.07	= : 0.05	a : 0.05	! : 0.05	" : 0.05	g : 0.03	e : 0.03	$ : 0.01	# : 0.01	
c : 0.24	[ : 0.21	d : 0.15	" : 0.11	i : 0.05	! : 0.05	a : 0.03	g : 0.03	= : 0.01	b : 0.01	e : 0.01	# : 0.01	
c : 0.26	b : 0.23	d : 0.13	" : 0.07	[ : 0.05	i : 0.05	a : 0.05	! : 0.03	= : 0.01	g : 0.01	e : 0.01	# : 0.01	
c : 0.23	b : 0.23	d : 0.13	" : 0.07	a : 0.05	! : 0.05	o : 0.05	i : 0.03	r : 0.03	= : 0.01	[ : 0.01	g : 0.01	e : 0.01	
o : 0.53	c : 0.19	r : 0.07	[ : 0.03	= : 0.01	m : 0.01	! : 0.01	a : 0.01	e : 0.01	i : 0.01	n : 0.01	b : 0.01	
o : 0.57	c : 0.11	r : 0.07	m : 0.05	n : 0.05	a : 0.03	b : 0.03	= : 0.01	i : 0.01	
o : 0.61	m : 0.11	c : 0.09	r : 0.07	n : 0.05	b : 0.01	i : 0.01	
o : 0.61	l : 0.13	m : 0.11	r : 0.07	n : 0.05	
o : 0.61	l : 0.13	m : 0.09	r : 0.07	n : 0.05	d : 0.01	
o : 0.55	l : 0.13	r : 0.07	c : 0.07	m : 0.05	n : 0.03	d : 0.01	a : 0.01	b : 0.01	
c : 0.34	b : 0.24	d : 0.11	r : 0.07	o : 0.07	a : 0.05	= : 0.01	g : 0.01	i : 0.01	] : 0.01	
c : 0.36	b : 0.23	d : 0.11	r : 0.07	] : 0.05	o : 0.03	a : 0.03	= : 0.01	g : 0.01	e : 0.01	i : 0.01	
c : 0.30	a : 0.13	] : 0.13	2 : 0.09	d : 0.09	r : 0.03	= : 0.03	3 : 0.03	4 : 0.03	i : 0.03	g : 0.01	e : 0.01	
] : 0.24	2 : 0.13	3 : 0.13	d : 0.11	c : 0.07	i : 0.05	b : 0.05	4 : 0.05	= : 0.03	g : 0.03	a : 0.01	e : 0.01	
c : 0.23	3 : 0.13	i : 0.07	= : 0.07	b : 0.07	2 : 0.05	g : 0.05	4 : 0.05	] : 0.05	d : 0.05	f : 0.03	a : 0.03	e : 0.03	
c : 0.24	i : 0.11	3 : 0.09	= : 0.07	] : 0.07	g : 0.07	4 : 0.05	d : 0.05	f : 0.03	2 : 0.03	b : 0.03	a : 0.03	e : 0.03	
c : 0.34	i : 0.13	= : 0.07	a : 0.07	g : 0.07	] : 0.07	b : 0.05	d : 0.05	f : 0.03	4 : 0.01	2 : 0.01	e : 0.01	
c : 0.19	i : 0.17	] : 0.11	= : 0.07	g : 0.07	b : 0.07	f : 0.05	2 : 0.05	d : 0.05	a : 0.03	3 : 0.03	4 : 0.01	e : 0.01	
c : 0.23	i : 0.21	g : 0.11	3 : 0.09	= : 0.07	2 : 0.07	f : 0.05	] : 0.03	b : 0.03	4 : 0.01	d : 0.01	e : 0.01	
i : 0.19	c : 0.13	3 : 0.13	g : 0.11	= : 0.07	2 : 0.07	f : 0.05	e : 0.05	] : 0.05	a : 0.03	4 : 0.01	d : 0.01	b : 0.01	
i : 0.19	3 : 0.13	c : 0.13	g : 0.09	= : 0.07	e : 0.07	d : 0.05	] : 0.05	b : 0.05	2 : 0.05	4 : 0.01	a : 0.01	f : 0.01	
i : 0.17	g : 0.11	c : 0.11	= : 0.09	e : 0.09	b : 0.09	3 : 0.07	d : 0.07	] : 0.07	4 : 0.03	f : 0.01	h : 0.01	
i : 0.15	c : 0.15	g : 0.09	= : 0.09	d : 0.09	e : 0.09	] : 0.07	b : 0.07	3 : 0.03	4 : 0.03	a : 0.01	f : 0.01	2 : 0.01	h : 0.01	
c : 0.17	e : 0.15	i : 0.13	g : 0.09	= : 0.09	d : 0.09	] : 0.07	4 : 0.05	3 : 0.03	b : 0.03	2 : 0.01	h : 0.01	
] : 0.17	c : 0.13	e : 0.13	i : 0.09	g : 0.07	= : 0.07	d : 0.05	4 : 0.05	a : 0.03	3 : 0.03	b : 0.03	: : 0.01	8 : 0.01	h : 0.01	o : 0.01	
e : 0.11	] : 0.11	c : 0.11	b : 0.11	= : 0.07	i : 0.07	d : 0.05	2 : 0.05	> : 0.03	h : 0.03	: : 0.03	3 : 0.03	g : 0.03	a : 0.01	8 : 0.01	4 : 0.01	o : 0.01	

#score	764.9589073678736
#seq	52
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_transcript_m1_run2.txt

#BEAR
ffffff"""bb[cccooooooccc]bb4444ffff	chr19:37500402-37500650(+)$1	248	79	114	14.2643
ddd[bb[ccc!!cccnnnnnccc22ccc]bbdddd	chr17:41466041-41466361(-)$1	320	198	233	10.7670
$$$a[a!!a!!ddddoooooodddd22a22a]a44	chr19:5080926-5081243(+)$1	317	69	104	14.7701
ccc[ccc[bb[ddddooooooddddbb]cccccc:	chr16:89017966-89018230(-)$1	264	170	205	13.0150
cc####ccc[bb[cccnnnnnccc22bb]ccc333	chr18:70916357-70916651(-)$1	294	25	60	12.6779
bb[ggggggg[bb[aooooooabbggggggg22bb	chr16:89467340-89467588(-)$1	248	4	39	12.9261
cc####eeeee[cccooooooccceeeee22cccF	chr20:25843563-25843811(-)$1	248	101	136	14.2988
dd[ccc[hhhhhhhhoooooohhhhhhhh]ccc22	chr2:97576003-97576255(-)$1	252	170	205	11.8605
cc[ccc[ccc!!cccooooooccc22ccccccccc	chr14:105714222-105714487(-)$1	265	81	116	17.6625
bbffffff[bb[cccoooooocccbbffffff]bb	chr22:20049931-20050179(+)$1	248	199	234	13.0583
c"""bb[ccc[ddddoooooodddd]ccc]bbccc	chr20:62550498-62550758(+)$1	260	175	210	14.6435
bb[ccc[eeeee[ccclllccc333eeeeecccbb	chr7:1152297-1152566(-)$1	269	151	186	10.4621
bb[ccc[ddddddddoooooodddd]dddd]ccc]	chr1:245026814-245027072(-)$1	258	147	182	14.1672
iiiiiiiiidddd[cccmmmmccc333dddd333i	chr16:89034874-89035110(-)$1	236	145	180	11.8065
"iiiiiiiiia[cccnnnnnccc333a]iiiiiii	chr22:49949329-49949606(-)$1	277	201	236	13.1853
ee[ccc!!ffffffooooooffffffccc]eeeee	chr22:48228915-48229172(+)$1	257	137	172	10.9536
ee"""ccc####ddddmmmmdddd4444ccceeee	chr8:94752265-94752496(-)$1	231	151	186	10.7173
c[dddd[bb"""cccoooooocccbb]ddddccc:	chr17:41463609-41463842(-)$1	233	119	154	14.4180
:ggggggg####cccooooooccc333ggggggg:	chr16:31198484-31198728(+)$1	244	140	175	16.1488
eggggggg####cccooooooccc]ggggggg]ee	chr21:9914078-9914345(-)$1	267	77	112	16.4128
gggggg[ffffff!!aooooooa22ffffffgggg	chr17:17069721-17070026(+)$1	305	89	124	12.5775
eeeccc[dddd[ddddoooooodddd]dddd]ccc	chr2:236544899-236545140(+)$1	241	26	61	12.7915
dd!!a[dddd[ddddoooooodddd]dddd]a]dd	chr17:80113407-80113665(-)$1	258	103	138	13.8249
bb[ccc[bbgggggggooooooggggggg]bbccc	chr19:5081470-5081703(+)$1	233	190	225	12.6058
ddd:ffffff!!cccooooooccc22ffffff:GG	chr16:89027037-89027264(-)$1	227	19	54	12.2641
b[cccdddd"""cccooooooccc22dddd55555	chr12:6709369-6709613(-)$1	244	170	205	12.7344
%%dddd[bb!!ddddoooooodddd22bb]dddd3	chr22:49945890-49946131(-)$1	241	156	191	12.3812
gg[bb!!bb!!ddddoooooodddd22bbbbgggg	chr22:21007080-21007327(-)$1	247	5	40	13.7931
gg!!bb[eeeee[cccnnnnnccc]eeeee333bb	chr16:1367239-1367548(+)$1	309	65	100	11.7227
d"""ccc####ccclllccc]ccc22dddd22a]c	chr16:89030874-89031108(-)$1	234	103	138	10.8030
JJ:iiiiiiiiicccooooooccc22iiiiiiiii	chr1:2204800-2205059(+)$1	259	94	129	12.7668
gggeeeee[bb[cccooooooccc]bbeeeee]gg	chr21:9922145-9922409(-)$1	264	114	149	14.5370
[dddd[ccc[a"""cccmmmmccca]ccc]dddd2	chr2:236544293-236544548(+)$1	255	106	141	10.1814
gggeeeee[bb[cccooooooccc]bbeeeee]gg	chr21:9922209-9922445(-)$1	236	150	185	14.5370
==[a"""dddd!!cccmmmmcccdddd333a]===	chr16:89039395-89039623(-)$1	228	96	131	10.9460
b####ffffffddddoooooodddd]ffffff444	chr7:1158874-1159147(-)$1	273	41	76	13.3443
gggg[ccc"""ddddoooooodddd22ccc]gggg	chr17:8451861-8452163(-)$1	302	168	203	15.2866
d!!ggggggga[cccooooooccc]a]gggggggd	chr16:89179479-89179726(+)$1	247	135	170	16.4649
[dddd&&&&&&&cccooooooccc4444dddd]cc	chr19:49376915-49377175(+)$1	260	114	149	12.0434
fcccbb[dddd!!cccnnnnnccc22dddd]bbdd	chr22:20836649-20836924(-)$1	275	122	157	11.3567
ggggggccc!!a[bboooooobb]a]ccc22gggg	chr5:109035342-109035588(-)$1	246	63	98	14.0560
cc[bb####bb[cccooooooccc]bb333bb]cc	chr4:1229196-1229413(-)$1	217	47	82	15.3660
ggggeeeee"""cccooooooccc22eeeee8888	chr19:2270320-2270598(+)$1	278	202	237	14.7611
###ggggggg"""bboooooobb4444ggggggg2	chr7:2008185-2008461(-)$1	276	103	138	15.0191
ffffff####bb[bboooooobb]bbffffffccc	chr16:89025231-89025495(-)$1	264	82	117	11.6673
$cccbb[ggggggg[ccclllccc333ggggggg2	chr8:145524659-145524955(+)$1	296	221	256	11.6423
ddddcccbb[eeeeeooooooeeeee333bb]ccc	chr18:75691128-75691362(-)$1	234	65	100	12.0808
bccc[cccddddcccooooooccc333dddd22cc	chr7:2007488-2007747(-)$1	259	179	214	15.8999
ee[ccc!!a!!eeeeeooooooeeeee]a22ccc2	chr8:144677650-144677911(-)$1	261	123	158	12.6821
eeeebb[eeeeecccooooooccc22eeeee]bb:	chr1:246140450-246140758(-)$1	308	55	90	13.6778
$$$$dddd####cccooooooccc4444dddd333	chr1:16257660-16257917(+)$1	257	150	185	16.3671
dd!!dddd[bb!!cccnnnnnccc22bb]dddd]d	chr8:145522574-145522829(+)$1	255	199	234	11.5066
cc!!iiiiiiiiirrrrrrrrriiiiiiiii22cc	chr16:89029752-89030007(-)$1	255	1	36	10.6189
ee[===========[aooooooa]===========	chr13:114186745-114187027(+)$1	282	168	203	14.6750
gggggggdddd[a!!aooooooa22a]dddd22gg	chr16:89018820-89019057(-)$1	237	142	177	13.5241
+++dddd$$$$$cccooooooccc333dddd>>>>	chr11:62292083-62292350(-)$1	267	121	156	13.4998

#otherMatches

#Seq PSSM
uccuggaaagcgguggcggcacacagcagccccag	chr19:37500402-37500650(+)$1	248	79	114	14.2643
GGCUGGGGAGAAUCCUUGCUGGGCCCUCGCCGUCC	chr17:41466041-41466361(-)$1	320	198	233	10.7670
ggagggaacgaggucuguggugacugagagcgcgu	chr19:5080926-5081243(+)$1	317	69	104	14.7701
GCUAGCCCUGUGCCCACCCUGGGGCCGUGGCAGCA	chr16:89017966-89018230(-)$1	264	170	205	13.0150
gcccucucugacaccaacccaugggagugagacau	chr18:70916357-70916651(-)$1	294	25	60	12.6779
gguugcaaugagucgagaucacaccauugcacucc	chr16:89467340-89467588(-)$1	248	4	39	12.9261
acgguguugguuggggugagucucgccaaaagucg	chr20:25843563-25843811(-)$1	248	101	136	14.2988
AGAGGAGGCCGUCUCCCCGGUGGGACGGCGUCUCA	chr2:97576003-97576255(-)$1	252	170	205	11.8605
ucgcgcgcugaaggucacacagccggcgggugggc	chr14:105714222-105714487(-)$1	265	81	116	17.6625
UGGGGCAGGCCGAGGACCGGCCCUGGCUGCCCUCA	chr22:20049931-20050179(+)$1	248	199	234	13.0583
cguaacuguugagcaaaugaauGCUGAGCUGUGAU	chr20:62550498-62550758(+)$1	260	175	210	14.6435
gcacagcugaggccggaccccgcacccucacuggc	chr7:1152297-1152566(-)$1	269	151	186	10.4621
GCGGCGGGUGAGUGCUGCGUUGUACGUUGCGCGCG	chr1:245026814-245027072(-)$1	258	147	182	14.1672
AGCAGGUGACAGAAGAUGCCAGUCAGAUCUGCCCU	chr16:89034874-89035110(-)$1	236	145	180	11.8065
uuugcuuccacauggaaggaccacaggcugggagc	chr22:49949329-49949606(-)$1	277	201	236	13.1853
uggggucaggccuggauucaugggcuacuauagcu	chr22:48228915-48229172(+)$1	257	137	172	10.9536
UUUCUGCAGGGGAAACUCACGUUUAGAGUGUGAAU	chr8:94752265-94752496(-)$1	231	151	186	10.7173
guaucuauaaauugcaucccagcauaaagaucaga	chr17:41463609-41463842(-)$1	233	119	154	14.4180
ACAUUUAUAAAGUACGGAAUGGUGUCAAUGAAUGC	chr16:31198484-31198728(+)$1	244	140	175	16.1488
CAGAGGCCUUCUCCUUGGCUUAGGUGGUCUCUCGG	chr21:9914078-9914345(-)$1	267	77	112	16.4128
UUGGGGACACUGGGAGGAGAGGCAGUCGGUGCCUC	chr17:17069721-17070026(+)$1	305	89	124	12.5775
GACUUUAUCUGGCUGUGUGCAGACAGACAGGAAAG	chr2:236544899-236545140(+)$1	241	26	61	12.7915
CCUCAGGUAGAGGAUCAAUGUGUCCGUUAUGUUGG	chr17:80113407-80113665(-)$1	258	103	138	13.8249
CCAGGGUGCUGAUCUGUGGUGUCAGGUCAUGCCCC	chr19:5081470-5081703(+)$1	233	190	225	12.6058
UCCCuguagccaauaggauuaugucagcugcaaau	chr16:89027037-89027264(-)$1	227	19	54	12.2641
GGUCUGCCUGGAUCCCGACAUGGAGAAGGCUCCCG	chr12:6709369-6709613(-)$1	244	170	205	12.7344
AGUCUGGCCAUGCUCCUCAGUGAGCUCGGGCGGAA	chr22:49945890-49946131(-)$1	241	156	191	12.3812
UCAUGAAGGAUGUUAUGUGUUUGGCCACCCAGAUG	chr22:21007080-21007327(-)$1	247	5	40	13.7931
uaaaagauugguucaggaccucuguaccgaaaacu	chr16:1367239-1367548(+)$1	309	65	100	11.7227
gggagccagucgggcagcccaggugauucagaggg	chr16:89030874-89031108(-)$1	234	103	138	10.8030
GCAGGACGGGGUGGCUGCCAUGCCUCAUUCUGUCU	chr1:2204800-2205059(+)$1	259	94	129	12.7668
CCUGGAGGCAGCAGCCUGGGAGCUCCUCCUCCGAG	chr21:9922145-9922409(-)$1	264	114	149	14.5370
GGCUUUGGAGGUUUACUGAUAGGUCGUUCUGAGUA	chr2:236544293-236544548(+)$1	255	106	141	10.1814
CCUGGAGGCAGCAGCCUGGGAGCUCCUCCUCCGAG	chr21:9922209-9922445(-)$1	236	150	185	14.5370
GUGGACAUGAGCAGCCGGGCGGUCUCAGCCCGACU	chr16:89039395-89039623(-)$1	228	96	131	10.9460
cacuuucuugauguccuuugaggcgcuuaagauuu	chr7:1158874-1159147(-)$1	273	41	76	13.3443
CACAUAAUGGGCUUCUCCCAUGAAGAGAUUCUGUG	chr17:8451861-8452163(-)$1	302	168	203	15.2866
GCAGGAACUGAAGGCUCCACUGCCAUCCAGUUUCC	chr16:89179479-89179726(+)$1	247	135	170	16.4649
ACCAUCACACCGGGAGUGUUGUCCAGCCGUGGAGG	chr19:49376915-49377175(+)$1	260	114	149	12.0434
gaggccgaggugggaggaucacuuaaaccugggga	chr22:20836649-20836924(-)$1	275	122	157	11.3567
gcgaucuggcugcgaaaucugucaccccauugauc	chr5:109035342-109035588(-)$1	246	63	98	14.0560
CUGAGAAAACGGCGAAGCUGAUCGGUGGAACUGAG	chr4:1229196-1229413(-)$1	217	47	82	15.3660
GGGUGGCGCACUCCGACAGCCCGGCAGCGCCCUGG	chr19:2270320-2270598(+)$1	278	202	237	14.7611
uuuggaaggaagaucacagacgacaaguccuuucu	chr7:2008185-2008461(-)$1	276	103	138	15.0191
CUUGUCUAUUAGGUGAAUGAGCAGCUGACAGGGUU	chr16:89025231-89025495(-)$1	264	82	117	11.6673
cgcuugagcccaggaguucaagaccagccugggca	chr8:145524659-145524955(+)$1	296	221	256	11.6423
GAGGCCCCGUGGGUGCAGCACCAUCUUCUCGAGGG	chr18:75691128-75691362(-)$1	234	65	100	12.0808
CCAGCAGUGUGGACUGGAGGGAGUUUCCCGCGUGC	chr7:2007488-2007747(-)$1	259	179	214	15.8999
AUGCAGGACAGGCUGGCGUUUCCCAGUGGGGCUGG	chr8:144677650-144677911(-)$1	261	123	158	12.6821
uggccCCUCCUUUCGGUUUUGUGAUUAAGGAUGGA	chr1:246140450-246140758(-)$1	308	55	90	13.6778
CCCUGUGGAACAGCUGGAACAAGUAGACCUGCCCC	chr1:16257660-16257917(+)$1	257	150	185	16.3671
GCAAGGCAAGCCCUGGAAACACCACUGCCUGCUAG	chr8:145522574-145522829(+)$1	255	199	234	11.5066
auaacaaauccacagagacagaguggauuuggggu	chr16:89029752-89030007(-)$1	255	1	36	10.6189
CGGUGCUGGGCCCAGGGCCAGACGUGGGCCUGGCA	chr13:114186745-114187027(+)$1	282	168	203	14.6750
GCCGUCUCGGUGCCCCGUGGGAGAAGGACUGGAGG	chr16:89018820-89019057(-)$1	237	142	177	13.5241
AAUGCCUGAUUUGGACCUCAAUCUUAAAGGCCCUA	chr11:62292083-62292350(-)$1	267	121	156	13.4998

#DB
((((((...((.(((......))).))....))))	chr19:37500402-37500650(+)$1	1	79	114	14.2643
(((.((.(((..(((.....)))..))).))))))	chr17:41466041-41466361(-)$1	1	198	233	10.7670
...(.(..(..((((......))))..)..).)..	chr19:5080926-5081243(+)$1	1	69	104	14.7701
(((.(((.((.((((......)))))).)))))).	chr16:89017966-89018230(-)$1	1	170	205	13.0150
((....(((.((.(((.....)))..)).)))...	chr18:70916357-70916651(-)$1	1	25	60	12.6779
((.(((((((.((.(......))))))))))..))	chr16:89467340-89467588(-)$1	1	4	39	12.9261
((....(((((.(((......))))))))..))))	chr20:25843563-25843811(-)$1	1	101	136	14.2988
((.(((.((((((((......)))))))).)))..	chr2:97576003-97576255(-)$1	1	170	205	11.8605
((.(((.(((..(((......)))..)))))))))	chr14:105714222-105714487(-)$1	1	81	116	17.6625
((((((((.((.(((......))))))))))).))	chr22:20049931-20050179(+)$1	1	199	234	13.0583
(...((.(((.((((......)))).))).)))))	chr20:62550498-62550758(+)$1	1	175	210	14.6435
((.(((.(((((.(((...)))...))))))))))	chr7:1152297-1152566(-)$1	1	151	186	10.4621
((.(((.((((((((......)))).)))).))).	chr1:245026814-245027072(-)$1	1	147	182	14.1672
(((((((((((((.(((....)))...))))...)	chr16:89034874-89035110(-)$1	1	145	180	11.8065
.((((((((((.(((.....)))...).)))))))	chr22:49949329-49949606(-)$1	1	201	236	13.1853
((.(((..((((((......))))))))).)))))	chr22:48228915-48229172(+)$1	1	137	172	10.9536
((...(((....((((....))))....)))))))	chr8:94752265-94752496(-)$1	1	151	186	10.7173
(.((((.((...(((......))))).))))))).	chr17:41463609-41463842(-)$1	1	119	154	14.4180
.(((((((....(((......)))...))))))).	chr16:31198484-31198728(+)$1	1	140	175	16.1488
((((((((....(((......))).))))))).))	chr21:9914078-9914345(-)$1	1	77	112	16.4128
((((((.((((((..(......)..))))))))))	chr17:17069721-17070026(+)$1	1	89	124	12.5775
((((((.((((.((((......)))).)))).)))	chr2:236544899-236545140(+)$1	1	26	61	12.7915
((..(.((((.((((......)))).)))).).))	chr17:80113407-80113665(-)$1	1	103	138	13.8249
((.(((.(((((((((......))))))).)))))	chr19:5081470-5081703(+)$1	1	190	225	12.6058
))).((((((..(((......)))..)))))).))	chr16:89027037-89027264(-)$1	1	19	54	12.2641
(.(((((((...(((......)))..)))).....	chr12:6709369-6709613(-)$1	1	170	205	12.7344
..((((.((..((((......))))..)).)))).	chr22:49945890-49946131(-)$1	1	156	191	12.3812
((.((..((..((((......))))..))))))))	chr22:21007080-21007327(-)$1	1	5	40	13.7931
((..((.(((((.(((.....))).)))))...))	chr16:1367239-1367548(+)$1	1	65	100	11.7227
(...(((....(((...))).)))..))))..).)	chr16:89030874-89031108(-)$1	1	103	138	10.8030
((.((((((((((((......)))..)))))))))	chr1:2204800-2205059(+)$1	1	94	129	12.7668
((((((((.((.(((......))).))))))).))	chr21:9922145-9922409(-)$1	1	114	149	14.5370
.((((.(((.(...(((....)))).))).)))).	chr2:236544293-236544548(+)$1	1	106	141	10.1814
((((((((.((.(((......))).))))))).))	chr21:9922209-9922445(-)$1	1	150	185	14.5370
((.(...((((..(((....)))))))...).)))	chr16:89039395-89039623(-)$1	1	96	131	10.9460
(....((((((((((......)))).))))))...	chr7:1158874-1159147(-)$1	1	41	76	13.3443
((((.(((...((((......))))..))).))))	chr17:8451861-8452163(-)$1	1	168	203	15.2866
(..((((((((.(((......))).).))))))))	chr16:89179479-89179726(+)$1	1	135	170	16.4649
.((((.......(((......)))....)))).))	chr19:49376915-49377175(+)$1	1	114	149	12.0434
))))((.((((..(((.....)))..)))).))((	chr22:20836649-20836924(-)$1	1	122	157	11.3567
(((((((((..(.((......)).).)))..))))	chr5:109035342-109035588(-)$1	1	63	98	14.0560
((.((....((.(((......))).))...)).))	chr4:1229196-1229413(-)$1	1	47	82	15.3660
(((((((((...(((......)))..)))))....	chr19:2270320-2270598(+)$1	1	202	237	14.7611
...(((((((...((......))....))))))).	chr7:2008185-2008461(-)$1	1	103	138	15.0191
((((((....((.((......)).)))))))))))	chr16:89025231-89025495(-)$1	1	82	117	11.6673
.(((((.(((((((.(((...)))...))))))).	chr8:145524659-145524955(+)$1	1	221	256	11.6423
(((((((((.(((((......)))))...)).)))	chr18:75691128-75691362(-)$1	1	65	100	12.0808
((((.((((((((((......)))...))))..))	chr7:2007488-2007747(-)$1	1	179	214	15.8999
((.(((..(..(((((......))))).)..))).	chr8:144677650-144677911(-)$1	1	123	158	12.6821
))))((.((((((((......)))..))))).)).	chr1:246140450-246140758(-)$1	1	55	90	13.6778
....((((....(((......)))....))))...	chr1:16257660-16257917(+)$1	1	150	185	16.3671
((..((((.((..(((.....)))..)).)))).)	chr8:145522574-145522829(+)$1	1	199	234	11.5066
((..(((((((((.........)))))))))..))	chr16:89029752-89030007(-)$1	1	1	36	10.6189
((.(((((((((((.(......).)))))))))))	chr13:114186745-114187027(+)$1	1	168	203	14.6750
(((((((((((.(..(......)..).))))..))	chr16:89018820-89019057(-)$1	1	142	177	13.5241
...((((.....(((......)))...))))....	chr11:62292083-62292350(-)$1	1	121	156	13.4998

#PSSM
g : 0.16	d : 0.14	c : 0.14	b : 0.14	e : 0.12	f : 0.05	$ : 0.05	[ : 0.03	i : 0.01	" : 0.01	: : 0.01	% : 0.01	J : 0.01	= : 0.01	# : 0.01	+ : 0.01	
g : 0.19	c : 0.16	d : 0.14	e : 0.10	b : 0.08	f : 0.03	$ : 0.03	" : 0.03	i : 0.03	[ : 0.03	# : 0.03	% : 0.01	J : 0.01	= : 0.01	! : 0.01	+ : 0.01	
[ : 0.21	g : 0.16	d : 0.12	c : 0.08	! : 0.08	# : 0.07	f : 0.05	" : 0.05	$ : 0.03	i : 0.03	e : 0.03	: : 0.01	+ : 0.01	
c : 0.21	g : 0.17	d : 0.10	! : 0.07	f : 0.05	# : 0.05	" : 0.05	i : 0.05	e : 0.05	[ : 0.03	a : 0.03	b : 0.03	: : 0.01	$ : 0.01	= : 0.01	
c : 0.21	b : 0.14	g : 0.14	d : 0.12	f : 0.07	i : 0.07	[ : 0.05	# : 0.05	e : 0.05	" : 0.03	a : 0.01	= : 0.01	
c : 0.24	g : 0.14	b : 0.10	d : 0.10	f : 0.08	i : 0.07	# : 0.05	e : 0.05	[ : 0.03	a : 0.01	! : 0.01	" : 0.01	& : 0.01	= : 0.01	
[ : 0.26	c : 0.16	g : 0.10	d : 0.08	! : 0.07	e : 0.07	i : 0.07	f : 0.05	" : 0.03	# : 0.03	& : 0.01	= : 0.01	
c : 0.16	d : 0.16	e : 0.12	g : 0.10	b : 0.08	f : 0.07	i : 0.07	! : 0.05	# : 0.05	" : 0.01	[ : 0.01	h : 0.01	& : 0.01	= : 0.01	$ : 0.01	
d : 0.14	# : 0.12	c : 0.10	b : 0.10	e : 0.08	g : 0.07	[ : 0.07	i : 0.07	f : 0.07	" : 0.03	a : 0.03	h : 0.01	& : 0.01	= : 0.01	$ : 0.01	
d : 0.14	b : 0.12	# : 0.10	! : 0.08	g : 0.08	e : 0.07	f : 0.07	" : 0.07	c : 0.05	[ : 0.05	i : 0.05	h : 0.01	& : 0.01	= : 0.01	$ : 0.01	
b : 0.14	! : 0.14	d : 0.12	e : 0.08	# : 0.08	" : 0.08	[ : 0.07	a : 0.05	f : 0.05	g : 0.03	i : 0.03	h : 0.01	& : 0.01	= : 0.01	$ : 0.01	
d : 0.19	[ : 0.17	! : 0.10	e : 0.08	" : 0.08	# : 0.07	b : 0.05	f : 0.03	g : 0.03	i : 0.03	h : 0.01	c : 0.01	& : 0.01	a : 0.01	= : 0.01	$ : 0.01	
c : 0.41	d : 0.21	[ : 0.08	! : 0.05	f : 0.03	g : 0.03	" : 0.03	e : 0.03	b : 0.01	h : 0.01	i : 0.01	= : 0.01	a : 0.01	
c : 0.51	d : 0.19	b : 0.05	[ : 0.03	! : 0.03	g : 0.03	e : 0.03	h : 0.01	f : 0.01	" : 0.01	r : 0.01	= : 0.01	
c : 0.53	d : 0.19	b : 0.05	! : 0.03	[ : 0.03	e : 0.03	a : 0.01	h : 0.01	o : 0.01	g : 0.01	l : 0.01	r : 0.01	
o : 0.64	c : 0.16	a : 0.05	n : 0.03	d : 0.03	g : 0.01	l : 0.01	e : 0.01	r : 0.01	
o : 0.75	n : 0.10	c : 0.05	l : 0.03	m : 0.03	r : 0.01	
o : 0.75	n : 0.10	m : 0.07	c : 0.03	l : 0.01	r : 0.01	
o : 0.75	n : 0.10	m : 0.07	l : 0.03	c : 0.01	r : 0.01	
o : 0.75	n : 0.10	m : 0.07	c : 0.03	l : 0.01	r : 0.01	
o : 0.73	c : 0.07	n : 0.07	m : 0.03	f : 0.01	d : 0.01	] : 0.01	l : 0.01	r : 0.01	
c : 0.57	d : 0.17	o : 0.10	b : 0.05	a : 0.01	h : 0.01	f : 0.01	e : 0.01	r : 0.01	
c : 0.55	d : 0.19	b : 0.07	a : 0.05	e : 0.03	h : 0.01	3 : 0.01	f : 0.01	g : 0.01	i : 0.01	
c : 0.49	d : 0.21	2 : 0.05	] : 0.05	3 : 0.03	e : 0.03	b : 0.01	h : 0.01	f : 0.01	g : 0.01	4 : 0.01	i : 0.01	
2 : 0.23	d : 0.19	] : 0.12	3 : 0.12	4 : 0.07	e : 0.05	b : 0.05	g : 0.03	a : 0.03	h : 0.01	f : 0.01	i : 0.01	= : 0.01	
2 : 0.24	b : 0.14	] : 0.10	3 : 0.10	e : 0.08	4 : 0.07	g : 0.05	f : 0.03	d : 0.03	a : 0.03	c : 0.01	h : 0.01	i : 0.01	= : 0.01	
b : 0.12	c : 0.10	e : 0.10	d : 0.10	3 : 0.10	f : 0.08	2 : 0.07	4 : 0.07	] : 0.07	g : 0.05	i : 0.03	h : 0.01	a : 0.01	= : 0.01	
d : 0.19	c : 0.12	g : 0.12	e : 0.12	f : 0.08	4 : 0.07	b : 0.07	] : 0.05	3 : 0.05	i : 0.03	a : 0.01	h : 0.01	= : 0.01	
d : 0.23	c : 0.14	g : 0.12	e : 0.12	f : 0.08	] : 0.05	i : 0.05	3 : 0.05	b : 0.03	4 : 0.01	2 : 0.01	h : 0.01	a : 0.01	= : 0.01	
d : 0.24	g : 0.10	] : 0.10	e : 0.10	c : 0.08	f : 0.08	2 : 0.07	b : 0.05	i : 0.05	3 : 0.03	4 : 0.01	= : 0.01	
d : 0.19	b : 0.10	c : 0.10	g : 0.10	f : 0.08	e : 0.08	2 : 0.07	] : 0.07	i : 0.05	a : 0.03	4 : 0.01	5 : 0.01	3 : 0.01	= : 0.01	
c : 0.16	g : 0.16	d : 0.10	f : 0.08	] : 0.08	2 : 0.08	b : 0.07	e : 0.07	3 : 0.03	i : 0.03	a : 0.01	5 : 0.01	8 : 0.01	= : 0.01	> : 0.01	
c : 0.23	g : 0.14	] : 0.12	d : 0.07	3 : 0.07	2 : 0.07	a : 0.03	i : 0.03	e : 0.03	= : 0.03	b : 0.03	f : 0.01	: : 0.01	5 : 0.01	4 : 0.01	8 : 0.01	> : 0.01	
c : 0.26	g : 0.19	d : 0.08	b : 0.08	3 : 0.05	e : 0.05	4 : 0.03	i : 0.03	] : 0.03	= : 0.03	f : 0.01	2 : 0.01	G : 0.01	5 : 0.01	8 : 0.01	> : 0.01	
c : 0.19	g : 0.12	d : 0.08	2 : 0.08	: : 0.07	b : 0.07	3 : 0.05	i : 0.05	e : 0.05	4 : 0.03	= : 0.03	f : 0.01	F : 0.01	] : 0.01	G : 0.01	5 : 0.01	8 : 0.01	> : 0.01	

#score	742.2241002081321
#seq	56
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_transcript_m3_run2.txt

#BEAR
ff[ccc"""bb[bbmmmmbb22bb333cccff	chr1:38174119-38174377(+)$1	258	58	90	10.6667
:ggggggg!!ddddmmmmdddd666666gggg	chr3:48786825-48787085(-)$1	260	224	256	12.1771
[ccc!!dddd[cccmmmmccc]dddd22ccc]	chr2:219139383-219139656(-)$1	273	202	234	11.3111
e!!eeeee!!ddddmmmmddddeeeeeeeeee	chr21:47609112-47609365(-)$1	253	52	84	13.7352
ccdddd!!eeeeeammmma]eeeee22dddd]	chr17:38247859-38248088(+)$1	229	32	64	11.2963
[a[eeeee!!ddddmmmmdddd]eeeeeabbi	chr8:144807030-144807312(-)$1	282	210	242	13.5787
ddd[bb[bb[ddddmmmmdddd]bb22bb]dd	chr8:1780073-1780413(+)$1	340	102	134	12.6102
ccc!!eeeee[ddddllldddd]eeeee]ccc	chr7:65619181-65619415(+)$1	234	168	200	10.5012
ggggggg"""ddddmmmmdddd333ggggggg	chr9:137023885-137024191(+)$1	306	64	96	16.2073
dccc!!ddddddddmmmmdddd]dddd22ccc	chr1:151091616-151091874(+)$1	258	48	80	12.8753
f$$$$$eeeee[bbmmmmbbeeeee333ffff	chr9:131152756-131153008(+)$1	252	74	106	9.8938
####ccc[eeeeemmmmeeeee]ccc333eee	chr17:40673161-40673535(+)$1	374	234	266	11.6383
eee[ccc[a[ddddmmmmddddaccc]eeeee	chr11:61633203-61633498(+)$1	295	43	75	14.8179
iiiiiiii[a[ccclllccc]a]iiiiiiiii	chr17:40554532-40554779(-)$1	247	181	213	10.7396
dd!!ccc"""ddddmmmmdddd333ccc22dd	chr3:48556175-48556490(-)$1	315	81	113	15.7168
eee!!iiiiiiiiimmmmiiiiiiiii]eeee	chr2:219139456-219139705(-)$1	249	34	66	12.0544
::bb$$$$$eeeeemmmmeeeee4444bbccc	chr11:64895158-64895417(-)$1	259	79	111	10.3274
[accc####eeeeemmmmeeeeeccc]a]eee	chr1:11849358-11849599(-)$1	241	144	176	14.0433
###ccc"""eeeeemmmmeeeeeccc4444cc	chr17:35875442-35875732(-)$1	290	199	231	14.0321
ee[ccc"""eeeeemmmmeeeeeccc]eeeee	chr17:76108386-76108759(-)$1	373	201	233	13.8772
eeeccc[cccddddmmmmdddd]ccc]ccc:e	chr2:131808751-131809018(-)$1	267	199	231	13.6485
gggggg####ddddmmmmdddd22gggggggd	chr9:136228792-136229032(-)$1	240	8	40	15.5472
ffff[a[gggggggmmmmggggggg]a]ffff	chr20:62589029-62589270(-)$1	241	125	157	10.9690
========"""ccclllccc============	chr16:2648146-2648419(+)$1	273	173	205	11.9861
gggg!!bb!!ddddmmmmdddd22bb22gggg	chr22:24970543-24970787(+)$1	244	97	129	14.6933
edddd$$$$$ddddmmmmdddd4444dddd33	chr19:39358889-39359175(-)$1	286	219	251	14.3188
iiiiiiii!!ddddmmmmdddd22iiiiiiii	chr20:30252694-30252946(-)$1	252	27	59	15.5199
!!ccc"""ffffffmmmmffffff]ccc22cc	chr9:140175374-140175666(+)$1	292	217	249	10.6056
cbb!!bbcccddddmmmmdddd]ccc22bb22	chr9:115446511-115446765(-)$1	254	138	170	12.6914
!!ccc$$$$$ddddmmmmddddccc333ffff	chr19:29105935-29106172(+)$1	237	141	173	15.3621
=====[bb"""cccmmmmccc333bb]=====	chr8:143817998-143818311(+)$1	313	92	124	13.6244
[eeeee####ddddmmmmdddd4444eeeee]	chr22:41996048-41996284(-)$1	236	149	181	15.6304
eee[==========mmmm==========]eee	chr19:5152093-5152430(+)$1	337	276	308	12.9185
dccc[dddd[ddddmmmmdddd]dddd]ccc2	chrX:109417143-109417413(+)$1	270	151	183	13.1638
[bb[eeeee!!cccmmmmccceeeee]bbddd	chr19:6279723-6280023(-)$1	300	40	72	10.8401
!!ffffff!!ddddmmmmdddd4444ffffff	chr22:39826530-39826798(+)$1	268	182	214	14.4878
c!!ccc"""eeeeellleeeeeccc22ccc44	chr11:869219-869464(-)$1	245	41	73	11.6458
dggggggg!!ddddlllddddggggggg333d	chr17:79801080-79801370(-)$1	290	241	273	12.0856
dd[ccc####ddddmmmmdddd333cccdddd	chr19:39982424-39982753(+)$1	329	251	283	15.9943
eee[eeeee[ddddoooooodddd333eeeee	chr19:11242774-11243062(+)$1	288	113	145	10.8666
e[ccc!!gggggggmmmmggggggg22cccee	chr21:45176997-45177245(+)$1	248	147	179	12.3086
ddd"""ccc[ddddmmmmdddd]ccc22dddd	chr19:39876043-39876311(+)$1	268	179	211	14.3812
ffffffbb!!ddddmmmmdddd22bb:ccc""	chr10:102121839-102122093(+)$1	254	142	174	11.9649
eeeee[a!!eeeeemmmmeeeee22a]eeeee	chr19:811237-811521(+)$1	284	43	75	12.8611
#ccc[ccc!!ddddmmmmdddd]cccccc444	chr10:75008696-75008913(-)$1	217	117	149	15.2595
========!!ddddmmmmdddd]=========	chr17:74078943-74079194(-)$1	251	4	36	16.4945
"dddd####eeeeemmmmeeeee4444dddd]	chr11:66044690-66044941(+)$1	251	88	120	13.4997
[=============mmmm=============a	chr19:47724560-47724809(-)$1	249	109	141	13.3994
gggggg####ddddmmmmdddd55555ggggg	chr17:79890698-79890962(-)$1	264	9	41	12.9394
d!!ffffff[ddddmmmmdddd]ffffff22d	chr5:154194106-154194330(+)$1	224	164	196	12.6687
b!!dddd[ccccccmmmmccc333cccdddd]	chr1:33237159-33237407(+)$1	248	12	44	11.7493
bb[ccc!!a[acccmmmmccc]aa22ccc22b	chr20:3846960-3847263(+)$1	303	24	56	11.8174

#otherMatches

#Seq PSSM
CGUGCUAGUCCCACACCAGUUAGGUAGAGCUG	chr1:38174119-38174377(+)$1	258	58	90	10.6667
GUUGGGGUAUUUGGGAUUCUAAUUGUUAACCC	chr3:48786825-48787085(-)$1	260	224	256	12.1771
UGAAAGCUGCUGGGGCCUCCUUGCAGGCUUCU	chr2:219139383-219139656(-)$1	273	202	234	11.3111
UUGGGACCCUUGACAUCUGUCAGGUUUGCACA	chr21:47609112-47609365(-)$1	253	52	84	13.7352
AGGCCUUGAAGAGCCUUAGCCUCUUAUAGGCA	chr17:38247859-38248088(+)$1	229	32	64	11.2963
ACACAGGGAAGCCCGAAGGGGCGCCUUGGCCA	chr8:144807030-144807312(-)$1	282	210	242	13.5787
CUGGGUGUGGGGACAGGAGUCUGUGGAAUGCG	chr8:1780073-1780413(+)$1	340	102	134	12.6102
gacaggguuuugccauauuggccaggcuaguc	chr7:65619181-65619415(+)$1	234	168	200	10.5012
UCUCUAGGUUCAUUGUUCAGUGUUGCUGGGGG	chr9:137023885-137024191(+)$1	306	64	96	16.2073
uuccagcuacucaggaggcugaggugggagga	chr1:151091616-151091874(+)$1	258	48	80	12.8753
AUACUUGAUGGCGCGAAUGUCCGUUUUCUCUC	chr9:131152756-131153008(+)$1	252	74	106	9.8938
AGCCCUUCCCACCUCCUGGUGGUGAGCCAGUC	chr17:40673161-40673535(+)$1	374	234	266	11.6383
CCGAGAGGCUGGUGUAUGCACUGCUCACGGAC	chr11:61633203-61633498(+)$1	295	43	75	14.8179
GGUCCCUUGGUGCUGAUGGCCUGAAGGGGCCU	chr17:40554532-40554779(-)$1	247	181	213	10.7396
CUGCUCUCACAGUGAAACCACUUCAAGACAGG	chr3:48556175-48556490(-)$1	315	81	113	15.7168
UAGAAGAGAUCUGUGCCCAUGGGUCUCCUUGC	chr2:219139456-219139705(-)$1	249	34	66	12.0544
GUGCCCCCUAUGCCCUGUGGCAUUUCUGCGUC	chr11:64895158-64895417(-)$1	259	79	111	10.3274
CGGUGCUCUGGCGGCUUCCUGUCCACUCUCGG	chr1:11849358-11849599(-)$1	241	144	176	14.0433
CUUUGUGAACAGUUAAUAAACUGACAUUUUCA	chr17:35875442-35875732(-)$1	290	199	231	14.0321
CCUGCUUCUGGCUGCCAGCAGCUGGCUGGGGG	chr17:76108386-76108759(-)$1	373	201	233	13.8772
UGACUUGUCUGCUGAGGCCGGCUGGAGGGGAC	chr2:131808751-131809018(-)$1	267	199	231	13.6485
UCAUCCAUUGGCUCUGCAGGGCAGGGGUGAGG	chr9:136228792-136229032(-)$1	240	8	40	15.5472
CUUUGUCCUUGCCACCAAUGGCGGGAGGAGGG	chr20:62589029-62589270(-)$1	241	125	157	10.9690
AUGGGCCCUUAGGCCUGGCUGGGCCCAUUACA	chr16:2648146-2648419(+)$1	273	173	205	11.9861
cuagaaauacuggugcacaccaccaugccuag	chr22:24970543-24970787(+)$1	244	97	129	14.6933
AAcaaaccauauauuuauguauuucauuguuc	chr19:39358889-39359175(-)$1	286	219	251	14.3188
AGCAGCCUGUGGCAUCUUUGCCUUGGGCUGCU	chr20:30252694-30252946(-)$1	252	27	59	15.5199
AGUCCCAACCCGGGCCUGCCCGGGAGGAGCGC	chr9:140175374-140175666(+)$1	292	217	249	10.6056
gucuugaacucuuggccucaagcaguccucuc	chr9:115446511-115446765(-)$1	254	138	170	12.6914
ucgguucuugagauacaaaucugccaaugcuc	chr19:29105935-29106172(+)$1	237	141	173	15.3621
CAGGGGUCACUGCUUGUCAGCUCAGGGCCCUG	chr8:143817998-143818311(+)$1	313	92	124	13.6244
ucucggcucacagaaaccucugccucccgggu	chr22:41996048-41996284(-)$1	236	149	181	15.6304
UCUUUGUUUCUCUCACCUGAGAGAAACGCAGG	chr19:5152093-5152430(+)$1	337	276	308	12.9185
UGGGGUGGGAGGUGAGAGCACCACCCAGCCCA	chrX:109417143-109417413(+)$1	270	151	183	13.1638
CGACCCGGGCUGGCGGUGGUUUCCGGUUCCGC	chr19:6279723-6280023(-)$1	300	40	72	10.8401
AACCCAGGCUGGUGUCCGCAUCUGUCCCUGGG	chr22:39826530-39826798(+)$1	268	182	214	14.4878
GCAGUGAUAGAGCUGAGAGCUCCACCCCCACA	chr11:869219-869464(-)$1	245	41	73	11.6458
UGGAGCUGAAUCAGACGCUGACAGUUCUUCAG	chr17:79801080-79801370(-)$1	290	241	273	12.0856
CAUGUGUCUCCUGUAUUGacaguaccacugug	chr19:39982424-39982753(+)$1	329	251	283	15.9943
UGGGAUGGGAUCCCAGGCCAGGGAAAGCCCGU	chr19:11242774-11243062(+)$1	288	113	145	10.8666
UAUAGCUAUAGGCGGCAGUGCCUGUCCCUGGC	chr21:45176997-45177245(+)$1	248	147	179	12.3086
AGCUUUGAGUAACUGUACAGUUUUUCUCGCUG	chr19:39876043-39876311(+)$1	268	179	211	14.3812
GUUGCCAGGGGCUUGAGAAGGUUACUGAGUGA	chr10:102121839-102122093(+)$1	254	142	174	11.9649
UGGGGCGCGGCGGCCGCGGCUGCGACACCCCA	chr19:811237-811521(+)$1	284	43	75	12.8611
gcugaggcaguaagaucacuugagcccaggag	chr10:75008696-75008913(-)$1	217	117	149	15.2595
GGGGGAGGCAGGCUCACUGGCCAUUUUCCCUA	chr17:74078943-74079194(-)$1	251	4	36	16.4945
UGCCCUCCAGCUUGUAUUUAAGUCCCUGGGCU	chr11:66044690-66044941(+)$1	251	88	120	13.4997
ACACUGGGAGGGGGGGGCUCUCCUCUCGGUGC	chr19:47724560-47724809(-)$1	249	109	141	13.3994
GCCACAUCACUUCCCACUGGAAAUCUCUGUGG	chr17:79890698-79890962(-)$1	264	9	41	12.9394
GUUUGGGGGAAGGUUUCAGCCUCUCCCCACUC	chr5:154194106-154194330(+)$1	224	164	196	12.6687
GCCAGCCCUGAGCCUGCAGGCCCUUCAGGCUC	chr1:33237159-33237407(+)$1	248	12	44	11.7493
GGUGCCUUGUGUGGGUCCCCGUCCUUGGCUUU	chr20:3846960-3847263(+)$1	303	24	56	11.8174

#DB
((.(((...((.((....))..))...)))))	chr1:38174119-38174377(+)$1	1	58	90	10.6667
.(((((((..((((....))))......))))	chr3:48786825-48787085(-)$1	1	224	256	12.1771
.(((..((((.(((....))).))))..))).	chr2:219139383-219139656(-)$1	1	202	234	11.3111
(..(((((..((((....))))))))))))))	chr21:47609112-47609365(-)$1	1	52	84	13.7352
((((((..((((((....).)))))..)))).	chr17:38247859-38248088(+)$1	1	32	64	11.2963
.(.(((((..((((....)))).)))))))))	chr8:144807030-144807312(-)$1	1	210	242	13.5787
(((.((.((.((((....)))).))..)).))	chr8:1780073-1780413(+)$1	1	102	134	12.6102
(((..(((((.((((...)))).))))).)))	chr7:65619181-65619415(+)$1	1	168	200	10.5012
(((((((...((((....))))...)))))))	chr9:137023885-137024191(+)$1	1	64	96	16.2073
)(((..((((((((....)))).))))..)))	chr1:151091616-151091874(+)$1	1	48	80	12.8753
(.....(((((.((....)))))))...))))	chr9:131152756-131153008(+)$1	1	74	106	9.8938
....(((.(((((....))))).)))...)))	chr17:40673161-40673535(+)$1	1	234	266	11.6383
(((.(((.(.((((....)))))))).)))))	chr11:61633203-61633498(+)$1	1	43	75	14.8179
((((((((.(.(((...))).).)))))))))	chr17:40554532-40554779(-)$1	1	181	213	10.7396
((..(((...((((....))))...)))..))	chr3:48556175-48556490(-)$1	1	81	113	15.7168
(((..(((((((((....))))))))).))))	chr2:219139456-219139705(-)$1	1	34	66	12.0544
..((.....(((((....)))))....))(((	chr11:64895158-64895417(-)$1	1	79	111	10.3274
.((((....(((((....)))))))).).)))	chr1:11849358-11849599(-)$1	1	144	176	14.0433
...(((...(((((....))))))))....))	chr17:35875442-35875732(-)$1	1	199	231	14.0321
((.(((...(((((....)))))))).)))))	chr17:76108386-76108759(-)$1	1	201	233	13.8772
)))(((.(((((((....)))).))).))).(	chr2:131808751-131809018(-)$1	1	199	231	13.6485
((((((....((((....))))..)))))))(	chr9:136228792-136229032(-)$1	1	8	40	15.5472
((((.(.(((((((....))))))).).))))	chr20:62589029-62589270(-)$1	1	125	157	10.9690
((((((((...(((...)))))))))))))))	chr16:2648146-2648419(+)$1	1	173	205	11.9861
((((..((..((((....))))..))..))))	chr22:24970543-24970787(+)$1	1	97	129	14.6933
(((((.....((((....))))....))))..	chr19:39358889-39359175(-)$1	1	219	251	14.3188
((((((((..((((....))))..))))))))	chr20:30252694-30252946(-)$1	1	27	59	15.5199
..(((...((((((....)))))).)))..))	chr9:140175374-140175666(+)$1	1	217	249	10.6056
(((..(((((((((....)))).)))..))..	chr9:115446511-115446765(-)$1	1	138	170	12.6914
..(((.....((((....)))))))...))))	chr19:29105935-29106172(+)$1	1	141	173	15.3621
(((((.((...(((....)))...)).)))))	chr8:143817998-143818311(+)$1	1	92	124	13.6244
.(((((....((((....))))....))))).	chr22:41996048-41996284(-)$1	1	149	181	15.6304
(((.((((((((((....)))))))))).)))	chr19:5152093-5152430(+)$1	1	276	308	12.9185
((((.((((.((((....)))).)))).))).	chrX:109417143-109417413(+)$1	1	151	183	13.1638
.((.(((((..(((....)))))))).)))))	chr19:6279723-6280023(-)$1	1	40	72	10.8401
..((((((..((((....))))....))))))	chr22:39826530-39826798(+)$1	1	182	214	14.4878
(..(((...(((((...))))))))..)))..	chr11:869219-869464(-)$1	1	41	73	11.6458
((((((((..((((...)))))))))))...)	chr17:79801080-79801370(-)$1	1	241	273	12.0856
((.(((....((((....))))...)))))))	chr19:39982424-39982753(+)$1	1	251	283	15.9943
(((.(((((.((((......))))...)))))	chr19:11242774-11243062(+)$1	1	113	145	10.8666
(.(((..(((((((....)))))))..)))))	chr21:45176997-45177245(+)$1	1	147	179	12.3086
(((...(((.((((....)))).)))..))))	chr19:39876043-39876311(+)$1	1	179	211	14.3812
))))))((..((((....))))..)).(((..	chr10:102121839-102122093(+)$1	1	142	174	11.9649
(((((.(..(((((....)))))..).)))))	chr19:811237-811521(+)$1	1	43	75	12.8611
.(((.(((..((((....)))).))))))...	chr10:75008696-75008913(-)$1	1	117	149	15.2595
((((((((..((((....)))).)))))))))	chr17:74078943-74079194(-)$1	1	4	36	16.4945
.((((....(((((....)))))....)))).	chr11:66044690-66044941(+)$1	1	88	120	13.4997
.(((((((((((((....))))))))))))))	chr19:47724560-47724809(-)$1	1	109	141	13.3994
((((((....((((....)))).....)))))	chr17:79890698-79890962(-)$1	1	9	41	12.9394
(..((((((.((((....)))).))))))..)	chr5:154194106-154194330(+)$1	1	164	196	12.6687
(..((((.((((((....)))...))))))).	chr1:33237159-33237407(+)$1	1	12	44	11.7493
((.(((..(.((((....))).))..)))..)	chr20:3846960-3847263(+)$1	1	24	56	11.8174

#PSSM
e : 0.19	d : 0.15	[ : 0.11	f : 0.07	c : 0.07	g : 0.07	# : 0.05	= : 0.05	! : 0.05	: : 0.03	i : 0.03	b : 0.03	" : 0.01	
e : 0.15	! : 0.13	g : 0.11	c : 0.11	d : 0.11	= : 0.07	f : 0.05	b : 0.05	a : 0.03	# : 0.03	i : 0.03	$ : 0.01	: : 0.01	[ : 0.01	
c : 0.17	e : 0.13	g : 0.11	[ : 0.09	! : 0.09	d : 0.09	= : 0.07	b : 0.05	f : 0.05	# : 0.03	i : 0.03	$ : 0.01	
c : 0.28	g : 0.11	[ : 0.09	e : 0.07	d : 0.07	! : 0.07	f : 0.07	= : 0.07	i : 0.03	$ : 0.01	# : 0.01	b : 0.01	" : 0.01	
c : 0.26	! : 0.11	e : 0.11	g : 0.09	= : 0.09	d : 0.07	[ : 0.05	f : 0.05	$ : 0.03	i : 0.03	b : 0.01	" : 0.01	
c : 0.21	e : 0.11	g : 0.09	! : 0.07	$ : 0.07	= : 0.07	d : 0.05	i : 0.05	f : 0.05	b : 0.03	# : 0.03	" : 0.03	[ : 0.03	a : 0.01	
e : 0.11	# : 0.11	" : 0.09	c : 0.09	d : 0.07	= : 0.07	b : 0.07	g : 0.05	! : 0.05	[ : 0.05	i : 0.05	$ : 0.05	f : 0.03	a : 0.01	
" : 0.13	e : 0.11	# : 0.11	g : 0.07	b : 0.07	c : 0.07	= : 0.07	d : 0.05	! : 0.05	[ : 0.05	i : 0.05	$ : 0.05	f : 0.03	
! : 0.21	" : 0.15	e : 0.11	# : 0.11	c : 0.07	d : 0.05	$ : 0.05	a : 0.03	g : 0.03	f : 0.03	= : 0.03	b : 0.01	[ : 0.01	i : 0.01	
! : 0.21	e : 0.21	[ : 0.13	" : 0.07	# : 0.07	c : 0.05	d : 0.03	g : 0.03	$ : 0.03	= : 0.03	b : 0.01	a : 0.01	i : 0.01	f : 0.01	
d : 0.51	e : 0.19	[ : 0.05	g : 0.03	" : 0.03	= : 0.03	b : 0.01	i : 0.01	f : 0.01	! : 0.01	c : 0.01	a : 0.01	
d : 0.53	e : 0.17	c : 0.13	[ : 0.03	g : 0.03	= : 0.03	i : 0.01	f : 0.01	
d : 0.53	e : 0.17	c : 0.13	b : 0.03	g : 0.03	= : 0.03	i : 0.01	f : 0.01	
d : 0.53	c : 0.13	e : 0.13	b : 0.03	g : 0.03	= : 0.03	a : 0.01	m : 0.01	i : 0.01	f : 0.01	
m : 0.88	l : 0.07	d : 0.01	o : 0.01	
m : 0.88	l : 0.09	o : 0.01	
m : 0.88	l : 0.09	o : 0.01	
m : 0.86	e : 0.03	c : 0.03	l : 0.01	d : 0.01	o : 0.01	
d : 0.51	e : 0.15	c : 0.13	b : 0.03	g : 0.03	= : 0.03	a : 0.01	i : 0.01	f : 0.01	o : 0.01	
d : 0.51	e : 0.15	c : 0.13	b : 0.03	g : 0.03	= : 0.03	] : 0.01	i : 0.01	f : 0.01	o : 0.01	
d : 0.53	e : 0.19	c : 0.09	= : 0.05	g : 0.03	2 : 0.01	] : 0.01	i : 0.01	f : 0.01	
d : 0.51	e : 0.21	g : 0.05	= : 0.05	] : 0.03	3 : 0.03	2 : 0.01	a : 0.01	i : 0.01	f : 0.01	
] : 0.24	e : 0.19	3 : 0.09	2 : 0.07	g : 0.05	= : 0.05	4 : 0.05	d : 0.03	a : 0.03	c : 0.03	b : 0.01	6 : 0.01	i : 0.01	f : 0.01	5 : 0.01	
c : 0.21	e : 0.11	3 : 0.09	4 : 0.09	2 : 0.09	d : 0.07	= : 0.07	g : 0.05	b : 0.03	i : 0.03	f : 0.03	6 : 0.01	5 : 0.01	a : 0.01	
c : 0.23	e : 0.11	3 : 0.09	4 : 0.09	b : 0.07	g : 0.07	= : 0.07	d : 0.05	i : 0.05	2 : 0.03	6 : 0.01	] : 0.01	5 : 0.01	f : 0.01	
c : 0.24	2 : 0.09	4 : 0.09	3 : 0.07	e : 0.07	= : 0.07	d : 0.05	g : 0.05	i : 0.05	b : 0.05	6 : 0.01	] : 0.01	a : 0.01	5 : 0.01	f : 0.01	
2 : 0.15	] : 0.13	c : 0.11	3 : 0.09	e : 0.07	= : 0.07	g : 0.05	d : 0.05	i : 0.05	4 : 0.05	f : 0.03	6 : 0.01	a : 0.01	: : 0.01	5 : 0.01	
c : 0.19	e : 0.15	2 : 0.09	= : 0.09	d : 0.07	g : 0.07	b : 0.05	3 : 0.05	] : 0.05	i : 0.03	f : 0.03	6 : 0.01	a : 0.01	4 : 0.01	
c : 0.17	e : 0.13	d : 0.11	g : 0.09	f : 0.09	b : 0.07	= : 0.07	] : 0.05	2 : 0.05	3 : 0.03	i : 0.03	a : 0.01	4 : 0.01	
c : 0.19	e : 0.19	d : 0.13	g : 0.09	f : 0.07	2 : 0.07	= : 0.07	b : 0.03	i : 0.03	4 : 0.03	] : 0.01	3 : 0.01	
e : 0.21	d : 0.15	c : 0.13	f : 0.09	g : 0.09	= : 0.07	2 : 0.05	i : 0.03	3 : 0.03	4 : 0.03	b : 0.01	: : 0.01	" : 0.01	
e : 0.21	d : 0.15	f : 0.09	] : 0.09	c : 0.09	g : 0.07	i : 0.05	= : 0.05	2 : 0.03	4 : 0.03	3 : 0.01	" : 0.01	a : 0.01	b : 0.01	

#score	678.0455057743809
#seq	52
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_UTR_m1_run1.txt

#BEAR
ccc[iiiiiiiii!!ccclllccc22iiiiiiiii]	chr7:5569495-5569749(-)$1	254	207	243	13.8573
[ggggggg!!a[bb[bbmmmmbb]bba22ggggggg	chrX:152953475-152953706(+)$1	231	192	228	10.6890
cc[iiiiiiiiifffffflllffffff333iiiiii	chr19:18548429-18548688(-)$1	259	153	189	12.1926
iiiiibb[==========lll==========]bbFF	chr7:5569455-5569695(-)$1	240	183	219	11.6344
ggggggg[dddd!!ccclllccc]dddd]ggggggg	chr5:179248031-179248276(+)$1	245	184	220	12.2832
eeggggggg[a[a[cccoooooocccaa]ggggggg	chr19:1407621-1407886(+)$1	265	193	229	14.1032
==========[a[bbqqqqqqqqbb]a]========	chr22:20105341-20105596(+)$1	255	19	55	10.3574
""ccc[bb[ffffff[annnnnaffffffbbccc]c	chr19:18668655-18668969(+)$1	314	113	149	9.6026
[a[dddd####ffffffnnnnnffffff4444dddd	chr1:1822248-1822535(-)$1	287	32	68	10.4719
$ccc[a[bb$$$$$cccnnnnnccc4444bb]a]cc	chr15:64752848-64753083(+)$1	235	18	54	11.9063
ggggggg[dddd!!abboooooobb]a22dddd]gg	chr5:154136577-154136852(+)$1	275	71	107	13.0088
ii[ggggggg[ffffffnnnnnffffff22gggggg	chr12:109124501-109124760(-)$1	259	154	190	11.8234
=======[eeeee[bboooooobb22eeeee22===	chr7:151216103-151216386(-)$1	283	49	85	12.4477
ccc[eeeeeaccc[bboooooobb22ccc]a]eeee	chr9:126692129-126692438(-)$1	309	181	217	12.1894
:eeeee!!dddd[cccooooooccc]dddd]eeeee	chr2:183902919-183903188(-)$1	269	45	81	10.4384
g[ccc!!cccccc!!ddddllldddd22ccc]ccc3	chr12:109124822-109125061(-)$1	239	188	224	11.1105
ee!!ffffff[a"""cccmmmmccc333a]ffffff	chr17:73775389-73775800(-)$1	411	182	218	11.2071
!ddddccc"""ccc[a!!ammmma22a]ccc22ccc	chr8:30669838-30670090(-)$1	252	40	76	10.0414
gggggg[dddd"""cccooooooccc4444dddd]g	chr5:177022685-177022937(+)$1	252	46	82	13.3888
=============[ccclllccc333==========	chr11:75111366-75111572(+)$1	206	26	62	14.7168
bdddd[a"""ccc[ddddllldddd]ccc22a]ddd	chr2:97535541-97535801(-)$1	260	1	37	10.7015
ddbb[ffffff!!a[bboooooobb]a22ffffff]	chr19:49605893-49606148(+)$1	255	70	106	10.3194
ggggggg"""cccssssssssssccc4444gggggg	chr19:16187751-16188015(+)$1	264	144	180	10.3600
iiiieeeee[ccc[bbmmmmbbccc]eeeee]iiii	chr21:46494356-46494613(+)$1	257	68	104	10.1354
fff[eeeee[bb[ddddnnnnndddd]bb4444eee	chr19:575243-575523(+)$1	280	19	55	9.9677
hhhhhhh"""cccddddmmmmdddd333ccc333hh	chr21:35287931-35288174(-)$1	243	98	134	10.8703
=====[eeeee[bb[ccclllccc]bb]eeeee===	chr1:27022552-27022811(+)$1	259	145	181	11.3608
d"""ccc####bb[a[bbnnnnnbb]a]bb]ccc22	chr3:128211717-128211962(+)$1	245	71	107	10.6348
####ccc[ccc!!eeeeellleeeeeccc]cccggg	chr7:5569348-5569622(-)$1	274	129	165	11.3240
ggggggg[a[bb[cccooooooccc]bb]a22gggg	chr19:18547577-18547844(-)$1	267	113	149	13.6217
f[eeeee"""eeeee[annnnna]eeeee22eeeee	chr21:46644319-46644582(+)$1	263	183	219	10.3735
hhhhhhh"""bb[ddddnnnnnddddbb4444hhhh	chr20:35491744-35491989(-)$1	245	56	92	10.8242
hhhhhhh[a[a[a[cccnnnnnccc]a]a]a]hhhh	chr14:100704552-100704804(-)$1	252	99	135	13.9325
ff!!eeeee[bb"""bbnnnnnbb333bb]eeeee]	chr5:138629681-138629966(+)$1	285	91	127	11.8050
c!!a[ccc[dddd!!aooooooa22dddd]ccc]a5	chr7:77166711-77166970(+)$1	259	103	139	10.9148
!hhhhhhhh!!ffffffnnnnnffffffhhhhhhhh	chr19:5719720-5720101(-)$1	381	181	217	9.2771
cc####cccccc[eeeeemmmmeeeee]ccc]ccc4	chr2:242255462-242255711(+)$1	249	162	198	9.5293
c::==========!!accclllccc]a22=======	chr11:64014149-64014454(-)$1	305	137	173	12.0263
ggggggg[ddddxxxxxxxxxxxxxxxdddd]gggg	chr16:31044940-31045257(+)$1	317	272	308	9.8611
:============[ccclllccc333==========	chr11:75111387-75111617(+)$1	230	5	41	13.5908
ggggggg!!ccc[ddddnnnnnddddccc]gggggg	chr8:102217325-102217606(-)$1	281	190	226	13.0479
eeeee!!eeeee[cccooooooccc]eeeee333ee	chr19:18547997-18548296(-)$1	299	127	163	11.8338
ggggg"""eeeee[ddddnnnnndddd]eeeeeggg	chr22:20067992-20068268(+)$1	276	92	128	10.7400
d[dddd[dddd[a[cccmmmmccc22a]dddd]ddd	chr19:34287171-34287445(+)$1	274	36	72	9.9547
iii"""dddd$$$$$bboooooobb22dddd]iiii	chr17:46653875-46654119(-)$1	244	157	193	11.4228
ggggccc[ccc[cccccclllccc22ccc]cccccc	chr2:54197784-54198040(-)$1	256	152	188	13.0681
dddd[ccc$$$$$eeeeellleeeeeccc]dddd]b	chr7:150779628-150779857(-)$1	229	110	146	8.8243
gggggg[bb[ccc[bboooooobb]ccc22bb22gg	chr1:110527543-110527808(+)$1	265	4	40	11.7406
eee==========!!cccmmmmccc==========:	chr7:5634092-5634354(+)$1	262	176	212	11.9395
f"""ccc[a!!bb[ccclllcccbb333a]ccc22f	chr1:153918927-153919200(-)$1	273	140	176	12.6008

#otherMatches

#Seq PSSM
UUUGAACCGGGCGGAGGCGGGGCUGGCGCCCGGUUG	chr7:5569495-5569749(-)$1	254	207	243	13.8573
GUCGGGCGAGGAGCCGCCGCAGCCGCCGCCGCCCGA	chrX:152953475-152953706(+)$1	231	192	228	10.6890
CGCCCGGCAGGUGCCCCGGCUCGGGGUCAUGCUUGU	chr19:18548429-18548688(-)$1	259	153	189	12.1926
CGGUUGGGAGGGGGUUGGGGCCUGGCUUCCUGCCGC	chr7:5569455-5569695(-)$1	240	183	219	11.6344
UCCCUUCUCGGCGACGCCUGGCGGGCCGUGAGGGGG	chr5:179248031-179248276(+)$1	245	184	220	12.2832
GCGCGGGCCUGCGUCUccgccccgagcccggcccgc	chr19:1407621-1407886(+)$1	265	193	229	14.1032
CUGCGGAGUUGGGGCGUUUGGGGGUGCAGGCUCUGC	chr22:20105341-20105596(+)$1	255	19	55	10.3574
GGGACUCCAGGGCCGCGGGGAACCGGUCCGGGUCGG	chr19:18668655-18668969(+)$1	314	113	149	9.6026
AUGGCUGGAGGCGUCUGAGGggcggacggaggcggc	chr1:1822248-1822535(-)$1	287	32	68	10.4719
aggcgcggggagggggcagagagccagagccggagc	chr15:64752848-64753083(+)$1	235	18	54	11.9063
gcccgcggcgcggcccgAGUGUGCGUGUGCGCGGCG	chr5:154136577-154136852(+)$1	275	71	107	13.0088
UGGGCCCUGCAGAUCUCGGUUGGGGGUCAGGCGGGG	chr12:109124501-109124760(-)$1	259	154	190	11.8234
ccuccgcgggccgggcgggcagguggcggccgggcg	chr7:151216103-151216386(-)$1	283	49	85	12.4477
CCGGUcggccgcgggcgggcgggcagcgcagcgccg	chr9:126692129-126692438(-)$1	309	181	217	12.1894
ACCUAGUGGAGCAGCCGGGGAAGGCGGCUCGUUggg	chr2:183902919-183903188(-)$1	269	45	81	10.4384
GACGAGGCUGCCCAGGGAAGGCUUUUAGGGGUCAGG	chr12:109124822-109125061(-)$1	239	188	224	11.1105
GGGGCCGGGAGGUUUCCCCUUGGGGCUUUGUUCCGG	chr17:73775389-73775800(-)$1	411	182	218	11.2071
acggcggcggagggagaggggagcggcgcccgggcc	chr8:30669838-30670090(-)$1	252	40	76	10.0414
GGGGGAGGGGAAUGGGCAGGCAAGCCAGUCUUCUGU	chr5:177022685-177022937(+)$1	252	46	82	13.3888
UUAGAGCAGUUUCUUGUUUUGCAUGUGGAACUGUUU	chr11:75111366-75111572(+)$1	206	26	62	14.7168
CCGCCGUGGUGGCGCGGGGAGCCCGAGCCUAggggc	chr2:97535541-97535801(-)$1	260	1	37	10.7015
GAGCUCCCUAAAGUGCAUGGAAUUGGGGCUUGGGGU	chr19:49605893-49606148(+)$1	255	70	106	10.3194
GUGGGGGAGAAUGAGGAUGAAAACGUGGAGCUUCCA	chr19:16187751-16188015(+)$1	264	144	180	10.3600
ccccucggcgugcgcgcgcccggcgggccggcgggg	chr21:46494356-46494613(+)$1	257	68	104	10.1354
CAACACAGCCUUGGCCCGUGUGGGGUGGACACUGCU	chr19:575243-575523(+)$1	280	19	55	9.9677
CGGGAGAAGAUGGCUGCCCCAGCAGUGUCCGGGCUC	chr21:35287931-35288174(-)$1	243	98	134	10.8703
ccgccgccgccAGCCCGGAGCCUGAGCCggcggggc	chr1:27022552-27022811(+)$1	259	145	181	11.3608
UAGAGCUGGGAGCAGGGCGAGGUGCGCGGCAGGCGG	chr3:128211717-128211962(+)$1	245	71	107	10.6348
GCCUGGCUUCCUGCCGCGCGCCGCGGGGACGCCUCC	chr7:5569348-5569622(-)$1	274	129	165	11.3240
GGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGU	chr19:18547577-18547844(-)$1	267	113	149	13.6217
UACUGGGGGGCGGCUGUGAGGAGGAGUUGGGUUCAG	chr21:46644319-46644582(+)$1	263	183	219	10.3735
CGAGCCCAGAGCAGCGGAGAGACCGCGCGGCGGGGC	chr20:35491744-35491989(-)$1	245	56	92	10.8242
gggccgcgcggggagcggcuggcgcgugcggggcgg	chr14:100704552-100704804(-)$1	252	99	135	13.9325
AGAUUUUGGGUGAAGAGGUGCGCUGACCGGCCGAGC	chr5:138629681-138629966(+)$1	285	91	127	11.8050
gggcgggcggcgggggggccAGCGACCGCAGCCGGG	chr7:77166711-77166970(+)$1	259	103	139	10.9148
GCGGAGGCGCAUUCUCGGGGGGCGAGGACGCCUCCG	chr19:5719720-5720101(-)$1	381	181	217	9.2771
AGGCCCGGGCGCGGGAGUGGGGAUUCCGGUGACCCC	chr2:242255462-242255711(+)$1	249	162	198	9.5293
CAAGCCCGGGGGCUCCGCAUGCUGCAGCUgcccccg	chr11:64014149-64014454(-)$1	305	137	173	12.0263
UCUGGUCUUCGGGAUAGGGAGGGGUGGCUGAUGGCC	chr16:31044940-31045257(+)$1	317	272	308	9.8611
UUAGAGCAGUUUCUUGUUUUGCAUGUGGAACUGUUU	chr11:75111387-75111617(+)$1	230	5	41	13.5908
CCGCCGGUCAGCUGCCAGAGUGUGGCGCUCCCGGUG	chr8:102217325-102217606(-)$1	281	190	226	13.0479
GCUGCAGGCGGACCCCGUGGAAGGGUUUCGCGAGGU	chr19:18547997-18548296(-)$1	299	127	163	11.8338
CGCCUccggggcuggggggcgggccccgggcccAGG	chr22:20067992-20068268(+)$1	276	92	128	10.7400
ggggccugggcgcaccgcucccgggaggguccuggc	chr19:34287171-34287445(+)$1	274	36	72	9.9547
CCCACACUUUAUAUACGAAUAAACGCAGAAGAGGGG	chr17:46653875-46654119(-)$1	244	157	193	11.4228
cccccggagccgggcgggcgucccgagccgggcccg	chr2:54197784-54198040(-)$1	256	152	188	13.0681
CCCUGUGGAGGUUCCAGGGCUCCUGGCCAGGGGGCC	chr7:150779628-150779857(-)$1	229	110	146	8.8243
CGACGCAGgggccggcaggagggugggcgaucgcgu	chr1:110527543-110527808(+)$1	265	4	40	11.7406
UCCUCGCGCCGCGGCCCGGGAACGGCGUGGCGCGGA	chr7:5634092-5634354(+)$1	262	176	212	11.9395
GGGAGCUGGGAGGACCGAGCCGGCCGAGCGAGCAGC	chr1:153918927-153919200(-)$1	273	140	176	12.6008

#DB
(((.(((((((((..(((...)))..))))))))).	chr7:5569495-5569749(-)$1	1	207	243	13.8573
.(((((((..(.((.((....)).)))..)))))))	chrX:152953475-152953706(+)$1	1	192	228	10.6890
((.(((((((((((((((...))))))...))))))	chr19:18548429-18548688(-)$1	1	153	189	12.1926
)))))((.((((((((((...)))))))))).))))	chr7:5569455-5569695(-)$1	1	183	219	11.6344
(((((((.((((..(((...))).)))).)))))))	chr5:179248031-179248276(+)$1	1	184	220	12.2832
))(((((((.(.(.(((......))))).)))))))	chr19:1407621-1407886(+)$1	1	193	229	14.1032
((((((((((.(.((........)).).))))))))	chr22:20105341-20105596(+)$1	1	19	55	10.3574
..(((.((.((((((.(.....)))))))))))).)	chr19:18668655-18668969(+)$1	1	113	149	9.6026
.(.((((....((((((.....))))))....))))	chr1:1822248-1822535(-)$1	1	32	68	10.4719
.(((.(.((.....(((.....)))....)).).))	chr15:64752848-64753083(+)$1	1	18	54	11.9063
(((((((.((((..(((......)).)..)))).))	chr5:154136577-154136852(+)$1	1	71	107	13.0088
((.(((((((.((((((.....))))))..))))))	chr12:109124501-109124760(-)$1	1	154	190	11.8234
(((((((.(((((.((......))..)))))..)))	chr7:151216103-151216386(-)$1	1	49	85	12.4477
(((.(((((((((.((......))..))).).))))	chr9:126692129-126692438(-)$1	1	181	217	12.1894
.(((((..((((.(((......))).)))).)))))	chr2:183902919-183903188(-)$1	1	45	81	10.4384
(.(((..((((((..((((...))))..))).))).	chr12:109124822-109125061(-)$1	1	188	224	11.1105
((..((((((.(...(((....)))...).))))))	chr17:73775389-73775800(-)$1	1	182	218	11.2071
.(((((((...(((.(..(....)..).)))..)))	chr8:30669838-30670090(-)$1	1	40	76	10.0414
((((((.((((...(((......)))....)))).)	chr5:177022685-177022937(+)$1	1	46	82	13.3888
(((((((((((((.(((...)))...))))))))))	chr11:75111366-75111572(+)$1	1	26	62	14.7168
(((((.(...(((.((((...)))).)))..).)))	chr2:97535541-97535801(-)$1	1	1	37	10.7015
))((.((((((..(.((......)).)..)))))).	chr19:49605893-49606148(+)$1	1	70	106	10.3194
(((((((...(((..........)))....))))))	chr19:16187751-16188015(+)$1	1	144	180	10.3600
(((((((((.(((.((....))))).))))).))))	chr21:46494356-46494613(+)$1	1	68	104	10.1354
(((.(((((.((.((((.....)))).))....)))	chr19:575243-575523(+)$1	1	19	55	9.9677
(((((((...(((((((....))))...)))...))	chr21:35287931-35288174(-)$1	1	98	134	10.8703
(((((.(((((.((.(((...))).)).))))))))	chr1:27022552-27022811(+)$1	1	145	181	11.3608
(...(((....((.(.((.....)).).)).)))..	chr3:128211717-128211962(+)$1	1	71	107	10.6348
....(((.(((..(((((...)))))))).))))))	chr7:5569348-5569622(-)$1	1	129	165	11.3240
(((((((.(.((.(((......))).)).)..))))	chr19:18547577-18547844(-)$1	1	113	149	13.6217
(.(((((...(((((.(.....).)))))..)))))	chr21:46644319-46644582(+)$1	1	183	219	10.3735
(((((((...((.((((.....))))))....))))	chr20:35491744-35491989(-)$1	1	56	92	10.8242
(((((((.(.(.(.(((.....))).).).).))))	chr14:100704552-100704804(-)$1	1	99	135	13.9325
((..(((((.((...((.....))...)).))))).	chr5:138629681-138629966(+)$1	1	91	127	11.8050
(..(.(((.((((..(......)..)))).))).).	chr7:77166711-77166970(+)$1	1	103	139	10.9148
.((((((((..((((((.....))))))))))))))	chr19:5719720-5720101(-)$1	1	181	217	9.2771
((....((((((.(((((....))))).))).))).	chr2:242255462-242255711(+)$1	1	162	198	9.5293
)..((((((((((..((((...))).)..)))))))	chr11:64014149-64014454(-)$1	1	137	173	12.0263
(((((((.((((...............)))).))))	chr16:31044940-31045257(+)$1	1	272	308	9.8611
.((((((((((((.(((...)))...))))))))))	chr11:75111387-75111617(+)$1	1	5	41	13.5908
(((((((..(((.((((.....))))))).))))))	chr8:102217325-102217606(-)$1	1	190	226	13.0479
(((((..(((((.(((......))).)))))...))	chr19:18547997-18548296(-)$1	1	127	163	11.8338
(((((...(((((.((((.....)))).))))))))	chr22:20067992-20068268(+)$1	1	92	128	10.7400
(.((((.((((.(.(((....)))..).)))).)))	chr19:34287171-34287445(+)$1	1	36	72	9.9547
(((...((((.....((......))..)))).))))	chr17:46653875-46654119(-)$1	1	157	193	11.4228
(((((((.(((.((((((...)))..))).))))))	chr2:54197784-54198040(-)$1	1	152	188	13.0681
((((.(((.....(((((...)))))))).)))).)	chr7:150779628-150779857(-)$1	1	110	146	8.8243
((((((.((.(((.((......)).)))..))..))	chr1:110527543-110527808(+)$1	1	4	40	11.7406
)))((((((((((..(((....))))))))))))).	chr7:5634092-5634354(+)$1	1	176	212	11.9395
(...(((.(..((.(((...)))))...).)))..)	chr1:153918927-153919200(-)$1	1	140	176	12.6008

#PSSM
g : 0.21	c : 0.12	i : 0.08	e : 0.08	= : 0.08	d : 0.08	f : 0.08	h : 0.06	[ : 0.04	: : 0.04	! : 0.04	" : 0.02	$ : 0.02	b : 0.02	# : 0.02	
g : 0.21	c : 0.10	e : 0.10	= : 0.10	i : 0.08	d : 0.08	h : 0.08	" : 0.06	[ : 0.06	f : 0.04	a : 0.02	# : 0.02	! : 0.02	: : 0.02	
g : 0.23	c : 0.10	= : 0.10	e : 0.08	d : 0.08	h : 0.08	[ : 0.06	i : 0.06	! : 0.06	" : 0.04	# : 0.04	b : 0.02	f : 0.02	: : 0.02	
g : 0.25	= : 0.14	d : 0.10	h : 0.08	[ : 0.06	i : 0.06	c : 0.06	e : 0.06	" : 0.06	! : 0.04	# : 0.04	b : 0.02	a : 0.02	
g : 0.23	= : 0.14	e : 0.14	c : 0.12	d : 0.08	[ : 0.08	h : 0.08	i : 0.06	f : 0.02	# : 0.02	" : 0.02	
g : 0.21	c : 0.14	= : 0.12	e : 0.12	h : 0.08	[ : 0.06	i : 0.04	d : 0.04	! : 0.04	f : 0.04	" : 0.04	b : 0.02	a : 0.02	# : 0.02	
g : 0.18	c : 0.16	= : 0.12	e : 0.12	[ : 0.08	h : 0.08	! : 0.06	i : 0.04	b : 0.04	d : 0.04	f : 0.04	a : 0.02	" : 0.02	
[ : 0.19	e : 0.12	" : 0.12	= : 0.10	c : 0.10	g : 0.06	b : 0.06	d : 0.06	i : 0.04	# : 0.04	! : 0.04	f : 0.04	h : 0.02	
e : 0.16	d : 0.14	= : 0.12	" : 0.12	c : 0.08	a : 0.06	i : 0.04	! : 0.04	g : 0.04	[ : 0.04	# : 0.04	b : 0.04	f : 0.04	h : 0.02	$ : 0.02	
d : 0.16	[ : 0.14	= : 0.12	" : 0.12	c : 0.10	e : 0.08	! : 0.06	f : 0.06	i : 0.04	# : 0.04	$ : 0.04	g : 0.02	a : 0.02	
c : 0.21	d : 0.14	= : 0.10	e : 0.10	b : 0.08	a : 0.06	[ : 0.06	$ : 0.06	i : 0.04	f : 0.04	# : 0.04	! : 0.04	" : 0.02	
c : 0.19	[ : 0.12	b : 0.12	= : 0.10	d : 0.10	f : 0.08	e : 0.08	$ : 0.06	i : 0.04	a : 0.04	! : 0.04	" : 0.02	
c : 0.18	[ : 0.16	f : 0.10	= : 0.10	b : 0.08	! : 0.08	a : 0.06	$ : 0.06	e : 0.06	" : 0.06	i : 0.02	d : 0.02	x : 0.02	
[ : 0.25	! : 0.14	f : 0.10	c : 0.10	d : 0.08	e : 0.08	b : 0.06	" : 0.06	$ : 0.04	= : 0.02	a : 0.02	s : 0.02	x : 0.02	
c : 0.25	d : 0.12	! : 0.10	f : 0.10	b : 0.10	[ : 0.08	e : 0.08	a : 0.04	" : 0.04	= : 0.02	s : 0.02	x : 0.02	$ : 0.02	
c : 0.34	b : 0.18	d : 0.14	f : 0.08	[ : 0.06	a : 0.06	e : 0.06	= : 0.02	q : 0.02	s : 0.02	x : 0.02	
c : 0.30	o : 0.14	d : 0.14	b : 0.12	f : 0.08	e : 0.06	a : 0.04	= : 0.02	q : 0.02	! : 0.02	s : 0.02	m : 0.02	x : 0.02	
o : 0.23	n : 0.21	c : 0.12	m : 0.08	l : 0.08	d : 0.06	e : 0.06	f : 0.02	= : 0.02	q : 0.02	! : 0.02	s : 0.02	b : 0.02	x : 0.02	
n : 0.25	l : 0.23	o : 0.23	m : 0.14	q : 0.02	d : 0.02	a : 0.02	s : 0.02	c : 0.02	x : 0.02	
l : 0.27	n : 0.25	o : 0.23	m : 0.16	q : 0.02	s : 0.02	x : 0.02	
n : 0.25	o : 0.23	l : 0.19	m : 0.14	c : 0.08	q : 0.02	s : 0.02	b : 0.02	x : 0.02	
n : 0.25	o : 0.23	c : 0.16	m : 0.08	b : 0.04	l : 0.04	d : 0.04	e : 0.04	f : 0.02	= : 0.02	q : 0.02	s : 0.02	x : 0.02	
c : 0.34	d : 0.12	b : 0.10	o : 0.10	f : 0.08	a : 0.06	e : 0.06	n : 0.04	= : 0.02	q : 0.02	m : 0.02	s : 0.02	x : 0.02	
c : 0.32	b : 0.19	d : 0.14	f : 0.10	] : 0.06	e : 0.06	3 : 0.04	= : 0.02	a : 0.02	2 : 0.02	x : 0.02	
c : 0.23	d : 0.16	2 : 0.14	b : 0.14	f : 0.10	e : 0.08	3 : 0.06	] : 0.04	= : 0.02	x : 0.02	
] : 0.21	2 : 0.14	d : 0.14	3 : 0.12	f : 0.10	c : 0.08	e : 0.08	b : 0.04	= : 0.04	4 : 0.02	x : 0.02	
a : 0.19	c : 0.14	f : 0.10	e : 0.10	= : 0.08	d : 0.08	3 : 0.08	4 : 0.06	b : 0.06	2 : 0.04	i : 0.02	] : 0.02	x : 0.02	
] : 0.16	c : 0.14	2 : 0.10	d : 0.10	3 : 0.08	= : 0.08	f : 0.08	e : 0.08	b : 0.08	4 : 0.06	i : 0.02	a : 0.02	
c : 0.19	2 : 0.12	e : 0.12	= : 0.10	4 : 0.10	d : 0.10	] : 0.06	a : 0.06	b : 0.06	i : 0.02	3 : 0.02	f : 0.02	h : 0.02	
] : 0.19	= : 0.12	4 : 0.10	d : 0.10	e : 0.10	2 : 0.08	c : 0.08	g : 0.06	b : 0.06	i : 0.02	3 : 0.02	f : 0.02	a : 0.02	h : 0.02	
c : 0.16	g : 0.12	= : 0.12	d : 0.12	e : 0.12	b : 0.06	4 : 0.06	2 : 0.06	i : 0.04	a : 0.04	] : 0.04	f : 0.04	h : 0.02	
] : 0.18	g : 0.12	c : 0.12	= : 0.10	e : 0.10	d : 0.08	4 : 0.06	2 : 0.06	i : 0.04	f : 0.04	3 : 0.04	a : 0.02	h : 0.02	b : 0.02	
g : 0.16	c : 0.16	e : 0.12	= : 0.10	i : 0.08	d : 0.08	2 : 0.06	h : 0.06	f : 0.04	] : 0.04	3 : 0.04	b : 0.02	a : 0.02	4 : 0.02	
g : 0.19	= : 0.14	c : 0.12	d : 0.10	e : 0.10	i : 0.08	] : 0.06	h : 0.06	f : 0.04	3 : 0.04	2 : 0.04	b : 0.02	
g : 0.23	= : 0.14	e : 0.12	c : 0.10	i : 0.08	h : 0.08	] : 0.06	d : 0.06	f : 0.04	2 : 0.04	F : 0.02	a : 0.02	
g : 0.25	= : 0.12	e : 0.10	c : 0.08	h : 0.08	] : 0.06	i : 0.06	d : 0.06	f : 0.04	F : 0.02	3 : 0.02	2 : 0.02	5 : 0.02	4 : 0.02	b : 0.02	: : 0.02	

#score	574.075369274076
#seq	50
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_transcript_m3_run2.txt

#BEAR
JJJJJJJJJJZZZA}BBZ	chr9:37080121-37080415(+)$1	294	232	250	14.5373
CIIIIIIIII{EEEEEcc	chr16:75299276-75299548(-)$1	272	9	27	12.5352
IIIIIIIII}CCCCCCYY	chr21:46708009-46708265(+)$1	256	124	142	13.6023
IIIIIIIII}A}EEEEEY	chr17:59475882-59476144(-)$1	262	235	253	15.4576
JJJJJJJJJJJ}CCCYYJ	chr20:60935872-60936190(-)$1	318	259	277	16.0405
JJJJJJJJJJJ}BBYYGG	chr11:59382735-59382988(-)$1	253	229	247	15.4584
}JJJJJJJJJJ}CCCZZZ	chr19:1408215-1408476(+)$1	261	156	174	15.4954
JJJJJJJJJJ{EEEEEBB	chr17:48547936-48548208(+)$1	272	5	23	15.3036
IIIIIIIIIYYFFFFFFY	chr9:136759037-136759290(-)$1	253	173	191	12.6042
JJJJJJJJJJJJJJJJJJ	chr13:113863277-113863581(+)$1	304	50	68	13.5712
JJJJJJJJJJJCCCFFFF	chr17:75415996-75416249(+)$1	253	27	45	15.2835
JJJJJJJJJJJJJYYGGG	chr9:137225243-137225503(+)$1	260	202	220	14.1233
JJJJJJJJJJJ}EEEEE}	chr3:128211701-128211981(+)$1	280	214	232	17.2546
JJJJJJJJJJJZZZCCCC	chr12:124873017-124873332(-)$1	315	241	259	15.0262
JJJJJJJJJJJ?????A}	chr12:93835250-93835512(-)$1	262	174	192	13.8722
}JJJJJJJJJJJEEEEE?	chr14:99990194-99990451(-)$1	257	218	236	15.7962
JJJJJJJJJJJ}EEEEEZ	chrX:9433772-9434082(+)$1	310	241	259	16.9773
CCIIIIIIIII}DDDD:f	chr2:73510664-73510903(-)$1	239	119	137	12.0658
IIIIIIII}BB}DDDDYY	chr6:139013972-139014258(+)$1	286	179	197	13.3808
~~IIIIIIIII}CCCYYD	chr22:24985592-24985880(-)$1	288	167	185	13.4688
IIIIIIIII{BBEEEEE:	chr2:242642389-242642668(+)$1	279	50	68	13.8085
JJJJJJJJJJJ}FFFFFF	chr6:3751177-3751441(-)$1	264	235	253	15.9307
JJJJJJJJJJ}BBEEEEE	chr8:28243138-28243399(-)$1	261	190	208	15.8108
JJJJJJJJJJJJ}DDDD}	chr14:69618227-69618469(-)$1	242	172	190	15.6006
}JJJJJJJJJJJJFFFFF	chr10:120863974-120864279(+)$1	305	286	304	15.0253
JJJJJJJJJJJ}A}BB::	chr12:70637389-70637667(+)$1	278	256	274	15.2494
}IIIIIIIIIYYEEEEEY	chr2:178128761-178129029(-)$1	268	230	248	14.9958
:JJJJJJJJJJ}HHHHHH	chr12:49453134-49453444(-)$1	310	280	298	12.9083
JJJJJJJJJJJJJCCC__	chr7:29352688-29352988(+)$1	300	242	260	14.6565
JJJJJJJJJJJ}BB}DDD	chr14:19888512-19888803(-)$1	291	144	162	15.7060
JJJJJJJJJJJJJEEEEE	chr17:27717278-27717516(+)$1	238	109	127	16.1039
JJJJJJJJJJYYEEEEE}	chr2:36583869-36584128(+)$1	259	200	218	15.8928
JJJJJJJJJJJ}EEEEEf	chr16:1422273-1422538(-)$1	265	141	159	15.8776
JJJJJJJJJJ{DDDD{Ab	chr13:92000948-92001237(+)$1	289	28	46	12.8769
::IIIIIIIII}CCCZZZ	chr19:50189997-50190271(+)$1	274	241	259	12.2670
JJJJJJJJJJJ:::EEEE	chr20:17662316-17662544(-)$1	228	7	25	14.6600
JJJJJJJJJJJJJJ::::	chr2:74215167-74215420(+)$1	253	168	186	13.1984
JJJJJJJJJJYYDDDDYY	chr17:79363877-79364125(-)$1	248	212	230	14.8755
::IIIIIIIII}BB}BBG	chr1:1555121-1555393(+)$1	272	231	249	12.2120
JJJJJJJJJJJ::EEEEE	chr1:2173315-2173587(+)$1	272	192	210	15.3109
C}IIIIIIIII}DDDD}B	chr19:1224608-1224879(+)$1	271	85	103	14.3017
HHHHHFFFFFF}EEEEE}	chr6:139014258-139014530(+)$1	272	238	256	10.9479
:IIIIIIIIIDDDD}BB}	chr21:38740428-38740709(+)$1	281	228	246	12.5574
JJJJJJJJJKKCCCEEEE	chr9:139781588-139781853(+)$1	265	2	20	14.1118
JJJJJJJJJJJJHHHHHH	chr6:7542324-7542597(+)$1	273	222	240	13.4845
IIIIIII}CCC}EEEEE:	chr16:50635842-50636095(+)$1	253	214	232	12.4614
JJJJJJJJJJJJ:CCCCC	chr14:102786150-102786414(+)$1	264	110	128	14.7214
:JJJJJJJJJJ:FFFFFF	chr3:195622227-195622533(-)$1	306	112	130	13.5688
}JJJJJJJJJJ?????EE	chr14:105933318-105933617(+)$1	299	149	167	13.6661
B}IIIIIIIII}CCCDDD	chr14:32546353-32546620(+)$1	267	228	246	14.0298
JJJJJJJJJJJJJ}ACCC	chr19:2231956-2232235(+)$1	279	163	181	14.9488
ZZIIIIIIIII:EEEEE:	chr4:6912267-6912529(+)$1	262	114	132	12.8745
EJJJJJJJJJJ}DDDDff	chr1:90287275-90287499(+)$1	224	136	154	12.8951
BJJJJJJJJJJ::EEEEE	chr8:101963731-101964001(-)$1	270	19	37	14.6602

#otherMatches

#Seq PSSM
GGGAAGCCAGUCAGUGAA	chr9:37080121-37080415(+)$1	294	232	250	14.5373
CCCCGCCUUUCCAUCCUC	chr16:75299276-75299548(-)$1	272	9	27	12.5352
GUGGACCCUGCAGGCCAG	chr21:46708009-46708265(+)$1	256	124	142	13.6023
AGGCUGAUUCCUGAAGGU	chr17:59475882-59476144(-)$1	262	235	253	15.4576
CUCUCUCGGCCUCGGUGC	chr20:60935872-60936190(-)$1	318	259	277	16.0405
CGCUGUCGCUCACCUUGC	chr11:59382735-59382988(-)$1	253	229	247	15.4584
UGGCCAGGGGGACCCCAA	chr19:1408215-1408476(+)$1	261	156	174	15.4954
GGCAGGCUGGCUUUCUCA	chr17:48547936-48548208(+)$1	272	5	23	15.3036
cugucuuccuucuccccg	chr9:136759037-136759290(-)$1	253	173	191	12.6042
AGGGCCUCGGGGCGCGCG	chr13:113863277-113863581(+)$1	304	50	68	13.5712
GGGGGGCAUGGCUGGGGA	chr17:75415996-75416249(+)$1	253	27	45	15.2835
CCCCGGGUGCGGCCGCCG	chr9:137225243-137225503(+)$1	260	202	220	14.1233
UGUCCGCCUGGUGGGCGA	chr3:128211701-128211981(+)$1	280	214	232	17.2546
AUCCUUUCCCCCAUGCCC	chr12:124873017-124873332(-)$1	315	241	259	15.0262
UGGGGGUCUCUGGGCUUG	chr12:93835250-93835512(-)$1	262	174	192	13.8722
GGGCCGUGAGUGCCUCUA	chr14:99990194-99990451(-)$1	257	218	236	15.7962
GGCGGGCGAGGUGGCGCG	chrX:9433772-9434082(+)$1	310	241	259	16.9773
AGUGCCUGUACUGGUGAC	chr2:73510664-73510903(-)$1	239	119	137	12.0658
GGCGUUCCUCCACCCGCA	chr6:139013972-139014258(+)$1	286	179	197	13.3808
cugggaggcuagguccuu	chr22:24985592-24985880(-)$1	288	167	185	13.4688
CCCUAGAGGGACGCCCGA	chr2:242642389-242642668(+)$1	279	50	68	13.8085
CGGGGGCGCCCGGGGCUG	chr6:3751177-3751441(-)$1	264	235	253	15.9307
ccccggcccuuuccggcg	chr8:28243138-28243399(-)$1	261	190	208	15.8108
GGGCGUUCCUGCUUGGCU	chr14:69618227-69618469(-)$1	242	172	190	15.6006
auugucuccuuuuagcuc	chr10:120863974-120864279(+)$1	305	286	304	15.0253
CCGCUGCCGCCGCGCUGC	chr12:70637389-70637667(+)$1	278	256	274	15.2494
GGGGCCGCUCUCGGGGGA	chr2:178128761-178129029(-)$1	268	230	248	14.9958
AGUUUGGGAACCUGGCCA	chr12:49453134-49453444(-)$1	310	280	298	12.9083
AGGAGGACUGGGGGAGAA	chr7:29352688-29352988(+)$1	300	242	260	14.6565
GGUGUGGGCUCAGGCGCC	chr14:19888512-19888803(-)$1	291	144	162	15.7060
GGCCGGGCUCUGUGGCUU	chr17:27717278-27717516(+)$1	238	109	127	16.1039
GGCCUUGCUCCCCGAGGU	chr2:36583869-36584128(+)$1	259	200	218	15.8928
GGGUCCUUCCCACUCAGU	chr16:1422273-1422538(-)$1	265	141	159	15.8776
GAGUGUGGCGCGGGAGGG	chr13:92000948-92001237(+)$1	289	28	46	12.8769
AACCCUGCCCUCCUGGUG	chr19:50189997-50190271(+)$1	274	241	259	12.2670
gccgccgcggccgUGCAC	chr20:17662316-17662544(-)$1	228	7	25	14.6600
GAAGCGGGGGAGGCUUUA	chr2:74215167-74215420(+)$1	253	168	186	13.1984
AGGUUGGGGGUGUGGGAA	chr17:79363877-79364125(-)$1	248	212	230	14.8755
AUGGCCUUGGCACUCCAC	chr1:1555121-1555393(+)$1	272	231	249	12.2120
GAGGCAGCAGGCCAGGAG	chr1:2173315-2173587(+)$1	272	192	210	15.3109
UGCCUGGGAGGAGAGCAG	chr19:1224608-1224879(+)$1	271	85	103	14.3017
GGUGCGGGCGCACAGUCC	chr6:139014258-139014530(+)$1	272	238	256	10.9479
ACUCUCGCUUCGGAGCCA	chr21:38740428-38740709(+)$1	281	228	246	12.5574
CUGGCUGCUGGGAGGGUC	chr9:139781588-139781853(+)$1	265	2	20	14.1118
UCCCGCGAGCCCGGGCGG	chr6:7542324-7542597(+)$1	273	222	240	13.4845
GCCUGGGAAUGAGAGGGA	chr16:50635842-50636095(+)$1	253	214	232	12.4614
gccgccgccgccgccccc	chr14:102786150-102786414(+)$1	264	110	128	14.7214
ACGGAGCUGGGACGGGCU	chr3:195622227-195622533(-)$1	306	112	130	13.5688
UCGGGGGUGUCUGUGUGG	chr14:105933318-105933617(+)$1	299	149	167	13.6661
cgccgccaccgccggggc	chr14:32546353-32546620(+)$1	267	228	246	14.0298
CCGUGGGCAGCUGGCGGG	chr19:2231956-2232235(+)$1	279	163	181	14.9488
GGUUGCGGUCCUGAUGGG	chr4:6912267-6912529(+)$1	262	114	132	12.8745
UGGGAGGGAGCUGGGGGC	chr1:90287275-90287499(+)$1	224	136	154	12.8951
GGGAGGGCGGCUAGCGGC	chr8:101963731-101964001(-)$1	270	19	37	14.6602

#DB
))))))))))...).)).	chr9:37080121-37080415(+)$1	1	232	250	14.5373
((((((((((.(((((((	chr16:75299276-75299548(-)$1	1	9	27	12.5352
))))))))).))))))..	chr21:46708009-46708265(+)$1	1	124	142	13.6023
))))))))).).))))).	chr17:59475882-59476144(-)$1	1	235	253	15.4576
))))))))))).)))..)	chr20:60935872-60936190(-)$1	1	259	277	16.0405
))))))))))).))..))	chr11:59382735-59382988(-)$1	1	229	247	15.4584
.)))))))))).)))...	chr19:1408215-1408476(+)$1	1	156	174	15.4954
((((((((((.(((((((	chr17:48547936-48548208(+)$1	1	5	23	15.3036
)))))))))..)))))).	chr9:136759037-136759290(-)$1	1	173	191	12.6042
((((((((((((((((((	chr13:113863277-113863581(+)$1	1	50	68	13.5712
((((((((((((((((((	chr17:75415996-75416249(+)$1	1	27	45	15.2835
)))))))))))))..)))	chr9:137225243-137225503(+)$1	1	202	220	14.1233
))))))))))).))))).	chr3:128211701-128211981(+)$1	1	214	232	17.2546
)))))))))))...))))	chr12:124873017-124873332(-)$1	1	241	259	15.0262
))))))))))).....).	chr12:93835250-93835512(-)$1	1	174	192	13.8722
.)))))))))))))))).	chr14:99990194-99990451(-)$1	1	218	236	15.7962
))))))))))).))))).	chrX:9433772-9434082(+)$1	1	241	259	16.9773
))))))))))).)))).(	chr2:73510664-73510903(-)$1	1	119	137	12.0658
)))))))).)).))))..	chr6:139013972-139014258(+)$1	1	179	197	13.3808
..))))))))).)))..)	chr22:24985592-24985880(-)$1	1	167	185	13.4688
(((((((((.(((((((.	chr2:242642389-242642668(+)$1	1	50	68	13.8085
))))))))))).))))))	chr6:3751177-3751441(-)$1	1	235	253	15.9307
)))))))))).)))))))	chr8:28243138-28243399(-)$1	1	190	208	15.8108
)))))))))))).)))).	chr14:69618227-69618469(-)$1	1	172	190	15.6006
.)))))))))))))))))	chr10:120863974-120864279(+)$1	1	286	304	15.0253
))))))))))).).))..	chr12:70637389-70637667(+)$1	1	256	274	15.2494
.)))))))))..))))).	chr2:178128761-178129029(-)$1	1	230	248	14.9958
.)))))))))).))))))	chr12:49453134-49453444(-)$1	1	280	298	12.9083
))))))))))))))))..	chr7:29352688-29352988(+)$1	1	242	260	14.6565
))))))))))).)).)))	chr14:19888512-19888803(-)$1	1	144	162	15.7060
)))))))))))))(((((	chr17:27717278-27717516(+)$1	1	109	127	16.1039
))))))))))..))))).	chr2:36583869-36584128(+)$1	1	200	218	15.8928
))))))))))).)))))(	chr16:1422273-1422538(-)$1	1	141	159	15.8776
((((((((((.((((.((	chr13:92000948-92001237(+)$1	1	28	46	12.8769
..))))))))).)))...	chr19:50189997-50190271(+)$1	1	241	259	12.2670
(((((((((((...((((	chr20:17662316-17662544(-)$1	1	7	25	14.6600
))))))))))))))....	chr2:74215167-74215420(+)$1	1	168	186	13.1984
))))))))))..))))..	chr17:79363877-79364125(-)$1	1	212	230	14.8755
..))))))))).)).)))	chr1:1555121-1555393(+)$1	1	231	249	12.2120
)))))))))))..(((((	chr1:2173315-2173587(+)$1	1	192	210	15.3109
).))))))))).)))).)	chr19:1224608-1224879(+)$1	1	85	103	14.3017
))))))))))).))))).	chr6:139014258-139014530(+)$1	1	238	256	10.9479
.))))))))))))).)).	chr21:38740428-38740709(+)$1	1	228	246	12.5574
(((((((((..(((((((	chr9:139781588-139781853(+)$1	1	2	20	14.1118
))))))))))))))))))	chr6:7542324-7542597(+)$1	1	222	240	13.4845
))))))).))).))))).	chr16:50635842-50636095(+)$1	1	214	232	12.4614
)))))))))))).(((((	chr14:102786150-102786414(+)$1	1	110	128	14.7214
.)))))))))).((((((	chr3:195622227-195622533(-)$1	1	112	130	13.5688
.)))))))))).....))	chr14:105933318-105933617(+)$1	1	149	167	13.6661
).))))))))).))))))	chr14:32546353-32546620(+)$1	1	228	246	14.0298
))))))))))))).)(((	chr19:2231956-2232235(+)$1	1	163	181	14.9488
..))))))))).(((((.	chr4:6912267-6912529(+)$1	1	114	132	12.8745
))))))))))).))))((	chr1:90287275-90287499(+)$1	1	136	154	12.8951
(((((((((((..(((((	chr8:101963731-101964001(-)$1	1	19	37	14.6602

#PSSM
J : 0.53	I : 0.11	} : 0.09	: : 0.09	C : 0.05	B : 0.03	~ : 0.01	H : 0.01	Z : 0.01	E : 0.01	
J : 0.68	I : 0.16	: : 0.03	} : 0.03	C : 0.01	~ : 0.01	H : 0.01	Z : 0.01	
J : 0.68	I : 0.29	H : 0.01	
J : 0.68	I : 0.29	H : 0.01	
J : 0.68	I : 0.29	H : 0.01	
J : 0.68	I : 0.29	F : 0.01	
J : 0.68	I : 0.29	F : 0.01	
J : 0.68	I : 0.27	F : 0.01	} : 0.01	
J : 0.68	I : 0.25	} : 0.01	F : 0.01	C : 0.01	
J : 0.66	I : 0.18	} : 0.03	Y : 0.01	B : 0.01	{ : 0.01	F : 0.01	K : 0.01	C : 0.01	
J : 0.55	I : 0.12	Y : 0.07	{ : 0.05	C : 0.03	B : 0.03	Z : 0.01	A : 0.01	} : 0.01	F : 0.01	D : 0.01	K : 0.01	
} : 0.38	J : 0.20	: : 0.09	C : 0.05	Y : 0.05	Z : 0.03	E : 0.03	? : 0.03	B : 0.03	D : 0.03	F : 0.01	
E : 0.24	C : 0.14	J : 0.12	D : 0.12	B : 0.07	: : 0.07	F : 0.05	Z : 0.03	? : 0.03	H : 0.03	} : 0.01	A : 0.01	
E : 0.31	C : 0.18	D : 0.14	F : 0.07	B : 0.05	J : 0.03	? : 0.03	} : 0.03	H : 0.03	A : 0.01	Y : 0.01	Z : 0.01	: : 0.01	
E : 0.35	C : 0.16	D : 0.12	F : 0.09	} : 0.07	Y : 0.03	? : 0.03	H : 0.03	J : 0.01	B : 0.01	: : 0.01	A : 0.01	
E : 0.35	D : 0.14	C : 0.09	F : 0.09	B : 0.07	Y : 0.05	Z : 0.03	? : 0.03	H : 0.03	J : 0.01	G : 0.01	{ : 0.01	: : 0.01	
E : 0.33	Y : 0.09	F : 0.09	B : 0.07	C : 0.05	: : 0.05	D : 0.05	G : 0.03	Z : 0.03	A : 0.03	H : 0.03	c : 0.01	J : 0.01	_ : 0.01	} : 0.01	f : 0.01	
E : 0.12	Y : 0.11	} : 0.11	: : 0.09	Z : 0.07	F : 0.07	G : 0.05	C : 0.05	f : 0.05	D : 0.05	J : 0.03	B : 0.03	H : 0.03	c : 0.01	? : 0.01	_ : 0.01	b : 0.01	

#score	774.0533959503828
#seq	54
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_UTR_m3_run2.txt

#BEAR
###dddd"""bbnnnnnbb333dddd	chr1:22108363-22108618(-)$1	255	153	179	12.5941
dddd!!ddddbbnnnnnbb]dddd]d	chr7:129710288-129710649(+)$1	361	166	192	11.8978
[ffffffcccbbnnnnnbb]ccc22f	chr12:123351105-123351353(-)$1	248	133	159	12.2877
ggggeeeeecccnnnnnccc]eeeee	chr9:140446270-140446533(+)$1	263	128	154	13.5989
c[bbccc[bb[annnnna]bb]ccc]	chr2:242255335-242255606(+)$1	271	4	30	11.1971
g####gggggggnnnnnggggggggg	chr17:80678661-80678985(+)$1	324	33	59	12.9292
dd[bb[a[ddddnnnnndddd]abbd	chr11:10829884-10830123(-)$1	239	157	183	11.2540
[dddd####cccnnnnnccc22dddd	chr6:2960082-2960357(-)$1	275	73	99	12.5353
cc[bb####cccnnnnnccc4444bb	chr19:54970319-54970534(+)$1	215	149	175	12.7223
ffffffffffffnnnnnffffff>>>	chr4:1386557-1386815(+)$1	258	159	185	11.0707
fff[a[ffffffnnnnnffffff]a]	chr1:228582201-228582437(-)$1	236	120	146	12.1464
!!eeeee!!cccnnnnnccc22eeee	chr7:923755-924006(+)$1	251	46	72	13.6375
ddddffffffbbnnnnnbb]ffffff	chr1:109935627-109935893(-)$1	266	164	190	12.0664
!!dddd[eeeeennnnneeeee]ddd	chr2:11917324-11917624(+)$1	300	178	204	12.0759
:eeeee[eeeeennnnneeeee4444	chr8:145634449-145634682(-)$1	233	134	160	11.6429
bggggggg[cccnnnnnccc]ggggg	chr16:57219489-57219756(-)$1	267	1	27	13.8007
gggg!!a"""bbnnnnnbb333a22g	chr14:70234468-70234783(+)$1	315	187	213	13.4856
c:ggggggg[bbnnnnnbb]gggggg	chr2:131806264-131806510(-)$1	246	127	153	12.6183
[ddddddddcccnnnnnccc22dddd	chr19:59055724-59055964(+)$1	240	188	214	12.0351
e!!eeeeecccooooooccc]eeeee	chr1:78224879-78225172(-)$1	293	194	220	8.6545
b[bb!!ffffffnnnnnffffff]bb	chr6:170123880-170124234(-)$1	354	28	54	11.5673
ee[eeeeeddddnnnnndddd]eeee	chr1:225614979-225615249(-)$1	270	14	40	12.0952
dddd[dddd[bbnnnnnbbdddd]dd	chr19:8551017-8551241(+)$1	224	40	66	11.7302
:===========nnnnn=========	chr5:138630510-138630773(+)$1	263	3	29	13.0241
d]aiiiiiiiiinnnnniiiiiiiii	chr2:85766841-85767102(+)$1	261	84	110	12.6443
ccc:a[ffffffnnnnnffffff]a:	chr17:29632205-29632464(+)$1	259	25	51	10.5232
iiiccc[eeeeennnnneeeee]ccc	chr20:30947379-30947703(+)$1	324	173	199	12.4854
GGGbbgggggggnnnnnggggggg22	chr2:74691996-74692401(-)$1	405	293	319	10.8658
ffbb[gggggggnnnnnggggggg22	chr12:121124959-121125217(+)$1	258	149	175	12.1563
ccc[a[ccc[bbnnnnnbb]ccc]a]	chr2:61763376-61763648(-)$1	272	238	264	13.1379
hhhheeeee[bbnnnnnbb]eeeee:	chr1:20236518-20236751(+)$1	233	112	138	11.7137
:eeeee[eeeeennnnneeeeeeeee	chr3:49130584-49131044(-)$1	460	337	363	11.6835
""eeeee[ddddnnnnndddd]eeee	chr22:20067951-20068238(+)$1	287	139	165	12.1609
cc[ccc[eeeeennnnneeeeeccc]	chr17:48796911-48797138(+)$1	227	12	38	12.6542
e!!ffffff[bbnnnnnbb]ffffff	chr1:20235811-20236057(+)$1	246	73	99	12.6347
ee!!ccc[ddddnnnnnddddccc]e	chr8:102217173-102217443(-)$1	270	32	58	11.9228
iiibbccc!!bbnnnnnbb22cccFF	chr3:196304350-196304621(+)$1	271	217	243	11.6950
:eeeee[eeeeennnnneeeee4444	chr8:145634482-145634756(-)$1	274	208	234	11.6429
dd$$$$$eeeeennnnneeeeedddd	chr11:940593-940835(+)$1	242	26	52	10.8034
$$ffffff[cccnnnnnccc333fff	chr5:137089641-137089900(-)$1	259	188	214	12.9636
ddd!!eeeee[annnnna]eeeeedd	chr17:74261444-74261704(+)$1	260	172	198	12.5512
dddd[a!!ddddnnnnndddd22a]d	chr12:77158274-77158551(+)$1	277	242	268	11.5489
c!!a[eeeeebbnnnnnbb]eeeee]	chr22:19419016-19419285(-)$1	269	35	61	13.5946
hhhhhhhh[cccnnnnnccc22hhhh	chr12:31477125-31477463(-)$1	338	25	51	11.3973
ggggggg!!cccnnnnnccc333ggg	chr22:39130845-39131156(-)$1	311	235	261	14.2530
bb[iiiiiiiiinnnnniiiiiiiii	chr16:1413501-1413765(-)$1	264	14	40	12.7992
[ffffffcccbbnnnnnbb]ccc]ff	chr19:8550507-8550791(+)$1	284	221	247	12.5382
HHHeeeee[cccnnnnnccc]eeeee	chr1:247095084-247095344(-)$1	260	189	215	11.7276
========[cccnnnnnccc======	chr5:138630292-138630534(+)$1	242	17	43	14.0979
::ffffff"""annnnna333fffff	chr11:66408200-66408453(+)$1	253	168	194	10.8269
dddabbffffffnnnnnffffff22b	chr19:798378-798686(+)$1	308	261	287	10.9461
cc[bb####cccnnnnnccc4444bb	chr19:54970398-54970664(+)$1	266	70	96	12.7223
:ccc[eeeee[annnnna]eeeeecc	chr11:236034-236360(-)$1	326	189	215	12.0577
eee[eeeee[bbnnnnnbbeeeeeee	chr21:46686799-46687055(-)$1	256	40	66	12.9298
bggggggg[cccnnnnnccc22gggg	chr4:39979247-39979498(-)$1	251	13	39	13.6823
hggggggg[cccnnnnnccc]ggggg	chr16:57219629-57219896(-)$1	267	141	167	13.7547

#otherMatches

#Seq PSSM
GGAGCUUAAAGUCUAGUAUGAGAAGU	chr1:22108363-22108618(-)$1	255	153	179	12.5941
GACCGGGCUGCGGCAAUCGUUAGCGG	chr7:129710288-129710649(+)$1	361	166	192	11.8978
GCCGGCCGGCCUGGAAGAGCGCCGUG	chr12:123351105-123351353(-)$1	248	133	159	12.2877
CGCUUGGAGCUCGUGUGGGGUCUCCG	chr9:140446270-140446533(+)$1	263	128	154	13.5989
AGCGCUGGGCGGGUCCGCGGCGCGGU	chr2:242255335-242255606(+)$1	271	4	30	11.1971
GGAAUCCGUGUGCAGCCCACAUGGUA	chr17:80678661-80678985(+)$1	324	33	59	12.9292
CGGCUGUGCUCGGACGGCGAGGGAGC	chr11:10829884-10830123(-)$1	239	157	183	11.2540
GCACCCACAGCCCAUGAGGCAAGGUG	chr6:2960082-2960357(-)$1	275	73	99	12.5353
GUGGAGAAAUUCUGGUCGAAGAGGUU	chr19:54970319-54970534(+)$1	215	149	175	12.7223
ugcugacacacaguugauguguggug	chr4:1386557-1386815(+)$1	258	159	185	11.0707
AGUGUGUCCUUUGAGCAAGAGGAGGA	chr1:228582201-228582437(-)$1	236	120	146	12.1464
AAAGCAGAAGCUGGUGUGGUGCUUGC	chr7:923755-924006(+)$1	251	46	72	13.6375
GAGGCUUCAGGGAGCUGCCGCUGAAG	chr1:109935627-109935893(-)$1	266	164	190	12.0664
UCCUUAUGCGUGAGUUGCACGCCUGA	chr2:11917324-11917624(+)$1	300	178	204	12.0759
GGCGCCAUGUACGCCGUGUACAAACA	chr8:145634449-145634682(-)$1	233	134	160	11.6429
UCUCGCCUCCCGCGCGCCGGUAGGUG	chr16:57219489-57219756(-)$1	267	1	27	13.8007
CAGUAGCGGACCGUGUUGGGAGGGAG	chr14:70234468-70234783(+)$1	315	187	213	13.4856
CCUCCUCUCUGGUGCUUUCUGAGAGG	chr2:131806264-131806510(-)$1	246	127	153	12.6183
GCGGCGCCUUCGGGAGGCGAGCAGGC	chr19:59055724-59055964(+)$1	240	188	214	12.0351
UGCCAGUCCCUCUCAGUGGGUGACUG	chr1:78224879-78225172(-)$1	293	194	220	8.6545
uggcgggccgcggggcgcgcggcggc	chr6:170123880-170124234(-)$1	354	28	54	11.5673
CGGUCCUGCAGUAGGAGGCUGACAGG	chr1:225614979-225615249(-)$1	270	14	40	12.0952
GCGCAUGGGUGCCAACAGCCUCGAGC	chr19:8551017-8551241(+)$1	224	40	66	11.7302
UGGAUGAAUAUCCCCUAGGUGUUUAU	chr5:138630510-138630773(+)$1	263	3	29	13.0241
GCGACCACGUGUUUGCCGCAUGUGGU	chr2:85766841-85767102(+)$1	261	84	110	12.6443
UACGGGCAGAUGGUAGUUGUCUGGCA	chr17:29632205-29632464(+)$1	259	25	51	10.5232
GGGGUUGUGAAUUUUGUGUUCAGAGC	chr20:30947379-30947703(+)$1	324	173	199	12.4854
CGUGGCCCCGGACCUCUUCUGGGGAA	chr2:74691996-74692401(-)$1	405	293	319	10.8658
GCCUGGGCGGUUGAGGGAACCGCUGU	chr12:121124959-121125217(+)$1	258	149	175	12.1563
GAUUUGGGGGACUAAAUGUGCUUGGC	chr2:61763376-61763648(-)$1	272	238	264	13.1379
GAGGCCCAGUAUGUCUAGUCCUGGGA	chr1:20236518-20236751(+)$1	233	112	138	11.7137
UGCCGUUACUUGAGGCCCAAGUACGG	chr3:49130584-49131044(-)$1	460	337	363	11.6835
cggggcuggggggcgggccccgggcc	chr22:20067951-20068238(+)$1	287	139	165	12.1609
GCACGGCAUGCUGGGAAGGCGUCCGC	chr17:48796911-48797138(+)$1	227	12	38	12.6542
AUUAAAAAAAGUACACAGCAUUUUUU	chr1:20235811-20236057(+)$1	246	73	99	12.6347
GGUCAGCUGCCAGAGUGUGGCGCUCC	chr8:102217173-102217443(-)$1	270	32	58	11.9228
UGCUGGGCAGUGAUGACCAGAGCUGG	chr3:196304350-196304621(+)$1	271	217	243	11.6950
GGCGCCAUGUACGCCGUGUACAAACA	chr8:145634482-145634756(-)$1	274	208	234	11.6429
ucuguguaaagguguuuccuuuggcg	chr11:940593-940835(+)$1	242	26	52	10.8034
AUGUGCAGACGAGUGAGUCGGGCCUG	chr5:137089641-137089900(-)$1	259	188	214	12.9636
CAGGUCAUGAUCAACCAGUUCGUGCU	chr17:74261444-74261704(+)$1	260	172	198	12.5512
UGAAUGACGGUAUCUAUUGCUUCCUU	chr12:77158274-77158551(+)$1	277	242	268	11.5489
CGGGAGCCGCCUGAGGAGGAgcggcg	chr22:19419016-19419285(-)$1	269	35	61	13.5946
CUUGUGCGAGGUGCCAUGCUGGUGCG	chr12:31477125-31477463(-)$1	338	25	51	11.3973
AGCCUCAAAUCCGCUCUGGAGCAUGA	chr22:39130845-39131156(-)$1	311	235	261	14.2530
AGAUCCUGGGGCUGUGUGCCCUGGGG	chr16:1413501-1413765(-)$1	264	14	40	12.7992
GGCCAGACCAUGGAGCGCAUUGGCUC	chr19:8550507-8550791(+)$1	284	221	247	12.5382
GAGCAGCGACUGCGUUUUAGCCGCUG	chr1:247095084-247095344(-)$1	260	189	215	11.7276
GUGAUUUGCACUUGUUUAGUCAAGUC	chr5:138630292-138630534(+)$1	242	17	43	14.0979
cccagcauuuugaaugccuacauguu	chr11:66408200-66408453(+)$1	253	168	194	10.8269
GAGGCCCGGAGGCUGCCCUUCCGACG	chr19:798378-798686(+)$1	308	261	287	10.9461
GUGGAGAAAUUCUGGUCGAAGAGGUU	chr19:54970398-54970664(+)$1	266	70	96	12.7223
GCCAUGGGGCCCGCGGUGAGCCCUUG	chr11:236034-236360(-)$1	326	189	215	12.0577
UUGUGGGGCUGCCGUGAGCGUCCCCG	chr21:46686799-46687055(-)$1	256	40	66	12.9298
CCCCGGCUCCCGGGGCACGGACGGCC	chr4:39979247-39979498(-)$1	251	13	39	13.6823
UCUCGCCUCCCGCGCGCCGGUAGGUG	chr16:57219629-57219896(-)$1	267	141	167	13.7547

#DB
...((((...((.....))...))))	chr1:22108363-22108618(-)$1	1	153	179	12.5941
((((..((((((.....)).)))).)	chr7:129710288-129710649(+)$1	1	166	192	11.8978
.(((((((((((.....)).)))..)	chr12:123351105-123351353(-)$1	1	133	159	12.2877
))))((((((((.....))).)))))	chr9:140446270-140446533(+)$1	1	128	154	13.5989
(.(((((.((.(.....).)).))).	chr2:242255335-242255606(+)$1	1	4	30	11.1971
(....(((((((.....)))))))))	chr17:80678661-80678985(+)$1	1	33	59	12.9292
((.((.(.((((.....)))).))))	chr11:10829884-10830123(-)$1	1	157	183	11.2540
.((((....(((.....)))..))))	chr6:2960082-2960357(-)$1	1	73	99	12.5353
((.((....(((.....)))....))	chr19:54970319-54970534(+)$1	1	149	175	12.7223
((((((((((((.....))))))...	chr4:1386557-1386815(+)$1	1	159	185	11.0707
(((.(.((((((.....)))))).).	chr1:228582201-228582437(-)$1	1	120	146	12.1464
..(((((..(((.....)))..))))	chr7:923755-924006(+)$1	1	46	72	13.6375
((((((((((((.....)).))))))	chr1:109935627-109935893(-)$1	1	164	190	12.0664
..((((.(((((.....))))).)))	chr2:11917324-11917624(+)$1	1	178	204	12.0759
.(((((.(((((.....)))))....	chr8:145634449-145634682(-)$1	1	134	160	11.6429
((((((((.(((.....))).)))))	chr16:57219489-57219756(-)$1	1	1	27	13.8007
((((..(...((.....))...)..)	chr14:70234468-70234783(+)$1	1	187	213	13.4856
).(((((((.((.....)).))))))	chr2:131806264-131806510(-)$1	1	127	153	12.6183
.(((((((((((.....)))..))))	chr19:59055724-59055964(+)$1	1	188	214	12.0351
(..((((((((......))).)))))	chr1:78224879-78225172(-)$1	1	194	220	8.6545
(.((..((((((.....)))))).))	chr6:170123880-170124234(-)$1	1	28	54	11.5673
((.(((((((((.....)))).))))	chr1:225614979-225615249(-)$1	1	14	40	12.0952
((((.((((.((.....)))))).))	chr19:8551017-8551241(+)$1	1	40	66	11.7302
.(((((((((((.....)))))))))	chr5:138630510-138630773(+)$1	1	3	29	13.0241
).)(((((((((.....)))))))))	chr2:85766841-85767102(+)$1	1	84	110	12.6443
))).(.((((((.....)))))).).	chr17:29632205-29632464(+)$1	1	25	51	10.5232
)))(((.(((((.....))))).)))	chr20:30947379-30947703(+)$1	1	173	199	12.4854
)))(((((((((.....)))))))..	chr2:74691996-74692401(-)$1	1	293	319	10.8658
((((.(((((((.....)))))))..	chr12:121124959-121125217(+)$1	1	149	175	12.1563
(((.(.(((.((.....)).))).).	chr2:61763376-61763648(-)$1	1	238	264	13.1379
))))(((((.((.....)).))))).	chr1:20236518-20236751(+)$1	1	112	138	11.7137
.(((((.(((((.....)))))))))	chr3:49130584-49131044(-)$1	1	337	363	11.6835
..(((((.((((.....)))).))))	chr22:20067951-20068238(+)$1	1	139	165	12.1609
((.(((.(((((.....)))))))).	chr17:48796911-48797138(+)$1	1	12	38	12.6542
(..((((((.((.....)).))))))	chr1:20235811-20236057(+)$1	1	73	99	12.6347
((..(((.((((.....))))))).)	chr8:102217173-102217443(-)$1	1	32	58	11.9228
)))))(((..((.....))..)))))	chr3:196304350-196304621(+)$1	1	217	243	11.6950
.(((((.(((((.....)))))....	chr8:145634482-145634756(-)$1	1	208	234	11.6429
((.....(((((.....)))))))))	chr11:940593-940835(+)$1	1	26	52	10.8034
..((((((.(((.....)))...)))	chr5:137089641-137089900(-)$1	1	188	214	12.9636
(((..(((((.(.....).)))))))	chr17:74261444-74261704(+)$1	1	172	198	12.5512
((((.(..((((.....))))..).)	chr12:77158274-77158551(+)$1	1	242	268	11.5489
(..(.(((((((.....)).))))).	chr22:19419016-19419285(-)$1	1	35	61	13.5946
((((((((.(((.....)))..))))	chr12:31477125-31477463(-)$1	1	25	51	11.3973
(((((((..(((.....)))...)))	chr22:39130845-39131156(-)$1	1	235	261	14.2530
((.(((((((((.....)))))))))	chr16:1413501-1413765(-)$1	1	14	40	12.7992
.(((((((((((.....)).))).))	chr19:8550507-8550791(+)$1	1	221	247	12.5382
)))(((((.(((.....))).)))))	chr1:247095084-247095344(-)$1	1	189	215	11.7276
((((((((.(((.....)))))))))	chr5:138630292-138630534(+)$1	1	17	43	14.0979
..((((((...(.....)...)))))	chr11:66408200-66408453(+)$1	1	168	194	10.8269
((((((((((((.....))))))..)	chr19:798378-798686(+)$1	1	261	287	10.9461
((.((....(((.....)))....))	chr19:54970398-54970664(+)$1	1	70	96	12.7223
.(((.(((((.(.....).)))))))	chr11:236034-236360(-)$1	1	189	215	12.0577
(((.(((((.((.....)))))))))	chr21:46686799-46687055(-)$1	1	40	66	12.9298
((((((((.(((.....)))..))))	chr4:39979247-39979498(-)$1	1	13	39	13.6823
((((((((.(((.....))).)))))	chr16:57219629-57219896(-)$1	1	141	167	13.7547

#PSSM
d : 0.16	c : 0.14	: : 0.10	e : 0.08	[ : 0.07	g : 0.07	b : 0.07	f : 0.05	h : 0.05	! : 0.03	i : 0.03	# : 0.01	G : 0.01	" : 0.01	$ : 0.01	H : 0.01	= : 0.01	
d : 0.17	g : 0.10	c : 0.10	e : 0.10	f : 0.08	! : 0.08	# : 0.03	[ : 0.03	: : 0.03	= : 0.03	i : 0.03	h : 0.03	] : 0.01	G : 0.01	" : 0.01	$ : 0.01	b : 0.01	H : 0.01	
d : 0.16	g : 0.12	f : 0.10	[ : 0.10	e : 0.10	! : 0.07	b : 0.05	c : 0.05	# : 0.03	= : 0.03	i : 0.03	h : 0.03	a : 0.01	G : 0.01	$ : 0.01	H : 0.01	
d : 0.14	b : 0.14	e : 0.14	g : 0.12	f : 0.10	[ : 0.05	c : 0.05	= : 0.03	i : 0.03	h : 0.03	! : 0.03	a : 0.03	# : 0.01	: : 0.01	$ : 0.01	
e : 0.19	f : 0.12	b : 0.10	g : 0.08	[ : 0.08	d : 0.07	! : 0.07	c : 0.07	a : 0.05	= : 0.03	i : 0.03	# : 0.01	$ : 0.01	h : 0.01	
e : 0.24	g : 0.14	f : 0.12	c : 0.08	d : 0.07	[ : 0.07	! : 0.05	# : 0.05	= : 0.03	i : 0.03	$ : 0.01	a : 0.01	h : 0.01	b : 0.01	
f : 0.19	e : 0.19	g : 0.14	[ : 0.10	d : 0.07	c : 0.07	# : 0.05	a : 0.03	= : 0.03	i : 0.03	$ : 0.01	! : 0.01	h : 0.01	
e : 0.28	f : 0.16	g : 0.12	c : 0.07	[ : 0.07	d : 0.05	# : 0.05	! : 0.05	" : 0.03	= : 0.03	i : 0.03	h : 0.01	
e : 0.23	d : 0.14	f : 0.12	[ : 0.12	c : 0.07	g : 0.07	" : 0.05	# : 0.05	! : 0.05	i : 0.03	b : 0.01	= : 0.01	
c : 0.30	e : 0.17	d : 0.10	f : 0.10	[ : 0.10	" : 0.05	g : 0.05	i : 0.03	b : 0.01	= : 0.01	! : 0.01	
c : 0.26	b : 0.24	e : 0.12	d : 0.08	f : 0.08	[ : 0.05	g : 0.05	i : 0.03	= : 0.01	" : 0.01	
b : 0.24	c : 0.24	e : 0.12	d : 0.08	f : 0.08	a : 0.07	g : 0.05	i : 0.03	o : 0.01	= : 0.01	
n : 0.98	o : 0.01	
n : 0.98	o : 0.01	
n : 0.98	o : 0.01	
n : 0.98	o : 0.01	
n : 0.98	o : 0.01	
c : 0.26	b : 0.24	e : 0.12	d : 0.08	f : 0.08	a : 0.07	g : 0.05	i : 0.03	= : 0.01	
c : 0.26	b : 0.24	e : 0.12	d : 0.08	f : 0.08	] : 0.05	g : 0.05	i : 0.03	= : 0.01	3 : 0.01	
c : 0.26	e : 0.17	] : 0.16	d : 0.10	f : 0.08	3 : 0.05	g : 0.05	i : 0.03	b : 0.01	= : 0.01	2 : 0.01	
e : 0.21	d : 0.12	f : 0.12	2 : 0.10	3 : 0.08	] : 0.08	g : 0.07	c : 0.05	4 : 0.03	= : 0.03	i : 0.03	b : 0.01	
e : 0.26	f : 0.14	g : 0.10	2 : 0.10	c : 0.08	3 : 0.07	] : 0.07	d : 0.03	4 : 0.03	= : 0.03	i : 0.03	
e : 0.21	f : 0.14	c : 0.12	g : 0.12	d : 0.10	4 : 0.07	a : 0.03	] : 0.03	= : 0.03	i : 0.03	3 : 0.03	2 : 0.01	h : 0.01	
e : 0.21	g : 0.14	d : 0.10	] : 0.10	c : 0.08	4 : 0.07	f : 0.07	2 : 0.05	= : 0.03	i : 0.03	b : 0.01	> : 0.01	a : 0.01	h : 0.01	
e : 0.17	d : 0.12	g : 0.10	2 : 0.08	f : 0.08	c : 0.07	b : 0.07	] : 0.05	a : 0.05	4 : 0.03	= : 0.03	i : 0.03	> : 0.01	F : 0.01	h : 0.01	
d : 0.17	e : 0.16	g : 0.12	f : 0.10	] : 0.08	b : 0.07	4 : 0.03	= : 0.03	i : 0.03	: : 0.03	c : 0.03	2 : 0.03	> : 0.01	F : 0.01	h : 0.01	

#score	685.7853273184019
#seq	56
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF756RYJ_AARS_transcript_m2_run2.txt

#BEAR
e[dddd[bb[cccooooooccc22bb]dd	chrM:14213-14422(-)$1	209	53	82	10.5079
gggggbb[cccooooooccc]bb]ggggg	chr19:893460-893689(+)$1	229	181	210	10.8085
bb####ccc[cccooooooccc]ccc444	chr11:65190364-65190611(+)$1	247	154	183	12.7393
c:==========nnnnn==========ff	chrM:14164-14374(-)$1	210	147	176	13.4109
ddd[ccc"""cccmmmmccc333cccddd	chr11:62622020-62622237(-)$1	217	60	89	10.9518
=========[cccmmmmccc]========	chrM:14366-14602(-)$1	236	103	132	14.2970
c####bb[a[bbnnnnnbb]a]bb]ccc2	chr3:128211660-128211918(+)$1	258	134	163	11.5179
!bb[bbgggggggmmmmggggggg]bb]b	chr19:2270126-2270396(+)$1	270	102	131	9.8580
!!===========oooooo==========	chr2:149639200-149639438(-)$1	238	124	153	15.2275
ggggiiiiiiiiimmmmiiiiiiiii333	chr5:137896639-137896867(-)$1	228	173	202	12.9613
c:==========nnnnn==========ff	chrM:14174-14397(-)$1	223	170	199	13.4109
c####a[ffffffnnnnnffffff]a333	chr11:93454755-93454985(+)$1	230	58	87	11.4958
c####bb[a[bbnnnnnbb]a]bb]ccc2	chr3:128211718-128211966(+)$1	248	76	105	11.5179
d$$$$$ccc[cccmmmmcccccc22dddd	chr9:100777607-100777855(+)$1	248	9	38	10.3975
c####a[ddddnnnnndddd]a333ccc2	chr5:134260103-134260386(+)$1	283	175	204	9.8992
c:==========nnnnn==========HH	chrM:14157-14364(-)$1	207	137	166	12.2729
=========[cccmmmmccc]========	chrM:14276-14505(-)$1	229	6	35	14.2970
a!!ffffff[cccoooooocccffffff]	chr19:34883331-34883588(+)$1	257	66	95	11.2647
%%===========mmmm===========3	chr11:65192395-65192685(+)$1	290	122	151	13.9973
e[dddd[bb[cccooooooccc22bb]dd	chrM:14222-14452(-)$1	230	83	112	10.5079
"""ggggggg[bbnnnnnbb]ggggggg3	chr16:2809968-2810248(+)$1	280	228	257	11.7393
hhhhggggggg[aooooooa]gggggggf	chr7:148638551-148638758(+)$1	207	99	128	10.8941
ggggg!!ffffffooooooffffff333g	chr2:97559879-97560127(-)$1	248	100	129	10.5129
%%===========mmmm===========3	chr11:65192485-65192764(+)$1	279	32	61	13.9973
ddd[ccc"""cccmmmmccc333cccddd	chr11:62622001-62622220(-)$1	219	43	72	10.9518

#otherMatches

#Seq PSSM
GGUGCUGUGGGUGAAAGAGUAUGAUGGGG	chrM:14213-14422(-)$1	209	53	82	10.5079
ggcuggaaugcaauggcgcgaucuuagcu	chr19:893460-893689(+)$1	229	181	210	10.8085
CUGCCUGGUGGAGGGGGAACUUGACCUCU	chr11:65190364-65190611(+)$1	247	154	183	12.7393
CGUUGAUUAGUAGUGGUUACUGGUUGAAC	chrM:14164-14374(-)$1	210	147	176	13.4109
UCACGUUACUGUCAGAUGAUUUGAAUUGA	chr11:62622020-62622237(-)$1	217	60	89	10.9518
AUUUAGGGGGAAUGAUGGUUGUCUUUGGA	chrM:14366-14602(-)$1	236	103	132	14.2970
UGGGAGCAGGGCGAGGUGCGCGGCAGGCG	chr3:128211660-128211918(+)$1	258	134	163	11.5179
GCGGGGUCGGCCUUGGGGGGCUGGUCCGC	chr19:2270126-2270396(+)$1	270	102	131	9.8580
ACCCUCUAAAUCACCACGAUGAUUUAGAG	chr2:149639200-149639438(-)$1	238	124	153	15.2275
UAGGAUUAUCUUGGACCUAAGAUAGUGAC	chr5:137896639-137896867(-)$1	228	173	202	12.9613
CGUUGAUUAGUAGUGGUUACUGGUUGAAC	chrM:14174-14397(-)$1	223	170	199	13.4109
AAUAAGGGCAUAUGUCUGgugugugugug	chr11:93454755-93454985(+)$1	230	58	87	11.4958
UGGGAGCAGGGCGAGGUGCGCGGCAGGCG	chr3:128211718-128211966(+)$1	248	76	105	11.5179
UCCUAAAGUCAAUUUUUGUUACUGUACag	chr9:100777607-100777855(+)$1	248	9	38	10.3975
CUGGUUGAACAUUGUUUGUUGGUGUGUAU	chr5:134260103-134260386(+)$1	283	175	204	9.8992
CGUUGAUUAGUAGUGGUUACUGGUUGAAC	chrM:14157-14364(-)$1	207	137	166	12.2729
AUUUAGGGGGAAUGAUGGUUGUCUUUGGA	chrM:14276-14505(-)$1	229	6	35	14.2970
GUAGGAUCUGUCCCUGGUAGGAGGGUCUG	chr19:34883331-34883588(+)$1	257	66	95	11.2647
GGGAAUUCUCUGGGGCUUUGGGGAAUUUA	chr11:65192395-65192685(+)$1	290	122	151	13.9973
GGUGCUGUGGGUGAAAGAGUAUGAUGGGG	chrM:14222-14452(-)$1	230	83	112	10.5079
GGGUUGUCCAGUUAGGAAAGGUGGAUGGG	chr16:2809968-2810248(+)$1	280	228	257	11.7393
agcuugcuguuuuGCACUAAUAACAGUAG	chr7:148638551-148638758(+)$1	207	99	128	10.8941
GGGAGCUGGGUAUGUUUGGGUACCCCUCC	chr2:97559879-97560127(-)$1	248	100	129	10.5129
GGGAAUUCUCUGGGGCUUUGGGGAAUUUA	chr11:65192485-65192764(+)$1	279	32	61	13.9973
UCACGUUACUGUCAGAUGAUUUGAAUUGA	chr11:62622001-62622220(-)$1	219	43	72	10.9518

#DB
(.((((.((.(((......)))..)).))	chrM:14213-14422(-)$1	1	53	82	10.5079
(((((((.(((......))).)).)))))	chr19:893460-893689(+)$1	1	181	210	10.8085
((....(((.(((......))).)))...	chr11:65190364-65190611(+)$1	1	154	183	12.7393
).((((((((((.....))))))))))((	chrM:14164-14374(-)$1	1	147	176	13.4109
(((.(((...(((....)))...))))))	chr11:62622020-62622237(-)$1	1	60	89	10.9518
(((((((((.(((....))).))))))))	chrM:14366-14602(-)$1	1	103	132	14.2970
(....((.(.((.....)).).)).))).	chr3:128211660-128211918(+)$1	1	134	163	11.5179
.((.(((((((((....))))))).)).)	chr19:2270126-2270396(+)$1	1	102	131	9.8580
..(((((((((((......))))))))))	chr2:149639200-149639438(-)$1	1	124	153	15.2275
(((((((((((((....)))))))))...	chr5:137896639-137896867(-)$1	1	173	202	12.9613
).((((((((((.....))))))))))((	chrM:14174-14397(-)$1	1	170	199	13.4109
(....(.((((((.....)))))).)...	chr11:93454755-93454985(+)$1	1	58	87	11.4958
(....((.(.((.....)).).)).))).	chr3:128211718-128211966(+)$1	1	76	105	11.5179
(.....(((.(((....))))))..))))	chr9:100777607-100777855(+)$1	1	9	38	10.3975
(....(.((((.....)))).)...))).	chr5:134260103-134260386(+)$1	1	175	204	9.8992
).((((((((((.....))))))))))))	chrM:14157-14364(-)$1	1	137	166	12.2729
(((((((((.(((....))).))))))))	chrM:14276-14505(-)$1	1	6	35	14.2970
(..((((((.(((......))))))))).	chr19:34883331-34883588(+)$1	1	66	95	11.2647
..(((((((((((....))))))))))).	chr11:65192395-65192685(+)$1	1	122	151	13.9973
(.((((.((.(((......)))..)).))	chrM:14222-14452(-)$1	1	83	112	10.5079
...(((((((.((.....)).))))))).	chr16:2809968-2810248(+)$1	1	228	257	11.7393
))))(((((((.(......).)))))))(	chr7:148638551-148638758(+)$1	1	99	128	10.8941
(((((..((((((......))))))...)	chr2:97559879-97560127(-)$1	1	100	129	10.5129
..(((((((((((....))))))))))).	chr11:65192485-65192764(+)$1	1	32	61	13.9973
(((.(((...(((....)))...))))))	chr11:62622001-62622220(-)$1	1	43	72	10.9518

#PSSM
c : 0.28	g : 0.12	d : 0.12	e : 0.08	= : 0.08	! : 0.08	% : 0.08	b : 0.04	a : 0.04	" : 0.04	h : 0.04	
# : 0.16	g : 0.12	: : 0.12	[ : 0.08	b : 0.08	d : 0.08	= : 0.08	! : 0.08	% : 0.08	$ : 0.04	" : 0.04	h : 0.04	
= : 0.32	# : 0.20	d : 0.16	g : 0.12	b : 0.04	$ : 0.04	! : 0.04	" : 0.04	h : 0.04	
= : 0.32	# : 0.20	g : 0.16	[ : 0.12	d : 0.08	$ : 0.04	f : 0.04	h : 0.04	
= : 0.32	# : 0.20	g : 0.16	d : 0.08	c : 0.08	b : 0.04	i : 0.04	$ : 0.04	f : 0.04	
= : 0.32	b : 0.16	d : 0.08	c : 0.08	a : 0.08	g : 0.08	# : 0.04	i : 0.04	$ : 0.04	f : 0.04	! : 0.04	
= : 0.32	[ : 0.16	c : 0.16	b : 0.12	g : 0.12	i : 0.04	f : 0.04	! : 0.04	
= : 0.32	[ : 0.12	g : 0.12	f : 0.12	b : 0.08	c : 0.08	" : 0.08	i : 0.04	d : 0.04	
= : 0.32	c : 0.12	g : 0.12	f : 0.12	b : 0.08	" : 0.08	a : 0.08	i : 0.04	d : 0.04	
[ : 0.36	= : 0.24	g : 0.12	" : 0.08	f : 0.08	c : 0.04	i : 0.04	d : 0.04	
c : 0.39	= : 0.24	b : 0.08	g : 0.08	f : 0.08	i : 0.04	d : 0.04	[ : 0.04	
c : 0.36	= : 0.24	b : 0.12	f : 0.08	o : 0.04	g : 0.04	i : 0.04	n : 0.04	[ : 0.04	
c : 0.36	n : 0.24	= : 0.12	f : 0.08	o : 0.04	g : 0.04	i : 0.04	b : 0.04	a : 0.04	
m : 0.36	o : 0.32	n : 0.32	
m : 0.36	o : 0.32	n : 0.32	
m : 0.36	o : 0.32	n : 0.32	
m : 0.36	o : 0.32	n : 0.28	d : 0.04	
o : 0.28	c : 0.24	= : 0.20	b : 0.08	n : 0.08	g : 0.04	i : 0.04	d : 0.04	
o : 0.28	c : 0.24	= : 0.20	b : 0.12	g : 0.04	i : 0.04	f : 0.04	d : 0.04	
c : 0.39	= : 0.24	] : 0.08	f : 0.08	g : 0.04	i : 0.04	d : 0.04	b : 0.04	a : 0.04	
] : 0.24	= : 0.24	c : 0.20	3 : 0.08	a : 0.08	f : 0.08	g : 0.04	i : 0.04	
= : 0.32	c : 0.20	g : 0.12	3 : 0.08	] : 0.08	f : 0.08	b : 0.04	i : 0.04	a : 0.04	
= : 0.32	b : 0.12	3 : 0.12	g : 0.12	f : 0.12	2 : 0.08	] : 0.04	i : 0.04	c : 0.04	
= : 0.32	2 : 0.12	c : 0.12	g : 0.12	f : 0.12	b : 0.08	] : 0.04	i : 0.04	3 : 0.04	
= : 0.32	] : 0.16	g : 0.12	c : 0.12	b : 0.08	f : 0.08	i : 0.04	2 : 0.04	3 : 0.04	
= : 0.32	c : 0.24	b : 0.12	g : 0.12	i : 0.04	a : 0.04	d : 0.04	f : 0.04	3 : 0.04	
= : 0.32	g : 0.12	d : 0.12	c : 0.12	3 : 0.12	] : 0.08	4 : 0.04	b : 0.04	f : 0.04	
d : 0.20	= : 0.20	g : 0.12	f : 0.12	c : 0.12	3 : 0.12	4 : 0.04	] : 0.04	H : 0.04	
d : 0.20	3 : 0.20	f : 0.12	= : 0.12	2 : 0.12	g : 0.08	4 : 0.04	b : 0.04	H : 0.04	] : 0.04	

#score	299.437832386972
#seq	25
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_transcript_m2_run1.txt

#BEAR
Hffffff!!ddddnnnnndddd22ffff	chr2:27305850-27306178(+)$1	328	278	306	11.2111
F:ggggggg[bboooooobb333ggggg	chr22:31722711-31723051(-)$1	340	185	213	9.7117
}A:==========nnnnn==========	chr5:134260112-134260343(+)$1	231	146	174	12.6503
dd[a!!ccc[cccnnnnnccc]ccc]a]	chr7:158165174-158165435(-)$1	261	49	77	14.5232
fiiiiiiiii!!annnnna22iiiiiii	chr8:145058861-145059186(-)$1	325	232	260	14.8267
c[ggggggg!!bbnnnnnbb22gggggg	chr19:18632079-18632363(-)$1	284	189	217	15.2257
gggggg[bb!!annnnna]bb]gggggg	chr3:197024773-197025070(-)$1	297	180	208	12.2690
dddd####eeeeennnnneeeee4444d	chr16:29911796-29912029(+)$1	233	59	87	11.1291
d!!ccc[ccc!!annnnna22ccc]ccc	chr14:103523569-103523889(-)$1	320	141	169	13.8531
[ccc[bb[cccbbnnnnnbb]ccc]bb]	chr2:242707671-242707994(+)$1	323	105	133	13.5422
cc[ddddffffffnnnnnffffff4444	chr19:17516713-17516988(+)$1	275	206	234	11.7372
i[ccc[dddd[bbnnnnnbb]dddd22c	chr14:99979648-99979958(-)$1	310	144	172	13.0705
hhh!!ccc[ddddnnnnndddd]ccc]h	chr12:57485408-57485704(+)$1	296	173	201	12.3551
gggffffff[a[annnnna]a]ffffff	chr2:220042998-220043301(+)$1	303	41	69	13.1403
b[ggggggg[cccnnnnnccc]gggggg	chrX:125606730-125606947(-)$1	217	175	203	15.0247
%%a[ggggggg[annnnna]ggggggg]	chr2:241565773-241566079(+)$1	306	71	99	13.0043
[ddddccc!!cccnnnnncccccc7777	chr2:242383835-242384097(+)$1	262	155	183	11.4593
=======!!cccooooooccc22=====	chr17:40126219-40126490(+)$1	271	3	31	11.5192
fffff[ccc!!bbnnnnnbb22ccc]ff	chr1:153932121-153932329(-)$1	208	116	144	14.3277
####iiiiiiiiinnnnniiiiiiiii5	chr2:242758516-242758763(+)$1	247	145	173	13.5705
c[bb[dddd!!bbnnnnnbb22dddd33	chr17:1733200-1733513(+)$1	313	188	216	13.3909
gggggccc[a!!annnnna22a]ccc]g	chr3:179040809-179041109(+)$1	300	119	147	14.3150
==========!!annnnna22=======	chr1:178995046-178995323(+)$1	277	199	227	15.5310
[eeeee[a[ddddnnnnndddd]a]eee	chr14:24901144-24901452(+)$1	308	178	206	12.2261
eebb!!dddd[bbnnnnnbb]dddd444	chr8:30669813-30670099(-)$1	286	152	180	12.7825
fff[dddd[cccooooooccc]dddd]f	chr9:136719066-136719377(-)$1	311	154	182	9.4547
cc:==========nnnnn==========	chrM:14179-14390(-)$1	211	162	190	14.4637
fffff[ccc!!bbnnnnnbb22ccc]ff	chr1:153932051-153932293(-)$1	242	80	108	14.3277
ffff!!gggggggnnnnnggggggg333	chr19:50361375-50361716(+)$1	341	164	192	14.1569
eeeee:ccc[cccnnnnnccc]ccc:ee	chr1:569834-570038(-)$1	204	49	77	11.5835
ffffff"""cccooooooccc333ffff	chr16:74485899-74486198(-)$1	299	2	30	9.9839
[ccc[bb[cccbbnnnnnbb]ccc]bb]	chr2:242707626-242707871(+)$1	245	150	178	13.5422
ffffff[a[ddddnnnnndddd]a]fff	chr16:9185817-9186052(+)$1	235	137	165	12.4986
"""ccc[bb!!bbnnnnnbb22bb]ccc	chr19:3490755-3491093(-)$1	338	184	212	13.4316
FFFdddd"""cccnnnnnccc]dddd:d	chr1:971623-971936(+)$1	313	238	266	11.0009
b!!ggggggg[bbnnnnnbb]ggggggg	chr16:58959495-58959722(+)$1	227	61	89	14.8802
fff"""bb[ddddnnnnndddd]bbfff	chr6:16305587-16305876(-)$1	289	188	216	11.5919
cc:==========nnnnn==========	chrM:14190-14398(-)$1	208	170	198	14.4637
hhhh!!a[cccbbnnnnnbb]ccc]a22	chr9:136229402-136229614(-)$1	212	55	83	13.5027
ii===========nnnnn==========	chr9:137024329-137024625(+)$1	296	185	213	15.6011
iiiiii[ffffffnnnnnffffffiiii	chr2:128951404-128951713(+)$1	309	84	112	12.8531
eeedddd!!ddddnnnnndddd22dddd	chr2:21266399-21266607(-)$1	208	48	76	11.0004
b[dddd[ddddbbnnnnnbb]ddddddd	chr14:24108921-24109128(+)$1	207	103	131	11.9048
e!!eeeee!!cccnnnnnccc4444eee	chr2:239972694-239972986(-)$1	292	120	148	13.5786
ee!!eeeee[cccnnnnnccc]eeeeee	chrM:14382-14585(-)$1	203	169	197	13.0068
b[ggggggg[cccnnnnnccc]gggggg	chr3:183911522-183911856(+)$1	334	117	145	15.0247
ff[ggggggg[bbnnnnnbb]ggggggg	chr3:196197196-196197451(-)$1	255	218	246	14.8677
============oooooo==========	chr9:136719200-136719553(-)$1	353	80	108	11.8092
fffff[a####bbnnnnnbba]ffffff	chr9:136229461-136229686(-)$1	225	82	110	13.7318
iiiiiiiii[cccooooooccc22iiii	chr14:21484855-21485203(-)$1	348	129	157	10.6515
h!!gggggggcccnnnnnccc]gggggg	chr19:18554137-18554438(-)$1	301	48	76	14.8464
bb!!dddd!!cccnnnnnccc]ddddbb	chr19:6414468-6414729(-)$1	261	98	126	12.6621
##a[a!!ffffffnnnnnffffff22a]	chr15:52970961-52971296(-)$1	335	98	126	12.0448
[ccc!!a[eeeeennnnneeeee]a333	chr16:70696404-70696722(-)$1	318	155	183	12.6928

#otherMatches

#Seq PSSM
GCGGCCCGGCUAGGCCAACUGGAGGGGC	chr2:27305850-27306178(+)$1	328	278	306	11.2111
GUGUCCCCACGGAAACAACCAUCUGGGG	chr22:31722711-31723051(-)$1	340	185	213	9.7117
GCGUUGAUUAGUAGUAGUUACUGGUUGA	chr5:134260112-134260343(+)$1	231	146	174	12.6503
UUGGGGCACUCUGGGGAUCAGCGUGGUG	chr7:158165174-158165435(-)$1	261	49	77	14.5232
GACUCACCAGAGCAAGAGGGGCUGGUGG	chr8:145058861-145059186(-)$1	325	232	260	14.8267
GCUGGCUUUGACGCGUUCCGAUGAAGCC	chr19:18632079-18632363(-)$1	284	189	217	15.2257
gccgcggcgAGCGAGGAGGCGGCGCGGC	chr3:197024773-197025070(-)$1	297	180	208	12.2690
CUGAGAGGGCUCCGGGAAGGAGUGACGU	chr16:29911796-29912029(+)$1	233	59	87	11.1291
gcgccgaggggaggagAGCGGCCCAUGG	chr14:103523569-103523889(-)$1	320	141	169	13.8531
AUGCGUGGGCAGCGGGGGGCAUGCGUGG	chr2:242707671-242707994(+)$1	323	105	133	13.5422
UGCCUCUGUCCCCACCGAGGGGACUAUG	chr19:17516713-17516988(+)$1	275	206	234	11.7372
UGCCGUGGGUGUUGCCAGGAGGCUCUUU	chr14:99979648-99979958(-)$1	310	144	172	13.0705
UCCGGAGCUUCCCAAGGGGGGAUGCUGG	chr12:57485408-57485704(+)$1	296	173	201	12.3551
UCCUCGCgggcucgggcggcggcugcgg	chr2:220042998-220043301(+)$1	303	41	69	13.1403
GACUAGUAUGGUGAUAGGUACAAUAUUG	chrX:125606730-125606947(-)$1	217	175	203	15.0247
ggggugaggcugugauggggAGUCUCAG	chr2:241565773-241566079(+)$1	306	71	99	13.0043
UGAAGCUAAUGCUGUGGAAGCUGGAAUG	chr2:242383835-242384097(+)$1	262	155	183	11.4593
CAGAACCCCGAGCCCUACUUCCAGGUUC	chr17:40126219-40126490(+)$1	271	3	31	11.5192
ACAGGUCAUAAACCUAGAGUCAGUGUCC	chr1:153932121-153932329(-)$1	208	116	144	14.3277
CCCAGGGUGUUGUGGGUGGCAGCACUUG	chr2:242758516-242758763(+)$1	247	145	173	13.5705
UGGUCGGCCAACUGAGCGAGGGGGCCAU	chr17:1733200-1733513(+)$1	313	188	216	13.3909
GGCCCAGCACAGCGUCCGGGAGCGCUAG	chr3:179040809-179041109(+)$1	300	119	147	14.3150
ggggcgggggagggcgcgcgacccccgc	chr1:178995046-178995323(+)$1	277	199	227	15.5310
GCCCUCAGGCCACAGUCAGUGGGUGGAG	chr14:24901144-24901452(+)$1	308	178	206	12.2261
UCGGGCCGCCAUGGACGACAAGGCGUUC	chr8:30669813-30670099(-)$1	286	152	180	12.7825
caugugcagauggggguguaugugcagg	chr9:136719066-136719377(-)$1	311	154	182	9.4547
GCGUUGAUUAGUAGUGGUUACUGGUUGA	chrM:14179-14390(-)$1	211	162	190	14.4637
ACAGGUCAUAAACCUAGAGUCAGUGUCC	chr1:153932051-153932293(-)$1	242	80	108	14.3277
UCCCAGGCAGCCAGCUGGUGGCUGUGCA	chr19:50361375-50361716(+)$1	341	164	192	14.1569
GCCUUUCUGGACAGGUGGUGUGUGGUGG	chr1:569834-570038(-)$1	204	49	77	11.5835
CUCAGCCAUGUCUGGACCGGCCCUGCUG	chr16:74485899-74486198(-)$1	299	2	30	9.9839
AUGCGUGGGCAGCGGGGGGCAUGCGUGG	chr2:242707626-242707871(+)$1	245	150	178	13.5422
GCACUGGUUCUCCAAGUGGGAGCGGCAG	chr16:9185817-9186052(+)$1	235	137	165	12.4986
GAGUGGGUCAGGUAGGGCACAGGGGCCA	chr19:3490755-3491093(-)$1	338	184	212	13.4316
GCUGUGCUUUGCUCCUGAAGCCGCACAC	chr1:971623-971936(+)$1	313	238	266	11.0009
CUGACCUGGGUCUCAGAUGGUCUUAGGU	chr16:58959495-58959722(+)$1	227	61	89	14.8802
UGUUAGGAAAACCAAUCAGGUUAUUGCA	chr6:16305587-16305876(-)$1	289	188	216	11.5919
GCGUUGAUUAGUAGUGGUUACUGGUUGA	chrM:14190-14398(-)$1	208	170	198	14.4637
AAGCCAGCCUGGCCAGCUGCUCAGACCA	chr9:136229402-136229614(-)$1	212	55	83	13.5027
CCUCUCUCAGGGCCUGGAGUCCUGGGGG	chr9:137024329-137024625(+)$1	296	185	213	15.6011
AAAAGAGUUACAAGGGAAUUGUAGUCUU	chr2:128951404-128951713(+)$1	309	84	112	12.8531
AGGGGCUGAGGAGGGGGUCUCCGGAGCC	chr2:21266399-21266607(-)$1	208	48	76	11.0004
UCGACUUCCUGGUGUGCAGCGCAGGGGU	chr14:24108921-24109128(+)$1	207	103	131	11.9048
CAAGGGCAGGGAGGGUUGCUUAGGAUGC	chr2:239972694-239972986(-)$1	292	120	148	13.5786
GAGGUCUUGGUGAGUGUUUUAGUGGGGU	chrM:14382-14585(-)$1	203	169	197	13.0068
CACAACCUUGGGAGCCCAUCCAAGGGUU	chr3:183911522-183911856(+)$1	334	117	145	15.0247
UUGGAUCAUUGAAACUGAUUGGGUGGUC	chr3:196197196-196197451(-)$1	255	218	246	14.8677
ugugcgcguguguguauguacaugugca	chr9:136719200-136719553(-)$1	353	80	108	11.8092
GGCUAGUGAGACCACACAGGGGUAGCCC	chr9:136229461-136229686(-)$1	225	82	110	13.7318
GCUAAGCUUGGGCUGGGCUGCUUGGGGC	chr14:21484855-21485203(-)$1	348	129	157	10.6515
UGGGGACCCCCCAGGGCAUGGUGGGGUC	chr19:18554137-18554438(-)$1	301	48	76	14.8464
CUGGUGGGGACGCGGGGAGCGGCCCAGG	chr19:6414468-6414729(-)$1	261	98	126	12.6621
GAUGUGAGCUGCUGGGCGAGCGGUGGAG	chr15:52970961-52971296(-)$1	335	98	126	12.0448
CCCCGGUGGUCCUAUGGCAGGAUGAGAA	chr16:70696404-70696722(-)$1	318	155	183	12.6928

#DB
)((((((..((((.....))))..))))	chr2:27305850-27306178(+)$1	1	278	306	11.2111
).(((((((.((......))...)))))	chr22:31722711-31723051(-)$1	1	185	213	9.7117
.).((((((((((.....))))))))))	chr5:134260112-134260343(+)$1	1	146	174	12.6503
((.(..(((.(((.....))).))).).	chr7:158165174-158165435(-)$1	1	49	77	14.5232
((((((((((..(.....)..)))))))	chr8:145058861-145059186(-)$1	1	232	260	14.8267
(.(((((((..((.....))..))))))	chr19:18632079-18632363(-)$1	1	189	217	15.2257
((((((.((..(.....).)).))))))	chr3:197024773-197025070(-)$1	1	180	208	12.2690
((((....(((((.....)))))....)	chr16:29911796-29912029(+)$1	1	59	87	11.1291
(..(((.(((..(.....)..))).)))	chr14:103523569-103523889(-)$1	1	141	169	13.8531
.(((.((.(((((.....)).))).)).	chr2:242707671-242707994(+)$1	1	105	133	13.5422
((.((((((((((.....))))))....	chr19:17516713-17516988(+)$1	1	206	234	11.7372
(.(((.((((.((.....)).))))..)	chr14:99979648-99979958(-)$1	1	144	172	13.0705
(((..(((.((((.....)))).))).)	chr12:57485408-57485704(+)$1	1	173	201	12.3551
(((((((((.(.(.....).).))))))	chr2:220042998-220043301(+)$1	1	41	69	13.1403
(.(((((((.(((.....))).))))))	chrX:125606730-125606947(-)$1	1	175	203	15.0247
..(.(((((((.(.....).))))))).	chr2:241565773-241566079(+)$1	1	71	99	13.0043
.(((((((..(((.....))))))....	chr2:242383835-242384097(+)$1	1	155	183	11.4593
(((((((..(((......)))..)))))	chr17:40126219-40126490(+)$1	1	3	31	11.5192
(((((.(((..((.....))..))).))	chr1:153932121-153932329(-)$1	1	116	144	14.3277
....(((((((((.....))))))))).	chr2:242758516-242758763(+)$1	1	145	173	13.5705
(.((.((((..((.....))..))))..	chr17:1733200-1733513(+)$1	1	188	216	13.3909
((((((((.(..(.....)..).))).)	chr3:179040809-179041109(+)$1	1	119	147	14.3150
((((((((((..(.....)..)))))))	chr1:178995046-178995323(+)$1	1	199	227	15.5310
.(((((.(.((((.....)))).).)))	chr14:24901144-24901452(+)$1	1	178	206	12.2261
))((..((((.((.....)).))))...	chr8:30669813-30670099(-)$1	1	152	180	12.7825
(((.((((.(((......))).)))).)	chr9:136719066-136719377(-)$1	1	154	182	9.4547
)).((((((((((.....))))))))))	chrM:14179-14390(-)$1	1	162	190	14.4637
(((((.(((..((.....))..))).))	chr1:153932051-153932293(-)$1	1	80	108	14.3277
((((..(((((((.....)))))))...	chr19:50361375-50361716(+)$1	1	164	192	14.1569
))))).(((.(((.....))).))).((	chr1:569834-570038(-)$1	1	49	77	11.5835
((((((...(((......)))...))))	chr16:74485899-74486198(-)$1	1	2	30	9.9839
.(((.((.(((((.....)).))).)).	chr2:242707626-242707871(+)$1	1	150	178	13.5422
((((((.(.((((.....)))).).)))	chr16:9185817-9186052(+)$1	1	137	165	12.4986
...(((.((..((.....))..)).)))	chr19:3490755-3491093(-)$1	1	184	212	13.4316
)))((((...(((.....))).)))).(	chr1:971623-971936(+)$1	1	238	266	11.0009
(..(((((((.((.....)).)))))))	chr16:58959495-58959722(+)$1	1	61	89	14.8802
(((...((.((((.....)))).)))))	chr6:16305587-16305876(-)$1	1	188	216	11.5919
)).((((((((((.....))))))))))	chrM:14190-14398(-)$1	1	170	198	14.4637
((((..(.(((((.....)).))).)..	chr9:136229402-136229614(-)$1	1	55	83	13.5027
))(((((((((((.....))))))))))	chr9:137024329-137024625(+)$1	1	185	213	15.6011
((((((.((((((.....))))))))))	chr2:128951404-128951713(+)$1	1	84	112	12.8531
(((((((..((((.....))))..))))	chr2:21266399-21266607(-)$1	1	48	76	11.0004
(.((((.((((((.....)).)))))))	chr14:24108921-24109128(+)$1	1	103	131	11.9048
(..(((((..(((.....)))....)))	chr2:239972694-239972986(-)$1	1	120	148	13.5786
((..(((((.(((.....))).))))))	chrM:14382-14585(-)$1	1	169	197	13.0068
(.(((((((.(((.....))).))))))	chr3:183911522-183911856(+)$1	1	117	145	15.0247
((.(((((((.((.....)).)))))))	chr3:196197196-196197451(-)$1	1	218	246	14.8677
((((((((((((......))))))))))	chr9:136719200-136719553(-)$1	1	80	108	11.8092
(((((.(....((.....))).))))))	chr9:136229461-136229686(-)$1	1	82	110	13.7318
(((((((((.(((......)))..))))	chr14:21484855-21485203(-)$1	1	129	157	10.6515
(..((((((((((.....))).))))))	chr19:18554137-18554438(-)$1	1	48	76	14.8464
((..((((..(((.....))).))))))	chr19:6414468-6414729(-)$1	1	98	126	12.6621
..(.(..((((((.....))))))..).	chr15:52970961-52971296(-)$1	1	98	126	12.0448
.(((..(.(((((.....))))).)...	chr16:70696404-70696722(-)$1	1	155	183	12.6928

#PSSM
f : 0.18	c : 0.09	[ : 0.09	b : 0.09	e : 0.09	i : 0.07	d : 0.05	g : 0.05	h : 0.05	= : 0.05	F : 0.03	# : 0.03	H : 0.01	} : 0.01	% : 0.01	" : 0.01	
f : 0.18	[ : 0.11	c : 0.11	e : 0.09	i : 0.07	! : 0.07	d : 0.05	g : 0.05	= : 0.05	h : 0.03	# : 0.03	: : 0.01	A : 0.01	% : 0.01	" : 0.01	F : 0.01	b : 0.01	
f : 0.16	g : 0.12	! : 0.11	c : 0.07	= : 0.07	: : 0.05	[ : 0.05	i : 0.05	d : 0.05	e : 0.05	h : 0.03	a : 0.03	b : 0.03	# : 0.01	" : 0.01	F : 0.01	
g : 0.16	f : 0.14	= : 0.12	d : 0.11	c : 0.11	i : 0.05	! : 0.05	[ : 0.05	e : 0.05	b : 0.03	a : 0.01	# : 0.01	" : 0.01	h : 0.01	
g : 0.18	f : 0.12	= : 0.12	d : 0.12	! : 0.11	i : 0.07	e : 0.07	c : 0.05	[ : 0.05	# : 0.01	" : 0.01	a : 0.01	
g : 0.16	= : 0.12	d : 0.12	! : 0.11	c : 0.09	f : 0.07	i : 0.07	[ : 0.07	e : 0.05	b : 0.03	# : 0.01	: : 0.01	" : 0.01	
g : 0.16	d : 0.14	= : 0.12	c : 0.12	[ : 0.12	i : 0.05	b : 0.05	a : 0.05	f : 0.03	e : 0.03	# : 0.01	" : 0.01	! : 0.01	
g : 0.16	c : 0.14	= : 0.11	d : 0.11	[ : 0.07	f : 0.07	! : 0.05	i : 0.05	b : 0.05	# : 0.03	a : 0.03	" : 0.03	e : 0.03	
g : 0.16	c : 0.14	! : 0.11	= : 0.11	[ : 0.11	f : 0.07	d : 0.07	i : 0.05	e : 0.05	b : 0.03	" : 0.03	# : 0.01	
d : 0.16	! : 0.16	[ : 0.14	c : 0.12	= : 0.11	g : 0.09	f : 0.05	i : 0.03	e : 0.03	a : 0.01	" : 0.01	# : 0.01	
c : 0.31	! : 0.18	d : 0.12	= : 0.09	[ : 0.07	f : 0.05	e : 0.03	g : 0.03	b : 0.01	a : 0.01	i : 0.01	# : 0.01	
b : 0.27	c : 0.25	d : 0.11	= : 0.09	! : 0.07	f : 0.05	e : 0.03	[ : 0.03	a : 0.01	i : 0.01	g : 0.01	
b : 0.25	c : 0.20	d : 0.11	a : 0.11	o : 0.09	= : 0.07	f : 0.05	e : 0.03	n : 0.01	i : 0.01	g : 0.01	
n : 0.88	o : 0.11	
n : 0.88	o : 0.11	
n : 0.88	o : 0.11	
n : 0.88	o : 0.11	
n : 0.87	o : 0.11	a : 0.01	
b : 0.27	c : 0.24	d : 0.11	a : 0.11	= : 0.09	f : 0.05	e : 0.03	] : 0.01	i : 0.01	g : 0.01	o : 0.01	
b : 0.29	c : 0.25	d : 0.11	= : 0.09	2 : 0.07	f : 0.05	e : 0.03	] : 0.03	i : 0.01	g : 0.01	
c : 0.25	2 : 0.16	] : 0.14	d : 0.11	= : 0.09	f : 0.05	e : 0.03	a : 0.03	g : 0.03	3 : 0.01	b : 0.01	i : 0.01	
] : 0.22	d : 0.16	= : 0.11	2 : 0.11	c : 0.11	g : 0.07	f : 0.05	3 : 0.03	i : 0.03	e : 0.03	a : 0.01	4 : 0.01	
c : 0.16	g : 0.16	d : 0.12	= : 0.11	f : 0.09	] : 0.09	2 : 0.07	e : 0.05	3 : 0.03	i : 0.03	b : 0.01	4 : 0.01	
c : 0.20	g : 0.18	= : 0.12	d : 0.12	f : 0.09	2 : 0.05	i : 0.03	4 : 0.03	a : 0.03	b : 0.03	3 : 0.01	e : 0.01	] : 0.01	
g : 0.18	d : 0.14	= : 0.12	] : 0.12	c : 0.11	f : 0.07	i : 0.07	4 : 0.05	7 : 0.01	b : 0.01	e : 0.01	2 : 0.01	a : 0.01	
g : 0.16	= : 0.12	f : 0.11	d : 0.11	i : 0.07	c : 0.07	] : 0.05	4 : 0.05	e : 0.05	b : 0.03	2 : 0.03	3 : 0.03	7 : 0.01	: : 0.01	a : 0.01	
g : 0.16	f : 0.14	= : 0.12	i : 0.07	e : 0.07	4 : 0.05	b : 0.05	] : 0.05	3 : 0.05	a : 0.03	c : 0.03	2 : 0.03	d : 0.03	7 : 0.01	: : 0.01	
f : 0.16	g : 0.16	= : 0.12	] : 0.09	d : 0.07	e : 0.07	i : 0.05	c : 0.05	3 : 0.05	4 : 0.03	h : 0.01	7 : 0.01	5 : 0.01	2 : 0.01	b : 0.01	

#score	701.5572071575588
#seq	54
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF854NXI_HNRNPU_transcript_m1_run1.txt

#BEAR
eeeee!!a[cccnnnnnccc]a4444e	chr1:23750195-23750470(-)$1	275	10	37	12.9912
d####gggggggnnnnngggggggddd	chr5:95294733-95295007(-)$1	274	165	192	12.3490
cccccc[eeeeennnnneeeee]ccc7	chr11:2695422-2695659(-)$1	237	171	198	10.4997
============mmmm===========	chr6:119651292-119651560(-)$1	268	52	79	10.3334
iiiiiii!!bboooooobb4444iiii	chrX:132933806-132934076(-)$1	270	142	169	10.8167
iiiiiiiii!!annnnna22iiiiiii	chr11:2686345-2686609(-)$1	264	114	141	12.9977
ccccc[dddd[annnnna]dddd]ccc	chr16:50615676-50615934(+)$1	258	180	207	10.8970
dd[bba!!ddddnnnnndddd22a]bb	chr16:46953171-46953429(+)$1	258	55	82	10.4909
========!!cccmmmmccc=======	chr13:50799434-50799711(+)$1	277	172	199	10.3418
Cccc!!ccc[bbnnnnnbb]ccc22cc	chr16:50593509-50593758(+)$1	249	2	29	10.6002
[ggggggg[bboooooobb]ggggggg	chr17:75464954-75465201(+)$1	247	52	79	10.2692
c]gggggggcccnnnnncccdddd[bb	chr17:53348616-53348860(+)$1	244	173	200	11.4602
===========ccclllcccggggggg	chr3:49045978-49046226(+)$1	248	169	196	10.2872
ffff[gggggggnnnnnggggggg22f	chr16:30014035-30014305(+)$1	270	31	58	11.9416
ddd[ccc[ddddnnnnndddd]ccc22	chr12:30907477-30907733(-)$1	256	92	119	10.4475
ddd==========mmmm==========	chr16:50587282-50587597(+)$1	315	284	311	9.9097
##ffffff[cccnnnnnccc]ffffff	chr1:87381183-87381462(+)$1	279	49	76	11.9283
eeeee####cccooooooccc22eeee	chr20:36134559-36134813(-)$1	254	144	171	10.0658
iiiiiii"""cccmmmmccc333iiii	chr17:70545519-70545772(-)$1	253	130	157	10.1161
e[bb[a####bbnnnnnbb4444a]bb	chr5:95295903-95296167(-)$1	264	84	111	11.8082
============nnnnn==========	chr10:77417103-77417351(+)$1	248	201	228	14.5214
dddd[gggggggnnnnngggggggddd	chr17:41620369-41620650(-)$1	281	4	31	12.1103
:ccc####ddddnnnnndddd22cccd	chr1:55326035-55326320(-)$1	285	183	210	10.5534
###bb####cccnnnnnccc4444bbd	chr2:120193345-120193591(+)$1	246	74	101	12.5094
bccc!!ffffffnnnnnffffff4444	chr2:65635003-65635261(-)$1	258	120	147	11.3166
bdddd[ffffffnnnnnffffff]ddd	chrX:132910520-132910777(-)$1	257	44	71	10.1613
eeeee####cccooooooccc22eeee	chr20:36134504-36134759(-)$1	255	90	117	10.0658
!!a[gggggggaooooooa]ggggggg	chr19:41770842-41771100(+)$1	258	40	67	10.9930
::dddd"""cccnnnnnccc333dddd	chr2:153255445-153255686(+)$1	241	151	178	11.0694
fff!!bbeeeeennnnneeeee4444b	chr2:191074272-191074586(-)$1	314	166	193	10.1553
###ggggggg[annnnna]ggggggg4	chr16:81598021-81598280(+)$1	259	72	99	13.1273
iiiiii!!ddddnnnnndddd22iiii	chr17:73889708-73889984(-)$1	276	107	134	12.1399
gg:iiiiiiiiiooooooiiiiiiiii	chr11:2714038-2714285(-)$1	247	79	106	10.2679
cc[a!!ffffffnnnnnffffff22a]	chr20:35115440-35115724(+)$1	284	183	210	11.0840
F:ffffff[cccnnnnnccc333ffff	chr22:31657761-31658088(+)$1	327	196	223	11.2481
i::iiiiiiiiiooooooiiiiiiiii	chr1:155283216-155283468(+)$1	252	219	246	9.4280
[dddda"""cccnnnnnccc666666a	chr8:121687836-121688112(-)$1	276	67	94	10.2527
''dddd[a[cccnnnnnccc]a]dddd	chr2:36682856-36683147(+)$1	291	69	96	11.0261
:bb####ccc[annnnna]ccc333bb	chr6:86352546-86352826(-)$1	280	41	68	11.5593
!!bb[gggggggnnnnnggggggg]bb	chr20:47547037-47547302(+)$1	265	215	242	12.6066
gggg[gggggggnnnnnggggggg]gg	chrX:133032746-133033014(-)$1	268	116	143	13.0471
b[ccc"""cccooooooccc333ccc]	chr3:61564245-61564520(+)$1	275	91	118	11.3356
dddeeeee!!bbnnnnnbb22eeeee]	chr16:50650686-50650937(+)$1	251	38	65	10.3990
[a[agggggggaooooooa]ggggggg	chr11:2702966-2703211(-)$1	245	209	236	10.8244
cc!!ffffffbbnnnnnbb]ffffff2	chr2:236500702-236500983(+)$1	281	197	224	10.4887
a[eeeee!!cccnnnnnccc]eeeee]	chr16:81581265-81581542(+)$1	277	95	122	12.3986
ddbb[gggggggnnnnnggggggg]bb	chrX:133008838-133009089(-)$1	251	13	40	12.1564
[ccc[ddddcccnnnnnccc4444ddd	chr2:201186617-201186914(+)$1	297	190	217	12.0831
iiiiiiiiibboooooobb]iiiiiii	chr2:153255744-153256008(+)$1	264	213	240	10.5460
:bb[ccc!!cccnnnnnccc22ccc]b	chr7:29319184-29319490(+)$1	306	24	51	11.6198
ccffffff[cccnnnnncccffffff:	chr3:37926898-37927196(+)$1	298	104	131	10.8335
eeeee!!eeeeennnnneeeee22eee	chr20:47548982-47549255(+)$1	273	213	240	10.3943
f!!eeeee[cccnnnnnccceeeee44	chr10:77462116-77462422(+)$1	306	57	84	12.0599
a[ccc[ccc[aooooooa]cccccc]a	chr16:89783787-89784068(-)$1	281	249	276	9.9405
[bb==========mmmm==========	chr16:50631900-50632231(+)$1	331	256	283	9.9700
eee!!gggggggooooooggggggg22	chr2:102321648-102321957(+)$1	309	249	276	10.1379
:==========oooooo==========	chr2:235867007-235867274(+)$1	267	101	128	11.3664
"""eeeee!!bbnnnnnbb]eeeee44	chr20:47903832-47904102(+)$1	270	140	167	11.3492

#otherMatches

#Seq PSSM
Cgggcgggggccgaacaggugcggggg	chr1:23750195-23750470(-)$1	275	10	37	12.9912
UAAUUGGUCAUGAUCUGCAUGACCACU	chr5:95294733-95295007(-)$1	274	165	192	12.3490
GGAGAGAGGGGCCUCCAGCUCUGCUCA	chr11:2695422-2695659(-)$1	237	171	198	10.4997
uuuucugaugguuggaaucgucaggag	chr6:119651292-119651560(-)$1	268	52	79	10.3334
UCUAGACAGGUGGCUAAAUGAAGGUCU	chrX:132933806-132934076(-)$1	270	142	169	10.8167
AGGGAGUUUGAGGCUGGCAGGGACUCU	chr11:2686345-2686609(-)$1	264	114	141	12.9977
GUGUUGCAAGGAUUGGUUGUUUGGGGC	chr16:50615676-50615934(+)$1	258	180	207	10.8970
guaggcaaaugaguaaaucgugcgucc	chr16:46953171-46953429(+)$1	258	55	82	10.4909
UUUGUGCAAAGCCUGGCGGUUGCAUGA	chr13:50799434-50799711(+)$1	277	172	199	10.3418
UGGGUGGUACCACUGUAUGUUGCAUCC	chr16:50593509-50593758(+)$1	249	2	29	10.6002
caauagcuguuggcuggagaggcuguu	chr17:75464954-75465201(+)$1	247	52	79	10.2692
AAACCAUGAGCUGAUAAAGUAUGCAUU	chr17:53348616-53348860(+)$1	244	173	200	11.4602
ucugacuuuaucccuaagggcaguggg	chr3:49045978-49046226(+)$1	248	169	196	10.2872
AGAUAGCGGCCCGUGAGGGGCUGCGCA	chr16:30014035-30014305(+)$1	270	31	58	11.9416
GGCGGCUGACCCGGCGAGGGUGGGCAG	chr12:30907477-30907733(-)$1	256	92	119	10.4475
UCUUUACGUGGUUUCAAAGCUAUGUGA	chr16:50587282-50587597(+)$1	315	284	311	9.9097
UGUCAGAUGAGGGGUAUUCUAAUUUGA	chr1:87381183-87381462(+)$1	279	49	76	11.9283
aggagaagaccaaaaacaugggguucc	chr20:36134559-36134813(-)$1	254	144	171	10.0658
cugcagugaaggugguggccggggcug	chr17:70545519-70545772(-)$1	253	130	157	10.1161
CAUGGGGAAACAGUUUAUGGACAUGCA	chr5:95295903-95296167(-)$1	264	84	111	11.8082
guuguguggcccuagguggguuacaua	chr10:77417103-77417351(+)$1	248	201	228	14.5214
agUGUGUGUGUGUUAGUUACAUGCUGC	chr17:41620369-41620650(-)$1	281	4	31	12.1103
ucccaguggcaggaggguuguagggga	chr1:55326035-55326320(-)$1	285	183	210	10.5534
aagcugagacaugaagaauggagaaga	chr2:120193345-120193591(+)$1	246	74	101	12.5094
GCCUAUUAGGGAAUGCCUCUCUACACA	chr2:65635003-65635261(-)$1	258	120	147	11.3166
UGUCAGGGCUAUGGGAAAUGGCUGUGA	chrX:132910520-132910777(-)$1	257	44	71	10.1613
aggagaagaccaaaaacaugggguucc	chr20:36134504-36134759(-)$1	255	90	117	10.0658
GACACUCAGUGCAGGGGGGACACUGGG	chr19:41770842-41771100(+)$1	258	40	67	10.9930
UACUGGAUGUGUGAUAAACAAUCCCAG	chr2:153255445-153255686(+)$1	241	151	178	11.0694
ggacuggucuuugaaaaagggaugguc	chr2:191074272-191074586(-)$1	314	166	193	10.1553
GAAUCCCCUAGAGUUGAUGUGGGGGGA	chr16:81598021-81598280(+)$1	259	72	99	13.1273
GUGCCUGUCCCUGGGGGAGGGUUGGGU	chr17:73889708-73889984(-)$1	276	107	134	12.1399
AGAGUUCAGUGGGCCUCAUUAUUGAGC	chr11:2714038-2714285(-)$1	247	79	106	10.2679
AGAGGAUUCAGAUUCAUUCUGGACACA	chr20:35115440-35115724(+)$1	284	183	210	11.0840
auggggcauccuggaaaaggUGUUGCC	chr22:31657761-31658088(+)$1	327	196	223	11.2481
UGGCAUCCAGGGAGAGGGCCCUGGAUG	chr1:155283216-155283468(+)$1	252	219	246	9.4280
GUGCCCUGACUAUGGUUUGGGGAAUUG	chr8:121687836-121688112(-)$1	276	67	94	10.2527
ugcauugugugauauguucggaggaug	chr2:36682856-36683147(+)$1	291	69	96	11.0261
ggcaggggcugagggagugagugaagc	chr6:86352546-86352826(-)$1	280	41	68	11.5593
aguuguaugagccugauguucauaaga	chr20:47547037-47547302(+)$1	265	215	242	12.6066
AGCUGGCCUAAGCAGGAUUUAGGUGGG	chrX:133032746-133033014(-)$1	268	116	143	13.0471
AUACCCAUCUGAGAAAACAGUUAGGUC	chr3:61564245-61564520(+)$1	275	91	118	11.3356
acaccuuucugccaucuguccaaagga	chr16:50650686-50650937(+)$1	251	38	65	10.3990
GGUCCCAGGGCCCCCACAGUGCCCUGG	chr11:2702966-2703211(-)$1	245	209	236	10.8244
uuaauucugggcaccacgcgccagaag	chr2:236500702-236500983(+)$1	281	197	224	10.4887
AGAAUUGGAGAGGCUGGCUCACAGUUG	chr16:81581265-81581542(+)$1	277	95	122	12.3986
UCUCAUGUAUGAGCCCUUCAUAUGAGA	chrX:133008838-133009089(-)$1	251	13	40	12.1564
UGGAAUGCUUGACUUACUCAAUAUAGU	chr2:201186617-201186914(+)$1	297	190	217	12.0831
UAUUUUCUUCAUAGUAUUGAAAGGAAG	chr2:153255744-153256008(+)$1	264	213	240	10.5460
AGAGGCUGGAGUGAAAGGCUGAGGUGU	chr7:29319184-29319490(+)$1	306	24	51	11.6198
CUAGUAGUGUCGUGGUGUGAGCUACUG	chr3:37926898-37927196(+)$1	298	104	131	10.8335
aagccgagagguuggccaucucaaggu	chr20:47548982-47549255(+)$1	273	213	240	10.3943
ugaguUCAUCAGAGAGGCUGUGGACCA	chr10:77462116-77462422(+)$1	306	57	84	12.0599
GUGGGAGAUGGGUGAGGCGAUCCCCUC	chr16:89783787-89784068(-)$1	281	249	276	9.9405
ugugugugugugugugugCGCGCACAC	chr16:50631900-50632231(+)$1	331	256	283	9.9700
GAAACAGCACAUACUGCAAUGUGUUCA	chr2:102321648-102321957(+)$1	309	249	276	10.1379
GAGGGCUGUUUGAGAGAGGGCGGUCCU	chr2:235867007-235867274(+)$1	267	101	128	11.3664
gggaagguaugaggaaguugaccuuaa	chr20:47903832-47904102(+)$1	270	140	167	11.3492

#DB
(((((..(.(((.....))).)....)	chr1:23750195-23750470(-)$1	1	10	37	12.9912
(....(((((((.....))))))))))	chr5:95294733-95295007(-)$1	1	165	192	12.3490
((((((.(((((.....))))).))).	chr11:2695422-2695659(-)$1	1	171	198	10.4997
((((((((((((....)))))))))))	chr6:119651292-119651560(-)$1	1	52	79	10.3334
(((((((..((......))....))))	chrX:132933806-132934076(-)$1	1	142	169	10.8167
(((((((((..(.....)..)))))))	chr11:2686345-2686609(-)$1	1	114	141	12.9977
(((((.((((.(.....).)))).)))	chr16:50615676-50615934(+)$1	1	180	207	10.8970
((.(((..((((.....))))..).))	chr16:46953171-46953429(+)$1	1	55	82	10.4909
((((((((..(((....))))))))))	chr13:50799434-50799711(+)$1	1	172	199	10.3418
((((..(((.((.....)).)))..))	chr16:50593509-50593758(+)$1	1	2	29	10.6002
.(((((((.((......)).)))))))	chr17:75464954-75465201(+)$1	1	52	79	10.2692
).)))))))(((.....)))((((.((	chr17:53348616-53348860(+)$1	1	173	200	11.4602
)))))))))))(((...)))(((((((	chr3:49045978-49046226(+)$1	1	169	196	10.2872
((((.(((((((.....)))))))..)	chr16:30014035-30014305(+)$1	1	31	58	11.9416
(((.(((.((((.....)))).)))..	chr12:30907477-30907733(-)$1	1	92	119	10.4475
)))((((((((((....))))))))))	chr16:50587282-50587597(+)$1	1	284	311	9.9097
..((((((.(((.....))).))))))	chr1:87381183-87381462(+)$1	1	49	76	11.9283
(((((....(((......)))..))))	chr20:36134559-36134813(-)$1	1	144	171	10.0658
(((((((...(((....)))...))))	chr17:70545519-70545772(-)$1	1	130	157	10.1161
(.((.(....((.....))....).))	chr5:95295903-95296167(-)$1	1	84	111	11.8082
((((((((((((.....))))))))))	chr10:77417103-77417351(+)$1	1	201	228	14.5214
((((.(((((((.....))))))))))	chr17:41620369-41620650(-)$1	1	4	31	12.1103
.(((....((((.....))))..)))(	chr1:55326035-55326320(-)$1	1	183	210	10.5534
...((....(((.....)))....)))	chr2:120193345-120193591(+)$1	1	74	101	12.5094
((((..((((((.....))))))....	chr2:65635003-65635261(-)$1	1	120	147	11.3166
(((((.((((((.....)))))).)))	chrX:132910520-132910777(-)$1	1	44	71	10.1613
(((((....(((......)))..))))	chr20:36134504-36134759(-)$1	1	90	117	10.0658
..(.((((((((......).)))))))	chr19:41770842-41771100(+)$1	1	40	67	10.9930
..((((...(((.....)))...))))	chr2:153255445-153255686(+)$1	1	151	178	11.0694
(((..(((((((.....)))))....)	chr2:191074272-191074586(-)$1	1	166	193	10.1553
...(((((((.(.....).))))))).	chr16:81598021-81598280(+)$1	1	72	99	13.1273
((((((..((((.....))))..))))	chr17:73889708-73889984(-)$1	1	107	134	12.1399
)).(((((((((......)))))))))	chr11:2714038-2714285(-)$1	1	79	106	10.2679
((.(..((((((.....))))))..).	chr20:35115440-35115724(+)$1	1	183	210	11.0840
).((((((.(((.....)))...))))	chr22:31657761-31658088(+)$1	1	196	223	11.2481
)..(((((((((......)))))))))	chr1:155283216-155283468(+)$1	1	219	246	9.4280
.(((((...(((.....)))......)	chr8:121687836-121688112(-)$1	1	67	94	10.2527
..((((.(.(((.....))).).))))	chr2:36682856-36683147(+)$1	1	69	96	11.0261
.((....(((.(.....).)))...))	chr6:86352546-86352826(-)$1	1	41	68	11.5593
..((.(((((((.....))))))).))	chr20:47547037-47547302(+)$1	1	215	242	12.6066
((((.(((((((.....))))))).))	chrX:133032746-133033014(-)$1	1	116	143	13.0471
(.(((...(((......)))...))).	chr3:61564245-61564520(+)$1	1	91	118	11.3356
((((((((..((.....))..))))).	chr16:50650686-50650937(+)$1	1	38	65	10.3990
.(.(((((((((......).)))))))	chr11:2702966-2703211(-)$1	1	209	236	10.8244
((..((((((((.....)).)))))).	chr2:236500702-236500983(+)$1	1	197	224	10.4887
(.(((((..(((.....))).))))).	chr16:81581265-81581542(+)$1	1	95	122	12.3986
))((.(((((((.....))))))).))	chrX:133008838-133009089(-)$1	1	13	40	12.1564
.(((.(((((((.....)))....)))	chr2:201186617-201186914(+)$1	1	190	217	12.0831
(((((((((((......)).)))))))	chr2:153255744-153256008(+)$1	1	213	240	10.5460
.((.(((..(((.....)))..))).)	chr7:29319184-29319490(+)$1	1	24	51	11.6198
))((((((.(((.....))))))))).	chr3:37926898-37927196(+)$1	1	104	131	10.8335
(((((..(((((.....)))))..)))	chr20:47548982-47549255(+)$1	1	213	240	10.3943
(..(((((.(((.....))))))))..	chr10:77462116-77462422(+)$1	1	57	84	12.0599
(.(((.(((.(......).)))))).)	chr16:89783787-89784068(-)$1	1	249	276	9.9405
.((((((((((((....))))))))))	chr16:50631900-50632231(+)$1	1	256	283	9.9700
(((..(((((((......)))))))..	chr2:102321648-102321957(+)$1	1	249	276	10.1379
.((((((((((......))))))))))	chr2:235867007-235867274(+)$1	1	101	128	11.3664
...(((((..((.....)).)))))..	chr20:47903832-47904102(+)$1	1	140	167	11.3492

#PSSM
d : 0.12	e : 0.10	c : 0.10	i : 0.10	[ : 0.08	: : 0.08	= : 0.06	f : 0.05	# : 0.05	b : 0.05	! : 0.03	g : 0.03	a : 0.03	C : 0.01	F : 0.01	' : 0.01	" : 0.01	
c : 0.15	d : 0.13	e : 0.08	= : 0.08	i : 0.08	# : 0.06	[ : 0.06	g : 0.05	! : 0.05	: : 0.05	b : 0.05	f : 0.03	] : 0.01	' : 0.01	a : 0.01	" : 0.01	
c : 0.13	d : 0.13	e : 0.10	b : 0.10	= : 0.08	i : 0.08	f : 0.08	# : 0.05	[ : 0.05	g : 0.05	: : 0.03	! : 0.03	a : 0.01	" : 0.01	
e : 0.13	c : 0.13	= : 0.12	i : 0.12	b : 0.08	d : 0.08	g : 0.06	f : 0.06	[ : 0.05	! : 0.05	# : 0.03	a : 0.03	
e : 0.13	= : 0.12	i : 0.12	[ : 0.12	c : 0.10	! : 0.08	g : 0.08	f : 0.06	d : 0.06	# : 0.05	b : 0.03	
g : 0.20	= : 0.12	i : 0.12	! : 0.08	# : 0.08	f : 0.06	e : 0.06	c : 0.05	[ : 0.05	a : 0.05	d : 0.05	b : 0.01	" : 0.01	
g : 0.20	= : 0.12	f : 0.12	i : 0.10	# : 0.10	! : 0.06	c : 0.06	e : 0.06	" : 0.05	[ : 0.03	d : 0.03	b : 0.01	
g : 0.20	= : 0.12	f : 0.12	e : 0.10	! : 0.08	# : 0.08	i : 0.06	" : 0.06	c : 0.05	a : 0.03	d : 0.03	[ : 0.01	
g : 0.18	[ : 0.12	= : 0.10	! : 0.10	d : 0.10	i : 0.06	c : 0.06	# : 0.06	f : 0.06	e : 0.05	" : 0.05	
c : 0.29	g : 0.17	= : 0.10	d : 0.08	! : 0.06	f : 0.06	e : 0.05	b : 0.05	[ : 0.03	i : 0.03	" : 0.01	# : 0.01	
c : 0.31	g : 0.15	b : 0.13	= : 0.10	d : 0.06	e : 0.05	[ : 0.05	f : 0.05	i : 0.03	! : 0.01	a : 0.01	
c : 0.31	g : 0.12	o : 0.10	a : 0.10	b : 0.08	= : 0.06	d : 0.06	e : 0.05	f : 0.05	i : 0.03	
n : 0.67	o : 0.22	c : 0.05	= : 0.03	m : 0.01	
n : 0.67	o : 0.22	m : 0.08	c : 0.01	
n : 0.67	o : 0.22	m : 0.08	l : 0.01	
n : 0.67	o : 0.22	m : 0.08	l : 0.01	
n : 0.67	o : 0.22	m : 0.06	= : 0.01	l : 0.01	
c : 0.29	b : 0.13	o : 0.12	g : 0.10	= : 0.08	a : 0.08	d : 0.06	e : 0.05	f : 0.05	
c : 0.32	b : 0.13	g : 0.12	= : 0.08	] : 0.06	d : 0.06	e : 0.05	f : 0.05	a : 0.03	i : 0.03	2 : 0.01	
c : 0.36	g : 0.13	] : 0.12	= : 0.08	d : 0.08	e : 0.05	f : 0.05	4 : 0.03	2 : 0.03	i : 0.03	
g : 0.20	= : 0.10	d : 0.10	e : 0.08	c : 0.08	f : 0.08	] : 0.06	4 : 0.06	i : 0.06	3 : 0.06	2 : 0.03	6 : 0.01	
g : 0.20	e : 0.12	= : 0.10	2 : 0.10	f : 0.10	4 : 0.06	i : 0.06	3 : 0.06	c : 0.05	a : 0.03	d : 0.03	] : 0.01	6 : 0.01	
g : 0.20	4 : 0.10	= : 0.10	2 : 0.10	f : 0.10	3 : 0.08	i : 0.06	c : 0.06	e : 0.06	] : 0.03	d : 0.03	6 : 0.01	
g : 0.20	i : 0.12	c : 0.10	= : 0.10	e : 0.10	4 : 0.08	f : 0.06	2 : 0.05	d : 0.05	] : 0.03	a : 0.03	6 : 0.01	3 : 0.01	
c : 0.12	i : 0.12	e : 0.12	d : 0.10	= : 0.10	g : 0.10	] : 0.08	f : 0.06	4 : 0.05	2 : 0.05	[ : 0.01	b : 0.01	6 : 0.01	3 : 0.01	
i : 0.12	b : 0.12	d : 0.10	= : 0.10	g : 0.10	4 : 0.08	c : 0.08	e : 0.08	f : 0.06	2 : 0.05	] : 0.03	a : 0.01	6 : 0.01	
d : 0.13	b : 0.13	i : 0.12	= : 0.10	g : 0.08	e : 0.06	4 : 0.06	] : 0.06	f : 0.05	2 : 0.05	c : 0.03	a : 0.03	7 : 0.01	: : 0.01	

#score	647.7003447112262
#seq	58
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_UTR_m3_run1.txt

#BEAR
========ttttttttttt==========	chr17:48474583-48474842(-)$1	259	44	73	25.2724
&ffffffuuuuuuuuuuuuffffff8888	chr20:30754664-30754907(+)$1	243	175	204	20.9829
iiieeeeewwwwwwwwwwwwwweeeee:F	chr11:118900887-118901182(-)$1	295	191	220	20.8213
gggggggvvvvvvvvvvvvvggggggg22	chr3:195791144-195791366(-)$1	222	84	113	24.2597
cc[eeeeewwwwwwwwwwwwwweeeeecc	chr3:38294417-38294685(+)$1	268	24	53	22.2552
fffffffvvvvvvvvvvvvvffffff333	chr11:62437433-62437672(-)$1	239	200	229	23.3925
ddd"""bbtttttttttttbb333dddd2	chr8:144898488-144898732(-)$1	244	13	42	23.0224
!eeeee[awwwwwwwwwwwwwwa]eeeee	chr17:46940150-46940419(+)$1	269	176	205	22.2480
:ddddwwwwwwwwwwwwwwddddgggggg	chr9:130742309-130742558(-)$1	249	175	204	20.5635
:ccccccvvvvvvvvvvvvvccc]ccc:c	chr6:43146888-43147155(+)$1	267	100	129	22.6223
:ffffffvvvvvvvvvvvvvffffff:cc	chr19:9271675-9271917(+)$1	242	174	203	21.2698
:gggggggtttttttttttgggggggddd	chr14:77978526-77978826(-)$1	300	78	107	23.3154
eeedddduuuuuuuuuuuudddd]eeeee	chr11:45955251-45955509(-)$1	258	178	207	23.3786
ggggggguuuuuuuuuuuugggggggddd	chr15:77239661-77239994(+)$1	333	132	161	24.0433
cc!!ddddtttttttttttddddccc:ee	chr19:54972530-54972757(+)$1	227	133	162	23.3774
ddd[ddddvvvvvvvvvvvvvdddd]ddd	chr22:19711752-19712022(+)$1	270	230	259	22.9781
cccdddduuuuuuuuuuuudddd]ccc]d	chr7:106300214-106300469(-)$1	255	148	177	24.0245
ggggg[bbtttttttttttbb]ggggggg	chr3:39184185-39184435(-)$1	250	212	241	23.9643
ff"""ccctttttttttttccc22fffff	chr19:18474128-18474395(+)$1	267	86	115	24.2353
iiiiiiiivvvvvvvvvvvvviiiiiiii	chrX:38665027-38665281(+)$1	254	86	115	24.0806
iiiiiiiivvvvvvvvvvvvviiiiiiii	chr17:77807544-77807824(-)$1	280	34	63	24.0806
ee"""bbuuuuuuuuuuuubb333eeeee	chr6:44222506-44222755(-)$1	249	34	63	23.3594
iiiiiiiuuuuuuuuuuuuiiiiiiiiid	chr5:90666543-90666805(-)$1	262	69	98	24.4319
gg!!ddddtttttttttttdddd22gggg	chr1:20234173-20234456(+)$1	283	204	233	24.4381
====[ccctttttttttttccc=======	chr20:62904879-62905108(+)$1	229	184	213	25.6492
eeee[cccwwwwwwwwwwwwwwccc]eee	chr19:867892-868202(-)$1	310	147	176	22.1948
eeeeddddvvvvvvvvvvvvvdddd]eee	chr19:54972477-54972694(+)$1	217	46	75	23.0647
ccfffffftttttttttttffffff]ccc	chr17:77082885-77083133(+)$1	248	185	214	23.5252
ccceeeeettttttttttteeeee22ccc	chr6:26199676-26199921(+)$1	245	96	125	23.7950
iii:ddddtttttttttttdddd:iiiii	chr17:18168247-18168496(+)$1	249	191	220	22.4425
gggggggvvvvvvvvvvvvvggggggg22	chr3:195791166-195791392(-)$1	226	110	139	24.2597
###dddduuuuuuuuuuuudddd4444dd	chr17:76212704-76212956(+)$1	252	172	201	23.9934
!a[eeeeettttttttttteeeee]a22g	chr16:70432759-70433013(-)$1	254	84	113	24.0379
""eeeeeuuuuuuuuuuuueeeee333dd	chr8:126442631-126442914(+)$1	283	191	220	24.0049
dddd[ccctttttttttttccc]dddd44	chr5:148880517-148880794(-)$1	277	197	226	24.1159
$$$eeeeeuuuuuuuuuuuueeeee6666	chr7:151873747-151873995(-)$1	248	86	115	21.8870
ccc[ddddtttttttttttdddd22ccc]	chr13:111545286-111545504(-)$1	218	158	187	24.2344
ff[bbwwwwwwwwwwwwwwbb]ffffff3	chr11:290513-290765(+)$1	252	151	180	20.5694
fff!!ccctttttttttttccc22fffff	chr3:151986730-151986974(+)$1	244	72	101	24.2089
cc!!ddddyyyyyyyyyyyyyyyydddd2	chr12:57453692-57453942(-)$1	250	119	148	20.9496
ccc[ddddtttttttttttdddd22ccc]	chr13:111545275-111545486(-)$1	211	140	169	24.2344
%ddddyyyyyyyyyyyyyyyydddd]eee	chr19:868096-868355(-)$1	259	187	216	20.7527
hhhhhhhhttttttttttthhhhhhhh33	chr1:228402495-228402797(+)$1	302	140	169	21.5727
###eeeeeyyyyyyyyyyyyyyyyeeeee	chr14:73577594-73577876(+)$1	282	78	107	21.0721
[ccc!!bbuuuuuuuuuuuubb22ccc]b	chr1:12071696-12071950(+)$1	254	200	229	23.2946
cc[eeeeettttttttttteeeeeccc]d	chr16:2757916-2758183(+)$1	267	57	86	24.2911
"""cccvvvvvvvvvvvvvccc22eeeee	chrX:65382477-65382737(+)$1	260	172	201	23.7436
hhhh[cccwwwwwwwwwwwwwwccc]hhh	chr16:698220-698472(+)$1	252	29	58	21.3449
========ttttttttttt==========	chr16:30537570-30537852(-)$1	282	43	72	25.2724
dffffffuuuuuuuuuuuuffffff333d	chr3:5021262-5021470(+)$1	208	47	76	23.2476
!ddddccctttttttttttccc]dddd22	chr10:22030859-22031118(+)$1	259	160	189	24.0733
b####ccctttttttttttccc666666b	chr19:50412790-50413034(-)$1	244	151	180	21.5665
!!cccyyyyyyyyyyyyyyyyccc22ddd	chr14:23388191-23388446(-)$1	255	175	204	21.5959
!!ffffffwwwwwwwwwwwwwwffffff2	chr3:9517359-9517606(+)$1	247	188	217	21.5576
#bb!!ccctttttttttttccc]bb4444	chr10:18940263-18940518(-)$1	255	214	243	24.3182
"""cccvvvvvvvvvvvvvccc]ffffff	chr22:22893242-22893483(-)$1	241	134	163	23.6406
cc[eeeeeuuuuuuuuuuuueeeee]ccc	chr20:30193788-30194035(+)$1	247	17	46	24.2339
====!!auuuuuuuuuuuua22=======	chr4:103265832-103266066(-)$1	234	11	40	24.6475

#otherMatches

#Seq PSSM
CGGCGACGGAGGGCUCAGGCGUCGUCGUU	chr17:48474583-48474842(-)$1	259	44	73	25.2724
AGAGCGAUAUUGGAGUCUUUUGUUCAUUC	chr20:30754664-30754907(+)$1	243	175	204	20.9829
CCACGAGCUGCCCAGUCCCUCUGCUUGCG	chr11:118900887-118901182(-)$1	295	191	220	20.8213
GGGGCCCAGAGAGAUGCAUGGGGCCCUGG	chr3:195791144-195791366(-)$1	222	84	113	24.2597
CUAUUGGCCUAAACCCACUACUGCCAAAG	chr3:38294417-38294685(+)$1	268	24	53	22.2552
AUGGGCUUUGGACUAGAAAUAGCCCAGGC	chr11:62437433-62437672(-)$1	239	200	229	23.3925
CGUUUUGAUAACAGUGACCUCUCUGCGUG	chr8:144898488-144898732(-)$1	244	13	42	23.0224
AGCAGAUCUUUGAAGACCACGUGUUCUGC	chr17:46940150-46940419(+)$1	269	176	205	22.2480
UUCCAAACUACUUUCACCCUGGAGGAGCU	chr9:130742309-130742558(-)$1	249	175	204	20.5635
UUCACGUUUUCUUUACACACACGUUGACG	chr6:43146888-43147155(+)$1	267	100	129	22.6223
CCUUCAGGAACCAGUCAACGCUGAAGACG	chr19:9271675-9271917(+)$1	242	174	203	21.2698
AGGCUUUAAAGGAGAUAGAUGAAGUUGGG	chr14:77978526-77978826(-)$1	300	78	107	23.3154
GUACAUGCAAAGAUUGGACCAUGUUACAU	chr11:45955251-45955509(-)$1	258	178	207	23.3786
UGACAAAAAUGGUGAUGGAUUUGUUAGUU	chr15:77239661-77239994(+)$1	333	132	161	24.0433
UGAAGUGCCAGCACCACCAGCACCAGAUC	chr19:54972530-54972757(+)$1	227	133	162	23.3774
CCUGAGGAGAGAACCGGUGCGUCCUGAGG	chr22:19711752-19712022(+)$1	270	230	259	22.9781
AGAUCCGUUUUCUCACUGUUGGACUCUAC	chr7:106300214-106300469(-)$1	255	148	177	24.0245
CUUUGCGUGAUGUUCCUUAGCCCAAAGAC	chr3:39184185-39184435(-)$1	250	212	241	23.9643
UUACCUACUACACCUCUUUGUACCAGAGU	chr19:18474128-18474395(+)$1	267	86	115	24.2353
UGGGUUGCCACACUUGGGAAAGCAGCCCG	chrX:38665027-38665281(+)$1	254	86	115	24.0806
ACCGUUACUUUCAAGGAGUACGUGACGGU	chr17:77807544-77807824(-)$1	280	34	63	24.0806
GCCCUGCUACUCUCCAUCUGCUCCGCAUG	chr6:44222506-44222755(-)$1	249	34	63	23.3594
GAAAAAACGCACUGACAUUUUUUUUUAUU	chr5:90666543-90666805(-)$1	262	69	98	24.4319
CGUUCAAGCUGCCUCUUUUUUUGUUCGAA	chr1:20234173-20234456(+)$1	283	204	233	24.4381
ACUGCUGGGCUCAUCCACACCAUGGUUUU	chr20:62904879-62905108(+)$1	229	184	213	25.6492
CUCCUCGGUUUCCUUGCCUCACCCGCGGA	chr19:867892-868202(-)$1	310	147	176	22.1948
GCGGGGGCACCCAGCAAGCCCGCCCACCG	chr19:54972477-54972694(+)$1	217	46	75	23.0647
CGUUGGCAAUUUACUGUGCUGCUGAGUGU	chr17:77082885-77083133(+)$1	248	185	214	23.5252
AGUGUUUAUUUAUCAUGCCUGAACCUGCU	chr6:26199676-26199921(+)$1	245	96	125	23.7950
AGGCCAGCUUCACAUUUCUGCUGAGAGAA	chr17:18168247-18168496(+)$1	249	191	220	22.4425
GGGGCCCAGAGAGAUGCAUGGGGCCCUGG	chr3:195791166-195791392(-)$1	226	110	139	24.2597
UAAGAACUGCUCAAACCCUGUUCAAUGUC	chr17:76212704-76212956(+)$1	252	172	201	23.9934
UGUGCUCUCUGUUGUGAUUGGAGUUCUAG	chr16:70432759-70433013(-)$1	254	84	113	24.0379
CUCUGCCUCCCGGACUAUCGGCAGCCUCG	chr8:126442631-126442914(+)$1	283	191	220	24.0049
AAAGAAUCAAUUAUAAACAGGUAUUUUAA	chr5:148880517-148880794(-)$1	277	197	226	24.1159
CUAUUUGAGAAAAGAACCAAUCGAGAAAC	chr7:151873747-151873995(-)$1	248	86	115	21.8870
ACACUUAUUUUUCCUUUCUGUAAUAUGUU	chr13:111545286-111545504(-)$1	218	158	187	24.2344
CACGCUCUCACAGGUACCUGUAUGGCCAC	chr11:290513-290765(+)$1	252	151	180	20.5694
CAUCUUGGAAUCAUGACUCCCACAAUGCC	chr3:151986730-151986974(+)$1	244	72	101	24.2089
GGCUCUUCCCACCUCACGCCAAAUGAAGU	chr12:57453692-57453942(-)$1	250	119	148	20.9496
ACACUUAUUUUUCCUUUCUGUAAUAUGUU	chr13:111545275-111545486(-)$1	211	140	169	24.2344
AGUCCACACACCACUCUCCCAGGACCCCC	chr19:868096-868355(-)$1	259	187	216	20.7527
UGGCACCUACACCUGGAUCAGGUGCCACG	chr1:228402495-228402797(+)$1	302	140	169	21.5727
AAAGCCUUGUCUGAAACCUACUCUGAGGC	chr14:73577594-73577876(+)$1	282	78	107	21.0721
CAGCUUUCUCUGGUUCAUUUGAUUGCUUG	chr1:12071696-12071950(+)$1	254	200	229	23.2946
CAAGAGAACUUUGUACCCCUUCUCUGUGU	chr16:2757916-2758183(+)$1	267	57	86	24.2911
AAGAGGAAAAUGUGCCCAGCCUGCCUGGA	chrX:65382477-65382737(+)$1	260	172	201	23.7436
GCCCUGCCCACCCACUGCGCCUGGCUGGG	chr16:698220-698472(+)$1	252	29	58	21.3449
CGGCUCGGGGCAACCGAGGCCGGGUCGCG	chr16:30537570-30537852(-)$1	282	43	72	25.2724
CGGAGAGACCCCCGAAGCCCUCUCCAGGG	chr3:5021262-5021470(+)$1	208	47	76	23.2476
AUGCACAACAAAGGAUUAAUUGCUGCAAG	chr10:22030859-22031118(+)$1	259	160	189	24.0733
CACUUGCCACCCAGACUCCGGCCACACAG	chr19:50412790-50413034(-)$1	244	151	180	21.5665
ACUCCCCACAACAUACUCAAAGGAACGGA	chr14:23388191-23388446(-)$1	255	175	204	21.5959
ACUCUGAGUUCCACCUCCUUUCCUCAGAA	chr3:9517359-9517606(+)$1	247	188	217	21.5576
GGCUUGAGAAAGCGUGUACCUCUGCAUUU	chr10:18940263-18940518(-)$1	255	214	243	24.3182
GACGGGAGACACAGCCAGACCCUGAAGGC	chr22:22893242-22893483(-)$1	241	134	163	23.6406
GAGCGGCGUCCCUUCCAACCCGCCGGUCU	chr20:30193788-30194035(+)$1	247	17	46	24.2339
GGGGCCCACUCCGCCUAUCGCUCCCCUCG	chr4:103265832-103266066(-)$1	234	11	40	24.6475

#DB
((((((((...........))))))))))	chr17:48474583-48474842(-)$1	1	44	73	25.2724
.((((((............))))))....	chr20:30754664-30754907(+)$1	1	175	204	20.9829
)))(((((..............))))).)	chr11:118900887-118901182(-)$1	1	191	220	20.8213
(((((((.............)))))))..	chr3:195791144-195791366(-)$1	1	84	113	24.2597
((.(((((..............)))))))	chr3:38294417-38294685(+)$1	1	24	53	22.2552
(((((((.............))))))...	chr11:62437433-62437672(-)$1	1	200	229	23.3925
(((...((...........))...)))).	chr8:144898488-144898732(-)$1	1	13	42	23.0224
.(((((.(..............).)))))	chr17:46940150-46940419(+)$1	1	176	205	22.2480
.((((..............))))((((((	chr9:130742309-130742558(-)$1	1	175	204	20.5635
.((((((.............))).))).(	chr6:43146888-43147155(+)$1	1	100	129	22.6223
.((((((.............)))))).((	chr19:9271675-9271917(+)$1	1	174	203	21.2698
.(((((((...........)))))))(((	chr14:77978526-77978826(-)$1	1	78	107	23.3154
(((((((............)))).)))))	chr11:45955251-45955509(-)$1	1	178	207	23.3786
(((((((............))))))))))	chr15:77239661-77239994(+)$1	1	132	161	24.0433
((..((((...........))))))).((	chr19:54972530-54972757(+)$1	1	133	162	23.3774
(((.((((.............)))).)))	chr22:19711752-19712022(+)$1	1	230	259	22.9781
(((((((............)))).))).)	chr7:106300214-106300469(-)$1	1	148	177	24.0245
(((((.((...........)).)))))))	chr3:39184185-39184435(-)$1	1	212	241	23.9643
((...(((...........)))..)))))	chr19:18474128-18474395(+)$1	1	86	115	24.2353
((((((((.............))))))))	chrX:38665027-38665281(+)$1	1	86	115	24.0806
((((((((.............))))))))	chr17:77807544-77807824(-)$1	1	34	63	24.0806
((...((............))...)))))	chr6:44222506-44222755(-)$1	1	34	63	23.3594
(((((((............))))))))))	chr5:90666543-90666805(-)$1	1	69	98	24.4319
((..((((...........))))..))))	chr1:20234173-20234456(+)$1	1	204	233	24.4381
((((.(((...........))))))))))	chr20:62904879-62905108(+)$1	1	184	213	25.6492
((((.(((..............))).)))	chr19:867892-868202(-)$1	1	147	176	22.1948
((((((((.............)))).)))	chr19:54972477-54972694(+)$1	1	46	75	23.0647
((((((((...........)))))).)))	chr17:77082885-77083133(+)$1	1	185	214	23.5252
((((((((...........)))))..)))	chr6:26199676-26199921(+)$1	1	96	125	23.7950
))).((((...........)))).(((((	chr17:18168247-18168496(+)$1	1	191	220	22.4425
(((((((.............)))))))..	chr3:195791166-195791392(-)$1	1	110	139	24.2597
...((((............))))....))	chr17:76212704-76212956(+)$1	1	172	201	23.9934
.(.(((((...........))))).)..)	chr16:70432759-70433013(-)$1	1	84	113	24.0379
..(((((............)))))...))	chr8:126442631-126442914(+)$1	1	191	220	24.0049
((((.(((...........))).))))..	chr5:148880517-148880794(-)$1	1	197	226	24.1159
...(((((............)))))....	chr7:151873747-151873995(-)$1	1	86	115	21.8870
(((.((((...........))))..))).	chr13:111545286-111545504(-)$1	1	158	187	24.2344
((.((..............)).)))))).	chr11:290513-290765(+)$1	1	151	180	20.5694
(((..(((...........)))..)))))	chr3:151986730-151986974(+)$1	1	72	101	24.2089
((..((((................)))).	chr12:57453692-57453942(-)$1	1	119	148	20.9496
(((.((((...........))))..))).	chr13:111545275-111545486(-)$1	1	140	169	24.2344
.((((................)))).)))	chr19:868096-868355(-)$1	1	187	216	20.7527
((((((((...........))))))))..	chr1:228402495-228402797(+)$1	1	140	169	21.5727
...(((((................)))))	chr14:73577594-73577876(+)$1	1	78	107	21.0721
.(((..((............))..))).)	chr1:12071696-12071950(+)$1	1	200	229	23.2946
((.(((((...........)))))))).)	chr16:2757916-2758183(+)$1	1	57	86	24.2911
...(((.............)))..)))))	chrX:65382477-65382737(+)$1	1	172	201	23.7436
((((.(((..............))).)))	chr16:698220-698472(+)$1	1	29	58	21.3449
((((((((...........))))))))))	chr16:30537570-30537852(-)$1	1	43	72	25.2724
(((((((............))))))...)	chr3:5021262-5021470(+)$1	1	47	76	23.2476
.(((((((...........))).))))..	chr10:22030859-22031118(+)$1	1	160	189	24.0733
(....(((...........)))......)	chr19:50412790-50413034(-)$1	1	151	180	21.5665
..(((................)))..)))	chr14:23388191-23388446(-)$1	1	175	204	21.5959
..((((((..............)))))).	chr3:9517359-9517606(+)$1	1	188	217	21.5576
.((..(((...........))).))....	chr10:18940263-18940518(-)$1	1	214	243	24.3182
...(((.............))).))))))	chr22:22893242-22893483(-)$1	1	134	163	23.6406
((.(((((............))))).)))	chr20:30193788-30194035(+)$1	1	17	46	24.2339
((((..(............)..)))))))	chr4:103265832-103266066(-)$1	1	11	40	24.6475

#PSSM
c : 0.17	i : 0.08	g : 0.08	! : 0.08	= : 0.06	f : 0.06	d : 0.06	: : 0.06	e : 0.06	# : 0.05	" : 0.05	h : 0.03	& : 0.01	$ : 0.01	% : 0.01	[ : 0.01	b : 0.01	
c : 0.20	f : 0.12	g : 0.10	d : 0.10	i : 0.08	e : 0.08	= : 0.06	# : 0.05	" : 0.05	h : 0.03	! : 0.03	a : 0.01	$ : 0.01	b : 0.01	
f : 0.12	c : 0.12	d : 0.10	i : 0.08	g : 0.08	[ : 0.08	e : 0.08	= : 0.06	" : 0.06	! : 0.05	# : 0.05	h : 0.03	$ : 0.01	b : 0.01	
e : 0.20	d : 0.12	f : 0.10	g : 0.08	c : 0.08	! : 0.08	= : 0.06	" : 0.05	[ : 0.05	i : 0.05	h : 0.03	: : 0.01	b : 0.01	# : 0.01	
d : 0.24	e : 0.17	f : 0.10	g : 0.08	c : 0.06	[ : 0.06	! : 0.06	" : 0.05	i : 0.05	= : 0.03	b : 0.01	h : 0.01	# : 0.01	
c : 0.20	d : 0.18	e : 0.17	f : 0.10	g : 0.06	i : 0.05	= : 0.03	w : 0.03	y : 0.03	! : 0.03	" : 0.01	[ : 0.01	b : 0.01	h : 0.01	
d : 0.18	c : 0.17	e : 0.15	f : 0.10	g : 0.06	b : 0.06	i : 0.05	= : 0.03	w : 0.03	y : 0.03	v : 0.03	[ : 0.01	h : 0.01	a : 0.01	
u : 0.17	c : 0.15	e : 0.13	d : 0.13	v : 0.12	b : 0.05	= : 0.03	w : 0.03	i : 0.03	f : 0.03	y : 0.03	a : 0.01	g : 0.01	h : 0.01	
t : 0.37	u : 0.22	v : 0.18	w : 0.13	y : 0.06	
t : 0.37	u : 0.22	v : 0.18	w : 0.13	y : 0.06	
t : 0.37	u : 0.22	v : 0.18	w : 0.13	y : 0.06	
t : 0.37	u : 0.22	v : 0.18	w : 0.13	y : 0.06	
t : 0.37	u : 0.22	v : 0.18	w : 0.13	y : 0.06	
t : 0.37	u : 0.22	v : 0.18	w : 0.13	y : 0.06	
t : 0.37	u : 0.22	v : 0.18	w : 0.13	y : 0.06	
t : 0.37	u : 0.22	v : 0.18	w : 0.13	y : 0.06	
t : 0.37	u : 0.22	v : 0.18	w : 0.13	y : 0.06	
t : 0.37	u : 0.22	v : 0.18	w : 0.13	y : 0.06	
t : 0.37	u : 0.22	v : 0.18	w : 0.13	y : 0.06	
v : 0.15	d : 0.15	c : 0.15	w : 0.10	b : 0.06	e : 0.06	y : 0.06	f : 0.05	u : 0.05	= : 0.03	g : 0.03	i : 0.01	h : 0.01	a : 0.01	
c : 0.17	d : 0.15	w : 0.10	e : 0.10	f : 0.08	b : 0.08	g : 0.06	v : 0.06	y : 0.06	= : 0.03	i : 0.01	h : 0.01	2 : 0.01	
d : 0.20	c : 0.18	w : 0.10	e : 0.10	f : 0.08	g : 0.06	i : 0.05	= : 0.03	3 : 0.03	] : 0.03	y : 0.03	h : 0.01	b : 0.01	2 : 0.01	
d : 0.20	e : 0.13	f : 0.12	g : 0.08	= : 0.06	c : 0.06	2 : 0.06	] : 0.06	i : 0.05	3 : 0.03	y : 0.03	a : 0.01	h : 0.01	6 : 0.01	
f : 0.13	e : 0.13	2 : 0.12	g : 0.10	d : 0.08	= : 0.06	] : 0.06	c : 0.06	i : 0.05	3 : 0.03	y : 0.03	: : 0.01	4 : 0.01	h : 0.01	6 : 0.01	b : 0.01	
f : 0.17	e : 0.15	d : 0.12	c : 0.12	g : 0.10	2 : 0.08	= : 0.06	i : 0.06	4 : 0.01	] : 0.01	3 : 0.01	h : 0.01	6 : 0.01	b : 0.01	
e : 0.12	g : 0.12	f : 0.12	c : 0.12	] : 0.12	= : 0.06	d : 0.06	i : 0.06	2 : 0.03	4 : 0.03	3 : 0.03	6 : 0.03	8 : 0.01	a : 0.01	h : 0.01	
e : 0.17	c : 0.15	d : 0.13	g : 0.08	f : 0.08	= : 0.06	i : 0.06	3 : 0.05	: : 0.03	4 : 0.03	6 : 0.03	h : 0.03	8 : 0.01	2 : 0.01	
e : 0.15	d : 0.13	c : 0.12	f : 0.08	= : 0.06	2 : 0.06	i : 0.06	3 : 0.05	g : 0.05	] : 0.05	: : 0.03	4 : 0.03	6 : 0.03	8 : 0.01	h : 0.01	
d : 0.17	e : 0.15	2 : 0.10	c : 0.10	= : 0.06	g : 0.06	3 : 0.05	f : 0.05	i : 0.05	4 : 0.03	] : 0.03	b : 0.03	8 : 0.01	F : 0.01	6 : 0.01	h : 0.01	

#score	1343.8126386547524
#seq	58
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_transcript_m1_run1.txt

#BEAR
eedddd!!dddduuuuuuuuuuuudddd4444dddd	chr17:79373211-79373482(+)$1	271	95	131	23.0382
:gggggggyyyyyyyyyyyyyyyygggggggFFFFF	chr4:144448907-144449155(+)$1	248	10	46	20.6343
iiiiigggggggwwwwwwwwwwwwwwgggggggeee	chr7:26230678-26230944(-)$1	266	36	72	24.6008
!gggggggyyyyyyyyyyyyyyyyggggggg]dddd	chr17:48829442-48829706(+)$1	264	40	76	23.7370
[ccc!!ffffff^^^^^^^^^^^^^^^^^^^^^^^^	chr12:112443323-112443622(-)$1	299	20	56	22.6525
eeee"""ccc[avvvvvvvvvvvvvaccc22eeeee	chr2:61463061-61463313(-)$1	252	23	59	23.2582
ddddgggggggvvvvvvvvvvvvvggggggghhhhh	chrX:13337380-13337648(+)$1	268	101	137	21.7246
d[ddddgggggggtttttttttttggggggg]dddd	chr16:2809855-2810076(+)$1	221	44	80	20.3460
ddd"""ccc[bbuuuuuuuuuuuubb]ccc]dddd:	chr11:62430667-62430919(-)$1	252	140	176	22.6287
ccc"""ffffffwwwwwwwwwwwwwwffffff22cc	chr12:57909768-57910046(+)$1	278	14	50	23.8759
b!!bb[ffffffuuuuuuuuuuuuffffffbb22bb	chr18:33605495-33605781(-)$1	286	232	268	22.0512
ddd"""eeeeexxxxxxxxxxxxxxxeeeee]dddd	chr11:9304994-9305248(-)$1	254	209	245	22.0345
cc$$$$$eeeeeuuuuuuuuuuuueeeee333ccc:	chr6:42602971-42603211(+)$1	240	137	173	22.7523
d$$$$$ffffffwwwwwwwwwwwwwwffffff5555	chr5:145523760-145524017(-)$1	257	54	90	20.0549
d[eeeee!!ccctttttttttttccc]eeeeedddd	chr11:43467372-43467622(+)$1	250	44	80	20.2325
ggggggg^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr7:50793588-50793841(-)$1	253	72	108	23.1043
iiiiiiiii[bb^^^^^^^^^^^^^^^^^^bb]iii	chr7:148516021-148516267(-)$1	246	189	225	22.2860
ddd!!ggggggg^^^^^^^^^^^^^^^^^^^^^^^^	chr1:22050447-22050710(-)$1	263	154	190	23.0039
dddd####dddduuuuuuuuuuuuddddddddccc7	chr2:32429558-32429812(+)$1	254	131	167	22.1121
###dddd^^^^^^^^^^^^^^^^^^dddd333eeee	chr12:62742894-62743141(+)$1	247	111	147	20.6152
$$dddd[eeeeeuuuuuuuuuuuueeeee]dddd==	chr15:25584269-25584528(-)$1	259	59	95	22.3879
[bb[aggggggguuuuuuuuuuuuggggggg]a]bb	chr9:134015827-134016074(+)$1	247	6	42	23.6180
=======eeeeeyyyyyyyyyyyyyyyyeeeee]==	chr15:64041840-64042098(-)$1	258	147	183	24.8379
==========^^^^^^^^^^^^^^^^^^^^^^====	chr11:62620486-62620698(-)$1	212	40	76	24.3157
dddd!!ffffffuuuuuuuuuuuuffffff22dddd	chr7:119356295-119356585(-)$1	290	87	123	23.2775
gggggggggggg^^^^^^^^^^^^^^^^^^^^^^gg	chr2:118853881-118854149(+)$1	268	195	231	23.0600
ffff"""ddddxxxxxxxxxxxxxxxdddd]fffff	chr14:21737263-21737550(-)$1	287	148	184	20.6723
dd####dddd[auuuuuuuuuuuua]dddd22dddd	chr7:98528137-98528398(+)$1	261	65	101	23.4860
cc!!gggggggwwwwwwwwwwwwwwggggggg22cc	chr5:150121569-150121822(-)$1	253	64	100	24.6525
$$ffffffyyyyyyyyyyyyyyyyffffff333ggg	chr8:8861472-8861727(+)$1	255	208	244	22.6403
ffff[a!!dddduuuuuuuuuuuuddddaffffff2	chr5:64859505-64859763(+)$1	258	67	103	21.9659
"dddd[bb!!bbuuuuuuuuuuuubb22bb333ddd	chr1:153719637-153719919(+)$1	282	100	136	22.6324
bb[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:99197899-99198242(+)$1	343	59	95	21.8269
b[==========^^^^^^^^^^^^^^^^^^^^^^^^	chr4:77996923-77997143(-)$1	220	34	70	23.4291
============uuuuuuuuuuuu============	chr12:121248549-121248802(-)$1	253	28	64	25.7351
ggggggffffffuuuuuuuuuuuuffffff333ggg	chr19:14522018-14522264(-)$1	246	43	79	24.3013
!!ccc[ddddxxxxxxxxxxxxxxxdddd]ccc22b	chr6:109697169-109697418(-)$1	249	169	205	21.0511
dddbb!!eeeeeuuuuuuuuuuuueeeee22bb333	chr7:32919409-32919664(-)$1	255	37	73	22.8251
iii!!ggggggg^^^^^^^^^^^^^^^^^^^^^^^g	chr1:32636782-32637041(+)$1	259	17	53	23.4720
iiiiiiiii^^^^^^^^^^^^^^^^^^^^^^^^^ii	chr11:130014462-130014721(+)$1	259	149	185	23.9221
ee"""ggggggguuuuuuuuuuuuggggggg333ee	chr7:156994287-156994584(+)$1	297	255	291	24.8737
ggggggg^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr4:169923204-169923466(-)$1	262	76	112	23.1043
iiiiiiiii^^^^^^^^^^^^^^^^^^^^iiiiiii	chr9:72349032-72349281(-)$1	249	80	116	23.3794
hhhhhgggggggvvvvvvvvvvvvvggggggg22hh	chr3:195791123-195791366(-)$1	243	79	115	22.4590
bb[dddd[ddddwwwwwwwwwwwwwwdddd]dddd]	chr12:123641323-123641572(-)$1	249	165	201	22.1139
ggggggg[cccxxxxxxxxxxxxxxxccc]gggggg	chr18:55226356-55226628(-)$1	272	0	36	23.0541
::==========uuuuuuuuuuuu==========:G	chr7:63372841-63373074(+)$1	233	1	37	22.0267
hhhhhhh[ddddvvvvvvvvvvvvvdddd]hhhhhh	chr13:95860333-95860596(-)$1	263	192	228	20.0654
"""bb[cccyyyyyyyyyyyyyyyyccc]bb333dd	chr7:131163275-131163531(+)$1	256	75	111	24.1085
[dddd!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr6:32086509-32086769(-)$1	260	169	205	22.3756
========[cccwwwwwwwwwwwwwwccc=======	chr3:183705344-183705641(-)$1	297	236	272	25.7320
ggggggg^^^^^^^^^^^^^^^^^^^^ggggggg55	chr18:9924134-9924411(+)$1	277	29	65	20.9506
iiiiiiiiibb^^^^^^^^^^^^^^^^^^^^^^^^^	chr9:86585685-86585935(-)$1	250	174	210	23.2382
ccc####fffffftttttttttttffffff22ccc]	chr11:47843214-47843492(-)$1	278	140	176	20.6495
ddd[eeeeeccctttttttttttccc22eeeeeddd	chr2:187511244-187511547(+)$1	303	252	288	19.7900
:iiiiiiiiiwwwwwwwwwwwwwwiiiiiiiii:CC	chr2:62112074-62112327(-)$1	253	72	108	20.0736
dddd[ffffffxxxxxxxxxxxxxxxffffff22dd	chr19:34922070-34922335(+)$1	265	17	53	21.4611
==========cccssssssssssccc]=========	chr2:113410374-113410601(+)$1	227	113	149	17.9914
======"""cccyyyyyyyyyyyyyyyyccc22===	chr3:43743598-43743838(+)$1	240	108	144	25.5187

#otherMatches

#Seq PSSM
GUGUCUCCUCUGCUUUUGCCUCCACAGACCAUGGAC	chr17:79373211-79373482(+)$1	271	95	131	23.0382
UUUAGUAUUCCCACCUCUUUUUAUAUACUAGAUUAC	chr4:144448907-144449155(+)$1	248	10	46	20.6343
CUCAAGAGAAUAAUUUUUAUAAACCCUGUUUUCCAA	chr7:26230678-26230944(-)$1	266	36	72	24.6008
UGGGCCAACACUUUCUCAUAAAAAUUGGCCUUUUAC	chr17:48829442-48829706(+)$1	264	40	76	23.7370
UGAACUCUAGUAUUUGUCUCUUCUGUUACCUAUUCU	chr12:112443323-112443622(-)$1	299	20	56	22.6525
AAAUAUAUGAACUUUAAAUAAUUCUGUCAAAAUUUA	chr2:61463061-61463313(-)$1	252	23	59	23.2582
AGUUUUGGUGUAUCCAUCUCUUCGACACUGAUGAUC	chrX:13337380-13337648(+)$1	268	101	137	21.7246
CUGCCAGAAUAGGGGGGGUGGUGGUUUGUUCGUGGU	chr16:2809855-2810076(+)$1	221	44	80	20.3460
UGUCAGGGAAGAAGCGCAGAAAACUCCUCCAGCAGA	chr11:62430667-62430919(-)$1	252	140	176	22.6287
GCUAAAGGCUGUGCCCUCGCUCCACAACAGCCACAG	chr12:57909768-57910046(+)$1	278	14	50	23.8759
UCUCAUGUUUUUGAAAAUUGAAGAGAAGACUGUAAC	chr18:33605495-33605781(-)$1	286	232	268	22.0512
AUGAUCUUGGCUGUUCUUUCUAUUCUGCCAGCCAUC	chr11:9304994-9305248(-)$1	254	209	245	22.0345
AACAACUAUUAUUUUCAUUCAUAUAUAAUUUUUUCA	chr6:42602971-42603211(+)$1	240	137	173	22.7523
ACAAAAAAAGUGAACCAGUAAAGAUACACUUUGUCU	chr5:145523760-145524017(-)$1	257	54	90	20.0549
ccauuguagauuuucuaagaacUAAUaauaaugcuu	chr11:43467372-43467622(+)$1	250	44	80	20.2325
UUCUGGAUGUGUuauuuuuucuauuucuuuuuucca	chr7:50793588-50793841(-)$1	253	72	108	23.1043
CUGCAGAAGGUAUCCUAUUUUUAAGCAAUUUGGUUU	chr7:148516021-148516267(-)$1	246	189	225	22.2860
CAAAAGUGGUUGGAUGAAUCAACACCUACCAAACCU	chr1:22050447-22050710(-)$1	263	154	190	23.0039
AUAGCUAUUGCCUUGAUGACAUUUGGCACUAUGUAU	chr2:32429558-32429812(+)$1	254	131	167	22.1121
CCAGGUGCAUCCAAUUUUUCAACUUUACCAAAGAUC	chr12:62742894-62743141(+)$1	247	111	147	20.6152
UUAAUUCUAAGUGUAUUUCCCAUGACUUACAGUUUU	chr15:25584269-25584528(-)$1	259	59	95	22.3879
UGAGUCCCUUAAACCCUCUUCAUGUUGAGGGCAGUC	chr9:134015827-134016074(+)$1	247	6	42	23.6180
UCUUCAGAAGCUACUGCUUUGAGACCCAAGCUUAUU	chr15:64041840-64042098(-)$1	258	147	183	24.8379
UUGAGAGAUUGUAAAAUGUGACAUAGAAUGAAAGUC	chr11:62620486-62620698(-)$1	212	40	76	24.3157
aaaguagauauguuuucauuuauuuauguccucuuu	chr7:119356295-119356585(-)$1	290	87	123	23.2775
AGCUGGGAAGCCUUUCCAUUUUUUUUUUUUUAACGG	chr2:118853881-118854149(+)$1	268	195	231	23.0600
GGGGUGUGGGAGAGAAGAUGUGGGAAUCCUUCCCCC	chr14:21737263-21737550(-)$1	287	148	184	20.6723
aaaaaaacaagaaUUGCAGUAACGUGUUGUGGUUUG	chr7:98528137-98528398(+)$1	261	65	101	23.4860
CAUUAUGAAAGUCUUGUUUAAUAUUCUUUUAUUUUG	chr5:150121569-150121822(-)$1	253	64	100	24.6525
UUGCAAUUAUCUUUCUCCUUCUAAGGUUGUUAUUUC	chr8:8861472-8861727(+)$1	255	208	244	22.6403
UAAAACUAACAUUUUCCUAUUCUUAUGUGUUUGGCU	chr5:64859505-64859763(+)$1	258	67	103	21.9659
UUCCCUCUUUCCUUUAGUUGGUGUGGUUGGUACGGG	chr1:153719637-153719919(+)$1	282	100	136	22.6324
GCAUGUGucuucuuuuuuucuuuauuuucuuuccuu	chr2:99197899-99198242(+)$1	343	59	95	21.8269
GCAGCGCCUCUGUCUCGCUUUUUCUUAUUUUUCCCC	chr4:77996923-77997143(-)$1	220	34	70	23.4291
UGGGGUUUAUAGAAcuccauuagacuguaagcucca	chr12:121248549-121248802(-)$1	253	28	64	25.7351
GGGGCAGCUGCCUUUGAGGUUUGCGGUGGUUUUUGC	chr19:14522018-14522264(-)$1	246	43	79	24.3013
UUUCCUUCAGUAUUUUUAAGCUUUCUUGAUGGAUUA	chr6:109697169-109697418(-)$1	249	169	205	21.0511
GCUGCCAUUUUAAACGUUAUAUUCUAAAACCGUACU	chr7:32919409-32919664(-)$1	255	37	73	22.8251
GGACUAAGGUAAUCAAUUUGCACCuuuuuuuauuuu	chr1:32636782-32637041(+)$1	259	17	53	23.4720
CACAGAUUAAACUUCACCUACAAACUCCUUAAUAUG	chr11:130014462-130014721(+)$1	259	149	185	23.9221
GGAAGUGGCAGCCUAAUCAAAAAUGUUGCCAGAACC	chr7:156994287-156994584(+)$1	297	255	291	24.8737
GCuuuuuuuuuuuuuuuuuuuuuuuuuGUCCUAGGA	chr4:169923204-169923466(-)$1	262	76	112	23.1043
uuuuuuuuuuuuuuuuuuuuuuuuuuuACAGGAAAG	chr9:72349032-72349281(-)$1	249	80	116	23.3794
UAGUUGGGGCCCAGAGAGAUGCAUGGGGCCCUGGAG	chr3:195791123-195791366(-)$1	243	79	115	22.4590
GUUCGCAUGACGCUAAAGAAAUUCCAUGUUUUGCGC	chr12:123641323-123641572(-)$1	249	165	201	22.1139
CUGGACUGUUUGCAAUUUUUUAAAAAAGAGAGUUCG	chr18:55226356-55226628(-)$1	272	0	36	23.0541
gaguuuugucugauucagggacuacagacagaacca	chr7:63372841-63373074(+)$1	233	1	37	22.0267
ucagcagauauuacaaauucuccaaaauacuuguug	chr13:95860333-95860596(-)$1	263	192	228	20.0654
CuucuuuuuuuuuuuuuuuuuuuuuAAACAGUUUCA	chr7:131163275-131163531(+)$1	256	75	111	24.1085
GCAUCAUGGUCUUCCUUCUCUUCAUUGCCUUCAACU	chr6:32086509-32086769(-)$1	260	169	205	22.3756
UGGCAACAGCUGGAAGGAUGAAAGGGCAGUGUUGCC	chr3:183705344-183705641(-)$1	297	236	272	25.7320
AAACUUUAGAUCUAAAUAAUAAAAAAAAAAGUUUGU	chr18:9924134-9924411(+)$1	277	29	65	20.9506
GAACUUACUGCUCAUUAUUUAAAUCAGAUUAUUCCU	chr9:86585685-86585935(-)$1	250	174	210	23.2382
UUAACUUCCACGGAUAUCUGGGCCCUGUGGCAUGAU	chr11:47843214-47843492(-)$1	278	140	176	20.6495
CAGUCCCAUCUCAAAUCCUUGAAGGGCAGUGGGCUG	chr2:187511244-187511547(+)$1	303	252	288	19.7900
aaaaaaaaaGUUCUAAUUUGUUUUCUUUUUUUUCCC	chr2:62112074-62112327(-)$1	253	72	108	20.0736
aagucagguugguuuuucucuCAUAACAACCUUUAC	chr19:34922070-34922335(+)$1	265	17	53	21.4611
GCUGGCCUGCGCCCAUUUCAGAAGGCUGCAGGCUAG	chr2:113410374-113410601(+)$1	227	113	149	17.9914
GUGUGCCUUGCACAUACAAAAAAGAACCUGUUCGUA	chr3:43743598-43743838(+)$1	240	108	144	25.5187

#DB
))((((..((((............))))....))))	chr17:79373211-79373482(+)$1	1	95	131	23.0382
.(((((((................)))))))(((((	chr4:144448907-144449155(+)$1	1	10	46	20.6343
)))))(((((((..............)))))))(((	chr7:26230678-26230944(-)$1	1	36	72	24.6008
.(((((((................))))))).))))	chr17:48829442-48829706(+)$1	1	40	76	23.7370
.(((..((((((........................	chr12:112443323-112443622(-)$1	1	20	56	22.6525
((((...(((.(.............))))..)))))	chr2:61463061-61463313(-)$1	1	23	59	23.2582
))))(((((((.............)))))))(((((	chrX:13337380-13337648(+)$1	1	101	137	21.7246
(.(((((((((((...........))))))).))))	chr16:2809855-2810076(+)$1	1	44	80	20.3460
(((...(((.((............)).))).)))).	chr11:62430667-62430919(-)$1	1	140	176	22.6287
(((...((((((..............))))))..))	chr12:57909768-57910046(+)$1	1	14	50	23.8759
(..((.((((((............))))))))..))	chr18:33605495-33605781(-)$1	1	232	268	22.0512
(((...(((((...............))))).))))	chr11:9304994-9305248(-)$1	1	209	245	22.0345
((.....(((((............)))))...))).	chr6:42602971-42603211(+)$1	1	137	173	22.7523
(.....((((((..............))))))....	chr5:145523760-145524017(-)$1	1	54	90	20.0549
(.(((((..(((...........))).)))))))))	chr11:43467372-43467622(+)$1	1	44	80	20.2325
(((((((.........................))))	chr7:50793588-50793841(-)$1	1	72	108	23.1043
(((((((((.((..................)).)))	chr7:148516021-148516267(-)$1	1	189	225	22.2860
(((..(((((((........................	chr1:22050447-22050710(-)$1	1	154	190	23.0039
((((....((((............))))))))))).	chr2:32429558-32429812(+)$1	1	131	167	22.1121
...((((..................))))...))))	chr12:62742894-62743141(+)$1	1	111	147	20.6152
..((((.(((((............))))).))))))	chr15:25584269-25584528(-)$1	1	59	95	22.3879
.((.((((((((............))))))).).))	chr9:134015827-134016074(+)$1	1	6	42	23.6180
((((((((((((................))))).))	chr15:64041840-64042098(-)$1	1	147	183	24.8379
((((((((((......................))))	chr11:62620486-62620698(-)$1	1	40	76	24.3157
((((..((((((............))))))..))))	chr7:119356295-119356585(-)$1	1	87	123	23.2775
)))))(((((((......................))	chr2:118853881-118854149(+)$1	1	195	231	23.0600
((((...((((...............)))).)))))	chr14:21737263-21737550(-)$1	1	148	184	20.6723
((....((((.(............).))))..))))	chr7:98528137-98528398(+)$1	1	65	101	23.4860
((..(((((((..............)))))))..))	chr5:150121569-150121822(-)$1	1	64	100	24.6525
..((((((................))))))...)))	chr8:8861472-8861727(+)$1	1	208	244	22.6403
((((.(..((((............))))))))))).	chr5:64859505-64859763(+)$1	1	67	103	21.9659
.((((.((..((............))..))...)))	chr1:153719637-153719919(+)$1	1	100	136	22.6324
((.((((.............................	chr2:99197899-99198242(+)$1	1	59	95	21.8269
(.((((((((((........................	chr4:77996923-77997143(-)$1	1	34	70	23.4291
((((((((((((............))))))))))))	chr12:121248549-121248802(-)$1	1	28	64	25.7351
((((((((((((............))))))...)))	chr19:14522018-14522264(-)$1	1	43	79	24.3013
..(((.((((...............)))).)))..)	chr6:109697169-109697418(-)$1	1	169	205	21.0511
(((((..(((((............)))))..))...	chr7:32919409-32919664(-)$1	1	37	73	22.8251
(((..(((((((.......................)	chr1:32636782-32637041(+)$1	1	17	53	23.4720
(((((((((.........................))	chr11:130014462-130014721(+)$1	1	149	185	23.9221
((...(((((((............)))))))...))	chr7:156994287-156994584(+)$1	1	255	291	24.8737
(((((((.........................))))	chr4:169923204-169923466(-)$1	1	76	112	23.1043
(((((((((....................)))))))	chr9:72349032-72349281(-)$1	1	80	116	23.3794
((((((((((((.............)))))))..))	chr3:195791123-195791366(-)$1	1	79	115	22.4590
((.((((.((((..............)))).)))).	chr12:123641323-123641572(-)$1	1	165	201	22.1139
(((((((.(((...............))).))))))	chr18:55226356-55226628(-)$1	1	0	36	23.0541
..((((((((((............)))))))))).(	chr7:63372841-63373074(+)$1	1	1	37	22.0267
(((((((.((((.............)))).))))))	chr13:95860333-95860596(-)$1	1	192	228	20.0654
...((.(((................))).))...))	chr7:131163275-131163531(+)$1	1	75	111	24.1085
.((((..(((((........................	chr6:32086509-32086769(-)$1	1	169	205	22.3756
((((((((.(((..............))))))))))	chr3:183705344-183705641(-)$1	1	236	272	25.7320
(((((((....................)))))))..	chr18:9924134-9924411(+)$1	1	29	65	20.9506
)))))))))((.........................	chr9:86585685-86585935(-)$1	1	174	210	23.2382
(((....((((((...........))))))..))).	chr11:47843214-47843492(-)$1	1	140	176	20.6495
(((.((((((((...........)))..))))))))	chr2:187511244-187511547(+)$1	1	252	288	19.7900
.(((((((((..............))))))))).))	chr2:62112074-62112327(-)$1	1	72	108	20.0736
((((.((((((...............))))))..))	chr19:34922070-34922335(+)$1	1	17	53	21.4611
(((((((((((((..........))).)))))))))	chr2:113410374-113410601(+)$1	1	113	149	17.9914
((((((...(((................)))..)))	chr3:43743598-43743838(+)$1	1	108	144	25.5187

#PSSM
d : 0.22	i : 0.10	g : 0.10	= : 0.10	c : 0.06	b : 0.06	e : 0.05	: : 0.05	[ : 0.05	! : 0.03	$ : 0.03	f : 0.03	" : 0.03	h : 0.03	# : 0.01	
d : 0.20	g : 0.13	i : 0.11	= : 0.10	c : 0.08	e : 0.05	[ : 0.05	$ : 0.05	b : 0.05	! : 0.03	f : 0.03	h : 0.03	# : 0.01	: : 0.01	" : 0.01	
d : 0.23	g : 0.13	= : 0.13	i : 0.11	c : 0.06	f : 0.05	e : 0.03	! : 0.03	$ : 0.03	# : 0.03	[ : 0.03	" : 0.03	h : 0.03	b : 0.01	
d : 0.20	g : 0.13	= : 0.13	i : 0.10	" : 0.06	b : 0.05	! : 0.05	f : 0.05	c : 0.03	e : 0.03	$ : 0.03	[ : 0.03	# : 0.03	h : 0.03	
g : 0.16	d : 0.13	= : 0.13	i : 0.10	" : 0.10	! : 0.06	b : 0.05	# : 0.05	$ : 0.03	e : 0.03	[ : 0.03	h : 0.03	a : 0.01	f : 0.01	c : 0.01	
g : 0.27	= : 0.13	d : 0.10	" : 0.08	i : 0.08	! : 0.06	[ : 0.06	# : 0.05	$ : 0.03	e : 0.03	f : 0.03	a : 0.01	h : 0.01	
g : 0.27	f : 0.13	= : 0.11	i : 0.08	d : 0.08	! : 0.06	" : 0.05	e : 0.05	c : 0.03	# : 0.03	$ : 0.01	[ : 0.01	b : 0.01	h : 0.01	
g : 0.20	f : 0.15	e : 0.11	= : 0.10	^ : 0.08	i : 0.08	! : 0.05	c : 0.05	d : 0.05	[ : 0.05	# : 0.01	b : 0.01	" : 0.01	
g : 0.16	d : 0.13	f : 0.13	e : 0.11	^ : 0.08	i : 0.08	= : 0.08	c : 0.06	y : 0.05	! : 0.03	[ : 0.01	" : 0.01	
g : 0.16	d : 0.13	f : 0.13	^ : 0.11	c : 0.10	e : 0.10	= : 0.08	y : 0.06	[ : 0.03	! : 0.01	b : 0.01	i : 0.01	
g : 0.16	f : 0.13	^ : 0.13	d : 0.10	e : 0.10	c : 0.10	y : 0.06	b : 0.06	= : 0.05	[ : 0.03	x : 0.01	w : 0.01	
^ : 0.15	g : 0.13	f : 0.11	d : 0.08	x : 0.08	e : 0.08	c : 0.08	y : 0.06	b : 0.05	= : 0.05	a : 0.03	w : 0.03	v : 0.01	
u : 0.27	^ : 0.27	w : 0.11	y : 0.10	x : 0.08	v : 0.06	t : 0.03	g : 0.01	f : 0.01	c : 0.01	
u : 0.27	^ : 0.27	w : 0.11	y : 0.10	x : 0.08	v : 0.06	t : 0.06	s : 0.01	
u : 0.27	^ : 0.27	w : 0.11	y : 0.10	x : 0.08	v : 0.06	t : 0.06	s : 0.01	
u : 0.27	^ : 0.27	w : 0.11	y : 0.10	x : 0.08	v : 0.06	t : 0.06	s : 0.01	
u : 0.27	^ : 0.27	w : 0.11	y : 0.10	x : 0.08	v : 0.06	t : 0.06	s : 0.01	
u : 0.27	^ : 0.27	w : 0.11	y : 0.10	x : 0.08	v : 0.06	t : 0.06	s : 0.01	
u : 0.27	^ : 0.27	w : 0.11	y : 0.10	x : 0.08	v : 0.06	t : 0.06	s : 0.01	
u : 0.27	^ : 0.27	w : 0.11	y : 0.10	x : 0.08	v : 0.06	t : 0.06	s : 0.01	
u : 0.27	^ : 0.27	w : 0.11	y : 0.10	x : 0.08	v : 0.06	t : 0.06	s : 0.01	
u : 0.27	^ : 0.27	w : 0.11	y : 0.10	x : 0.08	v : 0.06	t : 0.06	s : 0.01	
u : 0.27	^ : 0.27	w : 0.11	y : 0.10	x : 0.08	v : 0.06	t : 0.06	s : 0.01	
u : 0.27	^ : 0.27	w : 0.11	y : 0.10	x : 0.08	v : 0.06	c : 0.05	t : 0.03	
^ : 0.27	g : 0.10	w : 0.10	f : 0.08	x : 0.08	d : 0.05	v : 0.05	e : 0.05	c : 0.05	y : 0.05	b : 0.03	= : 0.03	a : 0.01	i : 0.01	
^ : 0.25	g : 0.13	d : 0.10	w : 0.08	f : 0.08	x : 0.06	c : 0.06	e : 0.05	b : 0.03	y : 0.03	= : 0.03	a : 0.01	] : 0.01	i : 0.01	
^ : 0.25	d : 0.15	g : 0.15	f : 0.13	c : 0.06	e : 0.06	] : 0.05	y : 0.03	2 : 0.03	= : 0.03	i : 0.01	
^ : 0.23	g : 0.16	d : 0.15	f : 0.13	c : 0.08	e : 0.08	= : 0.05	y : 0.03	2 : 0.03	i : 0.01	
^ : 0.23	g : 0.16	f : 0.13	e : 0.11	d : 0.11	c : 0.08	= : 0.05	4 : 0.01	a : 0.01	b : 0.01	] : 0.01	i : 0.01	
^ : 0.22	g : 0.16	f : 0.15	e : 0.06	d : 0.06	] : 0.06	= : 0.06	2 : 0.03	c : 0.03	3 : 0.03	b : 0.03	i : 0.03	4 : 0.01	
^ : 0.20	g : 0.18	2 : 0.08	3 : 0.08	f : 0.06	e : 0.06	= : 0.06	] : 0.05	b : 0.05	d : 0.03	c : 0.03	i : 0.03	4 : 0.01	h : 0.01	
^ : 0.20	3 : 0.11	g : 0.08	f : 0.08	] : 0.06	e : 0.06	d : 0.06	2 : 0.06	= : 0.06	b : 0.05	h : 0.03	i : 0.03	4 : 0.01	F : 0.01	c : 0.01	
d : 0.16	^ : 0.15	2 : 0.10	g : 0.08	= : 0.08	3 : 0.08	e : 0.06	c : 0.06	h : 0.03	f : 0.03	i : 0.03	F : 0.01	5 : 0.01	] : 0.01	a : 0.01	b : 0.01	
d : 0.20	^ : 0.15	2 : 0.10	g : 0.10	= : 0.10	e : 0.05	c : 0.05	3 : 0.05	h : 0.03	i : 0.03	] : 0.03	f : 0.03	F : 0.01	5 : 0.01	: : 0.01	
d : 0.22	^ : 0.11	= : 0.11	g : 0.10	c : 0.08	e : 0.06	h : 0.05	i : 0.05	b : 0.03	5 : 0.03	f : 0.03	F : 0.01	2 : 0.01	3 : 0.01	: : 0.01	C : 0.01	
d : 0.18	g : 0.11	= : 0.11	^ : 0.10	e : 0.06	h : 0.05	b : 0.05	i : 0.05	: : 0.03	c : 0.03	5 : 0.03	] : 0.03	F : 0.01	7 : 0.01	f : 0.01	2 : 0.01	3 : 0.01	G : 0.01	C : 0.01	

#score	1331.820613808315
#seq	59
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_CDS_m3_run1.txt

#BEAR
a55555eeeee4444bb22a4444ffffff22ffffff]d	chrM:14203-14413(-)$1	210	82	122	48.9374
a55555eeeee4444bb22a4444ffffff22ffffff]d	chrM:14218-14422(-)$1	204	91	131	48.9374
a55555eeeee4444bb22a4444ffffff22ffffff]d	chrM:14232-14441(-)$1	209	110	150	48.9374
a55555eeeee4444bb22a4444ffffff22ffffff]d	chrM:14213-14418(-)$1	205	87	127	48.9374
a55555eeeee4444bb22a4444ffffff22ffffff]d	chrM:14247-14449(-)$1	202	118	158	48.9374
a55555eeeee4444bb22a4444ffffff22ffffff]d	chrM:14249-14466(-)$1	217	135	175	48.9374
a55555eeeee4444bb22a4444ffffff22ffffff]d	chrM:14270-14498(-)$1	228	167	207	48.9374
a55555eeeee4444bb22a4444ffffff22ffffff]d	chrM:14241-14447(-)$1	206	116	156	48.9374
a55555eeeee4444bb22a4444ffffff22ffffff]d	chrM:14222-14432(-)$1	210	101	141	48.9374

#otherMatches

#Seq PSSM
UGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGA	chrM:14203-14413(-)$1	210	82	122	48.9374
UGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGA	chrM:14218-14422(-)$1	204	91	131	48.9374
UGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGA	chrM:14232-14441(-)$1	209	110	150	48.9374
UGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGA	chrM:14213-14418(-)$1	205	87	127	48.9374
UGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGA	chrM:14247-14449(-)$1	202	118	158	48.9374
UGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGA	chrM:14249-14466(-)$1	217	135	175	48.9374
UGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGA	chrM:14270-14498(-)$1	228	167	207	48.9374
UGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGA	chrM:14241-14447(-)$1	206	116	156	48.9374
UGGUAAACUUUAAUAGUGUAGGAAGCUGAAUAAUUUAUGA	chrM:14222-14432(-)$1	210	101	141	48.9374

#DB
).....)))))....))..)....))))))..)))))).)	chrM:14203-14413(-)$1	1	82	122	48.9374
).....)))))....))..)....))))))..)))))).)	chrM:14218-14422(-)$1	1	91	131	48.9374
).....)))))....))..)....))))))..)))))).)	chrM:14232-14441(-)$1	1	110	150	48.9374
).....)))))....))..)....))))))..)))))).)	chrM:14213-14418(-)$1	1	87	127	48.9374
).....)))))....))..)....))))))..)))))).)	chrM:14247-14449(-)$1	1	118	158	48.9374
).....)))))....))..)....))))))..)))))).)	chrM:14249-14466(-)$1	1	135	175	48.9374
).....)))))....))..)....))))))..)))))).)	chrM:14270-14498(-)$1	1	167	207	48.9374
).....)))))....))..)....))))))..)))))).)	chrM:14241-14447(-)$1	1	116	156	48.9374
).....)))))....))..)....))))))..)))))).)	chrM:14222-14432(-)$1	1	101	141	48.9374

#PSSM
a : 1.00	
5 : 1.00	
5 : 1.00	
5 : 1.00	
5 : 1.00	
5 : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
b : 1.00	
b : 1.00	
2 : 1.00	
2 : 1.00	
a : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
2 : 1.00	
2 : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
] : 1.00	
d : 1.00	

#score	440.43712217550024
#seq	9
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_UTR_m2_run1.txt

#BEAR
ddoooooodddd	chr9:123202110-123202419(-)$1	309	33	45	11.3052
[aooooooa]dd	chr19:49993184-49993404(+)$1	220	90	102	10.0654
ddoooooodddd	chr1:19430996-19431330(-)$1	334	176	188	11.3052
ddoooooodddd	chr19:49141247-49141524(-)$1	277	128	140	11.3052
ddoooooodddd	chr19:15512258-15512572(-)$1	314	209	221	11.3052
eeooooooeeee	chr11:57193206-57193459(-)$1	253	61	73	9.7690
eeooooooeeee	chr17:42457867-42458185(-)$1	318	197	209	9.7690
ccooooooccc]	chr20:60709048-60709325(+)$1	277	52	64	9.8372
ccooooooccc3	chr7:150774381-150774657(-)$1	276	26	38	9.8040
ccooooooccc4	chrX:153279616-153279877(-)$1	261	67	79	9.8526
ddoooooodddd	chr1:155650066-155650322(-)$1	256	52	64	11.3052
ccooooooccc]	chr4:1359969-1360239(+)$1	270	123	135	9.8372
ddoooooodddd	chr2:192550216-192550512(+)$1	296	129	141	11.3052
ddoooooodddd	chr19:2270187-2270447(+)$1	260	95	107	11.3052
eeooooooeeee	chr9:139562549-139562798(+)$1	249	171	183	9.7690
ddoooooodddd	chr19:54972073-54972282(+)$1	209	146	158	11.3052
iiooooooiiii	chr4:10117690-10118007(-)$1	317	231	243	9.3192
ddoooooodddd	chr8:23425710-23425988(+)$1	278	221	233	11.3052
eeooooooeeee	chr17:79479291-79479565(-)$1	274	254	266	9.7690
dddooooooddd	chr7:1887647-1887894(-)$1	247	234	246	9.3448
iiooooooiiii	chr17:74732454-74732703(-)$1	249	24	36	9.3192
bboooooobbdd	chr20:34214168-34214418(-)$1	250	65	77	8.9916
ddoooooodddd	chr16:20855792-20856087(+)$1	295	144	156	11.3052
ddoooooodddd	chr19:14627693-14627991(-)$1	298	79	91	11.3052
ddoooooodddd	chr10:121336123-121336368(-)$1	245	75	87	11.3052
ddoooooodddd	chr17:76120135-76120380(-)$1	245	121	133	11.3052
ddoooooodddd	chr7:143079198-143079506(+)$1	308	206	218	11.3052
ddoooooodddd	chr17:7126985-7127243(+)$1	258	26	38	11.3052
ddoooooodddd	chr3:41265868-41266121(+)$1	253	130	142	11.3052
[aooooooa]ad	chr16:577711-577990(+)$1	279	109	121	9.6556
ggoooooogggg	chr3:129150291-129150572(-)$1	281	42	54	9.2193
ddoooooodddd	chr9:134360193-134360464(+)$1	271	30	42	11.3052
eeooooooeeee	chr12:125398881-125399141(-)$1	260	178	190	9.7690
ddoooooodddd	chr1:1018238-1018513(-)$1	275	139	151	11.3052
ccooooooccc]	chr2:97535532-97535788(-)$1	256	77	89	9.8372
ddoooooodddd	chr19:54972099-54972340(+)$1	241	120	132	11.3052
ccooooooccc]	chr17:80223533-80223781(-)$1	248	188	200	9.8372
ddoooooodddd	chr3:48575930-48576205(-)$1	275	99	111	11.3052
[aooooooa]cc	chr19:1881775-1882007(-)$1	232	213	225	9.4758
ddoooooodddd	chr8:37976656-37976947(+)$1	291	24	36	11.3052
ccooooooccc2	chr11:122929984-122930187(-)$1	203	37	49	9.6169
ddoooooodddd	chr1:52251325-52251615(+)$1	290	273	285	11.3052
ddoooooodddd	chr17:17716162-17716411(-)$1	249	228	240	11.3052
[aooooooa]ee	chr9:139722213-139722452(+)$1	239	161	173	9.5388
ddoooooodddd	chr11:62397328-62397569(-)$1	241	162	174	11.3052
eeooooooeeee	chr12:56554882-56555138(+)$1	256	182	194	9.7690
ccooooooccc6	chr19:1883189-1883431(-)$1	242	155	167	9.3158
ddoooooodddd	chr12:122237774-122238020(-)$1	246	89	101	11.3052
ddoooooodddd	chr20:62330184-62330436(-)$1	252	64	76	11.3052

#otherMatches

#Seq PSSM
AGGAAAUACUAG	chr9:123202110-123202419(-)$1	309	33	45	11.3052
AGAUCAACCCCA	chr19:49993184-49993404(+)$1	220	90	102	10.0654
GCUCGUCUGCUG	chr1:19430996-19431330(-)$1	334	176	188	11.3052
GGUGUCCCCCAU	chr19:49141247-49141524(-)$1	277	128	140	11.3052
CCUGUACCGGUC	chr19:15512258-15512572(-)$1	314	209	221	11.3052
GGAAGGACUCUG	chr11:57193206-57193459(-)$1	253	61	73	9.7690
CAACCAGGUGGC	chr17:42457867-42458185(-)$1	318	197	209	9.7690
GGGGGUAGCCAG	chr20:60709048-60709325(+)$1	277	52	64	9.8372
GCGCCAAAGCUA	chr7:150774381-150774657(-)$1	276	26	38	9.8040
ACGAUUGAGUGA	chrX:153279616-153279877(-)$1	261	67	79	9.8526
AACAACGUUUGG	chr1:155650066-155650322(-)$1	256	52	64	11.3052
GGUGUUUUUCCA	chr4:1359969-1360239(+)$1	270	123	135	9.8372
CUGAAUCAAGGG	chr2:192550216-192550512(+)$1	296	129	141	11.3052
UGAAUCUGCACU	chr19:2270187-2270447(+)$1	260	95	107	11.3052
UGGAGGCACAGG	chr9:139562549-139562798(+)$1	249	171	183	9.7690
UCCAGGAAGAGC	chr19:54972073-54972282(+)$1	209	146	158	11.3052
GUACACCAAUGG	chr4:10117690-10118007(-)$1	317	231	243	9.3192
GCAAAGGGGCAC	chr8:23425710-23425988(+)$1	278	221	233	11.3052
GACGACGCUCCC	chr17:79479291-79479565(-)$1	274	254	266	9.7690
CUCUGUCAUGAG	chr7:1887647-1887894(-)$1	247	234	246	9.3448
GGAGGACCCCGC	chr17:74732454-74732703(-)$1	249	24	36	9.3192
CUUUGGGCAGCU	chr20:34214168-34214418(-)$1	250	65	77	8.9916
CUUUCCUUGGUU	chr16:20855792-20856087(+)$1	295	144	156	11.3052
UCGAGAGAGAGU	chr19:14627693-14627991(-)$1	298	79	91	11.3052
UUCCCUAAAACA	chr10:121336123-121336368(-)$1	245	75	87	11.3052
GUUGCUUCACCC	chr17:76120135-76120380(-)$1	245	121	133	11.3052
UGCCUUCCCGCC	chr7:143079198-143079506(+)$1	308	206	218	11.3052
UCCAGAUAGAGG	chr17:7126985-7127243(+)$1	258	26	38	11.3052
ACUGUUUCGUAU	chr3:41265868-41266121(+)$1	253	130	142	11.3052
gcgggcaggggc	chr16:577711-577990(+)$1	279	109	121	9.6556
AUCGUAAUGUAC	chr3:129150291-129150572(-)$1	281	42	54	9.2193
UUACAAAGAGGC	chr9:134360193-134360464(+)$1	271	30	42	11.3052
UUGAAUGGAAGA	chr12:125398881-125399141(-)$1	260	178	190	9.7690
GUUUCAGUACGG	chr1:1018238-1018513(-)$1	275	139	151	11.3052
cgggcgagcgcg	chr2:97535532-97535788(-)$1	256	77	89	9.8372
UCCAGGAAGAGC	chr19:54972099-54972340(+)$1	241	120	132	11.3052
GAGCAAAAUCUA	chr17:80223533-80223781(-)$1	248	188	200	9.8372
CCCCGCCUGGCU	chr3:48575930-48576205(-)$1	275	99	111	11.3052
CGGCACGACAUG	chr19:1881775-1882007(-)$1	232	213	225	9.4758
UGGUGUUACACA	chr8:37976656-37976947(+)$1	291	24	36	11.3052
GCAGGCAGGCCC	chr11:122929984-122930187(-)$1	203	37	49	9.6169
GAUUGUACUCUA	chr1:52251325-52251615(+)$1	290	273	285	11.3052
ACAUCCUCGUGU	chr17:17716162-17716411(-)$1	249	228	240	11.3052
GGUGACCUUGAU	chr9:139722213-139722452(+)$1	239	161	173	9.5388
UCUGGAAUGACA	chr11:62397328-62397569(-)$1	241	162	174	11.3052
GGCAUGUUCCCG	chr12:56554882-56555138(+)$1	256	182	194	9.7690
guguccagacau	chr19:1883189-1883431(-)$1	242	155	167	9.3158
UGUGUAUUCGGC	chr12:122237774-122238020(-)$1	246	89	101	11.3052
GGAAAUCCCCUG	chr20:62330184-62330436(-)$1	252	64	76	11.3052

#DB
((......))))	chr9:123202110-123202419(-)$1	1	33	45	11.3052
.(......).))	chr19:49993184-49993404(+)$1	1	90	102	10.0654
((......))))	chr1:19430996-19431330(-)$1	1	176	188	11.3052
((......))))	chr19:49141247-49141524(-)$1	1	128	140	11.3052
((......))))	chr19:15512258-15512572(-)$1	1	209	221	11.3052
((......))))	chr11:57193206-57193459(-)$1	1	61	73	9.7690
((......))))	chr17:42457867-42458185(-)$1	1	197	209	9.7690
((......))).	chr20:60709048-60709325(+)$1	1	52	64	9.8372
((......))).	chr7:150774381-150774657(-)$1	1	26	38	9.8040
((......))).	chrX:153279616-153279877(-)$1	1	67	79	9.8526
((......))))	chr1:155650066-155650322(-)$1	1	52	64	11.3052
((......))).	chr4:1359969-1360239(+)$1	1	123	135	9.8372
((......))))	chr2:192550216-192550512(+)$1	1	129	141	11.3052
((......))))	chr19:2270187-2270447(+)$1	1	95	107	11.3052
((......))))	chr9:139562549-139562798(+)$1	1	171	183	9.7690
((......))))	chr19:54972073-54972282(+)$1	1	146	158	11.3052
((......))))	chr4:10117690-10118007(-)$1	1	231	243	9.3192
((......))))	chr8:23425710-23425988(+)$1	1	221	233	11.3052
((......))))	chr17:79479291-79479565(-)$1	1	254	266	9.7690
(((......)))	chr7:1887647-1887894(-)$1	1	234	246	9.3448
((......))))	chr17:74732454-74732703(-)$1	1	24	36	9.3192
((......))))	chr20:34214168-34214418(-)$1	1	65	77	8.9916
((......))))	chr16:20855792-20856087(+)$1	1	144	156	11.3052
((......))))	chr19:14627693-14627991(-)$1	1	79	91	11.3052
((......))))	chr10:121336123-121336368(-)$1	1	75	87	11.3052
((......))))	chr17:76120135-76120380(-)$1	1	121	133	11.3052
((......))))	chr7:143079198-143079506(+)$1	1	206	218	11.3052
((......))))	chr17:7126985-7127243(+)$1	1	26	38	11.3052
((......))))	chr3:41265868-41266121(+)$1	1	130	142	11.3052
.(......).))	chr16:577711-577990(+)$1	1	109	121	9.6556
((......))))	chr3:129150291-129150572(-)$1	1	42	54	9.2193
((......))))	chr9:134360193-134360464(+)$1	1	30	42	11.3052
((......))))	chr12:125398881-125399141(-)$1	1	178	190	9.7690
((......))))	chr1:1018238-1018513(-)$1	1	139	151	11.3052
((......))).	chr2:97535532-97535788(-)$1	1	77	89	9.8372
((......))))	chr19:54972099-54972340(+)$1	1	120	132	11.3052
((......))).	chr17:80223533-80223781(-)$1	1	188	200	9.8372
((......))))	chr3:48575930-48576205(-)$1	1	99	111	11.3052
.(......).))	chr19:1881775-1882007(-)$1	1	213	225	9.4758
((......))))	chr8:37976656-37976947(+)$1	1	24	36	11.3052
((......))).	chr11:122929984-122930187(-)$1	1	37	49	9.6169
((......))))	chr1:52251325-52251615(+)$1	1	273	285	11.3052
((......))))	chr17:17716162-17716411(-)$1	1	228	240	11.3052
.(......).))	chr9:139722213-139722452(+)$1	1	161	173	9.5388
((......))))	chr11:62397328-62397569(-)$1	1	162	174	11.3052
((......))))	chr12:56554882-56555138(+)$1	1	182	194	9.7690
((......))).	chr19:1883189-1883431(-)$1	1	155	167	9.3158
((......))))	chr12:122237774-122238020(-)$1	1	89	101	11.3052
((......))))	chr20:62330184-62330436(-)$1	1	64	76	11.3052

#PSSM
d : 0.55	c : 0.16	e : 0.12	[ : 0.08	i : 0.04	b : 0.02	g : 0.02	
d : 0.55	c : 0.16	e : 0.12	a : 0.08	i : 0.04	b : 0.02	g : 0.02	
o : 0.97	d : 0.02	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.53	c : 0.16	e : 0.12	a : 0.08	i : 0.04	o : 0.02	b : 0.02	g : 0.02	
d : 0.55	c : 0.16	e : 0.12	] : 0.08	i : 0.04	b : 0.02	g : 0.02	
d : 0.59	c : 0.18	e : 0.14	i : 0.04	a : 0.02	g : 0.02	
d : 0.61	e : 0.14	] : 0.08	i : 0.04	3 : 0.02	4 : 0.02	g : 0.02	c : 0.02	2 : 0.02	6 : 0.02	

#score	515.4190019901631
#seq	49
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_CDS_m2_run1.txt

#BEAR
gggg!!a!!cccmmmmccc22a>>>>>>	chr15:79223714-79223935(-)$1	221	98	126	10.6536
ggggg[ccccccmmmmccc]ccc]gggg	chr11:66114725-66114966(-)$1	241	148	176	10.1602
[dddd####cccmmmmccc4444dddd]	chr19:18499155-18499390(+)$1	235	158	186	12.1555
!a[ccc[eeeeellleeeee4444ccc]	chr1:1152953-1153165(-)$1	212	95	123	11.1289
ffffff!!ddddooooooddddffffff	chr2:216229521-216229728(-)$1	207	0	28	9.0952
!!bb[bb[ddddmmmmdddd]bb]bb22	chr19:17918928-17919243(+)$1	315	258	286	12.1165
eeee[a[ddddnnnnndddd]aeeeee3	chr12:9251102-9251304(-)$1	202	27	55	10.2704
!eeeee[ddddnnnnndddd4444eeee	chr12:3389453-3389744(+)$1	291	35	63	11.2845
eeeee!!a[cccmmmmccca]eeeee]d	chr3:186338421-186338643(+)$1	222	93	121	9.8169
:bb!!cccddddmmmmdddd]ccc]bb:	chr3:126260990-126261260(+)$1	270	114	142	10.8806
eeee"""eeeeemmmmeeeee333eeee	chr5:82849130-82849428(+)$1	298	3	31	12.8199
cc"""bb[ddddmmmmdddd]bb333cc	chrX:132730524-132730727(-)$1	203	111	139	13.6460
hhdddd[eeeeemmmmeeeee333dddd	chr16:16173131-16173384(+)$1	253	8	36	11.3671
ffff[cccddddmmmmdddd4444ccc]	chr6:43480397-43480655(-)$1	258	42	70	14.8283
bb####a[ddddmmmmdddd]a]bb]bb	chr19:18499315-18499521(+)$1	206	94	122	12.9810
:ccc"""ddddnnnnndddd333ccc::	chr4:39448231-39448517(+)$1	286	185	213	10.2299
dd"""bb!!cccmmmmccc]bb333ddd	chr3:52741600-52741866(+)$1	266	37	65	10.6475
[ccc####ddddmmmmdddd333ccc22	chr11:75277863-75278112(+)$1	249	184	212	15.9585
dddd"""eeeeellleeeee333dddde	chr17:42429686-42429977(+)$1	291	258	286	10.9603
ffffff!!eeeeellleeeee333ffff	chr1:226032098-226032337(+)$1	239	167	195	9.9128
ccc[ccceeeeemmmmeeeee]ccc]cc	chr12:9242466-9242673(-)$1	207	47	75	10.7699
eeee####ddddmmmmdddd4444eeee	chr2:219141987-219142203(-)$1	216	90	118	15.3756
bbffffffddddmmmmdddd4444ffff	chr9:116823603-116823809(-)$1	206	106	134	12.9033
[ccc####ddddmmmmdddd22ccc]cc	chr11:837359-837580(+)$1	221	94	122	14.8845
ccc!!bb[ddddmmmmdddd333bb444	chr16:88709752-88710018(-)$1	266	51	79	14.7811
cc!!ccc[ddddmmmmdddd]ccc22cc	chr10:7759648-7759851(+)$1	203	39	67	13.2769
[eeeee!!ddddmmmmdddd22eeeee]	chr14:70442331-70442604(+)$1	273	235	263	13.5241
gggg[cccddddmmmmdddd4444ccc]	chr8:11710018-11710269(-)$1	251	160	188	15.1584
fdddd"""ddddmmmmdddd]dddd]ff	chr12:58089702-58089921(+)$1	219	33	61	12.8465
ggg####eeeeemmmmeeeee333gggg	chr16:74565938-74566151(-)$1	213	34	62	13.0851
:ccc!!ddddoooooodddd22ccceee	chr19:47280421-47280642(-)$1	221	159	187	10.3021
##bbccc[ddddlllddddccc]bb333	chr17:79813273-79813543(-)$1	270	146	174	10.2100
eeee!!bb[cccmmmmccc]bb333eee	chr14:94849070-94849274(-)$1	204	105	133	10.4540
""dddda[ddddmmmmdddd]a333ddd	chr15:72637779-72637993(-)$1	214	17	45	14.3497
!!bb"""eeeeemmmmeeeee333bb]f	chr3:52834548-52834764(+)$1	216	27	55	12.3809
bbccc[bbddddmmmmdddd]bb]ccc]	chr12:8082327-8082568(-)$1	241	196	224	12.4491
fff!!cccddddnnnnndddd333ccc2	chr19:12986764-12987022(-)$1	258	51	79	11.6803
c[dddd!!ddddmmmmdddd333dddd]	chr19:4538006-4538286(-)$1	280	45	73	14.9869
ccc[ccc[ddddoooooodddd]ccc]c	chr7:72985422-72985667(-)$1	245	39	67	10.5505
cc[eeeeeddddmmmmdddd4444eeee	chr2:220088728-220088971(-)$1	243	106	134	13.9504
cccdddd[ddddmmmmdddd333dddd]	chr19:8368786-8369050(-)$1	264	228	256	14.6490
dccc[cccddddllldddd]ccc22ccc	chr8:17726036-17726281(-)$1	245	26	54	10.6145
hhddddddddcccmmmmccc333dddd]	chr13:46638682-46638929(-)$1	247	102	130	10.1311
========[cccmmmmccc4444=====	chr20:30802971-30803185(+)$1	214	140	168	12.0288
a[ccc####ddddmmmmdddd333ccc]	chr1:1153736-1153981(-)$1	245	215	243	13.1093
ffff"""ddddoooooodddd22fffff	chr11:121177954-121178187(+)$1	233	79	107	10.9819
$$$$$bb[ddddmmmmdddd]bb22bbe	chr12:58112046-58112298(+)$1	252	93	121	11.4759
fff[ddddddddmmmmdddd333dddd]	chr7:148702306-148702557(-)$1	251	125	153	14.0429
d[eeeee!!ddddllldddd333eeeee	chr8:98155147-98155367(+)$1	220	40	68	11.8865
gggg"""eeeeemmmmeeeeeggggggg	chr11:116661446-116661723(-)$1	277	209	237	11.1561
[ccc####ddddmmmmdddd]ccc]hhh	chr11:62655702-62655908(+)$1	206	47	75	14.0132
$$$dddd[ddddmmmmdddd333dddd5	chr1:20981832-20982044(-)$1	212	86	114	13.0533

#otherMatches

#Seq PSSM
GCUGGUGGACUGCGCCCAGGACUUCAAU	chr15:79223714-79223935(-)$1	221	98	126	10.6536
CUGGCCUCUGGAGGCGUCCUGGACGCUA	chr11:66114725-66114966(-)$1	241	148	176	10.1602
UCGGACCAACUGCUGGCAGAAUCUUCGU	chr19:18499155-18499390(+)$1	235	158	186	12.1555
AGAGCUACAUGGACCCCAUGAACGAGUA	chr1:1152953-1153165(-)$1	212	95	123	11.1289
UGUCUUGUGUCUAUAUGCAGAUGAGGCA	chr2:216229521-216229728(-)$1	207	0	28	9.0952
CGCUGGACUGGGGUCACCUGAUCGGGGC	chr19:17918928-17919243(+)$1	315	258	286	12.1165
UCCGUCUGCGCCCUCCGUGCUGUGGACC	chr12:9251102-9251304(-)$1	202	27	55	10.2704
CUGGAGAGACGAGCUGCGUCCUGGUUCC	chr12:3389453-3389744(+)$1	291	35	63	11.2845
ACUGGCAGCUCCUCCAGGACACCAGUUG	chr3:186338421-186338643(+)$1	222	93	121	9.8169
CGCGGCGUGAGGAGCCCUUCAACGAGCA	chr3:126260990-126261260(+)$1	270	114	142	10.8806
UUUGAAUGACGUAUGUGCGUUUAAUAAG	chr5:82849130-82849428(+)$1	298	3	31	12.8199
CAUGUCUAUGCCCAAAGGUAGAGUUCUG	chrX:132730524-132730727(-)$1	203	111	139	13.6460
GUGGCCAUGGGCAUUAGCCCGGCAGGCC	chr16:16173131-16173384(+)$1	253	8	36	11.3671
GGGCUAUGGCCUCUUUGGGCAUUGCAUU	chr6:43480397-43480655(-)$1	258	42	70	14.8283
CGCAACGGGGACCACUGUCCGCUCGGGC	chr19:18499315-18499521(+)$1	206	94	122	12.9810
AUCAACGAGCCUAACCGGCUAAGUGACA	chr4:39448231-39448517(+)$1	286	185	213	10.2299
UAUACGUAAUGAUUUUUUAAACUUUUAA	chr3:52741600-52741866(+)$1	266	37	65	10.6475
CCUCCUCCCAGGACCCCCUGCAAGAGUU	chr11:75277863-75278112(+)$1	249	184	212	15.9585
UGCCAACCCCCAUCCUGGGGCUGGGUAU	chr17:42429686-42429977(+)$1	291	258	286	10.9603
UCCCAGCGCUUCUACAAGGAGAACCUGG	chr1:226032098-226032337(+)$1	239	167	195	9.9128
UUUUCAGGAAAUGUGAAUUUCACUGUGA	chr12:9242466-9242673(-)$1	207	47	75	10.7699
CACCAUCUUCUGCUUUCAGACCAAGGUG	chr2:219141987-219142203(-)$1	216	90	118	15.3756
GUGAGUGCGGGUCCCCACCCCUGUGCGC	chr9:116823603-116823809(-)$1	206	106	134	12.9033
AUGCAGUUCCACUGCUGUGGCAGCAACA	chr11:837359-837580(+)$1	221	94	122	14.8845
GGCGAGCAGUGGACGCCCAUCGAGCCCA	chr16:88709752-88710018(-)$1	266	51	79	14.7811
GAAGCUGGGCUCCUAUGAGCACAGGAUC	chr10:7759648-7759851(+)$1	203	39	67	13.2769
UGGAGAGAGACCCGUUGGUUGGUCUCCU	chr14:70442331-70442604(+)$1	273	235	263	13.5241
UGCUCCUCUGCACCGCUGUAAUGUGAGU	chr8:11710018-11710269(-)$1	251	160	188	15.1584
CCCUUGCAGAUUCAGAGAUCAAAGGUGA	chr12:58089702-58089921(+)$1	219	33	61	12.8465
GGUUCUCuauauauauauauauauauuu	chr16:74565938-74566151(-)$1	213	34	62	13.0851
AGAUCAUCACCAUCCUGUGAGUGUCAGG	chr19:47280421-47280642(-)$1	221	159	187	10.3021
CUGCCUGACGGCGCAGCUGCAGAGUCCU	chr17:79813273-79813543(-)$1	270	146	174	10.2100
CUGACCACCGGCAAUGGCCUGUUCCUCA	chr14:94849070-94849274(-)$1	204	105	133	10.4540
UAGACAAGAGGUAGCAGCCUGUGGAUGU	chr15:72637779-72637993(-)$1	214	17	45	14.3497
GCUGAGGGGCAUCAGUAUGCUGAACAAG	chr3:52834548-52834764(+)$1	216	27	55	12.3809
GUGCUAGAGCUCUUUAGAGUGUCCAGCU	chr12:8082327-8082568(-)$1	241	196	224	12.4491
UGGACCUGCGUGGGUGACAUGAAUCGGA	chr19:12986764-12987022(-)$1	258	51	79	11.6803
CAGCCGGUGCCUUCCAGGGCCUGCGGCA	chr19:4538006-4538286(-)$1	280	45	73	14.9869
GAAGUCUGCUUUGGAAAGAAGGGGGAGU	chr7:72985422-72985667(-)$1	245	39	67	10.5505
ACCGUCACACUCCUGGGGGUCACCGUGA	chr2:220088728-220088971(-)$1	243	106	134	13.9504
CGCUGAGCGAUGACUGCAUUCCACUCAC	chr19:8368786-8369050(-)$1	264	228	256	14.6490
UUUUUCUUUAGAAUUUCUACGAGUUGAA	chr8:17726036-17726281(-)$1	245	26	54	10.6145
UCGGAACAGACCUGAAUAGGAACUUUGC	chr13:46638682-46638929(-)$1	247	102	130	10.1311
UCCAGGCUUACCAUCGGGUCAUCAGCUU	chr20:30802971-30803185(+)$1	214	140	168	12.0288
GGGCCUGAGGCAGGAAGCUGUGCUGGUG	chr1:1153736-1153981(-)$1	245	215	243	13.1093
AUAAUUAUGGACAAUAUUUCACUUUGUG	chr11:121177954-121178187(+)$1	233	79	107	10.9819
GAGACCGGCUCCGUUCGGAGGUGAAGGC	chr12:58112046-58112298(+)$1	252	93	121	11.4759
GGCCAAGGACUUCCCUGAGUACACCUUU	chr7:148702306-148702557(-)$1	251	125	153	14.0429
GUGUAUUCAGCAGUGUCUGUCAAAAUAC	chr8:98155147-98155367(+)$1	220	40	68	11.8865
UGCAGGAGCUGCAGGAGCAGUUGCGCGU	chr11:116661446-116661723(-)$1	277	209	237	11.1561
CUGUACCCAGGGGAGCCCCUCACACGCU	chr11:62655702-62655908(+)$1	206	47	75	14.0132
AAUCCCAUCCUCUUUCGAGGUGUUGGGU	chr1:20981832-20982044(-)$1	212	86	114	13.0533

#DB
((((..(..(((....)))..)......	chr15:79223714-79223935(-)$1	1	98	126	10.6536
(((((.((((((....))).))).))))	chr11:66114725-66114966(-)$1	1	148	176	10.1602
.((((....(((....)))....)))).	chr19:18499155-18499390(+)$1	1	158	186	12.1555
.(.(((.(((((...)))))....))).	chr1:1152953-1153165(-)$1	1	95	123	11.1289
((((((..((((......))))))))))	chr2:216229521-216229728(-)$1	1	0	28	9.0952
..((.((.((((....)))).)).))..	chr19:17918928-17919243(+)$1	1	258	286	12.1165
((((.(.((((.....)))).)))))).	chr12:9251102-9251304(-)$1	1	27	55	10.2704
.(((((.((((.....))))....))))	chr12:3389453-3389744(+)$1	1	35	63	11.2845
(((((..(.(((....)))).))))).)	chr3:186338421-186338643(+)$1	1	93	121	9.8169
.((..(((((((....)))).))).)).	chr3:126260990-126261260(+)$1	1	114	142	10.8806
((((...(((((....)))))...))))	chr5:82849130-82849428(+)$1	1	3	31	12.8199
((...((.((((....)))).))...))	chrX:132730524-132730727(-)$1	1	111	139	13.6460
((((((.(((((....)))))...))))	chr16:16173131-16173384(+)$1	1	8	36	11.3671
((((.(((((((....))))....))).	chr6:43480397-43480655(-)$1	1	42	70	14.8283
((....(.((((....)))).).)).))	chr19:18499315-18499521(+)$1	1	94	122	12.9810
.(((...((((.....))))...)))..	chr4:39448231-39448517(+)$1	1	185	213	10.2299
((...((..(((....))).))...)))	chr3:52741600-52741866(+)$1	1	37	65	10.6475
.(((....((((....))))...)))..	chr11:75277863-75278112(+)$1	1	184	212	15.9585
((((...(((((...)))))...)))))	chr17:42429686-42429977(+)$1	1	258	286	10.9603
((((((..(((((...)))))...))))	chr1:226032098-226032337(+)$1	1	167	195	9.9128
(((.((((((((....))))).))).))	chr12:9242466-9242673(-)$1	1	47	75	10.7699
((((....((((....))))....))))	chr2:219141987-219142203(-)$1	1	90	118	15.3756
((((((((((((....))))....))))	chr9:116823603-116823809(-)$1	1	106	134	12.9033
.(((....((((....))))..))).))	chr11:837359-837580(+)$1	1	94	122	14.8845
(((..((.((((....))))...))...	chr16:88709752-88710018(-)$1	1	51	79	14.7811
((..(((.((((....)))).)))..))	chr10:7759648-7759851(+)$1	1	39	67	13.2769
.(((((..((((....))))..))))).	chr14:70442331-70442604(+)$1	1	235	263	13.5241
((((.(((((((....))))....))).	chr8:11710018-11710269(-)$1	1	160	188	15.1584
(((((...((((....)))).)))).))	chr12:58089702-58089921(+)$1	1	33	61	12.8465
(((....(((((....)))))...))))	chr16:74565938-74566151(-)$1	1	34	62	13.0851
.(((..((((......))))..)))(((	chr19:47280421-47280642(-)$1	1	159	187	10.3021
..(((((.((((...))))))).))...	chr17:79813273-79813543(-)$1	1	146	174	10.2100
((((..((.(((....))).))...)))	chr14:94849070-94849274(-)$1	1	105	133	10.4540
..(((((.((((....)))).)...)))	chr15:72637779-72637993(-)$1	1	17	45	14.3497
..((...(((((....)))))...)).)	chr3:52834548-52834764(+)$1	1	27	55	12.3809
(((((.((((((....)))).)).))).	chr12:8082327-8082568(-)$1	1	196	224	12.4491
(((..(((((((.....))))...))).	chr19:12986764-12987022(-)$1	1	51	79	11.6803
(.((((..((((....))))...)))).	chr19:4538006-4538286(-)$1	1	45	73	14.9869
(((.(((.((((......)))).))).)	chr7:72985422-72985667(-)$1	1	39	67	10.5505
((.(((((((((....))))....))))	chr2:220088728-220088971(-)$1	1	106	134	13.9504
(((((((.((((....))))...)))).	chr19:8368786-8369050(-)$1	1	228	256	14.6490
((((.(((((((...)))).)))..)))	chr8:17726036-17726281(-)$1	1	26	54	10.6145
(((((((((((((....)))...)))).	chr13:46638682-46638929(-)$1	1	102	130	10.1311
((((((((.(((....)))....)))))	chr20:30802971-30803185(+)$1	1	140	168	12.0288
(.(((....((((....))))...))).	chr1:1153736-1153981(-)$1	1	215	243	13.1093
((((...((((......))))..)))))	chr11:121177954-121178187(+)$1	1	79	107	10.9819
.....((.((((....)))).))..)))	chr12:58112046-58112298(+)$1	1	93	121	11.4759
(((.((((((((....))))...)))).	chr7:148702306-148702557(-)$1	1	125	153	14.0429
(.(((((..((((...))))...)))))	chr8:98155147-98155367(+)$1	1	40	68	11.8865
((((...(((((....))))))))))))	chr11:116661446-116661723(-)$1	1	209	237	11.1561
.(((....((((....)))).))).)))	chr11:62655702-62655908(+)$1	1	47	75	14.0132
...((((.((((....))))...)))).	chr1:20981832-20982044(-)$1	1	86	114	13.0533

#PSSM
c : 0.15	f : 0.13	g : 0.09	[ : 0.09	e : 0.09	! : 0.07	d : 0.07	: : 0.05	b : 0.05	h : 0.03	$ : 0.03	# : 0.01	" : 0.01	= : 0.01	a : 0.01	
c : 0.24	e : 0.13	f : 0.11	g : 0.09	d : 0.07	b : 0.07	[ : 0.05	! : 0.03	h : 0.03	$ : 0.03	a : 0.01	# : 0.01	" : 0.01	= : 0.01	
c : 0.23	e : 0.15	d : 0.13	f : 0.13	g : 0.09	b : 0.07	[ : 0.03	" : 0.03	$ : 0.03	# : 0.01	! : 0.01	= : 0.01	
d : 0.17	c : 0.17	e : 0.17	f : 0.09	g : 0.07	! : 0.07	b : 0.05	[ : 0.05	" : 0.03	# : 0.03	= : 0.01	$ : 0.01	
d : 0.17	" : 0.15	c : 0.13	! : 0.11	# : 0.11	[ : 0.09	e : 0.09	f : 0.05	g : 0.01	= : 0.01	$ : 0.01	
c : 0.19	# : 0.15	" : 0.13	d : 0.13	b : 0.09	! : 0.07	e : 0.07	f : 0.05	[ : 0.03	a : 0.01	= : 0.01	
c : 0.19	# : 0.13	b : 0.13	" : 0.13	! : 0.09	d : 0.09	[ : 0.07	a : 0.05	e : 0.03	f : 0.01	= : 0.01	
[ : 0.21	e : 0.17	! : 0.13	d : 0.13	c : 0.11	# : 0.11	b : 0.03	a : 0.01	f : 0.01	" : 0.01	= : 0.01	
d : 0.65	e : 0.17	! : 0.05	[ : 0.05	# : 0.03	c : 0.01	
d : 0.69	e : 0.17	c : 0.13	
d : 0.65	e : 0.17	c : 0.15	o : 0.01	
d : 0.57	e : 0.17	c : 0.15	n : 0.05	o : 0.03	
m : 0.69	l : 0.07	o : 0.07	n : 0.07	d : 0.03	e : 0.01	c : 0.01	
m : 0.73	l : 0.11	o : 0.07	n : 0.07	
m : 0.73	l : 0.11	o : 0.07	n : 0.07	
m : 0.73	o : 0.07	n : 0.07	e : 0.03	l : 0.03	d : 0.03	
d : 0.57	e : 0.17	c : 0.13	o : 0.05	m : 0.03	n : 0.01	
d : 0.63	e : 0.17	c : 0.15	o : 0.03	
d : 0.67	e : 0.17	c : 0.15	
d : 0.63	e : 0.17	] : 0.07	4 : 0.03	c : 0.03	2 : 0.01	a : 0.01	
] : 0.23	3 : 0.19	4 : 0.17	e : 0.13	d : 0.09	2 : 0.07	c : 0.05	b : 0.03	
3 : 0.32	4 : 0.17	c : 0.11	b : 0.11	a : 0.07	2 : 0.07	d : 0.05	e : 0.01	] : 0.01	g : 0.01	
3 : 0.38	4 : 0.17	c : 0.15	b : 0.07	e : 0.05	] : 0.05	> : 0.01	f : 0.01	d : 0.01	2 : 0.01	g : 0.01	
3 : 0.21	c : 0.17	d : 0.15	4 : 0.13	e : 0.07	] : 0.05	b : 0.05	f : 0.03	2 : 0.03	> : 0.01	= : 0.01	g : 0.01	
c : 0.23	d : 0.17	e : 0.15	b : 0.09	f : 0.07	3 : 0.07	g : 0.05	2 : 0.05	] : 0.03	> : 0.01	= : 0.01	
d : 0.19	c : 0.19	e : 0.19	f : 0.07	b : 0.07	] : 0.07	g : 0.05	3 : 0.03	> : 0.01	4 : 0.01	2 : 0.01	= : 0.01	h : 0.01	
c : 0.21	d : 0.19	e : 0.17	f : 0.09	g : 0.05	] : 0.05	b : 0.05	2 : 0.03	> : 0.01	: : 0.01	4 : 0.01	3 : 0.01	= : 0.01	h : 0.01	
] : 0.21	e : 0.17	f : 0.11	c : 0.11	d : 0.07	g : 0.05	2 : 0.05	3 : 0.03	: : 0.03	> : 0.01	b : 0.01	4 : 0.01	= : 0.01	h : 0.01	5 : 0.01	

#score	635.9779394511291
#seq	52
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF304YLR_TBRG4_transcript_m1_run2.txt

#BEAR
ddd^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chrM:7789-7993(+)$1	204	144	176	40.9005
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:13398-13610(+)$1	212	23	55	44.9742
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:9757-9977(+)$1	220	84	116	44.9742
[ccc^^^^^^^^^^^^^^^^^^^^^^^ccc]b	chrM:7844-8049(+)$1	205	83	115	39.6136
^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]dd	chrM:7783-7989(+)$1	206	37	69	44.3008
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:9033-9282(+)$1	249	60	92	44.5132
^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]dd	chrM:4778-5019(+)$1	241	153	185	44.3008
^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]dd	chrM:4846-5085(+)$1	239	85	117	44.3008
ee^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:13804-14076(+)$1	272	123	155	42.7419
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:13305-13575(+)$1	270	116	148	44.9742
^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc44	chrM:10146-10373(+)$1	227	120	152	44.2522
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:9654-9874(+)$1	220	187	219	44.9742
ffffff^^^^^^^^^^^^^^^^^^^^^fffff	chrM:13437-13679(+)$1	242	61	93	35.4428
^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]dd	chrM:4819-5046(+)$1	227	112	144	44.3008
[ccc^^^^^^^^^^^^^^^^^^^^^^^ccc]b	chrM:7910-8119(+)$1	209	17	49	39.6136
dd^^^^^^^^^^^^^^^^^^^^^^^^^dddd:	chrM:15458-15708(+)$1	250	165	197	41.3595
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:13608-13840(+)$1	232	68	100	44.9742
ddd^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chrM:7793-8044(+)$1	251	140	172	40.9005
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:4623-4856(+)$1	233	102	134	44.9742
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10710-10950(+)$1	240	167	199	44.5132
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddde	chr1:567806-568096(+)$1	290	38	70	44.6358
dd^^^^^^^^^^^^^^^^^^^^^^^^^dddd:	chrM:15425-15658(+)$1	233	198	230	41.3595
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10795-11002(+)$1	207	82	114	44.5132
ddd^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chrM:7869-8109(+)$1	240	64	96	40.9005
^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]dd	chrM:7744-7957(+)$1	213	76	108	44.3008
^^^^^^^^^^^^^^^^^^^^^^^^^^^bbeee	chrM:11032-11262(+)$1	230	87	119	44.6203
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:9744-9957(+)$1	213	97	129	44.9742
ffffff^^^^^^^^^^^^^^^^^^^^^fffff	chrM:13375-13593(+)$1	218	123	155	35.4428
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10827-11055(+)$1	228	50	82	44.5132
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10791-10995(+)$1	204	86	118	44.5132
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:13393-13598(+)$1	205	28	60	44.9742
ccc^^^^^^^^^^^^^^^^^^^^^^^^ccc]b	chr3:25508894-25509134(+)$1	240	138	170	40.8954
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:13589-13808(+)$1	219	87	119	44.9742
d[bb^^^^^^^^^^^^^^^^^^^^^bbdddd2	chr5:134262633-134262925(-)$1	292	238	270	36.2499
eeee^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:12187-12420(+)$1	233	130	162	40.0249
^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrM:9835-10043(+)$1	208	5	37	44.6193
^^^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chrM:11267-11493(+)$1	226	33	65	43.9150
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10782-10990(+)$1	208	95	127	44.5132
^^^^^^^^^^^^^^^^^^^^^^^ccc:bb[dd	chrM:10756-10982(+)$1	226	22	54	38.0284
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:9779-9983(+)$1	204	62	94	44.9742
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:13259-13474(+)$1	215	162	194	44.9742
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:9783-10002(+)$1	219	58	90	44.9742
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10803-11027(+)$1	224	74	106	44.5132
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:9726-9943(+)$1	217	115	147	44.9742
^^^^^^^^^^^^^^^^^^^^^^^ccc:bb[dd	chrM:10750-10956(+)$1	206	28	60	38.0284

#otherMatches

#Seq PSSM
AAUCUUCAACUCCUACAUACUUCCCCCAUUAU	chrM:7789-7993(+)$1	204	144	176	40.9005
UACUCAAAACCAUACCUCUCACUUCAACCUCC	chrM:13398-13610(+)$1	212	23	55	44.9742
CAACUUUCCUCACUAUCUGCUUCAUCCGCCAA	chrM:9757-9977(+)$1	220	84	116	44.9742
CGGACUAAUCUUCAACUCCUACAUACUUCCCC	chrM:7844-8049(+)$1	205	83	115	39.6136
CCAUCCCUACGCAUCCUUUACAUAACAGACGA	chrM:7783-7989(+)$1	206	37	69	44.3008
ACUUAUCAUCUUCACAAUUCUAAUUCUACUGA	chrM:9033-9282(+)$1	249	60	92	44.5132
CCUCACUCUCUCAAUCUUAUCCAUCAUAGCAG	chrM:4778-5019(+)$1	241	153	185	44.3008
CCUCACUCUCUCAAUCUUAUCCAUCAUAGCAG	chrM:4846-5085(+)$1	239	85	117	44.3008
AGCAUCACACACCGCACAAUCCCCUAUCUAGG	chrM:13804-14076(+)$1	272	123	155	42.7419
UACUCAAAACCAUACCUCUCACUUCAACCUCC	chrM:13305-13575(+)$1	270	116	148	44.9742
GCCCUCCUUUUACCCCUACCAUGAGCCCUACA	chrM:10146-10373(+)$1	227	120	152	44.2522
CAACUUUCCUCACUAUCUGCUUCAUCCGCCAA	chrM:9654-9874(+)$1	220	187	219	44.9742
GGUUUCUACUCCAAAGACCACAUCAUCGAAAC	chrM:13437-13679(+)$1	242	61	93	35.4428
CCUCACUCUCUCAAUCUUAUCCAUCAUAGCAG	chrM:4819-5046(+)$1	227	112	144	44.3008
CGGACUAAUCUUCAACUCCUACAUACUUCCCC	chrM:7910-8119(+)$1	209	17	49	39.6136
GCCCUAUUACUAUCCAUCCUCAUCCUAGCAAU	chrM:15458-15708(+)$1	250	165	197	41.3595
ACCCCACCCUACUAAACCCCAUUAAACGCCUG	chrM:13608-13840(+)$1	232	68	100	44.9742
AAUCUUCAACUCCUACAUACUUCCCCCAUUAU	chrM:7793-8044(+)$1	251	140	172	40.9005
AUAACCAAUACUACCAAUCAAUACUCAUCAUU	chrM:4623-4856(+)$1	233	102	134	44.9742
CUAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10710-10950(+)$1	240	167	199	44.5132
CAGUAAUAUUAAUAAUUUUCAUAAUUUGAGAA	chr1:567806-568096(+)$1	290	38	70	44.6358
GCCCUAUUACUAUCCAUCCUCAUCCUAGCAAU	chrM:15425-15658(+)$1	233	198	230	41.3595
CUAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10795-11002(+)$1	207	82	114	44.5132
AAUCUUCAACUCCUACAUACUUCCCCCAUUAU	chrM:7869-8109(+)$1	240	64	96	40.9005
CCAUCCCUACGCAUCCUUUACAUAACAGACGA	chrM:7744-7957(+)$1	213	76	108	44.3008
CUUCUUCGAAACCACACUUAUCCCCACCUUGG	chrM:11032-11262(+)$1	230	87	119	44.6203
CAACUUUCCUCACUAUCUGCUUCAUCCGCCAA	chrM:9744-9957(+)$1	213	97	129	44.9742
GGUUUCUACUCCAAAGACCACAUCAUCGAAAC	chrM:13375-13593(+)$1	218	123	155	35.4428
CUAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10827-11055(+)$1	228	50	82	44.5132
CUAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10791-10995(+)$1	204	86	118	44.5132
UACUCAAAACCAUACCUCUCACUUCAACCUCC	chrM:13393-13598(+)$1	205	28	60	44.9742
agcucaaacaaacacuucucacccucugcuug	chr3:25508894-25509134(+)$1	240	138	170	40.8954
ACCCCACCCUACUAAACCCCAUUAAACGCCUG	chrM:13589-13808(+)$1	219	87	119	44.9742
GACUUCAAACCCUACUCCCACUAAUAGCCUUU	chr5:134262633-134262925(-)$1	292	238	270	36.2499
UGCAACUCCAAAUAAAAGUAAUAACCAUGCAC	chrM:12187-12420(+)$1	233	130	162	40.0249
UCAACUUUCCUCACUAUCUGCUUCAUCCGCCA	chrM:9835-10043(+)$1	208	5	37	44.6193
CUCACUGCCCAAGAACUAUCAAACUCCUGAGC	chrM:11267-11493(+)$1	226	33	65	43.9150
CUAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10782-10990(+)$1	208	95	127	44.5132
CCAACAAUUAUAUUACUACCACUGACAUGACU	chrM:10756-10982(+)$1	226	22	54	38.0284
CAACUUUCCUCACUAUCUGCUUCAUCCGCCAA	chrM:9779-9983(+)$1	204	62	94	44.9742
UACUCAAAACCAUACCUCUCACUUCAACCUCC	chrM:13259-13474(+)$1	215	162	194	44.9742
CAACUUUCCUCACUAUCUGCUUCAUCCGCCAA	chrM:9783-10002(+)$1	219	58	90	44.9742
CUAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10803-11027(+)$1	224	74	106	44.5132
CAACUUUCCUCACUAUCUGCUUCAUCCGCCAA	chrM:9726-9943(+)$1	217	115	147	44.9742
CCAACAAUUAUAUUACUACCACUGACAUGACU	chrM:10750-10956(+)$1	206	28	60	38.0284

#DB
(((........................)))).	chrM:7789-7993(+)$1	1	144	176	40.9005
...........................)))))	chrM:13398-13610(+)$1	1	23	55	44.9742
...........................)))))	chrM:9757-9977(+)$1	1	84	116	44.9742
.(((.......................))).)	chrM:7844-8049(+)$1	1	83	115	39.6136
...........................)).))	chrM:7783-7989(+)$1	1	37	69	44.3008
.............................)))	chrM:9033-9282(+)$1	1	60	92	44.5132
...........................)).))	chrM:4778-5019(+)$1	1	153	185	44.3008
...........................)).))	chrM:4846-5085(+)$1	1	85	117	44.3008
((.........................)))))	chrM:13804-14076(+)$1	1	123	155	42.7419
...........................)))))	chrM:13305-13575(+)$1	1	116	148	44.9742
...........................)))..	chrM:10146-10373(+)$1	1	120	152	44.2522
...........................)))))	chrM:9654-9874(+)$1	1	187	219	44.9742
((((((.....................)))))	chrM:13437-13679(+)$1	1	61	93	35.4428
...........................)).))	chrM:4819-5046(+)$1	1	112	144	44.3008
.(((.......................))).)	chrM:7910-8119(+)$1	1	17	49	39.6136
((.........................)))).	chrM:15458-15708(+)$1	1	165	197	41.3595
...........................)))))	chrM:13608-13840(+)$1	1	68	100	44.9742
(((........................)))).	chrM:7793-8044(+)$1	1	140	172	40.9005
...........................)))))	chrM:4623-4856(+)$1	1	102	134	44.9742
.............................)))	chrM:10710-10950(+)$1	1	167	199	44.5132
...........................)))))	chr1:567806-568096(+)$1	1	38	70	44.6358
((.........................)))).	chrM:15425-15658(+)$1	1	198	230	41.3595
.............................)))	chrM:10795-11002(+)$1	1	82	114	44.5132
(((........................)))).	chrM:7869-8109(+)$1	1	64	96	40.9005
...........................)).))	chrM:7744-7957(+)$1	1	76	108	44.3008
...........................)))))	chrM:11032-11262(+)$1	1	87	119	44.6203
...........................)))))	chrM:9744-9957(+)$1	1	97	129	44.9742
((((((.....................)))))	chrM:13375-13593(+)$1	1	123	155	35.4428
.............................)))	chrM:10827-11055(+)$1	1	50	82	44.5132
.............................)))	chrM:10791-10995(+)$1	1	86	118	44.5132
...........................)))))	chrM:13393-13598(+)$1	1	28	60	44.9742
(((........................))).)	chr3:25508894-25509134(+)$1	1	138	170	40.8954
...........................)))))	chrM:13589-13808(+)$1	1	87	119	44.9742
(.((.....................)))))).	chr5:134262633-134262925(-)$1	1	238	270	36.2499
((((.......................)))))	chrM:12187-12420(+)$1	1	130	162	40.0249
............................))))	chrM:9835-10043(+)$1	1	5	37	44.6193
...........................)))))	chrM:11267-11493(+)$1	1	33	65	43.9150
.............................)))	chrM:10782-10990(+)$1	1	95	127	44.5132
.......................))).((.((	chrM:10756-10982(+)$1	1	22	54	38.0284
...........................)))))	chrM:9779-9983(+)$1	1	62	94	44.9742
...........................)))))	chrM:13259-13474(+)$1	1	162	194	44.9742
...........................)))))	chrM:9783-10002(+)$1	1	58	90	44.9742
.............................)))	chrM:10803-11027(+)$1	1	74	106	44.5132
...........................)))))	chrM:9726-9943(+)$1	1	115	147	44.9742
.......................))).((.((	chrM:10750-10956(+)$1	1	28	60	38.0284

#PSSM
^ : 0.71	d : 0.13	[ : 0.04	e : 0.04	f : 0.04	c : 0.02	
^ : 0.71	d : 0.11	c : 0.06	e : 0.04	f : 0.04	[ : 0.02	
^ : 0.77	d : 0.06	c : 0.06	f : 0.04	b : 0.02	e : 0.02	
^ : 0.86	c : 0.04	f : 0.04	b : 0.02	e : 0.02	
^ : 0.95	f : 0.04	
^ : 0.95	f : 0.04	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.95	c : 0.04	
^ : 0.95	c : 0.04	
^ : 0.93	c : 0.04	b : 0.02	
^ : 0.93	: : 0.04	b : 0.02	
e : 0.33	b : 0.17	^ : 0.17	d : 0.15	c : 0.08	f : 0.06	
e : 0.33	d : 0.17	b : 0.17	^ : 0.15	c : 0.08	f : 0.06	
e : 0.35	c : 0.24	d : 0.17	] : 0.11	f : 0.06	[ : 0.04	
e : 0.35	d : 0.33	c : 0.15	] : 0.06	f : 0.06	4 : 0.02	
e : 0.37	d : 0.17	c : 0.15	] : 0.06	b : 0.06	f : 0.06	: : 0.04	4 : 0.02	2 : 0.02	

#score	1931.3075776495218
#seq	45
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_UTR_m2_run2.txt

#BEAR
d"""ffffffwwwwwwwwwwwwwwfffff	chr11:77327160-77327404(-)$1	244	60	89	21.8663
hhhhhh[bbvvvvvvvvvvvvvbb]hhhh	chr6:170886174-170886446(-)$1	272	27	56	22.8997
gggggg[awwwwwwwwwwwwwwa]ggggg	chr12:42835561-42835825(+)$1	264	157	186	24.2152
#eeeeeyyyyyyyyyyyyyyyyeeeeeee	chr1:245017390-245017614(-)$1	224	129	158	21.7816
==========uuuuuuuuuuuu=======	chr7:158523674-158523956(-)$1	282	144	173	25.6924
==========ttttttttttt========	chr2:10269529-10269834(+)$1	305	13	42	24.4207
c!!cccyyyyyyyyyyyyyyyycccccc:	chr3:112719822-112720124(+)$1	302	63	92	21.4700
$$$$a!!bbvvvvvvvvvvvvvbb22a33	chr22:29696189-29696443(+)$1	254	152	181	22.9013
ddeeeeeyyyyyyyyyyyyyyyyeeeee3	chr5:138665547-138665820(+)$1	273	218	247	22.1849
dd[eeeeewwwwwwwwwwwwwweeeee]d	chr4:39455732-39455939(-)$1	207	95	124	22.8610
bbccc!!ddddtttttttttttdddd]cc	chr11:18548291-18548566(-)$1	275	212	241	22.2451
fffff!!cccwwwwwwwwwwwwwwccc]f	chr2:128238379-128238635(-)$1	256	186	215	22.9788
bb!!eeeeevvvvvvvvvvvvveeeee22	chr16:56395863-56396127(-)$1	264	142	171	23.6780
[gggggggwwwwwwwwwwwwwwggggggg	chr16:85840243-85840470(+)$1	227	62	91	24.1438
ccc!!cccxxxxxxxxxxxxxxxcccccc	chr1:165631938-165632232(-)$1	294	221	250	19.3520
[gggggggwwwwwwwwwwwwwwggggggg	chr6:3153879-3154167(-)$1	288	236	265	24.1438
ffff[eeeeettttttttttteeeee22f	chr17:40353378-40353661(-)$1	283	248	277	22.4444
iii:ffffffyyyyyyyyyyyyyyyyfff	chr15:89860186-89860437(+)$1	251	202	231	20.0801
eeeeeee[bbtttttttttttbbeeeee]	chr6:41757407-41757703(+)$1	296	112	141	22.8414
fffff[eeeeettttttttttteeeee33	chrX:122734853-122735119(-)$1	266	1	30	22.3914
iiiggggggguuuuuuuuuuuuggggggg	chr15:45010110-45010349(+)$1	239	126	155	25.2780
hhhhhhhhbbuuuuuuuuuuuubb]hhhh	chr1:66098878-66099164(+)$1	286	219	248	22.9323
:ggggggg[attttttttttta]gggggg	chr6:34845876-34846128(-)$1	252	8	37	23.7767
iiiiiiiiivvvvvvvvvvvvviiiiiii	chr2:15771022-15771274(+)$1	252	179	208	25.0615
hhhhhh[cccuuuuuuuuuuuuccchhhh	chr12:118582579-118582851(+)$1	272	38	67	24.2277
ccc[eeeeeyyyyyyyyyyyyyyyyeeee	chr12:7079637-7079891(-)$1	254	136	165	22.2876
bbdddd!!bbtttttttttttbb22dddd	chr11:77327246-77327560(-)$1	314	95	124	21.5060
======!!ccctttttttttttccc22==	chr2:62095641-62095897(-)$1	256	154	183	24.0263
&bb[ddddwwwwwwwwwwwwwwdddd]bb	chr11:61556513-61556764(-)$1	251	34	63	21.2619
ffffff[ccctttttttttttccc]ffff	chr12:51453982-51454238(+)$1	256	129	158	23.3984
ccc[ffffffuuuuuuuuuuuuffffff2	chr6:7882582-7882801(-)$1	219	137	166	23.7349
:eeeee[cccuuuuuuuuuuuuccc22ee	chr11:18428880-18429096(+)$1	216	168	197	23.9353
ggggggddddtttttttttttdddd]ggg	chr18:34376401-34376706(-)$1	305	111	140	23.4126
ciiiiiiiiitttttttttttiiiiiiii	chrX:48435999-48436255(+)$1	256	17	46	23.9301
eeeebb!!bbvvvvvvvvvvvvvbb22bb	chr3:40499343-40499582(+)$1	239	144	173	21.8511
ccc[ddddwwwwwwwwwwwwwwddddccc	chr3:179342068-179342301(+)$1	233	49	78	22.8863
gggggggcccuuuuuuuuuuuuccc]ggg	chr11:34492910-34493140(+)$1	230	106	135	25.7505
cdddd[acccwwwwwwwwwwwwwwccc]a	chr7:30673449-30673689(+)$1	240	125	154	22.7098
::gggggggvvvvvvvvvvvvvggggggg	chr6:27101140-27101413(+)$1	273	201	230	22.9916
Heeeee[ccctttttttttttccceeeee	chr14:76117332-76117655(-)$1	323	203	232	23.2920
e!!a[ddddvvvvvvvvvvvvvdddd]a5	chr15:72491435-72491659(-)$1	224	69	98	23.0897
!!gggggggvvvvvvvvvvvvvggggggg	chr1:182352354-182352618(-)$1	264	104	133	25.1195
eeee[ccc[bbtttttttttttbb]ccce	chr2:26413885-26414140(-)$1	255	162	191	22.3037
!!dddddddduuuuuuuuuuuudddd]dd	chr17:41167143-41167389(-)$1	246	143	172	23.6225
fffff[ddddvvvvvvvvvvvvvdddd]f	chr20:43536931-43537194(+)$1	263	128	157	23.0376
fff####cccwwwwwwwwwwwwwwccc44	chr7:42956978-42957209(-)$1	231	180	209	22.5502
ccdddd[ccctttttttttttcccdddd2	chr17:40948780-40949053(+)$1	273	187	216	23.2864
ddd!!cccwwwwwwwwwwwwwwccc22dd	chr1:151234534-151234809(+)$1	275	124	153	22.8100
cc!!ffffffyyyyyyyyyyyyyyyyfff	chr16:31202791-31203007(+)$1	216	140	169	21.2561
!ccc[eeeeettttttttttteeeee]cc	chr1:100757154-100757402(+)$1	248	174	203	23.3120
gg[a[eeeeevvvvvvvvvvvvveeeee]	chr12:111180489-111180785(-)$1	296	194	223	24.0377
gggggggxxxxxxxxxxxxxxxggggggg	chr10:27400461-27400703(-)$1	242	5	34	19.4763
!!eeeee[bbuuuuuuuuuuuubb22eee	chr2:176042900-176043158(-)$1	258	108	137	24.0383
[dddd[ddddvvvvvvvvvvvvvdddddd	chrX:22012649-22012870(+)$1	221	75	104	22.7599
iiiiiiiiivvvvvvvvvvvvviiiiiii	chr10:85912102-85912325(+)$1	223	118	147	25.0615
$$$$fffffftttttttttttffffffee	chr11:111965777-111966037(+)$1	260	44	73	21.5103
c!!ccc[ccctttttttttttcccccc22	chr7:127732431-127732708(+)$1	277	93	122	24.1301

#otherMatches

#Seq PSSM
UCUUAGGUUGUAUCCUUUAAUUUCCAGCC	chr11:77327160-77327404(-)$1	244	60	89	21.8663
CCUAUAUUGACAACAGACAUACCAUUAUA	chr6:170886174-170886446(-)$1	272	27	56	22.8997
AAGUGUACUAUCCUAAUAAACUGAAUACU	chr12:42835561-42835825(+)$1	264	157	186	24.2152
AUGUGACUUUUUUUUUUUUUUAUCACAAC	chr1:245017390-245017614(-)$1	224	129	158	21.7816
CCCCCACUGCAAAUAGAGAACAGCGGUGG	chr7:158523674-158523956(-)$1	282	144	173	25.6924
GAUUUUUUUUUUCCAUCUCAUAAGAAAAA	chr2:10269529-10269834(+)$1	305	13	42	24.4207
GAUCACUUGAGCUUUAAAACCUGUGCCUU	chr3:112719822-112720124(+)$1	302	63	92	21.4700
UUUUCUUCCUUCUUUUAAAAAUGGUUGUU	chr22:29696189-29696443(+)$1	254	152	181	22.9013
ACCAGUAUUAAUUUUUGAGAUCUUACUGC	chr5:138665547-138665820(+)$1	273	218	247	22.1849
UACCUGGCUACAGAAAGAAGAUGCCAGAU	chr4:39455732-39455939(-)$1	207	95	124	22.8610
UCGGAGAGCCAGCUCAAGAAAAUGGUGUC	chr11:18548291-18548566(-)$1	275	212	241	22.2451
UUGUACAAAGGAAUACUAGUCAUACUUCU	chr2:128238379-128238635(-)$1	256	186	215	22.9788
GUUUGGUCCUUGAACAAGAUGUGGGCCUU	chr16:56395863-56396127(-)$1	264	142	171	23.6780
UGAGAUAGUCUUGCCCCAUAACCUGUCUC	chr16:85840243-85840470(+)$1	227	62	91	24.1438
GGAAAAGAGACUAGGAUAAUACAUCUUCC	chr1:165631938-165632232(-)$1	294	221	250	19.3520
AUCUAUACUAAUAAAAAAGCAUGUGUAGA	chr6:3153879-3154167(-)$1	288	236	265	24.1438
AGUUGGCCAUGUGUCUUAAGAGUGGCUGG	chr17:40353378-40353661(-)$1	283	248	277	22.4444
GUACAGGUAGAAUAUUUGAAGCUCUGCUG	chr15:89860186-89860437(+)$1	251	202	231	20.0801
UAAAGUUCUGUACAUAGUUCCCAAGCUUC	chr6:41757407-41757703(+)$1	296	112	141	22.8414
AAUGAAGAGGGCCAUUUGCAUCUCCUUAA	chrX:122734853-122735119(-)$1	266	1	30	22.3914
UCAUAUAAGAUUCAUAUUUACUUCUUAUA	chr15:45010110-45010349(+)$1	239	126	155	25.2780
UUAAAAGUAGUAUUCAUGAUUUCUGGCUU	chr1:66098878-66099164(+)$1	286	219	248	22.9323
AAGAAGAUACGUGGGCCAUAAGCAUCUUC	chr6:34845876-34846128(-)$1	252	8	37	23.7767
AUGAAAAUAAAUUUGAUGACUAUAUUUUC	chr2:15771022-15771274(+)$1	252	179	208	25.0615
UUGGGGACCUGAACUGUCCUGGAGGCCCC	chr12:118582579-118582851(+)$1	272	38	67	24.2277
GGCCGGCACCCCCUUCUGACCUCCAGUGC	chr12:7079637-7079891(-)$1	254	136	165	22.2876
GACUGUGUGCAUCAUUUGUAAGCUAGCAG	chr11:77327246-77327560(-)$1	314	95	124	21.5060
AGAUUAUUUCCUCUGAAUUUCUGGGCUUG	chr2:62095641-62095897(-)$1	256	154	183	24.0263
UUGAUACCCCUCUCCUCUUUUAGGUAACA	chr11:61556513-61556764(-)$1	251	34	63	21.2619
CAGUGACUUAGAGUUCUGUAAUAACUUAU	chr12:51453982-51454238(+)$1	256	129	158	23.3984
GUGAAACAUGUCUUUAGUUCCUCAUGUUA	chr6:7882582-7882801(-)$1	219	137	166	23.7349
GGUUAGUGUGAAAUAGUUCUGCCACCUCU	chr11:18428880-18429096(+)$1	216	168	197	23.9353
CCAGAGCAGGUUGUGCUGUCCCCUGCCUC	chr18:34376401-34376706(-)$1	305	111	140	23.4126
UUUUUUAAAUUUUUUCUGCCUAUUUAAAG	chrX:48435999-48436255(+)$1	256	17	46	23.9301
UGUCACAACUUUUUACUAAACAUGGCAGU	chr3:40499343-40499582(+)$1	239	144	173	21.8511
CUAAUAAUGUUAAGCACCAGUAAUUAUAG	chr3:179342068-179342301(+)$1	233	49	78	22.8863
UUCAUCCGUGUAACCCGCUCAUCACUGGA	chr11:34492910-34493140(+)$1	230	106	135	25.7505
CCAGGGACCGUAUUUUAUCUUCAGUGGCU	chr7:30673449-30673689(+)$1	240	125	154	22.7098
AUUCCAUGUGAAAGAAAGUGAGACAUGGA	chr6:27101140-27101413(+)$1	273	201	230	22.9916
GUUGGGCUCCUCUCUGCUGCUGGACCCAA	chr14:76117332-76117655(-)$1	323	203	232	23.2920
CACUGGGCUGUUGUUCCAUUGAAGCCGAC	chr15:72491435-72491659(-)$1	224	69	98	23.0897
GACAGAGGGGGUAUUGGGGUUAUUUUCUG	chr1:182352354-182352618(-)$1	264	104	133	25.1195
UUCAGCCAAGACCAUCUCUCCCUCCUGGU	chr2:26413885-26414140(-)$1	255	162	191	22.3037
CCCACAACACUGCCAAAAAUCUGUGUAUG	chr17:41167143-41167389(-)$1	246	143	172	23.6225
CUAGAUUUGUGUAUGUCUUUUAAACAGUU	chr20:43536931-43537194(+)$1	263	128	157	23.0376
UAAUAAACUGUUAAACCCACCUUCCAGCC	chr7:42956978-42957209(-)$1	231	180	209	22.5502
UAAGCAAUCCCACCCAAGCCUGGAUGCUU	chr17:40948780-40949053(+)$1	273	187	216	23.2864
CGGAAUGGAGACUUCUUACCCACCAGGCU	chr1:151234534-151234809(+)$1	275	124	153	22.8100
UUCCUCUUCCCCCUUUUCACUUUCCUGGA	chr16:31202791-31203007(+)$1	216	140	169	21.2561
GUAAAUACAUUUUUCUUUUUUAUGUAAUU	chr1:100757154-100757402(+)$1	248	174	203	23.3120
UGGCGUGGGAAAGGAGGUGUGAGUcccgg	chr12:111180489-111180785(-)$1	296	194	223	24.0377
AUUUUGAAAAAAUAAAGAACUAUCAGGAU	chr10:27400461-27400703(-)$1	242	5	34	19.4763
UGAUGGUUGCUUUCUUGAUUUUGUUUGCC	chr2:176042900-176043158(-)$1	258	108	137	24.0383
UAGAAUGUGAUUUUUGUUCCUUUUUAUUU	chrX:22012649-22012870(+)$1	221	75	104	22.7599
CAUCAUAUUUAAAUGUUCCGGUAAUGUGA	chr10:85912102-85912325(+)$1	223	118	147	25.0615
CACAAGAUUAUUUUCAGAAUUUAAUCUUU	chr11:111965777-111966037(+)$1	260	44	73	21.5103
AUUAUGUGAUUUUUCUGAUACGUCCAUUC	chr7:127732431-127732708(+)$1	277	93	122	24.1301

#DB
(...((((((..............)))))	chr11:77327160-77327404(-)$1	1	60	89	21.8663
((((((.((.............)).))))	chr6:170886174-170886446(-)$1	1	27	56	22.8997
((((((.(..............).)))))	chr12:42835561-42835825(+)$1	1	157	186	24.2152
.(((((................)))))))	chr1:245017390-245017614(-)$1	1	129	158	21.7816
((((((((((............)))))))	chr7:158523674-158523956(-)$1	1	144	173	25.6924
((((((((((...........))))))))	chr2:10269529-10269834(+)$1	1	13	42	24.4207
(..(((................)))))).	chr3:112719822-112720124(+)$1	1	63	92	21.4700
....(..((.............))..)..	chr22:29696189-29696443(+)$1	1	152	181	22.9013
(((((((................))))).	chr5:138665547-138665820(+)$1	1	218	247	22.1849
((.(((((..............))))).)	chr4:39455732-39455939(-)$1	1	95	124	22.8610
(((((..((((...........)))).))	chr11:18548291-18548566(-)$1	1	212	241	22.2451
(((((..(((..............))).)	chr2:128238379-128238635(-)$1	1	186	215	22.9788
((..(((((.............)))))..	chr16:56395863-56396127(-)$1	1	142	171	23.6780
.(((((((..............)))))))	chr16:85840243-85840470(+)$1	1	62	91	24.1438
(((..(((...............))))))	chr1:165631938-165632232(-)$1	1	221	250	19.3520
.(((((((..............)))))))	chr6:3153879-3154167(-)$1	1	236	265	24.1438
((((.(((((...........)))))..)	chr17:40353378-40353661(-)$1	1	248	277	22.4444
))).((((((................)))	chr15:89860186-89860437(+)$1	1	202	231	20.0801
(((((((.((...........))))))).	chr6:41757407-41757703(+)$1	1	112	141	22.8414
(((((.(((((...........)))))..	chrX:122734853-122735119(-)$1	1	1	30	22.3914
((((((((((............)))))))	chr15:45010110-45010349(+)$1	1	126	155	25.2780
((((((((((............)).))))	chr1:66098878-66099164(+)$1	1	219	248	22.9323
.(((((((.(...........).))))))	chr6:34845876-34846128(-)$1	1	8	37	23.7767
(((((((((.............)))))))	chr2:15771022-15771274(+)$1	1	179	208	25.0615
((((((.(((............)))))))	chr12:118582579-118582851(+)$1	1	38	67	24.2277
(((.(((((................))))	chr12:7079637-7079891(-)$1	1	136	165	22.2876
((((((..((...........))..))))	chr11:77327246-77327560(-)$1	1	95	124	21.5060
((((((..(((...........)))..))	chr2:62095641-62095897(-)$1	1	154	183	24.0263
.((.((((..............)))).))	chr11:61556513-61556764(-)$1	1	34	63	21.2619
((((((.(((...........))).))))	chr12:51453982-51454238(+)$1	1	129	158	23.3984
(((.((((((............)))))).	chr6:7882582-7882801(-)$1	1	137	166	23.7349
.(((((.(((............)))..))	chr11:18428880-18429096(+)$1	1	168	197	23.9353
((((((((((...........)))).)))	chr18:34376401-34376706(-)$1	1	111	140	23.4126
((((((((((...........))))))))	chrX:48435999-48436255(+)$1	1	17	46	23.9301
((((((..((.............))..))	chr3:40499343-40499582(+)$1	1	144	173	21.8511
(((.((((..............)))))))	chr3:179342068-179342301(+)$1	1	49	78	22.8863
((((((((((............))).)))	chr11:34492910-34493140(+)$1	1	106	135	25.7505
)((((.((((..............))).)	chr7:30673449-30673689(+)$1	1	125	154	22.7098
..(((((((.............)))))))	chr6:27101140-27101413(+)$1	1	201	230	22.9916
((((((.(((...........))))))))	chr14:76117332-76117655(-)$1	1	203	232	23.2920
(..(.((((.............)))).).	chr15:72491435-72491659(-)$1	1	69	98	23.0897
..(((((((.............)))))))	chr1:182352354-182352618(-)$1	1	104	133	25.1195
((((.(((.((...........)).))))	chr2:26413885-26414140(-)$1	1	162	191	22.3037
..((((((((............)))).))	chr17:41167143-41167389(-)$1	1	143	172	23.6225
(((((.((((.............)))).)	chr20:43536931-43537194(+)$1	1	128	157	23.0376
(((....(((..............)))..	chr7:42956978-42957209(-)$1	1	180	209	22.5502
((((((.(((...........))))))).	chr17:40948780-40949053(+)$1	1	187	216	23.2864
(((..(((..............)))..))	chr1:151234534-151234809(+)$1	1	124	153	22.8100
((..((((((................)))	chr16:31202791-31203007(+)$1	1	140	169	21.2561
.(((.(((((...........))))).))	chr1:100757154-100757402(+)$1	1	174	203	23.3120
((.(.(((((.............))))).	chr12:111180489-111180785(-)$1	1	194	223	24.0377
(((((((...............)))))))	chr10:27400461-27400703(-)$1	1	5	34	19.4763
..(((((.((............))..)))	chr2:176042900-176043158(-)$1	1	108	137	24.0383
.((((.((((.............))))))	chrX:22012649-22012870(+)$1	1	75	104	22.7599
(((((((((.............)))))))	chr10:85912102-85912325(+)$1	1	118	147	25.0615
....((((((...........))))))))	chr11:111965777-111966037(+)$1	1	44	73	21.5103
(..(((.(((...........))))))..	chr7:127732431-127732708(+)$1	1	93	122	24.1301

#PSSM
c : 0.17	f : 0.10	g : 0.08	d : 0.07	i : 0.07	e : 0.07	! : 0.07	h : 0.05	= : 0.05	b : 0.05	[ : 0.05	: : 0.05	$ : 0.03	# : 0.01	& : 0.01	H : 0.01	
g : 0.14	c : 0.12	e : 0.10	! : 0.10	f : 0.10	d : 0.08	i : 0.08	b : 0.07	h : 0.05	= : 0.05	$ : 0.03	" : 0.01	: : 0.01	
g : 0.15	e : 0.14	c : 0.10	f : 0.10	d : 0.10	! : 0.08	i : 0.08	h : 0.05	= : 0.05	$ : 0.03	[ : 0.03	" : 0.01	b : 0.01	
g : 0.17	e : 0.15	f : 0.08	d : 0.08	c : 0.07	! : 0.07	[ : 0.07	h : 0.05	= : 0.05	i : 0.05	$ : 0.03	a : 0.03	" : 0.01	: : 0.01	# : 0.01	
g : 0.17	f : 0.15	e : 0.15	d : 0.12	[ : 0.08	h : 0.05	= : 0.05	c : 0.05	i : 0.05	! : 0.03	a : 0.01	b : 0.01	# : 0.01	
e : 0.21	g : 0.17	f : 0.10	d : 0.10	c : 0.08	[ : 0.07	h : 0.05	= : 0.05	! : 0.05	i : 0.05	b : 0.01	# : 0.01	
e : 0.17	[ : 0.14	g : 0.14	d : 0.12	! : 0.10	f : 0.08	c : 0.05	i : 0.05	y : 0.03	= : 0.03	h : 0.01	a : 0.01	# : 0.01	
c : 0.22	d : 0.14	e : 0.12	g : 0.10	f : 0.08	y : 0.05	i : 0.05	! : 0.05	b : 0.03	= : 0.03	[ : 0.03	a : 0.01	h : 0.01	x : 0.01	
c : 0.19	b : 0.12	w : 0.12	d : 0.10	e : 0.10	f : 0.08	y : 0.05	g : 0.05	i : 0.05	= : 0.03	x : 0.03	[ : 0.03	
c : 0.19	v : 0.14	w : 0.12	b : 0.10	f : 0.08	d : 0.08	y : 0.07	e : 0.07	= : 0.03	x : 0.03	g : 0.01	a : 0.01	i : 0.01	
t : 0.22	v : 0.21	w : 0.19	u : 0.15	y : 0.10	x : 0.03	d : 0.01	e : 0.01	c : 0.01	b : 0.01	
t : 0.29	v : 0.21	w : 0.19	u : 0.15	y : 0.10	x : 0.03	
t : 0.29	v : 0.21	w : 0.19	u : 0.15	y : 0.10	x : 0.03	
t : 0.29	v : 0.21	w : 0.19	u : 0.15	y : 0.10	x : 0.03	
t : 0.29	v : 0.21	w : 0.19	u : 0.15	y : 0.10	x : 0.03	
t : 0.29	v : 0.21	w : 0.19	u : 0.15	y : 0.10	x : 0.03	
t : 0.29	v : 0.21	w : 0.19	u : 0.15	y : 0.10	x : 0.03	
t : 0.29	v : 0.21	w : 0.19	u : 0.15	y : 0.10	x : 0.03	
t : 0.29	v : 0.21	w : 0.19	u : 0.15	y : 0.10	x : 0.03	
t : 0.29	v : 0.21	w : 0.19	u : 0.15	y : 0.10	x : 0.03	
t : 0.29	v : 0.21	w : 0.19	u : 0.15	y : 0.10	x : 0.03	
v : 0.21	w : 0.19	u : 0.15	y : 0.10	t : 0.07	c : 0.07	x : 0.03	e : 0.03	b : 0.03	= : 0.01	a : 0.01	d : 0.01	i : 0.01	f : 0.01	
c : 0.17	b : 0.12	e : 0.10	d : 0.10	g : 0.10	w : 0.07	y : 0.07	v : 0.07	i : 0.05	= : 0.03	f : 0.03	a : 0.01	x : 0.01	] : 0.01	
c : 0.19	e : 0.15	d : 0.14	g : 0.12	b : 0.10	w : 0.07	y : 0.05	i : 0.05	= : 0.03	f : 0.03	] : 0.01	2 : 0.01	
c : 0.19	e : 0.17	d : 0.15	g : 0.14	] : 0.07	f : 0.05	2 : 0.05	y : 0.05	i : 0.05	= : 0.03	b : 0.01	
e : 0.19	d : 0.15	g : 0.14	c : 0.12	2 : 0.10	f : 0.07	h : 0.05	i : 0.05	= : 0.03	y : 0.03	] : 0.03	
g : 0.17	e : 0.17	c : 0.14	f : 0.10	] : 0.08	2 : 0.08	d : 0.07	h : 0.05	i : 0.05	= : 0.03	a : 0.01	
g : 0.17	e : 0.15	c : 0.10	f : 0.08	d : 0.08	] : 0.07	h : 0.05	= : 0.05	2 : 0.05	i : 0.05	3 : 0.03	b : 0.03	a : 0.01	4 : 0.01	
g : 0.17	f : 0.12	e : 0.12	d : 0.08	c : 0.07	2 : 0.07	h : 0.05	= : 0.05	3 : 0.05	i : 0.05	] : 0.03	b : 0.03	: : 0.01	a : 0.01	5 : 0.01	4 : 0.01	

#score	1314.2471565623491
#seq	57
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_transcript_m1_run1.txt

#BEAR
"""cccyyyyyyyyyyyyyyyyccc2	chr16:31197685-31197899(+)$1	214	122	148	22.5326
"""ddddvvvvvvvvvvvvvdddd22	chr2:168767336-168767626(-)$1	290	89	115	23.3338
iiii[cccuuuuuuuuuuuuccc]ii	chr11:65267566-65267773(+)$1	207	114	140	25.6524
iiii[cccuuuuuuuuuuuuccc]ii	chr11:65267526-65267735(+)$1	209	154	180	25.6524
iiii[cccuuuuuuuuuuuuccc]ii	chr11:65267535-65267742(+)$1	207	145	171	25.6524
eeeedddduuuuuuuuuuuudddd55	chr1:219372706-219372941(+)$1	235	44	70	22.2106
%eeeeewwwwwwwwwwwwwweeeee6	chr18:2736181-2736475(+)$1	294	194	220	21.4293
eee"""ccctttttttttttccc22e	chr8:91018539-91018879(+)$1	340	198	224	22.6582
b!!eeeeettttttttttteeeee22	chr22:20913167-20913444(+)$1	277	212	238	22.7630
========uuuuuuuuuuuu======	chr3:6590059-6590355(+)$1	296	258	284	25.1226
iiii[cccuuuuuuuuuuuuccc]ii	chr11:65267542-65267756(+)$1	214	138	164	25.6524
c!!eeeeeuuuuuuuuuuuueeeeec	chr22:48185232-48185532(+)$1	300	230	256	24.5913
[bb!!ddddtttttttttttdddd]b	chr11:65267697-65267902(+)$1	205	142	168	22.7707
[ggggggguuuuuuuuuuuugggggg	chr7:119345060-119345351(-)$1	291	74	100	24.8395
hh####ccctttttttttttccc444	chr3:160150795-160151038(+)$1	243	157	183	22.9172
iiii[cccuuuuuuuuuuuuccc]ii	chr11:65267520-65267723(+)$1	203	160	186	25.6524
b[ffffffuuuuuuuuuuuuffffff	chr21:38839447-38839675(+)$1	228	140	166	24.1487
!!eeeeevvvvvvvvvvvvveeeeed	chr7:119491826-119492117(-)$1	291	162	188	23.7993
ccc[dddduuuuuuuuuuuudddd]c	chr21:45164034-45164295(+)$1	261	66	92	24.3185
ggggddddvvvvvvvvvvvvvdddd2	chr15:27346010-27346332(+)$1	322	139	165	23.2202
b[ffffffuuuuuuuuuuuuffffff	chr21:38839475-38839707(+)$1	232	112	138	24.1487
:::eeeeeuuuuuuuuuuuueeeeee	chr22:17126425-17126681(+)$1	256	53	79	21.4713
ffffffffuuuuuuuuuuuuffffff	chr3:6608955-6609218(+)$1	263	127	153	23.8989
ggg[dddduuuuuuuuuuuudddd]g	chr5:6723870-6724140(+)$1	270	86	112	24.6474
!!cccbbyyyyyyyyyyyyyyyybb]	chr19:21631046-21631313(-)$1	267	191	217	21.4665
!!eeeeewwwwwwwwwwwwwweeeee	chr11:65267477-65267688(+)$1	211	99	125	23.3285
hhhhhhhhuuuuuuuuuuuuhhhhhh	chr9:126029893-126030169(-)$1	276	32	58	21.6387
&&fffffftttttttttttffffff6	chr2:152319594-152319919(+)$1	325	165	191	21.2307
"ffffffvvvvvvvvvvvvvffffff	chr9:133482986-133483276(+)$1	290	70	96	23.4407
"""eeeeettttttttttteeeeeee	chr12:6618163-6618398(+)$1	235	73	99	23.2854
iiiiiiiivvvvvvvvvvvvviiiii	chr8:53569095-53569403(-)$1	308	242	268	23.8941
!!a!!bbyyyyyyyyyyyyyyyybb2	chr17:20800454-20800720(+)$1	266	180	206	21.7222
HHeeeeewwwwwwwwwwwwwweeeee	chr11:5443360-5443645(-)$1	285	11	37	21.6458
i:ffffffuuuuuuuuuuuuffffff	chr2:109380765-109381053(+)$1	288	47	73	23.3704
::ffffffuuuuuuuuuuuuffffff	chr22:50001185-50001471(-)$1	286	77	103	22.3881
!!ffffffyyyyyyyyyyyyyyyyff	chr11:65350441-65350699(+)$1	258	83	109	22.1068
[gggggggwwwwwwwwwwwwwwgggg	chr3:25667994-25668255(-)$1	261	65	91	23.0947
iiii[cccuuuuuuuuuuuuccc]ii	chr11:65267662-65267869(+)$1	207	18	44	25.6524
fff[ddddwwwwwwwwwwwwwwdddd	chrX:135956798-135957053(-)$1	255	116	142	21.9717
iiii[cccuuuuuuuuuuuuccc]ii	chr11:65267657-65267862(+)$1	205	23	49	25.6524
ffffffyyyyyyyyyyyyyyyyffff	chr8:41598952-41599202(-)$1	250	217	243	21.9736
c####cccuuuuuuuuuuuuccc444	chr1:202491665-202491997(+)$1	332	151	177	24.9861
[a!!dddduuuuuuuuuuuudddd22	chr1:155447776-155448047(-)$1	271	185	211	24.4074
dddd[ccctttttttttttccc]ddd	chr7:87498686-87498956(-)$1	270	111	137	22.3090
ccc[dddduuuuuuuuuuuudddd]c	chr21:45164016-45164234(+)$1	218	84	110	24.3185
ffffffwwwwwwwwwwwwwwffffff	chr4:17934290-17934609(-)$1	319	197	223	22.0401
[bb!!ddddtttttttttttdddd]b	chr11:65267727-65267936(+)$1	209	112	138	22.7707
$ffffffvvvvvvvvvvvvvffffff	chr1:236966263-236966553(+)$1	290	141	167	23.2116
cc!!ddddattttttttttta]dddd	chr7:119344750-119345016(-)$1	266	165	191	23.0351
Hbbeeeeettttttttttteeeee]b	chr22:48193985-48194316(+)$1	331	189	215	21.8167
[bb!!ddddtttttttttttdddd]b	chr11:65267736-65267943(+)$1	207	103	129	22.7707
"gggggggvvvvvvvvvvvvvggggg	chr7:129742850-129743144(+)$1	294	198	224	24.0016
e[a!!cccuuuuuuuuuuuuccc22a	chr1:111490755-111491014(-)$1	259	166	192	24.8482
iiii[cccuuuuuuuuuuuuccc]ii	chr11:65267585-65267801(+)$1	216	95	121	25.6524
eeeeeyyyyyyyyyyyyyyyyeeeee	chr2:128259775-128260044(-)$1	269	25	51	21.6691
##fffffftttttttttttfffffff	chr16:20717569-20717884(+)$1	315	39	65	23.0287
!!eeeeewwwwwwwwwwwwwweeeee	chr11:65267454-65267656(+)$1	202	122	148	23.3285
iiii[cccuuuuuuuuuuuuccc]ii	chr11:65267579-65267785(+)$1	206	101	127	25.6524
========uuuuuuuuuuuu======	chr2:152321203-152321518(+)$1	315	23	49	25.1226
!!eeeeewwwwwwwwwwwwwweeeee	chr11:65267418-65267633(+)$1	215	158	184	23.3285
!!ffffffwwwwwwwwwwwwwwffff	chr3:42679138-42679394(+)$1	256	5	31	22.9819

#otherMatches

#Seq PSSM
CAAGAGGAAAAAAAAACAUCUGCUCC	chr16:31197685-31197899(+)$1	214	122	148	22.5326
aaaauacaaaaguuagccuggugugg	chr2:168767336-168767626(-)$1	290	89	115	23.3338
UUUUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267566-65267773(+)$1	207	114	140	25.6524
UUUUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267526-65267735(+)$1	209	154	180	25.6524
UUUUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267535-65267742(+)$1	207	145	171	25.6524
AUCAAACCUCUCUUAAAGCUGGUUAA	chr1:219372706-219372941(+)$1	235	44	70	22.2106
gcaguuacaacacaaacaaaaauuga	chr18:2736181-2736475(+)$1	294	194	220	21.4293
GGUGGGAGUGGAGACAAAUGGCUAAA	chr8:91018539-91018879(+)$1	340	198	224	22.6582
cuauggugaacuaucauugcaccacu	chr22:20913167-20913444(+)$1	277	212	238	22.7630
AAGAGAAAAGUUACUCAAAAUUUCUU	chr3:6590059-6590355(+)$1	296	258	284	25.1226
UUUUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267542-65267756(+)$1	214	138	164	25.6524
ugagucuguaauucuaugcccagaca	chr22:48185232-48185532(+)$1	300	230	256	24.5913
AGGACUAGCAUUAAUUGACAGCUGAC	chr11:65267697-65267902(+)$1	205	142	168	22.7707
caguaaaaaagaaauaaagauuuugc	chr7:119345060-119345351(-)$1	291	74	100	24.8395
GCCCUUGAUUUUAAAAAUGUGUCCAU	chr3:160150795-160151038(+)$1	243	157	183	22.9172
UUUUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267520-65267723(+)$1	203	160	186	25.6524
guggugcaaucauggcucacugcacc	chr21:38839447-38839675(+)$1	228	140	166	24.1487
aucugaauauugaacuacauuucagc	chr7:119491826-119492117(-)$1	291	162	188	23.7993
GGGAGUGGGGGGAGGGAGGGUCACAC	chr21:45164034-45164295(+)$1	261	66	92	24.3185
gauuggcaagaguaaaauaagugucc	chr15:27346010-27346332(+)$1	322	139	165	23.2202
guggugcaaucauggcucacugcacc	chr21:38839475-38839707(+)$1	232	112	138	24.1487
GAAAUCAGAAUAACUUCACACUGGUC	chr22:17126425-17126681(+)$1	256	53	79	21.4713
CUGGAUAUGAUACAUAUAAAAUAUCC	chr3:6608955-6609218(+)$1	263	127	153	23.8989
cuugagguguuccagaacuggccugg	chr5:6723870-6724140(+)$1	270	86	112	24.6474
ccacuccuauucaacacaguauugga	chr19:21631046-21631313(-)$1	267	191	217	21.4665
AAUUUAGAAGAAUACUUGAAGCUAGA	chr11:65267477-65267688(+)$1	211	99	125	23.3285
UUCAAGAGGGAAUGAGGGGGCUUUUG	chr9:126029893-126030169(-)$1	276	32	58	21.6387
UAUUUCAUCAACUGUUACAGUGAAAA	chr2:152319594-152319919(+)$1	325	165	191	21.2307
CCCAGCGCCCCUGAUCUAACUGCUGG	chr9:133482986-133483276(+)$1	290	70	96	23.4407
aaacuUUUUUUUUUUUUUUAAAAGAU	chr12:6618163-6618398(+)$1	235	73	99	23.2854
UUUGCUGGAAGAAAGCAGAGCCCAGC	chr8:53569095-53569403(-)$1	308	242	268	23.8941
aaucacugagaugaguauugcaaagg	chr17:20800454-20800720(+)$1	266	180	206	21.7222
CAGCAUGGAGAGAAACAGAUACAUGC	chr11:5443360-5443645(-)$1	285	11	37	21.6458
AUGAGUUGCCAAAACCAGAACAACUU	chr2:109380765-109381053(+)$1	288	47	73	23.3704
ugucccuaacauauuuuuaauaggga	chr22:50001185-50001471(-)$1	286	77	103	22.3881
AGGGAUCCAGGUGAAAGAGGUUGGGG	chr11:65350441-65350699(+)$1	258	83	109	22.1068
UAUUGCUAUAUAACUUUUCUCUUAGC	chr3:25667994-25668255(-)$1	261	65	91	23.0947
UUUUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267662-65267869(+)$1	207	18	44	25.6524
AAUAUGAAGGCAAGUUCUACAGUUCA	chrX:135956798-135957053(-)$1	255	116	142	21.9717
UUUUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267657-65267862(+)$1	205	23	49	25.6524
gcugggauuaaaaaccaucacaccca	chr8:41598952-41599202(-)$1	250	217	243	21.9736
GAAAGAUAAAAAAAUACAAGUAUAAG	chr1:202491665-202491997(+)$1	332	151	177	24.9861
GUGAUGAACAUACAAACCUUUUCACA	chr1:155447776-155448047(-)$1	271	185	211	24.4074
gggucucacuuugucacuuugacacc	chr7:87498686-87498956(-)$1	270	111	137	22.3090
GGGAGUGGGGGGAGGGAGGGUCACAC	chr21:45164016-45164234(+)$1	218	84	110	24.3185
uauggucucuguugcaauucaccaua	chr4:17934290-17934609(-)$1	319	197	223	22.0401
AGGACUAGCAUUAAUUGACAGCUGAC	chr11:65267727-65267936(+)$1	209	112	138	22.7707
AACAAGGAAAGAGAGCAAAGUCUUGU	chr1:236966263-236966553(+)$1	290	141	167	23.2116
agccaaagcagacuaauacagacuuu	chr7:119344750-119345016(-)$1	266	165	191	23.0351
ugagcuuagggaaggaagauaaguau	chr22:48193985-48194316(+)$1	331	189	215	21.8167
AGGACUAGCAUUAAUUGACAGCUGAC	chr11:65267736-65267943(+)$1	207	103	129	22.7707
aggccaggauuucaagaccagccugg	chr7:129742850-129743144(+)$1	294	198	224	24.0016
CACGAGUCACAGCAAAACCAGACAAG	chr1:111490755-111491014(-)$1	259	166	192	24.8482
UUUUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267585-65267801(+)$1	216	95	121	25.6524
cugcucauuaucuaggaacaaaguag	chr2:128259775-128260044(-)$1	269	25	51	21.6691
aaucaaaaagaagauaaaauuuugaa	chr16:20717569-20717884(+)$1	315	39	65	23.0287
AAUUUAGAAGAAUACUUGAAGCUAGA	chr11:65267454-65267656(+)$1	202	122	148	23.3285
UUUUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267579-65267785(+)$1	206	101	127	25.6524
UUGUGAUUGCUGUGGGGAAAAAUCAC	chr2:152321203-152321518(+)$1	315	23	49	25.1226
AAUUUAGAAGAAUACUUGAAGCUAGA	chr11:65267418-65267633(+)$1	215	158	184	23.3285
UACAGUUUAGCAAAUAUUAAAGAGAC	chr3:42679138-42679394(+)$1	256	5	31	22.9819

#DB
...(((................))).	chr16:31197685-31197899(+)$1	1	122	148	22.5326
...((((.............))))..	chr2:168767336-168767626(-)$1	1	89	115	23.3338
((((.(((............))).))	chr11:65267566-65267773(+)$1	1	114	140	25.6524
((((.(((............))).))	chr11:65267526-65267735(+)$1	1	154	180	25.6524
((((.(((............))).))	chr11:65267535-65267742(+)$1	1	145	171	25.6524
((((((((............))))..	chr1:219372706-219372941(+)$1	1	44	70	22.2106
.(((((..............))))).	chr18:2736181-2736475(+)$1	1	194	220	21.4293
(((...(((...........)))..)	chr8:91018539-91018879(+)$1	1	198	224	22.6582
(..(((((...........)))))..	chr22:20913167-20913444(+)$1	1	212	238	22.7630
((((((((............))))))	chr3:6590059-6590355(+)$1	1	258	284	25.1226
((((.(((............))).))	chr11:65267542-65267756(+)$1	1	138	164	25.6524
(..(((((............))))))	chr22:48185232-48185532(+)$1	1	230	256	24.5913
.((..((((...........)))).)	chr11:65267697-65267902(+)$1	1	142	168	22.7707
.(((((((............))))))	chr7:119345060-119345351(-)$1	1	74	100	24.8395
((....(((...........)))...	chr3:160150795-160151038(+)$1	1	157	183	22.9172
((((.(((............))).))	chr11:65267520-65267723(+)$1	1	160	186	25.6524
(.((((((............))))))	chr21:38839447-38839675(+)$1	1	140	166	24.1487
..(((((.............))))))	chr7:119491826-119492117(-)$1	1	162	188	23.7993
(((.((((............)))).)	chr21:45164034-45164295(+)$1	1	66	92	24.3185
((((((((.............)))).	chr15:27346010-27346332(+)$1	1	139	165	23.2202
(.((((((............))))))	chr21:38839475-38839707(+)$1	1	112	138	24.1487
...(((((............)))))(	chr22:17126425-17126681(+)$1	1	53	79	21.4713
))((((((............))))))	chr3:6608955-6609218(+)$1	1	127	153	23.8989
(((.((((............)))).)	chr5:6723870-6724140(+)$1	1	86	112	24.6474
..(((((................)).	chr19:21631046-21631313(-)$1	1	191	217	21.4665
..(((((..............)))))	chr11:65267477-65267688(+)$1	1	99	125	23.3285
((((((((............))))))	chr9:126029893-126030169(-)$1	1	32	58	21.6387
..((((((...........)))))).	chr2:152319594-152319919(+)$1	1	165	191	21.2307
.((((((.............))))))	chr9:133482986-133483276(+)$1	1	70	96	23.4407
...(((((...........)))))))	chr12:6618163-6618398(+)$1	1	73	99	23.2854
((((((((.............)))))	chr8:53569095-53569403(-)$1	1	242	268	23.8941
..(..((................)).	chr17:20800454-20800720(+)$1	1	180	206	21.7222
(((((((..............)))))	chr11:5443360-5443645(-)$1	1	11	37	21.6458
).((((((............))))))	chr2:109380765-109381053(+)$1	1	47	73	23.3704
..((((((............))))))	chr22:50001185-50001471(-)$1	1	77	103	22.3881
..((((((................))	chr11:65350441-65350699(+)$1	1	83	109	22.1068
.(((((((..............))))	chr3:25667994-25668255(-)$1	1	65	91	23.0947
((((.(((............))).))	chr11:65267662-65267869(+)$1	1	18	44	25.6524
(((.((((..............))))	chrX:135956798-135957053(-)$1	1	116	142	21.9717
((((.(((............))).))	chr11:65267657-65267862(+)$1	1	23	49	25.6524
((((((................))))	chr8:41598952-41599202(-)$1	1	217	243	21.9736
(....(((............)))...	chr1:202491665-202491997(+)$1	1	151	177	24.9861
.(..((((............))))..	chr1:155447776-155448047(-)$1	1	185	211	24.4074
((((.(((...........))).)))	chr7:87498686-87498956(-)$1	1	111	137	22.3090
(((.((((............)))).)	chr21:45164016-45164234(+)$1	1	84	110	24.3185
((((((..............))))))	chr4:17934290-17934609(-)$1	1	197	223	22.0401
.((..((((...........)))).)	chr11:65267727-65267936(+)$1	1	112	138	22.7707
.((((((.............))))))	chr1:236966263-236966553(+)$1	1	141	167	23.2116
((..(((((...........).))))	chr7:119344750-119345016(-)$1	1	165	191	23.0351
)(((((((...........))))).)	chr22:48193985-48194316(+)$1	1	189	215	21.8167
.((..((((...........)))).)	chr11:65267736-65267943(+)$1	1	103	129	22.7707
.(((((((.............)))))	chr7:129742850-129743144(+)$1	1	198	224	24.0016
(.(..(((............)))..)	chr1:111490755-111491014(-)$1	1	166	192	24.8482
((((.(((............))).))	chr11:65267585-65267801(+)$1	1	95	121	25.6524
(((((................)))))	chr2:128259775-128260044(-)$1	1	25	51	21.6691
..((((((...........)))))))	chr16:20717569-20717884(+)$1	1	39	65	23.0287
..(((((..............)))))	chr11:65267454-65267656(+)$1	1	122	148	23.3285
((((.(((............))).))	chr11:65267579-65267785(+)$1	1	101	127	25.6524
((((((((............))))))	chr2:152321203-152321518(+)$1	1	23	49	25.1226
..(((((..............)))))	chr11:65267418-65267633(+)$1	1	158	184	23.3285
..((((((..............))))	chr3:42679138-42679394(+)$1	1	5	31	22.9819

#PSSM
i : 0.18	! : 0.13	[ : 0.09	" : 0.08	c : 0.08	e : 0.06	f : 0.06	b : 0.04	= : 0.03	h : 0.03	g : 0.03	: : 0.03	H : 0.03	% : 0.01	& : 0.01	d : 0.01	$ : 0.01	# : 0.01	
i : 0.16	! : 0.16	f : 0.09	g : 0.08	e : 0.06	b : 0.06	" : 0.04	[ : 0.04	c : 0.04	: : 0.04	= : 0.03	h : 0.03	# : 0.03	& : 0.01	H : 0.01	a : 0.01	d : 0.01	
f : 0.22	i : 0.16	e : 0.14	g : 0.08	! : 0.06	b : 0.06	" : 0.04	c : 0.04	= : 0.03	# : 0.03	a : 0.03	: : 0.01	h : 0.01	d : 0.01	
e : 0.21	f : 0.21	i : 0.16	! : 0.11	g : 0.06	[ : 0.06	c : 0.03	d : 0.03	= : 0.03	# : 0.03	" : 0.01	h : 0.01	
f : 0.21	e : 0.19	[ : 0.16	d : 0.14	! : 0.08	g : 0.04	c : 0.03	= : 0.03	# : 0.03	" : 0.01	h : 0.01	i : 0.01	
c : 0.21	f : 0.21	d : 0.19	e : 0.18	g : 0.04	= : 0.03	b : 0.03	" : 0.01	# : 0.01	h : 0.01	i : 0.01	y : 0.01	
c : 0.22	d : 0.19	f : 0.18	e : 0.16	y : 0.04	g : 0.04	w : 0.03	= : 0.03	b : 0.03	h : 0.01	i : 0.01	
c : 0.22	d : 0.18	f : 0.14	w : 0.09	y : 0.08	e : 0.08	v : 0.06	g : 0.04	= : 0.03	h : 0.01	i : 0.01	
u : 0.44	w : 0.14	v : 0.11	y : 0.09	t : 0.09	d : 0.04	c : 0.03	a : 0.01	
u : 0.44	t : 0.19	w : 0.14	v : 0.11	y : 0.09	
u : 0.44	t : 0.19	w : 0.14	v : 0.11	y : 0.09	
u : 0.44	t : 0.19	w : 0.14	v : 0.11	y : 0.09	
u : 0.44	t : 0.19	w : 0.14	v : 0.11	y : 0.09	
u : 0.44	t : 0.19	w : 0.14	v : 0.11	y : 0.09	
u : 0.44	t : 0.19	w : 0.14	v : 0.11	y : 0.09	
u : 0.44	t : 0.19	w : 0.14	v : 0.11	y : 0.09	
u : 0.44	t : 0.19	w : 0.14	v : 0.11	y : 0.09	
u : 0.44	t : 0.19	w : 0.14	v : 0.11	y : 0.09	
u : 0.44	t : 0.19	w : 0.14	v : 0.11	y : 0.09	
u : 0.44	w : 0.14	v : 0.11	y : 0.09	t : 0.09	e : 0.04	f : 0.03	c : 0.01	
c : 0.22	f : 0.16	d : 0.14	e : 0.11	w : 0.11	y : 0.09	v : 0.04	= : 0.03	g : 0.01	h : 0.01	a : 0.01	
c : 0.22	e : 0.19	d : 0.16	f : 0.16	y : 0.08	w : 0.04	= : 0.03	g : 0.03	h : 0.01	i : 0.01	] : 0.01	
c : 0.22	d : 0.19	e : 0.19	f : 0.19	g : 0.04	y : 0.04	= : 0.03	h : 0.01	i : 0.01	] : 0.01	
d : 0.21	e : 0.19	f : 0.19	] : 0.14	g : 0.04	2 : 0.03	= : 0.03	4 : 0.03	b : 0.03	c : 0.01	h : 0.01	i : 0.01	y : 0.01	
f : 0.21	i : 0.16	e : 0.16	] : 0.11	2 : 0.08	d : 0.06	g : 0.04	= : 0.03	4 : 0.03	b : 0.03	c : 0.01	5 : 0.01	h : 0.01	
f : 0.19	i : 0.16	e : 0.13	2 : 0.09	b : 0.06	g : 0.06	d : 0.06	c : 0.04	6 : 0.03	= : 0.03	4 : 0.03	5 : 0.01	] : 0.01	h : 0.01	a : 0.01	

#score	1432.2299179900292
#seq	61
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF233ZXV_DHX30_CDS_m2_run2.txt

#BEAR
((((a[eeeee[apppppppa]eeeee]a88	chrM:14201-14404(-)$1	203	30	61	15.7694
b!!ccc####cccpppppppccc4444ccc2	chrM:12691-12902(+)$1	211	124	155	22.8470
####a[eeeee[apppppppa]eeeee]a55	chrM:14184-14399(-)$1	215	25	56	17.8644
a[bb!!ccc!!bbpppppppbb4444ccc22	chr11:618790-619005(-)$1	215	155	186	20.4290
fffff"""bb[bbpppppppbbbb]ffffff	chrM:5917-6152(+)$1	235	79	110	16.0859
=========[cccrrrrrrrrrccc]=====	chrM:14245-14492(-)$1	247	7	38	15.8034
ii####gggggggpppppppggggggg22ii	chrM:14364-14574(-)$1	210	142	173	17.2215
fff"""a!!ddddpppppppdddd22a4444	chr22:38054743-38055036(+)$1	293	196	227	18.3602
b!!ccc####cccpppppppccc4444ccc2	chrM:12751-12970(+)$1	219	64	95	22.8470
b!!ccc####cccpppppppccc4444ccc2	chrM:12702-12925(+)$1	223	113	144	22.8470
"""ddddffffffpppppppffffff4444d	chr11:62293167-62293470(-)$1	303	95	126	16.6312
======####cccssssssssssccc]====	chr2:20196840-20197072(-)$1	232	62	93	12.7178
:gggggggeeeeepppppppeeeee]ggggg	chr1:1374853-1375099(+)$1	246	1	32	15.5760
a[bb!!ccc!!bbpppppppbb4444ccc22	chr11:618786-618990(-)$1	204	47	78	20.4290
b!!ccc####cccpppppppccc4444ccc2	chrM:12725-12951(+)$1	226	90	121	22.8470

#otherMatches

#Seq PSSM
GGAUUGGUGCUGUGGGUGAAAGAGUAUGAUG	chrM:14201-14404(-)$1	203	30	61	15.7694
CCCGAGCAGAUGCCAACACAGCAGCCAUUCA	chrM:12691-12902(+)$1	211	124	155	22.8470
GGAUUGGUGCUGUGGGUGAAAGAGUAUGAUG	chrM:14184-14399(-)$1	215	25	56	17.8644
CAGCACAGACCCCAGAGCCAGGAACCUCUCA	chr11:618790-619005(-)$1	215	155	186	20.4290
AGCUCUAAGCCUCCUUAUUCGAGCCGAGCUG	chrM:5917-6152(+)$1	235	79	110	16.0859
AUGGUUGUCUUUGGAUAUACUACAGCGAUGG	chrM:14245-14492(-)$1	247	7	38	15.8034
AUGGGGGUCAGGGGUUGAGGUCUUGGUGAGU	chrM:14364-14574(-)$1	210	142	173	17.2215
GGCAAGGCGGCUCUGUUUGUGAGCAACAACA	chr22:38054743-38055036(+)$1	293	196	227	18.3602
CCCGAGCAGAUGCCAACACAGCAGCCAUUCA	chrM:12751-12970(+)$1	219	64	95	22.8470
CCCGAGCAGAUGCCAACACAGCAGCCAUUCA	chrM:12702-12925(+)$1	223	113	144	22.8470
AGAUAUUGACCUGAAUCUCACAGGUCCAAAA	chr11:62293167-62293470(-)$1	303	95	126	16.6312
GUGUGCCCUAGGCUCUCAUGGUUGCCAGCAC	chr2:20196840-20197072(-)$1	232	62	93	12.7178
CGCCCGGCCGCGCAGCCUCCGCGUGAGUUGG	chr1:1374853-1375099(+)$1	246	1	32	15.5760
CAGCACAGACCCCAAAGCCAGGAACCUCUCA	chr11:618786-618990(-)$1	204	47	78	20.4290
CCCGAGCAGAUGCCAACACAGCAGCCAUUCA	chrM:12725-12951(+)$1	226	90	121	22.8470

#DB
....(.(((((.(.......).))))).)..	chrM:14201-14404(-)$1	1	30	61	15.7694
(..(((....(((.......)))....))).	chrM:12691-12902(+)$1	1	124	155	22.8470
....(.(((((.(.......).))))).)..	chrM:14184-14399(-)$1	1	25	56	17.8644
(.((..(((..((.......))....)))..	chr11:618790-619005(-)$1	1	155	186	20.4290
(((((...((.((.......)))).))))))	chrM:5917-6152(+)$1	1	79	110	16.0859
(((((((((.(((.........))).)))))	chrM:14245-14492(-)$1	1	7	38	15.8034
((....(((((((.......)))))))..))	chrM:14364-14574(-)$1	1	142	173	17.2215
(((...(..((((.......))))..)....	chr22:38054743-38055036(+)$1	1	196	227	18.3602
(..(((....(((.......)))....))).	chrM:12751-12970(+)$1	1	64	95	22.8470
(..(((....(((.......)))....))).	chrM:12702-12925(+)$1	1	113	144	22.8470
...((((((((((.......))))))....)	chr11:62293167-62293470(-)$1	1	95	126	16.6312
((((((....(((..........))).))))	chr2:20196840-20197072(-)$1	1	62	93	12.7178
.((((((((((((.......))))).)))))	chr1:1374853-1375099(+)$1	1	1	32	15.5760
(.((..(((..((.......))....)))..	chr11:618786-618990(-)$1	1	47	78	20.4290
(..(((....(((.......)))....))).	chrM:12725-12951(+)$1	1	90	121	22.8470

#PSSM
b : 0.26	a : 0.13	f : 0.13	= : 0.13	( : 0.06	# : 0.06	i : 0.06	" : 0.06	: : 0.06	
! : 0.26	[ : 0.13	f : 0.13	= : 0.13	( : 0.06	# : 0.06	i : 0.06	" : 0.06	g : 0.06	
! : 0.26	# : 0.13	b : 0.13	f : 0.13	= : 0.13	( : 0.06	" : 0.06	g : 0.06	
c : 0.26	# : 0.13	b : 0.13	= : 0.13	( : 0.06	f : 0.06	" : 0.06	d : 0.06	g : 0.06	
c : 0.26	a : 0.13	! : 0.13	= : 0.13	f : 0.06	# : 0.06	" : 0.06	d : 0.06	g : 0.06	
c : 0.26	[ : 0.13	! : 0.13	" : 0.13	= : 0.13	# : 0.06	d : 0.06	g : 0.06	
# : 0.33	e : 0.13	c : 0.13	g : 0.13	" : 0.06	= : 0.06	a : 0.06	d : 0.06	
# : 0.33	e : 0.13	c : 0.13	g : 0.13	" : 0.06	= : 0.06	! : 0.06	f : 0.06	
# : 0.33	e : 0.20	c : 0.13	b : 0.06	= : 0.06	g : 0.06	! : 0.06	f : 0.06	
# : 0.33	e : 0.20	! : 0.13	b : 0.06	[ : 0.06	g : 0.06	d : 0.06	f : 0.06	
c : 0.39	e : 0.20	! : 0.13	[ : 0.06	g : 0.06	d : 0.06	f : 0.06	
c : 0.39	b : 0.20	[ : 0.13	g : 0.06	d : 0.06	f : 0.06	e : 0.06	
c : 0.39	b : 0.20	a : 0.13	g : 0.06	d : 0.06	f : 0.06	e : 0.06	
p : 0.86	r : 0.06	s : 0.06	
p : 0.86	r : 0.06	s : 0.06	
p : 0.86	r : 0.06	s : 0.06	
p : 0.86	r : 0.06	s : 0.06	
p : 0.86	r : 0.06	s : 0.06	
p : 0.86	r : 0.06	s : 0.06	
p : 0.86	r : 0.06	s : 0.06	
c : 0.26	b : 0.20	a : 0.13	r : 0.06	g : 0.06	d : 0.06	f : 0.06	s : 0.06	e : 0.06	
c : 0.26	b : 0.20	] : 0.13	r : 0.06	g : 0.06	d : 0.06	f : 0.06	s : 0.06	e : 0.06	
c : 0.33	e : 0.20	4 : 0.13	b : 0.06	g : 0.06	d : 0.06	f : 0.06	s : 0.06	
4 : 0.39	e : 0.20	c : 0.13	b : 0.06	g : 0.06	d : 0.06	f : 0.06	
4 : 0.39	e : 0.20	c : 0.13	] : 0.06	g : 0.06	2 : 0.06	f : 0.06	
4 : 0.39	e : 0.13	f : 0.13	] : 0.13	g : 0.06	2 : 0.06	c : 0.06	
4 : 0.33	e : 0.13	c : 0.13	g : 0.13	f : 0.06	= : 0.06	a : 0.06	] : 0.06	
c : 0.39	] : 0.13	= : 0.13	4 : 0.13	f : 0.06	2 : 0.06	g : 0.06	
c : 0.39	a : 0.13	= : 0.13	4 : 0.13	f : 0.06	2 : 0.06	g : 0.06	
c : 0.26	2 : 0.13	= : 0.13	4 : 0.13	8 : 0.06	5 : 0.06	f : 0.06	i : 0.06	g : 0.06	
2 : 0.39	= : 0.13	8 : 0.06	5 : 0.06	f : 0.06	i : 0.06	4 : 0.06	d : 0.06	g : 0.06	

#score	278.27697755990675
#seq	15
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_UTR_m1_run1.txt

#BEAR
!!ccc"""ddddmmmmdddd]ccc22d	chr6:43752768-43753032(+)$1	264	47	74	11.1888
#ffffffddddnnnnndddd]ffffff	chrX:132669918-132670156(-)$1	238	134	161	12.6503
ggggg[eeeeemmmmeeeee]gggggg	chr3:186794103-186794344(+)$1	241	109	136	9.5298
[==========nnnnn==========2	chr3:33038273-33038540(-)$1	267	68	95	12.4959
[ffffff[cccmmmmcccffffffccc	chr17:41150663-41150890(+)$1	227	176	203	9.3027
####gggggggnnnnnggggggg4444	chr9:33112319-33112585(-)$1	266	209	236	11.4398
#ffffffddddnnnnndddd]ffffff	chrX:132669837-132670063(-)$1	226	41	68	12.6503
[dddd[ddddoooooodddd333dddd	chr2:20192610-20192904(-)$1	294	37	64	10.3901
#ddddffffffnnnnnffffff333dd	chr6:26031727-26031957(-)$1	230	156	183	10.2471
ddd!!ccc[ddddllldddd]ccc]dd	chr14:21731679-21731902(-)$1	223	45	72	10.4983
!!bb[cccddddmmmmdddd]ccc]bb	chr12:123997900-123998178(-)$1	278	110	137	10.8526
[===========lll===========]	chr11:125472097-125472411(+)$1	314	237	264	11.8814
gggggg[ccc[allla]ccc]gggggg	chr12:123997696-123998056(-)$1	360	224	251	11.3314

#otherMatches

#Seq PSSM
CACUCAGAUCCUGACAGGGAAGAGGAG	chr6:43752768-43753032(+)$1	264	47	74	11.1888
AGAGGACUAACCAUGUGUUAUGUUUUC	chrX:132669918-132670156(-)$1	238	134	161	12.6503
UUUCCCUCUCCAUGuggagauggaagg	chr3:186794103-186794344(+)$1	241	109	136	9.5298
GCCACAUUUCACUGAUUGGAAUGUGGA	chr3:33038273-33038540(-)$1	267	68	95	12.4959
AUCGUGAAGGUAUCAGCCUCGCGGGAC	chr17:41150663-41150890(+)$1	227	176	203	9.3027
AGCCUCUGCACCUACUGUGCAGAACUC	chr9:33112319-33112585(-)$1	266	209	236	11.4398
AGAGGACUAACCAUGUGUUAUGUUUUC	chrX:132669837-132670063(-)$1	226	41	68	12.6503
CUCCAAUUUCUCACCUGAAAAUGUGGA	chr2:20192610-20192904(-)$1	294	37	64	10.3901
GCUGUGAUAAUUUUUUGUUGUCUUAAC	chr6:26031727-26031957(-)$1	230	156	183	10.2471
GCAACUUGGUGUGCACUACAGCAAAUG	chr14:21731679-21731902(-)$1	223	45	72	10.4983
CAGGCGCCAGGCUUCUGCCUCGGUCUC	chr12:123997900-123998178(-)$1	278	110	137	10.8526
GUGuuuuuuuuuuuaaaaaaaaaaCAG	chr11:125472097-125472411(+)$1	314	237	264	11.8814
GGAGUUUGUGGCUUUGGCACUGACUUC	chr12:123997696-123998056(-)$1	360	224	251	11.3314

#DB
..(((...((((....)))).)))..)	chr6:43752768-43753032(+)$1	1	47	74	11.1888
.((((((((((.....)))).))))))	chrX:132669918-132670156(-)$1	1	134	161	12.6503
(((((.(((((....))))).))))))	chr3:186794103-186794344(+)$1	1	109	136	9.5298
.((((((((((.....)))))))))).	chr3:33038273-33038540(-)$1	1	68	95	12.4959
.((((((.(((....))))))))))))	chr17:41150663-41150890(+)$1	1	176	203	9.3027
....(((((((.....)))))))....	chr9:33112319-33112585(-)$1	1	209	236	11.4398
.((((((((((.....)))).))))))	chrX:132669837-132670063(-)$1	1	41	68	12.6503
.((((.((((......))))...))))	chr2:20192610-20192904(-)$1	1	37	64	10.3901
.((((((((((.....))))))...))	chr6:26031727-26031957(-)$1	1	156	183	10.2471
(((..(((.((((...)))).))).))	chr14:21731679-21731902(-)$1	1	45	72	10.4983
..((.(((((((....)))).))).))	chr12:123997900-123998178(-)$1	1	110	137	10.8526
.(((((((((((...))))))))))).	chr11:125472097-125472411(+)$1	1	237	264	11.8814
((((((.(((.(...).))).))))))	chr12:123997696-123998056(-)$1	1	224	251	11.3314

#PSSM
# : 0.30	[ : 0.30	! : 0.15	g : 0.15	d : 0.07	
f : 0.23	d : 0.23	! : 0.15	g : 0.15	= : 0.15	# : 0.07	
f : 0.23	d : 0.23	g : 0.15	= : 0.15	c : 0.07	# : 0.07	b : 0.07	
f : 0.23	g : 0.15	= : 0.15	d : 0.15	c : 0.07	# : 0.07	! : 0.07	b : 0.07	
f : 0.23	g : 0.23	= : 0.15	d : 0.15	c : 0.07	! : 0.07	[ : 0.07	
f : 0.30	[ : 0.15	= : 0.15	g : 0.15	c : 0.15	" : 0.07	
f : 0.30	= : 0.15	c : 0.15	" : 0.07	e : 0.07	g : 0.07	d : 0.07	[ : 0.07	
d : 0.23	c : 0.23	= : 0.15	" : 0.07	e : 0.07	[ : 0.07	g : 0.07	f : 0.07	
d : 0.38	= : 0.15	c : 0.15	e : 0.07	g : 0.07	f : 0.07	[ : 0.07	
d : 0.46	= : 0.15	c : 0.15	e : 0.07	g : 0.07	f : 0.07	
d : 0.38	= : 0.15	e : 0.07	c : 0.07	g : 0.07	o : 0.07	f : 0.07	[ : 0.07	
n : 0.38	d : 0.23	m : 0.15	o : 0.07	= : 0.07	a : 0.07	
n : 0.38	m : 0.30	l : 0.15	o : 0.07	d : 0.07	
n : 0.38	m : 0.30	l : 0.23	o : 0.07	
n : 0.38	m : 0.30	l : 0.23	o : 0.07	
n : 0.38	m : 0.15	e : 0.07	c : 0.07	o : 0.07	l : 0.07	= : 0.07	a : 0.07	
d : 0.46	= : 0.15	e : 0.07	c : 0.07	g : 0.07	f : 0.07	] : 0.07	
d : 0.46	= : 0.15	c : 0.15	e : 0.07	g : 0.07	f : 0.07	
d : 0.46	= : 0.15	f : 0.15	e : 0.07	g : 0.07	c : 0.07	
d : 0.46	= : 0.15	f : 0.15	e : 0.07	g : 0.07	c : 0.07	
] : 0.53	= : 0.15	f : 0.15	g : 0.07	3 : 0.07	
f : 0.30	c : 0.23	g : 0.23	= : 0.15	3 : 0.07	
c : 0.23	f : 0.23	g : 0.23	= : 0.15	3 : 0.15	
c : 0.23	f : 0.23	g : 0.15	= : 0.15	4 : 0.07	d : 0.07	3 : 0.07	
f : 0.15	g : 0.15	= : 0.15	] : 0.15	2 : 0.07	c : 0.07	4 : 0.07	d : 0.07	3 : 0.07	
d : 0.23	f : 0.15	g : 0.15	= : 0.15	2 : 0.07	c : 0.07	4 : 0.07	b : 0.07	
d : 0.30	f : 0.15	g : 0.15	2 : 0.07	c : 0.07	4 : 0.07	b : 0.07	] : 0.07	

#score	144.4591002137232
#seq	13
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_CDS_m3_run1.txt

#BEAR
c]bb]bb666666a]dddd5	chr7:104752680-104752944(-)$1	264	151	171	12.3421
ggggggg88888888eeeee	chr21:46281077-46281311(-)$1	234	98	118	12.2505
333dddd666666hhhhhhh	chr12:72255091-72255351(+)$1	260	86	106	12.0858
iiiii]a666666hhhhhhh	chr18:2656154-2656423(+)$1	269	72	92	12.7140
eeee]bb666666a]ccc]c	chr7:104752927-104753160(-)$1	233	177	197	13.7330
nffffff55555========	chr17:29632117-29632359(+)$1	242	46	66	12.0891
22eeeee666666ddddddd	chr17:29623081-29623317(+)$1	236	137	157	11.8403
ddd22bb7777777hhhhhh	chr11:120207732-120208063(+)$1	331	209	229	12.2543
nffffff88888888eeeee	chr21:46281537-46281788(-)$1	251	145	165	12.9875
eeee]bb666666a]ccc]c	chr7:104752960-104753191(-)$1	231	208	228	13.7330
]ffffff666666=======	chr20:30947459-30947681(+)$1	222	74	94	14.3677
c]eeeee666666ggggggg	chr17:29632280-29632538(+)$1	258	142	162	13.6588
5ffffff666666a]eeeee	chr3:99567019-99567379(+)$1	360	74	94	13.5402
ee]a]bb666666ggggggg	chr15:28508184-28508421(-)$1	237	109	129	13.3575
nffffff55555========	chr17:29632043-29632288(+)$1	245	120	140	12.0891
c]bb]bb666666a]dddd5	chr7:104752577-104752880(-)$1	303	87	107	12.3421
hhhhh]a7777777hhhhhh	chr15:28508123-28508384(-)$1	261	212	232	12.0928
lffffff7777777ccc]ee	chr17:43009320-43009525(-)$1	205	155	175	14.4018
lffffff666666ccc22dd	chr17:6829459-6829708(-)$1	249	110	130	13.3411
c]eeeee666666ffffff:	chr17:29632338-29632613(+)$1	275	84	104	11.2835
0ffffff7777777hhhhhh	chr16:2028578-2028786(+)$1	208	156	176	13.7388
nffffff55555========	chr17:29632020-29632243(+)$1	223	143	163	12.0891
lffffff7777777ccc]ee	chr17:43009326-43009531(-)$1	205	161	181	14.4018
c]eeeee666666ggggggg	chr17:29632159-29632448(+)$1	289	263	283	13.6588

#otherMatches

#Seq PSSM
UGUUGCUGAAGAUUGUCCUG	chr7:104752680-104752944(-)$1	264	151	171	12.3421
UGCUUGCUUAAUGUUGGUCU	chr21:46281077-46281311(-)$1	234	98	118	12.2505
uuuucagguuuuugguuucu	chr12:72255091-72255351(+)$1	260	86	106	12.0858
GGACUACGCGGGAUUUCGCG	chr18:2656154-2656423(+)$1	269	72	92	12.7140
UGGUGCCAGGAAGUGCUUGA	chr7:104752927-104753160(-)$1	233	177	197	13.7330
AUCUGGACAGAUGAUGAUUG	chr17:29632117-29632359(+)$1	242	46	66	12.0891
CUGCCUGAACAGUCCACAUG	chr17:29623081-29623317(+)$1	236	137	157	11.8403
CAAGGGCCCCAAUGAGUGGC	chr11:120207732-120208063(+)$1	331	209	229	12.2543
GGUGAGGAGGAGGGGGUGGA	chr21:46281537-46281788(-)$1	251	145	165	12.9875
UGGUGCCAGGAAGUGCUUGA	chr7:104752960-104753191(-)$1	231	208	228	13.7330
CCGUCUCGUUCAACCGAUGG	chr20:30947459-30947681(+)$1	222	74	94	14.3677
GUCCAGAAAAAGUGUCGCUG	chr17:29632280-29632538(+)$1	258	142	162	13.6588
UGGACUGGAUGAGGGUGAGC	chr3:99567019-99567379(+)$1	360	74	94	13.5402
AAGUGUGGUCUUGGGGAGAU	chr15:28508184-28508421(-)$1	237	109	129	13.3575
AUCUGGACAGAUGAUGAUUG	chr17:29632043-29632288(+)$1	245	120	140	12.0891
UGUUGCUGAAGAUUGUCCUG	chr7:104752577-104752880(-)$1	303	87	107	12.3421
UUGACGAAAGAUGGCCAAGU	chr15:28508123-28508384(-)$1	261	212	232	12.0928
AUAUUGGAAAAAUUGCCUCU	chr17:43009320-43009525(-)$1	205	155	175	14.4018
agucucacucuauggcccaa	chr17:6829459-6829708(-)$1	249	110	130	13.3411
GUCCAGAAAAAGUGUCGCUG	chr17:29632338-29632613(+)$1	275	84	104	11.2835
AAGGCCGCUCUCCUGGCCGG	chr16:2028578-2028786(+)$1	208	156	176	13.7388
AUCUGGACAGAUGAUGAUUG	chr17:29632020-29632243(+)$1	223	143	163	12.0891
AUAUUGGAAAAAUUGCCUCU	chr17:43009326-43009531(-)$1	205	161	181	14.4018
GUCCAGAAAAAGUGUCGCUG	chr17:29632159-29632448(+)$1	289	263	283	13.6588

#DB
).)).))......).)))).	chr7:104752680-104752944(-)$1	1	151	171	12.3421
)))))))........)))))	chr21:46281077-46281311(-)$1	1	98	118	12.2505
...))))......)))))))	chr12:72255091-72255351(+)$1	1	86	106	12.0858
))))).)......)))))))	chr18:2656154-2656423(+)$1	1	72	92	12.7140
)))).))......).))).)	chr7:104752927-104753160(-)$1	1	177	197	13.7330
.)))))).....))))))))	chr17:29632117-29632359(+)$1	1	46	66	12.0891
..)))))......))))(((	chr17:29623081-29623317(+)$1	1	137	157	11.8403
)))..)).......))))))	chr11:120207732-120208063(+)$1	1	209	229	12.2543
.))))))........)))))	chr21:46281537-46281788(-)$1	1	145	165	12.9875
)))).))......).))).)	chr7:104752960-104753191(-)$1	1	208	228	13.7330
.))))))......)))))))	chr20:30947459-30947681(+)$1	1	74	94	14.3677
).)))))......)))))))	chr17:29632280-29632538(+)$1	1	142	162	13.6588
.))))))......).)))))	chr3:99567019-99567379(+)$1	1	74	94	13.5402
)).).))......)))))))	chr15:28508184-28508421(-)$1	1	109	129	13.3575
.)))))).....))))))))	chr17:29632043-29632288(+)$1	1	120	140	12.0891
).)).))......).)))).	chr7:104752577-104752880(-)$1	1	87	107	12.3421
))))).).......))))))	chr15:28508123-28508384(-)$1	1	212	232	12.0928
.)))))).......))).))	chr17:43009320-43009525(-)$1	1	155	175	14.4018
.))))))......)))..))	chr17:6829459-6829708(-)$1	1	110	130	13.3411
).)))))......)))))).	chr17:29632338-29632613(+)$1	1	84	104	11.2835
.)))))).......))))))	chr16:2028578-2028786(+)$1	1	156	176	13.7388
.)))))).....))))))))	chr17:29632020-29632243(+)$1	1	143	163	12.0891
.)))))).......))).))	chr17:43009326-43009531(-)$1	1	161	181	14.4018
).)))))......)))))))	chr17:29632159-29632448(+)$1	1	263	283	13.6588

#PSSM
c : 0.20	n : 0.16	e : 0.12	l : 0.12	g : 0.04	3 : 0.04	i : 0.04	2 : 0.04	d : 0.04	] : 0.04	5 : 0.04	h : 0.04	0 : 0.04	
f : 0.41	] : 0.20	e : 0.12	g : 0.04	3 : 0.04	i : 0.04	2 : 0.04	d : 0.04	h : 0.04	
f : 0.41	e : 0.24	b : 0.08	g : 0.04	3 : 0.04	i : 0.04	d : 0.04	] : 0.04	h : 0.04	
f : 0.41	e : 0.24	b : 0.08	g : 0.04	d : 0.04	i : 0.04	2 : 0.04	a : 0.04	h : 0.04	
f : 0.41	] : 0.20	e : 0.16	g : 0.04	d : 0.04	i : 0.04	2 : 0.04	h : 0.04	
f : 0.41	b : 0.24	e : 0.16	] : 0.08	g : 0.04	d : 0.04	
f : 0.41	b : 0.24	e : 0.16	a : 0.08	g : 0.04	d : 0.04	
6 : 0.58	7 : 0.20	5 : 0.12	8 : 0.08	
6 : 0.58	7 : 0.20	5 : 0.12	8 : 0.08	
6 : 0.58	7 : 0.20	5 : 0.12	8 : 0.08	
6 : 0.58	7 : 0.20	5 : 0.12	8 : 0.08	
6 : 0.58	7 : 0.20	5 : 0.12	8 : 0.08	
6 : 0.58	7 : 0.20	= : 0.12	8 : 0.08	
a : 0.20	7 : 0.20	= : 0.16	g : 0.12	8 : 0.08	h : 0.08	d : 0.04	c : 0.04	f : 0.04	
] : 0.20	h : 0.20	= : 0.16	g : 0.12	c : 0.12	8 : 0.08	d : 0.04	f : 0.04	
h : 0.20	c : 0.20	= : 0.16	d : 0.12	e : 0.12	g : 0.12	f : 0.04	
h : 0.20	c : 0.16	= : 0.16	d : 0.12	e : 0.12	g : 0.12	2 : 0.04	f : 0.04	
h : 0.20	= : 0.16	d : 0.12	e : 0.12	g : 0.12	c : 0.08	] : 0.08	2 : 0.04	f : 0.04	
e : 0.20	h : 0.20	d : 0.16	= : 0.16	g : 0.12	] : 0.08	f : 0.04	
e : 0.20	h : 0.20	= : 0.16	g : 0.12	5 : 0.08	c : 0.08	d : 0.08	: : 0.04	

#score	310.3941595051083
#seq	24
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_CDS_m3_run2.txt

#BEAR
ffffftttttttttttffff	chr8:17422546-17422825(+)$1	279	245	265	21.8572
eeeeettttttttttteeee	chr7:139281484-139281753(-)$1	269	232	252	22.5548
d!!bbvvvvvvvvvvvvvbb	chr16:3823660-3823926(-)$1	266	216	236	19.7050
eeeeettttttttttteeee	chr16:56973991-56974254(+)$1	263	236	256	22.5548
:ddddtttttttttttdddd	chr17:53478729-53478957(-)$1	228	142	162	22.0061
EEccctttttttttttccc:	chr4:187541793-187542032(-)$1	239	218	238	19.7953
eeewwwwwwwwwwwwwweee	chr12:9231739-9231941(-)$1	202	125	145	19.7799
Fddddtttttttttttdddd	chr10:102120483-102120727(+)$1	244	221	241	22.4439
eeeeettttttttttteeee	chr15:66792530-66792732(-)$1	202	31	51	22.5548
fffffuuuuuuuuuuuufff	chr2:21225098-21225304(-)$1	206	41	61	21.2583
Fcccvvvvvvvvvvvvvccc	chr7:104750892-104751148(+)$1	256	215	235	21.1812
b[ccctttttttttttccc]	chr2:128753828-128754086(-)$1	258	37	57	22.3084
&ddddtttttttttttdddd	chr12:9248034-9248242(-)$1	208	46	66	22.1878
eeeeevvvvvvvvvvvvvee	chr8:71495338-71495596(-)$1	258	143	163	21.1635
:ddddtttttttttttdddd	chr1:42647486-42647759(-)$1	273	6	26	22.0061
"""bbtttttttttttbb33	chr2:161135034-161135269(-)$1	235	145	165	21.0160
+ddddtttttttttttdddd	chr20:49510720-49510994(-)$1	274	194	214	22.2292
yyyyyyyyyyyyyyyyffff	chr16:23080029-23080296(-)$1	267	167	187	18.4358
eeeeettttttttttteeee	chr3:172114859-172115111(+)$1	252	171	191	22.5548
ffwwwwwwwwwwwwwwffff	chr5:55247725-55247994(-)$1	269	109	129	18.8432
[ddddtttttttttttdddd	chr22:42264519-42264789(+)$1	270	52	72	22.6855
eeeeuuuuuuuuuuuueeee	chr16:14980616-14980820(+)$1	204	165	185	21.8362
ffffftttttttttttffff	chr2:136466920-136467207(+)$1	287	261	281	21.8572
!ddddvvvvvvvvvvvvvdd	chr7:139257685-139257972(-)$1	287	163	183	21.2942
eeewwwwwwwwwwwwwweee	chr4:119738388-119738661(-)$1	273	173	193	19.7799
ffffftttttttttttffff	chr6:7571974-7572210(+)$1	236	41	61	21.8572
b[bbuuuuuuuuuuuubb]b	chr16:74497152-74497367(-)$1	215	30	50	20.3188
yyyyyyyyyyyyyyyyeeee	chr7:77256091-77256341(+)$1	250	174	194	18.7467
ggggauuuuuuuuuuuua]g	chr12:7045869-7046126(+)$1	257	204	224	21.5104
:dddduuuuuuuuuuuuddd	chr3:47912269-47912537(-)$1	268	154	174	21.3551
eeeeettttttttttteeee	chr17:64225333-64225546(-)$1	213	167	187	22.5548
b[bbuuuuuuuuuuuubb]b	chr7:139281386-139281647(-)$1	261	159	179	20.3188
ffffftttttttttttffff	chr20:35860672-35860894(+)$1	222	63	83	21.8572
[ddddtttttttttttdddd	chr4:187549543-187549767(-)$1	224	62	82	22.6855
'ddddtttttttttttdddd	chr14:94849339-94849558(-)$1	219	93	113	22.2170
:cccvvvvvvvvvvvvvccc	chr2:159477689-159477984(+)$1	295	136	156	20.7434
:ddddwwwwwwwwwwwwwwd	chr4:187541832-187542063(-)$1	231	131	151	18.5906
eeewwwwwwwwwwwwwweee	chr6:16327591-16327892(-)$1	301	124	144	19.7799
eeeeuuuuuuuuuuuueeee	chr3:98518203-98518490(-)$1	287	83	103	21.8362
eeeeettttttttttteeee	chr2:21229881-21230100(-)$1	219	140	160	22.5548
fffffuuuuuuuuuuuufff	chr12:9256864-9257086(-)$1	222	93	113	21.2583
eeeeettttttttttteeee	chr2:21229900-21230126(-)$1	226	166	186	22.5548
ffwwwwwwwwwwwwwwffff	chr3:52558499-52558779(-)$1	280	173	193	18.8432
eeeeettttttttttteeee	chr2:220089699-220089953(-)$1	254	88	108	22.5548
ffcccuuuuuuuuuuuuccc	chr20:33345185-33345539(-)$1	354	66	86	21.7246
""ccctttttttttttccc3	chr4:71068772-71069012(+)$1	240	40	60	22.2317
fffffvvvvvvvvvvvvvff	chr1:8416179-8416406(-)$1	227	197	217	20.5900
ffffftttttttttttffff	chr10:7785008-7785216(+)$1	208	105	125	21.8572
cddddtttttttttttdddd	chr1:169509893-169510141(-)$1	248	196	216	22.6037
ff[bbtttttttttttbb]f	chr2:21225279-21225502(-)$1	223	91	111	21.3203
:dddduuuuuuuuuuuuddd	chr16:3777717-3778108(-)$1	391	37	57	21.3551
gggggtttttttttttgggg	chr5:32415072-32415390(-)$1	318	14	34	21.9000
eeeeevvvvvvvvvvvvvee	chr5:149922319-149922582(+)$1	263	97	117	21.1635
[ddddtttttttttttdddd	chrX:30872671-30872900(-)$1	229	182	202	22.6855
:ddddtttttttttttdddd	chr4:187538761-187538969(-)$1	208	106	126	22.0061
cddddtttttttttttdddd	chr1:169509865-169510090(-)$1	225	145	165	22.6037
"bbvvvvvvvvvvvvvbb33	chr3:98530210-98530495(-)$1	285	167	187	19.7613
yyyyyyyyyyyyyyyybbdd	chr19:6712169-6712379(-)$1	210	73	93	18.3015
gggggtttttttttttgggg	chr7:103131052-103131275(-)$1	223	168	188	21.9000
:dddduuuuuuuuuuuuddd	chr4:187629110-187629332(-)$1	222	99	119	21.3551
hhhhhttttttttttthhhh	chr2:159481691-159481945(+)$1	254	102	122	19.9912
::ccctttttttttttccc:	chr7:104752601-104752844(+)$1	243	121	141	19.8612
cddddtttttttttttdddd	chr16:68225165-68225409(+)$1	244	192	212	22.6037
ccwwwwwwwwwwwwwwcccf	chr11:59421372-59421643(-)$1	271	80	100	19.0805
bcccuuuuuuuuuuuuccc]	chr10:81070579-81070826(+)$1	247	83	103	21.5510
[ddddtttttttttttdddd	chr7:103290644-103290892(-)$1	248	63	83	22.6855
Fcccvvvvvvvvvvvvvccc	chr2:69741715-69741982(-)$1	267	67	87	21.1812
fffffvvvvvvvvvvvvvff	chr10:7773788-7774016(+)$1	228	196	216	20.5900

#otherMatches

#Seq PSSM
UCUGGACAGCAUCUCCUCAG	chr8:17422546-17422825(+)$1	279	245	265	21.8572
GUCAUCACCAUCAGCAGUGA	chr7:139281484-139281753(-)$1	269	232	252	22.5548
AUUCUUGUGUUAAGUUUUGG	chr16:3823660-3823926(-)$1	266	216	236	19.7050
guuucuuguuuuuuuugaga	chr16:56973991-56974254(+)$1	263	236	256	22.5548
CAGAAUUUUAGUUAUUUUCU	chr17:53478729-53478957(-)$1	228	142	162	22.0061
CACCUAAAGUUUACCCAGGA	chr4:187541793-187542032(-)$1	239	218	238	19.7953
gcuucuuuuugugugccagc	chr12:9231739-9231941(-)$1	202	125	145	19.7799
AGGUUCCUUUUUCAAAAACC	chr10:102120483-102120727(+)$1	244	221	241	22.4439
AAGAUGAUUAAUACAGAUCU	chr15:66792530-66792732(-)$1	202	31	51	22.5548
UUUUUAAAUUGUUGAAAGAA	chr2:21225098-21225304(-)$1	206	41	61	21.2583
AGCCUUUAUAAAAAGUUGGU	chr7:104750892-104751148(+)$1	256	215	235	21.1812
GCAGAUCACGCACACUUCUC	chr2:128753828-128754086(-)$1	258	37	57	22.3084
AUGGAAUCACAUAUACUCCA	chr12:9248034-9248242(-)$1	208	46	66	22.1878
GCUGUGAAGAAGAAACCAAC	chr8:71495338-71495596(-)$1	258	143	163	21.1635
UCCAUUUGUUUUAUUUGUGG	chr1:42647486-42647759(-)$1	273	6	26	22.0061
CCCGCAUCAAUGAUCAGCCC	chr2:161135034-161135269(-)$1	235	145	165	21.0160
GGCCUUAAACCUAAGCAGGC	chr20:49510720-49510994(-)$1	274	194	214	22.2292
AUCCCCGAAAUCUCAGGACU	chr16:23080029-23080296(-)$1	267	167	187	18.4358
GUGUCGUCGCUGUUUAGACA	chr3:172114859-172115111(+)$1	252	171	191	22.5548
CUGUUCGGACAAAAAAAGUA	chr5:55247725-55247994(-)$1	269	109	129	18.8432
UGCAUUCCUCAUCUCUGUGC	chr22:42264519-42264789(+)$1	270	52	72	22.6855
AGGAAGCACAGUUCUCUCCU	chr16:14980616-14980820(+)$1	204	165	185	21.8362
ACAAAAAGCUUCUCAAUUUG	chr2:136466920-136467207(+)$1	287	261	281	21.8572
CCUCGCCCACCAUCCACCCG	chr7:139257685-139257972(-)$1	287	163	183	21.2942
GGUCCUAUAUCCACUUCAUC	chr4:119738388-119738661(-)$1	273	173	193	19.7799
CCUAGCACCUUGAUACCUAG	chr6:7571974-7572210(+)$1	236	41	61	21.8572
GCUUGAAGCAAAAUAAAAAC	chr16:74497152-74497367(-)$1	215	30	50	20.3188
GAACAGAUAGAUAAAAAAUU	chr7:77256091-77256341(+)$1	250	174	194	18.7467
CCUGCCCCCACCUCACAGCC	chr12:7045869-7046126(+)$1	257	204	224	21.5104
ACUUCUGCUCCUGAUCUGAA	chr3:47912269-47912537(-)$1	268	154	174	21.3551
UGUCAGGGAUCAAUAAUGAU	chr17:64225333-64225546(-)$1	213	167	187	22.5548
GAGGAACAGAAACACGCCCC	chr7:139281386-139281647(-)$1	261	159	179	20.3188
UGGUGUCCAAUACAUUCACU	chr20:35860672-35860894(+)$1	222	63	83	21.8572
CUCUCUCUAUACUUCUGAGA	chr4:187549543-187549767(-)$1	224	62	82	22.6855
CAUCCCACCAUGAUCAGGAU	chr14:94849339-94849558(-)$1	219	93	113	22.2170
AGCCAGAACGUGAGCAAGGC	chr2:159477689-159477984(+)$1	295	136	156	20.7434
CACUGUCCAAAACACAACUC	chr4:187541832-187542063(-)$1	231	131	151	18.5906
CCGCACCGCCUCUCCUCCGG	chr6:16327591-16327892(-)$1	301	124	144	19.7799
GGAACUUACAAUACACUUCU	chr3:98518203-98518490(-)$1	287	83	103	21.8362
GUCUCCAUUCACCAUAGAGA	chr2:21229881-21230100(-)$1	219	140	160	22.5548
CGCCUAGUAGAUGGGAAAGG	chr12:9256864-9257086(-)$1	222	93	113	21.2583
GUCUCCAUUCACCAUAGAGA	chr2:21229900-21230126(-)$1	226	166	186	22.5548
GGACUUCACCUUCUACCCAC	chr3:52558499-52558779(-)$1	280	173	193	18.8432
CAAGUUCAUCUAUAACAUUU	chr2:220089699-220089953(-)$1	254	88	108	22.5548
AGACCAUCCUUAGCCACGGU	chr20:33345185-33345539(-)$1	354	66	86	21.7246
CAGAAUAUAAUUUAAUUUCA	chr4:71068772-71069012(+)$1	240	40	60	22.2317
GCUUGGACAGCCCCCACACG	chr1:8416179-8416406(-)$1	227	197	217	20.5900
AAUGACCCACAUUUCAUCAU	chr10:7785008-7785216(+)$1	208	105	125	21.8572
UCAGAUAUUCUACCCUUCUG	chr1:169509893-169510141(-)$1	248	196	216	22.6037
GUGCUACGUAAUCUUCAGGA	chr2:21225279-21225502(-)$1	223	91	111	21.3203
AGGCCUCGCAUCUCCCUGGC	chr16:3777717-3778108(-)$1	391	37	57	21.3551
UUCUUUCCAGCUUUUUAAGG	chr5:32415072-32415390(-)$1	318	14	34	21.9000
UGCCCUCUACCUGUUCCUGG	chr5:149922319-149922582(+)$1	263	97	117	21.1635
CAUCUAGUUUAUCCAAAGGU	chrX:30872671-30872900(-)$1	229	182	202	22.6855
AGGUAAAAAAAAUUCAUACC	chr4:187538761-187538969(-)$1	208	106	126	22.0061
UCAGAUAUUCUACCCUUCUG	chr1:169509865-169510090(-)$1	225	145	165	22.6037
UCCAAAAAUAGCCAAAGGUA	chr3:98530210-98530495(-)$1	285	167	187	19.7613
AUCAACACACACCCCAGCCA	chr19:6712169-6712379(-)$1	210	73	93	18.3015
GCAAAUUAAGGUAAACUUUG	chr7:103131052-103131275(-)$1	223	168	188	21.9000
CGUGGGAGAGCAAAUAACCA	chr4:187629110-187629332(-)$1	222	99	119	21.3551
GUCCCCCAAACGCUCAGGGA	chr2:159481691-159481945(+)$1	254	102	122	19.9912
CAGCCAAUACUCAGCAGGCA	chr7:104752601-104752844(+)$1	243	121	141	19.8612
CAGCUUCUCAUCCCUUGGCU	chr16:68225165-68225409(+)$1	244	192	212	22.6037
CUUUUCCGUUUUUCUUAGAU	chr11:59421372-59421643(-)$1	271	80	100	19.0805
cucucuccuccucCACAGAU	chr10:81070579-81070826(+)$1	247	83	103	21.5510
UGGAACCGAAUAACAAUUCC	chr7:103290644-103290892(-)$1	248	63	83	22.6855
CAGGCCCUUAUUCAUCUCCU	chr2:69741715-69741982(-)$1	267	67	87	21.1812
AUCUACUAACUGACCCCCUA	chr10:7773788-7774016(+)$1	228	196	216	20.5900

#DB
(((((...........))))	chr8:17422546-17422825(+)$1	1	245	265	21.8572
(((((...........))))	chr7:139281484-139281753(-)$1	1	232	252	22.5548
(..((.............))	chr16:3823660-3823926(-)$1	1	216	236	19.7050
(((((...........))))	chr16:56973991-56974254(+)$1	1	236	256	22.5548
.((((...........))))	chr17:53478729-53478957(-)$1	1	142	162	22.0061
))(((...........))).	chr4:187541793-187542032(-)$1	1	218	238	19.7953
(((..............)))	chr12:9231739-9231941(-)$1	1	125	145	19.7799
)((((...........))))	chr10:102120483-102120727(+)$1	1	221	241	22.4439
(((((...........))))	chr15:66792530-66792732(-)$1	1	31	51	22.5548
(((((............)))	chr2:21225098-21225304(-)$1	1	41	61	21.2583
)(((.............)))	chr7:104750892-104751148(+)$1	1	215	235	21.1812
(.(((...........))).	chr2:128753828-128754086(-)$1	1	37	57	22.3084
.((((...........))))	chr12:9248034-9248242(-)$1	1	46	66	22.1878
(((((.............))	chr8:71495338-71495596(-)$1	1	143	163	21.1635
.((((...........))))	chr1:42647486-42647759(-)$1	1	6	26	22.0061
...((...........))..	chr2:161135034-161135269(-)$1	1	145	165	21.0160
.((((...........))))	chr20:49510720-49510994(-)$1	1	194	214	22.2292
................))))	chr16:23080029-23080296(-)$1	1	167	187	18.4358
(((((...........))))	chr3:172114859-172115111(+)$1	1	171	191	22.5548
((..............))))	chr5:55247725-55247994(-)$1	1	109	129	18.8432
.((((...........))))	chr22:42264519-42264789(+)$1	1	52	72	22.6855
((((............))))	chr16:14980616-14980820(+)$1	1	165	185	21.8362
(((((...........))))	chr2:136466920-136467207(+)$1	1	261	281	21.8572
.((((.............))	chr7:139257685-139257972(-)$1	1	163	183	21.2942
(((..............)))	chr4:119738388-119738661(-)$1	1	173	193	19.7799
(((((...........))))	chr6:7571974-7572210(+)$1	1	41	61	21.8572
(.((............)).)	chr16:74497152-74497367(-)$1	1	30	50	20.3188
................))))	chr7:77256091-77256341(+)$1	1	174	194	18.7467
(((((............).)	chr12:7045869-7046126(+)$1	1	204	224	21.5104
.((((............)))	chr3:47912269-47912537(-)$1	1	154	174	21.3551
(((((...........))))	chr17:64225333-64225546(-)$1	1	167	187	22.5548
(.((............)).)	chr7:139281386-139281647(-)$1	1	159	179	20.3188
(((((...........))))	chr20:35860672-35860894(+)$1	1	63	83	21.8572
.((((...........))))	chr4:187549543-187549767(-)$1	1	62	82	22.6855
.((((...........))))	chr14:94849339-94849558(-)$1	1	93	113	22.2170
.(((.............)))	chr2:159477689-159477984(+)$1	1	136	156	20.7434
.((((..............)	chr4:187541832-187542063(-)$1	1	131	151	18.5906
(((..............)))	chr6:16327591-16327892(-)$1	1	124	144	19.7799
((((............))))	chr3:98518203-98518490(-)$1	1	83	103	21.8362
(((((...........))))	chr2:21229881-21230100(-)$1	1	140	160	22.5548
(((((............)))	chr12:9256864-9257086(-)$1	1	93	113	21.2583
(((((...........))))	chr2:21229900-21230126(-)$1	1	166	186	22.5548
((..............))))	chr3:52558499-52558779(-)$1	1	173	193	18.8432
(((((...........))))	chr2:220089699-220089953(-)$1	1	88	108	22.5548
))(((............)))	chr20:33345185-33345539(-)$1	1	66	86	21.7246
..(((...........))).	chr4:71068772-71069012(+)$1	1	40	60	22.2317
(((((.............))	chr1:8416179-8416406(-)$1	1	197	217	20.5900
(((((...........))))	chr10:7785008-7785216(+)$1	1	105	125	21.8572
(((((...........))))	chr1:169509893-169510141(-)$1	1	196	216	22.6037
((.((...........)).)	chr2:21225279-21225502(-)$1	1	91	111	21.3203
.((((............)))	chr16:3777717-3778108(-)$1	1	37	57	21.3551
(((((...........))))	chr5:32415072-32415390(-)$1	1	14	34	21.9000
(((((.............))	chr5:149922319-149922582(+)$1	1	97	117	21.1635
.((((...........))))	chrX:30872671-30872900(-)$1	1	182	202	22.6855
.((((...........))))	chr4:187538761-187538969(-)$1	1	106	126	22.0061
(((((...........))))	chr1:169509865-169510090(-)$1	1	145	165	22.6037
.((.............))..	chr3:98530210-98530495(-)$1	1	167	187	19.7613
................))((	chr19:6712169-6712379(-)$1	1	73	93	18.3015
(((((...........))))	chr7:103131052-103131275(-)$1	1	168	188	21.9000
.((((............)))	chr4:187629110-187629332(-)$1	1	99	119	21.3551
(((((...........))))	chr2:159481691-159481945(+)$1	1	102	122	19.9912
..(((...........))).	chr7:104752601-104752844(+)$1	1	121	141	19.8612
)((((...........))))	chr16:68225165-68225409(+)$1	1	192	212	22.6037
((..............))))	chr11:59421372-59421643(-)$1	1	80	100	19.0805
((((............))).	chr10:81070579-81070826(+)$1	1	83	103	21.5510
.((((...........))))	chr7:103290644-103290892(-)$1	1	63	83	22.6855
((((.............)))	chr2:69741715-69741982(-)$1	1	67	87	21.1812
(((((.............))	chr10:7773788-7774016(+)$1	1	196	216	20.5900

#PSSM
e : 0.22	f : 0.19	: : 0.13	b : 0.05	[ : 0.05	c : 0.05	F : 0.04	" : 0.04	y : 0.04	g : 0.04	d : 0.01	E : 0.01	& : 0.01	+ : 0.01	! : 0.01	' : 0.01	h : 0.01	
d : 0.27	e : 0.22	f : 0.19	c : 0.07	[ : 0.04	y : 0.04	g : 0.04	" : 0.02	! : 0.01	E : 0.01	b : 0.01	h : 0.01	: : 0.01	
d : 0.27	e : 0.22	f : 0.13	c : 0.13	y : 0.04	w : 0.04	b : 0.04	g : 0.04	! : 0.01	" : 0.01	[ : 0.01	h : 0.01	
d : 0.27	e : 0.17	f : 0.13	c : 0.13	w : 0.08	b : 0.07	y : 0.04	g : 0.04	v : 0.01	h : 0.01	
d : 0.27	e : 0.14	f : 0.13	w : 0.08	c : 0.07	u : 0.07	v : 0.05	b : 0.04	y : 0.04	g : 0.02	a : 0.01	h : 0.01	
t : 0.52	u : 0.17	v : 0.14	w : 0.10	y : 0.04	
t : 0.52	u : 0.17	v : 0.14	w : 0.10	y : 0.04	
t : 0.52	u : 0.17	v : 0.14	w : 0.10	y : 0.04	
t : 0.52	u : 0.17	v : 0.14	w : 0.10	y : 0.04	
t : 0.52	u : 0.17	v : 0.14	w : 0.10	y : 0.04	
t : 0.52	u : 0.17	v : 0.14	w : 0.10	y : 0.04	
t : 0.52	u : 0.17	v : 0.14	w : 0.10	y : 0.04	
t : 0.52	u : 0.17	v : 0.14	w : 0.10	y : 0.04	
t : 0.52	u : 0.17	v : 0.14	w : 0.10	y : 0.04	
t : 0.52	u : 0.17	v : 0.14	w : 0.10	y : 0.04	
t : 0.52	u : 0.17	v : 0.14	w : 0.10	y : 0.04	
d : 0.20	e : 0.16	v : 0.13	f : 0.11	u : 0.10	c : 0.08	b : 0.08	w : 0.05	g : 0.02	h : 0.01	
d : 0.25	e : 0.20	f : 0.14	c : 0.14	v : 0.08	b : 0.08	g : 0.02	a : 0.01	w : 0.01	h : 0.01	
d : 0.27	e : 0.23	f : 0.17	c : 0.14	] : 0.05	3 : 0.02	g : 0.02	b : 0.01	w : 0.01	h : 0.01	
d : 0.29	e : 0.23	f : 0.20	c : 0.05	b : 0.04	3 : 0.04	g : 0.04	: : 0.02	] : 0.02	h : 0.01	

#score	1446.933389240873
#seq	68
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_CDS_m2_run1.txt

#BEAR
dddd!!eeeeeooooooeeeee>>>	chrX:47058054-47058322(+)$1	268	186	211	10.6746
eee"""eeeeemmmmeeeee333ee	chr17:62498083-62498344(-)$1	261	183	208	15.5105
[bb!!eeeeeooooooeeeee22bb	chr4:3447619-3447877(+)$1	258	4	29	10.9633
dd[bb[eeeeemmmmeeeee]bb]d	chrX:70518206-70518462(+)$1	256	207	232	12.8180
cc"""ccc[bbmmmmbbccc333cc	chr6:56330862-56331132(-)$1	270	152	177	9.5634
"dddd[eeeeemmmmeeeee]dddd	chr6:131996054-131996335(+)$1	281	224	249	13.1601
cc[ccc[ddddmmmmdddd]ccc]c	chr9:133509909-133510158(+)$1	249	11	36	9.6661
bb!!eeeeeooooooeeeee22bbf	chr20:60899504-60899777(-)$1	273	196	221	10.7344
cc####eeeeellleeeee333ccc	chr6:158489524-158489784(+)$1	260	91	116	13.6228
dd!!gggggggmmmmggggggg333	chr19:50916845-50917112(+)$1	267	137	162	9.3956
eeee[a[ddddmmmmdddd]a]eee	chr1:145440480-145440742(+)$1	262	104	129	9.8615
bb####eeeeellleeeeebb]ccc	chr11:64973763-64974056(+)$1	293	215	240	11.3917
[eeeee[eeeeellleeeee22eee	chr21:45739780-45740074(+)$1	294	92	117	10.9755
[dddd!!ddddmmmmdddd4444dd	chr10:135107163-135107420(-)$1	257	106	131	11.2972
cc"""eeeeennnnneeeee333cc	chr9:734608-734857(+)$1	249	202	227	12.4663
eeeee[eeeeemmmmeeeee22eee	chr3:50140352-50140620(+)$1	268	207	232	13.5900
dddd[eeeeeooooooeeeee]ddd	chr3:142745838-142746108(+)$1	270	169	194	11.0278
dddd!!eeeeellleeeee333ddd	chr6:31860566-31860830(-)$1	264	236	261	12.8959
eeee!!eeeeemmmmeeeee333ee	chr2:11760829-11761144(+)$1	315	205	230	15.0913
dddd####cccmmmmccc4444ddd	chr11:61111472-61111735(+)$1	263	190	215	9.8502
ccccc[eeeeemmmmeeeee]ccc2	chr14:24032949-24033244(-)$1	295	126	151	13.6549
[a!!a[eeeeemmmmeeeee]a22a	chr18:690527-690879(-)$1	352	228	253	14.0777
===========mmmm==========	chr15:101825896-101826152(-)$1	256	63	88	9.5443
[bb"""eeeeemmmmeeeee22bbc	chr21:45731798-45732091(+)$1	293	37	62	14.2949
bb[ddddddddmmmmdddd4444dd	chr17:27075378-27075640(+)$1	262	125	150	10.1213
eeeee[eeeeemmmmeeeeeeeeee	chr19:10224211-10224450(+)$1	239	200	225	12.5337
dddd!!eeeeemmmmeeeee22ddd	chr1:31896391-31896670(+)$1	279	11	36	14.4660
a[ccc[ddddammmma]ddddccc]	chr17:27064551-27064801(+)$1	250	173	198	9.3935
eeccc"""cccmmmmccc333ccc4	chr20:34214164-34214417(-)$1	253	139	164	9.4355
eccc!!eeeeemmmmeeeee]ccc4	chr17:4788618-4788878(+)$1	260	139	164	14.3845
cc"""eeeeeooooooeeeee]ccc	chr20:60903371-60903664(-)$1	293	5	30	12.0467
dd!!eeeeeooooooeeeee22ddd	chr22:50689208-50689477(-)$1	269	58	83	11.5476
ddd"""eeeeellleeeee4444dd	chr7:127729386-127729694(+)$1	308	159	184	13.3633
c[ccc[eeeeemmmmeeeee22ccc	chr16:85687707-85687987(+)$1	280	217	242	14.4070
eeee"""ddddmmmmddddeeeee]	chr19:35761193-35761465(+)$1	272	116	141	10.1343
!dddd[eeeeemmmmeeeee66666	chr16:74949777-74950028(-)$1	251	84	109	12.0358
''ccc[eeeeemmmmeeeee]cccg	chr17:56082846-56083115(-)$1	269	117	142	12.5338
bb####eeeeemmmmeeeee4444b	chr2:11777692-11777952(+)$1	260	226	251	14.7590
cc[bb[eeeeemmmmeeeeebb]cc	chr17:80010989-80011241(+)$1	252	129	154	12.7246
cccc[eeeeeooooooeeeee]ccc	chr19:39196541-39196818(+)$1	277	31	56	11.5363
ffff"""ddddmmmmdddd]fffff	chr17:8110099-8110348(-)$1	249	206	231	9.5486
[ccc[eeeeeammmma]eeeee]cc	chr7:100229712-100229961(-)$1	249	43	68	12.1498
[ccc!!eeeeemmmmeeeee333cc	chr16:58577701-58577949(-)$1	248	73	98	15.7825
d[bb!!eeeeellleeeee]bb]dd	chr12:51399354-51399608(-)$1	254	14	39	10.8459
fff"""eeeeemmmmeeeeefffff	chr17:79913309-79913534(-)$1	225	187	212	13.3066
c[ddddeeeeemmmmeeeee333dd	chr20:60747558-60747838(+)$1	280	75	100	14.0906
ddddeeeeeooooooeeeee333dd	chr2:42281928-42282184(+)$1	256	40	65	11.9987
ffff"""eeeeellleeeee333ff	chr2:27427695-27427976(-)$1	281	159	184	12.6257
fffbb[eeeeemmmmeeeee]bb]f	chr22:50354821-50355077(+)$1	256	133	158	12.3507
!bb####ddddmmmmdddd4444bb	chr9:738142-738408(+)$1	266	93	118	11.1068
eccc!!eeeeemmmmeeeee22ccc	chr8:144642602-144642877(+)$1	275	33	58	14.9288
f$$$$$eeeeemmmmeeeee]ffff	chr9:135798753-135798996(-)$1	243	53	78	12.9146
ffffffeeeeemmmmeeeee4444f	chr11:65318836-65319095(-)$1	259	213	238	13.2701
h$$$$$eeeeemmmmeeeee4444h	chr9:131094983-131095235(+)$1	252	208	233	13.9549

#otherMatches

#Seq PSSM
GGGCCUGAUCCAAAGCCGGGUUCUA	chrX:47058054-47058322(+)$1	268	186	211	10.6746
CUGAUUGCUACAGAUGUGGCCUCCA	chr17:62498083-62498344(-)$1	261	183	208	15.5105
gugaGUGGGCGCCAGGGCCUGAGCA	chr4:3447619-3447877(+)$1	258	4	29	10.9633
AACUAUGUAGCUUCUGCUGCCUACU	chrX:70518206-70518462(+)$1	256	207	232	12.8180
AGCAACUGCGACUGGUCCGGAUCCU	chr6:56330862-56331132(-)$1	270	152	177	9.5634
AGAAGUGGCUAUAAAUGGCUCCUUU	chr6:131996054-131996335(+)$1	281	224	249	13.1601
CAGGCAGGGCUGCGGAGCCGUGUGU	chr9:133509909-133510158(+)$1	249	11	36	9.6661
CAAAGGUCUCUUCCUGGGCCGAUGU	chr20:60899504-60899777(-)$1	273	196	221	10.7344
CAUGAACUCGUAAUGCGGGACUUGG	chr6:158489524-158489784(+)$1	260	91	116	13.6228
UCCCCACCGCCCGCAGGUGGUGUAU	chr19:50916845-50917112(+)$1	267	137	162	9.3956
UGUUUCUCCAGACCUCUGGUGUAAU	chr1:145440480-145440742(+)$1	262	104	129	9.8615
GCCAAUGCGUCUCGGGCGCGCUCAG	chr11:64973763-64974056(+)$1	293	215	240	11.3917
UGUGACCAGCCUCCUGGGCUCUGUC	chr21:45739780-45740074(+)$1	294	92	117	10.9755
GAGUGGGGGCUGCAGAGCCACAGCG	chr10:135107163-135107420(-)$1	257	106	131	11.2972
CAAAGCUUUGACCAGCAAAGAUAUG	chr9:734608-734857(+)$1	249	202	227	12.4663
CAAUCCCAGACCUAAGUUUGAAGAU	chr3:50140352-50140620(+)$1	268	207	232	13.5900
UACAUCGAAUGAUAGAGUUUGUUGU	chr3:142745838-142746108(+)$1	270	169	194	11.0278
CAUCCCCCACCCCCGGUGGCUUGAU	chr6:31860566-31860830(-)$1	264	236	261	12.8959
GGAAGACAGGUGCCUACCUGCAGUU	chr2:11760829-11761144(+)$1	315	205	230	15.0913
GGGCCUGGAGGAACACCUGAAUGCC	chr11:61111472-61111735(+)$1	263	190	215	9.8502
CAUGGACCAGGAUGACCUGGGCUAC	chr14:24032949-24033244(-)$1	295	126	151	13.6549
ACGGCGCUGUGUUUUCACAGAGAAG	chr18:690527-690879(-)$1	352	228	253	14.0777
UUACUUUCAAAAGCUUUUGAAAGUA	chr15:101825896-101826152(-)$1	256	63	88	9.5443
ACCUCAGGUUUCCAGAGACCCCGGG	chr21:45731798-45732091(+)$1	293	37	62	14.2949
UGCCUCUCUACUUCUGUGGCCCCAG	chr17:27075378-27075640(+)$1	262	125	150	10.1213
GGCCGUGGCCAGCAAUGGCCUGGCC	chr19:10224211-10224450(+)$1	239	200	225	12.5337
GUUCAAUGGGCUGGUGUCUGGGGAA	chr1:31896391-31896670(+)$1	279	11	36	14.4660
GGAGCAGGACCACCAGUGUCCGCUG	chr17:27064551-27064801(+)$1	250	173	198	9.3935
CCGUGCUCGCAGAAGUGCCCACACA	chr20:34214164-34214417(-)$1	253	139	164	9.4355
CUCCCUCUGUGUCUUCACAGUGGAU	chr17:4788618-4788878(+)$1	260	139	164	14.3845
GUCAGGAGCUGUCCAAGGCUCAGCA	chr20:60903371-60903664(-)$1	293	5	30	12.0467
CGGCUGCUCUGGGACGAGUAAGUGG	chr22:50689208-50689477(-)$1	269	58	83	11.5476
UGCCCGCACGGACGCCGUGGACAGC	chr7:127729386-127729694(+)$1	308	159	184	13.3633
CAUUGUGGAGCCCCCGCUCCCUCAG	chr16:85687707-85687987(+)$1	280	217	242	14.4070
AGAGAAAGCUAAGGGUAGCCUCUGC	chr19:35761193-35761465(+)$1	272	116	141	10.1343
CUGUUUCAUUUUCAAAAAUGCUUUC	chr16:74949777-74950028(-)$1	251	84	109	12.0358
UUAGAUCUUUCAAUGGAAAGUUCUG	chr17:56082846-56083115(-)$1	269	117	142	12.5338
GCCCGCCCAGCUCCUGCUGGAGAAG	chr2:11777692-11777952(+)$1	260	226	251	14.7590
CGAGGUGCCAGGUGCCUGGCCCAUG	chr17:80010989-80011241(+)$1	252	129	154	12.7246
CCCUUGGGUUUCGUUUGACCCCAGG	chr19:39196541-39196818(+)$1	277	31	56	11.5363
GAGUAUGCCCCCCGCGGGGAGCUCU	chr17:8110099-8110348(-)$1	249	206	231	9.5486
CAGUUGCAAGCAAAGGCCUUGCCAU	chr7:100229712-100229961(-)$1	249	43	68	12.1498
UGAUUGCCAGUAGGAAUUGGAUUGU	chr16:58577701-58577949(-)$1	248	73	98	15.7825
UCCCAAGUAGUUGGACUAUAGGCAC	chr12:51399354-51399608(-)$1	254	14	39	10.8459
GCCGGUGCAGGAGGGCCUGCGGCUG	chr17:79913309-79913534(-)$1	225	187	212	13.3066
UUUGGUUUUGGGAUUCCAAAGUUAC	chr20:60747558-60747838(+)$1	280	75	100	14.0906
CCUGAGGGAUCCGGCUCCCUGGCCA	chr2:42281928-42282184(+)$1	256	40	65	11.9987
GGGUGGUGUCUGUUACAGGCUGGAU	chr2:27427695-27427976(-)$1	281	159	184	12.6257
CGUCUCCGCAGGUGGCUGUGAAGCA	chr22:50354821-50355077(+)$1	256	133	158	12.3507
CAGAAAGUCUAUAAAUAGAAGAACU	chr9:738142-738408(+)$1	266	93	118	11.1068
GCUGCCGGUGCCCCGGCACCCACAG	chr8:144642602-144642877(+)$1	275	33	58	14.9288
GUACAAUGCCGAUCCUGGUGCCAGU	chr9:135798753-135798996(-)$1	243	53	78	12.9146
CCCUACCCCGGUGAGCUGGGCACUG	chr11:65318836-65319095(-)$1	259	213	238	13.2701
CAUUCUUUGGACCGAUCCGACUUGG	chr9:131094983-131095235(+)$1	252	208	233	13.9549

#DB
((((..(((((......)))))...	chrX:47058054-47058322(+)$1	1	186	211	10.6746
(((...(((((....)))))...))	chr17:62498083-62498344(-)$1	1	183	208	15.5105
.((..(((((......)))))..))	chr4:3447619-3447877(+)$1	1	4	29	10.9633
((.((.(((((....))))).)).)	chrX:70518206-70518462(+)$1	1	207	232	12.8180
((...(((.((....)))))...))	chr6:56330862-56331132(-)$1	1	152	177	9.5634
.((((.(((((....))))).))))	chr6:131996054-131996335(+)$1	1	224	249	13.1601
((.(((.((((....)))).))).)	chr9:133509909-133510158(+)$1	1	11	36	9.6661
((..(((((......)))))..)))	chr20:60899504-60899777(-)$1	1	196	221	10.7344
((....(((((...)))))...)))	chr6:158489524-158489784(+)$1	1	91	116	13.6228
((..(((((((....)))))))...	chr19:50916845-50917112(+)$1	1	137	162	9.3956
((((.(.((((....)))).).)))	chr1:145440480-145440742(+)$1	1	104	129	9.8615
((....(((((...))))))).)))	chr11:64973763-64974056(+)$1	1	215	240	11.3917
.(((((.(((((...)))))..)))	chr21:45739780-45740074(+)$1	1	92	117	10.9755
.((((..((((....))))....))	chr10:135107163-135107420(-)$1	1	106	131	11.2972
((...(((((.....)))))...))	chr9:734608-734857(+)$1	1	202	227	12.4663
(((((.(((((....)))))..)))	chr3:50140352-50140620(+)$1	1	207	232	13.5900
((((.(((((......))))).)))	chr3:142745838-142746108(+)$1	1	169	194	11.0278
((((..(((((...)))))...)))	chr6:31860566-31860830(-)$1	1	236	261	12.8959
((((..(((((....)))))...))	chr2:11760829-11761144(+)$1	1	205	230	15.0913
((((....(((....)))....)))	chr11:61111472-61111735(+)$1	1	190	215	9.8502
(((((.(((((....))))).))).	chr14:24032949-24033244(-)$1	1	126	151	13.6549
.(..(.(((((....))))).)..)	chr18:690527-690879(-)$1	1	228	253	14.0777
(((((((((((....))))))))))	chr15:101825896-101826152(-)$1	1	63	88	9.5443
.((...(((((....)))))..)))	chr21:45731798-45732091(+)$1	1	37	62	14.2949
((.((((((((....))))....))	chr17:27075378-27075640(+)$1	1	125	150	10.1213
(((((.(((((....))))))))))	chr19:10224211-10224450(+)$1	1	200	225	12.5337
((((..(((((....)))))..)))	chr1:31896391-31896670(+)$1	1	11	36	14.4660
(.(((.(((((....).))))))).	chr17:27064551-27064801(+)$1	1	173	198	9.3935
(((((...(((....)))...))).	chr20:34214164-34214417(-)$1	1	139	164	9.4355
((((..(((((....))))).))).	chr17:4788618-4788878(+)$1	1	139	164	14.3845
((...(((((......))))).)))	chr20:60903371-60903664(-)$1	1	5	30	12.0467
((..(((((......)))))..)))	chr22:50689208-50689477(-)$1	1	58	83	11.5476
(((...(((((...)))))....))	chr7:127729386-127729694(+)$1	1	159	184	13.3633
(.(((.(((((....)))))..)))	chr16:85687707-85687987(+)$1	1	217	242	14.4070
((((...((((....))))))))).	chr19:35761193-35761465(+)$1	1	116	141	10.1343
.((((.(((((....))))).....	chr16:74949777-74950028(-)$1	1	84	109	12.0358
..(((.(((((....))))).))))	chr17:56082846-56083115(-)$1	1	117	142	12.5338
((....(((((....)))))....)	chr2:11777692-11777952(+)$1	1	226	251	14.7590
((.((.(((((....))))))).))	chr17:80010989-80011241(+)$1	1	129	154	12.7246
)(((.(((((......))))).)))	chr19:39196541-39196818(+)$1	1	31	56	11.5363
((((...((((....)))).)))))	chr17:8110099-8110348(-)$1	1	206	231	9.5486
.(((.((((((....).))))).))	chr7:100229712-100229961(-)$1	1	43	68	12.1498
.(((..(((((....)))))...))	chr16:58577701-58577949(-)$1	1	73	98	15.7825
(.((..(((((...))))).)).))	chr12:51399354-51399608(-)$1	1	14	39	10.8459
(((...(((((....))))))))))	chr17:79913309-79913534(-)$1	1	187	212	13.3066
(.(((((((((....)))))...))	chr20:60747558-60747838(+)$1	1	75	100	14.0906
(((((((((......)))))...))	chr2:42281928-42282184(+)$1	1	40	65	11.9987
((((...(((((...)))))...))	chr2:27427695-27427976(-)$1	1	159	184	12.6257
(((((.(((((....))))).)).)	chr22:50354821-50355077(+)$1	1	133	158	12.3507
.((....((((....))))....))	chr9:738142-738408(+)$1	1	93	118	11.1068
((((..(((((....)))))..)))	chr8:144642602-144642877(+)$1	1	33	58	14.9288
(.....(((((....))))).))))	chr9:135798753-135798996(-)$1	1	53	78	12.9146
(((((((((((....)))))....)	chr11:65318836-65319095(-)$1	1	213	238	13.2701
(.....(((((....)))))....)	chr9:131094983-131095235(+)$1	1	208	233	13.9549

#PSSM
d : 0.20	c : 0.18	e : 0.16	[ : 0.12	f : 0.11	b : 0.07	! : 0.03	" : 0.01	= : 0.01	a : 0.01	' : 0.01	h : 0.01	
d : 0.24	c : 0.22	e : 0.14	b : 0.12	f : 0.09	[ : 0.07	$ : 0.03	a : 0.01	= : 0.01	' : 0.01	
d : 0.20	c : 0.18	e : 0.12	f : 0.09	b : 0.07	[ : 0.07	! : 0.07	" : 0.05	# : 0.05	$ : 0.03	= : 0.01	
d : 0.20	c : 0.20	" : 0.12	e : 0.11	! : 0.09	b : 0.07	# : 0.07	f : 0.05	$ : 0.03	= : 0.01	
" : 0.18	! : 0.16	c : 0.11	e : 0.11	d : 0.09	# : 0.09	[ : 0.07	b : 0.05	$ : 0.03	g : 0.01	a : 0.01	= : 0.01	f : 0.01	
[ : 0.22	e : 0.18	! : 0.16	" : 0.14	# : 0.09	c : 0.03	d : 0.03	$ : 0.03	g : 0.01	a : 0.01	= : 0.01	f : 0.01	
e : 0.72	" : 0.07	[ : 0.05	# : 0.03	d : 0.03	c : 0.01	g : 0.01	! : 0.01	= : 0.01	
e : 0.75	d : 0.14	c : 0.01	g : 0.01	# : 0.01	= : 0.01	" : 0.01	
e : 0.75	d : 0.14	c : 0.03	[ : 0.01	g : 0.01	= : 0.01	
e : 0.70	d : 0.14	o : 0.05	c : 0.03	b : 0.01	g : 0.01	= : 0.01	
e : 0.59	o : 0.12	d : 0.12	c : 0.03	a : 0.03	b : 0.01	g : 0.01	n : 0.01	= : 0.01	
m : 0.70	o : 0.14	l : 0.09	e : 0.03	n : 0.01	
m : 0.70	o : 0.14	l : 0.12	n : 0.01	
m : 0.70	o : 0.14	l : 0.12	n : 0.01	
m : 0.70	o : 0.14	e : 0.09	l : 0.03	n : 0.01	
e : 0.64	d : 0.12	o : 0.09	c : 0.03	a : 0.03	b : 0.01	g : 0.01	= : 0.01	
e : 0.72	d : 0.12	c : 0.03	] : 0.03	o : 0.01	b : 0.01	g : 0.01	= : 0.01	
e : 0.75	d : 0.14	c : 0.05	g : 0.01	= : 0.01	
e : 0.75	d : 0.14	c : 0.01	g : 0.01	4 : 0.01	= : 0.01	3 : 0.01	
e : 0.68	4 : 0.09	] : 0.07	3 : 0.05	c : 0.01	g : 0.01	b : 0.01	= : 0.01	d : 0.01	
3 : 0.20	e : 0.14	] : 0.14	2 : 0.14	4 : 0.14	b : 0.05	f : 0.03	c : 0.01	g : 0.01	a : 0.01	= : 0.01	d : 0.01	6 : 0.01	
3 : 0.18	2 : 0.16	4 : 0.14	c : 0.11	] : 0.09	e : 0.07	b : 0.07	f : 0.05	d : 0.01	g : 0.01	a : 0.01	= : 0.01	6 : 0.01	
c : 0.22	3 : 0.16	4 : 0.12	d : 0.11	e : 0.09	b : 0.07	] : 0.05	f : 0.05	2 : 0.03	> : 0.01	= : 0.01	6 : 0.01	
c : 0.29	d : 0.22	e : 0.12	b : 0.07	f : 0.07	] : 0.05	4 : 0.05	> : 0.01	3 : 0.01	2 : 0.01	= : 0.01	6 : 0.01	
d : 0.24	c : 0.24	f : 0.12	e : 0.11	b : 0.05	] : 0.03	4 : 0.03	> : 0.01	3 : 0.01	2 : 0.01	a : 0.01	= : 0.01	6 : 0.01	g : 0.01	h : 0.01	

#score	660.4277625810054
#seq	54
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_transcript_m3_run1.txt

#BEAR
ffff[annnnna]fff	chr2:236673809-236674148(+)$1	339	153	169	10.9970
:eeeeennnnneeeee	chrX:132912155-132912426(-)$1	271	193	209	9.6335
ggggggnnnnnggggg	chr6:2245022-2245278(-)$1	256	3	19	11.3351
ggggggnnnnnggggg	chr16:46941981-46942271(+)$1	290	183	199	11.3351
ggggggnnnnnggggg	chr8:128921831-128922096(+)$1	265	23	39	11.3351
ggggggnnnnnggggg	chr6:2218166-2218434(-)$1	268	163	179	11.3351
eeee[annnnna]eee	chr11:63894366-63894657(-)$1	291	186	202	10.9640
:eeeeennnnneeeee	chr7:23507486-23507778(-)$1	292	200	216	9.6335
ffffffnnnnnfffff	chr17:79915214-79915523(-)$1	309	133	149	10.7338
[eeeeennnnneeeee	chr11:65195661-65195882(+)$1	221	149	165	10.8276
ceeeeennnnneeeee	chr1:8082214-8082475(-)$1	261	86	102	10.6476
dddd[annnnna]ddd	chr6:158982968-158983220(+)$1	252	1	17	9.8935
ffffffnnnnnfffff	chr16:50635236-50635499(+)$1	263	18	34	10.7338
ffffffnnnnnfffff	chr1:35647699-35647961(-)$1	262	107	123	10.7338
!eeeeennnnneeeee	chr3:32861025-32861282(+)$1	257	29	45	10.7901
deeeeennnnneeeee	chr8:144678726-144678991(-)$1	265	47	63	10.4641
"""cccnnnnnccc]g	chr7:2678271-2678543(+)$1	272	9	25	10.8603
====[annnnna]===	chr17:7747621-7747885(+)$1	264	227	243	11.2718
bb[bbannnnna]bb]	chr11:65194253-65194463(+)$1	210	185	201	9.2850
ffffffnnnnnfffff	chr20:8134953-8135241(+)$1	288	226	242	10.7338
c[ddddnnnnnddddc	chr20:61568699-61569033(-)$1	334	68	84	9.7530
======nnnnn=====	chr4:74096447-74096710(-)$1	263	128	144	11.1641
gggg[annnnna]ggg	chr2:241565782-241566064(+)$1	282	69	85	11.4064
ccddddnnnnndddd]	chr11:64541160-64541450(-)$1	290	73	89	9.7536
ggggggnnnnnggggg	chr2:32583030-32583292(+)$1	262	120	136	11.3351
ffffffnnnnnfffff	chr1:2204970-2205252(+)$1	282	47	63	10.7338
[eeeeennnnneeeee	chr16:50644101-50644374(+)$1	273	99	115	10.8276
[a[cccnnnnnccc]a	chr7:99949159-99949492(+)$1	333	304	320	10.8906
ggggggnnnnnggggg	chr16:81505781-81506051(+)$1	270	216	232	11.3351
ffffffnnnnnfffff	chr11:65203666-65203880(+)$1	214	151	167	10.7338
###cccnnnnncccgg	chr2:102358328-102358674(+)$1	346	140	156	10.8068
======nnnnn=====	chr17:70550346-70550606(-)$1	260	226	242	11.1641
ffffffnnnnnfffff	chr16:75284012-75284282(-)$1	270	115	131	10.7338
[eeeeennnnneeeee	chr17:80187738-80187986(+)$1	248	56	72	10.8276
ffffffnnnnnfffff	chr22:29684629-29684877(+)$1	248	58	74	10.7338
ggg[bbnnnnnbbggg	chr16:88557837-88558116(+)$1	279	212	228	10.1195
dd[cccnnnnnccc]d	chr17:79963584-79963819(+)$1	235	79	95	10.3667
gg[cccnnnnncccgg	chr17:70557400-70557665(-)$1	265	12	28	11.2435
cc[cccnnnnnccc]c	chr20:60628976-60629234(-)$1	258	122	138	10.7868
ggggggnnnnnggggg	chr17:70556726-70557000(-)$1	274	24	40	11.3351
ffffffnnnnnfffff	chr17:55395737-55396012(+)$1	275	71	87	10.7338
[a[cccnnnnncccae	chr19:1411007-1411284(+)$1	277	6	22	10.9465
ggggggnnnnnggggg	chrX:73366242-73366604(-)$1	362	11	27	11.3351
eeee[annnnna]eee	chr17:75425251-75425502(+)$1	251	177	193	10.9640
[eeeeennnnneeeee	chr11:65195682-65195891(+)$1	209	128	144	10.8276
!!bb[annnnna]bb2	chr18:13445736-13446006(+)$1	270	82	98	9.6617
cc[abbnnnnnbb]a]	chr4:1241496-1241746(-)$1	250	221	237	9.5689
eeee[annnnna]eee	chr15:99193999-99194270(+)$1	271	213	229	10.9640
a[ddddnnnnndddd]	chr16:31198287-31198556(+)$1	269	217	233	9.8748
!!ddddnnnnndddd2	chr4:1236848-1237091(-)$1	243	35	51	9.7461
ggggggnnnnnggggg	chr16:81506883-81507121(+)$1	238	4	20	11.3351
"""cccnnnnncccff	chr22:20111031-20111290(+)$1	259	154	170	10.8218
ffffffnnnnnfffff	chr2:128568064-128568371(-)$1	307	235	251	10.7338
eee[bbnnnnnbb]ee	chr17:48797162-48797449(+)$1	287	234	250	9.6428
ggggggnnnnnggggg	chr1:46033889-46034201(+)$1	312	70	86	11.3351
ee[cccnnnnncccee	chr9:139698019-139698259(+)$1	240	84	100	10.9404
c!!cccnnnnnccc33	chr19:57351117-57351376(-)$1	259	232	248	10.8490
!!ddddnnnnndddd]	chr16:81542735-81542998(+)$1	263	102	118	10.0408
f[ddddnnnnndddd]	chr12:133319144-133319444(-)$1	300	178	194	9.9342
ggggggnnnnnggggg	chr2:235883713-235883981(+)$1	268	235	251	11.3351

#otherMatches

#Seq PSSM
GUCUGUGGGAUGGGGG	chr2:236673809-236674148(+)$1	339	153	169	10.9970
UGCAUUGCUGAAAUGU	chrX:132912155-132912426(-)$1	271	193	209	9.6335
CACCUGCCCCUCAGGU	chr6:2245022-2245278(-)$1	256	3	19	11.3351
AGUCCCGGUGGGGGAC	chr16:46941981-46942271(+)$1	290	183	199	11.3351
CAUUUAAGAACUGAGU	chr8:128921831-128922096(+)$1	265	23	39	11.3351
UGACAAACCACUUGUC	chr6:2218166-2218434(-)$1	268	163	179	11.3351
GCCCUGAGAAGCCGGG	chr11:63894366-63894657(-)$1	291	186	202	10.9640
GGGGCCUCUCUGGCCC	chr7:23507486-23507778(-)$1	292	200	216	9.6335
UGGUUAGGGGUUGGCC	chr17:79915214-79915523(-)$1	309	133	149	10.7338
CGCAGGAACGGCCUGU	chr11:65195661-65195882(+)$1	221	149	165	10.8276
CAUGCUGUGAAAGCAU	chr1:8082214-8082475(-)$1	261	86	102	10.6476
AAGUGCGUCCUGGACU	chr6:158982968-158983220(+)$1	252	1	17	9.8935
aggccguuuaguggcu	chr16:50635236-50635499(+)$1	263	18	34	10.7338
UAGUAGGGACUCUACU	chr1:35647699-35647961(-)$1	262	107	123	10.7338
AAGGGCCCCCAGUCUU	chr3:32861025-32861282(+)$1	257	29	45	10.7901
UUGCUAAGAAGUAGUA	chr8:144678726-144678991(-)$1	265	47	63	10.4641
CACGUCCUCCAGGCAC	chr7:2678271-2678543(+)$1	272	9	25	10.8603
AAGGGGAGGGACGUCU	chr17:7747621-7747885(+)$1	264	227	243	11.2718
UGGGUCUAAGUGUAUG	chr11:65194253-65194463(+)$1	210	185	201	9.2850
gaauggcuguaccauu	chr20:8134953-8135241(+)$1	288	226	242	10.7338
CUGUGCUGUCUGCGCG	chr20:61568699-61569033(-)$1	334	68	84	9.7530
AUGGUGUGACCCACCA	chr4:74096447-74096710(-)$1	263	128	144	11.1641
ggcugugauggggAGU	chr2:241565782-241566064(+)$1	282	69	85	11.4064
CCUCAAGUAAUUUGAU	chr11:64541160-64541450(-)$1	290	73	89	9.7536
AGGCGGGCCAGCUGCC	chr2:32583030-32583292(+)$1	262	120	136	11.3351
GCCUUGUGAGCCAGGG	chr1:2204970-2205252(+)$1	282	47	63	10.7338
GGAGCUGCUCUGGUUU	chr16:50644101-50644374(+)$1	273	99	115	10.8276
aguauggggugcauuc	chr7:99949159-99949492(+)$1	333	304	320	10.8906
GUGGCUCAUCUGGCCG	chr16:81505781-81506051(+)$1	270	216	232	11.3351
AGGCCCUGCCUGGGCC	chr11:65203666-65203880(+)$1	214	151	167	10.7338
UAAGUGAAGAGCACAC	chr2:102358328-102358674(+)$1	346	140	156	10.8068
ugcauggggugugugc	chr17:70550346-70550606(-)$1	260	226	242	11.1641
AGCUUUGGGGAGGAGC	chr16:75284012-75284282(-)$1	270	115	131	10.7338
GAGCCGAGGGGCGGCU	chr17:80187738-80187986(+)$1	248	56	72	10.8276
GCCCUGAUAACCGGGG	chr22:29684629-29684877(+)$1	248	58	74	10.7338
GGCGCCGGGAAGGGCC	chr16:88557837-88558116(+)$1	279	212	228	10.1195
CAGCCCCUGUCGGGAU	chr17:79963584-79963819(+)$1	235	79	95	10.3667
GGACAGGUAGGUUGCC	chr17:70557400-70557665(-)$1	265	12	28	11.2435
UGUGGCGCGUGGCCUC	chr20:60628976-60629234(-)$1	258	122	138	10.7868
cucaucagcaggaugg	chr17:70556726-70557000(-)$1	274	24	40	11.3351
UUGGGGGAGUGCUCCA	chr17:55395737-55396012(+)$1	275	71	87	10.7338
ACAUCCUGAGUGGGGC	chr19:1411007-1411284(+)$1	277	6	22	10.9465
ugggugaaauguacuc	chrX:73366242-73366604(-)$1	362	11	27	11.3351
AGAGGUGUGCUGGCUC	chr17:75425251-75425502(+)$1	251	177	193	10.9640
CGCAGGAACGGCCUGU	chr11:65195682-65195891(+)$1	209	128	144	10.8276
gucugugugugagggu	chr18:13445736-13446006(+)$1	270	82	98	9.6617
CGCGGCAGGGAGCACA	chr4:1241496-1241746(-)$1	250	221	237	9.5689
UGUGGCUUACUGGUAC	chr15:99193999-99194270(+)$1	271	213	229	10.9640
AGGAUCCUUUUGAUCG	chr16:31198287-31198556(+)$1	269	217	233	9.8748
CUUCUUCCUCAGAGAC	chr4:1236848-1237091(-)$1	243	35	51	9.7461
AUUCCUCAUGAGGGAA	chr16:81506883-81507121(+)$1	238	4	20	11.3351
GAAGCUACAUAAGUAG	chr22:20111031-20111290(+)$1	259	154	170	10.8218
CUUAUUAUAAGGAUGA	chr2:128568064-128568371(-)$1	307	235	251	10.7338
GGGGUCCGGGAGAGCC	chr17:48797162-48797449(+)$1	287	234	250	9.6428
UGCAGAAGUCCUCUGC	chr1:46033889-46034201(+)$1	312	70	86	11.3351
gguggcagauggcuuu	chr9:139698019-139698259(+)$1	240	84	100	10.9404
GGCGCUGUUCUGGUUG	chr19:57351117-57351376(-)$1	259	232	248	10.8490
uccauccuauagaugc	chr16:81542735-81542998(+)$1	263	102	118	10.0408
AAGCagcuaaauugua	chr12:133319144-133319444(-)$1	300	178	194	9.9342
CCCUAUCACUCGUGGG	chr2:235883713-235883981(+)$1	268	235	251	11.3351

#DB
((((.(.....).)))	chr2:236673809-236674148(+)$1	1	153	169	10.9970
.(((((.....)))))	chrX:132912155-132912426(-)$1	1	193	209	9.6335
((((((.....)))))	chr6:2245022-2245278(-)$1	1	3	19	11.3351
((((((.....)))))	chr16:46941981-46942271(+)$1	1	183	199	11.3351
((((((.....)))))	chr8:128921831-128922096(+)$1	1	23	39	11.3351
((((((.....)))))	chr6:2218166-2218434(-)$1	1	163	179	11.3351
((((.(.....).)))	chr11:63894366-63894657(-)$1	1	186	202	10.9640
.(((((.....)))))	chr7:23507486-23507778(-)$1	1	200	216	9.6335
((((((.....)))))	chr17:79915214-79915523(-)$1	1	133	149	10.7338
.(((((.....)))))	chr11:65195661-65195882(+)$1	1	149	165	10.8276
((((((.....)))))	chr1:8082214-8082475(-)$1	1	86	102	10.6476
((((.(.....).)))	chr6:158982968-158983220(+)$1	1	1	17	9.8935
((((((.....)))))	chr16:50635236-50635499(+)$1	1	18	34	10.7338
((((((.....)))))	chr1:35647699-35647961(-)$1	1	107	123	10.7338
.(((((.....)))))	chr3:32861025-32861282(+)$1	1	29	45	10.7901
)(((((.....)))))	chr8:144678726-144678991(-)$1	1	47	63	10.4641
...(((.....))).)	chr7:2678271-2678543(+)$1	1	9	25	10.8603
((((.(.....).)))	chr17:7747621-7747885(+)$1	1	227	243	11.2718
((.(((.....).)).	chr11:65194253-65194463(+)$1	1	185	201	9.2850
((((((.....)))))	chr20:8134953-8135241(+)$1	1	226	242	10.7338
(.((((.....)))))	chr20:61568699-61569033(-)$1	1	68	84	9.7530
((((((.....)))))	chr4:74096447-74096710(-)$1	1	128	144	11.1641
((((.(.....).)))	chr2:241565782-241566064(+)$1	1	69	85	11.4064
((((((.....)))).	chr11:64541160-64541450(-)$1	1	73	89	9.7536
((((((.....)))))	chr2:32583030-32583292(+)$1	1	120	136	11.3351
((((((.....)))))	chr1:2204970-2205252(+)$1	1	47	63	10.7338
.(((((.....)))))	chr16:50644101-50644374(+)$1	1	99	115	10.8276
.(.(((.....))).)	chr7:99949159-99949492(+)$1	1	304	320	10.8906
((((((.....)))))	chr16:81505781-81506051(+)$1	1	216	232	11.3351
((((((.....)))))	chr11:65203666-65203880(+)$1	1	151	167	10.7338
...(((.....)))))	chr2:102358328-102358674(+)$1	1	140	156	10.8068
((((((.....)))))	chr17:70550346-70550606(-)$1	1	226	242	11.1641
((((((.....)))))	chr16:75284012-75284282(-)$1	1	115	131	10.7338
.(((((.....)))))	chr17:80187738-80187986(+)$1	1	56	72	10.8276
((((((.....)))))	chr22:29684629-29684877(+)$1	1	58	74	10.7338
(((.((.....)))))	chr16:88557837-88558116(+)$1	1	212	228	10.1195
((.(((.....))).)	chr17:79963584-79963819(+)$1	1	79	95	10.3667
((.(((.....)))))	chr17:70557400-70557665(-)$1	1	12	28	11.2435
((.(((.....))).)	chr20:60628976-60629234(-)$1	1	122	138	10.7868
((((((.....)))))	chr17:70556726-70557000(-)$1	1	24	40	11.3351
((((((.....)))))	chr17:55395737-55396012(+)$1	1	71	87	10.7338
.(.(((.....)))))	chr19:1411007-1411284(+)$1	1	6	22	10.9465
((((((.....)))))	chrX:73366242-73366604(-)$1	1	11	27	11.3351
((((.(.....).)))	chr17:75425251-75425502(+)$1	1	177	193	10.9640
.(((((.....)))))	chr11:65195682-65195891(+)$1	1	128	144	10.8276
..((.(.....).)).	chr18:13445736-13446006(+)$1	1	82	98	9.6617
((.(((.....)).).	chr4:1241496-1241746(-)$1	1	221	237	9.5689
((((.(.....).)))	chr15:99193999-99194270(+)$1	1	213	229	10.9640
(.((((.....)))).	chr16:31198287-31198556(+)$1	1	217	233	9.8748
..((((.....)))).	chr4:1236848-1237091(-)$1	1	35	51	9.7461
((((((.....)))))	chr16:81506883-81507121(+)$1	1	4	20	11.3351
...(((.....)))))	chr22:20111031-20111290(+)$1	1	154	170	10.8218
((((((.....)))))	chr2:128568064-128568371(-)$1	1	235	251	10.7338
(((.((.....)).))	chr17:48797162-48797449(+)$1	1	234	250	9.6428
((((((.....)))))	chr1:46033889-46034201(+)$1	1	70	86	11.3351
((.(((.....)))))	chr9:139698019-139698259(+)$1	1	84	100	10.9404
(..(((.....)))..	chr19:57351117-57351376(-)$1	1	232	248	10.8490
..((((.....)))).	chr16:81542735-81542998(+)$1	1	102	118	10.0408
(.((((.....)))).	chr12:133319144-133319444(-)$1	1	178	194	9.9342
((((((.....)))))	chr2:235883713-235883981(+)$1	1	235	251	11.3351

#PSSM
g : 0.23	f : 0.19	[ : 0.09	c : 0.09	e : 0.08	! : 0.06	d : 0.05	= : 0.05	: : 0.03	" : 0.03	b : 0.01	# : 0.01	a : 0.01	
e : 0.23	g : 0.23	f : 0.18	! : 0.06	= : 0.05	[ : 0.05	c : 0.05	d : 0.03	" : 0.03	a : 0.03	b : 0.01	# : 0.01	
e : 0.21	g : 0.21	f : 0.18	[ : 0.13	d : 0.11	= : 0.05	" : 0.03	# : 0.01	b : 0.01	! : 0.01	
e : 0.19	g : 0.19	f : 0.18	c : 0.16	d : 0.11	= : 0.05	b : 0.03	[ : 0.03	a : 0.01	
g : 0.18	f : 0.16	c : 0.16	e : 0.15	[ : 0.13	d : 0.09	b : 0.06	= : 0.03	
g : 0.18	f : 0.16	c : 0.16	a : 0.15	e : 0.15	d : 0.09	b : 0.05	= : 0.03	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
g : 0.18	f : 0.16	c : 0.16	a : 0.15	e : 0.15	d : 0.09	b : 0.05	= : 0.03	
g : 0.18	f : 0.16	c : 0.16	] : 0.15	e : 0.15	d : 0.09	b : 0.05	= : 0.03	
g : 0.21	e : 0.19	f : 0.18	c : 0.16	d : 0.11	= : 0.05	b : 0.03	] : 0.03	
g : 0.24	e : 0.23	f : 0.19	d : 0.11	] : 0.06	= : 0.05	b : 0.03	a : 0.03	3 : 0.01	
g : 0.26	e : 0.24	f : 0.19	] : 0.09	= : 0.05	d : 0.03	c : 0.03	2 : 0.03	a : 0.01	3 : 0.01	

#score	641.1881840956755
#seq	60
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_transcript_m3_run1.txt

#BEAR
ffffffyyyyyyyyyyyyyyyy	chr11:62284215-62284446(-)$1	231	140	162	20.0012
[a!!bbuuuuuuuuuuuubb33	chr12:56510460-56510686(+)$1	226	163	185	22.1017
ceeeeettttttttttteeeee	chr6:71108960-71109189(+)$1	229	106	128	22.4398
[eeeeevvvvvvvvvvvvveee	chr16:227331-227541(+)$1	210	62	84	22.6103
feeeeeuuuuuuuuuuuueeee	chr3:6618484-6618792(+)$1	308	269	291	22.9912
fffffuuuuuuuuuuuufffff	chr19:4035664-4035965(+)$1	301	37	59	21.6034
ggggggtttttttttttggggg	chr19:8387055-8387275(+)$1	220	187	209	22.2341
ggddddwwwwwwwwwwwwwwdd	chr6:8079828-8080068(-)$1	240	158	180	21.1692
eeeeeuuuuuuuuuuuueeeee	chr2:98264436-98264681(+)$1	245	3	25	22.0772
!!dddduuuuuuuuuuuudddd	chr5:104709290-104709558(-)$1	268	53	75	22.7880
ccc!!attttttttttta22cc	chr20:2442301-2442542(-)$1	241	189	211	21.9680
hhhh[awwwwwwwwwwwwwwa]	chr5:180670753-180671002(-)$1	249	135	157	20.5779
eeeeeuuuuuuuuuuuueeeee	chr7:158424051-158424344(-)$1	293	140	162	22.0772
ddddvvvvvvvvvvvvvdddd:	chr7:56169257-56169498(-)$1	241	142	164	19.6808
"""cccuuuuuuuuuuuuccc2	chr4:48862998-48863276(+)$1	278	98	120	22.7612
d[bbwwwwwwwwwwwwwwbb]d	chr8:30669846-30670092(-)$1	246	47	69	20.0212
eeddddtttttttttttdddd>	chr6:133135610-133135853(+)$1	243	48	70	21.7643
c[ddddtttttttttttdddd]	chr16:56643216-56643470(+)$1	254	209	231	22.1794
:cccvvvvvvvvvvvvvccccc	chr16:223497-223731(+)$1	234	1	23	20.1206
""dddduuuuuuuuuuuudddd	chr11:8704241-8704464(+)$1	223	192	214	22.5975
fffffuuuuuuuuuuuufffff	chr2:85824518-85824775(+)$1	257	152	174	21.6034
ggggggtttttttttttggggg	chr8:91269472-91269746(+)$1	274	35	57	22.2341
dd[cccyyyyyyyyyyyyyyyy	chr1:8923192-8923434(-)$1	242	150	172	19.9117
ffffffvvvvvvvvvvvvvfff	chr2:97541828-97542071(-)$1	243	3	25	22.0091
eee[bbuuuuuuuuuuuubb22	chr2:176042833-176043077(-)$1	244	31	53	21.8257
ccccccuuuuuuuuuuuuccca	chr7:75695728-75696006(+)$1	278	146	168	22.8136
ggggggvvvvvvvvvvvvvggg	chr16:88876057-88876305(-)$1	248	31	53	22.4129
ddd[bbuuuuuuuuuuuubb]d	chr7:75933409-75933660(+)$1	251	63	85	21.7052
gggggguuuuuuuuuuuugggg	chr16:204289-204594(+)$1	305	72	94	22.8762
a!!ccctttttttttttccc22	chr19:18499849-18500074(+)$1	225	191	213	22.2727
fffffftttttttttttfffff	chr14:102547552-102547827(-)$1	275	121	143	21.8876
======wwwwwwwwwwwwww==	chr11:62300894-62301151(-)$1	257	57	79	21.3314
ffffffyyyyyyyyyyyyyyyy	chr2:98263714-98263961(+)$1	247	67	89	20.0012
iiiiiitttttttttttiiiii	chr15:44063589-44063825(+)$1	236	12	34	21.7867
fffffuuuuuuuuuuuufffff	chr11:5290691-5290970(-)$1	279	89	111	21.6034
fffffattttttttttta]fff	chr1:46775795-46776023(+)$1	228	122	144	22.4195
!!ddddvvvvvvvvvvvvvddd	chr1:212228428-212228713(+)$1	285	161	183	22.3416
!eeeeeuuuuuuuuuuuueeee	chr19:42375316-42375547(+)$1	231	36	58	23.0879
fffffuuuuuuuuuuuufffff	chr4:770471-770792(-)$1	321	46	68	21.6034
GGGcccuuuuuuuuuuuuccc:	chr3:6629425-6629696(+)$1	271	125	147	20.5330
c!!cccwwwwwwwwwwwwwwcc	chr15:20624898-20625138(-)$1	240	89	111	21.4042
gggggguuuuuuuuuuuugggg	chr8:91268482-91268720(+)$1	238	16	38	22.8762
b[ddddtttttttttttdddd]	chr14:69847059-69847330(-)$1	271	205	227	21.9315
eeeeewwwwwwwwwwwwwweee	chr5:149829162-149829400(-)$1	238	25	47	21.7147
eeeeeuuuuuuuuuuuueeeee	chr1:165624532-165624788(+)$1	256	53	75	22.0772
!!dddduuuuuuuuuuuudddd	chr16:56717812-56718084(+)$1	272	77	99	22.7880
""ddddvvvvvvvvvvvvvddd	chr11:62299844-62300079(-)$1	235	121	143	22.1511
eee[awwwwwwwwwwwwwwa]e	chr11:57509590-57509821(+)$1	231	66	88	21.6231
feeeeeuuuuuuuuuuuueeee	chr8:11696008-11696249(+)$1	241	53	75	22.9912
:eeeeettttttttttteeeee	chr10:79793533-79793763(+)$1	230	55	77	21.4786

#otherMatches

#Seq PSSM
ACUGUCCUCCUCUUCUAGCAAU	chr11:62284215-62284446(-)$1	231	140	162	20.0012
GCGAGUAGUAGCGAGGAGACGA	chr12:56510460-56510686(+)$1	226	163	185	22.1017
AAGCAACAUUGCCUUACUUGUU	chr6:71108960-71109189(+)$1	229	106	128	22.4398
CCUCCAAAUACCGUUAAGCUGG	chr16:227331-227541(+)$1	210	62	84	22.6103
acucaagaaaaacaaaaguuga	chr3:6618484-6618792(+)$1	308	269	291	22.9912
CGUGCACACCCACACCCGCAUG	chr19:4035664-4035965(+)$1	301	37	59	21.6034
GAUGCUCCUUUAAAUAAAGCGU	chr19:8387055-8387275(+)$1	220	187	209	22.2341
AGUUGAGAUCCAGUUAUAAAUU	chr6:8079828-8080068(-)$1	240	158	180	21.1692
CACCUUUUUUCCCUUUUAGGUG	chr2:98264436-98264681(+)$1	245	3	25	22.0772
aaucuaaaaaaaauuacauaga	chr5:104709290-104709558(-)$1	268	53	75	22.7880
ACAUAGUCCUUUUAUCUCCUUG	chr20:2442301-2442542(-)$1	241	189	211	21.9680
UGCUAGUUUCUCUAAGCCAUCC	chr5:180670753-180671002(-)$1	249	135	157	20.5779
GGAGAUAACUCAAAACUUCUUC	chr7:158424051-158424344(-)$1	293	140	162	22.0772
GGGCAAAUGUUUGUGUGGCCUC	chr7:56169257-56169498(-)$1	241	142	164	19.6808
AUAAGAAAAUAAAUGAUAUCUG	chr4:48862998-48863276(+)$1	278	98	120	22.7612
ggcggagggagaggggagcggc	chr8:30669846-30670092(-)$1	246	47	69	20.0212
ACAGGGGACCUGAAAAACCCUU	chr6:133135610-133135853(+)$1	243	48	70	21.7643
CUUUAUAUGCCUUAAAAAUAAC	chr16:56643216-56643470(+)$1	254	209	231	22.1794
UGGCCGCCCACCUCCCCGCCGA	chr16:223497-223731(+)$1	234	1	23	20.1206
AGUCAUCCACUCCCUACCAUGG	chr11:8704241-8704464(+)$1	223	192	214	22.5975
ACCUUGAAUCCUCAUUAAAGGU	chr2:85824518-85824775(+)$1	257	152	174	21.6034
aauucaacauccauucaugaau	chr8:91269472-91269746(+)$1	274	35	57	22.2341
AGCGUCUCCUCCUUUCUUCUCU	chr1:8923192-8923434(-)$1	242	150	172	19.9117
GCCUGCUUUUCUCCUCGCCGCA	chr2:97541828-97542071(-)$1	243	3	25	22.0091
GGUUGCUUUCUUGAUUUUGUUU	chr2:176042833-176043077(-)$1	244	31	53	21.8257
GUGGGCGCAUCAAUAAAAGCCG	chr7:75695728-75696006(+)$1	278	146	168	22.8136
UGGGGACCUCACCCUCCCAUCC	chr16:88876057-88876305(-)$1	248	31	53	22.4129
GAGACUGCCGCCAAGUAAAGCC	chr7:75933409-75933660(+)$1	251	63	85	21.7052
CGGUCGUAUCCUCUGUCCUGAC	chr16:204289-204594(+)$1	305	72	94	22.8762
GACCUCAGUUUCUCUAGGAGAC	chr19:18499849-18500074(+)$1	225	191	213	22.2727
CUGAGCUGUAUCUUGAUGUUUA	chr14:102547552-102547827(-)$1	275	121	143	21.8876
GGACUUGGGUGGCAGAGGAGGG	chr11:62300894-62301151(-)$1	257	57	79	21.3314
guuuuguuuuUUGUUUUUUCUU	chr2:98263714-98263961(+)$1	247	67	89	20.0012
GGACCAGUUUAUGUUUGUGGUU	chr15:44063589-44063825(+)$1	236	12	34	21.7867
CAGAGAUUUUUUGACAGCUUUG	chr11:5290691-5290970(-)$1	279	89	111	21.6034
CCUCUCGAUCACAUACAGAAGA	chr1:46775795-46776023(+)$1	228	122	144	22.4195
agugggagacccccagcagccc	chr1:212228428-212228713(+)$1	285	161	183	22.3416
GCUGUUACAAAGUGCCCCAGCA	chr19:42375316-42375547(+)$1	231	36	58	23.0879
uccucugcagugacaaugggga	chr4:770471-770792(-)$1	321	46	68	21.6034
gacggggcugaaaaacuaccua	chr3:6629425-6629696(+)$1	271	125	147	20.5330
cuuuugaaaauuaagaaauaca	chr15:20624898-20625138(-)$1	240	89	111	21.4042
cuuauuaagaaguagaaaaaua	chr8:91268482-91268720(+)$1	238	16	38	22.8762
UUAGAUGAAAUGUGAGGAUCUU	chr14:69847059-69847330(-)$1	271	205	227	21.9315
ACCUCGCCCCGUGACCUCAGAG	chr5:149829162-149829400(-)$1	238	25	47	21.7147
GUUCUUUCUUCUUUUUCAGAAC	chr1:165624532-165624788(+)$1	256	53	75	22.0772
GUGGGCUGUGCCAAGUGUGCCC	chr16:56717812-56718084(+)$1	272	77	99	22.7880
AAGGUCCAGAUGUUCAUAUGAC	chr11:62299844-62300079(-)$1	235	121	143	22.1511
GUGGUGGAAGAGUUGAAGAAGU	chr11:57509590-57509821(+)$1	231	66	88	21.6231
UACCUGACCACUCUCUCCCAGG	chr8:11696008-11696249(+)$1	241	53	75	22.9912
GCGUUGAUAUGAUUGGCCGGCG	chr10:79793533-79793763(+)$1	230	55	77	21.4786

#DB
((((((................	chr11:62284215-62284446(-)$1	1	140	162	20.0012
.(..((............))..	chr12:56510460-56510686(+)$1	1	163	185	22.1017
((((((...........)))))	chr6:71108960-71109189(+)$1	1	106	128	22.4398
.(((((.............)))	chr16:227331-227541(+)$1	1	62	84	22.6103
)(((((............))))	chr3:6618484-6618792(+)$1	1	269	291	22.9912
(((((............)))))	chr19:4035664-4035965(+)$1	1	37	59	21.6034
((((((...........)))))	chr19:8387055-8387275(+)$1	1	187	209	22.2341
((((((..............))	chr6:8079828-8080068(-)$1	1	158	180	21.1692
(((((............)))))	chr2:98264436-98264681(+)$1	1	3	25	22.0772
..((((............))))	chr5:104709290-104709558(-)$1	1	53	75	22.7880
(((..(...........)..))	chr20:2442301-2442542(-)$1	1	189	211	21.9680
((((.(..............).	chr5:180670753-180671002(-)$1	1	135	157	20.5779
(((((............)))))	chr7:158424051-158424344(-)$1	1	140	162	22.0772
((((.............)))).	chr7:56169257-56169498(-)$1	1	142	164	19.6808
...(((............))).	chr4:48862998-48863276(+)$1	1	98	120	22.7612
(.((..............)).)	chr8:30669846-30670092(-)$1	1	47	69	20.0212
((((((...........)))).	chr6:133135610-133135853(+)$1	1	48	70	21.7643
(.((((...........)))).	chr16:56643216-56643470(+)$1	1	209	231	22.1794
.(((.............)))((	chr16:223497-223731(+)$1	1	1	23	20.1206
..((((............))))	chr11:8704241-8704464(+)$1	1	192	214	22.5975
(((((............)))))	chr2:85824518-85824775(+)$1	1	152	174	21.6034
((((((...........)))))	chr8:91269472-91269746(+)$1	1	35	57	22.2341
((.(((................	chr1:8923192-8923434(-)$1	1	150	172	19.9117
((((((.............)))	chr2:97541828-97542071(-)$1	1	3	25	22.0091
(((.((............))..	chr2:176042833-176043077(-)$1	1	31	53	21.8257
)))(((............)))(	chr7:75695728-75696006(+)$1	1	146	168	22.8136
((((((.............)))	chr16:88876057-88876305(-)$1	1	31	53	22.4129
(((.((............)).)	chr7:75933409-75933660(+)$1	1	63	85	21.7052
((((((............))))	chr16:204289-204594(+)$1	1	72	94	22.8762
(..(((...........)))..	chr19:18499849-18500074(+)$1	1	191	213	22.2727
((((((...........)))))	chr14:102547552-102547827(-)$1	1	121	143	21.8876
((((((..............))	chr11:62300894-62301151(-)$1	1	57	79	21.3314
((((((................	chr2:98263714-98263961(+)$1	1	67	89	20.0012
((((((...........)))))	chr15:44063589-44063825(+)$1	1	12	34	21.7867
(((((............)))))	chr11:5290691-5290970(-)$1	1	89	111	21.6034
((((((...........).)))	chr1:46775795-46776023(+)$1	1	122	144	22.4195
..((((.............)))	chr1:212228428-212228713(+)$1	1	161	183	22.3416
.(((((............))))	chr19:42375316-42375547(+)$1	1	36	58	23.0879
(((((............)))))	chr4:770471-770792(-)$1	1	46	68	21.6034
)))(((............))).	chr3:6629425-6629696(+)$1	1	125	147	20.5330
(..(((..............))	chr15:20624898-20625138(-)$1	1	89	111	21.4042
((((((............))))	chr8:91268482-91268720(+)$1	1	16	38	22.8762
(.((((...........)))).	chr14:69847059-69847330(-)$1	1	205	227	21.9315
(((((..............)))	chr5:149829162-149829400(-)$1	1	25	47	21.7147
(((((............)))))	chr1:165624532-165624788(+)$1	1	53	75	22.0772
..((((............))))	chr16:56717812-56718084(+)$1	1	77	99	22.7880
..((((.............)))	chr11:62299844-62300079(-)$1	1	121	143	22.1511
(((.(..............).)	chr11:57509590-57509821(+)$1	1	66	88	21.6231
)(((((............))))	chr8:11696008-11696249(+)$1	1	53	75	22.9912
.(((((...........)))))	chr10:79793533-79793763(+)$1	1	55	77	21.4786

#PSSM
f : 0.21	e : 0.14	g : 0.12	c : 0.10	! : 0.08	d : 0.08	" : 0.06	[ : 0.04	: : 0.04	h : 0.02	a : 0.02	= : 0.02	i : 0.02	G : 0.02	b : 0.02	
e : 0.25	f : 0.18	g : 0.12	! : 0.10	c : 0.06	d : 0.06	" : 0.06	[ : 0.06	a : 0.02	h : 0.02	= : 0.02	i : 0.02	G : 0.02	
e : 0.23	d : 0.21	f : 0.18	g : 0.10	! : 0.06	c : 0.06	h : 0.02	" : 0.02	b : 0.02	[ : 0.02	= : 0.02	i : 0.02	G : 0.02	
e : 0.19	d : 0.19	f : 0.18	c : 0.14	g : 0.10	[ : 0.06	! : 0.04	h : 0.02	b : 0.02	= : 0.02	i : 0.02	
e : 0.19	f : 0.18	d : 0.18	c : 0.12	g : 0.10	b : 0.06	v : 0.04	! : 0.02	[ : 0.02	w : 0.02	= : 0.02	i : 0.02	a : 0.02	
d : 0.18	u : 0.14	e : 0.12	c : 0.12	g : 0.10	f : 0.08	b : 0.06	a : 0.06	w : 0.06	v : 0.04	= : 0.02	i : 0.02	
u : 0.42	t : 0.23	v : 0.14	w : 0.14	y : 0.06	
u : 0.42	t : 0.23	v : 0.14	w : 0.14	y : 0.06	
u : 0.42	t : 0.23	v : 0.14	w : 0.14	y : 0.06	
u : 0.42	t : 0.23	v : 0.14	w : 0.14	y : 0.06	
u : 0.42	t : 0.23	v : 0.14	w : 0.14	y : 0.06	
u : 0.42	t : 0.23	v : 0.14	w : 0.14	y : 0.06	
u : 0.42	t : 0.23	v : 0.14	w : 0.14	y : 0.06	
u : 0.42	t : 0.23	v : 0.14	w : 0.14	y : 0.06	
u : 0.42	t : 0.23	v : 0.14	w : 0.14	y : 0.06	
u : 0.42	t : 0.23	v : 0.14	w : 0.14	y : 0.06	
u : 0.42	t : 0.23	v : 0.14	w : 0.14	y : 0.06	
u : 0.27	w : 0.14	e : 0.10	v : 0.10	f : 0.10	d : 0.08	y : 0.06	g : 0.04	a : 0.04	c : 0.04	i : 0.02	
e : 0.16	d : 0.14	w : 0.12	v : 0.10	f : 0.10	c : 0.10	b : 0.08	g : 0.08	y : 0.06	2 : 0.02	i : 0.02	] : 0.02	
e : 0.19	d : 0.18	f : 0.14	g : 0.10	c : 0.10	b : 0.08	w : 0.08	y : 0.06	2 : 0.02	i : 0.02	a : 0.02	
e : 0.19	d : 0.19	f : 0.14	c : 0.12	g : 0.10	y : 0.06	] : 0.06	2 : 0.04	3 : 0.02	a : 0.02	= : 0.02	i : 0.02	
e : 0.21	d : 0.16	f : 0.14	g : 0.10	y : 0.06	c : 0.06	] : 0.06	2 : 0.06	: : 0.04	3 : 0.02	> : 0.02	a : 0.02	= : 0.02	i : 0.02	

#score	1091.063008547888
#seq	50
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF014MZO_POLR2G_transcript_m2_run1.txt

#BEAR
ddd[aooooooa]ddd	chr14:39742462-39742719(+)$1	257	101	117	9.5599
eeeeeooooooeeeee	chr16:89537872-89538126(-)$1	254	37	53	13.6026
eeeeeooooooeeeee	chr21:47567392-47567659(-)$1	267	45	61	13.6026
c[eeeeellleeeee]	chr2:10284231-10284493(+)$1	262	183	199	8.3402
eeeeeooooooeeeee	chr1:2190194-2190447(+)$1	253	47	63	13.6026
eeeeennnnneeeeed	chr17:79957059-79957279(+)$1	220	0	16	9.0608
eeeeeooooooeeeee	chr17:18965300-18965552(+)$1	252	9	25	13.6026
eeeeeooooooeeeee	chr10:114711999-114712260(+)$1	261	213	229	13.6026
c[eeeeellleeeee]	chr14:39735943-39736229(+)$1	286	160	176	8.3402
eeeeeooooooeeeee	chr20:34325012-34325253(-)$1	241	178	194	13.6026
eeeeeooooooeeeee	chr2:236459635-236459893(+)$1	258	63	79	13.6026
eeeeeooooooeeeee	chr2:11423267-11423495(-)$1	228	47	63	13.6026
gggggooooooggggg	chr21:47567323-47567558(-)$1	235	129	145	10.3009
c[cccooooooccc]c	chr2:153258775-153259051(+)$1	276	258	274	9.3277
gggggooooooggggg	chr17:79222499-79222763(-)$1	264	112	128	10.3009
eeeeeooooooeeeee	chr2:58398778-58399083(-)$1	305	57	73	13.6026
eeeeeooooooeeeee	chr17:72761901-72762201(+)$1	300	45	61	13.6026
gggggooooooggggg	chr1:2186242-2186541(+)$1	299	6	22	10.3009
eeeeeooooooeeeee	chr12:112027418-112027665(-)$1	247	193	209	13.6026

#otherMatches

#Seq PSSM
guuguuuguuugggac	chr14:39742462-39742719(+)$1	257	101	117	9.5599
ucccaaguagcuggga	chr16:89537872-89538126(-)$1	254	37	53	13.6026
ucccaaagcacuggga	chr21:47567392-47567659(-)$1	267	45	61	13.6026
CAGAGACGAGGUCUCA	chr2:10284231-10284493(+)$1	262	183	199	8.3402
ucccaaagugcuggga	chr1:2190194-2190447(+)$1	253	47	63	13.6026
GGCUGUUUCCCAGCCC	chr17:79957059-79957279(+)$1	220	0	16	9.0608
gagagguagcguuuuc	chr17:18965300-18965552(+)$1	252	9	25	13.6026
GGGGCGGGGAGGCCCC	chr10:114711999-114712260(+)$1	261	213	229	13.6026
GGCCGCCCGAGGCGGG	chr14:39735943-39736229(+)$1	286	160	176	8.3402
ucccaaagugcuggga	chr20:34325012-34325253(-)$1	241	178	194	13.6026
ugagccaccgcgcucg	chr2:236459635-236459893(+)$1	258	63	79	13.6026
ucccaaagugcuggga	chr2:11423267-11423495(-)$1	228	47	63	13.6026
guggaauuuuaucuau	chr21:47567323-47567558(-)$1	235	129	145	10.3009
AGAUCUUUUGUGAUGU	chr2:153258775-153259051(+)$1	276	258	274	9.3277
GGCCGGCCCCAUGGCC	chr17:79222499-79222763(-)$1	264	112	128	10.3009
acccgauuuuccgggu	chr2:58398778-58399083(-)$1	305	57	73	13.6026
ucccaaagugcugggg	chr17:72761901-72762201(+)$1	300	45	61	13.6026
GCAGCCCCCCUGCUGC	chr1:2186242-2186541(+)$1	299	6	22	10.3009
ucccgaguagcuggga	chr12:112027418-112027665(-)$1	247	193	209	13.6026

#DB
(((.(......).)))	chr14:39742462-39742719(+)$1	1	101	117	9.5599
(((((......)))))	chr16:89537872-89538126(-)$1	1	37	53	13.6026
(((((......)))))	chr21:47567392-47567659(-)$1	1	45	61	13.6026
(.(((((...))))).	chr2:10284231-10284493(+)$1	1	183	199	8.3402
(((((......)))))	chr1:2190194-2190447(+)$1	1	47	63	13.6026
(((((.....)))))(	chr17:79957059-79957279(+)$1	1	0	16	9.0608
(((((......)))))	chr17:18965300-18965552(+)$1	1	9	25	13.6026
(((((......)))))	chr10:114711999-114712260(+)$1	1	213	229	13.6026
(.(((((...))))).	chr14:39735943-39736229(+)$1	1	160	176	8.3402
(((((......)))))	chr20:34325012-34325253(-)$1	1	178	194	13.6026
(((((......)))))	chr2:236459635-236459893(+)$1	1	63	79	13.6026
(((((......)))))	chr2:11423267-11423495(-)$1	1	47	63	13.6026
(((((......)))))	chr21:47567323-47567558(-)$1	1	129	145	10.3009
(.(((......))).)	chr2:153258775-153259051(+)$1	1	258	274	9.3277
(((((......)))))	chr17:79222499-79222763(-)$1	1	112	128	10.3009
(((((......)))))	chr2:58398778-58399083(-)$1	1	57	73	13.6026
(((((......)))))	chr17:72761901-72762201(+)$1	1	45	61	13.6026
(((((......)))))	chr1:2186242-2186541(+)$1	1	6	22	10.3009
(((((......)))))	chr12:112027418-112027665(-)$1	1	193	209	13.6026

#PSSM
e : 0.63	c : 0.15	g : 0.15	d : 0.05	
e : 0.63	[ : 0.15	g : 0.15	d : 0.05	
e : 0.73	g : 0.15	d : 0.05	c : 0.05	
e : 0.73	g : 0.15	[ : 0.05	c : 0.05	
e : 0.73	g : 0.15	a : 0.05	c : 0.05	
o : 0.84	e : 0.10	n : 0.05	
o : 0.84	e : 0.10	n : 0.05	
o : 0.84	l : 0.10	n : 0.05	
o : 0.84	l : 0.10	n : 0.05	
o : 0.84	l : 0.10	n : 0.05	
o : 0.84	e : 0.15	
e : 0.73	g : 0.15	a : 0.05	c : 0.05	
e : 0.73	g : 0.15	] : 0.05	c : 0.05	
e : 0.73	g : 0.15	d : 0.05	c : 0.05	
e : 0.73	g : 0.15	d : 0.05	] : 0.05	
e : 0.57	g : 0.15	d : 0.10	] : 0.10	c : 0.05	

#score	225.16096475383674
#seq	19
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_UTR_m3_run2.txt

#BEAR
eee[cccqqqqqqqqccc]eee	chr3:52741713-52742026(+)$1	313	221	243	15.5908
fffa[bbqqqqqqqqbb]a444	chr7:2290460-2290836(+)$1	376	241	263	14.4552
gggggggqqqqqqqqggggggg	chr3:184052905-184053188(+)$1	283	59	81	15.8659
:ffffffqqqqqqqqffffff:	chr11:57507792-57508043(+)$1	251	48	70	13.5648
!ffffffqqqqqqqqffffffb	chr1:43167620-43167853(+)$1	233	129	151	15.0695
fffddddqqqqqqqqdddd]ff	chr3:50367407-50367740(-)$1	333	113	135	14.1504
###ddddqqqqqqqqdddd444	chr7:158738406-158738673(+)$1	267	29	51	14.0973
cbb[cccqqqqqqqqccc]bb:	chr11:118915021-118915289(-)$1	268	108	130	14.3483
gggggggqqqqqqqqggggggg	chr2:97525473-97525783(-)$1	310	56	78	15.8659
ddd[cccqqqqqqqqccc]ddd	chr9:86583887-86584147(-)$1	260	160	182	14.9247
gggggggqqqqqqqqggggggg	chr8:67834097-67834368(-)$1	271	16	38	15.8659
cffffffqqqqqqqqffffff:	chr20:30389255-30389540(+)$1	285	141	163	14.4753
ee[a[bbqqqqqqqqbb]a]ee	chr17:42268736-42269038(+)$1	302	250	272	14.2909
ffff[bbqqqqqqqqbb22fff	chrX:154006968-154007181(-)$1	213	107	129	14.1720
[ffffffqqqqqqqqffffff]	chr15:66795718-66795939(-)$1	221	122	144	15.3309
hffffffqqqqqqqqffffff:	chrX:141290346-141290592(-)$1	246	118	140	14.2732
ccc[cccqqqqqqqqcccccc3	chr3:49397446-49397692(-)$1	246	175	197	15.9628
eeeeebbqqqqqqqqbb]eeee	chr19:39923860-39924091(-)$1	231	141	163	13.8986
c[bb!!aqqqqqqqqa22bb]c	chr19:47341436-47341694(-)$1	258	129	151	13.7005
:ffffffqqqqqqqqffffff:	chr6:133135780-133135985(+)$1	205	63	85	13.5648
&ffffffqqqqqqqqffffff5	chr10:28909712-28909947(+)$1	235	85	107	13.9260
ccc[cccqqqqqqqqcccccc]	chrX:48750698-48750939(-)$1	241	88	110	15.9233
d[eeeeeqqqqqqqqeeeee]d	chr7:98992161-98992411(+)$1	250	8	30	14.1028
fffffbbqqqqqqqqbb]ffff	chrX:152915876-152916172(+)$1	296	137	159	14.4547
ggg[cccqqqqqqqqccc]ggg	chr19:56206640-56206877(+)$1	237	71	93	16.3426
iiiiiiiqqqqqqqqiiiiiii	chr17:61909049-61909270(+)$1	221	121	143	15.7213
gggggggqqqqqqqqggggggg	chr17:73017043-73017331(+)$1	288	129	151	15.8659
:bb[cccqqqqqqqqccc]bb:	chr1:6650961-6651215(-)$1	254	91	113	13.4378
ggggggaqqqqqqqqa]ggggg	chr11:64084820-64085087(-)$1	267	206	228	15.7800
##eeeeeqqqqqqqqeeeee33	chr7:100849342-100849587(-)$1	245	216	238	14.4654
bb[ddddqqqqqqqqdddd]bb	chr19:4039098-4039345(+)$1	247	100	122	13.5151
b!!ddddqqqqqqqqdddd22b	chr18:19209053-19209276(+)$1	223	18	40	13.5804
iiiiiiiqqqqqqqqiiiiiii	chr1:11734702-11734944(-)$1	242	172	194	15.7213
a!!ddddqqqqqqqqdddd22a	chr19:49120983-49121231(-)$1	248	64	86	13.9378
:ffffffqqqqqqqqffffff:	chr15:66795764-66795968(-)$1	204	151	173	13.5648
cc!!cccqqqqqqqqccc333c	chr6:34664424-34664662(-)$1	238	15	37	16.2618
gggggggqqqqqqqqggggggg	chr15:48634495-48634755(+)$1	260	155	177	15.8659
ccc!!bbqqqqqqqqbb22ccc	chr7:6442059-6442301(+)$1	242	24	46	14.3647
fff[cccqqqqqqqqccc]fff	chr22:41924778-41925048(+)$1	270	199	221	15.9820
cc!!cccqqqqqqqqccc]ccc	chr17:49238419-49238643(+)$1	224	142	164	16.0616
!ffffffqqqqqqqqffffffd	chr19:3976094-3976322(-)$1	228	86	108	15.1066
g"""cccqqqqqqqqccc333g	chr19:12907723-12907934(-)$1	211	155	177	16.1229
gggggggqqqqqqqqggggggg	chr16:30435247-30435479(-)$1	232	30	52	15.8659
effffffqqqqqqqqffffff2	chr19:58898538-58898761(+)$1	223	195	217	14.9674
""eeeeeqqqqqqqqeeeee44	chr19:40957173-40957386(-)$1	213	161	183	14.3273
ddd[cccqqqqqqqqcccdddd	chr16:30435187-30435443(-)$1	256	10	32	14.6339
fbb[cccqqqqqqqqccc]bb]	chr10:35859051-35859317(+)$1	266	161	183	15.0705
ccc[cccqqqqqqqqcccccc3	chr3:49397388-49397637(-)$1	249	120	142	15.9628
eeeee[aqqqqqqqqa]eeeee	chr17:42397335-42397577(-)$1	242	74	96	14.4753
=======qqqqqqqq=======	chr7:5270601-5270849(+)$1	248	220	242	16.1028
d"""cccqqqqqqqqccc333d	chr6:75949930-75950169(-)$1	239	45	67	15.7593
cccddddqqqqqqqqdddd]cc	chr12:57923981-57924208(-)$1	227	193	215	14.2520
bb!!cccqqqqqqqqccc4444	chr8:144898488-144898754(-)$1	266	20	42	15.5273
gggggggqqqqqqqqggggggg	chr22:43562852-43563083(-)$1	231	166	188	15.8659
eee[cccqqqqqqqqccc]eee	chr19:42365083-42365319(+)$1	236	183	205	15.5908
eeeee[aqqqqqqqqa]eeeee	chr3:150262121-150262386(-)$1	265	82	104	14.4753
iiiiiiiqqqqqqqqiiiiiii	chr11:1773961-1774204(-)$1	243	29	51	15.7213
f"""cccqqqqqqqqccc333f	chrX:69385980-69386269(+)$1	289	193	215	15.8770
iiiiiiiqqqqqqqqiiiiiii	chr5:150070774-150071031(-)$1	257	180	202	15.7213
[ccc!!aqqqqqqqqa22cccf	chr11:8704241-8704457(+)$1	216	139	161	14.5515
======aqqqqqqqqa]=====	chr3:196558784-196559098(+)$1	314	284	306	15.9788
gggggggqqqqqqqqggggggg	chr11:5269477-5269692(-)$1	215	122	144	15.8659
=======qqqqqqqq=======	chr16:89710842-89711157(-)$1	315	252	274	16.1028
gggggggqqqqqqqqggggggg	chr6:33377458-33377710(+)$1	252	155	177	15.8659
cc[ddddqqqqqqqqdddd]cc	chr12:56366284-56366536(+)$1	252	111	133	14.3897
eeeee[aqqqqqqqqa22eeee	chr19:11561390-11561718(+)$1	328	48	70	14.1296
:ffffffqqqqqqqqffffff:	chr9:37503486-37503736(+)$1	250	227	249	13.5648

#otherMatches

#Seq PSSM
GUAUAGAUUUAGUUCUCUUUAU	chr3:52741713-52742026(+)$1	313	221	243	15.5908
UGGGGGCAUUGAGUGGCGCAGA	chr7:2290460-2290836(+)$1	376	241	263	14.4552
AGGGGCACCAACGCCUGCCCCU	chr3:184052905-184053188(+)$1	283	59	81	15.8659
AGCUUCUGAUUUUAAAGAGGCA	chr11:57507792-57508043(+)$1	251	48	70	13.5648
CCAGAUAAAUAGAACUAUCUGC	chr1:43167620-43167853(+)$1	233	129	151	15.0695
UUGGAUCUUGAAUGUGGUCUCA	chr3:50367407-50367740(-)$1	333	113	135	14.1504
AAGCCCUGUGGCCAGAGGGAAA	chr7:158738406-158738673(+)$1	267	29	51	14.0973
CCUCCAGUAUUCCGUCUGUAGC	chr11:118915021-118915289(-)$1	268	108	130	14.3483
GGGUGGGUGGGGCCUCCCACUU	chr2:97525473-97525783(-)$1	310	56	78	15.8659
UGAACACCUUGCUUUGUGGUCA	chr9:86583887-86584147(-)$1	260	160	182	14.9247
GAGGUGUGGCAUGCAGCAUUUU	chr8:67834097-67834368(-)$1	271	16	38	15.8659
UGUGAGGGUAGAAAACCUCACC	chr20:30389255-30389540(+)$1	285	141	163	14.4753
CCUGCCCAACUCCAAGGACUGG	chr17:42268736-42269038(+)$1	302	250	272	14.2909
AAAGCGUUUUUAACUGCAACUU	chrX:154006968-154007181(-)$1	213	107	129	14.1720
UGGCAAAAAUGUCACUUUGCCU	chr15:66795718-66795939(-)$1	221	122	144	15.3309
AGUUAGCUUCAGAGUGUUAAUU	chrX:141290346-141290592(-)$1	246	118	140	14.2732
CUUGCUACCAGUAUUUAGAAGC	chr3:49397446-49397692(-)$1	246	175	197	15.9628
CUGGUGCCCGCGCUCGCUACCA	chr19:39923860-39924091(-)$1	231	141	163	13.8986
GGAGGAGACUGCACCCCACUGC	chr19:47341436-47341694(-)$1	258	129	151	13.7005
UAACAAGUCAAUGCUUUUGUUU	chr6:133135780-133135985(+)$1	205	63	85	13.5648
UCACAAAACGCUAAAUUUGUGU	chr10:28909712-28909947(+)$1	235	85	107	13.9260
AGAUGGGUCCCCUUUUUCUCUC	chrX:48750698-48750939(-)$1	241	88	110	15.9233
GGGAGGCUAAUGGUUGCUUUGC	chr7:98992161-98992411(+)$1	250	8	30	14.1028
CCAGGCCCAUGUCCCGGCCCUG	chrX:152915876-152916172(+)$1	296	137	159	14.4547
UCCUCCUAUAAUCCAGGGCGGA	chr19:56206640-56206877(+)$1	237	71	93	16.3426
GUAUAGGCCUCCAUCUUUGUGC	chr17:61909049-61909270(+)$1	221	121	143	15.7213
AAGGAGAUUUCUGUUUUUCUUU	chr17:73017043-73017331(+)$1	288	129	151	15.8659
GGAUGUCUUUACACUGACUUCA	chr1:6650961-6651215(-)$1	254	91	113	13.4378
GUGGGCCGGGGUCCAGUGCUUG	chr11:64084820-64085087(-)$1	267	206	228	15.7800
CUCUCCUCCGCCCACAGGGGUU	chr7:100849342-100849587(-)$1	245	216	238	14.4654
CAGGUCUAAAGAAAGGGACGUG	chr19:4039098-4039345(+)$1	247	100	122	13.5151
cagaggaagagggggUCCUAGG	chr18:19209053-19209276(+)$1	223	18	40	13.5804
GGGCAGUGCUGCAUGGCUGCCC	chr1:11734702-11734944(-)$1	242	172	194	15.7213
AUUGGGUCCAUGGUUGCCUCUU	chr19:49120983-49121231(-)$1	248	64	86	13.9378
UGGCAAAAAUGUCACUUUGCCU	chr15:66795764-66795968(-)$1	204	151	173	13.5648
gcggcgcgggaggaggcggagg	chr6:34664424-34664662(-)$1	238	15	37	16.2618
AUUGCUUUAAAUCUUAAGCAAU	chr15:48634495-48634755(+)$1	260	155	177	15.8659
CAGCCCCUCGUUCUUGGUCCUG	chr7:6442059-6442301(+)$1	242	24	46	14.3647
AGUGACUGUUCUGUGAGUGAUU	chr22:41924778-41925048(+)$1	270	199	221	15.9820
GCUCGGGGAGACCAACCCUGCA	chr17:49238419-49238643(+)$1	224	142	164	16.0616
AUUUUAACAAACGCAUUAAGAG	chr19:3976094-3976322(-)$1	228	86	108	15.1066
AAACUCCACAGUAUGGGACCCU	chr19:12907723-12907934(-)$1	211	155	177	16.1229
AGGCCUCCACUUCUUGAGGUCU	chr16:30435247-30435479(-)$1	232	30	52	15.8659
UAGGGACGGUUCAUGGUCUUUC	chr19:58898538-58898761(+)$1	223	195	217	14.9674
CCCUCCUGCCCUCUGGGGAGAu	chr19:40957173-40957386(-)$1	213	161	183	14.3273
AGGUCUGAGGCCCAGCAGCCUC	chr16:30435187-30435443(-)$1	256	10	32	14.6339
AAUGUUACUAUUUACUGAGGUA	chr10:35859051-35859317(+)$1	266	161	183	15.0705
CUUGCUACCAGUAUUUAGAAGC	chr3:49397388-49397637(-)$1	249	120	142	15.9628
GGCCUCCUUUCCACUGCAGGCU	chr17:42397335-42397577(-)$1	242	74	96	14.4753
UGCCAAAAUUAACUGUUUGGUG	chr7:5270601-5270849(+)$1	248	220	242	16.1028
UUUUUUUUUUUUUUUAAAUCUA	chr6:75949930-75950169(-)$1	239	45	67	15.7593
CCACUCUAUACUACAAGAGAUG	chr12:57923981-57924208(-)$1	227	193	215	14.2520
GUGUACGACCAGGAGCGUUUUG	chr8:144898488-144898754(-)$1	266	20	42	15.5273
GCCUUCCAGUGCAUGGGAGGGC	chr22:43562852-43563083(-)$1	231	166	188	15.8659
UCUACACGCGAGCUGGUGAGGA	chr19:42365083-42365319(+)$1	236	183	205	15.5908
UUGCUCUUUCUUUUUACAGCAA	chr3:150262121-150262386(-)$1	265	82	104	14.4753
ACCUUGUUGGAGCCUGCAGGGU	chr11:1773961-1774204(-)$1	243	29	51	15.7213
AUAUGGCUAUCAGCUGCUUUUU	chrX:69385980-69386269(+)$1	289	193	215	15.8770
GUGAUUUAACUCUUGAAGUCAC	chr5:150070774-150071031(-)$1	257	180	202	15.7213
UGCCUCCUCUUCCUUGCCGGCG	chr11:8704241-8704457(+)$1	216	139	161	14.5515
UUAGAACUUAGAAGUGUUUCUA	chr3:196558784-196559098(+)$1	314	284	306	15.9788
AGAGCUUUCAAGGAUAGGCUUU	chr11:5269477-5269692(-)$1	215	122	144	15.8659
AGAGGGGCCCAUUCACCUUUCU	chr16:89710842-89711157(-)$1	315	252	274	16.1028
AUCAAAUAAAGAAUAGUUUGGU	chr6:33377458-33377710(+)$1	252	155	177	15.8659
UGGGUGGAUUUGUUGCCAUGUG	chr12:56366284-56366536(+)$1	252	111	133	14.3897
UCUGGUCUUUCUCUUGCCCCAG	chr19:11561390-11561718(+)$1	328	48	70	14.1296
UUGCUGUGAUUAUAAAUGGCAG	chr9:37503486-37503736(+)$1	250	227	249	13.5648

#DB
(((.(((........))).)))	chr3:52741713-52742026(+)$1	1	221	243	15.5908
((((.((........)).)...	chr7:2290460-2290836(+)$1	1	241	263	14.4552
(((((((........)))))))	chr3:184052905-184053188(+)$1	1	59	81	15.8659
.((((((........)))))).	chr11:57507792-57508043(+)$1	1	48	70	13.5648
.((((((........)))))))	chr1:43167620-43167853(+)$1	1	129	151	15.0695
(((((((........)))).))	chr3:50367407-50367740(-)$1	1	113	135	14.1504
...((((........))))...	chr7:158738406-158738673(+)$1	1	29	51	14.0973
)((.(((........))).)).	chr11:118915021-118915289(-)$1	1	108	130	14.3483
(((((((........)))))))	chr2:97525473-97525783(-)$1	1	56	78	15.8659
(((.(((........))).)))	chr9:86583887-86584147(-)$1	1	160	182	14.9247
(((((((........)))))))	chr8:67834097-67834368(-)$1	1	16	38	15.8659
)((((((........)))))).	chr20:30389255-30389540(+)$1	1	141	163	14.4753
((.(.((........)).).))	chr17:42268736-42269038(+)$1	1	250	272	14.2909
((((.((........))..)))	chrX:154006968-154007181(-)$1	1	107	129	14.1720
.((((((........)))))).	chr15:66795718-66795939(-)$1	1	122	144	15.3309
)((((((........)))))).	chrX:141290346-141290592(-)$1	1	118	140	14.2732
(((.(((........)))))).	chr3:49397446-49397692(-)$1	1	175	197	15.9628
(((((((........)).))))	chr19:39923860-39924091(-)$1	1	141	163	13.8986
(.((..(........)..)).)	chr19:47341436-47341694(-)$1	1	129	151	13.7005
.((((((........)))))).	chr6:133135780-133135985(+)$1	1	63	85	13.5648
.((((((........)))))).	chr10:28909712-28909947(+)$1	1	85	107	13.9260
(((.(((........)))))).	chrX:48750698-48750939(-)$1	1	88	110	15.9233
(.(((((........))))).)	chr7:98992161-98992411(+)$1	1	8	30	14.1028
(((((((........)).))))	chrX:152915876-152916172(+)$1	1	137	159	14.4547
(((.(((........))).)))	chr19:56206640-56206877(+)$1	1	71	93	16.3426
(((((((........)))))))	chr17:61909049-61909270(+)$1	1	121	143	15.7213
(((((((........)))))))	chr17:73017043-73017331(+)$1	1	129	151	15.8659
.((.(((........))).)).	chr1:6650961-6651215(-)$1	1	91	113	13.4378
(((((((........).)))))	chr11:64084820-64085087(-)$1	1	206	228	15.7800
..(((((........)))))..	chr7:100849342-100849587(-)$1	1	216	238	14.4654
((.((((........)))).))	chr19:4039098-4039345(+)$1	1	100	122	13.5151
(..((((........))))..)	chr18:19209053-19209276(+)$1	1	18	40	13.5804
(((((((........)))))))	chr1:11734702-11734944(-)$1	1	172	194	15.7213
(..((((........))))..)	chr19:49120983-49121231(-)$1	1	64	86	13.9378
.((((((........)))))).	chr15:66795764-66795968(-)$1	1	151	173	13.5648
((..(((........)))...)	chr6:34664424-34664662(-)$1	1	15	37	16.2618
(((((((........)))))))	chr15:48634495-48634755(+)$1	1	155	177	15.8659
(((..((........))..)))	chr7:6442059-6442301(+)$1	1	24	46	14.3647
(((.(((........))).)))	chr22:41924778-41925048(+)$1	1	199	221	15.9820
((..(((........))).)))	chr17:49238419-49238643(+)$1	1	142	164	16.0616
.((((((........)))))))	chr19:3976094-3976322(-)$1	1	86	108	15.1066
(...(((........)))...)	chr19:12907723-12907934(-)$1	1	155	177	16.1229
(((((((........)))))))	chr16:30435247-30435479(-)$1	1	30	52	15.8659
(((((((........)))))).	chr19:58898538-58898761(+)$1	1	195	217	14.9674
..(((((........)))))..	chr19:40957173-40957386(-)$1	1	161	183	14.3273
(((.(((........)))))))	chr16:30435187-30435443(-)$1	1	10	32	14.6339
(((.(((........))).)).	chr10:35859051-35859317(+)$1	1	161	183	15.0705
(((.(((........)))))).	chr3:49397388-49397637(-)$1	1	120	142	15.9628
(((((.(........).)))))	chr17:42397335-42397577(-)$1	1	74	96	14.4753
(((((((........)))))))	chr7:5270601-5270849(+)$1	1	220	242	16.1028
(...(((........)))...)	chr6:75949930-75950169(-)$1	1	45	67	15.7593
(((((((........)))).))	chr12:57923981-57924208(-)$1	1	193	215	14.2520
((..(((........)))....	chr8:144898488-144898754(-)$1	1	20	42	15.5273
(((((((........)))))))	chr22:43562852-43563083(-)$1	1	166	188	15.8659
(((.(((........))).)))	chr19:42365083-42365319(+)$1	1	183	205	15.5908
(((((.(........).)))))	chr3:150262121-150262386(-)$1	1	82	104	14.4753
(((((((........)))))))	chr11:1773961-1774204(-)$1	1	29	51	15.7213
(...(((........)))...)	chrX:69385980-69386269(+)$1	1	193	215	15.8770
(((((((........)))))))	chr5:150070774-150071031(-)$1	1	180	202	15.7213
.(((..(........)..))))	chr11:8704241-8704457(+)$1	1	139	161	14.5515
(((((((........).)))))	chr3:196558784-196559098(+)$1	1	284	306	15.9788
(((((((........)))))))	chr11:5269477-5269692(-)$1	1	122	144	15.8659
(((((((........)))))))	chr16:89710842-89711157(-)$1	1	252	274	16.1028
(((((((........)))))))	chr6:33377458-33377710(+)$1	1	155	177	15.8659
((.((((........)))).))	chr12:56366284-56366536(+)$1	1	111	133	14.3897
(((((.(........)..))))	chr19:11561390-11561718(+)$1	1	48	70	14.1296
.((((((........)))))).	chr9:37503486-37503736(+)$1	1	227	249	13.5648

#PSSM
g : 0.17	c : 0.16	e : 0.11	f : 0.10	: : 0.07	d : 0.05	i : 0.05	b : 0.04	= : 0.04	! : 0.02	# : 0.02	[ : 0.02	h : 0.01	& : 0.01	a : 0.01	" : 0.01	
f : 0.23	g : 0.16	c : 0.13	e : 0.10	b : 0.07	i : 0.05	" : 0.05	= : 0.04	# : 0.02	d : 0.02	[ : 0.02	! : 0.02	
f : 0.23	g : 0.16	e : 0.13	c : 0.08	! : 0.07	b : 0.05	i : 0.05	[ : 0.04	" : 0.04	= : 0.04	d : 0.02	# : 0.01	
f : 0.19	[ : 0.17	g : 0.14	d : 0.10	e : 0.10	i : 0.05	! : 0.05	" : 0.04	= : 0.04	a : 0.02	b : 0.01	c : 0.01	
c : 0.26	f : 0.17	g : 0.14	d : 0.10	e : 0.10	i : 0.05	[ : 0.04	! : 0.04	= : 0.04	
c : 0.26	f : 0.16	g : 0.14	d : 0.10	b : 0.08	i : 0.05	e : 0.04	[ : 0.04	= : 0.04	! : 0.02	
c : 0.26	f : 0.16	g : 0.13	d : 0.10	a : 0.10	b : 0.08	i : 0.05	e : 0.04	= : 0.02	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.26	f : 0.16	g : 0.13	d : 0.10	a : 0.10	b : 0.08	i : 0.05	e : 0.04	= : 0.02	
c : 0.26	f : 0.16	g : 0.13	d : 0.10	b : 0.08	i : 0.05	] : 0.05	2 : 0.04	e : 0.04	= : 0.02	
c : 0.26	f : 0.16	g : 0.14	d : 0.10	2 : 0.07	e : 0.07	] : 0.05	i : 0.05	= : 0.04	
f : 0.17	g : 0.14	] : 0.13	d : 0.11	e : 0.10	c : 0.05	i : 0.05	3 : 0.05	= : 0.04	a : 0.02	2 : 0.02	b : 0.01	4 : 0.01	
f : 0.20	g : 0.16	e : 0.13	c : 0.08	] : 0.07	b : 0.05	i : 0.05	3 : 0.05	4 : 0.04	= : 0.04	d : 0.02	2 : 0.02	
f : 0.22	g : 0.16	c : 0.11	e : 0.10	3 : 0.07	4 : 0.05	b : 0.05	i : 0.05	= : 0.04	d : 0.02	] : 0.02	2 : 0.02	
g : 0.17	: : 0.11	e : 0.10	f : 0.08	c : 0.08	d : 0.07	4 : 0.05	i : 0.05	b : 0.04	] : 0.04	3 : 0.04	= : 0.04	5 : 0.01	a : 0.01	2 : 0.01	

#score	1004.2203718854394
#seq	67
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_transcript_m1_run1.txt

#BEAR
[dddd"""dddd[a[a[cccnnnnnccc]a]a]dddd333	chr12:132403400-132403639(+)$1	239	56	96	15.0845
===[ggggggg$$$$$cccmmmmccc4444ggggggg]==	chr9:139565004-139565227(+)$1	223	71	111	16.0152
ffffff"""ccc[bb[cccoooooocccbb]ccc333fff	chr3:195636232-195636487(-)$1	255	85	125	14.2177
==========[ccceeeeellleeeee333ccc]======	chr19:2271149-2271432(+)$1	283	105	145	14.7373
iiiia####dddd!!ddddnnnnndddd]dddd22a]iii	chr11:62312834-62313113(-)$1	279	152	192	13.4188
bb[dddd[a"""ddddbbccclllccc333bb]dddd333	chr7:77166720-77166992(+)$1	272	141	181	13.1377
a!!ggggggg[a[a!!cccnnnnnccc22a]a]ggggggg	chr17:4756541-4756814(+)$1	273	225	265	19.2032
ggggggg!!ccc!!eeeeeooooooeeeee22cccggggg	chr6:15248517-15248751(+)$1	234	50	90	13.8309
c!!ggggggg$$$$$ddddllldddd333ggggggg22cc	chr19:10406357-10406639(+)$1	282	219	259	15.8781
ffffeeeee"""ccc"""annnnna333ccc333eeeee:	chr1:206241105-206241317(-)$1	212	44	84	13.7090
3ccceeeee"""ddddcccnnnnnccc333dddd333eee	chr13:92003101-92003317(+)$1	216	169	209	15.1991
==[iiiiiiiii"""a!!ammmma22a22iiiiiiiii]=	chr17:56408504-56408716(-)$1	212	60	100	15.5865
eeee[eeeee[a!!eeeeellleeeee4444a]eeeee]e	chr19:7709146-7709406(+)$1	260	35	75	12.6911
cc[a[a[a[a[a[a[arrrrrrrrra]a]a]a]a]a]a]c	chr21:47731707-47731971(-)$1	264	79	119	15.1531
f!!a!!ccc####a[ddddnnnnndddd]a333ccc22a2	chr5:134260168-134260371(+)$1	203	102	142	17.6392
!!dddd[ggggggg!!aaooooooa]a22gggggggdddd	chr17:62501986-62502234(-)$1	248	106	146	14.8427
hhhhhhhhggggggg[cccmmmmccc333ggggggg4444	chr10:21823969-21824257(+)$1	288	189	229	13.5884
cccggggggg"""eeeeellleeeee333ggggggg]ccc	chr11:61644619-61644884(-)$1	265	1	41	13.7655
!ffffff[dddd####cccoooooocccdddd]ffffff]	chr5:93905169-93905395(-)$1	226	170	210	13.8756
ggggggg!!ccc[cccccclllccc]cccccc22gggggg	chr6:44215302-44215513(+)$1	211	11	51	13.7515
ccc####ccc[ccc"""bbmmmmbb4444ccc]ccc4444	chrM:1642-1846(+)$1	204	116	156	13.5796
f!!a!!ccc####a[ddddnnnnndddd]a333ccc22a2	chr5:134260171-134260398(+)$1	227	99	139	17.6392
[ccca[a[dddd"""a[bbnnnnnbb]a333dddd]a]a]	chr12:132403491-132403723(+)$1	232	77	117	15.6411
b:ggggggg"""cccrrrrrrrrrccc4444ggggggg==	chr19:802343-802595(+)$1	252	65	105	13.4684
d[a[bb####ccc!!ddddnnnnndddd333ccc>>>>>>	chr7:139056195-139056455(+)$1	260	111	151	14.1524
cccggggggg"""eeeeemmmmeeeee333ggggggg333	chr19:1409110-1409394(+)$1	284	42	82	14.2919
ccc[dddd[a[ccc[ccc[aooooooa]ccc]ccc]a]dd	chr22:20110857-20111110(+)$1	253	103	143	13.4746
ggg[ffffff"""ddddoooooodddd22ffffff]gggg	chr1:1561090-1561346(+)$1	256	48	88	13.3716
[dddd"""dddd[a[a[cccnnnnnccc]a]a]dddd333	chr12:132403439-132403691(+)$1	252	17	57	15.0845
=========%%%%%%cccooooooccc22===========	chr19:18548132-18548412(-)$1	280	89	129	16.0325
iiii[ggggggg[ffffffnnnnnffffff22ggggggg4	chr12:109124510-109124804(-)$1	294	196	236	13.4546
d[a[ffffff%%%%%%cccnnnnnccc333ffffff]a]d	chr22:20110416-20110653(+)$1	237	61	101	14.0388
f!!a!!ccc####a[ddddnnnnndddd]a333ccc22a2	chr5:134260125-134260368(+)$1	243	145	185	17.6392
cc!!ccc!!ccc[bb[cccnnnnncccbb]ccc22ccc22	chr7:1894196-1894484(-)$1	288	198	238	14.4600
gggggg[ccc[a[a[a[arrrrrrrrra]a]a]a22ccc]	chr2:97560156-97560372(-)$1	216	116	156	14.5678
a[eeeee[dddd[bb[cccooooooccc22bb]dddd]ee	chrM:14218-14422(-)$1	204	47	87	13.6181
bbccc!!dddd[a"""cccooooooccc]a]dddd22ccc	chr21:45734112-45734376(+)$1	264	156	196	15.2404
b[ccc!!==========[a!!ammmma22a]=========	chr13:92000163-92000434(+)$1	271	163	203	13.2653
####ggggggg!!eeeeeooooooeeeeeggggggg22bb	chr1:109289274-109289508(+)$1	234	15	55	13.5983
:ddddeeeee$$$$$cccooooooccc4444eeeee]ddd	chr1:173835344-173835573(-)$1	229	87	127	13.8941
a####bb[a!!bb!!cccooooooccc22bb22a]bb22a	chr17:55333777-55334021(+)$1	244	97	137	14.8775
d[iiiiiiiii####cccooooooccc333iiiiiiiii]	chr14:70238180-70238426(+)$1	246	166	206	19.2348
bb[ccc[ccc$$$$$ddddllldddd333ccc]ccc]bb]	chr22:20110513-20110783(+)$1	270	205	245	14.5285
d!!ffffff!!a[a[cccnnnnnccc]a]affffff22dd	chr19:798641-798883(+)$1	242	31	71	14.7472
ffffff"""ccc[bb[cccoooooocccbb]ccc333fff	chr3:195636311-195636575(-)$1	264	173	213	14.2177
ff[ccc[eeeee####cccnnnnnccc666666eeeee]c	chr3:41241185-41241459(+)$1	274	189	229	13.9129
cc[ggggggg!!bb!!cccnnnnnccc22bb]ggggggg]	chr16:448822-449048(+)$1	226	76	116	17.3471
$$a[dddd[dddd[a"""aooooooa333a]dddd]dddd	chr22:37623352-37623603(-)$1	251	44	84	13.7714
iiii"""a[bb####a[cccmmmmccc]a4444bb]a444	chr6:86351502-86351770(-)$1	268	126	166	14.8442
cc####bb[==========nnnnn==========]bb444	chr10:133789973-133790239(-)$1	266	82	122	14.9258
cc[dddd[bb"""a[a[bbnnnnnbb]a]a333bb]dddd	chr16:89555785-89556017(-)$1	232	163	203	14.8060
d[iiiiiiiii####cccooooooccc333iiiiiiiii]	chr14:70238226-70238465(+)$1	239	120	160	19.2348
"""a[ggggggg!!a[ccclllccc]a22ggggggg]a22	chr10:111986973-111987263(+)$1	290	187	227	16.0937
eeee!!a[eeeeebb[cccoooooocccbb333eeeeea2	chr10:51030303-51030517(-)$1	214	73	113	13.3430
fff============[cccnnnnnccc============:	chr17:76124235-76124504(-)$1	269	143	183	16.0851
iiiiiiiii!!a!!ddddnnnnndddd22a]iiiiiiiii	chr19:1104347-1104709(+)$1	362	207	247	16.3910

#otherMatches

#Seq PSSM
guguggggugcaggguguguggggugcagggugugugggg	chr12:132403400-132403639(+)$1	239	56	96	15.0845
CUUUUGGUACGCGCUGUGACACUUCAAACUCGUACCGUGA	chr9:139565004-139565227(+)$1	223	71	111	16.0152
GGGGGCAAGCGAGUGCGCUGGGCCGAGCCGGUCGGGGGCC	chr3:195636232-195636487(-)$1	255	85	125	14.2177
GCCCCUGCCUGGGCGGGGCGGGGUCUUUUGGCCGAGGCAG	chr19:2271149-2271432(+)$1	283	105	145	14.7373
GGGCCGUCCCUGGCAGGGCUGGUCGCCCCCCAGCAGUGCC	chr11:62312834-62313113(-)$1	279	152	192	13.4188
GGAUGGAGCAAGUGGAGAUCCUGAGGAAAUUCAUCCAGAG	chr7:77166720-77166992(+)$1	272	141	181	13.1377
ugguuggugggggagugugguUGUUGCUGUGUGCCAUCGG	chr17:4756541-4756814(+)$1	273	225	265	19.2032
ucuacccgggccggcuugcaggcgggcaggagggcgggug	chr6:15248517-15248751(+)$1	234	50	90	13.8309
UGACCCAAUUCACAAUCCACUGUGGGGAAGAUUGGGGAGG	chr19:10406357-10406639(+)$1	282	219	259	15.8781
GGAAAUGUCCCUGCUCUUCUCUUUGUAAAGCCAUGGCAUC	chr1:206241105-206241317(-)$1	212	44	84	13.7090
AUUGUGUCGAUGUAGAAUCUGCCUGGUCUAUCUGAUGUGA	chr13:92003101-92003317(+)$1	216	169	209	15.1991
AGAAAGCACUACUAACAGCACUGGAGGGUGUAGUGUUUCC	chr17:56408504-56408716(-)$1	212	60	100	15.5865
UGGGACCUGGGUGAGGGGUGGAGCCUUGGAGAGCUGGGAC	chr19:7709146-7709406(+)$1	260	35	75	12.6911
auggguggguggguggguggauggauggguggguggaugg	chr21:47731707-47731971(-)$1	264	79	119	15.1531
AGUAGUUACUGGUUGAACAUUGUUUGUUGGUGUGUAUAUU	chr5:134260168-134260371(+)$1	203	102	142	17.6392
GGCCGGCGGGGGCUUUGCGGCUUGGACUUGGCCUUUCCGG	chr17:62501986-62502234(-)$1	248	106	146	14.8427
GCCUGUCUGCCGCAGUGUUUGGAGACUUCCUGUGGCGUGG	chr10:21823969-21824257(+)$1	288	189	229	13.5884
UGUGCGUGCAACAGUGUGGCUCACAUGUAUGCGUGCAACA	chr11:61644619-61644884(-)$1	265	1	41	13.7655
AUACAACGAUGGUUUUUCAUAUCAUUGGUCGUGGUUGUAG	chr5:93905169-93905395(-)$1	226	170	210	13.8756
GGGUGACUCAGCACGGCCUUGUGGGACUGGCUUUGUCACC	chr6:44215302-44215513(+)$1	211	11	51	13.7515
AUUGAAACCUGGCGCAAUAGAUAUAGUACCGCAAGGGAAA	chrM:1642-1846(+)$1	204	116	156	13.5796
AGUAGUUACUGGUUGAACAUUGUUUGUUGGUGUGUAUAUU	chr5:134260171-134260398(+)$1	227	99	139	17.6392
gugggguguacgguguguggggugcaggguguguggggug	chr12:132403491-132403723(+)$1	232	77	117	15.6411
GGCAGCUCCUUGACCAGGCAUGGGGGUGUGUGGAGCUGGG	chr19:802343-802595(+)$1	252	65	105	13.4684
GGGGGAGGGGGCGGAUAUUGGGAAGAUAGCAUGCAAAGUA	chr7:139056195-139056455(+)$1	260	111	151	14.1524
CUCCAGGCACUUUGACUUGGCAGGGUCCGUGUGCCUGUGU	chr19:1409110-1409394(+)$1	284	42	82	14.2919
gguguguggugucuggggggguuugguguCUGAGGGGGUG	chr22:20110857-20111110(+)$1	253	103	143	13.4746
CACGAGUCCCCAGCCCUGAAGGAAGGGGAGGGACUGGUGG	chr1:1561090-1561346(+)$1	256	48	88	13.3716
guguggggugcaggguguguggggugcagggugugugggg	chr12:132403439-132403691(+)$1	252	17	57	15.0845
UGCGGGACCAGGGGGGCUGUAGGGGGUGGGGUUCCGCGGG	chr19:18548132-18548412(-)$1	280	89	129	16.0325
UCUGGGCCCUGCAGAUCUCGGUUGGGGGUCAGGCGGGGCG	chr12:109124510-109124804(-)$1	294	196	236	13.4546
gguguuuggggguguguaguuggucuggugucuggggggu	chr22:20110416-20110653(+)$1	237	61	101	14.0388
AGUAGUUACUGGUUGAACAUUGUUUGUUGGUGUGUAUAUU	chr5:134260125-134260368(+)$1	243	145	185	17.6392
gaaaccgaauccccacugugaggggcaugaggaggcgggg	chr7:1894196-1894484(-)$1	288	198	238	14.4600
CUGUGUGUAUgugggugggugggugaaugggugggugugg	chr2:97560156-97560372(-)$1	216	116	156	14.5678
AGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGUG	chrM:14218-14422(-)$1	204	47	87	13.6181
ACGGCAGGGCUGUGGGGGUGGCGAGGCCAGGAGCUGGGCC	chr21:45734112-45734376(+)$1	264	156	196	15.2404
cggcguggccggggcgggUCUCGGCCGUUGGCCGCCCCGG	chr13:92000163-92000434(+)$1	271	163	203	13.2653
AACGCCGCUUCUGCGGCCAAAGUAGGUUGGGAGUGGAAGG	chr1:109289274-109289508(+)$1	234	15	55	13.5983
UUCAGCAGAUUUAAUCAUGAAGAGAUGUACUAUCUGUCUG	chr1:173835344-173835573(-)$1	229	87	127	13.8941
CGGGGGGGUGUGCGAGGCAGCGGGGCUGAGCUAAGCCGAG	chr17:55333777-55334021(+)$1	244	97	137	14.8775
GGUUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAAG	chr14:70238180-70238426(+)$1	246	166	206	19.2348
gugucuggggagguguacaguguguggugucugGGGGGCG	chr22:20110513-20110783(+)$1	270	205	245	14.5285
CGAGUCACUUAGGGCCUCGCCGGGAGUUGCAGUGGCCGGG	chr19:798641-798883(+)$1	242	31	71	14.7472
GGGGGCAAGCGAGUGCGCUGGGCCGAGCCGGUCGGGGGCC	chr3:195636311-195636575(-)$1	264	173	213	14.2177
CUCUGGGGCCCUGGGGGCAUCGCUUGCGGGGAGGGGGCGC	chr3:41241185-41241459(+)$1	274	189	229	13.9129
CUGGUGACCCCUGGGCUCUGGCUGGGAAACCCGGGUCGUG	chr16:448822-449048(+)$1	226	76	116	17.3471
gguguauggcaugggaggcgugggagggauguauggcgug	chr22:37623352-37623603(-)$1	251	44	84	13.7714
AGAAAUUGGGUGGUGGGAAGGUGGCUUGUAUGAGCGCUUU	chr6:86351502-86351770(-)$1	268	126	166	14.8442
aagugggagucugguugcagagagugugguugggguuagg	chr10:133789973-133790239(-)$1	266	82	122	14.9258
CAGCCGUGUGGGGGGUGUUAGGGGGAGGGUAGGCGGGCGG	chr16:89555785-89556017(-)$1	232	163	203	14.8060
GGUUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAAG	chr14:70238226-70238465(+)$1	239	120	160	19.2348
gagggugcgcacggaggguggggCUGUGGGUGUGCGGCGA	chr10:111986973-111987263(+)$1	290	187	227	16.0937
auuaagcacuucuugagaaaucuaguuccauuuaggggga	chr10:51030303-51030517(-)$1	214	73	113	13.3430
GGUGGCCCCAGAGUUGCAGCCGCUCUGGGCUCUGGGGCCA	chr17:76124235-76124504(-)$1	269	143	183	16.0851
GGGGGCGCGGAGGGCUGGAAAUCCCGGAUCAcgcgccccc	chr19:1104347-1104709(+)$1	362	207	247	16.3910

#DB
.((((...((((.(.(.(((.....))).).).))))...	chr12:132403400-132403639(+)$1	1	56	96	15.0845
(((.(((((((.....(((....)))....))))))).))	chr9:139565004-139565227(+)$1	1	71	111	16.0152
((((((...(((.((.(((......))))).)))...)))	chr3:195636232-195636487(-)$1	1	85	125	14.2177
((((((((((.((((((((...)))))...))).))))))	chr19:2271149-2271432(+)$1	1	105	145	14.7373
(((((....((((..((((.....)))).))))..).)))	chr11:62312834-62313113(-)$1	1	152	192	13.4188
((.((((.(...(((((((((...)))...)).))))...	chr7:77166720-77166992(+)$1	1	141	181	13.1377
(..(((((((.(.(..(((.....)))..).).)))))))	chr17:4756541-4756814(+)$1	1	225	265	19.2032
(((((((..(((..(((((......)))))..))))))))	chr6:15248517-15248751(+)$1	1	50	90	13.8309
(..(((((((.....((((...))))...)))))))..))	chr19:10406357-10406639(+)$1	1	219	259	15.8781
))))(((((...(((...(.....)...)))...))))).	chr1:206241105-206241317(-)$1	1	44	84	13.7090
.)))(((((...(((((((.....)))...))))...)))	chr13:92003101-92003317(+)$1	1	169	209	15.1991
((.(((((((((...(..(....)..)..))))))))).)	chr17:56408504-56408716(-)$1	1	60	100	15.5865
((((.(((((.(..(((((...)))))....).))))).)	chr19:7709146-7709406(+)$1	1	35	75	12.6911
((.(.(.(.(.(.(.(.........).).).).).).).)	chr21:47731707-47731971(-)$1	1	79	119	15.1531
(..(..(((....(.((((.....)))).)...)))..).	chr5:134260168-134260371(+)$1	1	102	142	17.6392
..((((.(((((((..((......).)..)))))))))))	chr17:62501986-62502234(-)$1	1	106	146	14.8427
(((((((((((((((.(((....)))...)))))))....	chr10:21823969-21824257(+)$1	1	189	229	13.5884
((((((((((...(((((...)))))...))))))).)))	chr11:61644619-61644884(-)$1	1	1	41	13.7655
.((((((.((((....(((......))))))).)))))).	chr5:93905169-93905395(-)$1	1	170	210	13.8756
(((((((..(((.((((((...))).))))))..))))))	chr6:44215302-44215513(+)$1	1	11	51	13.7515
(((....(((.(((...((....))....))).)))....	chrM:1642-1846(+)$1	1	116	156	13.5796
(..(..(((....(.((((.....)))).)...)))..).	chr5:134260171-134260398(+)$1	1	99	139	17.6392
.((((.(.((((...(.((.....)).)...)))).).).	chr12:132403491-132403723(+)$1	1	77	117	15.6411
).(((((((...(((.........)))....)))))))((	chr19:802343-802595(+)$1	1	65	105	13.4684
(.(.((....(((..((((.....))))...)))......	chr7:139056195-139056455(+)$1	1	111	151	14.1524
((((((((((...(((((....)))))...)))))))...	chr19:1409110-1409394(+)$1	1	42	82	14.2919
(((.((((.(.(((.(((.(......).))).))).).))	chr22:20110857-20111110(+)$1	1	103	143	13.4746
(((.((((((...((((......))))..)))))).))))	chr1:1561090-1561346(+)$1	1	48	88	13.3716
.((((...((((.(.(.(((.....))).).).))))...	chr12:132403439-132403691(+)$1	1	17	57	15.0845
(((((((((......(((......)))..)))))))))))	chr19:18548132-18548412(-)$1	1	89	129	16.0325
((((.(((((((.((((((.....))))))..))))))).	chr12:109124510-109124804(-)$1	1	196	236	13.4546
(.(.((((((......(((.....)))...)))))).).)	chr22:20110416-20110653(+)$1	1	61	101	14.0388
(..(..(((....(.((((.....)))).)...)))..).	chr5:134260125-134260368(+)$1	1	145	185	17.6392
((..(((..(((.((.(((.....))))).)))..)))..	chr7:1894196-1894484(-)$1	1	198	238	14.4600
((((((.(((.(.(.(.(.........).).).)..))).	chr2:97560156-97560372(-)$1	1	116	156	14.5678
(.(((((.((((.((.(((......)))..)).)))).))	chrM:14218-14422(-)$1	1	47	87	13.6181
(((((..((((.(...(((......))).).))))..)))	chr21:45734112-45734376(+)$1	1	156	196	15.2404
(.(((..((((((((((.(..(....)..).)))))))))	chr13:92000163-92000434(+)$1	1	163	203	13.2653
....(((((((..(((((......))))))))))))..))	chr1:109289274-109289508(+)$1	1	15	55	13.5983
.(((((((((.....(((......)))....))))).)))	chr1:173835344-173835573(-)$1	1	87	127	13.8941
(....((.(..((..(((......)))..))..).))..)	chr17:55333777-55334021(+)$1	1	97	137	14.8775
(.(((((((((....(((......)))...))))))))).	chr14:70238180-70238426(+)$1	1	166	206	19.2348
((.(((.(((.....((((...))))...))).))).)).	chr22:20110513-20110783(+)$1	1	205	245	14.5285
(..((((((..(.(.(((.....))).).)))))))..))	chr19:798641-798883(+)$1	1	31	71	14.7472
((((((...(((.((.(((......))))).)))...)))	chr3:195636311-195636575(-)$1	1	173	213	14.2177
((.(((.(((((....(((.....)))......))))).)	chr3:41241185-41241459(+)$1	1	189	229	13.9129
((.(((((((..((..(((.....)))..)).))))))).	chr16:448822-449048(+)$1	1	76	116	17.3471
..(.((((.((((.(...(......)...).)))).))))	chr22:37623352-37623603(-)$1	1	44	84	13.7714
((((...(.((....(.(((....))).)....)).)...	chr6:86351502-86351770(-)$1	1	126	166	14.8442
((....((.((((((((((.....)))))))))).))...	chr10:133789973-133790239(-)$1	1	82	122	14.9258
((.((((.((...(.(.((.....)).).)...)).))))	chr16:89555785-89556017(-)$1	1	163	203	14.8060
(.(((((((((....(((......)))...))))))))).	chr14:70238226-70238465(+)$1	1	120	160	19.2348
...(.(((((((..(.(((...))).)..))))))).)..	chr10:111986973-111987263(+)$1	1	187	227	16.0937
((((..(.(((((((.(((......)))))...)))))).	chr10:51030303-51030517(-)$1	1	73	113	13.3430
)))((((((((((((.(((.....))))))))))))))).	chr17:76124235-76124504(-)$1	1	143	183	16.0851
(((((((((..(..((((.....))))..).)))))))))	chr19:1104347-1104709(+)$1	1	207	247	16.3910

#PSSM
c : 0.17	f : 0.14	b : 0.08	d : 0.08	= : 0.07	i : 0.07	g : 0.07	[ : 0.05	a : 0.05	e : 0.03	! : 0.03	3 : 0.01	h : 0.01	# : 0.01	: : 0.01	$ : 0.01	" : 0.01	
c : 0.19	! : 0.12	f : 0.10	[ : 0.10	= : 0.07	i : 0.07	g : 0.07	d : 0.05	b : 0.05	e : 0.03	# : 0.03	h : 0.01	: : 0.01	$ : 0.01	" : 0.01	
c : 0.14	[ : 0.12	! : 0.12	i : 0.10	f : 0.08	g : 0.08	d : 0.07	= : 0.05	e : 0.05	a : 0.05	# : 0.05	h : 0.01	" : 0.01	
g : 0.16	i : 0.12	d : 0.10	[ : 0.10	c : 0.10	f : 0.08	a : 0.08	# : 0.07	= : 0.05	e : 0.05	h : 0.01	! : 0.01	
g : 0.19	d : 0.14	f : 0.10	c : 0.08	i : 0.07	[ : 0.07	! : 0.07	= : 0.05	e : 0.05	# : 0.05	a : 0.03	h : 0.01	b : 0.01	" : 0.01	
g : 0.23	f : 0.10	! : 0.10	d : 0.08	e : 0.08	i : 0.07	" : 0.05	= : 0.05	# : 0.05	c : 0.05	b : 0.03	a : 0.01	h : 0.01	[ : 0.01	
g : 0.21	" : 0.08	e : 0.08	[ : 0.08	d : 0.07	i : 0.07	c : 0.07	f : 0.07	= : 0.05	# : 0.05	a : 0.03	! : 0.03	b : 0.03	h : 0.01	
g : 0.19	[ : 0.12	c : 0.10	e : 0.08	" : 0.07	= : 0.07	i : 0.07	! : 0.05	d : 0.05	f : 0.05	# : 0.03	a : 0.03	h : 0.01	b : 0.01	
g : 0.21	d : 0.10	e : 0.10	c : 0.10	[ : 0.08	= : 0.07	i : 0.07	! : 0.05	f : 0.05	" : 0.03	# : 0.03	a : 0.03	b : 0.01	
g : 0.19	d : 0.14	c : 0.14	= : 0.07	" : 0.07	e : 0.07	# : 0.07	i : 0.05	! : 0.05	a : 0.03	f : 0.03	b : 0.03	% : 0.01	
d : 0.14	" : 0.14	[ : 0.12	g : 0.10	c : 0.10	! : 0.07	$ : 0.05	i : 0.05	# : 0.05	= : 0.05	% : 0.03	e : 0.03	b : 0.01	
c : 0.16	" : 0.14	d : 0.12	a : 0.10	# : 0.10	$ : 0.07	g : 0.07	= : 0.05	% : 0.03	! : 0.03	e : 0.03	i : 0.01	[ : 0.01	b : 0.01	
[ : 0.21	# : 0.14	c : 0.10	" : 0.10	! : 0.08	$ : 0.07	d : 0.07	= : 0.05	g : 0.03	% : 0.03	b : 0.03	a : 0.01	e : 0.01	
a : 0.17	! : 0.12	b : 0.10	c : 0.10	# : 0.08	$ : 0.07	d : 0.05	" : 0.05	e : 0.05	= : 0.05	g : 0.03	% : 0.03	f : 0.01	[ : 0.01	
[ : 0.17	e : 0.10	! : 0.10	b : 0.08	# : 0.08	$ : 0.07	d : 0.07	" : 0.07	c : 0.05	= : 0.05	% : 0.03	a : 0.03	g : 0.01	f : 0.01	
d : 0.19	a : 0.14	[ : 0.14	c : 0.14	e : 0.10	" : 0.07	! : 0.05	# : 0.03	= : 0.03	$ : 0.01	r : 0.01	f : 0.01	% : 0.01	
c : 0.42	d : 0.16	[ : 0.10	e : 0.10	" : 0.05	r : 0.03	= : 0.03	b : 0.01	! : 0.01	a : 0.01	f : 0.01	
c : 0.48	d : 0.14	e : 0.10	b : 0.07	" : 0.03	r : 0.03	a : 0.03	! : 0.01	o : 0.01	f : 0.01	[ : 0.01	= : 0.01	
c : 0.37	o : 0.14	d : 0.12	a : 0.07	e : 0.05	r : 0.05	b : 0.05	n : 0.03	l : 0.01	m : 0.01	[ : 0.01	f : 0.01	= : 0.01	
n : 0.33	o : 0.28	l : 0.12	m : 0.08	c : 0.07	r : 0.05	a : 0.01	! : 0.01	
n : 0.37	o : 0.30	l : 0.12	m : 0.10	r : 0.05	c : 0.01	! : 0.01	
n : 0.37	o : 0.30	l : 0.12	m : 0.10	r : 0.05	e : 0.01	a : 0.01	
n : 0.37	o : 0.30	m : 0.10	e : 0.07	r : 0.05	d : 0.03	c : 0.03	l : 0.01	
n : 0.33	o : 0.28	c : 0.08	e : 0.07	d : 0.07	r : 0.05	m : 0.03	l : 0.01	a : 0.01	b : 0.01	
c : 0.35	o : 0.16	d : 0.16	e : 0.08	b : 0.05	n : 0.03	a : 0.03	r : 0.03	2 : 0.01	f : 0.01	m : 0.01	= : 0.01	
c : 0.46	d : 0.16	e : 0.10	] : 0.05	a : 0.03	b : 0.03	3 : 0.01	2 : 0.01	4 : 0.01	o : 0.01	f : 0.01	r : 0.01	m : 0.01	= : 0.01	
c : 0.42	d : 0.12	3 : 0.10	e : 0.08	a : 0.08	] : 0.07	4 : 0.03	f : 0.01	r : 0.01	= : 0.01	
3 : 0.23	2 : 0.17	c : 0.16	4 : 0.08	d : 0.08	a : 0.08	e : 0.03	] : 0.03	= : 0.03	f : 0.01	b : 0.01	6 : 0.01	
3 : 0.24	] : 0.19	2 : 0.19	4 : 0.08	b : 0.07	c : 0.05	e : 0.03	= : 0.03	d : 0.01	f : 0.01	6 : 0.01	a : 0.01	
a : 0.24	3 : 0.16	g : 0.10	4 : 0.08	b : 0.08	c : 0.08	= : 0.05	d : 0.03	f : 0.03	e : 0.01	i : 0.01	] : 0.01	2 : 0.01	6 : 0.01	
] : 0.19	g : 0.14	c : 0.12	3 : 0.12	b : 0.07	4 : 0.07	d : 0.05	i : 0.05	f : 0.05	= : 0.05	2 : 0.03	6 : 0.01	
g : 0.16	c : 0.14	a : 0.10	d : 0.10	3 : 0.10	i : 0.07	= : 0.07	2 : 0.05	f : 0.05	b : 0.03	] : 0.03	e : 0.01	6 : 0.01	4 : 0.01	
] : 0.19	g : 0.19	c : 0.12	3 : 0.10	d : 0.08	i : 0.07	= : 0.07	f : 0.05	2 : 0.03	e : 0.01	6 : 0.01	4 : 0.01	
g : 0.21	c : 0.17	d : 0.14	i : 0.07	e : 0.07	f : 0.07	= : 0.07	2 : 0.05	a : 0.05	b : 0.03	] : 0.01	3 : 0.01	
g : 0.23	d : 0.12	c : 0.12	e : 0.08	= : 0.07	i : 0.07	f : 0.07	3 : 0.05	2 : 0.05	] : 0.05	b : 0.03	> : 0.01	
g : 0.24	c : 0.10	] : 0.10	e : 0.08	d : 0.07	= : 0.07	i : 0.07	3 : 0.05	f : 0.05	a : 0.03	2 : 0.03	b : 0.03	> : 0.01	
g : 0.16	d : 0.12	] : 0.12	2 : 0.12	= : 0.07	e : 0.07	i : 0.07	3 : 0.05	a : 0.05	4 : 0.03	c : 0.03	b : 0.03	f : 0.01	> : 0.01	
g : 0.12	2 : 0.12	i : 0.08	e : 0.08	3 : 0.07	] : 0.07	= : 0.07	d : 0.07	4 : 0.07	c : 0.07	f : 0.05	a : 0.05	> : 0.01	b : 0.01	
= : 0.10	g : 0.10	d : 0.10	] : 0.08	a : 0.08	3 : 0.07	i : 0.07	c : 0.07	4 : 0.07	f : 0.05	e : 0.05	2 : 0.05	b : 0.03	> : 0.01	
d : 0.12	] : 0.12	= : 0.10	2 : 0.10	c : 0.08	4 : 0.08	3 : 0.07	g : 0.07	e : 0.05	f : 0.03	i : 0.03	: : 0.03	> : 0.01	b : 0.01	a : 0.01	

#score	834.2011908441636
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_transcript_m2_run1.txt

#BEAR
[bb[ccc!!cccmmmmccc333ccc]b	chr7:4762608-4762896(+)$1	288	243	270	12.8907
eeee[gggggggmmmmggggggg]eee	chr2:153574992-153575234(+)$1	242	28	55	10.1598
ffff[bb!!cccmmmmccc22bb]fff	chr12:132386130-132386380(+)$1	250	19	46	10.4878
dddiiiiiiiiimmmmiiiiiiiii]d	chr20:1164867-1165145(-)$1	278	199	226	10.8087
g[dddd[eeeeemmmmeeeee]dddd2	chr20:35490696-35490958(-)$1	262	202	229	9.3227
ccc[bb[a[cccmmmmccc22a]bb33	chr2:242597259-242597550(+)$1	291	256	283	11.6040
ddd!!a[ddddmmmmdddd]a22dddd	chr10:43891619-43891850(-)$1	231	106	133	9.4096
gggggg!!a[bbmmmmbb]a333gggg	chr4:111118372-111118622(-)$1	250	10	37	10.4537
[dddd[ccccccmmmmccc333ccc]d	chr20:62580901-62581167(-)$1	266	117	144	13.3053
ee!!dddd!!ccclllccc333dddd2	chr19:1015691-1015956(-)$1	265	3	30	10.8223
ccc"""eeeeemmmmeeeee4444ccc	chr12:31478402-31478627(-)$1	225	142	169	8.5889
:dddd[bb[cccmmmmccc]bb]dddd	chr17:80519361-80519644(+)$1	283	240	267	10.1822
gggg[ccc[cccooooooccc]ccc]g	chr17:7476912-7477183(+)$1	271	27	54	10.5354
fffff[bb[cccmmmmccc]bb]ffff	chr18:3450210-3450452(+)$1	242	27	54	10.1590
hhhhccca[cccmmmmccc]a]ccc:f	chr19:46172497-46172779(+)$1	282	106	133	11.2355
dd:ccc"""cccmmmmccc333ccc::	chr7:919023-919292(+)$1	269	201	228	10.6202
gg####ffffffmmmmffffffggggg	chr16:50306473-50306699(+)$1	226	151	178	9.1457
dd[a!!ccc[ccclllccc]ccc22a]	chr12:98910037-98910276(+)$1	239	31	58	10.0041
[eeeee[bbcccmmmmccc333bb]ee	chr4:1805232-1805475(+)$1	243	50	77	11.3560
feeeee[a[cccmmmmccc]a]eeeee	chr22:50629069-50629318(+)$1	249	153	180	12.0235
iiiiii"""cccmmmmccc333iiiii	chr16:89360571-89360818(-)$1	247	9	36	13.3037
eeee!!ffffffmmmmffffff]eeee	chr10:126805885-126806154(-)$1	269	162	189	9.0894
c[dddd[a[cccmmmmccc]a]ddddc	chr4:76597780-76598050(-)$1	270	114	141	12.5513
[ccc[ccc[cccmmmmccc]ccccccd	chr16:16043787-16044048(+)$1	261	136	163	12.7805
dd[a[ccc[cccnnnnncccccc]a]d	chr19:807044-807316(+)$1	272	41	68	9.2937
dd"""ccc[cccnnnnnccc]cccddd	chr16:21530638-21530883(-)$1	245	149	176	9.4237
dd[a[gggggggmmmmggggggg22a]	chr11:32915110-32915390(+)$1	280	133	160	10.1943
eee[ccc!!cccooooooccc]cccee	chr2:97534339-97534592(-)$1	253	221	248	10.2544
================ccc333fffff	chr6:12013009-12013303(+)$1	294	129	156	8.8355
!!ccc[ccc[bbmmmmbb]cccccc]e	chr19:42756350-42756605(-)$1	255	111	138	9.8561
ggggggg[ddddmmmmddddggggggg	chr12:123871942-123872171(+)$1	229	195	222	9.6534
ffff####bb[ammmmabb4444ffff	chr17:76116525-76116791(-)$1	266	17	44	9.4197
dddddddddddmmmmdddd333dddd2	chr9:94606946-94607192(-)$1	246	37	64	9.4873
e!!ddddeeeeemmmmeeeee333ddd	chr9:136020213-136020499(-)$1	286	29	56	9.4349
h!!dddd!!cccoooooocccdddd22	chr16:21520707-21520994(-)$1	287	151	178	9.1861
dddd[ccc[bboooooobb]cccdddd	chr22:50049780-50050022(-)$1	242	87	114	8.8034
[dddd[ccccccmmmmccc]ccc]ddd	chr19:863083-863375(+)$1	292	227	254	12.2198
[dddd!!a[cccmmmmccca22dddd]	chr4:895338-895570(-)$1	232	47	74	12.7212
===========oooooo==========	chr20:32255392-32255647(-)$1	255	175	202	9.5361
=======[acccmmmmccc]a]=====	chr22:46977885-46978145(+)$1	260	199	226	12.8380
fffbb[a!!cccmmmmccc22a22bb]	chr19:13111569-13111824(+)$1	255	149	176	10.7384
eee!!ccc[cccmmmmccc]ccc22ee	chr20:61842164-61842414(-)$1	250	177	204	12.3093
dd[eeeee[cccmmmmccc]eeeee]d	chr5:179050305-179050538(-)$1	233	117	144	11.3750
fffiiiiiiiiimmmmiiiiiiiii44	chr22:50037506-50037767(-)$1	261	160	187	10.4344
cc"""ccc[ccclllcccccc22ccc]	chr17:76124019-76124313(-)$1	294	194	221	10.6379
d[eeeee!!cccmmmmccc]eeeee]d	chr5:139030280-139030519(+)$1	239	208	235	11.4754
!bb!!ddddcccmmmmccc]dddd333	chr3:195677773-195678031(-)$1	258	38	65	11.1147
eeeee!!ccc[ammmma]ccceeeee]	chr18:3452370-3452633(+)$1	263	64	91	10.3903
c!!dddd[ddddmmmmdddd]ddddcc	chr5:178977930-178978275(+)$1	345	91	118	9.4959
ccc####ddddmmmmdddd333ccc::	chr16:88556268-88556549(+)$1	281	139	166	8.3986
c[ccc[ffffffmmmmffffff]ccc3	chr16:89475601-89475843(-)$1	242	118	145	9.4298
[cccdddd[cccooooooccc]dddd2	chr19:1415995-1416243(+)$1	248	64	91	9.7070
eee!!ddddcccmmmmccc333dddd2	chr21:45350131-45350364(+)$1	233	131	158	12.8245
ddd"""eeeeemmmmeeeee22dddd2	chr17:1302573-1302832(-)$1	259	120	147	8.5317
ddddccc[ddddmmmmdddd]cccggg	chr19:40778270-40778541(-)$1	271	138	165	10.0401
dddccc[ddddmmmmdddd333ccc]d	chr16:89556790-89557041(-)$1	251	115	142	10.1191

#otherMatches

#Seq PSSM
ACGUUGCACGUCCCCCGGCUCAGCACC	chr7:4762608-4762896(+)$1	288	243	270	12.8907
UACCCCUGGGCUCUGAGGCCUGGUGGU	chr2:153574992-153575234(+)$1	242	28	55	10.1598
UGACUUUAAGCCUGGAGGUGGGAUGUC	chr12:132386130-132386380(+)$1	250	19	46	10.4878
GGUGAGAGGAAUCCUCAUUUUUCUCUG	chr20:1164867-1165145(-)$1	278	199	226	10.8087
CCAGGGAAGGGAUGGAUCUCUGCCUUC	chr20:35490696-35490958(-)$1	262	202	229	9.3227
GGCCCACGUGGCUGCUGCUUCCUUGUU	chr2:242597259-242597550(+)$1	291	256	283	11.6040
GGAGGCCAGGAUCCUUCCUCGAGUCCU	chr10:43891619-43891850(-)$1	231	106	133	9.4096
GCCCCUCCGUCUGCAGAGUCCUUAGGG	chr4:111118372-111118622(-)$1	250	10	37	10.4537
UAGAGGGGAGGGGCCGCCUGGAUUUGU	chr20:62580901-62581167(-)$1	266	117	144	13.3053
CUCAGACUCAGGGCCUCCCACAGGUCA	chr19:1015691-1015956(-)$1	265	3	30	10.8223
GUUGUGAAACCUCGUGGUUUAGUUGAC	chr12:31478402-31478627(-)$1	225	142	169	8.5889
UGGGAAGUGUCUUCUUGGAGACGUCCC	chr17:80519361-80519644(+)$1	283	240	267	10.1822
GCCGGGUGGUCGAGGGAGCGAGCACAU	chr17:7476912-7477183(+)$1	271	27	54	10.5354
GUUGGGCGAGGGAGAGCCCCCGGCCGG	chr18:3450210-3450452(+)$1	242	27	54	10.1590
GCGCUGCCUCGGAGUCCCGCGUGUAUA	chr19:46172497-46172779(+)$1	282	106	133	11.2355
CUUGUUUCCAGAAUUUUCUAUUAACCU	chr7:919023-919292(+)$1	269	201	228	10.6202
GCAUCUCCUUGCUGGAGCAGGGGUCCA	chr16:50306473-50306699(+)$1	226	151	178	9.1457
UCCCCGCGGGGCUGCAGGCGCCGGAGC	chr12:98910037-98910276(+)$1	239	31	58	10.0041
GACCAAGUUGGCGGUGGCUGAGGAGUU	chr4:1805232-1805475(+)$1	243	50	77	11.3560
CCGGUGGGUUCCGGUCGGGUUGCAUCG	chr22:50629069-50629318(+)$1	249	153	180	12.0235
CUUUUUUGGUGUCAGGACAAGUAAAAA	chr16:89360571-89360818(-)$1	247	9	36	13.3037
CCUGAAGUCCUUGUUAGAGGGCAUGGG	chr10:126805885-126806154(-)$1	269	162	189	9.0894
GAGCGGAGAGGCCGUCGCCACCCCGCC	chr4:76597780-76598050(-)$1	270	114	141	12.5513
GCCGUGAGGAGGCCUUCCUGUUUUGGG	chr16:16043787-16044048(+)$1	261	136	163	12.7805
CAACUCCUGUGACUUCCUCAAGGCGGU	chr19:807044-807316(+)$1	272	41	68	9.2937
AGUUAAAAAGAAAAUUAUUCAUUUCUG	chr16:21530638-21530883(-)$1	245	149	176	9.4237
UUGGGGCAGUGGCGAUCCAUUGUAUUG	chr11:32915110-32915390(+)$1	280	133	160	10.1943
AUGAGGCCCUGGUCAUUUCCACGCCCA	chr2:97534339-97534592(-)$1	253	221	248	10.2544
UUUCCCUUUCGUUCUUUGCUCUAAGUG	chr6:12013009-12013303(+)$1	294	129	156	8.8355
GAGGGUGGAAGUCAGUACAUCCCCCAC	chr19:42756350-42756605(-)$1	255	111	138	9.8561
CCUAGCCCACUGGAGUUAGUGGUUGGG	chr12:123871942-123872171(+)$1	229	195	222	9.6534
CUCAUGUUGCUGGACACGCUUUUUGGG	chr17:76116525-76116791(-)$1	266	17	44	9.4197
CCUGUCCCAUGGGAGCAUGCAAGGACC	chr9:94606946-94607192(-)$1	246	37	64	9.4873
ucuaggagaggauacuuccuugcaucu	chr9:136020213-136020499(-)$1	286	29	56	9.4349
guuggauuggcugccacaaguguccuc	chr16:21520707-21520994(-)$1	287	151	178	9.1861
GCCGUGGGUGGGUUUGGUCUCCUCGGC	chr22:50049780-50050022(-)$1	242	87	114	8.8034
CUGGUUGGUCUUUAUUGAGCACCUACU	chr19:863083-863375(+)$1	292	227	254	12.2198
GGCCAGUGAGGCCCCAGCCCCGUGGCG	chr4:895338-895570(-)$1	232	47	74	12.7212
GCAGGUAGCGCGACAGGGUGCUGCCUG	chr20:32255392-32255647(-)$1	255	175	202	9.5361
UGGGGCUGCUGGGAAACCGUGAAGCUU	chr22:46977885-46978145(+)$1	260	199	226	12.8380
UGGUGUGUUGACUGCCGUCCUCCCCAU	chr19:13111569-13111824(+)$1	255	149	176	10.7384
UGUGACUUGAAUGGGAGUUGGGGGAGC	chr20:61842164-61842414(-)$1	250	177	204	12.3093
AGCGGAAGCGGCCGCCGCCAUUUCCUU	chr5:179050305-179050538(-)$1	233	117	144	11.3750
GCCGUUUCUGGAGUCUUCUGGAAGCUC	chr22:50037506-50037767(-)$1	261	160	187	10.4344
AAGGGCCUGUCUGGAGGAAGGGAUUCC	chr17:76124019-76124313(-)$1	294	194	221	10.6379
GAGUGGCCCGCUCUGCAGCUGUCACCC	chr5:139030280-139030519(+)$1	239	208	235	11.4754
ucaccguggucccaauggagucgcuuu	chr3:195677773-195678031(-)$1	258	38	65	11.1147
GAGGCUGCCGAGGUUACCCGGGUUUCU	chr18:3452370-3452633(+)$1	263	64	91	10.3903
CUGCGCCUGGGUCUUUACUCCGGCGGC	chr5:178977930-178978275(+)$1	345	91	118	9.4959
UGGGGAGGGGCAGGUGCUCGAGCCAGA	chr16:88556268-88556549(+)$1	281	139	166	8.3986
GUGCUAGAACCUGUGGGGGUUUGAGCU	chr16:89475601-89475843(-)$1	242	118	145	9.4298
UCGCGGGGGCUGAGUGUACAGGCCCCA	chr19:1415995-1416243(+)$1	248	64	91	9.7070
GCUGAGCGCUGAGGGAUCAUUUGUGUA	chr21:45350131-45350364(+)$1	233	131	158	12.8245
UGCAGUUCGUCUUCGGGCGGUGGCAGG	chr17:1302573-1302832(-)$1	259	120	147	8.5317
CGCGAGCCUUCGUUAGCGAAUGCUGAU	chr19:40778270-40778541(-)$1	271	138	165	10.0401
CCGGGGAGGCGCCGCCGCCGAGCCCGC	chr16:89556790-89557041(-)$1	251	115	142	10.1191

#DB
.((.(((..(((....)))...))).)	chr7:4762608-4762896(+)$1	1	243	270	12.8907
((((.(((((((....))))))).)))	chr2:153574992-153575234(+)$1	1	28	55	10.1598
((((.((..(((....)))..)).)))	chr12:132386130-132386380(+)$1	1	19	46	10.4878
((((((((((((....))))))))).)	chr20:1164867-1165145(-)$1	1	199	226	10.8087
(.((((.(((((....))))).)))).	chr20:35490696-35490958(-)$1	1	202	229	9.3227
(((.((.(.(((....)))..).))..	chr2:242597259-242597550(+)$1	1	256	283	11.6040
(((..(.((((....)))).)..))))	chr10:43891619-43891850(-)$1	1	106	133	9.4096
((((((..(.((....)).)...))))	chr4:111118372-111118622(-)$1	1	10	37	10.4537
.((((.((((((....)))...))).)	chr20:62580901-62581167(-)$1	1	117	144	13.3053
((..((((..(((...)))...)))).	chr19:1015691-1015956(-)$1	1	3	30	10.8223
(((...(((((....)))))....)))	chr12:31478402-31478627(-)$1	1	142	169	8.5889
.((((.((.(((....))).)).))))	chr17:80519361-80519644(+)$1	1	240	267	10.1822
((((.(((.(((......))).))).)	chr17:7476912-7477183(+)$1	1	27	54	10.5354
(((((.((.(((....))).)).))))	chr18:3450210-3450452(+)$1	1	27	54	10.1590
))))((((.(((....))).).))).(	chr19:46172497-46172779(+)$1	1	106	133	11.2355
)).(((...(((....)))...)))..	chr7:919023-919292(+)$1	1	201	228	10.6202
((....((((((....)))))))))))	chr16:50306473-50306699(+)$1	1	151	178	9.1457
((.(..(((.(((...))).)))..).	chr12:98910037-98910276(+)$1	1	31	58	10.0041
.(((((.(((((....)))...)).))	chr4:1805232-1805475(+)$1	1	50	77	11.3560
((((((.(.(((....))).).)))))	chr22:50629069-50629318(+)$1	1	153	180	12.0235
((((((...(((....)))...)))))	chr16:89360571-89360818(-)$1	1	9	36	13.3037
((((..((((((....)))))).))))	chr10:126805885-126806154(-)$1	1	162	189	9.0894
(.((((.(.(((....))).).)))))	chr4:76597780-76598050(-)$1	1	114	141	12.5513
.(((.(((.(((....))).)))))))	chr16:16043787-16044048(+)$1	1	136	163	12.7805
((.(.(((.(((.....)))))).).)	chr19:807044-807316(+)$1	1	41	68	9.2937
((...(((.(((.....))).))))))	chr16:21530638-21530883(-)$1	1	149	176	9.4237
((.(.(((((((....)))))))..).	chr11:32915110-32915390(+)$1	1	133	160	10.1943
(((.(((..(((......))).)))))	chr2:97534339-97534592(-)$1	1	221	248	10.2544
)))))))))))))))))))...)))))	chr6:12013009-12013303(+)$1	1	129	156	8.8355
..(((.(((.((....)).)))))).)	chr19:42756350-42756605(-)$1	1	111	138	9.8561
(((((((.((((....)))))))))))	chr12:123871942-123872171(+)$1	1	195	222	9.6534
((((....((.(....)))....))))	chr17:76116525-76116791(-)$1	1	17	44	9.4197
(((((((((((....))))...)))).	chr9:94606946-94607192(-)$1	1	37	64	9.4873
(..(((((((((....)))))...)))	chr9:136020213-136020499(-)$1	1	29	56	9.4349
(..((((..(((......)))))))..	chr16:21520707-21520994(-)$1	1	151	178	9.1861
((((.(((.((......)).)))))))	chr22:50049780-50050022(-)$1	1	87	114	8.8034
.((((.((((((....))).))).)))	chr19:863083-863375(+)$1	1	227	254	12.2198
.((((..(.(((....))))..)))).	chr4:895338-895570(-)$1	1	47	74	12.7212
(((((((((((......))))))))))	chr20:32255392-32255647(-)$1	1	175	202	9.5361
(((((((.((((....))).).)))))	chr22:46977885-46978145(+)$1	1	199	226	12.8380
(((((.(..(((....)))..)..)).	chr19:13111569-13111824(+)$1	1	149	176	10.7384
(((..(((.(((....))).)))..))	chr20:61842164-61842414(-)$1	1	177	204	12.3093
((.(((((.(((....))).))))).)	chr5:179050305-179050538(-)$1	1	117	144	11.3750
((((((((((((....)))))))))..	chr22:50037506-50037767(-)$1	1	160	187	10.4344
((...(((.(((...))))))..))).	chr17:76124019-76124313(-)$1	1	194	221	10.6379
(.(((((..(((....))).))))).)	chr5:139030280-139030519(+)$1	1	208	235	11.4754
.((..(((((((....))).))))...	chr3:195677773-195678031(-)$1	1	38	65	11.1147
(((((..(((.(....).)))))))).	chr18:3452370-3452633(+)$1	1	64	91	10.3903
(..((((.((((....)))).))))))	chr5:178977930-178978275(+)$1	1	91	118	9.4959
(((....((((....))))...)))..	chr16:88556268-88556549(+)$1	1	139	166	8.3986
(.(((.((((((....)))))).))).	chr16:89475601-89475843(-)$1	1	118	145	9.4298
.(((((((.(((......))).)))).	chr19:1415995-1416243(+)$1	1	64	91	9.7070
(((..(((((((....)))...)))).	chr21:45350131-45350364(+)$1	1	131	158	12.8245
(((...(((((....)))))..)))).	chr17:1302573-1302832(-)$1	1	120	147	8.5317
))))(((.((((....)))).)))(((	chr19:40778270-40778541(-)$1	1	138	165	10.0401
((((((.((((....))))...))).)	chr16:89556790-89557041(-)$1	1	115	142	10.1191

#PSSM
d : 0.24	e : 0.14	[ : 0.12	c : 0.12	f : 0.10	g : 0.08	= : 0.05	h : 0.03	! : 0.03	: : 0.01	i : 0.01	
d : 0.30	e : 0.16	c : 0.10	f : 0.08	[ : 0.07	g : 0.07	! : 0.07	= : 0.05	b : 0.03	h : 0.01	i : 0.01	
d : 0.23	e : 0.16	c : 0.12	f : 0.08	! : 0.07	[ : 0.07	g : 0.05	= : 0.05	b : 0.03	" : 0.03	h : 0.01	: : 0.01	# : 0.01	i : 0.01	
d : 0.21	e : 0.12	c : 0.10	! : 0.08	" : 0.07	[ : 0.05	f : 0.05	i : 0.05	g : 0.05	a : 0.05	= : 0.05	# : 0.03	h : 0.01	b : 0.01	
d : 0.21	c : 0.14	[ : 0.12	! : 0.10	e : 0.08	" : 0.07	i : 0.05	# : 0.05	= : 0.05	b : 0.03	g : 0.03	f : 0.01	
c : 0.23	d : 0.17	[ : 0.12	g : 0.07	! : 0.07	e : 0.07	i : 0.05	# : 0.05	= : 0.05	b : 0.03	" : 0.03	a : 0.01	
c : 0.26	d : 0.14	[ : 0.12	e : 0.07	g : 0.05	b : 0.05	! : 0.05	f : 0.05	= : 0.05	i : 0.03	" : 0.03	# : 0.03	a : 0.01	
c : 0.21	d : 0.14	! : 0.12	e : 0.08	a : 0.08	[ : 0.07	b : 0.05	f : 0.05	g : 0.03	i : 0.03	" : 0.03	= : 0.03	# : 0.01	
[ : 0.28	d : 0.16	! : 0.12	c : 0.08	e : 0.07	f : 0.05	g : 0.03	i : 0.03	a : 0.03	" : 0.03	b : 0.03	= : 0.03	
c : 0.53	d : 0.12	e : 0.07	[ : 0.05	f : 0.05	g : 0.03	i : 0.03	= : 0.03	b : 0.03	! : 0.01	
c : 0.55	d : 0.12	e : 0.07	b : 0.05	f : 0.05	g : 0.03	i : 0.03	= : 0.03	[ : 0.03	
c : 0.55	m : 0.10	f : 0.05	d : 0.05	g : 0.03	i : 0.03	e : 0.03	b : 0.03	a : 0.03	o : 0.03	= : 0.01	
m : 0.78	o : 0.10	c : 0.03	n : 0.03	= : 0.01	l : 0.01	
m : 0.78	o : 0.10	l : 0.05	n : 0.03	= : 0.01	
m : 0.78	o : 0.10	l : 0.05	n : 0.03	= : 0.01	
m : 0.67	o : 0.10	d : 0.07	l : 0.03	e : 0.03	n : 0.03	= : 0.01	c : 0.01	
c : 0.46	d : 0.12	o : 0.10	e : 0.07	f : 0.05	g : 0.03	i : 0.03	b : 0.03	n : 0.03	a : 0.03	
c : 0.49	d : 0.12	e : 0.07	b : 0.07	o : 0.07	f : 0.05	g : 0.03	i : 0.03	= : 0.01	] : 0.01	
c : 0.58	d : 0.12	e : 0.07	f : 0.05	g : 0.03	i : 0.03	] : 0.03	b : 0.03	= : 0.01	
] : 0.26	3 : 0.19	c : 0.16	e : 0.07	2 : 0.05	f : 0.05	d : 0.05	g : 0.03	i : 0.03	a : 0.03	4 : 0.01	= : 0.01	
c : 0.23	3 : 0.21	2 : 0.08	a : 0.08	e : 0.07	g : 0.05	f : 0.05	] : 0.05	i : 0.03	4 : 0.03	b : 0.03	= : 0.01	d : 0.01	
3 : 0.23	c : 0.16	] : 0.14	2 : 0.07	g : 0.05	b : 0.05	f : 0.05	d : 0.05	e : 0.05	i : 0.03	a : 0.03	4 : 0.03	= : 0.01	
c : 0.30	d : 0.19	] : 0.08	g : 0.07	e : 0.07	i : 0.05	2 : 0.05	b : 0.03	3 : 0.03	4 : 0.03	= : 0.03	f : 0.01	
c : 0.24	d : 0.24	e : 0.08	] : 0.07	2 : 0.07	i : 0.05	g : 0.05	f : 0.05	b : 0.03	= : 0.03	4 : 0.01	3 : 0.01	
d : 0.28	c : 0.23	e : 0.10	f : 0.07	g : 0.07	i : 0.05	2 : 0.05	b : 0.03	= : 0.03	] : 0.01	a : 0.01	3 : 0.01	
d : 0.24	] : 0.16	e : 0.12	c : 0.08	f : 0.07	g : 0.07	: : 0.05	3 : 0.03	a : 0.03	= : 0.03	i : 0.01	2 : 0.01	b : 0.01	4 : 0.01	
d : 0.23	e : 0.12	2 : 0.12	] : 0.10	f : 0.08	g : 0.08	3 : 0.05	c : 0.05	: : 0.03	= : 0.03	b : 0.01	i : 0.01	4 : 0.01	

#score	589.0227280189177
#seq	56
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_CDS_m3_run1.txt

#BEAR
!eeeeeffffffcccooooooccc]ffffff333e	chr4:109543570-109543792(+)$1	222	84	119	12.9977
cc!!hhhhhhhhcccooooooccc22hhhhhhhh2	chr11:2154304-2154514(-)$1	210	127	162	13.2533
cc"""ccc!!eeeeeooooooeeeee4444ccc44	chr11:2154657-2154861(-)$1	204	131	166	15.3523
"""ffffffa[ddddoooooodddd]a333fffff	chr2:183902624-183902949(-)$1	325	59	94	13.0216
d:eeeee"""bb[bboooooobb]bb333eeeee:	chr8:99054840-99055047(-)$1	207	119	154	11.1575
fbb[ggggggg[ccc[allla]ccc]ggggggg]b	chr12:123997754-123998010(-)$1	256	173	208	11.6755
[iiiiiiiii"""bblllbb333iiiiiiiiiccc	chr20:60962866-60963070(+)$1	204	101	136	11.4610
=======[bb!!bbrrrrrrrrrbb333bb]====	chr5:149827114-149827320(-)$1	206	9	44	11.0853
cc"""ccc!!eeeeeooooooeeeee4444ccc44	chr11:2154678-2154880(-)$1	202	150	185	15.3523
gggg"""dddd[cccoooooocccdddd333gggg	chr2:21245620-21245847(-)$1	227	152	187	16.2186
c"""ccc$$$$$cccqqqqqqqqccc333ccc333	chr12:6646395-6646613(+)$1	218	78	113	10.6769
==========!!arrrrrrrrra22==========	chr15:55919136-55919427(-)$1	291	75	110	12.4159
eeeee"""a####bboooooobb4444a22eeeee	chr19:58905948-58906150(+)$1	202	118	153	14.6655
fffffccc####cccooooooccc]ccc]ffffff	chr16:89999776-90000050(+)$1	274	129	164	14.8771
ddd[ccc$$$$$cccooooooccc4444cccdddd	chr12:6646166-6646370(+)$1	204	13	48	15.1282
cc[bb[dddd!!cccooooooccc22dddd]bb22	chr6:133135818-133136021(+)$1	203	152	187	14.3958
cc!!hhhhhhhhcccooooooccc22hhhhhhhh2	chr11:2154300-2154504(-)$1	204	117	152	13.2533
dddd[bbbb!!a[bboooooobb]a22bb]bb]dd	chr11:61732139-61732345(-)$1	206	99	134	12.9161
ffffffddddcccbboooooobb]ccc333dddd]	chr22:41922182-41922447(+)$1	265	205	240	13.5065
===[a[ccc####bbmmmmbb333ccc]a]=====	chr20:30802975-30803222(+)$1	247	127	162	11.2656
bb[ccceeeee[cccooooooccceeeee]cccbb	chr11:2154787-2154990(-)$1	203	76	111	14.2237
eeee[bb[ccc[cccnnnnncccccc22bb22eee	chr4:1019014-1019288(+)$1	274	133	168	11.3245
cc"""ccc!!eeeeeooooooeeeee4444ccc44	chr11:2154666-2154870(-)$1	204	140	175	15.3523
hhffffffddddcccooooooccc333dddd]fff	chr5:149825145-149825349(-)$1	204	40	75	13.5521
[iiiiiiiii!!cccooooooccciiiiiiiiidd	chr2:54871499-54871728(+)$1	229	116	151	16.8493
[ccc"""dddd[cccnnnnnccc]dddd]cccggg	chr11:2156505-2156709(-)$1	204	67	102	13.2653
[dddd!!bb[eeeeeooooooeeeee]bb]dddd]	chr20:60963264-60963469(+)$1	205	8	43	12.6640
!eeeee[ccc!!cccoooooocccccceeeeeccc	chr2:61441239-61441564(-)$1	325	97	132	15.1031
###ccc%%%%%%cccooooooccc22ccc22hhhh	chr8:17419452-17419715(+)$1	263	202	237	11.9180
ggg:==========aooooooa]==========::	chr2:63832974-63833248(+)$1	274	198	233	12.8190
dddd[bbbb!!a[bboooooobb]a22bb]bb]dd	chr11:61732104-61732315(-)$1	211	69	104	12.9161
bb[ccceeeee[cccooooooccceeeee]cccbb	chr11:2154730-2154938(-)$1	208	24	59	14.2237
[ccc"""dddd[cccnnnnnccc]dddd]cccggg	chr11:2156516-2156719(-)$1	203	77	112	13.2653
gggggg"""bb[cccnnnnnccc]bb]ggggggg2	chr19:2272633-2272847(+)$1	214	149	184	12.3334
[ccc"""dddd[cccnnnnnccc]dddd]cccggg	chr11:2156513-2156716(-)$1	203	74	109	13.2653
""ccc!!dddd[cccooooooccc333dddd]ccc	chrX:71495320-71495549(-)$1	229	100	135	16.2365
dd[bb"""gggggggoooooogggggggbb]dddd	chr11:17097039-17097270(-)$1	231	86	121	13.1376
==========a[a[bbmmmmbb]a]a]========	chr2:96943876-96944135(-)$1	259	148	183	11.1315
[ffffff[ccc[cccnnnnncccccc]ffffffdd	chr1:93299101-93299317(+)$1	216	76	111	11.5909
cc!!hhhhhhhhcccooooooccc22hhhhhhhh2	chr11:2154211-2154414(-)$1	203	27	62	13.2533
====="""ccc[cccnnnnncccccc22=======	chr12:49521935-49522263(-)$1	328	93	128	14.4725
[ccc"""dddd[cccnnnnnccc]dddd]ccchhh	chr11:2156509-2156713(-)$1	204	71	106	12.7798
d"""bb!!ccc[cccmmmmccc]ccc22bb333dd	chr8:146015751-146015955(-)$1	204	38	73	10.8507
:bb"""iiiiiiiiiooooooiiiiiiiii22bbC	chr15:99478454-99478687(+)$1	233	186	221	11.9395
cc"""ccc!!eeeeeooooooeeeee4444ccc44	chr11:2154680-2154886(-)$1	206	156	191	15.3523
""bb!!dddd"""bboooooobb22dddd]bbccc	chr17:73259468-73259689(+)$1	221	124	159	13.4879
eeeeedddd[eeeeeooooooeeeee22dddd]ee	chr3:49136579-49136786(-)$1	207	5	40	12.0226
ccc[ccc!!ffffffooooooffffff22ccc22c	chr3:23959830-23960065(+)$1	235	16	51	13.0831
[ccc[ccc[aeeeeeooooooeeeee333a]ccc]	chr12:57538989-57539256(+)$1	267	183	218	15.1670
[eeeee[bb####bboooooobb333bb22eeeee	chr19:39966625-39966914(+)$1	289	170	205	13.6235

#otherMatches

#Seq PSSM
UAUUUUUCUUAUGCAGGUUCGUGCUGUAAGACCUA	chr4:109543570-109543792(+)$1	222	84	119	12.9977
CGCCUGCGCAGGGGCCUGCCUGCCCUCCUGCGUGC	chr11:2154304-2154514(-)$1	210	127	162	13.2533
CCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCU	chr11:2154657-2154861(-)$1	204	131	166	15.3523
GAAGGCCGCGGGCCCGUGACUgggcgcgaggcggc	chr2:183902624-183902949(-)$1	325	59	94	13.0216
GGGCACAGCAUGCGGAAAAUACUACAGAGUGUGCA	chr8:99054840-99055047(-)$1	207	119	154	11.1575
CGGGAGGAGUUUGUGGCUUUGGCACUGACUUCUGU	chr12:123997754-123998010(-)$1	256	173	208	11.6755
AUGGUGAGUGUUUCCCUGGGCUUUGCUCAUCACUU	chr20:60962866-60963070(+)$1	204	101	136	11.4610
UCCUUCCACUCAGAAAUGGCACCUCGAAAGGGGAA	chr5:149827114-149827320(-)$1	206	9	44	11.0853
CCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCU	chr11:2154678-2154880(-)$1	202	150	185	15.3523
UUUCAGCCAAGUCUGCCUAGCCAGUUUGAAAGAGA	chr2:21245620-21245847(-)$1	227	152	187	16.2186
GCAAUGCCUCCUGCACCACCAACUGCUUAGCACCC	chr12:6646395-6646613(+)$1	218	78	113	10.6769
CUGAGUAAAUGUGUUUUCCCUUCUAGUUUAUUCAG	chr15:55919136-55919427(-)$1	291	75	110	12.4159
GCCAUUAAGAAGAAGGACGAGCUGGAGCGUGUGGC	chr19:58905948-58906150(+)$1	202	118	153	14.6655
UGGACCUGGAACCCGGAACCAUGGACAGUGUCCGC	chr16:89999776-90000050(+)$1	274	129	164	14.8771
AGUGCAGGAGGGCCCGCGGGAGGGGAAGCUGACUC	chr12:6646166-6646370(+)$1	204	13	48	15.1282
guggggcuagagcuggCGGAACAGGACUGGGUCAA	chr6:133135818-133136021(+)$1	203	152	187	14.3958
CGCCUGCGCAGGGGCCUGCCUGCCCUCCUGCGUGC	chr11:2154300-2154504(-)$1	204	117	152	13.2533
UAUCUCUUUGACAAGCACACCCUGGGAGACAGUGA	chr11:61732139-61732345(-)$1	206	99	134	12.9161
GGCCAACUCCGUGCGCAAUGCCGUCACUCAGGAGU	chr22:41922182-41922447(+)$1	265	205	240	13.5065
UGGAGCCCCUCCAGGCUUACCAUCGGGUCAUCAGC	chr20:30802975-30803222(+)$1	247	127	162	11.2656
UGUGCUGUGGGACUUCCAGGCAGGCCCGCAAGCCG	chr11:2154787-2154990(-)$1	203	76	111	14.2237
CUGCAGUGGGCACGGGGGGGCCGGCCAGACAGGCA	chr4:1019014-1019288(+)$1	274	133	168	11.3245
CCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCU	chr11:2154666-2154870(-)$1	204	140	175	15.3523
AAAGGAGAUCUUCCAUUGACUUGGCCAAAGGCUCU	chr5:149825145-149825349(-)$1	204	40	75	13.5521
AGCUGUGCAGAUCUAGACAAAUGGCUGCACGGCCU	chr2:54871499-54871728(+)$1	229	116	151	16.8493
GUGGACACCCUCCAGUUCGUCUGUGGGGACCGCGG	chr11:2156505-2156709(-)$1	204	67	102	13.2653
GAGAGACGUGGGCUGGUGGCACAGCUGACCUUCUG	chr20:60963264-60963469(+)$1	205	8	43	12.6640
UUUUGGUACAAUGUCUGUGCUGACUGUCCAGAGAA	chr2:61441239-61441564(-)$1	325	97	132	15.1031
UAUUCAUUUUCUCUGUAUAAUUAGUUUGGUAAGUA	chr8:17419452-17419715(+)$1	263	202	237	11.9180
UUGGAGCUAUUUCCCUUCUUUGAGGAAGUAGUUAU	chr2:63832974-63833248(+)$1	274	198	233	12.8190
UAUCUCUUUGACAAGCACACCCUGGGAGACAGUGA	chr11:61732104-61732315(-)$1	211	69	104	12.9161
UGUGCUGUGGGACUUCCAGGCAGGCCCGCAAGCCG	chr11:2154730-2154938(-)$1	208	24	59	14.2237
GUGGACACCCUCCAGUUCGUCUGUGGGGACCGCGG	chr11:2156516-2156719(-)$1	203	77	112	13.2653
GUCUUCAUUUGCUUCCACAAGAACCGCGAGGACAG	chr19:2272633-2272847(+)$1	214	149	184	12.3334
GUGGACACCCUCCAGUUCGUCUGUGGGGACCGCGG	chr11:2156513-2156716(-)$1	203	74	109	13.2653
CAUUAAAAUCGAUGGCAAGGUCCGAACUGAUAUAA	chrX:71495320-71495549(-)$1	229	100	135	16.2365
GAUUCCCUUUUCAGGUGUAAUCCUGAGAGAUUCAC	chr11:17097039-17097270(-)$1	231	86	121	13.1376
UCUCCUGAGGCAGGUGAGGACAGCAGACUUCAGGA	chr2:96943876-96944135(-)$1	259	148	183	11.1315
GAUGAUAGUUCGUGUGACAAACAGAGAUAUCAUUU	chr1:93299101-93299317(+)$1	216	76	111	11.5909
CGCCUGCGCAGGGGCCUGCCUGCCCUCCUGCGUGC	chr11:2154211-2154414(-)$1	203	27	62	13.2533
UGGUAAAUACAUGGCUUGCUGCCUGUUGUACCGUG	chr12:49521935-49522263(-)$1	328	93	128	14.4725
GUGGACACCCUCCAGUUCGUCUGUGGGGACCGCGG	chr11:2156509-2156713(-)$1	204	71	106	12.7798
UGAGGGGAGGUGGGGGUGCUCUGACCGACUGGGGG	chr8:146015751-146015955(-)$1	204	38	73	10.8507
AGGCCAGAAAUGGAGGUCAGUUUUCAUUUCCACCG	chr15:99478454-99478687(+)$1	233	186	221	11.9395
CCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCU	chr11:2154680-2154886(-)$1	206	156	191	15.3523
AUGAAUGGCCAGGGCAAGAAAGCAGGGCCCUCCAC	chr17:73259468-73259689(+)$1	221	124	159	13.4879
CCCGGGUAUAGCCCAGCAGGUUGGGUAGAUACAUU	chr3:49136579-49136786(-)$1	207	5	40	12.0226
GGUGGAGUAUUAGUGACAAGCCAUUGAGUCUUAAG	chr3:23959830-23960065(+)$1	235	16	51	13.0831
UGGGGACAGUGCUGCUCAGACGCAGCUCAAGUGUG	chr12:57538989-57539256(+)$1	267	183	218	15.1670
ACCCCCACCAAGAACAACAAGGUAAGGGCAGGGGG	chr19:39966625-39966914(+)$1	289	170	205	13.6235

#DB
.((((((((((((((......))).))))))...)	chr4:109543570-109543792(+)$1	1	84	119	12.9977
((..(((((((((((......)))..)))))))).	chr11:2154304-2154514(-)$1	1	127	162	13.2533
((...(((..(((((......)))))....)))..	chr11:2154657-2154861(-)$1	1	131	166	15.3523
...(((((((.((((......)))).)...)))))	chr2:183902624-183902949(-)$1	1	59	94	13.0216
).(((((...((.((......)).))...))))).	chr8:99054840-99055047(-)$1	1	119	154	11.1575
(((.(((((((.(((.(...).))).))))))).)	chr12:123997754-123998010(-)$1	1	173	208	11.6755
.(((((((((...((...))...))))))))))))	chr20:60962866-60963070(+)$1	1	101	136	11.4610
(((((((.((..((.........))...)).))))	chr5:149827114-149827320(-)$1	1	9	44	11.0853
((...(((..(((((......)))))....)))..	chr11:2154678-2154880(-)$1	1	150	185	15.3523
((((...((((.(((......)))))))...))))	chr2:21245620-21245847(-)$1	1	152	187	16.2186
(...(((.....(((........)))...)))...	chr12:6646395-6646613(+)$1	1	78	113	10.6769
((((((((((..(.........)..))))))))))	chr15:55919136-55919427(-)$1	1	75	110	12.4159
(((((...(....((......))....)..)))))	chr19:58905948-58906150(+)$1	1	118	153	14.6655
((((((((....(((......))).))).))))))	chr16:89999776-90000050(+)$1	1	129	164	14.8771
(((.(((.....(((......)))....)))))))	chr12:6646166-6646370(+)$1	1	13	48	15.1282
((.((.((((..(((......)))..)))).))..	chr6:133135818-133136021(+)$1	1	152	187	14.3958
((..(((((((((((......)))..)))))))).	chr11:2154300-2154504(-)$1	1	117	152	13.2533
((((.((((..(.((......)).)..)).)).))	chr11:61732139-61732345(-)$1	1	99	134	12.9161
(((((((((((((((......)).)))...)))).	chr22:41922182-41922447(+)$1	1	205	240	13.5065
(((.(.(((....((....))...))).).)))))	chr20:30802975-30803222(+)$1	1	127	162	11.2656
((.((((((((.(((......)))))))).)))))	chr11:2154787-2154990(-)$1	1	76	111	14.2237
((((.((.(((.(((.....))))))..))..)))	chr4:1019014-1019288(+)$1	1	133	168	11.3245
((...(((..(((((......)))))....)))..	chr11:2154666-2154870(-)$1	1	140	175	15.3523
(((((((((((((((......)))...)))).)))	chr5:149825145-149825349(-)$1	1	40	75	13.5521
.(((((((((..(((......))))))))))))))	chr2:54871499-54871728(+)$1	1	116	151	16.8493
.(((...((((.(((.....))).)))).))))))	chr11:2156505-2156709(-)$1	1	67	102	13.2653
.((((..((.(((((......))))).)).)))).	chr20:60963264-60963469(+)$1	1	8	43	12.6640
.(((((.(((..(((......))))))))))))))	chr2:61441239-61441564(-)$1	1	97	132	15.1031
...(((......(((......)))..)))..))))	chr8:17419452-17419715(+)$1	1	202	237	11.9180
))).(((((((((((......).))))))))))..	chr2:63832974-63833248(+)$1	1	198	233	12.8190
((((.((((..(.((......)).)..)).)).))	chr11:61732104-61732315(-)$1	1	69	104	12.9161
((.((((((((.(((......)))))))).)))))	chr11:2154730-2154938(-)$1	1	24	59	14.2237
.(((...((((.(((.....))).)))).))))))	chr11:2156516-2156719(-)$1	1	77	112	13.2653
((((((...((.(((.....))).)).))))))).	chr19:2272633-2272847(+)$1	1	149	184	12.3334
.(((...((((.(((.....))).)))).))))))	chr11:2156513-2156716(-)$1	1	74	109	13.2653
..(((..((((.(((......)))...)))).)))	chrX:71495320-71495549(-)$1	1	100	135	16.2365
((.((...(((((((......))))))))).))))	chr11:17097039-17097270(-)$1	1	86	121	13.1376
(((((((((((.(.((....)).).).))))))))	chr2:96943876-96944135(-)$1	1	148	183	11.1315
.((((((.(((.(((.....)))))).))))))))	chr1:93299101-93299317(+)$1	1	76	111	11.5909
((..(((((((((((......)))..)))))))).	chr11:2154211-2154414(-)$1	1	27	62	13.2533
(((((...(((.(((.....))))))..)))))))	chr12:49521935-49522263(-)$1	1	93	128	14.4725
.(((...((((.(((.....))).)))).))))))	chr11:2156509-2156713(-)$1	1	71	106	12.7798
(...((..(((.(((....))).)))..))...))	chr8:146015751-146015955(-)$1	1	38	73	10.8507
.((...(((((((((......)))))))))..)))	chr15:99478454-99478687(+)$1	1	186	221	11.9395
((...(((..(((((......)))))....)))..	chr11:2154680-2154886(-)$1	1	156	191	15.3523
..((..((((...((......))..)))).)))))	chr17:73259468-73259689(+)$1	1	124	159	13.4879
(((((((((.(((((......)))))..)))).))	chr3:49136579-49136786(-)$1	1	5	40	12.0226
(((.(((..((((((......))))))..)))..)	chr3:23959830-23960065(+)$1	1	16	51	13.0831
.(((.(((.((((((......)))))...).))).	chr12:57538989-57539256(+)$1	1	183	218	15.1670
.(((((.((....((......))...))..)))))	chr19:39966625-39966914(+)$1	1	170	205	13.6235

#PSSM
c : 0.19	[ : 0.19	d : 0.12	= : 0.10	" : 0.06	f : 0.06	g : 0.06	e : 0.06	! : 0.04	b : 0.04	h : 0.02	# : 0.02	: : 0.02	
c : 0.27	e : 0.12	" : 0.10	= : 0.10	d : 0.10	b : 0.08	g : 0.06	f : 0.06	i : 0.04	: : 0.02	h : 0.02	# : 0.02	
e : 0.14	" : 0.14	c : 0.14	= : 0.10	f : 0.08	d : 0.08	[ : 0.08	! : 0.06	b : 0.06	g : 0.06	i : 0.04	# : 0.02	
c : 0.18	e : 0.14	" : 0.14	f : 0.10	[ : 0.08	= : 0.08	! : 0.06	b : 0.06	d : 0.06	i : 0.04	g : 0.04	: : 0.02	
" : 0.19	c : 0.14	e : 0.12	f : 0.10	= : 0.10	[ : 0.08	h : 0.06	b : 0.06	g : 0.04	i : 0.04	a : 0.02	d : 0.02	! : 0.02	
c : 0.23	" : 0.18	e : 0.08	f : 0.08	= : 0.08	b : 0.08	h : 0.06	! : 0.06	g : 0.04	i : 0.04	[ : 0.04	d : 0.02	
c : 0.19	" : 0.18	f : 0.08	= : 0.08	d : 0.08	h : 0.06	e : 0.06	i : 0.06	b : 0.06	! : 0.06	[ : 0.04	g : 0.02	% : 0.02	
d : 0.19	c : 0.16	" : 0.10	b : 0.08	f : 0.06	h : 0.06	i : 0.06	[ : 0.06	= : 0.06	$ : 0.04	e : 0.04	! : 0.04	g : 0.02	% : 0.02	
d : 0.21	c : 0.12	! : 0.10	b : 0.10	h : 0.06	i : 0.06	= : 0.06	f : 0.04	" : 0.04	g : 0.04	$ : 0.04	e : 0.04	a : 0.02	# : 0.02	% : 0.02	[ : 0.02	
d : 0.19	! : 0.12	c : 0.10	# : 0.08	h : 0.06	i : 0.06	= : 0.06	f : 0.04	a : 0.04	g : 0.04	b : 0.04	$ : 0.04	e : 0.04	[ : 0.04	" : 0.02	% : 0.02	
e : 0.18	! : 0.14	d : 0.14	c : 0.10	# : 0.08	h : 0.06	f : 0.04	b : 0.04	g : 0.04	" : 0.04	$ : 0.04	[ : 0.02	% : 0.02	= : 0.02	a : 0.02	i : 0.02	
[ : 0.30	e : 0.14	! : 0.10	# : 0.08	h : 0.06	f : 0.04	d : 0.04	" : 0.04	$ : 0.04	a : 0.04	b : 0.02	c : 0.02	% : 0.02	= : 0.02	g : 0.02	i : 0.02	
c : 0.54	e : 0.14	[ : 0.06	# : 0.06	" : 0.04	a : 0.04	d : 0.02	b : 0.02	= : 0.02	g : 0.02	i : 0.02	f : 0.02	
c : 0.52	b : 0.19	e : 0.14	d : 0.02	r : 0.02	= : 0.02	g : 0.02	[ : 0.02	i : 0.02	f : 0.02	
c : 0.52	b : 0.19	e : 0.14	r : 0.04	d : 0.02	a : 0.02	g : 0.02	i : 0.02	f : 0.02	
o : 0.68	n : 0.16	r : 0.04	m : 0.04	[ : 0.02	l : 0.02	q : 0.02	b : 0.02	
o : 0.68	n : 0.16	m : 0.06	r : 0.04	a : 0.02	l : 0.02	q : 0.02	
o : 0.68	n : 0.16	m : 0.06	l : 0.04	r : 0.04	q : 0.02	
o : 0.68	n : 0.16	m : 0.06	r : 0.04	l : 0.02	b : 0.02	q : 0.02	
o : 0.68	n : 0.16	b : 0.04	r : 0.04	l : 0.02	q : 0.02	m : 0.02	c : 0.02	
o : 0.68	c : 0.18	r : 0.04	b : 0.04	a : 0.02	3 : 0.02	q : 0.02	
c : 0.48	b : 0.16	e : 0.14	3 : 0.04	r : 0.04	d : 0.02	] : 0.02	q : 0.02	a : 0.02	g : 0.02	i : 0.02	f : 0.02	
c : 0.48	e : 0.14	b : 0.14	] : 0.06	3 : 0.04	d : 0.02	r : 0.02	q : 0.02	a : 0.02	g : 0.02	i : 0.02	f : 0.02	
c : 0.42	] : 0.18	e : 0.14	i : 0.04	2 : 0.04	3 : 0.04	d : 0.02	b : 0.02	4 : 0.02	= : 0.02	g : 0.02	a : 0.02	f : 0.02	
e : 0.18	c : 0.18	2 : 0.14	d : 0.12	] : 0.06	b : 0.06	i : 0.06	3 : 0.06	4 : 0.04	a : 0.04	= : 0.02	g : 0.02	f : 0.02	
e : 0.18	c : 0.18	2 : 0.14	d : 0.12	3 : 0.08	i : 0.06	f : 0.04	] : 0.04	b : 0.04	= : 0.04	4 : 0.04	g : 0.02	a : 0.02	
d : 0.14	4 : 0.12	3 : 0.12	2 : 0.12	c : 0.10	] : 0.08	h : 0.06	i : 0.06	f : 0.04	g : 0.04	= : 0.04	e : 0.04	a : 0.02	b : 0.02	
d : 0.18	3 : 0.12	4 : 0.10	2 : 0.10	b : 0.08	h : 0.06	g : 0.06	i : 0.06	= : 0.06	e : 0.06	f : 0.04	c : 0.04	a : 0.02	] : 0.02	
b : 0.14	3 : 0.12	] : 0.10	d : 0.10	4 : 0.08	= : 0.08	h : 0.06	i : 0.06	2 : 0.06	e : 0.06	f : 0.04	g : 0.04	c : 0.04	a : 0.02	
c : 0.14	] : 0.14	4 : 0.08	b : 0.08	= : 0.08	d : 0.08	f : 0.06	h : 0.06	3 : 0.06	i : 0.06	2 : 0.06	e : 0.04	g : 0.04	a : 0.02	
c : 0.25	= : 0.10	d : 0.10	f : 0.08	e : 0.08	] : 0.08	h : 0.06	b : 0.06	2 : 0.06	g : 0.04	i : 0.04	3 : 0.04	
c : 0.25	= : 0.12	d : 0.10	h : 0.08	e : 0.08	b : 0.08	f : 0.06	g : 0.06	3 : 0.04	i : 0.04	2 : 0.04	] : 0.04	
c : 0.21	g : 0.12	= : 0.12	h : 0.10	f : 0.08	e : 0.08	d : 0.08	3 : 0.06	] : 0.06	b : 0.04	i : 0.02	2 : 0.02	
d : 0.18	h : 0.10	e : 0.10	c : 0.10	= : 0.10	g : 0.10	4 : 0.08	f : 0.06	b : 0.06	3 : 0.04	2 : 0.04	] : 0.02	: : 0.02	
d : 0.14	e : 0.10	2 : 0.10	c : 0.10	= : 0.10	4 : 0.08	g : 0.08	f : 0.06	b : 0.06	] : 0.06	: : 0.04	h : 0.04	3 : 0.02	C : 0.02	

#score	665.8823540191638
#seq	50
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_CDS_m3_run1.txt

#BEAR
cccvvvvvvvvvvvvvcccccc	chr2:232327856-232328127(-)$1	271	103	125	20.4737
gyyyyyyyyyyyyyyyyggggg	chr6:168352705-168352970(+)$1	265	39	61	19.9118
hhhhhuuuuuuuuuuuuhhhhh	chr9:128000817-128001117(-)$1	300	235	257	19.7598
eeeeeesssssssssseeeee2	chr2:232324878-232325104(-)$1	226	55	77	15.3113
eeeevvvvvvvvvvvvveeeee	chr21:27394055-27394278(-)$1	223	139	161	21.5567
ffffftttttttttttffffff	chr19:932542-932796(+)$1	254	33	55	21.6012
ggggguuuuuuuuuuuuggggg	chr3:47676577-47676846(-)$1	269	7	29	21.7837
[ddddtttttttttttddddbb	chr20:62624682-62624938(+)$1	256	114	136	22.0061
eeeeettttttttttteeeeeb	chr18:11981530-11981808(+)$1	278	105	127	22.6510
fffffuuuuuuuuuuuufffff	chr9:127998786-127999066(-)$1	280	244	266	21.2882
fffffuuuuuuuuuuuufffff	chr9:127998866-127999181(-)$1	315	287	309	21.2882
eeeeettttttttttteeeeeC	chr17:76799544-76799923(-)$1	379	131	153	21.9309
eyyyyyyyyyyyyyyyyeeeee	chr14:73577438-73577804(+)$1	366	241	263	20.2254
!ddddtttttttttttdddd22	chr4:6642561-6642843(+)$1	282	205	227	22.3533
[ddddtttttttttttdddd22	chr10:103558678-103558962(-)$1	284	173	195	22.3739
dddduuuuuuuuuuuuddddGG	chr17:79827603-79827920(-)$1	317	70	92	20.7128
ddddwwwwwwwwwwwwwwdddd	chr7:5396705-5396952(-)$1	247	6	28	19.6006
fyyyyyyyyyyyyyyyyfffff	chr2:102472472-102472703(+)$1	231	45	67	19.6278
eeeeettttttttttteeeee:	chr17:27003135-27003439(+)$1	304	159	181	22.1207
eeeeettttttttttteeeee4	chr22:36685104-36685350(-)$1	246	179	201	22.9736
ffffftttttttttttffffff	chr6:7581116-7581423(+)$1	307	206	228	21.6012
fffffuuuuuuuuuuuufffff	chr14:31637452-31637713(-)$1	261	169	191	21.2882
eeeeettttttttttteeeee]	chr19:49994885-49995106(+)$1	221	156	178	22.9763
bbwwwwwwwwwwwwwwbb333=	chr3:184044213-184044515(+)$1	302	75	97	18.1194
"ddddtttttttttttdddd33	chr1:156713841-156714162(-)$1	321	62	84	22.6447
cc[cccssssssssssccc]cc	chr6:32945944-32946196(+)$1	252	229	251	14.8991
eeeeettttttttttteeeeeF	chr21:34143592-34143958(-)$1	366	260	282	22.5908
eeeeeeettttttttttteeee	chr2:27656176-27656451(+)$1	275	252	274	18.5776
gggggtttttttttttgggggg	chr8:99057105-99057389(-)$1	284	85	107	22.0884
"""bbwwwwwwwwwwwwwwbb6	chr3:195802067-195802336(-)$1	269	224	246	17.7043
!!bbuuuuuuuuuuuubb333a	chr12:56510448-56510689(+)$1	241	177	199	21.0381
gggggtttttttttttgggggg	chr7:99621088-99621374(+)$1	286	152	174	22.0884
c[bbvvvvvvvvvvvvvbbccc	chr6:30545762-30546056(+)$1	294	84	106	20.1568
d[cccuuuuuuuuuuuucccdd	chr12:9258768-9258978(-)$1	210	149	171	21.9384
dddduuuuuuuuuuuudddd33	chr5:179135194-179135440(+)$1	246	120	142	21.9248
e[ccctttttttttttccc]ee	chr11:18424372-18424659(+)$1	287	245	267	22.6746
eeeevvvvvvvvvvvvveeeee	chr9:117062253-117062502(+)$1	249	215	237	21.5567
!!cccvvvvvvvvvvvvvccc3	chr17:78261587-78261869(+)$1	282	200	222	21.0618
eeeevvvvvvvvvvvvveeeee	chr14:24680591-24680908(-)$1	317	205	227	21.5567
&&ccctttttttttttccc666	chr10:120809328-120809600(-)$1	272	213	235	19.8928
d[ccctttttttttttcccddd	chr4:166300197-166300578(+)$1	381	36	58	22.4725
[eeeeesssssssssseeeee]	chr22:36684266-36684560(-)$1	294	210	232	15.4959
[dddduuuuuuuuuuuudddd]	chr17:43163775-43164096(+)$1	321	27	49	22.1747
[ddddtttttttttttdddd22	chr7:2883609-2883945(-)$1	336	247	269	22.3739
cccvvvvvvvvvvvvvccc::D	chr14:102550978-102551323(-)$1	345	0	22	17.6486
[ddddtttttttttttdddddd	chr17:27420233-27420531(-)$1	298	161	183	22.4009
ee[bbtttttttttttbbeeee	chr15:72500985-72501335(-)$1	350	13	35	22.0749
:dddduuuuuuuuuuuudddd:	chr2:120128212-120128479(+)$1	267	155	177	20.1737
eeeeettttttttttteeeee3	chr12:7024844-7025099(+)$1	255	83	105	23.0660
dd[bbtttttttttttbb]ddd	chr20:32436228-32436511(+)$1	283	100	122	21.5378
dd[bbtttttttttttbb]ddd	chr19:18392132-18392382(-)$1	250	215	237	21.5378
a[ccctttttttttttccca]=	chr16:72821480-72821761(-)$1	281	26	48	22.5199
fyyyyyyyyyyyyyyyyfffff	chr2:102472332-102472605(+)$1	273	185	207	19.6278

#otherMatches

#Seq PSSM
GGUAAAAAUCAAGGUGACCCCA	chr2:232327856-232328127(-)$1	271	103	125	20.4737
UGGCAGUUCCAGAAGAGACUCC	chr6:168352705-168352970(+)$1	265	39	61	19.9118
UGAUCAAGAUACAGGUAGGUCA	chr9:128000817-128001117(-)$1	300	235	257	19.7598
UUUUACCACACUACAAGUAGAC	chr2:232324878-232325104(-)$1	226	55	77	15.3113
UUGGAUUCCCCCCACCCCCAAG	chr21:27394055-27394278(-)$1	223	139	161	21.5567
AGGCCCAGCCACCCCAGGCCUU	chr19:932542-932796(+)$1	254	33	55	21.6012
UUCAGAAGAAAAGGAGACUGAA	chr3:47676577-47676846(-)$1	269	7	29	21.7837
AUGGAACGCCCCAAAAUCCAAC	chr20:62624682-62624938(+)$1	256	114	136	22.0061
GGGCUGGAGGUGGAGGGGCCCG	chr18:11981530-11981808(+)$1	278	105	127	22.6510
UUUUGUUAGGAAAAAAUUGAAA	chr9:127998786-127999066(-)$1	280	244	266	21.2882
ACAGCAGAAAAAGAUGAGUUGU	chr9:127998866-127999181(-)$1	315	287	309	21.2882
CUCCCACAGCACAUCAGGGAGG	chr17:76799544-76799923(-)$1	379	131	153	21.9309
UGUCUGAAACCUACUCUGAGGC	chr14:73577438-73577804(+)$1	366	241	263	20.2254
AUGGACAAUAUGCUCAUCCAGA	chr4:6642561-6642843(+)$1	282	205	227	22.3533
CAGGUCCAAAUGAAAAGCCUUU	chr10:103558678-103558962(-)$1	284	173	195	22.3739
CACCGUCCCGCCCACAGGUGUC	chr17:79827603-79827920(-)$1	317	70	92	20.7128
guCAGAUCUUUUAACCCAUGAC	chr7:5396705-5396952(-)$1	247	6	28	19.6006
uagaggaguuggagagaaggcg	chr2:102472472-102472703(+)$1	231	45	67	19.6278
GGGUGAAAUCCGAGUGCGCCCC	chr17:27003135-27003439(+)$1	304	159	181	22.1207
UGGAGGACCUUAUGAGCUCCAA	chr22:36685104-36685350(-)$1	246	179	201	22.9736
CGGCAGCAGAGGGACGUGCUGG	chr6:7581116-7581423(+)$1	307	206	228	21.6012
UUUGCACAAACAUUUCAGCAAA	chr14:31637452-31637713(-)$1	261	169	191	21.2882
GGUCCUCAAGACCCACGGACUC	chr19:49994885-49995106(+)$1	221	156	178	22.9763
GAUUCUACUCCCCUUUUCUUCU	chr3:184044213-184044515(+)$1	302	75	97	18.1194
AGCCCGAAGCUGCAGAGGGUGA	chr1:156713841-156714162(-)$1	321	62	84	22.6447
GAGUAGGAAGCAGAGACUAGUU	chr6:32945944-32946196(+)$1	252	229	251	14.8991
GCCUCGCGAGAACAAAGAGGUG	chr21:34143592-34143958(-)$1	366	260	282	22.5908
GCCAACCAAACUUCAAUAGGUU	chr2:27656176-27656451(+)$1	275	252	274	18.5776
GAGUCGAUCAACUCUAGGCUCC	chr8:99057105-99057389(-)$1	284	85	107	22.0884
AAAGGCCAAUGUCACAAAACCA	chr3:195802067-195802336(-)$1	269	224	246	17.7043
GAGUAGUAGCGAGGAGACGAAG	chr12:56510448-56510689(+)$1	241	177	199	21.0381
UGGGGGCAGGAUUCCACCCUAC	chr7:99621088-99621374(+)$1	286	152	174	22.0884
CAGCAGCAAAAAAAAAAGCGAG	chr6:30545762-30546056(+)$1	294	84	106	20.1568
GGAGUAUUUUCCAGUUCACUCA	chr12:9258768-9258978(-)$1	210	149	171	21.9384
AGCAUCAUGCCAUCUCUGCUAA	chr5:179135194-179135440(+)$1	246	120	142	21.9248
CAUUAUAUUAUUCAAUUAGAGC	chr11:18424372-18424659(+)$1	287	245	267	22.6746
ucauucaacaaauauuuaugga	chr9:117062253-117062502(+)$1	249	215	237	21.5567
CAGCCGAGCCAGCCCCCAGGCA	chr17:78261587-78261869(+)$1	282	200	222	21.0618
AUUGAGAAUGCCACUACCAAUG	chr14:24680591-24680908(-)$1	317	205	227	21.5567
GAGUUGGAAAUUGAAGAACGAG	chr10:120809328-120809600(-)$1	272	213	235	19.8928
CAGCCGGGGAAGGUGAGGCGAG	chr4:166300197-166300578(+)$1	381	36	58	22.4725
ACUCGGCCAACAAGAACCGGGA	chr22:36684266-36684560(-)$1	294	210	232	15.4959
CUUGAACUCAUAAUUAAUCAAA	chr17:43163775-43164096(+)$1	321	27	49	22.1747
AGCGCGAGGCCCGGAGGCGUAG	chr7:2883609-2883945(-)$1	336	247	269	22.3739
CGUGAUAAAGAAGUAAGCGAUG	chr14:102550978-102551323(-)$1	345	0	22	17.6486
GAGGGCAAGCUCGCCACCCUCA	chr17:27420233-27420531(-)$1	298	161	183	22.4009
CCAGCUCACUGUCCUUGCGGGA	chr15:72500985-72501335(-)$1	350	13	35	22.0749
UGAGCUGAAAGGUAAUUGUUCU	chr2:120128212-120128479(+)$1	267	155	177	20.1737
AGGCUCCACCCCUCUAAGCCUC	chr12:7024844-7025099(+)$1	255	83	105	23.0660
GACGGCACAUUAUCAACCAUCG	chr20:32436228-32436511(+)$1	283	100	122	21.5378
GCAUGAUGAAGAAGGACGCGCU	chr19:18392132-18392382(-)$1	250	215	237	21.5378
GAGGAGCCACCUGAAGUCCCUC	chr16:72821480-72821761(-)$1	281	26	48	22.5199
uagaggaguuggagagaaggcg	chr2:102472332-102472605(+)$1	273	185	207	19.6278

#DB
(((.............)))(((	chr2:232327856-232328127(-)$1	1	103	125	20.4737
(................)))))	chr6:168352705-168352970(+)$1	1	39	61	19.9118
(((((............)))))	chr9:128000817-128001117(-)$1	1	235	257	19.7598
((((((..........))))).	chr2:232324878-232325104(-)$1	1	55	77	15.3113
((((.............)))))	chr21:27394055-27394278(-)$1	1	139	161	21.5567
(((((...........))))))	chr19:932542-932796(+)$1	1	33	55	21.6012
(((((............)))))	chr3:47676577-47676846(-)$1	1	7	29	21.7837
.((((...........))))))	chr20:62624682-62624938(+)$1	1	114	136	22.0061
(((((...........)))))(	chr18:11981530-11981808(+)$1	1	105	127	22.6510
(((((............)))))	chr9:127998786-127999066(-)$1	1	244	266	21.2882
(((((............)))))	chr9:127998866-127999181(-)$1	1	287	309	21.2882
(((((...........))))))	chr17:76799544-76799923(-)$1	1	131	153	21.9309
(................)))))	chr14:73577438-73577804(+)$1	1	241	263	20.2254
.((((...........))))..	chr4:6642561-6642843(+)$1	1	205	227	22.3533
.((((...........))))..	chr10:103558678-103558962(-)$1	1	173	195	22.3739
((((............))))))	chr17:79827603-79827920(-)$1	1	70	92	20.7128
((((..............))))	chr7:5396705-5396952(-)$1	1	6	28	19.6006
(................)))))	chr2:102472472-102472703(+)$1	1	45	67	19.6278
(((((...........))))).	chr17:27003135-27003439(+)$1	1	159	181	22.1207
(((((...........))))).	chr22:36685104-36685350(-)$1	1	179	201	22.9736
(((((...........))))))	chr6:7581116-7581423(+)$1	1	206	228	21.6012
(((((............)))))	chr14:31637452-31637713(-)$1	1	169	191	21.2882
(((((...........))))).	chr19:49994885-49995106(+)$1	1	156	178	22.9763
((..............))...)	chr3:184044213-184044515(+)$1	1	75	97	18.1194
.((((...........))))..	chr1:156713841-156714162(-)$1	1	62	84	22.6447
((.(((..........))).))	chr6:32945944-32946196(+)$1	1	229	251	14.8991
(((((...........))))))	chr21:34143592-34143958(-)$1	1	260	282	22.5908
))(((((...........))))	chr2:27656176-27656451(+)$1	1	252	274	18.5776
(((((...........))))))	chr8:99057105-99057389(-)$1	1	85	107	22.0884
...((..............)).	chr3:195802067-195802336(-)$1	1	224	246	17.7043
..((............))...)	chr12:56510448-56510689(+)$1	1	177	199	21.0381
(((((...........))))))	chr7:99621088-99621374(+)$1	1	152	174	22.0884
(.((.............)))))	chr6:30545762-30546056(+)$1	1	84	106	20.1568
(.(((............)))))	chr12:9258768-9258978(-)$1	1	149	171	21.9384
((((............))))..	chr5:179135194-179135440(+)$1	1	120	142	21.9248
(.(((...........))).))	chr11:18424372-18424659(+)$1	1	245	267	22.6746
((((.............)))))	chr9:117062253-117062502(+)$1	1	215	237	21.5567
..(((.............))).	chr17:78261587-78261869(+)$1	1	200	222	21.0618
((((.............)))))	chr14:24680591-24680908(-)$1	1	205	227	21.5567
..(((...........)))...	chr10:120809328-120809600(-)$1	1	213	235	19.8928
(.(((...........))))))	chr4:166300197-166300578(+)$1	1	36	58	22.4725
.(((((..........))))).	chr22:36684266-36684560(-)$1	1	210	232	15.4959
.((((............)))).	chr17:43163775-43164096(+)$1	1	27	49	22.1747
.((((...........))))..	chr7:2883609-2883945(-)$1	1	247	269	22.3739
(((.............)))..(	chr14:102550978-102551323(-)$1	1	0	22	17.6486
.((((...........))))))	chr17:27420233-27420531(-)$1	1	161	183	22.4009
((.((...........))))))	chr15:72500985-72501335(-)$1	1	13	35	22.0749
.((((............)))).	chr2:120128212-120128479(+)$1	1	155	177	20.1737
(((((...........))))).	chr12:7024844-7025099(+)$1	1	83	105	23.0660
((.((...........)).)))	chr20:32436228-32436511(+)$1	1	100	122	21.5378
((.((...........)).)))	chr19:18392132-18392382(-)$1	1	215	237	21.5378
(.(((...........)))).)	chr16:72821480-72821761(-)$1	1	26	48	22.5199
(................)))))	chr2:102472332-102472605(+)$1	1	185	207	19.6278

#PSSM
e : 0.28	f : 0.13	d : 0.13	[ : 0.11	c : 0.07	g : 0.07	! : 0.05	" : 0.03	h : 0.01	b : 0.01	& : 0.01	: : 0.01	a : 0.01	
e : 0.26	d : 0.24	f : 0.09	[ : 0.09	y : 0.07	c : 0.05	g : 0.05	! : 0.03	h : 0.01	b : 0.01	" : 0.01	& : 0.01	
e : 0.24	d : 0.20	c : 0.15	f : 0.09	y : 0.07	[ : 0.07	g : 0.05	b : 0.03	h : 0.01	w : 0.01	" : 0.01	
e : 0.24	d : 0.20	c : 0.13	b : 0.11	f : 0.09	y : 0.07	g : 0.05	v : 0.03	h : 0.01	w : 0.01	
e : 0.18	d : 0.15	c : 0.13	v : 0.11	f : 0.09	y : 0.07	b : 0.07	g : 0.05	u : 0.05	w : 0.03	h : 0.01	
t : 0.45	u : 0.20	v : 0.13	y : 0.07	e : 0.05	w : 0.05	c : 0.01	
t : 0.45	u : 0.20	v : 0.13	y : 0.07	s : 0.05	w : 0.05	e : 0.01	
t : 0.47	u : 0.20	v : 0.13	y : 0.07	s : 0.05	w : 0.05	
t : 0.47	u : 0.20	v : 0.13	y : 0.07	s : 0.05	w : 0.05	
t : 0.47	u : 0.20	v : 0.13	y : 0.07	s : 0.05	w : 0.05	
t : 0.47	u : 0.20	v : 0.13	y : 0.07	s : 0.05	w : 0.05	
t : 0.47	u : 0.20	v : 0.13	y : 0.07	s : 0.05	w : 0.05	
t : 0.47	u : 0.20	v : 0.13	y : 0.07	s : 0.05	w : 0.05	
t : 0.47	u : 0.20	v : 0.13	y : 0.07	s : 0.05	w : 0.05	
t : 0.47	u : 0.20	v : 0.13	y : 0.07	s : 0.05	w : 0.05	
t : 0.47	u : 0.20	v : 0.13	y : 0.07	s : 0.05	w : 0.05	
e : 0.16	u : 0.15	d : 0.15	c : 0.13	v : 0.09	b : 0.09	y : 0.07	f : 0.03	w : 0.03	g : 0.03	t : 0.01	
e : 0.24	d : 0.18	c : 0.15	f : 0.13	b : 0.11	g : 0.07	w : 0.03	h : 0.01	t : 0.01	v : 0.01	
e : 0.28	d : 0.20	c : 0.16	f : 0.13	g : 0.07	3 : 0.03	] : 0.03	h : 0.01	w : 0.01	b : 0.01	
e : 0.28	d : 0.26	f : 0.13	c : 0.07	g : 0.07	3 : 0.03	] : 0.03	h : 0.01	b : 0.01	6 : 0.01	: : 0.01	a : 0.01	
e : 0.30	d : 0.15	f : 0.13	c : 0.07	g : 0.07	3 : 0.07	2 : 0.05	b : 0.03	h : 0.01	G : 0.01	6 : 0.01	: : 0.01	] : 0.01	
e : 0.13	f : 0.13	d : 0.11	g : 0.07	2 : 0.07	3 : 0.07	c : 0.05	] : 0.05	b : 0.03	: : 0.03	= : 0.03	6 : 0.03	h : 0.01	C : 0.01	G : 0.01	4 : 0.01	F : 0.01	a : 0.01	D : 0.01	

#score	1109.0369223965115
#seq	53
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_UTR_m2_run2.txt

#BEAR
ggggggg[bboooooobb]gggg	chr18:9254484-9254726(+)$1	242	63	86	13.4755
d[ffffffbboooooobb]ffff	chr3:121415959-121416246(-)$1	287	165	188	12.2961
f:dddd!!bboooooobb333dd	chr6:56417930-56418167(-)$1	237	110	133	11.8792
fffff!!cccoooooocccffff	chr2:47747667-47747935(+)$1	268	57	80	12.3784
bbccc!!cccooooooccc22cc	chr8:25269131-25269363(+)$1	232	157	180	12.6348
:::gggggggooooooggggggg	chr10:38409726-38410036(+)$1	310	194	217	10.2717
eeeee!!cccooooooccc333e	chr7:99635031-99635267(+)$1	236	22	45	13.0256
!!eeeeecccooooooccc]eee	chr21:40568994-40569262(-)$1	268	141	164	13.0857
iiiiii!!bboooooobb]iiii	chr15:59172086-59172340(+)$1	254	175	198	13.7016
ccc[bb!!bboooooobbbbccc	chr17:27591445-27591706(-)$1	261	139	162	11.9914
ffffff[cccooooooccc]fff	chr17:65343160-65343467(-)$1	307	101	124	12.4616
dd[eeeee[aooooooa]eeeee	chr16:24802557-24802842(+)$1	285	67	90	12.0644
ddd"""ddddoooooodddd333	chr3:42679887-42680133(+)$1	246	36	59	11.0110
ccffffffbboooooobb]ffff	chr2:190728449-190728711(+)$1	262	141	164	12.2672
##eeeee!!aooooooa22eeee	chr16:89350300-89350663(-)$1	363	37	60	12.4466
[a[gggggggooooooggggggg	chr1:203766230-203766488(+)$1	258	72	95	13.0775
ddd"""ddddoooooodddd333	chr3:42679680-42679990(+)$1	310	243	266	11.0110
iiiiiiiiiooooooiiiiiiii	chr9:117073666-117073897(+)$1	231	30	53	11.7283
eeeeaeeeeeooooooeeeee]a	chr1:155451290-155451566(-)$1	276	61	84	10.9867
dd!!eeeeeaooooooa]eeeee	chr7:132973595-132973879(+)$1	284	255	278	11.9970
eeee!!ddddoooooodddd444	chr6:56417312-56417574(-)$1	262	78	101	10.9794
cc[ccc[cccooooooccc]ccc	chr6:111689104-111689330(-)$1	226	53	76	13.2534
a!!ddddcccooooooccc]ddd	chr17:65821707-65821989(+)$1	282	228	251	12.4356
[ccc"""cccooooooccc333c	chr7:99634870-99635097(+)$1	227	170	193	13.1476
[ffffff!!aooooooa22ffff	chr19:53115633-53115881(-)$1	248	101	124	11.9058
ggggggg[bboooooobbggggg	chr10:120795397-120795619(-)$1	222	65	88	13.3726
bb[bbeeeeeooooooeeeee]b	chr1:19444287-19444504(-)$1	217	56	79	10.2930
ddd[ddddbboooooobb22ddd	chr22:22324547-22324820(-)$1	273	43	66	11.7360
hhhhh!!cccooooooccc22hh	chr3:123665975-123666255(-)$1	280	46	69	11.9597
iiiiiiiiiooooooiiiiiiii	chr6:86299108-86299387(-)$1	279	3	26	11.7283
==========nnnnn========	chr12:133500916-133501184(-)$1	268	233	256	8.8519
##eeeee[bboooooobb]eeee	chr22:36906828-36907129(-)$1	301	147	170	12.9924
cccccc!!bboooooobb22ccc	chr8:494741-495023(-)$1	282	223	246	13.0925
!iiiiiiiiiooooooiiiiiii	chr6:64422270-64422521(+)$1	251	113	136	13.2360
c!!dddd[bboooooobb]dddd	chr17:66422009-66422269(+)$1	260	12	35	12.3618
:eeeee[cccooooooccceeee	chr3:9489368-9489643(+)$1	275	59	82	11.7748
""bb[ddddaooooooa]dddd]	chr3:42680422-42680726(+)$1	304	112	135	11.3390
e!!ccc!!bboooooobb22ccc	chr8:82598417-82598681(-)$1	264	66	89	13.2279
##ffffff[aooooooa]fffff	chr12:133500991-133501270(-)$1	279	237	260	12.1065
:::gggggggooooooggggggg	chr17:4575904-4576139(-)$1	235	142	165	10.2717
ffccc!!cccooooooccc22cc	chr3:184101218-184101522(+)$1	304	119	142	12.7040
iiiiiiii[aooooooa]iiiii	chr14:31818985-31819281(-)$1	296	234	257	13.2710
g::gggggggooooooggggggg	chr5:130857046-130857314(-)$1	268	68	91	11.1334
c[hhhhhhhhoooooohhhhhhh	chr10:103901169-103901405(+)$1	236	30	53	10.7388
dbb[ffffffooooooffffffb	chr9:95047999-95048219(-)$1	220	80	103	10.8594
dd!!ffffffooooooffffff4	chr19:5612322-5612607(-)$1	285	253	276	11.4268
b[eeeee[bboooooobb]eeee	chrX:106045887-106046278(+)$1	391	86	109	12.7473
ggg[ccc[bboooooobb]ccc]	chr5:79732713-79732951(+)$1	238	25	48	13.0756
eee[bb[cccooooooccc]bb]	chr6:86298903-86299160(-)$1	257	102	125	11.8771
ccc[ffffffooooooffffff2	chr16:8722628-8722870(+)$1	242	189	212	11.4545
ggcccccc[bboooooobb]ccc	chr17:42477774-42478016(-)$1	242	78	101	10.5959
$$ddddddddoooooodddd]dd	chr2:109087822-109088108(+)$1	286	188	211	10.4759
##dddd!!bboooooobb22ddd	chr19:21366744-21366988(+)$1	244	77	100	12.4649
iiiiiiii[annnnnaiiiiiii	chr11:57076744-57077005(-)$1	261	72	95	8.7799
!!eeeeecccooooooccc]eee	chr21:40568861-40569179(-)$1	318	58	81	13.0857
A::gggggggooooooggggggg	chr6:87964390-87964597(+)$1	207	17	40	10.3434

#otherMatches

#Seq PSSM
GUUCUGAUGAAGAAGCUCUUCAG	chr18:9254484-9254726(+)$1	242	63	86	13.4755
GCUCUGGUCAAACAGAUGAAUCA	chr3:121415959-121416246(-)$1	287	165	188	12.2961
UCUGGCCAUGGAUAGACAAAUGC	chr6:56417930-56418167(-)$1	237	110	133	11.8792
GGUUUAGUGCCAGUCUGCAAAAC	chr2:47747667-47747935(+)$1	268	57	80	12.3784
UAUCAAGUACACUUUGGUAGCUG	chr8:25269131-25269363(+)$1	232	157	180	12.6348
AUUGGUUGUGCCUUGUCACAACU	chr10:38409726-38410036(+)$1	310	194	217	10.2717
GCAUAAAAGUGAAACUGCUAAAU	chr7:99635031-99635267(+)$1	236	22	45	13.0256
AAAUGGAAGGAAAAAACCUCUCC	chr21:40568994-40569262(-)$1	268	141	164	13.0857
GAAUUGCCACUGAUUUGUACAAU	chr15:59172086-59172340(+)$1	254	175	198	13.7016
CAGAUCAAUGAAGGACCAGACUG	chr17:27591445-27591706(-)$1	261	139	162	11.9914
AAAUUAAAGUUGAAGUACUAUAA	chr17:65343160-65343467(-)$1	307	101	124	12.4616
AACGAACUUGGUAAAACUAGUUC	chr16:24802557-24802842(+)$1	285	67	90	12.0644
GAAGAAGGUGAGGCCACAUCCGA	chr3:42679887-42680133(+)$1	246	36	59	11.0110
GGAAUUUGGCCCAGAAGCACAAG	chr2:190728449-190728711(+)$1	262	141	164	12.2672
AAUUAGAGAAGAAGAAUGAUUUA	chr16:89350300-89350663(-)$1	363	37	60	12.4466
gauuuggaagaccuggcuucuag	chr1:203766230-203766488(+)$1	258	72	95	13.0775
GAAGAAGGUGAGGCCACAUCCGA	chr3:42679680-42679990(+)$1	310	243	266	11.0110
GGAUGUGGGGCAUCAUCCGCAUC	chr9:117073666-117073897(+)$1	231	30	53	11.7283
GACUGUGCAAAGAAGAUUGUAGC	chr1:155451290-155451566(-)$1	276	61	84	10.9867
UCAGUGCCACUGACAUGUUGGUA	chr7:132973595-132973879(+)$1	284	255	278	11.9970
CACUAAGUCAGCAGGUUGAUGAA	chr6:56417312-56417574(-)$1	262	78	101	10.9794
AUUGCUCUUUGAAACAAAACAGU	chr6:111689104-111689330(-)$1	226	53	76	13.2534
GUCCGGACCCAUCGGGGGGCUCC	chr17:65821707-65821989(+)$1	282	228	251	12.4356
CUUAAUAUUAAAGGCAUAAAAGU	chr7:99634870-99635097(+)$1	227	170	193	13.1476
CAUGCUUAAGCUUUUACCCAGGC	chr19:53115633-53115881(-)$1	248	101	124	11.9058
UUAAGUCUCAAGAUAAUGGAUUU	chr10:120795397-120795619(-)$1	222	65	88	13.3726
CUAAGAUGAAAAUGUGUUCAUGC	chr1:19444287-19444504(-)$1	217	56	79	10.2930
UUCUUGAUGCUGUUCUGCCCGUC	chr22:22324547-22324820(-)$1	273	43	66	11.7360
UGAGUGCUCAUACUUCUGAAGAC	chr3:123665975-123666255(-)$1	280	46	69	11.9597
aaggucuuucagcauaaggaucu	chr6:86299108-86299387(-)$1	279	3	26	11.7283
gcugggaauaguuuauguucuca	chr12:133500916-133501184(-)$1	268	233	256	8.8519
UUGAUGCUUAGUGGAAUGUGUGU	chr22:36906828-36907129(-)$1	301	147	170	12.9924
CAGCCCGACGCACGGACGGAGGG	chr8:494741-495023(-)$1	282	223	246	13.0925
AACCUUGUUGCUAAUACAGCGAG	chr6:64422270-64422521(+)$1	251	113	136	13.2360
ACACCUAAAGCCUACUCUGUAGG	chr17:66422009-66422269(+)$1	260	12	35	12.3618
GGCCGAAGAGUCGAAUUUCUCGG	chr3:9489368-9489643(+)$1	275	59	82	11.7748
AAGUGUUCCCAAUGGAGUGGAAG	chr3:42680422-42680726(+)$1	304	112	135	11.3390
CAACCACGCCCCCUCAGGAAUGG	chr8:82598417-82598681(-)$1	264	66	89	13.2279
gacuuaguacugacuugcacuga	chr12:133500991-133501270(-)$1	279	237	260	12.1065
AGCCUUUGUCCACUAUGACAAGG	chr17:4575904-4576139(-)$1	235	142	165	10.2717
GUGGUGGCCAUGACACUGGAGAC	chr3:184101218-184101522(+)$1	304	119	142	12.7040
GUGGUAGAUGAUGGAGCUUUUAC	chr14:31818985-31819281(-)$1	296	234	257	13.2710
UUUAGAAUAACUUAAAUUAUUUU	chr5:130857046-130857314(-)$1	268	68	91	11.1334
UAUGGGCCCUUGGGAUGGGGCCC	chr10:103901169-103901405(+)$1	236	30	53	10.7388
AACUCCAUCUCUUACCAGGUGGG	chr9:95047999-95048219(-)$1	220	80	103	10.8594
CAAAUACAUUUGGUGCAAUGUAG	chr19:5612322-5612607(-)$1	285	253	276	11.4268
UGUCGCCUGAGGAAGAUUUGGUG	chrX:106045887-106046278(+)$1	391	86	109	12.7473
UCCCUGAAUGAAAAAACACUCAA	chr5:79732713-79732951(+)$1	238	25	48	13.0756
gcugagguggggaagaucaguug	chr6:86298903-86299160(-)$1	257	102	125	11.8771
UGGACGUGGUGAGAAGACCACGA	chr16:8722628-8722870(+)$1	242	189	212	11.4545
UCAGAGACCCAAAUGUGUGAGUC	chr17:42477774-42478016(-)$1	242	78	101	10.5959
UAAACUGCUUGAAAAUGAGCAAG	chr2:109087822-109088108(+)$1	286	188	211	10.4759
GUGGGAAAGCCUUUAAGCAGUCC	chr19:21366744-21366988(+)$1	244	77	100	12.4649
AGGCUGGGUCGGUGAGUUUAGCC	chr11:57076744-57077005(-)$1	261	72	95	8.7799
AAAUGGAAGGAAAAAACCUCUCC	chr21:40568861-40569179(-)$1	318	58	81	13.0857
UAAAGGCUCUUCGCUUGGAGUCU	chr6:87964390-87964597(+)$1	207	17	40	10.3434

#DB
(((((((.((......)).))))	chr18:9254484-9254726(+)$1	1	63	86	13.4755
(.((((((((......)).))))	chr3:121415959-121416246(-)$1	1	165	188	12.2961
).((((..((......))...))	chr6:56417930-56418167(-)$1	1	110	133	11.8792
(((((..(((......)))))))	chr2:47747667-47747935(+)$1	1	57	80	12.3784
(((((..(((......)))..))	chr8:25269131-25269363(+)$1	1	157	180	12.6348
...(((((((......)))))))	chr10:38409726-38410036(+)$1	1	194	217	10.2717
(((((..(((......)))...)	chr7:99635031-99635267(+)$1	1	22	45	13.0256
..((((((((......))).)))	chr21:40568994-40569262(-)$1	1	141	164	13.0857
((((((..((......)).))))	chr15:59172086-59172340(+)$1	1	175	198	13.7016
(((.((..((......)))))))	chr17:27591445-27591706(-)$1	1	139	162	11.9914
((((((.(((......))).)))	chr17:65343160-65343467(-)$1	1	101	124	12.4616
((.(((((.(......).)))))	chr16:24802557-24802842(+)$1	1	67	90	12.0644
(((...((((......))))...	chr3:42679887-42680133(+)$1	1	36	59	11.0110
))((((((((......)).))))	chr2:190728449-190728711(+)$1	1	141	164	12.2672
..(((((..(......)..))))	chr16:89350300-89350663(-)$1	1	37	60	12.4466
.(.(((((((......)))))))	chr1:203766230-203766488(+)$1	1	72	95	13.0775
(((...((((......))))...	chr3:42679680-42679990(+)$1	1	243	266	11.0110
(((((((((......))))))))	chr9:117073666-117073897(+)$1	1	30	53	11.7283
((((((((((......))))).)	chr1:155451290-155451566(-)$1	1	61	84	10.9867
((..((((((......).)))))	chr7:132973595-132973879(+)$1	1	255	278	11.9970
((((..((((......))))...	chr6:56417312-56417574(-)$1	1	78	101	10.9794
((.(((.(((......))).)))	chr6:111689104-111689330(-)$1	1	53	76	13.2534
(..(((((((......))).)))	chr17:65821707-65821989(+)$1	1	228	251	12.4356
.(((...(((......)))...)	chr7:99634870-99635097(+)$1	1	170	193	13.1476
.((((((..(......)..))))	chr19:53115633-53115881(-)$1	1	101	124	11.9058
(((((((.((......)))))))	chr10:120795397-120795619(-)$1	1	65	88	13.3726
((.(((((((......))))).)	chr1:19444287-19444504(-)$1	1	56	79	10.2930
(((.((((((......))..)))	chr22:22324547-22324820(-)$1	1	43	66	11.7360
(((((..(((......)))..))	chr3:123665975-123666255(-)$1	1	46	69	11.9597
(((((((((......))))))))	chr6:86299108-86299387(-)$1	1	3	26	11.7283
((((((((((.....))))))))	chr12:133500916-133501184(-)$1	1	233	256	8.8519
..(((((.((......)).))))	chr22:36906828-36907129(-)$1	1	147	170	12.9924
)))(((..((......))..)))	chr8:494741-495023(-)$1	1	223	246	13.0925
.(((((((((......)))))))	chr6:64422270-64422521(+)$1	1	113	136	13.2360
(..((((.((......)).))))	chr17:66422009-66422269(+)$1	1	12	35	12.3618
.(((((.(((......)))))))	chr3:9489368-9489643(+)$1	1	59	82	11.7748
..((.(((((......).)))).	chr3:42680422-42680726(+)$1	1	112	135	11.3390
(..(((..((......))..)))	chr8:82598417-82598681(-)$1	1	66	89	13.2279
..((((((.(......).)))))	chr12:133500991-133501270(-)$1	1	237	260	12.1065
...(((((((......)))))))	chr17:4575904-4576139(-)$1	1	142	165	10.2717
(((((..(((......)))..))	chr3:184101218-184101522(+)$1	1	119	142	12.7040
((((((((.(......).)))))	chr14:31818985-31819281(-)$1	1	234	257	13.2710
)..(((((((......)))))))	chr5:130857046-130857314(-)$1	1	68	91	11.1334
(.((((((((......)))))))	chr10:103901169-103901405(+)$1	1	30	53	10.7388
(((.((((((......)))))))	chr9:95047999-95048219(-)$1	1	80	103	10.8594
((..((((((......)))))).	chr19:5612322-5612607(-)$1	1	253	276	11.4268
(.(((((.((......)).))))	chrX:106045887-106046278(+)$1	1	86	109	12.7473
(((.(((.((......)).))).	chr5:79732713-79732951(+)$1	1	25	48	13.0756
(((.((.(((......))).)).	chr6:86298903-86299160(-)$1	1	102	125	11.8771
(((.((((((......)))))).	chr16:8722628-8722870(+)$1	1	189	212	11.4545
((((((((.((......)).)))	chr17:42477774-42478016(-)$1	1	78	101	10.5959
..((((((((......)))).))	chr2:109087822-109088108(+)$1	1	188	211	10.4759
..((((..((......))..)))	chr19:21366744-21366988(+)$1	1	77	100	12.4649
((((((((.(.....))))))))	chr11:57076744-57077005(-)$1	1	72	95	8.7799
..((((((((......))).)))	chr21:40568861-40569179(-)$1	1	58	81	13.0857
(..(((((((......)))))))	chr6:87964390-87964597(+)$1	1	17	40	10.3434

#PSSM
d : 0.14	c : 0.12	g : 0.08	e : 0.08	i : 0.08	f : 0.07	# : 0.07	b : 0.05	: : 0.05	! : 0.05	[ : 0.05	a : 0.01	h : 0.01	= : 0.01	" : 0.01	$ : 0.01	A : 0.01	
i : 0.10	c : 0.10	d : 0.10	: : 0.08	e : 0.08	! : 0.08	g : 0.07	f : 0.07	# : 0.07	[ : 0.05	b : 0.05	a : 0.01	h : 0.01	= : 0.01	" : 0.01	$ : 0.01	
e : 0.17	c : 0.12	f : 0.10	d : 0.10	i : 0.10	! : 0.08	: : 0.07	[ : 0.07	g : 0.05	h : 0.03	b : 0.03	= : 0.01	
e : 0.17	g : 0.12	c : 0.12	f : 0.10	i : 0.10	[ : 0.10	d : 0.08	" : 0.03	! : 0.03	b : 0.03	h : 0.03	= : 0.01	
f : 0.16	e : 0.16	g : 0.12	c : 0.12	d : 0.10	i : 0.10	b : 0.05	" : 0.05	h : 0.03	a : 0.01	! : 0.01	= : 0.01	[ : 0.01	
e : 0.17	f : 0.14	g : 0.12	d : 0.12	! : 0.10	i : 0.10	c : 0.08	" : 0.05	b : 0.03	= : 0.01	h : 0.01	
! : 0.19	e : 0.16	d : 0.14	g : 0.12	f : 0.12	i : 0.08	[ : 0.07	c : 0.03	" : 0.01	= : 0.01	h : 0.01	
c : 0.24	! : 0.14	[ : 0.10	f : 0.10	d : 0.10	g : 0.08	i : 0.08	e : 0.07	= : 0.01	h : 0.01	
b : 0.26	c : 0.23	g : 0.08	[ : 0.08	d : 0.08	i : 0.05	e : 0.05	f : 0.05	! : 0.03	= : 0.01	h : 0.01	
b : 0.28	c : 0.23	a : 0.14	g : 0.08	d : 0.07	f : 0.05	o : 0.03	e : 0.03	= : 0.01	i : 0.01	h : 0.01	
o : 0.94	n : 0.03	b : 0.01	
o : 0.96	n : 0.03	
o : 0.96	n : 0.03	
o : 0.96	n : 0.03	
o : 0.96	n : 0.03	
o : 0.92	i : 0.03	= : 0.01	a : 0.01	
b : 0.26	c : 0.23	a : 0.12	g : 0.08	d : 0.07	i : 0.07	f : 0.05	e : 0.03	= : 0.01	h : 0.01	o : 0.01	
b : 0.28	c : 0.23	g : 0.08	] : 0.08	d : 0.07	i : 0.07	f : 0.05	2 : 0.03	e : 0.03	= : 0.01	h : 0.01	
c : 0.23	] : 0.14	g : 0.10	2 : 0.10	d : 0.08	i : 0.08	e : 0.07	f : 0.07	b : 0.03	3 : 0.01	= : 0.01	h : 0.01	
f : 0.14	e : 0.14	g : 0.12	2 : 0.12	] : 0.12	i : 0.10	d : 0.10	3 : 0.05	b : 0.01	= : 0.01	h : 0.01	c : 0.01	
e : 0.17	f : 0.16	g : 0.12	i : 0.10	c : 0.10	3 : 0.08	d : 0.08	2 : 0.05	4 : 0.01	= : 0.01	h : 0.01	b : 0.01	] : 0.01	
f : 0.16	c : 0.14	e : 0.14	g : 0.12	d : 0.12	i : 0.10	3 : 0.07	] : 0.03	h : 0.03	4 : 0.01	= : 0.01	b : 0.01	
e : 0.16	c : 0.14	g : 0.12	f : 0.10	d : 0.10	i : 0.10	] : 0.05	3 : 0.03	4 : 0.03	b : 0.03	h : 0.03	a : 0.01	= : 0.01	2 : 0.01	

#score	668.8932268601343
#seq	56
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_UTR_m1_run1.txt

#BEAR
eeeeevvvvvvvvvvvvveeeee333a	chr8:101533248-101533559(-)$1	311	89	116	22.7668
hhhhhhhuuuuuuuuuuuuhhhhhhhh	chr16:15504488-15504758(+)$1	270	161	188	22.3388
ggggggguuuuuuuuuuuuggggggg2	chr10:124817492-124817722(+)$1	230	183	210	24.8257
heeeeewwwwwwwwwwwwwweeeee]h	chr2:228681873-228682101(+)$1	228	93	120	22.1726
a!!dddduuuuuuuuuuuudddd22a2	chr14:62214798-62215042(+)$1	244	84	111	23.0637
iiiiiiuuuuuuuuuuuuiiiiiiiii	chr5:40760120-40760370(-)$1	250	76	103	24.0974
e[ddddauuuuuuuuuuuua]ddddee	chr1:11903006-11903265(+)$1	259	7	34	23.4625
[eeeeewwwwwwwwwwwwwweeeee]c	chr11:77375906-77376215(-)$1	309	32	59	22.5704
ffffffauuuuuuuuuuuua]ffffff	chr12:80168049-80168326(-)$1	277	24	51	23.7750
$ddddvvvvvvvvvvvvvdddd22ggg	chr15:59955039-59955360(-)$1	321	27	54	21.4158
gggggggtttttttttttggggggg]c	chr18:60245528-60245853(+)$1	325	196	223	24.8894
eeeee[auuuuuuuuuuuua]eeeee]	chr2:87000794-87001070(+)$1	276	48	75	24.5880
eee[cccuuuuuuuuuuuuccc]eeee	chr13:45967517-45967802(-)$1	285	52	79	24.0614
%fffffftttttttttttffffffccc	chr1:92147061-92147354(-)$1	293	191	218	22.6416
effffffuuuuuuuuuuuuffffff77	chr7:47316696-47316966(-)$1	270	159	186	22.3975
++eeeeettttttttttteeeee>>>>	chr19:10396378-10396657(+)$1	279	73	100	21.6781
hhhhhhhvvvvvvvvvvvvvhhhhhhh	chr7:26412223-26412506(+)$1	283	169	196	21.8530
dd[cccuuuuuuuuuuuuccc22dddd	chr2:87004737-87004976(+)$1	239	197	224	22.2425
hhhhhhhuuuuuuuuuuuuhhhhhhhh	chr1:226171063-226171328(-)$1	265	229	256	22.3388
!ffffffuuuuuuuuuuuuffffff22	chr6:7288927-7289202(-)$1	275	124	151	23.5487
ffff[bbtttttttttttbb333ffff	chr4:100544975-100545246(+)$1	271	89	116	23.1598
"ffffffuuuuuuuuuuuuffffffbb	chrX:49862781-49863041(+)$1	260	86	113	22.8525
eeeeevvvvvvvvvvvvveeeeeccce	chr3:73117576-73117826(+)$1	250	80	107	22.3482
gggggggtttttttttttggggggg]d	chr7:139790279-139790537(-)$1	258	225	252	24.7601
ddd[cccuuuuuuuuuuuucccdddd2	chr19:57322427-57322687(-)$1	260	206	233	23.1234
ffffyyyyyyyyyyyyyyyyffffff:	chr2:223807912-223808163(+)$1	251	135	162	20.7184
ggggyyyyyyyyyyyyyyyyggggggg	chr14:39501335-39501637(-)$1	302	269	296	22.6816
iiiiiiitttttttttttiiiiiiiii	chr8:125324145-125324457(-)$1	312	240	267	24.6833
iiiiiiitttttttttttiiiiiiiii	chr15:69561978-69562301(+)$1	323	127	154	24.6833
gggggggtttttttttttggggggg::	chr5:32601151-32601423(+)$1	272	203	230	22.9645
iiiiiiitttttttttttiiiiiiiii	chr15:44063593-44063834(+)$1	241	7	34	24.6833
[a[ddddtttttttttttdddd]a333	chr2:99235560-99235863(-)$1	303	6	33	23.8818
=[eeeeettttttttttteeeee====	chr2:62451011-62451278(+)$1	267	30	57	24.3802
ffff[bbtttttttttttbb]ffffff	chr6:119500590-119500846(-)$1	256	141	168	23.3002
fff[ccctttttttttttccc]fffff	chr1:179068461-179068722(-)$1	261	216	243	23.9863
ffffyyyyyyyyyyyyyyyyffffff]	chr2:86830640-86830925(-)$1	285	231	258	21.6625
gggggggvvvvvvvvvvvvvggggggg	chr6:129898479-129898779(-)$1	300	145	172	24.1693
!!eeeeewwwwwwwwwwwwwweeeee2	chr3:133875906-133876181(-)$1	275	85	112	21.9646
ggggggwwwwwwwwwwwwwwggggggg	chr5:96369792-96370017(+)$1	225	66	93	23.1018
ffffffwwwwwwwwwwwwwwffffffG	chr12:116396859-116397121(-)$1	262	194	221	21.1505
!!ddddwwwwwwwwwwwwwwdddd22b	chr3:123210368-123210603(-)$1	235	189	216	21.3584
!!eeeeeuuuuuuuuuuuueeeee444	chr5:32124932-32125171(-)$1	239	168	195	24.2128
eeee[bbtttttttttttbb]eeeee:	chr9:129647910-129648212(+)$1	302	130	157	22.9945
hhhhhhhttttttttttthhhhhhhh]	chr19:47507721-47508008(+)$1	287	202	229	22.5095
c!!ddddtttttttttttdddd4444c	chr1:92146210-92146507(-)$1	297	91	118	23.1748
gggggguuuuuuuuuuuugggggggdd	chr10:124817571-124817846(+)$1	275	105	132	23.8692
eeeeevvvvvvvvvvvvveeeee4444	chr6:47592359-47592644(+)$1	285	252	279	22.5067
eeeeccctttttttttttccc]eeeee	chr15:29992733-29993028(-)$1	295	29	56	24.2324
ff[ddddtttttttttttddddfffff	chr6:18225125-18225425(-)$1	300	81	108	23.0977
ddddyyyyyyyyyyyyyyyydddd22c	chr17:38544736-38545018(-)$1	282	84	111	20.7697
ggggbbuuuuuuuuuuuubb22ggggg	chr5:132333702-132334013(-)$1	311	39	66	22.9694
$$$$$bbtttttttttttbb4444eee	chr3:41281469-41281718(+)$1	249	138	165	21.3737
!!ccc[auuuuuuuuuuuua]ccc22d	chr3:25639527-25639797(-)$1	270	128	155	24.2298
=======ttttttttttt=========	chr6:64291107-64291333(+)$1	226	121	148	24.8217
hhhhhhhttttttttttthhhhhhhh3	chr8:22879265-22879571(-)$1	306	207	234	22.5857
eeee[bbtttttttttttbb]eeeee]	chr6:75965665-75965903(-)$1	238	124	151	23.9386
gggggggvvvvvvvvvvvvvggggggg	chr5:131527512-131527781(-)$1	269	141	168	24.1693
a!!ddddtttttttttttdddd22a22	chr2:64859745-64860012(-)$1	267	189	216	23.0339
eee[cccuuuuuuuuuuuuccceeeee	chr19:57324397-57324640(-)$1	243	136	163	24.0692
gggggggtttttttttttggggggg66	chr11:102269265-102269548(-)$1	283	21	48	24.0423
[ffffffuuuuuuuuuuuuffffff]b	chr9:123943124-123943384(-)$1	260	49	76	23.4467
=======ttttttttttt=========	chr6:64291133-64291364(+)$1	231	95	122	24.8217
##eeeeewwwwwwwwwwwwwweeeee5	chr4:88904100-88904351(+)$1	251	126	153	20.9468
!!ddddvvvvvvvvvvvvvdddd22dd	chr5:74657183-74657419(+)$1	236	27	54	22.4280
hhhhhhhttttttttttthhhhhhhh2	chr5:133936753-133937052(-)$1	299	107	134	22.4120

#otherMatches

#Seq PSSM
AUGCUUUAGAAUAGAAUUGGUAUUUCU	chr8:101533248-101533559(-)$1	311	89	116	22.7668
UGUAAAAGGCAUUAAUAUAUUUUACAU	chr16:15504488-15504758(+)$1	270	161	188	22.3388
UUUUGCUGAUCUUUCAUAAAGCAGAAU	chr10:124817492-124817722(+)$1	230	183	210	24.8257
GCUUUGUUUAAGCAUCACAUUAAAGUU	chr2:228681873-228682101(+)$1	228	93	120	22.1726
GUACAAAUUUUUCAUUCCUUUUGCUCU	chr14:62214798-62215042(+)$1	244	84	111	23.0637
ACAGAAUUUUCACAAUUUUUUUGUUGU	chr5:40760120-40760370(-)$1	250	76	103	24.0974
UCGCAGCUUCCUUUUUUCUGUUUGCAC	chr1:11903006-11903265(+)$1	259	7	34	23.4625
CAGGUAUUGCCCUUAAAUCUUAUCUUU	chr11:77375906-77376215(-)$1	309	32	59	22.5704
AACUGUCUCCUUAACCACUGAACAGUU	chr12:80168049-80168326(-)$1	277	24	51	23.7750
CAGGGGCUGCUUUUUAAACUCUCACUA	chr15:59955039-59955360(-)$1	321	27	54	21.4158
CUGGAAAGGCCACUUAUAUUUCUAGAA	chr18:60245528-60245853(+)$1	325	196	223	24.8894
AUUGACCUCCCCGCCAUGUGUUUAAUA	chr2:87000794-87001070(+)$1	276	48	75	24.5880
UUUGGGUUUUCUUAAAUAUGCCAAAAG	chr13:45967517-45967802(-)$1	285	52	79	24.0614
AUCUUUUCCAUCGUGUUAAAAAGAAAA	chr1:92147061-92147354(-)$1	293	191	218	22.6416
CCAAGCUGUGAUUUUGUGAGGCUUGUC	chr7:47316696-47316966(-)$1	270	159	186	22.3975
UUGAUGAUAUGUAUUUAUUCauuuguu	chr19:10396378-10396657(+)$1	279	73	100	21.6781
CUGUGAAUACAAUACUAUCCUUUACAG	chr7:26412223-26412506(+)$1	283	169	196	21.8530
CAUAUCCUCUGUUCAUUUGAUUUUGGA	chr2:87004737-87004976(+)$1	239	197	224	22.2425
uggaauugucuauuucuuaaauucuac	chr1:226171063-226171328(-)$1	265	229	256	22.3388
UGUUGAUAUAACCUUUUUAGUUAACCU	chr6:7288927-7289202(-)$1	275	124	151	23.5487
AAACACAGACACAUGAAAUGAAAGUUU	chr4:100544975-100545246(+)$1	271	89	116	23.1598
UGUUUAAUAUUUUGUUCUCUUAAACUC	chrX:49862781-49863041(+)$1	260	86	113	22.8525
GUUGAUUAUUAGAUAAAUUUAACCUGC	chr3:73117576-73117826(+)$1	250	80	107	22.3482
uaagauguauaugaaaaucauuuuauu	chr7:139790279-139790537(-)$1	258	225	252	24.7601
UGGAGGAAAAAAAAUCAUAUCCCCACC	chr19:57322427-57322687(-)$1	260	206	233	23.1234
AAGUAAAAAUAUUGAAUGGAACUUCUA	chr2:223807912-223808163(+)$1	251	135	162	20.7184
AUGUUUUGACAAUGAAAUUUACAUAUC	chr14:39501335-39501637(-)$1	302	269	296	22.6816
AAAGGGCUUUUGAUUAUUGUUUUUUCU	chr8:125324145-125324457(-)$1	312	240	267	24.6833
GCAAAUGAGUAUUUGUUGCAUUUGUUC	chr15:69561978-69562301(+)$1	323	127	154	24.6833
AGUGAAGCUAAUUGUCAACUUUAUUAA	chr5:32601151-32601423(+)$1	272	203	230	22.9645
AGGACCAGUUUAUGUUUGUGGUUUUGG	chr15:44063593-44063834(+)$1	241	7	34	24.6833
CAGAUUUUUUUUUUUCUUAAAUGUAUU	chr2:99235560-99235863(-)$1	303	6	33	23.8818
AAUUUCAGUUGUCAGUUGUGGAAUUCA	chr2:62451011-62451278(+)$1	267	30	57	24.3802
GUUAAACUGAAUAGAAUUGUAUAGCGA	chr6:119500590-119500846(-)$1	256	141	168	23.3002
GUGUUCUGUUUUAAAUAAAGGUUGCAA	chr1:179068461-179068722(-)$1	261	216	243	23.9863
CCUAGCAAGACUUUACAAGAUAGGAUC	chr2:86830640-86830925(-)$1	285	231	258	21.6625
GUUCUUGAAAGUACUAUUCCCAGGGAU	chr6:129898479-129898779(-)$1	300	145	172	24.1693
GUCGUUUUUUGUUUGUUUUUUAAAUGU	chr3:133875906-133876181(-)$1	275	85	112	21.9646
AGAUGGUUUUUCUUUUUUAUCCAUCUG	chr5:96369792-96370017(+)$1	225	66	93	23.1018
UGUAUAAUAUUUCCCUUAAAUAUGCAU	chr12:116396859-116397121(-)$1	262	194	221	21.1505
GCCUGGAUUUGAAAUACCUACCAGUGA	chr3:123210368-123210603(-)$1	235	189	216	21.3584
AUAGUCCAUGUUAAUAGUGGGGCUUUC	chr5:32124932-32125171(-)$1	239	168	195	24.2128
UCAGUGCUGCUUAAUUUUGUUCUGAAU	chr9:129647910-129648212(+)$1	302	130	157	22.9945
ACAUAUUAAUGGUAUUGAAAUGUGUUA	chr19:47507721-47508008(+)$1	287	202	229	22.5095
UUUUCUUUGCCUUGUAAUAAGAUUGUA	chr1:92146210-92146507(-)$1	297	91	118	23.1748
UUUGCUGAUCUUUCAUAAAGCAGAAUG	chr10:124817571-124817846(+)$1	275	105	132	23.8692
AUGAAUAAUCAAAAUAAUUUCAUCAAC	chr6:47592359-47592644(+)$1	285	252	279	22.5067
UCACCCAGAAGAAAAUAGUGGUGUGAU	chr15:29992733-29993028(-)$1	295	29	56	24.2324
UAUAAAGUUUUUUUAUUUCUUUUGUGC	chr6:18225125-18225425(-)$1	300	81	108	23.0977
AUAAUUUCAAUUUGUAAACUUUGUUAA	chr17:38544736-38545018(-)$1	282	84	111	20.7697
CCAUACUUUGUUAUAUAUGUUAGUGGU	chr5:132333702-132334013(-)$1	311	39	66	22.9694
UAAUCACUCUAAUUAAUUGUAAUCUGA	chr3:41281469-41281718(+)$1	249	138	165	21.3737
GUAGGCCUUUUAACAUUUUGUUCUUAC	chr3:25639527-25639797(-)$1	270	128	155	24.2298
UAUAUUUAUACUGUCUGGGGAUGUGUG	chr6:64291107-64291333(+)$1	226	121	148	24.8217
UGGGGGAAGAAGAAGAAGUCCCCUGUA	chr8:22879265-22879571(-)$1	306	207	234	22.5857
AGGCCAGUCCUAUUCAACCUAGCUUUC	chr6:75965665-75965903(-)$1	238	124	151	23.9386
gcuguaauuuguuuuaaucuuuauagu	chr5:131527512-131527781(-)$1	269	141	168	24.1693
UUUACUCUUCUCUAAUAUGGGUCUAUU	chr2:64859745-64860012(-)$1	267	189	216	23.0339
UUGUGCAUUAUUUGAACCCUGUCAAUA	chr19:57324397-57324640(-)$1	243	136	163	24.0692
UUUAAAACAAUAUUCUCUUUUUGAAAA	chr11:102269265-102269548(-)$1	283	21	48	24.0423
CUCACUGUACGGUUUAAUUUGGUGAUA	chr9:123943124-123943384(-)$1	260	49	76	23.4467
UAUAUUUAUACUGUCUGGGGAUGUGUG	chr6:64291133-64291364(+)$1	231	95	122	24.8217
CUCCCUGUAAACUAAAAGCUUCAGGGU	chr4:88904100-88904351(+)$1	251	126	153	20.9468
UUCAAGAAAUAAAAAUCAACUUGUGUA	chr5:74657183-74657419(+)$1	236	27	54	22.4280
UGAAUUGUGUUUAUAUGUUAGUUUGAU	chr5:133936753-133937052(-)$1	299	107	134	22.4120

#DB
(((((.............)))))...)	chr8:101533248-101533559(-)$1	1	89	116	22.7668
(((((((............))))))))	chr16:15504488-15504758(+)$1	1	161	188	22.3388
(((((((............))))))).	chr10:124817492-124817722(+)$1	1	183	210	24.8257
((((((..............))))).)	chr2:228681873-228682101(+)$1	1	93	120	22.1726
(..((((............))))..).	chr14:62214798-62215042(+)$1	1	84	111	23.0637
((((((............)))))))))	chr5:40760120-40760370(-)$1	1	76	103	24.0974
(.(((((............).))))))	chr1:11903006-11903265(+)$1	1	7	34	23.4625
.(((((..............))))).)	chr11:77375906-77376215(-)$1	1	32	59	22.5704
(((((((............).))))))	chr12:80168049-80168326(-)$1	1	24	51	23.7750
.((((.............))))..)))	chr15:59955039-59955360(-)$1	1	27	54	21.4158
(((((((...........))))))).)	chr18:60245528-60245853(+)$1	1	196	223	24.8894
(((((.(............).))))).	chr2:87000794-87001070(+)$1	1	48	75	24.5880
(((.(((............))).))))	chr13:45967517-45967802(-)$1	1	52	79	24.0614
.((((((...........)))))))))	chr1:92147061-92147354(-)$1	1	191	218	22.6416
(((((((............))))))..	chr7:47316696-47316966(-)$1	1	159	186	22.3975
..(((((...........)))))....	chr19:10396378-10396657(+)$1	1	73	100	21.6781
(((((((.............)))))))	chr7:26412223-26412506(+)$1	1	169	196	21.8530
((.(((............)))..))))	chr2:87004737-87004976(+)$1	1	197	224	22.2425
(((((((............))))))))	chr1:226171063-226171328(-)$1	1	229	256	22.3388
.((((((............))))))..	chr6:7288927-7289202(-)$1	1	124	151	23.5487
((((.((...........))...))))	chr4:100544975-100545246(+)$1	1	89	116	23.1598
.((((((............))))))))	chrX:49862781-49863041(+)$1	1	86	113	22.8525
(((((.............)))))((((	chr3:73117576-73117826(+)$1	1	80	107	22.3482
(((((((...........))))))).)	chr7:139790279-139790537(-)$1	1	225	252	24.7601
(((.(((............))))))).	chr19:57322427-57322687(-)$1	1	206	233	23.1234
((((................)))))).	chr2:223807912-223808163(+)$1	1	135	162	20.7184
((((................)))))))	chr14:39501335-39501637(-)$1	1	269	296	22.6816
(((((((...........)))))))))	chr8:125324145-125324457(-)$1	1	240	267	24.6833
(((((((...........)))))))))	chr15:69561978-69562301(+)$1	1	127	154	24.6833
(((((((...........)))))))..	chr5:32601151-32601423(+)$1	1	203	230	22.9645
(((((((...........)))))))))	chr15:44063593-44063834(+)$1	1	7	34	24.6833
.(.((((...........)))).)...	chr2:99235560-99235863(-)$1	1	6	33	23.8818
(.(((((...........)))))))))	chr2:62451011-62451278(+)$1	1	30	57	24.3802
((((.((...........)).))))))	chr6:119500590-119500846(-)$1	1	141	168	23.3002
(((.(((...........))).)))))	chr1:179068461-179068722(-)$1	1	216	243	23.9863
((((................)))))).	chr2:86830640-86830925(-)$1	1	231	258	21.6625
(((((((.............)))))))	chr6:129898479-129898779(-)$1	1	145	172	24.1693
..(((((..............))))).	chr3:133875906-133876181(-)$1	1	85	112	21.9646
((((((..............)))))))	chr5:96369792-96370017(+)$1	1	66	93	23.1018
((((((..............)))))))	chr12:116396859-116397121(-)$1	1	194	221	21.1505
..((((..............))))..)	chr3:123210368-123210603(-)$1	1	189	216	21.3584
..(((((............)))))...	chr5:32124932-32125171(-)$1	1	168	195	24.2128
((((.((...........)).))))).	chr9:129647910-129648212(+)$1	1	130	157	22.9945
(((((((...........)))))))).	chr19:47507721-47508008(+)$1	1	202	229	22.5095
(..((((...........))))....)	chr1:92146210-92146507(-)$1	1	91	118	23.1748
((((((............)))))))((	chr10:124817571-124817846(+)$1	1	105	132	23.8692
(((((.............)))))....	chr6:47592359-47592644(+)$1	1	252	279	22.5067
(((((((...........))).)))))	chr15:29992733-29993028(-)$1	1	29	56	24.2324
((.((((...........)))))))))	chr6:18225125-18225425(-)$1	1	81	108	23.0977
((((................))))..)	chr17:38544736-38545018(-)$1	1	84	111	20.7697
((((((............))..)))))	chr5:132333702-132334013(-)$1	1	39	66	22.9694
.....((...........))....)))	chr3:41281469-41281718(+)$1	1	138	165	21.3737
..(((.(............).)))..)	chr3:25639527-25639797(-)$1	1	128	155	24.2298
(((((((...........)))))))))	chr6:64291107-64291333(+)$1	1	121	148	24.8217
(((((((...........)))))))).	chr8:22879265-22879571(-)$1	1	207	234	22.5857
((((.((...........)).))))).	chr6:75965665-75965903(-)$1	1	124	151	23.9386
(((((((.............)))))))	chr5:131527512-131527781(-)$1	1	141	168	24.1693
(..((((...........))))..)..	chr2:64859745-64860012(-)$1	1	189	216	23.0339
(((.(((............))))))))	chr19:57324397-57324640(-)$1	1	136	163	24.0692
(((((((...........)))))))..	chr11:102269265-102269548(-)$1	1	21	48	24.0423
.((((((............)))))).)	chr9:123943124-123943384(-)$1	1	49	76	23.4467
(((((((...........)))))))))	chr6:64291133-64291364(+)$1	1	95	122	24.8217
..(((((..............))))).	chr4:88904100-88904351(+)$1	1	126	153	20.9468
..((((.............))))..))	chr5:74657183-74657419(+)$1	1	27	54	22.4280
(((((((...........)))))))).	chr5:133936753-133937052(-)$1	1	107	134	22.4120

#PSSM
e : 0.16	g : 0.16	f : 0.12	h : 0.10	! : 0.09	i : 0.06	[ : 0.04	d : 0.04	= : 0.04	a : 0.03	$ : 0.03	% : 0.01	+ : 0.01	" : 0.01	c : 0.01	# : 0.01	
f : 0.20	e : 0.16	g : 0.16	! : 0.12	h : 0.09	i : 0.06	d : 0.06	[ : 0.03	= : 0.03	+ : 0.01	a : 0.01	$ : 0.01	# : 0.01	
e : 0.24	f : 0.18	g : 0.16	h : 0.09	d : 0.09	i : 0.06	! : 0.04	[ : 0.04	= : 0.03	$ : 0.01	c : 0.01	
e : 0.21	g : 0.16	f : 0.16	d : 0.15	h : 0.09	i : 0.06	[ : 0.06	c : 0.03	= : 0.03	$ : 0.01	
e : 0.16	g : 0.13	d : 0.13	f : 0.10	c : 0.10	h : 0.09	i : 0.06	[ : 0.06	y : 0.06	= : 0.03	b : 0.01	$ : 0.01	
g : 0.13	d : 0.12	e : 0.10	f : 0.10	h : 0.09	c : 0.09	b : 0.09	v : 0.06	i : 0.06	y : 0.06	[ : 0.03	= : 0.03	
g : 0.10	h : 0.09	v : 0.07	w : 0.07	d : 0.07	c : 0.07	f : 0.07	e : 0.07	b : 0.07	u : 0.06	a : 0.06	y : 0.06	i : 0.04	= : 0.03	
t : 0.40	u : 0.30	v : 0.12	w : 0.10	y : 0.06	
t : 0.40	u : 0.30	v : 0.12	w : 0.10	y : 0.06	
t : 0.40	u : 0.30	v : 0.12	w : 0.10	y : 0.06	
t : 0.40	u : 0.30	v : 0.12	w : 0.10	y : 0.06	
t : 0.40	u : 0.30	v : 0.12	w : 0.10	y : 0.06	
t : 0.40	u : 0.30	v : 0.12	w : 0.10	y : 0.06	
t : 0.40	u : 0.30	v : 0.12	w : 0.10	y : 0.06	
t : 0.40	u : 0.30	v : 0.12	w : 0.10	y : 0.06	
t : 0.40	u : 0.30	v : 0.12	w : 0.10	y : 0.06	
t : 0.40	u : 0.30	v : 0.12	w : 0.10	y : 0.06	
t : 0.40	u : 0.30	v : 0.12	w : 0.10	y : 0.06	
u : 0.24	w : 0.10	b : 0.09	e : 0.07	d : 0.07	g : 0.07	i : 0.06	v : 0.06	y : 0.06	c : 0.04	h : 0.04	= : 0.03	f : 0.01	
w : 0.10	d : 0.10	e : 0.09	g : 0.09	c : 0.09	b : 0.09	h : 0.07	f : 0.07	i : 0.06	a : 0.06	y : 0.06	v : 0.04	= : 0.03	
g : 0.15	d : 0.13	e : 0.12	f : 0.12	] : 0.10	h : 0.09	c : 0.09	i : 0.06	w : 0.03	= : 0.03	3 : 0.01	2 : 0.01	4 : 0.01	
e : 0.20	g : 0.15	d : 0.15	f : 0.15	h : 0.09	i : 0.06	c : 0.06	2 : 0.03	] : 0.03	= : 0.03	3 : 0.01	4 : 0.01	
e : 0.23	f : 0.18	g : 0.16	h : 0.09	d : 0.09	i : 0.06	2 : 0.04	] : 0.03	4 : 0.03	= : 0.03	3 : 0.01	c : 0.01	
f : 0.20	g : 0.16	e : 0.16	h : 0.09	d : 0.07	2 : 0.06	i : 0.06	= : 0.04	4 : 0.04	c : 0.03	3 : 0.01	> : 0.01	a : 0.01	
g : 0.18	f : 0.18	e : 0.16	h : 0.09	2 : 0.07	i : 0.06	d : 0.04	= : 0.04	4 : 0.04	3 : 0.03	c : 0.03	> : 0.01	a : 0.01	
e : 0.15	f : 0.12	g : 0.10	h : 0.09	] : 0.07	2 : 0.07	i : 0.06	d : 0.06	= : 0.04	4 : 0.04	3 : 0.03	c : 0.03	a : 0.01	7 : 0.01	> : 0.01	b : 0.01	: : 0.01	6 : 0.01	
2 : 0.10	e : 0.09	g : 0.09	c : 0.07	f : 0.07	d : 0.07	h : 0.06	i : 0.06	] : 0.06	b : 0.04	: : 0.04	= : 0.04	3 : 0.03	4 : 0.03	a : 0.01	7 : 0.01	> : 0.01	G : 0.01	6 : 0.01	5 : 0.01	

#score	1503.0009026238338
#seq	65
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_CDS_m1_run1.txt

#BEAR
fffff[ccc[bb"""ddddmmmmdddd]bb]ccc22ffff	chr15:78369860-78370070(-)$1	210	14	54	14.0611
b[===========!!bboooooobb]===========]bb	chr7:73011593-73011831(-)$1	238	160	200	15.3836
ddd[ggggggg"""eeeeemmmmeeeeeggggggg]dddd	chr17:36878231-36878475(+)$1	244	155	195	13.2213
ccc[a[ffffff!!eeeeeooooooeeeee333ffffff]	chr17:79913316-79913634(-)$1	318	86	126	12.2868
!!iiiiiiiii[gggggggrrrrrrrrrggggggg]iiii	chr8:145687815-145688067(-)$1	252	120	160	12.2077
fffff[ccc[bb"""ddddmmmmdddd]bb]ccc22ffff	chr15:78369842-78370059(-)$1	217	3	43	14.0611
iiiiiiii[ccc!!eeeeellleeeee4444ccc]iiiii	chr1:110169640-110169927(+)$1	287	36	76	14.2269
!!iiiiiiiiiooooooiiiiiiiiiccc===========	chr4:1231769-1232072(-)$1	303	173	213	11.9556
"""a"""eeeee####cccnnnnnccc]eeeee]a]====	chr2:231902758-231902992(+)$1	234	72	112	13.5301
ccffffff[eeeee!!ccclllccceeeeeffffff]ccc	chr19:1104601-1104871(+)$1	270	68	108	10.8160
ccc!!ccc[dddd"""cccmmmmcccdddd]ccc22ccc3	chrX:48935292-48935571(-)$1	279	106	146	14.1323
b[iiiiiiiii####ccc[eeeeeffffff[a========	chr12:132414113-132414376(+)$1	263	53	93	11.9049
============[bb[aooooooa]bb22===========	chr22:37964458-37964720(+)$1	262	66	106	14.9257
c"""a[dddd[bb[ddddnnnnndddd]bbdddd]accce	chr19:1585104-1585373(-)$1	269	109	149	11.3686
[ccc[ccc[bb"""bb[bbmmmmbb]bb22bbccc]ccc]	chr2:231902513-231902748(+)$1	235	32	72	12.0089
!!bb==========[ccc[ccc!!ccca[ffffffbbccc	chr15:80215315-80215598(-)$1	283	116	156	10.8699
gg[ccc####bb[dddd[ammmma]dddd]bbcccggggg	chr2:42275452-42275696(+)$1	244	140	180	12.7318
cc####ffffff[a[ddddmmmmdddd]a22ffffff333	chr19:460530-460774(-)$1	244	193	233	13.8502
ffff[eeeee[ccc!!cccmmmmccc]ccc22eeeee]ff	chr3:98451681-98451921(+)$1	240	80	120	11.8592
$$$$$==========[cccnnnnnccc]==========22	chr19:1254002-1254271(+)$1	269	104	144	14.5975
dddd!!ggggggg"""cccmmmmcccgggggggdddd22d	chr11:65325150-65325431(-)$1	281	216	256	13.1634
eggggggg[ccc!!ddddnnnnndddd]cccggggggg44	chr3:186502077-186502320(+)$1	243	89	129	13.6539
!===========####dddd!!bb!!ffffff[bb[dddd	chr1:27022734-27023050(+)$1	316	178	218	10.7436
iiiiiiiii[ccc[eeeeeooooooeeeee]ccc333iii	chr9:136223066-136223330(-)$1	264	201	241	14.2059
"""dddd!!ccc"""ddddrrrrrrrrrdddd333cccdd	chr9:139102935-139103226(-)$1	291	8	48	11.6442
"""ccc[ccc[ccc[ddddllldddd22ccc]cccccc22	chr16:87426130-87426483(+)$1	353	123	163	13.4080
[==========="""a!!ccc[a[ccc[ccclllccc]cc	chr10:91404134-91404465(-)$1	331	151	191	12.6412
gg==============[bbmmmmbb22=============	chr11:124669937-124670179(-)$1	242	156	196	15.6950
fffbbccc!!ccc[ccc[ammmma]ccccccccc]bb]ff	chr17:7311430-7311681(+)$1	251	132	172	12.3701
!!ccc!!bb[ccc[a[cccmmmmcccacccbb22ccc]bb	chr12:132402900-132403145(+)$1	245	186	226	12.9671
cc[a[ffffff####ddddoooooodddd4444ffffffa	chr19:1253807-1254083(+)$1	276	137	177	13.7380
===[ccc[bb"""a[ddddoooooodddd]a22bb]ccc=	chr2:242447735-242448008(-)$1	273	103	143	13.8175
####dddd[bb####ddddmmmmddddbbdddd22dddd2	chr9:74979420-74979699(-)$1	279	63	103	12.7307
c"""==========!!cccmmmmccc==========333c	chr22:50354590-50354874(+)$1	284	222	262	17.7469
e[ggggggg$$$$$eeeeemmmmeeeeeggggggg]eeee	chr16:24741064-24741358(+)$1	294	32	72	12.6833
!!ccc[ccc[dddd[ddddoooooodddd]dddd]ccc]c	chr19:460720-460967(-)$1	247	186	226	13.0595
h[ddddggggggg"""cccmmmmccc333ggggggg22dd	chr1:2160039-2160323(+)$1	284	27	67	13.8405
e[ccc[eeeee[bb[a[bbmmmmbb]a22bb]eeeee]cc	chr1:27320426-27320697(+)$1	271	99	139	11.0988
hh[dddd[a[bb"""===========[ccciiiiiiiii[	chr22:29279698-29279951(+)$1	253	93	133	12.0995
$$$$$ccc[a[ccc[ddddmmmmdddd]ccc]acccccc]	chr19:2272816-2273083(+)$1	267	188	228	14.4705
!!=========="""ddddmmmmdddd]==========cc	chr2:128180658-128180880(+)$1	222	141	181	19.2291
ggg[a[a[bb!!dddd[bbmmmmbb]dddd22bb]aa]gg	chr7:150777598-150777874(-)$1	276	135	175	11.3180
==========[a[ddddoooooodddd22a]=========	chr12:58005524-58005834(+)$1	310	23	63	15.9385
======[a!!a[a!!dddd[a!!ddddeeeee!!eeeeem	chr4:985899-986170(-)$1	271	117	157	11.3156
Dccc[dddd[ccc!!ddddmmmmdddd22ccc]dddd]cc	chr20:61847050-61847321(-)$1	271	147	187	12.7952
I:bb[===========[bbmmmmbb]===========]bb	chr11:637284-637535(+)$1	251	123	163	12.7255
:::==========[ddddnnnnndddd22==========:	chr19:55899450-55899724(+)$1	274	42	82	11.6413

#otherMatches

#Seq PSSM
ggcgcagcggccgcggcgcggaggcgcagggcgcgggcgc	chr15:78369860-78370070(-)$1	210	14	54	14.0611
CCUGCCUUUGGGCCUUGCUUCUCCAUGCCCAGAGGCAAGC	chr7:73011593-73011831(-)$1	238	160	200	15.3836
UUGGGGGGUUGAAUGGGGCCGCUGCCCCCAACCCCGCAAG	chr17:36878231-36878475(+)$1	244	155	195	13.2213
CCUGGGGGUGCUGAGCUCUGAGCCUGGGGUGGGGGCACUG	chr17:79913316-79913634(-)$1	318	86	126	12.2868
gggcccggggcggccgccgggcaggcggcggcggcggcuc	chr8:145687815-145688067(-)$1	252	120	160	12.2077
ggcgcagcggccgcggcgcggaggcgcagggcgcgggcgc	chr15:78369842-78370059(-)$1	217	3	43	14.0611
GGCAGGAGCUGUCUGACCUACUGGGUCUUCAACAUCUCUU	chr1:110169640-110169927(+)$1	287	36	76	14.2269
AGGCCCGGGCCACAGCAGGUCUGGGUGCCACUGGGGCAGG	chr4:1231769-1232072(-)$1	303	173	213	11.9556
ACUGCCCCGGCCUCCCGGCCUCCUGCCUGGCCGUCCAGGC	chr2:231902758-231902992(+)$1	234	72	112	13.5301
GCCCUUUGUCCCCGCUAGCGGCGCUCGGGGUGGGGGAGCC	chr19:1104601-1104871(+)$1	270	68	108	10.8160
CAGAAGAGCUGGGCUGGGCAUUGGCUCCCACCUCCACUGA	chrX:48935292-48935571(-)$1	279	106	146	14.1323
GUCAGGGUCCGAGAGGUUAGGGGUCGGCAGAGGCGGAGCU	chr12:132414113-132414376(+)$1	263	53	93	11.9049
GCUGGGUUGGGCCCAGUGGCUGAGGUGAAGUCCAGCCCAG	chr22:37964458-37964720(+)$1	262	66	106	14.9257
guuuggggucuggggUCCGCCCGGGGCGCCGACCGUCCCG	chr19:1585104-1585373(-)$1	269	109	149	11.3686
cuggggcggcgggggcggcggcggcggcggcgCGCGCCAU	chr2:231902513-231902748(+)$1	235	32	72	12.0089
GAgcgccgggcgccgggcggggcugggcggggacgccccg	chr15:80215315-80215598(-)$1	283	116	156	10.8699
ggcgccugauggaccuggcuccgggcgggcccggccugcc	chr2:42275452-42275696(+)$1	244	140	180	12.7318
GGCUACACCCCGACGCCAGGGUCCUGGGGCCCGGGGUCUC	chr19:460530-460774(-)$1	244	193	233	13.8502
GUCUCGGAGCCCGGUGCGCCUCUGCGGUCGUCGCUCCUGG	chr3:98451681-98451921(+)$1	240	80	120	11.8592
GGCUGGGCUGGGGGCGCCGCAAGCUGGGGCUCCCAGCUGA	chr19:1254002-1254271(+)$1	269	104	144	14.5975
GCGGACCUGUCUCAAGGGCCAGUGUCGGGACAGUUGUCAG	chr11:65325150-65325431(-)$1	281	216	256	13.1634
GUGCAGUUGAGGUGGCCUGGAAGGGGUGUCUGACUGCAGU	chr3:186502077-186502320(+)$1	243	89	129	13.6539
CCCGCCGCCGCCAGCAGCCUGGGCAACCCGCCGCCGCCGC	chr1:27022734-27023050(+)$1	316	178	218	10.7436
GCCCAGGUGAGGGCUGCAGGCCGGGCUGUGAUCCAGGCGC	chr9:136223066-136223330(-)$1	264	201	241	14.2059
GAGCACUUUGAGGAAAUGGCUAAAGAAUCCAUGGACUCGG	chr9:139102935-139103226(-)$1	291	8	48	11.6442
ggaccgagccgggagggccaggggcuggucugggccgggG	chr16:87426130-87426483(+)$1	353	123	163	13.4080
AGCGUGCGGGGCCCGGGACUGGGAGCGGCUGAGGCAGGCG	chr10:91404134-91404465(-)$1	331	151	191	12.6412
GUGGCGGCGGUGGCGGGGCUGCGGCAGCCGCCGCCGCCGC	chr11:124669937-124670179(-)$1	242	156	196	15.6950
CCCCCGAUCAGCAUGUGGCUCCUGGCGCUGUGUCUGGUGG	chr17:7311430-7311681(+)$1	251	132	172	12.3701
CUGGGCCCUGCAGCGAGGCCCCAGCCCCUGAGCUCCCUGC	chr12:132402900-132403145(+)$1	245	186	226	12.9671
CCCCACAGCCCCCAgcggcgcccgggccgggccgggcUGG	chr19:1253807-1254083(+)$1	276	137	177	13.7380
GGGCGCUGCAgagcgggccgggggaggccgggauggagcc	chr2:242447735-242448008(-)$1	273	103	143	13.8175
GCUUUCGCAUUUGGGACCCUGCAGGGUGAGUGAUACGGGG	chr9:74979420-74979699(-)$1	279	63	103	12.7307
GGGCGCCGUGCUGGGUAGCGGCGGCUUCGGCACGGUCUAC	chr22:50354590-50354874(+)$1	284	222	262	17.7469
CUGCGGAGGGCUUGAGGCUCGCGAGCCUCCUUCGCCGCGC	chr16:24741064-24741358(+)$1	294	32	72	12.6833
cccggcgcuggcggccgccguccugggcgccugcgagccc	chr19:460720-460967(-)$1	247	186	226	13.0595
CGUGAUCGGCCGUGAGCcggcggcggggggcggccggggu	chr1:2160039-2160323(+)$1	284	27	67	13.8405
cgccggccccggagggggcucuggcgcggcugcgggggcg	chr1:27320426-27320697(+)$1	271	99	139	11.0988
gccgccgccgccgccgccugcgccgccgcccccgcggccu	chr22:29279698-29279951(+)$1	253	93	133	12.0995
UGAGAUUGUGAGACCGGGGCAUCCCCUUGUCCCCAAGAGA	chr19:2272816-2273083(+)$1	267	188	228	14.4705
UUGGGGGCGCGGCACCAGCACCAGCUGCCCGCGCCCUCCC	chr2:128180658-128180880(+)$1	222	141	181	19.2291
AGGGCAGCGGGAGCUGGUGUUAGCGGCAGCGGCCACGGUC	chr7:150777598-150777874(-)$1	276	135	175	11.3180
CCCCCCUCCCACAGCCUGGACCGGGGUAGGAGGGAGGGGG	chr12:58005524-58005834(+)$1	310	23	63	15.9385
UGGGCAUGGGGUGGACAGCAGGACCGUUUGCCAACCUGGG	chr4:985899-986170(-)$1	271	117	157	11.3156
cggggUCUGGGUUGAGGUCCUGGGGCUGGAACGCAGAGCC	chr20:61847050-61847321(-)$1	271	147	187	12.7952
CGGCGGCGCUGGUGGGGGGCGUGCUGCUCAUCGGCGCGGU	chr11:637284-637535(+)$1	251	123	163	12.7255
AUAUGGGCUGGAGAGGGAUGGAUUCUUGCUUUCAGCCUAC	chr19:55899450-55899724(+)$1	274	42	82	11.6413

#DB
(((((.(((.((...((((....)))).)).)))..))))	chr15:78369860-78370070(-)$1	1	14	54	14.0611
(.(((((((((((..((......)).))))))))))).))	chr7:73011593-73011831(-)$1	1	160	200	15.3836
(((.(((((((...(((((....)))))))))))).))))	chr17:36878231-36878475(+)$1	1	155	195	13.2213
(((.(.((((((..(((((......)))))...)))))).	chr17:79913316-79913634(-)$1	1	86	126	12.2868
..(((((((((.(((((((.........))))))).))))	chr8:145687815-145688067(-)$1	1	120	160	12.2077
(((((.(((.((...((((....)))).)).)))..))))	chr15:78369842-78370059(-)$1	1	3	43	14.0611
((((((((.(((..(((((...)))))....))).)))))	chr1:110169640-110169927(+)$1	1	36	76	14.2269
..(((((((((......))))))))))))(((((((((((	chr4:1231769-1232072(-)$1	1	173	213	11.9556
...(...(((((....(((.....))).))))).).))))	chr2:231902758-231902992(+)$1	1	72	112	13.5301
((((((((.(((((..(((...)))))))))))))).)))	chr19:1104601-1104871(+)$1	1	68	108	10.8160
(((..(((.((((...(((....))))))).)))..))).	chrX:48935292-48935571(-)$1	1	106	146	14.1323
(.(((((((((....(((.(((((((((((.(((((((((	chr12:132414113-132414376(+)$1	1	53	93	11.9049
((((((((((((.((.(......).))..)))))))))))	chr22:37964458-37964720(+)$1	1	66	106	14.9257
(...(.((((.((.((((.....)))).)))))).)))))	chr19:1585104-1585373(-)$1	1	109	149	11.3686
.(((.(((.((...((.((....)).))..))))).))).	chr2:231902513-231902748(+)$1	1	32	72	12.0089
..((((((((((((.(((.(((..((((.(((((((((((	chr15:80215315-80215598(-)$1	1	116	156	10.8699
((.(((....((.((((.(....).)))).))))))))))	chr2:42275452-42275696(+)$1	1	140	180	12.7318
((....((((((.(.((((....)))).)..))))))...	chr19:460530-460774(-)$1	1	193	233	13.8502
((((.(((((.(((..(((....))).)))..))))).))	chr3:98451681-98451921(+)$1	1	80	120	11.8592
.....((((((((((.(((.....))).))))))))))..	chr19:1254002-1254271(+)$1	1	104	144	14.5975
((((..(((((((...(((....))))))))))))))..)	chr11:65325150-65325431(-)$1	1	216	256	13.1634
((((((((.(((..((((.....)))).))))))))))..	chr3:186502077-186502320(+)$1	1	89	129	13.6539
.(((((((((((....((((..((..((((((.((.((((	chr1:27022734-27023050(+)$1	1	178	218	10.7436
(((((((((.(((.(((((......))))).)))...)))	chr9:136223066-136223330(-)$1	1	201	241	14.2059
...((((..(((...((((.........))))...)))))	chr9:139102935-139103226(-)$1	1	8	48	11.6442
...(((.(((.(((.((((...))))..))).))))))..	chr16:87426130-87426483(+)$1	1	123	163	13.4080
.(((((((((((...(..(((.(.(((.(((...))).))	chr10:91404134-91404465(-)$1	1	151	191	12.6412
((((((((((((((((.((....))..)))))))))))))	chr11:124669937-124670179(-)$1	1	156	196	15.6950
((((((((..(((.(((.(....).))))))))).)).))	chr17:7311430-7311681(+)$1	1	132	172	12.3701
..(((..((.(((.(.(((....)))))))))..))).))	chr12:132402900-132403145(+)$1	1	186	226	12.9671
((.(.((((((....((((......))))....)))))))	chr19:1253807-1254083(+)$1	1	137	177	13.7380
(((.(((.((...(.((((......)))).)..)).))))	chr2:242447735-242448008(-)$1	1	103	143	13.8175
....((((.((....((((....))))))))))..)))).	chr9:74979420-74979699(-)$1	1	63	103	12.7307
(...((((((((((..(((....)))))))))))))...)	chr22:50354590-50354874(+)$1	1	222	262	17.7469
(.(((((((.....(((((....)))))))))))).))))	chr16:24741064-24741358(+)$1	1	32	72	12.6833
..(((.(((.((((.((((......)))).)))).))).)	chr19:460720-460967(-)$1	1	186	226	13.0595
(.(((((((((((...(((....)))...)))))))..))	chr1:2160039-2160323(+)$1	1	27	67	13.8405
(.(((.(((((.((.(.((....)).)..)).))))).))	chr1:27320426-27320697(+)$1	1	99	139	11.0988
((.((((.(.((...(((((((((((.((((((((((((.	chr22:29279698-29279951(+)$1	1	93	133	12.0995
.....(((.(.(((.((((....)))).))).))))))).	chr19:2272816-2273083(+)$1	1	188	228	14.4705
..((((((((((...((((....)))).))))))))))))	chr2:128180658-128180880(+)$1	1	141	181	19.2291
(((.(.(.((..((((.((....)).))))..)).)).))	chr7:150777598-150777874(-)$1	1	135	175	11.3180
((((((((((.(.((((......))))..).)))))))))	chr12:58005524-58005834(+)$1	1	23	63	15.9385
((((((.(..(.(..((((.(..(((((((((..(((((.	chr4:985899-986170(-)$1	1	117	157	11.3156
((((.((((.(((..((((....))))..))).)))).))	chr20:61847050-61847321(-)$1	1	147	187	12.7952
(.((.(((((((((((.((....)).))))))))))).))	chr11:637284-637535(+)$1	1	123	163	12.7255
...((((((((((.((((.....))))..)))))))))).	chr19:55899450-55899724(+)$1	1	42	82	11.6413

#PSSM
c : 0.14	! : 0.14	f : 0.08	= : 0.08	" : 0.06	g : 0.06	e : 0.06	b : 0.04	d : 0.04	i : 0.04	[ : 0.04	$ : 0.04	h : 0.04	# : 0.02	D : 0.02	I : 0.02	: : 0.02	
c : 0.14	! : 0.12	= : 0.12	[ : 0.10	" : 0.10	f : 0.08	g : 0.08	d : 0.04	i : 0.04	$ : 0.04	: : 0.04	# : 0.02	h : 0.02	
= : 0.19	c : 0.14	f : 0.10	i : 0.10	" : 0.10	d : 0.06	[ : 0.06	g : 0.06	b : 0.04	# : 0.04	$ : 0.04	: : 0.02	
= : 0.19	c : 0.14	i : 0.10	f : 0.08	[ : 0.08	d : 0.08	b : 0.06	a : 0.04	" : 0.04	# : 0.04	$ : 0.04	g : 0.04	! : 0.02	
= : 0.23	c : 0.12	i : 0.10	[ : 0.10	d : 0.08	f : 0.06	g : 0.06	a : 0.06	! : 0.04	$ : 0.04	" : 0.02	# : 0.02	b : 0.02	
= : 0.27	[ : 0.14	c : 0.14	i : 0.10	d : 0.10	g : 0.06	f : 0.04	! : 0.04	" : 0.02	# : 0.02	e : 0.02	
= : 0.25	c : 0.17	g : 0.10	i : 0.10	d : 0.10	f : 0.08	e : 0.04	[ : 0.04	" : 0.02	# : 0.02	! : 0.02	a : 0.02	
= : 0.25	c : 0.17	g : 0.10	i : 0.10	f : 0.08	e : 0.06	d : 0.06	[ : 0.06	# : 0.02	! : 0.02	b : 0.02	a : 0.02	
= : 0.25	[ : 0.14	c : 0.08	g : 0.08	i : 0.08	f : 0.06	e : 0.06	! : 0.06	b : 0.06	d : 0.04	# : 0.02	a : 0.02	
= : 0.25	[ : 0.14	c : 0.08	e : 0.08	b : 0.08	g : 0.06	f : 0.06	i : 0.06	d : 0.04	! : 0.04	# : 0.02	$ : 0.02	a : 0.02	
= : 0.23	c : 0.14	b : 0.12	[ : 0.10	g : 0.06	f : 0.06	i : 0.06	e : 0.06	d : 0.04	" : 0.02	$ : 0.02	! : 0.02	a : 0.02	
= : 0.23	c : 0.21	b : 0.10	" : 0.06	[ : 0.06	# : 0.06	f : 0.04	e : 0.04	d : 0.04	g : 0.04	o : 0.02	$ : 0.02	! : 0.02	a : 0.02	
" : 0.19	= : 0.14	c : 0.14	# : 0.10	[ : 0.08	! : 0.06	g : 0.06	d : 0.06	b : 0.04	o : 0.02	e : 0.02	$ : 0.02	a : 0.02	
" : 0.23	! : 0.12	# : 0.10	[ : 0.10	= : 0.10	d : 0.08	c : 0.06	b : 0.04	a : 0.04	g : 0.02	o : 0.02	e : 0.02	$ : 0.02	
" : 0.19	[ : 0.14	! : 0.12	d : 0.12	e : 0.10	# : 0.10	= : 0.06	b : 0.04	g : 0.02	o : 0.02	c : 0.02	a : 0.02	
d : 0.40	e : 0.10	! : 0.06	" : 0.06	c : 0.06	[ : 0.06	= : 0.06	b : 0.04	# : 0.04	a : 0.04	g : 0.02	o : 0.02	
d : 0.40	c : 0.25	e : 0.10	[ : 0.10	b : 0.02	g : 0.02	o : 0.02	a : 0.02	! : 0.02	= : 0.02	
d : 0.36	c : 0.23	e : 0.10	b : 0.10	o : 0.06	[ : 0.04	g : 0.02	i : 0.02	! : 0.02	= : 0.02	
d : 0.29	c : 0.21	e : 0.10	b : 0.10	o : 0.06	n : 0.06	[ : 0.04	a : 0.04	g : 0.02	i : 0.02	= : 0.02	
m : 0.46	o : 0.17	n : 0.10	l : 0.06	r : 0.04	c : 0.04	i : 0.02	e : 0.02	d : 0.02	= : 0.02	[ : 0.02	
m : 0.46	o : 0.17	n : 0.10	l : 0.06	r : 0.04	c : 0.04	i : 0.02	e : 0.02	! : 0.02	= : 0.02	a : 0.02	
m : 0.46	o : 0.17	n : 0.10	l : 0.06	r : 0.04	! : 0.04	i : 0.02	e : 0.02	c : 0.02	[ : 0.02	= : 0.02	
m : 0.46	o : 0.17	n : 0.10	r : 0.04	e : 0.04	! : 0.04	i : 0.02	c : 0.02	b : 0.02	d : 0.02	a : 0.02	= : 0.02	
d : 0.27	b : 0.14	c : 0.14	o : 0.10	e : 0.08	a : 0.06	r : 0.04	n : 0.04	i : 0.02	! : 0.02	[ : 0.02	= : 0.02	
d : 0.27	c : 0.23	b : 0.12	o : 0.10	e : 0.06	] : 0.06	r : 0.04	i : 0.02	f : 0.02	! : 0.02	= : 0.02	
d : 0.36	c : 0.23	e : 0.12	] : 0.10	r : 0.04	i : 0.02	f : 0.02	b : 0.02	! : 0.02	2 : 0.02	= : 0.02	
d : 0.38	e : 0.12	c : 0.12	= : 0.06	r : 0.04	f : 0.04	b : 0.04	2 : 0.04	a : 0.04	] : 0.02	g : 0.02	3 : 0.02	[ : 0.02	
] : 0.19	e : 0.12	d : 0.12	2 : 0.12	c : 0.10	= : 0.08	r : 0.04	f : 0.04	b : 0.04	4 : 0.02	a : 0.02	g : 0.02	[ : 0.02	3 : 0.02	
c : 0.19	d : 0.14	= : 0.12	2 : 0.12	e : 0.10	b : 0.08	g : 0.08	f : 0.04	4 : 0.02	[ : 0.02	a : 0.02	3 : 0.02	
= : 0.19	c : 0.19	g : 0.10	e : 0.10	b : 0.08	d : 0.08	f : 0.06	] : 0.06	4 : 0.04	2 : 0.04	a : 0.02	
= : 0.19	c : 0.12	] : 0.10	g : 0.10	d : 0.08	b : 0.08	f : 0.06	2 : 0.06	4 : 0.04	e : 0.04	3 : 0.02	[ : 0.02	a : 0.02	i : 0.02	
= : 0.21	c : 0.14	g : 0.12	f : 0.08	d : 0.08	b : 0.06	2 : 0.06	] : 0.06	e : 0.04	3 : 0.02	a : 0.02	l : 0.02	4 : 0.02	i : 0.02	
= : 0.23	c : 0.19	g : 0.12	e : 0.06	f : 0.06	d : 0.06	3 : 0.04	2 : 0.04	[ : 0.02	l : 0.02	4 : 0.02	i : 0.02	a : 0.02	b : 0.02	! : 0.02	] : 0.02	
= : 0.23	c : 0.21	g : 0.10	f : 0.10	d : 0.08	b : 0.06	e : 0.04	2 : 0.04	] : 0.02	3 : 0.02	l : 0.02	i : 0.02	! : 0.02	
= : 0.23	c : 0.12	g : 0.10	f : 0.10	] : 0.10	2 : 0.08	e : 0.06	d : 0.04	b : 0.04	3 : 0.04	a : 0.02	i : 0.02	
= : 0.23	] : 0.12	c : 0.12	f : 0.08	2 : 0.06	g : 0.06	e : 0.06	d : 0.06	i : 0.04	a : 0.04	b : 0.04	[ : 0.02	3 : 0.02	
= : 0.23	c : 0.21	f : 0.10	d : 0.10	e : 0.08	i : 0.06	b : 0.04	g : 0.04	3 : 0.04	] : 0.02	2 : 0.02	a : 0.02	
c : 0.21	] : 0.19	= : 0.19	f : 0.08	i : 0.08	d : 0.06	g : 0.04	3 : 0.04	2 : 0.04	e : 0.04	
c : 0.23	= : 0.14	f : 0.12	d : 0.10	i : 0.08	b : 0.06	2 : 0.06	g : 0.04	3 : 0.04	e : 0.04	4 : 0.02	] : 0.02	
c : 0.17	= : 0.14	d : 0.10	f : 0.08	b : 0.06	] : 0.06	i : 0.06	2 : 0.06	3 : 0.04	e : 0.04	g : 0.04	4 : 0.02	a : 0.02	[ : 0.02	m : 0.02	: : 0.02	

#score	620.7422152484021
#seq	47
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_CDS_m1_run1.txt

#BEAR
:ggggggg[bbbb[cccnnnnnccc]bb333bb]gggggg	chr1:52507108-52507370(-)$1	262	201	241	11.8874
ggggggg!!cccbb[bboooooobb]bb]ccc22gggggg	chr1:19948490-19948742(+)$1	252	110	150	12.4908
dddd[ggggggg[bb[bbmmmmbb]bb]ggggggg]dddd	chr9:101867461-101867685(+)$1	224	74	114	12.1011
ddgggggggbb!!eeeeemmmmeeeee22bb]ggggggg]	chr16:74330665-74330949(+)$1	284	157	197	12.1140
ffffffggggggg!!cccmmmmcccggggggg]ffffff]	chr7:140402654-140402910(+)$1	256	125	165	14.5624
###eeeeeccc[ccccccmmmmccc333cccccc]eeeee	chr7:73097996-73098275(+)$1	279	126	166	15.0552
gggggccc[ccc[cccccclllccc22ccc]cccccc]gg	chr2:54197781-54198040(-)$1	259	151	191	14.9484
g!!hhhhhhhh!!cccccclllccc]ccchhhhhhhh22g	chr12:96252735-96252955(+)$1	220	16	56	12.5451
!!bb[ffffff[a[cccooooooccc]a]ffffffbb444	chr8:25315623-25315952(-)$1	329	22	62	12.3994
!dddd[==========bbmmmmbb4444==========22	chr14:75520197-75520463(-)$1	266	78	118	14.4624
!!hhhhhhhh[a!!a[aooooooa]a22a]hhhhhhhh22	chr12:111180411-111180678(-)$1	267	206	246	12.4320
cc[ccca!!eeeeecccooooooccc]eeeee22a]ccc]	chr7:150066658-150066926(+)$1	268	192	232	12.7404
eee####ccc[ccc[cccmmmmccc]ccc]ccc333eeee	chr3:122807914-122808175(+)$1	261	187	227	14.4917
c:iiiiiiiii####cccmmmmccc55555iiiiiiiiif	chr12:6602178-6602461(-)$1	283	61	101	12.2018
!ccc[ggggggg"""cccmmmmccc333ggggggg]ccc]	chrX:20284609-20284862(-)$1	253	7	47	17.8875
eeee[a[dddd[a!!cccmmmmccc]a]dddd]a]eeeee	chr4:57301455-57301780(-)$1	325	144	184	13.9133
e!!eeeee[dddd"""bbmmmmbb333dddd]eeeee]ee	chr6:10749374-10749604(+)$1	230	74	114	12.5388
gccc[ffffff[ccccccmmmmccc]ccc333ffffff]c	chr6:31830404-31830686(-)$1	282	204	244	14.5049
ggg!!bb[ffffff[cccmmmmccc]ffffff]bb22ggg	chr14:53150492-53150726(-)$1	234	12	52	12.4603
b[dddd"""ccc!!bb[ammmma]bb22ccc4444dddd]	chr19:2236081-2236355(-)$1	274	222	262	12.2010
FFFF==========cccbbmmmmbb]ccc]==========	chr7:100283780-100284052(-)$1	272	231	271	11.8974
hhhh####eeeee!!ccclllccc333eeeee]hhhhhhh	chr7:56136074-56136357(+)$1	283	96	136	12.0135
"""hhhhhhhh####cccnnnnnccc]hhhhhhhh22eee	chr1:225970900-225971122(+)$1	222	106	146	12.0221
fff[a[accc[cccddddnnnnndddd]ccc]ccc]a]a]	chr4:89444594-89444885(-)$1	291	74	114	11.9801
ccc[eeeee[ccc!!cccmmmmccc22ccc333eeeee]c	chr7:99036642-99036901(+)$1	259	79	119	15.1759
g[bb[a[ggggggg[bbnnnnnbbggggggg333a]bb]g	chr7:140396527-140396743(+)$1	216	140	180	12.0510
hhhhhhhheeeeea[cccmmmmccc333a]eeeee333hh	chr19:1407575-1407876(+)$1	301	234	274	13.9509
gggggccc[ccc[cccccclllccc22ccc]cccccc]gg	chr2:54197731-54197981(-)$1	250	92	132	14.9484
dddeeeeeccc[a[a[bblllbb]a]a]ccc]eeeee]dd	chr12:132402863-132403120(+)$1	257	121	161	11.6234
[ccc[iiiiiiiiifffffflllffffff]iiiiiiiii]	chr22:21996532-21996870(+)$1	338	135	175	11.4865
=ccc[ggggggg!!ddddllldddd333ggggggg]ccc:	chr4:122607343-122607604(-)$1	261	56	96	13.6534
ccc!!bbdddd[ccc!!annnnna4444cccdddd333bb	chr14:68087508-68087770(+)$1	262	132	172	11.5998
ddgggggggbb!!eeeeemmmmeeeee22bb]ggggggg]	chr16:74330749-74330987(+)$1	238	73	113	12.1140
[ggggggg!!bb!!cccnnnnnccc22bb]ggggggg]cc	chr16:448876-449130(+)$1	254	24	64	14.5723
G:ccc[dddd"""bbcccmmmmccc]bb333dddd]ccce	chr5:176074553-176074803(+)$1	250	72	112	12.1123
cc[ffffff[bb"""cccnnnnnccc333bb]ffffff]c	chr1:205718982-205719196(-)$1	214	17	57	13.7971
c[eeeee####gggggggnnnnngggggggeeeee]ccc]	chr11:126146203-126146436(+)$1	233	51	91	12.3363
c[eeeee####gggggggnnnnngggggggeeeee]ccc]	chr11:126146103-126146389(+)$1	286	151	191	12.3363
!!ggggggg[ccc[ddddmmmmdddd22cccggggggg]d	chr3:48642031-48642314(-)$1	283	80	120	14.2318
!ffffff[===========lll===========ffffff5	chr7:23338931-23339323(+)$1	392	40	80	12.8221
%%bb####ccc"""cccooooooccc4444ccc4444bb5	chr1:151162429-151162704(-)$1	275	222	262	11.5773
[eeeee!!a!!bb[bboooooobbbb22a]eeeee]bbcc	chr10:98346473-98346743(-)$1	270	229	269	11.1361
ccc"""eeeeebb"""bbmmmmbb333bb]eeeee]ccc]	chr16:448089-448363(+)$1	274	176	216	13.0587
f!!ccc!!bb[ccc[cccmmmmcccccc]bb22cccffff	chr6:32157481-32157762(-)$1	281	126	166	13.6445
:iiiiiiiii$$$$$a[aooooooa]a4444iiiiiiiii	chr19:1592442-1592778(-)$1	336	137	177	13.3525
ccc!!eeeee####ddddmmmmddddeeeee22ccc]ccc	chr9:37784677-37784988(-)$1	311	99	139	12.1890
dddd[ccc!!ccc[ddddmmmmdddd22ccc22ccc]ddd	chr14:96001321-96001588(+)$1	267	37	77	12.7066
bb[ffffff[dddd[cccmmmmccc333dddd]ffffffb	chr12:132401767-132402097(+)$1	330	145	185	12.8108
!a[bb[dddd####cccnnnnnccc333dddd]bba22cc	chr12:122186016-122186340(+)$1	324	116	156	12.6769
c[a!!ccc[ccc"""cccnnnnnccc4444ccc333ccc2	chr9:127631497-127631826(+)$1	329	194	234	15.5629
dddd[ccc[ggggggg[bblllbb]gggggggccc]dddd	chr11:2405799-2406099(+)$1	300	1	41	11.6646
iiiiiiiii"""bb[cccnnnnnccc]bb333iiiiiiii	chr1:6845435-6845745(+)$1	310	218	258	14.4720
d!!ccc!!bb[ccc[cccmmmmcccccc]bb22cccdddd	chr6:32157579-32157840(-)$1	261	204	244	13.4015
eeeeeeee[a[a[bbcccooooooccc]bb]a]a22eeee	chr7:44887466-44887728(-)$1	262	180	220	11.9209
ffffffggggggg!!cccmmmmcccggggggg]ffffff]	chr7:140402564-140402846(+)$1	282	215	255	14.5624
gggg[ccc$$$$$eeeeemmmmeeeee333ccc]gggggg	chr3:48646597-48646837(-)$1	240	38	78	12.6062
aggggggg"""gggggggmmmmggggggg]ggggggg333	chr16:730351-730640(+)$1	289	35	75	14.3490
eeccc[bb[a"""ccc[ammmma]ccc333a]bbccc]ee	chrX:153714774-153715017(-)$1	243	98	138	14.0846
[eeeee[ddddccc!!ccclllccc22ccc22ddddeeee	chr2:171785700-171786016(+)$1	316	144	184	12.1676
cc:ffffff[a!!cccbbmmmmbb]ccc]a]ffffffccc	chr16:30092479-30092733(+)$1	254	83	123	11.7806

#otherMatches

#Seq PSSM
ACUUUUCAGCUAUCAACUUAACGUUAAUUUCAGGUGAAGG	chr1:52507108-52507370(-)$1	262	201	241	11.8874
UUUUGGAUUAGGAAUUGUUUUCUCACUUACCUUCUUUAAA	chr1:19948490-19948742(+)$1	252	110	150	12.4908
CUggcggcggcggcggcggcggcggcggcgCUGCUCCCGG	chr9:101867461-101867685(+)$1	224	74	114	12.1011
UGGCAGUGCAGAAGGUGGUGGUCCACCCCCUGGUGCUGCU	chr16:74330665-74330949(+)$1	284	157	197	12.1140
GCGCUUUUGGCAUGACUCAGAAGAGGUGCUGGUAAGUGCA	chr7:140402654-140402910(+)$1	256	125	165	14.5624
AUACGUUCGCAAGUGAGGGGAGCCUGAAUACUGCGGGGCG	chr7:73097996-73098275(+)$1	279	126	166	15.0552
gcccccggagccgggcgggcgucccgagccgggcccgcgg	chr2:54197781-54198040(-)$1	259	151	191	14.9484
GAAACUGCGGCUCGGGACCUGCGGUACCUGCUGUAGUCAC	chr12:96252735-96252955(+)$1	220	16	56	12.5451
GGUGUGGGACAGAGUGCGUGCGUGUGGUGUGUCCCCAAGG	chr8:25315623-25315952(-)$1	329	22	62	12.3994
CUCUCUCUUUUUACCCCCCUUAGGCUGAGGGUAAAAAGCU	chr14:75520197-75520463(-)$1	266	78	118	14.4624
AACGGCUGCUGGAAGGUAAGGGGGGCGGCGGGCGGCUGAA	chr12:111180411-111180678(-)$1	267	206	246	12.4320
CUACCGGAGUGUGGGCCGAAGCAGGCGCUGCAGCCGCGGA	chr7:150066658-150066926(+)$1	268	192	232	12.7404
AGAACCCGGAAUAAUGUACUGGUGCUUUACUCCAAAUCUG	chr3:122807914-122808175(+)$1	261	187	227	14.4917
CUGUCUUCGCCUUAGUACUCGUGUGAAGUUGGCGGGGACG	chr12:6602178-6602461(-)$1	283	61	101	12.2018
gccgccgccgccgcugccgUGGGGCUCgggcggcgacgga	chrX:20284609-20284862(-)$1	253	7	47	17.8875
UGGAGGAGUUGGGGAUCCGAGAGGAAUGUGGCGUGUUCGG	chr4:57301455-57301780(-)$1	325	144	184	13.9133
UAGUCUCCUUUCUGGACUGAGAAGAGAAGAAUGGAGAAGC	chr6:10749374-10749604(+)$1	230	74	114	12.5388
AGGCUGUAGGGUUUGGGUGUUUGCCGCGAUCUUCCUGCUG	chr6:31830404-31830686(-)$1	282	204	244	14.5049
GGGGGCUGUUUCCUAACAACCAUGUGAGGAAAAAGAACCC	chr14:53150492-53150726(-)$1	234	12	52	12.4603
cgagacagugccaggggcgggaggccggggccggggucug	chr19:2236081-2236355(-)$1	274	222	262	12.2010
GGCCUUCUUGCCUCUCAAGGUAUCUGUGAGGAGGCGAGGG	chr7:100283780-100284052(-)$1	272	231	271	11.8974
GCAGGAAAUGGACAGGCUACUAGCAUGGUCCAACUGCAGG	chr7:56136074-56136357(+)$1	283	96	136	12.0135
UGUGGUUCUCAAAUAUAGGCAUUCUGAUGGGAACUUGUGU	chr1:225970900-225971122(+)$1	222	106	146	12.0221
GGGGAACGCGCGCGCCGCCGUCCGCGGUCGCCCGUAGGUG	chr4:89444594-89444885(-)$1	291	74	114	11.9801
CCAGCGUGGACCACAUCAAGUUUGACUUGGAGAUCGCGGU	chr7:99036642-99036901(+)$1	259	79	119	15.1759
CCUCGCCGGCCUGUAGCGGACAGCGCGGGUCCCUGGGACG	chr7:140396527-140396743(+)$1	216	140	180	12.0510
GAGCGGCGCGGGCCUGCGUCUccgccccgagcccggcccg	chr19:1407575-1407876(+)$1	301	234	274	13.9509
gcccccggagccgggcgggcgucccgagccgggcccgcgg	chr2:54197731-54197981(-)$1	250	92	132	14.9484
AUGGGGGCCACGGUGUCUGCUGGUCCUGGUGUGCCCCUCA	chr12:132402863-132403120(+)$1	257	121	161	11.6234
UUGGGGCUGCUGCUGGCGCUGUUAGUGCCGGGCGGUGGUG	chr22:21996532-21996870(+)$1	338	135	175	11.4865
CCACUGUGUUUCGUGAAUUAGGUUCUCAGAGGCACUGUGA	chr4:122607343-122607604(-)$1	261	56	96	13.6534
GCCAUAAGAGAAGCUGGCUUGAUGAAAAGGCUCUCCAGUU	chr14:68087508-68087770(+)$1	262	132	172	11.5998
UGGCAGUGCAGAAGGUGGUGGUCCACCCCCUGGUGCUGCU	chr16:74330749-74330987(+)$1	238	73	113	12.1140
GGUGACCCCUGGGCUCUGGCUGGGAAACCCGGGUCGUGGG	chr16:448876-449130(+)$1	254	24	64	14.5723
AAGCACCAGCAUUUCCAGGAACCUGAGGUCGGCUGCUGCG	chr5:176074553-176074803(+)$1	250	72	112	12.1123
GGGUGGGGCGCCGAGCGCGCGGGGUGGGGGGGGUCCUGGU	chr1:205718982-205719196(-)$1	214	17	57	13.7971
UUUCUGCAGUUCGUAACCGCACUGGUUGUGGCAGGUAUGU	chr11:126146203-126146436(+)$1	233	51	91	12.3363
UUUCUGCAGUUCGUAACCGCACUGGUUGUGGCAGGUAUGU	chr11:126146103-126146389(+)$1	286	151	191	12.3363
CUGGUUGAUAUCUGGUUCCAGGGAACAAAGAAUCGGCCUG	chr3:48642031-48642314(-)$1	283	80	120	14.2318
AUGGGGCCGGGCGGCCGUGUGGCGCGGCUGCUCGCCCCAC	chr7:23338931-23339323(+)$1	392	40	80	12.8221
AGGCAAGAUCCGGGCCUGGGAAAAGGGAGGGGAGGAGGCA	chr1:151162429-151162704(-)$1	275	222	262	11.5773
CGGGCGGACGAGCACGAACACACGGUGAggcgccccggcc	chr10:98346473-98346743(-)$1	270	229	269	11.1361
GCGACAGGCCUUGAAACUCCACAGCAGCACAGGCCCCGUC	chr16:448089-448363(+)$1	274	176	216	13.0587
AUUGGUGAGUGGGGAGCCUGGGGGCCCUGGCGAGCCUCCC	chr6:32157481-32157762(-)$1	281	126	166	13.6445
AGCCGGGCGCAAUGGAGCGGAAGAGGUGGGAGUGCCCGGC	chr19:1592442-1592778(-)$1	336	137	177	13.3525
ACCGUUGAGCCUGAAUGCUAGAGCGUGCUCGCGGGUGCGC	chr9:37784677-37784988(-)$1	311	99	139	12.1890
GGCCGGGGAGCGCUCUGGGUGGCCAGCUGUGGGCCCGGGC	chr14:96001321-96001588(+)$1	267	37	77	12.7066
GGCGGGAGUCAGGAUGCUCCUGAGCCCUUCCUUGCUCUCC	chr12:132401767-132402097(+)$1	330	145	185	12.8108
gCACUGGGGUAGAAGGUGGGAGGCUGGGGCCCGGGGAGUC	chr12:122186016-122186340(+)$1	324	116	156	12.6769
GAGCGAGGUGGACGGGCUCCUGCGGCAAUAUCCUUCCCUG	chr9:127631497-127631826(+)$1	329	194	234	15.5629
GCCCGGCCACUUGGGAGGCGGGGCAUCCUGGGGGCGGGGC	chr11:2405799-2406099(+)$1	300	1	41	11.6646
GGGGCUggggggcggcgcggcgggcggcgggacccggccc	chr1:6845435-6845745(+)$1	310	218	258	14.4720
AUUGGUGAGUGGGGAGCCUGGGGGCCCUGGCGAGCCUCCC	chr6:32157579-32157840(-)$1	261	204	244	13.4015
ccgggggcacgggGCCUGGGAGAGCAGAGCGCGGAGGCCC	chr7:44887466-44887728(-)$1	262	180	220	11.9209
GCGCUUUUGGCAUGACUCAGAAGAGGUGCUGGUAAGUGCA	chr7:140402564-140402846(+)$1	282	215	255	14.5624
GGACCUGGGAGGUGGGGAGCGAUCCCCUGACCGAGUCCUC	chr3:48646597-48646837(-)$1	240	38	78	12.6062
CCCCGGCCGGAAGUUCCGGCGGCGGAGCUGGGCCGGGCCC	chr16:730351-730640(+)$1	289	35	75	14.3490
AGCUGACGGUGAAGGCGCUGCAGGGCCGCGAGUGCAGCCU	chrX:153714774-153715017(-)$1	243	98	138	14.0846
GCCGCCAUGGGCUCCUCGCAAAGCGUCGAGAUCCCGGGCG	chr2:171785700-171786016(+)$1	316	144	184	12.1676
UCUUCUCCUGUCUCCAGAGAGAUCUUGGUAGAGGAGAGCA	chr16:30092479-30092733(+)$1	254	83	123	11.7806

#DB
.(((((((.((((.(((.....))).))...)).))))))	chr1:52507108-52507370(-)$1	1	201	241	11.8874
(((((((..(((((.((......)).)).)))..))))))	chr1:19948490-19948742(+)$1	1	110	150	12.4908
((((.(((((((.((.((....)).)).))))))).))))	chr9:101867461-101867685(+)$1	1	74	114	12.1011
(((((((((((..(((((....)))))..)).))))))).	chr16:74330665-74330949(+)$1	1	157	197	12.1140
(((((((((((((..(((....)))))))))).)))))).	chr7:140402654-140402910(+)$1	1	125	165	14.5624
...((((((((.((((((....)))...)))))).)))))	chr7:73097996-73098275(+)$1	1	126	166	15.0552
((((((((.(((.((((((...)))..))).)))))).))	chr2:54197781-54198040(-)$1	1	151	191	14.9484
(..((((((((..((((((...))).)))))))))))..)	chr12:96252735-96252955(+)$1	1	16	56	12.5451
..((.((((((.(.(((......))).).))))))))...	chr8:25315623-25315952(-)$1	1	22	62	12.3994
.((((.((((((((((((....))....))))))))))..	chr14:75520197-75520463(-)$1	1	78	118	14.4624
..((((((((.(..(.(......).)..).))))))))..	chr12:111180411-111180678(-)$1	1	206	246	12.4320
((.((((..((((((((......))).)))))..).))).	chr7:150066658-150066926(+)$1	1	192	232	12.7404
(((....(((.(((.(((....))).))).)))...))))	chr3:122807914-122808175(+)$1	1	187	227	14.4917
).(((((((((....(((....))).....)))))))))(	chr12:6602178-6602461(-)$1	1	61	101	12.2018
.(((.(((((((...(((....)))...))))))).))).	chrX:20284609-20284862(-)$1	1	7	47	17.8875
((((.(.((((.(..(((....))).).)))).).)))))	chr4:57301455-57301780(-)$1	1	144	184	13.9133
(..(((((.((((...((....))...)))).))))).))	chr6:10749374-10749604(+)$1	1	74	114	12.5388
((((.((((((.((((((....))).)))...)))))).)	chr6:31830404-31830686(-)$1	1	204	244	14.5049
(((..((.((((((.(((....))).)))))).))..)))	chr14:53150492-53150726(-)$1	1	12	52	12.4603
(.((((...(((..((.(....).))..)))....)))).	chr19:2236081-2236355(-)$1	1	222	262	12.2010
))))(((((((((((((((....)).))).))))))))))	chr7:100283780-100284052(-)$1	1	231	271	11.8974
((((....(((((..(((...)))...))))).)))))))	chr7:56136074-56136357(+)$1	1	96	136	12.0135
...((((((((....(((.....))).))))))))..)))	chr1:225970900-225971122(+)$1	1	106	146	12.0221
(((.(.((((.(((((((.....)))).))).))).).).	chr4:89444594-89444885(-)$1	1	74	114	11.9801
(((.(((((.(((..(((....)))..)))...))))).)	chr7:99036642-99036901(+)$1	1	79	119	15.1759
(.((.(.(((((((.((.....)))))))))...).)).)	chr7:140396527-140396743(+)$1	1	140	180	12.0510
((((((((((((((.(((....)))...).)))))...))	chr19:1407575-1407876(+)$1	1	234	274	13.9509
((((((((.(((.((((((...)))..))).)))))).))	chr2:54197731-54197981(-)$1	1	92	132	14.9484
(((((((((((.(.(.((...)).).).))).))))).))	chr12:132402863-132403120(+)$1	1	121	161	11.6234
.(((.(((((((((((((((...)))))).))))))))).	chr22:21996532-21996870(+)$1	1	135	175	11.4865
)(((.(((((((..((((...))))...))))))).))).	chr4:122607343-122607604(-)$1	1	56	96	13.6534
(((..((((((.(((..(.....)....)))))))...))	chr14:68087508-68087770(+)$1	1	132	172	11.5998
(((((((((((..(((((....)))))..)).))))))).	chr16:74330749-74330987(+)$1	1	73	113	12.1140
.(((((((..((..(((.....)))..)).))))))).))	chr16:448876-449130(+)$1	1	24	64	14.5723
(.(((.((((...(((((....))).))...)))).)))(	chr5:176074553-176074803(+)$1	1	72	112	12.1123
((.((((((.((...(((.....)))...)).)))))).)	chr1:205718982-205719196(-)$1	1	17	57	13.7971
(.(((((....(((((((.....)))))))))))).))).	chr11:126146203-126146436(+)$1	1	51	91	12.3363
(.(((((....(((((((.....)))))))))))).))).	chr11:126146103-126146389(+)$1	1	151	191	12.3363
..(((((((.(((.((((....))))..)))))))))).)	chr3:48642031-48642314(-)$1	1	80	120	14.2318
.((((((.(((((((((((...))))))))))))))))).	chr7:23338931-23339323(+)$1	1	40	80	12.8221
..((....(((...(((......)))....)))....)).	chr1:151162429-151162704(-)$1	1	222	262	11.5773
.(((((..(..((.((......))))..).))))).))))	chr10:98346473-98346743(-)$1	1	229	269	11.1361
(((...(((((((...((....))...)).))))).))).	chr16:448089-448363(+)$1	1	176	216	13.0587
(..(((..((.(((.(((....)))))).))..)))))))	chr6:32157481-32157762(-)$1	1	126	166	13.6445
.(((((((((.....(.(......).)....)))))))))	chr19:1592442-1592778(-)$1	1	137	177	13.3525
(((..(((((....((((....)))))))))..))).)))	chr9:37784677-37784988(-)$1	1	99	139	12.1890
((((.(((..(((.((((....))))..)))..))).)))	chr14:96001321-96001588(+)$1	1	37	77	12.7066
((.((((((.((((.(((....)))...)))).)))))))	chr12:132401767-132402097(+)$1	1	145	185	12.8108
.(.((.((((....(((.....)))...)))).)))..))	chr12:122186016-122186340(+)$1	1	116	156	12.6769
(.(..(((.(((...(((.....)))....)))...))).	chr9:127631497-127631826(+)$1	1	194	234	15.5629
((((.(((.(((((((.((...)).)))))))))).))))	chr11:2405799-2406099(+)$1	1	1	41	11.6646
(((((((((...((.(((.....))).))...))))))))	chr1:6845435-6845745(+)$1	1	218	258	14.4720
(..(((..((.(((.(((....)))))).))..)))))))	chr6:32157579-32157840(-)$1	1	204	244	13.4015
)))(((((.(.(.(((((......))).)).).)..))))	chr7:44887466-44887728(-)$1	1	180	220	11.9209
(((((((((((((..(((....)))))))))).)))))).	chr7:140402564-140402846(+)$1	1	215	255	14.5624
((((.(((.....(((((....)))))...))).))))))	chr3:48646597-48646837(-)$1	1	38	78	12.6062
((((((((...(((((((....))))))).)))))))...	chr16:730351-730640(+)$1	1	35	75	14.3490
(((((.((.(...(((.(....).)))...).))))).))	chrX:153714774-153715017(-)$1	1	98	138	14.0846
.(((((.(((((((..(((...)))..)))..))))))))	chr2:171785700-171786016(+)$1	1	144	184	12.1676
)).((((((.(..(((((....)).))).).))))))(((	chr16:30092479-30092733(+)$1	1	83	123	11.7806

#PSSM
c : 0.18	g : 0.13	d : 0.11	! : 0.11	e : 0.08	f : 0.06	[ : 0.06	: : 0.03	b : 0.03	h : 0.03	# : 0.01	F : 0.01	" : 0.01	= : 0.01	G : 0.01	% : 0.01	i : 0.01	a : 0.01	
c : 0.18	g : 0.13	d : 0.11	! : 0.11	e : 0.09	[ : 0.08	f : 0.06	: : 0.03	h : 0.03	i : 0.03	# : 0.01	F : 0.01	" : 0.01	% : 0.01	b : 0.01	a : 0.01	
g : 0.18	c : 0.16	e : 0.11	d : 0.09	f : 0.06	! : 0.06	[ : 0.06	b : 0.05	h : 0.05	i : 0.05	# : 0.01	F : 0.01	" : 0.01	a : 0.01	: : 0.01	
g : 0.16	e : 0.15	c : 0.15	f : 0.09	d : 0.08	h : 0.08	b : 0.06	! : 0.06	i : 0.05	[ : 0.03	# : 0.01	F : 0.01	" : 0.01	
[ : 0.18	g : 0.15	e : 0.15	f : 0.09	c : 0.08	h : 0.06	! : 0.06	# : 0.05	i : 0.05	d : 0.03	= : 0.01	a : 0.01	" : 0.01	b : 0.01	
g : 0.16	e : 0.16	c : 0.15	f : 0.13	[ : 0.08	h : 0.06	i : 0.06	# : 0.05	a : 0.03	b : 0.03	d : 0.01	= : 0.01	" : 0.01	
g : 0.19	e : 0.15	c : 0.09	f : 0.09	h : 0.06	i : 0.06	# : 0.05	[ : 0.05	b : 0.05	! : 0.05	= : 0.03	a : 0.03	d : 0.03	" : 0.01	
g : 0.19	c : 0.13	e : 0.11	! : 0.08	f : 0.08	d : 0.08	h : 0.06	i : 0.06	# : 0.06	= : 0.03	[ : 0.03	" : 0.01	b : 0.01	
g : 0.15	[ : 0.13	f : 0.09	c : 0.08	d : 0.08	e : 0.08	! : 0.06	i : 0.06	h : 0.05	= : 0.05	" : 0.03	# : 0.03	b : 0.03	a : 0.01	$ : 0.01	
c : 0.16	g : 0.11	d : 0.09	b : 0.08	e : 0.08	[ : 0.08	h : 0.05	f : 0.05	= : 0.05	i : 0.05	! : 0.05	# : 0.03	" : 0.03	a : 0.03	$ : 0.01	
c : 0.18	g : 0.11	[ : 0.09	b : 0.08	d : 0.08	e : 0.06	" : 0.06	# : 0.06	f : 0.05	= : 0.05	h : 0.03	i : 0.03	$ : 0.03	! : 0.01	a : 0.01	
c : 0.21	g : 0.16	[ : 0.09	b : 0.08	! : 0.06	# : 0.06	" : 0.06	= : 0.05	e : 0.05	a : 0.03	d : 0.03	$ : 0.03	f : 0.01	i : 0.01	
c : 0.18	! : 0.13	g : 0.11	" : 0.09	b : 0.08	[ : 0.06	# : 0.06	a : 0.05	= : 0.05	e : 0.05	d : 0.03	$ : 0.03	f : 0.01	i : 0.01	
c : 0.21	! : 0.15	[ : 0.09	" : 0.09	b : 0.08	g : 0.08	e : 0.06	# : 0.06	= : 0.05	f : 0.01	a : 0.01	i : 0.01	$ : 0.01	d : 0.01	
c : 0.24	[ : 0.15	! : 0.09	b : 0.08	" : 0.08	d : 0.08	g : 0.06	e : 0.05	= : 0.03	a : 0.03	# : 0.03	f : 0.01	$ : 0.01	
c : 0.55	d : 0.08	b : 0.06	g : 0.06	[ : 0.05	e : 0.05	= : 0.03	" : 0.03	! : 0.03	f : 0.01	a : 0.01	
c : 0.53	b : 0.13	d : 0.08	[ : 0.06	e : 0.05	g : 0.05	a : 0.01	f : 0.01	! : 0.01	= : 0.01	o : 0.01	
c : 0.41	b : 0.13	o : 0.09	d : 0.08	n : 0.06	a : 0.06	e : 0.05	g : 0.05	f : 0.01	= : 0.01	
m : 0.48	n : 0.19	o : 0.13	c : 0.06	l : 0.05	b : 0.03	f : 0.01	= : 0.01	
m : 0.49	n : 0.19	l : 0.15	o : 0.13	f : 0.01	
m : 0.49	n : 0.19	l : 0.16	o : 0.13	
m : 0.49	n : 0.19	o : 0.13	l : 0.11	c : 0.01	b : 0.01	d : 0.01	
c : 0.38	b : 0.15	n : 0.13	o : 0.11	d : 0.06	e : 0.05	a : 0.03	m : 0.01	l : 0.01	= : 0.01	g : 0.01	
c : 0.49	b : 0.16	d : 0.08	e : 0.05	] : 0.05	g : 0.05	a : 0.03	o : 0.03	f : 0.01	= : 0.01	
c : 0.51	d : 0.08	b : 0.06	] : 0.06	g : 0.06	e : 0.05	3 : 0.05	4 : 0.03	a : 0.03	f : 0.01	= : 0.01	
c : 0.19	] : 0.18	3 : 0.15	g : 0.11	2 : 0.08	d : 0.06	b : 0.05	e : 0.05	4 : 0.03	a : 0.01	5 : 0.01	f : 0.01	= : 0.01	
3 : 0.16	2 : 0.16	c : 0.15	g : 0.11	b : 0.06	e : 0.06	] : 0.06	4 : 0.06	a : 0.05	f : 0.03	5 : 0.01	d : 0.01	= : 0.01	
c : 0.18	3 : 0.15	2 : 0.11	g : 0.11	b : 0.09	] : 0.08	4 : 0.08	e : 0.05	f : 0.03	a : 0.01	5 : 0.01	d : 0.01	h : 0.01	= : 0.01	
c : 0.24	g : 0.16	3 : 0.08	] : 0.08	d : 0.06	b : 0.06	a : 0.05	e : 0.05	4 : 0.05	2 : 0.03	= : 0.03	f : 0.03	5 : 0.01	h : 0.01	
c : 0.19	g : 0.15	] : 0.15	3 : 0.09	b : 0.09	d : 0.06	e : 0.05	4 : 0.05	h : 0.03	f : 0.03	= : 0.03	5 : 0.01	a : 0.01	
c : 0.19	g : 0.15	e : 0.13	3 : 0.08	b : 0.08	] : 0.06	d : 0.06	h : 0.05	= : 0.05	f : 0.03	i : 0.03	4 : 0.01	a : 0.01	2 : 0.01	
g : 0.15	c : 0.13	] : 0.11	e : 0.11	d : 0.08	2 : 0.08	3 : 0.06	h : 0.05	f : 0.05	= : 0.05	i : 0.05	b : 0.01	4 : 0.01	a : 0.01	
c : 0.15	g : 0.13	] : 0.13	e : 0.11	2 : 0.09	f : 0.06	i : 0.06	h : 0.05	= : 0.05	d : 0.05	b : 0.03	3 : 0.03	4 : 0.01	
c : 0.15	g : 0.13	f : 0.13	e : 0.13	h : 0.06	i : 0.06	3 : 0.05	b : 0.05	d : 0.05	] : 0.03	2 : 0.03	= : 0.03	a : 0.03	4 : 0.03	
g : 0.18	c : 0.15	f : 0.13	e : 0.13	h : 0.06	i : 0.06	d : 0.05	] : 0.03	= : 0.03	a : 0.03	3 : 0.03	b : 0.03	4 : 0.03	2 : 0.01	
] : 0.19	g : 0.13	f : 0.11	c : 0.11	e : 0.08	3 : 0.06	i : 0.06	h : 0.05	2 : 0.05	= : 0.03	d : 0.03	b : 0.01	4 : 0.01	a : 0.01	
c : 0.18	g : 0.13	f : 0.13	e : 0.13	d : 0.06	i : 0.06	h : 0.05	b : 0.05	2 : 0.05	= : 0.03	3 : 0.03	] : 0.03	a : 0.01	4 : 0.01	
c : 0.16	g : 0.11	f : 0.11	e : 0.11	] : 0.11	d : 0.08	i : 0.06	b : 0.05	3 : 0.05	2 : 0.03	= : 0.03	h : 0.03	4 : 0.01	
c : 0.21	g : 0.13	e : 0.13	d : 0.09	f : 0.08	] : 0.08	i : 0.06	2 : 0.05	h : 0.03	b : 0.03	4 : 0.01	= : 0.01	a : 0.01	3 : 0.01	
] : 0.19	e : 0.15	g : 0.13	c : 0.13	d : 0.09	2 : 0.05	f : 0.03	h : 0.03	b : 0.03	5 : 0.03	i : 0.03	4 : 0.01	= : 0.01	: : 0.01	3 : 0.01	

#score	784.3898950140501
#seq	60
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_UTR_m3_run1.txt

#BEAR
#eeeeemmmmeeee	chr22:20109971-20110227(+)$1	256	173	187	8.6580
!eeeeellleeeee	chr1:2325766-2326036(+)$1	270	94	108	11.1071
eeeeemmmmeeeee	chr22:50013564-50013841(-)$1	277	218	232	7.9807
Ceeeeellleeeee	chr6:109702652-109702980(-)$1	328	177	191	9.8492
!eeeeennnnneee	chr4:761857-762090(-)$1	233	147	161	7.8230
b[ddddllldddd]	chr2:55237169-55237424(-)$1	255	142	156	7.5190
deeeeellleeeee	chr6:34664394-34664666(-)$1	272	151	165	10.7142
ieeeeellleeeee	chr8:144678734-144679005(-)$1	271	134	148	10.8478
eeddddllldddd]	chr11:61583843-61584097(-)$1	254	55	69	8.0102
[eeeeemmmmeeee	chr6:33168761-33169071(+)$1	310	200	214	8.6743
feeeeellleeeee	chr22:19429491-19429764(-)$1	273	32	46	10.6879
c[ddddllldddd]	chr1:2325730-2325966(+)$1	236	93	107	7.7015
"eeeeellleeeee	chr22:50013894-50014168(-)$1	274	54	68	11.0943
[eeeeellleeeee	chr6:43589449-43589702(-)$1	253	42	56	11.0826

#otherMatches

#Seq PSSM
GCACACGGGGGUGU	chr22:20109971-20110227(+)$1	256	173	187	8.6580
AGGGAAGAUUUCCC	chr1:2325766-2326036(+)$1	270	94	108	11.1071
agcuguucacagcu	chr22:50013564-50013841(-)$1	277	218	232	7.9807
AGUGAAAACUUCAC	chr6:109702652-109702980(-)$1	328	177	191	9.8492
CGGGCGCCACUCGC	chr4:761857-762090(-)$1	233	147	161	7.8230
AGCUGCAAAGCAGA	chr2:55237169-55237424(-)$1	255	142	156	7.5190
GAGGCCCGGGGCCU	chr6:34664394-34664666(-)$1	272	151	165	10.7142
CUGAUGAGACGUCA	chr8:144678734-144679005(-)$1	271	134	148	10.8478
CGGGCAGGAUGCCA	chr11:61583843-61584097(-)$1	254	55	69	8.0102
CCUGUGUAGGUAUA	chr6:33168761-33169071(+)$1	310	200	214	8.6743
aggguuugaggcuu	chr22:19429491-19429764(-)$1	273	32	46	10.6879
CGGGAUUGCGUCUG	chr1:2325730-2325966(+)$1	236	93	107	7.7015
gagcuaaaauaguu	chr22:50013894-50014168(-)$1	274	54	68	11.0943
AUCCCACAAUGGGA	chr6:43589449-43589702(-)$1	253	42	56	11.0826

#DB
.(((((....))))	chr22:20109971-20110227(+)$1	1	173	187	8.6580
.(((((...)))))	chr1:2325766-2326036(+)$1	1	94	108	11.1071
(((((....)))))	chr22:50013564-50013841(-)$1	1	218	232	7.9807
)(((((...)))))	chr6:109702652-109702980(-)$1	1	177	191	9.8492
.(((((.....)))	chr4:761857-762090(-)$1	1	147	161	7.8230
(.((((...)))).	chr2:55237169-55237424(-)$1	1	142	156	7.5190
((((((...)))))	chr6:34664394-34664666(-)$1	1	151	165	10.7142
((((((...)))))	chr8:144678734-144679005(-)$1	1	134	148	10.8478
((((((...)))).	chr11:61583843-61584097(-)$1	1	55	69	8.0102
.(((((....))))	chr6:33168761-33169071(+)$1	1	200	214	8.6743
)(((((...)))))	chr22:19429491-19429764(-)$1	1	32	46	10.6879
(.((((...)))).	chr1:2325730-2325966(+)$1	1	93	107	7.7015
.(((((...)))))	chr22:50013894-50014168(-)$1	1	54	68	11.0943
.(((((...)))))	chr6:43589449-43589702(-)$1	1	42	56	11.0826

#PSSM
! : 0.14	e : 0.14	[ : 0.14	# : 0.07	C : 0.07	b : 0.07	d : 0.07	i : 0.07	f : 0.07	c : 0.07	" : 0.07	
e : 0.85	[ : 0.14	
e : 0.78	d : 0.21	
e : 0.78	d : 0.21	
e : 0.78	d : 0.21	
e : 0.71	d : 0.21	m : 0.07	
l : 0.71	m : 0.21	n : 0.07	
l : 0.71	m : 0.21	n : 0.07	
l : 0.71	m : 0.21	n : 0.07	
e : 0.57	d : 0.21	m : 0.14	n : 0.07	
e : 0.71	d : 0.21	n : 0.07	
e : 0.78	d : 0.21	
e : 0.78	d : 0.21	
e : 0.78	] : 0.21	

#score	131.75039303643567
#seq	14
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_transcript_m3_run2.txt

#BEAR
ee[ccc"""cccmmmmccc]ccc22e	chr1:173456967-173457201(+)$1	234	133	159	10.7160
gggggg[ccc[allla]ccc]ggggg	chr12:123997679-123998010(-)$1	331	178	204	9.6439
==========oooooo==========	chr3:5025362-5025602(+)$1	240	172	198	9.2350
gg"""a!!ddddmmmmdddd22a22g	chr5:179248459-179248763(+)$1	304	157	183	13.5894
hhhh####ddddmmmmddddhhhhhh	chr16:28854098-28854393(-)$1	295	94	120	11.8754
[ccc[bb[ddddmmmmdddd]bb]cc	chr19:17321100-17321399(+)$1	299	206	232	12.7907
[ggggggg[cccmmmmccc22ggggg	chr19:5206335-5206587(-)$1	252	154	180	11.3692
[ccc[cccddddmmmmdddd333ccc	chr2:220037010-220037280(-)$1	270	203	229	13.2667
eee[ccc[ddddmmmmdddd]cccee	chr14:104378774-104379094(-)$1	320	235	261	13.5659
eedddd!!ddddmmmmdddddddd]e	chr3:184428321-184428574(-)$1	253	197	223	12.3182
eeeeecccddddmmmmdddd]cccCC	chr19:1408279-1408529(+)$1	250	77	103	10.4516
gggggg!!acccmmmmccc]a22ggg	chr19:54704974-54705233(+)$1	259	38	64	11.4456
gggggg!!ddddmmmmdddd]ggggg	chr3:152183393-152183635(+)$1	242	213	239	14.5401
!iiiiiiiiibbmmmmbb]iiiiiii	chr1:166826496-166826771(-)$1	275	207	233	9.8623
gggggg!!ddddlllddddggggggg	chr17:16344854-16345134(+)$1	280	221	247	12.0080
ceeeee!!ddddmmmmdddd]eeeee	chr2:10476501-10476738(+)$1	237	7	33	13.5432
a[eeeee[ddddmmmmdddd22eeee	chr2:61764232-61764498(-)$1	266	0	26	13.2090
fff[ccc[ddddmmmmddddccc]ff	chr2:231577499-231577806(+)$1	307	232	258	12.7007
bb[iiiiiiiiimmmmiiiiiiiiib	chr5:43290976-43291286(-)$1	310	156	182	9.8249
c[eeeee[ddddmmmmdddd]eeeee	chr8:145107126-145107378(-)$1	252	90	116	13.2896
eeeebb!!ddddmmmmdddd22bb]e	chr1:93604298-93604553(+)$1	255	137	163	12.7963
=========[bbmmmmbb]=======	chr6:34555452-34555704(-)$1	252	118	144	10.2333
cdddd"""ddddmmmmdddd22dddd	chr9:96432980-96433345(+)$1	365	175	201	12.9404
eedddd"""ddddllldddd333ddd	chr4:1241166-1241485(-)$1	319	143	169	10.7343
$$$dddd[ddddmmmmdddd]dddd4	chr7:914048-914339(+)$1	291	79	105	11.9188
b[eeeee[ddddmmmmdddd]eeeee	chr17:76123959-76124226(-)$1	267	238	264	13.0093
iiiiiii!!ccclllccc22iiiiii	chr3:38534305-38534617(+)$1	312	117	143	9.6997
""==========mmmm==========	chr4:174252911-174253154(-)$1	243	144	170	11.3218
ccc[bb!!ddddmmmmdddd22bb]c	chr2:70902160-70902519(-)$1	359	195	221	13.0353
d[ccc"""ddddllldddd333ccc]	chr4:719085-719351(+)$1	266	65	91	12.1646
hhhiiiiiiiiimmmmiiiiiiiii:	chr22:41855752-41856009(-)$1	257	96	122	9.2008
eeee!!bbddddmmmmdddd]bb444	chr12:6879222-6879429(+)$1	207	86	112	11.8025
cc[dddd[ddddllldddd22dddd]	chr16:417521-417778(-)$1	257	23	49	10.6006
gggggg!!ddddmmmmdddd]ggggg	chr17:61909564-61909810(-)$1	246	154	180	14.5401
f[eeeee[ddddmmmmddddeeeeef	chr11:1773921-1774211(-)$1	290	228	254	12.5048
ff!!ccc!!cccmmmmccc]ccc22f	chr11:1994753-1995017(+)$1	264	228	254	10.5394
=====!!eeeeemmmmeeeee=====	chr11:64084820-64085088(-)$1	268	131	157	11.0395
ccc[ccc[cccooooooccc]ccc]c	chr22:49975083-49975346(-)$1	263	85	111	9.2284
++eeeee[ddddmmmmdddd]eeeee	chr4:129029784-129030020(+)$1	236	85	111	11.7199
dddd[bb[ddddmmmmdddd]bbddd	chr19:1412426-1412663(+)$1	237	67	93	11.9042
gggggg!!ddddllldddd22ggggg	chrX:67945430-67945711(+)$1	281	151	177	12.3413
cc[eeeee[cccmmmmccc]eeeeec	chr2:122097858-122098140(-)$1	282	138	164	9.7891
fffff"""ddddllldddd4444fff	chr2:10580580-10580945(-)$1	365	327	353	10.9121
!ggggggg[a[ammmma22a]ggggg	chr1:226107672-226107955(-)$1	283	181	207	10.2484
c[a!!a[eeeeemmmmeeeee]a]a]	chr21:45945119-45945451(+)$1	332	110	136	10.2500
####ccc[ddddmmmmdddd]ccc44	chr19:34890529-34890790(+)$1	261	81	107	13.3670
ggggggg[ddddllldddd22ggggg	chr4:174252954-174253173(-)$1	219	100	126	12.0170
ffffff!!ddddmmmmdddd]fffff	chr13:92001101-92001392(+)$1	291	49	75	12.7812
c!!ccc[eeeeemmmmeeeee]ccc3	chr19:46701099-46701359(-)$1	260	105	131	10.3034
!dddd"""ddddmmmmdddd333ddd	chrX:70685604-70685883(+)$1	279	64	90	13.4657

#otherMatches

#Seq PSSM
CAAGGUUUUUAGGUUGCUAUACCAAU	chr1:173456967-173457201(+)$1	234	133	159	10.7160
GGAGUUUGUGGCUUUGGCACUGACUU	chr12:123997679-123998010(-)$1	331	178	204	9.6439
guguguaugugcgugugcgugcacau	chr3:5025362-5025602(+)$1	240	172	198	9.2350
GUAAACAAGCGCGGGGGUGCGGGGGA	chr5:179248459-179248763(+)$1	304	157	183	13.5894
UUGAGUGUGCAGAUCUCUGCUCAGCU	chr16:28854098-28854393(-)$1	295	94	120	11.8754
UGCAUGCUGGGGAGGCCCCUUGCCUG	chr19:17321100-17321399(+)$1	299	206	232	12.7907
CGUCCUCCCCCAGCGGUGGUAGGGGG	chr19:5206335-5206587(-)$1	252	154	180	11.3692
GGUGACCAGGGACAUGUCCCAGAUGG	chr2:220037010-220037280(-)$1	270	203	229	13.2667
AGAUGCACUGCUACCUGGUACUGCUU	chr14:104378774-104379094(-)$1	320	235	261	13.5659
CUUUGAUGGUUUGAAGGAACUCAGCA	chr3:184428321-184428574(-)$1	253	197	223	12.3182
CGCCUCCCGGCUUCCUGGCCAGGGGG	chr19:1408279-1408529(+)$1	250	77	103	10.4516
UUCUCUCCCGCGCAGGCGCAGACGGG	chr19:54704974-54705233(+)$1	259	38	64	11.4456
GCGUGUUUCAUGUAUUCAUGCAUAUG	chr3:152183393-152183635(+)$1	242	213	239	14.5401
UGUGCCUGGAAUGGAGAUAUUUAGGU	chr1:166826496-166826771(-)$1	275	207	233	9.8623
cccaggcuggucucaggcuccugggc	chr17:16344854-16345134(+)$1	280	221	247	12.0080
agcguauugagaauguucuucuaugc	chr2:10476501-10476738(+)$1	237	7	33	13.5432
GGAGGCGGCCUCGGGAGGGGAGCGCU	chr2:61764232-61764498(-)$1	266	0	26	13.2090
ggcagccgcgggagccccugggcagc	chr2:231577499-231577806(+)$1	307	232	258	12.7007
CAUGUUAUGUAAAUUUUUAUGUGACU	chr5:43290976-43291286(-)$1	310	156	182	9.8249
GAGGGCGAGGUGGGGACGCCCUGCCC	chr8:145107126-145107378(-)$1	252	90	116	13.2896
GUAUUUUUAGAAAUUUUUCUUUAACA	chr1:93604298-93604553(+)$1	255	137	163	12.7963
GUGUGUGUGGAUGGAUGUGCACGUGU	chr6:34555452-34555704(-)$1	252	118	144	10.2333
CACCUGAAGCUGAGGGCAGCGGGGGU	chr9:96432980-96433345(+)$1	365	175	201	12.9404
CUGCGGUUUGGGGGUCCCCCUUUCUG	chr4:1241166-1241485(-)$1	319	143	169	10.7343
AUGUUGUGUUUUCAGAAAAAGACAAA	chr7:914048-914339(+)$1	291	79	105	11.9188
CGUCUUUGCUCCUGCUGGAGGGAGGG	chr17:76123959-76124226(-)$1	267	238	264	13.0093
UUUUAGAAAUGAGUGUCAAGUUUGAA	chr3:38534305-38534617(+)$1	312	117	143	9.6997
AUGUUGAAUGUUCCUAAAUAUUUAAU	chr4:174252911-174253154(-)$1	243	144	170	11.3218
UGGGCUUUGGCUGACUGGCUUUGGGC	chr2:70902160-70902519(-)$1	359	195	221	13.0353
UAAUGAGAAGUUGUGGACUAGACGUG	chr4:719085-719351(+)$1	266	65	91	12.1646
GUGGGGGGGCAGGGCUCUGCCCUCUU	chr22:41855752-41856009(-)$1	257	96	122	9.2008
UUCUGGCUCCUCAGAUGAGGAAGAAG	chr12:6879222-6879429(+)$1	207	86	112	11.8025
GUGGCGGAGCUGAUCCAGCAGCUGCA	chr16:417521-417778(-)$1	257	23	49	10.6006
CUCUCCAGCGGCUUGGGCCGGGGAGG	chr17:61909564-61909810(-)$1	246	154	180	14.5401
GUGCUGGUGUGCUCUUGUGCCUGGUC	chr11:1773921-1774211(-)$1	290	228	254	12.5048
AGGGCUGGGCUGUGAGCAGGCAGGAC	chr11:1994753-1995017(+)$1	264	228	254	10.5394
GGGGGUGGGGUCCCGUGGCUUCCCCC	chr11:64084820-64085088(-)$1	268	131	157	11.0395
uauguauguauggauggauaggugga	chr22:49975083-49975346(-)$1	263	85	111	9.2284
GAUAUCAACUUGGGUCCAAGAUGAUA	chr4:129029784-129030020(+)$1	236	85	111	11.7199
CCUGGCUUGGUCCCCCGGCCCAGCAG	chr19:1412426-1412663(+)$1	237	67	93	11.9042
UCUGGAAGGCCUGAGGGGCACUUCAG	chrX:67945430-67945711(+)$1	281	151	177	12.3413
GGUCUGUGUGGGGCCCCUUUCACAGC	chr2:122097858-122098140(-)$1	282	138	164	9.7891
AGUGCCCCUCAGCUGCUGAACAAGCA	chr2:10580580-10580945(-)$1	365	327	353	10.9121
AGGAGAAAACAGGAAACGGGCUUUCU	chr1:226107672-226107955(-)$1	283	181	207	10.2484
aguuagguaguuaaucagcuagucag	chr21:45945119-45945451(+)$1	332	110	136	10.2500
GUCACUUCUGCAGCCAUGUAUGAGCA	chr19:34890529-34890790(+)$1	261	81	107	13.3670
UUAAAAAAUGCAGGUUGUAGCUUUUU	chr4:174252954-174253173(-)$1	219	100	126	12.0170
GAGCCCCCGCCCCUCUGGGCCGGGCU	chr13:92001101-92001392(+)$1	291	49	75	12.7812
GGGGAGGggccaggugugguugcuca	chr19:46701099-46701359(-)$1	260	105	131	10.3034
AGGUAAAAGUCUGAAAGGAUAUAUGC	chrX:70685604-70685883(+)$1	279	64	90	13.4657

#DB
((.(((...(((....))).)))..)	chr1:173456967-173457201(+)$1	1	133	159	10.7160
((((((.(((.(...).))).)))))	chr12:123997679-123998010(-)$1	1	178	204	9.6439
((((((((((......))))))))))	chr3:5025362-5025602(+)$1	1	172	198	9.2350
((...(..((((....))))..)..)	chr5:179248459-179248763(+)$1	1	157	183	13.5894
((((....((((....))))))))))	chr16:28854098-28854393(-)$1	1	94	120	11.8754
.(((.((.((((....)))).)).))	chr19:17321100-17321399(+)$1	1	206	232	12.7907
.(((((((.(((....)))..)))))	chr19:5206335-5206587(-)$1	1	154	180	11.3692
.(((.(((((((....))))...)))	chr2:220037010-220037280(-)$1	1	203	229	13.2667
(((.(((.((((....)))).)))))	chr14:104378774-104379094(-)$1	1	235	261	13.5659
((((((..((((....)))))))).)	chr3:184428321-184428574(-)$1	1	197	223	12.3182
)))))(((((((....)))).)))((	chr19:1408279-1408529(+)$1	1	77	103	10.4516
((((((..((((....))).)..)))	chr19:54704974-54705233(+)$1	1	38	64	11.4456
((((((..((((....)))).)))))	chr3:152183393-152183635(+)$1	1	213	239	14.5401
.(((((((((((....)).)))))))	chr1:166826496-166826771(-)$1	1	207	233	9.8623
((((((..((((...)))))))))))	chr17:16344854-16345134(+)$1	1	221	247	12.0080
((((((..((((....)))).)))))	chr2:10476501-10476738(+)$1	1	7	33	13.5432
(.(((((.((((....))))..))))	chr2:61764232-61764498(-)$1	1	0	26	13.2090
(((.(((.((((....))))))).))	chr2:231577499-231577806(+)$1	1	232	258	12.7007
((.(((((((((....))))))))))	chr5:43290976-43291286(-)$1	1	156	182	9.8249
(.(((((.((((....)))).)))))	chr8:145107126-145107378(-)$1	1	90	116	13.2896
((((((..((((....))))..)).)	chr1:93604298-93604553(+)$1	1	137	163	12.7963
(((((((((.((....)).)))))))	chr6:34555452-34555704(-)$1	1	118	144	10.2333
)((((...((((....))))..))))	chr9:96432980-96433345(+)$1	1	175	201	12.9404
))((((...((((...))))...)))	chr4:1241166-1241485(-)$1	1	143	169	10.7343
...((((.((((....)))).)))).	chr7:914048-914339(+)$1	1	79	105	11.9188
(.(((((.((((....)))).)))))	chr17:76123959-76124226(-)$1	1	238	264	13.0093
(((((((..(((...)))..))))))	chr3:38534305-38534617(+)$1	1	117	143	9.6997
..((((((((((....))))))))))	chr4:174252911-174253154(-)$1	1	144	170	11.3218
(((.((..((((....))))..)).)	chr2:70902160-70902519(-)$1	1	195	221	13.0353
(.(((...((((...))))...))).	chr4:719085-719351(+)$1	1	65	91	12.1646
)))(((((((((....))))))))).	chr22:41855752-41856009(-)$1	1	96	122	9.2008
((((..((((((....)))).))...	chr12:6879222-6879429(+)$1	1	86	112	11.8025
((.((((.((((...))))..)))).	chr16:417521-417778(-)$1	1	23	49	10.6006
((((((..((((....)))).)))))	chr17:61909564-61909810(-)$1	1	154	180	14.5401
(.(((((.((((....))))))))))	chr11:1773921-1774211(-)$1	1	228	254	12.5048
((..(((..(((....))).)))..)	chr11:1994753-1995017(+)$1	1	228	254	10.5394
(((((..(((((....))))))))))	chr11:64084820-64085088(-)$1	1	131	157	11.0395
(((.(((.(((......))).))).)	chr22:49975083-49975346(-)$1	1	85	111	9.2284
..(((((.((((....)))).)))))	chr4:129029784-129030020(+)$1	1	85	111	11.7199
((((.((.((((....)))).)))))	chr19:1412426-1412663(+)$1	1	67	93	11.9042
((((((..((((...))))..)))))	chrX:67945430-67945711(+)$1	1	151	177	12.3413
((.(((((.(((....))).))))))	chr2:122097858-122098140(-)$1	1	138	164	9.7891
(((((...((((...))))....)))	chr2:10580580-10580945(-)$1	1	327	353	10.9121
.(((((((.(.(....)..).)))))	chr1:226107672-226107955(-)$1	1	181	207	10.2484
(.(..(.(((((....))))).).).	chr21:45945119-45945451(+)$1	1	110	136	10.2500
....(((.((((....)))).)))..	chr19:34890529-34890790(+)$1	1	81	107	13.3670
(((((((.((((...))))..)))))	chr4:174252954-174253173(-)$1	1	100	126	12.0170
((((((..((((....)))).)))))	chr13:92001101-92001392(+)$1	1	49	75	12.7812
(..(((.(((((....))))).))).	chr19:46701099-46701359(-)$1	1	105	131	10.3034
.((((...((((....))))...)))	chrX:70685604-70685883(+)$1	1	64	90	13.4657

#PSSM
c : 0.18	g : 0.16	e : 0.14	f : 0.10	= : 0.06	[ : 0.06	! : 0.06	h : 0.04	b : 0.04	d : 0.04	a : 0.02	$ : 0.02	i : 0.02	" : 0.02	+ : 0.02	# : 0.02	
g : 0.19	e : 0.16	c : 0.12	[ : 0.12	f : 0.08	= : 0.06	d : 0.06	h : 0.04	i : 0.04	b : 0.02	$ : 0.02	" : 0.02	+ : 0.02	# : 0.02	! : 0.02	
e : 0.19	g : 0.18	c : 0.10	d : 0.10	[ : 0.08	= : 0.08	f : 0.06	h : 0.04	i : 0.04	! : 0.04	" : 0.02	$ : 0.02	a : 0.02	# : 0.02	
e : 0.19	g : 0.18	d : 0.14	c : 0.10	= : 0.08	[ : 0.08	i : 0.08	! : 0.04	f : 0.04	" : 0.02	h : 0.02	# : 0.02	
g : 0.18	c : 0.16	e : 0.16	d : 0.12	= : 0.08	i : 0.08	[ : 0.06	b : 0.04	! : 0.04	f : 0.04	" : 0.02	# : 0.02	
c : 0.18	g : 0.18	e : 0.14	b : 0.08	d : 0.08	i : 0.08	" : 0.08	= : 0.06	a : 0.04	! : 0.04	# : 0.02	f : 0.02	
! : 0.23	c : 0.14	" : 0.12	e : 0.12	i : 0.08	[ : 0.06	= : 0.06	b : 0.06	g : 0.06	d : 0.04	# : 0.02	
[ : 0.27	! : 0.25	" : 0.12	e : 0.08	c : 0.06	= : 0.06	i : 0.06	g : 0.04	# : 0.02	b : 0.02	
d : 0.62	= : 0.06	[ : 0.06	i : 0.06	e : 0.06	" : 0.04	c : 0.04	! : 0.04	a : 0.02	
d : 0.64	c : 0.16	i : 0.06	e : 0.06	= : 0.04	[ : 0.02	a : 0.02	
d : 0.64	c : 0.14	e : 0.06	[ : 0.04	b : 0.04	i : 0.04	o : 0.02	= : 0.02	
d : 0.64	c : 0.12	e : 0.06	a : 0.04	o : 0.04	b : 0.04	i : 0.04	= : 0.02	
m : 0.78	l : 0.16	o : 0.04	d : 0.02	
m : 0.78	l : 0.18	o : 0.04	
m : 0.78	l : 0.18	o : 0.04	
m : 0.78	d : 0.12	o : 0.04	a : 0.02	l : 0.02	c : 0.02	
d : 0.64	c : 0.12	e : 0.06	= : 0.04	b : 0.04	i : 0.04	] : 0.02	o : 0.02	a : 0.02	
d : 0.64	c : 0.16	e : 0.06	= : 0.04	b : 0.04	i : 0.04	2 : 0.02	
d : 0.64	c : 0.14	e : 0.06	= : 0.04	] : 0.04	i : 0.04	2 : 0.04	
d : 0.52	2 : 0.10	] : 0.08	= : 0.06	i : 0.06	e : 0.06	c : 0.04	g : 0.02	3 : 0.02	4 : 0.02	a : 0.02	
] : 0.34	2 : 0.18	e : 0.10	3 : 0.08	i : 0.08	c : 0.06	= : 0.06	h : 0.02	d : 0.02	a : 0.02	g : 0.02	4 : 0.02	
g : 0.16	c : 0.14	2 : 0.12	e : 0.12	= : 0.08	3 : 0.08	i : 0.08	b : 0.06	d : 0.06	] : 0.04	h : 0.02	4 : 0.02	f : 0.02	
c : 0.18	g : 0.16	e : 0.14	b : 0.10	= : 0.08	d : 0.08	i : 0.08	3 : 0.06	a : 0.04	h : 0.02	2 : 0.02	4 : 0.02	f : 0.02	
g : 0.18	c : 0.14	d : 0.14	e : 0.14	= : 0.08	i : 0.08	2 : 0.06	] : 0.06	b : 0.04	f : 0.04	h : 0.02	4 : 0.02	
g : 0.18	e : 0.16	d : 0.12	= : 0.08	c : 0.08	] : 0.08	i : 0.08	2 : 0.06	f : 0.06	4 : 0.04	h : 0.02	C : 0.02	a : 0.02	
g : 0.19	e : 0.18	c : 0.10	f : 0.10	= : 0.08	d : 0.08	4 : 0.06	] : 0.06	i : 0.04	h : 0.02	C : 0.02	b : 0.02	: : 0.02	3 : 0.02	

#score	585.6571131520402
#seq	50
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_UTR_m2_run2.txt

#BEAR
ggggg[hhhhhhhh[bboooooobb22hhhhhhhh]ggg	chr19:5598705-5598997(-)$1	292	81	120	14.8317
ggggggg"""ggggggg[ammmmaggggggg4444gggg	chr12:57108069-57108325(-)$1	256	88	127	13.2955
========"""ccc[aooooooaccc=============	chr11:129991432-129991686(+)$1	254	15	54	18.2062
dddd[gggggggbbcccooooooccc]bb]ggggggg22	chr11:66384324-66384629(+)$1	305	48	87	14.2353
"""iiiiiiiiiddddbbnnnnnbb]dddd4444iiiii	chr17:48818917-48819144(+)$1	227	152	191	13.2147
deeeee[ccc[ccc[aooooooa]ccc]ccc]eeeee]d	chr6:132270305-132270546(-)$1	241	23	62	14.0611
[a[bbbb[gggggggbboooooobb]ggggggg]bb555	chr2:232577123-232577326(+)$1	203	10	49	13.9887
ggggggg[ccc[ggggggglllggggggg]cccgggggg	chr2:179982156-179982440(-)$1	284	183	222	12.0376
cc####bb!!gggggggooooooggggggg22bb333cc	chr9:100777599-100777868(+)$1	269	19	58	16.1440
ggggacccdddd"""bboooooobb22dddd]ccc4444	chr11:724677-724910(+)$1	233	98	137	16.7125
gg"""ccc!!gggggggooooooggggggg22ccc]ggg	chr14:34998463-34998742(-)$1	279	194	233	16.9127
[iiiiiiiii[bb"""bbnnnnnbb333bb]iiiiiiii	chr20:57242954-57243193(+)$1	239	99	138	14.5451
e[dddd"""dddd!!bboooooobb22dddd333dddde	chr5:179147304-179147518(+)$1	214	138	177	15.7812
:BBccc[ggggggg[bboooooobb333ggggggg22cc	chr17:73034885-73035239(-)$1	354	0	39	15.2261
fff"""cccdddd!!cccmmmmccc22dddd4444ccc4	chr2:188368376-188368597(-)$1	221	81	120	11.7074
g[cccbb[iiiiiiiiiooooooiiiiiiiii]bb7777	chr17:62498463-62498714(-)$1	251	32	71	13.6369
fff!!eeeeeccc!!bboooooobb22ccc22eeeee]f	chr11:129979225-129979450(+)$1	225	99	138	15.6799
c"""dddd"""ccc[bbnnnnnbb]ccc22dddd333cc	chr5:131923635-131923887(+)$1	252	77	116	11.9356
GGeeeee[a!!ffffffooooooffffff333a]eeeee	chr14:39565191-39565444(-)$1	253	129	168	13.2176
iiiiii!!ffffff[ccclllcccffffff4444iiiii	chr10:21823273-21823492(+)$1	219	15	54	12.7699
======"""eeeee!!aooooooa22eeeee88888888	chr1:150192884-150193167(-)$1	283	178	217	12.6306
cc[dddd!!bb[bb[aooooooa]bbbbdddd]cccddd	chr11:64536650-64536903(-)$1	253	161	200	12.3119
##a!!ccc"""ccc[bbmmmmbb]ccc22ccc22a4444	chr20:1435511-1435879(-)$1	368	203	242	12.3997
ii!!bb[==========oooooo==========]bb22i	chr12:46764996-46765252(-)$1	256	31	70	16.7795
bb[ccc!!ffffff[bboooooobb]ffffff]cccbb3	chr17:79803477-79803718(-)$1	241	125	164	15.4419
d!!ccc####bb!!==========ffffffiiiiiiiii	chr3:120394539-120394797(-)$1	258	12	51	11.5945
:ccc[ccc"""bbddddoooooodddd]bb]ccc]ccc:	chr8:124371716-124371962(-)$1	246	125	164	12.2428
c"""ggggggg[dddd[aooooooa]dddd]ggggggg2	chr5:179153580-179153859(+)$1	279	175	214	14.7266
gggggg[a!!cccddddmmmmdddd333ccc22a]gggg	chr2:242607463-242607717(+)$1	254	40	79	12.1704
:eeeee[cccgggggggooooooggggggg]ccc]eeee	chr7:22349509-22349811(-)$1	302	169	208	13.7222
c!!ggggggg"""ddddrrrrrrrrrddddggggggg]c	chr8:117656989-117657323(-)$1	334	8	47	11.0129
ffffffcccffffffbboooooobb22ffffff22cccf	chr5:138264836-138265122(+)$1	286	190	229	13.9551
!bb####bb!!ffffffooooooffffffbb22bb22ee	chr1:92200254-92200606(-)$1	352	197	236	13.4355
:ccc"""eeeee!!cccooooooccc22eeeee333ccc	chr1:28564263-28564577(+)$1	314	191	230	14.4897
eee"""bb[ccc"""bboooooobb333ccc]bb22eee	chr16:22308640-22308901(+)$1	261	43	82	16.6940
c[bb[ccc[ccc[a[bboooooobb22a]cccccc]bb]	chrX:20284758-20284990(-)$1	232	152	191	16.6812
eeedddd"""ccc!!cccooooooccc]ccc333dddd9	chr1:1325507-1325745(-)$1	238	140	179	14.1774
[bb[ccc[dddd"""bboooooobb]dddd]ccc]bb22	chr9:37588634-37589030(-)$1	396	188	227	15.3117
f::==============oooooo==============dd	chr8:124381200-124381489(-)$1	289	24	63	15.9720
ddggggggg!!ffffffooooooffffff22ggggggg5	chr9:6984077-6984442(+)$1	365	3	42	14.1448
iiii"""a!!cccxxxxxxxxxxxxxxxccc22aiiiii	chr1:8073675-8073999(-)$1	324	277	316	10.8293
gggg"""bb!!ffffffooooooffffff22bbgggggg	chr2:63053120-63053332(+)$1	212	86	125	14.3850
=========ccc[a[bboooooobb]a]ccc]=======	chr2:62991339-62991579(+)$1	240	47	86	19.7017
e[iiiiiiiiibbssssssssssbb]iiiiiiiii333e	chr2:62998413-62998628(+)$1	215	96	135	11.8454
ii[dddd!!ccc[a[bboooooobb]a]ccc22ddddii	chr2:188378242-188378475(-)$1	233	50	89	16.9376
"bb[============[bbmmmmbb]============b	chr9:123292267-123292519(-)$1	252	170	209	13.4857
cc333eeeeegggggggooooooggggggggggggggad	chr16:2806233-2806510(+)$1	277	77	116	13.9352
iiiiiiiii[a[bb[bbmmmmbb]bba]iiiiiiiii33	chr11:118888060-118888293(-)$1	233	20	59	13.0582
iii####bb####ddddnnnnndddd333bb]iiiiiii	chr3:156870721-156870960(-)$1	239	90	129	11.6262
=========ccc[a[bboooooobb]a]ccc]=======	chr2:62991300-62991513(+)$1	213	86	125	19.7017
cbb[ccc[dddd[ccc[aooooooa]cccdddd]cccbb	chr9:117044658-117044918(+)$1	260	88	127	13.3010
cc"""a!!eeeee"""aooooooa333eeeee22a333c	chr1:46125766-46126097(-)$1	331	24	63	16.7536
==========bb$$$$$ccclllccc22bb]========	chr3:160135459-160135767(+)$1	308	195	234	12.5670

#otherMatches

#Seq PSSM
UUGUUGUGUUUUUUCCUGAAGGAAGCAGAGGAAUGGAGC	chr19:5598705-5598997(-)$1	292	81	120	14.8317
UUUUAUCUUCUUAGCUGGCGGCAGCAGCUGAAAUUGAUG	chr12:57108069-57108325(-)$1	256	88	127	13.2955
AGUGUAUUUGACCACGUUUACUCUGGAGUAUGUUCUGAU	chr11:129991432-129991686(+)$1	254	15	54	18.2062
GGCCGGGGCGCGCGCUCGUGGUGGAGAUGUCGCGCCCAA	chr11:66384324-66384629(+)$1	305	48	87	14.2353
AAAUUGAUGUACUUCUGCAACAGGUGAGAAUUGUGUGCA	chr17:48818917-48819144(+)$1	227	152	191	13.2147
GAGGUCAUGAAGAAGAACAUGAUGUUCAUCAAGACCUGU	chr6:132270305-132270546(-)$1	241	23	62	14.0611
GGCCUUUGAUUCUCUCCAGGUGAGGAAGAGGAUGGAGAU	chr2:232577123-232577326(+)$1	203	10	49	13.9887
UAAGGAGCAGUCAGCUACAUUAUGUAGUUAACUUUUCUU	chr2:179982156-179982440(-)$1	284	183	222	12.0376
CUAAAGUCAAUUUUUGUUACUGUACagaggaggaagaag	chr9:100777599-100777868(+)$1	269	19	58	16.1440
UUCACAGCCCGAAAUGCCAACGAGCUAUCGGUGCUCAAG	chr11:724677-724910(+)$1	233	98	137	16.7125
UAAUAUUUAGAAUCUUUAGAAAAAAAGAUUGAAAGAUGA	chr14:34998463-34998742(-)$1	279	194	233	16.9127
UGUUGGCCGGAUUAAGCAGAAGAUGAAAGAAUUGGCCAG	chr20:57242954-57243193(+)$1	239	99	138	14.5451
UUGCCAACCCUAGAUGUGAGUCAGCUCCUGGAUGUGGUG	chr5:179147304-179147518(+)$1	214	138	177	15.7812
ACCUGGUGGCAGGAACCUGCCUUGGAUAUUCUGCUUUCC	chr17:73034885-73035239(-)$1	354	0	39	15.2261
UAUGGGUUCUGUAUUUCAGAGAUGAUUUACACAAUGAAG	chr2:188368376-188368597(-)$1	221	81	120	11.7074
CUCUCCUAUUAUUAGACUUAUUCGUCUAAUGGAAGAGAU	chr17:62498463-62498714(-)$1	251	32	71	13.6369
CUCUUGCAGCCAAUGCCGGAACAGGAUUUGCUGUUGCUG	chr11:129979225-129979450(+)$1	225	99	138	15.6799
AACUGGAAAAACUAAAUAAAGAAUCUAGGCUUCUCAAUC	chr5:131923635-131923887(+)$1	252	77	116	11.9356
CCUAUUUGGAAUUCAUUCAACAAAAUGAAGAACGAGAUG	chr14:39565191-39565444(-)$1	253	129	168	13.2176
UCUCCGGGCGCCCGCGUUAGCGGCCGGGUGGAGGUGGGG	chr10:21823273-21823492(+)$1	219	15	54	12.7699
AUUCUAAGACCAGAUUCUCUAAUGUUUCUGGGUGUGCAA	chr1:150192884-150193167(-)$1	283	178	217	12.6306
UCGGGAGUUGGCUCGCUUAAAUGGGACCCUUCGGGAAGA	chr11:64536650-64536903(-)$1	253	161	200	12.3119
AAGAGCAUGGAGCUGUAGCUGUGGAGCGAGUGACCAAGA	chr20:1435511-1435879(-)$1	368	203	242	12.3997
GUCACGUGACCGCGGCGGGCUGGCGCUGCGGUCCUGACG	chr12:46764996-46765252(-)$1	256	31	70	16.7795
ACAGUUGGCUCCCAUUUGGGAUAAACUGGGAGAGACGUA	chr17:79803477-79803718(-)$1	241	125	164	15.4419
UUAGUAAACUGCCAAUUUUCUGAAAUGCUCUUUAAAUCC	chr3:120394539-120394797(-)$1	258	12	51	11.5945
CCAAUGCAACUAGAUUCUUCAGUGAGUACUCUGUUUUGA	chr8:124371716-124371962(-)$1	246	125	164	12.2428
CAGAGGUAAAGGAAAGGGGUCACACAUUUUGUUUUACCA	chr5:179153580-179153859(+)$1	279	175	214	14.7266
GGGGACCGUCUGCUCCCACCUGGGACCUGUGCUCAGUCC	chr2:242607463-242607717(+)$1	254	40	79	12.1704
UCUAUGGCCAUAGGAGUCUGGCAACUCCUACUGGACAUG	chr7:22349509-22349811(-)$1	302	169	208	13.7222
UCAAGGAGUUCACUGCCCAAAACUUAGGCAAGCUCUUCA	chr8:117656989-117657323(-)$1	334	8	47	11.0129
AGCUGGCCAGAGUGCCCGGGUAAGGAAGCGCUCCGUGGG	chr5:138264836-138265122(+)$1	286	190	229	13.9551
CCGAAAAGAGUAUGGAGCAGUUACUUCAUUCACCGAACU	chr1:92200254-92200606(-)$1	352	197	236	13.4355
AGCAGAAGAUCAAAAUGCUAAAACAUGAUGAUUAAGUGC	chr1:28564263-28564577(+)$1	314	191	230	14.4897
GGCAUUGUGGGUAAGAGGAAACGCUGGGGCCGGCCCGCU	chr16:22308640-22308901(+)$1	261	43	82	16.6940
cgUGGGGCUCgggcggcgacggagcggggccggccgugg	chrX:20284758-20284990(-)$1	232	152	191	16.6812
GUCUGUUAGAGUGCAGGAAUCCACUCCCCACAAAGGCAA	chr1:1325507-1325745(-)$1	238	140	179	14.1774
GACUCCUCUCUGCAAGUGAAUAGGCCCAGAAAGGUGUAA	chr9:37588634-37589030(-)$1	396	188	227	15.3117
GCCauauauauauauauauacaaauauauauauauauUU	chr8:124381200-124381489(-)$1	289	24	63	15.9720
AAGUGAAAAUGACAUUUAUAUUGGGAUGUGUUUUUCAUA	chr9:6984077-6984442(+)$1	365	3	42	14.1448
GAAGACAGGCCUCCCAAAGUACCGCCAAGAGAACCUUUG	chr1:8073675-8073999(-)$1	324	277	316	10.8293
UCUUUAAUCUUCCAGGAAUCCCCUUCUGGUCGAAGGAAA	chr2:63053120-63053332(+)$1	212	86	125	14.3850
UUUUAUUCUGGUAGGCACAUAGCUGGCAACCUGGAAUAA	chr2:62991339-62991579(+)$1	240	47	86	19.7017
ACAUUUGUCAUAGAAAAUGUAAGCUAAUGGCAAAUUCCU	chr2:62998413-62998628(+)$1	215	96	135	11.8454
gguggugcuuucuugacuugggugugaugaauccauccc	chr2:188378242-188378475(-)$1	233	50	89	16.9376
AUCUCAGAUGGCAUGUCCUGAUGAGAAUGUGUCAUCUGG	chr9:123292267-123292519(-)$1	252	170	209	13.4857
CCGUGUCUCCCCGCUCCCCCUCAGGAGCGGUGGUGCCCC	chr16:2806233-2806510(+)$1	277	77	116	13.9352
UUUUGUUUUGGUGAGCAGAAGUGGUCCAAAGGCAAAGUU	chr11:118888060-118888293(-)$1	233	20	59	13.0582
GCUAAAGGAGUUGGGAUUUUGUGUUCAUGUCAAGCAUCC	chr3:156870721-156870960(-)$1	239	90	129	11.6262
UUUUAUUCUGGUAGGCACAUAGCUGGCAACCUGGAAUAA	chr2:62991300-62991513(+)$1	213	86	125	19.7017
GCUAUCAAGGACAGCUGGGUGAGAUGGGCGUCCCUGGAG	chr9:117044658-117044918(+)$1	260	88	127	13.3010
UUUCCCCUUUUGGAAACGUGUCAGGAACCAAAUAGUUUA	chr1:46125766-46126097(-)$1	331	24	63	16.7536
AUUGCAGCUUCUGAGACUCUCAAAGAAAGGAAAGCUGCA	chr3:160135459-160135767(+)$1	308	195	234	12.5670

#DB
(((((.((((((((.((......))..)))))))).)))	chr19:5598705-5598997(-)$1	1	81	120	14.8317
(((((((...(((((((.(....))))))))....))))	chr12:57108069-57108325(-)$1	1	88	127	13.2955
((((((((...(((.(......)))))))))))))))))	chr11:129991432-129991686(+)$1	1	15	54	18.2062
((((.((((((((((((......))).)).)))))))..	chr11:66384324-66384629(+)$1	1	48	87	14.2353
...(((((((((((((((.....)).))))....)))))	chr17:48818917-48819144(+)$1	1	152	191	13.2147
((((((.(((.(((.(......).))).))).))))).)	chr6:132270305-132270546(-)$1	1	23	62	14.0611
.(.((((.(((((((((......)).))))))).))...	chr2:232577123-232577326(+)$1	1	10	49	13.9887
(((((((.(((.(((((((...))))))).)))))))))	chr2:179982156-179982440(-)$1	1	183	222	12.0376
((....((..(((((((......)))))))..))...))	chr9:100777599-100777868(+)$1	1	19	58	16.1440
((((((((((((...((......))..)))).)))....	chr11:724677-724910(+)$1	1	98	137	16.7125
((...(((..(((((((......)))))))..))).)))	chr14:34998463-34998742(-)$1	1	194	233	16.9127
.(((((((((.((...((.....))...)).))))))))	chr20:57242954-57243193(+)$1	1	99	138	14.5451
(.((((...((((..((......))..))))...)))))	chr5:179147304-179147518(+)$1	1	138	177	15.7812
.(((((.(((((((.((......))...)))))))..))	chr17:73034885-73035239(-)$1	1	0	39	15.2261
(((...(((((((..(((....)))..))))....))).	chr2:188368376-188368597(-)$1	1	81	120	11.7074
(.(((((.(((((((((......))))))))).))....	chr17:62498463-62498714(-)$1	1	32	71	13.6369
(((..((((((((..((......))..)))..))))).)	chr11:129979225-129979450(+)$1	1	99	138	15.6799
(...((((...(((.((.....)).)))..))))...))	chr5:131923635-131923887(+)$1	1	77	116	11.9356
(((((((.(..((((((......))))))...).)))))	chr14:39565191-39565444(-)$1	1	129	168	13.2176
((((((..((((((.(((...)))))))))....)))))	chr10:21823273-21823492(+)$1	1	15	54	12.7699
((((((...(((((..(......)..)))))........	chr1:150192884-150193167(-)$1	1	178	217	12.6306
((.((((..((.((.(......).)))))))).)))(((	chr11:64536650-64536903(-)$1	1	161	200	12.3119
..(..(((...(((.((....)).)))..)))..)....	chr20:1435511-1435879(-)$1	1	203	242	12.3997
((..((.((((((((((......)))))))))).))..)	chr12:46764996-46765252(-)$1	1	31	70	16.7795
((.(((..((((((.((......)).)))))).))))).	chr17:79803477-79803718(-)$1	1	125	164	15.4419
(..(((....((..(((((((((((((((((((((((((	chr3:120394539-120394797(-)$1	1	12	51	11.5945
.(((.(((...((((((......)))).)).))).))).	chr8:124371716-124371962(-)$1	1	125	164	12.2428
(...(((((((.((((.(......).)))).))))))).	chr5:179153580-179153859(+)$1	1	175	214	14.7266
((((((.(..(((((((....))))...)))..).))))	chr2:242607463-242607717(+)$1	1	40	79	12.1704
.(((((.((((((((((......))))))).))).))))	chr7:22349509-22349811(-)$1	1	169	208	13.7222
(..(((((((...((((.........))))))))))).)	chr8:117656989-117657323(-)$1	1	8	47	11.0129
))))))(((((((((((......))..))))))..)))(	chr5:138264836-138265122(+)$1	1	190	229	13.9551
.((....((..((((((......))))))))..))..))	chr1:92200254-92200606(-)$1	1	197	236	13.4355
.(((...(((((..(((......)))..)))))...)))	chr1:28564263-28564577(+)$1	1	191	230	14.4897
(((...((.(((...((......))...))).))..)))	chr16:22308640-22308901(+)$1	1	43	82	16.6940
(.((.(((.(((.(.((......))..).)))))).)).	chrX:20284758-20284990(-)$1	1	152	191	16.6812
(((((((...(((..(((......))).)))...)))).	chr1:1325507-1325745(-)$1	1	140	179	14.1774
.((.(((.((((...((......)).)))).))).))..	chr9:37588634-37589030(-)$1	1	188	227	15.3117
)..((((((((((((((......))))))))))))))((	chr8:124381200-124381489(-)$1	1	24	63	15.9720
(((((((((..((((((......))))))..))))))).	chr9:6984077-6984442(+)$1	1	3	42	14.1448
((((...(..(((...............)))..))))))	chr1:8073675-8073999(-)$1	1	277	316	10.8293
((((...((..((((((......))))))..))))))))	chr2:63053120-63053332(+)$1	1	86	125	14.3850
((((((((((((.(.((......)).).))).)))))))	chr2:62991339-62991579(+)$1	1	47	86	19.7017
(.(((((((((((..........)).)))))))))...)	chr2:62998413-62998628(+)$1	1	96	135	11.8454
((.((((..(((.(.((......)).).)))..))))))	chr2:188378242-188378475(-)$1	1	50	89	16.9376
.((.((((((((((((.((....)).)))))))))))))	chr9:123292267-123292519(-)$1	1	170	209	13.4857
))...)))))(((((((......)))))))(((((((((	chr16:2806233-2806510(+)$1	1	77	116	13.9352
(((((((((.(.((.((....)).))).)))))))))..	chr11:118888060-118888293(-)$1	1	20	59	13.0582
(((....((....((((.....))))...)).)))))))	chr3:156870721-156870960(-)$1	1	90	129	11.6262
((((((((((((.(.((......)).).))).)))))))	chr2:62991300-62991513(+)$1	1	86	125	19.7017
(((.(((.((((.(((.(......).))))))).)))))	chr9:117044658-117044918(+)$1	1	88	127	13.3010
((...(..(((((...(......)...)))))..)...)	chr1:46125766-46126097(-)$1	1	24	63	16.7536
((((((((((((.....(((...)))..)).))))))))	chr3:160135459-160135767(+)$1	1	195	234	12.5670

#PSSM
c : 0.16	g : 0.15	i : 0.11	= : 0.09	d : 0.07	e : 0.07	: : 0.07	f : 0.07	[ : 0.05	" : 0.03	G : 0.01	# : 0.01	b : 0.01	! : 0.01	
g : 0.13	i : 0.13	c : 0.11	= : 0.09	b : 0.09	e : 0.07	[ : 0.07	" : 0.05	f : 0.05	d : 0.03	! : 0.03	a : 0.01	B : 0.01	G : 0.01	# : 0.01	: : 0.01	
g : 0.13	i : 0.11	= : 0.09	" : 0.09	e : 0.09	b : 0.09	[ : 0.07	f : 0.05	c : 0.05	! : 0.05	d : 0.03	# : 0.01	B : 0.01	a : 0.01	: : 0.01	3 : 0.01	
g : 0.15	= : 0.11	i : 0.11	" : 0.11	c : 0.11	d : 0.09	e : 0.05	# : 0.05	! : 0.05	[ : 0.05	b : 0.03	f : 0.01	3 : 0.01	
g : 0.13	= : 0.13	" : 0.13	c : 0.11	i : 0.09	d : 0.09	[ : 0.05	e : 0.05	# : 0.05	b : 0.03	! : 0.03	a : 0.01	f : 0.01	3 : 0.01	
c : 0.18	g : 0.13	= : 0.13	i : 0.09	e : 0.09	d : 0.09	" : 0.09	b : 0.05	# : 0.05	[ : 0.01	f : 0.01	a : 0.01	
c : 0.16	g : 0.11	= : 0.11	[ : 0.09	" : 0.09	i : 0.07	b : 0.07	d : 0.07	e : 0.05	! : 0.05	# : 0.05	h : 0.01	
c : 0.16	= : 0.13	[ : 0.11	g : 0.09	b : 0.09	! : 0.09	" : 0.07	i : 0.07	e : 0.05	a : 0.03	h : 0.01	d : 0.01	# : 0.01	
" : 0.15	g : 0.11	! : 0.11	= : 0.11	i : 0.09	c : 0.09	e : 0.07	d : 0.05	b : 0.05	f : 0.03	[ : 0.03	h : 0.01	a : 0.01	# : 0.01	
c : 0.15	! : 0.15	" : 0.11	g : 0.09	d : 0.09	e : 0.09	i : 0.07	= : 0.07	f : 0.05	# : 0.03	h : 0.01	b : 0.01	[ : 0.01	
c : 0.18	g : 0.16	" : 0.09	d : 0.09	! : 0.07	i : 0.05	f : 0.05	e : 0.05	b : 0.05	= : 0.05	[ : 0.03	h : 0.01	a : 0.01	# : 0.01	
c : 0.24	g : 0.15	f : 0.13	d : 0.09	b : 0.09	[ : 0.07	e : 0.05	= : 0.05	i : 0.03	h : 0.01	" : 0.01	# : 0.01	
g : 0.15	c : 0.15	f : 0.13	b : 0.11	[ : 0.09	d : 0.07	" : 0.07	= : 0.05	e : 0.03	! : 0.03	h : 0.01	i : 0.01	# : 0.01	$ : 0.01	
g : 0.15	f : 0.13	d : 0.11	! : 0.11	c : 0.09	" : 0.09	a : 0.07	b : 0.05	= : 0.05	h : 0.01	i : 0.01	e : 0.01	x : 0.01	s : 0.01	$ : 0.01	
[ : 0.26	g : 0.13	d : 0.11	" : 0.09	! : 0.09	f : 0.09	= : 0.07	c : 0.05	i : 0.01	x : 0.01	s : 0.01	$ : 0.01	
b : 0.32	g : 0.11	c : 0.11	d : 0.11	f : 0.07	= : 0.07	a : 0.05	" : 0.03	i : 0.01	! : 0.01	x : 0.01	s : 0.01	$ : 0.01	
b : 0.35	g : 0.11	c : 0.09	f : 0.07	d : 0.07	o : 0.05	= : 0.05	[ : 0.05	a : 0.03	i : 0.01	x : 0.01	s : 0.01	$ : 0.01	
o : 0.62	c : 0.07	b : 0.05	m : 0.05	n : 0.03	a : 0.03	[ : 0.01	g : 0.01	= : 0.01	r : 0.01	x : 0.01	s : 0.01	
o : 0.67	n : 0.07	m : 0.07	a : 0.01	g : 0.01	l : 0.01	= : 0.01	r : 0.01	x : 0.01	s : 0.01	b : 0.01	c : 0.01	
o : 0.67	m : 0.11	n : 0.07	l : 0.03	= : 0.01	r : 0.01	x : 0.01	s : 0.01	c : 0.01	
o : 0.67	m : 0.11	n : 0.07	l : 0.05	= : 0.01	r : 0.01	x : 0.01	s : 0.01	
o : 0.67	n : 0.07	m : 0.05	l : 0.03	b : 0.03	c : 0.01	= : 0.01	d : 0.01	r : 0.01	x : 0.01	s : 0.01	
o : 0.62	a : 0.05	b : 0.05	m : 0.03	n : 0.03	c : 0.03	d : 0.03	g : 0.01	= : 0.01	r : 0.01	x : 0.01	s : 0.01	l : 0.01	
b : 0.35	c : 0.11	g : 0.09	] : 0.07	f : 0.07	a : 0.05	= : 0.05	d : 0.05	o : 0.05	i : 0.01	r : 0.01	x : 0.01	
b : 0.37	c : 0.15	g : 0.11	f : 0.11	d : 0.05	= : 0.03	a : 0.03	i : 0.01	] : 0.01	2 : 0.01	r : 0.01	x : 0.01	3 : 0.01	
] : 0.20	2 : 0.15	c : 0.15	g : 0.11	f : 0.11	3 : 0.09	b : 0.03	= : 0.03	d : 0.03	i : 0.01	r : 0.01	x : 0.01	
2 : 0.16	g : 0.13	f : 0.13	3 : 0.11	d : 0.09	c : 0.09	= : 0.07	a : 0.07	i : 0.03	] : 0.01	e : 0.01	b : 0.01	x : 0.01	
f : 0.15	g : 0.13	d : 0.13	] : 0.13	3 : 0.09	= : 0.07	c : 0.05	2 : 0.05	b : 0.03	i : 0.03	e : 0.03	h : 0.01	a : 0.01	x : 0.01	
c : 0.18	g : 0.15	d : 0.15	f : 0.15	= : 0.07	b : 0.07	i : 0.05	e : 0.05	2 : 0.03	h : 0.01	] : 0.01	3 : 0.01	
c : 0.20	d : 0.16	g : 0.13	b : 0.09	= : 0.07	f : 0.07	i : 0.05	2 : 0.05	e : 0.05	] : 0.03	h : 0.01	3 : 0.01	
c : 0.20	g : 0.11	d : 0.11	] : 0.11	2 : 0.09	= : 0.07	i : 0.07	e : 0.05	4 : 0.03	f : 0.03	b : 0.03	h : 0.01	3 : 0.01	
g : 0.13	2 : 0.13	] : 0.11	c : 0.11	= : 0.09	i : 0.09	4 : 0.07	3 : 0.05	d : 0.05	f : 0.03	e : 0.03	h : 0.01	8 : 0.01	b : 0.01	
= : 0.13	g : 0.13	c : 0.13	2 : 0.11	i : 0.09	4 : 0.07	e : 0.05	b : 0.05	] : 0.05	3 : 0.03	d : 0.03	h : 0.01	a : 0.01	8 : 0.01	f : 0.01	
g : 0.15	c : 0.15	= : 0.11	i : 0.09	4 : 0.07	] : 0.07	b : 0.07	3 : 0.05	2 : 0.05	e : 0.03	d : 0.03	a : 0.03	h : 0.01	8 : 0.01	
g : 0.15	i : 0.15	= : 0.11	c : 0.11	b : 0.07	] : 0.07	e : 0.05	3 : 0.05	d : 0.05	4 : 0.03	a : 0.03	2 : 0.03	h : 0.01	8 : 0.01	
g : 0.16	i : 0.13	= : 0.11	c : 0.11	3 : 0.09	e : 0.07	] : 0.05	b : 0.05	d : 0.05	2 : 0.05	4 : 0.03	7 : 0.01	8 : 0.01	
g : 0.20	i : 0.13	= : 0.11	e : 0.09	c : 0.09	3 : 0.07	d : 0.07	2 : 0.05	b : 0.05	4 : 0.03	5 : 0.01	7 : 0.01	8 : 0.01	
g : 0.15	i : 0.13	c : 0.13	= : 0.09	d : 0.07	e : 0.07	2 : 0.05	] : 0.05	b : 0.05	3 : 0.05	4 : 0.03	5 : 0.01	7 : 0.01	8 : 0.01	a : 0.01	
i : 0.15	g : 0.11	c : 0.11	e : 0.11	= : 0.07	d : 0.07	2 : 0.05	4 : 0.05	5 : 0.03	f : 0.03	3 : 0.03	b : 0.03	7 : 0.01	8 : 0.01	: : 0.01	] : 0.01	9 : 0.01	

#score	756.1642602466943
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_UTR_m1_run2.txt

#BEAR
fffeeeee[eeeeecccmmmmccc333eeeee]eeeee:	chr2:208633886-208634134(-)$1	248	52	91	11.1929
==[bbbbeeeee####ccclllccc333eeeee]bb]bb	chr17:48629360-48629630(+)$1	270	24	63	9.7543
iiiiiii!!bb[ddddoooooodddd]bb]iiiiiiiii	chr14:35747709-35748024(+)$1	315	200	239	13.0710
bb[hhhhhhhha[bboooooobb]a22hhhhhhhh]bb]	chr6:127587957-127588278(+)$1	321	270	309	9.8385
eeeeeggggggg[ddddmmmmddddggggggg333eeee	chr21:16436954-16437212(-)$1	258	204	243	12.6624
dddd####ccc[cccbboooooobb22ccc]ccc333dd	chr20:32247183-32247462(-)$1	279	229	268	12.7367
ffffffbb[eeeee[abblllbb]a]eeeee]bb4444f	chr16:22337033-22337349(+)$1	316	235	274	10.2332
eeee[ddddccc[ddddoooooodddd]ccc]dddd]ee	chr9:117050880-117051123(+)$1	243	30	69	10.6920
ddd!!eeeeeccc[cccmmmmccc]ccc]eeeee22ddd	chr17:8378189-8378496(+)$1	307	193	232	11.2977
[ddddffffff[addddmmmmdddd]a]ffffff333dd	chr2:128180564-128180784(+)$1	220	75	114	11.6168
[ccc!!dddd[ddddoooooodddd22dddd22ccc333	chr3:48445743-48445997(-)$1	254	114	153	12.2577
ccc"""ggggggg[aooooooa]ggggggg333ccc]ff	chr8:124408489-124408772(-)$1	283	57	96	13.5533
dddd[a"""ddddbbccclllccc333bb]dddd333a]	chr7:77166718-77166990(+)$1	272	146	185	12.4483
cc[eeeee[ccceeeeellleeeee]ccc]eeeee22cc	chr17:40269709-40269932(-)$1	223	179	218	10.3159
g!!cccbb$$$$$ddddmmmmdddd4444bb]ccc4444	chr14:24034691-24034939(-)$1	248	59	98	11.6209
=============[ccclllccc]=============::	chr5:78373202-78373526(+)$1	324	122	161	13.3211
gggggg"""ccc!!cccmmmmccc22ccc]gggggggdd	chr20:35491740-35492042(-)$1	302	49	88	14.3170
[eeeee[bbbb[a!!bbmmmmbb22a]bb333bbeeeee	chr6:126307679-126308015(+)$1	336	251	290	11.0905
"iiiiiiiii[bb[cccmmmmccc]bbiiiiiiiiibb]	chr19:19105847-19106166(-)$1	319	232	271	12.7355
[ddddffffff[addddmmmmdddd]a]ffffff333dd	chr2:128180520-128180764(+)$1	244	119	158	11.6168
$ccc"""ccc[eeeeennnnneeeee]ccc22ccc4444	chr1:28832455-28832699(+)$1	244	85	124	10.7298
:bb!!ccc[cccbbcccmmmmccc333bb]ccc]ccc22	chr17:80190050-80190278(+)$1	228	77	116	11.5011
%ggggggg####bbbbnnnnnbb]bb333ggggggga]a	chr17:78599411-78599694(+)$1	283	120	159	11.2570
b[ccc[===========mmmm===========]ccc]bb	chr9:117052990-117053200(+)$1	210	77	116	14.0115
ddd==========[ddddllldddd]==========FFF	chr12:26985932-26986192(-)$1	260	202	241	12.7552
a"""cccbb[bb[ddddmmmmdddd]bb]bb]ccc333a	chr6:30294315-30294597(-)$1	282	137	176	11.5897
c!!ccc[bb!!ddddoooooodddd22bb]ccc22ccc:	chr3:184103733-184103936(+)$1	203	36	75	11.7202
ffffff[bb[ccc!!bboooooobb22cccbbffffff]	chr9:116999160-116999402(+)$1	242	134	173	10.8621
[dddd[ggggggg[aooooooa]gggggggddddggggg	chr6:32939492-32939729(+)$1	237	106	145	12.6058
ggggg!!ccc[bb!!bbmmmmbb22bb]ccc333ggggg	chr15:42129578-42129861(+)$1	283	79	118	12.5760
fffccc!!eeeee[bbnnnnnbb]eeeee]ccc]fffff	chr2:232576587-232576794(+)$1	207	89	128	10.9931
============"""bbnnnnnbb22============2	chr17:34856573-34856893(-)$1	320	54	93	14.1754
e####eeeee[ccc[bboooooobb]ccceeeee22eee	chr2:61405877-61406193(+)$1	316	232	271	10.7116
====dddd!!ccc[bbnnnnnbb]ccc22dddd]=====	chr17:63525938-63526230(-)$1	292	108	147	11.3157
e[ddddffffff"""bbmmmmbb333ffffff]dddd]e	chr16:75298138-75298376(-)$1	238	44	83	10.9975
hhhhcccbb!!ddddbbmmmmbb]dddd]bb333ccc]h	chr2:27593044-27593302(-)$1	258	18	57	10.3320
b[ccc[===========mmmm===========]ccc]bb	chr9:117053000-117053242(+)$1	242	67	106	14.0115
dd[ccc!!ccc[cccooooooccc]ccc]cccdddd]bb	chr4:124319265-124319549(+)$1	284	101	140	12.4421
======"""gggggggooooooggggggg]=========	chr2:39570422-39570694(-)$1	272	181	220	14.3438
eeee!!eeeee[ddddnnnnndddd22eeeee4444eee	chr16:457353-457644(+)$1	291	23	62	11.4711
$$$dddd!!a####cccmmmmccc333a22dddd=====	chr14:24034223-24034442(-)$1	219	72	111	12.8088
ffffff[dddd[a[bbnnnnnbb]a22dddd]ffffff2	chr18:55711818-55712041(+)$1	223	161	200	10.6335
eeee[bb[==========lll==========bbeeeee2	chr9:117031420-117031672(+)$1	252	144	183	12.4136
eee[bb"""dddd!!bblllbb22dddd333bb]eeeee	chr16:841221-841474(+)$1	253	209	248	9.8204
c"""ccc[eeeee!!bbmmmmbb22eeeee]ccc333cc	chr5:176980112-176980428(-)$1	316	109	148	12.4983
ggggggg"""bb[ddddlllddddbb333ggggggg]gg	chr16:89350981-89351318(-)$1	337	203	242	12.5383
!eeeee"""bb[eeeeellleeeee333bb333eeeee2	chr14:21463233-21463495(+)$1	262	140	179	10.9536
iiiiiiii####cccooooooccc333iiiiiiiii]dd	chr14:70238176-70238445(+)$1	269	173	212	15.1253
[dddd[ggggggg[aooooooa]gggggggddddggggg	chr6:32939471-32939692(+)$1	221	127	166	12.6058
dd!!bbggggggg[cccmmmmccc]ggggggg]bb333d	chr6:167412764-167413112(+)$1	348	252	291	12.9757
fffccc!!eeeee[bbnnnnnbb]eeeee]ccc]fffff	chr2:232576581-232576787(+)$1	206	95	134	10.9931
gggg[bb[eeeeeddddmmmmdddd22eeeee22bb]gg	chr4:1229637-1229942(-)$1	305	16	55	11.5012
'''''ggggggg!!aooooooa22ggggggg333eeeee	chr12:104697593-104697964(+)$1	371	109	148	10.1622
ee[iiiiiiiii!!abbmmmmbb]a22iiiiiiiii]ee	chr17:47005906-47006180(+)$1	274	167	206	15.1635
dd[ggggggg[bb[ddddllldddd22bb]gggggggdd	chr16:89346553-89346829(-)$1	276	218	257	12.5798
ggggccc[ccc[cccccclllccc22ccc]cccccc]gg	chr2:54197728-54198041(-)$1	313	153	192	13.5760
FFFFFF:ccc[a!!cccmmmmccc333a]cccggggggg	chr16:24802721-24802990(+)$1	269	119	158	10.5999
b!!ggggggg[a[ddddnnnnndddd]a]ggggggg22b	chr2:71357672-71357977(+)$1	305	236	275	11.9220

#otherMatches

#Seq PSSM
CGGCUCUGAGUCGCGCUUCUCAGCGGAGUGACCCAGGGA	chr2:208633886-208634134(-)$1	248	52	91	11.1929
CUGGACCUGUAUGAGGCCUCACAGGAGAGUGCGUGGCUC	chr17:48629360-48629630(+)$1	270	24	63	9.7543
CAGGUCUUCGGAGAGGUAAGUCCCUCACUCAGACUUGUU	chr14:35747709-35748024(+)$1	315	200	239	13.0710
GGGUCAGGGGCCGGUACGUAGAUGGACGCCCUUGGGCUG	chr6:127587957-127588278(+)$1	321	270	309	9.8385
CGGCCCGGGAGCGCGGCCCGCGUCGGCUCUCGCUUGGCU	chr21:16436954-16437212(-)$1	258	204	243	12.6624
GGGCCGGUUGCCCACCAACCCUCUGCAGUGCGCAUGUGC	chr20:32247183-32247462(-)$1	279	229	268	12.7367
ggaggcggaggaggagCCCAUGGACACUUCCCCCAGCGG	chr16:22337033-22337349(+)$1	316	235	274	10.2332
GCCAACAGGGCCCAGGGCUGGCAUCCUUGGCACCUGGUG	chr9:117050880-117051123(+)$1	243	30	69	10.6920
UGGCUGCCACCUGGGGCCUCAGCUGCAGUGUGGCCACUA	chr17:8378189-8378496(+)$1	307	193	232	11.2977
AGCACCCGUGCGCCAGCCUGUGCUGCGGGCACGGCACGU	chr2:128180564-128180784(+)$1	220	75	114	11.6168
AGCCACGGCCUGCUGUUGCUUCAGCCUGGCCUGGGCAGC	chr3:48445743-48445997(-)$1	254	114	153	12.2577
CGGCCGCUGGCGCGGAGCUUGUGGCGCCAGAAUUCGGAG	chr8:124408489-124408772(-)$1	283	57	96	13.5533
UGGAGCAAGUGGAGAUCCUGAGGAAAUUCAUCCAGAGGG	chr7:77166718-77166990(+)$1	272	146	185	12.4483
GCUGGUCAAUGAGGUCAUGCUGACCAUCACUGACCCUGC	chr17:40269709-40269932(-)$1	223	179	218	10.3159
ACUCUGGUGACAAUGGGAUACUCCACAGAACACAGCAUA	chr14:24034691-24034939(-)$1	248	59	98	11.6209
GUGGGGAGGUUGUGAUUGGAGAUGGCAGCUUUCUCAUUA	chr5:78373202-78373526(+)$1	324	122	161	13.3211
ggcgccgggcggagcCGCAGCCGGAGCCGGGGCGCCUGG	chr20:35491740-35492042(-)$1	302	49	88	14.3170
GGAGGGUGUGUGUGAGAGAAGUCCGAGACCAAACCCCUC	chr6:126307679-126308015(+)$1	336	251	290	11.0905
GGGGUGGGAGUGGGUGGGGCCUCAGUCCUUCCACCUGCA	chr19:19105847-19106166(-)$1	319	232	271	12.7355
AGCACCCGUGCGCCAGCCUGUGCUGCGGGCACGGCACGU	chr2:128180520-128180764(+)$1	244	119	158	11.6168
CGCGUUUUCUCUCUCCUUUUUGGAGACAGAUUCGCAGUG	chr1:28832455-28832699(+)$1	244	85	124	10.7298
ACGGGCCCCGGGCUCAGGCCACUGCACGGACCCAGGGAA	chr17:80190050-80190278(+)$1	228	77	116	11.5011
UGGUGUGGACCCUCCCGAUGUGGUGAAGACCACGCCCUG	chr17:78599411-78599694(+)$1	283	120	159	11.2570
CCUCUGCCUGCUUUCUUAACAGGGGGAGCAGGGAGACGA	chr9:117052990-117053200(+)$1	210	77	116	14.0115
CUGCCGGGGAGGCGGCGGCGGCUGCGGCUUCUCUGGGCG	chr12:26985932-26986192(-)$1	260	202	241	12.7552
GAUACAGGCCCGCGCAUGCGCGUGCUCGAGCGCUGAAGC	chr6:30294315-30294597(-)$1	282	137	176	11.5897
acuggggacaguaggcucagcccuAAAGUGCCUUAUUCC	chr3:184103733-184103936(+)$1	203	36	75	11.7202
GGGGGAAGCCAGGGCCUCUGGUAAGUACCUGCUCCUCCA	chr9:116999160-116999402(+)$1	242	134	173	10.8621
AGUGCUGGAGGCUCUGGGGCGAUGGCUUCCGCACCUCUU	chr6:32939492-32939729(+)$1	237	106	145	12.6058
ccugucaguaaagagauaauaauggcuguaccucgcggg	chr15:42129578-42129861(+)$1	283	79	118	12.5760
ggaagaagaagGUGAUGGUGAGUAGCCUUGUCUAUCUUC	chr2:232576587-232576794(+)$1	207	89	128	10.9931
GGGAGAAGAGGCUGCCCUCAAUGGAUGCCUUUUCUCCCA	chr17:34856573-34856893(-)$1	320	54	93	14.1754
UGGCAGGACAGAGCGGGAUGCCACCAGCUUGUCCAAAGG	chr2:61405877-61406193(+)$1	316	232	271	10.7116
UUCUGGGCAAAGUGGAGCGGAUCGAUUGAGCCCUGGGGU	chr17:63525938-63526230(-)$1	292	108	147	11.3157
GGGCCUCAGGGGACUGGCCAGCCCUGCUCCUGUGGGCAC	chr16:75298138-75298376(-)$1	238	44	83	10.9975
GGCUCAGCCUCCAGCCCAGGUGGCGCUGUGGACCCUGCA	chr2:27593044-27593302(-)$1	258	18	57	10.3320
CCUCUGCCUGCUUUCUUAACAGGGGGAGCAGGGAGACGA	chr9:117053000-117053242(+)$1	242	67	106	14.0115
CUGCAGAAGACCUCCCGAGGUGGAUGUUACUGAGCCGCC	chr4:124319265-124319549(+)$1	284	101	140	12.4421
UAUUUUUAUAGGGGUUAGGUUGAAUUUCUUAAAAUACAG	chr2:39570422-39570694(-)$1	272	181	220	14.3438
CAGGCCGAGGCUGCAGGGCUGCUGUCUGCCUCUUUACCU	chr16:457353-457644(+)$1	291	23	62	11.4711
CCACGAGGAGAGCAGUGAGACCAUGAAUGACUUGCUGGC	chr14:24034223-24034442(-)$1	219	72	111	12.8088
GUUCCUAUCCCGCGCCGGCAGGGGGAGGGGAAAGGGGCC	chr18:55711818-55712041(+)$1	223	161	200	10.6335
UGGGCAACGGGUAAGUUGAAGCAAUUUAUUCUUCCUGAA	chr9:117031420-117031672(+)$1	252	144	183	12.4136
CCCUUGCAGCCUGUUGACUUUCUCCAGGAGCCGUGGGUG	chr16:841221-841474(+)$1	253	209	248	9.8204
CGGAUGCGGCGCCGGAUGAGGAUGAGGCGUGGCGGAAGA	chr5:176980112-176980428(-)$1	316	109	148	12.4983
UGUCCAGCGCGGAGGGCGCUGUCCCCAAACUGGACAAGG	chr16:89350981-89351318(-)$1	337	203	242	12.5383
CAGGGAUCUGGUCCUUAAGGUAAGGCUUCUUCUUCCCUC	chr14:21463233-21463495(+)$1	262	140	179	10.9536
UGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAAGCC	chr14:70238176-70238445(+)$1	269	173	212	15.1253
AGUGCUGGAGGCUCUGGGGCGAUGGCUUCCGCACCUCUU	chr6:32939471-32939692(+)$1	221	127	166	12.6058
UGGGGCCGGGCCUGGCGGAUCCGCAGGGCUUGCGUGGAC	chr6:167412764-167413112(+)$1	348	252	291	12.9757
ggaagaagaagGUGAUGGUGAGUAGCCUUGUCUAUCUUC	chr2:232576581-232576787(+)$1	206	95	134	10.9931
ACGGGCGGGCCUUGCCAACUCUGGCCUGGGGUGUUGGCU	chr4:1229637-1229942(-)$1	305	16	55	11.5012
GGGAGCGCUGAUGAAGAUGGAUGUGUCAGUGAGGGCCGC	chr12:104697593-104697964(+)$1	371	109	148	10.1622
GCUGGGUCUCUUCACAUGAAGAUCGAAAAGGGACCCUGC	chr17:47005906-47006180(+)$1	274	167	206	15.1635
CCAGGUGGAGCCGGUGCCCUGGGCGGACGCCUUCGCCGG	chr16:89346553-89346829(-)$1	276	218	257	12.5798
cccccggagccgggcgggcgucccgagccgggcccgcgg	chr2:54197728-54198041(-)$1	313	153	192	13.5760
CCAGCUACAGGCAAACCUCCUGGUACAGGCUGGCUGGGG	chr16:24802721-24802990(+)$1	269	119	158	10.5999
GGGUGCGACCGGGGUCUCACGUGGACGCGGGUUGCAGGC	chr2:71357672-71357977(+)$1	305	236	275	11.9220

#DB
)))(((((.((((((((....)))...))))).))))).	chr2:208633886-208634134(-)$1	1	52	91	11.1929
((.(((((((((....(((...)))...))))).)).))	chr17:48629360-48629630(+)$1	1	24	63	9.7543
(((((((..((.((((......)))).)).)))))))))	chr14:35747709-35748024(+)$1	1	200	239	13.0710
((.(((((((((.((......)).)..)))))))).)).	chr6:127587957-127588278(+)$1	1	270	309	9.8385
((((((((((((.((((....)))))))))))...))))	chr21:16436954-16437212(-)$1	1	204	243	12.6624
((((....(((.(((((......))..))).)))...))	chr20:32247183-32247462(-)$1	1	229	268	12.7367
((((((((.(((((.(((...)).).))))).))....)	chr16:22337033-22337349(+)$1	1	235	274	10.2332
((((.(((((((.((((......)))).))).)))).))	chr9:117050880-117051123(+)$1	1	30	69	10.6920
(((..((((((((.(((....))).))).)))))..)))	chr17:8378189-8378496(+)$1	1	193	232	11.2977
.((((((((((.(((((....)))).).))))))...))	chr2:128180564-128180784(+)$1	1	75	114	11.6168
.(((..((((.((((......))))..))))..)))...	chr3:48445743-48445997(-)$1	1	114	153	12.2577
(((...(((((((.(......).)))))))...))).))	chr8:124408489-124408772(-)$1	1	57	96	13.5533
((((.(...(((((((((...)))...)).))))...).	chr7:77166718-77166990(+)$1	1	146	185	12.4483
((.(((((.((((((((...))))).))).)))))..))	chr17:40269709-40269932(-)$1	1	179	218	10.3159
(..(((((.....((((....))))....)).)))....	chr14:24034691-24034939(-)$1	1	59	98	11.6209
(((((((((((((.(((...))).)))))))))))))..	chr5:78373202-78373526(+)$1	1	122	161	13.3211
((((((...(((..(((....)))..))).)))))))((	chr20:35491740-35492042(-)$1	1	49	88	14.3170
.(((((.((((.(..((....))..).))...)))))))	chr6:126307679-126308015(+)$1	1	251	290	11.0905
.(((((((((.((.(((....))).))))))))))))).	chr19:19105847-19106166(-)$1	1	232	271	12.7355
.((((((((((.(((((....)))).).))))))...))	chr2:128180520-128180764(+)$1	1	119	158	11.6168
.(((...(((.(((((.....))))).)))..)))....	chr1:28832455-28832699(+)$1	1	85	124	10.7298
.((..(((.((((((((....)))...)).))).)))..	chr17:80190050-80190278(+)$1	1	77	116	11.5011
.(((((((....((((.....)).))...)))))))).)	chr17:78599411-78599694(+)$1	1	120	159	11.2570
(.(((.(((((((((((....))))))))))).))).))	chr9:117052990-117053200(+)$1	1	77	116	14.0115
)))((((((((((.((((...)))).)))))))))))))	chr12:26985932-26986192(-)$1	1	202	241	12.7552
(...(((((.((.((((....)))).)).)).)))...)	chr6:30294315-30294597(-)$1	1	137	176	11.5897
(..(((.((..((((......))))..)).)))..))).	chr3:184103733-184103936(+)$1	1	36	75	11.7202
((((((.((.(((..((......))..))))))))))).	chr9:116999160-116999402(+)$1	1	134	173	10.8621
.((((.(((((((.(......).))))))))))))))))	chr6:32939492-32939729(+)$1	1	106	145	12.6058
(((((..(((.((..((....))..)).)))...)))))	chr15:42129578-42129861(+)$1	1	79	118	12.5760
((((((..(((((.((.....)).))))).))).)))))	chr2:232576587-232576794(+)$1	1	89	128	10.9931
((((((((((((...((.....))..)))))))))))).	chr17:34856573-34856893(-)$1	1	54	93	14.1754
(....(((((.(((.((......)).))))))))..)))	chr2:61405877-61406193(+)$1	1	232	271	10.7116
((((((((..(((.((.....)).)))..)))).)))))	chr17:63525938-63526230(-)$1	1	108	147	11.3157
(.((((((((((...((....))...)))))).)))).)	chr16:75298138-75298376(-)$1	1	44	83	10.9975
(((((((((..((((((....)).)))).))...))).)	chr2:27593044-27593302(-)$1	1	18	57	10.3320
(.(((.(((((((((((....))))))))))).))).))	chr9:117053000-117053242(+)$1	1	67	106	14.0115
((.(((..(((.(((......))).))).))))))).))	chr4:124319265-124319549(+)$1	1	101	140	12.4421
((((((...(((((((......))))))).)))))))))	chr2:39570422-39570694(-)$1	1	181	220	14.3438
((((..(((((.((((.....))))..)))))....)))	chr16:457353-457644(+)$1	1	23	62	11.4711
...((((..(....(((....)))...)..)))))))))	chr14:24034223-24034442(-)$1	1	72	111	12.8088
((((((.((((.(.((.....)).)..)))).)))))).	chr18:55711818-55712041(+)$1	1	161	200	10.6335
((((.((.((((((((((...))))))))))))))))).	chr9:117031420-117031672(+)$1	1	144	183	12.4136
(((.((...((((..((...))..))))...)).)))))	chr16:841221-841474(+)$1	1	209	248	9.8204
(...(((.(((((..((....))..))))).)))...))	chr5:176980112-176980428(-)$1	1	109	148	12.4983
(((((((...((.((((...))))))...))))))).))	chr16:89350981-89351318(-)$1	1	203	242	12.5383
.(((((...((.(((((...)))))...))...))))).	chr14:21463233-21463495(+)$1	1	140	179	10.9536
((((((((....(((......)))...))))))))).))	chr14:70238176-70238445(+)$1	1	173	212	15.1253
.((((.(((((((.(......).))))))))))))))))	chr6:32939471-32939692(+)$1	1	127	166	12.6058
((..(((((((((.(((....))).))))))).))...)	chr6:167412764-167413112(+)$1	1	252	291	12.9757
((((((..(((((.((.....)).))))).))).)))))	chr2:232576581-232576787(+)$1	1	95	134	10.9931
((((.((.(((((((((....))))..)))))..)).))	chr4:1229637-1229942(-)$1	1	16	55	11.5012
.....(((((((..(......)..)))))))...)))))	chr12:104697593-104697964(+)$1	1	109	148	10.1622
((.(((((((((..(((....)).)..))))))))).))	chr17:47005906-47006180(+)$1	1	167	206	15.1635
((.(((((((.((.((((...))))..)).)))))))))	chr16:89346553-89346829(-)$1	1	218	257	12.5798
(((((((.(((.((((((...)))..))).)))))).))	chr2:54197728-54198041(-)$1	1	153	192	13.5760
((((((.(((.(..(((....)))...).)))(((((((	chr16:24802721-24802990(+)$1	1	119	158	10.5999
(..(((((((.(.((((.....)))).).)))))))..)	chr2:71357672-71357977(+)$1	1	236	275	11.9220

#PSSM
e : 0.13	d : 0.12	f : 0.10	[ : 0.10	g : 0.10	= : 0.08	b : 0.06	c : 0.06	i : 0.03	$ : 0.03	" : 0.01	: : 0.01	% : 0.01	a : 0.01	h : 0.01	! : 0.01	' : 0.01	F : 0.01	
d : 0.18	e : 0.13	f : 0.10	g : 0.10	= : 0.08	c : 0.06	i : 0.05	! : 0.05	[ : 0.05	b : 0.03	" : 0.03	# : 0.01	h : 0.01	$ : 0.01	' : 0.01	F : 0.01	
d : 0.15	e : 0.12	f : 0.10	[ : 0.10	g : 0.10	c : 0.08	! : 0.06	= : 0.06	i : 0.05	" : 0.03	b : 0.01	# : 0.01	h : 0.01	$ : 0.01	' : 0.01	F : 0.01	
c : 0.15	e : 0.13	d : 0.13	g : 0.13	= : 0.08	i : 0.06	f : 0.05	! : 0.05	" : 0.05	h : 0.03	b : 0.01	# : 0.01	[ : 0.01	' : 0.01	F : 0.01	
c : 0.18	d : 0.12	g : 0.10	e : 0.08	i : 0.06	[ : 0.06	! : 0.06	= : 0.06	b : 0.05	f : 0.05	# : 0.03	" : 0.03	h : 0.01	' : 0.01	F : 0.01	
c : 0.17	g : 0.12	e : 0.10	b : 0.08	f : 0.08	i : 0.06	d : 0.06	= : 0.06	[ : 0.06	! : 0.05	" : 0.03	h : 0.01	# : 0.01	a : 0.01	F : 0.01	
g : 0.17	" : 0.10	e : 0.08	b : 0.08	= : 0.08	c : 0.08	i : 0.06	d : 0.06	[ : 0.06	! : 0.06	f : 0.05	h : 0.01	# : 0.01	: : 0.01	
g : 0.15	b : 0.12	e : 0.10	" : 0.10	! : 0.08	= : 0.08	d : 0.06	c : 0.06	[ : 0.06	f : 0.05	i : 0.05	h : 0.01	# : 0.01	
e : 0.13	g : 0.13	c : 0.10	" : 0.10	= : 0.10	b : 0.08	[ : 0.06	! : 0.05	d : 0.05	f : 0.05	i : 0.03	# : 0.03	h : 0.01	$ : 0.01	
e : 0.17	c : 0.17	g : 0.15	= : 0.10	d : 0.06	b : 0.05	f : 0.05	! : 0.05	i : 0.03	# : 0.03	[ : 0.03	h : 0.01	$ : 0.01	a : 0.01	" : 0.01	
c : 0.17	e : 0.13	[ : 0.13	g : 0.12	= : 0.10	b : 0.08	f : 0.05	d : 0.05	# : 0.05	! : 0.03	h : 0.01	$ : 0.01	i : 0.01	
[ : 0.17	e : 0.13	c : 0.13	g : 0.12	= : 0.10	d : 0.08	b : 0.08	a : 0.05	# : 0.05	$ : 0.01	f : 0.01	i : 0.01	
e : 0.15	c : 0.13	d : 0.12	[ : 0.10	g : 0.08	= : 0.08	b : 0.08	a : 0.06	! : 0.06	# : 0.03	" : 0.03	$ : 0.01	
d : 0.24	[ : 0.22	! : 0.15	e : 0.08	c : 0.08	b : 0.06	= : 0.05	# : 0.03	" : 0.03	g : 0.01	
d : 0.27	c : 0.22	b : 0.12	a : 0.08	! : 0.08	e : 0.05	= : 0.05	[ : 0.03	" : 0.03	# : 0.01	g : 0.01	
b : 0.27	d : 0.22	c : 0.18	o : 0.15	e : 0.05	= : 0.05	# : 0.01	a : 0.01	g : 0.01	
c : 0.20	b : 0.20	o : 0.18	d : 0.18	n : 0.12	= : 0.05	e : 0.03	
m : 0.37	o : 0.25	n : 0.15	l : 0.08	c : 0.05	d : 0.03	b : 0.01	= : 0.01	
m : 0.37	o : 0.25	l : 0.18	n : 0.15	c : 0.01	
m : 0.37	o : 0.25	l : 0.20	n : 0.15	
m : 0.37	o : 0.25	n : 0.15	l : 0.12	e : 0.03	c : 0.01	b : 0.01	d : 0.01	
b : 0.24	c : 0.22	d : 0.20	o : 0.10	a : 0.06	e : 0.05	= : 0.05	n : 0.03	l : 0.01	
c : 0.24	d : 0.24	b : 0.24	o : 0.06	] : 0.05	e : 0.05	= : 0.05	2 : 0.03	g : 0.01	
d : 0.25	c : 0.22	] : 0.17	2 : 0.08	b : 0.06	g : 0.06	e : 0.05	= : 0.05	3 : 0.01	
d : 0.27	3 : 0.12	2 : 0.10	b : 0.08	g : 0.08	e : 0.08	a : 0.06	] : 0.06	= : 0.06	c : 0.03	
2 : 0.22	3 : 0.15	g : 0.12	] : 0.12	d : 0.08	= : 0.06	b : 0.06	e : 0.06	c : 0.05	4 : 0.01	a : 0.01	
3 : 0.17	2 : 0.17	g : 0.12	c : 0.12	= : 0.10	] : 0.06	e : 0.06	d : 0.05	b : 0.05	a : 0.03	4 : 0.01	f : 0.01	
c : 0.15	e : 0.12	b : 0.12	g : 0.12	= : 0.10	3 : 0.06	] : 0.06	d : 0.06	i : 0.05	a : 0.05	h : 0.01	4 : 0.01	2 : 0.01	f : 0.01	
c : 0.15	e : 0.13	b : 0.12	g : 0.12	] : 0.10	= : 0.10	f : 0.05	i : 0.05	3 : 0.05	d : 0.03	2 : 0.03	h : 0.01	4 : 0.01	
] : 0.18	g : 0.15	e : 0.13	c : 0.12	= : 0.10	b : 0.06	f : 0.05	d : 0.05	i : 0.05	3 : 0.03	h : 0.01	2 : 0.01	
c : 0.15	e : 0.13	g : 0.13	d : 0.12	= : 0.12	i : 0.06	3 : 0.06	b : 0.06	f : 0.05	] : 0.03	h : 0.01	2 : 0.01	
c : 0.15	e : 0.12	g : 0.12	3 : 0.10	= : 0.10	] : 0.08	d : 0.08	i : 0.06	f : 0.05	b : 0.05	2 : 0.03	h : 0.01	
c : 0.17	d : 0.12	3 : 0.10	g : 0.10	] : 0.08	e : 0.06	i : 0.06	b : 0.06	f : 0.06	= : 0.06	2 : 0.03	h : 0.01	4 : 0.01	
c : 0.17	d : 0.12	e : 0.10	] : 0.10	g : 0.10	i : 0.06	3 : 0.06	f : 0.06	= : 0.06	b : 0.05	2 : 0.03	h : 0.01	4 : 0.01	
c : 0.17	g : 0.15	e : 0.12	3 : 0.10	= : 0.10	i : 0.06	f : 0.06	b : 0.05	d : 0.05	2 : 0.05	4 : 0.03	h : 0.01	
g : 0.15	c : 0.13	e : 0.12	3 : 0.12	= : 0.10	i : 0.06	4 : 0.06	f : 0.06	d : 0.05	2 : 0.05	b : 0.03	] : 0.01	
] : 0.18	e : 0.15	3 : 0.13	g : 0.10	= : 0.08	f : 0.06	4 : 0.05	c : 0.05	b : 0.03	d : 0.03	2 : 0.03	i : 0.01	a : 0.01	F : 0.01	
e : 0.18	d : 0.12	g : 0.12	b : 0.10	f : 0.08	= : 0.06	4 : 0.05	3 : 0.05	c : 0.05	] : 0.05	2 : 0.03	i : 0.01	a : 0.01	: : 0.01	F : 0.01	
e : 0.15	d : 0.13	g : 0.12	b : 0.08	2 : 0.08	] : 0.06	f : 0.06	: : 0.05	= : 0.05	c : 0.03	4 : 0.03	a : 0.03	i : 0.01	3 : 0.01	F : 0.01	h : 0.01	

#score	695.6482162336225
#seq	58
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_transcript_m3_run1.txt

#BEAR
bbffffffuuuuuuuuuuuuffffff	chr1:180953703-180954022(-)$1	319	265	291	23.1691
ggffffffuuuuuuuuuuuuffffff	chr1:43826486-43826709(+)$1	223	195	221	23.6565
[gggggggtttttttttttggggggg	chr22:26270157-26270398(+)$1	241	22	48	24.6917
::fffffftttttttttttffffff:	chr17:66040328-66040591(+)$1	263	133	159	21.5047
ggggggwwwwwwwwwwwwwwgggggg	chr17:5445079-5445357(-)$1	278	250	276	22.5262
cc[cccvvvvvvvvvvvvvccc]ccc	chr20:47607474-47607718(+)$1	244	133	159	23.1706
eeee[cccvvvvvvvvvvvvvccc]e	chr4:80976238-80976495(-)$1	257	100	126	22.8834
iiiiiiiivvvvvvvvvvvvviiiii	chr17:45258808-45259060(-)$1	252	207	233	23.4023
###eeeeeuuuuuuuuuuuueeeee4	chr10:79571994-79572241(-)$1	247	73	99	23.2213
iiiiiiiitttttttttttiiiiiii	chr5:138994062-138994313(+)$1	251	110	136	24.2374
!!cccwwwwwwwwwwwwwwccc22dd	chr11:134078704-134078952(-)$1	248	130	156	20.9902
ddd!!cccuuuuuuuuuuuuccc]dd	chr2:203772500-203772797(-)$1	297	123	149	23.0631
hhhhhccctttttttttttccc]hhh	chr12:133237907-133238204(-)$1	297	175	201	23.2355
cc"""cccuuuuuuuuuuuuccc444	chr17:4077106-4077428(-)$1	322	95	121	23.2326
::fffffftttttttttttffffffe	chr19:964997-965243(+)$1	246	207	233	22.3549
ggggggbbtttttttttttbb]gggg	chr20:60906048-60906301(-)$1	253	88	114	24.2528
ccceeeeevvvvvvvvvvvvveeeee	chr5:137281528-137281822(-)$1	294	184	210	22.6841
i"""ddddtttttttttttdddd333	chr1:70716460-70716702(+)$1	242	46	72	23.1914
ffffffwwwwwwwwwwwwwwffffff	chr7:92207293-92207546(-)$1	253	128	154	21.6385
$$$$cccuuuuuuuuuuuuccc333d	chr7:72952214-72952522(-)$1	308	87	113	22.8074
iiiiiiiitttttttttttiiiiiii	chr16:74333911-74334148(+)$1	237	120	146	24.2374
ffffff[attttttttttta]fffff	chr16:15123692-15123942(+)$1	250	34	60	24.0451
ccc[ddddtttttttttttdddd]cc	chr6:49583319-49583595(-)$1	276	148	174	23.1678
d!!bb[bbtttttttttttbbbb22d	chr22:19870856-19871090(-)$1	234	203	229	22.3978
))ccc[bbtttttttttttbb]ccc0	chr7:138203811-138204066(+)$1	255	65	91	22.4822
!ccc[cccuuuuuuuuuuuuccc]cc	chr4:2514704-2514958(+)$1	254	44	70	24.0515
:::eeeeettttttttttteeeeedd	chr1:109823309-109823568(-)$1	259	128	154	20.6097
hhhh[bbuuuuuuuuuuuubb]hhhh	chr6:29574082-29574329(-)$1	247	17	43	21.7357
#ffffffvvvvvvvvvvvvvffffff	chr22:50662420-50662675(-)$1	255	54	80	23.7141
"eeeeevvvvvvvvvvvvveeeee33	chr17:30689781-30690074(+)$1	293	80	106	22.8640
[eeeeewwwwwwwwwwwwwweeeee]	chr1:113638393-113638673(+)$1	280	118	144	21.6620
ggggg[bbtttttttttttbbggggg	chr8:144895951-144896176(-)$1	225	84	110	24.3412
dddbb[bbtttttttttttbb]bb]d	chr6:36568835-36569073(+)$1	238	38	64	22.0206
g:fffffftttttttttttffffffB	chr16:72134280-72134533(+)$1	253	167	193	22.2978
Ggggggggtttttttttttggggggg	chr17:47119582-47119843(+)$1	261	221	247	24.1005
ggbb!!bbuuuuuuuuuuuubb22bb	chr19:18466596-18466870(+)$1	274	44	70	21.7135
&ffffffvvvvvvvvvvvvvffffff	chr1:202465805-202466063(+)$1	258	82	108	23.1276
bbfffffftttttttttttffffff:	chr12:6860678-6860952(-)$1	274	161	187	22.7740
hhhhhhhhttttttttttthhhhhhh	chr8:48875277-48875519(+)$1	242	134	160	21.8548
hhhhhhhuuuuuuuuuuuuhhhhhhh	chr11:73962606-73962857(+)$1	251	61	87	21.3924
"gggggggtttttttttttggggggg	chr8:38912981-38913237(+)$1	256	203	229	24.6996
ggggg[bbtttttttttttbb]gggg	chr11:12785808-12786101(+)$1	293	149	175	24.2873
ffeeeeeattttttttttta]eeeee	chr18:23847339-23847618(+)$1	279	115	141	23.6957
F:fffffftttttttttttffffffC	chr1:153591335-153591612(-)$1	277	10	36	21.6836
!dddd[bbuuuuuuuuuuuubb22dd	chr6:57016907-57017160(+)$1	253	141	167	22.0665
""eeeeevvvvvvvvvvvvveeeee]	chr10:6143194-6143446(+)$1	252	43	69	23.5866
""ffffffuuuuuuuuuuuuffffff	chr19:45562408-45562672(+)$1	264	18	44	23.8035
hhhhhh[attttttttttta]hhhhh	chr9:139720414-139720641(+)$1	227	186	212	22.9185
a[cccwwwwwwwwwwwwwwccca]ff	chr17:27438750-27438963(-)$1	213	180	206	21.2430
!a!!ddddtttttttttttdddd22a	chr17:77076906-77077145(+)$1	239	115	141	23.0950
:gggggggtttttttttttggggggg	chr5:6616817-6617072(-)$1	255	33	59	23.7499
:gggggggtttttttttttggggggg	chr22:35681887-35682144(+)$1	257	145	171	23.7499
e"""cccuuuuuuuuuuuuccc333e	chr20:33591669-33591963(-)$1	294	4	30	23.3937
hhhhddddvvvvvvvvvvvvvdddd2	chr22:21348461-21348744(+)$1	283	213	239	21.2470
eee[ddddtttttttttttdddd444	chr16:8943582-8943836(+)$1	254	204	230	22.5658
d!!eeeeettttttttttteeeee]d	chr7:44154406-44154648(-)$1	242	194	220	23.7065
""eeeeevvvvvvvvvvvvveeeee2	chr2:64796640-64796960(+)$1	320	247	273	23.3802
!!eeeeeuuuuuuuuuuuueeeee]a	chr3:119153572-119153880(-)$1	308	151	177	23.4170
dffffffvvvvvvvvvvvvvffffff	chr1:19451060-19451273(-)$1	213	23	49	23.4077

#otherMatches

#Seq PSSM
GGGGGUGUUGUCUCAUAGUUAUGCCC	chr1:180953703-180954022(-)$1	319	265	291	23.1691
GGACUGUUAAGGGGAGAAGGGAUGGU	chr1:43826486-43826709(+)$1	223	195	221	23.6565
AUUUGCAAGCACCCCCCCAUUGUAGA	chr22:26270157-26270398(+)$1	241	22	48	24.6917
CUGUGUGGGCCGUGACCAACUAUACC	chr17:66040328-66040591(+)$1	263	133	159	21.5047
GAGCAGAGAGAAGGUGAGACCUGCUU	chr17:5445079-5445357(-)$1	278	250	276	22.5262
CUCGCUUCUCCCUACUCACAGCCAGC	chr20:47607474-47607718(+)$1	244	133	159	23.1706
cuuucccuccucauucucCAUAGGCA	chr4:80976238-80976495(-)$1	257	100	126	22.8834
AACAAGAUUCUAGCUAUCAUCAUCUU	chr17:45258808-45259060(-)$1	252	207	233	23.4023
CCUGAGUCCCCGAAACUUUUGACUUU	chr10:79571994-79572241(-)$1	247	73	99	23.2213
UUCCAUUGGCAAGCUACAAUAAUGGG	chr5:138994062-138994313(+)$1	251	110	136	24.2374
UACCAGAACUGGCUUAUUAUGGAUUG	chr11:134078704-134078952(-)$1	248	130	156	20.9902
UAGAUGAUGUUCCCUUCUCAAUCCCU	chr2:203772500-203772797(-)$1	297	123	149	23.0631
GAGCCAGGAUAGAAACAGACCUGGGU	chr12:133237907-133238204(-)$1	297	175	201	23.2355
GUGAACGAAUUAACCAAGCAUCGCCA	chr17:4077106-4077428(-)$1	322	95	121	23.2326
AAAGGGCUUCCAAUCUACCAGUCCUC	chr19:964997-965243(+)$1	246	207	233	22.3549
UUGCAGCAUCUCGUCCCUCUGCCUGC	chr20:60906048-60906301(-)$1	253	88	114	24.2528
AGGCUUGUAAAACAAAUGCUGACAAG	chr5:137281528-137281822(-)$1	294	184	210	22.6841
UCCAACUGUAUACCUGCAUCAGUGUC	chr1:70716460-70716702(+)$1	242	46	72	23.1914
AACAAAAAAAGUAAGAAUAAUUUGUU	chr7:92207293-92207546(-)$1	253	128	154	21.6385
ACCAAGCCACCUCCACACAGCUCUAA	chr7:72952214-72952522(-)$1	308	87	113	22.8074
CAGAAGCGUGUUGUUGGUGUGCUUUU	chr16:74333911-74334148(+)$1	237	120	146	24.2374
GGGGCCGAGGGGAUGAGGGUGGGUCC	chr16:15123692-15123942(+)$1	250	34	60	24.0451
UUGGGGCCUACUUUGGCUUGGCUGUA	chr6:49583319-49583595(-)$1	276	148	174	23.1678
CUCUGUGCCCCACAUCUACGCCAUUG	chr22:19870856-19871090(-)$1	234	203	229	22.3978
UUAUUUACUAUUCAAUUAUGUUAAUU	chr7:138203811-138204066(+)$1	255	65	91	22.4822
ACAGGGUAUAAUAAAAUGUUUGCGUU	chr4:2514704-2514958(+)$1	254	44	70	24.0515
CAAGCACUGCAGGACACAGAGUGCGG	chr1:109823309-109823568(-)$1	259	128	154	20.6097
GAGGAGGGGAGGCUGGCAACCAUCUU	chr6:29574082-29574329(-)$1	247	17	43	21.7357
ACAGGGAGAGAAGGCUGAAGUCCCUG	chr22:50662420-50662675(-)$1	255	54	80	23.7141
UAGCCAGAAUAUUUUUUAAUGGUUUA	chr17:30689781-30690074(+)$1	293	80	106	22.8640
AACCUUACACGAGUAAACAAGGGGUG	chr1:113638393-113638673(+)$1	280	118	144	21.6620
CUGUCCACUGUGACCCUCUGUGACAG	chr8:144895951-144896176(-)$1	225	84	110	24.3412
UCACGCCAUAAAUACUAAUUGAUGAU	chr6:36568835-36569073(+)$1	238	38	64	22.0206
CAAUCUGGUGCCUCCCUUUCUGGAUG	chr16:72134280-72134533(+)$1	253	167	193	22.2978
UGCAGGGUGAUGGACAUGUGCCCUGU	chr17:47119582-47119843(+)$1	261	221	247	24.1005
GAGAGCGCAUUAUCCCCAUAGCUGUC	chr19:18466596-18466870(+)$1	274	44	70	21.7135
UUCUUCCCUUUUCUUUUUUAGGAGGA	chr1:202465805-202466063(+)$1	258	82	108	23.1276
CCUGUGUCCUUCCAUCUCAGACACAC	chr12:6860678-6860952(-)$1	274	161	187	22.7740
UUGGGGAGGUAAUCAAAUACUCUUUA	chr8:48875277-48875519(+)$1	242	134	160	21.8548
CCUGGAAUAUCUCUCCCAUUUCCAGG	chr11:73962606-73962857(+)$1	251	61	87	21.3924
AGAUGUUUUUAUUCAGAAUGGAUAUC	chr8:38912981-38913237(+)$1	256	203	229	24.6996
UAUCAGACGAAGGCAAAAUGUAUGGU	chr11:12785808-12786101(+)$1	293	149	175	24.2873
UAUCUUGCUCCCCUCCACCGCCAAGA	chr18:23847339-23847618(+)$1	279	115	141	23.6957
GAGAGAAUAGCAGCUGACAGUUCUUC	chr1:153591335-153591612(-)$1	277	10	36	21.6836
ACUGUAAGAUUUAUAACUACCUGAAC	chr6:57016907-57017160(+)$1	253	141	167	22.0665
AAAGGACGAAACAAAGUACAGUCCUC	chr10:6143194-6143446(+)$1	252	43	69	23.5866
CUGGCGGGCGCCCCAUCAUCCCCGCC	chr19:45562408-45562672(+)$1	264	18	44	23.8035
GCCUGGCGGAGUAGCCCAGCACCAGG	chr9:139720414-139720641(+)$1	227	186	212	22.9185
GCGCCUUUUCUCCUAUUAUGGCCCCC	chr17:27438750-27438963(-)$1	213	180	206	21.2430
AACAUGCCUCCUUUCCUGCGGUACCU	chr17:77076906-77077145(+)$1	239	115	141	23.0950
GGAGGUGCUUCUAAUAUGUGCACUUC	chr5:6616817-6617072(-)$1	255	33	59	23.7499
AUUACCAGAAAAAGACAAACUGGUAA	chr22:35681887-35682144(+)$1	257	145	171	23.7499
cccaacucccucacugaauagucaug	chr20:33591669-33591963(-)$1	294	4	30	23.3937
gcaggucacccuccuuacccaugauc	chr22:21348461-21348744(+)$1	283	213	239	21.2470
GCAUGCACAACAUGUCCUGGUGCCUU	chr16:8943582-8943836(+)$1	254	204	230	22.5658
GCCAGCCCAUCAGCUUCUCGGGCUUC	chr7:44154406-44154648(-)$1	242	194	220	23.7065
CUAUGUCAUGCUAUAUAAGAGACAUU	chr2:64796640-64796960(+)$1	320	247	273	23.3802
UUGGUCAGAAAAUACAAUAUGGCCUC	chr3:119153572-119153880(-)$1	308	151	177	23.4170
UUUUUCCUAAUUGUGGUCAUGGAAAA	chr1:19451060-19451273(-)$1	213	23	49	23.4077

#DB
((((((((............))))))	chr1:180953703-180954022(-)$1	1	265	291	23.1691
))((((((............))))))	chr1:43826486-43826709(+)$1	1	195	221	23.6565
.(((((((...........)))))))	chr22:26270157-26270398(+)$1	1	22	48	24.6917
..((((((...........)))))).	chr17:66040328-66040591(+)$1	1	133	159	21.5047
((((((..............))))))	chr17:5445079-5445357(-)$1	1	250	276	22.5262
((.(((.............))).)))	chr20:47607474-47607718(+)$1	1	133	159	23.1706
((((.(((.............))).)	chr4:80976238-80976495(-)$1	1	100	126	22.8834
((((((((.............)))))	chr17:45258808-45259060(-)$1	1	207	233	23.4023
...(((((............))))).	chr10:79571994-79572241(-)$1	1	73	99	23.2213
((((((((...........)))))))	chr5:138994062-138994313(+)$1	1	110	136	24.2374
..(((..............)))..))	chr11:134078704-134078952(-)$1	1	130	156	20.9902
(((..(((............))).))	chr2:203772500-203772797(-)$1	1	123	149	23.0631
((((((((...........))).)))	chr12:133237907-133238204(-)$1	1	175	201	23.2355
((...(((............)))...	chr17:4077106-4077428(-)$1	1	95	121	23.2326
..((((((...........))))))(	chr19:964997-965243(+)$1	1	207	233	22.3549
((((((((...........)).))))	chr20:60906048-60906301(-)$1	1	88	114	24.2528
)))(((((.............)))))	chr5:137281528-137281822(-)$1	1	184	210	22.6841
(...((((...........))))...	chr1:70716460-70716702(+)$1	1	46	72	23.1914
((((((..............))))))	chr7:92207293-92207546(-)$1	1	128	154	21.6385
....(((............)))...)	chr7:72952214-72952522(-)$1	1	87	113	22.8074
((((((((...........)))))))	chr16:74333911-74334148(+)$1	1	120	146	24.2374
((((((.(...........).)))))	chr16:15123692-15123942(+)$1	1	34	60	24.0451
(((.((((...........)))).))	chr6:49583319-49583595(-)$1	1	148	174	23.1678
(..((.((...........))))..)	chr22:19870856-19871090(-)$1	1	203	229	22.3978
..(((.((...........)).))).	chr7:138203811-138204066(+)$1	1	65	91	22.4822
.(((.(((............))).))	chr4:2514704-2514958(+)$1	1	44	70	24.0515
...(((((...........)))))((	chr1:109823309-109823568(-)$1	1	128	154	20.6097
((((.((............)).))))	chr6:29574082-29574329(-)$1	1	17	43	21.7357
.((((((.............))))))	chr22:50662420-50662675(-)$1	1	54	80	23.7141
.(((((.............)))))..	chr17:30689781-30690074(+)$1	1	80	106	22.8640
.(((((..............))))).	chr1:113638393-113638673(+)$1	1	118	144	21.6620
(((((.((...........)))))))	chr8:144895951-144896176(-)$1	1	84	110	24.3412
(((((.((...........)).)).)	chr6:36568835-36569073(+)$1	1	38	64	22.0206
).((((((...........)))))))	chr16:72134280-72134533(+)$1	1	167	193	22.2978
)(((((((...........)))))))	chr17:47119582-47119843(+)$1	1	221	247	24.1005
((((..((............))..))	chr19:18466596-18466870(+)$1	1	44	70	21.7135
.((((((.............))))))	chr1:202465805-202466063(+)$1	1	82	108	23.1276
))((((((...........)))))).	chr12:6860678-6860952(-)$1	1	161	187	22.7740
((((((((...........)))))))	chr8:48875277-48875519(+)$1	1	134	160	21.8548
(((((((............)))))))	chr11:73962606-73962857(+)$1	1	61	87	21.3924
.(((((((...........)))))))	chr8:38912981-38913237(+)$1	1	203	229	24.6996
(((((.((...........)).))))	chr11:12785808-12786101(+)$1	1	149	175	24.2873
))((((((...........).)))))	chr18:23847339-23847618(+)$1	1	115	141	23.6957
(.((((((...........))))))(	chr1:153591335-153591612(-)$1	1	10	36	21.6836
.((((.((............))..))	chr6:57016907-57017160(+)$1	1	141	167	22.0665
..(((((.............))))).	chr10:6143194-6143446(+)$1	1	43	69	23.5866
..((((((............))))))	chr19:45562408-45562672(+)$1	1	18	44	23.8035
((((((.(...........).)))))	chr9:139720414-139720641(+)$1	1	186	212	22.9185
(.(((..............)))).))	chr17:27438750-27438963(-)$1	1	180	206	21.2430
.(..((((...........))))..)	chr17:77076906-77077145(+)$1	1	115	141	23.0950
.(((((((...........)))))))	chr5:6616817-6617072(-)$1	1	33	59	23.7499
.(((((((...........)))))))	chr22:35681887-35682144(+)$1	1	145	171	23.7499
(...(((............)))...)	chr20:33591669-33591963(-)$1	1	4	30	23.3937
((((((((.............)))).	chr22:21348461-21348744(+)$1	1	213	239	21.2470
(((.((((...........))))...	chr16:8943582-8943836(+)$1	1	204	230	22.5658
(..(((((...........))))).)	chr7:44154406-44154648(-)$1	1	194	220	23.7065
..(((((.............))))).	chr2:64796640-64796960(+)$1	1	247	273	23.3802
..(((((............))))).)	chr3:119153572-119153880(-)$1	1	151	177	23.4170
(((((((.............))))))	chr1:19451060-19451273(-)$1	1	23	49	23.4077

#PSSM
g : 0.11	h : 0.10	: : 0.08	! : 0.08	d : 0.08	" : 0.08	c : 0.06	i : 0.06	e : 0.05	f : 0.05	b : 0.03	[ : 0.03	# : 0.03	$ : 0.01	) : 0.01	G : 0.01	& : 0.01	F : 0.01	a : 0.01	
g : 0.18	h : 0.10	f : 0.10	: : 0.08	c : 0.08	" : 0.08	e : 0.06	! : 0.06	i : 0.05	d : 0.05	b : 0.03	# : 0.01	$ : 0.01	) : 0.01	[ : 0.01	a : 0.01	
f : 0.22	g : 0.15	e : 0.13	c : 0.10	h : 0.10	i : 0.05	d : 0.05	" : 0.05	! : 0.05	[ : 0.01	# : 0.01	$ : 0.01	: : 0.01	b : 0.01	
f : 0.22	e : 0.18	g : 0.15	h : 0.10	c : 0.08	i : 0.05	" : 0.05	b : 0.05	! : 0.03	[ : 0.03	$ : 0.01	d : 0.01	
f : 0.22	e : 0.16	g : 0.15	c : 0.10	d : 0.10	h : 0.06	[ : 0.05	i : 0.05	! : 0.03	b : 0.03	" : 0.01	
f : 0.22	e : 0.16	c : 0.13	g : 0.11	[ : 0.10	d : 0.08	i : 0.05	h : 0.05	w : 0.03	b : 0.01	! : 0.01	
f : 0.18	b : 0.15	e : 0.13	c : 0.11	g : 0.08	w : 0.08	d : 0.08	i : 0.05	v : 0.03	[ : 0.03	h : 0.03	
f : 0.13	b : 0.13	v : 0.11	g : 0.08	w : 0.08	c : 0.08	d : 0.08	u : 0.08	e : 0.06	i : 0.05	a : 0.05	h : 0.01	
t : 0.49	u : 0.23	v : 0.18	w : 0.08	
t : 0.49	u : 0.23	v : 0.18	w : 0.08	
t : 0.49	u : 0.23	v : 0.18	w : 0.08	
t : 0.49	u : 0.23	v : 0.18	w : 0.08	
t : 0.49	u : 0.23	v : 0.18	w : 0.08	
t : 0.49	u : 0.23	v : 0.18	w : 0.08	
t : 0.49	u : 0.23	v : 0.18	w : 0.08	
t : 0.49	u : 0.23	v : 0.18	w : 0.08	
t : 0.49	u : 0.23	v : 0.18	w : 0.08	
t : 0.49	u : 0.23	v : 0.18	w : 0.08	
t : 0.49	u : 0.23	v : 0.18	w : 0.08	
u : 0.15	v : 0.15	b : 0.11	c : 0.10	g : 0.08	f : 0.08	d : 0.06	e : 0.06	w : 0.05	a : 0.05	i : 0.03	h : 0.03	
f : 0.20	c : 0.15	b : 0.15	e : 0.13	g : 0.10	v : 0.06	d : 0.06	] : 0.05	i : 0.03	h : 0.03	
f : 0.22	c : 0.16	e : 0.16	g : 0.11	] : 0.08	d : 0.08	i : 0.05	b : 0.05	h : 0.05	
f : 0.22	e : 0.16	g : 0.15	c : 0.08	d : 0.08	h : 0.06	i : 0.05	2 : 0.05	] : 0.03	3 : 0.03	b : 0.03	a : 0.01	
f : 0.22	e : 0.16	g : 0.15	2 : 0.08	h : 0.08	] : 0.06	c : 0.05	i : 0.05	3 : 0.05	4 : 0.03	b : 0.01	d : 0.01	
f : 0.23	g : 0.15	e : 0.10	d : 0.08	h : 0.08	c : 0.06	] : 0.06	3 : 0.06	i : 0.05	4 : 0.03	2 : 0.03	b : 0.01	
f : 0.15	g : 0.15	d : 0.13	e : 0.08	h : 0.08	c : 0.05	i : 0.05	4 : 0.05	: : 0.03	3 : 0.03	] : 0.03	a : 0.03	2 : 0.03	0 : 0.01	B : 0.01	b : 0.01	C : 0.01	

#score	1354.203318389972
#seq	59
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_CDS_m2_run2.txt

#BEAR
eeeee"""cccnnnnnccc333eeee	chr15:44085987-44086282(+)$1	295	22	48	8.7743
"ccc"""cccbblllbb]ccc333cc	chr16:3117327-3117588(+)$1	261	186	212	8.7754
dddd####ddddmmmmdddd]dddd:	chr17:62496623-62496872(-)$1	249	50	76	11.2220
ddd$$$$$ddddoooooodddd4444	chr2:148695662-148695945(-)$1	283	176	202	11.0190
b[ccc"""ddddllldddd333cccb	chr4:26431509-26431771(+)$1	262	106	132	11.5969
==bb"""eeeeennnnneeeee333b	chr4:74321309-74321518(+)$1	209	48	74	8.7889
hhhhddddddddmmmmdddd]dddd:	chr2:114476679-114476941(-)$1	262	224	250	8.2926
cc[dddd[ddddmmmmddddddddcc	chr16:28847404-28847664(+)$1	260	194	220	10.0535
eeee[ggggggglllggggggg]eee	chr4:74301916-74302147(+)$1	231	145	171	7.2824
ee]acccddddoooooodddd]ccc:	chr6:24291049-24291291(-)$1	242	89	115	9.2870
ffffff[ddddoooooodddd]ffff	chr4:166418658-166418903(+)$1	245	135	161	9.4383
iiiiiii[ddddnnnnnddddiiiii	chr4:78739996-78740349(-)$1	353	68	94	9.8995
fff$$$$$ddddoooooodddd4444	chr19:9940574-9940845(+)$1	271	63	89	10.7640
!ccc[bb[cccnnnnncccbb]ccc2	chr20:2637082-2637367(+)$1	285	96	122	7.6436
[bb[ccc[ddddmmmmdddd]ccc]b	chr12:69746941-69747182(+)$1	241	1	27	10.7579
dddd####ddddllldddd4444ddd	chr4:120221389-120221603(-)$1	214	15	41	12.0150
eeee"""eeeeellleeeee333eee	chr19:10794554-10794821(+)$1	267	26	52	10.1257
dd[ccc[ddddoooooodddd]ccc2	chr20:43031159-43031456(+)$1	297	11	37	10.4195
""bb####cccccclllccc]ccc44	chr14:97000813-97001047(+)$1	234	106	132	8.2609
$$$$ccc[ddddnnnnndddd]ccc6	chr5:42807000-42807249(-)$1	249	103	129	9.1030
hhhhhhh[ddddmmmmdddd22hhhh	chr11:17153282-17153580(-)$1	298	238	264	8.9674
:dddd!!ddddnnnnndddd22dddd	chr1:33146018-33146294(+)$1	276	103	129	9.1783
#ccc####ddddmmmmdddd22ccc2	chr13:98654732-98655036(+)$1	304	183	209	12.7879
c[eeeee[ddddmmmmdddd]eeeee	chr12:72004233-72004553(-)$1	320	52	78	10.2221
ccc!!ccc[cccmmmmcccccc]ccc	chr2:223773510-223773730(+)$1	220	167	193	8.8779
ddd$$$$$eeeeellleeeee333dd	chr4:107168340-107168629(-)$1	289	217	243	9.3980
!!a$$$$$ddddoooooodddd]a22	chr20:5159478-5159740(+)$1	262	222	248	10.5501
#ffffff[ddddmmmmdddd]fffff	chr20:57568642-57568968(+)$1	326	25	51	9.9984
ddd!!eeeeeooooooeeeee22ddd	chr10:101563802-101564104(+)$1	302	57	83	8.4615
ccc!!bb[ddddmmmmddddbbccc]	chr22:24439210-24439471(+)$1	261	200	226	10.8323
!!bb[ccc[ddddllldddd]ccc]b	chr14:24769846-24770154(+)$1	308	208	234	9.7509
eeeee"""ddddmmmmddddeeeee5	chr15:64430209-64430495(+)$1	286	206	232	10.5526
bdddd[a[ddddmmmmdddd]a]ddd	chr20:62364331-62364672(+)$1	341	250	276	11.4466
ccc!!gggggggmmmmggggggg22c	chr2:58389959-58390236(-)$1	277	176	202	7.6862
eeee####ddddooooooddddeeee	chr9:95013915-95014201(-)$1	286	154	180	10.9868
fffff!!eeeeellleeeee333fff	chr10:103557545-103557823(-)$1	278	23	49	8.9715
dd"""bb!!ddddllldddd22bb33	chr1:78425821-78426115(-)$1	294	228	254	10.3735
ddd[a[a[ddddmmmmddddaa]ddd	chr19:13054581-13054827(+)$1	246	139	165	11.9482
ffff"""ddddnnnnndddd333fff	chr4:74321268-74321481(+)$1	213	11	37	11.2463
ddd[a[a[ddddmmmmddddaa]ddd	chr19:13054527-13054781(+)$1	254	193	219	11.9482
cccbbbb[ddddmmmmdddd]bb333	chr2:242276811-242277092(+)$1	281	39	65	10.3174
!ffffff[eeeeellleeeee]ffff	chr2:70452412-70452649(-)$1	237	113	139	7.5426
ddd!!a[eeeeemmmmeeeee]a22d	chr4:95376457-95376734(+)$1	277	4	30	9.0126
ffff!!ddddoooooodddd22ffff	chr17:56082986-56083244(-)$1	258	98	124	10.1294
[cccccc[ddddlllddddccc]ccc	chr17:37009850-37010070(-)$1	220	145	171	10.7769
dddd[bb[ddddmmmmddddbb]ddd	chr4:155533582-155533791(-)$1	209	99	125	10.4591
fffff[ddddoooooodddd22ffff	chr4:74321319-74321546(+)$1	227	178	204	9.4657
a!!dddd[ddddmmmmdddd22dddd	chr8:101717138-101717361(-)$1	223	144	170	10.5842
:ccc!!a!!cccmmmmccc22a22cc	chr14:31067517-31067806(+)$1	289	86	112	8.6163
eeee####ddddnnnnndddd4444e	chr17:39846346-39846612(+)$1	266	17	43	11.7507
'ccc####cccooooooccc333ccc	chr2:170668193-170668461(+)$1	268	139	165	10.7274
eeee[ggggggglllggggggg]eee	chr4:74301910-74302116(+)$1	206	151	177	7.2824
eeee!!ddddoooooodddd888888	chr2:44184480-44184753(-)$1	273	45	71	8.4920
ddd[a[a[ddddmmmmddddaa]ddd	chr19:13054627-13054874(+)$1	247	93	119	11.9482
==bb"""eeeeennnnneeeee333b	chr4:74321281-74321495(+)$1	214	76	102	8.7889

#otherMatches

#Seq PSSM
GUGUGCCUGGAGCCAGUCCCACCACG	chr15:44085987-44086282(+)$1	295	22	48	8.7743
AGGAUCCGGCCCUUUGGUGCCAACUC	chr16:3117327-3117588(+)$1	261	186	212	8.7754
UUGGAAGAACUGCUCGCAGUACCAAA	chr17:62496623-62496872(-)$1	249	50	76	11.2220
UGUUCAAAGGAAAGCACAUUCCGUUU	chr2:148695662-148695945(-)$1	283	176	202	11.0190
GAGGGAAUGGGCCCUGUCCUUGCCCC	chr4:26431509-26431771(+)$1	262	106	132	11.5969
GACAAAACGAGUCUUUCAUUCGGUGU	chr4:74321309-74321518(+)$1	209	48	74	8.7889
CAAUACACAUUUUUAAAAAUAGUGUU	chr2:114476679-114476941(-)$1	262	224	250	8.2926
GCAGGGCUGUCCCACAGGGCGCCCGC	chr16:28847404-28847664(+)$1	260	194	220	10.0535
UAGGUGAGAUAUUUUGUGUUUUUCUU	chr4:74301916-74302147(+)$1	231	145	171	7.2824
GUGAGUUACUUUUUGACAAGUCAACG	chr6:24291049-24291291(-)$1	242	89	115	9.2870
CUAUAUAAUGUAGUAUGAUGUAAUGU	chr4:166418658-166418903(+)$1	245	135	161	9.4383
GGGGGCGGCGGGGCUGACCCGCGUCU	chr4:78739996-78740349(-)$1	353	68	94	9.8995
CAGAUGAAAUCCACGAUGGGAUGAAC	chr19:9940574-9940845(+)$1	271	63	89	10.7640
AAUCGAUUGCUUCUCUGGUAUGGGUG	chr20:2637082-2637367(+)$1	285	96	122	7.6436
AGAAAUCGUUGUCAAAACAGAGAUGU	chr12:69746941-69747182(+)$1	241	1	27	10.7579
GGGGCAAAUGGGCUUCCCAAACACUC	chr4:120221389-120221603(-)$1	214	15	41	12.0150
UUCCCUUUCCAGGUGCUGGGUAUGGA	chr19:10794554-10794821(+)$1	267	26	52	10.1257
CAUGUCCGUUUGUCUCUGAGCAGAUU	chr20:43031159-43031456(+)$1	297	11	37	10.4195
CCCUACCAAUUCACACUGUGCAAUAA	chr14:97000813-97001047(+)$1	234	106	132	8.2609
AAUCAUCAAGGAAUCUCUUCUCGAUU	chr5:42807000-42807249(-)$1	249	103	129	9.1030
UAUGUCUUAAGAUCUCUCUUCUAGAU	chr11:17153282-17153580(-)$1	298	238	264	8.9674
UUUAGGAGUUAGUCCUUGACCACUAG	chr1:33146018-33146294(+)$1	276	103	129	9.1783
AAUGAAAGGGAACAUUUUCCAGCAUC	chr13:98654732-98655036(+)$1	304	183	209	12.7879
CCUCUUUGUGCAUCACUGUGGAAAGA	chr12:72004233-72004553(-)$1	320	52	78	10.2221
AACCUGAUUCUGCAUACAGAUCUGUU	chr2:223773510-223773730(+)$1	220	167	193	8.8779
UAUUCAGUGAGGUAUCACCUUUAUAU	chr4:107168340-107168629(-)$1	289	217	243	9.3980
GACAUUAACUGUGACCAUGCAGGGGA	chr20:5159478-5159740(+)$1	262	222	248	10.5501
UUCUUCUGUAGCUUGAGUUGAAGAAG	chr20:57568642-57568968(+)$1	326	25	51	9.9984
AUGGAUGUGACCAACUUCAUGCACAU	chr10:101563802-101564104(+)$1	302	57	83	8.4615
GGACAUGUGGCCCUGAGGCUCAUCCG	chr22:24439210-24439471(+)$1	261	200	226	10.8323
AAUCAUCUGGUAAGUAUUACAAGAGG	chr14:24769846-24770154(+)$1	308	208	234	9.7509
AUUCCCACUUCUUUAGGGAAGGAGUU	chr15:64430209-64430495(+)$1	286	206	232	10.5526
GGCAGGUGGUCUCUCUGGAUGAGCUG	chr20:62364331-62364672(+)$1	341	250	276	11.4466
CAAAAUUUGAAAGAUGUUUUAGAAAU	chr2:58389959-58390236(-)$1	277	176	202	7.6862
CUGCCUUCAGCACCUACUUGCUGCAG	chr9:95013915-95014201(-)$1	286	154	180	10.9868
UACUCCUAUGUUUGGGAUAUCAAGAG	chr10:103557545-103557823(-)$1	278	23	49	8.9715
CAGGCUCCUCCUGAUCCAGGUAGAAG	chr1:78425821-78426115(-)$1	294	228	254	10.3735
GCUGUAGAGAGGCCUGCCUCCAGGGC	chr19:13054581-13054827(+)$1	246	139	165	11.9482
AUAGAACCAGUUACUUACUGCACCUA	chr4:74321268-74321481(+)$1	213	11	37	11.2463
GCUGUAGAGAGGCCUGCCUCCAGGGC	chr19:13054527-13054781(+)$1	254	193	219	11.9482
CGAGAGCGGCUUGAACAGGCGGCACA	chr2:242276811-242277092(+)$1	281	39	65	10.3174
UUAUUUUGCAGAGUGUCUCUGAAGAA	chr2:70452412-70452649(-)$1	237	113	139	7.5426
UGGUUGGCCCAGCUCCUUGGGGUUUC	chr4:95376457-95376734(+)$1	277	4	30	9.0126
AUUCUUUUCUUUGACCAGAAUUGGAU	chr17:56082986-56083244(-)$1	258	98	124	10.1294
UCCACCAUCUGUCGUGCAGUGGCUGG	chr17:37009850-37010070(-)$1	220	145	171	10.7769
UGUGUAGCAGUAAGUGUGCUCUUCAC	chr4:155533582-155533791(-)$1	209	99	125	10.4591
UUUUCCAAGUUUGCUUAUUUAUGAAA	chr4:74321319-74321546(+)$1	227	178	204	9.4657
GUUGGAGAUUGAUAAUUCAGAACUUC	chr8:101717138-101717361(-)$1	223	144	170	10.5842
aaGGUUUUUAUUUUUAGAUUCAUUCC	chr14:31067517-31067806(+)$1	289	86	112	8.6163
AUUGAGCAUCCGGAAUAUGGAGAAGU	chr17:39846346-39846612(+)$1	266	17	43	11.7507
AAAGGAAAACCGAAUUAGGUCCACUU	chr2:170668193-170668461(+)$1	268	139	165	10.7274
UAGGUGAGAUAUUUUGUGUUUUUCUU	chr4:74301910-74302116(+)$1	206	151	177	7.2824
AUACAAUUUCCAAAAUGAAAACUAAA	chr2:44184480-44184753(-)$1	273	45	71	8.4920
GCUGUAGAGAGGCCUGCCUCCAGGGC	chr19:13054627-13054874(+)$1	247	93	119	11.9482
GACAAAACGAGUCUUUCAUUCGGUGU	chr4:74321281-74321495(+)$1	214	76	102	8.7889

#DB
(((((...(((.....)))...))))	chr15:44085987-44086282(+)$1	1	22	48	8.7743
.(((...(((((...)).)))...))	chr16:3117327-3117588(+)$1	1	186	212	8.7754
((((....((((....)))).)))).	chr17:62496623-62496872(-)$1	1	50	76	11.2220
(((.....((((......))))....	chr2:148695662-148695945(-)$1	1	176	202	11.0190
(.(((...((((...))))...))))	chr4:26431509-26431771(+)$1	1	106	132	11.5969
((((...(((((.....)))))...)	chr4:74321309-74321518(+)$1	1	48	74	8.7889
))))((((((((....)))).)))).	chr2:114476679-114476941(-)$1	1	224	250	8.2926
((.((((.((((....))))))))))	chr16:28847404-28847664(+)$1	1	194	220	10.0535
((((.(((((((...))))))).)))	chr4:74301916-74302147(+)$1	1	145	171	7.2824
)).)(((((((......)))).))).	chr6:24291049-24291291(-)$1	1	89	115	9.2870
((((((.((((......)))).))))	chr4:166418658-166418903(+)$1	1	135	161	9.4383
(((((((.((((.....)))))))))	chr4:78739996-78740349(-)$1	1	68	94	9.8995
(((.....((((......))))....	chr19:9940574-9940845(+)$1	1	63	89	10.7640
.(((.((.(((.....))))).))).	chr20:2637082-2637367(+)$1	1	96	122	7.6436
.((.(((.((((....)))).))).)	chr12:69746941-69747182(+)$1	1	1	27	10.7579
((((....((((...))))....)))	chr4:120221389-120221603(-)$1	1	15	41	12.0150
((((...(((((...)))))...)))	chr19:10794554-10794821(+)$1	1	26	52	10.1257
((.(((.((((......)))).))).	chr20:43031159-43031456(+)$1	1	11	37	10.4195
..((....((((((...))).)))..	chr14:97000813-97001047(+)$1	1	106	132	8.2609
....(((.((((.....)))).))).	chr5:42807000-42807249(-)$1	1	103	129	9.1030
(((((((.((((....))))..))))	chr11:17153282-17153580(-)$1	1	238	264	8.9674
.((((..((((.....))))..))))	chr1:33146018-33146294(+)$1	1	103	129	9.1783
.(((....((((....))))..))).	chr13:98654732-98655036(+)$1	1	183	209	12.7879
(.(((((.((((....)))).)))))	chr12:72004233-72004553(-)$1	1	52	78	10.2221
(((..(((.(((....)))))).)))	chr2:223773510-223773730(+)$1	1	167	193	8.8779
(((.....(((((...)))))...))	chr4:107168340-107168629(-)$1	1	217	243	9.3980
..(.....((((......)))).)..	chr20:5159478-5159740(+)$1	1	222	248	10.5501
.((((((.((((....)))).)))))	chr20:57568642-57568968(+)$1	1	25	51	9.9984
(((..(((((......)))))..)))	chr10:101563802-101564104(+)$1	1	57	83	8.4615
(((..((.((((....))))))))).	chr22:24439210-24439471(+)$1	1	200	226	10.8323
..((.(((.((((...)))).))).)	chr14:24769846-24770154(+)$1	1	208	234	9.7509
(((((...((((....))))))))).	chr15:64430209-64430495(+)$1	1	206	232	10.5526
(((((.(.((((....)))).).)))	chr20:62364331-62364672(+)$1	1	250	276	11.4466
(((..(((((((....)))))))..)	chr2:58389959-58390236(-)$1	1	176	202	7.6862
((((....((((......))))))))	chr9:95013915-95014201(-)$1	1	154	180	10.9868
(((((..(((((...)))))...)))	chr10:103557545-103557823(-)$1	1	23	49	8.9715
((...((..((((...))))..))..	chr1:78425821-78426115(-)$1	1	228	254	10.3735
(((.(.(.((((....)))))).)))	chr19:13054581-13054827(+)$1	1	139	165	11.9482
((((...((((.....))))...)))	chr4:74321268-74321481(+)$1	1	11	37	11.2463
(((.(.(.((((....)))))).)))	chr19:13054527-13054781(+)$1	1	193	219	11.9482
(((((((.((((....)))).))...	chr2:242276811-242277092(+)$1	1	39	65	10.3174
.((((((.(((((...))))).))))	chr2:70452412-70452649(-)$1	1	113	139	7.5426
(((..(.(((((....))))).)..)	chr4:95376457-95376734(+)$1	1	4	30	9.0126
((((..((((......))))..))))	chr17:56082986-56083244(-)$1	1	98	124	10.1294
.((((((.((((...))))))).)))	chr17:37009850-37010070(-)$1	1	145	171	10.7769
((((.((.((((....)))))).)))	chr4:155533582-155533791(-)$1	1	99	125	10.4591
(((((.((((......))))..))))	chr4:74321319-74321546(+)$1	1	178	204	9.4657
(..((((.((((....))))..))))	chr8:101717138-101717361(-)$1	1	144	170	10.5842
.(((..(..(((....)))..)..))	chr14:31067517-31067806(+)$1	1	86	112	8.6163
((((....((((.....))))....)	chr17:39846346-39846612(+)$1	1	17	43	11.7507
.(((....(((......)))...)))	chr2:170668193-170668461(+)$1	1	139	165	10.7274
((((.(((((((...))))))).)))	chr4:74301910-74302116(+)$1	1	151	177	7.2824
((((..((((......))))......	chr2:44184480-44184753(-)$1	1	45	71	8.4920
(((.(.(.((((....)))))).)))	chr19:13054627-13054874(+)$1	1	93	119	11.9482
((((...(((((.....)))))...)	chr4:74321281-74321495(+)$1	1	76	102	8.7889

#PSSM
d : 0.21	e : 0.16	c : 0.10	f : 0.10	! : 0.07	" : 0.03	b : 0.03	= : 0.03	h : 0.03	[ : 0.03	: : 0.03	# : 0.03	i : 0.01	$ : 0.01	a : 0.01	' : 0.01	
d : 0.25	c : 0.20	e : 0.16	f : 0.14	! : 0.05	[ : 0.03	= : 0.03	h : 0.03	i : 0.01	b : 0.01	" : 0.01	$ : 0.01	
d : 0.21	c : 0.20	e : 0.16	f : 0.14	b : 0.09	h : 0.03	[ : 0.03	] : 0.01	i : 0.01	$ : 0.01	a : 0.01	" : 0.01	! : 0.01	
e : 0.16	c : 0.14	d : 0.12	f : 0.12	$ : 0.09	b : 0.09	! : 0.09	[ : 0.07	h : 0.03	a : 0.01	i : 0.01	" : 0.01	
! : 0.14	# : 0.12	" : 0.10	c : 0.10	d : 0.09	[ : 0.09	f : 0.09	$ : 0.07	e : 0.05	a : 0.05	i : 0.01	h : 0.01	b : 0.01	
" : 0.14	# : 0.12	c : 0.12	b : 0.09	! : 0.09	[ : 0.09	$ : 0.07	d : 0.05	g : 0.05	f : 0.05	e : 0.03	i : 0.01	h : 0.01	a : 0.01	
" : 0.14	# : 0.12	d : 0.10	c : 0.10	b : 0.09	a : 0.09	$ : 0.07	g : 0.05	[ : 0.05	! : 0.03	e : 0.03	f : 0.03	i : 0.01	h : 0.01	
[ : 0.32	d : 0.16	# : 0.12	e : 0.10	$ : 0.07	" : 0.05	c : 0.05	g : 0.05	! : 0.03	
d : 0.63	e : 0.14	c : 0.09	g : 0.05	[ : 0.03	! : 0.03	
d : 0.67	e : 0.14	c : 0.12	g : 0.05	
d : 0.61	e : 0.12	c : 0.10	o : 0.07	g : 0.05	b : 0.01	
d : 0.52	o : 0.14	e : 0.12	n : 0.07	g : 0.05	c : 0.05	b : 0.01	
m : 0.38	o : 0.21	n : 0.16	l : 0.14	e : 0.03	d : 0.03	c : 0.01	
m : 0.38	l : 0.21	o : 0.21	n : 0.16	c : 0.01	
m : 0.38	l : 0.23	o : 0.21	n : 0.16	
m : 0.38	o : 0.21	n : 0.16	l : 0.09	d : 0.05	g : 0.03	e : 0.03	b : 0.01	
d : 0.49	o : 0.14	e : 0.10	n : 0.09	c : 0.07	g : 0.05	b : 0.01	l : 0.01	
d : 0.60	e : 0.14	c : 0.10	o : 0.07	g : 0.05	] : 0.01	
d : 0.67	e : 0.14	c : 0.12	g : 0.05	
d : 0.61	e : 0.14	c : 0.09	g : 0.05	3 : 0.03	b : 0.01	4 : 0.01	2 : 0.01	
d : 0.20	] : 0.16	2 : 0.14	e : 0.12	3 : 0.10	c : 0.05	g : 0.05	b : 0.05	a : 0.05	4 : 0.01	8 : 0.01	
3 : 0.14	2 : 0.14	d : 0.12	] : 0.12	c : 0.09	a : 0.09	e : 0.07	g : 0.05	b : 0.05	4 : 0.03	i : 0.01	f : 0.01	8 : 0.01	
c : 0.18	] : 0.18	3 : 0.14	d : 0.09	f : 0.09	e : 0.07	4 : 0.07	2 : 0.03	b : 0.03	i : 0.01	h : 0.01	g : 0.01	a : 0.01	8 : 0.01	
c : 0.23	d : 0.21	e : 0.12	f : 0.12	3 : 0.09	4 : 0.05	2 : 0.05	i : 0.01	h : 0.01	a : 0.01	b : 0.01	8 : 0.01	
c : 0.23	d : 0.21	e : 0.12	f : 0.12	4 : 0.07	3 : 0.07	2 : 0.05	] : 0.03	i : 0.01	h : 0.01	8 : 0.01	
d : 0.20	e : 0.12	c : 0.12	f : 0.12	b : 0.09	2 : 0.07	: : 0.05	4 : 0.05	3 : 0.03	i : 0.01	6 : 0.01	h : 0.01	] : 0.01	5 : 0.01	8 : 0.01	

#score	543.6011369803422
#seq	55
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_CDS_m2_run1.txt

#BEAR
ggggeeeee"""bblllbb333eeeee]gg	chr6:31696774-31697042(-)$1	268	147	177	11.7362
###bb[dddd!!bbmmmmbb22ddddbbdd	chr22:32340570-32340859(+)$1	289	65	95	13.3761
ggggggg[bb!!bbmmmmbb22bb]ggggg	chr6:27860789-27861032(-)$1	243	203	233	14.7811
eee[a!!ccc!!bbmmmmbb22ccc22a]e	chr13:113863753-113864052(+)$1	299	10	40	15.3209
####eeeee!!cccmmmmccc22eeeeedd	chrX:48652237-48652497(+)$1	260	168	198	12.2068
b[bb!!ccc"""bbmmmmbb]ccc22bb44	chr7:150935205-150935523(+)$1	318	47	77	14.7808
!!bb[ccc####bbmmmmbb333ccc]bb2	chr19:39340325-39340646(-)$1	321	118	148	15.6279
fbb####a[bb[bbmmmmbb]bbabb]fff	chr19:5903577-5903885(-)$1	308	79	109	12.2883
####ggggggg[bbmmmmbb]gggggggbb	chr5:177019114-177019368(+)$1	254	17	47	14.8886
ddccc[ccc"""bbmmmmbb]ccc]ccc]d	chr9:101558654-101558911(-)$1	257	98	128	14.9982
===========[bbmmmmbb]=========	chr11:637279-637579(+)$1	300	133	163	16.5300
iiiiidddd!!cccmmmmccc22dddd22i	chr22:20073781-20074013(+)$1	232	122	152	11.6073
hhhhheeeee!!bbmmmmbb22eeeee]hh	chr1:193028705-193028984(+)$1	279	74	104	13.2203
iiiiiiiii"""bbmmmmbb333iiiiiii	chr6:32122346-32122616(+)$1	270	186	216	16.7953
eee[ccc[ccc[ccclllccc]ccc]ccc3	chr11:118272258-118272534(+)$1	276	62	92	10.5189
eee[==========mmmm==========22	chr3:51422723-51422966(+)$1	243	69	99	13.3335
ccc####ccc!!bbmmmmbbccccccccc]	chr11:58346657-58346921(+)$1	264	221	251	14.8530
[dddd[eeeeecccmmmmccc333eeeee]	chr22:20073442-20073675(+)$1	233	91	121	11.4098
ccc!!cccccc[bbmmmmbbccc22ccc33	chr6:26104287-26104503(+)$1	216	123	153	14.2431
ff[ccc[bb"""bbmmmmbb333bb]ccc2	chr9:140348891-140349150(-)$1	259	69	99	14.9171
[ccc[iiiiiiiiimmmmiiiiiiiii333	chr9:124921805-124922105(-)$1	300	12	42	13.0710
::ggggggg[a[bbmmmmbb]a]ggggggg	chr2:132249717-132249993(-)$1	276	12	42	13.3807
c[bb[ffffff[bbmmmmbb22ffffff]b	chr3:45730838-45731090(+)$1	252	183	213	13.7226
beeeee!!a!!cccmmmmccc22aeeeeeg	chr20:57582066-57582331(-)$1	265	144	174	11.8439
[bb[ccc[bb!!bbmmmmbb22bb]ccc]b	chr19:47634130-47634380(+)$1	250	210	240	14.1081
:iiiiiiiii!!bbmmmmbb22iiiiiiii	chr1:153642234-153642455(-)$1	221	13	43	15.3942
[dddd[ccc!!cccmmmmccc22cccdddd	chr3:49412838-49413112(-)$1	274	192	222	12.0991
[dddd[bbccc[bbmmmmbb]ccc22bbdd	chr17:76113592-76113869(-)$1	277	210	240	12.8488
ffbbeeeee[a[bbmmmmbb]aeeeee]bb	chr18:51750528-51750846(-)$1	318	204	234	13.2356
ee[a[ccc[bb[bblllbbbb]ccc]a]ee	chr1:116915775-116916028(+)$1	253	9	39	11.1462
bb[==========oooooo==========2	chr22:24236493-24236857(+)$1	364	256	286	10.5664
b]bbddddccc[bbmmmmbb]ccc]ddddB	chr16:2301216-2301568(-)$1	352	178	208	11.7136
""eeeeebb!!cccmmmmccc22bb4444e	chr16:18812655-18812923(-)$1	268	152	182	11.5424
===========[bbmmmmbb]=========	chr6:27775871-27776130(+)$1	259	214	244	16.5300
dd"""ccc####bbmmmmbb4444ccc]dd	chr16:66785293-66785574(-)$1	281	157	187	14.8064
iiiiiiia!!bboooooobb22a]iiiiii	chr12:110905860-110906138(-)$1	278	161	191	10.9550
c[a!!iiiiiiiiimmmmiiiiiiiii]a]	chr5:85913729-85914049(+)$1	320	73	103	13.0205
c$$$$$eeeee[bbmmmmbb]eeeee22cc	chr6:32157447-32157877(-)$1	430	286	316	12.5275
fff####dddd[bbmmmmbb]dddd22fff	chr3:20082005-20082286(+)$1	281	117	147	12.5557
a!!bb[ffffffbbmmmmbb]ffffffbb2	chr14:65253102-65253374(-)$1	272	84	114	12.5736
ffffff!!ccccccmmmmccc]ccc22fff	chr7:150934503-150934740(+)$1	237	58	88	11.0596
!!ggggggg[a[bbmmmmbba]ggggggg3	chr2:178077421-178077628(+)$1	207	142	172	15.6712
iiiiffffff!!bbmmmmbb22ffffffEE	chr5:112196917-112197211(+)$1	294	237	267	12.2802
eeeee[ccc!!cccmmmmccc]ccc]eeee	chr7:29923583-29923895(+)$1	312	261	291	12.3167
cccffffff!!cccmmmmccc22ffffff2	chr12:49663146-49663382(+)$1	236	179	209	11.7937
d####a!!ccc[bbmmmmbb]ccc22a333	chr16:18810036-18810258(-)$1	222	141	171	15.2103
ffccc!!gggggggmmmmggggggg22ccc	chr7:5632350-5632686(+)$1	336	32	62	11.0904
e[bb!!ccc!!cccmmmmccc22ccc]bb]	chr8:144102199-144102474(+)$1	275	5	35	12.9586
dd=============lll============	chr19:2270509-2270753(+)$1	244	196	226	11.5946
###iiiiiiiii[ammmma]iiiiiiiii6	chr3:10362627-10362887(-)$1	260	182	212	12.2979
a!!bbggggggg[bblllbb]ggggggg33	chr16:30205897-30206172(+)$1	275	107	137	11.5836
dddd!!eeeeecccmmmmccc]eeeee]dd	chr1:207494946-207495229(+)$1	283	53	83	10.7027
eeeeffffff!!bbmmmmbb22ffffff22	chr4:103790084-103790436(+)$1	352	66	96	13.8326
!!eeeee[ccc[bbmmmmbb]ccc]eeeee	chr7:44621560-44621877(-)$1	317	191	221	14.1771

#otherMatches

#Seq PSSM
UGAUCCGGGGAGUCCCAGAGAGCCUGGCGU	chr6:31696774-31697042(-)$1	268	147	177	11.7362
CAGCGACCGGGGAGCGGACUGACCGGCGGG	chr22:32340570-32340859(+)$1	289	65	95	13.3761
CCUGCUCCGCAAGGGCAACUACGCUGAGCG	chr6:27860789-27861032(-)$1	243	203	233	14.7811
CGCGUUCCUAAGCCCUCAGGAGUAGCCGGG	chr13:113863753-113864052(+)$1	299	10	40	15.3209
UACUGCCCAUCUCUACCAAGGCCUGGGCCC	chrX:48652237-48652497(+)$1	260	168	198	12.2068
AAGUCCUCAACCGCUGUCGCAUGAAUGCCA	chr7:150935205-150935523(+)$1	318	47	77	14.7808
AGGCGGUCGGGAGCGAUGGUGAAGAUggcg	chr19:39340325-39340646(-)$1	321	118	148	15.6279
CCGAGAAGUCUCGCGAUAGCCAGCCGCGGC	chr19:5903577-5903885(-)$1	308	79	109	12.2883
GAACUCGCGGUCCCGGCAGGCACCGCGGCG	chr5:177019114-177019368(+)$1	254	17	47	14.8886
cggcggggcggacgggagcgggccgcgcgu	chr9:101558654-101558911(-)$1	257	98	128	14.9982
GCGCUGGUGGGGGGCGUGCUGCUCAUCGGC	chr11:637279-637579(+)$1	300	133	163	16.5300
GCAGAGCGCGACGUGCGGGCGGAGUGCGGU	chr22:20073781-20074013(+)$1	232	122	152	11.6073
AGUGGGGCUGUUGCUGUUGCUGUGGCUGUC	chr1:193028705-193028984(+)$1	279	74	104	13.2203
CCUGCUGGAAUACAUCAAUGAGGUCUGGCA	chr6:32122346-32122616(+)$1	270	186	216	16.7953
CCUUCCGGCGGGUGACAUUCAGCCGGCGGU	chr11:118272258-118272534(+)$1	276	62	92	10.5189
CGCAGGGGCUGGCGGUGGCGCUGGCUCUGA	chr3:51422723-51422966(+)$1	243	69	99	13.3335
CAGGGACCACUAGCAGCCGCGUGCUGAGGG	chr11:58346657-58346921(+)$1	264	221	251	14.8530
AGAAGCGGUGAUGGAGAGCCGAGCUCGCCC	chr22:20073442-20073675(+)$1	233	91	121	11.4098
GCAAAACUGUCACAGCCAUGGAUGUAGUAU	chr6:26104287-26104503(+)$1	216	123	153	14.2431
GCUGUCGCGGGAAGAGCACUGGGUGGGAUU	chr9:140348891-140349150(-)$1	259	69	99	14.9171
GGCAGGGCAAUACGCCUGCGUGUUGCCGGA	chr9:124921805-124922105(-)$1	300	12	42	13.0710
gggcggggcgcACCUUUCGGCGGGCCUCGC	chr2:132249717-132249993(-)$1	276	12	42	13.3807
GCGGGCGGGGCGGCAGGUGCGGGCCCUGGC	chr3:45730838-45731090(+)$1	252	183	213	13.7226
ggccauggcgaggcgcgggccaggguggcg	chr20:57582066-57582331(-)$1	265	144	174	11.8439
GGCGUUUGCGGCCCGGAAGGAGCGGGAAGG	chr19:47634130-47634380(+)$1	250	210	240	14.1081
CUGACAUGUUUUCAAAAUUGUUGGCGUGUU	chr1:153642234-153642455(-)$1	221	13	43	15.3942
GUGCCCACAGUGUUUGAGAACUAUGUGGCA	chr3:49412838-49413112(-)$1	274	192	222	12.0991
GUGGGUGCGCCACCUGGAGGCGGCAGGCCC	chr17:76113592-76113869(-)$1	277	210	240	12.8488
UCCCCCGAGUggcggcagcggccuuggcgg	chr18:51750528-51750846(-)$1	318	204	234	13.2356
CGGUAACGGUGACGUUUCGCGGCGUGGGCG	chr1:116915775-116916028(+)$1	253	9	39	11.1462
CCACCGGCAAGCCCCCCCAGGUUUGCCGGG	chr22:24236493-24236857(+)$1	364	256	286	10.5664
ggcggccggcggcggagacggcgcgcggcg	chr16:2301216-2301568(-)$1	352	178	208	11.7136
UCGCAGCACCAACCUGCUGGUGAGUCCUGG	chr16:18812655-18812923(-)$1	268	152	182	11.5424
CCUGCUCCGCAAAGGCAACUAUGCGGAGCG	chr6:27775871-27776130(+)$1	259	214	244	16.5300
CAGUGAGGAGGAGGAAGGCCAGAGCCUAUG	chr16:66785293-66785574(-)$1	281	157	187	14.8064
CCGCGGGCAGCGGGAAGGUGAGGAUCUGCG	chr12:110905860-110906138(-)$1	278	161	191	10.9550
GUCUUGGUGAGGUGCCGCCAUUUCAUCUGU	chr5:85913729-85914049(+)$1	320	73	103	13.0205
CGGAGACCCCGGUGGGGGUAGCGGGGGGGU	chr6:32157447-32157877(-)$1	430	286	316	12.5275
UGCGGUCCGGCGACGGCAGUGGCUGCAGCG	chr3:20082005-20082286(+)$1	281	117	147	12.5557
GACGGACCCAGAGUAUCUGCUUCUGGGCCA	chr14:65253102-65253374(-)$1	272	84	114	12.5736
GUGCUGGGCUGGGACUACUUCACAGAGCAG	chr7:150934503-150934740(+)$1	237	58	88	11.0596
GACUCCGGCCGUCGCCGUCGCCGCCGGGGG	chr2:178077421-178077628(+)$1	207	142	172	15.6712
UGCUGUGGUGCUGCAGGUGCUACACCGCGC	chr5:112196917-112197211(+)$1	294	237	267	12.2802
CAAGGCAGUGAAGCCUCAGCUGGCUCCCUU	chr7:29923583-29923895(+)$1	312	261	291	12.3167
CACGGCAUCCAGCCCGAUGGCCAGAUGCCA	chr12:49663146-49663382(+)$1	236	179	209	11.7937
UGGGGAGAAGUGAUGCUGAUGGCUGAUAAA	chr16:18810036-18810258(-)$1	222	141	171	15.2103
GUGGCCUGGUGGCGCUGACGUCACCUCGCC	chr7:5632350-5632686(+)$1	336	32	62	11.0904
CUCUGCUGUCUGUGUCCUCAUCUGCAAAGU	chr8:144102199-144102474(+)$1	275	5	35	12.9586
UUGGGCCGCGGUGCUGGCGGUGCCGCGGUU	chr19:2270509-2270753(+)$1	244	196	226	11.5946
AGGGUGAAGGCCACGGUCGCGGCCUUCACG	chr3:10362627-10362887(-)$1	260	182	212	12.2979
GGACCCGCGGCUGAGGCGCUGGGCUGCGAC	chr16:30205897-30206172(+)$1	275	107	137	11.5836
GGUAUUGCGGAGCCACGAGGCUUCUGCUUA	chr1:207494946-207495229(+)$1	283	53	83	10.7027
ugcccgccggccgcUUCCGCUCCCGGCGCA	chr4:103790084-103790436(+)$1	352	66	96	13.8326
CUGUUUCAUCGAGGAAAUCCCCGACGAGAC	chr7:44621560-44621877(-)$1	317	191	221	14.1771

#DB
(((((((((...((...))...))))).))	chr6:31696774-31697042(-)$1	1	147	177	11.7362
...((.((((..((....))..))))))))	chr22:32340570-32340859(+)$1	1	65	95	13.3761
(((((((.((..((....))..)).)))))	chr6:27860789-27861032(-)$1	1	203	233	14.7811
(((.(..(((..((....))..)))..).)	chr13:113863753-113864052(+)$1	1	10	40	15.3209
....(((((..(((....)))..)))))))	chrX:48652237-48652497(+)$1	1	168	198	12.2068
(.((..(((...((....)).)))..))..	chr7:150935205-150935523(+)$1	1	47	77	14.7808
..((.(((....((....))...))).)).	chr19:39340325-39340646(-)$1	1	118	148	15.6279
(((....(.((.((....)).))))).)))	chr19:5903577-5903885(-)$1	1	79	109	12.2883
....(((((((.((....)).)))))))))	chr5:177019114-177019368(+)$1	1	17	47	14.8886
(((((.(((...((....)).))).))).)	chr9:101558654-101558911(-)$1	1	98	128	14.9982
(((((((((((.((....)).)))))))))	chr11:637279-637579(+)$1	1	133	163	16.5300
(((((((((..(((....)))..))))..)	chr22:20073781-20074013(+)$1	1	122	152	11.6073
((((((((((..((....))..))))).))	chr1:193028705-193028984(+)$1	1	74	104	13.2203
(((((((((...((....))...)))))))	chr6:32122346-32122616(+)$1	1	186	216	16.7953
(((.(((.(((.(((...))).))).))).	chr11:118272258-118272534(+)$1	1	62	92	10.5189
(((.((((((((((....))))))))))..	chr3:51422723-51422966(+)$1	1	69	99	13.3335
(((....(((..((....))))))))))).	chr11:58346657-58346921(+)$1	1	221	251	14.8530
.((((.((((((((....)))...))))).	chr22:20073442-20073675(+)$1	1	91	121	11.4098
(((..((((((.((....)))))..)))..	chr6:26104287-26104503(+)$1	1	123	153	14.2431
((.(((.((...((....))...)).))).	chr9:140348891-140349150(-)$1	1	69	99	14.9171
.(((.(((((((((....)))))))))...	chr9:124921805-124922105(-)$1	1	12	42	13.0710
..(((((((.(.((....)).).)))))))	chr2:132249717-132249993(-)$1	1	12	42	13.3807
(.((.((((((.((....))..)))))).)	chr3:45730838-45731090(+)$1	1	183	213	13.7226
)(((((..(..(((....)))..))))))(	chr20:57582066-57582331(-)$1	1	144	174	11.8439
.((.(((.((..((....))..)).))).)	chr19:47634130-47634380(+)$1	1	210	240	14.1081
.(((((((((..((....))..))))))))	chr1:153642234-153642455(-)$1	1	13	43	15.3942
.((((.(((..(((....)))..)))))))	chr3:49412838-49413112(-)$1	1	192	222	12.0991
.((((.(((((.((....)).)))..))))	chr17:76113592-76113869(-)$1	1	210	240	12.8488
(((((((((.(.((....)).)))))).))	chr18:51750528-51750846(-)$1	1	204	234	13.2356
((.(.(((.((.((...)))).))).).))	chr1:116915775-116916028(+)$1	1	9	39	11.1462
((.((((((((((......)))))))))).	chr22:24236493-24236857(+)$1	1	256	286	10.5664
).))(((((((.((....)).))).)))))	chr16:2301216-2301568(-)$1	1	178	208	11.7136
..(((((((..(((....)))..))....)	chr16:18812655-18812923(-)$1	1	152	182	11.5424
(((((((((((.((....)).)))))))))	chr6:27775871-27776130(+)$1	1	214	244	16.5300
((...(((....((....))....))).))	chr16:66785293-66785574(-)$1	1	157	187	14.8064
((((((((..((......))..).))))))	chr12:110905860-110906138(-)$1	1	161	191	10.9550
(.(..(((((((((....))))))))).).	chr5:85913729-85914049(+)$1	1	73	103	13.0205
(.....(((((.((....)).)))))..))	chr6:32157447-32157877(-)$1	1	286	316	12.5275
(((....((((.((....)).))))..)))	chr3:20082005-20082286(+)$1	1	117	147	12.5557
(..((.((((((((....)).)))))))).	chr14:65253102-65253374(-)$1	1	84	114	12.5736
((((((..((((((....))).)))..)))	chr7:150934503-150934740(+)$1	1	58	88	11.0596
..(((((((.(.((....))).))))))).	chr2:178077421-178077628(+)$1	1	142	172	15.6712
))))((((((..((....))..))))))))	chr5:112196917-112197211(+)$1	1	237	267	12.2802
(((((.(((..(((....))).))).))))	chr7:29923583-29923895(+)$1	1	261	291	12.3167
(((((((((..(((....)))..)))))).	chr12:49663146-49663382(+)$1	1	179	209	11.7937
(....(..(((.((....)).)))..)...	chr16:18810036-18810258(-)$1	1	141	171	15.2103
(((((..(((((((....)))))))..)))	chr7:5632350-5632686(+)$1	1	32	62	11.0904
(.((..(((..(((....)))..))).)).	chr8:144102199-144102474(+)$1	1	5	35	12.9586
))(((((((((((((...))))))))))))	chr19:2270509-2270753(+)$1	1	196	226	11.5946
...(((((((((.(....).))))))))).	chr3:10362627-10362887(-)$1	1	182	212	12.2979
(..(((((((((.((...)).)))))))..	chr16:30205897-30206172(+)$1	1	107	137	11.5836
((((..((((((((....))).))))).))	chr1:207494946-207495229(+)$1	1	53	83	10.7027
((((((((((..((....))..))))))..	chr4:103790084-103790436(+)$1	1	66	96	13.8326
..(((((.(((.((....)).))).)))))	chr7:44621560-44621877(-)$1	1	191	221	14.1771

#PSSM
e : 0.12	f : 0.11	c : 0.11	d : 0.09	[ : 0.09	# : 0.07	b : 0.07	i : 0.07	! : 0.05	g : 0.03	= : 0.03	: : 0.03	a : 0.03	h : 0.01	" : 0.01	
e : 0.12	d : 0.12	# : 0.09	! : 0.09	i : 0.09	f : 0.09	[ : 0.07	c : 0.07	b : 0.05	g : 0.03	= : 0.03	h : 0.01	: : 0.01	] : 0.01	" : 0.01	$ : 0.01	
e : 0.14	b : 0.14	c : 0.11	# : 0.09	i : 0.09	g : 0.07	d : 0.07	= : 0.05	[ : 0.05	f : 0.03	! : 0.03	h : 0.01	" : 0.01	a : 0.01	$ : 0.01	
b : 0.16	# : 0.11	i : 0.11	e : 0.09	g : 0.07	[ : 0.07	c : 0.07	= : 0.07	d : 0.07	! : 0.03	f : 0.03	h : 0.01	a : 0.01	" : 0.01	$ : 0.01	
e : 0.12	! : 0.09	c : 0.09	= : 0.09	i : 0.09	g : 0.07	[ : 0.07	# : 0.07	d : 0.07	f : 0.07	b : 0.05	a : 0.01	h : 0.01	" : 0.01	$ : 0.01	
e : 0.12	[ : 0.12	c : 0.12	i : 0.11	g : 0.09	! : 0.09	= : 0.09	f : 0.09	# : 0.05	d : 0.03	$ : 0.01	a : 0.01	
c : 0.20	e : 0.16	i : 0.11	g : 0.09	! : 0.09	= : 0.09	f : 0.09	d : 0.05	# : 0.05	[ : 0.01	b : 0.01	
c : 0.20	e : 0.12	g : 0.09	= : 0.09	i : 0.09	f : 0.09	d : 0.07	[ : 0.07	b : 0.05	! : 0.05	a : 0.03	
c : 0.25	e : 0.12	g : 0.09	= : 0.09	i : 0.09	f : 0.09	b : 0.07	d : 0.05	# : 0.03	[ : 0.03	a : 0.01	! : 0.01	
c : 0.16	! : 0.16	" : 0.09	= : 0.09	b : 0.07	e : 0.07	i : 0.07	f : 0.07	g : 0.05	[ : 0.05	d : 0.03	# : 0.03	
! : 0.31	c : 0.12	" : 0.09	= : 0.09	b : 0.05	g : 0.05	e : 0.05	i : 0.05	a : 0.05	# : 0.03	f : 0.03	d : 0.01	
[ : 0.31	c : 0.20	! : 0.16	" : 0.09	= : 0.05	i : 0.05	# : 0.03	g : 0.03	b : 0.01	f : 0.01	
b : 0.61	c : 0.22	= : 0.05	i : 0.03	[ : 0.03	o : 0.01	g : 0.01	
b : 0.62	c : 0.22	= : 0.03	i : 0.03	o : 0.03	g : 0.01	a : 0.01	
m : 0.87	l : 0.03	o : 0.03	c : 0.01	= : 0.01	b : 0.01	
m : 0.87	l : 0.09	o : 0.03	
m : 0.87	l : 0.09	o : 0.03	
m : 0.87	l : 0.05	b : 0.03	o : 0.03	
b : 0.64	c : 0.22	= : 0.03	i : 0.03	o : 0.01	g : 0.01	a : 0.01	
b : 0.62	c : 0.22	= : 0.05	i : 0.03	3 : 0.01	g : 0.01	] : 0.01	
] : 0.29	c : 0.25	2 : 0.18	3 : 0.07	= : 0.05	i : 0.05	b : 0.01	4 : 0.01	a : 0.01	g : 0.01	
2 : 0.31	c : 0.14	] : 0.11	3 : 0.09	= : 0.09	g : 0.05	i : 0.05	a : 0.03	b : 0.01	4 : 0.01	e : 0.01	d : 0.01	f : 0.01	
c : 0.24	2 : 0.12	e : 0.09	= : 0.09	3 : 0.07	g : 0.07	i : 0.07	f : 0.07	b : 0.05	d : 0.03	] : 0.01	4 : 0.01	a : 0.01	
c : 0.27	e : 0.11	g : 0.09	= : 0.09	i : 0.09	f : 0.09	b : 0.07	d : 0.05	a : 0.03	3 : 0.01	2 : 0.01	4 : 0.01	] : 0.01	
c : 0.18	e : 0.14	i : 0.11	] : 0.09	g : 0.09	= : 0.09	f : 0.09	2 : 0.07	d : 0.05	b : 0.05	
e : 0.16	c : 0.14	2 : 0.12	i : 0.11	g : 0.09	= : 0.09	f : 0.09	] : 0.07	d : 0.05	b : 0.01	4 : 0.01	
e : 0.16	c : 0.12	i : 0.11	g : 0.09	2 : 0.09	= : 0.09	f : 0.09	b : 0.05	] : 0.05	d : 0.05	a : 0.03	4 : 0.01	
] : 0.12	f : 0.12	c : 0.12	b : 0.11	g : 0.09	e : 0.09	= : 0.09	i : 0.07	2 : 0.03	3 : 0.03	d : 0.03	a : 0.01	4 : 0.01	
d : 0.12	b : 0.09	c : 0.09	e : 0.09	g : 0.07	] : 0.07	f : 0.07	= : 0.07	i : 0.07	3 : 0.07	2 : 0.05	4 : 0.03	h : 0.01	a : 0.01	E : 0.01	
d : 0.12	2 : 0.12	3 : 0.11	e : 0.09	g : 0.07	b : 0.07	i : 0.07	] : 0.07	f : 0.05	= : 0.05	c : 0.03	4 : 0.01	h : 0.01	B : 0.01	E : 0.01	6 : 0.01	

#score	711.6462800692331
#seq	54
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_CDS_m2_run2.txt

#BEAR
b:EEEEE}BBFFFFFF}CCC}BB:	chr22:36682655-36682891(-)$1	236	181	205	10.2721
FFFFFFYYA}BB~~~~DDDD}DDD	chr13:107220115-107220391(-)$1	276	100	124	12.5901
DDD~~~~EEEEE}A}EEEEE}CCC	chr8:98787972-98788273(+)$1	301	125	149	14.0986
GGG}AYYFFFFFF~~~~FFFFFF:	chr2:232577413-232577622(+)$1	209	185	209	10.4197
:::DDDDYYDDDD}EEEEECCCZZ	chr1:19433274-19433558(-)$1	284	243	267	11.8494
}EEEEE}FFFFFFYYA}CCC____	chr9:128000817-128001117(-)$1	300	262	286	12.3041
:DDDD~~~~CCC}BB}DDDDZZZC	chr11:118919429-118919699(-)$1	270	206	230	11.3878
A}EEEEEYYDDDDCCCCCC}CCC}	chr1:156105622-156105905(+)$1	283	158	182	12.5103
CCC}DDDDDDDDBBYYDDDDCCC:	chr7:148709298-148709552(-)$1	254	225	249	11.6034
CCCZZZBB}BB~~~~EEEEEZZZC	chr6:7581116-7581423(+)$1	307	126	150	13.5586
}FFFFFFYYDDDDZZZFFFFFF}E	chr20:61461017-61461270(+)$1	253	159	183	12.1528
:::EEEEE}CCCZZZEEEEEYYBB	chr19:39340412-39340681(-)$1	269	229	253	13.6030
DDDZZZEEEEE}BB~~~~BB}BB:	chr2:232327856-232328127(-)$1	271	236	260	12.5010
CCCYYEEEEEBBEEEEEYYCCC}F	chrX:152913282-152913587(+)$1	305	224	248	12.9248
EEE}EEEEEFFFFFFEEEEE{A{D	chr6:7910856-7911123(-)$1	267	146	170	10.5254
DDYYCCCYYDDDD}DDDD}A}BB:	chr2:232325341-232325614(-)$1	273	142	166	12.5332
B}DDDDCCC}CCCYYCCC~~~~BB	chr2:232326150-232326383(-)$1	233	192	216	12.2233
CCC}DDDD}DDDDZZZEEEEEEEE	chr3:167750216-167750601(-)$1	385	140	164	12.9665
CCYYEEEEE}FFFFFFCCCYYBBY	chr2:54197742-54198040(-)$1	298	261	285	12.2742
:::CCC}CCC}BBYYDDDDYYBB:	chr17:27003135-27003439(+)$1	304	195	219	11.0829
aEEEEEYYEEEEEYYCCC::BBKK	chr14:24680591-24680908(-)$1	317	78	102	11.0196
d::BBYYDDDD}BB}EEEEE}AGG	chr16:87902809-87903179(-)$1	370	338	362	11.0936
GGG}BBBB}DDDD}CCC}CCCZZZ	chr12:133067139-133067463(+)$1	324	158	182	10.0981
ZZEEEEEYYBB~~~~EEEEE}EEE	chr20:2638654-2638993(+)$1	339	279	303	14.9864
~~~~DDDD}DDDD}CCCYYBBCCC	chr9:117053029-117053295(+)$1	266	215	239	11.9755
CC}DDDDYYDDDDYYEEEEEDDDD	chr20:60640260-60640607(-)$1	347	247	271	13.4507
IIIIIII}DDDD}BBEEEEEZZZH	chr4:3519732-3520014(-)$1	282	248	272	10.7242
DDZZZEEEEE?????EEEEE}CCC	chr1:29475170-29475448(-)$1	278	252	276	11.8068
GYYFFFFFFDDDDYYCCCYYBB}B	chr19:11105402-11105704(+)$1	302	184	208	13.0689
}FFFFFFEEEEEZZZEEEEE}DDD	chr20:42086679-42086903(+)$1	224	179	203	13.4566
DDD}EEEEE}BBYYEEEEE~~~~C	chr6:43738518-43738783(+)$1	265	204	228	14.8333
CC}DDDDYYDDDD}BBFFFFFFFF	chr12:133067023-133067339(+)$1	316	166	190	11.2028
EEE}EEEEE}CCCYYCCCBBYYGG	chr11:130011316-130011559(+)$1	243	123	147	12.6074
EEEEE~~~~DDDD~~~~FFFFFF}	chr3:47676577-47676846(-)$1	269	205	229	13.3069
}EEEEEGGGGGGG}EEEEEYYBB:	chr22:19166061-19166345(-)$1	284	200	224	9.8663
cFFFFFFYYDDDDZZZBBYYBB}D	chr9:117052246-117052491(+)$1	245	89	113	12.6080
DDDEEEEEYYEEEEEEEEEE::::	chr2:232326183-232326513(-)$1	330	305	329	12.1757
d:EEEEE}BB}AYYFFFFFF}A}B	chr16:88789562-88789825(-)$1	263	143	167	11.5814
EEE}EEEEEDDDDYYEEEEE}BB}	chr1:156713841-156714162(-)$1	321	98	122	16.1958
B~~~~CCCCCC~~~~DDDDYYBB:	chr6:44218091-44218431(+)$1	340	157	181	12.9021
DEEEEEEEEEE~~~~EEEEEFFFF	chr7:134632375-134632621(+)$1	246	190	214	14.2785
FFFFZZZFFFFFFYYDDDDZZZBB	chr14:24687486-24687747(-)$1	261	219	243	11.4706
DDYYCCCYYDDDD}EEEEEZZZDD	chr11:57094066-57094425(-)$1	359	319	343	13.6499
GGG}EEEEE}CCC}CCC}AYYDDD	chr10:120809238-120809493(-)$1	255	226	250	10.9931
:A}CCCZZZDDDD}EEEEEEEEEE	chr2:232325088-232325357(-)$1	269	183	207	11.9840
:::FFFFFF______EEEEEBB::	chr15:72501951-72502233(-)$1	282	133	157	10.8176
}EEEEE}A}DDDDYYCCCYYEEEE	chr6:90367886-90368190(-)$1	304	192	216	13.7870
ZDDDD}BBYYDDDD}EEEEE}CCC	chr14:23790895-23791131(+)$1	236	207	231	12.7417
FFFFFF~~~~BB}AYYDDDD}BB:	chr16:72821480-72821761(-)$1	281	249	273	12.9131
CCCYYCCCYYBBZZZEEEEE::::	chr20:62626165-62626432(+)$1	267	211	235	12.1711
==DDDD}DDDD}AYYEEEEECCC?	chr6:32945944-32946196(+)$1	252	184	208	10.4961
:DDDDYYFFFFFFZZZCCC}CCC:	chr9:127998786-127999066(-)$1	280	115	139	10.9045
~~~~FFFFFFYYAYYDDDDZZZGG	chr20:62624682-62624938(+)$1	256	221	245	11.3787
HHZZZFFFFFF~~~~FFFFFF:::	chr17:43163775-43164096(+)$1	321	143	167	9.8031
CBB}EEEEECCCZZZBBEEEEE__	chr11:62494184-62494480(-)$1	296	262	286	13.0424
GGGG}BBFFFFFFYYEEEEECCCG	chr15:102029585-102029888(-)$1	303	256	280	10.5176

#otherMatches

#Seq PSSM
CAGCGUGGGGCUUUCAGCUGAGGA	chr22:36682655-36682891(-)$1	236	181	205	10.2721
GCGGUUAGAGCGUCUCCCGGAAGG	chr13:107220115-107220391(-)$1	276	100	124	12.5901
CAGGCCCGCGGGCGCACGGGCGAG	chr8:98787972-98788273(+)$1	301	125	149	14.0986
GCCGCCGUGACCUAUUCACCCUCC	chr2:232577413-232577622(+)$1	209	185	209	10.4197
CAAGACGCCGGGAAGUCCUGCCUG	chr1:19433274-19433558(-)$1	284	243	267	11.8494
GCAGCAUCUUUCUUAGUGAUUCAG	chr9:128000817-128001117(-)$1	300	262	286	12.3041
GGGGUGGAGCUGGUUGUUCUGGAC	chr11:118919429-118919699(-)$1	270	206	230	11.3878
GCGGGAGAUGGCCGAGAUGCGGGC	chr1:156105622-156105905(+)$1	283	158	182	12.5103
UUGAUGUCUCUGGCUAUCCCACCC	chr7:148709298-148709552(-)$1	254	225	249	11.6034
AGCAAGCCAUCAAAAUCACCAACC	chr6:7581116-7581423(+)$1	307	126	150	13.5586
UGCAGGGACAUGGCCCGGGGUCGG	chr20:61461017-61461270(+)$1	253	159	183	12.1528
gugagggcggcCGGGCCCCUAAGC	chr19:39340412-39340681(-)$1	269	229	253	13.6030
UGCAGAAUUAUGUUAAAACUACAA	chr2:232327856-232328127(-)$1	271	236	260	12.5010
GAGUCGGCGCGCAUCGGUGGGGCG	chrX:152913282-152913587(+)$1	305	224	248	12.9248
GCUGGCCCGGCCGGCGGCCCUGAC	chr6:7910856-7911123(-)$1	267	146	170	10.5254
aggaugaugaggacgaggaugacg	chr2:232325341-232325614(-)$1	273	142	166	12.5332
GAUCAACAUAUUCCUUCCACGACA	chr2:232326150-232326383(-)$1	233	192	216	12.2233
GGCCCUGGAGGAGGAAGAAAUGGA	chr3:167750216-167750601(-)$1	385	140	164	12.9665
CCGACUUGCAGCUGGCCCAGAUCA	chr2:54197742-54198040(-)$1	298	261	285	12.2742
GAAGCGUGUGAGCCGUAGGAGCAU	chr17:27003135-27003439(+)$1	304	195	219	11.0829
ACUCUUGAUGUUCAGGGUAUGGGC	chr14:24680591-24680908(-)$1	317	78	102	11.0196
UUAUCGGCUCGGGCAUCUUCGUGA	chr16:87902809-87903179(-)$1	370	338	362	11.0936
ggccuccgcggcgcgcccccccga	chr12:133067139-133067463(+)$1	324	158	182	10.0981
AGAUUAGAAUGCAAAUGGACAUUC	chr20:2638654-2638993(+)$1	339	279	303	14.9864
UGAUGCAGACUCUAGUGGUUCCGA	chr9:117053029-117053295(+)$1	266	215	239	11.9755
cgccggccccggccccgggcccgg	chr20:60640260-60640607(-)$1	347	247	271	13.4507
AGGCUGGUGAGUGCCCGCCCGGGA	chr4:3519732-3520014(-)$1	282	248	272	10.7242
CCAGAUCUCCAUCCCGCUCCGUGU	chr1:29475170-29475448(-)$1	278	252	276	11.8068
CAAGGCAGUGGCCACGUACCAUGC	chr19:11105402-11105704(+)$1	302	184	208	13.0689
AGGCCGCGGCGCCGCGUGGCAGGG	chr20:42086679-42086903(+)$1	224	179	203	13.4566
gagggggaggaggaagaagagaag	chr6:43738518-43738783(+)$1	265	204	228	14.8333
cgcgcgcagcgggaccguggccgg	chr12:133067023-133067339(+)$1	316	166	190	11.2028
GAGAGUUGGAGGCCUCGAGGAAGA	chr11:130011316-130011559(+)$1	243	123	147	12.6074
GCAUGAAUGGUCGUAUUGUUUUUA	chr3:47676577-47676846(-)$1	269	205	229	13.3069
gcccgcgUCCGGGAAGGCCAAGCU	chr22:19166061-19166345(-)$1	284	200	224	9.8663
AGGGACCAAAGGGAAAGCAAGGCA	chr9:117052246-117052491(+)$1	245	89	113	12.6080
GUAUCUUGAGAUUCUGGGAUCAAC	chr2:232326183-232326513(-)$1	330	305	329	12.1757
CAGGAGCAGGAGCAGGCAAGGCAG	chr16:88789562-88789825(-)$1	263	143	167	11.5814
GGAAUGCAGAGGGCAGCAGCGACG	chr1:156713841-156714162(-)$1	321	98	122	16.1958
CAGAAACCCUGAUGACAUCACCCA	chr6:44218091-44218431(+)$1	340	157	181	12.9021
CCUAGUGCCGUGCGGCUGUUCUUU	chr7:134632375-134632621(+)$1	246	190	214	14.2785
UAUGAACUUGGUCCUUUUGCUCUC	chr14:24687486-24687747(-)$1	261	219	243	11.4706
GUAAGAGUAAUGAGUUGGAGUGGA	chr11:57094066-57094425(-)$1	359	319	343	13.6499
uuuuuuuugguugaggcacagucu	chr10:120809238-120809493(-)$1	255	226	250	10.9931
UAGGGGAUAUGGGGGAGAUAAACA	chr2:232325088-232325357(-)$1	269	183	207	11.9840
ACUACAAGAACAUCUGCAAGGUGG	chr15:72501951-72502233(-)$1	282	133	157	10.8176
UGGAGAACAUGCAGAACACACAGG	chr6:90367886-90368190(-)$1	304	192	216	13.7870
gcggguggcaggcggggggugggg	chr14:23790895-23791131(+)$1	236	207	231	12.7417
CACAGAACAAUCACGAGAGCAGCA	chr16:72821480-72821761(-)$1	281	249	273	12.9131
CCUGACAGUUUCUUUGCCAAACAU	chr20:62626165-62626432(+)$1	267	211	235	12.1711
CUUCUGGCUUUGGACCUUCUGGAG	chr6:32945944-32946196(+)$1	252	184	208	10.4961
CCAAUUAUCAGCAAACUCUAUGGA	chr9:127998786-127999066(-)$1	280	115	139	10.9045
AGACUGCUCUUACGUGGAAUUUAU	chr20:62624682-62624938(+)$1	256	221	245	11.3787
CCAUUGAGCUGUUCUCAGUGGGUC	chr17:43163775-43164096(+)$1	321	143	167	9.8031
GUCAGGCGGGGUAAAUGGUGGCGA	chr11:62494184-62494480(-)$1	296	262	286	13.0424
CCGGCCGAGGCGGACCGCGUGGCG	chr15:102029585-102029888(-)$1	303	256	280	10.5176

#DB
).))))).)))))))).))).)).	chr22:36682655-36682891(-)$1	1	181	205	10.2721
))))))..).))....)))).)))	chr13:107220115-107220391(-)$1	1	100	124	12.5901
)))....))))).).))))).)))	chr8:98787972-98788273(+)$1	1	125	149	14.0986
))).)..))))))....)))))).	chr2:232577413-232577622(+)$1	1	185	209	10.4197
...))))..)))).))))))))..	chr1:19433274-19433558(-)$1	1	243	267	11.8494
.))))).))))))..).)))....	chr9:128000817-128001117(-)$1	1	262	286	12.3041
.))))....))).)).))))...)	chr11:118919429-118919699(-)$1	1	206	230	11.3878
).)))))..)))))))))).))).	chr1:156105622-156105905(+)$1	1	158	182	12.5103
))).))))))))))..))))))).	chr7:148709298-148709552(-)$1	1	225	249	11.6034
)))...)).))....)))))...)	chr6:7581116-7581423(+)$1	1	126	150	13.5586
.))))))..))))...)))))).)	chr20:61461017-61461270(+)$1	1	159	183	12.1528
...))))).)))...)))))..))	chr19:39340412-39340681(-)$1	1	229	253	13.6030
)))...))))).))....)).)).	chr2:232327856-232328127(-)$1	1	236	260	12.5010
)))..))))))))))))..))).)	chrX:152913282-152913587(+)$1	1	224	248	12.9248
))).)))))))))))(((((.(.(	chr6:7910856-7911123(-)$1	1	146	170	10.5254
))..)))..)))).)))).).)).	chr2:232325341-232325614(-)$1	1	142	166	12.5332
).))))))).)))..)))....))	chr2:232326150-232326383(-)$1	1	192	216	12.2233
))).)))).))))...))))))))	chr3:167750216-167750601(-)$1	1	140	164	12.9665
))..))))).)))))))))..)).	chr2:54197742-54198040(-)$1	1	261	285	12.2742
...))).))).))..))))..)).	chr17:27003135-27003439(+)$1	1	195	219	11.0829
))))))..)))))..)))..((..	chr14:24680591-24680908(-)$1	1	78	102	11.0196
)..))..)))).)).))))).)))	chr16:87902809-87903179(-)$1	1	338	362	11.0936
))).)))).)))).))).)))...	chr12:133067139-133067463(+)$1	1	158	182	10.0981
..)))))..))....))))).)))	chr20:2638654-2638993(+)$1	1	279	303	14.9864
....)))).)))).)))..)))))	chr9:117053029-117053295(+)$1	1	215	239	11.9755
)).))))..))))..)))))))))	chr20:60640260-60640607(-)$1	1	247	271	13.4507
))))))).)))).)))))))...)	chr4:3519732-3520014(-)$1	1	248	272	10.7242
))...))))).....))))).)))	chr1:29475170-29475448(-)$1	1	252	276	11.8068
)..))))))))))..)))..)).)	chr19:11105402-11105704(+)$1	1	184	208	13.0689
.)))))))))))...))))).)))	chr20:42086679-42086903(+)$1	1	179	203	13.4566
))).))))).))..)))))....)	chr6:43738518-43738783(+)$1	1	204	228	14.8333
)).))))..)))).))))))))((	chr12:133067023-133067339(+)$1	1	166	190	11.2028
))).))))).)))..)))))..))	chr11:130011316-130011559(+)$1	1	123	147	12.6074
)))))....))))....)))))).	chr3:47676577-47676846(-)$1	1	205	229	13.3069
.)))))))))))).)))))..)).	chr22:19166061-19166345(-)$1	1	200	224	9.8663
)))))))..))))...))..)).)	chr9:117052246-117052491(+)$1	1	89	113	12.6080
))))))))..))))))))))....	chr2:232326183-232326513(-)$1	1	305	329	12.1757
).))))).)).)..)))))).).)	chr16:88789562-88789825(-)$1	1	143	167	11.5814
))).)))))))))..))))).)).	chr1:156713841-156714162(-)$1	1	98	122	16.1958
)....))))))....))))..)).	chr6:44218091-44218431(+)$1	1	157	181	12.9021
)))))))))))....)))))))))	chr7:134632375-134632621(+)$1	1	190	214	14.2785
))))...))))))..))))...))	chr14:24687486-24687747(-)$1	1	219	243	11.4706
))..)))..)))).)))))...))	chr11:57094066-57094425(-)$1	1	319	343	13.6499
))).))))).))).))).)..)))	chr10:120809238-120809493(-)$1	1	226	250	10.9931
.).)))...)))).))))))))))	chr2:232325088-232325357(-)$1	1	183	207	11.9840
...))))))......)))))))..	chr15:72501951-72502233(-)$1	1	133	157	10.8176
.))))).).))))..)))..))))	chr6:90367886-90368190(-)$1	1	192	216	13.7870
.)))).))..)))).))))).)))	chr14:23790895-23791131(+)$1	1	207	231	12.7417
))))))....)).)..)))).)).	chr16:72821480-72821761(-)$1	1	249	273	12.9131
)))..)))..))...)))))....	chr20:62626165-62626432(+)$1	1	211	235	12.1711
)))))).)))).)..)))))))).	chr6:32945944-32946196(+)$1	1	184	208	10.4961
.))))..))))))...))).))).	chr9:127998786-127999066(-)$1	1	115	139	10.9045
....))))))..)..))))...))	chr20:62624682-62624938(+)$1	1	221	245	11.3787
))...))))))....))))))...	chr17:43163775-43164096(+)$1	1	143	167	9.8031
))).))))))))...)))))))..	chr11:62494184-62494480(-)$1	1	262	286	13.0424
)))).))))))))..)))))))))	chr15:102029585-102029888(-)$1	1	256	280	10.5176

#PSSM
C : 0.16	D : 0.14	: : 0.12	G : 0.08	} : 0.08	E : 0.07	F : 0.05	B : 0.03	d : 0.03	Z : 0.03	~ : 0.03	b : 0.01	A : 0.01	a : 0.01	I : 0.01	c : 0.01	= : 0.01	H : 0.01	
D : 0.17	E : 0.16	C : 0.14	: : 0.12	F : 0.10	G : 0.07	~ : 0.05	} : 0.03	Z : 0.01	I : 0.01	Y : 0.01	A : 0.01	= : 0.01	H : 0.01	B : 0.01	
E : 0.23	D : 0.16	F : 0.10	: : 0.08	C : 0.08	G : 0.07	Y : 0.07	~ : 0.05	} : 0.05	Z : 0.03	I : 0.01	B : 0.01	
E : 0.21	} : 0.17	F : 0.14	D : 0.14	Y : 0.08	~ : 0.07	Z : 0.07	C : 0.03	B : 0.01	I : 0.01	G : 0.01	
E : 0.33	D : 0.19	F : 0.14	Z : 0.08	C : 0.07	~ : 0.03	Y : 0.03	B : 0.03	A : 0.01	I : 0.01	} : 0.01	
E : 0.35	F : 0.16	D : 0.14	C : 0.10	~ : 0.05	Y : 0.05	Z : 0.05	B : 0.03	I : 0.01	} : 0.01	
E : 0.30	F : 0.12	D : 0.10	Y : 0.08	C : 0.08	~ : 0.07	} : 0.07	B : 0.07	Z : 0.03	I : 0.01	G : 0.01	
E : 0.26	Y : 0.19	F : 0.16	D : 0.08	C : 0.07	} : 0.05	~ : 0.05	B : 0.05	G : 0.01	Z : 0.01	A : 0.01	
E : 0.24	Y : 0.21	F : 0.16	} : 0.10	D : 0.07	~ : 0.05	C : 0.05	B : 0.03	A : 0.01	G : 0.01	Z : 0.01	
D : 0.35	F : 0.14	E : 0.12	} : 0.10	C : 0.08	B : 0.07	Y : 0.05	G : 0.01	_ : 0.01	~ : 0.01	
D : 0.37	F : 0.16	B : 0.12	C : 0.12	E : 0.10	} : 0.03	? : 0.01	G : 0.01	_ : 0.01	Y : 0.01	
D : 0.33	F : 0.14	B : 0.10	C : 0.10	~ : 0.08	E : 0.07	} : 0.05	? : 0.01	G : 0.01	A : 0.01	_ : 0.01	Y : 0.01	
D : 0.30	F : 0.14	~ : 0.10	} : 0.07	B : 0.07	Z : 0.07	E : 0.05	C : 0.05	Y : 0.03	A : 0.03	? : 0.01	G : 0.01	_ : 0.01	
Y : 0.26	} : 0.16	~ : 0.14	Z : 0.14	B : 0.08	F : 0.05	A : 0.03	E : 0.03	C : 0.01	? : 0.01	_ : 0.01	D : 0.01	
Y : 0.26	~ : 0.16	Z : 0.14	E : 0.12	F : 0.07	C : 0.07	} : 0.05	B : 0.05	D : 0.01	? : 0.01	_ : 0.01	
E : 0.42	C : 0.16	D : 0.08	F : 0.07	~ : 0.07	Z : 0.07	Y : 0.03	B : 0.03	A : 0.01	} : 0.01	
E : 0.44	C : 0.19	D : 0.16	F : 0.07	~ : 0.05	} : 0.03	B : 0.03	
E : 0.44	C : 0.17	D : 0.16	F : 0.10	Y : 0.03	} : 0.03	~ : 0.01	B : 0.01	
E : 0.44	D : 0.14	C : 0.10	F : 0.10	Y : 0.08	B : 0.03	} : 0.01	~ : 0.01	: : 0.01	A : 0.01	
E : 0.37	Y : 0.14	F : 0.10	C : 0.08	D : 0.07	B : 0.05	Z : 0.05	} : 0.03	~ : 0.03	A : 0.01	: : 0.01	
} : 0.23	C : 0.14	Y : 0.12	F : 0.10	Z : 0.10	B : 0.08	E : 0.07	~ : 0.03	: : 0.03	_ : 0.01	{ : 0.01	D : 0.01	
B : 0.23	C : 0.19	Z : 0.12	F : 0.08	E : 0.08	D : 0.07	A : 0.05	: : 0.05	Y : 0.03	~ : 0.03	_ : 0.01	
B : 0.21	C : 0.16	D : 0.08	Z : 0.08	} : 0.08	F : 0.07	E : 0.07	: : 0.07	G : 0.05	_ : 0.03	{ : 0.01	K : 0.01	~ : 0.01	
: : 0.24	D : 0.12	C : 0.12	E : 0.08	B : 0.08	G : 0.07	} : 0.05	F : 0.05	Z : 0.03	_ : 0.03	Y : 0.01	K : 0.01	H : 0.01	? : 0.01	

#score	683.2926898803282
#seq	56
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_UTR_m1_run2.txt

#BEAR
ddd"""ccctttttttttttccc333d	chr4:6698727-6698980(+)$1	253	210	237	18.1261
"""ffffffuuuuuuuuuuuuffffff	chr3:183901583-183901840(+)$1	257	93	120	20.2218
:ffffffwwwwwwwwwwwwwwffffff	chr19:10683301-10683555(-)$1	254	150	177	20.5742
cc!!cccwwwwwwwwwwwwwwccc22c	chr6:33257454-33257758(+)$1	304	188	215	23.0836
========vvvvvvvvvvvvv======	chr18:19209019-19209285(+)$1	266	135	162	21.1586
ddd^^^^^^^^^^^^^^^^^^dddd44	chr1:43391959-43392188(-)$1	229	20	47	19.6406
!ffffff^^^^^^^^^^^^^^^^^^^f	chr19:2732495-2732782(-)$1	287	219	246	19.4372
==^^^^^^^^^^^^^^^^^^^======	chr3:184052904-184053165(+)$1	261	19	46	20.4356
ccc[cccvvvvvvvvvvvvvccc]ccc	chr19:1009930-1010247(-)$1	317	90	117	21.1762
g^^^^^^^^^^^^^^^^^^^^gggggg	chr22:38072936-38073167(+)$1	231	127	154	20.2357
####cccxxxxxxxxxxxxxxxccc77	chr19:13054820-13055033(+)$1	213	34	61	20.6012
"""cccyyyyyyyyyyyyyyyyccc33	chr16:58741877-58742185(-)$1	308	210	237	23.6463
ccc[eeeeettttttttttteeeee]c	chr22:18218130-18218444(-)$1	314	42	69	18.0446
ccc[cccwwwwwwwwwwwwwwccc]cc	chr19:1393142-1393428(+)$1	286	109	136	22.7368
gggggggwwwwwwwwwwwwwwgggggg	chr6:31698297-31698537(-)$1	240	171	198	22.1622
iiiiiii^^^^^^^^^^^^^^^^^^^^	chr11:61633076-61633373(+)$1	297	56	83	19.5475
!gggggggvvvvvvvvvvvvvgggggg	chr14:103396930-103397206(+)$1	276	108	135	20.8745
hhhhhhhyyyyyyyyyyyyyyyyhhhh	chr1:156278806-156279084(-)$1	278	20	47	19.2241
========vvvvvvvvvvvvv======	chr5:176524694-176524945(+)$1	251	166	193	21.1586
c[eeeeexxxxxxxxxxxxxxxeeeee	chr8:100899617-100899834(-)$1	217	105	132	20.3928
====[ddddtttttttttttdddd]==	chr6:43483532-43483768(-)$1	236	17	44	17.6479
cc^^^^^^^^^^^^^^^^^^^ccc]bb	chr16:31202728-31202976(+)$1	248	93	120	19.8826
f"""ccc^^^^^^^^^^^^^^^^^^^^	chr15:40765087-40765338(+)$1	251	94	121	20.3198
gg[eeeeevvvvvvvvvvvvveeeee2	chr14:94770634-94770927(-)$1	293	245	272	20.8299
:ffffffwwwwwwwwwwwwwwffffff	chr17:7215041-7215244(+)$1	203	4	31	20.5742
ffffffxxxxxxxxxxxxxxxffffff	chr11:67379814-67380064(+)$1	250	209	236	19.4766
[ffffffxxxxxxxxxxxxxxxfffff	chr1:109856454-109856717(-)$1	263	89	116	19.9119
dd^^^^^^^^^^^^^^^^^^^dddd33	chr11:62382728-62382990(-)$1	262	58	85	20.1355
#ffffff^^^^^^^^^^^^^^^^^^^^	chr3:133495963-133496171(+)$1	208	48	75	19.3895
####ccc^^^^^^^^^^^^^^^^^^cc	chr11:62656037-62656344(+)$1	307	138	165	20.6099
dd^^^^^^^^^^^^^^^^^^^ddddee	chr17:41151923-41152149(+)$1	226	39	66	19.6235
ee[cccxxxxxxxxxxxxxxxccceee	chr20:33128294-33128577(+)$1	283	227	254	20.4204
d^^^^^^^^^^^^^^^^^^^^ddddff	chr19:56206603-56206885(+)$1	282	22	49	19.8054
!a!!cccwwwwwwwwwwwwwwccc22a	chr19:39220100-39220335(+)$1	235	194	221	23.3518
"""ddddwwwwwwwwwwwwwwdddddd	chr6:33243536-33243757(+)$1	221	66	93	21.9803
#eeeeeyyyyyyyyyyyyyyyyeeeee	chr12:6840383-6840633(+)$1	250	62	89	22.3504
[eeeeeyyyyyyyyyyyyyyyyeeeee	chr20:18724731-18725010(+)$1	279	10	37	22.3034
!ffffffxxxxxxxxxxxxxxxfffff	chr11:76508910-76509164(+)$1	254	18	45	19.9947
[ffffffxxxxxxxxxxxxxxxfffff	chr2:27293478-27293689(-)$1	211	134	161	19.9119
^^^^^^^^^^^^^^^^^^^^^gggggg	chr17:39958361-39958622(-)$1	261	76	103	20.2591
ddd[eeeeeuuuuuuuuuuuueeeeed	chr7:150773327-150773629(+)$1	302	178	205	20.0511
ee!!ccc!!attttttttttta22ccc	chr1:40538868-40539140(-)$1	272	171	198	18.1518
""eeeeevvvvvvvvvvvvveeeee33	chr11:75511595-75511890(+)$1	295	50	77	21.4095
^^^^^^^^^^^^^^^^^^^^^ccc22a	chr19:12841378-12841661(-)$1	283	157	184	20.4425
::ddddyyyyyyyyyyyyyyyyddddD	chr2:27664677-27664969(+)$1	292	185	212	18.8403
f"""ddddtttttttttttdddd333f	chr12:9220253-9220463(-)$1	210	111	138	18.0658
^^^^^^^^^^^^^^^^^^^^^^^^^^a	chr16:2569679-2569938(+)$1	259	37	64	20.4327
c"""ccctttttttttttccc333ccc	chr11:66044412-66044677(+)$1	265	228	255	18.0316
e"""cccuuuuuuuuuuuuccc]eeee	chr17:61908605-61908858(+)$1	253	47	74	21.0506
"bb^^^^^^^^^^^^^^^^^^^bb444	chr20:30156961-30157253(+)$1	292	30	57	19.7575
eeeee[cccuuuuuuuuuuuuccc333	chr19:5894675-5894908(-)$1	233	63	90	21.0663
^^^^^^^^^^^^^^^^^^^^^^^^^^a	chr1:110203925-110204322(+)$1	397	105	132	20.4327
b!!eeeeettttttttttteeeee22b	chr3:186338867-186339083(+)$1	216	115	142	17.6438
###dddd^^^^^^^^^^^^^^^^^^^^	chr17:37009220-37009425(-)$1	205	22	49	19.8515
f[eeeeexxxxxxxxxxxxxxxeeeee	chr11:838545-838806(+)$1	261	131	158	20.2248
ee[eeeeeuuuuuuuuuuuueeeee]e	chr16:1374633-1374936(+)$1	303	125	152	20.8392
dd!!dddduuuuuuuuuuuudddd22d	chr17:79214860-79215147(+)$1	287	17	44	20.5346
cceeeeeuuuuuuuuuuuueeeee22c	chr14:105996094-105996360(+)$1	266	62	89	20.2201
dd!!ddddvvvvvvvvvvvvvdddd33	chr19:12841581-12841826(-)$1	245	89	116	21.0620
gggggggxxxxxxxxxxxxxxxggggg	chr1:161192008-161192227(-)$1	219	62	89	20.5131
::ggggggguuuuuuuuuuuugggggg	chr1:20978611-20978862(-)$1	251	52	79	18.4106
Ggggggggvvvvvvvvvvvvvgggggg	chr16:84087309-84087552(-)$1	243	25	52	20.1805
^^^^^^^^^^^^^^^^^^^^^ffffff	chr17:80196738-80196976(+)$1	238	135	162	19.8677
cc!!dddduuuuuuuuuuuuddddccc	chrX:19377654-19377935(+)$1	281	56	83	20.9357
e"""dddduuuuuuuuuuuudddd]ee	chr14:24774347-24774647(-)$1	300	160	187	20.9233
gg[ddddwwwwwwwwwwwwwwdddd22	chr11:57381901-57382264(+)$1	363	259	286	21.7509
hhhhhhhyyyyyyyyyyyyyyyyhhhh	chr8:63927631-63927894(-)$1	263	146	173	19.2241
"ffffffuuuuuuuuuuuuffffff33	chr7:1036741-1037012(-)$1	271	88	115	19.8480
gggggggxxxxxxxxxxxxxxxggggg	chr17:36891473-36891754(-)$1	281	140	167	20.5131
^^^^^^^^^^^^^^^^^^^^^gggggg	chr14:65406389-65406617(-)$1	228	9	36	20.2591
::eeeeeauuuuuuuuuuuua]eeeee	chr5:140025095-140025364(-)$1	269	58	85	19.6098
ccc[bbwwwwwwwwwwwwwwbbccc::	chr6:33739767-33740086(-)$1	319	227	254	18.7805

#otherMatches

#Seq PSSM
GUGUCCUCUCCCCACAAAACAGAAUUC	chr4:6698727-6698980(+)$1	253	210	237	18.1261
CCAGGUGGGUUCCCUUUCCUUCCCACC	chr3:183901583-183901840(+)$1	257	93	120	20.2218
CCAGAGGUCCCGCUGGCCCCUCCUCUG	chr19:10683301-10683555(-)$1	254	150	177	20.5742
CUGAUCCAGAAGAAGCUACAGGGAGAA	chr6:33257454-33257758(+)$1	304	188	215	23.0836
UGUUUGUUUAUGUCAGUUUUUAAUAAA	chr18:19209019-19209285(+)$1	266	135	162	21.1586
UCAAAUUAAUCUUUCUUUACCUGAGAC	chr1:43391959-43392188(-)$1	229	20	47	19.6406
UACUUUUUAAAAUACUUCUUUCUCUUA	chr19:2732495-2732782(-)$1	287	219	246	19.4372
UAUAUAUAAAGUCUUGAAAUUUGGUGU	chr3:184052904-184053165(+)$1	261	19	46	20.4356
ACCCGCUAGUGAGGUGUUUGAGCUGGU	chr19:1009930-1010247(-)$1	317	90	117	21.1762
CGCUAAGAGGUGAGAAGUGAAGUCGGG	chr22:38072936-38073167(+)$1	231	127	154	20.2357
AUUUUGGUUUUGUUCCCCUCCUCCACU	chr19:13054820-13055033(+)$1	213	34	61	20.6012
GAUCAUUUCUUUCAGCCACAGUGUGUA	chr16:58741877-58742185(-)$1	308	210	237	23.6463
GAAUGAGCCUAGCUGAUUCUGGCUUUU	chr22:18218130-18218444(-)$1	314	42	69	18.0446
GAGGAGGCUACUACCACUAUUCCUACU	chr19:1393142-1393428(+)$1	286	109	136	22.7368
UUUACGCAAUGGGGAUUUAAAGUGUGG	chr6:31698297-31698537(-)$1	240	171	198	22.1622
UGUGGCUGGACGCCUACCUUCACAAAU	chr11:61633076-61633373(+)$1	297	56	83	19.5475
UUGGGGCUCUCCACCCGCUCUGGCCCC	chr14:103396930-103397206(+)$1	276	108	135	20.8745
AUCGUUUCAGGCCACAAAAAGAAAGGC	chr1:156278806-156279084(-)$1	278	20	47	19.2241
CAGGGUUCUGCUCGGCUUCUUGGACCU	chr5:176524694-176524945(+)$1	251	166	193	21.1586
UGGAAUAUAAAGGUAAUAUGGUUAUUU	chr8:100899617-100899834(-)$1	217	105	132	20.3928
AGCGCCUGCGCGAGGAAGAAGUAGACG	chr6:43483532-43483768(-)$1	236	17	44	17.6479
UUUUGUAACCUUCCAAUUCCUGAUCAC	chr16:31202728-31202976(+)$1	248	93	120	19.8826
CCUCCCUAAUUCUCCCUUCCUUCCCCA	chr15:40765087-40765338(+)$1	251	94	121	20.3198
GCGGGAGGUUUCCCCCAAUCUCCUCCA	chr14:94770634-94770927(-)$1	293	245	272	20.8299
UCAGGCUUACUUUCUGCCCCUAGCCUG	chr17:7215041-7215244(+)$1	203	4	31	20.5742
UGUGCUCUUUACCCUUUACCCAGCACA	chr11:67379814-67380064(+)$1	250	209	236	19.4766
ACCACAGUACCUCUUACACUCCCUGUG	chr1:109856454-109856717(-)$1	263	89	116	19.9119
GUGGAACAGAAGGACAGAUGGACCCAG	chr11:62382728-62382990(-)$1	262	58	85	20.1355
CACAUAUGAAAAAUACUUAGGAGAAGA	chr3:133495963-133496171(+)$1	208	48	75	19.3895
ACAUGGACCCACUACCCUUCUCCUUUC	chr11:62656037-62656344(+)$1	307	138	165	20.6099
GCACCUCAGAUCGCCCCUACAGCCAUG	chr17:41151923-41152149(+)$1	226	39	66	19.6235
CUUGGAACCCACUCACACCAAUCCAGU	chr20:33128294-33128577(+)$1	283	227	254	20.4204
ACCCACGUACAUCUCUCCCCUUGGCGG	chr19:56206603-56206885(+)$1	282	22	49	19.8054
UCUGGUCUGGUAAAUAUGUAUGAUGUG	chr19:39220100-39220335(+)$1	235	194	221	23.3518
GUUGAGGAAAGCAGACAUUGACCUCAC	chr6:33243536-33243757(+)$1	221	66	93	21.9803
UGCUCUCUCCCUUGUUUCCUUAAGAGC	chr12:6840383-6840633(+)$1	250	62	89	22.3504
AGCUGUCAAAGCUCGAAAAACAGCAGC	chr20:18724731-18725010(+)$1	279	10	37	22.3034
ACCGGCCUCCCCUACCCCUGCUGGCCG	chr11:76508910-76509164(+)$1	254	18	45	19.9947
UAUGAGGGGCCUUCACACUUCACUUCA	chr2:27293478-27293689(-)$1	211	134	161	19.9119
aaaaaaaaaaaaaaaaaCUUAAGAUGG	chr17:39958361-39958622(-)$1	261	76	103	20.2591
GGAUGGGGUUCCCCCUCCCAUGCCCCU	chr7:150773327-150773629(+)$1	302	178	205	20.0511
CAACCUGCCCUUUCUUAAUAUGACUAG	chr1:40538868-40539140(-)$1	272	171	198	18.1518
UUUAAAAGAAAUUAUAACAAUUUUGCU	chr11:75511595-75511890(+)$1	295	50	77	21.4095
CUCCCCUUAGCCAUCACUUCUGGGAAG	chr19:12841378-12841661(-)$1	283	157	184	20.4425
UCUGCACUUUGUUUACUUGUUUUGCAC	chr2:27664677-27664969(+)$1	292	185	212	18.8403
UUUGUAUCUUUAAAGACUUGAUGAAUA	chr12:9220253-9220463(-)$1	210	111	138	18.0658
AUCGUCGCCCUCAUCCUCUCCACAAAG	chr16:2569679-2569938(+)$1	259	37	64	20.4327
UCUCUGCUCACCCACUCUGCACCCAGG	chr11:66044412-66044677(+)$1	265	228	255	18.0316
GUUUAGCUGAUCCCCACUUGCUUUCUC	chr17:61908605-61908858(+)$1	253	47	74	21.0506
AUCGAAGGGGCUGGAGAAGAAAGAGAA	chr20:30156961-30157253(+)$1	292	30	57	19.7575
GCCGCCGCCUGCGUGUACUUUGGCAUA	chr19:5894675-5894908(-)$1	233	63	90	21.0663
UCACUUCCCCUAAACCCCUGUCCCAUG	chr1:110203925-110204322(+)$1	397	105	132	20.4327
CUCUGGUUGACCUUACAAAAACCAUUG	chr3:186338867-186339083(+)$1	216	115	142	17.6438
GAUUGUGAUCUCUUUAUCCUGUUUCCC	chr17:37009220-37009425(-)$1	205	22	49	19.8515
ucaccaccacccgaaaugccacguggu	chr11:838545-838806(+)$1	261	131	158	20.2248
GUCCGAGCACAAGCCAAGAAGUUUGCG	chr16:1374633-1374936(+)$1	303	125	152	20.8392
CCCUGGUGGCACAUAUCGAAUGCCUAG	chr17:79214860-79215147(+)$1	287	17	44	20.5346
CCCCUGGGGCGCAGAGACACCGGGUUG	chr14:105996094-105996360(+)$1	266	62	89	20.2201
GCGAUGUACAUAACUAUUUAAUGCAGC	chr19:12841581-12841826(-)$1	245	89	116	21.0620
GCUGGCCUCUAGAACACCCACUGGCCA	chr1:161192008-161192227(-)$1	219	62	89	20.5131
GUGGUUUUGUUUUGCUUUGUUUAAAGC	chr1:20978611-20978862(-)$1	251	52	79	18.4106
GAGAUUUGAAGGAAACAUGCACAAAUC	chr16:84087309-84087552(-)$1	243	25	52	20.1805
GCACAGGGAGGAGGUACAGAAGCCGGC	chr17:80196738-80196976(+)$1	238	135	162	19.8677
CGACCCACCUUUUGAAGUUCGUGGUGC	chrX:19377654-19377935(+)$1	281	56	83	20.9357
GCCCUCUCUGACUUUACCUUGAGAUCU	chr14:24774347-24774647(-)$1	300	160	187	20.9233
GGUGUCCGCUAUCCACCAAAAGGGCUC	chr11:57381901-57382264(+)$1	363	259	286	21.7509
CUAUUUAUAUAACAUUAGAUAAUUAAA	chr8:63927631-63927894(-)$1	263	146	173	19.2241
UUUUCUACCGGGAAUAUUUUAGAGAUU	chr7:1036741-1037012(-)$1	271	88	115	19.8480
CCCCACUCCCCCUUCGACAGCCAGUGG	chr17:36891473-36891754(-)$1	281	140	167	20.5131
CUUUCUCUUCCCCCACCCACUGUCCAC	chr14:65406389-65406617(-)$1	228	9	36	20.2591
CAGGGUGCAGAAUAGUUAAAGACACCU	chr5:140025095-140025364(-)$1	269	58	85	19.6098
GGGACCGUCUAGAAACACCAGGCCCAG	chr6:33739767-33740086(-)$1	319	227	254	18.7805

#DB
(((...(((...........)))...)	chr4:6698727-6698980(+)$1	1	210	237	18.1261
...((((((............))))))	chr3:183901583-183901840(+)$1	1	93	120	20.2218
.((((((..............))))))	chr19:10683301-10683555(-)$1	1	150	177	20.5742
((..(((..............)))..)	chr6:33257454-33257758(+)$1	1	188	215	23.0836
((((((((.............))))))	chr18:19209019-19209285(+)$1	1	135	162	21.1586
(((..................))))..	chr1:43391959-43392188(-)$1	1	20	47	19.6406
.((((((...................)	chr19:2732495-2732782(-)$1	1	219	246	19.4372
((...................))))))	chr3:184052904-184053165(+)$1	1	19	46	20.4356
(((.(((.............))).)))	chr19:1009930-1010247(-)$1	1	90	117	21.1762
(....................))))))	chr22:38072936-38073167(+)$1	1	127	154	20.2357
....(((...............)))..	chr19:13054820-13055033(+)$1	1	34	61	20.6012
...(((................)))..	chr16:58741877-58742185(-)$1	1	210	237	23.6463
(((.(((((...........))))).)	chr22:18218130-18218444(-)$1	1	42	69	18.0446
(((.(((..............))).))	chr19:1393142-1393428(+)$1	1	109	136	22.7368
(((((((..............))))))	chr6:31698297-31698537(-)$1	1	171	198	22.1622
(((((((....................	chr11:61633076-61633373(+)$1	1	56	83	19.5475
.(((((((.............))))))	chr14:103396930-103397206(+)$1	1	108	135	20.8745
(((((((................))))	chr1:156278806-156279084(-)$1	1	20	47	19.2241
((((((((.............))))))	chr5:176524694-176524945(+)$1	1	166	193	21.1586
(.(((((...............)))))	chr8:100899617-100899834(-)$1	1	105	132	20.3928
((((.((((...........)))).))	chr6:43483532-43483768(-)$1	1	17	44	17.6479
((...................))).))	chr16:31202728-31202976(+)$1	1	93	120	19.8826
(...(((....................	chr15:40765087-40765338(+)$1	1	94	121	20.3198
((.(((((.............))))).	chr14:94770634-94770927(-)$1	1	245	272	20.8299
.((((((..............))))))	chr17:7215041-7215244(+)$1	1	4	31	20.5742
((((((...............))))))	chr11:67379814-67380064(+)$1	1	209	236	19.4766
.((((((...............)))))	chr1:109856454-109856717(-)$1	1	89	116	19.9119
((...................))))..	chr11:62382728-62382990(-)$1	1	58	85	20.1355
.((((((....................	chr3:133495963-133496171(+)$1	1	48	75	19.3895
....(((..................))	chr11:62656037-62656344(+)$1	1	138	165	20.6099
((...................))))((	chr17:41151923-41152149(+)$1	1	39	66	19.6235
((.(((...............))))))	chr20:33128294-33128577(+)$1	1	227	254	20.4204
(....................))))((	chr19:56206603-56206885(+)$1	1	22	49	19.8054
.(..(((..............)))..)	chr19:39220100-39220335(+)$1	1	194	221	23.3518
...((((..............))))))	chr6:33243536-33243757(+)$1	1	66	93	21.9803
.(((((................)))))	chr12:6840383-6840633(+)$1	1	62	89	22.3504
.(((((................)))))	chr20:18724731-18725010(+)$1	1	10	37	22.3034
.((((((...............)))))	chr11:76508910-76509164(+)$1	1	18	45	19.9947
.((((((...............)))))	chr2:27293478-27293689(-)$1	1	134	161	19.9119
.....................))))))	chr17:39958361-39958622(-)$1	1	76	103	20.2591
(((.(((((............))))))	chr7:150773327-150773629(+)$1	1	178	205	20.0511
((..(((..(...........)..)))	chr1:40538868-40539140(-)$1	1	171	198	18.1518
..(((((.............)))))..	chr11:75511595-75511890(+)$1	1	50	77	21.4095
.....................)))..)	chr19:12841378-12841661(-)$1	1	157	184	20.4425
..((((................)))))	chr2:27664677-27664969(+)$1	1	185	212	18.8403
(...((((...........))))...)	chr12:9220253-9220463(-)$1	1	111	138	18.0658
..........................)	chr16:2569679-2569938(+)$1	1	37	64	20.4327
(...(((...........)))...)))	chr11:66044412-66044677(+)$1	1	228	255	18.0316
(...(((............))).))))	chr17:61908605-61908858(+)$1	1	47	74	21.0506
.((...................))...	chr20:30156961-30157253(+)$1	1	30	57	19.7575
(((((.(((............)))...	chr19:5894675-5894908(-)$1	1	63	90	21.0663
..........................)	chr1:110203925-110204322(+)$1	1	105	132	20.4327
(..(((((...........)))))..)	chr3:186338867-186339083(+)$1	1	115	142	17.6438
...((((....................	chr17:37009220-37009425(-)$1	1	22	49	19.8515
(.(((((...............)))))	chr11:838545-838806(+)$1	1	131	158	20.2248
((.(((((............))))).)	chr16:1374633-1374936(+)$1	1	125	152	20.8392
((..((((............))))..)	chr17:79214860-79215147(+)$1	1	17	44	20.5346
(((((((............)))))..)	chr14:105996094-105996360(+)$1	1	62	89	20.2201
((..((((.............))))..	chr19:12841581-12841826(-)$1	1	89	116	21.0620
(((((((...............)))))	chr1:161192008-161192227(-)$1	1	62	89	20.5131
..(((((((............))))))	chr1:20978611-20978862(-)$1	1	52	79	18.4106
((((((((.............))))))	chr16:84087309-84087552(-)$1	1	25	52	20.1805
.....................))))))	chr17:80196738-80196976(+)$1	1	135	162	19.8677
((..((((............)))))))	chrX:19377654-19377935(+)$1	1	56	83	20.9357
(...((((............)))).))	chr14:24774347-24774647(-)$1	1	160	187	20.9233
((.((((..............))))..	chr11:57381901-57382264(+)$1	1	259	286	21.7509
(((((((................))))	chr8:63927631-63927894(-)$1	1	146	173	19.2241
.((((((............))))))..	chr7:1036741-1037012(-)$1	1	88	115	19.8480
(((((((...............)))))	chr17:36891473-36891754(-)$1	1	140	167	20.5131
.....................))))))	chr14:65406389-65406617(-)$1	1	9	36	20.2591
..((((((............).)))))	chr5:140025095-140025364(-)$1	1	58	85	19.6098
(((.((..............)))))..	chr6:33739767-33740086(-)$1	1	227	254	18.7805

#PSSM
c : 0.13	d : 0.11	" : 0.08	g : 0.08	e : 0.08	^ : 0.08	: : 0.06	# : 0.06	= : 0.05	! : 0.05	f : 0.05	[ : 0.04	h : 0.02	i : 0.01	b : 0.01	G : 0.01	
" : 0.12	f : 0.12	c : 0.11	^ : 0.11	d : 0.09	g : 0.09	e : 0.08	= : 0.05	# : 0.04	: : 0.04	h : 0.02	[ : 0.02	i : 0.01	a : 0.01	b : 0.01	! : 0.01	
^ : 0.16	f : 0.12	" : 0.11	e : 0.11	! : 0.09	g : 0.08	d : 0.05	c : 0.05	[ : 0.05	= : 0.04	# : 0.04	h : 0.02	i : 0.01	b : 0.01	
^ : 0.19	e : 0.15	f : 0.13	" : 0.08	! : 0.08	g : 0.08	[ : 0.06	d : 0.05	= : 0.04	# : 0.02	c : 0.02	h : 0.02	i : 0.01	
^ : 0.19	e : 0.18	c : 0.16	f : 0.13	d : 0.12	g : 0.08	= : 0.02	h : 0.02	" : 0.01	i : 0.01	[ : 0.01	b : 0.01	
^ : 0.19	c : 0.16	e : 0.16	f : 0.13	d : 0.13	g : 0.08	= : 0.02	h : 0.02	" : 0.01	i : 0.01	[ : 0.01	b : 0.01	
^ : 0.19	c : 0.16	e : 0.13	f : 0.12	d : 0.12	g : 0.08	y : 0.05	= : 0.02	h : 0.02	x : 0.02	i : 0.01	w : 0.01	
^ : 0.27	x : 0.13	w : 0.12	y : 0.08	d : 0.08	e : 0.06	g : 0.04	u : 0.04	c : 0.02	= : 0.02	v : 0.02	f : 0.01	! : 0.01	t : 0.01	a : 0.01	
^ : 0.27	x : 0.13	w : 0.12	v : 0.11	u : 0.11	y : 0.08	t : 0.04	c : 0.02	e : 0.02	f : 0.01	d : 0.01	! : 0.01	g : 0.01	
^ : 0.27	u : 0.16	x : 0.13	w : 0.12	v : 0.11	t : 0.08	y : 0.08	a : 0.01	
^ : 0.27	u : 0.16	x : 0.13	w : 0.12	v : 0.11	t : 0.09	y : 0.08	
^ : 0.27	u : 0.16	x : 0.13	w : 0.12	v : 0.11	t : 0.09	y : 0.08	
^ : 0.27	u : 0.16	x : 0.13	w : 0.12	v : 0.11	t : 0.09	y : 0.08	
^ : 0.27	u : 0.16	x : 0.13	w : 0.12	v : 0.11	t : 0.09	y : 0.08	
^ : 0.27	u : 0.16	x : 0.13	w : 0.12	v : 0.11	t : 0.09	y : 0.08	
^ : 0.27	u : 0.16	x : 0.13	w : 0.12	v : 0.11	t : 0.09	y : 0.08	
^ : 0.27	u : 0.16	x : 0.13	w : 0.12	v : 0.11	t : 0.09	y : 0.08	
^ : 0.27	u : 0.16	x : 0.13	w : 0.12	v : 0.11	t : 0.09	y : 0.08	
^ : 0.27	u : 0.16	x : 0.13	w : 0.12	v : 0.11	t : 0.08	y : 0.08	c : 0.01	
^ : 0.27	x : 0.13	u : 0.12	w : 0.12	v : 0.11	y : 0.08	t : 0.05	c : 0.02	e : 0.02	d : 0.01	f : 0.01	
^ : 0.27	x : 0.13	w : 0.11	v : 0.08	y : 0.08	e : 0.06	d : 0.06	c : 0.05	u : 0.05	t : 0.01	f : 0.01	a : 0.01	b : 0.01	
d : 0.16	c : 0.13	^ : 0.12	x : 0.11	g : 0.09	e : 0.09	f : 0.08	y : 0.08	= : 0.04	a : 0.01	3 : 0.01	] : 0.01	b : 0.01	
d : 0.18	c : 0.16	e : 0.16	f : 0.12	g : 0.12	^ : 0.11	= : 0.04	y : 0.02	2 : 0.01	3 : 0.01	] : 0.01	b : 0.01	
e : 0.18	d : 0.16	c : 0.13	f : 0.12	g : 0.12	^ : 0.11	3 : 0.04	= : 0.04	h : 0.02	] : 0.01	2 : 0.01	b : 0.01	
e : 0.16	f : 0.12	g : 0.12	d : 0.11	^ : 0.11	c : 0.09	2 : 0.08	] : 0.05	3 : 0.04	= : 0.04	h : 0.02	4 : 0.01	
e : 0.15	f : 0.12	g : 0.12	3 : 0.11	2 : 0.09	^ : 0.09	c : 0.08	= : 0.05	4 : 0.02	] : 0.02	h : 0.02	d : 0.02	7 : 0.01	b : 0.01	: : 0.01	
f : 0.15	e : 0.13	c : 0.12	g : 0.12	3 : 0.08	d : 0.05	= : 0.05	^ : 0.05	a : 0.05	4 : 0.02	h : 0.02	b : 0.02	2 : 0.02	7 : 0.01	D : 0.01	: : 0.01	

#score	1460.1855019746517
#seq	72
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_UTR_m2_run1.txt

#BEAR
=========nnnnn=========	chr19:12811697-12811957(-)$1	260	48	71	14.2306
!!gggggggnnnnnggggggg22	chr2:17722204-17722558(+)$1	354	33	56	12.9892
f[gggggggnnnnnggggggg]f	chr2:219524404-219524712(+)$1	308	166	189	12.7575
e[bb!!a[annnnna]a333bbe	chr1:153921189-153921435(-)$1	246	7	30	12.0410
ggggggg[ccclllccc]ggggg	chr10:102265627-102265880(-)$1	253	123	146	8.8423
d"""eeeeennnnneeeee22dd	chr16:87738790-87739094(-)$1	304	109	132	11.1687
[bb[a[cccnnnnnccc]a]bb]	chr19:2096698-2096964(+)$1	266	93	116	12.2229
a[eeeee[annnnna]eeeee]a	chr19:972853-973131(+)$1	278	163	186	12.0428
==========lll==========	chr20:25433751-25434037(-)$1	286	190	213	10.5042
[eeeee[bbnnnnnbb]eeeee]	chr20:307479-307790(-)$1	311	93	116	11.1437
eeee[ddddnnnnnddddeeeee	chr11:65325390-65325709(-)$1	319	219	242	10.8863
eeeeeeebbnnnnnbb]eeeee3	chr11:791025-791310(-)$1	285	231	254	10.8318
ddgggggggnnnnnggggggg22	chr22:38202303-38202541(+)$1	238	126	149	12.2554
ffff!!cccnnnnnccc333fff	chr20:61438408-61438718(+)$1	310	42	65	12.2582
iiiiiii[annnnna]iiiiiii	chr22:25005474-25005716(+)$1	242	8	31	13.3670
!!ccc!!bbnnnnnbb22ccc22	chr7:6500839-6501183(-)$1	344	223	246	11.0691
!!iiiiiiiiillliiiiiiiii	chr2:74601677-74601966(-)$1	289	207	230	9.6246
f[gggggggnnnnnggggggg]f	chr8:494744-495075(-)$1	331	91	114	12.7575
###dddd[annnnna]dddd333	chr17:61909422-61909703(-)$1	281	101	124	11.7014
eeeee[cccnnnnnccceeeeeb	chr19:10464218-10464570(-)$1	352	241	264	11.8011
""gggggggnnnnnggggggg33	chr2:54889134-54889445(+)$1	311	33	56	13.3105
=========nnnnn=========	chr14:103801514-103801804(+)$1	290	104	127	14.2306
e####ddddnnnnndddd22eee	chr9:95477072-95477323(-)$1	251	91	114	11.2584
==========lll==========	chr20:48250695-48250962(-)$1	267	235	258	10.5042
eeee[ddddnnnnndddd]eeee	chr17:80207672-80207892(-)$1	220	170	193	11.0240
[eeeeecccnnnnnccc22eeee	chr17:7080809-7081061(-)$1	252	198	221	12.1687
dddd!!cccnnnnnccc22dddd	chr6:36098133-36098453(+)$1	320	259	282	11.4589
iiiiiiiiinnnnniiiiiiiii	chr20:23356290-23356551(-)$1	261	160	183	13.4303
ggggggggg[allla]ggggggg	chr19:58991403-58991629(-)$1	226	139	162	9.0086
bb[a[ddddnnnnndddd22a]b	chr17:74261729-74262071(+)$1	342	305	328	10.6048
eeee"""bbnnnnnbb333eeee	chr17:73851115-73851362(-)$1	247	197	220	11.2597
[bb[a[cccnnnnnccc]a]bb]	chr19:2096764-2097047(+)$1	283	27	50	12.2229
ccc[a[cccnnnnnccc]a]ccc	chr11:208949-209282(+)$1	333	1	24	12.4726
eee!!ddddnnnnndddd]eeee	chr17:4851332-4851626(-)$1	294	163	186	11.2214
[a!!eeeeennnnneeeee22af	chr7:155571497-155571779(+)$1	282	127	150	11.5008
!!gggggggnnnnnggggggg]b	chr2:98272620-98272876(-)$1	256	83	106	12.9316
###bb[cccnnnnncccbb4444	chr13:115000276-115000543(+)$1	267	232	255	11.4538
c[dddd!!annnnna22dddd]c	chr19:40786576-40786839(-)$1	263	18	41	10.6955
!eeeeea[annnnna]a]eeeee	chr12:132635294-132635554(+)$1	260	209	232	12.0326
$$gggggggnnnnnggggggg22	chr6:13574870-13575158(+)$1	288	218	241	12.3903
===========lll=========	chr17:80207640-80207872(-)$1	232	168	191	10.5279
==========lll==========	chr2:118867073-118867367(+)$1	294	28	51	10.5042
=========nnnnn=========	chr16:30134173-30134440(-)$1	267	241	264	14.2306
""bb[ddddnnnnndddd]bb22	chr17:39976083-39976338(+)$1	255	164	187	10.5990
gggggggccclllccc333gggg	chr19:50817533-50817813(-)$1	280	166	189	8.8825
[bb"""cccnnnnnccc333bb]	chr6:33588884-33589209(+)$1	325	207	230	12.4482
dddd!!cccnnnnnccc22dddd	chr17:41621481-41621764(-)$1	283	173	196	11.4589
iiiiii!!ccclllccc22iiii	chr7:5569503-5569794(-)$1	291	259	282	9.0736
d!!ffffffnnnnnffffffddd	chr9:139917973-139918252(-)$1	279	162	185	10.2007
ffffffcccnnnnnccc]fffff	chr3:184062808-184063103(+)$1	295	246	269	11.0338
========oooooo=========	chr17:79991705-79992036(+)$1	331	260	283	10.2405
b"""eeeeennnnneeeee22bb	chr19:11546467-11546778(+)$1	311	171	194	10.7698
=========nnnnn=========	chr2:242707587-242707870(+)$1	283	34	57	14.2306
edddd[cccnnnnnccc]dddd8	chr19:18547842-18548100(-)$1	258	168	191	10.8619
c"""eeeeennnnneeeeeccc]	chr17:77082784-77083065(+)$1	281	185	208	11.6658
hhh[eeeeennnnneeeee]hhh	chr14:105849320-105849574(+)$1	254	8	31	10.6070
dd!!eeeeennnnneeeee22dd	chr7:100164283-100164559(+)$1	276	13	36	10.8671

#otherMatches

#Seq PSSM
ccACUUGCCCUCCUGGCAGGUGG	chr19:12811697-12811957(-)$1	260	48	71	14.2306
CUGUCAGAGAAAUGCUUUGGCUA	chr2:17722204-17722558(+)$1	354	33	56	12.9892
GGGGACGGGAGAGCUUUGUCUGU	chr2:219524404-219524712(+)$1	308	166	189	12.7575
GCUCCUCUCUUCCUGCGUUUGAC	chr1:153921189-153921435(-)$1	246	7	30	12.0410
UGUCUCUGUUUGUGGGAGAGAGA	chr10:102265627-102265880(-)$1	253	123	146	8.8423
GGAACCGUGGGAGACGCGGAACA	chr16:87738790-87739094(-)$1	304	109	132	11.1687
gcugggccugggauggggcgggg	chr19:2096698-2096964(+)$1	266	93	116	12.2229
UGACAGUGAAUUGCUGACUGUGA	chr19:972853-973131(+)$1	278	163	186	12.0428
UGGCAAAAUUCCCAGUUUUGCCA	chr20:25433751-25434037(-)$1	286	190	213	10.5042
GCCUUGGGGUGUGUCUGCGGGGG	chr20:307479-307790(-)$1	311	93	116	11.1437
ggcgcgggccccucgccccgccc	chr11:65325390-65325709(-)$1	319	219	242	10.8863
GAACUAACUUACCCAGCUUGGUC	chr11:791025-791310(-)$1	285	231	254	10.8318
UUGUUUGCCAUGAAGGUAGAUGU	chr22:38202303-38202541(+)$1	238	126	149	12.2554
CUUUAGUGUACAAAGCAGGGGGA	chr20:61438408-61438718(+)$1	310	42	65	12.2582
CCUGUGUGUGGGGAGGGCACAGG	chr22:25005474-25005716(+)$1	242	8	31	13.3670
UCUGGAAGCUCUGUGUAGCCAUU	chr7:6500839-6501183(-)$1	344	223	246	11.0691
GCCAGGCACCGCUCCGGUGCCUG	chr2:74601677-74601966(-)$1	289	207	230	9.6246
gguucuggggaugguuugggggc	chr8:494744-495075(-)$1	331	91	114	12.7575
AGGUAUGGGGUAUGUGCAUGUGG	chr17:61909422-61909703(-)$1	281	101	124	11.7014
GCGGCAGGCGAGAAGUCGCUGCA	chr19:10464218-10464570(-)$1	352	241	264	11.8011
UUGAAUACCAAUCAGGUGUUUUC	chr2:54889134-54889445(+)$1	311	33	56	13.3105
UGCUUAUCCAGGCGGGGUGGGCG	chr14:103801514-103801804(+)$1	290	104	127	14.2306
GCACCCAGUCCUCAGCUGCUCUC	chr9:95477072-95477323(-)$1	251	91	114	11.2584
uuuuguuCUUUUGAAGAAUAGAG	chr20:48250695-48250962(-)$1	267	235	258	10.5042
AGAUGCCAUGGCGAGUGGGGUUU	chr17:80207672-80207892(-)$1	220	170	193	11.0240
UGGGGCGGCUCAGCGCUUAGCCC	chr17:7080809-7081061(-)$1	252	198	221	12.1687
CAGGACGUCAACAAGACAGCCUG	chr6:36098133-36098453(+)$1	320	259	282	11.4589
GGACUACAGGUGCACUGUAGUCC	chr20:23356290-23356551(-)$1	261	160	183	13.4303
AGGCUUGUGGCCGUGGCACAAGC	chr19:58991403-58991629(-)$1	226	139	162	9.0086
CCACCACCACCAGAUGGUAAgcg	chr17:74261729-74262071(+)$1	342	305	328	10.6048
GGGUGGGCCGUGGGGGAGAGCCC	chr17:73851115-73851362(-)$1	247	197	220	11.2597
gcugggccugggauggggcgggg	chr19:2096764-2097047(+)$1	283	27	50	12.2229
CUGAGGCCGGGGGGCGGGCACGG	chr11:208949-209282(+)$1	333	1	24	12.4726
GAGAGGCCCUGACUGGGUGCUUG	chr17:4851332-4851626(-)$1	294	163	186	11.2214
AGUCCUAGAAACUCUCUAGUCCC	chr7:155571497-155571779(+)$1	282	127	150	11.5008
UCCAUCCCCAGCAAGGGGGUGCA	chr2:98272620-98272876(-)$1	256	83	106	12.9316
GAGGCGCGCGCCUAGCGGCGGAG	chr13:115000276-115000543(+)$1	267	232	255	11.4538
cagguuaauaagcaaggagccgg	chr19:40786576-40786839(-)$1	263	18	41	10.6955
GCCUGUGUCUGUCUGUCUGCAGG	chr12:132635294-132635554(+)$1	260	209	232	12.0326
GGGGAGCCCCGCGAGGGCUCCGA	chr6:13574870-13575158(+)$1	288	218	241	12.3903
GGUUUUUUCGAUUGUUGGGGGAG	chr17:80207640-80207872(-)$1	232	168	191	10.5279
CCAUUAGUUUUUGAAAUUGGUGG	chr2:118867073-118867367(+)$1	294	28	51	10.5042
GUGCUUUCUGGGGGAGGGGGCGC	chr16:30134173-30134440(-)$1	267	241	264	14.2306
aagugggcaagccaugcugaucc	chr17:39976083-39976338(+)$1	255	164	187	10.5990
GGGCUGGCCUUUAAGGUCUCCAG	chr19:50817533-50817813(-)$1	280	166	189	8.8825
UGGCCCCAGACUUCCUGCUCCUU	chr6:33588884-33589209(+)$1	325	207	230	12.4482
GAGGUUUCCUGGUUGGAUUCUUC	chr17:41621481-41621764(-)$1	283	173	196	11.4589
CGGGCGGAGGCGGGGCUGGCGCC	chr7:5569503-5569794(-)$1	291	259	282	9.0736
UAAAGGCACAGCUGGUGCCUGGG	chr9:139917973-139918252(-)$1	279	162	185	10.2007
CACAUUUCCUCCUCGGAUAAUGU	chr3:184062808-184063103(+)$1	295	246	269	11.0338
GGAAGCCCCAGGAUGGGCUUCCC	chr17:79991705-79992036(+)$1	331	260	283	10.2405
CGGGAAUUGGGUCACAAUUGGGC	chr19:11546467-11546778(+)$1	311	171	194	10.7698
CCAUCCUGGACAGGCCGGGGUGG	chr2:242707587-242707870(+)$1	283	34	57	14.2306
UGUCUGCUGACCCCCAGGAGGCC	chr19:18547842-18548100(-)$1	258	168	191	10.8619
GUGUGGAAGGCCCUUUUCCCUGA	chr17:77082784-77083065(+)$1	281	185	208	11.6658
GGGGCUAGGUGCGUCCUGGACCU	chr14:105849320-105849574(+)$1	254	8	31	10.6070
CAAUCAGGACCCCAUCCUGUCUG	chr7:100164283-100164559(+)$1	276	13	36	10.8671

#DB
(((((((((.....)))))))))	chr19:12811697-12811957(-)$1	1	48	71	14.2306
..(((((((.....)))))))..	chr2:17722204-17722558(+)$1	1	33	56	12.9892
(.(((((((.....))))))).)	chr2:219524404-219524712(+)$1	1	166	189	12.7575
(.((..(.(.....).)...)))	chr1:153921189-153921435(-)$1	1	7	30	12.0410
(((((((.(((...))).)))))	chr10:102265627-102265880(-)$1	1	123	146	8.8423
(...(((((.....)))))..))	chr16:87738790-87739094(-)$1	1	109	132	11.1687
.((.(.(((.....))).).)).	chr19:2096698-2096964(+)$1	1	93	116	12.2229
(.(((((.(.....).))))).)	chr19:972853-973131(+)$1	1	163	186	12.0428
((((((((((...))))))))))	chr20:25433751-25434037(-)$1	1	190	213	10.5042
.(((((.((.....)).))))).	chr20:307479-307790(-)$1	1	93	116	11.1437
((((.((((.....)))))))))	chr11:65325390-65325709(-)$1	1	219	242	10.8863
(((((((((.....)).))))).	chr11:791025-791310(-)$1	1	231	254	10.8318
(((((((((.....)))))))..	chr22:38202303-38202541(+)$1	1	126	149	12.2554
((((..(((.....)))...)))	chr20:61438408-61438718(+)$1	1	42	65	12.2582
(((((((.(.....).)))))))	chr22:25005474-25005716(+)$1	1	8	31	13.3670
..(((..((.....))..)))..	chr7:6500839-6501183(-)$1	1	223	246	11.0691
..(((((((((...)))))))))	chr2:74601677-74601966(-)$1	1	207	230	9.6246
(.(((((((.....))))))).)	chr8:494744-495075(-)$1	1	91	114	12.7575
...((((.(.....).))))...	chr17:61909422-61909703(-)$1	1	101	124	11.7014
(((((.(((.....))))))))(	chr19:10464218-10464570(-)$1	1	241	264	11.8011
..(((((((.....)))))))..	chr2:54889134-54889445(+)$1	1	33	56	13.3105
(((((((((.....)))))))))	chr14:103801514-103801804(+)$1	1	104	127	14.2306
(....((((.....))))..)))	chr9:95477072-95477323(-)$1	1	91	114	11.2584
((((((((((...))))))))))	chr20:48250695-48250962(-)$1	1	235	258	10.5042
((((.((((.....)))).))))	chr17:80207672-80207892(-)$1	1	170	193	11.0240
.((((((((.....)))..))))	chr17:7080809-7081061(-)$1	1	198	221	12.1687
((((..(((.....)))..))))	chr6:36098133-36098453(+)$1	1	259	282	11.4589
(((((((((.....)))))))))	chr20:23356290-23356551(-)$1	1	160	183	13.4303
))(((((((.(...).)))))))	chr19:58991403-58991629(-)$1	1	139	162	9.0086
((.(.((((.....))))..).)	chr17:74261729-74262071(+)$1	1	305	328	10.6048
((((...((.....))...))))	chr17:73851115-73851362(-)$1	1	197	220	11.2597
.((.(.(((.....))).).)).	chr19:2096764-2097047(+)$1	1	27	50	12.2229
(((.(.(((.....))).).)))	chr11:208949-209282(+)$1	1	1	24	12.4726
(((..((((.....)))).))))	chr17:4851332-4851626(-)$1	1	163	186	11.2214
.(..(((((.....)))))..))	chr7:155571497-155571779(+)$1	1	127	150	11.5008
..(((((((.....))))))).)	chr2:98272620-98272876(-)$1	1	83	106	12.9316
...((.(((.....)))))....	chr13:115000276-115000543(+)$1	1	232	255	11.4538
(.((((..(.....)..)))).)	chr19:40786576-40786839(-)$1	1	18	41	10.6955
.((((((.(.....).).)))))	chr12:132635294-132635554(+)$1	1	209	232	12.0326
..(((((((.....)))))))..	chr6:13574870-13575158(+)$1	1	218	241	12.3903
(((((((((((...)))))))))	chr17:80207640-80207872(-)$1	1	168	191	10.5279
((((((((((...))))))))))	chr2:118867073-118867367(+)$1	1	28	51	10.5042
(((((((((.....)))))))))	chr16:30134173-30134440(-)$1	1	241	264	14.2306
..((.((((.....)))).))..	chr17:39976083-39976338(+)$1	1	164	187	10.5990
((((((((((...)))...))))	chr19:50817533-50817813(-)$1	1	166	189	8.8825
.((...(((.....)))...)).	chr6:33588884-33589209(+)$1	1	207	230	12.4482
((((..(((.....)))..))))	chr17:41621481-41621764(-)$1	1	173	196	11.4589
((((((..(((...)))..))))	chr7:5569503-5569794(-)$1	1	259	282	9.0736
(..((((((.....)))))))))	chr9:139917973-139918252(-)$1	1	162	185	10.2007
(((((((((.....))).)))))	chr3:184062808-184063103(+)$1	1	246	269	11.0338
((((((((......)))))))))	chr17:79991705-79992036(+)$1	1	260	283	10.2405
(...(((((.....)))))..))	chr19:11546467-11546778(+)$1	1	171	194	10.7698
(((((((((.....)))))))))	chr2:242707587-242707870(+)$1	1	34	57	14.2306
(((((.(((.....))).)))).	chr19:18547842-18548100(-)$1	1	168	191	10.8619
(...(((((.....)))))))).	chr17:77082784-77083065(+)$1	1	185	208	11.6658
(((.(((((.....))))).)))	chr14:105849320-105849574(+)$1	1	8	31	10.6070
((..(((((.....)))))..))	chr7:100164283-100164559(+)$1	1	13	36	10.8671

#PSSM
= : 0.15	e : 0.15	d : 0.10	[ : 0.10	! : 0.08	f : 0.07	g : 0.05	i : 0.05	c : 0.05	# : 0.03	" : 0.03	b : 0.03	a : 0.01	$ : 0.01	h : 0.01	
= : 0.15	e : 0.15	! : 0.08	[ : 0.08	" : 0.08	d : 0.08	b : 0.07	g : 0.05	i : 0.05	# : 0.05	f : 0.03	c : 0.01	a : 0.01	$ : 0.01	h : 0.01	
g : 0.17	e : 0.17	= : 0.15	b : 0.08	i : 0.07	d : 0.07	" : 0.05	# : 0.05	! : 0.05	f : 0.03	c : 0.03	[ : 0.01	h : 0.01	
g : 0.17	= : 0.15	e : 0.15	d : 0.08	" : 0.07	[ : 0.07	i : 0.07	b : 0.05	f : 0.05	! : 0.05	c : 0.01	# : 0.01	a : 0.01	
e : 0.21	g : 0.17	= : 0.15	! : 0.08	[ : 0.07	i : 0.07	a : 0.05	d : 0.05	" : 0.03	f : 0.03	c : 0.01	# : 0.01	b : 0.01	
e : 0.19	g : 0.17	= : 0.15	d : 0.14	[ : 0.10	! : 0.08	i : 0.07	" : 0.03	f : 0.03	
c : 0.21	g : 0.17	= : 0.15	e : 0.14	d : 0.12	i : 0.05	! : 0.05	a : 0.03	[ : 0.01	" : 0.01	f : 0.01	
c : 0.22	= : 0.15	g : 0.14	[ : 0.10	e : 0.10	d : 0.10	b : 0.07	i : 0.03	! : 0.03	f : 0.01	
c : 0.26	= : 0.14	g : 0.14	a : 0.10	e : 0.10	d : 0.10	b : 0.07	i : 0.03	f : 0.01	o : 0.01	
n : 0.82	= : 0.07	c : 0.05	i : 0.01	[ : 0.01	o : 0.01	
n : 0.82	l : 0.07	c : 0.03	i : 0.01	a : 0.01	= : 0.01	o : 0.01	
n : 0.82	l : 0.15	o : 0.01	
n : 0.82	l : 0.15	o : 0.01	
n : 0.82	l : 0.08	= : 0.05	c : 0.01	o : 0.01	
c : 0.26	= : 0.15	g : 0.12	a : 0.12	e : 0.10	d : 0.10	b : 0.07	i : 0.03	f : 0.01	
c : 0.26	= : 0.15	g : 0.12	] : 0.10	e : 0.10	d : 0.10	b : 0.07	i : 0.03	2 : 0.01	f : 0.01	
c : 0.24	= : 0.15	g : 0.14	e : 0.12	d : 0.12	i : 0.05	a : 0.03	] : 0.03	2 : 0.03	3 : 0.03	f : 0.01	
e : 0.17	= : 0.15	g : 0.14	d : 0.14	] : 0.12	3 : 0.08	2 : 0.08	i : 0.05	b : 0.01	f : 0.01	
e : 0.21	= : 0.15	g : 0.15	2 : 0.10	3 : 0.08	a : 0.05	i : 0.05	d : 0.05	] : 0.05	f : 0.03	c : 0.01	b : 0.01	
g : 0.17	e : 0.17	= : 0.15	2 : 0.10	d : 0.08	] : 0.07	i : 0.07	3 : 0.05	c : 0.03	f : 0.03	4 : 0.01	b : 0.01	
e : 0.19	g : 0.17	= : 0.15	b : 0.08	d : 0.08	2 : 0.07	i : 0.07	c : 0.05	f : 0.03	3 : 0.01	a : 0.01	4 : 0.01	h : 0.01	
e : 0.17	= : 0.15	] : 0.10	d : 0.10	2 : 0.08	b : 0.08	i : 0.07	g : 0.05	f : 0.03	3 : 0.03	c : 0.03	a : 0.01	4 : 0.01	h : 0.01	
= : 0.15	e : 0.14	2 : 0.08	f : 0.08	d : 0.08	] : 0.08	i : 0.07	b : 0.07	g : 0.05	3 : 0.05	c : 0.03	a : 0.01	4 : 0.01	8 : 0.01	h : 0.01	

#score	657.8806609695652
#seq	57
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_transcript_m2_run2.txt

#BEAR
Dffffffuuuuuuuuuuuuffffff:	chr19:2428912-2429164(-)$1	252	226	252	21.6026
!!eeeeewwwwwwwwwwwwwweeeee	chr15:72499367-72499580(-)$1	213	89	115	23.3527
[bb[cccvvvvvvvvvvvvvccc]bb	chr18:56066028-56066298(+)$1	270	236	262	23.3617
gggggggvvvvvvvvvvvvvgggggg	chr11:62285897-62286159(-)$1	262	218	244	24.1436
:ffffffuuuuuuuuuuuuffffffD	chr1:19490698-19490989(-)$1	291	2	28	21.6010
ggg!!bbvvvvvvvvvvvvvbb22gg	chr17:2603582-2603863(-)$1	281	92	118	23.3585
[bb!!bbwwwwwwwwwwwwwwbb22b	chr7:103301869-103302074(-)$1	205	129	155	21.7595
eeeeewwwwwwwwwwwwwweeeee:g	chr16:72110464-72110717(+)$1	253	0	26	21.1219
gggggggvvvvvvvvvvvvvgggggg	chr11:45833800-45834052(+)$1	252	94	120	24.1436
"""ddddwwwwwwwwwwwwwwddddd	chr6:33243510-33243760(+)$1	250	92	118	22.2426
[ffffffyyyyyyyyyyyyyyyyfff	chr1:92182023-92182284(-)$1	261	98	124	20.4654
ggggyyyyyyyyyyyyyyyygggggg	chr1:229657237-229657466(-)$1	229	167	193	20.7088
==eeeeeuuuuuuuuuuuueeeee]=	chr10:90983376-90983654(-)$1	278	228	254	24.2355
dddd[ccctttttttttttccc]ddd	chr2:97499087-97499345(+)$1	258	26	52	21.5674
ggggggguuuuuuuuuuuuggggggg	chr17:79804226-79804445(-)$1	219	89	115	23.8769
iiccc[bbtttttttttttbb]ccc]	chr2:223789103-223789373(+)$1	270	143	169	21.7803
###dddduuuuuuuuuuuudddd22b	chr8:62465487-62465777(-)$1	290	26	52	22.8922
eeee[bbuuuuuuuuuuuubb22eee	chr2:21246296-21246498(-)$1	202	104	130	22.7293
"eeeeevvvvvvvvvvvvveeeee33	chr12:110776985-110777213(+)$1	228	43	69	23.9312
Efffffftttttttttttffffffdd	chr1:55315516-55315757(-)$1	241	71	97	20.3831
"ffffffvvvvvvvvvvvvvffffff	chr8:144996611-144996872(-)$1	261	138	164	23.7814
!!eeeeeuuuuuuuuuuuueeeee44	chr14:94908746-94909042(-)$1	296	65	91	24.4492
"""ddddtttttttttttdddd333f	chr6:38121389-38121679(+)$1	290	128	154	21.6235
###ddddvvvvvvvvvvvvvdddd44	chrX:135957316-135957532(-)$1	216	43	69	23.4610
c[eeeeewwwwwwwwwwwwwweeeee	chr6:7565606-7565838(+)$1	232	100	126	23.0327
iiiiiiiuuuuuuuuuuuuiiiiiii	chr12:74934401-74934654(+)$1	253	73	99	23.6795
:eeeeevvvvvvvvvvvvveeeeeGG	chr2:135210815-135211071(+)$1	256	65	91	21.7734
###dddduuuuuuuuuuuudddd444	chr17:79804779-79805004(-)$1	225	24	50	23.2375
ee[bbwwwwwwwwwwwwwwbb]eeee	chr1:11083392-11083597(+)$1	205	145	171	20.8603
ddd!!bbwwwwwwwwwwwwwwbbddd	chr6:159049358-159049586(+)$1	228	85	111	21.4222
hhh!!ccctttttttttttccc22hh	chr2:55461970-55462185(+)$1	215	107	133	21.0851
hhhh[bbuuuuuuuuuuuubb]hhhh	chr3:48787904-48788159(-)$1	255	94	120	21.8127
ggggggguuuuuuuuuuuuggggggg	chr14:60756427-60756728(+)$1	301	166	192	23.8769
gggggggvvvvvvvvvvvvvgggggg	chr8:62593432-62593699(-)$1	267	97	123	24.1436
ddddccctttttttttttccc]dddd	chr4:22475295-22475551(-)$1	256	84	110	21.1022
##fffffftttttttttttffffff6	chr2:21234420-21234654(-)$1	234	69	95	21.8489
ccceeeeettttttttttteeeee]c	chr5:179155603-179155819(+)$1	216	121	147	22.4720
gggg[bbvvvvvvvvvvvvvbbgggg	chr2:21252681-21252894(-)$1	213	103	129	23.8104
cc[ddddvvvvvvvvvvvvvdddd]c	chr1:36366983-36367239(+)$1	256	109	135	23.3363
fffff[awwwwwwwwwwwwwwa]fff	chr17:26962450-26962722(-)$1	272	176	202	22.3794
!ccc[bbwwwwwwwwwwwwwwbb]cc	chr20:62589163-62589412(-)$1	249	159	185	22.5126
ff[ayyyyyyyyyyyyyyyyafffff	chr3:133473237-133473440(+)$1	203	107	133	20.1531
[ffffffwwwwwwwwwwwwwwfffff	chr16:67891249-67891509(+)$1	260	93	119	22.7805
fffff[bbtttttttttttbb]ffff	chr3:33133461-33133743(-)$1	282	108	134	21.5111
::eeeeeuuuuuuuuuuuueeeee::	chr2:21230971-21231210(-)$1	239	189	215	20.6387
ggg[cccyyyyyyyyyyyyyyyyccc	chr4:56283883-56284180(+)$1	297	188	214	20.6320
"eeeeevvvvvvvvvvvvveeeee33	chr22:41223036-41223297(-)$1	261	216	242	23.9312
eee[cccvvvvvvvvvvvvvccceee	chr6:34556388-34556641(-)$1	253	140	166	23.6575
[bb!!bbwwwwwwwwwwwwwwbb22b	chr7:103301791-103302019(-)$1	228	74	100	21.7595
Hccc[bbuuuuuuuuuuuubb]cccD	chr1:20980020-20980284(-)$1	264	29	55	21.8065
c!!eeeeettttttttttteeeee22	chr1:154574509-154574823(-)$1	314	284	310	22.4101
iiiiiiiitttttttttttiiiiiii	chr20:37193945-37194220(+)$1	275	86	112	21.9323
!!a[cccvvvvvvvvvvvvvccc]a2	chr4:74280653-74280859(+)$1	206	159	185	24.1662
g:fffffftttttttttttffffff:	chr10:33214702-33214953(-)$1	251	90	116	20.2649
=======wwwwwwwwwwwwww=====	chr12:51112485-51112702(+)$1	217	113	139	23.2362
::eeeeeuuuuuuuuuuuueeeee::	chr15:89740127-89740459(+)$1	332	43	69	20.6387
""eeeeeuuuuuuuuuuuueeeee33	chr5:102364525-102364798(+)$1	273	112	138	24.5719
'''dddduuuuuuuuuuuudddd888	chr4:57883175-57883443(+)$1	268	107	133	20.1976
[eeeeexxxxxxxxxxxxxxxeeeee	chr6:160490914-160491129(+)$1	215	126	152	18.6196
!ffffffvvvvvvvvvvvvvffffff	chr4:79350228-79350464(+)$1	236	5	31	23.8132
IIeeeeeuuuuuuuuuuuueeeee::	chr3:184023549-184023817(+)$1	268	8	34	20.1425

#otherMatches

#Seq PSSM
CCCACCCUACAUUUGCCUUGGGUGGA	chr19:2428912-2429164(-)$1	252	226	252	21.6026
AAGCCUGUCAUCUGUGCUACUCAGGC	chr15:72499367-72499580(-)$1	213	89	115	23.3527
CACUUACAUGAGGCUGAGAAGUACGU	chr18:56066028-56066298(+)$1	270	236	262	23.3617
UGCAUCUGUUCCCAGCAUGAAGGUGC	chr11:62285897-62286159(-)$1	262	218	244	24.1436
AGAAUGAGAUUCCUGUUGAUUAUUCA	chr1:19490698-19490989(-)$1	291	2	28	21.6010
CAGACCCGAGACUGGAAUGAGGAGCU	chr17:2603582-2603863(-)$1	281	92	118	23.3585
CAGAAUGUGGAACGAUAGAAUCAGGC	chr7:103301869-103302074(-)$1	205	129	155	21.7595
GUGGUUCUACACCCUAACUACCACCA	chr16:72110464-72110717(+)$1	253	0	26	21.1219
CAACCUUUACAUUCUUCCCUGAGGUU	chr11:45833800-45834052(+)$1	252	94	120	24.1436
GUUGAGGAAAGCAGACAUUGACCUCA	chr6:33243510-33243760(+)$1	250	92	118	22.2426
GAUUUCCGGGAGAUAUGGAUGAAGGA	chr1:92182023-92182284(-)$1	261	98	124	20.4654
UUAUUUUUAUUAGGGACCUUGUAAUU	chr1:229657237-229657466(-)$1	229	167	193	20.7088
AGUAAGAUUUGAUUUUUUUUUUUAUC	chr10:90983376-90983654(-)$1	278	228	254	24.2355
AGGGAUCGUCAUGCUGCAUCGAAUCC	chr2:97499087-97499345(+)$1	258	26	52	21.5674
GGCAGAGAGGAUCACAGAGUUCUGCC	chr17:79804226-79804445(-)$1	219	89	115	23.8769
UUAUUCUGGCCUAUAAUUACAAAAUG	chr2:223789103-223789373(+)$1	270	143	169	21.7803
AAGCUAUGUAAAUCAAUUAAUGGAAU	chr8:62465487-62465777(-)$1	290	26	52	22.8922
AAGAUUCUGUUUGCCUUUUGAUUUCU	chr2:21246296-21246498(-)$1	202	104	130	22.7293
agguaaaAAAGUUCAGAAAUUGCCAC	chr12:110776985-110777213(+)$1	228	43	69	23.9312
CCAUCCAUGUGAUGGUUUUGGAUGGA	chr1:55315516-55315757(-)$1	241	71	97	20.3831
CUGGAGCGUGAGAAGGAGAAGCUCCA	chr8:144996611-144996872(-)$1	261	138	164	23.7814
UCCUGGGAAAAGUUGUCAACCCAGUU	chr14:94908746-94909042(-)$1	296	65	91	24.4492
GGACAGGAUCAGGAUUCCCUUGAAAG	chr6:38121389-38121679(+)$1	290	128	154	21.6235
CACCACGAGAUUAUACUUACCGUGAU	chrX:135957316-135957532(-)$1	216	43	69	23.4610
GGAGCGACAAGAACACCAACAUCGCU	chr6:7565606-7565838(+)$1	232	100	126	23.0327
UACUUCCUAACAAUGUCUUGGAAGUG	chr12:74934401-74934654(+)$1	253	73	99	23.6795
UCAGCCCCCAAGGAAACAAGGCUGCA	chr2:135210815-135211071(+)$1	256	65	91	21.7734
CUCAGACCCAGUAACUUAAGUUUAUA	chr17:79804779-79805004(-)$1	225	24	50	23.2375
UGAGCGAGAAAAGGAGAGAGCGCGUG	chr1:11083392-11083597(+)$1	205	145	171	20.8603
GCCAUCCUUUAUUUGAGAUUUGGGGC	chr6:159049358-159049586(+)$1	228	85	111	21.4222
GCUGUCCUGAAAUAUUAUAAGGUGAG	chr2:55461970-55462185(+)$1	215	107	133	21.0851
AGAGGUUGUACUAUAAAGAGAGUUCU	chr3:48787904-48788159(-)$1	255	94	120	21.8127
CAUCCCCAGCCUCCCACCAGGGGGUG	chr14:60756427-60756728(+)$1	301	166	192	23.8769
AUUAUAGGAAAACUAGGAAUCUAUGA	chr8:62593432-62593699(-)$1	267	97	123	24.1436
GGAUUCUGAGUAACAAUAAGAUAUCC	chr4:22475295-22475551(-)$1	256	84	110	21.1022
CUGGGUGUCGACAGCAAAAACAUUUU	chr2:21234420-21234654(-)$1	234	69	95	21.8489
CUUAGGUUGACAUUCAGAAAACUUCA	chr5:179155603-179155819(+)$1	216	121	147	22.4720
UUACACCUAUUUGAUUCUGCGGGUAA	chr2:21252681-21252894(-)$1	213	103	129	23.8104
GGGCAGCGCUGUAUUAAAAAGCUGAC	chr1:36366983-36367239(+)$1	256	109	135	23.3363
CAGUGCCGAGACCUACUAAGAGCCAC	chr17:26962450-26962722(-)$1	272	176	202	22.3794
AGGAGCCGGAGGUGGAGGGUGGGGUC	chr20:62589163-62589412(-)$1	249	159	185	22.5126
AGACUUUCUAUUAUGCUGUUGCUGUG	chr3:133473237-133473440(+)$1	203	107	133	20.1531
GGGCUGAUUGCACUCCAUCCUUCAGC	chr16:67891249-67891509(+)$1	260	93	119	22.7805
CCAUGGUCGGUGAUGGUGAGAACAUG	chr3:33133461-33133743(-)$1	282	108	134	21.5111
CGCAACGAGAUCAAGACACUGUUGAA	chr2:21230971-21231210(-)$1	239	189	215	20.6387
GUUCAAGCUCUUACAUUAACAUUCUU	chr4:56283883-56284180(+)$1	297	188	214	20.6320
ACUUUGGACUUUGUAUCAUUAAGGCA	chr22:41223036-41223297(-)$1	261	216	242	23.9312
AGCCUGCUGAGAAGCGUGGUGCAGCU	chr6:34556388-34556641(-)$1	253	140	166	23.6575
CAGAAUGUGGAACGAUAGAAUCAGGC	chr7:103301791-103302019(-)$1	228	74	100	21.7595
AGGCAACUAUGAACUAGCUGUGGCCC	chr1:20980020-20980284(-)$1	264	29	55	21.8065
UUUGUGGAAAAUCGCGGUCUCCACUC	chr1:154574509-154574823(-)$1	314	284	310	22.4101
GCAUUUUCAAUGGACAGAAGAAGGUG	chr20:37193945-37194220(+)$1	275	86	112	21.9323
GCCAAGACAUAUGAAACCACUCUAGA	chr4:74280653-74280859(+)$1	206	159	185	24.1662
UAUCUGGAAAUUUGGAUUCUCCAGAA	chr10:33214702-33214953(-)$1	251	90	116	20.2649
AAGGUAAGUGUUCCUGAAGUGUUACC	chr12:51112485-51112702(+)$1	217	113	139	23.2362
AUGAGUAAAAUUGCCUGGAUACUUUA	chr15:89740127-89740459(+)$1	332	43	69	20.6387
AAGGGCUACAGUCGAAAAGGGUUUGA	chr5:102364525-102364798(+)$1	273	112	138	24.5719
UGACUCCAGAUGAUUUACAGGAGAAA	chr4:57883175-57883443(+)$1	268	107	133	20.1976
UUCGGAAAAAGUCAACCACCAUCCGA	chr6:160490914-160491129(+)$1	215	126	152	18.6196
AUUUAUCCUUUUUAGUUUCAGAUGGA	chr4:79350228-79350464(+)$1	236	5	31	23.8132
GGCAGGUGUCACAGCUUUAGCCUGUG	chr3:184023549-184023817(+)$1	268	8	34	20.1425

#DB
)((((((............)))))).	chr19:2428912-2429164(-)$1	1	226	252	21.6026
..(((((..............)))))	chr15:72499367-72499580(-)$1	1	89	115	23.3527
.((.(((.............))).))	chr18:56066028-56066298(+)$1	1	236	262	23.3617
(((((((.............))))))	chr11:62285897-62286159(-)$1	1	218	244	24.1436
.((((((............))))))(	chr1:19490698-19490989(-)$1	1	2	28	21.6010
(((..((.............))..))	chr17:2603582-2603863(-)$1	1	92	118	23.3585
.((..((..............))..)	chr7:103301869-103302074(-)$1	1	129	155	21.7595
(((((..............))))).(	chr16:72110464-72110717(+)$1	1	0	26	21.1219
(((((((.............))))))	chr11:45833800-45834052(+)$1	1	94	120	24.1436
...((((..............)))))	chr6:33243510-33243760(+)$1	1	92	118	22.2426
.((((((................)))	chr1:92182023-92182284(-)$1	1	98	124	20.4654
((((................))))))	chr1:229657237-229657466(-)$1	1	167	193	20.7088
(((((((............))))).)	chr10:90983376-90983654(-)$1	1	228	254	24.2355
((((.(((...........))).)))	chr2:97499087-97499345(+)$1	1	26	52	21.5674
(((((((............)))))))	chr17:79804226-79804445(-)$1	1	89	115	23.8769
(((((.((...........)).))).	chr2:223789103-223789373(+)$1	1	143	169	21.7803
...((((............))))..)	chr8:62465487-62465777(-)$1	1	26	52	22.8922
((((.((............))..)))	chr2:21246296-21246498(-)$1	1	104	130	22.7293
.(((((.............)))))..	chr12:110776985-110777213(+)$1	1	43	69	23.9312
(((((((...........))))))((	chr1:55315516-55315757(-)$1	1	71	97	20.3831
.((((((.............))))))	chr8:144996611-144996872(-)$1	1	138	164	23.7814
..(((((............)))))..	chr14:94908746-94909042(-)$1	1	65	91	24.4492
...((((...........))))...)	chr6:38121389-38121679(+)$1	1	128	154	21.6235
...((((.............))))..	chrX:135957316-135957532(-)$1	1	43	69	23.4610
(.(((((..............)))))	chr6:7565606-7565838(+)$1	1	100	126	23.0327
(((((((............)))))))	chr12:74934401-74934654(+)$1	1	73	99	23.6795
.(((((.............)))))))	chr2:135210815-135211071(+)$1	1	65	91	21.7734
...((((............))))...	chr17:79804779-79805004(-)$1	1	24	50	23.2375
((.((..............)).))))	chr1:11083392-11083597(+)$1	1	145	171	20.8603
(((..((..............)))))	chr6:159049358-159049586(+)$1	1	85	111	21.4222
(((..(((...........)))..))	chr2:55461970-55462185(+)$1	1	107	133	21.0851
((((.((............)).))))	chr3:48787904-48788159(-)$1	1	94	120	21.8127
(((((((............)))))))	chr14:60756427-60756728(+)$1	1	166	192	23.8769
(((((((.............))))))	chr8:62593432-62593699(-)$1	1	97	123	24.1436
(((((((...........))).))))	chr4:22475295-22475551(-)$1	1	84	110	21.1022
..((((((...........)))))).	chr2:21234420-21234654(-)$1	1	69	95	21.8489
((((((((...........))))).)	chr5:179155603-179155819(+)$1	1	121	147	22.4720
((((.((.............))))))	chr2:21252681-21252894(-)$1	1	103	129	23.8104
((.((((.............)))).)	chr1:36366983-36367239(+)$1	1	109	135	23.3363
(((((.(..............).)))	chr17:26962450-26962722(-)$1	1	176	202	22.3794
.(((.((..............)).))	chr20:62589163-62589412(-)$1	1	159	185	22.5126
((.(................))))))	chr3:133473237-133473440(+)$1	1	107	133	20.1531
.((((((..............)))))	chr16:67891249-67891509(+)$1	1	93	119	22.7805
(((((.((...........)).))))	chr3:33133461-33133743(-)$1	1	108	134	21.5111
..(((((............)))))..	chr2:21230971-21231210(-)$1	1	189	215	20.6387
(((.(((................)))	chr4:56283883-56284180(+)$1	1	188	214	20.6320
.(((((.............)))))..	chr22:41223036-41223297(-)$1	1	216	242	23.9312
(((.(((.............))))))	chr6:34556388-34556641(-)$1	1	140	166	23.6575
.((..((..............))..)	chr7:103301791-103302019(-)$1	1	74	100	21.7595
((((.((............)).)))(	chr1:20980020-20980284(-)$1	1	29	55	21.8065
(..(((((...........)))))..	chr1:154574509-154574823(-)$1	1	284	310	22.4101
((((((((...........)))))))	chr20:37193945-37194220(+)$1	1	86	112	21.9323
..(.(((.............))).).	chr4:74280653-74280859(+)$1	1	159	185	24.1662
).((((((...........)))))).	chr10:33214702-33214953(-)$1	1	90	116	20.2649
(((((((..............)))))	chr12:51112485-51112702(+)$1	1	113	139	23.2362
..(((((............)))))..	chr15:89740127-89740459(+)$1	1	43	69	20.6387
..(((((............)))))..	chr5:102364525-102364798(+)$1	1	112	138	24.5719
...((((............))))...	chr4:57883175-57883443(+)$1	1	107	133	20.1976
.(((((...............)))))	chr6:160490914-160491129(+)$1	1	126	152	18.6196
.((((((.............))))))	chr4:79350228-79350464(+)$1	1	5	31	23.8132
(((((((............)))))..	chr3:184023549-184023817(+)$1	1	8	34	20.1425

#PSSM
g : 0.16	[ : 0.09	" : 0.09	! : 0.08	: : 0.06	e : 0.06	# : 0.06	c : 0.06	d : 0.04	i : 0.04	f : 0.04	= : 0.03	h : 0.03	D : 0.01	E : 0.01	H : 0.01	' : 0.01	I : 0.01	
f : 0.16	g : 0.14	e : 0.13	! : 0.06	# : 0.06	c : 0.06	b : 0.04	" : 0.04	d : 0.04	i : 0.04	: : 0.04	= : 0.03	h : 0.03	[ : 0.01	' : 0.01	I : 0.01	
e : 0.24	f : 0.18	g : 0.14	c : 0.06	b : 0.04	d : 0.04	# : 0.04	[ : 0.04	" : 0.03	i : 0.03	h : 0.03	! : 0.01	a : 0.01	= : 0.01	' : 0.01	
e : 0.26	f : 0.18	d : 0.14	g : 0.11	! : 0.08	[ : 0.06	c : 0.04	i : 0.03	b : 0.01	h : 0.01	a : 0.01	= : 0.01	
e : 0.24	f : 0.18	d : 0.11	c : 0.09	[ : 0.09	g : 0.08	! : 0.08	y : 0.03	i : 0.03	b : 0.01	= : 0.01	
e : 0.22	f : 0.14	b : 0.14	c : 0.11	d : 0.11	g : 0.08	[ : 0.04	w : 0.03	y : 0.03	i : 0.03	= : 0.01	
b : 0.18	e : 0.16	f : 0.14	c : 0.11	d : 0.11	g : 0.08	v : 0.04	w : 0.03	y : 0.03	i : 0.03	a : 0.01	= : 0.01	x : 0.01	
u : 0.27	v : 0.24	w : 0.19	y : 0.06	t : 0.04	c : 0.03	b : 0.03	f : 0.03	e : 0.03	i : 0.01	x : 0.01	
u : 0.27	v : 0.24	w : 0.19	t : 0.19	y : 0.06	x : 0.01	
u : 0.27	v : 0.24	w : 0.19	t : 0.19	y : 0.06	x : 0.01	
u : 0.27	v : 0.24	w : 0.19	t : 0.19	y : 0.06	x : 0.01	
u : 0.27	v : 0.24	w : 0.19	t : 0.19	y : 0.06	x : 0.01	
u : 0.27	v : 0.24	w : 0.19	t : 0.19	y : 0.06	x : 0.01	
u : 0.27	v : 0.24	w : 0.19	t : 0.19	y : 0.06	x : 0.01	
u : 0.27	v : 0.24	w : 0.19	t : 0.19	y : 0.06	x : 0.01	
u : 0.27	v : 0.24	w : 0.19	t : 0.19	y : 0.06	x : 0.01	
u : 0.27	v : 0.24	w : 0.19	t : 0.19	y : 0.06	x : 0.01	
u : 0.27	v : 0.24	w : 0.19	t : 0.19	y : 0.06	x : 0.01	
u : 0.27	v : 0.24	w : 0.19	t : 0.14	y : 0.06	f : 0.01	d : 0.01	c : 0.01	x : 0.01	
v : 0.19	e : 0.19	w : 0.16	b : 0.09	f : 0.08	y : 0.06	d : 0.06	c : 0.04	g : 0.03	i : 0.03	x : 0.01	
e : 0.19	w : 0.16	b : 0.13	f : 0.11	c : 0.09	g : 0.09	d : 0.09	y : 0.03	i : 0.03	a : 0.01	x : 0.01	
e : 0.24	f : 0.14	d : 0.11	g : 0.09	b : 0.09	] : 0.09	c : 0.08	y : 0.03	i : 0.03	2 : 0.01	a : 0.01	= : 0.01	
e : 0.26	f : 0.16	g : 0.11	d : 0.11	c : 0.08	b : 0.06	2 : 0.04	y : 0.03	] : 0.03	i : 0.03	3 : 0.01	h : 0.01	= : 0.01	
e : 0.29	f : 0.19	g : 0.11	d : 0.09	2 : 0.08	] : 0.04	c : 0.04	i : 0.03	3 : 0.01	4 : 0.01	h : 0.01	= : 0.01	8 : 0.01	
f : 0.18	g : 0.13	e : 0.09	d : 0.08	2 : 0.06	: : 0.06	c : 0.06	3 : 0.06	] : 0.04	4 : 0.04	i : 0.03	h : 0.03	b : 0.01	G : 0.01	a : 0.01	= : 0.01	8 : 0.01	
g : 0.14	f : 0.13	e : 0.09	: : 0.08	d : 0.08	b : 0.06	c : 0.06	3 : 0.04	4 : 0.04	D : 0.03	= : 0.03	i : 0.03	h : 0.03	2 : 0.03	] : 0.01	G : 0.01	6 : 0.01	8 : 0.01	

#score	1361.8250143459818
#seq	61
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_UTR_m1_run1.txt

#BEAR
ggggggdddd!!ffffffrrrrrrrrrffffff22dddde	chr22:20052627-20052879(+)$1	252	134	174	13.5835
####ggggggg!!ccctttttttttttccc22ggggggg4	chr17:28443947-28444164(+)$1	217	150	190	20.8355
E:::dddd####cccxxxxxxxxxxxxxxxccc333dddd	chr16:618516-618744(+)$1	228	188	228	13.3750
"""=============[arrrrrrrrra]===========	chr17:27717512-27717774(+)$1	262	178	218	18.5528
hhhhdddd[bbeeeeevvvvvvvvvvvvveeeee]bb]dd	chr9:134269414-134269692(+)$1	278	207	247	16.4759
[ccc!!ffffff!!cccssssssssssccc22ffffff22	chr7:116594345-116594614(+)$1	269	181	221	17.4450
ddd"""ccc^^^^^^^^^^^^^^^^^^^^ccc4444dddd	chr17:56405561-56405937(-)$1	376	173	213	13.9611
[bb[dddd!!gggggggssssssssssggggggg22dddd	chr22:20073166-20073369(+)$1	203	124	164	21.4908
[eeeeebbgggggggcccrrrrrrrrrccc]ggggggg]b	chr3:49057804-49058052(-)$1	248	76	116	15.4115
!bb!!gggggggxxxxxxxxxxxxxxxggggggg22bb22	chr19:18111906-18112175(+)$1	269	14	54	17.6609
ggg]ccc:iiiiiiiiitttttttttttiiiiiiiii:::	chr8:102217336-102217599(-)$1	263	217	257	16.5325
dddd[ccc!!ddddvvvvvvvvvvvvvdddd]cccdddd]	chr19:46142162-46142429(-)$1	267	111	151	17.3513
hhhhhhh[a[a[eeeeesssssssssseeeee]a]a]hhh	chr19:9785438-9785701(-)$1	263	180	220	16.6983
[bb!!ccc[ccc!!eeeeeqqqqqqqqeeeeeccc]cccb	chr3:20081641-20081854(+)$1	213	59	99	12.4871
fffff[bbdddd[ddddssssssssssdddddddd]bb]f	chr11:64073737-64073985(+)$1	248	140	180	15.1409
=====$$$$$eeeeewwwwwwwwwwwwwweeeee======	chr3:9471584-9471839(+)$1	255	75	115	19.6969
fffffccc[ccc!!a[eeeeeooooooeeeee]a22ccc]	chr17:8108125-8108363(-)$1	238	180	220	10.8467
[==========!!eeeee!!aooooooa22eeeee]====	chr13:113918551-113918803(+)$1	252	31	71	13.0149
[eeeee"""ccc[ccc[bboooooobbccc]ccc4444ee	chr3:49058680-49058908(-)$1	228	53	93	11.0405
cc[eeeee"""gggggggrrrrrrrrrggggggg333eee	chr3:49058533-49058772(-)$1	239	101	141	16.0820
[iiiiiiiii!!eeeeevvvvvvvvvvvvveeeee]iiii	chr9:97848227-97848469(+)$1	242	86	126	19.2195
"""=============[arrrrrrrrra]===========	chr17:27717611-27717858(+)$1	247	79	119	18.5528
HHHHHHggggggg[cccssssssssssccc]gggggggcc	chr1:182360767-182360997(-)$1	230	20	60	16.3416
iiiiiiigggggggcccssssssssssccc]gggggggee	chr1:2121218-2121441(-)$1	223	131	171	20.4902
=!!ccc[dddd[eeeeerrrrrrrrreeeeedddd]ccc3	chr17:28444038-28444275(+)$1	237	81	121	13.9279
[bb[dddd!!gggggggssssssssssggggggg22dddd	chr22:20073160-20073366(+)$1	206	130	170	21.4908
ggggg[ccc[ffffffuuuuuuuuuuuuffffffccc22g	chr1:2122099-2122402(-)$1	303	205	245	18.4131
dbbbb!!gggggggvvvvvvvvvvvvvggggggg]bb333	chr2:85772094-85772349(+)$1	255	132	172	19.1581
ggdddd[cccddddvvvvvvvvvvvvvdddd]ccc]dddd	chr1:167385934-167386191(+)$1	257	95	135	17.5381
"bb[bb==========[bbqqqqqqqqbb]==========	chr3:20081761-20082033(+)$1	272	87	127	13.6008
fffff!!bb[ddddcccssssssssssccc]dddd]bb]f	chr19:1407560-1407803(+)$1	243	27	67	16.9685
gffffff[eeeee[avvvvvvvvvvvvva]eeeee]ffff	chr12:62997081-62997361(+)$1	280	20	60	17.0852
[==========yyyyyyyyyyyyyyyy==========]ee	chr17:46657131-46657365(-)$1	234	89	129	19.6172
dd!!eeeee[gggggggtttttttttttgggggggeeeee	chr20:62572717-62572971(-)$1	254	92	132	19.6185
[bb[dddd!!gggggggssssssssssggggggg22dddd	chr22:20073153-20073360(+)$1	207	137	177	21.4908
[bb[dddd!!gggggggssssssssssggggggg22dddd	chr22:20073205-20073447(+)$1	242	85	125	21.4908
c####ggggggg!!cccooooooccc]ggggggg22ccc]	chr2:240900084-240900341(-)$1	257	82	122	12.8867
dddd!!==========qqqqqqqq==========22dddd	chr17:46655730-46655996(-)$1	266	129	169	12.5861
ggggg::gggggggwwwwwwwwwwwwwwggggggg:dddd	chr11:118965239-118965471(-)$1	232	162	202	18.7466
[bba[accc[ccc!!cccrrrrrrrrrccc22ccc]ccc]	chr5:134363648-134363982(-)$1	334	178	218	16.3798
dd!!bb[==========ssssssssss==========bbd	chr12:69135560-69135827(+)$1	267	87	127	19.9672
fbb[ccc[ggggggg"""cccooooooccc]gggggggcc	chr22:46505757-46506000(+)$1	243	130	170	12.9261
[==========yyyyyyyyyyyyyyyy==========]ee	chr17:46657123-46657331(-)$1	208	55	95	19.6172
[bb[dddd!!gggggggssssssssssggggggg22dddd	chr22:20073192-20073405(+)$1	213	98	138	21.4908
e####a[ggggggg!!aqqqqqqqqa4444ggggggg]a2	chr17:80211014-80211280(-)$1	266	43	83	13.5815
======]bbbb[bb!!assssssssssa22bbbbdddd[d	chr22:46509488-46509744(+)$1	256	149	189	15.7426
[bb[dddd!!gggggggssssssssssggggggg22dddd	chr22:20073257-20073483(+)$1	226	33	73	21.4908
[bb[dddd!!gggggggssssssssssggggggg22dddd	chr22:20073169-20073385(+)$1	216	121	161	21.4908
ccc[cccdddd[ddddssssssssssdddd]dddd333cc	chr19:2270306-2270559(+)$1	253	89	129	16.2355
IIII==========[bbssssssssssbb22=========	chr17:46656908-46657187(-)$1	279	87	127	15.2282

#otherMatches

#Seq PSSM
AGAACACAGGCGUGCUUGGACUCUUGACAAGCAGACCUGC	chr22:20052627-20052879(+)$1	252	134	174	13.5835
UAAAGGAAGUUAGGCUGAGGGGCAGAGAGCGAGACUUUUC	chr17:28443947-28444164(+)$1	217	150	190	20.8355
CCCUGCAUUCAUGCCCCCCACACCCCCUCAGGCCCUGUGC	chr16:618516-618744(+)$1	228	188	228	13.3750
AGAGGGCCUCGGCUGUGUGAGGACUAGAGGCGGCCGAGGC	chr17:27717512-27717774(+)$1	262	178	218	18.5528
gcccggccgcgcccgcggAACCAGACCAGGUgggucgggg	chr9:134269414-134269692(+)$1	278	207	247	16.4759
AGCAAGUGCCGCGUGCCUCCCAUCCUUGGUCGGUGGUAAA	chr7:116594345-116594614(+)$1	269	181	221	17.4450
agacacccacacacacacacacaaacaACUGGCAACUCUG	chr17:56405561-56405937(-)$1	376	173	213	13.9611
CCAAUAAUUGAGGCAGUGGUUCUAAAAGCUGUCUACAUUA	chr22:20073166-20073369(+)$1	203	124	164	21.4908
CUCUCAGUUGCGCCCUCAGGCUGGAGGUGAUGGGUGUAGA	chr3:49057804-49058052(-)$1	248	76	116	15.4115
ACGGGGGCGGAUGCAGAGGACCAGGAAGUUCGCCGACGAC	chr19:18111906-18112175(+)$1	269	14	54	17.6609
UGGACGCAGGGGCCGGGUUUCGGGCAGUCUCGGCCUCCAG	chr8:102217336-102217599(-)$1	263	217	257	16.5325
ugugucuuaggcucugcaagauCAACCGAGCAAAGCACAC	chr19:46142162-46142429(-)$1	267	111	151	17.3513
GUCUGGCUGCGUCGGGAAGUGUGUUUGUUCCGCCUCCGCC	chr19:9785438-9785701(-)$1	263	180	220	16.6983
AGCGGAGCCGCUAGUCCCCUCCCUCCUGGGGGAGCAgcug	chr3:20081641-20081854(+)$1	213	59	99	12.4871
CCUGGGACCGGCAUGCUGGGGCAGGAGGGCAGCCGCGUGU	chr11:64073737-64073985(+)$1	248	140	180	15.1409
CUGGAAAAAUCCUGGUGUUUUGAAUAUGUUCAGGUCCAGU	chr3:9471584-9471839(+)$1	255	75	115	19.6969
CCUGUCAUUCACUCGGGUGCGUGUGUUUGUAUGUCUGUGU	chr17:8108125-8108363(-)$1	238	180	220	10.8467
UGUUUUAGGGUUUGGGGCUAGUGUGUUUGUGUUUCCAUUC	chr13:113918551-113918803(+)$1	252	31	71	13.0149
AGUAGAAGCGCGUGGAGCAUCACCUUGUCCUCGUUCACUC	chr3:49058680-49058908(-)$1	228	53	93	11.0405
CUACCCGCGGGGCCGGGCGAGCGGGAAGCUCGGCACAGUG	chr3:49058533-49058772(-)$1	239	101	141	16.0820
ACUGAGCUGAUAUCAGUUCUCAUUUUACACACUGGCUCAG	chr9:97848227-97848469(+)$1	242	86	126	19.2195
AGAGGGCCUCGGCUGUGUGAGGACUAGAGGCGGCCGAGGC	chr17:27717611-27717858(+)$1	247	79	119	18.5528
gggggcggccccgggccgcggAUAAAGGGUGCGGGGCUGC	chr1:182360767-182360997(-)$1	230	20	60	16.3416
GGAGCAGAGAGGGCCCGGAGGUCCAGACGGUGCUCUCUGC	chr1:2121218-2121441(-)$1	223	131	171	20.4902
CAGAGAGCGAGACUUUUCUAUUUUCCAAAAGCUCGGUCUG	chr17:28444038-28444275(+)$1	237	81	121	13.9279
CCAAUAAUUGAGGCAGUGGUUCUAAAAGCUGUCUACAUUA	chr22:20073160-20073366(+)$1	206	130	170	21.4908
GUCCCCCAGCAGUGGCGUGUGAGGGAUGGUCACUCUGAUG	chr1:2122099-2122402(-)$1	303	205	245	18.4131
CUGACUUGGCUGGUGUGGUACAGAGAAGCCAGCUUGUUUA	chr2:85772094-85772349(+)$1	255	132	172	19.1581
CAGUGCUGCUUUCUGCUACUUUCAAUGGGAACAGCUGUAC	chr1:167385934-167386191(+)$1	257	95	135	17.5381
agggggcgggagggcguggggggagggUCUCGCUCUCCCG	chr3:20081761-20082033(+)$1	272	87	127	13.6008
cggUGACCGUUGGCGCCGAGGGGAGGAGGCAgccgccgcc	chr19:1407560-1407803(+)$1	243	27	67	16.9685
GCGCUUUUGCCGCCCAUUUCCUGCUUUCGAGCGGCUGAGG	chr12:62997081-62997361(+)$1	280	20	60	17.0852
CCGAAUUUGUGUAAGGAAUUUUGUGGUCACAAAUUCGUAU	chr17:46657131-46657365(-)$1	234	89	129	19.6172
GCCCGGCCCACUUCUGCUUCCUCUUAGCGCAGGAGGGGUC	chr20:62572717-62572971(-)$1	254	92	132	19.6185
CCAAUAAUUGAGGCAGUGGUUCUAAAAGCUGUCUACAUUA	chr22:20073153-20073360(+)$1	207	137	177	21.4908
CCAAUAAUUGAGGCAGUGGUUCUAAAAGCUGUCUACAUUA	chr22:20073205-20073447(+)$1	242	85	125	21.4908
GCUCUCGGCAGCCCCUGUGGUUUCAGCGCUGCCGCUCUGU	chr2:240900084-240900341(-)$1	257	82	122	12.8867
GUGGGGUCCGGGUGAGCAGAUUUCCUUAUCCGGGAAUCGC	chr17:46655730-46655996(-)$1	266	129	169	12.5861
GGCGUUCGUGACUCAGCCGCCCCAUCCCGAGUCGCUAAGG	chr11:118965239-118965471(-)$1	232	162	202	18.7466
GCCCCGCGCCCCGGAGCCCUAUAUUAAGGCCACGGAGCGA	chr5:134363648-134363982(-)$1	334	178	218	16.3798
GUCUGCCAAUGUUGUGUUUUCUGCUUCAUACGAUAUUGCA	chr12:69135560-69135827(+)$1	267	87	127	19.9672
UGACGACCAGGGUGGACUAGGGGCCUGUCUCCCAUUCUGU	chr22:46505757-46506000(+)$1	243	130	170	12.9261
CCGAAUUUGUGUAAGGAAUUUUGUGGUCACAAAUUCGUAU	chr17:46657123-46657331(-)$1	208	55	95	19.6172
CCAAUAAUUGAGGCAGUGGUUCUAAAAGCUGUCUACAUUA	chr22:20073192-20073405(+)$1	213	98	138	21.4908
CCCUGCUGUGGCUGAGGGGCAGGAACAAUGCAGCCACUGA	chr17:80211014-80211280(-)$1	266	43	83	13.5815
UGCCUUCCCUGAGGAGCCCAGUGACACGACCCCAUGGGAG	chr22:46509488-46509744(+)$1	256	149	189	15.7426
CCAAUAAUUGAGGCAGUGGUUCUAAAAGCUGUCUACAUUA	chr22:20073257-20073483(+)$1	226	33	73	21.4908
CCAAUAAUUGAGGCAGUGGUUCUAAAAGCUGUCUACAUUA	chr22:20073169-20073385(+)$1	216	121	161	21.4908
GACGGACCUCGUGGGCCCCGUUUUUCGCCCCUGAGCGAGU	chr19:2270306-2270559(+)$1	253	89	129	16.2355
AUUCCUCUAUCUUUUCCUCCUUCAACUGGUUAGAGAUGGA	chr17:46656908-46657187(-)$1	279	87	127	15.2282

#DB
))))))((((..((((((.........))))))..))))(	chr22:20052627-20052879(+)$1	1	134	174	13.5835
....(((((((..(((...........)))..))))))).	chr17:28443947-28444164(+)$1	1	150	190	20.8355
)...((((....(((...............)))...))))	chr16:618516-618744(+)$1	1	188	228	13.3750
...(((((((((((((.(.........).)))))))))))	chr17:27717512-27717774(+)$1	1	178	218	18.5528
((((((((.(((((((.............))))).)).))	chr9:134269414-134269692(+)$1	1	207	247	16.4759
.(((..((((((..(((..........)))..))))))..	chr7:116594345-116594614(+)$1	1	181	221	17.4450
(((...(((....................)))....))))	chr17:56405561-56405937(-)$1	1	173	213	13.9611
.((.((((..(((((((..........)))))))..))))	chr22:20073166-20073369(+)$1	1	124	164	21.4908
.(((((((((((((((((.........))).))))))).)	chr3:49057804-49058052(-)$1	1	76	116	15.4115
.((..(((((((...............)))))))..))..	chr19:18111906-18112175(+)$1	1	14	54	17.6609
))).))).(((((((((...........)))))))))...	chr8:102217336-102217599(-)$1	1	217	257	16.5325
((((.(((..((((.............)))).))))))).	chr19:46142162-46142429(-)$1	1	111	151	17.3513
(((((((.(.(.(((((..........))))).).).)))	chr19:9785438-9785701(-)$1	1	180	220	16.6983
.((..(((.(((..(((((........)))))))).))))	chr3:20081641-20081854(+)$1	1	59	99	12.4871
(((((.((((((.((((..........)))))))).)).)	chr11:64073737-64073985(+)$1	1	140	180	15.1409
(((((.....(((((..............)))))))))))	chr3:9471584-9471839(+)$1	1	75	115	19.6969
((((((((.(((..(.(((((......))))).)..))).	chr17:8108125-8108363(-)$1	1	180	220	10.8467
.((((((((((..(((((..(......)..))))).))))	chr13:113918551-113918803(+)$1	1	31	71	13.0149
.(((((...(((.(((.((......))))).)))....))	chr3:49058680-49058908(-)$1	1	53	93	11.0405
((.(((((...(((((((.........)))))))...)))	chr3:49058533-49058772(-)$1	1	101	141	16.0820
.(((((((((..(((((.............))))).))))	chr9:97848227-97848469(+)$1	1	86	126	19.2195
...(((((((((((((.(.........).)))))))))))	chr17:27717611-27717858(+)$1	1	79	119	18.5528
(((((((((((((.(((..........))).)))))))((	chr1:182360767-182360997(-)$1	1	20	60	16.3416
)))))))((((((((((..........))).)))))))((	chr1:2121218-2121441(-)$1	1	131	171	20.4902
(..(((.((((.(((((.........))))))))).))).	chr17:28444038-28444275(+)$1	1	81	121	13.9279
.((.((((..(((((((..........)))))))..))))	chr22:20073160-20073366(+)$1	1	130	170	21.4908
(((((.(((.((((((............)))))))))..)	chr1:2122099-2122402(-)$1	1	205	245	18.4131
(((((..(((((((.............))))))).))...	chr2:85772094-85772349(+)$1	1	132	172	19.1581
((((((.(((((((.............)))).))).))))	chr1:167385934-167386191(+)$1	1	95	135	17.5381
.((.((((((((((((.((........)).))))))))))	chr3:20081761-20082033(+)$1	1	87	127	13.6008
(((((..((.(((((((..........))).)))).)).)	chr19:1407560-1407803(+)$1	1	27	67	16.9685
)((((((.(((((.(.............).))))).))))	chr12:62997081-62997361(+)$1	1	20	60	17.0852
.((((((((((................)))))))))).))	chr17:46657131-46657365(-)$1	1	89	129	19.6172
((..(((((.(((((((...........))))))))))))	chr20:62572717-62572971(-)$1	1	92	132	19.6185
.((.((((..(((((((..........)))))))..))))	chr22:20073153-20073360(+)$1	1	137	177	21.4908
.((.((((..(((((((..........)))))))..))))	chr22:20073205-20073447(+)$1	1	85	125	21.4908
(....(((((((..(((......))).)))))))..))).	chr2:240900084-240900341(-)$1	1	82	122	12.8867
((((..((((((((((........))))))))))..))))	chr17:46655730-46655996(-)$1	1	129	169	12.5861
)))))..(((((((..............))))))).((((	chr11:118965239-118965471(-)$1	1	162	202	18.7466
.(((.((((.(((..(((.........)))..))).))).	chr5:134363648-134363982(-)$1	1	178	218	16.3798
((..((.((((((((((..........)))))))))))))	chr12:69135560-69135827(+)$1	1	87	127	19.9672
(((.(((.(((((((...(((......))).)))))))))	chr22:46505757-46506000(+)$1	1	130	170	12.9261
.((((((((((................)))))))))).))	chr17:46657123-46657331(-)$1	1	55	95	19.6172
.((.((((..(((((((..........)))))))..))))	chr22:20073192-20073405(+)$1	1	98	138	21.4908
(....(.(((((((..(........)....))))))).).	chr17:80211014-80211280(-)$1	1	43	83	13.5815
)))))).))((.((..(..........)..))))((((.(	chr22:46509488-46509744(+)$1	1	149	189	15.7426
.((.((((..(((((((..........)))))))..))))	chr22:20073257-20073483(+)$1	1	33	73	21.4908
.((.((((..(((((((..........)))))))..))))	chr22:20073169-20073385(+)$1	1	121	161	21.4908
(((.(((((((.((((..........)))).))))...))	chr19:2270306-2270559(+)$1	1	89	129	16.2355
))))((((((((((.((..........))..)))))))))	chr17:46656908-46657187(-)$1	1	87	127	15.2282

#PSSM
[ : 0.32	g : 0.12	d : 0.12	f : 0.08	" : 0.06	= : 0.06	c : 0.06	h : 0.04	# : 0.02	E : 0.02	! : 0.02	H : 0.02	i : 0.02	e : 0.02	I : 0.02	
b : 0.25	g : 0.10	d : 0.10	= : 0.10	f : 0.08	# : 0.06	c : 0.06	" : 0.04	h : 0.04	e : 0.04	i : 0.04	: : 0.02	H : 0.02	! : 0.02	I : 0.02	
b : 0.25	= : 0.10	g : 0.08	d : 0.08	f : 0.08	# : 0.06	! : 0.06	" : 0.04	h : 0.04	c : 0.04	e : 0.04	i : 0.04	: : 0.02	[ : 0.02	H : 0.02	I : 0.02	
[ : 0.19	= : 0.14	! : 0.08	f : 0.08	g : 0.06	# : 0.06	e : 0.06	d : 0.06	h : 0.04	c : 0.04	i : 0.04	: : 0.02	" : 0.02	] : 0.02	H : 0.02	b : 0.02	a : 0.02	I : 0.02	
d : 0.19	= : 0.16	g : 0.08	! : 0.08	e : 0.08	c : 0.08	f : 0.08	b : 0.06	[ : 0.04	i : 0.04	# : 0.04	" : 0.02	h : 0.02	H : 0.02	
d : 0.19	= : 0.14	c : 0.14	g : 0.08	! : 0.08	e : 0.08	[ : 0.04	i : 0.04	b : 0.04	a : 0.04	" : 0.02	h : 0.02	$ : 0.02	H : 0.02	f : 0.02	: : 0.02	
d : 0.19	c : 0.18	= : 0.16	g : 0.08	[ : 0.08	f : 0.04	b : 0.04	e : 0.04	i : 0.04	! : 0.04	h : 0.02	$ : 0.02	" : 0.02	: : 0.02	] : 0.02	
d : 0.23	= : 0.18	g : 0.16	c : 0.14	b : 0.08	[ : 0.06	e : 0.04	f : 0.02	: : 0.02	$ : 0.02	" : 0.02	i : 0.02	
g : 0.19	= : 0.18	! : 0.16	d : 0.08	c : 0.08	[ : 0.06	i : 0.04	" : 0.04	b : 0.04	e : 0.04	# : 0.02	f : 0.02	a : 0.02	$ : 0.02	
g : 0.19	= : 0.18	! : 0.16	[ : 0.10	d : 0.08	c : 0.08	b : 0.04	i : 0.04	# : 0.02	f : 0.02	^ : 0.02	$ : 0.02	" : 0.02	e : 0.02	
g : 0.36	= : 0.18	d : 0.12	c : 0.08	! : 0.04	b : 0.04	f : 0.04	e : 0.04	# : 0.02	^ : 0.02	i : 0.02	a : 0.02	" : 0.02	
g : 0.36	= : 0.12	! : 0.08	d : 0.08	[ : 0.08	c : 0.08	e : 0.06	f : 0.04	y : 0.04	# : 0.02	^ : 0.02	i : 0.02	
g : 0.32	! : 0.12	= : 0.12	e : 0.12	d : 0.08	f : 0.04	c : 0.04	[ : 0.04	y : 0.04	^ : 0.02	x : 0.02	i : 0.02	b : 0.02	
g : 0.30	= : 0.12	e : 0.12	! : 0.10	d : 0.10	c : 0.06	f : 0.04	[ : 0.04	y : 0.04	^ : 0.02	x : 0.02	i : 0.02	b : 0.02	
g : 0.21	c : 0.16	e : 0.14	= : 0.10	v : 0.06	! : 0.06	f : 0.04	d : 0.04	a : 0.04	y : 0.04	^ : 0.02	x : 0.02	i : 0.02	w : 0.02	[ : 0.02	
c : 0.18	g : 0.18	e : 0.12	= : 0.10	v : 0.08	f : 0.04	x : 0.04	d : 0.04	w : 0.04	y : 0.04	! : 0.04	^ : 0.02	i : 0.02	[ : 0.02	" : 0.02	b : 0.02	
g : 0.18	c : 0.14	e : 0.12	v : 0.10	[ : 0.08	x : 0.04	w : 0.04	y : 0.04	a : 0.04	f : 0.02	t : 0.02	^ : 0.02	i : 0.02	d : 0.02	u : 0.02	q : 0.02	= : 0.02	" : 0.02	s : 0.02	b : 0.02	
s : 0.34	v : 0.12	t : 0.06	e : 0.06	x : 0.04	a : 0.04	c : 0.04	w : 0.04	b : 0.04	y : 0.04	q : 0.04	f : 0.02	^ : 0.02	g : 0.02	r : 0.02	u : 0.02	o : 0.02	" : 0.02	
s : 0.34	r : 0.14	v : 0.12	t : 0.06	x : 0.04	e : 0.04	w : 0.04	b : 0.04	y : 0.04	q : 0.04	^ : 0.02	! : 0.02	u : 0.02	o : 0.02	c : 0.02	
s : 0.34	r : 0.14	v : 0.12	q : 0.08	t : 0.06	x : 0.04	w : 0.04	o : 0.04	y : 0.04	^ : 0.02	e : 0.02	! : 0.02	u : 0.02	c : 0.02	
s : 0.34	r : 0.14	v : 0.12	q : 0.08	t : 0.06	x : 0.04	w : 0.04	o : 0.04	y : 0.04	^ : 0.02	e : 0.02	a : 0.02	u : 0.02	c : 0.02	
s : 0.34	r : 0.14	v : 0.12	o : 0.10	q : 0.08	t : 0.06	x : 0.04	w : 0.04	y : 0.04	^ : 0.02	u : 0.02	
s : 0.34	r : 0.14	v : 0.12	o : 0.10	q : 0.08	t : 0.06	x : 0.04	w : 0.04	y : 0.04	^ : 0.02	u : 0.02	
s : 0.34	r : 0.14	v : 0.12	q : 0.08	o : 0.08	t : 0.06	x : 0.04	w : 0.04	y : 0.04	^ : 0.02	u : 0.02	c : 0.02	
s : 0.34	r : 0.14	v : 0.12	o : 0.08	t : 0.06	q : 0.06	x : 0.04	w : 0.04	y : 0.04	^ : 0.02	u : 0.02	c : 0.02	= : 0.02	
s : 0.34	r : 0.14	v : 0.12	t : 0.06	o : 0.06	x : 0.04	q : 0.04	w : 0.04	y : 0.04	^ : 0.02	b : 0.02	u : 0.02	c : 0.02	= : 0.02	a : 0.02	
s : 0.32	r : 0.12	v : 0.12	t : 0.06	o : 0.06	x : 0.04	q : 0.04	w : 0.04	y : 0.04	^ : 0.02	b : 0.02	e : 0.02	u : 0.02	] : 0.02	= : 0.02	4 : 0.02	d : 0.02	
g : 0.21	c : 0.18	a : 0.08	d : 0.08	e : 0.08	= : 0.08	v : 0.06	t : 0.04	w : 0.04	b : 0.04	f : 0.02	x : 0.02	^ : 0.02	u : 0.02	4 : 0.02	
g : 0.25	c : 0.18	d : 0.08	e : 0.08	= : 0.08	f : 0.04	] : 0.04	v : 0.04	2 : 0.04	b : 0.04	x : 0.02	^ : 0.02	i : 0.02	w : 0.02	a : 0.02	4 : 0.02	
g : 0.25	c : 0.19	= : 0.12	e : 0.12	d : 0.08	2 : 0.06	f : 0.04	] : 0.04	x : 0.02	i : 0.02	v : 0.02	4 : 0.02	
g : 0.27	e : 0.18	= : 0.14	] : 0.14	2 : 0.08	d : 0.06	f : 0.04	c : 0.04	i : 0.02	b : 0.02	
g : 0.36	= : 0.16	e : 0.16	d : 0.08	2 : 0.06	c : 0.06	f : 0.04	] : 0.04	i : 0.02	b : 0.02	
g : 0.38	= : 0.16	c : 0.12	e : 0.10	d : 0.08	f : 0.06	] : 0.04	4 : 0.02	i : 0.02	b : 0.02	
g : 0.38	= : 0.16	e : 0.10	c : 0.10	d : 0.08	f : 0.04	a : 0.04	2 : 0.02	3 : 0.02	4 : 0.02	i : 0.02	b : 0.02	
2 : 0.23	g : 0.16	= : 0.16	c : 0.10	d : 0.10	] : 0.06	e : 0.06	3 : 0.04	4 : 0.04	f : 0.02	i : 0.02	
2 : 0.21	] : 0.18	= : 0.16	g : 0.12	d : 0.06	3 : 0.06	b : 0.04	4 : 0.04	f : 0.02	i : 0.02	a : 0.02	c : 0.02	e : 0.02	: : 0.02	
d : 0.30	= : 0.18	g : 0.12	c : 0.12	b : 0.10	f : 0.04	i : 0.04	3 : 0.04	] : 0.02	4 : 0.02	e : 0.02	
d : 0.30	= : 0.12	g : 0.10	c : 0.10	] : 0.08	b : 0.08	f : 0.04	e : 0.04	3 : 0.04	: : 0.02	h : 0.02	4 : 0.02	i : 0.02	2 : 0.02	
d : 0.30	c : 0.16	= : 0.12	e : 0.12	2 : 0.06	] : 0.06	g : 0.02	: : 0.02	h : 0.02	i : 0.02	3 : 0.02	f : 0.02	b : 0.02	a : 0.02	[ : 0.02	
d : 0.30	e : 0.14	= : 0.12	] : 0.08	2 : 0.06	f : 0.06	c : 0.06	b : 0.04	3 : 0.04	4 : 0.02	: : 0.02	h : 0.02	i : 0.02	g : 0.02	

#score	851.0593606395446
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_CDS_m3_run1.txt

#BEAR
eeeeeqqqqqqqqeeeee	chr15:28386575-28386840(-)$1	265	109	127	13.6218
dddbbqqqqqqqqbb]dd	chr5:139908043-139908301(+)$1	258	221	239	12.8236
$$cccqqqqqqqqccc66	chr3:127842363-127842690(-)$1	327	28	46	13.0412
:ddddqqqqqqqqdddd:	chr1:19467798-19468067(-)$1	269	68	86	12.0686
eeeeeqqqqqqqqeeeee	chr15:28437141-28437383(-)$1	242	94	112	13.6218
gggggqqqqqqqqggggg	chr1:19518588-19518808(-)$1	220	99	117	13.7363
c[cccqqqqqqqqccc44	chr9:116997819-116998032(+)$1	213	121	139	14.3355
[ddddqqqqqqqqdddd]	chr1:43232518-43232794(-)$1	276	240	258	13.9991
fffffqqqqqqqqfffff	chr16:27512422-27512684(-)$1	262	216	234	12.8308
!ddddqqqqqqqqddddg	chr4:123141415-123141705(+)$1	290	261	279	13.9229
ff[bbqqqqqqqqbbfff	chr19:4037218-4037475(+)$1	257	42	60	12.8294
!!cccqqqqqqqqccc22	chr9:128003295-128003546(-)$1	251	133	151	14.3960
$ddddqqqqqqqqdddd5	chr12:123071160-123071401(+)$1	241	30	48	12.9446
gggggqqqqqqqqggggg	chr8:100168758-100169057(+)$1	299	73	91	13.7363
gggggqqqqqqqqggggg	chr4:2695443-2695696(+)$1	253	189	207	13.7363
ee[bbqqqqqqqqbb333	chr16:2149765-2150019(-)$1	254	179	197	13.4571
!!cccqqqqqqqqccc]e	chr17:57760167-57760391(+)$1	224	150	168	14.5326
gggggqqqqqqqqggggg	chr3:184049157-184049443(+)$1	286	190	208	13.7363
fffffqqqqqqqqfffff	chr14:102548634-102548881(-)$1	247	78	96	12.8308
fff[aqqqqqqqqaffff	chr15:28369082-28369303(-)$1	221	51	69	13.0392
hhhhhqqqqqqqqhhhhh	chr6:26216694-26216959(-)$1	265	68	86	12.2905
!!cccqqqqqqqqccc]a	chr15:91537536-91537823(-)$1	287	212	230	14.5338
[ddddqqqqqqqqdddd]	chr20:48807460-48807731(+)$1	271	72	90	13.9991
!a[bbqqqqqqqqbb]a2	chr10:103912058-103912373(+)$1	315	175	193	13.3725
eeeeeqqqqqqqqeeeee	chr17:65850027-65850277(+)$1	250	203	221	13.6218
++cccqqqqqqqqccc>>	chr17:60061532-60061807(-)$1	275	181	199	12.6674
:ddddqqqqqqqqddddE	chr18:13052816-13053057(+)$1	241	0	18	11.8686
b[cccqqqqqqqqccc]b	chr2:8918670-8918933(-)$1	263	88	106	13.8730
eeeeeqqqqqqqqeeeee	chr7:135291493-135291745(+)$1	252	0	18	13.6218
eeeeeqqqqqqqqeeeee	chr12:103306505-103306776(-)$1	271	8	26	13.6218
eeeeeqqqqqqqqeeeee	chr2:32800192-32800458(+)$1	266	165	183	13.6218
""cccqqqqqqqqccc33	chr3:184049029-184049253(+)$1	224	71	89	14.5540
!!cccqqqqqqqqccc22	chr9:113018592-113018888(-)$1	296	183	201	14.3960
c[cccqqqqqqqqccccc	chr4:85701229-85701531(-)$1	302	214	232	14.1790
eeeeeqqqqqqqqeeeee	chr4:79236742-79236977(+)$1	235	77	95	13.6218
:ddddqqqqqqqqdddd:	chr1:19487987-19488240(-)$1	253	21	39	12.0686
!ddddqqqqqqqqdddd2	chr17:48797003-48797288(+)$1	285	220	238	13.9158
bb[bbqqqqqqqqbb]bb	chr15:28375255-28375508(-)$1	253	92	110	12.2374
[bb[aqqqqqqqqa]bbb	chr15:28356966-28357212(-)$1	246	193	211	12.2831
[ddddqqqqqqqqdddd2	chr12:26714594-26714799(-)$1	205	8	26	13.8901
hhhhhqqqqqqqqhhhhh	chr16:2153169-2153395(-)$1	226	160	178	12.2905
ccc[aqqqqqqqqa]ccc	chr12:49439636-49439850(-)$1	214	184	202	13.4907
c[cccqqqqqqqqccc]c	chr1:19512934-19513169(-)$1	235	128	146	14.2763
c[cccqqqqqqqqccc]c	chr1:35656322-35656646(-)$1	324	3	21	14.2763
!!cccqqqqqqqqccca]	chr1:113235408-113235644(+)$1	236	141	159	14.5642
bb[bbqqqqqqqqbb]bb	chr10:21875150-21875369(+)$1	219	3	21	12.2374
ee[bbqqqqqqqqbb22e	chr5:140699410-140699685(-)$1	275	18	36	12.8670
eeeeeqqqqqqqqeeeee	chr21:38512786-38513031(+)$1	245	171	189	13.6218
iddddqqqqqqqqddddC	chr2:71650727-71650985(+)$1	258	232	250	12.6679
[ddddqqqqqqqqddddc	chr4:122617634-122617880(-)$1	246	154	172	13.8698
""cccqqqqqqqqcccee	chr17:37618270-37618525(+)$1	255	61	79	14.3064
gggggqqqqqqqqggggg	chr16:18861459-18861722(-)$1	263	33	51	13.7363
bb[bbqqqqqqqqbbbb]	chr8:100115080-100115326(+)$1	246	161	179	12.3134
:ddddqqqqqqqqddddd	chr1:39898151-39898421(+)$1	270	41	59	12.7036
"""bbqqqqqqqqbb333	chr9:117072854-117073081(+)$1	227	87	105	13.4703
eeeeeqqqqqqqqeeeee	chr6:144820379-144820586(+)$1	207	141	159	13.6218
eeeeeqqqqqqqqeeeee	chr15:28422467-28422705(-)$1	238	52	70	13.6218
fffffqqqqqqqqfffff	chr14:55369278-55369607(-)$1	329	221	239	12.8308
fffffqqqqqqqqfffff	chr6:27100380-27100639(-)$1	259	94	112	12.8308
[ddddqqqqqqqqdddd]	chr10:19676550-19676787(+)$1	237	50	68	13.9991
c[cccqqqqqqqqccc22	chr2:32664576-32664781(+)$1	205	84	102	14.1492
eeeeeqqqqqqqqeeeee	chr15:28386640-28386875(-)$1	235	144	162	13.6218
iiiiiqqqqqqqqiiiii	chr11:72408269-72408535(-)$1	266	144	162	13.6667

#otherMatches

#Seq PSSM
UUAUGGAUGGGGACAUAA	chr15:28386575-28386840(-)$1	265	109	127	13.6218
CGUCUACCUAACCAGAAC	chr5:139908043-139908301(+)$1	258	221	239	12.8236
UUGCCCUAGUAACGGCCG	chr3:127842363-127842690(-)$1	327	28	46	13.0412
AGACAGCUGAAAAUGUCA	chr1:19467798-19468067(-)$1	269	68	86	12.0686
GCGGUAUUUUGUGGCCGU	chr15:28437141-28437383(-)$1	242	94	112	13.6218
GCUCCCCUAAACUGGGGC	chr1:19518588-19518808(-)$1	220	99	117	13.7363
AUGAGAUUUUCCCCUCCC	chr9:116997819-116998032(+)$1	213	121	139	14.3355
GGGGCAUGGUGACGCCUG	chr1:43232518-43232794(-)$1	276	240	258	13.9991
UUGGAAGUUUUUGUCUAG	chr16:27512422-27512684(-)$1	262	216	234	12.8308
UAUUGGGUUAAAACAAUG	chr4:123141415-123141705(+)$1	290	261	279	13.9229
UUGCAGAGAGAAGUGGGG	chr19:4037218-4037475(+)$1	257	42	60	12.8294
CUGGCAAGAUGAAGCUCU	chr9:128003295-128003546(-)$1	251	133	151	14.3960
gggcuuuuaguguggcca	chr12:123071160-123071401(+)$1	241	30	48	12.9446
CCAUUCGAAUAUUGGUGG	chr8:100168758-100169057(+)$1	299	73	91	13.7363
CACUUUGGAAAAUGGGUG	chr4:2695443-2695696(+)$1	253	189	207	13.7363
GCAGCCUCUUCCUGCCCA	chr16:2149765-2150019(-)$1	254	179	197	13.4571
UGGACUUCAUAUUGUUGU	chr17:57760167-57760391(+)$1	224	150	168	14.5326
UGCUGAAGGAGGGCAGCA	chr3:184049157-184049443(+)$1	286	190	208	13.7363
AGUCAUCACUUUUUGAUU	chr14:102548634-102548881(-)$1	247	78	96	12.8308
CGACGAAACUGGACUCGG	chr15:28369082-28369303(-)$1	221	51	69	13.0392
UGUUAUUGUUUUCUGACA	chr6:26216694-26216959(-)$1	265	68	86	12.2905
GACGCGGGAGGGAGCGAC	chr15:91537536-91537823(-)$1	287	212	230	14.5338
CGGGCAGCCCCAGGCCCC	chr20:48807460-48807731(+)$1	271	72	90	13.9991
CGCGAUAACCAACUCUCA	chr10:103912058-103912373(+)$1	315	175	193	13.3725
UCCUUUUCGCUUUGAGGA	chr17:65850027-65850277(+)$1	250	203	221	13.6218
AAAUUGCCAGAAGAGUGU	chr17:60061532-60061807(-)$1	275	181	199	12.6674
GAGUCAUUUGCAAGAUUG	chr18:13052816-13053057(+)$1	241	0	18	11.8686
AUGCUGACAGAAGAGUUU	chr2:8918670-8918933(-)$1	263	88	106	13.8730
UUAAGGAUCAGAACUUGA	chr7:135291493-135291745(+)$1	252	0	18	13.6218
AGAGUUCAUGCUUGCUUU	chr12:103306505-103306776(-)$1	271	8	26	13.6218
CAGAAUGUCAAACUUCUG	chr2:32800192-32800458(+)$1	266	165	183	13.6218
GAAGGAAUUUCUACCUGA	chr3:184049029-184049253(+)$1	224	71	89	14.5540
AGAUCGAGAGCAAGGUAC	chr9:113018592-113018888(-)$1	296	183	201	14.3960
GUGGUCAAGAGUAACCCA	chr4:85701229-85701531(-)$1	302	214	232	14.1790
UGCAUGAUGGGAAAUGCA	chr4:79236742-79236977(+)$1	235	77	95	13.6218
ACACCUGUAAAAUGGUGG	chr1:19487987-19488240(-)$1	253	21	39	12.0686
GCUCCGUGGGGGAGGGGA	chr17:48797003-48797288(+)$1	285	220	238	13.9158
GAUCAGAUGACCAUGUUC	chr15:28375255-28375508(-)$1	253	92	110	12.2374
AUCGCACUUACAGGAGAG	chr15:28356966-28357212(-)$1	246	193	211	12.2831
AAUGGGUUGGAGACUAUC	chr12:26714594-26714799(-)$1	205	8	26	13.8901
CCUGGCCUUGUUCUUGGG	chr16:2153169-2153395(-)$1	226	160	178	12.2905
agacgucggacaucaucu	chr12:49439636-49439850(-)$1	214	184	202	13.4907
CAGCCAAGGUAGAGGCCG	chr1:19512934-19513169(-)$1	235	128	146	14.2763
CAUCAUCCAAUUUUGAGG	chr1:35656322-35656646(-)$1	324	3	21	14.2763
AGGUCAGGGCUCAGAUUG	chr1:113235408-113235644(+)$1	236	141	159	14.5642
UGCAGGGAAGAUACUACA	chr10:21875150-21875369(+)$1	219	3	21	12.2374
GGAACUUUUUAGUGUAAC	chr5:140699410-140699685(-)$1	275	18	36	12.8670
AUUUGAAAAAAAACAGGU	chr21:38512786-38513031(+)$1	245	171	189	13.6218
UGCUUAAACCCACAAGUG	chr2:71650727-71650985(+)$1	258	232	250	12.6679
UGCGCCCCCCACUGCGCU	chr4:122617634-122617880(-)$1	246	154	172	13.8698
AUUCAGAGAGACAUGGGG	chr17:37618270-37618525(+)$1	255	61	79	14.3064
UUUCAGAACUUGAUGAAA	chr16:18861459-18861722(-)$1	263	33	51	13.7363
CAUACUAAAAUAUGUUGA	chr8:100115080-100115326(+)$1	246	161	179	12.3134
AAUACGUCUAUUAGUAUG	chr1:39898151-39898421(+)$1	270	41	59	12.7036
CCGCCUGGAAGUUGGACC	chr9:117072854-117073081(+)$1	227	87	105	13.4703
AGGUCUGCUUGGUGACUU	chr6:144820379-144820586(+)$1	207	141	159	13.6218
GGCCGGCACGCGACGGCU	chr15:28422467-28422705(-)$1	238	52	70	13.6218
GGUCCAUGGAGAAGGGCC	chr14:55369278-55369607(-)$1	329	221	239	12.8308
AUAGCUACACAGUGCUAU	chr6:27100380-27100639(-)$1	259	94	112	12.8308
GCUGGCAAAACUCCCAGG	chr10:19676550-19676787(+)$1	237	50	68	13.9991
UAUGCGUCCUGUAGUAAG	chr2:32664576-32664781(+)$1	205	84	102	14.1492
UUAUGGAUGGGGACAUAA	chr15:28386640-28386875(-)$1	235	144	162	13.6218
GUGUGGACUACAUCACGC	chr11:72408269-72408535(-)$1	266	144	162	13.6667

#DB
(((((........)))))	chr15:28386575-28386840(-)$1	1	109	127	13.6218
(((((........)).))	chr5:139908043-139908301(+)$1	1	221	239	12.8236
..(((........)))..	chr3:127842363-127842690(-)$1	1	28	46	13.0412
.((((........)))).	chr1:19467798-19468067(-)$1	1	68	86	12.0686
(((((........)))))	chr15:28437141-28437383(-)$1	1	94	112	13.6218
(((((........)))))	chr1:19518588-19518808(-)$1	1	99	117	13.7363
(.(((........)))..	chr9:116997819-116998032(+)$1	1	121	139	14.3355
.((((........)))).	chr1:43232518-43232794(-)$1	1	240	258	13.9991
(((((........)))))	chr16:27512422-27512684(-)$1	1	216	234	12.8308
.((((........)))))	chr4:123141415-123141705(+)$1	1	261	279	13.9229
((.((........)))))	chr19:4037218-4037475(+)$1	1	42	60	12.8294
..(((........)))..	chr9:128003295-128003546(-)$1	1	133	151	14.3960
.((((........)))).	chr12:123071160-123071401(+)$1	1	30	48	12.9446
(((((........)))))	chr8:100168758-100169057(+)$1	1	73	91	13.7363
(((((........)))))	chr4:2695443-2695696(+)$1	1	189	207	13.7363
((.((........))...	chr16:2149765-2150019(-)$1	1	179	197	13.4571
..(((........))).)	chr17:57760167-57760391(+)$1	1	150	168	14.5326
(((((........)))))	chr3:184049157-184049443(+)$1	1	190	208	13.7363
(((((........)))))	chr14:102548634-102548881(-)$1	1	78	96	12.8308
(((.(........)))))	chr15:28369082-28369303(-)$1	1	51	69	13.0392
(((((........)))))	chr6:26216694-26216959(-)$1	1	68	86	12.2905
..(((........))).)	chr15:91537536-91537823(-)$1	1	212	230	14.5338
.((((........)))).	chr20:48807460-48807731(+)$1	1	72	90	13.9991
.(.((........)).).	chr10:103912058-103912373(+)$1	1	175	193	13.3725
(((((........)))))	chr17:65850027-65850277(+)$1	1	203	221	13.6218
..(((........)))..	chr17:60061532-60061807(-)$1	1	181	199	12.6674
.((((........))))(	chr18:13052816-13053057(+)$1	1	0	18	11.8686
(.(((........))).)	chr2:8918670-8918933(-)$1	1	88	106	13.8730
(((((........)))))	chr7:135291493-135291745(+)$1	1	0	18	13.6218
(((((........)))))	chr12:103306505-103306776(-)$1	1	8	26	13.6218
(((((........)))))	chr2:32800192-32800458(+)$1	1	165	183	13.6218
..(((........)))..	chr3:184049029-184049253(+)$1	1	71	89	14.5540
..(((........)))..	chr9:113018592-113018888(-)$1	1	183	201	14.3960
(.(((........)))))	chr4:85701229-85701531(-)$1	1	214	232	14.1790
(((((........)))))	chr4:79236742-79236977(+)$1	1	77	95	13.6218
.((((........)))).	chr1:19487987-19488240(-)$1	1	21	39	12.0686
.((((........)))).	chr17:48797003-48797288(+)$1	1	220	238	13.9158
((.((........)).))	chr15:28375255-28375508(-)$1	1	92	110	12.2374
.((.(........).)))	chr15:28356966-28357212(-)$1	1	193	211	12.2831
.((((........)))).	chr12:26714594-26714799(-)$1	1	8	26	13.8901
(((((........)))))	chr16:2153169-2153395(-)$1	1	160	178	12.2905
(((.(........).)))	chr12:49439636-49439850(-)$1	1	184	202	13.4907
(.(((........))).)	chr1:19512934-19513169(-)$1	1	128	146	14.2763
(.(((........))).)	chr1:35656322-35656646(-)$1	1	3	21	14.2763
..(((........)))).	chr1:113235408-113235644(+)$1	1	141	159	14.5642
((.((........)).))	chr10:21875150-21875369(+)$1	1	3	21	12.2374
((.((........))..)	chr5:140699410-140699685(-)$1	1	18	36	12.8670
(((((........)))))	chr21:38512786-38513031(+)$1	1	171	189	13.6218
)((((........)))))	chr2:71650727-71650985(+)$1	1	232	250	12.6679
.((((........)))))	chr4:122617634-122617880(-)$1	1	154	172	13.8698
..(((........)))))	chr17:37618270-37618525(+)$1	1	61	79	14.3064
(((((........)))))	chr16:18861459-18861722(-)$1	1	33	51	13.7363
((.((........)))).	chr8:100115080-100115326(+)$1	1	161	179	12.3134
.((((........))))(	chr1:39898151-39898421(+)$1	1	41	59	12.7036
...((........))...	chr9:117072854-117073081(+)$1	1	87	105	13.4703
(((((........)))))	chr6:144820379-144820586(+)$1	1	141	159	13.6218
(((((........)))))	chr15:28422467-28422705(-)$1	1	52	70	13.6218
(((((........)))))	chr14:55369278-55369607(-)$1	1	221	239	12.8308
(((((........)))))	chr6:27100380-27100639(-)$1	1	94	112	12.8308
.((((........)))).	chr10:19676550-19676787(+)$1	1	50	68	13.9991
(.(((........)))..	chr2:32664576-32664781(+)$1	1	84	102	14.1492
(((((........)))))	chr15:28386640-28386875(-)$1	1	144	162	13.6218
(((((........)))))	chr11:72408269-72408535(-)$1	1	144	162	13.6667

#PSSM
e : 0.20	! : 0.12	c : 0.09	[ : 0.09	f : 0.09	g : 0.07	: : 0.06	b : 0.06	" : 0.04	$ : 0.03	h : 0.03	i : 0.03	d : 0.01	+ : 0.01	
d : 0.22	e : 0.20	[ : 0.09	f : 0.09	g : 0.07	! : 0.07	b : 0.06	" : 0.04	h : 0.03	$ : 0.01	a : 0.01	+ : 0.01	c : 0.01	i : 0.01	
c : 0.25	d : 0.22	e : 0.17	[ : 0.11	g : 0.07	f : 0.07	h : 0.03	b : 0.01	" : 0.01	i : 0.01	
c : 0.23	d : 0.20	e : 0.17	b : 0.14	g : 0.07	f : 0.06	[ : 0.04	h : 0.03	i : 0.01	
c : 0.23	d : 0.20	e : 0.17	b : 0.14	g : 0.07	f : 0.06	a : 0.04	h : 0.03	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.23	d : 0.20	e : 0.17	b : 0.14	g : 0.07	f : 0.06	a : 0.04	h : 0.03	i : 0.01	
c : 0.23	d : 0.20	e : 0.17	b : 0.14	g : 0.07	f : 0.07	h : 0.03	] : 0.03	i : 0.01	
c : 0.25	d : 0.20	e : 0.17	f : 0.09	g : 0.07	] : 0.06	3 : 0.03	h : 0.03	b : 0.03	2 : 0.01	i : 0.01	
d : 0.22	e : 0.19	f : 0.09	g : 0.07	] : 0.07	2 : 0.06	b : 0.06	3 : 0.04	h : 0.03	a : 0.03	c : 0.03	6 : 0.01	4 : 0.01	> : 0.01	i : 0.01	
e : 0.22	g : 0.09	f : 0.09	2 : 0.09	] : 0.07	c : 0.07	b : 0.06	3 : 0.04	d : 0.03	: : 0.03	h : 0.03	6 : 0.01	4 : 0.01	5 : 0.01	a : 0.01	> : 0.01	E : 0.01	C : 0.01	i : 0.01	

#score	846.5146314374717
#seq	63
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF036IYW_NSUN2_transcript_m1_run2.txt

#BEAR
eeeeepppppppeeeee	chr17:73031151-73031360(+)$1	209	104	121	18.3581
eeeeepppppppeeeee	chr16:3239569-3239780(+)$1	211	111	128	18.3581
eeeeepppppppeeeee	chr15:45492494-45492734(-)$1	240	99	116	18.3581
eeeeepppppppeeeee	chr6:27599192-27599399(+)$1	207	176	193	18.3581
eeeeepppppppeeeee	chr1:17188367-17188600(+)$1	233	94	111	18.3581
eeeeepppppppeeeee	chr17:73029939-73030150(+)$1	211	87	104	18.3581
eeeeepppppppeeeee	chr5:180618572-180618802(-)$1	230	70	87	18.3581
eeeeepppppppeeeee	chr13:41634772-41634975(-)$1	203	56	73	18.3581
eeeeepppppppeeeee	chr16:3232527-3232732(-)$1	205	73	90	18.3581
gggggpppppppggggg	chr14:21077391-21077595(-)$1	204	54	71	14.1562
eeeeepppppppeeeee	chr2:11691786-11692007(+)$1	221	87	104	18.3581
eeeeepppppppeeeee	chr17:73029950-73030193(+)$1	243	76	93	18.3581
[ddddpppppppdddde	chr2:71273416-71273655(-)$1	239	151	168	14.1146
eeeeepppppppeeeee	chr16:3239588-3239792(+)$1	204	92	109	18.3581
eeeeepppppppeeeee	chr15:89878263-89878494(+)$1	231	88	105	18.3581
gggggpppppppggggg	chr14:21077395-21077622(-)$1	227	81	98	14.1562
eeeeepppppppeeeee	chr16:3241939-3242143(+)$1	204	96	113	18.3581
eeeeepppppppeeeee	chr17:8124078-8124301(-)$1	223	90	107	18.3581
eeeeepppppppeeeee	chr17:37309870-37310087(-)$1	217	76	93	18.3581
eeeeepppppppeeeee	chr16:3232532-3232737(-)$1	205	78	95	18.3581
eeeeepppppppeeeee	chr16:3241952-3242176(+)$1	224	83	100	18.3581
eeeeepppppppeeeee	chr16:3207295-3207510(-)$1	215	80	97	18.3581
eeeeepppppppeeeee	chr6:28806124-28806332(-)$1	208	87	104	18.3581
eeeeepppppppeeeee	chr1:17199038-17199256(+)$1	218	166	183	18.3581
eeeeepppppppeeeee	chr17:19411437-19411648(+)$1	211	103	120	18.3581
eeeeepppppppeeeee	chr16:3239592-3239804(+)$1	212	88	105	18.3581
eeeeepppppppeeeee	chr14:37267487-37267699(-)$1	212	192	209	18.3581
eeeeepppppppeeeee	chr15:45492470-45492694(-)$1	224	59	76	18.3581
eeeeepppppppeeeee	chr17:37309902-37310105(-)$1	203	94	111	18.3581
eeeeepppppppeeeee	chr15:89878253-89878463(+)$1	210	98	115	18.3581
gggggpppppppggggg	chr14:21077383-21077591(-)$1	208	50	67	14.1562
eeeeepppppppeeeee	chr16:3239580-3239788(+)$1	208	100	117	18.3581
eeeeepppppppeeeee	chr6:28806132-28806336(-)$1	204	91	108	18.3581
eeeeepppppppeeeee	chr13:41634759-41634972(-)$1	213	53	70	18.3581
eeeeepppppppeeeee	chr17:73031160-73031363(+)$1	203	95	112	18.3581
=====ppppppp=====	chr12:7052898-7053146(+)$1	248	118	135	13.8737
eeeeepppppppeeeee	chr6:28806141-28806345(-)$1	204	100	117	18.3581
gggggpppppppggggg	chr16:3232550-3232754(-)$1	204	73	90	14.1562
eeeeepppppppeeeee	chr14:37267475-37267687(-)$1	212	180	197	18.3581
eeeeepppppppeeeee	chr19:1383517-1383749(+)$1	232	93	110	18.3581
eeeeepppppppeeeee	chr6:28806136-28806341(-)$1	205	96	113	18.3581
eee[apppppppa]eee	chr10:128256271-128256478(-)$1	207	173	190	16.1993
eeeeepppppppeeeee	chr7:149286054-149286300(-)$1	246	90	107	18.3581
eeeeepppppppeeeee	chr6:28806110-28806324(-)$1	214	79	96	18.3581
bddddpppppppdddde	chr11:66115555-66115768(+)$1	213	92	109	13.7521
eeeeepppppppeeeee	chr2:11691769-11691986(+)$1	217	104	121	18.3581
gggggpppppppggggg	chr16:3232537-3232750(-)$1	213	69	86	14.1562
eeeeepppppppeeeee	chr16:3239604-3239820(+)$1	216	76	93	18.3581
eeeeepppppppeeeee	chr13:41634780-41634997(-)$1	217	78	95	18.3581
gggggpppppppggggg	chr16:3232558-3232766(-)$1	208	85	102	14.1562
gggggpppppppggggg	chr17:8126037-8126247(-)$1	210	50	67	14.1562
eeeeepppppppeeeee	chr1:17188361-17188567(+)$1	206	100	117	18.3581
eeeeepppppppeeeee	chr19:33667912-33668148(+)$1	236	99	116	18.3581
eeeeepppppppeeeee	chr16:3241943-3242152(+)$1	209	92	109	18.3581
eeeeepppppppeeeee	chr17:37309887-37310102(-)$1	215	91	108	18.3581
eeeeepppppppeeeee	chr16:3207317-3207521(-)$1	204	91	108	18.3581
gggggpppppppggggg	chr16:3232554-3232758(-)$1	204	77	94	14.1562
eeeeepppppppeeeee	chr17:73031163-73031377(+)$1	214	92	109	18.3581
eeeeepppppppeeeee	chr16:3241937-3242139(+)$1	202	98	115	18.3581

#otherMatches

#Seq PSSM
gaggguucgagucccuu	chr17:73031151-73031360(+)$1	209	104	121	18.3581
ccggguucaaaucccgg	chr16:3239569-3239780(+)$1	211	111	128	18.3581
cucgguucgaauccgag	chr15:45492494-45492734(-)$1	240	99	116	18.3581
AUGGAUAAAUUUUCCAU	chr6:27599192-27599399(+)$1	207	176	193	18.3581
ccggguucaauucccgg	chr1:17188367-17188600(+)$1	233	94	111	18.3581
cuggccuccuaagccag	chr17:73029939-73030150(+)$1	211	87	104	18.3581
cuggucuuguaaaccag	chr5:180618572-180618802(-)$1	230	70	87	18.3581
ccugguuuucacccagg	chr13:41634772-41634975(-)$1	203	56	73	18.3581
ccggguucaaaucccgg	chr16:3232527-3232732(-)$1	205	73	90	18.3581
cucgcuuagggugcgag	chr14:21077391-21077595(-)$1	204	54	71	14.1562
ccggguucgauucccgg	chr2:11691786-11692007(+)$1	221	87	104	18.3581
cuggccuccuaagccag	chr17:73029950-73030193(+)$1	243	76	93	18.3581
gacucguggucagagug	chr2:71273416-71273655(-)$1	239	151	168	14.1146
ccggguucaaaucccgg	chr16:3239588-3239792(+)$1	204	92	109	18.3581
gcagguucgaguccugc	chr15:89878263-89878494(+)$1	231	88	105	18.3581
cucgcuuagggugcgag	chr14:21077395-21077622(-)$1	227	81	98	14.1562
ccggguucaaaucccgg	chr16:3241939-3242143(+)$1	204	96	113	18.3581
gcguguucaaaucacgu	chr17:8124078-8124301(-)$1	223	90	107	18.3581
cccgguucaaauccggg	chr17:37309870-37310087(-)$1	217	76	93	18.3581
ccggguucaaaucccgg	chr16:3232532-3232737(-)$1	205	78	95	18.3581
ccggguucaaaucccgg	chr16:3241952-3242176(+)$1	224	83	100	18.3581
guggguucgagccccac	chr16:3207295-3207510(-)$1	215	80	97	18.3581
ccggguucaauccccgg	chr6:28806124-28806332(-)$1	208	87	104	18.3581
GGCCUGCUCCAAGGGCC	chr1:17199038-17199256(+)$1	218	166	183	18.3581
gcguguucaagucacgu	chr17:19411437-19411648(+)$1	211	103	120	18.3581
ccggguucaaaucccgg	chr16:3239592-3239804(+)$1	212	88	105	18.3581
GACAGAAAUAAACUGUC	chr14:37267487-37267699(-)$1	212	192	209	18.3581
cucgguucgaauccgag	chr15:45492470-45492694(-)$1	224	59	76	18.3581
cccgguucaaauccggg	chr17:37309902-37310105(-)$1	203	94	111	18.3581
gcagguucgaguccugc	chr15:89878253-89878463(+)$1	210	98	115	18.3581
cucgcuuagggugcgag	chr14:21077383-21077591(-)$1	208	50	67	14.1562
ccggguucaaaucccgg	chr16:3239580-3239788(+)$1	208	100	117	18.3581
ccggguucaauccccgg	chr6:28806132-28806336(-)$1	204	91	108	18.3581
ccugguuuucacccagg	chr13:41634759-41634972(-)$1	213	53	70	18.3581
gaggguucgagucccuu	chr17:73031160-73031363(+)$1	203	95	112	18.3581
ucuggcuuuuuaccgga	chr12:7052898-7053146(+)$1	248	118	135	13.8737
ccggguucaauccccgg	chr6:28806141-28806345(-)$1	204	100	117	18.3581
cucgcuuagggugcgag	chr16:3232550-3232754(-)$1	204	73	90	14.1562
GACAGAAAUAAACUGUC	chr14:37267475-37267687(-)$1	212	180	197	18.3581
ggugguucgagcccacc	chr19:1383517-1383749(+)$1	232	93	110	18.3581
ccggguucaauccccgg	chr6:28806136-28806341(-)$1	205	96	113	18.3581
CAGUGACAACACCUCUG	chr10:128256271-128256478(-)$1	207	173	190	16.1993
cuugacugcagaucaag	chr7:149286054-149286300(-)$1	246	90	107	18.3581
ccggguucaauccccgg	chr6:28806110-28806324(-)$1	214	79	96	18.3581
guggguucgaaucccau	chr11:66115555-66115768(+)$1	213	92	109	13.7521
ccggguucgauucccgg	chr2:11691769-11691986(+)$1	217	104	121	18.3581
cucgcuuagggugcgag	chr16:3232537-3232750(-)$1	213	69	86	14.1562
ccggguucaaaucccgg	chr16:3239604-3239820(+)$1	216	76	93	18.3581
ccugguuuucacccagg	chr13:41634780-41634997(-)$1	217	78	95	18.3581
cucgcuuagggugcgag	chr16:3232558-3232766(-)$1	208	85	102	14.1562
cucgcuucgggugcgag	chr17:8126037-8126247(-)$1	210	50	67	14.1562
ccggguucaauucccgg	chr1:17188361-17188567(+)$1	206	100	117	18.3581
cuggguucgaaucccag	chr19:33667912-33668148(+)$1	236	99	116	18.3581
ccggguucaaaucccgg	chr16:3241943-3242152(+)$1	209	92	109	18.3581
cccgguucaaauccggg	chr17:37309887-37310102(-)$1	215	91	108	18.3581
guggguucgagccccac	chr16:3207317-3207521(-)$1	204	91	108	18.3581
cucgcuuagggugcgag	chr16:3232554-3232758(-)$1	204	77	94	14.1562
gaggguucgagucccuu	chr17:73031163-73031377(+)$1	214	92	109	18.3581
ccggguucaaaucccgg	chr16:3241937-3242139(+)$1	202	98	115	18.3581

#DB
(((((.......)))))	chr17:73031151-73031360(+)$1	1	104	121	18.3581
(((((.......)))))	chr16:3239569-3239780(+)$1	1	111	128	18.3581
(((((.......)))))	chr15:45492494-45492734(-)$1	1	99	116	18.3581
(((((.......)))))	chr6:27599192-27599399(+)$1	1	176	193	18.3581
(((((.......)))))	chr1:17188367-17188600(+)$1	1	94	111	18.3581
(((((.......)))))	chr17:73029939-73030150(+)$1	1	87	104	18.3581
(((((.......)))))	chr5:180618572-180618802(-)$1	1	70	87	18.3581
(((((.......)))))	chr13:41634772-41634975(-)$1	1	56	73	18.3581
(((((.......)))))	chr16:3232527-3232732(-)$1	1	73	90	18.3581
(((((.......)))))	chr14:21077391-21077595(-)$1	1	54	71	14.1562
(((((.......)))))	chr2:11691786-11692007(+)$1	1	87	104	18.3581
(((((.......)))))	chr17:73029950-73030193(+)$1	1	76	93	18.3581
.((((.......)))))	chr2:71273416-71273655(-)$1	1	151	168	14.1146
(((((.......)))))	chr16:3239588-3239792(+)$1	1	92	109	18.3581
(((((.......)))))	chr15:89878263-89878494(+)$1	1	88	105	18.3581
(((((.......)))))	chr14:21077395-21077622(-)$1	1	81	98	14.1562
(((((.......)))))	chr16:3241939-3242143(+)$1	1	96	113	18.3581
(((((.......)))))	chr17:8124078-8124301(-)$1	1	90	107	18.3581
(((((.......)))))	chr17:37309870-37310087(-)$1	1	76	93	18.3581
(((((.......)))))	chr16:3232532-3232737(-)$1	1	78	95	18.3581
(((((.......)))))	chr16:3241952-3242176(+)$1	1	83	100	18.3581
(((((.......)))))	chr16:3207295-3207510(-)$1	1	80	97	18.3581
(((((.......)))))	chr6:28806124-28806332(-)$1	1	87	104	18.3581
(((((.......)))))	chr1:17199038-17199256(+)$1	1	166	183	18.3581
(((((.......)))))	chr17:19411437-19411648(+)$1	1	103	120	18.3581
(((((.......)))))	chr16:3239592-3239804(+)$1	1	88	105	18.3581
(((((.......)))))	chr14:37267487-37267699(-)$1	1	192	209	18.3581
(((((.......)))))	chr15:45492470-45492694(-)$1	1	59	76	18.3581
(((((.......)))))	chr17:37309902-37310105(-)$1	1	94	111	18.3581
(((((.......)))))	chr15:89878253-89878463(+)$1	1	98	115	18.3581
(((((.......)))))	chr14:21077383-21077591(-)$1	1	50	67	14.1562
(((((.......)))))	chr16:3239580-3239788(+)$1	1	100	117	18.3581
(((((.......)))))	chr6:28806132-28806336(-)$1	1	91	108	18.3581
(((((.......)))))	chr13:41634759-41634972(-)$1	1	53	70	18.3581
(((((.......)))))	chr17:73031160-73031363(+)$1	1	95	112	18.3581
(((((.......)))))	chr12:7052898-7053146(+)$1	1	118	135	13.8737
(((((.......)))))	chr6:28806141-28806345(-)$1	1	100	117	18.3581
(((((.......)))))	chr16:3232550-3232754(-)$1	1	73	90	14.1562
(((((.......)))))	chr14:37267475-37267687(-)$1	1	180	197	18.3581
(((((.......)))))	chr19:1383517-1383749(+)$1	1	93	110	18.3581
(((((.......)))))	chr6:28806136-28806341(-)$1	1	96	113	18.3581
(((.(.......).)))	chr10:128256271-128256478(-)$1	1	173	190	16.1993
(((((.......)))))	chr7:149286054-149286300(-)$1	1	90	107	18.3581
(((((.......)))))	chr6:28806110-28806324(-)$1	1	79	96	18.3581
)((((.......))))(	chr11:66115555-66115768(+)$1	1	92	109	13.7521
(((((.......)))))	chr2:11691769-11691986(+)$1	1	104	121	18.3581
(((((.......)))))	chr16:3232537-3232750(-)$1	1	69	86	14.1562
(((((.......)))))	chr16:3239604-3239820(+)$1	1	76	93	18.3581
(((((.......)))))	chr13:41634780-41634997(-)$1	1	78	95	18.3581
(((((.......)))))	chr16:3232558-3232766(-)$1	1	85	102	14.1562
(((((.......)))))	chr17:8126037-8126247(-)$1	1	50	67	14.1562
(((((.......)))))	chr1:17188361-17188567(+)$1	1	100	117	18.3581
(((((.......)))))	chr19:33667912-33668148(+)$1	1	99	116	18.3581
(((((.......)))))	chr16:3241943-3242152(+)$1	1	92	109	18.3581
(((((.......)))))	chr17:37309887-37310102(-)$1	1	91	108	18.3581
(((((.......)))))	chr16:3207317-3207521(-)$1	1	91	108	18.3581
(((((.......)))))	chr16:3232554-3232758(-)$1	1	77	94	14.1562
(((((.......)))))	chr17:73031163-73031377(+)$1	1	92	109	18.3581
(((((.......)))))	chr16:3241937-3242139(+)$1	1	98	115	18.3581

#PSSM
e : 0.81	g : 0.13	[ : 0.01	= : 0.01	b : 0.01	
e : 0.81	g : 0.13	d : 0.03	= : 0.01	
e : 0.81	g : 0.13	d : 0.03	= : 0.01	
e : 0.79	g : 0.13	d : 0.03	= : 0.01	[ : 0.01	
e : 0.79	g : 0.13	d : 0.03	= : 0.01	a : 0.01	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
e : 0.79	g : 0.13	d : 0.03	= : 0.01	a : 0.01	
e : 0.79	g : 0.13	d : 0.03	= : 0.01	] : 0.01	
e : 0.81	g : 0.13	d : 0.03	= : 0.01	
e : 0.81	g : 0.13	d : 0.03	= : 0.01	
e : 0.84	g : 0.13	= : 0.01	

#score	1034.0222729159743
#seq	59
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_CDS_m1_run2.txt

#BEAR
====####ddddrrrrrrrrrdddd22====	chr9:117050686-117050891(+)$1	205	134	165	10.9734
ggggg####cccqqqqqqqqccc22gggggg	chr6:44273289-44273612(-)$1	323	8	39	17.6749
gggggdddd[bbqqqqqqqqbb22dddd]gg	chr4:1804547-1804815(+)$1	268	129	160	14.9224
""a[ccc"""bbqqqqqqqqbb22ccc]agg	chr11:581416-581661(+)$1	245	87	118	16.0028
ggggggffffffqqqqqqqqffffff22ggg	chr20:25471969-25472222(-)$1	253	30	61	13.8421
##eeeee[ddddqqqqqqqqddddeeeee66	chr1:249152264-249152608(-)$1	344	190	221	12.9350
$a[dddd!!cccsssssssssscccddddab	chr20:33934830-33935111(-)$1	281	38	69	11.7743
b[dddddddd[aqqqqqqqqa22dddd4444	chr19:12822103-12822380(-)$1	277	123	154	13.5195
gggg[eeeeesssssssssseeeeegggggg	chr12:132628166-132628508(-)$1	342	41	72	11.2617
dd"""ccc[cccqqqqqqqqccc4444ccc3	chr9:116997826-116998032(+)$1	206	107	138	16.9684
""dddd[bbcccrrrrrrrrrccc4444bb]	chr17:2266292-2266530(+)$1	238	24	55	11.1724
gggggbbcccssssssssssccc]bb22ggg	chr2:74756222-74756506(-)$1	284	228	259	12.2678
========[cccqqqqqqqqccc]=======	chr1:70715971-70716285(+)$1	314	210	241	18.3627
Ca[eeeeecccrrrrrrrrrccc]eeeee]a	chr11:57558859-57559094(+)$1	235	198	229	11.0503
dddd!!ddddbbqqqqqqqqbb]dddd]ddd	chr21:46906731-46906957(+)$1	226	0	31	13.6643
"""bb!!cccssssssssssccc22bb333a	chr6:131206214-131206473(-)$1	259	178	209	12.6864
####dddd[cccqqqqqqqqccc]ddddccc	chr22:50874760-50875023(+)$1	263	119	150	16.5081
&&&ggggggg[aqqqqqqqqa]ggggggg44	chr17:56082180-56082402(-)$1	222	23	54	13.8723
ddcccccc[cccqqqqqqqqcccccc22ccc	chr19:7707217-7707503(+)$1	286	87	118	16.0305
e[ccc####cccqqqqqqqqccc22ccc333	chr14:23528416-23528685(-)$1	269	122	153	17.3152
ff!!eeeeecccqqqqqqqqccc333eeeee	chr14:105241889-105242251(-)$1	362	268	299	16.0583
ggggggg!!cccqqqqqqqqccc22gggggg	chr6:44217946-44218175(+)$1	229	67	98	17.8209
!!bb"""a!!bbqqqqqqqqbb22a4444bb	chr6:31857148-31857448(-)$1	300	86	117	15.0062
eedddd####bbqqqqqqqqbb4444dddd]	chr19:5593786-5594052(-)$1	266	26	57	14.9817
dd==========qqqqqqqq==========]	chr22:41223031-41223298(-)$1	267	72	103	16.4930
iiiiiiiii[bbqqqqqqqqbbiiiiiiiii	chr2:219557280-219557533(+)$1	253	193	224	16.0931
hhhhhh"""cccqqqqqqqqccc]hhhhhhh	chr12:49433507-49433792(-)$1	285	77	108	15.5144
eeeggggggg[aqqqqqqqqa]ggggggg22	chr2:232577096-232577320(+)$1	224	3	34	15.0039
eeee[a[cccssssssssssccc]aeeeee:	chr19:56658260-56658555(+)$1	295	182	213	11.7124
ccc]ccceeeeeqqqqqqqqeeeeedddd[b	chr1:160209853-160210171(-)$1	318	47	78	12.9193
###bb!!cccssssssssssccc22bb4444	chr6:31922229-31922503(-)$1	274	19	50	12.3873
c[==========qqqqqqqq==========]	chr3:186504885-186505145(+)$1	260	217	248	16.8414
cc"""ccc[assssssssssa]ccccccccc	chr6:31936558-31936816(+)$1	258	95	126	12.3918
iiiiiiii[bbrrrrrrrrrbbiiiiiiiii	chr9:116994001-116994215(+)$1	214	138	169	12.3787
bb[a[gggggggqqqqqqqqggggggga]bb	chr3:184081214-184081465(+)$1	251	219	250	14.5108
ddd[dddd[cccqqqqqqqqccc]dddd]dd	chr16:89858283-89858558(-)$1	275	37	68	15.8222
iiiiiiii[cccpppppppccc22iiiiiii	chr2:153573717-153574041(-)$1	324	220	251	11.0624
eee[bb"""cccrrrrrrrrrcccbbeeeee	chr17:74382234-74382492(+)$1	258	59	90	11.1257
ddgggggggcccqqqqqqqqccc4444gggg	chr2:85786023-85786290(-)$1	267	91	122	16.8912
gggg[ccc[cccqqqqqqqqccc]ccc]ggg	chr9:116999171-116999404(+)$1	233	18	49	17.6652
::ddddbb[cccqqqqqqqqccc]bb]dddd	chr19:36303130-36303400(-)$1	270	3	34	13.3774
####ddddcccrrrrrrrrrccc22dddd33	chr20:3897511-3897751(+)$1	240	91	122	12.4378
ggg!!dddd[bbqqqqqqqqbb333dddd22	chr2:233681621-233681852(+)$1	231	122	153	15.1782
iiiii[a!!cccqqqqqqqqccc22a]iiii	chr6:24423763-24424038(+)$1	275	202	233	17.9299
!dddd"""ddddqqqqqqqqdddd22dddd]	chr12:104340987-104341217(+)$1	230	17	48	13.9430
a]ffffff:cccqqqqqqqqccc:eeeee!!	chr20:25457557-25457824(-)$1	267	87	118	12.7960
bccc[bbeeeeeqqqqqqqqeeeee]bb]cc	chr16:685561-685820(-)$1	259	152	183	12.7043
cceeeee!!cccqqqqqqqqccceeeeeddd	chr5:130970546-130970902(-)$1	356	108	139	15.6839
ffff[gggggggwwwwwwwwwwwwwwggggg	chr17:882804-883072(-)$1	268	199	230	11.9203
ggggggg[cccrrrrrrrrrccc]ggggggg	chr7:26235935-26236201(-)$1	266	19	50	13.4264
:ggggggg[bbssssssssssbb]ggggggg	chr16:89836280-89836517(-)$1	237	57	88	11.6859
hh:ggggggg[bbqqqqqqqqbb]ggggggg	chr16:270624-270847(-)$1	223	102	133	12.3625
bb[ccc[cccssssssssssccc]ccc]bb:	chr16:89877236-89877513(-)$1	277	203	234	11.6780
ddddccc!!cccqqqqqqqqccc22cccEEE	chr5:179045042-179045283(-)$1	241	193	224	13.6624
ffff[bb!!cccqqqqqqqqcccbb]fffff	chr17:40270262-40270484(-)$1	222	112	143	14.6744
hhhhhh"""cccqqqqqqqqccchhhhhhhh	chr11:67810082-67810377(+)$1	295	252	283	14.9653
b!!eeeee[bbqqqqqqqqbb]eeeee]bb]	chr1:32833940-32834184(-)$1	244	18	49	12.3572

#otherMatches

#Seq PSSM
GGCGUCCUAGGUGGAAUCUGAGCCUCCCGCU	chr9:117050686-117050891(+)$1	205	134	165	10.9734
AAGGGCCCUGGACCUUAUUUUUCUCCCCUUC	chr6:44273289-44273612(-)$1	323	8	39	17.6749
CUCCGCCUGGCCAAUGUGUCGGAGCGGGACG	chr4:1804547-1804815(+)$1	268	129	160	14.9224
UGUGCAGCAAUGGAUGACGACAGCCUGGAUG	chr11:581416-581661(+)$1	245	87	118	16.0028
UGUCUGACGUGUGAUGUGUGACAUGUUACAG	chr20:25471969-25472222(-)$1	253	30	61	13.8421
CUGGGCGGCCACAUGGAGCAGUGGUGCCUCC	chr1:249152264-249152608(-)$1	344	190	221	12.9350
UGUGUCUAGUCCGAAUGAAGCAGGAAGGCCG	chr20:33934830-33935111(-)$1	281	38	69	11.7743
GAGGCUGUCCCCGACAGUGAGCAGGACAUCA	chr19:12822103-12822380(-)$1	277	123	154	13.5195
GUCUGCCUCGCAGAAAGCAACGAGGAGGCGC	chr12:132628166-132628508(-)$1	342	41	72	11.2617
UAAUUGCAUGAGAUUUUCCCCUCCCCCUGCC	chr9:116997826-116998032(+)$1	206	107	138	16.9684
GACAGCCGAUCACUACUGGACUGACCCCUCU	chr17:2266292-2266530(+)$1	238	24	55	11.1724
UGCUUACCACCUGUAGCACCGUGAGUGAGAG	chr2:74756222-74756506(-)$1	284	228	259	12.2678
UAAAAGUAUGUUUACAAAUUGAUUUAUUUUU	chr1:70715971-70716285(+)$1	314	210	241	18.3627
CGUCUCGGCGCAGCUGGAACGCGUCCGGGUC	chr11:57558859-57559094(+)$1	235	198	229	11.0503
GGGGCUGGGCUGGGUCCUGACACGCUCUCCU	chr21:46906731-46906957(+)$1	226	0	31	13.6643
GGCAGGAGGGAAGUGAGAAGCCCAACUAAAG	chr6:131206214-131206473(-)$1	259	178	209	12.6864
UGGUGAGGAGGCUCGGGGCUGCCCCCUCGGU	chr22:50874760-50875023(+)$1	263	119	150	16.5081
GAAUGCUUUGGAUUAAGGAUUGUGGAGCACA	chr17:56082180-56082402(-)$1	222	23	54	13.8723
UCCUCCCCAGGUAUGAGACCACCGGGCUGAG	chr19:7707217-7707503(+)$1	286	87	118	16.0305
CAGCUGGAGCGAGAGAAACGUCGGGAGCACA	chr14:23528416-23528685(-)$1	269	122	153	17.3152
GCCUGUCCCCACUUCUGCCUGUGCCUGGGGC	chr14:105241889-105242251(-)$1	362	268	299	16.0583
UUUUUGUUACUUAGUUggagaaggaacgaga	chr6:44217946-44218175(+)$1	229	67	98	17.8209
AACUGAACAACUAAGUgaagaggaggaggag	chr6:31857148-31857448(-)$1	300	86	117	15.0062
GAGCGUGAGCGCAGGAAGGAGCAGGAGCGCA	chr19:5593786-5594052(-)$1	266	26	57	14.9817
UCCUGGGGGAAUGCCUGGUAAUUUUCCCGGA	chr22:41223031-41223298(-)$1	267	72	103	16.4930
GAGGAAUUGAGGAGGCUAGCCCCAGUUUUUC	chr2:219557280-219557533(+)$1	253	193	224	16.0931
CGUCGGUUCUGCCACCACCUGCACCCGACGG	chr12:49433507-49433792(-)$1	285	77	108	15.5144
AGGAGCCACAGUAGGAGGGAAGUGUGGUUUA	chr2:232577096-232577320(+)$1	224	3	34	15.0039
ACCAAGGAGCAGAUGUUGGAGCUGCUGGUGC	chr19:56658260-56658555(+)$1	295	182	213	11.7124
CUGAAGAGGGGAGGGAGACAUCCUCAGGCAU	chr1:160209853-160210171(-)$1	318	47	78	12.9193
acagagaccgagaucgggagcgggaucgaga	chr6:31922229-31922503(-)$1	274	19	50	12.3873
CUACAAUAUAGCUGCUAAGUGCUGUGUUGUC	chr3:186504885-186505145(+)$1	260	217	248	16.8414
CGAACCCUGGGUUAUGUGGACGAGGCGGGCA	chr6:31936558-31936816(+)$1	258	95	126	12.3918
UGAUAAGGUGAUCUGAAUACUCCCUUAUUGC	chr9:116994001-116994215(+)$1	214	138	169	12.3787
CUUGUGGCCUGCCCCUACCAGCAGGUCCUGG	chr3:184081214-184081465(+)$1	251	219	250	14.5108
AUUGGUUUGCUUGGAUAUUGAAGGGAGCGGA	chr16:89858283-89858558(-)$1	275	37	68	15.8222
GAGCGGAGAUUGUCCGGCUCAAGCCUCUGCU	chr2:153573717-153574041(-)$1	324	220	251	11.0624
CCCUGCAGAGCGGCGGAACCACGCGCGGGAG	chr17:74382234-74382492(+)$1	258	59	90	11.1257
GGGUUCUUGAUGGUGCUAGACAUUCCCCAGG	chr2:85786023-85786290(-)$1	267	91	122	16.8912
AGGACUGGGCGGCUGUUCACCUGGCCAUUUC	chr9:116999171-116999404(+)$1	233	18	49	17.6652
CCGUCUAUGGGCAGUUUGUGGCUGGUGAGAC	chr19:36303130-36303400(-)$1	270	3	34	13.3774
GAGAGGCUGUCAGUAAAGAGGACCUGGCCAG	chr20:3897511-3897751(+)$1	240	91	122	12.4378
UAUGUAUCUGGGAACUCUGACCAUAGGAUUA	chr2:233681621-233681852(+)$1	231	122	153	15.1782
GGAAACUUCUGAUACUCUUUUUAUUAUUUUC	chr6:24423763-24424038(+)$1	275	202	233	17.9299
ACAUUAAUUAUGAUUUUAUACAUAUAAAUGA	chr12:104340987-104341217(+)$1	230	17	48	13.9430
CUACUUCCACAGGAGAGAGGCUGAGGCGGAG	chr20:25457557-25457824(-)$1	267	87	118	12.7960
CUGGACCUGUUGCUCUGCAUCAACAUGGCCC	chr16:685561-685820(-)$1	259	152	183	12.7043
CCGCUACCUAGUGUGAAUGAACUGUGGCGUG	chr5:130970546-130970902(-)$1	356	108	139	15.6839
GGCGGCGGCGAGGAGGUGGACGUGCACUCGC	chr17:882804-883072(-)$1	268	199	230	11.9203
GAGGAGGUAAUUUUAAUUCUGUUUCUUCUUU	chr7:26235935-26236201(-)$1	266	19	50	13.4264
UGCUCUGCCACCCUCAUUCUCGUUGCAGGGC	chr16:89836280-89836517(-)$1	237	57	88	11.6859
GCAUGGAUUUAGGAGAAUGUACCAAAAUCCA	chr16:270624-270847(-)$1	223	102	133	12.3625
CCUGCCCGUUGUUACUUUUAAGCUGGUUGGG	chr16:89877236-89877513(-)$1	277	203	234	11.6780
UAUUUGAUUGAUUGUACUUUGUCUUUCAGGC	chr5:179045042-179045283(-)$1	241	193	224	13.6624
UGGGAGUCAGGCUUCACCAUGCCACCCUCAG	chr17:40270262-40270484(-)$1	222	112	143	14.6744
GCUCCCACCCAGGCAGGAGACUGGGGGGCUG	chr11:67810082-67810377(+)$1	295	252	283	14.9653
GGCUCGUGGUUCCAGGCUCAAGCACGGACAU	chr1:32833940-32834184(-)$1	244	18	49	12.3572

#DB
((((....((((.........))))..))))	chr9:117050686-117050891(+)$1	1	134	165	10.9734
(((((....(((........)))..))))))	chr6:44273289-44273612(-)$1	1	8	39	17.6749
(((((((((.((........))..)))).))	chr4:1804547-1804815(+)$1	1	129	160	14.9224
..(.(((...((........))..))).)))	chr11:581416-581661(+)$1	1	87	118	16.0028
((((((((((((........))))))..)))	chr20:25471969-25472222(-)$1	1	30	61	13.8421
..(((((.((((........)))))))))..	chr1:249152264-249152608(-)$1	1	190	221	12.9350
.(.((((..(((..........)))))))))	chr20:33934830-33935111(-)$1	1	38	69	11.7743
(.((((((((.(........)..))))....	chr19:12822103-12822380(-)$1	1	123	154	13.5195
((((.(((((..........)))))))))))	chr12:132628166-132628508(-)$1	1	41	72	11.2617
((...(((.(((........)))....))).	chr9:116997826-116998032(+)$1	1	107	138	16.9684
..((((.(((((.........)))....)).	chr17:2266292-2266530(+)$1	1	24	55	11.1724
((((((((((..........))).))..)))	chr2:74756222-74756506(-)$1	1	228	259	12.2678
((((((((.(((........))).)))))))	chr1:70715971-70716285(+)$1	1	210	241	18.3627
)(.((((((((.........))).))))).)	chr11:57558859-57559094(+)$1	1	198	229	11.0503
((((..((((((........)).)))).)))	chr21:46906731-46906957(+)$1	1	0	31	13.6643
...((..(((..........)))..))...)	chr6:131206214-131206473(-)$1	1	178	209	12.6864
....((((.(((........))).)))))))	chr22:50874760-50875023(+)$1	1	119	150	16.5081
...(((((((.(........).)))))))..	chr17:56082180-56082402(-)$1	1	23	54	13.8723
((((((((.(((........))))))..)))	chr19:7707217-7707503(+)$1	1	87	118	16.0305
(.(((....(((........)))..)))...	chr14:23528416-23528685(-)$1	1	122	153	17.3152
((..((((((((........)))...)))))	chr14:105241889-105242251(-)$1	1	268	299	16.0583
(((((((..(((........)))..))))))	chr6:44217946-44218175(+)$1	1	67	98	17.8209
..((...(..((........))..)....))	chr6:31857148-31857448(-)$1	1	86	117	15.0062
((((((....((........))....)))).	chr19:5593786-5594052(-)$1	1	26	57	14.9817
((((((((((((........)))))))))).	chr22:41223031-41223298(-)$1	1	72	103	16.4930
(((((((((.((........)))))))))))	chr2:219557280-219557533(+)$1	1	193	224	16.0931
((((((...(((........))).)))))))	chr12:49433507-49433792(-)$1	1	77	108	15.5144
((((((((((.(........).)))))))..	chr2:232577096-232577320(+)$1	1	3	34	15.0039
((((.(.(((..........))).)))))).	chr19:56658260-56658555(+)$1	1	182	213	11.7124
))).)))(((((........)))))((((.(	chr1:160209853-160210171(-)$1	1	47	78	12.9193
...((..(((..........)))..))....	chr6:31922229-31922503(-)$1	1	19	50	12.3873
(.((((((((((........)))))))))).	chr3:186504885-186505145(+)$1	1	217	248	16.8414
((...(((.(..........).)))))))))	chr6:31936558-31936816(+)$1	1	95	126	12.3918
((((((((.((.........)))))))))))	chr9:116994001-116994215(+)$1	1	138	169	12.3787
((.(.(((((((........)))))))).))	chr3:184081214-184081465(+)$1	1	219	250	14.5108
(((.((((.(((........))).)))).))	chr16:89858283-89858558(-)$1	1	37	68	15.8222
((((((((.(((.......)))..)))))))	chr2:153573717-153574041(-)$1	1	220	251	11.0624
(((.((...(((.........))))))))))	chr17:74382234-74382492(+)$1	1	59	90	11.1257
))((((((((((........)))....))))	chr2:85786023-85786290(-)$1	1	91	122	16.8912
((((.(((.(((........))).))).)))	chr9:116999171-116999404(+)$1	1	18	49	17.6652
..((((((.(((........))).)).))))	chr19:36303130-36303400(-)$1	1	3	34	13.3774
....(((((((.........)))..))))..	chr20:3897511-3897751(+)$1	1	91	122	12.4378
(((..((((.((........))...))))..	chr2:233681621-233681852(+)$1	1	122	153	15.1782
(((((.(..(((........)))..).))))	chr6:24423763-24424038(+)$1	1	202	233	17.9299
.((((...((((........))))..)))).	chr12:104340987-104341217(+)$1	1	17	48	13.9430
).)))))).(((........))).(((((..	chr20:25457557-25457824(-)$1	1	87	118	12.7960
)(((.(((((((........))))).)).))	chr16:685561-685820(-)$1	1	152	183	12.7043
))(((((..(((........))))))))(((	chr5:130970546-130970902(-)$1	1	108	139	15.6839
((((.(((((((..............)))))	chr17:882804-883072(-)$1	1	199	230	11.9203
(((((((.(((.........))).)))))))	chr7:26235935-26236201(-)$1	1	19	50	13.4264
.(((((((.((..........)).)))))))	chr16:89836280-89836517(-)$1	1	57	88	11.6859
)).(((((((.((........)).)))))))	chr16:270624-270847(-)$1	1	102	133	12.3625
((.(((.(((..........))).))).)).	chr16:89877236-89877513(-)$1	1	203	234	11.6780
))))(((..(((........)))..))))))	chr5:179045042-179045283(-)$1	1	193	224	13.6624
((((.((..(((........))))).)))))	chr17:40270262-40270484(-)$1	1	112	143	14.6744
((((((...(((........)))))))))))	chr11:67810082-67810377(+)$1	1	252	283	14.9653
(..(((((.((........)).))))).)).	chr1:32833940-32834184(-)$1	1	18	49	12.3572

#PSSM
g : 0.15	d : 0.12	b : 0.08	e : 0.08	# : 0.07	i : 0.07	c : 0.07	" : 0.05	f : 0.05	h : 0.05	= : 0.03	! : 0.03	: : 0.03	$ : 0.01	C : 0.01	& : 0.01	a : 0.01	
g : 0.17	d : 0.14	# : 0.07	e : 0.07	i : 0.07	c : 0.07	" : 0.05	[ : 0.05	f : 0.05	h : 0.05	= : 0.03	a : 0.03	! : 0.03	b : 0.03	& : 0.01	: : 0.01	] : 0.01	
g : 0.19	d : 0.14	e : 0.08	= : 0.07	[ : 0.07	c : 0.07	i : 0.07	" : 0.05	# : 0.05	f : 0.05	! : 0.03	h : 0.03	a : 0.01	& : 0.01	b : 0.01	: : 0.01	
g : 0.22	d : 0.14	e : 0.08	= : 0.07	c : 0.07	i : 0.07	[ : 0.05	b : 0.05	f : 0.05	" : 0.03	# : 0.03	! : 0.03	h : 0.03	] : 0.01	a : 0.01	
g : 0.19	d : 0.15	[ : 0.12	c : 0.10	e : 0.08	i : 0.07	" : 0.05	= : 0.05	b : 0.05	! : 0.03	h : 0.03	# : 0.01	f : 0.01	
d : 0.17	g : 0.17	c : 0.14	e : 0.10	b : 0.07	# : 0.05	= : 0.05	! : 0.05	i : 0.05	" : 0.03	h : 0.03	a : 0.01	[ : 0.01	f : 0.01	
g : 0.15	d : 0.14	c : 0.12	e : 0.10	" : 0.08	# : 0.07	b : 0.07	[ : 0.05	= : 0.05	i : 0.05	f : 0.03	! : 0.03	a : 0.01	
c : 0.15	d : 0.12	g : 0.12	! : 0.10	e : 0.10	" : 0.08	# : 0.07	= : 0.05	i : 0.05	f : 0.03	[ : 0.03	b : 0.03	a : 0.01	
[ : 0.21	c : 0.14	d : 0.12	! : 0.12	g : 0.10	" : 0.07	e : 0.07	# : 0.05	= : 0.03	f : 0.01	b : 0.01	i : 0.01	: : 0.01	
c : 0.54	d : 0.08	g : 0.08	[ : 0.05	e : 0.05	b : 0.05	= : 0.03	" : 0.01	f : 0.01	! : 0.01	# : 0.01	a : 0.01	
c : 0.45	b : 0.17	s : 0.12	[ : 0.07	d : 0.05	= : 0.03	e : 0.03	g : 0.03	f : 0.01	
c : 0.40	b : 0.14	s : 0.14	r : 0.07	d : 0.05	a : 0.05	= : 0.03	e : 0.03	g : 0.03	f : 0.01	q : 0.01	
q : 0.66	s : 0.15	r : 0.12	p : 0.01	w : 0.01	b : 0.01	
q : 0.68	s : 0.15	r : 0.12	p : 0.01	w : 0.01	
q : 0.68	s : 0.15	r : 0.12	p : 0.01	w : 0.01	
q : 0.68	s : 0.15	r : 0.12	p : 0.01	w : 0.01	
q : 0.68	s : 0.15	r : 0.12	p : 0.01	w : 0.01	
q : 0.68	s : 0.15	r : 0.12	p : 0.01	w : 0.01	
q : 0.68	s : 0.15	r : 0.12	p : 0.01	w : 0.01	
q : 0.66	s : 0.15	r : 0.12	c : 0.01	w : 0.01	b : 0.01	
c : 0.49	b : 0.15	a : 0.07	r : 0.05	e : 0.05	d : 0.03	s : 0.03	= : 0.03	f : 0.01	g : 0.01	w : 0.01	q : 0.01	
c : 0.52	b : 0.17	] : 0.07	d : 0.05	e : 0.05	= : 0.03	f : 0.01	s : 0.01	2 : 0.01	g : 0.01	w : 0.01	
c : 0.54	2 : 0.08	e : 0.07	d : 0.05	g : 0.05	= : 0.03	i : 0.03	b : 0.03	f : 0.01	] : 0.01	4 : 0.01	3 : 0.01	w : 0.01	
] : 0.22	2 : 0.21	d : 0.08	c : 0.08	e : 0.08	4 : 0.05	g : 0.05	3 : 0.03	= : 0.03	i : 0.03	f : 0.01	: : 0.01	w : 0.01	b : 0.01	h : 0.01	
2 : 0.15	e : 0.14	d : 0.10	c : 0.10	g : 0.10	4 : 0.07	b : 0.07	= : 0.05	i : 0.05	3 : 0.03	a : 0.03	h : 0.03	f : 0.01	w : 0.01	
g : 0.15	d : 0.15	c : 0.12	e : 0.10	4 : 0.08	b : 0.08	= : 0.05	i : 0.05	2 : 0.03	h : 0.03	] : 0.03	f : 0.01	3 : 0.01	a : 0.01	w : 0.01	
d : 0.19	g : 0.17	e : 0.14	c : 0.10	2 : 0.07	4 : 0.07	= : 0.05	b : 0.05	i : 0.05	h : 0.03	] : 0.03	f : 0.01	
g : 0.17	d : 0.17	e : 0.12	] : 0.08	= : 0.07	4 : 0.07	c : 0.07	i : 0.07	2 : 0.05	h : 0.03	3 : 0.01	a : 0.01	b : 0.01	f : 0.01	
g : 0.22	d : 0.15	e : 0.10	= : 0.07	] : 0.07	c : 0.07	i : 0.07	4 : 0.05	b : 0.05	3 : 0.03	h : 0.03	a : 0.01	E : 0.01	f : 0.01	
g : 0.22	d : 0.10	c : 0.08	b : 0.08	= : 0.07	i : 0.07	4 : 0.05	3 : 0.05	e : 0.05	h : 0.03	2 : 0.03	6 : 0.01	a : 0.01	] : 0.01	[ : 0.01	! : 0.01	E : 0.01	f : 0.01	
g : 0.22	] : 0.10	b : 0.07	d : 0.07	c : 0.07	i : 0.07	4 : 0.05	3 : 0.05	= : 0.03	a : 0.03	e : 0.03	h : 0.03	2 : 0.03	: : 0.03	6 : 0.01	! : 0.01	E : 0.01	f : 0.01	

#score	806.2699176097576
#seq	57
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_CDS_m2_run1.txt

#BEAR
ccc[gggggggmmmmgggggggccc	chr10:73122155-73122400(+)$1	245	154	179	9.1151
bb[ccc[ddddmmmmdddd]ccc]b	chr12:69746941-69747191(+)$1	250	2	27	11.0205
bbiiiiiiiiimmmmiiiiiiiii]	chr9:95013903-95014209(-)$1	306	26	51	9.3078
===[a!!cccnnnnnccc22a]===	chr2:21228412-21228641(-)$1	229	80	105	8.7372
===========mmmm==========	chr7:139824259-139824537(-)$1	278	98	123	10.6125
$$$$$ddddoooooodddd4444ff	chr19:9940575-9940842(+)$1	267	65	90	8.9898
ggggggg[cccooooooccc22ggg	chr2:21229568-21229811(-)$1	243	3	28	9.0830
cc!!ccc[cccmmmmcccccc]ccc	chr2:223773511-223773765(+)$1	254	167	192	10.2644
"""bb[eeeeemmmmeeeee]bb33	chr15:44086012-44086250(+)$1	238	186	211	9.3605
cc[bb[eeeeeooooooeeeee]bb	chr2:21230223-21230447(-)$1	224	77	102	7.5499
ggggggg[cccmmmmccc]gggggg	chr4:74320875-74321097(+)$1	222	1	26	9.8123
==========oooooo=========	chr3:42660490-42660771(+)$1	281	3	28	9.7481
=======!!bbmmmmbb22======	chr3:120363158-120363400(-)$1	242	156	181	8.8760
a[iiiiiiiiillliiiiiiiii]a	chr4:74269934-74270160(+)$1	226	166	191	8.7412
dd!!a!!cccooooooccc22a22d	chr4:74275015-74275235(+)$1	220	126	151	9.0649
gggggg!!accclllccc]a22ggg	chr16:84214610-84214864(-)$1	254	7	32	9.0315
gggggg[cccooooooccc22gggg	chr2:21229662-21229873(-)$1	211	66	91	9.3741
##ccc[a[cccmmmmccc]a]ccc2	chr3:128634294-128634571(+)$1	277	66	91	10.2410
ccc####ddddmmmmdddd4444cc	chr12:46757660-46757886(-)$1	226	69	94	11.8762
::ccc!!ddddmmmmdddd22ccc:	chr2:21231375-21231649(-)$1	274	29	54	8.8556
b!!ccc[ddddoooooodddd333c	chr5:179046281-179046532(-)$1	251	134	159	10.7642
ccbbbb[ddddmmmmdddd]bb333	chr2:242276811-242277094(+)$1	283	40	65	10.1442
hh[ccc!!ccclllccc22ccc333	chr10:121336435-121336712(-)$1	277	156	181	8.8018
"""bb[eeeeemmmmeeeee]bb33	chr15:44086050-44086261(+)$1	211	148	173	9.3605
h!!ccc"""bbmmmmbb333ccc]h	chr5:42804679-42804959(-)$1	280	173	198	8.6968
ff[ccc[ddddnnnnndddd]cccf	chr4:74269985-74270190(+)$1	205	168	193	9.4141
ccc[cccddddmmmmdddd4444cc	chr2:20482554-20482856(-)$1	302	0	25	11.3302
####eeeeeooooooeeeee4444a	chr1:151237594-151237846(+)$1	252	138	163	8.6391
[a[a!!eeeeemmmmeeeee22a]a	chr2:178081392-178081637(+)$1	245	39	64	9.9555
eeeeccc[cccmmmmcccccc333e	chr10:114154622-114154875(+)$1	253	204	229	9.3869
=!!ccc[ddddmmmmddddccc===	chr17:48827964-48828234(+)$1	270	228	253	11.7974
GGGccc[ddddmmmmdddd]ccc::	chr12:69746910-69747124(+)$1	214	33	58	8.0339
###ccc[ddddmmmmdddd]ccc44	chr6:99852276-99852575(-)$1	299	92	117	11.7278
[cccgggggggmmmmggggggg]cc	chr12:46756720-46756967(-)$1	247	110	135	9.1056
ffffff[ddddoooooodddd]fff	chr4:166418658-166418864(+)$1	206	135	160	8.6120
$$iiiiiiiiimmmmiiiiiiiiid	chr16:67174374-67174620(+)$1	246	101	126	9.3045
ffff"""ddddnnnnndddd333ff	chr4:74321269-74321504(+)$1	235	10	35	9.5848
[ffffff[cccmmmmccc]ffffff	chr10:101595926-101596181(+)$1	255	134	159	8.1194
ffff"""ddddnnnnndddd333ff	chr4:74321237-74321469(+)$1	232	42	67	9.5848
c[dddd!!ddddllldddd4444dd	chr4:155533443-155533684(-)$1	241	11	36	9.0105
gg$$$$$ddddnnnnnddddggggg	chr10:98292733-98293011(-)$1	278	243	268	8.7797
dd$$$$$ddddmmmmdddd333ddd	chr1:46733162-46733444(+)$1	282	54	79	10.4897
gg$$$$$ddddmmmmddddgggggg	chr17:76200902-76201159(+)$1	257	105	130	10.6988
!!ccc"""cccmmmmccc22ccc22	chr4:74275009-74275215(+)$1	206	146	171	10.1994
bb[bb!!eeeeellleeeee22bb]	chr6:26217065-26217332(+)$1	267	182	207	7.7589
ggg"""eeeeemmmmeeeeeggggg	chr2:118854005-118854250(+)$1	245	111	136	9.6297
cc$$$$$ddddmmmmdddd22cccE	chr2:21231637-21231889(-)$1	252	209	234	10.0087
GGGccc[ddddmmmmdddd]ccc::	chr12:69746924-69747141(+)$1	217	19	44	8.0339
ddd[bb[ddddmmmmddddbb]ddd	chr4:155533583-155533805(-)$1	222	114	139	8.8688
cccccc[ddddlllddddccc]ccc	chr17:37009849-37010080(-)$1	231	156	181	9.8118
===========mmmm==========	chr19:18390715-18390967(-)$1	252	94	119	10.6125
ccc[bb[ddddlllddddbb]ccc:	chr17:19481208-19481459(+)$1	251	114	139	7.9836
ggggggg[cccmmmmccc]gggggg	chr4:74320867-74321075(+)$1	208	9	34	9.8123
ff[ccc[ddddnnnnndddd]cccf	chr4:74269976-74270185(+)$1	209	177	202	9.4141
$$$$$ddddoooooodddd4444ff	chr5:37327592-37327848(-)$1	256	122	147	8.9898
ggccc!!ddddoooooodddd333c	chr14:24114009-24114245(+)$1	236	14	39	10.7554
b[bb!!eeeeemmmmeeeee22bb]	chr10:102710393-102710655(+)$1	262	137	162	8.6729

#otherMatches

#Seq PSSM
GCUUGGGCUUAACACUGGGCUCAGC	chr10:73122155-73122400(+)$1	245	154	179	9.1151
GAAAUCGUUGUCAAAACAGAGAUGU	chr12:69746941-69747191(+)$1	250	2	27	11.0205
CCUUUUUACUCAUUAGGGUGAAAAU	chr9:95013903-95014209(-)$1	306	26	51	9.3078
GCUGAUAAAUUCAUUAUUCCUGGGC	chr2:21228412-21228641(-)$1	229	80	105	8.7372
ACCUUAUUUGUUCCUACAGGUAAGG	chr7:139824259-139824537(-)$1	278	98	123	10.6125
AUGAAAUCCACGAUGGGAUGAACCU	chr19:9940575-9940842(+)$1	267	65	90	8.9898
GAAAUCUCAAGCUUUCUCUUCCAGA	chr2:21229568-21229811(-)$1	243	3	28	9.0830
ACCUGAUUCUGCAUACAGAUCUGUU	chr2:223773511-223773765(+)$1	254	167	192	10.2644
UUCCUGUGGGGCUCACCCCAAAGUA	chr15:44086012-44086250(+)$1	238	186	211	9.3605
GAUUUCUUAAACAUUCCUUUAACAA	chr2:21230223-21230447(-)$1	224	77	102	7.5499
GAUUGUAGAGUGUUAACUGUAUGAU	chr4:74320875-74321097(+)$1	222	1	26	9.8123
UUUUUUUUUUUUUUCCAGGAGAGAA	chr3:42660490-42660771(+)$1	281	3	28	9.7481
CUGGUAUGAGGAUCGCCAAGUACCA	chr3:120363158-120363400(-)$1	242	156	181	8.8760
GGGUGUGUUUCGUCGAGAUGCACGU	chr4:74269934-74270160(+)$1	226	166	191	8.7412
UAUAAAGCUGCUUUUACAGAAUGUU	chr4:74275015-74275235(+)$1	220	126	151	9.0649
CUGGGCGAGGACAGCGUCACCGGCC	chr16:84214610-84214864(-)$1	254	7	32	9.0315
AAAUCUCAAGCUUUCUCUUCCAGAU	chr2:21229662-21229873(-)$1	211	66	91	9.3741
UGGCUGAGAGGUAAUCCUGUGAGUA	chr3:128634294-128634571(+)$1	277	66	91	10.2410
AGAUUAAGUAGAUUUUUACGUUUUC	chr12:46757660-46757886(-)$1	226	69	94	11.8762
CCCUGCCAGACUUCCGUUUACCAGA	chr2:21231375-21231649(-)$1	274	29	54	8.8556
CGUGCCAAAUGGGAUAACAUUGCCG	chr5:179046281-179046532(-)$1	251	134	159	10.7642
GAGAGCGGCUUGAACAGGCGGCACA	chr2:242276811-242277094(+)$1	283	40	65	10.1442
CAUCUUACAUGUCACAUAAAAGCUU	chr10:121336435-121336712(-)$1	277	156	181	8.8018
UUCCUGUGGGGCUCACCCCAAAGUA	chr15:44086050-44086261(+)$1	211	148	173	9.3605
AAAAGAAAUGUGGAAACUGCUCUCU	chr5:42804679-42804959(-)$1	280	173	198	8.6968
UUUAUUCUAUUUUCCCAGUAAAAUA	chr4:74269985-74270190(+)$1	205	168	193	9.4141
UGGAAGCAGUUCUUUGACUAAUAGC	chr2:20482554-20482856(-)$1	302	0	25	11.3302
GCAUUGACUUAAUUUGGUCAUAAAC	chr1:151237594-151237846(+)$1	252	138	163	8.6391
GGGUCGCGGAGGGAACUUUGGAGGU	chr2:178081392-178081637(+)$1	245	39	64	9.9555
UCUUGACCUGAACAAUCAGUCUGUG	chr10:114154622-114154875(+)$1	253	204	229	9.3869
AGUCCUGCAAAACAUUUUGAGGUAC	chr17:48827964-48828234(+)$1	270	228	253	11.7974
GAAAUCGUUGUCAAAACAGAGAUGU	chr12:69746910-69747124(+)$1	214	33	58	8.0339
GAAAGGUAUAUUUUGGUGUUUCUGG	chr6:99852276-99852575(-)$1	299	92	117	11.7278
CGUCUGGCUGUGUUAAUGGCUGUGA	chr12:46756720-46756967(-)$1	247	110	135	9.1056
CUAUAUAAUGUAGUAUGAUGUAAUG	chr4:166418658-166418864(+)$1	206	135	160	8.6120
UAACUACUUCACUCUUGGAGUGGUA	chr16:67174374-67174620(+)$1	246	101	126	9.3045
AUAGAACCAGUUACUUACUGCACCU	chr4:74321269-74321504(+)$1	235	10	35	9.5848
UGGGUAUUUACCCAUGUGUGUACUU	chr10:101595926-101596181(+)$1	255	134	159	8.1194
AUAGAACCAGUUACUUACUGCACCU	chr4:74321237-74321469(+)$1	232	42	67	9.5848
UCUUCACAAAACGUUGUUUAAAAUG	chr4:155533443-155533684(-)$1	241	11	36	9.0105
AUAUAUAAGUUCUUAAGGCUGUUGU	chr10:98292733-98293011(-)$1	278	243	268	8.7797
UCCCAUCCAGAAUGAUCUGCUUGAG	chr1:46733162-46733444(+)$1	282	54	79	10.4897
CUGUUGGACCUCAGUGGGUGGGAGG	chr17:76200902-76201159(+)$1	257	105	130	10.6988
UACAGAAUGUUGCCAAGCUGCUGAU	chr4:74275009-74275215(+)$1	206	146	171	10.1994
AAAACGCGUUCUUCCAGGGCCGGUC	chr6:26217065-26217332(+)$1	267	182	207	7.7589
CUGAACCUAUGAAACCAUGGCAGAA	chr2:118854005-118854250(+)$1	245	111	136	9.6297
CCGUUCCAGAUAUAUAUCUCAGGGA	chr2:21231637-21231889(-)$1	252	209	234	10.0087
GAAAUCGUUGUCAAAACAGAGAUGU	chr12:69746924-69747141(+)$1	217	19	44	8.0339
GUGUAGCAGUAAGUGUGCUCUUCAC	chr4:155533583-155533805(-)$1	222	114	139	8.8688
CCACCAUCUGUCGUGCAGUGGCUGG	chr17:37009849-37010080(-)$1	231	156	181	9.8118
uuuuuuuuuucuuuGGAAGAGAGAA	chr19:18390715-18390967(-)$1	252	94	119	10.6125
ucuugcucugucaugcaggcuggag	chr17:19481208-19481459(+)$1	251	114	139	7.9836
GAUUGUAGAGUGUUAACUGUAUGAU	chr4:74320867-74321075(+)$1	208	9	34	9.8123
UUUAUUCUAUUUUCCCAGUAAAAUA	chr4:74269976-74270185(+)$1	209	177	202	9.4141
GUUUGUCAUGAAAUAAUGAAUUAUU	chr5:37327592-37327848(-)$1	256	122	147	8.9898
CCCUUUGCCCAGUUUCAUGGGAAUG	chr14:24114009-24114245(+)$1	236	14	39	10.7554
UUGCUGCUGUUUUUAAAUAGGUGUU	chr10:102710393-102710655(+)$1	262	137	162	8.6729

#DB
(((.(((((((....))))))))))	chr10:73122155-73122400(+)$1	1	154	179	9.1151
((.(((.((((....)))).))).)	chr12:69746941-69747191(+)$1	1	2	27	11.0205
(((((((((((....))))))))).	chr9:95013903-95014209(-)$1	1	26	51	9.3078
(((.(..(((.....)))..).)))	chr2:21228412-21228641(-)$1	1	80	105	8.7372
(((((((((((....))))))))))	chr7:139824259-139824537(-)$1	1	98	123	10.6125
.....((((......))))....))	chr19:9940575-9940842(+)$1	1	65	90	8.9898
(((((((.(((......)))..)))	chr2:21229568-21229811(-)$1	1	3	28	9.0830
((..(((.(((....)))))).)))	chr2:223773511-223773765(+)$1	1	167	192	10.2644
...((.(((((....))))).))..	chr15:44086012-44086250(+)$1	1	186	211	9.3605
((.((.(((((......))))).))	chr2:21230223-21230447(-)$1	1	77	102	7.5499
(((((((.(((....))).))))))	chr4:74320875-74321097(+)$1	1	1	26	9.8123
((((((((((......)))))))))	chr3:42660490-42660771(+)$1	1	3	28	9.7481
(((((((..((....))..))))))	chr3:120363158-120363400(-)$1	1	156	181	8.8760
(.(((((((((...))))))))).)	chr4:74269934-74270160(+)$1	1	166	191	8.7412
((..(..(((......)))..)..)	chr4:74275015-74275235(+)$1	1	126	151	9.0649
((((((..((((...))).)..)))	chr16:84214610-84214864(-)$1	1	7	32	9.0315
((((((.(((......)))..))))	chr2:21229662-21229873(-)$1	1	66	91	9.3741
..(((.(.(((....))).).))).	chr3:128634294-128634571(+)$1	1	66	91	10.2410
(((....((((....))))....))	chr12:46757660-46757886(-)$1	1	69	94	11.8762
..(((..((((....))))..))).	chr2:21231375-21231649(-)$1	1	29	54	8.8556
(..(((.((((......))))...)	chr5:179046281-179046532(-)$1	1	134	159	10.7642
((((((.((((....)))).))...	chr2:242276811-242277094(+)$1	1	40	65	10.1442
((.(((..(((...)))..)))...	chr10:121336435-121336712(-)$1	1	156	181	8.8018
...((.(((((....))))).))..	chr15:44086050-44086261(+)$1	1	148	173	9.3605
(..(((...((....))...))).)	chr5:42804679-42804959(-)$1	1	173	198	8.6968
((.(((.((((.....)))).))))	chr4:74269985-74270190(+)$1	1	168	193	9.4141
(((.(((((((....))))....))	chr2:20482554-20482856(-)$1	1	0	25	11.3302
....(((((......)))))....)	chr1:151237594-151237846(+)$1	1	138	163	8.6391
.(.(..(((((....)))))..).)	chr2:178081392-178081637(+)$1	1	39	64	9.9555
(((((((.(((....))))))...)	chr10:114154622-114154875(+)$1	1	204	229	9.3869
(..(((.((((....))))))))))	chr17:48827964-48828234(+)$1	1	228	253	11.7974
((((((.((((....)))).)))..	chr12:69746910-69747124(+)$1	1	33	58	8.0339
...(((.((((....)))).)))..	chr6:99852276-99852575(-)$1	1	92	117	11.7278
.((((((((((....))))))).))	chr12:46756720-46756967(-)$1	1	110	135	9.1056
((((((.((((......)))).)))	chr4:166418658-166418864(+)$1	1	135	160	8.6120
..(((((((((....))))))))))	chr16:67174374-67174620(+)$1	1	101	126	9.3045
((((...((((.....))))...))	chr4:74321269-74321504(+)$1	1	10	35	9.5848
.((((((.(((....))).))))))	chr10:101595926-101596181(+)$1	1	134	159	8.1194
((((...((((.....))))...))	chr4:74321237-74321469(+)$1	1	42	67	9.5848
(.((((..((((...))))....))	chr4:155533443-155533684(-)$1	1	11	36	9.0105
((.....((((.....)))))))))	chr10:98292733-98293011(-)$1	1	243	268	8.7797
((.....((((....))))...)))	chr1:46733162-46733444(+)$1	1	54	79	10.4897
((.....((((....))))))))))	chr17:76200902-76201159(+)$1	1	105	130	10.6988
..(((...(((....)))..)))..	chr4:74275009-74275215(+)$1	1	146	171	10.1994
((.((..(((((...)))))..)).	chr6:26217065-26217332(+)$1	1	182	207	7.7589
(((...(((((....))))))))))	chr2:118854005-118854250(+)$1	1	111	136	9.6297
((.....((((....))))..))))	chr2:21231637-21231889(-)$1	1	209	234	10.0087
((((((.((((....)))).)))..	chr12:69746924-69747141(+)$1	1	19	44	8.0339
(((.((.((((....)))))).)))	chr4:155533583-155533805(-)$1	1	114	139	8.8688
((((((.((((...))))))).)))	chr17:37009849-37010080(-)$1	1	156	181	9.8118
(((((((((((....))))))))))	chr19:18390715-18390967(-)$1	1	94	119	10.6125
(((.((.((((...)))))).))).	chr17:19481208-19481459(+)$1	1	114	139	7.9836
(((((((.(((....))).))))))	chr4:74320867-74321075(+)$1	1	9	34	9.8123
((.(((.((((.....)))).))))	chr4:74269976-74270185(+)$1	1	177	202	9.4141
.....((((......))))....))	chr5:37327592-37327848(-)$1	1	122	147	8.9898
(((((..((((......))))...)	chr14:24114009-24114245(+)$1	1	14	39	10.7554
(.((..(((((....)))))..)).	chr10:102710393-102710655(+)$1	1	137	162	8.6729

#PSSM
c : 0.17	g : 0.15	= : 0.10	b : 0.08	f : 0.08	$ : 0.05	d : 0.05	# : 0.05	[ : 0.05	" : 0.03	h : 0.03	G : 0.03	a : 0.01	: : 0.01	e : 0.01	! : 0.01	
c : 0.17	g : 0.15	f : 0.10	= : 0.08	! : 0.07	b : 0.05	$ : 0.05	[ : 0.05	d : 0.05	# : 0.05	" : 0.03	G : 0.03	: : 0.01	h : 0.01	a : 0.01	e : 0.01	
c : 0.17	[ : 0.12	$ : 0.10	g : 0.10	= : 0.08	! : 0.08	f : 0.07	i : 0.05	" : 0.03	b : 0.03	# : 0.03	G : 0.03	d : 0.03	e : 0.01	
c : 0.28	$ : 0.10	b : 0.10	[ : 0.08	g : 0.08	= : 0.07	f : 0.07	i : 0.05	! : 0.03	# : 0.03	a : 0.01	e : 0.01	d : 0.01	" : 0.01	
c : 0.31	g : 0.12	b : 0.12	$ : 0.10	= : 0.07	i : 0.05	" : 0.05	a : 0.03	! : 0.03	f : 0.03	# : 0.01	e : 0.01	d : 0.01	
c : 0.24	g : 0.12	! : 0.12	= : 0.07	[ : 0.07	" : 0.07	$ : 0.07	i : 0.05	d : 0.05	b : 0.05	f : 0.03	# : 0.01	e : 0.01	
[ : 0.24	! : 0.14	e : 0.12	g : 0.08	= : 0.07	" : 0.07	$ : 0.07	i : 0.05	c : 0.05	d : 0.03	a : 0.01	# : 0.01	f : 0.01	
d : 0.43	e : 0.14	[ : 0.12	! : 0.07	i : 0.05	c : 0.05	= : 0.05	g : 0.03	" : 0.03	
d : 0.45	c : 0.21	e : 0.14	i : 0.05	= : 0.05	g : 0.03	! : 0.01	a : 0.01	" : 0.01	
d : 0.42	c : 0.22	e : 0.12	i : 0.05	= : 0.05	o : 0.05	g : 0.03	b : 0.03	
d : 0.42	c : 0.17	e : 0.12	o : 0.10	i : 0.05	g : 0.03	= : 0.03	b : 0.03	n : 0.01	
m : 0.57	o : 0.19	n : 0.10	l : 0.07	c : 0.01	d : 0.01	e : 0.01	
m : 0.57	o : 0.19	l : 0.12	n : 0.10	
m : 0.57	o : 0.19	l : 0.12	n : 0.10	
m : 0.57	o : 0.19	n : 0.10	l : 0.05	d : 0.03	i : 0.01	c : 0.01	
d : 0.31	c : 0.17	o : 0.14	e : 0.12	n : 0.08	i : 0.05	g : 0.03	= : 0.03	b : 0.03	
d : 0.40	c : 0.21	e : 0.12	o : 0.08	i : 0.05	= : 0.05	g : 0.03	b : 0.03	
d : 0.45	c : 0.21	e : 0.14	i : 0.05	= : 0.05	g : 0.03	2 : 0.03	3 : 0.01	
d : 0.42	e : 0.14	c : 0.10	] : 0.08	2 : 0.07	i : 0.05	= : 0.05	g : 0.03	3 : 0.01	b : 0.01	
e : 0.14	d : 0.14	2 : 0.10	c : 0.10	g : 0.08	] : 0.08	4 : 0.08	= : 0.07	i : 0.05	a : 0.03	3 : 0.03	b : 0.03	f : 0.01	
c : 0.19	2 : 0.15	g : 0.12	4 : 0.10	] : 0.10	= : 0.07	i : 0.05	d : 0.05	3 : 0.05	b : 0.03	a : 0.01	e : 0.01	f : 0.01	
c : 0.24	g : 0.14	4 : 0.10	3 : 0.10	] : 0.08	2 : 0.08	= : 0.07	i : 0.05	b : 0.05	e : 0.01	a : 0.01	f : 0.01	
c : 0.26	g : 0.14	3 : 0.12	= : 0.10	4 : 0.10	b : 0.07	i : 0.05	] : 0.03	f : 0.03	d : 0.03	2 : 0.01	a : 0.01	
c : 0.21	g : 0.14	3 : 0.12	= : 0.10	f : 0.10	] : 0.07	b : 0.05	d : 0.05	i : 0.03	2 : 0.03	4 : 0.03	: : 0.03	
c : 0.14	f : 0.14	g : 0.14	= : 0.10	d : 0.08	3 : 0.07	: : 0.07	] : 0.05	a : 0.05	b : 0.03	2 : 0.03	h : 0.01	e : 0.01	4 : 0.01	E : 0.01	

#score	541.5587255751157
#seq	57
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_transcript_m3_run1.txt

#BEAR
eecccoooooocccbb[	chr9:140619184-140619552(+)$1	368	25	42	10.5034
eeeeeooooooeeeee>	chr16:18159880-18160121(-)$1	241	133	150	11.4981
eeeeeooooooeeeee:	chr7:44460637-44460874(-)$1	237	180	197	10.8424
c[cccooooooccc22c	chr1:44812071-44812317(-)$1	246	187	204	10.7839
c[cccoooooocccccc	chr4:151899495-151899759(-)$1	264	40	57	11.1449
eeeeeooooooeeeee6	chr2:71637403-71637655(+)$1	252	159	176	11.2384
eeeeeooooooeeeeed	chr1:207946190-207946419(+)$1	229	66	83	11.5522
gggggoooooogggggg	chr4:151458381-151458620(-)$1	239	80	97	11.6719
hhhhhoooooohhhhhh	chr8:52738256-52738507(-)$1	251	186	203	10.3035
gggggoooooogggggg	chr1:213312757-213312988(+)$1	231	27	44	11.6719
hhhhhoooooohhhhhh	chr13:113866546-113866788(+)$1	242	91	108	10.3035
[ddddoooooodddd]i	chr16:47130291-47130605(-)$1	314	26	43	10.3345
""cccoooooocccfff	chr2:169723658-169723904(-)$1	246	108	125	10.6502
eeeeeooooooeeeeed	chr14:55437783-55437995(-)$1	212	142	159	11.5522
iiiiiooooooiiiiii	chr1:85133300-85133571(-)$1	271	109	126	11.4821
hhhhhoooooohhhhhh	chr6:20592769-20593029(+)$1	260	73	90	10.3035
fffffooooooffffff	chr8:100896346-100896652(-)$1	306	54	71	10.4778
fffffooooooffffff	chr1:100837138-100837377(+)$1	239	1	18	10.4778
ee[bboooooobbeeee	chr1:92720676-92720904(-)$1	228	133	150	10.5339
fffffooooooffffff	chr12:133404032-133404265(-)$1	233	2	19	10.4778
bddddoooooodddd]b	chr1:51233670-51233897(-)$1	227	117	134	9.7065
ee[bboooooobb]eee	chr1:51390133-51390388(-)$1	255	36	53	10.4607
iiiiiooooooiiiiii	chr6:47589097-47589329(+)$1	232	209	226	11.4821
eeeeeooooooeeeee:	chr2:173976724-173976976(+)$1	252	140	157	10.8424
eeeeeooooooeeeee:	chr6:47589348-47589603(+)$1	255	10	27	10.8424
eeeeeooooooeeeee:	chr6:47527085-47527344(+)$1	259	160	177	10.8424
eeeeeooooooeeeeec	chr7:127358013-127358258(+)$1	245	6	23	11.7493
fffffooooooffffff	chrX:80502387-80502663(+)$1	276	188	205	10.4778
eeeeeooooooeeeeeg	chr14:37627183-37627486(-)$1	303	19	36	11.7792
hhhhhoooooohhhhhh	chr9:103066117-103066407(-)$1	290	269	286	10.3035
gggggoooooogggggg	chr20:36708645-36708873(+)$1	228	57	74	11.6719
fffffooooooffffff	chr18:1281734-1281966(-)$1	232	151	168	10.4778
eeeeeooooooeeeee2	chr3:14232429-14232699(+)$1	270	7	24	11.5275
gggggoooooogggggg	chr6:45259333-45259582(-)$1	249	169	186	11.6719
cccccooooooccc]cc	chr16:18796865-18797129(-)$1	264	224	241	11.0847
eeeeeooooooeeeee]	chr6:146220507-146220767(-)$1	260	117	134	11.7724
gggggoooooogggggg	chr11:58370057-58370280(+)$1	223	155	172	11.6719
c[cccooooooccc]cc	chr5:1623539-1623778(-)$1	239	6	23	11.1825
gg[bboooooobb]ggg	chr15:34777057-34777315(-)$1	258	159	176	10.5612
fffffooooooffffff	chr2:183835356-183835607(-)$1	251	23	40	10.4778
ddcccooooooccc22d	chr9:80585301-80585540(-)$1	239	125	142	10.3185
eeeeeooooooeeeee:	chr5:134619768-134619998(+)$1	230	144	161	10.8424
d[cccooooooccc22d	chr7:124544112-124544357(-)$1	245	136	153	10.4734
'ddddoooooodddd33	chr10:21993458-21993714(+)$1	256	167	184	9.4148
cc[bboooooobb]ccc	chrX:153929729-153929999(-)$1	270	171	188	10.1510
hhhhhoooooohhhhhh	chr1:8613227-8613480(-)$1	253	229	246	10.3035
cccbboooooobb]ccc	chr16:24752805-24753045(+)$1	240	106	123	10.1263
=====oooooo======	chr11:57565923-57566176(+)$1	253	7	24	11.2927
gggggoooooogggggg	chr3:157963166-157963434(+)$1	268	112	129	11.6719
ccc[aooooooa]ccc]	chr2:170474361-170474605(+)$1	244	4	21	10.7186
eeeeeooooooeeeee]	chr11:483670-483985(+)$1	315	79	96	11.7724
[ddddoooooodddd]h	chr13:99158142-99158382(-)$1	240	160	177	10.1809
eeeeeooooooeeeee3	chr6:47526581-47526792(+)$1	211	22	39	11.7222
gggggoooooogggggg	chr1:246105798-246106057(-)$1	259	226	243	11.6719

#otherMatches

#Seq PSSM
UGCAGUCAAACCUGGUG	chr9:140619184-140619552(+)$1	368	25	42	10.5034
agauugcguugaaucug	chr16:18159880-18160121(-)$1	241	133	150	11.4981
ucccaaagcucugggau	chr7:44460637-44460874(-)$1	237	180	197	10.8424
CCGCUGAAAGGAGUUUG	chr1:44812071-44812317(-)$1	246	187	204	10.7839
cucuguuucuccaggau	chr4:151899495-151899759(-)$1	264	40	57	11.1449
acuucuggccugaagug	chr2:71637403-71637655(+)$1	252	159	176	11.2384
ccuaaaaugaauuaggg	chr1:207946190-207946419(+)$1	229	66	83	11.5522
cuagguuuucuuuuagg	chr4:151458381-151458620(-)$1	239	80	97	11.6719
agcauuuucguaugcuu	chr8:52738256-52738507(-)$1	251	186	203	10.3035
cuagguuuucuuuuagg	chr1:213312757-213312988(+)$1	231	27	44	11.6719
uuuguucuucuauggau	chr13:113866546-113866788(+)$1	242	91	108	10.3035
cuuucuuuguugagaag	chr16:47130291-47130605(-)$1	314	26	43	10.3345
uggcauguuuuugcagu	chr2:169723658-169723904(-)$1	246	108	125	10.6502
gggauuuuuauauucug	chr14:55437783-55437995(-)$1	212	142	159	11.5522
uggaaaugucauucuag	chr1:85133300-85133571(-)$1	271	109	126	11.4821
gcaugugccaccaugcc	chr6:20592769-20593029(+)$1	260	73	90	10.3035
aauuauuuucuuaauuu	chr8:100896346-100896652(-)$1	306	54	71	10.4778
auguggugugucacauu	chr1:100837138-100837377(+)$1	239	1	18	10.4778
gauaguuagcucuucuu	chr1:92720676-92720904(-)$1	228	133	150	10.5339
UCUGACAUCACUCAGAU	chr12:133404032-133404265(-)$1	233	2	19	10.4778
guagauuuuucucuguc	chr1:51233670-51233897(-)$1	227	117	134	9.7065
aauacuaugcuguuuug	chr1:51390133-51390388(-)$1	255	36	53	10.4607
gaggguuccuucuuucu	chr6:47589097-47589329(+)$1	232	209	226	11.4821
uuagguauauuccuaag	chr2:173976724-173976976(+)$1	252	140	157	10.8424
cauucuucuuugaaugu	chr6:47589348-47589603(+)$1	255	10	27	10.8424
ucccaaagugcugggau	chr6:47527085-47527344(+)$1	259	160	177	10.8424
GUUCCCCUAACGGAACU	chr7:127358013-127358258(+)$1	245	6	23	11.7493
uaauggaauugcauuau	chrX:80502387-80502663(+)$1	276	188	205	10.4778
cugguuuugguaucagg	chr14:37627183-37627486(-)$1	303	19	36	11.7792
CUCUGUUAUUGUAGGGA	chr9:103066117-103066407(-)$1	290	269	286	10.3035
cuagguuuucuccuagg	chr20:36708645-36708873(+)$1	228	57	74	11.6719
aggagucccuucuccuc	chr18:1281734-1281966(-)$1	232	151	168	10.4778
ucuuauuauuuugagau	chr3:14232429-14232699(+)$1	270	7	24	11.5275
ucaguuuuauugcugag	chr6:45259333-45259582(-)$1	249	169	186	11.6719
GCCUGUGAUUUUAGAGC	chr16:18796865-18797129(-)$1	264	224	241	11.0847
uaaggguccaguuuuau	chr6:146220507-146220767(-)$1	260	117	134	11.7724
aauacauuuugguauug	chr11:58370057-58370280(+)$1	223	155	172	11.6719
uguucuagauugagggu	chr5:1623539-1623778(-)$1	239	6	23	11.1825
cuugguuuagucuuggg	chr15:34777057-34777315(-)$1	258	159	176	10.5612
aauauaauaucauauuu	chr2:183835356-183835607(-)$1	251	23	40	10.4778
AGAGGACUGCCCCUGCC	chr9:80585301-80585540(-)$1	239	125	142	10.3185
auguggugaaucacauu	chr5:134619768-134619998(+)$1	230	144	161	10.8424
cauaaaauaaguuaggg	chr7:124544112-124544357(-)$1	245	136	153	10.4734
uugaauuugcuuucaua	chr10:21993458-21993714(+)$1	256	167	184	9.4148
gggaguacugucugccc	chrX:153929729-153929999(-)$1	270	171	188	10.1510
CACUGGCCUAGUGGUGU	chr1:8613227-8613480(-)$1	253	229	246	10.3035
gguucucuuuugguacc	chr16:24752805-24753045(+)$1	240	106	123	10.1263
UUAAUCCCAAAGUUAAA	chr11:57565923-57566176(+)$1	253	7	24	11.2927
uucuguuguuucagggu	chr3:157963166-157963434(+)$1	268	112	129	11.6719
gccugauugcccuggcc	chr2:170474361-170474605(+)$1	244	4	21	10.7186
agagguacuguccuuua	chr11:483670-483985(+)$1	315	79	96	11.7724
CUCUUCAUGAAAAGAUU	chr13:99158142-99158382(-)$1	240	160	177	10.1809
uuguuguuuggaauagu	chr6:47526581-47526792(+)$1	211	22	39	11.7222
cccauuauuguguggga	chr1:246105798-246106057(-)$1	259	226	243	11.6719

#DB
))(((......)))((.	chr9:140619184-140619552(+)$1	1	25	42	10.5034
(((((......))))).	chr16:18159880-18160121(-)$1	1	133	150	11.4981
(((((......))))).	chr7:44460637-44460874(-)$1	1	180	197	10.8424
(.(((......)))..)	chr1:44812071-44812317(-)$1	1	187	204	10.7839
(.(((......))))))	chr4:151899495-151899759(-)$1	1	40	57	11.1449
(((((......))))).	chr2:71637403-71637655(+)$1	1	159	176	11.2384
(((((......)))))(	chr1:207946190-207946419(+)$1	1	66	83	11.5522
(((((......))))))	chr4:151458381-151458620(-)$1	1	80	97	11.6719
(((((......))))))	chr8:52738256-52738507(-)$1	1	186	203	10.3035
(((((......))))))	chr1:213312757-213312988(+)$1	1	27	44	11.6719
(((((......))))))	chr13:113866546-113866788(+)$1	1	91	108	10.3035
.((((......)))).)	chr16:47130291-47130605(-)$1	1	26	43	10.3345
..(((......))))))	chr2:169723658-169723904(-)$1	1	108	125	10.6502
(((((......))))))	chr14:55437783-55437995(-)$1	1	142	159	11.5522
(((((......))))))	chr1:85133300-85133571(-)$1	1	109	126	11.4821
(((((......))))))	chr6:20592769-20593029(+)$1	1	73	90	10.3035
(((((......))))))	chr8:100896346-100896652(-)$1	1	54	71	10.4778
(((((......))))))	chr1:100837138-100837377(+)$1	1	1	18	10.4778
((.((......))))))	chr1:92720676-92720904(-)$1	1	133	150	10.5339
(((((......))))))	chr12:133404032-133404265(-)$1	1	2	19	10.4778
(((((......)))).)	chr1:51233670-51233897(-)$1	1	117	134	9.7065
((.((......)).)))	chr1:51390133-51390388(-)$1	1	36	53	10.4607
(((((......))))))	chr6:47589097-47589329(+)$1	1	209	226	11.4821
(((((......))))).	chr2:173976724-173976976(+)$1	1	140	157	10.8424
(((((......))))).	chr6:47589348-47589603(+)$1	1	10	27	10.8424
(((((......))))).	chr6:47527085-47527344(+)$1	1	160	177	10.8424
(((((......))))))	chr7:127358013-127358258(+)$1	1	6	23	11.7493
(((((......))))))	chrX:80502387-80502663(+)$1	1	188	205	10.4778
(((((......)))))(	chr14:37627183-37627486(-)$1	1	19	36	11.7792
(((((......))))))	chr9:103066117-103066407(-)$1	1	269	286	10.3035
(((((......))))))	chr20:36708645-36708873(+)$1	1	57	74	11.6719
(((((......))))))	chr18:1281734-1281966(-)$1	1	151	168	10.4778
(((((......))))).	chr3:14232429-14232699(+)$1	1	7	24	11.5275
(((((......))))))	chr6:45259333-45259582(-)$1	1	169	186	11.6719
(((((......))).))	chr16:18796865-18797129(-)$1	1	224	241	11.0847
(((((......))))).	chr6:146220507-146220767(-)$1	1	117	134	11.7724
(((((......))))))	chr11:58370057-58370280(+)$1	1	155	172	11.6719
(.(((......))).))	chr5:1623539-1623778(-)$1	1	6	23	11.1825
((.((......)).)))	chr15:34777057-34777315(-)$1	1	159	176	10.5612
(((((......))))))	chr2:183835356-183835607(-)$1	1	23	40	10.4778
(((((......)))..)	chr9:80585301-80585540(-)$1	1	125	142	10.3185
(((((......))))).	chr5:134619768-134619998(+)$1	1	144	161	10.8424
(.(((......)))..)	chr7:124544112-124544357(-)$1	1	136	153	10.4734
.((((......))))..	chr10:21993458-21993714(+)$1	1	167	184	9.4148
((.((......)).)))	chrX:153929729-153929999(-)$1	1	171	188	10.1510
(((((......))))))	chr1:8613227-8613480(-)$1	1	229	246	10.3035
(((((......)).)))	chr16:24752805-24753045(+)$1	1	106	123	10.1263
(((((......))))))	chr11:57565923-57566176(+)$1	1	7	24	11.2927
(((((......))))))	chr3:157963166-157963434(+)$1	1	112	129	11.6719
(((.(......).))).	chr2:170474361-170474605(+)$1	1	4	21	10.7186
(((((......))))).	chr11:483670-483985(+)$1	1	79	96	11.7724
.((((......)))).)	chr13:99158142-99158382(-)$1	1	160	177	10.1809
(((((......))))).	chr6:47526581-47526792(+)$1	1	22	39	11.7222
(((((......))))))	chr1:246105798-246106057(-)$1	1	226	243	11.6719

#PSSM
e : 0.33	g : 0.14	c : 0.12	f : 0.11	h : 0.09	[ : 0.03	i : 0.03	d : 0.03	" : 0.01	b : 0.01	' : 0.01	= : 0.01	
e : 0.33	g : 0.14	f : 0.11	h : 0.09	d : 0.09	[ : 0.07	c : 0.07	i : 0.03	" : 0.01	= : 0.01	
e : 0.27	c : 0.18	g : 0.12	f : 0.11	h : 0.09	d : 0.07	[ : 0.07	i : 0.03	= : 0.01	
e : 0.27	c : 0.14	g : 0.12	f : 0.11	h : 0.09	b : 0.09	d : 0.07	i : 0.03	= : 0.01	[ : 0.01	
e : 0.27	c : 0.14	g : 0.12	f : 0.11	h : 0.09	b : 0.09	d : 0.07	i : 0.03	= : 0.01	a : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
e : 0.27	c : 0.14	g : 0.12	f : 0.11	h : 0.09	b : 0.09	d : 0.07	i : 0.03	= : 0.01	a : 0.01	
e : 0.27	c : 0.14	g : 0.12	f : 0.11	h : 0.09	b : 0.09	d : 0.07	i : 0.03	= : 0.01	] : 0.01	
e : 0.29	c : 0.16	g : 0.12	f : 0.11	h : 0.09	d : 0.07	] : 0.07	i : 0.03	= : 0.01	
e : 0.31	g : 0.14	f : 0.12	h : 0.09	c : 0.07	d : 0.07	2 : 0.05	i : 0.03	] : 0.03	b : 0.01	= : 0.01	
e : 0.31	g : 0.14	f : 0.12	c : 0.11	h : 0.09	2 : 0.05	] : 0.05	i : 0.03	b : 0.01	3 : 0.01	= : 0.01	
g : 0.16	c : 0.12	f : 0.12	h : 0.11	: : 0.09	d : 0.07	i : 0.05	] : 0.05	e : 0.03	3 : 0.03	[ : 0.01	> : 0.01	6 : 0.01	b : 0.01	2 : 0.01	= : 0.01	

#score	589.0527845647089
#seq	54
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF553APP_KHSRP_CDS_m3_run2.txt

#BEAR
!!eeeeeooooooeeeee	chr3:33438218-33438479(-)$1	261	198	216	12.7561
iiiiiiiooooooiiiii	chr2:160253480-160253821(-)$1	341	195	213	9.3116
!!eeeeeooooooeeeee	chr7:157023912-157024251(+)$1	339	193	211	12.7561
f[eeeeeooooooeeeee	chr1:201828017-201828298(+)$1	281	142	160	12.3894
dd[ddddoooooodddd]	chr4:140640574-140640855(+)$1	281	82	100	9.5197
:ffffffoooooofffff	chr12:49666901-49667204(+)$1	303	238	256	8.7437
eeeeerrrrrrrrreeee	chr12:107364958-107365210(+)$1	252	35	53	7.2142
gggggggooooooggggg	chr10:75984192-75984531(+)$1	339	70	88	9.7441
e[eeeeeooooooeeeee	chr12:69663164-69663392(+)$1	228	148	166	12.5404
%%eeeeennnnneeeee3	chr13:96251562-96251942(-)$1	380	32	50	7.8845
hheeeeeooooooeeeee	chr1:1326841-1327062(-)$1	221	191	209	11.8366
"ffffffoooooofffff	chr13:20277186-20277455(-)$1	269	94	112	9.5587
eeeeeeeeeellleeeee	chr17:62518668-62518929(+)$1	261	109	127	7.3756
##eeeeennnnneeeee4	chr8:99718502-99718815(-)$1	313	137	155	8.8842
eeeeeeeooooooeeeee	chr12:27089297-27089633(-)$1	336	157	175	12.2625
eeeee[aooooooa]eee	chr12:54676758-54676992(+)$1	234	194	212	11.0295
e[eeeeeooooooeeeee	chr9:111681066-111681331(-)$1	265	31	49	12.5404
cc[eeeeennnnneeeee	chr1:204501766-204502064(+)$1	298	106	124	8.2906
dddddddoooooodddd:	chr3:169888898-169889231(-)$1	333	301	319	8.2337
::eeeeeooooooeeeee	chr2:97297103-97297386(-)$1	283	173	191	10.8926
gggggggooooooggggg	chr14:58734041-58734338(-)$1	297	215	233	9.7441
hffffffoooooofffff	chr11:28143523-28143798(+)$1	275	25	43	9.1345
%ffffffoooooofffff	chr3:183479934-183480207(+)$1	273	233	251	9.0114
"""ddddoooooodddd2	chr17:65358885-65359192(-)$1	307	270	288	9.7772
C:eeeeeooooooeeeee	chr11:14535769-14536078(-)$1	309	54	72	10.6392
gggggggooooooggggg	chr6:76344604-76344918(+)$1	314	67	85	9.7441
e[eeeeennnnneeeeee	chr2:181851949-181852217(+)$1	268	76	94	8.9983
D:eeeeeooooooeeeee	chr7:148514170-148514435(-)$1	265	234	252	10.6110
""eeeeellleeeeeeee	chr4:95376455-95376733(+)$1	278	187	205	8.1233
d[eeeeellleeeee]dd	chr5:115238576-115238984(+)$1	408	234	252	6.9548
::eeeeeooooooeeeee	chrX:122757334-122757630(-)$1	296	60	78	10.8926
ee[ddddoooooodddd5	chr2:186664438-186664724(-)$1	286	124	142	8.8374
""eeeeeooooooeeeee	chr14:50298512-50298878(-)$1	366	36	54	12.6634
eeeecccooooooccc22	chr13:53261864-53262155(+)$1	291	128	146	9.2501
eeeeeeeennnnneeeee	chr12:11174412-11174679(-)$1	267	118	136	8.4686
iieeeeeooooooeeeee	chr12:112525214-112525613(-)$1	399	285	303	12.3351
ggggg[aooooooa]ggg	chr2:165584596-165584882(-)$1	286	104	122	9.5713
::eeeeeooooooeeeee	chr17:62510448-62510709(+)$1	261	176	194	10.8926
b[eeeeennnnneeeee]	chr14:75290772-75291076(+)$1	304	122	140	8.8178
!!eeeeennnnneeeee2	chr13:20593657-20593960(+)$1	303	129	147	8.9658
b!!ddddoooooodddd2	chr17:25634688-25634946(+)$1	258	160	178	9.7336
gggggggooooooggggg	chr2:159389847-159390115(+)$1	268	182	200	9.7441
$ffffffoooooofffff	chr11:637262-637572(+)$1	310	198	216	9.3790
::eeeeeooooooeeeee	chr1:1326801-1327041(-)$1	240	170	188	10.8926
b!!ddddoooooodddd2	chr17:25634665-25634888(+)$1	223	183	201	9.7336
!ffffffoooooofffff	chr1:78413064-78413335(-)$1	271	117	135	9.5823
bb[ddddoooooodddd]	chr2:228416515-228416780(+)$1	265	46	64	9.4575
fffff[aooooooa]fff	chr11:85689018-85689346(-)$1	328	135	153	9.1227
eeeeerrrrrrrrreeee	chr3:179092840-179093117(+)$1	277	220	238	7.2142

#otherMatches

#Seq PSSM
AAGACGACUGGGUUUGUU	chr3:33438218-33438479(-)$1	261	198	216	12.7561
AACUCUUUCUACCAGGAG	chr2:160253480-160253821(-)$1	341	195	213	9.3116
CCAUAAAAUACUGUUUGU	chr7:157023912-157024251(+)$1	339	193	211	12.7561
UAAAccuguugugggguu	chr1:201828017-201828298(+)$1	281	142	160	12.3894
GCUGCUUGGAGCAAAGCU	chr4:140640574-140640855(+)$1	281	82	100	9.5197
GAUCCAGUUAAAGUUGGA	chr12:49666901-49667204(+)$1	303	238	256	8.7437
GGAUUGGUGGAAAGAGUC	chr12:107364958-107365210(+)$1	252	35	53	7.2142
AUGAAGAGUGUAAUUUUC	chr10:75984192-75984531(+)$1	339	70	88	9.7441
CCAAGACAAAACAGUCUU	chr12:69663164-69663392(+)$1	228	148	166	12.5404
AACUAUAAUUUCUGUAGA	chr13:96251562-96251942(-)$1	380	32	50	7.8845
ACGAUGCUCCCACGCGUC	chr1:1326841-1327062(-)$1	221	191	209	11.8366
GUCAAGGGGGCAACUUUG	chr13:20277186-20277455(-)$1	269	94	112	9.5587
UUAGAAUUGCAUCGUAAU	chr17:62518668-62518929(+)$1	261	109	127	7.3756
UUGCUGAAAAUGUUAGCC	chr8:99718502-99718815(-)$1	313	137	155	8.8842
GGAUGUACUUAACUGCAU	chr12:27089297-27089633(-)$1	336	157	175	12.2625
AUGGCGGGAGUGGCAGCU	chr12:54676758-54676992(+)$1	234	194	212	11.0295
GGCUAUGUAAAACCAUGG	chr9:111681066-111681331(-)$1	265	31	49	12.5404
uuucaugucauuuacgug	chr1:204501766-204502064(+)$1	298	106	124	8.2906
GCACUGAUCAUGUUCAGA	chr3:169888898-169889231(-)$1	333	301	319	8.2337
AGACGUCCCAAUAGAUGU	chr2:97297103-97297386(-)$1	283	173	191	10.8926
UUUUAUACUCAGAUAUAA	chr14:58734041-58734338(-)$1	297	215	233	9.7441
GUUGAAUUCUUAUAUUUG	chr11:28143523-28143798(+)$1	275	25	43	9.1345
UCCCAUAAGAACCUGUGG	chr3:183479934-183480207(+)$1	273	233	251	9.0114
ugagagucagagagcuug	chr17:65358885-65359192(-)$1	307	270	288	9.7772
CAGGAGUGUUUGGAUUCC	chr11:14535769-14536078(-)$1	309	54	72	10.6392
AUGAAAUUAUACUAUUUU	chr6:76344604-76344918(+)$1	314	67	85	9.7441
AUGUGUUAUUAAGACAUU	chr2:181851949-181852217(+)$1	268	76	94	8.9983
CUAAAAAUAAUUUUUUUU	chr7:148514170-148514435(-)$1	265	234	252	10.6110
CUGGGAUUUGAUCUUGGC	chr4:95376455-95376733(+)$1	278	187	205	8.1233
CAGUUUUUAAAAAAUGGA	chr5:115238576-115238984(+)$1	408	234	252	6.9548
UGUUUUACAGUGUUGAAG	chrX:122757334-122757630(-)$1	296	60	78	10.8926
CUCUACCCUUUUUGGUGC	chr2:186664438-186664724(-)$1	286	124	142	8.8374
AUGAGGAAUUUCAUCCUU	chr14:50298512-50298878(-)$1	366	36	54	12.6634
UAUUGUGUAUAUUCACCU	chr13:53261864-53262155(+)$1	291	128	146	9.2501
AAACAUCUCAAGAAGAUG	chr12:11174412-11174679(-)$1	267	118	136	8.4686
AGUUGAACUAUUAUUCAA	chr12:112525214-112525613(-)$1	399	285	303	12.3351
UUCUAGACAUUAUUGUAG	chr2:165584596-165584882(-)$1	286	104	122	9.5713
UGUUCCAGCUGGUUGGAA	chr17:62510448-62510709(+)$1	261	176	194	10.8926
AAACGUGAUAUGCAUGUA	chr14:75290772-75291076(+)$1	304	122	140	8.8178
GCCUUAACAUUUUUGAGC	chr13:20593657-20593960(+)$1	303	129	147	8.9658
GAAAGAGUGGCAUCUCUG	chr17:25634688-25634946(+)$1	258	160	178	9.7336
UACUUGUGCGUCUGCAAG	chr2:159389847-159390115(+)$1	268	182	200	9.7441
UCGCUCGUGUGCGUGAGC	chr11:637262-637572(+)$1	310	198	216	9.3790
ACGAUGCUCCCACGCGUC	chr1:1326801-1327041(-)$1	240	170	188	10.8926
GAAAGAGUGGCAUCUCUG	chr17:25634665-25634888(+)$1	223	183	201	9.7336
GUAUAGAACUAGCUCUGU	chr1:78413064-78413335(-)$1	271	117	135	9.5823
AAUGUACAUCUUAGUAUU	chr2:228416515-228416780(+)$1	265	46	64	9.4575
UAUUUUCUGUUGUGUAAG	chr11:85689018-85689346(-)$1	328	135	153	9.1227
AGCUAAACAGAUACUAGC	chr3:179092840-179093117(+)$1	277	220	238	7.2142

#DB
..(((((......)))))	chr3:33438218-33438479(-)$1	1	198	216	12.7561
(((((((......)))))	chr2:160253480-160253821(-)$1	1	195	213	9.3116
..(((((......)))))	chr7:157023912-157024251(+)$1	1	193	211	12.7561
(.(((((......)))))	chr1:201828017-201828298(+)$1	1	142	160	12.3894
((.((((......)))).	chr4:140640574-140640855(+)$1	1	82	100	9.5197
.((((((......)))))	chr12:49666901-49667204(+)$1	1	238	256	8.7437
(((((.........))))	chr12:107364958-107365210(+)$1	1	35	53	7.2142
(((((((......)))))	chr10:75984192-75984531(+)$1	1	70	88	9.7441
(.(((((......)))))	chr12:69663164-69663392(+)$1	1	148	166	12.5404
..(((((.....))))).	chr13:96251562-96251942(-)$1	1	32	50	7.8845
))(((((......)))))	chr1:1326841-1327062(-)$1	1	191	209	11.8366
.((((((......)))))	chr13:20277186-20277455(-)$1	1	94	112	9.5587
)))))(((((...)))))	chr17:62518668-62518929(+)$1	1	109	127	7.3756
..(((((.....))))).	chr8:99718502-99718815(-)$1	1	137	155	8.8842
))(((((......)))))	chr12:27089297-27089633(-)$1	1	157	175	12.2625
(((((.(......).)))	chr12:54676758-54676992(+)$1	1	194	212	11.0295
(.(((((......)))))	chr9:111681066-111681331(-)$1	1	31	49	12.5404
((.(((((.....)))))	chr1:204501766-204502064(+)$1	1	106	124	8.2906
)))((((......)))).	chr3:169888898-169889231(-)$1	1	301	319	8.2337
..(((((......)))))	chr2:97297103-97297386(-)$1	1	173	191	10.8926
(((((((......)))))	chr14:58734041-58734338(-)$1	1	215	233	9.7441
(((((((......)))))	chr11:28143523-28143798(+)$1	1	25	43	9.1345
.((((((......)))))	chr3:183479934-183480207(+)$1	1	233	251	9.0114
...((((......)))).	chr17:65358885-65359192(-)$1	1	270	288	9.7772
(.(((((......)))))	chr11:14535769-14536078(-)$1	1	54	72	10.6392
(((((((......)))))	chr6:76344604-76344918(+)$1	1	67	85	9.7441
(.(((((.....))))))	chr2:181851949-181852217(+)$1	1	76	94	8.9983
).(((((......)))))	chr7:148514170-148514435(-)$1	1	234	252	10.6110
..(((((...))))))))	chr4:95376455-95376733(+)$1	1	187	205	8.1233
(.(((((...))))).))	chr5:115238576-115238984(+)$1	1	234	252	6.9548
..(((((......)))))	chrX:122757334-122757630(-)$1	1	60	78	10.8926
((.((((......)))).	chr2:186664438-186664724(-)$1	1	124	142	8.8374
..(((((......)))))	chr14:50298512-50298878(-)$1	1	36	54	12.6634
(((((((......)))..	chr13:53261864-53262155(+)$1	1	128	146	9.2501
)))(((((.....)))))	chr12:11174412-11174679(-)$1	1	118	136	8.4686
(((((((......)))))	chr12:112525214-112525613(-)$1	1	285	303	12.3351
(((((.(......).)))	chr2:165584596-165584882(-)$1	1	104	122	9.5713
..(((((......)))))	chr17:62510448-62510709(+)$1	1	176	194	10.8926
(.(((((.....))))).	chr14:75290772-75291076(+)$1	1	122	140	8.8178
..(((((.....))))).	chr13:20593657-20593960(+)$1	1	129	147	8.9658
(..((((......)))).	chr17:25634688-25634946(+)$1	1	160	178	9.7336
(((((((......)))))	chr2:159389847-159390115(+)$1	1	182	200	9.7441
.((((((......)))))	chr11:637262-637572(+)$1	1	198	216	9.3790
..(((((......)))))	chr1:1326801-1327041(-)$1	1	170	188	10.8926
(..((((......)))).	chr17:25634665-25634888(+)$1	1	183	201	9.7336
.((((((......)))))	chr1:78413064-78413335(-)$1	1	117	135	9.5823
((.((((......)))).	chr2:228416515-228416780(+)$1	1	46	64	9.4575
(((((.(......).)))	chr11:85689018-85689346(-)$1	1	135	153	9.1227
(((((.........))))	chr3:179092840-179093117(+)$1	1	220	238	7.2142

#PSSM
e : 0.22	: : 0.10	g : 0.10	! : 0.08	" : 0.08	b : 0.08	d : 0.06	i : 0.04	f : 0.04	% : 0.04	h : 0.04	# : 0.02	c : 0.02	C : 0.02	D : 0.02	$ : 0.02	
e : 0.16	f : 0.14	[ : 0.12	: : 0.12	! : 0.10	g : 0.10	" : 0.06	i : 0.04	d : 0.04	% : 0.02	h : 0.02	# : 0.02	c : 0.02	b : 0.02	
e : 0.57	f : 0.14	g : 0.10	[ : 0.08	! : 0.04	i : 0.02	d : 0.02	" : 0.02	
e : 0.59	d : 0.14	f : 0.14	g : 0.10	i : 0.02	
e : 0.57	d : 0.14	f : 0.14	g : 0.10	i : 0.02	c : 0.02	
e : 0.51	d : 0.14	f : 0.12	g : 0.08	[ : 0.06	r : 0.04	i : 0.02	c : 0.02	
e : 0.51	d : 0.14	f : 0.12	g : 0.08	a : 0.06	r : 0.04	i : 0.02	c : 0.02	
o : 0.75	n : 0.10	e : 0.06	r : 0.04	l : 0.04	
o : 0.75	n : 0.14	r : 0.04	l : 0.04	e : 0.02	
o : 0.75	n : 0.14	r : 0.04	l : 0.04	e : 0.02	
o : 0.75	n : 0.14	r : 0.04	e : 0.04	l : 0.02	
o : 0.75	n : 0.14	r : 0.04	e : 0.04	l : 0.02	
o : 0.75	e : 0.14	r : 0.04	n : 0.04	l : 0.02	
e : 0.51	d : 0.14	f : 0.12	g : 0.08	a : 0.06	r : 0.04	i : 0.02	c : 0.02	
e : 0.55	d : 0.14	f : 0.12	g : 0.08	] : 0.06	i : 0.02	c : 0.02	
e : 0.55	d : 0.14	f : 0.14	g : 0.10	i : 0.02	] : 0.02	c : 0.02	
e : 0.55	d : 0.16	f : 0.14	g : 0.10	i : 0.02	2 : 0.02	
e : 0.46	f : 0.14	g : 0.10	2 : 0.10	] : 0.06	i : 0.02	3 : 0.02	4 : 0.02	: : 0.02	d : 0.02	5 : 0.02	

#score	482.0590405261861
#seq	49
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_transcript_m1_run1.txt

#BEAR
iiiiiccc[eeeeeooooooeeeee]ccc4444iiiiii	chr20:35484599-35484858(-)$1	259	186	225	16.0961
============[cccooooooccc88888888======	chr4:703258-703549(+)$1	291	206	245	15.4265
b[a[ggggggg[ddddmmmmdddd]ggggggg]a]bb==	chr13:113987027-113987288(-)$1	261	97	136	15.4382
=========bbeeeeellleeeee]bb]==========6	chr9:123620900-123621226(-)$1	326	210	249	18.4418
""a[==========rrrrrrrrr==========a333cc	chr6:15263137-15263411(+)$1	274	205	244	19.9777
============[cccmmmmccc]===============	chr17:79048271-79048559(+)$1	288	125	164	23.6043
[ggggggg[gggggggnnnnngggggggggggggg]fff	chr1:31406201-31406477(-)$1	276	181	220	15.4664
cc"""==========qqqqqqqq==========333ccc	chr11:496886-497149(-)$1	263	68	107	17.8589
=========!!cccrrrrrrrrrccc333==========	chr11:63911595-63911812(-)$1	217	117	156	19.5122
iiiii!!iiiiiiiiimmmmiiiiiiiii333iiiiiii	chr4:881257-881498(-)$1	241	168	207	20.8284
ffff============mmmm============]ffffff	chr6:3146754-3147026(+)$1	272	173	212	20.0329
b[bb============mmmm============4444bbb	chr22:49973811-49974064(-)$1	253	82	121	20.4380
===!!gggggggcccaooooooa]ccc4444ggggggg3	chr10:43902580-43902870(-)$1	290	54	93	17.4901
==####==========qqqqqqqq==========4444=	chr16:89980656-89980957(+)$1	301	231	270	18.1332
============[cccmmmmccc]===============	chr16:1656708-1657036(-)$1	328	73	112	23.6043
================oooooo=================	chr19:7705198-7705454(+)$1	256	171	210	24.1690
ccc[============mmmm============]ccc]bb	chr10:103590474-103590750(-)$1	276	95	134	21.1260
[eeeeegggggggcccmmmmccc]ggggggg4444eeee	chr9:132261071-132261385(+)$1	314	253	292	15.0983
ggg[============mmmm============]gggggg	chr2:220397439-220397697(+)$1	258	64	103	22.2611
===####gggggggooooooggggggg============	chr7:623111-623378(-)$1	267	147	186	19.9967
=========[a!!cccmmmmccc]a]==========EEE	chr7:1112883-1113179(-)$1	296	230	269	18.3503
================mmmm===================	chr19:3687323-3687596(-)$1	273	44	83	24.4527
======="""ffffffmmmmffffff==========]dd	chr3:128214518-128214764(+)$1	246	176	215	19.1842
==========bb[cccoooooocccbb]===========	chr18:9824326-9824662(+)$1	336	192	231	21.0165
!iiiiiiiii!!ddddmmmmddddiiiiiiiii]bb]ee	chr17:3839982-3840220(-)$1	238	73	112	18.0467
ff[=============mmmm=============333fff	chr4:881343-881558(-)$1	215	26	65	22.1351
======!!ccc!!bb####a[eeeee[============	chr1:1242921-1243185(-)$1	264	76	115	16.5489
cciiiiiiiiieeeeemmmmeeeee]iiiiiiiii22cc	chr19:576878-577122(+)$1	244	32	71	18.5802
======$$$$$eeeeennnnneeeee===========ee	chr1:47696838-47697153(-)$1	315	235	274	17.5833
iiiiiiii"""cccrrrrrrrrrccc4444iiiiiiiii	chr22:22210549-22210761(-)$1	212	81	120	17.4415
!!==============mmmm==============22ddd	chr22:49918118-49918389(-)$1	271	101	140	22.0365
iiiiiiiiia[eeeeellleeeee333a]iiiiiiiii]	chr16:1785061-1785310(+)$1	249	48	87	18.1697
==========[eeeeemmmmeeeee22============	chr17:78866924-78867222(+)$1	298	196	235	21.1868
!!iiiiiiiiiccc[bblllbb]ccc]iiiiiiiii22b	chr1:249149220-249149476(-)$1	256	141	180	16.8805
==============[aooooooa]===============	chr19:40738503-40738732(-)$1	229	71	110	23.7307
============[cccnnnnnccc22=============	chr11:2327154-2327422(+)$1	268	13	52	21.4219
===[============mmmm===================	chr1:246474769-246475077(-)$1	308	105	144	24.3954
iiiiii[a[a[eeeeennnnneeeeea]a]iiiiiiiii	chrX:48775562-48775884(-)$1	322	78	117	16.9725
ff"""===========qqqqqqqq===========333f	chr10:72507535-72507834(+)$1	299	78	117	18.0313
iiiiii"""bb[ddddmmmmdddd]bb]iiiiiiiiiff	chr3:196196770-196197054(-)$1	284	157	196	17.1746
!iiiiiiiii[a[cccmmmmccc]a]iiiiiiiii4444	chr9:132260347-132260674(+)$1	327	233	272	20.2917
c[eeeee[gggggggooooooggggggg333eeeee]cc	chr6:20424326-20424607(+)$1	281	150	189	14.5744
bb[=============mmmm=============]bbccc	chr22:23565453-23565711(+)$1	258	31	70	21.2369

#otherMatches

#Seq PSSM
CUGGGGAGUUAGCCUCAAGUGGCUGUcucugugcccagc	chr20:35484599-35484858(-)$1	259	186	225	16.0961
UGAGCUAUCUAGACUCCCAAGAGAGACACUGAAUUGGAU	chr4:703258-703549(+)$1	291	206	245	15.4265
cuguggccagcgggagccucuucugguuggccccugagu	chr13:113987027-113987288(-)$1	261	97	136	15.4382
CUAUCUUGUUCCACCAGUCUGGUGAGAGGCAAGGUGGGA	chr9:123620900-123621226(-)$1	326	210	249	18.4418
gugugugGUAGGGGUCCUCAUUUUCCUUACUGCCUGUCA	chr6:15263137-15263411(+)$1	274	205	244	19.9777
gugcgugcacggaugcgugagugccugugugcgugcacg	chr17:79048271-79048559(+)$1	288	125	164	23.6043
guguguguguaugugugugugAUGCAUGACAUGCAAAUG	chr1:31406201-31406477(-)$1	276	181	220	15.4664
ACGAGUGUCCAUGUGAGUGUGAGCACAUGGGCGAGAGUG	chr11:496886-497149(-)$1	263	68	107	17.8589
CGGGGUGCUAAGUCAGAAGUCGGGGCAAGAGCAUUCUGU	chr11:63911595-63911812(-)$1	217	117	156	19.5122
auguguacacacgcaugcaagugugugugagccacaugc	chr4:881257-881498(-)$1	241	168	207	20.8284
ugcugauuugggucggagugcugguuuggguugagugcu	chr6:3146754-3147026(+)$1	272	173	212	20.0329
gugguaugaauguguugugugauguguuuguAAUCUCCC	chr22:49973811-49974064(-)$1	253	82	121	20.4380
CGGCCCGGGGACGAGCUGACGCGCCUCUUUAGUUCUCGA	chr10:43902580-43902870(-)$1	290	54	93	17.4901
AUUugugugugcgccugugugugggggugcacauuugug	chr16:89980656-89980957(+)$1	301	231	270	18.1332
uaugcgcauauguaugucugcaucugugugugugugcgc	chr16:1656708-1657036(-)$1	328	73	112	23.6043
guaugugugugugcaucugugugugugugcaugugugca	chr19:7705198-7705454(+)$1	256	171	210	24.1690
ugugcguguguaugugugugcaugugcgcgcgagcgugc	chr10:103590474-103590750(-)$1	276	95	134	21.1260
AUGGAUGGAGGAGGGCCUGGGCUGCUCCUCUGAAAAUCC	chr9:132261071-132261385(+)$1	314	253	292	15.0983
gugugcauaugugugugcaugcauguaugugcuuacauu	chr2:220397439-220397697(+)$1	258	64	103	22.2611
ccugggagugugcaagugugugugcaugggugugcacgc	chr7:623111-623378(-)$1	267	147	186	19.9967
GGAGGGCAGUGUUGCUUGAAAGCUCUCUGCCCUUCCCUU	chr7:1112883-1113179(-)$1	296	230	269	18.3503
gcaugugugcauguaugugugugcgugugcaugugugca	chr19:3687323-3687596(-)$1	273	44	83	24.4527
GCCAGAGCUGGCUGGAGCCUUCCAGUCUCUGGUCUGUGG	chr3:128214518-128214764(+)$1	246	176	215	19.1842
AUUCUUGGAAGGAGCUCUGCCUGGCCUAUUUUGAGAAUU	chr18:9824326-9824662(+)$1	336	192	231	21.0165
GGGCAGAUAUGUAGGUGUUUGCUUGUGUUUGCCGGAUGG	chr17:3839982-3840220(-)$1	238	73	112	18.0467
AUGUAUGCgugugugcauguguaugcauguguaggagug	chr4:881343-881558(-)$1	215	26	65	22.1351
ggcgUCGCUGUCGCCUUUGUGCCCGGCGGCGGGGUGGGG	chr1:1242921-1243185(-)$1	264	76	115	16.5489
GCACGCAUAUGCACguguguauguguuguguguguuugc	chr19:576878-577122(+)$1	244	32	71	18.5802
UUGGCUUGGGUGGGCGGACAGCGCCCGGUCGGCGGCUGC	chr1:47696838-47697153(-)$1	315	235	274	17.5833
ugguccucagAUAUGUGGUGUGAAUGAAGgggggaccag	chr22:22210549-22210761(-)$1	212	81	120	17.4415
cuguguguacaugugugaaugcaugugugugcacuugug	chr22:49918118-49918389(-)$1	271	101	140	22.0365
CCAAGAGGGCUCGUGUGUCGCAUGUCUGUCCCUCUUGGG	chr16:1785061-1785310(+)$1	249	48	87	18.1697
ugcgcgcgCCAGgugugugugcgccagggugugugugug	chr17:78866924-78867222(+)$1	298	196	235	21.1868
uaggguucugagccugguggccuggcuucagaguccaug	chr1:249149220-249149476(-)$1	256	141	180	16.8805
CGCAGGCACACGUGGGUGUGUGUGCAUGUGUGUUUGUGU	chr19:40738503-40738732(-)$1	229	71	110	23.7307
AUGUGUGUGCAUGAGGGUGAGCCUAUGUGUAUGCGUGUG	chr11:2327154-2327422(+)$1	268	13	52	21.4219
gugugcgcgcgugcgcguguguguaugcgugucacgcgu	chr1:246474769-246475077(-)$1	308	105	144	24.3954
GUCAUGAGGGUCUUGGGAGGGUCAGGUGCGUGUGGCGGG	chrX:48775562-48775884(-)$1	322	78	117	16.9725
gugaauaugugugugugagugugugcaugcacgugcaug	chr10:72507535-72507834(+)$1	299	78	117	18.0313
GGGCAGUUUGGCAGAGCAUCCUCUUCCCUUGUCCUUGUG	chr3:196196770-196197054(-)$1	284	157	196	17.1746
GGGAGCAGGUUCAUGGGAGGCCAGGCAUUUGUUUUGAGA	chr9:132260347-132260674(+)$1	327	233	272	20.2917
uguguUUUAAAGGUGUGACUUUAUUUUUCCUAAACGAAU	chr6:20424326-20424607(+)$1	281	150	189	14.5744
auuuguaugugcacacuuguguguguacaugcauaucuc	chr22:23565453-23565711(+)$1	258	31	70	21.2369

#DB
((((((((.(((((......))))).)))....))))))	chr20:35484599-35484858(-)$1	1	186	225	16.0961
((((((((((((.(((......)))........))))))	chr4:703258-703549(+)$1	1	206	245	15.4265
(.(.(((((((.((((....)))).))))))).).))((	chr13:113987027-113987288(-)$1	1	97	136	15.4382
((((((((((((((((...))))).)).)))))))))).	chr9:123620900-123621226(-)$1	1	210	249	18.4418
..(.((((((((((.........)))))))))))...))	chr6:15263137-15263411(+)$1	1	205	244	19.9777
((((((((((((.(((....))).)))))))))))))))	chr17:79048271-79048559(+)$1	1	125	164	23.6043
.(((((((.(((((((.....)))))))))))))).)))	chr1:31406201-31406477(-)$1	1	181	220	15.4664
((...((((((((((........))))))))))...)))	chr11:496886-497149(-)$1	1	68	107	17.8589
(((((((((..(((.........)))...))))))))))	chr11:63911595-63911812(-)$1	1	117	156	19.5122
(((((..(((((((((....)))))))))...)))))))	chr4:881257-881498(-)$1	1	168	207	20.8284
((((((((((((((((....)))))))))))).))))))	chr6:3146754-3147026(+)$1	1	173	212	20.0329
(.((((((((((((((....))))))))))))....)))	chr22:49973811-49974064(-)$1	1	82	121	20.4380
(((..(((((((((((......).)))....))))))).	chr10:43902580-43902870(-)$1	1	54	93	17.4901
((....((((((((((........))))))))))....)	chr16:89980656-89980957(+)$1	1	231	270	18.1332
((((((((((((.(((....))).)))))))))))))))	chr16:1656708-1657036(-)$1	1	73	112	23.6043
((((((((((((((((......)))))))))))))))))	chr19:7705198-7705454(+)$1	1	171	210	24.1690
(((.((((((((((((....)))))))))))).))).))	chr10:103590474-103590750(-)$1	1	95	134	21.1260
.(((((((((((((((....))).)))))))....))))	chr9:132261071-132261385(+)$1	1	253	292	15.0983
(((.((((((((((((....)))))))))))).))))))	chr2:220397439-220397697(+)$1	1	64	103	22.2611
(((....(((((((......)))))))))))))))))))	chr7:623111-623378(-)$1	1	147	186	19.9967
(((((((((.(..(((....))).).)))))))))))))	chr7:1112883-1113179(-)$1	1	230	269	18.3503
((((((((((((((((....)))))))))))))))))))	chr19:3687323-3687596(-)$1	1	44	83	24.4527
(((((((...((((((....)))))))))))))))).))	chr3:128214518-128214764(+)$1	1	176	215	19.1842
((((((((((((.(((......))))).)))))))))))	chr18:9824326-9824662(+)$1	1	192	231	21.0165
.(((((((((..((((....))))))))))))).)).))	chr17:3839982-3840220(-)$1	1	73	112	18.0467
((.(((((((((((((....)))))))))))))...)))	chr4:881343-881558(-)$1	1	26	65	22.1351
((((((..(((..((....(.(((((.((((((((((((	chr1:1242921-1243185(-)$1	1	76	115	16.5489
((((((((((((((((....))))).)))))))))..))	chr19:576878-577122(+)$1	1	32	71	18.5802
((((((.....(((((.....))))))))))))))))))	chr1:47696838-47697153(-)$1	1	235	274	17.5833
((((((((...(((.........)))....)))))))))	chr22:22210549-22210761(-)$1	1	81	120	17.4415
..((((((((((((((....))))))))))))))..)))	chr22:49918118-49918389(-)$1	1	101	140	22.0365
((((((((((.(((((...)))))...).))))))))).	chr16:1785061-1785310(+)$1	1	48	87	18.1697
((((((((((.(((((....)))))..))))))))))))	chr17:78866924-78867222(+)$1	1	196	235	21.1868
..((((((((((((.((...)).))).)))))))))..)	chr1:249149220-249149476(-)$1	1	141	180	16.8805
((((((((((((((.(......).)))))))))))))))	chr19:40738503-40738732(-)$1	1	71	110	23.7307
((((((((((((.(((.....)))..)))))))))))))	chr11:2327154-2327422(+)$1	1	13	52	21.4219
(((.((((((((((((....)))))))))))))))))))	chr1:246474769-246475077(-)$1	1	105	144	24.3954
((((((.(.(.(((((.....)))))).).)))))))))	chrX:48775562-48775884(-)$1	1	78	117	16.9725
((...(((((((((((........)))))))))))...)	chr10:72507535-72507834(+)$1	1	78	117	18.0313
((((((...((.((((....)))).)).)))))))))((	chr3:196196770-196197054(-)$1	1	157	196	17.1746
.(((((((((.(.(((....))).).)))))))))....	chr9:132260347-132260674(+)$1	1	233	272	20.2917
(.(((((.(((((((......)))))))...))))).))	chr6:20424326-20424607(+)$1	1	150	189	14.5744
((.(((((((((((((....))))))))))))).)))))	chr22:23565453-23565711(+)$1	1	31	70	21.2369

#PSSM
= : 0.44	i : 0.13	c : 0.09	! : 0.09	b : 0.06	f : 0.06	[ : 0.04	" : 0.02	g : 0.02	
= : 0.44	i : 0.18	[ : 0.06	c : 0.06	f : 0.06	g : 0.04	! : 0.04	" : 0.02	e : 0.02	b : 0.02	
= : 0.44	i : 0.23	a : 0.04	g : 0.04	" : 0.04	e : 0.04	[ : 0.04	f : 0.02	b : 0.02	# : 0.02	c : 0.02	
= : 0.41	i : 0.23	[ : 0.11	" : 0.04	# : 0.04	e : 0.04	g : 0.02	f : 0.02	b : 0.02	! : 0.02	
= : 0.55	i : 0.23	g : 0.04	" : 0.04	# : 0.04	e : 0.04	! : 0.02	
= : 0.60	i : 0.18	g : 0.06	# : 0.04	e : 0.04	c : 0.02	! : 0.02	
= : 0.58	i : 0.13	g : 0.09	! : 0.04	c : 0.02	# : 0.02	$ : 0.02	[ : 0.02	" : 0.02	e : 0.02	
= : 0.55	i : 0.16	g : 0.11	" : 0.04	c : 0.02	! : 0.02	$ : 0.02	a : 0.02	[ : 0.02	
= : 0.55	i : 0.13	g : 0.11	[ : 0.06	" : 0.06	c : 0.02	$ : 0.02	
= : 0.48	g : 0.13	i : 0.11	b : 0.04	" : 0.04	a : 0.04	e : 0.02	! : 0.02	[ : 0.02	c : 0.02	$ : 0.02	
= : 0.44	g : 0.13	[ : 0.09	b : 0.06	i : 0.06	! : 0.04	e : 0.02	a : 0.02	f : 0.02	c : 0.02	$ : 0.02	" : 0.02	
= : 0.44	e : 0.16	g : 0.11	c : 0.06	! : 0.06	[ : 0.04	i : 0.02	f : 0.02	b : 0.02	a : 0.02	
= : 0.34	e : 0.16	[ : 0.13	g : 0.09	c : 0.09	d : 0.06	! : 0.04	i : 0.02	f : 0.02	
= : 0.34	c : 0.27	e : 0.16	d : 0.06	g : 0.06	i : 0.02	f : 0.02	b : 0.02	
= : 0.30	c : 0.20	e : 0.13	d : 0.06	r : 0.06	o : 0.04	g : 0.04	[ : 0.04	i : 0.02	f : 0.02	b : 0.02	
= : 0.27	c : 0.18	e : 0.13	o : 0.06	d : 0.06	r : 0.06	a : 0.04	g : 0.02	q : 0.02	i : 0.02	f : 0.02	# : 0.02	b : 0.02	
m : 0.48	o : 0.18	n : 0.09	r : 0.06	q : 0.06	l : 0.04	# : 0.02	b : 0.02	
m : 0.48	o : 0.18	n : 0.09	l : 0.06	r : 0.06	q : 0.06	# : 0.02	
m : 0.48	o : 0.18	n : 0.09	l : 0.06	r : 0.06	q : 0.06	# : 0.02	
m : 0.48	o : 0.18	n : 0.09	r : 0.06	q : 0.06	e : 0.04	a : 0.02	l : 0.02	
= : 0.20	o : 0.13	e : 0.11	c : 0.11	n : 0.09	d : 0.06	r : 0.06	q : 0.06	i : 0.02	g : 0.02	f : 0.02	[ : 0.02	b : 0.02	
= : 0.20	e : 0.18	c : 0.13	o : 0.11	d : 0.06	r : 0.06	g : 0.06	q : 0.06	i : 0.02	f : 0.02	b : 0.02	
= : 0.23	e : 0.18	c : 0.18	d : 0.06	r : 0.06	g : 0.06	q : 0.06	a : 0.04	i : 0.02	f : 0.02	] : 0.02	
= : 0.27	e : 0.18	] : 0.16	c : 0.13	d : 0.06	g : 0.06	q : 0.04	i : 0.02	f : 0.02	
= : 0.39	e : 0.13	c : 0.13	g : 0.09	] : 0.06	i : 0.04	a : 0.04	f : 0.02	3 : 0.02	2 : 0.02	
= : 0.39	g : 0.11	] : 0.09	c : 0.09	b : 0.06	e : 0.06	i : 0.04	2 : 0.04	8 : 0.02	f : 0.02	3 : 0.02	
= : 0.48	g : 0.11	i : 0.09	b : 0.06	c : 0.04	3 : 0.04	8 : 0.02	[ : 0.02	4 : 0.02	2 : 0.02	] : 0.02	a : 0.02	
= : 0.55	i : 0.11	g : 0.09	] : 0.09	4 : 0.04	c : 0.02	8 : 0.02	3 : 0.02	a : 0.02	
= : 0.60	i : 0.13	g : 0.06	3 : 0.04	4 : 0.04	c : 0.02	8 : 0.02	] : 0.02	a : 0.02	
= : 0.62	i : 0.13	4 : 0.06	g : 0.06	3 : 0.04	8 : 0.02	] : 0.02	
= : 0.62	i : 0.18	g : 0.06	4 : 0.04	3 : 0.04	8 : 0.02	
= : 0.62	i : 0.18	g : 0.06	4 : 0.04	8 : 0.02	3 : 0.02	e : 0.02	
= : 0.53	i : 0.20	] : 0.09	4 : 0.06	g : 0.04	8 : 0.02	e : 0.02	
= : 0.46	i : 0.20	g : 0.06	a : 0.04	3 : 0.04	4 : 0.04	] : 0.04	f : 0.02	c : 0.02	e : 0.02	
= : 0.41	i : 0.20	3 : 0.06	g : 0.06	4 : 0.06	b : 0.04	] : 0.02	f : 0.02	c : 0.02	2 : 0.02	e : 0.02	
= : 0.39	i : 0.16	3 : 0.09	b : 0.06	4 : 0.06	g : 0.04	e : 0.04	2 : 0.04	] : 0.02	f : 0.02	c : 0.02	
= : 0.34	i : 0.13	] : 0.09	f : 0.06	b : 0.04	3 : 0.04	c : 0.04	g : 0.04	4 : 0.04	2 : 0.04	e : 0.02	E : 0.02	d : 0.02	
= : 0.34	i : 0.11	c : 0.11	f : 0.09	e : 0.06	b : 0.04	g : 0.04	4 : 0.04	d : 0.04	E : 0.02	2 : 0.02	3 : 0.02	
= : 0.34	c : 0.11	f : 0.11	i : 0.09	b : 0.06	e : 0.06	d : 0.04	6 : 0.02	3 : 0.02	g : 0.02	E : 0.02	] : 0.02	4 : 0.02	

#score	834.4444270822762
#seq	43
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_transcript_m3_run2.txt

#BEAR
iccc[aqqqqqqqqaccc]ii	chr3:128968359-128968674(+)$1	315	261	282	15.2819
a[ddddqqqqqqqqdddd]a:	chr20:60962283-60962508(+)$1	225	89	110	13.8932
bbddddqqqqqqqqdddd]bb	chr22:19434805-19435095(-)$1	290	123	144	13.9026
======qqqqqqqq=======	chr15:59225508-59225775(-)$1	267	17	38	15.4375
c!!cccqqqqqqqqccc22cc	chr7:128388547-128388836(+)$1	289	217	238	15.7623
[eeeeeqqqqqqqqeeeee]a	chr2:130939734-130939976(+)$1	242	69	90	14.3615
eeecccqqqqqqqqccc333e	chr8:145734376-145734670(+)$1	294	186	207	15.7487
ffffffqqqqqqqqffffff]	chr2:96874275-96874539(-)$1	264	115	136	14.0810
ff!!bbqqqqqqqqbb22fff	chr7:22857524-22857768(-)$1	244	209	230	14.0584
ccddddqqqqqqqqdddd]cc	chr13:48807209-48807561(+)$1	352	314	335	14.7116
c!!cccqqqqqqqqccc22cc	chr16:83841479-83841807(+)$1	328	141	162	15.7623
b[ddddqqqqqqqqdddd22b	chr1:22379121-22379336(+)$1	215	39	60	14.3242
ggggggqqqqqqqqggggggg	chr17:41327707-41327955(+)$1	248	161	182	14.9741
======qqqqqqqq=======	chr13:100153620-100153908(+)$1	288	33	54	15.4375
bb[cccqqqqqqqqcccbb]d	chr10:71992918-71993127(-)$1	209	124	145	14.6199
dddcccqqqqqqqqccc]ddd	chr3:5163953-5164204(+)$1	251	87	108	14.6982
bb[cccqqqqqqqqccc]bb]	chr8:42995469-42995860(+)$1	391	50	71	14.8002
!eeeeeqqqqqqqqeeeeeee	chr6:76735926-76736149(-)$1	223	12	33	14.0761
b[ddddqqqqqqqqdddd]bb	chr20:57466677-57466955(+)$1	278	60	81	14.2676
ffffffqqqqqqqqffffffh	chr19:38865309-38865556(+)$1	247	80	101	13.9137
ii[cccqqqqqqqqccc]iii	chr5:179247812-179248052(+)$1	240	201	222	15.9294
eee!!aqqqqqqqqa]eeeee	chr1:179846377-179846603(-)$1	226	119	140	14.2897
ggggggqqqqqqqqggggggg	chr4:120221521-120221825(-)$1	304	81	102	14.9741
[a[cccqqqqqqqqccc]a]b	chr19:30433051-30433361(+)$1	310	244	265	15.7265
:eeeeeqqqqqqqqeeeeedd	chr9:38392614-38392905(+)$1	291	251	272	12.9147
d!!cccqqqqqqqqccc22dd	chr9:32552229-32552530(+)$1	301	130	151	15.2925
cc[cccqqqqqqqqccc]ccc	chr5:140700102-140700422(-)$1	320	251	272	15.6723
bb[cccqqqqqqqqccc333b	chr16:89882844-89883144(-)$1	300	52	73	15.6133
dbb[bbqqqqqqqqbb]bb]d	chr10:60145213-60145498(+)$1	285	253	274	13.1968
ggg[bbqqqqqqqqbbggggg	chr6:96969674-96969928(+)$1	254	228	249	14.6649
ggggggqqqqqqqqggggggg	chr15:42840788-42841062(-)$1	274	96	117	14.9741
b[bbbbqqqqqqqqbb]bb]b	chr3:113465804-113466062(+)$1	258	164	185	13.1706
ffffffqqqqqqqqffffff]	chr22:22020218-22020447(+)$1	229	103	124	14.0810
ee[cccqqqqqqqqccc]eee	chr7:100887219-100887468(-)$1	249	180	201	15.3940
dd[cccqqqqqqqqcccdddd	chr3:120067931-120068243(-)$1	312	56	77	14.7229
!bbcccqqqqqqqqccc]bb2	chr8:144911349-144911611(-)$1	262	172	193	14.3920
"""cccqqqqqqqqccc333b	chr16:84733517-84733814(+)$1	297	157	178	15.9242
[eeeeeqqqqqqqqeeeee]c	chr10:74114481-74114761(-)$1	280	126	147	14.3989
eee[bbqqqqqqqqbb]eeee	chr1:39338868-39339122(-)$1	254	142	163	14.0644
[eeeeeqqqqqqqqeeeee]b	chr17:39942808-39943060(-)$1	252	165	186	14.2221
eee[bbqqqqqqqqbb]eeee	chr19:16187197-16187455(+)$1	258	70	91	14.0644
!!ddddqqqqqqqqdddd]hh	chr1:63249722-63250034(+)$1	312	156	177	14.6105
!addddqqqqqqqqdddd]a2	chr2:62423330-62423591(+)$1	261	137	158	14.5635
cc!!bbqqqqqqqqbbccc]f	chr14:101193181-101193411(+)$1	230	165	186	14.6170
eee[bbqqqqqqqqbbeeeee	chr11:17304235-17304454(+)$1	219	100	121	14.0245
c[a[bbqqqqqqqqbb]accc	chr11:67168542-67168771(-)$1	229	135	156	14.4550
!!ddddqqqqqqqqdddd22c	chr9:138852845-138853126(-)$1	281	181	202	14.7231
ffffffqqqqqqqqffffffe	chr11:9406148-9406391(+)$1	243	107	128	13.9911
!!ddddqqqqqqqqdddd333	chr12:96252740-96252955(+)$1	215	73	94	15.2141
ggggggqqqqqqqqggggggg	chr11:57157967-57158176(-)$1	209	37	58	14.9741
eebb[aqqqqqqqqa]bb]ee	chr14:75179567-75179826(-)$1	259	152	173	13.3869
gggcccqqqqqqqqccc]ggg	chr1:11119740-11120050(-)$1	310	85	106	15.7394
c[ddddqqqqqqqqdddd]cc	chr6:31795420-31795732(+)$1	312	283	304	14.8970
$$$cccqqqqqqqqccc4444	chr11:114311277-114311503(+)$1	226	143	164	15.0233
bbddddqqqqqqqqdddd22b	chr13:114238940-114239213(+)$1	273	39	60	13.9592
feeeeeqqqqqqqqeeeee]f	chr5:149900367-149900667(+)$1	300	153	174	14.1677
c[ddddqqqqqqqqdddd]cc	chr3:100432385-100432653(+)$1	268	2	23	14.8970
fffcccqqqqqqqqccc4444	chr2:63815997-63816272(+)$1	275	63	84	15.4461
ccc!!aqqqqqqqqa22ccc2	chr17:46128177-46128415(+)$1	238	173	194	13.9279
ii[cccqqqqqqqqccc]iii	chr3:142838548-142838814(+)$1	266	168	189	15.9294
ffffffqqqqqqqqffffff3	chr18:12702932-12703203(+)$1	271	216	237	14.1449
ggggggqqqqqqqqggggggg	chr10:73975690-73975998(+)$1	308	215	236	14.9741
c!!cccqqqqqqqqccc22cc	chr1:245027480-245027761(-)$1	281	105	126	15.7623
f"""bbqqqqqqqqbb333ff	chr19:51305372-51305615(-)$1	243	201	222	14.6881
gggg[aqqqqqqqqa22gggg	chr11:6704337-6704587(-)$1	250	204	225	14.4165
dd[cccqqqqqqqqccc]ddd	chr12:57039628-57039866(-)$1	238	107	128	14.9319
ffffffqqqqqqqqffffff3	chr18:47902089-47902320(+)$1	231	99	120	14.1449
ffffffqqqqqqqqffffff]	chr1:118475859-118476126(+)$1	267	115	136	14.0810
======qqqqqqqq=======	chr17:61850668-61850900(-)$1	232	177	198	15.4375
ccddddqqqqqqqqdddd333	chr1:46769310-46769551(+)$1	241	207	228	14.9841

#otherMatches

#Seq PSSM
CCGGACCCCCACCCGCCGAGC	chr3:128968359-128968674(+)$1	315	261	282	15.2819
CCAGGCGCAGCCCAGCCUCGA	chr20:60962283-60962508(+)$1	225	89	110	13.8932
GCCUGCGAACAGUGGCAGCGC	chr22:19434805-19435095(-)$1	290	123	144	13.9026
GCCGCUACCGGUGCGGUGGCA	chr15:59225508-59225775(-)$1	267	17	38	15.4375
AGAGUUUUGAUUAUGACCAUG	chr7:128388547-128388836(+)$1	289	217	238	15.7623
AGCCGCUAGGGGGCGCGGCGG	chr2:130939734-130939976(+)$1	242	69	90	14.3615
GUCCAGACCCUAGCCUGUACG	chr8:145734376-145734670(+)$1	294	186	207	15.7487
CCGGGCCCAGGAGUGCCUGGU	chr2:96874275-96874539(-)$1	264	115	136	14.0810
UAAGAUGUAAAAGAGUAAUAG	chr7:22857524-22857768(-)$1	244	209	230	14.0584
CUGGCCCAGAAGGAGGCCAAG	chr13:48807209-48807561(+)$1	352	314	335	14.7116
CGGACAAACGGAAGUGUAGGU	chr16:83841479-83841807(+)$1	328	141	162	15.7623
GUCAGGUGCGUGCCCCUGUCC	chr1:22379121-22379336(+)$1	215	39	60	14.3242
UUCUGGUUUCUGAUCCAGAAA	chr17:41327707-41327955(+)$1	248	161	182	14.9741
UGUGCAGACGGCGGUGCGCAU	chr13:100153620-100153908(+)$1	288	33	54	15.4375
CGUGGCCCCUCCGCGCCCGUC	chr10:71992918-71993127(-)$1	209	124	145	14.6199
CGGGGCACCAAGGAGCCGUUG	chr3:5163953-5164204(+)$1	251	87	108	14.6982
GUGACUCAggcggcggugacg	chr8:42995469-42995860(+)$1	391	50	71	14.8002
ugggggcaugguuucccccac	chr6:76735926-76736149(-)$1	223	12	33	14.0761
ccgccgccgcagcccggccgc	chr20:57466677-57466955(+)$1	278	60	81	14.2676
GCUGCCGUAAAUCAGGCGGUC	chr19:38865309-38865556(+)$1	247	80	101	13.9137
CUGCAGCCCCGAGCCUGAGGC	chr5:179247812-179248052(+)$1	240	201	222	15.9294
agguuggucucgaacuccugg	chr1:179846377-179846603(-)$1	226	119	140	14.2897
CGGGAACUUAAGCAUUUUCGG	chr4:120221521-120221825(-)$1	304	81	102	14.9741
GGACGCGAACAGCAgcggcgg	chr19:30433051-30433361(+)$1	310	244	265	15.7265
GGGCUUUCCUCUCUGGGCCGC	chr9:38392614-38392905(+)$1	291	251	272	12.9147
GCCACCGCCUGGGAGGUUACU	chr9:32552229-32552530(+)$1	301	130	151	15.2925
CUCGGCUCUCUCCCGCUUGGC	chr5:140700102-140700422(-)$1	320	251	272	15.6723
GCAGCCAAUAGGAAGGCAGCG	chr16:89882844-89883144(-)$1	300	52	73	15.6133
AUGUAGACCCUAUCCUUCACU	chr10:60145213-60145498(+)$1	285	253	274	13.1968
CCGCGGCCCUGCAUCCCGGGU	chr6:96969674-96969928(+)$1	254	228	249	14.6649
GCCGGGGAGCGCAUCCCGGCU	chr15:42840788-42841062(-)$1	274	96	117	14.9741
CGACCGGUAACUGGCGAGUGG	chr3:113465804-113466062(+)$1	258	164	185	13.1706
CGGCUCCAUGGUCUGAGUUGU	chr22:22020218-22020447(+)$1	229	103	124	14.0810
GGUGAGGCGCUGUACUCUCCC	chr7:100887219-100887468(-)$1	249	180	201	15.3940
CCUCGGUUCAGGUUCCGGGGC	chr3:120067931-120068243(-)$1	312	56	77	14.7229
CCCCCCAUGAGCGCGGGCGGC	chr8:144911349-144911611(-)$1	262	172	193	14.3920
AGUCCCAAUGAAACGGGCAGC	chr16:84733517-84733814(+)$1	297	157	178	15.9242
AGCUGAGCGCUGUAUCAGCAU	chr10:74114481-74114761(-)$1	280	126	147	14.3989
ACUAUGGCCCAUUACAAAGUG	chr1:39338868-39339122(-)$1	254	142	163	14.0644
cgccggcucccaccccggccc	chr17:39942808-39943060(-)$1	252	165	186	14.2221
ccgcgcAGGCAAAGGCUUGGG	chr19:16187197-16187455(+)$1	258	70	91	14.0644
AGCUGGAGCAUUUGCCGGGUU	chr1:63249722-63250034(+)$1	312	156	177	14.6105
AGCUGGAGCUGCUCCCGGACA	chr2:62423330-62423591(+)$1	261	137	158	14.5635
GCCAGGAGCCGGACCCGCGCC	chr14:101193181-101193411(+)$1	230	165	186	14.6170
AACGUGUUAcgagucaguuuu	chr11:17304235-17304454(+)$1	219	100	121	14.0245
GACAGAGAACGAGAUCCGCGG	chr11:67168542-67168771(-)$1	229	135	156	14.4550
GACGGCGCCGAGUGGCUGGAG	chr9:138852845-138853126(-)$1	281	181	202	14.7231
GCUAUUCCUGGCCCAGUAGCA	chr11:9406148-9406391(+)$1	243	107	128	13.9911
CGGCAGAGAGUAGCCUGCAAC	chr12:96252740-96252955(+)$1	215	73	94	15.2141
CUUUGUGAGAGGAAGCAAAGA	chr11:57157967-57158176(-)$1	209	37	58	14.9741
CGGAGGUGGAACUUCGUCGCG	chr14:75179567-75179826(-)$1	259	152	173	13.3869
ccccgccgccAUCCGCGAGGG	chr1:11119740-11120050(-)$1	310	85	106	15.7394
GAGCCCACAGAGCAGGGCACC	chr6:31795420-31795732(+)$1	312	283	304	14.8970
CCUGUCUGAUAACUGACUCUG	chr11:114311277-114311503(+)$1	226	143	164	15.0233
GCGGGCCCGCCGCCGCCCACG	chr13:114238940-114239213(+)$1	273	39	60	13.9592
GGCCCUGACGCCCUGGGGCAC	chr5:149900367-149900667(+)$1	300	153	174	14.1677
AUCUUUUGGAGGCUAGAGUUU	chr3:100432385-100432653(+)$1	268	2	23	14.8970
CGGAGCCUUUUCUCGCUAACA	chr2:63815997-63816272(+)$1	275	63	84	15.4461
GCCAGGGUGGGGUACGGGGUU	chr17:46128177-46128415(+)$1	238	173	194	13.9279
GUCUUUCUUUGCUUAAAUACC	chr3:142838548-142838814(+)$1	266	168	189	15.9294
UUCACCCUCCUAAUGGUGAGU	chr18:12702932-12703203(+)$1	271	216	237	14.1449
CGAGGGGUCGAGGGCCCUCGG	chr10:73975690-73975998(+)$1	308	215	236	14.9741
GGAGCCGAGUUUGAGGCAGCG	chr1:245027480-245027761(-)$1	281	105	126	15.7623
GUUGACUUCAUACCGUACCUC	chr19:51305372-51305615(-)$1	243	201	222	14.6881
GUGGACGAAAUGAGGGGCUAC	chr11:6704337-6704587(-)$1	250	204	225	14.4165
CCGGACUACGCCAUGUUGGGG	chr12:57039628-57039866(-)$1	238	107	128	14.9319
GAGGCUUAAAGGAUGGCCUCG	chr18:47902089-47902320(+)$1	231	99	120	14.1449
UGCUAGUGCGGUCUUUGGCGU	chr1:118475859-118476126(+)$1	267	115	136	14.0810
AGCGGUGACUCCGAGUUGCUU	chr17:61850668-61850900(-)$1	232	177	198	15.4375
CUCUUCUCUGCCCUGAAGCCC	chr1:46769310-46769551(+)$1	241	207	228	14.9841

#DB
((((.(........)))).))	chr3:128968359-128968674(+)$1	1	261	282	15.2819
(.((((........)))).).	chr20:60962283-60962508(+)$1	1	89	110	13.8932
((((((........)))).))	chr22:19434805-19435095(-)$1	1	123	144	13.9026
((((((........)))))))	chr15:59225508-59225775(-)$1	1	17	38	15.4375
(..(((........)))..))	chr7:128388547-128388836(+)$1	1	217	238	15.7623
.(((((........))))).)	chr2:130939734-130939976(+)$1	1	69	90	14.3615
((((((........)))...)	chr8:145734376-145734670(+)$1	1	186	207	15.7487
((((((........)))))).	chr2:96874275-96874539(-)$1	1	115	136	14.0810
((..((........))..)))	chr7:22857524-22857768(-)$1	1	209	230	14.0584
((((((........)))).))	chr13:48807209-48807561(+)$1	1	314	335	14.7116
(..(((........)))..))	chr16:83841479-83841807(+)$1	1	141	162	15.7623
(.((((........))))..)	chr1:22379121-22379336(+)$1	1	39	60	14.3242
((((((........)))))))	chr17:41327707-41327955(+)$1	1	161	182	14.9741
((((((........)))))))	chr13:100153620-100153908(+)$1	1	33	54	15.4375
((.(((........))))).)	chr10:71992918-71993127(-)$1	1	124	145	14.6199
((((((........))).)))	chr3:5163953-5164204(+)$1	1	87	108	14.6982
((.(((........))).)).	chr8:42995469-42995860(+)$1	1	50	71	14.8002
.(((((........)))))))	chr6:76735926-76736149(-)$1	1	12	33	14.0761
(.((((........)))).))	chr20:57466677-57466955(+)$1	1	60	81	14.2676
((((((........)))))))	chr19:38865309-38865556(+)$1	1	80	101	13.9137
((.(((........))).)))	chr5:179247812-179248052(+)$1	1	201	222	15.9294
(((..(........).)))))	chr1:179846377-179846603(-)$1	1	119	140	14.2897
((((((........)))))))	chr4:120221521-120221825(-)$1	1	81	102	14.9741
.(.(((........))).).)	chr19:30433051-30433361(+)$1	1	244	265	15.7265
.(((((........)))))((	chr9:38392614-38392905(+)$1	1	251	272	12.9147
(..(((........)))..))	chr9:32552229-32552530(+)$1	1	130	151	15.2925
((.(((........))).)))	chr5:140700102-140700422(-)$1	1	251	272	15.6723
((.(((........)))...)	chr16:89882844-89883144(-)$1	1	52	73	15.6133
(((.((........)).)).)	chr10:60145213-60145498(+)$1	1	253	274	13.1968
(((.((........)))))))	chr6:96969674-96969928(+)$1	1	228	249	14.6649
((((((........)))))))	chr15:42840788-42841062(-)$1	1	96	117	14.9741
(.((((........)).)).)	chr3:113465804-113466062(+)$1	1	164	185	13.1706
((((((........)))))).	chr22:22020218-22020447(+)$1	1	103	124	14.0810
((.(((........))).)))	chr7:100887219-100887468(-)$1	1	180	201	15.3940
((.(((........)))))))	chr3:120067931-120068243(-)$1	1	56	77	14.7229
.(((((........))).)).	chr8:144911349-144911611(-)$1	1	172	193	14.3920
...(((........)))...)	chr16:84733517-84733814(+)$1	1	157	178	15.9242
.(((((........))))).)	chr10:74114481-74114761(-)$1	1	126	147	14.3989
(((.((........)).))))	chr1:39338868-39339122(-)$1	1	142	163	14.0644
.(((((........))))).)	chr17:39942808-39943060(-)$1	1	165	186	14.2221
(((.((........)).))))	chr19:16187197-16187455(+)$1	1	70	91	14.0644
..((((........)))).))	chr1:63249722-63250034(+)$1	1	156	177	14.6105
.(((((........)))).).	chr2:62423330-62423591(+)$1	1	137	158	14.5635
((..((........))))).)	chr14:101193181-101193411(+)$1	1	165	186	14.6170
(((.((........)))))))	chr11:17304235-17304454(+)$1	1	100	121	14.0245
(.(.((........)).))))	chr11:67168542-67168771(-)$1	1	135	156	14.4550
..((((........))))..)	chr9:138852845-138853126(-)$1	1	181	202	14.7231
((((((........))))))(	chr11:9406148-9406391(+)$1	1	107	128	13.9911
..((((........))))...	chr12:96252740-96252955(+)$1	1	73	94	15.2141
((((((........)))))))	chr11:57157967-57158176(-)$1	1	37	58	14.9741
((((.(........).)).))	chr14:75179567-75179826(-)$1	1	152	173	13.3869
((((((........))).)))	chr1:11119740-11120050(-)$1	1	85	106	15.7394
(.((((........)))).))	chr6:31795420-31795732(+)$1	1	283	304	14.8970
...(((........)))....	chr11:114311277-114311503(+)$1	1	143	164	15.0233
((((((........))))..)	chr13:114238940-114239213(+)$1	1	39	60	13.9592
((((((........))))).)	chr5:149900367-149900667(+)$1	1	153	174	14.1677
(.((((........)))).))	chr3:100432385-100432653(+)$1	1	2	23	14.8970
((((((........)))....	chr2:63815997-63816272(+)$1	1	63	84	15.4461
(((..(........)..))).	chr17:46128177-46128415(+)$1	1	173	194	13.9279
((.(((........))).)))	chr3:142838548-142838814(+)$1	1	168	189	15.9294
((((((........)))))).	chr18:12702932-12703203(+)$1	1	216	237	14.1449
((((((........)))))))	chr10:73975690-73975998(+)$1	1	215	236	14.9741
(..(((........)))..))	chr1:245027480-245027761(-)$1	1	105	126	15.7623
(...((........))...))	chr19:51305372-51305615(-)$1	1	201	222	14.6881
((((.(........)..))))	chr11:6704337-6704587(-)$1	1	204	225	14.4165
((.(((........))).)))	chr12:57039628-57039866(-)$1	1	107	128	14.9319
((((((........)))))).	chr18:47902089-47902320(+)$1	1	99	120	14.1449
((((((........)))))).	chr1:118475859-118476126(+)$1	1	115	136	14.0810
((((((........)))))))	chr17:61850668-61850900(-)$1	1	177	198	15.4375
((((((........))))...	chr1:46769310-46769551(+)$1	1	207	228	14.9841

#PSSM
c : 0.15	f : 0.15	b : 0.11	g : 0.11	e : 0.10	! : 0.08	d : 0.07	[ : 0.05	i : 0.04	= : 0.04	a : 0.01	: : 0.01	" : 0.01	$ : 0.01	
e : 0.18	f : 0.12	g : 0.11	[ : 0.10	b : 0.10	! : 0.10	c : 0.08	= : 0.04	d : 0.04	i : 0.02	a : 0.02	" : 0.02	$ : 0.01	
d : 0.20	e : 0.15	[ : 0.14	f : 0.11	g : 0.11	! : 0.08	b : 0.05	= : 0.04	c : 0.02	" : 0.02	a : 0.01	$ : 0.01	
c : 0.31	d : 0.18	f : 0.10	e : 0.08	g : 0.08	[ : 0.08	! : 0.05	= : 0.04	b : 0.02	" : 0.01	
c : 0.30	d : 0.18	b : 0.14	f : 0.10	e : 0.08	g : 0.07	[ : 0.04	= : 0.04	! : 0.02	
c : 0.30	d : 0.18	b : 0.14	f : 0.10	e : 0.08	a : 0.07	g : 0.07	= : 0.04	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.30	d : 0.18	b : 0.14	f : 0.10	e : 0.08	a : 0.07	g : 0.07	= : 0.04	
c : 0.31	d : 0.18	b : 0.14	f : 0.10	e : 0.08	g : 0.07	= : 0.04	] : 0.02	2 : 0.02	
c : 0.32	d : 0.18	e : 0.11	f : 0.10	g : 0.08	] : 0.07	= : 0.04	2 : 0.04	b : 0.01	3 : 0.01	
d : 0.20	e : 0.14	] : 0.14	f : 0.10	g : 0.10	2 : 0.07	3 : 0.05	b : 0.05	c : 0.04	= : 0.04	4 : 0.02	a : 0.01	
e : 0.15	] : 0.14	f : 0.11	g : 0.11	2 : 0.10	3 : 0.08	b : 0.07	c : 0.05	= : 0.04	d : 0.04	i : 0.02	4 : 0.02	a : 0.01	
c : 0.12	] : 0.12	f : 0.12	g : 0.11	e : 0.10	3 : 0.07	d : 0.07	b : 0.05	i : 0.04	= : 0.04	2 : 0.04	a : 0.02	4 : 0.02	h : 0.01	
c : 0.14	b : 0.12	e : 0.12	g : 0.11	d : 0.10	] : 0.05	f : 0.05	3 : 0.05	i : 0.04	= : 0.04	2 : 0.04	h : 0.02	4 : 0.02	: : 0.01	a : 0.01	

#score	1027.9108682695214
#seq	70
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_UTR_m1_run1.txt

#BEAR
DDddddwwwwwwwwwwwwwwdddd	chr11:74976953-74977215(-)$1	262	209	233	20.3994
ccc!!bbtttttttttttbb]ccc	chr20:34214157-34214415(-)$1	258	85	109	21.5114
Dddddxxxxxxxxxxxxxxxdddd	chr14:74424734-74424979(+)$1	245	159	183	17.4594
fff!!bbtttttttttttbb333f	chr16:75033359-75033588(+)$1	229	24	48	20.9238
ccc[ccctttttttttttccc]cc	chr12:57492543-57492802(-)$1	259	155	179	22.3428
e!!ddddtttttttttttdddd]e	chr10:70515903-70516152(+)$1	249	172	196	21.7642
:ddddwwwwwwwwwwwwwwdddd:	chr10:121336102-121336372(-)$1	270	45	69	20.2131
!fffffftttttttttttffffff	chr16:4927276-4927545(+)$1	269	143	167	20.2352
dddd[bbtttttttttttbbdddd	chr3:9516639-9516888(+)$1	249	160	184	21.1723
f[cccwwwwwwwwwwwwwwccc44	chr21:18940361-18940597(+)$1	236	152	176	22.3453
eeee[bbuuuuuuuuuuuubbeee	chr5:38886195-38886522(+)$1	327	175	199	21.7410
======uuuuuuuuuuuu======	chr17:66511129-66511415(+)$1	286	73	97	22.3153
ggggyyyyyyyyyyyyyyyygggg	chr12:57883875-57884129(+)$1	254	140	164	21.5836
hhhhhhhvvvvvvvvvvvvvhhhh	chr2:198284837-198285065(-)$1	228	50	74	20.5638
gggggxxxxxxxxxxxxxxxgggg	chr10:5762401-5762717(+)$1	316	83	107	18.6353
"""dddduuuuuuuuuuuudddd9	chr2:198284929-198285150(-)$1	221	73	97	22.2678
hhhhhhhuuuuuuuuuuuuhhhhh	chr6:32943918-32944191(+)$1	273	71	95	20.7292
ggggggwwwwwwwwwwwwwwgggg	chr7:26230728-26230939(-)$1	211	37	61	22.4418
cc[ddddtttttttttttdddd33	chr14:35498385-35498654(+)$1	269	213	237	22.0223
!!bbcccuuuuuuuuuuuuccc]b	chr14:24616253-24616507(-)$1	254	141	165	22.7163
cc[ddddtttttttttttdddd22	chr3:10320785-10321043(+)$1	258	192	216	21.5816
DDeeeeevvvvvvvvvvvvveeee	chr3:156869573-156869829(-)$1	256	63	87	19.6741
ggg!!bbtttttttttttbb22gg	chr17:27000282-27000538(+)$1	256	116	140	20.9764
iiiiiiwwwwwwwwwwwwwwiiii	chr10:79799833-79800069(+)$1	236	61	85	22.3940
b[cccvvvvvvvvvvvvvcccbbc	chr11:63714300-63714560(+)$1	260	150	174	21.2169
$$eeeeettttttttttteeeeef	chr11:95560839-95561094(+)$1	255	164	188	20.3893
a[ddddvvvvvvvvvvvvvdddd]	chr1:226053590-226053856(-)$1	266	116	140	22.7288
f[cccwwwwwwwwwwwwwwccc44	chr21:18940397-18940606(+)$1	209	116	140	22.3453
!cccyyyyyyyyyyyyyyyyccc2	chr17:57915602-57915855(+)$1	253	158	182	21.6240
ffffffwwwwwwwwwwwwwwffff	chr7:155573324-155573569(+)$1	245	87	111	21.1353
hhhhhayyyyyyyyyyyyyyyya]	chr14:75302564-75302821(+)$1	257	195	219	20.2635
e"""cccuuuuuuuuuuuuccc33	chr19:54972240-54972491(+)$1	251	167	191	23.1814
ccccccuuuuuuuuuuuuccc]cc	chr20:61536837-61537065(-)$1	228	117	141	22.9321
ggggggguuuuuuuuuuuuggggg	chr3:156869508-156869773(-)$1	265	123	147	22.6567
ddddyyyyyyyyyyyyyyyydddd	chr17:73236351-73236603(-)$1	252	87	111	21.2191
ggggggwwwwwwwwwwwwwwgggg	chr7:26230688-26230928(-)$1	240	26	50	22.4418
fff[cccvvvvvvvvvvvvvccc2	chr19:9529705-9529957(-)$1	252	18	42	22.3043
eeeeexxxxxxxxxxxxxxxeeee	chr8:22269333-22269559(+)$1	226	121	145	17.7374
ddd[cccwwwwwwwwwwwwwwccc	chr11:85371494-85371755(-)$1	261	16	40	21.5403
hhh[ccctttttttttttccchhh	chr5:95226590-95226859(-)$1	269	186	210	21.4092
bb[dddduuuuuuuuuuuudddd]	chr18:12986731-12987033(+)$1	302	107	131	22.5782
GGGddddvvvvvvvvvvvvvdddd	chr11:111175540-111175792(+)$1	252	25	49	20.7111
e[ddddwwwwwwwwwwwwwwdddd	chr11:77327588-77327847(-)$1	259	156	180	22.3773
:fffffftttttttttttffffff	chr21:46193483-46193716(-)$1	233	92	116	19.3025
ff[ddddtttttttttttdddd]f	chr14:39618384-39618654(-)$1	270	19	43	21.5474
ggggggwwwwwwwwwwwwwwgggg	chr14:39746029-39746286(+)$1	257	135	159	22.4418
:ddddvvvvvvvvvvvvvdddd::	chr12:57909769-57910019(+)$1	250	52	76	18.7012
!!bbcccuuuuuuuuuuuuccc]b	chr14:24616307-24616538(-)$1	231	172	196	22.7163
cc[cccwwwwwwwwwwwwwwcccc	chr20:43559245-43559494(+)$1	249	128	152	22.8288
ffffffuuuuuuuuuuuuffffff	chrX:102933362-102933681(-)$1	319	100	124	20.8942
[ccc[bbuuuuuuuuuuuubb]cc	chr1:97278472-97278745(+)$1	273	124	148	22.4475
dddddxxxxxxxxxxxxxxxdddd	chr19:50031584-50031859(+)$1	275	20	44	18.3039
a!!dddduuuuuuuuuuuudddda	chr5:64859503-64859762(+)$1	259	74	98	23.0973
##cccvvvvvvvvvvvvvccc444	chr2:209176826-209177106(+)$1	280	190	214	21.7329
eeeeyyyyyyyyyyyyyyyyeeee	chr2:198284817-198285037(-)$1	220	30	54	20.7742
hhhhhhhvvvvvvvvvvvvvhhhh	chr13:76431935-76432197(+)$1	262	229	253	20.5638
cccddddvvvvvvvvvvvvvdddd	chr19:54972491-54972729(+)$1	238	33	57	22.4317
gggggggtttttttttttgggggg	chr1:185275869-185276130(-)$1	261	40	64	21.3424
&&dddduuuuuuuuuuuudddd66	chr6:31500587-31500813(-)$1	226	112	136	20.3334

#otherMatches

#Seq PSSM
ACUGGCUCCACCCCAUCUCUGCCA	chr11:74976953-74977215(-)$1	262	209	233	20.3994
CCACUGACUUUUCCCUUUUCUUGG	chr20:34214157-34214415(-)$1	258	85	109	21.5114
UGGCCUUGUCCAUUUCCUAUGGCC	chr14:74424734-74424979(+)$1	245	159	183	17.4594
CGCCCGCCUGCCUCUUCCGCCCCG	chr16:75033359-75033588(+)$1	229	24	48	20.9238
CCAUGGUGCCUUCUUAUGACCUUG	chr12:57492543-57492802(-)$1	259	155	179	22.3428
AAGGGGCGUACAGUUCCAGCUCAU	chr10:70515903-70516152(+)$1	249	172	196	21.7642
CCACUCUUUCUUCAUAUACGGUGU	chr10:121336102-121336372(-)$1	270	45	69	20.2131
UGCAGCGCCUCUCCCACACGCUGC	chr16:4927276-4927545(+)$1	269	143	167	20.2352
AAGGAGCAACAGUUUACAGCCCUU	chr3:9516639-9516888(+)$1	249	160	184	21.1723
ucggcucacugcaagcuccgccuc	chr21:18940361-18940597(+)$1	236	152	176	22.3453
CUGUAGAUCUUUGCCUCAUUCACA	chr5:38886195-38886522(+)$1	327	175	199	21.7410
AGGGAGAACUGAAUGAAAUUCCCU	chr17:66511129-66511415(+)$1	286	73	97	22.3153
UUCCAGACACUGAGUACCCAGGAA	chr12:57883875-57884129(+)$1	254	140	164	21.5836
AUGUGGUUGAAGUCACAGAUGCCA	chr2:198284837-198285065(-)$1	228	50	74	20.5638
AUACUUAUUUUUCCUCUUUCAGUA	chr10:5762401-5762717(+)$1	316	83	107	18.6353
UUUGGCAUGCUUCUGAAUUUGCUU	chr2:198284929-198285150(-)$1	221	73	97	22.2678
GAAGAGAAUCAAACUACACUUUUU	chr6:32943918-32944191(+)$1	273	71	95	20.7292
AGAAUAAUUUUUAUAAACCCUGUU	chr7:26230728-26230939(-)$1	211	37	61	22.4418
UUCUGUUUUCACCAUCAUAACACU	chr14:35498385-35498654(+)$1	269	213	237	22.0223
UGGCCGGCCCUAACCCCUCUCGAG	chr14:24616253-24616507(-)$1	254	141	165	22.7163
UGAUUGGAACACAGAAAACCAGGA	chr3:10320785-10321043(+)$1	258	192	216	21.5816
GGAGAACUCAAUUUAACUUUGUUC	chr3:156869573-156869829(-)$1	256	63	87	19.6741
GCAGAGUGAGAAGCUGCAGCAAUG	chr17:27000282-27000538(+)$1	256	116	140	20.9764
AAGGGACUAUUAAUGAAAUCUUUC	chr10:79799833-79800069(+)$1	236	61	85	22.3940
UGUUCAAGAAAUAUGAUAGAAACG	chr11:63714300-63714560(+)$1	260	150	174	21.2169
AUGAAGCAACACAGUAAAGCUUUG	chr11:95560839-95561094(+)$1	255	164	188	20.3893
UGGGUAGGAAACCUGAGCAUACCG	chr1:226053590-226053856(-)$1	266	116	140	22.7288
ucggcucacugcaagcuccgccuc	chr21:18940397-18940606(+)$1	209	116	140	22.3453
AAGACUUUAAUCCGGUUUCUUCUC	chr17:57915602-57915855(+)$1	253	158	182	21.6240
CAGCCUUGAGAACUCCACGUGGGC	chr7:155573324-155573569(+)$1	245	87	111	21.1353
ACAGACUAUCUCUAUCAUCAUUGC	chr14:75302564-75302821(+)$1	257	195	219	20.2635
UUUUCUCUCUCUCUCUUUCGAGCU	chr19:54972240-54972491(+)$1	251	167	191	23.1814
GGUAAGUAUUCGUAUUCUCUUCAU	chr20:61536837-61537065(-)$1	228	117	141	22.9321
AUUGGCUACCCUGCUCUCCAGCCA	chr3:156869508-156869773(-)$1	265	123	147	22.6567
CCUGUUUUCUUCUCUAUUGUCAGG	chr17:73236351-73236603(-)$1	252	87	111	21.2191
AGAAUAAUUUUUAUAAACCCUGUU	chr7:26230688-26230928(-)$1	240	26	50	22.4418
CAGAAGUAGAAAGGGUGGUGGCUG	chr19:9529705-9529957(-)$1	252	18	42	22.3043
CCACCUUCCUCCCGCUAAAUGGUG	chr8:22269333-22269559(+)$1	226	121	145	17.7374
CACCUCUGAUAUAAUCCAACAAGA	chr11:85371494-85371755(-)$1	261	16	40	21.5403
GAAACUAAAUAUUUGAAAUAGUUC	chr5:95226590-95226859(-)$1	269	186	210	21.4092
guuccugucuucauuguuuCAGGU	chr18:12986731-12987033(+)$1	302	107	131	22.5782
GAAACAUAGUCCUCAUCAAAAUGU	chr11:111175540-111175792(+)$1	252	25	49	20.7111
GUGAAGUUAAUGAAAGUCUUUUUC	chr11:77327588-77327847(-)$1	259	156	180	22.3773
UGGCUGCCUCUGACCCUUGCAGUC	chr21:46193483-46193716(-)$1	233	92	116	19.3025
CAUAAGCAGUUAUCUCCAGCUUUU	chr14:39618384-39618654(-)$1	270	19	43	21.5474
AGACCAGAUUCUAAUCUUUAUGGU	chr14:39746029-39746286(+)$1	257	135	159	22.4418
CACUUCCCUAAUUUCCCUAAGUAG	chr12:57909769-57910019(+)$1	250	52	76	18.7012
UGGCCGGCCCUAACCCCUCUCGAG	chr14:24616307-24616538(-)$1	231	172	196	22.7163
GCCUGCCCGCAACUCCCACCGCAG	chr20:43559245-43559494(+)$1	249	128	152	22.8288
AGAUGAUUUCACAAAAGUUCAUCU	chrX:102933362-102933681(-)$1	319	100	124	20.8942
AGAAGAGGAUCUACGAACACUGUU	chr1:97278472-97278745(+)$1	273	124	148	22.4475
UGCAGCCAACUUCCAACUCCCUGU	chr19:50031584-50031859(+)$1	275	20	44	18.3039
CUAACAUUUUCCUAUUCUUAUGUG	chr5:64859503-64859762(+)$1	259	74	98	23.0973
AAGGUAAUUUUAUAAAaagcugua	chr2:209176826-209177106(+)$1	280	190	214	21.7329
GAAGUCACAGAUGCCAUAUUCUUC	chr2:198284817-198285037(-)$1	220	30	54	20.7742
CUUUUUUGCUUUUUUUUUAAAAAA	chr13:76431935-76432197(+)$1	262	229	253	20.5638
CGGGGGCACCCAGCAAGCCCGCCC	chr19:54972491-54972729(+)$1	238	33	57	22.4317
AUGAAGGAUUCCCUUUCACUUUUA	chr1:185275869-185276130(-)$1	261	40	64	21.3424
uccucccccccAGCCAAUGGAGAU	chr6:31500587-31500813(-)$1	226	112	136	20.3334

#DB
))((((..............))))	chr11:74976953-74977215(-)$1	1	209	233	20.3994
(((..((...........)).)))	chr20:34214157-34214415(-)$1	1	85	109	21.5114
)((((...............))))	chr14:74424734-74424979(+)$1	1	159	183	17.4594
(((..((...........))...)	chr16:75033359-75033588(+)$1	1	24	48	20.9238
(((.(((...........))).))	chr12:57492543-57492802(-)$1	1	155	179	22.3428
(..((((...........)))).)	chr10:70515903-70516152(+)$1	1	172	196	21.7642
.((((..............)))).	chr10:121336102-121336372(-)$1	1	45	69	20.2131
.((((((...........))))))	chr16:4927276-4927545(+)$1	1	143	167	20.2352
((((.((...........))))))	chr3:9516639-9516888(+)$1	1	160	184	21.1723
(.(((..............)))..	chr21:18940361-18940597(+)$1	1	152	176	22.3453
((((.((............)))))	chr5:38886195-38886522(+)$1	1	175	199	21.7410
((((((............))))))	chr17:66511129-66511415(+)$1	1	73	97	22.3153
((((................))))	chr12:57883875-57884129(+)$1	1	140	164	21.5836
(((((((.............))))	chr2:198284837-198285065(-)$1	1	50	74	20.5638
(((((...............))))	chr10:5762401-5762717(+)$1	1	83	107	18.6353
...((((............)))).	chr2:198284929-198285150(-)$1	1	73	97	22.2678
(((((((............)))))	chr6:32943918-32944191(+)$1	1	71	95	20.7292
((((((..............))))	chr7:26230728-26230939(-)$1	1	37	61	22.4418
((.((((...........))))..	chr14:35498385-35498654(+)$1	1	213	237	22.0223
..(((((............))).)	chr14:24616253-24616507(-)$1	1	141	165	22.7163
((.((((...........))))..	chr3:10320785-10321043(+)$1	1	192	216	21.5816
(((((((.............))))	chr3:156869573-156869829(-)$1	1	63	87	19.6741
(((..((...........))..))	chr17:27000282-27000538(+)$1	1	116	140	20.9764
((((((..............))))	chr10:79799833-79800069(+)$1	1	61	85	22.3940
(.(((.............))))))	chr11:63714300-63714560(+)$1	1	150	174	21.2169
..(((((...........))))))	chr11:95560839-95561094(+)$1	1	164	188	20.3893
(.((((.............)))).	chr1:226053590-226053856(-)$1	1	116	140	22.7288
(.(((..............)))..	chr21:18940397-18940606(+)$1	1	116	140	22.3453
.(((................))).	chr17:57915602-57915855(+)$1	1	158	182	21.6240
((((((..............))))	chr7:155573324-155573569(+)$1	1	87	111	21.1353
((((((................).	chr14:75302564-75302821(+)$1	1	195	219	20.2635
(...(((............)))..	chr19:54972240-54972491(+)$1	1	167	191	23.1814
((((((............))).))	chr20:61536837-61537065(-)$1	1	117	141	22.9321
(((((((............)))))	chr3:156869508-156869773(-)$1	1	123	147	22.6567
((((................))))	chr17:73236351-73236603(-)$1	1	87	111	21.2191
((((((..............))))	chr7:26230688-26230928(-)$1	1	26	50	22.4418
(((.(((.............))).	chr19:9529705-9529957(-)$1	1	18	42	22.3043
(((((...............))))	chr8:22269333-22269559(+)$1	1	121	145	17.7374
(((.(((..............)))	chr11:85371494-85371755(-)$1	1	16	40	21.5403
(((.(((...........))))))	chr5:95226590-95226859(-)$1	1	186	210	21.4092
((.((((............)))).	chr18:12986731-12987033(+)$1	1	107	131	22.5782
(((((((.............))))	chr11:111175540-111175792(+)$1	1	25	49	20.7111
(.((((..............))))	chr11:77327588-77327847(-)$1	1	156	180	22.3773
.((((((...........))))))	chr21:46193483-46193716(-)$1	1	92	116	19.3025
((.((((...........)))).)	chr14:39618384-39618654(-)$1	1	19	43	21.5474
((((((..............))))	chr14:39746029-39746286(+)$1	1	135	159	22.4418
.((((.............))))..	chr12:57909769-57910019(+)$1	1	52	76	18.7012
..(((((............))).)	chr14:24616307-24616538(-)$1	1	172	196	22.7163
((.(((..............))))	chr20:43559245-43559494(+)$1	1	128	152	22.8288
((((((............))))))	chrX:102933362-102933681(-)$1	1	100	124	20.8942
.(((.((............)).))	chr1:97278472-97278745(+)$1	1	124	148	22.4475
)((((...............))))	chr19:50031584-50031859(+)$1	1	20	44	18.3039
(..((((............)))))	chr5:64859503-64859762(+)$1	1	74	98	23.0973
..(((.............)))...	chr2:209176826-209177106(+)$1	1	190	214	21.7329
((((................))))	chr2:198284817-198285037(-)$1	1	30	54	20.7742
(((((((.............))))	chr13:76431935-76432197(+)$1	1	229	253	20.5638
(((((((.............))))	chr19:54972491-54972729(+)$1	1	33	57	22.4317
(((((((...........))))))	chr1:185275869-185276130(-)$1	1	40	64	21.3424
..((((............))))..	chr6:31500587-31500813(-)$1	1	112	136	20.3334

#PSSM
g : 0.13	c : 0.11	f : 0.11	e : 0.10	h : 0.08	! : 0.06	d : 0.06	D : 0.05	: : 0.05	b : 0.03	a : 0.03	= : 0.01	" : 0.01	i : 0.01	$ : 0.01	G : 0.01	[ : 0.01	# : 0.01	& : 0.01	
c : 0.15	g : 0.13	d : 0.11	f : 0.11	[ : 0.08	h : 0.08	! : 0.06	e : 0.05	D : 0.03	" : 0.03	= : 0.01	i : 0.01	$ : 0.01	b : 0.01	G : 0.01	# : 0.01	& : 0.01	
d : 0.18	c : 0.16	g : 0.13	f : 0.10	e : 0.08	h : 0.08	[ : 0.08	! : 0.03	" : 0.03	b : 0.03	= : 0.01	i : 0.01	G : 0.01	
d : 0.32	c : 0.13	g : 0.11	e : 0.08	[ : 0.06	f : 0.06	h : 0.06	! : 0.05	b : 0.03	= : 0.01	i : 0.01	" : 0.01	
d : 0.28	c : 0.22	g : 0.10	f : 0.06	y : 0.06	h : 0.06	! : 0.05	[ : 0.05	e : 0.05	= : 0.01	i : 0.01	
d : 0.22	c : 0.15	b : 0.10	g : 0.08	x : 0.06	f : 0.06	y : 0.06	w : 0.05	h : 0.05	v : 0.05	e : 0.03	= : 0.01	i : 0.01	a : 0.01	
w : 0.18	d : 0.15	c : 0.11	b : 0.10	y : 0.08	x : 0.06	u : 0.06	v : 0.06	h : 0.05	f : 0.03	e : 0.03	g : 0.03	
t : 0.23	u : 0.23	w : 0.20	v : 0.16	y : 0.08	x : 0.06	
t : 0.23	u : 0.23	w : 0.20	v : 0.16	y : 0.08	x : 0.06	
t : 0.23	u : 0.23	w : 0.20	v : 0.16	y : 0.08	x : 0.06	
t : 0.23	u : 0.23	w : 0.20	v : 0.16	y : 0.08	x : 0.06	
t : 0.23	u : 0.23	w : 0.20	v : 0.16	y : 0.08	x : 0.06	
t : 0.23	u : 0.23	w : 0.20	v : 0.16	y : 0.08	x : 0.06	
t : 0.23	u : 0.23	w : 0.20	v : 0.16	y : 0.08	x : 0.06	
t : 0.23	u : 0.23	w : 0.20	v : 0.16	y : 0.08	x : 0.06	
t : 0.23	u : 0.23	w : 0.20	v : 0.16	y : 0.08	x : 0.06	
t : 0.23	u : 0.23	w : 0.20	v : 0.16	y : 0.08	x : 0.06	
t : 0.23	u : 0.23	w : 0.20	v : 0.16	y : 0.08	x : 0.06	
w : 0.20	u : 0.16	v : 0.11	d : 0.10	c : 0.08	y : 0.08	b : 0.06	x : 0.06	f : 0.05	= : 0.01	e : 0.01	g : 0.01	
d : 0.18	c : 0.16	w : 0.15	b : 0.10	v : 0.10	y : 0.08	x : 0.06	f : 0.05	g : 0.03	= : 0.01	h : 0.01	e : 0.01	
d : 0.32	c : 0.22	g : 0.11	f : 0.06	e : 0.06	h : 0.05	b : 0.03	] : 0.01	3 : 0.01	= : 0.01	2 : 0.01	i : 0.01	y : 0.01	w : 0.01	
d : 0.32	c : 0.16	g : 0.11	e : 0.08	f : 0.06	h : 0.06	] : 0.05	3 : 0.01	= : 0.01	2 : 0.01	i : 0.01	b : 0.01	y : 0.01	4 : 0.01	
d : 0.22	c : 0.13	g : 0.13	e : 0.08	] : 0.06	f : 0.06	h : 0.06	3 : 0.05	4 : 0.05	= : 0.01	2 : 0.01	i : 0.01	b : 0.01	a : 0.01	: : 0.01	6 : 0.01	
d : 0.13	g : 0.13	c : 0.11	f : 0.11	e : 0.08	h : 0.06	4 : 0.05	2 : 0.05	] : 0.05	: : 0.03	3 : 0.03	b : 0.03	= : 0.01	9 : 0.01	i : 0.01	a : 0.01	6 : 0.01	

#score	1258.263600741628
#seq	59
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_UTR_m2_run1.txt

#BEAR
ffffff[bb[a[cccooooooccc]a]bb]ffffff	chr10:7791288-7791556(+)$1	268	103	139	11.6153
ffffbb[iiiiiiiiimmmmiiiiiiiiibbfffff	chr5:43291024-43291289(-)$1	265	155	191	13.5254
================mmmm================	chr6:132269607-132269834(-)$1	227	33	69	18.9425
!ccc!!a[iiiiiiiiillliiiiiiiii]a22ccc	chr12:112460460-112460705(+)$1	245	57	93	15.0971
d[ccc[bb[ccc[cccooooooccc]ccc]bb]ccc	chr17:70117292-70117544(+)$1	252	88	124	13.1088
ii$$$$$eeeee[cccmmmmccc]eeeee]iiiiii	chr17:36882530-36882801(+)$1	271	9	45	13.5554
f####ccc"""bb[ccclllccc]bbccc333ffff	chr10:95351551-95351800(-)$1	249	128	164	12.6716
ggggg[==========mmmm==========22gggg	chr11:62392232-62392474(-)$1	242	73	109	17.3372
[a===========!!annnnna22===========]	chr13:113977767-113978029(+)$1	262	98	134	16.5721
ddddggggggg!!cccmmmmccc]ggggggg333dd	chr2:135206734-135206954(+)$1	220	106	142	14.6000
iiiiiiiii[a[cccbblllbb]ccca]iiiiiiii	chr3:145787294-145787570(-)$1	276	182	218	15.0527
ccc[eeeee!!ccc[aooooooa]ccc22eeeee]c	chr2:220047689-220047938(+)$1	249	152	188	11.9099
:::=============mmmm=============FFF	chrX:108885675-108885917(-)$1	242	73	109	13.2450
ggggg####ddddcccmmmmccc]ddddggggggg7	chr15:77241857-77242128(+)$1	271	173	209	13.2196
e==========!!ddddllldddd==========:f	chrX:153664617-153664859(+)$1	242	154	190	14.7495
==========[eeeeemmmmeeeee==========6	chr14:70497258-70497518(+)$1	260	42	78	15.6113
[ggggggg!!bb!!bbmmmmbb22bb22ggggggg]	chr5:177022410-177022665(+)$1	255	40	76	13.3425
=============oooooo=============:ccc	chr7:45932720-45932952(+)$1	232	44	80	15.0382
d[ccc[bb[ccc[cccooooooccc]ccc]bb]ccc	chr17:70117191-70117462(+)$1	271	189	225	13.1088
!!dddd[iiiiiiiiinnnnniiiiiiiii]dddd5	chr13:113977480-113977714(+)$1	234	51	87	12.6970
ffffff[iiiiiiiiimmmmiiiiiiiii]ffffff	chr17:38078101-38078316(-)$1	215	2	38	14.4908
=========="""abbmmmmbb]a333=========	chr2:171573810-171574077(+)$1	267	169	205	17.7502
!!a"""==========oooooo==========22a2	chr22:38203104-38203326(+)$1	222	96	132	16.5197
d[eeeeeeeeee[cccmmmmccc]eeeee333eeee	chr20:30252263-30252510(-)$1	247	168	204	12.5945
[iiiiiiiii"""cccnnnnnccc333iiiiiiiii	chr7:127231551-127231826(+)$1	275	22	58	16.4545
==========####ccclllccc333==========	chr14:101201170-101201425(+)$1	255	140	176	18.0959
FF==============oooooo==============	chr10:74035504-74035776(+)$1	272	7	43	17.1768
DDiiiiiiiii[ddddmmmmdddd333iiiiiiiii	chr16:87865024-87865253(-)$1	229	2	38	13.2714
gg!!a[ccc!!eeeeemmmmeeeee22cccaggggg	chr22:29196364-29196621(-)$1	257	95	131	12.3248
iiiiii"""gggggggmmmmggggggg333iiiiii	chr5:73925037-73925276(-)$1	239	135	171	16.3331
fggggggg####ddddmmmmdddd333ggggggg::	chr14:24114607-24114847(+)$1	240	130	166	11.8014
iii!!a"""ccc[ccclllccc]ccc4444a22iii	chr10:73576920-73577161(-)$1	241	162	198	14.5079
========[hhhhhhhhlllhhhhhhhh]=======	chrX:131506498-131506847(-)$1	349	309	345	13.3201
iiiiiii[dddd!!bbmmmmbb333dddd333iiii	chr1:43392266-43392502(-)$1	236	117	153	14.7115
iiiiii[ccc[ccc[aooooooa]ccc]ccciiiii	chr7:45933054-45933283(+)$1	229	189	225	15.0598
!!dddd[iiiiiiiiinnnnniiiiiiiii]dddd5	chr13:113977514-113977725(+)$1	211	17	53	12.6970
ddddggggggg!!cccmmmmccc]ggggggg333dd	chr2:135206772-135207065(+)$1	293	68	104	14.6000
======!!eeeeecccmmmmccc]eeeee22=====	chr2:20648242-20648505(+)$1	263	50	86	15.1417
=========[bbddddnnnnndddd333bb]=====	chr2:20232539-20232765(-)$1	226	152	188	13.3446
!bb!!ggggggg!!bboooooobb4444ggggggg]	chr4:166419235-166419535(+)$1	300	253	289	13.7629
d"""eeeeebb!!cccmmmmccc22bb4444eeeee	chr16:18812673-18812938(-)$1	265	165	201	12.2664
==========####ccclllccc333==========	chr14:101201256-101201478(+)$1	222	54	90	18.0959
iiii!!ccc[ccccccmmmmccc]ccc333ccc22i	chr3:186796027-186796277(+)$1	250	129	165	14.8836
!!dddd[iiiiiiiiiooooooiiiiiiiii]dddd	chr17:37903203-37903503(+)$1	300	180	216	14.5565
!!ccc####gggggggmmmmggggggg333ccc444	chr17:53398471-53398738(+)$1	267	197	233	14.5754
gggggg[eeeee!!bbmmmmbb]eeeee4444gggg	chr10:120927377-120927654(-)$1	277	60	96	13.3140
[ffffff[ccc[cccooooooccc]ccc]ffffff]	chr19:54379270-54379543(+)$1	273	86	122	12.3501
iiiiiii[dddd!!bbmmmmbb333dddd333iiii	chr1:43392302-43392551(-)$1	249	166	202	14.7115

#otherMatches

#Seq PSSM
GAUAUCAGGGUGGUUAAUUAAAAUGAACCAGAUAUC	chr10:7791288-7791556(+)$1	268	103	139	11.6153
AUUACAUGUUAUGUAAAUUUUUAUGUGACUGACAUG	chr5:43291024-43291289(-)$1	265	155	191	13.5254
uguguguguguguguguguauauauauauauauGUA	chr6:132269607-132269834(-)$1	227	33	69	18.9425
GCUGUGAGUCCCUUGUGGAAUAUAAGGGGGUAGUGG	chr12:112460460-112460705(+)$1	245	57	93	15.0971
CGCCGCGGUAGCCGGCCGACGCGCCAGCUUCCCCGG	chr17:70117292-70117544(+)$1	252	88	124	13.1088
UUUGUUUGCACUAUUGGACUUAGGAGUGCCGAGGGU	chr17:36882530-36882801(+)$1	271	9	45	13.5554
UGCUUGCCUUUCCUGAAAGUUUCUGGGGCUUAAGAU	chr10:95351551-95351800(-)$1	249	128	164	12.6716
GGAGUCGGGGAAUAUUUGUGGGUAUUUUUUUUACUU	chr11:62392232-62392474(-)$1	242	73	109	17.3372
GGUCUUGGUGCCAGACGUAGGGAAUGGUGUUGGGAG	chr13:113977767-113978029(+)$1	262	98	134	16.5721
GGGAGAGGAGGGAUUGAUCACAGGCUUCUUUUAUUU	chr2:135206734-135206954(+)$1	220	106	142	14.6000
GAUGUUUUAUCACUUCUCUAAGUAAGGUUGAAAUAU	chr3:145787294-145787570(-)$1	276	182	218	15.0527
CUUUGCCAGCUCCUCCUAUCCCGUGGGCACUGGCCA	chr2:220047689-220047938(+)$1	249	152	188	11.9099
UUuauauauaugcauauauauaugugugugugugug	chrX:108885675-108885917(-)$1	242	73	109	13.2450
GACUUAGACCUCACAUAUUAAUGUUGAGAAGUUCUG	chr15:77241857-77242128(+)$1	271	173	209	13.2196
CUGUUUGGCAUGUUCCCACCGGGAGUGCCGGGCAGG	chrX:153664617-153664859(+)$1	242	154	190	14.7495
GAUUUAUAUGCUGUAUAUAAAUAUAUAUGUAAAUUG	chr14:70497258-70497518(+)$1	260	42	78	15.6113
UGGGGGAGAAAGGACCUCCUGGAACUGACUUCUUCU	chr5:177022410-177022665(+)$1	255	40	76	13.3425
UuauauauauauguauauguauauauauauaGUAAC	chr7:45932720-45932952(+)$1	232	44	80	15.0382
CGCCGCGGUAGCCGGCCGACGCGCCAGCUUCCCCGG	chr17:70117191-70117462(+)$1	271	189	225	13.1088
UUUAAAUAUAAAAAUGGGUGUUAUUUUUAUUUUUAU	chr13:113977480-113977714(+)$1	234	51	87	12.6970
GGAUGGGUCUUUGCCUUUCUGGGUAGGGAGCUGUCU	chr17:38078101-38078316(-)$1	215	2	38	14.4908
GGCGGAGGGGAGACUCAGCAGACGGACCCUCUCCGU	chr2:171573810-171574077(+)$1	267	169	205	17.7502
GUGUGCAUGUGUGUGUUUGUGUAUAUAUACAUAUCU	chr22:38203104-38203326(+)$1	222	96	132	16.5197
CCCACACUUGUUCCAGCUCUUUGAAAUAGUCUGUGU	chr20:30252263-30252510(-)$1	247	168	204	12.5945
AUGGAAGGGGCUUCCUGGCCAAGGCCCCCUCUUCCA	chr7:127231551-127231826(+)$1	275	22	58	16.4545
GUGUUCGCUAUCUCUUGUGUCAAAUCUGGUGAACGC	chr14:101201170-101201425(+)$1	255	140	176	18.0959
GUGGGUGUCAGGGAUCACUUGGGAUCUUUGACACUU	chr10:74035504-74035776(+)$1	272	7	43	17.1768
UCGGGGGGCUCUGCCUUCUCAGGCCCCGGGCUUCCC	chr16:87865024-87865253(-)$1	229	2	38	13.2714
CGUAGUCUGGAGCUAUGGUGGUGGUGGCAGCCGCGC	chr22:29196364-29196621(-)$1	257	95	131	12.3248
AGCUGUCUUCACAUGUAUGGACGUGUGUGAAUGGUU	chr5:73925037-73925276(-)$1	239	135	171	16.3331
CUUAAGGGAAAGGAGUAGAAGCUCAGGCCUUUGAAG	chr14:24114607-24114847(+)$1	240	130	166	11.8014
UGCCCCUUUUCUCUCUGCUAGAUGGAUGUUGAUGCA	chr10:73576920-73577161(-)$1	241	162	198	14.5079
uuaauauuuuaauauuauuuuaauauuauaauauua	chrX:131506498-131506847(-)$1	349	309	345	13.3201
GUGGAGACUAAGCCCUGUCGAGACACUUGCCUUCUU	chr1:43392266-43392502(-)$1	236	117	153	14.7115
AUAUUCUGCAUGGAAAUACUGUUAUCUCUGUGGAUG	chr7:45933054-45933283(+)$1	229	189	225	15.0598
UUUAAAUAUAAAAAUGGGUGUUAUUUUUAUUUUUAU	chr13:113977514-113977725(+)$1	211	17	53	12.6970
GGGAGAGGAGGGAUUGAUCACAGGCUUCUUUUAUUU	chr2:135206772-135207065(+)$1	293	68	104	14.6000
AUGGGGGGAUGuuauauaaauauagauauaauuuua	chr2:20648242-20648505(+)$1	263	50	86	15.1417
CCCUGAGUACUUUCAGGAAGACUGACUUAAAUAUUC	chr2:20232539-20232765(-)$1	226	152	188	13.3446
UUCUCUAAGAUUUUUGGUCUGGCAUUGUGGUCUUAU	chr4:166419235-166419535(+)$1	300	253	289	13.7629
AAUCGCAGCACCAACCUGCUGGUGAGUCCUGGCUGC	chr16:18812673-18812938(-)$1	265	165	201	12.2664
GUGUUCGCUAUCUCUUGUGUCAAAUCUGGUGAACGC	chr14:101201256-101201478(+)$1	222	54	90	18.0959
CUGUCUUCUUUGAUAGCCAUCUAUUCAUCUGGAUCA	chr3:186796027-186796277(+)$1	250	129	165	14.8836
UCUCCUAGCUCUGGAGGUGCUGCUCUAGGGCAGGGA	chr17:37903203-37903503(+)$1	300	180	216	14.5565
CUCAGUUUUUAAGAGUACAAGCUCUUGUUUCUGUUU	chr17:53398471-53398738(+)$1	267	197	233	14.5754
CUUUGUAUUAAACUGAAUUUUCUUUUAAGCUAACAA	chr10:120927377-120927654(-)$1	277	60	96	13.3140
UGUUCUCUUUUGCCCGUAGGUGGGAGGGUGGGGAUU	chr19:54379270-54379543(+)$1	273	86	122	12.3501
GUGGAGACUAAGCCCUGUCGAGACACUUGCCUUCUU	chr1:43392302-43392551(-)$1	249	166	202	14.7115

#DB
((((((.((.(.(((......))).).)).))))))	chr10:7791288-7791556(+)$1	1	103	139	11.6153
))))((.(((((((((....)))))))))))(((((	chr5:43291024-43291289(-)$1	1	155	191	13.5254
((((((((((((((((....))))))))))))))))	chr6:132269607-132269834(-)$1	1	33	69	18.9425
.(((..(.(((((((((...))))))))).)..)))	chr12:112460460-112460705(+)$1	1	57	93	15.0971
(.(((.((.(((.(((......))).))).)).)))	chr17:70117292-70117544(+)$1	1	88	124	13.1088
((.....(((((.(((....))).))))).))))))	chr17:36882530-36882801(+)$1	1	9	45	13.5554
(....(((...((.(((...))).)))))...))))	chr10:95351551-95351800(-)$1	1	128	164	12.6716
(((((.((((((((((....))))))))))..))))	chr11:62392232-62392474(-)$1	1	73	109	17.3372
.((((((((((((..(.....)..))))))))))).	chr13:113977767-113978029(+)$1	1	98	134	16.5721
(((((((((((..(((....))).)))))))...))	chr2:135206734-135206954(+)$1	1	106	142	14.6000
(((((((((.(.(((((...)).)))).))))))))	chr3:145787294-145787570(-)$1	1	182	218	15.0527
(((.(((((..(((.(......).)))..))))).)	chr2:220047689-220047938(+)$1	1	152	188	11.9099
...(((((((((((((....))))))))))))))))	chrX:108885675-108885917(-)$1	1	73	109	13.2450
(((((....(((((((....))).))))))))))).	chr15:77241857-77242128(+)$1	1	173	209	13.2196
)((((((((((..((((...)))))))))))))).(	chrX:153664617-153664859(+)$1	1	154	190	14.7495
((((((((((.(((((....))))))))))))))).	chr14:70497258-70497518(+)$1	1	42	78	15.6113
.(((((((..((..((....))..))..))))))).	chr5:177022410-177022665(+)$1	1	40	76	13.3425
(((((((((((((......))))))))))))).(((	chr7:45932720-45932952(+)$1	1	44	80	15.0382
(.(((.((.(((.(((......))).))).)).)))	chr17:70117191-70117462(+)$1	1	189	225	13.1088
..((((.(((((((((.....))))))))).)))).	chr13:113977480-113977714(+)$1	1	51	87	12.6970
((((((.(((((((((....))))))))).))))))	chr17:38078101-38078316(-)$1	1	2	38	14.4908
((((((((((...(((....)).)...)))))))))	chr2:171573810-171574077(+)$1	1	169	205	17.7502
..(...((((((((((......))))))))))..).	chr22:38203104-38203326(+)$1	1	96	132	16.5197
(.((((((((((.(((....))).)))))...))))	chr20:30252263-30252510(-)$1	1	168	204	12.5945
.(((((((((...(((.....)))...)))))))))	chr7:127231551-127231826(+)$1	1	22	58	16.4545
((((((((((....(((...)))...))))))))))	chr14:101201170-101201425(+)$1	1	140	176	18.0959
((((((((((((((((......))))))))))))))	chr10:74035504-74035776(+)$1	1	7	43	17.1768
(((((((((((.((((....))))...)))))))))	chr16:87865024-87865253(-)$1	1	2	38	13.2714
((..(.(((..(((((....)))))..)))))))))	chr22:29196364-29196621(-)$1	1	95	131	12.3248
((((((...(((((((....)))))))...))))))	chr5:73925037-73925276(-)$1	1	135	171	16.3331
)(((((((....((((....))))...)))))))..	chr14:24114607-24114847(+)$1	1	130	166	11.8014
(((..(...(((.(((...))).)))....)..)))	chr10:73576920-73577161(-)$1	1	162	198	14.5079
((((((((.((((((((...)))))))).)))))))	chrX:131506498-131506847(-)$1	1	309	345	13.3201
(((((((.((((..((....))...))))...))))	chr1:43392266-43392502(-)$1	1	117	153	14.7115
((((((.(((.(((.(......).))).))))))))	chr7:45933054-45933283(+)$1	1	189	225	15.0598
..((((.(((((((((.....))))))))).)))).	chr13:113977514-113977725(+)$1	1	17	53	12.6970
(((((((((((..(((....))).)))))))...))	chr2:135206772-135207065(+)$1	1	68	104	14.6000
((((((..((((((((....))).)))))..)))))	chr2:20648242-20648505(+)$1	1	50	86	15.1417
(((((((((.((((((.....))))...)).)))))	chr2:20232539-20232765(-)$1	1	152	188	13.3446
.((..(((((((..((......))....))))))).	chr4:166419235-166419535(+)$1	1	253	289	13.7629
(...(((((((..(((....)))..))....)))))	chr16:18812673-18812938(-)$1	1	165	201	12.2664
((((((((((....(((...)))...))))))))))	chr14:101201256-101201478(+)$1	1	54	90	18.0959
((((..(((.((((((....))).)))...)))..)	chr3:186796027-186796277(+)$1	1	129	165	14.8836
..((((.(((((((((......))))))))).))))	chr17:37903203-37903503(+)$1	1	180	216	14.5565
..(((....(((((((....)))))))...)))...	chr17:53398471-53398738(+)$1	1	197	233	14.5754
((((((.(((((..((....)).)))))....))))	chr10:120927377-120927654(-)$1	1	60	96	13.3140
.((((((.(((.(((......))).))).)))))).	chr19:54379270-54379543(+)$1	1	86	122	12.3501
(((((((.((((..((....))...))))...))))	chr1:43392302-43392551(-)$1	1	166	202	14.7115

#PSSM
= : 0.18	i : 0.16	! : 0.14	d : 0.12	f : 0.10	g : 0.08	[ : 0.08	c : 0.02	: : 0.02	e : 0.02	F : 0.02	D : 0.02	
= : 0.20	i : 0.18	g : 0.12	! : 0.10	f : 0.08	[ : 0.06	c : 0.04	d : 0.04	# : 0.02	a : 0.02	: : 0.02	F : 0.02	D : 0.02	b : 0.02	" : 0.02	
= : 0.25	i : 0.18	c : 0.10	g : 0.10	d : 0.10	f : 0.08	$ : 0.02	# : 0.02	: : 0.02	a : 0.02	e : 0.02	! : 0.02	b : 0.02	" : 0.02	
= : 0.27	i : 0.16	g : 0.10	d : 0.10	f : 0.08	c : 0.08	! : 0.06	" : 0.04	$ : 0.02	# : 0.02	[ : 0.02	e : 0.02	
= : 0.27	g : 0.14	i : 0.14	! : 0.08	f : 0.06	c : 0.06	e : 0.06	d : 0.06	b : 0.02	$ : 0.02	# : 0.02	" : 0.02	a : 0.02	
= : 0.27	i : 0.14	g : 0.12	[ : 0.08	f : 0.06	e : 0.06	d : 0.06	! : 0.04	# : 0.04	b : 0.02	$ : 0.02	c : 0.02	" : 0.02	a : 0.02	
= : 0.29	[ : 0.16	g : 0.10	i : 0.10	c : 0.06	e : 0.06	b : 0.04	# : 0.04	" : 0.04	a : 0.02	$ : 0.02	! : 0.02	f : 0.02	
= : 0.29	i : 0.16	e : 0.10	g : 0.10	[ : 0.08	c : 0.08	b : 0.06	# : 0.04	" : 0.04	! : 0.02	
= : 0.27	i : 0.18	e : 0.12	c : 0.08	[ : 0.06	" : 0.06	g : 0.06	# : 0.06	d : 0.04	b : 0.02	! : 0.02	
= : 0.25	i : 0.16	c : 0.10	g : 0.10	[ : 0.08	e : 0.08	! : 0.06	d : 0.06	" : 0.02	# : 0.02	h : 0.02	b : 0.02	
= : 0.16	i : 0.14	c : 0.10	g : 0.10	e : 0.08	" : 0.06	d : 0.06	b : 0.06	# : 0.06	a : 0.04	! : 0.04	[ : 0.04	h : 0.02	
= : 0.14	i : 0.12	c : 0.12	e : 0.12	[ : 0.08	! : 0.08	b : 0.06	d : 0.06	# : 0.06	g : 0.06	" : 0.04	h : 0.02	
! : 0.18	= : 0.14	c : 0.12	i : 0.12	[ : 0.10	d : 0.08	e : 0.06	" : 0.04	# : 0.04	g : 0.04	b : 0.02	h : 0.02	
c : 0.35	i : 0.12	! : 0.12	= : 0.10	d : 0.08	e : 0.04	# : 0.04	g : 0.04	[ : 0.02	o : 0.02	a : 0.02	h : 0.02	
c : 0.37	i : 0.12	b : 0.12	= : 0.10	d : 0.08	[ : 0.04	e : 0.04	g : 0.04	! : 0.02	o : 0.02	h : 0.02	
c : 0.31	b : 0.14	i : 0.12	= : 0.10	d : 0.08	o : 0.06	a : 0.06	e : 0.04	g : 0.04	h : 0.02	
m : 0.49	o : 0.22	n : 0.10	c : 0.06	i : 0.02	b : 0.02	d : 0.02	l : 0.02	h : 0.02	
m : 0.49	o : 0.22	l : 0.16	n : 0.10	
m : 0.49	o : 0.22	l : 0.16	n : 0.10	
m : 0.49	o : 0.20	l : 0.14	n : 0.10	= : 0.02	c : 0.02	
c : 0.25	o : 0.20	b : 0.12	n : 0.10	= : 0.08	i : 0.06	d : 0.06	e : 0.04	g : 0.04	h : 0.02	
c : 0.31	o : 0.16	b : 0.12	i : 0.10	= : 0.08	d : 0.08	e : 0.04	g : 0.04	a : 0.02	h : 0.02	
c : 0.33	i : 0.12	= : 0.12	] : 0.08	d : 0.08	2 : 0.04	a : 0.04	e : 0.04	g : 0.04	3 : 0.04	h : 0.02	b : 0.02	
] : 0.20	c : 0.14	i : 0.12	= : 0.12	d : 0.08	3 : 0.08	2 : 0.06	e : 0.06	g : 0.04	a : 0.02	h : 0.02	b : 0.02	
= : 0.16	3 : 0.16	c : 0.14	i : 0.12	e : 0.12	g : 0.08	] : 0.04	b : 0.04	d : 0.04	h : 0.02	4 : 0.02	2 : 0.02	
= : 0.18	3 : 0.14	i : 0.12	c : 0.12	e : 0.08	g : 0.08	b : 0.06	d : 0.06	] : 0.04	a : 0.02	2 : 0.02	h : 0.02	4 : 0.02	
= : 0.22	c : 0.14	i : 0.12	3 : 0.10	e : 0.08	g : 0.08	d : 0.06	2 : 0.04	4 : 0.04	] : 0.02	a : 0.02	h : 0.02	b : 0.02	
= : 0.25	i : 0.16	c : 0.10	e : 0.08	3 : 0.08	g : 0.06	d : 0.06	4 : 0.06	] : 0.04	2 : 0.04	b : 0.02	h : 0.02	
= : 0.25	i : 0.18	g : 0.12	c : 0.10	e : 0.06	3 : 0.06	4 : 0.06	b : 0.04	] : 0.04	d : 0.04	2 : 0.02	
= : 0.27	3 : 0.14	] : 0.12	g : 0.12	i : 0.12	4 : 0.06	b : 0.04	c : 0.04	e : 0.02	2 : 0.02	f : 0.02	
= : 0.25	i : 0.12	g : 0.12	3 : 0.08	f : 0.06	b : 0.06	a : 0.06	] : 0.06	c : 0.06	2 : 0.04	4 : 0.04	e : 0.02	
= : 0.29	i : 0.12	3 : 0.12	g : 0.10	f : 0.08	2 : 0.06	b : 0.04	e : 0.04	d : 0.04	c : 0.04	] : 0.02	4 : 0.02	
= : 0.25	i : 0.16	g : 0.14	f : 0.10	2 : 0.06	e : 0.06	d : 0.06	] : 0.04	3 : 0.04	c : 0.04	: : 0.02	
= : 0.22	i : 0.18	g : 0.14	f : 0.10	c : 0.08	e : 0.06	d : 0.06	3 : 0.04	2 : 0.04	F : 0.02	4 : 0.02	
= : 0.20	i : 0.18	g : 0.12	f : 0.10	d : 0.10	c : 0.08	: : 0.04	e : 0.04	] : 0.02	F : 0.02	a : 0.02	2 : 0.02	4 : 0.02	
i : 0.20	= : 0.16	f : 0.10	c : 0.10	] : 0.08	g : 0.06	d : 0.06	5 : 0.04	e : 0.04	F : 0.02	7 : 0.02	6 : 0.02	2 : 0.02	: : 0.02	4 : 0.02	

#score	693.7141931689725
#seq	48
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_UTR_m1_run1.txt

#BEAR
!!ccc[a[bb^^^^^^^^^^^^^^^^^^^^^bb]acc	chr19:45324485-45324724(+)$1	239	66	103	36.0215
ddbb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2159587-2159796(-)$1	209	156	193	48.8900
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr20:33298170-33298442(+)$1	272	60	97	49.5659
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:45323656-45324017(+)$1	361	135	172	49.5659
[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bbb	chr6:43472751-43473071(+)$1	320	104	141	45.8343
[ccc^^^^^^^^^^^^^^^^^^^^^ccc]bbGGGGGG	chr16:67267637-67267939(-)$1	302	150	187	34.4549
hhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:57824535-57824760(-)$1	225	25	62	48.4544
eeeee^^^^^^^^^^^^^^^^^^^^^^eeeee]bb22	chr2:204305091-204305473(-)$1	382	166	203	37.1203
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:45323594-45323856(+)$1	262	197	234	49.5659
dddd^^^^^^^^^^^^^^^^^^^dddd88888888cc	chr11:2159603-2159810(-)$1	207	45	82	36.2936
====^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160203-2160408(-)$1	205	11	48	49.2322
dddd^^^^^^^^^^^^^^^^^^^dddd88888888cc	chr11:2159623-2159826(-)$1	203	61	98	36.2936
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd33	chr14:105361360-105361635(+)$1	275	133	170	44.5216
====^^^^^^^^^^^^^^^^^^^^^^^^=========	chr4:185309136-185309513(-)$1	377	171	208	40.5716
gggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gg	chr11:68659395-68659675(-)$1	280	3	40	47.4932
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr9:139942845-139943095(-)$1	250	169	206	49.5659
cc[bb^^^^^^^^^^^^^^^^^^^^^bb333ccc:::	chr17:42475035-42475330(-)$1	295	189	226	35.8122
eeee[ccc^^^^^^^^^^^^^^^^^^^^^^^ccceee	chr11:2160023-2160246(-)$1	223	29	66	38.1114
dddd^^^^^^^^^^^^^^^^^^^^dddd]bb333eee	chr6:41567000-41567241(+)$1	241	121	158	35.8115
====^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160322-2160535(-)$1	213	138	175	49.2322
dddd[dddd^^^^^^^^^^^^^^^^^^^^^^dddd]d	chr2:242694628-242694976(+)$1	348	26	63	36.0048
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr8:22432328-22432621(+)$1	293	110	147	49.5659
ffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ff	chr8:38270933-38271198(-)$1	265	50	87	46.7371
hhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160193-2160401(-)$1	208	4	41	48.4544
dddd^^^^^^^^^^^^^^^^^^^^^^^ddddddddee	chr7:143087760-143088031(+)$1	271	110	147	38.5921
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:7154822-7155087(-)$1	265	70	107	49.0087
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:29910632-29910913(-)$1	281	79	116	49.5659
dddd^^^^^^^^^^^^^^^^^^^^^dddd55555ccc	chr7:917372-917670(+)$1	298	34	71	37.1315
====^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160250-2160477(-)$1	227	80	117	49.2322
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:45323212-45323479(+)$1	267	6	43	49.5659
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^cc	chr20:307531-307776(+)$1	245	163	200	47.7279
dddd^^^^^^^^^^^^^^^^^^^dddd88888888cc	chr11:2159639-2159842(-)$1	203	77	114	36.2936
====^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160335-2160570(-)$1	235	173	210	49.2322
dddd^^^^^^^^^^^^^^^^^^^^^^^^^dddd::::	chr19:45323279-45323540(+)$1	261	128	165	39.7855
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chr1:155260051-155260316(-)$1	265	56	93	44.9755
eeeee^^^^^^^^^^^^^^^^^^^^^^eeeeebb:::	chr1:27480973-27481268(-)$1	295	78	115	35.6570
iiii^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ii	chr2:200322720-200322974(-)$1	254	125	162	47.5713
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]	chr7:143079893-143080201(+)$1	308	29	66	45.9942
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:45323340-45323577(+)$1	237	68	105	49.0087
accc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]a22	chr2:200322626-200322894(-)$1	268	60	97	43.2918
====^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160220-2160431(-)$1	211	34	71	49.2322
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:204305008-204305267(-)$1	259	156	193	49.5659
ffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:70695049-70695355(-)$1	306	45	82	48.3876
gggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:49461911-49462173(-)$1	262	117	154	49.0169
::bb^^^^^^^^^^^^^^^^^^^^^^^^^bb::::::	chr9:132900650-132901026(+)$1	376	104	141	36.0223
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:29910713-29910958(-)$1	245	124	161	49.5659
g[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:47452084-47452380(+)$1	296	172	209	48.5748
hhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:57824560-57824824(-)$1	264	89	126	48.4544
eeeee^^^^^^^^^^^^^^^^^^^^^^eeeee333dd	chr2:242756898-242757240(+)$1	342	87	124	38.1763
dddd^^^^^^^^^^^^^^^^^^^^^^^^^dddd]bb:	chr17:29422023-29422294(+)$1	271	111	148	41.1333
====^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160231-2160449(-)$1	218	52	89	49.2322
dddd^^^^^^^^^^^^^^^^^^^^^^dddd::eeeee	chr12:53846030-53846263(+)$1	233	133	170	36.4714
eeeee^^^^^^^^^^^^^^^^^^^^^^eeeee333dd	chr2:242756839-242757098(+)$1	259	146	183	38.1763
====^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160289-2160492(-)$1	203	95	132	49.2322
"ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:29910536-29910832(-)$1	296	8	45	49.0548
ccffffff^^^^^^^^^^^^^^^^^^^^^^^ffffff	chr6:41566871-41567150(+)$1	279	100	137	36.4841
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:204305273-204305562(-)$1	289	238	275	49.5659
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:87733963-87734300(-)$1	337	81	118	49.5659
gggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr12:7024783-7025030(+)$1	247	57	94	45.4897

#otherMatches

#Seq PSSM
CUGACACUGGAUUccccccccucaccccgccccuggu	chr19:45324485-45324724(+)$1	239	66	103	36.0215
GACGAAUUCUCCCCCCCCCCCCAAAAAAAAGCCAUCC	chr11:2159587-2159796(-)$1	209	156	193	48.8900
GUUCCUUCCCCGACACCCUCAAUUUCCCCAUCUCUGA	chr20:33298170-33298442(+)$1	272	60	97	49.5659
gugccauuaccagccccuaccccaucccuaugccauc	chr19:45323656-45324017(+)$1	361	135	172	49.5659
CUGAACCCCUACCCAACCCCGUCUCCACCACACCCAC	chr6:43472751-43473071(+)$1	320	104	141	45.8343
UGGCUGCCCCUCUUCCCCAUUCAGUGCCUGACAGCUC	chr16:67267637-67267939(-)$1	302	150	187	34.4549
uugguuccccccuuuucuuccccucuccccccuccuu	chr12:57824535-57824760(-)$1	225	25	62	48.4544
UUCCACCCCCUCCAACUCCCCCUGCCAUGGAAUCUCA	chr2:204305091-204305473(-)$1	382	166	203	37.1203
gugccauuaccagccccuaccccaucccuaugccauc	chr19:45323594-45323856(+)$1	262	197	234	49.5659
uaucucugccccccucuauccuuGAUACAACAGCUGA	chr11:2159603-2159810(-)$1	207	45	82	36.2936
CCUCUUCAUCUACCUCAACUCCCCCCAUCCCCGCUUC	chr11:2160203-2160408(-)$1	205	11	48	49.2322
uaucucugccccccucuauccuuGAUACAACAGCUGA	chr11:2159623-2159826(-)$1	203	61	98	36.2936
GGCCACCCCCACCCCUGCCUCGCCCCCUACAGGCCUC	chr14:105361360-105361635(+)$1	275	133	170	44.5216
CUUCCCUCAAAGCUUCCAUUCCACAUCCGGAGGAGAA	chr4:185309136-185309513(-)$1	377	171	208	40.5716
cgugacccaccucgcuccccuucuccuccacccuccg	chr11:68659395-68659675(-)$1	280	3	40	47.4932
cgcuccaccccACCACUGUCUUCUCCAUCCUUCCACC	chr9:139942845-139943095(-)$1	250	169	206	49.5659
CUAGCCAUCCCAUCCACAUCAUUCCCGCCUCAGCCAU	chr17:42475035-42475330(-)$1	295	189	226	35.8122
CCGGUGCCGCCACCGCCUGUCCCCCUCCCGAGGCCCG	chr11:2160023-2160246(-)$1	223	29	66	38.1114
GUGCUCCCUUCCGCCUUCUUUUCCGUACUGUGAAGAA	chr6:41567000-41567241(+)$1	241	121	158	35.8115
CCUCUUCAUCUACCUCAACUCCCCCCAUCCCCGCUUC	chr11:2160322-2160535(-)$1	213	138	175	49.2322
GUGGCCCACCCACCAUGUCCUUCCCUCCCCUGUGGCC	chr2:242694628-242694976(+)$1	348	26	63	36.0048
CCUCCCACAGCCCUUUCAUUUCCUCCCCACCCCACUC	chr8:22432328-22432621(+)$1	293	110	147	49.5659
UGACUGCCACCCACACGCCCUCCCCAGACUCCACCGU	chr8:38270933-38271198(-)$1	265	50	87	46.7371
CCUCUUCAUCUACCUCAACUCCCCCCAUCCCCGCUUC	chr11:2160193-2160401(-)$1	208	4	41	48.4544
CUAGCCCCUCCCAUUUCCAACCCCUCCCUAGCAUCCC	chr7:143087760-143088031(+)$1	271	110	147	38.5921
gcuuucccccccuccccuucccuuuucccuuccuccc	chr17:7154822-7155087(-)$1	265	70	107	49.0087
UCGGCUCUCCCAGUUCCCCAACCCACCCCUUCCCCUC	chr16:29910632-29910913(-)$1	281	79	116	49.5659
ggcccccaccuguuccccuccccguggccuucccaga	chr7:917372-917670(+)$1	298	34	71	37.1315
CCUCUUCAUCUACCUCAACUCCCCCCAUCCCCGCUUC	chr11:2160250-2160477(-)$1	227	80	117	49.2322
gggccauccccaaacccauccccaagccaaacucaac	chr19:45323212-45323479(+)$1	267	6	43	49.5659
GGCAGCCCAACCCCCACCCCUUCCCCGACACCCAAGC	chr20:307531-307776(+)$1	245	163	200	47.7279
uaucucugccccccucuauccuuGAUACAACAGCUGA	chr11:2159639-2159842(-)$1	203	77	114	36.2936
CCUCUUCAUCUACCUCAACUCCCCCCAUCCCCGCUUC	chr11:2160335-2160570(-)$1	235	173	210	49.2322
cuggccacauccccauccucccccaaccuccagcccc	chr19:45323279-45323540(+)$1	261	128	165	39.7855
CCUCUCUUCUCUAUUCCUGACCCUCCCUACCUGAGGC	chr1:155260051-155260316(-)$1	265	56	93	44.9755
AAAGGUCCCAGCCUUCCUUCUUCCUUUCCUUUGCACU	chr1:27480973-27481268(-)$1	295	78	115	35.6570
UAAUCCAGAGACUUCCCCUACCCCCACCCCAAAUUAU	chr2:200322720-200322974(-)$1	254	125	162	47.5713
GGCCACUCCAUUCAGUUCCAAGUCCAGUACCAAGCCU	chr7:143079893-143080201(+)$1	308	29	66	45.9942
uggccacauccccauccucccccaaccuccagcccca	chr19:45323340-45323577(+)$1	237	68	105	49.0087
CCCUACCCCCACCCCAAAUUAUUAUUUUGAAGGCGCU	chr2:200322626-200322894(-)$1	268	60	97	43.2918
CCUCUUCAUCUACCUCAACUCCCCCCAUCCCCGCUUC	chr11:2160220-2160431(-)$1	211	34	71	49.2322
ugucccagccccaccaccaccaccuccacccacagcu	chr2:204305008-204305267(-)$1	259	156	193	49.5659
GUUCCUACUCACCCUCCCCCCCUCCCCCACCCUCCGU	chr16:70695049-70695355(-)$1	306	45	82	48.3876
GCUGCAACUCAAUUCUUCCUUCUACCCAAAAACACUC	chr3:49461911-49462173(-)$1	262	117	154	49.0169
ucgcccuuaccccucccccuuccccuuccgcuccucc	chr9:132900650-132901026(+)$1	376	104	141	36.0223
UCGGCUCUCCCAGUUCCCCAACCCACCCCUUCCCCUC	chr16:29910713-29910958(-)$1	245	124	161	49.5659
GACUCCUACCCCCACAAUCCCCCUACCCCUAUGCCCC	chr3:47452084-47452380(+)$1	296	172	209	48.5748
uugguuccccccuuuucuuccccucuccccccuccuu	chr12:57824560-57824824(-)$1	264	89	126	48.4544
CCACAACUUUCCCUCCACCCCAUCCUCUGUGGCCACC	chr2:242756898-242757240(+)$1	342	87	124	38.1763
cgcccccuuucccucucccccucccgcucggcgcuga	chr17:29422023-29422294(+)$1	271	111	148	41.1333
CCUCUUCAUCUACCUCAACUCCCCCCAUCCCCGCUUC	chr11:2160231-2160449(-)$1	218	52	89	49.2322
AGCCUAAAAAUUUCCCUUGCGCCCCCGGCUAUGGCUA	chr12:53846030-53846263(+)$1	233	133	170	36.4714
CCACAACUUUCCCUCCACCCCAUCCUCUGUGGCCACC	chr2:242756839-242757098(+)$1	259	146	183	38.1763
CCUCUUCAUCUACCUCAACUCCCCCCAUCCCCGCUUC	chr11:2160289-2160492(-)$1	203	95	132	49.2322
CAGUUCCCCAACCCACCCCUUCCCCUCCCCGACAAGC	chr16:29910536-29910832(-)$1	296	8	45	49.0548
AGGGCCCUCCUCCCCCACCAGCUCUCCCCACAGGGCC	chr6:41566871-41567150(+)$1	279	100	137	36.4841
GCAGAUAGCCAGCCAGUUUCCACCCCCUCCAACUCCC	chr2:204305273-204305562(-)$1	289	238	275	49.5659
uuccucccuccaccucuucucuccucccuccacccuc	chr16:87733963-87734300(-)$1	337	81	118	49.5659
GCAGCCAGCGCCUCCCUACCCACCCCCCACCCACUGC	chr12:7024783-7025030(+)$1	247	57	94	45.4897

#DB
..(((.(.((.....................)).)))	chr19:45324485-45324724(+)$1	1	66	103	36.0215
((((.................................	chr11:2159587-2159796(-)$1	1	156	193	48.8900
((((.................................	chr20:33298170-33298442(+)$1	1	60	97	49.5659
((((.................................	chr19:45323656-45324017(+)$1	1	135	172	49.5659
.((...............................)))	chr6:43472751-43473071(+)$1	1	104	141	45.8343
.(((.....................))).))((((((	chr16:67267637-67267939(-)$1	1	150	187	34.4549
((((.................................	chr12:57824535-57824760(-)$1	1	25	62	48.4544
(((((......................))))).))..	chr2:204305091-204305473(-)$1	1	166	203	37.1203
((((.................................	chr19:45323594-45323856(+)$1	1	197	234	49.5659
((((...................))))........))	chr11:2159603-2159810(-)$1	1	45	82	36.2936
((((.................................	chr11:2160203-2160408(-)$1	1	11	48	49.2322
((((...................))))........))	chr11:2159623-2159826(-)$1	1	61	98	36.2936
((((...........................))))..	chr14:105361360-105361635(+)$1	1	133	170	44.5216
((((........................)))))))))	chr4:185309136-185309513(-)$1	1	171	208	40.5716
((((...............................))	chr11:68659395-68659675(-)$1	1	3	40	47.4932
((((.................................	chr9:139942845-139943095(-)$1	1	169	206	49.5659
((.((.....................))...)))...	chr17:42475035-42475330(-)$1	1	189	226	35.8122
((((.(((.......................))))))	chr11:2160023-2160246(-)$1	1	29	66	38.1114
((((....................)))).))...)))	chr6:41567000-41567241(+)$1	1	121	158	35.8115
((((.................................	chr11:2160322-2160535(-)$1	1	138	175	49.2322
((((.((((......................)))).)	chr2:242694628-242694976(+)$1	1	26	63	36.0048
((((.................................	chr8:22432328-22432621(+)$1	1	110	147	49.5659
((((...............................))	chr8:38270933-38271198(-)$1	1	50	87	46.7371
((((.................................	chr11:2160193-2160401(-)$1	1	4	41	48.4544
((((.......................))))))))((	chr7:143087760-143088031(+)$1	1	110	147	38.5921
(((..................................	chr17:7154822-7155087(-)$1	1	70	107	49.0087
((((.................................	chr16:29910632-29910913(-)$1	1	79	116	49.5659
((((.....................)))).....)))	chr7:917372-917670(+)$1	1	34	71	37.1315
((((.................................	chr11:2160250-2160477(-)$1	1	80	117	49.2322
((((.................................	chr19:45323212-45323479(+)$1	1	6	43	49.5659
(((................................))	chr20:307531-307776(+)$1	1	163	200	47.7279
((((...................))))........))	chr11:2159639-2159842(-)$1	1	77	114	36.2936
((((.................................	chr11:2160335-2160570(-)$1	1	173	210	49.2322
((((.........................))))....	chr19:45323279-45323540(+)$1	1	128	165	39.7855
((((............................)))).	chr1:155260051-155260316(-)$1	1	56	93	44.9755
(((((......................)))))))...	chr1:27480973-27481268(-)$1	1	78	115	35.6570
((((...............................))	chr2:200322720-200322974(-)$1	1	125	162	47.5713
(((..............................))).	chr7:143079893-143080201(+)$1	1	29	66	45.9942
(((..................................	chr19:45323340-45323577(+)$1	1	68	105	49.0087
((((..........................))).)..	chr2:200322626-200322894(-)$1	1	60	97	43.2918
((((.................................	chr11:2160220-2160431(-)$1	1	34	71	49.2322
((((.................................	chr2:204305008-204305267(-)$1	1	156	193	49.5659
((((.................................	chr16:70695049-70695355(-)$1	1	45	82	48.3876
((((.................................	chr3:49461911-49462173(-)$1	1	117	154	49.0169
..((.........................))......	chr9:132900650-132901026(+)$1	1	104	141	36.0223
((((.................................	chr16:29910713-29910958(-)$1	1	124	161	49.5659
(.((.................................	chr3:47452084-47452380(+)$1	1	172	209	48.5748
((((.................................	chr12:57824560-57824824(-)$1	1	89	126	48.4544
(((((......................)))))...))	chr2:242756898-242757240(+)$1	1	87	124	38.1763
((((.........................)))).)).	chr17:29422023-29422294(+)$1	1	111	148	41.1333
((((.................................	chr11:2160231-2160449(-)$1	1	52	89	49.2322
((((......................))))..(((((	chr12:53846030-53846263(+)$1	1	133	170	36.4714
(((((......................)))))...))	chr2:242756839-242757098(+)$1	1	146	183	38.1763
((((.................................	chr11:2160289-2160492(-)$1	1	95	132	49.2322
.(((.................................	chr16:29910536-29910832(-)$1	1	8	45	49.0548
))((((((.......................))))))	chr6:41566871-41567150(+)$1	1	100	137	36.4841
((((.................................	chr2:204305273-204305562(-)$1	1	238	275	49.5659
((((.................................	chr16:87733963-87734300(-)$1	1	81	118	49.5659
((((.............................))))	chr12:7024783-7025030(+)$1	1	57	94	45.4897

#PSSM
d : 0.40	= : 0.13	c : 0.10	e : 0.08	g : 0.06	h : 0.05	[ : 0.03	f : 0.03	! : 0.01	i : 0.01	a : 0.01	: : 0.01	" : 0.01	
d : 0.40	c : 0.15	= : 0.13	e : 0.08	h : 0.05	g : 0.05	f : 0.03	! : 0.01	b : 0.01	i : 0.01	: : 0.01	[ : 0.01	
d : 0.38	c : 0.13	= : 0.13	e : 0.08	b : 0.06	h : 0.05	g : 0.05	f : 0.05	[ : 0.01	i : 0.01	
d : 0.38	= : 0.13	^ : 0.08	e : 0.08	c : 0.06	b : 0.06	h : 0.05	g : 0.05	f : 0.05	i : 0.01	
^ : 0.84	e : 0.06	[ : 0.03	c : 0.01	b : 0.01	f : 0.01	
^ : 0.93	[ : 0.01	c : 0.01	d : 0.01	f : 0.01	
^ : 0.93	a : 0.01	c : 0.01	d : 0.01	f : 0.01	
^ : 0.93	[ : 0.01	c : 0.01	d : 0.01	f : 0.01	
^ : 0.96	b : 0.01	d : 0.01	
^ : 0.98	b : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.94	d : 0.05	
^ : 0.93	d : 0.06	
^ : 0.89	d : 0.08	c : 0.01	
^ : 0.86	d : 0.10	c : 0.01	b : 0.01	
^ : 0.77	e : 0.06	d : 0.06	8 : 0.05	c : 0.01	b : 0.01	
^ : 0.76	e : 0.06	8 : 0.05	d : 0.05	] : 0.03	= : 0.01	3 : 0.01	
^ : 0.71	e : 0.06	d : 0.06	b : 0.05	8 : 0.05	= : 0.01	3 : 0.01	5 : 0.01	
^ : 0.69	e : 0.06	b : 0.05	8 : 0.05	d : 0.05	= : 0.01	3 : 0.01	5 : 0.01	c : 0.01	: : 0.01	
^ : 0.61	d : 0.08	e : 0.06	8 : 0.05	c : 0.05	: : 0.03	b : 0.01	G : 0.01	= : 0.01	3 : 0.01	5 : 0.01	f : 0.01	
^ : 0.59	d : 0.10	8 : 0.05	c : 0.05	3 : 0.05	b : 0.03	G : 0.01	] : 0.01	= : 0.01	5 : 0.01	: : 0.01	e : 0.01	f : 0.01	
^ : 0.55	d : 0.06	] : 0.05	8 : 0.05	c : 0.05	3 : 0.05	b : 0.03	: : 0.03	G : 0.01	= : 0.01	5 : 0.01	e : 0.01	f : 0.01	g : 0.01	
^ : 0.54	d : 0.06	: : 0.06	b : 0.05	8 : 0.05	e : 0.05	a : 0.03	c : 0.03	3 : 0.03	G : 0.01	= : 0.01	f : 0.01	g : 0.01	
^ : 0.47	c : 0.11	: : 0.06	e : 0.06	d : 0.05	b : 0.03	2 : 0.03	g : 0.03	f : 0.03	G : 0.01	3 : 0.01	= : 0.01	] : 0.01	i : 0.01	
^ : 0.47	c : 0.10	: : 0.08	e : 0.06	d : 0.05	2 : 0.03	g : 0.03	f : 0.03	] : 0.03	b : 0.01	G : 0.01	3 : 0.01	= : 0.01	i : 0.01	

#score	2617.2130590728307
#seq	59
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_transcript_m1_run1.txt

#BEAR
[ggggggg"""a[ddddnnnnndddd]a333ggggggg]	chr16:2643184-2643493(+)$1	309	161	200	13.9101
:eeeee[iiiiiiiiiooooooiiiiiiiii]eeeeedd	chr6:3748789-3749049(-)$1	260	208	247	16.5800
eeee[===========ppppppp===========]eeee	chr19:19534192-19534496(+)$1	304	12	51	15.1111
cc[iiiiiiiii[bbrrrrrrrrrbb]iiiiiiiii]cc	chr12:121159738-121160010(+)$1	272	140	179	15.9773
c"""===========ssssssssss===========]cc	chr9:34198443-34198731(+)$1	288	147	186	16.8297
[a!!==========[aooooooa==========22a]dd	chr7:158166847-158167110(-)$1	263	114	153	21.8860
gg==========eeeeennnnneeeee333=========	chr2:240189194-240189481(-)$1	287	126	165	16.5191
!a[iiiiiiiii[eeeeemmmmeeeee]iiiiiiiii]a	chr12:121126709-121126970(+)$1	261	31	70	14.9858
!!dddd[iiiiiiiiiooooooiiiiiiiii]dddd333	chr16:89555338-89555566(-)$1	228	36	75	18.0681
!============"""annnnna333============4	chr3:126187246-126187500(-)$1	254	86	125	19.5842
diiiiiiiiiccc!!ammmma22ccc]iiiiiiiii]dd	chr3:47516244-47516486(-)$1	242	93	132	15.2878
b"""bbggggggg!!bboooooobb4444ggggggg]bb	chr1:91967034-91967280(+)$1	246	189	228	15.7520
c[ffffff####ddddoooooodddd333ffffffccc]	chr5:118805862-118806165(+)$1	303	203	242	13.3625
dddbb!!iiiiiiiiirrrrrrrrriiiiiiiiibb]dd	chr16:87475994-87476241(-)$1	247	90	129	15.0338
ddd[iiiiiiiii!!bbnnnnnbb22iiiiiiiiidddd	chr6:4794888-4795176(+)$1	288	7	46	15.7536
iiiiiii[a!!ccc[cccnnnnnccc]ccc4444aiiii	chr20:60634062-60634308(-)$1	246	163	202	14.2759
"""ddddiiiiiiiiillliiiiiiiii]dddd333ccc	chr21:46839232-46839539(+)$1	307	201	240	15.0258
[==========[bb[bboooooobb]bb333========	chr7:158371932-158372157(-)$1	225	32	71	18.6181
dd!!dddd[gggggggooooooggggggg]dddd]dddd	chr20:17606701-17606954(-)$1	253	15	54	14.6447
cc[dddd==========oooooo==========22dddd	chr10:34980108-34980378(-)$1	270	99	138	19.2465
ee"""eeeee==========lll==========22eeee	chr10:21989583-21989828(+)$1	245	103	142	15.6465
"""===========[bboooooobb===========333	chr11:129994854-129995100(+)$1	246	107	146	21.2215
======!!ccc"""bboooooobb22ccc]=========	chr10:115651533-115651817(+)$1	284	220	259	17.7876
[iiiiiiiii[bbccclllccc]bbiiiiiiiii]bb22	chr7:132652707-132652946(-)$1	239	110	149	14.5359
bb!!===========nnnnn===========]bb333dd	chr2:74251320-74251655(+)$1	335	249	288	17.0647
####ccc===========mmmm===========333ccc	chr3:30653998-30654254(+)$1	256	51	90	18.7103
eeeeeiiiiiiiii[abbmmmmbb]a]iiiiiiiii===	chrX:73452977-73453222(-)$1	245	104	143	15.3628
[dddd####iiiiiiiiiooooooiiiiiiiii22dddd	chr6:16433993-16434251(-)$1	258	18	57	16.5547
bddddiiiiiiiii[bbmmmmbbiiiiiiiii333dddd	chr16:67814665-67815069(-)$1	404	70	109	15.1806
"""eeeee[ccc[cccoooooocccccc]eeeee333cc	chr2:242620094-242620338(-)$1	244	160	199	15.4505
""iiiiiiiiiccc[bboooooobb]ccc]iiiiiiiii	chr6:57266257-57266495(+)$1	238	11	50	18.4901
ffff!!==========oooooo==========4444fff	chr1:8788094-8788347(-)$1	253	7	46	19.6010
hhhcccaccc[eeeeeooooooeeeee]ccc]a22ccc]	chr15:25303528-25303773(+)$1	245	196	235	13.7833
d==========bb!!ddddllldddd333bb]=======	chr8:141535352-141535596(-)$1	244	82	121	14.8594
c$$$$$ccc!!eeeeeooooooeeeeeccc4444cccbb	chr12:24043265-24043578(-)$1	313	212	251	13.3964
fffff[==========lll==========ffffffbb!!	chr2:240233971-240234232(-)$1	261	132	171	14.6451
cccggggggg"""cccmmmmccc333ggggggg22ccc]	chr9:97817780-97818035(+)$1	255	104	143	13.7697
iii"""bb$$$$$cccooooooccc333bbiiiiiiiii	chr13:99157290-99157548(-)$1	258	9	48	16.0355
""ggggggg[bb[cccooooooccc]bb]ggggggg444	chr12:50898802-50899051(+)$1	249	13	52	16.3099
gg!!a[ccc"""cccooooooccc4444ccc]a22gggg	chr3:128491378-128491629(+)$1	251	90	129	16.0028
[iiiiiiiii[ccc[bb[ccc!!iiiiiiiii[iiiiii	chr20:60723445-60723669(+)$1	224	51	90	14.5874
d[ccc[===========mmmm===========]ccc]dd	chr14:32215884-32216130(+)$1	246	66	105	17.6627
ggggggg!!dddd[bboooooobb]dddd22gggggggb	chr3:196964627-196964857(-)$1	230	181	220	13.4874
=========gggggggooooooggggggg4444======	chr17:77952931-77953235(-)$1	304	136	175	18.8026
bb"""iiiiiiiiiqqqqqqqqiiiiiiiii333bb]ee	chr8:6283182-6283472(+)$1	290	90	129	13.9365
$$$$a[==========oooooo==========]acccdd	chr1:162167096-162167401(+)$1	305	106	145	20.1647
iiiiiiii####ddddrrrrrrrrrdddd]iiiiiiiii	chr9:134270617-134270850(+)$1	233	23	62	14.2703

#otherMatches

#Seq PSSM
GGCGGCUGUAUCUGGAAGUCCUUUCCCGCCCCAGCUGUG	chr16:2643184-2643493(+)$1	309	161	200	13.9101
CUGCAGUGGGGGAGAAUGUGCUUUUUCUCUCUCUGCACA	chr6:3748789-3749049(-)$1	260	208	247	16.5800
CAUUUCAGUCAUCACAUGAUUUUUGUGAUGGCUGUGGUG	chr19:19534192-19534496(+)$1	304	12	51	15.1111
UAGAGUGUGUCUUGGAAACAUGCCCCUGGGCACACUGUA	chr12:121159738-121160010(+)$1	272	140	179	15.9773
guugggugaggccacuggcagggauguggucucauuguc	chr9:34198443-34198731(+)$1	288	147	186	16.8297
AGUUCCAUUUCCAGUGGUCUGUCCUGGAGGUGGCUCCCU	chr7:158166847-158167110(-)$1	263	114	153	21.8860
CUGUGGAGCCCUCCAGGUCUGCCUUGGCUCAGGGCUCCG	chr2:240189194-240189481(-)$1	287	126	165	16.5191
CCCUUCCUCUUUCUUCACGAGUGUGGGCAGGGAGGAAAG	chr12:121126709-121126970(+)$1	261	31	70	14.9858
UCGGGGGGAGUCUUGAUUUUUCUCGAGGCUUGCUCUUUU	chr16:89555338-89555566(-)$1	228	36	75	18.0681
GUUUCUUCCAGCAAGUCUAGGUGUUGUGCUGGGAGAGAA	chr3:126187246-126187500(-)$1	254	86	125	19.5842
UGACGCUUUUAUUAGGGAGUCAGGGUCGAGGGUGUCUAG	chr3:47516244-47516486(-)$1	242	93	132	15.2878
CCUGUGGAUGUAACCCCUUAGCUGGCAUUUUGCAUCUCA	chr1:91967034-91967280(+)$1	246	189	228	15.7520
gcacaccagcagugguuccauuaccaaaauggugucaua	chr5:118805862-118806165(+)$1	303	203	242	13.3625
cuggauuugugcaggcuuucugucugucugugcaucuca	chr16:87475994-87476241(-)$1	247	90	129	15.0338
GAGCAUGGGGUGCAUGUCCCUUACUCGUAUCUCGucucu	chr6:4794888-4795176(+)$1	288	7	46	15.7536
GCGUGUGAGGGCAGGAGAAAUUGUUUGUUGGGAGCCGCA	chr20:60634062-60634308(-)$1	246	163	202	14.2759
GUGGGAGCUGGGCUGCAAAGUGGCCUGGACUUUAUGUCC	chr21:46839232-46839539(+)$1	307	201	240	15.0258
UUGGUAACCACAGAGUUUCUGAUAAGUCAUAGUGGUUGU	chr7:158371932-158372157(-)$1	225	32	71	18.6181
CUCUUGUGUUUUAAGAUCAGAUUCUUGGGCCACACAGCA	chr20:17606701-17606954(-)$1	253	15	54	14.6447
uguggcuauugggaaugggauuguguuucugauuuggcu	chr10:34980108-34980378(-)$1	270	99	138	19.2465
gauuuuugcauugauguuucuuggggauauugaccugua	chr10:21989583-21989828(+)$1	245	103	142	15.6465
GUUCUUGUGGGGCCUCUGCCUGGAGGGCUUUGCAGGUUG	chr11:129994854-129995100(+)$1	246	107	146	21.2215
CCACAGCUGUAAAUGGUAUUUUCCUGUGCUCUGUGGAAA	chr10:115651533-115651817(+)$1	284	220	259	17.7876
GAGUAGCAGGGCAGCUUUAGGUAUGUUUGCUACUGCAGU	chr7:132652707-132652946(-)$1	239	110	149	14.5359
UGCCUCUUCAGGCUGUUGCCCAGCCUGGAGACCAUCCAG	chr2:74251320-74251655(+)$1	335	249	288	17.0647
AUAAGGCAGAGUUUCUUUGCAUAAGGAAACUCUACAGCC	chr3:30653998-30654254(+)$1	256	51	90	18.7103
GGGAUAUUAAUACAGUACCCUAGUCAGUGUGUUAGUGAG	chrX:73452977-73453222(-)$1	245	104	143	15.3628
UUGGGCACAUUGAAUUAUGAGAUAAUAGUUUGGCAUCCA	chr6:16433993-16434251(-)$1	258	18	57	16.5547
UGGCUGCUUUGGGGGCUCUCCAGCCUCAAGGUAAUAGCU	chr16:67814665-67815069(-)$1	404	70	109	15.1806
UAAAAGUAAGGUUACAAAUCACUGUGCUGUACUUGUUGU	chr2:242620094-242620338(-)$1	244	160	199	15.4505
uuuguggcucccuuauauuuccuuacagguggagccaug	chr6:57266257-57266495(+)$1	238	11	50	18.4901
AGUUAUUAGGUUAGAGGAAUGAUUUUAAUUUACUUGGAU	chr1:8788094-8788347(-)$1	253	7	46	19.6010
CGCCCUCCAGUGCUGGUUGUGUUUGGUUUUGUGCCAGGU	chr15:25303528-25303773(+)$1	245	196	235	13.7833
UGCCGGCCCAGGGUACAGGCUGCUUGGGUCCGCUGGGCU	chr8:141535352-141535596(-)$1	244	82	121	14.8594
aucaguugucauuuuuuuaaauaaaaagcauauuuuauc	chr12:24043265-24043578(-)$1	313	212	251	13.3964
CAUGGAUGGUGGUGCUGGCAGCACCACCACCGUGCAGUU	chr2:240233971-240234232(-)$1	261	132	171	14.6451
CCUGUGGACUGAAGGGGCAACCUGAGGGUCUGCUAAGGU	chr9:97817780-97818035(+)$1	255	104	143	13.7697
AGUGGAUCUACAGCUCUUUUUUGAGAAUGAAUUGCUAUU	chr13:99157290-99157548(-)$1	258	9	48	16.0355
GUGCUCGGCGGCCGGAGCCGGAUCCUGUAGCCGGGUGUG	chr12:50898802-50899051(+)$1	249	13	52	16.3099
AAAAUGAACUUGUGCCCUUUCGCAAAUUGUUGGACUUGU	chr3:128491378-128491629(+)$1	251	90	129	16.0028
UGGCCUCCUUGCUGUCUUAGGUGAGGGAGGCUUGGCCUC	chr20:60723445-60723669(+)$1	224	51	90	14.5874
uacuuugagaggaauugguguuaguucuucuuuaagagu	chr14:32215884-32216130(+)$1	246	66	105	17.6627
gugacaguauguagaaguaggguugugcaccuuguuacu	chr3:196964627-196964857(-)$1	230	181	220	13.4874
UGUGCGUCCCCGGAGCGCGUGUGCUCUGGGCGUGGGUGU	chr17:77952931-77953235(-)$1	304	136	175	18.8026
ccucgguuuucuguguugugcaauaggaggcaaugguag	chr8:6283182-6283472(+)$1	290	90	129	13.9365
GGUUCUUGGCAGCCGGGAUGUACUGGCUGCUAUGUUGUC	chr1:162167096-162167401(+)$1	305	106	145	20.1647
UAAACUUUCCCUAAGAUUUUUUUUUUCUUUAAGGUUUAG	chr9:134270617-134270850(+)$1	233	23	62	14.2703

#DB
.(((((((...(.((((.....)))).)...))))))).	chr16:2643184-2643493(+)$1	1	161	200	13.9101
.(((((.(((((((((......))))))))).)))))((	chr6:3748789-3749049(-)$1	1	208	247	16.5800
((((.(((((((((((.......))))))))))).))))	chr19:19534192-19534496(+)$1	1	12	51	15.1111
((.(((((((((.((.........)).))))))))).))	chr12:121159738-121160010(+)$1	1	140	179	15.9773
(...(((((((((((..........))))))))))).))	chr9:34198443-34198731(+)$1	1	147	186	16.8297
.(..((((((((((.(......)))))))))))..).))	chr7:158166847-158167110(-)$1	1	114	153	21.8860
))(((((((((((((((.....)))))...)))))))))	chr2:240189194-240189481(-)$1	1	126	165	16.5191
.(.(((((((((.(((((....))))).))))))))).)	chr12:121126709-121126970(+)$1	1	31	70	14.9858
..((((.(((((((((......))))))))).))))...	chr16:89555338-89555566(-)$1	1	36	75	18.0681
.((((((((((((...(.....)...)))))))))))).	chr3:126187246-126187500(-)$1	1	86	125	19.5842
(((((((((((((..(....)..))).))))))))).))	chr3:47516244-47516486(-)$1	1	93	132	15.2878
(...(((((((((..((......))....))))))).))	chr1:91967034-91967280(+)$1	1	189	228	15.7520
(.((((((....((((......))))...))))))))).	chr5:118805862-118806165(+)$1	1	203	242	13.3625
(((((..(((((((((.........))))))))))).))	chr16:87475994-87476241(-)$1	1	90	129	15.0338
(((.(((((((((..((.....))..)))))))))))))	chr6:4794888-4795176(+)$1	1	7	46	15.7536
(((((((.(..(((.(((.....))).)))....)))))	chr20:60634062-60634308(-)$1	1	163	202	14.2759
...(((((((((((((...))))))))).))))...)))	chr21:46839232-46839539(+)$1	1	201	240	15.0258
.((((((((((.((.((......)).))...))))))))	chr7:158371932-158372157(-)$1	1	32	71	18.6181
((..((((.(((((((......))))))).)))).))))	chr20:17606701-17606954(-)$1	1	15	54	14.6447
((.((((((((((((((......))))))))))..))))	chr10:34980108-34980378(-)$1	1	99	138	19.2465
((...(((((((((((((((...))))))))))..))))	chr10:21989583-21989828(+)$1	1	103	142	15.6465
...(((((((((((.((......)))))))))))))...	chr11:129994854-129995100(+)$1	1	107	146	21.2215
((((((..(((...((......))..))).)))))))))	chr10:115651533-115651817(+)$1	1	220	259	17.7876
.(((((((((.(((((...))).))))))))))).))..	chr7:132652707-132652946(-)$1	1	110	149	14.5359
((..(((((((((((.....))))))))))).))...))	chr2:74251320-74251655(+)$1	1	249	288	17.0647
....((((((((((((((....)))))))))))...)))	chr3:30653998-30654254(+)$1	1	51	90	18.7103
)))))(((((((((.(((....)).).)))))))))(((	chrX:73452977-73453222(-)$1	1	104	143	15.3628
.((((....(((((((((......)))))))))..))))	chr6:16433993-16434251(-)$1	1	18	57	16.5547
((((((((((((((.((....)))))))))))...))))	chr16:67814665-67815069(-)$1	1	70	109	15.1806
...(((((.(((.(((......)))))).)))))...))	chr2:242620094-242620338(-)$1	1	160	199	15.4505
..((((((((((((.((......)).))).)))))))))	chr6:57266257-57266495(+)$1	1	11	50	18.4901
((((..((((((((((......))))))))))....)))	chr1:8788094-8788347(-)$1	1	7	46	19.6010
((((((((((.(((((......))))).))).)..))).	chr15:25303528-25303773(+)$1	1	196	235	13.7833
)((((((((((((..((((...))))...)).)))))))	chr8:141535352-141535596(-)$1	1	82	121	14.8594
(.....(((..(((((......))))))))....)))))	chr12:24043265-24043578(-)$1	1	212	251	13.3964
(((((.((((((((((...))))))))))))))))((..	chr2:240233971-240234232(-)$1	1	132	171	14.6451
((((((((((...(((....)))...)))))))..))).	chr9:97817780-97818035(+)$1	1	104	143	13.7697
(((...((.....(((......)))...)))))))))))	chr13:99157290-99157548(-)$1	1	9	48	16.0355
..(((((((.((.(((......))).)).)))))))...	chr12:50898802-50899051(+)$1	1	13	52	16.3099
((..(.(((...(((......)))....))).)..))))	chr3:128491378-128491629(+)$1	1	90	129	16.0028
.(((((((((.(((.((.(((..(((((((((.((((((	chr20:60723445-60723669(+)$1	1	51	90	14.5874
(.(((.(((((((((((....))))))))))).))).))	chr14:32215884-32216130(+)$1	1	66	105	17.6627
(((((((..((((.((......)).))))..))))))))	chr3:196964627-196964857(-)$1	1	181	220	13.4874
((((((((((((((((......)))))))....))))))	chr17:77952931-77953235(-)$1	1	136	175	18.8026
((...(((((((((........)))))))))...)).))	chr8:6283182-6283472(+)$1	1	90	129	13.9365
....(.((((((((((......)))))))))).))))))	chr1:162167096-162167401(+)$1	1	106	145	20.1647
((((((((....((((.........)))).)))))))))	chr9:134270617-134270850(+)$1	1	23	62	14.2703

#PSSM
[ : 0.12	c : 0.12	d : 0.12	" : 0.10	b : 0.08	e : 0.06	g : 0.06	! : 0.06	i : 0.06	= : 0.04	f : 0.04	: : 0.02	# : 0.02	h : 0.02	$ : 0.02	
" : 0.14	i : 0.12	= : 0.10	d : 0.10	g : 0.08	e : 0.08	c : 0.06	a : 0.04	[ : 0.04	b : 0.04	f : 0.04	$ : 0.04	! : 0.02	# : 0.02	h : 0.02	
" : 0.14	i : 0.14	= : 0.12	d : 0.10	! : 0.08	g : 0.06	e : 0.06	[ : 0.06	f : 0.06	$ : 0.04	c : 0.04	# : 0.02	h : 0.02	
i : 0.17	= : 0.14	" : 0.10	d : 0.10	g : 0.08	e : 0.08	! : 0.08	f : 0.06	c : 0.04	$ : 0.04	b : 0.02	[ : 0.02	# : 0.02	
= : 0.21	i : 0.19	d : 0.12	g : 0.08	e : 0.06	" : 0.06	c : 0.06	b : 0.04	f : 0.04	a : 0.04	[ : 0.02	! : 0.02	$ : 0.02	
i : 0.25	= : 0.23	g : 0.08	d : 0.08	[ : 0.08	e : 0.06	! : 0.04	c : 0.04	b : 0.02	f : 0.02	# : 0.02	$ : 0.02	" : 0.02	
= : 0.29	i : 0.25	g : 0.10	d : 0.06	c : 0.06	[ : 0.04	! : 0.04	e : 0.04	f : 0.02	# : 0.02	a : 0.02	b : 0.02	
= : 0.34	i : 0.31	g : 0.08	c : 0.06	e : 0.04	! : 0.04	f : 0.02	[ : 0.02	d : 0.02	# : 0.02	b : 0.02	
= : 0.34	i : 0.29	c : 0.08	g : 0.06	# : 0.06	[ : 0.04	" : 0.02	a : 0.02	e : 0.02	$ : 0.02	! : 0.02	
i : 0.31	= : 0.31	g : 0.08	c : 0.06	" : 0.04	# : 0.04	! : 0.04	e : 0.02	$ : 0.02	[ : 0.02	d : 0.02	
= : 0.34	i : 0.25	" : 0.06	c : 0.06	g : 0.06	[ : 0.06	# : 0.04	! : 0.04	$ : 0.02	b : 0.02	d : 0.02	
= : 0.29	i : 0.23	c : 0.10	g : 0.06	" : 0.06	b : 0.06	# : 0.04	e : 0.04	a : 0.02	[ : 0.02	$ : 0.02	d : 0.02	
= : 0.27	i : 0.19	[ : 0.10	c : 0.10	e : 0.06	g : 0.06	d : 0.06	b : 0.06	" : 0.04	$ : 0.02	
= : 0.25	c : 0.19	i : 0.17	e : 0.08	! : 0.08	d : 0.06	b : 0.04	" : 0.04	g : 0.04	[ : 0.02	
= : 0.21	[ : 0.17	c : 0.12	i : 0.10	e : 0.08	! : 0.08	d : 0.06	b : 0.06	g : 0.04	" : 0.02	q : 0.02	
b : 0.19	= : 0.17	c : 0.12	i : 0.10	d : 0.08	e : 0.08	a : 0.06	g : 0.04	r : 0.02	s : 0.02	" : 0.02	n : 0.02	o : 0.02	q : 0.02	
o : 0.34	b : 0.17	= : 0.08	r : 0.06	l : 0.06	d : 0.04	e : 0.04	m : 0.04	p : 0.02	s : 0.02	a : 0.02	c : 0.02	n : 0.02	i : 0.02	q : 0.02	
o : 0.44	n : 0.10	m : 0.08	r : 0.06	l : 0.06	= : 0.04	p : 0.02	s : 0.02	e : 0.02	c : 0.02	b : 0.02	i : 0.02	d : 0.02	[ : 0.02	q : 0.02	
o : 0.46	m : 0.14	n : 0.12	r : 0.06	l : 0.06	p : 0.02	s : 0.02	= : 0.02	d : 0.02	c : 0.02	q : 0.02	
o : 0.46	m : 0.14	n : 0.12	r : 0.06	= : 0.04	c : 0.04	p : 0.02	s : 0.02	i : 0.02	l : 0.02	q : 0.02	
o : 0.46	n : 0.10	m : 0.10	r : 0.06	c : 0.06	l : 0.04	= : 0.04	p : 0.02	s : 0.02	a : 0.02	i : 0.02	q : 0.02	
o : 0.44	n : 0.10	r : 0.06	m : 0.06	c : 0.06	= : 0.06	l : 0.04	p : 0.02	s : 0.02	2 : 0.02	i : 0.02	b : 0.02	! : 0.02	q : 0.02	
o : 0.12	= : 0.12	b : 0.10	c : 0.10	i : 0.08	e : 0.08	d : 0.06	r : 0.06	a : 0.04	g : 0.04	p : 0.02	s : 0.02	2 : 0.02	n : 0.02	l : 0.02	] : 0.02	! : 0.02	
= : 0.21	b : 0.19	i : 0.12	c : 0.12	e : 0.08	d : 0.06	r : 0.06	3 : 0.04	g : 0.04	s : 0.02	o : 0.02	
= : 0.21	i : 0.14	b : 0.12	c : 0.10	e : 0.08	d : 0.06	3 : 0.04	r : 0.04	2 : 0.04	g : 0.04	] : 0.04	s : 0.02	4 : 0.02	
= : 0.25	i : 0.19	d : 0.10	e : 0.08	3 : 0.06	c : 0.06	] : 0.06	4 : 0.04	2 : 0.04	g : 0.04	b : 0.02	a : 0.02	
= : 0.27	i : 0.21	] : 0.10	e : 0.08	3 : 0.06	g : 0.06	c : 0.06	4 : 0.04	b : 0.04	d : 0.04	
i : 0.27	= : 0.27	c : 0.10	3 : 0.08	g : 0.06	] : 0.04	4 : 0.04	b : 0.04	d : 0.04	a : 0.02	
i : 0.27	= : 0.27	c : 0.12	3 : 0.10	] : 0.06	g : 0.06	d : 0.04	4 : 0.02	b : 0.02	
i : 0.27	= : 0.25	c : 0.08	] : 0.08	3 : 0.06	g : 0.06	f : 0.04	b : 0.04	d : 0.02	e : 0.02	2 : 0.02	4 : 0.02	
i : 0.34	= : 0.29	g : 0.06	4 : 0.06	3 : 0.04	f : 0.04	d : 0.04	c : 0.04	e : 0.02	b : 0.02	2 : 0.02	
= : 0.29	i : 0.27	] : 0.12	g : 0.10	4 : 0.06	f : 0.04	d : 0.04	e : 0.02	3 : 0.02	
= : 0.25	i : 0.23	g : 0.10	4 : 0.08	d : 0.06	e : 0.04	f : 0.04	3 : 0.04	a : 0.04	] : 0.04	b : 0.02	[ : 0.02	
i : 0.23	= : 0.19	2 : 0.14	g : 0.08	3 : 0.08	4 : 0.06	e : 0.04	d : 0.04	f : 0.04	b : 0.02	c : 0.02	a : 0.02	
i : 0.19	= : 0.17	2 : 0.14	3 : 0.10	g : 0.08	] : 0.06	c : 0.06	f : 0.04	b : 0.04	e : 0.02	d : 0.02	a : 0.02	4 : 0.02	
i : 0.19	= : 0.17	d : 0.12	c : 0.12	g : 0.10	b : 0.08	3 : 0.08	e : 0.06	a : 0.02	4 : 0.02	
] : 0.17	= : 0.14	c : 0.14	i : 0.12	d : 0.10	3 : 0.08	g : 0.06	e : 0.06	b : 0.04	f : 0.02	4 : 0.02	
d : 0.25	c : 0.17	= : 0.14	i : 0.10	g : 0.06	e : 0.06	3 : 0.04	b : 0.04	] : 0.02	2 : 0.02	f : 0.02	! : 0.02	4 : 0.02	
d : 0.25	= : 0.12	c : 0.10	i : 0.10	] : 0.08	e : 0.06	b : 0.06	3 : 0.04	4 : 0.04	a : 0.02	2 : 0.02	f : 0.02	! : 0.02	g : 0.02	

#score	763.7744226895592
#seq	47
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_transcript_m3_run2.txt

#BEAR
====[cccpppppppccc]===	chr20:462915-463170(-)$1	255	77	99	15.4602
F:ccccccpppppppccc]ccc	chr16:68160250-68160531(+)$1	281	246	268	13.3121
bb[eeeeepppppppeeeee]b	chrX:77381483-77381726(+)$1	243	121	143	14.8549
bb!!ddddpppppppdddd444	chr8:101730010-101730215(-)$1	205	98	120	15.3172
ffff!!bbpppppppbb22fff	chr5:6599662-6599936(-)$1	274	158	180	13.4439
eeeeecccpppppppccc]eee	chr11:14526348-14526649(-)$1	301	102	124	14.9522
'''eeeeepppppppeeeeegg	chr5:10264923-10265191(+)$1	268	80	102	13.6524
========ppppppp=======	chr12:63359046-63359317(+)$1	271	150	172	15.2799
eee[ddddpppppppddddeee	chr17:8062936-8063212(-)$1	276	178	200	15.2703
###ddddrrrrrrrrrddddee	chr17:39847080-39847347(+)$1	267	188	210	11.3103
gggbb[bbpppppppbb]bb]g	chr7:105891341-105891587(-)$1	246	211	233	13.1833
bgggggggpppppppggggggg	chr6:133136357-133136577(+)$1	220	120	142	14.8126
c[ffffffpppppppffffff]	chr5:70952893-70953226(+)$1	333	4	26	13.4258
eeeeeebbpppppppbb]eeee	chr6:26124362-26124599(+)$1	237	163	185	14.3017
bb[eeeeepppppppeeeee]b	chr6:52129103-52129385(-)$1	282	228	250	14.8549
dd####bbpppppppbb333dd	chr3:58157617-58157916(+)$1	299	71	93	13.6624
eeeeecccpppppppccc]eee	chr9:140006590-140006857(-)$1	267	233	255	14.9522
###eeeeepppppppeeeee44	chr15:90815167-90815431(+)$1	264	32	54	15.3760
eee[ddddpppppppdddd]ee	chr5:34190054-34190288(-)$1	234	6	28	15.2770
gggggggapppppppa]ggggg	chr16:89629409-89629652(+)$1	243	200	222	14.9040
:gggggggpppppppggggggg	chr10:99218108-99218372(-)$1	264	113	135	14.0909
#gggggggpppppppggggggg	chr6:31805017-31805291(+)$1	274	161	183	14.9627
i!!eeeeepppppppeeeee22	chr2:55461882-55462093(+)$1	211	50	72	15.2127
gggg!!bbpppppppbb333gg	chr4:83275005-83275226(-)$1	221	74	96	14.7453
b[ccccccpppppppccc]ccc	chr16:88955885-88956122(-)$1	237	157	179	14.6890
bgggggggpppppppggggggg	chr10:126370528-126370895(-)$1	367	178	200	14.8126
ccc[ddddpppppppdddd22c	chr7:97481391-97481689(-)$1	298	136	158	15.2189
ccceeeeepppppppeeeee::	chr13:114561051-114561325(-)$1	274	185	207	13.0545
dddd!!bbpppppppbb22ddd	chr2:63834132-63834411(+)$1	279	195	217	13.1149
ee[eeeeepppppppeeeee]e	chr18:43666031-43666296(-)$1	265	87	109	15.3745
:gggggggpppppppggggggg	chr17:62496127-62496403(-)$1	276	20	42	14.0909
gggg[cccpppppppccc]ggg	chr22:50034461-50034760(-)$1	299	232	254	15.3107
b[bb[cccpppppppcccbb]b	chr16:88953890-88954131(-)$1	241	176	198	13.5267
ee[ddddrrrrrrrrrdddd]e	chr9:101992675-101992942(+)$1	267	155	177	11.4289
gg[eeeeepppppppeeeeegg	chr22:50011776-50012027(-)$1	251	219	241	15.4337
###ddddrrrrrrrrrdddd44	chr2:198256675-198256990(-)$1	315	103	125	11.4304
[gggggggpppppppggggggg	chr1:156278756-156279025(-)$1	269	242	264	14.9486
dd[eeeeepppppppeeeee]d	chr16:89629586-89629817(+)$1	231	127	149	15.0650
iii!!cccpppppppccc22ii	chr22:49957873-49958124(-)$1	251	178	200	15.0533
ccc[ddddpppppppddddccc	chr11:116649432-116649686(-)$1	254	73	95	15.1994
g"""ddddpppppppdddd000	chr11:18428875-18429098(+)$1	223	34	56	14.3401
f"""ddddpppppppdddd22f	chr1:155882804-155883047(-)$1	243	153	175	15.2853
fff[ddddpppppppdddd]ff	chr7:6443394-6443669(+)$1	275	179	201	15.0883
eeeeecccpppppppccc]eee	chr12:54677500-54677722(+)$1	222	126	148	14.9522
!!a[ddddpppppppdddd]a2	chr11:118963987-118964296(+)$1	309	264	286	15.4930
adddd[bbpppppppbb]dddd	chr20:33590676-33590935(-)$1	259	170	192	13.5986
eeeeee[apppppppa]eeeee	chr5:34182774-34183036(-)$1	262	233	255	14.5758
cc[ddddrrrrrrrrrdddd]c	chr8:101932505-101932773(-)$1	268	29	51	11.4870
cgggggggpppppppggggggg	chr2:55460416-55460654(+)$1	238	191	213	14.9203
eeee!!bbpppppppbb22eee	chr18:43664051-43664342(-)$1	291	263	285	13.9574
fff[ddddpppppppdddd]ff	chr7:135333155-135333470(+)$1	315	209	231	15.0883
##a[ddddpppppppdddd]ah	chr16:89032477-89032740(-)$1	263	34	56	15.4374
'''eeeeepppppppeeeee77	chr22:50039605-50039858(-)$1	253	85	107	12.4968
e!!ddddrrrrrrrrrdddd33	chr17:47788326-47788588(-)$1	262	186	208	11.6770
cc!!ddddpppppppdddd22c	chr3:128996360-128996566(+)$1	206	165	187	15.4666
ggggggbbpppppppbb]gggg	chr5:177310840-177311133(+)$1	293	193	215	14.5603
c[a[ddddpppppppdddda]c	chr17:76117704-76117949(-)$1	245	218	240	15.7251

#otherMatches

#Seq PSSM
UUGGGGAUGGAAAAAGUCGCCA	chr20:462915-463170(-)$1	255	77	99	15.4602
GACAUCCUGUUGUGAAGGUAUG	chr16:68160250-68160531(+)$1	281	246	268	13.3121
AAGUGAGCAGUGUUAGCUUAGU	chrX:77381483-77381726(+)$1	243	121	143	14.8549
GGUGGUUUGUGAUGAAAAUGGU	chr8:101730010-101730215(-)$1	205	98	120	15.3172
UUUGCUGGGAAUAGACUUUCAA	chr5:6599662-6599936(-)$1	274	158	180	13.4439
GAAAGGGUCUGUAUAAUCAUUU	chr11:14526348-14526649(-)$1	301	102	124	14.9522
GAUGCUAUAAUAAAAAUAGCUG	chr5:10264923-10265191(+)$1	268	80	102	13.6524
UGAUCAGAACAGGGCUUUGGUC	chr12:63359046-63359317(+)$1	271	150	172	15.2799
CAGAGAAUCCCCCCAAUUCCUG	chr17:8062936-8063212(-)$1	276	178	200	15.2703
GUCCCUCAUUUAAACAGAGGUC	chr17:39847080-39847347(+)$1	267	188	210	11.3103
GUGAUCUCAAAUUAGGAAAUGC	chr7:105891341-105891587(-)$1	246	211	233	13.1833
CUUCACUCCUUUUAUGAGUGAA	chr6:133136357-133136577(+)$1	220	120	142	14.8126
caguuuuaccacccauaaagcg	chr5:70952893-70953226(+)$1	333	4	26	13.4258
UGGUCUCCAGUUCCCGGUGGGC	chr6:26124362-26124599(+)$1	237	163	185	14.3017
CUAUUGCAUCUUCAUUGCAAAA	chr6:52129103-52129385(-)$1	282	228	250	14.8549
GUUAAAGUGUCAGGGACGUUGC	chr3:58157617-58157916(+)$1	299	71	93	13.6624
CAGCUGUGCUGACCCCACUGGC	chr9:140006590-140006857(-)$1	267	233	255	14.9522
CCAGUCUGACCUCUGUAGACCU	chr15:90815167-90815431(+)$1	264	32	54	15.3760
GGUCCUUGUCCUGCUCAGGCAU	chr5:34190054-34190288(-)$1	234	6	28	15.2770
UGCUUUACUUUCUGUGUUGAAG	chr16:89629409-89629652(+)$1	243	200	222	14.9040
AUAAGUGUGUGUGAGACACUUG	chr10:99218108-99218372(-)$1	264	113	135	14.0909
UGGAGAGCCAUGCCUGUUCUCC	chr6:31805017-31805291(+)$1	274	161	183	14.9627
AUCAUGAAAGCUUGCUUCAUUC	chr2:55461882-55462093(+)$1	211	50	72	15.2127
AAAUUUGCUUUCAUUGUUUUAU	chr4:83275005-83275226(-)$1	221	74	96	14.7453
gcgccagggcucaaaccuaggu	chr16:88955885-88956122(-)$1	237	157	179	14.6890
AGAUGUCCAGUUGCCGGACAUC	chr10:126370528-126370895(-)$1	367	178	200	14.8126
AUGUGAAAGCAAAUAUUUCUUC	chr7:97481391-97481689(-)$1	298	136	158	15.2189
GGGGUCAGAAGACCACUGACAG	chr13:114561051-114561325(-)$1	274	185	207	13.0545
GAAAGUGACUCAGACUCUGUUU	chr2:63834132-63834411(+)$1	279	195	217	13.1149
GAAGCUGGAAUUGGCUCAGUAU	chr18:43666031-43666296(-)$1	265	87	109	15.3745
AAGGGGUGGAUUUAAUACCUUU	chr17:62496127-62496403(-)$1	276	20	42	14.0909
GGAGGAGCUUGCGAUGCUGCUC	chr22:50034461-50034760(-)$1	299	232	254	15.3107
GAGCCUGCCCCACACGCAGCCC	chr16:88953890-88954131(-)$1	241	176	198	13.5267
UUAUCAAUAAUUGAUUUUGAGG	chr9:101992675-101992942(+)$1	267	155	177	11.4289
UGUGGGCUGAGAAGGGGCUCCG	chr22:50011776-50012027(-)$1	251	219	241	15.4337
UUUUAAAUAACCUGUCUUUGUU	chr2:198256675-198256990(-)$1	315	103	125	11.4304
CGAUGAUUAAAUCUAAGUCAUU	chr1:156278756-156279025(-)$1	269	242	264	14.9486
guguuuuuucuuuuuaaagagg	chr16:89629586-89629817(+)$1	231	127	149	15.0650
UUUGGCAAAACUGAGUUGGGAG	chr22:49957873-49958124(-)$1	251	178	200	15.0533
AGCGCUGCUCUUUCUGUAGGUU	chr11:116649432-116649686(-)$1	254	73	95	15.1994
UGAUCUGUGAUUAAAGCAGUAA	chr11:18428875-18429098(+)$1	223	34	56	14.3401
UCCUAUAUGUUGUAAAUAUUUA	chr1:155882804-155883047(-)$1	243	153	175	15.2853
UGACUUAAUAAAUCCUUGAAUC	chr7:6443394-6443669(+)$1	275	179	201	15.0883
UGAUUUUGGGAAUUACAACAAU	chr12:54677500-54677722(+)$1	222	126	148	14.9522
GAAGGUGUUGUGUGUGCGCGUG	chr11:118963987-118964296(+)$1	309	264	286	15.4930
CAUGGAGAGCCUCAGUCCCCAU	chr20:33590676-33590935(-)$1	259	170	192	13.5986
CUACCUGUACUCGUGGGAGGUA	chr5:34182774-34183036(-)$1	262	233	255	14.5758
AGUUAACAUUUAGGGAGUUAUC	chr8:101932505-101932773(-)$1	268	29	51	11.4870
UGUAGGUGCUAGACAUACCUGC	chr2:55460416-55460654(+)$1	238	191	213	14.9203
CCAAGAUCAAAUUGAGAAAUUG	chr18:43664051-43664342(-)$1	291	263	285	13.9574
UAGAUUAGUUUCUUUCUAAAUU	chr7:135333155-135333470(+)$1	315	209	231	15.0883
AUGGCAGCCCUGUUAGCUGGCU	chr16:89032477-89032740(-)$1	263	34	56	15.4374
AUAAAUAUUCCUAAUGUAUUCC	chr22:50039605-50039858(-)$1	253	85	107	12.4968
GCUCACAAUUCACACCUGUGUA	chr17:47788326-47788588(-)$1	262	186	208	11.6770
UGUAAAUGAAUAAAACAUUCUC	chr3:128996360-128996566(+)$1	206	165	187	15.4666
CUCGCGUGGACUCUGCAGUGCG	chr5:177310840-177311133(+)$1	293	193	215	14.5603
AGGCGGCUGUGCUGGGGCUUGU	chr17:76117704-76117949(-)$1	245	218	240	15.7251

#DB
((((.(((.......))).)))	chr20:462915-463170(-)$1	1	77	99	15.4602
).((((((.......))).)))	chr16:68160250-68160531(+)$1	1	246	268	13.3121
((.(((((.......))))).)	chrX:77381483-77381726(+)$1	1	121	143	14.8549
((..((((.......))))...	chr8:101730010-101730215(-)$1	1	98	120	15.3172
((((..((.......))..)))	chr5:6599662-6599936(-)$1	1	158	180	13.4439
((((((((.......))).)))	chr11:14526348-14526649(-)$1	1	102	124	14.9522
...(((((.......)))))))	chr5:10264923-10265191(+)$1	1	80	102	13.6524
((((((((.......)))))))	chr12:63359046-63359317(+)$1	1	150	172	15.2799
(((.((((.......)))))))	chr17:8062936-8063212(-)$1	1	178	200	15.2703
...((((.........))))))	chr17:39847080-39847347(+)$1	1	188	210	11.3103
(((((.((.......)).)).)	chr7:105891341-105891587(-)$1	1	211	233	13.1833
)(((((((.......)))))))	chr6:133136357-133136577(+)$1	1	120	142	14.8126
(.((((((.......)))))).	chr5:70952893-70953226(+)$1	1	4	26	13.4258
((((((((.......)).))))	chr6:26124362-26124599(+)$1	1	163	185	14.3017
((.(((((.......))))).)	chr6:52129103-52129385(-)$1	1	228	250	14.8549
((....((.......))...))	chr3:58157617-58157916(+)$1	1	71	93	13.6624
((((((((.......))).)))	chr9:140006590-140006857(-)$1	1	233	255	14.9522
...(((((.......)))))..	chr15:90815167-90815431(+)$1	1	32	54	15.3760
(((.((((.......)))).))	chr5:34190054-34190288(-)$1	1	6	28	15.2770
((((((((.......).)))))	chr16:89629409-89629652(+)$1	1	200	222	14.9040
.(((((((.......)))))))	chr10:99218108-99218372(-)$1	1	113	135	14.0909
.(((((((.......)))))))	chr6:31805017-31805291(+)$1	1	161	183	14.9627
(..(((((.......)))))..	chr2:55461882-55462093(+)$1	1	50	72	15.2127
((((..((.......))...))	chr4:83275005-83275226(-)$1	1	74	96	14.7453
(.((((((.......))).)))	chr16:88955885-88956122(-)$1	1	157	179	14.6890
)(((((((.......)))))))	chr10:126370528-126370895(-)$1	1	178	200	14.8126
(((.((((.......))))..)	chr7:97481391-97481689(-)$1	1	136	158	15.2189
)))(((((.......)))))..	chr13:114561051-114561325(-)$1	1	185	207	13.0545
((((..((.......))..)))	chr2:63834132-63834411(+)$1	1	195	217	13.1149
((.(((((.......))))).)	chr18:43666031-43666296(-)$1	1	87	109	15.3745
.(((((((.......)))))))	chr17:62496127-62496403(-)$1	1	20	42	14.0909
((((.(((.......))).)))	chr22:50034461-50034760(-)$1	1	232	254	15.3107
(.((.(((.......))))).)	chr16:88953890-88954131(-)$1	1	176	198	13.5267
((.((((.........)))).)	chr9:101992675-101992942(+)$1	1	155	177	11.4289
((.(((((.......)))))))	chr22:50011776-50012027(-)$1	1	219	241	15.4337
...((((.........))))..	chr2:198256675-198256990(-)$1	1	103	125	11.4304
.(((((((.......)))))))	chr1:156278756-156279025(-)$1	1	242	264	14.9486
((.(((((.......))))).)	chr16:89629586-89629817(+)$1	1	127	149	15.0650
(((..(((.......)))..))	chr22:49957873-49958124(-)$1	1	178	200	15.0533
(((.((((.......)))))))	chr11:116649432-116649686(-)$1	1	73	95	15.1994
(...((((.......))))...	chr11:18428875-18429098(+)$1	1	34	56	14.3401
(...((((.......))))..)	chr1:155882804-155883047(-)$1	1	153	175	15.2853
(((.((((.......)))).))	chr7:6443394-6443669(+)$1	1	179	201	15.0883
((((((((.......))).)))	chr12:54677500-54677722(+)$1	1	126	148	14.9522
..(.((((.......)))).).	chr11:118963987-118964296(+)$1	1	264	286	15.4930
)((((.((.......)).))))	chr20:33590676-33590935(-)$1	1	170	192	13.5986
((((((.(.......).)))))	chr5:34182774-34183036(-)$1	1	233	255	14.5758
((.((((.........)))).)	chr8:101932505-101932773(-)$1	1	29	51	11.4870
)(((((((.......)))))))	chr2:55460416-55460654(+)$1	1	191	213	14.9203
((((..((.......))..)))	chr18:43664051-43664342(-)$1	1	263	285	13.9574
(((.((((.......)))).))	chr7:135333155-135333470(+)$1	1	209	231	15.0883
..(.((((.......)))).))	chr16:89032477-89032740(-)$1	1	34	56	15.4374
...(((((.......)))))..	chr22:50039605-50039858(-)$1	1	85	107	12.4968
(..((((.........))))..	chr17:47788326-47788588(-)$1	1	186	208	11.6770
((..((((.......))))..)	chr3:128996360-128996566(+)$1	1	165	187	15.4666
((((((((.......)).))))	chr5:177310840-177311133(+)$1	1	193	215	14.5603
(.(.((((.......))))).)	chr17:76117704-76117949(-)$1	1	218	240	15.7251

#PSSM
e : 0.19	c : 0.14	b : 0.12	g : 0.12	# : 0.08	f : 0.07	d : 0.05	= : 0.03	' : 0.03	: : 0.03	i : 0.03	F : 0.01	[ : 0.01	! : 0.01	a : 0.01	
g : 0.22	e : 0.17	c : 0.08	# : 0.07	[ : 0.07	d : 0.07	b : 0.05	f : 0.05	! : 0.05	= : 0.03	' : 0.03	" : 0.03	: : 0.01	i : 0.01	
g : 0.21	e : 0.14	[ : 0.12	c : 0.08	! : 0.07	f : 0.07	# : 0.07	a : 0.05	= : 0.03	' : 0.03	d : 0.03	" : 0.03	b : 0.01	i : 0.01	
e : 0.28	g : 0.19	[ : 0.15	d : 0.12	! : 0.05	= : 0.03	c : 0.03	f : 0.03	b : 0.03	" : 0.03	# : 0.01	
d : 0.33	e : 0.26	g : 0.15	! : 0.08	[ : 0.05	c : 0.03	= : 0.01	b : 0.01	f : 0.01	# : 0.01	
d : 0.31	e : 0.21	c : 0.15	g : 0.15	! : 0.07	[ : 0.03	= : 0.01	f : 0.01	# : 0.01	
d : 0.31	e : 0.17	c : 0.15	b : 0.15	g : 0.14	= : 0.01	f : 0.01	[ : 0.01	
d : 0.22	e : 0.17	c : 0.15	b : 0.15	g : 0.12	r : 0.08	a : 0.03	= : 0.01	f : 0.01	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
p : 0.91	r : 0.08	
d : 0.22	e : 0.17	c : 0.15	b : 0.15	g : 0.12	r : 0.08	a : 0.03	= : 0.01	f : 0.01	
d : 0.31	e : 0.17	c : 0.15	b : 0.15	g : 0.12	] : 0.03	= : 0.01	f : 0.01	
d : 0.31	e : 0.19	c : 0.15	g : 0.14	] : 0.07	2 : 0.05	3 : 0.03	= : 0.01	f : 0.01	
d : 0.33	e : 0.21	g : 0.15	] : 0.12	2 : 0.07	b : 0.03	3 : 0.03	= : 0.01	f : 0.01	
e : 0.29	g : 0.17	d : 0.12	] : 0.08	2 : 0.07	c : 0.05	= : 0.03	f : 0.03	b : 0.03	3 : 0.03	4 : 0.01	0 : 0.01	a : 0.01	
g : 0.22	] : 0.15	e : 0.15	f : 0.07	2 : 0.07	c : 0.05	4 : 0.05	d : 0.05	= : 0.03	a : 0.03	: : 0.01	i : 0.01	0 : 0.01	7 : 0.01	3 : 0.01	
g : 0.24	e : 0.19	c : 0.12	f : 0.07	d : 0.07	b : 0.05	4 : 0.05	= : 0.03	2 : 0.03	] : 0.01	: : 0.01	i : 0.01	0 : 0.01	h : 0.01	7 : 0.01	3 : 0.01	

#score	818.5190250989253
#seq	57
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_UTR_m1_run1.txt

#BEAR
======[bb[ccccccnnnnnccc333cccbb====	chr3:187455548-187455804(-)$1	256	47	83	13.1051
cc[ccc[dddd[ccclllccc333dddd]ccc]ccc	chr11:66394082-66394403(+)$1	321	249	285	10.6551
:ccc!!eeeeeddddnnnnndddd]eeeee333ccc	chr3:171527224-171527456(-)$1	232	53	89	9.7281
===========[cccooooooccc]===========	chr20:36155856-36156134(-)$1	278	177	213	18.1287
d]==========ccc]bb]bbccc============	chr5:138629426-138629692(+)$1	266	153	189	11.9595
:cccaggggggg[bboooooobb]ggggggg]a]cc	chr5:154135939-154136180(+)$1	241	195	231	12.3836
ggggggg[ccc[ddddlllddddccc]ggggggg22	chr2:242254345-242254644(-)$1	299	230	266	12.3373
bb[eeeee####ddddllldddd333eeeee]bb33	chr17:80192802-80193066(+)$1	264	144	180	10.0139
cccc!!eeeee[ddddmmmmdddd]eeeee4444cc	chr11:66406209-66406446(+)$1	237	116	152	10.0247
:===========cccnnnnnccc55555========	chr7:917845-918085(+)$1	240	97	133	10.6529
gggggiiiiiiiii[annnnna]iiiiiiiii333g	chr7:1577337-1577610(+)$1	273	94	130	14.3522
iii"""ffffffrrrrrrrrrffffffiiiiiiiii	chr2:223726320-223726589(+)$1	269	219	255	11.7478
=========[a[eeeeellleeeeea==========	chr20:62566493-62566717(+)$1	224	1	37	14.1386
ggggg!!bb[eeeeeooooooeeeee]bb]gggggg	chr18:46066469-46066690(+)$1	221	10	46	12.4322
dddd[dddd!!ddddoooooodddd22dddd]dddd	chr2:242751910-242752222(+)$1	312	263	299	9.5775
==========="""cccmmmmccc===========2	chr4:763946-764199(-)$1	253	168	204	14.7114
gg"""ffffff[a[aooooooa]a]ffffffggggg	chr2:159314562-159314818(+)$1	256	75	111	13.0493
===========[bbqqqqqqqqbb===========2	chr8:101963094-101963363(-)$1	269	57	93	12.4167
ccffffffccc[cccooooooccc]ccc333fffff	chr21:44269593-44269862(-)$1	269	32	68	12.7111
!iiiiiiiiiddddpppppppdddd22iiiiiiiii	chr5:74162099-74162359(-)$1	260	209	245	10.5972
bb[bb==========nnnnn==========]bbbb3	chr3:4402907-4403203(-)$1	296	242	278	12.6951
iiiii[ccc!!bbrrrrrrrrrbb22ccciiiiiii	chr2:10443794-10444035(+)$1	241	133	169	12.1686
b[ggggggg"""cccmmmmccc333ggggggg]bb:	chr16:75281748-75282081(-)$1	333	273	309	11.5404
dd"""==========lll==========]dddd333	chr2:173465738-173466073(+)$1	335	293	329	13.6738
c[bb[gggggggrrrrrrrrrggggggg]bbccc]e	chr17:7476459-7476731(+)$1	272	88	124	10.8590
ccdddd[ccca[cccmmmmccc]a]ccc22dddd]c	chr16:73081638-73081879(-)$1	241	45	81	9.7774
&&&ccc"""ffffffooooooffffffcccccc]gg	chr19:575271-575533(+)$1	262	53	89	9.6667
fffgggggggbb[arrrrrrrrra]bb]ggggggg]	chr15:72521959-72522269(-)$1	310	255	291	11.3159
===========[ccc[bb"""dddd[ccc[ffffff	chr20:32251549-32251799(-)$1	250	160	196	9.8056
ccc!!a[gggggggaooooooa]ggggggga22ccc	chr19:41770851-41771105(+)$1	254	28	64	13.7325
"hhhhhhhh!!ddddooooooddddhhhhhhhh333	chr1:21112686-21112933(-)$1	247	71	107	11.2112
:================mmmm===============	chr19:9785350-9785625(-)$1	275	208	244	14.5385
iiiiiiii!!eeeeeooooooeeeee333iiiiiii	chr16:75281984-75282248(-)$1	264	37	73	14.7992
hhhhhiiiiiiiiibboooooobb]iiiiiiiii::	chr7:6522908-6523164(-)$1	256	200	236	11.5752
FF==========cccmmmmccc4444==========	chr17:80192214-80192467(+)$1	253	18	54	14.1661
ggggg[bb[fffffflllffffff]bbggggggg]c	chr15:67391105-67391425(+)$1	320	24	60	10.4754
ggggggg[dddd!!cccmmmmccc]dddd]gggggg	chr17:75318617-75318871(+)$1	254	80	116	10.7079
ddggggggggggggggmmmmggggggg]ggggggg:	chr14:54421085-54421340(-)$1	255	171	207	10.6731

#otherMatches

#Seq PSSM
GCGGCCAGCGCAGCGCAGGCAGCGAUCCUGGCGGCU	chr3:187455548-187455804(-)$1	256	47	83	13.1051
GCAGCAAAUCUUGCUACUGGCUCUAGAUCUGCGGUU	chr11:66394082-66394403(+)$1	321	249	285	10.6551
CUCUGUGAAGCACUAAAUACUAGUAGCUUUUUAAGA	chr3:171527224-171527456(-)$1	232	53	89	9.7281
GGGUGCUGGCUCUGGCCUUGUCCAAGGUCAGCGCCC	chr20:36155856-36156134(-)$1	278	177	213	18.1287
CUGCGGGGAGCCGGCGGCGCGCCUUUCUUGCUCGCU	chr5:138629426-138629692(+)$1	266	153	189	11.9595
CCGCCCGGCGCUCCCCGUUUUGGUAGCGUUGCGAGC	chr5:154135939-154136180(+)$1	241	195	231	12.3836
GCUCCGGCCCGCGGGUUGUGCCCCGGCCCGGGGUGU	chr2:242254345-242254644(-)$1	299	230	266	12.3373
CUUGACUCAAACGAGCUGAGCUCCUGGAGUUUAGAA	chr17:80192802-80193066(+)$1	264	144	180	10.0139
CCGUCACUGAGAGCCGACCUCGGUCCUCGGCAUUGC	chr11:66406209-66406446(+)$1	237	116	152	10.0247
CUGCAGAAUGUUCAGUUGUUCUGUGUGUGGCAUUCU	chr7:917845-918085(+)$1	240	97	133	10.6529
CCCUGGCCCAGGGUGUGGGGAGGGUCCUGGGCUGGC	chr7:1577337-1577610(+)$1	273	94	130	14.3522
GGGUUUGAGAGUUGCAGCUUUGCUUUUCCCCAAGUG	chr2:223726320-223726589(+)$1	269	219	255	11.7478
CAGUUUGCGUCGUCACAUGCUGUGAGUGUGGGCUGU	chr20:62566493-62566717(+)$1	224	1	37	14.1386
CCAAAUCGGUGGACCCGUUGCGGUCUCCCCUUUGGU	chr18:46066469-46066690(+)$1	221	10	46	12.4322
AGGGCCGCGUCUCUGGAGCAGCAGACCCGUGUCCCU	chr2:242751910-242752222(+)$1	312	263	299	9.5775
CGUACACAUAUGUAGCAUGCAUGUGUGUGUGUGCGG	chr4:763946-764199(-)$1	253	168	204	14.7114
GUCAGGUGUGUGUGUACAGCGGGGGACGCGCGCUGC	chr2:159314562-159314818(+)$1	256	75	111	13.0493
ACUUUUUUUGCUCCUUGUGAACGGGCGGGGGAGGUG	chr8:101963094-101963363(-)$1	269	57	93	12.4167
GUGUCCGCUGCAUCUUCCUCUAGGAGCAUCUGUGGG	chr21:44269593-44269862(-)$1	269	32	68	12.7111
UCCGGGGCGAGCGGGAGGCAGCCGCACUCGCCCUGG	chr5:74162099-74162359(-)$1	260	209	245	10.5972
CGAGGACCUUGAAUGAGCUAUAUUCAGGGUAUCCGG	chr3:4402907-4403203(-)$1	296	242	278	12.6951
cgaccugggccagacgcgccaccuuccccggucgcg	chr2:10443794-10444035(+)$1	241	133	169	12.1686
UGUCUGCCCCCAACCCUGGGGUCUUGGGCAGAGAAC	chr16:75281748-75282081(-)$1	333	273	309	11.5404
ACGGGUUUAUUUUAAAGUUUAAAAUAGAAGUAAACA	chr2:173465738-173466073(+)$1	335	293	329	13.6738
CUCCCUGUGCCGGGGGAGGGACGGCGCGCGGGGUUC	chr17:7476459-7476731(+)$1	272	88	124	10.8590
UGCUCCUGACCAGAGCCACCUCCGAGUCCUGGGGCC	chr16:73081638-73081879(-)$1	241	45	81	9.7774
UUUGCCUCUCCUGAAACUUGCUUCAGGGGCGUCUGC	chr19:575271-575533(+)$1	262	53	89	9.6667
GAGCUUCCUGCUGUGGGAGGGAGGGGGACAGGAAGC	chr15:72521959-72522269(-)$1	310	255	291	11.3159
CGCGGCUGCUCCUCGGCGGGGCCGGCUUCGCGGGGA	chr20:32251549-32251799(-)$1	250	160	196	9.8056
CCUGACACUCAGUGCAGGGGGGACACUGGGGGAGGG	chr19:41770851-41771105(+)$1	254	28	64	13.7325
CGGCUGUCGCUUUGCUGCUCCGCGACGGCGGCCUUG	chr1:21112686-21112933(-)$1	247	71	107	11.2112
UGGGAGUUUUUUUCUUUCCGAAAGGAAAAGGAUUUC	chr19:9785350-9785625(-)$1	275	208	244	14.5385
ugccugcuaugugcgaggcucugugcugggGCGGGU	chr16:75281984-75282248(-)$1	264	37	73	14.7992
GGCUUGCCGAGAGGUCGUCAGUGAUUUUCUUGGCGU	chr7:6522908-6523164(-)$1	256	200	236	11.5752
CUCCCGGGUUUCCCAGAAAUGGUUCCGAGGCCUGGG	chr17:80192214-80192467(+)$1	253	18	54	14.1661
GUCCUACGCAUCCCCAGCGGGGGUCUGAGGGCCCAC	chr15:67391105-67391425(+)$1	320	24	60	10.4754
guggccuugagcaagccacuuggcagcucugggccg	chr17:75318617-75318871(+)$1	254	80	116	10.7079
GUUCACCGUUUUCUCGACUCCGGGGAACAUGGUGGG	chr14:54421085-54421340(-)$1	255	171	207	10.6731

#DB
((((((.((.((((((.....)))...)))))))))	chr3:187455548-187455804(-)$1	1	47	83	13.1051
((.(((.((((.(((...)))...)))).))).)))	chr11:66394082-66394403(+)$1	1	249	285	10.6551
.(((..(((((((((.....)))).)))))...)))	chr3:171527224-171527456(-)$1	1	53	89	9.7281
(((((((((((.(((......))).)))))))))))	chr20:36155856-36156134(-)$1	1	177	213	18.1287
).))))))))))))).)).)))))))))))))))))	chr5:138629426-138629692(+)$1	1	153	189	11.9595
.(((((((((((.((......)).))))))).).))	chr5:154135939-154136180(+)$1	1	195	231	12.3836
(((((((.(((.((((...))))))).)))))))..	chr2:242254345-242254644(-)$1	1	230	266	12.3373
((.(((((....((((...))))...))))).))..	chr17:80192802-80193066(+)$1	1	144	180	10.0139
((((..(((((.((((....)))).)))))....))	chr11:66406209-66406446(+)$1	1	116	152	10.0247
.((((((((((((((.....))).....))))))))	chr7:917845-918085(+)$1	1	97	133	10.6529
((((((((((((((.(.....).)))))))))...)	chr7:1577337-1577610(+)$1	1	94	130	14.3522
(((...((((((.........)))))))))))))))	chr2:223726320-223726589(+)$1	1	219	255	11.7478
(((((((((.(.(((((...))))))))))))))))	chr20:62566493-62566717(+)$1	1	1	37	14.1386
(((((..((.(((((......))))).)).))))))	chr18:46066469-46066690(+)$1	1	10	46	12.4322
((((.((((..((((......))))..)))).))))	chr2:242751910-242752222(+)$1	1	263	299	9.5775
(((((((((((...(((....)))))))))))))).	chr4:763946-764199(-)$1	1	168	204	14.7114
((...((((((.(.(......).).)))))))))))	chr2:159314562-159314818(+)$1	1	75	111	13.0493
(((((((((((.((........))))))))))))).	chr8:101963094-101963363(-)$1	1	57	93	12.4167
(((((((((((.(((......))).)))...)))))	chr21:44269593-44269862(-)$1	1	32	68	12.7111
.(((((((((((((.......))))..)))))))))	chr5:74162099-74162359(-)$1	1	209	245	10.5972
((.((((((((((((.....)))))))))).)))).	chr3:4402907-4403203(-)$1	1	242	278	12.6951
(((((.(((..((.........))..))))))))))	chr2:10443794-10444035(+)$1	1	133	169	12.1686
(.(((((((...(((....)))...))))))).)).	chr16:75281748-75282081(-)$1	1	273	309	11.5404
((...((((((((((...)))))))))).))))...	chr2:173465738-173466073(+)$1	1	293	329	13.6738
(.((.(((((((.........))))))).))))).)	chr17:7476459-7476731(+)$1	1	88	124	10.8590
((((((.((((.(((....))).).)))..)))).)	chr16:73081638-73081879(-)$1	1	45	81	9.7774
...(((...((((((......)))))))))))).))	chr19:575271-575533(+)$1	1	53	89	9.6667
((((((((((((.(.........).)).))))))).	chr15:72521959-72522269(-)$1	1	255	291	11.3159
(((((((((((.(((.((...((((.(((.((((((	chr20:32251549-32251799(-)$1	1	160	196	9.8056
(((..(.((((((((......).))))))))..)))	chr19:41770851-41771105(+)$1	1	28	64	13.7325
.((((((((..((((......))))))))))))...	chr1:21112686-21112933(-)$1	1	71	107	11.2112
.((((((((((((((((....)))))))))))))))	chr19:9785350-9785625(-)$1	1	208	244	14.5385
((((((((..(((((......)))))...)))))))	chr16:75281984-75282248(-)$1	1	37	73	14.7992
)))))(((((((((((......)).)))))))))..	chr7:6522908-6523164(-)$1	1	200	236	11.5752
(((((((((((((((....)))....))))))))))	chr17:80192214-80192467(+)$1	1	18	54	14.1661
(((((.((.((((((...)))))).))))))))).)	chr15:67391105-67391425(+)$1	1	24	60	10.4754
(((((((.((((..(((....))).)))).))))))	chr17:75318617-75318871(+)$1	1	80	116	10.7079
))((((((((((((((....))))))).))))))).	chr14:54421085-54421340(-)$1	1	171	207	10.6731

#PSSM
= : 0.15	c : 0.15	g : 0.15	: : 0.10	d : 0.10	b : 0.07	i : 0.07	! : 0.02	& : 0.02	f : 0.02	" : 0.02	h : 0.02	F : 0.02	
= : 0.21	c : 0.18	g : 0.15	i : 0.10	d : 0.07	b : 0.05	[ : 0.05	h : 0.05	] : 0.02	& : 0.02	f : 0.02	F : 0.02	
= : 0.26	g : 0.18	c : 0.10	i : 0.10	[ : 0.07	d : 0.05	" : 0.05	f : 0.05	h : 0.05	b : 0.02	& : 0.02	
= : 0.26	g : 0.21	c : 0.13	" : 0.07	i : 0.07	d : 0.05	b : 0.05	h : 0.05	e : 0.02	f : 0.02	! : 0.02	
= : 0.26	g : 0.21	! : 0.07	" : 0.07	i : 0.07	c : 0.05	[ : 0.05	h : 0.05	a : 0.02	e : 0.02	f : 0.02	b : 0.02	d : 0.02	
= : 0.31	g : 0.18	i : 0.10	! : 0.07	c : 0.05	d : 0.05	f : 0.05	[ : 0.05	e : 0.02	" : 0.02	a : 0.02	h : 0.02	
= : 0.28	g : 0.18	[ : 0.10	i : 0.10	e : 0.07	f : 0.07	! : 0.02	d : 0.02	c : 0.02	" : 0.02	h : 0.02	b : 0.02	
= : 0.28	g : 0.15	i : 0.10	b : 0.07	e : 0.07	f : 0.07	d : 0.05	[ : 0.05	c : 0.05	" : 0.02	h : 0.02	
= : 0.28	g : 0.15	c : 0.10	d : 0.07	i : 0.07	b : 0.05	e : 0.05	f : 0.05	# : 0.02	" : 0.02	h : 0.02	! : 0.02	[ : 0.02	
= : 0.26	g : 0.13	f : 0.10	! : 0.10	[ : 0.07	c : 0.07	i : 0.07	d : 0.05	e : 0.05	# : 0.02	" : 0.02	
= : 0.26	e : 0.10	g : 0.10	f : 0.10	c : 0.07	d : 0.07	! : 0.07	i : 0.05	a : 0.05	# : 0.02	" : 0.02	b : 0.02	
[ : 0.26	= : 0.15	d : 0.13	g : 0.10	f : 0.07	i : 0.05	e : 0.05	" : 0.05	b : 0.05	c : 0.02	# : 0.02	
c : 0.26	d : 0.18	e : 0.07	= : 0.07	[ : 0.05	i : 0.05	r : 0.05	b : 0.05	f : 0.05	g : 0.05	" : 0.02	a : 0.02	! : 0.02	
c : 0.26	d : 0.18	r : 0.07	e : 0.07	= : 0.07	b : 0.05	i : 0.05	f : 0.05	g : 0.05	" : 0.02	[ : 0.02	a : 0.02	! : 0.02	
c : 0.31	d : 0.15	r : 0.10	e : 0.07	= : 0.07	b : 0.05	a : 0.05	f : 0.05	[ : 0.02	q : 0.02	p : 0.02	g : 0.02	
o : 0.26	r : 0.10	c : 0.07	l : 0.07	n : 0.07	d : 0.07	m : 0.07	] : 0.02	a : 0.02	e : 0.02	q : 0.02	p : 0.02	[ : 0.02	= : 0.02	b : 0.02	g : 0.02	
o : 0.28	n : 0.13	l : 0.13	m : 0.13	r : 0.10	b : 0.05	c : 0.05	e : 0.02	q : 0.02	p : 0.02	= : 0.02	
o : 0.28	m : 0.21	l : 0.15	n : 0.13	r : 0.10	b : 0.05	q : 0.02	p : 0.02	
o : 0.28	m : 0.21	n : 0.13	r : 0.10	l : 0.07	c : 0.02	] : 0.02	q : 0.02	p : 0.02	= : 0.02	" : 0.02	f : 0.02	
o : 0.28	n : 0.13	m : 0.13	c : 0.10	r : 0.10	d : 0.05	b : 0.02	l : 0.02	q : 0.02	p : 0.02	= : 0.02	" : 0.02	f : 0.02	
o : 0.28	c : 0.13	d : 0.10	r : 0.10	m : 0.07	n : 0.05	= : 0.05	b : 0.02	e : 0.02	q : 0.02	p : 0.02	" : 0.02	f : 0.02	g : 0.02	
c : 0.26	d : 0.21	a : 0.07	f : 0.07	e : 0.07	= : 0.07	r : 0.05	g : 0.05	3 : 0.02	b : 0.02	q : 0.02	o : 0.02	
d : 0.21	c : 0.18	b : 0.10	] : 0.10	f : 0.07	e : 0.07	= : 0.07	3 : 0.05	g : 0.05	r : 0.02	4 : 0.02	
c : 0.18	d : 0.15	3 : 0.07	f : 0.07	e : 0.07	a : 0.07	b : 0.07	= : 0.07	g : 0.07	] : 0.02	5 : 0.02	i : 0.02	4 : 0.02	
] : 0.26	= : 0.15	d : 0.13	g : 0.10	3 : 0.07	e : 0.07	f : 0.05	c : 0.02	5 : 0.02	i : 0.02	2 : 0.02	4 : 0.02	
= : 0.18	g : 0.13	e : 0.10	c : 0.07	f : 0.07	2 : 0.07	3 : 0.05	d : 0.05	i : 0.05	b : 0.05	5 : 0.02	a : 0.02	[ : 0.02	h : 0.02	4 : 0.02	
= : 0.23	g : 0.13	c : 0.10	e : 0.07	f : 0.07	3 : 0.05	d : 0.05	] : 0.05	i : 0.05	2 : 0.05	b : 0.05	5 : 0.02	h : 0.02	
= : 0.23	c : 0.15	g : 0.15	i : 0.10	d : 0.07	e : 0.07	] : 0.05	5 : 0.02	b : 0.02	f : 0.02	h : 0.02	3 : 0.02	
= : 0.23	g : 0.18	c : 0.10	i : 0.10	] : 0.07	e : 0.07	d : 0.05	3 : 0.05	b : 0.02	f : 0.02	2 : 0.02	h : 0.02	
= : 0.23	g : 0.18	i : 0.15	c : 0.07	e : 0.07	] : 0.05	d : 0.05	f : 0.02	3 : 0.02	b : 0.02	2 : 0.02	[ : 0.02	h : 0.02	
= : 0.21	g : 0.21	i : 0.15	d : 0.07	b : 0.05	c : 0.05	3 : 0.05	f : 0.05	e : 0.02	4 : 0.02	] : 0.02	a : 0.02	h : 0.02	
= : 0.21	g : 0.21	i : 0.15	c : 0.07	] : 0.07	b : 0.05	f : 0.05	d : 0.05	3 : 0.02	4 : 0.02	2 : 0.02	h : 0.02	
= : 0.23	g : 0.18	i : 0.13	d : 0.07	] : 0.05	3 : 0.05	b : 0.05	f : 0.05	c : 0.05	a : 0.02	4 : 0.02	2 : 0.02	h : 0.02	
= : 0.23	g : 0.18	i : 0.13	c : 0.10	b : 0.07	3 : 0.07	] : 0.05	d : 0.05	f : 0.05	4 : 0.02	
= : 0.23	g : 0.15	c : 0.13	3 : 0.10	i : 0.10	] : 0.07	f : 0.05	b : 0.05	2 : 0.02	d : 0.02	: : 0.02	
= : 0.18	c : 0.18	g : 0.13	3 : 0.10	i : 0.10	2 : 0.07	: : 0.07	f : 0.05	d : 0.02	e : 0.02	] : 0.02	

#score	458.1061457000288
#seq	38
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_CDS_m1_run1.txt

#BEAR
"bb!!eeeeeooooooeeeee22bb	chr19:45882858-45883166(-)$1	308	144	169	10.0677
:==========mmmm==========	chr17:46058428-46058681(+)$1	253	1	26	9.9879
ggggggg!!bbnnnnnbbggggggg	chr1:46034482-46034747(+)$1	265	119	144	9.2263
ffff####cccnnnnnccc333fff	chr2:44051040-44051277(-)$1	237	60	85	8.7545
:ggggggg[aooooooa]ggggggg	chr3:52842587-52842843(+)$1	256	164	189	12.0422
============lll==========	chr14:103576588-103576837(+)$1	249	209	234	11.8845
c####eeeeeooooooeeeee4444	chr3:132279844-132280087(-)$1	243	9	34	11.3258
=============lll=========	chr6:5109453-5109799(-)$1	346	8	33	11.7781
dddd[eeeeeooooooeeeeedddd	chr2:220074016-220074294(+)$1	278	119	144	9.5648
####ffffffooooooffffff22c	chr20:44978891-44979167(-)$1	276	145	170	11.4609
===========lll===========	chr5:79733123-79733379(+)$1	256	85	110	11.8638
eeee!!ddddoooooodddd]eeee	chrM:15716-15932(+)$1	216	24	49	10.2746
ee####ddddoooooodddd22eee	chr16:74908012-74908256(-)$1	244	165	190	10.3816
!!iiiiiiiiinnnnniiiiiiiii	chr3:184106274-184106602(+)$1	328	23	48	11.2110
"""bb!!==========!!gggggg	chr17:80016415-80016696(-)$1	281	196	221	8.4044
ffccc!!cccooooooccc22ccc2	chr3:184101256-184101521(+)$1	265	81	106	11.8521
!a[gggggggooooooggggggga]	chrX:48682236-48682524(+)$1	288	109	134	13.3660
eeeee!!cccooooooccc4444ee	chr16:67917856-67918117(+)$1	261	138	163	11.6172
hhhh[eeeeeooooooeeeeehhhh	chr9:117063464-117063685(+)$1	221	29	54	9.6946
ggggggg[ccclllcccggggggg:	chrX:70787478-70787701(+)$1	223	110	135	8.5209
[dddd!!cccoooooocccdddd]g	chr3:9876873-9877166(+)$1	293	91	116	11.1990
cc[ccc!!cccnnnnnccc4444cc	chr11:65404296-65404539(+)$1	243	210	235	9.2853
iiiiiiicccoooooocccffffff	chr3:52842134-52842337(+)$1	203	126	151	12.5058
eeeeffffffooooooffffff]ee	chr7:151947837-151948071(-)$1	234	8	33	10.5773
"""gggggggoooooogggggggee	chr5:167945994-167946272(+)$1	278	118	143	13.2937
======"""ddddllldddd333==	chr2:219563719-219564026(+)$1	307	228	253	8.9654
==========rrrrrrrrr======	chr2:95753113-95753350(-)$1	237	193	218	9.9628
!!=============bb[ggggggg	chr3:184103819-184104045(+)$1	226	147	172	8.6575
!!ccc[cccaooooooa]cccccc2	chr9:14737405-14737692(-)$1	287	107	132	12.0705
b"""ffffffooooooffffff333	chr3:52842106-52842334(+)$1	228	191	216	12.0436
:iiiiiiiiiooooooiiiiiiiii	chrX:70777294-70777540(+)$1	246	89	114	12.9640
bb[a[cccbboooooobb]ccca]b	chr2:42990349-42990583(-)$1	234	34	59	10.5550
============mmmm=========	chr17:78093022-78093320(+)$1	298	71	96	10.8942
c!!gggggggooooooggggggg22	chr17:40268952-40269190(-)$1	238	89	114	13.3111
:iiiiiiiiiooooooiiiiiiiii	chr3:184107068-184107369(+)$1	301	209	234	12.9640
[bb####cccooooooccc22bbcc	chrX:48681489-48681763(+)$1	274	32	57	11.1261
d"""gggggggnnnnnggggggg22	chr20:61468389-61468593(+)$1	204	27	52	10.2697
gg!!ffffffooooooffffff333	chr16:88781840-88782124(-)$1	284	175	200	12.0659
fffff[ddddoooooodddd]ffff	chr11:62370238-62370537(-)$1	299	159	184	10.1765
bb:gggggggooooooggggggg:G	chr20:34129986-34130230(+)$1	244	137	162	10.0365
bffffff!!aooooooa22ffffff	chr19:49611271-49611523(+)$1	252	90	115	10.1143
(iiiiiiiiillliiiiiiiii]hh	chr14:24612503-24612731(-)$1	228	138	163	9.0377
b[dddd[cccooooooccc]dddd]	chr4:187209664-187209886(+)$1	222	56	81	10.8089
==========oooooo=========	chr1:46035510-46035746(+)$1	236	41	66	14.6020
ffccc!!cccooooooccc22ccc2	chr3:184101210-184101456(+)$1	246	127	152	11.8521
gggggg!!bboooooobb4444ggg	chr12:56119526-56119783(-)$1	257	97	122	11.7143
eee[ffffffooooooffffff22e	chr9:117071608-117071858(+)$1	250	205	230	10.7705
d"""gggggggnnnnnggggggg22	chr20:61468393-61468662(+)$1	269	23	48	10.2697
iiiii[ddddooooooddddiiiii	chr20:61471945-61472181(+)$1	236	25	50	12.0690
dd!!gggggggnnnnnggggggg]d	chrX:70782750-70782968(+)$1	218	10	35	9.8742

#otherMatches

#Seq PSSM
ACAUUGGUCUCUACCAGGAUCCCUG	chr19:45882858-45883166(-)$1	308	144	169	10.0677
UGGGGGUUUGGUUUCCCGAGCCUCU	chr17:46058428-46058681(+)$1	253	1	26	9.9879
GCAGGUCCAGCGGAAAGUGAUCUGC	chr1:46034482-46034747(+)$1	265	119	144	9.2263
AUUACGCGUCUCCUUCAGAAUCUGA	chr2:44051040-44051277(-)$1	237	60	85	8.7545
ACAUGGGCACAGAGAGGGGCCUGUG	chr3:52842587-52842843(+)$1	256	164	189	12.0422
UCGGGCGGGGGGGGGCCUCCCGCCC	chr14:103576588-103576837(+)$1	249	209	234	11.8845
CUUUUCCUCCCCUAUAGGAGGUUGU	chr3:132279844-132280087(-)$1	243	9	34	11.3258
CCUUCUGGCCUUUCCCAGGGGCUAG	chr6:5109453-5109799(-)$1	346	8	33	11.7781
CGGGAGUGAUGUGGAGGUCGCCCUG	chr2:220074016-220074294(+)$1	278	119	144	9.5648
CAAAUGGCUUAGAAGCAGGCCACUC	chr20:44978891-44979167(-)$1	276	145	170	11.4609
GUUAGAAUCAAUUGUUGAUUUUAAC	chr5:79733123-79733379(+)$1	256	85	110	11.8638
CUCCUCAUUCUAACCUGAAUCGGAG	chrM:15716-15932(+)$1	216	24	49	10.2746
GUAUUGUCUGAAAUCCCAGAGGACC	chr16:74908012-74908256(-)$1	244	165	190	10.3816
GCUGGGUAUUCAAAGAGAAUACUCA	chr3:184106274-184106602(+)$1	328	23	48	11.2110
CAGCCAAGCCCCUGCCCAGGCCUGG	chr17:80016415-80016696(-)$1	281	196	221	8.4044
GUGGUGGCCAUGACACUGGAGACCA	chr3:184101256-184101521(+)$1	265	81	106	11.8521
UGUGACACCACUGCCCUGGUGUCCC	chrX:48682236-48682524(+)$1	288	109	134	13.3660
GCAGCUCGGCGUCUCAGCCUCAUGC	chr16:67917856-67918117(+)$1	261	138	163	11.6172
cucaguuuccucaucuggaaauggg	chr9:117063464-117063685(+)$1	221	29	54	9.6946
GGUGACUAUGCCAGGUAAGUUGCUG	chrX:70787478-70787701(+)$1	223	110	135	8.5209
CCCUUGUUGGUACAUUCCAGAGGCG	chr3:9876873-9877166(+)$1	293	91	116	11.1990
CCUCUCUGCUGGACCACAGAACUGA	chr11:65404296-65404539(+)$1	243	210	235	9.2853
UCACCUGCUCAGCAACGAGAGGAGG	chr3:52842134-52842337(+)$1	203	126	151	12.5058
UUUUUUGUUAAGAUUAUAACAAUGA	chr7:151947837-151948071(-)$1	234	8	33	10.5773
GUAUGCUGCUAUGUGAAGCAGUAGC	chr5:167945994-167946272(+)$1	278	118	143	13.2937
GCUGUUACAGUGCGAAGUACCCCAG	chr2:219563719-219564026(+)$1	307	228	253	8.9654
CUGCACAGGGAAUGAAGCGCUCUGU	chr2:95753113-95753350(-)$1	237	193	218	9.9628
AGUGGGGGCAGUGGGGAGGGUGCAG	chr3:184103819-184104045(+)$1	226	147	172	8.6575
GACCAAGUGCAUGCUGGCCACUGGG	chr9:14737405-14737692(-)$1	287	107	132	12.0705
CAGCCCAGGCACAUUAGUCUGGUGG	chr3:52842106-52842334(+)$1	228	191	216	12.0436
GUUGGUCAGUAUUGUGGCUGACCAG	chrX:70777294-70777540(+)$1	246	89	114	12.9640
CCUGCUGGAGUUCUUCCUGCCACUG	chr2:42990349-42990583(-)$1	234	34	59	10.5550
GUUGAUGGGAGAGCAGUUUCUCGUC	chr17:78093022-78093320(+)$1	298	71	96	10.8942
CUUCACGGAGAUUGUCUUCUGUGCU	chr17:40268952-40269190(-)$1	238	89	114	13.3111
CCUUCUUGCAUUCUCCUGUGGGAAG	chr3:184107068-184107369(+)$1	301	209	234	12.9640
CUCACUCAGGACCAGCCCUCAGAGG	chrX:48681489-48681763(+)$1	274	32	57	11.1261
ACCCUUGUUUUCCCAAAGAACAAAU	chr20:61468389-61468593(+)$1	204	27	52	10.2697
GGCACUCCUCAGGCCGGGGGAGCCA	chr16:88781840-88782124(-)$1	284	175	200	12.0659
GCCGGCCGCUGUGCUAGGCGUCUGG	chr11:62370238-62370537(-)$1	299	159	184	10.1765
GUAUUACCUCACCACGGAGGUAAGG	chr20:34129986-34130230(+)$1	244	137	162	10.0365
CCCCCUGAUGAUGGGCCUCCAGGGG	chr19:49611271-49611523(+)$1	252	90	115	10.1143
UGAUCUAUAUGUUGUGUGGAUUCCC	chr14:24612503-24612731(-)$1	228	138	163	9.0377
GUGGUCGAGUACGUGGACUGGAUUC	chr4:187209664-187209886(+)$1	222	56	81	10.8089
UCUCUUUCCAGGUGGAUGGGAAGAG	chr1:46035510-46035746(+)$1	236	41	66	14.6020
GUGGUGGCCAUGACACUGGAGACCA	chr3:184101210-184101456(+)$1	246	127	152	11.8521
CUUCAGGGCUGUGUGGAGAAGAUUG	chr12:56119526-56119783(-)$1	257	97	122	11.7143
UGUUUGGAAAAAUGUGUUUCUAUUA	chr9:117071608-117071858(+)$1	250	205	230	10.7705
ACCCUUGUUUUCCCAAAGAACAAAU	chr20:61468393-61468662(+)$1	269	23	48	10.2697
GGGCUUCCAGGUGCCAUUGGGGCCC	chr20:61471945-61472181(+)$1	236	25	50	12.0690
AGGAAACUUCGCCAGCUGAAGUUGC	chrX:70782750-70782968(+)$1	218	10	35	9.8742

#DB
.((..(((((......)))))..))	chr19:45882858-45883166(-)$1	1	144	169	10.0677
.((((((((((....))))))))))	chr17:46058428-46058681(+)$1	1	1	26	9.9879
(((((((..((.....)))))))))	chr1:46034482-46034747(+)$1	1	119	144	9.2263
((((....(((.....)))...)))	chr2:44051040-44051277(-)$1	1	60	85	8.7545
.(((((((.(......).)))))))	chr3:52842587-52842843(+)$1	1	164	189	12.0422
((((((((((((...))))))))))	chr14:103576588-103576837(+)$1	1	209	234	11.8845
(....(((((......)))))....	chr3:132279844-132280087(-)$1	1	9	34	11.3258
(((((((((((((...)))))))))	chr6:5109453-5109799(-)$1	1	8	33	11.7781
((((.(((((......)))))))))	chr2:220074016-220074294(+)$1	1	119	144	9.5648
....((((((......))))))..)	chr20:44978891-44979167(-)$1	1	145	170	11.4609
(((((((((((...)))))))))))	chr5:79733123-79733379(+)$1	1	85	110	11.8638
((((..((((......)))).))))	chrM:15716-15932(+)$1	1	24	49	10.2746
((....((((......))))..)))	chr16:74908012-74908256(-)$1	1	165	190	10.3816
..(((((((((.....)))))))))	chr3:184106274-184106602(+)$1	1	23	48	11.2110
...((..((((((((((..((((((	chr17:80016415-80016696(-)$1	1	196	221	8.4044
(((((..(((......)))..))).	chr3:184101256-184101521(+)$1	1	81	106	11.8521
.(.(((((((......)))))))).	chrX:48682236-48682524(+)$1	1	109	134	13.3660
(((((..(((......)))....))	chr16:67917856-67918117(+)$1	1	138	163	11.6172
((((.(((((......)))))))))	chr9:117063464-117063685(+)$1	1	29	54	9.6946
(((((((.(((...)))))))))).	chrX:70787478-70787701(+)$1	1	110	135	8.5209
.((((..(((......))))))).)	chr3:9876873-9877166(+)$1	1	91	116	11.1990
((.(((..(((.....)))....))	chr11:65404296-65404539(+)$1	1	210	235	9.2853
)))))))(((......)))((((((	chr3:52842134-52842337(+)$1	1	126	151	12.5058
((((((((((......)))))).))	chr7:151947837-151948071(-)$1	1	8	33	10.5773
...(((((((......)))))))))	chr5:167945994-167946272(+)$1	1	118	143	13.2937
((((((...((((...))))...))	chr2:219563719-219564026(+)$1	1	228	253	8.9654
((((((((((.........))))))	chr2:95753113-95753350(-)$1	1	193	218	9.9628
..(((((((((((((((.(((((((	chr3:184103819-184104045(+)$1	1	147	172	8.6575
..(((.((((......).)))))).	chr9:14737405-14737692(-)$1	1	107	132	12.0705
(...((((((......))))))...	chr3:52842106-52842334(+)$1	1	191	216	12.0436
.(((((((((......)))))))))	chrX:70777294-70777540(+)$1	1	89	114	12.9640
((.(.(((((......)).)))).)	chr2:42990349-42990583(-)$1	1	34	59	10.5550
((((((((((((....)))))))))	chr17:78093022-78093320(+)$1	1	71	96	10.8942
(..(((((((......)))))))..	chr17:40268952-40269190(-)$1	1	89	114	13.3111
.(((((((((......)))))))))	chr3:184107068-184107369(+)$1	1	209	234	12.9640
.((....(((......)))..))))	chrX:48681489-48681763(+)$1	1	32	57	11.1261
(...(((((((.....)))))))..	chr20:61468389-61468593(+)$1	1	27	52	10.2697
((..((((((......))))))...	chr16:88781840-88782124(-)$1	1	175	200	12.0659
(((((.((((......)))).))))	chr11:62370238-62370537(-)$1	1	159	184	10.1765
)).(((((((......))))))).)	chr20:34129986-34130230(+)$1	1	137	162	10.0365
(((((((..(......)..))))))	chr19:49611271-49611523(+)$1	1	90	115	10.1143
.(((((((((...))))))))).))	chr14:24612503-24612731(-)$1	1	138	163	9.0377
(.((((.(((......))).)))).	chr4:187209664-187209886(+)$1	1	56	81	10.8089
((((((((((......)))))))))	chr1:46035510-46035746(+)$1	1	41	66	14.6020
(((((..(((......)))..))).	chr3:184101210-184101456(+)$1	1	127	152	11.8521
((((((..((......))....)))	chr12:56119526-56119783(-)$1	1	97	122	11.7143
(((.((((((......))))))..)	chr9:117071608-117071858(+)$1	1	205	230	10.7705
(...(((((((.....)))))))..	chr20:61468393-61468662(+)$1	1	23	48	10.2697
(((((.((((......)))))))))	chr20:61471945-61472181(+)$1	1	25	50	12.0690
((..(((((((.....))))))).)	chrX:70782750-70782968(+)$1	1	10	35	9.8742

#PSSM
= : 0.14	e : 0.10	b : 0.10	: : 0.08	g : 0.08	f : 0.08	d : 0.08	! : 0.08	" : 0.06	c : 0.06	[ : 0.04	i : 0.04	# : 0.02	h : 0.02	( : 0.02	
= : 0.16	g : 0.10	f : 0.10	e : 0.10	" : 0.10	i : 0.10	b : 0.08	! : 0.08	d : 0.06	# : 0.04	a : 0.02	h : 0.02	c : 0.02	[ : 0.02	
= : 0.18	i : 0.12	" : 0.10	g : 0.08	e : 0.08	f : 0.06	# : 0.06	d : 0.06	c : 0.06	[ : 0.06	! : 0.06	b : 0.04	h : 0.02	: : 0.02	
= : 0.18	g : 0.16	i : 0.12	# : 0.08	c : 0.08	! : 0.06	f : 0.06	d : 0.06	e : 0.06	" : 0.06	b : 0.02	h : 0.02	a : 0.02	[ : 0.02	
g : 0.21	= : 0.18	f : 0.14	i : 0.12	# : 0.08	c : 0.08	[ : 0.06	! : 0.04	d : 0.04	b : 0.02	e : 0.02	
g : 0.21	= : 0.18	f : 0.12	! : 0.12	i : 0.10	e : 0.08	# : 0.06	[ : 0.06	c : 0.04	d : 0.02	
g : 0.19	= : 0.16	! : 0.14	f : 0.12	i : 0.10	e : 0.08	d : 0.08	# : 0.04	c : 0.04	" : 0.02	[ : 0.02	
= : 0.18	c : 0.18	g : 0.16	f : 0.10	e : 0.08	! : 0.08	d : 0.08	i : 0.08	# : 0.02	[ : 0.02	" : 0.02	
c : 0.21	= : 0.18	g : 0.14	f : 0.10	e : 0.08	d : 0.08	i : 0.08	! : 0.04	b : 0.04	[ : 0.02	" : 0.02	
c : 0.19	= : 0.18	g : 0.14	f : 0.10	d : 0.10	e : 0.08	i : 0.08	b : 0.06	a : 0.06	
o : 0.64	= : 0.14	c : 0.06	g : 0.06	b : 0.02	i : 0.02	d : 0.02	r : 0.02	l : 0.02	
o : 0.64	n : 0.14	= : 0.10	l : 0.06	m : 0.02	d : 0.02	r : 0.02	
o : 0.64	n : 0.14	l : 0.08	= : 0.06	m : 0.04	d : 0.02	r : 0.02	
o : 0.64	n : 0.14	l : 0.10	m : 0.04	= : 0.04	r : 0.02	i : 0.02	
o : 0.64	n : 0.14	l : 0.06	= : 0.06	m : 0.04	c : 0.02	r : 0.02	i : 0.02	
o : 0.64	n : 0.14	= : 0.08	l : 0.04	c : 0.02	r : 0.02	b : 0.02	m : 0.02	i : 0.02	
c : 0.19	= : 0.14	g : 0.14	f : 0.10	d : 0.10	e : 0.08	b : 0.08	i : 0.08	a : 0.06	r : 0.02	
c : 0.18	g : 0.16	= : 0.12	f : 0.10	d : 0.10	e : 0.08	i : 0.08	b : 0.06	] : 0.04	! : 0.02	r : 0.02	[ : 0.02	2 : 0.02	
g : 0.21	c : 0.19	= : 0.12	f : 0.10	d : 0.10	e : 0.08	i : 0.08	! : 0.02	r : 0.02	] : 0.02	2 : 0.02	4 : 0.02	
g : 0.23	= : 0.14	f : 0.14	d : 0.12	e : 0.08	i : 0.08	2 : 0.06	4 : 0.06	c : 0.04	3 : 0.02	] : 0.02	
g : 0.23	= : 0.14	f : 0.14	i : 0.10	e : 0.08	2 : 0.08	4 : 0.06	3 : 0.04	] : 0.04	d : 0.04	c : 0.04	
g : 0.23	f : 0.16	= : 0.14	i : 0.10	4 : 0.08	c : 0.08	d : 0.06	2 : 0.04	3 : 0.04	e : 0.02	h : 0.02	b : 0.02	
g : 0.25	= : 0.14	f : 0.08	i : 0.08	2 : 0.06	4 : 0.06	d : 0.06	c : 0.06	3 : 0.06	e : 0.04	] : 0.04	h : 0.02	a : 0.02	b : 0.02	
= : 0.16	g : 0.12	2 : 0.10	e : 0.10	c : 0.10	f : 0.08	i : 0.08	] : 0.06	d : 0.04	h : 0.04	3 : 0.04	b : 0.02	4 : 0.02	a : 0.02	: : 0.02	
= : 0.16	g : 0.12	e : 0.12	2 : 0.12	f : 0.08	i : 0.08	c : 0.06	b : 0.04	d : 0.04	] : 0.04	h : 0.04	3 : 0.04	4 : 0.02	: : 0.02	G : 0.02	

#score	547.3175845462821
#seq	50
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_transcript_m1_run2.txt

#BEAR
eee!!bb!!ccc[cccqqqqqqqqccc]ccc22bb]eee	chr7:138763159-138763422(-)$1	263	159	198	17.4650
[a[bb!!ccc[ccc[aqqqqqqqqa]cccccc22bb]a]	chr6:28890845-28891135(-)$1	290	108	147	17.5901
a[ggggggg[dddd[aqqqqqqqqadddd]ggggggg]a	chr19:15365957-15366212(-)$1	255	48	87	17.2231
iiiiiiii[ddddwwwwwwwwwwwwwwdddd]iiiiiii	chr10:133761188-133761447(+)$1	259	218	257	14.9947
dd[a[dddd!!ddddrrrrrrrrrdddd22dddd]addd	chr6:31746627-31746841(-)$1	214	97	136	12.4105
=========[ddddssssssssssdddd22=========	chr2:102490606-102490845(+)$1	239	120	159	15.8105
hhhhhhccc[dddd[aqqqqqqqqa]dddd]ccc]hhhh	chrX:153226832-153227098(-)$1	266	112	151	15.1655
gg[a[dddd####cccqqqqqqqqccc22dddda]gggg	chr9:130160004-130160276(+)$1	272	43	82	17.8402
%%%hhhhhhhh!!cccqqqqqqqqccc22hhhhhhhh]h	chrX:70753047-70753342(+)$1	295	15	54	14.1257
:a[iiiiiiiii[cccqqqqqqqqccciiiiiiiii]a:	chr2:21266223-21266466(-)$1	243	92	131	17.6447
!!ccc"""cccvvvvvvvvvvvvvccc333ccc333iii	chr12:123815626-123815902(-)$1	276	34	73	13.3980
c[eeeee"""ffffffrrrrrrrrrffffff4444eeee	chr6:31668585-31668830(-)$1	245	35	74	12.6846
!!ggggggg"""cccrrrrrrrrrccc333ggggggg22	chr16:18896715-18896976(-)$1	261	81	120	16.1281
======="""ffffffqqqqqqqqffffff22=======	chr12:56630696-56630927(+)$1	231	73	112	17.7927
[bbccc[cccbb[bbqqqqqqqqbb]bb]ccc]ccc]bb	chr11:66384417-66384681(+)$1	264	171	210	14.9373
eeeee!!eeeee[abbqqqqqqqqbb]a]eeeee22eee	chr1:40034331-40034592(-)$1	261	26	65	15.2943
cccccccccgggggggrrrrrrrrrggggggg]ccc]cc	chr1:52255101-52255426(-)$1	325	163	202	13.6830
cc[ccc[bb!!cccssssssssssccc22bbccc22ccc	chr1:1256221-1256478(-)$1	257	163	202	14.8654
&ddddccc$$$$$cccqqqqqqqqccc4444ccc]dddd	chr1:27212318-27212572(-)$1	254	91	130	16.4720
#dddd[ccc####cccqqqqqqqqccc22cccddddbb]	chr21:34901018-34901271(-)$1	253	113	152	17.2919
bb[ccc[a[ccc[cccqqqqqqqqccc]cccaccc]bb:	chr16:720962-721236(+)$1	274	219	258	17.7059
eeeee!!ddddeeeeeqqqqqqqqeeeee22dddd333e	chr11:61547631-61547908(+)$1	277	54	93	14.8216
i!!ccc[ccc[a[bboooooobb]accc]ccc4444iii	chr16:720514-720746(+)$1	232	128	167	11.7416
ee[ccc[iiiiiiiiissssssssssiiiiiiiiiccce	chr8:42025202-42025461(+)$1	259	20	59	14.2670
$$$ccc[eeeeeddddqqqqqqqqdddd]eeeeeccc33	chr1:3563088-3563336(-)$1	248	100	139	15.8761
dbbcccccc!!ddddqqqqqqqqdddd22ccc]ccc444	chr17:79650410-79650773(-)$1	363	81	120	15.9645
======[a!!a!!cccqqqqqqqqccc22a22a======	chr2:53977825-53978079(-)$1	254	98	137	20.2147
bb[a[==========rrrrrrrrr==========a]bb]	chrX:39921185-39921441(-)$1	256	135	174	14.9447
gggggg[eeeeeddddqqqqqqqqdddd]eeeee]gggg	chr2:174231069-174231302(+)$1	233	171	210	16.0716
cc[cccccc[bb[cccqqqqqqqqccc333bb]ccc]cc	chr20:61569504-61569749(+)$1	245	154	193	19.1311
$eeeee[a"""eeeeeqqqqqqqqeeeee333a22eeee	chr16:733993-734331(-)$1	338	247	286	16.3405
a$$$$$ccc[bb[bbqqqqqqqqbb]bbccca22a]eee	chr19:10305351-10305592(-)$1	241	94	133	14.1724
eeeecccffffff[bbqqqqqqqqbb]ffffff333ccc	chr17:33895379-33895657(+)$1	278	112	151	15.1623
========$$$$$cccqqqqqqqqccc55555=======	chr8:25246304-25246568(+)$1	264	151	190	15.7992
!!bb####gggggggrrrrrrrrrggggggg333bb22b	chr5:132160721-132160995(-)$1	274	116	155	13.5844
eeeeeddddbb[ddddqqqqqqqqdddd22bb]dddd]e	chr2:120436686-120436911(+)$1	225	70	109	14.4711
b!!ccc"""ffffffssssssssssffffff4444ccc2	chr9:134382771-134383004(+)$1	233	177	216	14.1541
gggggbb[gggggggqqqqqqqqgggggggbb]gggggg	chr1:55505606-55505872(+)$1	266	93	132	15.0473
ffffff"""ccc[bbqqqqqqqqbb]ccc4444ffffff	chr12:53428384-53428637(+)$1	253	90	129	15.1125
::gggggggccc!!bbqqqqqqqqbb22ccc]ggggggg	chr2:70457846-70458115(-)$1	269	121	160	15.1006
:===========[cccqqqqqqqqccc]===========	chr3:58139255-58139502(+)$1	247	106	145	19.5746
d[ccc####ccc[cccqqqqqqqqcccccc4444cccdd	chr22:23637194-23637481(+)$1	287	138	177	18.8736
eee####iiiiiiiiiqqqqqqqqiiiiiiiii4444ee	chr12:26784664-26784909(-)$1	245	107	146	17.6162
"eeeee[a!!ddddssssssssssdddd333a]eeeee]	chr21:47980568-47980838(+)$1	270	75	114	14.5535
e####ccc[ddddcccqqqqqqqqccc]ddddccc4444	chr14:23447408-23447668(-)$1	260	150	189	17.3769
fff####cccwwwwwwwwwwwwwwccc4444ffffff>>	chr2:175978585-175978866(-)$1	281	160	199	14.5759
==========ffffffqqqqqqqqffffff>>>>>>>>>	chr14:102467912-102468155(+)$1	243	26	65	15.4418
2eeeee:::ccc[cccqqqqqqqqccc]ccc:ggggggg	chr20:43530384-43530609(+)$1	225	158	197	13.8215
[ccc"""gggggggssssssssssggggggg22ccc]bb	chr15:75091165-75091428(+)$1	263	54	93	14.2657
$$ccc$$$$$ffffffqqqqqqqqffffffccc333fff	chr1:113242844-113243099(+)$1	255	202	241	16.0028
bb!!eeeee!!cccssssssssssccc]eeeee22bb]d	chr16:28124063-28124327(-)$1	264	121	160	13.2184
ff!!a[dddd[bb!!cccooooooccc333bb]dddda2	chr17:2280011-2280244(+)$1	233	67	106	10.0641
b[iiiiiiiii[ddddqqqqqqqqdddd22iiiiiiiii	chr4:83812099-83812323(-)$1	224	163	202	17.8981

#otherMatches

#Seq PSSM
ccuuuuggccauuguaaauaacacugcuaugaacauggg	chr7:138763159-138763422(-)$1	263	159	198	17.4650
GCGUGCUGCCGCUCGAGGAGGCGGUGGAGGGCUUCAAGG	chr6:28890845-28891135(-)$1	290	108	147	17.5901
UGCGUGAGCUGGAGCGCUAUGUCACCUCCUGUUUGCGGA	chr19:15365957-15366212(-)$1	255	48	87	17.2231
GUGUUGUUUUCCAGACCUUUUGAUUGAUGGAUGAUAGUA	chr10:133761188-133761447(+)$1	259	218	257	14.9947
GGUGUGUGGCCUGGGUGGGCAUUUCCCACACCAUCCCCU	chr6:31746627-31746841(-)$1	214	97	136	12.4105
CCACUACUCCAACACUUUCAUUUUUGUUCUGAGUGGUGG	chr2:102490606-102490845(+)$1	239	120	159	15.8105
CCUCCUCGGGCUCCGAGUGGCCUGUGGGAGGCUGCAGGA	chrX:153226832-153227098(-)$1	266	112	151	15.1655
CCUCAGCCCCCUACCCCUCCCCUCGGGACGGGCGCGGGG	chr9:130160004-130160276(+)$1	272	43	82	17.8402
GUACUACUACCUCCAAAUACGUUCUUGCUGGUAGUGGCG	chrX:70753047-70753342(+)$1	295	15	54	14.1257
UGCGCAUGGGGCGUGGAAGGGCGCCCAGCCCCGUGCACU	chr2:21266223-21266466(-)$1	243	92	131	17.6447
GGUGCCGGUGUAGGAAAAGGAAGGACGAUAGCAGGAAUC	chr12:123815626-123815902(-)$1	276	34	73	13.3980
UUUGUCCAAAGUGGUGCCGUUUUCUCACUAUGCUGGGAC	chr6:31668585-31668830(-)$1	245	35	74	12.6846
UGUUACCCUCAUAUUUUCAGCACUAAUUUUAGGGUGAGU	chr16:18896715-18896976(-)$1	261	81	120	16.1281
CUGCCAUGAGCUGCCCCACGAACUGGGUAGGAAUGGCAG	chr12:56630696-56630927(+)$1	231	73	112	17.7927
GCCCCUUACCCGGGGGUCGGUCACUGCGCGGUUGGGAGG	chr11:66384417-66384681(+)$1	264	171	210	14.9373
UUUGUAGGCCGUGCACAAAAGAAAGUAGAACGGCAGGCA	chr1:40034331-40034592(-)$1	261	26	65	15.2943
GGAAGUAAAAUGCUCAGCGUUCAUGUGAGUAUGUUUAAC	chr1:52255101-52255426(-)$1	325	163	202	13.6830
UGGGCCUCAGAGCCGGGACAGUGGGGUGGUGGGCAGCAG	chr1:1256221-1256478(-)$1	257	163	202	14.8654
AUCCCUCUCAACAUCCAGGUACUAGGGGCUAAGACGGGA	chr1:27212318-27212572(-)$1	254	91	130	16.4720
CAGGUAGGCCCACCCACAUUACUAUGGAAGCCACCUAUA	chr21:34901018-34901271(-)$1	253	113	152	17.2919
CUGCGGACUAUCUCUCCCCUCUGUGAGUGAUGCCGGGGC	chr16:720962-721236(+)$1	274	219	258	17.7059
GGCUCCAGCGUGGUGUCCAUGUCCACACUGUACGUGCUG	chr11:61547631-61547908(+)$1	277	54	93	14.8216
CACCUGAGGGUGCUGAGCCAACAUCCCCACAGUUGAGGC	chr16:720514-720746(+)$1	232	128	167	11.7416
CUACCAAGUUUGAAGGGGACCAUGAGUCUUCAGGCUGGA	chr8:42025202-42025461(+)$1	259	20	59	14.2670
AUUCCAUGUAAGUGUCAGCCCCAAGACACCUUACUGGCC	chr1:3563088-3563336(-)$1	248	100	139	15.8761
CGCGGGGGGCACCCGGAGUGGGGCGGGGACUCACCCUUU	chr17:79650410-79650773(-)$1	363	81	120	15.9645
UUUAGAAGCUGGGGCAGAUCCUAAUGCAACUACUUUAGA	chr2:53977825-53978079(-)$1	254	98	137	20.2147
GCAGAGCUCAGCCCCCUCCACAUCGGGGCUGGGCCGGUG	chrX:39921185-39921441(-)$1	256	135	174	14.9447
AAGGGGUGGAGCCCUUUCUGUUAUGGGGUGCUCuucuuu	chr2:174231069-174231302(+)$1	233	171	210	16.0716
ggccgggcgggcAGGCGGGAUGUGGCCGGGGUGCGCGCC	chr20:61569504-61569749(+)$1	245	154	193	19.1311
ACGCGGAGUUCGUGCAGCAGUACGUGCGCCCCUGAUCGC	chr16:733993-734331(-)$1	338	247	286	16.3405
GCGGUAGGUACCAUGGGGGGGAACACGGACUCAGGGGGA	chr19:10305351-10305592(-)$1	241	94	133	14.1724
AUGGUCUUUACCUACGUGAAAUGUUGGAGGUAAGUCGGA	chr17:33895379-33895657(+)$1	278	112	151	15.1623
CUGUCAGGCAAGGACUAGAUUUUCAGUGAGAACUUGAUG	chr8:25246304-25246568(+)$1	264	151	190	15.7992
AGGAGGGACCAUACCCAUUGUCCAGGUAUGGAAGUCAGG	chr5:132160721-132160995(-)$1	274	116	155	13.5844
CCGCCCUGCCGCGCGCACAUGUAGGCGUUCCGAGCGGCG	chr2:120436686-120436911(+)$1	225	70	109	14.4711
UGACCCUUUGGCCCGGAAGAUCACAUGGGCUUGGUGGGC	chr9:134382771-134383004(+)$1	233	177	216	14.1541
UUCCACCGCUGCGCCAAGGUGCGGGUGUAGGGAUGGGAG	chr1:55505606-55505872(+)$1	266	93	132	15.0473
UCCACCACAUCUAGCAGAAGUAAGUCAGACCAGGGUGGG	chr12:53428384-53428637(+)$1	253	90	129	15.1125
UCCCACAGACAGCUGGAAAUGAUCCCUAUUGUUUUGUGG	chr2:70457846-70458115(-)$1	269	121	160	15.1006
GUCCCAGGUGAGCAUUGCGGGCAGGAUUUUCACUUGGGA	chr3:58139255-58139502(+)$1	247	106	145	19.5746
CCAGGUCCAGGUGAGGCAGCCAUCCCUACCCUCCCCUGC	chr22:23637194-23637481(+)$1	287	138	177	18.8736
GCAGGUGUGUUGCCUAACAGAAGCUAGGUGACAAAGAUG	chr12:26784664-26784909(-)$1	245	107	146	17.6162
GGCCCGGACCCCACAACCGUCUACGUGGACAUGCGGGCA	chr21:47980568-47980838(+)$1	270	75	114	14.5535
CCCUGCCCACAUACACACUUACAAGUGCUAUGGGGAACA	chr14:23447408-23447668(-)$1	260	150	189	17.3769
UAUUUAAAUCUCUAUCGCAAAACUGAUCUUUGUAGUCAG	chr2:175978585-175978866(-)$1	281	160	199	14.5759
GUGGCUGGGAUGACCUCUUCAACAAGGUCAAAGAACACA	chr14:102467912-102468155(+)$1	243	26	65	15.4418
ACUCUCAAAACAGCUUAUGAGAGAGAGGUGUCUGAAUAU	chr20:43530384-43530609(+)$1	225	158	197	13.8215
AGCCAACUACGUCCAGAAGCGGGAGGGCGUGAAGGCGGG	chr15:75091165-75091428(+)$1	263	54	93	14.2657
GCCAUGACUACCUCCCCCAGGAGCGGGAGGGUGAAGGGG	chr1:113242844-113243099(+)$1	255	202	241	16.0028
CCCGGGGUCCCCAGGGCUGUGUGACUGAGACCCAAGGAA	chr16:28124063-28124327(-)$1	264	121	160	13.2184
CUGGCGCCUCUCCUGGUCACCCUCGACAAUGGUGAGGGA	chr17:2280011-2280244(+)$1	233	67	106	10.0641
GCCUGGGUCUCCGCUGCCCCGCACCAGCCUGAGGCCCGG	chr4:83812099-83812323(-)$1	224	163	202	17.8981

#DB
(((..((..(((.(((........))).)))..)).)))	chr7:138763159-138763422(-)$1	1	159	198	17.4650
.(.((..(((.(((.(........).))))))..)).).	chr6:28890845-28891135(-)$1	1	108	147	17.5901
(.(((((((.((((.(........))))).))))))).)	chr19:15365957-15366212(-)$1	1	48	87	17.2231
((((((((.((((..............)))).)))))))	chr10:133761188-133761447(+)$1	1	218	257	14.9947
((.(.((((..((((.........))))..)))).))))	chr6:31746627-31746841(-)$1	1	97	136	12.4105
(((((((((.((((..........))))..)))))))))	chr2:102490606-102490845(+)$1	1	120	159	15.8105
(((((((((.((((.(........).)))).))).))))	chrX:153226832-153227098(-)$1	1	112	151	15.1655
((.(.((((....(((........)))..))))).))))	chr9:130160004-130160276(+)$1	1	43	82	17.8402
...((((((((..(((........)))..)))))))).)	chrX:70753047-70753342(+)$1	1	15	54	14.1257
.(.(((((((((.(((........)))))))))))).).	chr2:21266223-21266466(-)$1	1	92	131	17.6447
..(((...(((.............)))...)))...)))	chr12:123815626-123815902(-)$1	1	34	73	13.3980
(.(((((...((((((.........))))))....))))	chr6:31668585-31668830(-)$1	1	35	74	12.6846
..(((((((...(((.........)))...)))))))..	chr16:18896715-18896976(-)$1	1	81	120	16.1281
(((((((...((((((........))))))..)))))))	chr12:56630696-56630927(+)$1	1	73	112	17.7927
.(((((.(((((.((........)).)).))).))).))	chr11:66384417-66384681(+)$1	1	171	210	14.9373
(((((..(((((.(((........)).).)))))..)))	chr1:40034331-40034592(-)$1	1	26	65	15.2943
((((((((((((((((.........))))))).))).))	chr1:52255101-52255426(-)$1	1	163	202	13.6830
((.(((.((..(((..........)))..)))))..)))	chr1:1256221-1256478(-)$1	1	163	202	14.8654
.(((((((.....(((........)))....))).))))	chr1:27212318-27212572(-)$1	1	91	130	16.4720
.((((.(((....(((........)))..))))))))).	chr21:34901018-34901271(-)$1	1	113	152	17.2919
((.(((.(.(((.(((........))).))))))).)).	chr16:720962-721236(+)$1	1	219	258	17.7059
(((((..(((((((((........)))))..))))...)	chr11:61547631-61547908(+)$1	1	54	93	14.8216
(..(((.(((.(.((......)).)))).)))....)))	chr16:720514-720746(+)$1	1	128	167	11.7416
((.(((.(((((((((..........)))))))))))))	chr8:42025202-42025461(+)$1	1	20	59	14.2670
...(((.(((((((((........)))).))))))))..	chr1:3563088-3563336(-)$1	1	100	139	15.8761
(((((((((..((((........))))..))).)))...	chr17:79650410-79650773(-)$1	1	81	120	15.9645
((((((.(..(..(((........)))..)..)))))))	chr2:53977825-53978079(-)$1	1	98	137	20.2147
((.(.((((((((((.........))))))))))).)).	chrX:39921185-39921441(-)$1	1	135	174	14.9447
((((((.(((((((((........)))).))))).))))	chr2:174231069-174231302(+)$1	1	171	210	16.0716
((.((((((.((.(((........)))...)).))).))	chr20:61569504-61569749(+)$1	1	154	193	19.1311
.(((((.(...(((((........)))))...)..))))	chr16:733993-734331(-)$1	1	247	286	16.3405
(.....(((.((.((........)).))))))..).)))	chr19:10305351-10305592(-)$1	1	94	133	14.1724
(((((((((((((.((........)).))))))...)))	chr17:33895379-33895657(+)$1	1	112	151	15.1623
((((((((.....(((........))).....)))))))	chr8:25246304-25246568(+)$1	1	151	190	15.7992
..((....(((((((.........)))))))...))..)	chr5:132160721-132160995(-)$1	1	116	155	13.5844
(((((((((((.((((........))))..)).)))).)	chr2:120436686-120436911(+)$1	1	70	109	14.4711
(..(((...((((((..........))))))....))).	chr9:134382771-134383004(+)$1	1	177	216	14.1541
(((((((.(((((((........))))))))).))))))	chr1:55505606-55505872(+)$1	1	93	132	15.0473
((((((...(((.((........)).)))....))))))	chr12:53428384-53428637(+)$1	1	90	129	15.1125
..((((((((((..((........))..))).)))))))	chr2:70457846-70458115(-)$1	1	121	160	15.1006
.(((((((((((.(((........))).)))))))))))	chr3:58139255-58139502(+)$1	1	106	145	19.5746
(.(((....(((.(((........))))))....)))))	chr22:23637194-23637481(+)$1	1	138	177	18.8736
(((....(((((((((........)))))))))....))	chr12:26784664-26784909(-)$1	1	107	146	17.6162
.(((((.(..((((..........))))...).))))).	chr21:47980568-47980838(+)$1	1	75	114	14.5535
(....(((.(((((((........))).)))))))....	chr14:23447408-23447668(-)$1	1	150	189	17.3769
(((....(((..............)))....))))))..	chr2:175978585-175978866(-)$1	1	160	199	14.5759
((((((((((((((((........)))))).........	chr14:102467912-102468155(+)$1	1	26	65	15.4418
.)))))...(((.(((........))).))).(((((((	chr20:43530384-43530609(+)$1	1	158	197	13.8215
.(((...(((((((..........)))))))..))).))	chr15:75091165-75091428(+)$1	1	54	93	14.2657
..(((.....((((((........)))))))))...)))	chr1:113242844-113243099(+)$1	1	202	241	16.0028
((..(((((..(((..........))).)))))..)).)	chr16:28124063-28124327(-)$1	1	121	160	13.2184
((..(.((((.((..(((......)))...)).))))).	chr17:2280011-2280244(+)$1	1	67	106	10.0641
(.(((((((((.((((........))))..)))))))))	chr4:83812099-83812323(-)$1	1	163	202	17.8981

#PSSM
e : 0.15	= : 0.09	b : 0.09	c : 0.07	[ : 0.05	d : 0.05	g : 0.05	: : 0.05	! : 0.05	$ : 0.05	f : 0.05	a : 0.03	i : 0.03	h : 0.01	% : 0.01	& : 0.01	# : 0.01	" : 0.01	2 : 0.01	
e : 0.18	= : 0.11	! : 0.09	b : 0.09	[ : 0.07	c : 0.07	d : 0.05	g : 0.05	$ : 0.05	f : 0.05	a : 0.03	i : 0.01	h : 0.01	% : 0.01	: : 0.01	# : 0.01	
e : 0.18	[ : 0.16	= : 0.11	g : 0.09	c : 0.09	! : 0.07	b : 0.05	i : 0.03	d : 0.03	$ : 0.03	f : 0.03	h : 0.01	% : 0.01	# : 0.01	
c : 0.26	e : 0.15	= : 0.11	g : 0.09	! : 0.05	i : 0.05	a : 0.05	# : 0.05	b : 0.03	h : 0.03	d : 0.03	$ : 0.01	f : 0.01	
c : 0.26	e : 0.15	= : 0.11	g : 0.09	# : 0.07	i : 0.05	[ : 0.05	h : 0.03	d : 0.03	! : 0.01	b : 0.01	$ : 0.01	f : 0.01	" : 0.01	a : 0.01	
c : 0.24	= : 0.13	e : 0.09	g : 0.07	# : 0.07	! : 0.05	i : 0.05	d : 0.05	b : 0.03	h : 0.03	" : 0.03	[ : 0.03	$ : 0.03	f : 0.01	
[ : 0.18	c : 0.16	= : 0.11	d : 0.07	" : 0.07	# : 0.07	! : 0.05	g : 0.05	i : 0.05	b : 0.03	e : 0.03	h : 0.01	: : 0.01	$ : 0.01	
c : 0.22	i : 0.09	d : 0.09	= : 0.09	" : 0.09	g : 0.07	e : 0.07	a : 0.07	# : 0.03	! : 0.01	h : 0.01	b : 0.01	f : 0.01	[ : 0.01	: : 0.01	$ : 0.01	
c : 0.20	g : 0.11	d : 0.09	" : 0.09	= : 0.07	i : 0.07	e : 0.07	! : 0.05	[ : 0.05	$ : 0.05	h : 0.01	b : 0.01	f : 0.01	# : 0.01	: : 0.01	
c : 0.20	! : 0.11	[ : 0.09	d : 0.07	i : 0.07	" : 0.07	g : 0.07	e : 0.05	$ : 0.05	= : 0.05	# : 0.03	f : 0.03	h : 0.01	b : 0.01	
c : 0.13	d : 0.13	f : 0.11	! : 0.07	i : 0.07	b : 0.07	g : 0.07	[ : 0.05	e : 0.05	# : 0.03	" : 0.03	$ : 0.03	= : 0.03	h : 0.01	a : 0.01	w : 0.01	
c : 0.16	d : 0.15	f : 0.11	e : 0.09	b : 0.07	g : 0.07	i : 0.05	# : 0.03	! : 0.03	$ : 0.03	= : 0.03	[ : 0.03	v : 0.01	" : 0.01	a : 0.01	w : 0.01	
[ : 0.22	d : 0.22	f : 0.11	c : 0.07	g : 0.07	! : 0.05	# : 0.03	$ : 0.03	e : 0.03	i : 0.03	v : 0.01	= : 0.01	w : 0.01	b : 0.01	
c : 0.33	d : 0.18	f : 0.09	b : 0.07	g : 0.07	w : 0.03	e : 0.03	i : 0.03	! : 0.03	v : 0.01	a : 0.01	= : 0.01	[ : 0.01	
c : 0.28	b : 0.13	d : 0.11	s : 0.09	f : 0.09	[ : 0.05	g : 0.05	w : 0.03	e : 0.03	i : 0.03	v : 0.01	= : 0.01	! : 0.01	
c : 0.28	s : 0.11	q : 0.09	r : 0.07	f : 0.07	d : 0.07	a : 0.05	b : 0.05	w : 0.03	e : 0.03	i : 0.03	v : 0.01	g : 0.01	o : 0.01	
q : 0.66	s : 0.13	r : 0.11	w : 0.03	v : 0.01	o : 0.01	c : 0.01	
q : 0.66	s : 0.13	r : 0.11	w : 0.03	v : 0.01	o : 0.01	c : 0.01	
q : 0.66	s : 0.13	r : 0.11	w : 0.03	o : 0.03	v : 0.01	
q : 0.66	s : 0.13	r : 0.11	w : 0.03	o : 0.03	v : 0.01	
q : 0.66	s : 0.13	r : 0.11	w : 0.03	o : 0.03	v : 0.01	
q : 0.66	s : 0.13	r : 0.11	w : 0.03	v : 0.01	b : 0.01	o : 0.01	
q : 0.66	s : 0.13	r : 0.11	w : 0.03	v : 0.01	b : 0.01	o : 0.01	
q : 0.56	s : 0.13	r : 0.11	b : 0.05	w : 0.03	v : 0.01	] : 0.01	d : 0.01	g : 0.01	o : 0.01	
c : 0.37	d : 0.15	b : 0.11	a : 0.07	f : 0.05	g : 0.05	r : 0.03	e : 0.03	s : 0.03	w : 0.01	= : 0.01	i : 0.01	
c : 0.39	d : 0.16	] : 0.09	f : 0.09	g : 0.07	b : 0.05	e : 0.03	w : 0.01	s : 0.01	= : 0.01	i : 0.01	
c : 0.43	d : 0.18	f : 0.09	g : 0.07	b : 0.03	] : 0.03	e : 0.03	i : 0.03	w : 0.01	= : 0.01	2 : 0.01	
d : 0.18	2 : 0.13	] : 0.11	f : 0.11	c : 0.07	3 : 0.07	g : 0.07	i : 0.05	b : 0.03	4 : 0.03	e : 0.03	a : 0.01	= : 0.01	5 : 0.01	
2 : 0.18	c : 0.15	f : 0.11	3 : 0.09	] : 0.09	d : 0.07	g : 0.07	i : 0.05	e : 0.05	4 : 0.03	= : 0.03	5 : 0.01	
c : 0.20	3 : 0.11	f : 0.11	2 : 0.09	d : 0.07	e : 0.07	g : 0.07	i : 0.05	4 : 0.05	= : 0.03	] : 0.01	h : 0.01	b : 0.01	a : 0.01	5 : 0.01	
c : 0.22	g : 0.09	b : 0.09	d : 0.07	i : 0.07	e : 0.07	4 : 0.07	= : 0.05	f : 0.05	2 : 0.05	3 : 0.03	] : 0.01	h : 0.01	5 : 0.01	> : 0.01	
c : 0.18	2 : 0.07	d : 0.07	i : 0.07	4 : 0.07	e : 0.07	b : 0.07	g : 0.05	= : 0.05	a : 0.05	] : 0.03	3 : 0.03	f : 0.03	h : 0.01	5 : 0.01	> : 0.01	: : 0.01	
] : 0.15	c : 0.13	i : 0.09	= : 0.09	4 : 0.09	2 : 0.07	g : 0.07	d : 0.07	e : 0.07	a : 0.03	f : 0.03	h : 0.01	3 : 0.01	> : 0.01	
c : 0.18	= : 0.11	g : 0.09	d : 0.09	4 : 0.09	2 : 0.07	i : 0.07	3 : 0.07	e : 0.07	f : 0.03	b : 0.01	a : 0.01	h : 0.01	> : 0.01	
c : 0.16	g : 0.09	] : 0.09	= : 0.09	i : 0.07	4 : 0.07	2 : 0.07	d : 0.07	b : 0.05	3 : 0.05	a : 0.03	f : 0.03	h : 0.01	e : 0.01	> : 0.01	
c : 0.16	g : 0.13	= : 0.09	] : 0.07	3 : 0.07	d : 0.07	b : 0.05	i : 0.05	e : 0.05	4 : 0.05	h : 0.03	2 : 0.03	f : 0.03	a : 0.01	> : 0.01	
g : 0.13	e : 0.11	] : 0.11	c : 0.11	= : 0.09	i : 0.07	d : 0.07	b : 0.07	4 : 0.05	f : 0.05	h : 0.03	3 : 0.01	2 : 0.01	> : 0.01	
e : 0.13	c : 0.11	= : 0.09	g : 0.09	b : 0.09	] : 0.07	i : 0.07	a : 0.05	d : 0.05	2 : 0.03	3 : 0.03	4 : 0.03	f : 0.03	> : 0.03	h : 0.01	
e : 0.16	= : 0.09	g : 0.09	] : 0.07	i : 0.07	d : 0.07	c : 0.07	2 : 0.05	b : 0.05	h : 0.03	: : 0.03	4 : 0.03	f : 0.03	> : 0.03	a : 0.01	3 : 0.01	

#score	825.7862054853332
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_CDS_m1_run2.txt

#BEAR
cc!!ddddtttttttttttdddd4444c	chr7:91623926-91624189(+)$1	263	60	88	21.8353
ffffffvvvvvvvvvvvvvffffffccc	chr5:37048659-37048873(+)$1	214	122	150	22.8091
dddyyyyyyyyyyyyyyyydddd]ffff	chr12:80226028-80226287(-)$1	259	161	189	21.4984
d[ddddwwwwwwwwwwwwwwdddddddd	chrX:70680488-70680744(+)$1	256	60	88	22.3072
+++cccwwwwwwwwwwwwwwccc>>>>>	chr5:98205360-98205598(-)$1	238	60	88	20.8991
:ffffffuuuuuuuuuuuuffffffhhh	chr3:180322167-180322446(+)$1	279	43	71	22.5088
h[cccyyyyyyyyyyyyyyyyccc]hhh	chr12:123005839-123006063(-)$1	224	79	107	23.3731
[ffffffvvvvvvvvvvvvvffffff]b	chr9:131020651-131020894(-)$1	243	128	156	22.8501
hhhh[bbuuuuuuuuuuuubbhhhhhhh	chr11:71184229-71184515(+)$1	286	157	185	21.5253
ccc[cccuuuuuuuuuuuuccc22ccc]	chr1:104085817-104086073(+)$1	256	126	154	24.1129
gg[ddddvvvvvvvvvvvvvddddgggg	chr20:34317301-34317536(-)$1	235	71	99	23.0960
iiiicccuuuuuuuuuuuuccc]iiiii	chr1:193099221-193099474(+)$1	253	203	231	24.5905
cffffffuuuuuuuuuuuuffffff22c	chr3:9486815-9487046(+)$1	231	13	41	23.6396
cc[ddddtttttttttttdddd]ccc]e	chr3:47677411-47677635(-)$1	224	169	197	21.6577
ffffffxxxxxxxxxxxxxxxffffff]	chr5:65342168-65342433(+)$1	265	228	256	19.8834
[eeeeexxxxxxxxxxxxxxxeeeee]a	chr8:41615517-41615744(-)$1	227	30	58	19.6256
ggggggguuuuuuuuuuuugggggggff	chr9:134334449-134334670(+)$1	221	95	123	23.9594
ggggggguuuuuuuuuuuuggggggg]c	chr17:2185848-2186150(-)$1	302	54	82	24.2087
gg!!ddddtttttttttttddddggggg	chrX:129149931-129150219(+)$1	288	133	161	22.2979
bb[cccwwwwwwwwwwwwwwcccbbggg	chrX:30849428-30849753(-)$1	325	273	301	23.0830
d[fffffftttttttttttffffff]dd	chr19:49656594-49656866(-)$1	272	94	122	21.5393
===dddduuuuuuuuuuuudddd22===	chr1:28128087-28128332(+)$1	245	146	174	23.5525
!ffffffuuuuuuuuuuuuffffff22b	chr2:109421305-109421550(+)$1	245	207	235	23.4729
bb:ddddtttttttttttddddeeeee!	chr3:170811576-170811820(-)$1	244	70	98	19.7561
i[cccyyyyyyyyyyyyyyyyccciiii	chr1:31764660-31764951(-)$1	291	217	245	23.9901
+eeeeewwwwwwwwwwwwwweeeeeddd	chr2:27898353-27898615(+)$1	262	164	192	21.7803
eee[cccuuuuuuuuuuuuccc]eeeee	chr1:22032154-22032386(-)$1	232	31	59	23.9142
ffffffxxxxxxxxxxxxxxxffffff]	chr5:65342233-65342466(+)$1	233	163	191	19.8834
:eeeeevvvvvvvvvvvvveeeeea[ff	chr5:147804984-147805277(+)$1	293	119	147	21.2177
f!!ddddvvvvvvvvvvvvvddddffff	chr19:10794492-10794698(+)$1	206	11	39	22.6117
!eeeeewwwwwwwwwwwwwweeeee22g	chr2:48046029-48046296(-)$1	267	10	38	22.7769
dffffffvvvvvvvvvvvvvffffff::	chr14:21831316-21831584(-)$1	268	173	201	21.0889
ggggggxxxxxxxxxxxxxxxggggggg	chr2:9666139-9666423(-)$1	284	23	51	20.5692
b[a[ccctttttttttttccc]a]bb]a	chr16:1779408-1779679(+)$1	271	181	209	21.8115
cc[ddddvvvvvvvvvvvvvdddd22cc	chr17:36871809-36872087(+)$1	278	68	96	22.7173
g[cccyyyyyyyyyyyyyyyycccgggg	chr4:56283880-56284147(+)$1	267	193	221	24.1399
ddddyyyyyyyyyyyyyyyydddd22cc	chr1:184859174-184859457(-)$1	283	19	47	22.3267
:gggggggtttttttttttggggggg::	chr19:5711841-5712099(-)$1	258	148	176	19.4866
fffff[auuuuuuuuuuuua]ffffffe	chr8:30948349-30948558(+)$1	209	137	165	24.0378
ggggggguuuuuuuuuuuuggggggg:E	chrX:151127407-151127655(-)$1	248	208	236	22.3641
!!cccyyyyyyyyyyyyyyyyccc22ee	chr12:104340321-104340545(+)$1	224	62	90	23.5025
c!!cccwwwwwwwwwwwwwwccc333cc	chr14:104141937-104142190(+)$1	253	175	203	24.2542
ddd[bbuuuuuuuuuuuubb]dddd]ff	chr3:160254481-160254704(-)$1	223	37	65	21.2630
:ddddwwwwwwwwwwwwwwdddd:eeee	chr2:71650210-71650459(+)$1	249	68	96	20.1842
EEEcccwwwwwwwwwwwwwwccc:ccco	chr1:171510807-171511066(+)$1	259	29	57	19.7874
dd:cccvvvvvvvvvvvvvcccbba"""	chr10:120809341-120809582(-)$1	241	83	111	20.8336
eeeeeyyyyyyyyyyyyyyyyeeeeebb	chr7:151065774-151066019(+)$1	245	168	196	22.4536
ggggggwwwwwwwwwwwwwwggggggg:	chr21:33075977-33076195(-)$1	218	184	212	23.0144
ccc!!ccctttttttttttccc>>>>>>	chr5:179151580-179151813(+)$1	233	181	209	21.5168
ccc[cccuuuuuuuuuuuuccc]ccc::	chr11:61644123-61644351(-)$1	228	133	161	22.9509
ggg[ddddtttttttttttdddd]gggg	chr14:77571921-77572251(+)$1	330	213	241	22.3114
ggggggxxxxxxxxxxxxxxxggggggg	chr11:47746085-47746381(-)$1	296	3	31	20.5692
f[fffffftttttttttttfffffffff	chr15:89804952-89805209(+)$1	257	193	221	21.6441
cc"""bbvvvvvvvvvvvvvbb4444cc	chr2:95770274-95770507(-)$1	233	57	85	21.8482
h[cccyyyyyyyyyyyyyyyyccc]hhh	chr6:47576891-47577145(+)$1	254	219	247	23.3731
"ffffffuuuuuuuuuuuuffffff]bb	chr6:7247231-7247505(+)$1	274	134	162	23.3847

#otherMatches

#Seq PSSM
UCACUGCUAAUUUACAACAAGCAAGAAG	chr7:91623926-91624189(+)$1	263	60	88	21.8353
GUGAAAAUAUAUUUUUAAAUUUCAUAGC	chr5:37048659-37048873(+)$1	214	122	150	22.8091
UACGGAAGUUUUAAAGUAAGUAUUGUUU	chr12:80226028-80226287(-)$1	259	161	189	21.4984
GCUUCAGGAGAACACAAGGAUGGACAUG	chrX:70680488-70680744(+)$1	256	60	88	22.3072
AAGUCUAUAAAAGUGAAAGAGGAAAUAA	chr5:98205360-98205598(-)$1	238	60	88	20.8991
UGUUAGUUUACAUUUUCUUACUAAUCAG	chr3:180322167-180322446(+)$1	279	43	71	22.5088
UAUUCACAGAUAAUGAAGGAAGAAAACA	chr12:123005839-123006063(-)$1	224	79	107	23.3731
AUCCCGGAGGACCUGGAGAGCCGGGAAG	chr9:131020651-131020894(-)$1	243	128	156	22.8501
UGUGAGGAGCUCUGGACACCCCACAGGU	chr11:71184229-71184515(+)$1	286	157	185	21.5253
CAGAUGUAUUUGACCAACCACAACCUGU	chr1:104085817-104086073(+)$1	256	126	154	24.1129
UGUGUUUCCUUUUUAGCUCCGGACCAAA	chr20:34317301-34317536(-)$1	235	71	99	23.0960
uccccuaugaaauaaugauuagagggaa	chr1:193099221-193099474(+)$1	253	203	231	24.5905
CCUCCAAGCCUACCCACCAUUGGAGCAG	chr3:9486815-9487046(+)$1	231	13	41	23.6396
AGGCACUGGAGAAAUGAAGGUGGUUUAU	chr3:47677411-47677635(-)$1	224	169	197	21.6577
AUAAGAACUUUCAAUUUAAUAUUUUAUU	chr5:65342168-65342433(+)$1	265	228	256	19.8834
GGGGUGGAGAAGUCAUUAAUACACCCAG	chr8:41615517-41615744(-)$1	227	30	58	19.6256
UCCUAGGAACAGUUGGGACCCUAGGAGG	chr9:134334449-134334670(+)$1	221	95	123	23.9594
CGGAAAGGAAAGAAGUCUACUUUCCGGC	chr17:2185848-2186150(-)$1	302	54	82	24.2087
AGCCAGAUGAUGUGACGGAAUCUCUGCC	chrX:129149931-129150219(+)$1	288	133	161	22.2979
CUCGGGACUCUAUUCAUCCACCCAGCCU	chrX:30849428-30849753(-)$1	325	273	301	23.0830
gaggggcuggaggaagaugagCCCCGCU	chr19:49656594-49656866(-)$1	272	94	122	21.5393
GCAGCCUUAAACAAUUUCCAGGCUGUGC	chr1:28128087-28128332(+)$1	245	146	174	23.5525
UAUUUUAUAUAUAACAAAUUAAAGUCAG	chr2:109421305-109421550(+)$1	245	207	235	23.4729
GGAGCUCCAGGCAGCAACGAGCAGUACA	chr3:170811576-170811820(-)$1	244	70	98	19.7561
CAGCUUCUCAUACUAAUUCUUGGCGUCC	chr1:31764660-31764951(-)$1	291	217	245	23.9901
GCUGGCAAGAUUGAUGAGAAGCCAGAGA	chr2:27898353-27898615(+)$1	262	164	192	21.7803
UCUCCUCCUUGUCUCAUUUGAGUAGAAA	chr1:22032154-22032386(-)$1	232	31	59	23.9142
AUAAGAACUUUCAAUUUAAUAUUUUAUU	chr5:65342233-65342466(+)$1	233	163	191	19.8834
UGUAGUAAAACCAACCUCAAUUACUGUU	chr5:147804984-147805277(+)$1	293	119	147	21.2177
CGUGCAUGCUCUGGGAACAAAUGUGUGG	chr19:10794492-10794698(+)$1	206	11	39	22.6117
GGGGGUAACAGACUAUAAACGCCUUGCU	chr2:48046029-48046296(-)$1	267	10	38	22.7769
UACUUACAGAAAGAACAAGAGUAAGUUU	chr14:21831316-21831584(-)$1	268	173	201	21.0889
UUAAUAGUGCAUACAAAUUCAUAUUAGA	chr2:9666139-9666423(-)$1	284	23	51	20.5692
cgcggcgggguggagguacgcggggcgc	chr16:1779408-1779679(+)$1	271	181	209	21.8115
CUUCCUCUUCCUCCCACCACGAGGCCAG	chr17:36871809-36872087(+)$1	278	68	96	22.7173
UCAAGCUCUUACAUUAACAUUCUUAGCA	chr4:56283880-56284147(+)$1	267	193	221	24.1399
UGUCUAUUUGUUAUAUCCCUGAUAUUUU	chr1:184859174-184859457(-)$1	283	19	47	22.3267
AGCCCCGCAGGAAGUCAAAGCGGGGCAA	chr19:5711841-5712099(-)$1	258	148	176	19.4866
CACCCUCUUUUUUUCUUCUGUGGGUGAA	chr8:30948349-30948558(+)$1	209	137	165	24.0378
UUCUGCUACCAUGUGACUAGGCAGAAAA	chrX:151127407-151127655(-)$1	248	208	236	22.3641
AUCUCUUAACAGUUACUAUGCGAGUCAG	chr12:104340321-104340545(+)$1	224	62	90	23.5025
UGGCUGGAAAAACCAAAAAGCAGGGGGA	chr14:104141937-104142190(+)$1	253	175	203	24.2542
aggugauuuuaaaaauauuuuccuuuaa	chr3:160254481-160254704(-)$1	223	37	65	21.2630
AAGGGGCAGAAAUUAUUAACCCUAAAAC	chr2:71650210-71650459(+)$1	249	68	96	20.1842
UUGAGCGAAAAUUUGACCCAGCUAGAGA	chr1:171510807-171511066(+)$1	259	29	57	19.7874
AGAGCGGGAAGAGAGAGAGCGCGCCGAA	chr10:120809341-120809582(-)$1	241	83	111	20.8336
UGCGGCCACUCAUAUUACCAACCGCAGA	chr7:151065774-151066019(+)$1	245	168	196	22.4536
AUUUGGAGCCUACUAUAUUACCAGAUAA	chr21:33075977-33076195(-)$1	218	184	212	23.0144
ggaggaaggagaagagAAACUUGGUAAG	chr5:179151580-179151813(+)$1	233	181	209	21.5168
gcugguggaaucacauaaacacaagcgu	chr11:61644123-61644351(-)$1	228	133	161	22.9509
UCGUCAGCUUGGGAUGGCUGCUGCUGAG	chr14:77571921-77572251(+)$1	330	213	241	22.3114
AGGGAGUUUUUUUCUUGCUUUUUCCCUG	chr11:47746085-47746381(-)$1	296	3	31	20.5692
ACAAGUGGCGGAAAAAAAACCACUUUAU	chr15:89804952-89805209(+)$1	257	193	221	21.6441
CGAAAGAGGGAAGAAAGAAAUCGAUCCG	chr2:95770274-95770507(-)$1	233	57	85	21.8482
UAAGUAAAAAUCUAAUCUGUggcugggu	chr6:47576891-47577145(+)$1	254	219	247	23.3731
GGCAGACAAGAGGAAGAAGGUCUGCAGC	chr6:7247231-7247505(+)$1	274	134	162	23.3847

#DB
((..((((...........))))....)	chr7:91623926-91624189(+)$1	1	60	88	21.8353
((((((.............))))))(((	chr5:37048659-37048873(+)$1	1	122	150	22.8091
(((................)))).))))	chr12:80226028-80226287(-)$1	1	161	189	21.4984
(.((((..............))))))))	chrX:70680488-70680744(+)$1	1	60	88	22.3072
...(((..............))).....	chr5:98205360-98205598(-)$1	1	60	88	20.8991
.((((((............))))))(((	chr3:180322167-180322446(+)$1	1	43	71	22.5088
(.(((................))).)))	chr12:123005839-123006063(-)$1	1	79	107	23.3731
.((((((.............)))))).)	chr9:131020651-131020894(-)$1	1	128	156	22.8501
((((.((............)))))))))	chr11:71184229-71184515(+)$1	1	157	185	21.5253
(((.(((............)))..))).	chr1:104085817-104086073(+)$1	1	126	154	24.1129
((.((((.............))))))))	chr20:34317301-34317536(-)$1	1	71	99	23.0960
(((((((............))).)))))	chr1:193099221-193099474(+)$1	1	203	231	24.5905
(((((((............))))))..)	chr3:9486815-9487046(+)$1	1	13	41	23.6396
((.((((...........)))).))).)	chr3:47677411-47677635(-)$1	1	169	197	21.6577
((((((...............)))))).	chr5:65342168-65342433(+)$1	1	228	256	19.8834
.(((((...............))))).)	chr8:41615517-41615744(-)$1	1	30	58	19.6256
(((((((............)))))))((	chr9:134334449-134334670(+)$1	1	95	123	23.9594
(((((((............))))))).)	chr17:2185848-2186150(-)$1	1	54	82	24.2087
((..((((...........)))))))))	chrX:129149931-129150219(+)$1	1	133	161	22.2979
((.(((..............))))))))	chrX:30849428-30849753(-)$1	1	273	301	23.0830
(.((((((...........)))))).))	chr19:49656594-49656866(-)$1	1	94	122	21.5393
(((((((............))))..)))	chr1:28128087-28128332(+)$1	1	146	174	23.5525
.((((((............))))))..)	chr2:109421305-109421550(+)$1	1	207	235	23.4729
)).((((...........))))(((((.	chr3:170811576-170811820(-)$1	1	70	98	19.7561
(.(((................)))))))	chr1:31764660-31764951(-)$1	1	217	245	23.9901
.(((((..............))))))))	chr2:27898353-27898615(+)$1	1	164	192	21.7803
(((.(((............))).)))))	chr1:22032154-22032386(-)$1	1	31	59	23.9142
((((((...............)))))).	chr5:65342233-65342466(+)$1	1	163	191	19.8834
.(((((.............)))))(.((	chr5:147804984-147805277(+)$1	1	119	147	21.2177
(..((((.............))))))))	chr19:10794492-10794698(+)$1	1	11	39	22.6117
.(((((..............)))))..)	chr2:48046029-48046296(-)$1	1	10	38	22.7769
)((((((.............))))))..	chr14:21831316-21831584(-)$1	1	173	201	21.0889
((((((...............)))))))	chr2:9666139-9666423(-)$1	1	23	51	20.5692
(.(.(((...........))).).)).)	chr16:1779408-1779679(+)$1	1	181	209	21.8115
((.((((.............))))..))	chr17:36871809-36872087(+)$1	1	68	96	22.7173
(.(((................)))))))	chr4:56283880-56284147(+)$1	1	193	221	24.1399
((((................))))..))	chr1:184859174-184859457(-)$1	1	19	47	22.3267
.(((((((...........)))))))..	chr19:5711841-5712099(-)$1	1	148	176	19.4866
(((((.(............).))))))(	chr8:30948349-30948558(+)$1	1	137	165	24.0378
(((((((............))))))).)	chrX:151127407-151127655(-)$1	1	208	236	22.3641
..(((................)))..))	chr12:104340321-104340545(+)$1	1	62	90	23.5025
(..(((..............)))...))	chr14:104141937-104142190(+)$1	1	175	203	24.2542
(((.((............)).)))).))	chr3:160254481-160254704(-)$1	1	37	65	21.2630
.((((..............)))).((((	chr2:71650210-71650459(+)$1	1	68	96	20.1842
((((((..............))).(((.	chr1:171510807-171511066(+)$1	1	29	57	19.7874
)).(((.............)))(((...	chr10:120809341-120809582(-)$1	1	83	111	20.8336
(((((................)))))))	chr7:151065774-151066019(+)$1	1	168	196	22.4536
((((((..............))))))).	chr21:33075977-33076195(-)$1	1	184	212	23.0144
(((..(((...........)))......	chr5:179151580-179151813(+)$1	1	181	209	21.5168
(((.(((............))).)))..	chr11:61644123-61644351(-)$1	1	133	161	22.9509
(((.((((...........)))).))))	chr14:77571921-77572251(+)$1	1	213	241	22.3114
((((((...............)))))))	chr11:47746085-47746381(-)$1	1	3	31	20.5692
(.((((((...........)))))))))	chr15:89804952-89805209(+)$1	1	193	221	21.6441
((...((.............))....))	chr2:95770274-95770507(-)$1	1	57	85	21.8482
(.(((................))).)))	chr6:47576891-47577145(+)$1	1	219	247	23.3731
.((((((............)))))).))	chr6:7247231-7247505(+)$1	1	134	162	23.3847

#PSSM
g : 0.17	c : 0.16	d : 0.12	f : 0.10	: : 0.07	h : 0.05	b : 0.05	! : 0.05	+ : 0.03	[ : 0.03	i : 0.03	e : 0.03	= : 0.01	E : 0.01	" : 0.01	
f : 0.17	g : 0.17	[ : 0.14	c : 0.12	e : 0.10	d : 0.08	! : 0.05	b : 0.03	+ : 0.01	h : 0.01	i : 0.01	= : 0.01	E : 0.01	
f : 0.21	c : 0.14	g : 0.14	e : 0.10	d : 0.08	! : 0.07	[ : 0.07	: : 0.03	+ : 0.01	h : 0.01	i : 0.01	= : 0.01	a : 0.01	E : 0.01	" : 0.01	
f : 0.21	c : 0.17	d : 0.16	g : 0.12	[ : 0.10	e : 0.08	! : 0.05	y : 0.01	h : 0.01	i : 0.01	" : 0.01	
c : 0.26	f : 0.21	d : 0.19	g : 0.12	e : 0.08	y : 0.03	[ : 0.01	b : 0.01	! : 0.01	" : 0.01	
f : 0.19	c : 0.19	d : 0.17	y : 0.14	g : 0.12	e : 0.07	b : 0.05	[ : 0.01	w : 0.01	
d : 0.16	w : 0.16	y : 0.14	f : 0.14	c : 0.10	x : 0.08	g : 0.07	v : 0.05	b : 0.03	a : 0.01	u : 0.01	
u : 0.26	v : 0.16	w : 0.16	y : 0.14	x : 0.08	d : 0.05	t : 0.05	f : 0.03	g : 0.01	c : 0.01	
u : 0.26	t : 0.17	v : 0.16	w : 0.16	y : 0.14	x : 0.08	
u : 0.26	t : 0.17	v : 0.16	w : 0.16	y : 0.14	x : 0.08	
u : 0.26	t : 0.17	v : 0.16	w : 0.16	y : 0.14	x : 0.08	
u : 0.26	t : 0.17	v : 0.16	w : 0.16	y : 0.14	x : 0.08	
u : 0.26	t : 0.17	v : 0.16	w : 0.16	y : 0.14	x : 0.08	
u : 0.26	t : 0.17	v : 0.16	w : 0.16	y : 0.14	x : 0.08	
u : 0.26	t : 0.17	v : 0.16	w : 0.16	y : 0.14	x : 0.08	
u : 0.26	t : 0.17	v : 0.16	w : 0.16	y : 0.14	x : 0.08	
u : 0.26	t : 0.17	v : 0.16	w : 0.16	y : 0.14	x : 0.08	
u : 0.26	t : 0.17	v : 0.16	w : 0.16	y : 0.14	x : 0.08	
u : 0.24	v : 0.16	w : 0.16	y : 0.14	t : 0.12	x : 0.08	d : 0.03	c : 0.01	b : 0.01	
d : 0.14	w : 0.14	f : 0.12	y : 0.12	c : 0.12	v : 0.10	x : 0.08	g : 0.07	b : 0.03	e : 0.01	a : 0.01	
d : 0.23	c : 0.19	f : 0.16	y : 0.10	x : 0.08	g : 0.08	e : 0.05	b : 0.03	] : 0.03	
c : 0.26	d : 0.24	f : 0.21	g : 0.12	e : 0.08	h : 0.01	] : 0.01	b : 0.01	
d : 0.21	f : 0.21	c : 0.16	g : 0.12	e : 0.10	] : 0.07	h : 0.01	2 : 0.01	a : 0.01	b : 0.01	> : 0.01	4 : 0.01	
f : 0.21	g : 0.14	c : 0.12	e : 0.12	d : 0.10	] : 0.05	4 : 0.03	> : 0.03	2 : 0.03	b : 0.03	: : 0.03	h : 0.01	i : 0.01	3 : 0.01	
f : 0.24	g : 0.19	e : 0.12	c : 0.07	2 : 0.07	4 : 0.03	d : 0.03	> : 0.03	] : 0.03	i : 0.03	b : 0.03	a : 0.03	h : 0.01	3 : 0.01	
g : 0.21	f : 0.14	2 : 0.10	c : 0.08	e : 0.08	h : 0.07	] : 0.05	4 : 0.03	d : 0.03	> : 0.03	i : 0.03	= : 0.01	[ : 0.01	b : 0.01	3 : 0.01	" : 0.01	
f : 0.16	g : 0.14	c : 0.12	] : 0.08	h : 0.07	e : 0.07	: : 0.07	d : 0.05	2 : 0.05	> : 0.03	i : 0.03	b : 0.03	4 : 0.01	= : 0.01	" : 0.01	
c : 0.14	g : 0.14	f : 0.10	e : 0.08	h : 0.07	b : 0.07	: : 0.07	d : 0.05	] : 0.05	> : 0.03	i : 0.03	a : 0.03	= : 0.01	! : 0.01	E : 0.01	o : 0.01	" : 0.01	

#score	1245.6922854248662
#seq	56
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_UTR_m2_run2.txt

#BEAR
gggg[bbrrrrrrrrrbb]gg	chr1:1327778-1328069(-)$1	291	155	176	8.7038
e####bbqqqqqqqqbb4444	chr19:54972759-54972990(+)$1	231	101	122	15.4920
c[eeeeeqqqqqqqqeeeeec	chr19:49605887-49606142(+)$1	255	224	245	12.1409
gggggggqqqqqqqqgggggg	chr18:43669718-43670001(-)$1	283	76	97	13.8815
dddd[bbqqqqqqqqbbdddd	chr8:110346553-110346808(+)$1	255	0	21	12.9319
=####bbqqqqqqqqbb7777	chr6:31802965-31803193(+)$1	228	193	214	13.8931
ee!!cccqqqqqqqqccc444	chr1:203764779-203765030(+)$1	251	118	139	15.4801
hhhhcccqqqqqqqqccc666	chr15:69071858-69072105(-)$1	247	77	98	13.9554
[bb[cccqqqqqqqqccc]bb	chr8:110346528-110346753(+)$1	225	95	116	14.6540
[bb[cccqqqqqqqqccc]bb	chr8:110346478-110346728(+)$1	250	145	166	14.6540
bb!!cccqqqqqqqqccc]bb	chr6:26285603-26285848(-)$1	245	124	145	14.7139
e####bbqqqqqqqqbb4444	chr19:54972731-54972959(+)$1	228	129	150	15.4920
HHH:cccqqqqqqqqcccggg	chr7:5569352-5569622(-)$1	270	104	125	11.5346
iiiiiiiiiooooooiiiiii	chr6:7139420-7139688(+)$1	268	198	219	5.8777
iiiiiiiqqqqqqqqiiiiii	chr7:26230680-26230930(-)$1	250	3	24	14.6036
=======qqqqqqqq======	chr17:56082236-56082587(-)$1	351	301	322	14.8433
:ccc[bbqqqqqqqqbb]ccc	chr17:25635435-25635708(+)$1	273	0	21	13.1541
"""ddddqqqqqqqqdddd]c	chr19:49606309-49606566(+)$1	257	182	203	13.0053
hhhhhhhqqqqqqqqhhhhhh	chr16:10479850-10480144(+)$1	294	72	93	12.2467
hhhhcccqqqqqqqqccc666	chr15:69071905-69072177(-)$1	272	149	170	13.9554

#otherMatches

#Seq PSSM
UGUACCUGUAUGAUAAAGAUG	chr1:1327778-1328069(-)$1	291	155	176	8.7038
AAAACGGUUCCCCUCCCUCCC	chr19:54972759-54972990(+)$1	231	101	122	15.4920
ACGAACACAAUCACAUGUUUU	chr19:49605887-49606142(+)$1	255	224	245	12.1409
UUGUCGUGUUUGGAAAUGAUA	chr18:43669718-43670001(-)$1	283	76	97	13.8815
GAAAUGCGUGUUCUAGCUUUC	chr8:110346553-110346808(+)$1	255	0	21	12.9319
UCUUUUGUUCUGUUUCAUUUC	chr6:31802965-31803193(+)$1	228	193	214	13.8931
GGUUCGGUAAAGUUUCUGUUC	chr1:203764779-203765030(+)$1	251	118	139	15.4801
GUUUGGUUACUCAAUGCCCAG	chr15:69071858-69072105(-)$1	247	77	98	13.9554
AGAGUGUGGUAGGUAACGGUC	chr8:110346528-110346753(+)$1	225	95	116	14.6540
AGAGUGUGGUAGGUAACGGUC	chr8:110346478-110346728(+)$1	250	145	166	14.6540
UCUGGCCGUGGUAAAGGUGGA	chr6:26285603-26285848(-)$1	245	124	145	14.7139
AAAACGGUUCCCCUCCCUCCC	chr19:54972731-54972959(+)$1	228	129	150	15.4920
GGCGCCCGGUUGGGAGGGGGU	chr7:5569352-5569622(-)$1	270	104	125	11.5346
AAAUAUCAGUAGGUUCUGAUG	chr6:7139420-7139688(+)$1	268	198	219	5.8777
GAGUUUAACAAUUUAUAAACU	chr7:26230680-26230930(-)$1	250	3	24	14.6036
AUGGUAUGACUCCAAGUGCUA	chr17:56082236-56082587(-)$1	351	301	322	14.8433
AAAUGACUUAUGAUCGUGGUU	chr17:25635435-25635708(+)$1	273	0	21	13.1541
CCAGGGCUUUCCAGCGCCCAG	chr19:49606309-49606566(+)$1	257	182	203	13.0053
CGGCUGCGGUUCGAAGUGGCU	chr16:10479850-10480144(+)$1	294	72	93	12.2467
GUUUGGUUACUCAAUGCCCAG	chr15:69071905-69072177(-)$1	272	149	170	13.9554

#DB
((((.((.........)).))	chr1:1327778-1328069(-)$1	1	155	176	8.7038
(....((........))....	chr19:54972759-54972990(+)$1	1	101	122	15.4920
(.(((((........))))))	chr19:49605887-49606142(+)$1	1	224	245	12.1409
(((((((........))))))	chr18:43669718-43670001(-)$1	1	76	97	13.8815
((((.((........))))))	chr8:110346553-110346808(+)$1	1	0	21	12.9319
(....((........))....	chr6:31802965-31803193(+)$1	1	193	214	13.8931
((..(((........)))...	chr1:203764779-203765030(+)$1	1	118	139	15.4801
(((((((........)))...	chr15:69071858-69072105(-)$1	1	77	98	13.9554
.((.(((........))).))	chr8:110346528-110346753(+)$1	1	95	116	14.6540
.((.(((........))).))	chr8:110346478-110346728(+)$1	1	145	166	14.6540
((..(((........))).))	chr6:26285603-26285848(-)$1	1	124	145	14.7139
(....((........))....	chr19:54972731-54972959(+)$1	1	129	150	15.4920
(((.(((........)))(((	chr7:5569352-5569622(-)$1	1	104	125	11.5346
(((((((((......))))))	chr6:7139420-7139688(+)$1	1	198	219	5.8777
(((((((........))))))	chr7:26230680-26230930(-)$1	1	3	24	14.6036
(((((((........))))))	chr17:56082236-56082587(-)$1	1	301	322	14.8433
.(((.((........)).)))	chr17:25635435-25635708(+)$1	1	0	21	13.1541
...((((........)))).)	chr19:49606309-49606566(+)$1	1	182	203	13.0053
(((((((........))))))	chr16:10479850-10480144(+)$1	1	72	93	12.2467
(((((((........)))...	chr15:69071905-69072177(-)$1	1	149	170	13.9554

#PSSM
e : 0.15	h : 0.15	g : 0.10	= : 0.10	[ : 0.10	i : 0.10	c : 0.05	d : 0.05	b : 0.05	H : 0.05	: : 0.05	" : 0.05	
# : 0.15	h : 0.15	b : 0.15	g : 0.10	i : 0.10	[ : 0.05	d : 0.05	e : 0.05	H : 0.05	= : 0.05	c : 0.05	" : 0.05	
# : 0.15	h : 0.15	g : 0.10	! : 0.10	b : 0.10	i : 0.10	e : 0.05	d : 0.05	H : 0.05	= : 0.05	c : 0.05	" : 0.05	
# : 0.15	h : 0.15	g : 0.10	d : 0.10	! : 0.10	[ : 0.10	i : 0.10	e : 0.05	: : 0.05	= : 0.05	c : 0.05	
c : 0.35	[ : 0.15	# : 0.15	i : 0.10	e : 0.05	g : 0.05	= : 0.05	d : 0.05	h : 0.05	
c : 0.35	b : 0.30	i : 0.10	e : 0.05	g : 0.05	= : 0.05	d : 0.05	h : 0.05	
c : 0.35	b : 0.30	i : 0.10	e : 0.05	g : 0.05	= : 0.05	d : 0.05	h : 0.05	
q : 0.90	r : 0.05	i : 0.05	
q : 0.90	r : 0.05	i : 0.05	
q : 0.90	r : 0.05	o : 0.05	
q : 0.90	r : 0.05	o : 0.05	
q : 0.90	r : 0.05	o : 0.05	
q : 0.90	r : 0.05	o : 0.05	
q : 0.90	r : 0.05	o : 0.05	
q : 0.90	r : 0.05	o : 0.05	
c : 0.35	b : 0.25	i : 0.10	r : 0.05	e : 0.05	g : 0.05	= : 0.05	d : 0.05	h : 0.05	
c : 0.35	b : 0.30	i : 0.10	e : 0.05	g : 0.05	= : 0.05	d : 0.05	h : 0.05	
c : 0.35	4 : 0.10	d : 0.10	i : 0.10	b : 0.05	e : 0.05	g : 0.05	7 : 0.05	= : 0.05	] : 0.05	h : 0.05	
] : 0.20	4 : 0.15	g : 0.10	d : 0.10	6 : 0.10	i : 0.10	e : 0.05	7 : 0.05	= : 0.05	c : 0.05	h : 0.05	
g : 0.15	4 : 0.15	b : 0.15	6 : 0.10	i : 0.10	e : 0.05	d : 0.05	7 : 0.05	= : 0.05	c : 0.05	] : 0.05	h : 0.05	
g : 0.15	4 : 0.15	c : 0.15	b : 0.15	6 : 0.10	i : 0.10	d : 0.05	7 : 0.05	= : 0.05	h : 0.05	

#score	265.2142153666
#seq	20
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_UTR_m2_run2.txt

#BEAR
$$ccc[cccnnnnnccc]ccc	chr6:32939473-32939694(+)$1	221	36	57	11.9052
ggggg[cccnnnnncccgggg	chr5:112203194-112203503(+)$1	309	45	66	12.6270
iiiiiiiiinnnnniiiiiii	chr3:9477385-9477601(+)$1	216	77	98	11.9027
G:gggggggnnnnnggggggg	chr22:22123368-22123623(-)$1	255	73	94	9.9924
e[ccc[cccnnnnnccc]ccc	chr17:19861339-19861618(-)$1	279	58	79	12.4480
:eeeee[bbnnnnnbbeeeee	chr10:18940203-18940455(-)$1	252	63	84	10.3890
fffff!!bbnnnnnbb22fff	chr19:54972069-54972299(+)$1	230	32	53	11.8760
eeee[cccooooooccc333e	chr11:214289-214551(+)$1	262	63	84	8.8742
ggggg[cccnnnnnccc]ggg	chr12:27950566-27950911(+)$1	345	170	191	12.8178
=========nnnnn=======	chr7:120614808-120615116(+)$1	308	84	105	12.4739
fff!!ddddnnnnndddd22f	chr14:69256425-69256658(-)$1	233	145	166	11.2397
eeeee[cccnnnnnccceeee	chr7:148506098-148506310(-)$1	212	148	169	11.9046
ffffff[bbnnnnnbb]ffff	chr17:56084358-56084600(-)$1	242	41	62	11.6373
[eeeee[bbnnnnnbb]eeee	chr19:56173872-56174084(+)$1	212	185	206	11.6533
cccc[ddddnnnnndddd22c	chr1:11850334-11850603(-)$1	269	125	146	11.2845
iiiiiiiiinnnnniiiiiii	chr5:177658545-177658809(-)$1	264	212	233	11.9027
e!!ccc[bbnnnnnbb]ccc2	chr11:64844988-64845220(-)$1	232	154	175	11.8431
dddd!!cccnnnnnccc22dd	chr8:64100120-64100363(+)$1	243	45	66	12.3375
eee!!cccooooooccc22ee	chr11:85374665-85374928(-)$1	263	129	150	8.6198
ffffff[bbnnnnnbb]ffff	chr17:56084452-56084668(-)$1	216	109	130	11.6373
cc[a[ddddnnnnndddd]a]	chr22:20748380-20748617(+)$1	237	91	112	11.4539
=========nnnnn=======	chr22:26860325-26860593(-)$1	268	65	86	12.4739
gggggggbbnnnnnbb]gggg	chr1:16265816-16266032(+)$1	216	108	129	12.2652
cc"""a[bbnnnnnbb]a333	chr19:54682453-54682712(-)$1	259	181	202	12.7968
ddd!!ddddnnnnndddd]dd	chr10:121356080-121356311(-)$1	231	150	171	11.0125
ffffffcccnnnnnccc4444	chr17:80401361-80401638(-)$1	277	43	64	12.2243
eeee!!cccnnnnnccc22ee	chr9:116136529-116136825(-)$1	296	272	293	12.7953
ffff[ddddnnnnnddddfff	chr6:32940424-32940680(+)$1	256	96	117	10.9164
dddd[ddddnnnnndddd]dd	chr11:62572734-62572983(-)$1	249	94	115	10.7624
!a[ffffffnnnnnffffff]	chr7:5781142-5781395(-)$1	253	103	124	10.6241
c[a!!ddddnnnnndddd22a	chr19:41858903-41859148(-)$1	245	53	74	11.3989
ccc!!cccannnnna]ccc]c	chr8:30891328-30891563(+)$1	235	88	109	12.1666
a[ddddcccnnnnnccc]ddd	chr2:20101251-20101495(-)$1	244	77	98	11.4558
bb[ddddbbnnnnnbb22ddd	chr16:69776023-69776299(-)$1	276	143	164	10.6630
ccc"""cccnnnnnccc22cc	chr1:32842131-32842383(-)$1	252	226	247	12.8844
[eeeee[bbnnnnnbbeeeee	chr16:85044940-85045187(-)$1	247	118	139	11.4223
eeeee[cccnnnnnccceeee	chr16:1749090-1749330(+)$1	240	146	167	11.9046
$$a[ccc[annnnna]ccc]a	chr2:215645978-215646319(-)$1	341	178	199	10.9678
ddd####bbnnnnnbb333dd	chr10:52103925-52104163(-)$1	238	28	49	12.2454
ffffffcccnnnnnccc333f	chr15:93567887-93568100(+)$1	213	125	146	12.6735
e####cccooooooccc4444	chr18:9570215-9570460(-)$1	245	16	37	8.2658
cc[ffffffnnnnnffffffc	chr16:66864687-66864923(-)$1	236	123	144	10.6897
dd[a[a[bbnnnnnbb22a]a	chr1:110527416-110527629(+)$1	213	121	142	12.2299
iiiiiiiiinnnnniiiiiii	chr3:25819963-25820254(-)$1	291	20	41	11.9027
ccc!!cccooooooccc22cc	chr20:57485635-57485875(+)$1	240	198	219	8.7698
c!!ffffffnnnnnffffff2	chr16:2998832-2999144(+)$1	312	43	64	10.4970
ffffff[bbnnnnnbb]ffff	chr20:31395595-31395881(+)$1	286	236	257	11.6373
ggggggcccnnnnnccc22gg	chr13:111290787-111291046(+)$1	259	30	51	12.8588
dddd[ddddnnnnndddd]dd	chr10:81073101-81073342(+)$1	241	93	114	10.7624
iiiii!!bbnnnnnbb22iii	chr19:16242989-16243251(+)$1	262	94	115	12.4822

#otherMatches

#Seq PSSM
AUGGCACGACCUGCUCGAGCU	chr6:32939473-32939694(+)$1	221	36	57	11.9052
UAUCAGCAUCAAGUAUGUGGU	chr5:112203194-112203503(+)$1	309	45	66	12.6270
CUGUGUUGUAUACAGCAACAC	chr3:9477385-9477601(+)$1	216	77	98	11.9027
GCUCAAAGAACUAAUUUUUGA	chr22:22123368-22123623(-)$1	255	73	94	9.9924
UGUUUAUGACUCAUUCAGAAG	chr17:19861339-19861618(-)$1	279	58	79	12.4480
GGCUCAGUGAUUUCCAUGAGC	chr10:18940203-18940455(-)$1	252	63	84	10.3890
CUUCUGAGCACCCAGCGAGGA	chr19:54972069-54972299(+)$1	230	32	53	11.8760
AUGGCAGCUCUUCUGCUCCCC	chr11:214289-214551(+)$1	262	63	84	8.8742
AUGGUGUCUGUGGAAGAGACC	chr12:27950566-27950911(+)$1	345	170	191	12.8178
AAAUAAAGGUGGUCCUUUUGU	chr7:120614808-120615116(+)$1	308	84	105	12.4739
GCCUUCUCCAGCCAGGAGCUG	chr14:69256425-69256658(-)$1	233	145	166	11.2397
GUUGGUAAAGUACAUUUCUAG	chr7:148506098-148506310(-)$1	212	148	169	11.9046
CUGCCGUGCGCUAGGCUUGGU	chr17:56084358-56084600(-)$1	242	41	62	11.6373
UGGAGCUGCCUUGUGcuguuu	chr19:56173872-56174084(+)$1	212	185	206	11.6533
GAGGACCACAGUGGGUGGCAC	chr1:11850334-11850603(-)$1	269	125	146	11.2845
GGGGUCUGCGAUGAGUAGACU	chr5:177658545-177658809(-)$1	264	212	233	11.9027
AGAAUCAGGAGUCACCAGAUG	chr11:64844988-64845220(-)$1	232	154	175	11.8431
AGGGACACUCAAGAGGUACCC	chr8:64100120-64100363(+)$1	243	45	66	12.3375
GUCAAACUUACCUUAGUGGGA	chr11:85374665-85374928(-)$1	263	129	150	8.6198
CUGCCGUGCGCUAGGCUUGGU	chr17:56084452-56084668(-)$1	216	109	130	11.6373
CGCAGUCCUUUUGUGGGAGUC	chr22:20748380-20748617(+)$1	237	91	112	11.4539
GGGGAAGGAACUAGUCUUUCU	chr22:26860325-26860593(-)$1	268	65	86	12.4739
CACUGAGUGGUUAUCACCUCA	chr1:16265816-16266032(+)$1	216	108	129	12.2652
CUGGCGCAGUAUAUCUACAAG	chr19:54682453-54682712(-)$1	259	181	202	12.7968
ugcuccuccuGGUUGGAGCGC	chr10:121356080-121356311(-)$1	231	150	171	11.0125
UCAUGCUGCUGCUUGCACACU	chr17:80401361-80401638(-)$1	277	43	64	12.2243
GCCUAUGCCACCAAGGCCCGG	chr9:116136529-116136825(-)$1	296	272	293	12.7953
UUUCGUGCCGGCCAGGCAGGG	chr6:32940424-32940680(+)$1	256	96	117	10.9164
GUUAGGUUGUUUGCCGGCGUA	chr11:62572734-62572983(-)$1	249	94	115	10.7624
UUGAUUCUGGGGCACAGGAUG	chr7:5781142-5781395(-)$1	253	103	124	10.6241
GCGCCCUUCUCCCUGAGGACC	chr19:41858903-41859148(-)$1	245	53	74	11.3989
UGCAGGCCCUGCUUGUGGUGG	chr8:30891328-30891563(+)$1	235	88	109	12.1666
GUUGGGGUUGUUUGGGCUCCU	chr2:20101251-20101495(-)$1	244	77	98	11.4558
GUCUCCAGGACCACCCGAUGG	chr16:69776023-69776299(-)$1	276	143	164	10.6630
CAGAUCGCCAACCCGGCCACU	chr1:32842131-32842383(-)$1	252	226	247	12.8844
CUUCCGACCUGCCCGGCGGGA	chr16:85044940-85045187(-)$1	247	118	139	11.4223
UCCAGGUUUGAGAGGAACUGG	chr16:1749090-1749330(+)$1	240	146	167	11.9046
AAAGUCAGAUAUGUUGUGAGU	chr2:215645978-215646319(-)$1	341	178	199	10.9678
GCAUCUUGAUAUUUUCUCUUG	chr10:52103925-52104163(-)$1	238	28	49	12.2454
UCUAGACCAGUAAGUGGAGUU	chr15:93567887-93568100(+)$1	213	125	146	12.6735
UAACUACAAAUCUAUGUUACG	chr18:9570215-9570460(-)$1	245	16	37	8.2658
GGCGCAGCUGGGAAAGCUGCU	chr16:66864687-66864923(-)$1	236	123	144	10.6897
CGACGCAGCUCGACGCAGggg	chr1:110527416-110527629(+)$1	213	121	142	12.2299
GAAGAACUAUGACCUGGUUUU	chr3:25819963-25820254(-)$1	291	20	41	11.9027
UGCCGUGACAUCAUUCAGCGC	chr20:57485635-57485875(+)$1	240	198	219	8.7698
CUCCCAGGAGGAAUUCUUGGA	chr16:2998832-2999144(+)$1	312	43	64	10.4970
GUUCCCUCUUGCUCAGUGGGG	chr20:31395595-31395881(+)$1	286	236	257	11.6373
CACCUCCGACAUGAUCGCCGA	chr13:111290787-111291046(+)$1	259	30	51	12.8588
GCCAUUCCUGCUUGGGGACUG	chr10:81073101-81073342(+)$1	241	93	114	10.7624
GAGCAGCUUUUUCCGAUGUGU	chr19:16242989-16243251(+)$1	262	94	115	12.4822

#DB
..(((.(((.....))).)))	chr6:32939473-32939694(+)$1	1	36	57	11.9052
(((((.(((.....)))))))	chr5:112203194-112203503(+)$1	1	45	66	12.6270
(((((((((.....)))))))	chr3:9477385-9477601(+)$1	1	77	98	11.9027
(.(((((((.....)))))))	chr22:22123368-22123623(-)$1	1	73	94	9.9924
(.(((.(((.....))).)))	chr17:19861339-19861618(-)$1	1	58	79	12.4480
.(((((.((.....)))))))	chr10:18940203-18940455(-)$1	1	63	84	10.3890
(((((..((.....))..)))	chr19:54972069-54972299(+)$1	1	32	53	11.8760
((((.(((......)))...)	chr11:214289-214551(+)$1	1	63	84	8.8742
(((((.(((.....))).)))	chr12:27950566-27950911(+)$1	1	170	191	12.8178
(((((((((.....)))))))	chr7:120614808-120615116(+)$1	1	84	105	12.4739
(((..((((.....))))..)	chr14:69256425-69256658(-)$1	1	145	166	11.2397
(((((.(((.....)))))))	chr7:148506098-148506310(-)$1	1	148	169	11.9046
((((((.((.....)).))))	chr17:56084358-56084600(-)$1	1	41	62	11.6373
.(((((.((.....)).))))	chr19:56173872-56174084(+)$1	1	185	206	11.6533
((((.((((.....))))..)	chr1:11850334-11850603(-)$1	1	125	146	11.2845
(((((((((.....)))))))	chr5:177658545-177658809(-)$1	1	212	233	11.9027
(..(((.((.....)).))).	chr11:64844988-64845220(-)$1	1	154	175	11.8431
((((..(((.....)))..))	chr8:64100120-64100363(+)$1	1	45	66	12.3375
(((..(((......)))..))	chr11:85374665-85374928(-)$1	1	129	150	8.6198
((((((.((.....)).))))	chr17:56084452-56084668(-)$1	1	109	130	11.6373
((.(.((((.....)))).).	chr22:20748380-20748617(+)$1	1	91	112	11.4539
(((((((((.....)))))))	chr22:26860325-26860593(-)$1	1	65	86	12.4739
(((((((((.....)).))))	chr1:16265816-16266032(+)$1	1	108	129	12.2652
((...(.((.....)).)...	chr19:54682453-54682712(-)$1	1	181	202	12.7968
(((..((((.....)))).))	chr10:121356080-121356311(-)$1	1	150	171	11.0125
(((((((((.....)))....	chr17:80401361-80401638(-)$1	1	43	64	12.2243
((((..(((.....)))..))	chr9:116136529-116136825(-)$1	1	272	293	12.7953
((((.((((.....)))))))	chr6:32940424-32940680(+)$1	1	96	117	10.9164
((((.((((.....)))).))	chr11:62572734-62572983(-)$1	1	94	115	10.7624
.(.((((((.....)))))).	chr7:5781142-5781395(-)$1	1	103	124	10.6241
(.(..((((.....))))..)	chr19:41858903-41859148(-)$1	1	53	74	11.3989
(((..((((.....).))).)	chr8:30891328-30891563(+)$1	1	88	109	12.1666
(.(((((((.....))).)))	chr2:20101251-20101495(-)$1	1	77	98	11.4558
((.((((((.....))..)))	chr16:69776023-69776299(-)$1	1	143	164	10.6630
(((...(((.....)))..))	chr1:32842131-32842383(-)$1	1	226	247	12.8844
.(((((.((.....)))))))	chr16:85044940-85045187(-)$1	1	118	139	11.4223
(((((.(((.....)))))))	chr16:1749090-1749330(+)$1	1	146	167	11.9046
..(.(((.(.....).))).)	chr2:215645978-215646319(-)$1	1	178	199	10.9678
(((....((.....))...))	chr10:52103925-52104163(-)$1	1	28	49	12.2454
(((((((((.....)))...)	chr15:93567887-93568100(+)$1	1	125	146	12.6735
(....(((......)))....	chr18:9570215-9570460(-)$1	1	16	37	8.2658
((.((((((.....)))))))	chr16:66864687-66864923(-)$1	1	123	144	10.6897
((.(.(.((.....))..).)	chr1:110527416-110527629(+)$1	1	121	142	12.2299
(((((((((.....)))))))	chr3:25819963-25820254(-)$1	1	20	41	11.9027
(((..(((......)))..))	chr20:57485635-57485875(+)$1	1	198	219	8.7698
(..((((((.....)))))).	chr16:2998832-2999144(+)$1	1	43	64	10.4970
((((((.((.....)).))))	chr20:31395595-31395881(+)$1	1	236	257	11.6373
(((((((((.....)))..))	chr13:111290787-111291046(+)$1	1	30	51	12.8588
((((.((((.....)))).))	chr10:81073101-81073342(+)$1	1	93	114	10.7624
(((((..((.....))..)))	chr19:16242989-16243251(+)$1	1	94	115	12.4822

#PSSM
c : 0.18	e : 0.16	f : 0.16	d : 0.12	g : 0.08	i : 0.08	$ : 0.04	= : 0.04	[ : 0.04	G : 0.02	: : 0.02	! : 0.02	a : 0.02	b : 0.02	
e : 0.16	f : 0.16	c : 0.14	d : 0.12	g : 0.08	i : 0.08	[ : 0.06	$ : 0.04	= : 0.04	! : 0.04	: : 0.02	a : 0.02	b : 0.02	# : 0.02	
e : 0.16	f : 0.16	c : 0.12	d : 0.12	g : 0.10	[ : 0.10	i : 0.08	= : 0.04	! : 0.04	a : 0.04	" : 0.02	# : 0.02	
f : 0.19	e : 0.14	! : 0.12	g : 0.10	d : 0.10	c : 0.08	i : 0.08	= : 0.04	a : 0.04	" : 0.04	# : 0.04	[ : 0.02	
f : 0.18	! : 0.16	[ : 0.14	g : 0.10	e : 0.10	c : 0.08	i : 0.08	= : 0.04	" : 0.04	d : 0.04	# : 0.04	
d : 0.19	f : 0.16	c : 0.14	[ : 0.12	! : 0.08	i : 0.06	g : 0.06	e : 0.06	= : 0.04	a : 0.04	" : 0.02	# : 0.02	
c : 0.38	[ : 0.18	d : 0.18	i : 0.06	f : 0.06	g : 0.04	! : 0.04	= : 0.04	# : 0.02	
c : 0.36	b : 0.27	d : 0.16	i : 0.06	f : 0.06	= : 0.04	g : 0.02	[ : 0.02	
b : 0.27	c : 0.25	d : 0.16	o : 0.08	i : 0.06	f : 0.06	= : 0.04	a : 0.04	g : 0.02	
n : 0.92	o : 0.08	
n : 0.92	o : 0.08	
n : 0.92	o : 0.08	
n : 0.92	o : 0.08	
n : 0.92	o : 0.08	
c : 0.34	b : 0.27	d : 0.16	i : 0.06	f : 0.06	= : 0.04	a : 0.04	g : 0.02	
c : 0.34	b : 0.27	d : 0.16	i : 0.06	f : 0.06	= : 0.04	] : 0.04	g : 0.02	
c : 0.38	d : 0.16	] : 0.14	2 : 0.08	i : 0.06	f : 0.06	e : 0.04	= : 0.04	g : 0.02	3 : 0.02	
2 : 0.19	d : 0.16	f : 0.12	e : 0.10	] : 0.08	g : 0.06	i : 0.06	3 : 0.06	c : 0.06	= : 0.04	4 : 0.04	a : 0.02	
2 : 0.18	f : 0.16	c : 0.10	e : 0.10	g : 0.08	i : 0.08	3 : 0.08	] : 0.08	= : 0.04	4 : 0.04	d : 0.04	a : 0.02	
f : 0.16	e : 0.14	d : 0.14	c : 0.10	g : 0.10	i : 0.08	3 : 0.06	2 : 0.06	] : 0.06	= : 0.04	4 : 0.04	a : 0.02	
e : 0.16	c : 0.14	f : 0.14	d : 0.14	g : 0.10	i : 0.08	a : 0.06	= : 0.04	2 : 0.04	] : 0.04	4 : 0.04	3 : 0.02	

#score	574.5710384392142
#seq	50
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_UTR_m3_run2.txt

#BEAR
===========[bb[bbnnnnnbb]bb]===========]	chr11:2152019-2152229(-)$1	210	125	165	13.1704
ggggggg[eeeee[ddddllldddd22eeeee]ggggggg	chr11:2152314-2152518(-)$1	204	9	49	15.3139
#dddd!!ggggggg[cccnnnnnccc22gggggggdddd2	chr17:30707804-30708024(+)$1	220	102	142	12.9387
ccc!!ffffff[bb[ddddlllddddbb]ffffff22ccc	chr11:2152083-2152289(-)$1	206	10	50	16.8350
bb[a[iiiiiiiiiddddmmmmdddd333iiiiiiiiiab	chrX:153672882-153673112(+)$1	230	134	174	15.8474
============[eeeeemmmmeeeee]============	chr12:125605422-125605725(+)$1	303	106	146	14.6225
!!a[a[ccc[ccceeeeemmmmeeeee]ccc]ccc]a]a2	chr12:53906017-53906236(-)$1	219	57	97	12.5773
ccc!!ffffff[bb[ddddlllddddbb]ffffff22ccc	chr11:2152080-2152283(-)$1	203	4	44	16.8350
""ddddggggggg!!ccclllccc333ggggggg22dddd	chr8:42911686-42911964(+)$1	278	219	259	14.9055
iiiiiiicccffffffbbmmmmbb]ffffff]ccc22iii	chr16:2514496-2514729(+)$1	233	63	103	12.9946
cccggggggg[ffffffmmmmffffff]ggggggg]cccd	chr19:56154578-56154844(+)$1	266	106	146	12.2555
ccc!!ffffff[bb[ddddlllddddbb]ffffff22ccc	chr11:2152129-2152337(-)$1	208	58	98	16.8350
ccc!!ffffff[bb[ddddlllddddbb]ffffff22ccc	chr11:2152227-2152443(-)$1	216	164	204	16.8350
ddd"""iiiiiiiiibbnnnnnbb]iiiiiiiii333ddd	chr11:2152428-2152636(-)$1	208	166	206	13.1071
!ccc[ggggggg"""cccmmmmccc333ggggggg]ccc]	chrX:20284728-20284965(-)$1	237	110	150	17.5754
ggggggg[eeeee[ddddllldddd22eeeee]ggggggg	chr11:2152318-2152527(-)$1	209	18	58	15.3139
h####bb[ffffff[a[ammmma]a]ffffffbb333hhh	chr19:54057978-54058301(+)$1	323	159	199	12.9898
eeeeeggggggg!!ddddmmmmdddd]ggggggg>>>>>>	chr15:75953268-75953549(+)$1	281	173	213	14.1859
ccc!!ffffff[bb[ddddlllddddbb]ffffff22ccc	chr11:2152213-2152419(-)$1	206	140	180	16.8350
hhhh[ggggggg!!cccnnnnnccc333ggggggg]hhhh	chr17:80441974-80442238(+)$1	264	97	137	14.5366
ccc!!ffffff[bb[ddddlllddddbb]ffffff22ccc	chr11:2152157-2152378(-)$1	221	99	139	16.8350
cc!!ffffff[bb[ddddlllddddbb]ffffff22ccc:	chr11:2152074-2152280(-)$1	206	2	42	13.9613
!!bb[iiiiiiiiiddddllldddd22iiiiiiiii]bbe	chr2:233415044-233415328(-)$1	284	75	115	15.2169
[dddd"""==========mmmm==========333dddd]	chr16:23476268-23476532(-)$1	264	93	133	14.1119
bb[a=========="""ammmma333==========]a]b	chr6:117923448-117923718(-)$1	270	223	263	14.8236
gggggg!!eeeeebbcccmmmmccc]bb]eeeee333ggg	chr2:242275379-242275599(+)$1	220	169	209	14.4959
ccc!!ffffff[bb[ddddlllddddbb]ffffff22ccc	chr11:2152089-2152296(-)$1	207	17	57	16.8350
adddd[a[dddd!!ddddmmmmdddd]dddd]a]dddd]a	chr11:72852199-72852453(-)$1	254	201	241	12.1670
dddd[ccc==========mmmm==========]ccc]ddd	chr17:48830579-48830819(+)$1	240	109	149	14.7157
eee[ccc!!ffffffcccmmmmccc]ffffff22ccceee	chr5:178986689-178986958(+)$1	269	94	134	12.8045
ggggggg[eeeee[ddddllldddd22eeeee]ggggggg	chr11:2152368-2152572(-)$1	204	63	103	15.3139
ccc!!ffffff[bb[ddddlllddddbb]ffffff22ccc	chr11:2152117-2152320(-)$1	203	41	81	16.8350
ccc!!ffffff[bb[ddddlllddddbb]ffffff22ccc	chr11:2152096-2152300(-)$1	204	21	61	16.8350
ggggggg[eeeee[ddddllldddd22eeeee]ggggggg	chr11:2152372-2152574(-)$1	202	65	105	15.3139
===!!affffff[bbcccmmmmccc]bb]ffffff66666	chr15:63449292-63449589(-)$1	297	162	202	12.9044
dddd[ffffffbb!!ddddllldddd22bb333ffffffd	chr2:180128820-180129083(-)$1	263	90	130	13.7492
gggg[ccc[bb[ffffffmmmmffffff]bb]ccc]gggg	chr16:89630341-89630590(+)$1	249	85	125	12.1141
iiiiiiicccffffffbbmmmmbb]ffffff]ccc22iii	chr16:2514456-2514696(+)$1	240	103	143	12.9946
[a[ccc[ffffff!!cccmmmmccc22ffffff]ccc]a]	chr4:15656785-15657067(-)$1	282	120	160	15.1838
dddd"""iiiiiiiiibbnnnnnbb]iiiiiiiii333dd	chr11:2152268-2152472(-)$1	204	1	41	12.9223
!ccc[ggggggg"""cccmmmmccc333ggggggg]ccc]	chrX:20284781-20285022(-)$1	241	167	207	17.5754
cc[ccc[bb[bb!!ddddmmmmdddd22bb]bb]ccc22c	chr17:77760179-77760426(+)$1	247	30	70	12.3704
d!!ffffff[bb!!ddddmmmmdddd22bb]ffffff22d	chr7:150777269-150777557(-)$1	288	98	138	13.0717
eeee[ffffff[a[ddddmmmmdddd]a]ffffff]eeee	chr19:2270214-2270443(+)$1	229	92	132	15.6416
ggggggg[eeeee[ddddllldddd22eeeee]ggggggg	chr11:2152426-2152628(-)$1	202	119	159	15.3139
ggggggg[eeeee[ddddllldddd22eeeee]ggggggg	chr11:2152415-2152622(-)$1	207	113	153	15.3139
========:dddd[a[ccclllccc]a]ddddggggggg[	chr5:36151710-36151956(-)$1	246	135	175	12.0719
#dddd!!ggggggg[cccnnnnnccc22gggggggdddd2	chr17:30707839-30708069(+)$1	230	67	107	12.9387
dddd[ccceeeee!!ccclllccc22eeeee]ccc]dddd	chr16:20911105-20911366(-)$1	261	107	147	13.3704
ggg"""ccc"""a[ddddmmmmdddd]a22ccc333gggg	chr11:75161435-75161670(-)$1	235	33	73	15.1494
!ccc[ggggggg"""cccmmmmccc333ggggggg]ccc]	chrX:20284765-20284981(-)$1	216	126	166	17.5754
fffff[============mmmm============]fffff	chr14:70236966-70237210(+)$1	244	76	116	13.8501
ggggggg####ccc[cccmmmmccc]ccc]ggggggg:::	chr17:42200636-42200908(-)$1	272	167	207	11.7099
ddddddccceeeee[ddddlllddddeeeee]ccc22ddd	chr10:79551251-79551508(-)$1	257	84	124	13.4669
ee::==========[cccmmmmccc]==========:eee	chr17:30705081-30705338(+)$1	257	93	133	13.1908
:ccc[iiiiiiiiicccnnnnnccc]iiiiiiiii]ccc:	chr2:179315341-179315606(-)$1	265	13	53	13.0725

#otherMatches

#Seq PSSM
CUCCUGGGGACCCCCCAAGAAAUGUGGAGUCCUCGGGGGC	chr11:2152019-2152229(-)$1	210	125	165	13.1704
CUGUCUGUGCCCUGCCUCUCAGAGGAGGGGGCUCAGAUGG	chr11:2152314-2152518(-)$1	204	9	49	15.3139
aggagguugcagugagccgagauggcgccguugcacucca	chr17:30707804-30708024(+)$1	220	102	142	12.9387
CCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGGAAGG	chr11:2152083-2152289(-)$1	206	10	50	16.8350
AGCGUCCUGGCUCUGGCCCCUCGGCCCUCAGAGCCAGGCC	chrX:153672882-153673112(+)$1	230	134	174	15.8474
guguaugugugcauguaccuguguacacgcguacaugugC	chr12:125605422-125605725(+)$1	303	106	146	14.6225
AACUCAACUCGGUCUGGGUCUCCCCAGUGCCCAGUGGUGG	chr12:53906017-53906236(-)$1	219	57	97	12.5773
CCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGGAAGG	chr11:2152080-2152283(-)$1	203	4	44	16.8350
CUCGGCUUUCCGCCUGCUUUAAGCCACGCGGAAACUGCUG	chr8:42911686-42911964(+)$1	278	219	259	14.9055
CACAGCCGCAGGGGCCGCCCUGGCUGGCCCUGUGCCGGGC	chr16:2514496-2514729(+)$1	233	63	103	12.9946
accuugguuuucugcucucuggagcggugaACCGGUGGUU	chr19:56154578-56154844(+)$1	266	106	146	12.2555
CCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGGAAGG	chr11:2152129-2152337(-)$1	208	58	98	16.8350
CCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGGAAGG	chr11:2152227-2152443(-)$1	216	164	204	16.8350
GUGCGGCCUGAGUGUGCGGCCGGCGGCAUUUGGGAUACAC	chr11:2152428-2152636(-)$1	208	166	206	13.1071
gccgccgccgccgcugccgUGGGGCUCgggcggcgacgga	chrX:20284728-20284965(-)$1	237	110	150	17.5754
CUGUCUGUGCCCUGCCUCUCAGAGGAGGGGGCUCAGAUGG	chr11:2152318-2152527(-)$1	209	18	58	15.3139
GUGAGGUGCGCUCUGGGGGAUAUGUGGGGGCGGCGAUCAG	chr19:54057978-54058301(+)$1	323	159	199	12.9898
CUCUGGGCCAGGCUGCCUCUGAAGGCCCCUGGCUGAACCG	chr15:75953268-75953549(+)$1	281	173	213	14.1859
CCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGGAAGG	chr11:2152213-2152419(-)$1	206	140	180	16.8350
GGUUCUGCUGGGGGCGGUGACCUCGAUACCCAGCAAGGCC	chr17:80441974-80442238(+)$1	264	97	137	14.5366
CCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGGAAGG	chr11:2152157-2152378(-)$1	221	99	139	16.8350
CUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGGAAGGA	chr11:2152074-2152280(-)$1	206	2	42	13.9613
UCAGCGGCGGAGCUGGCUGCUGGCCUCAGUUCUGCCUCUG	chr2:233415044-233415328(-)$1	284	75	115	15.2169
CUGAAGGAGCUUCUUUUCCUCUGGGGAGAAGCAAAUUCAU	chr16:23476268-23476532(-)$1	264	93	133	14.1119
GCGGCGAGGGUCUUCAGCAGUCGGGAGAGGCCCUUGACGG	chr6:117923448-117923718(-)$1	270	223	263	14.8236
UACUUAAUAUACUUCAUAAAUUUAUAGAUAGUGUUAAUGA	chr2:242275379-242275599(+)$1	220	169	209	14.4959
CCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGGAAGG	chr11:2152089-2152296(-)$1	207	17	57	16.8350
GCACUGCGAUCCGGGGUUGGAUGACCAGGGUGGGAGUGAC	chr11:72852199-72852453(-)$1	254	201	241	12.1670
AGGGUCCUGUGGCUUCAUGUUUAUGGAGUUGCUAGGUCUC	chr17:48830579-48830819(+)$1	240	109	149	14.7157
CCUCUGGAGCAGGAGGCCCAGUGGCUCUUCUGACCCAAGG	chr5:178986689-178986958(+)$1	269	94	134	12.8045
CUGUCUGUGCCCUGCCUCUCAGAGGAGGGGGCUCAGAUGG	chr11:2152368-2152572(-)$1	204	63	103	15.3139
CCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGGAAGG	chr11:2152117-2152320(-)$1	203	41	81	16.8350
CCUUACUUACUGUGUGUUGGCCCAGCCAGAGUGAGGAAGG	chr11:2152096-2152300(-)$1	204	21	61	16.8350
CUGUCUGUGCCCUGCCUCUCAGAGGAGGGGGCUCAGAUGG	chr11:2152372-2152574(-)$1	202	65	105	15.3139
CGCGGCGCGGCUGGCCCUGCAGGGGCGUGGGCUGCAAUUC	chr15:63449292-63449589(-)$1	297	162	202	12.9044
GCGCCGGAGGUGGGAGCCCUGCGGGCCGCCUUUGCCUCCG	chr2:180128820-180129083(-)$1	263	90	130	13.7492
UGUCCGAGGGCAGCAUGGUUUCUCGUGCAGUGCUCAGACA	chr16:89630341-89630590(+)$1	249	85	125	12.1141
CACAGCCGCAGGGGCCGCCCUGGCUGGCCCUGUGCCGGGC	chr16:2514456-2514696(+)$1	240	103	143	12.9946
ggccgcggcugcugaggcggaggcugaggcaguggcgaug	chr4:15656785-15657067(-)$1	282	120	160	15.1838
GGUGCGGCCUGAGUGUGCGGCCGGCGGCAUUUGGGAUACA	chr11:2152268-2152472(-)$1	204	1	41	12.9223
gccgccgccgccgcugccgUGGGGCUCgggcggcgacgga	chrX:20284781-20285022(-)$1	241	167	207	17.5754
CCUGGUAGAGGGUCCCGGGAAGCUGGAUCUGUCAGCCUCG	chr17:77760179-77760426(+)$1	247	30	70	12.3704
ugugccgccgccgccucCUGUGGGAGAGGGAGguggucgg	chr7:150777269-150777557(-)$1	288	98	138	13.0717
CCGUCGAGCGUGCGCUGCGGGAGCGGGGAGCGCUUUGCGG	chr19:2270214-2270443(+)$1	229	92	132	15.6416
CUGUCUGUGCCCUGCCUCUCAGAGGAGGGGGCUCAGAUGG	chr11:2152426-2152628(-)$1	202	119	159	15.3139
CUGUCUGUGCCCUGCCUCUCAGAGGAGGGGGCUCAGAUGG	chr11:2152415-2152622(-)$1	207	113	153	15.3139
GGACGGUGAGCCUAAGGCGGAACGCGUGAGGCGCUUUUGA	chr5:36151710-36151956(-)$1	246	135	175	12.0719
aggagguugcagugagccgagauggcgccguugcacucca	chr17:30707839-30708069(+)$1	230	67	107	12.9387
GCCCUGGAGGGGGUGCAGACUCUGGUCCUCUGUCCUGGGU	chr16:20911105-20911366(-)$1	261	107	147	13.3704
GGCGGACCUAGAUGCUGGGAGUCCGGGAGAGGGCAGGCCG	chr11:75161435-75161670(-)$1	235	33	73	15.1494
gccgccgccgccgcugccgUGGGGCUCgggcggcgacgga	chrX:20284765-20284981(-)$1	216	126	166	17.5754
AUAGAAUACAAGUGUGGUAAAUGCCAUGUUUGUACUUUAU	chr14:70236966-70237210(+)$1	244	76	116	13.8501
CUCCCGGCCCUGGGAGCCAGCCGGCGCCCCCCGGGAGCAU	chr17:42200636-42200908(-)$1	272	167	207	11.7099
GGUCCAGGUGGUGUUCAGCUGUGCUGAUGCCUGCCAUUGG	chr10:79551251-79551508(-)$1	257	84	124	13.4669
AGUUGUAAUAAAGGUGUAAUACUGCUCCUUUGUUAUCUCC	chr17:30705081-30705338(+)$1	257	93	133	13.1908
UGCCCGGCGCCCACGCCUCCGCGGCUGUGGGUGCUCGGCC	chr2:179315341-179315606(-)$1	265	13	53	13.0725

#DB
(((((((((((.((.((.....)).)).))))))))))).	chr11:2152019-2152229(-)$1	1	125	165	13.1704
(((((((.(((((.((((...))))..))))).)))))))	chr11:2152314-2152518(-)$1	1	9	49	15.3139
.((((..(((((((.(((.....)))..))))))))))).	chr17:30707804-30708024(+)$1	1	102	142	12.9387
(((..((((((.((.((((...)))))).))))))..)))	chr11:2152083-2152289(-)$1	1	10	50	16.8350
((.(.(((((((((((((....))))...)))))))))))	chrX:153672882-153673112(+)$1	1	134	174	15.8474
((((((((((((.(((((....))))).))))))))))))	chr12:125605422-125605725(+)$1	1	106	146	14.6225
..(.(.(((.((((((((....))))).))).))).).).	chr12:53906017-53906236(-)$1	1	57	97	12.5773
(((..((((((.((.((((...)))))).))))))..)))	chr11:2152080-2152283(-)$1	1	4	44	16.8350
..(((((((((((..(((...)))...)))))))..))))	chr8:42911686-42911964(+)$1	1	219	259	14.9055
((((((((((((((((((....)).)))))).)))..)))	chr16:2514496-2514729(+)$1	1	63	103	12.9946
((((((((((.((((((....)))))).))))))).))))	chr19:56154578-56154844(+)$1	1	106	146	12.2555
(((..((((((.((.((((...)))))).))))))..)))	chr11:2152129-2152337(-)$1	1	58	98	16.8350
(((..((((((.((.((((...)))))).))))))..)))	chr11:2152227-2152443(-)$1	1	164	204	16.8350
(((...(((((((((((.....)).)))))))))...)))	chr11:2152428-2152636(-)$1	1	166	206	13.1071
.(((.(((((((...(((....)))...))))))).))).	chrX:20284728-20284965(-)$1	1	110	150	17.5754
(((((((.(((((.((((...))))..))))).)))))))	chr11:2152318-2152527(-)$1	1	18	58	15.3139
(....((.((((((.(.(....).).))))))))...)))	chr19:54057978-54058301(+)$1	1	159	199	12.9898
((((((((((((..((((....)))).)))))))......	chr15:75953268-75953549(+)$1	1	173	213	14.1859
(((..((((((.((.((((...)))))).))))))..)))	chr11:2152213-2152419(-)$1	1	140	180	16.8350
((((.(((((((..(((.....)))...))))))).))))	chr17:80441974-80442238(+)$1	1	97	137	14.5366
(((..((((((.((.((((...)))))).))))))..)))	chr11:2152157-2152378(-)$1	1	99	139	16.8350
((..((((((.((.((((...)))))).))))))..))).	chr11:2152074-2152280(-)$1	1	2	42	13.9613
..((.(((((((((((((...))))..))))))))).)))	chr2:233415044-233415328(-)$1	1	75	115	15.2169
.((((...((((((((((....))))))))))...)))).	chr16:23476268-23476532(-)$1	1	93	133	14.1119
((.(((((((((((...(....)...)))))))))).).)	chr6:117923448-117923718(-)$1	1	223	263	14.8236
((((((..((((((((((....))).)).)))))...)))	chr2:242275379-242275599(+)$1	1	169	209	14.4959
(((..((((((.((.((((...)))))).))))))..)))	chr11:2152089-2152296(-)$1	1	17	57	16.8350
(((((.(.((((..((((....)))).)))).).)))).)	chr11:72852199-72852453(-)$1	1	201	241	12.1670
((((.(((((((((((((....)))))))))).))).)))	chr17:48830579-48830819(+)$1	1	109	149	14.7157
(((.(((..(((((((((....))).))))))..))))))	chr5:178986689-178986958(+)$1	1	94	134	12.8045
(((((((.(((((.((((...))))..))))).)))))))	chr11:2152368-2152572(-)$1	1	63	103	15.3139
(((..((((((.((.((((...)))))).))))))..)))	chr11:2152117-2152320(-)$1	1	41	81	16.8350
(((..((((((.((.((((...)))))).))))))..)))	chr11:2152096-2152300(-)$1	1	21	61	16.8350
(((((((.(((((.((((...))))..))))).)))))))	chr11:2152372-2152574(-)$1	1	65	105	15.3139
(((..(((((((.(((((....))).)).)))))).....	chr15:63449292-63449589(-)$1	1	162	202	12.9044
((((.((((((((..((((...))))..))...)))))))	chr2:180128820-180129083(-)$1	1	90	130	13.7492
((((.(((.((.((((((....)))))).)).))).))))	chr16:89630341-89630590(+)$1	1	85	125	12.1141
((((((((((((((((((....)).)))))).)))..)))	chr16:2514456-2514696(+)$1	1	103	143	12.9946
.(.(((.((((((..(((....)))..)))))).))).).	chr4:15656785-15657067(-)$1	1	120	160	15.1838
((((...(((((((((((.....)).)))))))))...))	chr11:2152268-2152472(-)$1	1	1	41	12.9223
.(((.(((((((...(((....)))...))))))).))).	chrX:20284781-20285022(-)$1	1	167	207	17.5754
((.(((.((.((..((((....))))..)).)).)))..)	chr17:77760179-77760426(+)$1	1	30	70	12.3704
(..((((((.((..((((....))))..)).))))))..)	chr7:150777269-150777557(-)$1	1	98	138	13.0717
((((.((((((.(.((((....)))).).)))))).))))	chr19:2270214-2270443(+)$1	1	92	132	15.6416
(((((((.(((((.((((...))))..))))).)))))))	chr11:2152426-2152628(-)$1	1	119	159	15.3139
(((((((.(((((.((((...))))..))))).)))))))	chr11:2152415-2152622(-)$1	1	113	153	15.3139
)))))))).((((.(.(((...))).).))))(((((((.	chr5:36151710-36151956(-)$1	1	135	175	12.0719
.((((..(((((((.(((.....)))..))))))))))).	chr17:30707839-30708069(+)$1	1	67	107	12.9387
((((.((((((((..(((...)))..))))).))).))))	chr16:20911105-20911366(-)$1	1	107	147	13.3704
(((...(((...(.((((....)))).)..)))...))))	chr11:75161435-75161670(-)$1	1	33	73	15.1494
.(((.(((((((...(((....)))...))))))).))).	chrX:20284765-20284981(-)$1	1	126	166	17.5754
(((((.((((((((((((....)))))))))))).)))))	chr14:70236966-70237210(+)$1	1	76	116	13.8501
(((((((....(((.(((....))).))).)))))))...	chr17:42200636-42200908(-)$1	1	167	207	11.7099
((((((((((((((.((((...))))))))).)))..)))	chr10:79551251-79551508(-)$1	1	84	124	13.4669
))..((((((((((.(((....))).)))))))))).(((	chr17:30705081-30705338(+)$1	1	93	133	13.1908
.(((.((((((((((((.....))).))))))))).))).	chr2:179315341-179315606(-)$1	1	13	53	13.0725

#PSSM
c : 0.21	g : 0.17	d : 0.12	! : 0.08	= : 0.07	e : 0.07	# : 0.03	b : 0.03	i : 0.03	h : 0.03	[ : 0.03	" : 0.01	a : 0.01	f : 0.01	: : 0.01	
c : 0.28	g : 0.17	d : 0.17	= : 0.07	e : 0.07	! : 0.05	b : 0.03	i : 0.03	" : 0.01	# : 0.01	h : 0.01	a : 0.01	f : 0.01	
c : 0.24	d : 0.19	g : 0.17	= : 0.07	[ : 0.07	e : 0.05	i : 0.03	! : 0.03	a : 0.01	# : 0.01	h : 0.01	b : 0.01	f : 0.01	: : 0.01	
! : 0.19	g : 0.17	d : 0.17	c : 0.10	= : 0.05	a : 0.03	[ : 0.03	i : 0.03	" : 0.03	e : 0.03	f : 0.03	# : 0.01	h : 0.01	b : 0.01	: : 0.01	
[ : 0.21	! : 0.17	g : 0.16	d : 0.10	= : 0.08	" : 0.05	f : 0.05	c : 0.05	i : 0.03	a : 0.01	# : 0.01	e : 0.01	
g : 0.24	f : 0.23	c : 0.10	= : 0.08	i : 0.08	" : 0.07	[ : 0.05	! : 0.03	d : 0.03	b : 0.01	a : 0.01	
g : 0.24	f : 0.24	c : 0.12	= : 0.10	i : 0.10	! : 0.05	" : 0.03	[ : 0.03	b : 0.01	a : 0.01	
f : 0.26	g : 0.16	[ : 0.14	c : 0.14	= : 0.10	i : 0.08	! : 0.03	" : 0.01	b : 0.01	# : 0.01	
f : 0.28	g : 0.16	e : 0.14	= : 0.12	i : 0.08	c : 0.08	d : 0.01	! : 0.01	[ : 0.01	b : 0.01	: : 0.01	# : 0.01	
f : 0.28	e : 0.16	g : 0.16	= : 0.12	i : 0.08	[ : 0.05	c : 0.03	d : 0.03	b : 0.01	" : 0.01	# : 0.01	
f : 0.30	e : 0.16	g : 0.14	= : 0.12	i : 0.08	b : 0.05	[ : 0.03	d : 0.03	c : 0.01	" : 0.01	# : 0.01	
[ : 0.21	e : 0.16	g : 0.14	f : 0.12	= : 0.10	i : 0.08	b : 0.07	c : 0.03	d : 0.03	" : 0.01	
b : 0.21	e : 0.16	f : 0.12	i : 0.08	! : 0.08	= : 0.08	g : 0.05	" : 0.05	[ : 0.03	c : 0.03	a : 0.03	d : 0.01	
b : 0.21	[ : 0.17	! : 0.16	f : 0.10	i : 0.08	= : 0.08	e : 0.05	" : 0.05	g : 0.03	c : 0.01	
[ : 0.28	d : 0.26	f : 0.08	! : 0.07	" : 0.07	= : 0.05	e : 0.03	i : 0.03	c : 0.03	b : 0.03	a : 0.01	
d : 0.46	c : 0.26	f : 0.07	= : 0.05	b : 0.03	e : 0.03	a : 0.01	" : 0.01	i : 0.01	[ : 0.01	
d : 0.46	c : 0.28	b : 0.08	= : 0.05	e : 0.03	f : 0.03	[ : 0.01	" : 0.01	
d : 0.46	c : 0.24	n : 0.07	b : 0.05	= : 0.05	e : 0.03	a : 0.03	m : 0.01	f : 0.01	
m : 0.48	d : 0.19	l : 0.17	n : 0.12	c : 0.01	
m : 0.48	l : 0.39	n : 0.12	
m : 0.48	l : 0.39	n : 0.12	
m : 0.46	l : 0.21	d : 0.14	n : 0.12	c : 0.03	f : 0.01	
d : 0.46	c : 0.24	b : 0.07	n : 0.05	= : 0.05	e : 0.03	f : 0.03	a : 0.03	
d : 0.46	c : 0.28	b : 0.08	= : 0.05	e : 0.03	f : 0.03	] : 0.01	3 : 0.01	
d : 0.46	c : 0.24	] : 0.07	= : 0.05	e : 0.03	3 : 0.03	f : 0.03	a : 0.01	b : 0.01	2 : 0.01	
d : 0.32	2 : 0.16	] : 0.16	3 : 0.10	f : 0.07	= : 0.05	b : 0.03	c : 0.03	e : 0.03	i : 0.01	
b : 0.23	2 : 0.23	3 : 0.10	f : 0.10	= : 0.08	e : 0.07	] : 0.07	i : 0.05	a : 0.01	c : 0.01	
b : 0.19	e : 0.14	] : 0.10	f : 0.10	2 : 0.08	3 : 0.08	= : 0.08	i : 0.07	g : 0.03	a : 0.03	d : 0.01	c : 0.01	
] : 0.23	g : 0.16	e : 0.14	= : 0.12	f : 0.10	i : 0.07	b : 0.05	c : 0.03	d : 0.03	3 : 0.01	2 : 0.01	
f : 0.30	e : 0.16	g : 0.16	= : 0.12	i : 0.08	b : 0.07	d : 0.03	c : 0.01	2 : 0.01	] : 0.01	
f : 0.30	g : 0.17	e : 0.16	= : 0.12	i : 0.08	c : 0.03	d : 0.03	] : 0.03	3 : 0.01	b : 0.01	
f : 0.28	g : 0.17	= : 0.12	e : 0.12	] : 0.12	i : 0.08	3 : 0.01	b : 0.01	d : 0.01	c : 0.01	
f : 0.24	g : 0.19	] : 0.12	c : 0.12	= : 0.08	i : 0.08	b : 0.03	3 : 0.03	e : 0.01	a : 0.01	2 : 0.01	
g : 0.30	f : 0.24	c : 0.12	= : 0.08	i : 0.08	] : 0.05	3 : 0.03	b : 0.01	e : 0.01	2 : 0.01	
g : 0.26	f : 0.23	c : 0.17	3 : 0.08	= : 0.07	i : 0.07	2 : 0.03	> : 0.01	d : 0.01	] : 0.01	
2 : 0.24	] : 0.17	g : 0.14	3 : 0.08	= : 0.07	d : 0.07	c : 0.07	f : 0.05	i : 0.03	> : 0.01	6 : 0.01	
2 : 0.21	g : 0.17	c : 0.16	d : 0.10	3 : 0.07	] : 0.05	f : 0.05	= : 0.03	i : 0.01	a : 0.01	> : 0.01	h : 0.01	6 : 0.01	e : 0.01	: : 0.01	
c : 0.26	g : 0.17	d : 0.16	i : 0.05	e : 0.05	= : 0.03	] : 0.03	h : 0.03	f : 0.03	2 : 0.03	> : 0.01	b : 0.01	a : 0.01	6 : 0.01	3 : 0.01	: : 0.01	
c : 0.26	g : 0.17	d : 0.16	a : 0.05	e : 0.05	= : 0.03	i : 0.03	h : 0.03	] : 0.03	f : 0.03	2 : 0.03	> : 0.01	b : 0.01	6 : 0.01	: : 0.01	
c : 0.17	g : 0.16	d : 0.16	] : 0.10	e : 0.07	2 : 0.05	: : 0.05	b : 0.03	i : 0.03	h : 0.03	= : 0.01	> : 0.01	a : 0.01	6 : 0.01	[ : 0.01	f : 0.01	

#score	812.3284890491709
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_UTR_m1_run1.txt

#BEAR
hhhh^^^^^^^^^^^^^^^^^^hhhhhhh	chr4:174252814-174253092(-)$1	278	237	266	19.7381
hh[ddddwwwwwwwwwwwwwwddddhhhh	chr10:22032241-22032553(+)$1	312	159	188	20.6237
cc[ddddwwwwwwwwwwwwwwddddccc2	chr3:179342046-179342300(+)$1	254	72	101	21.0662
%%%dddd^^^^^^^^^^^^^^^^^^^ddd	chr17:38544691-38544930(-)$1	239	88	117	18.0671
^^^^^^^^^^^^^^^^^^^^^^hhhhhhh	chr1:93602579-93602835(+)$1	256	84	113	20.2585
eeee[bbwwwwwwwwwwwwwwbb]eeeee	chr2:204296397-204296646(+)$1	249	159	188	20.0741
hhhhhhhhvvvvvvvvvvvvvhhhhhhhh	chr8:101715364-101715617(-)$1	253	5	34	16.8649
cc!!cccwwwwwwwwwwwwwwccc22ccc	chr6:31698288-31698539(-)$1	251	70	99	21.8578
hhhhhzzzzzzzzzzzzzzzzzhhhhhhh	chr17:46698427-46698676(-)$1	249	103	132	16.2537
ff[ccc^^^^^^^^^^^^^^^^^^cccff	chr1:20978635-20978894(-)$1	259	137	166	20.7033
dd[ddddwwwwwwwwwwwwwwdddd]ddd	chr4:78088074-78088336(+)$1	262	57	86	20.7327
bbgggggggxxxxxxxxxxxxxxxggggg	chr1:203276584-203276885(+)$1	301	269	298	17.8981
ffffff!!bbtttttttttttbb22ffff	chr5:96365744-96365999(+)$1	255	127	156	14.8823
==========ttttttttttt========	chr15:34671260-34671628(-)$1	368	297	326	16.6350
^^^^^^^^^^^^^^^^^^^^^^ccc]ggg	chr8:128753520-128753767(+)$1	247	213	242	21.2556
^^^^^^^^^^^^^^^^^^^^^^ccc]ggg	chr1:53692502-53692756(-)$1	254	65	94	21.2556
hhhhhhhxxxxxxxxxxxxxxxhhhhhhh	chr3:9519599-9519840(+)$1	241	209	238	18.1236
gggggggauuuuuuuuuuuua]ggggggg	chr12:89984431-89984714(-)$1	283	202	231	21.1657
gggggg[cccsssssssssscccgggggg	chr10:74035222-74035599(+)$1	377	198	227	13.8393
cc[ccc^^^^^^^^^^^^^^^^^^ccc]c	chr8:23429807-23430070(+)$1	263	155	184	21.2785
DDeeeeeyyyyyyyyyyyyyyyyeeeee:	chr20:45838945-45839220(-)$1	275	22	51	18.2854
ff[dddd^^^^^^^^^^^^^^^^^^dddd	chr8:23429727-23430007(+)$1	280	104	133	19.6965
!gggggggvvvvvvvvvvvvvgggggggg	chr8:101715439-101715686(-)$1	247	74	103	20.2234
hhhhhzzzzzzzzzzzzzzzzzhhhhhhh	chr17:46698476-46698707(-)$1	231	134	163	16.2537
::ccc^^^^^^^^^^^^^^^^^^^ccc:B	chr19:50886019-50886276(+)$1	257	220	249	16.9684
"""ddddtttttttttttdddd]gggggg	chr22:22114551-22114907(-)$1	356	156	185	15.8724
=========uuuuuuuuuuuu========	chr12:25361984-25362233(-)$1	249	100	129	20.1158
g!!eeeeeuuuuuuuuuuuueeeee333g	chr1:203823020-203823281(+)$1	261	9	38	19.9439
eeffffffuuuuuuuuuuuuffffff000	chr6:17615241-17615496(-)$1	255	121	150	16.8062
[ddddyyyyyyyyyyyyyyyydddd]eee	chr19:46029981-46030282(+)$1	301	64	93	21.2931
=======xxxxxxxxxxxxxxx=======	chr15:77242025-77242307(+)$1	282	225	254	20.6031
ff[ccc!!cccssssssssssccc]ccc]	chr1:202860148-202860430(-)$1	282	49	78	13.5590
gggggggxxxxxxxxxxxxxxxggggggg	chr11:85989505-85989841(+)$1	336	63	92	20.6733
d!!ddddvvvvvvvvvvvvvdddd22ddd	chr5:74657037-74657311(+)$1	274	172	201	18.6288
[gggggggvvvvvvvvvvvvvgggggggg	chr14:35870988-35871277(-)$1	289	114	143	20.1704
"""eeeeeuuuuuuuuuuuueeeee4444	chrX:123234620-123234884(+)$1	264	161	190	19.2925
ggggddddzzzzzzzzzzzzzzzzzdddd	chr3:128338890-128339159(-)$1	269	237	266	15.6731
iiiiiiiiiuuuuuuuuuuuuiiiiiiii	chr5:151184283-151184535(+)$1	252	37	66	19.8065
e^^^^^^^^^^^^^^^^^^^^eeeeeddd	chr7:5646097-5646351(+)$1	254	152	181	19.8395
BBeeeeeccctttttttttttccc]eeee	chr17:27589256-27589525(-)$1	269	62	91	14.5978
hhhhhhhhvvvvvvvvvvvvvhhhhhhhh	chr8:101715417-101715639(-)$1	222	27	56	16.8649
^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr17:7757640-7757915(+)$1	275	191	220	20.1973
(dddd^^^^^^^^^^^^^^^^^^^^^ddd	chr16:4307125-4307413(-)$1	288	83	112	19.3544
^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr11:47491703-47491931(-)$1	228	72	101	21.3342
^^^^^^^^^^^^^^^^^^^^^ffffffii	chr17:47676744-47677007(-)$1	263	142	171	19.9796
###cccxxxxxxxxxxxxxxxccc4444d	chr5:38937946-38938234(-)$1	288	95	124	19.9041
eeeeee[atttttttttttaeeeee22ee	chr16:2821252-2821486(+)$1	234	47	76	16.2836
ee[ffffffuuuuuuuuuuuuffffff22	chr1:150237738-150238028(-)$1	290	193	222	18.0936
hhhhzzzzzzzzzzzzzzzzzhhhhhhhh	chr17:56080815-56081113(-)$1	298	184	213	15.6039
fff^^^^^^^^^^^^^^^^^^ffffff44	chr8:101734082-101734294(-)$1	212	137	166	19.3551
fff^^^^^^^^^^^^^^^^^^ffffff44	chr8:101734094-101734316(-)$1	222	159	188	19.3551
"""ccc^^^^^^^^^^^^^^^^^^ccc44	chr19:39220609-39220885(+)$1	276	44	73	21.0248
gggggggxxxxxxxxxxxxxxxggggggg	chr9:135973042-135973335(-)$1	293	115	144	20.6733
fff[cccvvvvvvvvvvvvvccc]fffff	chr2:68405914-68406198(-)$1	284	110	139	18.8875
!!eeeeezzzzzzzzzzzzzzzzzeeeee	chr6:43753844-43754101(+)$1	257	130	159	16.9615
cc[ddddtttttttttttdddd]cccddd	chr16:56643189-56643481(+)$1	292	235	264	15.3118
gggggggyyyyyyyyyyyyyyyygggggg	chr1:29474185-29474471(-)$1	286	37	66	22.7707
^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr11:47491731-47491997(-)$1	266	138	167	21.3342

#otherMatches

#Seq PSSM
auuauuuCUAUUGUCUUUGUCUUAAUAUG	chr4:174252814-174253092(-)$1	278	237	266	19.7381
UGUGGUUUAUUUUACUUAUUUAACCCACU	chr10:22032241-22032553(+)$1	312	159	188	20.6237
UAAUAAUGUUAAGCACCAGUAAUUAUAGU	chr3:179342046-179342300(+)$1	254	72	101	21.0662
CUAUGUUUUUCUAUUAGCUAAAUUCCAAC	chr17:38544691-38544930(-)$1	239	88	117	18.0671
ACUAUCUUUCUUAAAAAAAAAAAAAAGUC	chr1:93602579-93602835(+)$1	256	84	113	20.2585
UUUUGCAACUUAAGAAUUCUAUGGAAAAG	chr2:204296397-204296646(+)$1	249	159	188	20.0741
UAAUUUGUUUUUUUAACAUUUACAGAUUG	chr8:101715364-101715617(-)$1	253	5	34	16.8649
AUGAGGGAAAGAAAUGGGGGGCCUGGGUC	chr6:31698288-31698539(-)$1	251	70	99	21.8578
GUUUUGGAAGAAAAAAAGAAAAAGAACAA	chr17:46698427-46698676(-)$1	249	103	132	16.2537
CUGUGGGAGAUGCAACACUGAGAGCCAAG	chr1:20978635-20978894(-)$1	259	137	166	20.7033
UGAACAUGUAAAUCUUUUAAAAUGUACAU	chr4:78088074-78088336(+)$1	262	57	86	20.7327
CUAGCCAAGGAGAAGUGGGAGACGUUUGG	chr1:203276584-203276885(+)$1	301	269	298	17.8981
AAAAUAGUCUUCUUUAAUCCUAGUGUGUU	chr5:96365744-96365999(+)$1	255	127	156	14.8823
GUGGCAUUAUUGACUGCUGAUGUGAUGCU	chr15:34671260-34671628(-)$1	368	297	326	16.6350
UUGUUUUCAUCAAUUGCCCCUUCAGAGGG	chr8:128753520-128753767(+)$1	247	213	242	21.2556
GGUGGGUGGGAGUAGAAAAUUUUGUGUAU	chr1:53692502-53692756(-)$1	254	65	94	21.2556
UCUUAACCAUAAUAAUCAUAAAGUUGAGA	chr3:9519599-9519840(+)$1	241	209	238	18.1236
GGAUCAUCAGUAGUACCCAAGCAUGGUCC	chr12:89984431-89984714(-)$1	283	202	231	21.1657
GUUUUGUAUCUUGUUUUUCUGAUCGGAGC	chr10:74035222-74035599(+)$1	377	198	227	13.8393
GCAACAAAGUAAUAAAUCAGUGAAUGUGG	chr8:23429807-23430070(+)$1	263	155	184	21.2785
CCUGUGCUUUUGGUGUAAAUAAUGUACAA	chr20:45838945-45839220(-)$1	275	22	51	18.2854
UAGAAGUUUUUGAAUUUGUGUGUGUGCUU	chr8:23429727-23430007(+)$1	280	104	133	19.6965
UAAUUUGUUUUUUUAACAUUUACAGAUUG	chr8:101715439-101715686(-)$1	247	74	103	20.2234
GUUUUGGAAGAAAAAAAGAAAAAGAACAA	chr17:46698476-46698707(-)$1	231	134	163	16.2537
CAGGAAAAUAAAAUAUGAAUACAAUCCAG	chr19:50886019-50886276(+)$1	257	220	249	16.9684
UUUCAUCUUAAUUCUUUUGAUGUUGUAAA	chr22:22114551-22114907(-)$1	356	156	185	15.8724
uuuuucuauaaaaagaaaaaaauGGAAAA	chr12:25361984-25362233(-)$1	249	100	129	20.1158
ACCAUGGAUUUUCUACUUAUUUCGUUUUU	chr1:203823020-203823281(+)$1	261	9	38	19.9439
GUGACUUUGGAUAAUAAGGAAAAGUUUAA	chr6:17615241-17615496(-)$1	255	121	150	16.8062
UGCUGUAACUUUUUGGAACCUCAGUUUUU	chr19:46029981-46030282(+)$1	301	64	93	21.2931
UUGUUUGCUUUUCUUUAACUUUCAGAUAA	chr15:77242025-77242307(+)$1	282	225	254	20.6031
UGUGGGAAUGUGAUAACCUAAACAACCUU	chr1:202860148-202860430(-)$1	282	49	78	13.5590
AUACUUUUGCCUAAUCAAAAUUAGAGUGU	chr11:85989505-85989841(+)$1	336	63	92	20.6733
GUUCAAGAAAUAAAAAUCAACUUGUGUAC	chr5:74657037-74657311(+)$1	274	172	201	18.6288
AUUUUUCUAAAAAAAGAAAAAAGAAGAAA	chr14:35870988-35871277(-)$1	289	114	143	20.1704
AUAUGAAUUCUCUUACAUUUAUUUACUGG	chrX:123234620-123234884(+)$1	264	161	190	19.2925
UUAUGCCCUUCUAAUUCUGAUGUUUGGGU	chr3:128338890-128339159(-)$1	269	237	266	15.6731
AACUGAUAGGCUUUUCUUGAACUGUUAGU	chr5:151184283-151184535(+)$1	252	37	66	19.8065
GAAAUAGCGAAAUAAAAUAACUCAGUCUG	chr7:5646097-5646351(+)$1	254	152	181	19.8395
CCACAUAACUGAAGUGAAAAAAGUCUGUG	chr17:27589256-27589525(-)$1	269	62	91	14.5978
UAAUUUGUUUUUUUAACAUUUACAGAUUG	chr8:101715417-101715639(-)$1	222	27	56	16.8649
UCACCCCCACCCCCUUUUCUUUUUAAGUG	chr17:7757640-7757915(+)$1	275	191	220	20.1973
ucuuuuuuuuuuuuuuuuACAAUUUUGAG	chr16:4307125-4307413(-)$1	288	83	112	19.3544
aaagaaaacaaaaaaaaaaaagaaaaaaa	chr11:47491703-47491931(-)$1	228	72	101	21.3342
acaaaacaaaaacagaacaaaagaagaga	chr17:47676744-47677007(-)$1	263	142	171	19.9796
GUGAUUUUCUUGUUUUUGUAUAAUGUGUA	chr5:38937946-38938234(-)$1	288	95	124	19.9041
AGGUUGUGAACCCCUCCCCCCAACUUUUC	chr16:2821252-2821486(+)$1	234	47	76	16.2836
UGUGAUUUUGACUAAUAAAAAAGAAUUUG	chr1:150237738-150238028(-)$1	290	193	222	18.0936
GGAGUUGAAGAAUAAGUAGGUUUCCAAUU	chr17:56080815-56081113(-)$1	298	184	213	15.6039
UAUUUUUUUUCUUCCUCUUUUAUAAAAUA	chr8:101734082-101734294(-)$1	212	137	166	19.3551
UAUUUUUUUUCUUCCUCUUUUAUAAAAUA	chr8:101734094-101734316(-)$1	222	159	188	19.3551
CCCCUGAACCGCACCCCAUCCCACCAGCC	chr19:39220609-39220885(+)$1	276	44	73	21.0248
AAGCAAAAAGAAAAAAAAAAUGUUUGUUU	chr9:135973042-135973335(-)$1	293	115	144	20.6733
UGUUGAAUGUUUAGUUUUUCUUCUGCAUG	chr2:68405914-68406198(-)$1	284	110	139	18.8875
AUAGAGAAUUCUACAUACUAAAUCUCUCU	chr6:43753844-43754101(+)$1	257	130	159	16.9615
CCUUUAUAUGCCUUAAAAAUAACGGACUG	chr16:56643189-56643481(+)$1	292	235	264	15.3118
CUGCAGUAACCCAUAGGAAAUAAACUGUA	chr1:29474185-29474471(-)$1	286	37	66	22.7707
aaagaaaacaaaaaaaaaaaagaaaaaaa	chr11:47491731-47491997(-)$1	266	138	167	21.3342

#DB
((((..................)))))))	chr4:174252814-174253092(-)$1	1	237	266	19.7381
((.((((..............))))))))	chr10:22032241-22032553(+)$1	1	159	188	20.6237
((.((((..............))))))).	chr3:179342046-179342300(+)$1	1	72	101	21.0662
...((((...................)))	chr17:38544691-38544930(-)$1	1	88	117	18.0671
......................)))))))	chr1:93602579-93602835(+)$1	1	84	113	20.2585
((((.((..............)).)))))	chr2:204296397-204296646(+)$1	1	159	188	20.0741
((((((((.............))))))))	chr8:101715364-101715617(-)$1	1	5	34	16.8649
((..(((..............)))..)))	chr6:31698288-31698539(-)$1	1	70	99	21.8578
(((((.................)))))))	chr17:46698427-46698676(-)$1	1	103	132	16.2537
((.(((..................)))))	chr1:20978635-20978894(-)$1	1	137	166	20.7033
((.((((..............)))).)))	chr4:78088074-78088336(+)$1	1	57	86	20.7327
))(((((((...............)))))	chr1:203276584-203276885(+)$1	1	269	298	17.8981
((((((..((...........))..))))	chr5:96365744-96365999(+)$1	1	127	156	14.8823
((((((((((...........))))))))	chr15:34671260-34671628(-)$1	1	297	326	16.6350
......................))).)))	chr8:128753520-128753767(+)$1	1	213	242	21.2556
......................))).)))	chr1:53692502-53692756(-)$1	1	65	94	21.2556
(((((((...............)))))))	chr3:9519599-9519840(+)$1	1	209	238	18.1236
((((((((............).)))))))	chr12:89984431-89984714(-)$1	1	202	231	21.1657
((((((.(((..........)))))))))	chr10:74035222-74035599(+)$1	1	198	227	13.8393
((.(((..................))).)	chr8:23429807-23430070(+)$1	1	155	184	21.2785
(((((((................))))).	chr20:45838945-45839220(-)$1	1	22	51	18.2854
((.((((..................))))	chr8:23429727-23430007(+)$1	1	104	133	19.6965
.(((((((.............))))))))	chr8:101715439-101715686(-)$1	1	74	103	20.2234
(((((.................)))))))	chr17:46698476-46698707(-)$1	1	134	163	16.2537
..(((...................))).)	chr19:50886019-50886276(+)$1	1	220	249	16.9684
...((((...........)))).))))))	chr22:22114551-22114907(-)$1	1	156	185	15.8724
(((((((((............))))))))	chr12:25361984-25362233(-)$1	1	100	129	20.1158
(..(((((............)))))...)	chr1:203823020-203823281(+)$1	1	9	38	19.9439
((((((((............))))))...	chr6:17615241-17615496(-)$1	1	121	150	16.8062
.((((................)))).)))	chr19:46029981-46030282(+)$1	1	64	93	21.2931
(((((((...............)))))))	chr15:77242025-77242307(+)$1	1	225	254	20.6031
((.(((..(((..........))).))).	chr1:202860148-202860430(-)$1	1	49	78	13.5590
(((((((...............)))))))	chr11:85989505-85989841(+)$1	1	63	92	20.6733
(..((((.............))))..)))	chr5:74657037-74657311(+)$1	1	172	201	18.6288
.(((((((.............))))))))	chr14:35870988-35871277(-)$1	1	114	143	20.1704
...(((((............)))))....	chrX:123234620-123234884(+)$1	1	161	190	19.2925
))))((((.................))))	chr3:128338890-128339159(-)$1	1	237	266	15.6731
(((((((((............))))))))	chr5:151184283-151184535(+)$1	1	37	66	19.8065
(....................))))))))	chr7:5646097-5646351(+)$1	1	152	181	19.8395
((((((((((...........))).))))	chr17:27589256-27589525(-)$1	1	62	91	14.5978
((((((((.............))))))))	chr8:101715417-101715639(-)$1	1	27	56	16.8649
..........................)))	chr17:7757640-7757915(+)$1	1	191	220	20.1973
.((((.....................)))	chr16:4307125-4307413(-)$1	1	83	112	19.3544
.......................))))))	chr11:47491703-47491931(-)$1	1	72	101	21.3342
.....................))))))))	chr17:47676744-47677007(-)$1	1	142	171	19.9796
...(((...............)))....)	chr5:38937946-38938234(-)$1	1	95	124	19.9041
((((((.(...........))))))..))	chr16:2821252-2821486(+)$1	1	47	76	16.2836
((.((((((............))))))..	chr1:150237738-150238028(-)$1	1	193	222	18.0936
((((.................))))))))	chr17:56080815-56081113(-)$1	1	184	213	15.6039
(((..................))))))..	chr8:101734082-101734294(-)$1	1	137	166	19.3551
(((..................))))))..	chr8:101734094-101734316(-)$1	1	159	188	19.3551
...(((..................)))..	chr19:39220609-39220885(+)$1	1	44	73	21.0248
(((((((...............)))))))	chr9:135973042-135973335(-)$1	1	115	144	20.6733
(((.(((.............))).)))))	chr2:68405914-68406198(-)$1	1	110	139	18.8875
..(((((.................)))))	chr6:43753844-43754101(+)$1	1	130	159	16.9615
((.((((...........)))).))))))	chr16:56643189-56643481(+)$1	1	235	264	15.3118
(((((((................))))))	chr1:29474185-29474471(-)$1	1	37	66	22.7707
.......................))))))	chr11:47491731-47491997(-)$1	1	138	167	21.3342

#PSSM
h : 0.13	^ : 0.12	f : 0.12	g : 0.12	e : 0.08	c : 0.06	= : 0.05	" : 0.05	d : 0.03	! : 0.03	[ : 0.03	% : 0.01	b : 0.01	D : 0.01	: : 0.01	i : 0.01	B : 0.01	( : 0.01	# : 0.01	
h : 0.13	^ : 0.13	g : 0.13	f : 0.12	c : 0.06	e : 0.06	d : 0.05	= : 0.05	" : 0.05	! : 0.05	% : 0.01	b : 0.01	D : 0.01	: : 0.01	i : 0.01	B : 0.01	# : 0.01	
[ : 0.15	g : 0.15	^ : 0.13	h : 0.12	e : 0.08	f : 0.08	! : 0.05	= : 0.05	" : 0.05	d : 0.03	% : 0.01	c : 0.01	i : 0.01	# : 0.01	
d : 0.17	^ : 0.17	g : 0.15	h : 0.12	e : 0.12	c : 0.10	f : 0.05	= : 0.05	! : 0.01	i : 0.01	[ : 0.01	
^ : 0.18	d : 0.18	c : 0.13	g : 0.13	e : 0.10	h : 0.08	f : 0.05	= : 0.05	[ : 0.01	i : 0.01	z : 0.01	
^ : 0.22	d : 0.15	g : 0.13	c : 0.12	e : 0.10	h : 0.05	z : 0.05	f : 0.05	= : 0.05	b : 0.01	y : 0.01	i : 0.01	
^ : 0.27	d : 0.15	g : 0.12	e : 0.08	h : 0.05	z : 0.05	= : 0.05	c : 0.03	! : 0.03	[ : 0.03	f : 0.03	b : 0.01	y : 0.01	i : 0.01	x : 0.01	
^ : 0.31	w : 0.08	x : 0.08	z : 0.06	g : 0.05	y : 0.05	h : 0.03	! : 0.03	= : 0.03	a : 0.03	c : 0.03	t : 0.03	e : 0.03	f : 0.03	v : 0.03	d : 0.01	i : 0.01	
^ : 0.31	v : 0.10	w : 0.08	z : 0.08	x : 0.08	u : 0.06	c : 0.05	y : 0.05	t : 0.05	= : 0.03	g : 0.01	b : 0.01	i : 0.01	f : 0.01	
^ : 0.31	u : 0.12	v : 0.10	x : 0.10	w : 0.08	z : 0.08	c : 0.05	y : 0.05	t : 0.05	b : 0.01	= : 0.01	
^ : 0.31	u : 0.12	v : 0.10	x : 0.10	t : 0.10	w : 0.08	z : 0.08	y : 0.05	s : 0.01	c : 0.01	
^ : 0.31	u : 0.12	v : 0.10	x : 0.10	t : 0.10	w : 0.08	z : 0.08	y : 0.05	s : 0.03	
^ : 0.31	u : 0.12	v : 0.10	x : 0.10	t : 0.10	w : 0.08	z : 0.08	y : 0.05	s : 0.03	
^ : 0.31	u : 0.12	v : 0.10	x : 0.10	t : 0.10	w : 0.08	z : 0.08	y : 0.05	s : 0.03	
^ : 0.31	u : 0.12	v : 0.10	x : 0.10	t : 0.10	w : 0.08	z : 0.08	y : 0.05	s : 0.03	
^ : 0.31	u : 0.12	v : 0.10	x : 0.10	t : 0.10	w : 0.08	z : 0.08	y : 0.05	s : 0.03	
^ : 0.31	u : 0.12	v : 0.10	x : 0.10	t : 0.10	w : 0.08	z : 0.08	y : 0.05	s : 0.03	
^ : 0.31	u : 0.12	v : 0.10	x : 0.10	t : 0.10	w : 0.08	z : 0.08	y : 0.05	s : 0.03	
^ : 0.31	u : 0.12	v : 0.10	x : 0.10	w : 0.08	z : 0.08	t : 0.06	y : 0.05	s : 0.03	d : 0.03	
^ : 0.31	u : 0.12	v : 0.10	x : 0.10	w : 0.08	z : 0.08	t : 0.05	y : 0.05	s : 0.03	d : 0.03	a : 0.01	
^ : 0.31	x : 0.10	w : 0.08	z : 0.08	v : 0.06	t : 0.05	y : 0.05	d : 0.05	u : 0.05	e : 0.05	c : 0.03	a : 0.01	f : 0.01	s : 0.01	
^ : 0.24	d : 0.12	c : 0.10	x : 0.08	f : 0.08	z : 0.06	e : 0.06	h : 0.05	b : 0.03	= : 0.03	y : 0.03	g : 0.03	] : 0.01	i : 0.01	
^ : 0.17	h : 0.13	c : 0.13	d : 0.08	g : 0.08	f : 0.08	e : 0.06	= : 0.05	b : 0.03	y : 0.03	] : 0.03	z : 0.03	x : 0.01	i : 0.01	
g : 0.17	h : 0.13	^ : 0.13	c : 0.12	d : 0.08	e : 0.08	f : 0.08	= : 0.05	] : 0.03	z : 0.03	x : 0.01	2 : 0.01	i : 0.01	
g : 0.18	h : 0.13	e : 0.12	c : 0.12	f : 0.10	d : 0.06	^ : 0.06	2 : 0.05	= : 0.05	] : 0.03	z : 0.01	i : 0.01	4 : 0.01	
g : 0.18	h : 0.15	c : 0.12	f : 0.12	e : 0.08	] : 0.06	^ : 0.05	2 : 0.05	= : 0.05	d : 0.03	4 : 0.03	3 : 0.01	i : 0.01	
g : 0.22	h : 0.15	d : 0.15	c : 0.12	f : 0.10	e : 0.08	= : 0.05	4 : 0.03	3 : 0.01	0 : 0.01	i : 0.01	2 : 0.01	
g : 0.22	h : 0.15	d : 0.15	e : 0.10	4 : 0.08	c : 0.05	f : 0.05	= : 0.05	i : 0.03	] : 0.01	: : 0.01	3 : 0.01	0 : 0.01	2 : 0.01	
g : 0.24	d : 0.17	h : 0.15	e : 0.08	4 : 0.06	f : 0.05	= : 0.05	2 : 0.03	c : 0.03	i : 0.03	: : 0.01	B : 0.01	0 : 0.01	] : 0.01	

#score	1094.1695515012714
#seq	58
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_UTR_m1_run2.txt

#BEAR
ddda[cccuuuuuuuuuuuuccc]a]d	chr3:53260741-53260962(-)$1	221	51	78	23.7869
fff[cccvvvvvvvvvvvvvccc333f	chr19:49993680-49993888(+)$1	208	20	47	24.3958
Dcccddddtttttttttttdddd333c	chr21:34799090-34799313(+)$1	223	107	134	22.7669
dddeeeeettttttttttteeeee]dd	chr1:46782175-46782382(+)$1	207	121	148	23.1357
gggggg[attttttttttta]gggggg	chr4:99993263-99993492(-)$1	229	143	170	24.7264
gggggggvvvvvvvvvvvvvggggggg	chr10:17756745-17756998(+)$1	253	51	78	24.6222
iiiiiiiitttttttttttiiiiiiii	chr2:17889817-17890114(-)$1	297	17	44	23.7087
!!fffffftttttttttttffffff33	chr4:25930719-25931010(+)$1	291	53	80	23.9610
!ccc[ccctttttttttttccc]ccce	chr19:9273758-9273994(+)$1	236	172	199	24.0213
eccc[ccctttttttttttccc333cc	chrX:151909265-151909492(+)$1	227	89	116	23.9367
dd!!cccvvvvvvvvvvvvvccc]ddd	chr21:34793869-34794093(+)$1	224	181	208	23.6575
c[eeeeewwwwwwwwwwwwwweeeeec	chr12:54745381-54745615(+)$1	234	11	38	23.1932
ccc[dddduuuuuuuuuuuudddd]cc	chr19:55741292-55741558(-)$1	266	92	119	24.0193
gggggggvvvvvvvvvvvvvggggggg	chr19:34891342-34891578(+)$1	236	161	188	24.6222
Fggggggguuuuuuuuuuuuggggggg	chr1:24745859-24746127(+)$1	268	8	35	24.2808
"""ddddwwwwwwwwwwwwwwdddd33	chr12:56109812-56110039(+)$1	227	114	141	23.1826
ffffffyyyyyyyyyyyyyyyyfffff	chr19:49513182-49513423(+)$1	241	181	208	21.8115
####ddddvvvvvvvvvvvvvdddd55	chr12:58220772-58220977(-)$1	205	20	47	21.9295
Hgggggggtttttttttttggggggge	chr19:13889102-13889346(+)$1	244	135	162	23.4949
[ffffffvvvvvvvvvvvvvffffff]	chr2:159490612-159490863(+)$1	251	137	164	23.9481
ffffddddtttttttttttdddd]fff	chr5:138704527-138704747(+)$1	220	87	114	23.3645
[ffffffwwwwwwwwwwwwwwffffff	chr9:37588816-37589029(-)$1	213	127	154	22.7697
!bb[ddddtttttttttttdddd22bb	chr17:4851545-4851781(-)$1	236	156	183	22.4026
ff!!dddduuuuuuuuuuuudddd22f	chr21:40550353-40550633(-)$1	280	88	115	23.8443
$$ffffffuuuuuuuuuuuuffffff5	chr19:39979175-39979386(+)$1	211	66	93	22.9656
dddeeeeettttttttttteeeee]dd	chr1:46782147-46782375(+)$1	228	149	176	23.1357
=!!ddddvvvvvvvvvvvvvdddd22=	chr12:53431092-53431314(+)$1	222	89	116	24.0503
c[eeeeewwwwwwwwwwwwwweeeee]	chr17:74730370-74730576(-)$1	206	172	199	23.2548
::eeeeeuuuuuuuuuuuueeeeeddd	chr3:14153599-14153817(-)$1	218	175	202	21.6081
gggggggvvvvvvvvvvvvvggggggg	chr17:48212202-48212480(-)$1	278	0	27	24.6222
ggggggyyyyyyyyyyyyyyyyggggg	chr8:117669430-117669654(-)$1	224	99	126	22.6211
bb####bbtttttttttttbb4444bb	chr11:59569918-59570168(+)$1	250	85	112	21.4069
:gggggggtttttttttttggggggg:	chr1:223962912-223963119(+)$1	207	78	105	22.3599
%%fffffftttttttttttffffff22	chr14:102552277-102552483(-)$1	206	55	82	22.1742
bb[eeeeeuuuuuuuuuuuueeeee]b	chr1:35321005-35321340(-)$1	335	305	332	23.8330
gggggggwwwwwwwwwwwwwwgggggg	chr16:85840243-85840445(+)$1	202	63	90	23.5010
a[ddddbbuuuuuuuuuuuubb]dddd	chr1:22173749-22173984(-)$1	235	52	79	22.8551
:eeeeeyyyyyyyyyyyyyyyyeeeee	chr1:151847162-151847464(-)$1	302	144	171	21.1956
eeeee[bbtttttttttttbb]eeeee	chr1:26607453-26607662(+)$1	209	89	116	22.8011
eeea[ccctttttttttttccc]a]ee	chr4:39077494-39077766(+)$1	272	101	128	23.5336
ff!!dddduuuuuuuuuuuudddd333	chr12:49663513-49663737(+)$1	224	131	158	24.3963
[ddddcccuuuuuuuuuuuuccc]ddd	chr6:170886647-170886854(-)$1	207	53	80	23.7563
cc[eeeeeuuuuuuuuuuuueeeee]c	chr19:36604979-36605211(-)$1	232	102	129	24.4919
[ccc[cccuuuuuuuuuuuuccccccc	chr17:28618316-28618617(-)$1	301	124	151	24.4066
$$ffffffuuuuuuuuuuuuffffff5	chr22:30985139-30985356(-)$1	217	16	43	22.9656
b[eeeeevvvvvvvvvvvvveeeeebb	chr11:61608002-61608242(+)$1	240	103	130	23.6523
!gggggggtttttttttttggggggge	chr7:16666668-16666904(-)$1	236	200	227	24.2150
da[dddduuuuuuuuuuuudddd22a]	chr1:179012850-179013071(+)$1	221	74	101	23.0881
========ttttttttttt========	chr21:40549350-40549575(-)$1	225	95	122	24.3291
ccc[ddddtttttttttttddddccc4	chr7:148427044-148427359(+)$1	315	196	223	23.4765
iiiiiiiwwwwwwwwwwwwwwiiiiii	chr2:86438376-86438643(+)$1	267	89	116	23.1971
f[eeeeevvvvvvvvvvvvveeeee]f	chr12:64844288-64844548(+)$1	260	123	150	24.3548
"""ddddwwwwwwwwwwwwwwdddddd	chr6:33243473-33243678(+)$1	205	129	156	22.6293
[gggggggtttttttttttggggggga	chr1:154247768-154248000(+)$1	232	86	113	24.1975
e!!cccyyyyyyyyyyyyyyyyccc22	chr10:120444885-120445144(-)$1	259	85	112	21.9511
ff[eeeeeuuuuuuuuuuuueeeeeff	chr15:75146260-75146561(-)$1	301	4	31	24.2318
fffff[bbvvvvvvvvvvvvvbb]fff	chr1:157093427-157093688(-)$1	261	34	61	22.5735
gggggggwwwwwwwwwwwwwwgggggg	chr19:50410654-50410875(-)$1	221	2	29	23.5010
""eeeeeuuuuuuuuuuuueeeee22c	chr18:34378362-34378587(-)$1	225	136	163	23.9874
"""ddddwwwwwwwwwwwwwwdddd22	chr18:29671756-29672014(+)$1	258	50	77	22.7403
ffff!!bbtttttttttttbb22ffff	chr7:107253741-107253978(+)$1	237	90	117	22.3649
"ffffffuuuuuuuuuuuuffffffae	chr12:27869191-27869441(+)$1	250	70	97	23.3837
!eeeeeyyyyyyyyyyyyyyyyeeeee	chr2:106761547-106761807(-)$1	260	9	36	22.2124
b[ffffffuuuuuuuuuuuuffffff]	chr12:120636558-120636761(-)$1	203	80	107	23.8342

#otherMatches

#Seq PSSM
UGUGCUCUCCCUCACAGAAAAGAUCAA	chr3:53260741-53260962(-)$1	221	51	78	23.7869
GGGCAGGCCUCACACUCUCCCCUCUCC	chr19:49993680-49993888(+)$1	208	20	47	24.3958
CGGGCCUCCAGAAAACAUUGAGGUGAC	chr21:34799090-34799313(+)$1	223	107	134	22.7669
AUCAGAAUAUUUCCUUAUGGUUUUGGA	chr1:46782175-46782382(+)$1	207	121	148	23.1357
UUAUUAAGGAAUAUUUUAACAUAAUAA	chr4:99993263-99993492(-)$1	229	143	170	24.7264
GGUGGCAGAUACCUGCUAAAUGCCACU	chr10:17756745-17756998(+)$1	253	51	78	24.6222
uauauacacaauuuucauauguauaua	chr2:17889817-17890114(-)$1	297	17	44	23.7087
UAGGGUUAAAAGUGUGGUCUGAUCCAU	chr4:25930719-25931010(+)$1	291	53	80	23.9610
CGACCGUGCAUAUGAAAACCACAGUCU	chr19:9273758-9273994(+)$1	236	172	199	24.0213
GGGCAGCCAGUAAUUCCCAGGCAAGGC	chrX:151909265-151909492(+)$1	227	89	116	23.9367
UAUCGACUCCACACACCUCUGUCCUGC	chr21:34793869-34794093(+)$1	224	181	208	23.6575
UUGGGUCUAAUCUUUCCCCUUGACCCA	chr12:54745381-54745615(+)$1	234	11	38	23.1932
AGACGGCCACGCCCACACCCGGCCUUU	chr19:55741292-55741558(-)$1	266	92	119	24.0193
CUCGAUGGUUCUAAAAACUGCAUUGAG	chr19:34891342-34891578(+)$1	236	161	188	24.6222
AAGGCUGUAAAUCUGCCAAAACAGCCU	chr1:24745859-24746127(+)$1	268	8	35	24.2808
CCCGCCUCCUAAAAGAACACCAGGCCA	chr12:56109812-56110039(+)$1	227	114	141	23.1826
GGGGUGUUUUCAUCUCCUCCAUCACCC	chr19:49513182-49513423(+)$1	241	181	208	21.8115
CUCUUCCCAUAAUUAUGCCAAGGGGUA	chr12:58220772-58220977(-)$1	205	20	47	21.9295
CAGGUUUAACCCAGAACAAUAAACCUG	chr19:13889102-13889346(+)$1	244	135	162	23.4949
AUGAUGGCACCACAAGAUCCCCAUCAA	chr2:159490612-159490863(+)$1	251	137	164	23.9481
UCUUGCAUGCUUAAUAAAAGUGCUGAG	chr5:138704527-138704747(+)$1	220	87	114	23.3645
GCAUAUGAAGACAGGACAUCACAUAUG	chr9:37588816-37589029(-)$1	213	127	154	22.7697
UCGUGGGCUACAAGGACUCGCCCUCCG	chr17:4851545-4851781(-)$1	236	156	183	22.4026
UGCAGAUAACUAUUCUCACAUGUCGAC	chr21:40550353-40550633(-)$1	280	88	115	23.8443
ACCCGCUGGCGGCUUUCAAACAGCGGC	chr19:39979175-39979386(+)$1	211	66	93	22.9656
AUCAGAAUAUUUCCUUAUGGUUUUGGA	chr1:46782147-46782375(+)$1	228	149	176	23.1357
UGGCUUCACAGAUGCACGAAGGAGAGA	chr12:53431092-53431314(+)$1	222	89	116	24.0503
CUUUUUUUCCCUCUUCCCCCUAAAAAU	chr17:74730370-74730576(-)$1	206	172	199	23.2548
UAGCAGCAAGAGAGGAAACGUUGUGAA	chr3:14153599-14153817(-)$1	218	175	202	21.6081
CAGCCUCUUUCUUGCCCCAUGGGGCUG	chr17:48212202-48212480(-)$1	278	0	27	24.6222
AGAUCCCAUAAAAACUGCCCAAGGAUC	chr8:117669430-117669654(-)$1	224	99	126	22.6211
GCAACAAGAGACAAAAUAACUAAAGGC	chr11:59569918-59570168(+)$1	250	85	112	21.4069
AGCUGUUGAUUCUACCAAACAACAGUC	chr1:223962912-223963119(+)$1	207	78	105	22.3599
GAUCCCAGUAAAUUAGACUCUGGGAAA	chr14:102552277-102552483(-)$1	206	55	82	22.1742
GAGAGUUAUGAGAUGAACAUUGGCUGU	chr1:35321005-35321340(-)$1	335	305	332	23.8330
GAGAUAGUCUUGCCCCAUAACCUGUCU	chr16:85840243-85840445(+)$1	202	63	90	23.5010
GUAUGUGUGCCGGGCCAACAACAACAU	chr1:22173749-22173984(-)$1	235	52	79	22.8551
AAGCAGUUGUCCCCCAAAUACUCUGCU	chr1:151847162-151847464(-)$1	302	144	171	21.1956
CUCCAGGACUAUGAGCUCUUCGUGGAG	chr1:26607453-26607662(+)$1	209	89	116	22.8011
GUAGUCAGACAUUAUCAUCCUGUCAUA	chr4:39077494-39077766(+)$1	272	101	128	23.5336
CCACCCUGAGCAACUCAUCACAGGCAA	chr12:49663513-49663737(+)$1	224	131	158	24.3963
UGCCUCAGCUCCUAAACUACCUGAAGG	chr6:170886647-170886854(-)$1	207	53	80	23.7563
UGCCGCGGACCGAGGACCACCCGUGCC	chr19:36604979-36605211(-)$1	232	102	129	24.4919
AGAAACUGAAUUCCGACCCCCAGUUCG	chr17:28618316-28618617(-)$1	301	124	151	24.4066
GCCUCUGGAACUAGGCAUGCCCAGAGU	chr22:30985139-30985356(-)$1	217	16	43	22.9656
GAUGGCUGCAACAUGAUUAUGGCCACC	chr11:61608002-61608242(+)$1	240	103	130	23.6523
GAACAUGGAUACACAGCCCUCAUGUUU	chr7:16666668-16666904(-)$1	236	200	227	24.2150
CCAGCUCUCCUUAAUACAUGAGCAAGA	chr1:179012850-179013071(+)$1	221	74	101	23.0881
GUAUGGAAAAUCCCAGCAAUUCUGUAC	chr21:40549350-40549575(-)$1	225	95	122	24.3291
CCACGGCCUGAAGCAGAUUGGCCUGGA	chr7:148427044-148427359(+)$1	315	196	223	23.4765
ccagacuaccuuuuuauacuaggucug	chr2:86438376-86438643(+)$1	267	89	116	23.1971
UGCCUAGAGCACCAUCACAGCUAGGAA	chr12:64844288-64844548(+)$1	260	123	150	24.3548
GUUGAGGAAAGCAGACAUUGACCUCAC	chr6:33243473-33243678(+)$1	205	129	156	22.6293
ACUUCUCUUUGUAGAUAGUGGAGGAGC	chr1:154247768-154248000(+)$1	232	86	113	24.1975
ACUUUCUUCUACUCUGUGCCUUGAGCU	chr10:120444885-120445144(-)$1	259	85	112	21.9511
AGGCAGGGGCACAUCACUCAUCCUGCU	chr15:75146260-75146561(-)$1	301	4	31	24.2318
AGAGGUCUUUCCAUUAUGUCUGGUUCU	chr1:157093427-157093688(-)$1	261	34	61	22.5735
ugcagugaaccaagaucacaccacugc	chr19:50410654-50410875(-)$1	221	2	29	23.5010
AUAUGCCUUCACCAGCUAUGGCAUUAG	chr18:34378362-34378587(-)$1	225	136	163	23.9874
CAGCUGCUUACGUCACAACCCGCGGAA	chr18:29671756-29672014(+)$1	258	50	77	22.7403
UUCGAAAGAAUAUGAUCAACUCCUGAA	chr7:107253741-107253978(+)$1	237	90	117	22.3649
GGACUGGCCUAGUGUUUACCCAGUUGC	chr12:27869191-27869441(+)$1	250	70	97	23.3837
CCCAUCUAACUGACAAACUCAUGAUGG	chr2:106761547-106761807(-)$1	260	9	36	22.2124
CUCCAGGGGCACCAUUGAAAUCCUGGU	chr12:120636558-120636761(-)$1	203	80	107	23.8342

#DB
((((.(((............))).).)	chr3:53260741-53260962(-)$1	1	51	78	23.7869
(((.(((.............)))...)	chr19:49993680-49993888(+)$1	1	20	47	24.3958
((((((((...........))))...)	chr21:34799090-34799313(+)$1	1	107	134	22.7669
((((((((...........))))).))	chr1:46782175-46782382(+)$1	1	121	148	23.1357
((((((.(...........).))))))	chr4:99993263-99993492(-)$1	1	143	170	24.7264
(((((((.............)))))))	chr10:17756745-17756998(+)$1	1	51	78	24.6222
((((((((...........))))))))	chr2:17889817-17890114(-)$1	1	17	44	23.7087
..((((((...........))))))..	chr4:25930719-25931010(+)$1	1	53	80	23.9610
.(((.(((...........))).))))	chr19:9273758-9273994(+)$1	1	172	199	24.0213
)(((.(((...........)))...))	chrX:151909265-151909492(+)$1	1	89	116	23.9367
((..(((.............))).)))	chr21:34793869-34794093(+)$1	1	181	208	23.6575
(.(((((..............))))))	chr12:54745381-54745615(+)$1	1	11	38	23.1932
(((.((((............)))).))	chr19:55741292-55741558(-)$1	1	92	119	24.0193
(((((((.............)))))))	chr19:34891342-34891578(+)$1	1	161	188	24.6222
((((((((............)))))))	chr1:24745859-24746127(+)$1	1	8	35	24.2808
...((((..............))))..	chr12:56109812-56110039(+)$1	1	114	141	23.1826
((((((................)))))	chr19:49513182-49513423(+)$1	1	181	208	21.8115
....((((.............))))..	chr12:58220772-58220977(-)$1	1	20	47	21.9295
)(((((((...........)))))))(	chr19:13889102-13889346(+)$1	1	135	162	23.4949
.((((((.............)))))).	chr2:159490612-159490863(+)$1	1	137	164	23.9481
((((((((...........)))).)))	chr5:138704527-138704747(+)$1	1	87	114	23.3645
.((((((..............))))))	chr9:37588816-37589029(-)$1	1	127	154	22.7697
.((.((((...........))))..))	chr17:4851545-4851781(-)$1	1	156	183	22.4026
((..((((............))))..)	chr21:40550353-40550633(-)$1	1	88	115	23.8443
..((((((............)))))).	chr19:39979175-39979386(+)$1	1	66	93	22.9656
((((((((...........))))).))	chr1:46782147-46782375(+)$1	1	149	176	23.1357
(..((((.............))))..)	chr12:53431092-53431314(+)$1	1	89	116	24.0503
(.(((((..............))))).	chr17:74730370-74730576(-)$1	1	172	199	23.2548
..(((((............)))))(((	chr3:14153599-14153817(-)$1	1	175	202	21.6081
(((((((.............)))))))	chr17:48212202-48212480(-)$1	1	0	27	24.6222
((((((................)))))	chr8:117669430-117669654(-)$1	1	99	126	22.6211
((....((...........))....))	chr11:59569918-59570168(+)$1	1	85	112	21.4069
.(((((((...........))))))).	chr1:223962912-223963119(+)$1	1	78	105	22.3599
..((((((...........))))))..	chr14:102552277-102552483(-)$1	1	55	82	22.1742
((.(((((............))))).)	chr1:35321005-35321340(-)$1	1	305	332	23.8330
(((((((..............))))))	chr16:85840243-85840445(+)$1	1	63	90	23.5010
(.((((((............)).))))	chr1:22173749-22173984(-)$1	1	52	79	22.8551
.(((((................)))))	chr1:151847162-151847464(-)$1	1	144	171	21.1956
(((((.((...........)).)))))	chr1:26607453-26607662(+)$1	1	89	116	22.8011
((((.(((...........))).).))	chr4:39077494-39077766(+)$1	1	101	128	23.5336
((..((((............))))...	chr12:49663513-49663737(+)$1	1	131	158	24.3963
.(((((((............))).)))	chr6:170886647-170886854(-)$1	1	53	80	23.7563
((.(((((............))))).)	chr19:36604979-36605211(-)$1	1	102	129	24.4919
.(((.(((............)))))))	chr17:28618316-28618617(-)$1	1	124	151	24.4066
..((((((............)))))).	chr22:30985139-30985356(-)$1	1	16	43	22.9656
(.(((((.............)))))))	chr11:61608002-61608242(+)$1	1	103	130	23.6523
.(((((((...........))))))))	chr7:16666668-16666904(-)$1	1	200	227	24.2150
((.((((............))))..).	chr1:179012850-179013071(+)$1	1	74	101	23.0881
((((((((...........))))))))	chr21:40549350-40549575(-)$1	1	95	122	24.3291
(((.((((...........))))))).	chr7:148427044-148427359(+)$1	1	196	223	23.4765
(((((((..............))))))	chr2:86438376-86438643(+)$1	1	89	116	23.1971
(.(((((.............))))).)	chr12:64844288-64844548(+)$1	1	123	150	24.3548
...((((..............))))))	chr6:33243473-33243678(+)$1	1	129	156	22.6293
.(((((((...........))))))))	chr1:154247768-154248000(+)$1	1	86	113	24.1975
(..(((................)))..	chr10:120444885-120445144(-)$1	1	85	112	21.9511
((.(((((............)))))))	chr15:75146260-75146561(-)$1	1	4	31	24.2318
(((((.((.............)).)))	chr1:157093427-157093688(-)$1	1	34	61	22.5735
(((((((..............))))))	chr19:50410654-50410875(-)$1	1	2	29	23.5010
..(((((............)))))..)	chr18:34378362-34378587(-)$1	1	136	163	23.9874
...((((..............))))..	chr18:29671756-29672014(+)$1	1	50	77	22.7403
((((..((...........))..))))	chr7:107253741-107253978(+)$1	1	90	117	22.3649
.((((((............))))))))	chr12:27869191-27869441(+)$1	1	70	97	23.3837
.(((((................)))))	chr2:106761547-106761807(-)$1	1	9	36	22.2124
(.((((((............)))))).	chr12:120636558-120636761(-)$1	1	80	107	23.8342

#PSSM
f : 0.14	g : 0.10	d : 0.07	! : 0.07	c : 0.07	" : 0.07	[ : 0.07	e : 0.06	b : 0.06	: : 0.04	i : 0.03	$ : 0.03	= : 0.03	D : 0.01	F : 0.01	# : 0.01	H : 0.01	% : 0.01	a : 0.01	
g : 0.18	f : 0.17	c : 0.10	[ : 0.09	d : 0.07	" : 0.06	e : 0.06	! : 0.04	b : 0.04	i : 0.03	$ : 0.03	# : 0.01	: : 0.01	% : 0.01	a : 0.01	= : 0.01	
f : 0.20	g : 0.18	e : 0.15	c : 0.09	d : 0.07	! : 0.07	[ : 0.06	" : 0.04	i : 0.03	# : 0.03	b : 0.01	= : 0.01	
e : 0.21	g : 0.18	f : 0.18	d : 0.10	c : 0.07	[ : 0.06	! : 0.04	a : 0.03	i : 0.03	# : 0.03	= : 0.01	
d : 0.23	e : 0.21	g : 0.18	f : 0.15	[ : 0.07	c : 0.04	i : 0.03	# : 0.01	= : 0.01	! : 0.01	
d : 0.21	e : 0.20	g : 0.18	c : 0.14	f : 0.14	i : 0.03	[ : 0.03	# : 0.01	= : 0.01	! : 0.01	
d : 0.20	e : 0.17	g : 0.15	c : 0.12	f : 0.12	y : 0.07	b : 0.07	i : 0.03	[ : 0.01	= : 0.01	
v : 0.14	w : 0.14	d : 0.12	c : 0.09	e : 0.07	f : 0.07	g : 0.07	y : 0.07	b : 0.07	u : 0.06	a : 0.01	i : 0.01	= : 0.01	
t : 0.32	u : 0.28	v : 0.17	w : 0.14	y : 0.07	
t : 0.32	u : 0.28	v : 0.17	w : 0.14	y : 0.07	
t : 0.32	u : 0.28	v : 0.17	w : 0.14	y : 0.07	
t : 0.32	u : 0.28	v : 0.17	w : 0.14	y : 0.07	
t : 0.32	u : 0.28	v : 0.17	w : 0.14	y : 0.07	
t : 0.32	u : 0.28	v : 0.17	w : 0.14	y : 0.07	
t : 0.32	u : 0.28	v : 0.17	w : 0.14	y : 0.07	
t : 0.32	u : 0.28	v : 0.17	w : 0.14	y : 0.07	
t : 0.32	u : 0.28	v : 0.17	w : 0.14	y : 0.07	
t : 0.32	u : 0.28	v : 0.17	w : 0.14	y : 0.07	
t : 0.32	u : 0.28	v : 0.17	w : 0.14	y : 0.07	
u : 0.21	v : 0.17	w : 0.14	d : 0.07	y : 0.07	e : 0.06	g : 0.06	f : 0.04	c : 0.04	b : 0.04	a : 0.01	i : 0.01	= : 0.01	
d : 0.14	e : 0.14	w : 0.14	c : 0.12	g : 0.12	f : 0.10	y : 0.07	b : 0.06	v : 0.03	] : 0.01	i : 0.01	= : 0.01	
d : 0.20	e : 0.17	g : 0.17	c : 0.12	f : 0.12	y : 0.07	i : 0.03	b : 0.03	4 : 0.01	] : 0.01	= : 0.01	2 : 0.01	
e : 0.21	d : 0.20	g : 0.18	f : 0.14	c : 0.09	] : 0.04	i : 0.03	3 : 0.01	4 : 0.01	= : 0.01	b : 0.01	2 : 0.01	
e : 0.21	g : 0.18	f : 0.15	d : 0.14	] : 0.07	c : 0.06	3 : 0.04	i : 0.03	2 : 0.03	4 : 0.01	a : 0.01	= : 0.01	
g : 0.18	f : 0.18	e : 0.15	d : 0.12	2 : 0.07	3 : 0.06	] : 0.06	c : 0.06	i : 0.03	a : 0.01	4 : 0.01	= : 0.01	
g : 0.18	f : 0.15	d : 0.10	e : 0.09	2 : 0.09	3 : 0.07	c : 0.07	] : 0.06	b : 0.04	i : 0.03	a : 0.03	5 : 0.01	= : 0.01	
f : 0.14	d : 0.12	g : 0.12	e : 0.12	c : 0.10	] : 0.06	b : 0.06	3 : 0.04	5 : 0.04	2 : 0.04	i : 0.03	= : 0.03	: : 0.01	4 : 0.01	a : 0.01	

#score	1495.440452536707
#seq	64
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_UTR_m1_run2.txt

#BEAR
ddd[abb"""eeeee[cccnnnnnccc22eeeee333bb]	chr19:50321455-50321752(+)$1	297	200	240	13.8394
eeeeggggggg[gggggggrrrrrrrrrgggggggggggg	chr3:131221572-131221908(-)$1	336	137	177	11.9205
feeeee!!a[ccc"""cccnnnnncccccc]a22eeeee4	chr8:96166157-96166419(+)$1	262	195	235	15.1696
===========####eeeeeooooooeeeee=========	chr14:104387714-104387962(-)$1	248	6	46	15.4623
dddd!!ffffff"""cccooooooccc22ffffff333dd	chr9:140484656-140484954(-)$1	298	225	265	13.7222
"ggggggg"""ccc[ddddnnnnndddd]ccc333ggggg	chr12:113796297-113796579(+)$1	282	62	102	16.5740
d[===============cccmmmmccc22===========	chr11:70244543-70244823(+)$1	280	41	81	16.3220
c!!ggggggg[a!!bb[aooooooa]bb22a]ggggggg]	chr11:64901826-64902085(-)$1	259	38	78	15.6070
ddd!!ggggggg!!addddnnnnndddd4444a22ggggg	chr2:228189884-228190244(+)$1	360	82	122	16.9294
eee####ccc[dddd[abbnnnnnbb]a]dddd]ccc22e	chr12:131357037-131357274(+)$1	237	23	63	13.2798
b[bb[eeeee!!a[a[cccnnnnnccc]a]a22eeeeebb	chr1:8021643-8021870(+)$1	227	42	82	13.6831
""dddd"""ccc"""ddddmmmmdddd4444ccc22dddd	chr20:37101376-37101703(+)$1	327	14	54	12.6368
ggggggg"""bb"""ddddnnnnndddd4444bb333ggg	chr11:13690158-13690453(+)$1	295	71	111	16.9272
e[bb[a[ccc!!ddddcccnnnnnccc22dddd333ccc]	chr16:56459148-56459445(-)$1	297	130	170	15.0871
"""ggggggg[ccc[cccooooooccc22ccc]ggggggg	chr5:118788098-118788431(+)$1	333	138	178	16.1290
===========bb[ccccccmmmmccc]ccc]bb]=====	chr2:170681214-170681470(-)$1	256	10	50	14.3644
d[==========a[ddddoooooodddd333a]=======	chr9:86593186-86593394(-)$1	208	36	76	17.6697
##ddddggggggg[eeeeeooooooeeeeeggggggg]dd	chr16:2301413-2301628(-)$1	215	58	98	12.9365
cceeeee!!ccceeeeebboooooobb22eeeee]ccc22	chr16:88851257-88851523(-)$1	266	160	200	12.1995
ee[ccc[a!!ggggggg!!bblllbb333ggggggga]cc	chr21:40720837-40721105(-)$1	268	150	190	13.3963
Cggggggg"""gggggggooooooggggggggggggggee	chr3:48594012-48594349(-)$1	337	210	250	13.6301
bb[bb[agggggggcccbbnnnnnbb]ccc]ggggggg]a	chr2:113239766-113240027(+)$1	261	0	40	14.7761
fff"""ggggggg!!a[cccooooooccca]gggggggff	chr16:23521592-23521878(-)$1	286	90	130	14.3318
:ccc[eeeee####bb[bbnnnnnbb]bb4444eeeeecc	chr12:104850620-104850928(+)$1	308	204	244	12.7951
ggggg[ggggggg[eeeeellleeeee4444ggggggg]g	chr7:72992651-72993033(-)$1	382	188	228	13.9731
::==========!!ddddnnnnndddd4444=========	chr8:42952565-42952805(+)$1	240	68	108	15.6351
g"""accc[a[ffffff[annnnna]ffffff]a]ccc]a	chr19:54372845-54373195(+)$1	350	230	270	13.4055
"eeeee!!ccc####cccooooooccc4444ccc22eeee	chr13:51483827-51484131(+)$1	304	174	214	15.9217
"""ccc[a!!bb[a"""cccmmmmccc333a]bb22a]cc	chr14:78082791-78083048(-)$1	257	188	228	14.0217
dd!!a[ggggggg[eeeeennnnneeeee333ggggggga	chr1:220267511-220267826(+)$1	315	210	250	16.0110
cc"""ggggggg!!bb####ammmma4444bb22gggggg	chr11:62417009-62417290(-)$1	281	44	84	12.7684
ddd[dddd[ccc####cccnnnnnccc333ccc]dddd22	chr19:45394412-45394677(+)$1	265	95	135	15.4458
eeeee[ccc!!cccccc[annnnna]ccc]ccc22cccee	chr9:19380108-19380332(-)$1	224	180	220	14.8653
e!!ccc####ccc!!cccmmmmccc]ccc4444ccc]eee	chr12:56510334-56510543(+)$1	209	118	158	12.4203
eee!!a[bb[ccc!!ddddnnnnndddd22ccc]bb]a]e	chr20:31413629-31413860(+)$1	231	180	220	14.8989
cc[bb[==========[bbnnnnnbb]==========]bb	chr16:75467135-75467424(-)$1	289	80	120	16.7578
========!!ffffff[bboooooobbffffff333====	chr20:18488470-18488735(+)$1	265	19	59	14.3985
ccc:iiiiiiiii[ggggggglllgggggggiiiiiiiii	chr8:56986839-56987057(-)$1	218	149	189	12.8984
ggg[ccc$$$$$dddd[bbnnnnnbb]dddd333ccc]gg	chr5:68662246-68662523(-)$1	277	168	208	13.8779
fffff===========[bbmmmmbb]===========]ff	chr6:27775864-27776128(+)$1	264	216	256	13.3118
==========="""bb[ddddllldddd]bb]========	chr2:68274312-68274553(-)$1	241	88	128	15.0232
:ddddggggggga!!cccooooooccc22a]ggggggg]d	chr8:74876621-74876906(-)$1	285	240	280	15.0223
cc[bbiiiiiiiii[cccrrrrrrrrrccc]iiiiiiiii	chr17:40428276-40428523(-)$1	247	16	56	13.5376
hhhhhh[ccc[ccc!!cccnnnnnccc22cccccc]hhhh	chr4:75023744-75024041(+)$1	297	92	132	14.6740
iiiiii[cccdddd[ddddnnnnndddd]dddd]ccc]ii	chr3:176914813-176915113(-)$1	300	77	117	14.3495
:iiiiiiiii!!bb"""cccmmmmccc4444bb22iiiii	chr15:75074441-75074710(+)$1	269	92	132	13.9546
bb[ccc####bb[aeeeeennnnneeeee]a]bb4444cc	chr11:57297567-57297807(-)$1	240	51	91	13.2497
ccc::==========!!accclllccc]a22=========	chr11:64014143-64014394(-)$1	251	75	115	14.2536
cceeeeedddd"""ddddoooooodddd4444dddd]eee	chr4:667938-668174(-)$1	236	149	189	13.0529
eeeee===========[bbpppppppbb333=========	chr19:36605642-36605886(-)$1	244	122	162	12.7232
eeeee!!ccc####eeeeennnnneeeee22ccc]eeeee	chr12:6862030-6862276(-)$1	246	162	202	14.2232
eee!!bb[bbdddd"""bbnnnnnbb333dddd]bb333b	chr11:61560361-61560602(+)$1	241	33	73	13.0594
===[dddd$$$$$ccc[bbnnnnnbbccc333dddd]===	chr7:6414110-6414407(+)$1	297	42	82	14.8322
c==========="""a[bbnnnnnbba4444=========	chr1:203830636-203830868(+)$1	232	155	195	19.9320

#otherMatches

#Seq PSSM
UUUGUGAUUGAGGGUACGGCCAACCUGGGACCCUACUUCG	chr19:50321455-50321752(+)$1	297	200	240	13.8394
ACUUCCCCACGGCUACUGCGUCCACGUGGCGGUGGCGUGG	chr3:131221572-131221908(-)$1	336	137	177	11.9205
ACCUUUAACUAUACCUGGACGAGUUCUUAUUGGAGAAGGA	chr8:96166157-96166419(+)$1	262	195	235	15.1696
GGAGGCGCCGCUGGGGAGGCACUCUGGCCUUGCGGCGUCU	chr14:104387714-104387962(-)$1	248	6	46	15.4623
GCGCAGGCCCGGCCAUGACCGACUUCAAAUUGGGUAUCGU	chr9:140484656-140484954(-)$1	298	225	265	13.7222
AGCGCAGUCACGUGACCCGGGCUGCGGGGCGCAGCAUUGU	chr12:113796297-113796579(+)$1	282	62	102	16.5740
CAGGGGGCGGGGUCGCGCGGGGACCCGGAUGCGGCCCCGC	chr11:70244543-70244823(+)$1	280	41	81	16.3220
gccgccggAAGUGAGGUGUCUGACCCCCGAAGUUCCGGUU	chr11:64901826-64902085(-)$1	259	38	78	15.6070
AGAAGGGGCCAGCCCGCGCCUUUCGCGCUUCUGCCCUGGC	chr2:228189884-228190244(+)$1	360	82	122	16.9294
CGCGGGAGCGGGGCCGCCAUGGGCUGCGGGGCCGCGCGAG	chr12:131357037-131357274(+)$1	237	23	63	13.2798
CGUGACGCAGCGUGAGGCCAAGGCGGCGUGAGUCUGCGCA	chr1:8021643-8021870(+)$1	227	42	82	13.6831
ACCGGUUCAGCCCCGUAGAAAGCUCUGAUUAGGCGCACCG	chr20:37101376-37101703(+)$1	327	14	54	12.6368
CUCUUCAGCAGCCGGUCGCGGGCGGUGGAAAAGCGAGUGA	chr11:13690158-13690453(+)$1	295	71	111	16.9272
CGCCGUUCGCGAGGCCGCCGCAGAGGCCCGGCCGCAGCGC	chr16:56459148-56459445(-)$1	297	130	170	15.0871
CUUGUUCGUGUGUGUGUCGUUGCAGGCCUUAUUCAUGGGC	chr5:118788098-118788431(+)$1	333	138	178	16.1290
CGCCGGGCCGCUGGGCGGCGAACGCGUGCGCGCGUGCGGC	chr2:170681214-170681470(-)$1	256	10	50	14.3644
GCACUGGGGUGUCAGUUGUUGGUCCGACCCAGAACGCUUC	chr9:86593186-86593394(-)$1	208	36	76	17.6697
AAGAUGGCGCUGGUGGCUUCUGUGCGAGUCCCGGCGCGCG	chr16:2301413-2301628(-)$1	215	58	98	12.9365
CACGUGCUCGGCGCGGUCCUGUACUGGCUGCUGCUGCCCU	chr16:88851257-88851523(-)$1	266	160	200	12.1995
GCAGCGGCAAGGCAGCCCAGUUUCGCGAAGGCUGUCGGCG	chr21:40720837-40721105(-)$1	268	150	190	13.3963
CGCUCUGCACGCUUGCCAGCGCGGUGGUGAGGCGGGGUCC	chr3:48594012-48594349(-)$1	337	210	250	13.6301
gcggcgccgccggcacccgagaggcgcgguagccggcgcg	chr2:113239766-113240027(+)$1	261	0	40	14.7761
GCUAcagcggcugaagaggcaguggcgcccgcggccgcag	chr16:23521592-23521878(-)$1	286	90	130	14.3318
AGCGCAGCGGCAGCGGCGGCGGCACCACCAUCACCGCUCG	chr12:104850620-104850928(+)$1	308	204	244	12.7951
UGUCGGUGUUGCUUGGGCUGCUGGCCCUGAUGGCGACGGC	chr7:72992651-72993033(-)$1	382	188	228	13.9731
UUUUUUUUUUCUCUGUGUGUGAAACACUUAAAGAaaaagg	chr8:42952565-42952805(+)$1	240	68	108	15.6351
CUCUGCUAAGACCGCUGGUGAGUAggcagcgggccuggac	chr19:54372845-54373195(+)$1	350	230	270	13.4055
CGCCUGGCGCUAAAUUUAAAAACGUAACACGAGCAGCAGG	chr13:51483827-51484131(+)$1	304	174	214	15.9217
GAACGGGGAAGUACGGAACGGGUACGUGAGGAGCAGCGCU	chr14:78082791-78083048(-)$1	257	188	228	14.0217
CGAAUAGUGGCAGAUACCGGGACACGGUGCUGCUGCCGCA	chr1:220267511-220267826(+)$1	315	210	250	16.0110
CCUCCGUCCACCUCCACCCUCUCAUGUCCCUGCUGGUGGA	chr11:62417009-62417290(-)$1	281	44	84	12.7684
GUUCGGUUGCGCGUGGCGCACGGGGUGGGAGCGGAGCCCA	chr19:45394412-45394677(+)$1	265	95	135	15.4458
GGAACGUGAAUCGAGUCCCAGAACGCGGCAUUGCCUCAGU	chr9:19380108-19380332(-)$1	224	180	220	14.8653
UUUUGGUUCCUGCGUUGGGAUUCCGUGUACAAUCCAUAGA	chr12:56510334-56510543(+)$1	209	118	158	12.4203
AGUCUCUGCAGUUGAAUCUGACAAAGAUCGAACAGUUGUG	chr20:31413629-31413860(+)$1	231	180	220	14.8989
CGCCGCCGGGGCUCUAUGGUCUCUCCCUAGAGCUUUGCCG	chr16:75467135-75467424(-)$1	289	80	120	16.7578
GGCCAGUGGACAGCGCCGUGGCAUGACGCGCUGGGGCGCU	chr20:18488470-18488735(+)$1	265	19	59	14.3985
CGCAGGGCUCGGGCGCCGGGGGGACCCCGGUUUCGAGUUC	chr8:56986839-56987057(-)$1	218	149	189	12.8984
UAAUGUGGGUGAUUUAGCUCGAGAAGGUAAGGGACACUUU	chr5:68662246-68662523(-)$1	277	168	208	13.8779
CAUCGCCUGCUCCGCAAAGGCAACUAUGCGGAGCGGGUCG	chr6:27775864-27776128(+)$1	264	216	256	13.3118
UUAAUUUUUUCCAGUCAGCCAUAAUGGCAGGUGAAGAAAU	chr2:68274312-68274553(-)$1	241	88	128	15.0232
ucugugaaccaucugaaauugauuuuuguguaugguuuaa	chr8:74876621-74876906(-)$1	285	240	280	15.0223
GAAGCGGGGCGCGCUCCGGGUUGCCAGCGGCGCGCGUCCC	chr17:40428276-40428523(-)$1	247	16	56	13.5376
AAGCCGGGGAUCCGCGGCCAUGACGGUGCCGGUCCGCGGC	chr4:75023744-75024041(+)$1	297	92	132	14.6740
GCCUCUCACCCCCCGGAGGGGUUAUUUUGGGGGUGGUUGG	chr3:176914813-176915113(-)$1	300	77	117	14.3495
UGCCCCACCCGCGCCUUGCCCGGGGGCUUCUGCCGGGGUG	chr15:75074441-75074710(+)$1	269	92	132	13.9546
AGGAGAGUGAACGGCGGCGGUGGGUGCUGAUGGUGAUGUC	chr11:57297567-57297807(-)$1	240	51	91	13.2497
GCCAAGCCCGGGGGCUCCGCAUGCUGCAGCUgcccccggg	chr11:64014143-64014394(-)$1	251	75	115	14.2536
GGUGCAGGUCUCUCCGCUCAUCAAGGUGAUCCAGGCUUUG	chr4:667938-668174(-)$1	236	149	189	13.0529
GUCGCCAUGGAGCCCGACGGGACUUACGAGCCGGGCUUCG	chr19:36605642-36605886(-)$1	244	122	162	12.7232
UCGGGCACUGGUGAGGCUCGGGCAGAGCUGGCAGCCCCGG	chr12:6862030-6862276(-)$1	246	162	202	14.2232
GGCCACCCGCCGCUAAGCUGAGAAGGGAGAGCGAGCUUAG	chr11:61560361-61560602(+)$1	241	33	73	13.0594
AUUUCCUGUUUCUCUGCAGUUUUCCUCAGCUUUGGGUGGU	chr7:6414110-6414407(+)$1	297	42	82	14.8322
CGUACCGUGGCCAGGGUCAGAAAGUGCAGAAGGUUAUGGU	chr1:203830636-203830868(+)$1	232	155	195	19.9320

#DB
(((.(((...(((((.(((.....)))..)))))...)).	chr19:50321455-50321752(+)$1	1	200	240	13.8394
))))(((((((.(((((((.........))))))))))))	chr3:131221572-131221908(-)$1	1	137	177	11.9205
((((((..(.(((...(((.....)))))).)..))))).	chr8:96166157-96166419(+)$1	1	195	235	15.1696
(((((((((((....(((((......))))))))))))))	chr14:104387714-104387962(-)$1	1	6	46	15.4623
((((..((((((...(((......)))..))))))...))	chr9:140484656-140484954(-)$1	1	225	265	13.7222
.(((((((...(((.((((.....)))).)))...)))))	chr12:113796297-113796579(+)$1	1	62	102	16.5740
(.((((((((((((((((((....)))..)))))))))))	chr11:70244543-70244823(+)$1	1	41	81	16.3220
(..(((((((.(..((.(......).))..).))))))).	chr11:64901826-64902085(-)$1	1	38	78	15.6070
(((..(((((((..(((((.....))))....)..)))))	chr2:228189884-228190244(+)$1	1	82	122	16.9294
(((....(((.((((.(((.....)).).)))).)))..)	chr12:131357037-131357274(+)$1	1	23	63	13.2798
(.((.(((((..(.(.(((.....))).).)..)))))))	chr1:8021643-8021870(+)$1	1	42	82	13.6831
..((((...(((...((((....))))....)))..))))	chr20:37101376-37101703(+)$1	1	14	54	12.6368
(((((((...((...((((.....))))....))...)))	chr11:13690158-13690453(+)$1	1	71	111	16.9272
(.((.(.(((..(((((((.....)))..))))...))).	chr16:56459148-56459445(-)$1	1	130	170	15.0871
...(((((((.(((.(((......)))..))).)))))))	chr5:118788098-118788431(+)$1	1	138	178	16.1290
(((((((((((((.((((((....))).))).)).)))))	chr2:170681214-170681470(-)$1	1	10	50	14.3644
(.(((((((((((.((((......))))...).)))))))	chr9:86593186-86593394(-)$1	1	36	76	17.6697
..(((((((((((.(((((......)))))))))))).))	chr16:2301413-2301628(-)$1	1	58	98	12.9365
(((((((..((((((((((......))..))))).)))..	chr16:88851257-88851523(-)$1	1	160	200	12.1995
((.(((.(..(((((((..((...))...)))))))).))	chr21:40720837-40721105(-)$1	1	150	190	13.3963
((((((((...(((((((......))))))))))))))((	chr3:48594012-48594349(-)$1	1	210	250	13.6301
((.((.(((((((((((((.....)).))).))))))).)	chr2:113239766-113240027(+)$1	1	0	40	14.7761
(((...(((((((..(.(((......)))).)))))))))	chr16:23521592-23521878(-)$1	1	90	130	14.3318
.(((.(((((....((.((.....)).))....)))))))	chr12:104850620-104850928(+)$1	1	204	244	12.7951
(((((.(((((((.(((((...)))))....))))))).)	chr7:72992651-72993033(-)$1	1	188	228	13.9731
..((((((((((..((((.....))))....)))))))))	chr8:42952565-42952805(+)$1	1	68	108	15.6351
(...((((.(.((((((.(.....).)))))).).))).)	chr19:54372845-54373195(+)$1	1	230	270	13.4055
.(((((..(((....(((......)))....)))..))))	chr13:51483827-51484131(+)$1	1	174	214	15.9217
...(((.(..((.(...(((....)))...).))..).))	chr14:78082791-78083048(-)$1	1	188	228	14.0217
((..(.(((((((.(((((.....)))))...))))))))	chr1:220267511-220267826(+)$1	1	210	250	16.0110
((...(((((((..((....(....)....))..))))))	chr11:62417009-62417290(-)$1	1	44	84	12.7684
(((.((((.(((....(((.....)))...))).))))..	chr19:45394412-45394677(+)$1	1	95	135	15.4458
(((((.(((..((((((.(.....).))).)))..)))))	chr9:19380108-19380332(-)$1	1	180	220	14.8653
(..(((....(((..(((....))).)))....))).)))	chr12:56510334-56510543(+)$1	1	118	158	12.4203
(((..(.((.(((..((((.....))))..))).)).).)	chr20:31413629-31413860(+)$1	1	180	220	14.8989
((.((.((((((((((.((.....)).)))))))))).))	chr16:75467135-75467424(-)$1	1	80	120	16.7578
((((((((..((((((.((......))))))))...))))	chr20:18488470-18488735(+)$1	1	19	59	14.3985
))).(((((((((.(((((((...))))))))))))))))	chr8:56986839-56987057(-)$1	1	149	189	12.8984
(((.(((.....((((.((.....)).))))...))).))	chr5:68662246-68662523(-)$1	1	168	208	13.8779
((((((((((((((((.((....)).))))))))))).))	chr6:27775864-27776128(+)$1	1	216	256	13.3118
(((((((((((...((.((((...)))).)).))))))))	chr2:68274312-68274553(-)$1	1	88	128	15.0232
.((((((((((((..(((......)))..).))))))).)	chr8:74876621-74876906(-)$1	1	240	280	15.0223
((.(((((((((((.(((.........))).)))))))))	chr17:40428276-40428523(-)$1	1	16	56	13.5376
((((((.(((.(((..(((.....)))..)))))).))))	chr4:75023744-75024041(+)$1	1	92	132	14.6740
((((((.(((((((.((((.....)))).)))).))).))	chr3:176914813-176915113(-)$1	1	77	117	14.3495
.(((((((((..((...(((....)))....))..)))))	chr15:75074441-75074710(+)$1	1	92	132	13.9546
((.(((....((.((((((.....))))).).))....))	chr11:57297567-57297807(-)$1	1	51	91	13.2497
)))..((((((((((..((((...))).)..)))))))))	chr11:64014143-64014394(-)$1	1	75	115	14.2536
(((((((((((...((((......))))....)))).)))	chr4:667938-668174(-)$1	1	149	189	13.0529
)))))(((((((((((.((.......))...)))))))))	chr19:36605642-36605886(-)$1	1	122	162	12.7232
(((((..(((....(((((.....)))))..))).)))))	chr12:6862030-6862276(-)$1	1	162	202	14.2232
(((..((.((((((...((.....))...)))).))...)	chr11:61560361-61560602(+)$1	1	33	73	13.0594
(((.((((.....(((.((.....)))))...)))).)))	chr7:6414110-6414407(+)$1	1	42	82	14.8322
((((((((((((...(.((.....)))....)))))))))	chr1:203830636-203830868(+)$1	1	155	195	19.9320

#PSSM
e : 0.18	c : 0.16	d : 0.12	= : 0.09	" : 0.09	g : 0.07	: : 0.07	f : 0.05	b : 0.05	# : 0.01	C : 0.01	h : 0.01	i : 0.01	
e : 0.18	c : 0.14	d : 0.11	= : 0.11	g : 0.09	[ : 0.07	" : 0.07	! : 0.03	b : 0.03	f : 0.03	i : 0.03	# : 0.01	: : 0.01	h : 0.01	
e : 0.20	= : 0.16	d : 0.12	g : 0.09	[ : 0.09	" : 0.07	! : 0.05	c : 0.05	b : 0.03	f : 0.03	i : 0.03	h : 0.01	
e : 0.14	= : 0.14	g : 0.11	b : 0.09	c : 0.09	[ : 0.07	d : 0.07	! : 0.07	" : 0.05	: : 0.03	i : 0.03	# : 0.01	f : 0.01	h : 0.01	
= : 0.14	g : 0.12	e : 0.12	d : 0.09	c : 0.09	! : 0.07	a : 0.05	[ : 0.05	b : 0.05	i : 0.05	" : 0.03	# : 0.01	f : 0.01	h : 0.01	: : 0.01	
= : 0.20	g : 0.16	e : 0.11	c : 0.11	[ : 0.09	d : 0.07	i : 0.07	b : 0.03	! : 0.03	a : 0.03	# : 0.01	" : 0.01	h : 0.01	
g : 0.24	= : 0.22	[ : 0.11	e : 0.07	! : 0.05	# : 0.05	c : 0.05	i : 0.05	b : 0.03	d : 0.03	f : 0.01	" : 0.01	a : 0.01	
g : 0.24	= : 0.22	c : 0.12	" : 0.05	! : 0.05	d : 0.05	i : 0.05	e : 0.03	a : 0.03	# : 0.03	f : 0.01	b : 0.01	$ : 0.01	[ : 0.01	
g : 0.20	= : 0.20	c : 0.12	" : 0.09	! : 0.07	i : 0.05	e : 0.03	[ : 0.03	# : 0.03	b : 0.03	$ : 0.03	a : 0.01	f : 0.01	d : 0.01	
g : 0.20	= : 0.20	c : 0.16	" : 0.07	! : 0.07	i : 0.05	[ : 0.03	e : 0.03	# : 0.03	$ : 0.03	f : 0.01	a : 0.01	d : 0.01	b : 0.01	
= : 0.20	g : 0.18	c : 0.12	[ : 0.09	! : 0.07	b : 0.05	d : 0.05	f : 0.03	" : 0.03	# : 0.03	i : 0.03	$ : 0.03	e : 0.01	
c : 0.18	g : 0.18	= : 0.14	# : 0.07	b : 0.07	f : 0.05	d : 0.05	! : 0.05	i : 0.03	$ : 0.03	" : 0.03	e : 0.01	[ : 0.01	a : 0.01	
g : 0.14	c : 0.12	" : 0.11	# : 0.09	= : 0.09	d : 0.09	! : 0.07	a : 0.05	e : 0.03	b : 0.03	f : 0.03	[ : 0.03	i : 0.03	$ : 0.01	
! : 0.14	" : 0.12	[ : 0.12	# : 0.09	c : 0.09	= : 0.09	d : 0.09	g : 0.07	e : 0.03	f : 0.03	a : 0.03	i : 0.01	b : 0.01	
" : 0.14	e : 0.12	d : 0.11	= : 0.09	! : 0.09	g : 0.07	[ : 0.07	b : 0.07	c : 0.07	# : 0.05	a : 0.03	f : 0.03	
d : 0.20	c : 0.18	e : 0.12	g : 0.07	" : 0.07	= : 0.07	b : 0.07	[ : 0.05	a : 0.03	f : 0.03	! : 0.03	# : 0.01	
c : 0.27	[ : 0.20	d : 0.16	e : 0.12	g : 0.07	" : 0.05	= : 0.01	a : 0.01	f : 0.01	# : 0.01	! : 0.01	
c : 0.31	b : 0.22	d : 0.18	e : 0.11	g : 0.05	a : 0.03	[ : 0.03	! : 0.01	# : 0.01	
c : 0.22	b : 0.22	o : 0.14	d : 0.12	e : 0.11	g : 0.03	a : 0.03	! : 0.01	n : 0.01	# : 0.01	m : 0.01	r : 0.01	
n : 0.46	o : 0.20	c : 0.11	m : 0.05	r : 0.03	e : 0.01	b : 0.01	l : 0.01	# : 0.01	g : 0.01	d : 0.01	p : 0.01	
n : 0.46	o : 0.24	m : 0.12	r : 0.03	b : 0.01	l : 0.01	a : 0.01	g : 0.01	d : 0.01	c : 0.01	p : 0.01	
n : 0.46	o : 0.24	m : 0.14	l : 0.09	r : 0.03	p : 0.01	
n : 0.46	o : 0.24	m : 0.12	l : 0.07	r : 0.03	e : 0.01	c : 0.01	p : 0.01	
n : 0.44	o : 0.24	m : 0.09	l : 0.07	r : 0.03	d : 0.03	e : 0.01	c : 0.01	b : 0.01	p : 0.01	
c : 0.29	d : 0.18	b : 0.18	o : 0.09	e : 0.07	a : 0.05	r : 0.03	g : 0.03	m : 0.01	p : 0.01	
c : 0.27	b : 0.20	d : 0.18	] : 0.09	e : 0.09	r : 0.03	o : 0.03	g : 0.03	a : 0.01	p : 0.01	
c : 0.35	d : 0.18	e : 0.11	] : 0.09	b : 0.07	r : 0.03	3 : 0.03	g : 0.03	f : 0.01	4 : 0.01	= : 0.01	a : 0.01	
d : 0.16	2 : 0.14	c : 0.12	4 : 0.12	e : 0.09	3 : 0.07	b : 0.05	] : 0.05	g : 0.03	f : 0.03	= : 0.03	r : 0.01	a : 0.01	
2 : 0.18	4 : 0.18	c : 0.14	3 : 0.11	e : 0.09	] : 0.07	g : 0.05	a : 0.03	f : 0.03	= : 0.03	b : 0.01	d : 0.01	
4 : 0.22	c : 0.12	3 : 0.11	d : 0.09	e : 0.07	g : 0.07	2 : 0.07	f : 0.05	= : 0.05	] : 0.05	a : 0.03	b : 0.01	
4 : 0.20	c : 0.12	g : 0.09	] : 0.09	d : 0.09	a : 0.07	3 : 0.07	e : 0.05	f : 0.05	= : 0.05	b : 0.03	2 : 0.03	
c : 0.16	g : 0.14	= : 0.14	] : 0.09	4 : 0.09	d : 0.07	f : 0.05	3 : 0.05	e : 0.03	a : 0.03	b : 0.03	i : 0.03	2 : 0.01	
g : 0.18	= : 0.16	c : 0.12	d : 0.11	b : 0.09	2 : 0.05	] : 0.05	e : 0.03	f : 0.03	3 : 0.03	4 : 0.03	i : 0.03	a : 0.01	
g : 0.20	= : 0.18	2 : 0.09	] : 0.09	c : 0.09	e : 0.07	3 : 0.07	b : 0.07	i : 0.03	d : 0.03	f : 0.01	a : 0.01	
g : 0.22	= : 0.18	2 : 0.11	3 : 0.09	c : 0.09	] : 0.07	e : 0.05	d : 0.05	b : 0.03	i : 0.03	f : 0.01	4 : 0.01	
g : 0.25	= : 0.20	c : 0.12	3 : 0.09	e : 0.07	2 : 0.05	d : 0.05	i : 0.05	b : 0.03	] : 0.01	4 : 0.01	
g : 0.24	= : 0.22	c : 0.12	e : 0.09	3 : 0.07	] : 0.07	i : 0.05	d : 0.03	a : 0.03	h : 0.01	4 : 0.01	
g : 0.24	= : 0.20	e : 0.12	] : 0.12	c : 0.07	i : 0.05	3 : 0.03	d : 0.03	b : 0.01	2 : 0.01	a : 0.01	h : 0.01	4 : 0.01	
= : 0.20	g : 0.16	e : 0.12	c : 0.09	] : 0.09	i : 0.07	b : 0.05	d : 0.05	2 : 0.05	f : 0.03	h : 0.01	3 : 0.01	
= : 0.20	g : 0.14	e : 0.14	d : 0.07	c : 0.07	i : 0.07	] : 0.05	b : 0.05	a : 0.05	2 : 0.03	f : 0.03	4 : 0.01	h : 0.01	

#score	781.8901987736596
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_CDS_m3_run1.txt

#BEAR
[eeeeeqqqqqqqqeeeee22	chr1:155281868-155282173(+)$1	305	268	289	14.2209
ggg[bbqqqqqqqqbb]gggg	chr1:220142321-220142566(-)$1	245	202	223	14.4467
bb[cccqqqqqqqqccc]bbe	chr5:139819544-139819830(+)$1	286	141	162	14.8319
!!ddddqqqqqqqqddddbb]	chr6:47544152-47544401(+)$1	249	124	145	14.3525
dddcccqqqqqqqqccc22dd	chrX:23801770-23802047(+)$1	277	226	247	14.6900
####bbqqqqqqqqbb333dd	chr9:138773525-138773793(-)$1	268	120	141	14.1579
###cccqqqqqqqqccc4444	chr2:15735556-15735821(+)$1	265	101	122	15.5529
ggggggqqqqqqqqggggggg	chr2:152273082-152273335(+)$1	253	220	241	15.1476
!!ddddqqqqqqqqdddd22c	chr9:130549765-130550022(+)$1	257	69	90	14.4989
hhhhhhqqqqqqqqhhhhhhh	chr2:38536378-38536673(-)$1	295	107	128	13.0182
bb[cccqqqqqqqqccc]bb]	chr9:131720163-131720463(+)$1	300	188	209	14.9682
eeee[aqqqqqqqqa]eeeee	chr3:183860462-183860780(+)$1	318	295	316	14.5286
e:cccaqqqqqqqqa]ccc:f	chr15:93472138-93472423(+)$1	285	144	165	12.8911
e!!cccqqqqqqqqccc22ee	chr18:209918-210183(+)$1	265	82	103	15.5842
[eeeeeqqqqqqqqeeeee33	chr9:95080812-95081120(-)$1	308	48	69	14.6017
bb[cccqqqqqqqqcccbb]d	chr18:33749904-33750169(+)$1	265	181	202	14.4191
ggggggqqqqqqqqggggggg	chr18:55278787-55279032(-)$1	245	165	186	15.1476
%%ddddqqqqqqqqdddd333	chr5:118433664-118433968(+)$1	304	49	70	13.5267
ggg[bbqqqqqqqqbb]gggg	chr17:43182840-43183113(+)$1	273	25	46	14.4467
======qqqqqqqq=======	chr1:247051694-247051960(-)$1	266	90	111	15.2234
ceeeeeqqqqqqqqeeeee>>	chr3:197023927-197024226(-)$1	299	173	194	13.8858
ggggggqqqqqqqqggggggg	chr1:193121394-193121632(+)$1	238	12	33	15.1476
g[ddddqqqqqqqqdddd]gg	chr21:45212463-45212756(+)$1	293	126	147	14.6887
ggggggqqqqqqqqggggggg	chr20:57563849-57564088(+)$1	239	61	82	15.1476
ggggggqqqqqqqqggggggg	chr14:73577420-73577739(+)$1	319	38	59	15.1476
eee[bbqqqqqqqqbbeeeee	chr2:48025632-48025884(+)$1	252	187	208	13.9564
!bb[bbqqqqqqqqbb22bb2	chr5:126865860-126866131(+)$1	271	162	183	13.0676
hhhhhhqqqqqqqqhhhhhhh	chr7:128626855-128627084(-)$1	229	53	74	13.0182
gg[cccqqqqqqqqccc22gg	chr16:18800328-18800571(-)$1	243	54	75	15.7573
[eeeeeqqqqqqqqeeeeedd	chr17:15976618-15976905(-)$1	287	208	229	14.0803
ffffffqqqqqqqqffffff:	chr6:160169265-160169540(+)$1	275	237	258	12.8472
[a[cccqqqqqqqqccca]bb	chr3:128200651-128200915(-)$1	264	10	31	15.2889
"""cccqqqqqqqqccc333a	chr6:43594027-43594270(-)$1	243	11	32	16.0048
ff[cccqqqqqqqqcccffff	chr3:37376433-37376688(+)$1	255	150	171	15.2335
!eeeeeqqqqqqqqeeeee44	chr3:100463544-100463802(+)$1	258	209	230	14.3836
ee[cccqqqqqqqqccc]eee	chr22:29688021-29688258(+)$1	237	113	134	15.5254
dddd[aqqqqqqqqa]dddd]	chr7:116550161-116550422(+)$1	261	59	80	14.0608
ff[cccqqqqqqqqcccffff	chr3:37376498-37376777(+)$1	279	85	106	15.2335
e[ddddqqqqqqqqdddd]ee	chr2:234754257-234754577(-)$1	320	175	196	14.4345
ddd[bbqqqqqqqqbb]dddd	chr7:56169424-56169677(-)$1	253	126	147	13.2388
ggggggqqqqqqqqggggggg	chr11:85687594-85687840(-)$1	246	28	49	15.1476
ff[cccqqqqqqqqcccffff	chr3:141712236-141712536(-)$1	300	46	67	15.2335
"""cccqqqqqqqqccc333a	chr1:52212267-52212569(+)$1	302	57	78	16.0048
ffffffqqqqqqqqffffff2	chr1:100525329-100525576(+)$1	247	133	154	13.7294
e[ddddqqqqqqqqdddd22e	chr3:38289052-38289284(+)$1	232	156	177	14.3022
cc[cccqqqqqqqqccc22cc	chr9:100760711-100760940(+)$1	229	204	225	15.4272
"""cccqqqqqqqqccc]bb2	chr3:9516634-9516884(+)$1	250	137	158	15.3334
ff"""aqqqqqqqqa22ffff	chr3:38278336-38278582(+)$1	246	85	106	13.8316
c[ddddqqqqqqqqdddd]cc	chr4:128812140-128812399(+)$1	259	171	192	14.4620
eeee[aqqqqqqqqa]eeeee	chr6:4032111-4032352(+)$1	241	173	194	14.5286
ddddddqqqqqqqqdddd444	chr11:3023618-3023935(-)$1	317	190	211	14.0332
ggggggqqqqqqqqggggggg	chr2:70143098-70143393(+)$1	295	161	182	15.1476
eeee[aqqqqqqqqa]eeeee	chr7:99008684-99008972(+)$1	288	70	91	14.5286
b!!cccqqqqqqqqccc]bb]	chr20:34328678-34328946(-)$1	268	198	219	15.3299
ffffffqqqqqqqqffffff:	chr1:226253208-226253476(+)$1	268	102	123	12.8472

#otherMatches

#Seq PSSM
AUGCUGAUAGUCUCCAGCGGG	chr1:155281868-155282173(+)$1	305	268	289	14.2209
UGCAAUGGAAAGGAAUAGCAA	chr1:220142321-220142566(-)$1	245	202	223	14.4467
GAAUGGUUUUGUUUCCAGUCG	chr5:139819544-139819830(+)$1	286	141	162	14.8319
ACUGGGACCCAAAACUCAGAG	chr6:47544152-47544401(+)$1	249	124	145	14.3525
GAAGGUAACCCCUCGCCCUUU	chrX:23801770-23802047(+)$1	277	226	247	14.6900
UUGAGGGAUUAUAGCUGCUGC	chr9:138773525-138773793(-)$1	268	120	141	14.1579
GAGGAGGUGAUGUACUUAUGG	chr2:15735556-15735821(+)$1	265	101	122	15.5529
AUUUGGUUCGUUUUUUAGGUA	chr2:152273082-152273335(+)$1	253	220	241	15.1476
GCUUCUAAAACACGAGAAUGU	chr9:130549765-130550022(+)$1	257	69	90	14.4989
AAGUGGAUCUAAAGUCACUUG	chr2:38536378-38536673(-)$1	295	107	128	13.0182
UUCUAUUCUUUGAUGUAAAAU	chr9:131720163-131720463(+)$1	300	188	209	14.9682
GUUUGGUAUCGAGUCAAGACU	chr3:183860462-183860780(+)$1	318	295	316	14.5286
GAGCCCAAAAAGAAGAGGCCA	chr15:93472138-93472423(+)$1	285	144	165	12.8911
GUUAAGUAUGAACCCUUUUCU	chr18:209918-210183(+)$1	265	82	103	15.5842
UAAUCAUAGCCCACUGAUUUU	chr9:95080812-95081120(-)$1	308	48	69	14.6017
UGCUCCUCAGUCCUGGACGUG	chr18:33749904-33750169(+)$1	265	181	202	14.4191
UAAAUAUUUUCUCUUAUUUAU	chr18:55278787-55279032(-)$1	245	165	186	15.1476
AUUUUGAAAGAUUACAGAUAA	chr5:118433664-118433968(+)$1	304	49	70	13.5267
GCUCCCACAGCACAGGCGGUG	chr17:43182840-43183113(+)$1	273	25	46	14.4467
AUAUUAAUUAACAGUGAUAUU	chr1:247051694-247051960(-)$1	266	90	111	15.2234
AGAGUUUAUUCCGUAACUCUG	chr3:197023927-197024226(-)$1	299	173	194	13.8858
AUUGAACCAUCACAUUCAAUG	chr1:193121394-193121632(+)$1	238	12	33	15.1476
CUUUUCAGACCACGGAGGCGC	chr21:45212463-45212756(+)$1	293	126	147	14.6887
UCCACUCAAGUAAAAGUGGGG	chr20:57563849-57564088(+)$1	239	61	82	15.1476
UUUACAAGAGGUAAUGUAAAA	chr14:73577420-73577739(+)$1	319	38	59	15.1476
CUAAGACACAAGGAUCUAGGC	chr2:48025632-48025884(+)$1	252	187	208	13.9564
AUAAGACAAAACAUUCAGUAG	chr5:126865860-126866131(+)$1	271	162	183	13.0676
ACUAGAAGUUUUCCUUUAGUU	chr7:128626855-128627084(-)$1	229	53	74	13.0182
CUUCCGCAGUGUAAUGGUUGG	chr16:18800328-18800571(-)$1	243	54	75	15.7573
UAUAGUAAUUUUGCAUUGUUG	chr17:15976618-15976905(-)$1	287	208	229	14.0803
CUUUUUGAGCCAAAAAAAAGC	chr6:160169265-160169540(+)$1	275	237	258	12.8472
UGUGAGAUUUAGCCCUCCUUG	chr3:128200651-128200915(-)$1	264	10	31	15.2889
GAGUUUAAGUGGAAAGAGAAA	chr6:43594027-43594270(-)$1	243	11	32	16.0048
AGACUCAACUUGAGGAGCUGC	chr3:37376433-37376688(+)$1	255	150	171	15.2335
CAGUAUGGUAUUCAGUAUUCA	chr3:100463544-100463802(+)$1	258	209	230	14.3836
AUGAAGGACCAGAUCUUGAUC	chr22:29688021-29688258(+)$1	237	113	134	15.5254
UGAAACUUAAAAUUGAUUCAA	chr7:116550161-116550422(+)$1	261	59	80	14.0608
AGACUCAACUUGAGGAGCUGC	chr3:37376498-37376777(+)$1	279	85	106	15.2335
UACUGCUACAAGGUGCAGAGU	chr2:234754257-234754577(-)$1	320	175	196	14.4345
UGGCCUAAUGAAGAAGUUCAA	chr7:56169424-56169677(-)$1	253	126	147	13.2388
UAGUGGAACUACAGCUACUAA	chr11:85687594-85687840(-)$1	246	28	49	15.1476
AUUAAUGAAAUUAAAUUGUAU	chr3:141712236-141712536(-)$1	300	46	67	15.2335
AUGUACAUCGUAUAGUAAAGU	chr1:52212267-52212569(+)$1	302	57	78	16.0048
UAUUGGUGCUCUUUCUGAUGU	chr1:100525329-100525576(+)$1	247	133	154	13.7294
AGUACUAAGAUUAAGGUAAGU	chr3:38289052-38289284(+)$1	232	156	177	14.3022
UUAAGUGGAAAUAAACUGAAA	chr9:100760711-100760940(+)$1	229	204	225	15.4272
CCAGAGACAUUAAGCUCAGCA	chr3:9516634-9516884(+)$1	250	137	158	15.3334
GGAAGGGAAAGCAGCAAUUUC	chr3:38278336-38278582(+)$1	246	85	106	13.8316
UGUGAAAGAAGUUCUUCAGAU	chr4:128812140-128812399(+)$1	259	171	192	14.4620
UACUACAAAGAAACGAAGUAA	chr6:4032111-4032352(+)$1	241	173	194	14.5286
GGCUCUACUGGGCAGGAGUGC	chr11:3023618-3023935(-)$1	317	190	211	14.0332
ACAUGGUUAUGCCUCCAUGUU	chr2:70143098-70143393(+)$1	295	161	182	15.1476
GGCUGGGAGUUGAUUGAGCCA	chr7:99008684-99008972(+)$1	288	70	91	14.5286
AAGGUGAGAAAAAACAUGUCG	chr20:34328678-34328946(-)$1	268	198	219	15.3299
UGCUAGUUAUGUUUUUGGUAA	chr1:226253208-226253476(+)$1	268	102	123	12.8472

#DB
.(((((........)))))..	chr1:155281868-155282173(+)$1	1	268	289	14.2209
(((.((........)).))))	chr1:220142321-220142566(-)$1	1	202	223	14.4467
((.(((........))).)))	chr5:139819544-139819830(+)$1	1	141	162	14.8319
..((((........)))))).	chr6:47544152-47544401(+)$1	1	124	145	14.3525
((((((........)))..))	chrX:23801770-23802047(+)$1	1	226	247	14.6900
....((........))...))	chr9:138773525-138773793(-)$1	1	120	141	14.1579
...(((........)))....	chr2:15735556-15735821(+)$1	1	101	122	15.5529
((((((........)))))))	chr2:152273082-152273335(+)$1	1	220	241	15.1476
..((((........))))..)	chr9:130549765-130550022(+)$1	1	69	90	14.4989
((((((........)))))))	chr2:38536378-38536673(-)$1	1	107	128	13.0182
((.(((........))).)).	chr9:131720163-131720463(+)$1	1	188	209	14.9682
((((.(........).)))))	chr3:183860462-183860780(+)$1	1	295	316	14.5286
).((((........).))).(	chr15:93472138-93472423(+)$1	1	144	165	12.8911
(..(((........)))..))	chr18:209918-210183(+)$1	1	82	103	15.5842
.(((((........)))))..	chr9:95080812-95081120(-)$1	1	48	69	14.6017
((.(((........))))).)	chr18:33749904-33750169(+)$1	1	181	202	14.4191
((((((........)))))))	chr18:55278787-55279032(-)$1	1	165	186	15.1476
..((((........))))...	chr5:118433664-118433968(+)$1	1	49	70	13.5267
(((.((........)).))))	chr17:43182840-43183113(+)$1	1	25	46	14.4467
((((((........)))))))	chr1:247051694-247051960(-)$1	1	90	111	15.2234
((((((........)))))..	chr3:197023927-197024226(-)$1	1	173	194	13.8858
((((((........)))))))	chr1:193121394-193121632(+)$1	1	12	33	15.1476
(.((((........)))).))	chr21:45212463-45212756(+)$1	1	126	147	14.6887
((((((........)))))))	chr20:57563849-57564088(+)$1	1	61	82	15.1476
((((((........)))))))	chr14:73577420-73577739(+)$1	1	38	59	15.1476
(((.((........)))))))	chr2:48025632-48025884(+)$1	1	187	208	13.9564
.((.((........))..)).	chr5:126865860-126866131(+)$1	1	162	183	13.0676
((((((........)))))))	chr7:128626855-128627084(-)$1	1	53	74	13.0182
((.(((........)))..))	chr16:18800328-18800571(-)$1	1	54	75	15.7573
.(((((........)))))))	chr17:15976618-15976905(-)$1	1	208	229	14.0803
((((((........)))))).	chr6:160169265-160169540(+)$1	1	237	258	12.8472
.(.(((........)))).))	chr3:128200651-128200915(-)$1	1	10	31	15.2889
...(((........)))...)	chr6:43594027-43594270(-)$1	1	11	32	16.0048
((.(((........)))))))	chr3:37376433-37376688(+)$1	1	150	171	15.2335
.(((((........)))))..	chr3:100463544-100463802(+)$1	1	209	230	14.3836
((.(((........))).)))	chr22:29688021-29688258(+)$1	1	113	134	15.5254
((((.(........).)))).	chr7:116550161-116550422(+)$1	1	59	80	14.0608
((.(((........)))))))	chr3:37376498-37376777(+)$1	1	85	106	15.2335
(.((((........)))).))	chr2:234754257-234754577(-)$1	1	175	196	14.4345
(((.((........)).))))	chr7:56169424-56169677(-)$1	1	126	147	13.2388
((((((........)))))))	chr11:85687594-85687840(-)$1	1	28	49	15.1476
((.(((........)))))))	chr3:141712236-141712536(-)$1	1	46	67	15.2335
...(((........)))...)	chr1:52212267-52212569(+)$1	1	57	78	16.0048
((((((........)))))).	chr1:100525329-100525576(+)$1	1	133	154	13.7294
(.((((........))))..)	chr3:38289052-38289284(+)$1	1	156	177	14.3022
((.(((........)))..))	chr9:100760711-100760940(+)$1	1	204	225	15.4272
...(((........))).)).	chr3:9516634-9516884(+)$1	1	137	158	15.3334
((...(........)..))))	chr3:38278336-38278582(+)$1	1	85	106	13.8316
(.((((........)))).))	chr4:128812140-128812399(+)$1	1	171	192	14.4620
((((.(........).)))))	chr6:4032111-4032352(+)$1	1	173	194	14.5286
((((((........))))...	chr11:3023618-3023935(-)$1	1	190	211	14.0332
((((((........)))))))	chr2:70143098-70143393(+)$1	1	161	182	15.1476
((((.(........).)))))	chr7:99008684-99008972(+)$1	1	70	91	14.5286
(..(((........))).)).	chr20:34328678-34328946(-)$1	1	198	219	15.3299
((((((........)))))).	chr1:226253208-226253476(+)$1	1	102	123	12.8472

#PSSM
g : 0.20	e : 0.16	f : 0.12	[ : 0.07	b : 0.07	! : 0.07	d : 0.07	c : 0.05	" : 0.05	# : 0.03	h : 0.03	% : 0.01	= : 0.01	
e : 0.18	g : 0.18	f : 0.12	b : 0.07	! : 0.07	d : 0.07	[ : 0.07	" : 0.05	# : 0.03	h : 0.03	: : 0.01	% : 0.01	= : 0.01	a : 0.01	c : 0.01	
d : 0.20	[ : 0.18	e : 0.16	g : 0.16	" : 0.07	f : 0.05	# : 0.03	h : 0.03	! : 0.03	c : 0.01	= : 0.01	b : 0.01	
c : 0.32	d : 0.16	e : 0.14	g : 0.12	[ : 0.09	f : 0.05	h : 0.03	# : 0.01	= : 0.01	" : 0.01	
c : 0.32	d : 0.14	g : 0.12	b : 0.10	e : 0.09	[ : 0.07	f : 0.05	h : 0.03	= : 0.01	" : 0.01	
c : 0.30	d : 0.14	g : 0.12	b : 0.10	a : 0.10	e : 0.09	f : 0.05	h : 0.03	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.30	d : 0.14	g : 0.12	b : 0.10	a : 0.10	e : 0.09	f : 0.05	h : 0.03	= : 0.01	
c : 0.30	d : 0.14	g : 0.12	b : 0.10	e : 0.09	] : 0.09	f : 0.05	h : 0.03	= : 0.01	2 : 0.01	
c : 0.32	e : 0.16	d : 0.16	g : 0.12	] : 0.05	f : 0.05	h : 0.03	2 : 0.03	3 : 0.01	= : 0.01	
d : 0.18	e : 0.16	g : 0.16	f : 0.12	] : 0.09	2 : 0.09	3 : 0.05	h : 0.03	4 : 0.01	c : 0.01	b : 0.01	= : 0.01	a : 0.01	
e : 0.18	g : 0.16	b : 0.12	f : 0.12	2 : 0.10	3 : 0.07	] : 0.07	4 : 0.03	h : 0.03	d : 0.03	c : 0.01	= : 0.01	
g : 0.20	b : 0.12	e : 0.12	f : 0.12	d : 0.09	3 : 0.07	2 : 0.05	4 : 0.05	h : 0.03	c : 0.03	: : 0.01	] : 0.01	= : 0.01	> : 0.01	
g : 0.20	e : 0.16	d : 0.09	f : 0.09	2 : 0.07	] : 0.07	4 : 0.05	c : 0.05	h : 0.03	3 : 0.03	: : 0.03	a : 0.03	= : 0.01	> : 0.01	b : 0.01	

#score	800.291847586233
#seq	55
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_CDS_m2_run1.txt

#BEAR
::CCCKKDDDD{EEEEELLLFFFFFF:	chr1:90493004-90493326(+)$1	322	29	56	21.7956
:CCC{DDDD{A{EEEEEMMMMIIIIII	chr20:34312412-34312680(-)$1	268	108	135	24.1315
::::EEEEELLLEEEEEKKHHHHHHHH	chr1:161088100-161088509(+)$1	409	0	27	20.3106

#otherMatches

#Seq PSSM
aagcagaggaagugggggaaguagagg	chr1:90493004-90493326(+)$1	322	29	56	21.7956
GAUGUUAGCUCAGUGCCUCUAGCAAUA	chr20:34312412-34312680(-)$1	268	108	135	24.1315
GGGCGGGGCGCGGCUUGGGGCCUGGGU	chr1:161088100-161088509(+)$1	409	0	27	20.3106

#DB
..(((..((((.(((((...((((((.	chr1:90493004-90493326(+)$1	1	29	56	21.7956
.(((.((((.(.(((((....((((((	chr20:34312412-34312680(-)$1	1	108	135	24.1315
....(((((...(((((..((((((((	chr1:161088100-161088509(+)$1	1	0	27	20.3106

#PSSM
: : 1.00	
: : 0.66	C : 0.33	
C : 0.66	: : 0.33	
C : 0.66	: : 0.33	
C : 0.33	{ : 0.33	E : 0.33	
K : 0.33	D : 0.33	E : 0.33	
K : 0.33	D : 0.33	E : 0.33	
D : 0.66	E : 0.33	
D : 0.66	E : 0.33	
D : 0.33	{ : 0.33	L : 0.33	
D : 0.33	A : 0.33	L : 0.33	
{ : 0.66	L : 0.33	
E : 1.00	
E : 1.00	
E : 1.00	
E : 1.00	
E : 1.00	
L : 0.33	M : 0.33	K : 0.33	
L : 0.33	M : 0.33	K : 0.33	
L : 0.33	M : 0.33	H : 0.33	
F : 0.33	M : 0.33	H : 0.33	
F : 0.33	I : 0.33	H : 0.33	
F : 0.33	I : 0.33	H : 0.33	
F : 0.33	I : 0.33	H : 0.33	
F : 0.33	I : 0.33	H : 0.33	
F : 0.33	I : 0.33	H : 0.33	
: : 0.33	I : 0.33	H : 0.33	

#score	66.23791950943337
#seq	3
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_transcript_m2_run2.txt

#BEAR
i:dddd[a[bboooooobb]a]ddddd	chr16:2818214-2818475(+)$1	261	106	133	12.2702
ggggggg"""ccclllccc333ggggg	chr19:41771158-41771420(+)$1	262	156	183	8.9357
[ccc"""ccc[aooooooa]ccc22cc	chr11:120895128-120895455(+)$1	327	245	272	11.8977
hhhhhheeeeeooooooeeeee]hhhh	chr3:126233969-126234242(-)$1	273	40	67	10.1583
[bb[dddd[bboooooobb]dddd]bb	chr3:48471164-48471376(-)$1	212	80	107	12.6679
ff!!dddd[bboooooobb]dddd444	chr11:776284-776559(-)$1	275	232	259	13.1009
hbb[dddd[bboooooobb]dddd]bb	chr11:14520927-14521165(-)$1	238	152	179	12.4683
eeeegggggggooooooggggggg::B	chr6:86352453-86352702(-)$1	249	218	245	10.2901
:ccc[ffffffooooooffffff]ccc	chr3:33481672-33481929(-)$1	257	202	229	11.8668
FFggggggg[bbnnnnnbb]ggggggg	chr16:50632893-50633185(+)$1	292	110	137	8.2201
fff[eeeee[aooooooaeeeeeffff	chr12:76477654-76477934(-)$1	280	176	203	12.0197
##a[gggggggooooooggggggg]a3	chr19:2337724-2337965(+)$1	241	178	205	13.6382
b[gggggggbboooooobb]ggggggg	chr10:69834419-69834713(-)$1	294	188	215	14.1706
f####ccc[bboooooobb]cccffff	chr7:102004570-102004837(+)$1	267	101	128	13.3845
ggggggg[cccooooooccc]gggggg	chr19:4329365-4329676(-)$1	311	27	54	13.6120
dddccc[ddddooooooddddcccFFF	chr20:39792341-39792568(+)$1	227	133	160	10.2683
ddddccc!!bboooooobb22ccc333	chr21:38740044-38740313(+)$1	269	22	49	13.1015
bb!!gggggggooooooggggggg22b	chr19:2425982-2426265(-)$1	283	219	246	12.7558
ccc==========lll==========:	chr19:50190203-50190445(+)$1	242	187	214	9.1947
d!!ccc"""bboooooobb4444ccc2	chr11:65736104-65736404(+)$1	300	143	170	13.4956
bb[bb[eeeeeooooooeeeee]bb]b	chr1:2323465-2323837(+)$1	372	28	55	10.7037
Fccc[ffffffooooooffffff]ccc	chr7:100865599-100865860(+)$1	261	13	40	12.2389
"abb[ccc[bboooooobb]ccc]bb]	chr19:56203486-56203774(+)$1	288	76	103	13.1550
fff!!ffffffooooooffffff22ff	chr13:113705436-113705775(+)$1	339	141	168	11.8424
b[ggggggg[aooooooa]ggggggg2	chr7:2675423-2675647(+)$1	224	35	62	13.5855
!dddd!!ddddoooooodddd]dddd5	chr9:137224298-137224642(+)$1	344	92	119	10.5156
bdddd[bb[bboooooobbbb]dddd2	chr3:135915042-135915301(-)$1	259	225	252	11.5581
==eeeee[cccooooooccceeeeeEE	chr19:39331506-39331854(-)$1	348	213	240	11.0218
b[ddddeeeeeooooooeeeee]dddd	chr19:18653606-18653843(-)$1	237	166	193	11.3042
hhhhffffff[aooooooa]ffffff5	chr7:137531533-137531843(-)$1	310	181	208	10.8535
''eeeee[cccooooooccceeeee]g	chr19:8455729-8456042(+)$1	313	264	291	11.5498
b!!bb"""cccoooooocccbb22bb]	chr9:139698129-139698346(+)$1	217	11	38	11.5252
eeeeffffff[aooooooa]ffffff7	chr16:87416476-87416711(-)$1	235	74	101	11.3022
===========oooooo==========	chr12:110719301-110719573(+)$1	272	27	54	13.8697
$$a[ffffff[aooooooa]ffffff]	chr7:157680467-157680716(-)$1	249	186	213	12.0479
:ffffff!!bboooooobbffffff:E	chr5:180651087-180651392(+)$1	305	251	278	10.6481
c[dddd[ddddoooooodddd]ddddc	chr2:239991509-239991782(-)$1	273	38	65	11.3867
c[bb[ffffffooooooffffff]bb]	chr12:120578100-120578400(-)$1	300	70	97	12.0913
e!!==========lll==========e	chr16:28875849-28876089(+)$1	240	39	66	9.7859
c:dddd!!cccooooooccc22ddddD	chr1:33283101-33283386(+)$1	285	85	112	10.6696
cc[ffffff[aooooooa]ffffff]c	chr17:45772041-45772306(+)$1	265	183	210	12.7794
f"""dddd[bboooooobb]ddddfff	chr2:135694350-135694642(+)$1	292	18	45	12.9831
ee[dddd"""aooooooa333ddddee	chr3:48471224-48471464(-)$1	240	11	38	12.4355
b[ccc####bboooooobb4444ccc]	chr11:63953760-63954067(+)$1	307	105	132	13.4123
cca[ccc[cccooooooccc]ccc]a:	chr19:14524040-14524307(-)$1	267	63	90	12.8721
hhhhhhh[cccooooooccchhhhhhh	chr3:195636048-195636317(-)$1	269	214	241	10.7142
bb[eeeeecccooooooccc22eeeee	chr13:113863709-113864041(+)$1	332	238	265	11.8966
::ffffff!!aooooooa22ffffff:	chr17:80008026-80008311(-)$1	285	2	29	10.3115

#otherMatches

#Seq PSSM
GAGUGGGGAGGGAGAAACCAUGUCACA	chr16:2818214-2818475(+)$1	261	106	133	12.2702
AGUGCUUUGGAGUUUGGCUAGUGAGCA	chr19:41771158-41771420(+)$1	262	156	183	8.9357
UGUUAGAAGAGGGAGACGUGUCUGGGA	chr11:120895128-120895455(+)$1	327	245	272	11.8977
GGGCAGAUUGCAAGCAGGUGGUCCUGC	chr3:126233969-126234242(-)$1	273	40	67	10.1583
GCUACCCGGCUCUGGACGGGCGGGAAG	chr3:48471164-48471376(-)$1	212	80	107	12.6679
GUGGACAUUUUACAGUGAAUAUGUAUU	chr11:776284-776559(-)$1	275	232	259	13.1009
GCUGCUUUGCUGGAGGAAGGGGAGGAG	chr11:14520927-14521165(-)$1	238	152	179	12.4683
GGGAGCUCCAUGACAUUGUGGAGUGAG	chr6:86352453-86352702(-)$1	249	218	245	10.2901
GUGGUCCUCGGAGCGGCCCGAGGUCCA	chr3:33481672-33481929(-)$1	257	202	229	11.8668
GGGUCGCCUGAGGCCUUCUGGGGUGAU	chr16:50632893-50633185(+)$1	292	110	137	8.2201
CGCGCGGGGAGGGGAAACCCCCGGCGG	chr12:76477654-76477934(-)$1	280	176	203	12.0197
GGUGACGGAGACCACACUCUCUGUGGG	chr19:2337724-2337965(+)$1	241	178	205	13.6382
CUGCCUGGGGAUGGGCUUCUCUCAGGU	chr10:69834419-69834713(-)$1	294	188	215	14.1706
GAUCUGGGCCCCGAGAAGGACCCCCGC	chr7:102004570-102004837(+)$1	267	101	128	13.3845
UCUCCGGGGAGGAGUUAUUUGUCGGAG	chr19:4329365-4329676(-)$1	311	27	54	13.6120
UGAGUGUGGCUCCUUCAGGCCCACCCA	chr20:39792341-39792568(+)$1	227	133	160	10.2683
ggccggccgccgggggAGGGAGCCUCA	chr21:38740044-38740313(+)$1	269	22	49	13.1015
GCCACCCGGGUAUAGACACCUGGGAAG	chr19:2425982-2426265(-)$1	283	219	246	12.7558
GGGGUUUUCUAGCCCAGCUGGGAGGCA	chr19:50190203-50190445(+)$1	242	187	214	9.1947
ugagcugagauggagagguagggggcc	chr11:65736104-65736404(+)$1	300	143	170	13.4956
gggccgggcggggagggccgucggggc	chr1:2323465-2323837(+)$1	372	28	55	10.7037
CUCCAGGCCGGGGCUCACUGGCUGGGA	chr7:100865599-100865860(+)$1	261	13	40	12.2389
GGGCGGGGGUCAGAUGAGAGCCCAGCA	chr19:56203486-56203774(+)$1	288	76	103	13.1550
GCCGAUGGGGUGGGGCGGCUCUGGGGG	chr13:113705436-113705775(+)$1	339	141	168	11.8424
gagaccuuaaugauaagacugagguca	chr7:2675423-2675647(+)$1	224	35	62	13.5855
GAGGUAGGGACAGCAAGGUCUGGCCUG	chr9:137224298-137224642(+)$1	344	92	119	10.5156
GCCUGAGGCGCCACACAGCCCGCGGGA	chr3:135915042-135915301(-)$1	259	225	252	11.5581
UUGGGGGUCAAACUUGCUUGCUUCCCU	chr19:39331506-39331854(-)$1	348	213	240	11.0218
GCGGCGGGCUGGUUUGAUGGCUGUGCC	chr19:18653606-18653843(-)$1	237	166	193	11.3042
gggcggggGAGUGAGCGGAGUUUCCCA	chr7:137531533-137531843(-)$1	310	181	208	10.8535
ACAGUGCUAAGCCAGUACUUgcacuuu	chr19:8455729-8456042(+)$1	313	264	291	11.5498
ugggcugagggauugaacccgcaaagg	chr9:139698129-139698346(+)$1	217	11	38	11.5252
GCCUGGGGGCCGCCUCCUCUGCCCCUG	chr16:87416476-87416711(-)$1	235	74	101	11.3022
CCCUCCCUUCUGGCGAGGGGAGGGAGG	chr12:110719301-110719573(+)$1	272	27	54	13.8697
AGCGGGUACUGGGUGAAGCGGGUACUG	chr7:157680467-157680716(-)$1	249	186	213	12.0479
AGGUCCAGCUGGGACAACAUGGACUAU	chr5:180651087-180651392(+)$1	305	251	278	10.6481
GACCCAGUCUCAGAAGAGAGGAUGGGC	chr2:239991509-239991782(-)$1	273	38	65	11.3867
UGCACCUCCUUCUGGGAAAGGGGAUGG	chr12:120578100-120578400(-)$1	300	70	97	12.0913
ACCGACUUACAGCCUGGCUGUAGGUUU	chr16:28875849-28876089(+)$1	240	39	66	9.7859
CCGGCUGACUCGGGGUAGGGGAGGUCG	chr1:33283101-33283386(+)$1	285	85	112	10.6696
UGGCACUUAGAUGGGCCUGUGGGUGGC	chr17:45772041-45772306(+)$1	265	183	210	12.7794
UGUAUUUGUUCUUAAAUGACCAGAGUU	chr2:135694350-135694642(+)$1	292	18	45	12.9831
GGUGCGCAGGGGAGAAACAAGGCGCCU	chr3:48471224-48471464(-)$1	240	11	38	12.4355
ggggcggcggcggggaggugagggccg	chr11:63953760-63954067(+)$1	307	105	132	13.4123
UCUGUCUGUGGGUGUGGCCAGAGGGGC	chr19:14524040-14524307(-)$1	267	63	90	12.8721
cccgccgUGGUGGACGGGCUCGGCGGG	chr3:195636048-195636317(-)$1	269	214	241	10.7142
GACGAGGCCCCGCGGAAGGGCAGCUUC	chr13:113863709-113864041(+)$1	332	238	265	11.8966
AGGCCACCGAGAGGGUCCAGGGUGGCA	chr17:80008026-80008311(-)$1	285	2	29	10.3115

#DB
).((((.(.((......)).).))))(	chr16:2818214-2818475(+)$1	1	106	133	12.2702
(((((((...(((...)))...)))))	chr19:41771158-41771420(+)$1	1	156	183	8.9357
.(((...(((.(......).)))..))	chr11:120895128-120895455(+)$1	1	245	272	11.8977
(((((((((((......))))).))))	chr3:126233969-126234242(-)$1	1	40	67	10.1583
.((.((((.((......)).)))).))	chr3:48471164-48471376(-)$1	1	80	107	12.6679
((..((((.((......)).))))...	chr11:776284-776559(-)$1	1	232	259	13.1009
)((.((((.((......)).)))).))	chr11:14520927-14521165(-)$1	1	152	179	12.4683
))))(((((((......)))))))..)	chr6:86352453-86352702(-)$1	1	218	245	10.2901
.(((.((((((......)))))).)))	chr3:33481672-33481929(-)$1	1	202	229	11.8668
(((((((((.((.....)).)))))))	chr16:50632893-50633185(+)$1	1	110	137	8.2201
(((.(((((.(......))))))))))	chr12:76477654-76477934(-)$1	1	176	203	12.0197
..(.(((((((......))))))).).	chr19:2337724-2337965(+)$1	1	178	205	13.6382
(.(((((((((......)).)))))))	chr10:69834419-69834713(-)$1	1	188	215	14.1706
(....(((.((......)).)))))))	chr7:102004570-102004837(+)$1	1	101	128	13.3845
(((((((.(((......))).))))))	chr19:4329365-4329676(-)$1	1	27	54	13.6120
)))(((.((((......))))))))))	chr20:39792341-39792568(+)$1	1	133	160	10.2683
(((((((..((......))..)))...	chr21:38740044-38740313(+)$1	1	22	49	13.1015
((..(((((((......)))))))..)	chr19:2425982-2426265(-)$1	1	219	246	12.7558
)))((((((((((...)))))))))).	chr19:50190203-50190445(+)$1	1	187	214	9.1947
(..(((...((......))....))).	chr11:65736104-65736404(+)$1	1	143	170	13.4956
((.((.(((((......))))).)).)	chr1:2323465-2323837(+)$1	1	28	55	10.7037
((((.((((((......)))))).)))	chr7:100865599-100865860(+)$1	1	13	40	12.2389
.(((.(((.((......)).))).)).	chr19:56203486-56203774(+)$1	1	76	103	13.1550
(((..((((((......))))))..))	chr13:113705436-113705775(+)$1	1	141	168	11.8424
(.(((((((.(......).))))))).	chr7:2675423-2675647(+)$1	1	35	62	13.5855
.((((..((((......)))).)))).	chr9:137224298-137224642(+)$1	1	92	119	10.5156
(((((.((.((......)))).)))).	chr3:135915042-135915301(-)$1	1	225	252	11.5581
))(((((.(((......))))))))))	chr19:39331506-39331854(-)$1	1	213	240	11.0218
(.(((((((((......))))).))))	chr19:18653606-18653843(-)$1	1	166	193	11.3042
((((((((((.(......).)))))).	chr7:137531533-137531843(-)$1	1	181	208	10.8535
..(((((.(((......)))))))).)	chr19:8455729-8456042(+)$1	1	264	291	11.5498
(..((...(((......)))))..)).	chr9:139698129-139698346(+)$1	1	11	38	11.5252
((((((((((.(......).)))))).	chr16:87416476-87416711(-)$1	1	74	101	11.3022
(((((((((((......))))))))))	chr12:110719301-110719573(+)$1	1	27	54	13.8697
..(.((((((.(......).)))))).	chr7:157680467-157680716(-)$1	1	186	213	12.0479
.((((((..((......)))))))).)	chr5:180651087-180651392(+)$1	1	251	278	10.6481
(.((((.((((......)))).)))))	chr2:239991509-239991782(-)$1	1	38	65	11.3867
(.((.((((((......)))))).)).	chr12:120578100-120578400(-)$1	1	70	97	12.0913
(..((((((((((...)))))))))))	chr16:28875849-28876089(+)$1	1	39	66	9.7859
).((((..(((......)))..)))))	chr1:33283101-33283386(+)$1	1	85	112	10.6696
((.((((((.(......).)))))).)	chr17:45772041-45772306(+)$1	1	183	210	12.7794
(...((((.((......)).)))))))	chr2:135694350-135694642(+)$1	1	18	45	12.9831
((.((((...(......)...))))))	chr3:48471224-48471464(-)$1	1	11	38	12.4355
(.(((....((......))....))).	chr11:63953760-63954067(+)$1	1	105	132	13.4123
))(.(((.(((......))).))).).	chr19:14524040-14524307(-)$1	1	63	90	12.8721
(((((((.(((......))))))))))	chr3:195636048-195636317(-)$1	1	214	241	10.7142
((.((((((((......)))..)))))	chr13:113863709-113864041(+)$1	1	238	265	11.8966
..((((((..(......)..)))))).	chr17:80008026-80008311(-)$1	1	2	29	10.3115

#PSSM
b : 0.18	c : 0.12	f : 0.10	h : 0.08	e : 0.08	: : 0.06	d : 0.06	g : 0.04	[ : 0.04	F : 0.04	= : 0.04	i : 0.02	# : 0.02	" : 0.02	! : 0.02	' : 0.02	$ : 0.02	
c : 0.12	[ : 0.12	b : 0.10	f : 0.08	d : 0.08	: : 0.06	h : 0.06	e : 0.06	! : 0.06	g : 0.04	# : 0.04	= : 0.04	F : 0.02	a : 0.02	' : 0.02	$ : 0.02	" : 0.02	
d : 0.16	g : 0.10	c : 0.10	! : 0.10	b : 0.08	e : 0.08	f : 0.08	[ : 0.08	h : 0.06	a : 0.06	# : 0.02	= : 0.02	" : 0.02	
d : 0.16	c : 0.12	[ : 0.12	g : 0.10	e : 0.10	b : 0.08	h : 0.06	! : 0.06	= : 0.06	f : 0.06	# : 0.02	" : 0.02	
d : 0.22	g : 0.16	f : 0.12	c : 0.10	[ : 0.08	e : 0.08	= : 0.06	h : 0.04	b : 0.04	" : 0.02	# : 0.02	! : 0.02	
f : 0.20	d : 0.18	g : 0.16	c : 0.12	e : 0.08	= : 0.06	" : 0.04	h : 0.04	[ : 0.04	! : 0.02	# : 0.02	
f : 0.20	g : 0.16	e : 0.14	d : 0.10	c : 0.08	[ : 0.06	" : 0.06	= : 0.06	! : 0.04	b : 0.02	# : 0.02	h : 0.02	
f : 0.18	d : 0.14	g : 0.12	e : 0.10	[ : 0.10	" : 0.08	c : 0.06	! : 0.06	= : 0.06	a : 0.02	b : 0.02	# : 0.02	
c : 0.18	[ : 0.16	f : 0.16	g : 0.12	e : 0.08	" : 0.06	d : 0.06	! : 0.06	= : 0.06	# : 0.02	
b : 0.27	c : 0.18	f : 0.14	[ : 0.08	e : 0.06	g : 0.06	d : 0.06	= : 0.06	" : 0.04	! : 0.02	
b : 0.29	c : 0.18	a : 0.10	[ : 0.08	f : 0.08	e : 0.06	g : 0.06	d : 0.06	= : 0.06	
o : 0.83	a : 0.08	= : 0.04	c : 0.02	b : 0.02	
o : 0.91	= : 0.04	c : 0.02	n : 0.02	
o : 0.91	l : 0.06	n : 0.02	
o : 0.91	l : 0.06	n : 0.02	
o : 0.91	l : 0.06	n : 0.02	
o : 0.91	= : 0.04	c : 0.02	n : 0.02	
b : 0.29	c : 0.18	a : 0.10	o : 0.08	f : 0.08	e : 0.06	g : 0.06	d : 0.06	= : 0.06	
b : 0.29	c : 0.18	a : 0.08	e : 0.08	f : 0.08	g : 0.06	d : 0.06	= : 0.06	] : 0.04	3 : 0.02	2 : 0.02	
] : 0.27	c : 0.16	f : 0.12	e : 0.08	g : 0.08	d : 0.06	= : 0.06	3 : 0.04	2 : 0.04	4 : 0.04	b : 0.02	
f : 0.20	d : 0.14	e : 0.12	g : 0.12	c : 0.06	2 : 0.06	= : 0.06	3 : 0.04	] : 0.04	4 : 0.04	b : 0.04	a : 0.02	h : 0.02	
f : 0.20	g : 0.14	c : 0.12	e : 0.12	d : 0.10	] : 0.08	= : 0.06	4 : 0.04	2 : 0.04	3 : 0.02	b : 0.02	h : 0.02	
d : 0.20	f : 0.20	g : 0.16	c : 0.12	e : 0.08	] : 0.06	= : 0.06	4 : 0.04	2 : 0.02	h : 0.02	
d : 0.22	g : 0.16	f : 0.16	c : 0.10	] : 0.08	2 : 0.06	= : 0.06	e : 0.06	h : 0.04	b : 0.02	
f : 0.18	d : 0.14	g : 0.10	] : 0.08	c : 0.08	b : 0.08	2 : 0.06	= : 0.06	e : 0.06	h : 0.04	4 : 0.02	: : 0.02	F : 0.02	3 : 0.02	
f : 0.16	d : 0.12	g : 0.10	c : 0.10	b : 0.10	= : 0.06	] : 0.06	h : 0.04	: : 0.04	a : 0.04	e : 0.04	4 : 0.02	F : 0.02	3 : 0.02	2 : 0.02	E : 0.02	
g : 0.10	c : 0.10	] : 0.10	b : 0.08	f : 0.08	: : 0.06	2 : 0.06	e : 0.06	d : 0.04	h : 0.04	3 : 0.04	5 : 0.04	E : 0.04	4 : 0.02	B : 0.02	F : 0.02	7 : 0.02	= : 0.02	D : 0.02	

#score	566.579149094988
#seq	48
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_transcript_m1_run1.txt

#BEAR
[a[============[a[a[a[a[a[a[============	chr16:87772929-87773216(-)$1	287	31	71	23.6883
f[bb[============oooooo============bbfff	chr22:49921348-49921604(-)$1	256	129	169	25.1316
iiii[============mmmm============]iiiiii	chr1:231162977-231163321(-)$1	344	93	133	25.5538
==========^^^^^^^^^^^^^^^^^^==========]e	chr3:28326127-28326403(+)$1	276	127	167	18.5805
[=========="""cccooooooccc4444==========	chr8:129053730-129054127(+)$1	397	226	266	24.9592
!ccc[============ppppppp============]ccc	chr4:106357214-106357497(-)$1	283	178	218	21.2994
eeeee!!iiiiiiiiiaooooooa]iiiiiiiiieeeeeg	chr8:64089492-64089788(+)$1	296	52	92	20.5995
:::==========="""ccclllccc333===========	chr10:7397215-7397510(-)$1	295	245	285	20.4676
=================mmmm=================]c	chr1:197565600-197565914(-)$1	314	87	127	26.6296
=========[gggggggooooooggggggg333=======	chr16:11570309-11570589(-)$1	280	72	112	23.5918
33=============22a]dddd]================	chr21:45394903-45395227(+)$1	324	129	169	22.1899
======"""============"""================	chr17:78607812-78608099(+)$1	287	66	106	25.1480
ffffff[==========oooooo==========]ffffff	chr17:78535484-78535762(+)$1	278	205	245	22.9139
ee[================mmmm================]	chr19:47579403-47579701(-)$1	298	95	135	26.2408
==[==============ammmma]==============]=	chr21:46554225-46554512(+)$1	287	77	117	26.6947
"================oooooo================6	chr18:60388567-60388841(+)$1	274	133	173	28.3591
=============####ffffff[bb[=============	chr4:863746-864033(-)$1	287	147	187	21.1024
##============[a[ccclllccc]a============	chr12:133112974-133113287(+)$1	313	57	97	24.0998
====================lll=================	chr1:987888-988117(+)$1	229	150	190	27.7987
fff::============nnnnn==================	chr1:143401098-143401366(-)$1	268	54	94	22.6909
================"""bb!!ccc[=============	chr21:46872790-46873121(+)$1	331	65	105	23.3561
ee!!===========[aqqqqqqqqa]===========22	chr11:497459-497684(-)$1	225	86	126	21.1861
=================oooooo=================	chr20:18613308-18613707(+)$1	399	122	162	29.2888
f[===========[cccooooooccc]===========]f	chr22:49918499-49918732(-)$1	233	137	177	25.7875
[================mmmm================]cc	chr8:41540434-41540739(-)$1	305	113	153	26.1670
===========[bbrrrrrrrrrbb]===========]cc	chr10:97902112-97902412(+)$1	300	148	188	21.9892
=================oooooo=================	chr12:133107876-133108152(+)$1	276	87	127	29.2888
=====[===========oooooo===========]=====	chr10:134378969-134379338(+)$1	369	118	158	28.7530
===============[aooooooa]===============	chr19:40738534-40738801(-)$1	267	139	179	28.3515
e::::============oooooo============ddddb	chr2:240006126-240006472(-)$1	346	287	327	20.4064
==================mmmm==================	chr5:178220983-178221278(-)$1	295	119	159	27.2841
ddd[==============nnnnn==============ddd	chr2:201843841-201844113(-)$1	272	110	150	24.0299
[a[================mmmm================a	chr20:62653257-62653536(+)$1	279	92	132	26.6300
fff####============mmmm============fffff	chr1:885763-886017(-)$1	254	54	94	22.5299
[ccc!!iiiiiiiii[==========!!==========##	chr1:987553-987813(+)$1	260	77	117	22.1087
ggggga[==========!!annnnna22==========]a	chr2:158122948-158123257(+)$1	309	205	245	21.4324
=======!!ddddddddoooooodddd]dddd========	chr9:116169424-116169717(-)$1	293	85	125	18.2000
[ccc!!============mmmm============22ccc]	chr11:68036916-68037230(-)$1	314	127	167	23.1092
=========!!bb[cccooooooccc]bb4444=======	chr16:85655712-85655954(+)$1	242	5	45	21.9841
:::==============oooooo==============::f	chr19:7907496-7907834(+)$1	338	243	283	22.0138
============ddddrrrrrrrrrdddd]==========	chr12:122483344-122483653(+)$1	309	29	69	20.7805
=========[ccc!!bboooooobb22ccc22========	chr9:37174318-37174619(+)$1	301	180	220	21.0577
gggg"""==========qqqqqqqq==========ggggg	chr19:41195232-41195485(-)$1	253	89	129	21.4527
[bb[===============mmmm===============]b	chr17:38612879-38613182(+)$1	303	79	119	25.5756
ddddd[=============mmmm=============]ddd	chr6:143591864-143592144(+)$1	280	62	102	22.7053
===============[aqqqqqqqqa]=============	chr5:90073807-90074107(+)$1	300	109	149	23.2876
g!!===============nnnnn===============gg	chr21:45395027-45395312(+)$1	285	142	182	26.1988
===============lll======================	chr8:676698-677000(-)$1	302	87	127	25.7238
================mmmm================::gg	chr6:167343796-167344093(-)$1	297	64	104	22.5453
cc===============oooooo===============44	chr22:48210482-48210789(+)$1	307	95	135	28.2215

#otherMatches

#Seq PSSM
augacgugcugguguguggauggaugaggugcuggugugu	chr16:87772929-87773216(-)$1	287	31	71	23.6883
CAGCUGCAugugugcacgugucugugcaugugugugcgug	chr22:49921348-49921604(-)$1	256	129	169	25.1316
uguaggcgugugugugcgugugcauauguaugugugugcg	chr1:231162977-231163321(-)$1	344	93	133	25.5538
UUGACCUUUACUUCCCUUACUUCCAUCUUGGAGGUUAAAA	chr3:28326127-28326403(+)$1	276	127	167	18.5805
uguguuuaguauguguguguuuguAUUGGUUGCUGAGCAC	chr8:129053730-129054127(+)$1	397	226	266	24.9592
uauugguauguagaaauacuauuaauuuuuauauauagau	chr4:106357214-106357497(-)$1	283	178	218	21.2994
CAGAUUUUAAUUGGCACGUUAAAGAUGCCAGUUAGUUUGU	chr8:64089492-64089788(+)$1	296	52	92	20.5995
uuuuaaauuaaaauguuugauauucacuaauuuuaauuug	chr10:7397215-7397510(-)$1	295	245	285	20.4676
uaugugugcauguguauuuguguauaugugugcauguguu	chr1:197565600-197565914(-)$1	314	87	127	26.6296
acgucugcgugugcacaaggggaugugcauggguguggau	chr16:11570309-11570589(-)$1	280	72	112	23.5918
gugugcuggugugugGUGGGUGCUGGUGUAUGGCAUGUGC	chr21:45394903-45395227(+)$1	324	129	169	22.1899
gcauaCUGUGUGUGUGCAUAUUGUGUGCGUGUGUGCAUAC	chr17:78607812-78608099(+)$1	287	66	106	25.1480
gugagucuguguguaugugugauuguguacaugugcuuau	chr17:78535484-78535762(+)$1	278	205	245	22.9139
ugagugugugugugugugugugugcgcgcgcgcgcacgcg	chr19:47579403-47579701(-)$1	298	95	135	26.2408
CGAUGGGUGUGUGUGCCCGACAGUGGUGUGUGCGCCCGAC	chr21:46554225-46554512(+)$1	287	77	117	26.6947
GUUCAGUUGCUUUAAAACAUGGCUUUUAAAGUAACUGAAA	chr18:60388567-60388841(+)$1	274	133	173	28.3591
gugugcacgaguggugugugcauucauguguacuguguau	chr4:863746-864033(-)$1	287	147	187	21.1024
gagugcauguguauaugacagugugugaaugcacauguac	chr12:133112974-133113287(+)$1	313	57	97	24.0998
gcauggguccauguguguauaguguguacacaugggucca	chr1:987888-988117(+)$1	229	150	190	27.7987
GACAuguguguaugcaauguauuuguguaugcaugugugc	chr1:143401098-143401366(-)$1	268	54	94	22.6909
GCAUGUAUGUACAUGUGUGACCUUGUGUAUGCAUGAGUAU	chr21:46872790-46873121(+)$1	331	65	105	23.3561
gugagcacaugggcaagaaugagcacguguccguguguga	chr11:497459-497684(-)$1	225	86	126	21.1861
auguauaugugugcauggguaugugugcauauguguaugu	chr20:18613308-18613707(+)$1	399	122	162	29.2888
UGCAugugugcacuuguguacgagcaugugugcauguggg	chr22:49918499-49918732(-)$1	233	137	177	25.7875
ugcaugugugcgugcaugugugugugugugcacguguuca	chr8:41540434-41540739(-)$1	305	113	153	26.1670
GUAGUUUUUUAUGUGAUGAGACAACUUAGAGAGCUACAUG	chr10:97902112-97902412(+)$1	300	148	188	21.9892
ugugcauguguguaugugugugugcgugcaugugugcaug	chr12:133107876-133108152(+)$1	276	87	127	29.2888
ugcauuugugcauguaugucacugugugugcaugugugua	chr10:134378969-134379338(+)$1	369	118	158	28.7530
ACGCAGGCACACGUGGGUGUGUGUGCAUGUGUGUUUGUGU	chr19:40738534-40738801(-)$1	267	139	179	28.3515
ugugugugugugugugugugugugcgcgcgcacgcgugug	chr2:240006126-240006472(-)$1	346	287	327	20.4064
gugugcgugcaugugugcgugagugcgugugugcgcacgu	chr5:178220983-178221278(-)$1	295	119	159	27.2841
guguguguguguguguaugguguguauauguAUAUAUCAC	chr2:201843841-201844113(-)$1	272	110	150	24.0299
ugugugugugugugugugugCAUGCACGUAUGCAUAUGCC	chr20:62653257-62653536(+)$1	279	92	132	26.6300
caucugugcguguguacaccuguguguaugcaugugugua	chr1:885763-886017(-)$1	254	54	94	22.5299
CCUgugcgcauaugcaugcaugucuguguccgugugcacu	chr1:987553-987813(+)$1	260	77	117	22.1087
ucauauguuuuacaguugagaagagugagacuguaaaaga	chr2:158122948-158123257(+)$1	309	205	245	21.4324
GACAGGUAGUGACGUGUAGUUUGACACUGUUAACUUGUUA	chr9:116169424-116169717(-)$1	293	85	125	18.2000
gugugagugcacaugugugguggcaugugugcaugugcag	chr11:68036916-68037230(-)$1	314	127	167	23.1092
ACAGGAUGAUUGUGGCCGGAAAAGGUGACCAGUUUGUCCU	chr16:85655712-85655954(+)$1	242	5	45	21.9841
aguguguccauguguaugugugaaugugcauggguaugug	chr19:7907496-7907834(+)$1	338	243	283	22.0138
CCUGGGUUUUCAUGGUAAGACGGGAGCCACUGGGGGCUUG	chr12:122483344-122483653(+)$1	309	29	69	20.7805
UAGUGUUUUCAUUAAGUAGAAAAGCAGAAUCUAAAACACU	chr9:37174318-37174619(+)$1	301	180	220	21.0577
uggcuguguaugugugugugugugugCACGCGUACGCUGC	chr19:41195232-41195485(-)$1	253	89	129	21.4527
UCAAAugcgcgugugcacgugugcgugugcgugcgugugu	chr17:38612879-38613182(+)$1	303	79	119	25.5756
AAUAugugugugugcacauuugugugugugcacaugggua	chr6:143591864-143592144(+)$1	280	62	102	22.7053
caugugugagcauauguguauguguggguguguuugugug	chr5:90073807-90074107(+)$1	300	109	149	23.2876
uuuggugugugcuggcauguagugugcuggcgugugcugg	chr21:45395027-45395312(+)$1	285	142	182	26.1988
GUGUACAUGCAUGUCUGGGAuguguguguacaugugugug	chr8:676698-677000(-)$1	302	87	127	25.7238
gcaugugugugcaugugugaaugugugcaugcaugugaac	chr6:167343796-167344093(-)$1	297	64	104	22.5453
augugugugcaugcaugacuguguaugugugcauacauga	chr22:48210482-48210789(+)$1	307	95	135	28.2215

#DB
.(.((((((((((((.(.(.(.(.(.(.((((((((((((	chr16:87772929-87773216(-)$1	1	31	71	23.6883
(.((.((((((((((((......)))))))))))))))))	chr22:49921348-49921604(-)$1	1	129	169	25.1316
((((.((((((((((((....)))))))))))).))))))	chr1:231162977-231163321(-)$1	1	93	133	25.5538
((((((((((..................)))))))))).)	chr3:28326127-28326403(+)$1	1	127	167	18.5805
.((((((((((...(((......)))....))))))))))	chr8:129053730-129054127(+)$1	1	226	266	24.9592
.(((.((((((((((((.......)))))))))))).)))	chr4:106357214-106357497(-)$1	1	178	218	21.2994
(((((..((((((((((......).))))))))))))))(	chr8:64089492-64089788(+)$1	1	52	92	20.5995
...(((((((((((...(((...)))...)))))))))))	chr10:7397215-7397510(-)$1	1	245	285	20.4676
(((((((((((((((((....))))))))))))))))).)	chr1:197565600-197565914(-)$1	1	87	127	26.6296
(((((((((.(((((((......)))))))...)))))))	chr16:11570309-11570589(-)$1	1	72	112	23.5918
..)))))))))))))..).)))).))))))))))))))))	chr21:45394903-45395227(+)$1	1	129	169	22.1899
((((((...((((((((((((...((((((((((((((((	chr17:78607812-78608099(+)$1	1	66	106	25.1480
((((((.((((((((((......)))))))))).))))))	chr17:78535484-78535762(+)$1	1	205	245	22.9139
((.((((((((((((((((....)))))))))))))))).	chr19:47579403-47579701(-)$1	1	95	135	26.2408
((.(((((((((((((((....).)))))))))))))).)	chr21:46554225-46554512(+)$1	1	77	117	26.6947
.((((((((((((((((......)))))))))))))))).	chr18:60388567-60388841(+)$1	1	133	173	28.3591
(((((((((((((....((((((.((.(((((((((((((	chr4:863746-864033(-)$1	1	147	187	21.1024
..((((((((((((.(.(((...))).)))))))))))))	chr12:133112974-133113287(+)$1	1	57	97	24.0998
((((((((((((((((((((...)))))))))))))))))	chr1:987888-988117(+)$1	1	150	190	27.7987
)))..((((((((((((.....))))))))))))((((((	chr1:143401098-143401366(-)$1	1	54	94	22.6909
((((((((((((((((...((..(((.(((((((((((((	chr21:46872790-46873121(+)$1	1	65	105	23.3561
((..(((((((((((.(........).)))))))))))..	chr11:497459-497684(-)$1	1	86	126	21.1861
(((((((((((((((((......)))))))))))))))))	chr20:18613308-18613707(+)$1	1	122	162	29.2888
(.(((((((((((.(((......))).))))))))))).)	chr22:49918499-49918732(-)$1	1	137	177	25.7875
.((((((((((((((((....)))))))))))))))).))	chr8:41540434-41540739(-)$1	1	113	153	26.1670
(((((((((((.((.........)).))))))))))).))	chr10:97902112-97902412(+)$1	1	148	188	21.9892
(((((((((((((((((......)))))))))))))))))	chr12:133107876-133108152(+)$1	1	87	127	29.2888
(((((.(((((((((((......))))))))))).)))))	chr10:134378969-134379338(+)$1	1	118	158	28.7530
(((((((((((((((.(......).)))))))))))))))	chr19:40738534-40738801(-)$1	1	139	179	28.3515
)....((((((((((((......))))))))))))(((((	chr2:240006126-240006472(-)$1	1	287	327	20.4064
((((((((((((((((((....))))))))))))))))))	chr5:178220983-178221278(-)$1	1	119	159	27.2841
(((.((((((((((((((.....)))))))))))))))))	chr2:201843841-201844113(-)$1	1	110	150	24.0299
.(.((((((((((((((((....)))))))))))))))))	chr20:62653257-62653536(+)$1	1	92	132	26.6300
(((....((((((((((((....)))))))))))))))))	chr1:885763-886017(-)$1	1	54	94	22.5299
.(((..(((((((((.((((((((((..((((((((((..	chr1:987553-987813(+)$1	1	77	117	22.1087
)))))(.((((((((((..(.....)..)))))))))).)	chr2:158122948-158123257(+)$1	1	205	245	21.4324
(((((((..((((((((......)))).))))))))))))	chr9:116169424-116169717(-)$1	1	85	125	18.2000
.(((..((((((((((((....))))))))))))..))).	chr11:68036916-68037230(-)$1	1	127	167	23.1092
(((((((((..((.(((......))).))....)))))))	chr16:85655712-85655954(+)$1	1	5	45	21.9841
...((((((((((((((......))))))))))))))..(	chr19:7907496-7907834(+)$1	1	243	283	22.0138
((((((((((((((((.........)))).))))))))))	chr12:122483344-122483653(+)$1	1	29	69	20.7805
(((((((((.(((..((......))..)))..))))))))	chr9:37174318-37174619(+)$1	1	180	220	21.0577
((((...((((((((((........)))))))))))))))	chr19:41195232-41195485(-)$1	1	89	129	21.4527
.((.(((((((((((((((....))))))))))))))).)	chr17:38612879-38613182(+)$1	1	79	119	25.5756
)((((.(((((((((((((....))))))))))))).)))	chr6:143591864-143592144(+)$1	1	62	102	22.7053
(((((((((((((((.(........).)))))))))))))	chr5:90073807-90074107(+)$1	1	109	149	23.2876
(..(((((((((((((((.....)))))))))))))))))	chr21:45395027-45395312(+)$1	1	142	182	26.1988
(((((((((((((((...)))))))))))))))(((((((	chr8:676698-677000(-)$1	1	87	127	25.7238
((((((((((((((((....))))))))))))))))..((	chr6:167343796-167344093(-)$1	1	64	104	22.5453
(((((((((((((((((......)))))))))))))))..	chr22:48210482-48210789(+)$1	1	95	135	28.2215

#PSSM
= : 0.42	[ : 0.14	f : 0.10	e : 0.08	g : 0.06	: : 0.04	d : 0.04	i : 0.02	! : 0.02	3 : 0.02	" : 0.02	# : 0.02	c : 0.02	
= : 0.48	c : 0.08	e : 0.06	: : 0.06	f : 0.06	a : 0.04	[ : 0.04	d : 0.04	g : 0.04	i : 0.02	3 : 0.02	# : 0.02	b : 0.02	! : 0.02	
= : 0.54	[ : 0.08	c : 0.06	: : 0.06	f : 0.06	b : 0.04	! : 0.04	d : 0.04	g : 0.04	i : 0.02	e : 0.02	
= : 0.68	c : 0.06	: : 0.04	[ : 0.04	g : 0.04	b : 0.02	i : 0.02	e : 0.02	f : 0.02	! : 0.02	# : 0.02	d : 0.02	
= : 0.74	[ : 0.06	: : 0.04	! : 0.04	e : 0.02	f : 0.02	# : 0.02	g : 0.02	" : 0.02	d : 0.02	
= : 0.82	! : 0.06	[ : 0.04	f : 0.02	# : 0.02	a : 0.02	" : 0.02	
= : 0.86	" : 0.04	[ : 0.04	! : 0.02	# : 0.02	i : 0.02	
= : 0.92	i : 0.04	" : 0.02	! : 0.02	
= : 0.92	i : 0.04	" : 0.02	! : 0.02	
= : 0.88	i : 0.04	[ : 0.04	d : 0.02	! : 0.02	
= : 0.86	i : 0.04	^ : 0.02	g : 0.02	d : 0.02	! : 0.02	c : 0.02	
= : 0.82	i : 0.04	^ : 0.02	" : 0.02	g : 0.02	[ : 0.02	d : 0.02	b : 0.02	c : 0.02	
= : 0.80	i : 0.04	b : 0.04	d : 0.04	^ : 0.02	" : 0.02	g : 0.02	c : 0.02	
= : 0.76	i : 0.04	[ : 0.04	d : 0.04	^ : 0.02	" : 0.02	g : 0.02	# : 0.02	b : 0.02	! : 0.02	
= : 0.72	c : 0.06	i : 0.04	d : 0.04	^ : 0.02	" : 0.02	g : 0.02	# : 0.02	[ : 0.02	r : 0.02	! : 0.02	
= : 0.60	[ : 0.10	c : 0.06	d : 0.04	^ : 0.02	i : 0.02	" : 0.02	g : 0.02	2 : 0.02	# : 0.02	a : 0.02	r : 0.02	b : 0.02	l : 0.02	
= : 0.58	a : 0.10	c : 0.06	" : 0.04	r : 0.04	^ : 0.02	g : 0.02	2 : 0.02	# : 0.02	[ : 0.02	d : 0.02	b : 0.02	l : 0.02	m : 0.02	
o : 0.34	= : 0.23	m : 0.08	q : 0.06	c : 0.04	a : 0.04	r : 0.04	[ : 0.02	^ : 0.02	p : 0.02	f : 0.02	n : 0.02	" : 0.02	! : 0.02	l : 0.02	
o : 0.34	= : 0.18	m : 0.14	n : 0.06	q : 0.06	c : 0.04	r : 0.04	a : 0.02	^ : 0.02	p : 0.02	] : 0.02	f : 0.02	" : 0.02	! : 0.02	
o : 0.34	m : 0.23	= : 0.08	n : 0.06	q : 0.06	c : 0.04	r : 0.04	[ : 0.02	^ : 0.02	p : 0.02	d : 0.02	f : 0.02	b : 0.02	a : 0.02	
o : 0.34	m : 0.21	= : 0.08	n : 0.08	l : 0.06	q : 0.06	r : 0.04	a : 0.02	^ : 0.02	p : 0.02	d : 0.02	f : 0.02	b : 0.02	
o : 0.34	m : 0.16	= : 0.12	n : 0.08	l : 0.06	q : 0.06	r : 0.04	[ : 0.02	^ : 0.02	p : 0.02	d : 0.02	" : 0.02	f : 0.02	! : 0.02	
o : 0.34	= : 0.18	m : 0.10	l : 0.06	q : 0.06	n : 0.06	a : 0.04	r : 0.04	^ : 0.02	p : 0.02	d : 0.02	" : 0.02	f : 0.02	! : 0.02	
= : 0.52	c : 0.12	q : 0.06	[ : 0.04	a : 0.04	] : 0.04	b : 0.04	^ : 0.02	p : 0.02	g : 0.02	" : 0.02	n : 0.02	d : 0.02	r : 0.02	
= : 0.60	c : 0.12	b : 0.06	q : 0.06	] : 0.04	a : 0.02	^ : 0.02	g : 0.02	n : 0.02	d : 0.02	r : 0.02	
= : 0.64	c : 0.12	a : 0.06	d : 0.04	[ : 0.02	^ : 0.02	i : 0.02	g : 0.02	b : 0.02	] : 0.02	2 : 0.02	
= : 0.64	] : 0.10	[ : 0.04	2 : 0.04	d : 0.04	a : 0.02	^ : 0.02	4 : 0.02	i : 0.02	3 : 0.02	g : 0.02	! : 0.02	
= : 0.74	[ : 0.02	^ : 0.02	4 : 0.02	i : 0.02	3 : 0.02	g : 0.02	a : 0.02	! : 0.02	2 : 0.02	] : 0.02	b : 0.02	d : 0.02	c : 0.02	
= : 0.84	d : 0.04	4 : 0.02	i : 0.02	3 : 0.02	g : 0.02	b : 0.02	c : 0.02	
= : 0.86	4 : 0.04	i : 0.02	g : 0.02	d : 0.02	] : 0.02	c : 0.02	
= : 0.90	i : 0.02	3 : 0.02	d : 0.02	4 : 0.02	2 : 0.02	
= : 0.90	i : 0.02	3 : 0.02	d : 0.02	4 : 0.02	2 : 0.02	
= : 0.94	i : 0.02	3 : 0.02	4 : 0.02	
= : 0.94	] : 0.04	i : 0.02	
= : 0.90	i : 0.02	e : 0.02	f : 0.02	] : 0.02	2 : 0.02	
= : 0.84	f : 0.04	b : 0.02	i : 0.02	e : 0.02	d : 0.02	2 : 0.02	g : 0.02	
= : 0.78	] : 0.04	f : 0.04	b : 0.02	i : 0.02	e : 0.02	d : 0.02	c : 0.02	g : 0.02	: : 0.02	
= : 0.70	f : 0.06	d : 0.06	c : 0.04	] : 0.04	: : 0.04	i : 0.02	e : 0.02	g : 0.02	
= : 0.50	] : 0.12	c : 0.08	f : 0.06	d : 0.06	g : 0.06	i : 0.02	e : 0.02	2 : 0.02	# : 0.02	: : 0.02	4 : 0.02	
= : 0.46	f : 0.10	c : 0.08	g : 0.08	] : 0.04	b : 0.04	d : 0.04	a : 0.04	i : 0.02	e : 0.02	6 : 0.02	2 : 0.02	# : 0.02	4 : 0.02	

#score	1199.1870805819692
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_UTR_m2_run2.txt

#BEAR
fff"""cccooooooccc]ffffff:	chr17:42429934-42430159(+)$1	225	188	214	9.0113
ffffff[cccnnnnnccc22ffffff	chr19:47285668-47285906(-)$1	238	39	65	12.1303
a!!bb!!cccnnnnncccbb22afff	chr1:92149186-92149431(-)$1	245	25	51	11.5110
dddd"""cccoooooocccddddddd	chr19:1924109-1924387(+)$1	278	87	113	10.2346
ggggg"""cccmmmmccc]ggggggg	chr17:76967711-76967938(-)$1	227	34	60	8.9498
[dddd[cccooooooccc]ddddbb:	chr1:156263834-156264118(-)$1	284	248	274	8.9487
dd!!bb[cccnnnnnccc]bbdddd:	chr17:79813343-79813562(-)$1	219	182	208	11.9790
cccdddd[bbnnnnnbb]dddd]ccc	chr17:79817090-79817362(-)$1	272	196	222	11.3357
dddd"""cccnnnnncccddddbb[c	chr15:90347675-90347922(-)$1	247	91	117	12.4683
gg####cccooooooccc22gggggg	chr4:3520603-3520820(-)$1	217	94	120	10.2834
dd[dddd[bbnnnnnbb]dddd]ddd	chr7:128398867-128399112(+)$1	245	195	221	11.4347
##dddd[cccnnnnncccdddd333d	chr11:902144-902431(-)$1	287	94	120	12.4209
!a[ccc[cccnnnnnccc]ccca22d	chr11:118921659-118921920(-)$1	261	145	171	13.2267
bb!!ccc[bbnnnnnbb]ccc]bb]d	chr4:3520495-3520738(-)$1	243	45	71	10.9781
[dddd!!cccnnnnnccc]dddd]bb	chr17:79804236-79804469(-)$1	233	19	45	13.1959
gg[ccc!!bbnnnnnbb22ccc333g	chr3:186791847-186792070(+)$1	223	14	40	12.9306
eee"""cccooooooccc]eeeeeHH	chr16:3071578-3071791(+)$1	213	29	55	8.9141
==[ccc[cccnnnnnccc]ccc5555	chr3:195794344-195794629(-)$1	285	207	233	10.6121
ddd[ccccccnnnnnccc]cccdddd	chr17:76969078-76969298(-)$1	220	162	188	13.2978
eeeee!!cccooooooccc]eeeee:	chr4:3519806-3520020(-)$1	214	60	86	9.1374
ffff"""cccnnnnnccc333fffff	chr6:43480397-43480655(-)$1	258	142	168	13.3146
ccc"""ddddnnnnndddd333ccc9	chr3:119198870-119199119(+)$1	249	140	166	10.7243
[dddd!!a[annnnna]a22dddd]e	chr16:58195300-58195569(-)$1	269	130	156	12.4796
eee!!eeeeennnnneeeeeeeeeec	chr6:33744678-33744934(-)$1	256	203	229	9.6228
iiiiiiiiiccclllccc]iiiiiii	chr16:29912748-29913043(+)$1	295	142	168	8.7400
eee"""a[bboooooobb]a333eee	chr7:100780611-100780834(+)$1	223	148	174	9.6709
eeeccc!!bbnnnnnbb22ccc]eee	chr1:92184779-92185029(-)$1	250	125	151	12.5909
GG:ccc[cccnnnnnccc]ccceeee	chr2:97377292-97377588(-)$1	296	90	116	11.2135
cccccc!!ccclllccc22ccc]ccc	chr6:29798055-29798287(+)$1	232	1	27	9.8606
dd[dddd[cccmmmmccc333dddd]	chr17:7076982-7077207(-)$1	225	139	165	8.6327
c"""ffffffnnnnnffffff22ccc	chr17:76968353-76968601(-)$1	248	207	233	9.4646
[eeeee[cccnnnnnccceeeee]a2	chr6:167342995-167343336(-)$1	341	180	206	12.0659
d[bb"""cccnnnnnccc22bbdddd	chr5:135397159-135397368(+)$1	209	74	100	12.6719
iiiiii"""annnnna333iiiiiii	chr11:57506549-57506801(+)$1	252	6	32	12.4035
ccc[ccc!!ccclllccc22ccc]cc	chr2:85782505-85782742(-)$1	237	138	164	9.5006
[dddd"""ccclllcccdddddddd>	chr11:1774984-1775192(-)$1	208	117	143	9.1451
ddd[a"""cccmmmmccc333a]ddd	chr17:76970670-76970914(-)$1	244	84	110	9.6700
ee!!ccc!!annnnna22ccc]eeee	chr3:149093179-149093400(-)$1	221	115	141	11.5129
DDccc!!cccnnnnnccc22ccc::c	chr3:133476603-133476828(+)$1	225	139	165	10.4399
cc[bb[a[bbnnnnnbb]a]bb]ccc	chr1:1374923-1375158(+)$1	235	144	170	11.4682
fffff[a[bbnnnnnbb]affffff]	chr20:44526544-44526824(+)$1	280	245	271	10.9590
g[eeeee[bbnnnnnbb]eeeee22g	chr11:118918949-118919175(-)$1	226	170	196	10.4907
ddddccccccnnnnnccc]ccccccq	chr17:79803385-79803624(-)$1	239	85	111	12.6990
dd!!bb[cccnnnnncccbb22dddd	chr19:48833463-48833740(+)$1	277	151	177	11.7010
deeeee[cccnnnnnccceeeee444	chr1:22150979-22151206(-)$1	227	146	172	12.2360
cc[ccc!!bbnnnnnbb22ccc]ccc	chr20:33148662-33148884(-)$1	222	3	29	12.9633
[dddd[ddddnnnnndddd]dddd22	chr4:3526629-3526878(-)$1	249	113	139	10.4416
[dddd"""bboooooobb22dddd]d	chr15:64448133-64448374(-)$1	241	133	159	9.9230
fffff!!cccnnnnnccc22ffffff	chr6:7899787-7900004(-)$1	217	3	29	12.6729
fff[ccc[bbnnnnnbb]ccc]ffff	chr7:75609701-75609906(+)$1	205	55	81	11.4002
:ddddaddddnnnnndddd]a]dddd	chr17:79813012-79813227(-)$1	215	55	81	9.4783
eeee[bbcccnnnnnccc]bbeeeee	chr7:128407559-128407793(+)$1	234	60	86	11.6858

#otherMatches

#Seq PSSM
GGGACGCCCCUUUGAGGGACCCAGCC	chr17:42429934-42430159(+)$1	225	188	214	9.0113
cuCAGUGACUGUGCAGGUAGACUGAG	chr19:47285668-47285906(-)$1	238	39	65	12.1303
GCAGGAAGGCAGCAAGUCCCCACCUC	chr1:92149186-92149431(-)$1	245	25	51	11.5110
GAGGCCCAGUACAACAACUUCUCAGG	chr19:1924109-1924387(+)$1	278	87	113	10.2346
GGGCCUCACCAAGUCUGGCGGCUCAG	chr17:76967711-76967938(-)$1	227	34	60	8.9498
ACUGCCCCUCAAUGCAGGAGCAGCAC	chr1:156263834-156264118(-)$1	284	248	274	8.9487
UGCAGAGUCCUUGGUGGAGUCCAGCG	chr17:79813343-79813562(-)$1	219	182	208	11.9790
GGUGGACGCCACGGAGGAGUCUGACC	chr17:79817090-79817362(-)$1	272	196	222	11.3357
GCCCAGUGCCAUUGCGGCGGGCCACG	chr15:90347675-90347922(-)$1	247	91	117	12.4683
CCUCUUAGGCGAAGACCUCUGGGAAA	chr4:3520603-3520820(-)$1	217	94	120	10.2834
AUGACUACAUGAAAGAUAUAGUAGUA	chr7:128398867-128399112(+)$1	245	195	221	11.4347
UUGCCAGUGGAACAGCCAUGGCUACG	chr11:902144-902431(-)$1	287	94	120	12.4209
AUGAGAGUGGCGUGCUCAGUCUAGAC	chr11:118921659-118921920(-)$1	261	145	171	13.2267
GCGAAGAACUGGACAAGCUCUGGCGG	chr4:3520495-3520738(-)$1	243	45	71	10.9781
UCUUUGGCCUGAAGAAGGAAGAGUGC	chr17:79804236-79804469(-)$1	233	19	45	13.1959
CAUGUCCACUGAUGAAGAUGACUCCU	chr3:186791847-186792070(+)$1	223	14	40	12.9306
CGCUCUGAGCCUGACCUUCGUGCUGG	chr16:3071578-3071791(+)$1	213	29	55	8.9141
CAAUCUCCAGAGCUGCUGCAGAAAAG	chr3:195794344-195794629(-)$1	285	207	233	10.6121
CCCAGGCCCUGUGGAAGGAGCCGGGC	chr17:76969078-76969298(-)$1	220	162	188	13.2978
AGGACUCCCAGCCUCAUGGCGUCCUG	chr4:3519806-3520020(-)$1	214	60	86	9.1374
UCCACACUGCGCAUGGUAAGCUGGGC	chr6:43480397-43480655(-)$1	258	142	168	13.3146
UCUGGUAAGGUAGGUCCUUUAAAGAG	chr3:119198870-119199119(+)$1	249	140	166	10.7243
ugugugugucuguguguCUAAUAUUU	chr16:58195300-58195569(-)$1	269	130	156	12.4796
GGUGAGUCCCUGGCUGGGGCGCUGGG	chr6:33744678-33744934(-)$1	256	203	229	9.6228
UUGUGCCGCGGGACGCCCAGCGGCAC	chr16:29912748-29913043(+)$1	295	142	168	8.7400
GAGAUGCAUCGGGAAAGAAGAAACUC	chr7:100780611-100780834(+)$1	223	148	174	9.6709
UGGUCAGCCCUUGAUGGUGUGGUCUA	chr1:92184779-92185029(-)$1	250	125	151	12.5909
GAUAUUGAUGGCAAGCAUGAGUGGAG	chr2:97377292-97377588(-)$1	296	90	116	11.2135
UCUGGAAACUUCUCGAGGGUCCAAGA	chr6:29798055-29798287(+)$1	232	1	27	9.8606
CCGCUGGAACGACGACGUCUGCCAGA	chr17:7076982-7077207(-)$1	225	139	165	8.6327
GCUUGGUGGAGAAGAUCCGCUUCCCC	chr17:76968353-76968601(-)$1	248	207	233	9.4646
GGGGCCGCCGAGAGCCGGGGUCUGAG	chr6:167342995-167343336(-)$1	341	180	206	12.0659
UUGAGAUCUUCAAACAAGCAUCAGCG	chr5:135397159-135397368(+)$1	209	74	100	12.6719
UGAGUGAUACAUACAGGGACAUUUAG	chr11:57506549-57506801(+)$1	252	6	32	12.4035
GAGUGGCAGUCAUGGUGGAGGCCUCU	chr2:85782505-85782742(-)$1	237	138	164	9.5006
AGGCAAAGGCUACAAGCUGUCCCCAG	chr11:1774984-1775192(-)$1	208	117	143	9.1451
CUGGGCUGGCUGAAGAGCAACUGCAG	chr17:76970670-76970914(-)$1	244	84	110	9.6700
CUAUGUCUUGAUUCCCUCGGCCAGUG	chr3:149093179-149093400(-)$1	221	115	141	11.5129
UGGGCUAUGAGUAUGUCACUGCCAUC	chr3:133476603-133476828(+)$1	225	139	165	10.4399
CGCGCUGUCCGCCAAGGCCUGCACGC	chr1:1374923-1375158(+)$1	235	144	170	11.4682
AAGGAGCAGGACCCACCCGUCCUUUC	chr20:44526544-44526824(+)$1	280	245	271	10.9590
CGCAUCCACCUGGCUGGAGGAUGAGG	chr11:118918949-118919175(-)$1	226	170	196	10.4907
CAUCGUCAUCGCCAAGAUGGACUCGA	chr17:79803385-79803624(-)$1	239	85	111	12.6990
AGAAGCACCCGCGAGGGGGCAGCUUC	chr19:48833463-48833740(+)$1	277	151	177	11.7010
AGCCAGUGGCCUCCUGCUCUGGCAGG	chr1:22150979-22151206(-)$1	227	146	172	12.2360
GGCGUUCCUGUCUUCCAACAACACCU	chr20:33148662-33148884(-)$1	222	3	29	12.9633
CCGUGAGGCUGGCCGAGCUCCACGCU	chr4:3526629-3526878(-)$1	249	113	139	10.4416
UUGCCAUCGCCAAGGAGUAGGGCACA	chr15:64448133-64448374(-)$1	241	133	159	9.9230
CAUUUUCUGAUUGUUUCACUAAAUGA	chr6:7899787-7900004(-)$1	217	3	29	12.6729
ACGACUGGCUGCAGGAGACAGACGUG	chr7:75609701-75609906(+)$1	205	55	81	11.4002
UCUCCCUCCUCAUUCAGGACGUGGAG	chr17:79813012-79813227(-)$1	215	55	81	9.4783
GAAGAGACCAAAGACUGGAUCCUUCC	chr7:128407559-128407793(+)$1	234	60	86	11.6858

#DB
(((...(((......))).)))))).	chr17:42429934-42430159(+)$1	1	188	214	9.0113
((((((.(((.....)))..))))))	chr19:47285668-47285906(-)$1	1	39	65	12.1303
(..((..(((.....)))))..))))	chr1:92149186-92149431(-)$1	1	25	51	11.5110
((((...(((......)))))))(((	chr19:1924109-1924387(+)$1	1	87	113	10.2346
(((((...(((....))).)))))))	chr17:76967711-76967938(-)$1	1	34	60	8.9498
.((((.(((......))).)))))).	chr1:156263834-156264118(-)$1	1	248	274	8.9487
((..((.(((.....))).)))))).	chr17:79813343-79813562(-)$1	1	182	208	11.9790
(((((((.((.....)).)))).)))	chr17:79817090-79817362(-)$1	1	196	222	11.3357
((((...(((.....)))))))((.(	chr15:90347675-90347922(-)$1	1	91	117	12.4683
((....(((......)))..))))))	chr4:3520603-3520820(-)$1	1	94	120	10.2834
((.((((.((.....)).)))).)))	chr7:128398867-128399112(+)$1	1	195	221	11.4347
..((((.(((.....)))))))...)	chr11:902144-902431(-)$1	1	94	120	12.4209
.(.(((.(((.....))).))))..)	chr11:118921659-118921920(-)$1	1	145	171	13.2267
((..(((.((.....)).))).)).)	chr4:3520495-3520738(-)$1	1	45	71	10.9781
.((((..(((.....))).)))).))	chr17:79804236-79804469(-)$1	1	19	45	13.1959
((.(((..((.....))..)))...)	chr3:186791847-186792070(+)$1	1	14	40	12.9306
(((...(((......))).)))))((	chr16:3071578-3071791(+)$1	1	29	55	8.9141
((.(((.(((.....))).)))....	chr3:195794344-195794629(-)$1	1	207	233	10.6121
(((.((((((.....))).)))))))	chr17:76969078-76969298(-)$1	1	162	188	13.2978
(((((..(((......))).))))).	chr4:3519806-3520020(-)$1	1	60	86	9.1374
((((...(((.....)))...)))))	chr6:43480397-43480655(-)$1	1	142	168	13.3146
(((...((((.....))))...))).	chr3:119198870-119199119(+)$1	1	140	166	10.7243
.((((..(.(.....).)..)))).)	chr16:58195300-58195569(-)$1	1	130	156	12.4796
(((..(((((.....)))))))))))	chr6:33744678-33744934(-)$1	1	203	229	9.6228
((((((((((((...))).)))))))	chr16:29912748-29913043(+)$1	1	142	168	8.7400
(((...(.((......)).)...)))	chr7:100780611-100780834(+)$1	1	148	174	9.6709
((((((..((.....))..))).)))	chr1:92184779-92185029(-)$1	1	125	151	12.5909
((.(((.(((.....))).)))((((	chr2:97377292-97377588(-)$1	1	90	116	11.2135
((((((..(((...)))..))).)))	chr6:29798055-29798287(+)$1	1	1	27	9.8606
((.((((.(((....)))...)))).	chr17:7076982-7077207(-)$1	1	139	165	8.6327
(...((((((.....))))))..)))	chr17:76968353-76968601(-)$1	1	207	233	9.4646
.(((((.(((.....)))))))).).	chr6:167342995-167343336(-)$1	1	180	206	12.0659
(.((...(((.....)))..))))))	chr5:135397159-135397368(+)$1	1	74	100	12.6719
((((((...(.....)...)))))))	chr11:57506549-57506801(+)$1	1	6	32	12.4035
(((.(((..(((...)))..))).))	chr2:85782505-85782742(-)$1	1	138	164	9.5006
.((((...(((...))))))))))).	chr11:1774984-1775192(-)$1	1	117	143	9.1451
(((.(...(((....)))...).)))	chr17:76970670-76970914(-)$1	1	84	110	9.6700
((..(((..(.....)..))).))))	chr3:149093179-149093400(-)$1	1	115	141	11.5129
))(((..(((.....)))..)))..(	chr3:133476603-133476828(+)$1	1	139	165	10.4399
((.((.(.((.....)).).)).)))	chr1:1374923-1375158(+)$1	1	144	170	11.4682
(((((.(.((.....)).))))))).	chr20:44526544-44526824(+)$1	1	245	271	10.9590
(.(((((.((.....)).)))))..)	chr11:118918949-118919175(-)$1	1	170	196	10.4907
))))((((((.....))).)))(((.	chr17:79803385-79803624(-)$1	1	85	111	12.6990
((..((.(((.....)))))..))))	chr19:48833463-48833740(+)$1	1	151	177	11.7010
((((((.(((.....))))))))...	chr1:22150979-22151206(-)$1	1	146	172	12.2360
((.(((..((.....))..))).)))	chr20:33148662-33148884(-)$1	1	3	29	12.9633
.((((.((((.....)))).))))..	chr4:3526629-3526878(-)$1	1	113	139	10.4416
.((((...((......))..)))).)	chr15:64448133-64448374(-)$1	1	133	159	9.9230
(((((..(((.....)))..))))))	chr6:7899787-7900004(-)$1	1	3	29	12.6729
(((.(((.((.....)).))).))))	chr7:75609701-75609906(+)$1	1	55	81	11.4002
.(((((((((.....)))).).))))	chr17:79813012-79813227(-)$1	1	55	81	9.4783
((((.(((((.....))).)))))))	chr7:128407559-128407793(+)$1	1	60	86	11.6858

#PSSM
d : 0.21	[ : 0.13	c : 0.13	e : 0.13	f : 0.11	g : 0.07	i : 0.03	a : 0.01	# : 0.01	! : 0.01	b : 0.01	= : 0.01	G : 0.01	D : 0.01	: : 0.01	
d : 0.30	e : 0.17	f : 0.11	c : 0.11	g : 0.05	i : 0.03	[ : 0.03	! : 0.01	# : 0.01	a : 0.01	b : 0.01	= : 0.01	G : 0.01	" : 0.01	D : 0.01	
d : 0.24	e : 0.17	[ : 0.13	f : 0.11	! : 0.09	c : 0.09	i : 0.03	g : 0.01	# : 0.01	: : 0.01	" : 0.01	b : 0.01	
d : 0.26	c : 0.15	" : 0.09	! : 0.09	e : 0.09	f : 0.07	[ : 0.07	b : 0.05	i : 0.03	g : 0.01	# : 0.01	
c : 0.26	d : 0.21	" : 0.15	f : 0.07	b : 0.07	e : 0.07	i : 0.03	g : 0.01	# : 0.01	! : 0.01	a : 0.01	[ : 0.01	
c : 0.24	" : 0.23	! : 0.11	[ : 0.07	d : 0.07	e : 0.07	b : 0.05	f : 0.03	i : 0.03	# : 0.01	a : 0.01	
c : 0.19	! : 0.19	[ : 0.17	" : 0.17	d : 0.11	a : 0.05	e : 0.03	i : 0.01	f : 0.01	b : 0.01	
c : 0.48	[ : 0.17	! : 0.11	" : 0.09	d : 0.05	a : 0.01	e : 0.01	i : 0.01	f : 0.01	
c : 0.57	b : 0.23	d : 0.05	! : 0.03	[ : 0.01	e : 0.01	i : 0.01	f : 0.01	" : 0.01	
c : 0.53	b : 0.23	o : 0.07	d : 0.05	a : 0.05	e : 0.01	f : 0.01	
n : 0.71	o : 0.15	c : 0.13	
n : 0.71	o : 0.15	m : 0.05	c : 0.03	l : 0.03	
n : 0.71	o : 0.15	l : 0.07	m : 0.05	
n : 0.71	o : 0.15	l : 0.07	m : 0.05	
n : 0.71	o : 0.15	m : 0.05	l : 0.03	c : 0.03	
c : 0.57	b : 0.19	o : 0.07	d : 0.05	a : 0.05	e : 0.01	f : 0.01	
c : 0.61	b : 0.23	d : 0.05	] : 0.01	e : 0.01	f : 0.01	3 : 0.01	2 : 0.01	
c : 0.57	] : 0.13	2 : 0.09	d : 0.07	b : 0.03	a : 0.01	e : 0.01	f : 0.01	3 : 0.01	
] : 0.26	2 : 0.23	d : 0.15	c : 0.09	3 : 0.07	e : 0.07	b : 0.03	a : 0.03	f : 0.01	
c : 0.23	2 : 0.15	d : 0.15	e : 0.09	b : 0.07	] : 0.07	3 : 0.07	f : 0.05	i : 0.03	g : 0.01	a : 0.01	
c : 0.26	d : 0.21	e : 0.11	f : 0.09	3 : 0.09	b : 0.07	2 : 0.03	g : 0.03	i : 0.03	a : 0.01	
d : 0.24	c : 0.21	e : 0.13	f : 0.09	] : 0.07	2 : 0.05	g : 0.03	3 : 0.03	i : 0.03	b : 0.03	a : 0.01	
d : 0.24	e : 0.17	] : 0.13	f : 0.11	c : 0.07	3 : 0.05	a : 0.03	g : 0.03	b : 0.03	i : 0.03	5 : 0.01	2 : 0.01	
d : 0.24	e : 0.15	f : 0.13	c : 0.13	b : 0.05	] : 0.05	g : 0.03	3 : 0.03	2 : 0.03	i : 0.03	5 : 0.01	: : 0.01	4 : 0.01	
d : 0.19	c : 0.15	f : 0.13	e : 0.13	2 : 0.05	] : 0.05	g : 0.03	b : 0.03	3 : 0.03	i : 0.03	[ : 0.01	H : 0.01	5 : 0.01	a : 0.01	: : 0.01	4 : 0.01	
d : 0.21	c : 0.17	e : 0.11	f : 0.09	: : 0.07	g : 0.07	i : 0.03	] : 0.03	2 : 0.03	b : 0.01	H : 0.01	5 : 0.01	9 : 0.01	> : 0.01	q : 0.01	4 : 0.01	

#score	574.8463108691715
#seq	52
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_UTR_m1_run2.txt

#BEAR
[bb####ccc!!a[ccclllccc]a22ccc333bb]bb33	chr11:61583649-61583935(-)$1	286	109	149	12.9910
gggg!!ccc==========oooooo==========]ccc6	chr11:236933-237215(+)$1	282	20	60	14.9302
ff!!dddd####ccccccmmmmccc]ccc333dddd22ff	chr8:124221218-124221484(+)$1	266	198	238	15.0459
i[ccc$$$$$eeeee[bbmmmmbb]eeeee22ccciiiii	chr6:32157447-32157877(-)$1	430	282	322	12.1979
ffff"""a[eeeeeddddmmmmdddd333eeeee]a333f	chr10:103874431-103874695(-)$1	264	201	241	12.1407
""ccc[cccccc[cccbbnnnnnbb]ccc]ccc]ccc]cc	chr7:50860927-50861228(-)$1	301	147	187	14.2222
ggggggiiiiiiiii[annnnna]iiiiiiiii333gggg	chr7:1577315-1577608(+)$1	293	115	155	14.5396
iiiii[ccc[bb!!bboooooobb22bbccc]iiiiiiii	chr11:554461-554755(+)$1	294	40	80	13.6572
:===========bb[bboooooobb]bb4444========	chr1:2125400-2125682(-)$1	282	158	198	14.6294
eeeee####ccc[bb[ammmma]bb]ccc333eeeee]ee	chr11:63742040-63742313(+)$1	273	186	226	12.2440
ggggg[a[ccc[bb[cccnnnnnccc]bb]ccc]a]gggg	chr8:1772078-1772426(+)$1	348	177	217	14.1074
!!dddd!!gggggggcccmmmmccc4444ggggggg22dd	chr7:100273356-100273604(+)$1	248	183	223	14.0194
ddd!!cccbb!!ccccccmmmmccc333ccc22bb333cc	chr7:22862255-22862561(-)$1	306	138	178	14.4954
ebb[dddd"""ccccccnnnnnccc]ccc22dddd333bb	chr16:83841505-83841826(+)$1	321	267	307	14.0504
[ccc[bb[a!!a[eeeeellleeeee]a22a]bb]ccc22	chr1:54871820-54872061(-)$1	241	17	57	12.0439
=============a[ddddoooooodddd]a]========	chr2:27294366-27294597(-)$1	231	152	192	14.9771
a[ccc[a[iiiiiiiiinnnnniiiiiiiiiaccc]a]ff	chr22:20105265-20105523(+)$1	258	20	60	13.7880
=========[ggggggg[annnnna]ggggggg]======	chr17:76793997-76794250(-)$1	253	99	139	14.5267
========="""eeeeeooooooeeeee333=========	chr14:50359732-50359973(+)$1	241	30	70	16.5779
dd]bbeeeee!!a!!cccmmmmccc22aeeeeeggggggg	chr20:57582066-57582331(-)$1	265	140	180	12.3194
::ggggggg[a[dddd[ammmma]dddd333a]ggggggg	chr16:85646596-85646866(+)$1	270	224	264	12.4750
ii[eeeee"""bb!!ccclllccc333bb]eeeee]iiii	chr6:3259118-3259396(+)$1	278	209	249	13.9899
[dddd"""a[ccc[a[bblllbb]a]ccc]a4444dddd2	chr5:141488282-141488530(+)$1	248	136	176	13.7845
dddd!!ccc[dddd[bboooooobbdddd22ccc333ddd	chr2:27249713-27249979(+)$1	266	100	140	13.2262
iii[a[dddd!!a[cccnnnnnccc]a]dddd333a]iii	chr17:76120140-76120391(-)$1	251	39	79	14.3735
eeee[dddd"""cccabbmmmmbb]a]ccc]dddd22eee	chr22:19710379-19710611(+)$1	232	88	128	12.2589
bb[ccc$$$$$ccc[cccmmmmccc]ccc22ccc]bb444	chr2:97535500-97535818(-)$1	318	29	69	14.2100
iiii[ccca[eeeeerrrrrrrrreeeee]a333ccc]ii	chr8:125551304-125551577(+)$1	273	205	245	12.5020
=======[eeeeecccooooooccc22eeeee]=======	chr12:56633891-56634157(-)$1	266	49	89	14.5005
"ccc"""==========nnnnn==========333cccee	chr19:50168359-50168646(-)$1	287	107	147	15.2452
"ccc[bb[ccc[ccc[ccclllccc]ccc]ccc]bb]ccc	chr22:46505735-46506026(+)$1	291	238	278	14.7516
eee[eeeee####ddddoooooodddd333eeeee]eeee	chr8:101963101-101963366(-)$1	265	190	230	12.3755
[abb!!ggggggg[a[bbmmmmbba]ggggggg333bb]a	chr2:178077421-178077628(+)$1	207	138	178	13.2592
dddd!!ggggggg[ddddmmmmdddd333ggggggg22dd	chr11:118926684-118926964(-)$1	280	112	152	12.8681
:ggggggg[a[ccc[cccmmmmcccccc22a]gggggggf	chr17:76122910-76123195(-)$1	285	143	183	14.2706
iiii!!ccc[a!!bboooooobb22a]ccc]iiiiiiiii	chr8:30670117-30670389(-)$1	272	198	238	13.7292
=======####ccc[ddddlllddddccc4444=======	chr5:177631461-177631706(+)$1	245	86	126	16.3222
gccc!!ccc"""cccbb[==========lll=========	chr5:154320671-154320915(+)$1	244	131	171	13.3655
[ccc!!ccc[bb[ccccccooooooccc333ccc]bb]cc	chr16:1495790-1496031(-)$1	241	63	103	14.7531
c[ccc[bb[eeeee!!ccclllccc]eeeee]bbccc]cc	chr3:10362627-10362887(-)$1	260	82	122	12.6879
ccc"""ccc[ccc!!cccmmmmccc22cccccc22ccc44	chr15:34393760-34394115(-)$1	355	143	183	15.2142
""ggggggg[eeeeecccnnnnnccc4444eeeee]gggg	chr9:131832944-131833212(+)$1	268	75	115	13.6964
eeeee[ccc[ccceeeeeooooooeeeee]ccc]ccceee	chr17:46656338-46656615(-)$1	277	48	88	12.5883
iiii!!ccc[a[ccccccmmmmccc]ccc]a]ccc]iiii	chr10:88854837-88855112(+)$1	275	90	130	17.6831
dddd[bb[cccccc[cccmmmmccc]ccc]ccc]bb22dd	chr19:50168527-50168748(-)$1	221	130	170	13.8904
ddddccc"""ccc[a!!ammmma22a]ccc22ccc333dd	chr8:30669816-30670089(-)$1	273	40	80	14.0235
cccc[iiiiiiiiicccnnnnnccc]iiiiiiiii333cc	chr19:1881743-1882014(-)$1	271	144	184	15.6363
b[ccc[ccc[a!!cccccclllccc]ccc22accc]ccc]	chr16:1921912-1922181(-)$1	269	74	114	16.3140
ccc[dddd!!ccc[ddddmmmmdddd]cccdddd22ccc2	chr19:1853511-1853750(-)$1	239	122	162	12.1628
edddddddd[ccc[ddddlllddddccc333dddd]dddd	chr5:112312414-112312740(+)$1	326	46	86	11.8330
=======[a[a[ffffffnnnnnffffff]a]a]======	chr19:1009912-1010208(-)$1	296	210	250	14.2932
d!!dddd"""dddd[cccmmmmccc]dddd4444dddd22	chr10:23003160-23003417(-)$1	257	96	136	12.9276
!!bb[dddd[a!!cccccclllccc]ccc22a]dddd]bb	chr7:26240179-26240460(-)$1	281	92	132	14.1843
iiiiiiii####cccrrrrrrrrrccc4444iiiiiiiii	chr12:110719426-110719711(+)$1	285	94	134	14.6102
iiiiiiiii%%%%%%cccooooooccc333iiiiiiiii2	chr19:39109744-39110034(+)$1	290	173	213	12.8769
gggg!!ccc"""bb[ddddoooooodddd]bb22ccc]gg	chr5:130500781-130501060(-)$1	279	64	104	13.0715
cccdddd####ccc[cccmmmmccc]cccdddd4444ccc	chr3:49058432-49058684(-)$1	252	161	201	14.9604
ggggg!!bb"""ccc[bbmmmmbb]ccc22bb333ggggg	chr22:24236493-24236857(+)$1	364	96	136	14.2905
gg"""a[==========aooooooa]==========]a33	chr19:7978321-7978579(+)$1	258	86	126	16.3241
!!ggggggg[eeeee[ccclllccceeeeeggggggg22b	chrX:109245771-109246068(+)$1	297	235	275	13.0408

#otherMatches

#Seq PSSM
CUGGGGAGUGGGGAUGGAGGCCAACAACACGCACACACAA	chr11:61583649-61583935(-)$1	286	109	149	12.9910
CCGCUCGGCGCCGGAAGUGAGUGAGCAUUUCCGGCAGCCA	chr11:236933-237215(+)$1	282	20	60	14.9302
UUGUCGGUUUUUGGCGGGGAAGCUCAGCCUUCGCUGUGGA	chr8:124221218-124221484(+)$1	266	198	238	15.0459
GUGGCGGAGACCCCGGUGGGGGUAGCGGGGGGGUCCCGGG	chr6:32157447-32157877(-)$1	430	282	322	12.1979
gagcagCCAUUGUUGAGGGAAACCUUGCAAACAAAGAAGG	chr10:103874431-103874695(-)$1	264	201	241	12.1407
AAGUUUCCGCGCAGCCCCUGGGUGGCGGCAgcgccggcgg	chr7:50860927-50861228(-)$1	301	147	187	14.2222
UCCCUGGCCCAGGGUGUGGGGAGGGUCCUGGGCUGGCAGG	chr7:1577315-1577608(+)$1	293	115	155	14.5396
GGGUCCGGCUCCCCAGCCCUUCCUUAGGGCCAGGCUUUCC	chr11:554461-554755(+)$1	294	40	80	13.6572
GCGGCUCUGGGCCGAGCUACUGCGCACGGUGAGCCCGGAG	chr1:2125400-2125682(-)$1	282	158	198	14.6294
GAUCCAUUCGUUGCCGCCGGAGGGGAAGCUUGGGAUCAUG	chr11:63742040-63742313(+)$1	273	186	226	12.2440
gcgggUCGCGUCCUGGCCGCCGAGGUGAGUGCGGGCCCCG	chr8:1772078-1772426(+)$1	348	177	217	14.1074
CUGUGUCCGAGGGAGGGGUUUCCCCUGCGCUUCCUCUUGC	chr7:100273356-100273604(+)$1	248	183	223	14.0194
CUCCCUGCGCCACACGGCCGUCGCCAUGGUGAAGCUGAGC	chr7:22862255-22862561(-)$1	306	138	178	14.4954
CGCCGGGCCAAGCCCUGCUGGACAGAGGCGCGCCCACCGC	chr16:83841505-83841826(+)$1	321	267	307	14.0504
ggcggcggcagcggUGCUGGAGGCGCAGAGGGCGGCGCAG	chr1:54871820-54872061(-)$1	241	17	57	12.0439
CCACGGGCCAGCCCCGCCGUGGCCGUGGCCGUGGCUGGCC	chr2:27294366-27294597(-)$1	231	152	192	14.9771
CGGCCUGCAGGCUCGGCCGUCUGCUGGGCCUCGGUGGCGC	chr22:20105265-20105523(+)$1	258	20	60	13.7880
GGUGUGUGUGGGAUGUGGGUUGUGUGUAUAUCUGGCAUGU	chr17:76793997-76794250(-)$1	253	99	139	14.5267
CGGGAGGGGAAGUGAGGCGGUUUCCUCGGCGCCUUUUCCG	chr14:50359732-50359973(+)$1	241	30	70	16.5779
gcggggccauggcgaggcgcgggccaggguggcggcCGCU	chr20:57582066-57582331(-)$1	265	140	180	12.3194
GUCCUCGGCGGCGACAGCAGCAGGUGUUUCUUGGCCGGGG	chr16:85646596-85646866(+)$1	270	224	264	12.4750
GCUGGUCCACUUCCACGUCAUGCGGCUGACGGACUCGCUG	chr6:3259118-3259396(+)$1	278	209	249	13.9899
CGGCCAUCGAGACCCACCCAAGGCGCGUCCCCCUCGGCCU	chr5:141488282-141488530(+)$1	248	136	176	13.7845
GGGCAUGUGAGGGAUGGAAAUGACCUCCUGGCACCAGGCU	chr2:27249713-27249979(+)$1	266	100	140	13.2262
CCUCCUCCUGCUCUGCCCCUGUGGCUGUCAGGCCUGAGGG	chr17:76120140-76120391(-)$1	251	39	79	14.3735
GUCUUCCCUUAUCCCCAGACGCCUAGCGGGCAGGGUUGGG	chr22:19710379-19710611(+)$1	232	88	128	12.2589
GCGCGGGGAGCCCGAGCCUAggggcgcggagccgggcggg	chr2:97535500-97535818(-)$1	318	29	69	14.2100
AGUCGUGGUGCGUCCAGAGGUAAGGGAUGGGGACCCAGGA	chr8:125551304-125551577(+)$1	273	205	245	12.5020
UCAGAGGGUGAGAUGGAAAGAGCCAGUUUUUAGUUUCUGA	chr12:56633891-56634157(-)$1	266	49	89	14.5005
UGGGAGAUCUUCUGUAGGGGGACUGUGGAAGGGGGUCUAC	chr19:50168359-50168646(-)$1	287	107	147	15.2452
UGGUGAGCACUGUAGGCUCUAGGAGGCUGAAGUCCUGGCC	chr22:46505735-46506026(+)$1	291	238	278	14.7516
UGCGCUCGGUUUGGGGACGCAUAUCCUGCUUUGGGGGCGG	chr8:101963101-101963366(-)$1	265	190	230	12.3755
GCCCGACUCCGGCCGUCGCCGUCGCCGCCGGGGGGAGGAG	chr2:178077421-178077628(+)$1	207	138	178	13.2592
GCAGAGGCCGAGGAGGCGAGUCUGUUGGGCCUUGGUGGCU	chr11:118926684-118926964(-)$1	280	112	152	12.8681
UGGGUGGUGUGGACAGCUGCCAGGCGUUGAAGACCACCCC	chr17:76122910-76123195(-)$1	285	143	183	14.2706
ccgcggcgcgcggccgggcggggaagggcgggcgggggUC	chr8:30670117-30670389(-)$1	272	198	238	13.7292
CGCGGGACGGAGCUUGGCUGUUGGUCGGUGGGUUCCCGUG	chr5:177631461-177631706(+)$1	245	86	126	16.3222
AGCCGGGGGAAGCUGGCCUUGGGGUGAGUCUCUCGCUUCG	chr5:154320671-154320915(+)$1	244	131	171	13.3655
UGUGAUGUUGAGAGCUGAGAAAAACCUCCAAGGCCCUGAG	chr16:1495790-1496031(-)$1	241	63	103	14.7531
AAGUGAGCUGUUCCGAGGCGCCGCCGGGAGCUGCCACGUC	chr3:10362627-10362887(-)$1	260	82	122	12.6879
CUCGGAGGUGCCCGGGGCUGCUGCUGAGGGAUCGGGAGGG	chr15:34393760-34394115(-)$1	355	143	183	15.2142
AACCUCCCAUCGCUCCAGGGCUGCUGACAAGGGUGCUGGG	chr9:131832944-131833212(+)$1	268	75	115	13.6964
GUCUAUAGUGUGGGAAACCAAGUCGUUUCUCCAGGCUUGG	chr17:46656338-46656615(-)$1	277	48	88	12.5883
ggucggggcgggucggggcgggCCCACGGGCGGCCGGAUU	chr10:88854837-88855112(+)$1	275	90	130	17.6831
CUGGGGCGUGCUCUGUCCUGGAGGAGGGAGGCGGGCAGUC	chr19:50168527-50168748(-)$1	221	130	170	13.8904
cggcggcggagggagaggggagcggcgcccgggccggggc	chr8:30669816-30670089(-)$1	273	40	80	14.0235
CUCCCGGGGGUGCCCAGCUGGACUGUGGCACCCCCAAAGG	chr19:1881743-1882014(-)$1	271	144	184	15.6363
GUCCUGUGGAGAAGCCGCGAAGCGCGGGCGACCCGGGGGU	chr16:1921912-1922181(-)$1	269	74	114	16.3140
GGCUGGCACCGGGCUUGGGCCUCCAGUCCCUGCCUUGCUG	chr19:1853511-1853750(-)$1	239	122	162	12.1628
GGACGGAAGUGAGCGGGUCCCGCCCCUUCCCCUUCUCGUC	chr5:112312414-112312740(+)$1	326	46	86	11.8330
GCCGGCUUGGGGUGGGGCCUCGCGCCCUAGUGCCGGCCGG	chr19:1009912-1010208(-)$1	296	210	250	14.2932
GGGGUGUAGAGAGGGCGGGUCCCCGGCCUCGGGAGCACGG	chr10:23003160-23003417(-)$1	257	96	136	12.9276
GCAGUAGCAGCAGCGCCGGGUCCCGUGCGGAGGUGCUCCU	chr7:26240179-26240460(-)$1	281	92	132	14.1843
CCGCGGCCGGAGUGCGAGGCGGAGGCGAGGAGGCCGCGGG	chr12:110719426-110719711(+)$1	285	94	134	14.6102
UUUGAGCAGAUGAGAGCCAACGUGGGCAAGUUGCUCAAGG	chr19:39109744-39110034(+)$1	290	173	213	12.8769
UGCGCAGGCUUGGCUGCGCCCUCUCGCGCCGCACGCUCUG	chr5:130500781-130501060(-)$1	279	64	104	13.0715
ACCGGACAAAGGCCACCGAGCGCGGGGGUGUCCCCGAGGU	chr3:49058432-49058684(-)$1	252	161	201	14.9604
GCACGUAGCUCAGCGGCGGCCGCGGCGCGUGCGUCUGUGC	chr22:24236493-24236857(+)$1	364	96	136	14.2905
ggcugagggugggggugcgagguggUCACUCCCAUCGUGC	chr19:7978321-7978579(+)$1	258	86	126	16.3241
GAAGCCCCGAggggcgcggcggccgguccccggggcuggg	chrX:109245771-109246068(+)$1	297	235	275	13.0408

#DB
.((....(((..(.(((...))).)..)))...)).))..	chr11:61583649-61583935(-)$1	1	109	149	12.9910
((((..(((((((((((((......)))))))))).))).	chr11:236933-237215(+)$1	1	20	60	14.9302
((..((((....((((((....))).)))...))))..))	chr8:124221218-124221484(+)$1	1	198	238	15.0459
(.(((.....(((((.((....)).)))))..))))))))	chr6:32157447-32157877(-)$1	1	282	322	12.1979
((((...(.(((((((((....))))...))))).)...)	chr10:103874431-103874695(-)$1	1	201	241	12.1407
..(((.((((((.(((((.....)).))).))).))).))	chr7:50860927-50861228(-)$1	1	147	187	14.2222
(((((((((((((((.(.....).)))))))))...))))	chr7:1577315-1577608(+)$1	1	115	155	14.5396
(((((.(((.((..((......))..))))).))))))))	chr11:554461-554755(+)$1	1	40	80	13.6572
.(((((((((((((.((......)).))....))))))))	chr1:2125400-2125682(-)$1	1	158	198	14.6294
(((((....(((.((.(....).)).)))...))))).))	chr11:63742040-63742313(+)$1	1	186	226	12.2440
(((((.(.(((.((.(((.....))).)).))).).))))	chr8:1772078-1772426(+)$1	1	177	217	14.1074
..((((..((((((((((....)))....)))))))..))	chr7:100273356-100273604(+)$1	1	183	223	14.0194
(((..(((((..((((((....)))...)))..))...))	chr7:22862255-22862561(-)$1	1	138	178	14.4954
(((.((((...((((((.....))).)))..))))...))	chr16:83841505-83841826(+)$1	1	267	307	14.0504
.(((.((.(..(.(((((...))))).)..).)).)))..	chr1:54871820-54872061(-)$1	1	17	57	12.0439
((((((((((((((.((((......)))).).))))))))	chr2:27294366-27294597(-)$1	1	152	192	14.9771
(.(((.(.(((((((((.....))))))))))))).).))	chr22:20105265-20105523(+)$1	1	20	60	13.7880
(((((((((.(((((((.(.....).))))))).))))))	chr17:76793997-76794250(-)$1	1	99	139	14.5267
(((((((((...(((((......)))))...)))))))))	chr14:50359732-50359973(+)$1	1	30	70	16.5779
)).))(((((..(..(((....)))..))))))(((((((	chr20:57582066-57582331(-)$1	1	140	180	12.3194
..(((((((.(.((((.(....).))))...).)))))))	chr16:85646596-85646866(+)$1	1	224	264	12.4750
((.(((((...((..(((...)))...)).))))).))))	chr6:3259118-3259396(+)$1	1	209	249	13.9899
.((((...(.(((.(.((...)).).))).)....)))).	chr5:141488282-141488530(+)$1	1	136	176	13.7845
((((..(((.((((.((......))))))..)))...)))	chr2:27249713-27249979(+)$1	1	100	140	13.2262
(((.(.((((..(.(((.....))).).))))...).)))	chr17:76120140-76120391(-)$1	1	39	79	14.3735
((((.((((...((((((....)).).))).))))..)))	chr22:19710379-19710611(+)$1	1	88	128	12.2589
((.(((.....(((.(((....))).)))..))).))...	chr2:97535500-97535818(-)$1	1	29	69	14.2100
((((.((((.(((((.........))))).)...))).))	chr8:125551304-125551577(+)$1	1	205	245	12.5020
(((((((.((((((((......)))..))))).)))))))	chr12:56633891-56634157(-)$1	1	49	89	14.5005
.(((...((((((((((.....))))))))))...)))))	chr19:50168359-50168646(-)$1	1	107	147	15.2452
.(((.((.(((.(((.(((...))).))).))).)).)))	chr22:46505735-46506026(+)$1	1	238	278	14.7516
(((.(((((....((((......))))...))))).))))	chr8:101963101-101963366(-)$1	1	190	230	12.3755
.(((..(((((((.(.((....))).)))))))...)).)	chr2:178077421-178077628(+)$1	1	138	178	13.2592
((((..(((((((.((((....))))...)))))))..))	chr11:118926684-118926964(-)$1	1	112	152	12.8681
.(((((((.(.(((.(((....))))))..).)))))))(	chr17:76122910-76123195(-)$1	1	143	183	14.2706
((((..(((.(..((......))..).))).)))))))))	chr8:30670117-30670389(-)$1	1	198	238	13.7292
(((((((....(((.((((...)))))))....)))))))	chr5:177631461-177631706(+)$1	1	86	126	16.3222
((((..(((...(((((.((((((((((...)))))))))	chr5:154320671-154320915(+)$1	1	131	171	13.3655
.(((..(((.((.((((((......)))...))).)).))	chr16:1495790-1496031(-)$1	1	63	103	14.7531
(.(((.((.(((((..(((...))).))))).))))).))	chr3:10362627-10362887(-)$1	1	82	122	12.6879
(((...(((.(((..(((....)))..))))))..)))..	chr15:34393760-34394115(-)$1	1	143	183	15.2142
..(((((((.((((((((.....)))....))))).))))	chr9:131832944-131833212(+)$1	1	75	115	13.6964
(((((.(((.((((((((......))))).))).))))))	chr17:46656338-46656615(-)$1	1	48	88	12.5883
((((..(((.(.((((((....))).))).).))).))))	chr10:88854837-88855112(+)$1	1	90	130	17.6831
((((.((.((((((.(((....))).))).))).))..))	chr19:50168527-50168748(-)$1	1	130	170	13.8904
(((((((...(((.(..(....)..).)))..)))...))	chr8:30669816-30670089(-)$1	1	40	80	14.0235
)(((.((((((((((((.....))).)))))))))...))	chr19:1881743-1882014(-)$1	1	144	184	15.6363
(.(((.(((.(..((((((...))).)))..)))).))).	chr16:1921912-1922181(-)$1	1	74	114	16.3140
(((.((((..(((.((((....)))).)))))))..))).	chr19:1853511-1853750(-)$1	1	122	162	12.1628
(((((((((.(((.((((...)))))))...)))).))))	chr5:112312414-112312740(+)$1	1	46	86	11.8330
(((((((.(.(.((((((.....)))))).).).))))))	chr19:1009912-1010208(-)$1	1	210	250	14.2932
(..((((...((((.(((....))).))))....))))..	chr10:23003160-23003417(-)$1	1	96	136	12.9276
..((.((((.(..((((((...))).)))..).)))).))	chr7:26240179-26240460(-)$1	1	92	132	14.1843
((((((((....(((.........)))....)))))))))	chr12:110719426-110719711(+)$1	1	94	134	14.6102
(((((((((......(((......)))...))))))))).	chr19:39109744-39110034(+)$1	1	173	213	12.8769
((((..(((...((.((((......)))).))..))).))	chr5:130500781-130501060(-)$1	1	64	104	13.0715
(((((((....(((.(((....))).)))))))....)))	chr3:49058432-49058684(-)$1	1	161	201	14.9604
(((((..((...(((.((....)).)))..))...)))))	chr22:24236493-24236857(+)$1	1	96	136	14.2905
((...(.(((((((((((......).)))))))))).)..	chr19:7978321-7978579(+)$1	1	86	126	16.3241
..(((((((.(((((.(((...)))))))))))))))..)	chrX:109245771-109246068(+)$1	1	235	275	13.0408

#PSSM
i : 0.15	g : 0.11	d : 0.11	e : 0.09	= : 0.09	[ : 0.08	c : 0.08	" : 0.06	: : 0.05	! : 0.05	f : 0.03	b : 0.03	a : 0.01	
c : 0.15	i : 0.13	d : 0.13	g : 0.11	= : 0.11	[ : 0.06	e : 0.06	! : 0.06	b : 0.05	f : 0.03	" : 0.03	: : 0.01	a : 0.01	
c : 0.23	g : 0.15	d : 0.13	i : 0.11	= : 0.11	b : 0.06	e : 0.06	! : 0.03	[ : 0.03	f : 0.01	] : 0.01	" : 0.01	
c : 0.19	g : 0.15	d : 0.15	= : 0.11	i : 0.09	e : 0.06	[ : 0.06	b : 0.05	! : 0.03	" : 0.03	# : 0.01	f : 0.01	
! : 0.16	d : 0.13	c : 0.11	g : 0.11	= : 0.11	[ : 0.11	" : 0.06	e : 0.06	i : 0.05	# : 0.01	b : 0.01	a : 0.01	
! : 0.16	d : 0.15	[ : 0.13	= : 0.11	g : 0.08	" : 0.06	c : 0.06	b : 0.05	e : 0.05	i : 0.05	# : 0.03	$ : 0.01	a : 0.01	
c : 0.24	d : 0.15	= : 0.11	g : 0.09	i : 0.06	b : 0.06	" : 0.05	e : 0.05	# : 0.03	$ : 0.03	a : 0.03	! : 0.03	[ : 0.01	
c : 0.24	d : 0.11	[ : 0.11	= : 0.09	g : 0.09	i : 0.06	# : 0.05	e : 0.05	" : 0.05	$ : 0.03	b : 0.03	a : 0.01	! : 0.01	
c : 0.26	= : 0.09	g : 0.09	# : 0.08	i : 0.06	" : 0.06	a : 0.06	d : 0.06	[ : 0.05	e : 0.05	$ : 0.03	b : 0.03	! : 0.01	
[ : 0.28	" : 0.15	c : 0.09	= : 0.08	# : 0.08	e : 0.06	i : 0.05	g : 0.05	$ : 0.03	! : 0.03	b : 0.01	d : 0.01	a : 0.01	% : 0.01	
c : 0.18	e : 0.11	" : 0.11	a : 0.09	! : 0.08	= : 0.08	# : 0.08	g : 0.06	i : 0.05	b : 0.03	d : 0.03	$ : 0.01	[ : 0.01	% : 0.01	
c : 0.23	! : 0.11	e : 0.11	= : 0.08	[ : 0.08	" : 0.08	g : 0.06	# : 0.05	i : 0.05	b : 0.05	d : 0.03	a : 0.01	% : 0.01	
c : 0.33	e : 0.13	= : 0.06	[ : 0.06	! : 0.06	b : 0.06	g : 0.06	a : 0.05	i : 0.05	d : 0.05	# : 0.01	f : 0.01	% : 0.01	
c : 0.31	e : 0.15	[ : 0.13	b : 0.08	! : 0.06	d : 0.06	= : 0.05	i : 0.05	g : 0.03	a : 0.01	f : 0.01	% : 0.01	
c : 0.28	[ : 0.18	e : 0.11	d : 0.09	! : 0.06	= : 0.05	b : 0.05	a : 0.05	i : 0.03	g : 0.03	f : 0.01	% : 0.01	
c : 0.39	d : 0.15	[ : 0.13	b : 0.06	= : 0.05	e : 0.05	r : 0.03	! : 0.03	i : 0.01	g : 0.01	a : 0.01	o : 0.01	f : 0.01	
c : 0.41	b : 0.15	d : 0.13	= : 0.05	o : 0.05	e : 0.05	a : 0.03	r : 0.03	i : 0.01	g : 0.01	[ : 0.01	! : 0.01	f : 0.01	
c : 0.35	d : 0.11	o : 0.11	b : 0.09	n : 0.09	a : 0.05	e : 0.03	[ : 0.03	r : 0.03	l : 0.01	= : 0.01	m : 0.01	f : 0.01	
m : 0.35	n : 0.16	o : 0.16	c : 0.09	l : 0.08	d : 0.05	= : 0.03	r : 0.03	a : 0.01	
m : 0.35	o : 0.23	l : 0.18	n : 0.18	r : 0.03	= : 0.01	
m : 0.35	o : 0.23	n : 0.18	l : 0.16	r : 0.03	c : 0.01	= : 0.01	
m : 0.33	o : 0.21	n : 0.18	l : 0.09	c : 0.03	b : 0.03	r : 0.03	a : 0.01	e : 0.01	= : 0.01	d : 0.01	
c : 0.36	o : 0.18	b : 0.11	d : 0.08	n : 0.08	a : 0.05	r : 0.03	= : 0.03	] : 0.01	e : 0.01	i : 0.01	
c : 0.38	b : 0.15	o : 0.11	d : 0.09	] : 0.06	e : 0.03	r : 0.03	= : 0.03	2 : 0.03	i : 0.01	n : 0.01	f : 0.01	
c : 0.39	d : 0.11	a : 0.08	o : 0.06	b : 0.06	e : 0.06	] : 0.05	2 : 0.05	i : 0.03	= : 0.03	3 : 0.01	f : 0.01	
] : 0.33	d : 0.15	c : 0.13	e : 0.09	2 : 0.08	= : 0.05	a : 0.05	i : 0.03	3 : 0.03	4 : 0.01	f : 0.01	
c : 0.31	e : 0.09	] : 0.09	d : 0.09	2 : 0.06	= : 0.06	3 : 0.06	i : 0.05	b : 0.03	4 : 0.03	g : 0.03	a : 0.01	f : 0.01	
c : 0.38	e : 0.11	3 : 0.08	d : 0.08	= : 0.06	b : 0.06	i : 0.05	4 : 0.05	a : 0.03	g : 0.03	] : 0.01	f : 0.01	
c : 0.35	3 : 0.13	e : 0.11	d : 0.08	4 : 0.06	= : 0.05	i : 0.05	2 : 0.05	b : 0.03	g : 0.03	l : 0.01	f : 0.01	
] : 0.19	c : 0.13	3 : 0.13	2 : 0.13	e : 0.09	4 : 0.06	g : 0.06	= : 0.05	i : 0.05	d : 0.05	l : 0.01	
c : 0.13	3 : 0.11	2 : 0.11	e : 0.11	a : 0.11	g : 0.08	i : 0.06	4 : 0.06	= : 0.05	d : 0.05	] : 0.03	b : 0.03	l : 0.01	
c : 0.15	] : 0.11	e : 0.09	d : 0.09	= : 0.08	i : 0.08	g : 0.08	3 : 0.06	4 : 0.06	a : 0.06	2 : 0.05	b : 0.03	
c : 0.23	= : 0.09	d : 0.09	e : 0.09	i : 0.09	g : 0.09	3 : 0.08	] : 0.05	4 : 0.05	2 : 0.03	b : 0.03	a : 0.01	
= : 0.13	c : 0.13	] : 0.11	d : 0.09	3 : 0.09	g : 0.09	e : 0.08	i : 0.08	b : 0.06	4 : 0.05	2 : 0.03	
= : 0.16	c : 0.16	d : 0.09	3 : 0.09	g : 0.09	i : 0.08	b : 0.06	] : 0.06	e : 0.06	4 : 0.03	2 : 0.03	a : 0.01	
] : 0.16	= : 0.15	c : 0.13	3 : 0.11	g : 0.11	i : 0.08	d : 0.06	b : 0.06	a : 0.03	2 : 0.03	e : 0.01	4 : 0.01	
c : 0.18	g : 0.13	= : 0.13	i : 0.11	3 : 0.09	2 : 0.08	b : 0.06	d : 0.06	] : 0.05	e : 0.03	a : 0.01	4 : 0.01	
c : 0.13	i : 0.13	] : 0.13	= : 0.13	g : 0.11	2 : 0.08	3 : 0.08	d : 0.06	e : 0.05	b : 0.03	4 : 0.01	a : 0.01	
c : 0.16	i : 0.15	g : 0.13	= : 0.13	d : 0.11	e : 0.08	3 : 0.05	2 : 0.05	f : 0.03	b : 0.03	4 : 0.03	] : 0.01	
i : 0.13	= : 0.13	c : 0.11	g : 0.11	d : 0.09	e : 0.08	2 : 0.08	f : 0.06	b : 0.05	3 : 0.03	4 : 0.03	6 : 0.01	a : 0.01	] : 0.01	

#score	836.0769737536662
#seq	60
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_UTR_m2_run2.txt

#BEAR
:ffffffwwwwwwwwwwwwwwffffff	chr7:97481363-97481592(-)$1	229	157	184	18.5719
eeeeeeeettttttttttteeeee]ee	chr9:140137939-140138242(+)$1	303	196	223	21.6845
#bb[ddddtttttttttttdddd]bbf	chr14:69847059-69847330(-)$1	271	203	230	20.5174
"dddd[cccssssssssssccc]dddd	chr19:44111533-44111822(-)$1	289	207	234	16.9485
hhhhh[awwwwwwwwwwwwwwa]hhhh	chr5:180670753-180671002(-)$1	249	134	161	19.8461
iiiiiiiitttttttttttiiiiiiii	chr10:73576062-73576307(-)$1	245	169	196	22.2209
!!bb[ccctttttttttttccc]bb22	chr19:46190663-46190958(-)$1	295	124	151	21.7360
gggggggvvvvvvvvvvvvvggggggg	chr16:88876057-88876305(-)$1	248	30	57	21.3553
:eeeeevvvvvvvvvvvvveeeee:HH	chr16:227306-227531(+)$1	225	87	114	17.1385
:ffffffwwwwwwwwwwwwwwffffff	chr7:97481392-97481639(-)$1	247	204	231	18.5719
!!ccc!!attttttttttta22cccdd	chr20:2442301-2442542(-)$1	241	187	214	21.9384
ddd!!ccctttttttttttccc22ddd	chr11:67353925-67354207(+)$1	282	167	194	21.8911
[dddd[bbuuuuuuuuuuuubb]dddd	chr7:75933409-75933660(+)$1	251	61	88	21.1978
e"""dddduuuuuuuuuuuudddd22e	chr11:8704241-8704464(+)$1	223	190	217	21.4446
ebb!!cccyyyyyyyyyyyyyyyyccc	chr11:63743841-63744091(+)$1	250	154	181	18.5230
hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr2:44115504-44115799(-)$1	295	132	159	20.2692
gggddddwwwwwwwwwwwwwwdddd]g	chr6:8079828-8080068(-)$1	240	157	184	20.4137
!gggggggssssssssssgggggggee	chr9:19380098-19380330(-)$1	232	82	109	16.4612
eeddddbbtttttttttttbb]dddd>	chr19:18499666-18499931(+)$1	265	182	209	20.6672
eefffffftttttttttttffffffgg	chr14:102547552-102547827(-)$1	275	119	146	20.8641
hhhhhhhhttttttttttthhhhhhhh	chr14:102547680-102547936(-)$1	256	228	255	19.9243
ee!!dddduuuuuuuuuuuuddddeee	chr16:56643140-56643397(+)$1	257	52	79	21.8647
#eeeeewwwwwwwwwwwwwweeeee44	chr5:149829162-149829400(-)$1	238	24	51	20.4285
dddyyyyyyyyyyyyyyyydddd333d	chr2:98264436-98264681(+)$1	245	133	160	17.6521
eee[eeeeesssssssssseeeeeeee	chr5:159855550-159855833(+)$1	283	76	103	16.5058
fff!!ccctttttttttttccc]ffff	chr1:154248172-154248419(+)$1	247	213	240	22.1334
!dddd[cccssssssssssccc]dddd	chr9:139745231-139745501(+)$1	270	214	241	17.0589
d"""eeeeesssssssssseeeeeddd	chrX:154006897-154007193(-)$1	296	252	279	16.1791
b"""eeeeesssssssssseeeee333	chr2:176042879-176043131(-)$1	252	23	50	16.3543
::cccvvvvvvvvvvvvvcccccc[cc	chr16:223497-223731(+)$1	234	0	27	16.7102
eeeee[awwwwwwwwwwwwwwa]eeee	chr11:57509590-57509821(+)$1	231	64	91	20.7833
ddd[bbwwwwwwwwwwwwwwbb]dddd	chr8:30669846-30670092(-)$1	246	45	72	19.3184
[ccc!!bbssssssssssbb22ccc]c	chr19:39926454-39926687(-)$1	233	119	146	15.7703
!gggggggtttttttttttggggggg2	chr19:8387055-8387275(+)$1	220	185	212	22.2259
eee:ddddvvvvvvvvvvvvvdddd::	chr7:56169257-56169498(-)$1	241	138	165	17.6270
hhhhhhhhttttttttttthhhhhhhh	chr19:42364227-42364460(+)$1	233	30	57	19.9243
::eeeeewwwwwwwwwwwwwweeeee:	chr6:31606755-31607003(-)$1	248	1	28	17.7669
fff:ddddyyyyyyyyyyyyyyyyddd	chr19:40953615-40953895(-)$1	280	17	44	17.0275
iiiiiiiissssssssssiiiiiiiii	chr7:123182020-123182262(-)$1	242	124	151	16.3601
hhcccwwwwwwwwwwwwwwccc]hhhh	chr11:62284060-62284273(-)$1	213	120	147	19.3431
ccc!!cccwwwwwwwwwwwwwwccc22	chr6:31698285-31698537(-)$1	252	67	94	20.4078
:ffffffvvvvvvvvvvvvvffffff:	chr2:97541828-97542071(-)$1	243	2	29	18.1928
gggg[cccsssssssssscccgggggg	chr10:74035230-74035516(+)$1	286	192	219	17.3408
d[fffffftttttttttttffffff]d	chr6:31694791-31695084(-)$1	293	77	104	20.8761
i[a!!ccctttttttttttccc22a]i	chr19:18499849-18500074(+)$1	225	189	216	22.4313
deeeeewwwwwwwwwwwwwweeeee33	chr6:133135770-133135977(+)$1	207	81	108	20.5848
ccc[dddduuuuuuuuuuuudddd]cc	chrX:19377755-19378032(+)$1	277	69	96	21.9130
ddddd[cccssssssssssccc]dddd	chr9:139745301-139745556(+)$1	255	144	171	16.8441
3ccccccuuuuuuuuuuuuccca[fff	chr7:75695728-75696006(+)$1	278	145	172	21.3519
c!!eeeeeuuuuuuuuuuuueeeee22	chr19:42375316-42375547(+)$1	231	34	61	22.0463
fffeeeeeuuuuuuuuuuuueeeee::	chr8:11696008-11696249(+)$1	241	51	78	19.9199
eeeeddddtttttttttttdddd>>>>	chr6:133135610-133135853(+)$1	243	46	73	20.5906
iiiiiiiitttttttttttiiiiiiii	chr15:44063589-44063825(+)$1	236	10	37	22.2209
iiiiiiiitttttttttttiiiiiiii	chr10:73576107-73576341(-)$1	234	203	230	22.2209
eeee[bbuuuuuuuuuuuubb22eeee	chr2:176042833-176043077(-)$1	244	30	57	20.6078
fffbb[a[assssssssssa]a]bb22	chr11:9466843-9467089(+)$1	246	176	203	16.0803
####eeeeesssssssssseeeee22b	chr12:54058874-54059141(-)$1	267	87	114	15.8463
ccc[ddddtttttttttttdddd]ccc	chr16:56643216-56643470(+)$1	254	207	234	21.7200
:ggggggguuuuuuuuuuuuggggggg	chr16:204289-204594(+)$1	305	70	97	21.5563

#otherMatches

#Seq PSSM
UGCUGUAGUCAUUUAUGUUCAUGCAGU	chr7:97481363-97481592(-)$1	229	157	184	18.5719
CACCAUUAAAGCAUUUUCAUAGUGUGU	chr9:140137939-140138242(+)$1	303	196	223	21.6845
UAUUAGAUGAAAUGUGAGGAUCUUGUU	chr14:69847059-69847330(-)$1	271	203	230	20.5174
AUCUGUAUCUGUGUGUGUUGGUUCAGA	chr19:44111533-44111822(-)$1	289	207	234	16.9485
GUGCUAGUUUCUCUAAGCCAUCCAGUG	chr5:180670753-180671002(-)$1	249	134	161	19.8461
AUGAAGUUGCUAUUAAAUGGACUUCGU	chr10:73576062-73576307(-)$1	245	169	196	22.2209
AACCCGCUCAUCGCCGGCAAGUAGGGG	chr19:46190663-46190958(-)$1	295	124	151	21.7360
CUGGGGACCUCACCCUCCCAUCCCCAG	chr16:88876057-88876305(-)$1	248	30	57	21.3553
CCUCCAAAUACCGUUAAGCUGGAGCCU	chr16:227306-227531(+)$1	225	87	114	17.1385
UGCUGUAGUCAUUUAUGUUCAUGCAGU	chr7:97481392-97481639(-)$1	247	204	231	18.5719
GUACAUAGUCCUUUUAUCUCCUUGUGG	chr20:2442301-2442542(-)$1	241	187	214	21.9384
CUCCAGGACCAAUAAAAUUUCUAAGAG	chr11:67353925-67354207(+)$1	282	167	194	21.8911
AUGAGACUGCCGCCAAGUAAAGCCUUA	chr7:75933409-75933660(+)$1	251	61	88	21.1978
CUAGUCAUCCACUCCCUACCAUGGUCG	chr11:8704241-8704464(+)$1	223	190	217	21.4446
UAAAAUCUAUUUAAACUUUACUUCAGA	chr11:63743841-63744091(+)$1	250	154	181	18.5230
GAGGGAAAAAUAAAUGAAAAUUUUCUU	chr2:44115504-44115799(-)$1	295	132	159	20.2692
AAGUUGAGAUCCAGUUAUAAAUUAACC	chr6:8079828-8080068(-)$1	240	157	184	20.4137
AGCGGAAGUUGGCCCUCUUUUCCGUGG	chr9:19380098-19380330(-)$1	232	82	109	16.4612
AAACAGCUGUAUUUAUAUAAGUCUGUU	chr19:18499666-18499931(+)$1	265	182	209	20.6672
UUCUGAGCUGUAUCUUGAUGUUUAGAA	chr14:102547552-102547827(-)$1	275	119	146	20.8641
UUCUGAGCUGUAUCUUGAUGUUUAGAA	chr14:102547680-102547936(-)$1	256	228	255	19.9243
CUGUGGGCUGUGCCAAGUGUGCCCAGG	chr16:56643140-56643397(+)$1	257	52	79	21.8647
GACCUCGCCCCGUGACCUCAGAGGUAU	chr5:149829162-149829400(-)$1	238	24	51	20.4285
GAGCACCUGCACUAAAUUACUCAAAAU	chr2:98264436-98264681(+)$1	245	133	160	17.6521
CAAGCAUUCUGUCGACCCUGGAUGUUG	chr5:159855550-159855833(+)$1	283	76	103	16.5058
UUCUAGAACCAUCCAACACUUCCGAAA	chr1:154248172-154248419(+)$1	247	213	240	22.1334
CUGGCCACAGAAUUAAACGUGUUGCCA	chr9:139745231-139745501(+)$1	270	214	241	17.0589
GUUUCCACACAAAAAGAAAUGUGGCCC	chrX:154006897-154007193(-)$1	296	252	279	16.1791
CUGUUCUCAUAUGCUAUCCUGGGAUUU	chr2:176042879-176043131(-)$1	252	23	50	16.3543
CUGGCCGCCCACCUCCCCGCCGAGUUC	chr16:223497-223731(+)$1	234	0	27	16.7102
AGGUGGUGGAAGAGUUGAAGAAGUACC	chr11:57509590-57509821(+)$1	231	64	91	20.7833
gcggcggagggagaggggagcggcgcc	chr8:30669846-30670092(-)$1	246	45	72	19.3184
CGCGGUGAGGUUGUCUAGUCCACGCUC	chr19:39926454-39926687(-)$1	233	119	146	15.7703
GAGAUGCUCCUUUAAAUAAAGCGUUUG	chr19:8387055-8387275(+)$1	220	185	212	22.2259
GACUGGGCAAAUGUUUGUGUGGCCUCC	chr7:56169257-56169498(-)$1	241	138	165	17.6270
CUCGCGAGCUUUCGGAACUCUCGCGAG	chr19:42364227-42364460(+)$1	233	30	57	19.9243
UCCGGUCUGAUAUACAAAAACGACUGC	chr6:31606755-31607003(-)$1	248	1	28	17.7669
ACCUGGGCCAUUUCAUGCUGCGCUGCC	chr19:40953615-40953895(-)$1	280	17	44	17.0275
GAUGUAAUUAAAUAUUCUGUUAUAUUA	chr7:123182020-123182262(-)$1	242	124	151	16.3601
UUCCUAUAUAAACUCCAAAGGGAAACA	chr11:62284060-62284273(-)$1	213	120	147	19.3431
GAUGAGGGAAAGAAAUGGGGGGCCUGG	chr6:31698285-31698537(-)$1	252	67	94	20.4078
AGCCUGCUUUUCUCCUCGCCGCAGGCC	chr2:97541828-97542071(-)$1	243	2	29	18.1928
UUUGUAUCUUGUUUUUCUGAUCGGAGC	chr10:74035230-74035516(+)$1	286	192	219	17.3408
GGCCUUGGGGUACUGCUGGCCAGGGGU	chr6:31694791-31695084(-)$1	293	77	104	20.8761
CUGACCUCAGUUUCUCUAGGAGACCUG	chr19:18499849-18500074(+)$1	225	189	216	22.4313
CAAUGCUUUUGUUUUUUAGUGCGUUCA	chr6:133135770-133135977(+)$1	207	81	108	20.5848
ACUUGGUUAAGGAGGAAGAAAACCCAG	chrX:19377755-19378032(+)$1	277	69	96	21.9130
CUGGCCACAGAAUUAAACGUGUUGCCA	chr9:139745301-139745556(+)$1	255	144	171	16.8441
UGUGGGCGCAUCAAUAAAAGCCGUCCU	chr7:75695728-75696006(+)$1	278	145	172	21.3519
UAGCUGUUACAAAGUGCCCCAGCAGAG	chr19:42375316-42375547(+)$1	231	34	61	22.0463
AGUACCUGACCACUCUCUCCCAGGUAA	chr8:11696008-11696249(+)$1	241	51	78	19.9199
GCACAGGGGACCUGAAAAACCCUUAAA	chr6:133135610-133135853(+)$1	243	46	73	20.5906
CAGGACCAGUUUAUGUUUGUGGUUUUG	chr15:44063589-44063825(+)$1	236	10	37	22.2209
AUGAAGUUGCUAUUAAAUGGACUUCGU	chr10:73576107-73576341(-)$1	234	203	230	22.2209
UGGUUGCUUUCUUGAUUUUGUUUGCCA	chr2:176042833-176043077(-)$1	244	30	57	20.6078
ACACUGUGGAAAUCUGAAACGAGGGGA	chr11:9466843-9467089(+)$1	246	176	203	16.0803
CCCCGUGUGUUCCUUUUCCUAUACCUC	chr12:54058874-54059141(-)$1	267	87	114	15.8463
UCCUUUAUAUGCCUUAAAAAUAACGGA	chr16:56643216-56643470(+)$1	254	207	234	21.7200
AUCGGUCGUAUCCUCUGUCCUGACCGA	chr16:204289-204594(+)$1	305	70	97	21.5563

#DB
.((((((..............))))))	chr7:97481363-97481592(-)$1	1	157	184	18.5719
((((((((...........))))).))	chr9:140137939-140138242(+)$1	1	196	223	21.6845
.((.((((...........)))).)))	chr14:69847059-69847330(-)$1	1	203	230	20.5174
.((((.(((..........))).))))	chr19:44111533-44111822(-)$1	1	207	234	16.9485
(((((.(..............).))))	chr5:180670753-180671002(-)$1	1	134	161	19.8461
((((((((...........))))))))	chr10:73576062-73576307(-)$1	1	169	196	22.2209
..((.(((...........))).))..	chr19:46190663-46190958(-)$1	1	124	151	21.7360
(((((((.............)))))))	chr16:88876057-88876305(-)$1	1	30	57	21.3553
.(((((.............))))).))	chr16:227306-227531(+)$1	1	87	114	17.1385
.((((((..............))))))	chr7:97481392-97481639(-)$1	1	204	231	18.5719
..(((..(...........)..)))))	chr20:2442301-2442542(-)$1	1	187	214	21.9384
(((..(((...........)))..)))	chr11:67353925-67354207(+)$1	1	167	194	21.8911
.((((.((............)).))))	chr7:75933409-75933660(+)$1	1	61	88	21.1978
(...((((............))))..)	chr11:8704241-8704464(+)$1	1	190	217	21.4446
(((..(((................)))	chr11:63743841-63744091(+)$1	1	154	181	18.5230
((((((((............)))))))	chr2:44115504-44115799(-)$1	1	132	159	20.2692
(((((((..............)))).)	chr6:8079828-8080068(-)$1	1	157	184	20.4137
.(((((((..........)))))))))	chr9:19380098-19380330(-)$1	1	82	109	16.4612
((((((((...........)).)))).	chr19:18499666-18499931(+)$1	1	182	209	20.6672
))((((((...........))))))((	chr14:102547552-102547827(-)$1	1	119	146	20.8641
((((((((...........))))))))	chr14:102547680-102547936(-)$1	1	228	255	19.9243
((..((((............)))))))	chr16:56643140-56643397(+)$1	1	52	79	21.8647
.(((((..............)))))..	chr5:149829162-149829400(-)$1	1	24	51	20.4285
(((................))))...)	chr2:98264436-98264681(+)$1	1	133	160	17.6521
(((.(((((..........))))))))	chr5:159855550-159855833(+)$1	1	76	103	16.5058
(((..(((...........))).))))	chr1:154248172-154248419(+)$1	1	213	240	22.1334
.((((.(((..........))).))))	chr9:139745231-139745501(+)$1	1	214	241	17.0589
(...(((((..........))))))))	chrX:154006897-154007193(-)$1	1	252	279	16.1791
(...(((((..........)))))...	chr2:176042879-176043131(-)$1	1	23	50	16.3543
..(((.............)))(((.((	chr16:223497-223731(+)$1	1	0	27	16.7102
(((((.(..............).))))	chr11:57509590-57509821(+)$1	1	64	91	20.7833
(((.((..............)).))))	chr8:30669846-30670092(-)$1	1	45	72	19.3184
.(((..((..........))..))).)	chr19:39926454-39926687(-)$1	1	119	146	15.7703
.(((((((...........))))))).	chr19:8387055-8387275(+)$1	1	185	212	22.2259
))).((((.............))))..	chr7:56169257-56169498(-)$1	1	138	165	17.6270
((((((((...........))))))))	chr19:42364227-42364460(+)$1	1	30	57	19.9243
..(((((..............))))).	chr6:31606755-31607003(-)$1	1	1	28	17.7669
))).((((................)))	chr19:40953615-40953895(-)$1	1	17	44	17.0275
((((((((..........)))))))))	chr7:123182020-123182262(-)$1	1	124	151	16.3601
(((((..............))).))))	chr11:62284060-62284273(-)$1	1	120	147	19.3431
(((..(((..............)))..	chr6:31698285-31698537(-)$1	1	67	94	20.4078
.((((((.............)))))).	chr2:97541828-97542071(-)$1	1	2	29	18.1928
((((.(((..........)))))))))	chr10:74035230-74035516(+)$1	1	192	219	17.3408
(.((((((...........)))))).)	chr6:31694791-31695084(-)$1	1	77	104	20.8761
(.(..(((...........)))..).)	chr19:18499849-18500074(+)$1	1	189	216	22.4313
((((((..............)))))..	chr6:133135770-133135977(+)$1	1	81	108	20.5848
(((.((((............)))).))	chrX:19377755-19378032(+)$1	1	69	96	21.9130
(((((.(((..........))).))))	chr9:139745301-139745556(+)$1	1	144	171	16.8441
.)))(((............)))(.(((	chr7:75695728-75696006(+)$1	1	145	172	21.3519
(..(((((............)))))..	chr19:42375316-42375547(+)$1	1	34	61	22.0463
)))(((((............)))))..	chr8:11696008-11696249(+)$1	1	51	78	19.9199
((((((((...........))))....	chr6:133135610-133135853(+)$1	1	46	73	20.5906
((((((((...........))))))))	chr15:44063589-44063825(+)$1	1	10	37	22.2209
((((((((...........))))))))	chr10:73576107-73576341(-)$1	1	203	230	22.2209
((((.((............))..))))	chr2:176042833-176043077(-)$1	1	30	57	20.6078
(((((.(.(..........).).))..	chr11:9466843-9467089(+)$1	1	176	203	16.0803
....(((((..........)))))..)	chr12:54058874-54059141(-)$1	1	87	114	15.8463
(((.((((...........)))).)))	chr16:56643216-56643470(+)$1	1	207	234	21.7200
.(((((((............)))))))	chr16:204289-204594(+)$1	1	70	97	21.5563

#PSSM
e : 0.18	: : 0.11	d : 0.11	h : 0.08	i : 0.08	! : 0.08	f : 0.06	c : 0.06	# : 0.05	g : 0.05	[ : 0.03	" : 0.01	b : 0.01	3 : 0.01	
e : 0.20	f : 0.11	d : 0.11	g : 0.10	h : 0.08	c : 0.08	i : 0.06	! : 0.05	" : 0.05	b : 0.03	: : 0.03	[ : 0.03	# : 0.01	
e : 0.16	f : 0.15	d : 0.13	c : 0.13	g : 0.10	h : 0.06	i : 0.06	b : 0.05	" : 0.05	! : 0.03	a : 0.01	# : 0.01	
e : 0.16	d : 0.10	! : 0.10	f : 0.08	[ : 0.08	g : 0.08	c : 0.08	h : 0.06	i : 0.06	" : 0.05	b : 0.03	: : 0.03	y : 0.01	# : 0.01	
d : 0.23	e : 0.20	! : 0.10	f : 0.08	h : 0.06	i : 0.06	g : 0.06	c : 0.06	[ : 0.05	b : 0.03	y : 0.01	
e : 0.18	d : 0.16	c : 0.13	[ : 0.11	f : 0.08	i : 0.06	g : 0.06	h : 0.05	! : 0.03	b : 0.03	y : 0.01	v : 0.01	w : 0.01	
c : 0.18	d : 0.15	e : 0.13	f : 0.08	i : 0.06	g : 0.06	b : 0.06	w : 0.06	a : 0.05	h : 0.05	v : 0.03	! : 0.01	y : 0.01	
w : 0.16	c : 0.16	d : 0.13	e : 0.11	i : 0.06	v : 0.06	b : 0.05	h : 0.05	g : 0.05	f : 0.03	u : 0.03	a : 0.01	y : 0.01	[ : 0.01	
t : 0.30	w : 0.18	u : 0.16	v : 0.08	s : 0.06	e : 0.06	c : 0.05	y : 0.05	a : 0.01	
t : 0.30	s : 0.20	w : 0.18	u : 0.16	v : 0.08	y : 0.05	
t : 0.30	s : 0.20	w : 0.18	u : 0.16	v : 0.08	y : 0.05	
t : 0.30	s : 0.20	w : 0.18	u : 0.16	v : 0.08	y : 0.05	
t : 0.30	s : 0.20	w : 0.18	u : 0.16	v : 0.08	y : 0.05	
t : 0.30	s : 0.20	w : 0.18	u : 0.16	v : 0.08	y : 0.05	
t : 0.30	s : 0.20	w : 0.18	u : 0.16	v : 0.08	y : 0.05	
t : 0.30	s : 0.20	w : 0.18	u : 0.16	v : 0.08	y : 0.05	
t : 0.30	s : 0.20	w : 0.18	u : 0.16	v : 0.08	y : 0.05	
t : 0.30	s : 0.20	w : 0.18	u : 0.16	v : 0.08	y : 0.05	
t : 0.30	w : 0.18	u : 0.16	s : 0.13	v : 0.06	y : 0.05	c : 0.03	g : 0.01	b : 0.01	i : 0.01	
c : 0.18	w : 0.16	u : 0.13	e : 0.10	d : 0.06	i : 0.06	v : 0.05	b : 0.05	a : 0.03	y : 0.03	g : 0.03	f : 0.03	h : 0.03	
c : 0.18	e : 0.16	w : 0.11	d : 0.11	i : 0.06	g : 0.06	b : 0.06	h : 0.05	f : 0.05	2 : 0.03	y : 0.03	v : 0.01	] : 0.01	
e : 0.18	c : 0.16	d : 0.15	f : 0.08	g : 0.08	i : 0.06	a : 0.05	2 : 0.05	h : 0.05	b : 0.03	y : 0.03	] : 0.01	w : 0.01	
e : 0.18	] : 0.18	d : 0.16	f : 0.08	g : 0.08	i : 0.06	c : 0.06	2 : 0.05	h : 0.05	y : 0.03	a : 0.01	
e : 0.22	d : 0.18	f : 0.10	h : 0.08	g : 0.08	i : 0.06	c : 0.06	] : 0.03	b : 0.03	2 : 0.03	y : 0.03	3 : 0.01	[ : 0.01	> : 0.01	
d : 0.18	e : 0.15	f : 0.11	h : 0.08	g : 0.08	c : 0.08	i : 0.06	b : 0.05	] : 0.03	2 : 0.03	3 : 0.03	: : 0.01	[ : 0.01	a : 0.01	> : 0.01	
d : 0.16	e : 0.11	2 : 0.10	f : 0.08	h : 0.08	g : 0.08	i : 0.06	c : 0.06	] : 0.06	3 : 0.05	: : 0.03	b : 0.01	H : 0.01	4 : 0.01	> : 0.01	
d : 0.18	e : 0.11	f : 0.08	h : 0.08	i : 0.08	2 : 0.08	g : 0.08	c : 0.08	: : 0.06	> : 0.03	3 : 0.03	H : 0.01	4 : 0.01	b : 0.01	

#score	1155.97430091337
#seq	59
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_CDS_m1_run1.txt

#BEAR
ffffffvvvvvvvvvvvvvffff	chr6:56401614-56401836(-)$1	222	59	82	22.2852
:eeeeeuuuuuuuuuuuueeeee	chr19:8531025-8531325(+)$1	300	275	298	22.3841
======wwwwwwwwwwwwww===	chrX:53571998-53572218(-)$1	220	57	80	22.0399
fbb[bbvvvvvvvvvvvvvbbbb	chr6:145021169-145021401(+)$1	232	139	162	20.9407
!!ddddvvvvvvvvvvvvvdddd	chr14:95582853-95583133(-)$1	280	222	245	22.9351
::dddduuuuuuuuuuuudddd:	chr14:102482217-102482471(+)$1	254	3	26	20.2706
"cccyyyyyyyyyyyyyyyyccc	chr16:2807689-2808029(+)$1	340	48	71	20.7441
hhhhhhuuuuuuuuuuuuhhhhh	chr1:171519238-171519475(+)$1	237	180	203	20.8681
ffffffuuuuuuuuuuuufffff	chr1:21191065-21191306(-)$1	241	86	109	22.5240
!!dddduuuuuuuuuuuuddddf	chr14:32615368-32615624(+)$1	256	19	42	23.2863
ffffffuuuuuuuuuuuufffff	chr6:144795664-144795886(+)$1	222	171	194	22.5240
eddddvvvvvvvvvvvvvdddd]	chrX:53588655-53588915(-)$1	260	22	45	22.1150
eee[bbwwwwwwwwwwwwwwbb2	chr1:146756979-146757265(+)$1	286	255	278	21.1305
fffffftttttttttttffffff	chr2:100013180-100013415(+)$1	235	178	201	20.6800
eeeeeyyyyyyyyyyyyyyyyee	chr19:57325179-57325409(-)$1	230	96	119	21.2011
ffffffvvvvvvvvvvvvvffff	chr6:7577091-7577295(+)$1	204	169	192	22.2852
gggggguuuuuuuuuuuuggggg	chr11:120278347-120278619(+)$1	272	30	53	23.0602
cc!!bbwwwwwwwwwwwwwwbb2	chr12:26755202-26755459(-)$1	257	16	39	20.9500
ffeeeeettttttttttteeeee	chr8:48748853-48749144(-)$1	291	143	166	21.5506
[ccc[bbtttttttttttbb]cc	chr5:5463452-5463756(+)$1	304	262	285	20.8173
#eeeeettttttttttteeeeec	chr8:103289177-103289475(-)$1	298	198	221	21.4833
[ddddvvvvvvvvvvvvvdddd]	chr8:100108498-100108759(+)$1	261	21	44	22.3518
FFdddduuuuuuuuuuuudddd:	chr12:49434646-49434919(-)$1	273	34	57	21.4606
[eeeeexxxxxxxxxxxxxxxee	chr12:26834826-26835063(-)$1	237	200	223	18.5651
b[dddduuuuuuuuuuuudddd]	chr2:170493558-170493836(+)$1	278	235	258	23.0252
d[ddddtttttttttttdddd33	chr9:131371300-131371540(+)$1	240	144	167	21.1098
ccbbwwwwwwwwwwwwwwbb]cc	chr16:89348150-89348436(-)$1	286	96	119	19.8912
h[ddddyyyyyyyyyyyyyyyyd	chr12:26639117-26639375(-)$1	258	44	67	20.6654
dd!!bbvvvvvvvvvvvvvbb22	chr2:232325092-232325326(-)$1	234	86	109	21.2898
gg[cccuuuuuuuuuuuucccgg	chr19:57325791-57326044(-)$1	253	55	78	23.3267
ffffffuuuuuuuuuuuufffff	chr2:109380781-109381042(+)$1	261	33	56	22.5240
eeeeevvvvvvvvvvvvveeeee	chr9:79935983-79936292(+)$1	309	62	85	22.3586
eeee[avvvvvvvvvvvvva]ee	chr14:23549525-23549850(-)$1	325	204	227	22.9170
eeeeeyyyyyyyyyyyyyyyyee	chr1:62941459-62941709(-)$1	250	165	188	21.2011
###cccuuuuuuuuuuuuccc33	chr19:57326624-57326877(-)$1	253	101	124	22.9749
hhhhhhvvvvvvvvvvvvvhhhh	chr14:31585384-31585602(-)$1	218	34	57	20.8568
fff[ccctttttttttttccc]f	chr11:120331280-120331545(+)$1	265	96	119	21.6538
!eeeeevvvvvvvvvvvvveeee	chr8:48744328-48744572(-)$1	244	61	84	23.1582
eeeeevvvvvvvvvvvvveeeee	chr2:73678608-73678907(+)$1	299	169	192	22.3586
:eeeeeuuuuuuuuuuuueeeee	chr6:144772488-144772726(+)$1	238	113	136	22.3841
[bb[ccctttttttttttccc]b	chr10:64952604-64952866(-)$1	262	71	94	21.1187
::dddduuuuuuuuuuuudddd:	chr2:71360211-71360507(+)$1	296	64	87	20.2706
ffffffuuuuuuuuuuuufffff	chr12:6702180-6702414(-)$1	234	5	28	22.5240
[eeeeeuuuuuuuuuuuueeeee	chr2:48026098-48026376(+)$1	278	13	36	23.4814
""dddduuuuuuuuuuuudddd]	chr14:71570157-71570450(+)$1	293	61	84	23.1820
hhhhhhyyyyyyyyyyyyyyyyh	chr9:107562737-107562962(-)$1	225	38	61	19.5655
::ddddvvvvvvvvvvvvvdddd	chr14:103447028-103447291(-)$1	263	78	101	20.8298
eeddddyyyyyyyyyyyyyyyyd	chr15:62214799-62215050(-)$1	251	47	70	20.7796
::dddduuuuuuuuuuuudddd:	chrX:41073749-41074031(+)$1	282	112	135	20.2706
f[ddddwwwwwwwwwwwwwwddd	chr1:70715600-70715834(+)$1	234	194	217	22.0505
ggggggwwwwwwwwwwwwwwggg	chr3:184024434-184024670(+)$1	236	44	67	22.1105
ffffffuuuuuuuuuuuufffff	chr8:144943794-144944054(-)$1	260	78	101	22.5240
ffffffwwwwwwwwwwwwwwfff	chr9:131370432-131370652(+)$1	220	29	52	21.6308
eee[bbwwwwwwwwwwwwwwbb]	chr12:112939893-112940161(+)$1	268	169	192	21.3517
!dddd[atttttttttttadddd	chr1:19426782-19427007(-)$1	225	159	182	22.1871
ffffffuuuuuuuuuuuufffff	chr6:56323893-56324162(-)$1	269	84	107	22.5240
beeeeeuuuuuuuuuuuueeeee	chr1:39926279-39926537(+)$1	258	84	107	23.0662
ggggggwwwwwwwwwwwwwwggg	chr12:57005579-57005899(-)$1	320	48	71	22.1105
gggggguuuuuuuuuuuuggggg	chr21:38570111-38570397(+)$1	286	181	204	23.0602
#ddddyyyyyyyyyyyyyyyydd	chr14:103440344-103440582(-)$1	238	28	51	20.8972
ffffffvvvvvvvvvvvvvffff	chr20:40045833-40046089(-)$1	256	215	238	22.2852
!!ddddvvvvvvvvvvvvvdddd	chr11:118373678-118373912(+)$1	234	170	193	22.9351
gggggggtttttttttttggggg	chr1:39895426-39895722(+)$1	296	14	37	21.2697
[cccwwwwwwwwwwwwwwccc22	chrX:153581925-153582167(-)$1	242	185	208	20.9258
hhhhhhuuuuuuuuuuuuhhhhh	chr12:57000314-57000567(-)$1	253	178	201	20.8681
geeeeewwwwwwwwwwwwwweee	chr2:63272462-63272727(+)$1	265	83	106	22.3240
iiiiwwwwwwwwwwwwwwiiiii	chr11:120318503-120318715(+)$1	212	129	152	20.9754
[eeeeeuuuuuuuuuuuueeeee	chr1:19443661-19443889(-)$1	228	53	76	23.4814
eeddddyyyyyyyyyyyyyyyyd	chr6:7584874-7585137(+)$1	263	30	53	20.7796
####ccctttttttttttccc44	chr11:118352360-118352743(+)$1	383	74	97	21.2009

#otherMatches

#Seq PSSM
GUAAUAUAACUCAUAUAAUUAUU	chr6:56401614-56401836(-)$1	222	59	82	22.2852
AACAGUUUGACCUAAAUUGCUGU	chr19:8531025-8531325(+)$1	300	275	298	22.3841
GGAGUCUCUGAACACUUGCUGAC	chrX:53571998-53572218(-)$1	220	57	80	22.0399
AAGAGCUUAAGAAACAAAUGCCU	chr6:145021169-145021401(+)$1	232	139	162	20.9407
GAUCCUAUGUUCAAUCUAAAGGA	chr14:95582853-95583133(-)$1	280	222	245	22.9351
AACCGUACUUCACGUCCAACGGC	chr14:102482217-102482471(+)$1	254	3	26	20.2706
UGUCCUUUAUAUUUCCUUCAGAC	chr16:2807689-2808029(+)$1	340	48	71	20.7441
UUGUUGCCCAAAGUGUAUCAGCA	chr1:171519238-171519475(+)$1	237	180	203	20.8681
CUCCUUACACAACAGCCAGAGGA	chr1:21191065-21191306(-)$1	241	86	109	22.5240
auuacaaacaugagccacugugc	chr14:32615368-32615624(+)$1	256	19	42	23.2863
ACUUGGGUGCAGACAAGACUAGG	chr6:144795664-144795886(+)$1	222	171	194	22.5240
CCCUUAAGGAGGAUGAUGAAGGU	chrX:53588655-53588915(-)$1	260	22	45	22.1150
AAUAUCACUUUAAAAAUACAGAA	chr1:146756979-146757265(+)$1	286	255	278	21.1305
AAUGUAAGUUCUAGUUGUACAUU	chr2:100013180-100013415(+)$1	235	178	201	20.6800
GGUAGAAGAACCAUACUAUGACU	chr19:57325179-57325409(-)$1	230	96	119	21.2011
GCCAAUUCAAUUAAGGUAUGUUG	chr6:7577091-7577295(+)$1	204	169	192	22.2852
UAGAAUUUUAAAUUUUUUAUUCU	chr11:120278347-120278619(+)$1	272	30	53	23.0602
CUCUUCCUUUUAAAGAUUUUGAU	chr12:26755202-26755459(-)$1	257	16	39	20.9500
CAGACCCGUACCCAGGAAGGGUC	chr8:48748853-48749144(-)$1	291	143	166	21.5506
ACUGGACAAUCAUCAGUGGUGUA	chr5:5463452-5463756(+)$1	304	262	285	20.8173
UGCUGCACAAUUAAAAAGUAGCU	chr8:103289177-103289475(-)$1	298	198	221	21.4833
UUUCUUUAAAAUAAAAAUAGGAU	chr8:100108498-100108759(+)$1	261	21	44	22.3518
CAGGGGAAUUCCACACUACCCCA	chr12:49434646-49434919(-)$1	273	34	57	21.4606
ACUAGCGACCACAGUUAAAAAGC	chr12:26834826-26835063(-)$1	237	200	223	18.5651
AACAGCAGGGAAAAAAAGGCUGA	chr2:170493558-170493836(+)$1	278	235	258	23.0252
UAGGAGAAUCUCAAACCCUCCAA	chr9:131371300-131371540(+)$1	240	144	167	21.1098
GUGCAGAGAAAGAAAAGGGCGAC	chr16:89348150-89348436(-)$1	286	96	119	19.8912
AUUGGUUCAGAAAUAUAAAAGUA	chr12:26639117-26639375(-)$1	258	44	67	20.6654
GAAAUGGCCAAACAGAAAGCAGC	chr2:232325092-232325326(-)$1	234	86	109	21.2898
GAAGUCAGACCGAAGAGAGACUC	chr19:57325791-57326044(-)$1	253	55	78	23.3267
GAGUUGCCAAAACCAGAACAACU	chr2:109380781-109381042(+)$1	261	33	56	22.5240
UAGAAUUUUUCCUUAUAUUUCUA	chr9:79935983-79936292(+)$1	309	62	85	22.3586
GAGAAGGAAAUGAAAACAACAUC	chr14:23549525-23549850(-)$1	325	204	227	22.9170
UCGACAAAAAUUACAAUCUUCGU	chr1:62941459-62941709(-)$1	250	165	188	21.2011
CCUACUGACCCUCAAACAAGUUA	chr19:57326624-57326877(-)$1	253	101	124	22.9749
AAGUUGAAUUACCACUCACCAAU	chr14:31585384-31585602(-)$1	218	34	57	20.8568
UUAGUUGGAUUGAAUGAACAAAU	chr11:120331280-120331545(+)$1	265	96	119	21.6538
ACUGGGCCUGCUUUCCCUCUCCA	chr8:48744328-48744572(-)$1	244	61	84	23.1582
CUCUAGUUUAUACUCAUAUAGAG	chr2:73678608-73678907(+)$1	299	169	192	22.3586
CACUUCCGAAAUGAAAAAGAAGU	chr6:144772488-144772726(+)$1	238	113	136	22.3841
UGUAGGCACAGAUAACAAGUUAA	chr10:64952604-64952866(-)$1	262	71	94	21.1187
AGGAACGUGAAGAGGAUGGUUCA	chr2:71360211-71360507(+)$1	296	64	87	20.2706
UGCCUUCAUGUGCAGAAAGAGGC	chr12:6702180-6702414(-)$1	234	5	28	22.5240
AUCAGAAACCAAGAAUACUUUGA	chr2:48026098-48026376(+)$1	278	13	36	23.4814
CCUGAGAAACAUGAUAAACUCAU	chr14:71570157-71570450(+)$1	293	61	84	23.1820
ACUGUUGCCCCUUAUCUAUGUGA	chr9:107562737-107562962(-)$1	225	38	61	19.5655
AUUGGGAAAAUAUACGAAACCUA	chr14:103447028-103447291(-)$1	263	78	101	20.8298
AAAGAAUUUAUUAUAAAUAUUUU	chr15:62214799-62215050(-)$1	251	47	70	20.7796
UUAGAAAUCACCAAAAUCUUCUU	chrX:41073749-41074031(+)$1	282	112	135	20.2706
UCCUGUAGUUUUUCUUUUCAGCA	chr1:70715600-70715834(+)$1	234	194	217	22.0505
CAAGGGUGACUGUUUUUUAUUCC	chr3:184024434-184024670(+)$1	236	44	67	22.1105
GCUCCUGCCACUUCACCGAGGAG	chr8:144943794-144944054(-)$1	260	78	101	22.5240
CUUCUUGAAUACCGAAGACAAAG	chr9:131370432-131370652(+)$1	220	29	52	21.6308
AAGUAGUGCUGAAGGAAAUUCUU	chr12:112939893-112940161(+)$1	268	169	192	21.3517
UGCCCACGUUUACGAUUAGGGGC	chr1:19426782-19427007(-)$1	225	159	182	22.1871
CUUCUUUCCUCAGAUUCCAAGAA	chr6:56323893-56324162(-)$1	269	84	107	22.5240
AAUCACAAAAAGUCUCGAGUGAU	chr1:39926279-39926537(+)$1	258	84	107	23.0662
GUUUCUCCAGCAGCCUCCCCAGA	chr12:57005579-57005899(-)$1	320	48	71	22.1105
GGGGCAGAAAGCAGAAGAUGUCC	chr21:38570111-38570397(+)$1	286	181	204	23.0602
AGCUAACAUAAAGUUUACAUAUA	chr14:103440344-103440582(-)$1	238	28	51	20.8972
GGAGAAAACUCUCUAUUCCUUCU	chr20:40045833-40046089(-)$1	256	215	238	22.2852
AUCCAUUAUCAACGAACAUAUGG	chr11:118373678-118373912(+)$1	234	170	193	22.9351
AGAGACUCCUCAUUCCUAGGUCU	chr1:39895426-39895722(+)$1	296	14	37	21.2697
AUUCUAGUCAAGUACAAUGAACA	chrX:153581925-153582167(-)$1	242	185	208	20.9258
UAGGUUAAUUUUUCCUACAACUU	chr12:57000314-57000567(-)$1	253	178	201	20.8681
GCCGAAGAAGAAGAUGAGCAUUU	chr2:63272462-63272727(+)$1	265	83	106	22.3240
UUUCCCCUAGAAUUUUAAGAAAA	chr11:120318503-120318715(+)$1	212	129	152	20.9754
AGUCACACCAUCAGCAAAGUGAC	chr1:19443661-19443889(-)$1	228	53	76	23.4814
CCCAGAAACCAAUAAAGAAAUGU	chr6:7584874-7585137(+)$1	263	30	53	20.7796
AAAAAGAAAGAGAAAAAGUCUAA	chr11:118352360-118352743(+)$1	383	74	97	21.2009

#DB
((((((.............))))	chr6:56401614-56401836(-)$1	1	59	82	22.2852
.(((((............)))))	chr19:8531025-8531325(+)$1	1	275	298	22.3841
((((((..............)))	chrX:53571998-53572218(-)$1	1	57	80	22.0399
)((.((.............))))	chr6:145021169-145021401(+)$1	1	139	162	20.9407
..((((.............))))	chr14:95582853-95583133(-)$1	1	222	245	22.9351
..((((............)))).	chr14:102482217-102482471(+)$1	1	3	26	20.2706
.(((................)))	chr16:2807689-2808029(+)$1	1	48	71	20.7441
((((((............)))))	chr1:171519238-171519475(+)$1	1	180	203	20.8681
((((((............)))))	chr1:21191065-21191306(-)$1	1	86	109	22.5240
..((((............)))))	chr14:32615368-32615624(+)$1	1	19	42	23.2863
((((((............)))))	chr6:144795664-144795886(+)$1	1	171	194	22.5240
(((((.............)))).	chrX:53588655-53588915(-)$1	1	22	45	22.1150
(((.((..............)).	chr1:146756979-146757265(+)$1	1	255	278	21.1305
((((((...........))))))	chr2:100013180-100013415(+)$1	1	178	201	20.6800
(((((................))	chr19:57325179-57325409(-)$1	1	96	119	21.2011
((((((.............))))	chr6:7577091-7577295(+)$1	1	169	192	22.2852
((((((............)))))	chr11:120278347-120278619(+)$1	1	30	53	23.0602
((..((..............)).	chr12:26755202-26755459(-)$1	1	16	39	20.9500
))(((((...........)))))	chr8:48748853-48749144(-)$1	1	143	166	21.5506
.(((.((...........)).))	chr5:5463452-5463756(+)$1	1	262	285	20.8173
.(((((...........))))))	chr8:103289177-103289475(-)$1	1	198	221	21.4833
.((((.............)))).	chr8:100108498-100108759(+)$1	1	21	44	22.3518
((((((............)))).	chr12:49434646-49434919(-)$1	1	34	57	21.4606
.(((((...............))	chr12:26834826-26835063(-)$1	1	200	223	18.5651
(.((((............)))).	chr2:170493558-170493836(+)$1	1	235	258	23.0252
(.((((...........))))..	chr9:131371300-131371540(+)$1	1	144	167	21.1098
((((..............)).))	chr16:89348150-89348436(-)$1	1	96	119	19.8912
(.((((................)	chr12:26639117-26639375(-)$1	1	44	67	20.6654
((..((.............))..	chr2:232325092-232325326(-)$1	1	86	109	21.2898
((.(((............)))))	chr19:57325791-57326044(-)$1	1	55	78	23.3267
((((((............)))))	chr2:109380781-109381042(+)$1	1	33	56	22.5240
(((((.............)))))	chr9:79935983-79936292(+)$1	1	62	85	22.3586
((((.(.............).))	chr14:23549525-23549850(-)$1	1	204	227	22.9170
(((((................))	chr1:62941459-62941709(-)$1	1	165	188	21.2011
...(((............)))..	chr19:57326624-57326877(-)$1	1	101	124	22.9749
((((((.............))))	chr14:31585384-31585602(-)$1	1	34	57	20.8568
(((.(((...........))).)	chr11:120331280-120331545(+)$1	1	96	119	21.6538
.(((((.............))))	chr8:48744328-48744572(-)$1	1	61	84	23.1582
(((((.............)))))	chr2:73678608-73678907(+)$1	1	169	192	22.3586
.(((((............)))))	chr6:144772488-144772726(+)$1	1	113	136	22.3841
.((.(((...........))).)	chr10:64952604-64952866(-)$1	1	71	94	21.1187
..((((............)))).	chr2:71360211-71360507(+)$1	1	64	87	20.2706
((((((............)))))	chr12:6702180-6702414(-)$1	1	5	28	22.5240
.(((((............)))))	chr2:48026098-48026376(+)$1	1	13	36	23.4814
..((((............)))).	chr14:71570157-71570450(+)$1	1	61	84	23.1820
((((((................)	chr9:107562737-107562962(-)$1	1	38	61	19.5655
..((((.............))))	chr14:103447028-103447291(-)$1	1	78	101	20.8298
))((((................)	chr15:62214799-62215050(-)$1	1	47	70	20.7796
..((((............)))).	chrX:41073749-41074031(+)$1	1	112	135	20.2706
(.((((..............)))	chr1:70715600-70715834(+)$1	1	194	217	22.0505
((((((..............)))	chr3:184024434-184024670(+)$1	1	44	67	22.1105
((((((............)))))	chr8:144943794-144944054(-)$1	1	78	101	22.5240
((((((..............)))	chr9:131370432-131370652(+)$1	1	29	52	21.6308
(((.((..............)).	chr12:112939893-112940161(+)$1	1	169	192	21.3517
.((((.(...........)))))	chr1:19426782-19427007(-)$1	1	159	182	22.1871
((((((............)))))	chr6:56323893-56324162(-)$1	1	84	107	22.5240
((((((............)))))	chr1:39926279-39926537(+)$1	1	84	107	23.0662
((((((..............)))	chr12:57005579-57005899(-)$1	1	48	71	22.1105
((((((............)))))	chr21:38570111-38570397(+)$1	1	181	204	23.0602
.((((................))	chr14:103440344-103440582(-)$1	1	28	51	20.8972
((((((.............))))	chr20:40045833-40046089(-)$1	1	215	238	22.2852
..((((.............))))	chr11:118373678-118373912(+)$1	1	170	193	22.9351
(((((((...........)))))	chr1:39895426-39895722(+)$1	1	14	37	21.2697
.(((..............)))..	chrX:153581925-153582167(-)$1	1	185	208	20.9258
((((((............)))))	chr12:57000314-57000567(-)$1	1	178	201	20.8681
((((((..............)))	chr2:63272462-63272727(+)$1	1	83	106	22.3240
((((..............)))))	chr11:120318503-120318715(+)$1	1	129	152	20.9754
.(((((............)))))	chr1:19443661-19443889(-)$1	1	53	76	23.4814
))((((................)	chr6:7584874-7585137(+)$1	1	30	53	20.7796
....(((...........)))..	chr11:118352360-118352743(+)$1	1	74	97	21.2009

#PSSM
f : 0.21	e : 0.14	g : 0.10	[ : 0.10	: : 0.08	! : 0.07	h : 0.07	# : 0.05	" : 0.02	c : 0.02	b : 0.02	d : 0.02	= : 0.01	F : 0.01	i : 0.01	
e : 0.25	f : 0.18	g : 0.08	c : 0.07	d : 0.07	: : 0.05	h : 0.05	[ : 0.05	! : 0.04	b : 0.02	# : 0.02	= : 0.01	F : 0.01	" : 0.01	i : 0.01	
d : 0.27	e : 0.24	f : 0.17	g : 0.07	h : 0.05	b : 0.04	c : 0.04	! : 0.02	# : 0.02	= : 0.01	[ : 0.01	i : 0.01	
d : 0.27	e : 0.21	f : 0.15	[ : 0.07	c : 0.07	g : 0.07	h : 0.05	! : 0.02	= : 0.01	b : 0.01	i : 0.01	# : 0.01	
d : 0.27	e : 0.20	f : 0.15	b : 0.07	g : 0.07	c : 0.07	h : 0.05	w : 0.04	[ : 0.02	= : 0.01	y : 0.01	
d : 0.21	f : 0.15	e : 0.14	b : 0.08	g : 0.07	c : 0.07	y : 0.05	h : 0.05	v : 0.05	w : 0.04	= : 0.01	a : 0.01	[ : 0.01	
u : 0.34	v : 0.21	w : 0.17	y : 0.11	t : 0.04	c : 0.04	e : 0.01	b : 0.01	x : 0.01	a : 0.01	g : 0.01	
u : 0.34	v : 0.21	w : 0.17	t : 0.14	y : 0.11	x : 0.01	
u : 0.34	v : 0.21	w : 0.17	t : 0.14	y : 0.11	x : 0.01	
u : 0.34	v : 0.21	w : 0.17	t : 0.14	y : 0.11	x : 0.01	
u : 0.34	v : 0.21	w : 0.17	t : 0.14	y : 0.11	x : 0.01	
u : 0.34	v : 0.21	w : 0.17	t : 0.14	y : 0.11	x : 0.01	
u : 0.34	v : 0.21	w : 0.17	t : 0.14	y : 0.11	x : 0.01	
u : 0.34	v : 0.21	w : 0.17	t : 0.14	y : 0.11	x : 0.01	
u : 0.34	v : 0.21	w : 0.17	t : 0.14	y : 0.11	x : 0.01	
u : 0.34	v : 0.21	w : 0.17	t : 0.14	y : 0.11	x : 0.01	
u : 0.34	v : 0.21	w : 0.17	t : 0.14	y : 0.11	x : 0.01	
u : 0.34	v : 0.21	w : 0.17	y : 0.11	t : 0.10	f : 0.01	e : 0.01	x : 0.01	d : 0.01	
v : 0.15	d : 0.14	e : 0.12	w : 0.12	y : 0.11	f : 0.10	c : 0.08	g : 0.04	h : 0.02	b : 0.02	x : 0.01	a : 0.01	i : 0.01	
d : 0.20	f : 0.14	e : 0.14	w : 0.12	y : 0.11	c : 0.08	b : 0.05	h : 0.04	g : 0.04	x : 0.01	a : 0.01	i : 0.01	
d : 0.21	f : 0.15	e : 0.15	c : 0.10	y : 0.10	b : 0.07	g : 0.07	h : 0.04	] : 0.04	= : 0.01	x : 0.01	i : 0.01	
e : 0.21	d : 0.21	f : 0.15	g : 0.08	b : 0.05	y : 0.05	c : 0.04	h : 0.04	3 : 0.02	2 : 0.02	] : 0.02	= : 0.01	i : 0.01	4 : 0.01	
e : 0.20	f : 0.18	d : 0.12	g : 0.08	] : 0.07	: : 0.05	c : 0.05	h : 0.05	2 : 0.05	b : 0.02	3 : 0.02	= : 0.01	i : 0.01	4 : 0.01	

#score	1522.7312338731738
#seq	70
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_transcript_m2_run2.txt

#BEAR
iiiccc!!ccc[ddddbbqqqqqqqqbb]dddd333cccc	chr12:132402722-132403012(+)$1	290	174	214	18.0314
fbbgggggggcccxxxxxxxxxxxxxxxccc22ggggggg	chr17:76798003-76798288(-)$1	285	192	232	12.1221
eeeee####iiiiiiiiiqqqqqqqqiiiiiiiii4444e	chr16:30935317-30935596(+)$1	279	12	52	18.3500
gg[dddd[a[gggggggarrrrrrrrra]ggggggg]add	chr12:113826986-113827275(+)$1	289	129	169	14.0328
ggggggg!!dddd!!cccqqqqqqqqccc333ddddgggg	chr16:30662165-30662432(+)$1	267	198	238	19.2849
==========:gggggggqqqqqqqqgggggggffffff!	chr16:85678685-85678960(+)$1	275	110	150	17.0826
ggg!!ccc"""ddddcccqqqqqqqqccc]dddd333ccc	chr16:23994246-23994486(+)$1	240	122	162	19.2358
####hhhhhhhh[eeeeeqqqqqqqqeeeee]hhhhhhhh	chr20:60735353-60735646(+)$1	293	100	140	15.3025
ffff[ggggggg"""cccqqqqqqqqccc22ggggggg]f	chr19:40783317-40783587(-)$1	270	15	55	19.0615
ddd####dddd"""ddddqqqqqqqqdddddddd333ddd	chr22:38169833-38170155(+)$1	322	180	220	18.4455
e[ccc[eeeee[a"""bbqqqqqqqqbb333a]eeeee]c	chr11:66025149-66025438(+)$1	289	131	171	17.2490
cc!!ccc[ccc!!eeeeeqqqqqqqqeeeee22ccc]ccc	chr22:21212402-21212648(-)$1	246	132	172	19.5686
=======[a####bbwwwwwwwwwwwwwwbb22a]=====	chr17:1465627-1465889(-)$1	262	67	107	15.8753
===[dddd[abb[eeeeeqqqqqqqqeeeee]bb333a]d	chr19:41270029-41270315(+)$1	286	114	154	17.9921
ccc[ccc[dddd[ddddqqqqqqqqdddd]dddd]ccccc	chr1:28176882-28177186(+)$1	304	249	289	16.4367
C:::ggggggg[a[ddddqqqqqqqqdddd]a]ggggggg	chr10:72463721-72463996(+)$1	275	12	52	15.0193
dd[a[cccdddd[ddddssssssssssdddd]dddd]ccc	chr16:2209466-2209729(+)$1	263	117	157	13.8499
::dddd"""bb"""cccrrrrrrrrrccc333bb333ddd	chr11:2018871-2019098(-)$1	227	2	42	13.3402
ffffbb[===========qqqqqqqq===========]bb	chr19:4052722-4053021(-)$1	299	53	93	17.7939
:bb[ffffffbb"""cccqqqqqqqqccc]bb]ffffff]	chr16:85665405-85665676(+)$1	271	7	47	15.9075
ggggggcccffffff!!aqqqqqqqqa22ffffff4444c	chr22:47523946-47524233(+)$1	287	32	72	16.7481
eeee"""dddd[dddd[aqqqqqqqqa]dddddddd333e	chr11:65192496-65192752(+)$1	256	121	161	17.9800
[bb"""a[ccc[eeeeesssssssssseeeee4444ccc]	chr17:37824559-37824807(+)$1	248	100	140	14.1646
dd[iiiiiiiiibb!!cccqqqqqqqqccc22bb4444ii	chr16:81698988-81699276(+)$1	288	134	174	17.4492
d[ccc[a[hhhhhhhh[aqqqqqqqqa]hhhhhhhh]a]c	chr19:53152051-53152350(-)$1	299	16	56	16.3758
i[a"""ffffff[eeeeeqqqqqqqqeeeee]ffffff]a	chr4:2935870-2936142(-)$1	272	104	144	17.5131
===[ccc[bb"""a[ddddoooooodddd]a22bb]ccc=	chr2:242447771-242448065(-)$1	294	160	200	12.0259
!!bb"""dddd[dddd[aqqqqqqqqa]dddd]dddd444	chr14:105626393-105626654(-)$1	261	179	219	17.6230
ee:dddd[bb[gggggggqqqqqqqqgggggggbb]dddd	chr19:47482212-47482523(+)$1	311	201	241	15.2817
bb!!ffffffbb!!ddddrrrrrrrrrdddd333bb]fff	chr16:58162754-58163005(-)$1	251	41	81	13.5942
========ccceeeee[aqqqqqqqqa]eeeee]ccc22=	chr7:150760258-150760496(+)$1	238	88	128	18.1738
ff####ggggggg!!cccqqqqqqqqccc333ggggggg4	chr16:68227723-68228000(+)$1	277	192	232	20.1072
===========!!ccc[bbrrrrrrrrrbb]ccc======	chr1:31357187-31357432(-)$1	245	175	215	14.0453
gg[eeeee"""bb"""bbqqqqqqqqbb4444bb]eeeee	chr21:46949000-46949250(-)$1	250	68	108	16.2509
gggg[bb[dddd!!ddddqqqqqqqqdddd22dddd]bbg	chr1:1000572-1000858(+)$1	286	158	198	18.1072
cc"""ccc[bb[a!!cccqqqqqqqqccc]a]bb]ccc22	chr12:111875911-111876198(+)$1	287	105	145	19.4327
dddd####ccc"""ddddqqqqqqqqdddd333ccc22dd	chr14:105249857-105250112(-)$1	255	176	216	19.3790
ffiiiiiiiii[a!!cccqqqqqqqqccc333a]iiiiii	chr22:50037564-50037870(-)$1	306	205	245	20.6431
dddd[bb[bb[gggggggqqqqqqqqggggggg]bb333b	chr22:50722989-50723254(-)$1	265	85	125	16.9682
""cccbb"""a!!ccctttttttttttccc22a]bb]ccc	chr1:27561126-27561401(+)$1	275	8	48	12.4079
fffff"""ffffff[cccqqqqqqqqccc]ffffffffff	chr17:80230597-80230874(-)$1	277	115	155	16.7565
d[ffffff!!a[cccddddqqqqqqqqdddd22cccafff	chr2:242706966-242707229(+)$1	263	213	253	16.1054
eeedddd[dddd!!ddddqqqqqqqqdddddddddddd55	chr16:31129224-31129490(+)$1	266	166	206	15.2126
cc!!eeeee####bbcccssssssssssccc]bb4444ee	chr16:88709810-88710133(-)$1	323	259	299	13.6043

#otherMatches

#Seq PSSM
UCUCCUGUUGGAGCAUUGGGAUAUAACAGGUGUAAACCGA	chr12:132402722-132403012(+)$1	290	174	214	18.0314
GGGAGGGUCUGGGAGAAGAUGUGGAGGGCCCUGGGACCCU	chr17:76798003-76798288(-)$1	285	192	232	12.1221
GGCCUGGCACUGGACCCCUGGGCAGUGGGGUCCGGGAAGG	chr16:30935317-30935596(+)$1	279	12	52	18.3500
GCCCCUCACCUCAGGGCCAUACCCACAGCGCCCUGAUGGA	chr12:113826986-113827275(+)$1	289	129	169	14.0328
CCCCUGUCUGAGCGGAGCUUUGCGGCGCUGAAGCUUACAG	chr16:30662165-30662432(+)$1	267	198	238	19.2849
CAUCUGGGGGUCUGGGGUUGGGUCACGCCUCAGGGGCAGC	chr16:85678685-85678960(+)$1	275	110	150	17.0826
GGUACCUGUUUGAAAGUAGGGUCUAGUACAUUUUUUUCAG	chr16:23994246-23994486(+)$1	240	122	162	19.2358
gggauggggagaggugggauggggGCCCUGCGUCUCCCUG	chr20:60735353-60735646(+)$1	293	100	140	15.3025
ugcagccagguaaaggccgcaaggaaggcgauaucuggau	chr19:40783317-40783587(-)$1	270	15	55	19.0615
GCAUAUCUGAGCGCGCCCCUCGCACUGGGUCUCACCUUGC	chr22:38169833-38170155(+)$1	322	180	220	18.4455
UGCGGGUCCGGGUGAAGCGGGAGGCAGCCAGAGUCGGAGC	chr11:66025149-66025438(+)$1	289	131	171	17.2490
gaugagccgaggaccaggggucaagaccugggguucugcu	chr22:21212402-21212648(-)$1	246	132	172	19.5686
CGGCCGUGCGGAAGCGGGGAGGAGGGAGGGUGGGGACGGC	chr17:1465627-1465889(-)$1	262	67	107	15.8753
gggaguuggagggugucugggagaagggauggcuacaugc	chr19:41270029-41270315(+)$1	286	114	154	17.9921
AAGACCUGUCUUCACAACACUUGCAUUGUAGAGAAAGGCU	chr1:28176882-28177186(+)$1	304	249	289	16.4367
CAGUGUGGGGAGAAGCAUUUCUAGGCGUGCCUGUCUCCAU	chr10:72463721-72463996(+)$1	275	12	52	15.0193
UGUGGGUGCCCUGGGCAGGCUCUGUGAUGCCAGGGGCCAC	chr16:2209466-2209729(+)$1	263	117	157	13.8499
AAGCCCGGGCUAGGACCGAGGAGCAGGGUGAGGGAGGGGG	chr11:2018871-2019098(-)$1	227	2	42	13.3402
uggugccaggccuguucuaggcgccggggacaGGCCUUGC	chr19:4052722-4053021(-)$1	299	53	93	17.7939
gguuguucagccagaagcauccagaagcugggucugagcc	chr16:85665405-85665676(+)$1	271	7	47	15.9075
UUUUCCCCAGCUCCUCACCUAUUUCAGCAGGGAGCCCCAU	chr22:47523946-47524233(+)$1	287	32	72	16.7481
AAGUGAGAAGUUGCUUAGAAACUUUCCAAAGUGCUUAGAA	chr11:65192496-65192752(+)$1	256	121	161	17.9800
GGCGGGGGUCGGGCGGUAGAAAAAAGGGCCGCGAGGCGAG	chr17:37824559-37824807(+)$1	248	100	140	14.1646
ggugguccuggugggagcuaaggagcaggcagccugaggc	chr16:81698988-81699276(+)$1	288	134	174	17.4492
UGUCUGGGUGGGUUCUGGACAGUGGGUGGGGACCCGGCGG	chr19:53152051-53152350(-)$1	299	16	56	16.3758
gggaucgggaucgggaucgggaucgggauccggguuCCCC	chr4:2935870-2936142(-)$1	272	104	144	17.5131
GGGCGCUGCAgagcgggccgggggaggccgggauggagcc	chr2:242447771-242448065(-)$1	294	160	200	12.0259
GACAGAGUCCUGGGGGGUGUGGAUGGAGCCCUGGGGGGGU	chr14:105626393-105626654(-)$1	261	179	219	17.6230
UCUUUGUUGGUGGAUCUUUAGCCUGUAAGAUCCCUCACAG	chr19:47482212-47482523(+)$1	311	201	241	15.2817
GCAAGCCUCUGCAAAUCUGGGACAAAAAGGUCGGGCUAGG	chr16:58162754-58163005(-)$1	251	41	81	13.5942
gggcuggggGAGCUCUCCUGGGGGCUGAAGGGCAUCCAUU	chr7:150760258-150760496(+)$1	238	88	128	18.1738
GGUAUAUGUGUAAACUAGAGCAACACCUAAAAUUGCAUAG	chr16:68227723-68228000(+)$1	277	192	232	20.1072
UCCUGCCCUCUGAGCUGCCUUUGUAGAUGGGAGUAGGGGG	chr1:31357187-31357432(-)$1	245	175	215	14.0453
UGGAUGUGCCCGGCCCUGUACUUCCCCAUCCUCCCCACAU	chr21:46949000-46949250(-)$1	250	68	108	16.2509
GCCCCUCAAGGCCACGAGGAUCAGUGCUCGGAGCCUGGAG	chr1:1000572-1000858(+)$1	286	158	198	18.1072
uugggggUGCUGGGGCUGGGGGUGGGCAGAUGAGGAUUGG	chr12:111875911-111876198(+)$1	287	105	145	19.4327
CUGGCGUGGCAACCUGGGGGUCUGUGCCCACUCUGUGUUU	chr14:105249857-105250112(-)$1	255	176	216	19.3790
GGGUUCCAUGGGUGGAGGGAGGUGAGCCUGAAGGCUGUGG	chr22:50037564-50037870(-)$1	306	205	245	20.6431
GGGCUGCAGGGGUUCUGGGAGGAGGGCCAGGGUGCCACAG	chr22:50722989-50723254(-)$1	265	85	125	16.9682
GGUCCCCAGACAGCUGGAGGAGAUAAACAGAGGAGGAGGA	chr1:27561126-27561401(+)$1	275	8	48	12.4079
ggggguagggcuggggccgcgaagcgggCGUCGGCUUCCU	chr17:80230597-80230874(-)$1	277	115	155	16.7565
GGCUGCCCUGGAGCCCCACGUGUACGAGUGGACGGCCGGG	chr2:242706966-242707229(+)$1	263	213	253	16.1054
GGGAGGCUGUUGACCUUGAAUUAUGCCGAGCGACGCCUAC	chr16:31129224-31129490(+)$1	266	166	206	15.2126
cccccggccgaggcccgcAAGAAGCCCAGCGAGGAGGAGG	chr16:88709810-88710133(-)$1	323	259	299	13.6043

#DB
((((((..(((.((((((........)).))))...))))	chr12:132402722-132403012(+)$1	1	174	214	18.0314
)((((((((((((...............)))..)))))))	chr17:76798003-76798288(-)$1	1	192	232	12.1221
(((((....(((((((((........)))))))))....)	chr16:30935317-30935596(+)$1	1	12	52	18.3500
((.((((.(.((((((((.........).))))))).)))	chr12:113826986-113827275(+)$1	1	129	169	14.0328
(((((((..((((..(((........)))...))))))))	chr16:30662165-30662432(+)$1	1	198	238	19.2849
)))))))))).(((((((........)))))))((((((.	chr16:85678685-85678960(+)$1	1	110	150	17.0826
(((..(((...(((((((........))).))))...)))	chr16:23994246-23994486(+)$1	1	122	162	19.2358
....((((((((.(((((........))))).))))))))	chr20:60735353-60735646(+)$1	1	100	140	15.3025
((((.(((((((...(((........)))..))))))).)	chr19:40783317-40783587(-)$1	1	15	55	19.0615
(((....((((...((((........))))))))...)))	chr22:38169833-38170155(+)$1	1	180	220	18.4455
(.(((.(((((.(...((........))...).))))).)	chr11:66025149-66025438(+)$1	1	131	171	17.2490
((..(((.(((..(((((........)))))..))).)))	chr22:21212402-21212648(-)$1	1	132	172	19.5686
(((((((.(....((..............))..).)))))	chr17:1465627-1465889(-)$1	1	67	107	15.8753
(((.((((.(((.(((((........))))).))...).)	chr19:41270029-41270315(+)$1	1	114	154	17.9921
(((.(((.((((.((((........)))).)))).)))))	chr1:28176882-28177186(+)$1	1	249	289	16.4367
(...(((((((.(.((((........)))).).)))))))	chr10:72463721-72463996(+)$1	1	12	52	15.0193
((.(.(((((((.((((..........)))).)))).)))	chr16:2209466-2209729(+)$1	1	117	157	13.8499
..((((...((...(((.........)))...))...)))	chr11:2018871-2019098(-)$1	1	2	42	13.3402
))))((.(((((((((((........))))))))))).))	chr19:4052722-4053021(-)$1	1	53	93	17.7939
.((.((((((((...(((........))).)).)))))).	chr16:85665405-85665676(+)$1	1	7	47	15.9075
(((((((((((((((..(........)..))))))....)	chr22:47523946-47524233(+)$1	1	32	72	16.7481
((((...((((.((((.(........).))))))))...)	chr11:65192496-65192752(+)$1	1	121	161	17.9800
.((...(.(((.(((((..........)))))....))).	chr17:37824559-37824807(+)$1	1	100	140	14.1646
((.(((((((((((..(((........)))..))....))	chr16:81698988-81699276(+)$1	1	134	174	17.4492
(.(((.(.((((((((.(........).)))))))).).)	chr19:53152051-53152350(-)$1	1	16	56	16.3758
(.(...((((((.(((((........))))).)))))).)	chr4:2935870-2936142(-)$1	1	104	144	17.5131
(((.(((.((...(.((((......)))).)..)).))))	chr2:242447771-242448065(-)$1	1	160	200	12.0259
..((...((((.((((.(........).)))).))))...	chr14:105626393-105626654(-)$1	1	179	219	17.6230
)).((((.((.(((((((........))))))))).))))	chr19:47482212-47482523(+)$1	1	201	241	15.2817
((..((((((((..((((.........))))...)).)))	chr16:58162754-58163005(-)$1	1	41	81	13.5942
((((((((((((((((.(........).))))).)))..)	chr7:150760258-150760496(+)$1	1	88	128	18.1738
((....(((((((..(((........)))...))))))).	chr16:68227723-68228000(+)$1	1	192	232	20.1072
(((((((((((..(((.((.........)).)))))))))	chr1:31357187-31357432(-)$1	1	175	215	14.0453
((.(((((...((...((........))....)).)))))	chr21:46949000-46949250(-)$1	1	68	108	16.2509
((((.((.((((..((((........))))..)))).)))	chr1:1000572-1000858(+)$1	1	158	198	18.1072
((...(((.((.(..(((........))).).)).)))..	chr12:111875911-111876198(+)$1	1	105	145	19.4327
((((....(((...((((........))))...)))..))	chr14:105249857-105250112(-)$1	1	176	216	19.3790
(((((((((((.(..(((........)))...).))))))	chr22:50037564-50037870(-)$1	1	205	245	20.6431
((((.((.((.(((((((........))))))).))...)	chr22:50722989-50723254(-)$1	1	85	125	16.9682
..(((((...(..(((...........)))..).)).)))	chr1:27561126-27561401(+)$1	1	8	48	12.4079
(((((...((((((.(((........))).))))))))))	chr17:80230597-80230874(-)$1	1	115	155	16.7565
(.((((((..(.(((((((........))))..)))))))	chr2:242706966-242707229(+)$1	1	213	253	16.1054
(((((((.((((..((((........))))))))))))..	chr16:31129224-31129490(+)$1	1	166	206	15.2126
((..(((((....(((((..........))).))....))	chr16:88709810-88710133(-)$1	1	259	299	13.6043

#PSSM
d : 0.15	f : 0.13	g : 0.13	= : 0.13	e : 0.11	c : 0.09	i : 0.04	: : 0.04	# : 0.02	C : 0.02	[ : 0.02	! : 0.02	b : 0.02	" : 0.02	
g : 0.13	= : 0.13	f : 0.11	d : 0.11	b : 0.09	e : 0.09	[ : 0.09	c : 0.09	: : 0.04	i : 0.02	# : 0.02	! : 0.02	" : 0.02	
= : 0.13	b : 0.09	[ : 0.09	g : 0.09	f : 0.09	d : 0.09	c : 0.09	e : 0.06	! : 0.06	i : 0.04	# : 0.04	: : 0.04	a : 0.02	" : 0.02	
d : 0.13	c : 0.09	g : 0.09	= : 0.09	! : 0.09	f : 0.09	[ : 0.09	e : 0.06	# : 0.06	" : 0.06	i : 0.04	: : 0.02	a : 0.02	b : 0.02	
c : 0.15	d : 0.11	" : 0.11	g : 0.09	= : 0.09	[ : 0.09	f : 0.09	e : 0.06	# : 0.06	i : 0.04	! : 0.02	h : 0.02	b : 0.02	
c : 0.15	g : 0.11	d : 0.11	" : 0.11	# : 0.09	= : 0.09	b : 0.09	f : 0.06	[ : 0.04	i : 0.04	e : 0.04	h : 0.02	
c : 0.15	g : 0.11	d : 0.09	= : 0.09	" : 0.09	f : 0.09	# : 0.06	e : 0.06	b : 0.06	a : 0.04	i : 0.04	! : 0.02	h : 0.02	[ : 0.02	
[ : 0.25	g : 0.09	= : 0.09	c : 0.09	d : 0.09	f : 0.09	e : 0.06	" : 0.06	! : 0.04	# : 0.04	i : 0.04	h : 0.02	
d : 0.15	c : 0.13	g : 0.09	" : 0.09	f : 0.09	= : 0.06	b : 0.06	a : 0.04	! : 0.04	h : 0.04	e : 0.04	[ : 0.04	i : 0.04	# : 0.02	
d : 0.18	c : 0.11	b : 0.11	f : 0.11	g : 0.09	i : 0.06	= : 0.06	" : 0.06	h : 0.04	# : 0.04	[ : 0.02	e : 0.02	a : 0.02	! : 0.02	
d : 0.18	c : 0.13	b : 0.11	g : 0.09	i : 0.06	" : 0.06	f : 0.06	h : 0.04	# : 0.04	= : 0.04	[ : 0.04	a : 0.04	: : 0.02	e : 0.02	
[ : 0.20	g : 0.13	d : 0.13	" : 0.09	b : 0.09	! : 0.06	f : 0.06	i : 0.04	h : 0.04	# : 0.04	c : 0.02	= : 0.02	e : 0.02	
" : 0.13	! : 0.13	d : 0.11	g : 0.11	[ : 0.11	a : 0.09	c : 0.04	# : 0.04	f : 0.04	e : 0.04	b : 0.04	i : 0.02	= : 0.02	h : 0.02	
! : 0.15	" : 0.15	d : 0.13	e : 0.13	g : 0.09	b : 0.06	c : 0.06	f : 0.04	x : 0.02	i : 0.02	[ : 0.02	= : 0.02	h : 0.02	a : 0.02	
d : 0.27	e : 0.13	! : 0.11	g : 0.09	" : 0.09	c : 0.09	b : 0.04	[ : 0.04	x : 0.02	i : 0.02	= : 0.02	f : 0.02	h : 0.02	
d : 0.29	c : 0.27	e : 0.13	g : 0.09	" : 0.04	! : 0.04	x : 0.02	i : 0.02	w : 0.02	= : 0.02	h : 0.02	
c : 0.25	d : 0.22	e : 0.11	[ : 0.11	g : 0.09	b : 0.06	x : 0.02	i : 0.02	w : 0.02	= : 0.02	! : 0.02	t : 0.02	
c : 0.22	d : 0.18	a : 0.13	b : 0.09	e : 0.09	g : 0.06	s : 0.04	x : 0.02	i : 0.02	w : 0.02	q : 0.02	r : 0.02	= : 0.02	t : 0.02	
q : 0.70	r : 0.06	s : 0.06	d : 0.04	x : 0.02	w : 0.02	c : 0.02	b : 0.02	t : 0.02	
q : 0.74	r : 0.09	s : 0.06	x : 0.02	w : 0.02	o : 0.02	t : 0.02	
q : 0.74	r : 0.09	s : 0.06	x : 0.02	w : 0.02	o : 0.02	t : 0.02	
q : 0.74	r : 0.09	s : 0.06	x : 0.02	w : 0.02	o : 0.02	t : 0.02	
q : 0.74	r : 0.09	s : 0.06	x : 0.02	w : 0.02	o : 0.02	t : 0.02	
q : 0.74	r : 0.09	s : 0.06	x : 0.02	w : 0.02	o : 0.02	t : 0.02	
q : 0.74	r : 0.09	s : 0.06	x : 0.02	w : 0.02	o : 0.02	t : 0.02	
q : 0.72	r : 0.09	s : 0.06	d : 0.04	x : 0.02	w : 0.02	t : 0.02	
c : 0.20	d : 0.15	a : 0.11	e : 0.09	b : 0.06	r : 0.06	g : 0.06	s : 0.06	q : 0.04	x : 0.02	i : 0.02	w : 0.02	= : 0.02	t : 0.02	
c : 0.25	d : 0.22	e : 0.11	] : 0.09	b : 0.06	g : 0.06	x : 0.02	i : 0.02	a : 0.02	w : 0.02	= : 0.02	2 : 0.02	r : 0.02	s : 0.02	
c : 0.29	d : 0.27	e : 0.13	g : 0.06	] : 0.04	i : 0.02	3 : 0.02	w : 0.02	= : 0.02	2 : 0.02	h : 0.02	b : 0.02	4 : 0.02	
d : 0.25	] : 0.13	e : 0.13	3 : 0.11	c : 0.09	g : 0.09	b : 0.04	i : 0.02	2 : 0.02	= : 0.02	f : 0.02	h : 0.02	4 : 0.02	
d : 0.22	3 : 0.13	e : 0.13	g : 0.09	2 : 0.09	c : 0.04	b : 0.04	] : 0.04	f : 0.04	a : 0.04	i : 0.02	= : 0.02	h : 0.02	4 : 0.02	
2 : 0.18	d : 0.15	3 : 0.13	] : 0.13	g : 0.11	a : 0.04	f : 0.04	e : 0.04	i : 0.02	= : 0.02	b : 0.02	h : 0.02	c : 0.02	4 : 0.02	
d : 0.20	g : 0.13	b : 0.13	2 : 0.11	] : 0.09	f : 0.06	h : 0.04	3 : 0.04	a : 0.04	i : 0.02	= : 0.02	4 : 0.02	e : 0.02	c : 0.02	
d : 0.20	b : 0.18	g : 0.11	f : 0.11	c : 0.09	] : 0.09	3 : 0.04	h : 0.04	i : 0.02	e : 0.02	a : 0.02	= : 0.02	4 : 0.02	
d : 0.13	3 : 0.11	g : 0.11	f : 0.11	b : 0.11	c : 0.09	] : 0.09	4 : 0.06	i : 0.04	h : 0.04	= : 0.04	e : 0.02	
d : 0.13	c : 0.13	3 : 0.11	g : 0.11	4 : 0.11	f : 0.09	= : 0.06	b : 0.06	h : 0.04	e : 0.04	] : 0.04	i : 0.02	
] : 0.15	c : 0.13	3 : 0.13	g : 0.11	4 : 0.09	f : 0.09	= : 0.06	d : 0.06	e : 0.04	h : 0.02	2 : 0.02	i : 0.02	a : 0.02	
c : 0.20	f : 0.13	g : 0.11	4 : 0.11	d : 0.09	a : 0.06	e : 0.04	= : 0.04	3 : 0.04	2 : 0.04	h : 0.02	] : 0.02	b : 0.02	i : 0.02	
c : 0.18	d : 0.11	f : 0.11	] : 0.11	g : 0.09	4 : 0.06	= : 0.04	b : 0.04	3 : 0.04	i : 0.04	2 : 0.04	e : 0.04	h : 0.02	5 : 0.02	
c : 0.20	d : 0.13	g : 0.09	e : 0.09	f : 0.09	= : 0.09	b : 0.04	] : 0.04	i : 0.04	4 : 0.04	! : 0.02	h : 0.02	a : 0.02	2 : 0.02	5 : 0.02	

#score	729.9332997903864
#seq	44
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_CDS_m3_run2.txt

#BEAR
^^^^^^^^^^^^^^^^^^^^^^hhhhhhhh]bb]bb333c	chr14:81686746-81687065(-)$1	319	68	108	48.0952
^^^^^^^^^^^^^^^^^^^^^^^^^dddd22=========	chr9:134067478-134067725(+)$1	247	93	133	47.5738

#otherMatches

#Seq PSSM
AUUUUGUUUAAAAUUUUUUCCCCAAUCUUGCGGUGAUUUG	chr14:81686746-81687065(-)$1	319	68	108	48.0952
uuuuuuuuuuuCCAUAAUUUCAGGGACAGCCAAGAUAGAA	chr9:134067478-134067725(+)$1	247	93	133	47.5738

#DB
......................)))))))).)).))...)	chr14:81686746-81687065(-)$1	1	68	108	48.0952
.........................))))..)))))))))	chr9:134067478-134067725(+)$1	1	93	133	47.5738

#PSSM
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
h : 0.50	^ : 0.50	
h : 0.50	^ : 0.50	
h : 0.50	^ : 0.50	
h : 0.50	d : 0.50	
h : 0.50	d : 0.50	
h : 0.50	d : 0.50	
h : 0.50	d : 0.50	
h : 0.50	2 : 0.50	
] : 0.50	2 : 0.50	
b : 0.50	= : 0.50	
b : 0.50	= : 0.50	
] : 0.50	= : 0.50	
b : 0.50	= : 0.50	
b : 0.50	= : 0.50	
3 : 0.50	= : 0.50	
3 : 0.50	= : 0.50	
3 : 0.50	= : 0.50	
c : 0.50	= : 0.50	

#score	95.6690198061
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_transcript_m1_run1.txt

#BEAR
dd!!cccccc####eeeeeooooooeeeee333ccc]ccc	chr16:81576424-81576751(+)$1	327	105	145	13.7732
##ggggggg!!a[a[bboooooobb]a]aggggggg22ee	chr17:40612765-40613005(+)$1	240	12	52	18.1367
eee[adddd####ddddoooooodddd4444dddd22a]e	chr6:158402848-158403097(+)$1	249	129	169	15.1369
ff!!ggggggg[eeeeeooooooeeeee4444gggggggf	chr11:72463246-72463549(-)$1	303	17	57	16.4148
==========^^^^^^^^^^^^^^^^^^^^==========	chr11:123612151-123612455(-)$1	304	131	171	15.0015
gg!!ccc!!ccc[ddddoooooodddd]cccccc22gggg	chr8:37962950-37963283(+)$1	333	249	289	15.9649
bggggggg"""ccccccooooooccc]ccc22ggggggg]	chr22:29280521-29280781(+)$1	260	42	82	17.9189
EE=========="""ccclllccc4444==========:f	chr5:72143863-72144180(+)$1	317	60	100	16.3569
d!!==========[cccooooooccc]==========444	chr19:50380454-50380706(-)$1	252	106	146	22.1749
=======[eeeee[bbammmma]bb]eeeee]========	chr1:1551170-1551474(+)$1	304	31	71	15.1338
============####bbnnnnnbb4444===========	chr4:73935195-73935528(-)$1	333	47	87	19.4711
ggggg[ccc"""bb[bboooooobb]bb]ccc]ggggggg	chr17:76124592-76124898(-)$1	306	179	219	17.2261
ccdddd[===========lll===========dddd]ccc	chr2:170550880-170551213(+)$1	333	127	167	15.0750
ee[ggggggg!!a[cccooooooccc]a22ggggggg]ee	chr12:49741694-49741990(+)$1	296	225	265	18.4242
!!=============aqqqqqqqqa]=============e	chr17:79963066-79963333(+)$1	267	6	46	17.5635
h=============rrrrrrrrr=============333h	chr16:50607668-50607920(+)$1	252	205	245	18.3783
hhhhhiiiiiiiiicccooooooccc22iiiiiiiii:::	chr22:49088882-49089174(+)$1	292	134	174	15.8448
============[cccqqqqqqqqccc]============	chr20:34042912-34043257(+)$1	345	24	64	17.7407
c####a[eeeee!!cccnnnnnccc22eeeee]a333ccc	chr19:58258103-58258426(+)$1	323	238	278	13.1836
eeeee[ccc!!a[ddddoooooodddd]accc]eeeee]e	chr1:154600224-154600500(-)$1	276	58	98	14.9765
iiiiiiiii[bb!!cccooooooccc]bb]iiiiiiiii]	chr15:75198930-75199213(-)$1	283	172	212	20.1799
iiiiiiiii"""bb[bbmmmmbbbb333iiiiiiiii]bb	chr12:121734321-121734610(-)$1	289	189	229	15.7865
ccc[bbiiiiiiiii[aooooooaiiiiiiiii]bb]ccc	chr16:24550821-24551095(+)$1	274	123	163	17.8298
cc[ggggggg"""ddddoooooodddd22ggggggg]ccc	chr2:100106232-100106582(-)$1	350	239	279	18.1097
[ggggggg[a####cccqqqqqqqqccc4444aggggggg	chr16:87417144-87417465(-)$1	321	225	265	14.5742
==========bb[ddddmmmmdddd]bb]===========	chr10:74451805-74452159(+)$1	354	129	169	16.5555
ddd[dddda[ccc[cccooooooccc22ccc]a]dddddd	chr17:74497270-74497560(-)$1	290	75	115	14.6951
ccc!!iiiiiiiii[bboooooobb]iiiiiiiii88888	chr14:53258011-53258305(-)$1	294	199	239	16.8620
iiiiiiiii[dddd[cccmmmmccc]dddd22iiiiiiii	chr16:75273319-75273564(-)$1	245	21	61	14.6936
=====accc[bb[ccclllccc]bb]ccc]a]========	chr2:219432878-219433169(-)$1	291	53	93	15.1312
============"""bboooooobb]============cc	chr17:40761185-40761493(-)$1	308	203	243	22.5393
bb[==========[cccooooooccc]==========444	chr7:1543855-1544116(-)$1	261	171	211	21.8303
ddd"""dddd"""ddddoooooodddd333dddd]ddddc	chr16:28857877-28858130(+)$1	253	32	72	14.6429
:ccc=============oooooo=============]ccc	chr10:99205833-99206096(+)$1	263	124	164	19.9152
b]cccggggggg!!cccrrrrrrrrrccc4444ggggggg	chr3:50126263-50126563(+)$1	300	19	59	14.5263
!!iiiiiiiii[bb[bboooooobb22bb]iiiiiiiii3	chr12:54121085-54121330(-)$1	245	89	129	18.9544
ccc[bb[bb[bb"""bboooooobb4444bb]bb]bb22c	chr2:42720945-42721216(-)$1	271	20	60	15.3625
"ffffff"""ccc[cccooooooccccccffffff4444e	chr7:44084222-44084511(+)$1	289	116	156	15.3599
[============ddddnnnnndddd4444==========	chr2:220042895-220043186(+)$1	291	24	64	18.6045
=========a[bb[bb[bbmmmmbb]bb333bb]a]====	chr21:46221520-46221829(-)$1	309	190	230	14.2625
=========####a[cccmmmmccc]a]============	chr11:124492666-124493001(+)$1	335	45	85	19.3212
fa[ggggggg"""eeeeennnnneeeee333ggggggg]a	chr1:24969682-24969942(+)$1	260	13	53	14.6167
========[dddd[cccooooooccc]dddd]========	chr8:119123802-119124168(-)$1	366	20	60	19.3272
============[cccpppppppccc]============F	chr17:18965296-18965548(+)$1	252	117	157	16.4947
==========!!a[a[annnnna]a]a22===========	chr21:34143812-34144128(-)$1	316	249	289	19.3950
ccc!!bb[ccca[ddddoooooodddd22a]ccc]bbccc	chr2:55920766-55921078(-)$1	312	117	157	15.3542
e[a[a[bb[ffffff[aooooooaffffff]bb]a333a]	chr8:128806763-128807026(+)$1	263	20	60	14.1875
ccc==========!!ccclllccc22==========333c	chr22:36635332-36635587(-)$1	255	149	189	18.6861

#otherMatches

#Seq PSSM
AGGAACGGUUUACAUUGCAGCAGUAUGUAGCUUGACUUGU	chr16:81576424-81576751(+)$1	327	105	145	13.7732
AUGUAAAUGCAAGAGCCGUAGUGGGGUGUCAUUUGCUCUU	chr17:40612765-40613005(+)$1	240	12	52	18.1367
AGUGGGCCCGACCCUCAUGGCCCUGAGCAAAGGGCUGCGG	chr6:158402848-158403097(+)$1	249	129	169	15.1369
cccagccccaccuuccccuccccGGGAGUCACGUGGGGCG	chr11:72463246-72463549(-)$1	303	17	57	16.4148
CUGUUUCGGUCGGGAGUGGGUGGGAGAGAAGCCGGGGCAG	chr11:123612151-123612455(-)$1	304	131	171	15.0015
AGAGGGGAUCUCUGCUGCUCCGACAGUUGAGCCCAGUUCC	chr8:37962950-37963283(+)$1	333	249	289	15.9649
CCUUCUGCGGGGCUCUGGACAAGCAGCAGCAGGCAGGGGA	chr22:29280521-29280781(+)$1	260	42	82	17.9189
GGGGCCAGAUUGCAAAUUCGCGGUGACUCAGUCUGGUCGG	chr5:72143863-72144180(+)$1	317	60	100	16.3569
GAGGGCAUGGCCUAAGCCGGUCAGCUAAGGCCAUGUUAAU	chr19:50380454-50380706(-)$1	252	106	146	22.1749
GGAGUUGUGGUCCGGCCACCCGCGCGGGACUCCAGCUCCC	chr1:1551170-1551474(+)$1	304	31	71	15.1338
CGCGCAUGCGCUUUAUGCCCGCUGUUGCUGGCGCGUGCGC	chr4:73935195-73935528(-)$1	333	47	87	19.4711
CGGCCCCUCCUCCCCGGCGCCUCCCAGGUGAGCGGCCGCG	chr17:76124592-76124898(-)$1	306	179	219	17.2261
GCGCCUGCGCUUGCGAGCUGGGCUUGUGAGUGGGGCUGCC	chr2:170550880-170551213(+)$1	333	127	167	15.0750
CUGGCUGGUGGUCGCUCCAGAUAGAGGGGACACUGGCAGG	chr12:49741694-49741990(+)$1	296	225	265	18.4242
GCCCGCUGGGCAGAGCAGAACACGGCCUCUGCUCAGUGGC	chr17:79963066-79963333(+)$1	267	6	46	17.5635
ugacauauauguauguauauauaaugcaugugugucuaua	chr16:50607668-50607920(+)$1	252	205	245	18.3783
GCCUCACUCGUCCUCAGAGCAGCCUGGCAGGAUGAGUCCA	chr22:49088882-49089174(+)$1	292	134	174	15.8448
GGGCGGGGCCUGGCCCUCUGCCUCGGGGUGGGCUCCGCCC	chr20:34042912-34043257(+)$1	345	24	64	17.7407
ACCAAGGCCGGGAUCGGGACCACCGUGCCCGGGUACCUGC	chr19:58258103-58258426(+)$1	323	238	278	13.1836
UUCCCGACUGAAGGUAGAGAAGGCUACGUGGUGGGGGAGG	chr1:154600224-154600500(-)$1	276	58	98	14.9765
CCUCCGGGCAGAUCGGUAAUAGAGCCCUCCGUCUGGGGGA	chr15:75198930-75199213(-)$1	283	172	212	20.1799
GCCCGGGGCAAGGGACGCAgccgccgcggccccgggcgcc	chr12:121734321-121734610(-)$1	289	189	229	15.7865
GUCGCCGCCGCUCGGUGAGAGCCCCCGAGCGGCAGGGGGC	chr16:24550821-24551095(+)$1	274	123	163	17.8298
CCGGGGUCCGCAAGGCCGGAGAAGGCCGCCGGGCCCGGGC	chr2:100106232-100106582(-)$1	350	239	279	18.1097
AGACCCCGAGGAGGAGCGCAUCGAGGCUAGCGCCGGGGUC	chr16:87417144-87417465(-)$1	321	225	265	14.5742
UCCUGCUGCUCCUCUCCUCUCGGggcggcggcggcggggg	chr10:74451805-74452159(+)$1	354	129	169	16.5555
CUCGCAGGCGCCGCACGGAGUUGCGUCCCGGGGACUUGGG	chr17:74497270-74497560(-)$1	290	75	115	14.6951
UGUGUCCUGGGGGCUGGGGCGGGCCUGCCCUCAGGUUUAU	chr14:53258011-53258305(-)$1	294	199	239	16.8620
GGCUCCUGGAUUGGGACCUGGGGGUGCCAGAGCCGGGAGC	chr16:75273319-75273564(-)$1	245	21	61	14.6936
CGCGCCUGUCUGGUCGCGUCGAGUgugcgugcgugcgugc	chr2:219432878-219433169(-)$1	291	53	93	15.1312
CUUUCAGGGGCCGCCGAGAUGUGUCAGGCUCCUGGGAGCG	chr17:40761185-40761493(-)$1	308	203	243	22.5393
GGCCUGGGCGCUUCCUCAUUGCCGGGCGAGCGCCUGGUUC	chr7:1543855-1544116(-)$1	261	171	211	21.8303
CGCGAAGGCUCAUGGGCGUAGUAGUUCUCAGGUCGGCGGG	chr16:28857877-28858130(+)$1	253	32	72	14.6429
UCCGGGUCCGCUGCCUGGCGCUGCGGGCGGCGGGCCAUGG	chr10:99205833-99206096(+)$1	263	124	164	19.9152
CCAGGCCGCUUCGAGGAUUGGACUUCUCCGCAGGAGGCGG	chr3:50126263-50126563(+)$1	300	19	59	14.5263
GUGCUGUUUUUGUUGUUGGUGAAAGGUGAGGGGAACAGCU	chr12:54121085-54121330(-)$1	245	89	129	18.9544
GCGAGGAGGAGGACUGCACAGAggccccgcccccgccgcc	chr2:42720945-42721216(-)$1	271	20	60	15.3625
GGCGGCGAACCUGAGCCGGAACGGGCCAGCGCUGCAAGAG	chr7:44084222-44084511(+)$1	289	116	156	15.3599
CGCGUCACGUGACGGGCUCAGCGCUCCGCAGUCACGUGAC	chr2:220042895-220043186(+)$1	291	24	64	18.6045
CUGAUGGCCGAGUACAAACGUGAGUCUGGGGACCCGGGCC	chr21:46221520-46221829(-)$1	309	190	230	14.2625
GGAAGUUACACACUGCCGACACCGGGACGUAACUUCCGGG	chr11:124492666-124493001(+)$1	335	45	85	19.3212
GGGCGGGCGCAACGACGCGCGCUGCGUCCCGGCGCUCGGC	chr1:24969682-24969942(+)$1	260	13	53	14.6167
GGCAGCGCGGGCUGCGUGGAUGGAUGAGGUCAGCGCUGUC	chr8:119123802-119124168(-)$1	366	20	60	19.3272
gagagggagagaacgcggucugagugguUUUUCCUUCUUG	chr17:18965296-18965548(+)$1	252	117	157	16.4947
CGCCGCCGGGCACGGGCGAAGAGGCGGGCCCCGGUGGCGG	chr21:34143812-34144128(-)$1	316	249	289	19.3950
GUCAUGGCGGCCUGCAGGUACUGCUGCUCGUGCCUCCGGC	chr2:55920766-55921078(-)$1	312	117	157	15.3542
GGCAGAGCGCGUGUGGCGGCCGAGCACAUgggcccgcggg	chr8:128806763-128807026(+)$1	263	20	60	14.1875
agcucuauaagggaaggaucauucagcuuuuguagauaag	chr22:36635332-36635587(-)$1	255	149	189	18.6861

#DB
((..((((((....(((((......)))))...))).)))	chr16:81576424-81576751(+)$1	1	105	145	13.7732
..(((((((..(.(.((......)).).))))))))..))	chr17:40612765-40613005(+)$1	1	12	52	18.1367
(((.(((((....((((......))))....))))..).)	chr6:158402848-158403097(+)$1	1	129	169	15.1369
((..(((((((.(((((......)))))....))))))))	chr11:72463246-72463549(-)$1	1	17	57	16.4148
((((((((((....................))))))))))	chr11:123612151-123612455(-)$1	1	131	171	15.0015
((..(((..(((.((((......)))).))))))..))))	chr8:37962950-37963283(+)$1	1	249	289	15.9649
((((((((...((((((......))).)))..))))))).	chr22:29280521-29280781(+)$1	1	42	82	17.9189
((((((((((((...(((...)))....)))))))))).(	chr5:72143863-72144180(+)$1	1	60	100	16.3569
(..((((((((((.(((......))).))))))))))...	chr19:50380454-50380706(-)$1	1	106	146	22.1749
(((((((.(((((.(((....).)).))))).))))))))	chr1:1551170-1551474(+)$1	1	31	71	15.1338
((((((((((((....((.....))....)))))))))))	chr4:73935195-73935528(-)$1	1	47	87	19.4711
(((((.(((...((.((......)).)).))).)))))))	chr17:76124592-76124898(-)$1	1	179	219	17.2261
((((((.(((((((((((...))))))))))))))).)))	chr2:170550880-170551213(+)$1	1	127	167	15.0750
((.(((((((..(.(((......))).)..))))))).))	chr12:49741694-49741990(+)$1	1	225	265	18.4242
..((((((((((((((........).))))))))))))))	chr17:79963066-79963333(+)$1	1	6	46	17.5635
((((((((((((((.........)))))))))))))...)	chr16:50607668-50607920(+)$1	1	205	245	18.3783
)))))((((((((((((......)))..)))))))))...	chr22:49088882-49089174(+)$1	1	134	174	15.8448
((((((((((((.(((........))).))))))))))))	chr20:34042912-34043257(+)$1	1	24	64	17.7407
(....(.(((((..(((.....)))..))))).)...)))	chr19:58258103-58258426(+)$1	1	238	278	13.1836
(((((.(((..(.((((......)))).)))).))))).)	chr1:154600224-154600500(-)$1	1	58	98	14.9765
(((((((((.((..(((......))).)).))))))))).	chr15:75198930-75199213(-)$1	1	172	212	20.1799
(((((((((...((.((....))))...))))))))).))	chr12:121734321-121734610(-)$1	1	189	229	15.7865
(((.(((((((((((.(......)))))))))).)).)))	chr16:24550821-24551095(+)$1	1	123	163	17.8298
((.(((((((...((((......))))..))))))).)))	chr2:100106232-100106582(-)$1	1	239	279	18.1097
.(((((((.(....(((........)))....))))))))	chr16:87417144-87417465(-)$1	1	225	265	14.5742
((((((((((((.((((....)))).)).)))))))))))	chr10:74451805-74452159(+)$1	1	129	169	16.5555
(((.(((((.(((.(((......)))..))).).))))))	chr17:74497270-74497560(-)$1	1	75	115	14.6951
(((..(((((((((.((......)).))))))))).....	chr14:53258011-53258305(-)$1	1	199	239	16.8620
(((((((((.((((.(((....))).))))..))))))))	chr16:75273319-75273564(-)$1	1	21	61	14.6936
(((((((((.((.(((...))).)).))).).))))))))	chr2:219432878-219433169(-)$1	1	53	93	15.1312
((((((((((((...((......)).))))))))))))))	chr17:40761185-40761493(-)$1	1	203	243	22.5393
((.((((((((((.(((......))).))))))))))...	chr7:1543855-1544116(-)$1	1	171	211	21.8303
(((...((((...((((......))))...)))).)))))	chr16:28857877-28858130(+)$1	1	32	72	14.6429
.((((((((((((((((......))))))))))))).)))	chr10:99205833-99206096(+)$1	1	124	164	19.9152
).)))(((((((..(((.........)))....)))))))	chr3:50126263-50126563(+)$1	1	19	59	14.5263
..(((((((((.((.((......))..)).))))))))).	chr12:54121085-54121330(-)$1	1	89	129	18.9544
(((.((.((.((...((......))....)).)).))..)	chr2:42720945-42721216(-)$1	1	20	60	15.3625
.((((((...(((.(((......))))))))))))....)	chr7:44084222-44084511(+)$1	1	116	156	15.3599
.((((((((((((((((.....))))....))))))))))	chr2:220042895-220043186(+)$1	1	24	64	18.6045
((((((((((.((.((.((....)).))...)).).))))	chr21:46221520-46221829(-)$1	1	190	230	14.2625
(((((((((....(.(((....))).).))))))))))))	chr11:124492666-124493001(+)$1	1	45	85	19.3212
((.(((((((...(((((.....)))))...))))))).)	chr1:24969682-24969942(+)$1	1	13	53	14.6167
((((((((.((((.(((......))).)))).))))))))	chr8:119123802-119124168(-)$1	1	20	60	19.3272
((((((((((((.(((.......))).)))))))))))))	chr17:18965296-18965548(+)$1	1	117	157	16.4947
((((((((((..(.(.(.....).).)..)))))))))))	chr21:34143812-34144128(-)$1	1	249	289	19.3950
(((..((.((((.((((......))))..).))).)))))	chr2:55920766-55921078(-)$1	1	117	157	15.3542
(.(.(.((.((((((.(......))))))).)).)...).	chr8:128806763-128807026(+)$1	1	20	60	14.1875
(((((((((((((..(((...)))..))))))))))...)	chr22:36635332-36635587(-)$1	1	149	189	18.6861

#PSSM
= : 0.25	c : 0.16	d : 0.08	e : 0.08	b : 0.06	i : 0.06	f : 0.04	g : 0.04	! : 0.04	h : 0.04	[ : 0.04	# : 0.02	E : 0.02	: : 0.02	" : 0.02	
= : 0.29	c : 0.16	g : 0.08	d : 0.06	e : 0.06	! : 0.06	i : 0.06	# : 0.04	f : 0.04	E : 0.02	h : 0.02	b : 0.02	] : 0.02	a : 0.02	[ : 0.02	
= : 0.33	c : 0.14	! : 0.08	g : 0.08	[ : 0.08	i : 0.08	d : 0.06	e : 0.04	h : 0.02	# : 0.02	f : 0.02	a : 0.02	
= : 0.39	g : 0.14	! : 0.10	[ : 0.10	i : 0.08	c : 0.04	d : 0.02	h : 0.02	# : 0.02	e : 0.02	" : 0.02	f : 0.02	
= : 0.41	g : 0.16	i : 0.08	c : 0.06	a : 0.04	d : 0.04	b : 0.04	! : 0.04	h : 0.02	# : 0.02	e : 0.02	" : 0.02	f : 0.02	
= : 0.39	g : 0.16	i : 0.12	d : 0.06	[ : 0.06	b : 0.06	c : 0.04	a : 0.04	" : 0.02	f : 0.02	
= : 0.39	g : 0.16	i : 0.14	c : 0.10	d : 0.06	[ : 0.06	b : 0.04	f : 0.02	
= : 0.39	g : 0.16	i : 0.14	c : 0.08	d : 0.06	[ : 0.04	b : 0.04	! : 0.02	e : 0.02	" : 0.02	
= : 0.37	i : 0.14	g : 0.12	c : 0.10	[ : 0.06	d : 0.04	" : 0.04	e : 0.04	! : 0.02	a : 0.02	b : 0.02	
= : 0.33	g : 0.10	[ : 0.10	" : 0.08	i : 0.08	c : 0.06	! : 0.04	# : 0.04	e : 0.04	a : 0.04	d : 0.04	f : 0.02	
= : 0.27	" : 0.12	# : 0.08	! : 0.08	c : 0.08	i : 0.08	b : 0.08	g : 0.04	e : 0.04	d : 0.04	^ : 0.02	[ : 0.02	f : 0.02	
= : 0.27	" : 0.10	b : 0.10	# : 0.08	c : 0.08	a : 0.06	i : 0.06	[ : 0.04	e : 0.04	! : 0.04	d : 0.04	^ : 0.02	g : 0.02	f : 0.02	
[ : 0.16	= : 0.16	" : 0.12	# : 0.10	b : 0.08	c : 0.06	i : 0.06	! : 0.06	e : 0.04	a : 0.04	d : 0.04	^ : 0.02	f : 0.02	
d : 0.18	[ : 0.18	c : 0.08	= : 0.08	! : 0.08	# : 0.06	" : 0.06	b : 0.06	i : 0.06	a : 0.04	e : 0.04	^ : 0.02	f : 0.02	
c : 0.31	d : 0.16	[ : 0.14	e : 0.06	" : 0.06	= : 0.06	b : 0.04	^ : 0.02	# : 0.02	r : 0.02	i : 0.02	a : 0.02	f : 0.02	! : 0.02	
c : 0.39	b : 0.18	d : 0.16	e : 0.06	[ : 0.06	= : 0.04	^ : 0.02	# : 0.02	a : 0.02	r : 0.02	
c : 0.33	b : 0.16	d : 0.16	a : 0.08	e : 0.06	= : 0.04	q : 0.04	^ : 0.02	r : 0.02	l : 0.02	[ : 0.02	p : 0.02	
o : 0.52	c : 0.08	m : 0.06	q : 0.06	n : 0.06	e : 0.04	b : 0.04	r : 0.04	^ : 0.02	= : 0.02	l : 0.02	p : 0.02	
o : 0.52	m : 0.10	n : 0.10	l : 0.08	q : 0.06	r : 0.04	e : 0.02	^ : 0.02	b : 0.02	p : 0.02	
o : 0.54	m : 0.12	n : 0.10	l : 0.06	q : 0.06	r : 0.04	^ : 0.02	c : 0.02	p : 0.02	
o : 0.54	m : 0.12	n : 0.10	l : 0.06	q : 0.06	r : 0.04	^ : 0.02	c : 0.02	p : 0.02	
o : 0.54	n : 0.10	c : 0.06	q : 0.06	m : 0.06	r : 0.04	^ : 0.02	a : 0.02	= : 0.02	b : 0.02	d : 0.02	p : 0.02	
o : 0.54	c : 0.10	q : 0.06	] : 0.04	n : 0.04	r : 0.04	d : 0.04	^ : 0.02	= : 0.02	b : 0.02	m : 0.02	p : 0.02	a : 0.02	
c : 0.31	b : 0.22	d : 0.16	= : 0.06	q : 0.06	e : 0.04	a : 0.04	o : 0.02	^ : 0.02	r : 0.02	] : 0.02	
c : 0.29	b : 0.22	d : 0.16	= : 0.06	e : 0.04	a : 0.04	o : 0.02	^ : 0.02	4 : 0.02	i : 0.02	q : 0.02	r : 0.02	f : 0.02	2 : 0.02	
] : 0.25	c : 0.25	d : 0.14	e : 0.06	4 : 0.06	= : 0.06	2 : 0.06	^ : 0.02	3 : 0.02	i : 0.02	r : 0.02	f : 0.02	
d : 0.14	] : 0.14	= : 0.12	c : 0.10	e : 0.08	4 : 0.08	2 : 0.08	a : 0.06	b : 0.06	i : 0.04	^ : 0.02	3 : 0.02	f : 0.02	
= : 0.18	e : 0.10	] : 0.10	4 : 0.10	c : 0.10	b : 0.10	2 : 0.10	3 : 0.04	i : 0.04	d : 0.04	^ : 0.02	a : 0.02	f : 0.02	
= : 0.25	4 : 0.12	c : 0.12	2 : 0.08	i : 0.08	e : 0.06	3 : 0.06	a : 0.04	] : 0.04	b : 0.04	d : 0.04	^ : 0.02	f : 0.02	
= : 0.31	4 : 0.10	c : 0.10	i : 0.08	e : 0.06	] : 0.06	3 : 0.06	g : 0.04	d : 0.04	f : 0.04	^ : 0.02	2 : 0.02	b : 0.02	a : 0.02	
= : 0.35	i : 0.12	4 : 0.08	c : 0.08	3 : 0.06	g : 0.06	2 : 0.04	e : 0.04	d : 0.04	] : 0.04	a : 0.02	b : 0.02	f : 0.02	
= : 0.35	i : 0.12	] : 0.10	g : 0.08	c : 0.08	4 : 0.06	d : 0.04	2 : 0.04	b : 0.04	3 : 0.02	e : 0.02	f : 0.02	
= : 0.39	i : 0.14	g : 0.12	d : 0.06	] : 0.06	b : 0.06	c : 0.04	a : 0.04	3 : 0.02	4 : 0.02	f : 0.02	
= : 0.39	g : 0.18	i : 0.12	] : 0.08	c : 0.06	d : 0.06	a : 0.02	e : 0.02	b : 0.02	f : 0.02	
= : 0.39	g : 0.18	i : 0.12	d : 0.06	] : 0.06	a : 0.04	c : 0.02	2 : 0.02	3 : 0.02	e : 0.02	b : 0.02	f : 0.02	
= : 0.39	g : 0.18	i : 0.10	d : 0.06	b : 0.06	2 : 0.04	3 : 0.04	c : 0.02	e : 0.02	8 : 0.02	4 : 0.02	] : 0.02	
= : 0.35	g : 0.16	] : 0.10	i : 0.10	3 : 0.08	2 : 0.04	d : 0.04	b : 0.04	e : 0.02	8 : 0.02	4 : 0.02	
= : 0.31	c : 0.14	g : 0.14	4 : 0.06	3 : 0.06	i : 0.06	2 : 0.04	] : 0.04	d : 0.04	a : 0.02	: : 0.02	e : 0.02	8 : 0.02	
= : 0.27	c : 0.16	g : 0.12	] : 0.06	4 : 0.06	i : 0.06	e : 0.04	: : 0.04	3 : 0.04	d : 0.04	b : 0.02	8 : 0.02	2 : 0.02	a : 0.02	
c : 0.22	= : 0.22	e : 0.12	g : 0.08	] : 0.06	f : 0.04	4 : 0.04	h : 0.02	: : 0.02	b : 0.02	d : 0.02	8 : 0.02	i : 0.02	3 : 0.02	a : 0.02	F : 0.02	

#score	811.6966592226352
#seq	48
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_UTR_m1_run1.txt

#BEAR
[ddddxxxxxxxxxxxxxxxdddd]	chr2:188329627-188329905(-)$1	278	71	96	22.9371
ddddyyyyyyyyyyyyyyyydddd]	chr3:188604455-188604729(+)$1	274	204	229	24.0176
^^^^^^^^^^^^^^^^^^^^ccc]f	chr11:2153384-2153591(-)$1	207	76	101	22.9650
!!cccyyyyyyyyyyyyyyyyccc2	chr3:148890045-148890310(+)$1	265	165	190	24.0903
d[cccyyyyyyyyyyyyyyyycccd	chr3:50337646-50337966(-)$1	320	69	94	23.9549
gggggyyyyyyyyyyyyyyyygggg	chr5:76370652-76370905(-)$1	253	195	220	23.5803
ccccczzzzzzzzzzzzzzzzzccc	chr11:2153183-2153385(-)$1	202	45	70	21.5140
^^^^^^^^^^^^^^^^^^^^^dddd	chr10:61007267-61007514(+)$1	247	13	38	23.6811
eeeeexxxxxxxxxxxxxxxeeeee	chr9:97845776-97846026(+)$1	250	176	201	23.4278
:eeeeewwwwwwwwwwwwwweeeee	chr13:113539326-113539562(+)$1	236	174	199	20.5624
fffffxxxxxxxxxxxxxxxfffff	chr22:24313551-24313798(-)$1	247	196	221	21.9102
eeeeexxxxxxxxxxxxxxxeeeee	chr11:2152766-2152971(-)$1	205	119	144	23.4278
eeeeexxxxxxxxxxxxxxxeeeee	chr11:2152693-2152898(-)$1	205	46	71	23.4278
^^^^^^^^^^^^^^^^^^^^eeeee	chrX:65817368-65817655(-)$1	287	190	215	23.6518
ffddddwwwwwwwwwwwwwwdddd3	chr11:2153219-2153423(-)$1	204	6	31	20.8855
ggggg^^^^^^^^^^^^^^^^^^^g	chr9:15465111-15465398(+)$1	287	106	131	22.0977
ccccczzzzzzzzzzzzzzzzzccc	chr11:2153202-2153405(-)$1	203	65	90	21.5140
fffff^^^^^^^^^^^^^^^^^^^f	chr2:37074848-37075123(-)$1	275	9	34	21.9523
^^^^^^^^^^^^^^^^^^^^^dddd	chr4:763714-764020(-)$1	306	213	238	23.6811
ffddddwwwwwwwwwwwwwwdddd3	chr11:2153298-2153519(-)$1	221	102	127	20.8855
ddddyyyyyyyyyyyyyyyydddde	chr22:21242540-21242807(+)$1	267	227	252	24.0487
ccccczzzzzzzzzzzzzzzzzccc	chr11:2153176-2153380(-)$1	204	40	65	21.5140
cddddxxxxxxxxxxxxxxxdddd]	chr1:214213031-214213248(+)$1	217	175	200	22.9296
fffffxxxxxxxxxxxxxxxfffff	chr22:24313478-24313751(-)$1	273	149	174	21.9102
^^^^^^^^^^^^^^^^^^^^^dddd	chr3:15090498-15090784(-)$1	286	128	153	23.6811
!!ccc^^^^^^^^^^^^^^^^^^^^	chr11:6634976-6635285(-)$1	309	235	260	22.4988
eeeeexxxxxxxxxxxxxxxeeeee	chr11:2152780-2152983(-)$1	203	131	156	23.4278
fff[bbwwwwwwwwwwwwwwbb]ff	chr22:25465769-25466082(+)$1	313	33	58	19.4747
eeeeexxxxxxxxxxxxxxxeeeee	chr6:64395957-64396220(+)$1	263	80	105	23.4278
^^^^^^^^^^^^^^^^^^^^iiiii	chr13:113706963-113707240(+)$1	277	136	161	22.7827
eeeeexxxxxxxxxxxxxxxeeeee	chr11:2152670-2152872(-)$1	202	20	45	23.4278
ccccczzzzzzzzzzzzzzzzzccc	chr11:2153185-2153388(-)$1	203	48	73	21.5140
^^^^^^^^^^^^^^^^^^^^^dddd	chr19:6663225-6663452(-)$1	227	27	52	23.6811
eeeeexxxxxxxxxxxxxxxeeeee	chr6:99851827-99852075(-)$1	248	58	83	23.4278
ccccczzzzzzzzzzzzzzzzzccc	chr11:2153274-2153492(-)$1	218	152	177	21.5140
^^^^^^^^^^^^^^^^^^^^ggggg	chr18:32913154-32913444(-)$1	290	244	269	22.8948
eeeeewwwwwwwwwwwwwweeeee]	chr13:113539420-113539658(+)$1	238	81	106	21.0970
ccccczzzzzzzzzzzzzzzzzccc	chr11:2153200-2153402(-)$1	202	62	87	21.5140
eeeeexxxxxxxxxxxxxxxeeeee	chr11:2152771-2152974(-)$1	203	122	147	23.4278
ggccc^^^^^^^^^^^^^^^^^^^^	chr14:54416535-54416778(-)$1	243	195	220	22.2868
^^^^^^^^^^^^^^^^^^^^eeeee	chr8:17156320-17156602(+)$1	282	189	214	23.6518
eeeeexxxxxxxxxxxxxxxeeeee	chr11:2152747-2152950(-)$1	203	98	123	23.4278
dd^^^^^^^^^^^^^^^^^^dddd3	chr16:69736565-69736818(+)$1	253	165	190	23.0421
fffffyyyyyyyyyyyyyyyyffff	chr14:75526503-75526788(-)$1	285	2	27	23.2751
ddddyyyyyyyyyyyyyyyydddd]	chr1:10436802-10437068(+)$1	266	14	39	24.0176
ccccczzzzzzzzzzzzzzzzzccc	chr11:2153155-2153357(-)$1	202	17	42	21.5140
^^^^^^^^^^^^^^^^^^^^^dddd	chrX:79931709-79931944(-)$1	235	77	102	23.6811
eeeeexxxxxxxxxxxxxxxeeeee	chr8:101269585-101269934(-)$1	349	100	125	23.4278
ddd^^^^^^^^^^^^^^^^^^^^dd	chr8:27529256-27529502(+)$1	246	59	84	22.9672
b!!bb^^^^^^^^^^^^^^^^^^^^	chr2:191066931-191067252(-)$1	321	55	80	21.6015
ffddddwwwwwwwwwwwwwwdddd3	chr11:2153230-2153432(-)$1	202	15	40	20.8855
^^^^^^^^^^^^^^^^^^^^iiiii	chr8:66630361-66630679(+)$1	318	247	272	22.7827
fffffxxxxxxxxxxxxxxxfffff	chr2:27875299-27875595(-)$1	296	70	95	21.9102
h^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2152407-2152614(-)$1	207	29	54	22.8320
^^^^^^^^^^^^^^^^^^^^ccc]c	chr19:4172629-4173005(+)$1	376	59	84	23.0077
:eeeeewwwwwwwwwwwwwweeeee	chr13:113539389-113539604(+)$1	215	111	136	20.5624
eeeeexxxxxxxxxxxxxxxeeeee	chr11:2152716-2152918(-)$1	202	66	91	23.4278
ddd^^^^^^^^^^^^^^^^^^^^dd	chr9:15465258-15465526(+)$1	268	168	193	22.9672
eeeeyyyyyyyyyyyyyyyyeeeee	chr19:6663586-6663800(-)$1	214	73	98	24.5374
!ddddyyyyyyyyyyyyyyyydddd	chr13:113773732-113773976(+)$1	244	38	63	24.1325
ffddddwwwwwwwwwwwwwwdddd3	chr11:2153362-2153572(-)$1	210	155	180	20.8855
^^^^^^^^^^^^^^^^^^^^eeeee	chr5:110097989-110098286(+)$1	297	111	136	23.6518
ffddddwwwwwwwwwwwwwwdddd3	chr11:2153235-2153438(-)$1	203	21	46	20.8855
!ccc^^^^^^^^^^^^^^^^^^^cc	chr2:207945595-207945933(-)$1	338	245	270	23.0089
ffffffwwwwwwwwwwwwwwfffff	chr3:105293800-105294099(+)$1	299	192	217	19.6927
ddddaxxxxxxxxxxxxxxxa]ddd	chr4:1019793-1020028(+)$1	235	112	137	22.8633
^^^^^^^^^^^^^^^^^^^^eeeee	chr13:52731470-52731799(-)$1	329	160	185	23.6518
ggggggwwwwwwwwwwwwwwggggg	chr17:80218782-80219073(-)$1	291	92	117	20.0100
^^^^^^^^^^^^^^^^^^^^dddd4	chr13:30779639-30779904(-)$1	265	95	120	23.4449
[eeeeewwwwwwwwwwwwwweeeee	chr12:56496321-56496545(+)$1	224	21	46	21.4784

#otherMatches

#Seq PSSM
UUCAACCUCACCAUUUAAUUUUGAU	chr2:188329627-188329905(-)$1	278	71	96	22.9371
AGCUAAAAAGGAGAAGAAAAAGCUA	chr3:188604455-188604729(+)$1	274	204	229	24.0176
UUCCAUCACUAAAAAUCACAGAGCA	chr11:2153384-2153591(-)$1	207	76	101	22.9650
AUGACCUCAAUCAAUUUAAUUGUCU	chr3:148890045-148890310(+)$1	265	165	190	24.0903
UUGCACAUAUUGAGAACCUAAUGCA	chr3:50337646-50337966(-)$1	320	69	94	23.9549
ggcuuuacagcuaaagaaacugagc	chr5:76370652-76370905(-)$1	253	195	220	23.5803
CAGCUacacacacacaacacacagc	chr11:2153183-2153385(-)$1	202	45	70	21.5140
UUCAUUGUGUCAAAACUACUUAGCA	chr10:61007267-61007514(+)$1	247	13	38	23.6811
ugcggcacacacagcacaCACCGCA	chr9:97845776-97846026(+)$1	250	176	201	23.4278
auaugcacauaUCAUGAACAGCGUA	chr13:113539326-113539562(+)$1	236	174	199	20.5624
UUCAUCCUCAUAUGAAAUAAAUGAA	chr22:24313551-24313798(-)$1	247	196	221	21.9102
caugcacacacagcacacacgcaug	chr11:2152766-2152971(-)$1	205	119	144	23.4278
caugcacacacagcacacacgcaug	chr11:2152693-2152898(-)$1	205	46	71	23.4278
cacacacacacacaUUAAUAUCUAU	chrX:65817368-65817655(-)$1	287	190	215	23.6518
AAUUGGCACGACCCUCACCCCCAAA	chr11:2153219-2153423(-)$1	204	6	31	20.8855
AAUUACACAUUAACAUACACACACU	chr9:15465111-15465398(+)$1	287	106	131	22.0977
CAGCUacacacacacaacacacagc	chr11:2153202-2153405(-)$1	203	65	90	21.5140
GGAAAUAAAUUAUUAACGUCCAACU	chr2:37074848-37075123(-)$1	275	9	34	21.9523
UAUCAUAAAAUCAAAACAUUUAAGC	chr4:763714-764020(-)$1	306	213	238	23.6811
AAUUGGCACGACCCUCACCCCCAAA	chr11:2153298-2153519(-)$1	221	102	127	20.8855
UCCUUGGCAUGUAUAUUAGUAGGAG	chr22:21242540-21242807(+)$1	267	227	252	24.0487
CAGCUacacacacacaacacacagc	chr11:2153176-2153380(-)$1	204	40	65	21.5140
GGGACUUUAAAAAAUAGGAUGUCCU	chr1:214213031-214213248(+)$1	217	175	200	22.9296
UUCAUCCUCAUAUGAAAUAAAUGAA	chr22:24313478-24313751(-)$1	273	149	174	21.9102
CUCUAUAUACAAACACAACAAUGCA	chr3:15090498-15090784(-)$1	286	128	153	23.6811
ccaccuucccaaccccaaacaauuc	chr11:6634976-6635285(-)$1	309	235	260	22.4988
caugcacacacagcacacacgcaug	chr11:2152780-2152983(-)$1	203	131	156	23.4278
GCUcacacgcacagcacacagucag	chr22:25465769-25466082(+)$1	313	33	58	19.4747
UGACAUACAUGGAAAUAUUUUGUCA	chr6:64395957-64396220(+)$1	263	80	105	23.4278
cacagacauagacacagacauguac	chr13:113706963-113707240(+)$1	277	136	161	22.7827
caugcacacacagcacacacgcaug	chr11:2152670-2152872(-)$1	202	20	45	23.4278
CAGCUacacacacacaacacacagc	chr11:2153185-2153388(-)$1	203	48	73	21.5140
aaacacacauuacacacacaacauc	chr19:6663225-6663452(-)$1	227	27	52	23.6811
AUGUCAUAAUCUCAGAAGUAGACAU	chr6:99851827-99852075(-)$1	248	58	83	23.4278
CAGCUacacacacacaacacacagc	chr11:2153274-2153492(-)$1	218	152	177	21.5140
UGAUUAAAUACUAUGAAAAUGCCAU	chr18:32913154-32913444(-)$1	290	244	269	22.8948
uaugcacauaUCAUGAACAGCGUAA	chr13:113539420-113539658(+)$1	238	81	106	21.0970
CAGCUacacacacacaacacacagc	chr11:2153200-2153402(-)$1	202	62	87	21.5140
caugcacacacagcacacacgcaug	chr11:2152771-2152974(-)$1	203	122	147	23.4278
UUCACCUUGACCUUAUUUAUGACUU	chr14:54416535-54416778(-)$1	243	195	220	22.2868
UUUAUCUACUAACUUUAUAAUGUGA	chr8:17156320-17156602(+)$1	282	189	214	23.6518
caugcacacacagcacacacgcaug	chr11:2152747-2152950(-)$1	203	98	123	23.4278
CAAAAGUUAAUUCUCAGUACUGCCU	chr16:69736565-69736818(+)$1	253	165	190	23.0421
ccauuuuuaaauguacaauucagug	chr14:75526503-75526788(-)$1	285	2	27	23.2751
GUACUCUUUUCUUUUUUCUUGUGCU	chr1:10436802-10437068(+)$1	266	14	39	24.0176
CAGCUacacacacacaacacacagc	chr11:2153155-2153357(-)$1	202	17	42	21.5140
auacacacacauacacacacacaga	chrX:79931709-79931944(-)$1	235	77	102	23.6811
AGCCUACCAAAGACACACUCAGGCU	chr8:101269585-101269934(-)$1	349	100	125	23.4278
gcacacaaacacauauauacacaug	chr8:27529256-27529502(+)$1	246	59	84	22.9672
auucaucucucuuauucauuuauuc	chr2:191066931-191067252(-)$1	321	55	80	21.6015
AAUUGGCACGACCCUCACCCCCAAA	chr11:2153230-2153432(-)$1	202	15	40	20.8855
ACUCUCCCAUCCCACUUUUAUUUCA	chr8:66630361-66630679(+)$1	318	247	272	22.7827
AGCAGUCCAUUAAGCACACUUUGCU	chr2:27875299-27875595(-)$1	296	70	95	21.9102
AAAGUCCCGCUAAGAUUCUCCAAUG	chr11:2152407-2152614(-)$1	207	29	54	22.8320
cccagacagacagacagacacagcc	chr19:4172629-4173005(+)$1	376	59	84	23.0077
auaugcacauaUCAUGAACAGCGUA	chr13:113539389-113539604(+)$1	215	111	136	20.5624
caugcacacacagcacacacgcaug	chr11:2152716-2152918(-)$1	202	66	91	23.4278
GCUUAUAAAAAUUUAAAACUUUCAG	chr9:15465258-15465526(+)$1	268	168	193	22.9672
CAUGCACAACCACACAAUCACAUGG	chr19:6663586-6663800(-)$1	214	73	98	24.5374
AUGcacacacacacacgccaaugca	chr13:113773732-113773976(+)$1	244	38	63	24.1325
AAUUGGCACGACCCUCACCCCCAAA	chr11:2153362-2153572(-)$1	210	155	180	20.8855
UUCCUUCAUCCCUACACAUUUUCUA	chr5:110097989-110098286(+)$1	297	111	136	23.6518
AAUUGGCACGACCCUCACCCCCAAA	chr11:2153235-2153438(-)$1	203	21	46	20.8855
AUGGAAGAAGAUGAAGAAGGAAACC	chr2:207945595-207945933(-)$1	338	245	270	23.0089
AUUCUGAAAAAGACAUAAAACAGAA	chr3:105293800-105294099(+)$1	299	192	217	19.6927
CUGCCUCAACACUCACACACGUGCA	chr4:1019793-1020028(+)$1	235	112	137	22.8633
AAAAACCACACACACAACCAUUGUg	chr13:52731470-52731799(-)$1	329	160	185	23.6518
UUACUUACAGCUAACAAAAGGGGUG	chr17:80218782-80219073(-)$1	291	92	117	20.0100
CUAACUUUUAAUGUACAUcacacac	chr13:30779639-30779904(-)$1	265	95	120	23.4449
aucauaauucagcacuuaacuauga	chr12:56496321-56496545(+)$1	224	21	46	21.4784

#DB
.((((...............)))).	chr2:188329627-188329905(-)$1	1	71	96	22.9371
((((................)))).	chr3:188604455-188604729(+)$1	1	204	229	24.0176
....................))).)	chr11:2153384-2153591(-)$1	1	76	101	22.9650
..(((................))).	chr3:148890045-148890310(+)$1	1	165	190	24.0903
(.(((................))))	chr3:50337646-50337966(-)$1	1	69	94	23.9549
(((((................))))	chr5:76370652-76370905(-)$1	1	195	220	23.5803
))(((.................)))	chr11:2153183-2153385(-)$1	1	45	70	21.5140
.....................))))	chr10:61007267-61007514(+)$1	1	13	38	23.6811
(((((...............)))))	chr9:97845776-97846026(+)$1	1	176	201	23.4278
.(((((..............)))))	chr13:113539326-113539562(+)$1	1	174	199	20.5624
(((((...............)))))	chr22:24313551-24313798(-)$1	1	196	221	21.9102
(((((...............)))))	chr11:2152766-2152971(-)$1	1	119	144	23.4278
(((((...............)))))	chr11:2152693-2152898(-)$1	1	46	71	23.4278
....................)))))	chrX:65817368-65817655(-)$1	1	190	215	23.6518
((((((..............)))).	chr11:2153219-2153423(-)$1	1	6	31	20.8855
(((((...................)	chr9:15465111-15465398(+)$1	1	106	131	22.0977
))(((.................)))	chr11:2153202-2153405(-)$1	1	65	90	21.5140
(((((...................)	chr2:37074848-37075123(-)$1	1	9	34	21.9523
.....................))))	chr4:763714-764020(-)$1	1	213	238	23.6811
((((((..............)))).	chr11:2153298-2153519(-)$1	1	102	127	20.8855
((((................)))))	chr22:21242540-21242807(+)$1	1	227	252	24.0487
))(((.................)))	chr11:2153176-2153380(-)$1	1	40	65	21.5140
(((((...............)))).	chr1:214213031-214213248(+)$1	1	175	200	22.9296
(((((...............)))))	chr22:24313478-24313751(-)$1	1	149	174	21.9102
.....................))))	chr3:15090498-15090784(-)$1	1	128	153	23.6811
..(((....................	chr11:6634976-6635285(-)$1	1	235	260	22.4988
(((((...............)))))	chr11:2152780-2152983(-)$1	1	131	156	23.4278
(((.((..............)).))	chr22:25465769-25466082(+)$1	1	33	58	19.4747
(((((...............)))))	chr6:64395957-64396220(+)$1	1	80	105	23.4278
....................)))))	chr13:113706963-113707240(+)$1	1	136	161	22.7827
(((((...............)))))	chr11:2152670-2152872(-)$1	1	20	45	23.4278
))(((.................)))	chr11:2153185-2153388(-)$1	1	48	73	21.5140
.....................))))	chr19:6663225-6663452(-)$1	1	27	52	23.6811
(((((...............)))))	chr6:99851827-99852075(-)$1	1	58	83	23.4278
))(((.................)))	chr11:2153274-2153492(-)$1	1	152	177	21.5140
....................)))))	chr18:32913154-32913444(-)$1	1	244	269	22.8948
(((((..............))))).	chr13:113539420-113539658(+)$1	1	81	106	21.0970
))(((.................)))	chr11:2153200-2153402(-)$1	1	62	87	21.5140
(((((...............)))))	chr11:2152771-2152974(-)$1	1	122	147	23.4278
(((((....................	chr14:54416535-54416778(-)$1	1	195	220	22.2868
....................)))))	chr8:17156320-17156602(+)$1	1	189	214	23.6518
(((((...............)))))	chr11:2152747-2152950(-)$1	1	98	123	23.4278
((..................)))).	chr16:69736565-69736818(+)$1	1	165	190	23.0421
(((((................))))	chr14:75526503-75526788(-)$1	1	2	27	23.2751
((((................)))).	chr1:10436802-10437068(+)$1	1	14	39	24.0176
))(((.................)))	chr11:2153155-2153357(-)$1	1	17	42	21.5140
.....................))))	chrX:79931709-79931944(-)$1	1	77	102	23.6811
(((((...............)))))	chr8:101269585-101269934(-)$1	1	100	125	23.4278
(((....................))	chr8:27529256-27529502(+)$1	1	59	84	22.9672
(..((....................	chr2:191066931-191067252(-)$1	1	55	80	21.6015
((((((..............)))).	chr11:2153230-2153432(-)$1	1	15	40	20.8855
....................)))))	chr8:66630361-66630679(+)$1	1	247	272	22.7827
(((((...............)))))	chr2:27875299-27875595(-)$1	1	70	95	21.9102
(........................	chr11:2152407-2152614(-)$1	1	29	54	22.8320
....................))).)	chr19:4172629-4173005(+)$1	1	59	84	23.0077
.(((((..............)))))	chr13:113539389-113539604(+)$1	1	111	136	20.5624
(((((...............)))))	chr11:2152716-2152918(-)$1	1	66	91	23.4278
(((....................))	chr9:15465258-15465526(+)$1	1	168	193	22.9672
((((................)))))	chr19:6663586-6663800(-)$1	1	73	98	24.5374
.((((................))))	chr13:113773732-113773976(+)$1	1	38	63	24.1325
((((((..............)))).	chr11:2153362-2153572(-)$1	1	155	180	20.8855
....................)))))	chr5:110097989-110098286(+)$1	1	111	136	23.6518
((((((..............)))).	chr11:2153235-2153438(-)$1	1	21	46	20.8855
.(((...................))	chr2:207945595-207945933(-)$1	1	245	270	23.0089
((((((..............)))))	chr3:105293800-105294099(+)$1	1	192	217	19.6927
(((((...............).)))	chr4:1019793-1020028(+)$1	1	112	137	22.8633
....................)))))	chr13:52731470-52731799(-)$1	1	160	185	23.6518
((((((..............)))))	chr17:80218782-80219073(-)$1	1	92	117	20.0100
....................)))).	chr13:30779639-30779904(-)$1	1	95	120	23.4449
.(((((..............)))))	chr12:56496321-56496545(+)$1	1	21	46	21.4784

#PSSM
^ : 0.21	e : 0.18	f : 0.17	d : 0.11	c : 0.11	! : 0.05	g : 0.05	[ : 0.02	: : 0.02	b : 0.01	h : 0.01	
^ : 0.22	e : 0.22	f : 0.17	d : 0.14	c : 0.11	g : 0.05	! : 0.04	[ : 0.01	
^ : 0.24	e : 0.22	d : 0.20	c : 0.17	f : 0.10	g : 0.04	! : 0.01	
^ : 0.27	e : 0.22	d : 0.17	c : 0.17	f : 0.08	g : 0.04	[ : 0.01	b : 0.01	
^ : 0.28	e : 0.21	c : 0.15	d : 0.11	f : 0.08	y : 0.05	g : 0.04	b : 0.02	a : 0.01	
^ : 0.35	x : 0.24	y : 0.12	z : 0.10	d : 0.07	e : 0.04	b : 0.01	w : 0.01	f : 0.01	g : 0.01	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.17	y : 0.12	z : 0.10	
^ : 0.35	x : 0.24	w : 0.15	y : 0.12	z : 0.10	e : 0.01	
e : 0.28	^ : 0.20	d : 0.17	z : 0.10	y : 0.07	f : 0.05	c : 0.02	i : 0.02	g : 0.02	b : 0.01	a : 0.01	
e : 0.28	d : 0.25	^ : 0.12	z : 0.10	f : 0.07	c : 0.05	g : 0.04	i : 0.02	b : 0.01	] : 0.01	
e : 0.28	d : 0.27	c : 0.15	^ : 0.12	f : 0.07	g : 0.04	i : 0.02	] : 0.01	
d : 0.30	e : 0.28	c : 0.14	f : 0.08	^ : 0.08	g : 0.04	] : 0.02	i : 0.02	
e : 0.28	d : 0.14	c : 0.12	f : 0.11	3 : 0.08	] : 0.07	g : 0.05	^ : 0.05	i : 0.02	2 : 0.01	4 : 0.01	

#score	1581.8724540279727
#seq	70
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_CDS_m2_run1.txt

#BEAR
ccc[a"""gggggggmmmmggggggg22a]ccc:	chr6:33382627-33382933(+)$1	306	204	238	10.3228
c!!ccc"""eeeeeqqqqqqqqeeeee4444ccc	chr14:51371861-51372269(-)$1	408	257	291	10.0255
[a[dddd[ccccccooooooccc]ccc]dddd]a	chr22:22892389-22892603(-)$1	214	42	76	14.8208
[eeeee####eeeeemmmmeeeee333eeeee]a	chrM:14163-14389(-)$1	226	106	140	10.0662
[a[dddd[ccccccooooooccc]ccc]dddd]a	chr22:22892403-22892615(-)$1	212	54	88	14.8208
cc[bb[bb[ddddoooooodddd]bb]bb]ccc:	chr12:57106469-57106690(-)$1	221	35	69	10.9688
gggggg"""ffffffooooooffffff22ggggg	chr17:29221566-29221825(+)$1	259	177	211	13.2362
iii$$$$$a!!ddddllldddd22a4444iiiii	chr11:66372884-66373132(+)$1	248	114	148	12.1724
b[bb==========oooooo==========]bbb	chr1:37959267-37959557(-)$1	290	207	241	13.2927
dd[bbcccffffffooooooffffff22ccc]bb	chrX:48681491-48681742(+)$1	251	137	171	12.0166
iiiiiccc"""cccooooooccc333ccc>>>>>	chr6:170844132-170844415(-)$1	283	156	190	14.2727
cc!!bb"""cccssssssssssccc333bb]ccc	chr4:159634224-159634499(-)$1	275	54	88	10.7383
cc[ccc[bbccccccnnnnnccc]ccc22bb]cc	chr19:18546371-18546624(-)$1	253	131	165	11.2171
iii$$$$$a!!ddddllldddd22a4444iiiii	chr11:66372932-66373163(+)$1	231	66	100	12.1724
===!!eeeee[ddddoooooodddd333eeeee]	chrM:12615-12884(+)$1	269	151	185	13.0221
dd[ccc####ddddnnnnndddd]ccc]dddd]b	chrX:55035603-55035877(-)$1	274	132	166	11.7470
ee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14250-14483(-)$1	233	113	147	13.3206
gggggg$$$$$ddddnnnnnddddgggggggggg	chr20:60963410-60963640(+)$1	230	94	128	10.3519
[ddddbb!!eeeeeooooooeeeee22bb]dddd	chr12:57031943-57032256(-)$1	313	185	219	11.8254
c!!eeeee[ddddoooooodddd]eeeee22ccc	chr12:95415934-95416231(-)$1	297	130	164	11.7494
hhhhhh"""a[cccooooooccc]a4444hhhhh	chr5:179041819-179042047(-)$1	228	143	177	16.4163
ccc####ccc[ddddmmmmdddd]ccc4444ccc	chr19:34890558-34890791(+)$1	233	49	83	11.9492
f"""bb"""ccccccrrrrrrrrrccc]ccc]bb	chr7:142638205-142638501(-)$1	296	87	121	10.5710
"dddd"""bb[ddddmmmmdddd]bb333dddd3	chr17:34171740-34172025(+)$1	285	33	67	11.2475
[a[dddd[ccccccooooooccc]ccc]dddd]a	chr22:22892385-22892589(-)$1	204	28	62	14.8208
eeeeffffffddddoooooodddd333ffffff]	chr18:43666027-43666314(-)$1	287	167	201	11.7350
hhhhhh"""a[cccooooooccc]a4444hhhhh	chr5:179041847-179042061(-)$1	214	157	191	16.4163
!==========cccooooooccc]==========	chr11:294279-294550(+)$1	271	24	58	15.8855
:ccc[a[ccc[cccooooooccc22ccc]a]ccc	chr19:18390661-18390967(-)$1	306	1	35	13.7598
eee!!a[ccc[cccooooooccc]ccc]a22eee	chr17:34171868-34172124(+)$1	256	97	131	14.8824
fff!!a!!eeeeerrrrrrrrreeeee22a]fff	chr10:93788578-93788870(+)$1	292	137	171	9.6282
b[ccc[a####ddddnnnnndddd4444a]cccb	chr17:43227213-43227473(+)$1	260	142	176	12.4152
f!!ggggggg[aooooooa]ggggggg22fffff	chr17:61895032-61895257(+)$1	225	183	217	11.3395
"ddddbb[ffffffooooooffffff22bb]ddd	chr19:50434223-50434487(+)$1	264	160	194	11.5845
hh[ccc[a[bb[bboooooobb]bb]a]ccchhh	chrM:14199-14425(-)$1	226	172	206	12.1665
ff$$$$$gggggggooooooggggggg333ffff	chr4:57896964-57897284(+)$1	320	201	235	13.0641
hhhhhh"""a[cccooooooccc]a4444hhhhh	chr5:179041715-179041962(-)$1	247	58	92	16.4163
bb[bb!!ccc"""a[aooooooa]a4444ccc22	chr19:49611424-49611708(+)$1	284	86	120	12.6456
gg"""bb!!eeeeeooooooeeeee]bb>>>>>>	chr6:148058416-148058739(+)$1	323	237	271	11.7170
$$ccc[a[cccddddmmmmdddd]ccc]a]ccc5	chrM:9835-10059(+)$1	224	125	159	10.0721
gggggg####ddddoooooodddd55555ggggg	chr17:80445917-80446185(+)$1	268	189	223	12.5183
cc[eeeee[eeeeeooooooeeeee]eeeee]cc	chr1:158581049-158581273(-)$1	224	154	188	12.0107
gggg$$$$$ccc[aooooooa]ccc55555gggg	chr3:141644276-141644508(+)$1	232	45	79	11.8008
b!!ccc!!ffffffooooooffffff333cccbb	chr11:65359645-65359913(+)$1	268	79	113	14.4291
[iiiiiiiii[aqqqqqqqqaiiiiiiiii]ccc	chr3:9986082-9986321(+)$1	239	106	140	9.1463
iiiiii[a[a[ddddoooooodddd]aaiiiiii	chr11:67817870-67818200(+)$1	330	141	175	13.9876
hhhhhhh[ffffffooooooffffff]hhhhhhh	chr11:292902-293168(+)$1	266	12	46	10.7891
a[ccc"""ggggggglllggggggg4444cccaH	chr16:67862330-67862582(-)$1	252	183	217	11.5349
ee[dddd[bb[cccooooooccc22bb]dddd]e	chrM:14225-14450(-)$1	225	80	114	13.3206
ee[cccccc!!cccooooooccc4444ccc333c	chr1:8922854-8923106(-)$1	252	50	84	15.1705
!!eeeee[bb[bboooooobbbb]eeeee22ddd	chr19:10407055-10407345(+)$1	290	100	134	9.9480
eeeee"""gggggggoooooogggggggeeeeeE	chr5:167946001-167946269(+)$1	268	106	140	11.3527
dd####bb"""cccooooooccc]bb4444dddd	chr1:201974718-201974993(+)$1	275	22	56	14.9034
ddd[ccc!!ddddrrrrrrrrrdddd22ccc]dd	chr19:13064945-13065210(-)$1	265	227	261	9.7941
==========[cccmmmmccc]==========:F	chrM:14362-14585(-)$1	223	85	119	9.8779

#otherMatches

#Seq PSSM
GUGGAGGAGCUGGGGCCACCCUCAGCAGUGCGCA	chr6:33382627-33382933(+)$1	306	204	238	10.3228
AGUUGAGUAUCUCUGGGAAUGGGGAGGGAAAUUA	chr14:51371861-51372269(-)$1	408	257	291	10.0255
CCUGUUCCUCAAGGAAGGUGCCUGUGAUGAAUUG	chr22:22892389-22892603(-)$1	214	42	76	14.8208
GGUCAGGGUUGAUUCGGGAGGAUCCUAUUGGUGC	chrM:14163-14389(-)$1	226	106	140	10.0662
CCUGUUCCUCAAGGAAGGUGCCUGUGAUGAAUUG	chr22:22892403-22892615(-)$1	212	54	88	14.8208
UGGUCAUGUCACAAGCAAAUGUGUCGAGAGCAAA	chr12:57106469-57106690(-)$1	221	35	69	10.9688
AAGGCUUUAUUAAAAACAACAUUUUAGAUAGCUU	chr17:29221566-29221825(+)$1	259	177	211	13.2362
GGAGAAGAUGACCUGGGCCGGGGAGGCCAUCCCU	chr11:66372884-66373132(+)$1	248	114	148	12.1724
UCUGGUUUUGUUUUAUGCUGAAAGUAGAACACAA	chr1:37959267-37959557(-)$1	290	207	241	13.2927
GGAGGCUGUCGGGGGAGCCACUCCGGACCAGACC	chrX:48681491-48681742(+)$1	251	137	171	12.0166
UUUGGAACUGUACCUUGGAUGGUUUUGUUUAUUA	chr6:170844132-170844415(-)$1	283	156	190	14.2727
CUUUCAUACUGCUUUUAUUAAUGCAUUCUGCAGA	chr4:159634224-159634499(-)$1	275	54	88	10.7383
ACUCCAGGUGGUCAUCAAGUAUGUGCCGUACGUG	chr19:18546371-18546624(-)$1	253	131	165	11.2171
GGAGAAGAUGACCUGGGCCGGGGAGGCCAUCCCU	chr11:66372932-66373163(+)$1	231	66	100	12.1724
UGAGAGGGCGUAGGAAUUAUAUCCUUCUUGCUCA	chrM:12615-12884(+)$1	269	151	185	13.0221
GCUGCCCCUCCAGGAUGUGUCUGUGGCUGCCUGC	chrX:55035603-55035877(-)$1	274	132	166	11.7470
UGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14250-14483(-)$1	233	113	147	13.3206
GGUUCUAGGAACUUUUGACUGGAGAGAAUCACAG	chr20:60963410-60963640(+)$1	230	94	128	10.3519
CCCUAACCCAAAAAGCUUCAUUUUUCUGUGUAGG	chr12:57031943-57032256(-)$1	313	185	219	11.8254
UCUCAUUGGCAAUAUACGAAUUGACAGUGUUAUC	chr12:95415934-95416231(-)$1	297	130	164	11.7494
GGCGUGAACGGAAUGGGAGGGUUGUCUAGCAUGU	chr5:179041819-179042047(-)$1	228	143	177	16.4163
UCUGUCACUUCUGCAGCCAUGUAUGAGCACAAGA	chr19:34890558-34890791(+)$1	233	49	83	11.9492
CCCAGCCUUUGCCAGGUAUUUCCGCUGUGCACGU	chr7:142638205-142638501(-)$1	296	87	121	10.5710
gguggaggcuaugguggagaccgaggaggcuaug	chr17:34171740-34172025(+)$1	285	33	67	11.2475
CCUGUUCCUCAAGGAAGGUGCCUGUGAUGAAUUG	chr22:22892385-22892589(-)$1	204	28	62	14.8208
AUGCUGCCACUCAACAACUUUUGAGUCGUGGCGU	chr18:43666027-43666314(-)$1	287	167	201	11.7350
GGCGUGAACGGAAUGGGAGGGUUGUCUAGCAUGU	chr5:179041847-179042061(-)$1	214	157	191	16.4163
CUGUCGGGGAUCUCCAGAGUGAGCGUCUCCGGCA	chr11:294279-294550(+)$1	271	24	58	15.8855
CGCGUCUCGGCUGCCCCUUUGUACACCGCGCCGC	chr19:18390661-18390967(-)$1	306	1	35	13.7598
GGUGGCGGCUAUGGAGGAGACCGAGGUGGGGGCU	chr17:34171868-34172124(+)$1	256	97	131	14.8824
CUGCUAGUUCAGUUACAUUUCUGCUGAUAUUCAG	chr10:93788578-93788870(+)$1	292	137	171	9.6282
UUCUCGGAGACGUACGAGCGGUACCACACGGAGA	chr17:43227213-43227473(+)$1	260	142	176	12.4152
GCCGCCAAGGGCAUCCCAGGCUUUGGCAAUACUG	chr17:61895032-61895257(+)$1	225	183	217	11.3395
augugccaggcacuguuuuaggugcugaggauac	chr19:50434223-50434487(+)$1	264	160	194	11.5845
GUGCGGGGGCUUUGUAUGAUUAUGGGCGUUGAUU	chrM:14199-14425(-)$1	226	172	206	12.1665
GAGUCAACAAGAUAAUUAAAUAUCUUGGUGUCUU	chr4:57896964-57897284(+)$1	320	201	235	13.0641
GGCGUGAACGGAAUGGGAGGGUUGUCUAGCAUGU	chr5:179041715-179041962(-)$1	247	58	92	16.4163
ccgcgagcacaaacggggggagcggggcagugag	chr19:49611424-49611708(+)$1	284	86	120	12.6456
AAAAAGCAGGUCCUCCUUUUGGGACAGUGAUCCA	chr6:148058416-148058739(+)$1	323	237	271	11.7170
CUGUAUGUCUCCAUCUAUUGAUGAGGGUCUUACU	chrM:9835-10059(+)$1	224	125	159	10.0721
GAGUGGAGUAUUAAAGACACUUAAGAAAACCGCU	chr17:80445917-80446185(+)$1	268	189	223	12.5183
CGGGGUCGAAGCCAUCUCUCUGGCUAUGACUACG	chr1:158581049-158581273(-)$1	224	154	188	12.0107
GUAUUAAGUUUCCAUAGAGUUUGAAUUAAUAUAU	chr3:141644276-141644508(+)$1	232	45	79	11.8008
CAAGCUGAGCCGGCAGUUGAGCCGGCGGGAGCGC	chr11:65359645-65359913(+)$1	268	79	113	14.4291
GUGGCGGCCAUGACUGGCUACUGGUUGUCAGAGC	chr3:9986082-9986321(+)$1	239	106	140	9.1463
GGUGGGCGUGGCGGCUGUGGUGCUGGUCCCCAUC	chr11:67817870-67818200(+)$1	330	141	175	13.9876
CUGGGACGUGGUCAGGGCUGUGGCCGAGUUUUGG	chr11:292902-293168(+)$1	266	12	46	10.7891
GACCUGGAGCUGCUGAUGCGGCGGUGAGAAGGCG	chr16:67862330-67862582(-)$1	252	183	217	11.5349
UGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14225-14450(-)$1	225	80	114	13.3206
AAUGCCUGCAAAGCUUGUCCGCUGUAAGCAAAUG	chr1:8922854-8923106(-)$1	252	50	84	15.1705
AGGCCGUGUGUCUGAACGGAgcgggcggcggcgc	chr19:10407055-10407345(+)$1	290	100	134	9.9480
GUGGCGUAUGCUGCUAUGUGAAGCAGUAGCUGCU	chr5:167946001-167946269(+)$1	268	106	140	11.3527
UGGCCCAGACCCUCGCCAAGGAGACUUUUGCAUC	chr1:201974718-201974993(+)$1	275	22	56	14.9034
UACCCCUGAAGAGAUCUGCGUCCUCUCAAGGUGU	chr19:13064945-13065210(-)$1	265	227	261	9.7941
UAUUUAGGGGGAAUGAUGGUUGUCUUUGGAUAUA	chrM:14362-14585(-)$1	223	85	119	9.8779

#DB
(((.(...(((((((....)))))))..).))).	chr6:33382627-33382933(+)$1	1	204	238	10.3228
(..(((...(((((........)))))....)))	chr14:51371861-51372269(-)$1	1	257	291	10.0255
.(.((((.((((((......))).))).)))).)	chr22:22892389-22892603(-)$1	1	42	76	14.8208
.(((((....(((((....)))))...))))).)	chrM:14163-14389(-)$1	1	106	140	10.0662
.(.((((.((((((......))).))).)))).)	chr22:22892403-22892615(-)$1	1	54	88	14.8208
((.((.((.((((......)))).)).)).))).	chr12:57106469-57106690(-)$1	1	35	69	10.9688
((((((...((((((......))))))..)))))	chr17:29221566-29221825(+)$1	1	177	211	13.2362
(((.....(..((((...))))..)....)))))	chr11:66372884-66373132(+)$1	1	114	148	12.1724
(.((((((((((((......)))))))))).)))	chr1:37959267-37959557(-)$1	1	207	241	13.2927
((.(((((((((((......))))))..))).))	chrX:48681491-48681742(+)$1	1	137	171	12.0166
((((((((...(((......)))...))).....	chr6:170844132-170844415(-)$1	1	156	190	14.2727
((..((...(((..........)))...)).)))	chr4:159634224-159634499(-)$1	1	54	88	10.7383
((.(((.((((((((.....))).)))..)).))	chr19:18546371-18546624(-)$1	1	131	165	11.2171
(((.....(..((((...))))..)....)))))	chr11:66372932-66373163(+)$1	1	66	100	12.1724
(((..(((((.((((......))))...))))).	chrM:12615-12884(+)$1	1	151	185	13.0221
((.(((....((((.....)))).))).)))).)	chrX:55035603-55035877(-)$1	1	132	166	11.7470
((.((((.((.(((......)))..)).)))).)	chrM:14250-14483(-)$1	1	113	147	13.3206
((((((.....((((.....)))))))))))(((	chr20:60963410-60963640(+)$1	1	94	128	10.3519
.((((((..(((((......)))))..)).))))	chr12:57031943-57032256(-)$1	1	185	219	11.8254
(..(((((.((((......)))).)))))..)))	chr12:95415934-95416231(-)$1	1	130	164	11.7494
((((((...(.(((......))).)....)))))	chr5:179041819-179042047(-)$1	1	143	177	16.4163
(((....(((.((((....)))).)))....)))	chr19:34890558-34890791(+)$1	1	49	83	11.9492
(...((...((((((.........))).))).))	chr7:142638205-142638501(-)$1	1	87	121	10.5710
.((((...((.((((....)))).))...)))).	chr17:34171740-34172025(+)$1	1	33	67	11.2475
.(.((((.((((((......))).))).)))).)	chr22:22892385-22892589(-)$1	1	28	62	14.8208
((((((((((((((......))))...)))))).	chr18:43666027-43666314(-)$1	1	167	201	11.7350
((((((...(.(((......))).)....)))))	chr5:179041847-179042061(-)$1	1	157	191	16.4163
.(((((((((((((......))).))))))))))	chr11:294279-294550(+)$1	1	24	58	15.8855
.(((.(.(((.(((......)))..))).).)))	chr19:18390661-18390967(-)$1	1	1	35	13.7598
(((..(.(((.(((......))).))).)..)))	chr17:34171868-34172124(+)$1	1	97	131	14.8824
(((..(..(((((.........)))))..).)))	chr10:93788578-93788870(+)$1	1	137	171	9.6282
(.(((.(....((((.....))))....).))))	chr17:43227213-43227473(+)$1	1	142	176	12.4152
(..(((((((.(......).)))))))..)))))	chr17:61895032-61895257(+)$1	1	183	217	11.3395
.((((((.((((((......))))))..)).)))	chr19:50434223-50434487(+)$1	1	160	194	11.5845
((.(((.(.((.((......)).)).).))))))	chrM:14199-14425(-)$1	1	172	206	12.1665
((.....(((((((......)))))))...))))	chr4:57896964-57897284(+)$1	1	201	235	13.0641
((((((...(.(((......))).)....)))))	chr5:179041715-179041962(-)$1	1	58	92	16.4163
((.((..(((...(.(......).)....)))..	chr19:49611424-49611708(+)$1	1	86	120	12.6456
((...((..(((((......))))).))......	chr6:148058416-148058739(+)$1	1	237	271	11.7170
..(((.(.(((((((....)))).))).).))).	chrM:9835-10059(+)$1	1	125	159	10.0721
((((((....((((......)))).....)))))	chr17:80445917-80446185(+)$1	1	189	223	12.5183
((.(((((.(((((......))))).))))).))	chr1:158581049-158581273(-)$1	1	154	188	12.0107
((((.....(((.(......).))).....))))	chr3:141644276-141644508(+)$1	1	45	79	11.8008
(..(((..((((((......))))))...)))))	chr11:65359645-65359913(+)$1	1	79	113	14.4291
.(((((((((.(........)))))))))).)))	chr3:9986082-9986321(+)$1	1	106	140	9.1463
((((((.(.(.((((......)))).))))))))	chr11:67817870-67818200(+)$1	1	141	175	13.9876
(((((((.((((((......)))))).)))))))	chr11:292902-293168(+)$1	1	12	46	10.7891
(.(((...(((((((...)))))))....)))))	chr16:67862330-67862582(-)$1	1	183	217	11.5349
((.((((.((.(((......)))..)).)))).)	chrM:14225-14450(-)$1	1	80	114	13.3206
((.((((((..(((......)))....)))...)	chr1:8922854-8923106(-)$1	1	50	84	15.1705
..(((((.((.((......)))).)))))..)))	chr19:10407055-10407345(+)$1	1	100	134	9.9480
(((((...(((((((......))))))))))))(	chr5:167946001-167946269(+)$1	1	106	140	11.3527
((....((...(((......))).))....))))	chr1:201974718-201974993(+)$1	1	22	56	14.9034
(((.(((..((((.........))))..))).))	chr19:13064945-13065210(-)$1	1	227	261	9.7941
((((((((((.(((....))).)))))))))).)	chrM:14362-14585(-)$1	1	85	119	9.8779

#PSSM
c : 0.14	[ : 0.10	e : 0.10	g : 0.09	h : 0.09	i : 0.07	b : 0.07	d : 0.07	f : 0.07	= : 0.03	" : 0.03	! : 0.03	: : 0.01	$ : 0.01	a : 0.01	
c : 0.12	e : 0.12	d : 0.12	! : 0.09	g : 0.09	i : 0.09	h : 0.09	a : 0.05	[ : 0.05	= : 0.05	f : 0.03	" : 0.01	b : 0.01	$ : 0.01	
[ : 0.23	c : 0.10	! : 0.09	e : 0.09	i : 0.09	g : 0.07	d : 0.07	h : 0.07	= : 0.05	" : 0.03	b : 0.01	f : 0.01	$ : 0.01	# : 0.01	
c : 0.18	d : 0.14	e : 0.10	g : 0.09	b : 0.07	! : 0.07	h : 0.07	$ : 0.05	i : 0.05	[ : 0.03	# : 0.03	" : 0.03	= : 0.03	
c : 0.18	d : 0.14	e : 0.09	b : 0.09	g : 0.07	$ : 0.07	h : 0.07	= : 0.05	i : 0.05	! : 0.05	# : 0.03	a : 0.01	f : 0.01	[ : 0.01	" : 0.01	
c : 0.16	d : 0.09	e : 0.09	b : 0.09	" : 0.07	g : 0.07	$ : 0.07	h : 0.07	[ : 0.05	= : 0.05	a : 0.05	# : 0.03	i : 0.03	f : 0.01	! : 0.01	
" : 0.20	d : 0.09	b : 0.09	$ : 0.09	[ : 0.09	# : 0.07	c : 0.07	e : 0.07	= : 0.05	! : 0.05	a : 0.03	f : 0.01	g : 0.01	i : 0.01	h : 0.01	
" : 0.20	[ : 0.16	c : 0.12	! : 0.09	# : 0.07	$ : 0.07	b : 0.05	= : 0.05	e : 0.05	g : 0.03	a : 0.03	f : 0.01	i : 0.01	
" : 0.16	c : 0.16	g : 0.09	[ : 0.09	f : 0.09	b : 0.09	# : 0.07	= : 0.05	! : 0.05	a : 0.03	e : 0.03	$ : 0.03	i : 0.01	
c : 0.21	e : 0.10	f : 0.10	g : 0.09	b : 0.09	# : 0.07	a : 0.07	d : 0.05	! : 0.05	= : 0.05	" : 0.03	$ : 0.01	i : 0.01	
[ : 0.27	c : 0.14	e : 0.10	d : 0.10	f : 0.09	g : 0.07	! : 0.05	" : 0.05	= : 0.03	$ : 0.01	# : 0.01	b : 0.01	
c : 0.34	d : 0.27	e : 0.10	f : 0.09	g : 0.07	a : 0.03	= : 0.01	[ : 0.01	" : 0.01	b : 0.01	
c : 0.30	d : 0.27	e : 0.10	f : 0.09	g : 0.07	b : 0.03	= : 0.01	s : 0.01	o : 0.01	" : 0.01	[ : 0.01	q : 0.01	
c : 0.30	d : 0.21	e : 0.09	f : 0.09	g : 0.07	o : 0.07	r : 0.03	a : 0.03	= : 0.01	s : 0.01	b : 0.01	q : 0.01	
o : 0.56	d : 0.16	g : 0.05	q : 0.03	c : 0.03	r : 0.03	e : 0.01	f : 0.01	s : 0.01	n : 0.01	[ : 0.01	m : 0.01	
o : 0.63	m : 0.10	n : 0.07	l : 0.05	r : 0.05	q : 0.03	s : 0.01	a : 0.01	
o : 0.65	m : 0.10	n : 0.07	l : 0.05	r : 0.05	q : 0.03	s : 0.01	
o : 0.65	m : 0.10	n : 0.07	l : 0.05	r : 0.05	q : 0.03	s : 0.01	
o : 0.63	m : 0.09	n : 0.07	r : 0.05	q : 0.03	d : 0.03	s : 0.01	a : 0.01	g : 0.01	c : 0.01	
o : 0.58	d : 0.14	n : 0.05	r : 0.05	g : 0.03	q : 0.03	e : 0.01	s : 0.01	] : 0.01	b : 0.01	c : 0.01	
c : 0.29	d : 0.21	o : 0.09	g : 0.07	e : 0.07	f : 0.07	r : 0.05	b : 0.03	a : 0.03	q : 0.01	= : 0.01	s : 0.01	
c : 0.27	d : 0.25	g : 0.09	f : 0.09	e : 0.07	r : 0.05	b : 0.03	] : 0.03	q : 0.01	= : 0.01	s : 0.01	o : 0.01	i : 0.01	
c : 0.30	d : 0.23	e : 0.10	g : 0.09	f : 0.09	2 : 0.03	= : 0.03	r : 0.01	] : 0.01	a : 0.01	i : 0.01	b : 0.01	
] : 0.32	d : 0.12	e : 0.10	g : 0.09	f : 0.09	2 : 0.09	= : 0.03	c : 0.03	3 : 0.01	r : 0.01	b : 0.01	i : 0.01	4 : 0.01	
c : 0.20	e : 0.12	g : 0.10	a : 0.10	f : 0.09	b : 0.07	3 : 0.05	= : 0.05	d : 0.05	2 : 0.05	4 : 0.03	5 : 0.01	i : 0.01	
c : 0.18	4 : 0.16	g : 0.09	3 : 0.09	b : 0.09	f : 0.09	e : 0.07	] : 0.07	= : 0.05	5 : 0.03	2 : 0.01	i : 0.01	d : 0.01	
c : 0.20	4 : 0.18	3 : 0.10	2 : 0.09	e : 0.09	g : 0.07	= : 0.05	b : 0.05	] : 0.03	a : 0.03	5 : 0.03	f : 0.01	i : 0.01	
4 : 0.20	] : 0.18	2 : 0.14	3 : 0.09	e : 0.07	b : 0.05	= : 0.05	c : 0.05	g : 0.03	5 : 0.03	f : 0.01	i : 0.01	a : 0.01	h : 0.01	
4 : 0.18	d : 0.10	e : 0.10	c : 0.10	a : 0.07	b : 0.07	2 : 0.07	= : 0.05	3 : 0.05	5 : 0.03	i : 0.03	g : 0.01	f : 0.01	] : 0.01	> : 0.01	h : 0.01	
c : 0.14	d : 0.12	] : 0.09	e : 0.07	i : 0.07	h : 0.07	4 : 0.05	g : 0.05	= : 0.05	b : 0.05	2 : 0.05	> : 0.03	f : 0.03	a : 0.03	3 : 0.01	5 : 0.01	
c : 0.20	d : 0.16	] : 0.10	e : 0.07	g : 0.07	h : 0.07	i : 0.05	2 : 0.05	f : 0.05	4 : 0.03	> : 0.03	= : 0.03	b : 0.01	3 : 0.01	
c : 0.23	d : 0.20	] : 0.09	h : 0.09	e : 0.07	g : 0.07	f : 0.07	i : 0.05	> : 0.03	= : 0.03	b : 0.01	3 : 0.01	
c : 0.21	] : 0.12	d : 0.10	h : 0.09	g : 0.07	b : 0.07	f : 0.07	i : 0.05	e : 0.05	> : 0.03	= : 0.01	2 : 0.01	a : 0.01	3 : 0.01	: : 0.01	
c : 0.16	b : 0.10	d : 0.09	h : 0.09	a : 0.07	g : 0.07	i : 0.05	e : 0.05	f : 0.05	: : 0.03	> : 0.03	] : 0.03	3 : 0.01	= : 0.01	2 : 0.01	5 : 0.01	H : 0.01	E : 0.01	F : 0.01	

#score	681.4789415267852
#seq	55
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF517ECT_IGF2BP1_UTR_m2_run1.txt

#BEAR
ff!!ddddcccooooooccc333dddd22	chr22:38245954-38246170(+)$1	216	9	38	14.6938
fffff[a[cccooooooccc]a]ffffff	chr9:100777767-100778037(+)$1	270	162	191	14.6767
ggggg"""cccooooooccc]ggggggg2	chr20:30782643-30782910(-)$1	267	223	252	16.3731
f!!ccc[ddddoooooodddd333ccc22	chr8:17914613-17914877(-)$1	264	72	101	14.1917
"eeeee"""bboooooobbeeeee333cc	chr1:12034901-12035195(+)$1	294	199	228	14.1102
ffffff[cccbboooooobb]cccfffff	chr11:119207787-119208054(+)$1	267	89	118	11.7150
:==========oooooo==========::	chr13:113538553-113538800(+)$1	247	162	191	13.4105
ee!!ccc[cccooooooccc]ccc22eee	chr5:179156437-179156706(+)$1	269	217	246	15.4522
=======!!bboooooobb22========	chr2:128949392-128949645(+)$1	253	65	94	15.5996
ee!!==========lll==========22	chr1:230838714-230838936(-)$1	222	88	117	12.0948
ff[ccc"""bboooooobb333ccc]fff	chr19:3550910-3551176(-)$1	266	83	112	15.1746
#dddd[eeeeeooooooeeeeeddddggg	chr3:150261928-150262218(-)$1	290	211	240	11.8330
eeeee[eeeeeooooooeeeee22eeeee	chr3:123210938-123211215(-)$1	277	153	182	12.1138
eeeee"""cccooooooccc333eeeee7	chr17:48459396-48459642(-)$1	246	182	211	15.7724
A==========oooooo==========::	chr9:124101482-124101727(-)$1	245	22	51	13.4915
========[bboooooobb]=========	chr8:109240398-109240626(-)$1	228	149	178	15.5563
ccc[gggggggooooooggggggg]ccc5	chr6:145172972-145173231(+)$1	259	154	183	13.0935
fffff"""cccoooooocccffffff:::	chr3:38022595-38022850(+)$1	255	165	194	12.0188
dddd!!eeeeeooooooeeeee4444ddd	chr7:94295741-94295978(+)$1	237	88	117	12.9279
hhhhbb"""bboooooobb333bb]hhhh	chr2:162849496-162849828(-)$1	332	90	119	12.6207
#ccc####cccmmmmccc4444ccc333c	chr8:144989583-144989829(-)$1	246	45	74	11.0150
dddd[ccccccooooooccc]ccc22ddd	chr3:52558988-52559219(-)$1	231	174	203	14.3816
===========oooooo============	chr20:377533-377849(+)$1	316	143	172	16.3957
dddd!!eeeeeooooooeeeee4444ddd	chr7:94295628-94295936(+)$1	308	201	230	12.9279
=============mmmm============	chr8:101717175-101717384(-)$1	209	52	81	11.8091
g[bb[ffffffooooooffffff]bb]gg	chr19:3123737-3123994(+)$1	257	119	148	11.8738
iiiiiii!!bboooooobb22iiiiiiii	chrX:38547210-38547489(+)$1	279	178	207	14.7370
e!!bb!!bb[aooooooa]bb22bb22ee	chr3:71102682-71103012(-)$1	330	137	166	12.8439
ddddddddcccooooooccc333dddd]d	chr1:9789130-9789400(-)$1	270	165	194	14.0868
d!!dddd[cccoooooocccdddd22ddd	chr3:30734576-30734829(+)$1	253	30	59	13.8680
b!!a[ffffffooooooffffff]a]bb2	chr2:135211034-135211330(+)$1	296	136	165	12.5039
ddccc"""cccooooooccc4444ccc22	chr6:43752273-43752545(+)$1	272	71	100	16.5859
ggggg"""ccc[aooooooa]ccc333gg	chr10:45951544-45951799(-)$1	255	49	78	14.2455
fff[ddddcccooooooccc4444ddddf	chr19:1088412-1088662(-)$1	250	64	93	14.1912
ff[eeeee!!aooooooa22eeeee]fff	chr1:26143157-26143412(+)$1	255	186	215	12.4093
a!!ccc!!cccooooooccc4444ccc22	chr8:101721596-101721815(-)$1	219	37	66	16.8394
=!!ccc[ccccccmmmmccc]ccc333cc	chr3:186796100-186796325(+)$1	225	59	88	11.2748
!!ccc"""cccooooooccc4444ccc]e	chr19:35514055-35514336(+)$1	281	114	143	17.1373
"""ffffff[aooooooa]ffffff22cc	chr17:26880543-26880845(-)$1	302	12	41	12.9348
[ffffff[cccoooooocccffffff333	chr22:47082322-47082603(-)$1	281	224	253	14.3458
=========[aooooooa===========	chr11:34121353-34121611(+)$1	258	2	31	16.3133
a!!ccc!!cccooooooccc4444ccc22	chr8:101721586-101721788(-)$1	202	10	39	16.8394
f!!bb[eeeeeooooooeeeee]bb22ff	chr12:53861488-53861691(+)$1	203	25	54	12.3685
eeee"""bb[bboooooobb]bb333eee	chr8:99054837-99055098(-)$1	261	173	202	12.2508
d!!a[bb[cccoooooocccbb]a22ddd	chr20:628635-628914(-)$1	279	62	91	14.2390
d[accc!!cccooooooccc]ccc]a]dd	chr2:20401582-20401842(-)$1	260	211	240	15.8275
=============mmmm============	chr1:109852558-109852819(-)$1	261	13	42	11.8091
=============lll=============	chr7:10973075-10973348(-)$1	273	209	238	12.4787
b[ccc"""cccooooooccc22ccc22bb	chr19:40739705-40739957(-)$1	252	130	159	15.6437
""eeeee[cccooooooccc333eeeee4	chr9:111637112-111637352(-)$1	240	62	91	15.5507
!!ccc"""bboooooobbccc]ccc]fff	chr11:120100284-120100561(+)$1	277	185	214	13.4231
[eeeee!!cccooooooccc333eeeee]	chr22:42301935-42302184(+)$1	249	205	234	15.9154
ggg####ddddooooooddddggggggg:	chr1:43392132-43392356(-)$1	224	118	147	12.4585
eeeee"""cccooooooccc4444eeeee	chr7:94295038-94295290(+)$1	252	37	66	16.1617

#otherMatches

#Seq PSSM
UGAGCGUUUUGAAUUCACGACUUGGCGGC	chr22:38245954-38246170(+)$1	216	9	38	14.6938
CAAAAUUGUAAGCGUUGUUAGGUUUUUGU	chr9:100777767-100778037(+)$1	270	162	191	14.6767
CAGGGACCUCCACUGUGGGACCCUUGAGA	chr20:30782643-30782910(-)$1	267	223	252	16.3731
AAUUCACUGAGUUUUGUUUCACUUUGACA	chr8:17914613-17914877(-)$1	264	72	101	14.1917
UUCACUUUUACUGCUUUGUAGUGACUCGU	chr1:12034901-12035195(+)$1	294	199	228	14.1102
UCUGUCUCUCCCUGGCAUGGAGAGGGCAG	chr11:119207787-119208054(+)$1	267	89	118	11.7150
AGUGUGAAAGUCACUAAACUUUUACACAC	chr13:113538553-113538800(+)$1	247	162	191	13.4105
UGUUUCUUCUUUCUUUUAAGCAGACCCAU	chr5:179156437-179156706(+)$1	269	217	246	15.4522
UGUUCAAGCUGCAUCUUCACAUUGAAUGA	chr2:128949392-128949645(+)$1	253	65	94	15.5996
GCCCCUGGCCUUUGAGGCAAAGGCCAGCA	chr1:230838714-230838936(-)$1	222	88	117	12.0948
CGUUCAUCGUGAUCUUCCAGUUUGGCUGG	chr19:3550910-3551176(-)$1	266	83	112	15.1746
AGAUACAGUAGUGGACCCUACUUAUUCAG	chr3:150261928-150262218(-)$1	290	211	240	11.8330
GCAGUAGUGCUUUUGUCAGCACAGACUGC	chr3:123210938-123211215(-)$1	277	153	182	12.1138
UAAUUUUAGAGCAUUAACUCCCUAAUUGC	chr17:48459396-48459642(-)$1	246	182	211	15.7724
CAGUGCAACUUAAACUCAAGUUGCACUUA	chr9:124101482-124101727(-)$1	245	22	51	13.4915
UAAUUUUGGCUUUGUUUAGAUAAAAUUAC	chr8:109240398-109240626(-)$1	228	149	178	15.5563
AUUGUCUUUGGUUCCCUUCAAAGAGAAUU	chr6:145172972-145173231(+)$1	259	154	183	13.0935
UUUUGAAUGUUAUUUUAAGCCGAGAGUUA	chr3:38022595-38022850(+)$1	255	165	194	12.0188
CUGGUAACCAGAGAUUACUGGUGGCUCCA	chr7:94295741-94295978(+)$1	237	88	117	12.9279
UAUCUCAAAACUGCACUGUCAAGAUGAUG	chr2:162849496-162849828(-)$1	332	90	119	12.6207
UGGCCUCCGGCGUCAGCCUCCAGCCUCUG	chr8:144989583-144989829(-)$1	246	45	74	11.0150
CACGGAGCAGUACAUGCACUCGCUGACGU	chr3:52558988-52559219(-)$1	231	174	203	14.3816
ACCAGUGUCGGCCUCCACUGAUGCUGGUG	chr20:377533-377849(+)$1	316	143	172	16.3957
CUGGUAACCAGAGAUUACUGGUGGCUCCA	chr7:94295628-94295936(+)$1	308	201	230	12.9279
AAAAACUUUUUUUUAUUGAAGGGAGUUUU	chr8:101717175-101717384(-)$1	209	52	81	11.8091
GAGGGGCUGAGGAGCGGCUCAGUGUCACC	chr19:3123737-3123994(+)$1	257	119	148	11.8738
UUUUGUGAAGCCCUGUUGUGCCACAGAGU	chrX:38547210-38547489(+)$1	279	178	207	14.7370
AAAUGCAGCAGAUCCUCCAGCAACAAGUG	chr3:71102682-71103012(-)$1	330	137	166	12.8439
GUCCCUGUAGCUGCUCUGUUUAGACAGCG	chr1:9789130-9789400(-)$1	270	165	194	14.0868
AAGGGGAACUCCUUUAAGGGUCUCAGUUA	chr3:30734576-30734829(+)$1	253	30	59	13.8680
CUUUGCCGGCCCCUACAGGCUGGGGUGGC	chr2:135211034-135211330(+)$1	296	136	165	12.5039
UCUCUCACCAGGAAAGACUGAUACAGAAC	chr6:43752273-43752545(+)$1	272	71	100	16.5859
GCACAUCCAGCCCGUGCCUGUGUUCACUG	chr10:45951544-45951799(-)$1	255	49	78	14.2455
CUCCACCCACGUUCUCCCGUCCUGGGGUG	chr19:1088412-1088662(-)$1	250	64	93	14.1912
GUCCAGCUUGAUGUCUUUGCAGCUGCACC	chr1:26143157-26143412(+)$1	255	186	215	12.4093
GAAUGGCAAGUGUACGAGCUGUUCCCAAC	chr8:101721596-101721815(-)$1	219	37	66	16.8394
UCUUCUUUGAUAGCCAUCUAUUCAUCUGG	chr3:186796100-186796325(+)$1	225	59	88	11.2748
GCUCUUCUACCGCCUCUGGUCCCUGGAAA	chr19:35514055-35514336(+)$1	281	114	143	17.1373
CUAGCCCCUGCUGUCAUGAAGGGGCCAGG	chr17:26880543-26880845(-)$1	302	12	41	12.9348
GGGAGCAUGACCUUGGCGUCUGUUCUGGG	chr22:47082322-47082603(-)$1	281	224	253	14.3458
AGUGUGGUUUGGCAGAACAACUGCAUUUC	chr11:34121353-34121611(+)$1	258	2	31	16.3133
GAAUGGCAAGUGUACGAGCUGUUCCCAAC	chr8:101721586-101721788(-)$1	202	10	39	16.8394
UUCUGUAUAAGGAAUAACUUGUCCGAUAG	chr12:53861488-53861691(+)$1	203	25	54	12.3685
CACAGCAUGCGGAAAAUACUACAGAGUGU	chr8:99054837-99055098(-)$1	261	173	202	12.2508
ucagugcucguuacuucauggucccaaga	chr20:628635-628914(-)$1	279	62	91	14.2390
UGCCACGUUGGAGAAGCCCGUGUGAGAAG	chr2:20401582-20401842(-)$1	260	211	240	15.8275
auauauguguguguacauauauacauaua	chr1:109852558-109852819(-)$1	261	13	42	11.8091
UAUUGUAAUCUCUAUUGGAGAUUACAAUG	chr7:10973075-10973348(-)$1	273	209	238	12.4787
GCGGACCCACUUCCCCCAGUUCUCCUACU	chr19:40739705-40739957(-)$1	252	130	159	15.6437
AUUAGAUAAUCUUUGCUGAUACAGUCUAU	chr9:111637112-111637352(-)$1	240	62	91	15.5507
CCGGACCUGGACGUUGCCUCCAGAGCAGG	chr11:120100284-120100561(+)$1	277	185	214	13.4231
UGAUGCGAGGCUGAGUUGCUGUAGCGUCU	chr22:42301935-42302184(+)$1	249	205	234	15.9154
UGGAUCUCCCCACUCUAGGGGUCAGGCUC	chr1:43392132-43392356(-)$1	224	118	147	12.4585
UUAGGCUACUGUAUCUUCAGGCCACCUGA	chr7:94295038-94295290(+)$1	252	37	66	16.1617

#DB
((..(((((((......)))...))))..	chr22:38245954-38246170(+)$1	1	9	38	14.6938
(((((.(.(((......))).).))))))	chr9:100777767-100778037(+)$1	1	162	191	14.6767
(((((...(((......))).))))))).	chr20:30782643-30782910(-)$1	1	223	252	16.3731
(..(((.((((......))))...)))..	chr8:17914613-17914877(-)$1	1	72	101	14.1917
.(((((...((......)))))))...))	chr1:12034901-12035195(+)$1	1	199	228	14.1102
((((((.(((((......)).))))))))	chr11:119207787-119208054(+)$1	1	89	118	11.7150
.((((((((((......))))))))))..	chr13:113538553-113538800(+)$1	1	162	191	13.4105
((..(((.(((......))).)))..)))	chr5:179156437-179156706(+)$1	1	217	246	15.4522
(((((((..((......))..))))))))	chr2:128949392-128949645(+)$1	1	65	94	15.5996
((..((((((((((...))))))))))..	chr1:230838714-230838936(-)$1	1	88	117	12.0948
((.(((...((......))...))).)))	chr19:3550910-3551176(-)$1	1	83	112	15.1746
.((((.(((((......))))))))))))	chr3:150261928-150262218(-)$1	1	211	240	11.8330
(((((.(((((......)))))..)))))	chr3:123210938-123211215(-)$1	1	153	182	12.1138
(((((...(((......)))...))))).	chr17:48459396-48459642(-)$1	1	182	211	15.7724
(((((((((((......))))))))))..	chr9:124101482-124101727(-)$1	1	22	51	13.4915
((((((((.((......)).)))))))))	chr8:109240398-109240626(-)$1	1	149	178	15.5563
(((.(((((((......))))))).))).	chr6:145172972-145173231(+)$1	1	154	183	13.0935
(((((...(((......)))))))))...	chr3:38022595-38022850(+)$1	1	165	194	12.0188
((((..(((((......)))))....)))	chr7:94295741-94295978(+)$1	1	88	117	12.9279
((((((...((......))...)).))))	chr2:162849496-162849828(-)$1	1	90	119	12.6207
.(((....(((....)))....)))...)	chr8:144989583-144989829(-)$1	1	45	74	11.0150
((((.((((((......))).)))..)))	chr3:52558988-52559219(-)$1	1	174	203	14.3816
(((((((((((......))))))))))))	chr20:377533-377849(+)$1	1	143	172	16.3957
((((..(((((......)))))....)))	chr7:94295628-94295936(+)$1	1	201	230	12.9279
(((((((((((((....))))))))))))	chr8:101717175-101717384(-)$1	1	52	81	11.8091
(.((.((((((......)))))).)).))	chr19:3123737-3123994(+)$1	1	119	148	11.8738
(((((((..((......))..))))))))	chrX:38547210-38547489(+)$1	1	178	207	14.7370
(..((..((.(......).))..))..))	chr3:71102682-71103012(-)$1	1	137	166	12.8439
(((((((((((......)))...)))).)	chr1:9789130-9789400(-)$1	1	165	194	14.0868
(..((((.(((......)))))))..)))	chr3:30734576-30734829(+)$1	1	30	59	13.8680
(..(.((((((......)))))).).)).	chr2:135211034-135211330(+)$1	1	136	165	12.5039
(((((...(((......)))....)))..	chr6:43752273-43752545(+)$1	1	71	100	16.5859
(((((...(((.(......).)))...))	chr10:45951544-45951799(-)$1	1	49	78	14.2455
(((.(((((((......)))....)))))	chr19:1088412-1088662(-)$1	1	64	93	14.1912
((.(((((..(......)..))))).)))	chr1:26143157-26143412(+)$1	1	186	215	12.4093
(..(((..(((......)))....)))..	chr8:101721596-101721815(-)$1	1	37	66	16.8394
(..(((.((((((....))).)))...))	chr3:186796100-186796325(+)$1	1	59	88	11.2748
..(((...(((......)))....))).)	chr19:35514055-35514336(+)$1	1	114	143	17.1373
...((((((.(......).))))))..))	chr17:26880543-26880845(-)$1	1	12	41	12.9348
.((((((.(((......)))))))))...	chr22:47082322-47082603(-)$1	1	224	253	14.3458
(((((((((.(......))))))))))))	chr11:34121353-34121611(+)$1	1	2	31	16.3133
(..(((..(((......)))....)))..	chr8:101721586-101721788(-)$1	1	10	39	16.8394
(..((.(((((......))))).))..))	chr12:53861488-53861691(+)$1	1	25	54	12.3685
((((...((.((......)).))...)))	chr8:99054837-99055098(-)$1	1	173	202	12.2508
(..(.((.(((......))))).)..)))	chr20:628635-628914(-)$1	1	62	91	14.2390
(.((((..(((......))).))).).))	chr2:20401582-20401842(-)$1	1	211	240	15.8275
(((((((((((((....))))))))))))	chr1:109852558-109852819(-)$1	1	13	42	11.8091
(((((((((((((...)))))))))))))	chr7:10973075-10973348(-)$1	1	209	238	12.4787
(.(((...(((......)))..)))..))	chr19:40739705-40739957(-)$1	1	130	159	15.6437
..(((((.(((......)))...))))).	chr9:111637112-111637352(-)$1	1	62	91	15.5507
..(((...((......))))).))).)))	chr11:120100284-120100561(+)$1	1	185	214	13.4231
.(((((..(((......)))...))))).	chr22:42301935-42302184(+)$1	1	205	234	15.9154
(((....((((......))))))))))).	chr1:43392132-43392356(-)$1	1	118	147	12.4585
(((((...(((......)))....)))))	chr7:94295038-94295290(+)$1	1	37	66	16.1617

#PSSM
f : 0.16	= : 0.14	d : 0.14	e : 0.12	g : 0.07	" : 0.05	# : 0.03	b : 0.03	a : 0.03	! : 0.03	[ : 0.03	: : 0.01	A : 0.01	c : 0.01	h : 0.01	i : 0.01	
! : 0.20	= : 0.16	f : 0.14	e : 0.14	d : 0.11	g : 0.05	[ : 0.05	c : 0.03	" : 0.03	h : 0.01	i : 0.01	
! : 0.22	= : 0.16	e : 0.12	c : 0.11	f : 0.09	d : 0.09	g : 0.05	[ : 0.03	h : 0.01	b : 0.01	i : 0.01	" : 0.01	a : 0.01	
c : 0.20	= : 0.16	e : 0.14	d : 0.11	f : 0.09	! : 0.05	b : 0.05	g : 0.03	[ : 0.03	a : 0.03	h : 0.01	i : 0.01	# : 0.01	
c : 0.20	= : 0.18	e : 0.12	d : 0.09	f : 0.09	[ : 0.07	g : 0.05	b : 0.05	! : 0.03	# : 0.03	i : 0.01	" : 0.01	
" : 0.18	= : 0.18	c : 0.14	f : 0.09	d : 0.07	[ : 0.07	e : 0.07	! : 0.05	b : 0.03	# : 0.03	g : 0.01	i : 0.01	
" : 0.24	= : 0.18	e : 0.12	! : 0.09	d : 0.07	f : 0.07	[ : 0.05	c : 0.03	# : 0.03	a : 0.01	g : 0.01	i : 0.01	b : 0.01	
" : 0.22	= : 0.16	[ : 0.11	! : 0.11	e : 0.11	d : 0.09	c : 0.05	f : 0.05	b : 0.03	g : 0.01	# : 0.01	
c : 0.46	= : 0.14	e : 0.09	" : 0.05	! : 0.05	f : 0.05	b : 0.05	d : 0.03	[ : 0.01	g : 0.01	
c : 0.46	b : 0.12	= : 0.12	e : 0.09	[ : 0.07	d : 0.03	f : 0.03	g : 0.01	! : 0.01	
c : 0.44	b : 0.14	= : 0.12	e : 0.09	a : 0.07	d : 0.03	f : 0.03	g : 0.01	o : 0.01	
o : 0.83	= : 0.07	b : 0.03	m : 0.01	[ : 0.01	c : 0.01	
o : 0.87	= : 0.07	m : 0.01	a : 0.01	c : 0.01	
o : 0.88	m : 0.07	= : 0.01	l : 0.01	
o : 0.88	m : 0.07	l : 0.03	
o : 0.88	m : 0.05	l : 0.03	c : 0.01	
o : 0.87	m : 0.05	l : 0.01	c : 0.01	= : 0.01	b : 0.01	
c : 0.42	b : 0.12	= : 0.12	e : 0.09	a : 0.07	o : 0.05	d : 0.03	f : 0.03	g : 0.01	
c : 0.42	b : 0.14	= : 0.14	e : 0.09	d : 0.03	f : 0.03	] : 0.03	g : 0.01	4 : 0.01	o : 0.01	2 : 0.01	
c : 0.42	= : 0.14	e : 0.11	b : 0.05	2 : 0.05	f : 0.05	d : 0.03	3 : 0.03	] : 0.01	g : 0.01	4 : 0.01	a : 0.01	
] : 0.16	= : 0.16	3 : 0.12	e : 0.12	4 : 0.12	f : 0.09	d : 0.05	2 : 0.05	b : 0.03	g : 0.01	c : 0.01	
= : 0.18	3 : 0.14	e : 0.12	4 : 0.12	c : 0.11	f : 0.09	g : 0.05	2 : 0.03	b : 0.03	a : 0.01	i : 0.01	d : 0.01	] : 0.01	
c : 0.18	= : 0.18	4 : 0.14	3 : 0.11	f : 0.09	] : 0.05	g : 0.05	e : 0.03	d : 0.03	2 : 0.03	b : 0.03	i : 0.01	
c : 0.18	= : 0.18	4 : 0.14	e : 0.09	d : 0.07	f : 0.07	g : 0.05	b : 0.05	3 : 0.03	] : 0.03	2 : 0.01	i : 0.01	a : 0.01	
= : 0.18	c : 0.16	e : 0.11	f : 0.09	d : 0.07	3 : 0.07	2 : 0.07	] : 0.05	b : 0.05	g : 0.03	4 : 0.03	i : 0.01	a : 0.01	
= : 0.18	2 : 0.14	c : 0.11	3 : 0.09	e : 0.09	d : 0.07	f : 0.07	] : 0.07	g : 0.03	4 : 0.03	h : 0.01	b : 0.01	i : 0.01	a : 0.01	
= : 0.18	d : 0.14	e : 0.12	c : 0.11	f : 0.09	3 : 0.09	2 : 0.07	g : 0.05	] : 0.03	: : 0.01	h : 0.01	i : 0.01	b : 0.01	
e : 0.14	= : 0.12	d : 0.12	2 : 0.11	f : 0.11	g : 0.09	c : 0.07	: : 0.05	3 : 0.03	] : 0.03	b : 0.03	h : 0.01	i : 0.01	
2 : 0.14	f : 0.12	= : 0.12	d : 0.12	e : 0.11	c : 0.07	: : 0.07	g : 0.05	7 : 0.01	5 : 0.01	h : 0.01	i : 0.01	3 : 0.01	b : 0.01	4 : 0.01	] : 0.01	

#score	754.6089288311887
#seq	54
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_UTR_m1_run2.txt

#BEAR
cc[bbyyyyyyyyyyyyyyyybb]ccc	chr9:95297999-95298333(+)$1	334	54	81	15.5883
ff^^^^^^^^^^^^^^^^^^^ffffff	chr19:39220689-39220942(+)$1	253	32	59	13.3136
"eeeee[bbuuuuuuuuuuuubbeeee	chr6:111216018-111216314(+)$1	296	236	263	17.8407
ccc!!eeeeesssssssssseeeee]c	chr2:178085468-178085679(+)$1	211	75	102	13.8725
ee[ddddbb^^^^^^^^^^^^^^^^^^	chrX:110931139-110931398(+)$1	259	69	96	14.5570
ggggg:cccvvvvvvvvvvvvvccc::	chr5:40826123-40826381(-)$1	258	57	84	15.3919
==========ssssssssss=======	chr4:1943239-1943506(+)$1	267	138	165	15.5829
ff[cccyyyyyyyyyyyyyyyyccc]f	chr17:27583281-27583567(-)$1	286	51	78	16.8983
ccc!!eeeeesssssssssseeeee]c	chr2:178085461-178085668(+)$1	207	82	109	13.8725
=========ttttttttttt=======	chr15:34671240-34671506(-)$1	266	176	203	18.7116
iiiiiiiiissssssssssiiiiiiii	chr12:22841057-22841308(+)$1	251	64	91	14.9819
=========^^^^^^^^^^^^^^^^^^	chr7:66420998-66421301(+)$1	303	44	71	16.1373
gggggg[ddddrrrrrrrrrdddd]gg	chr5:110833265-110833565(-)$1	300	27	54	10.2643
eeeee[cccrrrrrrrrrccceeeee:	chr19:1435005-1435225(+)$1	220	113	140	10.6546
==========rrrrrrrrr========	chr1:93619260-93619517(-)$1	257	147	174	12.5849
ffffff[bbvvvvvvvvvvvvvbb]ff	chr21:38471281-38471593(+)$1	312	98	125	16.7900
!dddd!!cccssssssssssccc333d	chr15:34817437-34817732(-)$1	295	52	79	14.3977
gggggggvvvvvvvvvvvvvggggggg	chrX:135956575-135956803(-)$1	228	169	196	17.1432
c[cccdddd^^^^^^^^^^^^^^^^^^	chr20:57486083-57486332(+)$1	249	65	92	14.7675
=========ssssssssss========	chr7:44048987-44049274(-)$1	287	71	98	15.9181
eeeee[cccrrrrrrrrrccceeeee:	chr19:1434988-1435205(+)$1	217	130	157	10.6546
gg[ffffff^^^^^^^^^^^^^^^^^^	chr2:178087689-178087945(+)$1	256	143	170	14.7947
:eeeee[bbssssssssssbb]eeeee	chr4:762599-762850(-)$1	251	219	246	13.2142
fffffddddxxxxxxxxxxxxxxxddd	chr9:114985260-114985487(-)$1	227	105	132	14.4801
hhhhhhh^^^^^^^^^^^^^^^^^^^^	chr2:178088247-178088483(+)$1	236	57	84	14.0785
:dddd[ccctttttttttttccc]ddd	chr15:49032587-49032892(-)$1	305	218	245	15.7850
ddgggggggrrrrrrrrrggggggg]d	chr22:19428900-19429140(-)$1	240	174	201	10.5400
iiiiiiiiissssssssssiiiiiiii	chr5:917850-918218(+)$1	368	183	210	14.9819
ffffff[auuuuuuuuuuuua]fffff	chr1:21102001-21102260(-)$1	259	19	46	17.4547
e[gggggggssssssssssggggggge	chr8:126034268-126034492(+)$1	224	80	107	14.4583
:eeeee[bbssssssssssbb]eeeee	chr4:762434-762675(-)$1	241	44	71	13.2142
e[ccc[cccrrrrrrrrrccc22ccc]	chr15:83697324-83697635(-)$1	311	121	148	11.3755
""a[eeeeewwwwwwwwwwwwwweeee	chr7:26229492-26229759(-)$1	267	124	151	18.0597
eee:eeeeevvvvvvvvvvvvveeeee	chr7:26229787-26230067(-)$1	280	79	106	16.2814
#bb"""cccwwwwwwwwwwwwwwccc2	chr16:89017732-89018016(-)$1	284	170	197	17.8079
ff22bbcccyyyyyyyyyyyyyyyycc	chr2:175006448-175006754(-)$1	306	168	195	15.7158
ggg^^^^^^^^^^^^^^^^^^^^gggg	chr1:241793093-241793333(-)$1	240	207	234	14.9089
ff####cccssssssssssccc4444f	chrX:135956554-135956775(-)$1	221	41	68	14.9981

#otherMatches

#Seq PSSM
AUCGUGAAAAAAACAAACAGAAUAAUG	chr9:95297999-95298333(+)$1	334	54	81	15.5883
CUaagaaccaaaaaaaaaaaaggaaaa	chr19:39220689-39220942(+)$1	253	32	59	13.3136
AUUCUCUGGGAUUUUAAGGAACUGAGA	chr6:111216018-111216314(+)$1	296	236	263	17.8407
GGUCAUAUAUACAUAUAUUAAUAUAAA	chr2:178085468-178085679(+)$1	211	75	102	13.8725
GUUGUUGGAUUACAAAAAUAAACACUA	chrX:110931139-110931398(+)$1	259	69	96	14.5570
UAGCUCUGCAAAUAAACAUCUAGCAAA	chr5:40826123-40826381(-)$1	258	57	84	15.3919
GUGAUGCAUAGAUCCCAUAGUGUGCAU	chr4:1943239-1943506(+)$1	267	138	165	15.5829
GACACAGCAAAACCCUUCUAUAUGUAU	chr17:27583281-27583567(-)$1	286	51	78	16.8983
GGUCAUAUAUACAUAUAUUAAUAUAAA	chr2:178085461-178085668(+)$1	207	82	109	13.8725
UGGCAUUAUUGACUGCUGAUGUGAUGC	chr15:34671240-34671506(-)$1	266	176	203	18.7116
UCUAAUUUCCAUAUAUACAGAAAUUAG	chr12:22841057-22841308(+)$1	251	64	91	14.9819
CAGGAAACAUACCUUAAGuuuuuuuug	chr7:66420998-66421301(+)$1	303	44	71	16.1373
AUGAUUCUAAGCUCAGGAAUCUUGUGA	chr5:110833265-110833565(-)$1	300	27	54	10.2643
AAGUCACUGGUUCAACAACAGGGUUUA	chr19:1435005-1435225(+)$1	220	113	140	10.6546
AAUCAUGUUAUGUUAAUUUUAACAUGA	chr1:93619260-93619517(-)$1	257	147	174	12.5849
UUUAAUACUAGAAAGGAAUAAAAGGGU	chr21:38471281-38471593(+)$1	312	98	125	16.7900
AGGAAAAGUAGAGAAAGAAAUGCCAAU	chr15:34817437-34817732(-)$1	295	52	79	14.3977
UUACCUGACCAUUGACCCUGCAGGUAA	chrX:135956575-135956803(-)$1	228	169	196	17.1432
AGCAAACAAAUAAAAUGAAAUAAAAGA	chr20:57486083-57486332(+)$1	249	65	92	14.7675
auuuaaauaaauaaaauaauauuuaaa	chr7:44048987-44049274(-)$1	287	71	98	15.9181
AAGUCACUGGUUCAACAACAGGGUUUA	chr19:1434988-1435205(+)$1	217	130	157	10.6546
CUAGUUUCUAAAUUAUCAAUUCCCUAC	chr2:178087689-178087945(+)$1	256	143	170	14.7947
AAAGCUACUCAAAGUAAAAAGAAGCUU	chr4:762599-762850(-)$1	251	219	246	13.2142
AUUAGGAAAAAAUCAUGUUUUAAAUUU	chr9:114985260-114985487(-)$1	227	105	132	14.4801
GUUUUAAGAGUUCCAGUAUAUAAUAAU	chr2:178088247-178088483(+)$1	236	57	84	14.0785
GUAGUUUGAAacaucaacaaucacacu	chr15:49032587-49032892(-)$1	305	218	245	15.7850
AUUAUUGUUGAAAUACAAAACAAUAUG	chr22:19428900-19429140(-)$1	240	174	201	10.5400
UGUUUUGCUUUUAUCUCACAGUAAAAU	chr5:917850-918218(+)$1	368	183	210	14.9819
uacuguaggcaguuauaacacaacggu	chr1:21102001-21102260(-)$1	259	19	46	17.4547
UAUGUAAAUACAUGCUUUAAUUUGCAA	chr8:126034268-126034492(+)$1	224	80	107	14.4583
AAAGCUACUCAAAGUAAAAAGAAGCUU	chr4:762434-762675(-)$1	241	44	71	13.2142
auugaacauguugauggaauggaucau	chr15:83697324-83697635(-)$1	311	121	148	11.3755
UGCAUAUUUUAAUAUUAACAGGUAAAU	chr7:26229492-26229759(-)$1	267	124	151	18.0597
UGUUGGUGCCUUCAUUUAAAAAGCACU	chr7:26229787-26230067(-)$1	280	79	106	16.2814
AAGAAGGUGAAAAUAAAAUAAGACGCA	chr16:89017732-89018016(-)$1	284	170	197	17.8079
GAGAGGAGGAGAUAAAAAACUAAAACC	chr2:175006448-175006754(-)$1	306	168	195	15.7158
AUAAGCCAAUGGAAAGAAAGAAAUAUU	chr1:241793093-241793333(-)$1	240	207	234	14.9089
UAAAACCUCCCACCCAGUUGAGAAAGU	chrX:135956554-135956775(-)$1	221	41	68	14.9981

#DB
((.((................)).)))	chr9:95297999-95298333(+)$1	1	54	81	15.5883
((...................))))))	chr19:39220689-39220942(+)$1	1	32	59	13.3136
.(((((.((............))))))	chr6:111216018-111216314(+)$1	1	236	263	17.8407
(((..(((((..........))))).)	chr2:178085468-178085679(+)$1	1	75	102	13.8725
((.((((((..................	chrX:110931139-110931398(+)$1	1	69	96	14.5570
))))).(((.............)))..	chr5:40826123-40826381(-)$1	1	57	84	15.3919
((((((((((..........)))))))	chr4:1943239-1943506(+)$1	1	138	165	15.5829
((.(((................))).)	chr17:27583281-27583567(-)$1	1	51	78	16.8983
(((..(((((..........))))).)	chr2:178085461-178085668(+)$1	1	82	109	13.8725
(((((((((...........)))))))	chr15:34671240-34671506(-)$1	1	176	203	18.7116
(((((((((..........))))))))	chr12:22841057-22841308(+)$1	1	64	91	14.9819
(((((((((..................	chr7:66420998-66421301(+)$1	1	44	71	16.1373
((((((.((((.........)))).))	chr5:110833265-110833565(-)$1	1	27	54	10.2643
(((((.(((.........)))))))).	chr19:1435005-1435225(+)$1	1	113	140	10.6546
((((((((((.........))))))))	chr1:93619260-93619517(-)$1	1	147	174	12.5849
((((((.((.............)).))	chr21:38471281-38471593(+)$1	1	98	125	16.7900
.((((..(((..........)))...)	chr15:34817437-34817732(-)$1	1	52	79	14.3977
(((((((.............)))))))	chrX:135956575-135956803(-)$1	1	169	196	17.1432
(.(((((((..................	chr20:57486083-57486332(+)$1	1	65	92	14.7675
(((((((((..........))))))))	chr7:44048987-44049274(-)$1	1	71	98	15.9181
(((((.(((.........)))))))).	chr19:1434988-1435205(+)$1	1	130	157	10.6546
((.((((((..................	chr2:178087689-178087945(+)$1	1	143	170	14.7947
.(((((.((..........)).)))))	chr4:762599-762850(-)$1	1	219	246	13.2142
)))))((((...............)))	chr9:114985260-114985487(-)$1	1	105	132	14.4801
(((((((....................	chr2:178088247-178088483(+)$1	1	57	84	14.0785
.((((.(((...........))).)))	chr15:49032587-49032892(-)$1	1	218	245	15.7850
(((((((((.........))))))).)	chr22:19428900-19429140(-)$1	1	174	201	10.5400
(((((((((..........))))))))	chr5:917850-918218(+)$1	1	183	210	14.9819
((((((.(............).)))))	chr1:21102001-21102260(-)$1	1	19	46	17.4547
(.(((((((..........))))))))	chr8:126034268-126034492(+)$1	1	80	107	14.4583
.(((((.((..........)).)))))	chr4:762434-762675(-)$1	1	44	71	13.2142
(.(((.(((.........)))..))).	chr15:83697324-83697635(-)$1	1	121	148	11.3755
..(.(((((..............))))	chr7:26229492-26229759(-)$1	1	124	151	18.0597
))).(((((.............)))))	chr7:26229787-26230067(-)$1	1	79	106	16.2814
.((...(((..............))).	chr16:89017732-89018016(-)$1	1	170	197	17.8079
))..))(((................))	chr2:175006448-175006754(-)$1	1	168	195	15.7158
(((....................))))	chr1:241793093-241793333(-)$1	1	207	234	14.9089
((....(((..........)))....)	chrX:135956554-135956775(-)$1	1	41	68	14.9981

#PSSM
f : 0.18	e : 0.15	g : 0.13	= : 0.13	c : 0.10	: : 0.07	" : 0.05	i : 0.05	! : 0.02	h : 0.02	d : 0.02	# : 0.02	
f : 0.18	e : 0.18	g : 0.13	= : 0.13	c : 0.07	d : 0.07	[ : 0.07	i : 0.05	h : 0.02	" : 0.02	b : 0.02	
e : 0.15	g : 0.15	= : 0.13	[ : 0.10	c : 0.10	f : 0.07	i : 0.05	d : 0.05	^ : 0.02	h : 0.02	a : 0.02	b : 0.02	2 : 0.02	# : 0.02	
e : 0.13	g : 0.13	= : 0.13	f : 0.10	d : 0.07	c : 0.07	^ : 0.05	! : 0.05	i : 0.05	b : 0.02	h : 0.02	[ : 0.02	: : 0.02	" : 0.02	2 : 0.02	# : 0.02	
e : 0.18	g : 0.13	= : 0.13	f : 0.10	d : 0.07	c : 0.07	b : 0.05	^ : 0.05	! : 0.05	i : 0.05	h : 0.02	" : 0.02	# : 0.02	
e : 0.18	= : 0.13	g : 0.10	[ : 0.10	d : 0.07	f : 0.07	^ : 0.05	i : 0.05	y : 0.02	: : 0.02	c : 0.02	! : 0.02	h : 0.02	" : 0.02	b : 0.02	# : 0.02	
c : 0.21	[ : 0.15	= : 0.13	e : 0.10	d : 0.07	g : 0.07	y : 0.05	^ : 0.05	i : 0.05	! : 0.02	f : 0.02	h : 0.02	
c : 0.23	b : 0.13	= : 0.13	e : 0.10	^ : 0.07	d : 0.07	y : 0.05	i : 0.05	g : 0.05	v : 0.02	f : 0.02	a : 0.02	
c : 0.23	b : 0.13	= : 0.13	e : 0.10	^ : 0.07	d : 0.07	y : 0.05	i : 0.05	g : 0.05	v : 0.02	f : 0.02	u : 0.02	
^ : 0.18	s : 0.18	v : 0.10	r : 0.10	y : 0.07	u : 0.05	e : 0.05	= : 0.05	t : 0.05	w : 0.05	d : 0.02	c : 0.02	x : 0.02	
s : 0.28	^ : 0.18	r : 0.13	v : 0.10	y : 0.07	u : 0.05	t : 0.05	w : 0.05	d : 0.02	x : 0.02	
s : 0.28	^ : 0.18	r : 0.15	v : 0.10	y : 0.07	u : 0.05	t : 0.05	w : 0.05	x : 0.02	
s : 0.28	^ : 0.18	r : 0.15	v : 0.10	y : 0.07	u : 0.05	t : 0.05	w : 0.05	x : 0.02	
s : 0.28	^ : 0.18	r : 0.15	v : 0.10	y : 0.07	u : 0.05	t : 0.05	w : 0.05	x : 0.02	
s : 0.28	^ : 0.18	r : 0.15	v : 0.10	y : 0.07	u : 0.05	t : 0.05	w : 0.05	x : 0.02	
s : 0.28	^ : 0.18	r : 0.15	v : 0.10	y : 0.07	u : 0.05	t : 0.05	w : 0.05	x : 0.02	
s : 0.28	^ : 0.18	r : 0.15	v : 0.10	y : 0.07	u : 0.05	t : 0.05	w : 0.05	x : 0.02	
s : 0.28	^ : 0.18	r : 0.15	v : 0.10	y : 0.07	u : 0.05	t : 0.05	w : 0.05	x : 0.02	
s : 0.28	^ : 0.18	v : 0.10	y : 0.07	c : 0.07	u : 0.05	t : 0.05	r : 0.05	w : 0.05	x : 0.02	g : 0.02	
^ : 0.18	s : 0.10	v : 0.10	c : 0.10	y : 0.07	u : 0.05	t : 0.05	i : 0.05	= : 0.05	b : 0.05	g : 0.05	w : 0.05	r : 0.02	x : 0.02	
^ : 0.18	c : 0.15	= : 0.10	y : 0.07	v : 0.07	g : 0.07	e : 0.05	i : 0.05	b : 0.05	w : 0.05	u : 0.02	d : 0.02	x : 0.02	a : 0.02	
^ : 0.15	e : 0.10	= : 0.10	v : 0.07	c : 0.07	g : 0.07	] : 0.07	b : 0.05	y : 0.05	i : 0.05	w : 0.05	f : 0.02	d : 0.02	x : 0.02	2 : 0.02	
e : 0.18	^ : 0.15	c : 0.10	= : 0.10	b : 0.07	g : 0.07	f : 0.05	i : 0.05	w : 0.05	d : 0.02	x : 0.02	2 : 0.02	y : 0.02	4 : 0.02	
e : 0.23	^ : 0.13	c : 0.10	= : 0.10	g : 0.10	] : 0.05	f : 0.05	i : 0.05	d : 0.02	b : 0.02	3 : 0.02	x : 0.02	y : 0.02	4 : 0.02	
e : 0.23	c : 0.13	^ : 0.13	= : 0.10	g : 0.10	f : 0.05	i : 0.05	] : 0.05	d : 0.05	3 : 0.02	y : 0.02	4 : 0.02	
e : 0.18	^ : 0.13	c : 0.10	] : 0.10	= : 0.10	g : 0.10	f : 0.07	i : 0.05	d : 0.05	: : 0.02	3 : 0.02	4 : 0.02	
e : 0.15	f : 0.13	^ : 0.13	c : 0.10	= : 0.10	d : 0.10	: : 0.07	g : 0.07	i : 0.05	] : 0.02	2 : 0.02	

#score	562.0743676768501
#seq	38
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_UTR_m1_run1.txt

#BEAR
c[a[cccbb[ccc[annnnna]cccbb]ccc]a]c	chr3:49758744-49758996(+)$1	252	139	174	11.0217
fffff[ccc[a!!cccnnnnnccc22a22ccc]ff	chr9:67785060-67785384(-)$1	324	92	127	12.2039
ggggccc[ccc[cccccclllccc22ccc]ccccc	chr2:54197760-54198041(-)$1	281	153	188	13.2871
fffff[dddd!!ddddoooooodddd4444ddddf	chr12:123998383-123998636(-)$1	253	55	90	11.1377
eeeeccc"""ccc[bbmmmmbbccc333ccc]eee	chr6:56330850-56331095(-)$1	245	110	145	11.6108
::ccc!!ccc[bb[bboooooobb333bb]ccc22	chr18:19192214-19192503(+)$1	289	180	215	13.4403
ddddccc[bb[eeeeeooooooeeeee]bb]cccg	chr12:123998097-123998362(-)$1	265	195	230	11.2841
ggggggg[eeeee[cccooooooccceeeee4444	chr17:78237331-78237599(+)$1	268	104	139	12.5837
[ccc[ffffff"""bbmmmmbb333ffffffccc3	chr8:117886753-117886997(-)$1	244	145	180	10.7711
::ccc[==========oooooo==========ccc	chr9:79934429-79934687(+)$1	258	197	232	13.6565
[ggggggg[ccc!!a[ammmma]a22ccc]ggggg	chr4:83294796-83295083(-)$1	287	11	46	12.7989
cccffffffccc[cccooooooccc]ccc333fff	chr21:44269611-44269861(-)$1	250	30	65	13.8934
eeea!!ccc"""ddddoooooodddd22ccc22a]	chr9:35072312-35072576(-)$1	264	6	41	12.8307
!!eeeee[ccc[a!!ccclllcccaccceeeee22	chr16:30711941-30712180(+)$1	239	190	225	11.8039
e[adddd[a!!aa!!bbnnnnnbb22a]a22a]dd	chr17:4790341-4790568(+)$1	227	54	89	11.3687
iiiii[ffffff[cccoooooocccffffff4444	chr3:184046322-184046618(+)$1	296	157	192	13.8488
eeee"""ffffff[bboooooobb22ffffff333	chr15:34517152-34517427(+)$1	275	204	239	14.2281
fff####ffffff!!bbnnnnnbb]ffffff4444	chr14:61201413-61201703(+)$1	290	9	44	10.5209
cc!!cccccc[bb!!ccclllccc22bb]ccc]cc	chr9:79930092-79930369(+)$1	277	122	157	12.2192
hhhhhh"""gggggggooooooggggggghhhhhh	chr14:90863424-90863682(+)$1	258	183	218	11.7420
eeeeeeeee[ccc[bboooooobb22ccc]eeeee	chr1:156294724-156294981(-)$1	257	111	146	13.6085
!!bbccc[ccc"""bbmmmmbbcccccc]bb333e	chr4:100495909-100496168(+)$1	259	145	180	11.2848
bb[ffffff####cccooooooccc333ffffff]	chr17:40169267-40169552(-)$1	285	123	158	14.3490
####ccc[bbbb"""ccclllccc333bb]bbccc	chr16:2139265-2139572(-)$1	307	256	291	11.8739
ffffccc!!eeeee[bbnnnnnbb]eeeee]ccc]	chr2:232576509-232576723(+)$1	214	166	201	9.8917
bb"""a!!ccc"""bboooooobb333ccc22a44	chr6:32948592-32948857(+)$1	265	55	90	16.1216
]bbggggggg$$$$$ccclllccc4444ggggggg	chr4:141300168-141300400(+)$1	232	73	108	11.6870
d"""ffffff!!ddddoooooodddd]ffffff22	chr8:9629762-9630032(+)$1	270	80	115	12.1338
==========ccc[bbmmmmbb333ccc]======	chr17:31258243-31258526(+)$1	283	234	269	11.9136
ccc!!a[eeeee[cccooooooccc]eeeee]a22	chr5:76987060-76987334(-)$1	274	148	183	13.9744
[bb[ccc[ccc[a[bboooooobb22a]cccccc]	chrX:20284756-20285018(-)$1	262	181	216	16.3757
ccc[ccc"""cccqqqqqqqqccc333ccc]ccc]	chr3:184049029-184049253(+)$1	224	63	98	10.0601
fbb[ggggggg[ccc[allla]ccc]ggggggg]b	chr12:123997747-123998010(-)$1	263	173	208	12.3153
ggggggg[a[eeeeeooooooeeeeea]ggggggg	chr19:19303600-19304011(+)$1	411	39	74	12.1075
[eeeee[a[dddd[aooooooa]dddd]aeeeee2	chr1:156351969-156352191(+)$1	222	11	46	11.5713
b[a!!eeeee!!a[bboooooobb]a22eeeee22	chr12:49351013-49351329(-)$1	316	78	113	14.0377
:bb[bb[bbccc[cccooooooccc]ccc]bb]bb	chr3:184052986-184053202(+)$1	216	170	205	11.8898
eee[============mmmm============22e	chr10:697633-697887(-)$1	254	60	95	12.2558
!eeeee!!a"""cccnnnnnccc333a22eeeee2	chr3:50155931-50156235(+)$1	304	126	161	11.0931
cc[ccc!!ccc[ccc[annnnna]ccc]ccc22cc	chr2:63821519-63821775(+)$1	256	100	135	11.9066
cc!!ccc[bbeeeeeooooooeeeee333bb]ccc	chr1:22175289-22175512(-)$1	223	38	73	11.8975
hhhhhh[a[gggggggooooooggggggg]a]hhh	chr10:96305506-96305783(+)$1	277	32	67	12.3688
hhhhhhh[bb[a"""ccclllccc333abb]hhhh	chr8:141889492-141889759(-)$1	267	175	210	11.0684
ccc####dddd"""bboooooobb22dddd4444c	chr12:112757047-112757305(-)$1	258	221	256	14.0282
:=============bboooooobb22=========	chr1:179923940-179924305(+)$1	365	128	163	15.3196
i:::============oooooo============:	chr17:53063403-53063733(+)$1	330	236	271	11.7722
%%iiiiiiiii!!cccnnnnnccc22iiiiiiiii	chr1:113231453-113231702(+)$1	249	157	192	12.3445
f####ggggggg!!bboooooobb22ggggggg]f	chr16:2142886-2143171(-)$1	285	242	277	15.2337
deeeeecccbb[cccooooooccc]bb]ccc]eee	chr2:86712752-86713007(+)$1	255	169	204	12.1191
dddddddd[ccc!!bboooooobb]ccc]dddd22	chr14:55369278-55369607(-)$1	329	262	297	12.9390
[bb[==============mmmm=============	chr2:153532960-153533239(-)$1	279	36	71	12.5004
[bb"""dddd!!ddddoooooodddd4444dddd4	chr3:98312230-98312570(-)$1	340	183	218	12.0869
::dddd[ccc"""cccooooooccc22ccc]dddd	chr2:201171076-201171362(+)$1	286	19	54	12.3351
!bb!!ccc!!ggggggglllggggggg333ccc33	chr17:4843821-4844115(+)$1	294	17	52	12.0477
ddd[ccc[a[ccc[cccmmmmcccccc]a]cccdd	chr9:113018592-113018888(-)$1	296	1	36	11.7228
gggg!!ffffff!!cccmmmmccc333ffffff22	chr13:77765771-77766037(-)$1	266	135	170	12.3574

#otherMatches

#Seq PSSM
GCCCAGCCAUGGCCCUAAUUGUGCCUGAGCUUGAC	chr3:49758744-49758996(+)$1	252	139	174	11.0217
UUAAGGCUGCAGACUAGGAAAUGGGAUUCCAGGUU	chr9:67785060-67785384(-)$1	324	92	127	12.2039
cccccggagccgggcgggcgucccgagccgggccc	chr2:54197760-54198041(-)$1	281	153	188	13.2871
gauagugcugcugugaacuuuguCACUUAACAGUC	chr12:123998383-123998636(-)$1	253	55	90	11.1377
CUCCCAGCAACUGCGACUGGUCCGGAUCCUGCGGA	chr6:56330850-56331095(-)$1	245	110	145	11.6108
AGCUCGUGAGGUGAGGGAGUGACCAAGCAGCUCUG	chr18:19192214-19192503(+)$1	289	180	215	13.4403
UGUUGUGAGCACUUCACAUCGAUGAAGCGUGCACA	chr12:123998097-123998362(-)$1	265	195	230	11.2841
UCCUGCUCUUGCUUCUGGAUCUGCAGGGCAGUCCC	chr17:78237331-78237599(+)$1	268	104	139	12.5837
AAGGUAAGAGACUCGGCCGACCCCUUCUUUUCCUC	chr8:117886753-117886997(-)$1	244	145	180	10.7711
uauguauuuuaaaagacuuuauuuuuuuaagaaca	chr9:79934429-79934687(+)$1	258	197	232	13.6565
UUAUUCUUUUUUAGUGCAGCGGGAGAGAGCGGGAG	chr4:83294796-83295083(-)$1	287	11	46	12.7989
CGUGUCCGCUGCAUCUUCCUCUAGGAGCAUCUGUG	chr21:44269611-44269861(-)$1	250	30	65	13.8934
cugccacugccacugccaccUCGCGGAUCAGGAGC	chr9:35072312-35072576(-)$1	264	6	41	12.8307
CUGGGAGUGGGACCAUGCAGAGCAGCCCCUCCCCU	chr16:30711941-30712180(+)$1	239	190	225	11.8039
CCCCUGCAGAGGAGACAGAAUAUGAGUACAGCGGC	chr17:4790341-4790568(+)$1	227	54	89	11.3687
UACCUAGCGGAACUGGUAACACCCAUUCUGCAGGA	chr3:184046322-184046618(+)$1	296	157	192	13.8488
CUUCAAGUGGGCCAUUGAGCUAAGCGGGCCUGGAG	chr15:34517152-34517427(+)$1	275	204	239	14.2281
GUGUUGCAGCGCCUCGCCCCUUGCCGGUGCUCUUU	chr14:61201413-61201703(+)$1	290	9	44	10.5209
AUAAAGUACAGGAAAGUCAGAGAUGGUUGUGUGAC	chr9:79930092-79930369(+)$1	277	122	157	12.2192
CAGCUGCCCGAGAUUUCUUCCCAGAUUUCUAGUUG	chr14:90863424-90863682(+)$1	258	183	218	11.7420
GCUGUCUGUAGCUGAGCACUUCCUGGAGCAGCAGA	chr1:156294724-156294981(-)$1	257	111	146	13.6085
UUGCUGGUCAAUAUGAUUCUUCUUGCUGUGCUUUU	chr4:100495909-100496168(+)$1	259	145	180	11.2848
GGCUGCCGCGGAGUGCGAUGUGGUAAUGGCGGCGA	chr17:40169267-40169552(-)$1	285	123	158	14.3490
CUCCCUGCACCGUCUCACUGUGUGUCUCGUGUCAG	chr16:2139265-2139572(-)$1	307	256	291	11.8739
aggaagaagaagGUGAUGGUGAGUAGCCUUGUCUA	chr2:232576509-232576723(+)$1	214	166	201	9.8917
UGCAGGGACAUUUACUGAAGGAGGGACAUGGACAA	chr6:32948592-32948857(+)$1	265	55	90	16.1216
UGUGUCUAUAUUUCUGAAUUUUUCUUAUUGUAGAC	chr4:141300168-141300400(+)$1	232	73	108	11.6870
caaugagggacagauaggcuuauauuaucucucua	chr8:9629762-9630032(+)$1	270	80	115	12.1338
UCAUGUUCUCUCAAGCUUUAGCCCAUGAGGAGGAU	chr17:31258243-31258526(+)$1	283	234	269	11.9136
CAUUAUUUUUGACCACUGCUAUGUGUUCAAGUAGU	chr5:76987060-76987334(-)$1	274	148	183	13.9744
gUGGGGCUCgggcggcgacggagcggggccggccg	chrX:20284756-20285018(-)$1	262	181	216	16.3757
CUUAGCUGGAAGGAAUUUCUACCUGAAGGCCAGGA	chr3:184049029-184049253(+)$1	224	63	98	10.0601
CGGGAGGAGUUUGUGGCUUUGGCACUGACUUCUGU	chr12:123997747-123998010(-)$1	263	173	208	12.3153
AAGGGCCAGAGGCAGCACUUACUGCCCGGGCCCUU	chr19:19303600-19304011(+)$1	411	39	74	12.1075
UUACGGAGAUGGGUGAGUUUCCUCCCAACCCGUAC	chr1:156351969-156352191(+)$1	222	11	46	11.5713
CGCGGCUUCCGGUGCUAGGUGGAGGGAAGGAAGGA	chr12:49351013-49351329(-)$1	316	78	113	14.0377
GCUUUAUGCCCUGCUCCCUCUAGAGAAGGUGUUUA	chr3:184052986-184053202(+)$1	216	170	205	11.8898
cagcgaggCCGUUUGCAGUAGCAGGUGGUUUCUUU	chr10:697633-697887(-)$1	254	60	95	12.2558
UGUGGGUUGCCUGGUGAAUGGCCUUCCUUCCCGCC	chr3:50155931-50156235(+)$1	304	126	161	11.0931
AGUCUGAACCAAUCAGAGUCCUUGUGACUGGAGCA	chr2:63821519-63821775(+)$1	256	100	135	11.9066
GGAGUACGUGUGCCGUGUGGUCGGCAGCUCAGGUA	chr1:22175289-22175512(-)$1	223	38	73	11.8975
UCCCGCGAAGGAGAAGCGCGCUUUUUUCCCUGGCG	chr10:96305506-96305783(+)$1	277	32	67	12.3688
ACCAGAGGAGUGGAAGUAAGAUACAAACCUGCUUU	chr8:141889492-141889759(-)$1	267	175	210	11.0684
CCACAUAAGCAAAAAGAAAAUGCUGCUGCUGCCCU	chr12:112757047-112757305(-)$1	258	221	256	14.0282
AGGGAGGGGAGGCAGCCUUUCCGCCUUGUCUUCCU	chr1:179923940-179924305(+)$1	365	128	163	15.3196
UUUAAUAUGUUUUGAAAUAUAGUUUGAAAUAUGUA	chr17:53063403-53063733(+)$1	330	236	271	11.7722
AAAUCUGGCCUACGUCACCAAGACUCGGGUCAGGU	chr1:113231453-113231702(+)$1	249	157	192	12.3445
GUCUUCUGGGCUUUAGUUUUGCCUUUAGUCCAGCC	chr16:2142886-2143171(-)$1	285	242	277	15.2337
UCUAGGCUGCCAAACUACUUUGUUCGGCCAGAUCU	chr2:86712752-86713007(+)$1	255	169	204	12.1191
CCGCGGGGCGCCAGGUGCAGCAAUGGGUUCCCCGA	chr14:55369278-55369607(-)$1	329	262	297	12.9390
AGCAGCUGCUGUUGUUgcagcagcagcagcggcag	chr2:153532960-153533239(-)$1	279	36	71	12.5004
CUGGGACGCAGGCACUGCUCCAGGUGAUAGUGCGG	chr3:98312230-98312570(-)$1	340	183	218	12.0869
AGGUUUGGGGAAAGGCGAGGAAGUCGGUCUGGAGC	chr2:201171076-201171362(+)$1	286	19	54	12.3351
CGGAAGCCCUUUUCCAGAGGCUGGGAACACGGCCC	chr17:4843821-4844115(+)$1	294	17	52	12.0477
cgcagcgacgggcgcggagguccggccgggcgcgc	chr9:113018592-113018888(-)$1	296	1	36	11.7228
GGGUGGUGGUAUGUGGCAUGGGCCCGAGUGUCAGG	chr13:77765771-77766037(-)$1	266	135	170	12.3574

#DB
(.(.(((((.(((.(.....).))))).))).).)	chr3:49758744-49758996(+)$1	1	139	174	11.0217
(((((.(((.(..(((.....)))..)..))).))	chr9:67785060-67785384(-)$1	1	92	127	12.2039
(((((((.(((.((((((...)))..))).)))))	chr2:54197760-54198041(-)$1	1	153	188	13.2871
(((((.((((..((((......))))....)))))	chr12:123998383-123998636(-)$1	1	55	90	11.1377
(((((((...(((.((....)))))...))).)))	chr6:56330850-56331095(-)$1	1	110	145	11.6108
..(((..(((.((.((......))...)).)))..	chr18:19192214-19192503(+)$1	1	180	215	13.4403
))))(((.((.(((((......))))).)).)))(	chr12:123998097-123998362(-)$1	1	195	230	11.2841
(((((((.(((((.(((......))))))))....	chr17:78237331-78237599(+)$1	1	104	139	12.5837
.(((.((((((...((....))...))))))))).	chr8:117886753-117886997(-)$1	1	145	180	10.7711
..(((.((((((((((......)))))))))))))	chr9:79934429-79934687(+)$1	1	197	232	13.6565
.(((((((.(((..(.(....).)..))).)))))	chr4:83294796-83295083(-)$1	1	11	46	12.7989
((((((((((((.(((......))).)))...)))	chr21:44269611-44269861(-)$1	1	30	65	13.8934
((((..(((...((((......))))..)))..).	chr9:35072312-35072576(-)$1	1	6	41	12.8307
..(((((.(((.(..(((...))))))))))))..	chr16:30711941-30712180(+)$1	1	190	225	11.8039
(.(((((.(..((..((.....))..).)..).))	chr17:4790341-4790568(+)$1	1	54	89	11.3687
(((((.((((((.(((......)))))))))....	chr3:184046322-184046618(+)$1	1	157	192	13.8488
((((...((((((.((......))..))))))...	chr15:34517152-34517427(+)$1	1	204	239	14.2281
(((....((((((..((.....)).))))))....	chr14:61201413-61201703(+)$1	1	9	44	10.5209
((..((((((.((..(((...)))..)).))).))	chr9:79930092-79930369(+)$1	1	122	157	12.2192
((((((...(((((((......)))))))))))))	chr14:90863424-90863682(+)$1	1	183	218	11.7420
))))(((((.(((.((......))..))).)))))	chr1:156294724-156294981(-)$1	1	111	146	13.6085
..(((((.(((...((....)))))))).))...)	chr4:100495909-100496168(+)$1	1	145	180	11.2848
((.((((((....(((......)))...)))))).	chr17:40169267-40169552(-)$1	1	123	158	14.3490
....(((.((((...(((...)))...)).)))))	chr16:2139265-2139572(-)$1	1	256	291	11.8739
(((((((..(((((.((.....)).))))).))).	chr2:232576509-232576723(+)$1	1	166	201	9.8917
((...(..(((...((......))...)))..)..	chr6:32948592-32948857(+)$1	1	55	90	16.1216
.))(((((((.....(((...)))....)))))))	chr4:141300168-141300400(+)$1	1	73	108	11.6870
(...((((((..((((......)))).))))))..	chr8:9629762-9630032(+)$1	1	80	115	12.1338
(((((((((((((.((....))...))).))))))	chr17:31258243-31258526(+)$1	1	234	269	11.9136
(((..(.(((((.(((......))).))))).)..	chr5:76987060-76987334(-)$1	1	148	183	13.9744
.((.(((.(((.(.((......))..).)))))).	chrX:20284756-20285018(-)$1	1	181	216	16.3757
(((.(((...(((........)))...))).))).	chr3:184049029-184049253(+)$1	1	63	98	10.0601
(((.(((((((.(((.(...).))).))))))).)	chr12:123997747-123998010(-)$1	1	173	208	12.3153
(((((((.(.(((((......)))))).)))))))	chr19:19303600-19304011(+)$1	1	39	74	12.1075
.(((((.(.((((.(......).)))).)))))).	chr1:156351969-156352191(+)$1	1	11	46	11.5713
(.(..(((((..(.((......)).)..)))))..	chr12:49351013-49351329(-)$1	1	78	113	14.0377
.((.((.(((((.(((......))).))).)).))	chr3:184052986-184053202(+)$1	1	170	205	11.8898
(((.((((((((((((....))))))))))))..)	chr10:697633-697887(-)$1	1	60	95	12.2558
.(((((..(...(((.....)))...)..))))).	chr3:50155931-50156235(+)$1	1	126	161	11.0931
((.(((..(((.(((.(.....).))).)))..))	chr2:63821519-63821775(+)$1	1	100	135	11.9066
((..(((.(((((((......)))))...)).)))	chr1:22175289-22175512(-)$1	1	38	73	11.8975
((((((.(.(((((((......))))))).).)))	chr10:96305506-96305783(+)$1	1	32	67	12.3688
(((((((.((.(...(((...)))...))).))))	chr8:141889492-141889759(-)$1	1	175	210	11.0684
(((....((((...((......))..))))....)	chr12:112757047-112757305(-)$1	1	221	256	14.0282
.(((((((((((((((......))..)))))))))	chr1:179923940-179924305(+)$1	1	128	163	15.3196
)...((((((((((((......)))))))))))).	chr17:53063403-53063733(+)$1	1	236	271	11.7722
..(((((((((..(((.....)))..)))))))))	chr1:113231453-113231702(+)$1	1	157	192	12.3445
(....(((((((..((......))..))))))).)	chr16:2142886-2143171(-)$1	1	242	277	15.2337
)((((((((((.(((......))).)).))).)))	chr2:86712752-86713007(+)$1	1	169	204	12.1191
((((((((.(((..((......)).))).))))..	chr14:55369278-55369607(-)$1	1	262	297	12.9390
.((.((((((((((((((....)))))))))))))	chr2:153532960-153533239(-)$1	1	36	71	12.5004
.((...((((..((((......))))....)))).	chr3:98312230-98312570(-)$1	1	183	218	12.0869
..((((.(((...(((......)))..))).))))	chr2:201171076-201171362(+)$1	1	19	54	12.3351
.((..(((..(((((((...)))))))...)))..	chr17:4843821-4844115(+)$1	1	17	52	12.0477
(((.(((.(.(((.(((....)))))).).)))))	chr9:113018592-113018888(-)$1	1	1	36	11.7228
((((..((((((..(((....)))...))))))..	chr13:77765771-77766037(-)$1	1	135	170	12.3574

#PSSM
c : 0.14	f : 0.10	e : 0.10	[ : 0.10	: : 0.08	d : 0.08	g : 0.07	! : 0.07	h : 0.05	b : 0.05	i : 0.03	# : 0.01	] : 0.01	= : 0.01	% : 0.01	
b : 0.16	e : 0.14	c : 0.14	g : 0.08	f : 0.07	: : 0.07	[ : 0.05	d : 0.05	h : 0.05	! : 0.03	# : 0.03	= : 0.03	i : 0.01	" : 0.01	% : 0.01	
e : 0.16	b : 0.14	c : 0.12	g : 0.08	f : 0.07	d : 0.07	a : 0.05	h : 0.05	i : 0.03	! : 0.03	[ : 0.03	# : 0.03	" : 0.03	= : 0.03	: : 0.01	
[ : 0.14	e : 0.12	g : 0.10	f : 0.08	! : 0.08	c : 0.07	d : 0.07	# : 0.07	h : 0.05	" : 0.05	i : 0.03	= : 0.03	a : 0.01	b : 0.01	: : 0.01	
c : 0.26	f : 0.08	g : 0.08	! : 0.08	e : 0.08	= : 0.08	d : 0.05	" : 0.05	# : 0.05	h : 0.05	i : 0.03	[ : 0.01	b : 0.01	
c : 0.24	g : 0.10	e : 0.10	= : 0.08	[ : 0.07	f : 0.07	! : 0.05	d : 0.05	h : 0.05	" : 0.03	# : 0.03	a : 0.03	b : 0.01	i : 0.01	
c : 0.28	g : 0.10	f : 0.10	= : 0.10	[ : 0.08	d : 0.07	! : 0.07	e : 0.05	" : 0.03	# : 0.03	h : 0.01	i : 0.01	
[ : 0.21	f : 0.14	c : 0.12	= : 0.10	d : 0.07	g : 0.07	! : 0.07	" : 0.05	e : 0.05	b : 0.03	a : 0.03	i : 0.01	
c : 0.21	f : 0.14	b : 0.10	= : 0.10	e : 0.07	[ : 0.07	a : 0.07	d : 0.05	" : 0.05	g : 0.05	! : 0.03	i : 0.01	
c : 0.23	f : 0.10	= : 0.10	[ : 0.08	b : 0.08	g : 0.08	d : 0.07	" : 0.07	e : 0.07	! : 0.03	# : 0.01	i : 0.01	
c : 0.28	! : 0.08	e : 0.08	f : 0.08	= : 0.08	g : 0.08	[ : 0.07	" : 0.05	b : 0.03	d : 0.03	a : 0.01	# : 0.01	$ : 0.01	i : 0.01	
c : 0.17	" : 0.12	! : 0.10	[ : 0.10	e : 0.10	= : 0.08	f : 0.07	g : 0.07	b : 0.05	a : 0.03	# : 0.01	$ : 0.01	d : 0.01	
c : 0.19	" : 0.12	! : 0.10	d : 0.08	e : 0.08	= : 0.08	[ : 0.07	a : 0.07	g : 0.05	b : 0.03	f : 0.03	# : 0.01	$ : 0.01	
c : 0.23	[ : 0.19	! : 0.14	" : 0.10	= : 0.08	d : 0.07	e : 0.07	g : 0.05	$ : 0.01	q : 0.01	
c : 0.28	b : 0.24	d : 0.07	= : 0.07	! : 0.07	a : 0.05	e : 0.05	g : 0.05	" : 0.03	[ : 0.01	$ : 0.01	q : 0.01	
c : 0.30	b : 0.30	d : 0.07	= : 0.07	o : 0.07	[ : 0.05	g : 0.05	n : 0.03	e : 0.01	q : 0.01	
o : 0.51	c : 0.16	m : 0.08	n : 0.07	a : 0.05	b : 0.05	q : 0.01	= : 0.01	g : 0.01	
o : 0.53	n : 0.14	m : 0.14	c : 0.10	l : 0.03	q : 0.01	= : 0.01	
o : 0.53	m : 0.16	n : 0.14	l : 0.14	q : 0.01	
o : 0.53	m : 0.16	n : 0.14	l : 0.14	q : 0.01	
o : 0.53	n : 0.10	l : 0.10	b : 0.07	m : 0.07	a : 0.03	q : 0.01	= : 0.01	c : 0.01	g : 0.01	
o : 0.46	c : 0.23	b : 0.07	n : 0.07	] : 0.03	a : 0.03	e : 0.03	= : 0.01	m : 0.01	g : 0.01	
c : 0.41	b : 0.23	d : 0.07	= : 0.07	e : 0.05	g : 0.05	3 : 0.03	] : 0.03	o : 0.01	a : 0.01	
c : 0.41	b : 0.23	d : 0.08	= : 0.07	e : 0.05	3 : 0.05	g : 0.05	a : 0.01	] : 0.01	
c : 0.23	2 : 0.21	3 : 0.16	d : 0.08	] : 0.08	= : 0.07	e : 0.05	g : 0.05	a : 0.01	4 : 0.01	
2 : 0.23	3 : 0.16	c : 0.12	d : 0.08	e : 0.07	= : 0.07	] : 0.07	f : 0.05	g : 0.05	b : 0.03	4 : 0.01	a : 0.01	
c : 0.19	3 : 0.16	a : 0.08	= : 0.08	g : 0.08	e : 0.07	f : 0.07	b : 0.05	4 : 0.05	2 : 0.05	d : 0.03	] : 0.01	i : 0.01	
c : 0.21	] : 0.16	f : 0.10	= : 0.08	2 : 0.07	3 : 0.07	g : 0.07	4 : 0.05	b : 0.05	e : 0.05	a : 0.01	d : 0.01	i : 0.01	
c : 0.24	f : 0.12	g : 0.10	e : 0.08	= : 0.08	b : 0.07	] : 0.07	a : 0.05	2 : 0.03	4 : 0.03	3 : 0.03	d : 0.01	i : 0.01	
c : 0.19	] : 0.14	e : 0.12	f : 0.12	= : 0.10	b : 0.07	g : 0.07	4 : 0.03	3 : 0.03	d : 0.03	2 : 0.01	h : 0.01	i : 0.01	
c : 0.21	e : 0.12	f : 0.12	= : 0.10	] : 0.08	g : 0.08	b : 0.07	d : 0.05	2 : 0.03	3 : 0.01	h : 0.01	a : 0.01	4 : 0.01	i : 0.01	
c : 0.19	] : 0.10	= : 0.10	g : 0.08	e : 0.08	d : 0.07	4 : 0.07	f : 0.07	2 : 0.05	3 : 0.03	h : 0.03	b : 0.03	a : 0.01	i : 0.01	
c : 0.21	e : 0.12	g : 0.08	] : 0.07	d : 0.07	4 : 0.07	f : 0.07	= : 0.07	a : 0.05	2 : 0.05	h : 0.05	3 : 0.03	i : 0.01	
c : 0.19	2 : 0.14	d : 0.08	e : 0.08	4 : 0.08	= : 0.07	] : 0.05	f : 0.05	g : 0.05	3 : 0.05	h : 0.05	a : 0.01	b : 0.01	i : 0.01	
2 : 0.16	c : 0.14	e : 0.08	4 : 0.08	] : 0.08	f : 0.07	g : 0.07	3 : 0.05	d : 0.05	h : 0.05	= : 0.05	b : 0.03	: : 0.01	i : 0.01	

#score	698.8469058601535
#seq	56
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_UTR_m3_run2.txt

#BEAR
ffffqqqqqqqqffff	chr9:32985881-32986135(-)$1	254	184	200	12.3464
[cccqqqqqqqqccc]	chr17:44159760-44160022(-)$1	262	184	200	13.8151
f[bbqqqqqqqqbbff	chr9:95033802-95034066(-)$1	264	196	212	12.4015
eeeeqqqqqqqqeeee	chr14:69619463-69619762(-)$1	299	7	23	13.5351
ddddqqqqqqqqdddd	chr3:10320785-10321043(+)$1	258	118	134	14.0674
ddddqqqqqqqqdddd	chr17:57915547-57915775(+)$1	228	177	193	14.0674
ddddqqqqqqqqdddd	chr1:224574087-224574344(-)$1	257	57	73	14.0674
ddddqqqqqqqqdddd	chrX:102933362-102933681(-)$1	319	139	155	14.0674
eeeeqqqqqqqqeeee	chrX:102940013-102940314(-)$1	301	270	286	13.5351
ffffqqqqqqqqffff	chr20:33891707-33892010(-)$1	303	47	63	12.3464
!!bbqqqqqqqqbb22	chr2:70456072-70456333(-)$1	261	206	222	12.4705
ggggqqqqqqqqgggg	chr21:18940361-18940597(+)$1	236	23	39	13.0237
ddddqqqqqqqqdddd	chr17:57915575-57915788(+)$1	213	149	165	14.0674
ddddqqqqqqqqdddd	chr1:155884000-155884256(-)$1	256	2	18	14.0674
bcccqqqqqqqqccc]	chr6:41751748-41752008(+)$1	260	143	159	13.3423
ffffqqqqqqqqffff	chr5:134126075-134126293(+)$1	218	189	205	12.3464
eeeeqqqqqqqqeeee	chrX:23802349-23802591(+)$1	242	137	153	13.5351
eeeeqqqqqqqqeeee	chr16:75033388-75033627(+)$1	239	67	83	13.5351
!cccqqqqqqqqcccd	chrX:30715715-30715994(+)$1	279	172	188	13.8636
ddddqqqqqqqqdddd	chr14:39618384-39618654(-)$1	270	69	85	14.0674
[cccqqqqqqqqcccc	chr2:152293238-152293500(+)$1	262	167	183	13.7015
ddddqqqqqqqqdddd	chr16:4927276-4927545(+)$1	269	94	110	14.0674
##bbqqqqqqqqbb44	chr19:54972704-54972961(+)$1	257	159	175	12.5131
ddddqqqqqqqqdddd	chr1:27816465-27816761(-)$1	296	127	143	14.0674
ddddqqqqqqqqdddd	chr16:30711824-30712127(+)$1	303	24	40	14.0674
ddddqqqqqqqqdddd	chr10:5762401-5762717(+)$1	316	0	16	14.0674
[cccqqqqqqqqccc5	chr20:62572465-62572673(-)$1	208	65	81	12.9267
eeeeqqqqqqqqeeee	chr6:33162684-33162948(-)$1	264	63	79	13.5351
eebbqqqqqqqqbb]e	chr12:67704703-67704984(+)$1	281	220	236	12.8384
ddddqqqqqqqqdddd	chr11:46404295-46404537(+)$1	242	56	72	14.0674
dd[aqqqqqqqqaddd	chr17:73236351-73236603(-)$1	252	234	250	13.8057
eeeeqqqqqqqqeeee	chr12:57909769-57910019(+)$1	250	142	158	13.5351
[cccqqqqqqqqccc]	chr19:54971693-54971956(+)$1	263	21	37	13.8151
[cccqqqqqqqqccc]	chr9:111826698-111826953(-)$1	255	198	214	13.8151
ddddqqqqqqqqdddd	chr11:74976953-74977215(-)$1	262	162	178	14.0674
Dcccqqqqqqqqccc:	chr6:43151923-43152194(+)$1	271	34	50	11.8022
====qqqqqqqq====	chr13:31726917-31727180(-)$1	263	128	144	13.2529
eeeeqqqqqqqqeeee	chrX:23802321-23802545(+)$1	224	165	181	13.5351
[cccqqqqqqqqccc]	chr2:62115235-62115507(-)$1	272	75	91	13.8151
e!!aqqqqqqqqa22e	chr20:54970466-54970716(+)$1	250	202	218	12.8580
fffaqqqqqqqqa]ff	chr16:29930816-29931066(-)$1	250	191	207	12.6493
ddddqqqqqqqqdddd	chr17:57915588-57915802(+)$1	214	136	152	14.0674
[a[aqqqqqqqqa]a]	chr14:24654056-24654301(-)$1	245	51	67	13.2014
eeeeqqqqqqqqeeee	chr4:119736126-119736422(-)$1	296	186	202	13.5351
!!bbqqqqqqqqbb22	chr8:22269333-22269559(+)$1	226	76	92	12.4705
ddddqqqqqqqqdddd	chr12:57883875-57884129(+)$1	254	32	48	14.0674
ddddqqqqqqqqdddd	chr17:79526296-79526559(-)$1	263	50	66	14.0674
"cccqqqqqqqqccc3	chr2:207014487-207014754(-)$1	267	25	41	13.6668
""bbqqqqqqqqbbgg	chr13:111932739-111933058(+)$1	319	156	172	12.6178
[cccqqqqqqqqcccd	chr6:32943918-32944191(+)$1	273	179	195	13.8525
cc[aqqqqqqqqa]cc	chr3:171758227-171758515(+)$1	288	217	233	13.1746
ddddqqqqqqqqdddd	chr6:160209768-160210010(-)$1	242	173	189	14.0674
eeeeqqqqqqqqeeee	chr6:31625690-31625932(+)$1	242	187	203	13.5351
ddddqqqqqqqqdddd	chr8:30242294-30242568(+)$1	274	163	179	14.0674
ggggqqqqqqqqgggg	chr1:16892147-16892411(-)$1	264	234	250	13.0237
!cccqqqqqqqqccc3	chr17:3727247-3727502(-)$1	255	109	125	13.7865
!!bbqqqqqqqqbbff	chr1:1326767-1327048(-)$1	281	39	55	12.6952
ddddqqqqqqqqdddd	chr14:23444176-23444415(-)$1	239	193	209	14.0674
g[bbqqqqqqqqbbgg	chr5:179050403-179050655(-)$1	252	125	141	12.6702
ddddqqqqqqqqdddd	chr1:36411178-36411416(+)$1	238	10	26	14.0674
e[bbqqqqqqqqbb]e	chr5:33453287-33453533(+)$1	246	182	198	12.8028
!cccqqqqqqqqccc2	chr14:24616253-24616507(-)$1	254	58	74	13.6071
ee[aqqqqqqqqaeee	chr16:57241469-57241803(+)$1	334	228	244	13.5395
ddddqqqqqqqqdddd	chr17:57915602-57915855(+)$1	253	122	138	14.0674
eeeeqqqqqqqqeeee	chr12:7252221-7252475(-)$1	254	116	132	13.5351
eeeeqqqqqqqqeeee	chr2:209176826-209177106(+)$1	280	131	147	13.5351
eeeeqqqqqqqqeeee	chr2:192547898-192548180(+)$1	282	208	224	13.5351
ccccqqqqqqqqccc]	chr10:105420734-105421001(-)$1	267	21	37	13.6535

#otherMatches

#Seq PSSM
GAAUUUCAGUACAUUU	chr9:32985881-32986135(-)$1	254	184	200	12.3464
AGGUGAAGACAGAUCA	chr17:44159760-44160022(-)$1	262	184	200	13.8151
AUGCUUCAGGCUGCUU	chr9:95033802-95034066(-)$1	264	196	212	12.4015
ggccgcgcgugaggcc	chr14:69619463-69619762(-)$1	299	7	23	13.5351
GGGCGACCAGCAGCCU	chr3:10320785-10321043(+)$1	258	118	134	14.0674
GCUUCACCACAAAAGC	chr17:57915547-57915775(+)$1	228	177	193	14.0674
UGCCUCUACAGUGGCA	chr1:224574087-224574344(-)$1	257	57	73	14.0674
GCCUUUCUUUCUAGGU	chrX:102933362-102933681(-)$1	319	139	155	14.0674
uccuaacuguccagga	chrX:102940013-102940314(-)$1	301	270	286	13.5351
UUCCUCUCCUCUGGGA	chr20:33891707-33892010(-)$1	303	47	63	12.3464
GUUUUUUUGUUUGAUA	chr2:70456072-70456333(-)$1	261	206	222	12.4705
AGUUGAACAAAAAAUU	chr21:18940361-18940597(+)$1	236	23	39	13.0237
GCUUCACCACAAAAGC	chr17:57915575-57915788(+)$1	213	149	165	14.0674
GGGUGACCAUUGACCC	chr1:155884000-155884256(-)$1	256	2	18	14.0674
UUCCCUUUGCCUGGAC	chr6:41751748-41752008(+)$1	260	143	159	13.3423
GUUUUGAAAUGUAAAU	chr5:134126075-134126293(+)$1	218	189	205	12.3464
UUACACAAUAAAGUAG	chrX:23802349-23802591(+)$1	242	137	153	13.5351
GGUCUCCUUUUUGACU	chr16:75033388-75033627(+)$1	239	67	83	13.5351
UAUGUACCCAUUCAUU	chrX:30715715-30715994(+)$1	279	172	188	13.8636
AAACUAUACUUUGUUU	chr14:39618384-39618654(-)$1	270	69	85	14.0674
AUGGCCACAAUCCCAU	chr2:152293238-152293500(+)$1	262	167	183	13.7015
CCUGUUUUCUCUCAGG	chr16:4927276-4927545(+)$1	269	94	110	14.0674
ACGGUUCCCCUCCCUC	chr19:54972704-54972961(+)$1	257	159	175	12.5131
GCGCGGCUGGGGGCGU	chr1:27816465-27816761(-)$1	296	127	143	14.0674
UCAGUGUUAUUUCUGG	chr16:30711824-30712127(+)$1	303	24	40	14.0674
UGACUCUAAUGUGUUA	chr10:5762401-5762717(+)$1	316	0	16	14.0674
UGGGAAAAGACCCCCU	chr20:62572465-62572673(-)$1	208	65	81	12.9267
GCCAUCCUGAUUUGGU	chr6:33162684-33162948(-)$1	264	63	79	13.5351
CUCAAAGUUCAAUGAA	chr12:67704703-67704984(+)$1	281	220	236	12.8384
ccccgccUGUGAGGGG	chr11:46404295-46404537(+)$1	242	56	72	14.0674
AGCGUCAUGUCUCCUG	chr17:73236351-73236603(-)$1	252	234	250	13.8057
UCUUAACUAGAAGAGA	chr12:57909769-57910019(+)$1	250	142	158	13.5351
CCGCACAGGUAAGUGA	chr19:54971693-54971956(+)$1	263	21	37	13.8151
UAAGGGAAGAAACUUU	chr9:111826698-111826953(-)$1	255	198	214	13.8151
GGCCUCAGGAUUGGCC	chr11:74976953-74977215(-)$1	262	162	178	14.0674
CUCUGUGUCUCAAGAU	chr6:43151923-43152194(+)$1	271	34	50	11.8022
GUGUUAGAUGCUGCAC	chr13:31726917-31727180(-)$1	263	128	144	13.2529
UUACACAAUAAAGUAG	chrX:23802321-23802545(+)$1	224	165	181	13.5351
UCCCAUUUCUUCGGGU	chr2:62115235-62115507(-)$1	272	75	91	13.8151
CAGCUGCUAUAUGACG	chr20:54970466-54970716(+)$1	250	202	218	12.8580
gaucuucacguugcau	chr16:29930816-29931066(-)$1	250	191	207	12.6493
GCUUCACCACAAAAGC	chr17:57915588-57915802(+)$1	214	136	152	14.0674
GAGGGAGGUGGGCGUG	chr14:24654056-24654301(-)$1	245	51	67	13.2014
GCUGGUCCGCCACAGC	chr4:119736126-119736422(-)$1	296	186	202	13.5351
CCGUUAAUAUCCACCA	chr8:22269333-22269559(+)$1	226	76	92	12.4705
CCUCACAAAGAAGGGG	chr12:57883875-57884129(+)$1	254	32	48	14.0674
UGCCCACACUCUGGCA	chr17:79526296-79526559(-)$1	263	50	66	14.0674
GUGUGUGUUUCAGCAA	chr2:207014487-207014754(-)$1	267	25	41	13.6668
GAGCGGAUAUUAGUGU	chr13:111932739-111933058(+)$1	319	156	172	12.6178
ACUCCUCCACCUGAGA	chr6:32943918-32944191(+)$1	273	179	195	13.8525
CCGGGGAUAGGGCGGG	chr3:171758227-171758515(+)$1	288	217	233	13.1746
UUUGGAUACCUACAGA	chr6:160209768-160210010(-)$1	242	173	189	14.0674
AUCUAAGUCCCCAGAU	chr6:31625690-31625932(+)$1	242	187	203	13.5351
agccacugccccggcu	chr8:30242294-30242568(+)$1	274	163	179	14.0674
CUUUUAUGCAUUGGAG	chr1:16892147-16892411(-)$1	264	234	250	13.0237
cgcccagccccagguc	chr17:3727247-3727502(-)$1	255	109	125	13.7865
CAUGUUGCUUCUCAGU	chr1:1326767-1327048(-)$1	281	39	55	12.6952
ACUUCUCCAACCAAGU	chr14:23444176-23444415(-)$1	239	193	209	14.0674
GAGCUGCAGGCUGCCG	chr5:179050403-179050655(-)$1	252	125	141	12.6702
UAGCCAUUAUCAGCUG	chr1:36411178-36411416(+)$1	238	10	26	14.0674
GAUUGUACCUUGGAGC	chr5:33453287-33453533(+)$1	246	182	198	12.8028
AAAACCUUUCUUUUUC	chr14:24616253-24616507(-)$1	254	58	74	13.6071
UGUGCUUUUACCCCAG	chr16:57241469-57241803(+)$1	334	228	244	13.5395
GCUUCACCACAAAAGC	chr17:57915602-57915855(+)$1	253	122	138	14.0674
CAGGGGCACUCACCUG	chr12:7252221-7252475(-)$1	254	116	132	13.5351
AGAGUAUUUGAUUUCU	chr2:209176826-209177106(+)$1	280	131	147	13.5351
AACCCUAAACAUGGUU	chr2:192547898-192548180(+)$1	282	208	224	13.5351
CGCUGGCGACAGAGCA	chr10:105420734-105421001(-)$1	267	21	37	13.6535

#DB
((((........))))	chr9:32985881-32986135(-)$1	1	184	200	12.3464
.(((........))).	chr17:44159760-44160022(-)$1	1	184	200	13.8151
(.((........))))	chr9:95033802-95034066(-)$1	1	196	212	12.4015
((((........))))	chr14:69619463-69619762(-)$1	1	7	23	13.5351
((((........))))	chr3:10320785-10321043(+)$1	1	118	134	14.0674
((((........))))	chr17:57915547-57915775(+)$1	1	177	193	14.0674
((((........))))	chr1:224574087-224574344(-)$1	1	57	73	14.0674
((((........))))	chrX:102933362-102933681(-)$1	1	139	155	14.0674
((((........))))	chrX:102940013-102940314(-)$1	1	270	286	13.5351
((((........))))	chr20:33891707-33892010(-)$1	1	47	63	12.3464
..((........))..	chr2:70456072-70456333(-)$1	1	206	222	12.4705
((((........))))	chr21:18940361-18940597(+)$1	1	23	39	13.0237
((((........))))	chr17:57915575-57915788(+)$1	1	149	165	14.0674
((((........))))	chr1:155884000-155884256(-)$1	1	2	18	14.0674
((((........))).	chr6:41751748-41752008(+)$1	1	143	159	13.3423
((((........))))	chr5:134126075-134126293(+)$1	1	189	205	12.3464
((((........))))	chrX:23802349-23802591(+)$1	1	137	153	13.5351
((((........))))	chr16:75033388-75033627(+)$1	1	67	83	13.5351
.(((........))))	chrX:30715715-30715994(+)$1	1	172	188	13.8636
((((........))))	chr14:39618384-39618654(-)$1	1	69	85	14.0674
.(((........))))	chr2:152293238-152293500(+)$1	1	167	183	13.7015
((((........))))	chr16:4927276-4927545(+)$1	1	94	110	14.0674
..((........))..	chr19:54972704-54972961(+)$1	1	159	175	12.5131
((((........))))	chr1:27816465-27816761(-)$1	1	127	143	14.0674
((((........))))	chr16:30711824-30712127(+)$1	1	24	40	14.0674
((((........))))	chr10:5762401-5762717(+)$1	1	0	16	14.0674
.(((........))).	chr20:62572465-62572673(-)$1	1	65	81	12.9267
((((........))))	chr6:33162684-33162948(-)$1	1	63	79	13.5351
((((........)).)	chr12:67704703-67704984(+)$1	1	220	236	12.8384
((((........))))	chr11:46404295-46404537(+)$1	1	56	72	14.0674
((.(........))))	chr17:73236351-73236603(-)$1	1	234	250	13.8057
((((........))))	chr12:57909769-57910019(+)$1	1	142	158	13.5351
.(((........))).	chr19:54971693-54971956(+)$1	1	21	37	13.8151
.(((........))).	chr9:111826698-111826953(-)$1	1	198	214	13.8151
((((........))))	chr11:74976953-74977215(-)$1	1	162	178	14.0674
((((........))).	chr6:43151923-43152194(+)$1	1	34	50	11.8022
((((........))))	chr13:31726917-31727180(-)$1	1	128	144	13.2529
((((........))))	chrX:23802321-23802545(+)$1	1	165	181	13.5351
.(((........))).	chr2:62115235-62115507(-)$1	1	75	91	13.8151
(..(........)..)	chr20:54970466-54970716(+)$1	1	202	218	12.8580
((((........).))	chr16:29930816-29931066(-)$1	1	191	207	12.6493
((((........))))	chr17:57915588-57915802(+)$1	1	136	152	14.0674
.(.(........).).	chr14:24654056-24654301(-)$1	1	51	67	13.2014
((((........))))	chr4:119736126-119736422(-)$1	1	186	202	13.5351
..((........))..	chr8:22269333-22269559(+)$1	1	76	92	12.4705
((((........))))	chr12:57883875-57884129(+)$1	1	32	48	14.0674
((((........))))	chr17:79526296-79526559(-)$1	1	50	66	14.0674
.(((........))).	chr2:207014487-207014754(-)$1	1	25	41	13.6668
..((........))))	chr13:111932739-111933058(+)$1	1	156	172	12.6178
.(((........))))	chr6:32943918-32944191(+)$1	1	179	195	13.8525
((.(........).))	chr3:171758227-171758515(+)$1	1	217	233	13.1746
((((........))))	chr6:160209768-160210010(-)$1	1	173	189	14.0674
((((........))))	chr6:31625690-31625932(+)$1	1	187	203	13.5351
((((........))))	chr8:30242294-30242568(+)$1	1	163	179	14.0674
((((........))))	chr1:16892147-16892411(-)$1	1	234	250	13.0237
.(((........))).	chr17:3727247-3727502(-)$1	1	109	125	13.7865
..((........))))	chr1:1326767-1327048(-)$1	1	39	55	12.6952
((((........))))	chr14:23444176-23444415(-)$1	1	193	209	14.0674
(.((........))))	chr5:179050403-179050655(-)$1	1	125	141	12.6702
((((........))))	chr1:36411178-36411416(+)$1	1	10	26	14.0674
(.((........)).)	chr5:33453287-33453533(+)$1	1	182	198	12.8028
.(((........))).	chr14:24616253-24616507(-)$1	1	58	74	13.6071
((.(........))))	chr16:57241469-57241803(+)$1	1	228	244	13.5395
((((........))))	chr17:57915602-57915855(+)$1	1	122	138	14.0674
((((........))))	chr12:7252221-7252475(-)$1	1	116	132	13.5351
((((........))))	chr2:209176826-209177106(+)$1	1	131	147	13.5351
((((........))))	chr2:192547898-192548180(+)$1	1	208	224	13.5351
((((........))).	chr10:105420734-105421001(-)$1	1	21	37	13.6535

#PSSM
d : 0.32	e : 0.23	[ : 0.11	! : 0.08	f : 0.07	g : 0.04	" : 0.02	c : 0.02	b : 0.01	# : 0.01	D : 0.01	= : 0.01	
d : 0.32	c : 0.22	e : 0.20	f : 0.05	! : 0.05	[ : 0.04	g : 0.02	# : 0.01	= : 0.01	a : 0.01	" : 0.01	
d : 0.30	c : 0.20	e : 0.17	b : 0.13	f : 0.05	[ : 0.05	g : 0.02	= : 0.01	! : 0.01	
d : 0.30	c : 0.20	e : 0.17	b : 0.13	a : 0.08	f : 0.04	g : 0.02	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.30	c : 0.20	e : 0.17	b : 0.13	a : 0.08	f : 0.04	g : 0.02	= : 0.01	
d : 0.32	c : 0.20	e : 0.19	b : 0.13	f : 0.04	] : 0.04	g : 0.02	= : 0.01	2 : 0.01	
d : 0.32	c : 0.22	e : 0.19	f : 0.08	g : 0.05	2 : 0.04	] : 0.02	4 : 0.01	= : 0.01	a : 0.01	
d : 0.35	e : 0.23	] : 0.10	f : 0.08	g : 0.05	2 : 0.04	c : 0.02	3 : 0.02	4 : 0.01	5 : 0.01	: : 0.01	= : 0.01	

#score	916.3522873125221
#seq	68
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_UTR_m2_run2.txt

#BEAR
b[bbqqqqqqqqbb]b	chr3:9512186-9512453(+)$1	267	122	138	12.3064
ecccqqqqqqqqccc4	chr17:57771552-57771847(+)$1	295	162	178	14.3212
[cccqqqqqqqqccc]	chr10:102122076-102122330(+)$1	254	203	219	14.5881
[cccqqqqqqqqccc]	chr22:37621807-37622028(-)$1	221	137	153	14.5881
e[bbqqqqqqqqbb]e	chr20:23614326-23614618(-)$1	292	90	106	12.7426
eeeeqqqqqqqqeeee	chr11:95564428-95564722(+)$1	294	83	99	12.7702
ddddqqqqqqqqdddd	chr20:55982644-55982901(+)$1	257	35	51	13.2459
eeeeqqqqqqqqeeee	chr6:53213537-53213778(-)$1	241	60	76	12.7702
b[bbqqqqqqqqbbbb	chr19:55684503-55684791(-)$1	288	152	168	12.0670
eeeeqqqqqqqqeeee	chr5:133942457-133942775(-)$1	318	91	107	12.7702
bcccqqqqqqqqccc]	chr7:5645139-5645421(+)$1	282	28	44	14.2084
$cccqqqqqqqqccc4	chr1:27212404-27212655(-)$1	251	186	202	14.2590
!!bbqqqqqqqqbb22	chr7:86509522-86509803(-)$1	281	75	91	12.7530
[cccqqqqqqqqccc3	chr11:118964829-118965076(-)$1	247	221	237	14.5966
"cccqqqqqqqqccc3	chr6:158365005-158365338(+)$1	333	304	320	14.5344
:cccqqqqqqqqccc:	chr2:74333441-74333690(+)$1	249	96	112	12.7232
eeeeqqqqqqqqeeee	chr12:112036843-112037130(-)$1	287	37	53	12.7702
cc[aqqqqqqqqa]cc	chr19:48894563-48894800(-)$1	237	73	89	13.2136
:cccqqqqqqqqccc:	chr22:20920720-20921044(+)$1	324	76	92	12.7232
e[bbqqqqqqqqbb]e	chr19:49468588-49468808(+)$1	220	153	169	12.7426
iiiiqqqqqqqqiiii	chr1:47842921-47843188(+)$1	267	103	119	13.1661
====qqqqqqqq====	chr12:49332050-49332314(-)$1	264	47	63	13.3586
ccccqqqqqqqqccc]	chr17:38421037-38421337(+)$1	300	17	33	14.4056
[cccqqqqqqqqccc]	chr16:450243-450510(+)$1	267	133	149	14.5881
ccccqqqqqqqqccc]	chr9:115095699-115095912(-)$1	213	120	136	14.4056
eeeeqqqqqqqqeeee	chr17:48458941-48459206(-)$1	265	151	167	12.7702
ffffqqqqqqqqffff	chr11:66011492-66011772(+)$1	280	187	203	12.3589
[cccqqqqqqqqccc2	chr19:10427389-10427609(-)$1	220	40	56	14.4048
ffffqqqqqqqqffff	chr3:183960499-183960756(-)$1	257	75	91	12.3589
ddddqqqqqqqqdddd	chr10:73856602-73856855(-)$1	253	201	217	13.2459
'cccqqqqqqqqccc2	chr16:4740582-4740875(+)$1	293	69	85	13.7695
ddddqqqqqqqqdddd	chr1:205758456-205758744(-)$1	288	165	181	13.2459
f[bbqqqqqqqqbbff	chr20:54941930-54942188(+)$1	258	184	200	12.4675
ddddqqqqqqqqdddd	chr22:20937144-20937352(+)$1	208	79	95	13.2459
eeeeqqqqqqqqeeee	chr1:109780513-109780798(+)$1	285	29	45	12.7702
ggggqqqqqqqqgggg	chr1:110944037-110944289(-)$1	252	215	231	13.0948
!cccqqqqqqqqccc3	chr10:102123557-102123782(+)$1	225	95	111	14.6027
Ccccqqqqqqqqccc:	chr16:2569607-2569836(+)$1	229	160	176	12.6082
[cccqqqqqqqqcccc	chr3:49397317-49397553(-)$1	236	39	55	14.3330
[cccqqqqqqqqcccc	chr3:12627076-12627342(-)$1	266	164	180	14.3330
[cccqqqqqqqqccc2	chr20:48604841-48605111(+)$1	270	72	88	14.4048
:cccqqqqqqqqccc:	chr7:104752964-104753236(+)$1	272	76	92	12.7232
Ccccqqqqqqqqccc:	chr5:133533267-133533519(-)$1	252	30	46	12.6082
[cccqqqqqqqqccc]	chr11:61734940-61735149(-)$1	209	128	144	14.5881
ggggqqqqqqqqgggg	chr17:41166767-41167022(-)$1	255	145	161	13.0948
:cccqqqqqqqqccc:	chr19:6440988-6441223(-)$1	235	209	225	12.7232
ddddqqqqqqqqdddd	chr10:28884639-28884995(+)$1	356	206	222	13.2459
##bbqqqqqqqqbb33	chr16:450339-450606(+)$1	267	168	184	13.0029
eeeeqqqqqqqqeeee	chr1:38462695-38462974(-)$1	279	65	81	12.7702
d[bbqqqqqqqqbb]d	chr11:118472314-118472564(+)$1	250	115	131	12.7637
ggggqqqqqqqqgggg	chr22:30730144-30730416(-)$1	272	77	93	13.0948
!cccqqqqqqqqccc3	chr22:43015415-43015653(-)$1	238	76	92	14.6027
[cccqqqqqqqqccc]	chr11:61734906-61735112(-)$1	206	91	107	14.5881
$$bbqqqqqqqqbb44	chr1:27733181-27733432(-)$1	251	168	184	12.5652
ddddqqqqqqqqdddd	chr5:179224615-179224862(-)$1	247	200	216	13.2459
$cccqqqqqqqqccc3	chr5:10681005-10681305(-)$1	300	152	168	14.3431
ddddqqqqqqqqdddd	chr17:73841919-73842191(-)$1	272	237	253	13.2459
ddddqqqqqqqqdddd	chr17:76167903-76168167(+)$1	264	86	102	13.2459
ddddqqqqqqqqdddd	chr16:4853640-4853902(-)$1	262	159	175	13.2459
eeeeqqqqqqqqeeee	chrX:153671361-153671612(+)$1	251	4	20	12.7702
ddddqqqqqqqqdddd	chr4:48384642-48385001(+)$1	359	61	77	13.2459
ddddqqqqqqqqdddd	chr12:56387833-56388079(+)$1	246	145	161	13.2459
[cccqqqqqqqqccc]	chr17:18112038-18112369(+)$1	331	18	34	14.5881
=!!aqqqqqqqqa]==	chr12:133345870-133346170(-)$1	300	170	186	13.0950
eeeeqqqqqqqqeeee	chr19:49843574-49843916(+)$1	342	105	121	12.7702
ddddqqqqqqqqdddd	chr6:36891798-36892063(+)$1	265	68	84	13.2459
ffffqqqqqqqqffff	chr1:28361958-28362273(-)$1	315	26	42	12.3589
dcccqqqqqqqqccc3	chr19:35649149-35649372(+)$1	223	21	37	14.4294
[cccqqqqqqqqccc]	chr1:52520675-52520932(-)$1	257	37	53	14.5881
ddddqqqqqqqqdddd	chr1:207510571-207510788(+)$1	217	88	104	13.2459
ddddqqqqqqqqdddd	chr17:27050890-27051139(+)$1	249	194	210	13.2459
:cccqqqqqqqqccc:	chr17:45016923-45017193(+)$1	270	81	97	12.7232
d[bbqqqqqqqqbb]d	chr9:127911820-127912094(-)$1	274	18	34	12.7637
"cccqqqqqqqqccc]	chr7:128409650-128409872(+)$1	222	65	81	14.5260
:cccqqqqqqqqccc:	chr1:9789285-9789557(-)$1	272	164	180	12.7232

#otherMatches

#Seq PSSM
AUGGACAUCAGACCCU	chr3:9512186-9512453(+)$1	267	122	138	12.3064
CAUCGUACACUGGAUU	chr17:57771552-57771847(+)$1	295	162	178	14.3212
UUUCUCUUCCCUGAAC	chr10:102122076-102122330(+)$1	254	203	219	14.5881
UGCUGCAUCCCAAGCC	chr22:37621807-37622028(-)$1	221	137	153	14.5881
CCUAUCACCUCUUAUG	chr20:23614326-23614618(-)$1	292	90	106	12.7426
GUUGGAAUUAAUUAAU	chr11:95564428-95564722(+)$1	294	83	99	12.7702
CUCGCCCUACAUUGAG	chr20:55982644-55982901(+)$1	257	35	51	13.2459
GUGUCUCCUUCUACAU	chr6:53213537-53213778(-)$1	241	60	76	12.7702
GACACACCCAGAUGCC	chr19:55684503-55684791(-)$1	288	152	168	12.0670
GGUUACGGAGAAGGCU	chr5:133942457-133942775(-)$1	318	91	107	12.7702
CCCUUCUCCGCCAGGU	chr7:5645139-5645421(+)$1	282	28	44	14.2084
AUCCAGGUACUAGGGG	chr1:27212404-27212655(-)$1	251	186	202	14.2590
GACCAUAUUUUAGGGU	chr7:86509522-86509803(-)$1	281	75	91	12.7530
GGCUAUGUGGACAGCA	chr11:118964829-118965076(-)$1	247	221	237	14.5966
AUCAAAUGAAUAUGAG	chr6:158365005-158365338(+)$1	333	304	320	14.5344
ACAGAUUUUCUCCUGC	chr2:74333441-74333690(+)$1	249	96	112	12.7232
UGUUUUGGUAGCAACG	chr12:112036843-112037130(-)$1	287	37	53	12.7702
GGUCCCUCUUCCGUCC	chr19:48894563-48894800(-)$1	237	73	89	13.2136
agcuccaacaacagca	chr22:20920720-20921044(+)$1	324	76	92	12.7232
UAGCUCCUUCUUGCCA	chr19:49468588-49468808(+)$1	220	153	169	12.7426
CCAAGAUUUGGGUUGG	chr1:47842921-47843188(+)$1	267	103	119	13.1661
UGUGCGCCUGUAUAUA	chr12:49332050-49332314(-)$1	264	47	63	13.3586
GCCACCGACGCCUGGA	chr17:38421037-38421337(+)$1	300	17	33	14.4056
CAGGACCAACUACCUC	chr16:450243-450510(+)$1	267	133	149	14.5881
UCAGUCCCUGCUCUGU	chr9:115095699-115095912(-)$1	213	120	136	14.4056
GCAAACUCCCAGUUGC	chr17:48458941-48459206(-)$1	265	151	167	12.7702
UCUGUGGCCCCUCAGA	chr11:66011492-66011772(+)$1	280	187	203	12.3589
UGGCUGUCUCCUGCCC	chr19:10427389-10427609(-)$1	220	40	56	14.4048
CCAGUUCUACGUCUGG	chr3:183960499-183960756(-)$1	257	75	91	12.3589
gcagccaccauucugc	chr10:73856602-73856855(-)$1	253	201	217	13.2459
cgcacauacUCCUGCA	chr16:4740582-4740875(+)$1	293	69	85	13.7695
UUCCUCAUCUCUGGAA	chr1:205758456-205758744(-)$1	288	165	181	13.2459
ACAAUCUCAGCUUUUC	chr20:54941930-54942188(+)$1	258	184	200	12.4675
GUCCCCUCACCUGGAC	chr22:20937144-20937352(+)$1	208	79	95	13.2459
UUUCUGUCUGCUGAGA	chr1:109780513-109780798(+)$1	285	29	45	12.7702
UACUAAAGUUCCAGUA	chr1:110944037-110944289(-)$1	252	215	231	13.0948
UGCAUAUGAGCCUGCC	chr10:102123557-102123782(+)$1	225	95	111	14.6027
CACAGAAUAUUAUGUA	chr16:2569607-2569836(+)$1	229	160	176	12.6082
GCUACCAGUAUUUAGA	chr3:49397317-49397553(-)$1	236	39	55	14.3330
UGAGAAUCUGGGCUCC	chr3:12627076-12627342(-)$1	266	164	180	14.3330
ACAGGACAAAGGCUGA	chr20:48604841-48605111(+)$1	270	72	88	14.4048
AGAACCCUACCAUUCA	chr7:104752964-104753236(+)$1	272	76	92	12.7232
CGUCGUACCCCAGACU	chr5:133533267-133533519(-)$1	252	30	46	12.6082
CGGCCGCCCAUAGCCA	chr11:61734940-61735149(-)$1	209	128	144	14.5881
GGUCAGGACCUGGGCC	chr17:41166767-41167022(-)$1	255	145	161	13.0948
UGGGUCCCCAAUCCCU	chr19:6440988-6441223(-)$1	235	209	225	12.7232
UAGUCCAUUUACGCUA	chr10:28884639-28884995(+)$1	356	206	222	13.2459
UUCUGUACCCCAAGCC	chr16:450339-450606(+)$1	267	168	184	13.0029
CAGGGCCCCAAACCUG	chr1:38462695-38462974(-)$1	279	65	81	12.7702
UCCUUCCAGUUUAGAA	chr11:118472314-118472564(+)$1	250	115	131	12.7637
AGGACAUUCAUUUCUU	chr22:30730144-30730416(-)$1	272	77	93	13.0948
UCAGAGUACGUCCUGC	chr22:43015415-43015653(-)$1	238	76	92	14.6027
CGGCCGCCCAUAGCCA	chr11:61734906-61735112(-)$1	206	91	107	14.5881
CAGGUCCUGUUUCCAG	chr1:27733181-27733432(-)$1	251	168	184	12.5652
AAGUCCACAUAUACUU	chr5:179224615-179224862(-)$1	247	200	216	13.2459
AGCCUGCCCCAUGGCC	chr5:10681005-10681305(-)$1	300	152	168	14.3431
AACAUUCACUCUUGUU	chr17:73841919-73842191(-)$1	272	237	253	13.2459
GGGCUACCAGCCGCCC	chr17:76167903-76168167(+)$1	264	86	102	13.2459
UUUCAGAGAUUAGAAA	chr16:4853640-4853902(-)$1	262	159	175	13.2459
CAACUCUCGCGUGUUG	chrX:153671361-153671612(+)$1	251	4	20	12.7702
GAUGACAAUAUGCAUC	chr4:48384642-48385001(+)$1	359	61	77	13.2459
CUUCCUUUCCCAGAAG	chr12:56387833-56388079(+)$1	246	145	161	13.2459
UUUUGGUUAAGAAAAU	chr17:18112038-18112369(+)$1	331	18	34	14.5881
GCUGGCCCUCAACUCU	chr12:133345870-133346170(-)$1	300	170	186	13.0950
GGAGCCCUCCGCCUUC	chr19:49843574-49843916(+)$1	342	105	121	12.7702
AAGGUAAUGCUUUCUU	chr6:36891798-36892063(+)$1	265	68	84	13.2459
UUUUUCGUUACUAAAG	chr1:28361958-28362273(-)$1	315	26	42	12.3589
AUCUCCACCCAUAGAC	chr19:35649149-35649372(+)$1	223	21	37	14.4294
GUUUGAAAAAAAAAAA	chr1:52520675-52520932(-)$1	257	37	53	14.5881
UGCUCAUAUUACAGCA	chr1:207510571-207510788(+)$1	217	88	104	13.2459
GAUCAUUCCAGAGAUC	chr17:27050890-27051139(+)$1	249	194	210	13.2459
CUUCUCUUCCCUGAAA	chr17:45016923-45017193(+)$1	270	81	97	12.7232
GUGGAAAUAUUGCUUC	chr9:127911820-127912094(-)$1	274	18	34	12.7637
AAAAGUCCAACAUUUC	chr7:128409650-128409872(+)$1	222	65	81	14.5260
AUGGUCUAAAACCCAC	chr1:9789285-9789557(-)$1	272	164	180	12.7232

#DB
(.((........)).)	chr3:9512186-9512453(+)$1	1	122	138	12.3064
((((........))).	chr17:57771552-57771847(+)$1	1	162	178	14.3212
.(((........))).	chr10:102122076-102122330(+)$1	1	203	219	14.5881
.(((........))).	chr22:37621807-37622028(-)$1	1	137	153	14.5881
(.((........)).)	chr20:23614326-23614618(-)$1	1	90	106	12.7426
((((........))))	chr11:95564428-95564722(+)$1	1	83	99	12.7702
((((........))))	chr20:55982644-55982901(+)$1	1	35	51	13.2459
((((........))))	chr6:53213537-53213778(-)$1	1	60	76	12.7702
(.((........))))	chr19:55684503-55684791(-)$1	1	152	168	12.0670
((((........))))	chr5:133942457-133942775(-)$1	1	91	107	12.7702
((((........))).	chr7:5645139-5645421(+)$1	1	28	44	14.2084
.(((........))).	chr1:27212404-27212655(-)$1	1	186	202	14.2590
..((........))..	chr7:86509522-86509803(-)$1	1	75	91	12.7530
.(((........))).	chr11:118964829-118965076(-)$1	1	221	237	14.5966
.(((........))).	chr6:158365005-158365338(+)$1	1	304	320	14.5344
.(((........))).	chr2:74333441-74333690(+)$1	1	96	112	12.7232
((((........))))	chr12:112036843-112037130(-)$1	1	37	53	12.7702
((.(........).))	chr19:48894563-48894800(-)$1	1	73	89	13.2136
.(((........))).	chr22:20920720-20921044(+)$1	1	76	92	12.7232
(.((........)).)	chr19:49468588-49468808(+)$1	1	153	169	12.7426
((((........))))	chr1:47842921-47843188(+)$1	1	103	119	13.1661
((((........))))	chr12:49332050-49332314(-)$1	1	47	63	13.3586
((((........))).	chr17:38421037-38421337(+)$1	1	17	33	14.4056
.(((........))).	chr16:450243-450510(+)$1	1	133	149	14.5881
((((........))).	chr9:115095699-115095912(-)$1	1	120	136	14.4056
((((........))))	chr17:48458941-48459206(-)$1	1	151	167	12.7702
((((........))))	chr11:66011492-66011772(+)$1	1	187	203	12.3589
.(((........))).	chr19:10427389-10427609(-)$1	1	40	56	14.4048
((((........))))	chr3:183960499-183960756(-)$1	1	75	91	12.3589
((((........))))	chr10:73856602-73856855(-)$1	1	201	217	13.2459
.(((........))).	chr16:4740582-4740875(+)$1	1	69	85	13.7695
((((........))))	chr1:205758456-205758744(-)$1	1	165	181	13.2459
(.((........))))	chr20:54941930-54942188(+)$1	1	184	200	12.4675
((((........))))	chr22:20937144-20937352(+)$1	1	79	95	13.2459
((((........))))	chr1:109780513-109780798(+)$1	1	29	45	12.7702
((((........))))	chr1:110944037-110944289(-)$1	1	215	231	13.0948
.(((........))).	chr10:102123557-102123782(+)$1	1	95	111	14.6027
)(((........))).	chr16:2569607-2569836(+)$1	1	160	176	12.6082
.(((........))))	chr3:49397317-49397553(-)$1	1	39	55	14.3330
.(((........))))	chr3:12627076-12627342(-)$1	1	164	180	14.3330
.(((........))).	chr20:48604841-48605111(+)$1	1	72	88	14.4048
.(((........))).	chr7:104752964-104753236(+)$1	1	76	92	12.7232
((((........))).	chr5:133533267-133533519(-)$1	1	30	46	12.6082
.(((........))).	chr11:61734940-61735149(-)$1	1	128	144	14.5881
((((........))))	chr17:41166767-41167022(-)$1	1	145	161	13.0948
.(((........))).	chr19:6440988-6441223(-)$1	1	209	225	12.7232
((((........))))	chr10:28884639-28884995(+)$1	1	206	222	13.2459
..((........))..	chr16:450339-450606(+)$1	1	168	184	13.0029
((((........))))	chr1:38462695-38462974(-)$1	1	65	81	12.7702
(.((........)).)	chr11:118472314-118472564(+)$1	1	115	131	12.7637
((((........))))	chr22:30730144-30730416(-)$1	1	77	93	13.0948
.(((........))).	chr22:43015415-43015653(-)$1	1	76	92	14.6027
.(((........))).	chr11:61734906-61735112(-)$1	1	91	107	14.5881
..((........))..	chr1:27733181-27733432(-)$1	1	168	184	12.5652
((((........))))	chr5:179224615-179224862(-)$1	1	200	216	13.2459
.(((........))).	chr5:10681005-10681305(-)$1	1	152	168	14.3431
((((........))))	chr17:73841919-73842191(-)$1	1	237	253	13.2459
((((........))))	chr17:76167903-76168167(+)$1	1	86	102	13.2459
((((........))))	chr16:4853640-4853902(-)$1	1	159	175	13.2459
((((........))))	chrX:153671361-153671612(+)$1	1	4	20	12.7702
((((........))))	chr4:48384642-48385001(+)$1	1	61	77	13.2459
((((........))))	chr12:56387833-56388079(+)$1	1	145	161	13.2459
.(((........))).	chr17:18112038-18112369(+)$1	1	18	34	14.5881
(..(........).))	chr12:133345870-133346170(-)$1	1	170	186	13.0950
((((........))))	chr19:49843574-49843916(+)$1	1	105	121	12.7702
((((........))))	chr6:36891798-36892063(+)$1	1	68	84	13.2459
((((........))))	chr1:28361958-28362273(-)$1	1	26	42	12.3589
((((........))).	chr19:35649149-35649372(+)$1	1	21	37	14.4294
.(((........))).	chr1:52520675-52520932(-)$1	1	37	53	14.5881
((((........))))	chr1:207510571-207510788(+)$1	1	88	104	13.2459
((((........))))	chr17:27050890-27051139(+)$1	1	194	210	13.2459
.(((........))).	chr17:45016923-45017193(+)$1	1	81	97	12.7232
(.((........)).)	chr9:127911820-127912094(-)$1	1	18	34	12.7637
.(((........))).	chr7:128409650-128409872(+)$1	1	65	81	14.5260
.(((........))).	chr1:9789285-9789557(-)$1	1	164	180	12.7232

#PSSM
d : 0.22	e : 0.16	[ : 0.16	: : 0.08	f : 0.05	b : 0.04	$ : 0.04	! : 0.04	c : 0.04	g : 0.04	" : 0.02	= : 0.02	C : 0.02	i : 0.01	' : 0.01	# : 0.01	
c : 0.43	d : 0.18	e : 0.12	[ : 0.09	f : 0.04	g : 0.04	! : 0.02	i : 0.01	= : 0.01	# : 0.01	$ : 0.01	
c : 0.42	d : 0.18	b : 0.13	e : 0.12	f : 0.04	g : 0.04	[ : 0.01	i : 0.01	= : 0.01	! : 0.01	
c : 0.42	d : 0.18	b : 0.13	e : 0.12	f : 0.04	g : 0.04	a : 0.02	i : 0.01	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.42	d : 0.18	b : 0.13	e : 0.12	f : 0.04	g : 0.04	a : 0.02	i : 0.01	= : 0.01	
c : 0.42	d : 0.18	b : 0.13	e : 0.12	f : 0.04	g : 0.04	] : 0.02	i : 0.01	= : 0.01	
c : 0.43	d : 0.18	e : 0.12	] : 0.06	f : 0.05	g : 0.04	= : 0.02	b : 0.01	2 : 0.01	i : 0.01	3 : 0.01	4 : 0.01	
d : 0.21	] : 0.14	e : 0.14	: : 0.10	3 : 0.09	2 : 0.05	f : 0.05	4 : 0.04	c : 0.04	g : 0.04	b : 0.02	= : 0.02	i : 0.01	

#score	1003.8990037576121
#seq	75
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_CDS_m2_run1.txt

#BEAR
ddddmmmmdddd	chr6:37139166-37139392(+)$1	226	34	46	9.4130
ddddmmmmdddd	chr17:4686007-4686270(+)$1	263	12	24	9.4130
ddddmmmmdddd	chr2:128180682-128180991(+)$1	309	12	24	9.4130
ddddmmmmdddd	chr20:60856116-60856361(+)$1	245	104	116	9.4130
[ddddllldddd	chr3:48451382-48451604(-)$1	222	168	180	7.4511
ddddmmmmdddd	chr7:142962095-142962413(+)$1	318	248	260	9.4130
!cccmmmmcccd	chr16:67983707-67984038(-)$1	331	246	258	6.8598
ddddmmmmdddd	chr22:50354825-50355088(+)$1	263	27	39	9.4130
ddddmmmmdddd	chr7:142962001-142962239(+)$1	238	107	119	9.4130
ddddmmmmdddd	chr20:56138169-56138419(+)$1	250	111	123	9.4130
[cccmmmmccc]	chr17:77078044-77078299(+)$1	255	32	44	6.2466
ddddmmmmdddd	chr1:44442124-44442392(+)$1	268	231	243	9.4130
[cccmmmmccc]	chr11:67810675-67810936(+)$1	261	160	172	6.2466
[ddddllldddd	chr3:48451341-48451548(-)$1	207	112	124	7.4511
ddddmmmmdddd	chr16:67984709-67984966(-)$1	257	57	69	9.4130
ddddmmmmdddd	chr20:62373115-62373359(+)$1	244	13	25	9.4130
ddddoooooodd	chr1:145441068-145441318(+)$1	250	75	87	6.9879
ddddmmmmdddd	chr6:134493183-134493437(-)$1	254	47	59	9.4130
ddddoooooodd	chrM:14157-14381(-)$1	224	45	57	6.9879
[ddddllldddd	chr9:139904666-139904966(-)$1	300	129	141	7.4511
ddddmmmmdddd	chr16:50582551-50582813(+)$1	262	187	199	9.4130
[ddddllldddd	chr16:67984010-67984326(-)$1	316	27	39	7.4511
ddddmmmmdddd	chr19:46357608-46357893(-)$1	285	56	68	9.4130
ddddoooooodd	chr1:43212718-43212989(-)$1	271	30	42	6.9879
ddddmmmmdddd	chrM:10250-10469(+)$1	219	176	188	9.4130
ddddmmmmdddd	chr1:11718441-11718755(+)$1	314	58	70	9.4130
ddddmmmmdddd	chr20:61452781-61453044(+)$1	263	162	174	9.4130
ddddoooooodd	chr17:7010948-7011255(-)$1	307	214	226	6.9879
[cccmmmmcccd	chr1:1289508-1289782(-)$1	274	29	41	6.8581
ddddmmmmdddd	chr7:73010686-73010948(-)$1	262	224	236	9.4130
ddddmmmmdddd	chr16:67976993-67977279(-)$1	286	153	165	9.4130
"ddddllldddd	chr14:35872778-35872996(-)$1	218	145	157	7.3151
ddddoooooodd	chr17:74381954-74382203(+)$1	249	216	228	6.9879
[cccmmmmccc]	chr7:100282732-100283073(-)$1	341	38	50	6.2466
ddddmmmmdddd	chr3:5021991-5022271(+)$1	280	176	188	9.4130
ddddmmmmdddd	chr17:73871336-73871584(-)$1	248	26	38	9.4130
ddddmmmmdddd	chr9:140347388-140347614(-)$1	226	60	72	9.4130
ddddmmmmdddd	chr1:11718308-11718608(+)$1	300	73	85	9.4130
!cccmmmmccc4	chrM:14367-14600(-)$1	233	137	149	6.2878

#otherMatches

#Seq PSSM
GAGCUCAAGCUC	chr6:37139166-37139392(+)$1	226	34	46	9.4130
CUCGACUUCGAG	chr17:4686007-4686270(+)$1	263	12	24	9.4130
CAGCUUCAGCUG	chr2:128180682-128180991(+)$1	309	12	24	9.4130
GGUGACAGCACC	chr20:60856116-60856361(+)$1	245	104	116	9.4130
CUGGUGAAGCCA	chr3:48451382-48451604(-)$1	222	168	180	7.4511
UUCUUCCCAGAA	chr7:142962095-142962413(+)$1	318	248	260	9.4130
ACCCACAUGGGC	chr16:67983707-67984038(-)$1	331	246	258	6.8598
GCGGGUAGCCGC	chr22:50354825-50355088(+)$1	263	27	39	9.4130
UCACCGCCGUGA	chr7:142962001-142962239(+)$1	238	107	119	9.4130
CAGGAAGCCCUG	chr20:56138169-56138419(+)$1	250	111	123	9.4130
GAUGUGUACGUG	chr17:77078044-77078299(+)$1	255	32	44	6.2466
GGAAUCCAUUCC	chr1:44442124-44442392(+)$1	268	231	243	9.4130
AGCUUUGUGGCA	chr11:67810675-67810936(+)$1	261	160	172	6.2466
CUGGUGAAGCCA	chr3:48451341-48451548(-)$1	207	112	124	7.4511
UCCCUGUGGGGA	chr16:67984709-67984966(-)$1	257	57	69	9.4130
GUCUCACCGGAC	chr20:62373115-62373359(+)$1	244	13	25	9.4130
GUUCUUACCUGA	chr1:145441068-145441318(+)$1	250	75	87	6.9879
CUCUGCAAGGAG	chr6:134493183-134493437(-)$1	254	47	59	9.4130
GGUUGUGGUAAA	chrM:14157-14381(-)$1	224	45	57	6.9879
AGGCUCCUGGCC	chr9:139904666-139904966(-)$1	300	129	141	7.4511
GGUCUUAUGACC	chr16:50582551-50582813(+)$1	262	187	199	9.4130
GCUGGCCUCCAG	chr16:67984010-67984326(-)$1	316	27	39	7.4511
GGGUGACAAUCC	chr19:46357608-46357893(-)$1	285	56	68	9.4130
CUCGACACAGCG	chr1:43212718-43212989(-)$1	271	30	42	6.9879
CGAAUGAUUUCG	chrM:10250-10469(+)$1	219	176	188	9.4130
GGGGUCUCUCCC	chr1:11718441-11718755(+)$1	314	58	70	9.4130
UGGGAUGUCCCA	chr20:61452781-61453044(+)$1	263	162	174	9.4130
gugCCUGCAAGC	chr17:7010948-7011255(-)$1	307	214	226	6.9879
CGCCCGCAGGCG	chr1:1289508-1289782(-)$1	274	29	41	6.8581
CCUCAGCCGGGG	chr7:73010686-73010948(-)$1	262	224	236	9.4130
GCUGCUCACAGU	chr16:67976993-67977279(-)$1	286	153	165	9.4130
AGCUGAUGUAGC	chr14:35872778-35872996(-)$1	218	145	157	7.3151
AGCCCCUUUUGG	chr17:74381954-74382203(+)$1	249	216	228	6.9879
UGGGCCCACUCU	chr7:100282732-100283073(-)$1	341	38	50	6.2466
UUCCGCGGGGAA	chr3:5021991-5022271(+)$1	280	176	188	9.4130
CAGCUGAUGCUG	chr17:73871336-73871584(-)$1	248	26	38	9.4130
AGGCUGUGGCCU	chr9:140347388-140347614(-)$1	226	60	72	9.4130
UCUCUCUCGAGA	chr1:11718308-11718608(+)$1	300	73	85	9.4130
CAGCGAUGGCUA	chrM:14367-14600(-)$1	233	137	149	6.2878

#DB
((((....))))	chr6:37139166-37139392(+)$1	1	34	46	9.4130
((((....))))	chr17:4686007-4686270(+)$1	1	12	24	9.4130
((((....))))	chr2:128180682-128180991(+)$1	1	12	24	9.4130
((((....))))	chr20:60856116-60856361(+)$1	1	104	116	9.4130
.((((...))))	chr3:48451382-48451604(-)$1	1	168	180	7.4511
((((....))))	chr7:142962095-142962413(+)$1	1	248	260	9.4130
.(((....))))	chr16:67983707-67984038(-)$1	1	246	258	6.8598
((((....))))	chr22:50354825-50355088(+)$1	1	27	39	9.4130
((((....))))	chr7:142962001-142962239(+)$1	1	107	119	9.4130
((((....))))	chr20:56138169-56138419(+)$1	1	111	123	9.4130
.(((....))).	chr17:77078044-77078299(+)$1	1	32	44	6.2466
((((....))))	chr1:44442124-44442392(+)$1	1	231	243	9.4130
.(((....))).	chr11:67810675-67810936(+)$1	1	160	172	6.2466
.((((...))))	chr3:48451341-48451548(-)$1	1	112	124	7.4511
((((....))))	chr16:67984709-67984966(-)$1	1	57	69	9.4130
((((....))))	chr20:62373115-62373359(+)$1	1	13	25	9.4130
((((......))	chr1:145441068-145441318(+)$1	1	75	87	6.9879
((((....))))	chr6:134493183-134493437(-)$1	1	47	59	9.4130
((((......))	chrM:14157-14381(-)$1	1	45	57	6.9879
.((((...))))	chr9:139904666-139904966(-)$1	1	129	141	7.4511
((((....))))	chr16:50582551-50582813(+)$1	1	187	199	9.4130
.((((...))))	chr16:67984010-67984326(-)$1	1	27	39	7.4511
((((....))))	chr19:46357608-46357893(-)$1	1	56	68	9.4130
((((......))	chr1:43212718-43212989(-)$1	1	30	42	6.9879
((((....))))	chrM:10250-10469(+)$1	1	176	188	9.4130
((((....))))	chr1:11718441-11718755(+)$1	1	58	70	9.4130
((((....))))	chr20:61452781-61453044(+)$1	1	162	174	9.4130
((((......))	chr17:7010948-7011255(-)$1	1	214	226	6.9879
.(((....))))	chr1:1289508-1289782(-)$1	1	29	41	6.8581
((((....))))	chr7:73010686-73010948(-)$1	1	224	236	9.4130
((((....))))	chr16:67976993-67977279(-)$1	1	153	165	9.4130
.((((...))))	chr14:35872778-35872996(-)$1	1	145	157	7.3151
((((......))	chr17:74381954-74382203(+)$1	1	216	228	6.9879
.(((....))).	chr7:100282732-100283073(-)$1	1	38	50	6.2466
((((....))))	chr3:5021991-5022271(+)$1	1	176	188	9.4130
((((....))))	chr17:73871336-73871584(-)$1	1	26	38	9.4130
((((....))))	chr9:140347388-140347614(-)$1	1	60	72	9.4130
((((....))))	chr1:11718308-11718608(+)$1	1	73	85	9.4130
.(((....))).	chrM:14367-14600(-)$1	1	137	149	6.2878

#PSSM
d : 0.71	[ : 0.20	! : 0.05	" : 0.02	
d : 0.84	c : 0.15	
d : 0.84	c : 0.15	
d : 0.84	c : 0.15	
m : 0.74	d : 0.12	o : 0.12	
m : 0.74	l : 0.12	o : 0.12	
m : 0.74	l : 0.12	o : 0.12	
m : 0.74	l : 0.12	o : 0.12	
d : 0.71	c : 0.15	o : 0.12	
d : 0.71	c : 0.15	o : 0.12	
d : 0.84	c : 0.15	
d : 0.89	] : 0.07	4 : 0.02	

#score	327.304467348
#seq	39
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_UTR_m1_run1.txt

#BEAR
ggggg:eeeee[ddddoooooodddd22eeeee:a[eee	chr16:88722017-88722268(-)$1	251	75	114	13.4377
Ibb[dddd####ddddoooooodddd4444dddd]bb:J	chr5:176738413-176738692(-)$1	279	91	130	13.3915
dd!!eeeeebbccc[aooooooa]ccc]bb4444eeeee	chr17:79864658-79864924(-)$1	266	18	57	13.3848
dddd!!bb[a!!ddddoooooodddd22a]bb22ddddg	chr19:35500211-35500444(+)$1	233	9	48	15.6699
iiiiiiii!!ccccccpppppppccc]ccciiiiiiiii	chr14:24610404-24610672(-)$1	268	133	172	12.3862
=======!!bb[eeeeennnnneeeee]bb333======	chr3:23959773-23960040(+)$1	267	37	76	13.0292
ggg!!ccc[ccc!!cccooooooccc22ccc]ccc22gg	chr12:56488880-56489186(+)$1	306	34	73	16.1220
[dddd[cccccc[cccmmmmcccccc22ccc]dddd]bb	chr2:131100665-131100910(+)$1	245	9	48	11.4795
ffff[ffffff!!cccooooooccc22ffffffffffff	chr2:238483617-238483896(-)$1	279	66	105	13.1461
::ggggggga!!ddddoooooodddd22a]ggggggg:e	chr11:64534876-64535140(-)$1	264	155	194	15.3702
bbffffff!!ccc[cccooooooccc22ccc4444ffff	chr8:42952651-42952907(+)$1	256	114	153	15.0425
iiii!!bb"""ddddpppppppdddd22bbiiiiiiiii	chr3:52029360-52029625(-)$1	265	161	200	13.2475
ggggggccc"""ddddoooooodddd22ccc]ggggggg	chr4:152025170-152025447(+)$1	277	115	154	19.0091
fffdddd[a[a!!bbrrrrrrrrrbb22aadddd]ffff	chr19:10464561-10464819(-)$1	258	84	123	11.7192
========="""ddddmmmmdddd]==========ccc]	chr2:128180646-128180875(+)$1	229	156	195	14.6826
eee!!cccbb[cccddddllldddd333ccc]bb]ccc2	chr17:48560688-48560938(+)$1	250	26	65	13.2249
[bbeeeee####ddddooooooddddeeeee]bb]bb::	chr12:124110874-124111188(-)$1	314	72	111	13.2489
####dddd$$$$$cccooooooccc22dddd333cccee	chr2:241536130-241536412(+)$1	282	145	184	15.5053
==========bb!!ddddmmmmdddd22bb::=======	chr12:53343328-53343591(-)$1	263	65	104	12.2290
[==========[eeeeemmmmeeeee]==========]f	chr11:18422452-18422700(+)$1	248	191	230	13.4912
hhhhhhh"""ccc[cccooooooccc]ccc333hhhhhh	chr11:75113273-75113547(+)$1	274	177	216	13.5812
cc[dddd####eeeeeooooooeeeee333dddd]ccc4	chr1:17928501-17928790(+)$1	289	163	202	15.1973
"""a[eeeee####bboooooobb22eeeee]a333ccc	chr12:56435847-56436120(+)$1	273	121	160	13.0631
::==========[ddddnnnnndddd22==========:	chr19:55899315-55899557(+)$1	242	178	217	13.7664
eeeee[ccc[ccc"""bboooooobb22cccccc333ee	chr20:33734818-33735092(-)$1	274	172	211	12.5709
ii[eeeee!!bb[ddddnnnnndddd]bb4444eeeee]	chr19:46026850-46027088(+)$1	238	130	169	12.8165
ddd!!dddd"""ddddrrrrrrrrrdddd]dddd]dddd	chr12:57486601-57486848(+)$1	247	181	220	11.6582
cc"""===========oooooo===========333ccc	chr9:116831861-116832142(-)$1	281	46	85	16.4930
++ggggggg!!bb[cccooooooccc22bb]ggggggg]	chr11:10819262-10819536(-)$1	274	17	56	14.7669
"""eeeee####ddddoooooodddd333eeeee4444c	chr2:207025953-207026183(+)$1	230	158	197	17.9944
a[a[dddd####ccc[ammmma]ccc4444dddd]a]a]	chr22:32000830-32001070(+)$1	240	194	233	14.4334
==========ddddqqqqqqqqdddd22===========	chr16:1747676-1748005(+)$1	329	226	265	13.4538
eee!!a####dddd[ddddllldddd]dddd4444a22e	chr16:72144872-72145119(+)$1	247	70	109	11.8480
a[==========[ddddnnnnndddd]==========]a	chr14:74192592-74192847(-)$1	255	172	211	15.9222
c[==========[bbaooooooa]bb]==========]c	chr3:48670993-48671238(-)$1	245	122	161	16.5053
[cccccc[a"""ddddoooooodddd333a]ccc]ccc2	chr13:50571713-50571956(+)$1	243	150	189	18.6258
[a[ggggggg!!ddddooooooddddggggggg333a]d	chr16:67143848-67144153(+)$1	305	235	274	16.8588
b[ccc!!dddd!!cccammmma]ccc22dddd22ccc]b	chr19:56170610-56170815(+)$1	205	10	49	12.1084
========"""ccc[aooooooaccc333==========	chr15:89164509-89164794(+)$1	285	168	207	19.8344
adddd[bb####ddddnnnnndddd4444bb]dddd]a]	chr1:44445080-44445331(+)$1	251	79	118	13.6791
=affffff"""a[ccc[ammmma]ccc]a333ffffff]	chrX:2747882-2748209(+)$1	327	166	205	12.5629
cggggggg####ddddoooooodddd]ggggggg]cccb	chr16:16253320-16253608(-)$1	288	188	227	17.9320
ggg[ggggggg[eeeeellleeeee4444ggggggg]gg	chr7:72992643-72992850(-)$1	207	7	46	12.7218
hhhh!!ccc!!cccrrrrrrrrrccc333ccchhhhhhh	chr6:31655948-31656212(-)$1	264	123	162	12.8089
!!ffffff"""bb[bboooooobb]bb333ffffff22c	chr8:144679379-144679647(-)$1	268	108	147	12.9068
fffff[ccc[a[acccnnnnnccc]a]a]ccc]ffffff	chr1:1326167-1326411(-)$1	244	111	150	12.0037
eee!!dddd[dddd[aooooooa]dddd22ddddeeeee	chr6:32138576-32138816(-)$1	240	71	110	12.9476
eeee[dddd####cccooooooccc4444dddd]eeeee	chr19:14040351-14040641(+)$1	290	165	204	15.9279
ggg"""ccc"""cccnnnnncccccc22gggggggdddd	chr12:131356845-131357083(+)$1	238	144	183	13.5634
b[dddd[dddd[acccooooooccc]a]dddddddd]bb	chr16:89627670-89627912(+)$1	242	45	84	12.8147
ee"""bb[ccc!!ddddmmmmdddd333ccc22bb4444	chr20:23401803-23402078(-)$1	275	66	105	12.5020
gggggggggg[cccrrrrrrrrrccc]ggggggg]gggg	chr3:50388667-50388962(+)$1	295	78	117	13.3812
$$$$$gggggggddddoooooodddd4444gggggggdd	chr2:75787662-75787912(-)$1	250	198	237	15.7947

#otherMatches

#Seq PSSM
UCCUUGGGGCUGGCCCCCUGCAGGGUGUGGCCCAGGCUG	chr16:88722017-88722268(-)$1	251	75	114	13.4377
GGGUGGGGGAAAUGGUCCUGGCGCCAAAAGCCUUUCCUU	chr5:176738413-176738692(-)$1	279	91	130	13.3915
GUGUGUCCCCUGCCCGAGAUGACUGGCUGGAAAUGGGAU	chr17:79864658-79864924(-)$1	266	18	57	13.3848
CCGCAACAGCAAGGUUGGUGCAAGCCCAGGUGGGGUGGG	chr19:35500211-35500444(+)$1	233	9	48	15.6699
UGCUUCCCGUCCAGGCCUCGCUCGCCAUGGGGGAGGUGG	chr14:24610404-24610672(-)$1	268	133	172	12.3862
UAUUAGAUAGCAUUAACUUACUGUUGAAGUAUUUUUGGU	chr3:23959773-23960040(+)$1	267	37	76	13.0292
GAUCAGCUCUGGGCUCCAGGAUGGGAUGCCACGGUAAGU	chr12:56488880-56489186(+)$1	306	34	73	16.1220
GCCUGCGCCGCGAGUACCUGUACCGCAAGGCCCGGGAGG	chr2:131100665-131100910(+)$1	245	9	48	11.4795
GCUGUGCUGGGCUGGGCGACUUCCCUCCCUAGCCAGCCC	chr2:238483617-238483896(-)$1	279	66	105	13.1461
CAGGUCGCUGUUGGCUAGAAGCAGCUCUCAAGUGGCUGG	chr11:64534876-64535140(-)$1	264	155	194	15.3702
gugcugcuggcucacgcagcgggguggaggggaagggca	chr8:42952651-42952907(+)$1	256	114	153	15.0425
AGAACCACACCACACACAACCAGUGUAAGUUUUUUGGGC	chr3:52029360-52029625(-)$1	265	161	200	13.2475
AACUAGGACUUUUAGAAAAAAAUUUACUGUUACUGGUUU	chr4:152025170-152025447(+)$1	277	115	154	19.0091
GCUGCUGCGAGGACCAAGGUGGGCGGGACCCGGCGAGUC	chr19:10464561-10464819(-)$1	258	84	123	11.7192
GGGGCGCGGCACCAGCACCAGCUGCCCGCGCCCUCCCCU	chr2:128180646-128180875(+)$1	229	156	195	14.6826
UUUAUGCCCCAGGGGGCUGGAGGCCACACCCGGGAGGCU	chr17:48560688-48560938(+)$1	250	26	65	13.2249
UGUCCACAUUAGGUGACAUACAUCACUGUGGUACUGUCU	chr12:124110874-124111188(-)$1	314	72	111	13.2489
CCCCGCUGCGUCCGCAUCACUCUGCAUCAGCACUGCCGG	chr2:241536130-241536412(+)$1	282	145	184	15.5053
GUGGCUAGGUGCGCGGAUGGAAAUCCAGGUAUGCCCAAC	chr12:53343328-53343591(-)$1	263	65	104	12.2290
ugaaauauuuuaaaaaauacauuuuuaaaaauauuuucg	chr11:18422452-18422700(+)$1	248	191	230	13.4912
CUCUGCGUUACAAACUCCUAGGAGGGCUUGCUGUGCGGA	chr11:75113273-75113547(+)$1	274	177	216	13.5812
UUCUCCGGGGCCCGGCACUCCAGCUGGAAGCGGAAGAGU	chr1:17928501-17928790(+)$1	289	163	202	15.1973
UGGUGAGGGUGGGGGUUCGGGUGCAGACUCUGGGAUUGU	chr12:56435847-56436120(+)$1	273	121	160	13.0631
UAUGGGCUGGAGAGGGAUGGAUUCUUGCUUUCAGCCUAC	chr19:55899315-55899557(+)$1	242	178	217	13.7664
UGGGAAGCGUGAACCCGGUCCUUUCCCUUUCCGUCCAUC	chr20:33734818-33735092(-)$1	274	172	211	12.5709
AUCUCUUAGGCCGUACCAUGAGGGUAGGGAUAGUGGGAU	chr19:46026850-46027088(+)$1	238	130	169	12.8165
GGGCAGCCUUCCCCAAUCCCCUCCCUUGGCAGGUCUUCA	chr12:57486601-57486848(+)$1	247	181	220	11.6582
CAAAUCCGGGUCUAGGAUGGCCCCUGGGCCUGGUCCUGU	chr9:116831861-116832142(-)$1	281	46	85	16.4930
AUUCUAAAACUGUGUAGUACCACCUAAAACUUUUUGGAU	chr11:10819262-10819536(-)$1	274	17	56	14.7669
CGAUGUGGAAGACACUACAGGAAGUGGAGCUACAGAUAG	chr2:207025953-207026183(+)$1	230	158	197	17.9944
CGGGGAUGAUCCCGGGUUCCUAGUCGCUAAUAUCAUGGU	chr22:32000830-32001070(+)$1	240	194	233	14.4334
UAUUUCUGGAAGAGUUGCUAGUCUCUCCUCUGGGAAUGA	chr16:1747676-1748005(+)$1	329	226	265	13.4538
AGCAGGAGAAGCGCAGCCCCCUGGGCAGUGUCAGGUGAG	chr16:72144872-72145119(+)$1	247	70	109	11.8480
GGCCCUGCUCAGUGCUGAGUCACAGCCCUGGGUGGGGGC	chr14:74192592-74192847(-)$1	255	172	211	15.9222
UUGGGCCAGGGAUGCCUUCACUGUGUCUCUCUGGUCUUG	chr3:48670993-48671238(-)$1	245	122	161	16.5053
AACCCUGCCAAAUACAUCAGCUUGUAGGAGACAGAGGUA	chr13:50571713-50571956(+)$1	243	150	189	18.6258
GGACCUGGAGGUAGUGCCCGAACGCUCUCUGGGGAACGA	chr16:67143848-67144153(+)$1	305	235	274	16.8588
CUCGGAGCCGGGACCGCAAACGCCGGAGCCGGAGCCGCG	chr19:56170610-56170815(+)$1	205	10	49	12.1084
CGCAGGUCCCCGCGCGUUGUUUCCGCCCCGGCCUGCGGC	chr15:89164509-89164794(+)$1	285	168	207	19.8344
CCCCUGCUGAGCCCCGAGCGCCGGGUGAGAGGAGGGCGC	chr1:44445080-44445331(+)$1	251	79	118	13.6791
ACUGGCGGGGCCUGCAGCCGAGGGUGUCGAGACUGCCAC	chrX:2747882-2748209(+)$1	327	166	205	12.5629
GGUUGUUCGCAACUGGACAGACCUAGAGAACAGCAUCGU	chr16:16253320-16253608(-)$1	288	188	227	17.9320
UCGGUGUUGCUUGGGCUGCUGGCCCUGAUGGCGACGGCG	chr7:72992643-72992850(-)$1	207	7	46	12.7218
UCUGAAGAUACCAGGGUCCUGUACUGCUGAUCCGGAGAA	chr6:31655948-31656212(-)$1	264	123	162	12.8089
UCGCCGCGUCCUUGGCUGGCGUGUGAGUACCGCGGCCCC	chr8:144679379-144679647(-)$1	268	108	147	12.9068
GAAGACCUGGGUUCCCGGGUGGGGCAUUGCAGUUCUUCC	chr1:1326167-1326411(-)$1	244	111	150	12.0037
CUCCAACCACCAGAGCUCUCUCGAUCUGCUUGGUGAGAC	chr6:32138576-32138816(-)$1	240	71	110	12.9476
GAUAGGCAUGGGGGGGGAGGUGCUCAGGGAUGCAUAUCU	chr19:14040351-14040641(+)$1	290	165	204	15.9279
cucccAGGCCUGGCCGCCAUGGCGCCGCGGGCGGGAGGC	chr12:131356845-131357083(+)$1	238	144	183	13.5634
CACGGUUCGGUACCACACGAAGGUGCGCGCCGGCCGCGG	chr16:89627670-89627912(+)$1	242	45	84	12.8147
GCAGUACAGCUGAUGGCGGAGGCCGAGAAGCGAGUCAAG	chr20:23401803-23402078(-)$1	275	66	105	12.5020
GGAAGAGGGUGGCAUUCCUGCCUUGCAGCCUUUUCUCCA	chr3:50388667-50388962(+)$1	295	78	117	13.3812
ACACCCAGAGCACUUCUGACCUGAAGCAGCUGCUUUGUU	chr2:75787662-75787912(-)$1	250	198	237	15.7947

#DB
))))).(((((.((((......))))..))))).(.(((	chr16:88722017-88722268(-)$1	1	75	114	13.4377
(((.((((....((((......))))....)))).)).(	chr5:176738413-176738692(-)$1	1	91	130	13.3915
((..((((((((((.(......).))).))....)))))	chr17:79864658-79864924(-)$1	1	18	57	13.3848
((((..((.(..((((......))))..).))..))))(	chr19:35500211-35500444(+)$1	1	9	48	15.6699
((((((((..((((((.......))).))))))))))))	chr14:24610404-24610672(-)$1	1	133	172	12.3862
(((((((..((.(((((.....))))).))...))))))	chr3:23959773-23960040(+)$1	1	37	76	13.0292
(((..(((.(((..(((......)))..))).)))..))	chr12:56488880-56489186(+)$1	1	34	73	16.1220
.((((.((((((.(((....))))))..))).)))).))	chr2:131100665-131100910(+)$1	1	9	48	11.4795
((((.((((((..(((......)))..))))))))))))	chr2:238483617-238483896(-)$1	1	66	105	13.1461
..((((((((..((((......))))..).))))))).(	chr11:64534876-64535140(-)$1	1	155	194	15.3702
))((((((..(((.(((......)))..)))....))))	chr8:42952651-42952907(+)$1	1	114	153	15.0425
((((..((...((((.......))))..)))))))))))	chr3:52029360-52029625(-)$1	1	161	200	13.2475
(((((((((...((((......))))..))).)))))))	chr4:152025170-152025447(+)$1	1	115	154	19.0091
(((((((.(.(..((.........))..)))))).))))	chr19:10464561-10464819(-)$1	1	84	123	11.7192
(((((((((...((((....)))).))))))))))))).	chr2:128180646-128180875(+)$1	1	156	195	14.6826
(((..(((((.(((((((...))))...))).)).))).	chr17:48560688-48560938(+)$1	1	26	65	13.2249
.(((((((....((((......))))))))).)).))..	chr12:124110874-124111188(-)$1	1	72	111	13.2489
....((((.....(((......)))..))))...)))))	chr2:241536130-241536412(+)$1	1	145	184	15.5053
))))))))))((..((((....))))..))..(((((((	chr12:53343328-53343591(-)$1	1	65	104	12.2290
.((((((((((.(((((....))))).)))))))))).)	chr11:18422452-18422700(+)$1	1	191	230	13.4912
(((((((...(((.(((......))).)))...))))))	chr11:75113273-75113547(+)$1	1	177	216	13.5812
((.((((....(((((......)))))...)))).))).	chr1:17928501-17928790(+)$1	1	163	202	15.1973
...(.(((((....((......))..))))).)...)))	chr12:56435847-56436120(+)$1	1	121	160	13.0631
..((((((((((.((((.....))))..)))))))))).	chr19:55899315-55899557(+)$1	1	178	217	13.7664
(((((.(((.(((...((......))..))))))...))	chr20:33734818-33735092(-)$1	1	172	211	12.5709
((.(((((..((.((((.....)))).))....))))).	chr19:46026850-46027088(+)$1	1	130	169	12.8165
(((..((((...((((.........)))).)))).))))	chr12:57486601-57486848(+)$1	1	181	220	11.6582
((...(((((((((((......)))))))))))...)))	chr9:116831861-116832142(-)$1	1	46	85	16.4930
..(((((((..((.(((......)))..)).))))))).	chr11:10819262-10819536(-)$1	1	17	56	14.7669
...(((((....((((......))))...)))))....)	chr2:207025953-207026183(+)$1	1	158	197	17.9944
(.(.((((....(((.(....).)))....)))).).).	chr22:32000830-32001070(+)$1	1	194	233	14.4334
((((((((((((((........))))..)))))))))))	chr16:1747676-1748005(+)$1	1	226	265	13.4538
(((..(....((((.((((...)))).))))....)..)	chr16:72144872-72145119(+)$1	1	70	109	11.8480
(.((((((((((.((((.....)))).)))))))))).)	chr14:74192592-74192847(-)$1	1	172	211	15.9222
(.((((((((((.(((......).)).)))))))))).)	chr3:48670993-48671238(-)$1	1	122	161	16.5053
.((((((.(...((((......))))...).))).))).	chr13:50571713-50571956(+)$1	1	150	189	18.6258
.(.(((((((..((((......)))))))))))...).)	chr16:67143848-67144153(+)$1	1	235	274	16.8588
(.(((..((((..((((....).)))..))))..))).)	chr19:56170610-56170815(+)$1	1	10	49	12.1084
((((((((...(((.(......))))...))))))))))	chr15:89164509-89164794(+)$1	1	168	207	19.8344
(((((.((....((((.....))))....)).)))).).	chr1:44445080-44445331(+)$1	1	79	118	13.6791
((((((((...(.(((.(....).))).)...)))))).	chrX:2747882-2748209(+)$1	1	166	205	12.5629
((((((((....((((......)))).))))))).))))	chr16:16253320-16253608(-)$1	1	188	227	17.9320
(((.(((((((.(((((...)))))....))))))).))	chr7:72992643-72992850(-)$1	1	7	46	12.7218
((((..(((..(((.........)))...))))))))))	chr6:31655948-31656212(-)$1	1	123	162	12.8089
..((((((...((.((......)).))...))))))..)	chr8:144679379-144679647(-)$1	1	108	147	12.9068
(((((.(((.(.((((.....))).).).))).))))))	chr1:1326167-1326411(-)$1	1	111	150	12.0037
(((..((((.((((.(......).))))..)))))))))	chr6:32138576-32138816(-)$1	1	71	110	12.9476
((((.((((....(((......)))....)))).)))))	chr19:14040351-14040641(+)$1	1	165	204	15.9279
(((...(((...(((.....))))))..)))))))))))	chr12:131356845-131357083(+)$1	1	144	183	13.5634
(.((((.((((.((((......))).).)))))))).))	chr16:89627670-89627912(+)$1	1	45	84	12.8147
((...((.(((..((((....))))...)))..))....	chr20:23401803-23402078(-)$1	1	66	105	12.5020
((((((((((.(((.........))).))))))).))))	chr3:50388667-50388962(+)$1	1	78	117	13.3812
.....(((((((((((......))))....)))))))))	chr2:75787662-75787912(-)$1	1	198	237	15.7947

#PSSM
g : 0.11	= : 0.11	e : 0.11	[ : 0.09	c : 0.07	d : 0.05	i : 0.05	f : 0.05	b : 0.05	a : 0.05	: : 0.03	h : 0.03	" : 0.03	I : 0.01	# : 0.01	+ : 0.01	! : 0.01	$ : 0.01	
g : 0.13	= : 0.11	e : 0.11	d : 0.09	[ : 0.09	b : 0.05	i : 0.05	f : 0.05	c : 0.05	: : 0.03	h : 0.03	" : 0.03	a : 0.03	# : 0.01	+ : 0.01	! : 0.01	$ : 0.01	
g : 0.16	= : 0.16	f : 0.11	d : 0.09	e : 0.09	" : 0.07	[ : 0.05	b : 0.03	i : 0.03	h : 0.03	c : 0.03	! : 0.01	# : 0.01	a : 0.01	$ : 0.01	
= : 0.16	g : 0.13	! : 0.11	d : 0.11	f : 0.09	e : 0.09	[ : 0.05	" : 0.05	i : 0.03	h : 0.03	c : 0.03	# : 0.01	a : 0.01	$ : 0.01	
= : 0.16	g : 0.15	d : 0.15	! : 0.15	e : 0.09	f : 0.07	[ : 0.05	" : 0.05	c : 0.03	i : 0.01	h : 0.01	$ : 0.01	
= : 0.18	d : 0.16	g : 0.15	e : 0.09	! : 0.07	[ : 0.07	f : 0.07	c : 0.05	: : 0.01	i : 0.01	h : 0.01	a : 0.01	" : 0.01	b : 0.01	
= : 0.18	c : 0.16	d : 0.15	g : 0.13	e : 0.11	b : 0.07	f : 0.07	i : 0.01	h : 0.01	# : 0.01	! : 0.01	[ : 0.01	
= : 0.16	d : 0.15	c : 0.15	g : 0.13	e : 0.11	f : 0.07	b : 0.05	[ : 0.05	# : 0.03	i : 0.01	! : 0.01	" : 0.01	
# : 0.15	= : 0.15	c : 0.13	g : 0.11	" : 0.09	d : 0.09	! : 0.07	e : 0.05	[ : 0.03	a : 0.03	f : 0.01	b : 0.01	$ : 0.01	
" : 0.18	# : 0.16	= : 0.13	! : 0.09	[ : 0.07	g : 0.07	b : 0.05	c : 0.05	e : 0.03	a : 0.03	d : 0.03	f : 0.01	$ : 0.01	
# : 0.16	" : 0.16	c : 0.13	! : 0.09	= : 0.09	d : 0.09	b : 0.07	a : 0.03	[ : 0.03	g : 0.03	e : 0.01	f : 0.01	$ : 0.01	
c : 0.20	# : 0.15	! : 0.13	[ : 0.11	" : 0.09	d : 0.07	b : 0.07	= : 0.07	$ : 0.01	e : 0.01	a : 0.01	g : 0.01	
d : 0.33	c : 0.20	! : 0.11	[ : 0.11	e : 0.07	# : 0.03	b : 0.03	a : 0.03	$ : 0.01	= : 0.01	
d : 0.41	c : 0.30	e : 0.07	[ : 0.07	! : 0.03	b : 0.03	# : 0.01	" : 0.01	= : 0.01	
d : 0.39	c : 0.28	[ : 0.07	e : 0.07	b : 0.07	r : 0.03	" : 0.01	= : 0.01	q : 0.01	
d : 0.39	c : 0.24	a : 0.07	e : 0.07	r : 0.05	b : 0.03	p : 0.01	" : 0.01	= : 0.01	[ : 0.01	q : 0.01	n : 0.01	
o : 0.43	d : 0.13	c : 0.07	r : 0.07	e : 0.05	n : 0.05	p : 0.03	m : 0.03	a : 0.03	b : 0.01	q : 0.01	[ : 0.01	
o : 0.50	n : 0.13	m : 0.11	r : 0.07	d : 0.05	p : 0.03	b : 0.01	q : 0.01	a : 0.01	l : 0.01	
o : 0.52	m : 0.15	n : 0.13	r : 0.07	p : 0.03	l : 0.03	q : 0.01	d : 0.01	
o : 0.52	m : 0.15	n : 0.13	r : 0.07	l : 0.05	p : 0.03	q : 0.01	
o : 0.52	n : 0.11	m : 0.11	r : 0.07	p : 0.03	c : 0.03	l : 0.03	d : 0.01	q : 0.01	e : 0.01	
o : 0.52	n : 0.07	r : 0.07	d : 0.07	c : 0.05	p : 0.03	m : 0.03	e : 0.03	a : 0.03	q : 0.01	l : 0.01	
d : 0.41	c : 0.13	a : 0.09	o : 0.09	e : 0.07	r : 0.07	b : 0.03	] : 0.03	p : 0.01	= : 0.01	
d : 0.41	c : 0.32	] : 0.07	e : 0.07	r : 0.03	b : 0.03	o : 0.01	= : 0.01	
d : 0.41	c : 0.33	e : 0.07	b : 0.05	] : 0.05	2 : 0.01	r : 0.01	= : 0.01	
d : 0.37	c : 0.26	b : 0.07	e : 0.05	2 : 0.05	4 : 0.05	= : 0.03	3 : 0.03	a : 0.01	] : 0.01	
2 : 0.33	] : 0.18	4 : 0.11	3 : 0.11	e : 0.07	c : 0.03	= : 0.03	d : 0.03	g : 0.01	b : 0.01	a : 0.01	
2 : 0.30	3 : 0.15	4 : 0.11	= : 0.09	] : 0.07	d : 0.07	g : 0.05	c : 0.03	e : 0.03	f : 0.01	b : 0.01	a : 0.01	
c : 0.16	= : 0.13	4 : 0.11	b : 0.11	3 : 0.11	d : 0.09	a : 0.07	g : 0.07	e : 0.05	f : 0.01	] : 0.01	2 : 0.01	
c : 0.20	= : 0.15	b : 0.11	d : 0.09	g : 0.09	e : 0.07	4 : 0.07	] : 0.05	3 : 0.05	a : 0.03	f : 0.01	2 : 0.01	
d : 0.20	c : 0.16	= : 0.15	g : 0.13	e : 0.07	3 : 0.05	4 : 0.03	b : 0.03	i : 0.03	f : 0.03	] : 0.03	: : 0.01	
d : 0.16	g : 0.15	= : 0.15	] : 0.13	4 : 0.07	3 : 0.07	c : 0.07	e : 0.03	i : 0.03	f : 0.03	b : 0.01	: : 0.01	2 : 0.01	
d : 0.18	g : 0.16	= : 0.16	4 : 0.07	2 : 0.05	3 : 0.05	c : 0.05	f : 0.05	e : 0.03	i : 0.03	b : 0.03	a : 0.01	h : 0.01	] : 0.01	
d : 0.16	= : 0.16	g : 0.15	f : 0.07	3 : 0.07	4 : 0.05	c : 0.05	b : 0.05	2 : 0.03	i : 0.03	h : 0.03	e : 0.03	: : 0.01	] : 0.01	
] : 0.18	= : 0.16	g : 0.11	e : 0.07	d : 0.07	f : 0.07	3 : 0.07	c : 0.05	4 : 0.05	i : 0.03	h : 0.03	a : 0.01	b : 0.01	
= : 0.15	c : 0.13	d : 0.11	f : 0.11	g : 0.11	e : 0.07	3 : 0.07	b : 0.03	i : 0.03	h : 0.03	4 : 0.03	a : 0.03	[ : 0.01	2 : 0.01	
c : 0.16	= : 0.15	e : 0.09	] : 0.09	f : 0.09	g : 0.09	d : 0.05	2 : 0.05	b : 0.03	i : 0.03	h : 0.03	4 : 0.03	3 : 0.01	a : 0.01	
e : 0.13	c : 0.13	= : 0.09	g : 0.09	f : 0.09	] : 0.09	d : 0.07	: : 0.05	i : 0.03	b : 0.03	h : 0.03	4 : 0.03	a : 0.03	2 : 0.03	
e : 0.15	] : 0.11	g : 0.09	f : 0.09	c : 0.09	= : 0.07	b : 0.07	d : 0.07	i : 0.03	2 : 0.03	: : 0.03	h : 0.03	4 : 0.03	J : 0.01	a : 0.01	

#score	751.8642915947092
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_UTR_m3_run1.txt

#BEAR
""bbuuuuuuuuuuuubb333b	chr11:2153223-2153432(-)$1	209	147	169	21.9175
ggggvvvvvvvvvvvvvggggg	chr16:279072-279345(-)$1	273	212	234	22.5792
iiiiuuuuuuuuuuuuiiiiii	chr11:61196943-61197331(-)$1	388	106	128	22.9150
!!bbuuuuuuuuuuuubb22gg	chr19:42751760-42752029(-)$1	269	145	167	21.8489
dd!!attttttttttta22ddd	chr1:155947809-155948063(-)$1	254	44	66	21.9204
dddduuuuuuuuuuuudddd::	chr11:2160142-2160351(-)$1	209	148	170	21.2950
eeeeuuuuuuuuuuuueeeeeF	chr1:249151725-249152030(-)$1	305	274	296	22.8116
dddyyyyyyyyyyyyyyyyddd	chr19:6663594-6663848(-)$1	254	122	144	19.6655
ffffftttttttttttffffff	chr21:46644063-46644318(+)$1	255	111	133	21.7472
dddduuuuuuuuuuuudddd:G	chr13:113977727-113978029(+)$1	302	264	286	21.5871
fff[attttttttttta]ffff	chr19:12832808-12833097(-)$1	289	222	244	22.5119
ddddtttttttttttdddd22g	chr1:36787651-36787893(+)$1	242	18	40	21.4031
[ddddtttttttttttdddd]b	chr1:205718995-205719268(-)$1	273	250	272	22.1699
[ccctttttttttttcccccc]	chr11:61196728-61197029(-)$1	301	190	212	22.2575
ddddvvvvvvvvvvvvvdddd]	chr12:72057379-72057646(-)$1	267	171	193	22.5880
$$ccctttttttttttccc666	chr17:80708899-80709144(+)$1	245	104	126	20.6765
eeeevvvvvvvvvvvvveeeee	chr13:113539347-113539694(+)$1	347	324	346	22.7432
a[ccctttttttttttccc]a2	chr3:42845672-42845971(-)$1	299	216	238	22.3163
eeeeuuuuuuuuuuuueeeee]	chr1:161087981-161088307(+)$1	326	282	304	23.3135
##bbwwwwwwwwwwwwwwbb22	chr17:1465763-1466012(-)$1	249	201	223	19.5316
[cccuuuuuuuuuuuuccc]cc	chr16:571312-571564(+)$1	252	134	156	23.0818
f!!avvvvvvvvvvvvva22ff	chr6:30709955-30710261(-)$1	306	196	218	21.9481
c[bbuuuuuuuuuuuubb]ccc	chr1:55352297-55352525(-)$1	228	139	161	22.0213
====uuuuuuuuuuuu======	chr11:2152302-2152529(-)$1	227	97	119	23.2156
iiiiitttttttttttiiiiii	chr9:110091968-110092213(+)$1	245	211	233	21.9602
dddduuuuuuuuuuuudddd::	chr11:2160075-2160280(-)$1	205	77	99	21.2950
fcccuuuuuuuuuuuuccc]ff	chr6:37142106-37142371(+)$1	265	154	176	22.9421
dddbbtttttttttttbb]ddd	chr6:16129266-16129553(+)$1	287	243	265	21.2944
eeeevvvvvvvvvvvvveeeee	chr11:2159445-2159658(-)$1	213	70	92	22.7432
!a[bbtttttttttttbb]a44	chr12:49351004-49351335(-)$1	331	95	117	21.6123
fffftttttttttttffffffc	chr19:974771-975035(+)$1	264	170	192	21.3148
dddduuuuuuuuuuuudddd22	chr19:39440213-39440592(-)$1	379	326	348	22.6072
eeeeettttttttttteeeee:	chr11:2152647-2152852(-)$1	205	92	114	21.8109
eeeevvvvvvvvvvvvveeeee	chr8:144678735-144679001(-)$1	266	83	105	22.7432
[cccvvvvvvvvvvvvvccc]=	chr2:97525523-97525785(-)$1	262	168	190	22.8260
eeeeettttttttttteeeeeb	chr11:2152426-2152629(-)$1	203	7	29	22.2820
dddduuuuuuuuuuuudddd]e	chr3:9957916-9958161(+)$1	245	34	56	22.8537
ffffuuuuuuuuuuuuffffff	chr20:43029832-43030078(+)$1	246	7	29	22.4287
$ddddtttttttttttdddd55	chr11:75161658-75161942(-)$1	284	137	159	20.6288
ffffftttttttttttffffff	chr1:54871611-54871884(-)$1	273	5	27	21.7472
ccc[attttttttttta]ccc]	chr17:56160730-56160982(+)$1	252	130	152	22.9166
eeeeettttttttttteeeee:	chr11:2152595-2152805(-)$1	210	45	67	21.8109
ffffuuuuuuuuuuuuffffff	chr21:46915387-46915642(+)$1	255	29	51	22.4287
eeeettttttttttteeeee44	chr11:2153963-2154178(-)$1	215	72	94	22.1138
fffftttttttttttffffff]	chr11:3013183-3013452(-)$1	269	194	216	21.5475
yyyyyyyyyyyyyyyybbgggg	chr9:97845831-97846143(+)$1	312	82	104	19.0656
ddddtttttttttttddddbb]	chrX:139014503-139014814(-)$1	311	176	198	21.3433
eeeevvvvvvvvvvvvveeeee	chr11:2159458-2159680(-)$1	222	92	114	22.7432
eeeeettttttttttteeeee:	chr11:2152627-2152838(-)$1	211	78	100	21.8109
eee[attttttttttta]eeee	chr7:139257475-139257743(-)$1	268	126	148	22.9396
hhhhhttttttttttthhhhhh	chr7:77166498-77166738(+)$1	240	159	181	19.8586
ffffuuuuuuuuuuuuffffff	chr14:54421094-54421332(-)$1	238	95	117	22.4287
eeeeuuuuuuuuuuuueeeee:	chr11:2153349-2153577(-)$1	228	128	150	22.4472
[bbwwwwwwwwwwwwwwbb]ff	chr19:56153310-56153567(+)$1	257	27	49	19.9768
[cccvvvvvvvvvvvvvccc]e	chrX:106045907-106046195(+)$1	288	33	55	22.7206
eeeevvvvvvvvvvvvveeeee	chr15:72521847-72522109(-)$1	262	193	215	22.7432
ggggwwwwwwwwwwwwwwgggg	chr19:56652945-56653254(+)$1	309	208	230	21.0050
ffffyyyyyyyyyyyyyyyyff	chr3:196074547-196074824(-)$1	277	218	240	19.6555
dddduuuuuuuuuuuudddd::	chr11:2160102-2160311(-)$1	209	108	130	21.2950
fffftttttttttttffffff]	chr19:36504885-36505229(-)$1	344	236	258	21.5475
dddduuuuuuuuuuuudddd::	chr11:2160157-2160363(-)$1	206	160	182	21.2950
eeeeettttttttttteeeee:	chr11:2152623-2152827(-)$1	204	67	89	21.8109
iiiiuuuuuuuuuuuuiiiiii	chr11:61197135-61197429(-)$1	294	204	226	22.9150
ddddtttttttttttdddd]a]	chr17:48784864-48785161(-)$1	297	101	123	21.9295
ffffwwwwwwwwwwwwwwffff	chr10:28822604-28822874(+)$1	270	245	267	20.6343
ddddvvvvvvvvvvvvvdddd]	chr1:155242930-155243315(-)$1	385	348	370	22.5880
====uuuuuuuuuuuu======	chr6:44123019-44123283(+)$1	264	200	222	23.2156
$cccuuuuuuuuuuuuccc444	chr17:4618927-4619231(+)$1	304	129	151	22.8334
iiiivvvvvvvvvvvvviiiii	chr2:159313497-159313742(+)$1	245	139	161	22.5895

#otherMatches

#Seq PSSM
cagcacacacacaaacgcacag	chr11:2153223-2153432(-)$1	209	147	169	21.9175
CCGGGCCUUUGUCUAAGCCGGU	chr16:279072-279345(-)$1	273	212	234	22.5792
UGUCGGGAGGGAGCGGGGCGGG	chr11:61196943-61197331(-)$1	388	106	128	22.9150
GCCCUGAAACCAAACUGGAAGC	chr19:42751760-42752029(-)$1	269	145	167	21.8489
gggacgggguggguggggacug	chr1:155947809-155948063(-)$1	254	44	66	21.9204
GCCUGUCCCCCUCCCGAGGCCC	chr11:2160142-2160351(-)$1	209	148	170	21.2950
CUCCAGGGUAAGAGGAGGAGAC	chr1:249151725-249152030(-)$1	305	274	296	22.8116
AUGCACAACCACACAAUCACAU	chr19:6663594-6663848(-)$1	254	122	144	19.6655
CUGGCUUUUCCCUUCUGUCAGG	chr21:46644063-46644318(+)$1	255	111	133	21.7472
auggaauacuaugcagccauaa	chr13:113977727-113978029(+)$1	302	264	286	21.5871
GGGGUGGGGGGAGGGGAGCUCG	chr19:12832808-12833097(-)$1	289	222	244	22.5119
CUCUUCAUCGACCCCAGAGAGG	chr1:36787651-36787893(+)$1	242	18	40	21.4031
GGGACAGAAGGCUAGAGUCCGC	chr1:205718995-205719268(-)$1	273	250	272	22.1699
AGGUUAGCAAUCAUUACCCUCU	chr11:61196728-61197029(-)$1	301	190	212	22.2575
CGUUAGGAAAGAAGGGAAACGA	chr12:72057379-72057646(-)$1	267	171	193	22.5880
cugucccccuucccccgacccc	chr17:80708899-80709144(+)$1	245	104	126	20.6765
acguacauucacuacaaacgug	chr13:113539347-113539694(+)$1	347	324	346	22.7432
UGGGCGGAUGAGAGGAGUCGGG	chr3:42845672-42845971(-)$1	299	216	238	22.3163
GGAAAACCAAGGAUAGUUCCCG	chr1:161087981-161088307(+)$1	326	282	304	23.3135
AAGCGGGGAGGAGGGAGGGUGG	chr17:1465763-1466012(-)$1	249	201	223	19.5316
CAGCUCUCCCUACGCUGCUCGG	chr16:571312-571564(+)$1	252	134	156	23.0818
UGACGGGAAAGGGAAAGGAUGG	chr6:30709955-30710261(-)$1	306	196	218	21.9481
GAACAGAACAGGCAAAGUGCCC	chr1:55352297-55352525(-)$1	228	139	161	22.0213
ACCCGUAGGGUGGGCGGGGUGU	chr11:2152302-2152529(-)$1	227	97	119	23.2156
GCAGGUCUUUAUUUCUUCUGUA	chr9:110091968-110092213(+)$1	245	211	233	21.9602
GCCUGUCCCCCUCCCGAGGCCC	chr11:2160075-2160280(-)$1	205	77	99	21.2950
GACUAGCACCAUUUUAAGUCCC	chr6:37142106-37142371(+)$1	265	154	176	22.9421
ACACCAAAGAGAAGGCGGCUGU	chr6:16129266-16129553(+)$1	287	243	265	21.2944
UCGCACAUUCGGCCCCCGCGAC	chr11:2159445-2159658(-)$1	213	70	92	22.7432
GUGCUAGGUGGAGGGAAGGAAG	chr12:49351004-49351335(-)$1	331	95	117	21.6123
CCGUGGAAAUGGGAGGCGGUUG	chr19:974771-975035(+)$1	264	170	192	21.3148
agcccaaggaguucaaggcugc	chr19:39440213-39440592(-)$1	379	326	348	22.6072
UCAUGCGCAGCACAUACAUGAA	chr11:2152647-2152852(-)$1	205	92	114	21.8109
CUUUAAGUGGAAGGAAGAAGGC	chr8:144678735-144679001(-)$1	266	83	105	22.7432
GGCCUGCUGUGGACAAUGGCAU	chr2:97525523-97525785(-)$1	262	168	190	22.8260
AUAUCUAAGCAACUACGAUAUC	chr11:2152426-2152629(-)$1	203	7	29	22.2820
CUCUGGACCUAGGAAAAGAGGC	chr3:9957916-9958161(+)$1	245	34	56	22.8537
CCUCCACCCCUUCACAGAGGCU	chr20:43029832-43030078(+)$1	246	7	29	22.4287
GGGCUGGGGGCCGAGGAGCCGA	chr11:75161658-75161942(-)$1	284	137	159	20.6288
GCUUUGACAGCUGGAAAGAGCG	chr1:54871611-54871884(-)$1	273	5	27	21.7472
CCGGCGAAACUCCAAGGGCGGA	chr17:56160730-56160982(+)$1	252	130	152	22.9166
UCAUGCGCAGCACAUACAUGAA	chr11:2152595-2152805(-)$1	210	45	67	21.8109
GGGGUCCUGCAGCUCCUCCCAG	chr21:46915387-46915642(+)$1	255	29	51	22.4287
UGGGGCUUCUCCUGACCCAGUC	chr11:2153963-2154178(-)$1	215	72	94	22.1138
ggagGCCCCUCCCAACUCCCGG	chr11:3013183-3013452(-)$1	269	194	216	21.5475
acacacaccacacacagcgcgu	chr9:97845831-97846143(+)$1	312	82	104	19.0656
CGGGGAAGAGCGCAUCCCGCGG	chrX:139014503-139014814(-)$1	311	176	198	21.3433
UCGCACAUUCGGCCCCCGCGAC	chr11:2159458-2159680(-)$1	222	92	114	22.7432
UCAUGCGCAGCACAUACAUGAA	chr11:2152627-2152838(-)$1	211	78	100	21.8109
gagagaaggagggaggCGCUCC	chr7:139257475-139257743(-)$1	268	126	148	22.9396
CCUGGAAGUUGUGGUGUCGGGA	chr7:77166498-77166738(+)$1	240	159	181	19.8586
GUUUAAAAAAUAAGGGAAGCCG	chr14:54421094-54421332(-)$1	238	95	117	22.4287
CAUGAAAACCAAAAUCCAUGCA	chr11:2153349-2153577(-)$1	228	128	150	22.4472
GCGGCAUGUAGUGGGGACGGAG	chr19:56153310-56153567(+)$1	257	27	49	19.9768
GGGGGAAGUGUGGAAAACCUGA	chrX:106045907-106046195(+)$1	288	33	55	22.7206
GUCUGAAGAUCAUUUAAAGACU	chr15:72521847-72522109(-)$1	262	193	215	22.7432
CUUCGGAAAGGUUUGCGGGAAG	chr19:56652945-56653254(+)$1	309	208	230	21.0050
AUUUUUUUAUAAAUACAUGUAA	chr3:196074547-196074824(-)$1	277	218	240	19.6555
GCCUGUCCCCCUCCCGAGGCCC	chr11:2160102-2160311(-)$1	209	108	130	21.2950
CGAGGAGGCUCAGAGCUUGGAG	chr19:36504885-36505229(-)$1	344	236	258	21.5475
GCCUGUCCCCCUCCCGAGGCCC	chr11:2160157-2160363(-)$1	206	160	182	21.2950
UCAUGCGCAGCACAUACAUGAA	chr11:2152623-2152827(-)$1	204	67	89	21.8109
UGUCGGGAGGGAGCGGGGCGGG	chr11:61197135-61197429(-)$1	294	204	226	22.9150
gggcggggcaggcgggccuggg	chr17:48784864-48785161(-)$1	297	101	123	21.9295
ggggccccgUUUUCUUCCUCCC	chr10:28822604-28822874(+)$1	270	245	267	20.6343
CGCGAAAAGAUGGCGACCGCGG	chr1:155242930-155243315(-)$1	385	348	370	22.5880
uuuuuuccuuuAAAAUAAAAAC	chr6:44123019-44123283(+)$1	264	200	222	23.2156
AGAGAUAAAGGAGCAGCUCAAA	chr17:4618927-4619231(+)$1	304	129	151	22.8334
ACUUUUUUAAUUUUUUCGGGUG	chr2:159313497-159313742(+)$1	245	139	161	22.5895

#DB
..((............))...)	chr11:2153223-2153432(-)$1	1	147	169	21.9175
((((.............)))))	chr16:279072-279345(-)$1	1	212	234	22.5792
((((............))))))	chr11:61196943-61197331(-)$1	1	106	128	22.9150
..((............))..))	chr19:42751760-42752029(-)$1	1	145	167	21.8489
((..(...........)..)))	chr1:155947809-155948063(-)$1	1	44	66	21.9204
((((............))))..	chr11:2160142-2160351(-)$1	1	148	170	21.2950
((((............))))))	chr1:249151725-249152030(-)$1	1	274	296	22.8116
(((................)))	chr19:6663594-6663848(-)$1	1	122	144	19.6655
(((((...........))))))	chr21:46644063-46644318(+)$1	1	111	133	21.7472
((((............)))).)	chr13:113977727-113978029(+)$1	1	264	286	21.5871
(((.(...........).))))	chr19:12832808-12833097(-)$1	1	222	244	22.5119
((((...........))))..)	chr1:36787651-36787893(+)$1	1	18	40	21.4031
.((((...........)))).)	chr1:205718995-205719268(-)$1	1	250	272	22.1699
.(((...........)))))).	chr11:61196728-61197029(-)$1	1	190	212	22.2575
((((.............)))).	chr12:72057379-72057646(-)$1	1	171	193	22.5880
..(((...........)))...	chr17:80708899-80709144(+)$1	1	104	126	20.6765
((((.............)))))	chr13:113539347-113539694(+)$1	1	324	346	22.7432
(.(((...........))).).	chr3:42845672-42845971(-)$1	1	216	238	22.3163
((((............))))).	chr1:161087981-161088307(+)$1	1	282	304	23.3135
..((..............))..	chr17:1465763-1466012(-)$1	1	201	223	19.5316
.(((............))).))	chr16:571312-571564(+)$1	1	134	156	23.0818
(..(.............)..))	chr6:30709955-30710261(-)$1	1	196	218	21.9481
(.((............)).)))	chr1:55352297-55352525(-)$1	1	139	161	22.0213
((((............))))))	chr11:2152302-2152529(-)$1	1	97	119	23.2156
(((((...........))))))	chr9:110091968-110092213(+)$1	1	211	233	21.9602
((((............))))..	chr11:2160075-2160280(-)$1	1	77	99	21.2950
((((............))).))	chr6:37142106-37142371(+)$1	1	154	176	22.9421
(((((...........)).)))	chr6:16129266-16129553(+)$1	1	243	265	21.2944
((((.............)))))	chr11:2159445-2159658(-)$1	1	70	92	22.7432
.(.((...........)).)..	chr12:49351004-49351335(-)$1	1	95	117	21.6123
((((...........)))))))	chr19:974771-975035(+)$1	1	170	192	21.3148
((((............))))..	chr19:39440213-39440592(-)$1	1	326	348	22.6072
(((((...........))))).	chr11:2152647-2152852(-)$1	1	92	114	21.8109
((((.............)))))	chr8:144678735-144679001(-)$1	1	83	105	22.7432
.(((.............))).)	chr2:97525523-97525785(-)$1	1	168	190	22.8260
(((((...........))))))	chr11:2152426-2152629(-)$1	1	7	29	22.2820
((((............)))).)	chr3:9957916-9958161(+)$1	1	34	56	22.8537
((((............))))))	chr20:43029832-43030078(+)$1	1	7	29	22.4287
.((((...........))))..	chr11:75161658-75161942(-)$1	1	137	159	20.6288
(((((...........))))))	chr1:54871611-54871884(-)$1	1	5	27	21.7472
(((.(...........).))).	chr17:56160730-56160982(+)$1	1	130	152	22.9166
(((((...........))))).	chr11:2152595-2152805(-)$1	1	45	67	21.8109
((((............))))))	chr21:46915387-46915642(+)$1	1	29	51	22.4287
((((...........)))))..	chr11:2153963-2154178(-)$1	1	72	94	22.1138
((((...........)))))).	chr11:3013183-3013452(-)$1	1	194	216	21.5475
................))))))	chr9:97845831-97846143(+)$1	1	82	104	19.0656
((((...........)))))).	chrX:139014503-139014814(-)$1	1	176	198	21.3433
((((.............)))))	chr11:2159458-2159680(-)$1	1	92	114	22.7432
(((((...........))))).	chr11:2152627-2152838(-)$1	1	78	100	21.8109
(((.(...........).))))	chr7:139257475-139257743(-)$1	1	126	148	22.9396
(((((...........))))))	chr7:77166498-77166738(+)$1	1	159	181	19.8586
((((............))))))	chr14:54421094-54421332(-)$1	1	95	117	22.4287
((((............))))).	chr11:2153349-2153577(-)$1	1	128	150	22.4472
.((..............)).))	chr19:56153310-56153567(+)$1	1	27	49	19.9768
.(((.............))).)	chrX:106045907-106046195(+)$1	1	33	55	22.7206
((((.............)))))	chr15:72521847-72522109(-)$1	1	193	215	22.7432
((((..............))))	chr19:56652945-56653254(+)$1	1	208	230	21.0050
((((................))	chr3:196074547-196074824(-)$1	1	218	240	19.6555
((((............))))..	chr11:2160102-2160311(-)$1	1	108	130	21.2950
((((...........)))))).	chr19:36504885-36505229(-)$1	1	236	258	21.5475
((((............))))..	chr11:2160157-2160363(-)$1	1	160	182	21.2950
(((((...........))))).	chr11:2152623-2152827(-)$1	1	67	89	21.8109
((((............))))))	chr11:61197135-61197429(-)$1	1	204	226	22.9150
((((...........)))).).	chr17:48784864-48785161(-)$1	1	101	123	21.9295
((((..............))))	chr10:28822604-28822874(+)$1	1	245	267	20.6343
((((.............)))).	chr1:155242930-155243315(-)$1	1	348	370	22.5880
((((............))))))	chr6:44123019-44123283(+)$1	1	200	222	23.2156
.(((............)))...	chr17:4618927-4619231(+)$1	1	129	151	22.8334
((((.............)))))	chr2:159313497-159313742(+)$1	1	139	161	22.5895

#PSSM
d : 0.21	e : 0.21	f : 0.18	[ : 0.08	i : 0.05	$ : 0.04	g : 0.02	! : 0.02	c : 0.02	= : 0.02	" : 0.01	a : 0.01	# : 0.01	y : 0.01	h : 0.01	
d : 0.24	e : 0.21	f : 0.15	c : 0.10	i : 0.05	g : 0.02	! : 0.02	[ : 0.02	= : 0.02	" : 0.01	$ : 0.01	# : 0.01	a : 0.01	y : 0.01	h : 0.01	b : 0.01	
d : 0.23	e : 0.21	f : 0.15	c : 0.13	b : 0.07	i : 0.05	g : 0.02	! : 0.02	= : 0.02	[ : 0.01	y : 0.01	h : 0.01	
d : 0.20	e : 0.20	f : 0.14	c : 0.11	b : 0.08	i : 0.05	[ : 0.04	g : 0.02	y : 0.02	= : 0.02	! : 0.01	a : 0.01	h : 0.01	w : 0.01	
u : 0.33	v : 0.17	t : 0.11	e : 0.07	a : 0.05	w : 0.05	y : 0.04	f : 0.02	d : 0.02	c : 0.02	b : 0.02	i : 0.01	h : 0.01	
t : 0.39	u : 0.33	v : 0.17	w : 0.05	y : 0.04	
t : 0.39	u : 0.33	v : 0.17	w : 0.05	y : 0.04	
t : 0.39	u : 0.33	v : 0.17	w : 0.05	y : 0.04	
t : 0.39	u : 0.33	v : 0.17	w : 0.05	y : 0.04	
t : 0.39	u : 0.33	v : 0.17	w : 0.05	y : 0.04	
t : 0.39	u : 0.33	v : 0.17	w : 0.05	y : 0.04	
t : 0.39	u : 0.33	v : 0.17	w : 0.05	y : 0.04	
t : 0.39	u : 0.33	v : 0.17	w : 0.05	y : 0.04	
t : 0.39	u : 0.33	v : 0.17	w : 0.05	y : 0.04	
t : 0.39	u : 0.33	v : 0.17	w : 0.05	y : 0.04	
u : 0.33	t : 0.27	v : 0.17	w : 0.05	y : 0.04	d : 0.04	f : 0.04	c : 0.01	e : 0.01	
v : 0.17	d : 0.17	e : 0.13	f : 0.11	b : 0.08	c : 0.08	a : 0.05	w : 0.05	i : 0.04	y : 0.02	= : 0.02	h : 0.01	
d : 0.20	e : 0.20	f : 0.11	c : 0.11	b : 0.10	i : 0.05	] : 0.04	w : 0.04	y : 0.02	= : 0.02	g : 0.01	2 : 0.01	a : 0.01	h : 0.01	
e : 0.21	d : 0.20	f : 0.14	c : 0.13	i : 0.05	g : 0.04	2 : 0.04	] : 0.04	y : 0.02	b : 0.02	= : 0.02	3 : 0.01	h : 0.01	
e : 0.21	d : 0.20	f : 0.14	c : 0.07	] : 0.07	i : 0.05	g : 0.04	2 : 0.04	b : 0.02	= : 0.02	3 : 0.01	6 : 0.01	a : 0.01	h : 0.01	y : 0.01	4 : 0.01	
e : 0.20	f : 0.20	d : 0.07	: : 0.07	g : 0.05	i : 0.05	] : 0.05	c : 0.05	2 : 0.04	4 : 0.04	a : 0.02	= : 0.02	3 : 0.01	6 : 0.01	5 : 0.01	b : 0.01	h : 0.01	
f : 0.15	: : 0.13	] : 0.13	e : 0.11	g : 0.07	i : 0.05	b : 0.04	d : 0.04	2 : 0.04	c : 0.04	= : 0.04	4 : 0.04	F : 0.01	G : 0.01	6 : 0.01	5 : 0.01	h : 0.01	

#score	1513.3675740506194
#seq	69
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_CDS_m2_run1.txt

#BEAR
ccc[dddd[a[bb!!bboooooobb]bb]addddccc	chr7:11022479-11022764(+)$1	285	243	280	15.7511
!eeeee[ccc[ccc[cccmmmmccc]ccc]ccc]eee	chr9:116984407-116984622(+)$1	215	124	161	11.9633
fffffeeeeedddd[bboooooobb]dddd]eeeee]	chr3:149688471-149688768(-)$1	297	135	172	16.3873
d[bb[eeeeedddd[bboooooobb]dddd]eeeee]	chr5:65440061-65440354(+)$1	293	211	248	15.8104
:dddd!!eeeee[a!!aooooooa22a]eeeee22dd	chr18:51795826-51796161(+)$1	335	121	158	13.9496
Feeeee[dddd[a[cccooooooccc]adddd]eeee	chr2:27258364-27258647(+)$1	283	117	154	15.2615
dcccccc####ccc[bboooooobb22ccc333ccc]	chr19:45855425-45855708(-)$1	283	189	226	16.9837
[eeeee####dddd[bboooooobb]dddd4444eee	chr14:24620331-24620598(+)$1	267	201	238	17.1584
FFF:eeeeeeeeee[bboooooobbeeeee22eeeee	chr15:76224948-76225260(+)$1	312	180	217	13.6744
"""eeeee"""dddd[bbnnnnnbb]dddd333eeee	chr6:36043512-36043788(+)$1	276	193	230	13.3603
dd!!eeeee[a[bb[bboooooobb]bb]aeeeee]d	chr6:43014583-43014869(-)$1	286	59	96	15.9453
##ccccccccc!!bbbboooooobb]bb22ccc]ccc	chr16:15092095-15092334(+)$1	239	143	180	15.3897
cc]bbffffff[bb[bboooooobb]bb333ffffff	chr9:72333178-72333511(-)$1	333	151	188	14.7249
###dddd[ccc"""cccooooooccc22cccdddd55	chr5:132158528-132158843(-)$1	315	255	292	13.1212
ffffffiiiiiiiiiooooooiiiiiiiii333ffff	chr9:100777545-100777803(+)$1	258	18	55	13.0175
cc:eeeee[eeeee[bboooooobb]eeeee22eeee	chr14:103571245-103571488(+)$1	243	185	222	15.1017
ffffccc!!eeeee[bbnnnnnbb]eeeee]ccc]ff	chr2:232576581-232576793(+)$1	212	94	131	12.3469
$dddd[ccc[ccc!!bboooooobb]ccc]ccc333d	chr2:128051117-128051357(-)$1	240	176	213	17.2404
!a[dddd[ccc####cccnnnnnccc4444ccc]ddd	chr3:48670813-48671050(-)$1	237	27	64	12.6760
ffffiiiiiiiii!!bboooooobbiiiiiiiii]ff	chr16:2059487-2059787(-)$1	300	93	130	17.6739
!!ffffff"""ddddbboooooobb]dddd4444fff	chr14:53417108-53417396(-)$1	288	239	276	16.2321
==================nnnnn===========333	chr21:47626516-47626761(-)$1	245	17	54	14.3492
d:dddd!!ffffff[bboooooobb22ffffff22dd	chr21:47556778-47557001(-)$1	223	61	98	13.2521
[=========="""bb[bbmmmmbb]bb333======	chr16:87799269-87799527(-)$1	258	180	217	12.5923
eee:iiiiiiiii[a[bbnnnnnbb]a]iiiiiiiii	chr17:20769755-20770030(-)$1	275	186	223	13.0144
FFFF===========[ccclllccc]===========	chr9:117004367-117004592(+)$1	225	141	178	11.9667
gggg!!dddd[ccc[bboooooobb]cccdddd333g	chr17:74309778-74310047(-)$1	269	16	53	17.1746
GGGccc!!dddd[ddddoooooodddd]dddd22ccc	chr10:105614844-105615117(-)$1	273	45	82	12.1057
ddd####dddd[a!!bbnnnnnbb22a]dddd]dddd	chr17:2278700-2278953(+)$1	253	131	168	12.1123
c[eeeee[a!!ccc[bboooooobb]ccc22a]eeee	chr22:43278111-43278394(-)$1	283	218	255	17.6066
eeeeeeee!!bb[ddddoooooodddd22bb22eeee	chr13:113510185-113510505(+)$1	320	50	87	12.6883
:dddd[dddd[bb[cccooooooccc333bbdddd]d	chr13:76408352-76408653(+)$1	301	107	144	13.2076
::===========!!aooooooa333===========	chr3:186504885-186505145(+)$1	260	7	44	14.8589
ffffff[bb[ccc!!bboooooobb22cccbbfffff	chr9:116999160-116999371(+)$1	211	134	171	15.7048
eeeee[hhhhhhhh[bboooooobbhhhhhhhh333e	chr3:9730534-9730856(+)$1	322	145	182	13.8647
ffffff[dddd"""ddddnnnnndddd333dddd]ff	chr22:50874760-50875023(+)$1	263	207	244	11.5605
bb[ccc[dddd[ccc[aooooooa]cccdddd]cccb	chr9:117044736-117044944(+)$1	208	11	48	14.1742
bb!!eeeee"""ccc[aooooooa]ccc333eeeee2	chr16:4910901-4911235(+)$1	334	167	204	15.3492
ffffff[==========oooooo==========]fff	chr16:16259421-16259718(-)$1	297	166	203	16.5336
==========####cccooooooccc22=========	chr11:67810937-67811152(+)$1	215	60	97	16.8270
:ccc[ccc!!ccc[cccoooooocccccc22ccc]cc	chr16:28962379-28962640(+)$1	261	101	138	14.5315
"eeeee!!dddd"""bbnnnnnbb333dddd4444ee	chr6:31600213-31600466(+)$1	253	26	63	14.4019
fffff####eeeee[bboooooobb]eeeee]fffff	chr9:97842935-97843196(+)$1	261	205	242	15.8852
""==========####ddddllldddd==========	chr22:51020589-51020840(-)$1	251	48	85	12.1002
###ccc[eeeee!!cccooooooccc]eeeee]ccc3	chr19:12817012-12817284(-)$1	272	42	79	15.1911
ffffffdddd[a!!cccnnnnnccc333a]dddd]ff	chr17:2240786-2241129(+)$1	343	104	141	12.7322
eeeeggggggg[ccc[aooooooa]ccc4444ggggg	chr19:18962850-18963134(+)$1	284	28	65	15.6562
eeee[eeeee[bb!!cccnnnnnccc]bb333eeeee	chr6:131277350-131277645(-)$1	295	39	76	12.6743
fffff!!eeeee"""bboooooobb22eeeee4444f	chr17:78931339-78931624(+)$1	285	237	274	17.1750
===========bb[ddddnnnnndddd]bb]======	chr21:47626485-47626716(-)$1	231	95	132	11.4756
fff[a[ccc!!ccc[bbnnnnnbbccc]cccafffff	chr20:2637625-2637846(+)$1	221	44	81	13.1901
[dddd[eeeee"""cccooooooccc333eeeee22d	chr9:116997826-116998032(+)$1	206	21	58	15.4415
[eeeee####dddd!!aooooooa]dddd22eeeee]	chr12:19592864-19593142(+)$1	278	238	275	15.0479
dddda[dddd$$$$$bboooooobb4444dddd]a88	chr16:28855258-28855501(-)$1	243	55	92	14.5636
ggggggg!!ffffff[aooooooa]ffffffgggggg	chr16:89598352-89598575(+)$1	223	137	174	13.4569

#otherMatches

#Seq PSSM
CAGUGCUGAUGAUGAGGAACUGACCAAUGAUAGCCUG	chr7:11022479-11022764(+)$1	285	243	280	15.7511
AGUCCCCGGCCUCAUUGUAAGUACAUUGAUGCCUGGG	chr9:116984407-116984622(+)$1	215	124	161	11.9633
GGCAGAGCUACGUGGAUAACCUGAUGUGCGAUGGCUG	chr3:149688471-149688768(-)$1	297	135	172	16.3873
GACGAAUCUGUCGUCGGCGGUGACCAGCGAGCAGAUG	chr5:65440061-65440354(+)$1	293	211	248	15.8104
AAGGCGGCGGCGACGACGACGAGGAAGACGCCGAGGC	chr18:51795826-51796161(+)$1	335	121	158	13.9496
AGCCGGGAGCUACGUGGGAUCAUCCGAGGGCUGCUGG	chr2:27258364-27258647(+)$1	283	117	154	15.2615
GUGUCCAGGUGGCCAAGUACUUCCUGCGGCAGAUGGC	chr19:45855425-45855708(-)$1	283	189	226	16.9837
GUCAUGGCAACCUUGAUGAAGCUGUGGAGGAGUGUGU	chr14:24620331-24620598(+)$1	267	201	238	17.1584
AAGACUGCUGAGGCUGCGAUGCAGCGCCUCAAAGCGG	chr15:76224948-76225260(+)$1	312	180	217	13.6744
AUCAUGCUGAACUGGAUGCAUUACAACCAGACAGGUA	chr6:36043512-36043788(+)$1	276	193	230	13.3603
GACCUCAGUGAGCAGGGACUAUGCCGUGGUGCUGAAU	chr6:43014583-43014869(-)$1	286	59	96	15.9453
UAUUCCAGGCCCACUCCAGGGCAGGUAGGUGGCACUG	chr16:15092095-15092334(+)$1	239	143	180	15.3897
GGAGCACAGGUUCAUUGAUCAAGUAUUGUCCACCUGU	chr9:72333178-72333511(-)$1	333	151	188	14.7249
UCAGGGACGACCUUGGCCAUCAUGCCCCGUCUCCCAG	chr5:132158528-132158843(-)$1	315	255	292	13.1212
UUUGUUGUUGUUGCCUCCAUUGGCAAUAAUCUAAGCA	chr9:100777545-100777803(+)$1	258	18	55	13.0175
GCGGGCGCAGCGUGGCCAGCAGGGGGCGCGCGAGCGC	chr14:103571245-103571488(+)$1	243	185	222	15.1017
aggaagaagaagGUGAUGGUGAGUAGCCUUGUCUAUC	chr2:232576581-232576793(+)$1	212	94	131	12.3469
GAGUCAGGCACCAAAGUGGAUGAAUAUGGAGCCAAGG	chr2:128051117-128051357(-)$1	240	176	213	17.2404
CCUGCGGAGGCGAGACUACCACAUGGAACGGCCGCUG	chr3:48670813-48671050(-)$1	237	27	64	12.6760
GGCGGCAGCUCCUGAGCGGGAAGGCGGGAGCUGCGUG	chr16:2059487-2059787(-)$1	300	93	130	17.6739
GUGAUGCUUAAGCUGGUGGAGAAACUCGGUGAGUAGC	chr14:53417108-53417396(-)$1	288	239	276	16.2321
CCCUGGGCGCCUGUGUGUGCUCAGCACAUGGGCGAGU	chr21:47626516-47626761(-)$1	245	17	54	14.3492
UGCACUGGUGCUGGACUGCUUGGAGACCCGGCAGGAG	chr21:47556778-47557001(-)$1	223	61	98	13.2521
UCGGCCGACUCCCUGCGCCCCCCGGGGUUACGGGUCG	chr16:87799269-87799527(-)$1	258	180	217	12.5923
GUGGGCUGGUACGUUGAGGGUGACUGGUUGUAUUGGC	chr17:20769755-20770030(-)$1	275	186	223	13.0144
GAGGUGAGUGUCACUGGCCUGGGGUAGGUGGCAUUCA	chr9:117004367-117004592(+)$1	225	141	178	11.9667
UACAUUUCUCUAGUGAUACAUGAAUGACUGAGAUCUU	chr17:74309778-74310047(-)$1	269	16	53	17.1746
GAUGAGAAGGUGACGCCGCCGGGGGCGCCACUCGCUU	chr10:105614844-105615117(-)$1	273	45	82	12.1057
CUGAAGAUUCCAGACCAAAACCUGAGCAGGAAGCAGG	chr17:2278700-2278953(+)$1	253	131	168	12.1123
GUGCCCAUGAGCUCAUCAGCCUGGAAGAGGACCUGGG	chr22:43278111-43278394(-)$1	283	218	255	17.6066
AUAUGCAGGACUACGGUUUAAUUAUCGACGGAGCUGC	chr13:113510185-113510505(+)$1	320	50	87	12.6883
GCCAUGGCUAAGGCUCAAGAAACUGGACACCUAGUGA	chr13:76408352-76408653(+)$1	301	107	144	13.2076
ACUUUAACUUCUAAACAUUACAGGAAUGGAAGUUGGA	chr3:186504885-186505145(+)$1	260	7	44	14.8589
GGGGGAAGCCAGGGCCUCUGGUAAGUACCUGCUCCUC	chr9:116999160-116999371(+)$1	211	134	171	15.7048
CAUGGAGAGUUCCCCAGGAGCCACUGGGAGCUUCACC	chr3:9730534-9730856(+)$1	322	145	182	13.8647
CAAGGGAGGCACAAGGGCCGCACGCCUGCCUGCUCCU	chr22:50874760-50875023(+)$1	263	207	244	11.5605
CUAUCAAGGACAGCUGGGUGAGAUGGGCGUCCCUGGA	chr9:117044736-117044944(+)$1	208	11	48	14.1742
CACCCCUGGAGAAGCGCGUUAAGGAGCUGGCUCAGGU	chr16:4910901-4911235(+)$1	334	167	204	15.3492
GGUGGUGGCAGUGGCUACCCCACUGGCCACUGUGGCC	chr16:16259421-16259718(-)$1	297	166	203	16.5336
GCAGAGCGGGACCCCAGAGUCAGCUGAGCCUGCUCUG	chr11:67810937-67811152(+)$1	215	60	97	16.8270
UGGUCACCGACAGCGAUGAGGAAAUUCUGGAGGUCGC	chr16:28962379-28962640(+)$1	261	101	138	14.5315
CGGGAGAAUGCCGCAAGGGGGUCUGAGGGCAAGCCCU	chr6:31600213-31600466(+)$1	253	26	63	14.4019
UCUCUUUCAUAACAAAUAAUUAAAUCUGUUACAGAGA	chr9:97842935-97843196(+)$1	261	205	242	15.8852
CUGCAGCGGAGGCCUCAGCAACCUGCUCUUCCGCUGC	chr22:51020589-51020840(-)$1	251	48	85	12.1002
CAUGGCCCAGUGUCACCUGCCAUGGUCCACUGAGCCC	chr19:12817012-12817284(-)$1	272	42	79	15.1911
CGCCUUGCGCGUGGGGCGCUGAGCCGAGAGGCGCGGA	chr17:2240786-2241129(+)$1	343	104	141	12.7322
CGCCCUCGUUCAUUUGCAUGUAGGGAAAAACAGGACG	chr19:18962850-18963134(+)$1	284	28	65	15.6562
CUGUGUCUGAAGUGAAGAAGGACUCUAGCCAGUUAGG	chr6:131277350-131277645(-)$1	295	39	76	12.6743
GUGCAGGGCUGGUCCUCGUCACAGAACCCAGCAAAGU	chr17:78931339-78931624(+)$1	285	237	274	17.1750
ACUUGCUGGAGCUGCUGAACCCCUCGGAGGUCUUCGG	chr21:47626485-47626716(-)$1	231	95	132	11.4756
AGGAGUCCUCAGAGCACCAGAAGUCUUCAGGCCCUUU	chr20:2637625-2637846(+)$1	221	44	81	13.1901
AUUGUAACCUUCUUUGCUGGUGUGUACUUAGGGUGAA	chr9:116997826-116998032(+)$1	206	21	58	15.4415
gccuggaggagcccaagggaccgcggggcagccaggg	chr12:19592864-19593142(+)$1	278	238	275	15.0479
GCUCCUUUUCCCUUUCCGUCCUAGGCAUUGAGAUGUU	chr16:28855258-28855501(-)$1	243	55	92	14.5636
GGGGGCUGUGGGUGGGCUUGGCUGACUACCUGGCUCC	chr16:89598352-89598575(+)$1	223	137	174	13.4569

#DB
(((.((((.(.((..((......)).)).))))))))	chr7:11022479-11022764(+)$1	1	243	280	15.7511
.(((((.(((.(((.(((....))).))).))).)))	chr9:116984407-116984622(+)$1	1	124	161	11.9633
((((((((((((((.((......)).)))).))))).	chr3:149688471-149688768(-)$1	1	135	172	16.3873
(.((.(((((((((.((......)).)))).))))).	chr5:65440061-65440354(+)$1	1	211	248	15.8104
.((((..(((((.(..(......)..).)))))..))	chr18:51795826-51796161(+)$1	1	121	158	13.9496
((((((.((((.(.(((......))).))))).))))	chr2:27258364-27258647(+)$1	1	117	154	15.2615
(((((((....(((.((......))..)))...))).	chr19:45855425-45855708(-)$1	1	189	226	16.9837
.(((((....((((.((......)).))))....)))	chr14:24620331-24620598(+)$1	1	201	238	17.1584
))).((((((((((.((......)))))))..)))))	chr15:76224948-76225260(+)$1	1	180	217	13.6744
...(((((...((((.((.....)).))))...))))	chr6:36043512-36043788(+)$1	1	193	230	13.3603
((..(((((.(.((.((......)).)).)))))).)	chr6:43014583-43014869(-)$1	1	59	96	15.9453
..(((((((((..((((......)).))..))).)))	chr16:15092095-15092334(+)$1	1	143	180	15.3897
)).))((((((.((.((......)).))...))))))	chr9:72333178-72333511(-)$1	1	151	188	14.7249
...((((.(((...(((......)))..)))))))..	chr5:132158528-132158843(-)$1	1	255	292	13.1212
(((((((((((((((......)))))))))...))))	chr9:100777545-100777803(+)$1	1	18	55	13.0175
)).(((((.(((((.((......)).)))))..))))	chr14:103571245-103571488(+)$1	1	185	222	15.1017
(((((((..(((((.((.....)).))))).))).))	chr2:232576581-232576793(+)$1	1	94	131	12.3469
.((((.(((.(((..((......)).))).)))...)	chr2:128051117-128051357(-)$1	1	176	213	17.2404
.(.((((.(((....(((.....)))....))).)))	chr3:48670813-48671050(-)$1	1	27	64	12.6760
(((((((((((((..((......))))))))))).))	chr16:2059487-2059787(-)$1	1	93	130	17.6739
..((((((...((((((......)).))))....)))	chr14:53417108-53417396(-)$1	1	239	276	16.2321
((((((((((((((((((.....)))))))))))...	chr21:47626516-47626761(-)$1	1	17	54	14.3492
).((((..((((((.((......))..))))))..))	chr21:47556778-47557001(-)$1	1	61	98	13.2521
.((((((((((...((.((....)).))...))))))	chr16:87799269-87799527(-)$1	1	180	217	12.5923
))).(((((((((.(.((.....)).).)))))))))	chr17:20769755-20770030(-)$1	1	186	223	13.0144
))))(((((((((((.(((...))).)))))))))))	chr9:117004367-117004592(+)$1	1	141	178	11.9667
((((..((((.(((.((......)).)))))))...)	chr17:74309778-74310047(-)$1	1	16	53	17.1746
((((((..((((.((((......)))).))))..)))	chr10:105614844-105615117(-)$1	1	45	82	12.1057
(((....((((.(..((.....))..).)))).))))	chr17:2278700-2278953(+)$1	1	131	168	12.1123
(.(((((.(..(((.((......)).)))..).))))	chr22:43278111-43278394(-)$1	1	218	255	17.6066
((((((((..((.((((......))))..))..))))	chr13:113510185-113510505(+)$1	1	50	87	12.6883
.((((.((((.((.(((......)))...)))))).)	chr13:76408352-76408653(+)$1	1	107	144	13.2076
..(((((((((((..(......)...)))))))))))	chr3:186504885-186505145(+)$1	1	7	44	14.8589
((((((.((.(((..((......))..))))))))))	chr9:116999160-116999371(+)$1	1	134	171	15.7048
(((((.((((((((.((......))))))))))...)	chr3:9730534-9730856(+)$1	1	145	182	13.8647
((((((.((((...((((.....))))...)))).))	chr22:50874760-50875023(+)$1	1	207	244	11.5605
((.(((.((((.(((.(......).))))))).))))	chr9:117044736-117044944(+)$1	1	11	48	14.1742
((..(((((...(((.(......).)))...))))).	chr16:4910901-4911235(+)$1	1	167	204	15.3492
((((((.((((((((((......)))))))))).)))	chr16:16259421-16259718(-)$1	1	166	203	16.5336
((((((((((....(((......)))..)))))))))	chr11:67810937-67811152(+)$1	1	60	97	16.8270
.(((.(((..(((.(((......))))))..))).))	chr16:28962379-28962640(+)$1	1	101	138	14.5315
.(((((..((((...((.....))...))))....))	chr6:31600213-31600466(+)$1	1	26	63	14.4019
(((((....(((((.((......)).))))).)))))	chr9:97842935-97843196(+)$1	1	205	242	15.8852
..((((((((((....((((...))))))))))))))	chr22:51020589-51020840(-)$1	1	48	85	12.1002
...(((.(((((..(((......))).))))).))).	chr19:12817012-12817284(-)$1	1	42	79	15.1911
((((((((((.(..(((.....)))...).)))).))	chr17:2240786-2241129(+)$1	1	104	141	12.7322
(((((((((((.(((.(......).)))....)))))	chr19:18962850-18963134(+)$1	1	28	65	15.6562
((((.(((((.((..(((.....))).))...)))))	chr6:131277350-131277645(-)$1	1	39	76	12.6743
(((((..(((((...((......))..)))))....)	chr17:78931339-78931624(+)$1	1	237	274	17.1750
(((((((((((((.((((.....)))).)).))))))	chr21:47626485-47626716(-)$1	1	95	132	11.4756
(((.(.(((..(((.((.....))))).)))))))))	chr20:2637625-2637846(+)$1	1	44	81	13.1901
.((((.(((((...(((......)))...)))))..)	chr9:116997826-116998032(+)$1	1	21	58	15.4415
.(((((....((((..(......).))))..))))).	chr12:19592864-19593142(+)$1	1	238	275	15.0479
(((((.((((.....((......))....)))).)..	chr16:28855258-28855501(-)$1	1	55	92	14.5636
(((((((..((((((.(......).))))))))))))	chr16:89598352-89598575(+)$1	1	137	174	13.4569

#PSSM
f : 0.20	d : 0.10	e : 0.09	c : 0.07	: : 0.07	[ : 0.07	! : 0.05	F : 0.05	" : 0.05	# : 0.05	= : 0.05	g : 0.03	b : 0.03	$ : 0.01	G : 0.01	
f : 0.20	e : 0.18	d : 0.12	c : 0.09	= : 0.07	# : 0.05	[ : 0.03	F : 0.03	" : 0.03	: : 0.03	g : 0.03	b : 0.03	a : 0.01	! : 0.01	G : 0.01	
f : 0.21	e : 0.20	d : 0.12	= : 0.10	c : 0.07	F : 0.03	! : 0.03	# : 0.03	[ : 0.03	g : 0.03	b : 0.01	" : 0.01	] : 0.01	: : 0.01	G : 0.01	
e : 0.21	f : 0.20	d : 0.14	c : 0.10	= : 0.10	[ : 0.03	b : 0.03	: : 0.03	! : 0.03	g : 0.03	F : 0.01	# : 0.01	
e : 0.23	f : 0.16	d : 0.14	= : 0.12	c : 0.10	[ : 0.05	i : 0.03	g : 0.03	a : 0.03	b : 0.01	! : 0.01	# : 0.01	
e : 0.27	c : 0.12	f : 0.12	= : 0.12	[ : 0.10	d : 0.07	! : 0.05	i : 0.03	# : 0.03	g : 0.03	
e : 0.20	d : 0.12	[ : 0.12	= : 0.12	c : 0.10	! : 0.09	# : 0.07	i : 0.05	f : 0.03	g : 0.03	h : 0.01	
e : 0.23	d : 0.16	= : 0.14	c : 0.09	! : 0.09	# : 0.07	[ : 0.05	i : 0.05	f : 0.03	b : 0.01	h : 0.01	g : 0.01	
e : 0.18	d : 0.18	= : 0.14	c : 0.10	# : 0.07	! : 0.07	i : 0.05	[ : 0.03	" : 0.03	f : 0.03	a : 0.01	b : 0.01	h : 0.01	g : 0.01	
e : 0.20	d : 0.18	= : 0.14	c : 0.07	! : 0.07	# : 0.05	" : 0.05	[ : 0.05	f : 0.05	i : 0.05	a : 0.01	h : 0.01	g : 0.01	
d : 0.18	e : 0.14	= : 0.12	[ : 0.10	c : 0.10	" : 0.05	f : 0.05	i : 0.05	# : 0.03	! : 0.03	a : 0.01	b : 0.01	h : 0.01	g : 0.01	$ : 0.01	
c : 0.14	d : 0.14	e : 0.12	[ : 0.10	b : 0.09	" : 0.09	= : 0.09	i : 0.05	# : 0.03	f : 0.03	! : 0.01	h : 0.01	a : 0.01	$ : 0.01	
c : 0.20	b : 0.10	d : 0.10	" : 0.10	e : 0.07	= : 0.07	[ : 0.05	! : 0.05	i : 0.05	# : 0.05	a : 0.03	f : 0.03	h : 0.01	$ : 0.01	
! : 0.16	c : 0.14	d : 0.14	" : 0.10	[ : 0.09	e : 0.07	b : 0.05	# : 0.05	= : 0.05	f : 0.03	a : 0.01	i : 0.01	h : 0.01	$ : 0.01	
[ : 0.29	c : 0.20	! : 0.16	d : 0.10	= : 0.05	b : 0.03	# : 0.03	" : 0.03	i : 0.01	a : 0.01	$ : 0.01	f : 0.01	
b : 0.47	c : 0.20	[ : 0.12	d : 0.07	! : 0.03	= : 0.03	o : 0.01	a : 0.01	# : 0.01	
b : 0.49	c : 0.21	a : 0.10	d : 0.09	o : 0.03	= : 0.03	[ : 0.01	
o : 0.70	n : 0.09	c : 0.07	b : 0.05	d : 0.05	= : 0.01	
o : 0.70	n : 0.21	m : 0.01	b : 0.01	c : 0.01	d : 0.01	
o : 0.70	n : 0.21	m : 0.03	l : 0.01	d : 0.01	
o : 0.70	n : 0.21	m : 0.03	l : 0.03	
o : 0.69	n : 0.21	m : 0.03	l : 0.03	i : 0.01	
o : 0.67	n : 0.12	b : 0.07	c : 0.05	i : 0.01	m : 0.01	a : 0.01	l : 0.01	
b : 0.50	c : 0.21	a : 0.10	d : 0.09	= : 0.03	i : 0.01	3 : 0.01	
b : 0.43	c : 0.23	] : 0.10	d : 0.09	2 : 0.03	= : 0.03	3 : 0.03	i : 0.01	
] : 0.32	c : 0.23	2 : 0.10	d : 0.10	3 : 0.05	e : 0.03	i : 0.03	= : 0.03	h : 0.01	4 : 0.01	f : 0.01	
d : 0.20	c : 0.16	2 : 0.10	b : 0.09	e : 0.07	= : 0.07	3 : 0.07	a : 0.05	] : 0.05	i : 0.03	4 : 0.03	h : 0.01	f : 0.01	
c : 0.18	d : 0.12	b : 0.10	] : 0.10	e : 0.10	= : 0.09	3 : 0.07	2 : 0.05	i : 0.03	4 : 0.03	f : 0.03	a : 0.01	h : 0.01	
d : 0.20	c : 0.16	e : 0.12	3 : 0.10	= : 0.10	i : 0.05	4 : 0.05	] : 0.03	2 : 0.03	f : 0.03	b : 0.03	h : 0.01	a : 0.01	
d : 0.21	e : 0.14	= : 0.10	3 : 0.09	c : 0.07	2 : 0.07	] : 0.05	i : 0.05	b : 0.05	a : 0.03	4 : 0.03	f : 0.03	h : 0.01	
d : 0.18	e : 0.12	3 : 0.12	c : 0.10	= : 0.10	] : 0.07	2 : 0.07	4 : 0.05	b : 0.05	i : 0.03	f : 0.03	h : 0.01	
d : 0.20	e : 0.16	= : 0.14	c : 0.10	3 : 0.07	4 : 0.07	2 : 0.05	f : 0.03	i : 0.03	a : 0.03	b : 0.01	h : 0.01	] : 0.01	g : 0.01	
e : 0.16	= : 0.14	d : 0.12	c : 0.10	] : 0.09	f : 0.09	4 : 0.07	3 : 0.05	2 : 0.05	i : 0.03	g : 0.03	h : 0.01	
e : 0.23	= : 0.12	d : 0.10	] : 0.09	c : 0.09	f : 0.09	4 : 0.07	2 : 0.05	3 : 0.05	i : 0.03	g : 0.03	
e : 0.25	f : 0.12	c : 0.10	= : 0.10	] : 0.09	d : 0.07	3 : 0.07	2 : 0.05	4 : 0.03	g : 0.03	i : 0.01	a : 0.01	
e : 0.25	f : 0.20	c : 0.12	= : 0.10	d : 0.07	3 : 0.07	] : 0.03	g : 0.03	5 : 0.01	i : 0.01	4 : 0.01	2 : 0.01	8 : 0.01	
f : 0.21	e : 0.20	d : 0.14	= : 0.10	c : 0.07	] : 0.07	g : 0.05	3 : 0.03	5 : 0.01	i : 0.01	b : 0.01	2 : 0.01	8 : 0.01	

#score	796.2384408008621
#seq	55
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_UTR_m1_run2.txt

#BEAR
ggggggg^^^^^^^^^^^^^^^^^^^^^^^	chr5:75911360-75911666(+)$1	306	218	248	28.8248
ccc[dddd^^^^^^^^^^^^^^^^^^^^^^	chr5:79946586-79946801(-)$1	215	110	140	28.5395
eeeee^^^^^^^^^^^^^^^^^^^^eeeee	chr11:2150286-2150494(-)$1	208	33	63	26.5104
d!!ddddaxxxxxxxxxxxxxxxa]dddd2	chrX:131506929-131507191(-)$1	262	112	142	22.5991
c!!eeeeevvvvvvvvvvvvveeeee]ccc	chr12:109530883-109531182(-)$1	299	3	33	19.1616
ccc[dddd^^^^^^^^^^^^^^^^^^dddd	chr3:193386369-193386688(+)$1	319	146	176	27.1512
c!!ggggggguuuuuuuuuuuuggggggg2	chr12:122973909-122974183(-)$1	274	118	148	18.6050
b[cccccc^^^^^^^^^^^^^^^^^^^^^^	chr12:32520433-32520718(+)$1	285	105	135	28.1358
[gggggggwwwwwwwwwwwwwwgggggggd	chr11:118319185-118319449(+)$1	264	79	109	20.6616
[gggggggyyyyyyyyyyyyyyyygggggg	chr11:96075306-96075569(-)$1	263	59	89	25.2493
ccceeeee^^^^^^^^^^^^^^^^^^^^^e	chr14:59950261-59950568(-)$1	307	77	107	28.3525
:::ddddyyyyyyyyyyyyyyyyddddfff	chr2:85547933-85548173(-)$1	240	95	125	20.6925
========xxxxxxxxxxxxxxx=======	chr7:86792336-86792594(+)$1	258	41	71	23.1930
ggggggg^^^^^^^^^^^^^^^^^^^^^^g	chr1:162340005-162340306(+)$1	301	258	288	28.7209
ccc[eeeeeuuuuuuuuuuuueeeee22cc	chr17:29701694-29701972(+)$1	278	246	276	18.7498
##eeeeeyyyyyyyyyyyyyyyyeeeee33	chr2:149449615-149449937(+)$1	322	35	65	24.6750
ddd^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr19:45323016-45323277(+)$1	261	1	31	27.1344
ddd[dddd^^^^^^^^^^^^^^^^^^^ddd	chr2:55521834-55522194(-)$1	360	184	214	27.2971
eeeee^^^^^^^^^^^^^^^^^^^^^eeee	chr19:57323544-57323810(-)$1	266	220	250	27.1931
ccc[dddd^^^^^^^^^^^^^^^^^^^ddd	chr17:29580055-29580358(+)$1	303	229	259	27.7323
iiii[ccc^^^^^^^^^^^^^^^^^^^^cc	chr3:176741581-176741857(-)$1	276	54	84	28.2409
###eeeee^^^^^^^^^^^^^^^^^^^^ee	chr5:148884368-148884619(-)$1	251	164	194	28.1961
ffffff^^^^^^^^^^^^^^^^^^^^^^^^	chr1:47143910-47144181(-)$1	271	73	103	28.0279
""gggggggwwwwwwwwwwwwwwggggggg	chr2:111924609-111924918(+)$1	309	46	76	20.9059
g!!ffffffwwwwwwwwwwwwwwffffff2	chr2:55254496-55254784(-)$1	288	32	62	19.7445
dddd!!bbxxxxxxxxxxxxxxxbb]dddd	chr3:196803403-196803682(-)$1	279	245	275	21.0814
iiiiiiii^^^^^^^^^^^^^^^^^^^^^i	chr1:193222678-193222970(+)$1	292	79	109	28.3625
hdddd[cccyyyyyyyyyyyyyyyyccc22	chr11:72549016-72549296(-)$1	280	159	189	23.7109
eeee[cccyyyyyyyyyyyyyyyyccc]ee	chr2:233733556-233733869(+)$1	313	9	39	24.7210
d!!eeeeeyyyyyyyyyyyyyyyyeeeee2	chr6:108365427-108365807(-)$1	380	125	155	25.2548
[cccdddd^^^^^^^^^^^^^^^^^^^^^^	chr19:57323631-57323884(-)$1	253	73	103	28.4389
ccc[ddddyyyyyyyyyyyyyyyydddd]c	chr4:73940996-73941276(-)$1	280	239	269	24.9863
[bb[dddd^^^^^^^^^^^^^^^^^^^^^^	chrX:70794344-70794567(+)$1	223	120	150	28.2036
ccceeeee^^^^^^^^^^^^^^^^^^^eee	chr1:54512979-54513238(-)$1	259	40	70	27.8183
[gggggggyyyyyyyyyyyyyyyygggggg	chr11:96075400-96075629(-)$1	229	119	149	25.2493
dddd^^^^^^^^^^^^^^^^^^^^^^dddd	chr12:12273449-12273722(-)$1	273	157	187	26.6425
""dddd^^^^^^^^^^^^^^^^^^^^^^^^	chr3:12347111-12347451(+)$1	340	95	125	28.7338
ggggggg^^^^^^^^^^^^^^^^^^^^^^g	chr1:241795034-241795292(-)$1	258	215	245	28.7209
[dddd^^^^^^^^^^^^^^^^^^^dddd]f	chr7:44618691-44618977(-)$1	286	219	249	25.5153
bb[eeeeexxxxxxxxxxxxxxxeeeeebb	chr3:176741323-176741618(-)$1	295	9	39	21.6322
dbb!!bbyyyyyyyyyyyyyyyybb22bb]	chr14:21491141-21491443(-)$1	302	120	150	22.7228
^^^^^^^^^^^^^^^^^^^^^^^bb]ffff	chrX:118759168-118759462(-)$1	294	228	258	23.6694
bb[eeeeexxxxxxxxxxxxxxxeeeeebb	chr3:176741420-176741652(-)$1	232	43	73	21.6322
!!ggggggguuuuuuuuuuuugggggggcc	chr1:153615508-153615780(+)$1	272	133	163	18.7330
egggggggxxxxxxxxxxxxxxxggggggg	chr16:24801228-24801483(+)$1	255	50	80	22.1695
bb!!dddd^^^^^^^^^^^^^^^^^^dddd	chr17:25949089-25949339(+)$1	250	89	119	26.7913
ff[ccc^^^^^^^^^^^^^^^^^^^ccc]f	chr2:182781259-182781546(+)$1	287	170	200	26.6127
========^^^^^^^^^^^^^^^^^^^^^^	chr3:183889117-183889402(+)$1	285	173	203	28.8434
""ffffff^^^^^^^^^^^^^^^^^^^^^^	chr3:113163598-113163880(-)$1	282	106	136	27.8790
ccc^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr6:28123455-28123728(+)$1	273	76	106	27.7833
=========wwwwwwwwwwwwww=======	chr15:25213819-25214059(+)$1	240	159	189	21.7439
eeeee^^^^^^^^^^^^^^^^^^^^^^eee	chr18:39629511-39629795(+)$1	284	28	58	27.7278
cc!!dddd^^^^^^^^^^^^^^^^^^^^^^	chr7:131175885-131176164(+)$1	279	74	104	28.6253
[bb[bb^^^^^^^^^^^^^^^^^^^^^bbb	chr1:117645299-117645528(+)$1	229	21	51	26.7861
ffff[bb^^^^^^^^^^^^^^^^^^^bb]f	chr19:4423152-4423441(+)$1	289	217	247	26.0864
===========uuuuuuuuuuuu=======	chr6:163994781-163995059(+)$1	278	163	193	19.4929
[ggggggg^^^^^^^^^^^^^^^^^^^^gg	chr2:135816327-135816580(+)$1	253	84	114	28.3118
!!a[dddd^^^^^^^^^^^^^^^^^^^^^^	chr3:48014352-48014715(-)$1	363	111	141	28.7596
c!!eeeeeyyyyyyyyyyyyyyyyeeeee2	chr14:104152437-104152661(+)$1	224	82	112	25.4042

#otherMatches

#Seq PSSM
UAAUGGGUAUUAAUAACAAAAUUCCAUUUC	chr5:75911360-75911666(+)$1	306	218	248	28.8248
CUUCUGCAUAAUGAAUUAACUAGAAAUAAC	chr5:79946586-79946801(-)$1	215	110	140	28.5395
GUGUUUGACUCAACUCAACUCCUUUAACGC	chr11:2150286-2150494(-)$1	208	33	63	26.5104
ACUGAGGCCCCCCCCCAAAAAAAGCCCUCU	chrX:131506929-131507191(-)$1	262	112	142	22.5991
UGUUGCAGUGAUAUCAGAAUUUUGCGUGCG	chr12:109530883-109531182(-)$1	299	3	33	19.1616
CCAUGGCUUCCCCUUCCCACCCCCCUAGCU	chr3:193386369-193386688(+)$1	319	146	176	27.1512
UUAAACUGGUUAAAAAUUGGUUACCGGUUG	chr12:122973909-122974183(-)$1	274	118	148	18.6050
ACUGUUACUAACACCUUGCUCUGUCAUCUC	chr12:32520433-32520718(+)$1	285	105	135	28.1358
CAGAGCUGAUAUUACCACCAGCCAGUUUUC	chr11:118319185-118319449(+)$1	264	79	109	20.6616
AGGGGGAGUCCUCUCUAUUAAUACCUCUCU	chr11:96075306-96075569(-)$1	263	59	89	25.2493
UGCAACCGGGACGCGACUAACUACAUUAAC	chr14:59950261-59950568(-)$1	307	77	107	28.3525
CAUGACUUUUACUAACUCACUUCGGUCUCU	chr2:85547933-85548173(-)$1	240	95	125	20.6925
AAUGCUUUAAGAUAAAACAUAAAGAGGUGU	chr7:86792336-86792594(+)$1	258	41	71	23.1930
UAGAAGCUUUUCCAUUGUCUUUUCUUGCUG	chr1:162340005-162340306(+)$1	301	258	288	28.7209
AGUUGAUUAUCUUUUAAUUUUUAAUUUUGC	chr17:29701694-29701972(+)$1	278	246	276	18.7498
cuucccuucacucuguguaccauagggacu	chr2:149449615-149449937(+)$1	322	35	65	24.6750
CUUaaccccauccccacccucaaccccaag	chr19:45323016-45323277(+)$1	261	1	31	27.1344
GCAUGAAAUAUUAAUUACUUUGUCCAUUUU	chr2:55521834-55522194(-)$1	360	184	214	27.2971
UGUGCUCCUUUGCUUCCCCUCCCCUCGCAU	chr19:57323544-57323810(-)$1	266	220	250	27.1931
GUUACUUUUUAAAUUAUAAAUGAAUGCAAA	chr17:29580055-29580358(+)$1	303	229	259	27.7323
GCAACUUAGAGUAACAUAUACAGACAAAUG	chr3:176741581-176741857(-)$1	276	54	84	28.2409
UCUCAUUUUCUCUCUUAAAUGCUCAAAUAA	chr5:148884368-148884619(-)$1	251	164	194	28.1961
GGACUGCCUAAUAUCUAUUUACCUAACAAC	chr1:47143910-47144181(-)$1	271	73	103	28.0279
UUGUAGAAAUAUUGUAUAUUUAUUUUCUGC	chr2:111924609-111924918(+)$1	309	46	76	20.9059
UAAUUGCUAUUAACAUUUCAUUUUAGUAAA	chr2:55254496-55254784(-)$1	288	32	62	19.7445
GGUCAACUGAAAAUAAAAUGGAGAGGGACC	chr3:196803403-196803682(-)$1	279	245	275	21.0814
UGUUUUUAGCAGCACAACAGUAAUCCAUAU	chr1:193222678-193222970(+)$1	292	79	109	28.3625
AUCUUGUUCAUCACAUAGACUAAUAGAAAG	chr11:72549016-72549296(-)$1	280	159	189	23.7109
GUCAUACUCACAUCUUGCCUAUUUAGUCUG	chr2:233733556-233733869(+)$1	313	9	39	24.7210
UCUGGUAUCUUCUUACUAACAUAAAUAUCU	chr6:108365427-108365807(-)$1	380	125	155	25.2548
CUAACUUGCAUUAAAAAAAAAAAAAUUCUU	chr19:57323631-57323884(-)$1	253	73	103	28.4389
CUGAGAAUUUAAAAAGCCACCACUGUUCCC	chr4:73940996-73941276(-)$1	280	239	269	24.9863
UACUGUCAUUGAUAAUAAUAUAGUUUUUUU	chrX:70794344-70794567(+)$1	223	120	150	28.2036
UCAACUGGCUCCUAUCAUUUUUUUCUUUCA	chr1:54512979-54513238(-)$1	259	40	70	27.8183
AGGGGGAGUCCUCUCUAUUAAUACCUCUCU	chr11:96075400-96075629(-)$1	229	119	149	25.2493
AAGGAAAAAAAUGCAAUUAAUACUAACCUU	chr12:12273449-12273722(-)$1	273	157	187	26.6425
AUUCUACCUCCUAAUCCCAAAUAGCCAUCA	chr3:12347111-12347451(+)$1	340	95	125	28.7338
AAAUGUGAAGAUAAGAUGAACUAAACAAAC	chr1:241795034-241795292(-)$1	258	215	245	28.7209
UCUGCUUUCUCUUUGUCCACUUACGCAGUA	chr7:44618691-44618977(-)$1	286	219	249	25.5153
GUCACUAAUUAUUUUGAGGCCUUUUAGUAC	chr3:176741323-176741618(-)$1	295	9	39	21.6322
CGUACUGAUCUUAUUCUAACUCACACCACU	chr14:21491141-21491443(-)$1	302	120	150	22.7228
GCACCCCCAACACAAGCAUCUAAUCGUAGA	chrX:118759168-118759462(-)$1	294	228	258	23.6694
GUCACUAAUUAUUUUGAGGCCUUUUAGUAC	chr3:176741420-176741652(-)$1	232	43	73	21.6322
UAGAAUCUACUUUGUGUCUCUUGGAUUUAC	chr1:153615508-153615780(+)$1	272	133	163	18.7330
UCAGUGGUCAACCUCAAAAUAUUACCACUG	chr16:24801228-24801483(+)$1	255	50	80	22.1695
CUCAGAGGAUCCCACUAACUGAGCUCCCUC	chr17:25949089-25949339(+)$1	250	89	119	26.7913
AGUCUAUCAUCCACUGUCUUUGUUUUAGUC	chr2:182781259-182781546(+)$1	287	170	200	26.6127
CCAGGCCUGAAACAUUUCUUUUCUUUCUUU	chr3:183889117-183889402(+)$1	285	173	203	28.8434
CUUUGCAUGUAACUUACAAUAAAAUUCCUC	chr3:113163598-113163880(-)$1	282	106	136	27.8790
GGAUCAUAAAUUCUUUCCCUAUAACAUUCC	chr6:28123455-28123728(+)$1	273	76	106	27.7833
UGAUGUAGAUUUAUUUAGUUCUUUUUAUGU	chr15:25213819-25214059(+)$1	240	159	189	21.7439
ACCUGGAUAACCUUUUGCUAACAAAAACAG	chr18:39629511-39629795(+)$1	284	28	58	27.7278
AAAUAAAGUCAUCUAACUAUUAAAAAAAAA	chr7:131175885-131176164(+)$1	279	74	104	28.6253
UGGuacaaucuaauaaauacuaauccaguc	chr1:117645299-117645528(+)$1	229	21	51	26.7861
AACGGUUAAGAGAAGAAGAGAAGGUAGAGU	chr19:4423152-4423441(+)$1	289	217	247	26.0864
AGAUAACAUAGUGUGACUUGUUUUUAUGUU	chr6:163994781-163995059(+)$1	278	163	193	19.4929
UUUAUUACAACUCAAUAUUACUAACUCAGU	chr2:135816327-135816580(+)$1	253	84	114	28.3118
AAAUUCCACUAAUAAACAUCUUACAUUAAC	chr3:48014352-48014715(-)$1	363	111	141	28.7596
GUAUUUGUGUCUUUCUAACUUCUAAUAAAC	chr14:104152437-104152661(+)$1	224	82	112	25.4042

#DB
(((((((.......................	chr5:75911360-75911666(+)$1	1	218	248	28.8248
(((.((((......................	chr5:79946586-79946801(-)$1	1	110	140	28.5395
(((((....................)))))	chr11:2150286-2150494(-)$1	1	33	63	26.5104
(..(((((...............).)))).	chrX:131506929-131507191(-)$1	1	112	142	22.5991
(..(((((.............))))).)))	chr12:109530883-109531182(-)$1	1	3	33	19.1616
(((.((((..................))))	chr3:193386369-193386688(+)$1	1	146	176	27.1512
(..(((((((............))))))).	chr12:122973909-122974183(-)$1	1	118	148	18.6050
(.((((((......................	chr12:32520433-32520718(+)$1	1	105	135	28.1358
.(((((((..............))))))))	chr11:118319185-118319449(+)$1	1	79	109	20.6616
.(((((((................))))))	chr11:96075306-96075569(-)$1	1	59	89	25.2493
)))(((((.....................)	chr14:59950261-59950568(-)$1	1	77	107	28.3525
...((((................))))(((	chr2:85547933-85548173(-)$1	1	95	125	20.6925
((((((((...............)))))))	chr7:86792336-86792594(+)$1	1	41	71	23.1930
(((((((......................)	chr1:162340005-162340306(+)$1	1	258	288	28.7209
(((.(((((............)))))..))	chr17:29701694-29701972(+)$1	1	246	276	18.7498
..(((((................)))))..	chr2:149449615-149449937(+)$1	1	35	65	24.6750
(((........................)))	chr19:45323016-45323277(+)$1	1	1	31	27.1344
(((.((((...................)))	chr2:55521834-55522194(-)$1	1	184	214	27.2971
(((((.....................))))	chr19:57323544-57323810(-)$1	1	220	250	27.1931
(((.((((...................)))	chr17:29580055-29580358(+)$1	1	229	259	27.7323
((((.(((....................))	chr3:176741581-176741857(-)$1	1	54	84	28.2409
...(((((....................))	chr5:148884368-148884619(-)$1	1	164	194	28.1961
((((((........................	chr1:47143910-47144181(-)$1	1	73	103	28.0279
..(((((((..............)))))))	chr2:111924609-111924918(+)$1	1	46	76	20.9059
(..((((((..............)))))).	chr2:55254496-55254784(-)$1	1	32	62	19.7445
((((..((...............)).))))	chr3:196803403-196803682(-)$1	1	245	275	21.0814
((((((((.....................)	chr1:193222678-193222970(+)$1	1	79	109	28.3625
(((((.(((................)))..	chr11:72549016-72549296(-)$1	1	159	189	23.7109
((((.(((................))).))	chr2:233733556-233733869(+)$1	1	9	39	24.7210
(..(((((................))))).	chr6:108365427-108365807(-)$1	1	125	155	25.2548
.(((((((......................	chr19:57323631-57323884(-)$1	1	73	103	28.4389
(((.((((................)))).)	chr4:73940996-73941276(-)$1	1	239	269	24.9863
.((.((((......................	chrX:70794344-70794567(+)$1	1	120	150	28.2036
((((((((...................)))	chr1:54512979-54513238(-)$1	1	40	70	27.8183
.(((((((................))))))	chr11:96075400-96075629(-)$1	1	119	149	25.2493
((((......................))))	chr12:12273449-12273722(-)$1	1	157	187	26.6425
..((((........................	chr3:12347111-12347451(+)$1	1	95	125	28.7338
(((((((......................)	chr1:241795034-241795292(-)$1	1	215	245	28.7209
.((((...................)))).)	chr7:44618691-44618977(-)$1	1	219	249	25.5153
((.(((((...............)))))))	chr3:176741323-176741618(-)$1	1	9	39	21.6322
(((..((................))..)).	chr14:21491141-21491443(-)$1	1	120	150	22.7228
.......................)).))))	chrX:118759168-118759462(-)$1	1	228	258	23.6694
((.(((((...............)))))))	chr3:176741420-176741652(-)$1	1	43	73	21.6322
..(((((((............)))))))))	chr1:153615508-153615780(+)$1	1	133	163	18.7330
((((((((...............)))))))	chr16:24801228-24801483(+)$1	1	50	80	22.1695
((..((((..................))))	chr17:25949089-25949339(+)$1	1	89	119	26.7913
((.(((...................))).)	chr2:182781259-182781546(+)$1	1	170	200	26.6127
((((((((......................	chr3:183889117-183889402(+)$1	1	173	203	28.8434
..((((((......................	chr3:113163598-113163880(-)$1	1	106	136	27.8790
(((........................)))	chr6:28123455-28123728(+)$1	1	76	106	27.7833
(((((((((..............)))))))	chr15:25213819-25214059(+)$1	1	159	189	21.7439
(((((......................)))	chr18:39629511-39629795(+)$1	1	28	58	27.7278
((..((((......................	chr7:131175885-131176164(+)$1	1	74	104	28.6253
.((.((.....................)))	chr1:117645299-117645528(+)$1	1	21	51	26.7861
((((.((...................)).)	chr19:4423152-4423441(+)$1	1	217	247	26.0864
(((((((((((............)))))))	chr6:163994781-163995059(+)$1	1	163	193	19.4929
.(((((((....................))	chr2:135816327-135816580(+)$1	1	84	114	28.3118
..(.((((......................	chr3:48014352-48014715(-)$1	1	111	141	28.7596
(..(((((................))))).	chr14:104152437-104152661(+)$1	1	82	112	25.4042

#PSSM
c : 0.20	[ : 0.13	d : 0.11	e : 0.08	g : 0.06	b : 0.06	= : 0.06	f : 0.05	" : 0.05	# : 0.03	i : 0.03	! : 0.03	: : 0.01	h : 0.01	^ : 0.01	
c : 0.16	g : 0.13	! : 0.13	d : 0.10	b : 0.10	e : 0.06	= : 0.06	f : 0.05	" : 0.05	# : 0.03	i : 0.03	[ : 0.01	: : 0.01	^ : 0.01	
g : 0.16	c : 0.16	! : 0.13	d : 0.11	e : 0.08	= : 0.06	f : 0.05	b : 0.05	[ : 0.05	i : 0.03	: : 0.01	# : 0.01	^ : 0.01	a : 0.01	
e : 0.22	g : 0.18	[ : 0.15	d : 0.11	= : 0.06	f : 0.06	c : 0.05	^ : 0.05	! : 0.05	i : 0.03	
d : 0.25	e : 0.22	g : 0.18	= : 0.06	^ : 0.06	[ : 0.05	f : 0.05	c : 0.03	! : 0.03	i : 0.01	b : 0.01	
d : 0.22	g : 0.18	e : 0.16	^ : 0.13	c : 0.06	= : 0.06	f : 0.05	b : 0.05	! : 0.01	i : 0.01	[ : 0.01	
d : 0.20	^ : 0.20	g : 0.18	e : 0.16	c : 0.06	= : 0.06	b : 0.05	f : 0.03	i : 0.01	
^ : 0.27	d : 0.16	e : 0.15	g : 0.13	c : 0.06	= : 0.06	y : 0.05	f : 0.03	a : 0.01	b : 0.01	i : 0.01	
^ : 0.57	y : 0.15	x : 0.10	g : 0.05	= : 0.03	v : 0.01	w : 0.01	e : 0.01	f : 0.01	c : 0.01	
^ : 0.57	y : 0.16	x : 0.10	w : 0.06	u : 0.03	v : 0.01	g : 0.01	= : 0.01	
^ : 0.57	y : 0.16	x : 0.10	w : 0.06	u : 0.05	v : 0.01	= : 0.01	
^ : 0.57	y : 0.16	x : 0.10	u : 0.06	w : 0.06	v : 0.01	
^ : 0.57	y : 0.16	x : 0.10	u : 0.06	w : 0.06	v : 0.01	
^ : 0.57	y : 0.16	x : 0.10	u : 0.06	w : 0.06	v : 0.01	
^ : 0.57	y : 0.16	x : 0.10	u : 0.06	w : 0.06	v : 0.01	
^ : 0.57	y : 0.16	x : 0.10	u : 0.06	w : 0.06	v : 0.01	
^ : 0.57	y : 0.16	x : 0.10	u : 0.06	w : 0.06	v : 0.01	
^ : 0.57	y : 0.16	x : 0.10	u : 0.06	w : 0.06	v : 0.01	
^ : 0.57	y : 0.16	x : 0.10	u : 0.06	w : 0.06	v : 0.01	
^ : 0.57	y : 0.16	x : 0.10	u : 0.06	w : 0.06	v : 0.01	
^ : 0.57	y : 0.16	x : 0.10	u : 0.06	w : 0.06	v : 0.01	
^ : 0.57	y : 0.16	x : 0.10	w : 0.06	e : 0.03	u : 0.03	g : 0.01	
^ : 0.57	y : 0.16	x : 0.10	g : 0.05	w : 0.05	e : 0.03	u : 0.01	
^ : 0.55	y : 0.11	e : 0.08	g : 0.08	= : 0.05	b : 0.05	a : 0.01	d : 0.01	f : 0.01	
^ : 0.54	e : 0.11	g : 0.11	d : 0.05	= : 0.05	b : 0.05	] : 0.01	f : 0.01	y : 0.01	c : 0.01	
^ : 0.50	e : 0.13	g : 0.11	d : 0.06	= : 0.05	c : 0.05	] : 0.03	f : 0.01	2 : 0.01	
^ : 0.42	d : 0.13	e : 0.11	g : 0.11	= : 0.05	c : 0.05	2 : 0.03	f : 0.03	] : 0.01	b : 0.01	
^ : 0.30	d : 0.16	e : 0.15	g : 0.11	c : 0.06	f : 0.05	= : 0.05	b : 0.05	2 : 0.01	] : 0.01	
^ : 0.25	e : 0.13	d : 0.13	g : 0.11	c : 0.08	] : 0.06	b : 0.06	f : 0.05	= : 0.05	3 : 0.01	2 : 0.01	
^ : 0.18	d : 0.13	e : 0.11	g : 0.11	2 : 0.10	c : 0.10	f : 0.08	= : 0.05	b : 0.05	3 : 0.01	i : 0.01	] : 0.01	

#score	1493.1436968752705
#seq	59
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_transcript_m2_run2.txt

#BEAR
!!dddduuuuuuuuuuuudddd22a	chr2:27013862-27014152(+)$1	290	147	172	23.1915
hhhhhhuuuuuuuuuuuuhhhhhhh	chr3:38289899-38290154(+)$1	255	90	115	21.3302
:eeeeewwwwwwwwwwwwwweeeee	chr8:42131798-42132086(+)$1	288	184	209	22.0833
"cccwwwwwwwwwwwwwwccc22dd	chr15:81281648-81281947(-)$1	299	84	109	21.9877
eeeeebbtttttttttttbb]eeee	chr1:91415818-91416113(-)$1	295	51	76	22.3712
:ddddyyyyyyyyyyyyyyyydddd	chrX:123230581-123230875(+)$1	294	124	149	20.3752
:eeeeeuuuuuuuuuuuueeeee:e	chr13:95951729-95952009(-)$1	280	146	171	22.3019
gggggggtttttttttttggggggg	chr7:107139450-107139740(-)$1	290	1	26	22.3710
d[ddddwwwwwwwwwwwwwwdddd2	chr15:27425790-27426104(+)$1	314	133	158	21.5789
:eeeeeuuuuuuuuuuuueeeee::	chrX:110937506-110937823(+)$1	317	92	117	21.2700
gggggguuuuuuuuuuuuggggggg	chr12:122973927-122974192(-)$1	265	131	156	23.8867
hhhhhhuuuuuuuuuuuuhhhhhhh	chr7:152104831-152105097(-)$1	266	194	219	21.3302
gggggguuuuuuuuuuuuggggggg	chr1:78415378-78415683(-)$1	305	19	44	23.8867
ffffffuuuuuuuuuuuuffffffd	chr14:21461889-21462202(+)$1	313	208	233	22.5714
:eeeeewwwwwwwwwwwwwweeeee	chr4:120983854-120984123(-)$1	269	75	100	22.0833
[bbyyyyyyyyyyyyyyyybb]ccc	chr3:182590284-182590562(+)$1	278	197	222	20.2953
!!dddduuuuuuuuuuuudddd22c	chr3:12941551-12941859(-)$1	308	116	141	23.2205
gggggwwwwwwwwwwwwwwgggggg	chr2:111422352-111422672(-)$1	320	87	112	22.8620
gggggguuuuuuuuuuuuggggggg	chr1:113200909-113201226(+)$1	317	220	245	23.8867
=======ttttttttttt=======	chrX:128676191-128676457(+)$1	266	218	243	22.7108
[ddddyyyyyyyyyyyyyyyydddd	chr6:155603474-155603779(-)$1	305	140	165	21.3372
:ddddyyyyyyyyyyyyyyyydddd	chr21:23722097-23722417(+)$1	320	90	115	20.3752
cc!!ccctttttttttttccc22cc	chr21:23718216-23718511(+)$1	295	135	160	22.4363
$ddddvvvvvvvvvvvvvddddbb]	chr4:76447652-76447945(+)$1	293	243	268	22.2958
iiii[bbtttttttttttbb]iiii	chr7:74132412-74132743(+)$1	331	290	315	21.9618
$$cccvvvvvvvvvvvvvccc333c	chrM:5007-5276(+)$1	269	137	162	23.4303
eeecccuuuuuuuuuuuuccc]eee	chr9:19087205-19087487(-)$1	282	135	160	24.5173
!eeeeeuuuuuuuuuuuueeeee22	chr2:172825090-172825394(+)$1	304	202	227	23.9203
eeeeeyyyyyyyyyyyyyyyyeeee	chr7:91882540-91882810(+)$1	270	85	110	22.0198
[cccwwwwwwwwwwwwwwccc]ddd	chr16:47497630-47497931(+)$1	301	137	162	22.3329
#eeeeettttttttttteeeee333	chr7:107107518-107107825(-)$1	307	15	40	22.3794
[ddddvvvvvvvvvvvvvddddfff	chr15:40910477-40910780(+)$1	303	210	235	22.8228
eee[ccctttttttttttccc]eee	chr8:74614193-74614451(-)$1	258	22	47	23.2916
iiiiiiuuuuuuuuuuuuiiiiiii	chr7:152007971-152008278(-)$1	307	94	119	23.8719
!addddwwwwwwwwwwwwwwdddd]	chr2:171972441-171972717(-)$1	276	191	216	22.1200
e"""bbvvvvvvvvvvvvvbb]eee	chrM:10023-10247(+)$1	224	154	179	22.4871
dddcccuuuuuuuuuuuuccc]ddd	chr19:29000602-29000928(-)$1	326	50	75	23.7432
:eeeeevvvvvvvvvvvvveeeee:	chr8:74569033-74569329(-)$1	296	52	77	22.0053
:eeeeewwwwwwwwwwwwwweeeee	chrM:9416-9631(+)$1	215	104	129	22.0833
gggggggtttttttttttggggggg	chr7:12386778-12387037(-)$1	259	35	60	22.3710
[eeeeewwwwwwwwwwwwwweeeee	chr1:25805602-25805887(+)$1	285	31	56	23.0453
eeeeewwwwwwwwwwwwwweeeee4	chr12:64817095-64817367(+)$1	272	84	109	23.0158
eee[ccctttttttttttccc]eee	chr1:161566603-161566889(+)$1	286	168	193	23.2916
[ddddvvvvvvvvvvvvvdddd22e	chr14:31086835-31087174(+)$1	339	250	275	22.8398
[bbyyyyyyyyyyyyyyyybb]ddd	chr15:63357296-63357552(+)$1	256	196	221	20.2503
%%%cccuuuuuuuuuuuuccc22==	chr7:116141931-116142204(+)$1	273	218	243	22.0911
eee[bbuuuuuuuuuuuubb]eeee	chr19:58336078-58336338(+)$1	260	233	258	23.4143
ggggggvvvvvvvvvvvvvgggggg	chr21:23680785-23681113(+)$1	328	263	288	23.5312
eeeeebbtttttttttttbb]eeee	chr4:34125756-34126025(-)$1	269	182	207	22.3712
iiiiiiuuuuuuuuuuuuiiiiiii	chr1:220182524-220182828(-)$1	304	195	220	23.8719
fffffwwwwwwwwwwwwwwffffff	chr16:23896443-23896697(+)$1	254	151	176	21.6691
:eeeeewwwwwwwwwwwwwweeeee	chr12:27113277-27113555(+)$1	278	81	106	22.0833
fffffwwwwwwwwwwwwwwffffff	chr12:51381271-51381613(-)$1	342	199	224	21.6691
eeeeevvvvvvvvvvvvveeeee44	chr8:130518617-130518913(-)$1	296	105	130	23.5521
[fffffftttttttttttffffff3	chr15:93520937-93521212(+)$1	275	12	37	21.6343
%eeeeeuuuuuuuuuuuueeeeeff	chr2:190758289-190758509(+)$1	220	120	145	23.4823
ddcccvvvvvvvvvvvvvccc]ddd	chr1:171477749-171478037(+)$1	288	105	130	23.2592
$$cccvvvvvvvvvvvvvccc6666	chr6:17663802-17664100(-)$1	298	68	93	21.1736
''dddduuuuuuuuuuuudddd]dd	chr2:217017621-217017877(+)$1	256	213	238	22.0748
ggggggvvvvvvvvvvvvvgggggg	chr1:143173775-143174089(+)$1	314	209	234	23.5312
eeeeevvvvvvvvvvvvveeeee44	chr4:80940948-80941213(-)$1	265	60	85	23.5521
[fffffftttttttttttffffff]	chr6:170069554-170069806(-)$1	252	141	166	21.6558
eeeeeyyyyyyyyyyyyyyyyeeee	chrX:138102851-138103147(-)$1	296	148	173	22.0198
cc[cccuuuuuuuuuuuucccccc]	chr1:24752352-24752654(+)$1	302	165	190	23.8526
fffffwwwwwwwwwwwwwwffffff	chr1:212464846-212465154(+)$1	308	263	288	21.6691
"""cccuuuuuuuuuuuuccc333e	chr4:111115676-111115931(-)$1	255	98	123	24.2677
b!!ccctttttttttttccc22bb]	chr6:122746564-122746858(+)$1	294	48	73	21.2684
====avvvvvvvvvvvvva]=====	chr1:8545527-8545815(-)$1	288	221	246	23.6508

#otherMatches

#Seq PSSM
guuuacuuuaauaacucuguaauac	chr2:27013862-27014152(+)$1	290	147	172	23.1915
UUAAAACUAUUACUAACAUUUUAAA	chr3:38289899-38290154(+)$1	255	90	115	21.3302
ccaccacccuuuccugccucuggug	chr8:42131798-42132086(+)$1	288	184	209	22.0833
UGACCCCUUACCUGUUCUGUCUUGG	chr15:81281648-81281947(-)$1	299	84	109	21.9877
GGCCUAGUACUUAAUAUCCUCAGGU	chr1:91415818-91416113(-)$1	295	51	76	22.3712
CAAACUAAUUCACACUAACAUGUUU	chrX:123230581-123230875(+)$1	294	124	149	20.3752
aaucauacacuaacacuaaugauag	chr13:95951729-95952009(-)$1	280	146	171	22.3019
gagaucuacccucuuaacagauuuu	chr7:107139450-107139740(-)$1	290	1	26	22.3710
CUAAUGCUCUUAUCCACUCACAUUU	chr15:27425790-27426104(+)$1	314	133	158	21.5789
CACAAAUUCAAUACUUUUUUUGUUU	chrX:110937506-110937823(+)$1	317	92	117	21.2700
ACUGGUUAAAAAUUGGUUACCGGUU	chr12:122973927-122974192(-)$1	265	131	156	23.8867
CUCAAGUUGUAUAGUUGUUUUGGGC	chr7:152104831-152105097(-)$1	266	194	219	21.3302
GAAAGCUGAGUUUUAUGUGUUUUCA	chr1:78415378-78415683(-)$1	305	19	44	23.8867
UGGUGAUUUAUAAUAAUUUUGCCAU	chr14:21461889-21462202(+)$1	313	208	233	22.5714
acaagcuuucauuaacucuugcuug	chr4:120983854-120984123(-)$1	269	75	100	22.0833
GUACAAUUUUUGUUCUAGCUAGAUA	chr3:182590284-182590562(+)$1	278	197	222	20.2953
UACACAAUCAUUACUAACUGUGCCA	chr3:12941551-12941859(-)$1	308	116	141	23.2205
gucugcccucuauaaacuucggacu	chr2:111422352-111422672(-)$1	320	87	112	22.8620
GUAUUGAUUAUUCUCCCACAAUAUU	chr1:113200909-113201226(+)$1	317	220	245	23.8867
auaguuuuaaauacauauaaacuau	chrX:128676191-128676457(+)$1	266	218	243	22.7108
ACUUAUUCUCAAUCAAAACUCUAAG	chr6:155603474-155603779(-)$1	305	140	165	21.3372
agacaCAUACAAACCCUUUCAUGUC	chr21:23722097-23722417(+)$1	320	90	115	20.3752
UGUAAUGAAUUUCACUAACAUCCCA	chr21:23718216-23718511(+)$1	295	135	160	22.4363
uguaauguuugucuuucuuugccug	chr4:76447652-76447945(+)$1	293	243	268	22.2958
ACAAAGCCAGAGGAUAUAGUCUUGU	chr7:74132412-74132743(+)$1	331	290	315	21.9618
CACGACCCUACUACUAUCUCGCACC	chrM:5007-5276(+)$1	269	137	162	23.4303
UAUGAGUCCUAGGUCCAUCUCAAUA	chr9:19087205-19087487(-)$1	282	135	160	24.5173
UGCAGAUUUUUCUACUCUUCUGUCA	chr2:172825090-172825394(+)$1	304	202	227	23.9203
GUAGACCAUCUCCCACCUUCAUCUA	chr7:91882540-91882810(+)$1	270	85	110	22.0198
AUUGCUUCUAACCUUUACUAAACAG	chr16:47497630-47497931(+)$1	301	137	162	22.3329
aaUAAUAAUAAUUUCAGAUUAUCAA	chr7:107107518-107107825(-)$1	307	15	40	22.3794
ACUAUCCAGGAAAUAAAAAUAGAGA	chr15:40910477-40910780(+)$1	303	210	235	22.8228
gacuguagucccccuaugugcuguc	chr8:74614193-74614451(-)$1	258	22	47	23.2916
uaaaauGACUAAAAACUAAUUUUGU	chr7:152007971-152008278(-)$1	307	94	119	23.8719
agcuauuuuacuacuaauuuauaga	chr2:171972441-171972717(-)$1	276	191	216	22.1200
GCUUCGACCCUAUAUCCCCCGCCCG	chrM:10023-10247(+)$1	224	154	179	22.4871
caugcaucccauaccuauugcaaug	chr19:29000602-29000928(-)$1	326	50	75	23.7432
agguauucauaacuguuauauauca	chr8:74569033-74569329(-)$1	296	52	77	22.0053
GCCUAGCCCCUACCCCCCAACUAGG	chrM:9416-9631(+)$1	215	104	129	22.0833
AAAUGUGCUUUACUAACAUACAUUU	chr7:12386778-12387037(-)$1	259	35	60	22.3710
UCCUGAUCAUUGCUUUUAAUUUAGG	chr1:25805602-25805887(+)$1	285	31	56	23.0453
AGAAGCCUCUUAAUCCUUCCUUUUU	chr12:64817095-64817367(+)$1	272	84	109	23.0158
GAUCCUCAAAUGAGCCAGGAGUAUC	chr1:161566603-161566889(+)$1	286	168	193	23.2916
CUUAAUCUAUUAACAUAUUUAAAUG	chr14:31086835-31087174(+)$1	339	250	275	22.8398
AGUUCUUCAUUCUAAUAUCACCCUG	chr15:63357296-63357552(+)$1	256	196	221	20.2503
AUUUGGAAAUGUGAAGUACCAUAUU	chr7:116141931-116142204(+)$1	273	218	243	22.0911
uggaguuucgcucucauugccccau	chr19:58336078-58336338(+)$1	260	233	258	23.4143
uaagcagacaguuauacaaugcuua	chr21:23680785-23681113(+)$1	328	263	288	23.5312
GUUCUAGAAcaaauaucgcugagag	chr4:34125756-34126025(-)$1	269	182	207	22.3712
GCUAUACAUAUUCUAAAUUGUAGCU	chr1:220182524-220182828(-)$1	304	195	220	23.8719
UGUGGCUUUUUACCACUAUCCACAG	chr16:23896443-23896697(+)$1	254	151	176	21.6691
AGUUGGCUAACACGCAUGAACUAAC	chr12:27113277-27113555(+)$1	278	81	106	22.0833
CCUCAGAUUGAAAAGCUUAUGAGGA	chr12:51381271-51381613(-)$1	342	199	224	21.6691
auagggccauucaacuaaucuauuu	chr8:130518617-130518913(-)$1	296	105	130	23.5521
CUGUGGUUCUCAACACUUACCAUAU	chr15:93520937-93521212(+)$1	275	12	37	21.6343
UUGUGCUUGCUUUUAUCUGUAcagc	chr2:190758289-190758509(+)$1	220	120	145	23.4823
AACGUUGGACAUUUUAAUACGCUUG	chr1:171477749-171478037(+)$1	288	105	130	23.2592
UUAACUUGUAUUUAUUUUGUUUACU	chr6:17663802-17664100(-)$1	298	68	93	21.1736
ucagcucucauucucaccagcuuuu	chr2:217017621-217017877(+)$1	256	213	238	22.0748
acagagccaaaacauauuauucugu	chr1:143173775-143174089(+)$1	314	209	234	23.5312
UGUCAUUUUUUUCCCUUUUGAUAUC	chr4:80940948-80941213(-)$1	265	60	85	23.5521
UUAAUGUGCAAAGAAUUAACAUUGU	chr6:170069554-170069806(-)$1	252	141	166	21.6558
UUCUCCACCCCUAACAACCAAGAGA	chrX:138102851-138103147(-)$1	296	148	173	22.0198
uccucacaaaagcucucaugagaua	chr1:24752352-24752654(+)$1	302	165	190	23.8526
AUGAUUCUACUGGUUUAUUGUCAUU	chr1:212464846-212465154(+)$1	308	263	288	21.6691
ACUUACUAACCAUAGCACGUGUUAA	chr4:111115676-111115931(-)$1	255	98	123	24.2677
guuauucucucucgccuaguuucuc	chr6:122746564-122746858(+)$1	294	48	73	21.2684
gaaucuuguuuuuucuuuguauuua	chr1:8545527-8545815(-)$1	288	221	246	23.6508

#DB
..((((............))))..)	chr2:27013862-27014152(+)$1	1	147	172	23.1915
((((((............)))))))	chr3:38289899-38290154(+)$1	1	90	115	21.3302
.(((((..............)))))	chr8:42131798-42132086(+)$1	1	184	209	22.0833
.(((..............)))..))	chr15:81281648-81281947(-)$1	1	84	109	21.9877
(((((((...........)).))))	chr1:91415818-91416113(-)$1	1	51	76	22.3712
.((((................))))	chrX:123230581-123230875(+)$1	1	124	149	20.3752
.(((((............))))).(	chr13:95951729-95952009(-)$1	1	146	171	22.3019
(((((((...........)))))))	chr7:107139450-107139740(-)$1	1	1	26	22.3710
(.((((..............)))).	chr15:27425790-27426104(+)$1	1	133	158	21.5789
.(((((............)))))..	chrX:110937506-110937823(+)$1	1	92	117	21.2700
((((((............)))))))	chr12:122973927-122974192(-)$1	1	131	156	23.8867
((((((............)))))))	chr7:152104831-152105097(-)$1	1	194	219	21.3302
((((((............)))))))	chr1:78415378-78415683(-)$1	1	19	44	23.8867
((((((............)))))))	chr14:21461889-21462202(+)$1	1	208	233	22.5714
.(((((..............)))))	chr4:120983854-120984123(-)$1	1	75	100	22.0833
.((................)).)))	chr3:182590284-182590562(+)$1	1	197	222	20.2953
..((((............))))..)	chr3:12941551-12941859(-)$1	1	116	141	23.2205
(((((..............))))))	chr2:111422352-111422672(-)$1	1	87	112	22.8620
((((((............)))))))	chr1:113200909-113201226(+)$1	1	220	245	23.8867
(((((((...........)))))))	chrX:128676191-128676457(+)$1	1	218	243	22.7108
.((((................))))	chr6:155603474-155603779(-)$1	1	140	165	21.3372
.((((................))))	chr21:23722097-23722417(+)$1	1	90	115	20.3752
((..(((...........)))..))	chr21:23718216-23718511(+)$1	1	135	160	22.4363
.((((.............)))))).	chr4:76447652-76447945(+)$1	1	243	268	22.2958
((((.((...........)).))))	chr7:74132412-74132743(+)$1	1	290	315	21.9618
..(((.............)))...)	chrM:5007-5276(+)$1	1	137	162	23.4303
((((((............))).)))	chr9:19087205-19087487(-)$1	1	135	160	24.5173
.(((((............)))))..	chr2:172825090-172825394(+)$1	1	202	227	23.9203
(((((................))))	chr7:91882540-91882810(+)$1	1	85	110	22.0198
.(((..............))).)))	chr16:47497630-47497931(+)$1	1	137	162	22.3329
.(((((...........)))))...	chr7:107107518-107107825(-)$1	1	15	40	22.3794
.((((.............)))))))	chr15:40910477-40910780(+)$1	1	210	235	22.8228
(((.(((...........))).)))	chr8:74614193-74614451(-)$1	1	22	47	23.2916
((((((............)))))))	chr7:152007971-152008278(-)$1	1	94	119	23.8719
.(((((..............)))).	chr2:171972441-171972717(-)$1	1	191	216	22.1200
(...((.............)).)))	chrM:10023-10247(+)$1	1	154	179	22.4871
((((((............))).)))	chr19:29000602-29000928(-)$1	1	50	75	23.7432
.(((((.............))))).	chr8:74569033-74569329(-)$1	1	52	77	22.0053
.(((((..............)))))	chrM:9416-9631(+)$1	1	104	129	22.0833
(((((((...........)))))))	chr7:12386778-12387037(-)$1	1	35	60	22.3710
.(((((..............)))))	chr1:25805602-25805887(+)$1	1	31	56	23.0453
(((((..............))))).	chr12:64817095-64817367(+)$1	1	84	109	23.0158
(((.(((...........))).)))	chr1:161566603-161566889(+)$1	1	168	193	23.2916
.((((.............))))..)	chr14:31086835-31087174(+)$1	1	250	275	22.8398
.((................)).)))	chr15:63357296-63357552(+)$1	1	196	221	20.2503
...(((............)))..))	chr7:116141931-116142204(+)$1	1	218	243	22.0911
(((.((............)).))))	chr19:58336078-58336338(+)$1	1	233	258	23.4143
((((((.............))))))	chr21:23680785-23681113(+)$1	1	263	288	23.5312
(((((((...........)).))))	chr4:34125756-34126025(-)$1	1	182	207	22.3712
((((((............)))))))	chr1:220182524-220182828(-)$1	1	195	220	23.8719
(((((..............))))))	chr16:23896443-23896697(+)$1	1	151	176	21.6691
.(((((..............)))))	chr12:27113277-27113555(+)$1	1	81	106	22.0833
(((((..............))))))	chr12:51381271-51381613(-)$1	1	199	224	21.6691
(((((.............)))))..	chr8:130518617-130518913(-)$1	1	105	130	23.5521
.((((((...........)))))).	chr15:93520937-93521212(+)$1	1	12	37	21.6343
.(((((............)))))))	chr2:190758289-190758509(+)$1	1	120	145	23.4823
(((((.............))).)))	chr1:171477749-171478037(+)$1	1	105	130	23.2592
..(((.............)))....	chr6:17663802-17664100(-)$1	1	68	93	21.1736
..((((............)))).))	chr2:217017621-217017877(+)$1	1	213	238	22.0748
((((((.............))))))	chr1:143173775-143174089(+)$1	1	209	234	23.5312
(((((.............)))))..	chr4:80940948-80941213(-)$1	1	60	85	23.5521
.((((((...........)))))).	chr6:170069554-170069806(-)$1	1	141	166	21.6558
(((((................))))	chrX:138102851-138103147(-)$1	1	148	173	22.0198
((.(((............)))))).	chr1:24752352-24752654(+)$1	1	165	190	23.8526
(((((..............))))))	chr1:212464846-212465154(+)$1	1	263	288	21.6691
...(((............)))...)	chr4:111115676-111115931(-)$1	1	98	123	24.2677
(..(((...........)))..)).	chr6:122746564-122746858(+)$1	1	48	73	21.2684
(((((.............).)))))	chr1:8545527-8545815(-)$1	1	221	246	23.6508

#PSSM
e : 0.17	: : 0.13	[ : 0.13	g : 0.11	! : 0.05	f : 0.05	d : 0.04	$ : 0.04	i : 0.04	h : 0.02	" : 0.02	= : 0.02	c : 0.02	% : 0.02	# : 0.01	' : 0.01	b : 0.01	
e : 0.32	d : 0.11	g : 0.11	f : 0.08	c : 0.05	! : 0.04	i : 0.04	h : 0.02	b : 0.02	= : 0.02	$ : 0.02	" : 0.02	[ : 0.01	a : 0.01	% : 0.01	' : 0.01	
e : 0.32	d : 0.17	g : 0.11	f : 0.08	c : 0.07	i : 0.04	h : 0.02	b : 0.02	= : 0.02	! : 0.02	" : 0.02	% : 0.01	[ : 0.01	
e : 0.26	d : 0.16	c : 0.16	g : 0.11	f : 0.08	i : 0.04	[ : 0.04	h : 0.02	y : 0.02	= : 0.02	! : 0.01	" : 0.01	
e : 0.26	c : 0.17	d : 0.16	g : 0.11	f : 0.08	h : 0.02	w : 0.02	y : 0.02	i : 0.02	b : 0.02	= : 0.01	[ : 0.01	a : 0.01	
e : 0.16	c : 0.13	v : 0.13	w : 0.10	y : 0.10	g : 0.10	d : 0.07	b : 0.07	f : 0.04	h : 0.02	i : 0.02	= : 0.01	
u : 0.30	w : 0.20	v : 0.19	y : 0.10	b : 0.04	c : 0.04	g : 0.02	t : 0.02	f : 0.02	= : 0.01	
u : 0.30	w : 0.20	t : 0.19	v : 0.19	y : 0.10	
u : 0.30	w : 0.20	t : 0.19	v : 0.19	y : 0.10	
u : 0.30	w : 0.20	t : 0.19	v : 0.19	y : 0.10	
u : 0.30	w : 0.20	t : 0.19	v : 0.19	y : 0.10	
u : 0.30	w : 0.20	t : 0.19	v : 0.19	y : 0.10	
u : 0.30	w : 0.20	t : 0.19	v : 0.19	y : 0.10	
u : 0.30	w : 0.20	t : 0.19	v : 0.19	y : 0.10	
u : 0.30	w : 0.20	t : 0.19	v : 0.19	y : 0.10	
u : 0.30	w : 0.20	t : 0.19	v : 0.19	y : 0.10	
u : 0.30	w : 0.20	t : 0.19	v : 0.19	y : 0.10	
u : 0.30	w : 0.20	v : 0.19	t : 0.16	y : 0.10	e : 0.01	c : 0.01	
c : 0.20	w : 0.17	y : 0.10	e : 0.10	d : 0.08	g : 0.07	b : 0.05	v : 0.05	f : 0.04	h : 0.02	i : 0.02	= : 0.01	a : 0.01	
c : 0.20	e : 0.13	g : 0.11	w : 0.10	b : 0.10	d : 0.08	f : 0.08	y : 0.07	h : 0.02	i : 0.02	= : 0.01	] : 0.01	
e : 0.20	c : 0.19	d : 0.11	g : 0.11	f : 0.08	y : 0.07	] : 0.05	b : 0.04	h : 0.02	= : 0.02	i : 0.02	2 : 0.01	
e : 0.27	d : 0.16	] : 0.13	g : 0.11	f : 0.08	2 : 0.05	i : 0.04	h : 0.02	= : 0.02	3 : 0.02	6 : 0.01	c : 0.01	
e : 0.32	d : 0.13	g : 0.11	f : 0.10	2 : 0.08	i : 0.04	3 : 0.04	h : 0.02	c : 0.02	= : 0.02	b : 0.02	6 : 0.01	] : 0.01	
e : 0.23	d : 0.16	g : 0.11	f : 0.11	2 : 0.05	c : 0.04	= : 0.04	i : 0.04	3 : 0.04	h : 0.02	: : 0.02	b : 0.02	4 : 0.02	6 : 0.01	
e : 0.25	d : 0.14	g : 0.11	] : 0.07	f : 0.07	c : 0.05	= : 0.04	i : 0.04	4 : 0.04	h : 0.02	2 : 0.02	: : 0.02	3 : 0.02	a : 0.01	6 : 0.01	

#score	1531.1881005209923
#seq	68
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF239WCW_DGCR8_CDS_m3_run1.txt

#BEAR
ff[a[bbnnnnnbb]a]f	chr15:65578581-65578821(-)$1	240	95	113	8.5205
b[ccc[annnnna]ccc3	chr22:20073867-20074168(+)$1	301	265	283	9.3619
ffffffooooooffffff	chr19:46522399-46522676(+)$1	277	37	55	9.2485
fff[ccclllccc]ffff	chr22:20073654-20073903(+)$1	249	186	204	7.2289
eeee[bbnnnnnbbeeee	chr12:62996652-62996879(+)$1	227	93	111	7.6070
!!eeeeennnnneeeee2	chr17:33966639-33966880(+)$1	241	20	38	7.9240
hhhhcccnnnnnccc]hh	chr7:150935513-150935736(+)$1	223	199	217	7.8342
fffffffoooooofffff	chr9:139564627-139564843(+)$1	216	47	65	8.9252
gggggggnnnnngggggg	chr19:917492-917733(+)$1	241	6	24	9.4886
hh[bb[annnnna]bb]h	chr22:20073593-20073819(+)$1	226	21	39	9.1328
!!ffffffmmmmffffff	chr19:44096570-44096858(-)$1	288	128	146	6.5715
hh[bb[annnnna]bb]h	chr22:20073516-20073723(+)$1	207	98	116	9.1328
fffff[allla]ffffff	chr19:813520-813749(+)$1	229	33	51	8.5213
eeeeeeennnnneeeee2	chr7:150935651-150935924(+)$1	273	81	99	7.8595
eee[cccnnnnnccceee	chr9:101558279-101558523(-)$1	244	176	194	8.6887
hh[bb[annnnna]bb]h	chr22:20073532-20073758(+)$1	226	82	100	9.1328
gggggggnnnnngggggg	chr3:49050518-49050775(+)$1	257	227	245	9.4886
ffffffooooooffffff	chr22:20074054-20074287(+)$1	233	192	210	9.2485
ffffffooooooffffff	chr9:139564511-139564722(+)$1	211	164	182	9.2485
fff[cccnnnnncccfff	chr12:62996797-62997070(+)$1	273	5	23	10.0618
hh[bb[annnnna]bb]h	chr22:20073462-20073716(+)$1	254	152	170	9.1328
ccccccnnnnnccc]ccc	chr8:41513164-41513391(-)$1	227	0	18	7.0024
gggggggnnnnngggggg	chr16:1821310-1821567(-)$1	257	109	127	9.4886
:ffffffnnnnnffffff	chr19:18112274-18112507(+)$1	233	138	156	9.8239
fffffffoooooofffff	chr9:139564643-139564880(+)$1	237	31	49	8.9252
b[ffffffmmmmffffff	chr9:139564680-139564892(+)$1	212	140	158	6.5189
gggggggnnnnngggggg	chr5:154135498-154135746(+)$1	248	120	138	9.4886
effffffnnnnnffffff	chr19:18111975-18112272(+)$1	297	168	186	10.9261
fffffrrrrrrrrrffff	chr9:101558330-101558587(-)$1	257	129	147	6.3934
ffffffooooooffffff	chr22:20074087-20074313(+)$1	226	159	177	9.2485
#fffffflllffffff33	chr17:38559070-38559332(-)$1	262	35	53	6.8397
ffffffooooooffffff	chr17:30800858-30801064(+)$1	206	154	172	9.2485
[ffffffnnnnnffffff	chrX:53581764-53582010(-)$1	246	87	105	11.0088
b[ffffffmmmmffffff	chr22:20073835-20074067(+)$1	232	15	33	6.5189
hh[bb[annnnna]bb]h	chr22:20073440-20073661(+)$1	221	174	192	9.1328
ee[ddddnnnnndddd]e	chr9:101558651-101558910(-)$1	259	62	80	7.2731
ggccc[annnnna]ccc]	chr5:154135214-154135449(+)$1	235	6	24	9.7127
ffeeeeeooooooeeeee	chr1:248020672-248020920(+)$1	248	56	74	6.4325
ddeeeeennnnneeeee3	chr5:179046277-179046530(-)$1	253	31	49	7.6527
gggggggnnnnngggggg	chr19:46142015-46142254(-)$1	239	189	207	9.4886
fff!!bbnnnnnbbffff	chr5:31515522-31515791(-)$1	269	130	148	9.2106
ffffffooooooffffff	chr16:28877662-28877918(+)$1	256	118	136	9.2485
b[fffffflllffffff]	chr22:20073993-20074254(+)$1	261	73	91	7.2151
ffffffooooooffffff	chr19:2270306-2270559(+)$1	253	140	158	9.2485
ffffffooooooffffff	chr17:30800846-30801058(+)$1	212	166	184	9.2485
effffffnnnnnffffff	chr19:18112126-18112390(+)$1	264	17	35	10.9261
fffff[annnnna]ffff	chr17:80211014-80211280(-)$1	266	103	121	11.3069
eee[cccnnnnnccc]ee	chr1:156389923-156390193(-)$1	270	115	133	8.6757
hh[bb[annnnna]bb]h	chr22:20073378-20073640(+)$1	262	236	254	9.1328
hh[bb[annnnna]bb]h	chr22:20073523-20073732(+)$1	209	91	109	9.1328

#otherMatches

#Seq PSSM
GGGCCGCGACAUGCUGGC	chr15:65578581-65578821(-)$1	240	95	113	8.5205
CAGGCGGGUUCACGGCUA	chr22:20073867-20074168(+)$1	301	265	283	9.3619
GGAGACAGUGGGGUUUUU	chr19:46522399-46522676(+)$1	277	37	55	9.2485
AAGAUUAGCGUGAGCUUU	chr22:20073654-20073903(+)$1	249	186	204	7.2289
UUUUCGCCUCCUGUAGAG	chr12:62996652-62996879(+)$1	227	93	111	7.6070
GAUGAGCCAGAUGCUCGA	chr17:33966639-33966880(+)$1	241	20	38	7.9240
CCGUGCCCAGCUGGCUAU	chr7:150935513-150935736(+)$1	223	199	217	7.8342
CCGCCGGCAGUUACUGGU	chr9:139564627-139564843(+)$1	216	47	65	8.9252
GGCCAUGCACACCGUGGC	chr19:917492-917733(+)$1	241	6	24	9.4886
CAGUGGUGCAGAGGUAAU	chr22:20073593-20073819(+)$1	226	21	39	9.1328
AGGGCUAUGCGAAUGGCU	chr19:44096570-44096858(-)$1	288	128	146	6.5715
CAGUGGUGCAGAGGUAAU	chr22:20073516-20073723(+)$1	207	98	116	9.1328
GCGGCGCGCGGGGUCGUC	chr19:813520-813749(+)$1	229	33	51	8.5213
CUCUCUUUGAGCAGGAGC	chr7:150935651-150935924(+)$1	273	81	99	7.8595
CGGCGGCCGGAUGCCCCG	chr9:101558279-101558523(-)$1	244	176	194	8.6887
CAGUGGUGCAGAGGUAAU	chr22:20073532-20073758(+)$1	226	82	100	9.1328
GCUGUUUGUACGAGACGG	chr3:49050518-49050775(+)$1	257	227	245	9.4886
CCCAAAGAGAGAUUUGGG	chr22:20074054-20074287(+)$1	233	192	210	9.2485
CGCCGGCAGUUACUGGUG	chr9:139564511-139564722(+)$1	211	164	182	9.2485
GCCUGGGGACUUCCCGGC	chr12:62996797-62997070(+)$1	273	5	23	10.0618
CAGUGGUGCAGAGGUAAU	chr22:20073462-20073716(+)$1	254	152	170	9.1328
CUGCUUUUCCUGAGUCAG	chr8:41513164-41513391(-)$1	227	0	18	7.0024
GGCCGGUGCUGGGCCGGC	chr16:1821310-1821567(-)$1	257	109	127	9.4886
AGCCGGGACCCCCUCGGC	chr19:18112274-18112507(+)$1	233	138	156	9.8239
CCGCCGGCAGUUACUGGU	chr9:139564643-139564880(+)$1	237	31	49	8.9252
CAGGCAGUGGACAUUGCC	chr9:139564680-139564892(+)$1	212	140	158	6.5189
CUGGCGGAGGAGCUGCCG	chr5:154135498-154135746(+)$1	248	120	138	9.4886
CAGCUUCGCGCUGGAGCU	chr19:18111975-18112272(+)$1	297	168	186	10.9261
AGCCGCAACCACUACGGC	chr9:101558330-101558587(-)$1	257	129	147	6.3934
CCCAAAGAGAGAUUUGGG	chr22:20074087-20074313(+)$1	226	159	177	9.2485
AUGAUGACCAUUAUCAAU	chr17:38559070-38559332(-)$1	262	35	53	6.8397
UCUGUUUGCCAUGGCAGA	chr17:30800858-30801064(+)$1	206	154	172	9.2485
CUGGUUGCCCCUUAACCA	chrX:53581764-53582010(-)$1	246	87	105	11.0088
UGAGCUUUACCGAGAGCU	chr22:20073835-20074067(+)$1	232	15	33	6.5189
CAGUGGUGCAGAGGUAAU	chr22:20073440-20073661(+)$1	221	174	192	9.1328
cugcgggcgguauccggg	chr9:101558651-101558910(-)$1	259	62	80	7.2731
CCCGGAGGAAGGCGUCGC	chr5:154135214-154135449(+)$1	235	6	24	9.7127
CGGGGCCCCUUCCGGCCC	chr1:248020672-248020920(+)$1	248	56	74	6.4325
CUGGUUUAUUUAAAGCUA	chr5:179046277-179046530(-)$1	253	31	49	7.6527
GCUUGUUGGGGUGACAGG	chr19:46142015-46142254(-)$1	239	189	207	9.4886
UUAUCGGUuguuccugaa	chr5:31515522-31515791(-)$1	269	130	148	9.2106
UUCUCGAUCAUCUGAGGA	chr16:28877662-28877918(+)$1	256	118	136	9.2485
UGGAGUAUGCAGUGCUCG	chr22:20073993-20074254(+)$1	261	73	91	7.2151
GCCCGGGACGCGCCGGGC	chr19:2270306-2270559(+)$1	253	140	158	9.2485
UCUGUUUGCCAUGGCAGA	chr17:30800846-30801058(+)$1	212	166	184	9.2485
CAGCUUCGCGCUGGAGCU	chr19:18112126-18112390(+)$1	264	17	35	10.9261
CGGUCCCUCCCUGAGACU	chr17:80211014-80211280(-)$1	266	103	121	11.3069
CUUGAGCGAGGGGCUAGA	chr1:156389923-156390193(-)$1	270	115	133	8.6757
CAGUGGUGCAGAGGUAAU	chr22:20073378-20073640(+)$1	262	236	254	9.1328
CAGUGGUGCAGAGGUAAU	chr22:20073523-20073732(+)$1	209	91	109	9.1328

#DB
((.(.((.....)).).)	chr15:65578581-65578821(-)$1	1	95	113	8.5205
(.(((.(.....).))).	chr22:20073867-20074168(+)$1	1	265	283	9.3619
((((((......))))))	chr19:46522399-46522676(+)$1	1	37	55	9.2485
(((.(((...))).))))	chr22:20073654-20073903(+)$1	1	186	204	7.2289
((((.((.....))))))	chr12:62996652-62996879(+)$1	1	93	111	7.6070
..(((((.....))))).	chr17:33966639-33966880(+)$1	1	20	38	7.9240
(((((((.....))).))	chr7:150935513-150935736(+)$1	1	199	217	7.8342
(((((((......)))))	chr9:139564627-139564843(+)$1	1	47	65	8.9252
(((((((.....))))))	chr19:917492-917733(+)$1	1	6	24	9.4886
((.((.(.....).)).)	chr22:20073593-20073819(+)$1	1	21	39	9.1328
..((((((....))))))	chr19:44096570-44096858(-)$1	1	128	146	6.5715
((.((.(.....).)).)	chr22:20073516-20073723(+)$1	1	98	116	9.1328
(((((.(...).))))))	chr19:813520-813749(+)$1	1	33	51	8.5213
(((((((.....))))).	chr7:150935651-150935924(+)$1	1	81	99	7.8595
(((.(((.....))))))	chr9:101558279-101558523(-)$1	1	176	194	8.6887
((.((.(.....).)).)	chr22:20073532-20073758(+)$1	1	82	100	9.1328
(((((((.....))))))	chr3:49050518-49050775(+)$1	1	227	245	9.4886
((((((......))))))	chr22:20074054-20074287(+)$1	1	192	210	9.2485
((((((......))))))	chr9:139564511-139564722(+)$1	1	164	182	9.2485
(((.(((.....))))))	chr12:62996797-62997070(+)$1	1	5	23	10.0618
((.((.(.....).)).)	chr22:20073462-20073716(+)$1	1	152	170	9.1328
((((((.....))).)))	chr8:41513164-41513391(-)$1	1	0	18	7.0024
(((((((.....))))))	chr16:1821310-1821567(-)$1	1	109	127	9.4886
.((((((.....))))))	chr19:18112274-18112507(+)$1	1	138	156	9.8239
(((((((......)))))	chr9:139564643-139564880(+)$1	1	31	49	8.9252
(.((((((....))))))	chr9:139564680-139564892(+)$1	1	140	158	6.5189
(((((((.....))))))	chr5:154135498-154135746(+)$1	1	120	138	9.4886
(((((((.....))))))	chr19:18111975-18112272(+)$1	1	168	186	10.9261
(((((.........))))	chr9:101558330-101558587(-)$1	1	129	147	6.3934
((((((......))))))	chr22:20074087-20074313(+)$1	1	159	177	9.2485
.((((((...))))))..	chr17:38559070-38559332(-)$1	1	35	53	6.8397
((((((......))))))	chr17:30800858-30801064(+)$1	1	154	172	9.2485
.((((((.....))))))	chrX:53581764-53582010(-)$1	1	87	105	11.0088
(.((((((....))))))	chr22:20073835-20074067(+)$1	1	15	33	6.5189
((.((.(.....).)).)	chr22:20073440-20073661(+)$1	1	174	192	9.1328
((.((((.....)))).)	chr9:101558651-101558910(-)$1	1	62	80	7.2731
(((((.(.....).))).	chr5:154135214-154135449(+)$1	1	6	24	9.7127
))(((((......)))))	chr1:248020672-248020920(+)$1	1	56	74	6.4325
(((((((.....))))).	chr5:179046277-179046530(-)$1	1	31	49	7.6527
(((((((.....))))))	chr19:46142015-46142254(-)$1	1	189	207	9.4886
(((..((.....))))))	chr5:31515522-31515791(-)$1	1	130	148	9.2106
((((((......))))))	chr16:28877662-28877918(+)$1	1	118	136	9.2485
(.((((((...)))))).	chr22:20073993-20074254(+)$1	1	73	91	7.2151
((((((......))))))	chr19:2270306-2270559(+)$1	1	140	158	9.2485
((((((......))))))	chr17:30800846-30801058(+)$1	1	166	184	9.2485
(((((((.....))))))	chr19:18112126-18112390(+)$1	1	17	35	10.9261
(((((.(.....).))))	chr17:80211014-80211280(-)$1	1	103	121	11.3069
(((.(((.....))).))	chr1:156389923-156390193(-)$1	1	115	133	8.6757
((.((.(.....).)).)	chr22:20073378-20073640(+)$1	1	236	254	9.1328
((.((.(.....).)).)	chr22:20073523-20073732(+)$1	1	91	109	9.1328

#PSSM
f : 0.36	h : 0.16	e : 0.14	g : 0.12	b : 0.08	! : 0.04	c : 0.02	: : 0.02	# : 0.02	[ : 0.02	d : 0.02	
f : 0.46	h : 0.16	g : 0.12	e : 0.10	[ : 0.08	! : 0.04	c : 0.02	d : 0.02	
f : 0.50	[ : 0.18	e : 0.14	g : 0.10	c : 0.06	h : 0.02	
f : 0.44	b : 0.14	e : 0.10	g : 0.10	[ : 0.08	c : 0.06	a : 0.02	h : 0.02	d : 0.02	! : 0.02	
f : 0.44	c : 0.16	b : 0.14	g : 0.10	e : 0.08	[ : 0.04	d : 0.02	! : 0.02	
f : 0.38	[ : 0.21	c : 0.12	g : 0.10	e : 0.08	b : 0.06	r : 0.02	d : 0.02	
a : 0.21	f : 0.21	o : 0.16	c : 0.10	g : 0.10	e : 0.08	b : 0.06	n : 0.02	r : 0.02	d : 0.02	
n : 0.62	o : 0.21	f : 0.08	l : 0.06	r : 0.02	
n : 0.62	o : 0.21	l : 0.08	m : 0.06	r : 0.02	
n : 0.62	o : 0.21	l : 0.08	m : 0.06	r : 0.02	
n : 0.62	o : 0.21	m : 0.06	c : 0.02	a : 0.02	r : 0.02	f : 0.02	l : 0.02	
n : 0.60	o : 0.21	m : 0.06	c : 0.04	f : 0.04	] : 0.02	r : 0.02	
f : 0.36	a : 0.19	c : 0.12	g : 0.10	b : 0.06	e : 0.06	o : 0.06	r : 0.02	d : 0.02	
f : 0.40	] : 0.21	c : 0.10	g : 0.10	e : 0.08	b : 0.06	r : 0.02	d : 0.02	
f : 0.48	b : 0.14	c : 0.12	e : 0.10	g : 0.10	] : 0.04	d : 0.02	
f : 0.50	b : 0.14	e : 0.12	g : 0.10	c : 0.06	] : 0.04	a : 0.02	d : 0.02	
f : 0.48	] : 0.18	e : 0.14	g : 0.10	c : 0.06	h : 0.02	3 : 0.02	
f : 0.48	h : 0.16	e : 0.10	g : 0.10	3 : 0.06	2 : 0.04	] : 0.04	c : 0.02	

#score	436.8297250671223
#seq	50
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_CDS_m3_run2.txt

#BEAR
!!abbqqqqqqqqbb]a2	chr11:62298795-62299025(-)$1	230	180	198	11.8305
b[cccqqqqqqqqcccbb	chr20:60962839-60963064(+)$1	225	1	19	12.1555
eeeeeqqqqqqqqeeeee	chr12:21791186-21791433(-)$1	247	148	166	13.7441
gggggqqqqqqqqggggg	chr4:39460409-39460616(-)$1	207	13	31	12.8750
eeeeeqqqqqqqqeeeee	chr21:33040723-33040989(+)$1	266	52	70	13.7441
[ddddqqqqqqqqdddd]	chr19:36145438-36145672(+)$1	234	45	63	13.7742
eeeeeqqqqqqqqeeeee	chr8:56986518-56986722(-)$1	204	176	194	13.7441
!cccrrrrrrrrrcccdd	chr2:98263714-98263961(+)$1	247	139	157	8.0030
eddddqqqqqqqqdddd:	chr11:62284754-62284997(-)$1	243	67	85	12.6849
ddddrrrrrrrrrdddd]	chr16:88709610-88709920(-)$1	310	72	90	8.2413
:ddddqqqqqqqqdddd:	chr8:11696008-11696249(+)$1	241	204	222	11.6005
#cccrrrrrrrrrccc44	chr11:5275492-5275739(-)$1	247	125	143	7.7855
ggggrrrrrrrrrggggg	chr19:36149395-36149616(+)$1	221	76	94	7.7021
ddcccqqqqqqqqccc]d	chr2:55459842-55460064(+)$1	222	6	24	12.9656
eeeeeqqqqqqqqeeeee	chr12:57031939-57032210(-)$1	271	1	19	13.7441
[ddddqqqqqqqqdddd]	chr11:63743619-63743889(+)$1	270	30	48	13.7742
!ddddqqqqqqqqdddd2	chr19:46190663-46190958(-)$1	295	35	53	13.5666
ff[bbqqqqqqqqbb]ff	chr1:24018199-24018420(+)$1	221	106	124	11.6773
fddddqqqqqqqqdddd9	chr11:62284850-62285088(-)$1	238	158	176	12.9036
ddd[aqqqqqqqqadddd	chr12:56510460-56510686(+)$1	226	17	35	13.0293
!ddddqqqqqqqqdddde	chr7:54823371-54823611(-)$1	240	20	38	13.7330
eeeeeqqqqqqqqeeeee	chr11:18428636-18428884(+)$1	248	42	60	13.7441
fffffqqqqqqqqfffff	chr5:40835182-40835423(-)$1	241	152	170	12.3935
eeeeeqqqqqqqqeeeee	chr3:197677737-197677950(+)$1	213	12	30	13.7441
[ddddqqqqqqqqddddg	chr11:75111676-75111904(+)$1	228	37	55	13.6801
fffffqqqqqqqqfffff	chr15:66797024-66797272(-)$1	248	210	228	12.3935
d[cccqqqqqqqqccc22	chr11:62295148-62295394(-)$1	246	172	190	12.6676
gggggqqqqqqqqggggg	chr11:5269422-5269694(-)$1	272	126	144	12.8750
eeeeeqqqqqqqqeeeee	chr7:99690351-99690706(-)$1	355	63	81	13.7441
[ddddqqqqqqqqdddd]	chr3:37366554-37366861(+)$1	307	59	77	13.7742
!ddddqqqqqqqqdddd]	chr11:5274406-5274688(-)$1	282	216	234	13.7649
gggggqqqqqqqqggggg	chr1:165624532-165624788(+)$1	256	184	202	12.8750
fffffqqqqqqqqfffff	chr15:66795761-66795968(-)$1	207	153	171	12.3935
eeeeeqqqqqqqqeeeee	chr10:71151859-71152122(+)$1	263	181	199	13.7441
eeeeeqqqqqqqqeeeee	chr2:98263442-98263704(+)$1	262	57	75	13.7441
eeeeeqqqqqqqqeeeee	chr5:132203079-132203289(+)$1	210	84	102	13.7441
"ddddqqqqqqqqdddd5	chr11:62294489-62294762(-)$1	273	54	72	12.8109
b[cccqqqqqqqqccc]b	chr11:5290691-5290970(-)$1	279	50	68	12.4583
eeeeeqqqqqqqqeeeee	chr3:197677929-197678132(+)$1	203	166	184	13.7441
eeeerrrrrrrrreeeee	chr5:85916384-85916670(+)$1	286	83	101	8.4604
fffffqqqqqqqqfffff	chr11:5289673-5289907(-)$1	234	157	175	12.3935
gggggqqqqqqqqggggg	chr11:5269494-5269750(-)$1	256	182	200	12.8750
fffffqqqqqqqqfffff	chr12:96259679-96260001(+)$1	322	7	25	12.3935
ddddaqqqqqqqqa]ddd	chr11:67353784-67354049(+)$1	265	100	118	12.9722
cccccqqqqqqqqccc22	chr8:125561925-125562192(+)$1	267	168	186	12.6370
eeeeeqqqqqqqqeeeee	chr11:62293174-62293423(-)$1	249	129	147	13.7441
[ddddrrrrrrrrrdddd	chr15:44086012-44086258(+)$1	246	74	92	8.2537
[ddddrrrrrrrrrdddd	chrX:55035398-55035727(-)$1	329	265	283	8.2537
g[cccqqqqqqqqcccgg	chr11:5290583-5290801(-)$1	218	155	173	13.1505
!!cccqqqqqqqqccccc	chr2:176042879-176043131(-)$1	252	114	132	13.1627
eeeeeqqqqqqqqeeeee	chr3:197677932-197678193(+)$1	261	163	181	13.7441
fffffqqqqqqqqfffff	chr3:53259588-53259952(-)$1	364	160	178	12.3935
dd[bbqqqqqqqqbb]dd	chr11:812698-812942(+)$1	244	12	30	11.9049
"""bbqqqqqqqqbb444	chr14:50050237-50050494(-)$1	257	138	156	11.6105

#otherMatches

#Seq PSSM
GGCCAGAAUUUGAUGUGA	chr11:62298795-62299025(-)$1	230	180	198	11.8305
GAGGAUUGGUGUUUCCCA	chr20:60962839-60963064(+)$1	225	1	19	12.1555
UAAGUGAAAGGGAACUUG	chr12:21791186-21791433(-)$1	247	148	166	13.7441
CGUCGCGCACUCAUGACG	chr4:39460409-39460616(-)$1	207	13	31	12.8750
UUUUACAGGUCCAUGAAA	chr21:33040723-33040989(+)$1	266	52	70	13.7441
UGUCAGAAGGCAAUGACC	chr19:36145438-36145672(+)$1	234	45	63	13.7742
UGUAGAAGGUGGACUGCA	chr8:56986518-56986722(-)$1	204	176	194	13.7441
AGACCCUAAUUUAGUCCC	chr2:98263714-98263961(+)$1	247	139	157	8.0030
UGGAAAAGUAACAUUCCC	chr11:62284754-62284997(-)$1	243	67	85	12.6849
CAGCGAGGAGGAGGCUGC	chr16:88709610-88709920(-)$1	310	72	90	8.2413
ACUUUAAUCCCUAAAAGA	chr8:11696008-11696249(+)$1	241	204	222	11.6005
GCCAUAAAGCACCUGGAU	chr11:5275492-5275739(-)$1	247	125	143	7.7855
GGGAAUAACACUGUCUUU	chr19:36149395-36149616(+)$1	221	76	94	7.7021
GUGUCUGCACUUCGGCUG	chr2:55459842-55460064(+)$1	222	6	24	12.9656
AGGUGAAUAUGACCAUCU	chr12:57031939-57032210(-)$1	271	1	19	13.7441
AGGGGAAUACUGACUCCG	chr11:63743619-63743889(+)$1	270	30	48	13.7742
AGGGCAAGAAGAAGUCCA	chr19:46190663-46190958(-)$1	295	35	53	13.5666
UCUCCAUCAUGGCGGUGA	chr1:24018199-24018420(+)$1	221	106	124	11.6773
UGGAAAAGUAACAUUCCC	chr11:62284850-62285088(-)$1	238	158	176	12.9036
UGUACAAUCCAUAGACAU	chr12:56510460-56510686(+)$1	226	17	35	13.0293
CCUGUUUUUAAAUGCAGA	chr7:54823371-54823611(-)$1	240	20	38	13.7330
AAGGAUGAUGUCUUCCUU	chr11:18428636-18428884(+)$1	248	42	60	13.7441
GUGGUGUUUGUGAAUCGC	chr5:40835182-40835423(-)$1	241	152	170	12.3935
ACGAGGUGGGAAACUUGU	chr3:197677737-197677950(+)$1	213	12	30	13.7441
UGAACUUUGCUUUGUUUG	chr11:75111676-75111904(+)$1	228	37	55	13.6801
GGUUCGGAGCAUAGAAUC	chr15:66797024-66797272(-)$1	248	210	228	12.3935
CCCAAAGUGGACAUUGAU	chr11:62295148-62295394(-)$1	246	172	190	12.6676
AGCUUUCAAGGAUAGGCU	chr11:5269422-5269694(-)$1	272	126	144	12.8750
CCGCCCAGUUCCAGGCGG	chr7:99690351-99690706(-)$1	355	63	81	13.7441
GAUCCUCCUAUUUGGGUG	chr3:37366554-37366861(+)$1	307	59	77	13.7742
GGCUUUAUUCUGCAAGCA	chr11:5274406-5274688(-)$1	282	216	234	13.7649
CAGUGGACCCAAAUGCUG	chr1:165624532-165624788(+)$1	256	184	202	12.8750
GCAAAAAUGUCACUUUGC	chr15:66795761-66795968(-)$1	207	153	171	12.3935
UUCCCUAAAUGCUGGGAA	chr10:71151859-71152122(+)$1	263	181	199	13.7441
AGCGUCAUAAUUCACGUU	chr2:98263442-98263704(+)$1	262	57	75	13.7441
CUCUUAAUUUUUAAAGAG	chr5:132203079-132203289(+)$1	210	84	102	13.7441
ACUUGAAGAGCCCCAAGG	chr11:62294489-62294762(-)$1	273	54	72	12.8109
GUGUCAUUUCAUAGACUC	chr11:5290691-5290970(-)$1	279	50	68	12.4583
UCUUCUUAAAAUUGAAGG	chr3:197677929-197678132(+)$1	203	166	184	13.7441
CUGUUUUUAUUUUGCAGA	chr5:85916384-85916670(+)$1	286	83	101	8.4604
GCAGAAGCUGGUGUCUGC	chr11:5289673-5289907(-)$1	234	157	175	12.3935
AGCUUUCAAGGAUAGGCU	chr11:5269494-5269750(-)$1	256	182	200	12.8750
aauauaguauucaguauu	chr12:96259679-96260001(+)$1	322	7	25	12.3935
UGGACUUGCUGCUGAUCC	chr11:67353784-67354049(+)$1	265	100	118	12.9722
GUGGUAUAUUGUGACCAG	chr8:125561925-125562192(+)$1	267	168	186	12.6370
AGGUCCUGAAGUUGACCU	chr11:62293174-62293423(-)$1	249	129	147	13.7441
UUUGCCCUGAGUCUGCAG	chr15:44086012-44086258(+)$1	246	74	92	8.2537
ACAGACAAGUGCAUUCUG	chrX:55035398-55035727(-)$1	329	265	283	8.2537
AUAUUUUGACAUUAAUUG	chr11:5290583-5290801(-)$1	218	155	173	13.1505
AACAAAUUACUGCUUGAC	chr2:176042879-176043131(-)$1	252	114	132	13.1627
UCUUCUUAAAAUUGAAGG	chr3:197677932-197678193(+)$1	261	163	181	13.7441
GGCCUCAUCACCAAGGCC	chr3:53259588-53259952(-)$1	364	160	178	12.3935
UGGCCUGGCACUUGGGCA	chr11:812698-812942(+)$1	244	12	30	11.9049
GCAUCUACUCAAUGAAAA	chr14:50050237-50050494(-)$1	257	138	156	11.6105

#DB
..(((........)).).	chr11:62298795-62299025(-)$1	1	180	198	11.8305
(.(((........)))))	chr20:60962839-60963064(+)$1	1	1	19	12.1555
(((((........)))))	chr12:21791186-21791433(-)$1	1	148	166	13.7441
(((((........)))))	chr4:39460409-39460616(-)$1	1	13	31	12.8750
(((((........)))))	chr21:33040723-33040989(+)$1	1	52	70	13.7441
.((((........)))).	chr19:36145438-36145672(+)$1	1	45	63	13.7742
(((((........)))))	chr8:56986518-56986722(-)$1	1	176	194	13.7441
.(((.........)))))	chr2:98263714-98263961(+)$1	1	139	157	8.0030
)((((........)))).	chr11:62284754-62284997(-)$1	1	67	85	12.6849
((((.........)))).	chr16:88709610-88709920(-)$1	1	72	90	8.2413
.((((........)))).	chr8:11696008-11696249(+)$1	1	204	222	11.6005
.(((.........)))..	chr11:5275492-5275739(-)$1	1	125	143	7.7855
((((.........)))))	chr19:36149395-36149616(+)$1	1	76	94	7.7021
(((((........))).)	chr2:55459842-55460064(+)$1	1	6	24	12.9656
(((((........)))))	chr12:57031939-57032210(-)$1	1	1	19	13.7441
.((((........)))).	chr11:63743619-63743889(+)$1	1	30	48	13.7742
.((((........)))).	chr19:46190663-46190958(-)$1	1	35	53	13.5666
((.((........)).))	chr1:24018199-24018420(+)$1	1	106	124	11.6773
(((((........)))).	chr11:62284850-62285088(-)$1	1	158	176	12.9036
(((.(........)))))	chr12:56510460-56510686(+)$1	1	17	35	13.0293
.((((........)))))	chr7:54823371-54823611(-)$1	1	20	38	13.7330
(((((........)))))	chr11:18428636-18428884(+)$1	1	42	60	13.7441
(((((........)))))	chr5:40835182-40835423(-)$1	1	152	170	12.3935
(((((........)))))	chr3:197677737-197677950(+)$1	1	12	30	13.7441
.((((........)))))	chr11:75111676-75111904(+)$1	1	37	55	13.6801
(((((........)))))	chr15:66797024-66797272(-)$1	1	210	228	12.3935
(.(((........)))..	chr11:62295148-62295394(-)$1	1	172	190	12.6676
(((((........)))))	chr11:5269422-5269694(-)$1	1	126	144	12.8750
(((((........)))))	chr7:99690351-99690706(-)$1	1	63	81	13.7441
.((((........)))).	chr3:37366554-37366861(+)$1	1	59	77	13.7742
.((((........)))).	chr11:5274406-5274688(-)$1	1	216	234	13.7649
(((((........)))))	chr1:165624532-165624788(+)$1	1	184	202	12.8750
(((((........)))))	chr15:66795761-66795968(-)$1	1	153	171	12.3935
(((((........)))))	chr10:71151859-71152122(+)$1	1	181	199	13.7441
(((((........)))))	chr2:98263442-98263704(+)$1	1	57	75	13.7441
(((((........)))))	chr5:132203079-132203289(+)$1	1	84	102	13.7441
.((((........)))).	chr11:62294489-62294762(-)$1	1	54	72	12.8109
(.(((........))).)	chr11:5290691-5290970(-)$1	1	50	68	12.4583
(((((........)))))	chr3:197677929-197678132(+)$1	1	166	184	13.7441
((((.........)))))	chr5:85916384-85916670(+)$1	1	83	101	8.4604
(((((........)))))	chr11:5289673-5289907(-)$1	1	157	175	12.3935
(((((........)))))	chr11:5269494-5269750(-)$1	1	182	200	12.8750
(((((........)))))	chr12:96259679-96260001(+)$1	1	7	25	12.3935
(((((........).)))	chr11:67353784-67354049(+)$1	1	100	118	12.9722
(((((........)))..	chr8:125561925-125562192(+)$1	1	168	186	12.6370
(((((........)))))	chr11:62293174-62293423(-)$1	1	129	147	13.7441
.((((.........))))	chr15:44086012-44086258(+)$1	1	74	92	8.2537
.((((.........))))	chrX:55035398-55035727(-)$1	1	265	283	8.2537
(.(((........)))))	chr11:5290583-5290801(-)$1	1	155	173	13.1505
..(((........)))))	chr2:176042879-176043131(-)$1	1	114	132	13.1627
(((((........)))))	chr3:197677932-197678193(+)$1	1	163	181	13.7441
(((((........)))))	chr3:53259588-53259952(-)$1	1	160	178	12.3935
((.((........)).))	chr11:812698-812942(+)$1	1	12	30	11.9049
...((........))...	chr14:50050237-50050494(-)$1	1	138	156	11.6105

#PSSM
e : 0.27	f : 0.14	! : 0.11	g : 0.11	[ : 0.11	d : 0.11	b : 0.03	" : 0.03	: : 0.01	# : 0.01	c : 0.01	
d : 0.33	e : 0.25	f : 0.12	g : 0.09	[ : 0.07	c : 0.05	! : 0.03	" : 0.01	
d : 0.29	e : 0.25	c : 0.16	f : 0.11	g : 0.09	[ : 0.03	a : 0.01	" : 0.01	
d : 0.27	e : 0.25	c : 0.16	f : 0.11	g : 0.09	b : 0.07	[ : 0.01	
e : 0.24	d : 0.24	c : 0.12	f : 0.11	r : 0.09	b : 0.07	g : 0.07	a : 0.03	
q : 0.87	r : 0.12	
q : 0.87	r : 0.12	
q : 0.87	r : 0.12	
q : 0.87	r : 0.12	
q : 0.87	r : 0.12	
q : 0.87	r : 0.12	
q : 0.87	r : 0.12	
q : 0.87	r : 0.12	
e : 0.25	d : 0.22	c : 0.16	f : 0.11	g : 0.09	b : 0.07	a : 0.03	r : 0.03	
d : 0.27	e : 0.25	c : 0.16	f : 0.11	g : 0.09	b : 0.07	] : 0.01	
d : 0.29	e : 0.25	c : 0.16	f : 0.11	g : 0.09	] : 0.05	4 : 0.01	
d : 0.33	e : 0.25	f : 0.12	g : 0.11	4 : 0.03	] : 0.03	2 : 0.03	a : 0.01	b : 0.01	c : 0.01	
e : 0.27	g : 0.12	d : 0.12	f : 0.12	] : 0.09	2 : 0.07	b : 0.03	: : 0.03	4 : 0.03	9 : 0.01	5 : 0.01	c : 0.01	

#score	669.5257330412979
#seq	54
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_transcript_m1_run1.txt

#BEAR
ggg[a[bb[a[bb[aooooooa]bb22a]bb]aggggggg	chr11:58346510-58346785(+)$1	275	159	199	15.2362
e[ddddbb[gggggggoooooogggggggbb333dddd]e	chr19:4034591-4034838(+)$1	247	75	115	13.8354
cc!!eeeee####ddddllldddd4444eeeee4444ccc	chr7:101563030-101563294(+)$1	264	148	188	13.7476
ccc"""ccc!!cccqqqqqqqqccc22ccc333ccc]a::	chr10:111987123-111987401(+)$1	278	91	131	11.8104
##dddd[bb[ccc!!cccmmmmccc22ccc]bbdddd333	chr17:46125640-46125927(+)$1	287	26	66	12.4753
d[==========[bbddddllldddd]bb22=========	chr22:50026808-50027104(-)$1	296	104	144	12.2519
e####ccc[ccc[cccmmmmccc]ccc]ccc333eeeee2	chr3:122807914-122808175(+)$1	261	189	229	13.0900
"dddd!!bb"""ddddoooooodddd22bb22dddd]hhh	chr16:85660234-85660503(+)$1	269	217	257	15.2678
a[ccc[ccc[ccc[acccmmmmccc333a]cccccc]ccc	chr16:11036097-11036387(-)$1	290	73	113	14.3676
b$$$$$bb"""dddd[aooooooa]dddd]bb22bb]ccc	chrX:54835511-54835757(+)$1	246	146	186	12.9426
iiii[accc!!a[bboooooobb]a22ccc22a]iiiiii	chr19:13261893-13262168(+)$1	275	145	185	17.4585
[a[bb[dddd[ddddoooooodddd]dddd]bb]a]dddd	chr17:80808033-80808333(+)$1	300	181	221	13.0732
!!a[a[============lll============22a]a22	chr7:5569794-5570034(-)$1	240	90	130	15.0145
"eeeee[ccc!!eeeeellleeeee22ccc333eeeee]d	chr21:46233814-46234120(-)$1	306	216	256	12.6846
hhhhhh!!ccc!!cccoooooocccccc]hhhhhhhhccc	chr8:101963093-101963357(-)$1	264	217	257	14.3878
gg[a!!ccc"""eeeeeooooooeeeee]ccc22a]gggg	chr16:68119237-68119562(+)$1	325	177	217	15.4053
dddggggggg!!ffffffooooooffffff333ggggggg	chr2:97559911-97560138(-)$1	227	106	146	12.0745
ff[a[accc[cccddddnnnnndddd]ccc]ccc]a]a]f	chr4:89444594-89444885(-)$1	291	75	115	12.8777
c[bb[cccccc[ccclllccc]ccc333cccbb]ccc]ee	chr3:38206951-38207254(+)$1	303	205	245	12.5570
iiii[accc!!a[bboooooobb]a22ccc22a]iiiiii	chr19:13261968-13262222(+)$1	254	70	110	17.4585
[bbccc"""ccc[aooooooa]ccc22ccc]bb]gggggg	chr17:76119033-76119332(-)$1	299	190	230	15.3380
""eeeee####a[cccooooooccc]a22eeeee333bb4	chr1:173793756-173794015(+)$1	259	162	202	16.4918
b[ccc[ccc[ccc!!cccmmmmccc]ccc]ccc22ccc]b	chr19:1168021-1168295(-)$1	274	52	92	12.8569
iiiii[dddd####bboooooobb4444dddd]iiiiiii	chr19:5052300-5052574(+)$1	274	154	194	16.4068
hggggggg$$$$$cccooooooccc4444ggggggg]hhh	chr1:233749793-233750159(+)$1	366	239	279	17.1545
c"""ccc[ccc[ccc[ammmma]cccccc]ccc333ccch	chrX:39955207-39955520(-)$1	313	149	189	13.9295
"a[ggggggg!!a[ccclllccc]a22ggggggg]a22cc	chr10:111986983-111987228(+)$1	245	179	219	14.5103
####eeeee[bb[bboooooobb]bb]eeeee333eeeee	chr12:25054647-25054919(-)$1	272	68	108	13.5527
d$$$$$==========oooooo==========ddddccc]	chr16:88548445-88548711(+)$1	266	22	62	15.7084
dd"""eeeee[cccacccmmmmccc22a]ccc]eeeee]d	chr7:1049623-1049877(-)$1	254	9	49	12.7469
adddd[iiiiiiiiiooooooiiiiiiiiidddd]accc!	chr12:121148201-121148544(+)$1	343	20	60	14.0357
[eeeeeccc####ddddllldddd4444ccc]eeeee]cc	chr16:88589009-88589283(+)$1	274	43	83	13.5033
e!!ggggggg"""cccoooooocccggggggg55555eee	chr7:65338240-65338499(+)$1	259	106	146	13.7860
ccc[dddd"""ddddoooooodddd333dddd22ccc]ff	chr4:78078349-78078664(+)$1	315	267	307	16.0046
iiiiiiii$$$$$a[aooooooa]a4444iiiiiiiii:e	chr19:1592442-1592778(-)$1	336	139	179	16.5008
=======%%%%%%cccooooooccc22=============	chr19:18548133-18548393(-)$1	260	72	112	16.3804
b[iiiiiiiii!!cccooooooccc22iiiiiiiii]bb]	chr14:102177956-102178210(-)$1	254	144	184	18.1982
:ffffff[dddd[cccooooooccc22dddd22ffffff=	chr19:2271012-2271280(+)$1	268	66	106	13.7323
G{Accc[ccc!!ddddoooooodddd]ccc]ccc:ggggg	chr16:448839-449065(+)$1	226	21	61	13.3138
ggg[a[ffffff!!bboooooobb]ffffff]aggggggg	chr9:140464697-140464989(-)$1	292	42	82	13.5744
g"""a[ccc####cccooooooccc22ccc]a22gggggg	chr6:42750025-42750280(+)$1	255	201	241	20.5797
##dddd!!a[ffffffooooooffffffa]dddd333bb2	chr19:954011-954270(+)$1	259	23	63	13.0167
a!!ccc[ccc"""cccnnnnnccc4444ccc333ccc22a	chr9:127631497-127631826(+)$1	329	196	236	15.8003
cc!!ddddbb[ddddoooooodddd]bb]dddd22ccc]d	chr19:3695982-3696333(-)$1	351	197	237	13.5587
eee####bb"""ddddoooooodddd333bb333eeeeed	chr21:46841100-46841342(+)$1	242	21	61	16.5312
###dddd[dddd[cccooooooccc22dddd]ddddgggg	chr19:2270970-2271212(+)$1	242	108	148	16.3397
ff[dddd"""a!!cccooooooccc22a4444dddd22ff	chr7:76124991-76125306(+)$1	315	240	280	17.1221
ddd"""dddd"""cccooooooccc4444dddd55555dd	chr4:714099-714349(+)$1	250	72	112	13.6148
""bb!!eeeee!!cccooooooccc22eeeee22bb]a]f	chr19:944232-944498(+)$1	266	208	248	16.7160
##a!!dddd!!a!!ddddllldddd22a22dddd22a444	chr14:50360025-50360317(+)$1	292	92	132	13.4805
ii[a[bb[bb[ccc[aooooooa]ccc]bb]bb]a]iiii	chr19:49376015-49376257(+)$1	242	61	101	15.0763
ccc[a[ccc[bbddddoooooodddd22bb]ccc]accc]	chr3:160283039-160283342(-)$1	303	151	191	15.7562

#otherMatches

#Seq PSSM
GCGAGGGGGCGGGGGGAGCAGCGCCGAGGCCGCCGCCUCC	chr11:58346510-58346785(+)$1	275	159	199	15.2362
CUUCCCCCACAGGCCCGGAGUGGGGCUUGGGCUUGGGGUG	chr19:4034591-4034838(+)$1	247	75	115	13.8354
UCAGGAGGUGAGCGCCAGGAUGGCUGGAGCCUUGAAGGGu	chr7:101563030-101563294(+)$1	264	148	188	13.7476
GGUGGAGGGAAGUUGGAGAGAGGGCGGUCUGGGGCUGGAG	chr10:111987123-111987401(+)$1	278	91	131	11.8104
GGUGUUUGCGGCGGGCGGGUUUCCGAGUGCGGUAGCAGGA	chr17:46125640-46125927(+)$1	287	26	66	12.4753
UGCUGCUGGCUCAGCGCCCUGUGGGCAGUGGGAGCCGGUG	chr22:50026808-50027104(-)$1	296	104	144	12.2519
AACCCGGAAUAAUGUACUGGUGCUUUACUCCAAAUCUGGU	chr3:122807914-122808175(+)$1	261	189	229	13.0900
UGGGACACCAUAUUUAAUGGAGUAGAGAGGCCUCCCCCCU	chr16:85660234-85660503(+)$1	269	217	257	15.2678
GGAGGGCUACGCGGCGGCCGCAGCCAUGGGUGCUGGGCCU	chr16:11036097-11036387(-)$1	290	73	113	14.3676
UGAGGAUCAGCCUCCAGGCACAACAGGGGAGAGGACGUUC	chrX:54835511-54835757(+)$1	246	146	186	12.9426
CUCAGAGAUAGCGCCUGGGCUGGGGAAAUCAUUGUGGGGU	chr19:13261893-13262168(+)$1	275	145	185	17.4585
ugugcuguUGUUGGCUGUCCUGUUGUUGGCUGUCCUGUUG	chr17:80808033-80808333(+)$1	300	181	221	13.0732
GAGGCGCGCUCCGGGGGUGCCGCUCUCGGGGCGGGGGCAA	chr7:5569794-5570034(-)$1	240	90	130	15.0145
ACUGCGAGAGGCAGGUGCGGCACCUUGCUCCCCCGCAGAG	chr21:46233814-46234120(-)$1	306	216	256	12.6846
GCGGGUGAGCCUGAGCAUAGCCGCUGGUGGCCCGCUCGGC	chr8:101963093-101963357(-)$1	264	217	257	14.3878
UCGGAACGGAACGCUCGGCGUCGCGGGCCCCGCCCGGAAA	chr16:68119237-68119562(+)$1	325	177	217	15.4053
CGUGGGGGAGCUGGGUAUGUUUGGGUACCCCUCCUCUccu	chr2:97559911-97560138(-)$1	227	106	146	12.0745
GGGAACGCGCGCGCCGCCGUCCGCGGUCGCCCGUAGGUGC	chr4:89444594-89444885(-)$1	291	75	115	12.8777
CAGGAGGCGAGGUCCGCCGGAGCUCUGAGCCCCCGCUGCU	chr3:38206951-38207254(+)$1	303	205	245	12.5570
CUCAGAGAUAGCGCCUGGGCUGGGGAAAUCAUUGUGGGGU	chr19:13261968-13262222(+)$1	254	70	110	17.4585
cagugcaaaggcccugaggugagcccagcaucuucUGGUC	chr17:76119033-76119332(-)$1	299	190	230	15.3380
CUGCGAGAUUUGAAACGCGACUGUUACUCCUUGUUUUCCG	chr1:173793756-173794015(+)$1	259	162	202	16.4918
GAUGCAGGAGCUCUCGGGGUGGCCCUGAGGUCUGGGCACC	chr19:1168021-1168295(-)$1	274	52	92	12.8569
GGUGGAAGGCAGAGCCUGGGGUGGAUGAGUCUGUCGCCCA	chr19:5052300-5052574(+)$1	274	154	194	16.4068
UGGUCUUCUCCUCGGUGGAGCUGCCCUAUGAGGACCUGCU	chr1:233749793-233750159(+)$1	366	239	279	17.1545
CGGGGAGGGCGAggcgccgcggggcccgcgcucggagccg	chrX:39955207-39955520(-)$1	313	149	189	13.9295
gggugcgcacggaggguggggCUGUGGGUGUGCGGCGAGC	chr10:111986983-111987228(+)$1	245	179	219	14.5103
UUUACUUAAUGGUGGUUUAAUUCUUCUUUAAGGAUUGCAG	chr12:25054647-25054919(-)$1	272	68	108	13.5527
gcagCUGUCAGCCUGCCUGGCCGUGGGUUGGCCUGCUCCA	chr16:88548445-88548711(+)$1	266	22	62	15.7084
GGUGAGGGUGGGCUCGGGAAGCCCCAGGCAGCGCACCCGU	chr7:1049623-1049877(-)$1	254	9	49	12.7469
cccgcUCUCCAUAGUUACCGCGCUGUGGAGGCGGCGGCCA	chr12:121148201-121148544(+)$1	343	20	60	14.0357
GUUGGGGGAAACAAGGAACAUUCUCAGGUCCGCCCGGGGA	chr16:88589009-88589283(+)$1	274	43	83	13.5033
ggcggcggGAAGAUGGCGGCUCCCGUCCUGCUAAGAGUGU	chr7:65338240-65338499(+)$1	259	106	146	13.7860
GGACCGCGAGGCCGCGGGCGGGUGGAGGCGCGUCUCCGGC	chr4:78078349-78078664(+)$1	315	267	307	16.0046
CCGGGCGCAAUGGAGCGGAAGAGGUGGGAGUGCCCGGCGC	chr19:1592442-1592778(-)$1	336	139	179	16.5008
CGGGACCAGGGGGGCUGUAGGGGGUGGGGUUCCGCGGGGC	chr19:18548133-18548393(-)$1	260	72	112	16.3804
UGUGUUUCCUCUGAGGACUUGACCUGUGAGGGGACAAGGC	chr14:102177956-102178210(-)$1	254	144	184	18.1982
AGGCUCUGCCCCGGCGGGGCUGCGUGAGGGGAAGGGGCCC	chr19:2271012-2271280(+)$1	268	66	106	13.7323
UUCCAGAGUGCCCUGCAUAGAGGCAGACACCCUGAAGCCU	chr16:448839-449065(+)$1	226	21	61	13.3138
uugacauugggcaggugaugagacagcccagagcagguuu	chr9:140464697-140464989(-)$1	292	42	82	13.5744
caggcgggcagggggcggcgaggccgggccgggggcgccu	chr6:42750025-42750280(+)$1	255	201	241	20.5797
cagagcgagacccugucccuaaauagggcagcucaaggcc	chr19:954011-954270(+)$1	259	23	63	13.0167
GCGAGGUGGACGGGCUCCUGCGGCAAUAUCCUUCCCUGAC	chr9:127631497-127631826(+)$1	329	196	236	15.8003
CCUGCCUGGAGCACAGUGUAGUGUGGUCACAGGGCGGCCG	chr19:3695982-3696333(-)$1	351	197	237	13.5587
CUUUGCCGCCCCCACCCCCAUAGGUGCUUGCUUUGAGCCC	chr21:46841100-46841342(+)$1	242	21	61	16.5312
AGGCUCUGCCCCGGCGGGGCUGCGUGAGGGGAAGGGGCCC	chr19:2270970-2271212(+)$1	242	108	148	16.3397
AGCGCAGAGGCACCAGAUUCUCUUGAGGAAAACUGCACCU	chr7:76124991-76125306(+)$1	315	240	280	17.1221
CACAAGGGAGAGCAGCAGAGUGGUUUCAGCUCCGGGAGGU	chr4:714099-714349(+)$1	250	72	112	13.6148
CUGCCACGGCCUCAGCCCCGUUGCUUCGGUCGAUGCCCCC	chr19:944232-944498(+)$1	266	208	248	16.7160
AGGAAGGCGGAGGAGCGGGAACCGCGGCGGCGCUCGCGCG	chr14:50360025-50360317(+)$1	292	92	132	13.4805
GAAUGUUUCAGUCUGCGAGGGAGGAGGGUGUGAGGGUUUG	chr19:49376015-49376257(+)$1	242	61	101	15.0763
CGGCGGCGCGGCGGGCACAGCAGCUCAGGCGGCGGCCCGG	chr3:160283039-160283342(-)$1	303	151	191	15.7562

#DB
(((.(.((.(.((.(......).))..).)).))))))))	chr11:58346510-58346785(+)$1	1	159	199	15.2362
(.((((((.(((((((......)))))))))...)))).)	chr19:4034591-4034838(+)$1	1	75	115	13.8354
((..(((((....((((...))))....)))))....)))	chr7:101563030-101563294(+)$1	1	148	188	13.7476
(((...(((..(((........)))..)))...))).)..	chr10:111987123-111987401(+)$1	1	91	131	11.8104
..((((.((.(((..(((....)))..))).))))))...	chr17:46125640-46125927(+)$1	1	26	66	12.4753
(.((((((((((.((((((...)))).))..)))))))))	chr22:50026808-50027104(-)$1	1	104	144	12.2519
(....(((.(((.(((....))).))).)))...))))).	chr3:122807914-122808175(+)$1	1	189	229	13.0900
.((((..((...((((......))))..))..)))).)))	chr16:85660234-85660503(+)$1	1	217	257	15.2678
(.(((.(((.(((.((((....)))...).)))))).)))	chr16:11036097-11036387(-)$1	1	73	113	14.3676
(.....((...((((.(......).)))).))..)).)))	chrX:54835511-54835757(+)$1	1	146	186	12.9426
((((.((((..(.((......)).)..)))..).))))))	chr19:13261893-13262168(+)$1	1	145	185	17.4585
.(.((.((((.((((......)))).)))).)).).))))	chr17:80808033-80808333(+)$1	1	181	221	13.0732
..(.(.((((((((((((...))))))))))))..).)..	chr7:5569794-5570034(-)$1	1	90	130	15.0145
.(((((.(((..(((((...)))))..)))...))))).)	chr21:46233814-46234120(-)$1	1	216	256	12.6846
((((((..(((..(((......)))))).)))))))))))	chr8:101963093-101963357(-)$1	1	217	257	14.3878
((.(..(((...(((((......))))).)))..).))))	chr16:68119237-68119562(+)$1	1	177	217	15.4053
((((((((((..((((((......))))))...)))))))	chr2:97559911-97560138(-)$1	1	106	146	12.0745
((.(.((((.(((((((.....)))).))).))).).).)	chr4:89444594-89444885(-)$1	1	75	115	12.8777
(.((.((((((.(((...))).)))...))))).))).))	chr3:38206951-38207254(+)$1	1	205	245	12.5570
((((.((((..(.((......)).)..)))..).))))))	chr19:13261968-13262222(+)$1	1	70	110	17.4585
.(((((...(((.(......).)))..))).)).))))))	chr17:76119033-76119332(-)$1	1	190	230	15.3380
..(((((....(.(((......))).)..)))))...)).	chr1:173793756-173794015(+)$1	1	162	202	16.4918
(.(((.(((.(((..(((....))).))).)))..))).)	chr19:1168021-1168295(-)$1	1	52	92	12.8569
(((((.((((....((......))....)))).)))))))	chr19:5052300-5052574(+)$1	1	154	194	16.4068
((((((((.....(((......)))....))))))).)))	chr1:233749793-233750159(+)$1	1	239	279	17.1545
(...(((.(((.(((.(....).)))))).)))...)))(	chrX:39955207-39955520(-)$1	1	149	189	13.9295
.(.(((((((..(.(((...))).)..))))))).)..))	chr10:111986983-111987228(+)$1	1	179	219	14.5103
....(((((.((.((......)).)).)))))...)))))	chr12:25054647-25054919(-)$1	1	68	108	13.5527
(.....((((((((((......))))))))))))))))).	chr16:88548445-88548711(+)$1	1	22	62	15.7084
((...(((((.(((((((....)))..).))).))))).)	chr7:1049623-1049877(-)$1	1	9	49	12.7469
(((((.(((((((((......))))))))))))).)(((.	chr12:121148201-121148544(+)$1	1	20	60	14.0357
.((((((((....((((...))))....))).))))).))	chr16:88589009-88589283(+)$1	1	43	83	13.5033
(..(((((((...(((......)))))))))).....)))	chr7:65338240-65338499(+)$1	1	106	146	13.7860
(((.((((...((((......))))...))))..))).))	chr4:78078349-78078664(+)$1	1	267	307	16.0046
((((((((.....(.(......).)....))))))))).(	chr19:1592442-1592778(-)$1	1	139	179	16.5008
(((((((......(((......)))..)))))))))))))	chr19:18548133-18548393(-)$1	1	72	112	16.3804
(.(((((((((..(((......)))..))))))))).)).	chr14:102177956-102178210(-)$1	1	144	184	18.1982
.((((((.((((.(((......)))..))))..))))))(	chr19:2271012-2271280(+)$1	1	66	106	13.7323
(.((((.(((..((((......)))).))).))).(((((	chr16:448839-449065(+)$1	1	21	61	13.3138
(((.(.((((((..((......)).)))))).))))))))	chr9:140464697-140464989(-)$1	1	42	82	13.5744
(...(.(((....(((......)))..))).)..))))))	chr6:42750025-42750280(+)$1	1	201	241	20.5797
..((((..(.((((((......))))))).))))...)).	chr19:954011-954270(+)$1	1	23	63	13.0167
(..(((.(((...(((.....)))....)))...)))..)	chr9:127631497-127631826(+)$1	1	196	236	15.8003
((..((((((.((((......)))).)).))))..))).)	chr19:3695982-3696333(-)$1	1	197	237	13.5587
(((....((...((((......))))...))...)))))(	chr21:46841100-46841342(+)$1	1	21	61	16.5312
...((((.((((.(((......)))..)))).))))))))	chr19:2270970-2271212(+)$1	1	108	148	16.3397
((.((((...(..(((......)))..)....))))..))	chr7:76124991-76125306(+)$1	1	240	280	17.1221
(((...((((...(((......)))....)))).....))	chr4:714099-714349(+)$1	1	72	112	13.6148
..((..(((((..(((......)))..)))))..)).).)	chr19:944232-944498(+)$1	1	208	248	16.7160
..(..((((..(..((((...))))..)..))))..)...	chr14:50360025-50360317(+)$1	1	92	132	13.4805
((.(.((.((.(((.(......).))).)).)).).))))	chr19:49376015-49376257(+)$1	1	61	101	15.0763
(((.(.(((.((((((......))))..)).))).)))).	chr3:160283039-160283342(-)$1	1	151	191	15.7562

#PSSM
c : 0.13	# : 0.09	d : 0.09	" : 0.09	i : 0.09	g : 0.07	e : 0.07	a : 0.05	b : 0.05	[ : 0.05	h : 0.03	f : 0.03	! : 0.01	= : 0.01	: : 0.01	G : 0.01	
[ : 0.11	# : 0.11	c : 0.09	d : 0.09	i : 0.09	g : 0.07	" : 0.07	! : 0.05	e : 0.05	f : 0.05	$ : 0.03	a : 0.03	h : 0.01	b : 0.01	= : 0.01	{ : 0.01	
d : 0.13	[ : 0.11	c : 0.09	i : 0.09	! : 0.07	e : 0.07	g : 0.05	# : 0.05	b : 0.05	" : 0.05	= : 0.03	$ : 0.03	a : 0.03	h : 0.01	f : 0.01	A : 0.01	
d : 0.13	[ : 0.09	" : 0.09	c : 0.09	i : 0.09	g : 0.07	! : 0.05	# : 0.05	b : 0.05	e : 0.05	a : 0.05	= : 0.03	$ : 0.03	h : 0.01	f : 0.01	
d : 0.17	c : 0.11	a : 0.09	e : 0.09	[ : 0.09	g : 0.07	" : 0.05	! : 0.05	i : 0.05	= : 0.03	# : 0.03	$ : 0.03	b : 0.01	h : 0.01	f : 0.01	
[ : 0.19	d : 0.15	e : 0.11	c : 0.11	g : 0.07	! : 0.05	a : 0.05	" : 0.03	= : 0.03	$ : 0.03	i : 0.03	h : 0.01	f : 0.01	# : 0.01	b : 0.01	
c : 0.24	d : 0.15	e : 0.09	b : 0.07	[ : 0.07	= : 0.07	g : 0.07	! : 0.05	i : 0.05	f : 0.03	" : 0.01	# : 0.01	
c : 0.28	b : 0.11	d : 0.11	e : 0.07	g : 0.07	[ : 0.07	= : 0.05	i : 0.05	! : 0.03	" : 0.03	# : 0.01	% : 0.01	f : 0.01	
c : 0.30	d : 0.11	b : 0.09	e : 0.07	" : 0.07	[ : 0.05	= : 0.05	g : 0.05	$ : 0.03	i : 0.03	# : 0.01	% : 0.01	f : 0.01	a : 0.01	
c : 0.15	[ : 0.13	" : 0.11	d : 0.09	g : 0.07	# : 0.07	! : 0.07	= : 0.05	$ : 0.03	e : 0.03	i : 0.03	b : 0.03	a : 0.01	% : 0.01	f : 0.01	
c : 0.17	! : 0.15	" : 0.15	[ : 0.09	# : 0.09	= : 0.05	$ : 0.03	b : 0.03	i : 0.03	d : 0.03	f : 0.03	g : 0.01	% : 0.01	a : 0.01	e : 0.01	
c : 0.17	! : 0.15	" : 0.11	d : 0.11	# : 0.07	a : 0.07	b : 0.05	= : 0.05	[ : 0.03	$ : 0.03	f : 0.03	g : 0.01	i : 0.01	% : 0.01	
c : 0.17	[ : 0.17	d : 0.15	! : 0.11	# : 0.07	" : 0.05	= : 0.03	e : 0.03	f : 0.03	$ : 0.03	b : 0.01	g : 0.01	a : 0.01	i : 0.01	% : 0.01	
c : 0.36	d : 0.21	! : 0.07	b : 0.07	[ : 0.05	= : 0.03	e : 0.03	f : 0.03	a : 0.03	g : 0.01	# : 0.01	i : 0.01	
c : 0.32	d : 0.23	b : 0.11	a : 0.05	! : 0.03	= : 0.03	e : 0.03	f : 0.03	[ : 0.03	g : 0.01	q : 0.01	o : 0.01	i : 0.01	
c : 0.36	o : 0.17	d : 0.17	[ : 0.03	= : 0.03	e : 0.03	f : 0.03	b : 0.03	a : 0.03	g : 0.01	q : 0.01	l : 0.01	
o : 0.61	d : 0.09	c : 0.09	a : 0.03	e : 0.03	q : 0.01	m : 0.01	= : 0.01	f : 0.01	l : 0.01	n : 0.01	
o : 0.65	l : 0.09	c : 0.07	d : 0.03	m : 0.03	n : 0.03	q : 0.01	= : 0.01	f : 0.01	
o : 0.67	l : 0.11	m : 0.11	n : 0.03	q : 0.01	d : 0.01	c : 0.01	
o : 0.67	l : 0.13	m : 0.11	n : 0.03	q : 0.01	c : 0.01	
o : 0.65	m : 0.09	l : 0.05	c : 0.05	d : 0.03	n : 0.03	q : 0.01	e : 0.01	a : 0.01	
o : 0.49	d : 0.11	m : 0.07	c : 0.05	b : 0.05	a : 0.03	] : 0.03	q : 0.01	l : 0.01	= : 0.01	e : 0.01	n : 0.01	i : 0.01	
c : 0.42	d : 0.23	b : 0.09	o : 0.05	] : 0.03	= : 0.03	a : 0.03	g : 0.01	e : 0.01	i : 0.01	f : 0.01	
c : 0.40	d : 0.23	] : 0.13	b : 0.05	= : 0.03	e : 0.03	g : 0.01	a : 0.01	o : 0.01	i : 0.01	f : 0.01	
c : 0.42	d : 0.19	4 : 0.07	a : 0.07	b : 0.03	] : 0.03	= : 0.03	e : 0.03	f : 0.03	g : 0.01	i : 0.01	
2 : 0.32	4 : 0.13	d : 0.13	c : 0.07	] : 0.07	3 : 0.05	f : 0.05	g : 0.03	= : 0.03	e : 0.01	b : 0.01	i : 0.01	
2 : 0.36	4 : 0.13	c : 0.09	] : 0.07	3 : 0.07	f : 0.05	g : 0.03	d : 0.03	= : 0.03	e : 0.01	a : 0.01	i : 0.01	b : 0.01	
c : 0.23	4 : 0.13	a : 0.07	3 : 0.07	d : 0.07	g : 0.05	2 : 0.05	= : 0.05	e : 0.05	f : 0.05	b : 0.03	] : 0.03	i : 0.03	
c : 0.28	d : 0.11	] : 0.09	b : 0.07	4 : 0.07	g : 0.05	e : 0.05	= : 0.05	a : 0.03	f : 0.03	2 : 0.03	i : 0.03	3 : 0.01	
c : 0.28	d : 0.13	b : 0.11	] : 0.09	e : 0.07	= : 0.05	g : 0.05	i : 0.05	2 : 0.03	f : 0.03	h : 0.01	4 : 0.01	
c : 0.17	d : 0.17	] : 0.15	b : 0.07	e : 0.07	2 : 0.07	3 : 0.05	= : 0.05	g : 0.05	i : 0.03	h : 0.01	f : 0.01	4 : 0.01	
c : 0.15	3 : 0.13	d : 0.13	b : 0.11	] : 0.07	e : 0.07	= : 0.07	2 : 0.07	g : 0.05	i : 0.03	h : 0.01	a : 0.01	4 : 0.01	
d : 0.17	3 : 0.15	c : 0.11	2 : 0.11	b : 0.09	a : 0.07	e : 0.05	= : 0.05	] : 0.03	g : 0.03	i : 0.03	h : 0.01	5 : 0.01	
d : 0.15	2 : 0.15	3 : 0.11	] : 0.11	g : 0.09	c : 0.09	e : 0.07	i : 0.05	= : 0.03	5 : 0.03	4 : 0.01	h : 0.01	f : 0.01	
g : 0.11	d : 0.11	c : 0.09	e : 0.09	i : 0.09	2 : 0.07	] : 0.07	3 : 0.07	a : 0.05	= : 0.03	b : 0.03	5 : 0.03	4 : 0.01	h : 0.01	f : 0.01	: : 0.01	
g : 0.13	c : 0.13	d : 0.11	e : 0.11	i : 0.09	a : 0.09	] : 0.05	3 : 0.05	= : 0.03	b : 0.03	5 : 0.03	4 : 0.01	h : 0.01	f : 0.01	2 : 0.01	
] : 0.17	c : 0.17	g : 0.15	e : 0.11	i : 0.09	d : 0.05	= : 0.03	3 : 0.03	2 : 0.03	5 : 0.03	4 : 0.01	h : 0.01	f : 0.01	a : 0.01	
c : 0.19	g : 0.15	e : 0.11	i : 0.09	a : 0.07	] : 0.05	b : 0.05	2 : 0.05	d : 0.03	= : 0.03	h : 0.03	3 : 0.01	f : 0.01	5 : 0.01	4 : 0.01	
c : 0.19	g : 0.15	] : 0.13	e : 0.09	i : 0.07	b : 0.05	f : 0.05	: : 0.03	= : 0.03	h : 0.03	d : 0.03	2 : 0.03	3 : 0.01	4 : 0.01	
g : 0.15	c : 0.11	d : 0.11	e : 0.09	i : 0.07	f : 0.07	= : 0.05	2 : 0.05	h : 0.05	] : 0.05	4 : 0.03	: : 0.01	3 : 0.01	b : 0.01	! : 0.01	a : 0.01	

#score	763.3370625374295
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_UTR_m2_run1.txt

#BEAR
gggggggaqqqqqqqqa]ggggggg3	chr14:77935458-77935781(+)$1	323	87	113	16.9192
hhhhhcccqqqqqqqqccc333hhhh	chr12:8071843-8072103(-)$1	260	198	224	15.7078
ffff!!bbqqqqqqqqbb22ffffff	chr7:103112422-103112651(-)$1	229	78	104	14.8809
ccc[ddddqqqqqqqqdddd]ccc:e	chr1:44443555-44443801(+)$1	246	13	39	15.0423
beeeeebbqqqqqqqqbb]eeeee33	chrX:23803926-23804181(+)$1	255	57	83	15.3592
a[dddd[aqqqqqqqqa]dddda]a]	chr3:184052702-184053000(+)$1	298	56	82	15.6127
dddd[cccqqqqqqqqccc22dddd3	chr7:2704195-2704444(+)$1	249	135	161	15.8773
ccc[ddddqqqqqqqqddddccc333	chr20:62565892-62566145(+)$1	253	47	73	16.2113
========qqqqqqqq==========	chr1:11979783-11980073(-)$1	290	85	111	17.5503
iiiiiiiiqqqqqqqqiiiiiiiii:	chr11:1774089-1774359(-)$1	270	183	209	16.3194
b!!a[cccqqqqqqqqccca22bb]b	chr11:840146-840416(-)$1	270	11	37	16.0318
fffff[bbqqqqqqqqbbffffff]c	chr17:76168166-76168426(+)$1	260	210	236	14.8116
[eeeeebbqqqqqqqqbb]eeeeecc	chr17:55198240-55198472(+)$1	232	197	223	15.2202
+ccc[cccqqqqqqqqccc]cccddd	chr16:450305-450612(+)$1	307	67	93	15.5398
gg!!ddddqqqqqqqqdddd]ggggg	chr1:26144323-26144592(+)$1	269	209	235	16.4401
ddd[ddddqqqqqqqqdddd333ddd	chr5:52782113-52782354(+)$1	241	10	36	15.6466
hhhh[cccqqqqqqqqccchhhhhhh	chr1:183522882-183523140(+)$1	258	84	110	15.0017
b!!eeeeeqqqqqqqqeeeee22bb]	chr6:29913127-29913368(+)$1	241	162	188	15.0568
ddd"""bbqqqqqqqqbb333dddd3	chr2:10567480-10567764(+)$1	284	198	224	15.6176
:cccddddqqqqqqqqdddd]ccc:b	chr2:85808776-85809085(+)$1	309	137	163	13.7790
eeee[cccqqqqqqqqccc22eeeee	chr3:48481590-48481823(+)$1	233	120	146	15.9634
bbffffffqqqqqqqqffffff]bb]	chr14:95090164-95090457(+)$1	293	54	80	14.1233
$gggggggqqqqqqqqggggggg444	chr19:12810560-12810836(-)$1	276	39	65	16.4165
"ccc[cccqqqqqqqqccc]ccc333	chr2:85835430-85835723(-)$1	293	182	208	16.9964
d####cccqqqqqqqqccc22ddddb	chr3:33038264-33038605(-)$1	341	55	81	15.7270
========qqqqqqqq==========	chr20:30194062-30194294(+)$1	232	86	112	17.5503
ddd[bb[aqqqqqqqqabb]dddd]f	chr4:83274974-83275227(-)$1	253	187	213	14.5150
a####cccqqqqqqqqccc333aggg	chr17:76170324-76170607(-)$1	283	113	139	17.0028
iiiiiiiiqqqqqqqqiiiiiiiii]	chr19:972586-972837(+)$1	251	110	136	17.2257
eebb[cccqqqqqqqqccc]bb333e	chr6:31807266-31807549(+)$1	283	146	172	15.5402
========qqqqqqqq==========	chr17:56168132-56168394(+)$1	262	67	93	17.5503
iiiiiiiiqqqqqqqqiiiiiiiii2	chr3:32938483-32938733(+)$1	250	209	235	17.0575
d[a[ddddqqqqqqqqdddda]dddd	chr17:40466497-40466768(-)$1	271	86	112	15.3304
ggggg!!aqqqqqqqqaggggggg:b	chr10:75531192-75531471(+)$1	279	78	104	15.8511
eeeee[bbqqqqqqqqbb]eeeee44	chr20:23614347-23614566(-)$1	219	34	60	15.4136
====ddddqqqqqqqqdddd333===	chr1:19630414-19630715(-)$1	301	144	170	16.8867
iia!!cccqqqqqqqqccc22a]iii	chr15:79214421-79214647(-)$1	226	94	120	17.1180
fff[ddddqqqqqqqqdddd333fff	chr16:58554985-58555294(-)$1	309	12	38	15.9300
hddddcccqqqqqqqqccc]dddd55	chr20:35869834-35870058(+)$1	224	178	204	14.2671
fff[ddddqqqqqqqqdddd22ffff	chr14:70238515-70238770(+)$1	255	77	103	15.3767
e$$$$$bbqqqqqqqqbbeeeeebb4	chr1:990353-990607(+)$1	254	214	240	14.1249
iiiiiiiiqqqqqqqqiiiiiiiii:	chr11:1774024-1774289(-)$1	265	113	139	16.3194
eeee!!bbqqqqqqqqbb]eeeeebb	chr1:155106725-155106946(+)$1	221	19	45	15.2031
bb[eeeeeqqqqqqqqeeeee22bb]	chr2:220403939-220404164(-)$1	225	158	184	14.6919
ffff[cccqqqqqqqqccc]ffffff	chr17:53469945-53470183(-)$1	238	32	58	15.9058
##ffffffqqqqqqqqffffff333a	chr17:80015705-80016016(-)$1	311	231	257	14.8717
iiiiiiiiqqqqqqqqiiiiiiiiiD	chr12:56553755-56554032(+)$1	277	14	40	15.9991
ddd[ddddqqqqqqqqdddddddddd	chr13:48650710-48651113(-)$1	403	247	273	14.7299
fgggggggqqqqqqqqggggggg666	chr15:64448138-64448366(-)$1	228	183	209	15.3717
ffff[cccqqqqqqqqcccffffff]	chr10:73576421-73576678(-)$1	257	72	98	15.8989
ggggg!!aqqqqqqqqa22ggggggg	chr6:35801268-35801561(-)$1	293	180	206	16.2350
hhhhddddqqqqqqqqdddd22hhhh	chr17:19481208-19481463(+)$1	255	84	110	14.6435
cgggggggqqqqqqqqggggggg:::	chr18:77662369-77662646(-)$1	277	80	106	13.9909
g!!eeeeeqqqqqqqqeeeee>>>>>	chr14:34903960-34904311(-)$1	351	140	166	14.6495
hh"""cccqqqqqqqqccc333hhhh	chr6:41756881-41757143(+)$1	262	183	209	16.2708
ff[eeeeeqqqqqqqqeeeee]ffff	chr16:88781810-88782128(-)$1	318	38	64	14.9312
[gggggggqqqqqqqqggggggg]bb	chr6:31605338-31605592(+)$1	254	169	195	16.3288
========qqqqqqqq==========	chr12:56553270-56553533(+)$1	263	49	75	17.5503
!!dddd[aqqqqqqqqa]dddd22a2	chr19:33791740-33791981(-)$1	241	132	158	15.2896
gg[bb[bbqqqqqqqqbb]bb22ggg	chr11:2966133-2966381(-)$1	248	193	219	14.7658
eeee!!bbqqqqqqqqbb333eeeee	chr1:31404287-31404612(-)$1	325	219	245	15.6784
cc[ddddaqqqqqqqqa]dddd]ccc	chr9:95883933-95884210(-)$1	277	122	148	15.6787
HgggggggqqqqqqqqgggggggGGG	chr1:225589287-225589560(-)$1	273	183	209	14.2569

#otherMatches

#Seq PSSM
UUGAGGGCAUUAAACAGACCUUUGGC	chr14:77935458-77935781(+)$1	323	87	113	16.9192
AGAUUGUGAAUAUUUCCAUAUGGAUU	chr12:8071843-8072103(-)$1	260	198	224	15.7078
GUGGAUGAAGACCCUAUCUCCCACAA	chr7:103112422-103112651(-)$1	229	78	104	14.8809
GUGCUAGAUGUCAUCUUCUAUCAUUU	chr1:44443555-44443801(+)$1	246	13	39	15.0423
UGUAGAUGACAACCUCCAUUCUAUUU	chrX:23803926-23804181(+)$1	255	57	83	15.3592
GACUGCAGGGGGGCGGCAGCAGCGGC	chr3:184052702-184053000(+)$1	298	56	82	15.6127
UUUGGGGGCUUUUUUUCUUGGCAAAU	chr7:2704195-2704444(+)$1	249	135	161	15.8773
GUCUCCACUCAGUGACGUGGGAUUUU	chr20:62565892-62566145(+)$1	253	47	73	16.2113
GUUUUAAUUUAUUUUUGUUGAGAUUU	chr1:11979783-11980073(-)$1	290	85	111	17.5503
CACCUUGUUGGAGCCUGCAGGGUGGU	chr11:1774089-1774359(-)$1	270	183	209	16.3194
GAAGCUGCUCAAUUAUGCACCCCUGG	chr11:840146-840416(-)$1	270	11	37	16.0318
GGAGCCGCUAUUAUCUGCGUUCUCUG	chr17:76168166-76168426(+)$1	260	210	236	14.8116
CUGUAGGUAGAAGUAAACUCUGCAGU	chr17:55198240-55198472(+)$1	232	197	223	15.2202
CACGCAGGACCAACUACCUCCGUCAG	chr16:450305-450612(+)$1	307	67	93	15.5398
GGUCCCAUGGAAAAUGAUGGCCUGGG	chr1:26144323-26144592(+)$1	269	209	235	16.4401
AUACUGUGUCAUGUUUUAUAAUUUAU	chr5:52782113-52782354(+)$1	241	10	36	15.6466
GGCAGCUGCAACAUUCCAGUGUUUGA	chr1:183522882-183523140(+)$1	258	84	110	15.0017
ACUUGAAGAACCCUGACUUUGUUUCU	chr6:29913127-29913368(+)$1	241	162	188	15.0568
GUCCUCCCUGUUGAUUGGUCUGGCAU	chr2:10567480-10567764(+)$1	284	198	224	15.6176
UUUCCUGUCUUCCUCUACAGAGAAUG	chr2:85808776-85809085(+)$1	309	137	163	13.7790
CCGGCCGCGAAGGUAAGUGUUCCGGA	chr3:48481590-48481823(+)$1	233	120	146	15.9634
GGGCACAGCCUGGCCCCUGUGCACCG	chr14:95090164-95090457(+)$1	293	54	80	14.1233
UCCCAGUUGGCCAGAAAACUGGGCCU	chr19:12810560-12810836(-)$1	276	39	65	16.4165
ACUGUGUACCUCCAGCUGCUCAGGAC	chr2:85835430-85835723(-)$1	293	182	208	16.9964
UGGACCAUGUAUGAUGAUGAAAGCCU	chr3:33038264-33038605(-)$1	341	55	81	15.7270
UUUUGAAAAGCAGACAUUUUAAAAAA	chr20:30194062-30194294(+)$1	232	86	112	17.5503
ACAGUGUCAUGAUGUAGUAGUGUCUU	chr4:83274974-83275227(-)$1	253	187	213	14.5150
CUGCUGAGUUUCUGUUCUCCCUGGGA	chr17:76170324-76170607(-)$1	283	113	139	17.0028
UCUUGGGGGGAUCAAACCUUAGGAAA	chr19:972586-972837(+)$1	251	110	136	17.2257
UAUUGGGGGAAAAAUGCCUGAAAAUU	chr6:31807266-31807549(+)$1	283	146	172	15.5402
GGGGUGGGGGAUCCAGCUUAUUCUUU	chr17:56168132-56168394(+)$1	262	67	93	17.5503
UUUUUUAAAUAAACAAUUGGGGGAAU	chr3:32938483-32938733(+)$1	250	209	235	17.0575
AGACUUAUUUUCCUUUGUAAUGUAUU	chr17:40466497-40466768(-)$1	271	86	112	15.3304
UAUAUUAGGGAUAAAACAUAUAGGUG	chr10:75531192-75531471(+)$1	279	78	104	15.8511
UGUGCCUAUCACCUCUUAUGCACACC	chr20:23614347-23614566(-)$1	219	34	60	15.4136
CUAUUCACUUUACACUGUGAAAGGUG	chr1:19630414-19630715(-)$1	301	144	170	16.8867
GCCCAGGUACUUCCUCAUCGAGCGCG	chr15:79214421-79214647(-)$1	226	94	120	17.1180
AAGAAUAAUCAUGAAUUUGUAUGCUU	chr16:58554985-58555294(-)$1	309	12	38	15.9300
ACAAUAGGAACAAAGGCCUGAUUGAG	chr20:35869834-35870058(+)$1	224	178	204	14.2671
AUUUGCUUGUACAUAAAGGCUUAAUU	chr14:70238515-70238770(+)$1	255	77	103	15.3767
GCCUCAGGACACACACCCCUGCCUCA	chr1:990353-990607(+)$1	254	214	240	14.1249
CACCUUGUUGGAGCCUGCAGGGUGGU	chr11:1774024-1774289(-)$1	265	113	139	16.3194
UCCCCACCUUCACCUCGGAGGGAUGG	chr1:155106725-155106946(+)$1	221	19	45	15.2031
GUAGCCAGACCCCAAGCUGGCCCACU	chr2:220403939-220404164(-)$1	225	158	184	14.6919
UCUGCAUGAUUCUGAACAUCUGGAUG	chr17:53469945-53470183(-)$1	238	32	58	15.9058
AAAAGUGAACAAUAAAUCAUUUCAAA	chr17:80015705-80016016(-)$1	311	231	257	14.8717
AAGGUGCUGGACUUUGAGCACUUUCU	chr12:56553755-56554032(+)$1	277	14	40	15.9991
GCAUCAUAUUUCUUUUUGUGUGUCAU	chr13:48650710-48651113(-)$1	403	247	273	14.7299
GGCCCUGUAGUCCGCCACAGGGCUCU	chr15:64448138-64448366(-)$1	228	183	209	15.3717
GCCAAGGGUUCUCUGUCCCUGGUUCA	chr10:73576421-73576678(-)$1	257	72	98	15.8989
GAAAGAAUUUUAAGUUAGGCUUUCUA	chr6:35801268-35801561(-)$1	293	180	206	16.2350
uguuuuaauuuuuuuuuuaauagacg	chr17:19481208-19481463(+)$1	255	84	110	14.6435
UUUGAAAAUUUUUAUUUUUUUAAGAU	chr18:77662369-77662646(-)$1	277	80	106	13.9909
UUUGUACUUUGAUAUCAGUAUUUUCU	chr14:34903960-34904311(-)$1	351	140	166	14.6495
AGCCAAGUAGGUAAGCACUGAACUAC	chr6:41756881-41757143(+)$1	262	183	209	16.2708
GAGGAGUUGUACGCCAAGCUCAUCUU	chr16:88781810-88782128(-)$1	318	38	64	14.9312
GUUUGUUAAAAAAGAGUAAUAAAAGG	chr6:31605338-31605592(+)$1	254	169	195	16.3288
GGGUUUGGAUUAACCCUCAAAUCCUG	chr12:56553270-56553533(+)$1	263	49	75	17.5503
ACCCCCAUGAGAGAAGGAGGGGAGCA	chr19:33791740-33791981(-)$1	241	132	158	15.2896
ACUGCGGCUUUUCGCUGUGGCUCGUC	chr11:2966133-2966381(-)$1	248	193	219	14.7658
GUGUGAUCUUUAUUUUGAAAAAUACA	chr1:31404287-31404612(-)$1	325	219	245	15.6784
AGCGUCCCUGCCUCCCGUGGGCCCUG	chr9:95883933-95884210(-)$1	277	122	148	15.6787
AGGAAGGACAUUAAAUUCUUUCCCUG	chr1:225589287-225589560(-)$1	273	183	209	14.2569

#DB
((((((((........).))))))).	chr14:77935458-77935781(+)$1	1	87	113	16.9192
((((((((........)))...))))	chr12:8071843-8072103(-)$1	1	198	224	15.7078
((((..((........))..))))))	chr7:103112422-103112651(-)$1	1	78	104	14.8809
(((.((((........)))).))).(	chr1:44443555-44443801(+)$1	1	13	39	15.0423
((((((((........)).)))))..	chrX:23803926-23804181(+)$1	1	57	83	15.3592
(.((((.(........).))))).).	chr3:184052702-184053000(+)$1	1	56	82	15.6127
((((.(((........)))..)))).	chr7:2704195-2704444(+)$1	1	135	161	15.8773
(((.((((........)))))))...	chr20:62565892-62566145(+)$1	1	47	73	16.2113
((((((((........))))))))))	chr1:11979783-11980073(-)$1	1	85	111	17.5503
((((((((........))))))))).	chr11:1774089-1774359(-)$1	1	183	209	16.3194
(..(.(((........))))..)).)	chr11:840146-840416(-)$1	1	11	37	16.0318
(((((.((........)))))))).)	chr17:76168166-76168426(+)$1	1	210	236	14.8116
.(((((((........)).)))))))	chr17:55198240-55198472(+)$1	1	197	223	15.2202
.(((.(((........))).))))))	chr16:450305-450612(+)$1	1	67	93	15.5398
((..((((........)))).)))))	chr1:26144323-26144592(+)$1	1	209	235	16.4401
(((.((((........))))...)))	chr5:52782113-52782354(+)$1	1	10	36	15.6466
((((.(((........))))))))))	chr1:183522882-183523140(+)$1	1	84	110	15.0017
(..(((((........)))))..)).	chr6:29913127-29913368(+)$1	1	162	188	15.0568
(((...((........))...)))).	chr2:10567480-10567764(+)$1	1	198	224	15.6176
.(((((((........)))).))).(	chr2:85808776-85809085(+)$1	1	137	163	13.7790
((((.(((........)))..)))))	chr3:48481590-48481823(+)$1	1	120	146	15.9634
((((((((........)))))).)).	chr14:95090164-95090457(+)$1	1	54	80	14.1233
.(((((((........)))))))...	chr19:12810560-12810836(-)$1	1	39	65	16.4165
.(((.(((........))).)))...	chr2:85835430-85835723(-)$1	1	182	208	16.9964
(....(((........)))..)))))	chr3:33038264-33038605(-)$1	1	55	81	15.7270
((((((((........))))))))))	chr20:30194062-30194294(+)$1	1	86	112	17.5503
(((.((.(........))).)))).)	chr4:83274974-83275227(-)$1	1	187	213	14.5150
(....(((........)))...))))	chr17:76170324-76170607(-)$1	1	113	139	17.0028
((((((((........))))))))).	chr19:972586-972837(+)$1	1	110	136	17.2257
((((.(((........))).))...)	chr6:31807266-31807549(+)$1	1	146	172	15.5402
((((((((........))))))))))	chr17:56168132-56168394(+)$1	1	67	93	17.5503
((((((((........))))))))).	chr3:32938483-32938733(+)$1	1	209	235	17.0575
(.(.((((........))))).))))	chr17:40466497-40466768(-)$1	1	86	112	15.3304
(((((..(........)))))))).(	chr10:75531192-75531471(+)$1	1	78	104	15.8511
(((((.((........)).)))))..	chr20:23614347-23614566(-)$1	1	34	60	15.4136
((((((((........))))...)))	chr1:19630414-19630715(-)$1	1	144	170	16.8867
(((..(((........)))..).)))	chr15:79214421-79214647(-)$1	1	94	120	17.1180
(((.((((........))))...)))	chr16:58554985-58555294(-)$1	1	12	38	15.9300
((((((((........))).))))..	chr20:35869834-35870058(+)$1	1	178	204	14.2671
(((.((((........))))..))))	chr14:70238515-70238770(+)$1	1	77	103	15.3767
(.....((........))))))))).	chr1:990353-990607(+)$1	1	214	240	14.1249
((((((((........))))))))).	chr11:1774024-1774289(-)$1	1	113	139	16.3194
((((..((........)).)))))((	chr1:155106725-155106946(+)$1	1	19	45	15.2031
((.(((((........)))))..)).	chr2:220403939-220404164(-)$1	1	158	184	14.6919
((((.(((........))).))))))	chr17:53469945-53470183(-)$1	1	32	58	15.9058
..((((((........))))))...)	chr17:80015705-80016016(-)$1	1	231	257	14.8717
((((((((........)))))))))(	chr12:56553755-56554032(+)$1	1	14	40	15.9991
(((.((((........))))))))))	chr13:48650710-48651113(-)$1	1	247	273	14.7299
((((((((........)))))))...	chr15:64448138-64448366(-)$1	1	183	209	15.3717
((((.(((........))))))))).	chr10:73576421-73576678(-)$1	1	72	98	15.8989
(((((..(........)..)))))))	chr6:35801268-35801561(-)$1	1	180	206	16.2350
((((((((........))))..))))	chr17:19481208-19481463(+)$1	1	84	110	14.6435
)(((((((........)))))))...	chr18:77662369-77662646(-)$1	1	80	106	13.9909
(..(((((........))))).....	chr14:34903960-34904311(-)$1	1	140	166	14.6495
((...(((........)))...))))	chr6:41756881-41757143(+)$1	1	183	209	16.2708
((.(((((........))))).))))	chr16:88781810-88782128(-)$1	1	38	64	14.9312
.(((((((........))))))).))	chr6:31605338-31605592(+)$1	1	169	195	16.3288
((((((((........))))))))))	chr12:56553270-56553533(+)$1	1	49	75	17.5503
..((((.(........).))))..).	chr19:33791740-33791981(-)$1	1	132	158	15.2896
((.((.((........)).))..)))	chr11:2966133-2966381(-)$1	1	193	219	14.7658
((((..((........))...)))))	chr1:31404287-31404612(-)$1	1	219	245	15.6784
((.(((((........).)))).)))	chr9:95883933-95884210(-)$1	1	122	148	15.6787
)(((((((........))))))))))	chr1:225589287-225589560(-)$1	1	183	209	14.2569

#PSSM
f : 0.12	d : 0.11	g : 0.09	i : 0.09	e : 0.09	h : 0.07	b : 0.07	= : 0.07	c : 0.06	a : 0.03	[ : 0.03	+ : 0.01	: : 0.01	$ : 0.01	" : 0.01	# : 0.01	! : 0.01	H : 0.01	
g : 0.15	f : 0.11	e : 0.11	c : 0.09	d : 0.09	i : 0.09	= : 0.07	h : 0.06	! : 0.06	# : 0.04	[ : 0.03	b : 0.03	$ : 0.01	
g : 0.12	f : 0.12	d : 0.12	e : 0.09	c : 0.07	= : 0.07	i : 0.07	! : 0.06	[ : 0.06	h : 0.04	# : 0.03	a : 0.03	b : 0.01	$ : 0.01	" : 0.01	
e : 0.15	g : 0.12	[ : 0.12	f : 0.09	d : 0.07	= : 0.07	i : 0.07	h : 0.04	c : 0.04	! : 0.03	" : 0.03	# : 0.03	b : 0.03	a : 0.01	$ : 0.01	
d : 0.23	[ : 0.14	g : 0.12	e : 0.11	i : 0.07	! : 0.06	= : 0.06	f : 0.04	" : 0.03	# : 0.03	b : 0.03	h : 0.01	$ : 0.01	
c : 0.23	d : 0.22	g : 0.09	e : 0.09	! : 0.07	i : 0.07	= : 0.06	[ : 0.04	f : 0.03	" : 0.01	b : 0.01	$ : 0.01	
c : 0.23	d : 0.19	b : 0.15	g : 0.09	i : 0.07	= : 0.06	e : 0.06	[ : 0.04	f : 0.03	! : 0.03	
c : 0.23	d : 0.17	b : 0.15	a : 0.11	i : 0.07	g : 0.07	= : 0.06	e : 0.06	f : 0.03	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.23	d : 0.17	b : 0.15	a : 0.11	i : 0.07	g : 0.07	= : 0.06	e : 0.06	f : 0.03	
c : 0.23	b : 0.17	d : 0.17	g : 0.09	i : 0.07	] : 0.06	= : 0.06	e : 0.06	f : 0.03	2 : 0.01	
c : 0.23	d : 0.22	g : 0.11	] : 0.07	i : 0.07	e : 0.07	= : 0.06	f : 0.04	2 : 0.03	3 : 0.03	b : 0.01	
d : 0.22	e : 0.14	g : 0.12	] : 0.09	3 : 0.07	2 : 0.07	i : 0.07	= : 0.06	f : 0.06	a : 0.01	h : 0.01	b : 0.01	
e : 0.14	g : 0.12	3 : 0.12	2 : 0.11	f : 0.09	d : 0.09	i : 0.07	= : 0.06	] : 0.04	c : 0.04	b : 0.03	h : 0.01	a : 0.01	
g : 0.14	d : 0.14	e : 0.11	3 : 0.09	f : 0.09	2 : 0.09	c : 0.07	i : 0.07	= : 0.06	] : 0.03	h : 0.01	b : 0.01	a : 0.01	> : 0.01	
g : 0.14	e : 0.11	d : 0.11	f : 0.09	c : 0.07	i : 0.07	3 : 0.07	h : 0.06	= : 0.06	2 : 0.06	] : 0.04	a : 0.03	b : 0.01	> : 0.01	
d : 0.14	f : 0.11	g : 0.09	e : 0.09	i : 0.09	= : 0.07	b : 0.07	h : 0.06	3 : 0.06	c : 0.04	] : 0.03	4 : 0.01	6 : 0.01	: : 0.01	> : 0.01	2 : 0.01	G : 0.01	
d : 0.11	f : 0.09	i : 0.09	b : 0.09	g : 0.07	3 : 0.07	= : 0.07	h : 0.06	: : 0.06	] : 0.04	a : 0.03	c : 0.03	e : 0.03	4 : 0.03	5 : 0.01	6 : 0.01	> : 0.01	G : 0.01	
3 : 0.09	f : 0.09	] : 0.09	b : 0.09	= : 0.07	h : 0.06	e : 0.06	d : 0.06	g : 0.06	: : 0.04	c : 0.04	4 : 0.04	2 : 0.03	i : 0.01	5 : 0.01	a : 0.01	D : 0.01	6 : 0.01	> : 0.01	G : 0.01	

#score	987.8568440156167
#seq	63
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_CDS_m1_run2.txt

#BEAR
eeee[dddd!!ccc[bboooooobb22ccc22dddd]e	chr11:32605292-32605556(+)$1	264	68	106	11.8682
eedddd####eeeee[bbmmmmbb]eeeee]dddd]ee	chr21:47931247-47931552(+)$1	305	157	195	11.1900
ddffffff[ccc[cccooooooccc]cccffffff]dd	chr19:39924203-39924409(-)$1	206	90	128	12.8331
::dddd[a!!eeeeecccmmmmccc]eeeee22a]ddd	chr7:73668509-73668808(-)$1	299	85	123	11.7800
ggggeeeee[ccc[ddddmmmmdddd333ccc]eeeee	chr19:50169163-50169427(+)$1	264	202	240	11.4112
##dddd!!ccc[ffffffmmmmffffff]ccc333ddd	chr5:159855561-159855836(+)$1	275	193	231	13.3892
!dddd[dddd[ccc!!bbmmmmbb22ccc333dddddd	chr17:37009198-37009440(-)$1	242	145	183	12.3485
dd[ccc[bb####ddddoooooodddd22bbcccdddd	chr15:66795749-66795967(-)$1	218	108	146	10.7098
ceeeeeeeeee"""ddddmmmmdddd]eeeee]eeeee	chr15:91459330-91459581(+)$1	251	120	158	10.4343
fff[bb!!ccc[acccooooooccc]a]ccc4444bbf	chr6:26204758-26204990(+)$1	232	10	48	13.1308
ccc:::==========oooooo==========cccddd	chrX:119007240-119007456(+)$1	216	138	176	10.7933
ffccc[ccc[ccceeeeemmmmeeeee]ccc]cccccc	chr19:39924070-39924309(-)$1	239	32	70	11.2992
$$dddd[bbggggggg[bblllbb]ggggggg]bb]dd	chr14:23495185-23495423(-)$1	238	105	143	10.5797
ggggggbbbb[ccc[cccnnnnnccc]ccc]bb]bb]g	chr11:62530250-62530519(+)$1	269	6	44	10.3125
b[ddddccc!!ffffffnnnnnffffffccc333dddd	chr16:85839239-85839483(+)$1	244	99	137	12.0548
!!dddd"""gggggggooooooggggggg]dddd333f	chr2:217365962-217366168(+)$1	206	19	57	13.6022
b"""dddd[ccc[aooooooa]ccc]dddd]bb]ccc]	chr7:22852618-22852881(-)$1	263	123	161	10.3025
c!!dddd[bbgggggggooooooggggggg]bb]dddd	chr19:13056617-13056878(+)$1	261	38	76	12.7607
Beeeee[ccc[ccc[ccclllccc]ccc]ccc333eee	chr11:118272242-118272473(+)$1	231	75	113	13.0565
!ccc[eeeee[ccc[bboooooobb]ccc]eeeee]cc	chr12:57037136-57037394(-)$1	258	107	145	12.2263
::dddd[ggggggg[cccmmmmccc]ggggggg]dddd	chr2:55462472-55462735(+)$1	263	112	150	12.7814
eeee[bb"""dddd[cccooooooccc]dddd22bb]e	chr3:49065141-49065394(-)$1	253	126	164	11.3523
ffffff"""bb!!cccccclllccc]ccc333bb333f	chr8:146016772-146016981(-)$1	209	164	202	12.3600
ggggdddd[ccc[eeeeemmmmeeeee333ccc22ddd	chr12:21796770-21796977(-)$1	207	71	109	12.0543
ddffffff[ccc[cccooooooccc]cccffffff]dd	chr19:39924210-39924470(-)$1	260	151	189	12.8331
hhhh####bb[ccc[cccmmmmcccccc]bb4444hhh	chr4:57314780-57315049(+)$1	269	110	148	12.1303
===========!!fffffflllffffff4444======	chr3:101405288-101405493(-)$1	205	160	198	11.6136
!dddd[a!!eeeee[bbnnnnnbb]eeeee22a]dddd	chr16:31202245-31202483(+)$1	238	99	137	11.2833
b[ddddccc!!ffffffnnnnnffffffccc333dddd	chr16:85839283-85839552(+)$1	269	55	93	12.0548
ffffff[a[cccccccccmmmmccc]ccc]ccc]a]ff	chr15:34517164-34517435(+)$1	271	10	48	13.3473
"""ggggggg[ggggggglllgggggggggggggga]g	chr10:75012128-75012429(-)$1	301	47	85	11.5736
c!!ccc"""ccc[eeeeemmmmeeeee]ccc]ccc22c	chr12:123102940-123103192(+)$1	252	104	142	12.2882
!!bbccc!!eeeee[bboooooobb]eeeee333ccc]	chr16:85834722-85834984(+)$1	262	132	170	12.5193
!!eeeeeffffffcccooooooccc]ffffff333eee	chr4:109543570-109543781(+)$1	211	83	121	13.4961
"adddd[dddd[eeeeennnnneeeee]dddd4444dd	chr14:50052934-50053185(-)$1	251	146	184	10.8020
eeee[ddddiiiiiiiiimmmmiiiiiiiii333dddd	chr12:102110405-102110691(+)$1	286	187	225	13.4531
eeee[ddddccc[a[cccmmmmcccaccc4444dddde	chr20:62152559-62152800(+)$1	241	18	56	13.8723
dddd!!ccc[a!!ddddnnnnndddd22a]ccc]dddd	chr2:198352976-198353220(-)$1	244	0	38	10.9262
cc[ccc[eeeee"""cccmmmmccceeeee22ccc]cc	chr1:109954398-109954636(-)$1	238	151	189	12.6742
[dddd!!ffffff[ddddllldddd]ffffff333ddd	chr11:77783969-77784227(-)$1	258	70	108	11.5772
i!!ccc[bb[bb[a[cccmmmmcccabb]bb]ccc22i	chrX:151935310-151935579(-)$1	269	170	208	11.5183
eeee"""eeeee[a[cccmmmmccc]a22eeeeeeeee	chr19:13044314-13044589(-)$1	275	74	112	12.3697
!!eeeeeffffffcccooooooccc]ffffff333eee	chr4:109543598-109543874(+)$1	276	55	93	13.4961
[ffffff[dddd"""ccclllccc333dddd]ffffff	chr11:8015924-8016165(+)$1	241	47	85	10.4395
###dddd[bb"""cccooooooccc333bbdddddddd	chr4:39457925-39458163(-)$1	238	16	54	12.7426
eeee"""ccc[bbcccooooooccc333bb]ccc]eee	chr17:79852260-79852529(+)$1	269	229	267	12.7857
ddddccc[eeeee!!cccmmmmccceeeee]ccc22dd	chr7:97481393-97481674(-)$1	281	11	49	12.6628
eeee[bb"""dddd[cccooooooccc]dddd22bb]e	chr3:49065194-49065439(-)$1	245	171	209	11.3523
iiiiiii!!dddd"""bbmmmmbb]dddd]iiiiiiii	chr2:176044725-176044967(-)$1	242	109	147	11.0153
qddddeeeeeccc[ddddmmmmddddccccccgggggg	chr12:102467983-102468271(-)$1	288	96	134	10.6082
gggggg:==========aooooooa]==========::	chr2:63832978-63833250(+)$1	272	191	229	10.4559
ccdddd"""hhhhhhhhnnnnnhhhhhhhh4444dddd	chr2:217365984-217366214(+)$1	230	161	199	10.6500
[a[dddd[ccc!!cccooooooccc]ccc]dddd]a]c	chr3:49066670-49066898(-)$1	228	66	104	13.9440
b[a!!ggggggg"""cccmmmmcccggggggg22a]bb	chr6:133138523-133138730(+)$1	207	54	92	12.7165
H:ffffff"""gggggggmmmmggggggg4444fffff	chr11:67374340-67374597(+)$1	257	162	200	10.2032
:ddddeeeeedddd[cccmmmmcccdddd22eeeee]d	chr6:133138097-133138300(+)$1	203	124	162	10.5610
d[ccc"""ccc[ffffffmmmmffffff333cccccc]	chr1:203830668-203830905(+)$1	237	105	143	12.0837
:iiiiiiiii[ccc!!bbmmmmbb22ccc]iiiiiiii	chr1:149858474-149858698(+)$1	224	144	182	11.4001

#otherMatches

#Seq PSSM
CGCGCGGCCCAGUUCCCUUUUCCGGUCGGCGUGGUCUU	chr11:32605292-32605556(+)$1	264	68	106	11.8682
CAGGUGUCCCCCGACCGCCGUCGCUGUUGGCCACCUUG	chr21:47931247-47931552(+)$1	305	157	195	11.1900
UGGCCCAGAUUUAUGGUGAGUCCCAGGAACUGGGCGCA	chr19:39924203-39924409(-)$1	206	90	128	12.8331
AGGCGCGAGAAUGGAGGUGGAGGCCGUCUGUGGUGGCG	chr7:73668509-73668808(-)$1	299	85	123	11.7800
GGAGGGGGCCGGGAUCCAGUGGUGGGCACCCCAGUCCC	chr19:50169163-50169427(+)$1	264	202	240	11.4112
AGUAUUGUGGUUGCUUUUCCAUGGAGGUUACUUAAAAU	chr5:159855561-159855836(+)$1	275	193	231	13.3892
UCAAUUGUGCUGACAACACAGGUGAGGUCUUUGCACGU	chr17:37009198-37009440(-)$1	242	145	183	12.3485
UCGCCCACUGAUAUCGGUGUACUCCGAAAAGGGGGAGU	chr15:66795749-66795967(-)$1	218	108	146	10.7098
CGCCUCCUGCUAGAGCGGCGAACCGUGGGCAGUGAGGU	chr15:91459330-91459581(+)$1	251	120	158	10.4343
UGCGCGUUUUCAGUCUUCAUUUAGGUCCGAAUUCCCGG	chr6:26204758-26204990(+)$1	232	10	48	13.1308
GCCUUUUGCCAGGGUUGAGGUGGGUUCUGGUAAUGCCU	chrX:119007240-119007456(+)$1	216	138	176	10.7933
GGAGGUGGCUCUGGGAGGGAGGCCUUCACAGCGCUCCU	chr19:39924070-39924309(-)$1	239	32	70	11.2992
UAUAGUGGCUCUACCCCCUGAAAGAGGGUGGAUGCAGC	chr14:23495185-23495423(-)$1	238	105	143	10.5797
AAGAGCUCAGCGACUUUUAUUGCAGAUGUCUUUAGAGG	chr11:62530250-62530519(+)$1	269	6	44	10.3125
UGUAUCGCAUUAAGUUCAAGGAGAGCUUUGCUGAGAUG	chr16:85839239-85839483(+)$1	244	99	137	12.0548
CAAAAACGAGGCAGAUUUACUUAUUUGCCAUUUUCUAU	chr2:217365962-217366168(+)$1	206	19	57	13.6022
AAUCAGCGGACAGCAUGGAAGAUGUGUGCUCUGGCUCG	chr7:22852618-22852881(-)$1	263	123	161	10.3025
GGAAGUGGUcggcgcgcggcgcggcgcgccUGGGCGCU	chr19:13056617-13056878(+)$1	261	38	76	12.7607
GGUCCUUCCGGCGGGUGACAUUCAGCCGGCGGUUCGGG	chr11:118272242-118272473(+)$1	231	75	113	13.0565
CUGUGUUUGCUGGUGUUGGUGAGAGGACCCGUGAAGGC	chr12:57037136-57037394(-)$1	258	107	145	12.2263
AGUCGCCUUCGUCGAGAGUGCCCUUCUGAUGAAUGUGG	chr2:55462472-55462735(+)$1	263	112	150	12.7814
CGGCAUGGUUUCUGCGGUAUCCCAAUCACAGACACAGG	chr3:49065141-49065394(-)$1	253	126	164	11.3523
GCCUGGAGGAGAAGCCUGGAGACCGUGGCAAGCUGGCC	chr8:146016772-146016981(-)$1	209	164	202	12.3600
CAGUCCUGAUUGCAUCAUAAUUGUGGUUUCCAACCCAG	chr12:21796770-21796977(-)$1	207	71	109	12.0543
UGGCCCAGAUUUAUGGUGAGUCCCAGGAACUGGGCGCA	chr19:39924210-39924470(-)$1	260	151	189	12.8331
GAUGUAACCACCAAAGAAAUUGUUCUUGCUGAUGUUAU	chr4:57314780-57315049(+)$1	269	110	148	12.1303
ACGGGAAGGUAAAAAGCCGCGUCGGCUUCACCUACCUU	chr3:101405288-101405493(-)$1	205	160	198	11.6136
GGGCCGCGGCGGGGACCGUGGAGGCUUCCGAGGGGGCC	chr16:31202245-31202483(+)$1	238	99	137	11.2833
UGUAUCGCAUUAAGUUCAAGGAGAGCUUUGCUGAGAUG	chr16:85839283-85839552(+)$1	269	55	93	12.0548
AUUUCCAGGGCGGAAAUGACGUCGUAUUCACGCGCCGG	chr15:34517164-34517435(+)$1	271	10	48	13.3473
UUUUCGGGCUUGUACCGCUUGGCGGUGCGGCCUGGUGU	chr10:75012128-75012429(-)$1	301	47	85	11.5736
UCCUGAUCAGCUGUCAGAUUGUUCUGAGAGUCUCAUCG	chr12:123102940-123103192(+)$1	252	104	142	12.2882
UUUCCACCUCUGUGUGUGUACGAGCUCAUGGUAAGUGU	chr16:85834722-85834984(+)$1	262	132	170	12.5193
AUAUUUUUCUUAUGCAGGUUCGUGCUGUAAGACCUAAA	chr4:109543570-109543781(+)$1	211	83	121	13.4961
GCCACCCGCGAAAAUUCGGCCAGGGUUCUCGCUCUUGG	chr14:50052934-50053185(-)$1	251	146	184	10.8020
AAAUCUGaauauuuaaauuuauauuuaaGUACUUUUCA	chr12:102110405-102110691(+)$1	286	187	225	13.4531
GAGCGCCCUUCAUGACGGAAGGCCGCUGACCCGAGGGG	chr20:62152559-62152800(+)$1	241	18	56	13.8723
UUUAGGUUGGUGGGACAAGUGAUGUUGAAGUGAAUGAA	chr2:198352976-198353220(-)$1	244	0	38	10.9262
UGUAAUUUUCCCCCAUGCUUUUGCAGGGAAUUAUUUUA	chr1:109954398-109954636(-)$1	238	151	189	12.6742
CCUUUUUUUUUGCUGGAUAUUAUCUUGUAAAACGUGAA	chr11:77783969-77784227(-)$1	258	70	108	11.5772
AAAACUACCUGGAGUACCGGCAGGUCCCCGGCAGUGAU	chrX:151935310-151935579(-)$1	269	170	208	11.5183
GAGUCAUGGCGGAUGGUCAGGUGGCGGAACUGCUGCUC	chr19:13044314-13044589(-)$1	275	74	112	12.3697
AUAUUUUUCUUAUGCAGGUUCGUGCUGUAAGACCUAAA	chr4:109543598-109543874(+)$1	276	55	93	13.4961
GCACUUUAAUGGGAGUCCCUGGGAGGACCAUGGGAGUG	chr11:8015924-8016165(+)$1	241	47	85	10.4395
CAAGAUGAGGUCUGUGUAUGCUCACUUCCCCAUCAACG	chr4:39457925-39458163(-)$1	238	16	54	12.7426
CGGCCCCGACUGUGAGUGUCCCCUCUGUGCUGUCUGCU	chr17:79852260-79852529(+)$1	269	229	267	12.7857
UGGCUGAGCCAUUACUGGAUGCCCAAGUGGAUCAAUGC	chr7:97481393-97481674(-)$1	281	11	49	12.6628
CGGCAUGGUUUCUGCGGUAUCCCAAUCACAGACACAGG	chr3:49065194-49065439(-)$1	245	171	209	11.3523
UUAUCUCGACCAGAGGCUAGUAGGACUGGAGAGGUAAU	chr2:176044725-176044967(-)$1	242	109	147	11.0153
UUGGAGGAGACCACAAGCUGUUGUUUUGGGUGACUGAA	chr12:102467983-102468271(-)$1	288	96	134	10.6082
AUUUUGGAGCUAUUUCCCUUCUUUGAGGAAGUAGUUAU	chr2:63832978-63833250(+)$1	272	191	229	10.4559
AGACAUCACUGGCCUAUAAUAAAUGGGUUAAUUUAUGU	chr2:217365984-217366214(+)$1	230	161	199	10.6500
UCUCUGCGGCGCGGUCCUCGGAGACACGCGGCGGUGUC	chr3:49066670-49066898(-)$1	228	66	104	13.9440
AUAUUAACAAGAAAUUGCAUGCGUGUUUUGUUUUUUUU	chr6:133138523-133138730(+)$1	207	54	92	12.7165
UGGUCGCUUCCCGCGCGGGUAUCUGUGCGUUUCAGCGG	chr11:67374340-67374597(+)$1	257	162	200	10.2032
GGAUGAAGGUUAUGCUGGGUAAUCAUAUAAAACCUUGU	chr6:133138097-133138300(+)$1	203	124	162	10.5610
UGUGAAAUUCCACCAUGGCGUACCGUGGCCAGGGUCAG	chr1:203830668-203830905(+)$1	237	105	143	12.0837
ACCGCUUGCUGCGCAAAGGCAACUACGCGGAGCGGGUG	chr1:149858474-149858698(+)$1	224	144	182	11.4001

#DB
((((.((((..(((.((......))..)))..)))).)	chr11:32605292-32605556(+)$1	1	68	106	11.8682
((((((....(((((.((....)).))))).)))).))	chr21:47931247-47931552(+)$1	1	157	195	11.1900
((((((((.(((.(((......))).))))))))).))	chr19:39924203-39924409(-)$1	1	90	128	12.8331
..((((.(..((((((((....))).)))))..).)))	chr7:73668509-73668808(-)$1	1	85	123	11.7800
(((((((((.(((.((((....))))...))).)))))	chr19:50169163-50169427(+)$1	1	202	240	11.4112
..((((..(((.((((((....)))))).)))...)))	chr5:159855561-159855836(+)$1	1	193	231	13.3892
.((((.((((.(((..((....))..)))...))))))	chr17:37009198-37009440(-)$1	1	145	183	12.3485
((.(((.((....((((......))))..)))))))))	chr15:66795749-66795967(-)$1	1	108	146	10.7098
)((((((((((...((((....)))).))))).)))))	chr15:91459330-91459581(+)$1	1	120	158	10.4343
(((.((..(((.((((......))).).)))....)))	chr6:26204758-26204990(+)$1	1	10	48	13.1308
)))...((((((((((......))))))))))((((((	chrX:119007240-119007456(+)$1	1	138	176	10.7933
(((((.(((.((((((((....))))).))).))))))	chr19:39924070-39924309(-)$1	1	32	70	11.2992
..((((.(((((((((.((...)).))))))).)).))	chr14:23495185-23495423(-)$1	1	105	143	10.5797
((((((((((.(((.(((.....))).))).)).)).)	chr11:62530250-62530519(+)$1	1	6	44	10.3125
(.(((((((..((((((.....)))))))))...))))	chr16:85839239-85839483(+)$1	1	99	137	12.0548
..((((...(((((((......))))))).))))...)	chr2:217365962-217366168(+)$1	1	19	57	13.6022
(...((((.(((.(......).))).)))).)).))).	chr7:22852618-22852881(-)$1	1	123	161	10.3025
(..((((.(((((((((......))))))).)).))))	chr19:13056617-13056878(+)$1	1	38	76	12.7607
((((((.(((.(((.(((...))).))).)))...)))	chr11:118272242-118272473(+)$1	1	75	113	13.0565
.(((.(((((.(((.((......)).))).))))).))	chr12:57037136-57037394(-)$1	1	107	145	12.2263
..((((.(((((((.(((....))).))))))).))))	chr2:55462472-55462735(+)$1	1	112	150	12.7814
((((.((...((((.(((......))).))))..)).)	chr3:49065141-49065394(-)$1	1	126	164	11.3523
((((((...((..((((((...))).)))...))...)	chr8:146016772-146016981(-)$1	1	164	202	12.3600
((((((((.(((.(((((....)))))...)))..)))	chr12:21796770-21796977(-)$1	1	71	109	12.0543
((((((((.(((.(((......))).))))))))).))	chr19:39924210-39924470(-)$1	1	151	189	12.8331
((((....((.(((.(((....)))))).))....)))	chr4:57314780-57315049(+)$1	1	110	148	12.1303
(((((((((((..((((((...))))))....))))))	chr3:101405288-101405493(-)$1	1	160	198	11.6136
.((((.(..(((((.((.....)).)))))..).))))	chr16:31202245-31202483(+)$1	1	99	137	11.2833
(.(((((((..((((((.....)))))))))...))))	chr16:85839283-85839552(+)$1	1	55	93	12.0548
((((((.(.(((((((((....))).))).))).).))	chr15:34517164-34517435(+)$1	1	10	48	13.3473
...(((((((.(((((((...))))))))))))))).)	chr10:75012128-75012429(-)$1	1	47	85	11.5736
(..(((...(((.(((((....))))).))).)))..)	chr12:123102940-123103192(+)$1	1	104	142	12.2882
..(((((..(((((.((......)).)))))...))).	chr16:85834722-85834984(+)$1	1	132	170	12.5193
..((((((((((((((......))).))))))...)))	chr4:109543570-109543781(+)$1	1	83	121	13.4961
.(((((.((((.(((((.....))))).))))....))	chr14:50052934-50053185(-)$1	1	146	184	10.8020
((((.(((((((((((((....)))))))))...))))	chr12:102110405-102110691(+)$1	1	187	225	13.4531
((((.(((((((.(.(((....)))))))....)))))	chr20:62152559-62152800(+)$1	1	18	56	13.8723
((((..(((.(..((((.....))))..).))).))))	chr2:198352976-198353220(-)$1	1	0	38	10.9262
((.(((.(((((...(((....))))))))..))).))	chr1:109954398-109954636(-)$1	1	151	189	12.6742
.((((..((((((.((((...)))).))))))...)))	chr11:77783969-77784227(-)$1	1	70	108	11.5772
(..(((.((.((.(.(((....)))))).)).)))..)	chrX:151935310-151935579(-)$1	1	170	208	11.5183
((((...(((((.(.(((....))).)..)))))))))	chr19:13044314-13044589(-)$1	1	74	112	12.3697
..((((((((((((((......))).))))))...)))	chr4:109543598-109543874(+)$1	1	55	93	13.4961
.((((((.((((...(((...)))...)))).))))))	chr11:8015924-8016165(+)$1	1	47	85	10.4395
...((((.((...(((......)))...))))))))))	chr4:39457925-39458163(-)$1	1	16	54	12.7426
((((...(((.(((((......)))...)).))).)))	chr17:79852260-79852529(+)$1	1	229	267	12.7857
(((((((.(((((..(((....)))))))).)))..))	chr7:97481393-97481674(-)$1	1	11	49	12.6628
((((.((...((((.(((......))).))))..)).)	chr3:49065194-49065439(-)$1	1	171	209	11.3523
(((((((..((((...((....)).)))).))))))))	chr2:176044725-176044967(-)$1	1	109	147	11.0153
.)))))))))(((.((((....)))))))(((((((((	chr12:102467983-102468271(-)$1	1	96	134	10.6082
)))))).(((((((((((......).))))))))))..	chr2:63832978-63833250(+)$1	1	191	229	10.4559
))((((...((((((((.....))))))))....))))	chr2:217365984-217366214(+)$1	1	161	199	10.6500
.(.((((.(((..(((......))).))).)))).).)	chr3:49066670-49066898(-)$1	1	66	104	13.9440
(.(..(((((((...(((....))))))))))..).))	chr6:133138523-133138730(+)$1	1	54	92	12.7165
(.((((((...(((((((....)))))))....)))))	chr11:67374340-67374597(+)$1	1	162	200	10.2032
.(((((((((((((.(((....)))))))..))))).)	chr6:133138097-133138300(+)$1	1	124	162	10.5610
(.(((...(((.((((((....))))))...)))))).	chr1:203830668-203830905(+)$1	1	105	143	12.0837
.(((((((((.(((..((....))..))).))))))))	chr1:149858474-149858698(+)$1	1	144	182	11.4001

#PSSM
e : 0.13	! : 0.12	d : 0.10	c : 0.10	: : 0.06	g : 0.06	f : 0.06	b : 0.06	[ : 0.05	# : 0.03	" : 0.03	i : 0.03	$ : 0.01	B : 0.01	h : 0.01	= : 0.01	q : 0.01	H : 0.01	
e : 0.17	d : 0.17	! : 0.12	f : 0.08	g : 0.06	c : 0.06	[ : 0.06	: : 0.05	# : 0.03	" : 0.03	a : 0.03	i : 0.03	$ : 0.01	h : 0.01	= : 0.01	
d : 0.29	e : 0.18	f : 0.12	g : 0.06	c : 0.06	[ : 0.05	! : 0.05	" : 0.03	i : 0.03	h : 0.01	= : 0.01	b : 0.01	# : 0.01	a : 0.01	
d : 0.34	e : 0.18	c : 0.12	f : 0.10	g : 0.08	i : 0.03	[ : 0.01	: : 0.01	" : 0.01	h : 0.01	= : 0.01	b : 0.01	! : 0.01	
d : 0.34	c : 0.13	[ : 0.10	f : 0.10	e : 0.08	g : 0.05	! : 0.03	" : 0.03	i : 0.03	b : 0.01	: : 0.01	# : 0.01	= : 0.01	
d : 0.31	e : 0.13	f : 0.10	c : 0.10	g : 0.06	[ : 0.05	b : 0.05	" : 0.05	! : 0.03	i : 0.03	: : 0.01	# : 0.01	= : 0.01	
d : 0.15	[ : 0.15	e : 0.12	" : 0.12	c : 0.10	f : 0.06	! : 0.05	b : 0.05	# : 0.03	= : 0.03	g : 0.03	i : 0.03	a : 0.01	: : 0.01	
d : 0.12	e : 0.12	" : 0.12	f : 0.10	c : 0.10	! : 0.08	[ : 0.08	b : 0.06	= : 0.05	g : 0.05	# : 0.03	a : 0.03	i : 0.01	
c : 0.17	e : 0.13	b : 0.12	" : 0.12	d : 0.10	[ : 0.08	! : 0.06	= : 0.05	g : 0.05	f : 0.05	# : 0.01	i : 0.01	
c : 0.22	e : 0.15	g : 0.08	b : 0.08	! : 0.06	[ : 0.06	d : 0.06	= : 0.05	" : 0.05	f : 0.05	# : 0.03	i : 0.03	h : 0.01	
c : 0.24	e : 0.13	[ : 0.13	d : 0.10	g : 0.08	! : 0.05	= : 0.05	f : 0.05	b : 0.03	" : 0.03	# : 0.01	i : 0.01	a : 0.01	h : 0.01	
c : 0.29	e : 0.12	g : 0.12	f : 0.08	d : 0.08	[ : 0.06	! : 0.06	" : 0.03	= : 0.03	b : 0.03	# : 0.01	i : 0.01	h : 0.01	
c : 0.18	[ : 0.13	f : 0.12	e : 0.10	g : 0.10	" : 0.08	d : 0.06	! : 0.06	= : 0.03	# : 0.01	a : 0.01	i : 0.01	b : 0.01	h : 0.01	
c : 0.29	e : 0.13	g : 0.10	f : 0.08	d : 0.08	" : 0.08	a : 0.06	[ : 0.05	= : 0.03	i : 0.01	! : 0.01	h : 0.01	
[ : 0.24	c : 0.17	e : 0.10	d : 0.10	f : 0.08	g : 0.08	" : 0.06	! : 0.05	= : 0.03	o : 0.01	i : 0.01	h : 0.01	
c : 0.43	d : 0.10	f : 0.08	g : 0.08	b : 0.06	e : 0.06	! : 0.03	= : 0.03	[ : 0.01	o : 0.01	i : 0.01	" : 0.01	h : 0.01	
c : 0.29	o : 0.18	b : 0.13	d : 0.10	f : 0.08	e : 0.06	g : 0.05	[ : 0.01	i : 0.01	= : 0.01	h : 0.01	
c : 0.29	o : 0.27	n : 0.10	b : 0.08	d : 0.06	f : 0.05	e : 0.05	g : 0.03	i : 0.01	a : 0.01	
m : 0.43	o : 0.32	n : 0.12	l : 0.06	b : 0.01	c : 0.01	f : 0.01	
m : 0.43	o : 0.32	l : 0.12	n : 0.12	
m : 0.43	o : 0.31	l : 0.12	n : 0.12	a : 0.01	
m : 0.43	o : 0.31	n : 0.12	l : 0.05	c : 0.03	] : 0.01	g : 0.01	d : 0.01	
c : 0.39	o : 0.13	b : 0.10	d : 0.08	f : 0.08	e : 0.06	g : 0.05	= : 0.01	n : 0.01	i : 0.01	h : 0.01	
c : 0.41	b : 0.15	d : 0.10	f : 0.08	e : 0.06	g : 0.06	o : 0.05	= : 0.01	i : 0.01	h : 0.01	
c : 0.41	d : 0.10	] : 0.08	f : 0.08	e : 0.06	g : 0.06	b : 0.05	2 : 0.03	= : 0.01	i : 0.01	3 : 0.01	a : 0.01	h : 0.01	
] : 0.27	e : 0.13	d : 0.12	g : 0.10	f : 0.08	c : 0.08	2 : 0.05	3 : 0.05	a : 0.03	= : 0.01	i : 0.01	h : 0.01	
c : 0.24	e : 0.17	f : 0.13	g : 0.12	3 : 0.06	d : 0.06	2 : 0.03	] : 0.03	a : 0.03	= : 0.03	i : 0.01	b : 0.01	h : 0.01	
c : 0.24	f : 0.13	e : 0.12	g : 0.12	] : 0.10	3 : 0.06	d : 0.06	2 : 0.05	= : 0.03	i : 0.01	b : 0.01	h : 0.01	
c : 0.29	e : 0.12	g : 0.12	d : 0.12	] : 0.06	3 : 0.05	f : 0.05	2 : 0.03	= : 0.03	b : 0.03	4 : 0.01	i : 0.01	a : 0.01	h : 0.01	
c : 0.18	e : 0.13	] : 0.12	f : 0.08	b : 0.08	g : 0.08	d : 0.08	3 : 0.06	4 : 0.05	= : 0.03	i : 0.01	h : 0.01	2 : 0.01	
c : 0.20	d : 0.12	] : 0.10	f : 0.08	e : 0.08	2 : 0.06	g : 0.06	4 : 0.06	3 : 0.05	b : 0.05	i : 0.05	= : 0.03	
c : 0.18	d : 0.12	3 : 0.10	4 : 0.10	f : 0.08	2 : 0.06	e : 0.06	] : 0.06	g : 0.06	b : 0.05	= : 0.03	i : 0.03	
c : 0.20	3 : 0.15	d : 0.10	4 : 0.10	2 : 0.06	b : 0.06	f : 0.05	] : 0.05	e : 0.05	g : 0.05	= : 0.03	i : 0.03	a : 0.01	
3 : 0.15	c : 0.15	d : 0.12	] : 0.12	e : 0.08	f : 0.06	4 : 0.06	2 : 0.06	b : 0.03	= : 0.03	g : 0.03	i : 0.03	a : 0.01	
d : 0.24	c : 0.13	3 : 0.12	e : 0.08	f : 0.06	b : 0.06	] : 0.05	4 : 0.05	2 : 0.03	= : 0.03	a : 0.03	g : 0.03	i : 0.03	
d : 0.31	] : 0.13	e : 0.13	b : 0.06	c : 0.06	2 : 0.05	3 : 0.03	= : 0.03	a : 0.03	f : 0.03	i : 0.03	h : 0.01	4 : 0.01	g : 0.01	
d : 0.37	e : 0.13	] : 0.12	c : 0.10	f : 0.05	b : 0.03	3 : 0.03	2 : 0.03	i : 0.03	h : 0.01	= : 0.01	g : 0.01	: : 0.01	
d : 0.37	e : 0.20	f : 0.10	c : 0.08	g : 0.05	] : 0.05	i : 0.05	h : 0.01	= : 0.01	: : 0.01	b : 0.01	

#score	692.083273963676
#seq	58
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_CDS_m1_run2.txt

#BEAR
a[ffffffccc!!ddddoooooodddd]ccc]ffffff]a	chr9:139564526-139564752(+)$1	226	82	122	13.2381
[ggggggg!!a[ccc[bboooooobb]ccca22ggggggg	chr14:104165085-104165362(+)$1	277	80	120	16.2866
e!!ccc!!ccc"""a!!cccmmmmccc22a22ccc22ccc	chr1:33237064-33237306(+)$1	242	161	201	15.6932
=====[bb####gggggggooooooggggggg4444bb33	chr10:106014819-106015081(+)$1	262	36	76	15.1421
gggggg!!ccc"""a[ddddllldddd]accc4444gggg	chr5:179046285-179046541(-)$1	256	117	157	15.4877
==========[dddd!!cccmmmmccc22dddd]======	chr9:140172989-140173267(+)$1	278	108	148	15.4894
==!!ggggggg!!bb[cccoooooocccbb]ggggggg77	chr2:10952703-10953008(-)$1	305	61	101	16.6064
ccbb!!cccccc[bb[cccnnnnnccc22bb]ccc]ccc2	chr12:131357028-131357270(+)$1	242	105	145	16.8111
===========[ccc[cccnnnnnccc]ccc]========	chr22:20073963-20074192(+)$1	229	1	41	20.6718
c!!ddddffffff"""acccmmmmccc]a4444ffffff]	chr12:98989475-98989731(+)$1	256	107	147	13.5527
e[bb[==============nnnnn==============bb	chr16:23690179-23690478(+)$1	299	230	270	16.8874
gggg!!ccc==========oooooo==========]ccc6	chr11:236933-237215(+)$1	282	20	60	16.5932
iiiii[a[dddd!!a[cccnnnnnccc]a]dddd333a]i	chr17:76120140-76120391(-)$1	251	37	77	17.1838
fffffffffffccc[cccooooooccc]ccc]ffffff]f	chr8:145149917-145150179(+)$1	262	145	185	15.4440
===========[ccc[cccnnnnnccc]ccc]========	chr22:20073781-20074013(+)$1	232	183	223	20.6718
ggg$$$$$dddd[a[cccooooooccc]a]ddddgggggg	chr8:25315634-25315935(-)$1	301	4	44	14.7908
eee####bb!!ccc!!cccnnnnnccc22ccc22bb333e	chr22:45724185-45724453(+)$1	268	219	259	15.8498
"""ccc[bb[ccc[ccc[ccclllccc]ccc]ccc]bb]c	chr22:46505735-46506026(+)$1	291	236	276	15.3819
eeeeeeeee[a[a[bbcccooooooccc]bb]a]a22eee	chr7:44887467-44887753(-)$1	286	204	244	14.3377
DDD=========="""bboooooobb333==========E	chr9:32572921-32573195(-)$1	274	33	73	13.6493
ggggg[ccc!!bb!!ddddnnnnnddddbb22cccggggg	chr6:27775871-27776130(+)$1	259	146	186	14.1867
iiiiii"""eeeee[cccooooooccc]eeeee]iiiiii	chr16:18573219-18573483(-)$1	264	88	128	15.9319
e$$$$$==============lll==============eee	chr11:62293183-62293435(-)$1	252	167	207	15.1243
[eeeee"""ccc"""bbcccmmmmccc]bb22ccc4444e	chr10:133787326-133787549(-)$1	223	93	133	14.0216
eeebb[dddd"""ccccccnnnnnccc]ccc22dddd333	chr16:83841505-83841826(+)$1	321	265	305	15.7247
ccc[a[eeeee[a[bbcccooooooccc]bb]a]eeeee]	chr15:90776968-90777210(-)$1	242	65	105	14.8478
iiiiii[a!!eeeee[bbccclllccc]bb]eeeee]a]i	chr7:99686529-99686790(+)$1	261	164	204	14.1287
gccc[eeeee!!ccc[ddddllldddd]ccc22eeeee33	chr5:154135520-154135780(+)$1	260	125	165	13.4868
cffffff!!ccc[bb[cccnnnnnccc]bb]ccc22ffff	chr20:2819564-2819824(-)$1	260	27	67	15.7919
::===========bb[bboooooobb]bb4444=======	chr1:2125400-2125682(-)$1	282	157	197	14.5771
fffffffffffccc[cccooooooccc]ccc]ffffff]f	chr8:145149984-145150222(+)$1	238	78	118	15.4440
"""ggggggga"""bb[annnnna]bb333a]ggggggg3	chr11:62292787-62293027(-)$1	240	7	47	16.2858
===========[ccc[cccnnnnnccc]ccc]========	chr22:20073939-20074163(+)$1	224	25	65	20.6718
[a[ccc!!ffffff!!cccnnnnnccc22ffffff22ccc	chr19:18112127-18112448(+)$1	321	141	181	15.3931
d"""ccc[ccc[bb"""cccmmmmccc22bb]cccccc22	chr3:45730838-45731090(+)$1	252	36	76	14.9338
##bb!!dddd!!ccc####ammmma4444ccc4444dddd	chr22:19951478-19951735(+)$1	257	56	96	12.6653
$$$$gggggggccc[cccooooooccc]ccc]gggggggf	chr9:35102953-35103205(-)$1	252	93	133	17.2925
bbbb[ggggggg[ccc[bboooooobb]cccgggggggbb	chr5:130500723-130500981(-)$1	258	41	81	14.7660
==========="""bbrrrrrrrrrbb22===========	chr17:79977650-79977888(-)$1	238	124	164	15.5206
cbb[ggggggg!!ccc[cccmmmmccc]cccggggggg]b	chr9:99180180-99180411(-)$1	231	55	95	15.6985
=====bbccc!!gggggggnnnnnggggggg22ccc>>>>	chr6:10724701-10724965(+)$1	264	29	69	14.1191
e"""ccc[abb[bb!!cccoooooocccbbbb]a]ccc33	chr10:75579268-75579558(-)$1	290	137	177	15.4138
bbbbggggggg"""a!!bbnnnnnbb22aggggggg]bb]	chr8:124194893-124195201(+)$1	308	167	207	15.1552
ggggg!!bb####ccc[ccclllccc22ccc22bb22ggg	chr22:20073581-20073816(+)$1	235	175	215	15.0646
d[ffffffggggggg[cccnnnnnccc]ggggggg333ff	chr19:10406935-10407201(+)$1	266	95	135	16.6144
==========%%%%%%cccooooooccc==========dd	chr11:62300892-62301151(-)$1	259	202	242	14.9355
ddddiiiiiiiii[bba[annnnna]a]bb]iiiiiiiii	chr19:2270509-2270753(+)$1	244	111	151	15.6884
!ccc[ccc!!bb[bb[cccnnnnnccc]bb]bb22ccccc	chr19:1407603-1407893(+)$1	290	121	161	15.4614
ggggggccc[ccc[cccccclllccc22ccc]cccccc]g	chr2:54197725-54198044(-)$1	319	154	194	15.9996
===========[ccc[cccnnnnnccc]ccc]========	chr22:20073834-20074066(+)$1	232	130	170	20.6718
gg[ggggggg[a[bb[cccooooooccc]bb]a22ggggg	chr19:18547579-18547850(-)$1	271	116	156	17.0574
ggggggg[ggggggg[a!!bblllbb22a333gggggggg	chr22:19950914-19951240(+)$1	326	89	129	14.6819

#otherMatches

#Seq PSSM
CGUUUCCUGCAGAUGUGGAUGAAUGCAGUGCUAGGAGGGG	chr9:139564526-139564752(+)$1	226	82	122	13.2381
ACCCCUUCGGCACUGAUCGUGUAGGAACAGGAGGAGGGGG	chr14:104165085-104165362(+)$1	277	80	120	16.2866
GCUGCUUCGUCCUCCUCAGCUACUGCUUUGCAGAUUCAGC	chr1:33237064-33237306(+)$1	242	161	201	15.6932
GCGGUGGGAUACGGGGGGUCUCGACACCUCUCUGGGCCGU	chr10:106014819-106015081(+)$1	262	36	76	15.1421
UGUCCUUGGGUUGAAGGGUUGGAAAUCGUGCCAAAUGGGA	chr5:179046285-179046541(-)$1	256	117	157	15.4877
GUUGCAGGGAGGGCGACCUGUAUGCGGAGCGCCGUUCCUG	chr9:140172989-140173267(+)$1	278	108	148	15.4894
gcggccgccccUCGGACCACCGGACUGGCCUGGGGCGGGA	chr2:10952703-10953008(-)$1	305	61	101	16.6064
CCGCGAUGGCUGCGCAGGGAGAGCCCCAGGUCCAGUUCAA	chr12:131357028-131357270(+)$1	242	105	145	16.8111
AUGCUUGUCCCUUUGGCGGGAGUGUUGGUGACGGGGUAGG	chr22:20073963-20074192(+)$1	229	1	41	20.6718
ACACUGCUGUGGUUCCCCUGGAUUUAGUGAAAUGCCGUAU	chr12:98989475-98989731(+)$1	256	107	147	13.5527
UAUGUGCGGGGCCGCUUUUUGGGCAAGGGCGGCUUUGCCA	chr16:23690179-23690478(+)$1	299	230	270	16.8874
CCGCUCGGCGCCGGAAGUGAGUGAGCAUUUCCGGCAGCCA	chr11:236933-237215(+)$1	282	20	60	16.5932
GGCCUCCUCCUGCUCUGCCCCUGUGGCUGUCAGGCCUGAG	chr17:76120140-76120391(-)$1	251	37	77	17.1838
ccgggcgcgcgugcccggggUCUGCUGUGCAGCGCGCGUC	chr8:145149917-145150179(+)$1	262	145	185	15.4440
AUGCUUGUCCCUUUGGCGGGAGUGUUGGUGACGGGGUAGG	chr22:20073781-20074013(+)$1	232	183	223	20.6718
GGGUGUGGGACAGAGUGCGUGCGUGUGGUGUGUCCCCAAG	chr8:25315634-25315935(-)$1	301	4	44	14.7908
ggggaggccgaggugggaggauugcuugagcccaggaguu	chr22:45724185-45724453(+)$1	268	219	259	15.8498
CAUGGUGAGCACUGUAGGCUCUAGGAGGCUGAAGUCCUGG	chr22:46505735-46506026(+)$1	291	236	276	15.3819
gccgggggcacgggGCCUGGGAGAGCAGAGCGCGGAGGCC	chr7:44887467-44887753(-)$1	286	204	244	14.3377
UCGGCGUUCCCGCAAGGUCGCUUUGCAGAGCGGGAGCGCG	chr9:32572921-32573195(-)$1	274	33	73	13.6493
GCUCGCGCCAAGGCCAAGACCCGCUCUUCUCGGGCCGGGC	chr6:27775871-27776130(+)$1	259	146	186	14.1867
CCGGCGGUGGGUCUAGCUGGGGGAGGUCGGGCCAUGCUGG	chr16:18573219-18573483(-)$1	264	88	128	15.9319
CCAAAGUGGACAUUGAUGUCCCAGAUGUUAAUGUUCAGGG	chr11:62293183-62293435(-)$1	252	167	207	15.1243
CCCCAUCAGGCUCCUGGGUAGAACUGCACUUCAGCAAUAA	chr10:133787326-133787549(-)$1	223	93	133	14.0216
GGCGCCGGGCCAAGCCCUGCUGGACAGAGGCGCGCCCACC	chr16:83841505-83841826(+)$1	321	265	305	15.7247
UUGGCGGAGCUGUGCGCGCGGCGGGGCGAUGGGGGGCUCG	chr15:90776968-90777210(-)$1	242	65	105	14.8478
CGGGCCGUGCGGGGGUGGCUUCCGGAGACCUCCUUCAGGG	chr7:99686529-99686790(+)$1	261	164	204	14.1287
gcgcggggcgccgggACUUCGUGGAAGCCCCCCCGCCCAA	chr5:154135520-154135780(+)$1	260	125	165	13.4868
CAGACCCUGGCCUGGCAGGGUUCUCCUCCCUGGCAUGGGU	chr20:2819564-2819824(-)$1	260	27	67	15.7919
AGCGGCUCUGGGCCGAGCUACUGCGCACGGUGAGCCCGGA	chr1:2125400-2125682(-)$1	282	157	197	14.5771
ccgggcgcgcgugcccggggUCUGCUGUGCAGCGCGCGUC	chr8:145149984-145150222(+)$1	238	78	118	15.4440
AAUAUCAAAGCCCCCAAGAUCCCCAUGCCUGACUUUGAUU	chr11:62292787-62293027(-)$1	240	7	47	16.2858
AUGCUUGUCCCUUUGGCGGGAGUGUUGGUGACGGGGUAGG	chr22:20073939-20074163(+)$1	224	25	65	20.6718
GCGGCGGGGCGGCCACCCACUGGUUGGAGGGUCGCAGCGU	chr19:18112127-18112448(+)$1	321	141	181	15.3931
CAGGGUGACCGGUAGAGUUGUAGCCGAGGUggcggcgcgg	chr3:45730838-45731090(+)$1	252	36	76	14.9338
CCCAGAACCCUAAAGAAAACUGAUGAAUGCUUGUAUGGGU	chr22:19951478-19951735(+)$1	257	56	96	12.6653
AGGUCGCUGCGGCGGUGGGAAAUGCUGGCGCGCGCGGCGC	chr9:35102953-35103205(-)$1	252	93	133	17.2925
UCCGAGCCUCUCCUCUGGCCGCCGCGCGGGAGAGAGGCCG	chr5:130500723-130500981(-)$1	258	41	81	14.7660
CACCUGCACUUCAAGGAUGACAAGACCAAAGGUGCGGGUG	chr17:79977650-79977888(-)$1	238	124	164	15.5206
AGUGCGGCCCGGGGCCGCCGGAGCUGGGGGUCGGGCCGGG	chr9:99180180-99180411(-)$1	231	55	95	15.6985
uuggacacaCUUCUUUCUGACUGCUGGAGAGCUGUGCUUU	chr6:10724701-10724965(+)$1	264	29	69	14.1191
ccugcccugGCUGGCUAGCUGCCCCGCUCCGCACUGGGAA	chr10:75579268-75579558(-)$1	290	137	177	15.4138
GCCAGCCUCCCCCAGCACCACCCAGGGACGGGAGGCAUGA	chr8:124194893-124195201(+)$1	308	167	207	15.1552
UGUAGUGGCCACAGCCCGCGCACCGCCCGGCACGCACCUG	chr22:20073581-20073816(+)$1	235	175	215	15.0646
CGCCGUgggcggcgcggcggggggcgcggcgcugcuggcc	chr19:10406935-10407201(+)$1	266	95	135	16.6144
UUUGGUGUCUCAACAGGGCGUGAGGGCCAGACACCAAAGG	chr11:62300892-62301151(-)$1	259	202	242	14.9355
GUUGUGGGGGAGCCCGCGGGGUCUCGGUCGAGCUUUCCCG	chr19:2270509-2270753(+)$1	244	111	151	15.6884
AGCGAGCGAGGAGGCCCGGGAGCGCCGAGCGUCGCCGCCG	chr19:1407603-1407893(+)$1	290	121	161	15.4614
Agcccccggagccgggcgggcgucccgagccgggcccgcg	chr2:54197725-54198044(-)$1	319	154	194	15.9996
AUGCUUGUCCCUUUGGCGGGAGUGUUGGUGACGGGGUAGG	chr22:20073834-20074066(+)$1	232	130	170	20.6718
GGAGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUC	chr19:18547579-18547850(-)$1	271	116	156	17.0574
GGAGAGGUGGGGGGCCGUGCCUGGGGAUCCAAGUUCCCCU	chr22:19950914-19951240(+)$1	326	89	129	14.6819

#DB
(.(((((((((..((((......)))).))).)))))).)	chr9:139564526-139564752(+)$1	1	82	122	13.2381
.(((((((..(.(((.((......)).))))..)))))))	chr14:104165085-104165362(+)$1	1	80	120	16.2866
(..(((..(((...(..(((....)))..)..)))..)))	chr1:33237064-33237306(+)$1	1	161	201	15.6932
(((((.((....(((((((......)))))))....))..	chr10:106014819-106015081(+)$1	1	36	76	15.1421
((((((..(((...(.((((...)))).))))....))))	chr5:179046285-179046541(-)$1	1	117	157	15.4877
((((((((((.((((..(((....)))..)))).))))))	chr9:140172989-140173267(+)$1	1	108	148	15.4894
((..(((((((..((.(((......))))).)))))))..	chr2:10952703-10953008(-)$1	1	61	101	16.6064
((((..((((((.((.(((.....)))..)).))).))).	chr12:131357028-131357270(+)$1	1	105	145	16.8111
(((((((((((.(((.(((.....))).))).))))))))	chr22:20073963-20074192(+)$1	1	1	41	20.6718
(..((((((((((...((((....))).)....)))))).	chr12:98989475-98989731(+)$1	1	107	147	13.5527
(.((.((((((((((((((.....))))))))))))))))	chr16:23690179-23690478(+)$1	1	230	270	16.8874
((((..(((((((((((((......)))))))))).))).	chr11:236933-237215(+)$1	1	20	60	16.5932
(((((.(.((((..(.(((.....))).).))))...).)	chr17:76120140-76120391(-)$1	1	37	77	17.1838
((((((((((((((.(((......))).))).)))))).)	chr8:145149917-145150179(+)$1	1	145	185	15.4440
(((((((((((.(((.(((.....))).))).))))))))	chr22:20073781-20074013(+)$1	1	183	223	20.6718
(((.....((((.(.(((......))).).))))))))))	chr8:25315634-25315935(-)$1	1	4	44	14.7908
(((....((..(((..(((.....)))..)))..))...)	chr22:45724185-45724453(+)$1	1	219	259	15.8498
...(((.((.(((.(((.(((...))).))).))).)).)	chr22:46505735-46506026(+)$1	1	236	276	15.3819
))))(((((.(.(.(((((......))).)).).)..)))	chr7:44887467-44887753(-)$1	1	204	244	14.3377
(((((((((((((...((......))...))))))))))(	chr9:32572921-32573195(-)$1	1	33	73	13.6493
(((((.(((..((..((((.....))))))..))))))))	chr6:27775871-27776130(+)$1	1	146	186	14.1867
((((((...(((((.(((......))).))))).))))))	chr16:18573219-18573483(-)$1	1	88	128	15.9319
(.....((((((((((((((...)))))))))))))))))	chr11:62293183-62293435(-)$1	1	167	207	15.1243
.(((((...(((...(((((....))).))..)))....)	chr10:133787326-133787549(-)$1	1	93	133	14.0216
(((((.((((...((((((.....))).)))..))))...	chr16:83841505-83841826(+)$1	1	265	305	15.7247
(((.(.(((((.(.(((((......))).)).).))))).	chr15:90776968-90777210(-)$1	1	65	105	14.8478
((((((.(..(((((.(((((...))).)).))))).).)	chr7:99686529-99686790(+)$1	1	164	204	14.1287
((((.(((((..(((.((((...)))).)))..)))))..	chr5:154135520-154135780(+)$1	1	125	165	13.4868
)((((((..(((.((.(((.....))).)).)))..))))	chr20:2819564-2819824(-)$1	1	27	67	15.7919
..(((((((((((((.((......)).))....)))))))	chr1:2125400-2125682(-)$1	1	157	197	14.5771
((((((((((((((.(((......))).))).)))))).)	chr8:145149984-145150222(+)$1	1	78	118	15.4440
...((((((((...((.(.....).))...).))))))).	chr11:62292787-62293027(-)$1	1	7	47	16.2858
(((((((((((.(((.(((.....))).))).))))))))	chr22:20073939-20074163(+)$1	1	25	65	20.6718
.(.(((..((((((..(((.....)))..))))))..)))	chr19:18112127-18112448(+)$1	1	141	181	15.3931
(...(((.(((.((...(((....)))..)).))))))..	chr3:45730838-45731090(+)$1	1	36	76	14.9338
..((..((((..(((....(....)....)))....))))	chr22:19951478-19951735(+)$1	1	56	96	12.6653
....((((((((((.(((......))).))).))))))))	chr9:35102953-35103205(-)$1	1	93	133	17.2925
((((.(((((((.(((.((......)).))))))))))))	chr5:130500723-130500981(-)$1	1	41	81	14.7660
(((((((((((...((.........))..)))))))))))	chr17:79977650-79977888(-)$1	1	124	164	15.5206
(((.(((((((..(((.(((....))).)))))))))).)	chr9:99180180-99180411(-)$1	1	55	95	15.6985
((((((((((..(((((((.....)))))))..)))....	chr6:10724701-10724965(+)$1	1	29	69	14.1191
(...(((.(((.((..(((......))))))).).)))..	chr10:75579268-75579558(-)$1	1	137	177	15.4138
(((((((((((...(..((.....))..)))))))).)).	chr8:124194893-124195201(+)$1	1	167	207	15.1552
(((((..((....(((.(((...)))..)))..))..)))	chr22:20073581-20073816(+)$1	1	175	215	15.0646
(.(((((((((((((.(((.....))).)))))))...))	chr19:10406935-10407201(+)$1	1	95	135	16.6144
((((((((((......(((......)))))))))))))))	chr11:62300892-62301151(-)$1	1	202	242	14.9355
))))(((((((((.(((.(.....).).)).)))))))))	chr19:2270509-2270753(+)$1	1	111	151	15.6884
.(((.(((..((.((.(((.....))).)).))..)))))	chr19:1407603-1407893(+)$1	1	121	161	15.4614
(((((((((.(((.((((((...)))..))).)))))).)	chr2:54197725-54198044(-)$1	1	154	194	15.9996
(((((((((((.(((.(((.....))).))).))))))))	chr22:20073834-20074066(+)$1	1	130	170	20.6718
((.(((((((.(.((.(((......))).)).)..)))))	chr19:18547579-18547850(-)$1	1	116	156	17.0574
(((((((.(((((((.(..((...))..)...))))))))	chr22:19950914-19951240(+)$1	1	89	129	14.6819

#PSSM
= : 0.19	g : 0.17	e : 0.13	c : 0.09	[ : 0.05	i : 0.05	d : 0.05	f : 0.03	" : 0.03	b : 0.03	a : 0.01	D : 0.01	: : 0.01	# : 0.01	$ : 0.01	! : 0.01	
= : 0.19	g : 0.17	c : 0.07	e : 0.07	" : 0.07	[ : 0.05	i : 0.05	f : 0.05	b : 0.05	! : 0.03	$ : 0.03	D : 0.01	: : 0.01	a : 0.01	# : 0.01	d : 0.01	
= : 0.19	g : 0.15	b : 0.11	f : 0.09	e : 0.07	" : 0.07	! : 0.05	i : 0.05	c : 0.05	$ : 0.03	[ : 0.03	D : 0.01	d : 0.01	
= : 0.21	g : 0.17	b : 0.11	f : 0.09	c : 0.09	i : 0.05	$ : 0.05	d : 0.03	e : 0.03	[ : 0.03	" : 0.03	! : 0.01	# : 0.01	
g : 0.23	= : 0.21	f : 0.09	c : 0.09	[ : 0.07	i : 0.07	! : 0.05	$ : 0.03	e : 0.03	d : 0.01	# : 0.01	b : 0.01	a : 0.01	
g : 0.21	= : 0.19	c : 0.11	f : 0.09	[ : 0.09	! : 0.07	e : 0.05	i : 0.05	$ : 0.03	d : 0.01	# : 0.01	b : 0.01	
= : 0.21	g : 0.17	c : 0.13	f : 0.09	! : 0.07	d : 0.05	e : 0.05	b : 0.03	[ : 0.03	" : 0.03	a : 0.01	$ : 0.01	# : 0.01	i : 0.01	
= : 0.21	g : 0.15	c : 0.11	f : 0.09	! : 0.07	b : 0.07	[ : 0.07	e : 0.05	" : 0.03	d : 0.03	$ : 0.01	a : 0.01	i : 0.01	
= : 0.21	c : 0.17	g : 0.17	! : 0.07	f : 0.07	d : 0.07	b : 0.05	e : 0.05	" : 0.03	# : 0.01	a : 0.01	i : 0.01	
= : 0.23	g : 0.17	c : 0.15	! : 0.09	f : 0.07	d : 0.07	[ : 0.05	e : 0.05	# : 0.03	b : 0.01	i : 0.01	
= : 0.19	c : 0.17	g : 0.13	! : 0.09	f : 0.07	a : 0.05	e : 0.05	# : 0.03	[ : 0.03	d : 0.03	b : 0.03	" : 0.01	% : 0.01	i : 0.01	
[ : 0.17	c : 0.17	! : 0.11	" : 0.11	= : 0.09	d : 0.05	g : 0.05	# : 0.03	f : 0.03	b : 0.03	e : 0.03	% : 0.01	i : 0.01	a : 0.01	
c : 0.24	" : 0.13	[ : 0.11	= : 0.09	! : 0.07	g : 0.07	b : 0.05	f : 0.03	a : 0.03	e : 0.03	d : 0.01	# : 0.01	% : 0.01	i : 0.01	
c : 0.28	" : 0.15	b : 0.15	[ : 0.09	g : 0.07	= : 0.05	d : 0.03	! : 0.03	e : 0.03	a : 0.01	f : 0.01	% : 0.01	
c : 0.24	b : 0.21	[ : 0.09	a : 0.07	g : 0.07	" : 0.07	! : 0.07	= : 0.05	d : 0.03	e : 0.01	% : 0.01	
[ : 0.32	c : 0.21	! : 0.11	b : 0.11	" : 0.05	= : 0.05	d : 0.03	g : 0.03	# : 0.01	% : 0.01	
c : 0.48	b : 0.09	d : 0.07	[ : 0.07	! : 0.05	a : 0.05	= : 0.05	g : 0.03	" : 0.01	# : 0.01	r : 0.01	
c : 0.59	b : 0.11	d : 0.05	= : 0.05	g : 0.03	[ : 0.03	o : 0.01	a : 0.01	# : 0.01	r : 0.01	! : 0.01	
c : 0.53	o : 0.17	d : 0.05	= : 0.05	g : 0.03	b : 0.03	n : 0.01	# : 0.01	r : 0.01	a : 0.01	! : 0.01	
o : 0.34	n : 0.34	c : 0.19	d : 0.03	= : 0.01	a : 0.01	r : 0.01	b : 0.01	
o : 0.34	n : 0.34	m : 0.13	l : 0.09	c : 0.03	r : 0.01	b : 0.01	
o : 0.34	n : 0.34	l : 0.15	m : 0.13	r : 0.01	
o : 0.34	n : 0.34	l : 0.15	m : 0.13	r : 0.01	
o : 0.32	n : 0.32	m : 0.13	d : 0.05	l : 0.05	c : 0.03	= : 0.01	a : 0.01	r : 0.01	
c : 0.51	o : 0.17	b : 0.09	d : 0.07	= : 0.03	a : 0.03	] : 0.01	r : 0.01	g : 0.01	
c : 0.63	b : 0.15	d : 0.07	= : 0.05	g : 0.03	4 : 0.01	] : 0.01	
c : 0.59	d : 0.07	2 : 0.07	= : 0.05	b : 0.05	] : 0.03	g : 0.03	3 : 0.01	4 : 0.01	a : 0.01	
] : 0.46	2 : 0.21	c : 0.13	= : 0.05	g : 0.03	3 : 0.03	d : 0.01	b : 0.01	4 : 0.01	
c : 0.30	b : 0.17	2 : 0.13	a : 0.11	= : 0.07	g : 0.05	] : 0.05	3 : 0.03	e : 0.01	4 : 0.01	
c : 0.36	b : 0.24	= : 0.11	g : 0.07	4 : 0.03	] : 0.03	3 : 0.03	a : 0.01	d : 0.01	e : 0.01	f : 0.01	
c : 0.34	b : 0.11	= : 0.11	] : 0.09	g : 0.07	2 : 0.05	d : 0.05	a : 0.03	4 : 0.03	e : 0.01	f : 0.01	3 : 0.01	
] : 0.30	2 : 0.15	g : 0.11	= : 0.11	c : 0.07	d : 0.05	4 : 0.03	e : 0.03	b : 0.03	f : 0.01	i : 0.01	3 : 0.01	
= : 0.19	c : 0.15	g : 0.15	2 : 0.11	4 : 0.09	f : 0.07	d : 0.05	a : 0.05	e : 0.03	] : 0.01	i : 0.01	b : 0.01	
= : 0.21	g : 0.17	c : 0.17	f : 0.09	] : 0.07	4 : 0.05	d : 0.05	2 : 0.05	e : 0.03	a : 0.01	b : 0.01	i : 0.01	
= : 0.23	g : 0.19	c : 0.15	f : 0.09	4 : 0.05	e : 0.05	2 : 0.05	b : 0.03	i : 0.03	3 : 0.01	a : 0.01	d : 0.01	] : 0.01	
g : 0.21	= : 0.21	2 : 0.09	c : 0.09	f : 0.07	4 : 0.07	] : 0.05	e : 0.05	3 : 0.03	i : 0.03	b : 0.01	d : 0.01	
g : 0.21	= : 0.21	c : 0.11	f : 0.09	2 : 0.07	3 : 0.05	b : 0.03	i : 0.03	d : 0.03	e : 0.03	] : 0.03	4 : 0.01	> : 0.01	
g : 0.23	= : 0.19	c : 0.15	f : 0.09	e : 0.07	b : 0.05	3 : 0.05	a : 0.03	i : 0.03	4 : 0.01	d : 0.01	> : 0.01	
g : 0.17	] : 0.15	= : 0.15	c : 0.09	3 : 0.09	f : 0.05	b : 0.05	e : 0.05	i : 0.03	d : 0.03	7 : 0.01	4 : 0.01	2 : 0.01	> : 0.01	
g : 0.15	= : 0.13	3 : 0.09	f : 0.09	c : 0.07	i : 0.07	e : 0.07	] : 0.05	b : 0.05	2 : 0.03	d : 0.03	a : 0.01	7 : 0.01	6 : 0.01	E : 0.01	> : 0.01	

#score	817.1278874362634
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_transcript_m1_run2.txt

#BEAR
eeeee"""cccmmmmccc]eeeee]c	chr19:10220339-10220549(+)$1	210	109	135	8.7234
eeeee!!eeeeellleeeee22eeee	chr5:137896664-137896866(-)$1	202	44	70	13.2078
[ccc[a[ddddnnnnndddd22a]cc	chr16:85689999-85690336(+)$1	337	149	175	9.9712
:ccc"""ddddmmmmdddd4444ccc	chr2:203141052-203141317(+)$1	265	115	141	8.3418
ggggg####cccnnnnnccc333ggg	chr19:3982436-3982662(-)$1	226	113	139	9.1982
fffff[eeeeemmmmeeeee]fffff	chr1:984893-985170(+)$1	277	66	92	8.4620
"""ddddaooooooa]dddd22eeee	chr1:28905192-28905433(-)$1	241	208	234	7.8034
ff!!bb[ddddllldddd]bb22fff	chr6:31802937-31803147(+)$1	210	132	158	8.3265
===####eeeeemmmmeeeee4444=	chr7:45144241-45144538(-)$1	297	9	35	9.2878
eeeee[dddd[ammmmadddd]eeee	chr17:2232359-2232588(-)$1	229	135	161	9.1687
ff!!ccc!!cccnnnnnccc22ccc2	chr17:16342770-16343036(+)$1	266	199	225	8.4660
eeeee!!eeeeellleeeee22eeee	chr5:137896692-137896899(-)$1	207	77	103	13.2078
eeccc[ccc[bblllbb]ccc]ccc3	chr17:27047463-27047725(+)$1	262	36	62	7.8118
gggg[bb[ddddlllddddbbggggg	chr6:133136352-133136583(+)$1	231	191	217	8.0875
:eeeee[eeeeellleeeee]eeeee	chr2:203142732-203142979(+)$1	247	11	37	10.4608
eeebb"""cccnnnnnccc333bb]e	chr19:10220349-10220572(+)$1	223	18	44	8.9385
hhhhhh[eeeeellleeeee]hhhhh	chr22:23522678-23522941(+)$1	263	154	180	8.6059
ccc"""fffffflllffffff22ccc	chr5:647970-648252(+)$1	282	125	151	8.2049
eeeee!!eeeeellleeeee22eeee	chr5:137896666-137896876(-)$1	210	54	80	13.2078
neeeeea]dddd]a]eeeee22ccc]	chr1:1284370-1284623(-)$1	253	115	141	7.6560
c[eeeeeccc[ammmmaccc]eeeee	chr1:234744798-234745071(-)$1	273	215	241	8.3797
b[eeeeeddddnnnnndddd22eeee	chr17:27049499-27049711(+)$1	212	13	39	10.0694
dddd"""eeeeellleeeee]dddd5	chrX:20154220-20154509(-)$1	289	22	48	9.4907
eeeee!!eeeeellleeeee22eeee	chr5:137896676-137896892(-)$1	216	70	96	13.2078
eeeeegggggggmmmmggggggg333	chr12:123994742-123995032(-)$1	290	192	218	7.4604
ff!!bb[ddddllldddd]bb22fff	chr6:31802947-31803177(+)$1	230	122	148	8.3265
ffffeeeeeooooooeeeee333fff	chr8:1780087-1780376(+)$1	289	54	80	9.5532
ddddddddcccooooooccc22dddd	chr16:89023319-89023608(-)$1	289	30	56	8.1776

#otherMatches

#Seq PSSM
ACAGCACUUCUGCUGAGACGCUGUGA	chr19:10220339-10220549(+)$1	210	109	135	8.7234
GUGCAUCUCUUUGACAAAGAUUUGUG	chr5:137896664-137896866(-)$1	202	44	70	13.2078
AGCUGCUGGCCGCCAAGGCCCUGGAG	chr16:85689999-85690336(+)$1	337	149	175	9.9712
UGAUGUAUUCUUCUUGGAACUGAAUC	chr2:203141052-203141317(+)$1	265	115	141	8.3418
CUUCACUUUGACCAGAUGUCUACUGA	chr19:3982436-3982662(-)$1	226	113	139	9.1982
CCUUCGUGGGCGCCGGCCUGAGGGGG	chr1:984893-985170(+)$1	277	66	92	8.4620
UUAGUAACACAAUGGCUUACACUUCC	chr1:28905192-28905433(-)$1	241	208	234	7.8034
GUGUCGCUGAUGCCAUCACCGCAGCG	chr6:31802937-31803147(+)$1	210	132	158	8.3265
GGGAUAAGUUUGGCUGUGGACAGUGC	chr7:45144241-45144538(-)$1	297	9	35	9.2878
CAGUGAUGCAACUUCUGUGUGAUACU	chr17:2232359-2232588(-)$1	229	135	161	9.1687
UAAGAUUGCGUACCCACUGCAGAGUG	chr17:16342770-16343036(+)$1	266	199	225	8.4660
GUGCAUCUCUUUGACAAAGAUUUGUG	chr5:137896692-137896899(-)$1	207	77	103	13.2078
AGUGCUACUUUGUUUCAUAGUCGUAU	chr17:27047463-27047725(+)$1	262	36	62	7.8118
UUAUACUUAUCUGGCAGAUAGAUGAG	chr6:133136352-133136583(+)$1	231	191	217	8.0875
AGCUUGCUUUUUUGAAAAAAUUAAGU	chr2:203142732-203142979(+)$1	247	11	37	10.4608
UGGACUUCCGCCACUAGUGAGUGUCC	chr19:10220349-10220572(+)$1	223	18	44	8.9385
GGCCGUGGCCAGAGUCUGGCGGCGGC	chr22:23522678-23522941(+)$1	263	154	180	8.6059
GCCGGACUGGGUCACACCCAGAAGGC	chr5:647970-648252(+)$1	282	125	151	8.2049
GUGCAUCUCUUUGACAAAGAUUUGUG	chr5:137896666-137896876(-)$1	210	54	80	13.2078
gcgccccgcguccgagccccgggccg	chr1:1284370-1284623(-)$1	253	115	141	7.6560
CUCGGCUCUGACUUCGGCAGCAGCCG	chr1:234744798-234745071(-)$1	273	215	241	8.3797
CACUUGAGGUUGUAAGAGCCCUUCAA	chr17:27049499-27049711(+)$1	212	13	39	10.0694
AGCCAAAUCUGAGCAUCAGAAGGCUU	chrX:20154220-20154509(-)$1	289	22	48	9.4907
GUGCAUCUCUUUGACAAAGAUUUGUG	chr5:137896676-137896892(-)$1	216	70	96	13.2078
CCCAGCACUGCUCUGCAGCAGUGUCC	chr12:123994742-123995032(-)$1	290	192	218	7.4604
GUGUCGCUGAUGCCAUCACCGCAGCG	chr6:31802947-31803177(+)$1	230	122	148	8.3265
UGGUGCCCGAGCCUGUGGGUGUGGCC	chr8:1780087-1780376(+)$1	289	54	80	9.5532
AGCAACCAAUCUCGUGUGAUGAUGGU	chr16:89023319-89023608(-)$1	289	30	56	8.1776

#DB
(((((...(((....))).))))).)	chr19:10220339-10220549(+)$1	1	109	135	8.7234
(((((..(((((...)))))..))))	chr5:137896664-137896866(-)$1	1	44	70	13.2078
.(((.(.((((.....))))..).))	chr16:85689999-85690336(+)$1	1	149	175	9.9712
.(((...((((....))))....)))	chr2:203141052-203141317(+)$1	1	115	141	8.3418
(((((....(((.....)))...)))	chr19:3982436-3982662(-)$1	1	113	139	9.1982
(((((.(((((....))))).)))))	chr1:984893-985170(+)$1	1	66	92	8.4620
...(((((......).))))..))))	chr1:28905192-28905433(-)$1	1	208	234	7.8034
((..((.((((...)))).))..)))	chr6:31802937-31803147(+)$1	1	132	158	8.3265
(((....(((((....)))))....)	chr7:45144241-45144538(-)$1	1	9	35	9.2878
(((((.((((.(....))))).))))	chr17:2232359-2232588(-)$1	1	135	161	9.1687
((..(((..(((.....)))..))).	chr17:16342770-16343036(+)$1	1	199	225	8.4660
(((((..(((((...)))))..))))	chr5:137896692-137896899(-)$1	1	77	103	13.2078
(((((.(((.((...)).))).))).	chr17:27047463-27047725(+)$1	1	36	62	7.8118
((((.((.((((...)))))))))))	chr6:133136352-133136583(+)$1	1	191	217	8.0875
.(((((.(((((...))))).)))))	chr2:203142732-203142979(+)$1	1	11	37	10.4608
(((((...(((.....)))...)).)	chr19:10220349-10220572(+)$1	1	18	44	8.9385
((((((.(((((...))))).)))))	chr22:23522678-23522941(+)$1	1	154	180	8.6059
(((...((((((...))))))..)))	chr5:647970-648252(+)$1	1	125	151	8.2049
(((((..(((((...)))))..))))	chr5:137896666-137896876(-)$1	1	54	80	13.2078
.)))))).)))).).)))))..))).	chr1:1284370-1284623(-)$1	1	115	141	7.6560
(.((((((((.(....)))).)))))	chr1:234744798-234745071(-)$1	1	215	241	8.3797
(.(((((((((.....))))..))))	chr17:27049499-27049711(+)$1	1	13	39	10.0694
((((...(((((...))))).)))).	chrX:20154220-20154509(-)$1	1	22	48	9.4907
(((((..(((((...)))))..))))	chr5:137896676-137896892(-)$1	1	70	96	13.2078
((((((((((((....)))))))...	chr12:123994742-123995032(-)$1	1	192	218	7.4604
((..((.((((...)))).))..)))	chr6:31802947-31803177(+)$1	1	122	148	8.3265
(((((((((......)))))...)))	chr8:1780087-1780376(+)$1	1	54	80	9.5532
(((((((((((......)))..))))	chr16:89023319-89023608(-)$1	1	30	56	8.1776

#PSSM
e : 0.32	f : 0.17	: : 0.07	g : 0.07	c : 0.07	d : 0.07	[ : 0.03	" : 0.03	= : 0.03	h : 0.03	n : 0.03	b : 0.03	
e : 0.39	f : 0.17	c : 0.10	g : 0.07	[ : 0.07	d : 0.07	" : 0.03	= : 0.03	h : 0.03	
e : 0.42	c : 0.14	! : 0.10	g : 0.07	f : 0.07	d : 0.07	" : 0.03	= : 0.03	h : 0.03	
e : 0.39	c : 0.10	d : 0.10	! : 0.10	g : 0.07	f : 0.07	# : 0.03	b : 0.03	h : 0.03	" : 0.03	
e : 0.42	" : 0.10	b : 0.10	[ : 0.07	d : 0.07	c : 0.07	g : 0.03	f : 0.03	# : 0.03	h : 0.03	
" : 0.17	e : 0.17	! : 0.14	[ : 0.10	b : 0.10	# : 0.07	d : 0.07	a : 0.03	c : 0.03	h : 0.03	g : 0.03	
[ : 0.17	" : 0.14	! : 0.14	e : 0.14	d : 0.10	# : 0.07	c : 0.07	b : 0.03	f : 0.03	a : 0.03	g : 0.03	
e : 0.35	d : 0.24	" : 0.07	c : 0.07	# : 0.03	a : 0.03	! : 0.03	[ : 0.03	f : 0.03	] : 0.03	g : 0.03	
e : 0.35	d : 0.28	c : 0.17	# : 0.03	o : 0.03	! : 0.03	f : 0.03	g : 0.03	
e : 0.32	d : 0.28	c : 0.21	o : 0.07	[ : 0.03	f : 0.03	g : 0.03	
e : 0.32	d : 0.24	c : 0.17	o : 0.07	[ : 0.07	b : 0.03	f : 0.03	g : 0.03	
e : 0.28	m : 0.10	n : 0.10	o : 0.10	c : 0.07	l : 0.07	a : 0.07	d : 0.07	b : 0.03	f : 0.03	g : 0.03	
l : 0.42	m : 0.24	n : 0.17	o : 0.10	] : 0.03	
l : 0.42	m : 0.24	n : 0.17	o : 0.10	a : 0.03	
l : 0.35	m : 0.24	n : 0.17	d : 0.07	o : 0.07	a : 0.03	] : 0.03	
e : 0.35	n : 0.17	d : 0.14	m : 0.14	c : 0.03	] : 0.03	b : 0.03	f : 0.03	o : 0.03	
e : 0.39	d : 0.24	c : 0.07	n : 0.07	a : 0.07	b : 0.03	f : 0.03	g : 0.03	o : 0.03	
e : 0.39	d : 0.28	c : 0.21	] : 0.03	f : 0.03	g : 0.03	
e : 0.39	d : 0.21	c : 0.21	] : 0.10	f : 0.03	g : 0.03	
e : 0.42	c : 0.17	d : 0.14	b : 0.10	4 : 0.03	3 : 0.03	f : 0.03	g : 0.03	
2 : 0.35	] : 0.17	3 : 0.10	b : 0.10	e : 0.07	4 : 0.03	d : 0.03	c : 0.03	f : 0.03	g : 0.03	
2 : 0.46	e : 0.10	3 : 0.10	4 : 0.07	] : 0.07	g : 0.07	f : 0.03	h : 0.03	d : 0.03	
e : 0.35	2 : 0.10	c : 0.10	4 : 0.07	3 : 0.07	g : 0.07	d : 0.07	a : 0.03	f : 0.03	b : 0.03	h : 0.03	
e : 0.35	c : 0.17	f : 0.14	g : 0.07	d : 0.07	] : 0.03	4 : 0.03	b : 0.03	h : 0.03	3 : 0.03	
e : 0.32	c : 0.21	f : 0.14	] : 0.07	g : 0.07	d : 0.07	4 : 0.03	h : 0.03	3 : 0.03	
e : 0.35	c : 0.14	f : 0.14	g : 0.07	3 : 0.07	= : 0.03	2 : 0.03	h : 0.03	] : 0.03	5 : 0.03	d : 0.03	

#score	261.8045012293713
#seq	28
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_CDS_m3_run2.txt

#BEAR
eeeerrrrrrrrreeeee	chr17:45755311-45755539(+)$1	228	186	204	9.8578
cc[cccpppppppccccc	chr12:104341309-104341527(+)$1	218	42	60	13.5638
[a[cccpppppppccc]a	chr14:24035133-24035392(-)$1	259	57	75	13.8178
####bbpppppppbbccc	chr1:53370606-53370864(-)$1	258	161	179	11.8814
[eeeeepppppppeeeee	chr14:23538691-23538929(-)$1	238	92	110	13.0214
ffffffpppppppfffff	chr2:70457789-70458095(-)$1	306	269	287	12.1047
ddddbbpppppppbb]dd	chr8:618602-618873(-)$1	271	109	127	11.4031
[bbcccpppppppccc]b	chr17:79969351-79969576(+)$1	225	115	133	12.9719
bb[bbrrrrrrrrrbb]b	chr12:69218291-69218542(+)$1	251	160	178	8.8292
!a[cccpppppppccca2	chr11:70644448-70644751(-)$1	303	81	99	13.4926
d[ddddpppppppddddd	chr2:61697693-61697962(-)$1	269	83	101	12.1711
ggggggpppppppggggg	chr12:104332088-104332337(+)$1	249	23	41	13.1064
eeee[apppppppa]eee	chr20:42086987-42087244(+)$1	257	140	158	12.7996
cc[cccpppppppccc22	chr12:57499150-57499421(-)$1	271	156	174	13.3276
bb[cccpppppppccc]b	chr16:75270541-75270835(-)$1	294	157	175	13.1851
2bbcccpppppppccc::	chr17:45755339-45755557(+)$1	218	188	206	10.6288
ccc[bbpppppppbbccc	chr19:15763262-15763536(+)$1	274	8	26	12.0746
hhhhhhppppppphhhhh	chr14:103568401-103568671(+)$1	270	14	32	11.4283
iiiiiipppppppiiiii	chr11:64681220-64681494(-)$1	274	249	267	13.1623
fffcccpppppppccc33	chr20:4843382-4843647(-)$1	265	55	73	13.3573
bb[cccpppppppccc33	chr6:158487527-158487774(+)$1	247	162	180	13.4556
:eeeeerrrrrrrrreee	chr3:49051298-49051599(+)$1	301	97	115	9.2141
bbddddpppppppdddd]	chr16:15127067-15127357(+)$1	290	185	203	12.1395
ffffrrrrrrrrrfffff	chr6:31698535-31698810(-)$1	275	244	262	9.2175
ggggggpppppppggggg	chr12:7260740-7261023(-)$1	283	124	142	13.1064
[eeeeerrrrrrrrreee	chr4:1805370-1805601(+)$1	231	29	47	10.2198
ggggggrrrrrrrrrggg	chr17:79969318-79969551(+)$1	233	65	83	10.2734
$$$cccpppppppccc55	chr12:104341060-104341309(+)$1	249	144	162	11.1377
eeeerrrrrrrrreeeee	chr11:129991525-129991804(+)$1	279	56	74	9.8578
eeeeerrrrrrrrreeee	chr6:144837848-144838123(+)$1	275	195	213	10.0340
f[ddddpppppppddddf	chr20:17930883-17931147(-)$1	264	237	255	12.3104
ggggggpppppppggggg	chr6:132199584-132199855(+)$1	271	176	194	13.1064
!eeeeepppppppeeeee	chr17:79954214-79954484(+)$1	270	214	232	12.9995
cc[cccpppppppccc]c	chr3:66023530-66023816(-)$1	286	104	122	13.7219
:eeeeepppppppeeeee	chr5:176516793-176517026(+)$1	233	138	156	12.0156
ggggggrrrrrrrrrggg	chr2:27448985-27449246(+)$1	261	138	156	10.2734
c[ddddpppppppddddc	chr2:233740584-233740872(+)$1	288	120	138	12.4643
ddddrrrrrrrrrdddd]	chr9:117062804-117063053(+)$1	249	149	167	9.2810
ggggggpppppppggggg	chr14:74759762-74760043(-)$1	281	139	157	13.1064
[eeeeerrrrrrrrreee	chr1:20811675-20811970(-)$1	295	260	278	10.2198
iiiiiipppppppiiiii	chr1:12677133-12677386(-)$1	253	89	107	13.1623

#otherMatches

#Seq PSSM
AUACUUAGAGGUUGUAUU	chr17:45755311-45755539(+)$1	228	186	204	9.8578
GCUAGGUUUUUUUUCUGC	chr12:104341309-104341527(+)$1	218	42	60	13.5638
UCCCUGAACUCUCCAGUG	chr14:24035133-24035392(-)$1	259	57	75	13.8178
AAUCGCAACUACAGCACC	chr1:53370606-53370864(-)$1	258	161	179	11.8814
CCUCCUGUCAGUGAGGAG	chr14:23538691-23538929(-)$1	238	92	110	13.0214
UGUUUCCUUUUUAGAAAC	chr2:70457789-70458095(-)$1	306	269	287	12.1047
CCUCGCAGAUGCCGCUGA	chr8:618602-618873(-)$1	271	109	127	11.4031
UGUCAUUUUACCUGUGUA	chr17:79969351-79969576(+)$1	225	115	133	12.9719
GACGCAUUCACACAGCUU	chr12:69218291-69218542(+)$1	251	160	178	8.8292
CGUCUCUAGUUCUGAGCA	chr11:70644448-70644751(-)$1	303	81	99	13.4926
GGAUCAGUCAGUGUGAUC	chr2:61697693-61697962(-)$1	269	83	101	12.1711
CAACAGACUGAAACUGUU	chr12:104332088-104332337(+)$1	249	23	41	13.1064
GGCUACAGCUACGGAAGC	chr20:42086987-42087244(+)$1	257	140	158	12.7996
AACCCUCGUCACCAGGUA	chr12:57499150-57499421(-)$1	271	156	174	13.3276
GGGCAGGAAGAGACUGGC	chr16:75270541-75270835(-)$1	294	157	175	13.1851
GCAGGCCUCCCAAGCCCA	chr17:45755339-45755557(+)$1	218	188	206	10.6288
GAAAGAGGAUGAAUCUUC	chr19:15763262-15763536(+)$1	274	8	26	12.0746
GGCGGUCCCUCUCACCGC	chr14:103568401-103568671(+)$1	270	14	32	11.4283
GGGGCUGCUGGAUGGUCC	chr11:64681220-64681494(-)$1	274	249	267	13.1623
GAUGAGUCCCUGUUUCCC	chr20:4843382-4843647(-)$1	265	55	73	13.3573
AGACAAAAUCCAAUUGCA	chr6:158487527-158487774(+)$1	247	162	180	13.4556
AGAUGCACUGCUUCAGCA	chr3:49051298-49051599(+)$1	301	97	115	9.2141
GAGGGUCCGUAGCACCCA	chr16:15127067-15127357(+)$1	290	185	203	12.1395
UGGUUUCCACAUUGCUAC	chr6:31698535-31698810(-)$1	275	244	262	9.2175
UCCAGGACUUCGACCUGG	chr12:7260740-7261023(-)$1	283	124	142	13.1064
CUCUGCUCUCUCUUUGUA	chr4:1805370-1805601(+)$1	231	29	47	10.2198
AAGAGCUGUCUGUAUGUU	chr17:79969318-79969551(+)$1	233	65	83	10.2734
AAAGGUAUGGCAAAUCAA	chr12:104341060-104341309(+)$1	249	144	162	11.1377
GCACUGAAUAUGUGUGCU	chr11:129991525-129991804(+)$1	279	56	74	9.8578
UGCAAUUAUUACUUUUGC	chr6:144837848-144838123(+)$1	275	195	213	10.0340
GAGCUUUGCUGAUGAGCC	chr20:17930883-17931147(-)$1	264	237	255	12.3104
GAAUGUGAAGCAGGCAUU	chr6:132199584-132199855(+)$1	271	176	194	13.1064
CGUCCGGAGGACGCGGAC	chr17:79954214-79954484(+)$1	270	214	232	12.9995
ACAGCUGCAAGGAGGCCG	chr3:66023530-66023816(-)$1	286	104	122	13.7219
AGAGCUGGUGGUGAGCUC	chr5:176516793-176517026(+)$1	233	138	156	12.0156
CCAGCACCUGGGAAUUGU	chr2:27448985-27449246(+)$1	261	138	156	10.2734
GUCGGGAGAAGGCCCCGU	chr2:233740584-233740872(+)$1	288	120	138	12.4643
CACCUGGCUUGAUGGUGA	chr9:117062804-117063053(+)$1	249	149	167	9.2810
UCCUUCAGACCCAGAGGG	chr14:74759762-74760043(-)$1	281	139	157	13.1064
CGGGGUGAGUUCGCGGCC	chr1:20811675-20811970(-)$1	295	260	278	10.2198
GGUGGUGAAAGCAGCCGU	chr1:12677133-12677386(-)$1	253	89	107	13.1623

#DB
((((.........)))))	chr17:45755311-45755539(+)$1	1	186	204	9.8578
((.(((.......)))))	chr12:104341309-104341527(+)$1	1	42	60	13.5638
.(.(((.......))).)	chr14:24035133-24035392(-)$1	1	57	75	13.8178
....((.......)))))	chr1:53370606-53370864(-)$1	1	161	179	11.8814
.(((((.......)))))	chr14:23538691-23538929(-)$1	1	92	110	13.0214
((((((.......)))))	chr2:70457789-70458095(-)$1	1	269	287	12.1047
((((((.......)).))	chr8:618602-618873(-)$1	1	109	127	11.4031
.(((((.......))).)	chr17:79969351-79969576(+)$1	1	115	133	12.9719
((.((.........)).)	chr12:69218291-69218542(+)$1	1	160	178	8.8292
.(.(((.......)))).	chr11:70644448-70644751(-)$1	1	81	99	13.4926
(.((((.......)))))	chr2:61697693-61697962(-)$1	1	83	101	12.1711
((((((.......)))))	chr12:104332088-104332337(+)$1	1	23	41	13.1064
((((.(.......).)))	chr20:42086987-42087244(+)$1	1	140	158	12.7996
((.(((.......)))..	chr12:57499150-57499421(-)$1	1	156	174	13.3276
((.(((.......))).)	chr16:75270541-75270835(-)$1	1	157	175	13.1851
.))(((.......)))..	chr17:45755339-45755557(+)$1	1	188	206	10.6288
(((.((.......)))))	chr19:15763262-15763536(+)$1	1	8	26	12.0746
((((((.......)))))	chr14:103568401-103568671(+)$1	1	14	32	11.4283
((((((.......)))))	chr11:64681220-64681494(-)$1	1	249	267	13.1623
((((((.......)))..	chr20:4843382-4843647(-)$1	1	55	73	13.3573
((.(((.......)))..	chr6:158487527-158487774(+)$1	1	162	180	13.4556
.(((((.........)))	chr3:49051298-49051599(+)$1	1	97	115	9.2141
((((((.......)))).	chr16:15127067-15127357(+)$1	1	185	203	12.1395
((((.........)))))	chr6:31698535-31698810(-)$1	1	244	262	9.2175
((((((.......)))))	chr12:7260740-7261023(-)$1	1	124	142	13.1064
.(((((.........)))	chr4:1805370-1805601(+)$1	1	29	47	10.2198
((((((.........)))	chr17:79969318-79969551(+)$1	1	65	83	10.2734
...(((.......)))..	chr12:104341060-104341309(+)$1	1	144	162	11.1377
((((.........)))))	chr11:129991525-129991804(+)$1	1	56	74	9.8578
(((((.........))))	chr6:144837848-144838123(+)$1	1	195	213	10.0340
(.((((.......)))))	chr20:17930883-17931147(-)$1	1	237	255	12.3104
((((((.......)))))	chr6:132199584-132199855(+)$1	1	176	194	13.1064
.(((((.......)))))	chr17:79954214-79954484(+)$1	1	214	232	12.9995
((.(((.......))).)	chr3:66023530-66023816(-)$1	1	104	122	13.7219
.(((((.......)))))	chr5:176516793-176517026(+)$1	1	138	156	12.0156
((((((.........)))	chr2:27448985-27449246(+)$1	1	138	156	10.2734
(.((((.......)))))	chr2:233740584-233740872(+)$1	1	120	138	12.4643
((((.........)))).	chr9:117062804-117063053(+)$1	1	149	167	9.2810
((((((.......)))))	chr14:74759762-74760043(-)$1	1	139	157	13.1064
.(((((.........)))	chr1:20811675-20811970(-)$1	1	260	278	10.2198
((((((.......)))))	chr1:12677133-12677386(-)$1	1	89	107	13.1623

#PSSM
g : 0.14	c : 0.12	[ : 0.12	e : 0.09	f : 0.09	b : 0.09	d : 0.07	! : 0.04	i : 0.04	: : 0.04	# : 0.02	2 : 0.02	h : 0.02	$ : 0.02	
e : 0.24	b : 0.14	g : 0.14	c : 0.09	f : 0.07	[ : 0.07	a : 0.04	d : 0.04	i : 0.04	# : 0.02	h : 0.02	$ : 0.02	
e : 0.24	[ : 0.19	d : 0.14	g : 0.14	f : 0.07	b : 0.04	i : 0.04	# : 0.02	c : 0.02	h : 0.02	$ : 0.02	
c : 0.26	e : 0.24	d : 0.14	g : 0.14	f : 0.04	i : 0.04	# : 0.02	b : 0.02	[ : 0.02	h : 0.02	
c : 0.26	e : 0.17	g : 0.14	r : 0.09	b : 0.09	d : 0.09	i : 0.04	f : 0.02	[ : 0.02	h : 0.02	
c : 0.26	r : 0.14	e : 0.14	g : 0.14	d : 0.09	b : 0.07	i : 0.04	f : 0.02	a : 0.02	h : 0.02	
p : 0.73	r : 0.26	
p : 0.73	r : 0.26	
p : 0.73	r : 0.26	
p : 0.73	r : 0.26	
p : 0.73	r : 0.26	
p : 0.73	r : 0.26	
p : 0.73	r : 0.26	
c : 0.26	r : 0.17	e : 0.12	d : 0.12	g : 0.09	b : 0.07	f : 0.04	i : 0.04	a : 0.02	h : 0.02	
c : 0.26	e : 0.14	d : 0.12	r : 0.12	b : 0.09	g : 0.09	f : 0.04	i : 0.04	] : 0.02	h : 0.02	
c : 0.31	e : 0.24	g : 0.14	d : 0.12	f : 0.04	i : 0.04	] : 0.02	b : 0.02	h : 0.02	
e : 0.24	d : 0.14	g : 0.14	] : 0.12	c : 0.07	f : 0.04	i : 0.04	3 : 0.04	a : 0.02	2 : 0.02	: : 0.02	h : 0.02	5 : 0.02	
e : 0.24	g : 0.14	c : 0.12	f : 0.07	b : 0.07	d : 0.04	2 : 0.04	i : 0.04	3 : 0.04	] : 0.04	a : 0.02	: : 0.02	h : 0.02	5 : 0.02	

#score	487.5036159013172
#seq	41
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_transcript_m3_run1.txt

#BEAR
!ccc!!eeeee[bb####ccc[a[a[a[ffffff!!ccc"	chr19:34882580-34882817(+)$1	237	94	134	15.7480
'''ccc[iiiiiiiii!!ccc[bb!!ffffff[ffffff!	chr19:34876819-34877026(+)$1	207	49	89	12.8516
fff"""dddd[bb####dddd!!dddd[ffffff!!ccc[	chr19:34882886-34883092(+)$1	206	36	76	14.4800
dd!!ccc####ffffff[dddd####bb####bb[dddd[	chr18:47340372-47340632(+)$1	260	54	94	11.7110
ffffgggggggccc####dddd!!dddd[ffffff!!ccc	chr19:34882850-34883058(+)$1	208	71	111	14.6330
eee[dddd[eeeee"""a!!ccc[ffffff[ccc[a[bb[	chr15:91446141-91446421(+)$1	280	95	135	12.9036
cccdddd[ffffff!!ccc[eeeee!!ffffff"""ccc[	chr19:34882918-34883129(+)$1	211	24	64	13.2746
f"""bb[eeeee!!a"""dddd!!hhhhhhhh[bb!!ccc	chr4:850285-850593(-)$1	308	32	72	11.9289
ee[dddd[bb!!bb[bb[dddd!!iiiiiiiiiooooooi	chr17:17120121-17120362(-)$1	241	116	156	10.6992
"""ggggggg[gggggggeeeee[ffffff[ccc"""ggg	chr16:88995858-88996137(-)$1	279	21	61	13.1489
fffff[eeeee"""ggggggg[a[ggggggg[bb[a[bb[	chr16:88995823-88996058(-)$1	235	3	43	11.1067
d!!dddd[ffffff!!ccc[eeeee!!ffffff"""ccc[	chr19:34882827-34883036(+)$1	209	115	155	13.7013
ee[==========eeeeedddd[ffffff[dddda[dddd	chr19:49607543-49607795(+)$1	252	19	59	11.6443
=======bb[ggggggg!!ccc####ffffffffffffpp	chr17:17120176-17120422(-)$1	246	63	103	12.0606
dddeeeee[cccccc!!ffffff"""eeeee!!eeeee[e	chr1:53748950-53749208(-)$1	258	91	131	10.6840
h]aeeeee[a[dddd!!dddd[ggggggg[dddd!!dddd	chr16:841680-841945(+)$1	265	111	151	10.8856
d[ffffff[ffffff"""dddd[a[a[ffffff!!bb%%%	chr16:88996135-88996349(-)$1	214	3	43	11.9733
dddd[bb####a[===========!!bbeeeee!!cccqq	chr19:34883718-34883930(+)$1	212	39	79	10.2745
[bb[eeeee[dddd####dddd####bb[bb[dddd[ddd	chr1:227148083-227148344(+)$1	261	67	107	11.8244
'''ccc[iiiiiiiii!!ccc[bb!!ffffff[ffffff!	chr19:34876826-34877037(+)$1	211	42	82	12.8516
dd[ccc[a[ffffff[bb[dddd"""ccc[ccc!!ccc[c	chr16:600544-600850(+)$1	306	122	162	13.2058
ccc[===========[a[a[ffffff[ffffff[hhhhhh	chr20:45885941-45886219(-)$1	278	2	42	12.6229
dd[ggggggg[ccc####dddd####ffffff[a!!ccc"	chr11:65193769-65194006(+)$1	237	52	92	18.4279
fff"""dddd[bb####dddd!!dddd[ffffff!!ccc[	chr19:34882892-34883102(+)$1	210	30	70	14.4800
cc[==========$$$$$dddd!!ggggggg%%%%%%hhh	chr15:66639441-66639650(-)$1	209	97	137	11.8828
fff"""dddd[bb####dddd!!dddd[ffffff!!ccc[	chr19:34882872-34883086(+)$1	214	50	90	14.4800
ccccccccc!!ccc[eeeee[bbggggggg[dddd[ccc!	chr19:34882029-34882267(+)$1	238	103	143	10.6380
e!!==========$$$$$bb[bb[cccbbcccoooooocc	chr9:19379314-19379566(-)$1	252	15	55	11.0790
dddd[dddd!!eeeee!!dddd!!iiiiiiiii$$$$$ee	chr1:173834665-173834900(-)$1	235	32	72	11.9960
hh[============"""ddddbb$$$$$bb$$$$$ccc$	chr19:34883556-34883813(+)$1	257	10	50	13.3010
ee!!eeeee[ggggggg[eeeee"""ffffff[ggggggg	chr20:45886125-45886412(-)$1	287	20	60	13.8317
d!!iiiiiiiii[a[bb[ccca[===========!!eeee	chr6:26027329-26027553(-)$1	224	26	66	14.2103
ddddgggggggccc####ccc[bbccc[ffffffoooooo	chr22:38887909-38888152(-)$1	243	101	141	12.6736
fffff=========="""dddd[eeeee!!eeeee[a[ee	chr19:2271033-2271279(+)$1	246	79	119	13.0831
fff"""dddd[bb####dddd!!dddd[ffffff!!ccc[	chr19:34882858-34883072(+)$1	214	64	104	14.4800
ff"""hhhhhhhh$$$$$dddd[ffffff[bb[ccc!!ff	chr17:25635435-25635708(+)$1	273	36	76	12.0534
ggggeeeee[ffffff[ffffff"""ffffff[a[eeeee	chr16:88996149-88996388(-)$1	239	34	74	12.4005
"""ccc!!bb[ffffff[dddd"""ffffff####ddddb	chrX:13347615-13347831(+)$1	216	91	131	13.0523
gggggg!!ggggggg[bb!!bb[bb[ffffff[a[eeeee	chr14:31344593-31344868(+)$1	275	17	57	12.7990
bb[dddd[dddd[bb[bb[bb[a"""ffffff"""a[bb[	chr1:227147849-227148089(+)$1	240	8	48	12.1665
cc[cccbb!!ccc[a[bb[dddd[ffffff!!ccc[ccc"	chr16:600840-601081(+)$1	241	32	72	12.8268
'''ccc[iiiiiiiii!!ccc[bb!!ffffff[ffffff!	chr19:34876810-34877019(+)$1	209	58	98	12.8516
dd!!==========$$$$$bb!!dddd[eeeee[cccooo	chr19:34883945-34884159(+)$1	214	127	167	12.2829
bb[hhhhhhhh!!ccc!!eeeee[a!!bb[bb"""ccc[a	chr21:11085335-11085625(-)$1	290	85	125	11.3047
iiii"""abb[ccca####dddd[bb[dddd"""eeeee[	chr19:34873969-34874203(+)$1	234	112	152	12.1227
c[ggggggg!!ccc$$$$$ccc!!a"""ffffff[ggggg	chr18:43669718-43670001(-)$1	283	41	81	15.1349
eeee####eeeee[a[ccc[a[a[============[iii	chr10:11921143-11921422(-)$1	279	66	106	12.0538
dd[ggggggg[ccc####dddd####ffffff[a!!ccc"	chr11:65193752-65193969(+)$1	217	69	109	18.4279
c!!iiiiiiiii[a[bb[ccca[===========!!eeee	chr6:26027307-26027529(-)$1	222	2	42	14.2271
========ffffff$$$$$a[ccc!!dddd[a[aeeeee"	chr19:34877893-34878203(+)$1	310	46	86	12.1082
dddggggggg[eeeeeeeeee[bb!!a[eeeee!!bb[dd	chr19:34876226-34876441(+)$1	215	82	122	10.3683
ggggeeeee[ffffff[ffffff"""ffffff[a[ccc[f	chr16:88996266-88996507(-)$1	241	9	49	12.8388
cbb[eeeee!!ccc$$$$$ddddffffff[ccc!!bblll	chr19:34885261-34885510(+)$1	249	143	183	11.4977

#otherMatches

#Seq PSSM
UCUGGAUCUUCUAGUGUCUGAGGAGGUGGGAUCUGGUAUU	chr19:34882580-34882817(+)$1	237	94	134	15.7480
AACUACAGGUAGGUAGAGCUGGCCCACUGGGUGUGGUUUG	chr19:34876819-34877026(+)$1	207	49	89	12.8516
UCUGGGUCUUUCAAUGUCUGAGAAGGUAGGAUCUGGUACA	chr19:34882886-34883092(+)$1	206	36	76	14.4800
UUUUGGGUACUGUACUGGGGGCAGGGCAGAGAGGUGGGCG	chr18:47340372-47340632(+)$1	260	54	94	11.7110
AUCUGGGUCUUUCAAUGUCUGAGAAGGUAGGAUCUGGUAC	chr19:34882850-34883058(+)$1	208	71	111	14.6330
CCGGCUGCCCCGACAGAGGCCGGGCUCGGGCGGCGGGAGU	chr15:91446141-91446421(+)$1	280	95	135	12.9036
AGAAGGUAGGAUCUGGUACAGGUGUGAGGAUCUGGGUCUG	chr19:34882918-34883129(+)$1	211	24	64	13.2746
ugagaccccuguaagaauuagccagcugugguggugagca	chr4:850285-850593(-)$1	308	32	72	11.9289
GUGGGCACGGAGACCCGGGUCUGGUCUGAUGAUGUUUAAA	chr17:17120121-17120362(-)$1	241	116	156	10.6992
UUUUGCGUGGACCACGCAGCUGUGGGUAUUGGUAGUUUUU	chr16:88995858-88996137(-)$1	279	21	61	13.1489
GUAUUGGUAGUUUUUGCGUGGAUGAUGCAGAUGUGGGUAU	chr16:88995823-88996058(-)$1	235	3	43	11.1067
AGAAGGUAGGAUCUGGUACAGGUGUGAGGAUCUGGGUCUG	chr19:34882827-34883036(+)$1	209	115	155	13.7013
CGAUUUUGGCCGCCCUGGCGGGAGGGGGCUGUUCCAUCAU	chr19:49607543-49607795(+)$1	252	19	59	11.6443
GUGCGGCGCAGGGCAGUAUUGGCCUGGUGCCUGGCGUCAG	chr17:17120176-17120422(-)$1	246	63	103	12.0606
GCCCGGGUAUGUAGUAAGUAAGUGGCCCGGGUAUGCCACU	chr1:53748950-53749208(-)$1	258	91	131	10.6840
AGGCCGGGAGCGUCCUGUAGGUGCGGUGCACACUACGCCU	chr16:841680-841945(+)$1	265	111	151	10.8856
UGGGUAUUGGUAGCUUUUGCGUGGACGAUGCAGCUGUGGG	chr16:88996135-88996349(-)$1	214	3	43	11.9733
GCACAGGUAUGAGGCCUGGGGUCUGUCCGUGUCUGAGGAG	chr19:34883718-34883930(+)$1	212	39	79	10.2745
gugguggcaguacuugguggugguggcagugguacuuggu	chr1:227148083-227148344(+)$1	261	67	107	11.8244
AACUACAGGUAGGUAGAGCUGGCCCACUGGGUGUGGUUUG	chr19:34876826-34877037(+)$1	211	42	82	12.8516
GGUCGGUGAGGGCCCCCAGUCGGUGAGGGUCCCGGUCGGU	chr16:600544-600850(+)$1	306	122	162	13.2058
gcguguguguauaugGUGAGCAUAUAGUAUAUGGGUAUAU	chr20:45885941-45886219(-)$1	278	2	42	12.6229
UAUGGGGAAGUAGUCUCGGGUAUGCUGUUGUGAAAUUGAA	chr11:65193769-65194006(+)$1	237	52	92	18.4279
UCUGGGUCUUUCAAUGUCUGAGAAGGUAGGAUCUGGUACA	chr19:34882892-34883102(+)$1	210	30	70	14.4800
CCAUACAUGUUUGUUUUUGUUUUUUAACUUUUAACAGAUG	chr15:66639441-66639650(-)$1	209	97	137	11.8828
UCUGGGUCUUUCAAUGUCUGAGAAGGUAGGAUCUGGUACA	chr19:34882872-34883086(+)$1	214	50	90	14.4800
UCAGUAUCUGAGGAGGUGGGAUCGGGUCCUGGUAUGAGGA	chr19:34882029-34882267(+)$1	238	103	143	10.6380
UCGUACUUUCUAUGAGAAGCGUAUGGCCACAGAAGUUGCU	chr9:19379314-19379566(-)$1	252	15	55	11.0790
ACAGUGUUUAUGUGUUUUCCUUGAGCAUGUUUGGAACGGG	chr1:173834665-173834900(-)$1	235	32	72	11.9960
UGAGCAUCUGGGUCUGACCAUGUCUAAAGAGUUGAAGCUG	chr19:34883556-34883813(+)$1	257	10	50	13.3010
uauguauguguguauaugguaugacaguauaugguauaug	chr20:45886125-45886412(-)$1	287	20	60	13.8317
CUUGCUUUCUUUUCGCGUACCUGGUUUUUGUUGUCAGCUG	chr6:26027329-26027553(-)$1	224	26	66	14.2103
GAUAGGUGUCUCUGUCAAUGGUAUAUGUAUCUUUUGGUUU	chr22:38887909-38888152(-)$1	243	101	141	12.6736
GGGCCCCCCGCCCUGGGAAGGUUGGGCUGUCCUGGGCGGC	chr19:2271033-2271279(+)$1	246	79	119	13.0831
UCUGGGUCUUUCAAUGUCUGAGAAGGUAGGAUCUGGUACA	chr19:34882858-34883072(+)$1	214	64	104	14.4800
AGAUGGUUAAAUUUUGAUUUAUUGAAAUGUAAUUGUAUUA	chr17:25635435-25635708(+)$1	273	36	76	12.0534
UGCAGCUGUGGGUAUUGGUAGCUUUUGCGUGGACGAUGCA	chr16:88996149-88996388(-)$1	239	34	74	12.4005
GAGGGAGAUGUGGGUGUCCAGGUAAAUUAUCCUACUCUAC	chrX:13347615-13347831(+)$1	216	91	131	13.0523
GGCAGCAGGAGGUCGAGGAAGGAGGACUCCUUGAGCCUCA	chr14:31344593-31344868(+)$1	275	17	57	12.7990
ugguacuuggugguggugguggugaugguacuuguggugg	chr1:227147849-227148089(+)$1	240	8	48	12.1665
GGUCCCCUGUCGGUGAGGUCCCUGGUCGGUGAGGGUCCCG	chr16:600840-601081(+)$1	241	32	72	12.8268
AACUACAGGUAGGUAGAGCUGGCCCACUGGGUGUGGUUUG	chr19:34876810-34877019(+)$1	209	58	98	12.8516
ACCAGGGACAGGGUUUCCGGCAGGAGGUGGGGGGCGGGGU	chr19:34883945-34884159(+)$1	214	127	167	12.2829
ucgugguuuuagugguggugguggugguggugguggucgu	chr21:11085335-11085625(-)$1	290	85	125	11.3047
UCUCAGGGCUCGGCCAGGGUCAGCGCACGCCACAGGGCCA	chr19:34873969-34874203(+)$1	234	112	152	12.1227
UAUGUCCUUGAACUUGGAACCUGACAAUGUUGGUGUUGUC	chr18:43669718-43670001(-)$1	283	41	81	15.1349
ucccuccuggggcuggugaguugucucuggcuggggcugg	chr10:11921143-11921422(-)$1	279	66	106	12.0538
UAUGGGGAAGUAGUCUCGGGUAUGCUGUUGUGAAAUUGAA	chr11:65193752-65193969(+)$1	217	69	109	18.4279
CUUGCUUUCUUUUCGCGUACCUGGUUUUUGUUGUCAGCUG	chr6:26027307-26027529(-)$1	222	2	42	14.2271
GCCAGGCUCACAUAAAUAAAGCUGGACCCUGGGAGGCUGU	chr19:34877893-34878203(+)$1	310	46	86	12.1082
UCUCCUGGGUGAGGUUGAGGAGCUGUGGCCAGGUACAGGU	chr19:34876226-34876441(+)$1	215	82	122	10.3683
UGCAGCUGUGGGUAUUGGUAGCUUUUGCGUGGACGAUGCA	chr16:88996266-88996507(-)$1	241	9	49	12.8388
AGGUGGGAUUUGGCCAUAGGGUGGGGCUGCAAGCUGGAAU	chr19:34885261-34885510(+)$1	249	143	183	11.4977

#DB
.(((..(((((.((....(((.(.(.(.((((((..(((.	chr19:34882580-34882817(+)$1	1	94	134	15.7480
...(((.(((((((((..(((.((..((((((.((((((.	chr19:34876819-34877026(+)$1	1	49	89	12.8516
(((...((((.((....((((..((((.((((((..(((.	chr19:34882886-34883092(+)$1	1	36	76	14.4800
((..(((....((((((.((((....((....((.((((.	chr18:47340372-47340632(+)$1	1	54	94	11.7110
))))((((((((((....((((..((((.((((((..(((	chr19:34882850-34883058(+)$1	1	71	111	14.6330
(((.((((.(((((...(..(((.((((((.(((.(.((.	chr15:91446141-91446421(+)$1	1	95	135	12.9036
)))((((.((((((..(((.(((((..((((((...(((.	chr19:34882918-34883129(+)$1	1	24	64	13.2746
(...((.(((((..(...((((..((((((((.((..(((	chr4:850285-850593(-)$1	1	32	72	11.9289
((.((((.((..((.((.((((..(((((((((......)	chr17:17120121-17120362(-)$1	1	116	156	10.6992
...(((((((.((((((((((((.((((((.(((...(((	chr16:88995858-88996137(-)$1	1	21	61	13.1489
(((((.(((((...(((((((.(.(((((((.((.(.((.	chr16:88995823-88996058(-)$1	1	3	43	11.1067
(..((((.((((((..(((.(((((..((((((...(((.	chr19:34882827-34883036(+)$1	1	115	155	13.7013
((.(((((((((((((((((((.((((((.(((((.((((	chr19:49607543-49607795(+)$1	1	19	59	11.6443
(((((((((.(((((((..(((....((((((((((((..	chr17:17120176-17120422(-)$1	1	63	103	12.0606
((((((((.((((((..((((((...(((((..(((((.(	chr1:53748950-53749208(-)$1	1	91	131	10.6840
).)(((((.(.((((..((((.(((((((.((((..((((	chr16:841680-841945(+)$1	1	111	151	10.8856
(.((((((.((((((...((((.(.(.((((((..((...	chr16:88996135-88996349(-)$1	1	3	43	11.9733
((((.((....(.(((((((((((..(((((((..(((..	chr19:34883718-34883930(+)$1	1	39	79	10.2745
.((.(((((.((((....((((....((.((.((((.(((	chr1:227148083-227148344(+)$1	1	67	107	11.8244
...(((.(((((((((..(((.((..((((((.((((((.	chr19:34876826-34877037(+)$1	1	42	82	12.8516
((.(((.(.((((((.((.((((...(((.(((..(((.(	chr16:600544-600850(+)$1	1	122	162	13.2058
(((.(((((((((((.(.(.((((((.((((((.((((((	chr20:45885941-45886219(-)$1	1	2	42	12.6229
((.(((((((.(((....((((....((((((.(..(((.	chr11:65193769-65194006(+)$1	1	52	92	18.4279
(((...((((.((....((((..((((.((((((..(((.	chr19:34882892-34883102(+)$1	1	30	70	14.4800
((.((((((((((.....((((..(((((((......(((	chr15:66639441-66639650(-)$1	1	97	137	11.8828
(((...((((.((....((((..((((.((((((..(((.	chr19:34882872-34883086(+)$1	1	50	90	14.4800
)))((((((..(((.(((((.(((((((((.((((.(((.	chr19:34882029-34882267(+)$1	1	103	143	10.6380
(..((((((((((.....((.((.((((((((......))	chr9:19379314-19379566(-)$1	1	15	55	11.0790
((((.((((..(((((..((((..(((((((((.....((	chr1:173834665-173834900(-)$1	1	32	72	11.9960
((.((((((((((((...((((((.....((.....(((.	chr19:34883556-34883813(+)$1	1	10	50	13.3010
((..(((((.(((((((.(((((...((((((.(((((((	chr20:45886125-45886412(-)$1	1	20	60	13.8317
(..(((((((((.(.((.((((.(((((((((((..((((	chr6:26027329-26027553(-)$1	1	26	66	14.2103
)))))))))))(((....(((.(((((.((((((......	chr22:38887909-38888152(-)$1	1	101	141	12.6736
)))))((((((((((...((((.(((((..(((((.(.((	chr19:2271033-2271279(+)$1	1	79	119	13.0831
(((...((((.((....((((..((((.((((((..(((.	chr19:34882858-34883072(+)$1	1	64	104	14.4800
((...((((((((.....((((.((((((.((.(((..((	chr17:25635435-25635708(+)$1	1	36	76	12.0534
(((((((((.((((((.((((((...((((((.(.(((((	chr16:88996149-88996388(-)$1	1	34	74	12.4005
...(((..((.((((((.((((...((((((....(((((	chrX:13347615-13347831(+)$1	1	91	131	13.0523
((((((..(((((((.((..((.((.((((((.(.(((((	chr14:31344593-31344868(+)$1	1	17	57	12.7990
((.((((.((((.((.((.((.(...((((((...(.((.	chr1:227147849-227148089(+)$1	1	8	48	12.1665
((.(((((..(((.(.((.((((.((((((..(((.(((.	chr16:600840-601081(+)$1	1	32	72	12.8268
...(((.(((((((((..(((.((..((((((.((((((.	chr19:34876810-34877019(+)$1	1	58	98	12.8516
((..((((((((((.....((..((((.(((((.(((...	chr19:34883945-34884159(+)$1	1	127	167	12.2829
((.((((((((..(((..(((((.(..((.((...(((.(	chr21:11085335-11085625(-)$1	1	85	125	11.3047
((((...(((.((((....((((.((.((((...(((((.	chr19:34873969-34874203(+)$1	1	112	152	12.1227
(.(((((((..(((.....(((..(...((((((.(((((	chr18:43669718-43670001(-)$1	1	41	81	15.1349
((((....(((((.(.(((.(.(.((((((((((((.(((	chr10:11921143-11921422(-)$1	1	66	106	12.0538
((.(((((((.(((....((((....((((((.(..(((.	chr11:65193752-65193969(+)$1	1	69	109	18.4279
(..(((((((((.(.((.((((.(((((((((((..((((	chr6:26027307-26027529(-)$1	1	2	42	14.2271
((((((((((((((.....(.(((..((((.(.((((((.	chr19:34877893-34878203(+)$1	1	46	86	12.1082
)))(((((((.((((((((((.((..(.(((((..((.((	chr19:34876226-34876441(+)$1	1	82	122	10.3683
(((((((((.((((((.((((((...((((((.(.(((.(	chr16:88996266-88996507(-)$1	1	9	49	12.8388
)((.(((((..(((.....((((((((((.(((..((...	chr19:34885261-34885510(+)$1	1	143	183	11.4977

#PSSM
d : 0.24	f : 0.16	c : 0.15	e : 0.11	' : 0.05	g : 0.05	" : 0.03	= : 0.03	h : 0.03	b : 0.03	! : 0.01	[ : 0.01	i : 0.01	
d : 0.18	f : 0.15	c : 0.11	e : 0.09	! : 0.07	b : 0.07	' : 0.05	" : 0.05	g : 0.05	= : 0.03	[ : 0.03	] : 0.01	h : 0.01	i : 0.01	
[ : 0.18	f : 0.15	! : 0.13	d : 0.09	c : 0.07	" : 0.07	g : 0.07	' : 0.05	e : 0.03	= : 0.03	b : 0.03	a : 0.01	i : 0.01	
c : 0.15	g : 0.15	d : 0.13	" : 0.11	= : 0.11	f : 0.07	[ : 0.07	! : 0.05	e : 0.05	i : 0.05	h : 0.01	
c : 0.15	g : 0.15	= : 0.15	e : 0.13	" : 0.11	d : 0.09	f : 0.05	[ : 0.03	i : 0.03	! : 0.01	b : 0.01	h : 0.01	# : 0.01	
= : 0.16	c : 0.15	g : 0.15	e : 0.13	d : 0.11	" : 0.09	b : 0.03	i : 0.03	h : 0.03	! : 0.01	[ : 0.01	f : 0.01	# : 0.01	
d : 0.18	e : 0.16	= : 0.16	g : 0.13	[ : 0.09	c : 0.03	b : 0.03	i : 0.03	h : 0.03	! : 0.03	f : 0.01	" : 0.01	# : 0.01	
e : 0.18	= : 0.15	g : 0.13	d : 0.11	i : 0.09	[ : 0.07	# : 0.05	b : 0.03	a : 0.03	h : 0.03	! : 0.03	f : 0.01	c : 0.01	
e : 0.16	g : 0.15	= : 0.13	d : 0.11	i : 0.09	[ : 0.09	b : 0.07	f : 0.05	# : 0.03	h : 0.03	c : 0.01	! : 0.01	
g : 0.13	= : 0.13	e : 0.09	i : 0.09	d : 0.09	f : 0.09	[ : 0.09	! : 0.09	b : 0.05	# : 0.03	h : 0.03	c : 0.01	a : 0.01	
[ : 0.20	f : 0.13	= : 0.13	e : 0.09	i : 0.09	g : 0.09	! : 0.09	# : 0.03	c : 0.03	d : 0.03	h : 0.03	
c : 0.18	f : 0.16	= : 0.13	i : 0.09	e : 0.09	b : 0.07	g : 0.07	d : 0.05	! : 0.03	[ : 0.01	" : 0.01	a : 0.01	h : 0.01	
c : 0.18	f : 0.16	= : 0.13	b : 0.11	e : 0.07	g : 0.07	[ : 0.07	i : 0.05	! : 0.03	d : 0.03	" : 0.01	h : 0.01	
c : 0.18	f : 0.16	= : 0.09	# : 0.07	e : 0.07	g : 0.07	b : 0.05	i : 0.05	$ : 0.05	d : 0.03	a : 0.03	[ : 0.03	! : 0.01	" : 0.01	
# : 0.18	$ : 0.13	f : 0.11	g : 0.09	a : 0.07	[ : 0.07	= : 0.07	i : 0.05	e : 0.05	! : 0.03	c : 0.03	" : 0.01	d : 0.01	b : 0.01	
# : 0.20	$ : 0.13	[ : 0.11	" : 0.09	f : 0.07	! : 0.07	g : 0.07	e : 0.07	i : 0.05	b : 0.05	= : 0.01	c : 0.01	
# : 0.20	! : 0.13	b : 0.13	$ : 0.13	" : 0.09	g : 0.07	c : 0.05	e : 0.05	f : 0.03	[ : 0.03	= : 0.01	a : 0.01	
# : 0.13	[ : 0.13	$ : 0.13	! : 0.11	d : 0.09	" : 0.07	b : 0.07	c : 0.05	e : 0.05	f : 0.05	g : 0.03	a : 0.01	= : 0.01	
d : 0.37	c : 0.18	e : 0.09	$ : 0.07	! : 0.05	f : 0.05	[ : 0.05	g : 0.01	= : 0.01	a : 0.01	b : 0.01	# : 0.01	
d : 0.45	c : 0.16	e : 0.09	[ : 0.07	f : 0.05	b : 0.05	! : 0.03	g : 0.01	= : 0.01	a : 0.01	
d : 0.45	c : 0.18	e : 0.11	f : 0.07	[ : 0.05	b : 0.05	g : 0.01	= : 0.01	a : 0.01	
d : 0.35	[ : 0.18	! : 0.09	e : 0.09	c : 0.07	f : 0.07	b : 0.05	a : 0.03	= : 0.01	
! : 0.20	b : 0.15	[ : 0.13	# : 0.09	e : 0.09	a : 0.07	f : 0.07	d : 0.07	c : 0.03	g : 0.01	= : 0.01	" : 0.01	
[ : 0.16	b : 0.13	" : 0.13	! : 0.11	d : 0.09	# : 0.09	f : 0.07	e : 0.05	= : 0.05	g : 0.03	a : 0.01	c : 0.01	
f : 0.13	" : 0.13	! : 0.11	d : 0.11	# : 0.09	g : 0.07	a : 0.05	e : 0.05	= : 0.05	i : 0.03	c : 0.03	b : 0.03	h : 0.01	[ : 0.01	$ : 0.01	
! : 0.16	f : 0.15	" : 0.13	d : 0.11	# : 0.09	g : 0.07	= : 0.05	[ : 0.03	i : 0.03	c : 0.03	h : 0.01	a : 0.01	$ : 0.01	e : 0.01	b : 0.01	
f : 0.33	d : 0.13	g : 0.07	b : 0.05	! : 0.05	[ : 0.05	c : 0.05	= : 0.05	a : 0.03	i : 0.03	e : 0.03	h : 0.01	$ : 0.01	" : 0.01	
f : 0.41	[ : 0.15	b : 0.09	g : 0.07	d : 0.05	= : 0.05	i : 0.03	e : 0.03	h : 0.01	c : 0.01	$ : 0.01	" : 0.01	
f : 0.54	g : 0.07	e : 0.07	= : 0.05	[ : 0.03	i : 0.03	b : 0.03	d : 0.03	# : 0.01	h : 0.01	c : 0.01	$ : 0.01	! : 0.01	
f : 0.50	[ : 0.11	e : 0.07	g : 0.05	= : 0.05	i : 0.03	b : 0.03	d : 0.03	# : 0.01	h : 0.01	c : 0.01	! : 0.01	
f : 0.45	e : 0.09	[ : 0.07	b : 0.07	d : 0.05	c : 0.05	= : 0.05	i : 0.03	g : 0.03	# : 0.01	h : 0.01	! : 0.01	
f : 0.43	c : 0.09	e : 0.07	d : 0.05	= : 0.05	# : 0.03	i : 0.03	[ : 0.03	! : 0.03	b : 0.03	h : 0.01	% : 0.01	$ : 0.01	" : 0.01	a : 0.01	
f : 0.24	[ : 0.22	c : 0.09	d : 0.07	e : 0.07	= : 0.05	" : 0.05	b : 0.03	i : 0.03	! : 0.01	% : 0.01	o : 0.01	$ : 0.01	# : 0.01	
f : 0.22	a : 0.11	" : 0.09	! : 0.09	c : 0.07	d : 0.07	b : 0.05	= : 0.05	o : 0.03	e : 0.03	[ : 0.03	$ : 0.03	% : 0.01	g : 0.01	# : 0.01	
! : 0.28	[ : 0.13	f : 0.09	" : 0.09	e : 0.07	o : 0.05	c : 0.05	d : 0.03	$ : 0.03	b : 0.01	a : 0.01	h : 0.01	% : 0.01	g : 0.01	# : 0.01	= : 0.01	
! : 0.22	c : 0.11	e : 0.09	f : 0.07	[ : 0.07	d : 0.05	a : 0.05	" : 0.05	o : 0.05	b : 0.05	$ : 0.03	g : 0.03	h : 0.01	% : 0.01	= : 0.01	
c : 0.32	e : 0.13	[ : 0.09	f : 0.07	d : 0.07	! : 0.05	o : 0.05	b : 0.05	g : 0.03	" : 0.01	h : 0.01	% : 0.01	$ : 0.01	a : 0.01	
c : 0.33	e : 0.13	d : 0.09	f : 0.07	o : 0.07	b : 0.05	g : 0.05	h : 0.03	[ : 0.03	% : 0.01	$ : 0.01	! : 0.01	i : 0.01	l : 0.01	
c : 0.28	e : 0.15	d : 0.11	f : 0.07	[ : 0.07	b : 0.05	o : 0.05	g : 0.05	h : 0.03	p : 0.01	% : 0.01	q : 0.01	i : 0.01	l : 0.01	
[ : 0.20	e : 0.13	" : 0.09	! : 0.07	c : 0.07	d : 0.07	g : 0.05	i : 0.03	h : 0.03	o : 0.03	f : 0.03	p : 0.01	% : 0.01	q : 0.01	$ : 0.01	b : 0.01	a : 0.01	l : 0.01	

#score	679.297122452477
#seq	53
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105PMR_SBDS_transcript_m2_run2.txt

#BEAR
cc[eeeeemmmmeeeeeccc	chr7:5340286-5340491(+)$1	205	146	166	17.1601
cc[eeeeemmmmeeeee]cc	chr5:109035342-109035590(-)$1	248	216	236	17.0704
cc[eeeeemmmmeeeeeccc	chr7:5340291-5340511(+)$1	220	141	161	17.1601
bb[eeeeemmmmeeeeebbd	chr14:76070447-76070698(+)$1	251	198	218	16.0935

#otherMatches

#Seq PSSM
GUGUGGGGACAUUCUCAGCC	chr7:5340286-5340491(+)$1	205	146	166	17.1601
auggaggacgggucuucggu	chr5:109035342-109035590(-)$1	248	216	236	17.0704
GUGUGGGGACAUUCUCAGCC	chr7:5340291-5340511(+)$1	220	141	161	17.1601
cauaacuuucauagguuugg	chr14:76070447-76070698(+)$1	251	198	218	16.0935

#DB
((.(((((....))))))))	chr7:5340286-5340491(+)$1	1	146	166	17.1601
((.(((((....))))).))	chr5:109035342-109035590(-)$1	1	216	236	17.0704
((.(((((....))))))))	chr7:5340291-5340511(+)$1	1	141	161	17.1601
((.(((((....))))))))	chr14:76070447-76070698(+)$1	1	198	218	16.0935

#PSSM
c : 0.75	b : 0.25	
c : 0.75	b : 0.25	
[ : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
c : 0.50	] : 0.25	b : 0.25	
c : 0.75	b : 0.25	
c : 0.75	d : 0.25	

#score	67.484366752075
#seq	4
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_CDS_m1_run2.txt

#BEAR
iiiiiiyyyyyyyyyyyyyyyyiiiii	chr12:10870520-10870830(-)$1	310	183	210	23.1418
eeeeeeeeettttttttttteeeee]e	chr10:50708442-50708691(-)$1	249	134	161	22.8981
ffffdddduuuuuuuuuuuudddd22f	chr3:44847345-44847617(+)$1	272	131	158	23.6092
!!ffffffvvvvvvvvvvvvvffffff	chr3:49335152-49335408(-)$1	256	169	196	23.6788
ddd[ddddwwwwwwwwwwwwwwdddd]	chr6:37259024-37259278(+)$1	254	116	143	22.2625
###eeeeettttttttttteeeeeccc	chr8:103289054-103289347(-)$1	293	68	95	22.5514
[bb[dddduuuuuuuuuuuudddd]bb	chr21:47699744-47700012(-)$1	268	196	223	23.3789
gggggg[auuuuuuuuuuuua]ggggg	chr7:44839362-44839615(+)$1	253	165	192	24.9784
[a[fffffftttttttttttffffff]	chr20:60699728-60700000(+)$1	272	196	223	23.3455
i!!eeeeeuuuuuuuuuuuueeeee55	chr6:134303874-134304162(+)$1	288	101	128	23.1362
ccc[ddddtttttttttttdddd]ccc	chr16:84101007-84101375(-)$1	368	224	251	22.6113
"ggggggguuuuuuuuuuuuggggggg	chr5:40777403-40777649(-)$1	246	149	176	24.7885
hhh[eeeeettttttttttteeeeehh	chr12:6675515-6675808(-)$1	293	221	248	22.5567
""ddddyyyyyyyyyyyyyyyydddd4	chr16:11849956-11850224(-)$1	268	7	34	21.9795
[ffffffvvvvvvvvvvvvvffffff]	chr1:145441070-145441318(+)$1	248	119	146	23.6054
ccffffffvvvvvvvvvvvvvffffff	chr18:216340-216609(-)$1	269	136	163	23.5667
eeeee[bbuuuuuuuuuuuubb]eeee	chr9:135981884-135982141(-)$1	257	158	185	23.5267
ee:eeeeevvvvvvvvvvvvveeeee:	chr16:89812815-89813094(-)$1	279	156	183	21.2873
ffff[ddddtttttttttttddddfff	chr2:272041-272306(+)$1	265	214	241	22.8071
#bb!!cccuuuuuuuuuuuuccc22bb	chr6:30572177-30572449(-)$1	272	77	104	22.8434
ccc[dddduuuuuuuuuuuudddd444	chr2:27257868-27258121(+)$1	253	217	244	24.3767
cceeeeexxxxxxxxxxxxxxxeeeee	chr10:70100960-70101212(+)$1	252	78	105	18.4570
cc!!ddddvvvvvvvvvvvvvdddd22	chr7:100172788-100173072(-)$1	284	121	148	23.1409
#gggggggtttttttttttggggggg]	chr5:95124410-95124689(+)$1	279	128	155	23.1575
hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr19:59060118-59060378(+)$1	260	87	114	21.4160
[ffffffxxxxxxxxxxxxxxxfffff	chr1:26611767-26612052(-)$1	285	202	229	18.7283
:ggggggguuuuuuuuuuuuggggggg	chr12:56504374-56504632(+)$1	258	39	66	23.7545
ccceeeeeuuuuuuuuuuuueeeee55	chr19:4024006-4024255(+)$1	249	147	174	23.0282
gggggggvvvvvvvvvvvvvggggggg	chr19:46177325-46177575(+)$1	250	190	217	23.8050
eee[dddduuuuuuuuuuuudddd333	chr21:47822269-47822527(+)$1	258	19	46	24.3358
======yyyyyyyyyyyyyyyy=====	chr2:64335236-64335527(-)$1	291	235	262	23.3565
bb!!dddduuuuuuuuuuuudddd22b	chr3:42681119-42681386(+)$1	267	210	237	23.1140
gggggg[bbtttttttttttbb]gggg	chr2:27884138-27884377(-)$1	239	62	89	23.1820
========wwwwwwwwwwwwww=====	chr7:128394422-128394703(+)$1	281	147	174	23.5768
cc!!dddduuuuuuuuuuuuddddccc	chr1:205130234-205130503(-)$1	269	9	36	24.1714
[ddddddddtttttttttttdddd444	chr3:193854644-193854870(+)$1	226	42	69	22.5405
========uuuuuuuuuuuu=======	chr10:11567235-11567497(-)$1	262	172	199	25.1351
hhhhh[bbuuuuuuuuuuuubb]hhhh	chr7:105135445-105135731(-)$1	286	154	181	22.3615
iiiiiiiivvvvvvvvvvvvviiiiii	chr11:65384174-65384427(+)$1	253	95	122	23.9950
ffffffyyyyyyyyyyyyyyyyfffff	chr20:44567864-44568124(+)$1	260	35	62	22.6004
ffffffyyyyyyyyyyyyyyyyfffff	chr9:33948230-33948500(-)$1	270	79	106	22.6004
eeee[bbvvvvvvvvvvvvvbb]eeee	chrX:128701219-128701499(+)$1	280	217	244	22.3346
::ffffffvvvvvvvvvvvvvffffff	chr2:118583850-118584169(+)$1	319	100	127	21.4961
DDddddbbuuuuuuuuuuuubb]dddd	chrX:47100742-47100983(+)$1	241	68	95	20.6674
dddd!!bbtttttttttttbb22dddd	chr3:47884617-47884903(+)$1	286	45	72	20.6363
ccc[eeeeettttttttttteeeee22	chr16:1907489-1907848(-)$1	359	232	259	23.2075
dddfffffftttttttttttffffff]	chr10:114193855-114194161(-)$1	306	190	217	22.7619
gggggggvvvvvvvvvvvvvggggggg	chr14:20940512-20940851(+)$1	339	51	78	23.8050
ccffffffuuuuuuuuuuuuffffff2	chr9:114685094-114685375(+)$1	281	130	157	24.2787
=====cccuuuuuuuuuuuuccc4444	chr1:78204807-78205061(-)$1	254	190	217	24.6038
eeee!!bbuuuuuuuuuuuubbeeeee	chr7:2406525-2406817(+)$1	292	82	109	23.4514
e[ffffffwwwwwwwwwwwwwwfffff	chr1:53343480-53343726(+)$1	246	43	70	22.8226
========wwwwwwwwwwwwww=====	chrX:53615204-53615448(-)$1	244	82	109	23.5768
d[ffffffuuuuuuuuuuuuffffff]	chr6:85466198-85466526(-)$1	328	239	266	24.4168
ggggdddduuuuuuuuuuuudddd000	chr6:168315712-168315955(+)$1	243	91	118	23.1723
[ffffffvvvvvvvvvvvvvffffff]	chr1:203807081-203807434(+)$1	353	223	250	23.6054
ggggeeeeettttttttttteeeee]g	chr1:100184956-100185198(-)$1	242	175	202	23.5486
b[ffffffuuuuuuuuuuuuffffff]	chr12:120636449-120636702(-)$1	253	21	48	24.3118
fffffcccyyyyyyyyyyyyyyyyccc	chr3:185390137-185390435(-)$1	298	269	296	21.7139
iiiiiiiiitttttttttttiiiiiii	chr5:158621582-158621832(-)$1	250	16	43	23.2011

#otherMatches

#Seq PSSM
GAGGGUGUGUAAUCUUCUGUCAGCCCU	chr12:10870520-10870830(-)$1	310	183	210	23.1418
UCUGUGGAGCUCAAUUAAUAUUUCAUC	chr10:50708442-50708691(-)$1	249	134	161	22.8981
AGGUAGGUCAUCUGAACAAUACCUCCA	chr3:44847345-44847617(+)$1	272	131	158	23.6092
AUUCAUAUCUCCAGAACAAAAAUGUGG	chr3:49335152-49335408(-)$1	256	169	196	23.6788
GCAUUAGUACCAAGCUGAACAAGCUAU	chr6:37259024-37259278(+)$1	254	116	143	22.2625
CUUGCUGCACAAUUAAAAAGUAGCUUA	chr8:103289054-103289347(-)$1	293	68	95	22.5514
GGAGUGGUGAGGAGACAAAAGCCAGUU	chr21:47699744-47700012(-)$1	268	196	223	23.3789
GGGGAACGGAACAAACACUACUUUUCU	chr7:44839362-44839615(+)$1	253	165	192	24.9784
UGUGAGGAAUAACCuuuuuuuuuuuuu	chr20:60699728-60700000(+)$1	272	196	223	23.3455
UGCCAGACGCUUAGCCCGUAGUCUGCA	chr6:134303874-134304162(+)$1	288	101	128	23.1362
GAGAGCUUGAUUAGAAAAAAAGCCCUU	chr16:84101007-84101375(-)$1	368	224	251	22.6113
UUUUGUUAACCUACUUAAUGUGACAAG	chr5:40777403-40777649(-)$1	246	149	176	24.7885
CUGAGGGGUAGAAAGUACAGGCUCCCA	chr12:6675515-6675808(-)$1	293	221	248	22.5567
UGGAGCAAUUUUACGAACUAUGGCUCA	chr16:11849956-11850224(-)$1	268	7	34	21.9795
CCUGCAUCCUCAACAACAAUGUGCAGU	chr1:145441070-145441318(+)$1	248	119	146	23.6054
GAUCAACUUUUCAUACCCUUUAGUUGA	chr18:216340-216609(-)$1	269	136	163	23.5667
GGGCUGGCAUCACCCCCUUAGUGAGCC	chr9:135981884-135982141(-)$1	257	158	185	23.5267
ACAGCUGCCUCUGGCAUCUCUGCAGCA	chr16:89812815-89813094(-)$1	279	156	183	21.2873
UGAGCUGCCUAAGAAAUCAUGGCAUUC	chr2:272041-272306(+)$1	265	214	241	22.8071
GGAUACAGGUAAUCUAGAAACUGGUUC	chr6:30572177-30572449(-)$1	272	77	104	22.8434
GGCCAGCUAUCUCAACUACAAGCUACA	chr2:27257868-27258121(+)$1	253	217	244	24.3767
GCCAUGUCUAAAGAUAAAAAUAACAUG	chr10:70100960-70101212(+)$1	252	78	105	18.4570
UCCACCUGCUCUCCUCUCCCCCAGGCU	chr7:100172788-100173072(-)$1	284	121	148	23.1409
AGCCUGAAUUUCAGGAUCUUUCAGGUA	chr5:95124410-95124689(+)$1	279	128	155	23.1575
GUCUUCUUUCUCCAUUUUCUAAGGAGA	chr19:59060118-59060378(+)$1	260	87	114	21.4160
CUGGGGGACCCCAGUCUGAUGCCCUCC	chr1:26611767-26612052(-)$1	285	202	229	18.7283
AACUUCACGUGCCUUCUUCAGUGAGGU	chr12:56504374-56504632(+)$1	258	39	66	23.7545
CCCGCCCACCCACUUUCUCCUGGGCUC	chr19:4024006-4024255(+)$1	249	147	174	23.0282
CCACCAGGUCCAGCUAUCCACUGGUGG	chr19:46177325-46177575(+)$1	250	190	217	23.8050
AGAAAGUAAAAAUGAAGAAAUACUACA	chr21:47822269-47822527(+)$1	258	19	46	24.3358
UUGGAauuuauaucuuaccugcuucca	chr2:64335236-64335527(-)$1	291	235	262	23.3565
cuauuuccaaauaucugaaaggaauaa	chr3:42681119-42681386(+)$1	267	210	237	23.1140
UUUAGGUUAUUGUCUACAUUUAUCCUG	chr2:27884138-27884377(-)$1	239	62	89	23.1820
UUUUGUCUUGUAGAAUGAUUGUAGAUA	chr7:128394422-128394703(+)$1	281	147	174	23.5768
CGGUUAGAGAAAACGGAAGAUCUAUGG	chr1:205130234-205130503(-)$1	269	9	36	24.1714
ACCCCCAGCACUCUGAAGCAGCUGACA	chr3:193854644-193854870(+)$1	226	42	69	22.5405
UAUAUUGAUUUUCUUUAUUUUUAAUAU	chr10:11567235-11567497(-)$1	262	172	199	25.1351
UUGUUAUGCCUAUACAAAAUCAAAGCA	chr7:105135445-105135731(-)$1	286	154	181	22.3615
GGACCUGGCUUACUUUCAUCUUCAGGU	chr11:65384174-65384427(+)$1	253	95	122	23.9950
GAAUCGUCCCUACUACUUCAACCGAUU	chr20:44567864-44568124(+)$1	260	35	62	22.6004
UUGGGACCUCAAGCCCCCAACAUCCCA	chr9:33948230-33948500(-)$1	270	79	106	22.6004
CCAUAAGCAGAUAUAUAAACCUAAUGG	chrX:128701219-128701499(+)$1	280	217	244	22.3346
AAUCCAAGGUAAAGAUCUGUACUUGGA	chr2:118583850-118584169(+)$1	319	100	127	21.4961
UCUGGCCACCACCGCUCCAUUGUGCCA	chrX:47100742-47100983(+)$1	241	68	95	20.6674
GCCCCAUGACCUUUGUUGCCAAAGGGC	chr3:47884617-47884903(+)$1	286	45	72	20.6363
AGUAUGCUGAAUUAAGAAAACAGUAAC	chr16:1907489-1907848(-)$1	359	232	259	23.2075
AGUAAAAUAAGUAAUAUGAAUGUUUUC	chr10:114193855-114194161(-)$1	306	190	217	22.7619
GGUCUGACUGAUAAAUUAACUCAGGCC	chr14:20940512-20940851(+)$1	339	51	78	23.8050
UUUAUAGGUAAGUAACAAAUUCUGUAG	chr9:114685094-114685375(+)$1	281	130	157	24.2787
UCAAAAGGAAUACUGCCUAACCUGUAC	chr1:78204807-78205061(-)$1	254	190	217	24.6038
CUGCAGCCUUCCUUUUUUUUGGGCAGU	chr7:2406525-2406817(+)$1	292	82	109	23.4514
ACAGGAUUGAGUUUAUAUGUAAAGUUC	chr1:53343480-53343726(+)$1	246	43	70	22.8226
CUUGCUUUUAACGCUACUUUUUGAGGU	chrX:53615204-53615448(-)$1	244	82	109	23.5768
UUUGCAGAAUCAAGUUUAUAUUUGCAU	chr6:85466198-85466526(-)$1	328	239	266	24.4168
GGAUGACAUUUUGCUCCUCUUGUCCUC	chr6:168315712-168315955(+)$1	243	91	118	23.1723
AUUUGUUAUAuuauucacucaacaaac	chr1:203807081-203807434(+)$1	353	223	250	23.6054
GAAUGGCUGUGGGUAUAAUGUAGCUAA	chr1:100184956-100185198(-)$1	242	175	202	23.5486
CUCCAGGGGCACCAUUGAAAUCCUGGU	chr12:120636449-120636702(-)$1	253	21	48	24.3118
CCUAAUGGGCAACUUAAUAUUAAACCA	chr3:185390137-185390435(-)$1	298	269	296	21.7139
GGUGCUGCUAACAUUGCCCAGGCAGCA	chr5:158621582-158621832(-)$1	250	16	43	23.2011

#DB
((((((................)))))	chr12:10870520-10870830(-)$1	1	183	210	23.1418
(((((((((...........))))).)	chr10:50708442-50708691(-)$1	1	134	161	22.8981
((((((((............))))..)	chr3:44847345-44847617(+)$1	1	131	158	23.6092
..((((((.............))))))	chr3:49335152-49335408(-)$1	1	169	196	23.6788
(((.((((..............)))).	chr6:37259024-37259278(+)$1	1	116	143	22.2625
...(((((...........))))))))	chr8:103289054-103289347(-)$1	1	68	95	22.5514
.((.((((............)))).))	chr21:47699744-47700012(-)$1	1	196	223	23.3789
((((((.(............).)))))	chr7:44839362-44839615(+)$1	1	165	192	24.9784
.(.((((((...........)))))).	chr20:60699728-60700000(+)$1	1	196	223	23.3455
(..(((((............)))))..	chr6:134303874-134304162(+)$1	1	101	128	23.1362
(((.((((...........)))).)))	chr16:84101007-84101375(-)$1	1	224	251	22.6113
.(((((((............)))))))	chr5:40777403-40777649(-)$1	1	149	176	24.7885
(((.(((((...........)))))))	chr12:6675515-6675808(-)$1	1	221	248	22.5567
..((((................)))).	chr16:11849956-11850224(-)$1	1	7	34	21.9795
.((((((.............)))))).	chr1:145441070-145441318(+)$1	1	119	146	23.6054
((((((((.............))))))	chr18:216340-216609(-)$1	1	136	163	23.5667
(((((.((............)).))))	chr9:135981884-135982141(-)$1	1	158	185	23.5267
)).(((((.............))))).	chr16:89812815-89813094(-)$1	1	156	183	21.2873
((((.((((...........)))))))	chr2:272041-272306(+)$1	1	214	241	22.8071
.((..(((............)))..))	chr6:30572177-30572449(-)$1	1	77	104	22.8434
(((.((((............))))...	chr2:27257868-27258121(+)$1	1	217	244	24.3767
(((((((...............)))))	chr10:70100960-70101212(+)$1	1	78	105	18.4570
((..((((.............))))..	chr7:100172788-100173072(-)$1	1	121	148	23.1409
.(((((((...........))))))).	chr5:95124410-95124689(+)$1	1	128	155	23.1575
((((((((............)))))))	chr19:59060118-59060378(+)$1	1	87	114	21.4160
.((((((...............)))))	chr1:26611767-26612052(-)$1	1	202	229	18.7283
.(((((((............)))))))	chr12:56504374-56504632(+)$1	1	39	66	23.7545
((((((((............)))))..	chr19:4024006-4024255(+)$1	1	147	174	23.0282
(((((((.............)))))))	chr19:46177325-46177575(+)$1	1	190	217	23.8050
(((.((((............))))...	chr21:47822269-47822527(+)$1	1	19	46	24.3358
((((((................)))))	chr2:64335236-64335527(-)$1	1	235	262	23.3565
((..((((............))))..)	chr3:42681119-42681386(+)$1	1	210	237	23.1140
((((((.((...........)).))))	chr2:27884138-27884377(-)$1	1	62	89	23.1820
((((((((..............)))))	chr7:128394422-128394703(+)$1	1	147	174	23.5768
((..((((............)))))))	chr1:205130234-205130503(-)$1	1	9	36	24.1714
.((((((((...........))))...	chr3:193854644-193854870(+)$1	1	42	69	22.5405
((((((((............)))))))	chr10:11567235-11567497(-)$1	1	172	199	25.1351
(((((.((............)).))))	chr7:105135445-105135731(-)$1	1	154	181	22.3615
((((((((.............))))))	chr11:65384174-65384427(+)$1	1	95	122	23.9950
((((((................)))))	chr20:44567864-44568124(+)$1	1	35	62	22.6004
((((((................)))))	chr9:33948230-33948500(-)$1	1	79	106	22.6004
((((.((.............)).))))	chrX:128701219-128701499(+)$1	1	217	244	22.3346
..((((((.............))))))	chr2:118583850-118584169(+)$1	1	100	127	21.4961
((((((((............)).))))	chrX:47100742-47100983(+)$1	1	68	95	20.6674
((((..((...........))..))))	chr3:47884617-47884903(+)$1	1	45	72	20.6363
(((.(((((...........)))))..	chr16:1907489-1907848(-)$1	1	232	259	23.2075
(((((((((...........)))))).	chr10:114193855-114194161(-)$1	1	190	217	22.7619
(((((((.............)))))))	chr14:20940512-20940851(+)$1	1	51	78	23.8050
((((((((............)))))).	chr9:114685094-114685375(+)$1	1	130	157	24.2787
((((((((............)))....	chr1:78204807-78205061(-)$1	1	190	217	24.6038
((((..((............)))))))	chr7:2406525-2406817(+)$1	1	82	109	23.4514
(.((((((..............)))))	chr1:53343480-53343726(+)$1	1	43	70	22.8226
((((((((..............)))))	chrX:53615204-53615448(-)$1	1	82	109	23.5768
(.((((((............)))))).	chr6:85466198-85466526(-)$1	1	239	266	24.4168
((((((((............))))...	chr6:168315712-168315955(+)$1	1	91	118	23.1723
.((((((.............)))))).	chr1:203807081-203807434(+)$1	1	223	250	23.6054
(((((((((...........))))).)	chr1:100184956-100185198(-)$1	1	175	202	23.5486
(.((((((............)))))).	chr12:120636449-120636702(-)$1	1	21	48	24.3118
)))))(((................)))	chr3:185390137-185390435(-)$1	1	269	296	21.7139
(((((((((...........)))))))	chr5:158621582-158621832(-)$1	1	16	43	23.2011

#PSSM
c : 0.15	e : 0.11	[ : 0.09	g : 0.09	f : 0.08	= : 0.08	i : 0.06	d : 0.06	# : 0.05	h : 0.05	" : 0.03	: : 0.03	b : 0.03	! : 0.01	D : 0.01	
g : 0.15	c : 0.15	f : 0.13	e : 0.09	= : 0.08	d : 0.06	i : 0.05	b : 0.05	h : 0.05	[ : 0.05	! : 0.03	# : 0.01	a : 0.01	" : 0.01	: : 0.01	D : 0.01	
f : 0.24	g : 0.15	e : 0.09	d : 0.09	= : 0.08	! : 0.06	c : 0.06	i : 0.05	h : 0.05	b : 0.03	# : 0.01	[ : 0.01	: : 0.01	
f : 0.28	e : 0.15	g : 0.15	[ : 0.11	= : 0.08	d : 0.06	! : 0.06	i : 0.05	h : 0.03	
f : 0.24	d : 0.21	e : 0.16	g : 0.11	= : 0.08	i : 0.05	! : 0.05	[ : 0.03	h : 0.03	
d : 0.23	f : 0.23	e : 0.15	g : 0.11	= : 0.06	i : 0.05	c : 0.05	[ : 0.03	! : 0.03	h : 0.01	b : 0.01	
d : 0.19	f : 0.19	e : 0.15	b : 0.09	y : 0.08	g : 0.08	c : 0.05	= : 0.05	[ : 0.03	i : 0.03	h : 0.01	
d : 0.19	f : 0.15	e : 0.13	b : 0.09	y : 0.08	v : 0.08	g : 0.05	c : 0.05	= : 0.05	x : 0.03	i : 0.03	a : 0.01	h : 0.01	
u : 0.38	v : 0.18	y : 0.09	e : 0.06	w : 0.06	t : 0.06	f : 0.03	d : 0.03	x : 0.03	b : 0.01	i : 0.01	
u : 0.38	t : 0.23	v : 0.18	y : 0.09	w : 0.06	x : 0.03	
u : 0.38	t : 0.23	v : 0.18	y : 0.09	w : 0.06	x : 0.03	
u : 0.38	t : 0.23	v : 0.18	y : 0.09	w : 0.06	x : 0.03	
u : 0.38	t : 0.23	v : 0.18	y : 0.09	w : 0.06	x : 0.03	
u : 0.38	t : 0.23	v : 0.18	y : 0.09	w : 0.06	x : 0.03	
u : 0.38	t : 0.23	v : 0.18	y : 0.09	w : 0.06	x : 0.03	
u : 0.38	t : 0.23	v : 0.18	y : 0.09	w : 0.06	x : 0.03	
u : 0.38	t : 0.23	v : 0.18	y : 0.09	w : 0.06	x : 0.03	
u : 0.38	t : 0.23	v : 0.18	y : 0.09	w : 0.06	x : 0.03	
u : 0.38	t : 0.23	v : 0.18	y : 0.09	w : 0.06	x : 0.03	
u : 0.38	v : 0.18	t : 0.16	y : 0.09	w : 0.06	x : 0.03	e : 0.01	d : 0.01	g : 0.01	b : 0.01	
d : 0.16	e : 0.11	f : 0.11	b : 0.11	y : 0.09	v : 0.09	g : 0.08	w : 0.06	c : 0.03	x : 0.03	a : 0.01	h : 0.01	= : 0.01	i : 0.01	
d : 0.18	f : 0.16	e : 0.13	y : 0.09	b : 0.09	g : 0.08	w : 0.06	c : 0.03	x : 0.03	i : 0.03	] : 0.01	h : 0.01	= : 0.01	2 : 0.01	
f : 0.23	d : 0.21	e : 0.16	g : 0.09	] : 0.08	= : 0.06	i : 0.05	c : 0.03	h : 0.01	2 : 0.01	y : 0.01	
d : 0.23	f : 0.23	e : 0.19	g : 0.11	= : 0.06	i : 0.05	h : 0.03	] : 0.01	2 : 0.01	4 : 0.01	y : 0.01	
f : 0.24	e : 0.18	g : 0.11	d : 0.08	c : 0.06	= : 0.06	i : 0.05	2 : 0.05	4 : 0.05	h : 0.03	] : 0.01	3 : 0.01	0 : 0.01	
f : 0.24	g : 0.11	e : 0.08	2 : 0.06	d : 0.06	c : 0.06	= : 0.06	i : 0.05	h : 0.05	4 : 0.05	] : 0.03	b : 0.03	5 : 0.03	3 : 0.01	0 : 0.01	
f : 0.15	] : 0.13	g : 0.11	e : 0.08	c : 0.06	4 : 0.06	= : 0.06	i : 0.05	b : 0.05	h : 0.05	2 : 0.05	5 : 0.03	d : 0.03	: : 0.01	3 : 0.01	0 : 0.01	

#score	1381.0017919279578
#seq	60
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_transcript_m3_run1.txt

#BEAR
ccc!!ffffffnnnnnffffff22cc	chr22:36908423-36908684(-)$1	261	229	255	12.6774
c"""gggggggnnnnnggggggg]cc	chr14:65253711-65253966(-)$1	255	38	64	13.3873
[eeeeeeeeeennnnneeeee]eeee	chr2:32582180-32582466(+)$1	286	215	241	12.5456
fa[ffffff[annnnna]ffffff]a	chr14:102478675-102478905(+)$1	230	45	71	11.8908
:cccccc[cccnnnnnccc4444ccc	chr12:57892101-57892345(+)$1	244	202	228	12.0353
eeeee[eeeeennnnneeeee22eee	chr9:35700222-35700470(-)$1	248	94	120	12.6981
eeee!!eeeeennnnneeeee22eee	chr8:48748884-48749138(-)$1	254	7	33	13.0796
ggggggg!!bbnnnnnbb]ggggggg	chr15:30114348-30114698(-)$1	350	116	142	12.6937
c[iiiiiiiiinnnnniiiiiiiiic	chr12:113596468-113596739(-)$1	271	131	157	12.9751
!ccc[ffffffnnnnnffffffccc3	chr10:129924262-129924530(-)$1	268	182	208	12.5760
ggg[gggggggnnnnnggggggg]gg	chr14:102473244-102473455(+)$1	211	8	34	13.3025
aeeeee[ddddnnnnndddd]eeeee	chr17:78338165-78338446(+)$1	281	10	36	11.9101
f!!gggggggoooooogggggggfff	chr2:198273156-198273403(-)$1	247	30	56	8.2175
bb]eeeeecccnnnnncccddddlll	chr19:8550821-8551134(+)$1	313	124	150	10.7559
gggggccc[bbnnnnnbb]ccc333g	chr9:35704573-35704789(-)$1	216	142	168	12.9728
e:eeeee[cccnnnnnccc]eeeee:	chr14:102451923-102452146(+)$1	223	31	57	11.0220
ddd"""eeeeennnnneeeee22ddd	chr5:145537007-145537271(-)$1	264	195	221	12.6698
b[eeeee[cccnnnnnccceeeee]b	chr17:78261720-78261973(+)$1	253	106	132	12.6080
ddd[ddddcccnnnnnccc]dddd66	chr1:16258648-16258907(+)$1	259	118	144	11.2346
b[dddd[ddddnnnnnddddddddbb	chr9:131742850-131743098(+)$1	248	29	55	11.0259
fffffffffffnnnnnffffffcccb	chr11:61077764-61077990(-)$1	226	66	92	11.2426
ccdddd[a[bbnnnnnbba]dddd22	chr8:48801029-48801286(-)$1	257	75	101	11.4300
!!bb!!eeeeennnnneeeee22bb2	chr16:70578275-70578533(+)$1	258	56	82	12.7921
a[bb[dddd[annnnna]dddd]bb]	chr17:49197796-49198111(-)$1	315	214	240	12.0410
!ccc!!eeeeennnnneeeee4444c	chr3:184040893-184041119(+)$1	226	170	196	13.7670
ccc[dddd[bbnnnnnbb22ddddcc	chr16:85696959-85697233(+)$1	274	125	151	11.7801
bbbb[ffffffnnnnnffffff333b	chr7:135291896-135292140(+)$1	244	129	155	12.0901
ccccc!!ddddnnnnndddd22ccc]	chr1:19481329-19481569(-)$1	240	55	81	12.3862
&bb[gggggggnnnnngggggggbb7	chr9:35714687-35714900(-)$1	213	25	51	11.6324
eeee[bb[cccnnnnncccbb]eeee	chr22:23523887-23524146(+)$1	259	47	73	11.7781
ee[a!!eeeeennnnneeeee22a]e	chr19:15512111-15512411(-)$1	300	228	254	13.3430
a[bb[ccc[bbnnnnnbbccc]bb]a	chr17:1587699-1587950(-)$1	251	143	169	12.0893
$$ggggggg[annnnna]ggggggg]	chr7:56119417-56119678(+)$1	261	176	202	12.9366
[bb"""cccbbnnnnnbb]ccc22bb	chr16:70588909-70589207(+)$1	298	48	74	12.2523
bb!!gggggggooooooggggggg22	chr16:88636823-88637069(+)$1	246	204	230	8.2718
eeee!!a[cccnnnnnccc]a22eee	chr3:51533784-51534078(-)$1	294	28	54	13.1866
ggg[gggggggnnnnnggggggg666	chr5:137903237-137903457(-)$1	220	58	84	12.1036
eeee[bb[cccnnnnncccbb]eeee	chr22:23523822-23524087(+)$1	265	112	138	11.7781
eeeee!!ddddnnnnndddd]eeeee	chr17:1561879-1562127(-)$1	248	70	96	12.0244
[ccc[ccc[bbnnnnnbbccc]ccc]	chr1:12061394-12061661(+)$1	267	113	139	12.9351
cc[eeeee!!annnnna22eeeee]c	chr14:65253082-65253369(-)$1	287	150	176	12.6096
e####ffffffnnnnnffffff333e	chr10:120824833-120825053(-)$1	220	131	157	12.8634
!bb####ddddnnnnndddd4444bb	chrX:153589673-153589896(-)$1	223	149	175	12.3407
#bb[a!!ddddnnnnndddd22abb2	chrX:153583335-153583540(-)$1	205	28	54	11.8813
%%%%gggggggnnnnnggggggg===	chr6:31762791-31763080(-)$1	289	137	163	11.0097
iiiiii[bbbbnnnnnbb22bb]iii	chr19:17303675-17303972(+)$1	297	12	38	11.0480
fff[dddd!!annnnna22dddd333	chr9:71835819-71836063(+)$1	244	101	127	12.2603
ccc[dddd[bbnnnnnbb22dddd]c	chr11:122930080-122930292(-)$1	212	36	62	11.8539
dd####eeeeennnnneeeee333dd	chr5:140908638-140908867(-)$1	229	8	34	13.1867
ccc####ddddnnnnndddd333ccc	chr9:134351367-134351607(+)$1	240	80	106	13.2080
"ccc[eeeeeannnnna]eeeee]cc	chr19:19021679-19021905(-)$1	226	33	59	13.2483

#otherMatches

#Seq PSSM
GGGUAGGGAGGUUGACCCUCCCCUCC	chr22:36908423-36908684(-)$1	261	229	255	12.6774
GCUAAGGGAGAAGGUGUCUCUCUCCU	chr14:65253711-65253966(-)$1	255	38	64	13.3873
UGGUGCUGCGGGACGGCUGCAUGCAC	chr2:32582180-32582466(+)$1	286	215	241	12.5456
GAGUGGGUUGAGAACUUGAACUCAGU	chr14:102478675-102478905(+)$1	230	45	71	11.8908
AGGAGAUCUGCGACAAGUACCACAUC	chr12:57892101-57892345(+)$1	244	202	228	12.0353
CAGGUUUUCUGUUCCCCAGAGCCACC	chr9:35700222-35700470(-)$1	248	94	120	12.6981
UUCAUUUGAAACUUUAUUUCAUUUGA	chr8:48748884-48749138(-)$1	254	7	33	13.0796
GGCUUCCGAGGAGACGCCGGGAGGCC	chr15:30114348-30114698(-)$1	350	116	142	12.6937
gugugccuggcccugugcugggcacu	chr12:113596468-113596739(-)$1	271	131	157	12.9751
GGACUCCUGGGAGCUGUCCGGGGUCG	chr10:129924262-129924530(-)$1	268	182	208	12.5760
AAAUGAGUUGCUUUUUGUAGUUCUUU	chr14:102473244-102473455(+)$1	211	8	34	13.3025
CCUUGGGUUCCUUGGUGGGAGCCGAG	chr17:78338165-78338446(+)$1	281	10	36	11.9101
UUGAGAAUAAAGAAUAUUAUUUUAAC	chr2:198273156-198273403(-)$1	247	30	56	8.2175
GCCCCGUGAUGGAUCGCAUGGCCACC	chr19:8550821-8551134(+)$1	313	124	150	10.7559
GCAGAUGGUGGGACUGCCUCCAAACU	chr9:35704573-35704789(-)$1	216	142	168	12.9728
ccggcUUAAAAUAAAUUUUAAAGCCU	chr14:102451923-102452146(+)$1	223	31	57	11.0220
GUGAAUGGUGAUAUAUUCAUCUGUAC	chr5:145537007-145537271(-)$1	264	195	221	12.6698
GAGGGUGACGGCCUCUCCGCGCCCAC	chr17:78261720-78261973(+)$1	253	106	132	12.6080
CUGAGGCCACCACUGAGGUGGGCCCC	chr1:16258648-16258907(+)$1	259	118	144	11.2346
CACAGGAGCCAACUUCUGGCCUUGGG	chr9:131742850-131743098(+)$1	248	29	55	11.0259
UGAGAAGGAUGAUGUGCAUUCUCUCU	chr11:61077764-61077990(-)$1	226	66	92	11.2426
CAUUGAGGAGCUUUGUGCCGUCAACU	chr8:48801029-48801286(-)$1	257	75	101	11.4300
UCUGUGCAGAUAGCUGAUCUGGCCAA	chr16:70578275-70578533(+)$1	258	56	82	12.7921
CGCUAUGACGAGGAGGUGGUCAAAGA	chr17:49197796-49198111(-)$1	315	214	240	12.0410
GGAGUGGGAGUGGAUGAUUCCGUGUC	chr3:184040893-184041119(+)$1	226	170	196	13.7670
CAGACGCCUUCACCGAGACUGGCGCU	chr16:85696959-85697233(+)$1	274	125	151	11.7801
CGCCAUUCUAAACAUCUUGGAGAAAG	chr7:135291896-135292140(+)$1	244	129	155	12.0901
UGCAGAUGUUGUUCUUCAGCUAUUGU	chr1:19481329-19481569(-)$1	240	55	81	12.3862
AGCAUGCAGCCAAGCAGGCUGCAGCC	chr9:35714687-35714900(-)$1	213	25	51	11.6324
CCAAUGGCGGUAGCAGGCCCCCUUGG	chr22:23523887-23524146(+)$1	259	47	73	11.7781
GCGCAUGUGGGAAGACCCCAUGGGGG	chr19:15512111-15512411(-)$1	300	228	254	13.3430
CGCUACCGGACUACAUGUCGGAGGAG	chr17:1587699-1587950(-)$1	251	143	169	12.0893
CGGCGCUGGCGGUCAACAUCAGCGCA	chr7:56119417-56119678(+)$1	261	176	202	12.9366
AUCCAGAUGGCAUUCGGCACAUACGA	chr16:70588909-70589207(+)$1	298	48	74	12.2523
ggaggccgccgaggcggcggcggcgg	chr16:88636823-88637069(+)$1	246	204	230	8.2718
CGUAGCGCGCGAGUGACGCAUAAUAU	chr3:51533784-51534078(-)$1	294	28	54	13.1866
GGCACACAGCAAAAAAUGCUGUGAUC	chr5:137903237-137903457(-)$1	220	58	84	12.1036
CCAAUGGCGGUAGCAGGCCCCCUUGG	chr22:23523822-23524087(+)$1	265	112	138	11.7781
UGCCUAUGGAAACUGGUUCCCAGGCA	chr17:1561879-1562127(-)$1	248	70	96	12.0244
GGGCGUGGUGGAUCGAUCCCAGGCCG	chr1:12061394-12061661(+)$1	267	113	139	12.9351
GGAUGUGGGAGAGCCGCAGCCACACC	chr14:65253082-65253369(-)$1	287	150	176	12.6096
AUUAAUGAUAUGGUUAGUAUUAAUUU	chr10:120824833-120825053(-)$1	220	131	157	12.8634
ACCUAUGACGGCGUGCCCGUGCCUGG	chrX:153589673-153589896(-)$1	223	149	175	12.3407
AGGCGGACGGGAACAACCUGAACCCG	chrX:153583335-153583540(-)$1	205	28	54	11.8813
GCCCUCAUAGCCGCUCGCUAUGGGGA	chr6:31762791-31763080(-)$1	289	137	163	11.0097
CCGCCGUCACCAUCCAGGCCUGCUGG	chr19:17303675-17303972(+)$1	297	12	38	11.0480
GCUACAGCGAGAGGAGCCGGCUGAAC	chr9:71835819-71836063(+)$1	244	101	127	12.2603
CUUCUCCAAGACUUCUUCAAUGGAAA	chr11:122930080-122930292(-)$1	212	36	62	11.8539
UGUCUCUUCUGUCUUUCAGAACCUCA	chr5:140908638-140908867(-)$1	229	8	34	13.1867
CUCGAUUCCGGCGCCUCCGGCAAGAG	chr9:134351367-134351607(+)$1	240	80	106	13.2080
CGGUGUGGUCCUGGAUGAGAUCAAGC	chr19:19021679-19021905(-)$1	226	33	59	13.2483

#DB
(((..((((((.....))))))..))	chr22:36908423-36908684(-)$1	1	229	255	12.6774
(...(((((((.....))))))).))	chr14:65253711-65253966(-)$1	1	38	64	13.3873
.((((((((((.....))))).))))	chr2:32582180-32582466(+)$1	1	215	241	12.5456
((.((((((.(.....).)))))).)	chr14:102478675-102478905(+)$1	1	45	71	11.8908
.((((((.(((.....)))....)))	chr12:57892101-57892345(+)$1	1	202	228	12.0353
(((((.(((((.....)))))..)))	chr9:35700222-35700470(-)$1	1	94	120	12.6981
((((..(((((.....)))))..)))	chr8:48748884-48749138(-)$1	1	7	33	13.0796
(((((((..((.....)).)))))))	chr15:30114348-30114698(-)$1	1	116	142	12.6937
(.(((((((((.....))))))))))	chr12:113596468-113596739(-)$1	1	131	157	12.9751
.(((.((((((.....))))))))).	chr10:129924262-129924530(-)$1	1	182	208	12.5760
(((.(((((((.....))))))).))	chr14:102473244-102473455(+)$1	1	8	34	13.3025
((((((.((((.....)))).)))))	chr17:78338165-78338446(+)$1	1	10	36	11.9101
(..(((((((......))))))))))	chr2:198273156-198273403(-)$1	1	30	56	8.2175
)).)))))(((.....)))((((...	chr19:8550821-8551134(+)$1	1	124	150	10.7559
((((((((.((.....)).)))...)	chr9:35704573-35704789(-)$1	1	142	168	12.9728
).(((((.(((.....))).))))).	chr14:102451923-102452146(+)$1	1	31	57	11.0220
(((...(((((.....)))))..)))	chr5:145537007-145537271(-)$1	1	195	221	12.6698
(.(((((.(((.....)))))))).)	chr17:78261720-78261973(+)$1	1	106	132	12.6080
(((.(((((((.....))).))))..	chr1:16258648-16258907(+)$1	1	118	144	11.2346
(.((((.((((.....))))))))))	chr9:131742850-131743098(+)$1	1	29	55	11.0259
)))))((((((.....))))))((((	chr11:61077764-61077990(-)$1	1	66	92	11.2426
((((((.(.((.....))).))))..	chr8:48801029-48801286(-)$1	1	75	101	11.4300
..((..(((((.....)))))..)).	chr16:70578275-70578533(+)$1	1	56	82	12.7921
(.((.((((.(.....).)))).)).	chr17:49197796-49198111(-)$1	1	214	240	12.0410
.(((..(((((.....)))))....)	chr3:184040893-184041119(+)$1	1	170	196	13.7670
(((.((((.((.....))..))))))	chr16:85696959-85697233(+)$1	1	125	151	11.7801
((((.((((((.....))))))...)	chr7:135291896-135292140(+)$1	1	129	155	12.0901
(((((..((((.....))))..))).	chr1:19481329-19481569(-)$1	1	55	81	12.3862
.((.(((((((.....))))))))).	chr9:35714687-35714900(-)$1	1	25	51	11.6324
((((.((.(((.....))))).))))	chr22:23523887-23524146(+)$1	1	47	73	11.7781
((.(..(((((.....)))))..).)	chr19:15512111-15512411(-)$1	1	228	254	13.3430
(.((.(((.((.....))))).)).)	chr17:1587699-1587950(-)$1	1	143	169	12.0893
..(((((((.(.....).))))))).	chr7:56119417-56119678(+)$1	1	176	202	12.9366
.((...(((((.....)).)))..))	chr16:70588909-70589207(+)$1	1	48	74	12.2523
((..(((((((......)))))))..	chr16:88636823-88637069(+)$1	1	204	230	8.2718
((((..(.(((.....))).)..)))	chr3:51533784-51534078(-)$1	1	28	54	13.1866
(((.(((((((.....)))))))...	chr5:137903237-137903457(-)$1	1	58	84	12.1036
((((.((.(((.....))))).))))	chr22:23523822-23524087(+)$1	1	112	138	11.7781
(((((..((((.....)))).)))))	chr17:1561879-1562127(-)$1	1	70	96	12.0244
.(((.(((.((.....))))).))).	chr1:12061394-12061661(+)$1	1	113	139	12.9351
((.(((((..(.....)..))))).)	chr14:65253082-65253369(-)$1	1	150	176	12.6096
(....((((((.....))))))...)	chr10:120824833-120825053(-)$1	1	131	157	12.8634
.((....((((.....))))....))	chrX:153589673-153589896(-)$1	1	149	175	12.3407
.((.(..((((.....))))..))).	chrX:153583335-153583540(-)$1	1	28	54	11.8813
....(((((((.....))))))))))	chr6:31762791-31763080(-)$1	1	137	163	11.0097
((((((.((((.....))..)).)))	chr19:17303675-17303972(+)$1	1	12	38	11.0480
(((.((((..(.....)..))))...	chr9:71835819-71836063(+)$1	1	101	127	12.2603
(((.((((.((.....))..)))).)	chr11:122930080-122930292(-)$1	1	36	62	11.8539
((....(((((.....)))))...))	chr5:140908638-140908867(-)$1	1	8	34	13.1867
(((....((((.....))))...)))	chr9:134351367-134351607(+)$1	1	80	106	13.2080
.(((.((((((.....).))))).))	chr19:19021679-19021905(-)$1	1	33	59	13.2483

#PSSM
c : 0.17	e : 0.17	b : 0.09	f : 0.07	g : 0.07	! : 0.07	[ : 0.05	a : 0.05	d : 0.05	: : 0.01	& : 0.01	$ : 0.01	# : 0.01	% : 0.01	i : 0.01	" : 0.01	
c : 0.23	e : 0.17	b : 0.13	[ : 0.09	g : 0.07	d : 0.05	! : 0.03	f : 0.03	" : 0.01	a : 0.01	: : 0.01	$ : 0.01	# : 0.01	% : 0.01	i : 0.01	
c : 0.19	e : 0.19	b : 0.15	g : 0.09	d : 0.07	[ : 0.05	i : 0.03	! : 0.03	f : 0.03	# : 0.03	" : 0.01	] : 0.01	% : 0.01	
e : 0.23	[ : 0.15	c : 0.11	g : 0.07	b : 0.07	# : 0.07	" : 0.05	! : 0.03	f : 0.03	i : 0.03	d : 0.03	a : 0.01	% : 0.01	
g : 0.19	e : 0.15	[ : 0.15	! : 0.11	d : 0.11	# : 0.07	f : 0.03	c : 0.03	i : 0.03	" : 0.03	a : 0.01	
g : 0.17	! : 0.15	e : 0.13	d : 0.13	f : 0.11	c : 0.07	# : 0.05	i : 0.03	" : 0.03	b : 0.03	[ : 0.01	
e : 0.25	g : 0.17	f : 0.11	c : 0.09	d : 0.09	[ : 0.07	! : 0.05	b : 0.03	# : 0.03	i : 0.01	a : 0.01	
d : 0.23	e : 0.21	g : 0.15	f : 0.11	[ : 0.11	c : 0.07	! : 0.01	i : 0.01	a : 0.01	b : 0.01	
e : 0.17	c : 0.17	g : 0.15	d : 0.15	f : 0.11	[ : 0.11	! : 0.05	i : 0.01	b : 0.01	
e : 0.17	b : 0.17	c : 0.15	g : 0.13	d : 0.13	f : 0.09	[ : 0.05	! : 0.03	i : 0.01	
b : 0.17	e : 0.15	c : 0.15	d : 0.13	g : 0.11	a : 0.11	f : 0.09	i : 0.01	o : 0.01	
n : 0.96	o : 0.03	
n : 0.96	o : 0.03	
n : 0.96	o : 0.03	
n : 0.96	o : 0.03	
n : 0.96	o : 0.03	
b : 0.17	e : 0.15	c : 0.15	d : 0.13	g : 0.11	a : 0.11	f : 0.09	i : 0.01	o : 0.01	
b : 0.17	e : 0.15	c : 0.15	g : 0.13	d : 0.13	f : 0.09	] : 0.07	2 : 0.03	i : 0.01	
c : 0.19	e : 0.17	g : 0.15	d : 0.15	f : 0.11	2 : 0.09	] : 0.05	i : 0.01	a : 0.01	
e : 0.21	d : 0.19	g : 0.17	f : 0.11	c : 0.07	] : 0.07	2 : 0.05	b : 0.03	4 : 0.01	i : 0.01	
e : 0.23	g : 0.17	d : 0.15	f : 0.11	c : 0.07	b : 0.05	4 : 0.03	] : 0.03	2 : 0.03	i : 0.01	a : 0.01	3 : 0.01	
g : 0.17	2 : 0.15	d : 0.15	f : 0.11	e : 0.11	] : 0.09	4 : 0.05	c : 0.03	3 : 0.03	i : 0.01	b : 0.01	
g : 0.17	e : 0.17	2 : 0.15	d : 0.13	3 : 0.09	c : 0.07	4 : 0.05	] : 0.03	f : 0.01	i : 0.01	b : 0.01	a : 0.01	
e : 0.21	c : 0.11	d : 0.11	3 : 0.09	b : 0.09	] : 0.05	g : 0.05	2 : 0.03	f : 0.03	i : 0.03	4 : 0.03	l : 0.01	a : 0.01	6 : 0.01	= : 0.01	
c : 0.19	e : 0.17	b : 0.13	] : 0.11	3 : 0.07	g : 0.05	i : 0.03	d : 0.03	6 : 0.03	2 : 0.03	f : 0.01	l : 0.01	4 : 0.01	= : 0.01	
c : 0.19	e : 0.19	b : 0.11	2 : 0.07	] : 0.07	g : 0.05	a : 0.03	3 : 0.03	d : 0.03	6 : 0.03	f : 0.01	l : 0.01	: : 0.01	7 : 0.01	= : 0.01	i : 0.01	

#score	619.6505824591792
#seq	51
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456SOS_UTP18_CDS_m3_run2.txt

#BEAR
!!eeeeehhhhhhhhvvvvvvvvvvvvvhhhhhhhh5555	chr9:100777604-100777861(+)$1	257	165	205	39.9348
eeeeeeeeee!!ddddtttttttttttddddeeeee333e	chr11:5275486-5275725(-)$1	239	63	103	37.2639

#otherMatches

#Seq PSSM
AUUUUGUAGCUGUUUAAAAAAAAAAAAAAGGUAGCUGUGA	chr9:100777604-100777861(+)$1	257	165	205	39.9348
CCCAAAGUCAAGGCACAUGGCAAGAAGGUGCUGACUUCCU	chr11:5275486-5275725(-)$1	239	63	103	37.2639

#DB
..(((((((((((((.............))))))))....	chr9:100777604-100777861(+)$1	1	165	205	39.9348
((((((((((..((((...........)))))))))...)	chr11:5275486-5275725(-)$1	1	63	103	37.2639

#PSSM
! : 0.50	e : 0.50	
! : 0.50	e : 0.50	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
h : 0.50	e : 0.50	
h : 0.50	e : 0.50	
h : 0.50	e : 0.50	
h : 0.50	! : 0.50	
h : 0.50	! : 0.50	
h : 0.50	d : 0.50	
h : 0.50	d : 0.50	
h : 0.50	d : 0.50	
v : 0.50	d : 0.50	
v : 0.50	t : 0.50	
v : 0.50	t : 0.50	
v : 0.50	t : 0.50	
v : 0.50	t : 0.50	
v : 0.50	t : 0.50	
v : 0.50	t : 0.50	
v : 0.50	t : 0.50	
v : 0.50	t : 0.50	
v : 0.50	t : 0.50	
v : 0.50	t : 0.50	
v : 0.50	t : 0.50	
v : 0.50	d : 0.50	
h : 0.50	d : 0.50	
h : 0.50	d : 0.50	
h : 0.50	d : 0.50	
h : 0.50	e : 0.50	
h : 0.50	e : 0.50	
h : 0.50	e : 0.50	
h : 0.50	e : 0.50	
h : 0.50	e : 0.50	
5 : 0.50	3 : 0.50	
5 : 0.50	3 : 0.50	
5 : 0.50	3 : 0.50	
5 : 0.50	e : 0.50	

#score	77.19885269725
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_UTR_m2_run1.txt

#BEAR
ffffyyyyyyyyyyyyyyyyffffff	chr12:96354256-96354500(+)$1	244	152	178	22.0865
c!!ddddvvvvvvvvvvvvvdddd22	chr17:38185975-38186212(-)$1	237	192	218	21.6234
!!eeeeeuuuuuuuuuuuueeeee22	chr19:1434637-1434922(+)$1	285	232	258	23.1875
gggggggtttttttttttggggggg]	chr3:49721357-49721607(-)$1	250	197	223	23.4478
bb!!ccctttttttttttccc22bb]	chr5:73923328-73923588(-)$1	260	57	83	22.2224
gggggbbtttttttttttbb]ggggg	chr1:156352514-156352760(+)$1	246	201	227	23.9633
eeeeyyyyyyyyyyyyyyyyeeeee2	chr12:69667804-69668112(+)$1	308	92	118	22.0034
gggg[bbtttttttttttbb]ggggg	chr16:31202321-31202531(+)$1	210	151	177	24.0231
gggggbbtttttttttttbb]ggggg	chr1:155232659-155232943(-)$1	284	20	46	23.9633
ddddccctttttttttttccc]dddd	chr19:4325292-4325619(-)$1	327	285	311	22.3417
ffffffwwwwwwwwwwwwwwffffff	chr16:31501629-31501886(-)$1	257	193	219	21.9978
!ccc[bbtttttttttttbb]ccc33	chr15:34817427-34817772(-)$1	345	186	212	23.6657
:ffffffuuuuuuuuuuuuffffff:	chr2:95752928-95753229(-)$1	301	110	136	21.5831
ccc!!bbtttttttttttbb22cccI	chr3:48555553-48555820(-)$1	267	27	53	21.6726
eeeeewwwwwwwwwwwwwweeeeeFF	chr1:1247121-1247390(-)$1	269	26	52	20.9395
""cccvvvvvvvvvvvvvcccfffff	chr17:38187310-38187575(-)$1	265	202	228	22.2267
!ccccccssssssssssccc]cccdd	chrX:48932317-48932579(-)$1	262	178	204	15.9644
gggggggtttttttttttggggggga	chr9:117029702-117029937(+)$1	235	86	112	23.3010
[a[a[bbuuuuuuuuuuuubbaa]dd	chr3:49052862-49053154(+)$1	292	12	38	23.1194
gggggggvvvvvvvvvvvvvgggggg	chr2:85772037-85772285(+)$1	248	88	114	23.1379
h!!ddddwwwwwwwwwwwwwwdddd2	chr2:27591143-27591418(-)$1	275	211	237	20.6850
eeee[bbtttttttttttbbeeeee2	chr2:220370337-220370584(+)$1	247	140	166	23.3098
ggggggwwwwwwwwwwwwwwgggggg	chr20:62374250-62374506(+)$1	256	153	179	22.6627
$$$$ccctttttttttttccc22ccc	chr1:203819618-203819909(+)$1	291	79	105	22.1101
fffffwwwwwwwwwwwwwwffffff]	chr3:52558359-52558632(-)$1	273	23	49	21.9727
ccc[cccuuuuuuuuuuuucccccc]	chr6:35263418-35263685(+)$1	267	127	153	23.9543
a!!bbbbtttttttttttbb]bb22a	chr5:176951270-176951535(-)$1	265	165	191	21.9321
eeeeeyyyyyyyyyyyyyyyyeeeee	chr9:117027141-117027346(+)$1	205	23	49	21.8517
c!!dddduuuuuuuuuuuuddddccc	chrX:19377575-19377893(+)$1	318	136	162	22.6205
ha[ddddtttttttttttdddd]a]h	chr16:31201261-31201491(+)$1	230	142	168	21.6013
eeeeexxxxxxxxxxxxxxxeeeee]	chr19:55602661-55602922(-)$1	261	59	85	17.9071
!!eeeeewwwwwwwwwwwwwweeeee	chr3:58139142-58139448(+)$1	306	125	151	21.5964
ffffbbuuuuuuuuuuuubb]fffff	chr20:39988799-39989063(+)$1	264	125	151	22.9490
[ffffffuuuuuuuuuuuuffffff3	chr9:117027614-117027839(+)$1	225	103	129	23.6055
bbeeeeettttttttttteeeee]bb	chr21:47556828-47557051(-)$1	223	184	210	21.4054
eee[bbuuuuuuuuuuuubb]eeeee	chr20:61920925-61921174(+)$1	249	169	195	22.9137
ffff[bbvvvvvvvvvvvvvbbffff	chr2:220074579-220074864(-)$1	285	222	248	22.2837
eee[ccctttttttttttccc]eeee	chr10:45484619-45484884(+)$1	265	48	74	23.5180
gggggggtttttttttttgggggggE	chr20:57274158-57274411(+)$1	253	125	151	22.3518
[ffffffvvvvvvvvvvvvvffffff	chr6:31730116-31730400(+)$1	284	58	84	22.6629
fffffwwwwwwwwwwwwwwffffff]	chr20:61920581-61920875(+)$1	294	79	105	21.9727
:fffffftttttttttttffffffdd	chr9:117071553-117071775(+)$1	222	117	143	21.5972
c[eeeeeuuuuuuuuuuuueeeeecc	chr6:33161374-33161689(-)$1	315	225	251	23.1922
!!a[cccvvvvvvvvvvvvvccc]a2	chr19:48984086-48984359(+)$1	273	229	255	23.0519
eeeeeyyyyyyyyyyyyyyyyeeeee	chr11:65314888-65315129(-)$1	241	48	74	21.8517
cc[a[bbuuuuuuuuuuuubba]ccc	chr3:48674796-48675079(-)$1	283	249	275	23.3794
hhh[ccctttttttttttccc]hhhh	chr16:84212965-84213215(-)$1	250	138	164	22.6024
Acccwwwwwwwwwwwwwwccc:ccc#	chr7:100277851-100278098(-)$1	247	28	54	18.6390
ggggggwwwwwwwwwwwwwwgggggg	chr2:70438530-70438784(-)$1	254	179	205	22.6627
ggggyyyyyyyyyyyyyyyygggggg	chr15:34819247-34819491(-)$1	244	8	34	22.6607
!!bbccctttttttttttccc]bb66	chr14:23528244-23528496(-)$1	252	189	215	21.7300

#otherMatches

#Seq PSSM
UGACUUUUAGUUUUUCCCUCGUCAAC	chr12:96354256-96354500(+)$1	244	152	178	22.0865
CUGUCACAAACAUCCUCAAGGUGAGU	chr17:38185975-38186212(-)$1	237	192	218	21.6234
CAGAACCACAACGUGCAAGGGUUCCA	chr19:1434637-1434922(+)$1	285	232	258	23.1875
CAUAAAGCCAUGUUUCCUCUUUAUGC	chr3:49721357-49721607(-)$1	250	197	223	23.4478
UUGCUGUAGAAACACAUAACAAAGGG	chr5:73923328-73923588(-)$1	260	57	83	22.2224
UGAauucauucacucauagauauuua	chr1:156352514-156352760(+)$1	246	201	227	23.9633
UUUUUUUUUUUGCUGUCCAUGAGAAU	chr12:69667804-69668112(+)$1	308	92	118	22.0034
AGAGGCCAUAGGAUAACAGGGUUUUG	chr16:31202321-31202531(+)$1	210	151	177	24.0231
GCCAGAGUUCACUCCUUCCUCCUGGC	chr1:155232659-155232943(-)$1	284	20	46	23.9633
UGUGACACGUUACACUUUUGUCCACG	chr19:4325292-4325619(-)$1	327	285	311	22.3417
CUGCUCAUUCCACAAAACCAGAGCAG	chr16:31501629-31501886(-)$1	257	193	219	21.9978
ACAGAAUGUGUAACAGAAAUACUGAA	chr15:34817427-34817772(-)$1	345	186	212	23.6657
AAGAGAGCCGCCACGUAACCUCUCUG	chr2:95752928-95753229(-)$1	301	110	136	21.5831
GGGUAGCACAUCUUUCCAGCCUCCCA	chr3:48555553-48555820(-)$1	267	27	53	21.6726
ACAGGUAUCAACAUUCCUCCCUGUCC	chr1:1247121-1247390(-)$1	269	26	52	20.9395
UGACCUCUCUCUUGUUACGGUGGGGC	chr17:38187310-38187575(-)$1	265	202	228	22.2267
GUGGGGCGUGCUUGGAAGCCACCAGC	chrX:48932317-48932579(-)$1	262	178	204	15.9644
GCCUGGUGCAGUGGGAGAACCGGGCC	chr9:117029702-117029937(+)$1	235	86	112	23.3010
GGAGUGCUGCCAAGAAUAUGCCCGAC	chr3:49052862-49053154(+)$1	292	12	38	23.1194
CCAAGGUGUCCUACAGAAAAACCUUG	chr2:85772037-85772285(+)$1	248	88	114	23.1379
AGUCUGAGGAGUUUUAGUAAGUCAGU	chr2:27591143-27591418(-)$1	275	211	237	20.6850
GCUGUGGUGAGCACUGGUCCCAGCCC	chr2:220370337-220370584(+)$1	247	140	166	23.3098
GGGCUGAAACAGCCCGAGGACAGCCC	chr20:62374250-62374506(+)$1	256	153	179	22.6627
AUUGGCCCCAAAACGUAAGGCAGUGG	chr1:203819618-203819909(+)$1	291	79	105	22.1101
CGUGGACUUCACCUUCUACCCACGCC	chr3:52558359-52558632(-)$1	273	23	49	21.9727
CUGUGGCUGAAGAAAAGGUGCCCAGC	chr6:35263418-35263685(+)$1	267	127	153	23.9543
CAGUCCCAAAACUGAGAAGGAGAAGG	chr5:176951270-176951535(-)$1	265	165	191	21.9321
AGCACCCUCUCCCACCUUCACGUGCU	chr9:117027141-117027346(+)$1	205	23	49	21.8517
GACCCACCUUUUGAAGUUCGUGGUGC	chrX:19377575-19377893(+)$1	318	136	162	22.6205
UCGCCGGGCAGACUUUAAUCGGGGUG	chr16:31201261-31201491(+)$1	230	142	168	21.6013
GUCAUCAGCAAACUCUCCAAGUGACC	chr19:55602661-55602922(-)$1	261	59	85	17.9071
CAGCCCCUUCCAGUUCACCGUGGGGC	chr3:58139142-58139448(+)$1	306	125	151	21.5964
AGCCCCUUUCCUCCAGCUGGUGGCUC	chr20:39988799-39989063(+)$1	264	125	151	22.9490
CAGGCCCCCCAGGCACCAAGGGCCUC	chr9:117027614-117027839(+)$1	225	103	129	23.6055
CUCCCUCGCCCAUCCCCAGAGGGCAG	chr21:47556828-47557051(-)$1	223	184	210	21.4054
GAAGGCGCGGACCUGACAGCAUUCCA	chr20:61920925-61921174(+)$1	249	169	195	22.9137
CCCUCUCAAAGACUAACCCAGAAGGG	chr2:220074579-220074864(-)$1	285	222	248	22.2837
CAGUCCCUUGUCCCCUCUGGGCCUGA	chr10:45484619-45484884(+)$1	265	48	74	23.5180
UCAUCCCAACCAUCAUCCGGGAUGAG	chr20:57274158-57274411(+)$1	253	125	151	22.3518
UGCGAUUUUCUCUCUUCUUCAGUUGC	chr6:31730116-31730400(+)$1	284	58	84	22.6629
GGGGGUCUUUGAGUGUCUUUCUCCAA	chr20:61920581-61920875(+)$1	294	79	105	21.9727
GCAGGCCGUACGCUUCCGGGCCUGGA	chr9:117071553-117071775(+)$1	222	117	143	21.5972
CUGGGGCUGCAUGAUUUUUGCCCUGC	chr6:33161374-33161689(-)$1	315	225	251	23.1922
gacguguuuggauugagguugcagga	chr19:48984086-48984359(+)$1	273	229	255	23.0519
GCCGCCUCCUACACCCCCUUCGUGGC	chr11:65314888-65315129(-)$1	241	48	74	21.8517
UCUGUGGUGCCAUUUGAUUCCCUGAC	chr3:48674796-48675079(-)$1	283	249	275	23.3794
CAGAGAGACCUGGGCUCCCUCCCUGC	chr16:84212965-84213215(-)$1	250	138	164	22.6024
CACCCACUUCUUAUUCCCGGUCCCCU	chr7:100277851-100278098(-)$1	247	28	54	18.6390
UGGGCAAAGCAUCUUUUAAAUGUUCA	chr2:70438530-70438784(-)$1	254	179	205	22.6627
UGCUUUUUUAAUGUUAUUGCAGCAUG	chr15:34819247-34819491(-)$1	244	8	34	22.6607
UAUGGCCACAGAGGGAUAGGCACAGU	chr14:23528244-23528496(-)$1	252	189	215	21.7300

#DB
((((................))))))	chr12:96354256-96354500(+)$1	1	152	178	22.0865
(..((((.............))))..	chr17:38185975-38186212(-)$1	1	192	218	21.6234
..(((((............)))))..	chr19:1434637-1434922(+)$1	1	232	258	23.1875
(((((((...........))))))).	chr3:49721357-49721607(-)$1	1	197	223	23.4478
((..(((...........)))..)).	chr5:73923328-73923588(-)$1	1	57	83	22.2224
(((((((...........)).)))))	chr1:156352514-156352760(+)$1	1	201	227	23.9633
((((................))))).	chr12:69667804-69668112(+)$1	1	92	118	22.0034
((((.((...........)).)))))	chr16:31202321-31202531(+)$1	1	151	177	24.0231
(((((((...........)).)))))	chr1:155232659-155232943(-)$1	1	20	46	23.9633
(((((((...........))).))))	chr19:4325292-4325619(-)$1	1	285	311	22.3417
((((((..............))))))	chr16:31501629-31501886(-)$1	1	193	219	21.9978
.(((.((...........)).)))..	chr15:34817427-34817772(-)$1	1	186	212	23.6657
.((((((............)))))).	chr2:95752928-95753229(-)$1	1	110	136	21.5831
(((..((...........))..))))	chr3:48555553-48555820(-)$1	1	27	53	21.6726
(((((..............)))))((	chr1:1247121-1247390(-)$1	1	26	52	20.9395
..(((.............))))))))	chr17:38187310-38187575(-)$1	1	202	228	22.2267
.((((((..........))).)))))	chrX:48932317-48932579(-)$1	1	178	204	15.9644
(((((((...........)))))))(	chr9:117029702-117029937(+)$1	1	86	112	23.3010
.(.(.((............)))).))	chr3:49052862-49053154(+)$1	1	12	38	23.1194
(((((((.............))))))	chr2:85772037-85772285(+)$1	1	88	114	23.1379
(..((((..............)))).	chr2:27591143-27591418(-)$1	1	211	237	20.6850
((((.((...........))))))).	chr2:220370337-220370584(+)$1	1	140	166	23.3098
((((((..............))))))	chr20:62374250-62374506(+)$1	1	153	179	22.6627
....(((...........)))..)))	chr1:203819618-203819909(+)$1	1	79	105	22.1101
(((((..............)))))).	chr3:52558359-52558632(-)$1	1	23	49	21.9727
(((.(((............)))))).	chr6:35263418-35263685(+)$1	1	127	153	23.9543
(..((((...........)).))..)	chr5:176951270-176951535(-)$1	1	165	191	21.9321
(((((................)))))	chr9:117027141-117027346(+)$1	1	23	49	21.8517
(..((((............)))))))	chrX:19377575-19377893(+)$1	1	136	162	22.6205
((.((((...........)))).).)	chr16:31201261-31201491(+)$1	1	142	168	21.6013
(((((...............))))).	chr19:55602661-55602922(-)$1	1	59	85	17.9071
..(((((..............)))))	chr3:58139142-58139448(+)$1	1	125	151	21.5964
((((((............)).)))))	chr20:39988799-39989063(+)$1	1	125	151	22.9490
.((((((............)))))).	chr9:117027614-117027839(+)$1	1	103	129	23.6055
(((((((...........))))).))	chr21:47556828-47557051(-)$1	1	184	210	21.4054
(((.((............)).)))))	chr20:61920925-61921174(+)$1	1	169	195	22.9137
((((.((.............))))))	chr2:220074579-220074864(-)$1	1	222	248	22.2837
(((.(((...........))).))))	chr10:45484619-45484884(+)$1	1	48	74	23.5180
(((((((...........))))))))	chr20:57274158-57274411(+)$1	1	125	151	22.3518
.((((((.............))))))	chr6:31730116-31730400(+)$1	1	58	84	22.6629
(((((..............)))))).	chr20:61920581-61920875(+)$1	1	79	105	21.9727
.((((((...........))))))((	chr9:117071553-117071775(+)$1	1	117	143	21.5972
(.(((((............)))))))	chr6:33161374-33161689(-)$1	1	225	251	23.1922
..(.(((.............))).).	chr19:48984086-48984359(+)$1	1	229	255	23.0519
(((((................)))))	chr11:65314888-65315129(-)$1	1	48	74	21.8517
((.(.((............))).)))	chr3:48674796-48675079(-)$1	1	249	275	23.3794
(((.(((...........))).))))	chr16:84212965-84213215(-)$1	1	138	164	22.6024
((((..............))).(((.	chr7:100277851-100278098(-)$1	1	28	54	18.6390
((((((..............))))))	chr2:70438530-70438784(-)$1	1	179	205	22.6627
((((................))))))	chr15:34819247-34819491(-)$1	1	8	34	22.6607
..(((((...........))).))..	chr14:23528244-23528496(-)$1	1	189	215	21.7300

#PSSM
g : 0.19	e : 0.15	f : 0.11	c : 0.11	! : 0.11	[ : 0.05	h : 0.05	b : 0.03	: : 0.03	d : 0.01	" : 0.01	$ : 0.01	a : 0.01	A : 0.01	
f : 0.19	g : 0.19	! : 0.15	e : 0.15	c : 0.11	b : 0.03	a : 0.03	d : 0.01	" : 0.01	$ : 0.01	[ : 0.01	h : 0.01	
e : 0.23	f : 0.19	g : 0.19	c : 0.11	! : 0.09	[ : 0.05	d : 0.01	$ : 0.01	a : 0.01	h : 0.01	b : 0.01	
f : 0.19	e : 0.19	g : 0.19	d : 0.09	[ : 0.09	c : 0.07	! : 0.03	a : 0.03	b : 0.03	$ : 0.01	
c : 0.19	e : 0.15	g : 0.15	f : 0.13	[ : 0.11	d : 0.07	y : 0.05	b : 0.05	! : 0.01	w : 0.01	
b : 0.23	c : 0.17	g : 0.11	y : 0.09	f : 0.09	d : 0.07	e : 0.07	w : 0.07	v : 0.01	x : 0.01	
b : 0.19	c : 0.17	w : 0.13	y : 0.09	d : 0.07	e : 0.07	g : 0.07	f : 0.07	u : 0.03	v : 0.01	x : 0.01	
t : 0.37	u : 0.19	w : 0.17	v : 0.11	y : 0.09	s : 0.01	x : 0.01	
t : 0.37	u : 0.19	w : 0.17	v : 0.11	y : 0.09	s : 0.01	x : 0.01	
t : 0.37	u : 0.19	w : 0.17	v : 0.11	y : 0.09	s : 0.01	x : 0.01	
t : 0.37	u : 0.19	w : 0.17	v : 0.11	y : 0.09	s : 0.01	x : 0.01	
t : 0.37	u : 0.19	w : 0.17	v : 0.11	y : 0.09	s : 0.01	x : 0.01	
t : 0.37	u : 0.19	w : 0.17	v : 0.11	y : 0.09	s : 0.01	x : 0.01	
t : 0.37	u : 0.19	w : 0.17	v : 0.11	y : 0.09	s : 0.01	x : 0.01	
t : 0.37	u : 0.19	w : 0.17	v : 0.11	y : 0.09	s : 0.01	x : 0.01	
t : 0.37	u : 0.19	w : 0.17	v : 0.11	y : 0.09	s : 0.01	x : 0.01	
t : 0.37	u : 0.19	w : 0.17	v : 0.11	y : 0.09	s : 0.01	x : 0.01	
t : 0.37	u : 0.19	w : 0.17	v : 0.11	y : 0.09	c : 0.01	x : 0.01	
c : 0.17	b : 0.17	u : 0.15	w : 0.15	y : 0.09	v : 0.09	g : 0.05	d : 0.01	x : 0.01	e : 0.01	f : 0.01	
b : 0.21	c : 0.19	y : 0.09	v : 0.09	w : 0.09	f : 0.09	e : 0.07	g : 0.05	d : 0.03	x : 0.01	
c : 0.19	f : 0.15	] : 0.15	e : 0.13	g : 0.13	d : 0.05	b : 0.05	w : 0.03	y : 0.03	2 : 0.01	
e : 0.21	f : 0.19	g : 0.19	d : 0.07	] : 0.07	c : 0.07	2 : 0.05	a : 0.03	b : 0.03	: : 0.01	
e : 0.23	f : 0.21	g : 0.19	c : 0.11	d : 0.07	2 : 0.03	b : 0.03	] : 0.03	a : 0.01	h : 0.01	
f : 0.21	e : 0.21	g : 0.19	c : 0.15	d : 0.05	] : 0.05	b : 0.03	2 : 0.01	a : 0.01	h : 0.01	
f : 0.19	g : 0.19	e : 0.15	c : 0.13	d : 0.09	2 : 0.05	b : 0.03	3 : 0.01	F : 0.01	] : 0.01	a : 0.01	h : 0.01	6 : 0.01	
g : 0.13	f : 0.11	2 : 0.11	] : 0.11	e : 0.09	d : 0.07	c : 0.07	3 : 0.03	a : 0.03	h : 0.03	: : 0.01	I : 0.01	F : 0.01	b : 0.01	E : 0.01	# : 0.01	6 : 0.01	

#score	1133.7066195841257
#seq	51
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485KCC_PRPF4_UTR_m1_run1.txt

#BEAR
gggggg!!a[dddd!!cccnnnnnccc]dddd]a22gggg	chr11:85955875-85956185(+)$1	310	238	278	17.3905
cc[eeeee####gggggggnnnnngggggggeeeee]ccc	chr11:126146197-126146453(+)$1	256	56	96	13.2282
[dddd!!iiiiiiiii[bboooooobb]iiiiiiiii]dd	chr11:46721829-46722202(-)$1	373	232	272	15.0448
fffff[ffffff[ccccccnnnnnccc333ccc]ffffff	chr17:55333886-55334153(+)$1	267	52	92	14.9796
:ggggggg!!a!!bb[cccnnnnnccc]bb]a22gggggg	chrX:48660373-48660665(+)$1	292	85	125	17.2099
ffffccc!!ccc####cccmmmmccc333ccc]ccc22ff	chr3:49050209-49050494(+)$1	285	87	127	14.9982
fff[ccc[bb[a"""cccooooooccc]a]bb22ccc]ff	chr17:61904810-61905120(+)$1	310	153	193	16.4871
bb"""bb!!ccc!!a!!cccmmmmccc]a22ccc22bb33	chr7:94285251-94285597(-)$1	346	140	180	14.3664
e[==========$$$$$ccclllccc4444==========	chr19:3958538-3958787(-)$1	249	171	211	18.8073
ggggggccc[ccc[cccccclllccc22ccc]cccccc]g	chr2:54197795-54198051(-)$1	256	161	201	15.1355
eeeeccc"""ccc[bb[cccmmmmccc]bbccc22ccc33	chr3:49051302-49051555(+)$1	253	194	234	14.0573
iiiiiiiiccc$$$$$cccnnnnnccc22ccc]iiiiiii	chr14:21945278-21945558(+)$1	280	72	112	19.2332
=======[a!!eeeee[cccmmmmccc22eeeee]a====	chr17:56167312-56167563(+)$1	251	150	190	15.7762
a####bb[a!!bb!!cccooooooccc22bb22a]bb22a	chr17:55333764-55333998(+)$1	234	110	150	15.8941
iiiiiii!!a"""ccc!!aooooooa22ccc4444a22ii	chr17:45918344-45918699(-)$1	355	64	104	17.2944
e"""iiiiiiiii"""bboooooobbiiiiiiiii]eeee	chr17:4850580-4850870(-)$1	290	148	188	16.2303
!a[ffffffdddd!!cccooooooccc22dddd4444fff	chr20:33507145-33507374(+)$1	229	164	204	15.0647
cc!!ggggggg!!bb[ddddllldddd]bb22gggggggc	chr8:27467983-27468203(-)$1	220	13	53	13.5839
============="""cccnnnnnccc4444=========	chr7:98993974-98994241(-)$1	267	69	109	21.9400
hhh]aiiiiiiiii[cccooooooccc]iiiiiiiii:dd	chr3:197024603-197024926(-)$1	323	175	215	16.4609
:ggggggg[dddd!!cccooooooccc]dddd]ggggggg	chr3:138553460-138553729(-)$1	269	136	176	16.2263
g[ggggggg[a[bb[cccooooooccc]bb]a22gggggg	chr19:18547548-18547816(-)$1	268	83	123	17.6993
iiiiii!!eeeee"""cccnnnnnccceeeee]iiiiiii	chr7:91874741-91875033(-)$1	292	8	48	18.1059
""===========[bbqqqqqqqqbb]===========33	chr11:61196975-61197287(-)$1	312	124	164	13.8450
bb"""ggggggg"""ddddnnnnndddd4444gggggggb	chrX:46771757-46772018(+)$1	261	86	126	15.4786
ggggdddd!!ffffffcccnnnnnccc22ffffff]dddd	chr3:47459894-47460210(-)$1	316	188	228	13.9614
ggg!!bb[a####ffffffooooooffffff4444abb]g	chr17:45772668-45772924(+)$1	256	7	47	13.8449
============!!a[a[annnnna]a]a22=========	chr21:34143616-34144089(-)$1	473	208	248	20.1596
g[a!!==========!!cccmmmmccc]==========]a	chr1:178994932-178995278(+)$1	346	205	245	18.4000
hhhh[cccdddd!!a[cccnnnnnccc]a333dddd]ccc	chr13:50571176-50571517(+)$1	341	262	302	15.9998
====!!a[a!!bb[dddd[aooooooa]dddd]bb22a]a	chr12:53574414-53574714(+)$1	300	13	53	14.3135
iiiiiii"""bb!!bb[annnnna]bb22bb22iiiiiii	chr22:18573513-18573810(+)$1	297	78	118	16.7025
iiiiiiiii!!bb[bb[cccmmmmccc]bb]bb333iiii	chr7:44252172-44252505(+)$1	333	97	137	16.7098
=======!!ccc"""ddddllldddd333ccc333=====	chr12:1100714-1100979(+)$1	265	47	87	17.7145
c[bb####ffffff[cccoooooocccffffff4444bb]	chr18:3262306-3262573(+)$1	267	170	210	14.2603
e[iiiiiiiii####cccssssssssssccciiiiiiiii	chr2:264072-264317(-)$1	245	191	231	13.7144
#bb[===========bb[ammmma]bb]===========]	chr19:49622555-49622838(+)$1	283	106	146	16.1008
CC==========[ffffffnnnnnffffff333=======	chr3:129612251-129612505(-)$1	254	211	251	14.8534
========bb[ccc[aooooooa]ccc]bb]=========	chr17:36955815-36956158(-)$1	343	150	190	17.2254
====="""dddd####cccnnnnnccc333dddd333===	chr8:28748177-28748542(+)$1	365	71	111	19.5054
ggggggg[ffffff[a[bboooooobb]a]ffffff]ggg	chr1:15850780-15851069(-)$1	289	63	103	14.3933
iiiiiii"""bb[a[ddddnnnnndddd]a]bb333iiii	chr18:76829256-76829621(+)$1	365	131	171	16.6759
iccc!!ccc[bb####cccnnnnnccc333bb]ccc22cc	chr19:50168136-50168490(-)$1	354	93	133	17.5841
ggggg!!eeeeeddddcccnnnnnccc]dddd4444eeee	chr12:132402866-132403155(+)$1	289	234	274	15.0157
f[bb[cccaeeeee"""ccclllccc333eeeee]a]ccc	chr6:33257347-33257643(+)$1	296	90	130	14.0836
a[===========[bbcccnnnnnccc]bb==========	chr16:448828-449115(+)$1	287	116	156	20.8566
:eeeee==========cccnnnnnccc]==========]e	chr19:49464848-49465090(+)$1	242	166	206	18.2511
===========[a[bb[aqqqqqqqqa]bb]a========	chr7:91874850-91875103(-)$1	253	61	101	15.0885
Ceeeee!!ggggggg[cccnnnnnccc]ggggggg22eee	chr22:37905015-37905275(-)$1	260	58	98	14.9431
[=============[cccooooooccc22===========	chr8:41348128-41348486(+)$1	358	8	48	21.1755
=========!!bb!!cccooooooccc]bb]=========	chr1:245026251-245026553(-)$1	302	191	231	20.8644

#otherMatches

#Seq PSSM
CGCCUCGGCGGCUGGGCGCGAUUUgcgacagugggggggg	chr11:85955875-85956185(+)$1	310	238	278	17.3905
GUUUCUGCAGUUCGUAACCGCACUGGUUGUGGCAGGUAUG	chr11:126146197-126146453(+)$1	256	56	96	13.2282
CUGGGCUCAGAGGCCUGGCCUUCCUGCAGGGUUUCUGCCC	chr11:46721829-46722202(-)$1	373	232	272	15.0448
UGCCCCGGCUCCGCCGCUCGCAGAGAGAUUCGGAGGAGCC	chr17:55333886-55334153(+)$1	267	52	92	14.9796
GCAGGGGGUGGAGCUGGUUGAAGGAACGGGGCAGUCCCCU	chrX:48660373-48660665(+)$1	292	85	125	17.2099
GCCCUGCGUGGUUAUGAGGAGCUCCUGUUGCUGGCAUCGG	chr3:49050209-49050494(+)$1	285	87	127	14.9982
GUCGGGUGGGUCGGAGGUGCCUGGACCAGUCCAUGCUGGA	chr17:61904810-61905120(+)$1	310	153	193	16.4871
GGGAGGGGAGGGGAGAAUCGAGGACGGACGGCCUAGCCAG	chr7:94285251-94285597(-)$1	346	140	180	14.3664
GGCUUGGUGGGGUCUUCCACUGUGUGCCCUUCUCGCCGAG	chr19:3958538-3958787(-)$1	249	171	211	18.8073
Agcccccggagccgggcgggcgucccgagccgggcccgcg	chr2:54197795-54198051(-)$1	256	161	201	15.1355
UGGGACCGGCAACGCAAUCGGCAUCGGAUGGUUAAGGUAG	chr3:49051302-49051555(+)$1	253	194	234	14.0573
GUCCUUGCGGAAGUGACGGCAGUUCCGAGUCCAGUGGGGG	chr14:21945278-21945558(+)$1	280	72	112	19.2332
UUCUCUUAGAGCAGCCCCUGUUGUUAGUUGGCUGGCAAGG	chr17:56167312-56167563(+)$1	251	150	190	15.7762
CGGGGGGGUGUGCGAGGCAGCGGGGCUGAGCUAAGCCGAG	chr17:55333764-55333998(+)$1	234	110	150	15.8941
CCCUGGCCAGAAGCGGAGGAGGUGGCACCCGGGACCGAGC	chr17:45918344-45918699(-)$1	355	64	104	17.2944
GUACCUAGACCCGAGAGCUGGCCUGCCGGGUCUGGCCCCU	chr17:4850580-4850870(-)$1	290	148	188	16.2303
GAGUGGUGUGAUGCCGAGGACCCACUCUUCAUCCUGUACA	chr20:33507145-33507374(+)$1	229	164	204	15.0647
CUGCAGGCAGCAGGUGGGCGGGACGCCAGCAGGCUGUCUA	chr8:27467983-27468203(-)$1	220	13	53	13.5839
UCCUCUUCAUCUUGGCACAGAAAUUGUUUGGGGGAUGGGG	chr7:98993974-98994241(-)$1	267	69	109	21.9400
AGCGGGGCCGGGCUGGGGAGCUGCUCCGAGUCUGGCCGGG	chr3:197024603-197024926(-)$1	323	175	215	16.4609
GGCUGCUGACUGCGCACUUGGAAUAGUAGCAGGCGGCGGC	chr3:138553460-138553729(-)$1	269	136	176	16.2263
GAGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUCC	chr19:18547548-18547816(-)$1	268	83	123	17.6993
CUUUCUUUUGGCGACUGAGGGUUUUUCUGCCACAGGAAGC	chr7:91874741-91875033(-)$1	292	8	48	18.1059
GGCGGCUGGAGCUGCUUGACACCUGGGGGCUCUGGCCGGA	chr11:61196975-61197287(-)$1	312	124	164	13.8450
GCGUGGGAGCGCACAGUGUCAGGAAUACAAUAGUGCUCCG	chrX:46771757-46772018(+)$1	261	86	126	15.4786
UCCCGUGCAGGGUGGCGGCGCUGGGCCUGGCCACCGGCAU	chr3:47459894-47460210(-)$1	316	188	228	13.9614
GAGCCUGAGUCAUUCCUGCCCCCUCGUAGGGUUCCCCAUU	chr17:45772668-45772924(+)$1	256	7	47	13.8449
GCCGCCGCCGGGCACGGGCGAAGAGGCGGGCCCCGGUGGC	chr21:34143616-34144089(-)$1	473	208	248	20.1596
cguggggcugccccuccccggaggcggcgggggcggccgg	chr1:178994932-178995278(+)$1	346	205	245	18.4000
UGUCAUGGGCCUGGGGAGGAGCGGCCUGCGGAGGGCGCCG	chr13:50571176-50571517(+)$1	341	262	302	15.9998
AGUGGAUGCAGCCGCUCGGCGGAGAGGACGAGGGGGAGGG	chr12:53574414-53574714(+)$1	300	13	53	14.3135
CUGGGUGGAGGUGGGUGCAAGCAGGACAGAUAGUGCCUGG	chr22:18573513-18573810(+)$1	297	78	118	16.7025
CACUCCAGUGGGGGGUGGGGAGUCCCUGAUGCUAGGGCUG	chr7:44252172-44252505(+)$1	333	97	137	16.7098
CGGGAUCGGGCGGGAGCCGAGGCGGUAGAUGUGGGGAUCC	chr12:1100714-1100979(+)$1	265	47	87	17.7145
CGAUGGAGCCGGUAUGGGGAGACGCCCUGCUGGAGAAGUG	chr18:3262306-3262573(+)$1	267	170	210	14.2603
CACGGCGGGUGUUUUGCGCCGCCUCCUUCGUCACCUGCCG	chr2:264072-264317(-)$1	245	191	231	13.7144
GGUGGGAUUUGGGGGGCGCUGGUGGGCACCCCUGGAUCUG	chr19:49622555-49622838(+)$1	283	106	146	16.1008
CCCCCUCACGGCCCUCCGCGGUGGGUGGGGACAGUCGUGA	chr3:129612251-129612505(-)$1	254	211	251	14.8534
CGGGGAGGAGGGGCGGGCGGGGCGGCCGCUGCCUCCCCGG	chr17:36955815-36956158(-)$1	343	150	190	17.2254
UUCUCUUCACUUAAAACAAUUUUUUUGGAGGGGUUUUGGG	chr8:28748177-28748542(+)$1	365	71	111	19.5054
uggggcggguucuggggcggggcggugacgcggagcgugu	chr1:15850780-15851069(-)$1	289	63	103	14.3933
GGCGGGAAAGGGGCGGUCGGAACAUGGCGGACCAGAUCCC	chr18:76829256-76829621(+)$1	365	131	171	16.6759
CGAUGAUGUGGGGGAGGGAGGAGGUCUAUACUGGCGGAAU	chr19:50168136-50168490(-)$1	354	93	133	17.5841
GAGGCCCCAGCCCCUGAGCUCCCUGCUCCAGGACACGGCU	chr12:132402866-132403155(+)$1	289	234	274	15.0157
GCGUUUCGCCCACCAUCUCCUGGGGACAGGGUGGAGUCGA	chr6:33257347-33257643(+)$1	296	90	130	14.0836
UGAAAGGGUGAGGUGGCAGUGCCUCUGACCUCUUGCCUUU	chr16:448828-449115(+)$1	287	116	156	20.8566
AGAGUGGUCUUGAGGGGGUAAUAAACCUCCUUCGGGACAC	chr19:49464848-49465090(+)$1	242	166	206	18.2511
GGGAACCCUCAAGACGGCUUUCUUUUGGCGACUGAGGGUU	chr7:91874850-91875103(-)$1	253	61	101	15.0885
CCUGGCCAUUGUUCCACACAGGAAGUGGGGGAUGAGAGCC	chr22:37905015-37905275(-)$1	260	58	98	14.9431
GUUUGUGUUUCCCGGGCCGAACCGGGUUGUGGGGGGCGCG	chr8:41348128-41348486(+)$1	358	8	48	21.1755
ggggaggggagcgccgccgcgccgggcucggccccUCCCC	chr1:245026251-245026553(-)$1	302	191	231	20.8644

#DB
((((((..(.((((..(((.....))).)))).)..))))	chr11:85955875-85956185(+)$1	1	238	278	17.3905
((.(((((....(((((((.....)))))))))))).)))	chr11:126146197-126146453(+)$1	1	56	96	13.2282
.((((..(((((((((.((......)).))))))))).))	chr11:46721829-46722202(-)$1	1	232	272	15.0448
(((((.((((((.((((((.....)))...))).))))))	chr17:55333886-55334153(+)$1	1	52	92	14.9796
.(((((((..(..((.(((.....))).)).)..))))))	chrX:48660373-48660665(+)$1	1	85	125	17.2099
(((((((..(((....(((....)))...))).)))..))	chr3:49050209-49050494(+)$1	1	87	127	14.9982
(((.(((.((.(...(((......))).).))..))).))	chr17:61904810-61905120(+)$1	1	153	193	16.4871
((...((..(((..(..(((....))).)..)))..))..	chr7:94285251-94285597(-)$1	1	140	180	14.3664
(.((((((((((.....(((...)))....))))))))))	chr19:3958538-3958787(-)$1	1	171	211	18.8073
(((((((((.(((.((((((...)))..))).)))))).)	chr2:54197795-54198051(-)$1	1	161	201	15.1355
(((((((...(((.((.(((....))).)))))..)))..	chr3:49051302-49051555(+)$1	1	194	234	14.0573
(((((((((((.....(((.....)))..))).)))))))	chr14:21945278-21945558(+)$1	1	72	112	19.2332
(((((((.(..(((((.(((....)))..))))).)))))	chr17:56167312-56167563(+)$1	1	150	190	15.7762
(....((.(..((..(((......)))..))..).))..)	chr17:55333764-55333998(+)$1	1	110	150	15.8941
(((((((..(...(((..(......)..)))....)..))	chr17:45918344-45918699(-)$1	1	64	104	17.2944
(...(((((((((...((......))))))))))).))))	chr17:4850580-4850870(-)$1	1	148	188	16.2303
.(.((((((((((..(((......)))..))))....)))	chr20:33507145-33507374(+)$1	1	164	204	15.0647
((..(((((((..((.((((...)))).))..))))))))	chr8:27467983-27468203(-)$1	1	13	53	13.5839
(((((((((((((...(((.....)))....)))))))))	chr7:98993974-98994241(-)$1	1	69	109	21.9400
))).)(((((((((.(((......))).))))))))).((	chr3:197024603-197024926(-)$1	1	175	215	16.4609
.(((((((.((((..(((......))).)))).)))))))	chr3:138553460-138553729(-)$1	1	136	176	16.2263
(.(((((((.(.((.(((......))).)).)..))))))	chr19:18547548-18547816(-)$1	1	83	123	17.6993
((((((..(((((...(((.....)))))))).)))))))	chr7:91874741-91875033(-)$1	1	8	48	18.1059
..(((((((((((.((........)).)))))))))))..	chr11:61196975-61197287(-)$1	1	124	164	13.8450
((...(((((((...((((.....))))....))))))))	chrX:46771757-46772018(+)$1	1	86	126	15.4786
))))((((..(((((((((.....)))..)))))).))))	chr3:47459894-47460210(-)$1	1	188	228	13.9614
(((..((.(....((((((......))))))....))).)	chr17:45772668-45772924(+)$1	1	7	47	13.8449
((((((((((((..(.(.(.....).).)..)))))))))	chr21:34143616-34144089(-)$1	1	208	248	20.1596
(.(..((((((((((..(((....))).)))))))))).)	chr1:178994932-178995278(+)$1	1	205	245	18.4000
((((.(((((((..(.(((.....))).)...)))).)))	chr13:50571176-50571517(+)$1	1	262	302	15.9998
((((..(.(..((.((((.(......).)))).))..).)	chr12:53574414-53574714(+)$1	1	13	53	14.3135
(((((((...((..((.(.....).))..))..)))))))	chr22:18573513-18573810(+)$1	1	78	118	16.7025
(((((((((..((.((.(((....))).)).))...))))	chr7:44252172-44252505(+)$1	1	97	137	16.7098
(((((((..(((...((((...))))...)))...)))))	chr12:1100714-1100979(+)$1	1	47	87	17.7145
(.((....((((((.(((......)))))))))....)).	chr18:3262306-3262573(+)$1	1	170	210	14.2603
(.(((((((((....(((..........))))))))))))	chr2:264072-264317(-)$1	1	191	231	13.7144
.((.(((((((((((((.(....).)).))))))))))).	chr19:49622555-49622838(+)$1	1	106	146	16.1008
))((((((((((.((((((.....))))))...)))))))	chr3:129612251-129612505(-)$1	1	211	251	14.8534
((((((((((.(((.(......).))).)).)))))))))	chr17:36955815-36956158(-)$1	1	150	190	17.2254
(((((...((((....(((.....)))...))))...)))	chr8:28748177-28748542(+)$1	1	71	111	19.5054
(((((((.((((((.(.((......)).).)))))).)))	chr1:15850780-15851069(-)$1	1	63	103	14.3933
(((((((...((.(.((((.....)))).).))...))))	chr18:76829256-76829621(+)$1	1	131	171	16.6759
)(((..(((.((....(((.....)))...)).)))..))	chr19:50168136-50168490(-)$1	1	93	133	17.5841
(((((..((((((((((((.....))).))))....))))	chr12:132402866-132403155(+)$1	1	234	274	15.0157
(.((.(((((((((...(((...)))...))))).).)))	chr6:33257347-33257643(+)$1	1	90	130	14.0836
(.(((((((((((.(((((.....))).))))))))))))	chr16:448828-449115(+)$1	1	116	156	20.8566
.((((((((((((((((((.....))).)))))))))).)	chr19:49464848-49465090(+)$1	1	166	206	18.2511
(((((((((((.(.((.(........).)).)))))))))	chr7:91874850-91875103(-)$1	1	61	101	15.0885
((((((..(((((((.(((.....))).)))))))..)))	chr22:37905015-37905275(-)$1	1	58	98	14.9431
.(((((((((((((.(((......)))..)))))))))))	chr8:41348128-41348486(+)$1	1	8	48	21.1755
(((((((((..((..(((......))).)).)))))))))	chr1:245026251-245026553(-)$1	1	191	231	20.8644

#PSSM
= : 0.17	g : 0.15	i : 0.13	f : 0.07	e : 0.07	c : 0.05	: : 0.05	[ : 0.03	b : 0.03	a : 0.03	h : 0.03	C : 0.03	! : 0.01	" : 0.01	# : 0.01	
= : 0.19	g : 0.15	[ : 0.13	i : 0.11	c : 0.05	f : 0.05	b : 0.05	e : 0.05	" : 0.03	h : 0.03	d : 0.01	# : 0.01	a : 0.01	C : 0.01	
= : 0.27	g : 0.17	i : 0.13	f : 0.05	" : 0.05	e : 0.05	b : 0.05	[ : 0.03	h : 0.03	d : 0.01	# : 0.01	! : 0.01	a : 0.01	c : 0.01	
= : 0.27	g : 0.15	i : 0.13	e : 0.07	f : 0.05	" : 0.05	! : 0.05	[ : 0.03	b : 0.03	d : 0.01	# : 0.01	] : 0.01	h : 0.01	c : 0.01	
= : 0.27	g : 0.15	i : 0.15	! : 0.07	e : 0.05	c : 0.05	d : 0.03	f : 0.03	" : 0.03	# : 0.03	[ : 0.03	a : 0.01	
= : 0.27	i : 0.17	g : 0.15	c : 0.09	! : 0.07	e : 0.05	b : 0.05	[ : 0.01	f : 0.01	d : 0.01	# : 0.01	" : 0.01	
= : 0.29	i : 0.15	c : 0.13	g : 0.11	! : 0.09	b : 0.05	f : 0.03	e : 0.01	d : 0.01	a : 0.01	# : 0.01	" : 0.01	
= : 0.25	! : 0.13	i : 0.11	[ : 0.11	g : 0.09	c : 0.07	" : 0.07	e : 0.03	f : 0.03	d : 0.01	# : 0.01	
= : 0.23	a : 0.11	! : 0.11	i : 0.09	f : 0.07	g : 0.07	c : 0.05	" : 0.05	b : 0.03	e : 0.03	d : 0.03	# : 0.01	[ : 0.01	
= : 0.21	! : 0.13	[ : 0.07	i : 0.07	c : 0.07	d : 0.07	f : 0.05	" : 0.05	g : 0.05	e : 0.05	# : 0.03	b : 0.03	a : 0.01	
= : 0.21	c : 0.11	d : 0.09	! : 0.09	i : 0.07	f : 0.07	g : 0.05	e : 0.05	b : 0.05	# : 0.03	a : 0.03	[ : 0.03	" : 0.01	
= : 0.19	b : 0.13	c : 0.11	d : 0.09	f : 0.07	e : 0.07	# : 0.05	i : 0.05	! : 0.03	[ : 0.03	g : 0.03	a : 0.01	$ : 0.01	" : 0.01	
= : 0.13	! : 0.11	# : 0.09	b : 0.09	d : 0.07	" : 0.07	i : 0.05	[ : 0.05	c : 0.05	e : 0.05	f : 0.05	g : 0.03	$ : 0.03	a : 0.01	
! : 0.15	[ : 0.13	" : 0.11	f : 0.09	# : 0.07	= : 0.07	c : 0.05	b : 0.05	d : 0.03	g : 0.03	i : 0.03	$ : 0.03	e : 0.03	a : 0.01	
b : 0.15	" : 0.13	[ : 0.13	! : 0.09	# : 0.07	c : 0.05	a : 0.05	f : 0.05	= : 0.05	g : 0.03	$ : 0.03	d : 0.03	i : 0.01	e : 0.01	
c : 0.25	b : 0.13	[ : 0.09	d : 0.09	" : 0.07	! : 0.05	# : 0.05	f : 0.05	$ : 0.03	a : 0.03	g : 0.01	i : 0.01	e : 0.01	= : 0.01	
c : 0.50	[ : 0.13	d : 0.09	! : 0.05	b : 0.03	f : 0.03	g : 0.01	$ : 0.01	q : 0.01	a : 0.01	o : 0.01	" : 0.01	
c : 0.64	d : 0.09	b : 0.05	f : 0.03	[ : 0.03	a : 0.03	g : 0.01	! : 0.01	q : 0.01	o : 0.01	
c : 0.45	o : 0.21	d : 0.07	a : 0.05	b : 0.03	q : 0.03	f : 0.03	g : 0.01	[ : 0.01	n : 0.01	s : 0.01	
n : 0.39	o : 0.29	c : 0.15	m : 0.03	q : 0.03	d : 0.01	a : 0.01	l : 0.01	s : 0.01	
n : 0.39	o : 0.31	m : 0.13	l : 0.09	q : 0.03	s : 0.01	
n : 0.39	o : 0.31	m : 0.13	l : 0.09	q : 0.03	s : 0.01	
n : 0.39	o : 0.29	m : 0.13	l : 0.07	q : 0.03	d : 0.01	s : 0.01	a : 0.01	
n : 0.37	o : 0.29	m : 0.09	c : 0.07	d : 0.03	q : 0.03	a : 0.03	s : 0.01	] : 0.01	
c : 0.64	o : 0.09	d : 0.07	b : 0.03	] : 0.03	g : 0.01	a : 0.01	s : 0.01	f : 0.01	q : 0.01	
c : 0.64	b : 0.11	d : 0.07	f : 0.03	g : 0.01	a : 0.01	] : 0.01	o : 0.01	s : 0.01	q : 0.01	
c : 0.56	b : 0.07	3 : 0.05	d : 0.05	a : 0.05	2 : 0.03	f : 0.03	g : 0.01	4 : 0.01	i : 0.01	] : 0.01	s : 0.01	
] : 0.47	2 : 0.17	3 : 0.11	f : 0.05	4 : 0.03	d : 0.03	g : 0.01	i : 0.01	e : 0.01	= : 0.01	s : 0.01	
b : 0.17	2 : 0.13	3 : 0.11	a : 0.09	d : 0.07	= : 0.07	i : 0.05	4 : 0.05	c : 0.05	f : 0.05	g : 0.03	e : 0.01	] : 0.01	
b : 0.21	c : 0.11	d : 0.09	= : 0.09	3 : 0.07	f : 0.07	i : 0.05	4 : 0.05	e : 0.05	g : 0.03	] : 0.03	2 : 0.03	a : 0.01	
c : 0.15	] : 0.13	= : 0.13	d : 0.11	b : 0.07	f : 0.07	i : 0.05	2 : 0.05	e : 0.05	g : 0.03	4 : 0.03	3 : 0.03	
= : 0.21	d : 0.11	c : 0.11	e : 0.07	i : 0.07	b : 0.07	a : 0.05	2 : 0.05	4 : 0.05	f : 0.05	3 : 0.03	] : 0.01	g : 0.01	
= : 0.23	] : 0.13	2 : 0.09	i : 0.07	c : 0.07	e : 0.05	4 : 0.05	d : 0.05	g : 0.05	f : 0.05	b : 0.03	3 : 0.03	
= : 0.25	i : 0.13	4 : 0.09	2 : 0.07	c : 0.07	g : 0.07	e : 0.05	3 : 0.05	a : 0.03	f : 0.03	d : 0.03	] : 0.01	b : 0.01	
= : 0.25	i : 0.13	g : 0.11	4 : 0.09	c : 0.07	3 : 0.07	2 : 0.05	f : 0.05	] : 0.05	e : 0.01	d : 0.01	b : 0.01	
= : 0.27	i : 0.11	g : 0.09	c : 0.09	2 : 0.07	a : 0.07	4 : 0.05	3 : 0.05	f : 0.03	] : 0.03	e : 0.01	b : 0.01	d : 0.01	
= : 0.29	i : 0.15	g : 0.11	2 : 0.09	] : 0.07	c : 0.05	b : 0.05	e : 0.03	4 : 0.03	f : 0.01	d : 0.01	3 : 0.01	
= : 0.31	g : 0.13	i : 0.11	c : 0.09	2 : 0.07	b : 0.05	e : 0.05	] : 0.03	f : 0.03	: : 0.01	d : 0.01	a : 0.01	
= : 0.25	g : 0.13	i : 0.13	] : 0.09	c : 0.07	f : 0.07	d : 0.05	3 : 0.05	e : 0.05	2 : 0.01	b : 0.01	
= : 0.23	g : 0.13	i : 0.13	c : 0.09	f : 0.07	e : 0.07	d : 0.05	3 : 0.05	a : 0.05	] : 0.03	b : 0.01	

#score	836.9375998894417
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_UTR_m1_run2.txt

#BEAR
eee####iiiiiiiiinnnnniiiiiiiii4444eee	chr20:34319684-34319928(-)$1	244	153	190	15.6857
==========####bbnnnnnbb22==========cc	chr17:79479238-79479562(-)$1	324	92	129	16.9745
d[bb[cccccc[a[bbnnnnnbb]a]ccc]ccc]bbd	chr9:139726739-139727059(+)$1	320	185	222	14.4865
ccc"""bb[gggggggnnnnnggggggg]bb333ccc	chr11:64535637-64535886(-)$1	249	158	195	15.3946
###accc[gggggggooooooggggggg]ccc]a444	chr16:4400920-4401202(-)$1	282	166	203	13.2961
bb[ccc==========mmmm==========22ccc]b	chr19:55855176-55855488(+)$1	312	13	50	11.7290
[eeeee[a"""eeeeennnnneeeeea]eeeee22dd	chr2:148777888-148778283(-)$1	395	238	275	14.0632
###a!!eeeeeeeeeennnnneeeee]eeeee22a==	chr16:67234210-67234481(+)$1	271	218	255	14.8332
!bb####iiiiiiiiinnnnniiiiiiiii]bb22dd	chr11:71158513-71158824(-)$1	311	65	102	15.2245
=ccc"""a[eeeee[annnnnaeeeee]a333ccc]=	chr16:30773625-30773938(+)$1	313	111	148	16.0537
!!ccc[bb!!aeeeeennnnneeeee]a22bb]ccce	chr1:211477329-211477599(+)$1	270	116	153	14.3122
==========[cccrrrrrrrrrccc333========	chr17:57741234-57741541(+)$1	307	120	157	12.5830
ccc[dddd[eeeee[aooooooa]eeeee]dddd333	chrX:153590406-153590659(-)$1	253	27	64	11.7919
bb!!bb####ccccccnnnnnccc]ccc4444bb22b	chr8:64081355-64081620(+)$1	265	126	163	14.0526
!!eeeee$$$$$ddddnnnnndddd22eeeee22a22	chr17:26902802-26903079(-)$1	277	133	170	13.1875
!!bb[ffffff[acccnnnnnccc]a]ffffff22bb	chr11:62368365-62368679(-)$1	314	19	56	14.1868
####dddd$$$$$cccnnnnnccc4444dddd]iiii	chr9:114154879-114155189(-)$1	310	219	256	14.7235
======[dddd[ddddnnnnndddd22dddd]=====	chr2:86335511-86335778(+)$1	267	152	189	15.2214
b[eeeee!!ccc!!bbnnnnnbb22ccceeeee]bb>	chr7:100483383-100483624(+)$1	241	32	69	12.8831
ee[cccffffff!!bbnnnnnbb22ffffff333ccc	chr12:46757382-46757647(-)$1	265	195	232	13.8433
e!!eeeeeeeeee[bbnnnnnbb]eeeee]eeeee33	chr19:53589392-53589709(-)$1	317	110	147	13.3188
ddddffffff[a[cccooooooccc]affffff22dd	chr7:65440826-65441094(-)$1	268	24	61	11.4811
dddd!!bb[cccddddnnnnndddd]ccc]bb22ddd	chr12:56552281-56552585(+)$1	304	75	112	13.7034
d[ccc[dddd"""cccnnnnnccc22dddd]ccc333	chr16:28845728-28845952(+)$1	224	57	94	15.2941
ddddggggggg[a[bbnnnnnbb]a]ggggggg]ddd	chr22:47158568-47158862(+)$1	294	238	275	14.4140
eeeeccc[cccddddoooooodddd]ccc333ccc]e	chr17:27438473-27438734(-)$1	261	170	207	12.3387
===========!!cccnnnnnccc=============	chr17:7529806-7530075(-)$1	269	74	111	18.5098
dddd[a!!ccc[ddddnnnnndddd]ccc]a]dddd:	chr3:49050525-49050778(+)$1	253	172	209	13.4713
iiiii[bb[iiiiiiiiillliiiiiiiii333bbii	chr11:122932304-122932555(-)$1	251	147	184	12.6271
========[eeeee[aooooooa]eeeee========	chr9:95049936-95050204(-)$1	268	118	155	14.4001
ddd!!ccceeeee[bbnnnnnbbeeeee]ccc333dd	chr16:28855529-28855800(-)$1	271	15	52	14.7091
f[bb!!dddd[bbcccnnnnnccc]bb]dddd22bb]	chr1:19570309-19570605(-)$1	296	133	170	12.7612
c"""cccdddd[ddddoooooodddd]dddd]ccccc	chr1:1250677-1250965(-)$1	288	176	213	12.1314
d!!ggggggg[eeeeennnnneeeee22ggggggg44	chr19:5941692-5941945(-)$1	253	22	59	15.1287
####ccc[ccc!!eeeeellleeeeeccc]cccgggg	chr7:5569349-5569630(-)$1	281	137	174	12.0490
[ccc[ccc[eeeee[annnnna]eeeeeccc]ccc]e	chr12:125398872-125399230(-)$1	358	111	148	15.0625
hhhhhhh==========lll==========22hhhhh	chr11:118922553-118922831(-)$1	278	51	88	11.0608
iiiiiiiii####ddddmmmmdddd4444iiiiiiii	chr16:1910270-1910592(-)$1	322	38	75	12.0366
ffffff::ccc[ddddnnnnndddd333ccc======	chr14:50246306-50246592(+)$1	286	157	194	13.4594
::==========[cccnnnnnccc]==========:C	chr11:61188593-61188943(-)$1	350	262	299	14.1007
ffff[eeeee[eeeeennnnneeeee]eeeee]ffff	chr12:54678032-54678295(+)$1	263	159	196	13.0373
========$$$$$cccnnnnnccc333==========	chr5:179251016-179251305(+)$1	289	110	147	17.4376
b"""ccc[ccc!!ccclllcccccc22ccc22bb]dd	chr19:1271916-1272187(+)$1	271	124	161	11.6344
ciiiiiiiii"""cccooooooccciiiiiiiii22c	chr19:2233802-2234059(-)$1	257	21	58	14.5716
####ffffffa[ddddnnnnndddd]a]ffffff333	chr11:64888322-64888600(-)$1	278	105	142	14.8904
ffffff::ccc[ddddnnnnndddd333ccc======	chr14:50246392-50246654(+)$1	262	71	108	13.4594
diiiiiiiiiccccccnnnnnccc]ccc666666iii	chr1:1192378-1192658(-)$1	280	14	51	13.2803
#bb!!===========nnnnn===========bb]hh	chr9:132841902-132842145(+)$1	243	152	189	16.2372
[a[ccceeeeeeeeeeooooooeeeee]eeeee]ccc	chr9:114137254-114137522(-)$1	268	129	166	11.9860
ccc===========[aooooooa===========]cc	chr3:156867788-156868089(-)$1	301	155	192	15.2360
ccc[ffffffffffffnnnnnffffff]ffffff]cc	chr7:148506140-148506427(-)$1	287	94	131	12.3592
"dddd[ccc[a[bbbbnnnnnbb333bb]a]cccddd	chr16:30764557-30764839(+)$1	282	106	143	13.4259
ccc####ccc[eeeeennnnneeeee333ccc333cc	chr1:54395528-54395778(-)$1	250	37	74	16.4062
""ccc!!dddd!!bboooooobb]dddd]ccc]ccc]	chr19:49497119-49497488(+)$1	369	31	68	12.1178
g[ccc"""bb[a[cccooooooccc]a]bb4444ccc	chr1:155885387-155885642(-)$1	255	95	132	13.4068
eeeeccc"""bb[cccnnnnnccc]bb333cccgggg	chr3:43732730-43732967(+)$1	237	70	107	14.5210
iiiiiiii[bb!!ddddllldddd22bbiiiiiiiii	chr7:26241343-26241650(+)$1	307	200	237	11.7039
ccca!!eeeee!!cccnnnnnccceeeee22a]cccD	chr4:727651-727937(+)$1	286	179	216	14.5419

#otherMatches

#Seq PSSM
UUUUUAUUUUUUUAAUGAUUGGUUAAAAAGUAUUGAA	chr20:34319684-34319928(-)$1	244	153	190	15.6857
UUCCCCGCGGGAGGGCAUUAGGUGGCUGUGGGGAGGG	chr17:79479238-79479562(-)$1	324	92	129	16.9745
GUGGACCUGCUCGGAGAUUGGCUGCUGGCAAGGGCCC	chr9:139726739-139727059(+)$1	320	185	222	14.4865
AGCACGGAUGGAUAAAGAAUAUUUGUCCCUCAUGGCU	chr11:64535637-64535886(-)$1	249	158	195	15.3946
AAACCGUCUGCCUGGAAGAGGCCGGGCAAACGUGGUC	chr16:4400920-4401202(-)$1	282	166	203	13.2961
CCAGCCGCCUUCAUCAACCAUGGUGAGGGUCAGGCAG	chr19:55855176-55855488(+)$1	312	13	50	11.7290
AGGCCAGGACCAGGCGAGCUCCGUCUUGUGGCCACUC	chr2:148777888-148778283(-)$1	395	238	275	14.0632
UCUGAGCAUCCCCUUUGUGAGGAAGGUGGGUGGGCUU	chr16:67234210-67234481(+)$1	271	218	255	14.8332
AUCAAGCAGGCAUUUGGAGCACAGGUGUCUAGAAACU	chr11:71158513-71158824(-)$1	311	65	102	15.2245
GGUGUUUGGGGCUGUGGAACACCAGCCGUUCCCACAU	chr16:30773625-30773938(+)$1	313	111	148	16.0537
CGUUGGACCACAGAGGAGCAGCUUCUAGCAGUGCAAG	chr1:211477329-211477599(+)$1	270	116	153	14.3122
AGUGAGUUCAAUGAAACACAUUCUCAGCAUGAAUUCA	chr17:57741234-57741541(+)$1	307	120	157	12.5830
GGGCCCUGGCCUCAGUCGCACUGGUGAGGACAGGUAC	chrX:153590406-153590659(-)$1	253	27	64	11.7919
GCUUGGCGAAGGCCCGAGCCCCGGAGCUCCACCCUCG	chr8:64081355-64081620(+)$1	265	126	163	14.0526
AGAAAAGGGAAGCUGGAAAGGCCAGGACUUUUGCCUA	chr17:26902802-26903079(-)$1	277	133	170	13.1875
CGUCAGGGGCUCCCCGGGGCACGGAGUGGCCUUCGGA	chr11:62368365-62368679(-)$1	314	19	56	14.1868
AAGAUUCGGCUUUCCAUGUUUUGGUUUAUGAAGCCUU	chr9:114154879-114155189(-)$1	310	219	256	14.7235
GUAUUCUAUCAGUGUUCAUUCAGCAAAUGGUUGAGUG	chr2:86335511-86335778(+)$1	267	152	189	15.2214
CAGGGGAACGUUAAUGGCCAACACCAACUCCCUCGCU	chr7:100483383-100483624(+)$1	241	32	69	12.8831
AAAUGAAGCUGCUAGUUUUCUAUGUGUAGUUCCAUCA	chr12:46757382-46757647(-)$1	265	195	232	13.8433
UAAAGACUCUUUUAUGUUACCCAAGGAAGAAGUCUGG	chr19:53589392-53589709(-)$1	317	110	147	13.3188
GUGCCAGGUGUCAGCCUCUGGUGGCCGUACCUGAUGC	chr7:65440826-65441094(-)$1	268	24	61	11.4811
CUGAAACAGGAGUUUGUGGGUCAGAGUUUGUGGGUCA	chr12:56552281-56552585(+)$1	304	75	112	13.7034
GCAGGUGGAGCUUGAGCUCUCCUCUCCUCCUCCUCUU	chr16:28845728-28845952(+)$1	224	57	94	15.2941
CCUCCUGGGCUGCGGGUGGAGUCGGGGGUCUGGAGAG	chr22:47158568-47158862(+)$1	294	238	275	14.4140
CUUUCUCCUGGGCCACAGCCAUGGCACCAACUGGGUA	chr17:27438473-27438734(-)$1	261	170	207	12.3387
UGAAAGAGGGAGUGAGAAAACCUUUUUCUUUUUUGAC	chr17:7529806-7530075(-)$1	269	74	111	18.5098
CCAUGGUGGCUAUGUGUAUACCACAGGGCGUGAUGGA	chr3:49050525-49050778(+)$1	253	172	209	13.4713
GUUCUUGGCGUGCUUCCAGUAUGGGGGUACAUUCCGG	chr11:122932304-122932555(-)$1	251	147	184	12.6271
CUGCUGAGUGGAAGGUAUGUUGGGUUUUUUUCAGUAG	chr9:95049936-95050204(-)$1	268	118	155	14.4001
GAGAAGCCUUUCCUGCUGCCUGUGGAGGCGGUGUACU	chr16:28855529-28855800(-)$1	271	15	52	14.7091
UGUGGAUGCCAUGCUGCUGCACGGACAGGGUAAGCAG	chr1:19570309-19570605(-)$1	296	133	170	12.7612
CUUAGGGUAAGUAGGCUGAGGUGUCUUUUUGUCCCGU	chr1:1250677-1250965(-)$1	288	176	213	12.1314
UUGUUACGGCCCCGAGAGUUGCUCGGCUGCCGUGAGC	chr19:5941692-5941945(-)$1	253	22	59	15.1287
GCCUGGCUUCCUGCCGCGCGCCGCGGGGACGCCUCCG	chr7:5569349-5569630(-)$1	281	137	174	12.0490
UGCUGGGCUGGCCGGGGCUUUCGUGGCCGCCGGGCCG	chr12:125398872-125399230(-)$1	358	111	148	15.0625
CUUGGCUGAGUUCUGCCUGGGGCAGGGCUUUGGGCUG	chr11:118922553-118922831(-)$1	278	51	88	11.0608
AACAGGAUGUUAUUUAGGAUGUUAGUGUUUAUCUUGU	chr16:1910270-1910592(-)$1	322	38	75	12.0366
AGGAUGCUAGAAUGAAUGAUCUUCACUAUCUUAAUCU	chr14:50246306-50246592(+)$1	286	157	194	13.4594
GAAGAAAGCAAUGAUUAAGUGGGUAGUUGCUUUUUCU	chr11:61188593-61188943(-)$1	350	262	299	14.1007
UAACAUUAUAAUUGCAGUAAUUGUGGAUAUAAAGUUA	chr12:54678032-54678295(+)$1	263	159	196	13.0373
GUGGCAGGAACCUUGACCCGCUCACUGCCUGCCGCUC	chr5:179251016-179251305(+)$1	289	110	147	17.4376
GACAGUUACGGUAAGUCACACUCCGAGGGCGCCACGC	chr19:1271916-1272187(+)$1	271	124	161	11.6344
CUCAUCUUCUACAGGAACGAAAUCCGGAAGGUGACGG	chr19:2233802-2234059(-)$1	257	21	58	14.5716
UUCCCUGGCCCGUGCUGGAAAAGUGAGAGGUCAGACU	chr11:64888322-64888600(-)$1	278	105	142	14.8904
AGGAUGCUAGAAUGAAUGAUCUUCACUAUCUUAAUCU	chr14:50246392-50246654(+)$1	262	71	108	13.4594
CAAACCUCCCAGUAUCUAUAUGAUCACUCCCAACGGG	chr1:1192378-1192658(-)$1	280	14	51	13.2803
CGUAAGGUGGAAACUGGCUUUCAGUUUUCACUACCUG	chr9:132841902-132842145(+)$1	243	152	189	16.2372
GGUAAGUGUACUUUCCACAAGAGGAAAUGUGCAUCUU	chr9:114137254-114137522(-)$1	268	129	166	11.9860
UGGUUUCUUCUUUUUGGUACUACAGAAGAGGAAAUCC	chr3:156867788-156868089(-)$1	301	155	192	15.2360
GGGAUAGUUGUUUGUUAUGUGAACAAGUCAGUUAACC	chr7:148506140-148506427(-)$1	287	94	131	12.3592
AGGGCAGGGAGGAGCCGAGGAGGAGACUGCACCCGCC	chr16:30764557-30764839(+)$1	282	106	143	13.4259
UUGAAAGGCUUGUAAUCCAAAGUUACUUUGGUAAGCA	chr1:54395528-54395778(-)$1	250	37	74	16.4062
UGGCAGUUGGUGAGCAUCAUGGCAACCGUUGUAAGUG	chr19:49497119-49497488(+)$1	369	31	68	12.1178
ggugggcagaucaccuaaggucaggaguucaagacca	chr1:155885387-155885642(-)$1	255	95	132	13.4068
GGUCCGCCCCGUUGUUGUAUAAGCCACCCCGCGGGCC	chr3:43732730-43732967(+)$1	237	70	107	14.5210
CUUCUCGCCGGACCCCGCGCCGGGAGCUGCGGGAAGG	chr7:26241343-26241650(+)$1	307	200	237	11.7039
CACGGAGCAGCAAGGCCAGUAGCCGCUGUGACAGUGC	chr4:727651-727937(+)$1	286	179	216	14.5419

#DB
(((....(((((((((.....)))))))))....)))	chr20:34319684-34319928(-)$1	1	153	190	15.6857
((((((((((....((.....))..))))))))))((	chr17:79479238-79479562(-)$1	1	92	129	16.9745
(.((.((((((.(.((.....)).).))).))).)))	chr9:139726739-139727059(+)$1	1	185	222	14.4865
(((...((.(((((((.....))))))).))...)))	chr11:64535637-64535886(-)$1	1	158	195	15.3946
...((((.(((((((......))))))).))).)...	chr16:4400920-4401202(-)$1	1	166	203	13.2961
((.(((((((((((((....))))))))))..))).)	chr19:55855176-55855488(+)$1	1	13	50	11.7290
.(((((.(...(((((.....)))))).)))))..))	chr2:148777888-148778283(-)$1	1	238	275	14.0632
...(..((((((((((.....))))).)))))..)))	chr16:67234210-67234481(+)$1	1	218	255	14.8332
.((....(((((((((.....))))))))).))..))	chr11:71158513-71158824(-)$1	1	65	102	15.2245
((((...(.(((((.(.....)))))).)...))).)	chr16:30773625-30773938(+)$1	1	111	148	16.0537
..(((.((..((((((.....))))).)..)).))))	chr1:211477329-211477599(+)$1	1	116	153	14.3122
((((((((((.(((.........)))...))))))))	chr17:57741234-57741541(+)$1	1	120	157	12.5830
(((.((((.(((((.(......).))))).))))...	chrX:153590406-153590659(-)$1	1	27	64	11.7919
((..((....((((((.....))).)))....))..)	chr8:64081355-64081620(+)$1	1	126	163	14.0526
..(((((.....((((.....))))..)))))..)..	chr17:26902802-26903079(-)$1	1	133	170	13.1875
..((.((((((.((((.....))).).))))))..))	chr11:62368365-62368679(-)$1	1	19	56	14.1868
....((((.....(((.....)))....)))).))))	chr9:114154879-114155189(-)$1	1	219	256	14.7235
((((((.((((.((((.....))))..)))).)))))	chr2:86335511-86335778(+)$1	1	152	189	15.2214
(.(((((..(((..((.....))..)))))))).)).	chr7:100483383-100483624(+)$1	1	32	69	12.8831
((.(((((((((..((.....))..))))))...)))	chr12:46757382-46757647(-)$1	1	195	232	13.8433
(..((((((((((.((.....)).))))).)))))..	chr19:53589392-53589709(-)$1	1	110	147	13.3188
((((((((((.(.(((......))).)))))))..))	chr7:65440826-65441094(-)$1	1	24	61	11.4811
((((..((.(((((((.....)))).))).))..)))	chr12:56552281-56552585(+)$1	1	75	112	13.7034
(.(((.((((...(((.....)))..)))).)))...	chr16:28845728-28845952(+)$1	1	57	94	15.2941
(((((((((((.(.((.....)).).))))))).)))	chr22:47158568-47158862(+)$1	1	238	275	14.4140
(((((((.(((((((......)))).)))...))).)	chr17:27438473-27438734(-)$1	1	170	207	12.3387
(((((((((((..(((.....))))))))))))))))	chr17:7529806-7530075(-)$1	1	74	111	18.5098
((((.(..(((.((((.....)))).))).).)))).	chr3:49050525-49050778(+)$1	1	172	209	13.4713
(((((.((.(((((((((...)))))))))...))))	chr11:122932304-122932555(-)$1	1	147	184	12.6271
((((((((.(((((.(......).)))))))))))))	chr9:95049936-95050204(-)$1	1	118	155	14.4001
(((..((((((((.((.....))))))).)))...))	chr16:28855529-28855800(-)$1	1	15	52	14.7091
(.((..((((.(((((.....))).)).))))..)).	chr1:19570309-19570605(-)$1	1	133	170	12.7612
(...(((((((.((((......)))).)))).)))))	chr1:1250677-1250965(-)$1	1	176	213	12.1314
(..(((((((.(((((.....)))))..)))))))..	chr19:5941692-5941945(-)$1	1	22	59	15.1287
....(((.(((..(((((...)))))))).)))))))	chr7:5569349-5569630(-)$1	1	137	174	12.0490
.(((.(((.(((((.(.....).)))))))).))).)	chr12:125398872-125399230(-)$1	1	111	148	15.0625
(((((((((((((((((...))))))))))..)))))	chr11:118922553-118922831(-)$1	1	51	88	11.0608
(((((((((....((((....))))....))))))))	chr16:1910270-1910592(-)$1	1	38	75	12.0366
))))))..(((.((((.....))))...)))((((((	chr14:50246306-50246592(+)$1	1	157	194	13.4594
..((((((((((.(((.....))).)))))))))).)	chr11:61188593-61188943(-)$1	1	262	299	14.1007
((((.(((((.(((((.....))))).))))).))))	chr12:54678032-54678295(+)$1	1	159	196	13.0373
((((((((.....(((.....)))...))))))))))	chr5:179251016-179251305(+)$1	1	110	147	17.4376
(...(((.(((..(((...))))))..)))..)).))	chr19:1271916-1272187(+)$1	1	124	161	11.6344
((((((((((...(((......))))))))))))..)	chr19:2233802-2234059(-)$1	1	21	58	14.5716
....(((((((.((((.....)))).).))))))...	chr11:64888322-64888600(-)$1	1	105	142	14.8904
))))))..(((.((((.....))))...)))((((((	chr14:50246392-50246654(+)$1	1	71	108	13.4594
)(((((((((((((((.....))).)))......)))	chr1:1192378-1192658(-)$1	1	14	51	13.2803
.((..(((((((((((.....))))))))))))).))	chr9:132841902-132842145(+)$1	1	152	189	16.2372
.(.(((((((((((((......))))).))))).)))	chr9:114137254-114137522(-)$1	1	129	166	11.9860
((((((((((((((.(......)))))))))))).))	chr3:156867788-156868089(-)$1	1	155	192	15.2360
(((.((((((((((((.....)))))).)))))).))	chr7:148506140-148506427(-)$1	1	94	131	12.3592
.((((.(((.(.((((.....))...)).).))))))	chr16:30764557-30764839(+)$1	1	106	143	13.4259
(((....(((.(((((.....)))))...)))...))	chr1:54395528-54395778(-)$1	1	37	74	16.4062
..(((..((((..((......)).)))).))).))).	chr19:49497119-49497488(+)$1	1	31	68	12.1178
(.(((...((.(.(((......))).).))....)))	chr1:155885387-155885642(-)$1	1	95	132	13.4068
))))(((...((.(((.....))).))...)))((((	chr3:43732730-43732967(+)$1	1	70	107	14.5210
((((((((.((..((((...))))..)))))))))))	chr7:26241343-26241650(+)$1	1	200	237	11.7039
((((..(((((..(((.....))))))))..).))))	chr4:727651-727937(+)$1	1	179	216	14.5419

#PSSM
d : 0.15	c : 0.13	= : 0.12	# : 0.10	e : 0.08	b : 0.06	! : 0.06	f : 0.06	[ : 0.05	i : 0.05	" : 0.03	h : 0.01	: : 0.01	g : 0.01	
c : 0.13	= : 0.10	d : 0.10	e : 0.08	[ : 0.08	# : 0.08	! : 0.08	i : 0.08	b : 0.06	" : 0.05	f : 0.05	h : 0.01	: : 0.01	a : 0.01	
c : 0.20	= : 0.12	e : 0.10	d : 0.10	b : 0.08	# : 0.08	i : 0.08	[ : 0.05	! : 0.05	f : 0.05	" : 0.03	h : 0.01	
c : 0.15	= : 0.13	# : 0.10	e : 0.10	d : 0.08	i : 0.08	b : 0.05	" : 0.05	a : 0.05	! : 0.05	f : 0.05	[ : 0.03	g : 0.01	h : 0.01	
c : 0.22	= : 0.13	! : 0.10	[ : 0.08	f : 0.08	i : 0.08	e : 0.06	# : 0.05	d : 0.05	" : 0.03	g : 0.03	b : 0.01	h : 0.01	
c : 0.20	= : 0.15	f : 0.10	e : 0.08	! : 0.08	[ : 0.06	i : 0.06	# : 0.05	" : 0.05	d : 0.03	g : 0.03	b : 0.01	a : 0.01	h : 0.01	
c : 0.17	= : 0.15	e : 0.12	f : 0.08	# : 0.06	b : 0.06	d : 0.06	i : 0.06	[ : 0.03	" : 0.03	g : 0.03	! : 0.03	: : 0.03	h : 0.01	
= : 0.17	d : 0.12	i : 0.10	c : 0.08	e : 0.08	f : 0.08	b : 0.06	[ : 0.06	a : 0.03	! : 0.03	g : 0.03	: : 0.03	" : 0.03	# : 0.01	$ : 0.01	
c : 0.15	= : 0.13	[ : 0.13	e : 0.10	i : 0.08	f : 0.08	d : 0.08	g : 0.05	$ : 0.05	" : 0.03	! : 0.03	# : 0.01	b : 0.01	
c : 0.17	e : 0.17	= : 0.13	i : 0.08	f : 0.08	d : 0.08	g : 0.06	$ : 0.05	" : 0.03	# : 0.03	b : 0.03	! : 0.01	[ : 0.01	
c : 0.18	e : 0.15	[ : 0.12	= : 0.10	i : 0.05	g : 0.05	" : 0.05	a : 0.05	$ : 0.05	f : 0.05	d : 0.05	# : 0.03	b : 0.03	
e : 0.22	[ : 0.17	! : 0.10	= : 0.08	c : 0.08	i : 0.05	$ : 0.05	# : 0.03	g : 0.03	f : 0.03	a : 0.03	" : 0.03	b : 0.03	d : 0.01	
e : 0.22	d : 0.15	! : 0.13	= : 0.06	[ : 0.06	i : 0.05	a : 0.05	c : 0.05	# : 0.03	g : 0.03	$ : 0.03	" : 0.03	b : 0.03	f : 0.01	
c : 0.27	e : 0.20	d : 0.18	[ : 0.06	= : 0.06	i : 0.05	g : 0.03	! : 0.03	b : 0.03	# : 0.01	f : 0.01	
c : 0.25	d : 0.18	b : 0.15	e : 0.13	[ : 0.08	i : 0.05	= : 0.05	g : 0.03	r : 0.01	f : 0.01	
c : 0.25	d : 0.17	b : 0.13	e : 0.13	a : 0.08	i : 0.05	o : 0.05	= : 0.05	g : 0.01	r : 0.01	f : 0.01	
n : 0.67	o : 0.18	d : 0.03	m : 0.01	r : 0.01	i : 0.01	e : 0.01	= : 0.01	l : 0.01	
n : 0.67	o : 0.18	l : 0.05	m : 0.03	r : 0.01	i : 0.01	e : 0.01	
n : 0.67	o : 0.18	l : 0.08	m : 0.03	r : 0.01	
n : 0.67	o : 0.18	l : 0.06	m : 0.03	r : 0.01	c : 0.01	
n : 0.67	o : 0.18	= : 0.03	l : 0.03	r : 0.01	m : 0.01	c : 0.01	d : 0.01	
c : 0.20	d : 0.17	b : 0.15	o : 0.13	e : 0.12	i : 0.05	= : 0.05	g : 0.03	a : 0.03	r : 0.01	f : 0.01	
c : 0.25	d : 0.18	b : 0.15	e : 0.15	i : 0.05	= : 0.05	a : 0.05	g : 0.03	r : 0.01	] : 0.01	f : 0.01	
c : 0.27	e : 0.18	d : 0.18	] : 0.10	= : 0.06	i : 0.05	2 : 0.05	g : 0.03	f : 0.01	3 : 0.01	
e : 0.25	d : 0.18	] : 0.10	2 : 0.08	= : 0.08	c : 0.08	i : 0.05	a : 0.03	g : 0.03	3 : 0.03	4 : 0.01	f : 0.01	
e : 0.25	] : 0.13	= : 0.12	2 : 0.08	i : 0.06	c : 0.06	3 : 0.06	g : 0.03	4 : 0.03	f : 0.03	b : 0.03	d : 0.03	a : 0.01	
c : 0.13	e : 0.13	= : 0.12	] : 0.08	3 : 0.08	i : 0.06	a : 0.06	2 : 0.06	b : 0.06	g : 0.05	4 : 0.03	f : 0.03	d : 0.03	
c : 0.15	e : 0.15	= : 0.13	] : 0.12	3 : 0.08	i : 0.06	d : 0.06	g : 0.05	f : 0.05	4 : 0.03	b : 0.03	a : 0.01	2 : 0.01	
e : 0.17	c : 0.15	= : 0.13	i : 0.08	] : 0.08	f : 0.08	d : 0.08	3 : 0.05	4 : 0.03	g : 0.03	a : 0.01	2 : 0.01	6 : 0.01	b : 0.01	
= : 0.17	c : 0.13	i : 0.10	] : 0.10	e : 0.10	f : 0.08	d : 0.08	3 : 0.05	b : 0.03	2 : 0.03	g : 0.03	4 : 0.01	6 : 0.01	a : 0.01	
c : 0.17	= : 0.13	e : 0.12	d : 0.08	f : 0.08	2 : 0.06	4 : 0.05	b : 0.05	] : 0.05	3 : 0.05	i : 0.05	g : 0.03	a : 0.01	6 : 0.01	
= : 0.17	c : 0.15	e : 0.12	3 : 0.08	f : 0.06	] : 0.06	4 : 0.05	2 : 0.05	b : 0.05	d : 0.05	i : 0.05	g : 0.03	6 : 0.01	a : 0.01	
= : 0.17	c : 0.17	] : 0.10	3 : 0.08	e : 0.06	2 : 0.06	b : 0.06	f : 0.06	i : 0.05	4 : 0.03	d : 0.03	g : 0.03	h : 0.01	6 : 0.01	
= : 0.17	c : 0.17	2 : 0.13	] : 0.06	3 : 0.06	b : 0.06	i : 0.06	g : 0.05	f : 0.05	4 : 0.03	d : 0.03	a : 0.01	e : 0.01	h : 0.01	6 : 0.01	
c : 0.20	= : 0.15	2 : 0.10	3 : 0.08	b : 0.06	i : 0.06	d : 0.06	] : 0.06	g : 0.05	e : 0.03	a : 0.03	4 : 0.01	h : 0.01	f : 0.01	
c : 0.20	d : 0.15	= : 0.13	i : 0.08	b : 0.06	] : 0.06	3 : 0.06	2 : 0.05	4 : 0.03	g : 0.03	h : 0.03	e : 0.01	: : 0.01	f : 0.01	
c : 0.17	d : 0.15	= : 0.15	i : 0.08	e : 0.06	3 : 0.06	b : 0.05	4 : 0.03	] : 0.03	g : 0.03	h : 0.03	2 : 0.01	> : 0.01	: : 0.01	C : 0.01	f : 0.01	D : 0.01	

#score	806.8394374956621
#seq	58
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_CDS_m3_run1.txt

#BEAR
::::::::::::::::::::::	chrM:13585-13790(+)$1	205	146	168	10.0204
::::::::::::::::::::::	chr6:87968240-87968540(+)$1	300	256	278	10.0204
::::::::::::::::::::::	chrM:10023-10247(+)$1	224	39	61	10.0204
::::::::::::::::::::::	chrM:8346-8594(+)$1	248	76	98	10.0204
::::::::::::::::::::::	chrM:8601-8810(+)$1	209	0	22	10.0204
::::::::::::::::::::::	chrM:7650-7856(+)$1	206	157	179	10.0204
::::::::::::::::::::::	chrM:5241-5508(+)$1	267	77	99	10.0204
::::::::::::::::::::::	chrM:13610-13817(+)$1	207	151	173	10.0204
::::::::::::::::::::::	chr10:860347-860666(-)$1	319	139	161	10.0204
::::::::::::::::::::::	chrM:10837-11051(+)$1	214	87	109	10.0204
::::::::::::::::::::::	chrM:9978-10223(+)$1	245	82	104	10.0204
::::::::::::::::::::::	chrM:11030-11234(+)$1	204	0	22	10.0204
::::::::::::::::::::::	chrM:7576-7832(+)$1	256	131	153	10.0204
::::::::::::::::::::::	chrM:14702-14952(+)$1	250	101	123	10.0204
::::::::::::::::::::::	chrM:15721-15968(+)$1	247	87	109	10.0204
::::::::::::::::::::::	chrM:13697-13907(+)$1	210	75	97	10.0204
::::::::::::::::::::::	chrM:12288-12494(+)$1	206	62	84	10.0204
::::::::::::::::::::::	chrM:13041-13255(+)$1	214	13	35	10.0204
::::::::::::::::::::::	chrM:13617-13832(+)$1	215	147	169	10.0204
::::::::::::::::::::::	chrM:10967-11185(+)$1	218	0	22	10.0204
::::::::::::::::::::::	chrM:10852-11063(+)$1	211	0	22	10.0204
::::::::::::::::::::::	chrM:13650-13862(+)$1	212	0	22	10.0204
::::::::::::::::::::::	chrM:5007-5276(+)$1	269	96	118	10.0204
::::::::::::::::::::::	chrM:13576-13779(+)$1	203	155	177	10.0204
::::::::::::::::::::::	chrM:8561-8765(+)$1	204	66	88	10.0204
::::::::::::::::::::::	chrM:8596-8798(+)$1	202	0	22	10.0204
::::::::::::::::::::::	chrM:12282-12488(+)$1	206	68	90	10.0204
::::::::::::::::::::::	chrM:8559-8761(+)$1	202	68	90	10.0204
::::::::::::::::::::::	chrM:9294-9543(+)$1	249	217	239	10.0204
::::::::::::::::::::::	chrM:8556-8759(+)$1	203	71	93	10.0204
::::::::::::::::::::::	chrM:8318-8546(+)$1	228	25	47	10.0204
::::::::::::::::::::::	chrM:9228-9463(+)$1	235	118	140	10.0204
::::::::::::::::::::::	chrM:13510-13763(+)$1	253	23	45	10.0204
::::::::::::::::::::::	chrM:13579-13785(+)$1	206	152	174	10.0204
::::::::::::::::::::::	chrM:7674-7880(+)$1	206	133	155	10.0204
::::::::::::::::::::::	chrM:13604-13810(+)$1	206	126	148	10.0204
::::::::::::::::::::::	chrM:11024-11230(+)$1	206	0	22	10.0204
::::::::::::::::::::::	chrM:8610-8813(+)$1	203	0	22	10.0204
::::::::::::::::::::::	chrM:13644-13850(+)$1	206	0	22	10.0204
::::::::::::::::::::::	chrM:13725-13959(+)$1	234	119	141	10.0204
::::::::::::::::::::::	chrM:4602-4857(+)$1	255	0	22	10.0204
::::::::::::::::::::::	chrM:10175-10422(+)$1	247	89	111	10.0204
::::::::::::::::::::::	chr22:26931871-26932191(-)$1	320	185	207	10.0204
::::::::::::::::::::::	chrM:13707-13918(+)$1	211	65	87	10.0204
::::::::::::::::::::::	chrM:9197-9428(+)$1	231	0	22	10.0204
::::::::::::::::::::::	chrM:10986-11193(+)$1	207	33	55	10.0204
::::::::::::::::::::::	chrM:9143-9371(+)$1	228	0	22	10.0204
::::::::::::::::::::::	chrM:12607-12827(+)$1	220	64	86	10.0204
::::::::::::::::::::::	chrM:8598-8801(+)$1	203	0	22	10.0204
::::::::::::::::::::::	chrM:10863-11072(+)$1	209	0	22	10.0204
::::::::::::::::::::::	chrM:12302-12530(+)$1	228	48	70	10.0204
::::::::::::::::::::::	chrM:8613-8839(+)$1	226	0	22	10.0204
::::::::::::::::::::::	chr5:34813486-34813804(+)$1	318	134	156	10.0204
::::::::::::::::::::::	chrM:10873-11115(+)$1	242	0	22	10.0204
::::::::::::::::::::::	chrM:13718-13925(+)$1	207	126	148	10.0204
::::::::::::::::::::::	chrM:13664-13897(+)$1	233	0	22	10.0204
::::::::::::::::::::::	chrM:5076-5283(+)$1	207	0	22	10.0204
::::::::::::::::::::::	chr3:65361510-65361830(-)$1	320	113	135	10.0204
::::::::::::::::::::::	chrM:7712-7935(+)$1	223	0	22	10.0204
::::::::::::::::::::::	chrM:12294-12498(+)$1	204	81	103	10.0204
::::::::::::::::::::::	chrM:11019-11224(+)$1	205	0	22	10.0204
::::::::::::::::::::::	chrM:13590-13795(+)$1	205	140	162	10.0204
::::::::::::::::::::::	chrM:10934-11156(+)$1	222	0	22	10.0204
::::::::::::::::::::::	chr12:56558156-56558465(-)$1	309	68	90	10.0204
::::::::::::::::::::::	chrM:13572-13776(+)$1	204	159	181	10.0204
::::::::::::::::::::::	chrM:10993-11219(+)$1	226	28	50	10.0204
::::::::::::::::::::::	chrM:13566-13772(+)$1	206	165	187	10.0204

#otherMatches

#Seq PSSM
AUUUCUCAUUACUAACAACAUU	chrM:13585-13790(+)$1	205	146	168	10.0204
CCCCUUUAACAUUAAAAACUGA	chr6:87968240-87968540(+)$1	300	256	278	10.0204
AACUUCGCCUUAAUUUUAAUAA	chrM:10023-10247(+)$1	224	39	61	10.0204
ACUAUUCCUCAUCACCCAACUA	chrM:8346-8594(+)$1	248	76	98	10.0204
AUUUCCCCCUCUAUUGAUCCCC	chrM:8601-8810(+)$1	209	0	22	10.0204
CCUCAUCGCCCUCCCAUCCCUA	chrM:7650-7856(+)$1	206	157	179	10.0204
CACCAUCACCCUCCUUAACCUC	chrM:5241-5508(+)$1	267	77	99	10.0204
AUCCCCCUUCCAAACAACAAUC	chrM:13610-13817(+)$1	207	151	173	10.0204
CUUUAAUAUUUGCUAAUAAUUU	chr10:860347-860666(-)$1	319	139	161	10.0204
CUUUUCCUCCGACCCCCUAACA	chrM:10837-11051(+)$1	214	87	109	10.0204
UAAACUUCGCCUUAAUUUUAAU	chrM:9978-10223(+)$1	245	82	104	10.0204
CGAAAAAAACUCUACCUCUCUA	chrM:11030-11234(+)$1	204	0	22	10.0204
CCCUUUUCCUAACACUCACAAC	chrM:7576-7832(+)$1	256	131	153	10.0204
CGACCUCCCCACCCCAUCCAAC	chrM:14702-14952(+)$1	250	101	123	10.0204
AUCCGUACUAUACUUCACAACA	chrM:15721-15968(+)$1	247	87	109	10.0204
AAACAACAAUCCCCCUCUACCU	chrM:13697-13907(+)$1	210	75	97	10.0204
CUACUAUAACCACCCUAACCCU	chrM:12288-12494(+)$1	206	62	84	10.0204
CCCACCCCAGUCUCAGCCCUAC	chrM:13041-13255(+)$1	214	13	35	10.0204
CCCCUUCCAAACAACAAUCCCC	chrM:13617-13832(+)$1	215	147	169	10.0204
ACCUGACUCCUACCCCUCACAA	chrM:10967-11185(+)$1	218	0	22	10.0204
CCUAAUUAUUAGCAUCAUCCCC	chrM:10852-11063(+)$1	211	0	22	10.0204
CACCCUUACUAACAUUAACGAA	chrM:13650-13862(+)$1	212	0	22	10.0204
ACUACUACCGCAUUCCUACUAC	chrM:5007-5276(+)$1	269	96	118	10.0204
AUUUCUCAUUACUAACAACAUU	chrM:13576-13779(+)$1	203	155	177	10.0204
CCAAAUAUCUCAUCAACAACCG	chrM:8561-8765(+)$1	204	66	88	10.0204
AUUCUAUUUCCCCCUCUAUUGA	chrM:8596-8798(+)$1	202	0	22	10.0204
CUACUAUAACCACCCUAACCCU	chrM:12282-12488(+)$1	206	68	90	10.0204
CCAAAUAUCUCAUCAACAACCG	chrM:8559-8761(+)$1	202	68	90	10.0204
ACCACUCCAGCCUAGCCCCUAC	chrM:9294-9543(+)$1	249	217	239	10.0204
CCAAAUAUCUCAUCAACAACCG	chrM:8556-8759(+)$1	203	71	93	10.0204
AACCAACACCUCUUUACAGUGA	chrM:8318-8546(+)$1	228	25	47	10.0204
UACUAACCAACACACUAACCAU	chrM:9228-9463(+)$1	235	118	140	10.0204
AAACAUAUCAUACACAAACGCC	chrM:13510-13763(+)$1	253	23	45	10.0204
AUUUCUCAUUACUAACAACAUU	chrM:13579-13785(+)$1	206	152	174	10.0204
CCUCAUCGCCCUCCCAUCCCUA	chrM:7674-7880(+)$1	206	133	155	10.0204
GAUUUCUCAUUACUAACAACAU	chrM:13604-13810(+)$1	206	126	148	10.0204
CUAUCACGAAAAAAACUCUACC	chrM:11024-11230(+)$1	206	0	22	10.0204
UCUAUUGAUCCCCACCUCCAAA	chrM:8610-8813(+)$1	203	0	22	10.0204
CUUCCCCACCCUUACUAACAUU	chrM:13644-13850(+)$1	206	0	22	10.0204
ACCUCAACUACCUAACCAACAA	chrM:13725-13959(+)$1	234	119	141	10.0204
ACCAAAAAAAUAAACCCUCGUU	chrM:4602-4857(+)$1	255	0	22	10.0204
UUGCCCUCCUUUUACCCCUACC	chrM:10175-10422(+)$1	247	89	111	10.0204
uacacuaauuucaucuuauuuc	chr22:26931871-26932191(-)$1	320	185	207	10.0204
AAACAACAAUCCCCCUCUACCU	chrM:13707-13918(+)$1	211	65	87	10.0204
ACAACACAUAAUGACCCACCAA	chrM:9197-9428(+)$1	231	0	22	10.0204
AACCACUAUCACGAAAAAAACU	chrM:10986-11193(+)$1	207	33	55	10.0204
UCGCCUUAAUCCAAGCCUACGU	chrM:9143-9371(+)$1	228	0	22	10.0204
CAAACAUUAAUCAGUUCUUCAA	chrM:12607-12827(+)$1	220	64	86	10.0204
UCUAUUUCCCCCUCUAUUGAUC	chrM:8598-8801(+)$1	203	0	22	10.0204
GCAUCAUCCCCCUACUAUUUUU	chrM:10863-11072(+)$1	209	0	22	10.0204
CUACUAUAACCACCCUAACCCU	chrM:12302-12530(+)$1	228	48	70	10.0204
AUUGAUCCCCACCUCCAAAUAU	chrM:8613-8839(+)$1	226	0	22	10.0204
CCAGACUUUACUAACCAAACUA	chr5:34813486-34813804(+)$1	318	134	156	10.0204
CCUACUAUUUUUUAACCAAAUC	chrM:10873-11115(+)$1	242	0	22	10.0204
ACCUCAACUACCUAACCAACAA	chrM:13718-13925(+)$1	207	126	148	10.0204
UUAACGAAAAUAACCCCACCCU	chrM:13664-13897(+)$1	233	0	22	10.0204
CUUAAUUUAACUAUUUAUAUUA	chrM:5076-5283(+)$1	207	0	22	10.0204
ACACUUAACCUUCUCUUUCCCU	chr3:65361510-65361830(-)$1	320	113	135	10.0204
UUCCUAACACUCACAACAAAAC	chrM:7712-7935(+)$1	223	0	22	10.0204
UUCCCUAAUUCCCCCCAUCCUU	chrM:12294-12498(+)$1	204	81	103	10.0204
AACCACUAUCACGAAAAAAACU	chrM:11019-11224(+)$1	205	0	22	10.0204
GAUUUCUCAUUACUAACAACAU	chrM:13590-13795(+)$1	205	140	162	10.0204
GACCCCCUAACAACCCCCCUCC	chrM:10934-11156(+)$1	222	0	22	10.0204
GCCUCCUCCUCCUCCUCCUGCU	chr12:56558156-56558465(-)$1	309	68	90	10.0204
AUUUCUCAUUACUAACAACAUU	chrM:13572-13776(+)$1	204	159	181	10.0204
CCACUAUCACGAAAAAAACUCU	chrM:10993-11219(+)$1	226	28	50	10.0204
AUUUCUCAUUACUAACAACAUU	chrM:13566-13772(+)$1	206	165	187	10.0204

#DB
......................	chrM:13585-13790(+)$1	1	146	168	10.0204
......................	chr6:87968240-87968540(+)$1	1	256	278	10.0204
......................	chrM:10023-10247(+)$1	1	39	61	10.0204
......................	chrM:8346-8594(+)$1	1	76	98	10.0204
......................	chrM:8601-8810(+)$1	1	0	22	10.0204
......................	chrM:7650-7856(+)$1	1	157	179	10.0204
......................	chrM:5241-5508(+)$1	1	77	99	10.0204
......................	chrM:13610-13817(+)$1	1	151	173	10.0204
......................	chr10:860347-860666(-)$1	1	139	161	10.0204
......................	chrM:10837-11051(+)$1	1	87	109	10.0204
......................	chrM:9978-10223(+)$1	1	82	104	10.0204
......................	chrM:11030-11234(+)$1	1	0	22	10.0204
......................	chrM:7576-7832(+)$1	1	131	153	10.0204
......................	chrM:14702-14952(+)$1	1	101	123	10.0204
......................	chrM:15721-15968(+)$1	1	87	109	10.0204
......................	chrM:13697-13907(+)$1	1	75	97	10.0204
......................	chrM:12288-12494(+)$1	1	62	84	10.0204
......................	chrM:13041-13255(+)$1	1	13	35	10.0204
......................	chrM:13617-13832(+)$1	1	147	169	10.0204
......................	chrM:10967-11185(+)$1	1	0	22	10.0204
......................	chrM:10852-11063(+)$1	1	0	22	10.0204
......................	chrM:13650-13862(+)$1	1	0	22	10.0204
......................	chrM:5007-5276(+)$1	1	96	118	10.0204
......................	chrM:13576-13779(+)$1	1	155	177	10.0204
......................	chrM:8561-8765(+)$1	1	66	88	10.0204
......................	chrM:8596-8798(+)$1	1	0	22	10.0204
......................	chrM:12282-12488(+)$1	1	68	90	10.0204
......................	chrM:8559-8761(+)$1	1	68	90	10.0204
......................	chrM:9294-9543(+)$1	1	217	239	10.0204
......................	chrM:8556-8759(+)$1	1	71	93	10.0204
......................	chrM:8318-8546(+)$1	1	25	47	10.0204
......................	chrM:9228-9463(+)$1	1	118	140	10.0204
......................	chrM:13510-13763(+)$1	1	23	45	10.0204
......................	chrM:13579-13785(+)$1	1	152	174	10.0204
......................	chrM:7674-7880(+)$1	1	133	155	10.0204
......................	chrM:13604-13810(+)$1	1	126	148	10.0204
......................	chrM:11024-11230(+)$1	1	0	22	10.0204
......................	chrM:8610-8813(+)$1	1	0	22	10.0204
......................	chrM:13644-13850(+)$1	1	0	22	10.0204
......................	chrM:13725-13959(+)$1	1	119	141	10.0204
......................	chrM:4602-4857(+)$1	1	0	22	10.0204
......................	chrM:10175-10422(+)$1	1	89	111	10.0204
......................	chr22:26931871-26932191(-)$1	1	185	207	10.0204
......................	chrM:13707-13918(+)$1	1	65	87	10.0204
......................	chrM:9197-9428(+)$1	1	0	22	10.0204
......................	chrM:10986-11193(+)$1	1	33	55	10.0204
......................	chrM:9143-9371(+)$1	1	0	22	10.0204
......................	chrM:12607-12827(+)$1	1	64	86	10.0204
......................	chrM:8598-8801(+)$1	1	0	22	10.0204
......................	chrM:10863-11072(+)$1	1	0	22	10.0204
......................	chrM:12302-12530(+)$1	1	48	70	10.0204
......................	chrM:8613-8839(+)$1	1	0	22	10.0204
......................	chr5:34813486-34813804(+)$1	1	134	156	10.0204
......................	chrM:10873-11115(+)$1	1	0	22	10.0204
......................	chrM:13718-13925(+)$1	1	126	148	10.0204
......................	chrM:13664-13897(+)$1	1	0	22	10.0204
......................	chrM:5076-5283(+)$1	1	0	22	10.0204
......................	chr3:65361510-65361830(-)$1	1	113	135	10.0204
......................	chrM:7712-7935(+)$1	1	0	22	10.0204
......................	chrM:12294-12498(+)$1	1	81	103	10.0204
......................	chrM:11019-11224(+)$1	1	0	22	10.0204
......................	chrM:13590-13795(+)$1	1	140	162	10.0204
......................	chrM:10934-11156(+)$1	1	0	22	10.0204
......................	chr12:56558156-56558465(-)$1	1	68	90	10.0204
......................	chrM:13572-13776(+)$1	1	159	181	10.0204
......................	chrM:10993-11219(+)$1	1	28	50	10.0204
......................	chrM:13566-13772(+)$1	1	165	187	10.0204

#PSSM
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	

#score	671.3731358817997
#seq	67
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_UTR_m3_run1.txt

#BEAR
[a[eeeeepppppppeeeee]ab	chr3:41241627-41241872(+)$1	245	86	109	14.9886
eeee!!bbpppppppbb22eeee	chr13:25916443-25916727(+)$1	284	186	209	15.1018
eeeeecccpppppppccc333ee	chr19:12475681-12476001(-)$1	320	160	183	15.6627
:gggggggpppppppggggggg:	chr10:43904409-43904647(-)$1	238	72	95	15.0686
bb[eeeeepppppppeeeee]bb	chr1:153930822-153931101(-)$1	279	141	164	14.1794
bb!!ddddpppppppdddd]bb:	chr6:111136402-111136695(-)$1	293	67	90	13.0117
:gggggggpppppppggggggg:	chr12:53854788-53855005(+)$1	217	29	52	15.0686
!ccc!!bbpppppppbb22cccc	chr7:104753062-104753345(-)$1	283	123	146	16.0559
eee[a[bbpppppppbb]a]eee	chr11:64511565-64511827(-)$1	262	120	143	15.1053
!ccc[cccpppppppccc]ccc2	chr14:104164704-104164945(+)$1	241	113	136	16.3749
"""eeeeepppppppeeeee]ee	chr6:35800646-35800890(-)$1	244	37	60	14.9471
gggggcccpppppppccccccnn	chr18:3450128-3450389(+)$1	261	218	241	14.7876
$$$$$cccpppppppccc333dd	chr2:20549860-20550127(-)$1	267	142	165	15.0786
:gggggggpppppppggggggg:	chr1:1050309-1050555(-)$1	246	169	192	15.0686
ggggg!!apppppppa22ggggg	chr4:83345602-83345890(-)$1	288	189	212	16.0214
b[a!!cccpppppppccc22a]b	chr17:43225822-43226100(+)$1	278	135	158	15.6938
Cgggggggpppppppggggggg:	chr19:15442988-15443264(-)$1	276	33	56	14.8864
cca!!cccpppppppccc22a]c	chr5:114880171-114880445(-)$1	274	10	33	16.0224
[gggggggpppppppggggggg]	chr15:80214928-80215230(-)$1	302	198	221	16.5714
[dddd[bbpppppppbb]dddd3	chr16:67596152-67596441(-)$1	289	119	142	14.8785
Bgggggggpppppppggggggg:	chr7:139107844-139108127(+)$1	283	144	167	15.1232
dd[bb[bbpppppppbb]bbddd	chr12:113826842-113827091(+)$1	249	30	53	13.7292
dddd"""apppppppa22dddd5	chr5:138629421-138629702(+)$1	281	128	151	13.7253
[dddd!!apppppppa22dddd]	chr11:66010842-66011123(+)$1	281	15	38	14.6264
fffff!!apppppppa22fffff	chr22:22901323-22901604(-)$1	281	49	72	14.3171
d[ccc[bbpppppppbb]ccc33	chr7:924782-925028(+)$1	246	134	157	15.7020
!ccc[cccpppppppccc]ccc2	chr12:56632195-56632450(-)$1	255	31	54	16.3749
[gggggggpppppppgggggggb	chr22:38691946-38692316(-)$1	370	123	146	16.3287
!eeeeebbpppppppbb333eee	chr12:53846030-53846262(+)$1	232	20	43	15.5090
ccc[a[bbpppppppbb]a]ccc	chr2:191513794-191514064(+)$1	270	121	144	15.8587
gggg!!bbpppppppbb333ggg	chr4:83275002-83275227(-)$1	225	75	98	16.5819
iiiiiiiipppppppiiiiiiii	chr2:223726343-223726660(+)$1	317	271	294	16.2010
ccc[ddddpppppppdddd333c	chr7:2294058-2294324(-)$1	266	179	202	14.7957
gccc[cccpppppppccc]ccc2	chrX:41209359-41209693(+)$1	334	136	159	16.1781
[a[eeeeepppppppeeeee]a]	chr1:151031553-151031819(-)$1	266	161	184	15.2313
iiiiiiiipppppppiiiiiiii	chr17:18834398-18834678(+)$1	280	147	170	16.2010
ccc"""bbpppppppbb333ccc	chr5:179921497-179921766(+)$1	269	3	26	16.1850
"""eeeeepppppppeeeee444	chr19:18547920-18548209(-)$1	289	186	209	15.0265
c[ffffffpppppppffffffcc	chr3:14989073-14989335(-)$1	262	153	176	14.3642
:gggggggpppppppgggggggA	chr2:242707712-242708023(+)$1	311	173	196	14.9964
cc[a[cccpppppppccc]accc	chr7:925093-925359(+)$1	266	17	40	16.2930
:gggggggpppppppggggggg:	chr7:100027492-100027763(+)$1	271	85	108	15.0686
eeeeecccpppppppccc]eeee	chr14:104163785-104164050(+)$1	265	85	108	15.2649
ee[cccbbpppppppbb]ccc]e	chr20:62331700-62331959(-)$1	259	192	215	15.3426
gggg[cccpppppppcccggggg	chr20:62338554-62338786(-)$1	232	132	155	16.4496
iiiiiiiipppppppiiiiiiii	chr17:56080703-56080923(-)$1	220	40	63	16.2010
cc[ddddapppppppa]dddd]c	chr2:28974741-28974996(+)$1	255	50	73	14.6998
:ccc[cccpppppppccc]ccc:	chr4:433586-433880(-)$1	294	214	237	14.9766
cc[eeeeepppppppeeeee]cc	chr19:51322349-51322604(-)$1	255	85	108	15.1865
iiiiiiiipppppppiiiiiiii	chr12:7037359-7037628(+)$1	269	51	74	16.2010
$gggggggpppppppggggggg8	chr12:53854760-53854979(+)$1	219	57	80	15.9797
ggggggrrrrrrrrrggggggg2	chr7:923925-924184(+)$1	259	158	181	11.6170
fff"""bbpppppppbb4444ff	chr2:172379606-172379895(+)$1	289	110	133	14.8837
!ccc[cccpppppppcccccc]e	chr19:7978476-7978738(+)$1	262	229	252	16.1582
:gggggggpppppppgggggggI	chr17:56167545-56167813(+)$1	268	196	219	14.5200
[gggggggpppppppggggggg]	chr7:1887346-1887624(-)$1	278	240	263	16.5714
"""eeeeepppppppeeeee]ee	chr19:2426305-2426559(-)$1	254	65	88	14.9471
eaaeeeeepppppppeeeee333	chr20:62330174-62330439(-)$1	265	123	146	14.9185
ccc!!cccpppppppccc22ccc	chr11:126146108-126146400(+)$1	292	52	75	16.1727
=====:bbpppppppbb:eeeee	chr1:245026240-245026516(-)$1	276	204	227	13.5210
d[dddd[apppppppaddddddd	chr16:89787334-89787642(+)$1	308	36	59	13.9914

#otherMatches

#Seq PSSM
UGUUAUUAUUUUUUUUAAUGCCC	chr3:41241627-41241872(+)$1	245	86	109	14.9886
UAUAUUCCCUUCAUUGGUUUAUA	chr13:25916443-25916727(+)$1	284	186	209	15.1018
gggaggugaagaaaccgcauucu	chr19:12475681-12476001(-)$1	320	160	183	15.6627
GGGUUCGGGGGGCCACCGAAUCG	chr10:43904409-43904647(-)$1	238	72	95	15.0686
GGGCGAACGGGCCUGGUUCGGCC	chr1:153930822-153931101(-)$1	279	141	164	14.1794
CAGGUUCCAAAACAAGGAAAUGA	chr6:111136402-111136695(-)$1	293	67	90	13.0117
AGGUGGCAGGGGAUAUGCUACCC	chr12:53854788-53855005(+)$1	217	29	52	15.0686
AGCAGUUUGAGAAUGAAUAUGCG	chr7:104753062-104753345(-)$1	283	123	146	16.0559
CCUGCACCGCAAAUGGGAGGGGG	chr11:64511565-64511827(-)$1	262	120	143	15.1053
AGGGAGUCACUGUAGGACACCCC	chr14:104164704-104164945(+)$1	241	113	136	16.3749
UCUUUGUAAAUGCCGUACAAUAA	chr6:35800646-35800890(-)$1	244	37	60	14.9471
UGUUUAGCAAUAACGGCUGGAGC	chr18:3450128-3450389(+)$1	261	218	241	14.7876
GAGAAGCAUGCGGAUUGCAAGUG	chr2:20549860-20550127(-)$1	267	142	165	15.0786
acaggugguguuugguuacuugg	chr1:1050309-1050555(-)$1	246	169	192	15.0686
UUGUAGAGUAUUGGUCCAUACAG	chr4:83345602-83345890(-)$1	288	189	212	16.0214
gagaaCUGAGCAGAGCAGAGCAU	chr17:43225822-43226100(+)$1	278	135	158	15.6938
ccgcgggcgagcgcggccuguga	chr19:15442988-15443264(-)$1	276	33	56	14.8864
UCCGAGCCGACUAAGGGCGGGAG	chr5:114880171-114880445(-)$1	274	10	33	16.0224
CGGUUGGUGUUUGGGAUCAAUUU	chr15:80214928-80215230(-)$1	302	198	221	16.5714
AGGGCAGCAUGGGAGGCGGCCCC	chr16:67596152-67596441(-)$1	289	119	142	14.8785
AGUGCCUUACUGUGCAAGGCACC	chr7:139107844-139108127(+)$1	283	144	167	15.1232
UCUGGGCGUUGUCUUCGGCUGGC	chr12:113826842-113827091(+)$1	249	30	53	13.7292
GCCGGGAGGGGACAACGACGGCG	chr5:138629421-138629702(+)$1	281	128	151	13.7253
AGGGUCUGCCUCUCACUCGCCCA	chr11:66010842-66011123(+)$1	281	15	38	14.6264
CCCUGAAUGUAGGGAAAGCAGGG	chr22:22901323-22901604(-)$1	281	49	72	14.3171
GCGCAUCCAAGCAGAGGCUGCCU	chr7:924782-925028(+)$1	246	134	157	15.7020
UGGGAAGGGAGGGUGCCUACUCU	chr12:56632195-56632450(-)$1	255	31	54	16.3749
CGUCCUAUGGGUUGGAUGGGACC	chr22:38691946-38692316(-)$1	370	123	146	16.3287
CGCGGGGccccccucgccuuccc	chr12:53846030-53846262(+)$1	232	20	43	15.5090
GGGGGAGCAGAGAGAGCGCGCCC	chr2:191513794-191514064(+)$1	270	121	144	15.8587
AAAUUUGCUUUCAUUGUUUUAUU	chr4:83275002-83275227(-)$1	225	75	98	16.5819
GGACUGCUUACUACcagcagucc	chr2:223726343-223726660(+)$1	317	271	294	16.2010
CCCUGGUCUGGGAGUGGCCUGUG	chr7:2294058-2294324(-)$1	266	179	202	14.7957
GAGGUGUAAAUAAAGUGCUCUUG	chrX:41209359-41209693(+)$1	334	136	159	16.1781
GAGAACUUCUAGGUAGAGUUGUG	chr1:151031553-151031819(-)$1	266	161	184	15.2313
CGUUUUAUAACUAAAAUAAAAUG	chr17:18834398-18834678(+)$1	280	147	170	16.2010
gGCGCAGCGAGGAGGGCGAGGCC	chr5:179921497-179921766(+)$1	269	3	26	16.1850
AAAUGCCCGAAAGUGGGGCGGGG	chr19:18547920-18548209(-)$1	289	186	209	15.0265
UGUUAUUGUUUUUGUCAGUGAAA	chr3:14989073-14989335(-)$1	262	153	176	14.3642
GCGGCUCUGCUGAAUGGAGCCGG	chr2:242707712-242708023(+)$1	311	173	196	14.9964
CGGUGCUCUGGGAGUGGGGACGU	chr7:925093-925359(+)$1	266	17	40	16.2930
GCAGGGGGGGUUAGGCCCCCUGA	chr7:100027492-100027763(+)$1	271	85	108	15.0686
ggaguugugaggagaacauacuu	chr14:104163785-104164050(+)$1	265	85	108	15.2649
UGGUCCCCUGGUGCUGGAGGAGU	chr20:62331700-62331959(-)$1	259	192	215	15.3426
AUUGCUGUGAGCAGGACACAGUG	chr20:62338554-62338786(-)$1	232	132	155	16.4496
UUGAAAAAAUAAACAUUUUUUAA	chr17:56080703-56080923(-)$1	220	40	63	16.2010
UGGGUGCCUCCGAGUGUGCGCGC	chr2:28974741-28974996(+)$1	255	50	73	14.6998
UGAAUGACAUCUCUAGUCUUUUU	chr4:433586-433880(-)$1	294	214	237	14.9766
GCCUUCUGUCGCCGUCAGAGUGC	chr19:51322349-51322604(-)$1	255	85	108	15.1865
gccgccgccgUCGUCGCGGCGGC	chr12:7037359-7037628(+)$1	269	51	74	16.2010
AGGUGGCAGGGGAUAUGCUACCC	chr12:53854760-53854979(+)$1	219	57	80	15.9797
GCCUGCCAACGGCCUGCAGGCUG	chr7:923925-924184(+)$1	259	158	181	11.6170
CCUUUUGCUGAACUUGCUUCCAG	chr2:172379606-172379895(+)$1	289	110	133	14.8837
AGGCGCAGAAGCCGGCUGGCCGU	chr19:7978476-7978738(+)$1	262	229	252	16.1582
UCUGUUUUGAAAAUAAAGAUAGG	chr17:56167545-56167813(+)$1	268	196	219	14.5200
CGUGUCCCGGGCCCAGGGACGCC	chr7:1887346-1887624(-)$1	278	240	263	16.5714
CUCGGAGGGUCUCAGCCUCCCCU	chr19:2426305-2426559(-)$1	254	65	88	14.9471
GCCCCGGCGACUAGGGCUGGCCU	chr20:62330174-62330439(-)$1	265	123	146	14.9185
AUGACAUCGAAGUUGGAUAGCgu	chr11:126146108-126146400(+)$1	292	52	75	16.1727
UCUCUUCGGGAUACACGUGGGCU	chr1:245026240-245026516(-)$1	276	204	227	13.5210
GACCGCAGGAAGGGACGCGGCCG	chr16:89787334-89787642(+)$1	308	36	59	13.9914

#DB
.(.(((((.......))))).))	chr3:41241627-41241872(+)$1	1	86	109	14.9886
((((..((.......))..))))	chr13:25916443-25916727(+)$1	1	186	209	15.1018
((((((((.......)))...))	chr19:12475681-12476001(-)$1	1	160	183	15.6627
.(((((((.......))))))).	chr10:43904409-43904647(-)$1	1	72	95	15.0686
((.(((((.......))))).))	chr1:153930822-153931101(-)$1	1	141	164	14.1794
((..((((.......)))).)).	chr6:111136402-111136695(-)$1	1	67	90	13.0117
.(((((((.......))))))).	chr12:53854788-53855005(+)$1	1	29	52	15.0686
.(((..((.......))..))))	chr7:104753062-104753345(-)$1	1	123	146	16.0559
(((.(.((.......)).).)))	chr11:64511565-64511827(-)$1	1	120	143	15.1053
.(((.(((.......))).))).	chr14:104164704-104164945(+)$1	1	113	136	16.3749
...(((((.......))))).))	chr6:35800646-35800890(-)$1	1	37	60	14.9471
)))))(((.......)))(((..	chr18:3450128-3450389(+)$1	1	218	241	14.7876
.....(((.......)))...))	chr2:20549860-20550127(-)$1	1	142	165	15.0786
.(((((((.......))))))).	chr1:1050309-1050555(-)$1	1	169	192	15.0686
(((((..(.......)..)))))	chr4:83345602-83345890(-)$1	1	189	212	16.0214
(.(..(((.......)))..).)	chr17:43225822-43226100(+)$1	1	135	158	15.6938
((((((((.......))))))).	chr19:15442988-15443264(-)$1	1	33	56	14.8864
(((..(((.......)))..).)	chr5:114880171-114880445(-)$1	1	10	33	16.0224
.(((((((.......))))))).	chr15:80214928-80215230(-)$1	1	198	221	16.5714
.((((.((.......)).)))).	chr16:67596152-67596441(-)$1	1	119	142	14.8785
((((((((.......))))))).	chr7:139107844-139108127(+)$1	1	144	167	15.1232
((.((.((.......)).)))))	chr12:113826842-113827091(+)$1	1	30	53	13.7292
((((...(.......)..)))).	chr5:138629421-138629702(+)$1	1	128	151	13.7253
.((((..(.......)..)))).	chr11:66010842-66011123(+)$1	1	15	38	14.6264
(((((..(.......)..)))))	chr22:22901323-22901604(-)$1	1	49	72	14.3171
(.(((.((.......)).)))..	chr7:924782-925028(+)$1	1	134	157	15.7020
.(((.(((.......))).))).	chr12:56632195-56632450(-)$1	1	31	54	16.3749
.(((((((.......))))))))	chr22:38691946-38692316(-)$1	1	123	146	16.3287
.(((((((.......))...)))	chr12:53846030-53846262(+)$1	1	20	43	15.5090
(((.(.((.......)).).)))	chr2:191513794-191514064(+)$1	1	121	144	15.8587
((((..((.......))...)))	chr4:83275002-83275227(-)$1	1	75	98	16.5819
((((((((.......))))))))	chr2:223726343-223726660(+)$1	1	271	294	16.2010
(((.((((.......))))...)	chr7:2294058-2294324(-)$1	1	179	202	14.7957
((((.(((.......))).))).	chrX:41209359-41209693(+)$1	1	136	159	16.1781
.(.(((((.......))))).).	chr1:151031553-151031819(-)$1	1	161	184	15.2313
((((((((.......))))))))	chr17:18834398-18834678(+)$1	1	147	170	16.2010
(((...((.......))...)))	chr5:179921497-179921766(+)$1	1	3	26	16.1850
...(((((.......)))))...	chr19:18547920-18548209(-)$1	1	186	209	15.0265
(.((((((.......))))))))	chr3:14989073-14989335(-)$1	1	153	176	14.3642
.(((((((.......))))))))	chr2:242707712-242708023(+)$1	1	173	196	14.9964
((.(.(((.......))).))))	chr7:925093-925359(+)$1	1	17	40	16.2930
.(((((((.......))))))).	chr7:100027492-100027763(+)$1	1	85	108	15.0686
((((((((.......))).))))	chr14:104163785-104164050(+)$1	1	85	108	15.2649
((.(((((.......)).))).)	chr20:62331700-62331959(-)$1	1	192	215	15.3426
((((.(((.......))))))))	chr20:62338554-62338786(-)$1	1	132	155	16.4496
((((((((.......))))))))	chr17:56080703-56080923(-)$1	1	40	63	16.2010
((.(((((.......).)))).)	chr2:28974741-28974996(+)$1	1	50	73	14.6998
.(((.(((.......))).))).	chr4:433586-433880(-)$1	1	214	237	14.9766
((.(((((.......))))).))	chr19:51322349-51322604(-)$1	1	85	108	15.1865
((((((((.......))))))))	chr12:7037359-7037628(+)$1	1	51	74	16.2010
.(((((((.......))))))).	chr12:53854760-53854979(+)$1	1	57	80	15.9797
((((((.........))))))).	chr7:923925-924184(+)$1	1	158	181	11.6170
(((...((.......))....))	chr2:172379606-172379895(+)$1	1	110	133	14.8837
.(((.(((.......)))))).)	chr19:7978476-7978738(+)$1	1	229	252	16.1582
.(((((((.......))))))))	chr17:56167545-56167813(+)$1	1	196	219	14.5200
.(((((((.......))))))).	chr7:1887346-1887624(-)$1	1	240	263	16.5714
...(((((.......))))).))	chr19:2426305-2426559(-)$1	1	65	88	14.9471
((((((((.......)))))...	chr20:62330174-62330439(-)$1	1	123	146	14.9185
(((..(((.......)))..)))	chr11:126146108-126146400(+)$1	1	52	75	16.1727
))))).((.......)).(((((	chr1:245026240-245026516(-)$1	1	204	227	13.5210
(.((((.(.......))))))))	chr16:89787334-89787642(+)$1	1	36	59	13.9914

#PSSM
c : 0.14	[ : 0.11	: : 0.11	e : 0.09	g : 0.09	! : 0.08	d : 0.06	i : 0.06	b : 0.04	" : 0.04	$ : 0.03	f : 0.03	C : 0.01	B : 0.01	= : 0.01	
g : 0.27	c : 0.22	e : 0.09	[ : 0.06	d : 0.06	i : 0.06	a : 0.04	" : 0.04	b : 0.03	f : 0.03	$ : 0.01	= : 0.01	
g : 0.27	c : 0.18	[ : 0.13	e : 0.08	d : 0.06	i : 0.06	" : 0.04	a : 0.04	f : 0.04	! : 0.01	$ : 0.01	= : 0.01	
g : 0.27	e : 0.19	c : 0.13	d : 0.08	! : 0.06	i : 0.06	[ : 0.04	f : 0.03	" : 0.03	$ : 0.01	b : 0.01	a : 0.01	= : 0.01	
g : 0.24	e : 0.18	[ : 0.11	! : 0.09	d : 0.09	i : 0.06	" : 0.04	a : 0.03	f : 0.03	c : 0.03	$ : 0.01	b : 0.01	= : 0.01	
c : 0.24	g : 0.21	e : 0.14	! : 0.09	[ : 0.08	d : 0.06	i : 0.06	" : 0.04	f : 0.01	: : 0.01	
c : 0.22	b : 0.21	g : 0.19	e : 0.13	i : 0.06	d : 0.04	! : 0.04	" : 0.01	f : 0.01	r : 0.01	[ : 0.01	
c : 0.22	b : 0.21	g : 0.19	e : 0.13	a : 0.09	i : 0.06	d : 0.03	f : 0.01	r : 0.01	
p : 0.98	r : 0.01	
p : 0.98	r : 0.01	
p : 0.98	r : 0.01	
p : 0.98	r : 0.01	
p : 0.98	r : 0.01	
p : 0.98	r : 0.01	
p : 0.98	r : 0.01	
c : 0.22	b : 0.21	g : 0.21	e : 0.13	a : 0.09	i : 0.06	d : 0.03	f : 0.01	
c : 0.22	b : 0.21	g : 0.21	e : 0.13	2 : 0.06	i : 0.06	d : 0.04	f : 0.01	] : 0.01	
c : 0.22	g : 0.21	e : 0.13	2 : 0.09	] : 0.09	d : 0.06	i : 0.06	3 : 0.04	f : 0.01	4 : 0.01	: : 0.01	
g : 0.24	e : 0.14	d : 0.11	] : 0.09	2 : 0.08	3 : 0.08	c : 0.06	i : 0.06	a : 0.03	f : 0.03	b : 0.01	4 : 0.01	
g : 0.24	e : 0.18	c : 0.14	3 : 0.09	d : 0.08	i : 0.06	] : 0.04	2 : 0.04	f : 0.03	b : 0.01	a : 0.01	4 : 0.01	
g : 0.26	c : 0.21	] : 0.09	d : 0.09	e : 0.08	3 : 0.06	i : 0.06	a : 0.03	f : 0.03	4 : 0.03	b : 0.01	
g : 0.26	c : 0.18	e : 0.13	d : 0.09	] : 0.08	i : 0.06	3 : 0.04	a : 0.03	b : 0.03	f : 0.03	n : 0.01	4 : 0.01	
e : 0.16	c : 0.16	: : 0.13	b : 0.06	2 : 0.06	] : 0.06	i : 0.06	d : 0.04	g : 0.04	3 : 0.04	f : 0.03	n : 0.01	5 : 0.01	4 : 0.01	A : 0.01	8 : 0.01	I : 0.01	

#score	930.5960005967544
#seq	61
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_UTR_m1_run1.txt

#BEAR
[a[bb"""bbyyyyyyyyyyyyyyyybb333b	chr9:100777604-100777858(+)$1	254	86	118	22.1813
:ccc[a[ccctttttttttttccc]a]ccc::	chr14:102550989-102551204(-)$1	215	65	97	20.9992
d[a!!a[bbwwwwwwwwwwwwwwbb]a22a]d	chr9:127620082-127620307(-)$1	225	107	139	23.6044
eeeee[cccxxxxxxxxxxxxxxxccc22eee	chr9:134342850-134343123(+)$1	273	92	124	19.4609
[ccc[bb[bbtttttttttttbb]bb22ccc]	chr3:23960676-23961017(+)$1	341	69	101	21.7023
##bb[eeeeettttttttttteeeee]bb333	chr21:35275738-35276010(-)$1	272	216	248	21.0585
ccc####cccuuuuuuuuuuuuccc7777777	chr19:10260507-10260743(-)$1	236	33	65	22.3857
b[a[eeeeeuuuuuuuuuuuueeeee22a]bb	chr17:37008844-37009086(-)$1	242	18	50	22.0664
fff[bbwwwwwwwwwwwwwwbb]ffffff333	chr11:290480-290726(+)$1	246	183	215	19.1105
hhhhh"""bbvvvvvvvvvvvvvbb333hhhh	chr16:89953999-89954224(+)$1	225	159	191	22.0861
ddd"""ddddwwwwwwwwwwwwwwdddddddd	chr6:33243481-33243707(+)$1	226	118	150	22.3748
ddd"""ddddwwwwwwwwwwwwwwdddddddd	chr6:33243507-33243760(+)$1	253	92	124	22.3748
ggg!!a[cccvvvvvvvvvvvvvccc]a22gg	chr5:133493336-133493559(-)$1	223	94	126	25.0093
ffffff[cccyyyyyyyyyyyyyyyyccc]ff	chr12:49233531-49233793(-)$1	262	195	227	21.9721
ggg!!eeeee^^^^^^^^^^^^^^^^^^^^ee	chrX:154011592-154011848(-)$1	256	208	240	18.4501
[gggggggwwwwwwwwwwwwwwgggggggccc	chr16:85840270-85840639(+)$1	369	35	67	22.3324
ddd[bb[ccctttttttttttcccbbdddd]b	chr11:61734808-61735021(-)$1	213	121	153	22.8226
eee[bb!!bbvvvvvvvvvvvvvbb22bb]ee	chr2:121047106-121047434(+)$1	328	95	127	22.7318
cdddd!!avvvvvvvvvvvvva22dddd]ccc	chr1:70716283-70716628(+)$1	345	173	205	22.2137
[eeeee[cccwwwwwwwwwwwwwwccc22eee	chr8:117738155-117738512(-)$1	357	309	341	22.9582
cccffffffwwwwwwwwwwwwwwffffff]cc	chr2:232577059-232577321(+)$1	262	83	115	21.8287
cccffffffuuuuuuuuuuuuffffff22ccc	chr20:57019032-57019321(+)$1	289	91	123	22.0618
ddd[a^^^^^^^^^^^^^^^^^^^^^^^^^^a	chr5:140032553-140032832(+)$1	279	20	52	19.1357
iiiiiii[avvvvvvvvvvvvvaiiiiiiiii	chr2:172582093-172582324(+)$1	231	140	172	23.4650
d!!dddd[bbtttttttttttbb]dddd5555	chr18:158456-158718(+)$1	262	13	45	18.9110
eee[a[ddddyyyyyyyyyyyyyyyydddd]a	chr2:197657578-197657852(-)$1	274	23	55	22.1424
ccc[bb^^^^^^^^^^^^^^^^^^^^^^^^bb	chrX:64737886-64738196(-)$1	310	89	121	18.6104
ddd[bb[ccctttttttttttcccbbdddd]b	chr11:61734821-61735034(-)$1	213	134	166	22.8226
ddd[fffffftttttttttttffffff4444d	chr17:27413441-27413695(-)$1	254	58	90	22.3653
#bb[ffffff^^^^^^^^^^^^^^^^^^^^ff	chr9:95033715-95034005(-)$1	290	37	69	17.6832
ddd"""ccc^^^^^^^^^^^^^^^^^^^^^^^	chr19:15376284-15376555(-)$1	271	119	151	19.6631
!bb[eeeeeuuuuuuuuuuuueeeeebb22bb	chr1:156104493-156104737(+)$1	244	104	136	21.4552
iiiiiiiwwwwwwwwwwwwwwiiiiiiiii]d	chr10:79799863-79800071(+)$1	208	30	62	21.2629
eeee!!ddddvvvvvvvvvvvvvdddd333ee	chr2:47388761-47389000(-)$1	239	159	191	23.4288
ddd[bb[ccctttttttttttcccbbdddd]b	chr11:61734834-61735042(-)$1	208	142	174	22.8226
[a[ccc[ccctttttttttttccc]ccc22a]	chr17:27419845-27420122(-)$1	277	140	172	23.3513
###gggggggtttttttttttggggggg22ii	chr19:46190699-46190950(-)$1	251	200	232	21.7245
dd####ddddtttttttttttdddd22dddd2	chr9:127620155-127620384(-)$1	229	31	63	21.4430
dd!!ffffff^^^^^^^^^^^^^^^^^^^^^^	chr8:146016570-146016866(-)$1	296	89	121	18.4275
!ddddbb[bbtttttttttttbb]bb]dddd4	chr6:36568827-36569064(+)$1	237	44	76	21.0799
[dddda[cccuuuuuuuuuuuuccc]a]dddd	chr3:53260715-53260983(-)$1	268	70	102	23.9307
ddd!!ddddvvvvvvvvvvvvvdddd22dddd	chr19:8532320-8532564(+)$1	244	124	156	22.9109
ffffff!!bbuuuuuuuuuuuubb22ffffff	chr12:14944010-14944299(-)$1	289	195	227	21.4336
eedddd[cccuuuuuuuuuuuuccc333dddd	chrX:153627743-153628032(+)$1	289	246	278	24.0242
!!ggggggguuuuuuuuuuuuggggggg]a22	chr11:129992252-129992501(+)$1	249	29	61	22.6109
:bbccc[ccctttttttttttccc]ccc22bb	chr5:132203145-132203452(+)$1	307	104	136	21.4851
hhh[ccccccwwwwwwwwwwwwwwccc]ccc]	chr19:8531024-8531362(+)$1	338	35	67	23.0618
eee!!ccc^^^^^^^^^^^^^^^^^^^^^^cc	chr12:21791186-21791437(-)$1	251	4	36	19.4773
ggggbbdddduuuuuuuuuuuudddd]bb]gg	chr2:85133473-85133718(+)$1	245	22	54	22.1694
bb"""eeeeettttttttttteeeee333bb2	chr12:123466191-123466508(+)$1	317	189	221	21.5301
dddd[cccyyyyyyyyyyyyyyyyccc]dddd	chr3:142773681-142774028(+)$1	347	191	223	22.5037
ff"""cccvvvvvvvvvvvvvccc]ffffff:	chr17:27416878-27417193(-)$1	315	71	103	21.5442
gggggggwwwwwwwwwwwwwwgggggggbb]g	chr12:53862460-53862714(+)$1	254	77	109	20.8225
eee!!eeeee^^^^^^^^^^^^^^^^^^^^^^	chr7:22852614-22852882(-)$1	268	53	85	18.5087

#otherMatches

#Seq PSSM
augaugaaggagaagaugauuaagaCCCCAGA	chr9:100777604-100777858(+)$1	254	86	118	22.1813
AAGAAGAGCUCAACAAAACAAAGCCCAUCUGG	chr14:102550989-102551204(-)$1	215	65	97	20.9992
CUGAGGGGCGCAUUGUCAAUAAAGCACAGCUG	chr9:127620082-127620307(-)$1	225	107	139	23.6044
UCUCUAGGCUCCCCAGAAUUCCCUGCCCAAGA	chr9:134342850-134343123(+)$1	273	92	124	19.4609
AGAUUCCACAUACAAAUUUUUUGAGGUUAUCC	chr3:23960676-23961017(+)$1	341	69	101	21.7023
AACUUGGAGCAACAAUAAAAAGCUUCCAGAAC	chr21:35275738-35276010(-)$1	272	216	248	21.0585
CAUGCAAGUCAAGGCCAGCAAAGACCCUCAGA	chr19:10260507-10260743(-)$1	236	33	65	22.3857
UGGAAGUGUUUGGGAAAUGUUAUACUGAUGGA	chr17:37008844-37009086(-)$1	242	18	50	22.0664
CCACGCUCUCACAGGUACCUGUAUGGCCACAC	chr11:290480-290726(+)$1	246	183	215	19.1105
GCUUCAUUCCUUCUUAGACUCUUGGCCGGGGG	chr16:89953999-89954224(+)$1	225	159	191	22.0861
GGUGUUGAGGAAAGCAGACAUUGACCUCACCA	chr6:33243481-33243707(+)$1	226	118	150	22.3748
GGUGUUGAGGAAAGCAGACAUUGACCUCACCA	chr6:33243507-33243760(+)$1	253	92	124	22.3748
UUUUAGGUACGCAAAGAGAACCAGUGGUGUGA	chr5:133493336-133493559(-)$1	223	94	126	25.0093
gcucaggcugccauaacacaauaccacagacu	chr12:49233531-49233793(-)$1	262	195	227	21.9721
AUACCAUAGUGuuauuuuauuauuuuuuaaau	chrX:154011592-154011848(-)$1	256	208	240	18.4501
UGAGAUAGUCUUGCCCCAUAACCUGUCUCACA	chr16:85840270-85840639(+)$1	369	35	67	22.3324
GCCAUGACGACCGCGUCCACCUCGCAGGUGCG	chr11:61734808-61735021(-)$1	213	121	153	22.8226
CUCGUCGUGGGAAACAAGUCUGACCUAGAGGA	chr2:121047106-121047434(+)$1	328	95	127	22.7318
AUCAUGAAGAAGACAUGGAUAUGAGUGACUGA	chr1:70716283-70716628(+)$1	345	173	205	22.2137
GACACAGGUCUCACCAUAACUUUUGAUAAUGU	chr8:117738155-117738512(-)$1	357	309	341	22.9582
UUCUCUCCAGGUGAGGAAGAGGAUGGAGAUGA	chr2:232577059-232577321(+)$1	262	83	115	21.8287
CUCCCGUAGGAAGAAGAUGGACUGCGGAUGAG	chr20:57019032-57019321(+)$1	289	91	123	22.0618
GCUACGCCAACAAGAAAUUGAGAGAGAGAGAG	chr5:140032553-140032832(+)$1	279	20	52	19.1357
GAAUUAAACUUUAAAACAUUUUGUUGAUUUCU	chr2:172582093-172582324(+)$1	231	140	172	23.4650
guccugccgcccagucuccucGCUGCAGUCGC	chr18:158456-158718(+)$1	262	13	45	18.9110
UCCAUGCUUGGAGAGAAUGAAGAUGAUgagga	chr2:197657578-197657852(-)$1	274	23	55	22.1424
GAUGUCAAGGAAGAGGAGAAGGAGGAGAAAGA	chrX:64737886-64738196(-)$1	310	89	121	18.6104
GCCAUGACGACCGCGUCCACCUCGCAGGUGCG	chr11:61734821-61735034(-)$1	213	134	166	22.8226
AAGCUAGCCCUCCUGCAAACUGGGCUGCCCCC	chr17:27413441-27413695(-)$1	254	58	90	22.3653
UUAUUCUUCCCUCUCUUUUGCCUUUUCUCAGG	chr9:95033715-95034005(-)$1	290	37	69	17.6832
UUUCCACGGUACCAAACACAACUCAAGCAUCG	chr19:15376284-15376555(-)$1	271	119	151	19.6631
GCUGCGUGAGACCAAGCGCCGUCAUGAGACCC	chr1:156104493-156104737(+)$1	244	104	136	21.4552
AAAGGGACUAUUAAUGAAAUCUUUCUUUUCCC	chr10:79799863-79800071(+)$1	208	30	62	21.2629
CCUCAUUCUUCACUUUGAUUUUUAAGAUAAGA	chr2:47388761-47389000(-)$1	239	159	191	23.4288
GCCAUGACGACCGCGUCCACCUCGCAGGUGCG	chr11:61734834-61735042(-)$1	208	142	174	22.8226
GGAAGGACCUGAAGCGCACCAAGGCCCUGCUG	chr17:27419845-27420122(-)$1	277	140	172	23.3513
GUUGAGAAUAAUAAAGCUCUGUGUUUUUUUCU	chr19:46190699-46190950(-)$1	251	200	232	21.7245
CUCCCAGGGCAAGAAGUACAAGCCCCUGGACC	chr9:127620155-127620384(-)$1	229	31	63	21.4430
GGCAUCAGGGAACUAUGCCACCGUUAUCUCCC	chr8:146016570-146016866(-)$1	296	89	121	18.4275
CCUCACGCCAUAAAUACUAAUUGAUGAUGAGC	chr6:36568827-36569064(+)$1	237	44	76	21.0799
CGUGUGCUCUCCCUCACAGAAAAGAUCAACAU	chr3:53260715-53260983(-)$1	268	70	102	23.9307
GAUAGACCAAUGCACGUCAAGAUGGUAAGUCA	chr19:8532320-8532564(+)$1	244	124	156	22.9109
AGGUGAGGCAGGGAAAAAAUAGUGAAUCACCU	chr12:14944010-14944299(-)$1	289	195	227	21.4336
ACCCCACCCACAUACACUGCACUGGAAUUGGG	chrX:153627743-153628032(+)$1	289	246	278	24.0242
gaagugguggaggaCCGAGAUUACUACUAUGA	chr11:129992252-129992501(+)$1	249	29	61	22.6109
AGCUGCCUAUGAAAAUGACAAAUGAGCAACGC	chr5:132203145-132203452(+)$1	307	104	136	21.4851
AAUGUUGUGUUUCUUAAGAUGUUUACAUUGAG	chr19:8531024-8531362(+)$1	338	35	67	23.0618
GCAAUGUCUUUUUUUUUUUUUUUAAACAGUGG	chr12:21791186-21791437(-)$1	251	4	36	19.4773
CUUCCCGCUCUCCACAGCCAUUGAGCAGGAGA	chr2:85133473-85133718(+)$1	245	22	54	22.1694
CUGGACCAGUGGCACCGAUCAGCUGGGGAGGA	chr12:123466191-123466508(+)$1	317	189	221	21.5301
GAGCGUUCAGAAAGAUCUCAUAAAGAGAGCUC	chr3:142773681-142774028(+)$1	347	191	223	22.5037
CUCUAGCUACAAGCCCUCCAGAGCCAGGUGGA	chr17:27416878-27417193(-)$1	315	71	103	21.5442
GCUUGCUCUCUUCUGUCUUUUAGCAGGUUUGG	chr12:53862460-53862714(+)$1	254	77	109	20.8225
UUUCUUCUCUUCACAAACAUUUUAGCCUACUU	chr7:22852614-22852882(-)$1	268	53	85	18.5087

#DB
.(.((...((................))...)	chr9:100777604-100777858(+)$1	1	86	118	22.1813
.(((.(.(((...........))).).)))..	chr14:102550989-102551204(-)$1	1	65	97	20.9992
(.(..(.((..............)).)..).)	chr9:127620082-127620307(-)$1	1	107	139	23.6044
(((((.(((...............)))..)))	chr9:134342850-134343123(+)$1	1	92	124	19.4609
.(((.((.((...........)).))..))).	chr3:23960676-23961017(+)$1	1	69	101	21.7023
..((.(((((...........))))).))...	chr21:35275738-35276010(-)$1	1	216	248	21.0585
(((....(((............))).......	chr19:10260507-10260743(-)$1	1	33	65	22.3857
(.(.(((((............)))))..).))	chr17:37008844-37009086(-)$1	1	18	50	22.0664
(((.((..............)).))))))...	chr11:290480-290726(+)$1	1	183	215	19.1105
(((((...((.............))...))))	chr16:89953999-89954224(+)$1	1	159	191	22.0861
(((...((((..............))))))))	chr6:33243481-33243707(+)$1	1	118	150	22.3748
(((...((((..............))))))))	chr6:33243507-33243760(+)$1	1	92	124	22.3748
(((..(.(((.............))).)..))	chr5:133493336-133493559(-)$1	1	94	126	25.0093
((((((.(((................))).))	chr12:49233531-49233793(-)$1	1	195	227	21.9721
(((..(((((....................))	chrX:154011592-154011848(-)$1	1	208	240	18.4501
.(((((((..............))))))))))	chr16:85840270-85840639(+)$1	1	35	67	22.3324
(((.((.(((...........))))))))).)	chr11:61734808-61735021(-)$1	1	121	153	22.8226
(((.((..((.............))..)).))	chr2:121047106-121047434(+)$1	1	95	127	22.7318
(((((..(.............)..)))).)))	chr1:70716283-70716628(+)$1	1	173	205	22.2137
.(((((.(((..............)))..)))	chr8:117738155-117738512(-)$1	1	309	341	22.9582
(((((((((..............)))))).))	chr2:232577059-232577321(+)$1	1	83	115	21.8287
(((((((((............))))))..)))	chr20:57019032-57019321(+)$1	1	91	123	22.0618
(((.(..........................)	chr5:140032553-140032832(+)$1	1	20	52	19.1357
(((((((.(.............))))))))))	chr2:172582093-172582324(+)$1	1	140	172	23.4650
(..((((.((...........)).))))....	chr18:158456-158718(+)$1	1	13	45	18.9110
(((.(.((((................)))).)	chr2:197657578-197657852(-)$1	1	23	55	22.1424
(((.((........................))	chrX:64737886-64738196(-)$1	1	89	121	18.6104
(((.((.(((...........))))))))).)	chr11:61734821-61735034(-)$1	1	134	166	22.8226
(((.((((((...........))))))....)	chr17:27413441-27413695(-)$1	1	58	90	22.3653
.((.((((((....................))	chr9:95033715-95034005(-)$1	1	37	69	17.6832
(((...(((.......................	chr19:15376284-15376555(-)$1	1	119	151	19.6631
.((.(((((............)))))))..))	chr1:156104493-156104737(+)$1	1	104	136	21.4552
(((((((..............))))))))).)	chr10:79799863-79800071(+)$1	1	30	62	21.2629
((((..((((.............))))...))	chr2:47388761-47389000(-)$1	1	159	191	23.4288
(((.((.(((...........))))))))).)	chr11:61734834-61735042(-)$1	1	142	174	22.8226
.(.(((.(((...........))).)))..).	chr17:27419845-27420122(-)$1	1	140	172	23.3513
...(((((((...........)))))))..))	chr19:46190699-46190950(-)$1	1	200	232	21.7245
((....((((...........))))..)))).	chr9:127620155-127620384(-)$1	1	31	63	21.4430
((..((((((......................	chr8:146016570-146016866(-)$1	1	89	121	18.4275
.((((((.((...........)).)).)))).	chr6:36568827-36569064(+)$1	1	44	76	21.0799
.(((((.(((............))).).))))	chr3:53260715-53260983(-)$1	1	70	102	23.9307
(((..((((.............))))..))))	chr19:8532320-8532564(+)$1	1	124	156	22.9109
((((((..((............))..))))))	chr12:14944010-14944299(-)$1	1	195	227	21.4336
((((((.(((............)))...))))	chrX:153627743-153628032(+)$1	1	246	278	24.0242
..(((((((............))))))).)..	chr11:129992252-129992501(+)$1	1	29	61	22.6109
.(((((.(((...........))).)))..))	chr5:132203145-132203452(+)$1	1	104	136	21.4851
(((.((((((..............))).))).	chr19:8531024-8531362(+)$1	1	35	67	23.0618
(((..(((......................))	chr12:21791186-21791437(-)$1	1	4	36	19.4773
((((((((((............)))).)).))	chr2:85133473-85133718(+)$1	1	22	54	22.1694
((...(((((...........)))))...)).	chr12:123466191-123466508(+)$1	1	189	221	21.5301
((((.(((................))).))))	chr3:142773681-142774028(+)$1	1	191	223	22.5037
((...(((.............))).)))))).	chr17:27416878-27417193(-)$1	1	71	103	21.5442
(((((((..............))))))))).)	chr12:53862460-53862714(+)$1	1	77	109	20.8225
(((..(((((......................	chr7:22852614-22852882(-)$1	1	53	85	18.5087

#PSSM
d : 0.25	e : 0.12	[ : 0.11	c : 0.09	f : 0.07	g : 0.07	# : 0.05	! : 0.05	: : 0.03	b : 0.03	h : 0.03	i : 0.03	
d : 0.27	e : 0.14	c : 0.11	g : 0.09	f : 0.07	b : 0.07	a : 0.03	[ : 0.03	# : 0.03	h : 0.03	i : 0.03	! : 0.03	
d : 0.25	e : 0.12	c : 0.11	g : 0.11	b : 0.07	f : 0.05	[ : 0.03	a : 0.03	h : 0.03	i : 0.03	! : 0.03	# : 0.03	" : 0.03	
[ : 0.24	! : 0.12	d : 0.11	" : 0.09	g : 0.09	c : 0.07	f : 0.07	e : 0.05	b : 0.03	# : 0.03	i : 0.03	h : 0.01	
b : 0.14	! : 0.12	f : 0.12	" : 0.09	d : 0.09	[ : 0.07	e : 0.07	g : 0.07	c : 0.05	# : 0.03	a : 0.03	i : 0.03	h : 0.01	
b : 0.16	e : 0.12	f : 0.12	c : 0.11	" : 0.09	a : 0.07	g : 0.07	d : 0.05	[ : 0.03	# : 0.03	! : 0.03	i : 0.03	^ : 0.01	
[ : 0.22	d : 0.14	c : 0.11	e : 0.11	f : 0.09	g : 0.07	! : 0.05	" : 0.03	b : 0.03	^ : 0.03	i : 0.03	# : 0.01	w : 0.01	
c : 0.33	d : 0.12	e : 0.11	f : 0.09	[ : 0.07	w : 0.05	g : 0.05	" : 0.03	! : 0.03	^ : 0.03	b : 0.01	a : 0.01	
c : 0.27	b : 0.14	d : 0.12	e : 0.11	f : 0.09	w : 0.07	^ : 0.05	v : 0.03	g : 0.03	a : 0.01	y : 0.01	
c : 0.24	b : 0.12	w : 0.11	d : 0.11	e : 0.07	u : 0.07	v : 0.07	^ : 0.07	f : 0.05	x : 0.01	g : 0.01	y : 0.01	
t : 0.25	w : 0.18	u : 0.16	v : 0.14	^ : 0.14	y : 0.07	x : 0.01	
t : 0.25	w : 0.18	u : 0.16	v : 0.14	^ : 0.14	y : 0.07	x : 0.01	
t : 0.25	w : 0.18	u : 0.16	v : 0.14	^ : 0.14	y : 0.07	x : 0.01	
t : 0.25	w : 0.18	u : 0.16	v : 0.14	^ : 0.14	y : 0.07	x : 0.01	
t : 0.25	w : 0.18	u : 0.16	v : 0.14	^ : 0.14	y : 0.07	x : 0.01	
t : 0.25	w : 0.18	u : 0.16	v : 0.14	^ : 0.14	y : 0.07	x : 0.01	
t : 0.25	w : 0.18	u : 0.16	v : 0.14	^ : 0.14	y : 0.07	x : 0.01	
t : 0.25	w : 0.18	u : 0.16	v : 0.14	^ : 0.14	y : 0.07	x : 0.01	
t : 0.25	w : 0.18	u : 0.16	v : 0.14	^ : 0.14	y : 0.07	x : 0.01	
t : 0.25	w : 0.18	u : 0.16	v : 0.14	^ : 0.14	y : 0.07	x : 0.01	
t : 0.25	w : 0.16	u : 0.16	v : 0.14	^ : 0.14	y : 0.07	x : 0.01	b : 0.01	
^ : 0.14	c : 0.12	w : 0.12	v : 0.11	u : 0.09	y : 0.07	b : 0.07	e : 0.07	g : 0.05	f : 0.03	x : 0.01	a : 0.01	i : 0.01	d : 0.01	
c : 0.18	^ : 0.14	w : 0.11	y : 0.07	b : 0.07	e : 0.07	v : 0.07	g : 0.07	d : 0.05	f : 0.03	x : 0.01	] : 0.01	2 : 0.01	a : 0.01	i : 0.01	
c : 0.20	^ : 0.14	y : 0.07	b : 0.07	e : 0.07	f : 0.07	w : 0.07	g : 0.07	d : 0.07	] : 0.05	i : 0.03	x : 0.01	2 : 0.01	
b : 0.14	c : 0.14	d : 0.14	^ : 0.14	] : 0.07	e : 0.07	f : 0.07	g : 0.07	y : 0.05	i : 0.03	2 : 0.01	
^ : 0.14	c : 0.12	d : 0.12	b : 0.09	f : 0.09	e : 0.07	g : 0.07	y : 0.05	2 : 0.05	] : 0.03	3 : 0.03	i : 0.03	a : 0.01	7 : 0.01	
d : 0.16	^ : 0.14	c : 0.12	f : 0.11	] : 0.09	2 : 0.09	g : 0.07	3 : 0.05	b : 0.03	a : 0.03	i : 0.03	7 : 0.01	
d : 0.18	^ : 0.14	2 : 0.12	b : 0.09	c : 0.07	f : 0.07	3 : 0.07	g : 0.07	] : 0.05	i : 0.03	7 : 0.01	a : 0.01	4 : 0.01	
d : 0.22	2 : 0.16	^ : 0.14	c : 0.07	b : 0.07	f : 0.07	3 : 0.05	] : 0.03	i : 0.03	7 : 0.01	a : 0.01	h : 0.01	g : 0.01	5 : 0.01	4 : 0.01	
d : 0.22	^ : 0.14	c : 0.11	] : 0.09	2 : 0.09	3 : 0.07	a : 0.03	e : 0.03	i : 0.03	f : 0.03	b : 0.03	7 : 0.01	h : 0.01	5 : 0.01	4 : 0.01	
d : 0.14	] : 0.12	c : 0.12	e : 0.09	b : 0.09	f : 0.07	^ : 0.07	3 : 0.05	g : 0.03	i : 0.03	: : 0.01	7 : 0.01	h : 0.01	5 : 0.01	4 : 0.01	a : 0.01	2 : 0.01	
d : 0.16	b : 0.14	e : 0.09	c : 0.09	] : 0.05	g : 0.05	f : 0.05	^ : 0.05	2 : 0.05	: : 0.03	3 : 0.03	a : 0.03	i : 0.03	7 : 0.01	h : 0.01	5 : 0.01	4 : 0.01	

#score	1167.595872987828
#seq	54
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_CDS_m3_run1.txt

#BEAR
ccceeeee!!ddddmmmmdddd4444eeeee	chr17:4916794-4917066(+)$1	272	185	216	11.5752
ee!!bb[ccc[cccmmmmccc22cccbb22e	chr16:89857841-89858095(-)$1	254	46	77	13.1046
eeeedddd[a!!ccclllccc22a22dddd2	chr13:113835440-113835712(-)$1	272	137	168	10.8059
gggggg$$$$$cccmmmmcccgggggggeee	chr7:36320579-36320827(+)$1	248	66	97	13.3132
####eeeee!!ccclllccc4444eeeeebb	chr11:68207067-68207354(+)$1	287	182	213	11.7243
gggggg"""eeeeemmmmeeeee4444gggg	chr8:23002475-23002749(-)$1	274	117	148	11.5984
a[bb"""ccccccnnnnnccc22ccc333bb	chr20:4162964-4163235(+)$1	271	101	132	10.4380
[ffffff[a!!cccmmmmccc333a]fffff	chr17:4692823-4693070(+)$1	247	82	113	14.4096
!iiiiiiiii!!bbmmmmbb22iiiiiiiii	chr16:88105514-88105785(+)$1	271	181	212	12.9571
fff!!ffffffcccmmmmccc]fffffffff	chr16:30016433-30016690(+)$1	257	105	136	11.9050
$$ggggggg!!cccmmmmcccggggggg444	chr2:74595127-74595414(-)$1	287	187	218	13.8586
&&&bb[eeeeecccmmmmccc333eeeeebb	chr20:18523522-18523779(+)$1	257	110	141	10.9680
d!!iiiiiiiiibbmmmmbb]iiiiiiiiid	chr15:91456671-91456944(+)$1	273	113	144	12.0846
===!!bb[bb[cccmmmmcccbbbb22====	chr17:40821495-40821784(-)$1	289	124	155	12.2452
eeee[ffffffcccmmmmccc333ffffff]	chr17:77809393-77809689(-)$1	296	7	38	13.1459
ggg[dddd"""cccmmmmcccdddd333ggg	chr17:79974558-79974802(+)$1	244	194	225	13.6665
!!bb[a[gggggggmmmmggggggg]a22bb	chr21:45735910-45736230(+)$1	320	159	190	11.3710
ee[bba[ddddcccmmmmccc]dddd]a]bb	chr19:17295508-17295776(+)$1	268	42	73	11.6442
=========[ddddmmmmdddd=========	chr17:19459133-19459411(+)$1	278	184	215	13.3720
f[bb####a!!cccmmmmccc22a22bbfff	chr12:113725813-113726069(+)$1	256	161	192	13.8213
eeee[ccc[a!!ccclllccc22a]ccc]ee	chr15:101865125-101865420(-)$1	295	50	81	12.5711
####ccc[ccc[bbmmmmbbccc]cccccc2	chr22:50317811-50318113(+)$1	302	188	219	11.5706
b!!ccc"""eeeeemmmmeeeee4444ccc]	chr22:44332770-44333055(+)$1	285	217	248	11.1533
eeggggggg####bblllbb333ggggggg:	chr19:36227427-36227697(+)$1	270	163	194	10.2642
eee####bb[ddddmmmmdddd]bb4444ee	chr3:57570074-57570343(-)$1	269	94	125	11.0395
:ggggggg[a[cccmmmmccc22a]gggggg	chr11:65401453-65401697(+)$1	244	159	190	14.2196
ccc[eeeee!!ccclllccc]eeeee333cc	chr7:127729363-127729664(+)$1	301	235	266	11.1858
c$$$$$ccc!!cccmmmmccc22ccc22ccc	chr5:1060456-1060755(-)$1	299	242	273	13.4128
b[bb!!eeeee[bbmmmmbbeeeee333bb]	chr22:50354786-50355078(+)$1	292	8	39	10.2334
ddd[bb$$$$$cccmmmmccc4444bb]ddd	chr1:161192786-161193014(-)$1	228	27	58	11.9778
d[eeeee!!bbcccmmmmccc]bb]eeeee2	chr20:44515652-44515910(-)$1	258	204	235	11.9456
[a[ccc[ccc[cccmmmmcccccc]ccca]d	chr16:70711668-70711965(-)$1	297	144	175	13.4117
===[ccc[a[ddddmmmmdddd]accc====	chr7:100285137-100285390(-)$1	253	97	128	12.9907
cggggggg####bblllbb4444ggggggg]	chr8:145011280-145011589(-)$1	309	167	198	11.2232
ggggggg!!a[ddddllldddd]a22ggggg	chr20:61439429-61439682(+)$1	253	117	148	11.1878
hh!!dddd"""cccmmmmccc22dddd]hhh	chr11:118514571-118514892(+)$1	321	76	107	12.9676
[ddddaccc!!cccmmmmccc22ccc]a]dd	chr12:57499260-57499520(-)$1	260	82	113	13.7545
==========[cccmmmmccc22========	chr2:242592758-242593068(+)$1	310	109	140	15.9147
!a[ccc[ffffffammmma]ffffff]ccc]	chr1:236205489-236205783(-)$1	294	238	269	10.6060
[eeeee####cccammmma]ccceeeee]bb	chr17:77081850-77082139(+)$1	289	185	216	12.1387
ee"""eeeee[cccmmmmccc]eeeee]eee	chr17:80007776-80008048(-)$1	272	68	99	12.9985
[a[a[ffffffcccmmmmccc]ffffff]a]	chr22:50857628-50857892(+)$1	264	72	103	12.8039
eeeeeccc"""cccmmmmccc333ccc4444	chr20:34214168-34214415(-)$1	247	134	165	14.7241
feeeee!!a[ddddmmmmdddd]a22eeeee	chr1:228334960-228335211(+)$1	251	171	202	11.6093
==========ddddmmmmdddd]========	chr16:667006-667312(+)$1	306	106	137	13.3926
g[bb"""ccc[cccmmmmcccccc22bb]gg	chr16:89774252-89774534(-)$1	282	123	154	13.0974
ggggggg[ccc[ccclllccc]ccc]ggggg	chr7:5265281-5265588(+)$1	307	272	303	12.0228
i[ffffff[a[ccclllccc]a]ffffffii	chr17:79479273-79479551(-)$1	278	28	59	11.2106
eee[eeeee!!cccmmmmccceeeeeeeeee	chr3:49051473-49051766(+)$1	293	109	140	12.7141
!!ggggggg"""bbmmmmbb333ggggggg2	chr6:160517310-160517590(+)$1	280	65	96	13.7872
:bb[==========mmmm==========]bb	chr19:18276806-18277072(+)$1	266	111	142	11.6201
ggggggg"""ddddllldddd333ggggggg	chr11:992355-992632(+)$1	277	244	275	11.9219

#otherMatches

#Seq PSSM
UCUGAUGUCUGAGUGUCUGCUCUACCACAUC	chr17:4916794-4917066(+)$1	272	185	216	11.5752
UGUGCACAGUCUCCUUCUGGAAUACUUGAUC	chr16:89857841-89858095(-)$1	254	46	77	13.1046
CUCAUGCGUGCUGGCUCUGCCUUCUUUGCAG	chr13:113835440-113835712(-)$1	272	137	168	10.8059
CUGGCUUCUCAGGCCGCCGCCAGCCGGGACU	chr7:36320579-36320827(+)$1	248	66	97	13.3132
GCAUGCGGAAAGUCCAUGAUGAGCUCCGUGA	chr11:68207067-68207354(+)$1	287	182	213	11.7243
CGCCUGCUCAGGAGACUGCUUCUUUUCCAGG	chr8:23002475-23002749(-)$1	274	117	148	11.5984
GUGGUGGAGUGCGAGGACUGUGAGCUGAUCC	chr20:4162964-4163235(+)$1	271	101	132	10.4380
CCAGUCUGAAACCCGAAGGGGAUGUGGGGCU	chr17:4692823-4693070(+)$1	247	82	113	14.4096
AUCGCCGUGGCCUCCUCGGACCCCGCGGCGG	chr16:88105514-88105785(+)$1	271	181	212	12.9571
CAGAUGGCGGUGGGACCCCCCGACUGCCCUG	chr16:30016433-30016690(+)$1	257	105	136	11.9050
AGUUUGAACUAAGUGAGAACUGUUCAGAGCG	chr2:74595127-74595414(-)$1	287	187	218	13.8586
UAAGCAUGGCACUAACUCUGGAAUUGUCAGU	chr20:18523522-18523779(+)$1	257	110	141	10.9680
GACCGCUUGGGCCCACAUGGUGCCCGGGUGC	chr15:91456671-91456944(+)$1	273	113	144	12.0846
ACUCUGCCUCUCUGUCUGCAGGAGCCUGGUC	chr17:40821495-40821784(-)$1	289	124	155	12.2452
GGUUAAGGGCGCAGAGGCCUGACCUGCCCUG	chr17:77809393-77809689(-)$1	296	7	38	13.1459
CCGGUGGGUCUGGGGGCACCUCCCGUGGCGG	chr17:79974558-79974802(+)$1	244	194	225	13.6665
GUGUCCGGGGCAGGUUUCCCUGCCUGGCAGC	chr21:45735910-45736230(+)$1	320	159	190	11.3710
GCUGCUGCCCGGGCACUCGCUGCGGGGACGC	chr19:17295508-17295776(+)$1	268	42	73	11.6442
CAUGGUGGAGCUGGGCGCUCAGUCCAUCGUG	chr17:19459133-19459411(+)$1	278	184	215	13.3720
AAGUUGAAGGAGCGCUACCGCAACGUGCUGG	chr12:113725813-113726069(+)$1	256	161	192	13.8213
GGGCAUCAUGUUUGACAUUCACUCCUGAAGC	chr15:101865125-101865420(-)$1	295	50	81	12.5711
UGUUGCAGAGUGUGACUCCAGCUGUGUGGGC	chr22:50317811-50318113(+)$1	302	188	219	11.5706
AGGUCGCCAUGCCCAGCUGGGCAAACAUGAG	chr22:44332770-44333055(+)$1	285	217	248	11.1533
GUGAGGCUUCGAGCUCUGAGGAAGAGCCUCC	chr19:36227427-36227697(+)$1	270	163	194	10.2642
AUUAUUUCUUGGAGUGUGCUUUUGGUCUGGA	chr3:57570074-57570343(-)$1	269	94	125	11.0395
UGAGCCGCUCACCAAAGCUGGAGGUGUGGCU	chr11:65401453-65401697(+)$1	244	159	190	14.2196
GCCUGCUCAACGUGGAACACCUGAGUGCCGG	chr7:127729363-127729664(+)$1	301	235	266	11.1858
GAGGUCGCAGAUGCUGAAGCAGAUGCAGCUG	chr5:1060456-1060755(-)$1	299	242	273	13.4128
CGAGAAGGCGUACCAGGUGGGCGCCGUGCUG	chr22:50354786-50355078(+)$1	292	8	39	10.2334
CUGGCUGGAUACCUUUUUGGGGAGGGGGCAG	chr1:161192786-161193014(-)$1	228	27	58	11.9778
GCCCACUGAGCCAGAAAGCUGAGCAGGUGGC	chr20:44515652-44515910(-)$1	258	204	235	11.9456
UGACUCGCUGCUUCCUCAGAAUGGAGAGCUG	chr16:70711668-70711965(-)$1	297	144	175	13.4117
GUGGAGGUGGUUGGGUGCCUGGGUCCUCACU	chr7:100285137-100285390(-)$1	253	97	128	12.9907
GCCUCCCCACAGCCCCGGGAGAAGGGGAGGA	chr8:145011280-145011589(-)$1	309	167	198	11.2232
GGGCAGCUUGUGUCUGAUGGAUCCCUGCUGU	chr20:61439429-61439682(+)$1	253	117	148	11.1878
CCUCCCCAAAGGUCUGAGGACAGUGGGUGGG	chr11:118514571-118514892(+)$1	321	76	107	12.9676
UGGGCCGGAGCAAGCAGCCUUAAUCCUGUGC	chr12:57499260-57499520(-)$1	260	82	113	13.7545
GCUUGUGGCCUGUGGGGCCAUCUGGCCAUGA	chr2:242592758-242593068(+)$1	310	109	140	15.9147
GUCCAGCCACCACCAAUGGCGUGGUGCCUGC	chr1:236205489-236205783(-)$1	294	238	269	10.6060
CUGGCCCCUCUGCCCCAGGUGCAGGCCGUCA	chr17:77081850-77082139(+)$1	289	185	216	12.1387
CUAAGGGGCAGCUUAAGAAAGAUGCCUGGGG	chr17:80007776-80008048(-)$1	272	68	99	12.9985
GGGAGGAAGGAGCAUCCUUGCAUCCUUUGUG	chr22:50857628-50857892(+)$1	264	72	103	12.8039
AGACCGUGCUCGCAGAAGUGCCCACACAACU	chr20:34214168-34214415(-)$1	247	134	165	14.7241
GCCAUGAACCGCAUCUGUGUGCUGGACGUGG	chr1:228334960-228335211(+)$1	251	171	202	11.6093
GGUCUUGGCCCUGGGAGGCCAGUGGCCGAGG	chr16:667006-667312(+)$1	306	106	137	13.3926
AUCCUUCUGUUCGUUCAGAUGACACCGGCUG	chr16:89774252-89774534(-)$1	282	123	154	13.0974
AAAGAAAAGUGAGUUGCAAAUAUACGUUUCU	chr7:5265281-5265588(+)$1	307	272	303	12.0228
GGCGGUUGCGAUCUUGGAGGCCACGGCCGCU	chr17:79479273-79479551(-)$1	278	28	59	11.2106
GUCAUGCAGAUGCUCCCAGGCUUGCAGGCUC	chr3:49051473-49051766(+)$1	293	109	140	12.7141
AGUCUUUGCAAACUUUUUAGACCGUAAGGAG	chr6:160517310-160517590(+)$1	280	65	96	13.7872
GAGGGCCUUUUGGGGAGUCCCAGGAGGUGCU	chr19:18276806-18277072(+)$1	266	111	142	11.6201
UGAGUGAAGAGGUGUGGUACCGAGUCAUUCA	chr11:992355-992632(+)$1	277	244	275	11.9219

#DB
((((((((..((((....))))....)))))	chr17:4916794-4917066(+)$1	1	185	216	11.5752
((..((.(((.(((....)))..)))))..)	chr16:89857841-89858095(-)$1	1	46	77	13.1046
((((((((.(..(((...)))..)..)))).	chr13:113835440-113835712(-)$1	1	137	168	10.8059
((((((.....(((....)))))))))))))	chr7:36320579-36320827(+)$1	1	66	97	13.3132
....(((((..(((...)))....)))))))	chr11:68207067-68207354(+)$1	1	182	213	11.7243
((((((...(((((....)))))....))))	chr8:23002475-23002749(-)$1	1	117	148	11.5984
(.((...((((((.....)))..)))...))	chr20:4162964-4163235(+)$1	1	101	132	10.4380
.((((((.(..(((....)))...).)))))	chr17:4692823-4693070(+)$1	1	82	113	14.4096
.(((((((((..((....))..)))))))))	chr16:88105514-88105785(+)$1	1	181	212	12.9571
(((..(((((((((....))).)))))))))	chr16:30016433-30016690(+)$1	1	105	136	11.9050
..(((((((..(((....))))))))))...	chr2:74595127-74595414(-)$1	1	187	218	13.8586
...((.((((((((....)))...)))))))	chr20:18523522-18523779(+)$1	1	110	141	10.9680
(..(((((((((((....)).))))))))))	chr15:91456671-91456944(+)$1	1	113	144	12.0846
(((..((.((.(((....)))))))..))))	chr17:40821495-40821784(-)$1	1	124	155	12.2452
((((.(((((((((....)))...)))))).	chr17:77809393-77809689(-)$1	1	7	38	13.1459
(((.((((...(((....)))))))...)))	chr17:79974558-79974802(+)$1	1	194	225	13.6665
..((.(.(((((((....))))))).)..))	chr21:45735910-45736230(+)$1	1	159	190	11.3710
((.(((.(((((((....))).)))).).))	chr19:17295508-17295776(+)$1	1	42	73	11.6442
(((((((((.((((....)))))))))))))	chr17:19459133-19459411(+)$1	1	184	215	13.3720
(.((....(..(((....)))..)..)))))	chr12:113725813-113726069(+)$1	1	161	192	13.8213
((((.(((.(..(((...)))..).))).))	chr15:101865125-101865420(-)$1	1	50	81	12.5711
....(((.(((.((....))))).)))))).	chr22:50317811-50318113(+)$1	1	188	219	11.5706
(..(((...(((((....)))))....))).	chr22:44332770-44333055(+)$1	1	217	248	11.1533
))(((((((....((...))...))))))).	chr19:36227427-36227697(+)$1	1	163	194	10.2642
(((....((.((((....)))).))....))	chr3:57570074-57570343(-)$1	1	94	125	11.0395
.(((((((.(.(((....)))..).))))))	chr11:65401453-65401697(+)$1	1	159	190	14.2196
(((.(((((..(((...))).)))))...))	chr7:127729363-127729664(+)$1	1	235	266	11.1858
(.....(((..(((....)))..)))..)))	chr5:1060456-1060755(-)$1	1	242	273	13.4128
(.((..(((((.((....)))))))...)).	chr22:50354786-50355078(+)$1	1	8	39	10.2334
(((.((.....(((....)))....)).)))	chr1:161192786-161193014(-)$1	1	27	58	11.9778
(.(((((..(((((....))).)).))))).	chr20:44515652-44515910(-)$1	1	204	235	11.9456
.(.(((.(((.(((....)))))).)))).)	chr16:70711668-70711965(-)$1	1	144	175	13.4117
(((.(((.(.((((....)))).))))))))	chr7:100285137-100285390(-)$1	1	97	128	12.9907
((((((((....((...))....))))))).	chr8:145011280-145011589(-)$1	1	167	198	11.2232
(((((((..(.((((...)))).)..)))))	chr20:61439429-61439682(+)$1	1	117	148	11.1878
((..((((...(((....)))..)))).)))	chr11:118514571-118514892(+)$1	1	76	107	12.9676
.((((((((..(((....)))..))).).))	chr12:57499260-57499520(-)$1	1	82	113	13.7545
((((((((((.(((....)))..))))))))	chr2:242592758-242593068(+)$1	1	109	140	15.9147
.(.(((.(((((((....).)))))).))).	chr1:236205489-236205783(-)$1	1	238	269	10.6060
.(((((....((((....).)))))))).))	chr17:77081850-77082139(+)$1	1	185	216	12.1387
((...(((((.(((....))).))))).)))	chr17:80007776-80008048(-)$1	1	68	99	12.9985
.(.(.(((((((((....))).)))))).).	chr22:50857628-50857892(+)$1	1	72	103	12.8039
((((((((...(((....)))...)))....	chr20:34214168-34214415(-)$1	1	134	165	14.7241
((((((..(.((((....)))).)..)))))	chr1:228334960-228335211(+)$1	1	171	202	11.6093
((((((((((((((....)))).))))))))	chr16:667006-667312(+)$1	1	106	137	13.3926
(.((...(((.(((....))))))..)).))	chr16:89774252-89774534(-)$1	1	123	154	13.0974
(((((((.(((.(((...))).))).)))))	chr7:5265281-5265588(+)$1	1	272	303	12.0228
(.((((((.(.(((...))).).))))))))	chr17:79479273-79479551(-)$1	1	28	59	11.2106
(((.(((((..(((....)))))))))))))	chr3:49051473-49051766(+)$1	1	109	140	12.7141
..(((((((...((....))...))))))).	chr6:160517310-160517590(+)$1	1	65	96	13.7872
.((.((((((((((....)))))))))).))	chr19:18276806-18277072(+)$1	1	111	142	11.6201
(((((((...((((...))))...)))))))	chr11:992355-992632(+)$1	1	244	275	11.9219

#PSSM
e : 0.19	g : 0.13	[ : 0.09	= : 0.09	c : 0.07	! : 0.07	f : 0.05	d : 0.05	# : 0.03	b : 0.03	: : 0.03	a : 0.01	$ : 0.01	& : 0.01	h : 0.01	i : 0.01	
e : 0.23	g : 0.15	[ : 0.11	= : 0.09	! : 0.07	a : 0.05	c : 0.03	# : 0.03	f : 0.03	$ : 0.03	d : 0.03	i : 0.01	& : 0.01	h : 0.01	b : 0.01	
g : 0.21	e : 0.17	b : 0.11	= : 0.09	! : 0.07	[ : 0.07	f : 0.05	c : 0.03	# : 0.03	d : 0.03	i : 0.01	& : 0.01	$ : 0.01	" : 0.01	
g : 0.19	e : 0.15	b : 0.13	[ : 0.11	! : 0.07	# : 0.05	= : 0.05	c : 0.05	f : 0.03	i : 0.03	$ : 0.01	d : 0.01	" : 0.01	a : 0.01	
g : 0.19	e : 0.15	c : 0.09	b : 0.07	d : 0.07	[ : 0.07	= : 0.07	" : 0.05	! : 0.05	f : 0.03	i : 0.03	# : 0.03	$ : 0.01	
g : 0.19	e : 0.15	c : 0.13	f : 0.09	= : 0.07	b : 0.05	d : 0.05	a : 0.05	" : 0.03	i : 0.03	# : 0.03	[ : 0.01	$ : 0.01	! : 0.01	
e : 0.15	g : 0.15	c : 0.11	[ : 0.09	f : 0.09	" : 0.07	= : 0.07	d : 0.05	# : 0.05	$ : 0.03	i : 0.03	b : 0.01	! : 0.01	
c : 0.15	e : 0.13	g : 0.11	[ : 0.09	f : 0.09	d : 0.07	= : 0.07	" : 0.05	! : 0.05	$ : 0.03	i : 0.03	# : 0.03	b : 0.01	
c : 0.15	e : 0.11	" : 0.11	[ : 0.07	a : 0.07	f : 0.07	g : 0.07	= : 0.07	! : 0.05	$ : 0.03	i : 0.03	b : 0.03	# : 0.03	d : 0.01	
! : 0.17	c : 0.11	a : 0.09	e : 0.09	" : 0.09	f : 0.07	[ : 0.07	# : 0.05	= : 0.05	$ : 0.03	i : 0.03	b : 0.03	g : 0.01	d : 0.01	
! : 0.21	[ : 0.17	d : 0.15	e : 0.07	c : 0.07	f : 0.07	" : 0.07	$ : 0.03	# : 0.03	i : 0.01	g : 0.01	b : 0.01	= : 0.01	
c : 0.55	d : 0.15	! : 0.05	[ : 0.05	e : 0.03	# : 0.03	i : 0.01	g : 0.01	f : 0.01	" : 0.01	= : 0.01	
c : 0.61	d : 0.15	b : 0.11	e : 0.03	g : 0.01	# : 0.01	f : 0.01	= : 0.01	
c : 0.57	d : 0.15	b : 0.13	e : 0.03	a : 0.03	n : 0.01	g : 0.01	= : 0.01	
m : 0.78	l : 0.09	c : 0.05	n : 0.01	b : 0.01	d : 0.01	
m : 0.78	l : 0.19	n : 0.01	
m : 0.78	l : 0.19	n : 0.01	
m : 0.78	l : 0.09	c : 0.05	n : 0.01	b : 0.01	d : 0.01	
c : 0.59	d : 0.15	b : 0.13	e : 0.03	a : 0.03	g : 0.01	= : 0.01	
c : 0.59	d : 0.15	b : 0.11	e : 0.03	] : 0.03	g : 0.01	4 : 0.01	= : 0.01	
c : 0.57	d : 0.15	e : 0.05	] : 0.05	4 : 0.03	3 : 0.03	2 : 0.01	g : 0.01	f : 0.01	= : 0.01	
2 : 0.21	d : 0.15	3 : 0.13	] : 0.11	e : 0.09	c : 0.07	g : 0.05	4 : 0.05	i : 0.01	b : 0.01	f : 0.01	a : 0.01	= : 0.01	
2 : 0.19	3 : 0.13	e : 0.11	] : 0.11	c : 0.09	4 : 0.07	g : 0.05	f : 0.05	i : 0.03	b : 0.03	d : 0.03	= : 0.03	
c : 0.13	a : 0.13	g : 0.11	4 : 0.09	3 : 0.09	e : 0.09	f : 0.07	= : 0.07	b : 0.05	d : 0.05	i : 0.03	] : 0.01	
c : 0.15	g : 0.13	e : 0.13	2 : 0.09	f : 0.09	4 : 0.07	= : 0.07	] : 0.07	d : 0.05	i : 0.03	b : 0.03	a : 0.01	
c : 0.17	g : 0.13	e : 0.13	2 : 0.11	f : 0.09	4 : 0.07	= : 0.07	] : 0.05	i : 0.03	3 : 0.03	d : 0.03	b : 0.01	
g : 0.17	e : 0.15	f : 0.09	c : 0.09	b : 0.07	3 : 0.07	= : 0.07	4 : 0.05	] : 0.05	d : 0.03	i : 0.03	2 : 0.03	a : 0.01	
g : 0.19	e : 0.13	= : 0.11	f : 0.09	c : 0.09	3 : 0.07	b : 0.05	] : 0.05	i : 0.03	2 : 0.03	a : 0.03	4 : 0.03	d : 0.01	
g : 0.17	e : 0.15	] : 0.13	f : 0.09	= : 0.09	c : 0.07	4 : 0.05	2 : 0.03	d : 0.03	3 : 0.03	i : 0.03	b : 0.01	a : 0.01	h : 0.01	
g : 0.19	e : 0.15	b : 0.15	= : 0.09	c : 0.09	f : 0.07	d : 0.05	i : 0.05	4 : 0.03	2 : 0.01	] : 0.01	h : 0.01	a : 0.01	
e : 0.15	b : 0.13	g : 0.13	] : 0.11	= : 0.09	2 : 0.07	d : 0.07	f : 0.05	i : 0.03	4 : 0.03	c : 0.03	: : 0.01	h : 0.01	

#score	643.6820836972348
#seq	52
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_CDS_m2_run2.txt

#BEAR
iiii!!eeeee"""bboooooobb333eeeeeiiiiiiii	chr19:49004669-49004940(-)$1	271	72	112	17.9845
=====####eeeeebboooooobb]eeeee22========	chr6:151335908-151336150(+)$1	242	21	61	17.1331
"ccc!!ccc!!a[bboooooobba]ccc333ccc4444cc	chr1:44451028-44451351(+)$1	323	209	249	17.5829
gggggg!!eeeee[bboooooobb]eeeee22ggggggg3	chr17:61914873-61915146(-)$1	273	30	70	15.9640
##bb####bb[ddddoooooodddd]bb4444bb333fff	chr12:46754872-46755107(-)$1	235	168	208	15.9023
eeee!!dddd"""a[cccmmmmccca4444dddd]eeeee	chr17:80765396-80765681(+)$1	285	103	143	12.5064
ggggg"""ccceeeeennnnneeeee4444ccc333gggg	chr20:55092020-55092383(+)$1	363	222	262	14.3346
ffffff!!ccc"""cccmmmmccc333ccc]ffffff]cc	chr2:61711111-61711371(-)$1	260	146	186	12.9624
[eeeee[bb[a[ddddoooooodddda]bb4444eeeee4	chr5:149755523-149755795(+)$1	272	198	238	14.9516
gggg!!cccccc[cccooooooccc22ccc]ccc22gggg	chr17:63531698-63532003(-)$1	305	38	78	20.0495
[ggggggg[ccc"""eeeeellleeeee333ccc22gggg	chr17:37902847-37903128(+)$1	281	79	119	12.4909
[bb[hhhhhhhh[cccooooooccc]hhhhhhhhbb]ccc	chr7:127343108-127343368(+)$1	260	193	233	14.1652
[iiiiiiiii"""bbqqqqqqqqbb22iiiiiiiii]a]f	chr6:158499071-158499299(+)$1	228	26	66	12.9515
f!!=============oooooo=============fffff	chr6:13618205-13618437(+)$1	232	52	92	18.1153
eeeee$$$$$a!!cccooooooccc22a22eeeee22a]e	chr6:31608174-31608429(-)$1	255	133	173	16.9532
[cccbb[ccc"""cccooooooccc333ccc]bb]ccc]b	chr5:176942565-176942787(-)$1	222	122	162	18.6296
=========[a[bb[aooooooa]bb]a]===========	chr17:37863065-37863372(+)$1	307	76	116	18.5111
bb####ddddccc!!bboooooobb22ccc]dddd333bb	chr5:140038786-140039037(+)$1	251	10	50	14.1906
i####dddd!!eeeeeooooooeeeee]dddd4444iiii	chr13:25893305-25893595(+)$1	290	219	259	15.7362
%%%ccc!!bb"""bboooooobb]bb]ccc]iiiiiiiii	chr17:1679698-1679953(+)$1	255	117	157	14.6098
==========[a[cccooooooccc]a22==========c	chr19:17448686-17448928(+)$1	242	139	179	20.4595
###cccbb[ffffffooooooffffff]bb]ccc22ffff	chr9:123628164-123628535(-)$1	371	100	140	13.2424
ddd!!cccbb[acccbboooooobb22ccc]a]bb333cc	chr19:6466279-6466593(+)$1	314	1	41	15.4034
gggg[dddd!!bbcccooooooccc]bb]ddddggggggg	chr17:80021227-80021495(-)$1	268	100	140	16.7635
ddddd[eeeee!!cccooooooccc22eeeeedddd]ddd	chr17:72860830-72861046(-)$1	216	87	127	15.5994
ccccc[a[ccc[ddddoooooodddd333ccc]a22ccc]	chr19:581489-581729(+)$1	240	163	203	17.7086
+ggggggg"""a[cccooooooccc]a4444ggggggg33	chr17:39974174-39974469(+)$1	295	37	77	19.3026
c[================mmmm================]c	chr1:17960934-17961195(+)$1	261	140	180	14.9531
a[eeeee$$$$$ddddoooooodddd]eeeee]a22ccc]	chr20:400270-400520(+)$1	250	166	206	15.5362
iiiiiiiii[bb!!ddddllldddd22bb]iiiiiiiiiF	chr1:15545678-15545959(+)$1	281	235	275	13.3228
eeeee[cccccc[bbrrrrrrrrrbb]ccc]ccc4444ee	chrX:152914525-152914809(+)$1	284	157	197	12.5539
bbb[bb[bb[bb[cccooooooccc]bbbb22bb]bb]bb	chr6:170123831-170124042(-)$1	211	102	142	14.2837
!!ccc!!eeeee[cccnnnnnccc22eeeeeccc4444cc	chr3:49137154-49137457(-)$1	303	247	287	14.1858
[ccc"""eeeee[bboooooobbeeeee]cccbb22eeee	chr1:161197990-161198301(+)$1	311	246	286	15.1885
gggg[a[ccc"""cccooooooccc4444cccaggggggg	chr21:47648359-47648678(-)$1	319	247	287	19.9243
===========ddddaooooooa]dddd]===========	chr20:34220507-34220777(-)$1	270	115	155	18.0987
!!ccc[ccc!!eeeeeooooooeeeee4444ccc]ccc]c	chr19:49459488-49459728(+)$1	240	129	169	17.6289
ggggg"""bba[ddddoooooodddd]a4444bb333ggg	chr16:29815285-29815518(+)$1	233	35	75	18.6124
gggggggbb!!a[cccooooooccc]a4444bb]gggggg	chr16:88722587-88722820(-)$1	233	65	105	19.0917
#a[eeeee"""eeeeeooooooeeeeeeeeee]a22iiii	chr7:1027952-1028195(+)$1	243	138	178	16.0552
eeedddd!!ccc[cccooooooccc]ccc]dddd]eeeee	chr12:56511158-56511381(+)$1	223	52	92	16.2817
f[bb"""eeeee[cccooooooccc333eeeee4444bb]	chr9:111637121-111637373(-)$1	252	78	118	17.7870
h[a[dddda[bb[cccooooooccc]bb]a]dddda]hhh	chr1:11115022-11115268(-)$1	246	178	218	16.2849
c[ccc!!gggggggccclllccc4444ggggggg22ccc]	chr11:129747084-129747389(-)$1	305	188	228	14.0374
ggggg!!ccc"""ddddooooooddddccc22gggggggD	chr2:74682504-74682781(+)$1	277	12	52	15.6481
+ggggggg!!bb[cccooooooccc22bb]ggggggg]dd	chr11:10819262-10819536(-)$1	274	18	58	17.3206

#otherMatches

#Seq PSSM
GUGGCUGGAGGGCUGCCCCUGCGCUCACCUCCUCGCGUUC	chr19:49004669-49004940(-)$1	271	72	112	17.9845
CCAGAGAGGUGCUGGCAGUUUAGCUUGGCAGGUUUGGUGG	chr6:151335908-151336150(+)$1	242	21	61	17.1331
CGCUACCGCAUGAUCAAGCACGACCGCGACAAGCAUAACG	chr1:44451028-44451351(+)$1	323	209	249	17.5829
GGGGCUCCAGCAGGGCUCUGGUGUGCUGCUCAGGCCCUAC	chr17:61914873-61915146(-)$1	273	30	70	15.9640
GAUUGUUUUGGAUUGGGUACACAAUGCACCUGGAGGUGGC	chr12:46754872-46755107(-)$1	235	168	208	15.9023
GCUGAAGGACAAGGACACGGUCGUGCGGUGGUCUGCAGCC	chr17:80765396-80765681(+)$1	285	103	143	12.5064
CUCCCAAAAGCACAGGUGGGUCCUGUUGUAGCUACAGGGA	chr20:55092020-55092383(+)$1	363	222	262	14.3346
CCUGAACAUAGAACGAACUUUUUCUUACUACUUCAGGCUG	chr2:61711111-61711371(-)$1	260	146	186	12.9624
CCCUGUGCGAGUGGGCACCCAAGCCCCCCGGAAAGCAGGA	chr5:149755523-149755795(+)$1	272	198	238	14.9516
CUCCGUAAGGAUGGAAGUCGGGUUCGUGUCUCUUCAGGAG	chr17:63531698-63532003(-)$1	305	38	78	20.0495
UGGGGCCCUGGCCCAGGAGGGAGCUUCCCAAGCCUCGGGC	chr17:37902847-37903128(+)$1	281	79	119	12.4909
ACUGCUUCAGAGAGAUGUUCAGAUCAUUCUGGAGAGCUGC	chr7:127343108-127343368(+)$1	260	193	233	14.1652
UUCGUGGCGCAGACCUCUAUUGUGGAAGUGUCAUGAUCGC	chr6:158499071-158499299(+)$1	228	26	66	12.9515
UGCUAAUUAGAAAAUGUAACUCUAUUUUUUAGUUAAUUUG	chr6:13618205-13618437(+)$1	232	52	92	18.1153
GCUUCCCCAGCCCCUGGAACAACAGCAGAAGAGGCCAUGU	chr6:31608174-31608429(-)$1	255	133	173	16.9532
gauaccacacuuuuauaaucaaaugccugugagguuauGU	chr5:176942565-176942787(-)$1	222	122	162	18.6296
CUGUCUGAGGUGGCAUGACUUGGAGUGAGUUUGGAUGGGG	chr17:37863065-37863372(+)$1	307	76	116	18.5111
GAAAUGUGAGCAAGGUUGGGUAAGGAAUUGUUUCAAACUU	chr5:140038786-140039037(+)$1	251	10	50	14.1906
GAAGAGUUUAACUUAUUAAAUUGUAGGCAGAUGGUAUAAU	chr13:25893305-25893595(+)$1	290	219	259	15.7362
CUUGUCUCAGAUUGCCCAGCUGCCCUUGACCGGAAGCAUG	chr17:1679698-1679953(+)$1	255	117	157	14.6098
GCGCCGGAGCAGCGGCGCACCAGCCCCCGGCUCCGGCGCC	chr19:17448686-17448928(+)$1	242	139	179	20.4595
GACUGGGGUGGGGGUGUCAGAGCCCCUCCCACCAUAGGCC	chr9:123628164-123628535(-)$1	371	100	140	13.2424
GGGAGCCUUCGCACCCCAGACAAGGUAGGUAGGGAUCCAG	chr19:6466279-6466593(+)$1	314	1	41	15.4034
GGUCACUAUGGCGCCUUUCUGCAGGACGAGUGGGACCUGC	chr17:80021227-80021495(-)$1	268	100	140	16.7635
CCUUCACCAUUAAGGUGCUGGGGCCAGAGUGGGAGGAGCC	chr17:72860830-72861046(-)$1	216	87	127	15.5994
GUCCGUCCCUGCCAGCCCCACCGCUGACCCAGAGCUUGGA	chr19:581489-581729(+)$1	240	163	203	17.7086
GUGGCAUCUCUGUCCCUGGUUUGGGUCUCUUGGUGCUGGG	chr17:39974174-39974469(+)$1	295	37	77	19.3026
cuccggggcucuggggcucuggggcucuggggcucuggUG	chr1:17960934-17961195(+)$1	261	140	180	14.9531
AGGGAGACACCUGCGCACUGCCGCGCCUCUCCGUUACUGC	chr20:400270-400520(+)$1	250	166	206	15.5362
GGGGAGAGGAGCAGAACCCGAGGUUGAGCAUCUCUCUCCC	chr1:15545678-15545959(+)$1	281	235	275	13.3228
ACAGGAGGCUUCAGCAGAUUCCAGGCCGAGUGCCCUCACC	chrX:152914525-152914809(+)$1	284	157	197	12.5539
GUGAGGAAGCGGCCGGUGCGACCCGACCCUGACCCCGUCC	chr6:170123831-170124042(-)$1	211	102	142	14.2837
AAGGAAUUCCAGGCCCGGUGAGGGAGCUGGGUCCAUGGGG	chr3:49137154-49137457(-)$1	303	247	287	14.1858
AUUGAAUGUGGGAUCAGGCGGGGCCCAUGCAAGUUACUAC	chr1:161197990-161198301(+)$1	311	246	286	15.1885
CGGCAGACGUGGACCUACCUGCAGGACGAGCGCGCCGGCC	chr21:47648359-47648678(-)$1	319	247	287	19.9243
GGGUGGAGGCUGUGACUGUGAUGCUUACUGGCCUCUGCCC	chr20:34220507-34220777(-)$1	270	115	155	18.0987
GGGAUGCUCCCCCUCAGAUCUGUGAGGACCUGGGGAUCGU	chr19:49459488-49459728(+)$1	240	129	169	17.6289
CAGGAGCAGGCAGCAUCCCCAAAUGCCGAGAUCCACAUCC	chr16:29815285-29815518(+)$1	233	35	75	18.6124
GCAGGCAGCUCUGAGGACCCUCCCUGAAUCCGCAUGCCUG	chr16:88722587-88722820(-)$1	233	65	105	19.0917
CCAGGGCUCCAGGGGUGGGACGGCCCCAGCUCCGCCUGCC	chr7:1027952-1028195(+)$1	243	138	178	16.0552
GAGGGAAAGGCAACUCUGGUUUGAGGUGUAUUCCAUUCCU	chr12:56511158-56511381(+)$1	223	52	92	16.2817
GAAGUAUUAGAUAAUCUUUGCUGAUACAGUCUAUUUUCUC	chr9:111637121-111637373(-)$1	252	78	118	17.7870
CAGAUGCAGCUGAAGUACUACAACUCCGACGUGCACCGCG	chr1:11115022-11115268(-)$1	246	178	218	16.2849
GUGUAAGUCUCUGCCUCUGUGAGCCAUGCAGAGAGAUGCU	chr11:129747084-129747389(-)$1	305	188	228	14.0374
GGCUUUCCUUCCACAGGAGAAGCCCUGGAGUUGAGCCUGG	chr2:74682504-74682781(+)$1	277	12	52	15.6481
UUCUAAAACUGUGUAGUACCACCUAAAACUUUUUGGAUGG	chr11:10819262-10819536(-)$1	274	18	58	17.3206

#DB
((((..(((((...((......))...)))))))))))))	chr19:49004669-49004940(-)$1	1	72	112	17.9845
(((((....(((((((......)).)))))..))))))))	chr6:151335908-151336150(+)$1	1	21	61	17.1331
.(((..(((..(.((......))).)))...)))....))	chr1:44451028-44451351(+)$1	1	209	249	17.5829
((((((..(((((.((......)).)))))..))))))).	chr17:61914873-61915146(-)$1	1	30	70	15.9640
..((....((.((((......)))).))....))...)))	chr12:46754872-46755107(-)$1	1	168	208	15.9023
((((..((((...(.(((....))))....)))).)))))	chr17:80765396-80765681(+)$1	1	103	143	12.5064
(((((...((((((((.....)))))....)))...))))	chr20:55092020-55092383(+)$1	1	222	262	14.3346
((((((..(((...(((....)))...))).)))))).))	chr2:61711111-61711371(-)$1	1	146	186	12.9624
.(((((.((.(.((((......))))).))....))))).	chr5:149755523-149755795(+)$1	1	198	238	14.9516
((((..((((((.(((......)))..))).)))..))))	chr17:63531698-63532003(-)$1	1	38	78	20.0495
.(((((((.(((...(((((...)))))...)))..))))	chr17:37902847-37903128(+)$1	1	79	119	12.4909
.((.((((((((.(((......))).)))))))))).)))	chr7:127343108-127343368(+)$1	1	193	233	14.1652
.(((((((((...((........))..))))))))).).)	chr6:158499071-158499299(+)$1	1	26	66	12.9515
(..(((((((((((((......))))))))))))))))))	chr6:13618205-13618437(+)$1	1	52	92	18.1153
(((((.....(..(((......)))..)..)))))..).)	chr6:31608174-31608429(-)$1	1	133	173	16.9532
.(((((.(((...(((......)))...))).)).))).)	chr5:176942565-176942787(-)$1	1	122	162	18.6296
(((((((((.(.((.(......).)).).)))))))))))	chr17:37863065-37863372(+)$1	1	76	116	18.5111
((....(((((((..((......))..))).))))...))	chr5:140038786-140039037(+)$1	1	10	50	14.1906
(....((((..(((((......))))).))))....))))	chr13:25893305-25893595(+)$1	1	219	259	15.7362
...(((..((...((......)).)).))).)))))))))	chr17:1679698-1679953(+)$1	1	117	157	14.6098
((((((((((.(.(((......))).)..)))))))))))	chr19:17448686-17448928(+)$1	1	139	179	20.4595
...(((((.((((((......)))))).)).)))..))))	chr9:123628164-123628535(-)$1	1	100	140	13.2424
(((..(((((.((((((......))..))).).))...))	chr19:6466279-6466593(+)$1	1	1	41	15.4034
((((.((((..(((((......))).)).)))))))))))	chr17:80021227-80021495(-)$1	1	100	140	16.7635
(((((.(((((..(((......)))..))))))))).)))	chr17:72860830-72861046(-)$1	1	87	127	15.5994
(((((.(.(((.((((......))))...))).)..))).	chr19:581489-581729(+)$1	1	163	203	17.7086
.(((((((...(.(((......))).)....)))))))..	chr17:39974174-39974469(+)$1	1	37	77	19.3026
(.((((((((((((((((....)))))))))))))))).)	chr1:17960934-17961195(+)$1	1	140	180	14.9531
(.(((((.....((((......)))).))))).)..))).	chr20:400270-400520(+)$1	1	166	206	15.5362
(((((((((.((..((((...))))..)).))))))))))	chr1:15545678-15545959(+)$1	1	235	275	13.3228
(((((.((((((.((.........)).))).)))....))	chrX:152914525-152914809(+)$1	1	157	197	12.5539
(((.((.((.((.(((......))).))))..)).)).))	chr6:170123831-170124042(-)$1	1	102	142	14.2837
..(((..(((((.(((.....)))..))))))))....))	chr3:49137154-49137457(-)$1	1	247	287	14.1858
.(((...(((((.((......))))))).)))))..))))	chr1:161197990-161198301(+)$1	1	246	286	15.1885
((((.(.(((...(((......)))....)))))))))))	chr21:47648359-47648678(-)$1	1	247	287	19.9243
((((((((((((((((......).)))).)))))))))))	chr20:34220507-34220777(-)$1	1	115	155	18.0987
..(((.(((..(((((......)))))....))).))).)	chr19:49459488-49459728(+)$1	1	129	169	17.6289
(((((...(((.((((......)))).)....))...)))	chr16:29815285-29815518(+)$1	1	35	75	18.6124
(((((((((..(.(((......))).)....)).))))))	chr16:88722587-88722820(-)$1	1	65	105	19.0917
.(.(((((...(((((......)))))))))).)..))))	chr7:1027952-1028195(+)$1	1	138	178	16.0552
(((((((..(((.(((......))).))).)))).)))))	chr12:56511158-56511381(+)$1	1	52	92	16.2817
(.((...(((((.(((......)))...)))))....)).	chr9:111637121-111637373(-)$1	1	78	118	17.7870
(.(.(((((.((.(((......))).)).).))))).)))	chr1:11115022-11115268(-)$1	1	178	218	16.2849
(.(((..((((((((((...)))....)))))))..))).	chr11:129747084-129747389(-)$1	1	188	228	14.0374
(((((..(((...((((......)))))))..)))))))(	chr2:74682504-74682781(+)$1	1	12	52	15.6481
.(((((((..((.(((......)))..)).))))))).))	chr11:10819262-10819536(-)$1	1	18	58	17.3206

#PSSM
g : 0.17	[ : 0.13	= : 0.08	e : 0.08	i : 0.06	# : 0.06	f : 0.06	c : 0.06	b : 0.04	d : 0.04	+ : 0.04	! : 0.04	" : 0.02	% : 0.02	a : 0.02	h : 0.02	
g : 0.23	e : 0.10	[ : 0.10	= : 0.08	c : 0.08	i : 0.06	# : 0.06	b : 0.06	! : 0.06	d : 0.04	f : 0.02	% : 0.02	a : 0.02	
g : 0.23	c : 0.15	e : 0.13	= : 0.10	b : 0.08	i : 0.06	# : 0.06	d : 0.04	f : 0.02	! : 0.02	% : 0.02	[ : 0.02	a : 0.02	
g : 0.23	c : 0.19	= : 0.13	e : 0.13	i : 0.06	[ : 0.06	b : 0.04	# : 0.04	d : 0.04	f : 0.02	! : 0.02	
g : 0.17	= : 0.13	c : 0.13	! : 0.10	e : 0.10	# : 0.06	d : 0.06	i : 0.04	b : 0.04	[ : 0.04	" : 0.04	f : 0.02	h : 0.02	
! : 0.15	g : 0.10	= : 0.10	" : 0.08	d : 0.08	[ : 0.08	# : 0.06	e : 0.06	c : 0.06	i : 0.04	b : 0.04	f : 0.02	h : 0.02	$ : 0.02	a : 0.02	
! : 0.13	d : 0.13	c : 0.10	= : 0.10	e : 0.08	" : 0.08	[ : 0.08	g : 0.08	# : 0.04	i : 0.04	h : 0.02	$ : 0.02	b : 0.02	a : 0.02	
c : 0.17	e : 0.13	d : 0.10	= : 0.10	! : 0.08	b : 0.08	g : 0.08	# : 0.04	" : 0.04	i : 0.04	$ : 0.04	h : 0.02	[ : 0.02	
c : 0.21	b : 0.15	e : 0.13	= : 0.10	d : 0.08	[ : 0.04	i : 0.04	$ : 0.04	" : 0.04	! : 0.04	# : 0.02	h : 0.02	a : 0.02	g : 0.02	
c : 0.21	e : 0.15	! : 0.13	[ : 0.10	b : 0.08	= : 0.08	d : 0.04	$ : 0.04	" : 0.04	h : 0.02	i : 0.02	f : 0.02	g : 0.02	
" : 0.17	c : 0.17	e : 0.15	! : 0.10	a : 0.08	b : 0.08	[ : 0.06	= : 0.06	h : 0.02	f : 0.02	$ : 0.02	g : 0.02	
e : 0.19	" : 0.17	a : 0.10	c : 0.10	b : 0.10	[ : 0.08	d : 0.04	= : 0.04	! : 0.04	h : 0.02	f : 0.02	$ : 0.02	g : 0.02	
[ : 0.30	" : 0.19	e : 0.13	d : 0.13	! : 0.06	= : 0.04	b : 0.04	c : 0.04	f : 0.02	g : 0.02	
c : 0.36	d : 0.15	b : 0.13	e : 0.10	" : 0.06	= : 0.04	! : 0.04	[ : 0.02	a : 0.02	f : 0.02	g : 0.02	
c : 0.41	b : 0.17	d : 0.17	e : 0.08	[ : 0.04	= : 0.04	" : 0.02	! : 0.02	f : 0.02	
c : 0.41	d : 0.13	b : 0.10	o : 0.10	e : 0.10	= : 0.04	a : 0.04	q : 0.02	r : 0.02	
o : 0.71	c : 0.06	n : 0.04	b : 0.04	d : 0.04	e : 0.02	q : 0.02	= : 0.02	r : 0.02	
o : 0.78	n : 0.04	c : 0.02	m : 0.02	e : 0.02	q : 0.02	= : 0.02	d : 0.02	r : 0.02	l : 0.02	
o : 0.78	m : 0.06	n : 0.04	l : 0.04	e : 0.02	q : 0.02	r : 0.02	
o : 0.78	m : 0.06	n : 0.04	l : 0.04	e : 0.02	q : 0.02	r : 0.02	
o : 0.78	m : 0.06	n : 0.04	l : 0.04	q : 0.02	r : 0.02	c : 0.02	
o : 0.67	b : 0.06	c : 0.06	d : 0.04	m : 0.04	e : 0.02	l : 0.02	q : 0.02	f : 0.02	r : 0.02	
c : 0.41	b : 0.13	d : 0.13	e : 0.08	o : 0.06	= : 0.04	a : 0.04	l : 0.02	q : 0.02	f : 0.02	r : 0.02	
c : 0.39	d : 0.15	b : 0.13	e : 0.13	] : 0.06	= : 0.04	a : 0.02	f : 0.02	r : 0.02	4 : 0.02	
c : 0.34	d : 0.17	e : 0.13	b : 0.13	] : 0.06	3 : 0.04	= : 0.04	f : 0.02	2 : 0.02	4 : 0.02	
] : 0.19	2 : 0.19	e : 0.17	d : 0.13	3 : 0.08	b : 0.06	= : 0.04	4 : 0.04	c : 0.02	a : 0.02	f : 0.02	
e : 0.17	2 : 0.17	3 : 0.10	] : 0.10	b : 0.08	4 : 0.08	a : 0.08	c : 0.04	= : 0.04	d : 0.04	h : 0.02	f : 0.02	
e : 0.19	c : 0.19	b : 0.13	4 : 0.13	] : 0.06	a : 0.06	3 : 0.06	= : 0.04	h : 0.02	i : 0.02	2 : 0.02	d : 0.02	g : 0.02	
c : 0.19	e : 0.17	4 : 0.17	b : 0.10	] : 0.10	3 : 0.06	= : 0.04	2 : 0.04	h : 0.02	i : 0.02	d : 0.02	g : 0.02	
c : 0.23	e : 0.17	4 : 0.15	= : 0.10	b : 0.06	] : 0.06	3 : 0.04	d : 0.04	h : 0.02	i : 0.02	2 : 0.02	a : 0.02	g : 0.02	
] : 0.17	e : 0.15	4 : 0.13	c : 0.10	= : 0.10	2 : 0.08	d : 0.08	3 : 0.04	i : 0.04	g : 0.04	h : 0.02	
c : 0.23	e : 0.13	d : 0.13	= : 0.10	2 : 0.08	4 : 0.06	i : 0.06	g : 0.06	f : 0.02	h : 0.02	] : 0.02	a : 0.02	b : 0.02	
c : 0.17	= : 0.13	b : 0.13	d : 0.13	g : 0.10	i : 0.08	] : 0.08	4 : 0.04	e : 0.04	f : 0.02	h : 0.02	a : 0.02	
c : 0.15	g : 0.15	= : 0.13	b : 0.13	d : 0.10	i : 0.08	4 : 0.06	a : 0.06	3 : 0.02	f : 0.02	h : 0.02	e : 0.02	] : 0.02	
2 : 0.17	g : 0.15	= : 0.13	4 : 0.10	] : 0.10	i : 0.08	3 : 0.06	d : 0.06	e : 0.04	b : 0.04	f : 0.02	
2 : 0.19	g : 0.15	= : 0.10	4 : 0.10	3 : 0.10	i : 0.08	e : 0.06	f : 0.04	b : 0.04	c : 0.04	d : 0.02	a : 0.02	
g : 0.21	i : 0.10	= : 0.10	c : 0.10	4 : 0.08	3 : 0.08	e : 0.08	] : 0.08	f : 0.06	2 : 0.02	b : 0.02	
g : 0.21	c : 0.13	i : 0.10	= : 0.10	e : 0.08	4 : 0.06	f : 0.06	] : 0.06	a : 0.04	3 : 0.04	d : 0.02	b : 0.02	h : 0.02	
g : 0.19	c : 0.17	i : 0.10	e : 0.10	] : 0.10	= : 0.08	f : 0.06	b : 0.06	d : 0.04	3 : 0.02	h : 0.02	
c : 0.17	g : 0.15	e : 0.10	i : 0.08	f : 0.08	] : 0.08	= : 0.06	b : 0.06	3 : 0.04	d : 0.04	4 : 0.02	F : 0.02	h : 0.02	D : 0.02	

#score	741.0014075763954
#seq	46
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_CDS_m2_run2.txt

#BEAR
[ccc!!ddddllldddd22ccc	chr8:30938619-30938886(+)$1	267	149	171	10.0554
iiiiiicccmmmmcccdddd""	chr20:32681408-32681637(-)$1	229	85	107	7.7657
ddd"""ddddllldddd22ddd	chr17:65900716-65900974(+)$1	258	147	169	9.7879
a[cccddddmmmmdddd]ccc]	chrM:9856-10085(+)$1	229	110	132	10.6133
d[bb[cccooooooccc22bb]	chrM:14224-14452(-)$1	228	88	110	8.5008
bb"""ddddnnnnndddd4444	chr6:87970248-87970555(+)$1	307	51	73	8.6023
cc"""ddddllldddd333ccc	chr7:77378758-77379101(+)$1	343	102	124	11.1736
cc"""ddddmmmmdddd]ccc:	chr21:34921813-34922083(+)$1	270	116	138	10.6113
d"""eeeeemmmmeeeee333d	chr12:46357788-46358061(-)$1	273	85	107	8.9057
dddd!!cccmmmmccc4444dd	chr11:62294319-62294593(-)$1	274	135	157	9.1617
ee[ddddoooooodddd333ee	chrM:12643-12853(+)$1	210	131	153	10.1359
d[bb[cccooooooccc22bb]	chrM:14203-14424(-)$1	221	60	82	8.5008
[ccc[ddddllldddd]cccbb	chr7:26233143-26233355(-)$1	212	42	64	8.8450
dd"""ddddllldddd333ddd	chr1:22033182-22033428(-)$1	246	120	142	10.8180
ggggggcccmmmmccc]ggggg	chr7:91624922-91625176(+)$1	254	155	177	8.4047
cc####aooooooa4444cccd	chr1:39800589-39800871(+)$1	282	214	236	8.6011
[a!!bbddddllldddd]bb22	chr5:70806029-70806277(+)$1	248	113	135	8.0799
f[bb!!cccmmmmccc4444bb	chrM:14252-14487(-)$1	235	19	41	8.8392
dddd[ddddmmmmdddd22ddd	chr21:38528976-38529280(+)$1	304	252	274	10.4487
a[cccddddmmmmdddd]ccc]	chrM:9790-10002(+)$1	212	176	198	10.6133
b"""eeeeemmmmeeeee333b	chr1:165723364-165723613(-)$1	249	89	111	8.5092
a!!ddddoooooodddd22add	chr2:55253846-55254193(-)$1	347	159	181	10.0244
ee"""ddddllldddd333eee	chr5:10264737-10265057(+)$1	320	108	130	10.9112
gggggcccooooooccc]gggg	chr1:214816305-214816544(+)$1	239	2	24	8.4139
dd!!eeeeemmmmeeeee22dd	chr7:158485905-158486185(-)$1	280	204	226	8.1357
ee"""ddddnnnnnddddeeee	chr3:37365765-37366020(+)$1	255	169	191	8.4670
ee[ddddoooooodddd333ee	chrM:12653-12861(+)$1	208	121	143	10.1359
cc!!eeeeemmmmeeeee22cc	chr3:180665551-180665818(+)$1	267	123	145	8.3409
eeee[ddddmmmmdddd]eeee	chr2:187368820-187369039(+)$1	219	145	167	9.9396
=====[cccmmmmccc]=====	chrM:14367-14602(-)$1	235	107	129	9.1749
ddd!!ddddmmmmdddd22ddd	chr7:91623834-91624063(+)$1	229	40	62	10.9100
eeeee[cccmmmmccceeeeeg	chr12:6692404-6692644(-)$1	240	47	69	7.5446
f####ddddoooooodddd]ff	chr6:35837484-35837745(-)$1	261	165	187	9.2000
ggg[acccnnnnnccc]a]ggg	chr12:6690356-6690607(-)$1	251	41	63	7.1161
hhhh[ddddmmmmddddhhhhh	chrM:14416-14644(-)$1	228	15	37	8.6510
gggggcccooooooccc22ggg	chr21:40571099-40571412(-)$1	313	47	69	8.8794
ee[ddddoooooodddd333ee	chrM:12622-12843(+)$1	221	152	174	10.1359
c####ddddoooooodddd333	chr17:62498186-62498441(-)$1	255	27	49	9.8349
Feeeeeddddllldddd]eeee	chr12:122995555-122995760(-)$1	205	177	199	7.7933
eeeee[cccmmmmccc22eeee	chr15:44063202-44063416(+)$1	214	126	148	7.9792
ee[ddddoooooodddd333ee	chrM:12661-12887(+)$1	226	113	135	10.1359
=========lll==========	chr11:62293185-62293427(-)$1	242	170	192	7.9141
d####cccoooooocccdddd]	chr11:62298842-62299120(-)$1	278	184	206	8.6824
a[cccddddmmmmdddd]ccc]	chrM:9802-10037(+)$1	235	164	186	10.6133
dddd####aooooooa333ddd	chr4:13605609-13605939(-)$1	330	92	114	7.6752
"""ccccccmmmmccc]cccbb	chrM:9885-10090(+)$1	205	64	86	8.4171
ii"""ddddmmmmdddd22iii	chr2:190339931-190340257(+)$1	326	250	272	11.9852
d####ddddmmmmdddd66666	chr12:21789969-21790229(-)$1	260	85	107	9.0513
cc"""ddddllldddd]ccc22	chr16:8997030-8997358(-)$1	328	239	261	9.6902
[ccc[ddddllldddd]cccbb	chr7:26233155-26233376(-)$1	221	63	85	8.8450
ggg!!ddddmmmmdddd22ggg	chr12:46320163-46320474(-)$1	311	229	251	11.4544
a[cccddddmmmmdddd]ccc]	chrM:9842-10050(+)$1	208	124	146	10.6133
b!!a!!cccmmmmccc22a22b	chr7:91643462-91643696(+)$1	234	21	43	9.0869
ggggg[cccmmmmcccgggggg	chr4:68383826-68384144(-)$1	318	66	88	8.3394
hhhh[ddddmmmmddddhhhhh	chrM:14452-14671(-)$1	219	42	64	8.6510
a[cccddddmmmmdddd]ccc]	chrM:9850-10056(+)$1	206	116	138	10.6133

#otherMatches

#Seq PSSM
CUCAGGAAGAAUAUCUUAGUGA	chr8:30938619-30938886(+)$1	267	149	171	10.0554
UGAUUUUCUUUUUAGAUUACAU	chr20:32681408-32681637(-)$1	229	85	107	7.7657
GUUGGAGCUGGAUUAGUAAAAC	chr17:65900716-65900974(+)$1	258	147	169	9.7879
GUCUCCAUCUAUUGAUGAGGGU	chrM:9856-10085(+)$1	229	110	132	10.6133
UGUGGGUGAAAGAGUAUGAUGG	chrM:14224-14452(-)$1	228	88	110	8.5008
CCAAGCACAGCAGAUGUGGAAA	chr6:87970248-87970555(+)$1	307	51	73	8.6023
CUAUUCAGACCAUCUGCUCAGG	chr7:77378758-77379101(+)$1	343	102	124	11.1736
ACAGCCAGAAGAAUCUGAGUCA	chr21:34921813-34922083(+)$1	270	116	138	10.6113
UAUAGGAAACCCUUUUCCAAAG	chr12:46357788-46358061(-)$1	273	85	107	8.9057
GGUAGAAGGUAAACUUGAAGUA	chr11:62294319-62294593(-)$1	274	135	157	9.1617
CGUAGGAAUUAUAUCCUUCUUG	chrM:12643-12853(+)$1	210	131	153	10.1359
UGUGGGUGAAAGAGUAUGAUGG	chrM:14203-14424(-)$1	221	60	82	8.5008
UGGCAAUUUUGGAGGUAGCCCC	chr7:26233143-26233355(-)$1	212	42	64	8.8450
AGCAAACUGCAGCAGUACUUUC	chr1:22033182-22033428(-)$1	246	120	142	10.8180
UAGUUUCUUGCAAGAGAAAAUU	chr7:91624922-91625176(+)$1	254	155	177	8.4047
GUGCAAGGAUCAACGUAAGCCA	chr1:39800589-39800871(+)$1	282	214	236	8.6011
GGAAGACACCAGAGGUGAUUGA	chr5:70806029-70806277(+)$1	248	113	135	8.0799
UACUACAGCGAUGGCUAUUGAG	chrM:14252-14487(-)$1	235	19	41	8.8392
CUUAUAUUACAUUUAAUCUUAA	chr21:38528976-38529280(+)$1	304	252	274	10.4487
GUCUCCAUCUAUUGAUGAGGGU	chrM:9790-10002(+)$1	212	176	198	10.6133
UAAUUCUUUGCAGAGAGACAAG	chr1:165723364-165723613(-)$1	249	89	111	8.5092
GAAGAUAGUGAUAUGUUGGCUG	chr2:55253846-55254193(-)$1	347	159	181	10.0244
UGAUUUUGAAGAUUGAUGACAU	chr5:10264737-10265057(+)$1	320	108	130	10.9112
UCGGCCCCAGCGAAGGGUGUUG	chr1:214816305-214816544(+)$1	239	2	24	8.4139
AAUAAGAAACGUUUUUCUCUUU	chr7:158485905-158486185(-)$1	280	204	226	8.1357
GUACUGAGUUAGAUGCUCACAA	chr3:37365765-37366020(+)$1	255	169	191	8.4670
CGUAGGAAUUAUAUCCUUCUUG	chrM:12653-12861(+)$1	208	121	143	10.1359
AAGAGCCAUGUGGGUGGUGGUU	chr3:180665551-180665818(+)$1	267	123	145	8.3409
UAAAAACUGAAAGCAGUAUUUA	chr2:187368820-187369039(+)$1	219	145	167	9.9396
AGGGGGAAUGAUGGUUGUCUUU	chrM:14367-14602(-)$1	235	107	129	9.1749
GUUACCUGUAAUAAUAGUCAAU	chr7:91623834-91624063(+)$1	229	40	62	10.9100
GCUGGUGGUGCUGACUUCAGCA	chr12:6692404-6692644(-)$1	240	47	69	7.5446
AAUUAUACUCAGAACAGUAAUA	chr6:35837484-35837745(-)$1	261	165	187	9.2000
AUUGUUCUGCAGAAGAUGGGAU	chr12:6690356-6690607(-)$1	251	41	63	7.1161
UUUGUGGGGUUUUCUUCUAAGC	chrM:14416-14644(-)$1	228	15	37	8.6510
GAAGCUGCCUCACCGCAAUGCU	chr21:40571099-40571412(-)$1	313	47	69	8.8794
CGUAGGAAUUAUAUCCUUCUUG	chrM:12622-12843(+)$1	221	152	174	10.1359
CCAAAAGUGGUCAAGCACUGGA	chr17:62498186-62498441(-)$1	255	27	49	9.8349
ugcucugucauucugacuggag	chr12:122995555-122995760(-)$1	205	177	199	7.7933
UAGCUAUCUACAAAGAGAAGCU	chr15:44063202-44063416(+)$1	214	126	148	7.9792
CGUAGGAAUUAUAUCCUUCUUG	chrM:12661-12887(+)$1	226	113	135	10.1359
AUUGAUGUCCCAGAUGUUAAUG	chr11:62293185-62293427(-)$1	242	170	192	7.9141
CCAGAUGUUGAAAUGCAGGGUC	chr11:62298842-62299120(-)$1	278	184	206	8.6824
GUCUCCAUCUAUUGAUGAGGGU	chrM:9802-10037(+)$1	235	164	186	10.6133
GUUCACAAGGAGAAACGACGAA	chr4:13605609-13605939(-)$1	330	92	114	7.6752
UUUGACUAUUUCUGUAUGUCUC	chrM:9885-10090(+)$1	205	64	86	8.4171
UGAUUGUAUGUUGAUAUUCUAA	chr2:190339931-190340257(+)$1	326	250	272	11.9852
UUAUAAUUUUUUUAAGUGCCUA	chr12:21789969-21790229(-)$1	260	85	107	9.0513
UACCGGUCCCGUGGAUAUACCC	chr16:8997030-8997358(-)$1	328	239	261	9.6902
UGGCAAUUUUGGAGGUAGCCCC	chr7:26233155-26233376(-)$1	221	63	85	8.8450
GAGGCACUUACAGAAGUAGUUU	chr12:46320163-46320474(-)$1	311	229	251	11.4544
GUCUCCAUCUAUUGAUGAGGGU	chrM:9842-10050(+)$1	208	124	146	10.6133
AGUUGAAACAUAAGUUAAAUAU	chr7:91643462-91643696(+)$1	234	21	43	9.0869
UUGAUGAUAAAGUUAUGUUAAA	chr4:68383826-68384144(-)$1	318	66	88	8.3394
UUUGUGGGGUUUUCUUCUAAGC	chrM:14452-14671(-)$1	219	42	64	8.6510
GUCUCCAUCUAUUGAUGAGGGU	chrM:9850-10056(+)$1	206	116	138	10.6133

#DB
.(((..((((...))))..)))	chr8:30938619-30938886(+)$1	1	149	171	10.0554
))))))(((....)))((((..	chr20:32681408-32681637(-)$1	1	85	107	7.7657
(((...((((...))))..)))	chr17:65900716-65900974(+)$1	1	147	169	9.7879
(.(((((((....)))).))).	chrM:9856-10085(+)$1	1	110	132	10.6133
(.((.(((......)))..)).	chrM:14224-14452(-)$1	1	88	110	8.5008
((...((((.....))))....	chr6:87970248-87970555(+)$1	1	51	73	8.6023
((...((((...))))...)))	chr7:77378758-77379101(+)$1	1	102	124	11.1736
((...((((....)))).))).	chr21:34921813-34922083(+)$1	1	116	138	10.6113
(...(((((....)))))...)	chr12:46357788-46358061(-)$1	1	85	107	8.9057
((((..(((....)))....))	chr11:62294319-62294593(-)$1	1	135	157	9.1617
((.((((......))))...))	chrM:12643-12853(+)$1	1	131	153	10.1359
(.((.(((......)))..)).	chrM:14203-14424(-)$1	1	60	82	8.5008
.(((.((((...)))).)))))	chr7:26233143-26233355(-)$1	1	42	64	8.8450
((...((((...))))...)))	chr1:22033182-22033428(-)$1	1	120	142	10.8180
(((((((((....))).)))))	chr7:91624922-91625176(+)$1	1	155	177	8.4047
((....(......)....)))(	chr1:39800589-39800871(+)$1	1	214	236	8.6011
.(..((((((...)))).))..	chr5:70806029-70806277(+)$1	1	113	135	8.0799
(.((..(((....)))....))	chrM:14252-14487(-)$1	1	19	41	8.8392
((((.((((....))))..)))	chr21:38528976-38529280(+)$1	1	252	274	10.4487
(.(((((((....)))).))).	chrM:9790-10002(+)$1	1	176	198	10.6133
(...(((((....)))))...)	chr1:165723364-165723613(-)$1	1	89	111	8.5092
(..((((......))))..)((	chr2:55253846-55254193(-)$1	1	159	181	10.0244
((...((((...))))...)))	chr5:10264737-10265057(+)$1	1	108	130	10.9112
((((((((......))).))))	chr1:214816305-214816544(+)$1	1	2	24	8.4139
((..(((((....)))))..))	chr7:158485905-158486185(-)$1	1	204	226	8.1357
((...((((.....))))))))	chr3:37365765-37366020(+)$1	1	169	191	8.4670
((.((((......))))...))	chrM:12653-12861(+)$1	1	121	143	10.1359
((..(((((....)))))..))	chr3:180665551-180665818(+)$1	1	123	145	8.3409
((((.((((....)))).))))	chr2:187368820-187369039(+)$1	1	145	167	9.9396
(((((.(((....))).)))))	chrM:14367-14602(-)$1	1	107	129	9.1749
(((..((((....))))..)))	chr7:91623834-91624063(+)$1	1	40	62	10.9100
(((((.(((....)))))))))	chr12:6692404-6692644(-)$1	1	47	69	7.5446
(....((((......)))).))	chr6:35837484-35837745(-)$1	1	165	187	9.2000
(((.((((.....))).).)))	chr12:6690356-6690607(-)$1	1	41	63	7.1161
((((.((((....)))))))))	chrM:14416-14644(-)$1	1	15	37	8.6510
((((((((......)))..)))	chr21:40571099-40571412(-)$1	1	47	69	8.8794
((.((((......))))...))	chrM:12622-12843(+)$1	1	152	174	10.1359
(....((((......))))...	chr17:62498186-62498441(-)$1	1	27	49	9.8349
)(((((((((...)))).))))	chr12:122995555-122995760(-)$1	1	177	199	7.7933
(((((.(((....)))..))))	chr15:44063202-44063416(+)$1	1	126	148	7.9792
((.((((......))))...))	chrM:12661-12887(+)$1	1	113	135	10.1359
(((((((((...))))))))))	chr11:62293185-62293427(-)$1	1	170	192	7.9141
(....(((......))))))).	chr11:62298842-62299120(-)$1	1	184	206	8.6824
(.(((((((....)))).))).	chrM:9802-10037(+)$1	1	164	186	10.6133
((((....(......)...)))	chr4:13605609-13605939(-)$1	1	92	114	7.6752
...((((((....))).)))))	chrM:9885-10090(+)$1	1	64	86	8.4171
((...((((....))))..)))	chr2:190339931-190340257(+)$1	1	250	272	11.9852
(....((((....)))).....	chr12:21789969-21790229(-)$1	1	85	107	9.0513
((...((((...)))).)))..	chr16:8997030-8997358(-)$1	1	239	261	9.6902
.(((.((((...)))).)))))	chr7:26233155-26233376(-)$1	1	63	85	8.8450
(((..((((....))))..)))	chr12:46320163-46320474(-)$1	1	229	251	11.4544
(.(((((((....)))).))).	chrM:9842-10050(+)$1	1	124	146	10.6133
(..(..(((....)))..)..)	chr7:91643462-91643696(+)$1	1	21	43	9.0869
(((((.(((....)))))))))	chr4:68383826-68384144(-)$1	1	66	88	8.3394
((((.((((....)))))))))	chrM:14452-14671(-)$1	1	42	64	8.6510
(.(((((((....)))).))).	chrM:9850-10056(+)$1	1	116	138	10.6133

#PSSM
d : 0.21	e : 0.16	a : 0.10	c : 0.10	g : 0.10	[ : 0.07	b : 0.05	i : 0.03	f : 0.03	= : 0.03	h : 0.03	F : 0.01	" : 0.01	
e : 0.17	c : 0.14	[ : 0.14	d : 0.12	g : 0.10	# : 0.07	" : 0.05	i : 0.03	! : 0.03	= : 0.03	h : 0.03	b : 0.01	a : 0.01	
" : 0.19	c : 0.14	g : 0.10	d : 0.08	# : 0.08	! : 0.08	[ : 0.07	e : 0.07	b : 0.05	= : 0.03	h : 0.03	i : 0.01	
" : 0.19	c : 0.16	d : 0.14	# : 0.08	! : 0.08	g : 0.07	e : 0.07	b : 0.05	= : 0.03	h : 0.03	i : 0.01	[ : 0.01	a : 0.01	
" : 0.16	[ : 0.14	e : 0.12	! : 0.10	c : 0.10	# : 0.10	d : 0.08	g : 0.07	= : 0.03	i : 0.01	b : 0.01	a : 0.01	
d : 0.51	c : 0.12	e : 0.08	! : 0.07	[ : 0.07	# : 0.03	i : 0.01	" : 0.01	g : 0.01	b : 0.01	= : 0.01	
d : 0.58	c : 0.28	e : 0.07	a : 0.01	= : 0.01	# : 0.01	
d : 0.49	c : 0.28	o : 0.10	e : 0.07	= : 0.01	# : 0.01	
d : 0.49	o : 0.19	c : 0.17	e : 0.07	n : 0.01	= : 0.01	a : 0.01	
m : 0.49	o : 0.24	l : 0.12	d : 0.07	n : 0.05	
m : 0.49	o : 0.24	l : 0.19	n : 0.05	
m : 0.49	o : 0.24	l : 0.19	n : 0.05	
m : 0.49	o : 0.24	d : 0.10	l : 0.07	n : 0.05	= : 0.01	
d : 0.51	c : 0.19	o : 0.14	e : 0.07	n : 0.03	a : 0.01	= : 0.01	
d : 0.55	c : 0.28	e : 0.07	o : 0.05	4 : 0.01	= : 0.01	
d : 0.58	c : 0.28	e : 0.07	4 : 0.01	= : 0.01	a : 0.01	
d : 0.49	] : 0.12	c : 0.08	e : 0.08	3 : 0.07	4 : 0.05	2 : 0.03	= : 0.01	g : 0.01	
2 : 0.21	] : 0.17	3 : 0.14	d : 0.10	e : 0.08	c : 0.07	4 : 0.05	g : 0.03	= : 0.03	h : 0.03	a : 0.01	6 : 0.01	
2 : 0.21	c : 0.19	3 : 0.17	e : 0.08	d : 0.07	4 : 0.05	g : 0.05	= : 0.03	h : 0.03	b : 0.01	] : 0.01	6 : 0.01	a : 0.01	
c : 0.23	d : 0.12	3 : 0.12	g : 0.10	e : 0.10	b : 0.05	4 : 0.05	2 : 0.05	= : 0.03	h : 0.03	a : 0.01	] : 0.01	i : 0.01	6 : 0.01	
c : 0.17	e : 0.17	d : 0.16	b : 0.10	g : 0.10	3 : 0.05	2 : 0.05	= : 0.03	h : 0.03	" : 0.01	4 : 0.01	f : 0.01	i : 0.01	6 : 0.01	
d : 0.17	e : 0.16	] : 0.14	g : 0.12	b : 0.10	c : 0.05	2 : 0.03	= : 0.03	h : 0.03	" : 0.01	4 : 0.01	: : 0.01	f : 0.01	3 : 0.01	i : 0.01	6 : 0.01	

#score	520.3322566519298
#seq	56
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_transcript_m3_run1.txt

#BEAR
fff!!ffffffnnnnnffffff33	chr5:150400066-150400341(+)$1	275	21	45	12.2083
gg!!gggggggnnnnnggggggg2	chr6:170863357-170863610(+)$1	253	23	47	14.3741
[bb!!dddd[annnnna]dddd22	chr11:47587032-47587328(+)$1	296	263	287	11.1459
c!!ffffff[annnnna]ffffff	chr20:61287632-61287950(+)$1	318	117	141	12.8307
cceeeee[cccnnnnnccc]eeee	chr13:96329318-96329585(+)$1	267	65	89	12.3878
]cccgggggggnnnnngggggggd	chr6:142623323-142623560(+)$1	237	42	66	13.6675
:ffffff[cccnnnnncccfffff	chr11:68035491-68035776(-)$1	285	8	32	11.5633
hhhhhhh[abbnnnnnbb]a]hhh	chr5:180219970-180220198(-)$1	228	198	222	12.1464
"""ccc"""bbnnnnnbb]ccc]f	chr1:44019091-44019342(+)$1	251	142	166	13.1005
HHiiiiiiiiinnnnniiiiiiii	chr6:43096749-43097026(+)$1	277	143	167	13.3663
dd!!gggggggnnnnngggggggd	chr5:109025885-109026142(+)$1	257	181	205	14.1076
dddd[ffffffnnnnnffffffdd	chr1:42846384-42846678(+)$1	294	14	38	11.5571
dd!!gggggggnnnnngggggggd	chr20:23618299-23618557(-)$1	258	110	134	14.1076
::iiiiiiiiinnnnniiiiiiii	chr15:45879523-45879792(+)$1	269	192	216	12.8482
ggggggg[cccnnnnnccc]gggg	chr7:5327339-5327601(+)$1	262	24	48	14.1272
dd[gggggggooooooggggggg3	chr3:79068306-79068551(-)$1	245	161	185	9.9847
eeeeeccc[bbnnnnnbbccc22e	chr1:95392462-95392799(-)$1	337	51	75	12.0368
ccc!!ffffffnnnnnffffff44	chr1:62784923-62785174(-)$1	251	193	217	12.3703
==========oooooo========	chr17:27717281-27717529(+)$1	248	108	132	10.7059
cccdddd[cccnnnnncccdddd3	chr17:16256409-16256653(-)$1	244	67	91	11.7748
iiiiiiiii[annnnna]iiiiii	chr13:113783665-113783899(+)$1	234	156	180	14.8158
[bb[ccc[cccnnnnnccc]ccc]	chr10:101945560-101945815(-)$1	255	29	53	13.1483
ddccc[bb[bbnnnnnbb]bb]cc	chr2:223725658-223725887(+)$1	229	102	126	12.1110
ffff[ccccccnnnnnccc333cc	chr17:55333796-55334054(+)$1	258	150	174	12.5815
dddd[ccc[bbnnnnnbbcccddd	chr2:219646807-219647111(+)$1	304	83	107	12.3120
a[ccc[eeeeennnnneeeee]cc	chr17:7210820-7211075(+)$1	255	22	46	11.4790
eeeee[a!!bbnnnnnbb]a]eee	chr22:19950074-19950318(+)$1	244	83	107	12.6229
ggg[gggggggnnnnnggggggg2	chr19:14682651-14682922(-)$1	271	45	69	14.2816
g==========nnnnn========	chr18:9117735-9117953(+)$1	218	137	161	15.1492
ddggggggg[annnnna]gggggg	chr19:45368615-45368844(+)$1	229	199	223	14.3514
ccceeeeebbannnnna]bb]eee	chr22:19109539-19109779(-)$1	240	101	125	11.5849
===========oooooo=======	chr6:170102166-170102469(+)$1	303	195	219	10.6733
gg[ffffffbbnnnnnbb]fffff	chr2:120980570-120980826(-)$1	256	77	101	12.8702
d"""gggggggnnnnnggggggg]	chr2:20550256-20550514(-)$1	258	110	134	14.3026
"""gggggggannnnna]gggggg	chr1:225615554-225615793(-)$1	239	38	62	14.4849
dd[hhhhhhhhnnnnnhhhhhhhh	chr7:92465690-92465988(-)$1	298	13	37	11.3698
[a[ccc[ddddnnnnnddddccc]	chr13:103452665-103452955(+)$1	290	70	94	11.6159
B:gggggggbbnnnnnbb]ggggg	chr15:65667516-65667802(-)$1	286	161	185	12.5844
dddeeeee[bbnnnnnbb]eeeee	chr4:493114-493375(+)$1	261	104	128	12.1281
[ccc!!eeeeennnnneeeeeccc	chr20:62655869-62656142(+)$1	273	100	124	11.6127
===========nnnnn========	chr11:64018910-64019236(+)$1	326	17	41	15.1745
G:a[gggggggnnnnnggggggg]	chr3:15106550-15106888(-)$1	338	93	117	12.9020
===========nnnnn========	chr6:116892511-116892836(+)$1	325	161	185	15.1745
gggggg[a[bbnnnnnbb]a]ggg	chr22:30970350-30970670(-)$1	320	108	132	14.0329
ddd[ccc!!bbnnnnnbb22ccc2	chr9:6645428-6645736(-)$1	308	68	92	12.7276
dd!!bb!!cccnnnnnccc22bb4	chr11:57102560-57102815(-)$1	255	216	240	11.7126
iiiiiiiii[annnnna]iiiiii	chr15:81281902-81282174(-)$1	272	62	86	14.8158
!!ffffff[bbnnnnnbb]fffff	chr15:69747491-69747726(+)$1	235	126	150	12.8762
iiiiiiiii[annnnna]iiiiii	chr6:30710254-30710496(-)$1	242	35	59	14.8158
gg[ffffffbbnnnnnbb]fffff	chr2:120980476-120980770(-)$1	294	21	45	12.8702
eeee[ccccccnnnnnccc]ccc]	chr6:42981903-42982185(+)$1	282	170	194	12.9345
cciiiiiiiiinnnnniiiiiiii	chr6:53409382-53409618(-)$1	236	77	101	14.6641
:==========nnnnn========	chr7:2702505-2702739(+)$1	234	104	128	14.2406

#otherMatches

#Seq PSSM
CGGCUUGGCCGCGGAUUGGUCACA	chr5:150400066-150400341(+)$1	275	21	45	12.2083
GCCCUAGUGGGAGCAACUCGCUGA	chr6:170863357-170863610(+)$1	253	23	47	14.3741
UCGACCCCACCGUGCUGCUGGGCG	chr11:47587032-47587328(+)$1	296	263	287	11.1459
UGAGGCCACUCCCACUGCGUGGCU	chr20:61287632-61287950(+)$1	318	117	141	12.8307
CUGGGCUCCAGAGCCACUGAGGCC	chr13:96329318-96329585(+)$1	267	65	89	12.3878
GGGCGCCUGGGUUCCCCCUGGGUG	chr6:142623323-142623560(+)$1	237	42	66	13.6675
UUUCCUUCAUGCCUUUCAUAAGGA	chr11:68035491-68035776(-)$1	285	8	32	11.5633
CUGGCCUGCCCUCCCCGGUGGGGG	chr5:180219970-180220198(-)$1	228	198	222	12.1464
CAAGCUACAGGAGAACCCAAGCCG	chr1:44019091-44019342(+)$1	251	142	166	13.1005
CUUUGCAGCUGUGGACCGGCUGCA	chr6:43096749-43097026(+)$1	277	143	167	13.3663
GCUGUCUCCUUUGGCUGAGGAGAG	chr5:109025885-109026142(+)$1	257	181	205	14.1076
GCUGAUUGGCUGGCGGGGCCGACG	chr1:42846384-42846678(+)$1	294	14	38	11.5571
CCCUGGCCGUGAGCCCCGCGGCCG	chr20:23618299-23618557(-)$1	258	110	134	14.1076
GACGCCUGGUACGUACUAUCGGGU	chr15:45879523-45879792(+)$1	269	192	216	12.8482
uuuaugggucagugcaugagccau	chr7:5327339-5327601(+)$1	262	24	48	14.1272
UUAGGGGUGCCUGCGAGCGCCCCA	chr3:79068306-79068551(-)$1	245	161	185	9.9847
GGGCCCGGCGGCCAAUCCUCGAAG	chr1:95392462-95392799(-)$1	337	51	75	12.0368
GCCAGGGCCGAGACCGUCGGCCAG	chr1:62784923-62785174(-)$1	251	193	217	12.3703
CCGGGCUCUGUGGCUUCAGGGCUC	chr17:27717281-27717529(+)$1	248	108	132	10.7059
GCCGCCGUCGGAGAAGCCGCGGCU	chr17:16256409-16256653(-)$1	244	67	91	11.7748
UCCUUUCUUGAAGAGAUGAAGAAA	chr13:113783665-113783899(+)$1	234	156	180	14.8158
GUUGGCGGCGGUUGGCUCGGCGCG	chr10:101945560-101945815(-)$1	255	29	53	13.1483
GCUGUGGCUGCGCCGGGCUGCGAC	chr2:223725658-223725887(+)$1	229	102	126	12.1110
CUCCGCCGCUCGCAGAGAGAUUCG	chr17:55333796-55334054(+)$1	258	150	174	12.5815
GCGCGAGCACAACCCAUGGCUGCG	chr2:219646807-219647111(+)$1	304	83	107	12.3120
UGUGCGCUUGCGCAGUGCGGGGGU	chr17:7210820-7211075(+)$1	255	22	46	11.4790
GGCUGGAACGAGUUCAUCCUGCAG	chr22:19950074-19950318(+)$1	244	83	107	12.6229
UCAGUGGUUCCGGGUAGGAGCUAG	chr19:14682651-14682922(-)$1	271	45	69	14.2816
AAAAUGGAGCUGGAGGAGCUUUAU	chr18:9117735-9117953(+)$1	218	137	161	15.1492
GCCCUCCACGGGCUCACGGUGGAG	chr19:45368615-45368844(+)$1	229	199	223	14.3514
CCUGCUCGUGCUCACUGUCACCGA	chr22:19109539-19109779(-)$1	240	101	125	11.5849
GGGGGAGGGGUUAACCCACCCCUC	chr6:170102166-170102469(+)$1	303	195	219	10.6733
GGCCACGUGACCGCGCGUGCACGU	chr2:120980570-120980826(-)$1	256	77	101	12.8702
CCAACGGUCGGUGUCCCCGGCUGA	chr2:20550256-20550514(-)$1	258	110	134	14.3026
AGAGCGCGGCCGGGUAGCGUCGCG	chr1:225615554-225615793(-)$1	239	38	62	14.4849
cgcgggcggcgcccUCCGCCGUCC	chr7:92465690-92465988(-)$1	298	13	37	11.3698
GCGAGGAGGCCUCGGCGGCCCUUG	chr13:103452665-103452955(+)$1	290	70	94	11.6159
CCCCUCCAGUGCGAAUCACCUGGA	chr15:65667516-65667802(-)$1	286	161	185	12.5844
UUCGUUCCUCUGCCAGAGCGGAAC	chr4:493114-493375(+)$1	261	104	128	12.1281
GGCUCAUGGGCGCCAAGUCCAAGU	chr20:62655869-62656142(+)$1	273	100	124	11.6127
GGGGCGGGGCCCGGGAGgccccgc	chr11:64018910-64019236(+)$1	326	17	41	15.1745
GAAGCCGCGUGAGAUCCGCGCGGG	chr3:15106550-15106888(-)$1	338	93	117	12.9020
GCGCGGCAGCUGUCUGGGCUGCUG	chr6:116892511-116892836(+)$1	325	161	185	15.1745
CCUGGUGGAgcggggggcccggcc	chr22:30970350-30970670(-)$1	320	108	132	14.0329
CGCAGCGCCCAUUCAUUGCCCGCG	chr9:6645428-6645736(-)$1	308	68	92	12.7276
CGACAUGGCAGAGACACUGGAGUU	chr11:57102560-57102815(-)$1	255	216	240	11.7126
GCGCAAGGCCGUGGUCCUGCUUUG	chr15:81281902-81282174(-)$1	272	62	86	14.8158
CUGCUCCAGGUAGGAAACAUGGAG	chr15:69747491-69747726(+)$1	235	126	150	12.8762
UCUGCCGCAGCAACGGGGUGCGGC	chr6:30710254-30710496(-)$1	242	35	59	14.8158
GGCCACGUGACCGCGCGUGCACGU	chr2:120980476-120980770(-)$1	294	21	45	12.8702
CUCGGCCUGGCAGGUAGCCUGGGA	chr6:42981903-42982185(+)$1	282	170	194	12.9345
GGCAGCCGCCUUCUGCGGGCGGCU	chr6:53409382-53409618(-)$1	236	77	101	14.6641
GGACUGAGGUCCCUGUGGCCUCGG	chr7:2702505-2702739(+)$1	234	104	128	14.2406

#DB
(((..((((((.....))))))..	chr5:150400066-150400341(+)$1	1	21	45	12.2083
((..(((((((.....))))))).	chr6:170863357-170863610(+)$1	1	23	47	14.3741
.((..((((.(.....).))))..	chr11:47587032-47587328(+)$1	1	263	287	11.1459
(..((((((.(.....).))))))	chr20:61287632-61287950(+)$1	1	117	141	12.8307
(((((((.(((.....))).))))	chr13:96329318-96329585(+)$1	1	65	89	12.3878
.)))(((((((.....)))))))(	chr6:142623323-142623560(+)$1	1	42	66	13.6675
.((((((.(((.....))))))))	chr11:68035491-68035776(-)$1	1	8	32	11.5633
(((((((.(((.....)).).)))	chr5:180219970-180220198(-)$1	1	198	222	12.1464
...(((...((.....)).))).)	chr1:44019091-44019342(+)$1	1	142	166	13.1005
(((((((((((.....))))))))	chr6:43096749-43097026(+)$1	1	143	167	13.3663
((..(((((((.....))))))))	chr5:109025885-109026142(+)$1	1	181	205	14.1076
((((.((((((.....))))))))	chr1:42846384-42846678(+)$1	1	14	38	11.5571
((..(((((((.....))))))))	chr20:23618299-23618557(-)$1	1	110	134	14.1076
..(((((((((.....))))))))	chr15:45879523-45879792(+)$1	1	192	216	12.8482
(((((((.(((.....))).))))	chr7:5327339-5327601(+)$1	1	24	48	14.1272
((.(((((((......))))))).	chr3:79068306-79068551(-)$1	1	161	185	9.9847
((((((((.((.....)))))..)	chr1:95392462-95392799(-)$1	1	51	75	12.0368
(((..((((((.....))))))..	chr1:62784923-62785174(-)$1	1	193	217	12.3703
((((((((((......))))))))	chr17:27717281-27717529(+)$1	1	108	132	10.7059
(((((((.(((.....))))))).	chr17:16256409-16256653(-)$1	1	67	91	11.7748
(((((((((.(.....).))))))	chr13:113783665-113783899(+)$1	1	156	180	14.8158
.((.(((.(((.....))).))).	chr10:101945560-101945815(-)$1	1	29	53	13.1483
(((((.((.((.....)).)).))	chr2:223725658-223725887(+)$1	1	102	126	12.1110
((((.((((((.....)))...))	chr17:55333796-55334054(+)$1	1	150	174	12.5815
((((.(((.((.....))))))))	chr2:219646807-219647111(+)$1	1	83	107	12.3120
(.(((.(((((.....))))).))	chr17:7210820-7211075(+)$1	1	22	46	11.4790
(((((.(..((.....)).).)))	chr22:19950074-19950318(+)$1	1	83	107	12.6229
(((.(((((((.....))))))).	chr19:14682651-14682922(-)$1	1	45	69	14.2816
)((((((((((.....))))))))	chr18:9117735-9117953(+)$1	1	137	161	15.1492
))(((((((.(.....).))))))	chr19:45368615-45368844(+)$1	1	199	223	14.3514
)))((((((((.....).)).)))	chr22:19109539-19109779(-)$1	1	101	125	11.5849
(((((((((((......)))))))	chr6:170102166-170102469(+)$1	1	195	219	10.6733
((.((((((((.....)).)))))	chr2:120980570-120980826(-)$1	1	77	101	12.8702
(...(((((((.....))))))).	chr2:20550256-20550514(-)$1	1	110	134	14.3026
...((((((((.....).))))))	chr1:225615554-225615793(-)$1	1	38	62	14.4849
((.((((((((.....))))))))	chr7:92465690-92465988(-)$1	1	13	37	11.3698
.(.(((.((((.....))))))).	chr13:103452665-103452955(+)$1	1	70	94	11.6159
(.(((((((((.....)).)))))	chr15:65667516-65667802(-)$1	1	161	185	12.5844
((((((((.((.....)).)))))	chr4:493114-493375(+)$1	1	104	128	12.1281
.(((..(((((.....))))))))	chr20:62655869-62656142(+)$1	1	100	124	11.6127
(((((((((((.....))))))))	chr11:64018910-64019236(+)$1	1	17	41	15.1745
(.(.(((((((.....))))))).	chr3:15106550-15106888(-)$1	1	93	117	12.9020
(((((((((((.....))))))))	chr6:116892511-116892836(+)$1	1	161	185	15.1745
((((((.(.((.....)).).)))	chr22:30970350-30970670(-)$1	1	108	132	14.0329
(((.(((..((.....))..))).	chr9:6645428-6645736(-)$1	1	68	92	12.7276
((..((..(((.....)))..)).	chr11:57102560-57102815(-)$1	1	216	240	11.7126
(((((((((.(.....).))))))	chr15:81281902-81282174(-)$1	1	62	86	14.8158
..((((((.((.....)).)))))	chr15:69747491-69747726(+)$1	1	126	150	12.8762
(((((((((.(.....).))))))	chr6:30710254-30710496(-)$1	1	35	59	14.8158
((.((((((((.....)).)))))	chr2:120980476-120980770(-)$1	1	21	45	12.8702
((((.((((((.....))).))).	chr6:42981903-42982185(+)$1	1	170	194	12.9345
(((((((((((.....))))))))	chr6:53409382-53409618(-)$1	1	77	101	14.6641
.((((((((((.....))))))))	chr7:2702505-2702739(+)$1	1	104	128	14.2406

#PSSM
d : 0.22	g : 0.13	c : 0.11	[ : 0.07	= : 0.07	: : 0.05	e : 0.05	i : 0.05	f : 0.03	" : 0.03	] : 0.01	h : 0.01	H : 0.01	a : 0.01	B : 0.01	G : 0.01	! : 0.01	
d : 0.20	c : 0.13	g : 0.11	= : 0.11	f : 0.05	" : 0.05	: : 0.05	e : 0.05	i : 0.05	b : 0.03	! : 0.03	h : 0.01	H : 0.01	[ : 0.01	a : 0.01	
c : 0.13	i : 0.11	= : 0.11	! : 0.09	g : 0.09	[ : 0.09	f : 0.07	e : 0.07	d : 0.07	" : 0.05	b : 0.03	h : 0.01	a : 0.01	
! : 0.13	f : 0.11	e : 0.11	c : 0.11	i : 0.11	g : 0.11	= : 0.11	[ : 0.07	d : 0.05	h : 0.03	" : 0.01	
g : 0.24	c : 0.11	i : 0.11	= : 0.11	f : 0.09	e : 0.09	! : 0.07	[ : 0.07	h : 0.03	d : 0.01	b : 0.01	
g : 0.24	f : 0.15	c : 0.15	i : 0.11	= : 0.11	e : 0.05	[ : 0.05	d : 0.03	h : 0.03	! : 0.01	b : 0.01	
g : 0.22	f : 0.15	i : 0.11	c : 0.11	= : 0.11	e : 0.09	d : 0.03	h : 0.03	[ : 0.03	" : 0.01	b : 0.01	a : 0.01	! : 0.01	
g : 0.20	f : 0.13	[ : 0.11	i : 0.11	= : 0.11	c : 0.07	e : 0.07	! : 0.05	d : 0.03	" : 0.01	b : 0.01	h : 0.01	a : 0.01	
g : 0.20	c : 0.15	f : 0.11	i : 0.11	[ : 0.11	= : 0.11	d : 0.03	e : 0.03	! : 0.03	a : 0.01	" : 0.01	b : 0.01	h : 0.01	
b : 0.26	g : 0.16	c : 0.15	[ : 0.11	= : 0.11	f : 0.05	i : 0.05	e : 0.03	h : 0.01	d : 0.01	
b : 0.24	a : 0.15	c : 0.15	g : 0.13	= : 0.09	f : 0.05	i : 0.05	o : 0.03	e : 0.03	h : 0.01	d : 0.01	
n : 0.94	o : 0.05	
n : 0.94	o : 0.05	
n : 0.94	o : 0.05	
n : 0.94	o : 0.05	
n : 0.94	o : 0.05	
b : 0.24	g : 0.15	a : 0.15	c : 0.15	= : 0.09	f : 0.05	i : 0.05	e : 0.03	o : 0.01	h : 0.01	d : 0.01	
b : 0.24	g : 0.15	] : 0.15	c : 0.15	= : 0.11	f : 0.05	i : 0.05	e : 0.03	h : 0.01	d : 0.01	
g : 0.18	c : 0.18	] : 0.18	i : 0.11	= : 0.11	f : 0.07	d : 0.03	e : 0.03	b : 0.01	h : 0.01	2 : 0.01	
g : 0.20	f : 0.15	i : 0.11	= : 0.11	] : 0.07	d : 0.05	a : 0.05	c : 0.05	e : 0.05	b : 0.03	2 : 0.03	3 : 0.01	h : 0.01	
g : 0.22	f : 0.15	c : 0.13	i : 0.11	= : 0.11	e : 0.07	] : 0.07	d : 0.03	b : 0.01	3 : 0.01	h : 0.01	2 : 0.01	
g : 0.24	f : 0.15	c : 0.11	i : 0.11	= : 0.11	e : 0.07	d : 0.05	h : 0.03	] : 0.03	2 : 0.01	3 : 0.01	b : 0.01	
g : 0.24	c : 0.15	i : 0.11	= : 0.11	f : 0.09	e : 0.07	d : 0.05	2 : 0.03	h : 0.03	3 : 0.01	] : 0.01	4 : 0.01	b : 0.01	
f : 0.11	i : 0.11	= : 0.11	e : 0.09	d : 0.09	g : 0.09	] : 0.09	2 : 0.07	c : 0.07	3 : 0.05	h : 0.03	4 : 0.03	

#score	685.4339760134791
#seq	53
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF803GSP_RPS11_CDS_m3_run2.txt

#BEAR
EEEEE{A{CCCKKDDDDbb!!ammmma22bb:ccc[a[cc	chr1:22263547-22263814(-)$1	267	59	99	31.9488
EEEEELLLDDDD:DDDD::bbmmmmbb::eeeee[bb[bb	chr6:27778060-27778301(+)$1	241	140	180	28.9999

#otherMatches

#Seq PSSM
gggcggcgcggagcgagcgagcgagagagcggcgcgggcc	chr1:22263547-22263814(-)$1	267	59	99	31.9488
GGGUGACUAUCAUGCCCAAGGACAUCCAGCUCGCACGUCG	chr6:27778060-27778301(+)$1	241	140	180	28.9999

#DB
(((((.(.(((..((((((..(....)..)).(((.(.((	chr1:22263547-22263814(-)$1	1	59	99	31.9488
(((((...((((.((((..((....))..(((((.((.((	chr6:27778060-27778301(+)$1	1	140	180	28.9999

#PSSM
E : 1.00	
E : 1.00	
E : 1.00	
E : 1.00	
E : 1.00	
{ : 0.50	L : 0.50	
A : 0.50	L : 0.50	
{ : 0.50	L : 0.50	
C : 0.50	D : 0.50	
C : 0.50	D : 0.50	
C : 0.50	D : 0.50	
K : 0.50	D : 0.50	
K : 0.50	: : 0.50	
D : 1.00	
D : 1.00	
D : 1.00	
D : 1.00	
b : 0.50	: : 0.50	
b : 0.50	: : 0.50	
! : 0.50	b : 0.50	
! : 0.50	b : 0.50	
a : 0.50	m : 0.50	
m : 1.00	
m : 1.00	
m : 1.00	
m : 0.50	b : 0.50	
a : 0.50	b : 0.50	
2 : 0.50	: : 0.50	
2 : 0.50	: : 0.50	
b : 0.50	e : 0.50	
b : 0.50	e : 0.50	
: : 0.50	e : 0.50	
c : 0.50	e : 0.50	
c : 0.50	e : 0.50	
c : 0.50	[ : 0.50	
[ : 0.50	b : 0.50	
a : 0.50	b : 0.50	
[ : 1.00	
c : 0.50	b : 0.50	
c : 0.50	b : 0.50	

#score	60.94873993180002
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_CDS_m2_run2.txt

#BEAR
f[ccc[a[bb[bboooooobb]bb]a]cccfffff	chrM:14216-14450(-)$1	234	198	233	10.1853
dd[bb!!ccc[apppppppa]ccc]bb]dddda]d	chr1:2160892-2161165(+)$1	273	168	203	12.3763
ggg[a[bb[cccooooooccc]bb]a22ggggggg	chr19:18547567-18547863(-)$1	296	136	171	10.6175
d[a[ccc!!cccpppppppccc22ccca]dddd]c	chr1:22160236-22160479(-)$1	243	151	186	13.0934
cc!!eeeeecccbbnnnnnbb]ccc]eeeee22cc	chr11:47380064-47380339(-)$1	275	28	63	8.0488
####gggggggbbnnnnnbb22ggggggg333a]a	chr17:73892406-73892773(-)$1	367	130	165	9.6256
eeeee[ffffffpppppppffffffeeeee]bb]b	chr19:10407088-10407332(+)$1	244	69	104	12.9510
ffffff[eeeeepppppppeeeee333ffffff::	chr12:112036737-112037003(-)$1	266	66	101	11.0531
$$$$$eeeeesssssssssseeeee4444gggggg	chr11:5275532-5275800(-)$1	268	88	123	9.5569
""ccc[dddd[apppppppa]dddd22ccc22ccc	chr5:176916992-176917261(-)$1	269	21	56	12.2728
gggggggbbcccqqqqqqqqccc]bb333gggggg	chr17:76117512-76117838(-)$1	326	177	212	10.5012
dd[ffffff[bbqqqqqqqqbbffffffdddd]ee	chr19:4037216-4037476(+)$1	260	37	72	9.6908
!bb[ffffffbbpppppppbb]ffffff22bb333	chr1:22155800-22156052(-)$1	252	162	197	15.3748
c[ccc[ffffffssssssssssffffff]ccc]cc	chr19:803389-803662(+)$1	273	145	180	12.5405
!bb[ffffffbbpppppppbb]ffffff22bb333	chr1:22155775-22156000(-)$1	225	110	145	15.3748
:gggggggbbrrrrrrrrrbb]gggggggFFFFFF	chr19:59060606-59060840(+)$1	234	18	53	9.8599
i####gggggggpppppppggggggg22iiiiiii	chrM:14368-14605(-)$1	237	174	209	14.0706
gggggg[ccc[annnnna]ccc22ggggggg333b	chr17:80050762-80050972(-)$1	210	115	150	9.3424
iiiiiiii[cccssssssssssccciiiiiiiii:	chr22:50018397-50018654(-)$1	257	217	252	10.5756
fffff[ffffff[aooooooa]ffffff333ffff	chrX:153589595-153589864(-)$1	269	207	242	11.2114
ccc[ffffffbbpppppppbb]ffffff]ccca]b	chr12:123997699-123998012(-)$1	313	6	41	16.0207
ffffffffffffpppppppffffff22ffffff]c	chr6:31601552-31601835(+)$1	283	127	162	14.3491

#otherMatches

#Seq PSSM
UGCGGGGGCUUUGUAUGAUUAUGGGCGUUGAUUAG	chrM:14216-14450(-)$1	234	198	233	10.1853
CUGCUGAGCCAGGAUUACACGGGCAAGGAGGAGCA	chr1:2160892-2161165(+)$1	273	168	203	12.3763
CCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUCCC	chr19:18547567-18547863(-)$1	296	136	171	10.6175
CUGACAUCAGCUGGAGCAAGGUAAGUGCUGGAGAG	chr1:22160236-22160479(-)$1	243	151	186	13.0934
CAGCCACGCCACCGAGUCgcgugugugugugugug	chr11:47380064-47380339(-)$1	275	28	63	8.0488
GAGCGGGCGCUGCUGGAUGCCGAGCGCCUCAAGCG	chr17:73892406-73892773(-)$1	367	130	165	9.6256
GCCGUGUGUCUGAACGGAgcgggcggcggcgcugg	chr19:10407088-10407332(+)$1	244	69	104	12.9510
ggcgcccgcgcguccccgccgcgUUCCGGCGUCUC	chr12:112036737-112037003(-)$1	266	66	101	11.0531
UCUUUGACAGCUUUGGCAACCUGUCCUCUGCCUCU	chr11:5275532-5275800(-)$1	268	88	123	9.5569
CUGCCUGUCUUCUAUCUUUGUGGACCUGGUUUGCA	chr5:176916992-176917261(-)$1	269	21	56	12.2728
CGUCUUCUCGGAGUUCAUGAUCCAGGUGCGGGGAU	chr17:76117512-76117838(-)$1	326	177	212	10.5012
GCUGCUCUUGCAGAGAGAAGUGGGGAGUGCCUGGC	chr19:4037216-4037476(+)$1	260	37	72	9.6908
AUGAGUUGGGGUCAGGUAAGCACCCAGCACCAAAU	chr1:22155800-22156052(-)$1	252	162	197	15.3748
GCUCCGCGUUGUCCCUUCUCUUGCAGCGGGGAUCU	chr19:803389-803662(+)$1	273	145	180	12.5405
AUGAGUUGGGGUCAGGUAAGCACCCAGCACCAAAU	chr1:22155775-22156000(-)$1	225	110	145	15.3748
AACUAUAGCUGUAGGAUGAAGCCUGUAGUCCAGGU	chr19:59060606-59060840(+)$1	234	18	53	9.8599
UGGGGGUCAGGGGUUGAGGUCUUGGUGAGUGUUUU	chrM:14368-14605(-)$1	237	174	209	14.0706
CUGCUGACCAAGAAGUCCCUGGCCCGGCGGGUGUA	chr17:80050762-80050972(-)$1	210	115	150	9.3424
CAAGGCCAUGAGAUUUAUGUUCCUCUGGUCUUGGU	chr22:50018397-50018654(-)$1	257	217	252	10.5756
GCCCUAAGGGUAGAACCCACUGUGCUCUCUGAGGG	chrX:153589595-153589864(-)$1	269	207	242	11.2114
GGCUGCUGGGCUUCCACAUAGACCCAGCCGCCCCU	chr12:123997699-123998012(-)$1	313	6	41	16.0207
GGGACUCCUCGGGACUCUGCCGGGGUUAGUCCCUU	chr6:31601552-31601835(+)$1	283	127	162	14.3491

#DB
(.(((.(.((.((......)).)).).))))))))	chrM:14216-14450(-)$1	1	198	233	10.1853
((.((..(((.(.......).))).)).))))).)	chr1:2160892-2161165(+)$1	1	168	203	12.3763
(((.(.((.(((......))).)).)..)))))))	chr19:18547567-18547863(-)$1	1	136	171	10.6175
(.(.(((..(((.......)))..)))).)))).)	chr1:22160236-22160479(-)$1	1	151	186	13.0934
((..((((((((((.....)).))).)))))..))	chr11:47380064-47380339(-)$1	1	28	63	8.0488
....(((((((((.....))..)))))))...).)	chr17:73892406-73892773(-)$1	1	130	165	9.6256
(((((.((((((.......))))))))))).)).)	chr19:10407088-10407332(+)$1	1	69	104	12.9510
((((((.(((((.......)))))...))))))..	chr12:112036737-112037003(-)$1	1	66	101	11.0531
.....(((((..........)))))....))))))	chr11:5275532-5275800(-)$1	1	88	123	9.5569
..(((.((((.(.......).))))..)))..)))	chr5:176916992-176917261(-)$1	1	21	56	12.2728
((((((((((((........))).))...))))))	chr17:76117512-76117838(-)$1	1	177	212	10.5012
((.((((((.((........)))))))))))).))	chr19:4037216-4037476(+)$1	1	37	72	9.6908
.((.((((((((.......)).))))))..))...	chr1:22155800-22156052(-)$1	1	162	197	15.3748
(.(((.((((((..........)))))).))).))	chr19:803389-803662(+)$1	1	145	180	12.5405
.((.((((((((.......)).))))))..))...	chr1:22155775-22156000(-)$1	1	110	145	15.3748
.(((((((((.........)).)))))))((((((	chr19:59060606-59060840(+)$1	1	18	53	9.8599
(....(((((((.......)))))))..)))))))	chrM:14368-14605(-)$1	1	174	209	14.0706
((((((.(((.(.....).)))..)))))))...)	chr17:80050762-80050972(-)$1	1	115	150	9.3424
((((((((.(((..........)))))))))))).	chr22:50018397-50018654(-)$1	1	217	252	10.5756
(((((.((((((.(......).))))))...))))	chrX:153589595-153589864(-)$1	1	207	242	11.2114
(((.((((((((.......)).)))))).)))).)	chr12:123997699-123998012(-)$1	1	6	41	16.0207
((((((((((((.......))))))..)))))).)	chr6:31601552-31601835(+)$1	1	127	162	14.3491

#PSSM
f : 0.18	d : 0.13	g : 0.13	c : 0.13	! : 0.09	i : 0.09	# : 0.04	e : 0.04	$ : 0.04	" : 0.04	: : 0.04	
g : 0.18	[ : 0.13	f : 0.13	d : 0.09	c : 0.09	# : 0.09	b : 0.09	e : 0.04	$ : 0.04	" : 0.04	i : 0.04	
c : 0.18	g : 0.18	f : 0.13	[ : 0.09	# : 0.09	b : 0.09	a : 0.04	! : 0.04	e : 0.04	$ : 0.04	i : 0.04	
[ : 0.22	f : 0.18	c : 0.13	g : 0.13	# : 0.09	b : 0.04	! : 0.04	e : 0.04	$ : 0.04	i : 0.04	
f : 0.31	c : 0.18	g : 0.18	e : 0.09	b : 0.04	a : 0.04	$ : 0.04	# : 0.04	i : 0.04	
[ : 0.27	f : 0.27	g : 0.22	e : 0.09	! : 0.04	c : 0.04	i : 0.04	
f : 0.36	g : 0.18	e : 0.09	[ : 0.09	a : 0.04	! : 0.04	b : 0.04	c : 0.04	d : 0.04	i : 0.04	
f : 0.36	e : 0.13	g : 0.13	c : 0.09	b : 0.09	[ : 0.04	! : 0.04	d : 0.04	i : 0.04	
f : 0.36	b : 0.13	e : 0.13	c : 0.09	[ : 0.09	g : 0.09	! : 0.04	d : 0.04	
c : 0.31	f : 0.31	b : 0.09	g : 0.09	e : 0.09	d : 0.04	[ : 0.04	
c : 0.22	[ : 0.18	f : 0.18	b : 0.18	g : 0.09	e : 0.04	s : 0.04	r : 0.04	
b : 0.27	c : 0.22	f : 0.18	a : 0.13	e : 0.04	s : 0.04	r : 0.04	g : 0.04	
p : 0.45	b : 0.13	s : 0.13	q : 0.09	o : 0.04	r : 0.04	n : 0.04	[ : 0.04	
p : 0.45	s : 0.13	o : 0.09	n : 0.09	q : 0.09	b : 0.04	r : 0.04	a : 0.04	
p : 0.45	o : 0.13	n : 0.13	s : 0.13	q : 0.09	r : 0.04	
p : 0.45	o : 0.13	n : 0.13	s : 0.13	q : 0.09	r : 0.04	
p : 0.45	o : 0.13	n : 0.13	s : 0.13	q : 0.09	r : 0.04	
p : 0.45	o : 0.13	s : 0.13	n : 0.09	q : 0.09	r : 0.04	a : 0.04	
p : 0.45	s : 0.13	o : 0.09	q : 0.09	c : 0.04	n : 0.04	b : 0.04	r : 0.04	] : 0.04	
b : 0.31	c : 0.13	s : 0.13	a : 0.09	f : 0.09	q : 0.09	e : 0.04	g : 0.04	o : 0.04	
b : 0.31	c : 0.18	] : 0.09	f : 0.09	e : 0.09	s : 0.09	2 : 0.04	g : 0.04	a : 0.04	
] : 0.36	c : 0.18	f : 0.09	e : 0.09	s : 0.09	2 : 0.04	d : 0.04	b : 0.04	g : 0.04	
f : 0.36	c : 0.18	g : 0.13	b : 0.09	2 : 0.09	e : 0.09	d : 0.04	
f : 0.36	c : 0.13	g : 0.13	b : 0.09	2 : 0.09	e : 0.09	d : 0.04	] : 0.04	
f : 0.36	g : 0.18	] : 0.13	c : 0.13	3 : 0.04	e : 0.04	d : 0.04	b : 0.04	
f : 0.27	g : 0.18	a : 0.09	b : 0.09	2 : 0.09	c : 0.04	] : 0.04	e : 0.04	3 : 0.04	4 : 0.04	i : 0.04	
f : 0.27	2 : 0.18	g : 0.13	e : 0.09	3 : 0.09	] : 0.04	b : 0.04	c : 0.04	4 : 0.04	i : 0.04	
f : 0.36	g : 0.13	c : 0.09	2 : 0.09	e : 0.09	] : 0.04	a : 0.04	4 : 0.04	3 : 0.04	i : 0.04	
g : 0.18	] : 0.13	c : 0.09	d : 0.09	e : 0.09	f : 0.09	3 : 0.09	2 : 0.09	i : 0.09	4 : 0.04	
c : 0.18	g : 0.18	d : 0.13	e : 0.09	3 : 0.09	f : 0.09	2 : 0.09	i : 0.09	F : 0.04	
g : 0.18	f : 0.13	d : 0.13	3 : 0.09	b : 0.09	c : 0.09	i : 0.09	e : 0.04	] : 0.04	2 : 0.04	F : 0.04	
f : 0.18	d : 0.13	g : 0.13	b : 0.13	2 : 0.09	3 : 0.09	c : 0.09	i : 0.09	F : 0.04	
f : 0.18	a : 0.13	g : 0.13	3 : 0.13	] : 0.09	i : 0.09	d : 0.04	2 : 0.04	b : 0.04	c : 0.04	F : 0.04	
] : 0.27	g : 0.13	c : 0.13	3 : 0.13	f : 0.09	i : 0.09	: : 0.04	e : 0.04	F : 0.04	
c : 0.22	g : 0.13	b : 0.13	f : 0.09	: : 0.09	3 : 0.09	d : 0.04	a : 0.04	e : 0.04	F : 0.04	i : 0.04	

#score	258.6934163292547
#seq	22
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_CDS_m3_run2.txt

#BEAR
====[cccyyyyyyyyyyyyyyyyccc333==	chr17:34171869-34172143(+)$1	274	231	263	40.4508
==========uuuuuuuuuuuu==========	chr12:25361984-25362233(-)$1	249	99	131	34.5684

#otherMatches

#Seq PSSM
UUGAACCACAUUUUAACAAUUUUUUGGAACUU	chr17:34171869-34172143(+)$1	274	231	263	40.4508
uuuuuucuauaaaaagaaaaaaauGGAAAAAA	chr12:25361984-25362233(-)$1	249	99	131	34.5684

#DB
((((.(((................)))...))	chr17:34171869-34172143(+)$1	1	231	263	40.4508
((((((((((............))))))))))	chr12:25361984-25362233(-)$1	1	99	131	34.5684

#PSSM
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
[ : 0.50	= : 0.50	
c : 0.50	= : 0.50	
c : 0.50	= : 0.50	
c : 0.50	= : 0.50	
y : 0.50	= : 0.50	
y : 0.50	= : 0.50	
y : 0.50	u : 0.50	
y : 0.50	u : 0.50	
y : 0.50	u : 0.50	
y : 0.50	u : 0.50	
y : 0.50	u : 0.50	
y : 0.50	u : 0.50	
y : 0.50	u : 0.50	
y : 0.50	u : 0.50	
y : 0.50	u : 0.50	
y : 0.50	u : 0.50	
y : 0.50	u : 0.50	
y : 0.50	u : 0.50	
y : 0.50	= : 0.50	
y : 0.50	= : 0.50	
c : 0.50	= : 0.50	
c : 0.50	= : 0.50	
c : 0.50	= : 0.50	
3 : 0.50	= : 0.50	
3 : 0.50	= : 0.50	
3 : 0.50	= : 0.50	
= : 1.00	
= : 1.00	

#score	75.01933096624998
#seq	2
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_CDS_m3_run2.txt

#BEAR
ddddooooooddddeeeee####dddd!!cccdd	chr3:150344786-150345051(+)$1	265	6	40	9.8312
bb]ffffff]ccc================adddd	chr19:11256918-11257166(-)$1	248	207	241	10.3627
dddd[bblllbb]dddd:===========[bbmm	chr11:637270-637539(+)$1	269	124	158	13.1983
ddddddd333a333ccc22ffffff=========	chr2:170606080-170606400(+)$1	320	276	310	11.6110
eeeeeooooooeeeee:============!!bb[	chr19:11256978-11257233(-)$1	255	30	64	11.8795
eeeee22cccbb]dddd:bb[ggggggg[eeeee	chr7:5460707-5460975(-)$1	268	136	170	11.5210
ddddbbdddd]a]ccc333iiiiiiiii]bbccc	chr5:139625017-139625319(-)$1	302	161	195	11.4811
eeeee]bb]ccc]dddd::ccc"""ccc[cccee	chr17:79686732-79687007(+)$1	275	141	175	11.2211
eeeee]ccc]bb]dddd]cccbb22bbaccciii	chr19:2272906-2273128(+)$1	222	176	210	11.8343

#otherMatches

#Seq PSSM
AUAGAUGUACCUGUGUGGUCUAAGCUGGAAUCUG	chr3:150344786-150345051(+)$1	265	6	40	9.8312
ucaggggguauguuugagugccacggugugccca	chr19:11256918-11257166(-)$1	248	207	241	10.3627
GCUGGGCAGGGCGCGGCGGCGCUGGUGGGGGGCG	chr11:637270-637539(+)$1	269	124	158	13.1983
UCAGUAAAUUGUAAUUCCUAACCCUACUGUACUC	chr2:170606080-170606400(+)$1	320	276	310	11.6110
ucccaaagugcugggauuacaggugugagucacc	chr19:11256978-11257233(-)$1	255	30	64	11.8795
CGGUCCCCCGCCGCCGCUGCUGUCCGGCCUGGCC	chr7:5460707-5460975(-)$1	268	136	170	11.5210
UCUCCACCUCAGCUCCUGCUCCCUCUGCAUCAGA	chr5:139625017-139625319(-)$1	302	161	195	11.4811
GCGCCGUGGAGACAGCGAAGCUCGGGCCUCUGGC	chr17:79686732-79687007(+)$1	275	141	175	11.2211
GUCUUCGGGAGAGGAGGAGGAGUAGGGCCGCCUC	chr19:2272906-2273128(+)$1	222	176	210	11.8343

#DB
((((......))))(((((....((((..(((((	chr3:150344786-150345051(+)$1	1	6	40	9.8312
)).)))))).))))))))))))))))))))))))	chr19:11256918-11257166(-)$1	1	207	241	10.3627
((((.((...)).)))).(((((((((((.((..	chr11:637270-637539(+)$1	1	124	158	13.1983
)))))))...)...)))..)))))))))))))))	chr2:170606080-170606400(+)$1	1	276	310	11.6110
(((((......))))).((((((((((((..((.	chr19:11256978-11257233(-)$1	1	30	64	11.8795
)))))..))))).)))).((.(((((((.(((((	chr7:5460707-5460975(-)$1	1	136	170	11.5210
)))))))))).).)))...))))))))).)))))	chr5:139625017-139625319(-)$1	1	161	195	11.4811
))))).)).))).))))..(((...(((.(((((	chr17:79686732-79687007(+)$1	1	141	175	11.2211
))))).))).)).)))).)))))..)))))))))	chr19:2272906-2273128(+)$1	1	176	210	11.8343

#PSSM
d : 0.44	e : 0.44	b : 0.11	
d : 0.44	e : 0.44	b : 0.11	
d : 0.44	e : 0.44	] : 0.11	
d : 0.44	e : 0.44	f : 0.11	
e : 0.44	o : 0.11	f : 0.11	[ : 0.11	d : 0.11	b : 0.11	
o : 0.22	b : 0.22	] : 0.22	f : 0.11	d : 0.11	2 : 0.11	
o : 0.22	b : 0.22	d : 0.22	f : 0.11	2 : 0.11	c : 0.11	
o : 0.22	c : 0.22	f : 0.11	l : 0.11	3 : 0.11	d : 0.11	b : 0.11	
o : 0.22	c : 0.22	f : 0.11	l : 0.11	3 : 0.11	d : 0.11	] : 0.11	
o : 0.22	] : 0.22	c : 0.22	l : 0.11	3 : 0.11	d : 0.11	
b : 0.33	c : 0.22	d : 0.11	a : 0.11	o : 0.11	] : 0.11	
b : 0.33	c : 0.22	d : 0.11	3 : 0.11	e : 0.11	a : 0.11	
] : 0.55	d : 0.11	c : 0.11	3 : 0.11	e : 0.11	
d : 0.55	= : 0.11	3 : 0.11	e : 0.11	c : 0.11	
d : 0.44	e : 0.22	c : 0.22	= : 0.11	
d : 0.44	e : 0.22	c : 0.22	= : 0.11	
d : 0.44	e : 0.11	= : 0.11	c : 0.11	: : 0.11	3 : 0.11	
: : 0.33	= : 0.22	e : 0.11	2 : 0.11	3 : 0.11	] : 0.11	
= : 0.33	e : 0.11	2 : 0.11	b : 0.11	3 : 0.11	: : 0.11	c : 0.11	
= : 0.33	c : 0.22	# : 0.11	f : 0.11	b : 0.11	i : 0.11	
= : 0.33	c : 0.22	# : 0.11	f : 0.11	[ : 0.11	i : 0.11	
= : 0.33	# : 0.11	f : 0.11	g : 0.11	i : 0.11	c : 0.11	b : 0.11	
= : 0.33	# : 0.11	f : 0.11	g : 0.11	i : 0.11	" : 0.11	b : 0.11	
= : 0.33	d : 0.11	f : 0.11	g : 0.11	i : 0.11	" : 0.11	2 : 0.11	
= : 0.33	d : 0.11	f : 0.11	g : 0.11	i : 0.11	" : 0.11	2 : 0.11	
= : 0.44	d : 0.11	g : 0.11	i : 0.11	c : 0.11	b : 0.11	
= : 0.44	d : 0.11	g : 0.11	i : 0.11	c : 0.11	b : 0.11	
= : 0.44	! : 0.11	g : 0.11	i : 0.11	c : 0.11	a : 0.11	
= : 0.44	[ : 0.22	! : 0.11	] : 0.11	c : 0.11	
c : 0.33	a : 0.11	[ : 0.11	= : 0.11	! : 0.11	e : 0.11	b : 0.11	
c : 0.33	b : 0.22	d : 0.11	= : 0.11	! : 0.11	e : 0.11	
c : 0.33	b : 0.22	d : 0.11	= : 0.11	e : 0.11	i : 0.11	
d : 0.22	e : 0.22	m : 0.11	= : 0.11	b : 0.11	c : 0.11	i : 0.11	
d : 0.22	e : 0.22	m : 0.11	= : 0.11	[ : 0.11	c : 0.11	i : 0.11	

#score	102.94075713570001
#seq	9
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF357ABQ_FASTKD2_UTR_m2_run2.txt

#BEAR
eee[bb[aqqqqqqqqa]bb]eeeeeg	chr20:57467262-57467497(+)$1	235	189	216	11.5142
ccc!!ddddqqqqqqqqdddd333ccc	chr1:155658334-155658602(-)$1	268	187	214	13.6862
eeee[a[bbqqqqqqqqbb]a22eeee	chr2:191513668-191513927(+)$1	259	213	240	14.2317
dd[bb[cccrrrrrrrrrccc]bb]dd	chr5:137088381-137088623(-)$1	242	184	211	9.7298
f[gggggggqqqqqqqqggggggg]ff	chr3:101292956-101293225(+)$1	269	70	97	14.4698
hhhhhhh[arrrrrrrrra]hhhhhhh	chr8:41787600-41787856(-)$1	256	45	72	9.6448
%%gggggggqqqqqqqqgggggggeee	chr19:41770848-41771096(+)$1	248	162	189	12.7862
gggggg[bbqqqqqqqqbb]ggggggg	chr8:103424365-103424615(-)$1	250	201	228	15.6895
hh!!eeeeerrrrrrrrreeeee22hh	chrX:106893689-106893973(+)$1	284	41	68	9.3572
eeeee!!bbqqqqqqqqbb]eeeee::	chr5:179153578-179153800(+)$1	222	141	168	12.5478
iiiiiiiiiqqqqqqqqiiiiiiiii:	chr6:16148127-16148416(+)$1	289	247	274	14.2699
dddd!!cccqqqqqqqqcccdddd]bb	chr12:109124332-109124592(-)$1	260	41	68	12.9206
======[bbqqqqqqqqbb========	chr8:101963101-101963391(-)$1	290	90	117	16.0161
ffffff[bbqqqqqqqqbbffffffdd	chrX:152954872-152955106(+)$1	234	119	146	13.3259
f[eeeee[aqqqqqqqqa]eeeeefff	chr2:20550311-20550596(-)$1	285	115	142	13.3650
eeeee!!bbqqqqqqqqbb333eeeee	chr1:31404292-31404599(-)$1	307	205	232	14.6055
ggggg!!bbpppppppbb333gggggg	chr19:34287649-34287898(+)$1	249	148	175	9.7481
==========ppppppp==========	chr12:7052903-7053145(+)$1	242	108	135	10.0324
hhh!!ddddqqqqqqqqdddd22hhhh	chr12:9905003-9905277(-)$1	274	13	40	12.4922
[eeeee[bbqqqqqqqqbb]eeeee]a	chr15:74702100-74702360(-)$1	260	174	201	14.4067
cc!!bb[aqqqqqqqqabb22ccc]bb	chr2:61765009-61765292(-)$1	283	124	151	12.2803
ccc[cccbbqqqqqqqqbb]ccc]ccc	chr1:145442429-145442701(+)$1	272	105	132	14.7458
dddd!!cccqqqqqqqqccc333dddd	chr6:29600544-29600832(-)$1	288	74	101	13.3998
iiiiiiiiiqqqqqqqqiiiiiiiii:	chr6:16148227-16148472(+)$1	245	147	174	14.2699
cc[ddddbbqqqqqqqqbb]ddddccc	chr11:10530500-10530730(-)$1	230	149	176	13.6694
fff[eeeeeqqqqqqqqeeeee]ffff	chr4:2935990-2936301(-)$1	311	272	299	12.7166
eeeeeddddqqqqqqqqddddbb[a[c	chr19:3062292-3062531(-)$1	239	102	129	12.0554
==========ppppppp==========	chr14:70238226-70238465(+)$1	239	16	43	10.0324
c"""eeeeeqqqqqqqqeeeee333cc	chr5:79946748-79946968(-)$1	220	184	211	13.2320
fff[bb[bbqqqqqqqqbbbbffffff	chr1:59247165-59247422(-)$1	257	130	157	12.9978
!!ccc[cccqqqqqqqqccc]ccc]cc	chr9:139560093-139560362(+)$1	269	51	78	14.5181
eeee!!cccqqqqqqqqccc22eeeee	chr12:54679569-54679839(+)$1	270	208	235	13.7373
bb[ffffffrrrrrrrrrffffff]bb	chr5:137088289-137088563(-)$1	274	0	27	8.9329
gggggg[cccooooooccc333ggggg	chr15:44063542-44063791(+)$1	249	27	54	8.6076
b[ccc"""aqqqqqqqqa22ccc]bbD	chr1:213031640-213031908(+)$1	268	160	187	12.4634
ggggggg[arrrrrrrrra]ggggggg	chr8:101964436-101964710(-)$1	274	37	64	12.0930
abb!!ddddqqqqqqqqdddd22bb22	chr6:86352753-86352998(-)$1	245	84	111	11.8044
!hhhhhhhhqqqqqqqqhhhhhhhhff	chr11:289386-289687(+)$1	301	259	286	11.9010
!bb[a[a[arrrrrrrrra]a]a]bb2	chr6:34664409-34664669(-)$1	260	109	136	10.6677
!!bb[ddddqqqqqqqqdddd]bb]a2	chr19:7978203-7978516(+)$1	313	73	100	12.5657
======[bbpppppppbb22=======	chr15:74701947-74702202(-)$1	255	220	247	9.6647
==========ppppppp==========	chr9:139743349-139743616(+)$1	267	124	151	10.0324
ffffff!!aqqqqqqqqa22ffffff]	chr16:1749173-1749423(+)$1	250	13	40	13.2954
!!gggggggqqqqqqqqggggggg22d	chr2:97525560-97525833(-)$1	273	104	131	14.1776
fffffa[bbqqqqqqqqbb]a]fffff	chr10:74035233-74035520(+)$1	287	1	28	14.2326
ccc[eeeeerrrrrrrrreeeeeccc4	chr1:36789178-36789471(+)$1	293	49	76	10.0111
eeee!!cccqqqqqqqqccc22eeeee	chr16:31044909-31045190(+)$1	281	156	183	13.7373
a!!ffffffqqqqqqqqffffff]a]d	chr6:33172052-33172287(+)$1	235	38	65	12.7768
ggggggbbrrrrrrrrrbb]ggggggg	chr7:127231547-127231822(+)$1	275	221	248	11.7097
[bbbb!!bbqqqqqqqqbb22bb]bb2	chr6:33171975-33172229(+)$1	254	47	74	12.7100
ggggggwwwwwwwwwwwwwwggggggg	chr6:117996612-117996872(+)$1	260	37	64	10.7591
#ccc[ddddqqqqqqqqdddd]ccc44	chr11:60658394-60658662(-)$1	268	152	179	13.1660
ggg!!ddddqqqqqqqqdddd]ggggg	chr4:2935788-2936044(-)$1	256	60	87	14.1282
c!!cccwwwwwwwwwwwwwwccc22cc	chr6:31698285-31698542(-)$1	257	74	101	9.7071
cc[ddddbbqqqqqqqqbb]dddd333	chr12:132402736-132402996(+)$1	260	169	196	13.7821
iiiiiiiiiqqqqqqqqiiiiiiiiie	chr5:126172483-126172764(+)$1	281	112	139	15.0891
==========ppppppp==========	chr14:70238180-70238426(+)$1	246	62	89	10.0324

#otherMatches

#Seq PSSM
GGCGCCGUGGUGGCGGAGGGGGCCUCG	chr20:57467262-57467497(+)$1	235	189	216	11.5142
CAGGGUCUGAGGGGGAGUGGAGAACUG	chr1:155658334-155658602(-)$1	268	187	214	13.6862
GGGUGGGCGGGAAGAAGCGGCGGGCCC	chr2:191513668-191513927(+)$1	259	213	240	14.2317
GUUGUAAGGACUUGAUAACCUGGCUAC	chr5:137088381-137088623(-)$1	242	184	211	9.7298
GGCGUGGCUGCAGGGGAGGCCGCGGCG	chr3:101292956-101293225(+)$1	269	70	97	14.4698
UCAGCUGUGUCAUUGCUUCCUGGUUGG	chr8:41787600-41787856(-)$1	256	45	72	9.6448
GUCGGAAGAACAAGAGGUUUUCCGUUU	chr19:41770848-41771096(+)$1	248	162	189	12.7862
CAGCUCAAUGACAGGUAAUAGGGCUGG	chr8:103424365-103424615(-)$1	250	201	228	15.6895
GCACCCUGUAAGGCAGGAGCAGGCAGC	chrX:106893689-106893973(+)$1	284	41	68	9.3572
CUGUCAGUCAAGAGGAGGAAGACAGAA	chr5:179153578-179153800(+)$1	222	141	168	12.5478
UUAUUUUUUCACUUGUAAAAAAAUAAU	chr6:16148127-16148416(+)$1	289	247	274	14.2699
GAGUAAUGUGGGUGGGGGCGGCUUGGG	chr12:109124332-109124592(-)$1	260	41	68	12.9206
UUUUGCUCCUUGUGAACGGGCGGGGGA	chr8:101963101-101963391(-)$1	290	90	117	16.0161
CAGAGGUCCAGAGCAAAGGCCUUUGCC	chrX:152954872-152955106(+)$1	234	119	146	13.3259
UAGGUGGAGAAAGAAGACAUUGCCGCC	chr2:20550311-20550596(-)$1	285	115	142	13.3650
UGUGUGAUCUUUAUUUUGAAAAAUACA	chr1:31404292-31404599(-)$1	307	205	232	14.6055
GCAGCGAGCAUAGGCGGCGAAGCUGCG	chr19:34287649-34287898(+)$1	249	148	175	9.7481
ggcuuucuggcuuuuuaccggaaagcc	chr12:7052903-7053145(+)$1	242	108	135	10.0324
CUAGAAUAAUACUAGUCUUAUAAUAGG	chr12:9905003-9905277(-)$1	274	13	40	12.4922
GGGUUCUUGGAGAGUGGCAUGAGCUGG	chr15:74702100-74702360(-)$1	260	174	201	14.4067
GGAGCCGCGUGAGAGAGGGAGCCGUGU	chr2:61765009-61765292(-)$1	283	124	151	12.2803
GGUAAAGACUAUAUUUUGUACUUAACC	chr1:145442429-145442701(+)$1	272	105	132	14.7458
CCUGGAUUCgaggggaggagggacggg	chr6:29600544-29600832(-)$1	288	74	101	13.3998
UUAUUUUUUCACUUGUAAAAAAAUAAU	chr6:16148227-16148472(+)$1	245	147	174	14.2699
AGCAAGGACUAAUCCCUGUACCUUCUG	chr11:10530500-10530730(-)$1	230	149	176	13.6694
aucgggaucgggaucgggauccggguu	chr4:2935990-2936301(-)$1	311	272	299	12.7166
ggaggggcggggaggggcgccgggcgc	chr19:3062292-3062531(-)$1	239	102	129	12.0554
AUACUUGCUAAAAAUUCUGGUAAGUAU	chr14:70238226-70238465(+)$1	239	16	43	10.0324
AGAAAUUGUAAACCGGCGCAAUAGAUA	chr5:79946748-79946968(-)$1	220	184	211	13.2320
UGUGAGAGCGAGGCUGAGCCUACAGAU	chr1:59247165-59247422(-)$1	257	130	157	12.9978
AAUGggggcggggcggggccgccaggu	chr9:139560093-139560362(+)$1	269	51	78	14.5181
GAUUCGUGACAAUGCCUUUAAAGAUCC	chr12:54679569-54679839(+)$1	270	208	235	13.7373
GGUCGUUUUUAUACUAGCAAAAUGUCU	chr5:137088289-137088563(-)$1	274	0	27	8.9329
GUUUCUUAGCUGCACUGUUUAUGGAAA	chr15:44063542-44063791(+)$1	249	27	54	8.6076
CGGCCAGACGAUGAGGAGGGGGCGGCG	chr1:213031640-213031908(+)$1	268	160	187	12.4634
GCCGGCUGAGAGGAAGAGUGGGCCGGC	chr8:101964436-101964710(-)$1	274	37	64	12.0930
AGCGACCGCAGAggggagugggagcag	chr6:86352753-86352998(-)$1	245	84	111	11.8044
CGAGGCCCCGUCUAGGAGGGGCCUCAG	chr11:289386-289687(+)$1	301	259	286	11.9010
agAGUGAGUGAGUGGCAGAGUGAGUUU	chr6:34664409-34664669(-)$1	260	109	136	10.6677
AGGUGACCGGAGGGAAUCGGUGACGGA	chr19:7978203-7978516(+)$1	313	73	100	12.5657
GCCCUUGGCGUUGAGGGUUGGGGGGCG	chr15:74701947-74702202(-)$1	255	220	247	9.6647
UGGGGGCCACGGGGAGGGUGGUCUUCG	chr9:139743349-139743616(+)$1	267	124	151	10.0324
UGCCUCUGUGGGGAUGAAAUGGGGCAC	chr16:1749173-1749423(+)$1	250	13	40	13.2954
AAGGGUGGGUGGGGCCUCCCACUUGGC	chr2:97525560-97525833(-)$1	273	104	131	14.1776
GUUACUGACAGUUAACAGUGGUGUGAC	chr10:74035233-74035520(+)$1	287	1	28	14.2326
GUUUCCUCCgaggaaagaggagggacg	chr1:36789178-36789471(+)$1	293	49	76	10.0111
GGGAAUUCCAAAUUUGAGGGCCUCCCG	chr16:31044909-31045190(+)$1	281	156	183	13.7373
GGAGAGGGUUAGUUGGUAUUCUCAUGG	chr6:33172052-33172287(+)$1	235	38	65	12.7768
UAGCCUGCAAAGGAGAGGCUAGGUUAC	chr7:127231547-127231822(+)$1	275	221	248	11.7097
GGAGUCGGGGAUAAACAUCAAACAUCA	chr6:33171975-33172229(+)$1	254	47	74	12.7100
CUGCCAAGGGAGGAGGAAGAUGGCGGC	chr6:117996612-117996872(+)$1	260	37	64	10.7591
ACUCUGGUCUGAGUGGUGGCCUGAGAA	chr11:60658394-60658662(-)$1	268	152	179	13.1660
UCUCUCGCUGUUACGAGGGCGUGGGAG	chr4:2935788-2936044(-)$1	256	60	87	14.1282
UGAGGGAAAGAAAUGGGGGGCCUGGGU	chr6:31698285-31698542(-)$1	257	74	101	9.7071
GGAGCAUUGGGAUAUAACAGGUGUAAA	chr12:132402736-132402996(+)$1	260	169	196	13.7821
GUGGAGGGAGGGAAGGGUUUCUCUAUU	chr5:126172483-126172764(+)$1	281	112	139	15.0891
AUACUUGCUAAAAAUUCUGGUAAGUAU	chr14:70238180-70238426(+)$1	246	62	89	10.0324

#DB
(((.((.(........).)).)))))(	chr20:57467262-57467497(+)$1	1	189	216	11.5142
(((..((((........))))...)))	chr1:155658334-155658602(-)$1	1	187	214	13.6862
((((.(.((........)).)..))))	chr2:191513668-191513927(+)$1	1	213	240	14.2317
((.((.(((.........))).)).))	chr5:137088381-137088623(-)$1	1	184	211	9.7298
(.(((((((........))))))).))	chr3:101292956-101293225(+)$1	1	70	97	14.4698
(((((((.(.........).)))))))	chr8:41787600-41787856(-)$1	1	45	72	9.6448
..(((((((........))))))))))	chr19:41770848-41771096(+)$1	1	162	189	12.7862
((((((.((........)).)))))))	chr8:103424365-103424615(-)$1	1	201	228	15.6895
((..(((((.........)))))..))	chrX:106893689-106893973(+)$1	1	41	68	9.3572
(((((..((........)).)))))..	chr5:179153578-179153800(+)$1	1	141	168	12.5478
(((((((((........))))))))).	chr6:16148127-16148416(+)$1	1	247	274	14.2699
((((..(((........))))))).))	chr12:109124332-109124592(-)$1	1	41	68	12.9206
((((((.((........))))))))))	chr8:101963101-101963391(-)$1	1	90	117	16.0161
((((((.((........))))))))((	chrX:152954872-152955106(+)$1	1	119	146	13.3259
(.(((((.(........).))))))))	chr2:20550311-20550596(-)$1	1	115	142	13.3650
(((((..((........))...)))))	chr1:31404292-31404599(-)$1	1	205	232	14.6055
(((((..((.......))...))))))	chr19:34287649-34287898(+)$1	1	148	175	9.7481
((((((((((.......))))))))))	chr12:7052903-7053145(+)$1	1	108	135	10.0324
(((..((((........))))..))))	chr12:9905003-9905277(-)$1	1	13	40	12.4922
.(((((.((........)).))))).)	chr15:74702100-74702360(-)$1	1	174	201	14.4067
((..((.(........)))..))).))	chr2:61765009-61765292(-)$1	1	124	151	12.2803
(((.(((((........)).))).)))	chr1:145442429-145442701(+)$1	1	105	132	14.7458
((((..(((........)))...))))	chr6:29600544-29600832(-)$1	1	74	101	13.3998
(((((((((........))))))))).	chr6:16148227-16148472(+)$1	1	147	174	14.2699
((.((((((........)).)))))))	chr11:10530500-10530730(-)$1	1	149	176	13.6694
(((.(((((........))))).))))	chr4:2935990-2936301(-)$1	1	272	299	12.7166
)))))((((........))))((.(.(	chr19:3062292-3062531(-)$1	1	102	129	12.0554
((((((((((.......))))))))))	chr14:70238226-70238465(+)$1	1	16	43	10.0324
(...(((((........)))))...))	chr5:79946748-79946968(-)$1	1	184	211	13.2320
(((.((.((........))))))))))	chr1:59247165-59247422(-)$1	1	130	157	12.9978
..(((.(((........))).))).))	chr9:139560093-139560362(+)$1	1	51	78	14.5181
((((..(((........)))..)))))	chr12:54679569-54679839(+)$1	1	208	235	13.7373
((.((((((.........)))))).))	chr5:137088289-137088563(-)$1	1	0	27	8.9329
((((((.(((......)))...)))))	chr15:44063542-44063791(+)$1	1	27	54	8.6076
(.(((...(........)..))).)))	chr1:213031640-213031908(+)$1	1	160	187	12.4634
(((((((.(.........).)))))))	chr8:101964436-101964710(-)$1	1	37	64	12.0930
(((..((((........))))..))..	chr6:86352753-86352998(-)$1	1	84	111	11.8044
.((((((((........))))))))))	chr11:289386-289687(+)$1	1	259	286	11.9010
.((.(.(.(.........).).).)).	chr6:34664409-34664669(-)$1	1	109	136	10.6677
..((.((((........)))).)).).	chr19:7978203-7978516(+)$1	1	73	100	12.5657
((((((.((.......))..)))))))	chr15:74701947-74702202(-)$1	1	220	247	9.6647
((((((((((.......))))))))))	chr9:139743349-139743616(+)$1	1	124	151	10.0324
((((((..(........)..)))))).	chr16:1749173-1749423(+)$1	1	13	40	13.2954
..(((((((........)))))))..)	chr2:97525560-97525833(-)$1	1	104	131	14.1776
((((((.((........)).).)))))	chr10:74035233-74035520(+)$1	1	1	28	14.2326
(((.(((((.........)))))))).	chr1:36789178-36789471(+)$1	1	49	76	10.0111
((((..(((........)))..)))))	chr16:31044909-31045190(+)$1	1	156	183	13.7373
(..((((((........)))))).).)	chr6:33172052-33172287(+)$1	1	38	65	12.7768
((((((((.........)).)))))))	chr7:127231547-127231822(+)$1	1	221	248	11.7097
.((((..((........))..)).)).	chr6:33171975-33172229(+)$1	1	47	74	12.7100
((((((..............)))))))	chr6:117996612-117996872(+)$1	1	37	64	10.7591
.(((.((((........)))).)))..	chr11:60658394-60658662(-)$1	1	152	179	13.1660
(((..((((........)))).)))))	chr4:2935788-2936044(-)$1	1	60	87	14.1282
(..(((..............)))..))	chr6:31698285-31698542(-)$1	1	74	101	9.7071
((.((((((........)).))))...	chr12:132402736-132402996(+)$1	1	169	196	13.7821
(((((((((........)))))))))(	chr5:126172483-126172764(+)$1	1	112	139	15.0891
((((((((((.......))))))))))	chr14:70238180-70238426(+)$1	1	62	89	10.0324

#PSSM
c : 0.14	e : 0.12	f : 0.12	g : 0.12	= : 0.10	! : 0.08	d : 0.05	h : 0.05	i : 0.05	[ : 0.03	b : 0.03	a : 0.03	% : 0.01	# : 0.01	
e : 0.14	c : 0.12	g : 0.12	= : 0.10	f : 0.08	! : 0.08	h : 0.07	b : 0.07	d : 0.05	[ : 0.05	i : 0.05	% : 0.01	" : 0.01	
g : 0.17	e : 0.15	c : 0.10	= : 0.10	f : 0.08	[ : 0.07	! : 0.07	b : 0.07	h : 0.05	i : 0.05	d : 0.03	" : 0.01	
g : 0.15	e : 0.14	[ : 0.10	! : 0.10	= : 0.10	f : 0.08	d : 0.07	c : 0.07	b : 0.05	i : 0.05	h : 0.03	" : 0.01	
g : 0.15	e : 0.15	! : 0.14	= : 0.10	b : 0.08	f : 0.08	c : 0.07	[ : 0.05	i : 0.05	h : 0.03	d : 0.03	a : 0.01	
d : 0.15	g : 0.14	! : 0.14	e : 0.10	= : 0.10	f : 0.07	b : 0.05	[ : 0.05	i : 0.05	a : 0.03	h : 0.03	c : 0.03	" : 0.01	
[ : 0.19	d : 0.15	c : 0.12	e : 0.08	! : 0.08	g : 0.07	= : 0.07	i : 0.05	h : 0.03	f : 0.03	w : 0.03	" : 0.01	a : 0.01	b : 0.01	
b : 0.28	d : 0.12	c : 0.12	[ : 0.07	e : 0.07	= : 0.07	g : 0.05	i : 0.05	a : 0.03	f : 0.03	w : 0.03	" : 0.01	h : 0.01	! : 0.01	
b : 0.26	d : 0.12	c : 0.12	a : 0.10	e : 0.07	= : 0.07	g : 0.05	i : 0.05	q : 0.03	f : 0.03	w : 0.03	h : 0.01	r : 0.01	
q : 0.70	r : 0.14	= : 0.07	p : 0.03	w : 0.03	c : 0.01	
q : 0.70	r : 0.14	p : 0.10	w : 0.03	o : 0.01	
q : 0.70	r : 0.14	p : 0.10	w : 0.03	o : 0.01	
q : 0.70	r : 0.14	p : 0.10	w : 0.03	o : 0.01	
q : 0.70	r : 0.14	p : 0.10	w : 0.03	o : 0.01	
q : 0.70	r : 0.14	p : 0.10	w : 0.03	o : 0.01	
q : 0.70	r : 0.14	p : 0.10	w : 0.03	o : 0.01	
q : 0.66	r : 0.14	p : 0.07	a : 0.03	b : 0.03	w : 0.03	c : 0.01	
b : 0.29	d : 0.12	r : 0.12	c : 0.10	= : 0.07	g : 0.05	i : 0.05	a : 0.05	e : 0.03	w : 0.03	] : 0.01	h : 0.01	f : 0.01	
b : 0.28	d : 0.12	c : 0.12	e : 0.07	= : 0.07	g : 0.05	a : 0.05	i : 0.05	2 : 0.05	f : 0.03	w : 0.03	] : 0.01	3 : 0.01	h : 0.01	
] : 0.21	d : 0.12	c : 0.10	e : 0.08	= : 0.08	2 : 0.08	g : 0.05	i : 0.05	f : 0.05	3 : 0.05	b : 0.03	w : 0.03	h : 0.01	
d : 0.17	g : 0.12	e : 0.12	= : 0.10	c : 0.07	f : 0.07	3 : 0.07	2 : 0.07	a : 0.05	i : 0.05	] : 0.03	h : 0.03	b : 0.01	
e : 0.14	g : 0.14	] : 0.10	= : 0.10	2 : 0.08	f : 0.08	c : 0.08	3 : 0.07	i : 0.05	d : 0.05	h : 0.03	b : 0.03	
g : 0.17	e : 0.15	= : 0.10	f : 0.10	c : 0.10	b : 0.07	3 : 0.05	2 : 0.05	i : 0.05	d : 0.05	h : 0.03	] : 0.01	a : 0.01	
g : 0.17	e : 0.14	= : 0.10	f : 0.10	] : 0.08	d : 0.07	c : 0.07	b : 0.05	h : 0.05	i : 0.05	3 : 0.03	2 : 0.03	[ : 0.01	
e : 0.14	] : 0.12	g : 0.12	= : 0.10	f : 0.10	c : 0.08	b : 0.07	h : 0.05	2 : 0.05	i : 0.05	a : 0.03	3 : 0.03	d : 0.01	
c : 0.12	f : 0.12	g : 0.12	e : 0.10	b : 0.10	= : 0.10	d : 0.05	h : 0.05	i : 0.05	] : 0.03	2 : 0.03	: : 0.01	[ : 0.01	a : 0.01	4 : 0.01	3 : 0.01	
g : 0.14	c : 0.12	e : 0.10	f : 0.10	= : 0.10	d : 0.08	2 : 0.07	h : 0.05	: : 0.05	b : 0.05	4 : 0.03	a : 0.01	D : 0.01	] : 0.01	3 : 0.01	

#score	710.5442417753267
#seq	57
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_transcript_m3_run2.txt

#BEAR
eeeeennnnneeeee	chr1:116941451-116941653(+)$1	202	178	193	12.4402
eeeeennnnneeeee	chr2:65243471-65243745(+)$1	274	213	228	12.4402
iiiiinnnnniiiii	chr8:99053912-99054145(-)$1	233	109	124	8.9601
eee[annnnna]eee	chr22:19035946-19036179(-)$1	233	41	56	11.0548
c[cccnnnnnccc]c	chr14:95059078-95059351(+)$1	273	110	125	8.8297
eeeeennnnneeeee	chrY:2713592-2713871(+)$1	279	93	108	12.4402
eeeeennnnneeeee	chr2:44176640-44176898(-)$1	258	167	182	12.4402
eeeeennnnneeeee	chr12:57556539-57556762(+)$1	223	202	217	12.4402
eeeeennnnneeeee	chr14:54419893-54420107(-)$1	214	52	67	12.4402
e[cccnnnnncccee	chrX:153226925-153227196(-)$1	271	115	130	10.2020
gggggnnnnnggggg	chr2:74692051-74692310(-)$1	259	209	224	9.1306
eeeeennnnneeeee	chr3:41281698-41281910(+)$1	212	30	45	12.4402
[ddddnnnnndddd]	chr2:39477499-39477743(-)$1	244	182	197	9.3006
ee[bbnnnnnbb]ee	chr7:148717958-148718166(-)$1	208	65	80	9.2962
eeeeennnnneeeee	chr3:184042570-184042797(+)$1	227	81	96	12.4402
""cccnnnnnccc33	chr7:99564309-99564578(-)$1	269	18	33	8.8232
!ddddnnnnndddd2	chr6:170112502-170112736(-)$1	234	167	182	9.1773
e[cccnnnnnccc]e	chr14:102451956-102452227(+)$1	271	4	19	9.8258
eeeeennnnneeeee	chr1:55315516-55315757(-)$1	241	211	226	12.4402
eeeeeooooooeeee	chr6:35437183-35437406(+)$1	223	141	156	9.0940
eecccnnnnnccc]e	chr16:18542723-18542987(-)$1	264	136	151	10.1507
eeeeennnnneeeee	chr6:159049358-159049586(+)$1	228	168	183	12.4402
eeeeennnnneeeee	chr9:125639651-125639929(-)$1	278	162	177	12.4402
eeeeennnnneeeee	chr3:122821157-122821377(+)$1	220	27	42	12.4402
gggggnnnnnggggg	chr9:74345526-74345814(-)$1	288	51	66	9.1306
eeeeennnnneeeee	chr1:1309277-1309524(-)$1	247	185	200	12.4402
ee[bbnnnnnbb]ee	chr2:112875343-112875632(+)$1	289	253	268	9.2962
eeeeennnnneeeee	chr1:156343573-156343822(+)$1	249	149	164	12.4402
eeeeennnnneeeee	chr14:62214019-62214292(+)$1	273	74	89	12.4402
eeeeeooooooeeee	chr16:23672482-23672703(+)$1	221	136	151	9.0940
eeeeeooooooeeee	chr15:81269827-81270081(-)$1	254	19	34	9.0940
!ddddnnnnndddd2	chr14:101198278-101198525(+)$1	247	12	27	9.1773
""cccnnnnnccc33	chr17:80559938-80560192(+)$1	254	117	132	8.8232
eeeeennnnneeeee	chr22:19384203-19384450(-)$1	247	128	143	12.4402
eeeeennnnneeeee	chr2:37520240-37520509(-)$1	269	175	190	12.4402
eeeeeooooooeeee	chr4:155508562-155508779(-)$1	217	149	164	9.0940
e[cccnnnnnccc22	chr3:184052859-184053098(+)$1	239	59	74	9.0608
eeeeennnnneeeee	chr20:1107967-1108206(+)$1	239	116	131	12.4402
!ddddnnnnndddd2	chr2:25455811-25456123(-)$1	312	65	80	9.1773
"ddddnnnnndddd3	chr4:74285230-74285438(+)$1	208	115	130	9.1937
eeeeennnnneeeee	chr17:16248885-16249183(-)$1	298	27	42	12.4402
eeeeennnnneeeee	chr15:72638861-72639104(-)$1	243	175	190	12.4402
eeeeeooooooeeee	chr13:96443616-96443878(+)$1	262	183	198	9.0940
eeeeeooooooeeee	chr2:47703506-47703791(+)$1	285	120	135	9.0940
!!cccnnnnnccc]e	chr6:56350098-56350344(-)$1	246	213	228	9.5409
eeeeennnnneeeee	chr1:116935457-116935675(+)$1	218	48	63	12.4402
eeeeennnnneeeee	chr2:10942537-10942775(-)$1	238	40	55	12.4402
eeeeeooooooeeee	chr11:47801799-47802101(-)$1	302	74	89	9.0940
eeeeennnnneeeee	chr9:114820680-114820936(-)$1	256	169	184	12.4402
ee[bbnnnnnbbeee	chr10:7768814-7769046(+)$1	232	140	155	9.7289
eeeeennnnneeeee	chr1:36366983-36367239(+)$1	256	206	221	12.4402
eeeeeooooooeeee	chr2:26617112-26617323(+)$1	211	112	127	9.0940
eeeeennnnneeeee	chr2:216292805-216293059(-)$1	254	119	134	12.4402
[ddddnnnnndddd]	chr2:242573015-242573311(-)$1	296	100	115	9.3006
eeeeennnnneeeee	chr5:14485148-14485406(+)$1	258	26	41	12.4402
gggggnnnnnggggg	chr12:9243900-9244107(-)$1	207	12	27	9.1306
eeeeeooooooeeee	chr7:91752396-91752729(-)$1	333	247	262	9.0940
!!cccnnnnnccc33	chr5:10402451-10402664(+)$1	213	109	124	9.1334
c[cccnnnnnccccc	chr19:59062861-59063144(-)$1	283	20	35	8.7185
[eeeeennnnneeee	chr8:146015641-146015846(-)$1	205	187	202	9.8032
eeeeennnnneeeee	chr18:29126461-29126714(+)$1	253	132	147	12.4402
eeeeeooooooeeee	chr10:102122274-102122489(+)$1	215	163	178	9.0940
eeeeennnnneeeee	chr8:22878868-22879155(-)$1	287	198	213	12.4402
eeeeeooooooeeee	chr13:113803368-113803634(+)$1	266	225	240	9.0940

#otherMatches

#Seq PSSM
UGAUAUUUAUUAUUG	chr1:116941451-116941653(+)$1	202	178	193	12.4402
CCAUGUUAUUCAUGG	chr2:65243471-65243745(+)$1	274	213	228	12.4402
AAAAGUAAACCUUUU	chr8:99053912-99054145(-)$1	233	109	124	8.9601
UCAAGGACAACGUGG	chr22:19035946-19036179(-)$1	233	41	56	11.0548
CUGGGGUGGGCCCUG	chr14:95059078-95059351(+)$1	273	110	125	8.8297
GAUGUCAUCAGCAUC	chrY:2713592-2713871(+)$1	279	93	108	12.4402
CAAUUUCGAUGAUUG	chr2:44176640-44176898(-)$1	258	167	182	12.4402
GACGCAGACGGCGUC	chr12:57556539-57556762(+)$1	223	202	217	12.4402
AGUUUGUUCAAGAUU	chr14:54419893-54420107(-)$1	214	52	67	12.4402
CUGGGUGCCUCUCGU	chrX:153226925-153227196(-)$1	271	115	130	10.2020
CCGGACCUCUUCUGG	chr2:74692051-74692310(-)$1	259	209	224	9.1306
GUGGAUCUAUUUCAU	chr3:41281698-41281910(+)$1	212	30	45	12.4402
UUAAUUCAUUGUUAU	chr2:39477499-39477743(-)$1	244	182	197	9.3006
UGGCUGACAAAGACA	chr7:148717958-148718166(-)$1	208	65	80	9.2962
CCUGUGAAUGGCAGG	chr3:184042570-184042797(+)$1	227	81	96	12.4402
AGCUGAACCACAGAA	chr7:99564309-99564578(-)$1	269	18	33	8.8232
UGAGCUCCCUGCUCU	chr6:170112502-170112736(-)$1	234	167	182	9.1773
UAAAAUAAAUUUUAA	chr14:102451956-102452227(+)$1	271	4	19	9.8258
GCCAGUUUCUUUGGC	chr1:55315516-55315757(-)$1	241	211	226	12.4402
GUUUUGCAUGUGAGA	chr6:35437183-35437406(+)$1	223	141	156	9.0940
CCCGUGAUGGAUGUG	chr16:18542723-18542987(-)$1	264	136	151	10.1507
CCUUUUCACUGGAGG	chr6:159049358-159049586(+)$1	228	168	183	12.4402
UCAGGAAGAGCUUGA	chr9:125639651-125639929(-)$1	278	162	177	12.4402
CAGCAGAUUUUGCUG	chr3:122821157-122821377(+)$1	220	27	42	12.4402
UGGGGCGAUACCCUG	chr9:74345526-74345814(-)$1	288	51	66	9.1306
GAGAACACGUUUCUU	chr1:1309277-1309524(-)$1	247	185	200	12.4402
AGGAUAAAUGAUGCU	chr2:112875343-112875632(+)$1	289	253	268	9.2962
aaauguuuaucauuu	chr1:156343573-156343822(+)$1	249	149	164	12.4402
AGGGAGUUUAUCCCU	chr14:62214019-62214292(+)$1	273	74	89	12.4402
GGCUGGCAAAGCAGC	chr16:23672482-23672703(+)$1	221	136	151	9.0940
GCCACACCCUGGUGG	chr15:81269827-81270081(-)$1	254	19	34	9.0940
AUAGAGCCAUUUUAA	chr14:101198278-101198525(+)$1	247	12	27	9.1773
UCAGCAUGUGGCUCG	chr17:80559938-80560192(+)$1	254	117	132	8.8232
GCCUUUUGAUGAGGU	chr22:19384203-19384450(-)$1	247	128	143	12.4402
GCUGAUUACCUCAGC	chr2:37520240-37520509(-)$1	269	175	190	12.4402
UUUCUGAGUAGAGGG	chr4:155508562-155508779(-)$1	217	149	164	9.0940
UAUAUUAUAUAUAAA	chr3:184052859-184053098(+)$1	239	59	74	9.0608
CAAGUGGCAGACUUG	chr20:1107967-1108206(+)$1	239	116	131	12.4402
GUGGGAUUCAUCCAG	chr2:25455811-25456123(-)$1	312	65	80	9.1773
UUGCCGAGGAGGUAC	chr4:74285230-74285438(+)$1	208	115	130	9.1937
GUUCUGUUUGGGGAC	chr17:16248885-16249183(-)$1	298	27	42	12.4402
CCGUAUAUCCUAUGG	chr15:72638861-72639104(-)$1	243	175	190	12.4402
GUGCAUGUGUUUGCA	chr13:96443616-96443878(+)$1	262	183	198	9.0940
AGCCCGAGUAGGGGC	chr2:47703506-47703791(+)$1	285	120	135	9.0940
GAAUCUGAUCGAUAA	chr6:56350098-56350344(-)$1	246	213	228	9.5409
GCACUCUUAAAGUGC	chr1:116935457-116935675(+)$1	218	48	63	12.4402
GAAUGGUCUGUAUUC	chr2:10942537-10942775(-)$1	238	40	55	12.4402
UGUUUUCAAAUAAAC	chr11:47801799-47802101(-)$1	302	74	89	9.0940
CCCUUGAAAAGAGGG	chr9:114820680-114820936(-)$1	256	169	184	12.4402
GAAGACCAUUUCUCU	chr10:7768814-7769046(+)$1	232	140	155	9.7289
GCCUGGUCAGUGGGC	chr1:36366983-36367239(+)$1	256	206	221	12.4402
cacuccagccagagu	chr2:26617112-26617323(+)$1	211	112	127	9.0940
GUGUGAGAGGCACAC	chr2:216292805-216293059(-)$1	254	119	134	12.4402
AGCAGAGGAGCUGCA	chr2:242573015-242573311(-)$1	296	100	115	9.3006
AAGGUGAGUUGCCUU	chr5:14485148-14485406(+)$1	258	26	41	12.4402
AGGGAUUCUCUCCCU	chr12:9243900-9244107(-)$1	207	12	27	9.1306
ACAGAAAACAGUCUG	chr7:91752396-91752729(-)$1	333	247	262	9.0940
UAAGGUAAUUCCUGU	chr5:10402451-10402664(+)$1	213	109	124	9.1334
CUCGCUUAGUGUGGC	chr19:59062861-59063144(-)$1	283	20	35	8.7185
GUCCCUGCAGGAGGG	chr8:146015641-146015846(-)$1	205	187	202	9.8032
CUGGCCCUCUGCCAG	chr18:29126461-29126714(+)$1	253	132	147	12.4402
GCCACUUUCACGUGG	chr10:102122274-102122489(+)$1	215	163	178	9.0940
GAGUAGAUGGUGCUU	chr8:22878868-22879155(-)$1	287	198	213	12.4402
GCAGGAGGAUGCCUG	chr13:113803368-113803634(+)$1	266	225	240	9.0940

#DB
(((((.....)))))	chr1:116941451-116941653(+)$1	1	178	193	12.4402
(((((.....)))))	chr2:65243471-65243745(+)$1	1	213	228	12.4402
(((((.....)))))	chr8:99053912-99054145(-)$1	1	109	124	8.9601
(((.(.....).)))	chr22:19035946-19036179(-)$1	1	41	56	11.0548
(.(((.....))).)	chr14:95059078-95059351(+)$1	1	110	125	8.8297
(((((.....)))))	chrY:2713592-2713871(+)$1	1	93	108	12.4402
(((((.....)))))	chr2:44176640-44176898(-)$1	1	167	182	12.4402
(((((.....)))))	chr12:57556539-57556762(+)$1	1	202	217	12.4402
(((((.....)))))	chr14:54419893-54420107(-)$1	1	52	67	12.4402
(.(((.....)))))	chrX:153226925-153227196(-)$1	1	115	130	10.2020
(((((.....)))))	chr2:74692051-74692310(-)$1	1	209	224	9.1306
(((((.....)))))	chr3:41281698-41281910(+)$1	1	30	45	12.4402
.((((.....)))).	chr2:39477499-39477743(-)$1	1	182	197	9.3006
((.((.....)).))	chr7:148717958-148718166(-)$1	1	65	80	9.2962
(((((.....)))))	chr3:184042570-184042797(+)$1	1	81	96	12.4402
..(((.....)))..	chr7:99564309-99564578(-)$1	1	18	33	8.8232
.((((.....)))).	chr6:170112502-170112736(-)$1	1	167	182	9.1773
(.(((.....))).)	chr14:102451956-102452227(+)$1	1	4	19	9.8258
(((((.....)))))	chr1:55315516-55315757(-)$1	1	211	226	12.4402
(((((......))))	chr6:35437183-35437406(+)$1	1	141	156	9.0940
(((((.....))).)	chr16:18542723-18542987(-)$1	1	136	151	10.1507
(((((.....)))))	chr6:159049358-159049586(+)$1	1	168	183	12.4402
(((((.....)))))	chr9:125639651-125639929(-)$1	1	162	177	12.4402
(((((.....)))))	chr3:122821157-122821377(+)$1	1	27	42	12.4402
(((((.....)))))	chr9:74345526-74345814(-)$1	1	51	66	9.1306
(((((.....)))))	chr1:1309277-1309524(-)$1	1	185	200	12.4402
((.((.....)).))	chr2:112875343-112875632(+)$1	1	253	268	9.2962
(((((.....)))))	chr1:156343573-156343822(+)$1	1	149	164	12.4402
(((((.....)))))	chr14:62214019-62214292(+)$1	1	74	89	12.4402
(((((......))))	chr16:23672482-23672703(+)$1	1	136	151	9.0940
(((((......))))	chr15:81269827-81270081(-)$1	1	19	34	9.0940
.((((.....)))).	chr14:101198278-101198525(+)$1	1	12	27	9.1773
..(((.....)))..	chr17:80559938-80560192(+)$1	1	117	132	8.8232
(((((.....)))))	chr22:19384203-19384450(-)$1	1	128	143	12.4402
(((((.....)))))	chr2:37520240-37520509(-)$1	1	175	190	12.4402
(((((......))))	chr4:155508562-155508779(-)$1	1	149	164	9.0940
(.(((.....)))..	chr3:184052859-184053098(+)$1	1	59	74	9.0608
(((((.....)))))	chr20:1107967-1108206(+)$1	1	116	131	12.4402
.((((.....)))).	chr2:25455811-25456123(-)$1	1	65	80	9.1773
.((((.....)))).	chr4:74285230-74285438(+)$1	1	115	130	9.1937
(((((.....)))))	chr17:16248885-16249183(-)$1	1	27	42	12.4402
(((((.....)))))	chr15:72638861-72639104(-)$1	1	175	190	12.4402
(((((......))))	chr13:96443616-96443878(+)$1	1	183	198	9.0940
(((((......))))	chr2:47703506-47703791(+)$1	1	120	135	9.0940
..(((.....))).)	chr6:56350098-56350344(-)$1	1	213	228	9.5409
(((((.....)))))	chr1:116935457-116935675(+)$1	1	48	63	12.4402
(((((.....)))))	chr2:10942537-10942775(-)$1	1	40	55	12.4402
(((((......))))	chr11:47801799-47802101(-)$1	1	74	89	9.0940
(((((.....)))))	chr9:114820680-114820936(-)$1	1	169	184	12.4402
((.((.....)))))	chr10:7768814-7769046(+)$1	1	140	155	9.7289
(((((.....)))))	chr1:36366983-36367239(+)$1	1	206	221	12.4402
(((((......))))	chr2:26617112-26617323(+)$1	1	112	127	9.0940
(((((.....)))))	chr2:216292805-216293059(-)$1	1	119	134	12.4402
.((((.....)))).	chr2:242573015-242573311(-)$1	1	100	115	9.3006
(((((.....)))))	chr5:14485148-14485406(+)$1	1	26	41	12.4402
(((((.....)))))	chr12:9243900-9244107(-)$1	1	12	27	9.1306
(((((......))))	chr7:91752396-91752729(-)$1	1	247	262	9.0940
..(((.....)))..	chr5:10402451-10402664(+)$1	1	109	124	9.1334
(.(((.....)))))	chr19:59062861-59063144(-)$1	1	20	35	8.7185
.(((((.....))))	chr8:146015641-146015846(-)$1	1	187	202	9.8032
(((((.....)))))	chr18:29126461-29126714(+)$1	1	132	147	12.4402
(((((......))))	chr10:102122274-102122489(+)$1	1	163	178	9.0940
(((((.....)))))	chr8:22878868-22879155(-)$1	1	198	213	12.4402
(((((......))))	chr13:113803368-113803634(+)$1	1	225	240	9.0940

#PSSM
e : 0.73	! : 0.07	g : 0.04	[ : 0.04	" : 0.04	c : 0.03	i : 0.01	
e : 0.70	d : 0.09	[ : 0.07	g : 0.04	" : 0.03	! : 0.03	i : 0.01	
e : 0.64	c : 0.15	d : 0.09	g : 0.04	[ : 0.04	i : 0.01	
e : 0.62	c : 0.15	d : 0.09	g : 0.04	b : 0.04	i : 0.01	[ : 0.01	
e : 0.62	c : 0.15	d : 0.09	g : 0.04	b : 0.04	i : 0.01	a : 0.01	
n : 0.81	o : 0.17	e : 0.01	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
n : 0.82	o : 0.17	
e : 0.43	o : 0.17	c : 0.15	d : 0.09	g : 0.04	b : 0.04	i : 0.01	a : 0.01	n : 0.01	
e : 0.62	c : 0.15	d : 0.09	g : 0.04	b : 0.04	i : 0.01	] : 0.01	
e : 0.65	c : 0.15	d : 0.09	g : 0.04	] : 0.03	i : 0.01	
e : 0.70	d : 0.09	] : 0.06	g : 0.04	3 : 0.04	i : 0.01	2 : 0.01	c : 0.01	
e : 0.75	3 : 0.06	2 : 0.06	g : 0.04	c : 0.03	] : 0.03	i : 0.01	

#score	682.3295334196655
#seq	64
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_transcript_m3_run2.txt

#BEAR
eeee!!a[a[bbmmmmbb]a]a22eeeee	chr9:136801652-136801904(-)$1	252	70	99	12.4407
=======[bboooooobb]==========	chr5:149825093-149825324(-)$1	231	173	202	10.8725
bb[eeeeecccnnnnnccc333eeeee]b	chr11:2159488-2159695(-)$1	207	177	206	8.5535
gg[eeeee[ddddllldddd22eeeee]g	chr11:2152325-2152531(-)$1	206	27	56	9.7214
hhhhh"""bbbbmmmmbb]bb333hhhhh	chr11:61096856-61097122(-)$1	266	94	123	11.1525
!!eeeee!!cccnnnnnccc22eeeee22	chr2:21234642-21234847(-)$1	205	16	45	9.2434
cc[ccc[ccc[bblllbb]cccccc]ccc	chr11:2154678-2154880(-)$1	202	95	124	10.7818
c"""eeeee[cccmmmmccc22eeeeecc	chr11:2150929-2151139(-)$1	210	13	42	9.9715
ggggggga!!bbmmmmbb22a]ggggggg	chr1:92148926-92149198(-)$1	272	76	105	12.4869
=========[bbmmmmbb==========c	chr5:10679879-10680220(-)$1	341	84	113	13.1248
eeee!!a[a[bbmmmmbb]a]a22eeeee	chr9:136801704-136801973(-)$1	269	139	168	12.4407
!gggggggbboooooobb]ggggggg]cc	chr20:43129621-43129876(-)$1	255	74	103	9.7710
ffffbb####bbmmmmbb333bb]fffff	chr12:120637143-120637364(-)$1	221	125	154	10.9243
gg[cccbb[a[bblllbb]a]bb]ccc]g	chr9:136717843-136718129(-)$1	286	77	106	10.0474
c####eeeeebboooooobb22eeeeecc	chr7:103141196-103141414(-)$1	218	182	211	9.4293
===="""eeeeemmmmeeeee========	chr16:2649298-2649544(+)$1	246	129	158	10.6411
!dddd!!cccbbmmmmbb]ccc]dddd22	chr16:58594061-58594288(-)$1	227	109	138	11.4944
!cccaeeeee[bblllbb]eeeee]a22c	chr11:2151075-2151277(-)$1	202	134	163	9.6391
gg[eeeee[ddddllldddd22eeeee]g	chr11:2152331-2152533(-)$1	202	29	58	9.7214
gggggg!!a[bbmmmmbb]a22ggggggg	chr5:149823785-149823992(-)$1	207	93	122	14.3459
iadddd[cccbbmmmmbb]ccc]dddd]a	chr11:2159370-2159573(-)$1	203	148	177	11.4384
cc[bb[ddddbbmmmmbb]dddd]bb]cc	chr8:38775433-38775794(+)$1	361	219	248	10.5669
cceeeee[cccooooooccc22eeeee]c	chr15:65868781-65869037(+)$1	256	143	172	10.0747
d[bb"""bb[bbmmmmbb]bb]bb]dddd	chr3:41277739-41277943(+)$1	204	11	40	10.3358
gggggg[ddddnnnnndddd22ggggggg	chr17:34052103-34052355(+)$1	252	16	45	9.1467
ee"""ddddcccmmmmccc]ddddeeeee	chr9:136715710-136715962(-)$1	252	128	157	9.5646
gggggg!!a[bbmmmmbb]a22ggggggg	chr5:149823792-149824004(-)$1	212	105	134	14.3459
[bb!!eeeeebbmmmmbb]eeeee22bb]	chr17:75465480-75465764(+)$1	284	192	221	10.2367
[ccc####ddddmmmmdddd22ccc]ccc	chr9:108118391-108118697(+)$1	306	181	210	11.9407
fccc[eeeee[bblllbb]eeeee]ccc]	chr1:36820732-36820999(-)$1	267	168	197	9.6222
!ccc####ddddmmmmdddd22ccc]eee	chr1:24019139-24019350(+)$1	211	102	131	11.7736
gggggg[eeeeemmmmeeeee]ggggggg	chr3:49137524-49137793(-)$1	269	187	216	9.9886
ffff"""bbcccmmmmccc]bb333ffff	chr8:38776103-38776456(+)$1	353	122	151	9.5507
cc!!ccc[ddddmmmmdddd]ccc22ccc	chr20:34819295-34819554(+)$1	259	24	53	10.4322
gggggg!!a[bbmmmmbb]a22ggggggg	chr5:149823753-149823985(-)$1	232	86	115	14.3459
bb!!ccc!!cccmmmmccc22cccbbccc	chr22:50717304-50717537(-)$1	233	77	106	10.5473
dddccc####bbmmmmbb4444ccc333d	chr16:10626018-10626261(-)$1	243	137	166	12.5341
ggggg[cccccclllccc]ccc]gggggg	chr8:48805740-48805997(-)$1	257	194	223	9.9685
ccc####ccc[ammmmaccc333ccc333	chr15:99434587-99434840(+)$1	253	154	183	12.6856
""ccc"""ddddmmmmdddd333ccc333	chr2:32800141-32800371(+)$1	230	127	156	12.1203
==!!bb!!a[bbmmmmbba22bb333===	chr20:60962831-60963051(+)$1	220	49	78	12.6434
ddd!!eeeeebbmmmmbb]eeeee]dddd	chr9:136798186-136798522(-)$1	336	303	332	10.8101
!!eeeee!!cccnnnnnccc22eeeee22	chr2:21234656-21234865(-)$1	209	34	63	9.2434
iiiiiiii[cccmmmmccc]iiiiiiiii	chr19:4034955-4035226(+)$1	271	133	162	11.4848
!!ccc[ddddbbmmmmbb22ddddccc]d	chr2:10453287-10453579(+)$1	292	143	172	11.0355
dd"""ccc!!bboooooobb22ccc]ddd	chr11:8707124-8707332(+)$1	208	6	35	9.3414
cccdddd[ddddmmmmdddd22dddd]cc	chr16:81610227-81610551(+)$1	324	149	178	10.2591
ddddccc[acccmmmmccc]a]ccc22dd	chr1:31902256-31902485(+)$1	229	62	91	10.0556
ee[ccc"""cccmmmmccc]ccc22eeee	chr1:173456953-173457219(+)$1	266	147	176	10.7473
hh[dddd[ddddmmmmdddd333ddddhh	chr2:228678538-228678758(+)$1	220	43	72	10.1048
ccc[bb!!ddddmmmmdddd]bb]ccc]a	chr11:2150820-2151025(-)$1	205	14	43	10.1185
[ccc!!acccnnnnnccc]a22ccceeee	chr1:161192029-161192255(-)$1	226	40	69	8.7419
""ggggggg[bbmmmmbb]ggggggg333	chr17:33953629-33953919(+)$1	290	91	120	12.5715
cc[bba[cccbbmmmmbb]ccc]a]bb]c	chr11:2152261-2152464(-)$1	203	100	129	11.6407
====####bb[bblllbb]bb========	chr2:61441239-61441564(-)$1	325	188	217	10.9850

#otherMatches

#Seq PSSM
GGCUGAGCUGAGGAGACUGGAUGAGGUCC	chr9:136801652-136801904(-)$1	252	70	99	12.4407
AAUGCUUGGGUUUAUUUUGAAGCAUUGGC	chr5:149825093-149825324(-)$1	231	173	202	10.8725
CCCGCUGUUCGGUUUGCGACACGCAGCAG	chr11:2159488-2159695(-)$1	207	177	206	8.5535
UGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152325-2152531(-)$1	206	27	56	9.7214
GCAUUAUUGGCAUCAUUGACCCUGAGUGC	chr11:61096856-61097122(-)$1	266	94	123	11.1525
AAUAGUGGUGCUCACAAGGCGACACUAAG	chr2:21234642-21234847(-)$1	205	16	45	9.2434
UCCGAGAGGGACGUGUCGACCCCUCCGAC	chr11:2154678-2154880(-)$1	202	95	124	10.7818
GGUCUGGUGAUGCCAUAGCAGCCACCACC	chr11:2150929-2151139(-)$1	210	13	42	9.9715
CCCAGGGCUAGUAUAAACAUGACCCUGGG	chr1:92148926-92149198(-)$1	272	76	105	12.4869
UUUUUAGAUGAGUUUCCUGUCUAGAGAUG	chr5:10679879-10680220(-)$1	341	84	113	13.1248
GGCUGAGCUGAGGAGACUGGAUGAGGUCC	chr9:136801704-136801973(-)$1	269	139	168	12.4407
GAGGGAGUGCAGUAUAGCUACUCCUUAUU	chr20:43129621-43129876(-)$1	255	74	103	9.7710
UGGGCUCCAAGCAGAUGCAGCAGAUCCGC	chr12:120637143-120637364(-)$1	221	125	154	10.9243
auuggccaGUGCAACCUGGGGUGAGUCUA	chr9:136717843-136718129(-)$1	286	77	106	10.0474
GAUACUCAGGGCCAAACUGCUACUUGACC	chr7:103141196-103141414(-)$1	218	182	211	9.4293
UGGGAGGGGGCAGAGAUGUUCCCCAGGCC	chr16:2649298-2649544(+)$1	246	129	158	10.6411
UGGAGUUAUGCCAAAAGGACGUCCUCCUA	chr16:58594061-58594288(-)$1	227	109	138	11.4944
GGGCCCCGGAGCCCACGGGUCUGGUGAUG	chr11:2151075-2151277(-)$1	202	134	163	9.6391
UGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152331-2152533(-)$1	202	29	58	9.7214
CCCUCUGACAGCACUCGCAGGAAGGGGGG	chr5:149823785-149823992(-)$1	207	93	122	14.3459
ggcuggggcggcgcgggcuugcgccggac	chr11:2159370-2159573(-)$1	203	148	177	11.4384
ACAGGGUUAGCCUCCAGGCCUAGGCUCGU	chr8:38775433-38775794(+)$1	361	219	248	10.5669
GUUCAUUCUUGUGUAUUCAGUUAAUGACA	chr15:65868781-65869037(+)$1	256	143	172	10.0747
UCUGAAUUGGGAAUGUUUGCACCACAGUG	chr3:41277739-41277943(+)$1	204	11	40	10.3358
AGAGGUUCAGGCAGUUCCUGUCAUCUCUG	chr17:34052103-34052355(+)$1	252	16	45	9.1467
UCCAGGUGACCCCAGUGGGCUCACGGGGC	chr9:136715710-136715962(-)$1	252	128	157	9.5646
CCCUCUGACAGCACUCGCAGGAAGGGGGG	chr5:149823792-149824004(-)$1	212	105	134	14.3459
GUGCUGCAUCCCCCCAGGCGGUGUUCCAG	chr17:75465480-75465764(+)$1	284	192	221	10.2367
UUGUCAGUGACAAUAGUGUCUUACACAGG	chr9:108118391-108118697(+)$1	306	181	210	11.9407
CCGCGUGGUGGAGGCCCUGCACCAGGUGA	chr1:36820732-36820999(-)$1	267	168	197	9.6222
UUCCAAAGGUGAGUAGUCACAAGGACAUA	chr1:24019139-24019350(+)$1	211	102	131	11.7736
GCAUCUGGGUUUGGGUGGGCCAAGGUGCU	chr3:49137524-49137793(-)$1	269	187	216	9.9886
caugcaccucauacacaugcagacacaug	chr8:38776103-38776456(+)$1	353	122	151	9.5507
uugugccagggacuauucucaggcugaag	chr20:34819295-34819554(+)$1	259	24	53	10.4322
CCCUCUGACAGCACUCGCAGGAAGGGGGG	chr5:149823753-149823985(-)$1	232	86	115	14.3459
CAUCCCGGAUGUCUCGGCAGACGGUGAGC	chr22:50717304-50717537(-)$1	233	77	106	10.5473
GUCAUCCUUAACCUGCGUGCCAGAUUUAG	chr16:10626018-10626261(-)$1	243	137	166	12.5341
CAGCCUGCAGGCCACGCUAUGCUGGCUGG	chr8:48805740-48805997(-)$1	257	194	223	9.9685
GUGGACCGUGACUUCUGCGCCAACAUCCU	chr15:99434587-99434840(+)$1	253	154	183	12.6856
AUUGCUUCGGGCCAUUGCUUCUUGUGCUG	chr2:32800141-32800371(+)$1	230	127	156	12.1203
CCCUUCUUCUCUUUCUAGGUUGACAAGGU	chr20:60962831-60963051(+)$1	220	49	78	12.6434
AGGGAUGGCCCCAUGUGGAGGCUGGUUUG	chr9:136798186-136798522(-)$1	336	303	332	10.8101
AAUAGUGGUGCUCACAAGGCGACACUAAG	chr2:21234656-21234865(-)$1	209	34	63	9.2434
AGGGCUGUGCUACGCCUGGGGCGGCCCUG	chr19:4034955-4035226(+)$1	271	133	162	11.4848
uuagguaggacccuguggauuucuccuug	chr2:10453287-10453579(+)$1	292	143	172	11.0355
GAUUUAGAAAGUGGGUUGGCAGUCUUUCC	chr11:8707124-8707332(+)$1	208	6	35	9.3414
gacuuucuagcuguguagcuuugagaugu	chr16:81610227-81610551(+)$1	324	149	178	10.2591
CCCAGUGGUGGGAUGCCCCGAGCAUUGUG	chr1:31902256-31902485(+)$1	229	62	91	10.0556
CAAGGUUUUUAGGUUGCUAUACCAAUGGC	chr1:173456953-173457219(+)$1	266	147	176	10.7473
ACUGGGUACUCAACACUGAGCAGAUCUGU	chr2:228678538-228678758(+)$1	220	43	72	10.1048
CAGCCCGACUAGCAGUCUAGAGGCCUGAG	chr11:2150820-2151025(-)$1	205	14	43	10.1185
ACACAGCCUGCCACCCAGUGAAGUGUCCA	chr1:161192029-161192255(-)$1	226	40	69	8.7419
UCUAGAAUUGUUACCUAAGGAUUCUGACU	chr17:33953629-33953919(+)$1	290	91	120	12.5715
UGAGGCUGGCCUCCUUGGCGCCUGUCCCC	chr11:2152261-2152464(-)$1	203	100	129	11.6407
UCCUUGCUGACCAUGAUGAUCAGGAUGUG	chr2:61441239-61441564(-)$1	325	188	217	10.9850

#DB
((((..(.(.((....)).).)..)))))	chr9:136801652-136801904(-)$1	1	70	99	12.4407
(((((((.((......)).))))))))))	chr5:149825093-149825324(-)$1	1	173	202	10.8725
((.((((((((.....)))...))))).)	chr11:2159488-2159695(-)$1	1	177	206	8.5535
((.(((((.((((...))))..))))).)	chr11:2152325-2152531(-)$1	1	27	56	9.7214
(((((...((((....)).))...)))))	chr11:61096856-61097122(-)$1	1	94	123	11.1525
..(((((..(((.....)))..)))))..	chr2:21234642-21234847(-)$1	1	16	45	9.2434
((.(((.(((.((...)).)))))).)))	chr11:2154678-2154880(-)$1	1	95	124	10.7818
(...(((((.(((....)))..)))))))	chr11:2150929-2151139(-)$1	1	13	42	9.9715
((((((((..((....))..).)))))))	chr1:92148926-92149198(-)$1	1	76	105	12.4869
(((((((((.((....))))))))))))(	chr5:10679879-10680220(-)$1	1	84	113	13.1248
((((..(.(.((....)).).)..)))))	chr9:136801704-136801973(-)$1	1	139	168	12.4407
.(((((((((......)).))))))).))	chr20:43129621-43129876(-)$1	1	74	103	9.7710
((((((....((....))...)).)))))	chr12:120637143-120637364(-)$1	1	125	154	10.9243
((.(((((.(.((...)).).)).))).)	chr9:136717843-136718129(-)$1	1	77	106	10.0474
(....(((((((......))..)))))))	chr7:103141196-103141414(-)$1	1	182	211	9.4293
((((...(((((....)))))))))))))	chr16:2649298-2649544(+)$1	1	129	158	10.6411
.((((..(((((....)).))).))))..	chr16:58594061-58594288(-)$1	1	109	138	11.4944
.(((((((((.((...)).))))).)..)	chr11:2151075-2151277(-)$1	1	134	163	9.6391
((.(((((.((((...))))..))))).)	chr11:2152331-2152533(-)$1	1	29	58	9.7214
((((((..(.((....)).)..)))))))	chr5:149823785-149823992(-)$1	1	93	122	14.3459
((((((.(((((....)).))).)))).)	chr11:2159370-2159573(-)$1	1	148	177	11.4384
((.((.((((((....)).)))).)).))	chr8:38775433-38775794(+)$1	1	219	248	10.5669
(((((((.(((......)))..))))).)	chr15:65868781-65869037(+)$1	1	143	172	10.0747
(.((...((.((....)).)).)).))))	chr3:41277739-41277943(+)$1	1	11	40	10.3358
((((((.((((.....))))..)))))))	chr17:34052103-34052355(+)$1	1	16	45	9.1467
((...(((((((....))).)))))))))	chr9:136715710-136715962(-)$1	1	128	157	9.5646
((((((..(.((....)).)..)))))))	chr5:149823792-149824004(-)$1	1	105	134	14.3459
.((..(((((((....)).)))))..)).	chr17:75465480-75465764(+)$1	1	192	221	10.2367
.(((....((((....))))..))).)))	chr9:108118391-108118697(+)$1	1	181	210	11.9407
((((.(((((.((...)).))))).))).	chr1:36820732-36820999(-)$1	1	168	197	9.6222
.(((....((((....))))..))).)))	chr1:24019139-24019350(+)$1	1	102	131	11.7736
((((((.(((((....))))).)))))))	chr3:49137524-49137793(-)$1	1	187	216	9.9886
((((...(((((....))).))...))))	chr8:38776103-38776456(+)$1	1	122	151	9.5507
((..(((.((((....)))).)))..)))	chr20:34819295-34819554(+)$1	1	24	53	10.4322
((((((..(.((....)).)..)))))))	chr5:149823753-149823985(-)$1	1	86	115	14.3459
((..(((..(((....)))..))))))))	chr22:50717304-50717537(-)$1	1	77	106	10.5473
((((((....((....))....)))...)	chr16:10626018-10626261(-)$1	1	137	166	12.5341
(((((.((((((...))).))).))))))	chr8:48805740-48805997(-)$1	1	194	223	9.9685
(((....(((.(....))))...)))...	chr15:99434587-99434840(+)$1	1	154	183	12.6856
..(((...((((....))))...)))...	chr2:32800141-32800371(+)$1	1	127	156	12.1203
((..((..(.((....)))..))...)))	chr20:60962831-60963051(+)$1	1	49	78	12.6434
(((..(((((((....)).))))).))))	chr9:136798186-136798522(-)$1	1	303	332	10.8101
..(((((..(((.....)))..)))))..	chr2:21234656-21234865(-)$1	1	34	63	9.2434
((((((((.(((....))).)))))))))	chr19:4034955-4035226(+)$1	1	133	162	11.4848
..(((.((((((....))..))))))).)	chr2:10453287-10453579(+)$1	1	143	172	11.0355
((...(((..((......))..))).)))	chr11:8707124-8707332(+)$1	1	6	35	9.3414
(((((((.((((....))))..)))).))	chr16:81610227-81610551(+)$1	1	149	178	10.2591
(((((((.((((....))).).)))..))	chr1:31902256-31902485(+)$1	1	62	91	10.0556
((.(((...(((....))).)))..))))	chr1:173456953-173457219(+)$1	1	147	176	10.7473
((.((((.((((....))))...))))))	chr2:228678538-228678758(+)$1	1	43	72	10.1048
(((.((..((((....)))).)).))).)	chr11:2150820-2151025(-)$1	1	14	43	10.1185
.(((..((((.....))).)..)))))))	chr1:161192029-161192255(-)$1	1	40	69	8.7419
..(((((((.((....)).)))))))...	chr17:33953629-33953919(+)$1	1	91	120	12.5715
((.(((.(((((....)).))).).)).)	chr11:2152261-2152464(-)$1	1	100	129	11.6407
((((....((.((...)).))))))))))	chr2:61441239-61441564(-)$1	1	188	217	10.9850

#PSSM
g : 0.18	c : 0.18	! : 0.12	= : 0.09	d : 0.09	e : 0.07	f : 0.05	[ : 0.05	b : 0.03	h : 0.03	i : 0.03	" : 0.03	
c : 0.23	g : 0.20	= : 0.09	d : 0.09	e : 0.07	b : 0.05	! : 0.05	" : 0.05	h : 0.03	f : 0.03	# : 0.01	a : 0.01	[ : 0.01	i : 0.01	
c : 0.18	[ : 0.16	g : 0.16	e : 0.09	d : 0.09	= : 0.07	" : 0.05	! : 0.05	f : 0.03	b : 0.03	h : 0.01	# : 0.01	i : 0.01	
c : 0.20	g : 0.16	e : 0.14	d : 0.09	! : 0.09	= : 0.07	" : 0.05	b : 0.05	f : 0.03	# : 0.03	h : 0.01	i : 0.01	[ : 0.01	
c : 0.16	g : 0.16	e : 0.12	! : 0.09	b : 0.09	# : 0.09	" : 0.09	d : 0.07	= : 0.03	h : 0.01	a : 0.01	[ : 0.01	i : 0.01	
e : 0.21	c : 0.14	g : 0.14	" : 0.09	! : 0.07	d : 0.07	# : 0.07	b : 0.05	[ : 0.05	= : 0.03	i : 0.01	a : 0.01	
e : 0.21	" : 0.10	# : 0.10	! : 0.10	[ : 0.09	d : 0.09	c : 0.09	a : 0.05	g : 0.05	= : 0.03	b : 0.01	i : 0.01	
e : 0.20	[ : 0.14	! : 0.14	c : 0.14	# : 0.09	d : 0.07	" : 0.05	b : 0.05	g : 0.03	a : 0.01	= : 0.01	i : 0.01	
d : 0.20	c : 0.16	e : 0.14	a : 0.12	b : 0.10	! : 0.09	[ : 0.07	# : 0.03	= : 0.01	" : 0.01	g : 0.01	
c : 0.30	d : 0.21	[ : 0.18	e : 0.12	b : 0.07	! : 0.03	# : 0.03	a : 0.01	
b : 0.40	c : 0.21	d : 0.18	[ : 0.10	o : 0.03	e : 0.03	n : 0.01	
b : 0.49	c : 0.18	d : 0.16	o : 0.05	n : 0.05	e : 0.03	a : 0.01	
m : 0.65	o : 0.09	n : 0.09	b : 0.09	d : 0.03	c : 0.01	l : 0.01	
m : 0.67	l : 0.14	o : 0.09	n : 0.09	
m : 0.67	l : 0.14	o : 0.09	n : 0.09	
m : 0.67	l : 0.12	o : 0.09	n : 0.07	c : 0.03	
b : 0.49	d : 0.18	c : 0.16	o : 0.05	n : 0.03	e : 0.03	m : 0.01	a : 0.01	
b : 0.49	c : 0.25	d : 0.18	o : 0.03	e : 0.03	
] : 0.41	c : 0.21	d : 0.18	2 : 0.03	b : 0.03	e : 0.03	= : 0.01	3 : 0.01	4 : 0.01	a : 0.01	
d : 0.20	c : 0.18	a : 0.12	e : 0.10	b : 0.09	] : 0.09	2 : 0.07	= : 0.03	3 : 0.03	g : 0.03	4 : 0.01	
2 : 0.32	c : 0.10	e : 0.10	] : 0.09	3 : 0.09	b : 0.07	d : 0.05	= : 0.03	a : 0.03	g : 0.03	4 : 0.01	i : 0.01	
2 : 0.29	c : 0.14	3 : 0.09	b : 0.09	= : 0.07	] : 0.07	e : 0.07	d : 0.05	a : 0.03	g : 0.03	4 : 0.01	i : 0.01	
e : 0.21	c : 0.18	g : 0.14	3 : 0.09	b : 0.09	= : 0.07	] : 0.07	d : 0.07	2 : 0.03	i : 0.01	
e : 0.21	c : 0.20	g : 0.16	d : 0.10	= : 0.07	] : 0.07	2 : 0.05	3 : 0.05	b : 0.01	i : 0.01	a : 0.01	
c : 0.21	e : 0.20	g : 0.16	] : 0.09	= : 0.07	d : 0.07	2 : 0.05	b : 0.03	3 : 0.03	h : 0.01	f : 0.01	i : 0.01	
e : 0.23	g : 0.16	c : 0.10	d : 0.10	= : 0.07	] : 0.07	b : 0.05	2 : 0.05	f : 0.03	3 : 0.03	h : 0.01	a : 0.01	i : 0.01	
e : 0.25	c : 0.14	g : 0.12	d : 0.10	= : 0.09	3 : 0.07	] : 0.05	f : 0.03	2 : 0.03	b : 0.03	h : 0.01	i : 0.01	
c : 0.18	] : 0.16	g : 0.12	e : 0.10	= : 0.09	2 : 0.07	d : 0.07	3 : 0.07	h : 0.03	f : 0.03	b : 0.01	i : 0.01	
c : 0.23	g : 0.18	e : 0.10	d : 0.10	= : 0.07	2 : 0.05	3 : 0.05	h : 0.03	f : 0.03	a : 0.03	] : 0.03	b : 0.01	i : 0.01	

#score	597.8086473383165
#seq	55
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_UTR_m1_run2.txt

#BEAR
ccccccgggggggooooooggggggggggg	chr7:44251952-44252222(+)$1	270	207	237	15.0216
=============oooooo===========	chr12:48362456-48362712(+)$1	256	56	86	16.4705
hhhhhagggggggooooooggggggg]a00	chrX:48126334-48126629(+)$1	295	126	156	13.1847
hhhh####eeeeeooooooeeeeehhhhhh	chr16:31202775-31202991(+)$1	216	178	208	11.8723
====="""bbrrrrrrrrrbb]========	chr1:28149574-28149840(+)$1	266	114	144	10.6160
!ccc"""a[ddddoooooodddd]a4444c	chr22:43193252-43193522(-)$1	270	169	199	13.8793
ggggggg"""cccooooooccc333ggggg	chr3:100084102-100084400(-)$1	298	123	153	15.9980
####ffffff[bboooooobb22ffffff3	chr8:11702411-11702667(-)$1	256	195	225	14.3446
dddd"""ffffffooooooffffff333dd	chr17:36478838-36479140(+)$1	302	261	291	13.1262
==========[bboooooobb22=======	chr1:26231061-26231313(-)$1	252	49	79	16.7372
FFggggggg[cccoooooocccgggggggC	chrX:65486898-65487199(+)$1	301	105	135	13.4689
ccc!!==========mmmm==========2	chr7:140156064-140156337(-)$1	273	31	61	11.4005
d[ggggggg!!bboooooobb]ggggggg]	chr17:38154029-38154295(+)$1	266	132	162	16.1508
!!eeeee[eeeeeooooooeeeeeeeeee2	chr1:182856614-182856844(+)$1	230	123	153	12.4671
feeeee[ffffffooooooffffff]eeee	chr16:56395701-56395960(-)$1	259	38	68	12.4771
fffff[dddd[bboooooobbdddd]ffff	chr21:46225820-46226086(-)$1	266	230	260	13.0122
!ccc[eeeee[bboooooobb]eeeeeccc	chr3:12623747-12624002(+)$1	255	61	91	14.8046
ff!!a[dddd[bboooooobb]dddd]a]f	chr6:27101140-27101413(+)$1	273	6	36	14.4297
ggg!!bb"""cccooooooccc333bb22g	chrX:25014093-25014367(+)$1	274	231	261	14.7040
:ddddccc[ddddoooooodddd]ccc333	chr6:166733453-166733774(-)$1	321	114	144	12.4688
b####dddd!!bboooooobb22ddddbb2	chr12:21788295-21788535(-)$1	240	80	110	13.9029
ggggggg!!ddddoooooodddd333gggg	chr11:20405061-20405359(+)$1	298	119	149	14.0907
ccbbbbccc[cccooooooccc]ccc]bb]	chr11:75115615-75115828(+)$1	213	61	91	14.2278
ddd[dddd!!cccooooooccc22dddd]d	chr9:91931431-91931689(+)$1	258	76	106	13.7998
cc[dddd!!bb[aooooooa]bbdddd]cc	chr14:102547675-102547891(-)$1	216	64	94	12.4308
ee[a[dddd[cccooooooccc]dddd]a]	chr2:65315154-65315423(-)$1	269	227	257	14.5668
c[===========oooooo===========	chr3:49145473-49145794(-)$1	321	213	243	16.5079
ccc[bb[ffffffooooooffffffbb]cc	chr7:75695699-75695982(+)$1	283	22	52	13.1378
[hhhhhhhh!!bboooooobbhhhhhhhhc	chr4:10076155-10076410(-)$1	255	59	89	12.9745
###ccc"""ddddooooooddddccc22ee	chr2:55199699-55200009(-)$1	310	119	149	13.3015
cc[ffffff[cccooooooccc]ffffffc	chr5:179263913-179264167(+)$1	254	124	154	14.3413
===========bboooooobb]========	chr1:3696713-3697015(-)$1	302	3	33	16.8643
cc$$$$$ffffffooooooffffffccc]b	chr2:114715120-114715375(+)$1	255	184	214	12.7818
ii============nnnnn===========	chr5:179135199-179135438(+)$1	239	174	204	12.1375
bbbccc[bb[cccooooooccc]bb]ccc3	chr2:232037262-232037546(+)$1	284	93	123	13.9791
d####eeeee[bboooooobbeeeee4444	chrX:118604924-118605165(+)$1	241	60	90	14.5414
!!ccc!!ffffffooooooffffffccc]e	chr5:145890861-145891109(+)$1	248	160	190	14.1405
"""eeeee!!cccooooooccc22eeeee3	chr1:28564429-28564701(+)$1	272	29	59	14.7255
!!hhhhhhhh[bboooooobb]hhhhhhhh	chr13:29252176-29252424(+)$1	248	31	61	13.0040
a"""gggggggcccnnnnnccc]ggggggg	chr4:100869412-100869660(-)$1	248	166	196	11.3976
ddddggggggga[annnnna]a]ggggggg	chr10:127541769-127542061(+)$1	292	158	188	10.1636
ccc!!eeeee[bboooooobb]eeeee333	chr16:85834722-85834984(+)$1	262	136	166	15.4344
c[a[a[gggggggooooooggggggga]a]	chr5:145562007-145562289(-)$1	282	22	52	15.4082
ccc[ccc"""cccooooooccc4444cccc	chr7:120628712-120629004(+)$1	292	30	60	15.6237
ccc[ccc[a!!bboooooobb22a22ccc2	chr1:174979108-174979361(+)$1	253	57	87	15.3257
bb[bb[ccc[cccooooooccc]ccc]bb]	chr16:70557640-70557932(+)$1	292	97	127	14.4235
eee[ccc"""cccoooooocccccceeeee	chr1:115292492-115292712(-)$1	220	5	35	14.5132
:ccc[ccc"""bboooooobb333cccccc	chrX:151899502-151899753(-)$1	251	60	90	15.1095
nnccc:ccc[cccooooooccc]cccdddd	chr4:83275065-83275309(-)$1	244	118	148	12.4741
=====!!ddddbboooooobb]dddd333=	chr10:43326500-43326738(+)$1	238	16	46	15.1532

#otherMatches

#Seq PSSM
GGCUCUUUUUCAGCUAACCCUGGGAAGGCU	chr7:44251952-44252222(+)$1	270	207	237	15.0216
GAAAGAAAAAAGUGUGUUGGCUUUUUUUUU	chr12:48362456-48362712(+)$1	256	56	86	16.4705
UGUUUCCAUUGUAUUUUCUUACAGUGUGCC	chrX:48126334-48126629(+)$1	295	126	156	13.1847
UCCUGGAAGAUCGAUGUCCCGAUCAGGAAG	chr16:31202775-31202991(+)$1	216	178	208	11.8723
uCACUUGUGGUUCUACAUUCCUGGUGAAUG	chr1:28149574-28149840(+)$1	266	114	144	10.6160
UAUCCUUGCUUUAUUUUCUUGGAACCUUUG	chr22:43193252-43193522(-)$1	270	169	199	13.8793
ACAUCUGUUUCAUGUCUAGGUGUUGUGGGU	chr3:100084102-100084400(-)$1	298	123	153	15.9980
CCCAGCCUGUGGUUACAGUGCAGACAGGCC	chr8:11702411-11702667(-)$1	256	195	225	14.3446
UAGCCUUUGAUUGUGUUCUUAAUUAUUAGC	chr17:36478838-36479140(+)$1	302	261	291	13.1262
GAAAGUGAUUGCAUGUUUUUGAAAAUCAUU	chr1:26231061-26231313(-)$1	252	49	79	16.7372
UUGGGAAUCCAAAUUGAAUUUUGAUUCUCC	chrX:65486898-65487199(+)$1	301	105	135	13.4689
GUAUUUCAGCUAGCUUCUAGGUUAGUUGGU	chr7:140156064-140156337(-)$1	273	31	61	11.4005
UUUUUGAAGCUUCGAUUAUGAUUUUUAAAC	chr17:38154029-38154295(+)$1	266	132	162	16.1508
UUUUGUUUAUAUUAUGUAAAAUAUAACGAU	chr1:182856614-182856844(+)$1	230	123	153	12.4671
UAAAGAAAUAAAAAAGAACUUUUGUAUCUU	chr16:56395701-56395960(-)$1	259	38	68	12.4771
UUGAAUUUAUGCAUUAGUCUGGUGAUUUCA	chr21:46225820-46226086(-)$1	266	230	260	13.0122
GGGUGUGCGGAGCUUCCCUGUACUGCAGCC	chr3:12623747-12624002(+)$1	255	61	91	14.8046
CAAAGUCACCAUCGCACAGGGCGGUGUCCU	chr6:27101140-27101413(+)$1	273	6	36	14.4297
CCCCAAGCUCCUGAAGACCCGGUUUCUGAG	chrX:25014093-25014367(+)$1	274	231	261	14.7040
AUGUUUGGUGAAGUUUGCUUUUCCCCAUAA	chr6:166733453-166733774(-)$1	321	114	144	12.4688
GAAAUUUAAAAACUACAAUGUGAUUAACUC	chr12:21788295-21788535(-)$1	240	80	110	13.9029
AGUUACAAAAGUGCUAAUUCACUACAUGUA	chr11:20405061-20405359(+)$1	298	119	149	14.0907
AGACCCCAGCUGUGUGCUAACAACUGUGGU	chr11:75115615-75115828(+)$1	213	61	91	14.2278
CUGUAAGAUGUUUAAGAUAAAAGUUCUUCC	chr9:91931431-91931689(+)$1	258	76	106	13.7998
UUCACAGAUUGGGGUAACGUGCACUGUAAG	chr14:102547675-102547891(-)$1	216	64	94	12.4308
UAUGUAAGAUCUGAUUUGCUAGUUCUUCCU	chr2:65315154-65315423(-)$1	269	227	257	14.5668
acauuauaauuuuauucuaaaaauuguaau	chr3:49145473-49145794(-)$1	321	213	243	16.5079
GAAGUGAGCCGCUGUGACGGGUGGCCAGUU	chr7:75695699-75695982(+)$1	283	22	52	13.1378
UGUCAGUGUUUACAAACUAGUGCGUUGACG	chr4:10076155-10076410(-)$1	255	59	89	12.9745
GAUGCAGAUUUUCUGAAAUGAAAUGUUUGU	chr2:55199699-55200009(-)$1	310	119	149	13.3015
GCUGGGGAGGCCAGUGUUGUGGGCUUCCUG	chr5:179263913-179264167(+)$1	254	124	154	14.3413
UUACGUGGCACUGUAcagucaugugccacg	chr1:3696713-3697015(-)$1	302	3	33	16.8643
AUAUUAAUGAAUUAUCCAAGAUUCGAUGGG	chr2:114715120-114715375(+)$1	255	184	214	12.7818
AUUGUUCAGUAAGUGAAAUGCUUGUUGGAU	chr5:179135199-179135438(+)$1	239	174	204	12.1375
ACUGACCUGAAGAACCCUGUCUCCAAGUCU	chr2:232037262-232037546(+)$1	284	93	123	13.9791
GCUUGUCUUGUAUGAUGAAAUCAAGAAGUA	chrX:118604924-118605165(+)$1	241	60	90	14.5414
AAUGUUCAGUUUAUGUAUUUGAACUACAAU	chr5:145890861-145891109(+)$1	248	160	190	14.1405
GAAGAUCAAAAUGCUAAAACAUGAUGAUUA	chr1:28564429-28564701(+)$1	272	29	59	14.7255
UGAUGGUGGAAUAUAAACUUGGUUUACUGU	chr13:29252176-29252424(+)$1	248	31	61	13.0040
GCAAGUUGGAAGUUUAAUUAGCUUUCCAAC	chr4:100869412-100869660(-)$1	248	166	196	11.3976
GAUUUUCUGAAGUCUCAGUGUCUUUCAGAG	chr10:127541769-127542061(+)$1	292	158	188	10.1636
CACCUCUGUGUGUGUACGAGCUCAUGGUAA	chr16:85834722-85834984(+)$1	262	136	166	15.4344
GGUGGUCUGGGAACUACAAUUCCCGGCGGG	chr5:145562007-145562289(-)$1	282	22	52	15.4082
GGGUGGCUGCGAUGCCGAGGUCCUCUGCUC	chr7:120628712-120629004(+)$1	292	30	60	15.6237
CCUGGGUGGAAUCAAGAGAGAAGCAAGCCA	chr1:174979108-174979361(+)$1	253	57	87	15.3257
AUGGCGGACGCCAGUAUGUUGGAGUUGGUG	chr16:70557640-70557932(+)$1	292	97	127	14.4235
CAACACUUGAUCUGAAACAAGAAGUUUGUG	chr1:115292492-115292712(-)$1	220	5	35	14.5132
UGGAUGACUUUGAGAUUUAUCUUUGUUUCC	chrX:151899502-151899753(-)$1	251	60	90	15.1095
GGGUCCCUCUGAAGUUUAAUUCUGAGUUCU	chr4:83275065-83275309(-)$1	244	118	148	12.4741
GAAGGGGGCUGAGGGCCAAUUGCAGUGAGC	chr10:43326500-43326738(+)$1	238	16	46	15.1532

#DB
))))))(((((((......)))))))((((	chr7:44251952-44252222(+)$1	1	207	237	15.0216
(((((((((((((......)))))))))))	chr12:48362456-48362712(+)$1	1	56	86	16.4705
(((((((((((((......))))))).)..	chrX:48126334-48126629(+)$1	1	126	156	13.1847
((((....(((((......)))))))))))	chr16:31202775-31202991(+)$1	1	178	208	11.8723
(((((...((.........)).))))))))	chr1:28149574-28149840(+)$1	1	114	144	10.6160
.(((...(.((((......)))).)....)	chr22:43193252-43193522(-)$1	1	169	199	13.8793
(((((((...(((......)))...)))))	chr3:100084102-100084400(-)$1	1	123	153	15.9980
....((((((.((......))..)))))).	chr8:11702411-11702667(-)$1	1	195	225	14.3446
((((...((((((......))))))...))	chr17:36478838-36479140(+)$1	1	261	291	13.1262
((((((((((.((......))..)))))))	chr1:26231061-26231313(-)$1	1	49	79	16.7372
(((((((((.(((......))))))))))(	chrX:65486898-65487199(+)$1	1	105	135	13.4689
(((..((((((((((....)))))))))).	chr7:140156064-140156337(-)$1	1	31	61	11.4005
(.(((((((..((......)).))))))).	chr17:38154029-38154295(+)$1	1	132	162	16.1508
..(((((.(((((......)))))))))).	chr1:182856614-182856844(+)$1	1	123	153	12.4671
)(((((.((((((......)))))).))))	chr16:56395701-56395960(-)$1	1	38	68	12.4771
(((((.((((.((......)))))).))))	chr21:46225820-46226086(-)$1	1	230	260	13.0122
.(((.(((((.((......)).))))))))	chr3:12623747-12624002(+)$1	1	61	91	14.8046
((..(.((((.((......)).)))).).)	chr6:27101140-27101413(+)$1	1	6	36	14.4297
(((..((...(((......)))...))..)	chrX:25014093-25014367(+)$1	1	231	261	14.7040
.(((((((.((((......)))).)))...	chr6:166733453-166733774(-)$1	1	114	144	12.4688
(....((((..((......))..)))))).	chr12:21788295-21788535(-)$1	1	80	110	13.9029
(((((((..((((......))))...))))	chr11:20405061-20405359(+)$1	1	119	149	14.0907
(((((((((.(((......))).))).)).	chr11:75115615-75115828(+)$1	1	61	91	14.2278
(((.((((..(((......)))..)))).)	chr9:91931431-91931689(+)$1	1	76	106	13.7998
((.((((..((.(......).)))))).))	chr14:102547675-102547891(-)$1	1	64	94	12.4308
((.(.((((.(((......))).)))).).	chr2:65315154-65315423(-)$1	1	227	257	14.5668
(.(((((((((((......)))))))))))	chr3:49145473-49145794(-)$1	1	213	243	16.5079
(((.((.((((((......)))))))).))	chr7:75695699-75695982(+)$1	1	22	52	13.1378
.((((((((..((......)))))))))))	chr4:10076155-10076410(-)$1	1	59	89	12.9745
...(((...((((......)))))))..))	chr2:55199699-55200009(-)$1	1	119	149	13.3015
((.((((((.(((......))).)))))))	chr5:179263913-179264167(+)$1	1	124	154	14.3413
(((((((((((((......)).))))))))	chr1:3696713-3697015(-)$1	1	3	33	16.8643
((.....((((((......))))))))).)	chr2:114715120-114715375(+)$1	1	184	214	12.7818
))((((((((((((.....)))))))))))	chr5:179135199-179135438(+)$1	1	174	204	12.1375
((((((.((.(((......))).)).))).	chr2:232037262-232037546(+)$1	1	93	123	13.9791
(....(((((.((......)))))))....	chrX:118604924-118605165(+)$1	1	60	90	14.5414
..(((..((((((......))))))))).)	chr5:145890861-145891109(+)$1	1	160	190	14.1405
...(((((..(((......)))..))))).	chr1:28564429-28564701(+)$1	1	29	59	14.7255
..((((((((.((......)).))))))))	chr13:29252176-29252424(+)$1	1	31	61	13.0040
(...((((((((((.....))).)))))))	chr4:100869412-100869660(-)$1	1	166	196	11.3976
))))((((((((.(.....).).)))))))	chr10:127541769-127542061(+)$1	1	158	188	10.1636
(((..(((((.((......)).)))))...	chr16:85834722-85834984(+)$1	1	136	166	15.4344
(.(.(.(((((((......)))))))).).	chr5:145562007-145562289(-)$1	1	22	52	15.4082
(((.(((...(((......)))....))))	chr7:120628712-120629004(+)$1	1	30	60	15.6237
(((.(((.(..((......))..)..))).	chr1:174979108-174979361(+)$1	1	57	87	15.3257
((.((.(((.(((......))).))).)).	chr16:70557640-70557932(+)$1	1	97	127	14.4235
(((.(((...(((......)))))))))))	chr1:115292492-115292712(-)$1	1	5	35	14.5132
.(((.(((...((......))...))))))	chrX:151899502-151899753(-)$1	1	60	90	15.1095
..))).(((.(((......))).)))((((	chr4:83275065-83275309(-)$1	1	118	148	12.4741
(((((..((((((......)).))))...)	chr10:43326500-43326738(+)$1	1	16	46	15.1532

#PSSM
c : 0.23	= : 0.10	! : 0.10	d : 0.10	g : 0.06	f : 0.06	b : 0.06	h : 0.04	# : 0.04	: : 0.04	e : 0.04	F : 0.02	[ : 0.02	i : 0.02	" : 0.02	a : 0.02	n : 0.02	
c : 0.25	= : 0.10	# : 0.08	d : 0.08	h : 0.06	g : 0.06	[ : 0.06	! : 0.06	e : 0.06	f : 0.04	b : 0.04	" : 0.04	F : 0.02	i : 0.02	n : 0.02	
c : 0.21	= : 0.14	g : 0.10	h : 0.08	# : 0.08	d : 0.08	[ : 0.08	e : 0.06	b : 0.04	" : 0.04	f : 0.02	! : 0.02	$ : 0.02	a : 0.02	
c : 0.16	= : 0.14	[ : 0.12	h : 0.08	g : 0.08	d : 0.08	! : 0.08	# : 0.06	e : 0.06	f : 0.04	b : 0.04	a : 0.02	$ : 0.02	" : 0.02	
c : 0.16	= : 0.14	g : 0.12	h : 0.06	# : 0.06	f : 0.06	! : 0.06	e : 0.06	[ : 0.06	d : 0.06	b : 0.06	" : 0.04	a : 0.04	$ : 0.02	
c : 0.16	= : 0.12	g : 0.12	e : 0.12	[ : 0.08	d : 0.08	" : 0.06	b : 0.06	f : 0.04	h : 0.04	! : 0.04	a : 0.02	# : 0.02	$ : 0.02	: : 0.02	
g : 0.18	c : 0.16	= : 0.12	d : 0.12	e : 0.10	" : 0.08	[ : 0.06	f : 0.04	h : 0.04	! : 0.04	# : 0.02	b : 0.02	$ : 0.02	
g : 0.14	f : 0.14	= : 0.12	" : 0.12	d : 0.12	c : 0.10	e : 0.08	[ : 0.04	! : 0.04	h : 0.04	# : 0.02	a : 0.02	b : 0.02	
g : 0.14	f : 0.14	= : 0.12	" : 0.12	e : 0.10	d : 0.10	! : 0.08	c : 0.06	b : 0.04	[ : 0.04	h : 0.04	a : 0.02	
d : 0.14	[ : 0.14	= : 0.12	f : 0.12	! : 0.12	g : 0.10	e : 0.10	" : 0.10	b : 0.04	h : 0.02	
c : 0.25	[ : 0.16	g : 0.10	= : 0.10	d : 0.10	f : 0.10	! : 0.08	e : 0.04	r : 0.02	b : 0.02	" : 0.02	
b : 0.30	c : 0.27	f : 0.10	= : 0.08	d : 0.08	g : 0.06	e : 0.04	r : 0.02	[ : 0.02	a : 0.02	
b : 0.30	c : 0.27	f : 0.10	= : 0.08	d : 0.08	g : 0.06	e : 0.04	r : 0.02	a : 0.02	[ : 0.02	
o : 0.90	= : 0.04	r : 0.02	c : 0.02	a : 0.02	
o : 0.90	n : 0.06	r : 0.02	= : 0.02	
o : 0.90	n : 0.06	r : 0.02	m : 0.02	
o : 0.90	n : 0.06	r : 0.02	m : 0.02	
o : 0.90	n : 0.06	r : 0.02	m : 0.02	
o : 0.90	n : 0.06	r : 0.02	m : 0.02	
b : 0.32	c : 0.27	f : 0.10	= : 0.08	d : 0.08	g : 0.06	e : 0.04	a : 0.04	
b : 0.32	c : 0.27	f : 0.10	= : 0.08	d : 0.08	g : 0.06	e : 0.04	] : 0.04	
c : 0.27	] : 0.16	d : 0.10	f : 0.10	= : 0.08	2 : 0.08	g : 0.06	e : 0.06	b : 0.02	h : 0.02	a : 0.02	3 : 0.02	
] : 0.16	d : 0.14	= : 0.12	2 : 0.12	g : 0.10	e : 0.10	f : 0.10	3 : 0.06	h : 0.04	b : 0.02	4 : 0.02	c : 0.02	
g : 0.14	= : 0.14	f : 0.14	d : 0.12	e : 0.10	c : 0.10	3 : 0.08	] : 0.04	2 : 0.04	h : 0.04	b : 0.02	4 : 0.02	a : 0.02	
g : 0.14	= : 0.14	f : 0.14	d : 0.14	c : 0.14	e : 0.10	h : 0.06	3 : 0.06	a : 0.02	b : 0.02	4 : 0.02	2 : 0.02	
g : 0.16	c : 0.16	= : 0.14	e : 0.12	d : 0.12	h : 0.06	] : 0.06	4 : 0.04	f : 0.04	3 : 0.04	b : 0.04	2 : 0.02	
g : 0.14	= : 0.14	c : 0.14	e : 0.12	d : 0.10	] : 0.08	h : 0.06	f : 0.06	4 : 0.04	3 : 0.04	b : 0.04	2 : 0.02	a : 0.02	
g : 0.14	= : 0.14	c : 0.14	3 : 0.08	e : 0.08	] : 0.08	h : 0.06	f : 0.06	b : 0.06	a : 0.04	4 : 0.04	2 : 0.04	d : 0.04	
g : 0.14	= : 0.14	c : 0.14	e : 0.10	] : 0.08	h : 0.06	f : 0.06	3 : 0.06	b : 0.06	4 : 0.04	d : 0.04	a : 0.04	0 : 0.02	2 : 0.02	
c : 0.16	= : 0.14	g : 0.12	3 : 0.10	] : 0.10	2 : 0.08	e : 0.08	d : 0.06	h : 0.04	f : 0.04	0 : 0.02	C : 0.02	b : 0.02	4 : 0.02	

#score	697.1192089565039
#seq	50
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_CDS_m3_run2.txt

#BEAR
$$$$$dddd"""bb[ddddllldddd]bb4444dddd555	chr6:166737956-166738184(-)$1	228	37	77	14.0652
eeee####dddd####cccmmmmccc333dddd55555ee	chr6:122779583-122779835(-)$1	252	128	168	15.3674
dd[ffffff"""bb!!cccmmmmccc22bb7777777fff	chr2:177202259-177202655(+)$1	396	2	42	13.8545
=========!!bb[eeeeellleeeee22bb22=======	chr1:186282897-186283214(-)$1	317	42	82	11.7917
ddd[dddddddd[ccc[ccclllccc]ccc]dddd4444d	chr2:88422456-88422677(-)$1	221	44	84	14.1418
eeeee!!dddd####ddddllldddd4444dddd]eeeee	chr4:120221390-120221606(-)$1	216	11	51	13.0418
iii%%%%%%ccc"""cccmmmmccc333ccc000000000	chr6:166739519-166739756(-)$1	237	149	189	15.5575
ccc!!dddd!!hhhhhhhhmmmmhhhhhhhh]dddd22cc	chr2:32530569-32530825(+)$1	256	96	136	11.5192
ff"""dddd!!hhhhhhhhlllhhhhhhhh]dddd4444f	chr6:24650832-24651120(-)$1	288	241	281	14.3335
===%%%%%%dddd[ddddmmmmdddddddd666666====	chr14:39868454-39868833(-)$1	379	60	100	12.6604
Bcccbb"""a[cccddddmmmmdddd22ccc]a4444bb]	chr2:20234055-20234261(-)$1	206	160	200	14.4909

#otherMatches

#Seq PSSM
UUGAUUGAGAAAGAUGUUUUUAAAACUUUGAAACUCAUAA	chr6:166737956-166738184(-)$1	228	37	77	14.0652
UUGUGUAAUGUUGAUACCAGGAAUGGAAGAACAACUGAAU	chr6:122779583-122779835(-)$1	252	128	168	15.3674
CCAUUCUUACCACACAAUUGACAAAUGAUGAACUUUCUGA	chr2:177202259-177202655(+)$1	396	2	42	13.8545
UUUUUCUUUUACAGGUGUGAGCCAUGCAAUGGGAGGGAGA	chr1:186282897-186283214(-)$1	317	42	82	11.7917
UGGCUUUCAGACCAUGACAUUGGGUGACAUUGUCUUCAAG	chr2:88422456-88422677(-)$1	221	44	84	14.1418
UCAGUCUGGGGCAAAUGGGCUUCCCAAACACUCCUACUGG	chr4:120221390-120221606(-)$1	216	11	51	13.0418
AGCCCUACUGGCUUUCAGUUAACUGUGUGCCCCCCACCCC	chr6:166739519-166739756(-)$1	237	149	189	15.5575
UAUUUUUUGUCGUUAUAUACUGGUGUGUGAUCCAAGUUAU	chr2:32530569-32530825(+)$1	256	96	136	11.5192
UUUCAGAAUUCAACAUUAAAGAUUAAUGUUUAUUUAAACG	chr6:24650832-24651120(-)$1	288	241	281	14.3335
GAACCAAAUCGUCAUUUUUACAGAGAGAUGCAAAGCUUCA	chr14:39868454-39868833(-)$1	379	60	100	12.6604
CCUGCCUUUGAAGCACCUCCUCAGGUUAGCUACUGUUGGA	chr2:20234055-20234261(-)$1	206	160	200	14.4909

#DB
.....((((...((.((((...)))).))....))))...	chr6:166737956-166738184(-)$1	1	37	77	14.0652
((((....((((....(((....)))...)))).....))	chr6:122779583-122779835(-)$1	1	128	168	15.3674
((.((((((...((..(((....)))..)).......)))	chr2:177202259-177202655(+)$1	1	2	42	13.8545
(((((((((..((.(((((...)))))..))..)))))))	chr1:186282897-186283214(-)$1	1	42	82	11.7917
(((.((((((((.(((.(((...))).))).))))....)	chr2:88422456-88422677(-)$1	1	44	84	14.1418
(((((..((((....((((...))))....)))).)))))	chr4:120221390-120221606(-)$1	1	11	51	13.0418
(((......(((...(((....)))...))).........	chr6:166739519-166739756(-)$1	1	149	189	15.5575
(((..((((..((((((((....)))))))).))))..))	chr2:32530569-32530825(+)$1	1	96	136	11.5192
((...((((..((((((((...)))))))).))))....)	chr6:24650832-24651120(-)$1	1	241	281	14.3335
(((......((((.((((....))))))))......))))	chr14:39868454-39868833(-)$1	1	60	100	12.6604
)(((((...(.(((((((....))))..))).)....)).	chr2:20234055-20234261(-)$1	1	160	200	14.4909

#PSSM
e : 0.18	d : 0.18	= : 0.18	$ : 0.09	i : 0.09	c : 0.09	f : 0.09	B : 0.09	
e : 0.18	d : 0.18	= : 0.18	c : 0.18	$ : 0.09	i : 0.09	f : 0.09	
e : 0.18	= : 0.18	c : 0.18	$ : 0.09	[ : 0.09	d : 0.09	i : 0.09	" : 0.09	
e : 0.18	% : 0.18	$ : 0.09	f : 0.09	= : 0.09	[ : 0.09	! : 0.09	" : 0.09	c : 0.09	
% : 0.18	$ : 0.09	# : 0.09	f : 0.09	= : 0.09	d : 0.09	e : 0.09	! : 0.09	" : 0.09	b : 0.09	
d : 0.36	% : 0.18	# : 0.09	f : 0.09	= : 0.09	! : 0.09	b : 0.09	
d : 0.36	% : 0.18	# : 0.09	f : 0.09	= : 0.09	! : 0.09	" : 0.09	
d : 0.45	% : 0.18	# : 0.09	f : 0.09	= : 0.09	" : 0.09	
d : 0.54	% : 0.18	f : 0.09	= : 0.09	" : 0.09	
d : 0.36	! : 0.27	" : 0.18	c : 0.09	a : 0.09	
d : 0.36	! : 0.27	" : 0.18	c : 0.09	[ : 0.09	
d : 0.27	" : 0.18	c : 0.18	h : 0.18	b : 0.09	# : 0.09	
b : 0.27	# : 0.18	h : 0.18	[ : 0.09	" : 0.09	d : 0.09	c : 0.09	
b : 0.18	# : 0.18	[ : 0.18	c : 0.18	h : 0.18	" : 0.09	
# : 0.18	h : 0.18	d : 0.18	[ : 0.09	! : 0.09	e : 0.09	c : 0.09	" : 0.09	
d : 0.36	c : 0.18	h : 0.18	# : 0.09	! : 0.09	e : 0.09	
d : 0.36	c : 0.27	h : 0.18	e : 0.09	[ : 0.09	
d : 0.36	c : 0.36	h : 0.18	e : 0.09	
c : 0.27	m : 0.27	d : 0.18	h : 0.18	e : 0.09	
m : 0.54	l : 0.36	c : 0.09	
m : 0.54	l : 0.45	
m : 0.54	l : 0.45	
d : 0.36	m : 0.27	e : 0.09	l : 0.09	c : 0.09	h : 0.09	
d : 0.36	c : 0.36	h : 0.18	e : 0.09	
d : 0.36	c : 0.36	h : 0.18	e : 0.09	
d : 0.36	c : 0.27	h : 0.18	e : 0.09	3 : 0.09	
] : 0.18	3 : 0.18	2 : 0.18	h : 0.18	e : 0.09	4 : 0.09	d : 0.09	
2 : 0.27	3 : 0.18	h : 0.18	b : 0.09	c : 0.09	4 : 0.09	d : 0.09	
c : 0.27	b : 0.18	h : 0.18	3 : 0.09	2 : 0.09	4 : 0.09	d : 0.09	
c : 0.27	4 : 0.18	d : 0.18	b : 0.18	h : 0.18	
d : 0.18	] : 0.18	c : 0.18	4 : 0.09	7 : 0.09	b : 0.09	h : 0.09	6 : 0.09	
d : 0.36	] : 0.18	4 : 0.09	7 : 0.09	2 : 0.09	0 : 0.09	6 : 0.09	
d : 0.45	4 : 0.09	7 : 0.09	2 : 0.09	0 : 0.09	6 : 0.09	a : 0.09	
d : 0.45	5 : 0.09	7 : 0.09	= : 0.09	0 : 0.09	6 : 0.09	4 : 0.09	
d : 0.36	5 : 0.09	7 : 0.09	= : 0.09	] : 0.09	0 : 0.09	6 : 0.09	4 : 0.09	
4 : 0.27	d : 0.18	5 : 0.09	7 : 0.09	= : 0.09	e : 0.09	0 : 0.09	6 : 0.09	
4 : 0.27	= : 0.18	d : 0.09	5 : 0.09	7 : 0.09	e : 0.09	0 : 0.09	2 : 0.09	
5 : 0.18	= : 0.18	4 : 0.18	f : 0.09	e : 0.09	0 : 0.09	2 : 0.09	b : 0.09	
e : 0.18	= : 0.18	4 : 0.18	5 : 0.09	f : 0.09	0 : 0.09	c : 0.09	b : 0.09	
e : 0.18	f : 0.18	= : 0.18	5 : 0.09	d : 0.09	0 : 0.09	c : 0.09	] : 0.09	

#score	150.82441771259087
#seq	11
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF510KUY_SUB1_transcript_m3_run2.txt

#BEAR
gggggggqqqqqqqqggggggge	chr16:56448104-56448354(-)$1	250	89	112	16.2409
fff[cccqqqqqqqqccc]ffff	chr22:41924709-41925027(+)$1	318	268	291	15.9317
gg!!cccqqqqqqqqcccggggg	chr19:46112698-46112950(-)$1	252	155	178	16.2319
:ffffffqqqqqqqqffffffee	chr2:62105905-62106133(-)$1	228	4	27	15.0286
ggggcccqqqqqqqqccc:eeee	chr1:8044976-8045236(+)$1	260	76	99	14.7320
a[eeeeeqqqqqqqqeeeeea]b	chr7:117831996-117832282(+)$1	286	96	119	14.5369
[bb[cccqqqqqqqqcccbb]bb	chrX:135955905-135956130(-)$1	225	23	46	14.6198
iiiiiiiqqqqqqqqiiiiiiii	chrX:141290316-141290593(-)$1	277	233	256	15.6637
gggggggqqqqqqqqgggggggi	chr6:30692204-30692423(+)$1	219	106	129	16.2797
"dddd[aqqqqqqqqa]ddddee	chr12:131357345-131357565(+)$1	220	117	140	13.7247
Gffffffqqqqqqqqffffff::	chr3:128888925-128889219(-)$1	294	271	294	14.1950
[bb[cccqqqqqqqqccc]bb]d	chr4:39457925-39458163(-)$1	238	162	185	15.3458
gggggggqqqqqqqqggggggg]	chr22:31795500-31795774(+)$1	274	55	78	16.4167
#ffffffqqqqqqqqffffff33	chr8:27402194-27402458(+)$1	264	203	226	16.4546
fff[cccqqqqqqqqccc]ffff	chr4:151185743-151186022(-)$1	279	84	107	15.9317
$$eeeeeqqqqqqqqeeeee]ii	chr7:56130941-56131183(+)$1	242	49	72	14.3314
gggggggqqqqqqqqggggggg:	chr3:128888868-128889125(-)$1	257	177	200	15.6989
"""ddddqqqqqqqqdddd4444	chr16:85838483-85838742(+)$1	259	150	173	13.8650
gggggggqqqqqqqqggggggg]	chr1:228645371-228645654(-)$1	283	198	221	16.4167
####cccqqqqqqqqccc333ee	chr12:104341530-104341755(+)$1	225	140	163	15.6015
gggggggqqqqqqqqggggggg:	chr9:138824770-138825030(-)$1	260	232	255	15.6989
[bb!!bbqqqqqqqqbb22bb]h	chr3:101399873-101400125(-)$1	252	28	51	13.3689
gg[a[bbqqqqqqqqbba]gggg	chr12:51453202-51453474(+)$1	272	42	65	14.9172
ddd[cccqqqqqqqqccc]dddd	chrX:118378231-118378511(+)$1	280	69	92	14.7105
gggg[bbqqqqqqqqbb333ggg	chr6:44221397-44221619(+)$1	222	173	196	15.0919
=======qqqqqqqq========	chr8:109228540-109228749(-)$1	209	160	183	15.9870
gggggggqqqqqqqqggggggg:	chr1:93301799-93302050(+)$1	251	71	94	15.6989
d[eeeeeqqqqqqqqeeeee333	chr3:50367780-50368053(-)$1	273	154	177	14.8564
:ffffffqqqqqqqqffffff:=	chr3:148748031-148748276(-)$1	245	139	162	14.3396
""eeeeeqqqqqqqqeeeeeeee	chr1:167511355-167511605(-)$1	250	147	170	14.4993
[ccccccqqqqqqqqccc333cc	chr1:23409947-23410241(+)$1	294	245	268	15.8717
gffffffqqqqqqqqffffffee	chr17:38544976-38545219(-)$1	243	43	66	15.9199
[ffffffqqqqqqqqffffff]a	chr10:74127308-74127558(-)$1	250	42	65	16.3674
:ffffffqqqqqqqqffffff::	chr11:125447297-125447566(+)$1	269	123	146	13.7327
:ffffffqqqqqqqqffffff:E	chr11:32605292-32605556(+)$1	264	231	254	13.5479
eeeee[aqqqqqqqqa]eeeee:	chr16:31202695-31202916(+)$1	221	198	221	13.9061
iiiiiiiqqqqqqqqiiiiiiii	chr12:54856920-54857178(-)$1	258	175	198	15.6637
[bb[cccqqqqqqqqccc]bb]e	chr11:47186782-47187041(-)$1	259	169	192	15.4073
ggggg[aqqqqqqqqa]gggggg	chr8:98864214-98864471(+)$1	257	95	118	16.0104
gggggggqqqqqqqqggggggg2	chr2:62099492-62099712(-)$1	220	129	152	16.2778
gg[bb[aqqqqqqqqa]bbgggg	chrX:64732476-64732743(-)$1	267	56	79	14.3896
cc!!cccqqqqqqqqccc22ccc	chr1:156278747-156279010(-)$1	263	34	57	15.4135
eeeecccqqqqqqqqccc]eeee	chr3:13358583-13358843(-)$1	260	217	240	15.2469
"""ddddqqqqqqqqdddd333c	chr15:69745952-69746160(+)$1	208	155	178	14.1572
d[eeeeeqqqqqqqqeeeee]dd	chr15:40328175-40328408(-)$1	233	201	224	14.2334
bffffffqqqqqqqqffffff44	chr16:2821120-2821388(+)$1	268	37	60	15.8917
[bb[cccqqqqqqqqccc]bb33	chr5:140894682-140894922(-)$1	240	35	58	15.6839
gggggggqqqqqqqqggggggg2	chrX:154007162-154007413(-)$1	251	99	122	16.2778
%ffffffqqqqqqqqffffff44	chr6:133138518-133138722(+)$1	204	141	164	15.6546
ggggg[aqqqqqqqqa]gggggg	chr8:98864165-98864396(+)$1	231	144	167	16.0104
ccc!!bbqqqqqqqqbb22ccc2	chr7:75695699-75695982(+)$1	283	255	278	13.9749
[ffffffqqqqqqqqffffff44	chr17:34050634-34050938(+)$1	304	216	239	16.3272
[ffffffqqqqqqqqffffff33	chr9:100777842-100778078(+)$1	236	47	70	16.5327
gggggggqqqqqqqqggggggg:	chr12:53435497-53435782(+)$1	285	256	279	15.6989
bb!!cccqqqqqqqqccc]bb66	chr6:26285552-26285800(-)$1	248	76	99	14.4597
fffffbbqqqqqqqqbb]fffff	chr8:99114555-99114807(-)$1	252	24	47	14.5015
:ffffffqqqqqqqqffffff:E	chr9:75784895-75785266(+)$1	371	188	211	13.5479
:ffffffqqqqqqqqffffff::	chrX:135594256-135594519(+)$1	263	209	232	13.7327
!ffffffqqqqqqqqffffff22	chr7:139102448-139102692(+)$1	244	33	56	16.0698
ddddcccqqqqqqqqccc22ddd	chr14:23389903-23390160(-)$1	257	155	178	14.1314
eeeddddqqqqqqqqdddd]eee	chr6:485127-485389(-)$1	262	236	259	13.3843
gggggggqqqqqqqqggggggg:	chr14:103985905-103986160(-)$1	255	215	238	15.6989
gggggggqqqqqqqqggggggg:	chr14:73586528-73586809(+)$1	281	84	107	15.6989
c[eeeeeqqqqqqqqeeeee]cc	chr12:57031870-57032112(-)$1	242	205	228	14.6503
ddd[cccqqqqqqqqccc22ddd	chr3:141644591-141644847(+)$1	256	73	96	14.4968

#otherMatches

#Seq PSSM
UGUUUACAGGUUCUAGUAAAUAC	chr16:56448104-56448354(-)$1	250	89	112	16.2409
AGUGACUGUUCUGUGAGUGAUUG	chr22:41924709-41925027(+)$1	318	268	291	15.9317
GACUGACAUACAGAAGUCUCUAU	chr19:46112698-46112950(-)$1	252	155	178	16.2319
AUUUCUGAGUCAUUCCAGAAGGC	chr2:62105905-62106133(-)$1	228	4	27	15.0286
AAGCCCUGAAUGGCAAGGAGGUG	chr1:8044976-8045236(+)$1	260	76	99	14.7320
UACAGAAACUGAUUAUUCUGAGG	chr7:117831996-117832282(+)$1	286	96	119	14.5369
CGCAUUGCUUUUCAACAAGCAAA	chrX:135955905-135956130(-)$1	225	23	46	14.6198
AUUUUGUGAUCUGUAACAGGGUA	chrX:141290316-141290593(-)$1	277	233	256	15.6637
gugccuggcacauaguaggcgcu	chr6:30692204-30692423(+)$1	219	106	129	16.2797
UAGGUAUGUGCUGGAAAACCUUG	chr12:131357345-131357565(+)$1	220	117	140	13.7247
UGGAAGUGUCUAUGAACUUCCAU	chr3:128888925-128889219(-)$1	294	271	294	14.1950
UUAAGAAAUUUUUCCUUCAUAUU	chr4:39457925-39458163(-)$1	238	162	185	15.3458
CGCGGUAAUUCGAAGUACCGCGC	chr22:31795500-31795774(+)$1	274	55	78	16.4167
GAUUGGGAUGCCUUACUCAAUAA	chr8:27402194-27402458(+)$1	264	203	226	16.4546
AAGAAACGAAACAAUGUUAUUUG	chr4:151185743-151186022(-)$1	279	84	107	15.9317
UUUAUCCAGUGAACAGGAUGUUU	chr7:56130941-56131183(+)$1	242	49	72	14.3314
UGGAAGUGUCUAUGAACUUCCAU	chr3:128888868-128889125(-)$1	257	177	200	15.6989
GUCUGCCAGCCAGAAGGCAUUGA	chr16:85838483-85838742(+)$1	259	150	173	13.8650
CGCGGGGCUGCAGUUCCCCGUGG	chr1:228645371-228645654(-)$1	283	198	221	16.4167
GUCAUGUGUAUAAAAAUAAAAAA	chr12:104341530-104341755(+)$1	225	140	163	15.6015
UUUCUUGGUGCCGCACAAGAAAC	chr9:138824770-138825030(-)$1	260	232	255	15.6989
AAAGUUUUGUGGAGUAAUAUUGU	chr3:101399873-101400125(-)$1	252	28	51	13.3689
CAGUCGUAUAGUAUAGCAGUGCA	chr12:51453202-51453474(+)$1	272	42	65	14.9172
AUUUCAAACUUGUAAUUGUGGUU	chrX:118378231-118378511(+)$1	280	69	92	14.7105
UUGUUCUGAAAUUAAAGUAUGCA	chr6:44221397-44221619(+)$1	222	173	196	15.0919
AUUGUAACGUUAAUCUUGCAGUG	chr8:109228540-109228749(-)$1	209	160	183	15.9870
UUGCCAGAACUACCACUGGCAAU	chr1:93301799-93302050(+)$1	251	71	94	15.6989
UGCUGGGGGAAUGAGCCCAGAGA	chr3:50367780-50368053(-)$1	273	154	177	14.8564
aaaguuuaauuuaaaaaauuuaa	chr3:148748031-148748276(-)$1	245	139	162	14.3396
UCUCUGGAAAGCGUCCCAGAAUA	chr1:167511355-167511605(-)$1	250	147	170	14.4993
UUGUUCCUUUGAGUUGGAGUUAC	chr1:23409947-23410241(+)$1	294	245	268	15.8717
CUGUGUCUAUAACUUGACACAGU	chr17:38544976-38545219(-)$1	243	43	66	15.9199
GGCAGGCAGAAAGAAGUCUGUGA	chr10:74127308-74127558(-)$1	250	42	65	16.3674
CGAGUAUUUAUUCCUGUGCUUCA	chr11:125447297-125447566(+)$1	269	123	146	13.7327
AGUAGCGCAAGGGACCGCUGCCG	chr11:32605292-32605556(+)$1	264	231	254	13.5479
UGGUUCCCAUUAAAAGUGACCAU	chr16:31202695-31202916(+)$1	221	198	221	13.9061
CAUCAUAUCUCAAGCUGUGAUGA	chr12:54856920-54857178(-)$1	258	175	198	15.6637
GAAUGGUCAGUACCAGCCCUUGU	chr11:47186782-47187041(-)$1	259	169	192	15.4073
GCAGUGACCAUCUGCUGACUGUU	chr8:98864214-98864471(+)$1	257	95	118	16.0104
GUGUUACAUUAUUAAGUAACAUU	chr2:62099492-62099712(-)$1	220	129	152	16.2778
CAUGGGCUCAAAACUGGCCUGCA	chrX:64732476-64732743(-)$1	267	56	79	14.3896
CUACUUCAAUGCACAGAACCAGC	chr1:156278747-156279010(-)$1	263	34	57	15.4135
CCUCAGGAACCAGCACCUGGAGG	chr3:13358583-13358843(-)$1	260	217	240	15.2469
GAGGGCAGUUGUACAUGCUAAAG	chr15:69745952-69746160(+)$1	208	155	178	14.1572
AAUAGUUCUGGCAAUAACUACUA	chr15:40328175-40328408(-)$1	233	201	224	14.2334
AGGGCCAGGGAGGCAUGGCCCCA	chr16:2821120-2821388(+)$1	268	37	60	15.8917
GGCGCUUGUGUAUAAAGGGGCAA	chr5:140894682-140894922(-)$1	240	35	58	15.6839
AGUAAGGUUCAGUCUUCUUGCUC	chrX:154007162-154007413(-)$1	251	99	122	16.2778
GUAUUUCAAAUGCAAGAAAUGAA	chr6:133138518-133138722(+)$1	204	141	164	15.6546
GCAGUGACCAUCUGCUGACUGUU	chr8:98864165-98864396(+)$1	231	144	167	16.0104
AGCCAACUUUAGAGUGUCUGCUA	chr7:75695699-75695982(+)$1	283	255	278	13.9749
CUGUGCUAACAUUAGGGCACAAC	chr17:34050634-34050938(+)$1	304	216	239	16.3272
UCUUGGUAAUCUACCACCAAGCU	chr9:100777842-100778078(+)$1	236	47	70	16.5327
AAUAGUUAUAUCCAAAACUGUUU	chr12:53435497-53435782(+)$1	285	256	279	15.6989
UCUGGCCGUGGUAAAGGUGGAAA	chr6:26285552-26285800(-)$1	248	76	99	14.4597
AGGAAAGAAGAGUUACUAUUCCU	chr8:99114555-99114807(-)$1	252	24	47	14.5015
UAAGCUUAAAUAGGAAAGUUUCU	chr9:75784895-75785266(+)$1	371	188	211	13.5479
CAUCAAUAAAAAUGAGUUGAUAA	chrX:135594256-135594519(+)$1	263	209	232	13.7327
AUGUGUCAAUCAGAGGAUAUGGA	chr7:139102448-139102692(+)$1	244	33	56	16.0698
AGGAGCAUUUCAAUCUGCUUUCC	chr14:23389903-23390160(-)$1	257	155	178	14.1314
UGUAAGUUGUAAUUUACUUGACA	chr6:485127-485389(-)$1	262	236	259	13.3843
CCCAGGAGUCUUGAGUCCUGGGC	chr14:103985905-103986160(-)$1	255	215	238	15.6989
AUUUUUUUUUUUUGUAGAAAAUG	chr14:73586528-73586809(+)$1	281	84	107	15.6989
UAUUUAAuuuuaguuuuagagac	chr12:57031870-57032112(-)$1	242	205	228	14.6503
GGGUUACAUCAUAACGUGCUUCC	chr3:141644591-141644847(+)$1	256	73	96	14.4968

#DB
(((((((........)))))))(	chr16:56448104-56448354(-)$1	1	89	112	16.2409
(((.(((........))).))))	chr22:41924709-41925027(+)$1	1	268	291	15.9317
((..(((........))))))))	chr19:46112698-46112950(-)$1	1	155	178	16.2319
.((((((........))))))((	chr2:62105905-62106133(-)$1	1	4	27	15.0286
))))(((........))).((((	chr1:8044976-8045236(+)$1	1	76	99	14.7320
(.(((((........)))))).)	chr7:117831996-117832282(+)$1	1	96	119	14.5369
.((.(((........))))).))	chrX:135955905-135956130(-)$1	1	23	46	14.6198
(((((((........))))))))	chrX:141290316-141290593(-)$1	1	233	256	15.6637
(((((((........)))))))(	chr6:30692204-30692423(+)$1	1	106	129	16.2797
.((((.(........).))))))	chr12:131357345-131357565(+)$1	1	117	140	13.7247
)((((((........))))))..	chr3:128888925-128889219(-)$1	1	271	294	14.1950
.((.(((........))).)).)	chr4:39457925-39458163(-)$1	1	162	185	15.3458
(((((((........))))))).	chr22:31795500-31795774(+)$1	1	55	78	16.4167
.((((((........))))))..	chr8:27402194-27402458(+)$1	1	203	226	16.4546
(((.(((........))).))))	chr4:151185743-151186022(-)$1	1	84	107	15.9317
..(((((........))))).))	chr7:56130941-56131183(+)$1	1	49	72	14.3314
(((((((........))))))).	chr3:128888868-128889125(-)$1	1	177	200	15.6989
...((((........))))....	chr16:85838483-85838742(+)$1	1	150	173	13.8650
(((((((........))))))).	chr1:228645371-228645654(-)$1	1	198	221	16.4167
....(((........)))...))	chr12:104341530-104341755(+)$1	1	140	163	15.6015
(((((((........))))))).	chr9:138824770-138825030(-)$1	1	232	255	15.6989
.((..((........))..)).)	chr3:101399873-101400125(-)$1	1	28	51	13.3689
((.(.((........))).))))	chr12:51453202-51453474(+)$1	1	42	65	14.9172
(((.(((........))).))))	chrX:118378231-118378511(+)$1	1	69	92	14.7105
((((.((........))...)))	chr6:44221397-44221619(+)$1	1	173	196	15.0919
(((((((........))))))))	chr8:109228540-109228749(-)$1	1	160	183	15.9870
(((((((........))))))).	chr1:93301799-93302050(+)$1	1	71	94	15.6989
(.(((((........)))))...	chr3:50367780-50368053(-)$1	1	154	177	14.8564
.((((((........)))))).(	chr3:148748031-148748276(-)$1	1	139	162	14.3396
..(((((........))))))))	chr1:167511355-167511605(-)$1	1	147	170	14.4993
.((((((........)))...))	chr1:23409947-23410241(+)$1	1	245	268	15.8717
)((((((........))))))((	chr17:38544976-38545219(-)$1	1	43	66	15.9199
.((((((........)))))).)	chr10:74127308-74127558(-)$1	1	42	65	16.3674
.((((((........))))))..	chr11:125447297-125447566(+)$1	1	123	146	13.7327
.((((((........)))))).)	chr11:32605292-32605556(+)$1	1	231	254	13.5479
(((((.(........).))))).	chr16:31202695-31202916(+)$1	1	198	221	13.9061
(((((((........))))))))	chr12:54856920-54857178(-)$1	1	175	198	15.6637
.((.(((........))).)).)	chr11:47186782-47187041(-)$1	1	169	192	15.4073
(((((.(........).))))))	chr8:98864214-98864471(+)$1	1	95	118	16.0104
(((((((........))))))).	chr2:62099492-62099712(-)$1	1	129	152	16.2778
((.((.(........).))))))	chrX:64732476-64732743(-)$1	1	56	79	14.3896
((..(((........)))..)))	chr1:156278747-156279010(-)$1	1	34	57	15.4135
(((((((........))).))))	chr3:13358583-13358843(-)$1	1	217	240	15.2469
...((((........))))...)	chr15:69745952-69746160(+)$1	1	155	178	14.1572
(.(((((........))))).))	chr15:40328175-40328408(-)$1	1	201	224	14.2334
(((((((........))))))..	chr16:2821120-2821388(+)$1	1	37	60	15.8917
.((.(((........))).))..	chr5:140894682-140894922(-)$1	1	35	58	15.6839
(((((((........))))))).	chrX:154007162-154007413(-)$1	1	99	122	16.2778
.((((((........))))))..	chr6:133138518-133138722(+)$1	1	141	164	15.6546
(((((.(........).))))))	chr8:98864165-98864396(+)$1	1	144	167	16.0104
(((..((........))..))).	chr7:75695699-75695982(+)$1	1	255	278	13.9749
.((((((........))))))..	chr17:34050634-34050938(+)$1	1	216	239	16.3272
.((((((........))))))..	chr9:100777842-100778078(+)$1	1	47	70	16.5327
(((((((........))))))).	chr12:53435497-53435782(+)$1	1	256	279	15.6989
((..(((........))).))..	chr6:26285552-26285800(-)$1	1	76	99	14.4597
(((((((........)).)))))	chr8:99114555-99114807(-)$1	1	24	47	14.5015
.((((((........)))))).)	chr9:75784895-75785266(+)$1	1	188	211	13.5479
.((((((........))))))..	chrX:135594256-135594519(+)$1	1	209	232	13.7327
.((((((........))))))..	chr7:139102448-139102692(+)$1	1	33	56	16.0698
(((((((........)))..)))	chr14:23389903-23390160(-)$1	1	155	178	14.1314
(((((((........)))).)))	chr6:485127-485389(-)$1	1	236	259	13.3843
(((((((........))))))).	chr14:103985905-103986160(-)$1	1	215	238	15.6989
(((((((........))))))).	chr14:73586528-73586809(+)$1	1	84	107	15.6989
(.(((((........))))).))	chr12:57031870-57032112(-)$1	1	205	228	14.6503
(((.(((........)))..)))	chr3:141644591-141644847(+)$1	1	73	96	14.4968

#PSSM
g : 0.30	[ : 0.13	: : 0.09	d : 0.07	" : 0.06	f : 0.04	e : 0.04	c : 0.04	i : 0.03	# : 0.03	b : 0.03	a : 0.01	G : 0.01	$ : 0.01	= : 0.01	% : 0.01	! : 0.01	
g : 0.29	f : 0.27	b : 0.09	[ : 0.06	d : 0.06	" : 0.04	c : 0.04	e : 0.04	i : 0.03	$ : 0.01	# : 0.01	= : 0.01	
f : 0.27	g : 0.24	e : 0.13	b : 0.07	d : 0.06	! : 0.04	i : 0.03	" : 0.03	[ : 0.03	c : 0.03	# : 0.01	= : 0.01	
g : 0.24	f : 0.24	[ : 0.12	e : 0.12	! : 0.07	d : 0.07	i : 0.03	# : 0.01	a : 0.01	= : 0.01	c : 0.01	b : 0.01	
c : 0.24	f : 0.24	g : 0.21	e : 0.10	d : 0.06	i : 0.03	! : 0.03	[ : 0.03	= : 0.01	b : 0.01	
c : 0.24	f : 0.23	g : 0.18	e : 0.09	[ : 0.07	b : 0.07	d : 0.04	i : 0.03	= : 0.01	
c : 0.24	f : 0.23	g : 0.18	e : 0.09	a : 0.07	b : 0.07	d : 0.04	i : 0.03	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.24	f : 0.23	g : 0.18	e : 0.09	a : 0.07	b : 0.07	d : 0.04	i : 0.03	= : 0.01	
c : 0.24	f : 0.23	g : 0.18	e : 0.09	] : 0.07	b : 0.07	d : 0.04	i : 0.03	= : 0.01	
c : 0.24	f : 0.23	g : 0.21	e : 0.10	d : 0.06	i : 0.03	2 : 0.03	a : 0.01	3 : 0.01	= : 0.01	b : 0.01	] : 0.01	
f : 0.24	g : 0.23	] : 0.13	e : 0.10	2 : 0.07	d : 0.06	3 : 0.04	b : 0.03	i : 0.03	: : 0.01	= : 0.01	
f : 0.27	g : 0.26	e : 0.13	b : 0.09	3 : 0.06	2 : 0.04	i : 0.03	d : 0.03	4 : 0.01	= : 0.01	c : 0.01	] : 0.01	
g : 0.27	f : 0.27	e : 0.07	b : 0.07	] : 0.06	d : 0.06	3 : 0.06	i : 0.03	c : 0.03	a : 0.01	4 : 0.01	= : 0.01	
g : 0.27	e : 0.13	: : 0.09	] : 0.07	3 : 0.07	4 : 0.06	d : 0.06	c : 0.06	f : 0.04	i : 0.04	b : 0.01	= : 0.01	6 : 0.01	2 : 0.01	
e : 0.15	: : 0.15	g : 0.09	d : 0.07	i : 0.06	3 : 0.06	4 : 0.06	c : 0.06	2 : 0.06	f : 0.04	b : 0.03	] : 0.03	= : 0.03	E : 0.03	h : 0.01	a : 0.01	6 : 0.01	

#score	984.9888094674244
#seq	65
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_UTR_m2_run2.txt

#BEAR
eee[bbwwwwwwwwwwwwwwbbe	chr2:68479238-68479501(-)$1	263	94	117	20.4148
gggggggtttttttttttggggg	chrX:132669711-132669974(-)$1	263	73	96	22.6650
f[ddddyyyyyyyyyyyyyyyyd	chr16:28848181-28848430(+)$1	249	5	28	20.1090
:eeeeeuuuuuuuuuuuueeeee	chr2:220047683-220047989(+)$1	306	124	147	22.7119
ccddddtttttttttttdddd33	chr11:10830174-10830449(-)$1	275	32	55	22.0191
!fffffftttttttttttfffff	chr1:160061131-160061402(-)$1	271	58	81	22.4542
:eeeeettttttttttteeeee:	chr19:11561429-11561713(+)$1	284	19	42	20.5108
=======ttttttttttt=====	chr11:2151170-2151386(-)$1	216	117	140	23.0978
""eeeeettttttttttteeeee	chr17:26694288-26694548(-)$1	260	87	110	22.9889
b[cccyyyyyyyyyyyyyyyycc	chr11:62392743-62392993(-)$1	250	6	29	20.1570
ffffffuuuuuuuuuuuufffff	chr3:183901560-183901872(+)$1	312	119	142	22.8226
c!!cccuuuuuuuuuuuuccc33	chr11:65622431-65622687(-)$1	256	215	238	23.7860
f[ddddwwwwwwwwwwwwwwddd	chr16:57417263-57417515(+)$1	252	60	83	21.3095
======vvvvvvvvvvvvv====	chr17:41167144-41167458(-)$1	314	120	143	23.4690
ffffffftttttttttttfffff	chr4:77996832-77997141(-)$1	309	214	237	22.2729
ee[cccuuuuuuuuuuuuccc55	chr1:226033017-226033316(+)$1	299	51	74	21.8638
!eeeeevvvvvvvvvvvvveeee	chr11:2159464-2159681(-)$1	217	91	114	23.4469
cccddddtttttttttttdddd9	chr2:85548083-85548386(-)$1	303	258	281	21.8218
bb[cccuuuuuuuuuuuuccc]b	chr7:2702077-2702334(+)$1	257	168	191	22.8888
b[ddddtttttttttttdddd]b	chr3:129034653-129034936(-)$1	283	122	145	21.7324
gggggguuuuuuuuuuuuggggg	chr16:81744308-81744633(+)$1	325	235	258	23.3280
c[dddduuuuuuuuuuuudddd]	chr17:79801123-79801350(-)$1	227	136	159	23.3132
e!!cccuuuuuuuuuuuuccc22	chr1:236140672-236141020(-)$1	348	93	116	23.2702
dddddduuuuuuuuuuuudddd:	chr11:2160105-2160322(-)$1	217	117	140	21.8746
[ccc[auuuuuuuuuuuua]ccc	chr5:149781598-149781855(-)$1	257	31	54	23.1651
ffffffuuuuuuuuuuuufffff	chr16:28834266-28834514(+)$1	248	88	111	22.8226
ffffffvvvvvvvvvvvvvffff	chr7:75614060-75614349(+)$1	289	60	83	22.6783
gggggggtttttttttttggggg	chr6:34213429-34213682(+)$1	253	180	203	22.6650
%%ddddtttttttttttdddd22	chr12:57606779-57607046(+)$1	267	175	198	20.5059
eeee[bbtttttttttttbbeee	chr6:41757283-41757593(+)$1	310	239	262	22.0823
[eeeeevvvvvvvvvvvvveeee	chr2:27264202-27264530(+)$1	328	11	34	23.4277
ff!!ccctttttttttttccc22	chr1:55316874-55317128(-)$1	254	165	188	22.7029
fff[ccctttttttttttcccff	chr11:2154237-2154523(-)$1	286	212	235	22.8568
:::cccuuuuuuuuuuuuccc:e	chr12:16035334-16035592(+)$1	258	161	184	19.6138
"""cccvvvvvvvvvvvvvccc]	chr17:7154841-7155107(-)$1	266	29	52	23.2611
:ddddwwwwwwwwwwwwwwdddd	chr19:3208334-3208601(+)$1	267	76	99	20.2803
ggddddvvvvvvvvvvvvvdddd	chr5:150408153-150408475(+)$1	322	258	281	22.8895
ceeeeewwwwwwwwwwwwwweee	chr19:1257371-1257689(+)$1	318	15	38	21.6985
:eeeeeuuuuuuuuuuuueeeee	chr2:27263888-27264123(+)$1	235	210	233	22.7119
======uuuuuuuuuuuu=====	chr17:7215525-7215802(+)$1	277	77	100	23.7406
cc[cccuuuuuuuuuuuuccccc	chr2:242168740-242169011(-)$1	271	99	122	23.4063
dddddddtttttttttttdddd:	chr20:30754567-30754839(+)$1	272	164	187	21.2715
:eeeeevvvvvvvvvvvvveeee	chr17:40946840-40947110(+)$1	270	52	75	22.5861
""eeeeettttttttttteeeee	chr17:26694218-26694488(-)$1	270	27	50	22.9889
eee[bbuuuuuuuuuuuubbeee	chr17:6917495-6917799(+)$1	304	230	253	22.5297
ffffffuuuuuuuuuuuufffff	chr19:8468424-8468662(+)$1	238	191	214	22.8226
=======ttttttttttt=====	chr11:2151135-2151352(-)$1	217	83	106	23.0978
======uuuuuuuuuuuu=====	chr17:7215393-7215640(+)$1	247	209	232	23.7406
b!!ddddtttttttttttdddd3	chr6:31901556-31901810(+)$1	254	126	149	22.6590
dfffffftttttttttttfffff	chr20:57466590-57466871(+)$1	281	198	221	22.1614
!eeeeevvvvvvvvvvvvveeee	chr11:2159486-2159703(-)$1	217	113	136	23.4469
:ddddwwwwwwwwwwwwwwdddd	chr20:307742-308002(+)$1	260	68	91	20.2803
=======ttttttttttt=====	chr11:2151168-2151370(-)$1	202	101	124	23.0978
ffffffvvvvvvvvvvvvvffff	chr2:54895610-54895855(+)$1	245	201	224	22.6783
:fffffftttttttttttfffff	chr19:47112668-47112923(+)$1	255	183	206	21.5934
eee[bbuuuuuuuuuuuubb22e	chr22:33197646-33197905(+)$1	259	103	126	21.9821
!!ddddtttttttttttdddd]g	chr11:2160224-2160428(-)$1	204	170	193	22.2203
[eeeeevvvvvvvvvvvvveeee	chr19:51857403-51857773(-)$1	370	203	226	23.4277
gggggggtttttttttttggggg	chr11:2151371-2151576(-)$1	205	158	181	22.6650

#otherMatches

#Seq PSSM
cgccgccuccccucccccacgcg	chr2:68479238-68479501(-)$1	263	94	117	20.4148
GCCAAAUUAUUCUCCUAUGUUUG	chrX:132669711-132669974(-)$1	263	73	96	22.6650
CCCCCCAUCCCCCCGUUCCCCAG	chr16:28848181-28848430(+)$1	249	5	28	20.1090
UGCUGUGUCCUGUCCUUAGCAGC	chr2:220047683-220047989(+)$1	306	124	147	22.7119
AGCAGCGACUCCUCUGAGCUGAG	chr11:10830174-10830449(-)$1	275	32	55	22.0191
CUGGACACCCUCUCCCUCUGUCC	chr1:160061131-160061402(-)$1	271	58	81	22.4542
CUCUUGCCCCAGAACCUCAAGAA	chr19:11561429-11561713(+)$1	284	19	42	20.5108
GAGGUCCGAAGCUCUGUGGGACC	chr11:2151170-2151386(-)$1	216	117	140	23.0978
ACUGUGGACCCUCCCUACCCACG	chr17:26694288-26694548(-)$1	260	87	110	22.9889
CCCCUUCUCUUUCCCUUAUUUAG	chr11:62392743-62392993(-)$1	250	6	29	20.1570
GGUGGGUUCCCUUUCCUUCCCAC	chr3:183901560-183901872(+)$1	312	119	142	22.8226
UGCUGCCAACUUCUAACCGCAAU	chr11:65622431-65622687(-)$1	256	215	238	23.7860
GCCAGGCCCUCUGCCCACUCCCU	chr16:57417263-57417515(+)$1	252	60	83	21.3095
GGGAGGAUCCUGUUUCCCACCUC	chr17:41167144-41167458(-)$1	314	120	143	23.4690
GGAGCCCCCUCCCAACCCGGGCU	chr4:77996832-77997141(-)$1	309	214	237	22.2729
UGCCACCUCCCCCCACAAGUGCC	chr1:226033017-226033316(+)$1	299	51	74	21.8638
CGUCGCACAUUCGGCCCCCGCGA	chr11:2159464-2159681(-)$1	217	91	114	23.4469
GCUCAACUUCUCCAGUAUGUUGC	chr2:85548083-85548386(-)$1	303	258	281	21.8218
UCUUGGUUCCAUUUCCAUCCAUG	chr7:2702077-2702334(+)$1	257	168	191	22.8888
cucgccuuccucuucccggcgcg	chr3:129034653-129034936(-)$1	283	122	145	21.7324
CAUGCAUGCCCGCCUCUCUGCAU	chr16:81744308-81744633(+)$1	325	235	258	23.3280
CUGGCCUCUCUACAGCACGGCCU	chr17:79801123-79801350(-)$1	227	136	159	23.3132
AGACAGACUUAUACACCCCUGAG	chr1:236140672-236141020(-)$1	348	93	116	23.2702
CCGCCUGUCCCCCUCCCGAGGCC	chr11:2160105-2160322(-)$1	217	117	140	21.8746
UCUCUCUCCAGUCCCCAUGUGAG	chr5:149781598-149781855(-)$1	257	31	54	23.1651
UCUCGCUUUCCUCCAGCCGCGAG	chr16:28834266-28834514(+)$1	248	88	111	22.8226
CCGUGCCCUACGUCCUACCGCAC	chr7:75614060-75614349(+)$1	289	60	83	22.6783
CUGUUCACAAACUACCUCUGGAC	chr6:34213429-34213682(+)$1	253	180	203	22.6650
CUCUGGUAAACAUUCCUCCAGCC	chr12:57606779-57607046(+)$1	267	175	198	20.5059
AGUUCUGUACAUAGUUCCCAAGC	chr6:41757283-41757593(+)$1	310	239	262	22.0823
UCACCUCCACCUGAAGCCUGGGU	chr2:27264202-27264530(+)$1	328	11	34	23.4277
ACAGCAUCAGGUGGGAAAGUGGA	chr1:55316874-55317128(-)$1	254	165	188	22.7029
GGGAGGCCAAACGUCACCGUCCC	chr11:2154237-2154523(-)$1	286	212	235	22.8568
ACCGGAUUGCCCUUCUUUUCCUG	chr12:16035334-16035592(+)$1	258	161	184	19.6138
CCCCGCCCUCCCCGUUCCUGCGA	chr17:7154841-7155107(-)$1	266	29	52	23.2611
CUGCAAAUCCCCGUUCCCCUGCA	chr19:3208334-3208601(+)$1	267	76	99	20.2803
CCAGCCCUUAGUGCAUUCAGGCU	chr5:150408153-150408475(+)$1	322	258	281	22.8895
CAGAAGucuuuuuuucuuuucuu	chr19:1257371-1257689(+)$1	318	15	38	21.6985
CCUGCUUCUCCAGACUUUAGCAG	chr2:27263888-27264123(+)$1	235	210	233	22.7119
UCCCCAAACCCCUUUAGAUgggg	chr17:7215525-7215802(+)$1	277	77	100	23.7406
ACGCUCUUCCCCCUUCCCGAGGU	chr2:242168740-242169011(-)$1	271	99	122	23.4063
GCCUCACCCAUCAAACCAGUGAA	chr20:30754567-30754839(+)$1	272	164	187	21.2715
CCCUGGAACCCCCAUUUCCCCAG	chr17:40946840-40947110(+)$1	270	52	75	22.5861
ACUGUGGACCCUCCCUACCCACG	chr17:26694218-26694488(-)$1	270	27	50	22.9889
AGACUGAAUCCCUUCUCCCAUCU	chr17:6917495-6917799(+)$1	304	230	253	22.5297
CCGGGGAAAAGCUAGAAGCCCCG	chr19:8468424-8468662(+)$1	238	191	214	22.8226
GAGGUCCGAAGCUCUGUGGGACC	chr11:2151135-2151352(-)$1	217	83	106	23.0978
UCCCCAAACCCCUUUAGAUgggg	chr17:7215393-7215640(+)$1	247	209	232	23.7406
CCCUGGGCACUUCCUUCUCCCAC	chr6:31901556-31901810(+)$1	254	126	149	22.6590
GCCUCGGGAACAGUAAGACCGAG	chr20:57466590-57466871(+)$1	281	198	221	22.1614
CGUCGCACAUUCGGCCCCCGCGA	chr11:2159486-2159703(-)$1	217	113	136	23.4469
CUGCACCCCUCCCCCCUUUUGCA	chr20:307742-308002(+)$1	260	68	91	20.2803
GAGGUCCGAAGCUCUGUGGGACC	chr11:2151168-2151370(-)$1	202	101	124	23.0978
GGUUGauuuuuuuuuuuuuuuaa	chr2:54895610-54895855(+)$1	245	201	224	22.6783
AGCAUGCCCUUUGCCGUUGCAUG	chr19:47112668-47112923(+)$1	255	183	206	21.5934
uccagcuccugcuccuucgccGG	chr22:33197646-33197905(+)$1	259	103	126	21.9821
CUCGGGCCGCUCCCCUUUCCGCG	chr11:2160224-2160428(-)$1	204	170	193	22.2203
CUGGGCAGAUCCGAGUGAAGCCU	chr19:51857403-51857773(-)$1	370	203	226	23.4277
GCUGGCCGGAGGGGAAGGGGCUA	chr11:2151371-2151576(-)$1	205	158	181	22.6650

#DB
(((.((..............)))	chr2:68479238-68479501(-)$1	1	94	117	20.4148
(((((((...........)))))	chrX:132669711-132669974(-)$1	1	73	96	22.6650
(.((((................)	chr16:28848181-28848430(+)$1	1	5	28	20.1090
.(((((............)))))	chr2:220047683-220047989(+)$1	1	124	147	22.7119
((((((...........))))..	chr11:10830174-10830449(-)$1	1	32	55	22.0191
.((((((...........)))))	chr1:160061131-160061402(-)$1	1	58	81	22.4542
.(((((...........))))).	chr19:11561429-11561713(+)$1	1	19	42	20.5108
(((((((...........)))))	chr11:2151170-2151386(-)$1	1	117	140	23.0978
..(((((...........)))))	chr17:26694288-26694548(-)$1	1	87	110	22.9889
(.(((................))	chr11:62392743-62392993(-)$1	1	6	29	20.1570
((((((............)))))	chr3:183901560-183901872(+)$1	1	119	142	22.8226
(..(((............)))..	chr11:65622431-65622687(-)$1	1	215	238	23.7860
(.((((..............)))	chr16:57417263-57417515(+)$1	1	60	83	21.3095
((((((.............))))	chr17:41167144-41167458(-)$1	1	120	143	23.4690
)((((((...........)))))	chr4:77996832-77997141(-)$1	1	214	237	22.2729
((.(((............)))..	chr1:226033017-226033316(+)$1	1	51	74	21.8638
.(((((.............))))	chr11:2159464-2159681(-)$1	1	91	114	23.4469
(((((((...........)))).	chr2:85548083-85548386(-)$1	1	258	281	21.8218
((.(((............))).)	chr7:2702077-2702334(+)$1	1	168	191	22.8888
(.((((...........)))).)	chr3:129034653-129034936(-)$1	1	122	145	21.7324
((((((............)))))	chr16:81744308-81744633(+)$1	1	235	258	23.3280
(.((((............)))).	chr17:79801123-79801350(-)$1	1	136	159	23.3132
(..(((............)))..	chr1:236140672-236141020(-)$1	1	93	116	23.2702
))((((............)))).	chr11:2160105-2160322(-)$1	1	117	140	21.8746
.(((.(............).)))	chr5:149781598-149781855(-)$1	1	31	54	23.1651
((((((............)))))	chr16:28834266-28834514(+)$1	1	88	111	22.8226
((((((.............))))	chr7:75614060-75614349(+)$1	1	60	83	22.6783
(((((((...........)))))	chr6:34213429-34213682(+)$1	1	180	203	22.6650
..((((...........))))..	chr12:57606779-57607046(+)$1	1	175	198	20.5059
((((.((...........)))))	chr6:41757283-41757593(+)$1	1	239	262	22.0823
.(((((.............))))	chr2:27264202-27264530(+)$1	1	11	34	23.4277
((..(((...........)))..	chr1:55316874-55317128(-)$1	1	165	188	22.7029
(((.(((...........)))))	chr11:2154237-2154523(-)$1	1	212	235	22.8568
...(((............))).(	chr12:16035334-16035592(+)$1	1	161	184	19.6138
...(((.............))).	chr17:7154841-7155107(-)$1	1	29	52	23.2611
.((((..............))))	chr19:3208334-3208601(+)$1	1	76	99	20.2803
((((((.............))))	chr5:150408153-150408475(+)$1	1	258	281	22.8895
)(((((..............)))	chr19:1257371-1257689(+)$1	1	15	38	21.6985
.(((((............)))))	chr2:27263888-27264123(+)$1	1	210	233	22.7119
((((((............)))))	chr17:7215525-7215802(+)$1	1	77	100	23.7406
((.(((............)))))	chr2:242168740-242169011(-)$1	1	99	122	23.4063
)))((((...........)))).	chr20:30754567-30754839(+)$1	1	164	187	21.2715
.(((((.............))))	chr17:40946840-40947110(+)$1	1	52	75	22.5861
..(((((...........)))))	chr17:26694218-26694488(-)$1	1	27	50	22.9889
(((.((............)))))	chr17:6917495-6917799(+)$1	1	230	253	22.5297
((((((............)))))	chr19:8468424-8468662(+)$1	1	191	214	22.8226
(((((((...........)))))	chr11:2151135-2151352(-)$1	1	83	106	23.0978
((((((............)))))	chr17:7215393-7215640(+)$1	1	209	232	23.7406
(..((((...........)))).	chr6:31901556-31901810(+)$1	1	126	149	22.6590
(((((((...........)))))	chr20:57466590-57466871(+)$1	1	198	221	22.1614
.(((((.............))))	chr11:2159486-2159703(-)$1	1	113	136	23.4469
.((((..............))))	chr20:307742-308002(+)$1	1	68	91	20.2803
(((((((...........)))))	chr11:2151168-2151370(-)$1	1	101	124	23.0978
((((((.............))))	chr2:54895610-54895855(+)$1	1	201	224	22.6783
.((((((...........)))))	chr19:47112668-47112923(+)$1	1	183	206	21.5934
(((.((............))..)	chr22:33197646-33197905(+)$1	1	103	126	21.9821
..((((...........)))).)	chr11:2160224-2160428(-)$1	1	170	193	22.2203
.(((((.............))))	chr19:51857403-51857773(-)$1	1	203	226	23.4277
(((((((...........)))))	chr11:2151371-2151576(-)$1	1	158	181	22.6650

#PSSM
f : 0.16	: : 0.13	e : 0.10	c : 0.10	= : 0.10	g : 0.08	! : 0.06	b : 0.06	" : 0.05	d : 0.05	[ : 0.05	% : 0.01	
e : 0.23	f : 0.18	= : 0.10	g : 0.08	[ : 0.08	c : 0.06	! : 0.06	d : 0.06	" : 0.05	b : 0.01	% : 0.01	: : 0.01	
e : 0.25	d : 0.20	f : 0.16	= : 0.10	g : 0.06	! : 0.06	c : 0.05	[ : 0.05	: : 0.01	" : 0.01	
d : 0.23	e : 0.20	f : 0.15	c : 0.15	= : 0.10	[ : 0.06	g : 0.06	! : 0.01	
d : 0.23	e : 0.18	c : 0.16	f : 0.15	= : 0.10	g : 0.06	b : 0.05	[ : 0.03	
d : 0.20	e : 0.18	f : 0.15	c : 0.15	= : 0.10	b : 0.06	g : 0.06	w : 0.03	y : 0.01	a : 0.01	
u : 0.32	v : 0.16	w : 0.08	t : 0.08	f : 0.06	g : 0.05	= : 0.05	d : 0.05	y : 0.03	e : 0.03	c : 0.03	b : 0.01	
t : 0.38	u : 0.32	v : 0.16	w : 0.08	y : 0.03	
t : 0.38	u : 0.32	v : 0.16	w : 0.08	y : 0.03	
t : 0.38	u : 0.32	v : 0.16	w : 0.08	y : 0.03	
t : 0.38	u : 0.32	v : 0.16	w : 0.08	y : 0.03	
t : 0.38	u : 0.32	v : 0.16	w : 0.08	y : 0.03	
t : 0.38	u : 0.32	v : 0.16	w : 0.08	y : 0.03	
t : 0.38	u : 0.32	v : 0.16	w : 0.08	y : 0.03	
t : 0.38	u : 0.32	v : 0.16	w : 0.08	y : 0.03	
t : 0.38	u : 0.32	v : 0.16	w : 0.08	y : 0.03	
t : 0.38	u : 0.32	v : 0.16	w : 0.08	y : 0.03	
u : 0.32	t : 0.30	v : 0.16	w : 0.08	d : 0.06	y : 0.03	e : 0.01	
v : 0.16	d : 0.15	c : 0.13	f : 0.11	w : 0.08	e : 0.08	= : 0.08	g : 0.06	b : 0.05	y : 0.03	a : 0.01	
d : 0.20	e : 0.16	f : 0.15	c : 0.15	= : 0.10	g : 0.06	w : 0.05	b : 0.05	y : 0.03	] : 0.01	
e : 0.22	d : 0.22	c : 0.16	f : 0.15	= : 0.10	g : 0.06	y : 0.03	b : 0.01	2 : 0.01	
e : 0.22	f : 0.16	d : 0.15	= : 0.10	g : 0.06	c : 0.06	2 : 0.06	] : 0.05	3 : 0.03	b : 0.01	y : 0.01	5 : 0.01	: : 0.01	
e : 0.25	f : 0.16	= : 0.10	g : 0.08	d : 0.08	3 : 0.05	: : 0.05	c : 0.05	2 : 0.05	b : 0.03	] : 0.03	5 : 0.01	9 : 0.01	

#score	1320.0892466878338
#seq	59
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_UTR_m1_run1.txt

#BEAR
dddffffff!!a[a[bboooooobb]a]a22ffffff]dd	chr11:1774029-1774288(-)$1	259	40	80	13.2527
eeea[ggggggg[eeeeeooooooeeeee]ggggggg]a4	chr19:10941707-10941984(+)$1	277	201	241	15.9447
[eeeee[===========oooooo===========22eee	chr19:2101775-2102069(-)$1	294	181	221	18.3807
d[a!!bbggggggg!!cccnnnnncccggggggg]bb444	chr11:66043957-66044207(+)$1	250	146	186	14.0553
i[ccc[ccc$$$$$ddddoooooodddd]ccc]ccc]iii	chr9:140175265-140175563(+)$1	298	35	75	15.3417
a[dddd[eeeee####bboooooobb4444eeeeedddd]	chr1:6695255-6695500(-)$1	245	69	109	15.8175
!!iiiiiiiii####cccooooooccc4444iiiiiiiii	chr3:48509674-48509955(-)$1	281	81	121	20.9709
[ccc"""bb[bb"""cccooooooccc333bb]bb]ccc5	chr2:86253201-86253484(-)$1	283	197	237	17.1815
!!ggggggg!!bb!!cccooooooccc22bb22ggggggg	chr11:118915088-118915370(-)$1	282	115	155	17.5975
===========####cccooooooccc4444=========	chr7:4804567-4804911(+)$1	344	5	45	21.8431
============]==============22a]=========	chr1:10520238-10520542(-)$1	304	256	296	15.8435
[===========[ffffffmmmmffffff]==========	chr15:74701855-74702277(-)$1	422	308	348	14.3917
iiiiiiii!!bbccccccooooooccc]ccc]bbiiiiii	chr17:38247859-38248088(+)$1	229	152	192	17.7492
eebb[ccc[iiiiiiiii[aooooooa]iiiiiiiii333	chr7:73610388-73610685(+)$1	297	133	173	16.3682
=======!!ffffff[bboooooobb]ffffff]======	chr7:44252586-44252874(+)$1	288	70	110	16.9197
d[a!!bbggggggg!!cccnnnnncccggggggg]bb444	chr11:66044063-66044309(+)$1	246	40	80	14.0553
===============ccc[bb!!==============[ff	chr1:16786075-16786361(+)$1	286	1	41	14.2314
eeeee:iiiiiiiii[a[ccclllccc]a]iiiiiiiiiD	chr17:40554532-40554779(-)$1	247	174	214	13.1401
ddd[ccc[dddd[a!!ddddllldddd333a]dddd]ccc	chr3:47892717-47892969(-)$1	252	168	208	12.3259
eebb[ccc[a[cccddddoooooodddd]ccc]a]cccbb	chr8:143817377-143817622(+)$1	245	149	189	14.7103
ffffff"""bb[ccccccooooooccc]cccbb333ffff	chr6:42047218-42047467(+)$1	249	77	117	15.0986
[eeeee[ccc!!eeeee!!aooooooa22eeeee22ccc]	chr17:21145011-21145295(-)$1	284	196	236	13.3554
gggg!!ccc[ccc[ddddooooooddddccc]ccc]gggg	chr22:41642106-41642384(-)$1	278	6	46	16.1695
gg"""a[==========aooooooa]==========]a33	chr19:7978273-7978574(+)$1	301	134	174	20.0391
eee[eeeee[a!!bbccclllccc]bb333a]eeeee]ee	chr22:22274254-22274545(-)$1	291	239	279	12.4307
ee"""iiiiiiiii!!dddd"""bb!!=============	chr20:307891-308141(+)$1	250	105	145	14.2386
ddd"""hhhhhhhh[cccooooooccchhhhhhhh]dddd	chr11:44641480-44641786(+)$1	306	258	298	14.0683
$$$eeeeea[dddd!!bboooooobb22dddd333a]eee	chr16:30786222-30786488(+)$1	266	21	61	13.9250
============"""cccooooooccc55555========	chr10:102122043-102122257(+)$1	214	160	200	18.0605
eee!!iiiiiiiii[cccooooooccc333iiiiiiiii2	chr17:37076366-37076621(+)$1	255	83	123	20.9861
::===========[bbbboooooobb]bb]==========	chr1:27731365-27731652(-)$1	287	197	237	17.1510
[ccc####eeeee####ccclllccc4444eeeee]ccc3	chr17:80201247-80201505(-)$1	258	176	216	14.3654
cc"""ggggggg####ddddmmmmdddd4444ggggggg]	chr17:7215528-7215804(+)$1	276	140	180	13.9793
eeeeeggggggg[cccbboooooobb4444ccc]gggggg	chr19:19221997-19222386(+)$1	389	55	95	17.8884
=============zzzzzzzzzzzzzzzzz==========	chr19:12810508-12810757(-)$1	249	180	220	13.9013
eeee"""bb[ccc####ccclllccc333ccc]bb]eeee	chr22:22275512-22275848(-)$1	336	46	86	13.9901
#dddd!!ccc!!bbddddoooooodddd]bbccc333ddd	chr1:160184637-160184883(+)$1	246	41	81	14.4346
ddd:==========a[bboooooobb]a]==========:	chr1:33789719-33790003(-)$1	284	210	250	17.9647
fff####eeeee"""cccooooooccc22eeeee333fff	chr19:19222982-19223250(+)$1	268	12	52	17.0018
ggggggg[ccc!!ccc[ammmma]ccc333ccc22ggggg	chr3:49758001-49758253(-)$1	252	1	41	14.2320
dd!!eeeee[ccc####bbnnnnnbb4444ccc]eeeee4	chr1:11847664-11847941(-)$1	277	69	109	13.2969
[ccc[a[ggggggg[cccnnnnncccggggggga]ccc]b	chr19:55998518-55998769(+)$1	251	134	174	14.3452
!!ccc!!ggggggg[bbaooooooa]bbgggggggccca2	chr1:36068017-36068225(-)$1	208	40	80	16.8693
========="""bb!!bboooooobbbb22==========	chr1:27732586-27732826(-)$1	240	132	172	19.8479
ggggglllgggggggcccooooooccc::::iiiiiiiii	chr5:175955584-175955842(-)$1	258	109	149	13.8764
&&dddd"""iiiiiiiiiooooooiiiiiiiiidddd22f	chr3:49763571-49763825(-)$1	254	99	139	14.3191
========[a!!bb[bboooooobb]bb22a]========	chr19:2429227-2429489(-)$1	262	172	212	17.6730
g####ccc[ccc[bb[bboooooobbbbcccccc333ggg	chr1:160967738-160968011(-)$1	273	175	215	16.5082
444eeeeecccgggggggoooooogggggggggggggg[b	chr9:130267688-130268009(-)$1	321	52	92	14.8964
bbggggggg[aggggggglllggggggg]a]ggggggg33	chr3:39138418-39138736(-)$1	318	254	294	12.9668
[ccc####eeeee[a[bboooooobb]a22eeeee4444c	chr17:80201118-80201415(-)$1	297	247	287	16.3892

#otherMatches

#Seq PSSM
UCCCGGGCCCGUUGAGGAUGAGGCCGCUAGAGGCCUGAGG	chr11:1774029-1774288(-)$1	259	40	80	13.2527
AAGGGGCCCUGGAGCUCCAGGCAGGGGGCGCUGGGGUGUU	chr19:10941707-10941984(+)$1	277	201	241	15.9447
GGGGGCCGAGUCCUUGAAUGUGGCUUCAGGGGCUCCUGUC	chr19:2101775-2102069(-)$1	294	181	221	18.3807
CUCUACUGCCCUGGCUGCAGUCAGUGCCCAGGGCGAGGAA	chr11:66043957-66044207(+)$1	250	146	186	14.0553
CCUGGACGCCUCCCGUGGAUGGGCCCACCGCGCCCACGGG	chr9:140175265-140175563(+)$1	298	35	75	15.3417
CUGACCGCAGCCCGCCGCCCUGUAGUUCUUGGCUGGGUCU	chr1:6695255-6695500(-)$1	245	69	109	15.8175
CCUCAGGCAGAGCCCUACUCAGCUGUACCUGUCUGCCUGG	chr3:48509674-48509955(-)$1	281	81	121	20.9709
UGCCUCUGCUGUGACCUCCUUCCAGAGCUAGCUGCUGGCC	chr2:86253201-86253484(-)$1	283	197	237	17.1815
CUGGCCUUCCUCUGUGCAUCACUCUGCUAGGUUGGGGGCC	chr11:118915088-118915370(-)$1	282	115	155	17.5975
UUCACUGCUUCAUUGCCAAGGGCGUGGAAAGGGGGUGGUG	chr7:4804567-4804911(+)$1	344	5	45	21.8431
ucugucaccuagucuggagugcaguggcacauucucggcu	chr1:10520238-10520542(-)$1	304	256	296	15.8435
AGGGUUGGGGGGCGGGGGGCCUCCUCCCUUCCUCUCAGCC	chr15:74701855-74702277(-)$1	422	308	348	14.3917
AUGUGUGCGUUCCUCUGCGUGAAUGUGUGAGUGAGUACAC	chr17:38247859-38248088(+)$1	229	152	192	17.7492
GGUGGUGCUGGUGCUGCACUGGGCUGACUGCGGCGCUGAC	chr7:73610388-73610685(+)$1	297	133	173	16.3682
CCUGGUGUUUGGAUGGUCAGCUGGGAGUGUCCAUCAUCAG	chr7:44252586-44252874(+)$1	288	70	110	16.9197
CUCUACUGCCCUGGCUGCAGUCAGUGCCCAGGGCGAGGAA	chr11:66044063-66044309(+)$1	246	40	80	14.0553
CAGCAGUGUUUAUCUCUGGCCAGUUGUCUGGUUUCCAUGU	chr1:16786075-16786361(+)$1	286	1	41	14.2314
GGGACAAGGUCCCUUGGUGCUGAUGGCCUGAAGGGGCCUG	chr17:40554532-40554779(-)$1	247	174	214	13.1401
UGCCUUGUGGAGGUUUGACACCAUGUCCCUAGCUCCCCAA	chr3:47892717-47892969(-)$1	252	168	208	12.3259
GGGUAGCCUUGUGGCUGAGAGGGGUCAGACUAGGUGGCAC	chr8:143817377-143817622(+)$1	245	149	189	14.7103
CACAGUUCAACUCCuuuuauuuugagacagggucucgcug	chr6:42047218-42047467(+)$1	249	77	117	15.0986
AGACCUGCAUGUGCAGGGAGGCCUGGCAGCCUGCCGAUGG	chr17:21145011-21145295(-)$1	284	196	236	13.3554
CCCUGCUCUGUUGUGGGGAGUUGGCCCCCAGGGGAAAGGG	chr22:41642106-41642384(-)$1	278	6	46	16.1695
ggcugagggugggggugcgagguggUCACUCCCAUCGUGC	chr19:7978273-7978574(+)$1	301	134	174	20.0391
GGACGGGGUGCAGACGGCAGGGCCAGUAUGGGGCCCCCUC	chr22:22274254-22274545(-)$1	291	239	279	12.4307
UUAUCCCCGGAGCGCUAGGGCCCGCCCCUCCGCUGGGGCC	chr20:307891-308141(+)$1	250	105	145	14.2386
CUUCUCCUGGGAGAAGGUGGGCUGGCCUUUCUUGGCAAGC	chr11:44641480-44641786(+)$1	306	258	298	14.0683
CUUCCCAGGAGGGGAAGGGACAGACCAGCCCCAGCCGCUG	chr16:30786222-30786488(+)$1	266	21	61	13.9250
GGGUUAGGAAUCUCUUCACUACCCUGAUUCUUGAUUCCUG	chr10:102122043-102122257(+)$1	214	160	200	18.0605
UGUCACUCCAGGCAUAUGUUUCCCCAUCUCUGUCUGGGGC	chr17:37076366-37076621(+)$1	255	83	123	20.9861
GGCCAGGGGGCUUUGCUCAUGAGAGAUGUCAGGCUUCCUG	chr1:27731365-27731652(-)$1	287	197	237	17.1510
UGUGCCCUGAGGUUCCCAGGAUGCCUUCUCGCCUCUCACU	chr17:80201247-80201505(-)$1	258	176	216	14.3654
CAUCUGGGAGGGCCCUGCCCCCAUGGGCUUUACCCUUCCC	chr17:7215528-7215804(+)$1	276	140	180	13.9793
CAGGCUCAGAGCCAGACCGCGCCUGGACCUUCUUGUUCUG	chr19:19221997-19222386(+)$1	389	55	95	17.8884
AGGGGCACUCAGUACACAUUCCAUAAAUUAGCUGGGUGUC	chr19:12810508-12810757(-)$1	249	180	220	13.9013
UCAGAGGCCAUCUGCAGGGCCAAGCCACAGGAAGGGCUGA	chr22:22275512-22275848(-)$1	336	46	86	13.9901
AAGGAAGAAGCCAGACUGGUUAGACAGUACUCUUAACUCC	chr1:160184637-160184883(+)$1	246	41	81	14.4346
AGUGCUUUGUCCUGGACUCCACUCAGCCUCAGGAUGGGGA	chr1:33789719-33790003(-)$1	284	210	250	17.9647
GUGACCGUGAGUGUUGCUUUCGACAGCUGGCUCAGCACAC	chr19:19222982-19223250(+)$1	268	12	52	17.0018
GGCACUGAUAUAAUCCGCAUCUGGGGAGUGGUAGGUAGUG	chr3:49758001-49758253(-)$1	252	1	41	14.2320
UUAGUGCCCGCCUAGGAGUUGAGUACAGUGAGGAGGGUGG	chr1:11847664-11847941(-)$1	277	69	109	13.2969
GUCCGUGCCCCAGGCUGGGAGAGCUAUCUGGGGAGGGGGA	chr19:55998518-55998769(+)$1	251	134	174	14.3452
cagagguugcagugagccuagaucgcgccacuguacucca	chr1:36068017-36068225(-)$1	208	40	80	16.8693
GUGCUUUCAUCAGAACCCUAAAAUGGUCGUUGAAGGCGCC	chr1:27732586-27732826(-)$1	240	132	172	19.8479
GGCACUGAGUGCCAGGGGUCCGCUCCCUCAGUGGGGCCGG	chr5:175955584-175955842(-)$1	258	109	149	13.8764
UCCUCAAGUUUCGGCAGCUGUGCUGCUGCUGGAUGGGCUG	chr3:49763571-49763825(-)$1	254	99	139	14.3191
UGGUAGGGAGCUUUGCCUGCCCCGGGGAUACCCUCUGCCA	chr19:2429227-2429489(-)$1	262	172	212	17.6730
cauaguggugcaugccuguaaucccagcugcucaggagcc	chr1:160967738-160968011(-)$1	273	175	215	16.5082
CCAGGCCCCCUCCCCUGCUGCUUUGCGGGGGGCAGGGCAG	chr9:130267688-130268009(-)$1	321	52	92	14.8964
GAGGCAUUGUGUCCUGGAUCGUCUGGGAGCCCAGUGUCAA	chr3:39138418-39138736(-)$1	318	254	294	12.9668
AGGGCUUCGAAGGUGUGCACCUUGGUUCUCCCUUCUCCUC	chr17:80201118-80201415(-)$1	297	247	287	16.3892

#DB
(((((((((..(.(.((......)).).)..)))))).))	chr11:1774029-1774288(-)$1	1	40	80	13.2527
((((.(((((((.(((((......))))).))))))).).	chr19:10941707-10941984(+)$1	1	201	241	15.9447
.(((((.(((((((((((......)))))))))))..)))	chr19:2101775-2102069(-)$1	1	181	221	18.3807
(.(..(((((((((..(((.....)))))))))).))...	chr11:66043957-66044207(+)$1	1	146	186	14.0553
(.(((.(((.....((((......)))).))).))).)))	chr9:140175265-140175563(+)$1	1	35	75	15.3417
(.((((.(((((....((......))....))))))))).	chr1:6695255-6695500(-)$1	1	69	109	15.8175
..(((((((((....(((......)))....)))))))))	chr3:48509674-48509955(-)$1	1	81	121	20.9709
.(((...((.((...(((......)))...)).)).))).	chr2:86253201-86253484(-)$1	1	197	237	17.1815
..(((((((..((..(((......)))..))..)))))))	chr11:118915088-118915370(-)$1	1	115	155	17.5975
(((((((((((....(((......)))....)))))))))	chr7:4804567-4804911(+)$1	1	5	45	21.8431
)))))))))))).))))))))))))))..).)))))))))	chr1:10520238-10520542(-)$1	1	256	296	15.8435
.(((((((((((.((((((....)))))).))))))))))	chr15:74701855-74702277(-)$1	1	308	348	14.3917
((((((((..((((((((......))).))).))))))))	chr17:38247859-38248088(+)$1	1	152	192	17.7492
((((.(((.(((((((((.(......).)))))))))...	chr7:73610388-73610685(+)$1	1	133	173	16.3682
(((((((..((((((.((......)).)))))).))))))	chr7:44252586-44252874(+)$1	1	70	110	16.9197
(.(..(((((((((..(((.....)))))))))).))...	chr11:66044063-66044309(+)$1	1	40	80	14.0553
((((((((((((((((((.((..((((((((((((((.((	chr1:16786075-16786361(+)$1	1	1	41	14.2314
))))).(((((((((.(.(((...))).).))))))))))	chr17:40554532-40554779(-)$1	1	174	214	13.1401
(((.(((.((((.(..((((...))))...).)))).)))	chr3:47892717-47892969(-)$1	1	168	208	12.3259
))((.(((.(.(((((((......)))).))).).)))))	chr8:143817377-143817622(+)$1	1	149	189	14.7103
((((((...((.((((((......))).)))))...))))	chr6:42047218-42047467(+)$1	1	77	117	15.0986
.(((((.(((..(((((..(......)..)))))..))).	chr17:21145011-21145295(-)$1	1	196	236	13.3554
((((..(((.(((.((((......))))))).))).))))	chr22:41642106-41642384(-)$1	1	6	46	16.1695
((...(.(((((((((((......).)))))))))).)..	chr19:7978273-7978574(+)$1	1	134	174	20.0391
(((.(((((.(..(((((...))).))...).))))).))	chr22:22274254-22274545(-)$1	1	239	279	12.4307
((...(((((((((..((((...((..(((((((((((((	chr20:307891-308141(+)$1	1	105	145	14.2386
(((...((((((((.(((......))))))))))).))))	chr11:44641480-44641786(+)$1	1	258	298	14.0683
...((((((.((((..((......))..))))...).)))	chr16:30786222-30786488(+)$1	1	21	61	13.9250
((((((((((((...(((......))).....))))))))	chr10:102122043-102122257(+)$1	1	160	200	18.0605
(((..(((((((((.(((......)))...))))))))).	chr17:37076366-37076621(+)$1	1	83	123	20.9861
..(((((((((((.((((......)).)).))))))))))	chr1:27731365-27731652(-)$1	1	197	237	17.1510
.(((....(((((....(((...)))....))))).))).	chr17:80201247-80201505(-)$1	1	176	216	14.3654
((...(((((((....((((....))))....))))))).	chr17:7215528-7215804(+)$1	1	140	180	13.9793
((((((((((((.(((((......))....))).))))))	chr19:19221997-19222386(+)$1	1	55	95	17.8884
(((((((((((((.................))))))))))	chr19:12810508-12810757(-)$1	1	180	220	13.9013
((((...((.(((....(((...)))...))).)).))))	chr22:22275512-22275848(-)$1	1	46	86	13.9901
.((((..(((..((((((......)))).)))))...)))	chr1:160184637-160184883(+)$1	1	41	81	14.4346
))).(((((((((((.((......)).).)))))))))).	chr1:33789719-33790003(-)$1	1	210	250	17.9647
(((....(((((...(((......)))..)))))...)))	chr19:19222982-19223250(+)$1	1	12	52	17.0018
(((((((.(((..(((.(....).)))...)))..)))))	chr3:49758001-49758253(-)$1	1	1	41	14.2320
((..(((((.(((....((.....))....))).))))).	chr1:11847664-11847941(-)$1	1	69	109	13.2969
.(((.(.(((((((.(((.....))))))))))).))).)	chr19:55998518-55998769(+)$1	1	134	174	14.3452
..(((..(((((((.(((......).))))))))))))).	chr1:36068017-36068225(-)$1	1	40	80	16.8693
(((((((((...((..((......))))..))))))))))	chr1:27732586-27732826(-)$1	1	132	172	19.8479
(((((...)))))))(((......)))....(((((((((	chr5:175955584-175955842(-)$1	1	109	149	13.8764
..((((...(((((((((......)))))))))))))..)	chr3:49763571-49763825(-)$1	1	99	139	14.3191
((((((((.(..((.((......)).))..).))))))))	chr19:2429227-2429489(-)$1	1	172	212	17.6730
(....(((.(((.((.((......))))))))))...)))	chr1:160967738-160968011(-)$1	1	175	215	16.5082
...))))))))(((((((......)))))))(((((((.(	chr9:130267688-130268009(-)$1	1	52	92	14.8964
(((((((((.((((((((...))))))).).)))))))..	chr3:39138418-39138736(-)$1	1	254	294	12.9668
.(((....(((((.(.((......)).)..)))))....)	chr17:80201118-80201415(-)$1	1	247	287	16.3892

#PSSM
e : 0.17	= : 0.15	d : 0.13	[ : 0.13	g : 0.09	! : 0.05	i : 0.03	f : 0.03	a : 0.01	$ : 0.01	: : 0.01	c : 0.01	# : 0.01	& : 0.01	4 : 0.01	b : 0.01	
e : 0.21	= : 0.17	d : 0.11	c : 0.09	[ : 0.07	g : 0.07	! : 0.05	f : 0.03	i : 0.01	$ : 0.01	: : 0.01	& : 0.01	# : 0.01	4 : 0.01	b : 0.01	
= : 0.19	e : 0.15	d : 0.13	c : 0.11	g : 0.09	" : 0.05	a : 0.03	i : 0.03	b : 0.03	f : 0.03	$ : 0.01	! : 0.01	# : 0.01	4 : 0.01	
= : 0.19	e : 0.13	c : 0.11	g : 0.09	! : 0.07	" : 0.07	d : 0.05	f : 0.03	i : 0.03	b : 0.03	[ : 0.03	# : 0.03	a : 0.01	: : 0.01	
= : 0.21	e : 0.15	" : 0.11	[ : 0.07	! : 0.07	g : 0.07	# : 0.07	c : 0.05	d : 0.05	f : 0.03	i : 0.03	
= : 0.21	g : 0.11	e : 0.11	i : 0.07	c : 0.07	" : 0.05	! : 0.05	# : 0.05	f : 0.03	b : 0.03	d : 0.03	a : 0.03	[ : 0.01	: : 0.01	l : 0.01	
= : 0.21	g : 0.11	c : 0.11	[ : 0.09	i : 0.09	" : 0.07	e : 0.07	# : 0.05	b : 0.03	! : 0.03	f : 0.01	h : 0.01	l : 0.01	
= : 0.23	g : 0.17	c : 0.13	e : 0.11	i : 0.09	b : 0.03	[ : 0.03	" : 0.03	# : 0.03	f : 0.01	! : 0.01	h : 0.01	l : 0.01	
= : 0.21	g : 0.19	c : 0.11	e : 0.11	i : 0.07	[ : 0.07	b : 0.03	! : 0.03	" : 0.03	f : 0.01	d : 0.01	h : 0.01	a : 0.01	
= : 0.19	g : 0.15	[ : 0.13	i : 0.11	c : 0.09	e : 0.07	! : 0.05	a : 0.03	$ : 0.01	f : 0.01	d : 0.01	b : 0.01	h : 0.01	" : 0.01	
= : 0.19	g : 0.15	i : 0.11	c : 0.11	! : 0.09	e : 0.07	b : 0.05	d : 0.03	a : 0.03	$ : 0.01	f : 0.01	[ : 0.01	h : 0.01	" : 0.01	
g : 0.19	= : 0.17	i : 0.09	c : 0.09	! : 0.09	e : 0.07	b : 0.05	# : 0.03	d : 0.03	a : 0.01	$ : 0.01	f : 0.01	[ : 0.01	h : 0.01	" : 0.01	
g : 0.13	[ : 0.11	= : 0.11	c : 0.11	i : 0.09	# : 0.07	b : 0.07	" : 0.05	e : 0.05	! : 0.03	$ : 0.01	] : 0.01	f : 0.01	h : 0.01	d : 0.01	
g : 0.13	# : 0.13	= : 0.09	c : 0.09	i : 0.09	b : 0.09	" : 0.05	[ : 0.05	a : 0.03	e : 0.03	f : 0.03	$ : 0.01	! : 0.01	h : 0.01	d : 0.01	z : 0.01	
! : 0.13	# : 0.13	[ : 0.11	= : 0.07	d : 0.07	c : 0.07	" : 0.05	i : 0.05	b : 0.05	g : 0.05	e : 0.03	f : 0.03	a : 0.03	z : 0.01	
c : 0.31	! : 0.11	# : 0.09	[ : 0.09	b : 0.07	d : 0.07	= : 0.05	e : 0.03	i : 0.03	g : 0.03	f : 0.01	z : 0.01	
c : 0.31	b : 0.23	d : 0.13	= : 0.05	# : 0.05	e : 0.03	i : 0.03	g : 0.03	f : 0.01	a : 0.01	z : 0.01	[ : 0.01	
c : 0.35	b : 0.19	d : 0.13	a : 0.05	o : 0.03	= : 0.03	i : 0.03	g : 0.03	e : 0.01	f : 0.01	[ : 0.01	! : 0.01	z : 0.01	
o : 0.62	c : 0.09	d : 0.05	[ : 0.03	l : 0.03	= : 0.01	f : 0.01	! : 0.01	z : 0.01	m : 0.01	b : 0.01	n : 0.01	
o : 0.62	n : 0.07	c : 0.05	d : 0.05	m : 0.03	a : 0.03	l : 0.03	= : 0.01	b : 0.01	z : 0.01	
o : 0.66	l : 0.09	n : 0.07	m : 0.05	= : 0.01	b : 0.01	c : 0.01	" : 0.01	z : 0.01	
o : 0.66	n : 0.07	l : 0.07	m : 0.05	= : 0.01	! : 0.01	c : 0.01	" : 0.01	z : 0.01	g : 0.01	
o : 0.66	n : 0.07	l : 0.07	m : 0.03	= : 0.01	! : 0.01	c : 0.01	" : 0.01	z : 0.01	a : 0.01	g : 0.01	
o : 0.62	c : 0.07	b : 0.05	n : 0.05	= : 0.03	f : 0.01	l : 0.01	d : 0.01	m : 0.01	z : 0.01	] : 0.01	g : 0.01	
c : 0.35	b : 0.25	d : 0.11	= : 0.05	o : 0.03	a : 0.03	g : 0.03	e : 0.01	f : 0.01	] : 0.01	z : 0.01	i : 0.01	
c : 0.35	b : 0.21	d : 0.11	] : 0.07	= : 0.05	o : 0.03	g : 0.03	e : 0.01	f : 0.01	! : 0.01	z : 0.01	i : 0.01	
c : 0.29	d : 0.11	b : 0.09	= : 0.07	4 : 0.07	] : 0.07	a : 0.05	g : 0.05	e : 0.01	f : 0.01	! : 0.01	2 : 0.01	z : 0.01	3 : 0.01	i : 0.01	
4 : 0.11	3 : 0.11	] : 0.09	g : 0.09	d : 0.09	2 : 0.09	b : 0.09	= : 0.07	f : 0.03	a : 0.03	e : 0.01	h : 0.01	5 : 0.01	z : 0.01	: : 0.01	i : 0.01	
4 : 0.13	2 : 0.13	3 : 0.11	g : 0.09	] : 0.09	= : 0.07	c : 0.07	a : 0.03	f : 0.03	i : 0.03	e : 0.01	h : 0.01	d : 0.01	5 : 0.01	b : 0.01	z : 0.01	: : 0.01	
c : 0.13	4 : 0.13	= : 0.09	g : 0.09	3 : 0.09	2 : 0.07	] : 0.07	b : 0.03	a : 0.03	i : 0.03	e : 0.03	f : 0.01	h : 0.01	d : 0.01	5 : 0.01	z : 0.01	: : 0.01	
c : 0.19	= : 0.17	g : 0.11	e : 0.09	i : 0.07	4 : 0.05	b : 0.05	a : 0.05	] : 0.03	2 : 0.01	f : 0.01	h : 0.01	d : 0.01	5 : 0.01	: : 0.01	
= : 0.21	c : 0.15	g : 0.13	i : 0.11	e : 0.09	] : 0.09	f : 0.03	b : 0.03	2 : 0.01	h : 0.01	d : 0.01	5 : 0.01	4 : 0.01	
= : 0.25	g : 0.15	e : 0.11	i : 0.11	c : 0.11	] : 0.07	f : 0.03	b : 0.03	2 : 0.01	d : 0.01	h : 0.01	3 : 0.01	
= : 0.25	g : 0.15	e : 0.11	i : 0.09	c : 0.07	b : 0.05	] : 0.05	d : 0.03	a : 0.03	3 : 0.03	f : 0.01	h : 0.01	2 : 0.01	
= : 0.27	g : 0.13	i : 0.11	e : 0.09	3 : 0.09	] : 0.07	c : 0.03	b : 0.03	d : 0.03	2 : 0.03	f : 0.01	h : 0.01	
= : 0.25	g : 0.13	i : 0.11	] : 0.09	c : 0.07	3 : 0.07	d : 0.05	2 : 0.03	b : 0.03	e : 0.03	f : 0.01	a : 0.01	4 : 0.01	
= : 0.23	g : 0.15	i : 0.11	c : 0.11	] : 0.07	d : 0.05	e : 0.05	3 : 0.05	f : 0.03	b : 0.03	2 : 0.01	4 : 0.01	
= : 0.21	g : 0.15	c : 0.13	i : 0.11	e : 0.07	] : 0.05	4 : 0.05	d : 0.05	f : 0.03	3 : 0.01	[ : 0.01	a : 0.01	2 : 0.01	
= : 0.21	i : 0.11	g : 0.11	e : 0.09	d : 0.07	c : 0.07	4 : 0.05	3 : 0.05	f : 0.05	a : 0.03	b : 0.01	] : 0.01	2 : 0.01	[ : 0.01	
= : 0.19	g : 0.09	4 : 0.07	e : 0.07	i : 0.07	3 : 0.07	f : 0.07	d : 0.05	] : 0.05	b : 0.05	c : 0.03	2 : 0.03	5 : 0.01	D : 0.01	: : 0.01	

#score	804.3922482186282
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_UTR_m3_run2.txt

#BEAR
"""ffffffcccmmmmccc4444ffff	chr11:88056656-88056906(-)$1	250	73	100	9.4829
ggggggg[ddddmmmmdddd]gggggg	chr7:104752495-104752757(-)$1	262	166	193	10.7111
gggggg[eeeeemmmmeeeeegggggg	chr5:137688299-137688597(+)$1	298	210	237	12.4903
========[cccmmmmccc========	chr1:20236681-20236934(+)$1	253	137	164	10.3744
============mmmm===========	chr1:155657981-155658195(-)$1	214	2	29	10.7107
[bb!!gggggggmmmmggggggg22bb	chr3:196075382-196075634(-)$1	252	132	159	9.1201
[ffffff[ddddmmmmddddffffff]	chr11:3010218-3010476(-)$1	258	199	226	9.8757
b[dddd[eeeeennnnneeeeeddddb	chr1:20235526-20235756(+)$1	230	115	142	8.6599
"""ccc[ddddoooooodddd]ccc22	chr1:20234862-20235130(+)$1	268	220	247	9.5008
"""ddddddddoooooodddd22dddd	chr12:72255091-72255351(+)$1	260	59	86	8.6256
b[dddd[eeeeennnnneeeeeddddb	chr1:20235463-20235687(+)$1	224	178	205	8.6599
ffff!!a[cccammmma]ccc]a22ff	chr7:104752577-104752880(-)$1	303	130	157	9.7145
ffff!!ffffffmmmmffffff4444f	chr4:1386517-1386792(+)$1	275	12	39	8.9027
fffff"""ddddmmmmdddd22fffff	chr12:72234774-72235014(+)$1	240	14	41	10.2845
!eeeee[eeeeemmmmeeeee22eeee	chr11:3009228-3009472(-)$1	244	126	153	11.9808
b!!ffffffcccmmmmccc]ffffffb	chr9:37766831-37767144(+)$1	313	7	34	8.5430
[eeeee[eeeeemmmmeeeee22eeee	chr1:20235285-20235518(+)$1	233	84	111	12.0053
==========oooooo==========:	chrX:41193696-41193954(+)$1	258	220	247	8.5677
[eeeee[eeeeemmmmeeeee22eeee	chr1:20235318-20235555(+)$1	237	51	78	12.0053
hh[ccc[eeeeemmmmeeeee333ccc	chr7:104752274-104752544(-)$1	270	127	154	12.7529
fff[bbeeeeennnnneeeee]bb]ff	chr12:54630888-54631140(-)$1	252	120	147	9.0805
$$$$$a[eeeeellleeeee]a22fff	chr4:1386354-1386645(+)$1	291	151	178	10.1742
ggggggg[ddddmmmmdddd]gggggg	chr7:104752407-104752657(-)$1	250	66	93	10.7111
g:dddd[eeeeennnnneeeee]dddd	chr15:93443364-93443621(+)$1	257	56	83	8.1652
gggggg[ddddnnnnndddd]gggggg	chr9:33935558-33935803(-)$1	245	154	181	9.1108
fffffeeeeeooooooeeeee333fff	chr3:197477070-197477322(+)$1	252	205	232	10.8562
[eeeee[eeeeemmmmeeeee22eeee	chr1:20235206-20235454(+)$1	248	163	190	12.0053
ca[ccc[eeeeemmmmeeeee333ccc	chr15:28508184-28508421(-)$1	237	150	177	13.1487
bbdddd[eeeeellleeeeedddd]bb	chr1:225614985-225615269(-)$1	284	123	150	8.7641
ffffff!!eeeeellleeeeeffffff	chr20:23357783-23358022(-)$1	239	168	195	10.1614
!ccc"""eeeeemmmmeeeee4444cc	chr12:49085095-49085321(-)$1	226	16	43	12.6299
dd[a[gggggggmmmmggggggga]dd	chr17:29632280-29632538(+)$1	258	62	89	9.6448
cc!!bb[eeeeellleeeee]bb22cc	chr12:133404892-133405105(-)$1	213	54	81	9.9335
eeeee[eeeeeooooooeeeee]eeee	chr11:3010357-3010617(-)$1	260	60	87	9.7107
gggggggddddoooooodddd22gggg	chr4:1386821-1387063(+)$1	242	23	50	9.8528
========[cccmmmmccc========	chr1:20236808-20237048(+)$1	240	10	37	10.3744
ffffff!!ddddmmmmdddd333ffff	chr10:98984780-98985033(-)$1	253	148	175	11.1531
dddd####ddddmmmmdddddddd]gg	chr16:81031943-81032182(-)$1	239	83	110	9.3507
ffffff[eeeeeooooooeeeee22ff	chr16:81031841-81032055(-)$1	214	109	136	10.4643
ff!!bb[eeeeellleeeeebb22fff	chr1:20235922-20236195(+)$1	273	58	85	9.9992
!ccc"""eeeeemmmmeeeee4444cc	chr12:49085194-49085430(-)$1	236	125	152	12.6299
c####gggggggmmmmggggggg22cc	chr11:3010980-3011203(-)$1	223	107	134	9.8707
#ccc####ddddmmmmdddd22ccc33	chr7:104753296-104753543(-)$1	247	156	183	10.2824
ffffffffffffmmmmffffff333ff	chr20:23357549-23357805(-)$1	256	192	219	9.1728
"""ccc[ddddoooooodddd]ccc22	chr1:20234939-20235191(+)$1	252	143	170	9.5008
cc[ddddaddddmmmmdddd22a]ddd	chr1:155532349-155532628(-)$1	279	69	96	9.3494
dd[a[gggggggmmmmggggggga]dd	chr17:29632338-29632613(+)$1	275	4	31	9.6448
ddd[bbeeeeennnnneeeee]bb]dd	chr4:1386696-1386961(+)$1	265	21	48	8.3410
b####a[eeeeemmmmeeeee]abb22	chr6:170844171-170844435(-)$1	264	101	128	11.2179
ffffff!!eeeeellleeeeeffffff	chr20:23357702-23357962(-)$1	260	108	135	10.1614
dd[a[gggggggmmmmggggggga]dd	chr17:29632159-29632448(+)$1	289	183	210	9.6448
gggggg[eeeeeooooooeeeeegggg	chr1:246646682-246646929(-)$1	247	120	147	10.7683

#otherMatches

#Seq PSSM
aaugggaguucauucaugauuuugcuc	chr11:88056656-88056906(-)$1	250	73	100	9.4829
CCAUGCUGUACAGGUGUGUGAGGCGUG	chr7:104752495-104752757(-)$1	262	166	193	10.7111
ugggcaagcggcugcugcugcuguucg	chr5:137688299-137688597(+)$1	298	210	237	12.4903
AGCAGUGGUGCAUAGCUGCUUACUGCU	chr1:20236681-20236934(+)$1	253	137	164	10.3744
GUUGGGGGUGUCGCUAGGCGCCCUUAG	chr1:155657981-155658195(-)$1	214	2	29	10.7107
UCAACUUGGGGUAUUUGCUUUAAAGUG	chr3:196075382-196075634(-)$1	252	132	159	9.1201
GUAGAUAGUAAAUAAUUUUGUAUUUGG	chr11:3010218-3010476(-)$1	258	199	226	9.8757
CAUUUCAGAAUUAUAAAAAUUCGGAGG	chr1:20235526-20235756(+)$1	230	115	142	8.6599
GAACUCCUGGGGUUUUGCCUAAGAGGA	chr1:20234862-20235130(+)$1	268	220	247	9.5008
uucaaacuuacuguacuguaauuguuu	chr12:72255091-72255351(+)$1	260	59	86	8.6256
CAUUUCAGAAUUAUAAAAAUUCGGAGG	chr1:20235463-20235687(+)$1	224	178	205	8.6599
CCAGAAGUUGCCUGCUGAGUAUUGGCU	chr7:104752577-104752880(-)$1	303	130	157	9.7145
ggauauagagguuaauauuucuuguag	chr4:1386517-1386792(+)$1	275	12	39	8.9027
CUACUGGCUCUUUUAAAGGAUAGGUGG	chr12:72234774-72235014(+)$1	240	14	41	10.2845
CGCAGAAGUCUCUGAAGAGACAGUCUG	chr11:3009228-3009472(-)$1	244	126	153	11.9808
ugugaaucagaguucacucaugauuug	chr9:37766831-37767144(+)$1	313	7	34	8.5430
ACCAGCAGGGUUGGUUGACUUAGGUUG	chr1:20235285-20235518(+)$1	233	84	111	12.0053
GAGGCCCUUUUGGCUUGGAGGGCUUCG	chrX:41193696-41193954(+)$1	258	220	247	8.5677
ACCAGCAGGGUUGGUUGACUUAGGUUG	chr1:20235318-20235555(+)$1	237	51	78	12.0053
GAUAGCUGUUUUUGUUGGAGCUCUGUU	chr7:104752274-104752544(-)$1	270	127	154	12.7529
UGUGAAAGUAGAUUUCCUGCUAUUGAU	chr12:54630888-54631140(-)$1	252	120	147	9.0805
uaccugcaguucuuugagcuucuugga	chr4:1386354-1386645(+)$1	291	151	178	10.1742
CCAUGCUGUACAGGUGUGUGAGGCGUG	chr7:104752407-104752657(-)$1	250	66	93	10.7111
CUGGGAUGGAGGAUCUGUCUCUCUCUC	chr15:93443364-93443621(+)$1	257	56	83	8.1652
gaaggaggugguggucucauauucuuc	chr9:33935558-33935803(-)$1	245	154	181	9.1108
CCGGCUCUUUGUGAGGAAAGAUCUGCC	chr3:197477070-197477322(+)$1	252	205	232	10.8562
ACCAGCAGGGUUGGUUGACUUAGGUUG	chr1:20235206-20235454(+)$1	248	163	190	12.0053
AGAGGUGGUAGUGAUGGCUGCAAAACC	chr15:28508184-28508421(-)$1	237	150	177	13.1487
UGUCACUGGCUUUGAGGGUCGUGGUCG	chr1:225614985-225615269(-)$1	284	123	150	8.7641
AUGAAUGAAGGAGAGGCUCCUGUUCAU	chr20:23357783-23358022(-)$1	239	168	195	10.1614
AUUCUAAGUUAGUUGUCUAACCACUGA	chr12:49085095-49085321(-)$1	226	16	43	12.6299
AUGUGCUUCUGGUUUUUCAGAAGAGGU	chr17:29632280-29632538(+)$1	258	62	89	9.6448
AAAGGCGUGACAUGGUGUCGGGUGGUU	chr12:133404892-133405105(-)$1	213	54	81	9.9335
GUUGGGAGUUUGGCCUGAGAUUGCUAG	chr11:3010357-3010617(-)$1	260	60	87	9.7107
uccagcuacguguguugauguggagcu	chr4:1386821-1387063(+)$1	242	23	50	9.8528
AGCAGUGGUGCAUAGCUGCUUACUGCU	chr1:20236808-20237048(+)$1	240	10	37	10.3744
GUCCCAGGAUGACUCUUUAUGGGUGGG	chr10:98984780-98985033(-)$1	253	148	175	11.1531
uuucauuuuuaauuuuuugaggaacug	chr16:81031943-81032182(-)$1	239	83	110	9.3507
aauggauauggguugguuccuguuuuc	chr16:81031841-81032055(-)$1	214	109	136	10.4643
UCUGUUGCCUUACUCUAAGGAAGUGGG	chr1:20235922-20236195(+)$1	273	58	85	9.9992
AUUCUAAGUUAGUUGUCUAACCACUGA	chr12:49085194-49085430(-)$1	236	125	152	12.6299
CCCAUAUGAGAGGUAGUUCUUAUUUGU	chr11:3010980-3011203(-)$1	223	107	134	9.8707
AGCCAAAACACUGGAAGGUGGCGGCGG	chr7:104753296-104753543(-)$1	247	156	183	10.2824
UGUUCUUUAAAUGUGUGUUUAGUUUAG	chr20:23357549-23357805(-)$1	256	192	219	9.1728
GAACUCCUGGGGUUUUGCCUAAGAGGA	chr1:20234939-20235191(+)$1	252	143	170	9.5008
GGGCCUGCGCCGGCGCCGGCUUGACAG	chr1:155532349-155532628(-)$1	279	69	96	9.3494
AUGUGCUUCUGGUUUUUCAGAAGAGGU	chr17:29632338-29632613(+)$1	275	4	31	9.6448
gcugacacacaguugauguguggugag	chr4:1386696-1386961(+)$1	265	21	48	8.3410
GAAACUGUUUCCUUAAGGAAGGACUGA	chr6:170844171-170844435(-)$1	264	101	128	11.2179
AUGAAUGAAGGAGAGGCUCCUGUUCAU	chr20:23357702-23357962(-)$1	260	108	135	10.1614
AUGUGCUUCUGGUUUUUCAGAAGAGGU	chr17:29632159-29632448(+)$1	289	183	210	9.6448
AUUUGCGUAAAACAGUGCUUUUGGUAA	chr1:246646682-246646929(-)$1	247	120	147	10.7683

#DB
...(((((((((....)))....))))	chr11:88056656-88056906(-)$1	1	73	100	9.4829
(((((((.((((....)))).))))))	chr7:104752495-104752757(-)$1	1	166	193	10.7111
((((((.(((((....)))))))))))	chr5:137688299-137688597(+)$1	1	210	237	12.4903
((((((((.(((....)))))))))))	chr1:20236681-20236934(+)$1	1	137	164	10.3744
((((((((((((....)))))))))))	chr1:155657981-155658195(-)$1	1	2	29	10.7107
.((..(((((((....)))))))..))	chr3:196075382-196075634(-)$1	1	132	159	9.1201
.((((((.((((....)))))))))).	chr11:3010218-3010476(-)$1	1	199	226	9.8757
(.((((.(((((.....))))))))))	chr1:20235526-20235756(+)$1	1	115	142	8.6599
...(((.((((......)))).)))..	chr1:20234862-20235130(+)$1	1	220	247	9.5008
...((((((((......))))..))))	chr12:72255091-72255351(+)$1	1	59	86	8.6256
(.((((.(((((.....))))))))))	chr1:20235463-20235687(+)$1	1	178	205	8.6599
((((..(.((((....).))).)..))	chr7:104752577-104752880(-)$1	1	130	157	9.7145
((((..((((((....))))))....)	chr4:1386517-1386792(+)$1	1	12	39	8.9027
(((((...((((....))))..)))))	chr12:72234774-72235014(+)$1	1	14	41	10.2845
.(((((.(((((....)))))..))))	chr11:3009228-3009472(-)$1	1	126	153	11.9808
(..(((((((((....))).)))))))	chr9:37766831-37767144(+)$1	1	7	34	8.5430
.(((((.(((((....)))))..))))	chr1:20235285-20235518(+)$1	1	84	111	12.0053
((((((((((......)))))))))).	chrX:41193696-41193954(+)$1	1	220	247	8.5677
.(((((.(((((....)))))..))))	chr1:20235318-20235555(+)$1	1	51	78	12.0053
((.(((.(((((....)))))...)))	chr7:104752274-104752544(-)$1	1	127	154	12.7529
(((.(((((((.....))))).)).))	chr12:54630888-54631140(-)$1	1	120	147	9.0805
.....(.(((((...))))).)..)))	chr4:1386354-1386645(+)$1	1	151	178	10.1742
(((((((.((((....)))).))))))	chr7:104752407-104752657(-)$1	1	66	93	10.7111
).((((.(((((.....))))).))))	chr15:93443364-93443621(+)$1	1	56	83	8.1652
((((((.((((.....)))).))))))	chr9:33935558-33935803(-)$1	1	154	181	9.1108
((((((((((......)))))...)))	chr3:197477070-197477322(+)$1	1	205	232	10.8562
.(((((.(((((....)))))..))))	chr1:20235206-20235454(+)$1	1	163	190	12.0053
)(.(((.(((((....)))))...)))	chr15:28508184-28508421(-)$1	1	150	177	13.1487
((((((.(((((...))))))))).))	chr1:225614985-225615269(-)$1	1	123	150	8.7641
((((((..(((((...)))))))))))	chr20:23357783-23358022(-)$1	1	168	195	10.1614
.(((...(((((....)))))....))	chr12:49085095-49085321(-)$1	1	16	43	12.6299
((.(.(((((((....)))))))).))	chr17:29632280-29632538(+)$1	1	62	89	9.6448
((..((.(((((...))))).))..))	chr12:133404892-133405105(-)$1	1	54	81	9.9335
(((((.(((((......))))).))))	chr11:3010357-3010617(-)$1	1	60	87	9.7107
(((((((((((......))))..))))	chr4:1386821-1387063(+)$1	1	23	50	9.8528
((((((((.(((....)))))))))))	chr1:20236808-20237048(+)$1	1	10	37	10.3744
((((((..((((....))))...))))	chr10:98984780-98985033(-)$1	1	148	175	11.1531
((((....((((....)))))))).))	chr16:81031943-81032182(-)$1	1	83	110	9.3507
((((((.(((((......)))))..))	chr16:81031841-81032055(-)$1	1	109	136	10.4643
((..((.(((((...)))))))..)))	chr1:20235922-20236195(+)$1	1	58	85	9.9992
.(((...(((((....)))))....))	chr12:49085194-49085430(-)$1	1	125	152	12.6299
(....(((((((....)))))))..))	chr11:3010980-3011203(-)$1	1	107	134	9.8707
.(((....((((....))))..)))..	chr7:104753296-104753543(-)$1	1	156	183	10.2824
((((((((((((....))))))...))	chr20:23357549-23357805(-)$1	1	192	219	9.1728
...(((.((((......)))).)))..	chr1:20234939-20235191(+)$1	1	143	170	9.5008
((.(((((((((....))))..).)))	chr1:155532349-155532628(-)$1	1	69	96	9.3494
((.(.(((((((....)))))))).))	chr17:29632338-29632613(+)$1	1	4	31	9.6448
(((.(((((((.....))))).)).))	chr4:1386696-1386961(+)$1	1	21	48	8.3410
(....(.(((((....))))).)))..	chr6:170844171-170844435(-)$1	1	101	128	11.2179
((((((..(((((...)))))))))))	chr20:23357702-23357962(-)$1	1	108	135	10.1614
((.(.(((((((....)))))))).))	chr17:29632159-29632448(+)$1	1	183	210	9.6448
((((((.(((((......)))))))))	chr1:246646682-246646929(-)$1	1	120	147	10.7683

#PSSM
f : 0.21	g : 0.13	[ : 0.09	b : 0.09	d : 0.09	" : 0.07	= : 0.07	c : 0.07	! : 0.05	h : 0.01	$ : 0.01	e : 0.01	# : 0.01	
f : 0.23	g : 0.11	e : 0.09	c : 0.09	d : 0.09	" : 0.07	= : 0.07	b : 0.03	[ : 0.03	# : 0.03	! : 0.01	h : 0.01	$ : 0.01	: : 0.01	a : 0.01	
f : 0.21	g : 0.11	d : 0.11	[ : 0.11	e : 0.09	" : 0.07	= : 0.07	! : 0.05	c : 0.05	# : 0.03	b : 0.01	$ : 0.01	
f : 0.23	d : 0.13	c : 0.13	g : 0.11	e : 0.09	= : 0.07	! : 0.05	a : 0.05	[ : 0.03	# : 0.03	$ : 0.01	
f : 0.19	g : 0.11	d : 0.11	e : 0.09	= : 0.07	c : 0.07	b : 0.07	# : 0.07	! : 0.05	[ : 0.05	" : 0.03	$ : 0.01	
g : 0.21	f : 0.15	d : 0.11	e : 0.09	= : 0.07	c : 0.07	b : 0.07	" : 0.05	! : 0.03	a : 0.03	# : 0.03	[ : 0.01	
[ : 0.38	g : 0.15	f : 0.09	= : 0.07	e : 0.07	" : 0.05	! : 0.05	d : 0.03	# : 0.03	a : 0.01	
e : 0.44	g : 0.09	d : 0.09	f : 0.07	[ : 0.07	= : 0.07	! : 0.05	# : 0.03	" : 0.01	a : 0.01	
e : 0.48	d : 0.24	g : 0.09	f : 0.07	[ : 0.03	= : 0.03	c : 0.01	
e : 0.48	d : 0.24	c : 0.09	g : 0.09	= : 0.03	f : 0.03	
e : 0.46	d : 0.24	c : 0.09	g : 0.09	f : 0.03	o : 0.03	= : 0.01	
e : 0.40	d : 0.15	o : 0.13	g : 0.09	c : 0.07	n : 0.05	f : 0.03	= : 0.01	a : 0.01	
m : 0.59	o : 0.17	n : 0.11	l : 0.07	e : 0.03	
m : 0.59	o : 0.17	n : 0.11	l : 0.11	
m : 0.59	o : 0.17	n : 0.11	l : 0.11	
m : 0.59	o : 0.17	n : 0.11	e : 0.07	l : 0.03	
e : 0.36	d : 0.17	o : 0.13	g : 0.09	c : 0.07	n : 0.05	= : 0.03	f : 0.03	a : 0.01	
e : 0.44	d : 0.24	g : 0.09	c : 0.07	= : 0.03	f : 0.03	o : 0.03	] : 0.01	
e : 0.48	d : 0.24	c : 0.09	g : 0.09	= : 0.03	f : 0.03	
e : 0.48	d : 0.24	g : 0.09	= : 0.07	f : 0.03	4 : 0.01	c : 0.01	] : 0.01	
e : 0.40	d : 0.11	] : 0.09	g : 0.09	= : 0.07	f : 0.07	2 : 0.05	4 : 0.01	c : 0.01	3 : 0.01	b : 0.01	
g : 0.17	2 : 0.17	f : 0.11	e : 0.11	] : 0.11	= : 0.07	3 : 0.07	4 : 0.05	d : 0.03	b : 0.03	a : 0.01	
g : 0.17	2 : 0.15	f : 0.09	3 : 0.09	4 : 0.07	= : 0.07	d : 0.07	c : 0.05	a : 0.05	b : 0.05	] : 0.03	e : 0.03	
f : 0.13	2 : 0.13	g : 0.11	d : 0.11	e : 0.09	= : 0.07	3 : 0.07	c : 0.05	4 : 0.05	b : 0.05	a : 0.05	] : 0.01	
f : 0.19	] : 0.13	g : 0.11	2 : 0.09	d : 0.09	c : 0.09	e : 0.09	= : 0.07	4 : 0.05	3 : 0.01	b : 0.01	
f : 0.26	d : 0.17	g : 0.13	c : 0.11	e : 0.09	= : 0.07	2 : 0.05	b : 0.03	4 : 0.01	3 : 0.01	
f : 0.24	g : 0.13	d : 0.13	c : 0.11	b : 0.09	e : 0.09	= : 0.05	2 : 0.05	] : 0.01	: : 0.01	3 : 0.01	

#score	528.8453035680423
#seq	52
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_UTR_m2_run1.txt

#BEAR
!!ggggggg[bbssssssssssbbggggggg2	chr11:64569439-64569703(-)$1	264	48	80	17.8157
hha[a[ddddvvvvvvvvvvvvvdddd]a]a]	chr2:97285092-97285398(-)$1	306	139	171	23.4485
hhhhggggggguuuuuuuuuuuuggggggg::	chr11:62651997-62652269(+)$1	272	50	82	22.0211
============ssssssssss==========	chr14:73574461-73574708(+)$1	247	185	217	18.9131
eeeee[bbccctttttttttttccc]bb333e	chr17:73238421-73238671(-)$1	250	116	148	22.9054
=======[bbuuuuuuuuuuuubb========	chr17:79526278-79526583(-)$1	305	39	71	24.9716
ccc[ffffffwwwwwwwwwwwwwwffffff]c	chr3:184033410-184033683(+)$1	273	115	147	21.7099
eee"""eeeeettttttttttteeeee333ee	chr11:9168547-9168836(-)$1	289	143	175	24.0478
dccc"""ddddtttttttttttdddd333ccc	chr12:122237638-122237890(-)$1	252	4	36	24.5851
))))eeeeevvvvvvvvvvvvveeeee22ccc	chr2:70143134-70143400(+)$1	266	75	107	20.4700
gggggggddddtttttttttttdddd22gggg	chr19:59068032-59068258(-)$1	226	71	103	24.2405
iiii"""ddddtttttttttttdddd333iii	chr1:70716460-70716702(+)$1	242	43	75	25.1246
ddiiiiiiiiitttttttttttiiiiiiiii]	chr9:139992139-139992404(+)$1	265	120	152	24.9183
bb!!gggggggtttttttttttggggggg22b	chr5:38953498-38953762(-)$1	264	217	249	23.3560
c[==========ssssssssss==========	chr12:69135492-69135703(+)$1	211	160	192	18.9339
hhhhhhh[bbuuuuuuuuuuuubb]hhhhhhh	chr6:29574082-29574329(-)$1	247	14	46	21.5912
hhhhccc[bbxxxxxxxxxxxxxxxbb]ccc]	chr11:65055085-65055329(+)$1	244	154	186	16.6769
d!!a####ddddssssssssssdddd333a22	chr2:65301256-65301558(+)$1	302	250	282	18.0316
ffffff[bbvvvvvvvvvvvvvbb]ffffff:	chr20:61438743-61439044(+)$1	301	8	40	20.4230
cciiiiiiiiitttttttttttiiiiiiiii]	chr16:68088309-68088627(+)$1	318	19	51	25.0962
fffff[ddddtttttttttttddddffffff:	chr16:14687027-14687300(-)$1	273	1	33	20.3438
ccc"""eeeeevvvvvvvvvvvvveeeee333	chr11:65767672-65767970(-)$1	298	113	145	23.3153
[a[ffffffbbtttttttttttbb22ffffff	chr16:22326307-22326541(+)$1	234	158	190	21.7710
hhhhhhh!!bbtttttttttttbb]hhhhhhh	chr3:50098914-50099162(+)$1	248	41	73	21.5759
c[dddd[ddddtttttttttttdddd333ddd	chr2:100055536-100055802(-)$1	266	148	180	23.5069
ddd:::eeeeettttttttttteeeeefffff	chr15:80450288-80450614(+)$1	326	35	67	20.0146
===========uuuuuuuuuuuu=========	chr1:38155345-38155663(-)$1	318	80	112	25.4765
dddd!!eeeeevvvvvvvvvvvvveeeee555	chr2:97007694-97007937(+)$1	243	135	167	20.3564
ggggggg[ccctttttttttttccc]gggggg	chr5:38942340-38942596(-)$1	256	66	98	24.7199
!==========ssssssssss==========4	chr22:39925749-39926056(-)$1	307	46	78	18.9442
gggg[bb[bbuuuuuuuuuuuubbbb]ggggg	chr16:720913-721201(+)$1	288	135	167	23.0283
ffffffyyyyyyyyyyyyyyyyffffff:ddd	chr16:4458080-4458327(-)$1	247	205	237	18.1565
fff[ggggggguuuuuuuuuuuuggggggg]f	chr17:73845670-73845918(-)$1	248	133	165	23.9965
d!!bb!!dddduuuuuuuuuuuuddddbb22d	chr17:61864293-61864522(+)$1	229	150	182	22.7279
gggg[ccc!!avvvvvvvvvvvvva22ccc]g	chr3:195785392-195785604(-)$1	212	112	144	22.7286
cc[a!!eeeeesssssssssseeeeea]ccc2	chr16:88945705-88946004(-)$1	299	255	287	18.0997
b[gggggggvvvvvvvvvvvvvgggggggbb2	chr7:16729320-16729539(+)$1	219	141	173	22.7115
edddd"""cccxxxxxxxxxxxxxxxccc333	chr8:30034536-30034816(+)$1	280	95	127	16.9700
ddddeeeeevvvvvvvvvvvvveeeee]dddd	chr4:2935717-2935946(-)$1	229	162	194	21.9517
ddd[bb[ddddtttttttttttddddbb]ddd	chr17:80443424-80443630(+)$1	206	36	68	22.6092
iiiiiiiiwwwwwwwwwwwwwwiiiiiiiii]	chr17:54973168-54973421(-)$1	253	74	106	23.5064
dddddddddddtttttttttttdddd]dddd]	chr1:19440028-19440253(-)$1	225	31	63	22.5317
#cccggggggguuuuuuuuuuuuggggggg55	chr19:19414078-19414391(-)$1	313	131	163	22.8451
fff[cccdddduuuuuuuuuuuudddd]cccf	chr4:83345926-83346150(-)$1	224	42	74	23.5410
dddd####bbyyyyyyyyyyyyyyyybb4444	chr3:119155687-119155970(-)$1	283	208	240	20.7217
ccc[ddddxxxxxxxxxxxxxxxdddd]cccd	chr10:28822744-28823002(+)$1	258	101	133	17.1792
'''eeeeewwwwwwwwwwwwwweeeee]iiii	chr16:67778220-67778471(-)$1	251	51	83	20.5608
"bb[eeeeevvvvvvvvvvvvveeeee]bb33	chr1:193020794-193021047(-)$1	253	35	67	22.5511

#otherMatches

#Seq PSSM
UAGCCUGGGAGGGUGGGCAUGACCCCCGGGCC	chr11:64569439-64569703(-)$1	264	48	80	17.8157
GCCGUGUUGCUGUGGACAAGUGUGCAAGGAGA	chr2:97285092-97285398(-)$1	306	139	171	23.4485
CUCAGCUAGAGCCUCAUAAUAUUCUCUGGUCC	chr11:62651997-62652269(+)$1	272	50	82	22.0211
UAUUAGCUGUGUUUUUCCAUCUGCACAGUUGA	chr14:73574461-73574708(+)$1	247	185	217	18.9131
GGACGAGGCACGGAUCCAGAAGGUGACCAAGC	chr17:73238421-73238671(-)$1	250	116	148	22.9054
GGCGGGGAGCUCUCAGCUGCCUGCCCCUGCCC	chr17:79526278-79526583(-)$1	305	39	71	24.9716
CCUGAGCGCCACUCUUUCCCAACAGGUGCUGG	chr3:184033410-184033683(+)$1	273	115	147	21.7099
UAUAUAAGCGCUAUGCCUUCCUGCGCUGUGAU	chr11:9168547-9168836(-)$1	289	143	175	24.0478
GCCCUCCACCUUCCUCUCCUCCAGGUUCUGGG	chr12:122237638-122237890(-)$1	252	4	36	24.5851
AUAUUCUGGGCCCAUUCAUUAACUGGAUCCUC	chr2:70143134-70143400(+)$1	266	75	107	20.4700
CCCAUCUCUCUUUUCUUUUCCUGGAGCCAGGU	chr19:59068032-59068258(-)$1	226	71	103	24.2405
GAGUCCAACUGUAUACCUGCAUCAGUGUCAUU	chr1:70716460-70716702(+)$1	242	43	75	25.1246
CCCUUCCUUCUCCCCCGAAGCUGGAGGGGAGC	chr9:139992139-139992404(+)$1	265	120	152	24.9183
CUGUAAGAUCUUCGCAAUUUUUAGAUUUUUAA	chr5:38953498-38953762(-)$1	264	217	249	23.3560
CCAAUGUUGUGUUUUCUGCUUCAUACGAUAUU	chr12:69135492-69135703(+)$1	211	160	192	18.9339
GGAGAGGAGGGGAGGCUGGCAACCAUCUUUCU	chr6:29574082-29574329(-)$1	247	14	46	21.5912
AGCAUCACGUAUGACCCCCUGCUUGACCUGAU	chr11:65055085-65055329(+)$1	244	154	186	16.6769
CAAGUCUCAAGUCUUCUCUGCAGCUUUACCGG	chr2:65301256-65301558(+)$1	302	250	282	18.0316
AGAGGGAGGAGCCAUGAAACCCCCGCCCUUUA	chr20:61438743-61439044(+)$1	301	8	40	20.4230
GUGGGCUGGCUGUUUAAGAGAAAGCCAGCCUG	chr16:68088309-68088627(+)$1	318	19	51	25.0962
CAUUCUGAAACCCCAGUAUAAUUUCGAAUGUA	chr16:14687027-14687300(-)$1	273	1	33	20.3438
UCUCAGGCCACCAAGAGGAAGCAUGUGGUGAA	chr11:65767672-65767970(-)$1	298	113	145	23.3153
UGAGUUCCUGCAGAAGAAGCACGCAGAGGAGC	chr16:22326307-22326541(+)$1	234	158	190	21.7710
AACUUAUUAUGACCCCAAUACCCAGGUGAGUU	chr3:50098914-50099162(+)$1	248	41	73	21.5759
CCGGGAAGGAAACAGAAUGGAAUUCCGCAUCC	chr2:100055536-100055802(-)$1	266	148	180	23.5069
UAGAUAGGCUUUCUGAGUAAAUGAGCCAAGCC	chr15:80450288-80450614(+)$1	326	35	67	20.0146
UAUUUUCUGUUUUUAUCUUUUUCAGCAGAAGA	chr1:38155345-38155663(-)$1	318	80	112	25.4765
GCAGAUUACGGAACAUUACUCCACCUGUAUCA	chr2:97007694-97007937(+)$1	243	135	167	20.3564
UAUCAUCUGUUUUUAUAAAAGUAAUUGAUGAU	chr5:38942340-38942596(-)$1	256	66	98	24.7199
AGGUCUUUGGCAGGGCCAUGGGCCAGGGACUG	chr22:39925749-39926056(-)$1	307	46	78	18.9442
UGCCUGGUGCUCCCCCUGCUUUGUCUCGGUGC	chr16:720913-721201(+)$1	288	135	167	23.0283
GAGCCCCAGCGCCAUCCCCACAGGGCUCUGCU	chr16:4458080-4458327(-)$1	247	205	237	18.1565
GUCCUUCAUGAUGCCAUUUUAUCUCAUGAAAG	chr17:73845670-73845918(-)$1	248	133	165	23.9965
GAGGAUUUGGCUUUGGAGGUUUUGCCAUCAGU	chr17:61864293-61864522(+)$1	229	150	182	22.7279
GGUUACUGGGCAAUUUCUAUAUCAGGACAGCA	chr3:195785392-195785604(-)$1	212	112	144	22.7286
CUGGCCGAGGCGAAGCGGCAGGCCUCCGAGGA	chr16:88945705-88946004(-)$1	299	255	287	18.0997
GAUGGCAGAAAAAGAUGCCAACUCUGUUACCU	chr7:16729320-16729539(+)$1	219	141	173	22.7115
CUGUUUACAGUUACCCAGAUAAUAUCACUCCU	chr8:30034536-30034816(+)$1	280	95	127	16.9700
GAGCCCCUGCCAUCAGCCCCUUUAGGGUGCUC	chr4:2935717-2935946(-)$1	229	162	194	21.9517
AACAUGAUCCUGAAGCUUAAGAAGGGCAAGUU	chr17:80443424-80443630(+)$1	206	36	68	22.6092
AAAAGAAAUUAAAUCUGAAAACUUUCUUUUGC	chr17:54973168-54973421(-)$1	253	74	106	23.5064
UCUUUUGAUGAACUCUCCAAAAUCAUCCAGGU	chr1:19440028-19440253(-)$1	225	31	63	22.5317
CAGAUUUUUGCACGAUAAGAAUAGCAGGGAAU	chr19:19414078-19414391(-)$1	313	131	163	22.8451
UUCAUGAAAGUGGACCUUUAAAAGCUUGUCAG	chr4:83345926-83346150(-)$1	224	42	74	23.5410
UUUGUCAUGCUCACCACGCAACUGUUGCCAUC	chr3:119155687-119155970(-)$1	283	208	240	20.7217
ggcgggggccccgUUUUCUUCCUCCCCGGCCC	chr10:28822744-28823002(+)$1	258	101	133	17.1792
GUGACUUGUCUUGUUCCUCCCUCAAGUACCUA	chr16:67778220-67778471(-)$1	251	51	83	20.5608
UUAUUUCAUGUUGAAGGAAAAAAUGAAUUAUC	chr1:193020794-193021047(-)$1	253	35	67	22.5511

#DB
..(((((((.((..........))))))))).	chr11:64569439-64569703(-)$1	1	48	80	17.8157
(((.(.((((.............)))).).).	chr2:97285092-97285398(-)$1	1	139	171	23.4485
))))(((((((............)))))))..	chr11:62651997-62652269(+)$1	1	50	82	22.0211
((((((((((((..........))))))))))	chr14:73574461-73574708(+)$1	1	185	217	18.9131
(((((.(((((...........))).))...)	chr17:73238421-73238671(-)$1	1	116	148	22.9054
(((((((.((............))))))))))	chr17:79526278-79526583(-)$1	1	39	71	24.9716
(((.((((((..............)))))).)	chr3:184033410-184033683(+)$1	1	115	147	21.7099
(((...(((((...........)))))...))	chr11:9168547-9168836(-)$1	1	143	175	24.0478
((((...((((...........))))...)))	chr12:122237638-122237890(-)$1	1	4	36	24.5851
....(((((.............)))))..)))	chr2:70143134-70143400(+)$1	1	75	107	20.4700
(((((((((((...........))))..))))	chr19:59068032-59068258(-)$1	1	71	103	24.2405
((((...((((...........))))...)))	chr1:70716460-70716702(+)$1	1	43	75	25.1246
(((((((((((...........))))))))).	chr9:139992139-139992404(+)$1	1	120	152	24.9183
((..(((((((...........)))))))..)	chr5:38953498-38953762(-)$1	1	217	249	23.3560
(.((((((((((..........))))))))))	chr12:69135492-69135703(+)$1	1	160	192	18.9339
(((((((.((............)).)))))))	chr6:29574082-29574329(-)$1	1	14	46	21.5912
(((((((.((...............)).))).	chr11:65055085-65055329(+)$1	1	154	186	16.6769
(..(....((((..........))))...)..	chr2:65301256-65301558(+)$1	1	250	282	18.0316
((((((.((.............)).)))))).	chr20:61438743-61439044(+)$1	1	8	40	20.4230
(((((((((((...........))))))))).	chr16:68088309-68088627(+)$1	1	19	51	25.0962
(((((.((((...........)))))))))).	chr16:14687027-14687300(-)$1	1	1	33	20.3438
(((...(((((.............)))))...	chr11:65767672-65767970(-)$1	1	113	145	23.3153
.(.((((((((...........))..))))))	chr16:22326307-22326541(+)$1	1	158	190	21.7710
(((((((..((...........)).)))))))	chr3:50098914-50099162(+)$1	1	41	73	21.5759
(.((((.((((...........))))...)))	chr2:100055536-100055802(-)$1	1	148	180	23.5069
)))...(((((...........)))))(((((	chr15:80450288-80450614(+)$1	1	35	67	20.0146
(((((((((((............)))))))))	chr1:38155345-38155663(-)$1	1	80	112	25.4765
((((..(((((.............)))))...	chr2:97007694-97007937(+)$1	1	135	167	20.3564
(((((((.(((...........))).))))))	chr5:38942340-38942596(-)$1	1	66	98	24.7199
.((((((((((..........)))))))))).	chr22:39925749-39926056(-)$1	1	46	78	18.9442
((((.((.((............)))).)))))	chr16:720913-721201(+)$1	1	135	167	23.0283
((((((................)))))).(((	chr16:4458080-4458327(-)$1	1	205	237	18.1565
(((.(((((((............))))))).)	chr17:73845670-73845918(-)$1	1	133	165	23.9965
(..((..((((............))))))..)	chr17:61864293-61864522(+)$1	1	150	182	22.7279
((((.(((..(.............)..))).)	chr3:195785392-195785604(-)$1	1	112	144	22.7286
((.(..(((((..........)))))).))).	chr16:88945705-88946004(-)$1	1	255	287	18.0997
(.(((((((.............))))))))).	chr7:16729320-16729539(+)$1	1	141	173	22.7115
(((((...(((...............)))...	chr8:30034536-30034816(+)$1	1	95	127	16.9700
(((((((((.............))))).))))	chr4:2935717-2935946(-)$1	1	162	194	21.9517
(((.((.((((...........)))))).)))	chr17:80443424-80443630(+)$1	1	36	68	22.6092
((((((((..............))))))))).	chr17:54973168-54973421(-)$1	1	74	106	23.5064
(((((((((((...........)))).)))).	chr1:19440028-19440253(-)$1	1	31	63	22.5317
.((((((((((............)))))))..	chr19:19414078-19414391(-)$1	1	131	163	22.8451
(((.(((((((............)))).))))	chr4:83345926-83346150(-)$1	1	42	74	23.5410
((((....((................))....	chr3:119155687-119155970(-)$1	1	208	240	20.7217
(((.((((...............)))).))))	chr10:28822744-28823002(+)$1	1	101	133	17.1792
...(((((..............))))).))))	chr16:67778220-67778471(-)$1	1	51	83	20.5608
.((.(((((.............))))).))..	chr1:193020794-193021047(-)$1	1	35	67	22.5511

#PSSM
d : 0.20	c : 0.14	h : 0.10	f : 0.10	g : 0.08	= : 0.06	e : 0.06	! : 0.04	i : 0.04	b : 0.04	) : 0.02	[ : 0.02	# : 0.02	' : 0.02	" : 0.02	
d : 0.16	c : 0.14	h : 0.10	f : 0.10	= : 0.08	g : 0.08	! : 0.06	[ : 0.06	e : 0.04	i : 0.04	b : 0.04	) : 0.02	a : 0.02	' : 0.02	
d : 0.16	g : 0.12	= : 0.10	c : 0.10	f : 0.10	h : 0.08	i : 0.08	! : 0.06	e : 0.04	[ : 0.04	a : 0.02	) : 0.02	' : 0.02	b : 0.02	
[ : 0.14	g : 0.12	d : 0.12	= : 0.10	h : 0.08	i : 0.08	f : 0.08	e : 0.04	" : 0.04	c : 0.04	a : 0.04	) : 0.02	! : 0.02	: : 0.02	b : 0.02	
g : 0.16	= : 0.10	e : 0.10	f : 0.10	" : 0.08	d : 0.08	i : 0.06	h : 0.04	c : 0.04	# : 0.04	! : 0.04	[ : 0.04	b : 0.04	a : 0.02	: : 0.02	
g : 0.16	= : 0.10	" : 0.10	f : 0.08	e : 0.08	[ : 0.06	i : 0.06	c : 0.06	d : 0.06	! : 0.06	h : 0.04	# : 0.04	b : 0.04	: : 0.02	
e : 0.18	g : 0.16	= : 0.10	d : 0.08	" : 0.06	i : 0.06	c : 0.06	[ : 0.06	b : 0.04	f : 0.04	h : 0.04	# : 0.04	y : 0.02	! : 0.02	
d : 0.22	e : 0.18	g : 0.12	[ : 0.10	= : 0.08	i : 0.06	b : 0.04	f : 0.04	# : 0.04	! : 0.02	y : 0.02	c : 0.02	" : 0.02	
d : 0.22	e : 0.16	g : 0.12	b : 0.12	= : 0.08	c : 0.06	f : 0.04	i : 0.04	! : 0.04	w : 0.04	y : 0.02	x : 0.02	
d : 0.22	b : 0.14	e : 0.10	v : 0.10	g : 0.08	= : 0.08	c : 0.06	i : 0.04	w : 0.04	[ : 0.02	f : 0.02	y : 0.02	! : 0.02	x : 0.02	
d : 0.18	v : 0.12	e : 0.10	g : 0.08	= : 0.08	b : 0.06	c : 0.06	u : 0.06	w : 0.06	i : 0.04	x : 0.04	y : 0.04	t : 0.02	a : 0.02	
t : 0.33	v : 0.18	u : 0.18	w : 0.06	x : 0.06	= : 0.04	s : 0.04	y : 0.04	b : 0.02	d : 0.02	
t : 0.33	v : 0.18	u : 0.18	s : 0.12	w : 0.06	x : 0.06	y : 0.04	
t : 0.33	v : 0.18	u : 0.18	s : 0.12	w : 0.06	x : 0.06	y : 0.04	
t : 0.33	v : 0.18	u : 0.18	s : 0.12	w : 0.06	x : 0.06	y : 0.04	
t : 0.33	v : 0.18	u : 0.18	s : 0.12	w : 0.06	x : 0.06	y : 0.04	
t : 0.33	v : 0.18	u : 0.18	s : 0.12	w : 0.06	x : 0.06	y : 0.04	
t : 0.33	v : 0.18	u : 0.18	s : 0.12	w : 0.06	x : 0.06	y : 0.04	
t : 0.33	v : 0.18	u : 0.18	s : 0.12	w : 0.06	x : 0.06	y : 0.04	
t : 0.33	v : 0.18	u : 0.18	s : 0.12	w : 0.06	x : 0.06	y : 0.04	
t : 0.33	v : 0.18	u : 0.18	s : 0.12	w : 0.06	x : 0.06	y : 0.04	
t : 0.31	v : 0.18	u : 0.18	s : 0.08	w : 0.06	x : 0.06	y : 0.04	d : 0.02	= : 0.02	e : 0.02	
d : 0.16	b : 0.14	e : 0.14	u : 0.12	v : 0.08	= : 0.06	i : 0.06	x : 0.06	c : 0.04	g : 0.04	w : 0.02	f : 0.02	y : 0.02	
d : 0.25	b : 0.14	e : 0.14	g : 0.10	= : 0.08	i : 0.06	v : 0.06	c : 0.04	x : 0.04	w : 0.02	f : 0.02	y : 0.02	
d : 0.25	e : 0.18	g : 0.12	= : 0.10	i : 0.06	] : 0.06	c : 0.04	f : 0.04	x : 0.04	2 : 0.02	b : 0.02	a : 0.02	y : 0.02	
d : 0.22	e : 0.18	g : 0.12	= : 0.10	f : 0.08	i : 0.06	] : 0.04	h : 0.04	b : 0.04	2 : 0.04	x : 0.02	y : 0.02	
e : 0.16	g : 0.14	= : 0.10	f : 0.10	d : 0.08	b : 0.08	3 : 0.08	i : 0.06	2 : 0.04	h : 0.04	] : 0.04	a : 0.02	c : 0.02	
g : 0.16	] : 0.16	f : 0.12	= : 0.10	3 : 0.10	b : 0.08	i : 0.06	2 : 0.04	h : 0.04	e : 0.04	c : 0.04	d : 0.02	
g : 0.18	3 : 0.12	c : 0.12	= : 0.10	f : 0.10	i : 0.08	h : 0.04	e : 0.04	b : 0.04	d : 0.04	a : 0.02	2 : 0.02	: : 0.02	] : 0.02	4 : 0.02	
g : 0.14	c : 0.14	= : 0.10	f : 0.10	i : 0.10	d : 0.10	3 : 0.08	2 : 0.04	h : 0.04	b : 0.04	] : 0.02	a : 0.02	5 : 0.02	4 : 0.02	
c : 0.12	= : 0.10	i : 0.10	d : 0.10	g : 0.08	3 : 0.08	f : 0.08	] : 0.06	2 : 0.06	h : 0.04	5 : 0.04	a : 0.02	: : 0.02	e : 0.02	b : 0.02	4 : 0.02	
] : 0.12	d : 0.12	2 : 0.08	= : 0.08	g : 0.08	f : 0.08	: : 0.06	c : 0.06	3 : 0.06	e : 0.04	i : 0.04	h : 0.04	5 : 0.04	4 : 0.04	b : 0.02	

#score	1045.724283813464
#seq	48
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_transcript_m1_run1.txt

#BEAR
=========[ccc[bboooooobb]ccc============	chr2:162017046-162017308(+)$1	262	104	144	15.9785
iiiiiii!!hhhhhhhhoooooohhhhhhhh]iiiiiiii	chr11:61188613-61188873(-)$1	260	127	167	14.3485
cffffff[dddd"""cccnnnnncccdddd4444ffffff	chr20:62338964-62339253(-)$1	289	178	218	12.7828
ffff[bbcccbbccccccnnnnnccc]ccc333bb]ccc]	chr17:79971453-79971685(+)$1	232	58	98	13.2437
bb!!dddd!!ccc[cccnnnnnccc]ccc22dddd22bb]	chr11:64533799-64534069(-)$1	270	46	86	12.1897
ggggggg[bb[eeeeennnnneeeee]bb333ggggggg:	chr8:23003020-23003316(-)$1	296	153	193	11.5267
!a!!ccc!!dddd[cccoooooocccdddd]ccc22abbf	chr9:139836316-139836558(-)$1	242	139	179	15.2849
""ffffff!!ccc!!bboooooobb22ccc]ffffff333	chr20:31606884-31607130(+)$1	246	110	150	14.2581
[accc[ccc####bb[cccmmmmccc]bb22ccc]ccc]a	chr3:52514324-52514606(+)$1	282	156	196	12.4569
ccc"""ccc!!bb[ddddmmmmddddbb22ccc333ccc]	chr11:65391413-65391698(+)$1	285	87	127	12.4626
hhhhhhh[ccccccddddoooooodddd]ccc22ccc]hh	chr19:51307560-51307852(-)$1	292	7	47	13.2316
ccc!!============lll============333ccc::	chr15:65845321-65845549(-)$1	228	185	225	13.7723
fff!!dddd!!bb[cccooooooccc]bbdddd22fffff	chr19:1273501-1273721(+)$1	220	30	70	14.9078
""dddd[ccc[a[bbbbnnnnnbb333bb]a]cccdddd]	chr16:30764543-30764854(+)$1	311	119	159	11.8382
hhhhhhh[dddd[a[ccclllccc]a]dddd333hhhhhh	chr2:178128948-178129234(-)$1	286	199	239	12.1641
ccc[ccc[cccbb[ddddnnnnnddddbb]ccc]ccc]cc	chr11:62592476-62592761(-)$1	285	183	223	13.7121
gg[ccc"""bb[a[cccooooooccc]a]bb4444ccc]g	chr1:155885470-155885704(-)$1	234	156	196	16.9723
iiiiiiii[bb[addddnnnnndddd22a]bb]iiiiiii	chr10:104489569-104489837(+)$1	268	103	143	12.7451
ccc:ggggggg"""cccooooooccc4444ggggggg:ee	chr22:50873416-50873650(+)$1	234	147	187	14.6152
cdddd"""ccc[eeeeeooooooeeeeecccdddd333cc	chr17:7081558-7081824(-)$1	266	3	43	13.9822
ggggggdddd####cccooooooccc333dddd:hhhhhh	chr1:28905887-28906116(-)$1	229	86	126	14.1608
ffff==========cccooooooccc22==========:=	chr10:119133656-119133967(-)$1	311	204	244	16.2203
c"""ccc"""dddd[aooooooa]dddd22ccc22ccc]b	chr19:39926255-39926506(-)$1	251	82	122	14.4258
gggggggccc!!eeeeemmmmeeeee22ccc333gggggg	chr12:125347927-125348184(-)$1	257	180	220	12.5738
gggg!!ccc[gggggggnnnnnggggggg]cccggggggg	chr11:47193650-47193911(-)$1	261	108	148	14.3828
iiiiiii[bb[iiiiiiiiillliiiiiiiii333bbiii	chr11:122932308-122932639(-)$1	331	229	269	13.4607
eeeeeaeeeee[cccbboooooobb]ccc22eeeee]a]e	chr2:88427250-88427493(-)$1	243	76	116	13.1125
ccdddd[bb[ccc[cccooooooccc]ccc22bb]dddd]	chr20:61594246-61594532(+)$1	286	203	243	14.6761
fffff"""cccggggggglllggggggg333ccc333fff	chr19:48638727-48638994(-)$1	267	165	205	13.1627
gggg####ccc"""eeeeellleeeeeccc4444gggggg	chr17:73775465-73775731(-)$1	266	17	57	13.9872
&&dddd!!eeeee[cccooooooccceeeeedddda]===	chr16:50100156-50100444(+)$1	288	199	239	12.8229
ggggggg[cccbb[cccooooooccc]bb]ccc]gggggg	chr1:2341822-2342098(-)$1	276	195	235	18.2029
dd!!eeeeeccc[ddddooooooddddccc333eeeee]d	chr7:150038499-150038755(-)$1	256	43	83	14.1932
b!!gggggggbbbb[aooooooa]bb]bb]ggggggg333	chr16:30094575-30094816(+)$1	241	194	234	14.7028
=[ccc!!ccc[bb!!bboooooobb22bb]ccc333ccc]	chr17:74732445-74732669(-)$1	224	70	110	16.9127
iiiiiiiii"""eeeeeooooooeeeee4444iiiiiiii	chr21:45739488-45739762(+)$1	274	147	187	16.2507
!!dddd[eeeee"""bboooooobbeeeee333dddd22e	chr10:102729592-102729930(+)$1	338	185	225	13.4507
ggggggg[ffffff[aooooooa]ffffff22ggggggge	chr11:62572486-62572799(-)$1	313	95	135	14.0548
dd[ggggggg[bbddddnnnnndddd]bb]ggggggg]dd	chr20:32246781-32247020(-)$1	239	96	136	12.5982
ggggg[ccc!!bb"""ccclllccc22bb]cccggggggg	chr6:33257955-33258226(+)$1	271	194	234	14.4289
ccc[a[a!!dddd[cccmmmmcccdddda]a]ccc22fff	chr11:72533726-72534034(+)$1	308	18	58	12.1125
eee[ccc==========lll==========4444ccc]ee	chr17:75493403-75493681(+)$1	278	56	96	14.7721
b[eeeee[ccc"""ccclllccc4444ccceeeee]bb]e	chr16:2136744-2137082(+)$1	338	142	182	11.8491
ggg"""ggggggg!!cccnnnnnccc]ggggggggggggg	chr21:47565486-47565743(-)$1	257	142	182	14.7140
e!!eeeeedddd[bb[aooooooabb]dddd4444eeeee	chr14:89029476-89029724(+)$1	248	79	119	13.2925
c[iiiiiiiii[ccc[bbrrrrrrrrrbb]ccciiiiiii	chr8:145004118-145004385(-)$1	267	23	63	12.1904
===[bb####gggggggooooooggggggg4444bb333=	chr10:106014763-106015058(+)$1	295	94	134	15.6994
[dddd"""eeeee[ccclllccc]eeeee]dddd]ccc]d	chr20:62284298-62284616(-)$1	318	75	115	11.5475
ee"""a[==========oooooo==========]a]eeee	chr3:48638183-48638457(-)$1	274	11	51	16.3443
eeeeccc"""ccc!!eeeeellleeeee22ccc333ccc2	chr16:66976081-66976358(+)$1	277	100	140	12.2091
gggggggccc[ccc[bboooooobb]ccc]ccc]gggggg	chr11:72406576-72406799(-)$1	223	64	104	16.6763
hhhh[cccdddd!!cccooooooccc]dddd4444ccc33	chr20:60583886-60584150(-)$1	264	17	57	16.2982
[ffffff[cccccc[ddddlllddddccc]ccc]ffffff	chr17:37009705-37009953(-)$1	248	21	61	12.2152
b[ggggggg[ccc[cccooooooccccccgggggggbb::	chr11:65746108-65746380(+)$1	272	110	150	14.3904
eeeccc[ccc[ffffffooooooffffff4444cccccc]	chr9:97767496-97767730(+)$1	234	176	216	14.8342

#otherMatches

#Seq PSSM
GAGGGAUUUUGUGCGGGAGAAACCACGCGAGUCCUUCCCC	chr2:162017046-162017308(+)$1	262	104	144	15.9785
CUUUUUCCUGGGAUCAGGUUGGAUUGAUCUCUGAAAGAGA	chr11:61188613-61188873(-)$1	260	127	167	14.3485
CGGGGGCCGCGACCCAGGUUCUUCCUUCGCAGUCGUUCCC	chr20:62338964-62339253(-)$1	289	178	218	12.7828
GGCCGGCCCCCGGCUUCCGAGAGGGACAGCGUGCGUGGGU	chr17:79971453-79971685(+)$1	232	58	98	13.2437
AGGGCUGCGAUUGGGGUGAGAGACUGCAGAGGUGGGACUG	chr11:64533799-64534069(-)$1	270	46	86	12.1897
GUGGGAGCGCUGGGCACUGUCUGCCCUGCCCUCUCCCACU	chr8:23003020-23003316(-)$1	296	153	193	11.5267
AGCAAGCAAGUCCACAGGCAAAGCUGGGAUCGUUCACUCG	chr9:139836316-139836558(-)$1	242	139	179	15.2849
UCUGCUGGCUCUUAUCUGUCCCAAGUGAAGUUCAGCAUCU	chr20:31606884-31607130(+)$1	246	110	150	14.2581
UGCCUGGCCUGAUGCCAGCUGUUGCUUGCUUGGUGAGGAC	chr3:52514324-52514606(+)$1	282	156	196	12.4569
GGGUAGGGUAUGGAGGGCUGGGGCUCCCUCACCACCCCCA	chr11:65391413-65391698(+)$1	285	87	127	12.4626
GAGAGAGAAAUGCUGGGGUGAGGUUCUUAAGUUUAUUACU	chr19:51307560-51307852(-)$1	292	7	47	13.2316
gaugaguucauguccuuuguagggacauggaugaaauugg	chr15:65845321-65845549(-)$1	228	185	225	13.7723
GACCUCAGACGGCCAGCCGGUUAGCUAGUUCUGCUGUUGC	chr19:1273501-1273721(+)$1	220	30	70	14.9078
CAGGGCAGGGAGGAGCCGAGGAGGAGACUGCACCCGCCUC	chr16:30764543-30764854(+)$1	311	119	159	11.8382
GGGUGGGAAGUUGCGGGAAGGUCUGGGGACUGAGCCCGCU	chr2:178128948-178129234(-)$1	286	199	239	12.1641
GCAGAGGAGCCGGAGAGAGCAGUUCUCCCGGGCACCUGUG	chr11:62592476-62592761(-)$1	285	183	223	13.7121
aggugggcagaucaccuaaggucaggaguucaagaccagc	chr1:155885470-155885704(-)$1	234	156	196	16.9723
GCUGCUGGGCUGAGCCUCUGAAGGGCCCUGGGAUUGGCAG	chr10:104489569-104489837(+)$1	268	103	143	12.7451
AGGAGCUGCCGCCUGAGACUAAGCUCUGCCCGGCAGCAGG	chr22:50873416-50873650(+)$1	234	147	187	14.6152
UCAGAAAAGGUGAGGGCCACCUUGCCCUGCCUCUGCAAGG	chr17:7081558-7081824(-)$1	266	3	43	13.9822
ACCCAAAGCUUUGUCACAACUUGGUGUGUAGCUGCAGGUA	chr1:28905887-28906116(-)$1	229	86	126	14.1608
UGCUUCUGGGGCCUUCCCACCCUGGACAGGGCCCCAGAUC	chr10:119133656-119133967(-)$1	311	204	244	16.2203
UGGGCAGGAAUCUAGGGGGUAACAUGGGAGCUGGAGCCGG	chr19:39926255-39926506(-)$1	251	82	122	14.4258
GGGAGGCCAGGCGCUUCGGGAGGGGCUGCUGCCCGCCUCC	chr12:125347927-125348184(-)$1	257	180	220	12.5738
ggguuaggagcugggugcaggcuaccuggguucacuccuu	chr11:47193650-47193911(-)$1	261	108	148	14.3828
CUGUUCUUGGCGUGCUUCCAGUAUGGGGGUACAUUCCGGA	chr11:122932308-122932639(-)$1	331	229	269	13.4607
CUCUACCAGCAGUGGCUAUUUAGGGUCCAAAUGUUGAGAU	chr2:88427250-88427493(-)$1	243	76	116	13.1125
CUGCCUGUUAGGUGUCUGGUAGGGGAGGCCAAGGGAGGCU	chr20:61594246-61594532(+)$1	286	203	243	14.6761
AUCACGAGUGCCGGUCACGGGGUGACUGAGAGCAGAGGUG	chr19:48638727-48638994(-)$1	267	165	205	13.1627
CGGCUUCAGGUUCUGCCAACCGUUGGCGCCGCGCGCCGCG	chr17:73775465-73775731(-)$1	266	17	57	13.9872
CCGGGCCUGGCGCGACGAGACGCCGUGCGCCGCCUCGGGC	chr16:50100156-50100444(+)$1	288	199	239	12.8229
UUUCUCCUCUCAGGUGCGAGGAAGUGGCUGGAGUGGAGGA	chr1:2341822-2342098(-)$1	276	195	235	18.2029
UCAGCUGCGGGACGGUCAGGGGAGACCUCCAGGCGCAGGG	chr7:150038499-150038755(-)$1	256	43	83	14.1932
UCACGCAGGUCUAUGGCUUCUACGAUGAGUGCCUGCGCAA	chr16:30094575-30094816(+)$1	241	194	234	14.7028
ccggccccgcUGCCUGGAAUUAACCCCGCUGUGCUUGCUC	chr17:74732445-74732669(-)$1	224	70	110	16.9127
CAGGCGUCCUGGCGGCCGGGUCAGGCUGGAUUGGACGUCU	chr21:45739488-45739762(+)$1	274	147	187	16.2507
AUCCUACUAGGCAGAGGGAAAUACCGCCUACACUAGGCAG	chr10:102729592-102729930(+)$1	338	185	225	13.4507
gcccggcguccgcggggagcggcgcgcggggggccgggcA	chr11:62572486-62572799(-)$1	313	95	135	14.0548
UGGAUCUGGCAUCAGUCAAGAAGGCUAGGGgccaggugug	chr20:32246781-32247020(-)$1	239	96	136	12.5982
UCCGGUGCUAGUCAAACAGGAGCUGGGGGAGGCUCGGGCC	chr6:33257955-33258226(+)$1	271	194	234	14.4289
GUAGGAGCCUGCAUGCGUGACCGCUGCACGUGUACACCCA	chr11:72533726-72534034(+)$1	308	18	58	12.1125
GGUGCUUGGGUGGGGCUGACGGCUUCACCCCUAAGAGGGC	chr17:75493403-75493681(+)$1	278	56	96	14.7721
GUCAGUGAGGCUGGGCCCCAGGCAGGUGCCCACUGCUGUG	chr16:2136744-2137082(+)$1	338	142	182	11.8491
GCCACACGGGUGGGACCCCCGCAGGGAUCACCCGGGCCCC	chr21:47565486-47565743(-)$1	257	142	182	14.7140
GAGCGGGCGGUUGUCAGGAGUAACGGGGACUGUGGGCCCG	chr14:89029476-89029724(+)$1	248	79	119	13.2925
GUGCUUCCUGGUGCCCCCGCCCAACCAGGAGGCCCAGGAG	chr8:145004118-145004385(-)$1	267	23	63	12.1904
GGUGGGAUACGGGGGGUCUCGACACCUCUCUGGGCCGUAA	chr10:106014763-106015058(+)$1	295	94	134	15.6994
CGCCCGAGGCUGGGGUCUGCGGCGCCGGCGGGGCUGGUGG	chr20:62284298-62284616(-)$1	318	75	115	11.5475
AUCAUCGGCCACUAUGACUGCACUUAUGGUGGUGGCGUGG	chr3:48638183-48638457(-)$1	274	11	51	16.3443
GCAGGGUACAGCUCAGGGCUGUGGGUCCCAGGUGAGACCU	chr16:66976081-66976358(+)$1	277	100	140	12.2091
GGGCAGGGGUGAUCCUUGCAGAUGACGGUGACCACCUGUC	chr11:72406576-72406799(-)$1	223	64	104	16.6763
UGAAAGAGCUCGUGCAGAAUUUACUGGUGAGAAACCUUGA	chr20:60583886-60584150(-)$1	264	17	57	16.2982
AGGAUCCUCCACCAUCUGUCGUGCAGUGGCUGGCGGAUUC	chr17:37009705-37009953(-)$1	248	21	61	12.2152
UGUGGGGCCUGCUGCAGCCCUUUCUGAGUGGCCCCGACCC	chr11:65746108-65746380(+)$1	272	110	150	14.3904
GCCCGGCGAGUUCCGCGGGCGGGCGCGGGUGGCCUCCCGA	chr9:97767496-97767730(+)$1	234	176	216	14.8342

#DB
(((((((((.(((.((......)).)))))))))))))))	chr2:162017046-162017308(+)$1	1	104	144	15.9785
(((((((..((((((((......)))))))).))))))))	chr11:61188613-61188873(-)$1	1	127	167	14.3485
)((((((.((((...(((.....)))))))....))))))	chr20:62338964-62339253(-)$1	1	178	218	12.7828
((((.(((((((((((((.....))).)))...)).))).	chr17:79971453-79971685(+)$1	1	58	98	13.2437
((..((((..(((.(((.....))).)))..))))..)).	chr11:64533799-64534069(-)$1	1	46	86	12.1897
(((((((.((.(((((.....))))).))...))))))).	chr8:23003020-23003316(-)$1	1	153	193	11.5267
.(..(((..((((.(((......))))))).)))..))))	chr9:139836316-139836558(-)$1	1	139	179	15.2849
..((((((..(((..((......))..))).))))))...	chr20:31606884-31607130(+)$1	1	110	150	14.2581
.((((.(((....((.(((....))).))..))).))).)	chr3:52514324-52514606(+)$1	1	156	196	12.4569
(((...(((..((.((((....))))))..)))...))).	chr11:65391413-65391698(+)$1	1	87	127	12.4626
(((((((.((((((((((......)))).)))..))).))	chr19:51307560-51307852(-)$1	1	7	47	13.2316
(((..((((((((((((...))))))))))))...)))..	chr15:65845321-65845549(-)$1	1	185	225	13.7723
(((..((((..((.(((......))).))))))..)))))	chr19:1273501-1273721(+)$1	1	30	70	14.9078
..((((.(((.(.((((.....))...)).).))))))).	chr16:30764543-30764854(+)$1	1	119	159	11.8382
(((((((.((((.(.(((...))).).))))...))))))	chr2:178128948-178129234(-)$1	1	199	239	12.1641
(((.(((.(((((.((((.....)))))).))).))).))	chr11:62592476-62592761(-)$1	1	183	223	13.7121
((.(((...((.(.(((......))).).))....))).)	chr1:155885470-155885704(-)$1	1	156	196	16.9723
((((((((.((.(((((.....))))..).)).)))))))	chr10:104489569-104489837(+)$1	1	103	143	12.7451
))).(((((((...(((......)))....))))))).((	chr22:50873416-50873650(+)$1	1	147	187	14.6152
(((((...(((.(((((......))))))))))))...))	chr17:7081558-7081824(-)$1	1	3	43	13.9822
))))))((((....(((......)))...)))).((((((	chr1:28905887-28906116(-)$1	1	86	126	14.1608
))))(((((((((((((......)))..)))))))))).(	chr10:119133656-119133967(-)$1	1	204	244	16.2203
(...(((...((((.(......).))))..)))..))).)	chr19:39926255-39926506(-)$1	1	82	122	14.4258
((((((((((..(((((....)))))..)))...))))))	chr12:125347927-125348184(-)$1	1	180	220	12.5738
((((..(((.(((((((.....))))))).))))))))))	chr11:47193650-47193911(-)$1	1	108	148	14.3828
(((((((.((.(((((((((...)))))))))...)))))	chr11:122932308-122932639(-)$1	1	229	269	13.4607
(((((((((((.(((((......)).)))..))))).).)	chr2:88427250-88427493(-)$1	1	76	116	13.1125
((((((.((.(((.(((......))).)))..)).)))).	chr20:61594246-61594532(+)$1	1	203	243	14.6761
(((((...((((((((((...)))))))...)))...)))	chr19:48638727-48638994(-)$1	1	165	205	13.1627
((((....(((...(((((...))))))))....))))))	chr17:73775465-73775731(-)$1	1	17	57	13.9872
..((((..(((((.(((......))))))))))))).)))	chr16:50100156-50100444(+)$1	1	199	239	12.8229
(((((((.(((((.(((......))).)).))).))))))	chr1:2341822-2342098(-)$1	1	195	235	18.2029
((..((((((((.((((......)))))))...))))).)	chr7:150038499-150038755(-)$1	1	43	83	14.1932
(..(((((((((((.(......).)).)).)))))))...	chr16:30094575-30094816(+)$1	1	194	234	14.7028
(.(((..(((.((..((......))..)).)))...))).	chr17:74732445-74732669(-)$1	1	70	110	16.9127
(((((((((...(((((......)))))....))))))))	chr21:45739488-45739762(+)$1	1	147	187	16.2507
..((((.(((((...((......)))))))...))))..)	chr10:102729592-102729930(+)$1	1	185	225	13.4507
(((((((.((((((.(......).))))))..)))))))(	chr11:62572486-62572799(-)$1	1	95	135	14.0548
((.(((((((.((((((.....)))).)).))))))).))	chr20:32246781-32247020(-)$1	1	96	136	12.5982
(((((.(((..((...(((...)))..)).))))))))))	chr6:33257955-33258226(+)$1	1	194	234	14.4289
(((.(.(..((((.(((....)))))))).).)))..)))	chr11:72533726-72534034(+)$1	1	18	58	12.1125
(((.(((((((((((((...))))))))))....))).))	chr17:75493403-75493681(+)$1	1	56	96	14.7721
(.(((((.(((...(((...)))....)))))))).)).)	chr16:2136744-2137082(+)$1	1	142	182	11.8491
(((...(((((((..(((.....))).)))))))))))))	chr21:47565486-47565743(-)$1	1	142	182	14.7140
(..(((((((((.((.(......))).))))....)))))	chr14:89029476-89029724(+)$1	1	79	119	13.2925
(.(((((((((.(((.((.........)).))))))))))	chr8:145004118-145004385(-)$1	1	23	63	12.1904
(((.((....(((((((......)))))))....))...)	chr10:106014763-106015058(+)$1	1	94	134	15.6994
.((((...(((((.(((...))).))))).)))).))).)	chr20:62284298-62284616(-)$1	1	75	115	11.5475
((...(.((((((((((......)))))))))).).))))	chr3:48638183-48638457(-)$1	1	11	51	16.3443
(((((((...(((..(((((...)))))..)))...))).	chr16:66976081-66976358(+)$1	1	100	140	12.2091
((((((((((.(((.((......)).))).))).))))))	chr11:72406576-72406799(-)$1	1	64	104	16.6763
((((.(((((((..(((......))).))))....)))..	chr20:60583886-60584150(-)$1	1	17	57	16.2982
.((((((.((((((.((((...))))))).))).))))))	chr17:37009705-37009953(-)$1	1	21	61	12.2152
(.(((((((.(((.(((......)))))))))))))))..	chr11:65746108-65746380(+)$1	1	110	150	14.3904
((((((.(((.((((((......))))))....)))))).	chr9:97767496-97767730(+)$1	1	176	216	14.8342

#PSSM
g : 0.20	c : 0.18	e : 0.10	i : 0.07	f : 0.07	b : 0.07	= : 0.05	[ : 0.05	h : 0.05	! : 0.03	" : 0.03	d : 0.03	& : 0.01	
g : 0.20	f : 0.10	c : 0.10	e : 0.09	i : 0.07	d : 0.07	[ : 0.07	" : 0.05	h : 0.05	! : 0.05	= : 0.03	a : 0.03	b : 0.01	& : 0.01	
g : 0.20	f : 0.12	c : 0.12	d : 0.10	i : 0.09	! : 0.09	e : 0.09	h : 0.05	= : 0.03	[ : 0.03	" : 0.03	
g : 0.21	f : 0.10	d : 0.10	i : 0.09	! : 0.09	c : 0.07	" : 0.07	[ : 0.07	e : 0.07	h : 0.05	= : 0.01	: : 0.01	
g : 0.20	c : 0.16	d : 0.12	i : 0.09	f : 0.07	e : 0.07	" : 0.05	! : 0.05	= : 0.03	[ : 0.03	h : 0.03	# : 0.01	a : 0.01	b : 0.01	
g : 0.18	c : 0.14	d : 0.10	i : 0.09	" : 0.09	= : 0.05	f : 0.05	[ : 0.05	e : 0.05	b : 0.03	h : 0.03	! : 0.03	a : 0.03	# : 0.01	
g : 0.18	c : 0.18	i : 0.09	[ : 0.09	" : 0.07	e : 0.07	= : 0.05	f : 0.05	d : 0.05	h : 0.03	# : 0.03	! : 0.03	b : 0.01	a : 0.01	
c : 0.20	[ : 0.18	" : 0.10	= : 0.09	g : 0.09	! : 0.07	e : 0.07	d : 0.05	i : 0.05	# : 0.03	f : 0.01	b : 0.01	
c : 0.32	d : 0.10	= : 0.09	! : 0.09	g : 0.09	e : 0.09	b : 0.05	" : 0.05	i : 0.03	[ : 0.01	f : 0.01	# : 0.01	
c : 0.27	d : 0.12	! : 0.09	[ : 0.07	b : 0.07	= : 0.07	g : 0.07	e : 0.07	" : 0.05	# : 0.03	h : 0.01	f : 0.01	i : 0.01	
c : 0.27	d : 0.12	[ : 0.12	b : 0.07	! : 0.07	= : 0.07	g : 0.07	e : 0.07	# : 0.03	h : 0.01	" : 0.01	f : 0.01	i : 0.01	
c : 0.18	b : 0.16	d : 0.12	[ : 0.09	e : 0.07	= : 0.07	" : 0.07	g : 0.07	# : 0.03	f : 0.03	h : 0.01	a : 0.01	! : 0.01	i : 0.01	
c : 0.21	b : 0.14	e : 0.10	" : 0.09	= : 0.07	[ : 0.07	g : 0.07	d : 0.05	# : 0.03	a : 0.03	f : 0.03	h : 0.01	i : 0.01	! : 0.01	
[ : 0.23	" : 0.10	c : 0.10	! : 0.09	e : 0.07	b : 0.07	= : 0.07	d : 0.07	g : 0.05	f : 0.03	h : 0.01	a : 0.01	# : 0.01	i : 0.01	
c : 0.32	d : 0.10	[ : 0.10	e : 0.09	b : 0.07	! : 0.07	" : 0.05	= : 0.05	g : 0.05	h : 0.01	i : 0.01	f : 0.01	
c : 0.34	b : 0.12	d : 0.12	e : 0.10	[ : 0.05	= : 0.05	a : 0.05	g : 0.05	h : 0.01	i : 0.01	" : 0.01	f : 0.01	
c : 0.38	b : 0.12	d : 0.12	e : 0.09	o : 0.07	= : 0.05	g : 0.05	h : 0.01	n : 0.01	i : 0.01	a : 0.01	f : 0.01	
o : 0.50	c : 0.10	n : 0.10	d : 0.07	l : 0.07	m : 0.03	e : 0.03	i : 0.01	g : 0.01	b : 0.01	
o : 0.52	n : 0.18	l : 0.10	m : 0.05	c : 0.03	e : 0.03	i : 0.01	r : 0.01	d : 0.01	
o : 0.52	n : 0.18	l : 0.16	m : 0.07	i : 0.01	r : 0.01	e : 0.01	
o : 0.52	n : 0.18	l : 0.12	m : 0.07	= : 0.03	c : 0.03	r : 0.01	
o : 0.52	n : 0.16	l : 0.09	c : 0.07	e : 0.03	m : 0.03	= : 0.03	g : 0.01	r : 0.01	
o : 0.45	c : 0.10	n : 0.07	d : 0.07	e : 0.05	a : 0.05	b : 0.03	= : 0.03	g : 0.03	l : 0.03	m : 0.01	r : 0.01	
c : 0.34	b : 0.12	e : 0.10	d : 0.10	] : 0.07	= : 0.05	g : 0.05	h : 0.01	o : 0.01	i : 0.01	4 : 0.01	a : 0.01	r : 0.01	f : 0.01	
c : 0.30	d : 0.16	e : 0.12	b : 0.12	= : 0.05	g : 0.05	] : 0.03	f : 0.03	h : 0.01	3 : 0.01	i : 0.01	4 : 0.01	r : 0.01	
c : 0.29	d : 0.16	e : 0.14	] : 0.05	2 : 0.05	= : 0.05	g : 0.05	b : 0.03	f : 0.03	h : 0.01	3 : 0.01	a : 0.01	i : 0.01	4 : 0.01	r : 0.01	
] : 0.23	d : 0.12	e : 0.12	c : 0.10	2 : 0.10	= : 0.05	g : 0.05	3 : 0.03	4 : 0.03	f : 0.03	h : 0.01	b : 0.01	i : 0.01	r : 0.01	
c : 0.21	b : 0.21	d : 0.14	e : 0.10	g : 0.07	= : 0.05	2 : 0.05	f : 0.03	h : 0.01	a : 0.01	4 : 0.01	3 : 0.01	i : 0.01	
c : 0.23	b : 0.20	= : 0.09	d : 0.09	2 : 0.05	g : 0.05	e : 0.05	] : 0.03	a : 0.03	4 : 0.03	3 : 0.03	f : 0.03	h : 0.01	i : 0.01	
] : 0.25	c : 0.16	d : 0.12	2 : 0.10	= : 0.09	4 : 0.05	g : 0.05	3 : 0.03	e : 0.03	h : 0.01	b : 0.01	i : 0.01	f : 0.01	
c : 0.25	4 : 0.10	d : 0.10	3 : 0.09	2 : 0.09	g : 0.09	= : 0.07	] : 0.03	a : 0.03	b : 0.03	e : 0.03	h : 0.01	i : 0.01	
c : 0.27	4 : 0.16	3 : 0.10	d : 0.10	g : 0.09	= : 0.07	] : 0.05	e : 0.03	2 : 0.03	f : 0.01	b : 0.01	i : 0.01	
c : 0.29	4 : 0.14	3 : 0.12	g : 0.12	d : 0.10	= : 0.05	i : 0.03	e : 0.03	f : 0.01	2 : 0.01	] : 0.01	b : 0.01	
g : 0.16	4 : 0.12	3 : 0.12	c : 0.10	d : 0.09	] : 0.09	i : 0.07	2 : 0.05	e : 0.05	= : 0.03	b : 0.03	f : 0.01	: : 0.01	
g : 0.23	3 : 0.10	c : 0.10	i : 0.07	d : 0.07	f : 0.05	2 : 0.05	] : 0.05	4 : 0.05	e : 0.05	= : 0.03	b : 0.03	h : 0.03	a : 0.01	
g : 0.23	c : 0.18	3 : 0.09	i : 0.07	f : 0.07	] : 0.05	2 : 0.05	d : 0.05	e : 0.05	= : 0.03	h : 0.03	b : 0.03	a : 0.01	
c : 0.25	g : 0.21	i : 0.07	f : 0.07	d : 0.05	3 : 0.05	b : 0.05	e : 0.05	= : 0.03	2 : 0.03	h : 0.03	] : 0.03	a : 0.01	
c : 0.20	g : 0.16	i : 0.09	f : 0.09	b : 0.07	3 : 0.07	] : 0.07	= : 0.05	e : 0.05	d : 0.03	h : 0.03	: : 0.01	a : 0.01	2 : 0.01	
g : 0.16	c : 0.12	] : 0.12	i : 0.09	f : 0.09	3 : 0.07	e : 0.07	h : 0.05	: : 0.05	d : 0.05	= : 0.03	b : 0.03	2 : 0.01	
g : 0.14	e : 0.14	] : 0.12	f : 0.10	i : 0.09	= : 0.07	: : 0.05	3 : 0.05	h : 0.05	d : 0.05	c : 0.03	a : 0.01	b : 0.01	2 : 0.01	

#score	769.4019042026545
#seq	55
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_CDS_m1_run1.txt

#BEAR
ffff[bbuuuuuuuuuuuubbffff	chrX:48433451-48433708(+)$1	257	193	218	23.2614
g[eeeeewwwwwwwwwwwwwweeee	chr2:55461882-55462093(+)$1	211	123	148	24.2684
f:eeeeewwwwwwwwwwwwwweeee	chr16:68156759-68157026(+)$1	267	207	232	22.9709
g[eeeeewwwwwwwwwwwwwweeee	chr2:55461995-55462198(+)$1	203	10	35	24.2684
##eeeeeuuuuuuuuuuuueeeee]	chr10:103546064-103546332(-)$1	268	15	40	24.6120
:eeeeewwwwwwwwwwwwwweeeee	chr16:68156826-68157112(+)$1	286	141	166	22.6205
c[fffffftttttttttttffffff	chr4:84377101-84377410(+)$1	309	270	295	22.3609
e!!dddduuuuuuuuuuuuddddee	chr10:103433150-103433506(-)$1	356	141	166	23.5628
!!cccbbuuuuuuuuuuuubb]ccc	chr16:2871306-2871557(+)$1	251	77	102	23.0570
hhhhhhhuuuuuuuuuuuuhhhhhh	chr4:39459756-39459992(-)$1	236	154	179	20.9202
cc[dddduuuuuuuuuuuudddd33	chr15:64791680-64791938(+)$1	258	57	82	23.1557
gggggggvvvvvvvvvvvvvggggg	chr7:105891388-105891636(-)$1	248	20	45	24.3548
!!eeeeevvvvvvvvvvvvveeeee	chr15:64791495-64791773(+)$1	278	186	211	25.0904
gggggggvvvvvvvvvvvvvggggg	chr6:27101127-27101407(+)$1	280	216	241	24.3548
d[fffffftttttttttttffffff	chr9:115337208-115337564(+)$1	356	11	36	22.1873
!!eeeeeuuuuuuuuuuuueeeee3	chr1:247320316-247320616(-)$1	300	98	123	24.8053
iiiiiiiitttttttttttiiiiii	chr11:134118111-134118460(-)$1	349	260	285	21.4268
gg[dddduuuuuuuuuuuudddd]g	chr17:34171842-34172123(+)$1	281	200	225	23.5121
fffffffattttttttttta]ffff	chr1:46775775-46776009(+)$1	234	140	165	22.9774
ff[ddddvvvvvvvvvvvvvddddf	chr2:55460416-55460654(+)$1	238	5	30	23.4988
gggggggtttttttttttggggggg	chr6:26217071-26217326(+)$1	255	93	118	21.9376
::fffffftttttttttttffffff	chr2:62099324-62099552(-)$1	228	13	38	20.2622
ffffffwwwwwwwwwwwwwwfffff	chr16:89006523-89006769(-)$1	246	154	179	23.1419
GG::cccuuuuuuuuuuuucccccc	chr18:77170929-77171256(+)$1	327	104	129	20.7451
ddddyyyyyyyyyyyyyyyydddd]	chr11:1010521-1010826(+)$1	305	231	256	19.3616
g[eeeeewwwwwwwwwwwwwweeee	chr2:55461984-55462195(+)$1	211	21	46	24.2684
g[eeeeewwwwwwwwwwwwwweeee	chr2:55461974-55462184(+)$1	210	31	56	24.2684
eeeeeeeuuuuuuuuuuuueeeee]	chr2:62099491-62099717(-)$1	226	173	198	24.2885
ff[dddduuuuuuuuuuuudddd22	chr1:247319828-247320145(-)$1	317	254	279	22.8061
g[eeeeewwwwwwwwwwwwwweeee	chr2:55461866-55462068(+)$1	202	139	164	24.2684
gffffffvvvvvvvvvvvvvfffff	chr11:122928369-122928609(-)$1	240	180	205	24.2059
[afffffftttttttttttffffff	chr20:50139519-50139787(-)$1	268	145	170	22.2076
eeeeeeevvvvvvvvvvvvveeeee	chr1:45480898-45481160(+)$1	262	179	204	24.5156
gggggggvvvvvvvvvvvvvggggg	chr6:75949929-75950200(-)$1	271	159	184	24.3548
ffffffyyyyyyyyyyyyyyyyfff	chr8:124221615-124221871(+)$1	256	33	58	21.0729
!ffffffuuuuuuuuuuuuffffff	chr9:138774566-138774814(-)$1	248	214	239	24.0124
$$eeeeevvvvvvvvvvvvveeeee	chr2:58386386-58386698(-)$1	312	176	201	24.4807
f!!cccwwwwwwwwwwwwwwccc22	chr16:68155955-68156253(+)$1	298	176	201	22.6576
gggggggtttttttttttggggggg	chr7:99621097-99621384(+)$1	287	141	166	21.9376
g[eeeeewwwwwwwwwwwwwweeee	chr2:55461875-55462082(+)$1	207	130	155	24.2684
ff[bbwwwwwwwwwwwwwwbbffff	chrX:129263294-129263647(-)$1	353	254	279	21.3233
b[ccc[auuuuuuuuuuuua]ccc]	chr7:100410616-100410903(-)$1	287	149	174	23.8551
gg[cccwwwwwwwwwwwwwwcccgg	chr14:92583744-92584087(-)$1	343	250	275	23.2427
ggggggguuuuuuuuuuuugggggg	chr11:85692875-85693141(-)$1	266	61	86	24.1163
!!eeeeexxxxxxxxxxxxxxxeee	chr1:228645390-228645610(-)$1	220	11	36	19.8338
eeee[bbuuuuuuuuuuuubb22ee	chr2:176042910-176043188(-)$1	278	141	166	22.5606
ffffffwwwwwwwwwwwwwwfffff	chr2:198361964-198362205(-)$1	241	131	156	23.1419
::eeeeeuuuuuuuuuuuueeeee:	chr1:89401665-89401977(-)$1	312	254	279	21.5087
"""ddddxxxxxxxxxxxxxxxddd	chr8:101717140-101717366(-)$1	226	85	110	18.2542
gg[ddddyyyyyyyyyyyyyyyydd	chr1:52254944-52255202(-)$1	258	21	46	20.3251
::eeeeevvvvvvvvvvvvveeeee	chr1:27059066-27059368(+)$1	302	73	98	22.8730
[eeeeeauuuuuuuuuuuua]eeee	chr3:33906749-33907013(+)$1	264	88	113	24.8176
[ffffffuuuuuuuuuuuuffffff	chr1:24021079-24021286(+)$1	207	129	154	24.0166
gggggggwwwwwwwwwwwwwwgggg	chr15:64792103-64792407(+)$1	304	67	92	23.5177
gggggggvvvvvvvvvvvvvggggg	chr4:87967816-87968193(+)$1	377	185	210	24.3548
bb[ddddtttttttttttdddd]bb	chr13:27827854-27828079(+)$1	225	35	60	20.0662
f####bbvvvvvvvvvvvvvbb444	chrX:153628941-153629165(+)$1	224	86	111	22.2282
d[fffffftttttttttttffffff	chr16:56448073-56448346(-)$1	273	50	75	22.1873
f"""cccuuuuuuuuuuuucccfff	chr10:32197231-32197504(-)$1	273	152	177	23.9048

#otherMatches

#Seq PSSM
UCAGCAGUUUCGGACCUAUCUCUGA	chrX:48433451-48433708(+)$1	257	193	218	23.2614
GCUAAGAAAAGGAAGAAGAAGUCUU	chr2:55461882-55462093(+)$1	211	123	148	24.2684
CAGUUCCUUCACCCUUUACCUGGAG	chr16:68156759-68157026(+)$1	267	207	232	22.9709
GCUAAGAAAAGGAAGAAGAAGUCUU	chr2:55461995-55462198(+)$1	203	10	35	24.2684
GACCAGAUGAUAAAAGAAUUCUGGA	chr10:103546064-103546332(-)$1	268	15	40	24.6120
AGUUCCUUCACCCUUUACCUGGAGC	chr16:68156826-68157112(+)$1	286	141	166	22.6205
CAUUAACCUUAGUCCUAAUGGUUAG	chr4:84377101-84377410(+)$1	309	270	295	22.3609
CCUACCAGUUCCGUCCAGAUGGUGC	chr10:103433150-103433506(-)$1	356	141	166	23.5628
CUUGGCCUGUAACAAGAAUGGACUG	chr16:2871306-2871557(+)$1	251	77	102	23.0570
CCUUCUUGGAAAGAAAAAAAAGAGG	chr4:39459756-39459992(-)$1	236	154	179	20.9202
CGAUCUGGAAAAGGACCAGCAGAAA	chr15:64791680-64791938(+)$1	258	57	82	23.1557
GAAUGGCAAGGUGACAAAAAGCUAU	chr7:105891388-105891636(-)$1	248	20	45	24.3548
GACAGUGGGGAUGAAUGGGACAUUG	chr15:64791495-64791773(+)$1	278	186	211	25.0904
UCCAUGUGAAAGAAAGUGAGACAUG	chr6:27101127-27101407(+)$1	280	216	241	24.3548
UAUCUCUGGCUUCACCAAACAGAGG	chr9:115337208-115337564(+)$1	356	11	36	22.1873
UCAUUUCAGAUACAUCAGAGAAAUC	chr1:247320316-247320616(-)$1	300	98	123	24.8053
UUUUCAAUAAAAUAUCAAAGUUGAA	chr11:134118111-134118460(-)$1	349	260	285	21.4268
GUGAGUAUUAGAAUGUGUUUAUUAA	chr17:34171842-34172123(+)$1	281	200	225	23.5121
AUCCUCUCGAUCACAUACAGAAGAG	chr1:46775775-46776009(+)$1	234	140	165	22.9774
GGUAAUUGUCAAACUAAAUGAGUUC	chr2:55460416-55460654(+)$1	238	5	30	23.4988
CAGUGGAUUGUUAGUUCUUCUGCUG	chr6:26217071-26217326(+)$1	255	93	118	21.9376
uucuauuuuuuaaagauauaaauag	chr2:62099324-62099552(-)$1	228	13	38	20.2622
GCCCACCCCUCAUUCACCCUGUGGG	chr16:89006523-89006769(-)$1	246	154	179	23.1419
UGCCCGCUCCUCCAGACCCGCGUCC	chr18:77170929-77171256(+)$1	327	104	129	20.7451
GCCCCACACCUCUCCCCUUUGGGCU	chr11:1010521-1010826(+)$1	305	231	256	19.3616
GCUAAGAAAAGGAAGAAGAAGUCUU	chr2:55461984-55462195(+)$1	211	21	46	24.2684
GCUAAGAAAAGGAAGAAGAAGUCUU	chr2:55461974-55462184(+)$1	210	31	56	24.2684
uuauauucuauuuuuuaaagauaua	chr2:62099491-62099717(-)$1	226	173	198	24.2885
CCCUAUAAAUGUAAAAAAAUGUAAA	chr1:247319828-247320145(-)$1	317	254	279	22.8061
GCUAAGAAAAGGAAGAAGAAGUCUU	chr2:55461866-55462068(+)$1	202	139	164	24.2684
UAGAUGUAGCAUUGUUCCACACAUU	chr11:122928369-122928609(-)$1	240	180	205	24.2059
GUGCCUGCCAUUCCCAUCUGCAGGU	chr20:50139519-50139787(-)$1	268	145	170	22.2076
GGCCAUGGGCUUUAUCCUGACAUGG	chr1:45480898-45481160(+)$1	262	179	204	24.5156
GCCACCAUGAUUCUUACAGUUGGUG	chr6:75949929-75950200(-)$1	271	159	184	24.3548
ACUUUUUUCCUCCUUAGUUCCUGAA	chr8:124221615-124221871(+)$1	256	33	58	21.0729
GCGCACCUGGUGCAUGGAUGGUGUG	chr9:138774566-138774814(-)$1	248	214	239	24.0124
UUGAGACUCUUGAUAUUUCUGUCUU	chr2:58386386-58386698(-)$1	312	176	201	24.4807
AUCUCUCCUAACUGUCAUCAAGAAU	chr16:68155955-68156253(+)$1	298	176	201	22.6576
UGUGGGGGCAGGAUUCCACCCUACA	chr7:99621097-99621384(+)$1	287	141	166	21.9376
GCUAAGAAAAGGAAGAAGAAGUCUU	chr2:55461875-55462082(+)$1	207	130	155	24.2684
GUAGGUAAAUUCUUAAUGUUCACAU	chrX:129263294-129263647(-)$1	353	254	279	21.3233
UGUCUCCUACGUCAAGAUUGAAGAG	chr7:100410616-100410903(-)$1	287	149	174	23.8551
GUCUGCAUUUUUUUAAACCAGCAAU	chr14:92583744-92584087(-)$1	343	250	275	23.2427
UACAAAUUCUAUUUCGUCUGUUUGU	chr11:85692875-85693141(-)$1	266	61	86	24.1163
UAAGGGCUCGCUGGCCUUCACUGCC	chr1:228645390-228645610(-)$1	220	11	36	19.8338
UGGUUGCUUUCUUGAUUUUGUUUGC	chr2:176042910-176043188(-)$1	278	141	166	22.5606
GUAACAAAAGAUGGUGUGACUGUUG	chr2:198361964-198362205(-)$1	241	131	156	23.1419
AACUCCUAACAACAUUUUCGGGGGA	chr1:89401665-89401977(-)$1	312	254	279	21.5087
AACGGCUGUUUCCUCUUAUUCAAGC	chr8:101717140-101717366(-)$1	226	85	110	18.2542
GGUGGUUAUCAUCAGAACUCUUAAA	chr1:52254944-52255202(-)$1	258	21	46	20.3251
UCACAGCUUUUGUUUUUCUUGUUGU	chr1:27059066-27059368(+)$1	302	73	98	22.8730
CGCCAGCUCCAUCACAAACGCCUGG	chr3:33906749-33907013(+)$1	264	88	113	24.8176
GAUCCAGGAACACAUCGAUCUGGGU	chr1:24021079-24021286(+)$1	207	129	154	24.0166
GUCCUCCAGCCAGUUCCCUUGGGAG	chr15:64792103-64792407(+)$1	304	67	92	23.5177
AGGGAGCAGCAUUCCAUCCAGCUCC	chr4:87967816-87968193(+)$1	377	185	210	24.3548
UUCUGGUUUCAGUAAUUCGCCAAAA	chr13:27827854-27828079(+)$1	225	35	60	20.0662
UCCAUUGCUCCUUAGAUCCACAUCU	chrX:153628941-153629165(+)$1	224	86	111	22.2282
GCAGGAAGAAAUAAACUUCCUUUCU	chr16:56448073-56448346(-)$1	273	50	75	22.1873
GACUGUCAACCUAAGCCUGGACCUG	chr10:32197231-32197504(-)$1	273	152	177	23.9048

#DB
((((.((............))))))	chrX:48433451-48433708(+)$1	1	193	218	23.2614
(.(((((..............))))	chr2:55461882-55462093(+)$1	1	123	148	24.2684
).(((((..............))))	chr16:68156759-68157026(+)$1	1	207	232	22.9709
(.(((((..............))))	chr2:55461995-55462198(+)$1	1	10	35	24.2684
..(((((............))))).	chr10:103546064-103546332(-)$1	1	15	40	24.6120
.(((((..............)))))	chr16:68156826-68157112(+)$1	1	141	166	22.6205
(.((((((...........))))))	chr4:84377101-84377410(+)$1	1	270	295	22.3609
(..((((............))))))	chr10:103433150-103433506(-)$1	1	141	166	23.5628
..(((((............)).)))	chr16:2871306-2871557(+)$1	1	77	102	23.0570
(((((((............))))))	chr4:39459756-39459992(-)$1	1	154	179	20.9202
((.((((............))))..	chr15:64791680-64791938(+)$1	1	57	82	23.1557
(((((((.............)))))	chr7:105891388-105891636(-)$1	1	20	45	24.3548
..(((((.............)))))	chr15:64791495-64791773(+)$1	1	186	211	25.0904
(((((((.............)))))	chr6:27101127-27101407(+)$1	1	216	241	24.3548
(.((((((...........))))))	chr9:115337208-115337564(+)$1	1	11	36	22.1873
..(((((............))))).	chr1:247320316-247320616(-)$1	1	98	123	24.8053
((((((((...........))))))	chr11:134118111-134118460(-)$1	1	260	285	21.4268
((.((((............)))).)	chr17:34171842-34172123(+)$1	1	200	225	23.5121
((((((((...........).))))	chr1:46775775-46776009(+)$1	1	140	165	22.9774
((.((((.............)))))	chr2:55460416-55460654(+)$1	1	5	30	23.4988
(((((((...........)))))))	chr6:26217071-26217326(+)$1	1	93	118	21.9376
..((((((...........))))))	chr2:62099324-62099552(-)$1	1	13	38	20.2622
((((((..............)))))	chr16:89006523-89006769(-)$1	1	154	179	23.1419
((..(((............)))(((	chr18:77170929-77171256(+)$1	1	104	129	20.7451
((((................)))).	chr11:1010521-1010826(+)$1	1	231	256	19.3616
(.(((((..............))))	chr2:55461984-55462195(+)$1	1	21	46	24.2684
(.(((((..............))))	chr2:55461974-55462184(+)$1	1	31	56	24.2684
(((((((............))))).	chr2:62099491-62099717(-)$1	1	173	198	24.2885
((.((((............))))..	chr1:247319828-247320145(-)$1	1	254	279	22.8061
(.(((((..............))))	chr2:55461866-55462068(+)$1	1	139	164	24.2684
(((((((.............)))))	chr11:122928369-122928609(-)$1	1	180	205	24.2059
.(((((((...........))))))	chr20:50139519-50139787(-)$1	1	145	170	22.2076
(((((((.............)))))	chr1:45480898-45481160(+)$1	1	179	204	24.5156
(((((((.............)))))	chr6:75949929-75950200(-)$1	1	159	184	24.3548
((((((................)))	chr8:124221615-124221871(+)$1	1	33	58	21.0729
.((((((............))))))	chr9:138774566-138774814(-)$1	1	214	239	24.0124
..(((((.............)))))	chr2:58386386-58386698(-)$1	1	176	201	24.4807
(..(((..............)))..	chr16:68155955-68156253(+)$1	1	176	201	22.6576
(((((((...........)))))))	chr7:99621097-99621384(+)$1	1	141	166	21.9376
(.(((((..............))))	chr2:55461875-55462082(+)$1	1	130	155	24.2684
((.((..............))))))	chrX:129263294-129263647(-)$1	1	254	279	21.3233
(.(((.(............).))).	chr7:100410616-100410903(-)$1	1	149	174	23.8551
((.(((..............)))))	chr14:92583744-92584087(-)$1	1	250	275	23.2427
(((((((............))))))	chr11:85692875-85693141(-)$1	1	61	86	24.1163
..(((((...............)))	chr1:228645390-228645610(-)$1	1	11	36	19.8338
((((.((............))..))	chr2:176042910-176043188(-)$1	1	141	166	22.5606
((((((..............)))))	chr2:198361964-198362205(-)$1	1	131	156	23.1419
..(((((............))))).	chr1:89401665-89401977(-)$1	1	254	279	21.5087
...((((...............)))	chr8:101717140-101717366(-)$1	1	85	110	18.2542
((.((((................))	chr1:52254944-52255202(-)$1	1	21	46	20.3251
..(((((.............)))))	chr1:27059066-27059368(+)$1	1	73	98	22.8730
.((((((............).))))	chr3:33906749-33907013(+)$1	1	88	113	24.8176
.((((((............))))))	chr1:24021079-24021286(+)$1	1	129	154	24.0166
(((((((..............))))	chr15:64792103-64792407(+)$1	1	67	92	23.5177
(((((((.............)))))	chr4:87967816-87968193(+)$1	1	185	210	24.3548
((.((((...........)))).))	chr13:27827854-27828079(+)$1	1	35	60	20.0662
(....((.............))...	chrX:153628941-153629165(+)$1	1	86	111	22.2282
(.((((((...........))))))	chr16:56448073-56448346(-)$1	1	50	75	22.1873
(...(((............))))))	chr10:32197231-32197504(-)$1	1	152	177	23.9048

#PSSM
g : 0.30	f : 0.20	! : 0.08	: : 0.06	e : 0.06	d : 0.05	[ : 0.05	c : 0.03	b : 0.03	# : 0.01	h : 0.01	i : 0.01	G : 0.01	$ : 0.01	" : 0.01	
f : 0.18	g : 0.18	[ : 0.16	! : 0.10	e : 0.08	: : 0.06	# : 0.03	" : 0.03	h : 0.01	c : 0.01	i : 0.01	G : 0.01	d : 0.01	a : 0.01	$ : 0.01	b : 0.01	
e : 0.32	f : 0.22	[ : 0.13	g : 0.13	! : 0.03	c : 0.03	" : 0.03	h : 0.01	i : 0.01	: : 0.01	d : 0.01	# : 0.01	
e : 0.32	f : 0.22	d : 0.15	g : 0.13	c : 0.06	h : 0.01	i : 0.01	: : 0.01	b : 0.01	# : 0.01	" : 0.01	
e : 0.30	f : 0.20	d : 0.13	g : 0.13	c : 0.10	[ : 0.03	h : 0.01	i : 0.01	y : 0.01	b : 0.01	# : 0.01	
e : 0.30	f : 0.20	d : 0.13	g : 0.13	b : 0.06	c : 0.06	h : 0.01	i : 0.01	y : 0.01	w : 0.01	[ : 0.01	
e : 0.27	f : 0.15	d : 0.13	g : 0.13	w : 0.10	b : 0.06	c : 0.03	y : 0.03	a : 0.03	h : 0.01	i : 0.01	
u : 0.32	w : 0.23	v : 0.18	f : 0.08	t : 0.05	y : 0.05	x : 0.03	i : 0.01	a : 0.01	
u : 0.32	w : 0.23	v : 0.18	t : 0.16	y : 0.05	x : 0.03	
u : 0.32	w : 0.23	v : 0.18	t : 0.16	y : 0.05	x : 0.03	
u : 0.32	w : 0.23	v : 0.18	t : 0.16	y : 0.05	x : 0.03	
u : 0.32	w : 0.23	v : 0.18	t : 0.16	y : 0.05	x : 0.03	
u : 0.32	w : 0.23	v : 0.18	t : 0.16	y : 0.05	x : 0.03	
u : 0.32	w : 0.23	v : 0.18	t : 0.16	y : 0.05	x : 0.03	
u : 0.32	w : 0.23	v : 0.18	t : 0.16	y : 0.05	x : 0.03	
u : 0.32	w : 0.23	v : 0.18	t : 0.16	y : 0.05	x : 0.03	
u : 0.32	w : 0.23	v : 0.18	t : 0.16	y : 0.05	x : 0.03	
u : 0.32	w : 0.23	v : 0.18	t : 0.16	y : 0.05	x : 0.03	
u : 0.32	w : 0.23	v : 0.18	t : 0.11	y : 0.05	g : 0.03	x : 0.03	d : 0.01	
w : 0.22	v : 0.18	f : 0.11	d : 0.08	b : 0.06	e : 0.06	a : 0.05	g : 0.05	y : 0.05	c : 0.03	x : 0.03	h : 0.01	i : 0.01	
f : 0.16	e : 0.15	w : 0.13	d : 0.11	g : 0.11	b : 0.08	c : 0.06	] : 0.05	y : 0.03	x : 0.03	h : 0.01	i : 0.01	
e : 0.28	f : 0.22	g : 0.13	d : 0.11	c : 0.08	y : 0.03	x : 0.03	] : 0.01	h : 0.01	i : 0.01	2 : 0.01	b : 0.01	
e : 0.30	f : 0.25	g : 0.13	d : 0.11	c : 0.08	h : 0.01	i : 0.01	2 : 0.01	y : 0.01	] : 0.01	4 : 0.01	
e : 0.33	f : 0.25	g : 0.15	d : 0.06	c : 0.05	2 : 0.03	h : 0.01	3 : 0.01	i : 0.01	] : 0.01	b : 0.01	4 : 0.01	
f : 0.27	e : 0.27	g : 0.16	] : 0.06	c : 0.03	3 : 0.03	2 : 0.03	d : 0.03	h : 0.01	i : 0.01	: : 0.01	b : 0.01	4 : 0.01	

#score	1352.4583944846063
#seq	59
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_CDS_m1_run1.txt

#BEAR
$$$eeeee^^^^^^^^^^^^^^^^^^^^^eee	chr7:141464186-141464426(+)$1	240	102	134	23.4507
e[ccc[bbuuuuuuuuuuuubb]ccceeeee=	chr3:99567783-99568032(+)$1	249	14	46	21.1307
####cccxxxxxxxxxxxxxxxccc4444ccc	chr3:99568969-99569228(+)$1	259	183	215	22.4509
========uuuuuuuuuuuu==========cc	chr2:179431734-179431942(+)$1	208	140	172	22.3469
iiiiiibbxxxxxxxxxxxxxxxbb]iiiiii	chr2:179432051-179432307(+)$1	256	112	144	19.3481
Cffffffvvvvvvvvvvvvvffffff:::ccc	chr2:186661395-186661610(-)$1	215	136	168	17.2705
d!!eeeeevvvvvvvvvvvvveeeee22dddd	chr2:179428807-179429090(+)$1	283	98	130	22.7643
#bb[ddddtttttttttttdddd]bb333ccc	chr2:179432154-179432421(+)$1	267	128	160	19.4273
ggg[dddd^^^^^^^^^^^^^^^^^^^^^ddd	chr2:32991435-32991698(+)$1	263	143	175	23.3485
eeeedddduuuuuuuuuuuudddd]eeeeedd	chr2:186655992-186656237(-)$1	245	33	65	20.9730
!!eeeeeyyyyyyyyyyyyyyyyeeeee22dd	chr2:179416841-179417100(+)$1	259	145	177	22.4624
ddccc[bbuuuuuuuuuuuubb]ccc]dddd]	chr1:55352268-55352513(-)$1	245	123	155	20.6661
cc[eeeeeuuuuuuuuuuuueeeee]cccfff	chr2:179417392-179417639(+)$1	247	199	231	22.1100
d^^^^^^^^^^^^^^^^^^^dddd]bb=====	chr2:179427974-179428276(+)$1	302	188	220	18.3146
####eeeeettttttttttteeeeeccc]===	chr2:179436510-179436756(+)$1	246	79	111	20.5290
========^^^^^^^^^^^^^^^^^^^^^^^=	chr2:179431166-179431420(+)$1	254	74	106	23.1602
c[ccc[bbuuuuuuuuuuuubb]ccc]ccc33	chr18:32918884-32919129(-)$1	245	178	210	21.6017
e!!eeeeevvvvvvvvvvvvveeeee22eeee	chr2:186660776-186661060(-)$1	284	217	249	22.8040
h!!dddd^^^^^^^^^^^^^^^^^^^^^dddd	chr2:186657691-186657988(-)$1	297	47	79	23.2094
:ggggggg^^^^^^^^^^^^^^^^^^^^gggg	chr3:99568181-99568420(+)$1	239	56	88	21.7253
!!ffffffuuuuuuuuuuuuffffff]ccc]c	chr2:186657883-186658162(-)$1	279	128	160	21.1775
gggggg^^^^^^^^^^^^^^^^^^^^^^^ggg	chr7:141464458-141464712(+)$1	254	92	124	23.3610
[bbeeeeeuuuuuuuuuuuueeeee]bb]eee	chr3:187896807-187897072(+)$1	265	196	228	21.8346
bb"""cccuuuuuuuuuuuuccc333bb333e	chr2:179428629-179428867(+)$1	238	80	112	22.3112
dd[dddd^^^^^^^^^^^^^^^^^^^^^^ddd	chr2:179434271-179434507(+)$1	236	64	96	23.2803
[a[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:174417668-174417946(+)$1	278	236	268	22.5963
:::eeeee^^^^^^^^^^^^^^^^^^^^^eee	chr7:141464134-141464386(+)$1	252	154	186	20.6565
iii[dddduuuuuuuuuuuudddd55555iii	chr2:186656295-186656601(-)$1	306	227	259	20.4542
e!!eeeeevvvvvvvvvvvvveeeee22eeee	chr2:186660639-186660891(-)$1	252	48	80	22.8040
"""ffffffuuuuuuuuuuuuffffff22ccc	chr19:56188805-56189065(+)$1	260	204	236	20.7902
!!cccddddtttttttttttdddd]ccc22ee	chr2:186658456-186658721(-)$1	265	139	171	19.3313
###bb!!ccc^^^^^^^^^^^^^^^^^^ccc2	chr2:179428251-179428494(+)$1	243	49	81	20.4356
bb[ddddwwwwwwwwwwwwwwddddbb22ddd	chr15:49517295-49517548(+)$1	253	82	114	21.8495
d[ccc[bbuuuuuuuuuuuubb]cccdddd:=	chr3:99567658-99567918(+)$1	260	139	171	19.9718
[bb[ddddvvvvvvvvvvvvvdddd]bbffff	chr19:45911588-45911841(-)$1	253	79	111	21.2802
$bb[ddddxxxxxxxxxxxxxxxdddd]bbdd	chr2:179467093-179467351(+)$1	258	55	87	19.1755
ee[dddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr5:112228298-112228614(-)$1	316	38	70	22.9307
ggggeeeeettttttttttteeeee22ggggg	chr6:132031144-132031398(+)$1	254	34	66	19.4263
ff[ddddwwwwwwwwwwwwwwddddffffffE	chr2:179438959-179439218(+)$1	259	23	55	20.3959
"""eeeeeuuuuuuuuuuuueeeee4444ccc	chrX:71426744-71426980(+)$1	236	82	114	24.5512
$$$$dddd^^^^^^^^^^^^^^^^^^^^^ddd	chrX:71426787-71427062(+)$1	275	31	63	23.2392
gggggg^^^^^^^^^^^^^^^^^^^^^^^ggg	chr7:141464397-141464658(+)$1	261	153	185	23.3610
%ccc[cccuuuuuuuuuuuuccc]ccc4444b	chrX:71425472-71425737(+)$1	265	231	263	21.8795
ggggggg^^^^^^^^^^^^^^^^^^^^^^ggg	chr2:179432351-179432590(+)$1	239	140	172	23.3461
eeedddd[ccc^^^^^^^^^^^^^^^^^^ccc	chr7:141478254-141478559(+)$1	305	24	56	19.2612
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr2:186656533-186656769(-)$1	236	59	91	22.6584
ggggeeeeettttttttttteeeee22ggggg	chr6:132031092-132031344(+)$1	252	86	118	19.4263
####cccvvvvvvvvvvvvvccc]ffffff]c	chr19:45912055-45912311(-)$1	256	204	236	21.8681
gggggxxxxxxxxxxxxxxxggggggga22dd	chr2:186659698-186659961(-)$1	263	52	84	18.6004

#otherMatches

#Seq PSSM
AUCGCCAGUUUCUCUCACCCCACAUUCCUCUG	chr7:141464186-141464426(+)$1	240	102	134	23.4507
GAGUAACCUUUAUAUGAAGUGGCUGCCCAGGU	chr3:99567783-99568032(+)$1	249	14	46	21.1307
UUUGUGGUCAUCCUUUCUUUUUCUAAAUUGCA	chr3:99568969-99569228(+)$1	259	183	215	22.4509
UUCUCGCUUUUCAACAACAUAGUGAGAAAUGU	chr2:179431734-179431942(+)$1	208	140	172	22.3469
UUAUCUCCUCUUAACCACUCAAUGGUAGGUAG	chr2:179432051-179432307(+)$1	256	112	144	19.3481
GAUGAAACCCUGUACUUUUCUUUCAUAUCUUC	chr2:186661395-186661610(-)$1	215	136	168	17.2705
UCUUCAAGUUCUUUUCCAUCUUUUGACCAAAC	chr2:179428807-179429090(+)$1	283	98	130	22.7643
UCUUGGGAGUUCAACCUCAUCCUUGGCAGUUA	chr2:179432154-179432421(+)$1	267	128	160	19.4273
ggucaguggagcagucagaacauacacagcau	chr2:32991435-32991698(+)$1	263	143	175	23.3485
GAGCUUGCUUAACAUUUCAUGUAGUGUUUCCC	chr2:186655992-186656237(-)$1	245	33	65	20.9730
CAAUUCUACACACUGCAUUAUCAAGAAUAACA	chr2:179416841-179417100(+)$1	259	145	177	22.4624
GGGGGAACAGAACAGGCAAAGUGCCCACUGUG	chr1:55352268-55352513(-)$1	245	123	155	20.6661
UCAUUUUCUGCAAGAACUCUGAAGAAGAAUGG	chr2:179417392-179417639(+)$1	247	199	231	22.1100
CACACGCACGGUAGAAAACAGAUGGCUCACUA	chr2:179427974-179428276(+)$1	302	188	220	18.3146
UCAGUGGUACAUUAUCUUUAUGCCAGGUUACA	chr2:179436510-179436756(+)$1	246	79	111	20.5290
GUGGAGUAACUAUUUGCCAUUCUUCUUCAUCU	chr2:179431166-179431420(+)$1	254	74	106	23.1602
UGCCAGCCAGUCAACUUUUGGGGUGGGGCUGA	chr18:32918884-32919129(-)$1	245	178	210	21.6017
CUACAAUCUCUUGAACAAUUUGGUUGCUGGAG	chr2:186660776-186661060(-)$1	284	217	249	22.8040
AAAAGGAUUUUCCCUUUCUUUAUCUAAUUCCU	chr2:186657691-186657988(-)$1	297	47	79	23.2094
CCUAAAUCUCUGUUCCUGUUUUCUUGUUGAUU	chr3:99568181-99568420(+)$1	239	56	88	21.7253
UUUGUCACAUUUGCCUUUACGUGAUAUAAUGU	chr2:186657883-186658162(-)$1	279	128	160	21.1775
CCUCCUACUCUUUGCUCAUCUUCUCCCUGGGG	chr7:141464458-141464712(+)$1	254	92	124	23.3610
CGUGAAGAGCAUGCAUGGAAUCUUCGGCUGUG	chr3:187896807-187897072(+)$1	265	196	228	21.8346
AGUAACUCCAGUAACUUUCAGAGGCCCUUCAG	chr2:179428629-179428867(+)$1	238	80	112	22.3112
GGUGCUUCUAAUUUUUCUUCAACUAUAAUAGG	chr2:179434271-179434507(+)$1	236	64	96	23.2803
UCUGCUUCACUUACUUCCACAUUUUCAAAAUU	chr1:174417668-174417946(+)$1	278	236	268	22.5963
AUCGCCAGUUUCUCUCACCCCACAUUCCUCUG	chr7:141464134-141464386(+)$1	252	154	186	20.6565
AAACUGGUAUCCAUGUCAACACCACAUAAUUU	chr2:186656295-186656601(-)$1	306	227	259	20.4542
CUACAAUCUCUUGAACAAUUUGGUUGCUGGAG	chr2:186660639-186660891(-)$1	252	48	80	22.8040
GUUAGGUUCCUUAUCUCUCCUGAGCCUUGGGC	chr19:56188805-56189065(+)$1	260	204	236	20.7902
UUCUGAGUGUCUUCUUUCUCUACUACAGUUAU	chr2:186658456-186658721(-)$1	265	139	171	19.3313
UGCACUUGGUCCAUCUAACGCCUUCCUUAUCU	chr2:179428251-179428494(+)$1	243	49	81	20.4356
gauccugucuuuuucuuuaauuaggucuuccg	chr15:49517295-49517548(+)$1	253	82	114	21.8495
GAGUAACCUUUAUAUGAAGUGGCUGCCCAGGU	chr3:99567658-99567918(+)$1	260	139	171	19.9718
AUCUCCUUUUUCUUCUUCCCUGAGGUGAGCAG	chr19:45911588-45911841(-)$1	253	79	111	21.2802
UUGUCUGGUUCAUUUACUCUUUUCCAGUCAGU	chr2:179467093-179467351(+)$1	258	55	87	19.1755
UGUGAGAUUUCUUCCCCCUAUGACUACUCUUU	chr5:112228298-112228614(-)$1	316	38	70	22.9307
AAACAUUUAACUUAGCAGCAUGAAUCAGUUUC	chr6:132031144-132031398(+)$1	254	34	66	19.4263
UAACUGGUAAUUUUAAAGCCCCCAGUAUAUUC	chr2:179438959-179439218(+)$1	259	23	55	20.3959
CUUCUGUAUAUUUUUUCCUCUACAGUCCCACA	chrX:71426744-71426980(+)$1	236	82	114	24.5512
AAACCUGUCUUCUGUAUAUUUUUUCCUCUACA	chrX:71426787-71427062(+)$1	275	31	63	23.2392
CCUCCUACUCUUUGCUCAUCUUCUCCCUGGGG	chr7:141464397-141464658(+)$1	261	153	185	23.3610
AGACUGACUGGAAAAAUUUUGUCUGUUGUCUG	chrX:71425472-71425737(+)$1	265	231	263	21.8795
AGCCUGUAAUCAUACUUCCACCAUCAUACACA	chr2:179432351-179432590(+)$1	239	140	172	23.3461
AUGAGUAAAGAUGCUUCGGUUAUUCUAUUUCU	chr7:141478254-141478559(+)$1	305	24	56	19.2612
UUAUUGCUUUUCUUAUUUCCAUCAUUAAUAGC	chr2:186656533-186656769(-)$1	236	59	91	22.6584
AAACAUUUAACUUAGCAGCAUGAAUCAGUUUC	chr6:132031092-132031344(+)$1	252	86	118	19.4263
UUUUGCCUCUUUCUCUUUUUGGUCGGGGACAG	chr19:45912055-45912311(-)$1	256	204	236	21.8681
UAAGUGUGUUUUUUUUGUAAAUUUAGGCAAAG	chr2:186659698-186659961(-)$1	263	52	84	18.6004

#DB
...(((((.....................)))	chr7:141464186-141464426(+)$1	1	102	134	23.4507
(.(((.((............)).))))))))(	chr3:99567783-99568032(+)$1	1	14	46	21.1307
....(((...............)))....)))	chr3:99568969-99569228(+)$1	1	183	215	22.4509
((((((((............))))))))))))	chr2:179431734-179431942(+)$1	1	140	172	22.3469
((((((((...............)).))))))	chr2:179432051-179432307(+)$1	1	112	144	19.3481
(((((((.............))))))...(((	chr2:186661395-186661610(-)$1	1	136	168	17.2705
(..(((((.............)))))..))))	chr2:179428807-179429090(+)$1	1	98	130	22.7643
.((.((((...........)))).))...)))	chr2:179432154-179432421(+)$1	1	128	160	19.4273
(((.((((.....................)))	chr2:32991435-32991698(+)$1	1	143	175	23.3485
((((((((............)))).)))))))	chr2:186655992-186656237(-)$1	1	33	65	20.9730
..(((((................)))))..))	chr2:179416841-179417100(+)$1	1	145	177	22.4624
(((((.((............)).))).)))).	chr1:55352268-55352513(-)$1	1	123	155	20.6661
((.(((((............))))).))))))	chr2:179417392-179417639(+)$1	1	199	231	22.1100
(...................)))).)))))))	chr2:179427974-179428276(+)$1	1	188	220	18.3146
....(((((...........)))))))).)))	chr2:179436510-179436756(+)$1	1	79	111	20.5290
((((((((.......................)	chr2:179431166-179431420(+)$1	1	74	106	23.1602
(.(((.((............)).))).)))..	chr18:32918884-32919129(-)$1	1	178	210	21.6017
(..(((((.............)))))..))))	chr2:186660776-186661060(-)$1	1	217	249	22.8040
(..((((.....................))))	chr2:186657691-186657988(-)$1	1	47	79	23.2094
.(((((((....................))))	chr3:99568181-99568420(+)$1	1	56	88	21.7253
..((((((............)))))).))).)	chr2:186657883-186658162(-)$1	1	128	160	21.1775
((((((.......................)))	chr7:141464458-141464712(+)$1	1	92	124	23.3610
.(((((((............))))).)).)))	chr3:187896807-187897072(+)$1	1	196	228	21.8346
((...(((............)))...))...)	chr2:179428629-179428867(+)$1	1	80	112	22.3112
((.((((......................)))	chr2:179434271-179434507(+)$1	1	64	96	23.2803
.(.((...........................	chr1:174417668-174417946(+)$1	1	236	268	22.5963
...(((((.....................)))	chr7:141464134-141464386(+)$1	1	154	186	20.6565
(((.((((............)))).....)))	chr2:186656295-186656601(-)$1	1	227	259	20.4542
(..(((((.............)))))..))))	chr2:186660639-186660891(-)$1	1	48	80	22.8040
...((((((............))))))..)))	chr19:56188805-56189065(+)$1	1	204	236	20.7902
..(((((((...........)))).)))..))	chr2:186658456-186658721(-)$1	1	139	171	19.3313
...((..(((..................))).	chr2:179428251-179428494(+)$1	1	49	81	20.4356
((.((((..............))))))..)))	chr15:49517295-49517548(+)$1	1	82	114	21.8495
(.(((.((............)).))))))).(	chr3:99567658-99567918(+)$1	1	139	171	19.9718
.((.((((.............)))).))))))	chr19:45911588-45911841(-)$1	1	79	111	21.2802
.((.((((...............)))).))))	chr2:179467093-179467351(+)$1	1	55	87	19.1755
((.((((.........................	chr5:112228298-112228614(-)$1	1	38	70	22.9307
(((((((((...........)))))..)))))	chr6:132031144-132031398(+)$1	1	34	66	19.4263
((.((((..............))))))))))(	chr2:179438959-179439218(+)$1	1	23	55	20.3959
...(((((............)))))....)))	chrX:71426744-71426980(+)$1	1	82	114	24.5512
....((((.....................)))	chrX:71426787-71427062(+)$1	1	31	63	23.2392
((((((.......................)))	chr7:141464397-141464658(+)$1	1	153	185	23.3610
.(((.(((............))).)))....)	chrX:71425472-71425737(+)$1	1	231	263	21.8795
(((((((......................)))	chr2:179432351-179432590(+)$1	1	140	172	23.3461
(((((((.(((..................)))	chr7:141478254-141478559(+)$1	1	24	56	19.2612
.............................)))	chr2:186656533-186656769(-)$1	1	59	91	22.6584
(((((((((...........)))))..)))))	chr6:132031092-132031344(+)$1	1	86	118	19.4263
....(((.............))).)))))).)	chr19:45912055-45912311(-)$1	1	204	236	21.8681
(((((...............))))))))..))	chr2:186659698-186659961(-)$1	1	52	84	18.6004

#PSSM
g : 0.14	e : 0.12	# : 0.10	d : 0.10	$ : 0.06	! : 0.06	[ : 0.06	= : 0.04	i : 0.04	c : 0.04	: : 0.04	b : 0.04	" : 0.04	C : 0.02	h : 0.02	f : 0.02	% : 0.02	^ : 0.02	
g : 0.16	! : 0.14	b : 0.12	# : 0.08	[ : 0.06	e : 0.06	$ : 0.04	= : 0.04	i : 0.04	f : 0.04	d : 0.04	c : 0.04	^ : 0.04	" : 0.04	a : 0.02	: : 0.02	
g : 0.16	c : 0.12	[ : 0.12	# : 0.08	! : 0.08	b : 0.08	e : 0.06	" : 0.06	$ : 0.04	= : 0.04	i : 0.04	f : 0.04	^ : 0.04	: : 0.02	
e : 0.20	g : 0.14	c : 0.12	d : 0.12	[ : 0.10	# : 0.06	f : 0.06	= : 0.04	^ : 0.04	b : 0.04	i : 0.02	" : 0.02	$ : 0.02	
d : 0.26	e : 0.24	c : 0.14	g : 0.10	f : 0.06	= : 0.04	^ : 0.04	b : 0.04	i : 0.02	" : 0.02	[ : 0.02	
d : 0.28	e : 0.24	[ : 0.08	c : 0.08	g : 0.08	f : 0.06	^ : 0.06	= : 0.04	i : 0.02	! : 0.02	x : 0.02	
d : 0.28	e : 0.24	b : 0.10	^ : 0.10	c : 0.08	f : 0.06	= : 0.04	g : 0.04	! : 0.02	x : 0.02	
e : 0.22	^ : 0.18	d : 0.16	b : 0.10	c : 0.06	x : 0.04	= : 0.04	v : 0.04	f : 0.04	w : 0.04	y : 0.02	g : 0.02	[ : 0.02	
^ : 0.30	u : 0.26	v : 0.12	x : 0.08	e : 0.06	c : 0.04	w : 0.04	t : 0.02	y : 0.02	f : 0.02	d : 0.02	
^ : 0.30	u : 0.28	v : 0.12	t : 0.10	x : 0.08	c : 0.04	w : 0.04	y : 0.02	
^ : 0.32	u : 0.28	v : 0.12	t : 0.10	x : 0.08	w : 0.04	y : 0.02	c : 0.02	
^ : 0.34	u : 0.28	v : 0.12	t : 0.10	x : 0.08	w : 0.04	y : 0.02	
^ : 0.34	u : 0.28	v : 0.12	t : 0.10	x : 0.08	w : 0.04	y : 0.02	
^ : 0.34	u : 0.28	v : 0.12	t : 0.10	x : 0.08	w : 0.04	y : 0.02	
^ : 0.34	u : 0.28	v : 0.12	t : 0.10	x : 0.08	w : 0.04	y : 0.02	
^ : 0.34	u : 0.28	v : 0.12	t : 0.10	x : 0.08	w : 0.04	y : 0.02	
^ : 0.34	u : 0.28	v : 0.12	t : 0.10	x : 0.08	w : 0.04	y : 0.02	
^ : 0.34	u : 0.28	v : 0.12	t : 0.10	x : 0.08	w : 0.04	y : 0.02	
^ : 0.34	u : 0.28	v : 0.12	t : 0.10	x : 0.08	w : 0.04	y : 0.02	
^ : 0.34	u : 0.28	v : 0.12	x : 0.08	t : 0.08	w : 0.04	d : 0.02	y : 0.02	
^ : 0.32	e : 0.12	d : 0.10	b : 0.08	v : 0.08	x : 0.06	c : 0.06	f : 0.04	w : 0.04	= : 0.02	y : 0.02	u : 0.02	g : 0.02	
^ : 0.32	e : 0.18	d : 0.16	b : 0.08	x : 0.06	f : 0.06	c : 0.06	= : 0.02	y : 0.02	g : 0.02	
^ : 0.32	e : 0.18	d : 0.16	] : 0.08	c : 0.08	f : 0.06	x : 0.04	= : 0.02	y : 0.02	g : 0.02	
^ : 0.32	e : 0.20	d : 0.16	c : 0.10	f : 0.06	] : 0.06	= : 0.02	b : 0.02	3 : 0.02	g : 0.02	
^ : 0.32	e : 0.20	c : 0.12	f : 0.08	d : 0.08	] : 0.06	b : 0.04	= : 0.02	3 : 0.02	5 : 0.02	g : 0.02	
^ : 0.32	c : 0.14	f : 0.10	e : 0.10	] : 0.08	b : 0.06	4 : 0.04	2 : 0.04	= : 0.02	3 : 0.02	5 : 0.02	d : 0.02	g : 0.02	
^ : 0.32	2 : 0.10	b : 0.10	c : 0.08	e : 0.06	] : 0.06	f : 0.06	4 : 0.04	d : 0.04	= : 0.02	i : 0.02	: : 0.02	3 : 0.02	5 : 0.02	g : 0.02	
^ : 0.32	2 : 0.10	c : 0.10	e : 0.06	4 : 0.06	b : 0.06	= : 0.04	d : 0.04	g : 0.04	f : 0.04	i : 0.02	: : 0.02	3 : 0.02	5 : 0.02	] : 0.02	a : 0.02	
^ : 0.26	2 : 0.10	e : 0.08	d : 0.08	c : 0.08	4 : 0.06	g : 0.06	f : 0.06	= : 0.04	3 : 0.04	] : 0.04	i : 0.02	: : 0.02	5 : 0.02	b : 0.02	
c : 0.18	d : 0.18	e : 0.14	g : 0.12	f : 0.08	= : 0.06	2 : 0.06	^ : 0.06	i : 0.04	3 : 0.02	b : 0.02	4 : 0.02	
d : 0.24	c : 0.16	e : 0.14	g : 0.12	f : 0.06	^ : 0.06	i : 0.04	= : 0.04	3 : 0.04	] : 0.04	: : 0.02	4 : 0.02	
d : 0.22	c : 0.18	e : 0.14	g : 0.12	= : 0.10	i : 0.04	f : 0.04	^ : 0.04	] : 0.02	3 : 0.02	2 : 0.02	E : 0.02	b : 0.02	

#score	1051.3501827178484
#seq	49
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_CDS_m3_run2.txt

#BEAR
eeeeqqqqqqqqeee	chr11:64084212-64084438(-)$1	226	208	223	13.7689
dcccqqqqqqqqccc	chr18:43669510-43669798(-)$1	288	135	150	13.7070
ddddqqqqqqqqddd	chr15:91503041-91503292(+)$1	251	175	190	14.7592
"cccqqqqqqqqccc	chr4:39459940-39460162(-)$1	222	113	128	13.4097
eeeeqqqqqqqqeee	chrX:48433451-48433708(+)$1	257	127	142	13.7689
iiiiqqqqqqqqiii	chr10:126370528-126370895(-)$1	367	249	264	12.8025
eeeeqqqqqqqqeee	chr16:1496193-1496476(-)$1	283	201	216	13.7689
[cccqqqqqqqqccc	chr14:92583744-92584087(-)$1	343	115	130	13.5377
ddddqqqqqqqqddd	chr17:47490515-47490754(-)$1	239	23	38	14.7592
ddddqqqqqqqqddd	chr11:75111661-75111874(+)$1	213	53	68	14.7592
ddddqqqqqqqqddd	chr18:77170929-77171256(+)$1	327	299	314	14.7592
eeeeqqqqqqqqeee	chr1:93301733-93301973(+)$1	240	140	155	13.7689
eeeeqqqqqqqqeee	chr15:64791680-64791938(+)$1	258	144	159	13.7689
ddddqqqqqqqqddd	chr13:29252090-29252402(+)$1	312	243	258	14.7592
ggggqqqqqqqqggg	chr20:50139519-50139787(-)$1	268	249	264	12.7806
ddddqqqqqqqqddd	chr16:68156537-68156802(+)$1	265	240	255	14.7592
ddddqqqqqqqqddd	chr4:73957531-73957802(-)$1	271	52	67	14.7592
eeeeqqqqqqqqeee	chr16:68156620-68156870(+)$1	250	55	70	13.7689
eeeeqqqqqqqqeee	chr7:140404559-140404864(+)$1	305	24	39	13.7689
eeeeqqqqqqqqeee	chr6:74227536-74227757(-)$1	221	81	96	13.7689
ddddqqqqqqqqddd	chr7:54825163-54825388(-)$1	225	187	202	14.7592
ddddqqqqqqqqddd	chr4:73956757-73957070(-)$1	313	145	160	14.7592
[cccqqqqqqqqccc	chr11:32610055-32610302(+)$1	247	51	66	13.5377
$cccqqqqqqqqccc	chr2:55461974-55462184(+)$1	210	169	184	13.1749
[cccqqqqqqqqccc	chr11:32610039-32610255(+)$1	216	67	82	13.5377
ddddqqqqqqqqddd	chrX:48432848-48433064(+)$1	216	40	55	14.7592
ddddqqqqqqqqddd	chr21:46951271-46951552(-)$1	281	0	15	14.7592
ddddqqqqqqqqddd	chr6:26204879-26205142(+)$1	263	76	91	14.7592
ddddqqqqqqqqddd	chr9:138774658-138775023(-)$1	365	16	31	14.7592
[cccqqqqqqqqccc	chr2:74689005-74689258(-)$1	253	71	86	13.5377
ddddqqqqqqqqddd	chr16:68156102-68156408(+)$1	306	44	59	14.7592
eeeeqqqqqqqqeee	chr7:135333155-135333470(+)$1	315	55	70	13.7689
[cccqqqqqqqqccc	chr9:130929003-130929253(-)$1	250	170	185	13.5377
ddddqqqqqqqqddd	chr4:73950929-73951201(-)$1	272	156	171	14.7592
ddddqqqqqqqqddd	chr1:182856406-182856640(+)$1	234	155	170	14.7592
ddddqqqqqqqqddd	chr11:75111674-75111894(+)$1	220	40	55	14.7592
:cccqqqqqqqqccc	chr6:4892091-4892378(+)$1	287	68	83	12.4703
[cccqqqqqqqqccc	chr1:27059066-27059368(+)$1	302	265	280	13.5377
ddddqqqqqqqqddd	chr21:34925898-34926172(+)$1	274	231	246	14.7592
ddddqqqqqqqqddd	chr16:21991788-21992083(+)$1	295	163	178	14.7592
[cccqqqqqqqqccc	chr9:125048224-125048526(+)$1	302	35	50	13.5377
eeeeqqqqqqqqeee	chr12:98995189-98995463(+)$1	274	204	219	13.7689
ddddqqqqqqqqddd	chr10:102289466-102289722(-)$1	256	238	253	14.7592
ddddqqqqqqqqddd	chr6:159010603-159010882(+)$1	279	144	159	14.7592
eeeeqqqqqqqqeee	chr15:49575691-49576013(+)$1	322	183	198	13.7689
ddddqqqqqqqqddd	chr16:89167001-89167249(+)$1	248	222	237	14.7592
ddddqqqqqqqqddd	chr1:182856458-182856797(+)$1	339	103	118	14.7592
ddddqqqqqqqqddd	chr8:101727690-101727927(-)$1	237	134	149	14.7592
ddddqqqqqqqqddd	chr12:98994911-98995157(+)$1	246	118	133	14.7592
iiiiqqqqqqqqiii	chr18:43664369-43664630(-)$1	261	20	35	12.8025
ddddqqqqqqqqddd	chr12:98994886-98995111(+)$1	225	14	29	14.7592
eeeeqqqqqqqqeee	chr18:43669702-43670023(-)$1	321	222	237	13.7689
[cccqqqqqqqqccc	chr7:56147395-56147647(+)$1	252	12	27	13.5377
ddddqqqqqqqqddd	chr13:27827854-27828079(+)$1	225	189	204	14.7592
!cccqqqqqqqqccc	chr8:42262870-42263177(+)$1	307	161	176	13.5450
eeeeqqqqqqqqeee	chr6:74227652-74227854(-)$1	202	178	193	13.7689
eeeeqqqqqqqqeee	chr6:44084177-44084447(-)$1	270	102	117	13.7689
ddddqqqqqqqqddd	chr1:161183859-161184116(+)$1	257	24	39	14.7592
bcccqqqqqqqqccc	chr3:49052847-49053172(+)$1	325	169	184	13.1366
dddaqqqqqqqqa]d	chr12:57881774-57882070(+)$1	296	245	260	13.7120
ddddqqqqqqqqddd	chr2:47606942-47607208(+)$1	266	60	75	14.7592
eeeeqqqqqqqqeee	chr12:96254839-96255156(+)$1	317	20	35	13.7689
fcccqqqqqqqqccc	chr1:32498741-32498992(+)$1	251	84	99	13.3144
ggggqqqqqqqqggg	chr11:85692875-85693141(-)$1	266	180	195	12.7806
ddddqqqqqqqqddd	chr20:60962337-60962544(+)$1	207	37	52	14.7592
eeeeqqqqqqqqeee	chr17:16285119-16285330(+)$1	211	95	110	13.7689

#otherMatches

#Seq PSSM
ACACCAAACACAGUG	chr11:64084212-64084438(-)$1	226	208	223	13.7689
UCUGAAAGCCCCCGG	chr18:43669510-43669798(-)$1	288	135	150	13.7070
UCGCAAGGGAAGGUG	chr15:91503041-91503292(+)$1	251	175	190	14.7592
UUCUCAGCAAUCAGA	chr4:39459940-39460162(-)$1	222	113	128	13.4097
AAGAAGGAAAGCUCU	chrX:48433451-48433708(+)$1	257	127	142	13.7689
UGCUACAGCGGGGGC	chr10:126370528-126370895(-)$1	367	249	264	12.8025
UGAGACAGAGCCCUU	chr16:1496193-1496476(-)$1	283	201	216	13.7689
UUACUUCAGAUUGUG	chr14:92583744-92584087(-)$1	343	115	130	13.5377
UGACUGUUGUGUGUC	chr17:47490515-47490754(-)$1	239	23	38	14.7592
GAACUUUGCUUUGUU	chr11:75111661-75111874(+)$1	213	53	68	14.7592
GCUGACCACCGACAG	chr18:77170929-77171256(+)$1	327	299	314	14.7592
CCAGAACUACCACUG	chr1:93301733-93301973(+)$1	240	140	155	13.7689
AGACAACAUCAAGUU	chr15:64791680-64791938(+)$1	258	144	159	13.7689
UGAGAAUUUCUGCUC	chr13:29252090-29252402(+)$1	312	243	258	14.7592
ucagguuuaagacug	chr20:50139519-50139787(-)$1	268	249	264	12.7806
GUGUAGAGACUGACA	chr16:68156537-68156802(+)$1	265	240	255	14.7592
CAUUAAGAACCCAGU	chr4:73957531-73957802(-)$1	271	52	67	14.7592
CUGGUCACUCCCCCA	chr16:68156620-68156870(+)$1	250	55	70	13.7689
GAUUUAUUUAACAAU	chr7:140404559-140404864(+)$1	305	24	39	13.7689
UUAACUUUUUUUUUA	chr6:74227536-74227757(-)$1	221	81	96	13.7689
ACCUGAUAGAAAAGG	chr7:54825163-54825388(-)$1	225	187	202	14.7592
AGCAACAAGUUCUGC	chr4:73956757-73957070(-)$1	313	145	160	14.7592
UCACUGUUGAUUGUG	chr11:32610055-32610302(+)$1	247	51	66	13.5377
UGGAAAACUUAAUCU	chr2:55461974-55462184(+)$1	210	169	184	13.1749
UCACUGUUGAUUGUG	chr11:32610039-32610255(+)$1	216	67	82	13.5377
GCAGCCCCGUCCCUG	chrX:48432848-48433064(+)$1	216	40	55	14.7592
CCAGGCGGGAAGCUG	chr21:46951271-46951552(-)$1	281	0	15	14.7592
GGGCAUUACCAAGCC	chr6:26204879-26205142(+)$1	263	76	91	14.7592
cagucauaguucacu	chr9:138774658-138775023(-)$1	365	16	31	14.7592
ACCCUACCCUCUGGG	chr2:74689005-74689258(-)$1	253	71	86	13.5377
CAUCAAGAAUUAGAU	chr16:68156102-68156408(+)$1	306	44	59	14.7592
UGAAGGAUUAUAUUC	chr7:135333155-135333470(+)$1	315	55	70	13.7689
ACAGCUCUCCCACUG	chr9:130929003-130929253(-)$1	250	170	185	13.5377
AGCACCCGCAGCUGC	chr4:73950929-73951201(-)$1	272	156	171	14.7592
GCUAUUAAAACUUGG	chr1:182856406-182856640(+)$1	234	155	170	14.7592
GAACUUUGCUUUGUU	chr11:75111674-75111894(+)$1	220	40	55	14.7592
AGGAAACAAAUCUCC	chr6:4892091-4892378(+)$1	287	68	83	12.4703
CAAUGCAAACUAGUU	chr1:27059066-27059368(+)$1	302	265	280	13.5377
UAUAGACCUUAAUAU	chr21:34925898-34926172(+)$1	274	231	246	14.7592
UGGUUCUUACAUGCC	chr16:21991788-21992083(+)$1	295	163	178	14.7592
UUAUGAUUUUAAGUG	chr9:125048224-125048526(+)$1	302	35	50	13.5377
GGAAAUUGUCUAUUC	chr12:98995189-98995463(+)$1	274	204	219	13.7689
UACCUGAAAUUUGGU	chr10:102289466-102289722(-)$1	256	238	253	14.7592
CACUCAGUAUACAGU	chr6:159010603-159010882(+)$1	279	144	159	14.7592
AUUUCAAUAUCAGGG	chr15:49575691-49576013(+)$1	322	183	198	13.7689
GGUGUUCACCCGUGC	chr16:89167001-89167249(+)$1	248	222	237	14.7592
GCUAUUAAAACUUGG	chr1:182856458-182856797(+)$1	339	103	118	14.7592
AGCUGAACUUGGAGC	chr8:101727690-101727927(-)$1	237	134	149	14.7592
CUCUGGUCCUCAAGA	chr12:98994911-98995157(+)$1	246	118	133	14.7592
UAUUGAAGAACAAGU	chr18:43664369-43664630(-)$1	261	20	35	12.8025
AGUUUUGUUUUUAAC	chr12:98994886-98995111(+)$1	225	14	29	14.7592
UAUUGAUGGAAAGGU	chr18:43669702-43670023(-)$1	321	222	237	13.7689
AAAGAACUUCCCCUU	chr7:56147395-56147647(+)$1	252	12	27	13.5377
UGUGUUGUAGUUCAU	chr13:27827854-27828079(+)$1	225	189	204	14.7592
CCCACUAUGUUUUGG	chr8:42262870-42263177(+)$1	307	161	176	13.5450
UUAACUUUUUUUUUA	chr6:74227652-74227854(-)$1	202	178	193	13.7689
GCUUUCUUUACUGGG	chr6:44084177-44084447(-)$1	270	102	117	13.7689
UUGUUUUGCCUCACA	chr1:161183859-161184116(+)$1	257	24	39	14.7592
GGCCUUAAAUGUGGC	chr3:49052847-49053172(+)$1	325	169	184	13.1366
GCGGGACCGAAACAC	chr12:57881774-57882070(+)$1	296	245	260	13.7120
UGUUGAUGAAAAAGC	chr2:47606942-47607208(+)$1	266	60	75	14.7592
ACCACAAAAUAUUGG	chr12:96254839-96255156(+)$1	317	20	35	13.7689
CCCACUUGAAUAUGG	chr1:32498741-32498992(+)$1	251	84	99	13.3144
GUUAGUAUCUGAUGA	chr11:85692875-85693141(-)$1	266	180	195	12.7806
AGGCGCAGCCCAGCC	chr20:60962337-60962544(+)$1	207	37	52	14.7592
GGUCAAAAUGCAGAU	chr17:16285119-16285330(+)$1	211	95	110	13.7689

#DB
((((........)))	chr11:64084212-64084438(-)$1	1	208	223	13.7689
((((........)))	chr18:43669510-43669798(-)$1	1	135	150	13.7070
((((........)))	chr15:91503041-91503292(+)$1	1	175	190	14.7592
.(((........)))	chr4:39459940-39460162(-)$1	1	113	128	13.4097
((((........)))	chrX:48433451-48433708(+)$1	1	127	142	13.7689
((((........)))	chr10:126370528-126370895(-)$1	1	249	264	12.8025
((((........)))	chr16:1496193-1496476(-)$1	1	201	216	13.7689
.(((........)))	chr14:92583744-92584087(-)$1	1	115	130	13.5377
((((........)))	chr17:47490515-47490754(-)$1	1	23	38	14.7592
((((........)))	chr11:75111661-75111874(+)$1	1	53	68	14.7592
((((........)))	chr18:77170929-77171256(+)$1	1	299	314	14.7592
((((........)))	chr1:93301733-93301973(+)$1	1	140	155	13.7689
((((........)))	chr15:64791680-64791938(+)$1	1	144	159	13.7689
((((........)))	chr13:29252090-29252402(+)$1	1	243	258	14.7592
((((........)))	chr20:50139519-50139787(-)$1	1	249	264	12.7806
((((........)))	chr16:68156537-68156802(+)$1	1	240	255	14.7592
((((........)))	chr4:73957531-73957802(-)$1	1	52	67	14.7592
((((........)))	chr16:68156620-68156870(+)$1	1	55	70	13.7689
((((........)))	chr7:140404559-140404864(+)$1	1	24	39	13.7689
((((........)))	chr6:74227536-74227757(-)$1	1	81	96	13.7689
((((........)))	chr7:54825163-54825388(-)$1	1	187	202	14.7592
((((........)))	chr4:73956757-73957070(-)$1	1	145	160	14.7592
.(((........)))	chr11:32610055-32610302(+)$1	1	51	66	13.5377
.(((........)))	chr2:55461974-55462184(+)$1	1	169	184	13.1749
.(((........)))	chr11:32610039-32610255(+)$1	1	67	82	13.5377
((((........)))	chrX:48432848-48433064(+)$1	1	40	55	14.7592
((((........)))	chr21:46951271-46951552(-)$1	1	0	15	14.7592
((((........)))	chr6:26204879-26205142(+)$1	1	76	91	14.7592
((((........)))	chr9:138774658-138775023(-)$1	1	16	31	14.7592
.(((........)))	chr2:74689005-74689258(-)$1	1	71	86	13.5377
((((........)))	chr16:68156102-68156408(+)$1	1	44	59	14.7592
((((........)))	chr7:135333155-135333470(+)$1	1	55	70	13.7689
.(((........)))	chr9:130929003-130929253(-)$1	1	170	185	13.5377
((((........)))	chr4:73950929-73951201(-)$1	1	156	171	14.7592
((((........)))	chr1:182856406-182856640(+)$1	1	155	170	14.7592
((((........)))	chr11:75111674-75111894(+)$1	1	40	55	14.7592
.(((........)))	chr6:4892091-4892378(+)$1	1	68	83	12.4703
.(((........)))	chr1:27059066-27059368(+)$1	1	265	280	13.5377
((((........)))	chr21:34925898-34926172(+)$1	1	231	246	14.7592
((((........)))	chr16:21991788-21992083(+)$1	1	163	178	14.7592
.(((........)))	chr9:125048224-125048526(+)$1	1	35	50	13.5377
((((........)))	chr12:98995189-98995463(+)$1	1	204	219	13.7689
((((........)))	chr10:102289466-102289722(-)$1	1	238	253	14.7592
((((........)))	chr6:159010603-159010882(+)$1	1	144	159	14.7592
((((........)))	chr15:49575691-49576013(+)$1	1	183	198	13.7689
((((........)))	chr16:89167001-89167249(+)$1	1	222	237	14.7592
((((........)))	chr1:182856458-182856797(+)$1	1	103	118	14.7592
((((........)))	chr8:101727690-101727927(-)$1	1	134	149	14.7592
((((........)))	chr12:98994911-98995157(+)$1	1	118	133	14.7592
((((........)))	chr18:43664369-43664630(-)$1	1	20	35	12.8025
((((........)))	chr12:98994886-98995111(+)$1	1	14	29	14.7592
((((........)))	chr18:43669702-43670023(-)$1	1	222	237	13.7689
.(((........)))	chr7:56147395-56147647(+)$1	1	12	27	13.5377
((((........)))	chr13:27827854-27828079(+)$1	1	189	204	14.7592
.(((........)))	chr8:42262870-42263177(+)$1	1	161	176	13.5450
((((........)))	chr6:74227652-74227854(-)$1	1	178	193	13.7689
((((........)))	chr6:44084177-44084447(-)$1	1	102	117	13.7689
((((........)))	chr1:161183859-161184116(+)$1	1	24	39	14.7592
((((........)))	chr3:49052847-49053172(+)$1	1	169	184	13.1366
((((........).)	chr12:57881774-57882070(+)$1	1	245	260	13.7120
((((........)))	chr2:47606942-47607208(+)$1	1	60	75	14.7592
((((........)))	chr12:96254839-96255156(+)$1	1	20	35	13.7689
((((........)))	chr1:32498741-32498992(+)$1	1	84	99	13.3144
((((........)))	chr11:85692875-85693141(-)$1	1	180	195	12.7806
((((........)))	chr20:60962337-60962544(+)$1	1	37	52	14.7592
((((........)))	chr17:16285119-16285330(+)$1	1	95	110	13.7689

#PSSM
d : 0.48	e : 0.24	[ : 0.12	i : 0.03	g : 0.03	" : 0.01	$ : 0.01	: : 0.01	! : 0.01	b : 0.01	f : 0.01	
d : 0.46	e : 0.24	c : 0.22	i : 0.03	g : 0.03	
d : 0.46	e : 0.24	c : 0.22	i : 0.03	g : 0.03	
d : 0.45	e : 0.24	c : 0.22	i : 0.03	g : 0.03	a : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.45	e : 0.24	c : 0.22	i : 0.03	g : 0.03	a : 0.01	
d : 0.45	e : 0.24	c : 0.22	i : 0.03	g : 0.03	] : 0.01	
d : 0.46	e : 0.24	c : 0.22	i : 0.03	g : 0.03	

#score	929.0182724903717
#seq	66
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565RQI_SSB_UTR_m2_run2.txt

#BEAR
:dddd!!ccc"""ddddmmmmdddd]ccc22dddd	chr6:43752772-43753018(+)$1	246	38	73	22.2588
:ddddggggggg####ammmma4444ggggggg22	chr17:8076801-8077006(-)$1	205	69	104	21.7839
eeeee!!ccc####cccmmmmccc4444ccc]eee	chr11:10529788-10530052(-)$1	264	185	220	23.2143

#otherMatches

#Seq PSSM
GUUCCCACUCAGAUCCUGACAGGGAAGAGGAGGAG	chr6:43752772-43753018(+)$1	246	38	73	22.2588
ACUGAGUGCAGAAUGUCGGCUGUUUGUCUGUaucg	chr17:8076801-8077006(-)$1	205	69	104	21.7839
ACCGCCUGCCCAGUGACAUGCGUUUaacggccgcg	chr11:10529788-10530052(-)$1	264	185	220	23.2143

#DB
.((((..(((...((((....)))).)))..))))	chr6:43752772-43753018(+)$1	1	38	73	22.2588
.(((((((((((....(....)....)))))))..	chr17:8076801-8077006(-)$1	1	69	104	21.7839
(((((..(((....(((....)))....))).)))	chr11:10529788-10530052(-)$1	1	185	220	23.2143

#PSSM
: : 0.66	e : 0.33	
d : 0.66	e : 0.33	
d : 0.66	e : 0.33	
d : 0.66	e : 0.33	
d : 0.66	e : 0.33	
! : 0.66	g : 0.33	
! : 0.66	g : 0.33	
c : 0.66	g : 0.33	
c : 0.66	g : 0.33	
c : 0.66	g : 0.33	
" : 0.33	g : 0.33	# : 0.33	
" : 0.33	g : 0.33	# : 0.33	
# : 0.66	" : 0.33	
# : 0.66	d : 0.33	
d : 0.33	# : 0.33	c : 0.33	
d : 0.33	# : 0.33	c : 0.33	
d : 0.33	a : 0.33	c : 0.33	
m : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
d : 0.33	a : 0.33	c : 0.33	
d : 0.33	4 : 0.33	c : 0.33	
d : 0.33	4 : 0.33	c : 0.33	
4 : 0.66	d : 0.33	
4 : 0.66	] : 0.33	
c : 0.33	g : 0.33	4 : 0.33	
c : 0.33	g : 0.33	4 : 0.33	
c : 0.66	g : 0.33	
2 : 0.33	g : 0.33	c : 0.33	
2 : 0.33	g : 0.33	c : 0.33	
d : 0.33	g : 0.33	] : 0.33	
d : 0.33	g : 0.33	e : 0.33	
d : 0.33	2 : 0.33	e : 0.33	
d : 0.33	2 : 0.33	e : 0.33	

#score	67.25719634113331
#seq	3
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_transcript_m3_run2.txt

#BEAR
b[gggggggcccooooooccc22gggg	chr5:71516464-71516838(-)$1	374	291	318	15.3731
[eeeeea!!cccooooooccc22a]ee	chr2:102794538-102794847(+)$1	309	146	173	15.9813
"aeeeee!!cccooooooccc22eeee	chr15:99500671-99500930(+)$1	259	15	42	15.5696
ccc[a"""ddddoooooodddd333a]	chr19:50002698-50002925(+)$1	227	49	76	14.9154
#eeeee"""cccooooooccc22eeee	chr19:36640645-36640958(+)$1	313	209	236	16.1452
eeeee[ccc[bboooooobb]ccc333	chr14:31569606-31569895(-)$1	289	89	116	14.0092
[dddd"""ddddoooooodddd333dd	chr3:150260663-150260965(-)$1	302	237	264	14.3594
::==========oooooo=========	chr13:113538550-113538801(+)$1	251	164	191	13.2091
gggggccc[cccoooooocccccc22g	chr12:57107219-57107438(-)$1	219	126	153	15.0649
i!!ccc####bboooooobb333ccci	chr7:94296589-94296832(+)$1	243	70	97	15.6845
##eeeee!!cccooooooccceeeee5	chr4:129192256-129192560(-)$1	304	259	286	14.2773
ggggccc"""bboooooobb4444ccc	chr19:49426342-49426579(+)$1	237	145	172	14.8636
cc::gggggggaooooooa]ggggggg	chr2:135926494-135926829(+)$1	335	134	161	11.6772
eeeee####cccooooooccc22eeee	chr12:53856164-53856397(+)$1	233	140	167	16.1442
==========[aooooooa]=======	chr2:54895953-54896188(+)$1	235	62	89	14.9513
cccccc!!ddddoooooodddd]ccc:	chr16:68225047-68225320(+)$1	273	189	216	12.9590
eeeeaaffffffooooooffffff444	chr22:38271820-38272099(+)$1	279	133	160	12.2522
eeeee!!eeeeeooooooeeeeeeeee	chr11:126132857-126133120(-)$1	263	128	155	12.5012
Eccc[gggggggoooooogggggggcc	chr6:7586191-7586451(+)$1	260	7	34	12.8184
e:ccc!!eeeeeooooooeeeee333c	chrX:71495297-71495546(-)$1	249	85	112	12.4198
d!!dddd"""bboooooobb]dddd22	chr2:21233930-21234161(-)$1	231	135	162	13.0797
==####dddd[aooooooa]dddd444	chr19:583198-583433(+)$1	235	100	127	12.8386
[ggggggg[cccooooooccc22gggg	chr2:21229672-21229923(-)$1	251	114	141	16.0617
a[dddd"""cccoooooocccdddd]a	chr7:94295940-94296194(+)$1	254	155	182	15.0949
iiiiiiii"""ccclllccc333iiii	chr12:46752597-46752851(-)$1	254	100	127	10.6669
fffff!!bbcccooooooccc]bb22f	chr2:21228617-21228844(-)$1	227	131	158	13.7889
fffff####cccnnnnnccc333ffff	chr2:21228037-21228255(-)$1	218	168	195	10.8969
eeeee####cccooooooccc22eeee	chr6:37142037-37142299(+)$1	262	169	196	16.1442
"""iiiiiiiiiooooooiiiiiiiii	chr2:208629373-208629639(-)$1	266	224	251	14.5759
##ccc####cccooooooccc22ccc2	chr18:47017062-47017294(-)$1	232	9	36	16.7013
""bb[ccc[cccoooooocccccc]bb	chr6:52364410-52364640(-)$1	230	117	144	14.2239
dccc####ddddoooooodddd4444c	chr13:45914105-45914376(-)$1	271	226	253	14.3205
"ccc####ddddoooooodddd333cc	chr13:30088128-30088380(-)$1	252	92	119	14.9917
a[eeeeea[cccooooooccc]a]eee	chr12:76423734-76423970(-)$1	236	14	41	15.1901
eccc[ccc[cccooooooccc]ccc22	chr6:111215051-111215344(+)$1	293	58	85	15.1653
a!!dddd!!cccooooooccc777777	chr14:95059073-95059321(+)$1	248	167	194	12.2133
eeeiiiiiiiiiooooooiiiiiiiii	chr2:216225980-216226184(-)$1	204	166	193	14.2413
==[ffffff[bboooooobbffffff]	chr9:80944359-80944607(+)$1	248	19	46	12.3434
ggggggbb[cccooooooccc]bb333	chr7:103197339-103197587(-)$1	248	20	47	15.1054
[ccc"""eeeeeooooooeeeee]ccc	chr19:49468561-49468786(+)$1	225	30	57	13.1997
:ggggggg!!bboooooobb22ggggg	chr11:69468181-69468440(+)$1	259	21	48	13.3847
============oooooo=========	chr8:22275132-22275395(+)$1	263	178	205	15.2091
[eeeee!!a[bboooooobb]a22eee	chr1:228285654-228285929(+)$1	275	54	81	14.1775
:ddddccc!!bboooooobb22ccc]d	chr19:47503748-47504028(+)$1	280	34	61	12.4741
!!ccc!!cccaooooooa]ccc]cccg	chr20:49509820-49510116(-)$1	296	235	262	13.8926
ffffff"""cccoooooocccffffff	chr19:54376818-54377078(+)$1	260	194	221	14.6658
!!ffffff[cccooooooccc]fffff	chr4:1019480-1019806(+)$1	326	58	85	14.4880
hhhhhhhh[cccooooooccc]hhhhh	chr2:216251499-216251728(-)$1	229	14	41	12.7882
!dddd"""ddddoooooodddddddd3	chr2:21228893-21229111(-)$1	218	129	156	13.4558
ff[bb####cccooooooccc333bb]	chr22:38247317-38247562(+)$1	245	87	114	15.6933
ggggg[bb[cccoooooocccbb22gg	chr14:69256315-69256590(-)$1	275	205	232	14.2713

#otherMatches

#Seq PSSM
CAGGUGGCUAGUGGUCAGACUGAAGUC	chr5:71516464-71516838(-)$1	374	291	318	15.3731
UUCUCUCUCUGGUCAGGCCCACUGCAG	chr2:102794538-102794847(+)$1	309	146	173	15.9813
UCUGUGCAAACAGUAACGUGUGCGCAC	chr15:99500671-99500930(+)$1	259	15	42	15.5696
UGGCCCUACCUGCCUCCACAGGGACGU	chr19:50002698-50002925(+)$1	227	49	76	14.9154
CACAAGCUUUUGUUCUCUCAGUACUUG	chr19:36640645-36640958(+)$1	313	209	236	16.1452
GUGUAAAGUUUGUCAUUUCAUACUCCA	chr14:31569606-31569895(-)$1	289	89	116	14.0092
CAGGUUUUUAACUAAAUUGUUACUUGC	chr3:150260663-150260965(-)$1	302	237	264	14.3594
UAGUGUGAAAGUCACUAAACUUUUACA	chr13:113538550-113538801(+)$1	251	164	191	13.2091
ACUUUUCUUGGGCAUUGUUCCAGACca	chr12:57107219-57107438(-)$1	219	126	153	15.0649
GCAGUAGAAAACAACAUGGUGUAUAUC	chr7:94296589-94296832(+)$1	243	70	97	15.6845
AUGCUGCCAAACUCAUUUGUUGCAGUU	chr4:129192256-129192560(-)$1	304	259	286	14.2773
UCCAUGUUCCGGUUCCAUCCAAAUACA	chr19:49426342-49426579(+)$1	237	145	172	14.8636
CACUCCGUCCUCACACUGGCAGGACGG	chr2:135926494-135926829(+)$1	335	134	161	11.6772
ACCGGCCCAAGCCGUCCAGCUCUCCGG	chr12:53856164-53856397(+)$1	233	140	167	16.1442
AGUGCUGUUGGUAUGCAAGGCAGCGGU	chr2:54895953-54896188(+)$1	235	62	89	14.9513
ACAGGACAAAGAUCUCUUUCUUCUCCA	chr16:68225047-68225320(+)$1	273	189	216	12.9590
ACAUCCUCCUCUACAUCCAGAGGACCA	chr22:38271820-38272099(+)$1	279	133	160	12.2522
CAGUGCCUGGUAGACAAGUGCUACAUU	chr11:126132857-126133120(-)$1	263	128	155	12.5012
UGCAGUAGAGUGAUAGGACAUUCUAUG	chr6:7586191-7586451(+)$1	260	7	34	12.8184
CAUGCAGCGGUUCAUUAAAAUCGAUGG	chrX:71495297-71495546(-)$1	249	85	112	12.4198
UGACCAUCGAUGCACAUACAAAUGGCA	chr2:21233930-21234161(-)$1	231	135	162	13.0797
CCUUGUCUGUGCAUCCGGGGGCAGCUC	chr19:583198-583433(+)$1	235	100	127	12.8386
AGAAAUCUCAAGCUUUCUCUUCCAGAU	chr2:21229672-21229923(-)$1	251	114	141	16.0617
CUCAUUAGACUGUAGCAUUAGGAUGUG	chr7:94295940-94296194(+)$1	254	155	182	15.0949
CUAGGGAAAAUUCCAAUGGAUGAUUUU	chr12:46752597-46752851(-)$1	254	100	127	10.6669
UCCUACCAGUCUAUGACAAGAGCUUAU	chr2:21228617-21228844(-)$1	227	131	158	13.7889
GCACGCUUUGAGGUAGACUCUCCCGUG	chr2:21228037-21228255(-)$1	218	168	195	10.8969
CUGCUGAAUGCCGCGAUGGGUCAGGUA	chr6:37142037-37142299(+)$1	262	169	196	16.1442
GGAUGAAAGUGAUUUAAUUCAUUUUUA	chr2:208629373-208629639(-)$1	266	224	251	14.5759
ACUGCUCAGGCCAUCAAGGGUAUGCAU	chr18:47017062-47017294(-)$1	232	9	36	16.7013
CACGUUCACAGAUCCUUCUCUUGACCG	chr6:52364410-52364640(-)$1	230	117	144	14.2239
ACAUCAAAGAUUACAUGAAAUCGUAAG	chr13:45914105-45914376(-)$1	271	226	253	14.3205
ACCUUCUCUCCUUAUCUUGGGAACCAG	chr13:30088128-30088380(-)$1	252	92	119	14.9917
GCUUUGUCAGGCGGACUGGCCCGAACA	chr12:76423734-76423970(-)$1	236	14	41	15.1901
UUGUGAAAGCAACUCAAUUUGGUUUAU	chr6:111215051-111215344(+)$1	293	58	85	15.1653
CAUCCUUUAAGAAAAACAUCUGGAUAU	chr14:95059073-95059321(+)$1	248	167	194	12.2133
AGUGAUUCUAAGAUUUGGUUUGGGAUC	chr2:216225980-216226184(-)$1	204	166	193	14.2413
CUCUAGGUGCUGAAUCUACACAUCUGU	chr9:80944359-80944607(+)$1	248	19	46	12.3434
CCAUCAGUGGAGGAAUCACUUGGCACC	chr7:103197339-103197587(-)$1	248	20	47	15.1054
CUCUUGCUUCAACAGUGUUUGGACGGA	chr19:49468561-49468786(+)$1	225	30	57	13.1997
UGUGAUCAAUUUUGACUUAAUGUGAUU	chr11:69468181-69468440(+)$1	259	21	48	13.3847
CUGGAGGAAUGUUCUUGUAUAUUUCUC	chr8:22275132-22275395(+)$1	263	178	205	15.2091
AAGUGAACGCGACCCCCCUCCCUCUCA	chr1:228285654-228285929(+)$1	275	54	81	14.1775
CGCCAGGCCCAGCUCCCCCUCUGCCGU	chr19:47503748-47504028(+)$1	280	34	61	12.4741
CUGAAAAUGUCUAUAGUGUGCACUUCG	chr20:49509820-49510116(-)$1	296	235	262	13.8926
CCGUGACCCUGAUCAUCCUCAUCGUGG	chr19:54376818-54377078(+)$1	260	194	221	14.6658
GCUGUCUGGACGCACACACGUGCAGAU	chr4:1019480-1019806(+)$1	326	58	85	14.4880
UUUUUCUCUUCCUCCCCCGGGUGGGAA	chr2:216251499-216251728(-)$1	229	14	41	12.7882
AGCCACCCUGGAACUCUCUCCAUGGCA	chr2:21228893-21229111(-)$1	218	129	156	13.4558
UGACCAGAAAGUGUAUGAGCUACAGGC	chr22:38247317-38247562(+)$1	245	87	114	15.6933
CCCUCAGGAUUCUCUCUCGGACCAGGA	chr14:69256315-69256590(-)$1	275	205	232	14.2713

#DB
(.((((((((((......)))..))))	chr5:71516464-71516838(-)$1	1	291	318	15.3731
.((((((..(((......)))..).))	chr2:102794538-102794847(+)$1	1	146	173	15.9813
.((((((..(((......)))..))))	chr15:99500671-99500930(+)$1	1	15	42	15.5696
(((.(...((((......))))...).	chr19:50002698-50002925(+)$1	1	49	76	14.9154
.(((((...(((......)))..))))	chr19:36640645-36640958(+)$1	1	209	236	16.1452
(((((.(((.((......)).)))...	chr14:31569606-31569895(-)$1	1	89	116	14.0092
.((((...((((......))))...))	chr3:150260663-150260965(-)$1	1	237	264	14.3594
..((((((((((......)))))))))	chr13:113538550-113538801(+)$1	1	164	191	13.2091
((((((((.(((......))))))..)	chr12:57107219-57107438(-)$1	1	126	153	15.0649
(..(((....((......))...))))	chr7:94296589-94296832(+)$1	1	70	97	15.6845
..(((((..(((......)))))))).	chr4:129192256-129192560(-)$1	1	259	286	14.2773
(((((((...((......))....)))	chr19:49426342-49426579(+)$1	1	145	172	14.8636
))..((((((((......).)))))))	chr2:135926494-135926829(+)$1	1	134	161	11.6772
(((((....(((......)))..))))	chr12:53856164-53856397(+)$1	1	140	167	16.1442
((((((((((.(......).)))))))	chr2:54895953-54896188(+)$1	1	62	89	14.9513
)))(((..((((......)))).))).	chr16:68225047-68225320(+)$1	1	189	216	12.9590
((((((((((((......))))))...	chr22:38271820-38272099(+)$1	1	133	160	12.2522
(((((..(((((......)))))))))	chr11:126132857-126133120(-)$1	1	128	155	12.5012
((((.(((((((......)))))))))	chr6:7586191-7586451(+)$1	1	7	34	12.8184
).(((..(((((......)))))...)	chrX:71495297-71495546(-)$1	1	85	112	12.4198
(..((((...((......)).))))..	chr2:21233930-21234161(-)$1	1	135	162	13.0797
((....((((.(......).))))...	chr19:583198-583433(+)$1	1	100	127	12.8386
.(((((((.(((......)))..))))	chr2:21229672-21229923(-)$1	1	114	141	16.0617
(.((((...(((......))))))).)	chr7:94295940-94296194(+)$1	1	155	182	15.0949
((((((((...(((...)))...))))	chr12:46752597-46752851(-)$1	1	100	127	10.6669
(((((..(((((......))).))..)	chr2:21228617-21228844(-)$1	1	131	158	13.7889
(((((....(((.....)))...))))	chr2:21228037-21228255(-)$1	1	168	195	10.8969
(((((....(((......)))..))))	chr6:37142037-37142299(+)$1	1	169	196	16.1442
...(((((((((......)))))))))	chr2:208629373-208629639(-)$1	1	224	251	14.5759
..(((....(((......)))..))).	chr18:47017062-47017294(-)$1	1	9	36	16.7013
..((.(((.(((......)))))).))	chr6:52364410-52364640(-)$1	1	117	144	14.2239
((((....((((......))))....)	chr13:45914105-45914376(-)$1	1	226	253	14.3205
.(((....((((......))))...))	chr13:30088128-30088380(-)$1	1	92	119	14.9917
(.((((((.(((......))).).)))	chr12:76423734-76423970(-)$1	1	14	41	15.1901
((((.(((.(((......))).)))..	chr6:111215051-111215344(+)$1	1	58	85	15.1653
(..((((..(((......)))......	chr14:95059073-95059321(+)$1	1	167	194	12.2133
)))(((((((((......)))))))))	chr2:216225980-216226184(-)$1	1	166	193	14.2413
((.((((((.((......)))))))).	chr9:80944359-80944607(+)$1	1	19	46	12.3434
((((((((.(((......))).))...	chr7:103197339-103197587(-)$1	1	20	47	15.1054
.(((...(((((......))))).)))	chr19:49468561-49468786(+)$1	1	30	57	13.1997
.(((((((..((......))..)))))	chr11:69468181-69468440(+)$1	1	21	48	13.3847
((((((((((((......)))))))))	chr8:22275132-22275395(+)$1	1	178	205	15.2091
.(((((..(.((......)).)..)))	chr1:228285654-228285929(+)$1	1	54	81	14.1775
.(((((((..((......))..))).)	chr19:47503748-47504028(+)$1	1	34	61	12.4741
..(((..((((......).))).))))	chr20:49509820-49510116(-)$1	1	235	262	13.8926
((((((...(((......)))))))))	chr19:54376818-54377078(+)$1	1	194	221	14.6658
..((((((.(((......))).)))))	chr4:1019480-1019806(+)$1	1	58	85	14.4880
((((((((.(((......))).)))))	chr2:216251499-216251728(-)$1	1	14	41	12.7882
.((((...((((......)))))))).	chr2:21228893-21229111(-)$1	1	129	156	13.4558
((.((....(((......)))...)).	chr22:38247317-38247562(+)$1	1	87	114	15.6933
(((((.((.(((......)))))..))	chr14:69256315-69256590(-)$1	1	205	232	14.2713

#PSSM
e : 0.15	[ : 0.09	" : 0.07	g : 0.07	= : 0.07	f : 0.07	c : 0.05	# : 0.05	: : 0.05	a : 0.05	! : 0.05	i : 0.03	d : 0.03	b : 0.01	E : 0.01	h : 0.01	
e : 0.17	c : 0.15	g : 0.11	! : 0.09	= : 0.07	f : 0.07	[ : 0.05	d : 0.05	: : 0.03	# : 0.03	" : 0.03	a : 0.01	i : 0.01	h : 0.01	
e : 0.23	c : 0.19	g : 0.13	d : 0.07	f : 0.07	= : 0.05	! : 0.05	[ : 0.03	: : 0.01	# : 0.01	i : 0.01	" : 0.01	b : 0.01	h : 0.01	
e : 0.21	c : 0.19	g : 0.13	d : 0.11	f : 0.09	= : 0.05	i : 0.05	b : 0.03	[ : 0.01	: : 0.01	# : 0.01	h : 0.01	
e : 0.19	g : 0.13	d : 0.11	c : 0.11	f : 0.09	= : 0.05	[ : 0.05	# : 0.05	i : 0.05	a : 0.03	" : 0.01	h : 0.01	b : 0.01	
# : 0.15	c : 0.13	g : 0.11	e : 0.11	" : 0.07	! : 0.07	= : 0.05	d : 0.05	i : 0.05	f : 0.05	[ : 0.03	a : 0.01	h : 0.01	
# : 0.15	" : 0.13	c : 0.11	! : 0.11	g : 0.09	e : 0.05	= : 0.05	f : 0.05	d : 0.05	i : 0.05	b : 0.03	a : 0.01	h : 0.01	
" : 0.15	# : 0.15	! : 0.11	c : 0.11	g : 0.09	= : 0.05	f : 0.05	e : 0.05	i : 0.05	b : 0.05	d : 0.01	a : 0.01	h : 0.01	
[ : 0.17	d : 0.13	! : 0.11	" : 0.11	# : 0.11	g : 0.05	= : 0.05	e : 0.05	c : 0.03	f : 0.03	i : 0.03	b : 0.01	a : 0.01	
c : 0.47	d : 0.13	[ : 0.05	= : 0.05	" : 0.05	e : 0.05	g : 0.03	i : 0.03	! : 0.03	# : 0.01	f : 0.01	
c : 0.45	b : 0.15	d : 0.11	e : 0.05	= : 0.03	g : 0.03	[ : 0.03	i : 0.03	f : 0.01	" : 0.01	a : 0.01	
c : 0.47	b : 0.15	d : 0.11	a : 0.05	e : 0.05	= : 0.03	i : 0.03	f : 0.01	g : 0.01	o : 0.01	
o : 0.96	c : 0.01	n : 0.01	
o : 0.96	c : 0.01	n : 0.01	
o : 0.96	l : 0.01	n : 0.01	
o : 0.96	l : 0.01	n : 0.01	
o : 0.96	l : 0.01	n : 0.01	
o : 0.94	c : 0.03	a : 0.01	
c : 0.47	b : 0.15	d : 0.11	a : 0.05	e : 0.05	= : 0.03	i : 0.03	f : 0.01	g : 0.01	] : 0.01	
c : 0.49	b : 0.15	d : 0.11	] : 0.05	e : 0.05	= : 0.03	i : 0.03	f : 0.01	g : 0.01	
c : 0.45	d : 0.13	] : 0.05	= : 0.05	3 : 0.05	e : 0.05	g : 0.03	f : 0.03	i : 0.03	2 : 0.03	4 : 0.01	
2 : 0.19	d : 0.17	] : 0.11	c : 0.07	3 : 0.07	e : 0.07	= : 0.05	f : 0.05	g : 0.03	i : 0.03	4 : 0.01	7 : 0.01	a : 0.01	b : 0.01	
2 : 0.17	3 : 0.13	c : 0.09	e : 0.07	f : 0.07	d : 0.07	= : 0.05	g : 0.05	b : 0.05	4 : 0.03	] : 0.03	i : 0.03	a : 0.01	7 : 0.01	h : 0.01	
c : 0.17	e : 0.11	g : 0.09	3 : 0.09	f : 0.09	d : 0.07	= : 0.05	i : 0.05	4 : 0.03	b : 0.03	] : 0.03	2 : 0.03	a : 0.01	7 : 0.01	h : 0.01	
e : 0.15	c : 0.15	3 : 0.11	g : 0.09	f : 0.07	= : 0.05	2 : 0.05	4 : 0.05	d : 0.05	i : 0.05	] : 0.03	7 : 0.01	h : 0.01	b : 0.01	
e : 0.17	c : 0.15	g : 0.09	2 : 0.07	f : 0.07	3 : 0.05	= : 0.05	4 : 0.05	i : 0.05	d : 0.03	] : 0.03	b : 0.03	a : 0.01	7 : 0.01	h : 0.01	
e : 0.15	g : 0.13	c : 0.11	i : 0.07	f : 0.07	] : 0.05	3 : 0.05	= : 0.05	2 : 0.05	d : 0.03	4 : 0.03	5 : 0.01	: : 0.01	a : 0.01	b : 0.01	7 : 0.01	h : 0.01	

#score	720.5223891264299
#seq	51
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF803GSP_RPS11_CDS_m1_run2.txt

#BEAR
ggggggccc[ccc[cccccclllccc22ccc]cccccc]g	chr2:54197781-54198048(-)$1	267	158	198	25.5938
e[ggggggg[ccc!!a!!ammmma22a22cccggggggg2	chr6:27778060-27778301(+)$1	241	4	44	24.9940
[hhhhhhhh[ccc[bb[ccclllccc]bbccc]hhhhhhh	chr1:22263547-22263814(-)$1	267	192	232	26.3879

#otherMatches

#Seq PSSM
Agcccccggagccgggcgggcgucccgagccgggcccgcg	chr2:54197781-54198048(-)$1	267	158	198	25.5938
GUGCGUGAGAUCGCGCAGGACUUCAAGACCGACUUGCGCU	chr6:27778060-27778301(+)$1	241	4	44	24.9940
ggggcgggggcggaggggCUAGGGGCGCCCCGGUCCCGCU	chr1:22263547-22263814(-)$1	267	192	232	26.3879

#DB
(((((((((.(((.((((((...)))..))).)))))).)	chr2:54197781-54198048(-)$1	1	158	198	25.5938
(.(((((((.(((..(..(....)..)..)))))))))).	chr6:27778060-27778301(+)$1	1	4	44	24.9940
.((((((((.(((.((.(((...))).))))).)))))))	chr1:22263547-22263814(-)$1	1	192	232	26.3879

#PSSM
g : 0.33	e : 0.33	[ : 0.33	
g : 0.33	[ : 0.33	h : 0.33	
g : 0.66	h : 0.33	
g : 0.66	h : 0.33	
g : 0.66	h : 0.33	
g : 0.66	h : 0.33	
c : 0.33	g : 0.33	h : 0.33	
c : 0.33	g : 0.33	h : 0.33	
c : 0.33	g : 0.33	h : 0.33	
[ : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
[ : 0.66	! : 0.33	
c : 0.33	! : 0.33	b : 0.33	
c : 0.33	a : 0.33	b : 0.33	
c : 0.33	! : 0.33	[ : 0.33	
c : 0.66	! : 0.33	
c : 0.66	a : 0.33	
c : 0.66	m : 0.33	
l : 0.66	m : 0.33	
l : 0.66	m : 0.33	
l : 0.66	m : 0.33	
c : 0.66	a : 0.33	
c : 0.66	2 : 0.33	
c : 0.66	2 : 0.33	
2 : 0.33	a : 0.33	] : 0.33	
2 : 0.66	b : 0.33	
c : 0.33	2 : 0.33	b : 0.33	
c : 1.00	
c : 1.00	
c : 0.66	] : 0.33	
c : 0.33	g : 0.33	] : 0.33	
c : 0.33	g : 0.33	h : 0.33	
c : 0.33	g : 0.33	h : 0.33	
c : 0.33	g : 0.33	h : 0.33	
c : 0.33	g : 0.33	h : 0.33	
c : 0.33	g : 0.33	h : 0.33	
] : 0.33	g : 0.33	h : 0.33	
g : 0.33	2 : 0.33	h : 0.33	

#score	76.97584840136668
#seq	3
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_transcript_m2_run1.txt

#BEAR
gggggggeeeeemmmmeeeee22ggg	chr20:26189854-26190127(-)$1	273	235	261	8.6379
ggggggg"""ccclllccc]gggggg	chr1:150192890-150193164(-)$1	274	83	109	12.8150
ggggggg!!cccmmmmccc4444ggg	chr10:70101465-70101709(+)$1	244	181	207	13.3864
[ggggggg[cccmmmmcccggggggg	chr11:62297232-62297514(-)$1	282	237	263	12.7759
ffff[bb"""ccclllccc]bb]fff	chr9:136216196-136216408(+)$1	212	165	191	10.8545
gggggg[bb[bbmmmmbb]bb22ggg	chr11:93454731-93455003(+)$1	272	5	31	8.2668
bb[eeeee[cccmmmmccc]eeeee]	chr11:93454857-93455084(+)$1	227	168	194	11.4643
ggggggbb[cccmmmmccc]bb]ggg	chr11:17097270-17097510(-)$1	240	98	124	12.2324
ddd[dddd!!ccclllccc22dddd]	chr11:122929515-122929719(-)$1	204	120	146	10.5957
ggggggbb[cccmmmmccc]bb]ggg	chr11:17097232-17097454(-)$1	222	42	68	12.2324
hhhhhhhh[cccmmmmccc]hhhhhh	chr20:26190112-26190353(-)$1	241	176	202	10.4704
ee"""bb"""ccclllccc333bb33	chr9:134083156-134083434(+)$1	278	214	240	11.7922
ggggggg[cccnnnnnccc22ggggg	chrX:135961261-135961470(-)$1	209	21	47	10.4616
ffff[bb"""ccclllccc]bb]fff	chr9:136216210-136216427(+)$1	217	151	177	10.8545
ggggggg!!ccc[===========[a	chr20:26190355-26190580(-)$1	225	143	169	9.4255
"""bb[ggggggglllgggggggbb3	chr11:62283507-62283768(-)$1	261	221	247	8.3826
bb"""gggggggmmmmggggggg444	chr11:62284203-62284436(-)$1	233	42	68	9.4872
FFccc"""acccmmmmccc]a333cc	chr14:23528279-23528616(-)$1	337	297	323	11.7131
###a[bb!!cccmmmmccc22bba22	chr8:142139017-142139244(+)$1	227	135	161	11.9445
gg[eeeee!!ccclllccc22eeeee	chr16:2820156-2820430(+)$1	274	15	41	11.3727
ddd[dddd!!ccclllccc22dddd]	chr11:122929519-122929730(-)$1	211	131	157	10.5957
hhhhhhhh[cccmmmmccc]hhhhhh	chr20:26190063-26190311(-)$1	248	134	160	10.4704
[dddd####cccmmmmccc333dddd	chr11:62284904-62285131(-)$1	227	97	123	12.1841
b[iiiiiiiiiooooooiiiiiiiii	chr11:82869286-82869527(+)$1	241	48	74	9.4265
cc[eeeee!!ccclllccc22eeeee	chr6:43745813-43746070(+)$1	257	48	74	11.1657
!!eeeee!!cccmmmmccc]eeeeed	chr16:2015157-2015412(+)$1	255	155	181	11.9887
ff!!bb"""cccmmmmccc333bb22	chr19:49611445-49611716(+)$1	271	117	143	12.4472
ffffff"""cccmmmmcccffffff:	chr11:62286001-62286236(-)$1	235	126	152	10.1189
##==========mmmm==========	chr6:31698294-31698539(-)$1	245	26	52	11.6195
ffiiiiiiiiiooooooiiiiiiiii	chr9:100777545-100777750(+)$1	205	22	48	9.4103
ddd[ccc!!cccmmmmccc333ccc]	chrX:152956626-152956833(+)$1	207	50	76	13.1365
##==========mmmm==========	chr7:150067360-150067652(+)$1	292	158	184	11.6195
fffff[a[ddddmmmmdddd]a]fff	chr19:2270112-2270385(+)$1	273	200	226	8.7128
!!a[ccc[ddddmmmmdddd]ccc]a	chr17:34171748-34172015(+)$1	267	169	195	9.3512
gggg$$$$$ddddllldddd333ggg	chr19:10406575-10406898(+)$1	323	7	33	9.0616
[ccc!!a!!ccclllccc22a22ccc	chr19:3053628-3053889(-)$1	261	148	174	11.1528
:ffffff!!cccmmmmccc22fffff	chr19:3982404-3982652(-)$1	248	137	163	10.9425
eee!!ccc[ccclllccc333ccc22	chr5:40832665-40832902(-)$1	237	146	172	10.9755
#bb!!gggggggooooooggggggg2	chr9:100777550-100777862(+)$1	312	73	99	8.4989
hhhhhh"""cccmmmmccc]hhhhhh	chr6:34664399-34664668(-)$1	269	182	208	11.3753
========[cccmmmmccc=======	chr11:17096143-17096383(-)$1	240	200	226	13.2494
dd!!dddd[cccmmmmccc333dddd	chr11:62300880-62301181(-)$1	301	148	174	11.6560
bb[eeeee[cccmmmmccc]eeeee]	chr11:93454813-93455057(+)$1	244	212	238	11.4643
:ggggggg[cccmmmmccc22ggggg	chr2:101889380-101889595(-)$1	215	110	136	12.4059
!!ccc[a!!bbnnnnnbb22a]ccc2	chr14:39649800-39650031(+)$1	231	3	29	8.1287
ddd[dddd!!ccclllccc22dddd]	chr11:122929530-122929788(-)$1	258	189	215	10.5957
[eeeee####ccclllccceeeee]c	chr11:62298387-62298640(-)$1	253	218	244	10.6947
II==========mmmm==========	chrX:20154130-20154410(-)$1	280	44	70	9.2665
eeeee####cccmmmmccc]eeeee4	chr11:62290434-62290675(-)$1	241	66	92	11.9139

#otherMatches

#Seq PSSM
CGGGCCCUGUGAGCGAUCGCGGUGGG	chr20:26189854-26190127(-)$1	273	235	261	8.6379
UUCUUUCCACUCUUUAAGAAGAAGGA	chr1:150192890-150193164(-)$1	274	83	109	12.8150
GUAGUGCAAACUUUAAAGUGCAGGUA	chr10:70101465-70101709(+)$1	244	181	207	13.3864
GACCUUGGUGUUUCAGGACCCAAGGU	chr11:62297232-62297514(-)$1	282	237	263	12.7759
ACAUGGAAUUUGAGCCUCACUCGGUG	chr9:136216196-136216408(+)$1	212	165	191	10.8545
CAUCAGAAGUCUUUCCAGUCUACCUG	chr11:93454731-93455003(+)$1	272	5	31	8.2668
GAGCUCAGAAGUGACAACUGCUGGGG	chr11:93454857-93455084(+)$1	227	168	194	11.4643
cugugaugaugguuuuccaacauucg	chr11:17097270-17097510(-)$1	240	98	124	12.2324
GACCCUAGCACUGUCACAGACCUGGA	chr11:122929515-122929719(-)$1	204	120	146	10.5957
cugugaugaugguuuuccaacauucg	chr11:17097232-17097454(-)$1	222	42	68	12.2324
GGGGAGUUUGCGCGAGCGUUGGCUCC	chr20:26190112-26190353(-)$1	241	176	202	10.4704
augagggaaaugaaaaucaaaaccac	chr9:134083156-134083434(+)$1	278	214	240	11.7922
UAUUAUAAUUAAAAUAUAAGCUAUGA	chrX:135961261-135961470(-)$1	209	21	47	10.4616
ACAUGGAAUUUGAGCCUCACUCGGUG	chr9:136216210-136216427(+)$1	217	151	177	10.8545
ccuucuucucgucccgcccgcggggg	chr20:26190355-26190580(-)$1	225	143	169	9.4255
UUUUGUAAGGGAACUGUUUCCUUCAU	chr11:62283507-62283768(-)$1	261	221	247	8.3826
GCAAAGGUCAUUAUGAGGUGACUGGG	chr11:62284203-62284436(-)$1	233	42	68	9.4872
GCCCCAGGGGGUUAUGGCCACAGAGG	chr14:23528279-23528616(-)$1	337	297	323	11.7131
UGAGACAUGUCUUUUGAGAGCUGCGA	chr8:142139017-142139244(+)$1	227	135	161	11.9445
gcccacugggcacucgguggaugGUG	chr16:2820156-2820430(+)$1	274	15	41	11.3727
GACCCUAGCACUGUCACAGACCUGGA	chr11:122929519-122929730(-)$1	211	131	157	10.5957
GGGGAGUUUGCGCGAGCGUUGGCUCC	chr20:26190063-26190311(-)$1	248	134	160	10.4704
UUCUCAGGACCAAAGGUGGAAGGAGG	chr11:62284904-62285131(-)$1	227	97	123	12.1841
UAAUUUGUCCCAAAAUAGGGGCAAGU	chr11:82869286-82869527(+)$1	241	48	74	9.4265
CUACUAGGAGUCAGGGUGAAGCCUAG	chr6:43745813-43746070(+)$1	257	48	74	11.1657
CUGCCGCCUCCCCCCCGGGUGCGGUC	chr16:2015157-2015412(+)$1	255	155	181	11.9887
cgaggugggggcgguggccaggacAA	chr19:49611445-49611716(+)$1	271	117	143	12.4472
CCUCUCUUGAAGGAGACUUGAGAGGA	chr11:62286001-62286236(-)$1	235	126	152	10.1189
GAAUCCUGGAGCACUUGUUCCGGGAU	chr6:31698294-31698539(-)$1	245	26	52	11.6195
UUGUUGUUGCCUCCAUUGGCAAUAAU	chr9:100777545-100777750(+)$1	205	22	48	9.4103
CCAGCCUGGGUGGGGACAUAAAGGGG	chrX:152956626-152956833(+)$1	207	50	76	13.1365
GGCGGUGGUCUGGCGUUAGACUGCCG	chr7:150067360-150067652(+)$1	292	158	184	11.6195
AGCGUGCGCUGCGGGAGCGGGGAGCG	chr19:2270112-2270385(+)$1	273	200	226	8.7128
AGUGGCUACGGUGGAGACCGAAGUGG	chr17:34171748-34172015(+)$1	267	169	195	9.3512
AAUUCACAAUCCACUGUGGGGAAGAU	chr19:10406575-10406898(+)$1	323	7	33	9.0616
ACAAGACACAGCGGAGCUCGGGAUUG	chr19:3053628-3053889(-)$1	261	148	174	11.1528
UGCGUCUGAGGCCCAUGCCCAAGGCG	chr19:3982404-3982652(-)$1	248	137	163	10.9425
AUUGAAAUCUGUUUAACAAAAAUUAA	chr5:40832665-40832902(-)$1	237	146	172	10.9755
GUCAAUUUUUGUUACUGUACagagga	chr9:100777550-100777862(+)$1	312	73	99	8.4989
GGUCGCGAAGCUAGCUAGCAGCGGCC	chr6:34664399-34664668(-)$1	269	182	208	11.3753
GCUUGAACACAAUGAGUUGGUUCAGG	chr11:17096143-17096383(-)$1	240	200	226	13.2494
GGUAGGGCAGUAGAGGUACAGGGCCC	chr11:62300880-62301181(-)$1	301	148	174	11.6560
GAGCUCAGAAGUGACAACUGCUGGGG	chr11:93454813-93455057(+)$1	244	212	238	11.4643
CGAAUUGCAGUGUCUCCAUCAGCAGU	chr2:101889380-101889595(-)$1	215	110	136	12.4059
GGUGCGUAAUGAAGAACAGAAGGCGG	chr14:39649800-39650031(+)$1	231	3	29	8.1287
GACCCUAGCACUGUCACAGACCUGGA	chr11:122929530-122929788(-)$1	258	189	215	10.5957
UUGUCUCAGGACCCAAGGUGGACAUC	chr11:62298387-62298640(-)$1	253	218	244	10.6947
GGGUGUGUGUGUGUGUGCACGCACAC	chrX:20154130-20154410(-)$1	280	44	70	9.2665
GGGCGAUGUGGAUGUUUCUCUGCCCA	chr11:62290434-62290675(-)$1	241	66	92	11.9139

#DB
((((((((((((....)))))..)))	chr20:26189854-26190127(-)$1	1	235	261	8.6379
(((((((...(((...))).))))))	chr1:150192890-150193164(-)$1	1	83	109	12.8150
(((((((..(((....)))....)))	chr10:70101465-70101709(+)$1	1	181	207	13.3864
.(((((((.(((....))))))))))	chr11:62297232-62297514(-)$1	1	237	263	12.7759
((((.((...(((...))).)).)))	chr9:136216196-136216408(+)$1	1	165	191	10.8545
((((((.((.((....)).))..)))	chr11:93454731-93455003(+)$1	1	5	31	8.2668
((.(((((.(((....))).))))).	chr11:93454857-93455084(+)$1	1	168	194	11.4643
((((((((.(((....))).)).)))	chr11:17097270-17097510(-)$1	1	98	124	12.2324
(((.((((..(((...)))..)))).	chr11:122929515-122929719(-)$1	1	120	146	10.5957
((((((((.(((....))).)).)))	chr11:17097232-17097454(-)$1	1	42	68	12.2324
((((((((.(((....))).))))))	chr20:26190112-26190353(-)$1	1	176	202	10.4704
((...((...(((...)))...))..	chr9:134083156-134083434(+)$1	1	214	240	11.7922
(((((((.(((.....)))..)))))	chrX:135961261-135961470(-)$1	1	21	47	10.4616
((((.((...(((...))).)).)))	chr9:136216210-136216427(+)$1	1	151	177	10.8545
(((((((..(((.(((((((((((.(	chr20:26190355-26190580(-)$1	1	143	169	9.4255
...((.(((((((...))))))))).	chr11:62283507-62283768(-)$1	1	221	247	8.3826
((...(((((((....)))))))...	chr11:62284203-62284436(-)$1	1	42	68	9.4872
))(((...((((....))).)...))	chr14:23528279-23528616(-)$1	1	297	323	11.7131
...(.((..(((....)))..)))..	chr8:142139017-142139244(+)$1	1	135	161	11.9445
((.(((((..(((...)))..)))))	chr16:2820156-2820430(+)$1	1	15	41	11.3727
(((.((((..(((...)))..)))).	chr11:122929519-122929730(-)$1	1	131	157	10.5957
((((((((.(((....))).))))))	chr20:26190063-26190311(-)$1	1	134	160	10.4704
.((((....(((....)))...))))	chr11:62284904-62285131(-)$1	1	97	123	12.1841
(.(((((((((......)))))))))	chr11:82869286-82869527(+)$1	1	48	74	9.4265
((.(((((..(((...)))..)))))	chr6:43745813-43746070(+)$1	1	48	74	11.1657
..(((((..(((....))).))))))	chr16:2015157-2015412(+)$1	1	155	181	11.9887
((..((...(((....)))...))..	chr19:49611445-49611716(+)$1	1	117	143	12.4472
((((((...(((....))))))))).	chr11:62286001-62286236(-)$1	1	126	152	10.1189
..((((((((((....))))))))))	chr6:31698294-31698539(-)$1	1	26	52	11.6195
(((((((((((......)))))))))	chr9:100777545-100777750(+)$1	1	22	48	9.4103
(((.(((..(((....)))...))).	chrX:152956626-152956833(+)$1	1	50	76	13.1365
..((((((((((....))))))))))	chr7:150067360-150067652(+)$1	1	158	184	11.6195
(((((.(.((((....)))).).)))	chr19:2270112-2270385(+)$1	1	200	226	8.7128
..(.(((.((((....)))).))).)	chr17:34171748-34172015(+)$1	1	169	195	9.3512
((((.....((((...))))...)))	chr19:10406575-10406898(+)$1	1	7	33	9.0616
.(((..(..(((...)))..)..)))	chr19:3053628-3053889(-)$1	1	148	174	11.1528
.((((((..(((....)))..)))))	chr19:3982404-3982652(-)$1	1	137	163	10.9425
(((..(((.(((...)))...)))..	chr5:40832665-40832902(-)$1	1	146	172	10.9755
.((..(((((((......))))))).	chr9:100777550-100777862(+)$1	1	73	99	8.4989
((((((...(((....))).))))))	chr6:34664399-34664668(-)$1	1	182	208	11.3753
((((((((.(((....))))))))))	chr11:17096143-17096383(-)$1	1	200	226	13.2494
((..((((.(((....)))...))))	chr11:62300880-62301181(-)$1	1	148	174	11.6560
((.(((((.(((....))).))))).	chr11:93454813-93455057(+)$1	1	212	238	11.4643
.(((((((.(((....)))..)))))	chr2:101889380-101889595(-)$1	1	110	136	12.4059
..(((.(..((.....))..).))).	chr14:39649800-39650031(+)$1	1	3	29	8.1287
(((.((((..(((...)))..)))).	chr11:122929530-122929788(-)$1	1	189	215	10.5957
.(((((....(((...)))))))).)	chr11:62298387-62298640(-)$1	1	218	244	10.6947
((((((((((((....))))))))))	chrX:20154130-20154410(-)$1	1	44	70	9.2665
(((((....(((....))).))))).	chr11:62290434-62290675(-)$1	1	66	92	11.9139

#PSSM
g : 0.20	f : 0.12	d : 0.10	[ : 0.08	b : 0.08	# : 0.08	h : 0.06	e : 0.06	! : 0.06	: : 0.04	" : 0.02	F : 0.02	c : 0.02	= : 0.02	I : 0.02	
g : 0.24	f : 0.14	d : 0.12	b : 0.08	e : 0.08	h : 0.06	# : 0.06	! : 0.06	c : 0.04	" : 0.02	F : 0.02	[ : 0.02	= : 0.02	I : 0.02	
g : 0.22	f : 0.10	d : 0.10	[ : 0.08	e : 0.08	= : 0.08	h : 0.06	" : 0.06	c : 0.06	i : 0.04	! : 0.04	# : 0.02	a : 0.02	b : 0.02	
g : 0.22	e : 0.14	f : 0.10	[ : 0.10	! : 0.08	= : 0.08	h : 0.06	c : 0.06	" : 0.04	i : 0.04	b : 0.02	a : 0.02	d : 0.02	
g : 0.20	e : 0.14	d : 0.10	c : 0.08	= : 0.08	[ : 0.06	h : 0.06	f : 0.06	! : 0.06	" : 0.04	b : 0.04	i : 0.04	$ : 0.02	
g : 0.24	e : 0.12	b : 0.10	d : 0.08	= : 0.08	h : 0.06	[ : 0.06	c : 0.06	# : 0.04	i : 0.04	f : 0.04	" : 0.02	$ : 0.02	! : 0.02	
g : 0.20	b : 0.12	e : 0.10	d : 0.08	" : 0.08	= : 0.08	# : 0.06	c : 0.06	a : 0.06	h : 0.04	i : 0.04	[ : 0.02	$ : 0.02	f : 0.02	
" : 0.16	! : 0.16	e : 0.10	g : 0.10	d : 0.08	= : 0.08	b : 0.06	[ : 0.06	# : 0.06	h : 0.04	i : 0.04	$ : 0.02	c : 0.02	
! : 0.26	[ : 0.22	" : 0.14	g : 0.06	# : 0.06	= : 0.06	i : 0.04	d : 0.04	e : 0.02	b : 0.02	c : 0.02	a : 0.02	$ : 0.02	
c : 0.51	! : 0.10	" : 0.08	g : 0.06	= : 0.06	d : 0.06	i : 0.04	e : 0.02	[ : 0.02	b : 0.02	# : 0.02	
c : 0.71	g : 0.06	= : 0.06	d : 0.06	b : 0.04	i : 0.04	e : 0.02	
c : 0.69	g : 0.06	= : 0.06	d : 0.06	n : 0.04	o : 0.04	e : 0.02	b : 0.02	
m : 0.59	c : 0.20	o : 0.06	n : 0.04	l : 0.04	[ : 0.02	g : 0.02	d : 0.02	
m : 0.59	l : 0.28	o : 0.06	n : 0.04	= : 0.02	
m : 0.59	l : 0.28	o : 0.06	n : 0.04	= : 0.02	
m : 0.59	l : 0.24	o : 0.06	n : 0.04	c : 0.04	= : 0.02	
c : 0.69	= : 0.08	o : 0.06	d : 0.06	b : 0.04	g : 0.04	e : 0.02	
c : 0.69	= : 0.08	d : 0.06	b : 0.04	g : 0.04	i : 0.04	e : 0.02	o : 0.02	
c : 0.65	= : 0.08	g : 0.06	d : 0.06	i : 0.04	2 : 0.04	e : 0.02	] : 0.02	3 : 0.02	
] : 0.26	2 : 0.22	3 : 0.12	= : 0.10	g : 0.08	d : 0.06	e : 0.04	i : 0.04	4 : 0.02	b : 0.02	f : 0.02	
2 : 0.18	3 : 0.14	e : 0.12	g : 0.10	b : 0.10	= : 0.10	h : 0.06	a : 0.06	i : 0.04	] : 0.04	4 : 0.02	f : 0.02	
g : 0.14	e : 0.14	3 : 0.14	b : 0.10	= : 0.10	2 : 0.06	d : 0.06	h : 0.06	i : 0.04	f : 0.04	c : 0.04	4 : 0.02	a : 0.02	] : 0.02	
g : 0.14	e : 0.14	] : 0.10	d : 0.10	= : 0.10	c : 0.08	2 : 0.06	h : 0.06	b : 0.06	3 : 0.04	i : 0.04	f : 0.04	4 : 0.02	
g : 0.22	e : 0.14	f : 0.10	d : 0.10	= : 0.10	c : 0.10	h : 0.06	b : 0.06	i : 0.04	4 : 0.02	3 : 0.02	a : 0.02	
g : 0.22	e : 0.12	f : 0.10	d : 0.10	c : 0.08	= : 0.08	h : 0.06	2 : 0.06	i : 0.04	] : 0.04	3 : 0.02	[ : 0.02	b : 0.02	4 : 0.02	
g : 0.20	] : 0.12	2 : 0.10	f : 0.08	= : 0.08	h : 0.06	c : 0.06	d : 0.06	3 : 0.04	a : 0.04	4 : 0.04	e : 0.04	i : 0.04	: : 0.02	

#score	532.7968758135022
#seq	49
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_CDS_m1_run2.txt

#BEAR
!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10783-10991(+)$1	208	71	108	49.5909
!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10792-11004(+)$1	212	62	99	49.5909
eeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:9779-9999(+)$1	220	57	94	46.7953
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:8594-8842(+)$1	248	210	247	49.8524
ccc[dddd^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chrM:7804-8041(+)$1	237	124	161	43.6329
eeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chrM:9720-9938(+)$1	218	116	153	46.7953
ccc[dddd^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chrM:7793-8004(+)$1	211	135	172	43.6329
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc44	chrM:10148-10372(+)$1	224	113	150	49.1131
ddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chrM:13177-13404(+)$1	227	48	85	48.9045
ccc[dddd^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chrM:7783-7993(+)$1	210	145	182	43.6329
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:9029-9279(+)$1	250	59	96	49.8524
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrM:5311-5535(+)$1	224	55	92	49.7451
!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10804-11048(+)$1	244	50	87	49.5909
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]dd	chrM:7742-7977(+)$1	235	73	110	48.4425
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddddD	chrM:9834-10051(+)$1	217	2	39	46.8584
!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrM:10710-10947(+)$1	237	144	181	49.5909
:::dddd^^^^^^^^^^^^^^^^^^^^^^^^^dddd:	chrM:15566-15817(+)$1	251	52	89	41.5705

#otherMatches

#Seq PSSM
UAAUUAUUAGCAUCAUCCCCCUACUAUUUUUUAACCA	chrM:10783-10991(+)$1	208	71	108	49.5909
UAAUUAUUAGCAUCAUCCCCCUACUAUUUUUUAACCA	chrM:10792-11004(+)$1	212	62	99	49.5909
UGGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCCAA	chrM:9779-9999(+)$1	220	57	94	46.7953
CACCAACCACCCAACUAUCUAUAAACCUAGCCAUGGC	chrM:8594-8842(+)$1	248	210	247	49.8524
GGACUAAUCUUCAACUCCUACAUACUUCCCCCAUUAU	chrM:7804-8041(+)$1	237	124	161	43.6329
UGGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCCAA	chrM:9720-9938(+)$1	218	116	153	46.7953
GGACUAAUCUUCAACUCCUACAUACUUCCCCCAUUAU	chrM:7793-8004(+)$1	211	135	172	43.6329
AAAUUGCCCUCCUUUUACCCCUACCAUGAGCCCUACA	chrM:10148-10372(+)$1	224	113	150	49.1131
GACAUCAAAAAAAUCGUAGCCUUCUCCACUUCAAGUC	chrM:13177-13404(+)$1	227	48	85	48.9045
GGACUAAUCUUCAACUCCUACAUACUUCCCCCAUUAU	chrM:7783-7993(+)$1	210	145	182	43.6329
UCUACACUUAUCAUCUUCACAAUUCUAAUUCUACUGA	chrM:9029-9279(+)$1	250	59	96	49.8524
CACCUCAAUCACACUACUCCCCAUAUCUAACAACGUA	chrM:5311-5535(+)$1	224	55	92	49.7451
UAAUUAUUAGCAUCAUCCCCCUACUAUUUUUUAACCA	chrM:10804-11048(+)$1	244	50	87	49.5909
CCCUCCCAUCCCUACGCAUCCUUUACAUAACAGACGA	chrM:7742-7977(+)$1	235	73	110	48.4425
UGGCUCAACUUUCCUCACUAUCUGCUUCAUCCGCCAA	chrM:9834-10051(+)$1	217	2	39	46.8584
UAAUUAUUAGCAUCAUCCCCCUACUAUUUUUUAACCA	chrM:10710-10947(+)$1	237	144	181	49.5909
UCCUUGCCCUAUUACUAUCCAUCCUCAUCCUAGCAAU	chrM:15566-15817(+)$1	251	52	89	41.5705

#DB
.(((.................................	chrM:10783-10991(+)$1	1	71	108	49.5909
.(((.................................	chrM:10792-11004(+)$1	1	62	99	49.5909
((((............................)))))	chrM:9779-9999(+)$1	1	57	94	46.7953
..................................)))	chrM:8594-8842(+)$1	1	210	247	49.8524
(((.((((........................)))).	chrM:7804-8041(+)$1	1	124	161	43.6329
((((............................)))))	chrM:9720-9938(+)$1	1	116	153	46.7953
(((.((((........................)))).	chrM:7793-8004(+)$1	1	135	172	43.6329
................................)))..	chrM:10148-10372(+)$1	1	113	150	49.1131
(((...............................)))	chrM:13177-13404(+)$1	1	48	85	48.9045
(((.((((........................)))).	chrM:7783-7993(+)$1	1	145	182	43.6329
..................................)))	chrM:9029-9279(+)$1	1	59	96	49.8524
.................................))))	chrM:5311-5535(+)$1	1	55	92	49.7451
.(((.................................	chrM:10804-11048(+)$1	1	50	87	49.5909
................................)).))	chrM:7742-7977(+)$1	1	73	110	48.4425
((((............................))))(	chrM:9834-10051(+)$1	1	2	39	46.8584
.(((.................................	chrM:10710-10947(+)$1	1	144	181	49.5909
...((((.........................)))).	chrM:15566-15817(+)$1	1	52	89	41.5705

#PSSM
^ : 0.29	! : 0.23	c : 0.17	e : 0.11	d : 0.11	: : 0.05	
c : 0.41	^ : 0.29	e : 0.11	d : 0.11	: : 0.05	
c : 0.41	^ : 0.29	e : 0.11	d : 0.11	: : 0.05	
^ : 0.35	c : 0.23	[ : 0.17	e : 0.11	d : 0.11	
^ : 0.76	d : 0.23	
^ : 0.76	d : 0.23	
^ : 0.76	d : 0.23	
^ : 0.82	d : 0.17	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.47	d : 0.29	e : 0.11	c : 0.05	b : 0.05	
^ : 0.41	d : 0.35	e : 0.11	c : 0.05	b : 0.05	
d : 0.41	^ : 0.23	c : 0.17	e : 0.11	] : 0.05	
d : 0.47	^ : 0.23	e : 0.11	c : 0.11	4 : 0.05	
^ : 0.23	] : 0.17	d : 0.17	e : 0.11	c : 0.11	4 : 0.05	D : 0.05	: : 0.05	

#score	807.1924237649118
#seq	17
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_CDS_m1_run1.txt

#BEAR
deeeeettttttttttteeeee	chr1:46782123-46782339(+)$1	216	175	197	22.5830
fff[bbyyyyyyyyyyyyyyyy	chr17:39679986-39680298(-)$1	312	170	192	19.6737
gggggguuuuuuuuuuuugggg	chr1:20978772-20979059(-)$1	287	252	274	22.5785
e[awwwwwwwwwwwwwwa]eee	chr11:57509570-57509817(+)$1	247	88	110	19.8117
"eeeeettttttttttteeeee	chr5:150404927-150405151(+)$1	224	71	93	22.8937
fffffftttttttttttfffff	chr15:44085076-44085311(+)$1	235	148	170	21.9963
ccddddtttttttttttdddd]	chr2:88423985-88424205(-)$1	220	137	159	22.5971
ggggggtttttttttttggggg	chr3:49158580-49158829(-)$1	249	141	163	22.5189
ggggggtttttttttttggggg	chr8:126033914-126034278(+)$1	364	25	47	22.5189
[a!!bbuuuuuuuuuuuubb33	chr12:56510458-56510684(+)$1	226	165	187	21.9033
eeeeevvvvvvvvvvvvveeee	chr7:99751393-99751730(+)$1	337	86	108	22.1374
##ddddtttttttttttdddd3	chr19:5691250-5691521(+)$1	271	19	41	22.7445
eee[bbuuuuuuuuuuuubbee	chr17:6917537-6917907(+)$1	370	188	210	21.9457
[dddduuuuuuuuuuuudddd]	chr17:34171744-34172137(+)$1	393	300	322	22.3776
======uuuuuuuuuuuu====	chr6:33384349-33384597(-)$1	248	38	60	22.6770
ffffffuuuuuuuuuuuuffff	chr15:44084427-44084683(+)$1	256	91	113	22.0586
ccddddtttttttttttdddd]	chr2:88423954-88424181(-)$1	227	113	135	22.5971
::ddddtttttttttttdddd:	chr17:73132169-73132442(-)$1	273	197	219	19.7981
gg[bbuuuuuuuuuuuubbggg	chr19:18652452-18652745(-)$1	293	129	151	21.6160
f[ddddyyyyyyyyyyyyyyyy	chr2:98264365-98264664(+)$1	299	201	223	20.0197
"ddddvvvvvvvvvvvvvdddd	chr4:74286727-74286932(+)$1	205	110	132	21.8400
!!cccwwwwwwwwwwwwwwccc	chr6:33257491-33257759(+)$1	268	153	175	21.0154
ffffffuuuuuuuuuuuuffff	chr2:219679548-219679857(+)$1	309	33	55	22.0586
ccccccuuuuuuuuuuuuccce	chr6:41755379-41755669(+)$1	290	226	248	22.5921
ggg[bbtttttttttttbb]gg	chr16:31202286-31202531(+)$1	245	187	209	22.0422
ee!!auuuuuuuuuuuua22ee	chr1:161192162-161192380(-)$1	218	96	118	22.0426
fffffyyyyyyyyyyyyyyyyf	chr2:98263750-98264006(+)$1	256	32	54	20.6656
fffffyyyyyyyyyyyyyyyyf	chr6:33385157-33385422(-)$1	265	237	259	20.6656
hhhhhhuuuuuuuuuuuuhhhh	chr3:129274196-129274474(-)$1	278	80	102	20.3316
::cccuuuuuuuuuuuucccff	chr6:41705367-41705604(-)$1	237	78	100	20.4778
""cccwwwwwwwwwwwwwwccc	chr16:88712422-88712637(-)$1	215	140	162	20.8885
"bbyyyyyyyyyyyyyyyybb3	chr18:43664368-43664664(-)$1	296	90	112	19.8238
cc!!bbtttttttttttbb]cc	chr20:34214094-34214340(-)$1	246	11	33	21.8044
eeeeeuuuuuuuuuuuueeeee	chr9:139735160-139735511(+)$1	351	197	219	22.4295
eeeeeuuuuuuuuuuuueeeee	chr1:161193053-161193263(-)$1	210	187	209	22.4295
ceeeeeuuuuuuuuuuuueeee	chr5:176730755-176731124(+)$1	369	304	326	22.6812
gggggvvvvvvvvvvvvvgggg	chr9:90345917-90346231(+)$1	314	271	293	22.1481
fffffattttttttttta]fff	chr1:46775856-46776089(+)$1	233	61	83	22.7187
e[ddddtttttttttttdddd]	chr2:217069814-217070095(+)$1	281	74	96	22.6596
======ttttttttttt=====	chr12:56119247-56119501(-)$1	254	185	207	22.6700
:ddddvvvvvvvvvvvvvdddd	chr19:45452363-45452636(+)$1	273	206	228	20.8289
((cccuuuuuuuuuuuucccdd	chr14:102515947-102516235(+)$1	288	207	229	21.1273
ffffffuuuuuuuuuuuuffff	chr6:33258012-33258295(+)$1	283	38	60	22.0586
gggggwwwwwwwwwwwwwwggg	chr14:21484904-21485201(-)$1	297	238	260	20.9376
gggggvvvvvvvvvvvvvgggg	chr6:75949915-75950178(-)$1	263	139	161	22.1481
fffffwwwwwwwwwwwwwwfff	chr19:18390720-18390949(-)$1	229	173	195	20.4836
deeeeettttttttttteeeee	chr5:135397121-135397369(+)$1	248	109	131	22.5830
$$ddddtttttttttttdddd5	chr16:30904432-30904706(-)$1	274	235	257	21.5923
!dddduuuuuuuuuuuudddde	chr16:56643068-56643300(+)$1	232	127	149	22.3717
deeeeettttttttttteeeee	chr5:135397088-135397321(+)$1	233	142	164	22.5830
eeddddtttttttttttdddd2	chr16:31202618-31202831(+)$1	213	127	149	22.3703
"eeeeettttttttttteeeee	chr5:150404908-150405127(+)$1	219	90	112	22.8937
""ddddtttttttttttdddd3	chr12:9220308-9220535(-)$1	227	185	207	22.7685
::cccvvvvvvvvvvvvvccc:	chr11:63765093-63765405(+)$1	312	248	270	19.2879
ffffffuuuuuuuuuuuuffff	chr1:24021049-24021265(+)$1	216	160	182	22.0586
%%bb[attttttttttta]bb5	chr10:102744484-102744780(+)$1	296	95	117	20.1172
%eeeeettttttttttteeeee	chr16:29882883-29883134(-)$1	251	64	86	22.3325

#otherMatches

#Seq PSSM
CAGAAUAUUUCCUUAUGGUUUU	chr1:46782123-46782339(+)$1	216	175	197	22.5830
AGCGGCAGAAUCAGGAGUACCA	chr17:39679986-39680298(-)$1	312	170	192	19.6737
GUUUUGUUUUGCUUUGUUUAAA	chr1:20978772-20979059(-)$1	287	252	274	22.5785
GGUGGAAGAGUUGAAGAAGUAC	chr11:57509570-57509817(+)$1	247	88	110	19.8117
AUACGUCCUCUUUGUCAACGUG	chr5:150404927-150405151(+)$1	224	71	93	22.8937
CUCGGUUAAGGGAAAGCGCCGA	chr15:44085076-44085311(+)$1	235	148	170	21.9963
CAACUUUCAAAAACAUCAAGUC	chr2:88423985-88424205(-)$1	220	137	159	22.5971
CAGGUGCAGAUCUACAACACCU	chr3:49158580-49158829(-)$1	249	141	163	22.5189
UUGGAGUAAAUUUUAGUUUCUG	chr8:126033914-126034278(+)$1	364	25	47	22.5189
GCGAGUAGUAGCGAGGAGACGA	chr12:56510458-56510684(+)$1	226	165	187	21.9033
UCUCCUCCAGUGGUCUUUGGAG	chr7:99751393-99751730(+)$1	337	86	108	22.1374
AGCUGCUUAACUAGAAUGCAGG	chr19:5691250-5691521(+)$1	271	19	41	22.7445
AGACUGAAUCCCUUCUCCCAUC	chr17:6917537-6917907(+)$1	370	188	210	21.9457
GAGUAUUAGAAUGUGUUUAUUA	chr17:34171744-34172137(+)$1	393	300	322	22.3776
UUGUAGUUCUGUGCACCCUUAC	chr6:33384349-33384597(-)$1	248	38	60	22.6770
ACGUCCGACAGAACGAGGGGAC	chr15:44084427-44084683(+)$1	256	91	113	22.0586
CAACUUUCAAAAACAUCAAGUC	chr2:88423954-88424181(-)$1	227	113	135	22.5971
AUCCAGAAGAAAUCCCCCUGGC	chr17:73132169-73132442(-)$1	273	197	219	19.7981
GGAGGACAUGGGACAACCCCCG	chr19:18652452-18652745(-)$1	293	129	151	21.6160
ACUGAGCACCUGCACUAAAUUA	chr2:98264365-98264664(+)$1	299	201	223	20.0197
AAGAUCAAAAGCUUAUUCAUCU	chr4:74286727-74286932(+)$1	205	110	132	21.8400
GAUCCAGAAGAAGCUACAGGGA	chr6:33257491-33257759(+)$1	268	153	175	21.0154
GUGGAUGGCAAACACACAAUCC	chr2:219679548-219679857(+)$1	309	33	55	22.0586
UCCGUAUUUCCCCUUUCUUGCG	chr6:41755379-41755669(+)$1	290	226	248	22.5921
GAGGCCAUAGGAUAACAGGGUU	chr16:31202286-31202531(+)$1	245	187	209	22.0422
CUGACACCCCUGAUCAAGAAGG	chr1:161192162-161192380(-)$1	218	96	118	22.0426
uuuuguuuuUUGUUUUUUCUUC	chr2:98263750-98264006(+)$1	256	32	54	20.6656
CUUUCUCCUUUCUCCAGCUCUG	chr6:33385157-33385422(-)$1	265	237	259	20.6656
UUUUAAAGCUUUUAUAUAUUAA	chr3:129274196-129274474(-)$1	278	80	102	20.3316
UGACCUUCAUCAUCAAUGGUGU	chr6:41705367-41705604(-)$1	237	78	100	20.4778
CCGGCCACCCCCAUCCCCAGCC	chr16:88712422-88712637(-)$1	215	140	162	20.8885
AAGGGGAUAUCUUGAUAAACUG	chr18:43664368-43664664(-)$1	296	90	112	19.8238
CACUGACUUUUCCCUUUUCUUG	chr20:34214094-34214340(-)$1	246	11	33	21.8044
GCCCUCCGCGCUCAUCUGGGGC	chr9:139735160-139735511(+)$1	351	197	219	22.4295
GCCUGUGCUCUUAUAUCCAGGU	chr1:161193053-161193263(-)$1	210	187	209	22.4295
GGUACCCGAAUCCCUAUAGGUA	chr5:176730755-176731124(+)$1	369	304	326	22.6812
UAUUUUAAUUACUGCUAUAAAU	chr9:90345917-90346231(+)$1	314	271	293	22.1481
CCUCUCGAUCACAUACAGAAGA	chr1:46775856-46776089(+)$1	233	61	83	22.7187
AGUGUGUUGUUCUUGUUCACAG	chr2:217069814-217070095(+)$1	281	74	96	22.6596
GGGGGAGUGGAAUAGUAUCCUC	chr12:56119247-56119501(-)$1	254	185	207	22.6700
GACUGAGCUCCCCCUUCCCAGU	chr19:45452363-45452636(+)$1	273	206	228	20.8289
CCUGGAAGUCAACGUCACCACC	chr14:102515947-102516235(+)$1	288	207	229	21.1273
GGGACCUGUACUAGCCAUGGUU	chr6:33258012-33258295(+)$1	283	38	60	22.0586
UCUGCUAUAACAAUAAACUGUA	chr14:21484904-21485201(-)$1	297	238	260	20.9376
CACCAUGAUUCUUACAGUUGGU	chr6:75949915-75950178(-)$1	263	139	161	22.1481
UUCUUGUGUUGGUUUUUUAAAG	chr19:18390720-18390949(-)$1	229	173	195	20.4836
CGCUUGAGAUCUUCAAACAAGC	chr5:135397121-135397369(+)$1	248	109	131	22.5830
ACGCUGACCUCUACCUCCAGCU	chr16:30904432-30904706(-)$1	274	235	257	21.5923
UGGGCUGUGCCAAGUGUGCCCA	chr16:56643068-56643300(+)$1	232	127	149	22.3717
CGCUUGAGAUCUUCAAACAAGC	chr5:135397088-135397321(+)$1	233	142	164	22.5830
AGAGGCCGUAUUAAUUAGCCUG	chr16:31202618-31202831(+)$1	213	127	149	22.3703
AUACGUCCUCUUUGUCAACGUG	chr5:150404908-150405127(+)$1	219	90	112	22.8937
UGUAUCUUUAAAGACUUGAUGA	chr12:9220308-9220535(-)$1	227	185	207	22.7685
CUGCUUCCUUCCCUUCUUAGCU	chr11:63765093-63765405(+)$1	312	248	270	19.2879
AUCCAGGAACACAUCGAUCUGG	chr1:24021049-24021265(+)$1	216	160	182	22.0586
CUCCUCUCCCUUCCUGUGUGGC	chr10:102744484-102744780(+)$1	296	95	117	20.1172
ACCUGAUCUCUCUGUCUUCAGG	chr16:29882883-29883134(-)$1	251	64	86	22.3325

#DB
((((((...........)))))	chr1:46782123-46782339(+)$1	1	175	197	22.5830
(((.((................	chr17:39679986-39680298(-)$1	1	170	192	19.6737
((((((............))))	chr1:20978772-20979059(-)$1	1	252	274	22.5785
(.(..............).)))	chr11:57509570-57509817(+)$1	1	88	110	19.8117
.(((((...........)))))	chr5:150404927-150405151(+)$1	1	71	93	22.8937
((((((...........)))))	chr15:44085076-44085311(+)$1	1	148	170	21.9963
((((((...........)))).	chr2:88423985-88424205(-)$1	1	137	159	22.5971
((((((...........)))))	chr3:49158580-49158829(-)$1	1	141	163	22.5189
((((((...........)))))	chr8:126033914-126034278(+)$1	1	25	47	22.5189
.(..((............))..	chr12:56510458-56510684(+)$1	1	165	187	21.9033
(((((.............))))	chr7:99751393-99751730(+)$1	1	86	108	22.1374
..((((...........)))).	chr19:5691250-5691521(+)$1	1	19	41	22.7445
(((.((............))))	chr17:6917537-6917907(+)$1	1	188	210	21.9457
.((((............)))).	chr17:34171744-34172137(+)$1	1	300	322	22.3776
((((((............))))	chr6:33384349-33384597(-)$1	1	38	60	22.6770
((((((............))))	chr15:44084427-44084683(+)$1	1	91	113	22.0586
((((((...........)))).	chr2:88423954-88424181(-)$1	1	113	135	22.5971
..((((...........)))).	chr17:73132169-73132442(-)$1	1	197	219	19.7981
((.((............)))))	chr19:18652452-18652745(-)$1	1	129	151	21.6160
(.((((................	chr2:98264365-98264664(+)$1	1	201	223	20.0197
.((((.............))))	chr4:74286727-74286932(+)$1	1	110	132	21.8400
..(((..............)))	chr6:33257491-33257759(+)$1	1	153	175	21.0154
((((((............))))	chr2:219679548-219679857(+)$1	1	33	55	22.0586
)))(((............)))(	chr6:41755379-41755669(+)$1	1	226	248	22.5921
(((.((...........)).))	chr16:31202286-31202531(+)$1	1	187	209	22.0422
((..(............)..))	chr1:161192162-161192380(-)$1	1	96	118	22.0426
(((((................)	chr2:98263750-98264006(+)$1	1	32	54	20.6656
(((((................)	chr6:33385157-33385422(-)$1	1	237	259	20.6656
((((((............))))	chr3:129274196-129274474(-)$1	1	80	102	20.3316
..(((............)))((	chr6:41705367-41705604(-)$1	1	78	100	20.4778
..(((..............)))	chr16:88712422-88712637(-)$1	1	140	162	20.8885
.((................)).	chr18:43664368-43664664(-)$1	1	90	112	19.8238
((..((...........)).))	chr20:34214094-34214340(-)$1	1	11	33	21.8044
(((((............)))))	chr9:139735160-139735511(+)$1	1	197	219	22.4295
(((((............)))))	chr1:161193053-161193263(-)$1	1	187	209	22.4295
)(((((............))))	chr5:176730755-176731124(+)$1	1	304	326	22.6812
(((((.............))))	chr9:90345917-90346231(+)$1	1	271	293	22.1481
((((((...........).)))	chr1:46775856-46776089(+)$1	1	61	83	22.7187
(.((((...........)))).	chr2:217069814-217070095(+)$1	1	74	96	22.6596
((((((...........)))))	chr12:56119247-56119501(-)$1	1	185	207	22.6700
.((((.............))))	chr19:45452363-45452636(+)$1	1	206	228	20.8289
..(((............)))))	chr14:102515947-102516235(+)$1	1	207	229	21.1273
((((((............))))	chr6:33258012-33258295(+)$1	1	38	60	22.0586
(((((..............)))	chr14:21484904-21485201(-)$1	1	238	260	20.9376
(((((.............))))	chr6:75949915-75950178(-)$1	1	139	161	22.1481
(((((..............)))	chr19:18390720-18390949(-)$1	1	173	195	20.4836
)(((((...........)))))	chr5:135397121-135397369(+)$1	1	109	131	22.5830
..((((...........)))).	chr16:30904432-30904706(-)$1	1	235	257	21.5923
.((((............)))))	chr16:56643068-56643300(+)$1	1	127	149	22.3717
)(((((...........)))))	chr5:135397088-135397321(+)$1	1	142	164	22.5830
((((((...........)))).	chr16:31202618-31202831(+)$1	1	127	149	22.3703
.(((((...........)))))	chr5:150404908-150405127(+)$1	1	90	112	22.8937
..((((...........)))).	chr12:9220308-9220535(-)$1	1	185	207	22.7685
..(((.............))).	chr11:63765093-63765405(+)$1	1	248	270	19.2879
((((((............))))	chr1:24021049-24021265(+)$1	1	160	182	22.0586
..((.(...........).)).	chr10:102744484-102744780(+)$1	1	95	117	20.1172
.(((((...........)))))	chr16:29882883-29883134(-)$1	1	64	86	22.3325

#PSSM
f : 0.19	g : 0.14	e : 0.14	" : 0.10	c : 0.08	: : 0.07	d : 0.05	[ : 0.03	= : 0.03	! : 0.03	% : 0.03	# : 0.01	h : 0.01	( : 0.01	$ : 0.01	
e : 0.22	f : 0.17	g : 0.14	c : 0.07	d : 0.07	[ : 0.05	: : 0.05	= : 0.03	" : 0.03	a : 0.01	# : 0.01	! : 0.01	h : 0.01	b : 0.01	( : 0.01	$ : 0.01	% : 0.01	
d : 0.22	e : 0.19	f : 0.17	g : 0.12	c : 0.10	! : 0.05	= : 0.03	b : 0.03	a : 0.01	[ : 0.01	h : 0.01	
d : 0.22	e : 0.17	f : 0.15	g : 0.10	c : 0.10	[ : 0.05	! : 0.05	= : 0.03	b : 0.03	w : 0.01	h : 0.01	y : 0.01	
d : 0.22	e : 0.17	f : 0.15	b : 0.10	g : 0.10	c : 0.10	= : 0.03	w : 0.01	a : 0.01	h : 0.01	y : 0.01	[ : 0.01	
d : 0.15	u : 0.14	e : 0.12	v : 0.10	b : 0.08	w : 0.08	f : 0.08	g : 0.05	y : 0.05	= : 0.03	a : 0.03	c : 0.01	h : 0.01	
t : 0.38	u : 0.33	v : 0.10	y : 0.08	w : 0.08	
t : 0.38	u : 0.33	v : 0.10	y : 0.08	w : 0.08	
t : 0.38	u : 0.33	v : 0.10	y : 0.08	w : 0.08	
t : 0.38	u : 0.33	v : 0.10	y : 0.08	w : 0.08	
t : 0.38	u : 0.33	v : 0.10	y : 0.08	w : 0.08	
t : 0.38	u : 0.33	v : 0.10	y : 0.08	w : 0.08	
t : 0.38	u : 0.33	v : 0.10	y : 0.08	w : 0.08	
t : 0.38	u : 0.33	v : 0.10	y : 0.08	w : 0.08	
t : 0.38	u : 0.33	v : 0.10	y : 0.08	w : 0.08	
t : 0.38	u : 0.33	v : 0.10	y : 0.08	w : 0.08	
t : 0.38	u : 0.33	v : 0.10	y : 0.08	w : 0.08	
u : 0.19	d : 0.17	e : 0.14	v : 0.10	y : 0.08	a : 0.07	w : 0.07	b : 0.05	g : 0.03	c : 0.03	f : 0.01	= : 0.01	
d : 0.21	e : 0.17	y : 0.08	g : 0.08	f : 0.08	b : 0.08	w : 0.07	c : 0.07	] : 0.05	= : 0.03	2 : 0.01	h : 0.01	
d : 0.21	e : 0.19	g : 0.12	f : 0.12	c : 0.10	y : 0.07	b : 0.07	= : 0.03	] : 0.03	2 : 0.01	h : 0.01	
e : 0.22	d : 0.22	g : 0.14	f : 0.14	c : 0.08	y : 0.07	= : 0.03	b : 0.03	3 : 0.01	h : 0.01	
e : 0.26	f : 0.17	g : 0.14	] : 0.07	3 : 0.07	d : 0.05	c : 0.05	y : 0.03	= : 0.03	: : 0.03	5 : 0.03	h : 0.01	2 : 0.01	

#score	1239.5774830842208
#seq	57
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_transcript_m1_run2.txt

#BEAR
ggggggg!!ccc[a[cccmmmmccc]a22ccc4444ggg	chr11:65315400-65315662(-)$1	262	140	179	14.1819
eeeee[bb!!cccddddoooooodddd]ccc22bb]eee	chr4:6621504-6621860(+)$1	356	168	207	11.5906
ccc####ccc"""cccpppppppccc333cccccc====	chr9:139261637-139261889(-)$1	252	94	133	11.7540
iiiiii[ggggggg[ddddmmmmdddd]ggggggg]iii	chr16:1502806-1503054(-)$1	248	186	225	13.3535
ddddeeeee####ddddoooooodddd4444eeeee]dd	chr19:56614575-56614797(-)$1	222	176	215	12.2561
ggggg[ccc####eeeeellleeeee22ccc333ggggg	chr7:5415756-5416006(-)$1	250	32	71	13.7236
dddd[ffffff[a!!ddddllldddd22a4444ffffff	chr3:58097352-58097635(+)$1	283	130	169	12.4692
$$bb"""ccc[eeeeecccmmmmccc333eeeee]cccb	chr7:5430189-5430437(-)$1	248	29	68	12.3454
cccccc!!ggggggg"""bbmmmmbb333ggggggg]cc	chr17:27047557-27047814(+)$1	257	172	211	12.2173
gggggggggggg!!ddddmmmmdddd4444ggggggg>>	chr16:85839165-85839423(+)$1	258	64	103	13.6306
[ccc!!bb[a[ddddcccnnnnnccc22dddd]abbccc	chr5:881185-881445(-)$1	260	194	233	13.3511
ggggggg####cccrrrrrrrrrccc4444ggggggg==	chr17:79653845-79654130(+)$1	285	132	171	13.7330
==============ddddnnnnndddddddd!!ccc!!c	chr1:110170808-110171078(+)$1	270	105	144	12.7921
eeeggggggg"""bb[bblllbb]bb333ggggggg444	chr11:64674195-64674440(-)$1	245	193	232	12.7214
"""ffffffdddd"""cccmmmmccc333dddd]fffff	chr16:70699401-70699659(-)$1	258	177	216	12.5536
!!ggggggg[bba[ccc!!bblllbb22ccc]a]bb]gg	chr6:36890911-36891174(+)$1	263	208	247	11.5408
gggggggdddd]ccc]ccc333dddd333ccc]======	chr20:62592662-62592917(-)$1	255	119	158	11.7596
b!!dddd[ccc"""ddddmmmmdddd333cccddddbb]	chr1:1330800-1331032(-)$1	232	47	86	12.0908
==========!!eeeee[ammmmaeeeee==========	chr16:8998328-8998579(-)$1	251	120	159	14.1603
eeeeaaccc[bbeeeeeooooooeeeee]bb22ccc]a]	chr16:89935827-89936077(+)$1	250	53	92	10.9324
d[dddd[ggggggg[ddddllldddd22ggggggg333d	chr20:17600928-17601206(-)$1	278	79	118	13.6887
c[eeeeeccc!!ccccccnnnnnccc333ccc]ccc]ee	chr7:1511911-1512212(-)$1	301	189	228	15.2706
f[dddd[dddd####cccnnnnnccc22dddd]dddd]f	chr10:101556582-101556796(+)$1	214	23	62	12.5361
ggg!!a$$$$$dddd[cccmmmmccc]dddd]a22gggg	chr19:42863075-42863345(+)$1	270	210	249	11.5333
bccc[ddddbbddddcccnnnnnccc333dddd333bb]	chr2:131102992-131103266(+)$1	274	35	74	13.0367
""eeeee!!bb!!a[ccclllccc]a22bb]eeeee333	chr2:26417993-26418267(-)$1	274	190	229	12.5121
$ccc####===========[ammmma]===========c	chrX:153693239-153693487(+)$1	248	131	170	12.7903
gggg[bb!!dddd[ccc[ammmma]ccc]dddd]bb]gg	chr16:24950804-24951113(-)$1	309	31	70	11.6979
[ffffff!!ccc[ddddoooooodddd22ccc22fffff	chr12:54107557-54107859(-)$1	302	76	115	13.0366
:ggggggg!!gggggggooooooggggggg22ggggggg	chr22:28269689-28269948(-)$1	259	51	90	12.7469
dddd[dddd[ccc!!cccmmmmccc4444cccddddddd	chr17:73895291-73895536(-)$1	245	0	39	11.5304
=======[a[a[ffffffmmmmffffffa]a========	chr17:72769091-72769308(-)$1	217	91	130	12.1918
dddd!!a!!===========lll===========22a22	chr14:105836025-105836281(+)$1	256	49	88	14.1996
fffccc[ccc[ddddcccnnnnnccc22dddd]ccc22c	chr18:683267-683555(-)$1	288	182	221	13.4972
eiiiiiiiiiccc!!eeeeellleeeeeccc]iiiiiii	chr21:44283590-44283867(-)$1	277	122	161	12.8496
:ccc!!============nnnnn============333c	chr8:23428606-23428862(+)$1	256	148	187	15.3211
cc==========!!cccqqqqqqqqccc22=========	chr17:38146162-38146450(+)$1	288	128	167	11.9576
ggggggg[dddd[a!!cccmmmmccc22adddd22gggg	chr15:28520029-28520305(-)$1	276	179	218	13.3778
ff[=========="""ccclllccc55555=========	chr1:11884379-11884642(+)$1	263	141	180	12.7135
iii!!aiiiiiiiiirrrrrrrrriiiiiiiii]a22ii	chr15:42135715-42135976(+)$1	261	90	129	12.7318
:ddddcccbb!!ddddoooooodddd4444bb]ccc333	chr14:24033773-24034019(-)$1	246	188	227	11.6927
ee"""ffffff!!eeeeellleeeee333ffffff333e	chr17:74734180-74734444(+)$1	264	182	221	12.0344
++iiiiiiiii[bb[aooooooa]bb22iiiiiiiii]c	chr10:128810372-128810643(+)$1	271	25	64	13.1290
ddgggggggccc!!ddddoooooodddd]ccc]gggggg	chr21:45153776-45154049(+)$1	273	180	219	13.9264
bb[ffffff[a!!ccc[annnnna]ccc333a]ffffff	chr12:132528546-132528811(+)$1	265	24	63	12.5066
==========[gggggggnnnnnggggggg]========	chr2:232575898-232576162(+)$1	264	139	178	15.0407
eeeee[eeeee[cccddddllldddd]ccc333eeeee4	chr19:625248-625503(-)$1	255	140	179	11.2609
cggggggg[adddd!!bboooooobb333dddd]a333g	chr17:79864677-79864935(-)$1	258	128	167	14.4994
"""=============bbnnnnnbb]=============	chr1:28835198-28835452(+)$1	254	201	240	15.1748
dddd[a"""===========lll===========]a]dd	chr20:61460780-61461035(+)$1	255	77	116	14.4338
##gggggggeeeee[bbannnnna]bb]eeeee]ggggg	chr20:62368717-62368935(+)$1	218	102	141	11.8715
d!!a!!ccciiiiiiiiinnnnniiiiiiiii4444ccc	chr12:6669406-6669698(-)$1	292	114	153	13.9539
dd[ggggggg!!eeeeeooooooeeeee4444ggggggg	chr19:15511583-15511846(-)$1	263	150	189	13.7688
eee[ccc[a!!cccrrrrrrrrrccc22accceeeee]b	chr17:73872773-73873040(-)$1	267	141	180	11.7749
f[bb"""ccc!!dddd[ccclllccc22dddd22ccc33	chr17:79210501-79210765(-)$1	264	115	154	13.2153
hhhh===========cccnnnnnccc333==========	chr9:139838445-139838720(-)$1	275	103	142	17.3051
cccffffffgggggggcccmmmmccc]ggggggg]ffff	chr1:156351705-156351947(+)$1	242	75	114	11.9245

#otherMatches

#Seq PSSM
CCGCAGAGACUGAUGAGUGCCGACUGAACCAGAACAUCU	chr11:65315400-65315662(-)$1	262	140	179	14.1819
GGUCCGUGGUGGCAGUGGAGGAGCGCUCGCUCACAGGGA	chr4:6621504-6621860(+)$1	356	168	207	11.5906
AGGAUCCCGCUCUGUGCCCUGCCCACCCUGUGCCUGGGG	chr9:139261637-139261889(-)$1	252	94	133	11.7540
UGAUUGAGGCCGUGCUGGUGGCCGCCGUCACGGCCACAG	chr16:1502806-1503054(-)$1	248	186	225	13.3535
CUUCUGUCUCAUCCCCUUCUAACAGGGACCCAGACAUGG	chr19:56614575-56614797(-)$1	222	176	215	12.2561
GAGAGCCCAGCUCCCCACUGUGUGGGUGUGGCCCCUCUC	chr7:5415756-5416006(-)$1	250	32	71	13.7236
GGGGCUUUCCUACUAAGACUGUGUCUCUGCUACAGGAAA	chr3:58097352-58097635(+)$1	283	130	169	12.4692
AUGCAUUGCCCUGAGGAGCUGCUGUUAAACCUCAAGGCG	chr7:5430189-5430437(-)$1	248	29	68	12.3454
GCCCCUCCUAAAGCUGAAGCCAAAGCGAAGGCUUUAAAG	chr17:27047557-27047814(+)$1	257	172	211	12.2173
CUGUGUUUCCUCCUUCACAAGUGUGGUUUUGGGGAGAAG	chr16:85839165-85839423(+)$1	258	64	103	13.6306
UGGUCAACACGGCCGAGCCGGACGCUGAUGGUGGGUGCC	chr5:881185-881445(-)$1	260	194	233	13.3511
GGAGGGGCCCUGCCCUGACCACUGGCCCAACCCUUCCCU	chr17:79653845-79654130(+)$1	285	132	171	13.7330
CGUGGGCUGUGGGACUGAGUCAGUCAGGGGACCAGGAGU	chr1:110170808-110171078(+)$1	270	105	144	12.7921
UGGUGCUGGACAUGGAGCACGGUACCCUCUUCAGCGUCU	chr11:64674195-64674440(-)$1	245	193	232	12.7214
CCCUCUGUCUGCAACCGCCUGCUGGCCUCUGCAUGGCAG	chr16:70699401-70699659(-)$1	258	177	216	12.5536
AAGGCUAUGUCGACACCACCCACUGGAAGGUCUACGUUA	chr6:36890911-36891174(+)$1	263	208	247	11.5408
UCCAAGGGCUGGGGCACUGGCCUGCCUAUGCAUUGCAGG	chr20:62592662-62592917(-)$1	255	119	158	11.7596
GUUAGGUGCUCAUAGUUGGAGGUAACGACGGGAUCUCAG	chr1:1330800-1331032(-)$1	232	47	86	12.0908
AUCUGCAGGGGUCAAAGAGGAUGCCUUUGUCCUGCAGGU	chr16:8998328-8998579(-)$1	251	120	159	14.1603
AGGUCCCAGACUGGGGAGGGAGGUCCCCUAGCACUGAGU	chr16:89935827-89936077(+)$1	250	53	92	10.9324
GCACCCCCGGGGCUUCCUAAGUUGGGUCAGUCCCGCUCG	chr20:17600928-17601206(-)$1	278	79	118	13.6887
GAGGAGAGCUCAGCCGGCUCCUUGCCCCUGGUCAGCGUC	chr7:1511911-1512212(-)$1	301	189	228	15.2706
GCAGGGUAAGGUGAUGCUCUUUUAGCUGUCUUCCCCUUC	chr10:101556582-101556796(+)$1	214	23	62	12.5361
GGGGACACCAUGGUGGUUCUUGGGGGGCGCUCGGACCCU	chr19:42863075-42863345(+)$1	270	210	249	11.5333
CCCCAGUUCCCGCCUCAAGAUGUUUGCAAAGGUACUGGU	chr2:131102992-131103266(+)$1	274	35	74	13.0367
CCCGUGGACAAGAUGCAGCUGCUGGAGAUUAUCACGACC	chr2:26417993-26418267(-)$1	274	190	229	12.5121
AGAUCCUGCCCAGUGGGGACCUCCUGAUCCCCGUUGGGG	chrX:153693239-153693487(+)$1	248	131	170	12.7903
GAGUUGCUCAGGGGUGGCCAUUAGUCUGGUCCUUGCCGC	chr16:24950804-24951113(-)$1	309	31	70	11.6979
CCUGUUUAGUCUAAUGAUACCCCUCAUCCAGAGGAGACA	chr12:54107557-54107859(-)$1	302	76	115	13.0366
CCUGUGUUUUGGUAGCUGCGAAGAGCUAUUCUGGCACGG	chr22:28269689-28269948(-)$1	259	51	90	12.7469
UUGCUCAGUUCUCUCUUGACCUCAGCCUUGAGACUGGCA	chr17:73895291-73895536(-)$1	245	0	39	11.5304
UGGGGAGUGUGUGUGAUAGCCCUGUCACCUCCUCCUCAG	chr17:72769091-72769308(-)$1	217	91	130	12.1918
CUCCCACGGCGGGCCUGGGUGCGGCCUGGGCCUGAGGAA	chr14:105836025-105836281(+)$1	256	49	88	14.1996
AUGCCAACCAGCGCUGGGAUGUGCCUGAGGCGGUGGAGU	chr18:683267-683555(-)$1	288	182	221	13.4972
CUCCUGGAAGCUAAUGGGGGUGUCUUUCUGGCCUUCUAG	chr21:44283590-44283867(-)$1	277	122	161	12.8496
AUGGCUUGGCUUCAUUCCGACCUGGGGUGGGGCCACAUC	chr8:23428606-23428862(+)$1	256	148	187	15.3211
GUGGGGAGUUGGAUGACCCUACUCUGUUGACCAACUCUC	chr17:38146162-38146450(+)$1	288	128	167	11.9576
GAGGGGCUCGCCAGAGUGGGAUCCCGAGCGGCGCUGUCU	chr15:28520029-28520305(-)$1	276	179	218	13.3778
UUUCCUUUUUCACCCUGCCCAGGGCUCUUCGUGGAGAAG	chr1:11884379-11884642(+)$1	263	141	180	12.7135
CAGACCCAGCUUUCCAUUCUCUGGGGAGGGUUGAGAGCU	chr15:42135715-42135976(+)$1	261	90	129	12.7318
UGCGGUCCUGUUUGAGACAGUACUCACCAUCAUGGAUAU	chr14:24033773-24034019(-)$1	246	188	227	11.6927
GGAUUGUCAGUGGCUUCGCCCCGAGGAGAGCUGACUGCC	chr17:74734180-74734444(+)$1	264	182	221	12.0344
CUCGGUGACGAUGAUCUCUUAUGUUCCCUUGUUACCGUG	chr10:128810372-128810643(+)$1	271	25	64	13.1290
GAUUUGAGAUUGACGCGGUGAACUCUGUCCAGUUUUCAA	chr21:45153776-45154049(+)$1	273	180	219	13.9264
CAGGCUGCUGCUUGUGGGGGUGAUGCAUUGUGGAGCAGU	chr12:132528546-132528811(+)$1	265	24	63	12.5066
UUCCUUCUUCCCUUUUGAAGGACUUAAAGGAGAAGAAGG	chr2:232575898-232576162(+)$1	264	139	178	15.0407
CCCUGUCCCCUGCUGAGCUGGUGGCUACAGAGAAGGGGU	chr19:625248-625503(-)$1	255	140	179	11.2609
CCCCGCCAACCUGCUCCCUCUCUUGGCUUGCAGUGCCCU	chr17:79864677-79864935(-)$1	258	128	167	14.4994
AUAUAGAAGGGAGAGUAGGUAAACUGAUUUUUUUUUUUA	chr1:28835198-28835452(+)$1	254	201	240	15.1748
GGCUGCAGCCGCUUUCUCUCUGGGAGGGGAGGCGAGGGG	chr20:61460780-61461035(+)$1	255	77	116	14.4338
UUGGGGCUGCCAGGUGGCGCCAGGUCCCCUUGGCCAGCC	chr20:62368717-62368935(+)$1	218	102	141	11.8715
GAGGCUGGGCUGGGGGGCUCUUUGCCCCUUAGAGCUCCC	chr12:6669406-6669698(-)$1	292	114	153	13.9539
UUACCUCCUUUUCCCUUUCAGAUGAGGGCACCGAGGGGG	chr19:15511583-15511846(-)$1	263	150	189	13.7688
CACAGGCUGAGCAGUCCAAAGUCCUGAGCGCCGUGGAGG	chr17:73872773-73873040(-)$1	267	141	180	11.7749
GUGUCCCGUGUCCGGCCUGCCCAGCACUGCUGACCGCCC	chr17:79210501-79210765(-)$1	264	115	154	13.2153
GCCCGCUCUCGGCCUCCCUUCCCGGGCCUGGGCUGAGGG	chr9:139838445-139838720(-)$1	275	103	142	17.3051
CCUUUCCUCCCGCCUCUCCAACAGGAUGAGGUGGUGGGG	chr1:156351705-156351947(+)$1	242	75	114	11.9245

#DB
(((((((..(((.(.(((....))).)..)))....)))	chr11:65315400-65315662(-)$1	1	140	179	14.1819
(((((.((..(((((((......)))).)))..)).)))	chr4:6621504-6621860(+)$1	1	168	207	11.5906
(((....(((...(((.......)))...))))))))))	chr9:139261637-139261889(-)$1	1	94	133	11.7540
((((((.(((((((.((((....)))).))))))).)))	chr16:1502806-1503054(-)$1	1	186	225	13.3535
(((((((((....((((......))))....))))).))	chr19:56614575-56614797(-)$1	1	176	215	12.2561
(((((.(((....(((((...)))))..)))...)))))	chr7:5415756-5416006(-)$1	1	32	71	13.7236
((((.((((((.(..((((...))))..)....))))))	chr3:58097352-58097635(+)$1	1	130	169	12.4692
..((...(((.((((((((....)))...))))).))))	chr7:5430189-5430437(-)$1	1	29	68	12.3454
)))(((..(((((((...((....))...))))))).))	chr17:27047557-27047814(+)$1	1	172	211	12.2173
((((((((((((..((((....))))....)))))))..	chr16:85839165-85839423(+)$1	1	64	103	13.6306
.(((..((.(.(((((((.....)))..)))).))))))	chr5:881185-881445(-)$1	1	194	233	13.3511
(((((((....(((.........)))....)))))))))	chr17:79653845-79654130(+)$1	1	132	171	13.7330
))))))))))))))((((.....))))((((..(((..(	chr1:110170808-110171078(+)$1	1	105	144	12.7921
((((((((((...((.((...)).))...)))))))...	chr11:64674195-64674440(-)$1	1	193	232	12.7214
...((((((((((...(((....)))...)))).)))))	chr16:70699401-70699659(-)$1	1	177	216	12.5536
..(((((((.(((.(((..((...))..))).).)).))	chr6:36890911-36891174(+)$1	1	208	247	11.5408
))))))))))).))).)))...))))...))).))))))	chr20:62592662-62592917(-)$1	1	119	158	11.7596
(..((((.(((...((((....))))...))))))))).	chr1:1330800-1331032(-)$1	1	47	86	12.0908
((((((((((..(((((.(....))))))))))))))))	chr16:8998328-8998579(-)$1	1	120	159	14.1603
(((((((((.(((((((......))))).))..))).).	chr16:89935827-89936077(+)$1	1	53	92	10.9324
(.((((.(((((((.((((...))))..)))))))...)	chr20:17600928-17601206(-)$1	1	79	118	13.6887
(.((((((((..((((((.....)))...))).))).))	chr7:1511911-1512212(-)$1	1	189	228	15.2706
(.((((.((((....(((.....)))..)))).)))).)	chr10:101556582-101556796(+)$1	1	23	62	12.5361
(((..(.....((((.(((....))).)))).)..))))	chr19:42863075-42863345(+)$1	1	210	249	11.5333
((((.(((((((((((((.....)))...))))...)).	chr2:131102992-131103266(+)$1	1	35	74	13.0367
..(((((..((..(.(((...))).)..)).)))))...	chr2:26417993-26418267(-)$1	1	190	229	12.5121
.(((....(((((((((((.(....).))))))))))))	chrX:153693239-153693487(+)$1	1	131	170	12.7903
((((.((..((((.(((.(....).))).)))).)).))	chr16:24950804-24951113(-)$1	1	31	70	11.6979
.((((((..(((.((((......))))..)))..)))))	chr12:54107557-54107859(-)$1	1	76	115	13.0366
.(((((((..(((((((......)))))))..)))))))	chr22:28269689-28269948(-)$1	1	51	90	12.7469
((((.((((.(((..(((....)))....))))))))))	chr17:73895291-73895536(-)$1	1	0	39	11.5304
(((((((.(.(.((((((....))))))).)))))))))	chr17:72769091-72769308(-)$1	1	91	130	12.1918
((((..(..(((((((((((...)))))))))))..)..	chr14:105836025-105836281(+)$1	1	49	88	14.1996
((((((.(((.(((((((.....)))..)))).)))..)	chr18:683267-683555(-)$1	1	182	221	13.4972
(((((((((((((..(((((...)))))))).)))))))	chr21:44283590-44283867(-)$1	1	122	161	12.8496
.(((..((((((((((((.....))))))))))))...)	chr8:23428606-23428862(+)$1	1	148	187	15.3211
))((((((((((..(((........)))..)))))))))	chr17:38146162-38146450(+)$1	1	128	167	11.9576
(((((((.((((.(..(((....)))..)))))..))))	chr15:28520029-28520305(-)$1	1	179	218	13.3778
((.((((((((((...(((...))).....)))))))))	chr1:11884379-11884642(+)$1	1	141	180	12.7135
(((..((((((((((.........))))))))).)..))	chr15:42135715-42135976(+)$1	1	90	129	12.7318
.(((((((((..((((......))))....)).)))...	chr14:24033773-24034019(-)$1	1	188	227	11.6927
((...((((((..(((((...)))))...))))))...)	chr17:74734180-74734444(+)$1	1	182	221	12.0344
..(((((((((.((.(......).))..))))))))).)	chr10:128810372-128810643(+)$1	1	25	64	13.1290
))((((((((((..((((......)))).))).))))))	chr21:45153776-45154049(+)$1	1	180	219	13.9264
((.((((((.(..(((.(.....).)))...).))))))	chr12:132528546-132528811(+)$1	1	24	63	12.5066
((((((((((.(((((((.....))))))).))))))))	chr2:232575898-232576162(+)$1	1	139	178	15.0407
(((((.(((((.(((((((...)))).)))...))))).	chr19:625248-625503(-)$1	1	140	179	11.2609
((((((((.(((((..((......))...)))).)...)	chr17:79864677-79864935(-)$1	1	128	167	14.4994
...(((((((((((((((.....)).)))))))))))))	chr1:28835198-28835452(+)$1	1	201	240	15.1748
((((.(...(((((((((((...))))))))))).).))	chr20:61460780-61461035(+)$1	1	77	116	14.4338
..((((((((((((.(((.....).)).))))).)))))	chr20:62368717-62368935(+)$1	1	102	141	11.8715
(..(..((((((((((((.....)))))))))....)))	chr12:6669406-6669698(-)$1	1	114	153	13.9539
((.(((((((..(((((......)))))....)))))))	chr19:15511583-15511846(-)$1	1	150	189	13.7688
(((.(((.(..(((.........)))..))))))))).)	chr17:73872773-73873040(-)$1	1	141	180	11.7749
(.((...(((..((((.(((...)))..))))..)))..	chr17:79210501-79210765(-)$1	1	115	154	13.2153
))))((((((((((((((.....)))...))))))))))	chr9:139838445-139838720(-)$1	1	103	142	17.3051
(((((((((((((((((((....))).))))))).))))	chr1:156351705-156351947(+)$1	1	75	114	11.9245

#PSSM
d : 0.15	g : 0.14	e : 0.12	c : 0.10	= : 0.07	f : 0.07	" : 0.05	b : 0.05	: : 0.05	i : 0.03	$ : 0.03	[ : 0.03	! : 0.01	+ : 0.01	# : 0.01	h : 0.01	
g : 0.17	c : 0.14	d : 0.14	e : 0.10	= : 0.07	[ : 0.07	i : 0.05	" : 0.05	! : 0.05	f : 0.05	$ : 0.01	+ : 0.01	b : 0.01	# : 0.01	h : 0.01	
g : 0.22	d : 0.14	e : 0.12	c : 0.12	= : 0.08	i : 0.07	" : 0.05	[ : 0.05	b : 0.03	! : 0.03	f : 0.03	h : 0.01	
g : 0.24	d : 0.15	= : 0.12	c : 0.10	e : 0.08	f : 0.07	i : 0.05	b : 0.03	! : 0.03	# : 0.01	" : 0.01	a : 0.01	[ : 0.01	h : 0.01	
g : 0.22	= : 0.14	! : 0.10	e : 0.08	[ : 0.08	f : 0.07	d : 0.07	i : 0.05	" : 0.05	c : 0.05	# : 0.03	a : 0.01	
g : 0.21	= : 0.14	f : 0.10	d : 0.08	c : 0.07	! : 0.07	a : 0.07	[ : 0.05	i : 0.05	e : 0.05	# : 0.03	" : 0.03	b : 0.01	
g : 0.21	= : 0.15	f : 0.10	c : 0.08	[ : 0.07	e : 0.07	b : 0.05	" : 0.05	d : 0.05	i : 0.05	# : 0.03	! : 0.01	$ : 0.01	a : 0.01	
g : 0.17	c : 0.15	= : 0.14	! : 0.10	f : 0.08	d : 0.07	[ : 0.07	i : 0.05	b : 0.03	e : 0.03	# : 0.03	$ : 0.01	" : 0.01	
c : 0.15	g : 0.15	= : 0.15	! : 0.12	f : 0.08	d : 0.08	i : 0.05	e : 0.03	[ : 0.03	a : 0.03	# : 0.01	$ : 0.01	b : 0.01	" : 0.01	
= : 0.19	c : 0.15	g : 0.12	d : 0.08	[ : 0.08	i : 0.07	! : 0.05	# : 0.05	b : 0.05	f : 0.03	a : 0.03	e : 0.03	$ : 0.01	
= : 0.15	c : 0.12	g : 0.10	d : 0.10	! : 0.10	[ : 0.07	b : 0.07	# : 0.05	i : 0.05	" : 0.03	f : 0.03	a : 0.03	e : 0.03	$ : 0.01	
= : 0.15	c : 0.14	d : 0.14	! : 0.14	g : 0.12	[ : 0.07	" : 0.05	# : 0.05	e : 0.03	b : 0.03	i : 0.03	] : 0.01	
d : 0.15	c : 0.14	= : 0.14	g : 0.10	! : 0.10	e : 0.08	[ : 0.05	" : 0.05	# : 0.05	a : 0.03	i : 0.03	f : 0.01	b : 0.01	
d : 0.17	c : 0.12	e : 0.12	= : 0.12	g : 0.10	! : 0.10	a : 0.05	" : 0.05	b : 0.03	[ : 0.03	i : 0.03	# : 0.01	f : 0.01	
d : 0.22	c : 0.14	[ : 0.10	e : 0.10	= : 0.10	! : 0.08	g : 0.07	r : 0.03	" : 0.03	i : 0.03	b : 0.01	# : 0.01	f : 0.01	
c : 0.24	d : 0.22	e : 0.12	= : 0.08	" : 0.05	r : 0.05	g : 0.05	[ : 0.03	! : 0.03	] : 0.01	f : 0.01	a : 0.01	b : 0.01	i : 0.01	
c : 0.33	d : 0.19	e : 0.10	b : 0.07	= : 0.07	r : 0.05	g : 0.03	o : 0.03	[ : 0.03	p : 0.01	" : 0.01	f : 0.01	i : 0.01	
c : 0.29	o : 0.14	d : 0.14	= : 0.07	e : 0.05	r : 0.05	b : 0.05	[ : 0.03	a : 0.03	p : 0.01	" : 0.01	! : 0.01	f : 0.01	q : 0.01	g : 0.01	i : 0.01	
n : 0.22	o : 0.17	c : 0.14	m : 0.08	d : 0.07	l : 0.07	r : 0.05	= : 0.05	a : 0.03	p : 0.01	b : 0.01	! : 0.01	e : 0.01	q : 0.01	
m : 0.22	n : 0.22	o : 0.17	l : 0.14	r : 0.05	b : 0.03	= : 0.03	p : 0.01	3 : 0.01	[ : 0.01	e : 0.01	q : 0.01	c : 0.01	
m : 0.24	n : 0.22	l : 0.21	o : 0.17	r : 0.05	p : 0.01	b : 0.01	3 : 0.01	a : 0.01	q : 0.01	
m : 0.26	n : 0.22	o : 0.17	l : 0.15	r : 0.05	e : 0.03	p : 0.01	b : 0.01	3 : 0.01	c : 0.01	q : 0.01	
n : 0.22	m : 0.17	o : 0.14	d : 0.12	l : 0.08	c : 0.07	r : 0.05	e : 0.03	p : 0.01	b : 0.01	f : 0.01	q : 0.01	a : 0.01	
c : 0.33	d : 0.21	e : 0.08	a : 0.07	= : 0.05	m : 0.03	] : 0.03	g : 0.03	o : 0.03	l : 0.01	f : 0.01	q : 0.01	r : 0.01	b : 0.01	i : 0.01	
c : 0.31	d : 0.22	e : 0.10	b : 0.10	] : 0.07	= : 0.05	g : 0.03	i : 0.03	m : 0.01	f : 0.01	q : 0.01	
c : 0.31	d : 0.22	e : 0.10	b : 0.10	= : 0.05	] : 0.03	a : 0.03	g : 0.03	i : 0.03	4 : 0.01	f : 0.01	5 : 0.01	
3 : 0.21	2 : 0.21	d : 0.10	4 : 0.07	e : 0.07	] : 0.07	= : 0.07	c : 0.05	g : 0.03	i : 0.03	a : 0.01	f : 0.01	5 : 0.01	b : 0.01	
2 : 0.24	3 : 0.21	4 : 0.08	= : 0.08	e : 0.07	c : 0.07	] : 0.05	d : 0.05	g : 0.05	i : 0.03	f : 0.01	5 : 0.01	
3 : 0.22	4 : 0.10	d : 0.10	c : 0.08	g : 0.08	= : 0.08	a : 0.07	2 : 0.05	] : 0.05	i : 0.05	e : 0.03	b : 0.01	5 : 0.01	
c : 0.24	d : 0.19	g : 0.12	= : 0.12	4 : 0.10	i : 0.05	e : 0.03	b : 0.03	] : 0.01	2 : 0.01	5 : 0.01	f : 0.01	3 : 0.01	
c : 0.22	d : 0.19	= : 0.15	g : 0.12	4 : 0.05	i : 0.05	e : 0.03	b : 0.03	] : 0.03	3 : 0.03	2 : 0.01	a : 0.01	f : 0.01	
= : 0.19	c : 0.15	d : 0.15	g : 0.12	e : 0.07	2 : 0.05	] : 0.05	i : 0.05	3 : 0.03	4 : 0.03	! : 0.01	b : 0.01	f : 0.01	a : 0.01	
= : 0.19	g : 0.15	] : 0.14	d : 0.12	e : 0.08	2 : 0.07	4 : 0.05	i : 0.05	3 : 0.03	a : 0.03	c : 0.01	! : 0.01	f : 0.01	
= : 0.21	g : 0.17	c : 0.10	] : 0.10	e : 0.08	2 : 0.07	f : 0.05	d : 0.05	4 : 0.03	3 : 0.03	i : 0.03	b : 0.01	a : 0.01	
g : 0.19	= : 0.17	c : 0.12	f : 0.08	b : 0.07	e : 0.07	] : 0.05	d : 0.05	2 : 0.05	4 : 0.03	i : 0.03	a : 0.03	3 : 0.01	
g : 0.19	= : 0.17	c : 0.12	f : 0.08	3 : 0.08	e : 0.07	b : 0.05	d : 0.05	4 : 0.03	] : 0.03	2 : 0.03	i : 0.03	a : 0.01	
g : 0.17	= : 0.17	] : 0.12	3 : 0.10	f : 0.08	c : 0.07	e : 0.05	i : 0.05	b : 0.03	d : 0.03	2 : 0.03	! : 0.01	4 : 0.01	a : 0.01	
= : 0.19	g : 0.17	3 : 0.12	f : 0.08	c : 0.07	e : 0.05	i : 0.05	d : 0.05	] : 0.05	b : 0.03	2 : 0.03	> : 0.01	! : 0.01	4 : 0.01	a : 0.01	
g : 0.19	= : 0.17	c : 0.14	f : 0.10	d : 0.07	e : 0.05	i : 0.05	] : 0.05	3 : 0.05	b : 0.03	4 : 0.03	> : 0.01	2 : 0.01	

#score	739.892533697219
#seq	57
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_UTR_m1_run2.txt

#BEAR
cccddddtttttttttttdddd]ccc:E	chr11:62360765-62361019(-)$1	254	173	201	15.8313
::ddddvvvvvvvvvvvvvdddd:eeee	chr7:44618298-44618566(-)$1	268	174	202	18.5737
hhhyyyyyyyyyyyyyyyyhhhhhhhh]	chr14:102231827-102232080(+)$1	253	52	80	18.3025
=====yyyyyyyyyyyyyyyy=======	chr17:56081909-56082161(-)$1	252	14	42	21.5590
^^^^^^^^^^^^^^^^^^^=========	chr19:15347875-15348146(-)$1	271	159	187	20.7635
^^^^^^^^^^^^^^^^^^^^^ggggggg	chr1:32636744-32636976(+)$1	232	69	97	20.9566
ffffffwwwwwwwwwwwwwwffffffcc	chr9:123522757-123523023(-)$1	266	99	127	20.6678
!ffffffuuuuuuuuuuuuffffff22a	chrX:150574974-150575236(+)$1	262	176	204	19.7234
^^^^^^^^^^^^^^^^^^^=========	chrX:73808166-73808453(-)$1	287	48	76	20.7635
^^^^^^^^^^^^^^^^^^^^^ggggggg	chr1:21070008-21070230(-)$1	222	50	78	20.9566
ccc[bbvvvvvvvvvvvvvbb]cccddd	chr1:204522196-204522455(+)$1	259	96	124	20.5103
!eeeeeyyyyyyyyyyyyyyyyeeeee2	chr9:134067478-134067725(+)$1	247	176	204	20.3664
:eeeeevvvvvvvvvvvvveeeee::::	chr1:33145873-33146104(+)$1	231	4	32	17.1904
^^^^^^^^^^^^^^^^^^^bb]a]gggg	chr21:45179969-45180232(+)$1	263	87	115	20.2479
^^^^^^^^^^^^^^^^^^^hhhhhhhh]	chr14:81686746-81687065(-)$1	319	71	99	18.6119
^^^^^^^^^^^^^^^^^^^eeeee]fff	chr3:10142982-10143239(+)$1	257	85	113	20.4674
!ffffffxxxxxxxxxxxxxxxffffff	chr1:167758026-167758246(+)$1	220	126	154	17.1068
::ddddvvvvvvvvvvvvvdddd:eeee	chr1:6582805-6583048(-)$1	243	177	205	18.5737
^^^^^^^^^^^^^^^^^^^=========	chr4:77996929-77997146(-)$1	217	120	148	20.7635
ccc[cccuuuuuuuuuuuuccc]ccc]d	chr11:65764639-65764905(-)$1	266	43	71	21.0288
ffffffvvvvvvvvvvvvvffffffFFF	chr11:3012378-3012646(-)$1	268	37	65	19.5037
[a[dddduuuuuuuuuuuudddd22a]c	chr17:74731367-74731584(-)$1	217	145	173	20.6013
^^^^^^^^^^^^^^^^^^^^dddd]ccc	chr17:30701149-30701411(+)$1	262	87	115	20.4876
ffff[ccctttttttttttccc]fffff	chr22:38879928-38880145(-)$1	217	92	120	17.7415
iiiiii^^^^^^^^^^^^^^^^^^iiii	chr12:133348986-133349236(-)$1	250	83	111	18.7417
eeeeee^^^^^^^^^^^^^^^^^^^^^e	chr1:113212896-113213163(+)$1	267	234	262	17.8845
hhhhhhuuuuuuuuuuuuhhhhhhhh]g	chrX:48770824-48771115(-)$1	291	154	182	16.5727
======zzzzzzzzzzzzzzzzz=====	chr3:152881388-152881617(+)$1	229	27	55	14.7349
:eeeeevvvvvvvvvvvvveeeee:===	chr6:109688912-109689217(-)$1	305	40	68	20.3579
"cccxxxxxxxxxxxxxxxccc22ffff	chr22:20114584-20114815(+)$1	231	46	74	18.6338
^^^^^^^^^^^^^^^^^^^eeeee]ccc	chr5:133707144-133707375(+)$1	231	103	131	20.6478
ggggg[bbtttttttttttbbggggggg	chr19:5205790-5206106(-)$1	316	239	267	17.6176
^^^^^^^^^^^^^^^^^^^^^ccc]ccc	chr6:33269245-33269498(-)$1	253	27	55	20.7776
heeeeewwwwwwwwwwwwwweeeee]hh	chr2:85771986-85772225(+)$1	239	24	52	20.9569
!ffffffxxxxxxxxxxxxxxxffffff	chr1:167758046-167758271(+)$1	225	106	134	17.1068
iiddddvvvvvvvvvvvvvdddd]iiii	chr19:2233577-2233852(-)$1	275	205	233	21.6926
"eeeeevvvvvvvvvvvvveeeee]ddd	chr11:27516821-27517126(-)$1	305	255	283	21.7529
ii!!bbwwwwwwwwwwwwwwbb333iii	chr20:61827313-61827582(-)$1	269	52	80	21.3180
eee[bbwwwwwwwwwwwwwwbb]eeeee	chr21:34896523-34896795(-)$1	272	223	251	20.4798
ddddddxxxxxxxxxxxxxxxdddd]dd	chr2:113420842-113421059(+)$1	217	12	40	17.4498
[dddd^^^^^^^^^^^^^^^^^^^dddd	chr22:21304584-21304811(+)$1	227	28	56	18.3148
!!ddddtttttttttttddddggggggg	chr15:41572623-41572896(+)$1	273	33	61	17.9480
^^^^^^^^^^^^^^^^^^^ggggggg]h	chr5:36183280-36183537(+)$1	257	72	100	20.3495
ffffffvvvvvvvvvvvvvffffff22c	chr11:3012446-3012698(-)$1	252	89	117	20.3658
dddyyyyyyyyyyyyyyyydddd22fff	chr15:41573168-41573454(+)$1	286	245	273	20.1836
!!cccwwwwwwwwwwwwwwccc22eeee	chr3:133307584-133307812(+)$1	228	97	125	21.4288
"eeeeevvvvvvvvvvvvveeeeeffff	chr10:104209487-104209737(+)$1	250	17	45	21.9314
^^^^^^^^^^^^^^^^^^^eeeee333c	chr3:160154423-160154692(-)$1	269	27	55	20.6773
^^^^^^^^^^^^^^^^^^^^^^ffffff	chr7:100277606-100277895(-)$1	289	85	113	20.3239
cffffffuuuuuuuuuuuuffffff:::	chr11:47489675-47489925(-)$1	250	75	103	16.9715
eeee[auuuuuuuuuuuua]eeeee]cc	chr12:76441726-76441980(-)$1	254	173	201	21.1941
##ddddvvvvvvvvvvvvvdddd4444f	chr7:148700599-148700861(-)$1	262	163	191	21.5466
H:ddddtttttttttttdddd=======	chr7:56147870-56148185(+)$1	315	110	138	16.3105
:eeeeevvvvvvvvvvvvveeeeeccc[	chr16:3777269-3777583(-)$1	314	31	59	21.0945
cc!!ddddtttttttttttdddd22ccc	chr6:24719240-24719490(-)$1	250	37	65	17.6868
:gggggggtttttttttttggggggg::	chr8:26268722-26268978(+)$1	256	225	253	14.9518
======vvvvvvvvvvvvv=========	chr2:188330017-188330276(-)$1	259	217	245	22.2117

#otherMatches

#Seq PSSM
AGCUGGCAUCAACCCCAGGCCACGCUCG	chr11:62360765-62361019(-)$1	254	173	201	15.8313
cccggguucaaaugauucuccugccuca	chr7:44618298-44618566(-)$1	268	174	202	18.5737
UGACAUUCCCAUGCUGCUUUCAAGCCuu	chr14:102231827-102232080(+)$1	253	52	80	18.3025
UUGCUUUGCUUUUUAAACCUUGGCAAUU	chr17:56081909-56082161(-)$1	252	14	42	21.5590
guuuuuguuuuuguuuuuUACUGAGAAA	chr19:15347875-15348146(-)$1	271	159	187	20.7635
AAUUUGCACCuuuuuuuauuuuuauuuu	chr1:32636744-32636976(+)$1	232	69	97	20.9566
uguuuuuuuuguAUGuuuuugagacaga	chr9:123522757-123523023(-)$1	266	99	127	20.6678
ccUUAUUGACCAUUUUCUAAAUAAGCAC	chrX:150574974-150575236(+)$1	262	176	204	19.7234
AAAAACUCACUUCUAGUCUGAAACAUUU	chrX:73808166-73808453(-)$1	287	48	76	20.7635
uuauuuuuuauuauuauuauuauuuuug	chr1:21070008-21070230(-)$1	222	50	78	20.9566
gcccagcUUAAACUAUUUUCUUGGUCUG	chr1:204522196-204522455(+)$1	259	96	124	20.5103
AGCCUUUCUCAUUUUCUCCAUCAGGGUC	chr9:134067478-134067725(+)$1	247	176	204	20.3664
UGCUCGUUAGUGUAUUUCUUGAGCUGUU	chr1:33145873-33146104(+)$1	231	4	32	17.1904
uuuuuguuuuuuuuuuuuugaggugaag	chr21:45179969-45180232(+)$1	263	87	115	20.2479
UUGUUUAAAAUUUUUUCCCCAAUCUUGC	chr14:81686746-81687065(-)$1	319	71	99	18.6119
uuuuuuuuuuuuuuuuuuuaaagacggg	chr3:10142982-10143239(+)$1	257	85	113	20.4674
ugcccagacuagccuugaacucuugggc	chr1:167758026-167758246(+)$1	220	126	154	17.1068
cccagguuuaagcgauucuccugccuca	chr1:6582805-6583048(-)$1	243	177	205	18.5737
CCCUUUCACCAUUUCCCCUCGGAGGCGC	chr4:77996929-77997146(-)$1	217	120	148	20.7635
CAAUGGGACUUAAACCUUACCUCUUGUG	chr11:65764639-65764905(-)$1	266	43	71	21.0288
AGGUCACAUUUGUAUUUUUUGACCUGAC	chr11:3012378-3012646(-)$1	268	37	65	19.5037
GAAUACGUAAAUUCAAACUUGUACAUGC	chr17:74731367-74731584(-)$1	217	145	173	20.6013
uuuuuuuuuuuuuuuuuuuugagacugu	chr17:30701149-30701411(+)$1	262	87	115	20.4876
AGGGAUGCCCUACUCUCUCGCAGCUCUU	chr22:38879928-38880145(-)$1	217	92	120	17.7415
uguuuuuuuuuuuuuuuuuuuuuugaga	chr12:133348986-133349236(-)$1	250	83	111	18.7417
UGUACCCCUAUCCUUCCAAGCACUUCUG	chr1:113212896-113213163(+)$1	267	234	262	17.8845
GACCCUUUCCCCUAGCCUAGGGUCCCAU	chrX:48770824-48771115(-)$1	291	154	182	16.5727
UGGAAAUGGuuuuuuuuuuuuuuuuucu	chr3:152881388-152881617(+)$1	229	27	55	14.7349
CCAACAUUUUUCUUAUGGCUGUUGAAAA	chr6:109688912-109689217(-)$1	305	40	68	20.3579
UACCCUGCCCCUCUUUUUCGGUUUGUUU	chr22:20114584-20114815(+)$1	231	46	74	18.6338
UUUUUUUUUUUCAGACUGACCGCGGGGC	chr5:133707144-133707375(+)$1	231	103	131	20.6478
AGGAGAGAGAUGACAGUGGUCCUCCUCU	chr19:5205790-5206106(-)$1	316	239	267	17.6176
uaaaauaauacccuaucaucugcuccua	chr6:33269245-33269498(-)$1	253	27	55	20.7776
UAUGGCGUAAGUACAGAGAAGCCAUCAC	chr2:85771986-85772225(+)$1	239	24	52	20.9569
ugcccagacuagccuugaacucuugggc	chr1:167758046-167758271(+)$1	225	106	134	17.1068
uccugccucagcuucccaaguagcgggg	chr19:2233577-2233852(-)$1	275	205	233	21.6926
ggcuaauuuuuuuguauuuuuaguagag	chr11:27516821-27517126(-)$1	305	255	283	21.7529
GACAGAUAACUUUUAAUUUUUCAAAUUU	chr20:61827313-61827582(-)$1	269	52	80	21.3180
AUACUGAUUUUUAUUCCUUGCGUUAUCA	chr21:34896523-34896795(-)$1	272	223	251	20.4798
UGUACAUAUUUCUCUACUUUUUGUAUCA	chr2:113420842-113421059(+)$1	217	12	40	17.4498
UGGCUUUUUUUUUUCUUUUGUUUUGGUU	chr22:21304584-21304811(+)$1	227	28	56	18.3148
AAGUAGAAAUAUUAGUGUUACGGAAGUG	chr15:41572623-41572896(+)$1	273	33	61	17.9480
UUAAAUUCUACUUCUAuuuuuuuuuuuu	chr5:36183280-36183537(+)$1	257	72	100	20.3495
AGGUCACAUUUGUAUUUUUUGACCUGAC	chr11:3012446-3012698(-)$1	252	89	117	20.3658
GCUCCUAAUACAUGUCCAAAGCAUUGAC	chr15:41573168-41573454(+)$1	286	245	273	20.1836
UUUGUUUUGUUUUUGUUCUGCAUUAAGG	chr3:133307584-133307812(+)$1	228	97	125	21.4288
caggugauccucccaucuccgccucccg	chr10:104209487-104209737(+)$1	250	17	45	21.9314
AAUUUUCUACCACAUUCCCUUAAGCUAA	chr3:160154423-160154692(-)$1	269	27	55	20.6773
uuuuuuuuuuuuuuuuuuuuuuGCACCA	chr7:100277606-100277895(-)$1	289	85	113	20.3239
CGGAGAGCACCUGAACCCCCUUUCCUUU	chr11:47489675-47489925(-)$1	250	75	103	16.9715
UGUGCCUUUCAUUACUUUGUUACAGAAA	chr12:76441726-76441980(-)$1	254	173	201	21.1941
uaguccagauuuuuacagaggauacauc	chr7:148700599-148700861(-)$1	262	163	191	21.5466
cagggucuuucucuguugcccaggcuag	chr7:56147870-56148185(+)$1	315	110	138	16.3105
AACCAGUUGAUUUAAAUAUCUGGUCUCU	chr16:3777269-3777583(-)$1	314	31	59	21.0945
CAUUCACCUACCCUguuuugguguuugg	chr6:24719240-24719490(-)$1	250	37	65	17.6868
AUUCCAAGCACUUGUGCAACUUGGAAAA	chr8:26268722-26268978(+)$1	256	225	253	14.9518
gaguuucaccacguuaccuaggcuuguc	chr2:188330017-188330276(-)$1	259	217	245	22.2117

#DB
(((((((...........)))).))).)	chr11:62360765-62361019(-)$1	1	173	201	15.8313
..((((.............)))).((((	chr7:44618298-44618566(-)$1	1	174	202	18.5737
(((................)))))))).	chr14:102231827-102232080(+)$1	1	52	80	18.3025
(((((................)))))))	chr17:56081909-56082161(-)$1	1	14	42	21.5590
...................)))))))))	chr19:15347875-15348146(-)$1	1	159	187	20.7635
.....................)))))))	chr1:32636744-32636976(+)$1	1	69	97	20.9566
((((((..............))))))((	chr9:123522757-123523023(-)$1	1	99	127	20.6678
.((((((............))))))..)	chrX:150574974-150575236(+)$1	1	176	204	19.7234
...................)))))))))	chrX:73808166-73808453(-)$1	1	48	76	20.7635
.....................)))))))	chr1:21070008-21070230(-)$1	1	50	78	20.9566
(((.((.............)).))))))	chr1:204522196-204522455(+)$1	1	96	124	20.5103
.(((((................))))).	chr9:134067478-134067725(+)$1	1	176	204	20.3664
.(((((.............)))))....	chr1:33145873-33146104(+)$1	1	4	32	17.1904
...................)).).))))	chr21:45179969-45180232(+)$1	1	87	115	20.2479
...................)))))))).	chr14:81686746-81687065(-)$1	1	71	99	18.6119
...................))))).)))	chr3:10142982-10143239(+)$1	1	85	113	20.4674
.((((((...............))))))	chr1:167758026-167758246(+)$1	1	126	154	17.1068
..((((.............)))).((((	chr1:6582805-6583048(-)$1	1	177	205	18.5737
...................)))))))))	chr4:77996929-77997146(-)$1	1	120	148	20.7635
(((.(((............))).))).)	chr11:65764639-65764905(-)$1	1	43	71	21.0288
((((((.............))))))(((	chr11:3012378-3012646(-)$1	1	37	65	19.5037
.(.((((............))))..).)	chr17:74731367-74731584(-)$1	1	145	173	20.6013
....................)))).)))	chr17:30701149-30701411(+)$1	1	87	115	20.4876
((((.(((...........))).)))))	chr22:38879928-38880145(-)$1	1	92	120	17.7415
((((((..................))))	chr12:133348986-133349236(-)$1	1	83	111	18.7417
)(((((.....................)	chr1:113212896-113213163(+)$1	1	234	262	17.8845
((((((............)))))))).)	chrX:48770824-48771115(-)$1	1	154	182	16.5727
((((((.................)))))	chr3:152881388-152881617(+)$1	1	27	55	14.7349
.(((((.............))))).(((	chr6:109688912-109689217(-)$1	1	40	68	20.3579
.(((...............)))..))))	chr22:20114584-20114815(+)$1	1	46	74	18.6338
...................))))).)))	chr5:133707144-133707375(+)$1	1	103	131	20.6478
(((((.((...........)))))))))	chr19:5205790-5206106(-)$1	1	239	267	17.6176
.....................))).)))	chr6:33269245-33269498(-)$1	1	27	55	20.7776
((((((..............))))).))	chr2:85771986-85772225(+)$1	1	24	52	20.9569
.((((((...............))))))	chr1:167758046-167758271(+)$1	1	106	134	17.1068
((((((.............)))).))))	chr19:2233577-2233852(-)$1	1	205	233	21.6926
.(((((.............))))).)))	chr11:27516821-27517126(-)$1	1	255	283	21.7529
((..((..............))...)))	chr20:61827313-61827582(-)$1	1	52	80	21.3180
(((.((..............)).)))))	chr21:34896523-34896795(-)$1	1	223	251	20.4798
((((((...............)))).))	chr2:113420842-113421059(+)$1	1	12	40	17.4498
.((((...................))))	chr22:21304584-21304811(+)$1	1	28	56	18.3148
..((((...........)))))))))))	chr15:41572623-41572896(+)$1	1	33	61	17.9480
...................))))))).)	chr5:36183280-36183537(+)$1	1	72	100	20.3495
((((((.............))))))..)	chr11:3012446-3012698(-)$1	1	89	117	20.3658
(((................))))..)))	chr15:41573168-41573454(+)$1	1	245	273	20.1836
..(((..............)))..))))	chr3:133307584-133307812(+)$1	1	97	125	21.4288
.(((((.............)))))))))	chr10:104209487-104209737(+)$1	1	17	45	21.9314
...................)))))...)	chr3:160154423-160154692(-)$1	1	27	55	20.6773
......................))))))	chr7:100277606-100277895(-)$1	1	85	113	20.3239
)((((((............))))))...	chr11:47489675-47489925(-)$1	1	75	103	16.9715
((((.(............).))))).))	chr12:76441726-76441980(-)$1	1	173	201	21.1941
..((((.............))))....)	chr7:148700599-148700861(-)$1	1	163	191	21.5466
(.((((...........))))(((((((	chr7:56147870-56148185(+)$1	1	110	138	16.3105
.(((((.............)))))(((.	chr16:3777269-3777583(-)$1	1	31	59	21.0945
((..((((...........))))..)))	chr6:24719240-24719490(-)$1	1	37	65	17.6868
.(((((((...........)))))))..	chr8:26268722-26268978(+)$1	1	225	253	14.9518
((((((.............)))))))))	chr2:188330017-188330276(-)$1	1	217	245	22.2117

#PSSM
^ : 0.24	: : 0.10	! : 0.10	c : 0.08	f : 0.07	h : 0.05	= : 0.05	i : 0.05	e : 0.05	" : 0.05	[ : 0.03	d : 0.03	g : 0.01	# : 0.01	H : 0.01	
^ : 0.24	e : 0.17	f : 0.14	c : 0.08	: : 0.05	= : 0.05	i : 0.05	d : 0.05	h : 0.03	g : 0.03	! : 0.03	a : 0.01	# : 0.01	
^ : 0.24	e : 0.17	d : 0.15	f : 0.14	c : 0.08	= : 0.05	h : 0.03	g : 0.03	! : 0.03	[ : 0.01	i : 0.01	
^ : 0.24	d : 0.17	e : 0.15	f : 0.14	= : 0.05	[ : 0.05	y : 0.03	c : 0.03	g : 0.03	! : 0.03	i : 0.01	h : 0.01	
^ : 0.24	d : 0.19	e : 0.14	f : 0.12	= : 0.05	b : 0.05	y : 0.03	c : 0.03	[ : 0.03	g : 0.03	i : 0.01	h : 0.01	x : 0.01	
^ : 0.26	d : 0.17	e : 0.14	f : 0.12	y : 0.05	b : 0.05	c : 0.03	= : 0.03	i : 0.01	h : 0.01	x : 0.01	[ : 0.01	w : 0.01	a : 0.01	g : 0.01	
^ : 0.29	v : 0.22	w : 0.08	y : 0.07	f : 0.07	d : 0.05	c : 0.03	u : 0.03	x : 0.03	t : 0.03	z : 0.01	b : 0.01	g : 0.01	
^ : 0.29	v : 0.22	u : 0.10	w : 0.08	y : 0.07	x : 0.07	t : 0.05	c : 0.01	z : 0.01	b : 0.01	d : 0.01	g : 0.01	
^ : 0.29	v : 0.22	t : 0.12	u : 0.10	w : 0.08	y : 0.07	x : 0.07	z : 0.01	
^ : 0.29	v : 0.22	t : 0.12	u : 0.10	w : 0.08	y : 0.07	x : 0.07	z : 0.01	
^ : 0.29	v : 0.22	t : 0.12	u : 0.10	w : 0.08	y : 0.07	x : 0.07	z : 0.01	
^ : 0.29	v : 0.22	t : 0.12	u : 0.10	w : 0.08	y : 0.07	x : 0.07	z : 0.01	
^ : 0.29	v : 0.22	t : 0.12	u : 0.10	w : 0.08	y : 0.07	x : 0.07	z : 0.01	
^ : 0.29	v : 0.22	t : 0.12	u : 0.10	w : 0.08	y : 0.07	x : 0.07	z : 0.01	
^ : 0.29	v : 0.22	t : 0.12	u : 0.10	w : 0.08	y : 0.07	x : 0.07	z : 0.01	
^ : 0.29	v : 0.22	t : 0.12	u : 0.10	w : 0.08	y : 0.07	x : 0.07	z : 0.01	
^ : 0.29	v : 0.22	t : 0.12	u : 0.10	w : 0.08	y : 0.07	x : 0.07	z : 0.01	
^ : 0.29	v : 0.22	u : 0.10	t : 0.08	w : 0.08	y : 0.07	x : 0.07	d : 0.03	z : 0.01	
^ : 0.29	v : 0.22	w : 0.08	y : 0.07	u : 0.07	x : 0.07	t : 0.07	d : 0.05	h : 0.01	z : 0.01	a : 0.01	
d : 0.17	^ : 0.14	e : 0.14	= : 0.07	w : 0.07	f : 0.07	c : 0.07	h : 0.05	b : 0.05	x : 0.05	y : 0.03	g : 0.03	z : 0.01	] : 0.01	
d : 0.19	e : 0.17	^ : 0.12	f : 0.08	b : 0.08	= : 0.07	c : 0.07	h : 0.05	x : 0.05	y : 0.03	g : 0.03	z : 0.01	
d : 0.17	e : 0.17	= : 0.10	g : 0.10	f : 0.08	c : 0.08	^ : 0.07	h : 0.05	] : 0.03	x : 0.03	b : 0.03	y : 0.01	z : 0.01	
e : 0.19	d : 0.15	f : 0.14	= : 0.10	g : 0.10	] : 0.07	h : 0.05	^ : 0.05	c : 0.03	2 : 0.03	a : 0.01	z : 0.01	3 : 0.01	
e : 0.21	f : 0.15	= : 0.12	g : 0.10	2 : 0.08	c : 0.07	h : 0.05	^ : 0.05	: : 0.03	] : 0.03	d : 0.03	3 : 0.01	4 : 0.01	
f : 0.19	e : 0.12	= : 0.12	g : 0.12	] : 0.08	c : 0.07	h : 0.05	2 : 0.05	: : 0.03	i : 0.03	3 : 0.03	d : 0.03	^ : 0.01	4 : 0.01	
f : 0.15	= : 0.14	c : 0.12	g : 0.12	e : 0.08	h : 0.05	d : 0.05	i : 0.05	] : 0.05	2 : 0.03	: : 0.03	F : 0.01	a : 0.01	^ : 0.01	3 : 0.01	4 : 0.01	
= : 0.14	f : 0.14	c : 0.12	e : 0.08	g : 0.08	: : 0.07	d : 0.07	] : 0.07	h : 0.05	i : 0.05	2 : 0.03	F : 0.01	^ : 0.01	3 : 0.01	4 : 0.01	
c : 0.15	f : 0.15	= : 0.14	g : 0.10	e : 0.08	d : 0.08	: : 0.05	i : 0.05	] : 0.03	h : 0.03	E : 0.01	a : 0.01	2 : 0.01	F : 0.01	[ : 0.01	

#score	1111.5181299719468
#seq	57
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_transcript_m3_run1.txt

#BEAR
ffffffeeeee!!cccmmmmccc]eeeee6	chr5:145523756-145524013(-)$1	257	183	213	12.6944
dddd[ggggggg[cccmmmmccc]gggggg	chr2:55462462-55462763(+)$1	301	124	154	14.9296
gggggg####ccccccmmmmccc]cccggg	chr15:91478724-91479036(+)$1	312	275	305	14.1920
d[bbcccbb####cccmmmmccc333bb]c	chr14:102550989-102551204(-)$1	215	103	133	13.9427
fffff!!eeeee[cccmmmmccc]eeeee3	chr11:65826943-65827162(+)$1	219	149	179	13.7377
eeee####dddd[cccmmmmccc]dddd]e	chr1:245019105-245019327(-)$1	222	39	69	13.7212
gggggg"""gggggggmmmmggggggg333	chr10:127516026-127516308(+)$1	282	11	41	12.5210
dddd"""dddd!!cccmmmmccc22ddddd	chr22:36919841-36920102(-)$1	261	160	190	14.7488
e:bb[ccceeeeecccmmmmccc]eeeee3	chr11:8704647-8704914(+)$1	267	166	196	12.1367
$bb!!ggggggg!!bbmmmmbb22gggggg	chr19:8056451-8056742(-)$1	291	154	184	11.8268
=====!!eeeeeddddmmmmdddd333eee	chr5:98234291-98234560(-)$1	269	43	73	12.4705
a[ggggggg####cccmmmmcccggggggg	chr19:4430490-4430735(+)$1	245	78	108	14.3182
dddd!!ccc[ccccccmmmmccc22ccc22	chr11:63763910-63764187(+)$1	277	116	146	15.0326
gg!!a[ccccccddddmmmmdddd333ccc	chr11:57097465-57097713(-)$1	248	153	183	13.0697
eeeeeggggggg[cccmmmmccc22ggggg	chr4:83292584-83292838(-)$1	254	39	69	14.9093
fffff####dddd[ccclllccc22dddd3	chr14:102431131-102431365(+)$1	234	66	96	10.6339
dd[ccc"""gggggggmmmmggggggg]cc	chr2:96968805-96969063(-)$1	258	63	93	12.2172
ee"""ffffff!!cccmmmmccc22fffff	chr6:44218188-44218394(+)$1	206	115	145	15.0036
fff:============mmmm==========	chr12:80187541-80187809(-)$1	268	183	213	11.7865
[ccc!!ffffff[cccmmmmcccffffffc	chrX:70517614-70517837(+)$1	223	137	167	13.8108
[ddddffffff[ddddmmmmdddd333fff	chr17:27011591-27011843(+)$1	252	107	137	11.8594
dddd"""eeeee!!ccclllccc22eeeee	chr1:229462496-229462849(-)$1	353	179	209	12.0101
dddd[ccc####ddddmmmmdddd333ccc	chr14:24606629-24606874(+)$1	245	143	173	12.7891
dddd####bb"""cccmmmmccc4444bb4	chr5:71491862-71492217(+)$1	355	25	55	14.4756
d]cccddddddddcccmmmmccc]dddd22	chr14:102498508-102498726(+)$1	218	149	179	11.6871
hh[ccca[ccc!!cccmmmmccc333ccc2	chrX:153627743-153628032(+)$1	289	170	200	15.5254
ee"""eeeee"""cccmmmmccc333eeee	chr2:101622423-101622634(+)$1	211	160	190	15.0283
dddd[ggggggg[cccmmmmcccggggggg	chr22:21213274-21213629(+)$1	355	250	280	14.5346
[cccbb[ccc"""cccmmmmccc22ccc]b	chr10:61665969-61666217(-)$1	248	70	100	14.8373
dd"""ccc[ccc[bbmmmmbbccc333ccc	chrM:1415-1620(+)$1	205	49	79	11.6048
boooooobbccc[cccmmmmccc]cccfff	chr16:85704524-85704803(+)$1	279	132	162	12.0386
!ffffff"""bb[cccmmmmcccbb333ff	chr12:118639007-118639326(-)$1	319	260	290	12.5003
Gdddd[dddda!!cccmmmmccc22a]ddd	chr6:76602144-76602453(+)$1	309	95	125	13.6449
:ccc"""ccc!!ddddmmmmdddd]ccc]c	chr17:27413441-27413695(-)$1	254	103	133	12.3817
gggg[a[dddd!!cccmmmmccc333dddd	chr15:34729495-34729762(-)$1	267	217	247	14.9569
ee"""ffffff!!cccmmmmccc22fffff	chr6:44218133-44218348(+)$1	215	170	200	15.0036
::dddd!!ccc!!cccmmmmccc22ccc22	chr2:232325103-232325311(-)$1	208	174	204	13.3123
d!!bb[ccc####cccmmmmcccccc]bb]	chr7:72858312-72858559(-)$1	247	173	203	13.5811
eeeee[ffffff!!ccclllccc22fffff	chr7:5567407-5567621(-)$1	214	131	161	11.3551
[ccc!!ffffff[cccmmmmcccffffffc	chrX:70517658-70517888(+)$1	230	93	123	13.8108
ggg"""ccc!!a[bbmmmmbb]a333cccg	chr15:91523492-91523720(-)$1	228	21	51	11.8308
bbiiiiiiiii[ddddmmmmddddiiiiii	chr10:73588682-73588931(-)$1	249	54	84	11.8141
eeeee[iiiiiiiiiammmma]iiiiiiii	chr6:160200982-160201219(-)$1	237	126	156	11.9853
bb:::ggggggg[cccmmmmccc]gggggg	chr2:105959270-105959565(+)$1	295	69	99	11.6885
"dddd!!a[ccc[cccmmmmccc333ccc]	chr6:35438256-35438498(+)$1	242	116	146	15.8024
bbiiiiiiiii[ddddmmmmddddiiiiii	chrX:53426509-53426753(-)$1	244	134	164	11.8141
ccc[a[ccc[bb!!bbmmmmbb]bb]ccca	chr19:11118515-11118780(+)$1	265	174	204	10.8130
:bbbb!!eeeee[cccmmmmccc]eeeee3	chr10:17277095-17277449(+)$1	354	94	124	12.6666
======!!ccc[ddddmmmmdddd]ccc33	chr1:38167372-38167590(+)$1	218	139	169	13.1404
cc[a!!ffffff[cccmmmmccc22fffff	chr6:90363797-90364126(-)$1	329	11	41	14.9764
b!!ffffff[ccccccmmmmccc]ccc333	chr1:53701167-53701407(-)$1	240	145	175	13.6523
!!ccc"""dddd[cccmmmmcccdddd]cc	chr1:226576285-226576544(-)$1	259	11	41	13.5183
dd####ccc[a!!cccmmmmccc22a]ccc	chr1:27269389-27269623(+)$1	234	3	33	16.0354

#otherMatches

#Seq PSSM
GGUAAACAAACUUGAAAUUUUUCUGUUUGG	chr5:145523756-145524013(-)$1	257	183	213	12.6944
UCGCCUUCGUCGAGAGUGCCCUUCUGAUGA	chr2:55462462-55462763(+)$1	301	124	154	14.9296
CUUGGGCCCCAGCUGGACAUUCACGCUCCC	chr15:91478724-91479036(+)$1	312	275	305	14.1920
AAUCCCGACGAUAUUACUAAUGAGGAGUAC	chr14:102550989-102551204(-)$1	215	103	133	13.9427
CCUGGAGCCCAGCUGGGAGACCACCUGGGG	chr11:65826943-65827162(+)$1	219	149	179	13.7377
UGGCAAGAACCAGUUUAACAGAGGUGGUGG	chr1:245019105-245019327(-)$1	222	39	69	13.7212
AUUUCAUUGUUUGUAUUUGAAUAUAGGAUU	chr10:127516026-127516308(+)$1	282	11	41	12.5210
GGUGAGAUUUUCAUCCUGCUGGAACAAGAC	chr22:36919841-36920102(-)$1	261	160	190	14.7488
UAAGUGCCGGCUUCCCCUCGGGGUGGGCCU	chr11:8704647-8704914(+)$1	267	166	196	12.1367
AGCCUGUUCAGCAGCAUUGGUGAAGUUGAA	chr19:8056451-8056742(-)$1	291	154	184	11.8268
UUAUUUAUGGGAGAUUUUUAAGUCUAUUCC	chr5:98234291-98234560(-)$1	269	43	73	12.4705
GGAUGAAGAUGAGGACGAUGGUUUCUUUGU	chr19:4430490-4430735(+)$1	245	78	108	14.3182
UCCGCAAGACCAGGCCUGACGGCAACUGUU	chr11:63763910-63764187(+)$1	277	116	146	15.0326
UUUGGUGGUACCUUGUGGGGAUAAGAUGGU	chr11:57097465-57097713(-)$1	248	153	183	13.0697
ACAGUGUCAAAAACUAAAACUAGAAUUUUG	chr4:83292584-83292838(-)$1	254	39	69	14.9093
AGGAGAAGAGCGCCCUGGAGCAGAUGCGCA	chr14:102431131-102431365(+)$1	234	66	96	10.6339
GCAUUGAUGAGAUGGUGGGCAUCAUCUACA	chr2:96968805-96969063(-)$1	258	63	93	12.2172
ACUAAUGACUGGGAAGACCACUUGGCAGUC	chr6:44218188-44218394(+)$1	206	115	145	15.0036
UUUGUAUUGAGAAGUAUUCAUAUUUUUUAA	chr12:80187541-80187809(-)$1	268	183	213	11.7865
ACAGCAGGAAGGAUUCAAGGGAACCUUCCC	chrX:70517614-70517837(+)$1	223	137	167	13.8108
AGGGAAGGGCAUUCGAGUCCUCGGCAUUGC	chr17:27011591-27011843(+)$1	252	107	137	11.8594
CCUCGACAGCAACCAAGUGCCUUAUUUGCU	chr1:229462496-229462849(-)$1	353	179	209	12.0101
AGGUACUUGAAACCACAAUGGUGGGAAGAG	chr14:24606629-24606874(+)$1	245	143	173	12.7891
GGGCGAAUGUGAACAGACACCUGAGGAGCU	chr5:71491862-71492217(+)$1	355	25	55	14.4756
CAACCCUCCUGCUGCUGUGAAGCUGGCGCU	chr14:102498508-102498726(+)$1	218	149	179	11.6871
UAUGAGCAGCUGUCCUCUGAAGGUAAGGCA	chrX:153627743-153628032(+)$1	289	170	200	15.5254
UACCUCUUAAAAUGUGAAUUCAUCUGUUAA	chr2:101622423-101622634(+)$1	211	160	190	15.0283
CAGUACUUGCGGCAGGAGGUCCUCCGCAGG	chr22:21213274-21213629(+)$1	355	250	280	14.5346
GGCGGGGGGCAACAGCAGCAGCUCGGCCGC	chr10:61665969-61666217(-)$1	248	70	100	14.8373
GGCCCUGAAGCGCGUACACACCGCCCGUCA	chrM:1415-1620(+)$1	205	49	79	11.6048
CACUACAGCCUCAGCCUGACGGCAGAGCAG	chr16:85704524-85704803(+)$1	279	132	162	12.0386
augcccacuaugugaaaaaguucuagacug	chr12:118639007-118639326(-)$1	319	260	290	12.5003
UUGUCAGGCUGAAGUGGAGGCACAGCUGGC	chr6:76602144-76602453(+)$1	309	95	125	13.6449
AUGGAUCUAGAAAGCCUGGAGGCUGCUAAC	chr17:27413441-27413695(-)$1	254	103	133	12.3817
gcccgcggcgccgcggggacccggacgcgu	chr15:34729495-34729762(-)$1	267	217	247	14.9569
ACUAAUGACUGGGAAGACCACUUGGCAGUC	chr6:44218133-44218348(+)$1	215	170	200	15.0036
AUAACAAAGGGACUUAAUACUGAAACCUGA	chr2:232325103-232325311(-)$1	208	174	204	13.3123
UAAGAAGCCACACUCUACCAGGAGGUCUCA	chr7:72858312-72858559(-)$1	247	173	203	13.5811
GUGGAUCGGCGGCUCCAUCCUGGCCUCGCU	chr7:5567407-5567621(-)$1	214	131	161	11.3551
ACAGCAGGAAGGAUUCAAGGGAACCUUCCC	chrX:70517658-70517888(+)$1	230	93	123	13.8108
CUUAAAAGGGGGGGAUCUUUUGCAAACCUG	chr15:91523492-91523720(-)$1	228	21	51	11.8308
CUGGGGAGAGGAUUUUCAGCAGGACUUCUU	chr10:73588682-73588931(-)$1	249	54	84	11.8141
UUAUCUUACGUGGGGCAAAUGAUUUCAUGU	chr6:160200982-160201219(-)$1	237	126	156	11.9853
UCAUCGUAUUUGAUGGAAGUUCAACAAGUA	chr2:105959270-105959565(+)$1	295	69	99	11.6885
UAGCUGUUGGUCACGUGAAGAUGACAGACG	chr6:35438256-35438498(+)$1	242	116	146	15.8024
CAUUCAGUUGGAUUUUGAAAAGAACCAACU	chrX:53426509-53426753(-)$1	244	134	164	11.8141
ACAUCAUUGAGUAAGGGGUCCCGACACAGG	chr19:11118515-11118780(+)$1	265	174	204	10.8130
UGCGUGAAAUGGAAGAGAACUUUGCCGUUG	chr10:17277095-17277449(+)$1	354	94	124	12.6666
UGGUGUUUUGGGUUUUAUUGGAGAGCCAUA	chr1:38167372-38167590(+)$1	218	139	169	13.1404
AUUAUUAUUUUGUUCUGCAAAGACCUAGGA	chr6:90363797-90364126(-)$1	329	11	41	14.9764
UGAUCAGAAAAGAGGUAUGAGCCUUCUGCC	chr1:53701167-53701407(-)$1	240	145	175	13.6523
UACUGCAUCACCGCAAGUCAUUGGGUGUCA	chr1:226576285-226576544(-)$1	259	11	41	13.5183
UGAAAGGGAAGGACAUGGUGGUGGACAUCC	chr1:27269389-27269623(+)$1	234	3	33	16.0354

#DB
(((((((((((..(((....))).))))).	chr5:145523756-145524013(-)$1	1	183	213	12.6944
((((.(((((((.(((....))).))))))	chr2:55462462-55462763(+)$1	1	124	154	14.9296
((((((....((((((....))).))))))	chr15:91478724-91479036(+)$1	1	275	305	14.1920
(.(((((((....(((....)))...)).)	chr14:102550989-102551204(-)$1	1	103	133	13.9427
(((((..(((((.(((....))).))))).	chr11:65826943-65827162(+)$1	1	149	179	13.7377
((((....((((.(((....))).)))).)	chr1:245019105-245019327(-)$1	1	39	69	13.7212
((((((...(((((((....)))))))...	chr10:127516026-127516308(+)$1	1	11	41	12.5210
((((...((((..(((....)))..)))))	chr22:36919841-36920102(-)$1	1	160	190	14.7488
).((.(((((((((((....))).))))).	chr11:8704647-8704914(+)$1	1	166	196	12.1367
.((..(((((((..((....))..))))))	chr19:8056451-8056742(-)$1	1	154	184	11.8268
(((((..(((((((((....))))...)))	chr5:98234291-98234560(-)$1	1	43	73	12.4705
(.(((((((....(((....))))))))))	chr19:4430490-4430735(+)$1	1	78	108	14.3182
((((..(((.((((((....)))..)))..	chr11:63763910-63764187(+)$1	1	116	146	15.0326
((..(.((((((((((....))))...)))	chr11:57097465-57097713(-)$1	1	153	183	13.0697
((((((((((((.(((....)))..)))))	chr4:83292584-83292838(-)$1	1	39	69	14.9093
(((((....((((.(((...)))..)))).	chr14:102431131-102431365(+)$1	1	66	96	10.6339
((.(((...(((((((....))))))).))	chr2:96968805-96969063(-)$1	1	63	93	12.2172
((...((((((..(((....)))..)))))	chr6:44218188-44218394(+)$1	1	115	145	15.0036
))).((((((((((((....))))))))))	chr12:80187541-80187809(-)$1	1	183	213	11.7865
.(((..((((((.(((....))))))))))	chrX:70517614-70517837(+)$1	1	137	167	13.8108
.((((((((((.((((....))))...)))	chr17:27011591-27011843(+)$1	1	107	137	11.8594
((((...(((((..(((...)))..)))))	chr1:229462496-229462849(-)$1	1	179	209	12.0101
((((.(((....((((....))))...)))	chr14:24606629-24606874(+)$1	1	143	173	12.7891
((((....((...(((....)))....)).	chr5:71491862-71492217(+)$1	1	25	55	14.4756
).)))(((((((((((....))).))))..	chr14:102498508-102498726(+)$1	1	149	179	11.6871
((.((((.(((..(((....)))...))).	chrX:153627743-153628032(+)$1	1	170	200	15.5254
((...(((((...(((....)))...))))	chr2:101622423-101622634(+)$1	1	160	190	15.0283
((((.(((((((.(((....))))))))))	chr22:21213274-21213629(+)$1	1	250	280	14.5346
.(((((.(((...(((....)))..))).)	chr10:61665969-61666217(-)$1	1	70	100	14.8373
((...(((.(((.((....)))))...)))	chrM:1415-1620(+)$1	1	49	79	11.6048
(......))(((.(((....))).)))(((	chr16:85704524-85704803(+)$1	1	132	162	12.0386
.((((((...((.(((....)))))...))	chr12:118639007-118639326(-)$1	1	260	290	12.5003
)((((.(((((..(((....)))..).)))	chr6:76602144-76602453(+)$1	1	95	125	13.6449
.(((...(((..((((....)))).))).)	chr17:27413441-27413695(-)$1	1	103	133	12.3817
((((.(.((((..(((....)))...))))	chr15:34729495-34729762(-)$1	1	217	247	14.9569
((...((((((..(((....)))..)))))	chr6:44218133-44218348(+)$1	1	170	200	15.0036
..((((..(((..(((....)))..)))..	chr2:232325103-232325311(-)$1	1	174	204	13.3123
(..((.(((....(((....)))))).)).	chr7:72858312-72858559(-)$1	1	173	203	13.5811
(((((.((((((..(((...)))..)))))	chr7:5567407-5567621(-)$1	1	131	161	11.3551
.(((..((((((.(((....))))))))))	chrX:70517658-70517888(+)$1	1	93	123	13.8108
(((...(((..(.((....)).)...))))	chr15:91523492-91523720(-)$1	1	21	51	11.8308
))(((((((((.((((....))))))))))	chr10:73588682-73588931(-)$1	1	54	84	11.8141
(((((.((((((((((....).))))))))	chr6:160200982-160201219(-)$1	1	126	156	11.9853
))...(((((((.(((....))).))))))	chr2:105959270-105959565(+)$1	1	69	99	11.6885
.((((..(.(((.(((....)))...))).	chr6:35438256-35438498(+)$1	1	116	146	15.8024
))(((((((((.((((....))))))))))	chrX:53426509-53426753(-)$1	1	134	164	11.8141
(((.(.(((.((..((....)).)).))))	chr19:11118515-11118780(+)$1	1	174	204	10.8130
.((((..(((((.(((....))).))))).	chr10:17277095-17277449(+)$1	1	94	124	12.6666
((((((..(((.((((....)))).)))..	chr1:38167372-38167590(+)$1	1	139	169	13.1404
((.(..((((((.(((....)))..)))))	chr6:90363797-90364126(-)$1	1	11	41	14.9764
(..((((((.((((((....))).)))...	chr1:53701167-53701407(-)$1	1	145	175	13.6523
..(((...((((.(((....))))))).))	chr1:226576285-226576544(-)$1	1	11	41	13.5183
((....(((.(..(((....)))..).)))	chr1:27269389-27269623(+)$1	1	3	33	16.0354

#PSSM
d : 0.24	e : 0.15	g : 0.09	b : 0.09	f : 0.07	[ : 0.07	: : 0.05	= : 0.03	! : 0.03	c : 0.03	$ : 0.01	a : 0.01	h : 0.01	G : 0.01	" : 0.01	
d : 0.24	e : 0.13	c : 0.11	f : 0.09	g : 0.09	b : 0.09	! : 0.05	[ : 0.03	: : 0.03	= : 0.03	] : 0.01	h : 0.01	o : 0.01	
d : 0.20	c : 0.13	f : 0.09	g : 0.09	b : 0.07	e : 0.07	" : 0.07	! : 0.05	[ : 0.05	= : 0.03	i : 0.03	o : 0.01	: : 0.01	# : 0.01	
d : 0.20	c : 0.15	f : 0.09	" : 0.09	g : 0.07	b : 0.07	e : 0.07	! : 0.03	= : 0.03	: : 0.03	i : 0.03	o : 0.01	[ : 0.01	a : 0.01	# : 0.01	
" : 0.15	f : 0.09	[ : 0.09	c : 0.09	! : 0.09	d : 0.07	g : 0.05	# : 0.05	= : 0.05	e : 0.05	b : 0.05	a : 0.03	i : 0.03	o : 0.01	: : 0.01	
g : 0.15	! : 0.15	f : 0.11	c : 0.11	[ : 0.11	" : 0.09	# : 0.07	= : 0.03	d : 0.03	i : 0.03	e : 0.01	b : 0.01	o : 0.01	a : 0.01	
c : 0.18	f : 0.16	g : 0.11	! : 0.11	" : 0.11	# : 0.07	i : 0.05	e : 0.03	d : 0.03	[ : 0.03	= : 0.01	a : 0.01	o : 0.01	
c : 0.20	f : 0.15	e : 0.11	g : 0.11	# : 0.07	" : 0.07	d : 0.07	i : 0.05	b : 0.03	! : 0.03	= : 0.01	[ : 0.01	a : 0.01	
c : 0.20	f : 0.15	e : 0.13	g : 0.11	d : 0.11	# : 0.05	b : 0.05	" : 0.05	i : 0.05	[ : 0.03	= : 0.01	
c : 0.16	e : 0.13	g : 0.13	d : 0.13	f : 0.13	# : 0.09	[ : 0.07	i : 0.05	= : 0.01	b : 0.01	" : 0.01	! : 0.01	
c : 0.18	g : 0.13	f : 0.13	e : 0.11	d : 0.11	# : 0.07	" : 0.05	i : 0.05	b : 0.03	a : 0.03	! : 0.03	= : 0.01	
! : 0.18	g : 0.13	c : 0.13	e : 0.09	# : 0.07	d : 0.07	f : 0.07	[ : 0.07	" : 0.05	b : 0.03	= : 0.01	a : 0.01	i : 0.01	
[ : 0.30	! : 0.24	d : 0.18	c : 0.05	# : 0.05	" : 0.05	g : 0.03	e : 0.01	= : 0.01	i : 0.01	
c : 0.64	d : 0.15	! : 0.07	g : 0.03	b : 0.03	[ : 0.01	= : 0.01	i : 0.01	
c : 0.69	d : 0.15	b : 0.07	g : 0.03	= : 0.01	i : 0.01	
c : 0.69	d : 0.15	g : 0.03	b : 0.03	m : 0.03	= : 0.01	a : 0.01	
m : 0.94	c : 0.05	
m : 0.94	l : 0.05	
m : 0.94	l : 0.05	
m : 0.90	l : 0.05	b : 0.03	
c : 0.69	d : 0.15	b : 0.07	g : 0.03	= : 0.01	a : 0.01	
c : 0.71	d : 0.15	g : 0.03	b : 0.03	] : 0.03	= : 0.01	
c : 0.71	d : 0.15	g : 0.03	2 : 0.01	= : 0.01	a : 0.01	i : 0.01	] : 0.01	
2 : 0.26	] : 0.20	d : 0.16	3 : 0.11	g : 0.07	f : 0.03	c : 0.03	b : 0.03	= : 0.01	4 : 0.01	i : 0.01	
2 : 0.24	3 : 0.20	g : 0.13	e : 0.07	c : 0.07	d : 0.05	i : 0.05	f : 0.03	b : 0.03	] : 0.03	= : 0.01	4 : 0.01	
3 : 0.22	c : 0.16	g : 0.15	f : 0.11	e : 0.09	d : 0.09	i : 0.05	a : 0.03	= : 0.01	4 : 0.01	] : 0.01	
c : 0.22	g : 0.15	e : 0.11	d : 0.11	3 : 0.11	f : 0.11	] : 0.05	i : 0.05	b : 0.01	= : 0.01	4 : 0.01	
c : 0.24	f : 0.15	e : 0.13	g : 0.13	d : 0.11	b : 0.05	3 : 0.05	i : 0.05	] : 0.03	= : 0.01	
c : 0.18	f : 0.16	e : 0.13	g : 0.13	] : 0.07	d : 0.07	3 : 0.05	2 : 0.05	i : 0.05	b : 0.03	= : 0.01	
c : 0.18	g : 0.15	3 : 0.13	f : 0.13	e : 0.07	2 : 0.07	d : 0.05	i : 0.05	] : 0.03	6 : 0.01	= : 0.01	4 : 0.01	b : 0.01	a : 0.01	

#score	704.3806033682433
#seq	53
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865SCT_PRPF8_UTR_m3_run1.txt

#BEAR
ccyyyyyyyyyyyyyyyyccceee	chr15:90348139-90348418(-)$1	279	188	212	19.3346
dd[a[bbtttttttttttbb]add	chr17:80008993-80009275(-)$1	282	53	77	22.0983
efffffftttttttttttffffff	chr19:49119843-49120103(-)$1	260	41	65	21.8905
gggggggtttttttttttgggggg	chr16:90104150-90104404(+)$1	254	157	181	22.2104
GGeeeeettttttttttteeeee:	chr13:20251727-20252007(-)$1	280	35	59	19.8624
ccc!!bbtttttttttttbb22cc	chr17:77081684-77081961(+)$1	277	222	246	21.8961
!!dddduuuuuuuuuuuudddd22	chr3:42681104-42681395(+)$1	291	227	251	21.5132
h[eeeeettttttttttteeeeeh	chr12:6675533-6675786(-)$1	253	201	225	21.8905
##dddduuuuuuuuuuuuddddee	chr2:32429628-32429911(+)$1	283	67	91	21.6279
hhhhhhwwwwwwwwwwwwwwhhhh	chr19:57351810-57352053(-)$1	243	187	211	20.5679
feeeeevvvvvvvvvvvvveeeee	chr17:38182761-38183033(-)$1	272	111	135	22.6720
=======vvvvvvvvvvvvv====	chr16:85834752-85835020(+)$1	268	219	243	22.5935
ffffffwwwwwwwwwwwwwwffff	chr19:11512973-11513249(-)$1	276	221	245	21.8349
cccddddvvvvvvvvvvvvvdddd	chr12:110765705-110765963(+)$1	258	77	101	21.7943
hhhhhhwwwwwwwwwwwwwwhhhh	chr7:150066834-150067096(+)$1	262	83	107	20.5679
fff!!bbyyyyyyyyyyyyyyyyb	chr6:31924354-31924610(-)$1	256	11	35	19.7016
ggeeeeeuuuuuuuuuuuueeeee	chr4:110638556-110638819(-)$1	263	208	232	22.9022
!a!!cccuuuuuuuuuuuuccc22	chr12:111907778-111908047(-)$1	269	184	208	22.7365
dddd[bbuuuuuuuuuuuubb]dd	chr2:38604141-38604393(-)$1	252	201	225	22.7092
dddd[bbuuuuuuuuuuuubbddd	chr20:30310227-30310517(-)$1	290	33	57	22.6608
dddd[bbuuuuuuuuuuuubbddd	chr16:28846978-28847190(+)$1	212	35	59	22.6608
ccbb[bbvvvvvvvvvvvvvbb]b	chr1:5934356-5934651(-)$1	295	163	187	21.7778
"eeeeeuuuuuuuuuuuueeeee=	chr2:37423550-37423831(+)$1	281	197	221	22.3599
ggggggwwwwwwwwwwwwwwgggg	chr5:112312550-112312819(+)$1	269	144	168	22.2424
eeeebbvvvvvvvvvvvvvbb]ee	chr16:74927447-74927686(-)$1	239	73	97	22.3587
"""ddddtttttttttttdddd22	chr7:100285947-100286258(-)$1	311	11	35	20.9131
eeeeyyyyyyyyyyyyyyyyeeee	chr1:46658430-46658700(-)$1	270	240	264	21.0992
ffffffwwwwwwwwwwwwwwffff	chr3:14206195-14206434(-)$1	239	150	174	21.8349
ffffffvvvvvvvvvvvvvfffff	chr3:9845586-9845847(+)$1	261	98	122	22.5828
fffffftttttttttttffffffd	chr2:27265244-27265565(+)$1	321	0	24	20.3833
ffffffwwwwwwwwwwwwwwffff	chr17:7214857-7215118(+)$1	261	189	213	21.8349
cccccwwwwwwwwwwwwwwccc]c	chr17:74283737-74283996(-)$1	259	148	172	21.6608
a!!cccauuuuuuuuuuuua]ccc	chr2:47397734-47398050(-)$1	316	124	148	23.3980
hhhhhhhttttttttttthhhhhh	chr5:176860971-176861249(+)$1	278	228	252	19.8458
c[bb[bbvvvvvvvvvvvvvbb]b	chr11:28131797-28132091(+)$1	294	237	261	21.8421
dddd[ayyyyyyyyyyyyyyyya]	chr9:139700787-139701060(+)$1	273	230	254	20.6975
ffffffvvvvvvvvvvvvvfffff	chr3:52443570-52443832(-)$1	262	147	171	22.5828
dd!!ccctttttttttttccc333	chr3:48506359-48506629(+)$1	270	221	245	22.2103
e[bb[bbuuuuuuuuuuuubb]bb	chr11:93465342-93465566(-)$1	224	159	183	22.1818
eeee[bbtttttttttttbbeeee	chr5:122848132-122848408(+)$1	276	2	26	22.5646
ffffffvvvvvvvvvvvvvfffff	chr22:29089891-29090154(-)$1	263	108	132	22.5828
cceeeeeuuuuuuuuuuuueeeee	chr12:120111743-120112026(+)$1	283	114	138	22.8643
ggggggwwwwwwwwwwwwwwgggg	chr14:24607288-24607509(+)$1	221	41	65	22.2424
cccyyyyyyyyyyyyyyyyccc:f	chr20:61916954-61917207(+)$1	253	146	170	19.5656
[ccc[bbtttttttttttbb]ccc	chr2:54122026-54122301(-)$1	275	57	81	22.5471
:fffffftttttttttttffffff	chr20:55926347-55926630(+)$1	283	94	118	20.9111
[eeeeeuuuuuuuuuuuueeeee]	chr20:35401923-35402198(-)$1	275	202	226	22.4703
"fffffftttttttttttffffff	chr3:53275009-53275269(-)$1	260	163	187	21.9152
a!!ddddvvvvvvvvvvvvvdddd	chr1:46153830-46154116(+)$1	286	90	114	21.8044
ffffffuuuuuuuuuuuuffffff	chr9:19126254-19126554(-)$1	300	190	214	22.2486
iiiiyyyyyyyyyyyyyyyyiiii	chr8:99608126-99608374(-)$1	248	47	71	21.1957
eeeeewwwwwwwwwwwwwweeeee	chr1:156339126-156339371(+)$1	245	70	94	21.4925
dddd[bbwwwwwwwwwwwwwwbbd	chr3:169491125-169491387(+)$1	262	20	44	20.5502
dd[dddduuuuuuuuuuuudddd]	chr6:43594518-43594776(-)$1	258	192	216	22.1271
hhhhhhhuuuuuuuuuuuuhhhhh	chr19:47672995-47673336(+)$1	341	123	147	20.9207

#otherMatches

#Seq PSSM
CCAGUUUCUGAAUUGUUaggccag	chr15:90348139-90348418(-)$1	279	188	212	19.3346
CCAGACGUUUAUCUUCACCGACGG	chr17:80008993-80009275(-)$1	282	53	77	22.0983
CUGGCCGGGAAAACAAGACGGCCG	chr19:49119843-49120103(-)$1	260	41	65	21.8905
GUUCACCAAGUUCACCAAGGUGAG	chr16:90104150-90104404(+)$1	254	157	181	22.2104
UAUUUCUAGGGUGAUAAAAGAAAA	chr13:20251727-20252007(-)$1	280	35	59	19.8624
UUCAGCGGGGAACUGGGGUGGAGG	chr17:77081684-77081961(+)$1	277	222	246	21.8961
auuuccaaauaucugaaaggaaua	chr3:42681104-42681395(+)$1	291	227	251	21.5132
GAGGGGUAGAAAGUACAGGCUCCC	chr12:6675533-6675786(-)$1	253	201	225	21.8905
AUUGCCUUGAUGACAUUUGGCACU	chr2:32429628-32429911(+)$1	283	67	91	21.6279
UGCCGCAAGCCCAAGACCCCGCGG	chr19:57351810-57352053(-)$1	243	187	211	20.5679
UCCUGGCCUUCGAGUCCAUCCAGG	chr17:38182761-38183033(-)$1	272	111	135	22.6720
AGACCUUAAUUCGGCUCUUGAGGG	chr16:85834752-85835020(+)$1	268	219	243	22.5935
CCCCACACUCCCUUACUACAGUGG	chr19:11512973-11513249(-)$1	276	221	245	21.8349
GACUGGUACACUUACAACAAACCA	chr12:110765705-110765963(+)$1	258	77	101	21.7943
AGCUGGAAAAAGCCUCAUCCCCAG	chr7:150066834-150067096(+)$1	262	83	107	20.5679
UGUCAUGGACACAGCCACAGCAAC	chr6:31924354-31924610(-)$1	256	11	35	19.7016
UUUCACAUAUAUUAUCUAUUGUGA	chr4:110638556-110638819(-)$1	263	208	232	22.9022
UUUAAGUUUCUGAAAACAUACUCU	chr12:111907778-111908047(-)$1	269	184	208	22.7365
GGAGUCCGCGGCUGGUUCAGGUCU	chr2:38604141-38604393(-)$1	252	201	225	22.7092
CCUGUGAUACAAAAGAUCUUCCGG	chr20:30310227-30310517(-)$1	290	33	57	22.6608
GCUGUGUAUGCCAUCCACCACCAG	chr16:28846978-28847190(+)$1	212	35	59	22.6608
ACGGUGGGAAAUUGAGAAUGCUUC	chr1:5934356-5934651(-)$1	295	163	187	21.7778
GGCCUCGUCACAGUUCUGGGGGCA	chr2:37423550-37423831(+)$1	281	197	221	22.3599
CCCGACCCCCUUUCGCCCCCGUCG	chr5:112312550-112312819(+)$1	269	144	168	22.2424
UCCUGCCUGUUCACAAAUCGCUGG	chr16:74927447-74927686(-)$1	239	73	97	22.3587
CCUGCCCUCCUUCUUCCCGGGCCA	chr7:100285947-100286258(-)$1	311	11	35	20.9131
CCUGGGCAAAGGUAGGAUGGCAGG	chr1:46658430-46658700(-)$1	270	240	264	21.0992
UUAUCAGUACUGUUAACUAAUGAU	chr3:14206195-14206434(-)$1	239	150	174	21.8349
GUUCCUUAAGAAUGUGAGUAGGGG	chr3:9845586-9845847(+)$1	261	98	122	22.5828
GAAUACAACAGCAUCUCGUGUUCG	chr2:27265244-27265565(+)$1	321	0	24	20.3833
CAGGCUUACUUUCUGCCCCUAGCC	chr17:7214857-7215118(+)$1	261	189	213	21.8349
CUGGCAUCACGAAUUCUCAGCCAA	chr17:74283737-74283996(-)$1	259	148	172	21.6608
CUUCCUCUUUGAUCUCUUUGUAGG	chr2:47397734-47398050(-)$1	316	124	148	23.3980
CAGACUACAGAAGGACAUUGGUUU	chr5:176860971-176861249(+)$1	278	228	252	19.8458
CCGGAGCAAAAGAAAAAUACGCCC	chr11:28131797-28132091(+)$1	294	237	261	21.8421
UGGCGCACAGCAACAUGACCAAGG	chr9:139700787-139701060(+)$1	273	230	254	20.6975
CCCCUGCGCCCUCACUCAUCAGGG	chr3:52443570-52443832(-)$1	262	147	171	22.5828
CCACUGCAGCCUGUUCCAGCACUG	chr3:48506359-48506629(+)$1	270	221	245	22.2103
AAGAUUCUCUGUUUCUAUUGAUUC	chr11:93465342-93465566(-)$1	224	159	183	22.1818
UGGCUCGCUUUCCUCCUCCGGCCG	chr5:122848132-122848408(+)$1	276	2	26	22.5646
GAAGCCUUAAGACACCCGUGGCUU	chr22:29089891-29090154(-)$1	263	108	132	22.5828
CCGAGGUACUCUUCCUCCCACCUC	chr12:120111743-120112026(+)$1	283	114	138	22.8643
AGAGCGCUGCCCCACUUCCCUGCU	chr14:24607288-24607509(+)$1	221	41	65	22.2424
GCCAGUCUCCAUAUUCCACGGCCC	chr20:61916954-61917207(+)$1	253	146	170	19.5656
CGUAUGAUAAAUAUGAACUCUUAC	chr2:54122026-54122301(-)$1	275	57	81	22.5471
UCCCGGCCGCCGCUUUCCGCCGGG	chr20:55926347-55926630(+)$1	283	94	118	20.9111
CCGCCGCACUAAUCUCUUCGGCGU	chr20:35401923-35402198(-)$1	275	202	226	22.4703
UUCCUAUUUCCCAGACAUGUGGGA	chr3:53275009-53275269(-)$1	260	163	187	21.9152
CGCUGGCAAGUCUCAAAGUCGCCA	chr1:46153830-46154116(+)$1	286	90	114	21.8044
UCUCUCCUUUUGUGUUUUGAGAGA	chr9:19126254-19126554(-)$1	300	190	214	22.2486
CCGAUUUUGUUAAAAAGUGUUUGG	chr8:99608126-99608374(-)$1	248	47	71	21.1957
GCGGACAAUGAAUUUUACUUUCGC	chr1:156339126-156339371(+)$1	245	70	94	21.4925
CGCCACCGUGGAAGGAAGGGAGGG	chr3:169491125-169491387(+)$1	262	20	44	20.5502
uucuuucuuuuuuuuuuuugagau	chr6:43594518-43594776(-)$1	258	192	216	22.1271
GAGCAGUGAGAAAGCAAAGGCUGC	chr19:47672995-47673336(+)$1	341	123	147	20.9207

#DB
((................))))))	chr15:90348139-90348418(-)$1	1	188	212	19.3346
((.(.((...........)).)))	chr17:80008993-80009275(-)$1	1	53	77	22.0983
)((((((...........))))))	chr19:49119843-49120103(-)$1	1	41	65	21.8905
(((((((...........))))))	chr16:90104150-90104404(+)$1	1	157	181	22.2104
(((((((...........))))).	chr13:20251727-20252007(-)$1	1	35	59	19.8624
(((..((...........))..))	chr17:77081684-77081961(+)$1	1	222	246	21.8961
..((((............))))..	chr3:42681104-42681395(+)$1	1	227	251	21.5132
(.(((((...........))))))	chr12:6675533-6675786(-)$1	1	201	225	21.8905
..((((............))))))	chr2:32429628-32429911(+)$1	1	67	91	21.6279
((((((..............))))	chr19:57351810-57352053(-)$1	1	187	211	20.5679
((((((.............)))))	chr17:38182761-38183033(-)$1	1	111	135	22.6720
(((((((.............))))	chr16:85834752-85835020(+)$1	1	219	243	22.5935
((((((..............))))	chr19:11512973-11513249(-)$1	1	221	245	21.8349
(((((((.............))))	chr12:110765705-110765963(+)$1	1	77	101	21.7943
((((((..............))))	chr7:150066834-150067096(+)$1	1	83	107	20.5679
(((..((................)	chr6:31924354-31924610(-)$1	1	11	35	19.7016
))(((((............)))))	chr4:110638556-110638819(-)$1	1	208	232	22.9022
.(..(((............)))..	chr12:111907778-111908047(-)$1	1	184	208	22.7365
((((.((............)).))	chr2:38604141-38604393(-)$1	1	201	225	22.7092
((((.((............)))))	chr20:30310227-30310517(-)$1	1	33	57	22.6608
((((.((............)))))	chr16:28846978-28847190(+)$1	1	35	59	22.6608
((((.((.............)).)	chr1:5934356-5934651(-)$1	1	163	187	21.7778
.(((((............))))))	chr2:37423550-37423831(+)$1	1	197	221	22.3599
((((((..............))))	chr5:112312550-112312819(+)$1	1	144	168	22.2424
((((((.............)).))	chr16:74927447-74927686(-)$1	1	73	97	22.3587
...((((...........))))..	chr7:100285947-100286258(-)$1	1	11	35	20.9131
((((................))))	chr1:46658430-46658700(-)$1	1	240	264	21.0992
((((((..............))))	chr3:14206195-14206434(-)$1	1	150	174	21.8349
((((((.............)))))	chr3:9845586-9845847(+)$1	1	98	122	22.5828
((((((...........))))))(	chr2:27265244-27265565(+)$1	1	0	24	20.3833
((((((..............))))	chr17:7214857-7215118(+)$1	1	189	213	21.8349
(((((..............))).)	chr17:74283737-74283996(-)$1	1	148	172	21.6608
(..((((............).)))	chr2:47397734-47398050(-)$1	1	124	148	23.3980
(((((((...........))))))	chr5:176860971-176861249(+)$1	1	228	252	19.8458
(.((.((.............)).)	chr11:28131797-28132091(+)$1	1	237	261	21.8421
((((.(................).	chr9:139700787-139701060(+)$1	1	230	254	20.6975
((((((.............)))))	chr3:52443570-52443832(-)$1	1	147	171	22.5828
((..(((...........)))...	chr3:48506359-48506629(+)$1	1	221	245	22.2103
(.((.((............)).))	chr11:93465342-93465566(-)$1	1	159	183	22.1818
((((.((...........))))))	chr5:122848132-122848408(+)$1	1	2	26	22.5646
((((((.............)))))	chr22:29089891-29090154(-)$1	1	108	132	22.5828
))(((((............)))))	chr12:120111743-120112026(+)$1	1	114	138	22.8643
((((((..............))))	chr14:24607288-24607509(+)$1	1	41	65	22.2424
(((................))).(	chr20:61916954-61917207(+)$1	1	146	170	19.5656
.(((.((...........)).)))	chr2:54122026-54122301(-)$1	1	57	81	22.5471
.((((((...........))))))	chr20:55926347-55926630(+)$1	1	94	118	20.9111
.(((((............))))).	chr20:35401923-35402198(-)$1	1	202	226	22.4703
.((((((...........))))))	chr3:53275009-53275269(-)$1	1	163	187	21.9152
(..((((.............))))	chr1:46153830-46154116(+)$1	1	90	114	21.8044
((((((............))))))	chr9:19126254-19126554(-)$1	1	190	214	22.2486
((((................))))	chr8:99608126-99608374(-)$1	1	47	71	21.1957
(((((..............)))))	chr1:156339126-156339371(+)$1	1	70	94	21.4925
((((.((..............)))	chr3:169491125-169491387(+)$1	1	20	44	20.5502
((.((((............)))).	chr6:43594518-43594776(-)$1	1	192	216	22.1271
(((((((............)))))	chr19:47672995-47673336(+)$1	1	123	147	20.9207

#PSSM
f : 0.18	c : 0.14	d : 0.14	e : 0.10	h : 0.09	g : 0.07	" : 0.05	! : 0.03	a : 0.03	[ : 0.03	G : 0.01	# : 0.01	= : 0.01	: : 0.01	i : 0.01	
f : 0.21	c : 0.14	d : 0.14	e : 0.12	g : 0.07	h : 0.07	! : 0.05	[ : 0.05	G : 0.01	# : 0.01	= : 0.01	a : 0.01	" : 0.01	i : 0.01	
f : 0.21	e : 0.20	d : 0.12	c : 0.09	h : 0.07	! : 0.07	g : 0.05	b : 0.05	[ : 0.03	y : 0.01	= : 0.01	" : 0.01	i : 0.01	
f : 0.20	e : 0.20	d : 0.20	! : 0.07	h : 0.07	g : 0.05	b : 0.05	c : 0.05	y : 0.03	a : 0.01	= : 0.01	i : 0.01	
[ : 0.20	f : 0.20	e : 0.14	d : 0.10	y : 0.07	h : 0.07	c : 0.07	g : 0.05	! : 0.03	= : 0.01	b : 0.01	
b : 0.23	f : 0.20	e : 0.12	d : 0.10	y : 0.07	h : 0.07	g : 0.05	c : 0.05	w : 0.03	= : 0.01	a : 0.01	
b : 0.21	w : 0.16	y : 0.09	u : 0.09	v : 0.09	e : 0.07	d : 0.07	f : 0.05	c : 0.03	h : 0.03	g : 0.01	= : 0.01	t : 0.01	a : 0.01	
u : 0.27	t : 0.25	w : 0.18	v : 0.18	y : 0.10	
u : 0.27	t : 0.25	w : 0.18	v : 0.18	y : 0.10	
u : 0.27	t : 0.25	w : 0.18	v : 0.18	y : 0.10	
u : 0.27	t : 0.25	w : 0.18	v : 0.18	y : 0.10	
u : 0.27	t : 0.25	w : 0.18	v : 0.18	y : 0.10	
u : 0.27	t : 0.25	w : 0.18	v : 0.18	y : 0.10	
u : 0.27	t : 0.25	w : 0.18	v : 0.18	y : 0.10	
u : 0.27	t : 0.25	w : 0.18	v : 0.18	y : 0.10	
u : 0.27	t : 0.25	w : 0.18	v : 0.18	y : 0.10	
u : 0.27	t : 0.25	w : 0.18	v : 0.18	y : 0.10	
u : 0.27	t : 0.23	w : 0.18	v : 0.18	y : 0.10	f : 0.01	
w : 0.18	v : 0.18	u : 0.18	f : 0.09	y : 0.09	b : 0.07	e : 0.07	d : 0.05	c : 0.03	g : 0.01	h : 0.01	
b : 0.16	f : 0.14	e : 0.14	w : 0.14	c : 0.09	v : 0.09	d : 0.07	y : 0.07	h : 0.03	g : 0.01	a : 0.01	
f : 0.20	e : 0.18	b : 0.12	d : 0.10	c : 0.09	h : 0.07	] : 0.05	g : 0.05	y : 0.03	2 : 0.01	= : 0.01	i : 0.01	w : 0.01	
e : 0.20	f : 0.20	d : 0.14	c : 0.09	h : 0.07	g : 0.05	] : 0.05	b : 0.05	y : 0.03	a : 0.01	2 : 0.01	= : 0.01	3 : 0.01	i : 0.01	
e : 0.23	f : 0.20	d : 0.12	h : 0.07	g : 0.05	c : 0.05	2 : 0.05	] : 0.05	b : 0.03	= : 0.01	y : 0.01	a : 0.01	3 : 0.01	: : 0.01	i : 0.01	
f : 0.20	e : 0.16	d : 0.14	h : 0.09	c : 0.07	b : 0.07	g : 0.05	2 : 0.05	] : 0.05	= : 0.03	: : 0.01	3 : 0.01	i : 0.01	

#score	1195.5369006588548
#seq	55
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_CDS_m1_run2.txt

#BEAR
!!eeeeettttttttttteeeee44	chrX:53658265-53658535(-)$1	270	174	199	23.1818
c[ddddtttttttttttdddd]ccc	chr2:228416711-228416933(+)$1	222	116	141	23.4216
[eeeeeuuuuuuuuuuuueeeeea]	chr7:75517308-75517684(+)$1	376	16	41	23.6806
:ddddvvvvvvvvvvvvvdddd:::	chr12:53849681-53849885(+)$1	204	41	66	20.5119
ggggg[attttttttttta]ggggg	chr1:28527187-28527452(-)$1	265	136	161	23.1477
e[cccvvvvvvvvvvvvvccc]eee	chr4:39757176-39757439(+)$1	263	95	120	23.6893
!!ddddtttttttttttdddd4444	chr4:151738205-151738507(-)$1	302	197	222	23.8262
!ddddvvvvvvvvvvvvvdddd22c	chr11:125472662-125472923(+)$1	261	31	56	23.9372
ccccccuuuuuuuuuuuuccc::gg	chr12:57007636-57007869(-)$1	233	107	132	22.1819
"""ccctttttttttttccc]eeee	chr11:14507832-14508141(-)$1	309	163	188	23.0180
:eeeeeuuuuuuuuuuuueeeee::	chr8:17125664-17125943(+)$1	279	81	106	21.1090
d"""ccctttttttttttccc22dd	chr21:30698617-30698989(+)$1	372	80	105	22.7299
ffffffwwwwwwwwwwwwwwfffff	chr19:3976114-3976334(-)$1	220	97	122	20.7320
ccc[bbuuuuuuuuuuuubb]ccc3	chr6:149700358-149700602(+)$1	244	191	216	22.6364
c[ddddtttttttttttdddd]ccc	chr7:104752171-104752428(+)$1	257	206	231	23.4216
dddcccvvvvvvvvvvvvvccc]dd	chr3:128356634-128356896(-)$1	262	60	85	23.6167
gggggggtttttttttttggggggg	chr6:149700011-149700298(+)$1	287	118	143	22.4721
""dddduuuuuuuuuuuudddd]ee	chr20:49509337-49509602(-)$1	265	27	52	24.6169
:eeeeevvvvvvvvvvvvveeeee:	chr1:27059070-27059326(+)$1	256	70	95	21.9965
###ccctttttttttttccc333ff	chr6:4892068-4892358(+)$1	290	52	77	23.2306
gggggggtttttttttttggggggg	chr1:93825959-93826278(+)$1	319	271	296	22.4721
cc[cccuuuuuuuuuuuuccc333c	chr16:2813691-2813978(+)$1	287	7	32	24.4883
!!ddddwwwwwwwwwwwwwwdddd]	chr12:32134483-32134748(+)$1	265	140	165	22.7271
::dddduuuuuuuuuuuuddddddd	chr13:39591541-39591781(-)$1	240	139	164	22.0871
b[cccvvvvvvvvvvvvvccc]bb]	chr7:77256288-77256549(+)$1	261	205	230	23.4162
ffffffuuuuuuuuuuuuffffffD	chr1:19501372-19501628(-)$1	256	83	108	21.3182
gggggguuuuuuuuuuuuggggggg	chr17:57721600-57721858(+)$1	258	70	95	23.6093
dddddddtttttttttttdddd]dd	chr10:70502056-70502291(+)$1	235	36	61	22.7577
:eeeeewwwwwwwwwwwwwweeeee	chr10:119044450-119044734(-)$1	284	105	130	21.0186
d!!ddddtttttttttttdddd555	chr1:150938967-150939206(-)$1	239	73	98	21.1880
ffffffuuuuuuuuuuuuffffff:	chr11:18536135-18536420(-)$1	285	8	33	21.4772
ccccccvvvvvvvvvvvvvccc]cc	chr6:43481009-43481273(-)$1	264	127	152	24.0539
======wwwwwwwwwwwwww=====	chr10:28878563-28878857(+)$1	294	41	66	22.3986
===[ccctttttttttttccc22==	chr7:86541286-86541583(-)$1	297	83	108	23.3028
""ddddyyyyyyyyyyyyyyyyddd	chr1:204379431-204379679(-)$1	248	150	175	20.4580
$$ddddyyyyyyyyyyyyyyyyddd	chr6:149699483-149699732(+)$1	249	42	67	20.0409
ggggggvvvvvvvvvvvvvgggggg	chr22:22160087-22160347(-)$1	260	7	32	23.6942
++ddddtttttttttttddddccc]	chr20:49510728-49510976(-)$1	248	175	200	22.0492
##ddddtttttttttttdddd333e	chr1:21329107-21329398(-)$1	291	92	117	23.8428
c[ddddtttttttttttdddd]ccc	chr2:228416656-228416911(+)$1	255	171	196	23.4216
$$$cccuuuuuuuuuuuuccc22ee	chr1:114504837-114505106(+)$1	269	171	196	23.5497
:ddddvvvvvvvvvvvvvddddHHH	chr12:48468005-48468238(-)$1	233	180	205	21.0394
ggg[bbuuuuuuuuuuuubb]gggg	chr11:47380085-47380337(-)$1	252	197	222	22.6945
##bbwwwwwwwwwwwwwwbb4444d	chr20:33345066-33345347(-)$1	281	161	186	20.9466
ggggggwwwwwwwwwwwwwwggggg	chr18:23632525-23632866(-)$1	341	3	28	22.0805
gggggggtttttttttttggggggg	chr2:136437642-136437911(+)$1	269	19	44	22.4721
c[dddduuuuuuuuuuuudddd]cc	chr6:17624740-17625017(-)$1	277	72	97	24.6720
[eeeeevvvvvvvvvvvvveeeee]	chr13:47358289-47358522(-)$1	233	151	176	23.7018
ggggggvvvvvvvvvvvvvgggggg	chr9:114994278-114994508(-)$1	230	69	94	23.6942
feeeeevvvvvvvvvvvvveeeee:	chr8:126023711-126023962(+)$1	251	49	74	22.5775
b[dddduuuuuuuuuuuudddd22b	chr12:995006-995260(+)$1	254	219	244	24.0636
d[dddduuuuuuuuuuuuddddddd	chr2:26455022-26455247(-)$1	225	156	181	23.9197
a[cccwwwwwwwwwwwwwwccc]a]	chr1:115260617-115260908(-)$1	291	109	134	22.8600
cc!!ccctttttttttttccc22cc	chr14:39514307-39514629(-)$1	322	269	294	23.0950
!!eeeeettttttttttteeeee33	chr16:230618-230857(+)$1	239	102	127	23.3498
"ddddvvvvvvvvvvvvvdddd333	chr20:2945548-2945829(+)$1	281	151	176	24.4885
!eeeeettttttttttteeeee333	chr16:230614-230818(+)$1	204	107	132	23.1091
ffffffwwwwwwwwwwwwwwfffff	chr12:57106745-57106979(-)$1	234	127	152	20.7320
ggggggvvvvvvvvvvvvvgggggg	chr9:114994320-114994586(-)$1	266	147	172	23.6942
!!eeeeettttttttttteeeee]b	chr15:90809462-90809718(+)$1	256	81	106	22.8536
b[bbwwwwwwwwwwwwwwbbbb]bb	chr12:57005788-57006056(-)$1	268	172	197	19.7219
=======ttttttttttt=======	chr7:120767139-120767365(+)$1	226	25	50	22.9558
bddddvvvvvvvvvvvvvdddd444	chr7:92085719-92086027(+)$1	308	113	138	23.8323
a[ddddtttttttttttdddd]a22	chr11:102220633-102220894(+)$1	261	217	242	23.2475

#otherMatches

#Seq PSSM
GAUGUGGCUUUAAAACAUCCACAGG	chrX:53658265-53658535(-)$1	270	174	199	23.1818
CCAAUGGUAAGAUCUAACAUUUGGC	chr2:228416711-228416933(+)$1	222	116	141	23.4216
UGGCUCCUACCCCACACAGAGCUGC	chr7:75517308-75517684(+)$1	376	16	41	23.6806
UUGGCUGGACCCACUAAUGCCAUCU	chr12:53849681-53849885(+)$1	204	41	66	20.5119
UGGGUGUGCUCCCUUCGAAGGCCCA	chr1:28527187-28527452(-)$1	265	136	161	23.1477
UCUAGGUCCGGUUUAUCACUAAAAU	chr4:39757176-39757439(+)$1	263	95	120	23.6893
AGCCCAAGCCUCAGAUAUGGGAGGA	chr4:151738205-151738507(-)$1	302	197	222	23.8262
ACAGGUUUAAUGAUCACCUCUGCUG	chr11:125472662-125472923(+)$1	261	31	56	23.9372
GGAGCCCUUCAACUCUCUGGCACCA	chr12:57007636-57007869(-)$1	233	107	132	22.1819
CCUGCUGUAAAAUAUGAAGCUGCUG	chr11:14507832-14508141(-)$1	309	163	188	23.0180
CAUCUGUUCUACCUCUACCAGAUUG	chr8:17125664-17125943(+)$1	279	81	106	21.1090
AAACUCCGCAGGUAUCAAGGAAAUG	chr21:30698617-30698989(+)$1	372	80	105	22.7299
AAUUUUAACAAACGCAUUAAGAGGU	chr19:3976114-3976334(-)$1	220	97	122	20.7320
CCGAGAAUAUUCAGCACCUCACGGA	chr6:149700358-149700602(+)$1	244	191	216	22.6364
GUGUUCACCUAAAAACAGAGCUCCA	chr7:104752171-104752428(+)$1	257	206	231	23.4216
ACCCAGUCAGAGAAACAGUUUGUGG	chr3:128356634-128356896(-)$1	262	60	85	23.6167
UAAACAGAAAUCAGCCCACUGUUUA	chr6:149700011-149700298(+)$1	287	118	143	22.4721
ACACUAACAUCCAUCUCCUGGUAAC	chr20:49509337-49509602(-)$1	265	27	52	24.6169
CACAGCUUUUGUUUUUCUUGUUGUA	chr1:27059070-27059326(+)$1	256	70	95	21.9965
ACAUUGACCAGAACAAACAGGACCU	chr6:4892068-4892358(+)$1	290	52	77	23.2306
UGUUUUUCCCUGCACAACAAAAACA	chr1:93825959-93826278(+)$1	319	271	296	22.4721
UGAAAGGACAAUCUCAAACUUCACC	chr16:2813691-2813978(+)$1	287	7	32	24.4883
AAAUAGUCAGCUUCUAAAUUCUGUA	chr12:32134483-32134748(+)$1	265	140	165	22.7271
AUCAAAGUAAGUAGCAAAUUUGAUC	chr13:39591541-39591781(-)$1	240	139	164	22.0871
GUAACACAAUCAAACAAAGUUUCAG	chr7:77256288-77256549(+)$1	261	205	230	23.4162
CAGCAUAUUACUUUUCAGAUGCUGU	chr1:19501372-19501628(-)$1	256	83	108	21.3182
GCUUCAGUACCCUGACUAUGGAGUC	chr17:57721600-57721858(+)$1	258	70	95	23.6093
CAAAUCAUUACCUUAAUUUGAUGUU	chr10:70502056-70502291(+)$1	235	36	61	22.7577
CCAGUUUUAAACCGUAAAUUAGCUG	chr10:119044450-119044734(-)$1	284	105	130	21.0186
CACGUUCUCUCUCUCCUUGAAUCCU	chr1:150938967-150939206(-)$1	239	73	98	21.1880
CUGAAGUUUCUAUUUCUUUUUCAGG	chr11:18536135-18536420(-)$1	285	8	33	21.4772
CUCUGGUUGCUAUCCUACUCCAUGG	chr6:43481009-43481273(-)$1	264	127	152	24.0539
GAUAUUUCAUGUGAUUAAAUAGUAU	chr10:28878563-28878857(+)$1	294	41	66	22.3986
ACUAUGACUUUAGCAACCUCAGCAG	chr7:86541286-86541583(-)$1	297	83	108	23.3028
ACACUGCAGAGAUAACCCAACACAG	chr1:204379431-204379679(-)$1	248	150	175	20.4580
UUAGGCAGCAAAGGAACAUCUAGCC	chr6:149699483-149699732(+)$1	249	42	67	20.0409
CUGUGCAAACAGAUAUAUAGUACAG	chr22:22160087-22160347(-)$1	260	7	32	23.6942
UGGCCUUAAACCUAAGCAGGCUGAC	chr20:49510728-49510976(-)$1	248	175	200	22.0492
GACAGACCCCUUAUCCCUCUGGACA	chr1:21329107-21329398(-)$1	291	92	117	23.8428
CCAAUGGUAAGAUCUAACAUUUGGC	chr2:228416656-228416911(+)$1	255	171	196	23.4216
CCAGGCACCAGCUGCUCAGCCACUA	chr1:114504837-114505106(+)$1	269	171	196	23.5497
ACUGUUCAUUAGCUCAUUACAGGCA	chr12:48468005-48468238(-)$1	233	180	205	21.0394
caucugggugugugugagcaagugu	chr11:47380085-47380337(-)$1	252	197	222	22.6945
AAGGCCACCUCAAAAUAACCCACUU	chr20:33345066-33345347(-)$1	281	161	186	20.9466
UAUGGACCAUCUGUUUAACUUUCAU	chr18:23632525-23632866(-)$1	341	3	28	22.0805
GUUUAUGGAGGUUGAAAACAUAAAC	chr2:136437642-136437911(+)$1	269	19	44	22.4721
UUUGGAUCUAUAUCAUCUUCCACAG	chr6:17624740-17625017(-)$1	277	72	97	24.6720
CUAGAUAUCCUUUGUAAAAAUCUAA	chr13:47358289-47358522(-)$1	233	151	176	23.7018
UCCUGGGGCUAGUGGUAUACCAGGA	chr9:114994278-114994508(-)$1	230	69	94	23.6942
UGGUGGGAUUUAUUGCAGAUCACCU	chr8:126023711-126023962(+)$1	251	49	74	22.5775
CAAGCCACCUCUAACUAAGGCUCCG	chr12:995006-995260(+)$1	254	219	244	24.0636
UACCCCUGAAGUUUUGCUGGGGGCC	chr2:26455022-26455247(-)$1	225	156	181	23.9197
CAUUGACUAACCACAUCCACAAAGC	chr1:115260617-115260908(-)$1	291	109	134	22.8600
GGGACAGAAAAAAAUAAAUUGGUCU	chr14:39514307-39514629(-)$1	322	269	294	23.0950
CCGGCUCCUCACAAGUCAGAGCCCA	chr16:230618-230857(+)$1	239	102	127	23.3498
AAGAACAGCAAGCACCAAUUCUAUA	chr20:2945548-2945829(+)$1	281	151	176	24.4885
CGGCUCCUCACAAGUCAGAGCCCAC	chr16:230614-230818(+)$1	204	107	132	23.1091
GGAAGAGGUAUACUAGGAAAUCUUU	chr12:57106745-57106979(-)$1	234	127	152	20.7320
UCCUGGGGCUAGUGGUAUACCAGGA	chr9:114994320-114994586(-)$1	266	147	172	23.6942
AAUCCGAUUCCAGAAAAUUCGGAGG	chr15:90809462-90809718(+)$1	256	81	106	22.8536
UCGCCAACAACCUCCCCAGCAGUCU	chr12:57005788-57006056(-)$1	268	172	197	19.7219
CAAGAUUAUGAUAAUAUGGAUUUUG	chr7:120767139-120767365(+)$1	226	25	50	22.9558
CUCCUGCAAUAACAAUUAAGGAAUC	chr7:92085719-92086027(+)$1	308	113	138	23.8323
UGCUGGAUAACUGGAAACUAGGAGA	chr11:102220633-102220894(+)$1	261	217	242	23.2475

#DB
..(((((...........)))))..	chrX:53658265-53658535(-)$1	1	174	199	23.1818
(.((((...........)))).)))	chr2:228416711-228416933(+)$1	1	116	141	23.4216
.(((((............)))))).	chr7:75517308-75517684(+)$1	1	16	41	23.6806
.((((.............))))...	chr12:53849681-53849885(+)$1	1	41	66	20.5119
(((((.(...........).)))))	chr1:28527187-28527452(-)$1	1	136	161	23.1477
(.(((.............))).)))	chr4:39757176-39757439(+)$1	1	95	120	23.6893
..((((...........))))....	chr4:151738205-151738507(-)$1	1	197	222	23.8262
.((((.............))))..)	chr11:125472662-125472923(+)$1	1	31	56	23.9372
)))(((............)))..((	chr12:57007636-57007869(-)$1	1	107	132	22.1819
...(((...........))).))))	chr11:14507832-14508141(-)$1	1	163	188	23.0180
.(((((............)))))..	chr8:17125664-17125943(+)$1	1	81	106	21.1090
(...(((...........)))..))	chr21:30698617-30698989(+)$1	1	80	105	22.7299
((((((..............)))))	chr19:3976114-3976334(-)$1	1	97	122	20.7320
(((.((............)).))).	chr6:149700358-149700602(+)$1	1	191	216	22.6364
(.((((...........)))).)))	chr7:104752171-104752428(+)$1	1	206	231	23.4216
((((((.............))).))	chr3:128356634-128356896(-)$1	1	60	85	23.6167
(((((((...........)))))))	chr6:149700011-149700298(+)$1	1	118	143	22.4721
..((((............)))).))	chr20:49509337-49509602(-)$1	1	27	52	24.6169
.(((((.............))))).	chr1:27059070-27059326(+)$1	1	70	95	21.9965
...(((...........)))...))	chr6:4892068-4892358(+)$1	1	52	77	23.2306
(((((((...........)))))))	chr1:93825959-93826278(+)$1	1	271	296	22.4721
((.(((............)))...)	chr16:2813691-2813978(+)$1	1	7	32	24.4883
..((((..............)))).	chr12:32134483-32134748(+)$1	1	140	165	22.7271
..((((............))))(((	chr13:39591541-39591781(-)$1	1	139	164	22.0871
(.(((.............))).)).	chr7:77256288-77256549(+)$1	1	205	230	23.4162
((((((............)))))))	chr1:19501372-19501628(-)$1	1	83	108	21.3182
((((((............)))))))	chr17:57721600-57721858(+)$1	1	70	95	23.6093
(((((((...........)))).))	chr10:70502056-70502291(+)$1	1	36	61	22.7577
.(((((..............)))))	chr10:119044450-119044734(-)$1	1	105	130	21.0186
(..((((...........))))...	chr1:150938967-150939206(-)$1	1	73	98	21.1880
((((((............)))))).	chr11:18536135-18536420(-)$1	1	8	33	21.4772
((((((.............))).))	chr6:43481009-43481273(-)$1	1	127	152	24.0539
((((((..............)))))	chr10:28878563-28878857(+)$1	1	41	66	22.3986
(((.(((...........)))..))	chr7:86541286-86541583(-)$1	1	83	108	23.3028
..((((................)))	chr1:204379431-204379679(-)$1	1	150	175	20.4580
..((((................)))	chr6:149699483-149699732(+)$1	1	42	67	20.0409
((((((.............))))))	chr22:22160087-22160347(-)$1	1	7	32	23.6942
..((((...........))))))).	chr20:49510728-49510976(-)$1	1	175	200	22.0492
..((((...........))))...)	chr1:21329107-21329398(-)$1	1	92	117	23.8428
(.((((...........)))).)))	chr2:228416656-228416911(+)$1	1	171	196	23.4216
...(((............)))..))	chr1:114504837-114505106(+)$1	1	171	196	23.5497
.((((.............)))))))	chr12:48468005-48468238(-)$1	1	180	205	21.0394
(((.((............)).))))	chr11:47380085-47380337(-)$1	1	197	222	22.6945
..((..............))....)	chr20:33345066-33345347(-)$1	1	161	186	20.9466
((((((..............)))))	chr18:23632525-23632866(-)$1	1	3	28	22.0805
(((((((...........)))))))	chr2:136437642-136437911(+)$1	1	19	44	22.4721
(.((((............)))).))	chr6:17624740-17625017(-)$1	1	72	97	24.6720
.(((((.............))))).	chr13:47358289-47358522(-)$1	1	151	176	23.7018
((((((.............))))))	chr9:114994278-114994508(-)$1	1	69	94	23.6942
)(((((.............))))).	chr8:126023711-126023962(+)$1	1	49	74	22.5775
(.((((............))))..)	chr12:995006-995260(+)$1	1	219	244	24.0636
(.((((............)))))))	chr2:26455022-26455247(-)$1	1	156	181	23.9197
(.(((..............))).).	chr1:115260617-115260908(-)$1	1	109	134	22.8600
((..(((...........)))..))	chr14:39514307-39514629(-)$1	1	269	294	23.0950
..(((((...........)))))..	chr16:230618-230857(+)$1	1	102	127	23.3498
.((((.............))))...	chr20:2945548-2945829(+)$1	1	151	176	24.4885
.(((((...........)))))...	chr16:230614-230818(+)$1	1	107	132	23.1091
((((((..............)))))	chr12:57106745-57106979(-)$1	1	127	152	20.7320
((((((.............))))))	chr9:114994320-114994586(-)$1	1	147	172	23.6942
..(((((...........))))).)	chr15:90809462-90809718(+)$1	1	81	106	22.8536
(.((..............)))).))	chr12:57005788-57006056(-)$1	1	172	197	19.7219
(((((((...........)))))))	chr7:120767139-120767365(+)$1	1	25	50	22.9558
(((((.............))))...	chr7:92085719-92086027(+)$1	1	113	138	23.8323
(.((((...........)))).)..	chr11:102220633-102220894(+)$1	1	217	242	23.2475

#PSSM
g : 0.15	c : 0.14	! : 0.10	: : 0.09	d : 0.07	f : 0.07	" : 0.06	b : 0.06	# : 0.04	= : 0.04	[ : 0.03	$ : 0.03	a : 0.03	e : 0.01	+ : 0.01	
[ : 0.17	g : 0.15	e : 0.10	d : 0.10	! : 0.09	c : 0.07	" : 0.06	f : 0.06	# : 0.04	= : 0.04	$ : 0.03	: : 0.01	+ : 0.01	
d : 0.34	e : 0.15	g : 0.15	c : 0.09	f : 0.06	= : 0.04	" : 0.03	! : 0.03	b : 0.03	# : 0.01	[ : 0.01	$ : 0.01	
d : 0.34	e : 0.15	c : 0.15	g : 0.14	f : 0.06	[ : 0.04	= : 0.03	b : 0.03	" : 0.01	! : 0.01	
d : 0.34	c : 0.20	e : 0.15	g : 0.14	f : 0.06	b : 0.03	= : 0.03	w : 0.03	
d : 0.26	e : 0.15	c : 0.15	g : 0.12	v : 0.10	f : 0.06	w : 0.04	b : 0.03	= : 0.03	[ : 0.01	
u : 0.23	v : 0.23	t : 0.15	w : 0.14	e : 0.04	c : 0.04	g : 0.04	d : 0.03	y : 0.03	a : 0.01	= : 0.01	
t : 0.35	u : 0.23	v : 0.23	w : 0.14	y : 0.03	
t : 0.35	u : 0.23	v : 0.23	w : 0.14	y : 0.03	
t : 0.35	u : 0.23	v : 0.23	w : 0.14	y : 0.03	
t : 0.35	u : 0.23	v : 0.23	w : 0.14	y : 0.03	
t : 0.35	u : 0.23	v : 0.23	w : 0.14	y : 0.03	
t : 0.35	u : 0.23	v : 0.23	w : 0.14	y : 0.03	
t : 0.35	u : 0.23	v : 0.23	w : 0.14	y : 0.03	
t : 0.35	u : 0.23	v : 0.23	w : 0.14	y : 0.03	
t : 0.35	u : 0.23	v : 0.23	w : 0.14	y : 0.03	
t : 0.35	u : 0.23	v : 0.23	w : 0.14	y : 0.03	
u : 0.23	v : 0.23	t : 0.20	w : 0.14	d : 0.10	c : 0.03	y : 0.03	e : 0.01	
d : 0.29	c : 0.15	v : 0.12	w : 0.10	e : 0.09	b : 0.06	g : 0.06	f : 0.03	y : 0.03	a : 0.01	= : 0.01	
d : 0.29	c : 0.20	e : 0.14	g : 0.10	w : 0.09	b : 0.06	f : 0.03	y : 0.03	] : 0.01	= : 0.01	
d : 0.31	c : 0.17	e : 0.15	g : 0.14	f : 0.06	] : 0.04	= : 0.03	y : 0.03	3 : 0.01	4 : 0.01	b : 0.01	
d : 0.20	e : 0.17	g : 0.15	] : 0.09	c : 0.07	2 : 0.06	f : 0.06	3 : 0.04	4 : 0.03	= : 0.03	y : 0.03	: : 0.01	b : 0.01	
e : 0.17	g : 0.15	] : 0.10	2 : 0.09	c : 0.07	3 : 0.07	d : 0.07	f : 0.06	4 : 0.04	: : 0.03	= : 0.03	b : 0.01	5 : 0.01	H : 0.01	a : 0.01	
g : 0.17	c : 0.12	e : 0.12	d : 0.12	f : 0.07	3 : 0.07	4 : 0.06	2 : 0.04	= : 0.04	a : 0.03	: : 0.03	b : 0.03	5 : 0.01	H : 0.01	] : 0.01	
g : 0.17	c : 0.12	d : 0.12	] : 0.09	e : 0.09	: : 0.07	3 : 0.06	4 : 0.04	f : 0.04	= : 0.04	b : 0.04	D : 0.01	5 : 0.01	H : 0.01	2 : 0.01	

#score	1456.3341917038706
#seq	64
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_UTR_m1_run2.txt

#BEAR
bb!!iiiiiiiiirrrrrrrrriiiiiiiii22bb]ccc	chr5:151185803-151186098(+)$1	295	196	235	16.5909
bb[===============mmmm===============]b	chr17:38612879-38613182(+)$1	303	80	119	23.5080
==========!!cccooooooccc22==========22b	chr11:67202637-67202923(+)$1	286	218	257	21.6943
q==============4444ffffff]==========ddd	chr11:61067097-61067386(-)$1	289	235	274	19.0661
A================mmmm================::	chr1:150208244-150208526(-)$1	282	112	151	21.9662
================qqqqqqqq===============	chr2:96850667-96850871(-)$1	204	69	108	22.1427
"================mmmm================33	chr6:47592339-47592672(+)$1	333	98	137	24.6656
BB============wwwwwwwwwwwwww===========	chr9:116169424-116169717(-)$1	293	42	81	17.1703
dd[==============[a[a[===============""	chr9:138899237-138899482(-)$1	245	54	93	20.8365
iiiiiffffff"""cccmmmmccc]ffffff333iiiii	chr3:63988057-63988342(+)$1	285	118	157	15.0006
gggg[bb[ccc"""cccmmmmccc22ccc]bb333gggg	chr8:141745340-141745657(-)$1	317	146	185	14.7226
###===========wwwwwwwwwwwwww===========	chr1:32372173-32372476(-)$1	303	108	147	18.7169
================qqqqqqqq===============	chr2:96850671-96850893(-)$1	222	91	130	22.1427
$$===========ddddmmmmdddd22===========5	chr12:53806747-53807018(+)$1	271	99	138	19.9001
iiiiiiii[eeeee[bbmmmmbb]eeeee]iiiiiiiii	chr6:17759645-17759867(-)$1	222	120	159	15.5568
==========!!bbqqqqqqqqbb22============]	chr4:2069745-2070056(+)$1	311	34	73	19.1062
q==============4444ffffff]==========333	chr11:61067055-61067297(-)$1	242	146	185	19.8253
#a[==========ddddnnnnndddd]==========]a	chr16:8951855-8952237(-)$1	382	244	283	20.2088
bb[===========cccmmmmccc22===========]b	chr22:21801991-21802215(+)$1	224	105	144	23.3349
[a[iiiiiiiii!!bboooooobb]iiiiiiiii]a]dd	chr3:33909322-33909586(+)$1	264	85	124	19.5969
:===============ppppppp===============:	chr17:56167562-56167807(+)$1	245	171	210	18.6397
cc[===============mmmm===============]c	chr5:149233763-149234036(+)$1	273	127	166	23.6536
dd[==============nnnnn==============ddd	chr2:201843841-201844113(-)$1	272	111	150	22.0705
bb[==========!!ccclllccc==========]bbdd	chr10:94451903-94452161(+)$1	258	156	195	21.3882
:=========="""cccmmmmccc333==========DD	chr7:138989147-138989423(+)$1	276	124	163	20.4028
================qqqqqqqq===============	chr2:96850706-96850941(-)$1	235	139	178	22.1427
)==============[annnnna]==============7	chr1:42643248-42643507(-)$1	259	27	66	22.2942
!!=========="""bbnnnnnbb333==========]c	chr20:46283505-46283792(+)$1	287	190	229	21.8386
#ccc[============mmmm============]cccee	chr17:40462687-40462977(+)$1	290	91	130	21.3492
cc####ggggggg[cccmmmmccc]ggggggg4444ccc	chr5:126250308-126250579(-)$1	271	48	87	16.4308
cc[==========!!bblllbb]==========]ccc]b	chr11:32608569-32608791(+)$1	222	5	44	20.5819
==========[ccc[bbnnnnnbb22ccc]=========	chr1:36180803-36181099(-)$1	296	159	198	19.1940
bb[===========cccmmmmccc22===========]b	chr22:21802016-21802226(+)$1	210	80	119	23.3349
gggg!!==============lll==============99	chr9:34087737-34087992(-)$1	255	16	55	20.3138
==========="""cccmmmmccc22=============	chr5:140085888-140086163(+)$1	275	121	160	23.4843
bb:==========[cccqqqqqqqqccc]==========	chr6:36063810-36064169(+)$1	359	185	224	17.7250
####==========qqqqqqqq==========4444===	chr16:89980671-89981025(+)$1	354	218	257	19.9524
================qqqqqqqq===============	chr2:96850593-96850845(-)$1	252	43	82	22.1427
========"""eeeeeooooooeeeee===========e	chr17:40353217-40353478(-)$1	261	72	111	19.4657
gggg!!ggggggg[cccmmmmccc]gggggggggggggg	chr16:23478172-23478450(-)$1	278	13	52	16.4969
#dddd[===========mmmm===========dddd444	chr3:138671197-138671457(+)$1	260	107	146	19.3262
============[ddddmmmmdddd]=============	chr16:89980348-89980643(+)$1	295	131	170	21.5596
===============[aooooooa]==============	chr19:40738495-40738734(-)$1	239	72	111	24.5564
=================oooooo================	chr16:29679255-29679464(+)$1	209	28	67	24.8997
==========!!cccooooooccc22===========00	chr6:34555373-34555710(-)$1	337	51	90	21.8761
ee####iiiiiiiiiooooooiiiiiiiii4444eeeee	chr11:5269237-5269512(-)$1	275	46	85	17.3011
bb[==============mmmm==============bbcc	chr20:32264088-32264388(-)$1	300	188	227	22.8496
ddd[iiiiiiiii[cccmmmmccc]iiiiiiiii22ddd	chr4:16163630-16163973(-)$1	343	113	152	18.3532
###a[==========ccclllccc]==========]a55	chr3:157820556-157820842(-)$1	286	22	61	20.9820
c::==============oooooo==============::	chr21:30716863-30717151(+)$1	288	112	151	20.2191
]eeeee]===========]================hhhh	chr7:129395182-129395465(+)$1	283	171	210	17.3345

#otherMatches

#Seq PSSM
GAAAAUAGAAAGCUUCCCCAGUGCUUUCUGUCAUCAGAG	chr5:151185803-151186098(+)$1	295	196	235	16.5909
CAAAugcgcgugugcacgugugcgugugcgugcgugugu	chr17:38612879-38613182(+)$1	303	80	119	23.5080
UAAAGGGCUGAAUCAUGGUGCUGACCUGGCUCUUUGUGC	chr11:67202637-67202923(+)$1	286	218	257	21.6943
AAGUGAGACCUUCCUUUUACUUUUCUUCUAUUGCCUCUG	chr11:61067097-61067386(-)$1	289	235	274	19.0661
uguauguguguguguaugugugugcgcgcgugcgugcgu	chr1:150208244-150208526(-)$1	282	112	151	21.9662
GUGUGUGUGUGUGUGCGUCUGCGAGCGCACACACAUGCA	chr2:96850667-96850871(-)$1	204	69	108	22.1427
uguguguguguguguguguguauauauauauauauauuu	chr6:47592339-47592672(+)$1	333	98	137	24.6656
UGCUCCAAGCGCUUUUUGUUUCUAAGUUGAGUGCUUGGG	chr9:116169424-116169717(-)$1	293	42	81	17.1703
GAgugugcgugugcgcgugucugugugugugugcguguc	chr9:138899237-138899482(-)$1	245	54	93	20.8365
ugugugugugccugugcguguguguguAUACUCAGCACA	chr3:63988057-63988342(+)$1	285	118	157	15.0006
UCAAGGAGUGAAGAACAAUGAUGUAAUCGGUCGAAUUGA	chr8:141745340-141745657(-)$1	317	146	185	14.7226
guguguguguguaugugugugugugugugugCACGCGCA	chr1:32372173-32372476(-)$1	303	108	147	18.7169
GUGUGUGUGUGUGUGCGUCUGCGAGCGCACACACAUGCA	chr2:96850671-96850893(-)$1	222	91	130	22.1427
UGUAUGUGUGGGUGAAUGUGUGUUCAUGCCCGUAUAUGU	chr12:53806747-53807018(+)$1	271	99	138	19.9001
AGAGAGAAUGGGUAGAGCCUGCUGUACCUUUUUUCUUUU	chr6:17759645-17759867(-)$1	222	120	159	15.5568
UUUUUUAAAACAGCAAUAAUUAGCCAUUUUAAAGGAGGG	chr4:2069745-2070056(+)$1	311	34	73	19.1062
AAGUGAGACCUUCCUUUUACUUUUCUUCUAUUGCCUCUG	chr11:61067055-61067297(-)$1	242	146	185	19.8253
AGGCUGGGGGCGACACGGUACUUGUGAUUGUCCCUGGGU	chr16:8951855-8952237(-)$1	382	244	283	20.2088
gugugucuauguguggugugugCCGUAUGCAUGGGCAGA	chr22:21801991-21802215(+)$1	224	105	144	23.3349
GAUUUAUAUUUUAAAUGUUCGAAUGAAAGUAUGAUUGUA	chr3:33909322-33909586(+)$1	264	85	124	19.5969
UGGGGAUAUCUGUUUUGAAAAUAAAGAUAGGUGUCCCCU	chr17:56167562-56167807(+)$1	245	171	210	18.6397
gggguguguguguguguaucugugCACACAUACACACGU	chr5:149233763-149234036(+)$1	273	127	166	23.6536
uguguguguguguguaugguguguauauguAUAUAUCAC	chr2:201843841-201844113(-)$1	272	111	150	22.0705
ACAGCUCUGGGGUCUGGCCAGGCCGCUCCAGGGCAGUGG	chr10:94451903-94452161(+)$1	258	156	195	21.3882
GGAGUGUGUGUGUAAAUUUAAAUUGUAGCACAUAUUCAG	chr7:138989147-138989423(+)$1	276	124	163	20.4028
GUGUGUGUGUGUGUGCGUCUGCGAGCGCACACACAUGCA	chr2:96850706-96850941(-)$1	235	139	178	22.1427
Cugugugugugugcugugugugagagugugcgcgcgcgu	chr1:42643248-42643507(-)$1	259	27	66	22.2942
UCCCAUAUUGAGAUCUCGAGUAGAAUCCUUGGUGUGGUU	chr20:46283505-46283792(+)$1	287	190	229	21.8386
UGCAGGCAUGCAUGUGCUugugugugugugugugugugu	chr17:40462687-40462977(+)$1	290	91	130	21.3492
ACUGAAGCACGGUAAUAGCUAUGUGACugugugugugug	chr5:126250308-126250579(-)$1	271	48	87	16.4308
UUAUCUGAAAUCUAAAGGAGCUGAGAUUUCAGAAGAGAA	chr11:32608569-32608791(+)$1	222	5	44	20.5819
UGCAUGUGUAGACAGGUACCCAGCAGUGUGUGUAUAUGC	chr1:36180803-36181099(-)$1	296	159	198	19.1940
gugugucuauguguggugugugCCGUAUGCAUGGGCAGA	chr22:21802016-21802226(+)$1	210	80	119	23.3349
AUGGUUGCUCUCAGACUUUCUGUGAAAGUUUGGGAGCug	chr9:34087737-34087992(-)$1	255	16	55	20.3138
UUUGUGUCUGAUGAGUUUUUUAACAUUCAGGUGUAGAUU	chr5:140085888-140086163(+)$1	275	121	160	23.4843
gugugugcgugcacgcaugugugccugcuugcaugcaca	chr6:36063810-36064169(+)$1	359	185	224	17.7250
Uugugugugcgccugugugugggggugcacauuugugug	chr16:89980671-89981025(+)$1	354	218	257	19.9524
GUGUGUGUGUGUGUGCGUCUGCGAGCGCACACACAUGCA	chr2:96850593-96850845(-)$1	252	43	82	22.1427
CAUGUGUCUUAAGAGUGGCUGGACUUUGACAUGUGGCUG	chr17:40353217-40353478(-)$1	261	72	111	19.4657
UGGGGCAGAGAGUAUCUACUUGGGCACUCUCUUCCAAGA	chr16:23478172-23478450(-)$1	278	13	52	16.4969
guguguguguauguguguguguaugugugCACUAUAACU	chr3:138671197-138671457(+)$1	260	107	146	19.3262
ugcgcacguauguauguguguacauuuguauguguguac	chr16:89980348-89980643(+)$1	295	131	170	21.5596
ACGCAGGCACACGUGGGUGUGUGUGCAUGUGUGUUUGUG	chr19:40738495-40738734(-)$1	239	72	111	24.5564
cacaugugugugcgcaugugugugugugcgcgcaugugu	chr16:29679255-29679464(+)$1	209	28	67	24.8997
GUCUGAACCCAGUUGGGGAGACAGAGGGGUUCAGACUUG	chr6:34555373-34555710(-)$1	337	51	90	21.8761
UUAAAUAUAUGAGCCACAAAGGGUUUAUAUUGAGGGAAG	chr11:5269237-5269512(-)$1	275	46	85	17.3011
CCACAUGUGUGUGCAUGAGUCCAUGUGUGCGCGUGGGGG	chr20:32264088-32264388(-)$1	300	188	227	22.8496
AGGGUGGGCCUGUGCUGGGGAUGGGGCAGGCCUGGGUCU	chr4:16163630-16163973(-)$1	343	113	152	18.3532
UUCCACGAGGGGGAAGGAUUCUCUAUUCUUUUUUGCGAC	chr3:157820556-157820842(-)$1	286	22	61	20.9820
uguguguguguguguauguguauguauACAUAUAUAUCU	chr21:30716863-30717151(+)$1	288	112	151	20.2191
acacauuuacauauauauaaaguauauauauacauauau	chr7:129395182-129395465(+)$1	283	171	210	17.3345

#DB
((..(((((((((.........)))))))))..)).)))	chr5:151185803-151186098(+)$1	1	196	235	16.5909
((.(((((((((((((((....))))))))))))))).)	chr17:38612879-38613182(+)$1	1	80	119	23.5080
((((((((((..(((......)))..))))))))))..)	chr11:67202637-67202923(+)$1	1	218	257	21.6943
.))))))))))))))....)))))).))))))))))(((	chr11:61067097-61067386(-)$1	1	235	274	19.0661
(((((((((((((((((....))))))))))))))))..	chr1:150208244-150208526(-)$1	1	112	151	21.9662
((((((((((((((((........)))))))))))))))	chr2:96850667-96850871(-)$1	1	69	108	22.1427
.((((((((((((((((....))))))))))))))))..	chr6:47592339-47592672(+)$1	1	98	137	24.6656
((((((((((((((..............)))))))))))	chr9:116169424-116169717(-)$1	1	42	81	17.1703
((.((((((((((((((.(.(.(((((((((((((((..	chr9:138899237-138899482(-)$1	1	54	93	20.8365
(((((((((((...(((....))).))))))...)))))	chr3:63988057-63988342(+)$1	1	118	157	15.0006
((((.((.(((...(((....)))..))).))...))))	chr8:141745340-141745657(-)$1	1	146	185	14.7226
...(((((((((((..............)))))))))))	chr1:32372173-32372476(-)$1	1	108	147	18.7169
((((((((((((((((........)))))))))))))))	chr2:96850671-96850893(-)$1	1	91	130	22.1427
..(((((((((((((((....))))..))))))))))).	chr12:53806747-53807018(+)$1	1	99	138	19.9001
((((((((.(((((.((....)).))))).)))))))))	chr6:17759645-17759867(-)$1	1	120	159	15.5568
((((((((((..((........))..)))))))))))).	chr4:2069745-2070056(+)$1	1	34	73	19.1062
.))))))))))))))....)))))).))))))))))...	chr11:61067055-61067297(-)$1	1	146	185	19.8253
.(.((((((((((((((.....)))).)))))))))).)	chr16:8951855-8952237(-)$1	1	244	283	20.2088
((.((((((((((((((....)))..))))))))))).)	chr22:21801991-21802215(+)$1	1	105	144	23.3349
.(.(((((((((..((......)).))))))))).).))	chr3:33909322-33909586(+)$1	1	85	124	19.5969
.(((((((((((((((.......))))))))))))))).	chr17:56167562-56167807(+)$1	1	171	210	18.6397
((.(((((((((((((((....))))))))))))))).)	chr5:149233763-149234036(+)$1	1	127	166	23.6536
((.((((((((((((((.....)))))))))))))))))	chr2:201843841-201844113(-)$1	1	111	150	22.0705
((.((((((((((..(((...))))))))))))).))))	chr10:94451903-94452161(+)$1	1	156	195	21.3882
.((((((((((...(((....)))...))))))))))))	chr7:138989147-138989423(+)$1	1	124	163	20.4028
((((((((((((((((........)))))))))))))))	chr2:96850706-96850941(-)$1	1	139	178	22.1427
.((((((((((((((.(.....).)))))))))))))).	chr1:42643248-42643507(-)$1	1	27	66	22.2942
..((((((((((...((.....))...)))))))))).)	chr20:46283505-46283792(+)$1	1	190	229	21.8386
.(((.((((((((((((....)))))))))))).)))))	chr17:40462687-40462977(+)$1	1	91	130	21.3492
((....(((((((.(((....))).)))))))....)))	chr5:126250308-126250579(-)$1	1	48	87	16.4308
((.((((((((((..((...)).)))))))))).))).)	chr11:32608569-32608791(+)$1	1	5	44	20.5819
((((((((((.(((.((.....))..))).)))))))))	chr1:36180803-36181099(-)$1	1	159	198	19.1940
((.((((((((((((((....)))..))))))))))).)	chr22:21802016-21802226(+)$1	1	80	119	23.3349
((((..((((((((((((((...))))))))))))))..	chr9:34087737-34087992(-)$1	1	16	55	20.3138
(((((((((((...(((....)))..)))))))))))))	chr5:140085888-140086163(+)$1	1	121	160	23.4843
)).((((((((((.(((........))).))))))))))	chr6:36063810-36064169(+)$1	1	185	224	17.7250
....((((((((((........))))))))))....)))	chr16:89980671-89981025(+)$1	1	218	257	19.9524
((((((((((((((((........)))))))))))))))	chr2:96850593-96850845(-)$1	1	43	82	22.1427
((((((((...(((((......))))))))))))))))(	chr17:40353217-40353478(-)$1	1	72	111	19.4657
((((..(((((((.(((....))).))))))))))))))	chr16:23478172-23478450(-)$1	1	13	52	16.4969
.((((.(((((((((((....)))))))))))))))...	chr3:138671197-138671457(+)$1	1	107	146	19.3262
((((((((((((.((((....)))).)))))))))))))	chr16:89980348-89980643(+)$1	1	131	170	21.5596
(((((((((((((((.(......).))))))))))))))	chr19:40738495-40738734(-)$1	1	72	111	24.5564
(((((((((((((((((......))))))))))))))))	chr16:29679255-29679464(+)$1	1	28	67	24.8997
((((((((((..(((......)))..)))))))))))..	chr6:34555373-34555710(-)$1	1	51	90	21.8761
((....(((((((((......)))))))))....)))))	chr11:5269237-5269512(-)$1	1	46	85	17.3011
((.((((((((((((((....))))))))))))))))))	chr20:32264088-32264388(-)$1	1	188	227	22.8496
(((.(((((((((.(((....))).)))))))))..)))	chr4:16163630-16163973(-)$1	1	113	152	18.3532
...(.(((((((((((((...))).)))))))))).)..	chr3:157820556-157820842(-)$1	1	22	61	20.9820
)..((((((((((((((......))))))))))))))..	chr21:30716863-30717151(+)$1	1	112	151	20.2191
.))))).))))))))))).))))))))))))))))((((	chr7:129395182-129395465(+)$1	1	171	210	17.3345

#PSSM
= : 0.25	b : 0.13	# : 0.11	c : 0.07	d : 0.05	g : 0.05	q : 0.03	i : 0.03	: : 0.03	A : 0.01	" : 0.01	B : 0.01	$ : 0.01	[ : 0.01	) : 0.01	! : 0.01	e : 0.01	] : 0.01	
= : 0.39	b : 0.13	d : 0.07	c : 0.07	g : 0.05	# : 0.05	i : 0.03	a : 0.03	e : 0.03	B : 0.01	$ : 0.01	! : 0.01	: : 0.01	
= : 0.45	[ : 0.21	# : 0.09	g : 0.05	i : 0.03	: : 0.03	d : 0.03	! : 0.01	c : 0.01	e : 0.01	
= : 0.70	i : 0.05	g : 0.05	# : 0.05	! : 0.01	c : 0.01	d : 0.01	[ : 0.01	a : 0.01	e : 0.01	
= : 0.72	i : 0.09	[ : 0.05	# : 0.03	! : 0.03	d : 0.01	e : 0.01	
= : 0.76	i : 0.07	# : 0.03	! : 0.03	f : 0.01	b : 0.01	[ : 0.01	e : 0.01	
= : 0.80	i : 0.09	g : 0.03	f : 0.01	b : 0.01	] : 0.01	
= : 0.82	i : 0.09	g : 0.03	f : 0.01	[ : 0.01	
= : 0.80	i : 0.07	g : 0.03	f : 0.01	c : 0.01	[ : 0.01	" : 0.01	
= : 0.80	i : 0.07	g : 0.03	f : 0.01	c : 0.01	e : 0.01	" : 0.01	
= : 0.72	i : 0.07	! : 0.05	g : 0.03	f : 0.01	c : 0.01	e : 0.01	[ : 0.01	" : 0.01	
= : 0.68	i : 0.07	" : 0.07	! : 0.05	e : 0.03	g : 0.03	c : 0.01	
= : 0.64	" : 0.09	i : 0.05	c : 0.05	e : 0.03	g : 0.03	b : 0.01	! : 0.01	[ : 0.01	
= : 0.54	" : 0.09	[ : 0.07	c : 0.05	d : 0.05	! : 0.05	e : 0.03	r : 0.01	b : 0.01	i : 0.01	
= : 0.45	c : 0.23	d : 0.05	w : 0.03	[ : 0.03	q : 0.03	! : 0.03	r : 0.01	b : 0.01	" : 0.01	e : 0.01	i : 0.01	
= : 0.35	c : 0.23	b : 0.09	o : 0.05	d : 0.05	4 : 0.03	w : 0.03	q : 0.03	[ : 0.03	r : 0.01	e : 0.01	
= : 0.25	c : 0.23	q : 0.11	o : 0.09	b : 0.07	d : 0.05	4 : 0.03	w : 0.03	a : 0.03	r : 0.01	p : 0.01	
m : 0.33	o : 0.15	q : 0.13	n : 0.09	= : 0.07	4 : 0.03	w : 0.03	c : 0.03	r : 0.01	[ : 0.01	p : 0.01	l : 0.01	
m : 0.37	o : 0.15	q : 0.13	n : 0.09	l : 0.05	4 : 0.03	w : 0.03	r : 0.01	a : 0.01	p : 0.01	= : 0.01	] : 0.01	
m : 0.37	o : 0.15	q : 0.13	n : 0.09	l : 0.05	f : 0.03	w : 0.03	= : 0.03	r : 0.01	[ : 0.01	p : 0.01	
m : 0.37	o : 0.15	q : 0.13	n : 0.09	l : 0.05	f : 0.03	w : 0.03	r : 0.01	a : 0.01	p : 0.01	b : 0.01	= : 0.01	
c : 0.25	q : 0.13	= : 0.11	n : 0.09	o : 0.09	m : 0.03	f : 0.03	w : 0.03	d : 0.03	b : 0.03	r : 0.01	[ : 0.01	p : 0.01	l : 0.01	i : 0.01	
c : 0.25	= : 0.21	q : 0.09	b : 0.09	d : 0.05	o : 0.05	i : 0.03	f : 0.03	w : 0.03	p : 0.01	a : 0.01	] : 0.01	l : 0.01	e : 0.01	
= : 0.31	c : 0.25	q : 0.09	b : 0.07	d : 0.05	i : 0.03	f : 0.03	w : 0.03	] : 0.03	e : 0.01	a : 0.01	
= : 0.43	2 : 0.15	] : 0.13	d : 0.05	i : 0.03	f : 0.03	w : 0.03	e : 0.03	3 : 0.03	q : 0.01	
= : 0.47	2 : 0.17	i : 0.07	] : 0.05	w : 0.03	e : 0.03	3 : 0.03	g : 0.03	f : 0.01	d : 0.01	c : 0.01	
= : 0.64	i : 0.07	c : 0.05	w : 0.03	e : 0.03	3 : 0.03	g : 0.03	f : 0.01	2 : 0.01	] : 0.01	
= : 0.74	i : 0.07	c : 0.05	w : 0.03	g : 0.03	f : 0.01	e : 0.01	
= : 0.78	i : 0.07	c : 0.03	g : 0.03	f : 0.01	e : 0.01	] : 0.01	
= : 0.80	i : 0.07	] : 0.05	g : 0.03	f : 0.01	
= : 0.82	i : 0.07	g : 0.03	f : 0.01	b : 0.01	4 : 0.01	
= : 0.82	i : 0.05	g : 0.03	2 : 0.01	3 : 0.01	b : 0.01	4 : 0.01	
= : 0.78	i : 0.05	4 : 0.05	3 : 0.03	2 : 0.01	g : 0.01	d : 0.01	
= : 0.74	i : 0.05	4 : 0.05	3 : 0.03	] : 0.03	b : 0.01	g : 0.01	d : 0.01	
= : 0.72	i : 0.03	] : 0.03	c : 0.03	4 : 0.03	b : 0.01	3 : 0.01	g : 0.01	d : 0.01	e : 0.01	2 : 0.01	
= : 0.66	] : 0.03	i : 0.03	g : 0.03	b : 0.03	c : 0.03	4 : 0.03	a : 0.01	d : 0.01	e : 0.01	2 : 0.01	h : 0.01	
= : 0.60	c : 0.07	d : 0.05	i : 0.03	g : 0.03	b : 0.03	2 : 0.01	3 : 0.01	] : 0.01	4 : 0.01	e : 0.01	a : 0.01	h : 0.01	
= : 0.35	] : 0.13	d : 0.09	c : 0.05	: : 0.03	3 : 0.03	i : 0.03	g : 0.03	e : 0.03	2 : 0.01	" : 0.01	D : 0.01	9 : 0.01	4 : 0.01	0 : 0.01	5 : 0.01	h : 0.01	
= : 0.25	c : 0.09	b : 0.09	d : 0.09	: : 0.05	e : 0.05	3 : 0.03	i : 0.03	g : 0.03	5 : 0.03	" : 0.01	] : 0.01	a : 0.01	D : 0.01	7 : 0.01	9 : 0.01	4 : 0.01	0 : 0.01	h : 0.01	

#score	1037.914577753902
#seq	51
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_UTR_m3_run1.txt

#BEAR
ffffff[bb[ddddlllddddbb]ffffff	chr11:2152116-2152321(-)$1	205	47	77	14.9015
ggg[eeeee[ddddllldddd22eeeee]g	chr11:2152419-2152622(-)$1	203	117	147	18.2881
hhhhh[eeeeeccclllccc333eeeee]h	chr14:32546367-32546660(+)$1	293	184	214	12.5340
[a!!eeeee[cccmmmmccc]eeeee333a	chr14:54421088-54421339(-)$1	251	30	60	10.3907
dddd"""a[ddddmmmmdddda22ddddae	chr11:2152281-2152490(-)$1	209	118	148	10.5488
ffffff[bb[ddddlllddddbb]ffffff	chr11:2152111-2152316(-)$1	205	42	72	14.9015
[ggggggg[ccc[allla]ccc]ggggggg	chr12:123997760-123998017(-)$1	257	183	213	11.3895
!!ccc[ddddddddllldddd]dddd]ccc	chr9:19380013-19380256(-)$1	243	47	77	13.5205
ggg[eeeee[ddddllldddd22eeeee]g	chr11:2152426-2152628(-)$1	202	123	153	18.2881
ddd[dddd!!ddddllldddd4444dddd]	chr8:144989655-144989913(-)$1	258	15	45	14.5809
hhhhh[eeeeeccclllccc333eeeee]h	chr14:32546485-32546788(+)$1	303	66	96	12.5340
eeeeebb!!eeeeellleeeee4444bb]e	chr17:72768099-72768410(-)$1	311	91	121	9.6043
ffffff[bb[ddddlllddddbb]ffffff	chr11:2152092-2152296(-)$1	204	22	52	14.9015
a####ccc[ddddnnnnnddddccc22a]f	chr8:27529230-27529502(+)$1	272	202	232	9.9234
dddd[dddd[ddddllldddddddddddd]	chr10:102762086-102762385(+)$1	299	210	240	13.0792
ffffff[bb[ddddlllddddbb]ffffff	chr11:2152128-2152335(-)$1	207	61	91	14.9015
====[a!!ddddnnnnndddd22a]=====	chr7:72855374-72855646(-)$1	272	140	170	11.9524
ffffff[bb[ddddlllddddbb]ffffff	chr11:2152137-2152349(-)$1	212	75	105	14.9015
ggg[eeeee[ddddllldddd22eeeee]g	chr11:2152422-2152626(-)$1	204	121	151	18.2881
ggg[eeeee[ddddllldddd22eeeee]g	chr11:2152415-2152619(-)$1	204	114	144	18.2881
dd[dddd"""ddddmmmmdddd]ddddddd	chr11:62609026-62609233(-)$1	207	65	95	10.3804
dddd"""a[ddddmmmmdddda22ddddae	chr11:2152290-2152498(-)$1	208	126	156	10.5488
ccc[ccc[ddddnnnnndddd]ccc]ccc]	chr1:249151582-249151903(-)$1	321	279	309	10.4296
eee[dddd!!ddddnnnnndddd4444ddd	chr16:4737325-4737569(+)$1	244	73	103	10.1203
ffffff[bb[ddddlllddddbb]ffffff	chr11:2152121-2152328(-)$1	207	54	84	14.9015
ggg[eeeee[ddddllldddd22eeeee]g	chr11:2152361-2152570(-)$1	209	65	95	18.2881
gg!!bb[cccddddmmmmdddd]ccc]bb3	chr12:123998009-123998354(-)$1	345	284	314	10.4287
ggg[eeeee[ddddllldddd22eeeee]g	chr11:2152330-2152534(-)$1	204	29	59	18.2881
b[ggggggg[ddddllldddd]ggggggg3	chr19:54970868-54971104(+)$1	236	15	45	14.8330
$$$$dddd!!ddddllldddddddd333bb	chr11:61634406-61634655(+)$1	249	98	128	12.5191
%a[===========lll===========]a	chr20:57467366-57467606(+)$1	240	151	181	10.9255
ggg[eeeee[ddddllldddd22eeeee]g	chr11:2152326-2152530(-)$1	204	25	55	18.2881
[a"""ddddbbccclllccc333bb]dddd	chr7:77166709-77166969(+)$1	260	159	189	10.1604
ggg[eeeee[ddddllldddd22eeeee]g	chr11:2152334-2152542(-)$1	208	37	67	18.2881
[a[eeeee####ccclllccc22eeeee]a	chr2:85770076-85770340(+)$1	264	77	107	12.0808
ffffff[bb[ddddlllddddbb]ffffff	chr11:2152096-2152311(-)$1	215	37	67	14.9015
ggg[eeeee[ddddllldddd22eeeee]g	chr11:2152302-2152526(-)$1	224	21	51	18.2881
%%%%eeeee[ddddlllddddeeeeeffff	chr17:54968746-54969011(-)$1	265	204	234	13.0512
!ffffff"""cccmmmmccc333ffffff2	chr21:46915808-46916071(+)$1	263	45	75	10.0380
[ggggggg!!aaooooooa]a22ggggggg	chr17:62501970-62502230(-)$1	260	108	138	10.3516
ggg[eeeee[ddddllldddd22eeeee]g	chr11:2152428-2152630(-)$1	202	125	155	18.2881
ffffff[bb[ddddlllddddbb]ffffff	chr11:2152083-2152292(-)$1	209	18	48	14.9015
ffffff[bb[ddddlllddddbb]ffffff	chr11:2152073-2152283(-)$1	210	9	39	14.9015
ggg[eeeee[ddddllldddd22eeeee]g	chr11:2152430-2152632(-)$1	202	127	157	18.2881
ggg[eeeee[ddddllldddd22eeeee]g	chr11:2152450-2152656(-)$1	206	151	181	18.2881

#otherMatches

#Seq PSSM
CUUACUGUGUGUUGGCCCAGCCAGAGUGAG	chr11:2152116-2152321(-)$1	205	47	77	14.9015
CUGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152419-2152622(-)$1	203	117	147	18.2881
GGCGGGAGCGGUCCCCAGGAAUgucgcugc	chr14:32546367-32546660(+)$1	293	184	214	12.5340
GCGACUCUGCUGCUGGUGCAACGGAGGAAG	chr14:54421088-54421339(-)$1	251	30	60	10.3907
UGCCCUUGUGAGGCUGGCCUCCUUGGCGCC	chr11:2152281-2152490(-)$1	209	118	148	10.5488
CUUACUGUGUGUUGGCCCAGCCAGAGUGAG	chr11:2152111-2152316(-)$1	205	42	72	14.9015
GAGGAGUUUGUGGCUUUGGCACUGACUUCU	chr12:123997760-123998017(-)$1	257	183	213	11.3895
GUUCAGCUGCUUCAAGAUGAAGGUAGGUGA	chr9:19380013-19380256(-)$1	243	47	77	13.5205
CUGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152426-2152628(-)$1	202	123	153	18.2881
UCUACCCAGAGAAGCCCCUUCCCCAUGGGA	chr8:144989655-144989913(-)$1	258	15	45	14.5809
GGCGGGAGCGGUCCCCAGGAAUgucgcugc	chr14:32546485-32546788(+)$1	303	66	96	12.5340
GGCCCCAGGUGAACUUUGUUCAGGUGUGAG	chr17:72768099-72768410(-)$1	311	91	121	9.6043
CUUACUGUGUGUUGGCCCAGCCAGAGUGAG	chr11:2152092-2152296(-)$1	204	22	52	14.9015
GACUGAGCCUGCCAGGGAGGCAGCUACCUC	chr8:27529230-27529502(+)$1	272	202	232	9.9234
UGGCCAUUGUGCAGACUCUGCCAGUGCCAC	chr10:102762086-102762385(+)$1	299	210	240	13.0792
CUUACUGUGUGUUGGCCCAGCCAGAGUGAG	chr11:2152128-2152335(-)$1	207	61	91	14.9015
CCCAUCCACUCUCCUCUAGAGCAGUUGGGU	chr7:72855374-72855646(-)$1	272	140	170	11.9524
CUUACUGUGUGUUGGCCCAGCCAGAGUGAG	chr11:2152137-2152349(-)$1	212	75	105	14.9015
CUGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152422-2152626(-)$1	204	121	151	18.2881
CUGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152415-2152619(-)$1	204	114	144	18.2881
agauggaauaggagcuugcuccguccacuc	chr11:62609026-62609233(-)$1	207	65	95	10.3804
UGCCCUUGUGAGGCUGGCCUCCUUGGCGCC	chr11:2152290-2152498(-)$1	208	126	156	10.5488
GCCUGGUGCCCGGGCUUCGGGGGCCUGGCG	chr1:249151582-249151903(-)$1	321	279	309	10.4296
gcuugggcgugguagcuugugccugugguc	chr16:4737325-4737569(+)$1	244	73	103	10.1203
CUUACUGUGUGUUGGCCCAGCCAGAGUGAG	chr11:2152121-2152328(-)$1	207	54	84	14.9015
CUGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152361-2152570(-)$1	209	65	95	18.2881
GUCAGGCGCCAGGCUUCUGCCUCGGUCUCA	chr12:123998009-123998354(-)$1	345	284	314	10.4287
CUGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152330-2152534(-)$1	204	29	59	18.2881
GAGACUCAUUCUGGAAUCUAGUGUGGGUCA	chr19:54970868-54971104(+)$1	236	15	45	14.8330
GGGAGGGAAGUCCUGGGAGGAUCCUGAGCU	chr11:61634406-61634655(+)$1	249	98	128	12.5191
GUGGGGGGGCUGGUGACAUCAGCCCCUCGG	chr20:57467366-57467606(+)$1	240	151	181	10.9255
CUGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152326-2152530(-)$1	204	25	55	18.2881
GCAAGUGGAGAUCCUGAGGAAAUUCAUCCA	chr7:77166709-77166969(+)$1	260	159	189	10.1604
CUGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152334-2152542(-)$1	208	37	67	18.2881
UCAGGUAAAGAUGGUAAAGCCUGUUGCUAG	chr2:85770076-85770340(+)$1	264	77	107	12.0808
CUUACUGUGUGUUGGCCCAGCCAGAGUGAG	chr11:2152096-2152311(-)$1	215	37	67	14.9015
CUGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152302-2152526(-)$1	224	21	51	18.2881
AAUCUCCAGGCUGCUGGGCAGCUGGGCAGA	chr17:54968746-54969011(-)$1	265	204	234	13.0512
AUGUAUACUcaugcacacauacauauacac	chr21:46915808-46916071(+)$1	263	45	75	10.0380
CGGGGGCUUUGCGGCUUGGACUUGGCCUUU	chr17:62501970-62502230(-)$1	260	108	138	10.3516
CUGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152428-2152630(-)$1	202	125	155	18.2881
CUUACUGUGUGUUGGCCCAGCCAGAGUGAG	chr11:2152083-2152292(-)$1	209	18	48	14.9015
CUUACUGUGUGUUGGCCCAGCCAGAGUGAG	chr11:2152073-2152283(-)$1	210	9	39	14.9015
CUGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152430-2152632(-)$1	202	127	157	18.2881
CUGUGCCCUGCCUCUCAGAGGAGGGGGCUC	chr11:2152450-2152656(-)$1	206	151	181	18.2881

#DB
((((((.((.((((...)))))).))))))	chr11:2152116-2152321(-)$1	1	47	77	14.9015
(((.(((((.((((...))))..))))).)	chr11:2152419-2152622(-)$1	1	117	147	18.2881
(((((.((((((((...)))...))))).)	chr14:32546367-32546660(+)$1	1	184	214	12.5340
.(..(((((.(((....))).)))))...)	chr14:54421088-54421339(-)$1	1	30	60	10.3907
((((...(.((((....)))))..))))))	chr11:2152281-2152490(-)$1	1	118	148	10.5488
((((((.((.((((...)))))).))))))	chr11:2152111-2152316(-)$1	1	42	72	14.9015
.(((((((.(((.(...).))).)))))))	chr12:123997760-123998017(-)$1	1	183	213	11.3895
..(((.((((((((...)))).)))).)))	chr9:19380013-19380256(-)$1	1	47	77	13.5205
(((.(((((.((((...))))..))))).)	chr11:2152426-2152628(-)$1	1	123	153	18.2881
(((.((((..((((...))))....)))).	chr8:144989655-144989913(-)$1	1	15	45	14.5809
(((((.((((((((...)))...))))).)	chr14:32546485-32546788(+)$1	1	66	96	12.5340
(((((((..(((((...)))))....)).)	chr17:72768099-72768410(-)$1	1	91	121	9.6043
((((((.((.((((...)))))).))))))	chr11:2152092-2152296(-)$1	1	22	52	14.9015
(....(((.((((.....)))))))..).)	chr8:27529230-27529502(+)$1	1	202	232	9.9234
((((.((((.((((...)))))))))))).	chr10:102762086-102762385(+)$1	1	210	240	13.0792
((((((.((.((((...)))))).))))))	chr11:2152128-2152335(-)$1	1	61	91	14.9015
((((.(..((((.....))))..).)))))	chr7:72855374-72855646(-)$1	1	140	170	11.9524
((((((.((.((((...)))))).))))))	chr11:2152137-2152349(-)$1	1	75	105	14.9015
(((.(((((.((((...))))..))))).)	chr11:2152422-2152626(-)$1	1	121	151	18.2881
(((.(((((.((((...))))..))))).)	chr11:2152415-2152619(-)$1	1	114	144	18.2881
((.((((...((((....)))).)))))))	chr11:62609026-62609233(-)$1	1	65	95	10.3804
((((...(.((((....)))))..))))))	chr11:2152290-2152498(-)$1	1	126	156	10.5488
(((.(((.((((.....)))).))).))).	chr1:249151582-249151903(-)$1	1	279	309	10.4296
(((.((((..((((.....))))....)))	chr16:4737325-4737569(+)$1	1	73	103	10.1203
((((((.((.((((...)))))).))))))	chr11:2152121-2152328(-)$1	1	54	84	14.9015
(((.(((((.((((...))))..))))).)	chr11:2152361-2152570(-)$1	1	65	95	18.2881
((..((.(((((((....)))).))).)).	chr12:123998009-123998354(-)$1	1	284	314	10.4287
(((.(((((.((((...))))..))))).)	chr11:2152330-2152534(-)$1	1	29	59	18.2881
(.(((((((.((((...)))).))))))).	chr19:54970868-54971104(+)$1	1	15	45	14.8330
....((((..((((...))))))))...))	chr11:61634406-61634655(+)$1	1	98	128	12.5191
.(.(((((((((((...))))))))))).)	chr20:57467366-57467606(+)$1	1	151	181	10.9255
(((.(((((.((((...))))..))))).)	chr11:2152326-2152530(-)$1	1	25	55	18.2881
.(...(((((((((...)))...)).))))	chr7:77166709-77166969(+)$1	1	159	189	10.1604
(((.(((((.((((...))))..))))).)	chr11:2152334-2152542(-)$1	1	37	67	18.2881
.(.(((((....(((...)))..))))).)	chr2:85770076-85770340(+)$1	1	77	107	12.0808
((((((.((.((((...)))))).))))))	chr11:2152096-2152311(-)$1	1	37	67	14.9015
(((.(((((.((((...))))..))))).)	chr11:2152302-2152526(-)$1	1	21	51	18.2881
....(((((.((((...)))))))))))))	chr17:54968746-54969011(-)$1	1	204	234	13.0512
.((((((...(((....)))...)))))).	chr21:46915808-46916071(+)$1	1	45	75	10.0380
.(((((((..((......).)..)))))))	chr17:62501970-62502230(-)$1	1	108	138	10.3516
(((.(((((.((((...))))..))))).)	chr11:2152428-2152630(-)$1	1	125	155	18.2881
((((((.((.((((...)))))).))))))	chr11:2152083-2152292(-)$1	1	18	48	14.9015
((((((.((.((((...)))))).))))))	chr11:2152073-2152283(-)$1	1	9	39	14.9015
(((.(((((.((((...))))..))))).)	chr11:2152430-2152632(-)$1	1	127	157	18.2881
(((.(((((.((((...))))..))))).)	chr11:2152450-2152656(-)$1	1	151	181	18.2881

#PSSM
g : 0.28	f : 0.20	[ : 0.11	d : 0.11	h : 0.04	! : 0.04	e : 0.04	% : 0.04	a : 0.02	= : 0.02	c : 0.02	b : 0.02	$ : 0.02	
g : 0.33	f : 0.22	d : 0.11	a : 0.08	h : 0.04	e : 0.04	! : 0.02	# : 0.02	= : 0.02	c : 0.02	[ : 0.02	$ : 0.02	% : 0.02	
g : 0.33	f : 0.22	d : 0.08	[ : 0.06	h : 0.04	! : 0.04	c : 0.04	e : 0.04	# : 0.02	= : 0.02	$ : 0.02	" : 0.02	% : 0.02	
[ : 0.33	f : 0.22	d : 0.08	g : 0.06	h : 0.04	! : 0.04	e : 0.04	= : 0.04	c : 0.02	# : 0.02	$ : 0.02	" : 0.02	% : 0.02	
e : 0.35	f : 0.22	d : 0.08	" : 0.06	g : 0.06	h : 0.04	c : 0.04	[ : 0.04	# : 0.02	b : 0.02	= : 0.02	
e : 0.33	f : 0.22	d : 0.13	[ : 0.06	g : 0.06	" : 0.04	b : 0.04	c : 0.04	a : 0.02	= : 0.02	
e : 0.37	[ : 0.22	d : 0.15	g : 0.06	" : 0.04	c : 0.04	b : 0.02	! : 0.02	= : 0.02	f : 0.02	
e : 0.37	b : 0.20	d : 0.13	g : 0.06	a : 0.04	! : 0.04	c : 0.04	" : 0.04	[ : 0.02	= : 0.02	
e : 0.35	b : 0.20	d : 0.11	! : 0.11	[ : 0.08	" : 0.04	c : 0.02	g : 0.02	= : 0.02	# : 0.02	
[ : 0.55	d : 0.13	! : 0.08	e : 0.06	c : 0.04	" : 0.04	= : 0.02	b : 0.02	# : 0.02	
d : 0.77	e : 0.06	c : 0.06	= : 0.02	b : 0.02	# : 0.02	a : 0.02	
d : 0.77	c : 0.13	e : 0.02	= : 0.02	# : 0.02	a : 0.02	
d : 0.73	c : 0.13	n : 0.04	[ : 0.02	e : 0.02	= : 0.02	o : 0.02	
d : 0.66	c : 0.08	m : 0.08	n : 0.06	a : 0.02	e : 0.02	= : 0.02	o : 0.02	
l : 0.73	m : 0.13	n : 0.08	c : 0.02	o : 0.02	
l : 0.75	m : 0.13	n : 0.08	o : 0.02	
l : 0.75	m : 0.13	n : 0.08	o : 0.02	
d : 0.68	c : 0.11	n : 0.04	m : 0.04	a : 0.02	e : 0.02	= : 0.02	l : 0.02	o : 0.02	
d : 0.75	c : 0.13	] : 0.02	e : 0.02	n : 0.02	= : 0.02	a : 0.02	
d : 0.77	c : 0.15	e : 0.02	= : 0.02	] : 0.02	
d : 0.77	3 : 0.08	c : 0.04	] : 0.02	e : 0.02	= : 0.02	a : 0.02	
2 : 0.33	b : 0.20	d : 0.13	3 : 0.08	e : 0.06	] : 0.06	a : 0.04	c : 0.02	4 : 0.02	= : 0.02	
2 : 0.37	b : 0.20	3 : 0.08	d : 0.08	] : 0.06	e : 0.04	4 : 0.04	c : 0.04	g : 0.02	= : 0.02	
e : 0.37	] : 0.20	d : 0.08	g : 0.06	4 : 0.06	c : 0.06	2 : 0.04	a : 0.02	= : 0.02	b : 0.02	f : 0.02	
e : 0.37	f : 0.22	d : 0.13	g : 0.06	4 : 0.06	c : 0.06	] : 0.02	= : 0.02	b : 0.02	
e : 0.37	f : 0.22	d : 0.13	g : 0.06	4 : 0.04	= : 0.04	] : 0.04	2 : 0.02	c : 0.02	3 : 0.02	
e : 0.33	f : 0.24	d : 0.13	g : 0.06	3 : 0.04	] : 0.04	= : 0.04	b : 0.02	2 : 0.02	c : 0.02	4 : 0.02	
e : 0.33	f : 0.24	d : 0.15	g : 0.06	3 : 0.04	c : 0.04	b : 0.04	= : 0.04	a : 0.02	
] : 0.39	f : 0.24	d : 0.11	g : 0.06	a : 0.04	c : 0.04	b : 0.04	3 : 0.02	= : 0.02	
g : 0.31	f : 0.24	a : 0.06	e : 0.06	] : 0.06	d : 0.06	h : 0.04	3 : 0.04	c : 0.02	= : 0.02	b : 0.02	2 : 0.02	

#score	629.4972459802311
#seq	45
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF844VZT_HNRNPU_UTR_m3_run1.txt

#BEAR
b!!eeeee####ccc####ccclllcccccc22eeeee22	chr14:73924306-73924596(-)$1	290	135	175	16.9462
eeee%%%%%%gggggggqqqqqqqqgggggggeeeee]bb	chr19:41770838-41771107(+)$1	269	164	204	16.8768
ee(((((((((ccc[bbqqqqqqqqbb]ccc22eeeee33	chr3:15091848-15092097(-)$1	249	21	61	21.9457
eeeee[eeeee!!arrrrrrrrra22eeeee22eeeeecc	chr3:100428749-100429007(+)$1	258	40	80	16.6552
a22ccca[eeeee!!ddddqqqqqqqqdddd22eeeee]a	chr4:2935989-2936300(-)$1	311	255	295	17.3566

#otherMatches

#Seq PSSM
GAGCUCCCUGCGCCCCCAUAGCUGAGCUGGGAUGGGAGAC	chr14:73924306-73924596(-)$1	290	135	175	16.9462
CGAAGAGAGUCGGAAGAACAAGAGGUUUUCCGUUUGGGUU	chr19:41770838-41771107(+)$1	269	164	204	16.8768
UGAUACCACCUGCCUGGGCGUUCUACUUGGCUGCAAGGGC	chr3:15091848-15092097(-)$1	249	21	61	21.9457
CGCGGAGGGGGAGGGGAGAGAGGCAACCCCUGGCUGCGGU	chr3:100428749-100429007(+)$1	258	40	80	16.6552
ugggguugggaucgggaucgggaucgggaucgggauccgg	chr4:2935989-2936300(-)$1	311	255	295	17.3566

#DB
(..(((((....(((....(((...))))))..)))))..	chr14:73924306-73924596(-)$1	1	135	175	16.9462
((((......(((((((........)))))))))))).))	chr19:41770838-41771107(+)$1	1	164	204	16.8768
((.........(((.((........)).)))..)))))..	chr3:15091848-15092097(-)$1	1	21	61	21.9457
(((((.(((((..(.........)..)))))..)))))((	chr3:100428749-100429007(+)$1	1	40	80	16.6552
)..)))(.(((((..((((........))))..))))).)	chr4:2935989-2936300(-)$1	1	255	295	17.3566

#PSSM
e : 0.60	b : 0.20	a : 0.20	
e : 0.60	! : 0.20	2 : 0.20	
e : 0.40	! : 0.20	( : 0.20	2 : 0.20	
e : 0.60	( : 0.20	c : 0.20	
e : 0.40	% : 0.20	( : 0.20	c : 0.20	
e : 0.20	% : 0.20	( : 0.20	[ : 0.20	c : 0.20	
e : 0.40	% : 0.20	( : 0.20	a : 0.20	
e : 0.40	% : 0.20	( : 0.20	[ : 0.20	
e : 0.40	# : 0.20	% : 0.20	( : 0.20	
e : 0.40	# : 0.20	% : 0.20	( : 0.20	
e : 0.40	# : 0.20	g : 0.20	( : 0.20	
# : 0.20	g : 0.20	c : 0.20	! : 0.20	e : 0.20	
c : 0.40	g : 0.20	! : 0.20	e : 0.20	
c : 0.40	g : 0.20	a : 0.20	! : 0.20	
c : 0.20	g : 0.20	[ : 0.20	r : 0.20	! : 0.20	
# : 0.20	g : 0.20	b : 0.20	r : 0.20	d : 0.20	
# : 0.20	g : 0.20	b : 0.20	r : 0.20	d : 0.20	
q : 0.40	# : 0.20	r : 0.20	d : 0.20	
q : 0.40	# : 0.20	r : 0.20	d : 0.20	
q : 0.60	c : 0.20	r : 0.20	
q : 0.60	c : 0.20	r : 0.20	
q : 0.60	c : 0.20	r : 0.20	
q : 0.60	l : 0.20	r : 0.20	
q : 0.60	l : 0.20	a : 0.20	
q : 0.60	l : 0.20	2 : 0.20	
c : 0.20	g : 0.20	b : 0.20	2 : 0.20	q : 0.20	
c : 0.20	g : 0.20	b : 0.20	e : 0.20	q : 0.20	
c : 0.20	g : 0.20	] : 0.20	e : 0.20	d : 0.20	
c : 0.40	g : 0.20	e : 0.20	d : 0.20	
c : 0.40	g : 0.20	e : 0.20	d : 0.20	
c : 0.40	g : 0.20	e : 0.20	d : 0.20	
2 : 0.80	g : 0.20	
2 : 0.80	e : 0.20	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 0.80	] : 0.20	
2 : 0.20	b : 0.20	3 : 0.20	c : 0.20	] : 0.20	
2 : 0.20	b : 0.20	3 : 0.20	c : 0.20	a : 0.20	

#score	89.78074325792001
#seq	5
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_transcript_m3_run2.txt

#BEAR
fffffffftttttttttttffffff	chr16:67213040-67213347(-)$1	307	82	107	18.6618
$$$$cccxxxxxxxxxxxxxxxccc	chr6:41556367-41556625(+)$1	258	220	245	16.0490
eeeee[cccssssssssssccceee	chr16:68267696-68267947(-)$1	251	186	211	16.5741
ddd!!bbwwwwwwwwwwwwwwbb22	chr1:40777658-40777913(-)$1	255	210	235	19.0031
Gddddccctttttttttttccc444	chr20:442638-442910(-)$1	272	51	76	20.3133
eeeee[cccrrrrrrrrrccc333e	chr19:808684-808949(+)$1	265	179	204	12.5652
cc[eeeeettttttttttteeeeec	chr15:34655969-34656238(-)$1	269	64	89	20.7946
hhhhhhhhwwwwwwwwwwwwwwhhh	chr12:132392478-132392706(+)$1	228	160	185	17.5542
hcccddddtttttttttttdddd]c	chr1:889568-889831(-)$1	263	124	149	20.3468
++++cccuuuuuuuuuuuuccc>>>	chr3:48481895-48482162(+)$1	267	81	106	18.2699
ee[bbyyyyyyyyyyyyyyyybb]e	chr20:34292404-34292652(-)$1	248	114	139	17.9126
eee[ddddtttttttttttdddd]e	chr3:42845683-42845941(-)$1	258	127	152	21.0171
!!bb[cccuuuuuuuuuuuuccc]b	chr9:131750194-131750463(+)$1	269	216	241	20.9076
========vvvvvvvvvvvvv====	chr1:19203500-19203759(-)$1	259	13	38	19.5399
!eeeeewwwwwwwwwwwwwweeeee	chr10:105155823-105156185(-)$1	362	92	117	21.0033
cc[dddduuuuuuuuuuuudddd]c	chr19:59067498-59067755(-)$1	257	105	130	21.2837
ddd!!ccctttttttttttccc22d	chr19:49497136-49497406(+)$1	270	193	218	20.7384
eee[cccuuuuuuuuuuuuccc333	chr19:5894800-5895076(-)$1	276	233	258	22.0231
Gffffffuuuuuuuuuuuuffffff	chr16:89940476-89940724(+)$1	248	172	197	19.0878
hhhhhhhhwwwwwwwwwwwwwwhhh	chr16:71957259-71957579(+)$1	320	170	195	17.5542
:gggggggtttttttttttgggggg	chr4:1803945-1804221(+)$1	276	111	136	19.3081
####bbvvvvvvvvvvvvvbb4444	chrX:153628883-153629142(+)$1	259	145	170	18.6736
c####ddddssssssssssdddd33	chr1:173835176-173835449(-)$1	273	140	165	15.5127
::eeeeeuuuuuuuuuuuueeeeef	chr10:88827685-88827942(-)$1	257	158	183	19.5202
ddd[cccxxxxxxxxxxxxxxxccc	chr8:9629528-9629761(+)$1	233	137	162	16.8745
ccc!!cccssssssssssccc22cc	chr20:34218875-34219101(-)$1	226	46	71	15.7900
!eeeeewwwwwwwwwwwwwweeeee	chr22:37891336-37891589(-)$1	253	152	177	21.0033
ccc[ddddssssssssssddddccc	chr12:56742134-56742412(-)$1	278	98	123	15.5095
"gggggggtttttttttttgggggg	chr6:5260638-5260949(-)$1	311	29	54	20.1207
d::eeeeeuuuuuuuuuuuueeeee	chr20:32661344-32661602(+)$1	258	45	70	19.2785
$$$$eeeeesssssssssseeeee5	chr17:80186991-80187284(+)$1	293	61	86	14.2398
c!!eeeeeuuuuuuuuuuuueeeee	chr8:23003020-23003316(-)$1	296	28	53	21.5125
dddd[ddddssssssssssdddd]d	chr4:187201400-187201761(+)$1	361	226	251	15.3564
ccc[axxxxxxxxxxxxxxxa]ccc	chr21:44527259-44527509(-)$1	250	150	175	16.8086
cc[cccwwwwwwwwwwwwwwccc]c	chr7:73038250-73038487(-)$1	237	34	59	20.7794
gggggg[atttttttttttaggggg	chr5:176523164-176523421(+)$1	257	148	173	20.7051
eeeee!!assssssssssa22eeee	chr10:18948629-18948897(+)$1	268	49	74	16.1473
:ddddwwwwwwwwwwwwwwdddd:b	chr20:17662002-17662252(-)$1	250	94	119	17.4673
gggggggvvvvvvvvvvvvvggggg	chr5:176980987-176981296(-)$1	309	74	99	19.9557
fffeeeeeuuuuuuuuuuuueeeee	chr9:130213317-130213586(-)$1	269	82	107	20.9608
eeeyyyyyyyyyyyyyyyyeeeee]	chr20:3782184-3782487(+)$1	303	243	268	18.0753
!ddddwwwwwwwwwwwwwwdddd22	chr17:40629735-40630004(+)$1	269	96	121	19.4468
=====[bbssssssssssbb]====	chr9:139720744-139720999(+)$1	255	42	67	14.9512
hhhhh[cccssssssssssccc]hh	chr18:47811880-47812154(-)$1	274	87	112	15.0583
ff!!dddduuuuuuuuuuuudddd5	chr5:1083616-1083873(-)$1	257	179	204	20.0846
ddd[ddddtttttttttttdddd]d	chr19:7679916-7680166(+)$1	250	145	170	20.5684
eeee[ccctttttttttttccc]ee	chr19:35491448-35491749(+)$1	301	68	93	21.2057
ccc[eeeeerrrrrrrrreeeee]c	chr8:145619174-145619418(-)$1	244	20	45	12.0123
eee[ddddtttttttttttdddd]e	chr17:37856482-37856761(+)$1	279	63	88	21.0171
:eeeeewwwwwwwwwwwwwweeeee	chr15:75653079-75653352(-)$1	273	66	91	20.0932
:eeeeewwwwwwwwwwwwwweeeee	chr16:30077523-30077758(+)$1	235	185	210	20.0932
[eeeeewwwwwwwwwwwwwweeeee	chr2:27558742-27559055(-)$1	313	213	238	20.9411
eee[ccc[arrrrrrrrra]ccc]e	chr22:29956961-29957270(-)$1	309	139	164	13.1491
eeeee[cccssssssssssccc]ee	chr17:73178324-73178615(-)$1	291	195	220	16.5070

#otherMatches

#Seq PSSM
AGGAGGGGCCCCAAUAACUCCCCUU	chr16:67213040-67213347(-)$1	307	82	107	18.6618
AGCCACCAUCUUAUGCUUUCUAGGU	chr6:41556367-41556625(+)$1	258	220	245	16.0490
UUCUCCUUCUAUGACCUCCGAAGAG	chr16:68267696-68267947(-)$1	251	186	211	16.5741
GCCUCCUGCCUUCUAUCUCCAAGCU	chr1:40777658-40777913(-)$1	255	210	235	19.0031
cgggcggCGAGAGGAACAGGCUGAG	chr20:442638-442910(-)$1	272	51	76	20.3133
CAGGUCGGGCACCUCUUACCCCAAA	chr19:808684-808949(+)$1	265	179	204	12.5652
GAAGUUCCAGAUUUGGGGAGGGACU	chr15:34655969-34656238(-)$1	269	64	89	20.7946
GAGCCGGCAGGACUGCUCAAACGCC	chr12:132392478-132392706(+)$1	228	160	185	17.5542
CAACCCUGGGCAGGGCAGACAGGAG	chr1:889568-889831(-)$1	263	124	149	20.3468
AAAAGAGGAGCAGAAGAAACUCGAG	chr3:48481895-48482162(+)$1	267	81	106	18.2699
GAUGCUAAACCCAACAUGUCUGUUU	chr20:34292404-34292652(-)$1	248	114	139	17.9126
CGUGUCUCGAAUGAGGGAGGAGAGG	chr3:42845683-42845941(-)$1	258	127	152	21.0171
CUGAAACCUCCUUCUAAUGUGGUGU	chr9:131750194-131750463(+)$1	269	216	241	20.9076
GCAGAGGAUUUUGGGACCUUCUUCU	chr1:19203500-19203759(-)$1	259	13	38	19.5399
AGGAGCAACUCGAGUUCUUAGCUUU	chr10:105155823-105156185(-)$1	362	92	117	21.0033
AUUGGCCUUCUGUCCCUCUGGCCUG	chr19:59067498-59067755(-)$1	257	105	130	21.2837
ccagaucugggggagaaggggacau	chr19:49497136-49497406(+)$1	270	193	218	20.7384
CGCCGCCUGCGUGUACUUUGGCAUA	chr19:5894800-5895076(-)$1	276	233	258	22.0231
CGUGGGCGGGAUUAAAUGGGCCUGC	chr16:89940476-89940724(+)$1	248	172	197	19.0878
CACUACCCUGGAAAUGUGGAGUGGG	chr16:71957259-71957579(+)$1	320	170	195	17.5542
AGGAGGGCAGUGUGGCCAAGCCCUC	chr4:1803945-1804221(+)$1	276	111	136	19.3081
CCAUUGCUCCUUAGAUCCACAUCUC	chrX:153628883-153629142(+)$1	259	145	170	18.6736
UGAAACUGUAUCCAAGUAAGCAGGU	chr1:173835176-173835449(-)$1	273	140	165	15.5127
UUGCUGUCUACAAGAAUUAACAGUU	chr10:88827685-88827942(-)$1	257	158	183	19.5202
uagaccaggcaagaauuauuaaugg	chr8:9629528-9629761(+)$1	233	137	162	16.8745
GCUGUCAGAUCAACUUCACUGUAAG	chr20:34218875-34219101(-)$1	226	46	71	15.7900
AGGAAGACACUCCCUCCCUCCUUCC	chr22:37891336-37891589(-)$1	253	152	177	21.0033
GGGUAAGGCCUUGGUCACCCUUCCC	chr12:56742134-56742412(-)$1	278	98	123	15.5095
UGCUGAGAGAGAGCAAGCGUUUCAG	chr6:5260638-5260949(-)$1	311	29	54	20.1207
CUAAGCCUGACAGACCCAAGGGGCU	chr20:32661344-32661602(+)$1	258	45	70	19.2785
CCUCGGGGUCCGCGCUCUCACCCCC	chr17:80186991-80187284(+)$1	293	61	86	14.2398
AUCACUACCUUAUCAUCAUAGUGGU	chr8:23003020-23003316(-)$1	296	28	53	21.5125
GGGGCAAGUGUUACUUAAAGCUUUC	chr4:187201400-187201761(+)$1	361	226	251	15.3564
GGAGCGGGCAGAAUGAAUGGGGUCU	chr21:44527259-44527509(-)$1	250	150	175	16.8086
CUGGGGCCCUCAACACCCCACCCGA	chr7:73038250-73038487(-)$1	237	34	59	20.7794
CGCCCGAGGCCUUGUUUGACCGGGU	chr5:176523164-176523421(+)$1	257	148	173	20.7051
CCGGAGACAGGGGACAGAGCGUUCG	chr10:18948629-18948897(+)$1	268	49	74	16.1473
AGGGCGGGAUUGAAUgggggcccac	chr20:17662002-17662252(-)$1	250	94	119	17.4673
GCUCGGGCGCUUUCACCUUCCCCGA	chr5:176980987-176981296(-)$1	309	74	99	19.9557
GCGCGUGCAAAGCUUUCCCCGUAUG	chr9:130213317-130213586(-)$1	269	82	107	20.9608
CUUGGAAAAGGAAGAGGAAAAGGUG	chr20:3782184-3782487(+)$1	303	243	268	18.0753
ACUGGGGAUUCACUUGCUACCAGGA	chr17:40629735-40630004(+)$1	269	96	121	19.4468
GUUCCUCUAAGUCCUCAGGGUGGAG	chr9:139720744-139720999(+)$1	255	42	67	14.9512
CAUGCAUGGUUAGUUAAGUCUAGGC	chr18:47811880-47812154(-)$1	274	87	112	15.0583
CCCCUGGCAGAGCCAUAGAAGCCAA	chr5:1083616-1083873(-)$1	257	179	204	20.0846
UCCCCAGGAUGAAGACAAGCCUGAG	chr19:7679916-7680166(+)$1	250	145	170	20.5684
CUCUGGCCGGGGCGAUCGGGGUGGG	chr19:35491448-35491749(+)$1	301	68	93	21.2057
GACCCUGGGCCUCUGCUCCCCAGUG	chr8:145619174-145619418(-)$1	244	20	45	12.0123
GGAGCCGCGAGCACCCAAGGUGGGU	chr17:37856482-37856761(+)$1	279	63	88	21.0171
UCCUGUCCCAAUCCUAGACCACGGG	chr15:75653079-75653352(-)$1	273	66	91	20.0932
UCGGGCGACCUUGAUUCUGAGCCCG	chr16:30077523-30077758(+)$1	235	185	210	20.0932
UCUGGGACCUCAAGUUCUGCCCCAG	chr2:27558742-27559055(-)$1	313	213	238	20.9411
GGGGAGGCGUACCCUGCUCACCUGC	chr22:29956961-29957270(-)$1	309	139	164	13.1491
GUUCGGGGCGAAUCAAUGGGCUGCG	chr17:73178324-73178615(-)$1	291	195	220	16.5070

#DB
((((((((...........))))))	chr16:67213040-67213347(-)$1	1	82	107	18.6618
....(((...............)))	chr6:41556367-41556625(+)$1	1	220	245	16.0490
(((((.(((..........))))))	chr16:68267696-68267947(-)$1	1	186	211	16.5741
(((..((..............))..	chr1:40777658-40777913(-)$1	1	210	235	19.0031
((((((((...........)))...	chr20:442638-442910(-)$1	1	51	76	20.3133
(((((.(((.........)))...)	chr19:808684-808949(+)$1	1	179	204	12.5652
((.(((((...........))))))	chr15:34655969-34656238(-)$1	1	64	89	20.7946
((((((((..............)))	chr12:132392478-132392706(+)$1	1	160	185	17.5542
((((((((...........)))).)	chr1:889568-889831(-)$1	1	124	149	20.3468
....(((............)))...	chr3:48481895-48482162(+)$1	1	81	106	18.2699
((.((................)).)	chr20:34292404-34292652(-)$1	1	114	139	17.9126
(((.((((...........)))).)	chr3:42845683-42845941(-)$1	1	127	152	21.0171
..((.(((............))).)	chr9:131750194-131750463(+)$1	1	216	241	20.9076
((((((((.............))))	chr1:19203500-19203759(-)$1	1	13	38	19.5399
.(((((..............)))))	chr10:105155823-105156185(-)$1	1	92	117	21.0033
((.((((............)))).)	chr19:59067498-59067755(-)$1	1	105	130	21.2837
(((..(((...........)))..)	chr19:49497136-49497406(+)$1	1	193	218	20.7384
(((.(((............)))...	chr19:5894800-5895076(-)$1	1	233	258	22.0231
(((((((............))))))	chr16:89940476-89940724(+)$1	1	172	197	19.0878
((((((((..............)))	chr16:71957259-71957579(+)$1	1	170	195	17.5542
.(((((((...........))))))	chr4:1803945-1804221(+)$1	1	111	136	19.3081
....((.............))....	chrX:153628883-153629142(+)$1	1	145	170	18.6736
(....((((..........))))..	chr1:173835176-173835449(-)$1	1	140	165	15.5127
..(((((............)))))(	chr10:88827685-88827942(-)$1	1	158	183	19.5202
(((.(((...............)))	chr8:9629528-9629761(+)$1	1	137	162	16.8745
(((..(((..........)))..))	chr20:34218875-34219101(-)$1	1	46	71	15.7900
.(((((..............)))))	chr22:37891336-37891589(-)$1	1	152	177	21.0033
(((.((((..........)))))))	chr12:56742134-56742412(-)$1	1	98	123	15.5095
.(((((((...........))))))	chr6:5260638-5260949(-)$1	1	29	54	20.1207
)..(((((............)))))	chr20:32661344-32661602(+)$1	1	45	70	19.2785
....(((((..........))))).	chr17:80186991-80187284(+)$1	1	61	86	14.2398
(..(((((............)))))	chr8:23003020-23003316(-)$1	1	28	53	21.5125
((((.((((..........)))).)	chr4:187201400-187201761(+)$1	1	226	251	15.3564
(((.(...............).)))	chr21:44527259-44527509(-)$1	1	150	175	16.8086
((.(((..............))).)	chr7:73038250-73038487(-)$1	1	34	59	20.7794
((((((.(...........))))))	chr5:176523164-176523421(+)$1	1	148	173	20.7051
(((((..(..........)..))))	chr10:18948629-18948897(+)$1	1	49	74	16.1473
.((((..............)))).(	chr20:17662002-17662252(-)$1	1	94	119	17.4673
(((((((.............)))))	chr5:176980987-176981296(-)$1	1	74	99	19.9557
)))(((((............)))))	chr9:130213317-130213586(-)$1	1	82	107	20.9608
(((................))))).	chr20:3782184-3782487(+)$1	1	243	268	18.0753
.((((..............))))..	chr17:40629735-40630004(+)$1	1	96	121	19.4468
(((((.((..........)).))))	chr9:139720744-139720999(+)$1	1	42	67	14.9512
(((((.(((..........))).))	chr18:47811880-47812154(-)$1	1	87	112	15.0583
((..((((............)))).	chr5:1083616-1083873(-)$1	1	179	204	20.0846
(((.((((...........)))).)	chr19:7679916-7680166(+)$1	1	145	170	20.5684
((((.(((...........))).))	chr19:35491448-35491749(+)$1	1	68	93	21.2057
(((.(((((.........))))).)	chr8:145619174-145619418(-)$1	1	20	45	12.0123
(((.((((...........)))).)	chr17:37856482-37856761(+)$1	1	63	88	21.0171
.(((((..............)))))	chr15:75653079-75653352(-)$1	1	66	91	20.0932
.(((((..............)))))	chr16:30077523-30077758(+)$1	1	185	210	20.0932
.(((((..............)))))	chr2:27558742-27559055(-)$1	1	213	238	20.9411
(((.(((.(.........).))).)	chr22:29956961-29957270(-)$1	1	139	164	13.1491
(((((.(((..........))).))	chr17:73178324-73178615(-)$1	1	195	220	16.5070

#PSSM
e : 0.20	c : 0.16	d : 0.11	: : 0.09	h : 0.07	! : 0.07	f : 0.05	$ : 0.03	G : 0.03	= : 0.03	g : 0.03	+ : 0.01	# : 0.01	" : 0.01	[ : 0.01	
e : 0.29	d : 0.14	c : 0.14	f : 0.07	g : 0.07	h : 0.05	$ : 0.03	! : 0.03	= : 0.03	# : 0.03	: : 0.03	+ : 0.01	
e : 0.29	d : 0.14	c : 0.09	[ : 0.07	g : 0.07	f : 0.05	h : 0.05	$ : 0.03	= : 0.03	# : 0.03	! : 0.03	+ : 0.01	b : 0.01	: : 0.01	
e : 0.27	[ : 0.16	d : 0.09	! : 0.07	g : 0.07	h : 0.05	f : 0.03	$ : 0.03	c : 0.03	b : 0.03	= : 0.03	# : 0.03	+ : 0.01	y : 0.01	
e : 0.29	d : 0.18	c : 0.11	g : 0.07	! : 0.05	h : 0.05	[ : 0.05	f : 0.03	b : 0.03	= : 0.03	# : 0.01	a : 0.01	y : 0.01	
e : 0.22	c : 0.20	d : 0.16	[ : 0.09	g : 0.07	f : 0.03	b : 0.03	h : 0.03	y : 0.03	w : 0.03	= : 0.01	x : 0.01	! : 0.01	
c : 0.25	d : 0.16	w : 0.14	e : 0.12	g : 0.05	f : 0.03	b : 0.03	h : 0.03	y : 0.03	= : 0.01	v : 0.01	x : 0.01	[ : 0.01	! : 0.01	
c : 0.16	w : 0.16	d : 0.14	e : 0.11	u : 0.09	x : 0.05	h : 0.03	y : 0.03	g : 0.03	v : 0.03	a : 0.03	f : 0.01	= : 0.01	b : 0.01	[ : 0.01	
t : 0.22	w : 0.20	u : 0.18	c : 0.07	s : 0.07	x : 0.05	v : 0.05	y : 0.03	d : 0.03	e : 0.03	a : 0.01	
t : 0.22	w : 0.20	s : 0.18	u : 0.18	x : 0.05	r : 0.05	v : 0.05	y : 0.03	
t : 0.22	w : 0.20	s : 0.18	u : 0.18	x : 0.05	r : 0.05	v : 0.05	y : 0.03	
t : 0.22	w : 0.20	s : 0.18	u : 0.18	x : 0.05	r : 0.05	v : 0.05	y : 0.03	
t : 0.22	w : 0.20	s : 0.18	u : 0.18	x : 0.05	r : 0.05	v : 0.05	y : 0.03	
t : 0.22	w : 0.20	s : 0.18	u : 0.18	x : 0.05	r : 0.05	v : 0.05	y : 0.03	
t : 0.22	w : 0.20	s : 0.18	u : 0.18	x : 0.05	r : 0.05	v : 0.05	y : 0.03	
t : 0.22	w : 0.20	s : 0.18	u : 0.18	x : 0.05	r : 0.05	v : 0.05	y : 0.03	
t : 0.22	w : 0.20	s : 0.18	u : 0.18	x : 0.05	r : 0.05	v : 0.05	y : 0.03	
t : 0.22	w : 0.20	s : 0.18	u : 0.18	x : 0.05	r : 0.05	v : 0.05	y : 0.03	
t : 0.22	w : 0.20	u : 0.18	s : 0.11	x : 0.05	v : 0.05	c : 0.03	y : 0.03	a : 0.03	d : 0.01	b : 0.01	e : 0.01	
c : 0.18	d : 0.18	w : 0.16	e : 0.09	u : 0.09	x : 0.05	f : 0.03	v : 0.03	g : 0.03	b : 0.03	y : 0.01	a : 0.01	2 : 0.01	] : 0.01	
c : 0.24	e : 0.24	d : 0.20	g : 0.07	w : 0.05	f : 0.03	x : 0.03	y : 0.01	v : 0.01	b : 0.01	a : 0.01	2 : 0.01	] : 0.01	
e : 0.25	c : 0.20	d : 0.20	g : 0.07	f : 0.03	x : 0.03	b : 0.03	w : 0.03	= : 0.03	3 : 0.01	4 : 0.01	2 : 0.01	] : 0.01	
e : 0.27	d : 0.18	c : 0.12	g : 0.07	] : 0.05	f : 0.03	b : 0.03	4 : 0.03	3 : 0.03	h : 0.03	= : 0.03	2 : 0.03	> : 0.01	
e : 0.29	] : 0.20	c : 0.09	g : 0.07	2 : 0.05	3 : 0.05	h : 0.05	f : 0.03	4 : 0.03	= : 0.03	> : 0.01	: : 0.01	d : 0.01	
e : 0.31	c : 0.18	g : 0.07	f : 0.05	h : 0.05	d : 0.05	2 : 0.03	4 : 0.03	b : 0.03	= : 0.03	3 : 0.03	5 : 0.03	> : 0.01	] : 0.01	

#score	999.9296082815797
#seq	54
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_transcript_m2_run1.txt

#BEAR
!!bb[bbqqqqqqqqbb]bb2	chr17:71281363-71281617(-)$1	254	146	167	14.0037
gggggggqqqqqqqqgggggg	chr4:69682089-69682328(+)$1	239	98	119	14.8961
cc[ddddqqqqqqqqddddcc	chr11:85779687-85779974(-)$1	287	212	233	14.1034
bbeeeeeqqqqqqqqeeeee]	chr22:41487888-41488145(+)$1	257	179	200	13.4427
ddeeeeeqqqqqqqqeeeee2	chr22:31741797-31742048(-)$1	251	170	191	13.6447
c[cccbbqqqqqqqqbb]ccc	chr16:30615303-30615549(-)$1	246	78	99	14.8938
dddddddqqqqqqqqdddd]d	chr11:46741474-46741750(+)$1	276	125	146	13.5142
:ffffffqqqqqqqqffffff	chr3:30713131-30713384(+)$1	253	8	29	13.1505
:ffffffqqqqqqqqffffff	chr2:43453202-43453453(-)$1	251	108	129	13.1505
fffbbbbqqqqqqqqbb]bb2	chr17:41477763-41478050(+)$1	287	180	201	13.5159
ff!!cccqqqqqqqqccc555	chr14:24105527-24105793(+)$1	266	144	165	13.1472
gggggggqqqqqqqqgggggg	chr16:30543682-30543937(-)$1	255	0	21	14.8961
[ccc[bbqqqqqqqqbb]ccc	chr6:30584478-30584737(-)$1	259	76	97	14.9616
eee[cccqqqqqqqqccc]ee	chr16:30750211-30750470(+)$1	259	234	255	15.0308
c"""cccqqqqqqqqccc333	chr1:202702641-202702918(-)$1	277	122	143	15.7401
:ccccccqqqqqqqqccc]cc	chr14:21560221-21560449(-)$1	228	205	226	14.3539
[dddd[aqqqqqqqqa]dddd	chr16:69368581-69368844(-)$1	263	186	207	14.0559
iiiiiiiqqqqqqqqiiiiii	chr17:25636128-25636356(+)$1	228	183	204	14.8868
ddd[cccqqqqqqqqccc22d	chr12:12870382-12870648(+)$1	266	103	124	14.4598
gggggggqqqqqqqqgggggg	chr2:198570676-198570932(+)$1	256	93	114	14.8961
ggggcccqqqqqqqqccc::c	chr6:32939469-32939688(+)$1	219	189	210	13.5096
[ffffffqqqqqqqqffffff	chr9:14775958-14776183(-)$1	225	89	110	14.2240
[bb[cccqqqqqqqqccc]bb	chr19:47290458-47290698(-)$1	240	6	27	14.4471
hh"""bbqqqqqqqqbb22hh	chr20:33470502-33470765(+)$1	263	202	223	13.6260
ee[ddddqqqqqqqqdddd]e	chr6:30711745-30712009(-)$1	264	109	130	13.8933
eeeecccqqqqqqqqccc]ee	chr20:31022348-31022605(+)$1	257	10	31	14.8465
"ccccccqqqqqqqqccc]cc	chr10:125768001-125768279(-)$1	278	163	184	15.3309
"""ddddqqqqqqqqdddd]a	chr6:33169080-33169316(+)$1	236	179	200	14.2215
####cccqqqqqqqqccc555	chr20:25456948-25457192(-)$1	244	100	121	13.1766
""eeeeeqqqqqqqqeeeee3	chr14:23450780-23451005(-)$1	225	193	214	14.2333
gggggggqqqqqqqqgggggg	chr16:57238522-57238806(+)$1	284	132	153	14.8961
!ccccccqqqqqqqqccc]cc	chr19:11242527-11242761(+)$1	234	180	201	15.4107
ffa[cccqqqqqqqqccc]a]	chr22:50875263-50875509(+)$1	246	21	42	15.2041
[ccc!!aqqqqqqqqa]ccc=	chr17:63554378-63554643(-)$1	265	67	88	14.9243
ggggggaqqqqqqqqa]gggg	chr19:18390849-18391078(-)$1	229	35	56	14.9086
ee!!cccqqqqqqqqccc333	chr12:12870865-12871108(+)$1	243	12	33	15.6732
:ffffffqqqqqqqqffffff	chr1:36752562-36752819(+)$1	257	1	22	13.1505
g[ccc[aqqqqqqqqaccc]g	chr20:52198046-52198292(-)$1	246	159	180	15.1242
gggggggqqqqqqqqgggggg	chr2:20648248-20648500(+)$1	252	54	75	14.8961
eeeddddqqqqqqqqdddd22	chr3:30713850-30714079(+)$1	229	33	54	13.6066
i!!ddddqqqqqqqqdddd33	chr6:30711380-30711603(-)$1	223	177	198	14.5551
fffff[aqqqqqqqqafffff	chr19:15509785-15510030(-)$1	245	138	159	14.1395
c"""cccqqqqqqqqccc444	chr16:87364072-87364361(-)$1	289	220	241	15.5128
d[eeeeeqqqqqqqqeeeee]	chr14:31364548-31364791(-)$1	243	164	185	13.9322
[ffffffqqqqqqqqffffff	chr16:1988769-1989033(-)$1	264	193	214	14.2240
####cccqqqqqqqqccc555	chr10:125768915-125769157(-)$1	242	187	208	13.1766
ddddd[aqqqqqqqqa]dddd	chr16:24551579-24551832(+)$1	253	209	230	13.7205
[ffffffqqqqqqqqffffff	chr19:5839089-5839362(-)$1	273	27	48	14.2240
:ddddbbqqqqqqqqbb]ddd	chr9:139301632-139301874(-)$1	242	22	43	13.2013
:ffffffqqqqqqqqffffff	chr4:17625291-17625601(+)$1	310	263	284	13.1505
[ddddbbqqqqqqqqbb]ddd	chr12:49445902-49446122(-)$1	220	122	143	14.2748
iiibbbbqqqqqqqqbb]bb2	chr16:67978398-67978646(-)$1	248	62	83	13.8506
=======qqqqqqqq======	chr20:30193935-30194181(+)$1	246	214	235	15.2774
[a[ddddqqqqqqqqdddd]a	chrX:108976342-108976592(-)$1	250	93	114	14.2933
gggggggqqqqqqqqgggggg	chr3:129369705-129369966(-)$1	261	137	158	14.8961
cceeeeeqqqqqqqqeeeee3	chr6:31600408-31600632(+)$1	224	6	27	14.1028
eee!!bbqqqqqqqqbb]eee	chr2:110373212-110373448(+)$1	236	155	176	14.5468
cc!!cccqqqqqqqqcccccc	chr20:30309406-30309640(-)$1	234	110	131	15.4110
eeeeebbqqqqqqqqbb]eee	chr17:41477294-41477535(+)$1	241	201	222	14.2591
[a[bbbbqqqqqqqqbb]bba	chr1:3237358-3237610(+)$1	252	193	214	14.0263
dd"""bbqqqqqqqqbb]ddd	chr18:30351021-30351261(+)$1	240	134	155	14.3181
=======qqqqqqqq======	chr3:10291016-10291292(+)$1	276	190	211	15.2774
!!eeeeeqqqqqqqqeeeee2	chr19:2810059-2810303(+)$1	244	157	178	14.1631
gggg[bbqqqqqqqqbb]ggg	chr2:26257455-26257715(+)$1	260	58	79	14.9697
cc"""bbqqqqqqqqbb]ccc	chr9:94172881-94173166(-)$1	285	167	188	14.8781
ddd[cccqqqqqqqqccc]dd	chr20:61542404-61542658(-)$1	254	214	235	14.7401

#otherMatches

#Seq PSSM
ACCCUUGAUUCAGACCAUGGA	chr17:71281363-71281617(-)$1	254	146	167	14.0037
GCUUAUUUACCCUGUGGUGAG	chr4:69682089-69682328(+)$1	239	98	119	14.8961
GCCGUAUCCAAGACAGUAUGC	chr11:85779687-85779974(-)$1	287	212	233	14.1034
CGCGGCGUCUUCUcccgccgc	chr22:41487888-41488145(+)$1	257	179	200	13.4427
CCCCCGGAAGGUAGACCGGGA	chr22:31741797-31742048(-)$1	251	170	191	13.6447
acagagcugaacuuuguaucu	chr16:30615303-30615549(-)$1	246	78	99	14.8938
GGACUGUGUCCCUGUGCAGCU	chr11:46741474-46741750(+)$1	276	125	146	13.5142
CAGCAAUCCUGACUUGUUGCU	chr3:30713131-30713384(+)$1	253	8	29	13.1505
UGUCCCCAGGUUCUGGGGGAC	chr2:43453202-43453453(-)$1	251	108	129	13.1505
GAGACGUAAAUGUAAACUGUG	chr17:41477763-41478050(+)$1	287	180	201	13.5159
uuaagagcuguaacacucacc	chr14:24105527-24105793(+)$1	266	144	165	13.1472
GGGGCGUAGGGGCCGGCGCCC	chr16:30543682-30543937(-)$1	255	0	21	14.8961
CCACCAGCCCAACCACUUGUG	chr6:30584478-30584737(-)$1	259	76	97	14.9616
AGCACUUCUGUUCUCGAGAGC	chr16:30750211-30750470(+)$1	259	234	255	15.0308
AAUCUGGCUUUGUCCCCAUUG	chr1:202702641-202702918(-)$1	277	122	143	15.7401
CGGAGGCUUCCGCCCGCUGUC	chr14:21560221-21560449(-)$1	228	205	226	14.3539
AAUGAACUCCUACAUGCUCAU	chr16:69368581-69368844(-)$1	263	186	207	14.0559
GAAUUAUUUUAGUCUAUAAUU	chr17:25636128-25636356(+)$1	228	183	204	14.8868
GGACGGGCUUUGCCACCCUCU	chr12:12870382-12870648(+)$1	266	103	124	14.4598
GGCUUUCCCAGUUCCGGAAGC	chr2:198570676-198570932(+)$1	256	93	114	14.8961
AGUCGGCGGACCACAGCUCAG	chr6:32939469-32939688(+)$1	219	189	210	13.5096
UGGCCCAAGGGGCCGUGGGCC	chr9:14775958-14776183(-)$1	225	89	110	14.2240
CAAGGAGGUGCUCGAUUCGUU	chr19:47290458-47290698(-)$1	240	6	27	14.4471
UGAAAGGAGCAACUACCAACA	chr20:33470502-33470765(+)$1	263	202	223	13.6260
UCUGCCAGAUCCUGAUGGCUG	chr6:30711745-30712009(-)$1	264	109	130	13.8933
CAGACAUUAAAGCCCGUGCUC	chr20:31022348-31022605(+)$1	257	10	31	14.8465
AGAAGGGACACACAGCCCGUU	chr10:125768001-125768279(-)$1	278	163	184	15.3309
GACCAUGGACAUUCACAUGAG	chr6:33169080-33169316(+)$1	236	179	200	14.2215
AACAGAGAGAGACGCCUCGCA	chr20:25456948-25457192(-)$1	244	100	121	13.1766
UUCGGCUGCCAGGAAAGCCGC	chr14:23450780-23451005(-)$1	225	193	214	14.2333
CACUUCCUAGGGACUGGAGGU	chr16:57238522-57238806(+)$1	284	132	153	14.8961
CGUGAGGACACGUGGCCUGCA	chr19:11242527-11242761(+)$1	234	180	201	15.4107
AGAGAUCUGAUGAGUGAUGUG	chr22:50875263-50875509(+)$1	246	21	42	15.2041
ACCAGGCGGAACGAAGAUGGG	chr17:63554378-63554643(-)$1	265	67	88	14.9243
GGGGGGCGAGCGCAUGACCCC	chr19:18390849-18391078(-)$1	229	35	56	14.9086
GGUGGACCACGAAGAGUUAAC	chr12:12870865-12871108(+)$1	243	12	33	15.6732
CGGGAGCGAAGCCCAGCUCUC	chr1:36752562-36752819(+)$1	257	1	22	13.1505
UGUGGACGGGAGGCAGCCGGG	chr20:52198046-52198292(-)$1	246	159	180	15.1242
Guuauauaaauauagauauaa	chr2:20648248-20648500(+)$1	252	54	75	14.8961
UCUGGACCCUACUCUGUCUGU	chr3:30713850-30714079(+)$1	229	33	54	13.6066
GUCCUCCUAGGUGAUGGAGAU	chr6:30711380-30711603(-)$1	223	177	198	14.5551
CCGAGACCUGACACCGCUCGG	chr19:15509785-15510030(-)$1	245	138	159	14.1395
GUUCCAGCCACUUGACUGUCC	chr16:87364072-87364361(-)$1	289	220	241	15.5128
UAUUUGUAUGAAUCAACAAAA	chr14:31364548-31364791(-)$1	243	164	185	13.9322
CUCCAGGAGGUGAGCCCUGGG	chr16:1988769-1989033(-)$1	264	193	214	14.2240
UUUUUGGCAGCACCUUCAUCU	chr10:125768915-125769157(-)$1	242	187	208	13.1766
CCCCUGCUUGUGGUUGGGGGG	chr16:24551579-24551832(+)$1	253	209	230	13.7205
uuguuccuuguaacuggaaug	chr19:5839089-5839362(-)$1	273	27	48	14.2240
CCUGCCGUCCGCCAUCGAGCA	chr9:139301632-139301874(-)$1	242	22	43	13.2013
GAAAAAUUUUCCACUAUUUUU	chr4:17625291-17625601(+)$1	310	263	284	13.1505
UGGAGGAAUCGCCCCUCUCUC	chr12:49445902-49446122(-)$1	220	122	143	14.2748
GGGCCUCAAAAUGGAGAUGGA	chr16:67978398-67978646(-)$1	248	62	83	13.8506
UUUGAAAAGCAGACAUUUUAA	chr20:30193935-30194181(+)$1	246	214	235	15.2774
UGCGGCUUUUUCUCUGGCCUC	chrX:108976342-108976592(-)$1	250	93	114	14.2933
GUCCGUGGAAGAACACAUGGA	chr3:129369705-129369966(-)$1	261	137	158	14.8961
AGACUGCAUCAGAGAGCAGUG	chr6:31600408-31600632(+)$1	224	6	27	14.1028
UGGAGGGGACCAUCACCACCA	chr2:110373212-110373448(+)$1	236	155	176	14.5468
UCGGAUCGCAGCUUGGAUGGC	chr20:30309406-30309640(-)$1	234	110	131	15.4110
GCUGGCCAACAAGCAGGACCA	chr17:41477294-41477535(+)$1	241	201	222	14.2591
CGUGCCCUUCCUCAUGGAGCC	chr1:3237358-3237610(+)$1	252	193	214	14.0263
GGUGUGCGAAUCUUAGCUCUC	chr18:30351021-30351261(+)$1	240	134	155	14.3181
GGUUCCUGUCUUCAGGGGGAU	chr3:10291016-10291292(+)$1	276	190	211	15.2774
CACUGUGGCAGCUGACACGGG	chr19:2810059-2810303(+)$1	244	157	178	14.1631
CUCCUGAUCGGGGAUUCCGGA	chr2:26257455-26257715(+)$1	260	58	79	14.9697
GCAGACCGUCAAAAAGGAGCA	chr9:94172881-94173166(-)$1	285	167	188	14.8781
AGGAGCCCACUGAGAGGCCCC	chr20:61542404-61542658(-)$1	254	214	235	14.7401

#DB
..((.((........)).)).	chr17:71281363-71281617(-)$1	1	146	167	14.0037
(((((((........))))))	chr4:69682089-69682328(+)$1	1	98	119	14.8961
((.((((........))))))	chr11:85779687-85779974(-)$1	1	212	233	14.1034
(((((((........))))).	chr22:41487888-41488145(+)$1	1	179	200	13.4427
(((((((........))))).	chr22:31741797-31742048(-)$1	1	170	191	13.6447
(.(((((........)).)))	chr16:30615303-30615549(-)$1	1	78	99	14.8938
(((((((........)))).)	chr11:46741474-46741750(+)$1	1	125	146	13.5142
.((((((........))))))	chr3:30713131-30713384(+)$1	1	8	29	13.1505
.((((((........))))))	chr2:43453202-43453453(-)$1	1	108	129	13.1505
(((((((........)).)).	chr17:41477763-41478050(+)$1	1	180	201	13.5159
((..(((........)))...	chr14:24105527-24105793(+)$1	1	144	165	13.1472
(((((((........))))))	chr16:30543682-30543937(-)$1	1	0	21	14.8961
.(((.((........)).)))	chr6:30584478-30584737(-)$1	1	76	97	14.9616
(((.(((........))).))	chr16:30750211-30750470(+)$1	1	234	255	15.0308
(...(((........)))...	chr1:202702641-202702918(-)$1	1	122	143	15.7401
.((((((........))).))	chr14:21560221-21560449(-)$1	1	205	226	14.3539
.((((.(........).))))	chr16:69368581-69368844(-)$1	1	186	207	14.0559
(((((((........))))))	chr17:25636128-25636356(+)$1	1	183	204	14.8868
(((.(((........)))..)	chr12:12870382-12870648(+)$1	1	103	124	14.4598
(((((((........))))))	chr2:198570676-198570932(+)$1	1	93	114	14.8961
))))(((........)))..(	chr6:32939469-32939688(+)$1	1	189	210	13.5096
.((((((........))))))	chr9:14775958-14776183(-)$1	1	89	110	14.2240
.((.(((........))).))	chr19:47290458-47290698(-)$1	1	6	27	14.4471
((...((........))..))	chr20:33470502-33470765(+)$1	1	202	223	13.6260
((.((((........)))).)	chr6:30711745-30712009(-)$1	1	109	130	13.8933
(((((((........))).))	chr20:31022348-31022605(+)$1	1	10	31	14.8465
.((((((........))).))	chr10:125768001-125768279(-)$1	1	163	184	15.3309
...((((........)))).)	chr6:33169080-33169316(+)$1	1	179	200	14.2215
....(((........)))...	chr20:25456948-25457192(-)$1	1	100	121	13.1766
..(((((........))))).	chr14:23450780-23451005(-)$1	1	193	214	14.2333
(((((((........))))))	chr16:57238522-57238806(+)$1	1	132	153	14.8961
.((((((........))).))	chr19:11242527-11242761(+)$1	1	180	201	15.4107
(((.(((........))).).	chr22:50875263-50875509(+)$1	1	21	42	15.2041
.(((..(........).))))	chr17:63554378-63554643(-)$1	1	67	88	14.9243
(((((((........).))))	chr19:18390849-18391078(-)$1	1	35	56	14.9086
((..(((........)))...	chr12:12870865-12871108(+)$1	1	12	33	15.6732
.((((((........))))))	chr1:36752562-36752819(+)$1	1	1	22	13.1505
(.(((.(........)))).)	chr20:52198046-52198292(-)$1	1	159	180	15.1242
(((((((........))))))	chr2:20648248-20648500(+)$1	1	54	75	14.8961
(((((((........))))..	chr3:30713850-30714079(+)$1	1	33	54	13.6066
(..((((........))))..	chr6:30711380-30711603(-)$1	1	177	198	14.5551
(((((.(........))))))	chr19:15509785-15510030(-)$1	1	138	159	14.1395
(...(((........)))...	chr16:87364072-87364361(-)$1	1	220	241	15.5128
(.(((((........))))).	chr14:31364548-31364791(-)$1	1	164	185	13.9322
.((((((........))))))	chr16:1988769-1989033(-)$1	1	193	214	14.2240
....(((........)))...	chr10:125768915-125769157(-)$1	1	187	208	13.1766
)((((.(........).))))	chr16:24551579-24551832(+)$1	1	209	230	13.7205
.((((((........))))))	chr19:5839089-5839362(-)$1	1	27	48	14.2240
.((((((........)).)))	chr9:139301632-139301874(-)$1	1	22	43	13.2013
.((((((........))))))	chr4:17625291-17625601(+)$1	1	263	284	13.1505
.((((((........)).)))	chr12:49445902-49446122(-)$1	1	122	143	14.2748
(((((((........)).)).	chr16:67978398-67978646(-)$1	1	62	83	13.8506
(((((((........))))))	chr20:30193935-30194181(+)$1	1	214	235	15.2774
.(.((((........)))).)	chrX:108976342-108976592(-)$1	1	93	114	14.2933
(((((((........))))))	chr3:129369705-129369966(-)$1	1	137	158	14.8961
(((((((........))))).	chr6:31600408-31600632(+)$1	1	6	27	14.1028
(((..((........)).)))	chr2:110373212-110373448(+)$1	1	155	176	14.5468
((..(((........))))))	chr20:30309406-30309640(-)$1	1	110	131	15.4110
(((((((........)).)))	chr17:41477294-41477535(+)$1	1	201	222	14.2591
.(.((((........)).)))	chr1:3237358-3237610(+)$1	1	193	214	14.0263
((...((........)).)))	chr18:30351021-30351261(+)$1	1	134	155	14.3181
(((((((........))))))	chr3:10291016-10291292(+)$1	1	190	211	15.2774
..(((((........))))).	chr19:2810059-2810303(+)$1	1	157	178	14.1631
((((.((........)).)))	chr2:26257455-26257715(+)$1	1	58	79	14.9697
((...((........)).)))	chr9:94172881-94173166(-)$1	1	167	188	14.8781
(((.(((........))).))	chr20:61542404-61542658(-)$1	1	214	235	14.7401

#PSSM
g : 0.15	[ : 0.15	c : 0.10	d : 0.10	e : 0.10	: : 0.09	f : 0.06	! : 0.04	i : 0.04	" : 0.04	# : 0.03	= : 0.03	b : 0.01	h : 0.01	
f : 0.16	g : 0.13	c : 0.13	d : 0.13	e : 0.10	" : 0.06	! : 0.04	[ : 0.04	b : 0.03	i : 0.03	# : 0.03	= : 0.03	a : 0.03	h : 0.01	
e : 0.16	g : 0.13	f : 0.13	c : 0.10	d : 0.10	" : 0.09	[ : 0.06	! : 0.06	b : 0.03	i : 0.03	# : 0.03	= : 0.03	a : 0.01	
d : 0.16	g : 0.13	e : 0.12	f : 0.12	c : 0.10	[ : 0.07	" : 0.07	b : 0.06	! : 0.06	# : 0.03	= : 0.03	i : 0.01	
c : 0.28	d : 0.16	f : 0.12	g : 0.10	e : 0.10	[ : 0.04	b : 0.04	" : 0.04	! : 0.03	= : 0.03	i : 0.01	
c : 0.25	b : 0.21	g : 0.10	d : 0.10	f : 0.10	e : 0.09	[ : 0.06	= : 0.03	i : 0.01	! : 0.01	
c : 0.25	b : 0.21	d : 0.10	f : 0.10	g : 0.09	e : 0.09	a : 0.09	= : 0.03	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.25	b : 0.21	d : 0.10	f : 0.10	g : 0.09	e : 0.09	a : 0.09	= : 0.03	i : 0.01	
c : 0.27	b : 0.21	f : 0.12	d : 0.10	g : 0.09	e : 0.09	] : 0.06	= : 0.03	i : 0.01	
c : 0.28	] : 0.19	d : 0.13	f : 0.12	g : 0.10	e : 0.09	= : 0.03	i : 0.01	2 : 0.01	
d : 0.18	g : 0.12	e : 0.12	f : 0.12	] : 0.12	c : 0.09	b : 0.06	5 : 0.04	3 : 0.03	2 : 0.03	= : 0.03	i : 0.01	: : 0.01	4 : 0.01	
e : 0.15	c : 0.13	g : 0.12	f : 0.12	d : 0.09	b : 0.07	] : 0.07	5 : 0.04	3 : 0.04	2 : 0.03	= : 0.03	i : 0.01	: : 0.01	h : 0.01	a : 0.01	4 : 0.01	
g : 0.13	c : 0.13	d : 0.12	f : 0.12	2 : 0.09	e : 0.07	3 : 0.07	] : 0.04	5 : 0.04	a : 0.04	= : 0.04	i : 0.01	b : 0.01	h : 0.01	4 : 0.01	

#score	947.1716864254422
#seq	66
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_CDS_m2_run2.txt

#BEAR
bcccqqqqqqqqccc22	chr3:49063664-49063926(-)$1	262	92	109	13.4294
ddddqqqqqqqqdddd]	chr8:144992845-144993102(-)$1	257	201	218	15.0931
ddddqqqqqqqqddddg	chr10:75848853-75849085(+)$1	232	56	73	14.8476
ddddqqqqqqqqdddd:	chr17:1564484-1564740(-)$1	256	155	172	14.3484
!cccqqqqqqqqccc22	chrX:153590938-153591157(-)$1	219	9	26	13.8116
ggggqqqqqqqqggggg	chrX:153588805-153589023(-)$1	218	26	43	12.9889
ddddqqqqqqqqdddd:	chr17:57758956-57759209(+)$1	253	94	111	14.3484
ffffqqqqqqqqfffff	chr12:57003583-57003829(-)$1	246	22	39	12.4080
[cccqqqqqqqqcccdd	chr12:69201990-69202373(+)$1	383	234	251	13.8978
ddddqqqqqqqqdddd]	chr17:8396087-8396361(-)$1	274	122	139	15.0931
ddddqqqqqqqqdddd4	chr3:184025577-184025833(+)$1	256	119	136	15.0454
ddddqqqqqqqqdddd]	chr9:134363247-134363507(+)$1	260	148	165	15.0931
ddddqqqqqqqqdddd]	chr1:6661756-6661972(-)$1	216	9	26	15.0931
ddddqqqqqqqqddddb	chr5:138163112-138163372(+)$1	260	32	49	14.7282
"cccqqqqqqqqccc22	chr2:217002789-217003002(+)$1	213	59	76	13.7095
ddddqqqqqqqqddddC	chr3:184044947-184045222(+)$1	275	122	139	14.0927
ccccqqqqqqqqccc]c	chr3:184043043-184043255(+)$1	212	5	22	13.7740
ddddqqqqqqqqdddd:	chr3:184035168-184035386(+)$1	218	59	76	14.3484
#cccqqqqqqqqccc33	chr2:217024759-217024985(+)$1	226	186	203	13.9992
ffffqqqqqqqqfffff	chr2:96958953-96959162(-)$1	209	53	70	12.4080
ddddqqqqqqqqdddd:	chr5:149758710-149758994(+)$1	284	203	220	14.3484
ffffqqqqqqqqfffff	chr1:202711452-202711733(-)$1	281	56	73	12.4080
eeeeqqqqqqqqeeeee	chr21:47693236-47693473(-)$1	237	192	209	13.6319
[cccqqqqqqqqccc]b	chr1:160276852-160277131(-)$1	279	233	250	13.6868
eeeeqqqqqqqqeeeee	chrX:153588056-153588276(-)$1	220	49	66	13.6319
ff[aqqqqqqqqaffff	chr19:7706535-7706838(+)$1	303	208	225	12.5412
ddddqqqqqqqqdddd3	chr14:102506472-102506693(+)$1	221	175	192	15.1429
ddddqqqqqqqqdddde	chr6:31753360-31753608(-)$1	248	85	102	14.8438
eeeeqqqqqqqqeeeee	chr11:65835518-65835809(+)$1	291	273	290	13.6319
ccccqqqqqqqqccc22	chr19:11141375-11141625(+)$1	250	23	40	13.7402
d!!aqqqqqqqqa22dd	chr2:96956126-96956352(-)$1	226	123	140	12.6247
ddddqqqqqqqqdddd:	chr16:29808174-29808456(+)$1	282	202	219	14.3484
ddddqqqqqqqqdddd]	chr18:2931160-2931532(-)$1	372	334	351	15.0931
ddddqqqqqqqqdddd3	chr1:220208182-220208423(-)$1	241	179	196	15.1429
eeeeqqqqqqqqeeeee	chr19:11098436-11098693(+)$1	257	206	223	13.6319
ddddqqqqqqqqdddd5	chr8:48839659-48839900(-)$1	241	9	26	14.3866
eeeeqqqqqqqqeeeee	chr1:19431004-19431254(-)$1	250	174	191	13.6319
ddddqqqqqqqqddddJ	chr2:10583519-10583789(-)$1	270	137	154	13.6487
ddddqqqqqqqqdddd:	chr21:47676679-47676954(-)$1	275	47	64	14.3484
ddddqqqqqqqqdddd]	chr12:120588921-120589168(-)$1	247	49	66	15.0931
ffffqqqqqqqqfffff	chr1:226555125-226555410(-)$1	285	79	96	12.4080
[cccqqqqqqqqccc33	chr5:31511070-31511359(-)$1	289	148	165	14.1277
ddddqqqqqqqqddddb	chr14:102471432-102471659(+)$1	227	144	161	14.7282
====qqqqqqqq=====	chr17:1580189-1580399(-)$1	210	155	172	13.1562
[cccqqqqqqqqccccc	chr21:33719236-33719496(-)$1	260	97	114	13.7987
c[bbqqqqqqqqbb]cc	chr8:125551383-125551629(+)$1	246	96	113	11.8986
ffffqqqqqqqqfffff	chr17:40034258-40034506(-)$1	248	57	74	12.4080
eeeeqqqqqqqqeeeee	chr9:35725127-35725367(-)$1	240	218	235	13.6319
eeeeqqqqqqqqeeeee	chr6:31750282-31750501(-)$1	219	51	68	13.6319
ddddqqqqqqqqdddd:	chr10:103912048-103912320(+)$1	272	109	126	14.3484
"cccqqqqqqqqccc44	chr10:75842157-75842403(+)$1	246	87	104	13.9218
ddddqqqqqqqqdddd:	chr7:128477180-128477406(+)$1	226	91	108	14.3484
eeeeqqqqqqqqeeeee	chr2:109335995-109336231(+)$1	236	19	36	13.6319
ffffqqqqqqqqfffff	chr3:184040879-184041095(+)$1	216	32	49	12.4080
[cccqqqqqqqqccc]d	chr1:46751508-46751782(-)$1	274	190	207	13.7126
ddddqqqqqqqqddddb	chr3:184035135-184035368(+)$1	233	92	109	14.7282
eeeeqqqqqqqqeeeee	chr1:6659370-6659614(-)$1	244	148	165	13.6319
ddddqqqqqqqqdddd]	chr3:184040097-184040337(+)$1	240	189	206	15.0931
!cccqqqqqqqqccc22	chr7:98606023-98606279(+)$1	256	108	125	13.8116
dddaqqqqqqqqa]ddd	chr9:131755375-131755642(+)$1	267	193	210	13.9478
eeeeqqqqqqqqeeeee	chrX:153587254-153587466(-)$1	212	88	105	13.6319
ddddqqqqqqqqdddd:	chr3:184021377-184021624(+)$1	247	40	57	14.3484
#cccqqqqqqqqccc33	chr2:48031948-48032214(+)$1	266	173	190	13.9992

#otherMatches

#Seq PSSM
CCAAGAACCUCAUUGAU	chr3:49063664-49063926(-)$1	262	92	109	13.4294
CCUGCCCGGUUCCAGGC	chr8:144992845-144993102(-)$1	257	201	218	15.0931
GUAUUUGAGGGUGUACA	chr10:75848853-75849085(+)$1	232	56	73	14.8476
ACUGACUUUAAGCAGUA	chr17:1564484-1564740(-)$1	256	155	172	14.3484
AUGUGGGAGCUGGCAGC	chrX:153590938-153591157(-)$1	219	9	26	13.8116
GGGCAUAGUGUGGCCUU	chrX:153588805-153589023(-)$1	218	26	43	12.9889
UUGCUGAACGUUGCAAU	chr17:57758956-57759209(+)$1	253	94	111	14.3484
GGGCAUUGAAUGGUUCC	chr12:57003583-57003829(-)$1	246	22	39	12.4080
AGGGACCCCCGACUCCA	chr12:69201990-69202373(+)$1	383	234	251	13.8978
GCCUGGAGGAGAAGGCA	chr17:8396087-8396361(-)$1	274	122	139	15.0931
AGGGCACCCUUACCCUC	chr3:184025577-184025833(+)$1	256	119	136	15.0454
CGGGAACCAAGCCCUGG	chr9:134363247-134363507(+)$1	260	148	165	15.0931
CUGCUACAACCCGCAGA	chr1:6661756-6661972(-)$1	216	9	26	15.0931
CCUUGAAUAAAGAAGGG	chr5:138163112-138163372(+)$1	260	32	49	14.7282
UGCGGCAAUACAUGUUU	chr2:217002789-217003002(+)$1	213	59	76	13.7095
ACGGGGAGGGGACCGUG	chr3:184044947-184045222(+)$1	275	122	139	14.0927
CUUCCUAGCCCCGAAUG	chr3:184043043-184043255(+)$1	212	5	22	13.7740
GAUCCCUUCCCAGAUCU	chr3:184035168-184035386(+)$1	218	59	76	14.3484
UGCAUCAAUUUUUGUUA	chr2:217024759-217024985(+)$1	226	186	203	13.9992
GUAGCCACCUUUCUACG	chr2:96958953-96959162(-)$1	209	53	70	12.4080
CUCAGGGAGCAGUGAGG	chr5:149758710-149758994(+)$1	284	203	220	14.3484
UGUAUGUAUUCUUAUAU	chr1:202711452-202711733(-)$1	281	56	73	12.4080
GGAUGCUAAAAAAUCCA	chr21:47693236-47693473(-)$1	237	192	209	13.6319
GUGUAUUGCAAAAUAAA	chr1:160276852-160277131(-)$1	279	233	250	13.6868
UCUGACACAGACCGGAG	chrX:153588056-153588276(-)$1	220	49	66	13.6319
GGACCCCACCCAGCCCC	chr19:7706535-7706838(+)$1	303	208	225	12.5412
CAGGAUCCAGGGCCUGA	chr14:102506472-102506693(+)$1	221	175	192	15.1429
UGCCCCCUAACAGGCAC	chr6:31753360-31753608(-)$1	248	85	102	14.8438
UGCCAAACAGAAGGUAG	chr11:65835518-65835809(+)$1	291	273	290	13.6319
CCGUCAGGAACCACGAA	chr19:11141375-11141625(+)$1	250	23	40	13.7402
CCAGUAUGACACCAAGG	chr2:96956126-96956352(-)$1	226	123	140	12.6247
CUGGAGGAACCACCAGG	chr16:29808174-29808456(+)$1	282	202	219	14.3484
UGGUUAAAACUUACCGU	chr18:2931160-2931532(-)$1	372	334	351	15.0931
ACAUUUUGUUGUGUGUG	chr1:220208182-220208423(-)$1	241	179	196	15.1429
CCCAUGUCCCCCUGGGG	chr19:11098436-11098693(+)$1	257	206	223	13.6319
GCUAUACCCCCUUGGCA	chr8:48839659-48839900(-)$1	241	9	26	14.3866
AGGUAAAGAGCCACCUG	chr1:19431004-19431254(-)$1	250	174	191	13.6319
GGCAAUCUCUGAUGCCC	chr2:10583519-10583789(-)$1	270	137	154	13.6487
UCCCCAGGUGGAGGGAA	chr21:47676679-47676954(-)$1	275	47	64	14.3484
GGCUUAUGCAGCAGCUG	chr12:120588921-120589168(-)$1	247	49	66	15.0931
GGGCUUUCUUUUGCUCC	chr1:226555125-226555410(-)$1	285	79	96	12.4080
AGGCAAGAAAAGGCCAA	chr5:31511070-31511359(-)$1	289	148	165	14.1277
AGUCUCACACCUGACUC	chr14:102471432-102471659(+)$1	227	144	161	14.7282
GGCGUAAACAUCCGUCU	chr17:1580189-1580399(-)$1	210	155	172	13.1562
UGCUGUGGUUCGAGCAG	chr21:33719236-33719496(-)$1	260	97	114	13.7987
GGCUUUAUAAGCGGGCG	chr8:125551383-125551629(+)$1	246	96	113	11.8986
GUCUGUAUACGAAGAUC	chr17:40034258-40034506(-)$1	248	57	74	12.4080
AGCACCCACAUCUGUUG	chr9:35725127-35725367(-)$1	240	218	235	13.6319
UGGCUGGGCAUCGCCAU	chr6:31750282-31750501(-)$1	219	51	68	13.6319
UGCCUGGAGGAUGGCGG	chr10:103912048-103912320(+)$1	272	109	126	14.3484
AUAGACUCCAAACUGAA	chr10:75842157-75842403(+)$1	246	87	104	13.9218
GGCCAUGCAGCAGGCCG	chr7:128477180-128477406(+)$1	226	91	108	14.3484
GGCCUGAGCGCUGGUCU	chr2:109335995-109336231(+)$1	236	19	36	13.6319
ACAAGGCAUAAAUUGUG	chr3:184040879-184041095(+)$1	216	32	49	12.4080
AUGCCCAGAGCUGCACC	chr1:46751508-46751782(-)$1	274	190	207	13.7126
GAUCCCUUCCCAGAUCU	chr3:184035135-184035368(+)$1	233	92	109	14.7282
CUCAAGCGUGAAUGAGU	chr1:6659370-6659614(-)$1	244	148	165	13.6319
GCAGUGGUCAUUCUGCA	chr3:184040097-184040337(+)$1	240	189	206	15.0931
ACUAUGACCGGCUGGCU	chr7:98606023-98606279(+)$1	256	108	125	13.8116
AUGCGCAUCAAAGUCAU	chr9:131755375-131755642(+)$1	267	193	210	13.9478
UGCAGGUCAAAGUGCAA	chrX:153587254-153587466(-)$1	212	88	105	13.6319
UUCCCUGGUAUAGGAAU	chr3:184021377-184021624(+)$1	247	40	57	14.3484
AUAGAGUGUUUACUAGA	chr2:48031948-48032214(+)$1	266	173	190	13.9992

#DB
((((........)))..	chr3:49063664-49063926(-)$1	1	92	109	13.4294
((((........)))).	chr8:144992845-144993102(-)$1	1	201	218	15.0931
((((........)))))	chr10:75848853-75849085(+)$1	1	56	73	14.8476
((((........)))).	chr17:1564484-1564740(-)$1	1	155	172	14.3484
.(((........)))..	chrX:153590938-153591157(-)$1	1	9	26	13.8116
((((........)))))	chrX:153588805-153589023(-)$1	1	26	43	12.9889
((((........)))).	chr17:57758956-57759209(+)$1	1	94	111	14.3484
((((........)))))	chr12:57003583-57003829(-)$1	1	22	39	12.4080
.(((........)))))	chr12:69201990-69202373(+)$1	1	234	251	13.8978
((((........)))).	chr17:8396087-8396361(-)$1	1	122	139	15.0931
((((........)))).	chr3:184025577-184025833(+)$1	1	119	136	15.0454
((((........)))).	chr9:134363247-134363507(+)$1	1	148	165	15.0931
((((........)))).	chr1:6661756-6661972(-)$1	1	9	26	15.0931
((((........)))))	chr5:138163112-138163372(+)$1	1	32	49	14.7282
.(((........)))..	chr2:217002789-217003002(+)$1	1	59	76	13.7095
((((........)))))	chr3:184044947-184045222(+)$1	1	122	139	14.0927
((((........))).)	chr3:184043043-184043255(+)$1	1	5	22	13.7740
((((........)))).	chr3:184035168-184035386(+)$1	1	59	76	14.3484
.(((........)))..	chr2:217024759-217024985(+)$1	1	186	203	13.9992
((((........)))))	chr2:96958953-96959162(-)$1	1	53	70	12.4080
((((........)))).	chr5:149758710-149758994(+)$1	1	203	220	14.3484
((((........)))))	chr1:202711452-202711733(-)$1	1	56	73	12.4080
((((........)))))	chr21:47693236-47693473(-)$1	1	192	209	13.6319
.(((........))).)	chr1:160276852-160277131(-)$1	1	233	250	13.6868
((((........)))))	chrX:153588056-153588276(-)$1	1	49	66	13.6319
((.(........)))))	chr19:7706535-7706838(+)$1	1	208	225	12.5412
((((........)))).	chr14:102506472-102506693(+)$1	1	175	192	15.1429
((((........))))(	chr6:31753360-31753608(-)$1	1	85	102	14.8438
((((........)))))	chr11:65835518-65835809(+)$1	1	273	290	13.6319
((((........)))..	chr19:11141375-11141625(+)$1	1	23	40	13.7402
(..(........)..))	chr2:96956126-96956352(-)$1	1	123	140	12.6247
((((........)))).	chr16:29808174-29808456(+)$1	1	202	219	14.3484
((((........)))).	chr18:2931160-2931532(-)$1	1	334	351	15.0931
((((........)))).	chr1:220208182-220208423(-)$1	1	179	196	15.1429
((((........)))))	chr19:11098436-11098693(+)$1	1	206	223	13.6319
((((........)))).	chr8:48839659-48839900(-)$1	1	9	26	14.3866
((((........)))))	chr1:19431004-19431254(-)$1	1	174	191	13.6319
((((........)))))	chr2:10583519-10583789(-)$1	1	137	154	13.6487
((((........)))).	chr21:47676679-47676954(-)$1	1	47	64	14.3484
((((........)))).	chr12:120588921-120589168(-)$1	1	49	66	15.0931
((((........)))))	chr1:226555125-226555410(-)$1	1	79	96	12.4080
.(((........)))..	chr5:31511070-31511359(-)$1	1	148	165	14.1277
((((........)))))	chr14:102471432-102471659(+)$1	1	144	161	14.7282
((((........)))))	chr17:1580189-1580399(-)$1	1	155	172	13.1562
.(((........)))))	chr21:33719236-33719496(-)$1	1	97	114	13.7987
(.((........)).))	chr8:125551383-125551629(+)$1	1	96	113	11.8986
((((........)))))	chr17:40034258-40034506(-)$1	1	57	74	12.4080
((((........)))))	chr9:35725127-35725367(-)$1	1	218	235	13.6319
((((........)))))	chr6:31750282-31750501(-)$1	1	51	68	13.6319
((((........)))).	chr10:103912048-103912320(+)$1	1	109	126	14.3484
.(((........)))..	chr10:75842157-75842403(+)$1	1	87	104	13.9218
((((........)))).	chr7:128477180-128477406(+)$1	1	91	108	14.3484
((((........)))))	chr2:109335995-109336231(+)$1	1	19	36	13.6319
((((........)))))	chr3:184040879-184041095(+)$1	1	32	49	12.4080
.(((........))).)	chr1:46751508-46751782(-)$1	1	190	207	13.7126
((((........)))))	chr3:184035135-184035368(+)$1	1	92	109	14.7282
((((........)))))	chr1:6659370-6659614(-)$1	1	148	165	13.6319
((((........)))).	chr3:184040097-184040337(+)$1	1	189	206	15.0931
.(((........)))..	chr7:98606023-98606279(+)$1	1	108	125	13.8116
((((........).)))	chr9:131755375-131755642(+)$1	1	193	210	13.9478
((((........)))))	chrX:153587254-153587466(-)$1	1	88	105	13.6319
((((........)))).	chr3:184021377-184021624(+)$1	1	40	57	14.3484
.(((........)))..	chr2:48031948-48032214(+)$1	1	173	190	13.9992

#PSSM
d : 0.46	e : 0.15	f : 0.11	[ : 0.07	c : 0.04	! : 0.03	" : 0.03	# : 0.03	b : 0.01	g : 0.01	= : 0.01	
d : 0.44	c : 0.22	e : 0.15	f : 0.11	g : 0.01	! : 0.01	= : 0.01	[ : 0.01	
d : 0.44	c : 0.22	e : 0.15	f : 0.09	g : 0.01	[ : 0.01	! : 0.01	= : 0.01	b : 0.01	
d : 0.42	c : 0.22	e : 0.15	f : 0.09	a : 0.04	g : 0.01	= : 0.01	b : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.42	c : 0.22	e : 0.15	f : 0.09	a : 0.04	g : 0.01	= : 0.01	b : 0.01	
d : 0.42	c : 0.22	e : 0.15	f : 0.11	g : 0.01	2 : 0.01	= : 0.01	b : 0.01	] : 0.01	
d : 0.44	c : 0.22	e : 0.15	f : 0.11	g : 0.01	2 : 0.01	= : 0.01	] : 0.01	
d : 0.47	e : 0.15	f : 0.11	2 : 0.07	] : 0.04	3 : 0.04	c : 0.03	g : 0.01	= : 0.01	4 : 0.01	
e : 0.17	: : 0.14	] : 0.11	f : 0.11	2 : 0.07	3 : 0.07	d : 0.06	b : 0.06	c : 0.04	g : 0.03	4 : 0.03	C : 0.01	5 : 0.01	J : 0.01	= : 0.01	

#score	877.4704557056334
#seq	63
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_CDS_m2_run1.txt

#BEAR
g[bbcccooooooccc88	chr20:62597552-62597775(-)$1	223	65	83	8.4136
ba[ddddmmmmdddd]a3	chr17:27013637-27013892(+)$1	255	22	40	6.7015
f[eeeeeooooooeeeee	chr5:149199896-149200204(+)$1	308	83	101	10.7095
ccc[cccooooooccc33	chr3:127872417-127872700(+)$1	283	180	198	9.5167
a[eeeeeooooooeeeee	chr21:33755670-33755927(-)$1	257	200	218	10.9140
bb[ddddoooooodddd3	chr9:19378796-19379003(-)$1	207	140	158	12.1571
iiiiiiiooooooiiiii	chr6:4116015-4116258(-)$1	243	173	191	9.0841
cceeeeeooooooeeeee	chr11:65402390-65402690(+)$1	300	53	71	10.6445
eee!!bboooooobbeee	chr12:111885229-111885448(+)$1	219	101	119	8.6726
ee:ddddoooooodddd:	chr9:19378766-19378983(-)$1	217	120	138	10.8794
::eeeeeooooooeeeee	chr12:56705012-56705257(-)$1	245	163	181	9.2554
dddd!!aooooooa]ddd	chr12:120600659-120600877(-)$1	218	198	216	9.8384
"""ddddllldddddddd	chr22:38864146-38864387(+)$1	241	41	59	7.2730
eeeeeeeooooooeeeee	chr12:56522137-56522375(+)$1	238	81	99	10.6263
:::ddddoooooodddd:	chr11:77780878-77781164(-)$1	286	259	277	9.5085
d!!ddddmmmmddddddd	chr12:120600773-120601011(-)$1	238	7	25	7.2190
bdddd[aooooooa]ddd	chr22:19711290-19711563(+)$1	273	223	241	10.1939
:::ddddoooooodddd:	chr8:144102632-144102864(+)$1	232	92	110	9.5085
b!!ddddnnnnndddd22	chr6:32942411-32942625(+)$1	214	38	56	7.2761
:a[ddddoooooodddd]	chr6:35438405-35438619(+)$1	214	108	126	11.8308
da[ddddoooooodddd]	chr6:35438378-35438582(+)$1	204	135	153	12.3905
gggggggooooooggggg	chr6:74227857-74228064(-)$1	207	25	43	9.0540
###ddddoooooodddd5	chr6:4115994-4116215(-)$1	221	179	197	11.7492
:::ddddoooooodddd:	chr8:144102630-144102832(+)$1	202	94	112	9.5085
eddddcccooooooccc]	chr9:80923376-80923595(+)$1	219	189	207	8.7448
g[eeeeeooooooeeeee	chr11:75111730-75111939(+)$1	209	181	199	10.8248
d!!ddddmmmmddddddd	chr9:140446425-140446714(+)$1	289	54	72	7.2190
ee[ddddoooooodddde	chr19:42753699-42753975(-)$1	276	23	41	12.2260
g[eeeeeooooooeeeee	chr11:75111739-75111951(+)$1	212	172	190	10.8248
ee:ddddoooooodddd:	chr9:19378783-19378993(-)$1	210	130	148	10.8794
ee:ddddoooooodddd:	chr9:19378710-19378941(-)$1	231	78	96	10.8794
gggggggooooooggggg	chr6:74227864-74228069(-)$1	205	30	48	9.0540
c[eeeeeooooooeeeee	chr2:132249347-132249629(-)$1	282	259	277	10.8807
cc[ddddooooooddddc	chr17:57756765-57756981(+)$1	216	108	126	12.1436
cc[ddddoooooodddd2	chr22:38864098-38864346(+)$1	248	53	71	12.2223
eeee[bboooooobb]ee	chr8:48874560-48874774(+)$1	214	157	175	8.6168
ee:ddddoooooodddd:	chr9:19378803-19379010(-)$1	207	147	165	10.8794
a!!ddddmmmmdddd]a]	chr1:47124264-47124510(-)$1	246	119	137	6.9563
ee:ddddoooooodddd:	chr9:19378741-19378949(-)$1	208	86	104	10.8794
b[dddd[aooooooa]dd	chr7:103151284-103151528(-)$1	244	120	138	9.5828
b!!eeeeeooooooeeee	chr7:2275086-2275300(-)$1	214	101	119	9.4725
cc[ddddoooooodddd]	chr11:86048369-86048676(+)$1	307	8	26	12.4035
::eeeeeooooooeeeee	chr9:131733051-131733332(+)$1	281	239	257	9.2554
ee:ddddoooooodddd:	chr9:19378793-19378996(-)$1	203	133	151	10.8794
bb[ddddoooooodddd3	chr9:19378810-19379016(-)$1	206	153	171	12.1571
ee:ddddoooooodddd:	chr9:19378749-19378959(-)$1	210	96	114	10.8794
c[eeeeeooooooeeeee	chr2:130940245-130940449(+)$1	204	181	199	10.8807

#otherMatches

#Seq PSSM
CCAAACCCAUUACGGUAA	chr20:62597552-62597775(-)$1	223	65	83	8.4136
UCAUCCCACCAGGGACGC	chr17:27013637-27013892(+)$1	255	22	40	6.7015
CUUCCUGUCUCCUCAGGG	chr5:149199896-149200204(+)$1	308	83	101	10.7095
AGCCACUGCUUCAGGUCA	chr3:127872417-127872700(+)$1	283	180	198	9.5167
AGGGGACCACAGUGUCUC	chr21:33755670-33755927(-)$1	257	200	218	10.9140
GCAGGGUGUCUUGACCCA	chr9:19378796-19379003(-)$1	207	140	158	12.1571
CAUGUCCAAGGAAGGAUG	chr6:4116015-4116258(-)$1	243	173	191	9.0841
CCUGGAGCCCUUCCUCUA	chr11:65402390-65402690(+)$1	300	53	71	10.6445
UUUCAGGGGAUAGCCAAG	chr12:111885229-111885448(+)$1	219	101	119	8.6726
GCAGGGUGUCUUGACCCA	chr9:19378766-19378983(-)$1	217	120	138	10.8794
GAACUACGUACGUGUAGU	chr12:56705012-56705257(-)$1	245	163	181	9.2554
GGAUGACCACACAGAGUC	chr12:120600659-120600877(-)$1	218	198	216	9.8384
AAGUUUCCUAGAAGUUUG	chr22:38864146-38864387(+)$1	241	41	59	7.2730
GGGGCCAACCUGCUGGCC	chr12:56522137-56522375(+)$1	238	81	99	10.6263
CAUGAGUACUCUGACUCU	chr11:77780878-77781164(-)$1	286	259	277	9.5085
CUACGUGCCUCCACGGGU	chr12:120600773-120601011(-)$1	238	7	25	7.2190
CCGACCGCCUUCCCUGUC	chr22:19711290-19711563(+)$1	273	223	241	10.1939
CCGCAGCCAGCUCGCUGA	chr8:144102632-144102864(+)$1	232	92	110	9.5085
UACCUACACAAGGUAGUG	chr6:32942411-32942625(+)$1	214	38	56	7.2761
AGCGCCUAUAUUAAGGCA	chr6:35438405-35438619(+)$1	214	108	126	11.8308
AGCGCCUAUAUUAAGGCA	chr6:35438378-35438582(+)$1	204	135	153	12.3905
UAAAGUCAUUUGAGACUU	chr6:74227857-74228064(-)$1	207	25	43	9.0540
UAAAUAAGCUUCAUUGUG	chr6:4115994-4116215(-)$1	221	179	197	11.7492
CCGCAGCCAGCUCGCUGA	chr8:144102630-144102832(+)$1	202	94	112	9.5085
UACAUUUUAAAAUAAAAC	chr9:80923376-80923595(+)$1	219	189	207	8.7448
GCUAAGUUGGuuuauuua	chr11:75111730-75111939(+)$1	209	181	199	10.8248
uggccgggUUCCCGGGGC	chr9:140446425-140446714(+)$1	289	54	72	7.2190
AGAGGGUCUACAUGCCCC	chr19:42753699-42753975(-)$1	276	23	41	12.2260
GCUAAGUUGGuuuauuua	chr11:75111739-75111951(+)$1	212	172	190	10.8248
GCAGGGUGUCUUGACCCA	chr9:19378783-19378993(-)$1	210	130	148	10.8794
GCAGGGUGUCUUGACCCA	chr9:19378710-19378941(-)$1	231	78	96	10.8794
UAAAGUCAUUUGAGACUU	chr6:74227864-74228069(-)$1	205	30	48	9.0540
CGUGGCCCUGAGUGGCCA	chr2:132249347-132249629(-)$1	282	259	277	10.8807
UGACCAGGUAACAUUGGC	chr17:57756765-57756981(+)$1	216	108	126	12.1436
GGGGCCGGAGACGUGGCA	chr22:38864098-38864346(+)$1	248	53	71	12.2223
AGAGGCCUGACCUGGGCU	chr8:48874560-48874774(+)$1	214	157	175	8.6168
GCAGGGUGUCUUGACCCA	chr9:19378803-19379010(-)$1	207	147	165	10.8794
CAGUCUGUGAACAGAGGA	chr1:47124264-47124510(-)$1	246	119	137	6.9563
GCAGGGUGUCUUGACCCA	chr9:19378741-19378949(-)$1	208	86	104	10.8794
UUCUGUGACUCCCCUGAU	chr7:103151284-103151528(-)$1	244	120	138	9.5828
AUCCCAGCUCUCCUGUUG	chr7:2275086-2275300(-)$1	214	101	119	9.4725
CAAGUUUAAUUUGAAAUG	chr11:86048369-86048676(+)$1	307	8	26	12.4035
UAAUAAUGUAAUAGUUAU	chr9:131733051-131733332(+)$1	281	239	257	9.2554
GCAGGGUGUCUUGACCCA	chr9:19378793-19378996(-)$1	203	133	151	10.8794
GCAGGGUGUCUUGACCCA	chr9:19378810-19379016(-)$1	206	153	171	12.1571
GCAGGGUGUCUUGACCCA	chr9:19378749-19378959(-)$1	210	96	114	10.8794
CGUGGCCCUGAGUGGCCA	chr2:130940245-130940449(+)$1	204	181	199	10.8807

#DB
(.(((((......)))..	chr20:62597552-62597775(-)$1	1	65	83	8.4136
((.((((....)))).).	chr17:27013637-27013892(+)$1	1	22	40	6.7015
(.(((((......)))))	chr5:149199896-149200204(+)$1	1	83	101	10.7095
(((.(((......)))..	chr3:127872417-127872700(+)$1	1	180	198	9.5167
(.(((((......)))))	chr21:33755670-33755927(-)$1	1	200	218	10.9140
((.((((......)))).	chr9:19378796-19379003(-)$1	1	140	158	12.1571
(((((((......)))))	chr6:4116015-4116258(-)$1	1	173	191	9.0841
(((((((......)))))	chr11:65402390-65402690(+)$1	1	53	71	10.6445
(((..((......)))))	chr12:111885229-111885448(+)$1	1	101	119	8.6726
)).((((......)))).	chr9:19378766-19378983(-)$1	1	120	138	10.8794
..(((((......)))))	chr12:56705012-56705257(-)$1	1	163	181	9.2554
((((..(......).)))	chr12:120600659-120600877(-)$1	1	198	216	9.8384
...((((...))))))))	chr22:38864146-38864387(+)$1	1	41	59	7.2730
))(((((......)))))	chr12:56522137-56522375(+)$1	1	81	99	10.6263
...((((......)))).	chr11:77780878-77781164(-)$1	1	259	277	9.5085
(..((((....)))))))	chr12:120600773-120601011(-)$1	1	7	25	7.2190
)((((.(......).)))	chr22:19711290-19711563(+)$1	1	223	241	10.1939
...((((......)))).	chr8:144102632-144102864(+)$1	1	92	110	9.5085
(..((((.....))))..	chr6:32942411-32942625(+)$1	1	38	56	7.2761
.(.((((......)))).	chr6:35438405-35438619(+)$1	1	108	126	11.8308
)(.((((......)))).	chr6:35438378-35438582(+)$1	1	135	153	12.3905
(((((((......)))))	chr6:74227857-74228064(-)$1	1	25	43	9.0540
...((((......)))).	chr6:4115994-4116215(-)$1	1	179	197	11.7492
...((((......)))).	chr8:144102630-144102832(+)$1	1	94	112	9.5085
((((((((......))).	chr9:80923376-80923595(+)$1	1	189	207	8.7448
(.(((((......)))))	chr11:75111730-75111939(+)$1	1	181	199	10.8248
(..((((....)))))))	chr9:140446425-140446714(+)$1	1	54	72	7.2190
((.((((......)))))	chr19:42753699-42753975(-)$1	1	23	41	12.2260
(.(((((......)))))	chr11:75111739-75111951(+)$1	1	172	190	10.8248
)).((((......)))).	chr9:19378783-19378993(-)$1	1	130	148	10.8794
)).((((......)))).	chr9:19378710-19378941(-)$1	1	78	96	10.8794
(((((((......)))))	chr6:74227864-74228069(-)$1	1	30	48	9.0540
(.(((((......)))))	chr2:132249347-132249629(-)$1	1	259	277	10.8807
((.((((......)))))	chr17:57756765-57756981(+)$1	1	108	126	12.1436
((.((((......)))).	chr22:38864098-38864346(+)$1	1	53	71	12.2223
((((.((......)).))	chr8:48874560-48874774(+)$1	1	157	175	8.6168
)).((((......)))).	chr9:19378803-19379010(-)$1	1	147	165	10.8794
(..((((....)))).).	chr1:47124264-47124510(-)$1	1	119	137	6.9563
)).((((......)))).	chr9:19378741-19378949(-)$1	1	86	104	10.8794
(.((((.(......).))	chr7:103151284-103151528(-)$1	1	120	138	9.5828
(..(((((......))))	chr7:2275086-2275300(-)$1	1	101	119	9.4725
((.((((......)))).	chr11:86048369-86048676(+)$1	1	8	26	12.4035
..(((((......)))))	chr9:131733051-131733332(+)$1	1	239	257	9.2554
)).((((......)))).	chr9:19378793-19378996(-)$1	1	133	151	10.8794
((.((((......)))).	chr9:19378810-19379016(-)$1	1	153	171	12.1571
)).((((......)))).	chr9:19378749-19378959(-)$1	1	96	114	10.8794
(.(((((......)))))	chr2:130940245-130940449(+)$1	1	181	199	10.8807

#PSSM
e : 0.25	b : 0.14	c : 0.14	: : 0.12	g : 0.10	d : 0.08	a : 0.04	f : 0.02	i : 0.02	" : 0.02	# : 0.02	
e : 0.23	[ : 0.17	c : 0.10	: : 0.10	! : 0.10	a : 0.06	d : 0.06	b : 0.04	g : 0.04	i : 0.02	" : 0.02	# : 0.02	
e : 0.25	: : 0.21	[ : 0.19	! : 0.10	d : 0.08	g : 0.04	b : 0.02	c : 0.02	i : 0.02	" : 0.02	# : 0.02	
d : 0.61	e : 0.25	g : 0.04	b : 0.02	[ : 0.02	i : 0.02	! : 0.02	
d : 0.59	e : 0.23	c : 0.04	! : 0.04	g : 0.04	i : 0.02	[ : 0.02	
d : 0.55	e : 0.23	c : 0.06	b : 0.04	g : 0.04	i : 0.02	! : 0.02	[ : 0.02	
d : 0.53	e : 0.23	c : 0.06	b : 0.04	a : 0.04	g : 0.04	i : 0.02	[ : 0.02	
o : 0.80	m : 0.08	l : 0.02	n : 0.02	c : 0.02	a : 0.02	e : 0.02	
o : 0.87	m : 0.08	l : 0.02	n : 0.02	
o : 0.87	m : 0.08	l : 0.02	n : 0.02	
o : 0.87	m : 0.08	d : 0.02	n : 0.02	
o : 0.87	d : 0.10	n : 0.02	
o : 0.87	d : 0.12	
d : 0.53	e : 0.21	o : 0.06	c : 0.04	b : 0.04	a : 0.04	g : 0.04	i : 0.02	
d : 0.53	e : 0.23	c : 0.06	b : 0.04	] : 0.04	g : 0.04	i : 0.02	a : 0.02	
d : 0.53	e : 0.25	] : 0.08	c : 0.06	g : 0.04	i : 0.02	
d : 0.53	e : 0.27	a : 0.04	g : 0.04	8 : 0.02	3 : 0.02	i : 0.02	2 : 0.02	c : 0.02	
e : 0.29	: : 0.21	d : 0.12	] : 0.10	3 : 0.08	2 : 0.04	g : 0.04	8 : 0.02	i : 0.02	5 : 0.02	c : 0.02	

#score	471.66915249899773
#seq	47
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_CDS_m3_run1.txt

#BEAR
dddbboooooobb]	chr17:28706460-28706716(+)$1	256	79	93	9.2270
dddddooooooddd	chr8:97506405-97506660(+)$1	255	134	148	10.0688
""cccooooooccc	chr19:39306455-39306726(-)$1	271	59	73	10.4773
fffffoooooofff	chr5:233570-233831(+)$1	261	110	124	9.9515
[ddddooooooddd	chr1:8926346-8926603(-)$1	257	62	76	10.3031
eeeeeooooooeee	chr14:101200758-101201031(+)$1	273	148	162	10.3211
fffffoooooofff	chrX:105278131-105278360(-)$1	229	95	109	9.9515
=====oooooo===	chr22:24236619-24236866(+)$1	247	138	152	10.1468
!!cccooooooccc	chr4:74275071-74275294(+)$1	223	75	89	10.6741
c[cccooooooccc	chr1:39456965-39457347(+)$1	382	69	83	10.5712
h[cccooooooccc	chr9:90345854-90346225(+)$1	371	269	283	10.3613
dddddooooooddd	chr19:8550654-8550934(+)$1	280	208	222	10.0688
fffffoooooofff	chr12:9227189-9227425(-)$1	236	188	202	9.9515
dd[bboooooobb]	chr9:124083454-124083716(+)$1	262	31	45	9.1953
fffffoooooofff	chr3:52836251-52836510(+)$1	259	53	67	9.9515
fffbboooooobb]	chr7:47342815-47343080(-)$1	265	108	122	9.3136
gggggooooooggg	chr2:219677286-219677531(+)$1	245	159	173	10.1627
!bb[aooooooa]b	chr3:133473258-133473527(+)$1	269	134	148	9.1621
c[cccooooooccc	chr1:2160044-2160333(+)$1	289	210	224	10.5712
eecccooooooccc	chr5:177019497-177019740(+)$1	243	206	220	10.5872
fffffoooooofff	chr2:217059541-217059763(+)$1	222	47	61	9.9515
"ddddooooooddd	chr10:7780518-7780757(+)$1	239	54	68	10.2140
f[cccooooooccc	chr4:155490307-155490556(+)$1	249	7	21	10.6012
""cccooooooccc	chrX:77380420-77380648(+)$1	228	116	130	10.4773
:ddddooooooddd	chr2:216300278-216300483(-)$1	205	140	154	9.2571
eeeeeooooooeee	chr19:50017484-50017743(+)$1	259	175	189	10.3211
:ddddooooooddd	chr17:64216757-64216960(-)$1	203	173	187	9.2571
gggggooooooggg	chr3:195794296-195794543(-)$1	247	10	24	10.1627
eeeeeooooooeee	chr19:47291039-47291319(-)$1	280	39	53	10.3211
Hddddooooooddd	chr11:865634-865926(+)$1	292	31	45	9.5860
ddd[aooooooadd	chr8:22273631-22273865(+)$1	234	166	180	10.0374
[ddddooooooddd	chr8:144991385-144991616(-)$1	231	71	85	10.3031
[ddddooooooddd	chr8:63951138-63951465(-)$1	327	244	258	10.3031
cc[bboooooobbc	chr14:24566113-24566354(+)$1	241	218	232	9.3418
fffffoooooofff	chr2:216287977-216288195(-)$1	218	144	158	9.9515
eeeeeooooooeee	chr21:46901776-46902004(+)$1	228	132	146	10.3211
eeeeeooooooeee	chr7:56087236-56087506(-)$1	270	235	249	10.3211
fffffoooooofff	chr11:115374933-115375231(-)$1	298	237	251	9.9515
fff[aooooooa]f	chrX:153589603-153589843(-)$1	240	195	209	9.9877
gggggooooooggg	chr4:155507121-155507347(-)$1	226	200	214	10.1627
$$cccooooooccc	chr20:34129780-34130034(+)$1	254	87	101	10.0303
ffcccooooooccc	chr3:133475025-133475247(+)$1	222	91	105	10.4876
e[cccooooooccc	chr14:94847324-94847543(-)$1	219	59	73	10.6311
eeeeeooooooeee	chr22:43023209-43023445(-)$1	236	164	178	10.3211
eeeeeooooooeee	chr1:12677209-12677502(-)$1	293	236	250	10.3211
eeeeeooooooeee	chr11:43876194-43876488(+)$1	294	261	275	10.3211
""cccooooooccc	chr1:43392604-43392847(-)$1	243	78	92	10.4773
fff[aooooooa]f	chr17:80708220-80708478(+)$1	258	112	126	9.9877
eeeeeooooooeee	chr1:109940271-109940599(-)$1	328	180	194	10.3211
!!cccooooooccc	chr19:11215795-11216091(+)$1	296	33	47	10.6741
ee[bboooooobb]	chr1:113456636-113456888(-)$1	252	179	193	9.4032
fff[aooooooaff	chr3:133474155-133474368(+)$1	213	133	147	10.0643
!ddddooooooddd	chr20:30738323-30738583(+)$1	260	47	61	10.2990
fffffoooooofff	chr2:217024716-217024983(+)$1	267	225	239	9.9515
eeeeeooooooeee	chr11:61036363-61036592(-)$1	229	195	209	10.3211
b[cccooooooccc	chr6:31749994-31750310(-)$1	316	144	158	10.3414
d[cccooooooccc	chr9:35060209-35060420(-)$1	211	120	134	10.4799
&ddddooooooddd	chr4:3526533-3526879(-)$1	346	30	44	9.5972
eeeeeooooooeee	chrX:152966237-152966515(-)$1	278	184	198	10.3211
hhhhhoooooohhh	chr4:74275930-74276136(+)$1	206	115	129	8.7591
eeeeeooooooeee	chr7:75615554-75615788(+)$1	234	193	207	10.3211
gggggooooooggg	chr17:1673218-1673438(+)$1	220	166	180	10.1627
:ddddooooooddd	chr2:216241138-216241414(-)$1	276	158	172	9.2571
fffffoooooofff	chr22:36661386-36661672(+)$1	286	269	283	9.9515
:ddddooooooddd	chr19:35758187-35758418(+)$1	231	96	110	9.2571
eeeeeooooooeee	chr5:132202456-132202683(+)$1	227	29	43	10.3211
[ddddooooooddd	chr9:140136078-140136322(+)$1	244	170	184	10.3031
cc[bboooooobb]	chr12:57038881-57039108(-)$1	227	97	111	9.2424

#otherMatches

#Seq PSSM
GCCUCAACCCCGAU	chr17:28706460-28706716(+)$1	256	79	93	9.2270
CCUGCGUGUCGGCG	chr8:97506405-97506660(+)$1	255	134	148	10.0688
CCUGAUCUCUUUCA	chr19:39306455-39306726(-)$1	271	59	73	10.4773
CGAUACGCCCCUGU	chr5:233570-233831(+)$1	261	110	124	9.9515
GCGGUUCUCAUGCU	chr1:8926346-8926603(-)$1	257	62	76	10.3031
CCGGUGCAGCAGCC	chr14:101200758-101201031(+)$1	273	148	162	10.3211
UUCUGGACUCACAG	chrX:105278131-105278360(-)$1	229	95	109	9.9515
AAGCCCCCCCAGGU	chr22:24236619-24236866(+)$1	247	138	152	10.1468
AGCUGCUUUUACAG	chr4:74275071-74275294(+)$1	223	75	89	10.6741
CCCUGGCCCCUCAG	chr1:39456965-39457347(+)$1	382	69	83	10.5712
GAAUCAUUGAAGAU	chr9:90345854-90346225(+)$1	371	269	283	10.3613
CAUGGGCCCUGCCA	chr19:8550654-8550934(+)$1	280	208	222	10.0688
GGAGGACCUGACCU	chr12:9227189-9227425(-)$1	236	188	202	9.9515
UUGCCUGAGCUGGG	chr9:124083454-124083716(+)$1	262	31	45	9.1953
AGCCUGACCUGGGG	chr3:52836251-52836510(+)$1	259	53	67	9.9515
GGCGCCUCCCAGCA	chr7:47342815-47343080(-)$1	265	108	122	9.3136
AUGGUUGGAAUGCC	chr2:219677286-219677531(+)$1	245	159	173	10.1627
AGAUGAACCAGCUU	chr3:133473258-133473527(+)$1	269	134	148	9.1621
UGCAGAAGACGCUG	chr1:2160044-2160333(+)$1	289	210	224	10.5712
CCAGCCUCUCAGCU	chr5:177019497-177019740(+)$1	243	206	220	10.5872
GGAUUGGGGUUGAU	chr2:217059541-217059763(+)$1	222	47	61	9.9515
UGUCUACGCAGGGG	chr10:7780518-7780757(+)$1	239	54	68	10.2140
UUGUUUCUGUCAAC	chr4:155490307-155490556(+)$1	249	7	21	10.6012
UCACCAUCAUAGGU	chrX:77380420-77380648(+)$1	228	116	130	10.4773
CAGGGAUGGGACCC	chr2:216300278-216300483(-)$1	205	140	154	9.2571
AGGAGCUCACCUUC	chr19:50017484-50017743(+)$1	259	175	189	10.3211
UUCCCUCUAUCGGG	chr17:64216757-64216960(-)$1	203	173	187	9.2571
CCUAGGCUCAUCUG	chr3:195794296-195794543(-)$1	247	10	24	10.1627
GGAGCCCAAGCGCU	chr19:47291039-47291319(-)$1	280	39	53	10.3211
CUCAGCCCGACCUG	chr11:865634-865926(+)$1	292	31	45	9.5860
GCGUGCGUCCCCCG	chr8:22273631-22273865(+)$1	234	166	180	10.0374
GGGCAAGGAGAUGU	chr8:144991385-144991616(-)$1	231	71	85	10.3031
UCGGUAAGGAGGCU	chr8:63951138-63951465(-)$1	327	244	258	10.3031
CAAGUACAAUAACU	chr14:24566113-24566354(+)$1	241	218	232	9.3418
UUGUCUUGUUUGAC	chr2:216287977-216288195(-)$1	218	144	158	9.9515
CCCAGGAAGGACUG	chr21:46901776-46902004(+)$1	228	132	146	10.3211
GGUGUAUUUCAGCA	chr7:56087236-56087506(-)$1	270	235	249	10.3211
CCACAGGUAGGUGU	chr11:115374933-115375231(-)$1	298	237	251	9.9515
GUAGAACCCACUGU	chrX:153589603-153589843(-)$1	240	195	209	9.9877
UACCAAAGAAGUGG	chr4:155507121-155507347(-)$1	226	200	214	10.1627
AAGCAGUUCGAUGC	chr20:34129780-34130034(+)$1	254	87	101	10.0303
UUGACCCAGGUGUC	chr3:133475025-133475247(+)$1	222	91	105	10.4876
CUCCAGGCAAAUGG	chr14:94847324-94847543(-)$1	219	59	73	10.6311
CUCAGCUUACCCUG	chr22:43023209-43023445(-)$1	236	164	178	10.3211
CCCGCCAAGCUGCG	chr1:12677209-12677502(-)$1	293	236	250	10.3211
UGGGGUUUCUUUCC	chr11:43876194-43876488(+)$1	294	261	275	10.3211
AAGUGACAAGACAC	chr1:43392604-43392847(-)$1	243	78	92	10.4773
CCGCGUUGCUCCAC	chr17:80708220-80708478(+)$1	258	112	126	9.9877
CAGCCAGGACCGGC	chr1:109940271-109940599(-)$1	328	180	194	10.3211
UAUAGAAUGGGCUG	chr19:11215795-11216091(+)$1	296	33	47	10.6741
AUCUCUUCAUUGGC	chr1:113456636-113456888(-)$1	252	179	193	9.4032
GUGUGGCUGCUCCA	chr3:133474155-133474368(+)$1	213	133	147	10.0643
UGGUGAUCAGCCAC	chr20:30738323-30738583(+)$1	260	47	61	10.2990
AGAGUGCAUCAAUU	chr2:217024716-217024983(+)$1	267	225	239	9.9515
GCAGGUAAUCCCCU	chr11:61036363-61036592(-)$1	229	195	209	10.3211
CGGGGAGAUGGCCC	chr6:31749994-31750310(-)$1	316	144	158	10.3414
AAUAGGCUGAACUA	chr9:35060209-35060420(-)$1	211	120	134	10.4799
CGAGGUCAGUUUCU	chr4:3526533-3526879(-)$1	346	30	44	9.5972
GAGAGCCCGGCCUC	chrX:152966237-152966515(-)$1	278	184	198	10.3211
UGAAGGGAAGGCUU	chr4:74275930-74276136(+)$1	206	115	129	8.7591
CAUCAAGAAACUGA	chr7:75615554-75615788(+)$1	234	193	207	10.3211
AGGCCCCCUGUGGC	chr17:1673218-1673438(+)$1	220	166	180	10.1627
CCAUCAAGCCAGAU	chr2:216241138-216241414(-)$1	276	158	172	9.2571
GGGUGAGAACAUAU	chr22:36661386-36661672(+)$1	286	269	283	9.9515
CGGGCCUACAUGCC	chr19:35758187-35758418(+)$1	231	96	110	9.2571
UGGGGAUGGACCCC	chr5:132202456-132202683(+)$1	227	29	43	10.3211
AACGCAUCAACGUG	chr9:140136078-140136322(+)$1	244	170	184	10.3031
CCCUGGAAGUGCAA	chr12:57038881-57039108(-)$1	227	97	111	9.2424

#DB
(((((......)).	chr17:28706460-28706716(+)$1	1	79	93	9.2270
(((((......)))	chr8:97506405-97506660(+)$1	1	134	148	10.0688
..(((......)))	chr19:39306455-39306726(-)$1	1	59	73	10.4773
(((((......)))	chr5:233570-233831(+)$1	1	110	124	9.9515
.((((......)))	chr1:8926346-8926603(-)$1	1	62	76	10.3031
(((((......)))	chr14:101200758-101201031(+)$1	1	148	162	10.3211
(((((......)))	chrX:105278131-105278360(-)$1	1	95	109	9.9515
(((((......)))	chr22:24236619-24236866(+)$1	1	138	152	10.1468
..(((......)))	chr4:74275071-74275294(+)$1	1	75	89	10.6741
(.(((......)))	chr1:39456965-39457347(+)$1	1	69	83	10.5712
(.(((......)))	chr9:90345854-90346225(+)$1	1	269	283	10.3613
(((((......)))	chr19:8550654-8550934(+)$1	1	208	222	10.0688
(((((......)))	chr12:9227189-9227425(-)$1	1	188	202	9.9515
((.((......)).	chr9:124083454-124083716(+)$1	1	31	45	9.1953
(((((......)))	chr3:52836251-52836510(+)$1	1	53	67	9.9515
(((((......)).	chr7:47342815-47343080(-)$1	1	108	122	9.3136
(((((......)))	chr2:219677286-219677531(+)$1	1	159	173	10.1627
.((.(......).)	chr3:133473258-133473527(+)$1	1	134	148	9.1621
(.(((......)))	chr1:2160044-2160333(+)$1	1	210	224	10.5712
(((((......)))	chr5:177019497-177019740(+)$1	1	206	220	10.5872
(((((......)))	chr2:217059541-217059763(+)$1	1	47	61	9.9515
.((((......)))	chr10:7780518-7780757(+)$1	1	54	68	10.2140
(.(((......)))	chr4:155490307-155490556(+)$1	1	7	21	10.6012
..(((......)))	chrX:77380420-77380648(+)$1	1	116	130	10.4773
.((((......)))	chr2:216300278-216300483(-)$1	1	140	154	9.2571
(((((......)))	chr19:50017484-50017743(+)$1	1	175	189	10.3211
.((((......)))	chr17:64216757-64216960(-)$1	1	173	187	9.2571
(((((......)))	chr3:195794296-195794543(-)$1	1	10	24	10.1627
(((((......)))	chr19:47291039-47291319(-)$1	1	39	53	10.3211
(((((......)))	chr11:865634-865926(+)$1	1	31	45	9.5860
(((.(......)))	chr8:22273631-22273865(+)$1	1	166	180	10.0374
.((((......)))	chr8:144991385-144991616(-)$1	1	71	85	10.3031
.((((......)))	chr8:63951138-63951465(-)$1	1	244	258	10.3031
((.((......)))	chr14:24566113-24566354(+)$1	1	218	232	9.3418
(((((......)))	chr2:216287977-216288195(-)$1	1	144	158	9.9515
(((((......)))	chr21:46901776-46902004(+)$1	1	132	146	10.3211
(((((......)))	chr7:56087236-56087506(-)$1	1	235	249	10.3211
(((((......)))	chr11:115374933-115375231(-)$1	1	237	251	9.9515
(((.(......).)	chrX:153589603-153589843(-)$1	1	195	209	9.9877
(((((......)))	chr4:155507121-155507347(-)$1	1	200	214	10.1627
..(((......)))	chr20:34129780-34130034(+)$1	1	87	101	10.0303
(((((......)))	chr3:133475025-133475247(+)$1	1	91	105	10.4876
(.(((......)))	chr14:94847324-94847543(-)$1	1	59	73	10.6311
(((((......)))	chr22:43023209-43023445(-)$1	1	164	178	10.3211
(((((......)))	chr1:12677209-12677502(-)$1	1	236	250	10.3211
(((((......)))	chr11:43876194-43876488(+)$1	1	261	275	10.3211
..(((......)))	chr1:43392604-43392847(-)$1	1	78	92	10.4773
(((.(......).)	chr17:80708220-80708478(+)$1	1	112	126	9.9877
(((((......)))	chr1:109940271-109940599(-)$1	1	180	194	10.3211
..(((......)))	chr19:11215795-11216091(+)$1	1	33	47	10.6741
((.((......)).	chr1:113456636-113456888(-)$1	1	179	193	9.4032
(((.(......)))	chr3:133474155-133474368(+)$1	1	133	147	10.0643
.((((......)))	chr20:30738323-30738583(+)$1	1	47	61	10.2990
(((((......)))	chr2:217024716-217024983(+)$1	1	225	239	9.9515
(((((......)))	chr11:61036363-61036592(-)$1	1	195	209	10.3211
(.(((......)))	chr6:31749994-31750310(-)$1	1	144	158	10.3414
(.(((......)))	chr9:35060209-35060420(-)$1	1	120	134	10.4799
.((((......)))	chr4:3526533-3526879(-)$1	1	30	44	9.5972
(((((......)))	chrX:152966237-152966515(-)$1	1	184	198	10.3211
(((((......)))	chr4:74275930-74276136(+)$1	1	115	129	8.7591
(((((......)))	chr7:75615554-75615788(+)$1	1	193	207	10.3211
(((((......)))	chr17:1673218-1673438(+)$1	1	166	180	10.1627
.((((......)))	chr2:216241138-216241414(-)$1	1	158	172	9.2571
(((((......)))	chr22:36661386-36661672(+)$1	1	269	283	9.9515
.((((......)))	chr19:35758187-35758418(+)$1	1	96	110	9.2571
(((((......)))	chr5:132202456-132202683(+)$1	1	29	43	10.3211
.((((......)))	chr9:140136078-140136322(+)$1	1	170	184	10.3031
((.((......)).	chr12:57038881-57039108(-)$1	1	97	111	9.2424

#PSSM
e : 0.23	f : 0.22	d : 0.08	" : 0.05	[ : 0.05	! : 0.05	c : 0.05	g : 0.05	: : 0.05	h : 0.02	= : 0.01	H : 0.01	$ : 0.01	b : 0.01	& : 0.01	
d : 0.25	e : 0.22	f : 0.20	[ : 0.10	g : 0.05	" : 0.04	! : 0.02	c : 0.02	= : 0.01	b : 0.01	$ : 0.01	h : 0.01	
d : 0.23	c : 0.22	f : 0.19	e : 0.19	[ : 0.05	g : 0.05	= : 0.01	b : 0.01	h : 0.01	
c : 0.22	d : 0.20	e : 0.19	f : 0.13	b : 0.08	[ : 0.07	g : 0.05	= : 0.01	h : 0.01	
c : 0.22	d : 0.20	e : 0.19	f : 0.13	b : 0.08	a : 0.07	g : 0.05	= : 0.01	h : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.22	d : 0.20	e : 0.19	f : 0.13	b : 0.08	a : 0.07	g : 0.05	= : 0.01	h : 0.01	
d : 0.22	c : 0.22	e : 0.19	f : 0.14	b : 0.08	g : 0.05	] : 0.04	= : 0.01	h : 0.01	
c : 0.23	d : 0.22	e : 0.19	f : 0.17	] : 0.07	g : 0.05	= : 0.01	b : 0.01	h : 0.01	

#score	683.7773786794918
#seq	68
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_UTR_m1_run2.txt

#BEAR
===ccc[eeeeennnnneeeeeccc33	chr7:5778841-5779096(-)$1	255	105	132	13.8902
dd[ccc"""cccnnnnnccc]ccc]dd	chr16:2163178-2163436(-)$1	258	228	255	14.4332
!!bbccc[ddddnnnnndddd]ccc33	chr12:7024415-7024694(+)$1	279	130	157	13.5038
bb[iiiiiiiiiooooooiiiiiiiii	chr11:108012271-108012530(+)$1	259	206	233	10.0886
iiiiiiiii[bbnnnnnbbiiiiiiii	chr6:31924620-31924888(-)$1	268	9	36	14.1786
ff[bb!!eeeeennnnneeeee22bbf	chr15:43705394-43705683(-)$1	289	39	66	12.3185
iiiiiiii[cccnnnnnccc]iiiiii	chr11:61188590-61188851(-)$1	261	174	201	15.2184
eee"""ccc!!annnnna22ccc]eee	chr10:102286631-102286846(-)$1	215	13	40	12.7419
ee!!bb[eeeeennnnneeeeebb]ee	chr19:1808190-1808426(-)$1	236	201	228	12.3716
""bb[gggggggnnnnnggggggg333	chr7:926100-926379(+)$1	279	44	71	13.8884
"""bb"""cccooooooccc333bb33	chr5:176737403-176737672(-)$1	269	229	256	10.3913
::ccc[ccc[bbnnnnnbb]ccc]ccc	chr4:73984308-73984571(-)$1	263	47	74	11.1916
[ccc"""eeeeennnnneeeee]ccc]	chr9:98734090-98734364(+)$1	274	40	67	13.8058
hhhhhhhh[cccnnnnnccc]hhhhhh	chr22:20918600-20918872(+)$1	272	140	167	12.0273
hhhhhh"""cccnnnnnccc22hhhhh	chr17:37583870-37584146(-)$1	276	51	78	12.6249
ggbbbb!!ddddnnnnndddd333bb]	chr12:49495227-49495452(-)$1	225	137	164	12.8982
''ccc[a[ddddnnnnndddd]a]ccc	chr16:67200014-67200329(+)$1	315	18	45	12.4494
c[bb"""eeeeennnnneeeee22bbc	chr7:158456776-158456999(-)$1	223	148	175	12.7146
eeee[ccc!!bbnnnnnbb]ccc]eee	chr7:141310896-141311174(+)$1	278	84	111	12.6718
++ccc!!eeeeennnnneeeee22ccc	chr22:32002260-32002565(+)$1	305	254	281	12.2882
iiiiiiiii[bbnnnnnbb]iiiiiii	chr3:10122953-10123197(+)$1	244	183	210	14.1908
iiii[bbaddddnnnnndddd]a333b	chr10:99504378-99504627(+)$1	249	122	149	13.2081
g!!ccc!!ddddnnnnndddd22cccg	chr6:41904107-41904390(-)$1	283	100	127	13.8523
======"""cccnnnnnccc4444===	chr12:110764069-110764360(+)$1	291	212	239	15.5866
!!bb[a[eeeeennnnneeeee]a]bb	chr18:47802960-47803265(-)$1	305	224	251	13.0438
"""dddd[ddddnnnnndddd22dddd	chr10:70482159-70482411(+)$1	252	197	224	11.9360
[eeeee"""cccooooooccc333eee	chr7:139094277-139094501(+)$1	224	185	212	9.9337
$$ccc[ccccccnnnnnccc]ccc]cc	chr2:130910328-130910585(-)$1	257	151	178	13.9235
"""ccc[bb[bbnnnnnbb]bbccc33	chr15:89444847-89445139(-)$1	292	32	59	12.5808
ddiiiiiiiiiooooooiiiiiiiiie	chr16:74685848-74686138(-)$1	290	23	50	10.1545
ddd####bb!!annnnna22bb333dd	chr14:35872443-35872674(-)$1	231	3	30	12.0648
gggggg[a[cccnnnnnccc]a]gggg	chr17:17723227-17723488(-)$1	261	206	233	14.5720
ccc!!ccc[cccnnnnnccc]cccccc	chr17:80014577-80014852(+)$1	275	90	117	14.2536
============nnnnn==========	chr7:158723041-158723318(+)$1	277	94	121	15.4077
ccc[ffffff[annnnna]ffffffcc	chr17:72768070-72768396(-)$1	326	30	57	11.5291
dd[iiiiiiiiinnnnniiiiiiiiid	chr17:74732016-74732292(-)$1	276	163	190	14.3088
$$$$ccceeeeennnnneeeee]cccg	chr17:35981425-35981680(-)$1	255	50	77	12.6138
dd[bb####cccnnnnnccc22bb]dd	chr19:989888-990169(+)$1	281	70	97	13.1477
ee"""gggggggnnnnnggggggg555	chr6:126332266-126332548(+)$1	282	114	141	11.3196
dd[a[gggggggnnnnnggggggg]a]	chr2:242610038-242610290(+)$1	252	141	168	13.7941
eeeee[ccc[bbnnnnnbb]ccc]eee	chr8:124373746-124373987(-)$1	241	145	172	12.2741
bffffff[ddddnnnnndddd333fff	chr12:57118829-57119082(-)$1	253	32	59	12.2867
eeee[bb[ddddnnnnndddd]bb]ee	chr9:134358001-134358240(+)$1	239	152	179	12.0117
gggggggg[cccnnnnnccc]gggggg	chr12:51393057-51393312(-)$1	255	10	37	14.3462
ddd[dddd[cccnnnnnccc]dddd22	chr11:64569116-64569364(-)$1	248	60	87	11.9018
======="""ccclllccc22======	chr12:58026339-58026599(-)$1	260	217	244	10.0929
eeeee!!eeeeennnnneeeee4444e	chr6:33236280-33236515(-)$1	235	125	152	13.1153
b===========nnnnn==========	chr11:62378913-62379208(-)$1	295	19	46	15.1141
ffff[eeeee[annnnna]eeeee]ff	chr6:36568835-36569073(+)$1	238	81	108	11.8453
dddd[ccc[cccnnnnnccc]ccc22d	chr12:104742026-104742280(+)$1	254	181	208	13.3372
============nnnnn==========	chr20:31386150-31386409(+)$1	259	110	137	15.4077
eeeccc"""cccnnnnnccc333ccc]	chr15:43481294-43481571(+)$1	277	199	226	14.9041
bb!!eeeee[bbnnnnnbb]eeeee]b	chr1:161183783-161184088(+)$1	305	199	226	11.3494

#otherMatches

#Seq PSSM
GUUUCUAGGAAGCAAGAUUUCCAGAUG	chr7:5778841-5779096(-)$1	255	105	132	13.8902
UGGUCUUCAAUGUCAUUUAUCAGAGCG	chr16:2163178-2163436(-)$1	258	228	255	14.4332
UAUGGGGGCUCUGGAAGAGAGGCCCAG	chr12:7024415-7024694(+)$1	279	130	157	13.5038
UCUAGUUCUUAGAAUUGCCUAAGGAUU	chr11:108012271-108012530(+)$1	259	206	233	10.0886
GGUCCCUGGAGUGAUGUGCCCAGGGGC	chr6:31924620-31924888(-)$1	268	9	36	14.1786
GGACAGUGCCUGCCCAUCAGGUCAUGC	chr15:43705394-43705683(-)$1	289	39	66	12.3185
AAAGCAAUGAUUAAGUGGGUAGUUGCU	chr11:61188590-61188851(-)$1	261	174	201	15.2184
AGGUAUGGCGACUACCCGAAGCUCCCU	chr10:102286631-102286846(-)$1	215	13	40	12.7419
ugcaggugaggcguguugccuccucca	chr19:1808190-1808426(-)$1	236	201	228	12.3716
UUGCUGUCCUGAACAGGUCAGGGCUUU	chr7:926100-926379(+)$1	279	44	71	13.8884
CCAGGAUGCACAUCCAGGUGAGGCCCC	chr5:176737403-176737672(-)$1	269	229	256	10.3913
UUGUGGCUAGCAGCAAAUGGUGGACAC	chr4:73984308-73984571(-)$1	263	47	74	11.1916
CCUGCCCAAAGUUGAGUACUUUUCAGU	chr9:98734090-98734364(+)$1	274	40	67	13.8058
GCUGCAGCUCCAGCAGGUGGCGCUgca	chr22:20918600-20918872(+)$1	272	140	167	12.0273
GUGUUUGUAAUUUACCUGAUAAAGAUA	chr17:37583870-37584146(-)$1	276	51	78	12.6249
UGUGGCCAUCCACAUCCUGGAGCUGCU	chr12:49495227-49495452(-)$1	225	137	164	12.8982
CUGGCCGGCCAGCAGUUCUGGGCAGCC	chr16:67200014-67200329(+)$1	315	18	45	12.4494
GCAGAUAGUGCCUCAGUGGCAUCACUC	chr7:158456776-158456999(-)$1	223	148	175	12.7146
CCUUGGUAUUUCAGACAGAUUAUGAGG	chr7:141310896-141311174(+)$1	278	84	111	12.6718
AUAAGGAACCUAGAAAAUGGGUAACUU	chr22:32002260-32002565(+)$1	305	254	281	12.2882
GCUUUUUGCUUGGUAAGUAUGUGGGAA	chr3:10122953-10123197(+)$1	244	183	210	14.1908
UAGGUGCCCUGAUGAUUUCAGUGCCCG	chr10:99504378-99504627(+)$1	249	122	149	13.2081
GCUGGGUAGCUGGGCAGCAGCCUCUCC	chr6:41904107-41904390(-)$1	283	100	127	13.8523
UAAGUACUUUAUGAAAUGUGUUUUUAU	chr12:110764069-110764360(+)$1	291	212	239	15.5866
GACUGUCGAGGUGAGUGGCCUCCAGAG	chr18:47802960-47803265(-)$1	305	224	251	13.0438
CUGUAAUUGUUUGUGGGGGACUUGUUA	chr10:70482159-70482411(+)$1	252	197	224	11.9360
UGAUUUUAAAUUUUAGAUGGUGAUAAA	chr7:139094277-139094501(+)$1	224	185	212	9.9337
GUGUUCCCGGGAUGACUUCCUCGGCAG	chr2:130910328-130910585(-)$1	257	151	178	13.9235
GGAUGGAGCUGCUUUCUGUUGCCCAAG	chr15:89444847-89445139(-)$1	292	32	59	12.5808
GGUUGAAGUGAUAGGAUUUACUUCAAA	chr16:74685848-74686138(-)$1	290	23	50	10.1545
CUGUCUAGGAGGAGCAGCACCCAACCA	chr14:35872443-35872674(-)$1	231	3	30	12.0648
GCUGCUUGAGAUGCCCUGUUACUAGCA	chr17:17723227-17723488(-)$1	261	206	233	14.5720
GGGCAGCUGGGGGUGAGCCUGGGCCCC	chr17:80014577-80014852(+)$1	275	90	117	14.2536
CUCUUUUUAGGUCUGAUGCCUGGAGGG	chr7:158723041-158723318(+)$1	277	94	121	15.4077
CUGUCUUACGGUAAGAAAGUGUGAGCA	chr17:72768070-72768396(-)$1	326	30	57	11.5291
CUGCUCGGAGGUUACUCACCUUUGGGA	chr17:74732016-74732292(-)$1	276	163	190	14.3088
UUAUGAAAUAAUGACCAAUUGUAUUCU	chr17:35981425-35981680(-)$1	255	50	77	12.6138
GCGCCAAGGCCCCUGGCGGGAAGGGGC	chr19:989888-990169(+)$1	281	70	97	13.1477
CUUUUUCUUUCCCUUCAGGAAAGGCUA	chr6:126332266-126332548(+)$1	282	114	141	11.3196
UGCCAGCAAGUCAAAAAGGUUUGUAGC	chr2:242610038-242610290(+)$1	252	141	168	13.7941
CCUCUGAAGAUGAACAGCACUUUGAGA	chr8:124373746-124373987(-)$1	241	145	172	12.2741
CACAGUAAGUACUUUCUGUGCCGCUAC	chr12:57118829-57119082(-)$1	253	32	59	12.2867
GAGCGUUCUCUGAAAAACAGAAAGGGC	chr9:134358001-134358240(+)$1	239	152	179	12.0117
CUUCUCCAAGUGUUCUUUAUCUGGAGA	chr12:51393057-51393312(-)$1	255	10	37	14.3462
CCAGUCCUGAGAGGGGGUUUGGGGAGG	chr11:64569116-64569364(-)$1	248	60	87	11.9018
UGCAUUUUUUCCUGACAGGCUAGGUGU	chr12:58026339-58026599(-)$1	260	217	244	10.0929
CUUGGAGCAGCUACAGGAGCUGGAUGC	chr6:33236280-33236515(-)$1	235	125	152	13.1153
CUGGGGCUGCCUGAAAGGGGCAGUCCU	chr11:62378913-62379208(-)$1	295	19	46	15.1141
UUCUGCUUUUAGAUCUCCAAGAAGGAG	chr6:36568835-36569073(+)$1	238	81	108	11.8453
GUGGAUGCUGUUGCCAAGACUGCAAAC	chr12:104742026-104742280(+)$1	254	181	208	13.3372
UCCAGGUGUUUCUGUGUGGAGUGCCUG	chr20:31386150-31386409(+)$1	259	110	137	15.4077
GUUGCAUUUAUCGUGUAGAUCUUUGCU	chr15:43481294-43481571(+)$1	277	199	226	14.9041
AGCAGGGGAGCAGCGUUUGAUCCCCCC	chr1:161183783-161184088(+)$1	305	199	226	11.3494

#DB
((((((.(((((.....))))))))..	chr7:5778841-5779096(-)$1	1	105	132	13.8902
((.(((...(((.....))).))).))	chr16:2163178-2163436(-)$1	1	228	255	14.4332
..(((((.((((.....)))).)))..	chr12:7024415-7024694(+)$1	1	130	157	13.5038
((.(((((((((......)))))))))	chr11:108012271-108012530(+)$1	1	206	233	10.0886
(((((((((.((.....))))))))))	chr6:31924620-31924888(-)$1	1	9	36	14.1786
((.((..(((((.....)))))..)))	chr15:43705394-43705683(-)$1	1	39	66	12.3185
((((((((.(((.....))).))))))	chr11:61188590-61188851(-)$1	1	174	201	15.2184
(((...(((..(.....)..))).)))	chr10:102286631-102286846(-)$1	1	13	40	12.7419
((..((.(((((.....))))))).))	chr19:1808190-1808426(-)$1	1	201	228	12.3716
..((.(((((((.....)))))))...	chr7:926100-926379(+)$1	1	44	71	13.8884
...((...(((......)))...))..	chr5:176737403-176737672(-)$1	1	229	256	10.3913
..(((.(((.((.....)).))).)))	chr4:73984308-73984571(-)$1	1	47	74	11.1916
.(((...(((((.....))))).))).	chr9:98734090-98734364(+)$1	1	40	67	13.8058
((((((((.(((.....))).))))))	chr22:20918600-20918872(+)$1	1	140	167	12.0273
((((((...(((.....)))..)))))	chr17:37583870-37584146(-)$1	1	51	78	12.6249
((((((..((((.....))))...)).	chr12:49495227-49495452(-)$1	1	137	164	12.8982
..(((.(.((((.....)))).).)))	chr16:67200014-67200329(+)$1	1	18	45	12.4494
(.((...(((((.....)))))..)))	chr7:158456776-158456999(-)$1	1	148	175	12.7146
((((.(((..((.....)).))).)))	chr7:141310896-141311174(+)$1	1	84	111	12.6718
..(((..(((((.....)))))..)))	chr22:32002260-32002565(+)$1	1	254	281	12.2882
(((((((((.((.....)).)))))))	chr3:10122953-10123197(+)$1	1	183	210	14.1908
((((.(((((((.....)))).)...)	chr10:99504378-99504627(+)$1	1	122	149	13.2081
(..(((..((((.....))))..))))	chr6:41904107-41904390(-)$1	1	100	127	13.8523
((((((...(((.....)))....)))	chr12:110764069-110764360(+)$1	1	212	239	15.5866
..((.(.(((((.....))))).).))	chr18:47802960-47803265(-)$1	1	224	251	13.0438
...((((.((((.....))))..))))	chr10:70482159-70482411(+)$1	1	197	224	11.9360
.(((((...(((......)))...)))	chr7:139094277-139094501(+)$1	1	185	212	9.9337
..(((.((((((.....))).))).))	chr2:130910328-130910585(-)$1	1	151	178	13.9235
...(((.((.((.....)).)))))..	chr15:89444847-89445139(-)$1	1	32	59	12.5808
))(((((((((......)))))))))(	chr16:74685848-74686138(-)$1	1	23	50	10.1545
(((....((..(.....)..))...))	chr14:35872443-35872674(-)$1	1	3	30	12.0648
((((((.(.(((.....))).).))))	chr17:17723227-17723488(-)$1	1	206	233	14.5720
(((..(((.(((.....))).))))))	chr17:80014577-80014852(+)$1	1	90	117	14.2536
((((((((((((.....))))))))))	chr7:158723041-158723318(+)$1	1	94	121	15.4077
(((.((((((.(.....).))))))))	chr17:72768070-72768396(-)$1	1	30	57	11.5291
((.(((((((((.....))))))))))	chr17:74732016-74732292(-)$1	1	163	190	14.3088
....((((((((.....))))).))))	chr17:35981425-35981680(-)$1	1	50	77	12.6138
((.((....(((.....)))..)).))	chr19:989888-990169(+)$1	1	70	97	13.1477
((...(((((((.....)))))))...	chr6:126332266-126332548(+)$1	1	114	141	11.3196
((.(.(((((((.....))))))).).	chr2:242610038-242610290(+)$1	1	141	168	13.7941
(((((.(((.((.....)).))).)))	chr8:124373746-124373987(-)$1	1	145	172	12.2741
)((((((.((((.....))))...)))	chr12:57118829-57119082(-)$1	1	32	59	12.2867
((((.((.((((.....)))).)).))	chr9:134358001-134358240(+)$1	1	152	179	12.0117
((((((((.(((.....))).))))))	chr12:51393057-51393312(-)$1	1	10	37	14.3462
(((.((((.(((.....))).))))..	chr11:64569116-64569364(-)$1	1	60	87	11.9018
(((((((...(((...)))..))))))	chr12:58026339-58026599(-)$1	1	217	244	10.0929
(((((..(((((.....)))))....)	chr6:33236280-33236515(-)$1	1	125	152	13.1153
((((((((((((.....))))))))))	chr11:62378913-62379208(-)$1	1	19	46	15.1141
((((.(((((.(.....).))))).))	chr6:36568835-36569073(+)$1	1	81	108	11.8453
((((.(((.(((.....))).)))..)	chr12:104742026-104742280(+)$1	1	181	208	13.3372
((((((((((((.....))))))))))	chr20:31386150-31386409(+)$1	1	110	137	15.4077
((((((...(((.....)))...))).	chr15:43481294-43481571(+)$1	1	199	226	14.9041
((..(((((.((.....)).))))).)	chr1:161183783-161184088(+)$1	1	199	226	11.3494

#PSSM
d : 0.15	e : 0.15	= : 0.09	b : 0.07	i : 0.07	" : 0.07	g : 0.07	c : 0.05	! : 0.03	f : 0.03	[ : 0.03	h : 0.03	$ : 0.03	: : 0.01	' : 0.01	+ : 0.01	
e : 0.16	d : 0.15	= : 0.11	i : 0.07	" : 0.07	! : 0.05	f : 0.05	c : 0.05	g : 0.05	b : 0.03	h : 0.03	$ : 0.03	: : 0.01	' : 0.01	[ : 0.01	+ : 0.01	
e : 0.13	c : 0.13	= : 0.11	[ : 0.11	b : 0.09	i : 0.09	" : 0.07	! : 0.05	d : 0.05	h : 0.03	g : 0.03	f : 0.03	$ : 0.01	
c : 0.18	b : 0.15	i : 0.13	e : 0.09	= : 0.09	! : 0.05	" : 0.03	h : 0.03	d : 0.03	g : 0.03	[ : 0.03	f : 0.03	# : 0.01	$ : 0.01	a : 0.01	
c : 0.20	[ : 0.15	i : 0.11	b : 0.09	= : 0.09	" : 0.07	e : 0.07	h : 0.03	d : 0.03	g : 0.03	f : 0.03	# : 0.01	! : 0.01	
c : 0.18	i : 0.11	g : 0.09	= : 0.09	" : 0.07	b : 0.07	[ : 0.07	! : 0.05	e : 0.05	h : 0.03	d : 0.03	# : 0.03	f : 0.03	a : 0.01	
c : 0.16	" : 0.15	i : 0.11	[ : 0.09	! : 0.09	g : 0.07	= : 0.07	b : 0.03	d : 0.03	# : 0.03	f : 0.03	e : 0.03	h : 0.01	a : 0.01	
e : 0.20	" : 0.13	c : 0.13	i : 0.11	[ : 0.09	g : 0.07	= : 0.05	! : 0.03	a : 0.03	b : 0.03	h : 0.01	f : 0.01	# : 0.01	d : 0.01	
e : 0.20	d : 0.15	[ : 0.13	" : 0.11	i : 0.09	c : 0.09	g : 0.05	= : 0.05	b : 0.03	! : 0.01	f : 0.01	# : 0.01	
c : 0.28	e : 0.18	d : 0.15	[ : 0.11	i : 0.05	! : 0.05	g : 0.05	= : 0.05	f : 0.01	" : 0.01	
c : 0.30	e : 0.16	d : 0.15	b : 0.13	i : 0.05	g : 0.05	= : 0.05	! : 0.03	[ : 0.03	
c : 0.28	e : 0.16	d : 0.15	b : 0.13	a : 0.07	g : 0.05	= : 0.05	i : 0.03	o : 0.03	
n : 0.90	o : 0.07	c : 0.01	
n : 0.90	o : 0.07	l : 0.01	
n : 0.90	o : 0.07	l : 0.01	
n : 0.90	o : 0.07	l : 0.01	
n : 0.90	o : 0.07	c : 0.01	
c : 0.28	e : 0.16	d : 0.15	b : 0.13	a : 0.07	g : 0.05	= : 0.05	o : 0.03	i : 0.03	
c : 0.30	e : 0.16	d : 0.15	b : 0.13	i : 0.05	g : 0.05	= : 0.05	2 : 0.03	] : 0.03	
c : 0.28	e : 0.18	d : 0.15	] : 0.11	i : 0.07	2 : 0.05	g : 0.05	= : 0.05	f : 0.01	
e : 0.20	] : 0.16	d : 0.15	i : 0.09	c : 0.09	g : 0.05	2 : 0.05	= : 0.05	3 : 0.03	b : 0.03	4 : 0.01	f : 0.01	
e : 0.20	c : 0.15	i : 0.11	3 : 0.09	] : 0.07	g : 0.07	2 : 0.07	= : 0.07	b : 0.03	h : 0.01	4 : 0.01	a : 0.01	f : 0.01	d : 0.01	
c : 0.20	i : 0.11	3 : 0.11	2 : 0.09	g : 0.07	] : 0.07	= : 0.07	b : 0.05	h : 0.03	a : 0.03	4 : 0.03	e : 0.03	f : 0.01	d : 0.01	
c : 0.20	i : 0.11	] : 0.09	g : 0.09	3 : 0.09	b : 0.07	= : 0.07	2 : 0.05	h : 0.03	4 : 0.03	d : 0.03	e : 0.03	a : 0.01	f : 0.01	
c : 0.20	] : 0.15	i : 0.11	e : 0.09	= : 0.09	b : 0.07	3 : 0.05	h : 0.03	d : 0.03	g : 0.03	f : 0.03	5 : 0.01	4 : 0.01	2 : 0.01	
c : 0.18	3 : 0.11	i : 0.11	e : 0.11	= : 0.09	d : 0.07	b : 0.07	h : 0.03	g : 0.03	f : 0.03	2 : 0.03	5 : 0.01	a : 0.01	4 : 0.01	] : 0.01	
e : 0.15	c : 0.13	d : 0.11	3 : 0.09	= : 0.09	i : 0.07	] : 0.07	g : 0.07	f : 0.05	b : 0.05	h : 0.03	5 : 0.01	2 : 0.01	

#score	685.106755022258
#seq	53
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_transcript_m3_run1.txt

#BEAR
ddd[bbqqqqqqqqbb]dd	chr2:216296569-216296781(-)$1	212	94	113	13.3756
cc"""aqqqqqqqqa333c	chrX:18954078-18954338(-)$1	260	29	48	13.4519
ddddddqqqqqqqqdddd]	chr11:17097269-17097503(-)$1	234	27	46	15.1110
fffcccqqqqqqqqccc22	chr19:3982202-3982435(-)$1	233	35	54	13.6627
!addddqqqqqqqqdddd]	chr11:130005415-130005675(+)$1	260	102	121	15.4518
::ddddqqqqqqqqdddd:	chr1:55349278-55349510(-)$1	232	205	224	12.8877
##ddddqqqqqqqqdddd]	chr1:19419212-19419464(-)$1	252	29	48	15.5132
:eeeeeqqqqqqqqeeeee	chr19:45411737-45412023(+)$1	286	142	161	13.1758
ggggggqqqqqqqqggggg	chr17:79818100-79818339(-)$1	239	77	96	13.3795
ccc[bbqqqqqqqqbb22c	chr3:50112604-50112863(+)$1	259	97	116	13.0852
d[ddddqqqqqqqqdddd]	chr17:16024344-16024684(-)$1	340	73	92	15.4265
e!!cccqqqqqqqqccc22	chr3:120394539-120394800(-)$1	261	227	246	14.4613
iiiiiiqqqqqqqqiiiii	chr11:129992098-129992364(+)$1	266	9	28	13.4531
ccddddqqqqqqqqdddd3	chr19:45315319-45315563(+)$1	244	108	127	15.3813
####bbqqqqqqqqbb22d	chr2:216243913-216244140(-)$1	227	72	91	13.1032
d!!cccqqqqqqqqccc33	chr1:62321601-62321989(+)$1	388	286	305	14.8137
ddd[bbqqqqqqqqbb]dd	chr22:42229146-42229420(+)$1	274	209	228	13.3756
[eeeeeqqqqqqqqeeeee	chr6:44220681-44220934(+)$1	253	28	47	13.9297
ddddddqqqqqqqqdddd:	chr2:216279558-216279781(-)$1	223	153	172	14.1892
[eeeeeqqqqqqqqeeeee	chrX:152953966-152954280(+)$1	314	63	82	13.9297
e[ddddqqqqqqqqdddd]	chr19:6713903-6714118(-)$1	215	110	129	15.3860
ccddddqqqqqqqqddddf	chr12:26816526-26816801(-)$1	275	127	146	14.9429
bbddddqqqqqqqqdddd:	chr12:56481266-56481516(+)$1	250	19	38	13.9856
c[ddddqqqqqqqqddddc	chr2:216262376-216262612(-)$1	236	85	104	15.2541
feeeeeqqqqqqqqeeeee	chr6:144820333-144820570(+)$1	237	186	205	13.7086
d"""bbqqqqqqqqbb22d	chr17:27420240-27420518(-)$1	278	74	93	13.0854
cc[cccqqqqqqqqccc44	chr9:116997779-116997991(+)$1	212	160	179	14.4342
""ddddqqqqqqqqdddd]	chr12:861771-862067(+)$1	296	51	70	15.5577
eeeeeeqqqqqqqqeeeee	chr6:144769651-144769899(+)$1	248	145	164	13.7468
!!ddddqqqqqqqqdddd]	chr2:20251247-20251512(-)$1	265	202	221	15.6756
eeeebbqqqqqqqqbb]ee	chr11:17096162-17096386(-)$1	224	34	53	13.2578
::ddddqqqqqqqqdddde	chr9:116823666-116823881(-)$1	215	122	141	13.5549
ff!!bbqqqqqqqqbb22f	chr10:7750932-7751176(+)$1	244	121	140	12.8534
ccddddqqqqqqqqddddc	chr7:75615593-75615847(+)$1	254	172	191	15.0390
$$$cccqqqqqqqqccc55	chr15:66795115-66795351(-)$1	236	119	138	12.5421
###cccqqqqqqqqccc44	chr6:160492875-160493133(+)$1	258	213	232	14.5386
ggggggqqqqqqqqggggg	chr16:2806259-2806505(+)$1	246	187	206	13.3795
c[ddddqqqqqqqqdddd2	chr3:58108777-58109014(+)$1	237	139	158	15.4208
:eeeeeqqqqqqqqeeeee	chr1:43408802-43409076(-)$1	274	49	68	13.1758
[eeeeeqqqqqqqqeeeee	chr11:93466301-93466570(-)$1	269	204	223	13.9297
dd[cccqqqqqqqqcccdd	chr20:61460878-61461126(+)$1	248	198	217	14.0234
a!!cccqqqqqqqqccc22	chr3:133467303-133467522(+)$1	219	7	26	14.6184
ggggggqqqqqqqqggggg	chr2:63169752-63169999(+)$1	247	196	215	13.3795
c[ddddqqqqqqqqdddd]	chr20:17617172-17617393(-)$1	221	158	177	15.5498
::ddddqqqqqqqqdddd:	chr6:168366379-168366658(+)$1	279	248	267	12.8877
bbddddqqqqqqqqddddd	chr19:13054630-13054881(+)$1	251	131	150	14.5552
f!!cccqqqqqqqqccc44	chr2:216300426-216300643(-)$1	217	52	71	14.5843
d:ddddqqqqqqqqdddd:	chr19:6718313-6718521(-)$1	208	97	116	13.4993
!!ddddqqqqqqqqdddd2	chr6:132271361-132271634(-)$1	273	17	36	15.5466
cc!!bbqqqqqqqqbb333	chr6:7582879-7583147(+)$1	268	116	135	13.9540
ddd[bbqqqqqqqqbb]dd	chr19:18530124-18530433(+)$1	309	112	131	13.3756
c[ddddqqqqqqqqdddd]	chr11:47765524-47765817(-)$1	293	44	63	15.5498
b!!cccqqqqqqqqccc33	chr19:6678156-6678388(-)$1	232	173	192	14.7503
:eeeeeqqqqqqqqeeeee	chr20:39794217-39794465(+)$1	248	64	83	13.1758
!!ddddqqqqqqqqdddd2	chr1:19467820-19468118(-)$1	298	118	137	15.5466
g!!cccqqqqqqqqcccgg	chr2:54849414-54849709(+)$1	295	96	115	14.3700
:eeeeeqqqqqqqqeeeee	chr3:133472377-133472635(+)$1	258	44	63	13.1758
eee[bbqqqqqqqqbb]ee	chr19:1250116-1250380(+)$1	264	125	144	13.2591
b[ddddqqqqqqqqdddd5	chr2:216247988-216248258(-)$1	270	34	53	14.6371
ccccccqqqqqqqqccc:H	chr9:136217597-136217868(+)$1	271	147	166	12.4908
[eeeeeqqqqqqqqeeeee	chr6:144808590-144808886(+)$1	296	106	125	13.9297
ggggggqqqqqqqqggggg	chr2:44201186-44201538(-)$1	352	231	250	13.3795
::ddddqqqqqqqqdddd:	chr2:54844659-54844921(+)$1	262	76	95	12.8877

#otherMatches

#Seq PSSM
ACCGCUGCCAUGAAGGGGG	chr2:216296569-216296781(-)$1	212	94	113	13.3756
CAGACCUCCUUCCUGCCAU	chrX:18954078-18954338(-)$1	260	29	48	13.4519
cucaguaaauguuagcuGU	chr11:17097269-17097503(-)$1	234	27	46	15.1110
UGGGCUUUGGGUCUGGCCU	chr19:3982202-3982435(-)$1	233	35	54	13.6627
CCCCUGUGGACGUCCGGGU	chr11:130005415-130005675(+)$1	260	102	121	15.4518
GACACCAAGAAACAGGUGA	chr1:55349278-55349510(-)$1	232	205	224	12.8877
AUAAGCCUUCCUUUGCUUU	chr1:19419212-19419464(-)$1	252	29	48	15.5132
ACGGCUGUCCAAGGAGCUG	chr19:45411737-45412023(+)$1	286	142	161	13.1758
UGCGGAAAAGCAACUUCGC	chr17:79818100-79818339(-)$1	239	77	96	13.3795
CUGGCUGGAGGAAAGGGAC	chr3:50112604-50112863(+)$1	259	97	116	13.0852
ACAAGUUUUCAUUUGCUUU	chr17:16024344-16024684(-)$1	340	73	92	15.4265
AAAGUGCCUCCACCCACCG	chr3:120394539-120394800(-)$1	261	227	246	14.4613
UGUUUUUGUGUUUCAGAAU	chr11:129992098-129992364(+)$1	266	9	28	13.4531
CUCGGGAGCUCGCCCCCGC	chr19:45315319-45315563(+)$1	244	108	127	15.3813
AACCUCUAACCAAUGACAA	chr2:216243913-216244140(-)$1	227	72	91	13.1032
CUUGGCAUCUGUAAGCCUU	chr1:62321601-62321989(+)$1	388	286	305	14.8137
AUCGACGGUGAGUGGUGGG	chr22:42229146-42229420(+)$1	274	209	228	13.3756
uuaGGCUUGACAAUGCCUG	chr6:44220681-44220934(+)$1	253	28	47	13.9297
UCCCACCCCAUCCAGUGGA	chr2:216279558-216279781(-)$1	223	153	172	14.1892
AUGGCGAAGAAGAGCGCCG	chrX:152953966-152954280(+)$1	314	63	82	13.9297
CGCCAGGUGAGGGACUGGG	chr19:6713903-6714118(-)$1	215	110	129	15.3860
CUGCGGCUCUGUUACCGCG	chr12:26816526-26816801(-)$1	275	127	146	14.9429
ACAUCAUACCCCGUUGAUU	chr12:56481266-56481516(+)$1	250	19	38	13.9856
GACUUCAGACUCAGGAAGC	chr2:216262376-216262612(-)$1	236	85	104	15.2541
AAGGUCUGCUUGGUGACUU	chr6:144820333-144820570(+)$1	237	186	205	13.7086
UAAAACAGAUGGAGGUGCA	chr17:27420240-27420518(-)$1	278	74	93	13.0854
CAUGAGAUUUUCCCCUCCC	chr9:116997779-116997991(+)$1	212	160	179	14.4342
UCGGUGACAGAAGGCGCCU	chr12:861771-862067(+)$1	296	51	70	15.5577
CUGUUCGUGUAAGAGAACA	chr6:144769651-144769899(+)$1	248	145	164	13.7468
CCGGCCAAGAAGGAGGCCC	chr2:20251247-20251512(-)$1	265	202	221	15.6756
GGUAGAUUUUCCUUUCAUA	chr11:17096162-17096386(-)$1	224	34	53	13.2578
CAACGGUAACAACUUCGUC	chr9:116823666-116823881(-)$1	215	122	141	13.5549
ACCAUGAUCCAGAGCAAAG	chr10:7750932-7751176(+)$1	244	121	140	12.8534
CAAGGGCCGCUACUCCCUG	chr7:75615593-75615847(+)$1	254	172	191	15.0390
UUUGCGUCUUACUCUGUUC	chr15:66795115-66795351(-)$1	236	119	138	12.5421
UUAACCCCAGCGCAGGUGA	chr6:160492875-160493133(+)$1	258	213	232	14.5386
GGCCGCCGGGGUGAGCGGC	chr16:2806259-2806505(+)$1	246	187	206	13.3795
UAACGGUGGAAGGUCCGUG	chr3:58108777-58109014(+)$1	237	139	158	15.4208
ACACGCCUAUAACAGUGUG	chr1:43408802-43409076(-)$1	274	49	68	13.1758
UCUUAAAUUUAUACUUGGG	chr11:93466301-93466570(-)$1	269	204	223	13.9297
GUGCAGACCCUGCCCUGAC	chr20:61460878-61461126(+)$1	248	198	217	14.0234
UGAGGCCACUAAGUGCCAG	chr3:133467303-133467522(+)$1	219	7	26	14.6184
GUAAAAAUCACCAAUUUUA	chr2:63169752-63169999(+)$1	247	196	215	13.3795
AGCUGCAGGGCAAGGUGGG	chr20:17617172-17617393(-)$1	221	158	177	15.5498
CUACCUCAAAACACAGGUC	chr6:168366379-168366658(+)$1	279	248	267	12.8877
GCGCUCCUGCCGCAGAGCU	chr19:13054630-13054881(+)$1	251	131	150	14.5552
CGAAGGGAAGCAAACUUGG	chr2:216300426-216300643(-)$1	217	52	71	14.5843
GAUCCCAGCCAACAGGGAG	chr19:6718313-6718521(-)$1	208	97	116	13.4993
GCUGCAAGUACCAGUGCAC	chr6:132271361-132271634(-)$1	273	17	36	15.5466
AUGAGCUGAAUCGUGCAAA	chr6:7582879-7583147(+)$1	268	116	135	13.9540
GGGAGGAAAAAAAGCCACC	chr19:18530124-18530433(+)$1	309	112	131	13.3756
GAUUAUACAUAUUAAUAAG	chr11:47765524-47765817(-)$1	293	44	63	15.5498
AAACACUACCUCAUGUGGG	chr19:6678156-6678388(-)$1	232	173	192	14.7503
AGCAGCAGCACAGAGCUGC	chr20:39794217-39794465(+)$1	248	64	83	13.1758
GAGACAGCUGAAAAUGUCA	chr1:19467820-19468118(-)$1	298	118	137	15.5466
GAUUGAACAAACCAUCAUC	chr2:54849414-54849709(+)$1	295	96	115	14.3700
GGCCUGUUCUCUUUCAGGC	chr3:133472377-133472635(+)$1	258	44	63	13.1758
CGCGGCGAGGAUUggcggc	chr19:1250116-1250380(+)$1	264	125	144	13.2591
CCCUGCUUUUAUUUGUAGA	chr2:216247988-216248258(-)$1	270	34	53	14.6371
GGUCAGCAUUGCAUCUGAG	chr9:136217597-136217868(+)$1	271	147	166	12.4908
UUCUGCGCCACCCGGCAGA	chr6:144808590-144808886(+)$1	296	106	125	13.9297
CUGUGUGACUAUGAAUACG	chr2:44201186-44201538(-)$1	352	231	250	13.3795
CCUUGGCAGGUACCCCAAU	chr2:54844659-54844921(+)$1	262	76	95	12.8877

#DB
(((.((........)).))	chr2:216296569-216296781(-)$1	1	94	113	13.3756
((...(........)...)	chrX:18954078-18954338(-)$1	1	29	48	13.4519
((((((........)))).	chr11:17097269-17097503(-)$1	1	27	46	15.1110
((((((........)))..	chr19:3982202-3982435(-)$1	1	35	54	13.6627
.(((((........)))).	chr11:130005415-130005675(+)$1	1	102	121	15.4518
..((((........)))).	chr1:55349278-55349510(-)$1	1	205	224	12.8877
..((((........)))).	chr1:19419212-19419464(-)$1	1	29	48	15.5132
.(((((........)))))	chr19:45411737-45412023(+)$1	1	142	161	13.1758
((((((........)))))	chr17:79818100-79818339(-)$1	1	77	96	13.3795
(((.((........))..)	chr3:50112604-50112863(+)$1	1	97	116	13.0852
(.((((........)))).	chr17:16024344-16024684(-)$1	1	73	92	15.4265
(..(((........)))..	chr3:120394539-120394800(-)$1	1	227	246	14.4613
((((((........)))))	chr11:129992098-129992364(+)$1	1	9	28	13.4531
((((((........)))).	chr19:45315319-45315563(+)$1	1	108	127	15.3813
....((........))..)	chr2:216243913-216244140(-)$1	1	72	91	13.1032
(..(((........)))..	chr1:62321601-62321989(+)$1	1	286	305	14.8137
(((.((........)).))	chr22:42229146-42229420(+)$1	1	209	228	13.3756
.(((((........)))))	chr6:44220681-44220934(+)$1	1	28	47	13.9297
))((((........)))).	chr2:216279558-216279781(-)$1	1	153	172	14.1892
.(((((........)))))	chrX:152953966-152954280(+)$1	1	63	82	13.9297
(.((((........)))).	chr19:6713903-6714118(-)$1	1	110	129	15.3860
))((((........))))(	chr12:26816526-26816801(-)$1	1	127	146	14.9429
))((((........)))).	chr12:56481266-56481516(+)$1	1	19	38	13.9856
(.((((........)))))	chr2:216262376-216262612(-)$1	1	85	104	15.2541
)(((((........)))))	chr6:144820333-144820570(+)$1	1	186	205	13.7086
(...((........))..)	chr17:27420240-27420518(-)$1	1	74	93	13.0854
((.(((........)))..	chr9:116997779-116997991(+)$1	1	160	179	14.4342
..((((........)))).	chr12:861771-862067(+)$1	1	51	70	15.5577
)(((((........)))))	chr6:144769651-144769899(+)$1	1	145	164	13.7468
..((((........)))).	chr2:20251247-20251512(-)$1	1	202	221	15.6756
((((((........)).))	chr11:17096162-17096386(-)$1	1	34	53	13.2578
..((((........))))(	chr9:116823666-116823881(-)$1	1	122	141	13.5549
((..((........))..)	chr10:7750932-7751176(+)$1	1	121	140	12.8534
))((((........))))(	chr7:75615593-75615847(+)$1	1	172	191	15.0390
...(((........)))..	chr15:66795115-66795351(-)$1	1	119	138	12.5421
...(((........)))..	chr6:160492875-160493133(+)$1	1	213	232	14.5386
((((((........)))))	chr16:2806259-2806505(+)$1	1	187	206	13.3795
(.((((........)))).	chr3:58108777-58109014(+)$1	1	139	158	15.4208
.(((((........)))))	chr1:43408802-43409076(-)$1	1	49	68	13.1758
.(((((........)))))	chr11:93466301-93466570(-)$1	1	204	223	13.9297
((.(((........)))))	chr20:61460878-61461126(+)$1	1	198	217	14.0234
(..(((........)))..	chr3:133467303-133467522(+)$1	1	7	26	14.6184
((((((........)))))	chr2:63169752-63169999(+)$1	1	196	215	13.3795
(.((((........)))).	chr20:17617172-17617393(-)$1	1	158	177	15.5498
..((((........)))).	chr6:168366379-168366658(+)$1	1	248	267	12.8877
))((((........))))(	chr19:13054630-13054881(+)$1	1	131	150	14.5552
(..(((........)))..	chr2:216300426-216300643(-)$1	1	52	71	14.5843
).((((........)))).	chr19:6718313-6718521(-)$1	1	97	116	13.4993
..((((........)))).	chr6:132271361-132271634(-)$1	1	17	36	15.5466
((..((........))...	chr6:7582879-7583147(+)$1	1	116	135	13.9540
(((.((........)).))	chr19:18530124-18530433(+)$1	1	112	131	13.3756
(.((((........)))).	chr11:47765524-47765817(-)$1	1	44	63	15.5498
(..(((........)))..	chr19:6678156-6678388(-)$1	1	173	192	14.7503
.(((((........)))))	chr20:39794217-39794465(+)$1	1	64	83	13.1758
..((((........)))).	chr1:19467820-19468118(-)$1	1	118	137	15.5466
(..(((........)))))	chr2:54849414-54849709(+)$1	1	96	115	14.3700
.(((((........)))))	chr3:133472377-133472635(+)$1	1	44	63	13.1758
(((.((........)).))	chr19:1250116-1250380(+)$1	1	125	144	13.2591
(.((((........)))).	chr2:216247988-216248258(-)$1	1	34	53	14.6371
)))(((........))).)	chr9:136217597-136217868(+)$1	1	147	166	12.4908
.(((((........)))))	chr6:144808590-144808886(+)$1	1	106	125	13.9297
((((((........)))))	chr2:44201186-44201538(-)$1	1	231	250	13.3795
..((((........)))).	chr2:54844659-54844921(+)$1	1	76	95	12.8877

#PSSM
c : 0.19	d : 0.15	: : 0.12	g : 0.07	e : 0.07	f : 0.06	! : 0.06	[ : 0.06	b : 0.06	# : 0.04	i : 0.01	" : 0.01	$ : 0.01	a : 0.01	
e : 0.19	! : 0.14	c : 0.12	[ : 0.11	d : 0.09	: : 0.07	g : 0.06	# : 0.04	f : 0.03	b : 0.03	" : 0.03	a : 0.01	i : 0.01	$ : 0.01	
d : 0.44	e : 0.19	! : 0.12	g : 0.06	" : 0.03	c : 0.03	# : 0.03	[ : 0.03	f : 0.01	i : 0.01	$ : 0.01	
d : 0.39	c : 0.19	e : 0.17	[ : 0.07	g : 0.06	" : 0.03	! : 0.03	i : 0.01	# : 0.01	
d : 0.39	c : 0.19	b : 0.15	e : 0.15	g : 0.06	" : 0.01	i : 0.01	
d : 0.39	c : 0.19	b : 0.15	e : 0.15	g : 0.06	a : 0.01	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.39	c : 0.19	b : 0.15	e : 0.15	g : 0.06	a : 0.01	i : 0.01	
d : 0.39	c : 0.19	b : 0.15	e : 0.15	g : 0.06	3 : 0.01	i : 0.01	
d : 0.39	c : 0.19	e : 0.15	] : 0.07	g : 0.06	2 : 0.06	3 : 0.03	i : 0.01	
d : 0.46	e : 0.19	2 : 0.11	g : 0.07	3 : 0.06	4 : 0.04	i : 0.01	5 : 0.01	: : 0.01	
e : 0.20	] : 0.14	d : 0.11	2 : 0.09	: : 0.09	g : 0.07	c : 0.06	3 : 0.06	4 : 0.04	f : 0.03	5 : 0.03	i : 0.01	H : 0.01	

#score	887.7555192376809
#seq	63
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_CDS_m2_run1.txt

#BEAR
dd[dddd[ddddoooooodddd333ddd	chr5:96090261-96090546(+)$1	285	159	187	12.8943
ffffffa!!cccooooooccc22a22ff	chr19:45559637-45559893(+)$1	256	87	115	13.8179
==========bboooooobb]=======	chr14:56079093-56079386(+)$1	293	254	282	16.5146
eee!!ccc!!bboooooobb22ccc]ee	chr10:43292099-43292372(+)$1	273	61	89	15.6807
b"""eeeee[bboooooobb333eeeee	chr6:31857187-31857450(-)$1	263	72	100	15.6588
ggggggg[ddddoooooodddd]ggggg	chr1:71544235-71544492(-)$1	257	48	76	13.8198
e####a[bb[bboooooobb]bb]a444	chr7:72861495-72861744(-)$1	249	128	156	14.0588
iii$$$$$ddddooooooddddiiiiii	chr5:34938907-34939215(+)$1	308	42	70	12.9980
============oooooo==========	chr8:124381216-124381483(-)$1	267	23	51	15.1874
iiiiiii"""bboooooobb]iiiiiii	chr3:142773682-142773983(+)$1	301	37	65	17.1841
:dddd[bb[cccooooooccc333bb]d	chr1:186316323-186316560(-)$1	237	0	28	12.6516
ccceeeee[cccooooooccc333eeee	chr19:2210579-2210888(+)$1	309	220	248	14.4836
========"""aooooooa333======	chr1:25554509-25554797(-)$1	288	60	88	16.5536
iiiiiiiii[bboooooobb]iiiiiii	chr5:176943254-176943541(-)$1	287	5	33	16.2516
BBeeeee"""cccooooooccc22eeee	chr12:131297399-131297677(-)$1	278	113	141	11.3214
!!ggggggg[bboooooobb333ggggg	chr7:100482734-100482985(+)$1	251	156	184	16.8376
[eeeeea[ddddoooooodddd333a]e	chr5:149776165-149776504(+)$1	339	15	43	13.7420
gggggg[dddd[aooooooa]dddd]gg	chr5:179153580-179153800(+)$1	220	180	208	12.3198
=====####cccooooooccc333====	chr9:131456112-131456339(+)$1	227	55	83	16.6053
:ccc[dddd[bboooooobb333dddd]	chr2:136529887-136530135(+)$1	248	215	243	14.4026
::==========oooooo==========	chr11:73950079-73950403(+)$1	324	58	86	13.2664
""ffffffddddoooooodddd]fffff	chr6:99853862-99854091(-)$1	229	180	208	11.8431
d####bb[ddddoooooodddd]bb333	chr2:71654135-71654392(+)$1	257	164	192	12.3589
""cccccc!!bboooooobb22ccc]cc	chr16:2808370-2808582(+)$1	212	49	77	16.0336
eeeeeeee!!bboooooobb22eeeee2	chr12:39735235-39735526(-)$1	291	92	120	14.7818
i!!ccc####bboooooobb22ccc22i	chr1:245027200-245027530(-)$1	330	268	296	16.8174
ggggggg"""bboooooobb333ggggg	chr17:48818434-48818695(+)$1	261	2	30	17.7636
ddd[bb!!ddddoooooodddd22bbdd	chr10:70525562-70525797(+)$1	235	122	150	11.8880
hhhhhh####bboooooobb4444hhhh	chr11:17332348-17332658(+)$1	310	195	223	15.6227
bb[dddd!!cccoooooocccdddd]bb	chr19:15510025-15510286(-)$1	261	44	72	12.7965
ggccc####bbbbnnnnnbb]bb333cc	chr17:48827760-48827979(+)$1	219	130	158	10.5705
fffff"""ddddoooooodddd4444ff	chr2:203164967-203165191(+)$1	224	157	185	13.3565
$dddd####cccooooooccc4444ddd	chr1:16257653-16257958(+)$1	305	160	188	14.3002
d"""dddd!!bboooooobbdddd333d	chr7:106840509-106840771(+)$1	262	199	227	14.6806
ggggggg"""bboooooobb]ggggggg	chr21:40871654-40871942(+)$1	288	205	233	16.6525
gggg$$$$$cccooooooccc22ggggg	chr3:9488646-9488873(+)$1	227	125	153	14.4028
:::eeeee!!bboooooobb333eeeee	chr4:69202857-69203197(-)$1	340	34	62	13.2968
bbbccc####bboooooobb333ccc]b	chr3:121412771-121413083(-)$1	312	70	98	16.7171
"""ccc####bboooooobb4444ccc3	chr5:71491871-71492215(+)$1	344	123	151	17.3627
fff[eeeee[bboooooobb]eeeee33	chr10:129905047-129905330(-)$1	283	231	259	14.4365
ff[ccc####ccclllccc4444ccc]f	chr1:70705021-70705277(+)$1	256	45	73	10.7211
ceeeee[eeeeeooooooeeeeeeeeee	chr3:142761898-142762214(+)$1	316	198	226	11.8333
cc[ccc[eeeeeooooooeeeee]ccc]	chr10:12071409-12071624(-)$1	215	79	107	12.7952
eeeeeeeee!!aooooooa22eeeeegg	chr17:48797016-48797285(+)$1	269	60	88	12.8710
c!!ccc[eeeeeooooooeeeee333cc	chr19:5609905-5610125(-)$1	220	40	68	13.2587
ddddccc"""bbnnnnnbb4444ccc]d	chr16:66763912-66764178(-)$1	266	19	47	10.9561
:ffffff[a[bboooooobba]ffffff	chr11:3038233-3038582(-)$1	349	109	137	13.2559
hhhhhhh!!cccooooooccc]hhhhhh	chr21:33976437-33976691(-)$1	254	46	74	12.4591
ffff"""cccbboooooobb]ccc333f	chr11:3022310-3022578(-)$1	268	94	122	14.8222
gggggggeeeeeooooooeeeee]gggg	chr6:76600844-76601124(+)$1	280	219	247	12.8054
obbdddd"""bboooooobb22dddd::	chr17:54981513-54981905(-)$1	392	57	85	12.6222
hhhhhhh"""aooooooa333hhhhhhh	chr17:42477340-42477637(-)$1	297	177	205	11.4944

#otherMatches

#Seq PSSM
UGAUUAUAGAUUAGAAGAGGUCAAGGUA	chr5:96090261-96090546(+)$1	285	159	187	12.8943
CUGUACCAGAUCUACAUUGAUGAGUUGU	chr19:45559637-45559893(+)$1	256	87	115	13.8179
GAUAUUCUGUUAGGUACAUACACAGAAU	chr14:56079093-56079386(+)$1	293	254	282	16.5146
UGGAAGAAGACAGUGAAAUGGAUUUGCC	chr10:43292099-43292372(+)$1	273	61	89	15.6807
CUGAAGUUGAAGCUCUAACUGAACAACU	chr6:31857187-31857450(-)$1	263	72	100	15.6588
uguaaaauuuuacaaauuuaaauuuuua	chr1:71544235-71544492(-)$1	257	48	76	13.8198
UUAUGAGGUGGCUGGUUUGCGAUGUAAG	chr7:72861495-72861744(-)$1	249	128	156	14.0588
UGUAUGUGUCUAGACUGGUGGAGCAGUA	chr5:34938907-34939215(+)$1	308	42	70	12.9980
auauauauauauauacaaauauauauau	chr8:124381216-124381483(-)$1	267	23	51	15.1874
UAAAGGAAAAUGAAUACCCGAUCCUUUG	chr3:142773682-142773983(+)$1	301	37	65	17.1841
AUCUUGUGAGUCAGCUAAGACAGACAGA	chr1:186316323-186316560(-)$1	237	0	28	12.6516
CUGGAUGCCCUGCACGCUCAGACCGUGU	chr19:2210579-2210888(+)$1	309	220	248	14.4836
CUUCUUUUUAGGAAUGUGCGGCAAGAGG	chr1:25554509-25554797(-)$1	288	60	88	16.5536
CAGGAUCCUCGCCCCAAAGCCAGGAUCC	chr5:176943254-176943541(-)$1	287	5	33	16.2516
AGCUUGAAGAUCUGAACAAAGAAAUCAA	chr12:131297399-131297677(-)$1	278	113	141	11.3214
ACGCCGCGGGGCUGGAGUGCAAGCCGCG	chr7:100482734-100482985(+)$1	251	156	184	16.8376
GGGAGGCCUCUGUUUCCCCAGAAAAGAC	chr5:149776165-149776504(+)$1	339	15	43	13.7420
GUAAAGGAAAGGGGUCACACAUUUUGUU	chr5:179153580-179153800(+)$1	220	180	208	12.3198
UUUUAAGGUUCCCGAUAUGGAUGAUgaa	chr9:131456112-131456339(+)$1	227	55	83	16.6053
UGCAAGAGAAAGAAGGUACUAUAUUUCA	chr2:136529887-136530135(+)$1	248	215	243	14.4026
GGAAAGAGGUGUGUAAUAGCACUUUUUU	chr11:73950079-73950403(+)$1	324	58	86	13.2664
AAAUGGUAGAAUGUUAAAGUUCUUACUA	chr6:99853862-99854091(-)$1	229	180	208	11.8431
CCUUAAAGAAGAGCUUAAUUUUGUUACU	chr2:71654135-71654392(+)$1	257	164	192	12.3589
AAGGAAUGUUUGUUCUACCACCCAUCUC	chr16:2808370-2808582(+)$1	212	49	77	16.0336
CACAUUUUAGGAAGAAAGUCAAGAAGUG	chr12:39735235-39735526(-)$1	291	92	120	14.7818
CGACUCGGGCCCGAUGGAGGAGGAGGAG	chr1:245027200-245027530(-)$1	330	268	296	16.8174
GUACUUGUUUAUUUUCAUGUUACCAGGU	chr17:48818434-48818695(+)$1	261	2	30	17.7636
GUCGAGAAAGAAGAUAUAUUUUGCCUGA	chr10:70525562-70525797(+)$1	235	122	150	11.8880
AAGUUAAUCACCCAGUAAGGAUUGUGAC	chr11:17332348-17332658(+)$1	310	195	223	15.6227
AGUGCCCAUCUGCUCCCACAGGGGCCCU	chr19:15510025-15510286(-)$1	261	44	72	12.7965
AGUGUGAAGUCCGGUAGUCGAGAAAAGC	chr17:48827760-48827979(+)$1	219	130	158	10.5705
CUCACUUCUUUAGAACUGUGGAUUUUGU	chr2:203164967-203165191(+)$1	224	157	185	13.3565
UGUGGAACAGCUGGAACAAGUAGACCUG	chr1:16257653-16257958(+)$1	305	160	188	14.3002
UAAAUCCUGACUGUUGGAAGAGGAAAAG	chr7:106840509-106840771(+)$1	262	199	227	14.6806
ACAGCAGUUUGACUGGAUUCUCUGCUGU	chr21:40871654-40871942(+)$1	288	205	233	16.6525
UUUUGAAAACUUAGAGAAAAGAAAGAAG	chr3:9488646-9488873(+)$1	227	125	153	14.4028
UGGGCUUGAAGUGGAUAGACGUGCAAGC	chr4:69202857-69203197(-)$1	340	34	62	13.2968
CCAGAUGAAACAAAAGGAUGAAGAUCUU	chr3:121412771-121413083(-)$1	312	70	98	16.7171
AGACUGGAGACUAUGAAGAGAAGGCAGA	chr5:71491871-71492215(+)$1	344	123	151	17.3627
GAUGGUAAGAGCAUGAAAGCAUUUAUGG	chr10:129905047-129905330(-)$1	283	231	259	14.4365
gucuggccCCUAUUUAAUAACUUCUAAA	chr1:70705021-70705277(+)$1	256	45	73	10.7211
AGCCAAACUUCGUGAAAUUGAGGUUGGU	chr3:142761898-142762214(+)$1	316	198	226	11.8333
UUAUUUGUUUGUUUUUAUAUAGAGAAAA	chr10:12071409-12071624(-)$1	215	79	107	12.7952
CGCCCGAAGGAAGCACCAUGAUUUCGGC	chr17:48797016-48797285(+)$1	269	60	88	12.8710
GUCGGAACCUGUGGGUCAGCGGGCUGUC	chr19:5609905-5610125(-)$1	220	40	68	13.2587
AAAGCAAUUCAGUCCCUCUCUCUUUGCC	chr16:66763912-66764178(-)$1	266	19	47	10.9561
ACCCGCACCGUCAUGGAAGAGAUGCGGG	chr11:3038233-3038582(-)$1	349	109	137	13.2559
UUUAUGGAAGUGAUUAGCCACACUGUAG	chr21:33976437-33976691(-)$1	254	46	74	12.4591
UUUCAGGGUCUGCCCACACAUGACAUGG	chr11:3022310-3022578(-)$1	268	94	122	14.8222
UACAggcugggugugguggcucaugccu	chr6:76600844-76601124(+)$1	280	219	247	12.8054
UGACUGCAAACAGAAAGGUGGAGCAGCU	chr17:54981513-54981905(-)$1	392	57	85	12.6222
UUCCCAGCAAGAAAGAACGAUCUGGGAA	chr17:42477340-42477637(-)$1	297	177	205	11.4944

#DB
((.((((.((((......))))...)))	chr5:96090261-96090546(+)$1	1	159	187	12.8943
(((((((..(((......)))..)..))	chr19:45559637-45559893(+)$1	1	87	115	13.8179
((((((((((((......)).)))))))	chr14:56079093-56079386(+)$1	1	254	282	16.5146
(((..(((..((......))..))).))	chr10:43292099-43292372(+)$1	1	61	89	15.6807
(...(((((.((......))...)))))	chr6:31857187-31857450(-)$1	1	72	100	15.6588
(((((((.((((......)))).)))))	chr1:71544235-71544492(-)$1	1	48	76	13.8198
(....(.((.((......)).)).)...	chr7:72861495-72861744(-)$1	1	128	156	14.0588
(((.....((((......))))))))))	chr5:34938907-34939215(+)$1	1	42	70	12.9980
((((((((((((......))))))))))	chr8:124381216-124381483(-)$1	1	23	51	15.1874
(((((((...((......)).)))))))	chr3:142773682-142773983(+)$1	1	37	65	17.1841
.((((.((.(((......)))...)).)	chr1:186316323-186316560(-)$1	1	0	28	12.6516
((((((((.(((......)))...))))	chr19:2210579-2210888(+)$1	1	220	248	14.4836
((((((((...(......)...))))))	chr1:25554509-25554797(-)$1	1	60	88	16.5536
(((((((((.((......)).)))))))	chr5:176943254-176943541(-)$1	1	5	33	16.2516
(((((((...(((......)))..))))	chr12:131297399-131297677(-)$1	1	113	141	11.3214
..(((((((.((......))...)))))	chr7:100482734-100482985(+)$1	1	156	184	16.8376
.((((((.((((......))))...).)	chr5:149776165-149776504(+)$1	1	15	43	13.7420
((((((.((((.(......).)))).))	chr5:179153580-179153800(+)$1	1	180	208	12.3198
(((((....(((......)))...))))	chr9:131456112-131456339(+)$1	1	55	83	16.6053
.(((.((((.((......))...)))).	chr2:136529887-136530135(+)$1	1	215	243	14.4026
..((((((((((......))))))))))	chr11:73950079-73950403(+)$1	1	58	86	13.2664
..((((((((((......)))).)))))	chr6:99853862-99854091(-)$1	1	180	208	11.8431
(....((.((((......)))).))...	chr2:71654135-71654392(+)$1	1	164	192	12.3589
..((((((..((......))..))).))	chr16:2808370-2808582(+)$1	1	49	77	16.0336
((((((((..((......))..))))).	chr12:39735235-39735526(-)$1	1	92	120	14.7818
(..(((....((......))..)))..)	chr1:245027200-245027530(-)$1	1	268	296	16.8174
(((((((...((......))...)))))	chr17:48818434-48818695(+)$1	1	2	30	17.7636
(((.((..((((......))))..))))	chr10:70525562-70525797(+)$1	1	122	150	11.8880
((((((....((......))....))))	chr11:17332348-17332658(+)$1	1	195	223	15.6227
((.((((..(((......))))))).))	chr19:15510025-15510286(-)$1	1	44	72	12.7965
))(((....((((.....)).))...))	chr17:48827760-48827979(+)$1	1	130	158	10.5705
(((((...((((......))))....))	chr2:203164967-203165191(+)$1	1	157	185	13.3565
.((((....(((......)))....)))	chr1:16257653-16257958(+)$1	1	160	188	14.3002
(...((((..((......))))))...)	chr7:106840509-106840771(+)$1	1	199	227	14.6806
(((((((...((......)).)))))))	chr21:40871654-40871942(+)$1	1	205	233	16.6525
((((.....(((......)))..)))))	chr3:9488646-9488873(+)$1	1	125	153	14.4028
...(((((..((......))...)))))	chr4:69202857-69203197(-)$1	1	34	62	13.2968
((((((....((......))...))).)	chr3:121412771-121413083(-)$1	1	70	98	16.7171
...(((....((......))....))).	chr5:71491871-71492215(+)$1	1	123	151	17.3627
(((.(((((.((......)).)))))..	chr10:129905047-129905330(-)$1	1	231	259	14.4365
((.(((....(((...)))....))).)	chr1:70705021-70705277(+)$1	1	45	73	10.7211
((((((.(((((......))))))))))	chr3:142761898-142762214(+)$1	1	198	226	11.8333
((.(((.(((((......))))).))).	chr10:12071409-12071624(-)$1	1	79	107	12.7952
))))(((((..(......)..)))))((	chr17:48797016-48797285(+)$1	1	60	88	12.8710
(..(((.(((((......)))))...))	chr19:5609905-5610125(-)$1	1	40	68	13.2587
(((((((...((.....))....))).)	chr16:66763912-66764178(-)$1	1	19	47	10.9561
.((((((.(.((......))).))))))	chr11:3038233-3038582(-)$1	1	109	137	13.2559
(((((((..(((......))).))))))	chr21:33976437-33976691(-)$1	1	46	74	12.4591
((((...(((((......)).)))...)	chr11:3022310-3022578(-)$1	1	94	122	14.8222
((((((((((((......))))).))))	chr6:76600844-76601124(+)$1	1	219	247	12.8054
.))((((...((......))..))))..	chr17:54981513-54981905(-)$1	1	57	85	12.6222
(((((((...(......)...)))))))	chr17:42477340-42477637(-)$1	1	177	205	11.4944

#PSSM
g : 0.13	d : 0.09	f : 0.09	: : 0.09	= : 0.07	e : 0.07	i : 0.07	c : 0.07	b : 0.05	" : 0.05	h : 0.05	B : 0.01	! : 0.01	[ : 0.01	$ : 0.01	o : 0.01	
g : 0.13	f : 0.11	d : 0.09	e : 0.09	" : 0.09	= : 0.07	i : 0.05	c : 0.05	! : 0.05	h : 0.05	b : 0.05	# : 0.03	: : 0.03	B : 0.01	
g : 0.13	f : 0.11	e : 0.11	= : 0.09	[ : 0.07	d : 0.07	c : 0.07	" : 0.05	i : 0.05	h : 0.05	# : 0.03	! : 0.03	b : 0.03	: : 0.01	
c : 0.17	g : 0.13	e : 0.13	d : 0.11	f : 0.09	= : 0.09	h : 0.05	" : 0.03	# : 0.03	i : 0.03	[ : 0.03	! : 0.01	$ : 0.01	
e : 0.17	c : 0.17	d : 0.11	g : 0.11	= : 0.09	f : 0.07	h : 0.05	# : 0.03	$ : 0.03	i : 0.03	! : 0.01	[ : 0.01	b : 0.01	" : 0.01	
c : 0.17	e : 0.17	g : 0.11	d : 0.09	= : 0.07	f : 0.05	# : 0.05	h : 0.05	$ : 0.03	i : 0.03	b : 0.03	" : 0.03	a : 0.01	[ : 0.01	
# : 0.15	e : 0.13	d : 0.09	g : 0.09	[ : 0.09	= : 0.07	c : 0.05	a : 0.03	$ : 0.03	i : 0.03	b : 0.03	f : 0.03	" : 0.03	h : 0.03	! : 0.01	
e : 0.19	" : 0.15	# : 0.15	[ : 0.09	! : 0.07	= : 0.07	c : 0.05	d : 0.05	b : 0.03	$ : 0.03	i : 0.01	g : 0.01	f : 0.01	
d : 0.19	! : 0.15	" : 0.15	# : 0.15	e : 0.13	= : 0.05	[ : 0.03	b : 0.01	i : 0.01	g : 0.01	$ : 0.01	a : 0.01	c : 0.01	
d : 0.17	c : 0.17	" : 0.15	[ : 0.13	! : 0.11	# : 0.09	e : 0.07	= : 0.05	b : 0.01	
b : 0.46	c : 0.19	d : 0.17	e : 0.07	= : 0.03	" : 0.01	! : 0.01	a : 0.01	
b : 0.46	c : 0.19	d : 0.15	e : 0.07	= : 0.03	a : 0.03	[ : 0.01	o : 0.01	
o : 0.90	c : 0.03	a : 0.01	b : 0.01	n : 0.01	
o : 0.94	n : 0.03	l : 0.01	
o : 0.94	n : 0.03	l : 0.01	
o : 0.94	n : 0.03	l : 0.01	
o : 0.94	n : 0.03	c : 0.01	
o : 0.92	n : 0.01	c : 0.01	b : 0.01	a : 0.01	
b : 0.46	c : 0.17	d : 0.15	e : 0.07	= : 0.03	a : 0.03	o : 0.03	3 : 0.01	
b : 0.44	c : 0.17	d : 0.15	e : 0.07	= : 0.03	3 : 0.03	4 : 0.03	a : 0.01	2 : 0.01	
d : 0.17	c : 0.17	] : 0.17	3 : 0.15	2 : 0.11	4 : 0.07	e : 0.07	= : 0.03	a : 0.01	
d : 0.21	3 : 0.19	2 : 0.13	e : 0.11	4 : 0.09	= : 0.05	b : 0.03	i : 0.03	c : 0.03	] : 0.03	g : 0.01	h : 0.01	
3 : 0.21	e : 0.13	4 : 0.11	2 : 0.07	= : 0.07	c : 0.07	d : 0.07	] : 0.05	i : 0.05	b : 0.03	h : 0.03	g : 0.01	f : 0.01	
3 : 0.13	c : 0.13	e : 0.11	g : 0.09	d : 0.09	= : 0.07	4 : 0.07	] : 0.05	i : 0.05	2 : 0.03	f : 0.03	h : 0.03	a : 0.01	b : 0.01	
c : 0.15	e : 0.15	3 : 0.11	g : 0.11	= : 0.09	d : 0.07	i : 0.05	b : 0.05	h : 0.05	f : 0.03	4 : 0.03	2 : 0.01	a : 0.01	
e : 0.15	g : 0.11	= : 0.09	3 : 0.09	c : 0.09	d : 0.07	] : 0.07	i : 0.05	h : 0.05	2 : 0.03	4 : 0.03	b : 0.03	f : 0.03	a : 0.01	
g : 0.15	e : 0.13	= : 0.09	] : 0.09	c : 0.09	d : 0.07	f : 0.07	3 : 0.07	i : 0.05	h : 0.05	4 : 0.01	2 : 0.01	b : 0.01	: : 0.01	
g : 0.15	e : 0.13	d : 0.11	f : 0.11	= : 0.09	i : 0.07	3 : 0.05	c : 0.05	h : 0.05	] : 0.03	b : 0.03	4 : 0.01	2 : 0.01	: : 0.01	

#score	731.8290062554198
#seq	52
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_transcript_m3_run2.txt

#BEAR
ffffffqqqqqqqqffffff	chr1:51389381-51389654(-)$1	273	70	90	15.8200
ffffffqqqqqqqqffffff	chr1:115297524-115297820(-)$1	296	92	112	15.8200
ggg[bbqqqqqqqqbb]ggg	chr11:9316560-9316779(-)$1	219	25	45	14.7581
iiiiiiqqqqqqqqiiiiii	chr1:12569385-12569641(+)$1	256	153	173	14.7853
ffffffqqqqqqqqffffff	chr17:41283039-41283341(+)$1	302	25	45	15.8200
feeeeeqqqqqqqqeeeeec	chr4:140282051-140282345(+)$1	294	79	99	14.5276
ccccccqqqqqqqqccc]cc	chr6:135520140-135520457(+)$1	317	171	191	14.9960
ggggggqqqqqqqqgggggg	chr22:22114619-22114841(-)$1	222	151	171	15.3650
cc[cccqqqqqqqqccc]cc	chr3:15886607-15886861(-)$1	254	209	229	15.2848
ffffffqqqqqqqqffffff	chr15:28443312-28443619(-)$1	307	165	185	15.8200
ggggggqqqqqqqqgggggg	chr1:22029790-22030032(-)$1	242	173	193	15.3650
bb[cccqqqqqqqqccc]bb	chr7:16722095-16722387(+)$1	292	94	114	14.1809
ffffffqqqqqqqqffffff	chr17:59945442-59945738(-)$1	296	29	49	15.8200
ffffffqqqqqqqqffffff	chrX:73189165-73189398(+)$1	233	149	169	15.8200
dd[cccqqqqqqqqccc]dd	chr12:46355421-46355689(-)$1	268	125	145	14.6260
ff[cccqqqqqqqqccc]ff	chr10:112428631-112428963(+)$1	332	83	103	15.8096
gg[cccqqqqqqqqccc]gg	chr17:27804455-27804702(+)$1	247	148	168	15.6786
fff[bbqqqqqqqqbb]fff	chr6:170633814-170634159(+)$1	345	27	47	14.9347
ggggggqqqqqqqqgggggg	chr8:141840545-141840828(-)$1	283	188	208	15.3650
ggggggqqqqqqqqgggggg	chr1:55549475-55549746(-)$1	271	193	213	15.3650
ggggggqqqqqqqqgggggg	chr14:31048671-31048945(+)$1	274	167	187	15.3650
ii!!bbqqqqqqqqbb4444	chr6:31797511-31797767(+)$1	256	131	151	14.1044
ffffffqqqqqqqqffffff	chrX:100355746-100356013(+)$1	267	133	153	15.8200
[eeeeeqqqqqqqqeeeeed	chr18:1277091-1277381(-)$1	290	179	199	14.3362
gg[cccqqqqqqqqccc]gg	chr2:174980649-174980955(-)$1	306	195	215	15.6786
!!ddddqqqqqqqqdddd33	chr6:136984268-136984685(-)$1	417	329	349	13.3139
ffffffqqqqqqqqffffff	chr11:95546850-95547186(+)$1	336	8	28	15.8200
ffffffqqqqqqqqffffff	chr5:89690036-89690333(-)$1	297	58	78	15.8200
b!!cccqqqqqqqqccc22b	chr1:35848946-35849213(+)$1	267	133	153	14.1625
"eeeeeqqqqqqqqeeeeec	chr11:94205647-94205935(-)$1	288	245	265	14.3653
ggggggqqqqqqqqgggggg	chr4:48773311-48773584(-)$1	273	175	195	15.3650
ggg[bbqqqqqqqqbb22gg	chr10:52130551-52130803(-)$1	252	197	217	14.3023
c!!cccqqqqqqqqccc]cc	chr18:43518629-43518929(-)$1	300	30	50	15.2488
ffffffqqqqqqqqffffff	chr1:1327522-1327742(-)$1	220	39	59	15.8200
eeeeeeqqqqqqqqeeeee]	chr4:128853929-128854192(-)$1	263	152	172	14.4471
ggggggqqqqqqqqgggggg	chr1:100561207-100561474(-)$1	267	57	77	15.3650
e!!cccqqqqqqqqccc]ee	chr5:80600346-80600655(+)$1	309	90	110	15.2220
!!ddddqqqqqqqqdddd33	chr11:108200755-108201032(+)$1	277	57	77	13.3139
ffffffqqqqqqqqffffff	chr12:132573631-132573856(+)$1	225	119	139	15.8200
fff[bbqqqqqqqqbb]fff	chr1:172574948-172575223(+)$1	275	92	112	14.9347
ffffffqqqqqqqqffffff	chr7:77230062-77230317(+)$1	255	90	110	15.8200
d!!cccqqqqqqqqccc333	chr3:157989570-157989907(+)$1	337	268	288	15.0747
ffffffqqqqqqqqffffff	chr6:134493854-134494165(-)$1	311	213	233	15.8200
iiiiiiqqqqqqqqiiiiii	chr13:79896294-79896537(-)$1	243	48	68	14.7853
eeeeeeqqqqqqqqeeeee]	chr1:168008975-168009205(+)$1	230	168	188	14.4471
iiiiiiqqqqqqqqiiiiii	chr8:101725082-101725398(-)$1	316	247	267	14.7853
:a[cccqqqqqqqqccc]ae	chr1:100336383-100336655(+)$1	272	120	140	13.9991
ggg[bbqqqqqqqqbb]ggg	chr7:124498532-124498801(-)$1	269	147	167	14.7581
dd[cccqqqqqqqqcccddd	chr11:65201803-65202039(+)$1	236	99	119	14.2460
[eeeeeqqqqqqqqeeeee]	chr1:78409661-78409907(-)$1	246	140	160	14.6044
eeeebbqqqqqqqqbb]eee	chr21:11060758-11061000(-)$1	242	171	191	14.1571
$$$cccqqqqqqqqccc333	chr19:21223429-21223724(+)$1	295	41	61	14.2787
ffffffqqqqqqqqffffff	chr5:70762647-70762943(+)$1	296	128	148	15.8200
[eeeeeqqqqqqqqeeeee]	chr17:62498807-62499063(-)$1	256	223	243	14.6044
cc[cccqqqqqqqqcccccc	chr2:170743972-170744242(+)$1	270	84	104	15.0198
[eeeeeqqqqqqqqeeeeec	chr17:57704738-57704997(+)$1	259	135	155	14.5252
"eeeeeqqqqqqqqeeeee3	chr17:59930373-59930681(-)$1	308	93	113	14.4347
eeecccqqqqqqqqccc]ee	chr11:3382726-3383039(-)$1	313	175	195	15.1011
gggggaqqqqqqqqa]gggg	chr10:112682602-112682885(+)$1	283	64	84	15.0804
eeeeeaqqqqqqqqa]eeee	chr6:147656270-147656550(+)$1	280	132	152	14.3224
!eeeeeqqqqqqqqeeeee2	chr2:27820646-27820880(+)$1	234	39	59	14.2650
ffffffqqqqqqqqffffff	chr10:116594119-116594465(+)$1	346	77	97	15.8200
ggggggqqqqqqqqgggggg	chr7:30653605-30653872(+)$1	267	130	150	15.3650
ffffffqqqqqqqqffffff	chr1:226349352-226349682(-)$1	330	250	270	15.8200
ffffffqqqqqqqqffffff	chr21:23657471-23657699(+)$1	228	84	104	15.8200
ee!!bbqqqqqqqqbb22ee	chr6:155106230-155106546(+)$1	316	34	54	13.9162
dd[cccqqqqqqqqcccddd	chr4:151764588-151764869(-)$1	281	245	265	14.2460
cc!!bbqqqqqqqqbb4444	chr17:29515983-29516347(+)$1	364	258	278	14.0090
ffffffqqqqqqqqffffff	chr3:33633701-33633982(-)$1	281	247	267	15.8200
ffffffqqqqqqqqffffff	chr10:51622936-51623237(-)$1	301	122	142	15.8200
ffffffqqqqqqqqffffff	chr18:1623879-1624152(+)$1	273	72	92	15.8200
eeee[aqqqqqqqqa]eeee	chr11:46844933-46845222(-)$1	289	266	286	14.3257
ffffffqqqqqqqqffffff	chr15:91418019-91418301(+)$1	282	145	165	15.8200
!a!!bbqqqqqqqqbb22a]	chr18:2582411-2582681(+)$1	270	143	163	13.8838

#otherMatches

#Seq PSSM
cuucuauacucaguugggag	chr1:51389381-51389654(-)$1	273	70	90	15.8200
gucaauuuuuuuacauugau	chr1:115297524-115297820(-)$1	296	92	112	15.8200
AAAAGGUCUGCUCUUCAUUU	chr11:9316560-9316779(-)$1	219	25	45	14.7581
AUUCUUAAAAGUUAAAGAAU	chr1:12569385-12569641(+)$1	256	153	173	14.7853
UAACCCUUUGCUGUGGGUUG	chr17:41283039-41283341(+)$1	302	25	45	15.8200
AUGCCAUAUACCCUUGGUAA	chr4:140282051-140282345(+)$1	294	79	99	14.5276
UCAUGUCUAUUCCCACAUUG	chr6:135520140-135520457(+)$1	317	171	191	14.9960
UUAUGGCACCUGACUUGUAA	chr22:22114619-22114841(-)$1	222	151	171	15.3650
aguguuggaggugggaccuu	chr3:15886607-15886861(-)$1	254	209	229	15.2848
UUUUGUUCAAGCACACAAAA	chr15:28443312-28443619(-)$1	307	165	185	15.8200
UAAUUGAAAAUGAACAGUUA	chr1:22029790-22030032(-)$1	242	173	193	15.3650
AUUUGUUUUAUCUUACGUGU	chr7:16722095-16722387(+)$1	292	94	114	14.1809
gcuugugaucuuuaacaagu	chr17:59945442-59945738(-)$1	296	29	49	15.8200
guagaugucauauaguuuau	chrX:73189165-73189398(+)$1	233	149	169	15.8200
UUGUCUAUUAGAAAAGGAAG	chr12:46355421-46355689(-)$1	268	125	145	14.6260
GUGACUUUUAAAAUGGUGAC	chr10:112428631-112428963(+)$1	332	83	103	15.8096
AACuuauuuuaucuuaaauu	chr17:27804455-27804702(+)$1	247	148	168	15.6786
UUUUUGGCUUUCUACAUGAA	chr6:170633814-170634159(+)$1	345	27	47	14.9347
CUUUUUAUAUUUCAGAAAAG	chr8:141840545-141840828(-)$1	283	188	208	15.3650
CCUUCAUCAGUUACUGGAGG	chr1:55549475-55549746(-)$1	271	193	213	15.3650
GAUAUAUAAUAUUCUGUAUU	chr14:31048671-31048945(+)$1	274	167	187	15.3650
AGGUGGAUUAGGGGCCUUUG	chr6:31797511-31797767(+)$1	256	131	151	14.1044
AAAGUCAACCUCUAGACUUU	chrX:100355746-100356013(+)$1	267	133	153	15.8200
ugaaauauuuuauaauuucu	chr18:1277091-1277381(-)$1	290	179	199	14.3362
GGUGGGUACUGUUUUCUUUU	chr2:174980649-174980955(-)$1	306	195	215	15.6786
uccaccacuuauaaggugua	chr6:136984268-136984685(-)$1	417	329	349	13.3139
CCAGGACUGAAAUUUCUUGG	chr11:95546850-95547186(+)$1	336	8	28	15.8200
AGGGUUGUUUAAAGAACCUU	chr5:89690036-89690333(-)$1	297	58	78	15.8200
AAUUUAUUUCCUGUUAAUGU	chr1:35848946-35849213(+)$1	267	133	153	14.1625
gucuuccauaucuagaagaa	chr11:94205647-94205935(-)$1	288	245	265	14.3653
GUCUUAAAGCACUAUGAGAU	chr4:48773311-48773584(-)$1	273	175	195	15.3650
ucuggugggacaagaugugg	chr10:52130551-52130803(-)$1	252	197	217	14.3023
ACUGGCUCUCCCCUGCUUUG	chr18:43518629-43518929(-)$1	300	30	50	15.2488
UUGUAUCACUUCAAAUACAG	chr1:1327522-1327742(-)$1	220	39	59	15.8200
GUAAGGCAAAUUUUUCUUAC	chr4:128853929-128854192(-)$1	263	152	172	14.4471
gaauuucuucuguugaauuu	chr1:100561207-100561474(-)$1	267	57	77	15.3650
UUUAAUAAUUAAAAGUUUAA	chr5:80600346-80600655(+)$1	309	90	110	15.2220
UAGAAGUUUGCUUUUUUCCC	chr11:108200755-108201032(+)$1	277	57	77	13.3139
ugaugaaauugugcucauua	chr12:132573631-132573856(+)$1	225	119	139	15.8200
aguguuuuauugcuaagauu	chr1:172574948-172575223(+)$1	275	92	112	14.9347
ACAUUAUUUAAGUUUGAUGU	chr7:77230062-77230317(+)$1	255	90	110	15.8200
CAAAGGAUUAAGGGCCUAAA	chr3:157989570-157989907(+)$1	337	268	288	15.0747
UCAUUUGCAACCCAGAAUGA	chr6:134493854-134494165(-)$1	311	213	233	15.8200
GAAGAAGUAUGUUAUUUUUU	chr13:79896294-79896537(-)$1	243	48	68	14.7853
aucuucuauguuccggggac	chr1:168008975-168009205(+)$1	230	168	188	14.4471
CCAAAACCUUGAGAUUUUGG	chr8:101725082-101725398(-)$1	316	247	267	14.7853
CGUCAUUAUUAAAUAUGUCA	chr1:100336383-100336655(+)$1	272	120	140	13.9991
GAAUGUAGCUGAUAACUUUU	chr7:124498532-124498801(-)$1	269	147	167	14.7581
ugcuauuguguccuguacau	chr11:65201803-65202039(+)$1	236	99	119	14.2460
CUCAAUAAAUGUACAUUGAU	chr1:78409661-78409907(-)$1	246	140	160	14.6044
uuaauauuuuaaCUUGCUUG	chr21:11060758-11061000(-)$1	242	171	191	14.1571
AAUACAgucuauaauguugu	chr19:21223429-21223724(+)$1	295	41	61	14.2787
AGAGCAUAUUUAACUGCUUU	chr5:70762647-70762943(+)$1	296	128	148	15.8200
CUGGUUGACUUAAGGACCAA	chr17:62498807-62499063(-)$1	256	223	243	14.6044
CUUAUAACUGAUAAUAUAGU	chr2:170743972-170744242(+)$1	270	84	104	15.0198
UCAUUUGAAUUGCAAAAUGU	chr17:57704738-57704997(+)$1	259	135	155	14.5252
uauauauguaaucuuguguc	chr17:59930373-59930681(-)$1	308	93	113	14.4347
uuauacuaguugauguguug	chr11:3382726-3383039(-)$1	313	175	195	15.1011
AAGUACUUUUAUGUGAUACU	chr10:112682602-112682885(+)$1	283	64	84	15.0804
AGGAGCUGUUUUCUGUCUCC	chr6:147656270-147656550(+)$1	280	132	152	14.3224
CUACUUGGGCUGCAAAGUGA	chr2:27820646-27820880(+)$1	234	39	59	14.2650
AUUUAGUGGUUUAUCUAAAU	chr10:116594119-116594465(+)$1	346	77	97	15.8200
GAUuuguaugauuucaaguc	chr7:30653605-30653872(+)$1	267	130	150	15.3650
GGAUUCAACGUAUAGGGUUC	chr1:226349352-226349682(-)$1	330	250	270	15.8200
gcaaugauuauuacuauugu	chr21:23657471-23657699(+)$1	228	84	104	15.8200
uacucaacaucaugugucua	chr6:155106230-155106546(+)$1	316	34	54	13.9162
GUAGACAAUUUAAAGUCAUA	chr4:151764588-151764869(-)$1	281	245	265	14.2460
uguacauuuuUACUUGGUUU	chr17:29515983-29516347(+)$1	364	258	278	14.0090
UUAGGUUCAUCAUCACCUGA	chr3:33633701-33633982(-)$1	281	247	267	15.8200
GUCCCGCGUAAGUAUGGGGC	chr10:51622936-51623237(-)$1	301	122	142	15.8200
gaagauucauuccuaucuuc	chr18:1623879-1624152(+)$1	273	72	92	15.8200
uauugaaaaaaaacuggaua	chr11:46844933-46845222(-)$1	289	266	286	14.3257
uuuaccuugaucauggugaa	chr15:91418019-91418301(+)$1	282	145	165	15.8200
UAUUACUAACCACUGUUUUU	chr18:2582411-2582681(+)$1	270	143	163	13.8838

#DB
((((((........))))))	chr1:51389381-51389654(-)$1	1	70	90	15.8200
((((((........))))))	chr1:115297524-115297820(-)$1	1	92	112	15.8200
(((.((........)).)))	chr11:9316560-9316779(-)$1	1	25	45	14.7581
((((((........))))))	chr1:12569385-12569641(+)$1	1	153	173	14.7853
((((((........))))))	chr17:41283039-41283341(+)$1	1	25	45	15.8200
)(((((........)))))(	chr4:140282051-140282345(+)$1	1	79	99	14.5276
((((((........))).))	chr6:135520140-135520457(+)$1	1	171	191	14.9960
((((((........))))))	chr22:22114619-22114841(-)$1	1	151	171	15.3650
((.(((........))).))	chr3:15886607-15886861(-)$1	1	209	229	15.2848
((((((........))))))	chr15:28443312-28443619(-)$1	1	165	185	15.8200
((((((........))))))	chr1:22029790-22030032(-)$1	1	173	193	15.3650
((.(((........))).))	chr7:16722095-16722387(+)$1	1	94	114	14.1809
((((((........))))))	chr17:59945442-59945738(-)$1	1	29	49	15.8200
((((((........))))))	chrX:73189165-73189398(+)$1	1	149	169	15.8200
((.(((........))).))	chr12:46355421-46355689(-)$1	1	125	145	14.6260
((.(((........))).))	chr10:112428631-112428963(+)$1	1	83	103	15.8096
((.(((........))).))	chr17:27804455-27804702(+)$1	1	148	168	15.6786
(((.((........)).)))	chr6:170633814-170634159(+)$1	1	27	47	14.9347
((((((........))))))	chr8:141840545-141840828(-)$1	1	188	208	15.3650
((((((........))))))	chr1:55549475-55549746(-)$1	1	193	213	15.3650
((((((........))))))	chr14:31048671-31048945(+)$1	1	167	187	15.3650
((..((........))....	chr6:31797511-31797767(+)$1	1	131	151	14.1044
((((((........))))))	chrX:100355746-100356013(+)$1	1	133	153	15.8200
.(((((........))))))	chr18:1277091-1277381(-)$1	1	179	199	14.3362
((.(((........))).))	chr2:174980649-174980955(-)$1	1	195	215	15.6786
..((((........))))..	chr6:136984268-136984685(-)$1	1	329	349	13.3139
((((((........))))))	chr11:95546850-95547186(+)$1	1	8	28	15.8200
((((((........))))))	chr5:89690036-89690333(-)$1	1	58	78	15.8200
(..(((........)))..)	chr1:35848946-35849213(+)$1	1	133	153	14.1625
.(((((........))))))	chr11:94205647-94205935(-)$1	1	245	265	14.3653
((((((........))))))	chr4:48773311-48773584(-)$1	1	175	195	15.3650
(((.((........))..))	chr10:52130551-52130803(-)$1	1	197	217	14.3023
(..(((........))).))	chr18:43518629-43518929(-)$1	1	30	50	15.2488
((((((........))))))	chr1:1327522-1327742(-)$1	1	39	59	15.8200
((((((........))))).	chr4:128853929-128854192(-)$1	1	152	172	14.4471
((((((........))))))	chr1:100561207-100561474(-)$1	1	57	77	15.3650
(..(((........))).))	chr5:80600346-80600655(+)$1	1	90	110	15.2220
..((((........))))..	chr11:108200755-108201032(+)$1	1	57	77	13.3139
((((((........))))))	chr12:132573631-132573856(+)$1	1	119	139	15.8200
(((.((........)).)))	chr1:172574948-172575223(+)$1	1	92	112	14.9347
((((((........))))))	chr7:77230062-77230317(+)$1	1	90	110	15.8200
(..(((........)))...	chr3:157989570-157989907(+)$1	1	268	288	15.0747
((((((........))))))	chr6:134493854-134494165(-)$1	1	213	233	15.8200
((((((........))))))	chr13:79896294-79896537(-)$1	1	48	68	14.7853
((((((........))))).	chr1:168008975-168009205(+)$1	1	168	188	14.4471
((((((........))))))	chr8:101725082-101725398(-)$1	1	247	267	14.7853
.(.(((........))).)(	chr1:100336383-100336655(+)$1	1	120	140	13.9991
(((.((........)).)))	chr7:124498532-124498801(-)$1	1	147	167	14.7581
((.(((........))))))	chr11:65201803-65202039(+)$1	1	99	119	14.2460
.(((((........))))).	chr1:78409661-78409907(-)$1	1	140	160	14.6044
((((((........)).)))	chr21:11060758-11061000(-)$1	1	171	191	14.1571
...(((........)))...	chr19:21223429-21223724(+)$1	1	41	61	14.2787
((((((........))))))	chr5:70762647-70762943(+)$1	1	128	148	15.8200
.(((((........))))).	chr17:62498807-62499063(-)$1	1	223	243	14.6044
((.(((........))))))	chr2:170743972-170744242(+)$1	1	84	104	15.0198
.(((((........))))))	chr17:57704738-57704997(+)$1	1	135	155	14.5252
.(((((........))))).	chr17:59930373-59930681(-)$1	1	93	113	14.4347
((((((........))).))	chr11:3382726-3383039(-)$1	1	175	195	15.1011
((((((........).))))	chr10:112682602-112682885(+)$1	1	64	84	15.0804
((((((........).))))	chr6:147656270-147656550(+)$1	1	132	152	14.3224
.(((((........))))).	chr2:27820646-27820880(+)$1	1	39	59	14.2650
((((((........))))))	chr10:116594119-116594465(+)$1	1	77	97	15.8200
((((((........))))))	chr7:30653605-30653872(+)$1	1	130	150	15.3650
((((((........))))))	chr1:226349352-226349682(-)$1	1	250	270	15.8200
((((((........))))))	chr21:23657471-23657699(+)$1	1	84	104	15.8200
((..((........))..))	chr6:155106230-155106546(+)$1	1	34	54	13.9162
((.(((........))))))	chr4:151764588-151764869(-)$1	1	245	265	14.2460
((..((........))....	chr17:29515983-29516347(+)$1	1	258	278	14.0090
((((((........))))))	chr3:33633701-33633982(-)$1	1	247	267	15.8200
((((((........))))))	chr10:51622936-51623237(-)$1	1	122	142	15.8200
((((((........))))))	chr18:1623879-1624152(+)$1	1	72	92	15.8200
((((.(........).))))	chr11:46844933-46845222(-)$1	1	266	286	14.3257
((((((........))))))	chr15:91418019-91418301(+)$1	1	145	165	15.8200
.(..((........))..).	chr18:2582411-2582681(+)$1	1	143	163	13.8838

#PSSM
f : 0.33	g : 0.18	e : 0.10	c : 0.06	i : 0.05	d : 0.05	[ : 0.05	! : 0.05	b : 0.02	" : 0.02	: : 0.01	$ : 0.01	
f : 0.32	e : 0.20	g : 0.18	! : 0.08	i : 0.05	c : 0.05	d : 0.04	a : 0.02	b : 0.01	$ : 0.01	
f : 0.31	e : 0.18	g : 0.16	[ : 0.13	! : 0.10	i : 0.04	d : 0.02	c : 0.01	$ : 0.01	
f : 0.28	c : 0.22	e : 0.17	g : 0.12	[ : 0.06	! : 0.05	i : 0.04	d : 0.02	
f : 0.28	c : 0.22	e : 0.14	b : 0.13	g : 0.12	i : 0.04	d : 0.02	[ : 0.01	
f : 0.28	c : 0.22	b : 0.13	e : 0.13	g : 0.10	i : 0.04	a : 0.04	d : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
f : 0.28	c : 0.22	b : 0.13	e : 0.13	g : 0.10	i : 0.04	a : 0.04	d : 0.02	
f : 0.28	c : 0.22	b : 0.13	e : 0.13	g : 0.10	i : 0.04	] : 0.04	d : 0.02	
f : 0.28	c : 0.22	e : 0.16	g : 0.12	] : 0.06	i : 0.04	2 : 0.04	4 : 0.02	d : 0.02	
f : 0.31	e : 0.17	g : 0.14	] : 0.14	d : 0.05	2 : 0.05	i : 0.04	4 : 0.02	3 : 0.02	c : 0.01	
f : 0.32	e : 0.21	g : 0.18	c : 0.05	3 : 0.05	i : 0.04	d : 0.04	4 : 0.02	a : 0.02	b : 0.01	2 : 0.01	
f : 0.32	g : 0.18	c : 0.09	e : 0.09	3 : 0.06	] : 0.06	d : 0.05	i : 0.04	b : 0.02	4 : 0.02	2 : 0.01	

#score	1111.0247755765447
#seq	74
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_CDS_m3_run1.txt

#BEAR
dddddd####ffffff!!cccgggggg	chr15:44088195-44088536(+)$1	341	101	128	9.3715
!!bb!!ccc[ggggggg"""dddd!!c	chr15:49620634-49620945(+)$1	311	31	58	12.1199
c[ccc$$$$$eeeee$$$$$ccc!!ff	chr10:133769016-133769312(+)$1	296	174	201	11.1266
:eeeee####ccc!!ccc!!ffffffb	chr12:123997759-123998014(-)$1	255	152	179	9.3067
dd22ffffffggggggg"""ffffffm	chr2:58386562-58386816(-)$1	254	146	173	10.3759
iiiiiiii[ffffff[ccc[ccc!!ee	chr14:71540090-71540388(+)$1	298	209	236	9.0251
!!bb!!a[hhhhhhhh[a!!ccc[ccc	chr3:120357302-120357626(-)$1	324	252	279	10.1046
fffff$$$$$ggggggg"""ffffff$	chr16:2821324-2821616(+)$1	292	7	34	12.3588
ffffccc[iiiiiiiii"""bb[ccc%	chr17:16347304-16347560(+)$1	256	100	127	10.5519
dd22ffffffggggggg"""ffffffm	chr2:58386616-58386852(-)$1	236	182	209	10.3759
eeeee[ddddggggggg"""dddd[cc	chr20:31052641-31052903(-)$1	262	15	42	11.0161
d!!ccc[bb!!dddd[a"""dddd[a[	chr16:24551801-24552072(+)$1	271	33	60	10.7328
f[ccc"""ddddccc[bb!!ccc!!bb	chr17:26988771-26989098(-)$1	327	242	269	10.5726
cccccc####ggggggg"""ccc[ddd	chr7:32910215-32910532(-)$1	317	154	181	13.3864
c[ccc[dddd[ffffff"""ggggggg	chr19:4037221-4037484(+)$1	263	76	103	11.0804

#otherMatches

#Seq PSSM
UGUGUCUUUGUGUGGGGGAGGGAGGGU	chr15:44088195-44088536(+)$1	341	101	128	9.3715
UUACAUGGAUUGGACUUGAAUUAAAUA	chr15:49620634-49620945(+)$1	311	31	58	12.1199
CAUCAUGACCGGGUCCUAUAACAACUU	chr10:133769016-133769312(+)$1	296	174	201	11.1266
AGUGUUCAAAUGGCAGGCGGGGGGUCG	chr12:123997759-123998014(-)$1	255	152	179	9.3067
CUGUGGAAGUGUAUUUAUACCAAGAUG	chr2:58386562-58386816(-)$1	254	146	173	10.3759
GAAGGUGUAGAGGAAGAUGAAGGAUUU	chr14:71540090-71540388(+)$1	298	209	236	9.0251
AUUGCUGAUUUUGUCAUCUUCCCACCU	chr3:120357302-120357626(-)$1	324	252	279	10.1046
UUUCUUAAAGGCAUUUUGGUUUUUUAA	chr16:2821324-2821616(+)$1	292	7	34	12.3588
CUGUGUUGUCUGGGGGGCUUCCGGCCA	chr17:16347304-16347560(+)$1	256	100	127	10.5519
CUGUGGAAGUGUAUUUAUACCAAGAUG	chr2:58386616-58386852(-)$1	236	182	209	10.3759
CUGAACAUCAUCUGCAGCUUGGACACC	chr20:31052641-31052903(-)$1	262	15	42	11.0161
UUCGGUGUCUUUGAGUGUUUUGUGUGU	chr16:24551801-24552072(+)$1	271	33	60	10.7328
GAGCGCUGUGGGAGCGUCCAGCCUGGG	chr17:26988771-26989098(-)$1	327	242	269	10.5726
AGUGCUAAAAGAAUGGUGGAGCACAAG	chr7:32910215-32910532(-)$1	317	154	181	13.3864
GAGGGAUGGAGGGCUGGGGAGUUGGGG	chr19:4037221-4037484(+)$1	263	76	103	11.0804

#DB
((((((....((((((..(((((((((	chr15:44088195-44088536(+)$1	1	101	128	9.3715
..((..(((.(((((((...((((..(	chr15:49620634-49620945(+)$1	1	31	58	12.1199
(.(((.....(((((.....(((..((	chr10:133769016-133769312(+)$1	1	174	201	11.1266
.(((((....(((..(((..(((((((	chr12:123997759-123998014(-)$1	1	152	179	9.3067
))..))))))(((((((...((((((.	chr2:58386562-58386816(-)$1	1	146	173	10.3759
((((((((.((((((.(((.(((..((	chr14:71540090-71540388(+)$1	1	209	236	9.0251
..((..(.((((((((.(..(((.(((	chr3:120357302-120357626(-)$1	1	252	279	10.1046
(((((.....(((((((...((((((.	chr16:2821324-2821616(+)$1	1	7	34	12.3588
(((((((.(((((((((...((.(((.	chr17:16347304-16347560(+)$1	1	100	127	10.5519
))..))))))(((((((...((((((.	chr2:58386616-58386852(-)$1	1	182	209	10.3759
(((((.(((((((((((...((((.((	chr20:31052641-31052903(-)$1	1	15	42	11.0161
(..(((.((..((((.(...((((.(.	chr16:24551801-24552072(+)$1	1	33	60	10.7328
(.(((...(((((((.((..(((..((	chr17:26988771-26989098(-)$1	1	242	269	10.5726
((((((....(((((((...(((.(((	chr7:32910215-32910532(-)$1	1	154	181	13.3864
(.(((.((((.((((((...(((((((	chr19:4037221-4037484(+)$1	1	76	103	11.0804

#PSSM
d : 0.26	c : 0.20	f : 0.20	! : 0.13	: : 0.06	i : 0.06	e : 0.06	
d : 0.20	! : 0.20	[ : 0.20	e : 0.13	f : 0.13	i : 0.06	c : 0.06	
c : 0.26	b : 0.13	e : 0.13	2 : 0.13	f : 0.13	d : 0.06	i : 0.06	! : 0.06	
c : 0.33	b : 0.13	e : 0.13	2 : 0.13	f : 0.13	d : 0.06	i : 0.06	
c : 0.39	f : 0.20	! : 0.13	e : 0.13	d : 0.06	i : 0.06	
c : 0.20	! : 0.13	$ : 0.13	f : 0.13	[ : 0.13	d : 0.06	e : 0.06	i : 0.06	" : 0.06	
# : 0.20	c : 0.13	$ : 0.13	f : 0.13	d : 0.13	i : 0.06	a : 0.06	[ : 0.06	" : 0.06	
# : 0.20	$ : 0.13	f : 0.13	[ : 0.13	d : 0.13	c : 0.06	i : 0.06	b : 0.06	" : 0.06	
# : 0.20	d : 0.20	$ : 0.13	f : 0.13	c : 0.06	[ : 0.06	h : 0.06	i : 0.06	b : 0.06	
# : 0.20	f : 0.20	d : 0.20	$ : 0.13	[ : 0.06	h : 0.06	i : 0.06	! : 0.06	
g : 0.39	f : 0.13	e : 0.06	c : 0.06	h : 0.06	i : 0.06	! : 0.06	d : 0.06	[ : 0.06	
g : 0.39	f : 0.20	d : 0.13	e : 0.06	c : 0.06	h : 0.06	i : 0.06	
g : 0.39	f : 0.20	c : 0.13	e : 0.06	h : 0.06	i : 0.06	d : 0.06	
g : 0.39	f : 0.20	e : 0.06	! : 0.06	h : 0.06	i : 0.06	d : 0.06	c : 0.06	
g : 0.39	f : 0.20	e : 0.06	! : 0.06	h : 0.06	i : 0.06	d : 0.06	c : 0.06	
g : 0.39	[ : 0.20	f : 0.13	$ : 0.06	c : 0.06	h : 0.06	i : 0.06	
g : 0.39	c : 0.13	! : 0.06	$ : 0.06	[ : 0.06	i : 0.06	a : 0.06	b : 0.06	f : 0.06	
" : 0.60	c : 0.13	! : 0.06	$ : 0.06	a : 0.06	b : 0.06	
" : 0.60	! : 0.20	c : 0.13	$ : 0.06	
" : 0.60	! : 0.20	c : 0.06	$ : 0.06	[ : 0.06	
c : 0.39	f : 0.26	d : 0.20	b : 0.06	g : 0.06	
c : 0.33	f : 0.26	d : 0.20	g : 0.13	b : 0.06	
c : 0.33	f : 0.26	d : 0.20	g : 0.13	[ : 0.06	
f : 0.26	d : 0.20	! : 0.20	g : 0.13	[ : 0.13	c : 0.06	
! : 0.26	f : 0.26	g : 0.13	c : 0.13	[ : 0.13	d : 0.06	
f : 0.33	c : 0.20	g : 0.13	! : 0.06	e : 0.06	a : 0.06	b : 0.06	d : 0.06	
c : 0.20	g : 0.13	b : 0.13	m : 0.13	f : 0.06	e : 0.06	$ : 0.06	% : 0.06	[ : 0.06	d : 0.06	

#score	161.50610161176667
#seq	15
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_transcript_m1_run1.txt

#BEAR
:::::ffffffmmmmffffff::	chr6:27100038-27100299(-)$1	261	179	202	16.9826
:::::ffffffmmmmffffff::	chr6:26055917-26056127(-)$1	210	135	158	16.9826
:::::ffffffmmmmffffff:f	chr6:26252152-26252401(+)$1	249	125	148	15.9400
:::::ffffffmmmmffffffbb	chr16:11931363-11931618(-)$1	255	135	158	16.2079
:::::ffffffmmmmffffff::	chr6:27798852-27799106(-)$1	254	130	153	16.9826
)))))ffffffmmmmffffff>>	chr11:118965477-118965698(-)$1	221	70	93	15.3970
:::::ffffffmmmmffffffbb	chr6:26285290-26285510(-)$1	220	131	154	16.2079
DD:::ffffffmmmmffffff::	chr6:26158665-26158934(+)$1	269	144	167	15.7935
:::::ffffffmmmmffffff::	chr6:26188889-26189109(-)$1	220	146	169	16.9826
+++++ffffffmmmmffffff55	chr6:26198912-26199117(-)$1	205	80	103	15.5641
:::::ffffffmmmmffffff::	chr6:27806765-27806972(+)$1	207	97	120	16.9826
:::::ffffffmmmmffffff::	chr6:26205025-26205291(+)$1	266	198	221	16.9826
:::::ffffffmmmmffffff::	chr6:25726191-25726442(-)$1	251	126	149	16.9826
:::::ffffffmmmmffffff::	chr6:26216395-26216649(-)$1	254	183	206	16.9826
:::::ffffffmmmmffffffbb	chr6:26285310-26285531(-)$1	221	152	175	16.2079
:::::ffffffmmmmffffff:E	chr6:26055932-26056152(-)$1	220	160	183	16.4752
:::::ffffffmmmmffffff::	chr6:27101168-27101387(+)$1	219	120	143	16.9826
:::::ffffffmmmmffffff::	chr6:26031785-26032007(-)$1	222	162	185	16.9826
:::::ffffffmmmmffffff::	chr6:27792098-27792318(+)$1	220	133	156	16.9826
:::::ffffffmmmmffffff::	chr6:27806730-27806944(+)$1	214	132	155	16.9826
:::::ffffffmmmmffffff::	chr6:26217549-26217763(+)$1	214	90	113	16.9826
GG:::ffffffmmmmffffff::	chr6:26033221-26033504(-)$1	283	158	181	16.2016
:::::ffffffmmmmffffff::	chr6:26205091-26205348(+)$1	257	132	155	16.9826
CC:::ffffffmmmmffffff::	chr6:26157167-26157441(+)$1	274	150	173	16.4062
:::::ffffffmmmmffffff::	chr6:26055927-26056132(-)$1	205	140	163	16.9826
:::::ffffffmmmmffffff::	chr6:25727431-25727664(+)$1	233	116	139	16.9826
+++++ffffffmmmmffffff77	chr6:26124801-26125016(+)$1	215	90	113	15.9206
:::::ffffffmmmmffffff::	chr6:27806670-27806886(+)$1	216	192	215	16.9826
+++++ffffffmmmmffffff77	chr6:26124750-26124979(+)$1	229	141	164	15.9206
:::::ffffffmmmmffffff::	chr6:26285277-26285486(-)$1	209	107	130	16.9826
:::::ffffffmmmmffffff::	chr6:27858058-27858280(-)$1	222	162	185	16.9826
:::::ffffffmmmmffffff::	chr6:27806744-27806965(+)$1	221	118	141	16.9826
:::::ffffffmmmmffffff:e	chr6:26234369-26234611(-)$1	242	146	169	16.0248
:::::ffffffmmmmffffff::	chr6:26055910-26056117(-)$1	207	125	148	16.9826
:::::ffffffmmmmffffffbb	chr6:26124816-26125063(+)$1	247	75	98	16.2079
)))))ffffffmmmmffffff>>	chr11:118965498-118965722(-)$1	224	94	117	15.3970
:::::ffffffmmmmffffff::	chr1:149783334-149783576(-)$1	242	116	139	16.9826
:::::ffffffmmmmffffff:c	chr6:26104348-26104600(+)$1	252	191	214	16.3354
CC:::ffffffmmmmffffff::	chr6:26250269-26250527(-)$1	258	134	157	16.4062
:::::ffffffmmmmffffff::	chr6:26250327-26250600(-)$1	273	207	230	16.9826
:::::ffffffmmmmffffff::	chr6:27857994-27858239(-)$1	245	121	144	16.9826
:::::ffffffmmmmffffff::	chr6:26217542-26217749(+)$1	207	97	120	16.9826
:::::ffffffmmmmffffff::	chr6:27776274-27776518(+)$1	244	145	168	16.9826
:::::ffffffmmmmffffff::	chr6:27792118-27792355(+)$1	237	113	136	16.9826
+++++ffffffmmmmffffff77	chr6:26124779-26125000(+)$1	221	112	135	15.9206
EE:::ffffffmmmmffffff::	chr6:26123600-26123855(-)$1	255	135	158	16.0293
EE:::ffffffmmmmffffff::	chr6:26123595-26123800(-)$1	205	80	103	16.0293
BB:::ffffffmmmmffffff:c	chr1:149857649-149857870(-)$1	221	112	135	15.8010
:::::ffffffmmmmffffff::	chr6:27805558-27805834(-)$1	276	151	174	16.9826
:::::ffffffmmmmffffffCC	chr6:26027025-26027257(-)$1	232	108	131	16.2447
:::::ffffffmmmmffffffbb	chr6:26055872-26056103(-)$1	231	111	134	16.2079
:::::ffffffmmmmffffff:f	chr1:149821745-149821998(-)$1	253	109	132	15.9400
:::::ffffffmmmmffffff::	chr6:27806700-27806930(+)$1	230	162	185	16.9826
:::::ffffffmmmmffffff::	chr6:27107355-27107598(+)$1	243	72	95	16.9826
)))))ffffffmmmmffffff>>	chr11:118965445-118965677(-)$1	232	49	72	15.3970
)))))ffffffmmmmffffff>>	chr11:118965522-118965771(-)$1	249	143	166	15.3970
FF:::ffffffmmmmffffff::	chr6:26188839-26189089(-)$1	250	126	149	15.8772
+++++ffffffmmmmffffff55	chr6:26198917-26199177(-)$1	260	140	163	15.5641
+++++ffffffmmmmffffff55	chr6:26198977-26199246(-)$1	269	209	232	15.5641
:::::ffffffmmmmffffff::	chr6:26200065-26200292(+)$1	227	125	148	16.9826
:::::ffffffmmmmffffff::	chr6:27860421-27860671(-)$1	250	169	192	16.9826
+++++ffffffmmmmffffff77	chr6:26124687-26124937(+)$1	250	204	227	15.9206
:::::ffffffmmmmffffff::	chr6:26043355-26043591(-)$1	236	111	134	16.9826
:::::ffffffmmmmffffff::	chr6:26200104-26200315(+)$1	211	86	109	16.9826
:::::ffffffmmmmffffff::	chr6:27860378-27860621(-)$1	243	119	142	16.9826
:::::ffffffmmmmffffff::	chr1:149814934-149815166(+)$1	232	122	145	16.9826
CCC::ffffffmmmmffffff::	chr6:27776204-27776455(+)$1	251	215	238	16.0363
:::::ffffffmmmmffffff::	chr6:27100006-27100238(-)$1	232	118	141	16.9826
:::::ffffffmmmmffffff::	chr6:26055952-26056192(-)$1	240	200	223	16.9826
:::::ffffffmmmmffffff::	chr6:27114040-27114250(-)$1	210	85	108	16.9826
GG:::ffffffmmmmffffff::	chr6:26200100-26200304(+)$1	204	90	113	16.2016
:::::ffffffmmmmffffff::	chr6:27107261-27107520(+)$1	259	166	189	16.9826
:::::ffffffmmmmffffff::	chr6:25727464-25727672(+)$1	208	83	106	16.9826
:::::ffffffmmmmffffff::	chr6:26124737-26124950(+)$1	213	154	177	16.9826
:::::ffffffmmmmffffff::	chr6:26031720-26031964(-)$1	244	119	142	16.9826
:::::ffffffmmmmffffff::	chr6:26196976-26197224(-)$1	248	187	210	16.9826
:::::ffffffmmmmffffff::	chr6:27858039-27858258(-)$1	219	140	163	16.9826
:::::ffffffmmmmffffff::	chr6:27806772-27806986(+)$1	214	90	113	16.9826

#otherMatches

#Seq PSSM
CUAACGGCUCUUUUAAGAGCCAC	chr6:27100038-27100299(-)$1	261	179	202	16.9826
CAAAAGGCUCUUUUCAGAGCCAC	chr6:26055917-26056127(-)$1	210	135	158	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:26252152-26252401(+)$1	249	125	148	15.9400
uguaaucccagcacuuugggagg	chr16:11931363-11931618(-)$1	255	135	158	16.2079
CAAAAGGCCCUUUUUAGGGCCCC	chr6:27798852-27799106(-)$1	254	130	153	16.9826
ACAAAGGCCCUUUUAAGGGCCAC	chr11:118965477-118965698(-)$1	221	70	93	15.3970
CCAAAGGCCCUUUUCAGGGCCGC	chr6:26285290-26285510(-)$1	220	131	154	16.2079
CCAAAGGCUCUUUUAAGAGCCAC	chr6:26158665-26158934(+)$1	269	144	167	15.7935
CCAACGGCCCUUUUCAGGGCCAC	chr6:26188889-26189109(-)$1	220	146	169	16.9826
ACAAAGGCUCUUUUCAGAGCCAC	chr6:26198912-26199117(-)$1	205	80	103	15.5641
CCAAAGGCUCUUUUCAGAGCCAC	chr6:27806765-27806972(+)$1	207	97	120	16.9826
UCAAAGGCCCUUUUCAGGGCCGC	chr6:26205025-26205291(+)$1	266	198	221	16.9826
CAAAAGGCUCUUUUCAGAGCCAC	chr6:25726191-25726442(-)$1	251	126	149	16.9826
UCAAAGGCUCUUUUCAGAGCCAC	chr6:26216395-26216649(-)$1	254	183	206	16.9826
CCAAAGGCCCUUUUCAGGGCCGC	chr6:26285310-26285531(-)$1	221	152	175	16.2079
CAAAAGGCUCUUUUCAGAGCCAC	chr6:26055932-26056152(-)$1	220	160	183	16.4752
CCAACGGCUCUUUUCAGGGCCAC	chr6:27101168-27101387(+)$1	219	120	143	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:26031785-26032007(-)$1	222	162	185	16.9826
UAAAAGGCCCUUUUCAGGGCCAC	chr6:27792098-27792318(+)$1	220	133	156	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:27806730-27806944(+)$1	214	132	155	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:26217549-26217763(+)$1	214	90	113	16.9826
GCAAAGGCUCUUUUCAGAGCCAC	chr6:26033221-26033504(-)$1	283	158	181	16.2016
UCAAAGGCCCUUUUCAGGGCCGC	chr6:26205091-26205348(+)$1	257	132	155	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:26157167-26157441(+)$1	274	150	173	16.4062
CAAAAGGCUCUUUUCAGAGCCAC	chr6:26055927-26056132(-)$1	205	140	163	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:25727431-25727664(+)$1	233	116	139	16.9826
CCAAAGGCUCUUUUCAGAGCCCC	chr6:26124801-26125016(+)$1	215	90	113	15.9206
CCAAAGGCUCUUUUCAGAGCCAC	chr6:27806670-27806886(+)$1	216	192	215	16.9826
CCAAAGGCUCUUUUCAGAGCCCC	chr6:26124750-26124979(+)$1	229	141	164	15.9206
CCAAAGGCCCUUUUCAGGGCCGC	chr6:26285277-26285486(-)$1	209	107	130	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:27858058-27858280(-)$1	222	162	185	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:27806744-27806965(+)$1	221	118	141	16.9826
UAAACGGCUCUUUUCAGAGCCAC	chr6:26234369-26234611(-)$1	242	146	169	16.0248
CAAAAGGCUCUUUUCAGAGCCAC	chr6:26055910-26056117(-)$1	207	125	148	16.9826
CCAAAGGCUCUUUUCAGAGCCCC	chr6:26124816-26125063(+)$1	247	75	98	16.2079
ACAAAGGCCCUUUUAAGGGCCAC	chr11:118965498-118965722(-)$1	224	94	117	15.3970
CCAAAGGCUCUUUUCAGAGCCAC	chr1:149783334-149783576(-)$1	242	116	139	16.9826
CCAAAGGCCCUUUUCAGGGCCGC	chr6:26104348-26104600(+)$1	252	191	214	16.3354
CCAAAGGCUCUUUUCAGAGCCAC	chr6:26250269-26250527(-)$1	258	134	157	16.4062
CCAAAGGCUCUUUUCAGAGCCAC	chr6:26250327-26250600(-)$1	273	207	230	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:27857994-27858239(-)$1	245	121	144	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:26217542-26217749(+)$1	207	97	120	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:27776274-27776518(+)$1	244	145	168	16.9826
UAAAAGGCCCUUUUCAGGGCCAC	chr6:27792118-27792355(+)$1	237	113	136	16.9826
CCAAAGGCUCUUUUCAGAGCCCC	chr6:26124779-26125000(+)$1	221	112	135	15.9206
CCAAAGGCUCUUUUAAGAGCCAC	chr6:26123600-26123855(-)$1	255	135	158	16.0293
CCAAAGGCUCUUUUAAGAGCCAC	chr6:26123595-26123800(-)$1	205	80	103	16.0293
CCAAAGGCUCUUUUCAGAGCCAC	chr1:149857649-149857870(-)$1	221	112	135	15.8010
AAAAAGGUUCUUUUCAGAGCCAC	chr6:27805558-27805834(-)$1	276	151	174	16.9826
CCAAUGGCCCUUUUCAGGGCCGC	chr6:26027025-26027257(-)$1	232	108	131	16.2447
CAAAAGGCUCUUUUCAGAGCCAC	chr6:26055872-26056103(-)$1	231	111	134	16.2079
CCAAAGGCUCUUUUCAGGGCCAU	chr1:149821745-149821998(-)$1	253	109	132	15.9400
CCAAAGGCUCUUUUCAGAGCCAC	chr6:27806700-27806930(+)$1	230	162	185	16.9826
AAAAAGGCCCUUUUUAGGGCCCC	chr6:27107355-27107598(+)$1	243	72	95	16.9826
ACAAAGGCCCUUUUAAGGGCCAC	chr11:118965445-118965677(-)$1	232	49	72	15.3970
ACAAAGGCCCUUUUAAGGGCCAC	chr11:118965522-118965771(-)$1	249	143	166	15.3970
CCAACGGCCCUUUUCAGGGCCAC	chr6:26188839-26189089(-)$1	250	126	149	15.8772
ACAAAGGCUCUUUUCAGAGCCAC	chr6:26198917-26199177(-)$1	260	140	163	15.5641
ACAAAGGCUCUUUUCAGAGCCAC	chr6:26198977-26199246(-)$1	269	209	232	15.5641
CCAAAGGCUCUUUUAAGAGCCAC	chr6:26200065-26200292(+)$1	227	125	148	16.9826
CAAAAGGCUCUUUUCAGAGCCAC	chr6:27860421-27860671(-)$1	250	169	192	16.9826
CCAAAGGCUCUUUUCAGAGCCCC	chr6:26124687-26124937(+)$1	250	204	227	15.9206
CCAAAGGCUCUUUUCAGAGCCAC	chr6:26043355-26043591(-)$1	236	111	134	16.9826
CCAAAGGCUCUUUUAAGAGCCAC	chr6:26200104-26200315(+)$1	211	86	109	16.9826
CAAAAGGCUCUUUUCAGAGCCAC	chr6:27860378-27860621(-)$1	243	119	142	16.9826
CCAAAGGCUCUUUUCAGGGCCAC	chr1:149814934-149815166(+)$1	232	122	145	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:27776204-27776455(+)$1	251	215	238	16.0363
CUAACGGCUCUUUUAAGAGCCAC	chr6:27100006-27100238(-)$1	232	118	141	16.9826
CAAAAGGCUCUUUUCAGAGCCAC	chr6:26055952-26056192(-)$1	240	200	223	16.9826
CCAAAGGCUCUUUUAAGAGCCAC	chr6:27114040-27114250(-)$1	210	85	108	16.9826
CCAAAGGCUCUUUUAAGAGCCAC	chr6:26200100-26200304(+)$1	204	90	113	16.2016
AAAAAGGCCCUUUUUAGGGCCCC	chr6:27107261-27107520(+)$1	259	166	189	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:25727464-25727672(+)$1	208	83	106	16.9826
CCAAAGGCUCUUUUCAGAGCCCC	chr6:26124737-26124950(+)$1	213	154	177	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:26031720-26031964(-)$1	244	119	142	16.9826
CCAAAGGCUCUUUUCAGAGCCAA	chr6:26196976-26197224(-)$1	248	187	210	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:27858039-27858258(-)$1	219	140	163	16.9826
CCAAAGGCUCUUUUCAGAGCCAC	chr6:27806772-27806986(+)$1	214	90	113	16.9826

#DB
.....((((((....))))))..	chr6:27100038-27100299(-)$1	1	179	202	16.9826
.....((((((....))))))..	chr6:26055917-26056127(-)$1	1	135	158	16.9826
.....((((((....)))))).(	chr6:26252152-26252401(+)$1	1	125	148	15.9400
.....((((((....))))))((	chr16:11931363-11931618(-)$1	1	135	158	16.2079
.....((((((....))))))..	chr6:27798852-27799106(-)$1	1	130	153	16.9826
.....((((((....))))))..	chr11:118965477-118965698(-)$1	1	70	93	15.3970
.....((((((....))))))((	chr6:26285290-26285510(-)$1	1	131	154	16.2079
))...((((((....))))))..	chr6:26158665-26158934(+)$1	1	144	167	15.7935
.....((((((....))))))..	chr6:26188889-26189109(-)$1	1	146	169	16.9826
.....((((((....))))))..	chr6:26198912-26199117(-)$1	1	80	103	15.5641
.....((((((....))))))..	chr6:27806765-27806972(+)$1	1	97	120	16.9826
.....((((((....))))))..	chr6:26205025-26205291(+)$1	1	198	221	16.9826
.....((((((....))))))..	chr6:25726191-25726442(-)$1	1	126	149	16.9826
.....((((((....))))))..	chr6:26216395-26216649(-)$1	1	183	206	16.9826
.....((((((....))))))((	chr6:26285310-26285531(-)$1	1	152	175	16.2079
.....((((((....)))))).)	chr6:26055932-26056152(-)$1	1	160	183	16.4752
.....((((((....))))))..	chr6:27101168-27101387(+)$1	1	120	143	16.9826
.....((((((....))))))..	chr6:26031785-26032007(-)$1	1	162	185	16.9826
.....((((((....))))))..	chr6:27792098-27792318(+)$1	1	133	156	16.9826
.....((((((....))))))..	chr6:27806730-27806944(+)$1	1	132	155	16.9826
.....((((((....))))))..	chr6:26217549-26217763(+)$1	1	90	113	16.9826
((...((((((....))))))..	chr6:26033221-26033504(-)$1	1	158	181	16.2016
.....((((((....))))))..	chr6:26205091-26205348(+)$1	1	132	155	16.9826
((...((((((....))))))..	chr6:26157167-26157441(+)$1	1	150	173	16.4062
.....((((((....))))))..	chr6:26055927-26056132(-)$1	1	140	163	16.9826
.....((((((....))))))..	chr6:25727431-25727664(+)$1	1	116	139	16.9826
.....((((((....))))))..	chr6:26124801-26125016(+)$1	1	90	113	15.9206
.....((((((....))))))..	chr6:27806670-27806886(+)$1	1	192	215	16.9826
.....((((((....))))))..	chr6:26124750-26124979(+)$1	1	141	164	15.9206
.....((((((....))))))..	chr6:26285277-26285486(-)$1	1	107	130	16.9826
.....((((((....))))))..	chr6:27858058-27858280(-)$1	1	162	185	16.9826
.....((((((....))))))..	chr6:27806744-27806965(+)$1	1	118	141	16.9826
.....((((((....)))))).(	chr6:26234369-26234611(-)$1	1	146	169	16.0248
.....((((((....))))))..	chr6:26055910-26056117(-)$1	1	125	148	16.9826
.....((((((....))))))((	chr6:26124816-26125063(+)$1	1	75	98	16.2079
.....((((((....))))))..	chr11:118965498-118965722(-)$1	1	94	117	15.3970
.....((((((....))))))..	chr1:149783334-149783576(-)$1	1	116	139	16.9826
.....((((((....)))))).(	chr6:26104348-26104600(+)$1	1	191	214	16.3354
((...((((((....))))))..	chr6:26250269-26250527(-)$1	1	134	157	16.4062
.....((((((....))))))..	chr6:26250327-26250600(-)$1	1	207	230	16.9826
.....((((((....))))))..	chr6:27857994-27858239(-)$1	1	121	144	16.9826
.....((((((....))))))..	chr6:26217542-26217749(+)$1	1	97	120	16.9826
.....((((((....))))))..	chr6:27776274-27776518(+)$1	1	145	168	16.9826
.....((((((....))))))..	chr6:27792118-27792355(+)$1	1	113	136	16.9826
.....((((((....))))))..	chr6:26124779-26125000(+)$1	1	112	135	15.9206
((...((((((....))))))..	chr6:26123600-26123855(-)$1	1	135	158	16.0293
((...((((((....))))))..	chr6:26123595-26123800(-)$1	1	80	103	16.0293
))...((((((....)))))).(	chr1:149857649-149857870(-)$1	1	112	135	15.8010
.....((((((....))))))..	chr6:27805558-27805834(-)$1	1	151	174	16.9826
.....((((((....))))))((	chr6:26027025-26027257(-)$1	1	108	131	16.2447
.....((((((....))))))((	chr6:26055872-26056103(-)$1	1	111	134	16.2079
.....((((((....)))))).(	chr1:149821745-149821998(-)$1	1	109	132	15.9400
.....((((((....))))))..	chr6:27806700-27806930(+)$1	1	162	185	16.9826
.....((((((....))))))..	chr6:27107355-27107598(+)$1	1	72	95	16.9826
.....((((((....))))))..	chr11:118965445-118965677(-)$1	1	49	72	15.3970
.....((((((....))))))..	chr11:118965522-118965771(-)$1	1	143	166	15.3970
((...((((((....))))))..	chr6:26188839-26189089(-)$1	1	126	149	15.8772
.....((((((....))))))..	chr6:26198917-26199177(-)$1	1	140	163	15.5641
.....((((((....))))))..	chr6:26198977-26199246(-)$1	1	209	232	15.5641
.....((((((....))))))..	chr6:26200065-26200292(+)$1	1	125	148	16.9826
.....((((((....))))))..	chr6:27860421-27860671(-)$1	1	169	192	16.9826
.....((((((....))))))..	chr6:26124687-26124937(+)$1	1	204	227	15.9206
.....((((((....))))))..	chr6:26043355-26043591(-)$1	1	111	134	16.9826
.....((((((....))))))..	chr6:26200104-26200315(+)$1	1	86	109	16.9826
.....((((((....))))))..	chr6:27860378-27860621(-)$1	1	119	142	16.9826
.....((((((....))))))..	chr1:149814934-149815166(+)$1	1	122	145	16.9826
)))..((((((....))))))..	chr6:27776204-27776455(+)$1	1	215	238	16.0363
.....((((((....))))))..	chr6:27100006-27100238(-)$1	1	118	141	16.9826
.....((((((....))))))..	chr6:26055952-26056192(-)$1	1	200	223	16.9826
.....((((((....))))))..	chr6:27114040-27114250(-)$1	1	85	108	16.9826
((...((((((....))))))..	chr6:26200100-26200304(+)$1	1	90	113	16.2016
.....((((((....))))))..	chr6:27107261-27107520(+)$1	1	166	189	16.9826
.....((((((....))))))..	chr6:25727464-25727672(+)$1	1	83	106	16.9826
.....((((((....))))))..	chr6:26124737-26124950(+)$1	1	154	177	16.9826
.....((((((....))))))..	chr6:26031720-26031964(-)$1	1	119	142	16.9826
.....((((((....))))))..	chr6:26196976-26197224(-)$1	1	187	210	16.9826
.....((((((....))))))..	chr6:27858039-27858258(-)$1	1	140	163	16.9826
.....((((((....))))))..	chr6:27806772-27806986(+)$1	1	90	113	16.9826

#PSSM
: : 0.73	+ : 0.08	) : 0.05	C : 0.03	G : 0.02	E : 0.02	D : 0.01	B : 0.01	F : 0.01	
: : 0.73	+ : 0.08	) : 0.05	C : 0.03	G : 0.02	E : 0.02	D : 0.01	B : 0.01	F : 0.01	
: : 0.84	+ : 0.08	) : 0.05	C : 0.01	
: : 0.85	+ : 0.08	) : 0.05	
: : 0.85	+ : 0.08	) : 0.05	
f : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
m : 0.99	
m : 0.99	
m : 0.99	
m : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
: : 0.78	b : 0.06	> : 0.05	7 : 0.05	5 : 0.03	C : 0.01	
: : 0.70	b : 0.06	> : 0.05	7 : 0.05	5 : 0.03	f : 0.02	c : 0.02	E : 0.01	e : 0.01	C : 0.01	

#score	1291.94718252191
#seq	78
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_UTR_m1_run2.txt

#BEAR
======####ccc[ddddlllddddccc4444=======	chr5:177631436-177631735(+)$1	299	112	151	15.4563
ddd"""ggggggg[cccooooooccc]ggggggg22ddd	chr6:26104073-26104343(+)$1	270	82	121	12.7452
===!!ccc[bbbb[ccclllccc]bb]bb]ccc22====	chr17:41150359-41150589(+)$1	230	181	220	12.8479
FFFFiiiiiiiii[cccnnnnnccc4444iiiiiiiii:	chr1:145438402-145438632(+)$1	230	15	54	11.3311
[ccc[ccc[a!!ccc[ammmma]ccc22accc]ccc]ee	chr7:22862287-22862557(-)$1	270	228	267	14.2980
============"""cccnnnnnccc]============	chr17:26903758-26904015(-)$1	257	27	66	13.8238
=========[eeeee[ammmma]eeeee]==========	chr3:197677705-197677948(+)$1	243	128	167	13.6362
eee!!a####ccc[eeeeellleeeee]ccc333a22ee	chr11:5291012-5291270(-)$1	258	209	248	11.5693
cccccccc[ccc[eeeeemmmmeeeee]ccc]ccc]ccc	chr6:10747895-10748216(+)$1	321	135	174	11.8252
gggggga"""ccc[cccmmmmcccccc333a]ggggggg	chr19:18684002-18684228(+)$1	226	131	170	17.0296
fffff[bb!!ccc[acccooooooccc]a]ccc4444bb	chr6:26285544-26285845(-)$1	301	12	51	12.6173
==========ffffffnnnnnffffff333=========	chr12:8088512-8088867(-)$1	355	4	43	12.1347
===========a[ddddoooooodddd]a]=========	chr2:27294368-27294613(-)$1	245	170	209	15.4230
ggg[bb$$$$$ccc[bbmmmmbb]ccc333bb]gggggg	chr8:100905766-100906034(-)$1	268	34	73	12.9937
FFFFFFa!!ccc[acccooooooccc]a]ccc22aiiii	chr6:26204757-26205049(+)$1	292	10	49	12.4378
ffff[bb"""ccc!!bbmmmmbb333ccc]bb22fffff	chr1:45987397-45987650(-)$1	253	71	110	12.1202
beeeee####ggggggglllggggggg22eeeee]bb]a	chr11:122932670-122932931(-)$1	261	205	244	10.6587
ddddaccc[eeeeecccmmmmccc4444eeeee]ccc]a	chr12:6643913-6644128(+)$1	215	5	44	12.4432
e!!bbccc!!bb[ddddmmmmdddd]bb4444ccc]bb2	chr6:24720871-24721156(-)$1	285	157	196	12.8613
[ccc[ccc[dddd[ccclllcccdddd22ccc]ccc]a2	chr12:56122635-56122890(-)$1	255	129	168	12.9765
:ddddcccccc!!ddddoooooodddd333ccc22ccc]	chr7:102119211-102119453(-)$1	242	0	39	12.8469
cc!!cccdddd"""ddddmmmmdddd333dddd]ccc]c	chr10:75541713-75542002(+)$1	289	43	82	12.2819
=ccc[dddd[ddddcccooooooccc22dddddddd]cc	chr17:26902392-26902664(-)$1	272	32	71	11.9258
iiiiiiiii[dddd[bbmmmmbbddddiiiiiiiii]dd	chr12:120875820-120876105(+)$1	285	136	175	12.7812
gggggg[==========mmmm==========>>>>>>>>	chr10:7830042-7830320(+)$1	278	62	101	12.4930
dd[ccc!!cccbb!!bbmmmmbb4444bb]ccc22cccd	chr2:61765242-61765499(-)$1	257	152	191	12.6568
hhhhhhhh!!a[ddddammmma]dddd]a4444hhhhhh	chr17:8286373-8286608(-)$1	235	177	216	12.5257
cggggggg[ccc[ddddmmmmddddcccggggggg22cc	chr15:44580970-44581218(+)$1	248	197	236	13.6791
ggggggccc[bb[ddddmmmmdddd]bb]ccc4444ggg	chr5:177019109-177019432(+)$1	323	71	110	13.6135
hhhh!!ccc!!cccccclllccc]ccc22ccc22hhhhh	chr12:49524980-49525274(-)$1	294	14	53	12.7142
gggggg"""ccc!!bbqqqqqqqqbbccc333ggggggg	chr17:56429328-56429653(-)$1	325	62	101	10.4835
b[iiiiiiiii[a####bboooooobb333a]iiiiiii	chr20:57607210-57607495(-)$1	285	46	85	11.8724
ff!!eeeee$$$$$cccooooooccc4444eeeee333f	chr12:56510457-56510677(+)$1	220	175	214	13.0750
hhhhhhhh[ccc[ddddmmmmdddd333ccc]hhhhhhh	chr22:21998367-21998637(+)$1	270	139	178	12.7621
hhhhhhh"""cccddddmmmmdddd333ccc333hhhhh	chr21:35287931-35288190(-)$1	259	114	153	14.2096
eeeee####ccc[bb[ammmma]bb]ccc333eeeee]e	chr11:63742045-63742316(+)$1	271	181	220	12.3815
ddd[==========cccooooooccc]==========dd	chr3:52029768-52030022(-)$1	254	6	45	15.0053
c!!ffffff[ddddcccmmmmccc333ddddffffff22	chr1:39491924-39492171(+)$1	247	46	85	11.2069
""dddd!!bb[ccc[bbmmmmbbccc]bb]dddd]ccc]	chr19:40336842-40337096(-)$1	254	142	181	11.1377
[ccc[bb####ddddoooooodddd22bbcccddddccc	chr15:66795738-66795962(-)$1	224	105	144	11.5153
[eeeee"""bb"""cccmmmmccc333bb]eeeee]bb4	chr2:98262431-98262750(+)$1	319	36	75	13.1550
iiiiii####bbvvvvvvvvvvvvvbb4444iiiiiiii	chr6:31704109-31704393(-)$1	284	26	65	10.9175
)ggggggg!!bb[ddddmmmmddddbb22ggggggg22e	chr1:26232779-26232985(-)$1	206	69	108	13.1523
fffff[eeeee"""cccmmmmccc333eeeee22fffff	chr19:36139135-36139405(+)$1	270	219	258	11.7307
ddd[ccc!!ccc"""ccclllccccccccc]dddd]ddd	chrX:152961487-152961763(+)$1	276	52	91	13.0083
!!ccc####ccc!!cccmmmmccc]ccc4444ccc]eee	chr12:56510332-56510543(+)$1	211	121	160	15.3949
dd"""dddd[bb!!cccoooooocccbb]dddd22dddd	chr5:132202459-132202692(+)$1	233	13	52	11.8906
!!dddd####ccc####==========cccccc[ccc[b	chr12:49658768-49659070(+)$1	302	130	169	10.8199
Bffffff"""bb[ddddoooooodddd]bb333ffffff	chr12:131357028-131357263(+)$1	235	30	69	11.7193
cc[ccc[ffffff[cccmmmmccc]ffffffccc]ccc2	chr2:170655287-170655538(+)$1	251	72	111	11.9340
b[eeeee[eeeee[cccooooooccceeeee22eeeee]	chr12:111180494-111180746(-)$1	252	88	127	11.1167
ggg[ccc[a[ccc[cccmmmmcccccc]a]ccc22gggg	chr9:113018606-113018926(-)$1	320	39	78	15.8793
)ggggggg!!bb[ddddmmmmddddbb22ggggggg22e	chr1:26232785-26233010(-)$1	225	94	133	13.1523
ddcccdddd[a"""cccmmmmccca]dddd]ccc]dddd	chr8:30669989-30670286(-)$1	297	216	255	12.1758
ddccc[ccc####ddddlllddddccc]ccc]dddd]dd	chr7:25164717-25164985(-)$1	268	89	128	12.1383
ii[ccca[eeeeerrrrrrrrreeeee]a333ccc]iii	chr8:125551267-125551581(+)$1	314	244	283	10.3991
ggggggccc!!bbcccnnnnnccc22bb22ccc]ggggg	chr2:176046283-176046528(-)$1	245	192	231	11.8504
####eeeeeccc[a[bboooooobb]a]ccc]eeeee33	chr11:18548268-18548566(-)$1	298	58	97	11.6350
a[ggggggg!!bb[bbnnnnnbb]bb4444ggggggg]a	chr6:31704057-31704309(-)$1	252	79	118	11.7482

#otherMatches

#Seq PSSM
GCGGGACGGAGCUUGGCUGUUGGUCGGUGGGUUCCCGUG	chr5:177631436-177631735(+)$1	299	112	151	15.4563
CUUCCACUGCGAUAGGAAUCAUGUCUGGUCGCGGCAAAG	chr6:26104073-26104343(+)$1	270	82	121	12.7452
GGGUCGAAGGUCCGGGCGGCGCCGGGUGCAUUCCUUCCC	chr17:41150359-41150589(+)$1	230	181	220	12.8479
GCCUCCGGGCCAGCGCUCGCGUGGCUCUUCUGGCCCGGG	chr1:145438402-145438632(+)$1	230	15	54	11.3311
CGCUGGGGCUUUAUCCCUCUUGUGAUUUACCUGGGUCAG	chr7:22862287-22862557(-)$1	270	228	267	14.2980
GGGGGUGUGGUCAGGGCGGGGCAUGCAGGCCACGCCCCC	chr17:26903758-26904015(-)$1	257	27	66	13.8238
GAACUAUGUCUGGAAGGUACGCGUUUUAAAUAUAGUUCU	chr3:197677705-197677948(+)$1	243	128	167	13.6362
UGUGGAAGAGGCUGGAGGUGAAGCCUUGGGCAGGUAAGC	chr11:5291012-5291270(-)$1	258	209	248	11.5693
CGCACGCAAUCGCGUUUCCGGAGAGACCUGGCUGCUGUG	chr6:10747895-10748216(+)$1	321	135	174	11.8252
CACUGGCAAAACCAUCACCCUUGAGGUCGAGCCCAGUGA	chr19:18684002-18684228(+)$1	226	131	170	17.0296
UAUGCGCGCUUUCAGUCUUCAAUUAGGUCCGAAUUCCCG	chr6:26285544-26285845(-)$1	301	12	51	12.6173
ggguggggcuggggGCUUGUCGCCCUUUCAGGCUCCACC	chr12:8088512-8088867(-)$1	355	4	43	12.1347
ACGGGCCAGCCCCGCCGUGGCCGUGGCCGUGGCUGGCCC	chr2:27294368-27294613(-)$1	245	170	209	15.4230
UGGGCGCACUAGAGGUCUUUUGAACUCCUUCGGCUACCG	chr8:100905766-100906034(-)$1	268	34	73	12.9937
AUGCGCGUUUUCAGUCUUCAUUUAGGUCCGAAUUCCCGG	chr6:26204757-26205049(+)$1	292	10	49	12.4378
GCAGCGCCCCGGAGAGCUCUUGCGCGUCUUGUUCUUGCC	chr1:45987397-45987650(-)$1	253	71	110	12.1202
AGCCUCCACACAGGCCUGUUGGGCUUGCUGAGGCUUGGG	chr11:122932670-122932931(-)$1	261	205	244	10.6587
GAGGCGUGUGUGUCGGCCGGGGCCACUAGGCGCUCACUG	chr12:6643913-6644128(+)$1	215	5	44	12.4432
GGGGGGGGAACGAGGCAGUACUGCCGCGGACGCUCACCA	chr6:24720871-24721156(-)$1	285	157	196	12.8613
GCGCAGCCAGCCUUGGGAAGCCCAGGUGAGGCCGCGGGG	chr12:56122635-56122890(-)$1	255	129	168	12.9765
GCAAGAUCCUCCAGCCCAACAGGGGGCGAUGAGCCGAUC	chr7:102119211-102119453(-)$1	242	0	39	12.8469
CGCCGAUUCGUCCAGCCCGUAGGGGUCACGCGAGGUCAC	chr10:75541713-75542002(+)$1	289	43	82	12.2819
AUUUGGCCCAUCUGGCCAGGAGAGGCAGCAGAGGGUGAG	chr17:26902392-26902664(-)$1	272	32	71	11.9258
UCUCGGCUGCUGGGUCGGUCCCGCCCACAGCUGGGGCGG	chr12:120875820-120876105(+)$1	285	136	175	12.7812
CUGGGGAGCUUCGGCGCAUGCGCGCUGAGGCCUGCCUGA	chr10:7830042-7830320(+)$1	278	62	101	12.4930
ggagcuacagcaucagcaagagcaacaguagcuacagcc	chr2:61765242-61765499(-)$1	257	152	191	12.6568
UUCUUGGGCAUGGUGGCUUCCGACCGCGGGGACCCCGAG	chr17:8286373-8286608(-)$1	235	177	216	12.5257
UGGGCUUCUGCCUGCAGGUGUCUGCGGCGAGGCCCCUAG	chr15:44580970-44581218(+)$1	248	197	236	13.6791
CGGCCGGCUGCGGCUGCGCAGGCAGGUGGAGCAAGAUGG	chr5:177019109-177019432(+)$1	323	71	110	13.6135
GGGCCAGCGACCGCGGCACCGCCUGUGCCCGCCCGCCCC	chr12:49524980-49525274(-)$1	294	14	53	12.7142
GAAGUGGUGGGCAUUCUGGGUAACGAGCUAUUUACUUCC	chr17:56429328-56429653(-)$1	325	62	101	10.4835
GUAGGAGGCGGUGAUUGGCAGGUCCGCACGCCCCGCCUC	chr20:57607210-57607495(-)$1	285	46	85	11.8724
AGCGAGGAGACGAAGGCAAGUCCGCCAUACCUCCUGAAC	chr12:56510457-56510677(+)$1	220	175	214	13.0750
UCUGCAGGGCCACUCUUGGCAGAGACUUUGGGUUUGUAG	chr22:21998367-21998637(+)$1	270	139	178	12.7621
CGGGAGAAGAUGGCUGCCCCAGCAGUGUCCGGGCUCUCC	chr21:35287931-35288190(-)$1	259	114	153	14.2096
GAUCCAUUCGUUGCCGCCGGAGGGGAAGCUUGGGAUCAU	chr11:63742045-63742316(+)$1	271	181	220	12.3815
UCUUCCGGGCUUCGGAACUUUUCUUCGCGGAGCCUGGGG	chr3:52029768-52030022(-)$1	254	6	45	15.0053
CAAACGUCUCGCUGAGGUCAUCCUUUACGGCAGGCGUCC	chr1:39491924-39492171(+)$1	247	46	85	11.2069
AACCAGGGCUCGCCAUGAAGCCAGGUCAGGCUGGGGUGA	chr19:40336842-40337096(-)$1	254	142	181	11.1377
GCCCACUGAUAUCGGUGUACUCCGAAAAGGGGGAGUCAU	chr15:66795738-66795962(-)$1	224	105	144	11.5153
GAGGAGAAAGAAGCCCGCCCCCGGAAGUCCCUCCUGUCU	chr2:98262431-98262750(+)$1	319	36	75	13.1550
CCGCCCCCCUCCAGUCCCCUCCCCAGGUUCAGGGCGGGG	chr6:31704109-31704393(-)$1	284	26	65	10.9175
GUGCUCAGAGUGUGGUCAGGCGGCUCGGACUGAGCAGGU	chr1:26232779-26232985(-)$1	206	69	108	13.1523
GAGCCGGACCCCAGCUUCCCUGAGAACGGGUUGAGGCUU	chr19:36139135-36139405(+)$1	270	219	258	11.7307
AUAGGCAAAACAAAAGCUUCGAGCUGUUGCGUGUGUGAG	chrX:152961487-152961763(+)$1	276	52	91	13.0083
UUUGGUUCCUGCGUUGGGAUUCCGUGUACAAUCCAUAGA	chr12:56510332-56510543(+)$1	211	121	160	15.3949
AGGAGUCUGGGGUUGGGGAUGGACCCCCGCGGGGACUGC	chr5:132202459-132202692(+)$1	233	13	52	11.8906
AGUGGGAGAUCCUUGUUGCCGUCCCUUCGCCUCCUUCAC	chr12:49658768-49659070(+)$1	302	130	169	10.8199
GGCGCGGGAGCGGGGCCGCCAUGGGCUGCGGGGCCGCGC	chr12:131357028-131357263(+)$1	235	30	69	11.7193
AGAGCUGCCGGGACGGUCCCCAUCUUCUUGGAGCGCUUU	chr2:170655287-170655538(+)$1	251	72	111	11.9340
GGAGCGGGGUGGCAGGGGGGGGACccgccgcggcugcug	chr12:111180494-111180746(-)$1	252	88	127	11.1167
cgcagcgacgggcgcggagguccggccgggcgcgcgcgc	chr9:113018606-113018926(-)$1	320	39	78	15.8793
GUGCUCAGAGUGUGGUCAGGCGGCUCGGACUGAGCAGGU	chr1:26232785-26233010(-)$1	225	94	133	13.1523
UCCCCCUGUGGGACCUggcgacggcggcggagggagagg	chr8:30669989-30670286(-)$1	297	216	255	12.1758
GGCGUGUCCUUGGACUUAGAGAGUGGGGACGUCCGGCUU	chr7:25164717-25164985(-)$1	268	89	128	12.1383
UCGUGGUGCGUCCAGAGGUAAGGGAUGGGGACCCAGGAC	chr8:125551267-125551581(+)$1	314	244	283	10.3991
CCCAGUAGGGACCCAUUCAUUGUGCCGGCGCCUCACUGG	chr2:176046283-176046528(-)$1	245	192	231	11.8504
UAGUGGAAGCGGAAGUGGUGUAGUGGUGCCGACUUCCUG	chr11:18548268-18548566(-)$1	298	58	97	11.6350
UGGGUGCAAGUAGGUCUGAUUGAGCUUGUGUUGUGCUGA	chr6:31704057-31704309(-)$1	252	79	118	11.7482

#DB
((((((....(((.((((...)))))))....)))))))	chr5:177631436-177631735(+)$1	1	112	151	15.4563
(((...(((((((.(((......))).)))))))..)))	chr6:26104073-26104343(+)$1	1	82	121	12.7452
(((..(((.((((.(((...))).)).)).)))..))))	chr17:41150359-41150589(+)$1	1	181	220	12.8479
(((((((((((((.(((.....)))....))))))))).	chr1:145438402-145438632(+)$1	1	15	54	11.3311
.(((.(((.(..(((.(....).)))..)))).))).))	chr7:22862287-22862557(-)$1	1	228	267	14.2980
((((((((((((...(((.....))).))))))))))))	chr17:26903758-26904015(-)$1	1	27	66	13.8238
(((((((((.(((((.(....).))))).))))))))))	chr3:197677705-197677948(+)$1	1	128	167	13.6362
(((..(....(((.(((((...))))).)))...)..))	chr11:5291012-5291270(-)$1	1	209	248	11.5693
((((((((.(((.(((((....))))).))).))).)))	chr6:10747895-10748216(+)$1	1	135	174	11.8252
(((((((...(((.(((....))))))...).)))))))	chr19:18684002-18684228(+)$1	1	131	170	17.0296
(((((.((..(((.((((......))).).)))....))	chr6:26285544-26285845(-)$1	1	12	51	12.6173
((((((((((((((((.....))))))...)))))))))	chr12:8088512-8088867(-)$1	1	4	43	12.1347
((((((((((((.((((......)))).).)))))))))	chr2:27294368-27294613(-)$1	1	170	209	15.4230
(((.((.....(((.((....)).)))...)).))))))	chr8:100905766-100906034(-)$1	1	34	73	12.9937
(((((((..(((.((((......))).).)))..)((((	chr6:26204757-26205049(+)$1	1	10	49	12.4378
((((.((...(((..((....))...))).))..)))))	chr1:45987397-45987650(-)$1	1	71	110	12.1202
((((((....(((((((...)))))))..))))).)).)	chr11:122932670-122932931(-)$1	1	205	244	10.6587
((((((((.((((((((....)))....))))).))).)	chr12:6643913-6644128(+)$1	1	5	44	12.4432
(..(((((..((.((((....)))).))....))).)).	chr6:24720871-24721156(-)$1	1	157	196	12.8613
.(((.(((.((((.(((...)))))))..))).))).).	chr12:56122635-56122890(-)$1	1	129	168	12.9765
.((((((((((..((((......))))...)))..))).	chr7:102119211-102119453(-)$1	1	0	39	12.8469
((..(((((((...((((....))))...)))).))).)	chr10:75541713-75542002(+)$1	1	43	82	12.2819
((((.((((.(((((((......)))..)))))))).))	chr17:26902392-26902664(-)$1	1	32	71	11.9258
(((((((((.((((.((....))))))))))))))).))	chr12:120875820-120876105(+)$1	1	136	175	12.7812
((((((.((((((((((....))))))))))........	chr10:7830042-7830320(+)$1	1	62	101	12.4930
((.(((..(((((..((....))....)).)))..))))	chr2:61765242-61765499(-)$1	1	152	191	12.6568
((((((((..(.(((((....).)))).)....))))))	chr17:8286373-8286608(-)$1	1	177	216	12.5257
((((((((.(((.((((....))))))))))))))..))	chr15:44580970-44581218(+)$1	1	197	236	13.6791
(((((((((.((.((((....)))).)).)))....)))	chr5:177019109-177019432(+)$1	1	71	110	13.6135
((((..(((..((((((...))).)))..)))..)))))	chr12:49524980-49525274(-)$1	1	14	53	12.7142
((((((...(((..((........)))))...)))))))	chr17:56429328-56429653(-)$1	1	62	101	10.4835
(.(((((((((.(....((......))...).)))))))	chr20:57607210-57607495(-)$1	1	46	85	11.8724
((..(((((.....(((......)))....)))))...)	chr12:56510457-56510677(+)$1	1	175	214	13.0750
((((((((.(((.((((....))))...))).)))))))	chr22:21998367-21998637(+)$1	1	139	178	12.7621
(((((((...(((((((....))))...)))...)))))	chr21:35287931-35288190(-)$1	1	114	153	14.2096
(((((....(((.((.(....).)).)))...))))).)	chr11:63742045-63742316(+)$1	1	181	220	12.3815
(((.(((((((((((((......))).))))))))))))	chr3:52029768-52030022(-)$1	1	6	45	15.0053
(..((((((.(((((((....)))...))))))))))..	chr1:39491924-39492171(+)$1	1	46	85	11.2069
..((((..((.(((.((....))))).)).)))).))).	chr19:40336842-40337096(-)$1	1	142	181	11.1377
.(((.((....((((......))))..))))))))))))	chr15:66795738-66795962(-)$1	1	105	144	11.5153
.(((((...((...(((....)))...)).))))).)).	chr2:98262431-98262750(+)$1	1	36	75	13.1550
((((((....((.............))....))))))))	chr6:31704109-31704393(-)$1	1	26	65	10.9175
.(((((((..((.((((....))))))..)))))))..)	chr1:26232779-26232985(-)$1	1	69	108	13.1523
(((((.(((((...(((....)))...)))))..)))))	chr19:36139135-36139405(+)$1	1	219	258	11.7307
(((.(((..(((...(((...))))))))).)))).)))	chrX:152961487-152961763(+)$1	1	52	91	13.0083
..(((....(((..(((....))).)))....))).)))	chr12:56510332-56510543(+)$1	1	121	160	15.3949
((...((((.((..(((......))))).))))..))))	chr5:132202459-132202692(+)$1	1	13	52	11.8906
..((((....(((....((((((((((((((((.(((.(	chr12:49658768-49659070(+)$1	1	130	169	10.8199
(((((((...((.((((......)))).))...))))))	chr12:131357028-131357263(+)$1	1	30	69	11.7193
((.(((.((((((.(((....))).))))))))).))).	chr2:170655287-170655538(+)$1	1	72	111	11.9340
(.(((((.(((((.(((......))))))))..))))).	chr12:111180494-111180746(-)$1	1	88	127	11.1167
(((.(((.(.(((.(((....)))))).).)))..))))	chr9:113018606-113018926(-)$1	1	39	78	15.8793
.(((((((..((.((((....))))))..)))))))..)	chr1:26232785-26233010(-)$1	1	94	133	13.1523
(((((((((.(...(((....)))).)))).))).))))	chr8:30669989-30670286(-)$1	1	216	255	12.1758
(((((.(((....((((...))))))).))).)))).))	chr7:25164717-25164985(-)$1	1	89	128	12.1383
((.((((.(((((.........))))).)...))).)))	chr8:125551267-125551581(+)$1	1	244	283	10.3991
(((((((((..(((((.....)))..))..))).)))))	chr2:176046283-176046528(-)$1	1	192	231	11.8504
....((((((((.(.((......)).).))).)))))..	chr11:18548268-18548566(-)$1	1	58	97	11.6350
(.(((((((..((.((.....)).))....))))))).)	chr6:31704057-31704309(-)$1	1	79	118	11.7482

#PSSM
d : 0.13	= : 0.11	g : 0.11	c : 0.08	[ : 0.06	f : 0.06	h : 0.06	e : 0.05	b : 0.05	i : 0.05	F : 0.03	) : 0.03	! : 0.03	: : 0.01	" : 0.01	B : 0.01	# : 0.01	a : 0.01	
g : 0.16	d : 0.15	c : 0.11	= : 0.10	f : 0.08	e : 0.06	! : 0.06	h : 0.06	i : 0.05	[ : 0.05	F : 0.03	" : 0.01	# : 0.01	
g : 0.18	c : 0.13	d : 0.11	= : 0.10	e : 0.08	f : 0.06	! : 0.06	h : 0.06	i : 0.05	[ : 0.05	F : 0.03	" : 0.01	# : 0.01	
c : 0.18	g : 0.15	= : 0.08	f : 0.08	! : 0.06	[ : 0.06	e : 0.06	d : 0.06	h : 0.06	i : 0.05	" : 0.03	F : 0.03	b : 0.01	# : 0.01	
c : 0.16	g : 0.15	= : 0.10	e : 0.10	[ : 0.08	i : 0.06	f : 0.06	! : 0.05	d : 0.05	h : 0.05	" : 0.03	b : 0.03	F : 0.01	a : 0.01	
c : 0.22	g : 0.15	= : 0.10	e : 0.08	d : 0.08	i : 0.06	[ : 0.05	b : 0.05	h : 0.05	# : 0.03	f : 0.03	" : 0.01	a : 0.01	F : 0.01	! : 0.01	
c : 0.23	# : 0.11	g : 0.08	= : 0.08	e : 0.06	i : 0.05	a : 0.05	b : 0.05	d : 0.05	h : 0.05	[ : 0.03	! : 0.03	" : 0.03	f : 0.03	$ : 0.01	
c : 0.18	# : 0.13	= : 0.10	" : 0.10	g : 0.08	! : 0.06	d : 0.06	i : 0.05	e : 0.05	[ : 0.05	h : 0.03	f : 0.03	b : 0.01	$ : 0.01	
# : 0.13	[ : 0.11	! : 0.11	= : 0.10	" : 0.10	c : 0.10	e : 0.08	d : 0.06	i : 0.05	g : 0.03	f : 0.03	$ : 0.01	b : 0.01	a : 0.01	
c : 0.18	[ : 0.13	! : 0.13	# : 0.11	= : 0.08	" : 0.06	e : 0.06	b : 0.05	i : 0.03	$ : 0.03	d : 0.03	g : 0.01	a : 0.01	f : 0.01	
c : 0.32	b : 0.15	e : 0.08	d : 0.08	! : 0.06	= : 0.06	g : 0.03	i : 0.03	f : 0.03	$ : 0.03	a : 0.03	# : 0.03	[ : 0.01	
c : 0.33	b : 0.18	d : 0.08	e : 0.06	" : 0.06	= : 0.05	g : 0.03	! : 0.03	f : 0.03	[ : 0.03	i : 0.01	a : 0.01	$ : 0.01	# : 0.01	
c : 0.20	[ : 0.20	" : 0.10	d : 0.10	b : 0.06	e : 0.06	! : 0.06	g : 0.03	f : 0.03	= : 0.03	i : 0.01	a : 0.01	$ : 0.01	v : 0.01	# : 0.01	
d : 0.27	[ : 0.20	" : 0.10	c : 0.08	! : 0.08	e : 0.05	a : 0.03	= : 0.03	# : 0.03	f : 0.01	g : 0.01	$ : 0.01	b : 0.01	v : 0.01	r : 0.01	
c : 0.37	d : 0.25	[ : 0.06	e : 0.05	b : 0.05	" : 0.03	! : 0.03	# : 0.03	a : 0.01	f : 0.01	g : 0.01	= : 0.01	v : 0.01	r : 0.01	
c : 0.40	d : 0.23	b : 0.13	[ : 0.05	e : 0.03	# : 0.03	f : 0.01	g : 0.01	= : 0.01	o : 0.01	v : 0.01	r : 0.01	
c : 0.38	d : 0.22	b : 0.10	a : 0.06	n : 0.05	e : 0.03	# : 0.03	g : 0.01	= : 0.01	q : 0.01	o : 0.01	v : 0.01	r : 0.01	
m : 0.44	o : 0.20	l : 0.08	n : 0.06	c : 0.05	d : 0.03	e : 0.03	q : 0.01	b : 0.01	v : 0.01	= : 0.01	r : 0.01	
m : 0.47	o : 0.22	l : 0.11	n : 0.08	e : 0.01	q : 0.01	b : 0.01	v : 0.01	= : 0.01	r : 0.01	
m : 0.47	o : 0.23	l : 0.13	n : 0.08	q : 0.01	v : 0.01	= : 0.01	r : 0.01	
m : 0.47	o : 0.23	n : 0.08	l : 0.05	c : 0.05	g : 0.01	q : 0.01	v : 0.01	= : 0.01	d : 0.01	r : 0.01	
c : 0.23	o : 0.22	d : 0.16	b : 0.10	a : 0.06	n : 0.03	m : 0.03	= : 0.03	l : 0.01	f : 0.01	g : 0.01	q : 0.01	v : 0.01	r : 0.01	
c : 0.25	o : 0.22	d : 0.18	b : 0.10	] : 0.06	e : 0.05	= : 0.03	n : 0.01	f : 0.01	g : 0.01	q : 0.01	v : 0.01	
c : 0.37	d : 0.28	] : 0.06	e : 0.06	o : 0.03	= : 0.03	b : 0.03	f : 0.01	3 : 0.01	g : 0.01	4 : 0.01	q : 0.01	v : 0.01	
c : 0.30	d : 0.27	b : 0.08	e : 0.06	3 : 0.06	4 : 0.03	= : 0.03	] : 0.03	f : 0.01	g : 0.01	o : 0.01	v : 0.01	a : 0.01	2 : 0.01	
c : 0.33	b : 0.11	d : 0.11	3 : 0.10	] : 0.08	e : 0.06	4 : 0.05	f : 0.03	= : 0.03	2 : 0.03	g : 0.01	
c : 0.22	b : 0.13	d : 0.11	] : 0.10	3 : 0.10	4 : 0.08	e : 0.08	2 : 0.05	f : 0.03	= : 0.03	g : 0.01	a : 0.01	
] : 0.16	b : 0.15	c : 0.13	3 : 0.13	2 : 0.11	4 : 0.08	= : 0.05	e : 0.05	d : 0.03	g : 0.01	a : 0.01	i : 0.01	f : 0.01	
c : 0.18	4 : 0.11	b : 0.10	a : 0.10	3 : 0.10	2 : 0.10	] : 0.06	= : 0.05	e : 0.05	d : 0.05	g : 0.03	i : 0.01	f : 0.01	
c : 0.23	] : 0.13	3 : 0.13	4 : 0.11	d : 0.08	g : 0.06	= : 0.06	e : 0.06	i : 0.03	b : 0.01	f : 0.01	2 : 0.01	
c : 0.32	= : 0.10	e : 0.10	4 : 0.08	g : 0.08	d : 0.08	3 : 0.06	i : 0.03	a : 0.03	b : 0.03	] : 0.03	f : 0.01	
c : 0.25	3 : 0.10	] : 0.10	g : 0.08	= : 0.08	e : 0.08	d : 0.08	4 : 0.06	i : 0.05	b : 0.03	> : 0.01	f : 0.01	2 : 0.01	
c : 0.22	g : 0.11	d : 0.11	= : 0.10	e : 0.10	2 : 0.08	i : 0.06	] : 0.05	3 : 0.05	4 : 0.03	> : 0.01	h : 0.01	f : 0.01	
2 : 0.15	g : 0.13	c : 0.13	= : 0.10	e : 0.10	d : 0.08	i : 0.06	] : 0.05	3 : 0.03	4 : 0.03	h : 0.03	f : 0.03	> : 0.01	[ : 0.01	
c : 0.15	g : 0.13	= : 0.10	2 : 0.10	e : 0.08	i : 0.06	f : 0.06	] : 0.06	d : 0.06	h : 0.06	a : 0.03	4 : 0.03	> : 0.01	
c : 0.15	g : 0.13	= : 0.11	] : 0.10	i : 0.08	d : 0.08	f : 0.06	h : 0.06	2 : 0.05	e : 0.05	4 : 0.03	b : 0.01	> : 0.01	3 : 0.01	
c : 0.15	= : 0.11	g : 0.11	i : 0.08	] : 0.08	d : 0.06	2 : 0.06	f : 0.06	h : 0.06	e : 0.06	b : 0.05	4 : 0.01	> : 0.01	3 : 0.01	
c : 0.13	d : 0.11	= : 0.10	g : 0.10	i : 0.08	] : 0.08	e : 0.06	h : 0.06	b : 0.05	f : 0.05	2 : 0.05	3 : 0.03	a : 0.01	> : 0.01	[ : 0.01	
d : 0.13	= : 0.10	e : 0.10	g : 0.10	c : 0.08	i : 0.06	f : 0.06	2 : 0.06	h : 0.06	a : 0.05	] : 0.05	b : 0.03	: : 0.01	> : 0.01	4 : 0.01	3 : 0.01	

#score	746.2169418172032
#seq	59
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_UTR_m2_run2.txt

#BEAR
Cccceeeeemmmmeeeee]cccd	chr1:2325730-2325966(+)$1	236	37	60	8.3868
ehhhhhhhhmmmmhhhhhhhh44	chr2:55237169-55237424(-)$1	255	19	42	10.5341
#hhhhhhhhmmmmhhhhhhhh44	chr8:144678734-144679005(-)$1	271	213	236	10.6833
:ccceeeeemmmmeeeee]cccF	chr1:2325766-2326036(+)$1	270	1	24	8.4800
gg[a!!ccclllccc22a]gggg	chr22:50013564-50013841(-)$1	277	157	180	9.0697
:hhhhhhhhmmmmhhhhhhhhee	chr6:109702652-109702980(-)$1	328	83	106	9.8170
iiiiiiiiimmmmiiiiiiiiic	chr19:50168058-50168449(-)$1	391	31	54	11.5243
ggg[eeeeennnnneeeeegggg	chr22:50013828-50014094(-)$1	266	131	154	8.3718
!hhhhhhhhmmmmhhhhhhhhcc	chr17:75212404-75212672(+)$1	268	124	147	10.9963
ggg[eeeeennnnneeeeegggg	chr22:50013894-50014168(-)$1	274	205	228	8.3718
gg!!eeeeemmmmeeeee22ggg	chr19:41770845-41771099(+)$1	254	75	98	9.9216
fffff[cccmmmmccc]ffffff	chr22:50050325-50050606(-)$1	281	61	84	8.1050
==="""cccmmmmccc=======	chr4:763941-764198(-)$1	257	175	198	10.4772
iiiiiiiiiooooooiiiiiiii	chr6:33168761-33169071(+)$1	310	247	270	10.0978
gggggg[ccclllccc333gggg	chr22:19429491-19429764(-)$1	273	220	243	9.1144
hhh"""cccmmmmccc]hhhhhh	chr6:34664394-34664666(-)$1	272	183	206	10.3380
iiiiiiiiiooooooiiiiiiii	chr12:123463994-123464266(+)$1	272	231	254	10.0978

#otherMatches

#Seq PSSM
CUGCCUGGAUCACUUCAGCGCAU	chr1:2325730-2325966(+)$1	236	37	60	8.3868
CCUGCUGCAGUUGUGCAGCAGAG	chr2:55237169-55237424(-)$1	255	19	42	10.5341
UCCCUGCCCGACAGGGCGGGGUG	chr8:144678734-144679005(-)$1	271	213	236	10.6833
CUGCCUGGAUCACUUCAGCGCAU	chr1:2325766-2326036(+)$1	270	1	24	8.4800
gaggcuggcgaugccuucguccu	chr22:50013564-50013841(-)$1	277	157	180	9.0697
GUCUCAGACUUGAGUCUGAGAAG	chr6:109702652-109702980(-)$1	328	83	106	9.8170
GAAAGUGGGGAUACUUACUUUCG	chr19:50168058-50168449(-)$1	391	31	54	11.5243
gguacauggauuugcuGUGACCU	chr22:50013828-50014094(-)$1	266	131	154	8.3718
uagUAGCGCGUCUGUGCUGCUUC	chr17:75212404-75212672(+)$1	268	124	147	10.9963
gguacauggauuugcuGUGACCU	chr22:50013894-50014168(-)$1	274	205	228	8.3718
UGGGUUUCGGAGGUGAGGGACGG	chr19:41770845-41771099(+)$1	254	75	98	9.9216
AGGGACGAUUCUGAUUUUCCCUG	chr22:50050325-50050606(-)$1	281	61	84	8.1050
UAUGUAGCAUGCAUGUGUGUGUG	chr4:763941-764198(-)$1	257	175	198	10.4772
CUCUGGUCAGCGUGAUGGCCAGA	chr6:33168761-33169071(+)$1	310	247	270	10.0978
cccaggaguucgagaccagccug	chr22:19429491-19429764(-)$1	273	220	243	9.1144
CGCGAAGCUAGCUAGCAGCGGCC	chr6:34664394-34664666(-)$1	272	183	206	10.3380
CUGGCUCCUGGAUGAGGGGGCCA	chr12:123463994-123464266(+)$1	272	231	254	10.0978

#DB
(((((((((....))))).)))(	chr1:2325730-2325966(+)$1	1	37	60	8.3868
(((((((((....))))))))..	chr2:55237169-55237424(-)$1	1	19	42	10.5341
.((((((((....))))))))..	chr8:144678734-144679005(-)$1	1	213	236	10.6833
.((((((((....))))).)))(	chr1:2325766-2326036(+)$1	1	1	24	8.4800
((.(..(((...)))..).))))	chr22:50013564-50013841(-)$1	1	157	180	9.0697
.((((((((....))))))))((	chr6:109702652-109702980(-)$1	1	83	106	9.8170
(((((((((....)))))))))(	chr19:50168058-50168449(-)$1	1	31	54	11.5243
(((.(((((.....)))))))))	chr22:50013828-50014094(-)$1	1	131	154	8.3718
.((((((((....))))))))))	chr17:75212404-75212672(+)$1	1	124	147	10.9963
(((.(((((.....)))))))))	chr22:50013894-50014168(-)$1	1	205	228	8.3718
((..(((((....)))))..)))	chr19:41770845-41771099(+)$1	1	75	98	9.9216
(((((.(((....))).))))))	chr22:50050325-50050606(-)$1	1	61	84	8.1050
(((...(((....))))))))))	chr4:763941-764198(-)$1	1	175	198	10.4772
(((((((((......))))))))	chr6:33168761-33169071(+)$1	1	247	270	10.0978
((((((.(((...)))...))))	chr22:19429491-19429764(-)$1	1	220	243	9.1144
(((...(((....))).))))))	chr6:34664394-34664666(-)$1	1	183	206	10.3380
(((((((((......))))))))	chr12:123463994-123464266(+)$1	1	231	254	10.0978

#PSSM
g : 0.29	i : 0.17	: : 0.11	C : 0.05	e : 0.05	# : 0.05	! : 0.05	f : 0.05	= : 0.05	h : 0.05	
h : 0.29	g : 0.29	i : 0.17	c : 0.11	f : 0.05	= : 0.05	
h : 0.29	i : 0.17	g : 0.17	c : 0.11	[ : 0.05	! : 0.05	f : 0.05	= : 0.05	
h : 0.23	i : 0.17	c : 0.11	[ : 0.11	" : 0.11	a : 0.05	! : 0.05	f : 0.05	g : 0.05	
e : 0.29	h : 0.23	i : 0.17	" : 0.11	! : 0.05	f : 0.05	g : 0.05	
e : 0.29	h : 0.23	i : 0.17	" : 0.11	! : 0.05	[ : 0.05	g : 0.05	
e : 0.29	h : 0.23	c : 0.23	i : 0.17	[ : 0.05	
e : 0.29	c : 0.29	h : 0.23	i : 0.17	
e : 0.29	c : 0.29	h : 0.23	i : 0.17	
m : 0.64	n : 0.11	o : 0.11	l : 0.05	c : 0.05	
m : 0.64	l : 0.11	n : 0.11	o : 0.11	
m : 0.64	l : 0.11	n : 0.11	o : 0.11	
m : 0.64	n : 0.11	o : 0.11	c : 0.05	l : 0.05	
c : 0.29	h : 0.23	e : 0.17	n : 0.11	o : 0.11	i : 0.05	
e : 0.29	c : 0.29	h : 0.23	o : 0.11	i : 0.05	
e : 0.29	h : 0.23	c : 0.23	i : 0.17	2 : 0.05	
e : 0.29	h : 0.23	i : 0.17	] : 0.11	2 : 0.05	= : 0.05	3 : 0.05	
e : 0.29	h : 0.29	i : 0.17	a : 0.05	f : 0.05	= : 0.05	3 : 0.05	
h : 0.29	] : 0.17	i : 0.17	e : 0.11	2 : 0.05	f : 0.05	= : 0.05	3 : 0.05	
h : 0.29	g : 0.23	i : 0.17	c : 0.11	2 : 0.05	f : 0.05	= : 0.05	
h : 0.29	g : 0.29	i : 0.17	c : 0.11	f : 0.05	= : 0.05	
g : 0.29	c : 0.17	i : 0.17	4 : 0.11	e : 0.05	f : 0.05	= : 0.05	h : 0.05	
g : 0.29	4 : 0.11	c : 0.11	i : 0.11	d : 0.05	F : 0.05	e : 0.05	f : 0.05	= : 0.05	h : 0.05	

#score	164.38765256254703
#seq	17
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_CDS_m1_run2.txt

#BEAR
b!!dddd!!ddddoooooodddd]dddd22bb	chr3:171830174-171830438(+)$1	264	162	194	12.7987
::ccc[dddd[bboooooobb333dddd]ccc	chr2:136529981-136530217(+)$1	236	120	152	12.5747
iiiiiii"""cccooooooccc22iiiiiiii	chr18:6239619-6239885(-)$1	266	180	212	18.2198
iiii[bb!!acccooooooccc]a22bb]iii	chr17:27074783-27075069(+)$1	286	23	55	15.6410
&&ggggggg[cccoooooocccggggggg444	chr17:79213056-79213304(+)$1	248	98	130	14.3137
:eeeee[bb[cccooooooccc]bbeeeeegg	chr17:27421648-27421875(-)$1	227	45	77	13.0850
:ffffffa!!cccooooooccc22a]ffffff	chr17:27004703-27004933(+)$1	230	75	107	14.0939
eebb[dddd[cccoooooocccdddd]bbccc	chr11:20099452-20099709(+)$1	257	93	125	13.0457
[dddd!!bb[cccooooooccc333bb22ddd	chr14:24033669-24033874(-)$1	205	18	50	14.7745
!ggggggg"""bboooooobb]ggggggg]cc	chr17:16021190-16021441(-)$1	251	99	131	15.7442
"==========[bbnnnnnbb==========2	chr9:124522086-124522342(+)$1	256	17	49	12.6181
gggggg"""cccrrrrrrrrrccc4444gggg	chr3:49713389-49713637(+)$1	248	169	201	11.5838
eeeea!!bb[cccooooooccc]bb22a]eee	chr5:150075005-150075322(-)$1	317	26	58	14.0391
ceeeee"""ddddoooooodddd4444eeeee	chr12:56744781-56745030(-)$1	249	35	67	14.1822
[ffffff####bboooooobb333ffffffbb	chr4:146025434-146025748(+)$1	314	226	258	14.6540
ggggg####ddddoooooodddd]gggggggf	chr20:44523367-44523640(+)$1	273	36	68	15.0195
cggggggga[bboooooobb]a333ggggggg	chr11:57569241-57569478(+)$1	237	129	161	14.5965
ca"""dddd[a[aooooooa]adddd333a]c	chr1:183102541-183102782(+)$1	241	79	111	13.8296
#bb[ggggggg[aooooooa]ggggggg]bb4	chr22:38355328-38355585(+)$1	257	7	39	13.6608
dd[eeeee!!cccooooooccc]eeeee]ddd	chr13:113714907-113715168(+)$1	261	108	140	14.5312
"=========="""bblllbb333========	chr19:45409821-45410024(+)$1	203	106	138	12.8675
ddd!!ccc"""ccclllccc333ccc333ddd	chr7:94292949-94293167(+)$1	218	151	183	12.2358
iiiii$$$$$cccnnnnnccc4444iiiiiii	chr19:42790862-42791156(+)$1	294	17	49	14.0583
============rrrrrrrrr===========	chr10:27454268-27454541(+)$1	273	6	38	12.4481
hhhhhhh"""cccooooooccchhhhhhhh33	chr11:71725473-71725716(-)$1	243	186	218	14.1427
ccc[a####ddddoooooodddd333a]ccc]	chr4:108565873-108566113(-)$1	240	115	147	15.5173
c[eeeee"""cccooooooccc333eeeee]c	chr12:30877203-30877469(-)$1	266	24	56	16.8204
bb[==========oooooo==========bb2	chr2:85778873-85779132(-)$1	259	209	241	15.4219
b[ccc####ddddoooooodddd333ccc]bb	chr19:12885282-12885592(-)$1	310	114	146	14.7099
ddddiiiiiiiiiooooooiiiiiiiii]ddd	chr11:830551-830809(+)$1	258	223	255	14.3426
hhhh[bb"""cccoooooocccbb]hhhhhhh	chr1:226339934-226340224(-)$1	290	101	133	14.0313
dhhhhhhhh!!bboooooobb333hhhhhhhh	chr11:118888567-118888770(-)$1	203	128	160	13.4254
cc[ccc[a[ddddooooooddddaccc]ccc:	chr19:13873119-13873351(+)$1	232	82	114	13.3508
bb[ccc####ddddllldddd333ccc]bb]c	chr10:32573522-32573921(-)$1	399	223	255	11.6579
hhh[==========nnnnn==========22h	chr1:41578980-41579207(-)$1	227	125	157	12.2311
$$$ddddbb[cccooooooccc]bb]dddd]e	chr17:19861278-19861583(-)$1	305	78	110	12.8611
eee[eeeee[cccnnnnnccc333eeeee333	chr1:8424711-8424953(-)$1	242	100	132	12.4237
=====ccc[a[bboooooobb]a]ccc]====	chr2:62991302-62991536(+)$1	234	88	120	15.9842
bb"""ccc"""bboooooobb333ccc]bb]f	chr12:133202598-133202858(-)$1	260	120	152	15.8633
!cccbb####cccnnnnnccc333bb]ccc]c	chr17:74093845-74094102(-)$1	257	37	69	13.3713
cc!!dddd"""bbnnnnnbb333dddd]ccc3	chr14:32031247-32031524(+)$1	277	100	132	11.9218
iiiiiii"""cccnnnnnccc333iiiiiiii	chr1:43213300-43213527(-)$1	227	23	55	15.7790
ddd!!ccc[a!!aooooooa22a]ccc]dddd	chr20:36470685-36470908(+)$1	223	2	34	14.2117
:ffffff!!ddddoooooodddd4444fffff	chr4:466219-466543(-)$1	324	120	152	12.5813
iiiiiii[eeeeeooooooeeeee333iiiii	chr12:100904462-100904720(+)$1	258	72	104	14.1103
e[dddd####cccnnnnnccc333dddd]eee	chr14:39583445-39583759(+)$1	314	108	140	13.1492
gg!!eeeee[cccooooooccceeeeeggggg	chr12:80328515-80328871(-)$1	356	210	242	14.5883
=======!!ddddoooooodddd333======	chr1:41474231-41474483(+)$1	252	186	218	16.6564
!ggggggg[ddddoooooodddd]ggggggg2	chr20:62293177-62293397(+)$1	220	169	201	14.6069
fff[dddd!!cccoooooocccdddd]fffff	chr20:13107147-13107420(+)$1	273	189	221	13.9901
cc[==========oooooo==========]cc	chr6:52129324-52129599(-)$1	275	19	51	16.4497
eebb!!ccc[cccooooooccc333ccc22bb	chr11:120337800-120338040(+)$1	240	133	165	15.4226
iiiiiiii####aooooooa333iiiiiiiii	chr22:36685031-36685247(-)$1	216	37	69	17.5158
eeeeccc[a[cccnnnnnccc]a22ccc]eee	chr20:60711828-60712082(-)$1	254	25	57	12.3470
ccc"""ccc!!cccnnnnnccc22ccc22ccc	chr17:5308381-5308648(-)$1	267	205	237	12.4600
eee[ccc####bboooooobb4444ccc]eee	chr9:134349891-134350168(+)$1	277	113	145	16.2023
a$$$$$gggggggooooooggggggg4444a]	chr19:40741068-40741310(-)$1	242	134	166	12.7609
===========cccmmmmccc333========	chr7:29437888-29438202(+)$1	314	81	113	13.6570
eeee[dddd!!bboooooobb4444dddd333	chr20:2635961-2636177(+)$1	216	153	185	14.4701

#otherMatches

#Seq PSSM
UAGCCAUGAUGCCCCACUUGGUGAAUGGAGAU	chr3:171830174-171830438(+)$1	264	162	194	12.7987
AUGCAAGAGAAAGAAGGUACUAUAUUUCAUGC	chr2:136529981-136530217(+)$1	236	120	152	12.5747
AUGUGUGUUUUAUUUUUGUGUAUUCAUAUGUU	chr18:6239619-6239885(-)$1	266	180	212	18.2198
CUGGGCACUGCAGUCAGCUCUGACCCUGGCCA	chr17:27074783-27075069(+)$1	286	23	55	15.6410
UAGCCGCUCAUGUCGGCUAACGGAGCGGUGUG	chr17:79213056-79213304(+)$1	248	98	130	14.3137
UGUGUCUCUAGAGGCAGAGCUCCAGGACAUUU	chr17:27421648-27421875(-)$1	227	45	77	13.0850
AAGAAGCUGACUGGAUCUACAGGAAUGCUUUU	chr17:27004703-27004933(+)$1	230	75	107	14.0939
AACUGAAUGAGUUAAGAAAAACCAUUGAGCUG	chr11:20099452-20099709(+)$1	257	93	125	13.0457
CGGACACCAGCCGAAAUGCCGGAAAUGCGGUC	chr14:24033669-24033874(-)$1	205	18	50	14.7745
GGUCUAGUAGAACAUGGUCGUAACUGGGCAGC	chr17:16021190-16021441(-)$1	251	99	131	15.7442
UGGUUGGGGGUUGCACGUGGCACCCCCAGCUG	chr9:124522086-124522342(+)$1	256	17	49	12.6181
CAAGGCCGAGUCCUUCUUUCAGACCAAAGCCU	chr3:49713389-49713637(+)$1	248	169	201	11.5838
UAUGCCUUGUUUUUUUCUUGAAUCAUAGACAU	chr5:150075005-150075322(-)$1	317	26	58	14.0391
UCCACACCUCUCUCUCCUCAGAGCCUUUGUGG	chr12:56744781-56745030(-)$1	249	35	67	14.1822
CGAAUGGGUAAGCUGUUCUGUGGAUCAUUUAA	chr4:146025434-146025748(+)$1	314	226	258	14.6540
GAGCCAACCCCAGCCCCAUCUGGAGGCUCCAC	chr20:44523367-44523640(+)$1	273	36	68	15.0195
CUUGGAUUCCGCUUGGAUGCUGUCAAGUCCAA	chr11:57569241-57569478(+)$1	237	129	161	14.5965
ACAAAGCUGUGGAGAUCUAUGCCAGCGUGGCU	chr1:183102541-183102782(+)$1	241	79	111	13.8296
UUUGUCUUGGUGUCCAGGAAGGCCAGGAGAAU	chr22:38355328-38355585(+)$1	257	7	39	13.6608
UGAAGGUGCCGGUAAGUGCGCCCCGCCUCCAU	chr13:113714907-113715168(+)$1	261	108	140	14.5312
UGGGGGCGGGGCUUGCUCGGUUCCCCCCGCUC	chr19:45409821-45410024(+)$1	203	106	138	12.8675
GCCCAGAAGACCUCCCAGAGAAGUUCGAUGGC	chr7:94292949-94293167(+)$1	218	151	183	12.2358
CCAGGCUCUCCUGCUGCACAGCUCACCUGGCU	chr19:42790862-42791156(+)$1	294	17	49	14.0583
GGGGAAGGUAAACCUGUUGUUUUUAUUUUUCU	chr10:27454268-27454541(+)$1	273	6	38	12.4481
GCGCGGCUGACCCAGGAGCGGGGCCGUGCCCA	chr11:71725473-71725716(-)$1	243	186	218	14.1427
CCAUCUUCCCAUCUCCCAUGAUGUAUGCUGGA	chr4:108565873-108566113(-)$1	240	115	147	15.5173
GUAAUAGCUUUUAAAUGAGUAAUCUCUGUUUC	chr12:30877203-30877469(-)$1	266	24	56	16.8204
AGUGAGGAGAGGCUUUUCUGUCUUUCCUUCUG	chr2:85778873-85779132(-)$1	259	209	241	15.4219
CAAGUGGACUCCUGAUUAGAGGACAGACUGGU	chr19:12885282-12885592(-)$1	310	114	146	14.7099
GCGUCCCCGGGUUGUCGGGAGCCUGGGGCACG	chr11:830551-830809(+)$1	258	223	255	14.3426
GGGGUGUAUUUUGAAUGGACAGACUCUCCAAA	chr1:226339934-226340224(-)$1	290	101	133	14.0313
GACUAGGGGUAACUCUCUCGUAAUCCUCUAGU	chr11:118888567-118888770(-)$1	203	128	160	13.4254
GGAAGAUGACCGCAAGCUGGCGGCUCUGCUGA	chr19:13873119-13873351(+)$1	232	82	114	13.3508
ACAGCACAACCUGGGACCCAGACAUGCAGUAC	chr10:32573522-32573921(-)$1	399	223	255	11.6579
GGUGCUUGUCACUUUUGAUGGGUGGCGAGGGG	chr1:41578980-41579207(-)$1	227	125	157	12.2311
GAAUCACUUGCUGCUUUCCCAGGAAUGUGACA	chr17:19861278-19861583(-)$1	305	78	110	12.8611
GUGAGCAGGAGCUGAAGGGGUACGCCUGCCGC	chr1:8424711-8424953(-)$1	242	100	132	12.4237
AUUCUGGUAGGCACAUAGCUGGCAACCUGGAA	chr2:62991302-62991536(+)$1	234	88	120	15.9842
GACCUGGACCUGUGUAAAGACUCUUCCUUCUC	chr12:133202598-133202858(-)$1	260	120	152	15.8633
AGUCCGAAUUUCGCAGCCUGAUGACGCGGCAC	chr17:74093845-74094102(-)$1	257	37	69	13.3713
ACCGAUAGAAGGUGUUAAACAAGUUAUAGUUG	chr14:32031247-32031524(+)$1	277	100	132	11.9218
GAAGGGCCAUGAUGAGAUGUCUCUGCCUUUCC	chr1:43213300-43213527(-)$1	227	23	55	15.7790
UUGCUGUGCGUUGUCUUUCCUUCUCACUCAAG	chr20:36470685-36470908(+)$1	223	2	34	14.2117
CCCAGCAGAAUUUGUAUAGAGAUGUGAUGUUG	chr4:466219-466543(-)$1	324	120	152	12.5813
UUUGUUGUCACUUUUGUUCAGGUGUUUUAACA	chr12:100904462-100904720(+)$1	258	72	104	14.1103
ACCAGCGGAGUCCGCAGUGGAAGAGUUGAUGC	chr14:39583445-39583759(+)$1	314	108	140	13.1492
GAUCGGCUCCGAGACGGACCUCGAGCCUCCGG	chr12:80328515-80328871(-)$1	356	210	242	14.5883
AGAUAGUGAGCUGAGAGACCAGCAGAAUUAUU	chr1:41474231-41474483(+)$1	252	186	218	16.6564
UGGCAUGGUGCUGAGUCCACAGCCCCAUGCUG	chr20:62293177-62293397(+)$1	220	169	201	14.6069
AUCAUGGGACUGGAUGGGACCACUCAAGGUAA	chr20:13107147-13107420(+)$1	273	189	221	13.9901
AAGGCAUUCAAGGUGGCCCUCUUGGAUGUGUU	chr6:52129324-52129599(-)$1	275	19	51	16.4497
UUCAACUGAAGGAUAUUAUUCCCACUCAAAUG	chr11:120337800-120338040(+)$1	240	133	165	15.4226
CGGAGCUGGAGCGGCUCAACAAGCAGUUCCGC	chr22:36685031-36685247(-)$1	216	37	69	17.5158
GGUUCCUUGGCACCUUGUGUGGCUUAGGUAAC	chr20:60711828-60712082(-)$1	254	25	57	12.3470
CGCUACUGAAUCAGGAAUGCUGUAUCACUGUG	chr17:5308381-5308648(-)$1	267	205	237	12.4600
UGUUUCCACCCCAAGAAAAUGUUCAGGAUGCA	chr9:134349891-134350168(+)$1	277	113	145	16.2023
GAAGAAGGUGAGCCCCACUGCUUGCCCCAGCA	chr19:40741068-40741310(-)$1	242	134	166	12.7609
GAUGGUCUUGUACCUUCAGGUUUCAUGGGAUC	chr7:29437888-29438202(+)$1	314	81	113	13.6570
GGCCAAGGCUAAGGCUAUUCUGGAUGCCUCAC	chr20:2635961-2636177(+)$1	216	153	185	14.4701

#DB
(..((((..((((......)))).))))..))	chr3:171830174-171830438(+)$1	1	162	194	12.7987
..(((.((((.((......))...)))).)))	chr2:136529981-136530217(+)$1	1	120	152	12.5747
(((((((...(((......)))..))))))))	chr18:6239619-6239885(-)$1	1	180	212	18.2198
((((.((..((((......))).)..)).)))	chr17:27074783-27075069(+)$1	1	23	55	15.6410
..(((((((.(((......))))))))))...	chr17:79213056-79213304(+)$1	1	98	130	14.3137
.(((((.((.(((......))).)))))))((	chr17:27421648-27421875(-)$1	1	45	77	13.0850
.(((((((..(((......)))..).))))))	chr17:27004703-27004933(+)$1	1	75	107	14.0939
))((.((((.(((......))))))).))(((	chr11:20099452-20099709(+)$1	1	93	125	13.0457
.((((..((.(((......)))...))..)))	chr14:24033669-24033874(-)$1	1	18	50	14.7745
.(((((((...((......)).))))))).))	chr17:16021190-16021441(-)$1	1	99	131	15.7442
.((((((((((.((.....)))))))))))).	chr9:124522086-124522342(+)$1	1	17	49	12.6181
((((((...(((.........)))....))))	chr3:49713389-49713637(+)$1	1	169	201	11.5838
(((((..((.(((......))).))..).)))	chr5:150075005-150075322(-)$1	1	26	58	14.0391
((((((...((((......))))....)))))	chr12:56744781-56745030(-)$1	1	35	67	14.1822
.((((((....((......))...))))))))	chr4:146025434-146025748(+)$1	1	226	258	14.6540
(((((....((((......)))).))))))))	chr20:44523367-44523640(+)$1	1	36	68	15.0195
(((((((((.((......)).)...)))))))	chr11:57569241-57569478(+)$1	1	129	161	14.5965
((...((((.(.(......).)))))...).)	chr1:183102541-183102782(+)$1	1	79	111	13.8296
.((.(((((((.(......).))))))).)).	chr22:38355328-38355585(+)$1	1	7	39	13.6608
((.(((((..(((......))).))))).)))	chr13:113714907-113715168(+)$1	1	108	140	14.5312
.((((((((((...((...))...))))))))	chr19:45409821-45410024(+)$1	1	106	138	12.8675
(((..(((...(((...)))...)))...)))	chr7:94292949-94293167(+)$1	1	151	183	12.2358
(((((.....(((.....)))....)))))))	chr19:42790862-42791156(+)$1	1	17	49	14.0583
((((((((((((.........)))))))))))	chr10:27454268-27454541(+)$1	1	6	38	12.4481
(((((((...(((......)))))))))))..	chr11:71725473-71725716(-)$1	1	186	218	14.1427
(((.(....((((......))))...).))).	chr4:108565873-108566113(-)$1	1	115	147	15.5173
(.(((((...(((......)))...))))).)	chr12:30877203-30877469(-)$1	1	24	56	16.8204
((.((((((((((......)))))))))))).	chr2:85778873-85779132(-)$1	1	209	241	15.4219
(.(((....((((......))))...))).))	chr19:12885282-12885592(-)$1	1	114	146	14.7099
(((((((((((((......))))))))).)))	chr11:830551-830809(+)$1	1	223	255	14.3426
((((.((...(((......))))).)))))))	chr1:226339934-226340224(-)$1	1	101	133	14.0313
)((((((((..((......))...))))))))	chr11:118888567-118888770(-)$1	1	128	160	13.4254
((.(((.(.((((......)))))))).))).	chr19:13873119-13873351(+)$1	1	82	114	13.3508
((.(((....((((...))))...))).)).)	chr10:32573522-32573921(-)$1	1	223	255	11.6579
(((.((((((((((.....))))))))))..)	chr1:41578980-41579207(-)$1	1	125	157	12.2311
...((((((.(((......))).)).)))).)	chr17:19861278-19861583(-)$1	1	78	110	12.8611
(((.(((((.(((.....)))...)))))...	chr1:8424711-8424953(-)$1	1	100	132	12.4237
((((((((.(.((......)).).))).))))	chr2:62991302-62991536(+)$1	1	88	120	15.9842
((...(((...((......))...))).)).)	chr12:133202598-133202858(-)$1	1	120	152	15.8633
.(((((....(((.....)))...)).))).)	chr17:74093845-74094102(-)$1	1	37	69	13.3713
((..((((...((.....))...)))).))).	chr14:32031247-32031524(+)$1	1	100	132	11.9218
(((((((...(((.....)))...))))))))	chr1:43213300-43213527(-)$1	1	23	55	15.7790
(((..(((.(..(......)..).))).))))	chr20:36470685-36470908(+)$1	1	2	34	14.2117
.((((((..((((......))))....)))))	chr4:466219-466543(-)$1	1	120	152	12.5813
(((((((.(((((......)))))...)))))	chr12:100904462-100904720(+)$1	1	72	104	14.1103
(.((((....(((.....)))...)))).)))	chr14:39583445-39583759(+)$1	1	108	140	13.1492
((..(((((.(((......)))))))))))))	chr12:80328515-80328871(-)$1	1	210	242	14.5883
(((((((..((((......))))...))))))	chr1:41474231-41474483(+)$1	1	186	218	16.6564
.(((((((.((((......)))).))))))).	chr20:62293177-62293397(+)$1	1	169	201	14.6069
(((.((((..(((......))))))).)))))	chr20:13107147-13107420(+)$1	1	189	221	13.9901
((.((((((((((......)))))))))).))	chr6:52129324-52129599(-)$1	1	19	51	16.4497
((((..(((.(((......)))...)))..))	chr11:120337800-120338040(+)$1	1	133	165	15.4226
((((((((....(......)...)))))))))	chr22:36685031-36685247(-)$1	1	37	69	17.5158
(((((((.(.(((.....))).)..))).)))	chr20:60711828-60712082(-)$1	1	25	57	12.3470
(((...(((..(((.....)))..)))..)))	chr17:5308381-5308648(-)$1	1	205	237	12.4600
(((.(((....((......))....))).)))	chr9:134349891-134350168(+)$1	1	113	145	16.2023
(.....(((((((......)))))))....).	chr19:40741068-40741310(-)$1	1	134	166	12.7609
((((((((((((((....)))...))))))))	chr7:29437888-29438202(+)$1	1	81	113	13.6570
((((.((((..((......))....))))...	chr20:2635961-2636177(+)$1	1	153	185	14.4701

#PSSM
c : 0.15	e : 0.13	i : 0.10	b : 0.08	d : 0.08	: : 0.06	= : 0.06	! : 0.05	g : 0.05	h : 0.05	[ : 0.03	" : 0.03	& : 0.01	# : 0.01	$ : 0.01	f : 0.01	a : 0.01	
e : 0.15	i : 0.10	g : 0.10	= : 0.10	c : 0.10	d : 0.08	f : 0.06	b : 0.06	h : 0.06	[ : 0.05	$ : 0.03	! : 0.01	: : 0.01	& : 0.01	a : 0.01	
e : 0.13	i : 0.10	g : 0.10	= : 0.10	c : 0.08	d : 0.08	[ : 0.08	f : 0.06	h : 0.06	! : 0.05	b : 0.05	" : 0.03	$ : 0.03	
= : 0.13	e : 0.11	i : 0.10	g : 0.10	[ : 0.10	d : 0.08	c : 0.08	! : 0.06	f : 0.05	" : 0.05	h : 0.05	b : 0.03	$ : 0.01	
= : 0.15	g : 0.11	d : 0.10	c : 0.10	i : 0.10	e : 0.10	[ : 0.06	f : 0.05	" : 0.05	! : 0.05	a : 0.03	h : 0.03	b : 0.01	$ : 0.01	
d : 0.13	= : 0.13	c : 0.13	g : 0.10	e : 0.10	i : 0.08	b : 0.05	f : 0.05	! : 0.05	# : 0.05	$ : 0.03	h : 0.03	[ : 0.01	" : 0.01	
d : 0.13	= : 0.13	c : 0.13	g : 0.10	# : 0.10	i : 0.08	e : 0.06	f : 0.05	b : 0.03	[ : 0.03	! : 0.03	" : 0.03	h : 0.03	$ : 0.01	
# : 0.13	" : 0.11	= : 0.11	d : 0.10	g : 0.10	c : 0.10	! : 0.06	b : 0.06	e : 0.05	a : 0.03	i : 0.03	[ : 0.03	$ : 0.01	h : 0.01	
" : 0.18	# : 0.15	! : 0.11	= : 0.11	d : 0.06	b : 0.06	[ : 0.06	g : 0.05	e : 0.05	a : 0.03	c : 0.03	$ : 0.01	i : 0.01	h : 0.01	
[ : 0.20	d : 0.16	" : 0.15	= : 0.11	! : 0.10	# : 0.10	a : 0.05	g : 0.03	c : 0.01	$ : 0.01	i : 0.01	e : 0.01	
c : 0.38	d : 0.16	= : 0.11	" : 0.06	! : 0.06	# : 0.05	[ : 0.03	g : 0.03	b : 0.01	a : 0.01	i : 0.01	e : 0.01	
c : 0.44	d : 0.16	b : 0.16	= : 0.06	[ : 0.05	" : 0.01	i : 0.01	! : 0.01	e : 0.01	# : 0.01	g : 0.01	
c : 0.42	d : 0.16	b : 0.16	a : 0.06	= : 0.05	r : 0.03	o : 0.01	" : 0.01	i : 0.01	e : 0.01	g : 0.01	
o : 0.72	n : 0.11	c : 0.05	r : 0.03	b : 0.01	" : 0.01	d : 0.01	= : 0.01	
o : 0.72	n : 0.16	r : 0.03	l : 0.03	b : 0.01	m : 0.01	
o : 0.72	n : 0.16	r : 0.03	l : 0.03	b : 0.01	m : 0.01	
o : 0.72	n : 0.16	l : 0.05	r : 0.03	m : 0.01	
o : 0.72	n : 0.16	r : 0.03	l : 0.01	c : 0.01	d : 0.01	m : 0.01	
o : 0.71	c : 0.13	n : 0.05	r : 0.03	b : 0.03	l : 0.01	d : 0.01	
c : 0.42	b : 0.20	d : 0.16	a : 0.06	= : 0.05	r : 0.03	i : 0.01	e : 0.01	g : 0.01	
c : 0.40	d : 0.16	b : 0.16	] : 0.05	3 : 0.05	= : 0.05	r : 0.03	i : 0.01	2 : 0.01	e : 0.01	g : 0.01	
c : 0.30	3 : 0.23	d : 0.15	= : 0.08	] : 0.05	4 : 0.05	a : 0.03	g : 0.03	i : 0.01	2 : 0.01	e : 0.01	
3 : 0.30	d : 0.20	] : 0.08	= : 0.08	g : 0.06	2 : 0.05	4 : 0.05	a : 0.05	e : 0.03	c : 0.01	h : 0.01	i : 0.01	b : 0.01	
3 : 0.30	] : 0.08	= : 0.08	4 : 0.08	2 : 0.06	g : 0.06	b : 0.06	d : 0.06	e : 0.05	a : 0.03	c : 0.03	i : 0.03	h : 0.01	
3 : 0.13	d : 0.11	= : 0.11	c : 0.11	g : 0.10	4 : 0.10	i : 0.06	b : 0.06	e : 0.05	2 : 0.03	h : 0.03	a : 0.01	f : 0.01	] : 0.01	
c : 0.16	d : 0.13	g : 0.11	= : 0.11	i : 0.08	e : 0.08	3 : 0.06	4 : 0.05	h : 0.05	2 : 0.03	] : 0.03	b : 0.03	f : 0.01	
c : 0.16	= : 0.13	d : 0.10	g : 0.10	i : 0.08	e : 0.08	4 : 0.06	] : 0.05	3 : 0.05	h : 0.05	b : 0.03	f : 0.03	2 : 0.01	a : 0.01	
= : 0.13	g : 0.11	] : 0.11	i : 0.10	d : 0.08	e : 0.08	c : 0.08	f : 0.06	h : 0.05	b : 0.03	2 : 0.03	4 : 0.03	3 : 0.03	a : 0.01	
] : 0.15	= : 0.15	g : 0.11	i : 0.08	c : 0.08	2 : 0.06	e : 0.06	f : 0.06	b : 0.05	h : 0.05	d : 0.05	3 : 0.03	4 : 0.01	
c : 0.11	e : 0.11	i : 0.10	d : 0.10	= : 0.10	g : 0.08	f : 0.06	b : 0.06	2 : 0.05	] : 0.05	h : 0.05	4 : 0.03	3 : 0.03	a : 0.01	
c : 0.13	b : 0.10	i : 0.10	g : 0.10	= : 0.10	] : 0.10	d : 0.08	e : 0.08	f : 0.05	3 : 0.05	h : 0.03	4 : 0.01	2 : 0.01	a : 0.01	
c : 0.15	i : 0.10	e : 0.10	f : 0.08	d : 0.08	= : 0.08	b : 0.06	g : 0.06	3 : 0.06	2 : 0.05	h : 0.05	4 : 0.03	] : 0.03	: : 0.01	

#score	833.6536302660028
#seq	59
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_CDS_m2_run1.txt

#BEAR
hhhhhhhvvvvvvvvvvvvvhhhhh	chr14:21966378-21966615(-)$1	237	24	49	20.4801
ddddddduuuuuuuuuuuuddddBB	chr9:117069955-117070158(+)$1	203	71	96	21.7941
eeeeevvvvvvvvvvvvveeeee44	chr9:117062282-117062499(+)$1	217	185	210	23.0972
[eeeeevvvvvvvvvvvvveeeeed	chr7:99751437-99751736(+)$1	299	41	66	23.4245
hhhhhhhvvvvvvvvvvvvvhhhhh	chr14:23531523-23531740(-)$1	217	142	167	20.4801
gggggggvvvvvvvvvvvvvggggg	chr17:39981623-39981916(-)$1	293	199	224	22.6061
gggggggtttttttttttggggggg	chr16:89263660-89263916(-)$1	256	153	178	23.1948
[eeeeeuuuuuuuuuuuueeeee]d	chr17:62496674-62496914(-)$1	240	137	162	23.6593
gggddddvvvvvvvvvvvvvddddc	chr10:99222240-99222513(-)$1	273	49	74	22.9525
ggggggguuuuuuuuuuuugggggg	chr21:47656647-47656983(-)$1	336	218	243	23.0129
ddddddduuuuuuuuuuuuddddBB	chr9:117069902-117070130(+)$1	228	124	149	21.7941
ffffffuuuuuuuuuuuuffffff:	chr11:71193794-71194142(+)$1	348	31	56	20.7227
iiiiiiiwwwwwwwwwwwwwwiiii	chr7:44612071-44612302(-)$1	231	75	100	20.6940
ddyyyyyyyyyyyyyyyydddd444	chr14:74752973-74753235(-)$1	262	26	51	19.1943
bb[ddddtttttttttttdddd]bb	chr16:31202193-31202421(+)$1	228	125	150	23.0391
ddddddduuuuuuuuuuuuddddBB	chr9:117069930-117070155(+)$1	225	96	121	21.7941
ifffffftttttttttttffffff:	chr20:57274160-57274402(+)$1	242	123	148	21.4102
c"""cccuuuuuuuuuuuuccc333	chr16:66839576-66839846(-)$1	270	142	167	23.2994
:fffffftttttttttttffffffd	chr9:117071523-117071751(+)$1	228	147	172	21.0154
c[eeeeeyyyyyyyyyyyyyyyyee	chr1:234529337-234529620(-)$1	283	8	33	19.4849
gggggggtttttttttttggggggg	chr16:2580807-2581062(+)$1	255	195	220	23.1948
bb!!cccuuuuuuuuuuuuccc22b	chr17:46058819-46059063(+)$1	244	14	39	22.6796
gggggggtttttttttttggggggg	chr16:2580908-2581169(+)$1	261	94	119	23.1948
gggggggtttttttttttggggggg	chr3:48451280-48451522(-)$1	242	189	214	23.1948
ddddccctttttttttttccc]ddd	chr21:46924949-46925153(+)$1	204	16	41	22.8232
cc[ddddtttttttttttddddccc	chr20:2816075-2816329(-)$1	254	160	185	23.6914
:eeeeeuuuuuuuuuuuueeeee::	chr20:34292301-34292565(-)$1	264	108	133	21.2336
[ffffffwwwwwwwwwwwwwwffff	chr20:410932-411190(+)$1	258	152	177	19.6590
###ddddtttttttttttdddd333	chr20:60887130-60887385(-)$1	255	80	105	24.0070
!!eeeeettttttttttteeeee33	chr16:31200914-31201133(+)$1	219	15	40	24.6934
gggddddtttttttttttdddd22g	chr16:30016431-30016703(+)$1	272	5	30	23.9086
"eeeeeuuuuuuuuuuuueeeee44	chr20:62571479-62571726(-)$1	247	185	210	23.6207
::eeeeettttttttttteeeeedd	chr14:23528516-23528782(-)$1	266	99	124	21.9297
!!dddduuuuuuuuuuuudddd22d	chr6:109766299-109766574(-)$1	275	60	85	23.2098
cccyyyyyyyyyyyyyyyyccc22c	chr9:117054326-117054570(+)$1	244	32	57	19.9386
eee[ccctttttttttttccceeee	chr17:26904629-26904895(-)$1	266	170	195	23.4147
iiii[bbtttttttttttbbiiiii	chr20:43565190-43565466(+)$1	276	196	221	22.2496
eeeeevvvvvvvvvvvvveeeee22	chr2:61413664-61413875(+)$1	211	63	88	22.9996
iieeeeettttttttttteeeee::	chr20:62321663-62321895(+)$1	232	72	97	22.7868
eeeeevvvvvvvvvvvvveeeee22	chrX:18913155-18913359(-)$1	204	30	55	22.9996
d!!ddddtttttttttttdddd22d	chr3:50103770-50104036(+)$1	266	188	213	23.8103
hccccccuuuuuuuuuuuuccc]cc	chr2:190339965-190340297(+)$1	332	256	281	22.8392
!ddddwwwwwwwwwwwwwwdddd]e	chr1:156497645-156497874(-)$1	229	182	207	21.5968
c!!ddddvvvvvvvvvvvvvdddd5	chr6:32083435-32083716(-)$1	281	43	68	22.3706
FFeeeeettttttttttteeeeeff	chr19:36113677-36113921(+)$1	244	12	37	22.8868
eeeewwwwwwwwwwwwwweeeee>>	chr2:219303309-219303542(+)$1	233	49	74	20.9870
bb[dddduuuuuuuuuuuudddd]b	chr12:69128972-69129225(+)$1	253	89	114	23.1641
eeee[bbtttttttttttbbeeeee	chr16:2138501-2138748(+)$1	247	155	180	22.5086
b[ddddvvvvvvvvvvvvvdddd]b	chr8:145654541-145654820(-)$1	279	73	98	23.1648
e!!ddddvvvvvvvvvvvvvdddde	chr19:10794492-10794737(+)$1	245	11	36	22.8375
c[eeeeettttttttttteeeee]c	chr9:35684383-35684626(-)$1	243	17	42	24.3895
eeeeevvvvvvvvvvvvveeeee::	chr3:132277718-132277980(-)$1	262	29	54	21.5850

#otherMatches

#Seq PSSM
UUGGUAUGCAUUUUUUAACAAUAUU	chr14:21966378-21966615(-)$1	237	24	49	20.4801
AGACGUGUCUCAAGCCCAUCACGGC	chr9:117069955-117070158(+)$1	203	71	96	21.7941
uucauucaacaaauauuuauggagc	chr9:117062282-117062499(+)$1	217	185	210	23.0972
CUCUCCUCCAGUGGUCUUUGGAGAA	chr7:99751437-99751736(+)$1	299	41	66	23.4245
GUCAUGGCAUAUAUUUCCUUUUGUG	chr14:23531523-23531740(-)$1	217	142	167	20.4801
UCUGCUCCCCCGUGAACACAGAGCA	chr17:39981623-39981916(-)$1	293	199	224	22.6061
GGGCUGUGUCCGCACUCAGCAGCCU	chr16:89263660-89263916(-)$1	256	153	178	23.1948
UCUUUACACCUAAUAACAUAAAGCA	chr17:62496674-62496914(-)$1	240	137	162	23.6593
GUGUGCAUGUGUGUGUGUUUUGCAG	chr10:99222240-99222513(-)$1	273	49	74	22.9525
CAUCUGUAACUACUAGCCCACAGGU	chr21:47656647-47656983(-)$1	336	218	243	23.0129
AGACGUGUCUCAAGCCCAUCACGGC	chr9:117069902-117070130(+)$1	228	124	149	21.7941
GGGGUGGAACUAUGUAAACAUCCCA	chr11:71193794-71194142(+)$1	348	31	56	20.7227
AAGCUGACCUUCUUUUUUCCUUUGG	chr7:44612071-44612302(-)$1	231	75	100	20.6940
CUGUGGAGGAGGAAGAUGGGAGCUG	chr14:74752973-74753235(-)$1	262	26	51	19.1943
GGAGGCUAUGAUCGAGGCGGCUACC	chr16:31202193-31202421(+)$1	228	125	150	23.0391
AGACGUGUCUCAAGCCCAUCACGGC	chr9:117069930-117070155(+)$1	225	96	121	21.7941
UCAUCCCAACCAUCAUCCGGGAUGA	chr20:57274160-57274402(+)$1	242	123	148	21.4102
CAUACCAUUGCUGCAUUCUUGGGGG	chr16:66839576-66839846(-)$1	270	142	167	23.2994
GCAGGCCGUACGCUUCCGGGCCUGG	chr9:117071523-117071751(+)$1	228	147	172	21.0154
UGUGGGAUUGUUUUCUUUUUCCUUC	chr1:234529337-234529620(-)$1	283	8	33	19.4849
CUCAGCCGAUGUGUUAGAGGUUGAG	chr16:2580807-2581062(+)$1	255	195	220	23.1948
GGCGCCCUGUGAACCUGAUGGGAAC	chr17:46058819-46059063(+)$1	244	14	39	22.6796
CUCAGCCGAUGUGUUAGAGGUUGAG	chr16:2580908-2581169(+)$1	261	94	119	23.1948
CCCGCCUGCUGUCCAUGAAGGUGGG	chr3:48451280-48451522(-)$1	242	189	214	23.1948
GGCAGCUGCAGCCCCACAAGCUUGC	chr21:46924949-46925153(+)$1	204	16	41	22.8232
UGAUCCACACAUACAAACUGGACAG	chr20:2816075-2816329(-)$1	254	160	185	23.6914
CCUGUUUCCUGAUUCUAUGACAGCA	chr20:34292301-34292565(-)$1	264	108	133	21.2336
GUGGGGCCACAUGCUGACCCAGCCC	chr20:410932-411190(+)$1	258	152	177	19.6590
UCACUGGCAACGUCUACUCCGGCUU	chr20:60887130-60887385(-)$1	255	80	105	24.0070
GGAAAGGGAGUACUGUAGCCUUUAA	chr16:31200914-31201133(+)$1	219	15	40	24.6934
GGCCUCUUCCCCCUCCCCAGAGCUG	chr16:30016431-30016703(+)$1	272	5	30	23.9086
AGCGGGUCAAUGACCUUUUCCGCAU	chr20:62571479-62571726(-)$1	247	185	210	23.6207
AUCGUUCAGAAAGAGGCAGAGCGGG	chr14:23528516-23528782(-)$1	266	99	124	21.9297
AUUCUGUCUUGUACCCCUCAGACCA	chr6:109766299-109766574(-)$1	275	60	85	23.2098
UAAUUUUUUGUGUGUUUCUUUAAGG	chr9:117054326-117054570(+)$1	244	32	57	19.9386
CUGAGCUAAGAAACUGAAAGCCAGA	chr17:26904629-26904895(-)$1	266	170	195	23.4147
UCCUACUGUGGAGCAAGAAGAGGAG	chr20:43565190-43565466(+)$1	276	196	221	22.2496
UAAGGUUCCUAUUUUUUUUCUUAGA	chr2:61413664-61413875(+)$1	211	63	88	22.9996
CACCAGGAAAGCUAAGAGUCUGGAC	chr20:62321663-62321895(+)$1	232	72	97	22.7868
GCGCUCUAUUCUGCCUCCAGUGCCA	chrX:18913155-18913359(-)$1	204	30	55	22.9996
CUUUCAAACUGUUGACUCUUggccg	chr3:50103770-50104036(+)$1	266	188	213	23.8103
UAUUUCUGUUCUAAAAAUAAGAUAA	chr2:190339965-190340297(+)$1	332	256	281	22.8392
UGGCCUGAAGAGAGCAGCUGGCCUC	chr1:156497645-156497874(-)$1	229	182	207	21.5968
CCAGGGUGAUUCACAUCAAGACCUC	chr6:32083435-32083716(-)$1	281	43	68	22.3706
GGGCCUGAUGAGAAGGAGCAGGCCA	chr19:36113677-36113921(+)$1	244	12	37	22.8868
CUGUUAUUUACUUUAUGUGCAGAAC	chr2:219303309-219303542(+)$1	233	49	74	20.9870
AAGGAGAAAAUGUAUAACGUCUUGU	chr12:69128972-69129225(+)$1	253	89	114	23.1641
UCAGUGAAAUAAAUAAAGUCCUGAC	chr16:2138501-2138748(+)$1	247	155	180	22.5086
CUGAGGUCUGCCCUCUUCCCCUCCG	chr8:145654541-145654820(-)$1	279	73	98	23.1648
CGUGCAUGCUCUGGGAACAAAUGUG	chr19:10794492-10794737(+)$1	245	11	36	22.8375
CAAUGGAGAAAUGAAGGAUCUGUGG	chr9:35684383-35684626(-)$1	243	17	42	24.3895
CCUGAUUCUUUUGCUUUUUCAGGUA	chr3:132277718-132277980(-)$1	262	29	54	21.5850

#DB
(((((((.............)))))	chr14:21966378-21966615(-)$1	1	24	49	20.4801
)))((((............))))))	chr9:117069955-117070158(+)$1	1	71	96	21.7941
(((((.............)))))..	chr9:117062282-117062499(+)$1	1	185	210	23.0972
.(((((.............))))))	chr7:99751437-99751736(+)$1	1	41	66	23.4245
(((((((.............)))))	chr14:23531523-23531740(-)$1	1	142	167	20.4801
(((((((.............)))))	chr17:39981623-39981916(-)$1	1	199	224	22.6061
(((((((...........)))))))	chr16:89263660-89263916(-)$1	1	153	178	23.1948
.(((((............))))).)	chr17:62496674-62496914(-)$1	1	137	162	23.6593
)))((((.............))))(	chr10:99222240-99222513(-)$1	1	49	74	22.9525
(((((((............))))))	chr21:47656647-47656983(-)$1	1	218	243	23.0129
)))((((............))))))	chr9:117069902-117070130(+)$1	1	124	149	21.7941
((((((............)))))).	chr11:71193794-71194142(+)$1	1	31	56	20.7227
(((((((..............))))	chr7:44612071-44612302(-)$1	1	75	100	20.6940
((................))))...	chr14:74752973-74753235(-)$1	1	26	51	19.1943
((.((((...........)))).))	chr16:31202193-31202421(+)$1	1	125	150	23.0391
)))((((............))))))	chr9:117069930-117070155(+)$1	1	96	121	21.7941
)((((((...........)))))).	chr20:57274160-57274402(+)$1	1	123	148	21.4102
(...(((............)))...	chr16:66839576-66839846(-)$1	1	142	167	23.2994
.((((((...........))))))(	chr9:117071523-117071751(+)$1	1	147	172	21.0154
(.(((((................))	chr1:234529337-234529620(-)$1	1	8	33	19.4849
(((((((...........)))))))	chr16:2580807-2581062(+)$1	1	195	220	23.1948
((..(((............)))..)	chr17:46058819-46059063(+)$1	1	14	39	22.6796
(((((((...........)))))))	chr16:2580908-2581169(+)$1	1	94	119	23.1948
(((((((...........)))))))	chr3:48451280-48451522(-)$1	1	189	214	23.1948
(((((((...........))).)))	chr21:46924949-46925153(+)$1	1	16	41	22.8232
((.((((...........)))))))	chr20:2816075-2816329(-)$1	1	160	185	23.6914
.(((((............)))))..	chr20:34292301-34292565(-)$1	1	108	133	21.2336
.((((((..............))))	chr20:410932-411190(+)$1	1	152	177	19.6590
...((((...........))))...	chr20:60887130-60887385(-)$1	1	80	105	24.0070
..(((((...........)))))..	chr16:31200914-31201133(+)$1	1	15	40	24.6934
(((((((...........))))..)	chr16:30016431-30016703(+)$1	1	5	30	23.9086
.(((((............)))))..	chr20:62571479-62571726(-)$1	1	185	210	23.6207
..(((((...........)))))((	chr14:23528516-23528782(-)$1	1	99	124	21.9297
..((((............))))..)	chr6:109766299-109766574(-)$1	1	60	85	23.2098
(((................)))..)	chr9:117054326-117054570(+)$1	1	32	57	19.9386
(((.(((...........)))))))	chr17:26904629-26904895(-)$1	1	170	195	23.4147
((((.((...........)))))))	chr20:43565190-43565466(+)$1	1	196	221	22.2496
(((((.............)))))..	chr2:61413664-61413875(+)$1	1	63	88	22.9996
))(((((...........)))))..	chr20:62321663-62321895(+)$1	1	72	97	22.7868
(((((.............)))))..	chrX:18913155-18913359(-)$1	1	30	55	22.9996
(..((((...........))))..)	chr3:50103770-50104036(+)$1	1	188	213	23.8103
(((((((............))).))	chr2:190339965-190340297(+)$1	1	256	281	22.8392
.((((..............)))).)	chr1:156497645-156497874(-)$1	1	182	207	21.5968
(..((((.............)))).	chr6:32083435-32083716(-)$1	1	43	68	22.3706
(((((((...........)))))((	chr19:36113677-36113921(+)$1	1	12	37	22.8868
((((..............)))))..	chr2:219303309-219303542(+)$1	1	49	74	20.9870
((.((((............)))).)	chr12:69128972-69129225(+)$1	1	89	114	23.1641
((((.((...........)))))))	chr16:2138501-2138748(+)$1	1	155	180	22.5086
(.((((.............)))).)	chr8:145654541-145654820(-)$1	1	73	98	23.1648
(..((((.............)))))	chr19:10794492-10794737(+)$1	1	11	36	22.8375
(.(((((...........))))).)	chr9:35684383-35684626(-)$1	1	17	42	24.3895
(((((.............)))))..	chr3:132277718-132277980(-)$1	1	29	54	21.5850

#PSSM
e : 0.15	g : 0.15	d : 0.11	c : 0.11	i : 0.07	b : 0.07	h : 0.05	[ : 0.05	: : 0.05	! : 0.05	f : 0.01	# : 0.01	" : 0.01	F : 0.01	
e : 0.21	g : 0.15	d : 0.11	! : 0.09	f : 0.07	i : 0.05	b : 0.05	[ : 0.05	c : 0.05	h : 0.03	" : 0.01	# : 0.01	: : 0.01	F : 0.01	
e : 0.32	g : 0.15	d : 0.13	f : 0.07	! : 0.07	[ : 0.05	h : 0.03	i : 0.03	c : 0.03	y : 0.01	" : 0.01	# : 0.01	
d : 0.30	e : 0.30	g : 0.11	f : 0.07	h : 0.03	i : 0.03	y : 0.03	" : 0.01	! : 0.01	[ : 0.01	c : 0.01	
d : 0.28	e : 0.26	g : 0.11	c : 0.09	f : 0.07	h : 0.03	y : 0.03	[ : 0.03	i : 0.01	w : 0.01	
d : 0.26	e : 0.19	g : 0.11	c : 0.09	v : 0.07	f : 0.07	h : 0.03	y : 0.03	b : 0.03	w : 0.03	i : 0.01	
d : 0.23	v : 0.11	g : 0.11	e : 0.11	u : 0.09	c : 0.09	f : 0.05	h : 0.03	y : 0.03	b : 0.03	w : 0.03	i : 0.01	
t : 0.38	u : 0.24	v : 0.23	w : 0.07	y : 0.05	
t : 0.38	u : 0.24	v : 0.23	w : 0.07	y : 0.05	
t : 0.38	u : 0.24	v : 0.23	w : 0.07	y : 0.05	
t : 0.38	u : 0.24	v : 0.23	w : 0.07	y : 0.05	
t : 0.38	u : 0.24	v : 0.23	w : 0.07	y : 0.05	
t : 0.38	u : 0.24	v : 0.23	w : 0.07	y : 0.05	
t : 0.38	u : 0.24	v : 0.23	w : 0.07	y : 0.05	
t : 0.38	u : 0.24	v : 0.23	w : 0.07	y : 0.05	
t : 0.38	u : 0.24	v : 0.23	w : 0.07	y : 0.05	
t : 0.38	u : 0.24	v : 0.23	w : 0.07	y : 0.05	
t : 0.38	u : 0.24	v : 0.23	w : 0.07	y : 0.05	
e : 0.24	v : 0.15	u : 0.15	d : 0.13	g : 0.07	f : 0.05	w : 0.05	y : 0.03	c : 0.03	b : 0.03	
e : 0.26	d : 0.24	v : 0.11	c : 0.11	g : 0.09	f : 0.05	w : 0.03	b : 0.03	y : 0.01	
d : 0.30	e : 0.28	g : 0.11	c : 0.11	f : 0.05	h : 0.03	w : 0.03	y : 0.01	i : 0.01	
d : 0.30	e : 0.30	g : 0.11	f : 0.07	c : 0.07	h : 0.03	i : 0.03	y : 0.01	] : 0.01	
e : 0.30	d : 0.19	g : 0.11	2 : 0.09	f : 0.07	h : 0.03	i : 0.03	] : 0.03	3 : 0.03	4 : 0.01	y : 0.01	c : 0.01	
2 : 0.13	g : 0.11	] : 0.09	d : 0.09	f : 0.09	e : 0.07	B : 0.05	4 : 0.05	3 : 0.05	: : 0.05	h : 0.03	i : 0.03	c : 0.03	b : 0.01	> : 0.01	
d : 0.13	g : 0.13	c : 0.09	: : 0.09	e : 0.09	b : 0.07	B : 0.05	4 : 0.05	3 : 0.05	h : 0.03	i : 0.03	f : 0.03	2 : 0.03	5 : 0.01	> : 0.01	

#score	1164.7212749247813
#seq	52
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_UTR_m1_run1.txt

#BEAR
ccdddd####ccc!!ddddllldddd]cccdddd:eeeee	chr2:159498908-159499315(+)$1	407	322	362	11.2800
####ccc"""ccc[cccooooooccc]ccc333ccc22ee	chr2:62991326-62991597(+)$1	271	142	182	19.0350
[ddddaccc[ccc[cccmmmmcccccc]ccc]a]dddd]b	chr13:77900694-77900959(-)$1	265	193	233	11.6604
ccc[bb[aiiiiiiiiinnnnniiiiiiiii4444a]bb]	chr8:11702487-11702737(-)$1	250	136	176	11.9269
###dddd!!cccccc!!ccclllccc22ccc]ccc333dd	chr3:133472346-133472576(+)$1	230	149	189	13.8935
$$$dddd"""ccc[ddddooooooddddccc55555dddd	chr2:216226698-216226902(-)$1	204	115	155	12.9839
!!eeeee[a"""eeeeeooooooeeeee55555a]eeeee	chr7:75615593-75615847(+)$1	254	193	233	11.4752
"""dddd"""cccooooooccc4444dddd333bb]eeee	chr2:216300482-216300695(-)$1	213	151	191	14.1503
$$dddd!!a[dddd[eeeeellleeeee4444dddda22d	chr14:95081238-95081516(+)$1	278	111	151	11.1385
hh[dddd!!dddd[cccnnnnnccc]dddd22dddd]hhh	chr9:117027600-117027849(+)$1	249	50	90	11.8976
========="""cccqqqqqqqqccc==========gggg	chr2:159519402-159519695(+)$1	293	121	161	11.6987
e!!bb$$$$$ccc!!bbnnnnnbb22cccbb22eeeeegg	chr12:76449711-76450007(-)$1	296	110	150	11.0339
###ffffff"""ccclllccc333ffffff333ggggggg	chr2:216229501-216229735(-)$1	234	73	113	10.2380
b[ccc[a"""ccc[a!!bboooooobb22a]ccc333a]c	chr11:122929576-122929785(-)$1	209	145	185	13.1853
ddd[ccc"""ccc[eeeeeooooooeeeee4444ccc444	chr14:95080995-95081287(+)$1	292	176	216	14.0342
dddd[dddd[a!!bbbboooooobb22bb22a]ddddddd	chr2:20251247-20251512(-)$1	265	69	109	10.0952
$$$dddd"""ccc[ddddooooooddddccc55555dddd	chr2:216226666-216226898(-)$1	232	111	151	12.9839
b[eeeee"""cccrrrrrrrrrccc333eeeee]bb]a]g	chr3:133473234-133473515(+)$1	281	10	50	11.3476
:::dddd"""ccc[cccqqqqqqqqccc4444ccc333dd	chr9:116997791-116998033(+)$1	242	137	177	10.8944
$$$ccc[ccc"""ddddooooooddddccc333ccc5555	chr13:99037807-99038170(+)$1	363	169	209	11.6665
####ccc[===========oooooo===========22cc	chr2:242598426-242598703(+)$1	277	130	170	14.9809
ggg==========eeeeennnnneeeee4444========	chr20:34302006-34302234(-)$1	228	105	145	12.9662
ccc[iiiiiiiii[bboooooobb]iiiiiiiiiccc22b	chr8:27467899-27468192(-)$1	293	220	260	12.4507
ccc[bbcccccc[a[bbmmmmbb22a]ccc333ccc]bb3	chr7:45928143-45928376(+)$1	233	79	119	10.2175
i"""bb####ccc[bbnnnnnbbcccbb333iiiiiiiii	chr2:62934030-62934313(+)$1	283	156	196	13.4022
ee[dddd[dddd####annnnna4444dddd]ddddeeee	chr20:34302034-34302265(-)$1	231	189	229	10.9705
========!!ccc[ddddmmmmddddccc===========	chr17:48827772-48828232(+)$1	460	413	453	13.5651
eeee[ccc[dddd[bboooooobbdddd]ccc]eeeee]a	chr3:133474112-133474368(+)$1	256	132	172	11.1557
ddffffff####eeeeeooooooeeeeeffffff]ddddd	chr3:49050512-49050767(+)$1	255	9	49	10.8622
ccc[dddd"""cccrrrrrrrrrcccdddd]ccceeeeed	chr2:85768108-85768384(+)$1	276	120	160	12.0209
[bb!!ccc####ccc[bbnnnnnbb22ccc333ccc22bb	chr1:2160044-2160297(+)$1	253	143	183	12.8326
""ccc[ggggggg[cccnnnnncccggggggg22ccc]dd	chr17:76968340-76968610(-)$1	270	108	148	12.3231
=======####bb[eeeeemmmmeeeeebb22========	chr4:74280734-74280983(+)$1	249	161	201	12.2771
$$$dddd"""ccc[ddddooooooddddccc55555dddd	chr2:216226623-216226866(-)$1	243	79	119	12.9839
ggg[dddd"""bb[cccmmmmcccbb4444dddd333ggg	chr1:990331-990589(+)$1	258	152	192	12.1248
dd[ccc####ccc[bbmmmmbb]ccc4444cccdddd]dd	chr3:50112604-50112863(+)$1	259	29	69	11.2693
"""a[ccc"""bb[cccnnnnncccbbccca]eeeeefff	chr16:22308641-22308954(+)$1	313	53	93	13.5125
!!iiiiiiiiigggggggmmmmggggggg]iiiiiiiiie	chr12:9261818-9262036(-)$1	218	127	167	11.1688
iiidddd"""gggggggssssssssssggggggg333ddd	chr3:120394539-120394800(-)$1	261	51	91	10.4746
####ccc[eeeeeacccooooooccc]a333eeeee]ccc	chr11:130005415-130005675(+)$1	260	160	200	14.6807
c[bb####eeeee[cccooooooccceeeee4444bb]cc	chr9:117015063-117015310(+)$1	247	102	142	13.1906
"""dddd"""cccooooooccc4444dddd333bb]eeee	chr2:216300495-216300709(-)$1	214	165	205	14.1503
:============[ccclllccc333============hh	chr11:75111356-75111611(+)$1	255	36	76	12.6515
ii[bb[a"""eeeee[aooooooa]eeeeea]bb22iiii	chr22:42229146-42229420(+)$1	274	29	69	13.7115
[bb[bb####bb[ccccccmmmmccc]ccc22bb4444bb	chr1:43996598-43996862(+)$1	264	135	175	11.5300
[a[dddd[a[a[ddddmmmmddddaa]dddd]a]bb22ff	chr19:13054630-13054881(+)$1	251	86	126	10.2032
cccc[bb[a[ccc[ddddmmmmdddd22ccc]a]bb]ccc	chr17:62500006-62500334(-)$1	328	233	273	11.1625
###dddd"""eeeeemmmmeeeee22dddd333ccc]eee	chr17:27420240-27420518(-)$1	278	233	273	11.7541
bb[eeeee!!dddd!!aooooooa22ddddeeeee4444b	chr19:579433-579714(+)$1	281	120	160	12.4694
"""iiiiiiiiiddddbbnnnnnbb]dddd4444iiiiii	chr17:48818916-48819139(+)$1	223	153	193	12.9565
b"""eeeee!!eeeeeooooooeeeee4444eeeee22bb	chr10:21823270-21823549(+)$1	279	184	224	12.4250
$$gggggggeeeeecccooooooccc4444eeeee]gggg	chr16:30081337-30081550(+)$1	213	43	83	12.9505

#otherMatches

#Seq PSSM
UCGUCCUAGAGGAAAUGUUGAAAACAGUCUGGACUGUGCC	chr2:159498908-159499315(+)$1	407	322	362	11.2800
CAUUGAAAUCACUGUAACACUUUUUAAGGUAAGUUCCAUU	chr2:62991326-62991597(+)$1	271	142	182	19.0350
GCGGGGCUGGGGCUGGGGCUACCCGCCGCGGACUCCCGGG	chr13:77900694-77900959(-)$1	265	193	233	11.6604
GCGAGAUCGGGGUAGAAAUGCAUUUUAUUCUUUAAGUUCA	chr8:11702487-11702737(-)$1	250	136	176	11.9269
GCUCCCAAUAACCUGAAGCCUGUGGUGGCAGAGUUCUAUG	chr3:133472346-133472576(+)$1	230	149	189	13.8935
AACUGCCGCAGACCUGGGGGUGAACCCAGUCCCGAAGGCA	chr2:216226698-216226902(-)$1	204	115	155	12.9839
CGUGUGGAGCUAGGGGCCUGCCUGCCCCACCCACCCCACA	chr7:75615593-75615847(+)$1	254	193	233	11.4752
UCUCCCCCACCGUCUCAACAUGCUUAGGGGUCCGGGGCCC	chr2:216300482-216300695(-)$1	213	151	191	14.1503
AAAUCACAGAUCUGAUCAAGGACCUUGACUCGCAGACAAU	chr14:95081238-95081516(+)$1	278	111	151	11.1385
GGCAGAGAAGGCCAUGGAGGGCCUAAGGUCACCUUUACCU	chr9:117027600-117027849(+)$1	249	50	90	11.8976
CUCCCAGCAAAGACUCUGAGCCAAGUUGCUGGGGGAAGAA	chr2:159519402-159519695(+)$1	293	121	161	11.6987
UGAAGAAAAAGAAGACCCCAAAGGAAUUCCUGAAUUUUGG	chr12:76449711-76450007(-)$1	296	110	150	11.0339
ACAGUGGCAGAAGGAAUAUCUCGGUGCCAUUUGCUCCUGC	chr2:216229501-216229735(-)$1	234	73	113	10.2380
uuccuuccuuggauguuugagcgaCCAUUCUUCCUUAGCA	chr11:122929576-122929785(-)$1	209	145	185	13.1853
GAGCUGCAGCUGAGUAUGGGAAAUGCCAUGUUUGUCAAAG	chr14:95080995-95081287(+)$1	292	176	216	14.0342
GCUCAGUGCGCAGGCGCGAAGAAGCUGGCAGGGGCACGAG	chr2:20251247-20251512(-)$1	265	69	109	10.0952
AACUGCCGCAGACCUGGGGGUGAACCCAGUCCCGAAGGCA	chr2:216226666-216226898(-)$1	232	111	151	12.9839
CUCCGCUCCCCUCCCUCCUCAAGAGUCCGGUGGUGAUGAG	chr3:133473234-133473515(+)$1	281	10	50	11.3476
CAAGGUAAUUGCAUGAGAUUUUCCCCUCCCCCUGCCCCUG	chr9:116997791-116998033(+)$1	242	137	177	10.8944
AGAUGUAUGGAAUCCGGUUGCACCCGGCCAAGGACAGGGA	chr13:99037807-99038170(+)$1	363	169	209	11.6665
GCGGUCCACAUUGCAAUGGACAACACUGUUGUGAUGGAGG	chr2:242598426-242598703(+)$1	277	130	170	14.9809
GUUAAUGGCAAGACUUGCAGAGGGUAAGUGUUUCUUGCUA	chr20:34302006-34302234(-)$1	228	105	145	12.9662
UGUUCCUCUGGCCACAGGGUGAUGAGGUCAGAGGGCAGGG	chr8:27467899-27468192(-)$1	293	220	260	12.4507
CGGCCCCUGUCUGCUGCUCGCGCCUGGAGAUGUCAGAGGU	chr7:45928143-45928376(+)$1	233	79	119	10.2175
AUGGACCCCAAGCAUCAUUUCGAGUUGUAGUUGAGUUUUU	chr2:62934030-62934313(+)$1	283	156	196	13.4022
ACUGUGGGUAUUGUAGUGGAAAAGAAAGGUAGCCAUGUAA	chr20:34302034-34302265(-)$1	231	189	229	10.9705
ACAGUGUAGUCCUGCAAAACAUUUUGAGGUACAUUGUUUU	chr17:48827772-48828232(+)$1	460	413	453	13.5651
GCGGAUGGGACGGACUUCCCCCAGCUGUGUCAACUGUGUC	chr3:133474112-133474368(+)$1	256	132	172	11.1557
CCCUCCAGACCAGGUCUGCUCAAGGACCCUGGGGUGGGAG	chr3:49050512-49050767(+)$1	255	9	49	10.8622
GAUGCUGUCCUUGAUGCCCACCUUCAGCAGGAUCCUGAUG	chr2:85768108-85768384(+)$1	276	120	160	12.0209
ggggagccggagcgCACCAUGGAGGCGGCGGCAGGCGGCC	chr1:2160044-2160297(+)$1	253	143	183	12.8326
AACUGCUGCUGCCCAGGAGCGACCUGGCGGUGCCCAGCGA	chr17:76968340-76968610(-)$1	270	108	148	12.3231
GUUGGAAAAAAAUGUAGUUCUUUGACUGAUGAUUCCAAUA	chr4:74280734-74280983(+)$1	249	161	201	12.2771
AACUGCCGCAGACCUGGGGGUGAACCCAGUCCCGAAGGCA	chr2:216226623-216226866(-)$1	243	79	119	12.9839
UCCAGGCAGCCGUGCUGCAGACAGACCUAGUGCCGAGGGA	chr1:990331-990589(+)$1	258	152	192	12.1248
UGAUCGUAAACUUGUUGAUAAAGAAGAUAUCGACACUAGC	chr3:50112604-50112863(+)$1	259	29	69	11.2693
UAAGAGGAAACGCUGGGGCCGGCCCGCUCCCCCCCACGUG	chr16:22308641-22308954(+)$1	313	53	93	13.5125
CAUUUUUUAAAAAUCUUUUGUGGGGGAUUAUUUAAAAGAG	chr12:9261818-9262036(-)$1	218	127	167	11.1688
UCCUGCUAAUGGUGGCAUUUGUGUCUUUGUCACCUACAGU	chr3:120394539-120394800(-)$1	261	51	91	10.4746
CUUCCACCCCUUCCCAGCCCUACCUGAGAACGAAGGUGUG	chr11:130005415-130005675(+)$1	260	160	200	14.6807
CUGGAAUGCCAGGUGGUAUGGGGACCCCUGGAGAGCCUGG	chr9:117015063-117015310(+)$1	247	102	142	13.1906
UCUCCCCCACCGUCUCAACAUGCUUAGGGGUCCGGGGCCC	chr2:216300495-216300709(-)$1	214	165	205	14.1503
UUAGAGCAGUUUCUUGUUUUGCAUGUGGAACUGUUUUAAA	chr11:75111356-75111611(+)$1	255	36	76	12.6515
CGGGCGGGGGUUGUCGGGUGUCAUGGGCGGUGGCGACGGC	chr22:42229146-42229420(+)$1	274	29	69	13.7115
AUGCGGACCGACGGCCCCUGGAUAGGCGGUGAGUGACCCC	chr1:43996598-43996862(+)$1	264	135	175	11.5300
ACGAGCUGUAGAGAGGCCUGCCUCCAGGGCUGGACUGAGG	chr19:13054630-13054881(+)$1	251	86	126	10.2032
UGUAAGUUUGGGAGAACUCUUGAGUUGAUCUGAUAUAUGC	chr17:62500006-62500334(-)$1	328	233	273	11.1625
GGAGUGGGGAUCCUAGGGAUGGGGAGCCACGAACAGAGCU	chr17:27420240-27420518(-)$1	278	233	273	11.7541
GCUCCUUGAAUGACAGCGCCACAGAGGUCACAGGGCACCG	chr19:579433-579714(+)$1	281	120	160	12.4694
AAAUUGAUGUACUUCUGCAACAGGUGAGAAUUGUGUGCAU	chr17:48818916-48819139(+)$1	223	153	193	12.9565
CGAGCGGUGGGCUgccgggccgggcggggggcgccggggc	chr10:21823270-21823549(+)$1	279	184	224	12.4250
CUGGGUGGAUGGGACUCGGAGAAGAGCCCUUCUCACUCCA	chr16:30081337-30081550(+)$1	213	43	83	12.9505

#DB
))((((....(((..((((...)))).))))))).(((((	chr2:159498908-159499315(+)$1	1	322	362	11.2800
....(((...(((.(((......))).)))...)))..))	chr2:62991326-62991597(+)$1	1	142	182	19.0350
.((((((((.(((.(((....)))))).))).).)))).)	chr13:77900694-77900959(-)$1	1	193	233	11.6604
(((.((.((((((((((.....)))))))))....).)).	chr8:11702487-11702737(-)$1	1	136	176	11.9269
...((((..((((((..(((...)))..))).)))...))	chr3:133472346-133472576(+)$1	1	149	189	13.8935
...((((...(((.((((......))))))).....))))	chr2:216226698-216226902(-)$1	1	115	155	12.9839
..(((((.(...(((((......))))).....).)))))	chr7:75615593-75615847(+)$1	1	193	233	11.4752
...((((...(((......)))....))))...)).))))	chr2:216300482-216300695(-)$1	1	151	191	14.1503
..((((..(.((((.(((((...)))))....)))))..)	chr14:95081238-95081516(+)$1	1	111	151	11.1385
((.((((..((((.(((.....))).))))..)))).)))	chr9:117027600-117027849(+)$1	1	50	90	11.8976
(((((((((...(((........)))))))))))))((((	chr2:159519402-159519695(+)$1	1	121	161	11.6987
(..((.....(((..((.....))..)))))..)))))((	chr12:76449711-76450007(-)$1	1	110	150	11.0339
...((((((...(((...)))...))))))...)))))))	chr2:216229501-216229735(-)$1	1	73	113	10.2380
(.(((.(...(((.(..((......))..).)))...).)	chr11:122929576-122929785(-)$1	1	145	185	13.1853
(((.(((...(((.(((((......)))))....)))...	chr14:95080995-95081287(+)$1	1	176	216	14.0342
((((.((((.(..((((......))..))..).)))))))	chr2:20251247-20251512(-)$1	1	69	109	10.0952
...((((...(((.((((......))))))).....))))	chr2:216226666-216226898(-)$1	1	111	151	12.9839
(.(((((...(((.........)))...))))).)).).)	chr3:133473234-133473515(+)$1	1	10	50	11.3476
...((((...(((.(((........)))....)))...))	chr9:116997791-116998033(+)$1	1	137	177	10.8944
...(((.(((...((((......)))))))...)))....	chr13:99037807-99038170(+)$1	1	169	209	11.6665
....(((.(((((((((((......)))))))))))..))	chr2:242598426-242598703(+)$1	1	130	170	14.9809
)))(((((((((((((((.....)))))....))))))))	chr20:34302006-34302234(-)$1	1	105	145	12.9662
(((.(((((((((.((......)).))))))))))))..)	chr8:27467899-27468192(-)$1	1	220	260	12.4507
(((.((((((((.(.((....))..).)))...))).)).	chr7:45928143-45928376(+)$1	1	79	119	10.2175
(...((....(((.((.....)))))))...)))))))))	chr2:62934030-62934313(+)$1	1	156	196	13.4022
((.((((.((((....(.....)....)))).))))))))	chr20:34302034-34302265(-)$1	1	189	229	10.9705
((((((((..(((.((((....))))))))))))))))))	chr17:48827772-48828232(+)$1	1	413	453	13.5651
((((.(((.((((.((......)))))).))).))))).)	chr3:133474112-133474368(+)$1	1	132	172	11.1557
((((((((....(((((......))))))))))).)))))	chr3:49050512-49050767(+)$1	1	9	49	10.8622
(((.((((...(((.........))))))).))))))))(	chr2:85768108-85768384(+)$1	1	120	160	12.0209
.((..(((....(((.((.....))..)))...)))..))	chr1:2160044-2160297(+)$1	1	143	183	12.8326
..(((.(((((((.(((.....))))))))))..))).))	chr17:76968340-76968610(-)$1	1	108	148	12.3231
(((((((....((.(((((....)))))))..))))))))	chr4:74280734-74280983(+)$1	1	161	201	12.2771
...((((...(((.((((......))))))).....))))	chr2:216226623-216226866(-)$1	1	79	119	12.9839
(((.((((...((.(((....)))))....))))...)))	chr1:990331-990589(+)$1	1	152	192	12.1248
((.(((....(((.((....)).)))....))))))).))	chr3:50112604-50112863(+)$1	1	29	69	11.2693
...(.(((...((.(((.....))))))))).))))))))	chr16:22308641-22308954(+)$1	1	53	93	13.5125
..((((((((((((((((....))))))).))))))))))	chr12:9261818-9262036(-)$1	1	127	167	11.1688
(((((((...(((((((..........)))))))...)))	chr3:120394539-120394800(-)$1	1	51	91	10.4746
....(((.(((((((((......))).)...))))).)))	chr11:130005415-130005675(+)$1	1	160	200	14.6807
(.((....(((((.(((......))))))))....)).))	chr9:117015063-117015310(+)$1	1	102	142	13.1906
...((((...(((......)))....))))...)).))))	chr2:216300495-216300709(-)$1	1	165	205	14.1503
.((((((((((((.(((...)))...))))))))))))((	chr11:75111356-75111611(+)$1	1	36	76	12.6515
((.((.(...(((((.(......).)))))).))..))))	chr22:42229146-42229420(+)$1	1	29	69	13.7115
.((.((....((.((((((....))).)))..))....))	chr1:43996598-43996862(+)$1	1	135	175	11.5300
.(.((((.(.(.((((....)))))).)))).).))..))	chr19:13054630-13054881(+)$1	1	86	126	10.2032
((((.((.(.(((.((((....))))..))).).)).)))	chr17:62500006-62500334(-)$1	1	233	273	11.1625
...((((...(((((....)))))..))))...))).)))	chr17:27420240-27420518(-)$1	1	233	273	11.7541
((.(((((..((((..(......)..)))))))))....)	chr19:579433-579714(+)$1	1	120	160	12.4694
...(((((((((((((((.....)).))))....))))))	chr17:48818916-48819139(+)$1	1	153	193	12.9565
(...(((((..(((((......)))))....)))))..))	chr10:21823270-21823549(+)$1	1	184	224	12.4250
..(((((((((((((((......)))....))))).))))	chr16:30081337-30081550(+)$1	1	43	83	12.9505

#PSSM
c : 0.13	# : 0.11	$ : 0.11	" : 0.09	[ : 0.07	b : 0.07	d : 0.07	= : 0.05	e : 0.05	i : 0.05	! : 0.03	: : 0.03	g : 0.03	h : 0.01	
" : 0.13	c : 0.11	# : 0.11	$ : 0.11	d : 0.09	= : 0.07	! : 0.05	[ : 0.05	b : 0.05	g : 0.03	e : 0.03	i : 0.03	h : 0.01	: : 0.01	a : 0.01	
c : 0.13	# : 0.11	" : 0.11	[ : 0.11	d : 0.09	$ : 0.07	= : 0.07	e : 0.05	g : 0.05	b : 0.05	i : 0.03	! : 0.01	: : 0.01	f : 0.01	
d : 0.30	[ : 0.13	= : 0.09	c : 0.09	e : 0.07	# : 0.05	b : 0.05	f : 0.03	" : 0.03	i : 0.03	! : 0.01	a : 0.01	g : 0.01	
d : 0.32	c : 0.15	b : 0.11	= : 0.09	e : 0.07	[ : 0.07	i : 0.05	f : 0.03	! : 0.01	# : 0.01	g : 0.01	
d : 0.32	c : 0.17	b : 0.09	= : 0.09	e : 0.07	[ : 0.05	i : 0.05	f : 0.03	a : 0.01	$ : 0.01	# : 0.01	g : 0.01	
d : 0.28	c : 0.17	# : 0.09	= : 0.09	e : 0.07	i : 0.05	[ : 0.03	f : 0.03	a : 0.03	g : 0.03	! : 0.01	$ : 0.01	b : 0.01	
" : 0.24	# : 0.11	c : 0.11	[ : 0.11	= : 0.07	! : 0.05	d : 0.05	i : 0.05	f : 0.03	g : 0.03	e : 0.03	a : 0.01	$ : 0.01	
" : 0.30	# : 0.13	i : 0.07	! : 0.07	a : 0.07	= : 0.07	c : 0.05	e : 0.05	d : 0.03	g : 0.03	$ : 0.01	f : 0.01	[ : 0.01	
" : 0.36	# : 0.13	[ : 0.09	i : 0.07	c : 0.05	d : 0.05	= : 0.05	! : 0.05	e : 0.05	$ : 0.01	g : 0.01	
c : 0.36	" : 0.13	d : 0.09	e : 0.09	i : 0.07	= : 0.05	# : 0.05	a : 0.03	g : 0.03	b : 0.01	! : 0.01	
c : 0.38	e : 0.11	d : 0.09	" : 0.07	b : 0.07	i : 0.05	= : 0.05	g : 0.05	# : 0.03	! : 0.01	[ : 0.01	
c : 0.42	e : 0.15	d : 0.11	= : 0.05	g : 0.05	b : 0.05	i : 0.03	[ : 0.03	! : 0.01	" : 0.01	# : 0.01	
[ : 0.40	e : 0.13	c : 0.11	d : 0.09	! : 0.03	o : 0.03	a : 0.03	g : 0.03	i : 0.01	b : 0.01	r : 0.01	= : 0.01	# : 0.01	
c : 0.30	d : 0.15	e : 0.15	b : 0.09	! : 0.05	o : 0.03	[ : 0.03	r : 0.03	g : 0.03	i : 0.01	a : 0.01	= : 0.01	# : 0.01	
c : 0.23	d : 0.17	e : 0.13	b : 0.13	! : 0.05	o : 0.03	r : 0.03	[ : 0.03	g : 0.03	i : 0.01	q : 0.01	l : 0.01	= : 0.01	# : 0.01	m : 0.01	
c : 0.23	d : 0.13	e : 0.11	o : 0.09	b : 0.09	a : 0.05	m : 0.05	! : 0.03	r : 0.03	g : 0.03	i : 0.01	q : 0.01	l : 0.01	= : 0.01	n : 0.01	
o : 0.28	n : 0.13	d : 0.11	m : 0.11	e : 0.07	b : 0.05	c : 0.03	q : 0.03	l : 0.03	r : 0.03	= : 0.01	g : 0.01	s : 0.01	
o : 0.34	n : 0.19	m : 0.17	c : 0.05	e : 0.05	q : 0.03	r : 0.03	d : 0.01	b : 0.01	= : 0.01	s : 0.01	l : 0.01	
o : 0.36	m : 0.19	n : 0.19	c : 0.07	l : 0.03	e : 0.03	q : 0.03	r : 0.03	s : 0.01	
o : 0.36	n : 0.19	m : 0.15	c : 0.07	l : 0.05	q : 0.03	r : 0.03	b : 0.01	s : 0.01	d : 0.01	e : 0.01	
o : 0.36	n : 0.17	c : 0.09	m : 0.09	l : 0.05	b : 0.05	q : 0.03	r : 0.03	3 : 0.01	s : 0.01	d : 0.01	e : 0.01	
o : 0.30	c : 0.13	b : 0.09	d : 0.07	n : 0.05	l : 0.03	4 : 0.03	q : 0.03	m : 0.03	e : 0.03	i : 0.01	3 : 0.01	a : 0.01	r : 0.01	] : 0.01	g : 0.01	s : 0.01	
c : 0.30	e : 0.13	o : 0.11	b : 0.11	d : 0.09	4 : 0.05	3 : 0.03	a : 0.03	i : 0.01	q : 0.01	2 : 0.01	g : 0.01	s : 0.01	
c : 0.28	d : 0.15	e : 0.11	2 : 0.07	b : 0.07	4 : 0.05	o : 0.05	] : 0.03	i : 0.01	f : 0.01	q : 0.01	g : 0.01	s : 0.01	3 : 0.01	a : 0.01	
c : 0.23	d : 0.15	e : 0.15	2 : 0.09	4 : 0.05	b : 0.05	i : 0.03	] : 0.03	3 : 0.03	a : 0.03	g : 0.03	f : 0.01	= : 0.01	s : 0.01	
d : 0.23	e : 0.17	] : 0.11	c : 0.07	2 : 0.07	4 : 0.07	= : 0.05	b : 0.05	i : 0.03	g : 0.03	f : 0.01	3 : 0.01	s : 0.01	
d : 0.24	c : 0.19	e : 0.15	4 : 0.07	2 : 0.05	= : 0.05	g : 0.05	i : 0.03	b : 0.03	] : 0.01	f : 0.01	3 : 0.01	a : 0.01	
c : 0.28	d : 0.17	4 : 0.13	e : 0.07	= : 0.05	g : 0.05	i : 0.03	f : 0.03	b : 0.03	3 : 0.03	5 : 0.01	2 : 0.01	] : 0.01	
c : 0.26	d : 0.17	4 : 0.13	= : 0.07	e : 0.07	i : 0.03	b : 0.03	f : 0.03	3 : 0.03	g : 0.03	5 : 0.01	a : 0.01	2 : 0.01	] : 0.01	
3 : 0.19	c : 0.15	4 : 0.11	d : 0.07	2 : 0.07	= : 0.07	e : 0.07	i : 0.05	] : 0.03	g : 0.03	a : 0.03	5 : 0.01	b : 0.01	f : 0.01	
3 : 0.15	] : 0.13	4 : 0.13	e : 0.09	5 : 0.07	2 : 0.07	= : 0.07	c : 0.07	i : 0.05	d : 0.03	g : 0.03	a : 0.01	f : 0.01	
3 : 0.15	= : 0.11	e : 0.11	d : 0.09	c : 0.09	4 : 0.07	5 : 0.07	a : 0.05	i : 0.05	2 : 0.03	] : 0.03	b : 0.03	f : 0.01	g : 0.01	
c : 0.17	d : 0.13	e : 0.13	= : 0.11	] : 0.07	4 : 0.07	b : 0.07	5 : 0.05	i : 0.05	g : 0.03	a : 0.01	f : 0.01	2 : 0.01	
c : 0.19	e : 0.15	d : 0.11	= : 0.11	b : 0.09	4 : 0.05	5 : 0.05	3 : 0.05	i : 0.05	] : 0.03	: : 0.01	g : 0.01	2 : 0.01	
e : 0.15	c : 0.15	d : 0.13	= : 0.11	3 : 0.09	b : 0.07	5 : 0.05	] : 0.05	i : 0.05	4 : 0.03	a : 0.01	g : 0.01	2 : 0.01	
e : 0.17	d : 0.13	] : 0.13	2 : 0.09	3 : 0.09	= : 0.07	i : 0.07	g : 0.05	c : 0.05	4 : 0.03	a : 0.01	5 : 0.01	b : 0.01	
e : 0.17	2 : 0.13	d : 0.13	g : 0.07	= : 0.07	i : 0.07	4 : 0.05	] : 0.05	b : 0.03	3 : 0.03	a : 0.03	c : 0.03	h : 0.01	5 : 0.01	f : 0.01	
d : 0.19	e : 0.15	b : 0.09	g : 0.09	] : 0.07	c : 0.07	i : 0.07	= : 0.05	2 : 0.03	h : 0.03	4 : 0.03	f : 0.03	5 : 0.01	
d : 0.23	e : 0.15	b : 0.11	g : 0.11	c : 0.09	= : 0.05	i : 0.05	h : 0.03	f : 0.03	] : 0.01	4 : 0.01	5 : 0.01	3 : 0.01	a : 0.01	

#score	642.015959717783
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_transcript_m3_run1.txt

#BEAR
dddccc[bb[ddddmmmmdddd]bb]ccc33	chr16:85696750-85697022(+)$1	272	109	140	12.3933
:ggggggg[cccooooooccc22ggggggg:	chr16:67226459-67226728(+)$1	269	13	44	9.4605
::ggggggg!!cccmmmmccc22ggggggg:	chr2:74657718-74657987(-)$1	269	44	75	10.4140
:ggggggg"""ccclllccc4444ggggggg	chr20:31018912-31019168(+)$1	256	193	224	10.5677
+++===========mmmm===========ee	chr3:50140263-50140531(+)$1	268	80	111	10.8602
::ggggggg[ddddmmmmdddd]ggggggg:	chr17:7477038-7477283(+)$1	245	113	144	11.7361
dd[eeeee!!ddddlllddddeeeee]dddd	chr3:15901024-15901321(-)$1	297	22	53	9.8732
!!a[eeeeeeeeeemmmmeeeee333eeeee	chr17:2593182-2593453(-)$1	271	34	65	10.6013
hhhhhaccc[cccooooooccc]ccc4444a	chr11:65211532-65211750(+)$1	218	102	133	9.8151
ccc[a####eeeeemmmmeeeee333accc4	chr4:1804325-1804569(+)$1	244	139	170	11.6048
:ccc"""gggggggooooooggggggg]ccc	chr20:61597719-61597958(+)$1	239	205	236	8.9599
bb[eeeee!!ddddlllddddeeeeebbfff	chr16:8961246-8961562(-)$1	316	149	180	9.6313
gggeeeee!!ddddmmmmdddd22eeeee:E	chr19:36303376-36303622(-)$1	246	130	161	11.1825
iiiiii!!bb[cccmmmmccc]bb]iiiiii	chr17:7477340-7477585(+)$1	245	172	203	11.5462
!ddddiiiiiiiiimmmmiiiiiiiii4444	chr2:27424256-27424525(-)$1	269	20	51	11.0383
ffffff!!ddddoooooodddd22ffffff]	chr11:61111157-61111423(+)$1	266	87	118	10.1767
::a[gggggggcccmmmmccc]ggggggg]a	chr13:113980077-113980362(-)$1	285	48	79	10.6066
f"""ccc[dddd[ammmma]dddd]cccfff	chr3:49051635-49051896(+)$1	261	174	205	10.7063
[ggggggg"""cccmmmmcccggggggg]a:	chr17:79663451-79663712(+)$1	261	119	150	11.8878
==[bb[cccddddnnnnndddd]ccc]bb==	chr7:889114-889416(+)$1	302	219	250	9.5461
cceeeee!!eeeeemmmmeeeeeeeeee]cc	chr4:83345956-83346198(-)$1	242	192	223	10.3074
iiiiii[bb[cccooooooccc22bb]iiii	chr3:50310553-50310832(+)$1	279	129	160	10.6175
a[ccc[bb!!ddddmmmmddddbbccc]add	chr11:65195281-65195517(+)$1	236	159	190	12.5545
:dddd[ccc[ddddmmmmdddd]cccdddd:	chr3:133472238-133472472(+)$1	234	119	150	10.9680
eee[eeeee!!cccmmmmccceeeeeeeeee	chr3:49051481-49051733(+)$1	252	101	132	10.4122
eeee!!ddddddddmmmmdddd333dddd]e	chr19:2012487-2012769(-)$1	282	137	168	12.1883
gbb!!bb[ddddoooooodddd]bb]bb]gg	chr19:36297423-36297674(-)$1	251	78	109	9.7878
iiiii!!cccddddmmmmdddd]ccc>>>>>	chr16:28845498-28845736(+)$1	238	164	195	12.6150
a[dddd!!ddddoooooodddd22ddddaee	chr16:89590234-89590477(+)$1	243	51	82	10.3039
e!!a[eeeeeddddmmmmdddd22eeeee]a	chr16:75037298-75037601(+)$1	303	184	215	12.4668
c[cccccc!!ddddllldddd4444ccc333	chr17:79961806-79962067(+)$1	261	213	244	12.1916
gggg"""gggggggmmmmggggggggggggg	chr16:2809949-2810206(+)$1	257	18	49	11.4739
hhhhhh[bb[ddddmmmmddddbbhhhhhhh	chr14:103567916-103568177(+)$1	261	217	248	10.3852
fff[bbddddddddmmmmdddd]dddd]bb2	chr2:242594535-242594756(+)$1	221	44	75	10.5379
[ccc[ccc[a[cccmmmmcccaccc22ccc]	chr21:46895207-46895477(+)$1	270	184	215	11.4383
%a[===========lll===========]a6	chr20:57467358-57467634(+)$1	276	159	190	10.6223
c[a[eeeee[ddddmmmmddddeeeee]a]c	chr22:46683853-46684152(+)$1	299	130	161	12.5258
ggggggg[bb[ddddllldddd]bbgggggg	chr2:21266413-21266674(-)$1	261	229	260	10.8729
fff[a[a!!eeeeemmmmeeeee22a]a]ff	chr2:178081414-178081656(+)$1	242	14	45	10.8335
============ccclllccc22========	chr16:50660335-50660606(+)$1	271	0	31	11.6879
==========ddddmmmmdddd]========	chr19:36303103-36303350(-)$1	247	179	210	14.8960
bccc[gggggggooooooggggggg]cccee	chr19:953546-953823(+)$1	277	194	225	9.4687
ggggg!!dddd[bbmmmmbbddddggggggg	chr16:15219566-15219826(-)$1	260	160	191	10.5309
============[ammmma]===========	chr11:46760405-46760645(+)$1	240	133	164	12.8419
[eeeeeccc[ddddmmmmdddd333ccc]ee	chr3:53853294-53853539(-)$1	245	137	168	13.4962
cffffff[abbcccmmmmccc333bb]a]ff	chr1:160276959-160277211(-)$1	252	211	242	10.5891
====[a$$$$$cccmmmmccc333a======	chr19:2228265-2228507(+)$1	242	18	49	12.7667
a[ccc[bb!!ddddmmmmddddbbccc]add	chr11:65195317-65195532(+)$1	215	123	154	12.5545
===="""ccc"""ammmma333ccc22====	chr4:1239507-1239766(-)$1	259	141	172	11.0790
:ccc[bb"""ddddmmmmdddd4444bb]cc	chr2:236476323-236476619(+)$1	296	205	236	12.2978
''dddd[a!!ddddmmmmdddd22a]dddd2	chr17:17585391-17585738(+)$1	347	200	231	11.6205
:ggggggg!!ddddmmmmdddd22ggggggg	chr20:57470494-57470750(+)$1	256	7	38	13.8708
J:ccc[ccc[ddddmmmmdddd]ccc22ccc	chr20:61913990-61914234(+)$1	244	53	84	11.1427
hhh[bbbb!!ddddmmmmdddd22bb333bb	chr19:939740-939999(+)$1	259	49	80	11.9461

#otherMatches

#Seq PSSM
ACUUCGAGGACCCCAGGAGGGGACCCCGGGA	chr16:85696750-85697022(+)$1	272	109	140	12.3933
GUCCUCGUGGCCCUUCCUGGCUGGCGAGGAG	chr16:67226459-67226728(+)$1	269	13	44	9.4605
CCCUCAGCCCUGCCUGUCGGCCUGGCUGGGA	chr2:74657718-74657987(-)$1	269	44	75	10.4140
UUGCUUCAAAAAUCAUAGGUCAAAUGAAGCG	chr20:31018912-31019168(+)$1	256	193	224	10.5677
UACUGCCUAUCUGAAGGAUUGGAUGGGCAGA	chr3:50140263-50140531(+)$1	268	80	111	10.8602
CGUGGGGGGAAGGGGAUGUCCUACCCUCCGA	chr17:7477038-7477283(+)$1	245	113	144	11.7361
GCUGCCGCGGGCUGGAACGGCGCGGCCGCGG	chr3:15901024-15901321(-)$1	297	22	53	9.8732
CCCAGCCUGUCUGAAAGUUCAGGGUUUAGGC	chr17:2593182-2593453(-)$1	271	34	65	10.6013
GGGGAGGGGGCAAAGGCAGUUGGCCCAACAC	chr11:65211532-65211750(+)$1	218	102	133	9.8151
ACGUGCAUCCUGUGAAACCACAGCCACCGUG	chr4:1804325-1804569(+)$1	244	139	170	11.6048
UCUGUUUGGUGAGGACCUUGCCUUACCCCAG	chr20:61597719-61597958(+)$1	239	205	236	8.9599
GGUCUUUGUUCCACCGAGUGGCAAAGCCAGC	chr16:8961246-8961562(-)$1	316	149	180	9.6313
GCCUGGCGCUGAGCCCUCGCUCCCUGUCACC	chr19:36303376-36303622(-)$1	246	130	161	11.1825
CGGCUGUCAGGAUUUCUGAGUGCUUCGGUCG	chr17:7477340-7477585(+)$1	245	172	203	11.5462
UUCUCAAAGCCCUCCUUUGAGGGCUUUCACA	chr2:27424256-27424525(-)$1	269	20	51	11.0383
CAGGGUCAGGAUGGGAGGGUCCAAGCCCUGC	chr11:61111157-61111423(+)$1	266	87	118	10.1767
AUGGAGCGUCUCGGUGUGCUGUGGACGCUGC	chr13:113980077-113980362(-)$1	285	48	79	10.6066
CCCCAGGCUCUUUCUUUUGCAGGAUUCUGGG	chr3:49051635-49051896(+)$1	261	174	205	10.7063
GCCCAGCCACAGGCCGGGGCCGGCUGGGGGA	chr17:79663451-79663712(+)$1	261	119	150	11.8878
GUGUGACAUGGUGGUCCUCACUGAUGACGAC	chr7:889114-889416(+)$1	302	219	250	9.5461
GACGACAUUGAAGAUUGGUCUUCUGUUGAUC	chr4:83345956-83346198(-)$1	242	192	223	10.3074
GAGGCAAGGCCAGGACCCGCUGACCCAUGCC	chr3:50310553-50310832(+)$1	279	129	160	10.6175
GAGGCCGACUGCUGAAGACAGCUCGCCACCC	chr11:65195281-65195517(+)$1	236	159	190	12.5545
GCCACUCUCUACUUGUGUGGGUUGAGGUGGG	chr3:133472238-133472472(+)$1	234	119	150	10.9680
GUCAUGCAGAUGCUCCCAGGCUUGCAGGCUC	chr3:49051481-49051733(+)$1	252	101	132	10.4122
gguuaggggcguggacccccacucagcucaa	chr19:2012487-2012769(-)$1	282	137	168	12.1883
CCUACCAGGCCUGUCUAAAGGUGUGCAGUGU	chr19:36297423-36297674(-)$1	251	78	109	9.7878
GGCACCUCAGAUGUAUCCAUAUCCUGUAUCC	chr16:28845498-28845736(+)$1	238	164	195	12.6150
GUGCAGGAUCUUCUGUGCAGGACGCUGCCCC	chr16:89590234-89590477(+)$1	243	51	82	10.3039
gaaugcagguuggcuggugccagaaccuggg	chr16:75037298-75037601(+)$1	303	184	215	12.4668
CCUGUGUGCAUGCCCCUGGCGCCCUCACCCU	chr17:79961806-79962067(+)$1	261	213	244	12.1916
uccuuaaucggggaaggcuuccugaaggagg	chr16:2809949-2810206(+)$1	257	18	49	11.4739
CUGAGCAUGAGGCUAUCAGGUCCGGCUCAGC	chr14:103567916-103568177(+)$1	261	217	248	10.3852
GGGUGCUGUCCAGGCCUUCCUGUGACGUGUC	chr2:242594535-242594756(+)$1	221	44	75	10.5379
AUCCGGAGACUCUGGCAGCGGGCUCGGGGAC	chr21:46895207-46895477(+)$1	270	184	215	11.4383
GUGGGGGGGCUGGUGACAUCAGCCCCUCGGA	chr20:57467358-57467634(+)$1	276	159	190	10.6223
GGGGGAUCCAUUGGGAAGCCAAGGGUUGUGU	chr22:46683853-46684152(+)$1	299	130	161	12.5258
AUUUCUUUCUCCUGUCUUACAGAAGAGGAAA	chr2:21266413-21266674(-)$1	261	229	260	10.8729
UAUGGGUCGCGGAGGGAACUUUGGAGGUGGU	chr2:178081414-178081656(+)$1	242	14	45	10.8335
gggaggccuccuggaggguccaggggaggcc	chr16:50660335-50660606(+)$1	271	0	31	11.6879
GGCGUGGUAUGAGGGGAACCUCGGUGCUAUG	chr19:36303103-36303350(-)$1	247	179	210	14.8960
cgcggaggcccuggggugggggccugugcgu	chr19:953546-953823(+)$1	277	194	225	9.4687
AGGUGGCUGGGAGCCCGAGCCCCACACCUGC	chr16:15219566-15219826(-)$1	260	160	191	10.5309
AGGGGCGUGGCUGGGCUAUGAGCUAUGCUCC	chr11:46760405-46760645(+)$1	240	133	164	12.8419
UCAGUCUGCGUGGUGCAUGCCAAUGGUAUGA	chr3:53853294-53853539(-)$1	245	137	168	13.4962
GUUUGGGUCGCUCGAAAUCGGUUUGCUGUCC	chr1:160276959-160277211(-)$1	252	211	242	10.5891
UGGGUGUCCCUCGGCAUGCCGCCUCCCUAUG	chr19:2228265-2228507(+)$1	242	18	49	12.7667
GAGGCCGACUGCUGAAGACAGCUCGCCACCC	chr11:65195317-65195532(+)$1	215	123	154	12.5545
UGGGACCAGGCCCCUUCUGCACCCUCCCCUG	chr4:1239507-1239766(-)$1	259	141	172	11.0790
UGCGGAGGGGCUUGAAAACAGGAGGGCUGUG	chr2:236476323-236476619(+)$1	296	205	236	12.2978
GAGUCAGGGCCGGCGAAGGCCGUGCGUGGCG	chr17:17585391-17585738(+)$1	347	200	231	11.6205
CCUUUUCUCUGCGUCGAAAUGUCAAGGAAAG	chr20:57470494-57470750(+)$1	256	7	38	13.8708
CCCAGAGCCGCUGGCAGCCCGGGGGCCAUUG	chr20:61913990-61914234(+)$1	244	53	84	11.1427
AAUACUGUAACGAACAUCUUCGGGGCGUGAG	chr19:939740-939999(+)$1	259	49	80	11.9461

#DB
((((((.((.((((....)))).)).)))..	chr16:85696750-85697022(+)$1	1	109	140	12.3933
.(((((((.(((......)))..))))))).	chr16:67226459-67226728(+)$1	1	13	44	9.4605
..(((((((..(((....)))..))))))).	chr2:74657718-74657987(-)$1	1	44	75	10.4140
.(((((((...(((...)))....)))))))	chr20:31018912-31019168(+)$1	1	193	224	10.5677
...(((((((((((....)))))))))))))	chr3:50140263-50140531(+)$1	1	80	111	10.8602
..(((((((.((((....)))).))))))).	chr17:7477038-7477283(+)$1	1	113	144	11.7361
((.(((((..((((...))))))))).))))	chr3:15901024-15901321(-)$1	1	22	53	9.8732
..(.((((((((((....)))))...)))))	chr17:2593182-2593453(-)$1	1	34	65	10.6013
(((((((((.(((......))).)))....)	chr11:65211532-65211750(+)$1	1	102	133	9.8151
(((.(....(((((....)))))...)))).	chr4:1804325-1804569(+)$1	1	139	170	11.6048
.(((...(((((((......))))))).)))	chr20:61597719-61597958(+)$1	1	205	236	8.9599
((.(((((..((((...)))))))))))(((	chr16:8961246-8961562(-)$1	1	149	180	9.6313
)))(((((..((((....))))..))))).)	chr19:36303376-36303622(-)$1	1	130	161	11.1825
((((((..((.(((....))).)).))))))	chr17:7477340-7477585(+)$1	1	172	203	11.5462
.(((((((((((((....)))))))))....	chr2:27424256-27424525(-)$1	1	20	51	11.0383
((((((..((((......))))..)))))).	chr11:61111157-61111423(+)$1	1	87	118	10.1767
..(.((((((((((....))).))))))).)	chr13:113980077-113980362(-)$1	1	48	79	10.6066
(...(((.((((.(....).)))).))))))	chr3:49051635-49051896(+)$1	1	174	205	10.7063
.(((((((...(((....)))))))))).).	chr17:79663451-79663712(+)$1	1	119	150	11.8878
((.((.(((((((.....)))).))).))))	chr7:889114-889416(+)$1	1	219	250	9.5461
(((((((..(((((....)))))))))).))	chr4:83345956-83346198(-)$1	1	192	223	10.3074
((((((.((.(((......)))..)).))))	chr3:50310553-50310832(+)$1	1	129	160	10.6175
(.(((.((..((((....))))))))).)))	chr11:65195281-65195517(+)$1	1	159	190	12.5545
.((((.(((.((((....)))).))))))).	chr3:133472238-133472472(+)$1	1	119	150	10.9680
(((.(((((..(((....)))))))))))))	chr3:49051481-49051733(+)$1	1	101	132	10.4122
((((..((((((((....))))...)))).)	chr19:2012487-2012769(-)$1	1	137	168	12.1883
(((..((.((((......)))).)).)).))	chr19:36297423-36297674(-)$1	1	78	109	9.7878
(((((..(((((((....)))).))).....	chr16:28845498-28845736(+)$1	1	164	195	12.6150
(.((((..((((......))))..)))))))	chr16:89590234-89590477(+)$1	1	51	82	10.3039
(..(.(((((((((....))))..))))).)	chr16:75037298-75037601(+)$1	1	184	215	12.4668
(.((((((..((((...))))....)))...	chr17:79961806-79962067(+)$1	1	213	244	12.1916
((((...(((((((....)))))))))))))	chr16:2809949-2810206(+)$1	1	18	49	11.4739
((((((.((.((((....)))))))))))))	chr14:103567916-103568177(+)$1	1	217	248	10.3852
(((.((((((((((....)))).)))).)).	chr2:242594535-242594756(+)$1	1	44	75	10.5379
.(((.(((.(.(((....)))))))..))).	chr21:46895207-46895477(+)$1	1	184	215	11.4383
.(.(((((((((((...))))))))))).).	chr20:57467358-57467634(+)$1	1	159	190	10.6223
(.(.(((((.((((....))))))))).).)	chr22:46683853-46684152(+)$1	1	130	161	12.5258
(((((((.((.((((...)))).))))))))	chr2:21266413-21266674(-)$1	1	229	260	10.8729
(((.(.(..(((((....)))))..).).))	chr2:178081414-178081656(+)$1	1	14	45	10.8335
(((((((((((((((...)))..))))))))	chr16:50660335-50660606(+)$1	1	0	31	11.6879
((((((((((((((....)))).))))))))	chr19:36303103-36303350(-)$1	1	179	210	14.8960
)(((.(((((((......))))))).)))((	chr19:953546-953823(+)$1	1	194	225	9.4687
(((((..((((.((....)))))))))))))	chr16:15219566-15219826(-)$1	1	160	191	10.5309
((((((((((((.(....).)))))))))))	chr11:46760405-46760645(+)$1	1	133	164	12.8419
.((((((((.((((....))))...))).))	chr3:53853294-53853539(-)$1	1	137	168	13.4962
(((((((.((((((....)))...)).).))	chr1:160276959-160277211(-)$1	1	211	242	10.5891
((((.(.....(((....)))...)))))))	chr19:2228265-2228507(+)$1	1	18	49	12.7667
(.(((.((..((((....))))))))).)))	chr11:65195317-65195532(+)$1	1	123	154	12.5545
((((...(((...(....)...)))..))))	chr4:1239507-1239766(-)$1	1	141	172	11.0790
.(((.((...((((....))))....)).))	chr2:236476323-236476619(+)$1	1	205	236	12.2978
..((((.(..((((....))))..).)))).	chr17:17585391-17585738(+)$1	1	200	231	11.6205
.(((((((..((((....))))..)))))))	chr20:57470494-57470750(+)$1	1	7	38	13.8708
(.(((.(((.((((....)))).)))..)))	chr20:61913990-61914234(+)$1	1	53	84	11.1427
(((.((((..((((....))))..))...))	chr19:939740-939999(+)$1	1	49	80	11.9461

#PSSM
: : 0.16	= : 0.11	c : 0.09	g : 0.09	f : 0.07	h : 0.05	i : 0.05	[ : 0.05	a : 0.05	e : 0.05	d : 0.03	! : 0.03	b : 0.03	+ : 0.01	% : 0.01	' : 0.01	J : 0.01	
g : 0.14	c : 0.11	= : 0.11	[ : 0.09	d : 0.07	: : 0.07	f : 0.07	h : 0.05	i : 0.05	e : 0.05	! : 0.03	b : 0.03	+ : 0.01	" : 0.01	a : 0.01	' : 0.01	
g : 0.18	c : 0.16	d : 0.09	= : 0.09	[ : 0.07	f : 0.07	e : 0.07	a : 0.05	h : 0.05	i : 0.05	+ : 0.01	" : 0.01	b : 0.01	! : 0.01	
c : 0.16	g : 0.16	[ : 0.14	= : 0.12	e : 0.11	d : 0.07	i : 0.05	h : 0.03	f : 0.03	" : 0.01	b : 0.01	! : 0.01	a : 0.01	
g : 0.16	e : 0.14	c : 0.11	= : 0.09	[ : 0.09	d : 0.07	" : 0.05	i : 0.05	b : 0.05	h : 0.03	a : 0.03	f : 0.03	! : 0.03	
g : 0.16	e : 0.16	[ : 0.11	= : 0.09	c : 0.07	b : 0.07	" : 0.05	i : 0.05	! : 0.05	a : 0.03	f : 0.03	d : 0.03	# : 0.01	h : 0.01	
g : 0.16	e : 0.14	c : 0.14	= : 0.09	! : 0.09	b : 0.09	[ : 0.07	" : 0.05	d : 0.03	# : 0.01	i : 0.01	a : 0.01	f : 0.01	$ : 0.01	
g : 0.18	c : 0.16	e : 0.12	b : 0.11	= : 0.09	! : 0.09	[ : 0.07	d : 0.05	# : 0.01	i : 0.01	$ : 0.01	" : 0.01	a : 0.01	
! : 0.20	c : 0.12	d : 0.12	g : 0.11	b : 0.09	= : 0.09	e : 0.07	" : 0.05	[ : 0.03	# : 0.01	i : 0.01	a : 0.01	$ : 0.01	
! : 0.20	[ : 0.16	d : 0.14	= : 0.09	e : 0.09	g : 0.07	c : 0.05	" : 0.05	b : 0.05	i : 0.01	a : 0.01	$ : 0.01	
d : 0.51	= : 0.07	e : 0.07	g : 0.07	c : 0.05	" : 0.05	[ : 0.05	! : 0.03	i : 0.01	b : 0.01	$ : 0.01	
d : 0.51	c : 0.22	= : 0.07	e : 0.07	g : 0.05	i : 0.01	[ : 0.01	" : 0.01	
d : 0.44	c : 0.22	o : 0.09	e : 0.07	= : 0.03	g : 0.03	[ : 0.03	i : 0.01	b : 0.01	" : 0.01	
d : 0.42	c : 0.18	o : 0.12	e : 0.07	a : 0.05	= : 0.03	g : 0.03	i : 0.01	n : 0.01	b : 0.01	
m : 0.70	o : 0.14	l : 0.09	n : 0.01	d : 0.01	c : 0.01	
m : 0.70	o : 0.14	l : 0.12	n : 0.01	
m : 0.70	o : 0.14	l : 0.12	n : 0.01	
m : 0.70	o : 0.14	d : 0.05	l : 0.03	c : 0.01	n : 0.01	= : 0.01	
d : 0.49	c : 0.20	e : 0.07	o : 0.05	a : 0.05	= : 0.03	g : 0.03	i : 0.01	b : 0.01	
d : 0.49	c : 0.24	e : 0.07	= : 0.03	] : 0.03	g : 0.03	o : 0.01	i : 0.01	b : 0.01	3 : 0.01	
d : 0.53	c : 0.22	e : 0.07	= : 0.05	g : 0.05	4 : 0.01	i : 0.01	3 : 0.01	
d : 0.48	e : 0.12	g : 0.07	2 : 0.05	= : 0.05	3 : 0.05	4 : 0.03	c : 0.03	] : 0.03	i : 0.01	a : 0.01	
] : 0.20	2 : 0.20	e : 0.14	g : 0.09	b : 0.07	3 : 0.07	4 : 0.05	= : 0.05	d : 0.03	c : 0.03	i : 0.01	
2 : 0.16	g : 0.14	b : 0.12	c : 0.12	3 : 0.11	= : 0.09	e : 0.09	4 : 0.05	d : 0.05	i : 0.01	
g : 0.20	c : 0.16	e : 0.12	b : 0.11	= : 0.09	3 : 0.07	] : 0.03	d : 0.03	4 : 0.03	a : 0.03	i : 0.01	f : 0.01	h : 0.01	2 : 0.01	
g : 0.20	c : 0.18	e : 0.12	= : 0.11	] : 0.07	b : 0.05	d : 0.05	3 : 0.03	i : 0.03	2 : 0.03	f : 0.01	h : 0.01	a : 0.01	4 : 0.01	
g : 0.20	c : 0.12	= : 0.11	e : 0.11	] : 0.09	d : 0.09	b : 0.05	2 : 0.05	i : 0.03	4 : 0.01	a : 0.01	f : 0.01	> : 0.01	h : 0.01	3 : 0.01	
g : 0.18	c : 0.12	= : 0.12	d : 0.09	e : 0.09	] : 0.09	b : 0.07	4 : 0.03	i : 0.03	a : 0.03	f : 0.01	> : 0.01	h : 0.01	2 : 0.01	3 : 0.01	
g : 0.16	] : 0.14	c : 0.11	= : 0.11	d : 0.07	e : 0.07	a : 0.07	f : 0.05	4 : 0.03	i : 0.03	b : 0.03	3 : 0.03	> : 0.01	h : 0.01	
g : 0.16	e : 0.11	c : 0.11	= : 0.11	d : 0.09	f : 0.09	] : 0.07	3 : 0.03	4 : 0.03	i : 0.03	a : 0.03	b : 0.03	: : 0.01	> : 0.01	h : 0.01	
e : 0.12	g : 0.11	= : 0.11	: : 0.09	c : 0.09	f : 0.07	d : 0.05	a : 0.05	3 : 0.03	4 : 0.03	i : 0.03	] : 0.03	2 : 0.03	E : 0.01	> : 0.01	h : 0.01	6 : 0.01	b : 0.01	

#score	606.5020437144403
#seq	54
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_transcript_m2_run2.txt

#BEAR
c!!ggggggg[cccmmmmcccggggggg22c	chr1:173835024-173835260(-)$1	236	144	175	13.9255
::ggggggg!!cccmmmmccc22ggggggg:	chr22:39711122-39711372(-)$1	250	139	170	10.9989
gggggggggggggglllggggggg]gggggg	chr20:17943361-17943565(-)$1	204	33	64	13.0838
========="""bblllbb333=========	chr3:186335001-186335234(+)$1	233	38	69	13.9036
!ddddeeeee[ccclllccc]eeeee22ddd	chr2:203156000-203156243(+)$1	243	15	46	10.8570
ddggggggg####ammmma4444ggggggg2	chr17:8076800-8077005(-)$1	205	71	102	12.6315
gggggggggggggglllggggggg]gggggg	chr20:17943333-17943553(-)$1	220	21	52	13.0838
d!!eeeee[a[bboooooobb]aeeeee22d	chr1:173833902-173834104(-)$1	202	3	34	9.6566
c[eeeee!!cccbbmmmmbb]ccceeeee]c	chr11:63676497-63676724(+)$1	227	55	86	10.5732
gggg"""bb!!cccmmmmccc]bbggggggg	chr2:203142783-203143008(+)$1	225	15	46	12.6053
b"""==========mmmm==========333	chrX:20154350-20154621(-)$1	271	94	125	13.5518
[dddd!!gggggggmmmmggggggg22dddd	chr17:64224115-64224331(-)$1	216	124	155	11.1219
ccc[bbffffffccclllccc]ffffff]bb	chr17:42429608-42429858(+)$1	250	99	130	9.8023
iiiiiiiiia[cccnnnnnccc]a]iiiiii	chr1:230845951-230846193(-)$1	242	132	163	12.6017
e[ccc[a!!eeeeemmmmeeeee22acccee	chr11:62622060-62622267(-)$1	207	172	203	8.9861
ggggggg####cccnnnnnccc333gggggg	chr19:3982407-3982671(-)$1	264	120	151	12.4252
ccc[ffffff[bboooooobbffffff]ccc	chr15:25227070-25227283(+)$1	213	65	96	10.0234
gggggggggggggglllggggggg]gggggg	chr20:17943365-17943577(-)$1	212	45	76	13.0838
!bb[ffffff!!bbmmmmbb]ffffff]bb2	chr20:47897166-47897386(+)$1	220	163	194	10.1094
eee[ccc[bb[ccclllccc]bb4444ccc]	chr2:216236535-216236781(-)$1	246	162	193	11.4535
CC============mmmm============D	chr19:50000890-50001119(+)$1	229	11	42	10.9016
=========[ddddllldddd22========	chr17:7480027-7480293(+)$1	266	155	186	12.0822
ddd[ccc$$$$$bbmmmmbb4444ccc]ddd	chr16:2204940-2205169(-)$1	229	165	196	10.1883
gggggggggggggglllggggggg]gggggg	chr20:17943353-17943561(-)$1	208	29	60	13.0838
e!!eeeee[a[bboooooobb]aeeeee22e	chr1:173833904-173834141(-)$1	237	40	71	9.5969
cc!!ffffff[ccclllccc]ffffff]ccc	chr6:31804781-31804985(+)$1	204	85	116	12.5649
gggggggggggggglllggggggg]gggggg	chr20:17943377-17943610(-)$1	233	78	109	13.0838
!eeeee!!bb[cccmmmmccc]bb333eeee	chr14:94849054-94849325(-)$1	271	154	185	12.0102
eeeebb$$$$$cccmmmmccc333bb22eee	chr1:173836717-173836977(-)$1	260	177	208	10.1813
gggggggggg[cccnnnnnccc22ggggggg	chrX:135961293-135961532(-)$1	239	80	111	12.2397
c!!ccc[ccc[ccclllccc]ccc]ccc444	chrX:132887833-132888119(-)$1	286	233	264	12.6306
!ddddeeeee[ccclllccc]eeeee22ddd	chr2:203155957-203156200(+)$1	243	58	89	10.8570
========="""bblllbb333=========	chr3:186335034-186335239(+)$1	205	5	36	13.9036
iiiiiii[bb[cccmmmmccc]bb]iiiiii	chr10:101996729-101997001(-)$1	272	27	58	13.5501
dddd[ccc"""cccmmmmccc333cccdddd	chr11:62622013-62622219(-)$1	206	41	72	12.1680
ddd[ffffff!!bbmmmmbb]ffffff22dd	chr17:7480119-7480347(+)$1	228	10	41	10.7621
ccc!!ffffffcccmmmmccc22ffffff22	chr1:31440911-31441174(-)$1	263	43	74	11.2481
!!dddd[gggggggmmmmggggggg22dddd	chr14:21865369-21865613(-)$1	244	86	117	11.2179
==========[ccclllccc333========	chr11:75111380-75111614(+)$1	234	15	46	15.4087
cc!!ffffff[ccclllccc]ffffff]ccc	chr6:31804777-31804981(+)$1	204	89	120	12.5649
eeeee[a[ggggggglllgggggggaeeeee	chr3:58109044-58109295(+)$1	251	55	86	10.3406
gggggiiiiiiiiimmmmiiiiiiiii333g	chr5:137896645-137896858(-)$1	213	163	194	13.2816
Dgggggggbb[cccmmmmccc]bb]gggggg	chr11:17097281-17097502(-)$1	221	88	119	12.4171
eegggggggddddnnnnndddd333gggggg	chr22:39711175-39711409(-)$1	234	23	54	9.7171
!iiiiiiiii[cccmmmmccciiiiiiiiic	chr16:33965408-33965636(+)$1	228	184	215	14.3595
==========[bbnnnnnbb]==========	chr12:6619566-6619812(+)$1	246	4	35	12.6322
!!dddd[gggggggmmmmggggggg22dddd	chr14:21865454-21865661(-)$1	207	134	165	11.2179

#otherMatches

#Seq PSSM
UCUAACUGACUAAAGGCAUUUGUUAGUUUUG	chr1:173835024-173835260(-)$1	236	144	175	13.9255
UCCUUCUGAGAACAGCCUUGUGGUCAGAAGU	chr22:39711122-39711372(-)$1	250	139	170	10.9989
AGCCUCAGUUCCUGUUCUAGGAACUUGAGGC	chr20:17943361-17943565(-)$1	204	33	64	13.0838
CAGGGUGGUGCACGCCGCGAAAGCUGCCCUG	chr3:186335001-186335234(+)$1	233	38	69	13.9036
CUAGUUGUGGUGUUACCAGCUCUAUAGUACU	chr2:203156000-203156243(+)$1	243	15	46	10.8570
GAGUGCAGAAUGUCGGCUGUUUGUCUGUauc	chr17:8076800-8077005(-)$1	205	71	102	12.6315
AGCCUCAGUUCCUGUUCUAGGAACUUGAGGC	chr20:17943333-17943553(-)$1	220	21	52	13.0838
uacaggcgugagccaccaugccccgccUCAA	chr1:173833902-173834104(-)$1	202	3	34	9.6566
CGGCACGCCGGGCCACGAGGACUUCGUGCAG	chr11:63676497-63676724(+)$1	227	55	86	10.5732
GUUGUUUGCUUCAGUUGCCUGUGUUAACCUU	chr2:203142783-203143008(+)$1	225	15	46	12.6053
CUGAGAUCUGCUUUUACUGAAGUGGAUCAAU	chrX:20154350-20154621(-)$1	271	94	125	13.5518
CGAGGAGGGAUGAGAAAGUUUAUCUGCCCUC	chr17:64224115-64224331(-)$1	216	124	155	11.1219
GGCUGUGUGCUGCGAGGAUCGCCAGCACUGC	chr17:42429608-42429858(+)$1	250	99	130	9.8023
AGGUCCUGUCUGCCCUGCAGGCUGUACAGGG	chr1:230845951-230846193(-)$1	242	132	163	12.6017
GCAGUUGUUGUUUAUGAAUAAGCUUCAUUCC	chr11:62622060-62622267(-)$1	207	172	203	8.9861
UUCUUCACUUUGACCAGAUGUCUACUGAAGA	chr19:3982407-3982671(-)$1	264	120	151	12.4252
GGCUAGGUUCAUGAUGACACAGGACCUUGUC	chr15:25227070-25227283(+)$1	213	65	96	10.0234
AGCCUCAGUUCCUGUUCUAGGAACUUGAGGC	chr20:17943365-17943577(-)$1	212	45	76	13.0838
UUGUUUUCUGCUUAUCUUUAUCAGAGACUAU	chr20:47897166-47897386(+)$1	220	163	194	10.1094
UCUCUUCACUUCUCAUGGGGCAGCACAGAAA	chr2:216236535-216236781(-)$1	246	162	193	11.4535
GUCUUGGGGCCCAGACUCCUGGGUCCUGGGU	chr19:50000890-50001119(+)$1	229	11	42	10.9016
CAGCCCUGGCAGUGUCCUACUUCCCAGGGCU	chr17:7480027-7480293(+)$1	266	155	186	12.0822
GGGGAGCUGAGAGUGGAAACAGGUGUUGCCC	chr16:2204940-2205169(-)$1	229	165	196	10.1883
AGCCUCAGUUCCUGUUCUAGGAACUUGAGGC	chr20:17943353-17943561(-)$1	208	29	60	13.0838
uacaggcgugagccaccaugccccgccUCAA	chr1:173833904-173834141(-)$1	237	40	71	9.5969
CACAGACUAGAGUCUCCGAUGCUGGUCAUGA	chr6:31804781-31804985(+)$1	204	85	116	12.5649
AGCCUCAGUUCCUGUUCUAGGAACUUGAGGC	chr20:17943377-17943610(-)$1	233	78	109	13.0838
AGCUGACCACCGGCAAUGGCCUGUUCCUCAG	chr14:94849054-94849325(-)$1	271	154	185	12.0102
UCACCCGAGUAAGCUAUUGUUAAGGGCCGUG	chr1:173836717-173836977(-)$1	260	177	208	10.1813
GGCUAUUAUAAUUAAAAUAUAAGCUAUGAUG	chrX:135961293-135961532(-)$1	239	80	111	12.2397
GUUUCCAAGUCACUGCAAGUCACUAGGAUCU	chrX:132887833-132888119(-)$1	286	233	264	12.6306
CUAGUUGUGGUGUUACCAGCUCUAUAGUACU	chr2:203155957-203156200(+)$1	243	58	89	10.8570
CAGGGUGGUGCACGCCGCGAAAGCUGCCCUG	chr3:186335034-186335239(+)$1	205	5	36	13.9036
AGGCUUGUGACGGAGAUAUCUCUCUUAAGCC	chr10:101996729-101997001(-)$1	272	27	58	13.5501
AUCACGUUACUGUCAGAUGAUUUGAAUUGAU	chr11:62622013-62622219(-)$1	206	41	72	12.1680
CUCUGUGAUGGAGCCCAUGCGUGUCAUCUGA	chr17:7480119-7480347(+)$1	228	10	41	10.7621
GGGAAUGAGCAGUGCUUUCACCUUGCUUAGG	chr1:31440911-31441174(-)$1	263	43	74	11.2481
CACCAGGUAGGGCAGUGUUGCCCUGGUUUGG	chr14:21865369-21865613(-)$1	244	86	117	11.2179
GAGCAGUUUCUUGUUUUGCAUGUGGAACUGU	chr11:75111380-75111614(+)$1	234	15	46	15.4087
CACAGACUAGAGUCUCCGAUGCUGGUCAUGA	chr6:31804777-31804981(+)$1	204	89	120	12.5649
UCGUGGCAUCGGGGCCAGGUCUCGAGCACGG	chr3:58109044-58109295(+)$1	251	55	86	10.3406
AUAGGAUUAUCUUGGACCUAAGAUAGUGACC	chr5:137896645-137896858(-)$1	213	163	194	13.2816
cacugugaugaugguuuuccaacauucgcag	chr11:17097281-17097502(-)$1	221	88	119	12.4171
AAAGGCUACAAAGGUGAGCUUUGCGGUGGCU	chr22:39711175-39711409(-)$1	234	23	54	9.7171
UCCCCGGGGGUGCCUCCGGGCUCCUCGGGGU	chr16:33965408-33965636(+)$1	228	184	215	14.3595
CCAGUUGCUGGAGAGAAAUUGUGGUAACUGG	chr12:6619566-6619812(+)$1	246	4	35	12.6322
CACCAGGUAGGGCAGUGUUGCCCUGGUUUGG	chr14:21865454-21865661(-)$1	207	134	165	11.2179

#DB
(..(((((((.(((....))))))))))..)	chr1:173835024-173835260(-)$1	1	144	175	13.9255
..(((((((..(((....)))..))))))).	chr22:39711122-39711372(-)$1	1	139	170	10.9989
((((((((((((((...))))))).))))))	chr20:17943361-17943565(-)$1	1	33	64	13.0838
(((((((((...((...))...)))))))))	chr3:186335001-186335234(+)$1	1	38	69	13.9036
.(((((((((.(((...))).)))))..)))	chr2:203156000-203156243(+)$1	1	15	46	10.8570
(((((((((....(....)....))))))).	chr17:8076800-8077005(-)$1	1	71	102	12.6315
((((((((((((((...))))))).))))))	chr20:17943333-17943553(-)$1	1	21	52	13.0838
(..(((((.(.((......)).))))))..)	chr1:173833902-173834104(-)$1	1	3	34	9.6566
(.(((((..(((((....)).)))))))).)	chr11:63676497-63676724(+)$1	1	55	86	10.5732
((((...((..(((....))).)))))))))	chr2:203142783-203143008(+)$1	1	15	46	12.6053
(...((((((((((....))))))))))...	chrX:20154350-20154621(-)$1	1	94	125	13.5518
.((((..(((((((....)))))))..))))	chr17:64224115-64224331(-)$1	1	124	155	11.1219
(((.(((((((((((...))).)))))).))	chr17:42429608-42429858(+)$1	1	99	130	9.8023
((((((((((.(((.....))).).))))))	chr1:230845951-230846193(-)$1	1	132	163	12.6017
(.(((.(..(((((....)))))..))))))	chr11:62622060-62622267(-)$1	1	172	203	8.9861
(((((((....(((.....)))...))))))	chr19:3982407-3982671(-)$1	1	120	151	12.4252
(((.((((((.((......)))))))).)))	chr15:25227070-25227283(+)$1	1	65	96	10.0234
((((((((((((((...))))))).))))))	chr20:17943365-17943577(-)$1	1	45	76	13.0838
.((.((((((..((....)).)))))).)).	chr20:47897166-47897386(+)$1	1	163	194	10.1094
(((.(((.((.(((...))).))....))).	chr2:216236535-216236781(-)$1	1	162	193	11.4535
((((((((((((((....))))))))))))(	chr19:50000890-50001119(+)$1	1	11	42	10.9016
(((((((((.((((...))))..))))))))	chr17:7480027-7480293(+)$1	1	155	186	12.0822
(((.(((.....((....))....))).)))	chr16:2204940-2205169(-)$1	1	165	196	10.1883
((((((((((((((...))))))).))))))	chr20:17943353-17943561(-)$1	1	29	60	13.0838
(..(((((.(.((......)).))))))..)	chr1:173833904-173834141(-)$1	1	40	71	9.5969
((..((((((.(((...))).)))))).)))	chr6:31804781-31804985(+)$1	1	85	116	12.5649
((((((((((((((...))))))).))))))	chr20:17943377-17943610(-)$1	1	78	109	13.0838
.(((((..((.(((....))).))...))))	chr14:94849054-94849325(-)$1	1	154	185	12.0102
((((((.....(((....)))...))..)))	chr1:173836717-173836977(-)$1	1	177	208	10.1813
)))(((((((.(((.....)))..)))))))	chrX:135961293-135961532(-)$1	1	80	111	12.2397
(..(((.(((.(((...))).))).)))...	chrX:132887833-132888119(-)$1	1	233	264	12.6306
.(((((((((.(((...))).)))))..)))	chr2:203155957-203156200(+)$1	1	58	89	10.8570
(((((((((...((...))...)))))))))	chr3:186335034-186335239(+)$1	1	5	36	13.9036
(((((((.((.(((....))).)).))))))	chr10:101996729-101997001(-)$1	1	27	58	13.5501
((((.(((...(((....)))...)))))))	chr11:62622013-62622219(-)$1	1	41	72	12.1680
(((.((((((..((....)).))))))..))	chr17:7480119-7480347(+)$1	1	10	41	10.7621
(((..(((((((((....)))..))))))..	chr1:31440911-31441174(-)$1	1	43	74	11.2481
..((((.(((((((....)))))))..))))	chr14:21865369-21865613(-)$1	1	86	117	11.2179
((((((((((.(((...)))...))))))))	chr11:75111380-75111614(+)$1	1	15	46	15.4087
((..((((((.(((...))).)))))).)))	chr6:31804777-31804981(+)$1	1	89	120	12.5649
(((((.(.(((((((...)))))))))))))	chr3:58109044-58109295(+)$1	1	55	86	10.3406
((((((((((((((....)))))))))...)	chr5:137896645-137896858(-)$1	1	163	194	13.2816
((((((((((.(((....))).)).))))))	chr11:17097281-17097502(-)$1	1	88	119	12.4171
(((((((((((((.....))))...))))))	chr22:39711175-39711409(-)$1	1	23	54	9.7171
.(((((((((.(((....)))))))))))))	chr16:33965408-33965636(+)$1	1	184	215	14.3595
((((((((((.((.....)).))))))))))	chr12:6619566-6619812(+)$1	1	4	35	12.6322
..((((.(((((((....)))))))..))))	chr14:21865454-21865661(-)$1	1	134	165	11.2179

#PSSM
g : 0.19	c : 0.17	! : 0.14	e : 0.12	= : 0.10	d : 0.10	i : 0.04	: : 0.02	b : 0.02	[ : 0.02	C : 0.02	D : 0.02	
g : 0.21	d : 0.14	! : 0.12	= : 0.10	c : 0.10	e : 0.10	i : 0.06	[ : 0.04	: : 0.02	" : 0.02	b : 0.02	C : 0.02	
g : 0.27	d : 0.17	! : 0.12	= : 0.12	e : 0.10	c : 0.08	i : 0.06	" : 0.02	b : 0.02	
g : 0.29	= : 0.12	d : 0.12	e : 0.12	[ : 0.12	i : 0.06	! : 0.06	c : 0.04	" : 0.02	
g : 0.27	= : 0.14	d : 0.10	e : 0.10	f : 0.10	c : 0.08	i : 0.06	b : 0.04	" : 0.02	[ : 0.02	! : 0.02	
g : 0.25	= : 0.14	e : 0.12	f : 0.12	i : 0.08	c : 0.08	b : 0.04	[ : 0.04	d : 0.04	" : 0.02	! : 0.02	
g : 0.25	= : 0.14	f : 0.14	e : 0.10	i : 0.08	c : 0.06	[ : 0.06	! : 0.04	a : 0.04	" : 0.02	$ : 0.02	
g : 0.29	= : 0.14	f : 0.14	e : 0.08	! : 0.06	i : 0.06	[ : 0.06	$ : 0.04	c : 0.04	b : 0.02	# : 0.02	
g : 0.29	= : 0.14	f : 0.14	b : 0.10	i : 0.06	e : 0.04	[ : 0.04	! : 0.04	$ : 0.04	# : 0.02	c : 0.02	" : 0.02	
g : 0.23	f : 0.14	= : 0.08	b : 0.08	" : 0.06	e : 0.06	a : 0.06	! : 0.04	# : 0.04	c : 0.04	$ : 0.04	i : 0.04	[ : 0.02	d : 0.02	
[ : 0.38	g : 0.19	! : 0.08	" : 0.06	# : 0.04	= : 0.04	f : 0.04	d : 0.04	$ : 0.04	c : 0.02	e : 0.02	i : 0.02	
c : 0.44	g : 0.19	b : 0.08	" : 0.04	= : 0.04	! : 0.04	d : 0.04	# : 0.02	f : 0.02	e : 0.02	$ : 0.02	i : 0.02	
c : 0.44	b : 0.21	g : 0.19	= : 0.04	d : 0.04	# : 0.02	e : 0.02	i : 0.02	
c : 0.44	g : 0.19	b : 0.12	o : 0.06	= : 0.04	n : 0.04	a : 0.02	e : 0.02	d : 0.02	i : 0.02	
m : 0.46	l : 0.31	n : 0.10	o : 0.06	c : 0.02	g : 0.02	
m : 0.46	l : 0.36	n : 0.10	o : 0.06	
m : 0.46	l : 0.36	n : 0.10	o : 0.06	
m : 0.46	c : 0.14	g : 0.10	n : 0.10	o : 0.06	b : 0.04	l : 0.04	d : 0.02	
c : 0.38	g : 0.19	b : 0.14	o : 0.06	n : 0.06	= : 0.04	d : 0.04	a : 0.02	e : 0.02	i : 0.02	
c : 0.44	g : 0.19	b : 0.17	3 : 0.04	= : 0.04	d : 0.04	4 : 0.02	e : 0.02	i : 0.02	
c : 0.29	] : 0.21	g : 0.19	3 : 0.06	b : 0.06	4 : 0.04	= : 0.04	d : 0.04	e : 0.02	i : 0.02	
g : 0.21	] : 0.14	3 : 0.10	c : 0.10	f : 0.10	2 : 0.06	e : 0.06	= : 0.06	4 : 0.04	i : 0.04	b : 0.02	d : 0.02	
g : 0.21	f : 0.12	= : 0.10	b : 0.10	3 : 0.10	2 : 0.08	e : 0.06	4 : 0.04	a : 0.04	c : 0.04	i : 0.04	] : 0.02	
g : 0.25	= : 0.14	f : 0.14	e : 0.08	b : 0.08	3 : 0.08	c : 0.04	2 : 0.04	4 : 0.04	i : 0.04	a : 0.02	
g : 0.19	] : 0.19	= : 0.14	f : 0.14	e : 0.10	3 : 0.06	c : 0.04	i : 0.04	2 : 0.02	4 : 0.02	b : 0.02	
g : 0.27	= : 0.14	f : 0.14	e : 0.10	i : 0.08	2 : 0.06	c : 0.06	a : 0.04	4 : 0.02	3 : 0.02	b : 0.02	
g : 0.27	= : 0.14	f : 0.14	2 : 0.12	e : 0.08	i : 0.08	c : 0.08	4 : 0.02	3 : 0.02	
g : 0.27	= : 0.14	e : 0.10	] : 0.10	2 : 0.08	d : 0.08	i : 0.06	c : 0.06	f : 0.04	3 : 0.02	
g : 0.25	d : 0.14	= : 0.12	c : 0.10	2 : 0.08	e : 0.08	i : 0.06	3 : 0.04	] : 0.02	b : 0.02	4 : 0.02	f : 0.02	
g : 0.25	d : 0.17	= : 0.12	2 : 0.08	e : 0.08	c : 0.08	i : 0.06	3 : 0.04	b : 0.04	] : 0.02	4 : 0.02	
g : 0.23	d : 0.19	c : 0.12	= : 0.10	e : 0.10	2 : 0.06	i : 0.04	: : 0.02	3 : 0.02	b : 0.02	] : 0.02	D : 0.02	4 : 0.02	

#score	558.6906345610786
#seq	47
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF324PNB_SSB_UTR_m2_run2.txt

#BEAR
[ffffff"""a[ddddoooooodddd]affffff]ffff	chr1:3689251-3689503(+)$1	252	138	177	25.2752
:ffffff!!bb[ddddllldddd]bb22ffffff:GGGG	chr6:31802978-31803200(+)$1	222	86	125	35.3376
:ffffff!!bb[ddddllldddd]bb22ffffff:GGGG	chr6:31802963-31803166(+)$1	203	101	140	35.3376
:ffffff!!bb[ddddllldddd]bb22ffffff:GGGG	chr6:31802966-31803178(+)$1	212	98	137	35.3376

#otherMatches

#Seq PSSM
CGGCCGCAGUGGGCAGGUGCGACUGUGCGCGGCCUCGCU	chr1:3689251-3689503(+)$1	252	138	177	25.2752
UGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC	chr6:31802978-31803200(+)$1	222	86	125	35.3376
UGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC	chr6:31802963-31803166(+)$1	203	101	140	35.3376
UGAGUGUGUCGCUGAUGCCAUCACCGCAGCGCUCUGACC	chr6:31802966-31803178(+)$1	212	98	137	35.3376

#DB
.((((((...(.((((......)))).))))))).))))	chr1:3689251-3689503(+)$1	1	138	177	25.2752
.((((((..((.((((...)))).))..)))))).))))	chr6:31802978-31803200(+)$1	1	86	125	35.3376
.((((((..((.((((...)))).))..)))))).))))	chr6:31802963-31803166(+)$1	1	101	140	35.3376
.((((((..((.((((...)))).))..)))))).))))	chr6:31802966-31803178(+)$1	1	98	137	35.3376

#PSSM
: : 0.75	[ : 0.25	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
! : 0.75	" : 0.25	
! : 0.75	" : 0.25	
b : 0.75	" : 0.25	
b : 0.75	a : 0.25	
[ : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
l : 0.75	o : 0.25	
l : 0.75	o : 0.25	
l : 0.75	o : 0.25	
d : 0.75	o : 0.25	
d : 0.75	o : 0.25	
d : 0.75	o : 0.25	
d : 1.00	
] : 0.75	d : 0.25	
b : 0.75	d : 0.25	
b : 0.75	d : 0.25	
2 : 0.75	] : 0.25	
2 : 0.75	a : 0.25	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
: : 0.75	] : 0.25	
G : 0.75	f : 0.25	
G : 0.75	f : 0.25	
G : 0.75	f : 0.25	
G : 0.75	f : 0.25	

#score	131.28815409527502
#seq	4
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_UTR_m1_run2.txt

#BEAR
eeeeettttttttttteeeee	chr4:54325367-54325629(+)$1	262	54	75	22.1056
!ddddvvvvvvvvvvvvvddd	chr12:53431092-53431306(+)$1	214	91	112	21.5209
[cccvvvvvvvvvvvvvccc]	chr8:124369810-124370066(-)$1	256	209	230	22.2203
gggggtttttttttttggggg	chr5:134094484-134094739(+)$1	255	199	220	21.6901
fffffvvvvvvvvvvvvvfff	chr19:10270630-10270838(-)$1	208	42	63	21.0197
fffffwwwwwwwwwwwwwwff	chr16:72127763-72128023(+)$1	260	14	35	19.9698
eeeevvvvvvvvvvvvveeee	chrX:65392212-65392477(+)$1	265	45	66	21.7616
[dddduuuuuuuuuuuudddd	chr14:78082782-78083057(-)$1	275	62	83	22.0734
hhhhhyyyyyyyyyyyyyyyy	chr14:56101172-56101438(+)$1	266	3	24	19.5543
eeeeettttttttttteeeee	chr2:100020126-100020378(-)$1	252	46	67	22.1056
eeeeettttttttttteeeee	chr11:70194193-70194472(+)$1	279	2	23	22.1056
eeeeeuuuuuuuuuuuueeee	chr16:84778843-84779085(+)$1	242	176	197	22.4430
bb[bbtttttttttttbb]bb	chr16:4882803-4883014(-)$1	211	100	121	20.2183
yyyyyyyyyyyyyyyyeeeee	chr19:4497860-4498082(+)$1	222	139	160	18.6164
fffffyyyyyyyyyyyyyyyy	chr19:1010680-1010890(-)$1	210	113	134	20.2512
fffffwwwwwwwwwwwwwwff	chr14:104056608-104056904(+)$1	296	229	250	19.9698
##cccuuuuuuuuuuuuccc7	chr19:10260528-10260744(-)$1	216	39	60	22.1751
[ddddtttttttttttdddd]	chr5:464314-464638(+)$1	324	181	202	21.7402
eeeeettttttttttteeeee	chr2:58468255-58468535(-)$1	280	254	275	22.1056
!cccuuuuuuuuuuuuccc]b	chr21:33975370-33975599(-)$1	229	92	113	21.8829
[ddddyyyyyyyyyyyyyyyy	chr2:197657681-197657958(-)$1	277	134	155	20.5641
bb[bbtttttttttttbb]bb	chr7:155437291-155437541(+)$1	250	88	109	20.2183
[cccvvvvvvvvvvvvvccc]	chr6:136588065-136588286(-)$1	221	150	171	22.2203
$ddddvvvvvvvvvvvvvddd	chr3:9489440-9489709(+)$1	269	231	252	21.2122
!ddddvvvvvvvvvvvvvddd	chr7:11078356-11078581(+)$1	225	185	206	21.5209
FFcccuuuuuuuuuuuuccc:	chr19:58817422-58817699(+)$1	277	143	164	21.0379
!!ccctttttttttttccc22	chr4:666143-666377(-)$1	234	120	141	22.3198
%%%bbtttttttttttbb444	chr1:32782176-32782418(+)$1	242	85	106	19.3102
iiiiitttttttttttiiiii	chr3:160130013-160130310(+)$1	297	243	264	21.7603
ccyyyyyyyyyyyyyyyyccc	chr21:38456474-38456738(+)$1	264	26	47	20.6511
[cccwwwwwwwwwwwwwwccc	chr19:10261968-10262270(-)$1	302	121	142	21.2010
fffffyyyyyyyyyyyyyyyy	chr7:65617330-65617583(+)$1	253	81	102	20.2512
ccwwwwwwwwwwwwwwccc]e	chr9:139733689-139733976(+)$1	287	70	91	19.2831
ccyyyyyyyyyyyyyyyyccc	chr1:110527533-110527787(+)$1	254	195	216	20.6511
g[ccctttttttttttccc]g	chr5:176980282-176980609(-)$1	327	19	40	22.3765
:cccvvvvvvvvvvvvvccc:	chr19:18561193-18561491(-)$1	298	91	112	20.2520
eeeevvvvvvvvvvvvveeee	chr10:93683497-93683763(+)$1	266	77	98	21.7616
eeeeeyyyyyyyyyyyyyyyy	chr2:11923882-11924180(+)$1	298	241	262	20.6594
ffffftttttttttttfffff	chr2:74689867-74690110(-)$1	243	175	196	21.1482
!!cccuuuuuuuuuuuuccc2	chr19:6749881-6750143(+)$1	262	167	188	22.8479
eeeeewwwwwwwwwwwwwwee	chr5:68463751-68464001(+)$1	250	213	234	20.6491
eeeeettttttttttteeeee	chr4:666177-666398(-)$1	221	108	129	22.1056
!cccuuuuuuuuuuuucccdd	chr17:5433798-5434040(-)$1	242	210	231	22.0901
eeeeuuuuuuuuuuuueeeee	chr3:42678260-42678518(+)$1	258	57	78	21.6758
ggabbyyyyyyyyyyyyyyyy	chr19:55663060-55663314(-)$1	254	87	108	20.2072
ddd[attttttttttta]ddd	chr2:232577097-232577303(+)$1	206	114	135	21.8827
ggggauuuuuuuuuuuua]gg	chr17:4443048-4443314(-)$1	266	140	161	22.5021
!!cccvvvvvvvvvvvvvccc	chr10:70547584-70547795(+)$1	211	174	195	22.1786
eeeevvvvvvvvvvvvveeee	chr5:6611737-6611999(-)$1	262	124	145	21.7616
bbyyyyyyyyyyyyyyyybb:	chr3:42680916-42681143(+)$1	227	143	164	18.7766
eeeeettttttttttteeeee	chr9:131832875-131833131(+)$1	256	54	75	22.1056
gggggvvvvvvvvvvvvvggg	chr12:56559105-56559421(-)$1	316	183	204	21.5222
eeeeettttttttttteeeee	chr3:47125456-47125705(-)$1	249	214	235	22.1056
ffffftttttttttttfffff	chr6:127664495-127664755(-)$1	260	211	232	21.1482
eeeeewwwwwwwwwwwwwwee	chr1:154144406-154144644(-)$1	238	47	68	20.6491
!!cccuuuuuuuuuuuuccc2	chr2:128046917-128047164(-)$1	247	144	165	22.8479
!cccvvvvvvvvvvvvvccc2	chr8:64081133-64081398(+)$1	265	109	130	22.0971
icccvvvvvvvvvvvvvccc]	chr12:12982261-12982581(+)$1	320	89	110	22.0341
!dddduuuuuuuuuuuudddd	chr11:110108203-110108457(-)$1	254	150	171	22.0880
"""auuuuuuuuuuuua333d	chr14:73569956-73570209(+)$1	253	105	126	21.7485
=====ttttttttttt=====	chr2:669390-669756(-)$1	366	56	77	22.1793

#otherMatches

#Seq PSSM
UGUGUAUUUAAACAGAACACA	chr4:54325367-54325629(+)$1	262	54	75	22.1056
GCUUCACAGAUGCACGAAGGA	chr12:53431092-53431306(+)$1	214	91	112	21.5209
GUCUAAGUAAAUGGGUAGGAG	chr8:124369810-124370066(-)$1	256	209	230	22.2203
UUCUUGGGGUCGUGAGAAGAG	chr5:134094484-134094739(+)$1	255	199	220	21.6901
UUGAUAUUUUCUGAAACAAUU	chr19:10270630-10270838(-)$1	208	42	63	21.0197
UGCUCUCUAUGGUAGCUUUGG	chr16:72127763-72128023(+)$1	260	14	35	19.9698
AUCUAUAAAGAAUACAAGGAU	chrX:65392212-65392477(+)$1	265	45	66	21.7616
AGCGGGACUUGGAGCAGCCGC	chr14:78082782-78083057(-)$1	275	62	83	22.0734
UAUGUUUUGUUUAUUUCUUAU	chr14:56101172-56101438(+)$1	266	3	24	19.5543
AGCUACCAUCUACAAUUAGCU	chr2:100020126-100020378(-)$1	252	46	67	22.1056
UACUCAUAGUAAUACAGAGUA	chr11:70194193-70194472(+)$1	279	2	23	22.1056
CUUGGACCCAACCAAACCCGA	chr16:84778843-84779085(+)$1	242	176	197	22.4430
GUGCCUGGAUCAAAGUGGAAC	chr16:4882803-4883014(-)$1	211	100	121	20.2183
GAUGGACAGGAAGGUAGAGAA	chr19:4497860-4498082(+)$1	222	139	160	18.6164
CCCGAUGACAUGAACAACAAC	chr19:1010680-1010890(-)$1	210	113	134	20.2512
GGUGUGAAAUAAAGCCCAAGC	chr14:104056608-104056904(+)$1	296	229	250	19.9698
AAGUCAAGGCCAGCAAAGACC	chr19:10260528-10260744(-)$1	216	39	60	22.1751
AUUUUGCCAAAAUUAAAAAGC	chr5:464314-464638(+)$1	324	181	202	21.7402
GGGCUAGGAGGUUAGGGGCCC	chr2:58468255-58468535(-)$1	280	254	275	22.1056
GAAUGAAAAAACCAAAAUUAU	chr21:33975370-33975599(-)$1	229	92	113	21.8829
GCUUGGAGAGAAUGAAGAUGA	chr2:197657681-197657958(-)$1	277	134	155	20.5641
GGUAGUUUGUUGUUUUCUUCC	chr7:155437291-155437541(+)$1	250	88	109	20.2183
UUGCAUUAAUUUUCGAAGCAU	chr6:136588065-136588286(-)$1	221	150	171	22.2203
AUACCCCAAAACCAAAAAGGU	chr3:9489440-9489709(+)$1	269	231	252	21.2122
AACAGAUUUUUGAUACAACUG	chr7:11078356-11078581(+)$1	225	185	206	21.5209
ccggcggagaauauaagguca	chr19:58817422-58817699(+)$1	277	143	164	21.0379
GCGGAUGAAUAAAGCUUCCUG	chr4:666143-666377(-)$1	234	120	141	22.3198
CUAGCGCCCUCACAAAGCCAA	chr1:32782176-32782418(+)$1	242	85	106	19.3102
GAUAUUACCAAUUUUUAUAUU	chr3:160130013-160130310(+)$1	297	243	264	21.7603
gggaauggagaagaagaaccc	chr21:38456474-38456738(+)$1	264	26	47	20.6511
ACCCAAAAAAAUGCACCAGGG	chr19:10261968-10262270(-)$1	302	121	142	21.2010
AGGAUUGUUUAUUUGAUUUUU	chr7:65617330-65617583(+)$1	253	81	102	20.2512
GCACAGGUCCGGAGAAGCGCA	chr9:139733689-139733976(+)$1	287	70	91	19.2831
GCCAAGGAGAUCGAGGACGCC	chr1:110527533-110527787(+)$1	254	195	216	20.6511
UGCUGAGAGCGAACAGUAGGA	chr5:176980282-176980609(-)$1	327	19	40	22.3765
AGUCCAAGAAGCACAAAGACA	chr19:18561193-18561491(-)$1	298	91	112	20.2520
CCCGGUUUGAAGUCGUGCGGG	chr10:93683497-93683763(+)$1	266	77	98	21.7616
UGUUUGAUUAGAAAGUGUGCA	chr2:11923882-11924180(+)$1	298	241	262	20.6594
AAUUCCCAUUUCCAUAGAGUU	chr2:74689867-74690110(-)$1	243	175	196	21.1482
GGCUGAAAUUGGAAGUGCAGA	chr19:6749881-6750143(+)$1	262	167	188	22.8479
GCAGAAACAUUUCAUUCUCUC	chr5:68463751-68464001(+)$1	250	213	234	20.6491
GAGUGACCCUGCGACCCACUC	chr4:666177-666398(-)$1	221	108	129	22.1056
UGCACCUCCCUCACUUUGUGG	chr17:5433798-5434040(-)$1	242	210	231	22.0901
AUGCUUAUAAAUCACCGCAUG	chr3:42678260-42678518(+)$1	258	57	78	21.6758
GCCGCAAGAAAAAGUUUGAGA	chr19:55663060-55663314(-)$1	254	87	108	20.2072
GCUGAAGAUGAUGAGGUGGGU	chr2:232577097-232577303(+)$1	206	114	135	21.8827
UUGCCAGAGACGAAGAAGCGC	chr17:4443048-4443314(-)$1	266	140	161	22.5021
GAAGAGAACCAUGAAGAGUCU	chr10:70547584-70547795(+)$1	211	174	195	22.1786
CAGGGCUGAAGUGGAUGCCUG	chr5:6611737-6611999(-)$1	262	124	145	21.7616
CCGUAGACCAAGAAAUCAGGA	chr3:42680916-42681143(+)$1	227	143	164	18.7766
GGCCUGUGGGAGAGAAAGGCU	chr9:131832875-131833131(+)$1	256	54	75	22.1056
GGCCCCUCCAGGAAGUUUGGG	chr12:56559105-56559421(-)$1	316	183	204	21.5222
CAGCUACUCCCACAACAGCUG	chr3:47125456-47125705(-)$1	249	214	235	22.1056
CACGCAAAACGGAAAAGCGUG	chr6:127664495-127664755(-)$1	260	211	232	21.1482
GUGACUAUCACUAACAGCCGU	chr1:154144406-154144644(-)$1	238	47	68	20.6491
CAGGGUAAAUCUGACAUCCCC	chr2:128046917-128047164(-)$1	247	144	165	22.8479
GCGUGCAAGCGGAAAAGACGG	chr8:64081133-64081398(+)$1	265	109	130	22.0971
UUGCAGGAGUUAAGGGAGCAU	chr12:12982261-12982581(+)$1	320	89	110	22.0341
ACGACUUGAAAAGGAGCGUCG	chr11:110108203-110108457(-)$1	254	150	171	22.0880
gaacgagaacgggauagggac	chr14:73569956-73570209(+)$1	253	105	126	21.7485
ACAUGUCUCAAACAAUUGUGU	chr2:669390-669756(-)$1	366	56	77	22.1793

#DB
(((((...........)))))	chr4:54325367-54325629(+)$1	1	54	75	22.1056
.((((.............)))	chr12:53431092-53431306(+)$1	1	91	112	21.5209
.(((.............))).	chr8:124369810-124370066(-)$1	1	209	230	22.2203
(((((...........)))))	chr5:134094484-134094739(+)$1	1	199	220	21.6901
(((((.............)))	chr19:10270630-10270838(-)$1	1	42	63	21.0197
(((((..............))	chr16:72127763-72128023(+)$1	1	14	35	19.9698
((((.............))))	chrX:65392212-65392477(+)$1	1	45	66	21.7616
.((((............))))	chr14:78082782-78083057(-)$1	1	62	83	22.0734
(((((................	chr14:56101172-56101438(+)$1	1	3	24	19.5543
(((((...........)))))	chr2:100020126-100020378(-)$1	1	46	67	22.1056
(((((...........)))))	chr11:70194193-70194472(+)$1	1	2	23	22.1056
(((((............))))	chr16:84778843-84779085(+)$1	1	176	197	22.4430
((.((...........)).))	chr16:4882803-4883014(-)$1	1	100	121	20.2183
................)))))	chr19:4497860-4498082(+)$1	1	139	160	18.6164
(((((................	chr19:1010680-1010890(-)$1	1	113	134	20.2512
(((((..............))	chr14:104056608-104056904(+)$1	1	229	250	19.9698
..(((............))).	chr19:10260528-10260744(-)$1	1	39	60	22.1751
.((((...........)))).	chr5:464314-464638(+)$1	1	181	202	21.7402
(((((...........)))))	chr2:58468255-58468535(-)$1	1	254	275	22.1056
.(((............))).)	chr21:33975370-33975599(-)$1	1	92	113	21.8829
.((((................	chr2:197657681-197657958(-)$1	1	134	155	20.5641
((.((...........)).))	chr7:155437291-155437541(+)$1	1	88	109	20.2183
.(((.............))).	chr6:136588065-136588286(-)$1	1	150	171	22.2203
.((((.............)))	chr3:9489440-9489709(+)$1	1	231	252	21.2122
.((((.............)))	chr7:11078356-11078581(+)$1	1	185	206	21.5209
(((((............))).	chr19:58817422-58817699(+)$1	1	143	164	21.0379
..(((...........)))..	chr4:666143-666377(-)$1	1	120	141	22.3198
...((...........))...	chr1:32782176-32782418(+)$1	1	85	106	19.3102
(((((...........)))))	chr3:160130013-160130310(+)$1	1	243	264	21.7603
((................)))	chr21:38456474-38456738(+)$1	1	26	47	20.6511
.(((..............)))	chr19:10261968-10262270(-)$1	1	121	142	21.2010
(((((................	chr7:65617330-65617583(+)$1	1	81	102	20.2512
((..............))).)	chr9:139733689-139733976(+)$1	1	70	91	19.2831
((................)))	chr1:110527533-110527787(+)$1	1	195	216	20.6511
(.(((...........))).)	chr5:176980282-176980609(-)$1	1	19	40	22.3765
.(((.............))).	chr19:18561193-18561491(-)$1	1	91	112	20.2520
((((.............))))	chr10:93683497-93683763(+)$1	1	77	98	21.7616
(((((................	chr2:11923882-11924180(+)$1	1	241	262	20.6594
(((((...........)))))	chr2:74689867-74690110(-)$1	1	175	196	21.1482
..(((............))).	chr19:6749881-6750143(+)$1	1	167	188	22.8479
(((((..............))	chr5:68463751-68464001(+)$1	1	213	234	20.6491
(((((...........)))))	chr4:666177-666398(-)$1	1	108	129	22.1056
.(((............)))))	chr17:5433798-5434040(-)$1	1	210	231	22.0901
((((............)))))	chr3:42678260-42678518(+)$1	1	57	78	21.6758
(((((................	chr19:55663060-55663314(-)$1	1	87	108	20.2072
(((.(...........).)))	chr2:232577097-232577303(+)$1	1	114	135	21.8827
(((((............).))	chr17:4443048-4443314(-)$1	1	140	161	22.5021
..(((.............)))	chr10:70547584-70547795(+)$1	1	174	195	22.1786
((((.............))))	chr5:6611737-6611999(-)$1	1	124	145	21.7616
((................)).	chr3:42680916-42681143(+)$1	1	143	164	18.7766
(((((...........)))))	chr9:131832875-131833131(+)$1	1	54	75	22.1056
(((((.............)))	chr12:56559105-56559421(-)$1	1	183	204	21.5222
(((((...........)))))	chr3:47125456-47125705(-)$1	1	214	235	22.1056
(((((...........)))))	chr6:127664495-127664755(-)$1	1	211	232	21.1482
(((((..............))	chr1:154144406-154144644(-)$1	1	47	68	20.6491
..(((............))).	chr2:128046917-128047164(-)$1	1	144	165	22.8479
.(((.............))).	chr8:64081133-64081398(+)$1	1	109	130	22.0971
((((.............))).	chr12:12982261-12982581(+)$1	1	89	110	22.0341
.((((............))))	chr11:110108203-110108457(-)$1	1	150	171	22.0880
...(............)...)	chr14:73569956-73570209(+)$1	1	105	126	21.7485
(((((...........)))))	chr2:669390-669756(-)$1	1	56	77	22.1793

#PSSM
e : 0.24	! : 0.16	f : 0.11	[ : 0.09	g : 0.08	b : 0.04	c : 0.04	i : 0.03	h : 0.01	y : 0.01	# : 0.01	$ : 0.01	F : 0.01	% : 0.01	: : 0.01	d : 0.01	" : 0.01	= : 0.01	
e : 0.24	c : 0.18	d : 0.13	f : 0.11	g : 0.06	! : 0.06	b : 0.04	h : 0.01	y : 0.01	# : 0.01	F : 0.01	% : 0.01	i : 0.01	[ : 0.01	" : 0.01	= : 0.01	
e : 0.24	c : 0.24	d : 0.13	f : 0.11	y : 0.06	g : 0.04	[ : 0.03	h : 0.01	% : 0.01	i : 0.01	w : 0.01	a : 0.01	" : 0.01	= : 0.01	
e : 0.24	c : 0.24	d : 0.11	f : 0.11	b : 0.06	y : 0.06	g : 0.04	h : 0.01	i : 0.01	w : 0.01	[ : 0.01	a : 0.01	= : 0.01	
e : 0.18	v : 0.13	d : 0.11	f : 0.11	c : 0.11	b : 0.06	y : 0.06	u : 0.06	g : 0.03	w : 0.03	a : 0.03	h : 0.01	i : 0.01	= : 0.01	
t : 0.31	v : 0.22	u : 0.19	y : 0.16	w : 0.09	
t : 0.31	v : 0.22	u : 0.19	y : 0.16	w : 0.09	
t : 0.31	v : 0.22	u : 0.19	y : 0.16	w : 0.09	
t : 0.31	v : 0.22	u : 0.19	y : 0.16	w : 0.09	
t : 0.31	v : 0.22	u : 0.19	y : 0.16	w : 0.09	
t : 0.31	v : 0.22	u : 0.19	y : 0.16	w : 0.09	
t : 0.31	v : 0.22	u : 0.19	y : 0.16	w : 0.09	
t : 0.31	v : 0.22	u : 0.19	y : 0.16	w : 0.09	
t : 0.31	v : 0.22	u : 0.19	y : 0.16	w : 0.09	
t : 0.31	v : 0.22	u : 0.19	y : 0.16	w : 0.09	
t : 0.31	v : 0.22	u : 0.19	y : 0.16	w : 0.09	
v : 0.22	e : 0.14	y : 0.14	u : 0.13	w : 0.08	c : 0.08	b : 0.04	f : 0.03	a : 0.03	g : 0.01	d : 0.01	i : 0.01	= : 0.01	
c : 0.22	e : 0.21	y : 0.14	v : 0.09	w : 0.08	d : 0.04	b : 0.04	f : 0.03	g : 0.01	i : 0.01	] : 0.01	a : 0.01	3 : 0.01	= : 0.01	
c : 0.29	e : 0.21	d : 0.11	y : 0.09	w : 0.06	f : 0.04	] : 0.04	g : 0.03	4 : 0.01	i : 0.01	b : 0.01	3 : 0.01	= : 0.01	
e : 0.24	c : 0.21	d : 0.13	y : 0.09	f : 0.08	g : 0.04	b : 0.04	] : 0.04	2 : 0.01	4 : 0.01	i : 0.01	3 : 0.01	= : 0.01	
e : 0.26	d : 0.13	y : 0.09	f : 0.08	] : 0.06	g : 0.06	2 : 0.06	c : 0.06	b : 0.04	: : 0.04	7 : 0.01	4 : 0.01	i : 0.01	= : 0.01	

#score	1301.13392262459
#seq	61
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF977MKB_IGF2BP2_UTR_m1_run2.txt

#BEAR
iiiiiiivvvvvvvvvvvvviiiiiiii	chr11:102269165-102269434(-)$1	269	91	119	21.8976
ggggggwwwwwwwwwwwwwwgggggggd	chr20:31437338-31437592(+)$1	254	153	181	21.9581
gggggggwwwwwwwwwwwwwwggggggg	chr12:53862474-53862704(+)$1	230	63	91	22.3004
ccc[cccuuuuuuuuuuuuccc]ccc]e	chr22:22890360-22890577(-)$1	217	68	96	21.6584
b[cccbbvvvvvvvvvvvvvbb]cccbb	chr5:32229074-32229308(-)$1	234	65	93	21.5576
ff[ddddyyyyyyyyyyyyyyyydddd]	chr12:113826786-113827046(+)$1	260	149	177	20.9006
fffffcccuuuuuuuuuuuuccc]ffff	chr6:37142110-37142361(+)$1	251	146	174	20.6288
"""ccc^^^^^^^^^^^^^^^^^^ccc4	chr19:39220564-39220809(+)$1	245	89	117	20.9178
^^^^^^^^^^^^^^^^^^^^^a]eeeee	chr16:2569636-2569894(+)$1	258	85	113	22.2180
+ffffffwwwwwwwwwwwwwwffffffd	chr19:48245124-48245425(+)$1	301	56	84	21.1616
fffddddwwwwwwwwwwwwwwdddd333	chr10:5500139-5500385(+)$1	246	25	53	22.3588
^^^^^^^^^^^^^^^^^^^^bb]ggggg	chr17:26900231-26900498(-)$1	267	215	243	21.2420
f[eeeeeyyyyyyyyyyyyyyyyeeeee	chr19:49843574-49843916(+)$1	342	302	330	21.4837
::ddddwwwwwwwwwwwwwwddddccc[	chr2:171822427-171822681(+)$1	254	42	70	20.1852
^^^^^^^^^^^^^^^^^^^^eeeee]a]	chr4:77956134-77956390(+)$1	256	48	76	21.4648
cc[dddduuuuuuuuuuuudddd]ccc]	chr11:3848139-3848392(-)$1	253	55	83	21.0782
"""cccxxxxxxxxxxxxxxxccc22ff	chr19:56128153-56128418(+)$1	265	105	133	20.7123
gggggggwwwwwwwwwwwwwwggggggg	chr21:46270904-46271163(-)$1	259	7	35	22.3004
d!!ddddwwwwwwwwwwwwwwdddd22d	chr6:34213427-34213663(+)$1	236	203	231	22.5267
!ffffffwwwwwwwwwwwwwwffffff4	chr12:57106745-57106973(-)$1	228	120	148	21.6471
eeeeeeewwwwwwwwwwwwwweeeee]e	chr12:104743554-104743805(+)$1	251	34	62	22.8081
bb^^^^^^^^^^^^^^^^^^bb]eeeee	chr19:6440988-6441223(-)$1	235	105	133	20.6112
dddddddvvvvvvvvvvvvvdddd]ddd	chr6:4891894-4892181(+)$1	287	169	197	21.4902
d!!ddddxxxxxxxxxxxxxxxdddd22	chr12:120878243-120878511(+)$1	268	26	54	20.0837
c!!eeeeeuuuuuuuuuuuueeeee22c	chr3:52559124-52559334(-)$1	210	2	30	21.6988
"""cccxxxxxxxxxxxxxxxccc333d	chr16:23584981-23585234(+)$1	253	87	115	21.3262
===eeeeeuuuuuuuuuuuueeeee:::	chr8:11695847-11696136(+)$1	289	212	240	18.8336
^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr11:46694362-46694658(+)$1	296	8	36	21.3524
::cccbbvvvvvvvvvvvvvbb]cccbb	chr22:39414334-39414584(+)$1	250	111	139	20.0142
eeeeebbvvvvvvvvvvvvvbb]eeeee	chr17:48459067-48459312(-)$1	245	132	160	22.2715
eeee[bbvvvvvvvvvvvvvbbeeeee:	chr1:67724158-67724440(+)$1	282	189	217	21.3194
eeee[bbvvvvvvvvvvvvvbb]eeeee	chr12:56387884-56388142(+)$1	258	48	76	22.2556
cc[cccxxxxxxxxxxxxxxxccc]ccc	chr4:1019928-1020225(+)$1	297	243	271	20.4824
^^^^^^^^^^^^^^^^^^^^^ggggggg	chr14:81658914-81659187(-)$1	273	244	272	21.6882
bbeeeeewwwwwwwwwwwwwweeeee]b	chr8:124221793-124222059(+)$1	266	160	188	22.3993
e[eeeeevvvvvvvvvvvvveeeee]ee	chr11:64534278-64534572(-)$1	294	24	52	22.7784
^^^^^^^^^^^^^^^^^^^^^a]eeeee	chr16:2569607-2569836(+)$1	229	114	142	22.2180
"""ddddvvvvvvvvvvvvvddddeeee	chr14:90871685-90871954(+)$1	269	156	184	23.2506
ddd[cccvvvvvvvvvvvvvcccdddd:	chrX:153576934-153577223(-)$1	289	143	171	21.1847
^^^^^^^^^^^^^^^^^^^^^ggggggg	chr1:28177172-28177458(+)$1	286	51	79	21.6882
e!!dddduuuuuuuuuuuuddddeeeee	chr16:56717849-56718097(+)$1	248	39	67	21.7088
cc[ddddxxxxxxxxxxxxxxxdddd]c	chr12:56665857-56666132(-)$1	275	163	191	20.0966
g[eeeeevvvvvvvvvvvvveeeee444	chr19:4360387-4360630(-)$1	243	17	45	22.8070
^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr19:36640977-36641199(+)$1	222	27	55	22.1201
"""ddddtttttttttttdddd333ddd	chr19:3976220-3976430(-)$1	210	34	62	18.2536
e!!ddddvvvvvvvvvvvvvdddd22ee	chr6:36199287-36199588(+)$1	301	132	160	22.3821
"ccc[cccuuuuuuuuuuuuccc]ccc2	chr13:25886918-25887130(+)$1	212	27	55	21.6330
^^^^^^^^^^^^^^^^^^^^^^ffffff	chr1:84971712-84971972(-)$1	260	72	100	21.2425
bbeeeeewwwwwwwwwwwwwweeeee]b	chr19:41172786-41173090(-)$1	304	119	147	22.3993
ccc[ccctttttttttttccc]ccc333	chr7:2770021-2770297(-)$1	276	175	203	18.5349
^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr12:57118161-57118368(-)$1	207	161	189	21.3524
eeecccwwwwwwwwwwwwwwccc]eeee	chr16:67580400-67580674(+)$1	274	80	108	22.5901
:ggggggguuuuuuuuuuuugggggggG	chr3:9879640-9879907(-)$1	267	227	255	19.4329
[a[ddddyyyyyyyyyyyyyyyydddd]	chr6:37141832-37142051(+)$1	219	150	178	21.3909
=========ttttttttttt========	chr17:18112038-18112369(+)$1	331	245	273	18.3781
^^^^^^^^^^^^^^^^^^^^========	chr12:54069738-54069967(-)$1	229	98	126	21.4321
##eeeeeyyyyyyyyyyyyyyyyeeeee	chr19:6441512-6441746(-)$1	234	74	102	21.9754
^^^^^^^^^^^^^^^^^^^^bbadddd]	chr12:111893730-111894035(-)$1	305	24	52	21.0801
========uuuuuuuuuuuu========	chr8:54975807-54976035(-)$1	228	168	196	21.6471
^^^^^^^^^^^^^^^^^^^^ggggggge	chr1:207510571-207510788(+)$1	217	144	172	21.1590
^^^^^^^^^^^^^^^^^^^^^^eeeee]	chr17:6920570-6920900(+)$1	330	72	100	22.2311
"""eeeeettttttttttteeeee4444	chr1:156711901-156712123(-)$1	222	30	58	19.1226
^^^^^^^^^^^^^^^^^^^^dddd22dd	chr21:36164661-36165008(-)$1	347	256	284	20.5824
b[eeeeexxxxxxxxxxxxxxxeeeee]	chr6:30568739-30568989(-)$1	250	71	99	20.6116
c"""cccvvvvvvvvvvvvvccc]ccc2	chr22:36863096-36863393(-)$1	297	25	53	23.0781
''cccbbvvvvvvvvvvvvvbb]ccc55	chrX:64961408-64961643(+)$1	235	87	115	20.1755
[ffffffwwwwwwwwwwwwwwffffff]	chr16:66965928-66966208(-)$1	280	174	202	21.5592
^^^^^^^^^^^^^^^^^^^^eeeeeddd	chr11:64000075-64000346(+)$1	271	181	209	21.2389
^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr6:108533067-108533349(-)$1	282	96	124	22.1201

#otherMatches

#Seq PSSM
CUAUCUUUUUUUUUUUGGCUGGGGUGGG	chr11:102269165-102269434(-)$1	269	91	119	21.8976
UGCUGCUUAGAGUUGGAAGUGCAGCAGG	chr20:31437338-31437592(+)$1	254	153	181	21.9581
GCUUGCUCUCUUCUGUCUUUUAGCAGGU	chr12:53862474-53862704(+)$1	230	63	91	22.3004
CCCUGUUUCAUGCCUAACUAGCUGGGUG	chr22:22890360-22890577(-)$1	217	68	96	21.6584
CCAGCCACCACCCUCUUUUCUGUGCUGC	chr5:32229074-32229308(-)$1	234	65	93	21.5576
GCAGUCCCCUCGUCUCCCUUUCUGGGCA	chr12:113826786-113827046(+)$1	260	149	177	20.9006
AUAGGACUAGCACCAUUUUAAGUCCCUG	chr6:37142110-37142361(+)$1	251	146	174	20.6288
CCCCUGAACCGCACCCCAUCCCACCAGC	chr19:39220564-39220809(+)$1	245	89	117	20.9178
CGCCCUCAUCCUCUCCACAAAGUAGACC	chr16:2569636-2569894(+)$1	258	85	113	22.2180
UAGCAGAUAAACAGACCCCCUUCUGCUC	chr19:48245124-48245425(+)$1	301	56	84	21.1616
UUUAGUCAUAAGAUGGAAAAAGACUGGU	chr10:5500139-5500385(+)$1	246	25	53	22.3588
AGCUCCCACAAUUUUCCCAUGAUGAGGU	chr17:26900231-26900498(-)$1	267	215	243	21.2420
UGUCAGAACACAAACAAACAAACUUUGA	chr19:49843574-49843916(+)$1	342	302	330	21.4837
CCUGCCACAACUACUGCAAAGGCAGACG	chr2:171822427-171822681(+)$1	254	42	70	20.1852
CAUUAUAUUUUAUUUUUACCCUUGCAUG	chr4:77956134-77956390(+)$1	256	48	76	21.4648
AGAAGGUGAAUGUGCCCUAACCUGCUCC	chr11:3848139-3848392(-)$1	253	55	83	21.0782
CCAUCCUUCAGAACUUCACACGGACUGG	chr19:56128153-56128418(+)$1	265	105	133	20.7123
GGGCAGAACCCUGCGUUUCUCUCUGUCC	chr21:46270904-46271163(-)$1	259	7	35	22.3004
ACAGUUGUGUUGUUUUUUGUUCAAUGUU	chr6:34213427-34213663(+)$1	236	203	231	22.5267
AGGAAGAGGUAUACUAGGAAAUCUUUCA	chr12:57106745-57106973(-)$1	228	120	148	21.6471
AGUGGUCAAAAUACAUUUCUGGGCCACC	chr12:104743554-104743805(+)$1	251	34	62	22.8081
UCCCAAGCCUUCACCCACCAGAUUCUGG	chr19:6440988-6441223(-)$1	235	105	133	20.6112
UGUGAGGAAUACAUCCACGACUUCAACA	chr6:4891894-4892181(+)$1	287	169	197	21.4902
GAGAUGGUAACCAUACUCUAUUCCAUAA	chr12:120878243-120878511(+)$1	268	26	54	20.0837
GCAUUCCCCUCCUCUCCCUAGGGAAACC	chr3:52559124-52559334(-)$1	210	2	30	21.6988
UCUUACUCUUACUUUAACCAUGUGCCUG	chr16:23584981-23585234(+)$1	253	87	115	21.3262
AGUACCUGACCACUCUCUCCCAGGUAAC	chr8:11695847-11696136(+)$1	289	212	240	18.8336
UCUUCAUUGUCCCCUUUACUUCCUGCUA	chr11:46694362-46694658(+)$1	296	8	36	21.3524
ACGGGCCUCCCCUCCACCCUGGACCCGC	chr22:39414334-39414584(+)$1	250	111	139	20.0142
ACAAGGAUCACACUGUCCAUUCUCUUGU	chr17:48459067-48459312(-)$1	245	132	160	22.2715
AUAUUCCUGAUCUCAACACUGGAUAUAA	chr1:67724158-67724440(+)$1	282	189	217	21.3194
AGGGGCAGCCUUAGUUCCCAUGGCCCUG	chr12:56387884-56388142(+)$1	258	48	76	22.2556
AGGGACUUUCCCUGCUCCACCGUCACUC	chr4:1019928-1020225(+)$1	297	243	271	20.4824
gaagaugaagaagaagacuaugaugaug	chr14:81658914-81659187(-)$1	273	244	272	21.6882
GGCAGGAACAAGCCCCCCUACUCCUGAC	chr8:124221793-124222059(+)$1	266	160	188	22.3993
UGAUGCCGCCACCACCUAUGGGCAUGAU	chr11:64534278-64534572(-)$1	294	24	52	22.7784
CGCCCUCAUCCUCUCCACAAAGUAGACC	chr16:2569607-2569836(+)$1	229	114	142	22.2180
UUCAGCACAACCAUCAACAUUGCUGUUC	chr14:90871685-90871954(+)$1	269	156	184	23.2506
CUGCGCUCACCUGCCUCCCCAGCCAGCC	chrX:153576934-153577223(-)$1	289	143	171	21.1847
CCUCCUUUCUUUCUCCCACUUUCUAGGA	chr1:28177172-28177458(+)$1	286	51	79	21.6882
UGUGGGCUGUGCCAAGUGUGCCCAGGGC	chr16:56717849-56718097(+)$1	248	39	67	21.7088
UCCGGAAUGACCAGCAUGAUAUUUUCAG	chr12:56665857-56666132(-)$1	275	163	191	20.0966
UCUAUCGCCCAAUGCAAAAUCGAUGAAA	chr19:4360387-4360630(-)$1	243	17	45	22.8070
CUCCGUAACCUCUCCCCUGUACCUGUGC	chr19:36640977-36641199(+)$1	222	27	55	22.1201
CACUUGAUGCCGUUUCUUUCAAUAUUUA	chr19:3976220-3976430(-)$1	210	34	62	18.2536
CCUGCCACCAAACAUCUUCCUGGCCUGC	chr6:36199287-36199588(+)$1	301	132	160	22.3821
AACCAGUAUAAUAGAACACUUACAGGUA	chr13:25886918-25887130(+)$1	212	27	55	21.6330
GAACCGGAAACUUAGAGACAAAGUUCGG	chr1:84971712-84971972(-)$1	260	72	100	21.2425
ACACCAGUGCCCACCCCAAAUCUGGUCG	chr19:41172786-41173090(-)$1	304	119	147	22.3993
AGGUGUGGAUUCACCUUACGCCCCUACA	chr7:2770021-2770297(-)$1	276	175	203	18.5349
AUUAAAAUUAACCCUAAAGCCAUUUGGU	chr12:57118161-57118368(-)$1	207	161	189	21.3524
AAUGAAAAUCUAAUAUAUUCUUCUGUUG	chr16:67580400-67580674(+)$1	274	80	108	22.5901
CCCCUCACACAcacuggaaagugagggu	chr3:9879640-9879907(-)$1	267	227	255	19.4329
ACAGGAACAACAUUUACAACUCAUUCCA	chr6:37141832-37142051(+)$1	219	150	178	21.3909
GCAGGGGCUUAAACAGUGCCAGCCCCUG	chr17:18112038-18112369(+)$1	331	245	273	18.3781
CGCCCCUCUCUGUCUUCUCUGCAGUGGG	chr12:54069738-54069967(-)$1	229	98	126	21.4321
AAGAUUAUCCACACCCCAGCCCUUAAUC	chr19:6441512-6441746(-)$1	234	74	102	21.9754
AGCAGUCAGCCAUUUACCACGCGGGGCU	chr12:111893730-111894035(-)$1	305	24	52	21.0801
UGAAUAAGAACAUUAUAUUACUUAUUUA	chr8:54975807-54976035(-)$1	228	168	196	21.6471
AUGAAACAACCCCAAAUAAAGGAAGUGG	chr1:207510571-207510788(+)$1	217	144	172	21.1590
CUUCCACCUCUGACCUCUCACUGUUCAU	chr17:6920570-6920900(+)$1	330	72	100	22.2311
ACAGAGAGAAAUAAGUGCCCUCUCCCAC	chr1:156711901-156712123(-)$1	222	30	58	19.1226
ACGCGCUACCACACCUACCUGCCGCCGC	chr21:36164661-36165008(-)$1	347	256	284	20.5824
GCACUUAAGAAAUCAUCCCAGCUAAGUU	chr6:30568739-30568989(-)$1	250	71	99	20.6116
GAUAAAGAACUUAGUCAUCCCUUCCACC	chr22:36863096-36863393(-)$1	297	25	53	23.0781
CUGGCCACCACCCCCCACUCUGUGCCUG	chrX:64961408-64961643(+)$1	235	87	115	20.1755
UUUUCUUGAAUCACUCACAAUGAGAAAC	chr16:66965928-66966208(-)$1	280	174	202	21.5592
ACACAAACAAAACAAACAAGUGCUGGGG	chr11:64000075-64000346(+)$1	271	181	209	21.2389
UGCCUUCAGUAUACUAACACUCAUAUGC	chr6:108533067-108533349(-)$1	282	96	124	22.1201

#DB
(((((((.............))))))))	chr11:102269165-102269434(-)$1	1	91	119	21.8976
((((((..............)))))))(	chr20:31437338-31437592(+)$1	1	153	181	21.9581
(((((((..............)))))))	chr12:53862474-53862704(+)$1	1	63	91	22.3004
(((.(((............))).))).)	chr22:22890360-22890577(-)$1	1	68	96	21.6584
(.(((((.............)).)))))	chr5:32229074-32229308(-)$1	1	65	93	21.5576
((.((((................)))).	chr12:113826786-113827046(+)$1	1	149	177	20.9006
((((((((............))).))))	chr6:37142110-37142361(+)$1	1	146	174	20.6288
...(((..................))).	chr19:39220564-39220809(+)$1	1	89	117	20.9178
.....................).)))))	chr16:2569636-2569894(+)$1	1	85	113	22.2180
.((((((..............)))))))	chr19:48245124-48245425(+)$1	1	56	84	21.1616
(((((((..............))))...	chr10:5500139-5500385(+)$1	1	25	53	22.3588
....................)).)))))	chr17:26900231-26900498(-)$1	1	215	243	21.2420
(.(((((................)))))	chr19:49843574-49843916(+)$1	1	302	330	21.4837
..((((..............))))(((.	chr2:171822427-171822681(+)$1	1	42	70	20.1852
....................))))).).	chr4:77956134-77956390(+)$1	1	48	76	21.4648
((.((((............)))).))).	chr11:3848139-3848392(-)$1	1	55	83	21.0782
...(((...............)))..))	chr19:56128153-56128418(+)$1	1	105	133	20.7123
(((((((..............)))))))	chr21:46270904-46271163(-)$1	1	7	35	22.3004
(..((((..............))))..)	chr6:34213427-34213663(+)$1	1	203	231	22.5267
.((((((..............)))))).	chr12:57106745-57106973(-)$1	1	120	148	21.6471
(((((((..............))))).)	chr12:104743554-104743805(+)$1	1	34	62	22.8081
((..................)).)))))	chr19:6440988-6441223(-)$1	1	105	133	20.6112
(((((((.............)))).)))	chr6:4891894-4892181(+)$1	1	169	197	21.4902
(..((((...............))))..	chr12:120878243-120878511(+)$1	1	26	54	20.0837
(..(((((............)))))..)	chr3:52559124-52559334(-)$1	1	2	30	21.6988
...(((...............)))...)	chr16:23584981-23585234(+)$1	1	87	115	21.3262
)))(((((............)))))...	chr8:11695847-11696136(+)$1	1	212	240	18.8336
........................))))	chr11:46694362-46694658(+)$1	1	8	36	21.3524
..(((((.............)).)))((	chr22:39414334-39414584(+)$1	1	111	139	20.0142
(((((((.............)).)))))	chr17:48459067-48459312(-)$1	1	132	160	22.2715
((((.((.............))))))).	chr1:67724158-67724440(+)$1	1	189	217	21.3194
((((.((.............)).)))))	chr12:56387884-56388142(+)$1	1	48	76	22.2556
((.(((...............))).)))	chr4:1019928-1020225(+)$1	1	243	271	20.4824
.....................)))))))	chr14:81658914-81659187(-)$1	1	244	272	21.6882
(((((((..............))))).)	chr8:124221793-124222059(+)$1	1	160	188	22.3993
(.(((((.............))))).))	chr11:64534278-64534572(-)$1	1	24	52	22.7784
.....................).)))))	chr16:2569607-2569836(+)$1	1	114	142	22.2180
...((((.............))))))))	chr14:90871685-90871954(+)$1	1	156	184	23.2506
(((.(((.............))))))).	chrX:153576934-153577223(-)$1	1	143	171	21.1847
.....................)))))))	chr1:28177172-28177458(+)$1	1	51	79	21.6882
(..((((............)))))))))	chr16:56717849-56718097(+)$1	1	39	67	21.7088
((.((((...............)))).)	chr12:56665857-56666132(-)$1	1	163	191	20.0966
(.(((((.............)))))...	chr19:4360387-4360630(-)$1	1	17	45	22.8070
.......................)))))	chr19:36640977-36641199(+)$1	1	27	55	22.1201
...((((...........))))...)))	chr19:3976220-3976430(-)$1	1	34	62	18.2536
(..((((.............))))..))	chr6:36199287-36199588(+)$1	1	132	160	22.3821
.(((.(((............))).))).	chr13:25886918-25887130(+)$1	1	27	55	21.6330
......................))))))	chr1:84971712-84971972(-)$1	1	72	100	21.2425
(((((((..............))))).)	chr19:41172786-41173090(-)$1	1	119	147	22.3993
(((.(((...........))).)))...	chr7:2770021-2770297(-)$1	1	175	203	18.5349
........................))))	chr12:57118161-57118368(-)$1	1	161	189	21.3524
((((((..............))).))))	chr16:67580400-67580674(+)$1	1	80	108	22.5901
.(((((((............))))))))	chr3:9879640-9879907(-)$1	1	227	255	19.4329
.(.((((................)))).	chr6:37141832-37142051(+)$1	1	150	178	21.3909
(((((((((...........))))))))	chr17:18112038-18112369(+)$1	1	245	273	18.3781
....................))))))))	chr12:54069738-54069967(-)$1	1	98	126	21.4321
..(((((................)))))	chr19:6441512-6441746(-)$1	1	74	102	21.9754
....................))))))).	chr12:111893730-111894035(-)$1	1	24	52	21.0801
((((((((............))))))))	chr8:54975807-54976035(-)$1	1	168	196	21.6471
....................)))))))(	chr1:207510571-207510788(+)$1	1	144	172	21.1590
......................))))).	chr17:6920570-6920900(+)$1	1	72	100	22.2311
...(((((...........)))))....	chr1:156711901-156712123(-)$1	1	30	58	19.1226
....................))))..))	chr21:36164661-36165008(-)$1	1	256	284	20.5824
(.(((((...............))))).	chr6:30568739-30568989(-)$1	1	71	99	20.6116
(...(((.............))).))).	chr22:36863096-36863393(-)$1	1	25	53	23.0781
..(((((.............)).)))..	chrX:64961408-64961643(+)$1	1	87	115	20.1755
.((((((..............)))))).	chr16:66965928-66966208(-)$1	1	174	202	21.5592
....................)))))(((	chr11:64000075-64000346(+)$1	1	181	209	21.2389
.......................)))))	chr6:108533067-108533349(-)$1	1	96	124	22.1201

#PSSM
^ : 0.24	e : 0.11	c : 0.10	" : 0.10	b : 0.07	g : 0.05	f : 0.05	d : 0.05	: : 0.04	= : 0.04	[ : 0.02	i : 0.01	+ : 0.01	! : 0.01	# : 0.01	' : 0.01	
^ : 0.24	" : 0.10	c : 0.08	f : 0.08	[ : 0.07	! : 0.07	e : 0.07	g : 0.05	b : 0.04	= : 0.04	: : 0.02	d : 0.02	i : 0.01	a : 0.01	# : 0.01	' : 0.01	
^ : 0.26	e : 0.17	" : 0.10	c : 0.08	[ : 0.07	f : 0.07	! : 0.07	g : 0.05	d : 0.04	= : 0.04	i : 0.01	
^ : 0.26	e : 0.20	d : 0.18	c : 0.13	g : 0.05	f : 0.05	[ : 0.04	= : 0.02	i : 0.01	" : 0.01	
^ : 0.26	d : 0.18	c : 0.17	e : 0.17	g : 0.05	f : 0.05	[ : 0.04	= : 0.02	i : 0.01	
^ : 0.26	d : 0.18	c : 0.15	e : 0.15	b : 0.08	g : 0.05	f : 0.04	= : 0.02	i : 0.01	
^ : 0.27	d : 0.17	e : 0.15	c : 0.08	b : 0.08	w : 0.04	g : 0.04	f : 0.04	x : 0.04	= : 0.02	i : 0.01	
^ : 0.27	v : 0.20	w : 0.18	x : 0.08	y : 0.05	u : 0.04	e : 0.04	c : 0.02	t : 0.02	= : 0.02	g : 0.01	
^ : 0.27	v : 0.20	w : 0.18	u : 0.13	x : 0.08	y : 0.05	t : 0.04	= : 0.01	
^ : 0.27	v : 0.20	w : 0.18	u : 0.13	x : 0.08	y : 0.05	t : 0.05	
^ : 0.27	v : 0.20	w : 0.18	u : 0.13	x : 0.08	y : 0.05	t : 0.05	
^ : 0.27	v : 0.20	w : 0.18	u : 0.13	x : 0.08	y : 0.05	t : 0.05	
^ : 0.27	v : 0.20	w : 0.18	u : 0.13	x : 0.08	y : 0.05	t : 0.05	
^ : 0.27	v : 0.20	w : 0.18	u : 0.13	x : 0.08	y : 0.05	t : 0.05	
^ : 0.27	v : 0.20	w : 0.18	u : 0.13	x : 0.08	y : 0.05	t : 0.05	
^ : 0.27	v : 0.20	w : 0.18	u : 0.13	x : 0.08	y : 0.05	t : 0.05	
^ : 0.27	v : 0.20	w : 0.18	u : 0.13	x : 0.08	y : 0.05	t : 0.05	
^ : 0.27	v : 0.20	w : 0.18	u : 0.13	x : 0.08	y : 0.05	t : 0.05	
^ : 0.27	v : 0.20	w : 0.18	u : 0.13	x : 0.08	y : 0.05	t : 0.02	d : 0.01	c : 0.01	
^ : 0.27	v : 0.20	w : 0.18	u : 0.08	x : 0.08	y : 0.05	d : 0.04	c : 0.02	t : 0.01	e : 0.01	
^ : 0.15	w : 0.14	b : 0.13	d : 0.11	c : 0.10	e : 0.10	x : 0.08	y : 0.05	g : 0.04	= : 0.04	i : 0.01	
d : 0.14	e : 0.14	c : 0.13	b : 0.13	g : 0.10	^ : 0.10	y : 0.05	f : 0.04	x : 0.04	= : 0.04	a : 0.02	i : 0.01	] : 0.01	
e : 0.18	d : 0.15	] : 0.14	c : 0.13	g : 0.10	^ : 0.07	y : 0.05	f : 0.05	= : 0.04	i : 0.01	3 : 0.01	a : 0.01	
e : 0.33	d : 0.18	g : 0.11	c : 0.11	] : 0.07	f : 0.05	^ : 0.04	= : 0.04	i : 0.01	3 : 0.01	
e : 0.34	c : 0.14	d : 0.14	g : 0.11	f : 0.07	2 : 0.04	= : 0.04	] : 0.02	3 : 0.02	i : 0.01	4 : 0.01	
e : 0.26	d : 0.15	c : 0.14	g : 0.11	f : 0.07	2 : 0.07	3 : 0.04	= : 0.04	] : 0.02	4 : 0.02	i : 0.01	: : 0.01	
e : 0.24	d : 0.14	g : 0.11	f : 0.08	c : 0.08	] : 0.07	3 : 0.04	2 : 0.04	= : 0.04	b : 0.02	4 : 0.02	i : 0.01	a : 0.01	: : 0.01	5 : 0.01	
e : 0.24	d : 0.14	] : 0.11	g : 0.07	b : 0.05	4 : 0.05	f : 0.04	2 : 0.04	c : 0.04	: : 0.04	= : 0.04	3 : 0.02	i : 0.01	[ : 0.01	G : 0.01	5 : 0.01	

#score	1472.2918598921258
#seq	69
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF233ZXV_DHX30_transcript_m3_run2.txt

#BEAR
gggggooooooggggggg	chrM:2552-2761(+)$1	209	136	154	11.7596
[ddddoooooodddd]bb	chrM:1253-1459(+)$1	206	17	35	12.3189
b[cccooooooccc22bb	chrM:14212-14422(-)$1	210	61	79	10.8215
eeeeeooooooeeeee]b	chr8:77557720-77557954(-)$1	234	62	80	11.2395
gggggooooooggggggg	chrM:2538-2745(+)$1	207	150	168	11.7596
fffffooooooffffff2	chr12:48416393-48416608(+)$1	215	81	99	10.7085
fffffooooooffffff:	chr2:108865675-108865904(+)$1	229	76	94	10.2229
gggggooooooggggggg	chrM:2605-2823(+)$1	218	83	101	11.7596
b[cccooooooccc22bb	chrM:14223-14445(-)$1	222	84	102	10.8215
fffffooooooffffffe	chrM:8079-8292(+)$1	213	104	122	10.8017
[ddddoooooodddd]bb	chrM:1248-1450(+)$1	202	22	40	12.3189
$$cccooooooccc333d	chr1:567124-567364(+)$1	240	98	116	10.8236
[ddddoooooodddd]ee	chr8:100507998-100508253(+)$1	255	90	108	12.0189
[ddddoooooodddd333	chrM:12702-12925(+)$1	223	74	92	12.3979
!!cccooooooccc]bbc	chrM:596-803(+)$1	207	103	121	11.1152
gggggooooooggggggg	chrM:2574-2778(+)$1	204	114	132	11.7596
fffffooooooffffffe	chrM:8024-8253(+)$1	229	159	177	10.8017
gggggooooooggggggg	chrM:2603-2805(+)$1	202	85	103	11.7596
[ddddooooooddddbbc	chr1:20811982-20812235(-)$1	253	42	60	11.6453
[ddddoooooodddd]ee	chr7:63565915-63566161(+)$1	246	9	27	12.0189
[bb[aooooooa]bb]dd	chrM:14374-14601(-)$1	227	205	223	9.6366
b[cccooooooccc22bb	chrM:14245-14492(-)$1	247	131	149	10.8215
eeeeeooooooeeeeeHH	chrM:12063-12272(+)$1	209	178	196	10.4675
hhhhhoooooohhhhhhh	chr20:832497-832722(+)$1	225	166	184	9.1718
[ddddoooooodddd333	chrM:12671-12885(+)$1	214	105	123	12.3979
gggggooooooggggggg	chrM:2528-2733(+)$1	205	160	178	11.7596
!!cccooooooccc]bbc	chrM:586-794(+)$1	208	113	131	11.1152
gggggooooooggggggg	chrM:2661-2870(+)$1	209	27	45	11.7596
gggggooooooggggggg	chrM:2591-2794(+)$1	203	97	115	11.7596
fffffooooooffffffe	chrM:8053-8270(+)$1	217	130	148	10.8017
fffffooooooffffffI	chr1:77436808-77437047(+)$1	239	10	28	9.8890
ee[bboooooobb]eeee	chr16:3421875-3422132(-)$1	257	224	242	9.4704
gggggooooooggggggg	chrM:2594-2803(+)$1	209	94	112	11.7596
[ddddoooooodddd]bb	chrM:1166-1374(+)$1	208	104	122	12.3189
eeeeeooooooeeeeeHH	chrM:12072-12302(+)$1	230	169	187	10.4675
[ddddoooooodddd]bb	chrM:1259-1464(+)$1	205	11	29	12.3189
fffffooooooffffff=	chr6:157100659-157100905(+)$1	246	33	51	10.9517
[ddddoooooodddd]bb	chrM:1264-1468(+)$1	204	6	24	12.3189
[ddddoooooodddd]bb	chrM:1163-1366(+)$1	203	107	125	12.3189
gggggooooooggggggg	chrM:2545-2752(+)$1	207	143	161	11.7596
[ddddoooooodddd333	chrM:12685-12891(+)$1	206	91	109	12.3979
eeeeeooooooeeeeeHH	chrM:12181-12407(+)$1	226	60	78	10.4675
[ddddoooooodddd]bb	chrM:1184-1389(+)$1	205	86	104	12.3189
gggggooooooggggggg	chrM:2533-2738(+)$1	205	155	173	11.7596
eeeeeooooooeeeee]b	chr1:1374853-1375099(+)$1	246	133	151	11.2395
fffffooooooffffffe	chrM:8070-8275(+)$1	205	113	131	10.8017
eeeeeooooooeeeee]d	chr20:62526656-62526971(+)$1	315	63	81	11.0318
[ddddoooooodddd]bb	chrM:1174-1379(+)$1	205	96	114	12.3189
[ddddoooooodddd333	chrM:12725-12951(+)$1	226	51	69	12.3979
fffffooooooffffffe	chrM:8075-8279(+)$1	204	108	126	10.8017
eeeeeooooooeeeeeHH	chrM:12113-12344(+)$1	231	128	146	10.4675
gggggooooooggggggg	chrM:2652-2861(+)$1	209	36	54	11.7596
eeeeeooooooeeeeeHH	chrM:12176-12381(+)$1	205	65	83	10.4675
[ddddoooooodddd333	chrM:12751-12970(+)$1	219	25	43	12.3979
[ddddoooooodddd333	chrM:12691-12902(+)$1	211	85	103	12.3979
gddddoooooodddd888	chrM:1442-1655(+)$1	213	169	187	10.6271

#otherMatches

#Seq PSSM
cccgugaagaggcgggca	chrM:2552-2761(+)$1	209	136	154	11.7596
UUCAGCAAACCCUGAUGA	chrM:1253-1459(+)$1	206	17	35	12.3189
GGGUGAAAGAGUAUGAUG	chrM:14212-14422(-)$1	210	61	79	10.8215
cuaugcauuuauauagag	chr8:77557720-77557954(-)$1	234	62	80	11.2395
cccgugaagaggcgggca	chrM:2538-2745(+)$1	207	150	168	11.7596
UAGUAUACAUCUGCUAUU	chr12:48416393-48416608(+)$1	215	81	99	10.7085
aauauauuaaaauauuac	chr2:108865675-108865904(+)$1	229	76	94	10.2229
cccgugaagaggcgggca	chrM:2605-2823(+)$1	218	83	101	11.7596
GGGUGAAAGAGUAUGAUG	chrM:14223-14445(-)$1	222	84	102	10.8215
UGUGGAGCAAACCACAGU	chrM:8079-8292(+)$1	213	104	122	10.8017
UUCAGCAAACCCUGAUGA	chrM:1248-1450(+)$1	202	22	40	12.3189
UUGUAACUUACUACUCCG	chr1:567124-567364(+)$1	240	98	116	10.8236
UUUAAAAUUGAUUGAUGA	chr8:100507998-100508253(+)$1	255	90	108	12.0189
UAGGAAUUAUAUCCUUCU	chrM:12702-12925(+)$1	223	74	92	12.3979
CAAGCAUCCCCGUUCCAG	chrM:596-803(+)$1	207	103	121	11.1152
cccgugaagaggcgggca	chrM:2574-2778(+)$1	204	114	132	11.7596
UGUGGAGCAAACCACAGU	chrM:8024-8253(+)$1	229	159	177	10.8017
cccgugaagaggcgggca	chrM:2603-2805(+)$1	202	85	103	11.7596
cggccccgcccggcccgg	chr1:20811982-20812235(-)$1	253	42	60	11.6453
GGUAUAUGCUAAUAUGAU	chr7:63565915-63566161(+)$1	246	9	27	12.0189
AGUGGGGUUAGCGAUGGA	chrM:14374-14601(-)$1	227	205	223	9.6366
GGGUGAAAGAGUAUGAUG	chrM:14245-14492(-)$1	247	131	149	10.8215
CAUGUCUAACAACAUGGC	chrM:12063-12272(+)$1	209	178	196	10.4675
AAAUAAAGGGGUGUUUGG	chr20:832497-832722(+)$1	225	166	184	9.1718
UAGGAAUUAUAUCCUUCU	chrM:12671-12885(+)$1	214	105	123	12.3979
cccgugaagaggcgggca	chrM:2528-2733(+)$1	205	160	178	11.7596
CAAGCAUCCCCGUUCCAG	chrM:586-794(+)$1	208	113	131	11.1152
cccgugaagaggcgggca	chrM:2661-2870(+)$1	209	27	45	11.7596
cccgugaagaggcgggca	chrM:2591-2794(+)$1	203	97	115	11.7596
UGUGGAGCAAACCACAGU	chrM:8053-8270(+)$1	217	130	148	10.8017
guuuagauuuguagauag	chr1:77436808-77437047(+)$1	239	10	28	9.8890
GUAUGAAUGGCCACACAA	chr16:3421875-3422132(-)$1	257	224	242	9.4704
cccgugaagaggcgggca	chrM:2594-2803(+)$1	209	94	112	11.7596
UUCAGCAAACCCUGAUGA	chrM:1166-1374(+)$1	208	104	122	12.3189
CAUGUCUAACAACAUGGC	chrM:12072-12302(+)$1	230	169	187	10.4675
UUCAGCAAACCCUGAUGA	chrM:1259-1464(+)$1	205	11	29	12.3189
CCCGUCUUcccgcggggg	chr6:157100659-157100905(+)$1	246	33	51	10.9517
UUCAGCAAACCCUGAUGA	chrM:1264-1468(+)$1	204	6	24	12.3189
UUCAGCAAACCCUGAUGA	chrM:1163-1366(+)$1	203	107	125	12.3189
cccgugaagaggcgggca	chrM:2545-2752(+)$1	207	143	161	11.7596
UAGGAAUUAUAUCCUUCU	chrM:12685-12891(+)$1	206	91	109	12.3979
CAUGUCUAACAACAUGGC	chrM:12181-12407(+)$1	226	60	78	10.4675
UUCAGCAAACCCUGAUGA	chrM:1184-1389(+)$1	205	86	104	12.3189
cccgugaagaggcgggca	chrM:2533-2738(+)$1	205	155	173	11.7596
CUGCACCACGCUGCAGGG	chr1:1374853-1375099(+)$1	246	133	151	11.2395
UGUGGAGCAAACCACAGU	chrM:8070-8275(+)$1	205	113	131	10.8017
gcccgggcaggcgggcgg	chr20:62526656-62526971(+)$1	315	63	81	11.0318
UUCAGCAAACCCUGAUGA	chrM:1174-1379(+)$1	205	96	114	12.3189
UAGGAAUUAUAUCCUUCU	chrM:12725-12951(+)$1	226	51	69	12.3979
UGUGGAGCAAACCACAGU	chrM:8075-8279(+)$1	204	108	126	10.8017
CAUGUCUAACAACAUGGC	chrM:12113-12344(+)$1	231	128	146	10.4675
cccgugaagaggcgggca	chrM:2652-2861(+)$1	209	36	54	11.7596
CAUGUCUAACAACAUGGC	chrM:12176-12381(+)$1	205	65	83	10.4675
UAGGAAUUAUAUCCUUCU	chrM:12751-12970(+)$1	219	25	43	12.3979
UAGGAAUUAUAUCCUUCU	chrM:12691-12902(+)$1	211	85	103	12.3979
AGCUUAACACAAAGCACC	chrM:1442-1655(+)$1	213	169	187	10.6271

#DB
(((((......)))))))	chrM:2552-2761(+)$1	1	136	154	11.7596
.((((......)))).))	chrM:1253-1459(+)$1	1	17	35	12.3189
(.(((......)))..))	chrM:14212-14422(-)$1	1	61	79	10.8215
(((((......))))).)	chr8:77557720-77557954(-)$1	1	62	80	11.2395
(((((......)))))))	chrM:2538-2745(+)$1	1	150	168	11.7596
(((((......)))))).	chr12:48416393-48416608(+)$1	1	81	99	10.7085
(((((......)))))).	chr2:108865675-108865904(+)$1	1	76	94	10.2229
(((((......)))))))	chrM:2605-2823(+)$1	1	83	101	11.7596
(.(((......)))..))	chrM:14223-14445(-)$1	1	84	102	10.8215
(((((......)))))))	chrM:8079-8292(+)$1	1	104	122	10.8017
.((((......)))).))	chrM:1248-1450(+)$1	1	22	40	12.3189
..(((......)))...)	chr1:567124-567364(+)$1	1	98	116	10.8236
.((((......)))).))	chr8:100507998-100508253(+)$1	1	90	108	12.0189
.((((......))))...	chrM:12702-12925(+)$1	1	74	92	12.3979
..(((......))).)))	chrM:596-803(+)$1	1	103	121	11.1152
(((((......)))))))	chrM:2574-2778(+)$1	1	114	132	11.7596
(((((......)))))))	chrM:8024-8253(+)$1	1	159	177	10.8017
(((((......)))))))	chrM:2603-2805(+)$1	1	85	103	11.7596
.((((......)))))))	chr1:20811982-20812235(-)$1	1	42	60	11.6453
.((((......)))).))	chr7:63565915-63566161(+)$1	1	9	27	12.0189
.((.(......).)).))	chrM:14374-14601(-)$1	1	205	223	9.6366
(.(((......)))..))	chrM:14245-14492(-)$1	1	131	149	10.8215
(((((......)))))))	chrM:12063-12272(+)$1	1	178	196	10.4675
(((((......)))))))	chr20:832497-832722(+)$1	1	166	184	9.1718
.((((......))))...	chrM:12671-12885(+)$1	1	105	123	12.3979
(((((......)))))))	chrM:2528-2733(+)$1	1	160	178	11.7596
..(((......))).)))	chrM:586-794(+)$1	1	113	131	11.1152
(((((......)))))))	chrM:2661-2870(+)$1	1	27	45	11.7596
(((((......)))))))	chrM:2591-2794(+)$1	1	97	115	11.7596
(((((......)))))))	chrM:8053-8270(+)$1	1	130	148	10.8017
(((((......))))))(	chr1:77436808-77437047(+)$1	1	10	28	9.8890
((.((......)).))))	chr16:3421875-3422132(-)$1	1	224	242	9.4704
(((((......)))))))	chrM:2594-2803(+)$1	1	94	112	11.7596
.((((......)))).))	chrM:1166-1374(+)$1	1	104	122	12.3189
(((((......)))))))	chrM:12072-12302(+)$1	1	169	187	10.4675
.((((......)))).))	chrM:1259-1464(+)$1	1	11	29	12.3189
(((((......))))))(	chr6:157100659-157100905(+)$1	1	33	51	10.9517
.((((......)))).))	chrM:1264-1468(+)$1	1	6	24	12.3189
.((((......)))).))	chrM:1163-1366(+)$1	1	107	125	12.3189
(((((......)))))))	chrM:2545-2752(+)$1	1	143	161	11.7596
.((((......))))...	chrM:12685-12891(+)$1	1	91	109	12.3979
(((((......)))))))	chrM:12181-12407(+)$1	1	60	78	10.4675
.((((......)))).))	chrM:1184-1389(+)$1	1	86	104	12.3189
(((((......)))))))	chrM:2533-2738(+)$1	1	155	173	11.7596
(((((......))))).)	chr1:1374853-1375099(+)$1	1	133	151	11.2395
(((((......)))))))	chrM:8070-8275(+)$1	1	113	131	10.8017
(((((......))))).)	chr20:62526656-62526971(+)$1	1	63	81	11.0318
.((((......)))).))	chrM:1174-1379(+)$1	1	96	114	12.3189
.((((......))))...	chrM:12725-12951(+)$1	1	51	69	12.3979
(((((......)))))))	chrM:8075-8279(+)$1	1	108	126	10.8017
(((((......)))))))	chrM:12113-12344(+)$1	1	128	146	10.4675
(((((......)))))))	chrM:2652-2861(+)$1	1	36	54	11.7596
(((((......)))))))	chrM:12176-12381(+)$1	1	65	83	10.4675
.((((......))))...	chrM:12751-12970(+)$1	1	25	43	12.3979
.((((......))))...	chrM:12691-12902(+)$1	1	85	103	12.3979
(((((......))))...	chrM:1442-1655(+)$1	1	169	187	10.6271

#PSSM
[ : 0.32	g : 0.23	e : 0.16	f : 0.16	b : 0.05	! : 0.03	$ : 0.01	h : 0.01	
d : 0.32	g : 0.21	e : 0.16	f : 0.16	[ : 0.05	! : 0.03	$ : 0.01	b : 0.01	h : 0.01	
d : 0.32	g : 0.21	f : 0.16	e : 0.14	c : 0.10	b : 0.01	h : 0.01	[ : 0.01	
d : 0.32	g : 0.21	f : 0.16	e : 0.14	c : 0.10	[ : 0.01	h : 0.01	b : 0.01	
d : 0.32	g : 0.21	f : 0.16	e : 0.14	c : 0.10	a : 0.01	h : 0.01	b : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.32	g : 0.21	f : 0.16	e : 0.14	c : 0.10	a : 0.01	h : 0.01	b : 0.01	
d : 0.32	g : 0.21	f : 0.16	e : 0.14	c : 0.10	] : 0.01	h : 0.01	b : 0.01	
d : 0.32	g : 0.21	f : 0.16	e : 0.14	c : 0.10	b : 0.01	h : 0.01	] : 0.01	
d : 0.32	g : 0.21	e : 0.16	f : 0.16	2 : 0.05	] : 0.03	3 : 0.01	b : 0.01	h : 0.01	
g : 0.21	] : 0.19	e : 0.16	f : 0.16	3 : 0.12	2 : 0.05	b : 0.05	h : 0.01	8 : 0.01	
b : 0.24	g : 0.21	f : 0.16	3 : 0.12	H : 0.08	] : 0.05	e : 0.05	d : 0.01	h : 0.01	8 : 0.01	
b : 0.23	g : 0.21	e : 0.14	3 : 0.10	H : 0.08	d : 0.05	c : 0.05	2 : 0.01	: : 0.01	h : 0.01	I : 0.01	= : 0.01	8 : 0.01	

#score	635.7922854492205
#seq	56
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_UTR_m2_run2.txt

#BEAR
gggggg!!bbuuuuuuuuuuuubb22ggg	chr19:42751849-42752130(-)$1	281	240	269	24.5817
e$$$$$eeeeettttttttttteeeee33	chr3:128210939-128211178(+)$1	239	171	200	22.3673
dd[cccbbbbuuuuuuuuuuuubb]bb]c	chr8:145650510-145650754(-)$1	244	120	149	23.1556
dccca[ddddvvvvvvvvvvvvvdddd]a	chr6:33383629-33383934(+)$1	305	69	98	24.4500
c!!eeeeewwwwwwwwwwwwwweeeee]c	chr17:76108959-76109225(-)$1	266	154	183	23.2917
b!!gggggggvvvvvvvvvvvvvgggggg	chr2:85772114-85772332(+)$1	218	116	145	25.9764
===========ttttttttttt=======	chr1:150547231-150547489(-)$1	258	161	190	25.0725
fffff!!ccctttttttttttccc22fff	chr20:31172459-31172781(-)$1	322	217	246	23.2862
eeeeecccwwwwwwwwwwwwwwccc6666	chr11:47738627-47738887(-)$1	260	126	155	21.2227
ggggggg[avvvvvvvvvvvvva]ggggg	chr19:1474138-1474391(-)$1	253	135	164	25.9536
!!hhhhhhhhvvvvvvvvvvvvvhhhhhh	chr7:100171562-100171820(-)$1	258	13	42	23.3981
ggggggyyyyyyyyyyyyyyyyggggggg	chr11:62382708-62383000(-)$1	292	206	235	21.4851
fffff[ddddtttttttttttdddd]fff	chr2:20821927-20822186(-)$1	259	22	51	22.5674
ddd[ffffffuuuuuuuuuuuuffffff]	chr6:26123453-26123701(-)$1	248	25	54	24.2561
hhhhhh!!bbuuuuuuuuuuuubb22hhh	chr2:220403259-220403545(+)$1	286	182	211	22.5932
==========ttttttttttt========	chr12:125398628-125398884(-)$1	256	203	232	25.2540
ccc[ffffffuuuuuuuuuuuuffffff]	chr19:17389828-17390122(+)$1	294	33	62	24.4784
gg"""ddddvvvvvvvvvvvvvdddd333	chr16:242827-243088(-)$1	261	216	245	24.8723
=====[cccvvvvvvvvvvvvvccc]===	chr2:97525529-97525798(-)$1	269	176	205	26.5438
e"""bb[cccuuuuuuuuuuuuccc]bb4	chr17:80850926-80851219(+)$1	293	229	258	24.7299
DD:ffffffvvvvvvvvvvvvvffffff:	chr11:612016-612303(+)$1	287	3	32	20.5971
===========ttttttttttt=======	chr15:34671213-34671496(-)$1	283	164	193	25.0725
::gggggggvvvvvvvvvvvvvggggggg	chr6:27101214-27101478(+)$1	264	127	156	24.0812
ee[ccc[cccuuuuuuuuuuuuccc]ccc	chr22:20099911-20100163(-)$1	252	145	174	25.3669
"eeeeeddddtttttttttttdddd22ee	chr16:31202645-31202847(+)$1	202	96	125	22.1877
!!hhhhhhhhvvvvvvvvvvvvvhhhhhh	chr7:100171695-100171981(-)$1	286	174	203	23.3981
==="""dddduuuuuuuuuuuudddd333	chr17:73823401-73823770(-)$1	369	202	231	24.8842
ddbb!!dddduuuuuuuuuuuudddd22b	chr16:239117-239441(-)$1	324	207	236	23.1466
===========ttttttttttt=======	chr2:47710157-47710437(+)$1	280	173	202	25.0725
IIa[fffffftttttttttttffffff]a	chr19:47774932-47775178(+)$1	246	199	228	21.1346
[ccc[eeeeeuuuuuuuuuuuueeeeecc	chr19:45650191-45650433(+)$1	242	45	74	24.1550
$$$$a[ddddvvvvvvvvvvvvvdddd]a	chr4:1982783-1983035(+)$1	252	183	212	24.0776
eegggggggvvvvvvvvvvvvvggggggg	chr2:85772007-85772294(+)$1	287	116	145	25.8515
b!!gggggggtttttttttttggggggg2	chr22:20099784-20100024(-)$1	240	105	134	24.3768
eeeee[ddddvvvvvvvvvvvvvdddd]e	chr11:67053775-67054027(+)$1	252	130	159	24.0826
ddd[ffffffuuuuuuuuuuuuffffff]	chr6:26123501-26123745(-)$1	244	69	98	24.2561
iiiiiiiiiwwwwwwwwwwwwwwiiiiii	chr17:5346265-5346537(-)$1	272	186	215	24.9570
==========ttttttttttt========	chr7:71876957-71877244(-)$1	287	230	259	25.2540
ggggggg[bbtttttttttttbb]ggggg	chr16:31202298-31202532(+)$1	234	171	200	23.9598
!!hhhhhhhhvvvvvvvvvvvvvhhhhhh	chr7:100171653-100171895(-)$1	242	88	117	23.3981
!ccc"""cccuuuuuuuuuuuuccccccd	chr11:252679-252983(+)$1	304	153	182	24.9162
:eeeee[ccctttttttttttccceeeee	chr9:139566817-139567081(+)$1	264	79	108	22.6352
ee[gggggggxxxxxxxxxxxxxxxgggg	chr1:1322410-1322637(-)$1	227	180	209	17.7347
)))))))ccctttttttttttcccdddd]	chr3:193856050-193856313(+)$1	263	29	58	20.3802
dddd:fffffftttttttttttffffff:	chr2:74689769-74690015(-)$1	246	74	103	20.4953
cc[eeeeewwwwwwwwwwwwwweeeee33	chr19:18544940-18545222(+)$1	282	60	89	23.2524
=======bbbbuuuuuuuuuuuubb]bb2	chrX:151121738-151121990(-)$1	252	148	177	22.4805
========wwwwwwwwwwwwww=======	chr17:79993818-79994098(-)$1	280	14	43	24.9417
+eeeee[cccuuuuuuuuuuuuccceeee	chr22:20100027-20100296(-)$1	269	187	216	24.0011
iiiiiiiiiwwwwwwwwwwwwwwiiiiii	chr17:5346188-5346438(-)$1	250	87	116	24.9570
dd!!eeeeevvvvvvvvvvvvveeeee]d	chr1:43829243-43829513(-)$1	270	193	222	24.6361
eegggggggvvvvvvvvvvvvvggggggg	chr2:85772094-85772314(+)$1	220	29	58	25.8515
=======bbbbuuuuuuuuuuuubb]bb2	chrX:151121790-151122033(-)$1	243	191	220	22.4805
[a####cccvvvvvvvvvvvvvccc22af	chr14:39650982-39651221(+)$1	239	71	100	25.1270
dd[a[a[cccvvvvvvvvvvvvvccc22a	chr19:56185509-56185773(+)$1	264	153	182	25.3263
ddd:ffffffvvvvvvvvvvvvvffffff	chr3:9519600-9519878(+)$1	278	159	188	23.0557
'''gggggggtttttttttttgggggggb	chr22:50357255-50357498(+)$1	243	203	232	22.4711
ggggffffffuuuuuuuuuuuuffffff]	chr17:8062574-8062837(-)$1	263	155	184	24.5769
e"""bb[ddddtttttttttttdddd]bb	chr16:31202251-31202498(+)$1	247	63	92	22.3450

#otherMatches

#Seq PSSM
GGGGGUGCCCUGAAACCAAACUGGAAGCC	chr19:42751849-42752130(-)$1	281	240	269	24.5817
CCAGAACGCCGUCUACGCCUACCGGCGGC	chr3:128210939-128211178(+)$1	239	171	200	22.3673
UGGAGCCGAGCUACAAGCCCCACUACGUG	chr8:145650510-145650754(-)$1	244	120	149	23.1556
CGCUCAGCACCCCCUUCUCCCCUGUGCCG	chr6:33383629-33383934(+)$1	305	69	98	24.4500
CUUGGGCAUCCCCAAUGAACUCUGCCCUG	chr17:76108959-76109225(-)$1	266	154	183	23.2917
CUUGGCUGGUGUGGUACAGAGAAGCCAGC	chr2:85772114-85772332(+)$1	218	116	145	25.9764
GCAAAUCCUCCAAAAGGGAAAGGGAGGAU	chr1:150547231-150547489(-)$1	258	161	190	25.0725
GGUGACACGCAGCAAAUACCAGCGGAUCG	chr20:31172459-31172781(-)$1	322	217	246	23.2862
AUGCUGCCUUUAUUCUCAAACUGGCAAAC	chr11:47738627-47738887(-)$1	260	126	155	21.2227
UUUUCAUCCUAAAUAGCAACUUGAGUGGA	chr19:1474138-1474391(-)$1	253	135	164	25.9536
CGCGCUCUCAGAGAAGCACGUGGUGAGGG	chr7:100171562-100171820(-)$1	258	13	42	23.3981
CUCCAGAAUAAAGAAUCUCAACCUGGAGG	chr11:62382708-62383000(-)$1	292	206	235	21.4851
AAGUGUGGGUCCCGCACCCCCACCUUCAC	chr2:20821927-20822186(-)$1	259	22	51	22.5674
UGUGGCCAGACGCCAAAUUUUAUUUGGCG	chr6:26123453-26123701(-)$1	248	25	54	24.2561
CAGUCUGAUUUUAUAAAGUGCUGACGAGA	chr2:220403259-220403545(+)$1	286	182	211	22.5932
CCCGUUCUGUUGGCUUAUAAUGCAGGGUG	chr12:125398628-125398884(-)$1	256	203	232	25.2540
UCCCUGUACAUCUGCACCUUCUUGUGCAA	chr19:17389828-17390122(+)$1	294	33	62	24.4784
CUCGGUCCAUUCCACUGUUGCUUGGAAUA	chr16:242827-243088(-)$1	261	216	245	24.8723
GGGUGGGCCUGCUGUGGACAAUGGCAUAC	chr2:97525529-97525798(-)$1	269	176	205	26.5438
GGAAAUGUUUGAGUUGUUUGAAAAAGAUG	chr17:80850926-80851219(+)$1	293	229	258	24.7299
GUUUCCAUUCUAAUUUAUCAAAAAUGGAU	chr11:612016-612303(+)$1	287	3	32	20.5971
AGUGGCAUUAUUGACUGCUGAUGUGAUGC	chr15:34671213-34671496(-)$1	283	164	193	25.0725
AUUCCAUGUGAAAGAAAGUGAGACAUGGA	chr6:27101214-27101478(+)$1	264	127	156	24.0812
CUUGCUGGCCAGGAUAUUCAGAGGUAGGC	chr22:20099911-20100163(-)$1	252	145	174	25.3669
AGGGAGAGGCCGUAUUAAUUAGCCUGGCU	chr16:31202645-31202847(+)$1	202	96	125	22.1877
CGCGCUCUCAGAGAAGCACGUGGUGAGGG	chr7:100171695-100171981(-)$1	286	174	203	23.3981
GGUGGUGGCCAUUACUAGAGGGGGCCUGG	chr17:73823401-73823770(-)$1	369	202	231	24.8842
CACGGAGGUCAGAAGAGAAGGAGGCCGGC	chr16:239117-239441(-)$1	324	207	236	23.1466
AUUUUAUAAAUAAAAUCAUGUAGUUUGUG	chr2:47710157-47710437(+)$1	280	173	202	25.0725
CCGUCUCUGGAAUGUCCACUCCCAGAGCC	chr19:47774932-47775178(+)$1	246	199	228	21.1346
GUGGUGGUUGAGAUGCACAGAACAGCCCC	chr19:45650191-45650433(+)$1	242	45	74	24.1550
ACUUUGAAUGUCUCUACAAUACCCGUUGA	chr4:1982783-1983035(+)$1	252	183	212	24.0776
GGCCAAGGUGUCCUACAGAAAAACCUUGG	chr2:85772007-85772294(+)$1	287	116	145	25.8515
GAAGACAGGUGGGUUCCUGUAGCCUGUUG	chr22:20099784-20100024(-)$1	240	105	134	24.3768
UGGGUUGGCGCACCCUCCCCUCCCGUCUA	chr11:67053775-67054027(+)$1	252	130	159	24.0826
UGUGGCCAGACGCCAAAUUUUAUUUGGCG	chr6:26123501-26123745(-)$1	244	69	98	24.2561
UUUCUAUGAUAUUUUUUCCUUCUUCGUAG	chr17:5346265-5346537(-)$1	272	186	215	24.9570
GGCUCAGCUGCAUGCAGUUCCCAGCUGGG	chr7:71876957-71877244(-)$1	287	230	259	25.2540
AACAGAGGCCAUAGGAUAACAGGGUUUUG	chr16:31202298-31202532(+)$1	234	171	200	23.9598
CGCGCUCUCAGAGAAGCACGUGGUGAGGG	chr7:100171653-100171895(-)$1	242	88	117	23.3981
AGGUGAUACGGGAGAGAAAGAACGUGCCA	chr11:252679-252983(+)$1	304	153	182	24.9162
CCCCAGACCCUGGCAUGGGAUGGGCUGGG	chr9:139566817-139567081(+)$1	264	79	108	22.6352
GGACCUUGGUGGAUUUGGAAAUGGAACUG	chr1:1322410-1322637(-)$1	227	180	209	17.7347
CUCUAAACAGGAACUUGAAUACUGGGAGA	chr3:193856050-193856313(+)$1	263	29	58	20.3802
CCUGAAAAUUCCCAUUUCCAUAGAGUUUG	chr2:74689769-74690015(-)$1	246	74	103	20.4953
CGCGCUGCCCCCUCCUCUCUCCGCAGUAC	chr19:18544940-18545222(+)$1	282	60	89	23.2524
CCCAGAAUGGCGACCUCUCUUUAGCUCAA	chrX:151121738-151121990(-)$1	252	148	177	22.4805
CACUUGGCAAGUUUGCUGGUGAGUCAGGU	chr17:79993818-79994098(-)$1	280	14	43	24.9417
ACUGGGACCUUCCCCUCAUCCUAGGCCCA	chr22:20100027-20100296(-)$1	269	187	216	24.0011
UUUCUAUGAUAUUUUUUCCUUCUUCGUAG	chr17:5346188-5346438(-)$1	250	87	116	24.9570
CCCCCUCCCUGCCUUAAAACUUGGGAGAG	chr1:43829243-43829513(-)$1	270	193	222	24.6361
GGCCAAGGUGUCCUACAGAAAAACCUUGG	chr2:85772094-85772314(+)$1	220	29	58	25.8515
CCCAGAAUGGCGACCUCUCUUUAGCUCAA	chrX:151121790-151122033(-)$1	243	191	220	22.4805
ACAAAAGGCGUUAAUGGAAGAAGCCAGGC	chr14:39650982-39651221(+)$1	239	71	100	25.1270
ACACGCACCCACACAGACACAGAGGGAAG	chr19:56185509-56185773(+)$1	264	153	182	25.3263
UGUAACAUUUGAACUUUCACAAGAGAUGU	chr3:9519600-9519878(+)$1	278	159	188	23.0557
AAGGGGAGUGGGUGACCCUGACACUUCCA	chr22:50357255-50357498(+)$1	243	203	232	22.4711
CCCCCCACACUUCUGGUUUUCUGUGUGGA	chr17:8062574-8062837(-)$1	263	155	184	24.5769
CAGAGGAGGCUAUGAUCGAGGCGGCUACC	chr16:31202251-31202498(+)$1	247	63	92	22.3450

#DB
((((((..((............))..)))	chr19:42751849-42752130(-)$1	1	240	269	24.5817
(.....(((((...........)))))..	chr3:128210939-128211178(+)$1	1	171	200	22.3673
((.(((((((............)).)).)	chr8:145650510-145650754(-)$1	1	120	149	23.1556
(((((.((((.............)))).)	chr6:33383629-33383934(+)$1	1	69	98	24.4500
(..(((((..............))))).)	chr17:76108959-76109225(-)$1	1	154	183	23.2917
(..(((((((.............))))))	chr2:85772114-85772332(+)$1	1	116	145	25.9764
(((((((((((...........)))))))	chr1:150547231-150547489(-)$1	1	161	190	25.0725
(((((..(((...........)))..)))	chr20:31172459-31172781(-)$1	1	217	246	23.2862
((((((((..............)))....	chr11:47738627-47738887(-)$1	1	126	155	21.2227
(((((((.(.............).)))))	chr19:1474138-1474391(-)$1	1	135	164	25.9536
..((((((((.............))))))	chr7:100171562-100171820(-)$1	1	13	42	23.3981
((((((................)))))))	chr11:62382708-62383000(-)$1	1	206	235	21.4851
(((((.((((...........)))).)))	chr2:20821927-20822186(-)$1	1	22	51	22.5674
(((.((((((............)))))).	chr6:26123453-26123701(-)$1	1	25	54	24.2561
((((((..((............))..)))	chr2:220403259-220403545(+)$1	1	182	211	22.5932
((((((((((...........))))))))	chr12:125398628-125398884(-)$1	1	203	232	25.2540
(((.((((((............)))))).	chr19:17389828-17390122(+)$1	1	33	62	24.4784
((...((((.............))))...	chr16:242827-243088(-)$1	1	216	245	24.8723
(((((.(((.............))).)))	chr2:97525529-97525798(-)$1	1	176	205	26.5438
(...((.(((............))).)).	chr17:80850926-80851219(+)$1	1	229	258	24.7299
((.((((((.............)))))).	chr11:612016-612303(+)$1	1	3	32	20.5971
(((((((((((...........)))))))	chr15:34671213-34671496(-)$1	1	164	193	25.0725
..(((((((.............)))))))	chr6:27101214-27101478(+)$1	1	127	156	24.0812
((.(((.(((............))).)))	chr22:20099911-20100163(-)$1	1	145	174	25.3669
.(((((((((...........))))..))	chr16:31202645-31202847(+)$1	1	96	125	22.1877
..((((((((.............))))))	chr7:100171695-100171981(-)$1	1	174	203	23.3981
(((...((((............))))...	chr17:73823401-73823770(-)$1	1	202	231	24.8842
((((..((((............))))..)	chr16:239117-239441(-)$1	1	207	236	23.1466
(((((((((((...........)))))))	chr2:47710157-47710437(+)$1	1	173	202	25.0725
))(.((((((...........)))))).)	chr19:47774932-47775178(+)$1	1	199	228	21.1346
.(((.(((((............)))))))	chr19:45650191-45650433(+)$1	1	45	74	24.1550
....(.((((.............)))).)	chr4:1982783-1983035(+)$1	1	183	212	24.0776
(((((((((.............)))))))	chr2:85772007-85772294(+)$1	1	116	145	25.8515
(..(((((((...........))))))).	chr22:20099784-20100024(-)$1	1	105	134	24.3768
(((((.((((.............)))).)	chr11:67053775-67054027(+)$1	1	130	159	24.0826
(((.((((((............)))))).	chr6:26123501-26123745(-)$1	1	69	98	24.2561
(((((((((..............))))))	chr17:5346265-5346537(-)$1	1	186	215	24.9570
((((((((((...........))))))))	chr7:71876957-71877244(-)$1	1	230	259	25.2540
(((((((.((...........)).)))))	chr16:31202298-31202532(+)$1	1	171	200	23.9598
..((((((((.............))))))	chr7:100171653-100171895(-)$1	1	88	117	23.3981
.(((...(((............)))))))	chr11:252679-252983(+)$1	1	153	182	24.9162
.(((((.(((...........))))))))	chr9:139566817-139567081(+)$1	1	79	108	22.6352
((.(((((((...............))))	chr1:1322410-1322637(-)$1	1	180	209	17.7347
.......(((...........))))))).	chr3:193856050-193856313(+)$1	1	29	58	20.3802
)))).((((((...........)))))).	chr2:74689769-74690015(-)$1	1	74	103	20.4953
((.(((((..............)))))..	chr19:18544940-18545222(+)$1	1	60	89	23.2524
(((((((((((............)).)).	chrX:151121738-151121990(-)$1	1	148	177	22.4805
((((((((..............)))))))	chr17:79993818-79994098(-)$1	1	14	43	24.9417
.(((((.(((............)))))))	chr22:20100027-20100296(-)$1	1	187	216	24.0011
(((((((((..............))))))	chr17:5346188-5346438(-)$1	1	87	116	24.9570
((..(((((.............))))).)	chr1:43829243-43829513(-)$1	1	193	222	24.6361
(((((((((.............)))))))	chr2:85772094-85772314(+)$1	1	29	58	25.8515
(((((((((((............)).)).	chrX:151121790-151122033(-)$1	1	191	220	22.4805
.(....(((.............)))..))	chr14:39650982-39651221(+)$1	1	71	100	25.1270
((.(.(.(((.............)))..)	chr19:56185509-56185773(+)$1	1	153	182	25.3263
))).((((((.............))))))	chr3:9519600-9519878(+)$1	1	159	188	23.0557
...(((((((...........))))))))	chr22:50357255-50357498(+)$1	1	203	232	22.4711
((((((((((............)))))).	chr17:8062574-8062837(-)$1	1	155	184	24.5769
(...((.((((...........)))).))	chr16:31202251-31202498(+)$1	1	63	92	22.3450

#PSSM
= : 0.16	e : 0.15	d : 0.15	g : 0.10	! : 0.06	c : 0.05	b : 0.03	f : 0.03	: : 0.03	[ : 0.03	i : 0.03	h : 0.01	D : 0.01	" : 0.01	I : 0.01	$ : 0.01	) : 0.01	+ : 0.01	' : 0.01	
= : 0.16	e : 0.15	d : 0.13	g : 0.10	! : 0.10	c : 0.08	$ : 0.03	f : 0.03	" : 0.03	i : 0.03	h : 0.01	D : 0.01	: : 0.01	I : 0.01	) : 0.01	a : 0.01	' : 0.01	
= : 0.16	g : 0.13	[ : 0.08	e : 0.08	c : 0.06	! : 0.06	h : 0.06	d : 0.06	" : 0.05	$ : 0.03	f : 0.03	i : 0.03	: : 0.01	b : 0.01	a : 0.01	) : 0.01	# : 0.01	' : 0.01	
g : 0.20	= : 0.15	e : 0.11	c : 0.08	h : 0.06	[ : 0.06	" : 0.06	f : 0.05	$ : 0.03	i : 0.03	b : 0.01	) : 0.01	d : 0.01	! : 0.01	# : 0.01	a : 0.01	: : 0.01	
g : 0.18	= : 0.15	f : 0.15	e : 0.13	h : 0.06	" : 0.05	c : 0.03	a : 0.03	b : 0.03	[ : 0.03	i : 0.03	$ : 0.01	! : 0.01	) : 0.01	: : 0.01	# : 0.01	
g : 0.18	= : 0.13	f : 0.13	e : 0.11	[ : 0.08	h : 0.06	c : 0.05	! : 0.03	b : 0.03	" : 0.03	i : 0.03	$ : 0.01	d : 0.01	) : 0.01	# : 0.01	a : 0.01	
g : 0.15	d : 0.13	= : 0.13	f : 0.13	[ : 0.10	e : 0.08	! : 0.05	c : 0.05	h : 0.05	i : 0.03	b : 0.01	y : 0.01	" : 0.01	) : 0.01	
c : 0.18	d : 0.15	f : 0.13	g : 0.11	= : 0.10	e : 0.08	b : 0.05	h : 0.05	! : 0.03	[ : 0.03	i : 0.03	y : 0.01	
c : 0.16	d : 0.15	f : 0.13	g : 0.11	b : 0.10	= : 0.08	w : 0.06	e : 0.05	h : 0.05	i : 0.03	a : 0.01	y : 0.01	
v : 0.15	d : 0.13	c : 0.13	f : 0.11	b : 0.10	w : 0.10	= : 0.08	g : 0.06	h : 0.05	e : 0.03	y : 0.01	
v : 0.30	u : 0.23	t : 0.18	w : 0.10	= : 0.05	b : 0.03	e : 0.01	y : 0.01	x : 0.01	f : 0.01	d : 0.01	
v : 0.30	t : 0.28	u : 0.27	w : 0.10	y : 0.01	x : 0.01	
v : 0.30	t : 0.28	u : 0.27	w : 0.10	y : 0.01	x : 0.01	
v : 0.30	t : 0.28	u : 0.27	w : 0.10	y : 0.01	x : 0.01	
v : 0.30	t : 0.28	u : 0.27	w : 0.10	y : 0.01	x : 0.01	
v : 0.30	t : 0.28	u : 0.27	w : 0.10	y : 0.01	x : 0.01	
v : 0.30	t : 0.28	u : 0.27	w : 0.10	y : 0.01	x : 0.01	
v : 0.30	t : 0.28	u : 0.27	w : 0.10	y : 0.01	x : 0.01	
v : 0.30	t : 0.28	u : 0.27	w : 0.10	y : 0.01	x : 0.01	
v : 0.30	t : 0.28	u : 0.27	w : 0.10	y : 0.01	x : 0.01	
v : 0.30	t : 0.28	u : 0.27	w : 0.10	y : 0.01	x : 0.01	
v : 0.30	u : 0.27	t : 0.10	w : 0.10	c : 0.05	d : 0.03	= : 0.03	g : 0.03	y : 0.01	f : 0.01	b : 0.01	x : 0.01	
c : 0.16	v : 0.15	f : 0.11	= : 0.10	g : 0.10	d : 0.10	e : 0.08	b : 0.06	w : 0.03	u : 0.03	a : 0.01	x : 0.01	
c : 0.18	d : 0.15	f : 0.13	g : 0.11	= : 0.10	b : 0.08	e : 0.08	h : 0.05	] : 0.03	i : 0.03	x : 0.01	
d : 0.16	g : 0.15	c : 0.13	f : 0.13	e : 0.10	= : 0.10	2 : 0.05	h : 0.05	i : 0.03	b : 0.03	] : 0.01	x : 0.01	
g : 0.16	d : 0.13	f : 0.13	e : 0.11	= : 0.10	] : 0.10	2 : 0.08	h : 0.05	i : 0.03	c : 0.03	b : 0.01	6 : 0.01	
g : 0.18	f : 0.16	e : 0.11	= : 0.11	b : 0.06	d : 0.06	h : 0.06	2 : 0.06	3 : 0.03	c : 0.03	i : 0.03	6 : 0.01	] : 0.01	
g : 0.18	f : 0.15	] : 0.11	= : 0.11	3 : 0.06	h : 0.06	b : 0.06	c : 0.05	e : 0.05	2 : 0.03	i : 0.03	6 : 0.01	d : 0.01	a : 0.01	
g : 0.15	= : 0.11	] : 0.08	3 : 0.06	c : 0.06	a : 0.06	f : 0.06	h : 0.06	e : 0.06	b : 0.05	2 : 0.05	: : 0.03	i : 0.03	d : 0.03	6 : 0.01	4 : 0.01	

#score	1400.5131809217219
#seq	59
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_transcript_m3_run2.txt

#BEAR
eeeegggggggbb!!ammmma22bb]ggggggg22e	chr14:21726436-21726651(-)$1	215	132	168	12.3083
iibbgggggggccc[ammmmaccc]ggggggg]bb4	chr14:39738636-39738846(+)$1	210	135	171	13.3794
"eeeee[ccc"""cccmmmmccc333ccc]eeeee]	chr19:8467487-8467707(+)$1	220	10	46	14.2043
bb!!a!!dddd!!cccmmmmccc]dddd22a]bb]d	chr5:133551921-133552171(-)$1	250	127	163	11.6371
eeegggggggbb[bbmmmmbbbb]ggggggg22eee	chr12:69205298-69205510(+)$1	212	135	171	13.0692
""eeeeeiiiiiiiiiooooooiiiiiiiii]eeee	chr2:44685100-44685351(+)$1	251	25	61	12.9780
g!!eeeee[bb!!cccooooooccc22bbeeeeegg	chr10:34966614-34966854(-)$1	240	130	166	11.0361
eeee[ccc[bbcccooooooccc]bbccc]eeeee:	chr19:58355198-58355442(+)$1	244	103	139	11.4954
e!!ccc$$$$$cccooooooccc22ccc22eeeeeb	chr16:1830644-1830906(+)$1	262	37	73	11.0977
:ccchhhhhhhh!!bbmmmmbb22hhhhhhhh333c	chr2:153489536-153489779(+)$1	243	121	157	11.8619
:ccc[eeeeebb[cccmmmmccc]bb]eeeee]ccc	chr1:203771899-203772151(+)$1	252	192	228	11.4793
#iiiiiiiii[cccooooooccc22iiiiiiiii44	chr17:62497079-62497323(-)$1	244	33	69	14.5242
ccc[dddd[gggggggmmmmggggggg]dddd22cc	chr10:5007814-5008045(+)$1	231	37	73	11.4397
hhhhhhh!!bb!!cccmmmmccc22bb22hhhhhhh	chr9:99138427-99138680(-)$1	253	215	251	11.4240
ddd!!agggggggbboooooobb]ggggggg4444a	chr11:57266365-57266601(-)$1	236	106	142	13.1907
ciiiiiiiiiddddoooooodddd4444iiiiiiii	chr4:129199094-129199346(-)$1	252	43	79	11.7936
hhhhhh"""gggggggmmmmggggggghhhhhhhh]	chr13:97876299-97876512(+)$1	213	29	65	11.6468
dddgggggggbb[bbmmmmbbbb]ggggggg22ddd	chr14:39521060-39521275(-)$1	215	136	172	12.1362
cc[ccc[ccc[bbcccmmmmccc]bb]cccccc22c	chr10:135217549-135217840(+)$1	291	137	173	12.8670
:ggggggg[ddddcccmmmmccc]dddd]ggggggg	chr2:63210373-63210631(+)$1	258	95	131	12.5724
c[bbccc!!gggggggooooooggggggg333ccc2	chr6:24173050-24173316(-)$1	266	169	205	12.0228
eeeeeggggggg!!bbmmmmbb22ggggggg]eeee	chr17:60132596-60132855(-)$1	259	135	171	14.4002
eeeeeggggggg[cccmmmmcccggggggg]eeeee	chr6:31725362-31725621(+)$1	259	39	75	14.6498
bb"""ccc[ccc[aooooooa]ccccccbb]bb]ee	chr2:236528407-236528683(+)$1	276	25	61	11.2685
fff[dddd[gggggggmmmmgggggggdddd]ffff	chr6:142715634-142715907(+)$1	273	130	166	11.3708
fff[ccc!!ccc[cccmmmmccc]ccc]ccc]ffff	chr16:67831562-67831817(-)$1	255	132	168	14.6063
ffff[ggggggg[cccmmmmccc]ggggggg]ffff	chr2:32437923-32438136(+)$1	213	97	133	15.2024
========[cccddddmmmmdddd333ccc]=====	chr10:127430177-127430442(+)$1	265	45	81	13.3818
ggggg"""ccc[ddddmmmmdddd]ccc333ggggg	chr10:21852956-21853212(+)$1	256	22	58	12.3481
ffffff!!ccc[ddddmmmmdddd]ccc22ffffff	chr2:109362581-109362843(+)$1	262	20	56	10.9084
c[ggggggg!!a!!bbmmmmbb22a22ggggggg]c	chr16:75682673-75682950(+)$1	277	134	170	14.2234
iiiiiiii[ccc[cccmmmmccc]ccciiiiiiiii	chr2:39337515-39337792(-)$1	277	185	221	16.0571
eeehhhhhhhh"""ccclllccchhhhhhhh22eee	chr7:74081750-74081963(+)$1	213	146	182	11.5346
fffff[ffffff!!bbmmmmbb333ffffff22fff	chr1:35642319-35642577(-)$1	258	133	169	11.4811
eeeee"""cccccc!!ammmma22ccc]ccc]eeee	chr10:69828134-69828346(-)$1	212	3	39	11.9206
###ggggggg####bbmmmmbb333ggggggg333f	chr8:87357542-87357839(+)$1	297	28	64	14.9863
d[============bbmmmmbb]============2	chr15:41385080-41385342(-)$1	262	103	139	14.2654
ccc[hhhhhhhha[bbmmmmbba]hhhhhhhh]ccc	chr4:109585659-109585915(+)$1	256	138	174	12.6260
ffff"""ccc!!ddddmmmmdddd22ccc333ffff	chr6:166751961-166752174(-)$1	213	44	80	11.2409
fffffeeeee[cccccclllccc]ccceeeeeffff	chr2:61737892-61738176(-)$1	284	113	149	10.8621
eeeeeggggggg!!ccclllccc]ggggggg22eee	chr20:25669830-25670044(-)$1	214	135	171	13.9978
==============ccc]ccc]a]cccggggggg[c	chr5:32134464-32134720(-)$1	256	147	183	11.0092
:eeeee!!gggggggooooooggggggg22eeeee:	chr14:39776518-39776786(+)$1	268	61	97	10.5654
$$==========[bboooooobb]==========55	chr16:89551356-89551611(-)$1	255	195	231	12.6416
bb!!hhhhhhhh!!ccclllccc]hhhhhhhh4444	chr1:193199189-193199399(+)$1	210	34	70	12.0573
iiiiii[abb"""cccmmmmccc4444bb333a]ii	chr12:46255443-46255730(+)$1	287	176	212	13.1562
""eeeeebbccc[bboooooobb]ccc]bb]eeeee	chr20:34321048-34321309(-)$1	261	200	236	11.7570
bb"""ggggggg[aooooooaggggggg]bb]ccc8	chr17:79964412-79964623(+)$1	211	156	192	12.0176
c!!eeeee[cccabbmmmmbb]a]ccceeeee333c	chr6:24712283-24712545(-)$1	262	8	44	11.8991
=========[bb[cccmmmmccc]bb]=========	chr15:93435973-93436242(+)$1	269	51	87	15.0524
eeeegggggggbb!!ammmma22bb]ggggggg22e	chr14:21726400-21726636(-)$1	236	117	153	12.3083
c[hhhhhhhh!!cccnnnnnccc22hhhhhhhhccc	chr8:145965092-145965381(-)$1	289	9	45	10.8099
ggggggg!!cccddddoooooodddd22cccggggg	chrX:108921888-108922146(-)$1	258	172	208	11.2018
===!!ccc[a[ddddmmmmdddd]accc]=======	chr12:107360949-107361161(+)$1	212	39	75	12.3211
eeegggggggbb[annnnna]bb]ggggggg22eee	chr22:50862981-50863200(+)$1	219	134	170	11.4026
""ffffff[ccc[bboooooobb]ccc]ffffffdd	chr6:148745271-148745528(+)$1	257	45	81	11.8526
c[agggggggbb[bbmmmmbbbb]ggggggg]a]cc	chr2:135683348-135683614(+)$1	266	136	172	13.4135
e!!ccc[cccffffffmmmmffffff]ccc]ccc33	chr18:9123395-9123660(+)$1	265	40	76	11.3338

#otherMatches

#Seq PSSM
ggagugcaguggcaugaucucuggcucacugcaacc	chr14:21726436-21726651(-)$1	215	132	168	12.3083
ggagugcaguggcuugaucucagcucacugcagcuu	chr14:39738636-39738846(+)$1	210	135	171	13.3794
GGAACACGGCCUCUGAACCUUCGCUUGUUUUGUUCG	chr19:8467487-8467707(+)$1	220	10	46	14.2043
uguugcccaggcuguucucaaacuccugaccucaag	chr5:133551921-133552171(-)$1	250	127	163	11.6371
gagugcaguggcaugaucucggcucacugcaaccuc	chr12:69205298-69205510(+)$1	212	135	171	13.0692
gauuaaucuggguuuggagacacagaucuagcauua	chr2:44685100-44685351(+)$1	251	25	61	12.9780
UCUUUCAUUAGAACGGUGAUUUUCGAGCUGUGAAAC	chr10:34966614-34966854(-)$1	240	130	166	11.0361
agacagggucuugcuguguugcacagucuggucuca	chr19:58355198-58355442(+)$1	244	103	139	11.4954
CAAGUUAACAAUGGUCACCUCCAGAAAUGGGCUGGG	chr16:1830644-1830906(+)$1	262	37	73	11.0977
acagugcagugacaugaucacagcucacugcagucc	chr2:153489536-153489779(+)$1	243	121	157	11.8619
AGAUUGGAACUCAGUGAAGACACAGAUGUUCCUGUU	chr1:203771899-203772151(+)$1	252	192	228	11.4793
AAGGACCUUGUACAUUUUUUUGUUUCAAGGUCCUCA	chr17:62497079-62497323(-)$1	244	33	69	14.5242
ugaaauuguuuuggggacACUUCCAAACUAGUGGUC	chr10:5007814-5008045(+)$1	231	37	73	11.4397
agcugggauuacaggcgccugccacuaugcccagcu	chr9:99138427-99138680(-)$1	253	215	251	11.4240
GAGCUGUUGAGGCCUcccuucagagucucaguuucc	chr11:57266365-57266601(-)$1	236	106	142	13.1907
ACUCAGGCCCCACUCCCAUAAGUGGCACGGGCCUGG	chr4:129199094-129199346(-)$1	252	43	79	11.7936
GGUCAGCACAGGUUUUCUGCAGGGCUUCUGGCUGGG	chr13:97876299-97876512(+)$1	213	29	65	11.6468
gagugcaguggcacgaucucggcucacugcaaccuc	chr14:39521060-39521275(-)$1	215	136	172	12.1362
agugguacagucucagcucacugcagccugaccucc	chr10:135217549-135217840(+)$1	291	137	173	12.8670
AUUUUUGUUAAUGGUCUAUGGAUACAUUUGCAAGGA	chr2:63210373-63210631(+)$1	258	95	131	12.5724
cugccuccuggguucaagcaccugagccucccgagu	chr6:24173050-24173316(-)$1	266	169	205	12.0228
ggagugcaguggugugaucucagcucacugcaacuc	chr17:60132596-60132855(-)$1	259	135	171	14.4002
uuccuuccuagacugugagcacaucugggacaggga	chr6:31725362-31725621(+)$1	259	39	75	14.6498
CUCAAGUGUCUACCUCCUCUGAUAGCACAGGUGUCU	chr2:236528407-236528683(+)$1	276	25	61	11.2685
cuggagugcaguggugugaccaucacucacugcagc	chr6:142715634-142715907(+)$1	273	130	166	11.3708
uuggaguccaguggagugaucucggcucacugcaac	chr16:67831562-67831817(-)$1	255	132	168	14.6063
gcuggagugagugguacagauauagcucacugcagu	chr2:32437923-32438136(+)$1	213	97	133	15.2024
GUAAGAUAUGAAGACAGUUGUGUCAACUuuuuauuu	chr10:127430177-127430442(+)$1	265	45	81	13.3818
gauccacccgccuuggccucccaaagugccgggauu	chr10:21852956-21853212(+)$1	256	22	58	12.3481
gauccccccaccuuggccuuccaaagugcugggauu	chr2:109362581-109362843(+)$1	262	20	56	10.9084
gugaugcagccgcgcgaucacgaccuacugcauccu	chr16:75682673-75682950(+)$1	277	134	170	14.2234
GAUUGUGUUGAUAUUUUUAUGAAAAUUACAUGAUUC	chr2:39337515-39337792(-)$1	277	185	221	16.0571
gagugcagugguaugcuuuuggcucacuguaaccuu	chr7:74081750-74081963(+)$1	213	146	182	11.5346
ggagcaguggugcacagucuuggcucaccgcaagcu	chr1:35642319-35642577(-)$1	258	133	169	11.4811
cugggcucaagugauccuccugccucagcuucccca	chr10:69828134-69828346(-)$1	212	3	39	11.9206
UAAUUUUAGGGGAGUCCAUGGAACACCUGAAAGUCA	chr8:87357542-87357839(+)$1	297	28	64	14.9863
uuuuuaggagacaggcucuugcucuguuuccuaggu	chr15:41385080-41385342(-)$1	262	103	139	14.2654
ggagugcgguggcaugaucucgguucacugcaaucu	chr4:109585659-109585915(+)$1	256	138	174	12.6260
UCCUCCUCAGUUGGAGCCAUUUUCUUCUGCCUGGGA	chr6:166751961-166752174(-)$1	213	44	80	11.2409
ucucacgcugucgcccaagcuggagugcaguggcgg	chr2:61737892-61738176(-)$1	284	113	149	10.8621
ggagugcaguggcacggucuccgcucacugcaagcu	chr20:25669830-25670044(-)$1	214	135	171	13.9978
ggaggcugaggcgggugaaucuccugagcucaggag	chr5:32134464-32134720(-)$1	256	147	183	11.0092
CAAAAGUUAAAAGAAuuuuuuuuuuuuuuuuuuuuu	chr14:39776518-39776786(+)$1	268	61	97	10.5654
GGUUGAGACAGCUGUCAGGGUGCUGCUGUCUCAGUU	chr16:89551356-89551611(-)$1	255	195	231	12.6416
cagauuugauguuugaauucuuccgcauuagaggaa	chr1:193199189-193199399(+)$1	210	34	70	12.0573
ugcugggacuacaagcguaagcuacuaagcccugcc	chr12:46255443-46255730(+)$1	287	176	212	13.1562
gugauuaccggcaugcaccaucaggccuggcuaauu	chr20:34321048-34321309(-)$1	261	200	236	11.7570
GGCCAGGCCUUGACUGCCCUGCAGGGCCCUCGCUGU	chr17:79964412-79964623(+)$1	211	156	192	12.0176
cccagguuugagccguucuugugccucagccucuug	chr6:24712283-24712545(-)$1	262	8	44	11.8991
AAAUGAAUUUUGGUGAAUUCUCAACAUGAuuuauuu	chr15:93435973-93436242(+)$1	269	51	87	15.0524
ggagugcaguggcaugaucucuggcucacugcaacc	chr14:21726400-21726636(-)$1	236	117	153	12.3083
UAUUUUUGUGGUUUCCUGAAGAAGACAUGAGAAGAU	chr8:145965092-145965381(-)$1	289	9	45	10.8099
caguccuccugccuuaucuucuugaguagcaaggac	chrX:108921888-108922146(-)$1	258	172	208	11.2018
AAAAAUAUACUGAAUUAAAGUUCUGAUAGUUUUUAu	chr12:107360949-107361161(+)$1	212	39	75	12.3211
gagugcaguggcgggaccuuggcucacugcaaucuc	chr22:50862981-50863200(+)$1	219	134	170	11.4026
UUGUCUUUUAAAAAAuuuuuuuucuuuuagagacgg	chr6:148745271-148745528(+)$1	257	45	81	11.8526
gagugcaguggcacaaucauggcucacugcagcauc	chr2:135683348-135683614(+)$1	266	136	172	13.4135
CUUUAUUUUGGCUGUAUUUCUACAGCACAAUAUAUA	chr18:9123395-9123660(+)$1	265	40	76	11.3338

#DB
(((((((((((((..(....)..)).)))))))..)	chr14:21726436-21726651(-)$1	1	132	168	12.3083
((((((((((((((.(....)))).))))))).)).	chr14:39738636-39738846(+)$1	1	135	171	13.3794
.(((((.(((...(((....)))...))).))))).	chr19:8467487-8467707(+)$1	1	10	46	14.2043
((..(..((((..(((....))).))))..).)).)	chr5:133551921-133552171(-)$1	1	127	163	11.6371
((((((((((((.((....)))).)))))))..)))	chr12:69205298-69205510(+)$1	1	135	171	13.0692
..((((((((((((((......))))))))).))))	chr2:44685100-44685351(+)$1	1	25	61	12.9780
(..(((((.((..(((......)))..)))))))))	chr10:34966614-34966854(-)$1	1	130	166	11.0361
((((.(((.(((((......))).))))).))))).	chr19:58355198-58355442(+)$1	1	103	139	11.4954
(..(((.....(((......)))..)))..))))))	chr16:1830644-1830906(+)$1	1	37	73	11.0977
.(((((((((((..((....))..))))))))...)	chr2:153489536-153489779(+)$1	1	121	157	11.8619
.(((.(((((((.(((....))).)).))))).)))	chr1:203771899-203772151(+)$1	1	192	228	11.4793
.(((((((((.(((......)))..)))))))))..	chr17:62497079-62497323(-)$1	1	33	69	14.5242
(((.((((.(((((((....))))))).))))..))	chr10:5007814-5008045(+)$1	1	37	73	11.4397
(((((((..((..(((....)))..))..)))))))	chr9:99138427-99138680(-)$1	1	215	251	11.4240
(((..((((((((((......)).)))))))....)	chr11:57266365-57266601(-)$1	1	106	142	13.1907
((((((((((((((......))))....))))))))	chr4:129199094-129199346(-)$1	1	43	79	11.7936
((((((...(((((((....))))))))))))))).	chr13:97876299-97876512(+)$1	1	29	65	11.6468
((((((((((((.((....)))).)))))))..)))	chr14:39521060-39521275(-)$1	1	136	172	12.1362
((.(((.(((.(((((....))).)).))))))..)	chr10:135217549-135217840(+)$1	1	137	173	12.8670
.(((((((.(((((((....))).)))).)))))))	chr2:63210373-63210631(+)$1	1	95	131	12.5724
(.(((((..(((((((......)))))))...))).	chr6:24173050-24173316(-)$1	1	169	205	12.0228
((((((((((((..((....))..))))))).))))	chr17:60132596-60132855(-)$1	1	135	171	14.4002
((((((((((((.(((....)))))))))).)))))	chr6:31725362-31725621(+)$1	1	39	75	14.6498
((...(((.(((.(......).)))))))).)).))	chr2:236528407-236528683(+)$1	1	25	61	11.2685
(((.((((.(((((((....))))))))))).))))	chr6:142715634-142715907(+)$1	1	130	166	11.3708
(((.(((..(((.(((....))).))).))).))))	chr16:67831562-67831817(-)$1	1	132	168	14.6063
((((.(((((((.(((....))).))))))).))))	chr2:32437923-32438136(+)$1	1	97	133	15.2024
((((((((.(((((((....))))...))).)))))	chr10:127430177-127430442(+)$1	1	45	81	13.3818
(((((...(((.((((....)))).)))...)))))	chr10:21852956-21853212(+)$1	1	22	58	12.3481
((((((..(((.((((....)))).)))..))))))	chr2:109362581-109362843(+)$1	1	20	56	10.9084
(.(((((((..(..((....))..)..))))))).)	chr16:75682673-75682950(+)$1	1	134	170	14.2234
((((((((.(((.(((....))).))))))))))))	chr2:39337515-39337792(-)$1	1	185	221	16.0571
(((((((((((...(((...)))))))))))..)))	chr7:74081750-74081963(+)$1	1	146	182	11.5346
(((((.((((((..((....))...))))))..)))	chr1:35642319-35642577(-)$1	1	133	169	11.4811
(((((...((((((..(....)..))).))).))))	chr10:69828134-69828346(-)$1	1	3	39	11.9206
...(((((((....((....))...)))))))...)	chr8:87357542-87357839(+)$1	1	28	64	14.9863
(.((((((((((((((....)).)))))))))))).	chr15:41385080-41385342(-)$1	1	103	139	14.2654
(((.(((((((((.((....))).)))))))).)))	chr4:109585659-109585915(+)$1	1	138	174	12.6260
((((...(((..((((....))))..)))...))))	chr6:166751961-166752174(-)$1	1	44	80	11.2409
)))))(((((.((((((...))).))))))))((((	chr2:61737892-61738176(-)$1	1	113	149	10.8621
((((((((((((..(((...))).)))))))..)))	chr20:25669830-25670044(-)$1	1	135	171	13.9978
))))))))))))))))).))).).)))(((((((.(	chr5:32134464-32134720(-)$1	1	147	183	11.0092
.(((((..(((((((......)))))))..))))).	chr14:39776518-39776786(+)$1	1	61	97	10.5654
..((((((((((.((......)).))))))))))..	chr16:89551356-89551611(-)$1	1	195	231	12.6416
((..((((((((..(((...))).))))))))....	chr1:193199189-193199399(+)$1	1	34	70	12.0573
((((((.(((...(((....)))....))...).))	chr12:46255443-46255730(+)$1	1	176	212	13.1562
..((((((((((.((......)).))).)).)))))	chr20:34321048-34321309(-)$1	1	200	236	11.7570
((...(((((((.(......)))))))).)).))).	chr17:79964412-79964623(+)$1	1	156	192	12.0176
(..(((((.((((((....)).).))))))))...)	chr6:24712283-24712545(-)$1	1	8	44	11.8991
(((((((((.((.(((....))).)).)))))))))	chr15:93435973-93436242(+)$1	1	51	87	15.0524
(((((((((((((..(....)..)).)))))))..)	chr14:21726400-21726636(-)$1	1	117	153	12.3083
(.((((((((..(((.....)))..)))))))))))	chr8:145965092-145965381(-)$1	1	9	45	10.8099
(((((((..(((((((......))))..))))))))	chrX:108921888-108922146(-)$1	1	172	208	11.2018
(((..(((.(.((((....)))).)))).)))))))	chr12:107360949-107361161(+)$1	1	39	75	12.3211
((((((((((((.(.....).)).)))))))..)))	chr22:50862981-50863200(+)$1	1	134	170	11.4026
..((((((.(((.((......)).))).))))))))	chr6:148745271-148745528(+)$1	1	45	81	11.8526
(.((((((((((.((....)))).))))))).).))	chr2:135683348-135683614(+)$1	1	136	172	13.4135
(..(((.(((((((((....)))))).))).)))..	chr18:9123395-9123660(+)$1	1	40	76	11.3338

#PSSM
e : 0.20	c : 0.15	f : 0.12	" : 0.06	b : 0.06	: : 0.06	= : 0.06	i : 0.05	g : 0.05	d : 0.05	# : 0.03	h : 0.03	$ : 0.01	
e : 0.20	f : 0.12	i : 0.08	c : 0.08	[ : 0.08	b : 0.06	! : 0.06	= : 0.06	" : 0.05	g : 0.05	h : 0.03	d : 0.03	# : 0.01	$ : 0.01	
e : 0.24	f : 0.13	! : 0.10	= : 0.10	c : 0.06	i : 0.06	g : 0.06	h : 0.05	b : 0.03	d : 0.03	" : 0.03	[ : 0.01	# : 0.01	a : 0.01	
e : 0.22	g : 0.15	f : 0.10	c : 0.08	= : 0.08	! : 0.06	i : 0.06	[ : 0.06	h : 0.06	b : 0.03	" : 0.03	
g : 0.20	e : 0.17	h : 0.12	c : 0.08	= : 0.08	i : 0.06	f : 0.06	[ : 0.05	" : 0.05	d : 0.03	! : 0.03	a : 0.01	
g : 0.27	e : 0.13	c : 0.13	h : 0.12	= : 0.08	i : 0.06	" : 0.05	d : 0.03	f : 0.03	! : 0.01	a : 0.01	[ : 0.01	
g : 0.29	e : 0.10	h : 0.10	c : 0.08	= : 0.08	[ : 0.06	" : 0.06	! : 0.05	i : 0.05	d : 0.03	f : 0.03	$ : 0.01	
g : 0.27	c : 0.12	! : 0.10	h : 0.08	= : 0.08	i : 0.06	e : 0.06	d : 0.05	" : 0.05	f : 0.03	$ : 0.01	a : 0.01	b : 0.01	
g : 0.27	[ : 0.18	c : 0.12	h : 0.08	! : 0.06	= : 0.06	i : 0.05	e : 0.03	b : 0.03	d : 0.01	$ : 0.01	" : 0.01	f : 0.01	
g : 0.32	c : 0.25	h : 0.08	b : 0.06	i : 0.05	= : 0.05	d : 0.03	e : 0.03	$ : 0.01	! : 0.01	f : 0.01	[ : 0.01	a : 0.01	
g : 0.24	c : 0.18	b : 0.15	h : 0.06	[ : 0.06	d : 0.05	! : 0.05	= : 0.05	" : 0.03	f : 0.03	i : 0.01	$ : 0.01	# : 0.01	
c : 0.24	g : 0.18	b : 0.15	! : 0.08	" : 0.05	h : 0.05	d : 0.05	= : 0.05	[ : 0.03	f : 0.03	i : 0.01	a : 0.01	# : 0.01	
[ : 0.25	! : 0.15	d : 0.13	c : 0.12	g : 0.10	b : 0.05	" : 0.05	= : 0.03	a : 0.03	i : 0.01	# : 0.01	f : 0.01	
c : 0.34	! : 0.13	b : 0.13	d : 0.12	g : 0.08	a : 0.05	= : 0.03	i : 0.01	" : 0.01	# : 0.01	[ : 0.01	f : 0.01	
c : 0.32	b : 0.25	o : 0.10	d : 0.10	g : 0.08	! : 0.05	[ : 0.01	i : 0.01	n : 0.01	f : 0.01	
c : 0.31	o : 0.18	b : 0.12	m : 0.08	d : 0.08	g : 0.06	a : 0.05	n : 0.03	i : 0.01	! : 0.01	f : 0.01	
m : 0.60	o : 0.25	c : 0.08	n : 0.03	a : 0.01	
m : 0.62	o : 0.25	l : 0.06	n : 0.03	] : 0.01	
m : 0.62	o : 0.25	l : 0.06	n : 0.03	c : 0.01	
m : 0.53	o : 0.25	b : 0.06	l : 0.06	c : 0.01	n : 0.01	d : 0.01	a : 0.01	
c : 0.36	b : 0.18	o : 0.15	d : 0.10	a : 0.08	g : 0.05	m : 0.01	] : 0.01	f : 0.01	
c : 0.36	b : 0.25	d : 0.10	g : 0.08	o : 0.06	] : 0.05	2 : 0.03	a : 0.01	f : 0.01	
c : 0.39	b : 0.13	d : 0.12	2 : 0.10	g : 0.10	a : 0.05	3 : 0.03	i : 0.01	] : 0.01	f : 0.01	
] : 0.41	2 : 0.13	g : 0.12	d : 0.10	c : 0.05	3 : 0.05	b : 0.03	i : 0.01	h : 0.01	= : 0.01	4 : 0.01	f : 0.01	
g : 0.25	c : 0.17	b : 0.10	2 : 0.08	3 : 0.06	h : 0.06	] : 0.05	d : 0.05	4 : 0.03	a : 0.03	= : 0.03	i : 0.01	f : 0.01	
g : 0.29	c : 0.22	b : 0.08	h : 0.08	d : 0.05	2 : 0.05	] : 0.03	3 : 0.03	i : 0.03	4 : 0.03	f : 0.03	= : 0.03	
g : 0.32	c : 0.27	h : 0.08	] : 0.06	2 : 0.05	d : 0.03	i : 0.03	4 : 0.03	= : 0.03	b : 0.01	3 : 0.01	f : 0.01	
g : 0.31	c : 0.18	h : 0.10	] : 0.08	d : 0.05	i : 0.05	e : 0.05	= : 0.05	b : 0.03	2 : 0.03	4 : 0.01	f : 0.01	
g : 0.27	c : 0.15	h : 0.10	2 : 0.08	i : 0.06	b : 0.06	e : 0.05	] : 0.05	= : 0.05	d : 0.03	f : 0.03	3 : 0.01	
g : 0.27	h : 0.12	c : 0.10	2 : 0.06	i : 0.06	e : 0.06	3 : 0.06	= : 0.06	b : 0.05	] : 0.03	d : 0.03	f : 0.03	
g : 0.25	e : 0.13	h : 0.12	] : 0.08	i : 0.06	c : 0.06	3 : 0.06	= : 0.06	f : 0.05	d : 0.03	a : 0.01	b : 0.01	
e : 0.17	g : 0.15	] : 0.15	2 : 0.10	h : 0.10	= : 0.08	i : 0.05	3 : 0.05	c : 0.03	f : 0.03	d : 0.01	4 : 0.01	b : 0.01	
e : 0.17	g : 0.12	2 : 0.12	f : 0.12	= : 0.08	c : 0.06	] : 0.05	3 : 0.05	i : 0.05	h : 0.05	b : 0.03	4 : 0.03	a : 0.03	
e : 0.24	f : 0.13	c : 0.10	g : 0.08	= : 0.08	2 : 0.06	3 : 0.05	i : 0.05	] : 0.05	b : 0.03	h : 0.03	4 : 0.03	d : 0.01	
e : 0.24	c : 0.12	f : 0.12	g : 0.06	3 : 0.06	= : 0.06	2 : 0.05	4 : 0.05	i : 0.05	] : 0.03	h : 0.03	d : 0.03	b : 0.01	[ : 0.01	5 : 0.01	
e : 0.20	c : 0.17	f : 0.13	g : 0.06	4 : 0.05	d : 0.05	i : 0.05	= : 0.05	] : 0.03	: : 0.03	2 : 0.03	b : 0.01	h : 0.01	a : 0.01	5 : 0.01	8 : 0.01	3 : 0.01	

#score	724.2983806545344
#seq	58
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_UTR_m1_run2.txt

#BEAR
eeeefffffftttttttttttffffff]eee	chr6:43753967-43754183(+)$1	216	103	134	24.1667
cccffffffuuuuuuuuuuuuffffff]ccc	chr15:73852665-73852910(-)$1	245	214	245	25.9745
eeeee[bbwwwwwwwwwwwwwwbb]eeeee:	chr2:70508161-70508405(+)$1	244	8	39	22.4306
fff[eeeeevvvvvvvvvvvvveeeee22ff	chr3:132361420-132361656(-)$1	236	138	169	25.2974
!!bb!!ddddtttttttttttdddd22bbff	chr9:131152640-131152898(+)$1	258	150	181	22.5454
cccc!!cccuuuuuuuuuuuuccc22ccc]c	chr13:24249908-24250216(+)$1	308	203	234	25.8030
[ccccccwwwwwwwwwwwwwwccc]ccc]ee	chr1:25568763-25569047(-)$1	284	134	165	24.2548
ddd[fffffftttttttttttffffffdddd	chr7:56078670-56079005(-)$1	335	102	133	23.4875
d[ccc[ddddtttttttttttdddd]ccc33	chr20:25433462-25433763(-)$1	301	228	259	24.3159
e[gggggggwwwwwwwwwwwwwwggggggg3	chr9:117069913-117070157(+)$1	244	170	201	25.3647
ffffffcccuuuuuuuuuuuuccc]ffffff	chr1:234742452-234742772(-)$1	320	195	226	25.5685
c[ffffffwwwwwwwwwwwwwwffffff]cc	chr8:17427682-17427956(+)$1	274	167	198	25.1741
ff[a[dddduuuuuuuuuuuudddda]ffff	chr20:60757261-60757543(+)$1	282	243	274	24.4524
iiiiiiiiivvvvvvvvvvvvviiiiiiiii	chr3:183862658-183862947(+)$1	289	73	104	26.3715
eeeeeeee[atttttttttttaeeeee22ee	chr16:2821251-2821487(+)$1	236	46	77	24.5094
="""eeeeeuuuuuuuuuuuueeeee88888	chr6:90352757-90353042(-)$1	285	177	208	23.3546
iiiiiiiiiuuuuuuuuuuuuiiiiiiiii2	chr4:123283651-123283979(+)$1	328	223	254	26.0612
gggggeeeeettttttttttteeeee]gggg	chr2:70438798-70439029(-)$1	231	42	73	24.8265
###eeeeevvvvvvvvvvvvveeeee333ff	chr19:55692666-55692952(-)$1	286	56	87	25.7856
ggggddddbbtttttttttttbb]dddd]gg	chr1:234742303-234742558(-)$1	255	94	125	23.2840
hhhhhhhhvvvvvvvvvvvvvhhhhhhhh33	chr16:67918125-67918344(+)$1	219	21	52	23.0944
ccc[eeeeewwwwwwwwwwwwwweeeeeccc	chr15:34818859-34819162(-)$1	303	249	280	24.3512
gg!!fffffftttttttttttffffff22gg	chr17:79524141-79524422(-)$1	281	79	110	24.8429
b!!fffffftttttttttttffffff22bbe	chr2:98272929-98273204(-)$1	275	96	127	23.0316
$$ccc[cccuuuuuuuuuuuuccc]ccc333	chr1:55532031-55532341(-)$1	310	186	217	26.2097
iiiiiiiiivvvvvvvvvvvvviiiiiiiii	chr5:59892812-59893149(-)$1	337	148	179	26.3715
b[affffffvvvvvvvvvvvvvffffff444	chr19:19469235-19469623(+)$1	388	280	311	25.8596
""gggggggyyyyyyyyyyyyyyyygggggg	chr2:160624786-160625155(+)$1	369	124	155	22.6571
ggggddddbbtttttttttttbb]dddd]gg	chr1:234742358-234742570(-)$1	212	106	137	23.2840
d[ccc[ddddtttttttttttdddd]ccc33	chr20:25433360-25433662(-)$1	302	127	158	24.3159
gggggggwwwwwwwwwwwwwwggggggg]bb	chr2:70438524-70438732(-)$1	208	126	157	24.3776
=========vvvvvvvvvvvvv=========	chr17:40465254-40465500(-)$1	246	40	71	26.8072
a[ggggggguuuuuuuuuuuuggggggg]a:	chr14:24910313-24910580(+)$1	267	190	221	25.6245
cccc!!ddddtttttttttttdddd22ccc]	chr21:35275684-35275951(-)$1	267	36	67	23.6662
ccc"""cccvvvvvvvvvvvvvccc333ccc	chr15:79214026-79214310(-)$1	284	218	249	26.0889
gggggggwwwwwwwwwwwwwwggggggg]bb	chr2:70438456-70438724(-)$1	268	118	149	24.3776
c[gggggggyyyyyyyyyyyyyyyygggggg	chr1:185266849-185267115(-)$1	266	135	166	22.8071
dddd[cccvvvvvvvvvvvvvccc]dddd==	chr6:132211741-132212017(+)$1	276	151	182	24.7200
ee[ffffffuuuuuuuuuuuuffffffeeee	chr20:25206717-25206999(+)$1	282	212	243	25.4149
:gggggggwwwwwwwwwwwwwwggggggg:E	chr14:23528055-23528296(-)$1	241	144	175	22.3902
"""eeeeevvvvvvvvvvvvveeeee333cc	chr11:62283739-62283985(-)$1	246	7	38	26.0534
gggffffffuuuuuuuuuuuuffffff]ggg	chr17:8062568-8062846(-)$1	278	165	196	26.2398
eeeee[cccvvvvvvvvvvvvvccceeeee]	chrX:70795448-70795703(+)$1	255	189	220	25.5812
$$$$a!!bbvvvvvvvvvvvvvbb22a333h	chr22:29696253-29696541(+)$1	288	88	119	23.8797
e[gggggggxxxxxxxxxxxxxxxggggggg	chr1:1322401-1322648(-)$1	247	192	223	20.1311
!!ddddcccuuuuuuuuuuuuccc]dddd22	chr2:27422373-27422636(-)$1	263	40	71	24.7236
eeffffffwwwwwwwwwwwwwwffffff22e	chr20:52183787-52184053(-)$1	266	222	253	24.3220
eeeee[cccwwwwwwwwwwwwwwccc]eeee	chr10:121334879-121335175(-)$1	296	188	219	24.0345
cc[ffffffuuuuuuuuuuuuffffff]ccc	chr19:18499850-18500081(+)$1	231	88	119	26.0427
==========ttttttttttt==========	chr7:150070922-150071200(+)$1	278	126	157	25.4654
c[eeeeeyyyyyyyyyyyyyyyyeeeee]cc	chr19:14589058-14589357(-)$1	299	135	166	22.6122
effffffwwwwwwwwwwwwwwffffffiiii	chr17:45700436-45700685(+)$1	249	145	176	24.2032
ccc[eeeeeuuuuuuuuuuuueeeeeccc]d	chr6:33161303-33161549(-)$1	246	83	114	25.5405
eeeefffffftttttttttttffffff]eee	chr6:43753934-43754166(+)$1	232	136	167	24.1667
ggg[eeeeevvvvvvvvvvvvveeeee]ggg	chr1:42642298-42642567(-)$1	269	25	56	26.2181
=====dddduuuuuuuuuuuuddddgggggg	chr2:234379900-234380165(+)$1	265	68	99	25.6672
ccc[ddddvvvvvvvvvvvvvdddd]cccff	chr16:30016750-30016999(+)$1	249	180	211	24.8937
c[bb[cccvvvvvvvvvvvvvccc22bb]cc	chr14:24612503-24612731(-)$1	228	33	64	24.8297

#otherMatches

#Seq PSSM
GGGAAAAGAUAUUAACAUCACGUCUUUGUCU	chr6:43753967-43754183(+)$1	216	103	134	24.1667
UCAUGUAAAUUCAUAAAUCCUUUUGCACUGA	chr15:73852665-73852910(-)$1	245	214	245	25.9745
GUGGACAGCAUCCUCACUACCCCUCUCUACU	chr2:70508161-70508405(+)$1	244	8	39	22.4306
AAAUUAACACUUAAUCUUAUUUUGUUGCUUU	chr3:132361420-132361656(-)$1	236	138	169	25.2974
CCUCCUCCACAACUGAAUAUAGUGGCUGAAA	chr9:131152640-131152898(+)$1	258	150	181	22.5454
UCAAUUUAGAUUUCAUCAUUACUAUUUUGCA	chr13:24249908-24250216(+)$1	308	203	234	25.8030
CUCUUGCAGAUAUGAGAGAUAGCACAGAUGG	chr1:25568763-25569047(-)$1	284	134	165	24.2548
UAUAUUUGUAGCUAUAUUUCAUACAAAGUGC	chr7:56078670-56079005(-)$1	335	102	133	23.4875
AUGAUGGUGUUUAUUGCAAAUGCACAAUCUU	chr20:25433462-25433763(-)$1	301	228	259	24.3159
ACCAGGCUGUCUGCCUCUAUCCCCAGCCUGC	chr9:117069913-117070157(+)$1	244	170	201	25.3647
GCAAAUCAGAAAUGCUUCUAGCUGUAUUUGU	chr1:234742452-234742772(-)$1	320	195	226	25.5685
CUAUGUCUGUAAAAACCAACAAAGGCAUUGG	chr8:17427682-17427956(+)$1	274	167	198	25.1741
GGUGUAAUCUCUUAAUAAACUGGUUCUUCAA	chr20:60757261-60757543(+)$1	282	243	274	24.4524
AGUCACACUGCCUGCUCCUUUGGGUGUGAUU	chr3:183862658-183862947(+)$1	289	73	104	26.3715
UGAGGUUGUGAACCCCUCCCCCCAACUUUUC	chr16:2821251-2821487(+)$1	236	46	77	24.5094
AAACGCUGUGUCCAGAACUCAGCAGCUCCAU	chr6:90352757-90353042(-)$1	285	177	208	23.3546
AACUAUUAUAAUAAAGUCACAGUAAUGGUUU	chr4:123283651-123283979(+)$1	328	223	254	26.0612
CAUUUACAUGUAUUAUUUCAUUAUGUAAAAU	chr2:70438798-70439029(-)$1	231	42	73	24.8265
GAGAGGGAUGAUAGCUUGGAUUCCCUAGGUC	chr19:55692666-55692952(-)$1	286	56	87	25.7856
UGCUGGCCCCUUUCUCAGGCCGGAGGCCAAG	chr1:234742303-234742558(-)$1	255	94	125	23.2840
GGCCCCCAUCUCUGGGGUGUUUGGGGGUCAG	chr16:67918125-67918344(+)$1	219	21	52	23.0944
AGUUCGUGUUCCCUGUUUUAAUCACAUGACU	chr15:34818859-34819162(-)$1	303	249	280	24.3512
UGUUCAGUAAUGCACUUUAUUUUAUUGUCCA	chr17:79524141-79524422(-)$1	281	79	110	24.8429
AGCUGGCGUGUGGGAAUUGAGCGCCAUGUCA	chr2:98272929-98273204(-)$1	275	96	127	23.0316
AUCUUGUUUAUAAAAUUUCAAAAGGAAGUAG	chr1:55532031-55532341(-)$1	310	186	217	26.2097
AGCUAGUGUUUUUAUAACAUAUAUAUUAGUU	chr5:59892812-59893149(-)$1	337	148	179	26.3715
UGGAUUUUGUUUCCUAUAUAUUCAAAGUAAA	chr19:19469235-19469623(+)$1	388	280	311	25.8596
ACCCUUAGGAUACACUUUAAAACACCUUAAG	chr2:160624786-160625155(+)$1	369	124	155	22.6571
UGCUGGCCCCUUUCUCAGGCCGGAGGCCAAG	chr1:234742358-234742570(-)$1	212	106	137	23.2840
AUGAUGGUGUUUAUUGCAAAUGCACAAUCUU	chr20:25433360-25433662(-)$1	302	127	158	24.3159
CUGGGCAAAGCAUCUUUUAAAUGUUCAGAGG	chr2:70438524-70438732(-)$1	208	126	157	24.3776
UUCAUAGUGUAAAAAUUUAUAUUAUUGUGAG	chr17:40465254-40465500(-)$1	246	40	71	26.8072
gguuguuguaaggaauaaaugauaauaagca	chr14:24910313-24910580(+)$1	267	190	221	25.6245
UUGUGCGCAUUGGCGAGAAAUAUGUUGACAU	chr21:35275684-35275951(-)$1	267	36	67	23.6662
GGCCAUGACUCAAACCAGGUCUGUCCUCGCC	chr15:79214026-79214310(-)$1	284	218	249	26.0889
CUGGGCAAAGCAUCUUUUAAAUGUUCAGAGG	chr2:70438456-70438724(-)$1	268	118	149	24.3776
UGAAGGUCUGUUUUGUGUACUUUUAAGACUU	chr1:185266849-185267115(-)$1	266	135	166	22.8071
AAAGACAGACCACACCUAAAACUGCCUUUCU	chr6:132211741-132212017(+)$1	276	151	182	24.7200
AUGAGCUGCUGUAAACUAUUUGUGGCUGUGC	chr20:25206717-25206999(+)$1	282	212	243	25.4149
CCCUCUCAUUUCCCAUUAAGUCUGAGAGGCA	chr14:23528055-23528296(-)$1	241	144	175	22.3902
CUUAAGAUUUCAUAUAUAUAUAUUUUUUUGC	chr11:62283739-62283985(-)$1	246	7	38	26.0534
CCCCCACACUUCUGGUUUUCUGUGUGGAGGG	chr17:8062568-8062846(-)$1	278	165	196	26.2398
UUUCUAUUGUACUCUGCUUUAUCAAAGAAGU	chrX:70795448-70795703(+)$1	255	189	220	25.5812
UUUUCUUCCUUCUUUUAAAAAUGGUUGUUUA	chr22:29696253-29696541(+)$1	288	88	119	23.8797
GACCUUGGUGGAUUUGGAAAUGGAACUGAGG	chr1:1322401-1322648(-)$1	247	192	223	20.1311
GUGGAGCAGCCAUCUAUCUACCUGACUCCUG	chr2:27422373-27422636(-)$1	263	40	71	24.7236
UGGUUUUAUAUUUUUUUUUCUUUGAGACAAC	chr20:52183787-52184053(-)$1	266	222	253	24.3220
CAUGAUGGAUAUGAACAUGAUUUUUCUUUAU	chr10:121334879-121335175(-)$1	296	188	219	24.0345
GUAUUUAUUUAAAACUCUGGUGAUAAAAAUA	chr19:18499850-18500081(+)$1	231	88	119	26.0427
uuguucuguucucuggaacuaaacagaacaa	chr7:150070922-150071200(+)$1	278	126	157	25.4654
CCCCCGGACCCUGCGAUGAUGACCCGGGCGC	chr19:14589058-14589357(-)$1	299	135	166	22.6122
UUGuuuuaaaaaaauaauuaaaaaaCAGUUG	chr17:45700436-45700685(+)$1	249	145	176	24.2032
UGCUGGGGCUGCAUGAUUUUUGCCCUGCGUC	chr6:33161303-33161549(-)$1	246	83	114	25.5405
GGGAAAAGAUAUUAACAUCACGUCUUUGUCU	chr6:43753934-43754166(+)$1	232	136	167	24.1667
AAUUUCAAAUGGAAUAGAGUAUUUUGAUAUU	chr1:42642298-42642567(-)$1	269	25	56	26.2181
UUUUCCCCAGAACAUUGUAGAUGGGGGUUGG	chr2:234379900-234380165(+)$1	265	68	99	25.6672
GGCAGGGGCCCUGCCUUCAAACCCCGGCCCC	chr16:30016750-30016999(+)$1	249	180	211	24.8937
GCUGAGCUUUAUCAUAUCAUCAGCAGCAACC	chr14:24612503-24612731(-)$1	228	33	64	24.8297

#DB
((((((((((...........)))))).)))	chr6:43753967-43754183(+)$1	1	103	134	24.1667
(((((((((............)))))).)))	chr15:73852665-73852910(-)$1	1	214	245	25.9745
(((((.((..............)).))))).	chr2:70508161-70508405(+)$1	1	8	39	22.4306
(((.(((((.............)))))..))	chr3:132361420-132361656(-)$1	1	138	169	25.2974
..((..((((...........))))..))))	chr9:131152640-131152898(+)$1	1	150	181	22.5454
((((..(((............)))..))).)	chr13:24249908-24250216(+)$1	1	203	234	25.8030
.((((((..............))).))).))	chr1:25568763-25569047(-)$1	1	134	165	24.2548
(((.((((((...........))))))))))	chr7:56078670-56079005(-)$1	1	102	133	23.4875
(.(((.((((...........)))).)))..	chr20:25433462-25433763(-)$1	1	228	259	24.3159
(.(((((((..............))))))).	chr9:117069913-117070157(+)$1	1	170	201	25.3647
(((((((((............))).))))))	chr1:234742452-234742772(-)$1	1	195	226	25.5685
(.((((((..............)))))).))	chr8:17427682-17427956(+)$1	1	167	198	25.1741
((.(.((((............))))).))))	chr20:60757261-60757543(+)$1	1	243	274	24.4524
(((((((((.............)))))))))	chr3:183862658-183862947(+)$1	1	73	104	26.3715
((((((((.(...........))))))..))	chr16:2821251-2821487(+)$1	1	46	77	24.5094
(...(((((............))))).....	chr6:90352757-90353042(-)$1	1	177	208	23.3546
(((((((((............))))))))).	chr4:123283651-123283979(+)$1	1	223	254	26.0612
((((((((((...........))))).))))	chr2:70438798-70439029(-)$1	1	42	73	24.8265
...(((((.............)))))...))	chr19:55692666-55692952(-)$1	1	56	87	25.7856
((((((((((...........)).)))).))	chr1:234742303-234742558(-)$1	1	94	125	23.2840
((((((((.............))))))))..	chr16:67918125-67918344(+)$1	1	21	52	23.0944
(((.(((((..............))))))))	chr15:34818859-34819162(-)$1	1	249	280	24.3512
((..((((((...........))))))..))	chr17:79524141-79524422(-)$1	1	79	110	24.8429
(..((((((...........))))))..)))	chr2:98272929-98273204(-)$1	1	96	127	23.0316
..(((.(((............))).)))...	chr1:55532031-55532341(-)$1	1	186	217	26.2097
(((((((((.............)))))))))	chr5:59892812-59893149(-)$1	1	148	179	26.3715
(.(((((((.............))))))...	chr19:19469235-19469623(+)$1	1	280	311	25.8596
..(((((((................))))))	chr2:160624786-160625155(+)$1	1	124	155	22.6571
((((((((((...........)).)))).))	chr1:234742358-234742570(-)$1	1	106	137	23.2840
(.(((.((((...........)))).)))..	chr20:25433360-25433662(-)$1	1	127	158	24.3159
(((((((..............))))))).))	chr2:70438524-70438732(-)$1	1	126	157	24.3776
(((((((((.............)))))))))	chr17:40465254-40465500(-)$1	1	40	71	26.8072
(.(((((((............))))))).).	chr14:24910313-24910580(+)$1	1	190	221	25.6245
((((..((((...........))))..))).	chr21:35275684-35275951(-)$1	1	36	67	23.6662
(((...(((.............)))...)))	chr15:79214026-79214310(-)$1	1	218	249	26.0889
(((((((..............))))))).))	chr2:70438456-70438724(-)$1	1	118	149	24.3776
(.(((((((................))))))	chr1:185266849-185267115(-)$1	1	135	166	22.8071
((((.(((.............))).))))((	chr6:132211741-132212017(+)$1	1	151	182	24.7200
((.((((((............))))))))))	chr20:25206717-25206999(+)$1	1	212	243	25.4149
.(((((((..............))))))).)	chr14:23528055-23528296(-)$1	1	144	175	22.3902
...(((((.............)))))...))	chr11:62283739-62283985(-)$1	1	7	38	26.0534
(((((((((............)))))).)))	chr17:8062568-8062846(-)$1	1	165	196	26.2398
(((((.(((.............)))))))).	chrX:70795448-70795703(+)$1	1	189	220	25.5812
....(..((.............))..)...)	chr22:29696253-29696541(+)$1	1	88	119	23.8797
(.(((((((...............)))))))	chr1:1322401-1322648(-)$1	1	192	223	20.1311
..(((((((............))).))))..	chr2:27422373-27422636(-)$1	1	40	71	24.7236
((((((((..............))))))..)	chr20:52183787-52184053(-)$1	1	222	253	24.3220
(((((.(((..............))).))))	chr10:121334879-121335175(-)$1	1	188	219	24.0345
((.((((((............)))))).)))	chr19:18499850-18500081(+)$1	1	88	119	26.0427
((((((((((...........))))))))))	chr7:150070922-150071200(+)$1	1	126	157	25.4654
(.(((((................))))).))	chr19:14589058-14589357(-)$1	1	135	166	22.6122
)((((((..............))))))((((	chr17:45700436-45700685(+)$1	1	145	176	24.2032
(((.(((((............)))))))).)	chr6:33161303-33161549(-)$1	1	83	114	25.5405
((((((((((...........)))))).)))	chr6:43753934-43754166(+)$1	1	136	167	24.1667
(((.(((((.............))))).)))	chr1:42642298-42642567(-)$1	1	25	56	26.2181
)))))((((............))))((((((	chr2:234379900-234380165(+)$1	1	68	99	25.6672
(((.((((.............)))).)))))	chr16:30016750-30016999(+)$1	1	180	211	24.8937
(.((.(((.............)))..)).))	chr14:24612503-24612731(-)$1	1	33	64	24.8297

#PSSM
c : 0.20	e : 0.18	g : 0.13	d : 0.06	= : 0.06	f : 0.05	i : 0.05	! : 0.03	b : 0.03	$ : 0.03	" : 0.03	[ : 0.01	# : 0.01	h : 0.01	a : 0.01	: : 0.01	
[ : 0.17	c : 0.15	g : 0.15	e : 0.13	f : 0.06	! : 0.05	i : 0.05	" : 0.05	= : 0.05	d : 0.03	$ : 0.03	# : 0.01	h : 0.01	
g : 0.22	c : 0.18	e : 0.12	f : 0.08	d : 0.05	[ : 0.05	i : 0.05	= : 0.05	b : 0.03	" : 0.03	! : 0.03	# : 0.01	h : 0.01	a : 0.01	$ : 0.01	
g : 0.18	f : 0.17	e : 0.15	[ : 0.10	c : 0.10	i : 0.05	= : 0.05	b : 0.03	" : 0.03	d : 0.03	a : 0.01	h : 0.01	! : 0.01	$ : 0.01	
f : 0.24	e : 0.20	g : 0.15	c : 0.06	d : 0.06	! : 0.05	[ : 0.05	i : 0.05	= : 0.05	h : 0.01	" : 0.01	a : 0.01	
f : 0.24	e : 0.17	g : 0.13	[ : 0.10	d : 0.10	! : 0.06	c : 0.05	i : 0.05	= : 0.03	h : 0.01	" : 0.01	
f : 0.22	e : 0.17	c : 0.17	d : 0.15	g : 0.13	i : 0.05	= : 0.03	b : 0.01	h : 0.01	! : 0.01	
f : 0.20	e : 0.15	d : 0.15	c : 0.15	g : 0.10	w : 0.06	i : 0.05	b : 0.03	= : 0.03	h : 0.01	y : 0.01	
f : 0.17	w : 0.13	c : 0.12	e : 0.10	d : 0.10	v : 0.10	g : 0.08	i : 0.05	b : 0.05	= : 0.03	[ : 0.01	y : 0.01	
v : 0.25	u : 0.24	w : 0.18	f : 0.06	d : 0.06	y : 0.05	b : 0.03	a : 0.01	e : 0.01	t : 0.01	x : 0.01	= : 0.01	
v : 0.25	t : 0.24	u : 0.24	w : 0.18	y : 0.05	x : 0.01	
v : 0.25	t : 0.24	u : 0.24	w : 0.18	y : 0.05	x : 0.01	
v : 0.25	t : 0.24	u : 0.24	w : 0.18	y : 0.05	x : 0.01	
v : 0.25	t : 0.24	u : 0.24	w : 0.18	y : 0.05	x : 0.01	
v : 0.25	t : 0.24	u : 0.24	w : 0.18	y : 0.05	x : 0.01	
v : 0.25	t : 0.24	u : 0.24	w : 0.18	y : 0.05	x : 0.01	
v : 0.25	t : 0.24	u : 0.24	w : 0.18	y : 0.05	x : 0.01	
v : 0.25	t : 0.24	u : 0.24	w : 0.18	y : 0.05	x : 0.01	
v : 0.25	t : 0.24	u : 0.24	w : 0.18	y : 0.05	x : 0.01	
v : 0.25	t : 0.24	u : 0.24	w : 0.18	y : 0.05	x : 0.01	
v : 0.25	u : 0.24	t : 0.22	w : 0.18	y : 0.05	f : 0.01	x : 0.01	
f : 0.17	v : 0.15	w : 0.12	d : 0.12	c : 0.12	e : 0.08	y : 0.05	g : 0.05	b : 0.03	a : 0.01	i : 0.01	h : 0.01	x : 0.01	= : 0.01	
f : 0.22	c : 0.15	e : 0.13	d : 0.12	b : 0.06	g : 0.06	w : 0.05	i : 0.05	y : 0.05	= : 0.03	h : 0.01	x : 0.01	
f : 0.22	e : 0.17	c : 0.17	d : 0.12	g : 0.08	i : 0.05	b : 0.03	] : 0.03	y : 0.03	= : 0.03	h : 0.01	x : 0.01	
f : 0.22	e : 0.17	d : 0.15	] : 0.10	g : 0.10	2 : 0.05	i : 0.05	c : 0.05	y : 0.03	= : 0.03	h : 0.01	
f : 0.24	e : 0.20	g : 0.15	2 : 0.08	d : 0.06	c : 0.05	] : 0.05	i : 0.05	= : 0.03	a : 0.01	h : 0.01	3 : 0.01	
f : 0.22	g : 0.15	e : 0.12	c : 0.12	d : 0.06	2 : 0.05	] : 0.05	i : 0.05	3 : 0.05	= : 0.03	8 : 0.01	h : 0.01	a : 0.01	b : 0.01	
g : 0.17	c : 0.13	] : 0.10	e : 0.10	d : 0.08	f : 0.08	2 : 0.06	i : 0.06	3 : 0.06	b : 0.03	= : 0.03	8 : 0.01	h : 0.01	
c : 0.17	] : 0.15	g : 0.15	e : 0.10	2 : 0.06	i : 0.06	3 : 0.06	d : 0.05	b : 0.03	f : 0.03	= : 0.03	8 : 0.01	h : 0.01	4 : 0.01	
g : 0.18	c : 0.15	e : 0.13	f : 0.10	3 : 0.08	i : 0.06	b : 0.05	= : 0.05	] : 0.03	2 : 0.03	d : 0.01	8 : 0.01	4 : 0.01	a : 0.01	: : 0.01	
g : 0.17	c : 0.15	e : 0.13	f : 0.10	3 : 0.08	i : 0.05	= : 0.05	: : 0.03	d : 0.03	2 : 0.03	b : 0.03	] : 0.03	8 : 0.01	4 : 0.01	E : 0.01	h : 0.01	

#score	1427.9278786326245
#seq	58
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF304YLR_TBRG4_transcript_m2_run2.txt

#BEAR
fffffwwwwwwwwwwwwwwfff	chrM:10194-10408(+)$1	214	122	144	18.6734
iiiyyyyyyyyyyyyyyyyiii	chrM:6475-6684(+)$1	209	156	178	23.6194
^^^^^^^^^^^^^^^^^^^ccc	chrM:15392-15603(+)$1	211	110	132	21.5567
iiiyyyyyyyyyyyyyyyyiii	chrM:6514-6735(+)$1	221	117	139	23.6194
!ffffffuuuuuuuuuuuufff	chrM:5324-5599(+)$1	275	235	257	16.7548
eeeuuuuuuuuuuuueeeee]c	chrM:10173-10380(+)$1	207	130	152	17.5923
iiiyyyyyyyyyyyyyyyyiii	chrM:6484-6705(+)$1	221	147	169	23.6194
iiiyyyyyyyyyyyyyyyyiii	chrM:6584-6793(+)$1	209	47	69	23.6194
^^^^^^^^^^^^^^^^^^^ccc	chrM:13608-13840(+)$1	232	126	148	21.5567
e^^^^^^^^^^^^^^^^^^eee	chrM:8405-8637(+)$1	232	191	213	21.7143
e^^^^^^^^^^^^^^^^^^eee	chrM:8440-8658(+)$1	218	156	178	21.7143
eeeuuuuuuuuuuuueeeee]c	chrM:10180-10387(+)$1	207	123	145	17.5923
e^^^^^^^^^^^^^^^^^^eee	chrM:8437-8640(+)$1	203	159	181	21.7143
fffffuuuuuuuuuuuufffff	chrM:7910-8119(+)$1	209	163	185	17.1909
e^^^^^^^^^^^^^^^^^^eee	chrM:8584-8794(+)$1	210	12	34	21.7143
e^^^^^^^^^^^^^^^^^^eee	chrM:8544-8784(+)$1	240	52	74	21.7143
ccc^^^^^^^^^^^^^^^^^^c	chrM:8510-8744(+)$1	234	165	187	21.5612
fff^^^^^^^^^^^^^^^^^^^	chrM:13398-13610(+)$1	212	103	125	21.2039
!!ccc^^^^^^^^^^^^^^^^^	chrM:10791-10995(+)$1	204	62	84	20.1375
ddduuuuuuuuuuuudddd333	chrM:13437-13679(+)$1	242	142	164	16.9806
fff^^^^^^^^^^^^^^^^^^^	chrM:4819-5046(+)$1	227	185	207	21.2039
eeeeewwwwwwwwwwwwwweee	chrM:11298-11517(+)$1	219	175	197	19.6095
ddddddduuuuuuuuuuuuddd	chrM:14969-15216(+)$1	247	3	25	17.0895
dddyyyyyyyyyyyyyyyyddd	chrM:11657-11868(+)$1	211	34	56	23.3788
!!ccc^^^^^^^^^^^^^^^^^	chrM:10782-10990(+)$1	208	71	93	20.1375
c[cccwwwwwwwwwwwwwwccc	chr5:134263533-134263776(-)$1	243	17	39	19.9368
^^^^^^^^^^^^^^^^^^^ccc	chrM:13947-14170(+)$1	223	73	95	21.5567
eeeeewwwwwwwwwwwwwweee	chrM:9506-9728(+)$1	222	15	37	19.6095
dddavvvvvvvvvvvvva]ddd	chr5:134262633-134262925(-)$1	292	130	152	18.2174
^^^^^^^^^^^^^^^^^^^ccc	chrM:10710-10950(+)$1	240	23	45	21.5567
cccyyyyyyyyyyyyyyyyccc	chrM:1431-1655(+)$1	224	84	106	23.8593
e[axxxxxxxxxxxxxxxaeee	chrM:15425-15658(+)$1	233	73	95	21.1829
:ddddvvvvvvvvvvvvvdddd	chrM:4846-5085(+)$1	239	166	188	16.6230
eeeeewwwwwwwwwwwwwweee	chrM:11293-11498(+)$1	205	180	202	19.6095
eeeuuuuuuuuuuuueeeee]c	chrM:10209-10429(+)$1	220	94	116	17.5923
iiiyyyyyyyyyyyyyyyyiii	chrM:6535-6761(+)$1	226	96	118	23.6194
[cccxxxxxxxxxxxxxxxccc	chrM:9033-9282(+)$1	249	126	148	20.9129
cccyyyyyyyyyyyyyyyyccc	chrM:1455-1662(+)$1	207	60	82	23.8593
fff^^^^^^^^^^^^^^^^^^^	chrM:13393-13598(+)$1	205	108	130	21.2039
ee[bb^^^^^^^^^^^^^^^^^	chrM:11032-11262(+)$1	230	63	85	19.5562
iiiyyyyyyyyyyyyyyyyiii	chrM:6564-6772(+)$1	208	67	89	23.6194
dddzzzzzzzzzzzzzzzzzdd	chrM:10146-10373(+)$1	227	29	51	18.3417
[ddddwwwwwwwwwwwwwwddd	chrM:13375-13593(+)$1	218	179	201	19.2344
e[axxxxxxxxxxxxxxxaeee	chrM:15404-15625(+)$1	221	94	116	21.1829
!!ccc^^^^^^^^^^^^^^^^^	chrM:10795-11002(+)$1	207	58	80	20.1375
e^^^^^^^^^^^^^^^^^^eee	chr1:568952-569203(+)$1	251	192	214	21.7143
cccyyyyyyyyyyyyyyyyccc	chr1:567806-568096(+)$1	290	165	187	23.8593
!!ccc^^^^^^^^^^^^^^^^^	chrM:10803-11027(+)$1	224	50	72	20.1375
eeeuuuuuuuuuuuueeeee]c	chrM:10131-10346(+)$1	215	172	194	17.5923
iiiyyyyyyyyyyyyyyyyiii	chrM:6439-6675(+)$1	236	192	214	23.6194
:ddddvvvvvvvvvvvvvdddd	chrM:10187-10394(+)$1	207	54	76	16.6230

#otherMatches

#Seq PSSM
AAUAGUUAUGUCAUCCCUCUUA	chrM:10194-10408(+)$1	214	122	144	18.6734
UUUAUAUUCUUAUCCUACCAGG	chrM:6475-6684(+)$1	209	156	178	23.6194
CCCAGACAAUUAUACCCUAGCC	chrM:15392-15603(+)$1	211	110	132	21.5567
UUUAUAUUCUUAUCCUACCAGG	chrM:6514-6735(+)$1	221	117	139	23.6194
AGUUGCAAUACUUAAUUUCUGC	chrM:5324-5599(+)$1	275	235	257	16.7548
CUAACCUGCCACUAAUAGUUAU	chrM:10173-10380(+)$1	207	130	152	17.5923
UUUAUAUUCUUAUCCUACCAGG	chrM:6484-6705(+)$1	221	147	169	23.6194
UUUAUAUUCUUAUCCUACCAGG	chrM:6584-6793(+)$1	209	47	69	23.6194
UCUCAUUACUAACAACAUUUCC	chrM:13608-13840(+)$1	232	126	148	21.5567
AUUCUAUUUCCCCCUCUAUUGA	chrM:8405-8637(+)$1	232	191	213	21.7143
AUUCUAUUUCCCCCUCUAUUGA	chrM:8440-8658(+)$1	218	156	178	21.7143
CUAACCUGCCACUAAUAGUUAU	chrM:10180-10387(+)$1	207	123	145	17.5923
AUUCUAUUUCCCCCUCUAUUGA	chrM:8437-8640(+)$1	203	159	181	21.7143
GAGCUGUCCCCACAUUAGGCUU	chrM:7910-8119(+)$1	209	163	185	17.1909
AUUCUAUUUCCCCCUCUAUUGA	chrM:8584-8794(+)$1	210	12	34	21.7143
AUUCUAUUUCCCCCUCUAUUGA	chrM:8544-8784(+)$1	240	52	74	21.7143
UCAAACUAACCUCAAAACAAAU	chrM:8510-8744(+)$1	234	165	187	21.5612
UUCUACUCCAAAGACCACAUCA	chrM:13398-13610(+)$1	212	103	125	21.2039
CUAAUUAUUAGCAUCAUCCCCC	chrM:10791-10995(+)$1	204	62	84	20.1375
GCUACCUCCCUGACAAGCGCCU	chrM:13437-13679(+)$1	242	142	164	16.9806
UUAGCAUACUCCUCAAUUACCC	chrM:4819-5046(+)$1	227	185	207	21.2039
AGGCGGCUAUGGUAUAAUACGC	chrM:11298-11517(+)$1	219	175	197	19.6095
GGCUGAAUCAUCCGCUACCUUC	chrM:14969-15216(+)$1	247	3	25	17.0895
GCGCAGUCAUUCUCAUAAUCGC	chrM:11657-11868(+)$1	211	34	56	23.3788
CUAAUUAUUAGCAUCAUCCCCC	chrM:10782-10990(+)$1	208	71	93	20.1375
CCUAGACUACGUACAUAACCUA	chr5:134263533-134263776(-)$1	243	17	39	19.9368
UUACCUAAAACAAUUUCACAGC	chrM:13947-14170(+)$1	223	73	95	21.5567
CCUAGCCCCUACCCCCCAACUA	chrM:9506-9728(+)$1	222	15	37	19.6095
GCGCAGUCAUUCUCAUAGUCGC	chr5:134262633-134262925(-)$1	292	130	152	18.2174
CUACGUACAUAACCUAAACCUA	chrM:10710-10950(+)$1	240	23	45	21.5567
AGGACAUUUAACUAAAACCCCU	chrM:1431-1655(+)$1	224	84	106	23.8593
GCGACCCAGACAAUUAUACCCU	chrM:15425-15658(+)$1	233	73	95	21.1829
CUCCUCAAUUACCCACAUAGGA	chrM:4846-5085(+)$1	239	166	188	16.6230
AGGCGGCUAUGGUAUAAUACGC	chrM:11293-11498(+)$1	205	180	202	19.6095
CUAACCUGCCACUAAUAGUUAU	chrM:10209-10429(+)$1	220	94	116	17.5923
UUUAUAUUCUUAUCCUACCAGG	chrM:6535-6761(+)$1	226	96	118	23.6194
CUACGUUUUCACACUUCUAGUA	chrM:9033-9282(+)$1	249	126	148	20.9129
AGGACAUUUAACUAAAACCCCU	chrM:1455-1662(+)$1	207	60	82	23.8593
UUCUACUCCAAAGACCACAUCA	chrM:13393-13598(+)$1	205	108	130	21.2039
CACAGAACUAAUCAUAUUUUAU	chrM:11032-11262(+)$1	230	63	85	19.5562
UUUAUAUUCUUAUCCUACCAGG	chrM:6564-6772(+)$1	208	67	89	23.6194
CGGCUUCGACCCUAUAUCCCCC	chrM:10146-10373(+)$1	227	29	51	18.3417
CUGAGCCCUAUCUAUUACUCUC	chrM:13375-13593(+)$1	218	179	201	19.2344
GCGACCCAGACAAUUAUACCCU	chrM:15404-15625(+)$1	221	94	116	21.1829
CUAAUUAUUAGCAUCAUCCCCC	chrM:10795-11002(+)$1	207	58	80	20.1375
AUUCUAUUUCCCCCUCUAUUGA	chr1:568952-569203(+)$1	251	192	214	21.7143
AGAACCCGUAUACAUAAAAUCU	chr1:567806-568096(+)$1	290	165	187	23.8593
CUAAUUAUUAGCAUCAUCCCCC	chrM:10803-11027(+)$1	224	50	72	20.1375
CUAACCUGCCACUAAUAGUUAU	chrM:10131-10346(+)$1	215	172	194	17.5923
UUUAUAUUCUUAUCCUACCAGG	chrM:6439-6675(+)$1	236	192	214	23.6194
CUUCUUAUUAUUUGAUCUAGAA	chrM:10187-10394(+)$1	207	54	76	16.6230

#DB
(((((..............)))	chrM:10194-10408(+)$1	1	122	144	18.6734
(((................)))	chrM:6475-6684(+)$1	1	156	178	23.6194
...................)))	chrM:15392-15603(+)$1	1	110	132	21.5567
(((................)))	chrM:6514-6735(+)$1	1	117	139	23.6194
.((((((............)))	chrM:5324-5599(+)$1	1	235	257	16.7548
(((............))))).)	chrM:10173-10380(+)$1	1	130	152	17.5923
(((................)))	chrM:6484-6705(+)$1	1	147	169	23.6194
(((................)))	chrM:6584-6793(+)$1	1	47	69	23.6194
...................)))	chrM:13608-13840(+)$1	1	126	148	21.5567
(..................)))	chrM:8405-8637(+)$1	1	191	213	21.7143
(..................)))	chrM:8440-8658(+)$1	1	156	178	21.7143
(((............))))).)	chrM:10180-10387(+)$1	1	123	145	17.5923
(..................)))	chrM:8437-8640(+)$1	1	159	181	21.7143
(((((............)))))	chrM:7910-8119(+)$1	1	163	185	17.1909
(..................)))	chrM:8584-8794(+)$1	1	12	34	21.7143
(..................)))	chrM:8544-8784(+)$1	1	52	74	21.7143
(((..................)	chrM:8510-8744(+)$1	1	165	187	21.5612
(((...................	chrM:13398-13610(+)$1	1	103	125	21.2039
..(((.................	chrM:10791-10995(+)$1	1	62	84	20.1375
(((............))))...	chrM:13437-13679(+)$1	1	142	164	16.9806
(((...................	chrM:4819-5046(+)$1	1	185	207	21.2039
(((((..............)))	chrM:11298-11517(+)$1	1	175	197	19.6095
(((((((............)))	chrM:14969-15216(+)$1	1	3	25	17.0895
(((................)))	chrM:11657-11868(+)$1	1	34	56	23.3788
..(((.................	chrM:10782-10990(+)$1	1	71	93	20.1375
(.(((..............)))	chr5:134263533-134263776(-)$1	1	17	39	19.9368
...................)))	chrM:13947-14170(+)$1	1	73	95	21.5567
(((((..............)))	chrM:9506-9728(+)$1	1	15	37	19.6095
((((.............).)))	chr5:134262633-134262925(-)$1	1	130	152	18.2174
...................)))	chrM:10710-10950(+)$1	1	23	45	21.5567
(((................)))	chrM:1431-1655(+)$1	1	84	106	23.8593
(.(...............))))	chrM:15425-15658(+)$1	1	73	95	21.1829
.((((.............))))	chrM:4846-5085(+)$1	1	166	188	16.6230
(((((..............)))	chrM:11293-11498(+)$1	1	180	202	19.6095
(((............))))).)	chrM:10209-10429(+)$1	1	94	116	17.5923
(((................)))	chrM:6535-6761(+)$1	1	96	118	23.6194
.(((...............)))	chrM:9033-9282(+)$1	1	126	148	20.9129
(((................)))	chrM:1455-1662(+)$1	1	60	82	23.8593
(((...................	chrM:13393-13598(+)$1	1	108	130	21.2039
((.((.................	chrM:11032-11262(+)$1	1	63	85	19.5562
(((................)))	chrM:6564-6772(+)$1	1	67	89	23.6194
(((.................))	chrM:10146-10373(+)$1	1	29	51	18.3417
.((((..............)))	chrM:13375-13593(+)$1	1	179	201	19.2344
(.(...............))))	chrM:15404-15625(+)$1	1	94	116	21.1829
..(((.................	chrM:10795-11002(+)$1	1	58	80	20.1375
(..................)))	chr1:568952-569203(+)$1	1	192	214	21.7143
(((................)))	chr1:567806-568096(+)$1	1	165	187	23.8593
..(((.................	chrM:10803-11027(+)$1	1	50	72	20.1375
(((............))))).)	chrM:10131-10346(+)$1	1	172	194	17.5923
(((................)))	chrM:6439-6675(+)$1	1	192	214	23.6194
.((((.............))))	chrM:10187-10394(+)$1	1	54	76	16.6230

#PSSM
e : 0.31	i : 0.13	f : 0.09	! : 0.09	c : 0.09	d : 0.09	^ : 0.07	: : 0.03	[ : 0.03	
^ : 0.19	e : 0.15	d : 0.15	i : 0.13	f : 0.11	c : 0.09	! : 0.07	[ : 0.05	
^ : 0.19	c : 0.19	d : 0.15	i : 0.13	e : 0.13	f : 0.11	a : 0.03	[ : 0.01	
^ : 0.27	y : 0.21	c : 0.11	u : 0.09	d : 0.07	f : 0.05	e : 0.05	x : 0.03	a : 0.01	b : 0.01	z : 0.01	
^ : 0.27	y : 0.21	u : 0.09	c : 0.09	d : 0.07	f : 0.05	e : 0.05	x : 0.05	v : 0.01	b : 0.01	z : 0.01	
^ : 0.37	y : 0.21	w : 0.11	u : 0.11	v : 0.05	x : 0.05	f : 0.01	d : 0.01	z : 0.01	
^ : 0.37	y : 0.21	w : 0.11	u : 0.11	v : 0.05	x : 0.05	f : 0.01	d : 0.01	z : 0.01	
^ : 0.37	y : 0.21	u : 0.15	w : 0.11	v : 0.05	x : 0.05	z : 0.01	
^ : 0.37	y : 0.21	u : 0.15	w : 0.11	v : 0.05	x : 0.05	z : 0.01	
^ : 0.37	y : 0.21	u : 0.15	w : 0.11	v : 0.05	x : 0.05	z : 0.01	
^ : 0.37	y : 0.21	u : 0.15	w : 0.11	v : 0.05	x : 0.05	z : 0.01	
^ : 0.37	y : 0.21	u : 0.15	w : 0.11	v : 0.05	x : 0.05	z : 0.01	
^ : 0.37	y : 0.21	u : 0.15	w : 0.11	v : 0.05	x : 0.05	z : 0.01	
^ : 0.37	y : 0.21	u : 0.15	w : 0.11	v : 0.05	x : 0.05	z : 0.01	
^ : 0.37	y : 0.21	u : 0.15	w : 0.11	v : 0.05	x : 0.05	z : 0.01	
^ : 0.37	y : 0.21	w : 0.11	e : 0.07	u : 0.05	v : 0.05	x : 0.05	d : 0.01	z : 0.01	
^ : 0.37	y : 0.21	w : 0.11	e : 0.07	u : 0.05	v : 0.05	x : 0.05	d : 0.01	z : 0.01	
^ : 0.37	y : 0.21	w : 0.11	e : 0.07	x : 0.05	u : 0.03	v : 0.03	f : 0.01	d : 0.01	a : 0.01	z : 0.01	
^ : 0.37	y : 0.21	w : 0.11	e : 0.07	d : 0.05	u : 0.03	a : 0.03	f : 0.01	] : 0.01	x : 0.01	z : 0.01	
e : 0.29	c : 0.17	^ : 0.17	i : 0.13	d : 0.11	f : 0.05	3 : 0.01	z : 0.01	
e : 0.21	c : 0.17	^ : 0.17	i : 0.13	d : 0.13	] : 0.07	f : 0.05	3 : 0.01	
c : 0.27	e : 0.21	^ : 0.15	i : 0.13	d : 0.13	f : 0.05	3 : 0.01	

#score	1050.2287894978588
#seq	51
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_transcript_m1_run2.txt

#BEAR
=======333eeeeecccnnnnnccc===========[	chrX:133063349-133063602(-)$1	253	125	163	15.8596
[iiiiiiiii####cccooooooccc333iiiiiiiii	chr14:70238176-70238445(+)$1	269	171	209	17.0248
hdddd####ccc[cccbboooooobb22ccc]ccc333	chr20:32247183-32247462(-)$1	279	228	266	13.6705
ffff[ccc[aeeeeecccnnnnnccc]eeeee22a]cc	chr16:22337033-22337349(+)$1	316	159	197	14.6449
dddd####dddd####cccmmmmccc4444dddd4444	chr3:48670808-48671020(-)$1	212	86	124	11.0587
cc!!dddd[a"""ccc[annnnna]ccca]dddd]ccc	chr2:70056989-70057298(+)$1	309	122	160	14.7852
dd####ccc!!bbeeeeennnnneeeee]bb]cccddd	chr6:117923173-117923507(-)$1	334	51	89	13.2472
fffffccc!!eeeee[bbnnnnnbb]eeeee]ccc]ff	chr2:232576587-232576794(+)$1	207	87	125	12.8745
::==========!!cccooooooccc4444========	chr14:23450739-23450992(-)$1	253	211	249	14.9643
[ffffff!!ccc[eeeeennnnneeeee]ccc]fffff	chr6:41518701-41519049(+)$1	348	123	161	13.3203
ii[ccc!!bbccc[ddddnnnnndddd]ccc]bb4444	chr20:61542662-61542954(-)$1	292	182	220	15.3309
CC{Aiiiiiiiii!!cccnnnnnccc333iiiiiiiii	chr8:143389705-143390041(-)$1	336	211	249	14.3839
Fiiiiiiiiiccc!!ddddllldddd22ccc22iiiii	chr21:46900512-46900730(+)$1	218	40	78	13.9420
eeea[a[ggggggg!!bbnnnnnbb]ggggggg]a]a:	chr6:33239892-33240148(+)$1	256	169	207	13.4921
===[ccc[dddd!!ddddnnnnndddd22dddd333cc	chr7:158349734-158350021(-)$1	287	13	51	15.2247
dddddddd[ccc"""ddddllldddd333ccc]dddd2	chr20:62313781-62314092(+)$1	311	174	212	12.0475
BBiiiiiiiii[a[cccooooooccc]a]iiiiiiiii	chr2:238645611-238645892(+)$1	281	37	75	14.2457
[ccc[a!!gggggggcccnnnnnccc22ggggggg22a	chr16:81551314-81551597(+)$1	283	5	43	16.7285
eeeee####dddd!!cccooooooccc]dddd22eeee	chr13:113497782-113498060(+)$1	278	35	73	12.3689
$$$ccc!!cccgggggggnnnnnggggggg]ccc333c	chr2:232576515-232576781(+)$1	266	57	95	14.7518
!!============[cccnnnnnccc333=========	chr22:46152877-46153188(+)$1	311	100	138	19.3520
ccc####bb!!gggggggooooooggggggg22bb333	chr9:100777544-100777790(+)$1	246	73	111	13.0678
dddd==========[ddddllldddd]==========F	chr12:26985932-26986192(-)$1	260	201	239	13.6445
33eeeee]cccccc[cccnnnnnccc]cccdddd[eee	chr3:32301146-32301453(+)$1	307	225	263	13.9469
gggggg$$$$$ddddcccnnnnnccc]dddd4444ggg	chr6:3320050-3320360(-)$1	310	216	254	14.9053
hhhhhh[ccc"""eeeeennnnneeeeeccc]hhhhhh	chr9:117037888-117038148(+)$1	260	26	64	13.5912
ccc[a[ccc"""ffffffnnnnnffffffccc]a]ccc	chr9:117052460-117052710(+)$1	250	39	77	14.4560
eeeeeeeee$$$$$cccooooooccc333eeeee]eee	chr2:11721759-11722007(+)$1	248	178	216	12.7989
fffffccc!!eeeee[bbnnnnnbb]eeeee]ccc]ff	chr2:232576581-232576787(+)$1	206	93	131	12.8745
$$$ccc"""ccc[eeeeennnnneeeee]ccc22ccc4	chr1:28832455-28832699(+)$1	244	83	121	14.0282
cc[ccc[ccc[cccddddnnnnndddd22cccccc]cc	chr2:138749639-138749918(+)$1	279	163	201	15.7410
eee[dddd[bb####cccnnnnnccc22bb]ddddeee	chr10:69834659-69834995(-)$1	336	159	197	14.3765
iiiiiii"""eeeee!!annnnna22eeeee]iiiiii	chr17:78777556-78777884(+)$1	328	65	103	15.0128
ccc[ccc[cccccc[cccmmmmccc4444ccc333ccc	chrX:18942408-18942679(-)$1	271	122	160	13.2526
cc!!cccbb$$$$$cccccclllccc]ccc4444bb]c	chr12:110025770-110026124(+)$1	354	256	294	12.5180
!!ggggggg"""ffffffooooooffffff4444gggg	chr2:27593044-27593302(-)$1	258	173	211	12.8580
iiiiiiii!!bb[ddddoooooodddd]bb]iiiiiii	chr14:35747709-35748024(+)$1	315	199	237	14.0145
==ggggggg!!ccc!!bboooooobb22cccggggggg	chr7:73011886-73012144(-)$1	258	70	108	14.4503
iiiiiii[bb[ccc[ddddllldddd]cccbb]iiiii	chr7:26233095-26233349(-)$1	254	26	64	12.9421
==========[a[ccc[bblllbbccca]=========	chrX:133063402-133063663(-)$1	261	154	192	13.9687
hhh####bb[ccc[ddddnnnnndddd]ccc]bbhhhh	chr22:45724175-45724400(+)$1	225	64	102	14.3774
dddd!!eeeee!!eeeeennnnneeeee333eeeee22	chr3:171992051-171992373(+)$1	322	54	92	12.9825
cc!!ccc[a[ccc[cccooooooccc]ccc]a]ccc22	chr7:65551630-65551907(+)$1	277	123	161	15.1899
obbdddd[a[ccc[ddddnnnnndddd]ccc]a]dddd	chr16:22019563-22019861(+)$1	298	147	185	13.9942
ggggg"""dddd####bbnnnnnbbdddd22ggggggg	chr7:158243478-158243825(-)$1	347	247	285	13.7277
eeee============[aooooooa]============	chr6:132147745-132148025(+)$1	280	229	267	14.9858
"""eeeee!!gggggggccclllccc]ggggggg22ee	chr2:201234640-201234955(+)$1	315	164	202	12.1859
ff"""dddd[dddd[cccnnnnnccc]dddd22dddd3	chr7:158198559-158198829(-)$1	270	195	233	13.9895
d$$$$$eeeee"""cccooooooccc333eeeee22dd	chr2:64227967-64228230(-)$1	263	35	73	12.6289
eee[dddd!!ccc!!cccnnnnnccc22ccc]dddd]e	chr17:6817599-6817854(+)$1	255	53	91	16.3239
ddd[ggggggg[bb[ddddllldddd22bb]ggggggg	chr16:89346553-89346829(-)$1	276	217	255	12.1945
bb!!ccc[ffffff[cccnnnnnccc22ffffffccc]	chr11:2667710-2668006(-)$1	296	164	202	14.8704
ggggggccc[ccc[cccccclllccc22ccc]cccccc	chr2:54197728-54198041(-)$1	313	151	189	14.4825
hhh####bb[ccc[ddddnnnnndddd]ccc]bbhhhh	chr22:45723787-45724045(+)$1	258	124	162	14.3774
[hhhhhhhhbb[ccccccnnnnnccc22ccc22bb]hh	chr20:62665805-62666108(+)$1	303	166	204	14.3875
cccggggggg"""ddddoooooodddd4444ggggggg	chr16:88562641-88562893(+)$1	252	13	51	14.3074
eeeggggggg!!ffffffnnnnnffffff22ggggggg	chr6:154831054-154831316(-)$1	262	176	214	13.6059
==[ccc!!==========nnnnn==========22ccc	chr16:89603638-89603942(+)$1	304	127	165	16.6075
iiiiiiiii"""bb[cccnnnnnccc]bb]iiiiiiii	chr8:129044390-129044701(+)$1	311	108	146	16.9982
ddd!!eeeee[gggggggnnnnnggggggg]eeeee33	chr11:2680278-2680554(-)$1	276	84	122	13.8222

#otherMatches

#Seq PSSM
UGGGUGAAAGGGUAGGGGUUUCUUCCUUUUCCAUUUUU	chrX:133063349-133063602(-)$1	253	125	163	15.8596
GUUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAA	chr14:70238176-70238445(+)$1	269	171	209	17.0248
GGGGCCGGUUGCCCACCAACCCUCUGCAGUGCGCAUGU	chr20:32247183-32247462(-)$1	279	228	266	13.6705
GGGUGCCUGCGGUCCCGCCCGGUGUGCGGAUCAAGGAG	chr16:22337033-22337349(+)$1	316	159	197	14.6449
CCCACCAGUGGCGGACCUGGUUGCAGUAAGGCCAAGAU	chr3:48670808-48671020(-)$1	212	86	124	11.0587
CGGAGGCCGGACACUGGAGACGAUGCGGCGGGCCACGG	chr2:70056989-70057298(+)$1	309	122	160	14.7852
GCGCCAUGUCGGCGGGCGGUCCAUGCCCAGCAGCAGCC	chr6:117923173-117923507(-)$1	334	51	89	13.2472
gaggaagaagaagGUGAUGGUGAGUAGCCUUGUCUAUC	chr2:232576587-232576794(+)$1	207	87	125	12.8745
CCCCGGCCCUGGGCAGCCCUGGAGCUCUAGCCGGGGCC	chr14:23450739-23450992(-)$1	253	211	249	14.9643
CCGGGAUCACAGCGGGAACCCUCUUUCCUCUGAAUUCU	chr6:41518701-41519049(+)$1	348	123	161	13.3203
GGGAGGCAGCCCAAGCGCACUGAGCGCGUGGAGCAGUU	chr20:61542662-61542954(-)$1	292	182	220	15.3309
aggugggugauucauucagagcuugauacggaucacuc	chr8:143389705-143390041(-)$1	336	211	249	14.3839
UGGUGGUCAUCCCUGGUGGGUGCCACAUGGGCUGUGAC	chr21:46900512-46900730(+)$1	218	40	78	13.9420
AGAGCGGGCCCGAGGAAGGGUCACUGCUCGGGCGCACG	chr6:33239892-33240148(+)$1	256	169	207	13.4921
GGGAGCGACCUGCCCAGGAGCGACCUGCACAGGAGCCG	chr7:158349734-158350021(-)$1	287	13	51	15.2247
GGAGGAUGAGGGACUGCACACAGUGCUCACCCGCGUUG	chr20:62313781-62314092(+)$1	311	174	212	12.0475
GGCCUGAGGUCCCAGCCCCAAGUGGUCGUGACCUCAGG	chr2:238645611-238645892(+)$1	281	37	75	14.2457
GACAAUGCCAGGGAAGUGGGAAACAUUUUUUCCUGAAG	chr16:81551314-81551597(+)$1	283	5	43	16.7285
GCUCUCCUCCCAGAGGUCCAAAAUGACGCUGGCCAGAG	chr13:113497782-113498060(+)$1	278	35	73	12.3689
UGACAUGGCCUGUUUUCUGUCGAGGAGAAUGAGGAAAA	chr2:232576515-232576781(+)$1	266	57	95	14.7518
ACCUGCAGCUCUGGACGGACUGCCUGGGGCUGGGGCUG	chr22:46152877-46153188(+)$1	311	100	138	19.3520
CCUAAAGUCAAUUUUUGUUACUGUACagaggaggaaga	chr9:100777544-100777790(+)$1	246	73	111	13.0678
CCUGCCGGGGAGGCGGCGGCGGCUGCGGCUUCUCUGGG	chr12:26985932-26986192(-)$1	260	201	239	13.6445
AAUGUGAAGGCCAGCCUGGAGAACAGCCUGAGGGAGGU	chr3:32301146-32301453(+)$1	307	225	263	13.9469
UGGAGCCUUGAAGUCUGCACCACGCAGGACUGUGUGUU	chr6:3320050-3320360(-)$1	310	216	254	14.9053
UCCCCUCUUCAUGCCCUGCCACCCAGGGGGACAGGGGA	chr9:117037888-117038148(+)$1	260	26	64	13.5912
CCAGGGCCUGCAGGGGCUGCCAGGGCCCCGGGGCGUGG	chr9:117052460-117052710(+)$1	250	39	77	14.4560
GGUCUCCAUGCUCCCACUCCACUGUGCUGGUGGAGGAU	chr2:11721759-11722007(+)$1	248	178	216	12.7989
gaggaagaagaagGUGAUGGUGAGUAGCCUUGUCUAUC	chr2:232576581-232576787(+)$1	206	93	131	12.8745
UUCGCGUUUUCUCUCUCCUUUUUGGAGACAGAUUCGCA	chr1:28832455-28832699(+)$1	244	83	121	14.0282
cugccugcugucaaagcuauuugagcuccuugugggag	chr2:138749639-138749918(+)$1	279	163	201	15.7410
UGGUGAUCGUCGCCACUGGCUGACAGAGGAGGGUCCCA	chr10:69834659-69834995(-)$1	336	159	197	14.3765
cuucuuugauugggcagccugaugaggcccaugaagag	chr17:78777556-78777884(+)$1	328	65	103	15.0128
CUGCUGGAGGAUGACGGGCAGACCCACACUCACCUUCC	chrX:18942408-18942679(-)$1	271	122	160	13.2526
ucgucagagagaagacaccugaaggguugugaagcugc	chr12:110025770-110026124(+)$1	354	256	294	12.5180
CCUACUGGUACGCGGAGCCGACGAGCUCCGGACAGCUA	chr2:27593044-27593302(-)$1	258	173	211	12.8580
GCAGGUCUUCGGAGAGGUAAGUCCCUCACUCAGACUUG	chr14:35747709-35748024(+)$1	315	199	237	14.0145
UCUCUGAGUGUCUGUCUGUCCCCCCAACCAGGCUCGGA	chr7:73011886-73012144(-)$1	258	70	108	14.4503
UUAUAAUAGGUGGCAAUUUUGGAGGUAGCCCCGGUUAU	chr7:26233095-26233349(-)$1	254	26	64	12.9421
UCACCUAGUCACUCUGUGGAUUCCCAGGAGGCUGGGUG	chrX:133063402-133063663(-)$1	261	154	192	13.9687
AUGGAGUCCCUGGACUUGAAGGACAAGACCAAGGUGUG	chr22:45724175-45724400(+)$1	225	64	102	14.3774
GCGGAUAGAUUUGUUUAUCUUAAGUAGAGUUGAUCUCC	chr3:171992051-171992373(+)$1	322	54	92	12.9825
ACUCUGAGCGGCUGCUGGAGGUGCGGAAGCGGAUCAAU	chr7:65551630-65551907(+)$1	277	123	161	15.1899
ACACCGGGGAGUCUGCGGGUGAGCCGCUggcgcgccgg	chr16:22019563-22019861(+)$1	298	147	185	13.9942
cugcggcugagguuucgcuccuugcccuccacgcagca	chr7:158243478-158243825(-)$1	347	247	285	13.7277
GCCUCCCUGUGUGGGGCAGAAAAGUUUCUCACAUAGGG	chr6:132147745-132148025(+)$1	280	229	267	14.9858
UUGCUCACCUGUGACUGUUGCUGCAGUCAGUCAUCUGU	chr2:201234640-201234955(+)$1	315	164	202	12.1859
GGGAUCUCAGUGUGCGGCCACGUGUCUCACGGAUGAGC	chr7:158198559-158198829(-)$1	270	195	233	13.9895
uauaauagaacaccagguagacuucuaagguuuuugac	chr2:64227967-64228230(-)$1	263	35	73	12.6289
ggcaaguuccgauuacagacuggcuggaauucagcucg	chr17:6817599-6817854(+)$1	255	53	91	16.3239
GCCAGGUGGAGCCGGUGCCCUGGGCGGACGCCUUCGCC	chr16:89346553-89346829(-)$1	276	217	255	12.1945
ugaagguugcagugagcagaaauugcaccauugcaccc	chr11:2667710-2668006(-)$1	296	164	202	14.8704
Agcccccggagccgggcgggcgucccgagccgggcccg	chr2:54197728-54198041(-)$1	313	151	189	14.4825
AUGGAGUCCCUGGACUUGAAGGACAAGACCAAGGUAUG	chr22:45723787-45724045(+)$1	258	124	162	14.3774
AGUUUCCUUUGAUCCCUCAUGGAGAGACGGAAGCAUGA	chr20:62665805-62666108(+)$1	303	166	204	14.3875
GCCCAGGAUGUGACAGCGGCGGGGCUGGCUUUAUCCUG	chr16:88562641-88562893(+)$1	252	13	51	14.3074
GGAGCUGGGGAAGAGGGUACUUGGCCCUUCCUCCCGGC	chr6:154831054-154831316(-)$1	262	176	214	13.6059
UGCUGGAAAGCGUUGAUGGGGAGCGUCGGCGCUGACCA	chr16:89603638-89603942(+)$1	304	127	165	16.6075
CAGCUCUGGAUCCUGACUGUGUGAGUGGGCCCAGGGCU	chr8:129044390-129044701(+)$1	311	108	146	16.9982
caggguauuuuuagggguauggaacuucugugaaugau	chr11:2680278-2680554(-)$1	276	84	122	13.8222

#DB
)))))))...)))))(((.....)))(((((((((((.	chrX:133063349-133063602(-)$1	1	125	163	15.8596
.(((((((((....(((......)))...)))))))))	chr14:70238176-70238445(+)$1	1	171	209	17.0248
)((((....(((.(((((......))..))).)))...	chr20:32247183-32247462(-)$1	1	228	266	13.6705
((((.(((.(((((((((.....))).)))))..).))	chr16:22337033-22337349(+)$1	1	159	197	14.6449
((((....((((....(((....)))....))))....	chr3:48670808-48671020(-)$1	1	86	124	11.0587
((..((((.(...(((.(.....).)))).)))).)))	chr2:70056989-70057298(+)$1	1	122	160	14.7852
((....(((..(((((((.....))))).)).))))))	chr6:117923173-117923507(-)$1	1	51	89	13.2472
((((((((..(((((.((.....)).))))).))).))	chr2:232576587-232576794(+)$1	1	87	125	12.8745
..((((((((((..(((......)))....))))))))	chr14:23450739-23450992(-)$1	1	211	249	14.9643
.((((((..(((.(((((.....))))).))).)))))	chr6:41518701-41519049(+)$1	1	123	161	13.3203
((.(((..(((((.((((.....)))).))).))....	chr20:61542662-61542954(-)$1	1	182	220	15.3309
((.((((((((((..(((.....)))...)))))))))	chr8:143389705-143390041(-)$1	1	211	249	14.3839
(((((((((((((..((((...))))..)))..)))))	chr21:46900512-46900730(+)$1	1	40	78	13.9420
)))(.(.(((((((..((.....)).))))))).).).	chr6:33239892-33240148(+)$1	1	169	207	13.4921
(((.(((.((((..((((.....))))..))))...))	chr7:158349734-158350021(-)$1	1	13	51	15.2247
((((((((.(((...((((...))))...))).)))).	chr20:62313781-62314092(+)$1	1	174	212	12.0475
(((((((((((.(.(((......))).).)))))))))	chr2:238645611-238645892(+)$1	1	37	75	14.2457
.(((.(..((((((((((.....)))..)))))))..)	chr16:81551314-81551597(+)$1	1	5	43	16.7285
(((((....((((..(((......))).))))..))))	chr13:113497782-113498060(+)$1	1	35	73	12.3689
...(((..((((((((((.....))))))).)))...)	chr2:232576515-232576781(+)$1	1	57	95	14.7518
..((((((((((((.(((.....)))...)))))))))	chr22:46152877-46153188(+)$1	1	100	138	19.3520
(((....((..(((((((......)))))))..))...	chr9:100777544-100777790(+)$1	1	73	111	13.0678
))))((((((((((.((((...)))).)))))))))))	chr12:26985932-26986192(-)$1	1	201	239	13.6445
..))))).)))(((.(((.....))).)))((((.(((	chr3:32301146-32301453(+)$1	1	225	263	13.9469
((((((.....(((((((.....))).))))....)))	chr6:3320050-3320360(-)$1	1	216	254	14.9053
((((((.(((...(((((.....)))))))).))))))	chr9:117037888-117038148(+)$1	1	26	64	13.5912
(((.(.(((...((((((.....))))))))).).)))	chr9:117052460-117052710(+)$1	1	39	77	14.4560
(((((((((.....(((......)))...))))).)))	chr2:11721759-11722007(+)$1	1	178	216	12.7989
((((((((..(((((.((.....)).))))).))).))	chr2:232576581-232576787(+)$1	1	93	131	12.8745
...(((...(((.(((((.....))))).)))..))).	chr1:28832455-28832699(+)$1	1	83	121	14.0282
((.(((.(((.(((((((.....))))..)))))).))	chr2:138749639-138749918(+)$1	1	163	201	15.7410
(((.((((.((....(((.....)))..)).)))))))	chr10:69834659-69834995(-)$1	1	159	197	14.3765
(((((((...(((((..(.....)..))))).))))))	chr17:78777556-78777884(+)$1	1	65	103	15.0128
(((.(((.((((((.(((....)))....)))...)))	chrX:18942408-18942679(-)$1	1	122	160	13.2526
((..(((((.....((((((...))).)))....)).)	chr12:110025770-110026124(+)$1	1	256	294	12.5180
..(((((((...((((((......))))))....))))	chr2:27593044-27593302(-)$1	1	173	211	12.8580
((((((((..((.((((......)))).)).)))))))	chr14:35747709-35748024(+)$1	1	199	237	14.0145
))(((((((..(((..((......))..))))))))))	chr7:73011886-73012144(-)$1	1	70	108	14.4503
(((((((.((.(((.((((...)))).))))).)))))	chr7:26233095-26233349(-)$1	1	26	64	12.9421
((((((((((.(.(((.((...)))))).)))))))))	chrX:133063402-133063663(-)$1	1	154	192	13.9687
(((....((.(((.((((.....)))).))).))))))	chr22:45724175-45724400(+)$1	1	64	102	14.3774
((((..(((((..(((((.....)))))...)))))..	chr3:171992051-171992373(+)$1	1	54	92	12.9825
((..(((.(.(((.(((......))).))).).)))..	chr7:65551630-65551907(+)$1	1	123	161	15.1899
.))((((.(.(((.((((.....)))).))).).))))	chr16:22019563-22019861(+)$1	1	147	185	13.9942
(((((...((((....((.....))))))..)))))))	chr7:158243478-158243825(-)$1	1	247	285	13.7277
((((((((((((((((.(......).))))))))))))	chr6:132147745-132148025(+)$1	1	229	267	14.9858
...(((((..((((((((((...))).)))))))..))	chr2:201234640-201234955(+)$1	1	164	202	12.1859
((...((((.((((.(((.....))).))))..)))).	chr7:158198559-158198829(-)$1	1	195	233	13.9895
(.....(((((...(((......)))...)))))..))	chr2:64227967-64228230(-)$1	1	35	73	12.6289
(((.((((..(((..(((.....)))..))).)))).)	chr17:6817599-6817854(+)$1	1	53	91	16.3239
(((.(((((((.((.((((...))))..)).)))))))	chr16:89346553-89346829(-)$1	1	217	255	12.1945
((..(((.((((((.(((.....)))..))))))))).	chr11:2667710-2668006(-)$1	1	164	202	14.8704
(((((((((.(((.((((((...)))..))).))))))	chr2:54197728-54198041(-)$1	1	151	189	14.4825
(((....((.(((.((((.....)))).))).))))))	chr22:45723787-45724045(+)$1	1	124	162	14.3774
.((((((((((.((((((.....)))..)))..)).))	chr20:62665805-62666108(+)$1	1	166	204	14.3875
)))(((((((...((((......))))....)))))))	chr16:88562641-88562893(+)$1	1	13	51	14.3074
)))(((((((..((((((.....))))))..)))))))	chr6:154831054-154831316(-)$1	1	176	214	13.6059
((.(((..((((((((((.....))))))))))..)))	chr16:89603638-89603942(+)$1	1	127	165	16.6075
(((((((((...((.(((.....))).)).))))))))	chr8:129044390-129044701(+)$1	1	108	146	16.9982
(((..(((((.(((((((.....))))))).)))))..	chr11:2680278-2680554(-)$1	1	84	122	13.8222

#PSSM
d : 0.13	c : 0.13	e : 0.11	= : 0.08	i : 0.08	[ : 0.06	h : 0.06	f : 0.06	g : 0.05	$ : 0.03	! : 0.03	: : 0.01	C : 0.01	F : 0.01	B : 0.01	3 : 0.01	o : 0.01	" : 0.01	b : 0.01	
c : 0.15	d : 0.13	i : 0.11	e : 0.11	= : 0.08	f : 0.08	h : 0.06	$ : 0.05	g : 0.05	! : 0.03	b : 0.03	: : 0.01	C : 0.01	B : 0.01	3 : 0.01	" : 0.01	
e : 0.13	i : 0.11	d : 0.11	= : 0.08	c : 0.08	g : 0.08	f : 0.06	! : 0.06	h : 0.06	[ : 0.05	$ : 0.05	" : 0.03	# : 0.01	{ : 0.01	b : 0.01	
i : 0.11	g : 0.11	d : 0.09	c : 0.09	[ : 0.09	! : 0.08	e : 0.08	= : 0.06	f : 0.06	# : 0.06	h : 0.03	A : 0.01	a : 0.01	" : 0.01	$ : 0.01	
c : 0.16	i : 0.13	g : 0.13	= : 0.09	d : 0.09	# : 0.08	e : 0.06	[ : 0.05	f : 0.05	h : 0.03	! : 0.03	a : 0.01	" : 0.01	$ : 0.01	
c : 0.21	i : 0.13	# : 0.11	g : 0.11	= : 0.09	d : 0.09	e : 0.06	a : 0.03	h : 0.03	f : 0.01	[ : 0.01	! : 0.01	" : 0.01	$ : 0.01	
c : 0.18	i : 0.13	= : 0.09	# : 0.09	d : 0.09	e : 0.09	g : 0.08	! : 0.06	[ : 0.05	" : 0.03	f : 0.01	$ : 0.01	h : 0.01	
c : 0.13	i : 0.09	g : 0.09	[ : 0.09	d : 0.08	= : 0.08	! : 0.08	e : 0.08	b : 0.06	# : 0.05	" : 0.05	3 : 0.01	] : 0.01	$ : 0.01	h : 0.01	
c : 0.13	g : 0.11	! : 0.09	= : 0.09	b : 0.09	i : 0.08	[ : 0.06	d : 0.06	e : 0.06	# : 0.03	" : 0.03	a : 0.03	3 : 0.01	$ : 0.01	f : 0.01	h : 0.01	
c : 0.15	! : 0.13	= : 0.09	[ : 0.09	g : 0.08	i : 0.06	d : 0.06	b : 0.06	" : 0.06	$ : 0.05	e : 0.05	a : 0.03	3 : 0.01	f : 0.01	
c : 0.24	e : 0.11	" : 0.09	d : 0.08	= : 0.08	! : 0.06	g : 0.06	[ : 0.06	$ : 0.05	b : 0.05	i : 0.03	# : 0.01	f : 0.01	
c : 0.28	" : 0.11	d : 0.09	g : 0.09	e : 0.08	= : 0.08	[ : 0.05	# : 0.03	b : 0.03	$ : 0.03	! : 0.03	i : 0.01	a : 0.01	f : 0.01	
c : 0.23	g : 0.09	e : 0.08	[ : 0.08	" : 0.08	# : 0.06	= : 0.06	f : 0.06	b : 0.05	! : 0.05	d : 0.05	$ : 0.03	i : 0.01	a : 0.01	
e : 0.16	c : 0.15	[ : 0.11	! : 0.09	g : 0.09	# : 0.06	= : 0.06	d : 0.06	f : 0.06	" : 0.03	$ : 0.03	b : 0.03	
c : 0.19	e : 0.16	d : 0.15	[ : 0.15	! : 0.09	g : 0.08	# : 0.05	f : 0.05	= : 0.03	" : 0.01	
c : 0.43	d : 0.21	e : 0.08	g : 0.06	! : 0.05	f : 0.05	# : 0.03	[ : 0.03	= : 0.03	
c : 0.39	d : 0.21	b : 0.09	e : 0.08	g : 0.06	[ : 0.05	f : 0.05	! : 0.01	= : 0.01	
c : 0.31	d : 0.18	o : 0.13	b : 0.11	e : 0.08	a : 0.05	g : 0.05	f : 0.05	= : 0.01	
n : 0.58	o : 0.23	d : 0.08	c : 0.06	m : 0.01	b : 0.01	
n : 0.58	o : 0.23	l : 0.09	c : 0.05	m : 0.03	
n : 0.58	o : 0.23	l : 0.15	m : 0.03	
n : 0.58	o : 0.23	l : 0.15	m : 0.03	
n : 0.58	o : 0.23	d : 0.08	l : 0.05	m : 0.01	c : 0.01	b : 0.01	
c : 0.39	d : 0.21	o : 0.09	e : 0.08	b : 0.08	a : 0.03	g : 0.03	f : 0.03	= : 0.01	
c : 0.43	d : 0.21	b : 0.09	e : 0.08	g : 0.05	f : 0.05	] : 0.01	2 : 0.01	a : 0.01	= : 0.01	
c : 0.43	d : 0.23	e : 0.08	] : 0.06	g : 0.05	f : 0.05	b : 0.03	2 : 0.01	4 : 0.01	= : 0.01	
] : 0.18	2 : 0.16	d : 0.15	e : 0.13	3 : 0.09	g : 0.06	= : 0.05	4 : 0.05	c : 0.05	f : 0.05	
2 : 0.19	e : 0.15	3 : 0.09	] : 0.09	c : 0.08	g : 0.08	= : 0.06	4 : 0.06	d : 0.05	f : 0.05	a : 0.03	b : 0.01	
c : 0.24	3 : 0.11	g : 0.09	] : 0.08	= : 0.06	e : 0.06	4 : 0.06	d : 0.06	f : 0.06	b : 0.06	2 : 0.03	a : 0.01	
c : 0.35	= : 0.09	e : 0.09	g : 0.09	b : 0.06	d : 0.06	i : 0.05	4 : 0.05	] : 0.03	f : 0.03	2 : 0.03	3 : 0.01	
c : 0.28	= : 0.11	d : 0.11	e : 0.09	] : 0.09	i : 0.06	g : 0.06	4 : 0.05	b : 0.03	2 : 0.03	3 : 0.01	f : 0.01	
] : 0.19	g : 0.13	= : 0.11	c : 0.11	d : 0.09	i : 0.08	e : 0.08	2 : 0.06	4 : 0.05	b : 0.01	a : 0.01	f : 0.01	
g : 0.13	= : 0.11	c : 0.11	2 : 0.11	i : 0.09	d : 0.09	] : 0.08	e : 0.06	b : 0.05	4 : 0.05	h : 0.01	3 : 0.01	a : 0.01	f : 0.01	
i : 0.13	c : 0.13	d : 0.11	g : 0.11	= : 0.09	b : 0.08	2 : 0.06	e : 0.06	4 : 0.05	f : 0.03	] : 0.03	3 : 0.03	h : 0.01	a : 0.01	
c : 0.15	i : 0.13	g : 0.11	= : 0.09	d : 0.08	4 : 0.05	] : 0.05	3 : 0.05	e : 0.05	b : 0.05	h : 0.05	2 : 0.05	a : 0.03	f : 0.01	[ : 0.01	
i : 0.13	c : 0.13	g : 0.11	= : 0.09	] : 0.09	e : 0.09	d : 0.08	3 : 0.06	2 : 0.05	h : 0.05	4 : 0.03	f : 0.01	b : 0.01	
c : 0.16	i : 0.13	g : 0.11	= : 0.09	d : 0.08	e : 0.08	3 : 0.06	h : 0.06	f : 0.05	2 : 0.05	4 : 0.03	] : 0.03	a : 0.01	
c : 0.16	i : 0.13	g : 0.11	e : 0.09	3 : 0.06	= : 0.06	h : 0.06	4 : 0.05	d : 0.05	f : 0.05	2 : 0.05	[ : 0.01	: : 0.01	a : 0.01	F : 0.01	] : 0.01	

#score	851.8082029165435
#seq	60
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_UTR_m1_run1.txt

#BEAR
effffffxxxxxxxxxxxxxxxffffff]	chr19:10426846-10427124(-)$1	278	195	224	21.6517
####cccyyyyyyyyyyyyyyyyccc22e	chr6:34213836-34214069(+)$1	233	142	171	26.7707
$$dddd^^^^^^^^^^^^^^^^^^^^ddd	chr17:46940655-46940908(+)$1	253	32	61	25.7646
!!eeeeexxxxxxxxxxxxxxxeeeee22	chr19:47113328-47113600(+)$1	272	187	216	22.9831
^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr8:101721588-101721796(-)$1	208	43	72	27.2060
""dddd^^^^^^^^^^^^^^^^^^^^^^d	chr6:44214743-44214980(+)$1	237	161	190	25.9488
^^^^^^^^^^^^^^^^^^^^^^^eeeeeb	chr19:6414512-6414775(-)$1	263	56	85	26.9083
!dddd[a^^^^^^^^^^^^^^^^^^^a]d	chr2:242291764-242292035(+)$1	271	49	78	25.4751
!!eeeeewwwwwwwwwwwwwweeeee]dd	chr1:6284658-6284905(-)$1	247	185	214	20.7250
eeee^^^^^^^^^^^^^^^^^^^^eeeee	chr1:169101540-169101762(+)$1	222	163	192	26.2940
eeeee^^^^^^^^^^^^^^^^^^^eeeee	chr6:30711441-30711695(-)$1	254	211	240	26.0189
$$$$cccxxxxxxxxxxxxxxxccc4444	chr13:30088180-30088449(-)$1	269	220	249	23.3119
"ffffff^^^^^^^^^^^^^^^^^^^^^^	chr16:4013974-4014269(-)$1	295	101	130	24.7808
[ffffffyyyyyyyyyyyyyyyyffffff	chr20:17594572-17594808(-)$1	236	97	126	25.7231
:::ddddyyyyyyyyyyyyyyyydddd::	chrX:131509971-131510299(-)$1	328	197	226	21.8038
ddd[cccyyyyyyyyyyyyyyyycccddd	chr3:50337662-50337974(-)$1	312	75	104	25.9294
!!eeeeeuuuuuuuuuuuueeeee22ccc	chr3:52559123-52559339(-)$1	216	8	37	18.1413
:::ddddyyyyyyyyyyyyyyyydddd:C	chr20:30754505-30754810(+)$1	305	241	270	21.6696
gggggggyyyyyyyyyyyyyyyygggggg	chr2:71213502-71213810(-)$1	308	125	154	25.6853
"""ddddxxxxxxxxxxxxxxxdddd333	chr8:101717132-101717362(-)$1	230	81	110	23.1499
ff!!cccxxxxxxxxxxxxxxxccc]fff	chr1:92148979-92149236(-)$1	257	76	105	22.8225
eeeddddyyyyyyyyyyyyyyyydddd33	chr12:69747573-69747829(+)$1	256	8	37	25.9587
^^^^^^^^^^^^^^^^^^^^^^^iiiiii	chr3:128532584-128532872(+)$1	288	111	140	26.6360
Bgggggggwwwwwwwwwwwwwwggggggg	chr21:46270966-46271218(-)$1	252	61	90	18.7920
!dddd^^^^^^^^^^^^^^^^^^^^dddd	chr6:53133579-53133832(-)$1	253	32	61	26.0296
ccc^^^^^^^^^^^^^^^^^^^^ccc]ff	chr7:103112987-103113250(-)$1	263	35	64	26.3675
dd!!cccyyyyyyyyyyyyyyyycccddd	chr8:17426550-17426890(+)$1	340	171	200	26.2612
eee[ccc^^^^^^^^^^^^^^^^^^^ccc	chr19:13249343-13249588(+)$1	245	142	171	25.1425
ffff^^^^^^^^^^^^^^^^^^^^fffff	chr14:31569723-31570047(-)$1	324	25	54	25.7181
^^^^^^^^^^^^^^^^^^^^^^^ffffff	chr17:44107758-44108026(-)$1	268	75	104	26.7832
^^^^^^^^^^^^^^^^^^^^^^^ffffff	chr22:42301925-42302137(+)$1	212	174	203	26.7832
^^^^^^^^^^^^^^^^^^^^^^^ffffff	chr7:128410477-128410743(+)$1	266	144	173	26.7832
^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr8:101721620-101721835(-)$1	215	82	111	27.2060
^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chr2:10923713-10923963(-)$1	250	74	103	27.2431
!bb^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:109854605-109854857(-)$1	252	176	205	26.2668
"""ddddxxxxxxxxxxxxxxxdddd333	chr8:101717172-101717384(-)$1	212	103	132	23.1499
$$$$cccxxxxxxxxxxxxxxxccc4444	chr13:30088051-30088304(-)$1	253	75	104	23.3119
+ffffff^^^^^^^^^^^^^^^^^^^^ff	chr7:137563949-137564218(-)$1	269	141	170	24.4177
eeee^^^^^^^^^^^^^^^^^^^eeeee]	chr12:98992219-98992569(+)$1	350	5	34	26.1924
!!eeeeeyyyyyyyyyyyyyyyyeeeee3	chr7:5567063-5567317(-)$1	254	169	198	27.0938
^^^^^^^^^^^^^^^^^^^^^^^ccc]ff	chr11:2153403-2153648(-)$1	245	130	159	27.1175
gggggg^^^^^^^^^^^^^^^^^^ggggg	chr11:309124-309385(+)$1	261	227	256	25.2457
#eeeee^^^^^^^^^^^^^^^^^^eeeee	chr19:10427169-10427415(-)$1	246	96	125	26.1693
^^^^^^^^^^^^^^^^^^^^^^^eeeee]	chr15:74005491-74005813(+)$1	322	113	142	27.2431
####cccxxxxxxxxxxxxxxxccc7777	chr19:13054846-13055093(+)$1	247	8	37	21.7694
"ffffffyyyyyyyyyyyyyyyyffffff	chr7:2703515-2703785(+)$1	270	153	182	25.9013
fffff^^^^^^^^^^^^^^^^^^^^ffff	chr20:30754213-30754472(+)$1	259	86	115	25.4843
dddd[bbyyyyyyyyyyyyyyyybb]ddd	chrX:108885105-108885327(-)$1	222	7	36	24.6120
!eeeee^^^^^^^^^^^^^^^^^^^^eee	chr5:38935227-38935469(+)$1	242	188	217	26.2011
[ddddeeeeeuuuuuuuuuuuueeeee]d	chr12:46582558-46582807(-)$1	249	127	156	18.4467
ccc!!ddddwwwwwwwwwwwwwwdddd]c	chr12:120935910-120936170(+)$1	260	81	110	19.7571
ccc^^^^^^^^^^^^^^^^^^^^cccfff	chr20:308850-309108(+)$1	258	89	118	26.2976
[eeeeezzzzzzzzzzzzzzzzzeeeee3	chr16:11643011-11643259(-)$1	248	91	120	23.1517
!ffffffawwwwwwwwwwwwwwa]fffff	chr14:65406377-65406616(-)$1	239	131	160	20.9217
[ccc^^^^^^^^^^^^^^^^^^^ccc]dd	chr6:7882914-7883134(-)$1	220	135	164	26.2486
iiiddddyyyyyyyyyyyyyyyyddddff	chr19:10427508-10427778(-)$1	270	176	205	25.7500
^^^^^^^^^^^^^^^^^^^^^^^dddd]d	chr16:68225222-68225479(+)$1	257	192	221	26.8832
^^^^^^^^^^^^^^^^^^^^^^^eeeeeg	chr17:53398498-53398740(+)$1	242	51	80	27.1656
::eeeeeyyyyyyyyyyyyyyyyeeeee:	chr1:236140100-236140331(-)$1	231	185	214	24.0459
c::ddddyyyyyyyyyyyyyyyydddd:c	chr17:66526555-66526814(+)$1	259	91	120	23.3871
cc[ccczzzzzzzzzzzzzzzzzccc]cc	chr6:89790457-89790711(+)$1	254	30	59	22.7859
gggggggyyyyyyyyyyyyyyyygggggg	chr12:53865320-53865616(+)$1	296	243	272	25.6853
$eeeee[bbuuuuuuuuuuuubb]eeeee	chr17:28792799-28793047(+)$1	248	171	200	18.7631

#otherMatches

#Seq PSSM
CUUUGCUGAAUUAAAGUUUGUAAGUAAAU	chr19:10426846-10427124(-)$1	278	195	224	21.6517
ACUUGAAUAAAAAAAAUAUCCUUUUCUGG	chr6:34213836-34214069(+)$1	233	142	171	26.7707
UAAGUGAUUAGUUUUCCAAGUUGUCCCAC	chr17:46940655-46940908(+)$1	253	32	61	25.7646
UUGGCGCCGCUUCCUCACAUCUGUGCUCC	chr19:47113328-47113600(+)$1	272	187	216	22.9831
CAACCCUGUAAUCAACCCCUACCAGCCAG	chr8:101721588-101721796(-)$1	208	43	72	27.2060
UAUUACGUAUAAUCCUUUUCUUUUCAAGG	chr6:44214743-44214980(+)$1	237	161	190	25.9488
UUCUUUUUAUUCUUUUAUUUUUUAAACCC	chr19:6414512-6414775(-)$1	263	56	85	26.9083
CAUCUGCUUACCACAUCACACCACUUGGA	chr2:242291764-242292035(+)$1	271	49	78	25.4751
AAAAAUGCAUUUACAACCUUUCAUUUAAC	chr1:6284658-6284905(-)$1	247	185	214	20.7250
GCAGUUGUACAAUUUUAUUUUUUUCUGCA	chr1:169101540-169101762(+)$1	222	163	192	26.2940
GAGCGUCGUUAAUUUAUUUCUUAUUGCUC	chr6:30711441-30711695(-)$1	254	211	240	26.0189
AUUGUGCAUACUCCAAACUUUCGCAGCCA	chr13:30088180-30088449(-)$1	269	220	249	23.3119
CUGUCUCGUUUUCACACCGCAUCAGUCCC	chr16:4013974-4014269(-)$1	295	101	130	24.7808
CGAGAGAAGCCAUGAGAGACAAGUCUCUU	chr20:17594572-17594808(-)$1	236	97	126	25.7231
UUUGGGAAAAAGCAAGUACCUCCUCCCUA	chrX:131509971-131510299(-)$1	328	197	226	21.8038
AGUUGCACAUAUUGAGAACCUAAUGCACU	chr3:50337662-50337974(-)$1	312	75	104	25.9294
CAUUCCCCUCCUCUCCCUAGGGAAACCUG	chr3:52559123-52559339(-)$1	216	8	37	18.1413
CCAGUGAAUUUCUCAAUCUUGCCUCACAG	chr20:30754505-30754810(+)$1	305	241	270	21.6696
ucaggucuaccuuaacaucucuugauuug	chr2:71213502-71213810(-)$1	308	125	154	25.6853
AACGGCUGUUUCCUCUUAUUCAAGCCAUG	chr8:101717132-101717362(-)$1	230	81	110	23.1499
AUUUCAGUAUAAAGAUCACCCGUUGUAUU	chr1:92148979-92149236(-)$1	257	76	105	22.8225
UCAAAGAAAUAACCCAGACUUAAUCUUGA	chr12:69747573-69747829(+)$1	256	8	37	25.9587
CCCCCCCUUUCCCCUCCCUCCUUGAAGGC	chr3:128532584-128532872(+)$1	288	111	140	26.6360
AGGGCAGAACCCUGCGUUUCUCUCUGUCC	chr21:46270966-46271218(-)$1	252	61	90	18.7920
CUUCUUUCAUCAAUUCAAAACCCCUAGAA	chr6:53133579-53133832(-)$1	253	32	61	26.0296
UGCUCUCCAUUCUUUUAAAUCUCGCACUA	chr7:103112987-103113250(-)$1	263	35	64	26.3675
CUCAUGAUUUCUCCUAAUACGCUUCAAGC	chr8:17426550-17426890(+)$1	340	171	200	26.2612
CCUAGCCGUCAUCUCCACACUCACCAGGC	chr19:13249343-13249588(+)$1	245	142	171	25.1425
CCACCAUUAAGGCUUUAAGAACAUGUGGA	chr14:31569723-31570047(-)$1	324	25	54	25.7181
UGAUUCACUUUGCCAUGUUUCCUUCACAU	chr17:44107758-44108026(-)$1	268	75	104	26.7832
UUUUAUACGAAUGUUUUCUACCAGUGUGC	chr22:42301925-42302137(+)$1	212	174	203	26.7832
CCCGCUGCCAAAAAAAAAAAAAAAGGAAA	chr7:128410477-128410743(+)$1	266	144	173	26.7832
CAACCCUGUAAUCAACCCCUACCAGCCAG	chr8:101721620-101721835(-)$1	215	82	111	27.2060
ACAAACUUUUUUAAACAAAAAACAAGACC	chr2:10923713-10923963(-)$1	250	74	103	27.2431
ACUCAAUAUUCUUCUCUAACCAUAUACGA	chr1:109854605-109854857(-)$1	252	176	205	26.2668
AACGGCUGUUUCCUCUUAUUCAAGCCAUG	chr8:101717172-101717384(-)$1	212	103	132	23.1499
AUUGUGCAUACUCCAAACUUUCGCAGCCA	chr13:30088051-30088304(-)$1	253	75	104	23.3119
ACUUUGUCCUCCUCGUCCCCUACCUCAAC	chr7:137563949-137564218(-)$1	269	141	170	24.4177
UUUCUAGAACUGUCACUUCAAUUGAAAAC	chr12:98992219-98992569(+)$1	350	5	34	26.1924
GUUGUUUUUUUAAUAGUCAUUCCAAAUAU	chr7:5567063-5567317(-)$1	254	169	198	27.0938
CUUUUCCAUCACUAAAAAUCACAGAGCAG	chr11:2153403-2153648(-)$1	245	130	159	27.1175
CGCUUUUCUACAAUGGCAUUCAAUAAAGU	chr11:309124-309385(+)$1	261	227	256	25.2457
CGGCCCCACCACCCCCUCCUACCCGGGCC	chr19:10427169-10427415(-)$1	246	96	125	26.1693
ACCACAUCACCACCCUCUUCUUCCAGUGC	chr15:74005491-74005813(+)$1	322	113	142	27.2431
AUUUUGGUUUUGUUCCCCUCCUCCACUCU	chr19:13054846-13055093(+)$1	247	8	37	21.7694
AGCCCCCACUCUCACCCUGCACAGGGGGU	chr7:2703515-2703785(+)$1	270	153	182	25.9013
GGGGUCAUACUCACUUCUUUAGCCAGCCC	chr20:30754213-30754472(+)$1	259	86	115	25.4843
CCUUUAGAAACACAUAAUUAACACUUAAG	chrX:108885105-108885327(-)$1	222	7	36	24.6120
AACUGGCCUAAAUAAACCUACACAAACCA	chr5:38935227-38935469(+)$1	242	188	217	26.2011
CUUCUUUUGCAAGUUUACAGAAGCAAACA	chr12:46582558-46582807(-)$1	249	127	156	18.4467
UCUUCUGUUCAAAUCUGGUUAAAAGCAUG	chr12:120935910-120936170(+)$1	260	81	110	19.7571
GCCCUCACUACCUGUAUCUCACCGGCGUG	chr20:308850-309108(+)$1	258	89	118	26.2976
UGGCUCUUUUUUCCUGCUUCCAUGGGCCU	chr16:11643011-11643259(-)$1	248	91	120	23.1517
CUUCACCCUUGUCCAAAAAUGUGAGGUGA	chr14:65406377-65406616(-)$1	239	131	160	20.9217
AAGCAUAGUUUACCUGCCCACGAGUUCUG	chr6:7882914-7883134(-)$1	220	135	164	26.2486
AAACAGCUGUUUUUCCCACAUUUGCUGCA	chr19:10427508-10427778(-)$1	270	176	205	25.7500
AGCCUAUGCCUUACCAAUCUCCUAGCUCA	chr16:68225222-68225479(+)$1	257	192	221	26.8832
UCCCAUCCCCUCCCUCCUUCACUCCUGCC	chr17:53398498-53398740(+)$1	242	51	80	27.1656
UCAACCAUGACCUCACCCCUCCUUGGUUU	chr1:236140100-236140331(-)$1	231	185	214	24.0459
AAACUGCUUUAUUUUCCCUACUUGCAGCG	chr17:66526555-66526814(+)$1	259	91	120	23.3871
CCCGAGUCAUGUUCCGCGAUCUUCUCAGG	chr6:89790457-89790711(+)$1	254	30	59	22.7859
GCCUGGCUCAAUAUCUAAUCAAUGUCAGG	chr12:53865320-53865616(+)$1	296	243	272	25.6853
UCUUUUUGAUCAACCAAUUUUUCUAAAAG	chr17:28792799-28793047(+)$1	248	171	200	18.7631

#DB
(((((((...............)))))).	chr19:10426846-10427124(-)$1	1	195	224	21.6517
....(((................)))..)	chr6:34213836-34214069(+)$1	1	142	171	26.7707
..((((....................)))	chr17:46940655-46940908(+)$1	1	32	61	25.7646
..(((((...............)))))..	chr19:47113328-47113600(+)$1	1	187	216	22.9831
..........................)))	chr8:101721588-101721796(-)$1	1	43	72	27.2060
..((((......................)	chr6:44214743-44214980(+)$1	1	161	190	25.9488
.......................)))))(	chr19:6414512-6414775(-)$1	1	56	85	26.9083
.((((.(...................).)	chr2:242291764-242292035(+)$1	1	49	78	25.4751
..(((((..............))))).))	chr1:6284658-6284905(-)$1	1	185	214	20.7250
((((....................)))))	chr1:169101540-169101762(+)$1	1	163	192	26.2940
(((((...................)))))	chr6:30711441-30711695(-)$1	1	211	240	26.0189
....(((...............)))....	chr13:30088180-30088449(-)$1	1	220	249	23.3119
.((((((......................	chr16:4013974-4014269(-)$1	1	101	130	24.7808
.((((((................))))))	chr20:17594572-17594808(-)$1	1	97	126	25.7231
...((((................))))..	chrX:131509971-131510299(-)$1	1	197	226	21.8038
(((.(((................))))))	chr3:50337662-50337974(-)$1	1	75	104	25.9294
..(((((............)))))..)))	chr3:52559123-52559339(-)$1	1	8	37	18.1413
...((((................)))).)	chr20:30754505-30754810(+)$1	1	241	270	21.6696
(((((((................))))))	chr2:71213502-71213810(-)$1	1	125	154	25.6853
...((((...............))))...	chr8:101717132-101717362(-)$1	1	81	110	23.1499
((..(((...............))).)))	chr1:92148979-92149236(-)$1	1	76	105	22.8225
(((((((................))))..	chr12:69747573-69747829(+)$1	1	8	37	25.9587
.......................))))))	chr3:128532584-128532872(+)$1	1	111	140	26.6360
((((((((..............)))))))	chr21:46270966-46271218(-)$1	1	61	90	18.7920
.((((....................))))	chr6:53133579-53133832(-)$1	1	32	61	26.0296
(((....................))).))	chr7:103112987-103113250(-)$1	1	35	64	26.3675
((..(((................))))))	chr8:17426550-17426890(+)$1	1	171	200	26.2612
(((.(((...................)))	chr19:13249343-13249588(+)$1	1	142	171	25.1425
((((....................)))))	chr14:31569723-31570047(-)$1	1	25	54	25.7181
.......................))))))	chr17:44107758-44108026(-)$1	1	75	104	26.7832
.......................))))))	chr22:42301925-42302137(+)$1	1	174	203	26.7832
.......................))))))	chr7:128410477-128410743(+)$1	1	144	173	26.7832
..........................)))	chr8:101721620-101721835(-)$1	1	82	111	27.2060
.......................))))).	chr2:10923713-10923963(-)$1	1	74	103	27.2431
.((..........................	chr1:109854605-109854857(-)$1	1	176	205	26.2668
...((((...............))))...	chr8:101717172-101717384(-)$1	1	103	132	23.1499
....(((...............)))....	chr13:30088051-30088304(-)$1	1	75	104	23.3119
.((((((....................))	chr7:137563949-137564218(-)$1	1	141	170	24.4177
((((...................))))).	chr12:98992219-98992569(+)$1	1	5	34	26.1924
..(((((................))))).	chr7:5567063-5567317(-)$1	1	169	198	27.0938
.......................))).))	chr11:2153403-2153648(-)$1	1	130	159	27.1175
((((((..................)))))	chr11:309124-309385(+)$1	1	227	256	25.2457
.(((((..................)))))	chr19:10427169-10427415(-)$1	1	96	125	26.1693
.......................))))).	chr15:74005491-74005813(+)$1	1	113	142	27.2431
....(((...............)))....	chr19:13054846-13055093(+)$1	1	8	37	21.7694
.((((((................))))))	chr7:2703515-2703785(+)$1	1	153	182	25.9013
(((((....................))))	chr20:30754213-30754472(+)$1	1	86	115	25.4843
((((.((................)).)))	chrX:108885105-108885327(-)$1	1	7	36	24.6120
.(((((....................)))	chr5:38935227-38935469(+)$1	1	188	217	26.2011
.(((((((((............))))).)	chr12:46582558-46582807(-)$1	1	127	156	18.4467
(((..((((..............)))).)	chr12:120935910-120936170(+)$1	1	81	110	19.7571
(((....................)))(((	chr20:308850-309108(+)$1	1	89	118	26.2976
.(((((.................))))).	chr16:11643011-11643259(-)$1	1	91	120	23.1517
.(((((((..............).)))))	chr14:65406377-65406616(-)$1	1	131	160	20.9217
.(((...................))).))	chr6:7882914-7883134(-)$1	1	135	164	26.2486
)))((((................))))((	chr19:10427508-10427778(-)$1	1	176	205	25.7500
.......................)))).)	chr16:68225222-68225479(+)$1	1	192	221	26.8832
.......................))))))	chr17:53398498-53398740(+)$1	1	51	80	27.1656
..(((((................))))).	chr1:236140100-236140331(-)$1	1	185	214	24.0459
)..((((................)))).(	chr17:66526555-66526814(+)$1	1	91	120	23.3871
((.(((.................))).))	chr6:89790457-89790711(+)$1	1	30	59	22.7859
(((((((................))))))	chr12:53865320-53865616(+)$1	1	243	272	25.6853
.(((((.((............)).)))))	chr17:28792799-28793047(+)$1	1	171	200	18.7631

#PSSM
^ : 0.19	! : 0.14	e : 0.09	" : 0.07	c : 0.07	$ : 0.06	[ : 0.06	# : 0.04	: : 0.04	d : 0.04	g : 0.04	f : 0.04	B : 0.01	+ : 0.01	i : 0.01	
^ : 0.19	f : 0.14	e : 0.14	d : 0.09	c : 0.07	! : 0.06	: : 0.06	g : 0.06	$ : 0.04	" : 0.04	# : 0.03	b : 0.01	i : 0.01	
e : 0.22	^ : 0.19	f : 0.12	d : 0.11	g : 0.06	c : 0.06	: : 0.04	# : 0.03	$ : 0.03	" : 0.03	! : 0.03	b : 0.01	i : 0.01	[ : 0.01	
^ : 0.23	d : 0.20	e : 0.19	f : 0.12	g : 0.06	! : 0.04	# : 0.03	$ : 0.03	[ : 0.03	c : 0.03	
^ : 0.30	d : 0.19	e : 0.15	c : 0.14	f : 0.11	g : 0.06	[ : 0.01	! : 0.01	
^ : 0.34	d : 0.15	e : 0.15	c : 0.14	f : 0.09	g : 0.06	[ : 0.01	b : 0.01	
^ : 0.42	c : 0.12	d : 0.12	f : 0.09	e : 0.09	g : 0.04	z : 0.03	a : 0.01	b : 0.01	[ : 0.01	
^ : 0.49	y : 0.23	x : 0.12	z : 0.03	w : 0.01	u : 0.01	g : 0.01	e : 0.01	d : 0.01	a : 0.01	b : 0.01	
^ : 0.49	y : 0.23	x : 0.12	w : 0.04	z : 0.03	u : 0.01	e : 0.01	d : 0.01	b : 0.01	
^ : 0.49	y : 0.23	x : 0.12	w : 0.06	u : 0.03	z : 0.03	e : 0.01	
^ : 0.49	y : 0.23	x : 0.12	w : 0.06	u : 0.04	z : 0.03	
^ : 0.49	y : 0.23	x : 0.12	w : 0.06	u : 0.04	z : 0.03	
^ : 0.49	y : 0.23	x : 0.12	w : 0.06	u : 0.04	z : 0.03	
^ : 0.49	y : 0.23	x : 0.12	w : 0.06	u : 0.04	z : 0.03	
^ : 0.49	y : 0.23	x : 0.12	w : 0.06	u : 0.04	z : 0.03	
^ : 0.49	y : 0.23	x : 0.12	w : 0.06	u : 0.04	z : 0.03	
^ : 0.49	y : 0.23	x : 0.12	w : 0.06	u : 0.04	z : 0.03	
^ : 0.49	y : 0.23	x : 0.12	w : 0.06	u : 0.04	z : 0.03	
^ : 0.49	y : 0.23	x : 0.12	w : 0.06	u : 0.04	z : 0.03	
^ : 0.49	y : 0.23	x : 0.12	w : 0.06	u : 0.03	z : 0.03	e : 0.01	
^ : 0.49	y : 0.23	x : 0.12	w : 0.06	u : 0.03	z : 0.03	e : 0.01	
^ : 0.49	y : 0.23	x : 0.12	w : 0.04	e : 0.03	z : 0.03	u : 0.01	b : 0.01	
^ : 0.49	y : 0.23	e : 0.06	c : 0.06	d : 0.03	z : 0.03	f : 0.01	g : 0.01	w : 0.01	a : 0.01	b : 0.01	
^ : 0.26	c : 0.19	e : 0.19	d : 0.14	f : 0.09	g : 0.04	] : 0.03	i : 0.01	b : 0.01	
e : 0.23	c : 0.19	^ : 0.19	d : 0.14	f : 0.12	g : 0.06	2 : 0.01	i : 0.01	b : 0.01	
e : 0.23	^ : 0.15	d : 0.15	f : 0.14	c : 0.12	g : 0.06	4 : 0.03	] : 0.03	2 : 0.01	i : 0.01	7 : 0.01	
e : 0.23	d : 0.22	f : 0.17	] : 0.07	^ : 0.06	g : 0.06	4 : 0.03	c : 0.03	3 : 0.03	2 : 0.01	a : 0.01	i : 0.01	7 : 0.01	
f : 0.23	e : 0.20	d : 0.14	] : 0.06	g : 0.06	^ : 0.04	: : 0.04	c : 0.04	3 : 0.04	2 : 0.03	4 : 0.03	i : 0.01	7 : 0.01	
f : 0.22	d : 0.20	e : 0.09	c : 0.07	g : 0.07	3 : 0.07	] : 0.06	4 : 0.03	^ : 0.03	: : 0.03	2 : 0.01	b : 0.01	C : 0.01	i : 0.01	7 : 0.01	

#score	1553.937215428499
#seq	63
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_CDS_m3_run2.txt

#BEAR
eeeeeqqqqqqqqeeee	chr14:101200761-101201013(+)$1	252	207	224	13.7374
eeeeeqqqqqqqqeeee	chr17:80196513-80196750(+)$1	237	188	205	13.7374
bb[bbqqqqqqqqbb]b	chr7:45928138-45928456(+)$1	318	246	263	12.0012
!ddddqqqqqqqqdddd	chr1:230846387-230846685(-)$1	298	28	45	14.1408
fffffqqqqqqqqffff	chr6:43109569-43109847(+)$1	278	27	44	12.2139
eeeeeqqqqqqqqeeee	chr20:35832188-35832433(+)$1	245	117	134	13.7374
[ddddqqqqqqqqdddd	chr19:6694523-6694745(-)$1	222	131	148	14.1128
eeeeeqqqqqqqqeeee	chr19:45411737-45412018(+)$1	281	143	160	13.7374
!ddddqqqqqqqqdddd	chr11:1778533-1778768(-)$1	235	178	195	14.1408
eeeeeqqqqqqqqeeee	chr17:76968289-76968551(-)$1	262	91	108	13.7374
eeeeeqqqqqqqqeeee	chr19:13049847-13050072(+)$1	225	83	100	13.7374
[a[bbqqqqqqqqbb]a	chr16:3767355-3767612(-)$1	257	93	110	12.6818
fffffqqqqqqqqffff	chr3:58084339-58084607(+)$1	268	197	214	12.2139
eeeeeqqqqqqqqeeee	chr10:73588673-73588936(-)$1	263	229	246	13.7374
eeeeeqqqqqqqqeeee	chr10:73590803-73591034(-)$1	231	96	113	13.7374
[ddddqqqqqqqqdddd	chr1:35657872-35658145(-)$1	273	159	176	14.1128
eeeeeqqqqqqqqeeee	chr19:6686074-6686289(-)$1	215	146	163	13.7374
hhhhhqqqqqqqqhhhh	chr10:95353498-95353742(-)$1	244	209	226	12.1745
c[cccqqqqqqqqccc]	chr1:19513007-19513253(-)$1	246	212	229	13.5446
:ddddqqqqqqqqdddd	chr8:27463815-27464078(-)$1	263	60	77	13.1912
eeeeeqqqqqqqqeeee	chr9:116840313-116840548(-)$1	235	78	95	13.7374
###bbqqqqqqqqbb22	chr3:50095247-50095527(+)$1	280	180	197	11.8886
ddd[aqqqqqqqqa]dd	chr8:57906013-57906363(-)$1	350	230	247	13.5778
d:cccqqqqqqqqccc:	chr21:46888551-46888796(+)$1	245	225	242	11.5543
dd[bbqqqqqqqqbb]d	chr8:145640036-145640325(-)$1	289	178	195	12.6983
gggggqqqqqqqqgggg	chr2:220404667-220404930(-)$1	263	117	134	13.1395
eeeeeqqqqqqqqeeee	chr6:144803243-144803495(+)$1	252	17	34	13.7374
"""bbqqqqqqqqbbff	chr21:46897240-46897494(+)$1	254	43	60	12.3109
c[cccqqqqqqqqcccc	chr8:27461704-27461930(-)$1	226	125	142	13.5894
hhhhhqqqqqqqqhhhh	chr6:31996928-31997183(+)$1	255	29	46	12.1745
dddbbqqqqqqqqbb]d	chr1:230846039-230846274(-)$1	235	189	206	12.7952
hhh[aqqqqqqqqa]hh	chr3:49160252-49160538(-)$1	286	111	128	12.6212
bb[bbqqqqqqqqbb]b	chr7:45928256-45928520(+)$1	264	128	145	12.0012
ccc[aqqqqqqqqa]cc	chr20:17608143-17608393(-)$1	250	166	183	13.3408
!ddddqqqqqqqqdddd	chr6:132271532-132271758(-)$1	226	142	159	14.1408
!bb[aqqqqqqqqa]bb	chr1:980520-980757(+)$1	237	23	40	12.4326
'ddddqqqqqqqqdddd	chr9:116840348-116840591(-)$1	243	189	206	13.4803
##cccqqqqqqqqccc4	chr6:160492916-160493144(+)$1	228	173	190	13.4870
$ddddqqqqqqqqdddd	chr21:46899887-46900136(+)$1	249	212	229	13.8531
[ddddqqqqqqqqdddd	chr17:79918551-79918888(-)$1	337	246	263	14.1128
bbbbaqqqqqqqqa]bb	chr20:60889758-60889985(-)$1	227	82	99	11.9560
:ddddqqqqqqqqdddd	chr12:57556588-57556830(+)$1	242	53	70	13.1912
:ddddqqqqqqqqdddd	chr9:116999166-116999409(+)$1	243	2	19	13.1912
hhhhhqqqqqqqqhhhh	chr10:95353489-95353694(-)$1	205	161	178	12.1745
fffffqqqqqqqqffff	chr20:61461020-61461271(+)$1	251	82	99	12.2139
fddddqqqqqqqqdddd	chr1:230839950-230840183(-)$1	233	96	113	13.8499
eeeeeqqqqqqqqeeee	chr6:24357741-24358074(-)$1	333	153	170	13.7374
eeeeeqqqqqqqqeeee	chr9:128003183-128003426(-)$1	243	136	153	13.7374
[ddddqqqqqqqqdddd	chr19:6714135-6714359(-)$1	224	156	173	14.1128
b[cccqqqqqqqqcccb	chr1:19446597-19446849(-)$1	252	160	177	13.2228
gddddqqqqqqqqdddd	chr10:102112033-102112282(+)$1	249	27	44	13.9742
eeeeeqqqqqqqqeeee	chr19:6686089-6686302(-)$1	213	159	176	13.7374
""cccqqqqqqqqccc4	chr19:6682124-6682340(-)$1	216	30	47	13.5289
:ddddqqqqqqqqdddd	chr9:116823733-116823969(-)$1	236	211	228	13.1912
bba[aqqqqqqqqa]a]	chr19:45412200-45412458(+)$1	258	51	68	12.7546
d[cccqqqqqqqqcccd	chr20:61460879-61461132(+)$1	253	198	215	13.6208
gggggqqqqqqqqgggg	chr11:75279995-75280319(+)$1	324	116	133	13.1395
c[cccqqqqqqqqccc4	chr9:116997816-116998032(+)$1	216	124	141	13.5280
e[cccqqqqqqqqccc]	chr3:133475025-133475271(+)$1	246	22	39	13.5752
[ddddqqqqqqqqdddd	chr9:116999160-116999366(+)$1	206	38	55	14.1128
:ddddqqqqqqqqdddd	chr11:116706840-116707086(-)$1	246	83	100	13.1912
::cccqqqqqqqqcccc	chr6:31239335-31239639(-)$1	304	7	24	11.8300

#otherMatches

#Seq PSSM
CCCUCUCCUCACCGAGG	chr14:101200761-101201013(+)$1	252	207	224	13.7374
GCCACAGCCUGAGGUGG	chr17:80196513-80196750(+)$1	237	188	205	13.7374
CCGCCUCGUGCUCGGAG	chr7:45928138-45928456(+)$1	318	246	263	12.0012
AUGGCACUUAAAGGUCA	chr1:230846387-230846685(-)$1	298	28	45	14.1408
GGGUAGCACCGUGUACC	chr6:43109569-43109847(+)$1	278	27	44	12.2139
GACAGCAUCCCACCUGU	chr20:35832188-35832433(+)$1	245	117	134	13.7374
CGUCGACGCGGAACGGC	chr19:6694523-6694745(-)$1	222	131	148	14.1128
CGGCUGUCCAAGGAGCU	chr19:45411737-45412018(+)$1	281	143	160	13.7374
UGGUGGACCAGAACAUC	chr11:1778533-1778768(-)$1	235	178	195	14.1408
UGGCCCUACUGAAGGCC	chr17:76968289-76968551(-)$1	262	91	108	13.7374
UCUAAUCCCCCACUUAG	chr19:13049847-13050072(+)$1	225	83	100	13.7374
GGAGUACGACAUGGCGC	chr16:3767355-3767612(-)$1	257	93	110	12.6818
GUGUGUACAAACCCAUG	chr3:58084339-58084607(+)$1	268	197	214	12.2139
UGGCCCCCUUCAUGGCC	chr10:73588673-73588936(-)$1	263	229	246	13.7374
AGGAGAUAGUGGACUCC	chr10:73590803-73591034(-)$1	231	96	113	13.7374
CGGGCCUAAGUACGCCU	chr1:35657872-35658145(-)$1	273	159	176	14.1128
UCUACCCAGGCAAGUGG	chr19:6686074-6686289(-)$1	215	146	163	13.7374
GGUUUGGACUAAGGGGC	chr10:95353498-95353742(-)$1	244	209	226	12.1745
CAGCCAAGGUAGAGGCC	chr1:19513007-19513253(-)$1	246	212	229	13.5446
AUCAGAGACAAAGCUGA	chr8:27463815-27464078(-)$1	263	60	77	13.1912
UGCUCUUGCUGCUGAGC	chr9:116840313-116840548(-)$1	235	78	95	13.7374
AGAGCAAAAGUAAGUAG	chr3:50095247-50095527(+)$1	280	180	197	11.8886
GGGCAUCCGCCUUUCCC	chr8:57906013-57906363(-)$1	350	230	247	13.5778
GACGGAGCUGUGGCCGG	chr21:46888551-46888796(+)$1	245	225	242	11.5543
CCAGGCCCCCCGUCCAG	chr8:145640036-145640325(-)$1	289	178	195	12.6983
GGCAGCCCUGACCCUGC	chr2:220404667-220404930(-)$1	263	117	134	13.1395
UUCUUGAAAAAAAAAGA	chr6:144803243-144803495(+)$1	252	17	34	13.7374
CCGGGGGGCGUGACCGU	chr21:46897240-46897494(+)$1	254	43	60	12.3109
GAGUCGGGGUCCAGACC	chr8:27461704-27461930(-)$1	226	125	142	13.5894
AAAGGCAAGCUCAUUUU	chr6:31996928-31997183(+)$1	255	29	46	12.1745
GCACCUCCCGGCUGGAU	chr1:230846039-230846274(-)$1	235	189	206	12.7952
GUCGAGAUGAGGAUGGG	chr3:49160252-49160538(-)$1	286	111	128	12.6212
CCGCCUCGUGCUCGGAG	chr7:45928256-45928520(+)$1	264	128	145	12.0012
CUCCCAGCUCACAGAGA	chr20:17608143-17608393(-)$1	250	166	183	13.3408
CUGCAAGUACCAGUGCA	chr6:132271532-132271758(-)$1	226	142	159	14.1408
CCACCUUCGCCCCGCUG	chr1:980520-980757(+)$1	237	23	40	12.4326
CAAGUGCAGGAAAACUU	chr9:116840348-116840591(-)$1	243	189	206	13.4803
UAACCCCAGCGCAGGUG	chr6:160492916-160493144(+)$1	228	173	190	13.4870
CGGGGUCUGCCCUCCUC	chr21:46899887-46900136(+)$1	249	212	229	13.8531
CGUGGAGAGCUUCCCGC	chr17:79918551-79918888(-)$1	337	246	263	14.1128
UGGCCGCGUGCGAGAGC	chr20:60889758-60889985(-)$1	227	82	99	11.9560
UGGCACCAACAAAUGCC	chr12:57556588-57556830(+)$1	242	53	70	13.1912
UCUGGGCCUGGGACCAG	chr9:116999166-116999409(+)$1	243	2	19	13.1912
GGUUUGGACUAAGGGGC	chr10:95353489-95353694(-)$1	205	161	178	12.1745
UUCCUUUCCCUGUAGGG	chr20:61461020-61461271(+)$1	251	82	99	12.2139
CCAGGACCAUCCACCUG	chr1:230839950-230840183(-)$1	233	96	113	13.8499
CUUGUGUACCGCAACGG	chr6:24357741-24358074(-)$1	333	153	170	13.7374
ACUCCUGGUAAGUGGGG	chr9:128003183-128003426(-)$1	243	136	153	13.7374
CCACUGAGUUUGAGGUG	chr19:6714135-6714359(-)$1	224	156	173	14.1128
CACUGCACAUCUACAGG	chr1:19446597-19446849(-)$1	252	160	177	13.2228
GCAUCCUUUCCCAGAUG	chr10:102112033-102112282(+)$1	249	27	44	13.9742
UCUACCCAGGCAAGUGG	chr19:6686089-6686302(-)$1	213	159	176	13.7374
UUGUCCAGGAACAGACC	chr19:6682124-6682340(-)$1	216	30	47	13.5289
AACGGUAACAACUUCGU	chr9:116823733-116823969(-)$1	236	211	228	13.1912
CGCGCGGAUGGAGGAGA	chr19:45412200-45412458(+)$1	258	51	68	12.7546
UGCAGACCCUGCCCUGA	chr20:61460879-61461132(+)$1	253	198	215	13.6208
CUGCUAACCAAAGAGCA	chr11:75279995-75280319(+)$1	324	116	133	13.1395
AUGAGAUUUUCCCCUCC	chr9:116997816-116998032(+)$1	216	124	141	13.5280
ACAGUGUGAUCAGACUC	chr3:133475025-133475271(+)$1	246	22	39	13.5752
CGGCUGUUCACCUGGCC	chr9:116999160-116999366(+)$1	206	38	55	14.1128
GAGAUGAGCAAGGAUCU	chr11:116706840-116707086(-)$1	246	83	100	13.1912
GAGGUAUUUCGACACCG	chr6:31239335-31239639(-)$1	304	7	24	11.8300

#DB
(((((........))))	chr14:101200761-101201013(+)$1	1	207	224	13.7374
(((((........))))	chr17:80196513-80196750(+)$1	1	188	205	13.7374
((.((........)).)	chr7:45928138-45928456(+)$1	1	246	263	12.0012
.((((........))))	chr1:230846387-230846685(-)$1	1	28	45	14.1408
(((((........))))	chr6:43109569-43109847(+)$1	1	27	44	12.2139
(((((........))))	chr20:35832188-35832433(+)$1	1	117	134	13.7374
.((((........))))	chr19:6694523-6694745(-)$1	1	131	148	14.1128
(((((........))))	chr19:45411737-45412018(+)$1	1	143	160	13.7374
.((((........))))	chr11:1778533-1778768(-)$1	1	178	195	14.1408
(((((........))))	chr17:76968289-76968551(-)$1	1	91	108	13.7374
(((((........))))	chr19:13049847-13050072(+)$1	1	83	100	13.7374
.(.((........)).)	chr16:3767355-3767612(-)$1	1	93	110	12.6818
(((((........))))	chr3:58084339-58084607(+)$1	1	197	214	12.2139
(((((........))))	chr10:73588673-73588936(-)$1	1	229	246	13.7374
(((((........))))	chr10:73590803-73591034(-)$1	1	96	113	13.7374
.((((........))))	chr1:35657872-35658145(-)$1	1	159	176	14.1128
(((((........))))	chr19:6686074-6686289(-)$1	1	146	163	13.7374
(((((........))))	chr10:95353498-95353742(-)$1	1	209	226	12.1745
(.(((........))).	chr1:19513007-19513253(-)$1	1	212	229	13.5446
.((((........))))	chr8:27463815-27464078(-)$1	1	60	77	13.1912
(((((........))))	chr9:116840313-116840548(-)$1	1	78	95	13.7374
...((........))..	chr3:50095247-50095527(+)$1	1	180	197	11.8886
(((.(........).))	chr8:57906013-57906363(-)$1	1	230	247	13.5778
).(((........))).	chr21:46888551-46888796(+)$1	1	225	242	11.5543
((.((........)).)	chr8:145640036-145640325(-)$1	1	178	195	12.6983
(((((........))))	chr2:220404667-220404930(-)$1	1	117	134	13.1395
(((((........))))	chr6:144803243-144803495(+)$1	1	17	34	13.7374
...((........))))	chr21:46897240-46897494(+)$1	1	43	60	12.3109
(.(((........))))	chr8:27461704-27461930(-)$1	1	125	142	13.5894
(((((........))))	chr6:31996928-31997183(+)$1	1	29	46	12.1745
(((((........)).)	chr1:230846039-230846274(-)$1	1	189	206	12.7952
(((.(........).))	chr3:49160252-49160538(-)$1	1	111	128	12.6212
((.((........)).)	chr7:45928256-45928520(+)$1	1	128	145	12.0012
(((.(........).))	chr20:17608143-17608393(-)$1	1	166	183	13.3408
.((((........))))	chr6:132271532-132271758(-)$1	1	142	159	14.1408
.((.(........).))	chr1:980520-980757(+)$1	1	23	40	12.4326
.((((........))))	chr9:116840348-116840591(-)$1	1	189	206	13.4803
..(((........))).	chr6:160492916-160493144(+)$1	1	173	190	13.4870
.((((........))))	chr21:46899887-46900136(+)$1	1	212	229	13.8531
.((((........))))	chr17:79918551-79918888(-)$1	1	246	263	14.1128
(((((........).))	chr20:60889758-60889985(-)$1	1	82	99	11.9560
.((((........))))	chr12:57556588-57556830(+)$1	1	53	70	13.1912
.((((........))))	chr9:116999166-116999409(+)$1	1	2	19	13.1912
(((((........))))	chr10:95353489-95353694(-)$1	1	161	178	12.1745
(((((........))))	chr20:61461020-61461271(+)$1	1	82	99	12.2139
)((((........))))	chr1:230839950-230840183(-)$1	1	96	113	13.8499
(((((........))))	chr6:24357741-24358074(-)$1	1	153	170	13.7374
(((((........))))	chr9:128003183-128003426(-)$1	1	136	153	13.7374
.((((........))))	chr19:6714135-6714359(-)$1	1	156	173	14.1128
(.(((........))))	chr1:19446597-19446849(-)$1	1	160	177	13.2228
)((((........))))	chr10:102112033-102112282(+)$1	1	27	44	13.9742
(((((........))))	chr19:6686089-6686302(-)$1	1	159	176	13.7374
..(((........))).	chr19:6682124-6682340(-)$1	1	30	47	13.5289
.((((........))))	chr9:116823733-116823969(-)$1	1	211	228	13.1912
(((.(........).).	chr19:45412200-45412458(+)$1	1	51	68	12.7546
(.(((........))))	chr20:61460879-61461132(+)$1	1	198	215	13.6208
(((((........))))	chr11:75279995-75280319(+)$1	1	116	133	13.1395
(.(((........))).	chr9:116997816-116998032(+)$1	1	124	141	13.5280
(.(((........))).	chr3:133475025-133475271(+)$1	1	22	39	13.5752
.((((........))))	chr9:116999160-116999366(+)$1	1	38	55	14.1128
.((((........))))	chr11:116706840-116707086(-)$1	1	83	100	13.1912
..(((........)))(	chr6:31239335-31239639(-)$1	1	7	24	11.8300

#PSSM
e : 0.24	[ : 0.09	: : 0.09	b : 0.08	d : 0.08	! : 0.06	f : 0.06	h : 0.06	c : 0.06	g : 0.04	# : 0.03	" : 0.03	' : 0.01	$ : 0.01	
d : 0.32	e : 0.22	[ : 0.09	b : 0.08	h : 0.06	f : 0.04	# : 0.03	: : 0.03	g : 0.03	" : 0.03	a : 0.01	c : 0.01	
d : 0.30	e : 0.22	c : 0.17	[ : 0.06	h : 0.06	f : 0.04	g : 0.03	b : 0.03	# : 0.01	" : 0.01	a : 0.01	
d : 0.27	e : 0.22	c : 0.16	b : 0.12	[ : 0.08	f : 0.04	h : 0.04	g : 0.03	
d : 0.27	e : 0.22	c : 0.16	b : 0.11	a : 0.09	f : 0.04	h : 0.04	g : 0.03	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.27	e : 0.22	c : 0.16	b : 0.11	a : 0.09	f : 0.04	h : 0.04	g : 0.03	
d : 0.27	e : 0.22	c : 0.16	b : 0.11	] : 0.09	f : 0.04	h : 0.04	g : 0.03	
d : 0.29	e : 0.22	c : 0.17	] : 0.08	f : 0.06	h : 0.06	g : 0.03	b : 0.03	2 : 0.01	a : 0.01	
d : 0.33	e : 0.22	b : 0.08	f : 0.06	h : 0.06	] : 0.04	c : 0.04	4 : 0.04	g : 0.03	a : 0.01	2 : 0.01	: : 0.01	

#score	820.411674772471
#seq	62
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_UTR_m2_run2.txt

#BEAR
===eeeeeqqqqqqqqeeeee66	chr1:245027514-245027764(-)$1	250	194	217	6.8402
h"""bbrrrrrrrrrbb333hhh	chr4:174253031-174253318(-)$1	287	73	96	7.7689
[ccc!!bboooooobb4444ccc	chr14:102549353-102549619(-)$1	266	208	231	7.0941
gggggg[aooooooa]ggggggg	chr14:102550932-102551190(-)$1	258	158	181	7.1916
ffffuuuuuuuuuuuuffffff]	chr16:70696474-70696723(-)$1	249	53	76	10.4500
:eeeee!!aooooooa22eeeee	chr9:117073829-117074115(+)$1	286	234	257	6.8670
ffffftttttttttttffffffB	chr14:39648306-39648551(+)$1	245	8	31	9.4775
iiiiiivvvvvvvvvvvvviiii	chr2:159313486-159313829(+)$1	343	148	171	10.9268
[eeeeerrrrrrrrreeeee]bb	chr21:46915219-46915445(+)$1	226	107	130	10.2187
feeeeeaqqqqqqqqa]eeeee:	chr19:51857296-51857633(-)$1	337	163	186	7.2024
dddd[assssssssssa]dddd3	chr16:28846373-28846609(+)$1	236	12	35	10.2907
[bbxxxxxxxxxxxxxxxbbddd	chr20:43029850-43030149(+)$1	299	237	260	9.9138
ee[eeeeeqqqqqqqqeeeee77	chr12:112756954-112757265(-)$1	311	16	39	6.5049
deeeee^^^^^^^^^^^^^^^^^	chr3:48456292-48456542(-)$1	250	106	129	10.2832
[eeeee[bb[arrrrrrrrra]b	chr3:184044922-184045214(+)$1	292	221	244	6.9685
!!ddddssssssssssdddd22b	chr11:130013183-130013419(+)$1	236	207	230	9.7973
[eeeeesssssssssseeeeecc	chr9:117014773-117015022(+)$1	249	159	182	12.1519
"eeeee^^^^^^^^^^^^^^^^^	chr12:49666601-49666860(+)$1	259	24	47	10.6416
ggwwwwwwwwwwwwwwggggggg	chr12:57504877-57505160(-)$1	283	71	94	11.4639
c[ccctttttttttttccc]ccc	chr19:51856276-51856562(-)$1	286	78	101	10.8691
[bbeeeeeooooooeeeee]bb]	chr1:19444252-19444503(-)$1	251	57	80	6.6919
ddd!!assssssssssa22dddd	chr17:75484225-75484478(+)$1	253	150	173	10.0459
[ccc!!cccoooooocccccc]c	chr6:26157196-26157418(+)$1	222	45	68	6.9614
gggggg[aooooooa]ggggggg	chr14:102551608-102551860(-)$1	252	51	74	7.1916
"a!!bbssssssssssbb22a22	chr9:100777605-100777868(+)$1	263	97	120	9.4179
[eeeee^^^^^^^^^^^^^^^^^	chr17:7082235-7082519(-)$1	284	132	155	10.8629
[eeeeeooooooeeeeea]eeee	chr17:1665246-1665480(+)$1	234	15	38	6.8414
geeeeerrrrrrrrreeeee]gg	chr17:37617680-37617971(+)$1	291	237	260	10.2352

#otherMatches

#Seq PSSM
UCGGAGCUGAAAGAGGAGCUCAA	chr1:245027514-245027764(-)$1	250	194	217	6.8402
gaagaugaagaaUAAAUGGCUAU	chr4:174253031-174253318(-)$1	287	73	96	7.7689
gcaaaaucaugaaagacauAUUG	chr14:102549353-102549619(-)$1	266	208	231	7.0941
CACUUGGCAGUGAAGGUGAGUGA	chr14:102550932-102551190(-)$1	258	158	181	7.1916
UUAUGAAUAUAAUAAAAUGGAGC	chr16:70696474-70696723(-)$1	249	53	76	10.4500
ACCAAUCACAAAAGCGGCGUUGG	chr9:117073829-117074115(+)$1	286	234	257	6.8670
UGAACAAAAACUUGAAGUUCAGG	chr14:39648306-39648551(+)$1	245	8	31	9.4775
gcACUUUUUUAAUUUUUUCGGGU	chr2:159313486-159313829(+)$1	343	148	171	10.9268
GCCUUGGAUUUGGCAUGAGGGUG	chr21:46915219-46915445(+)$1	226	107	130	10.2187
GCGGCUCAAGGAGAAGAAGCUGG	chr19:51857296-51857633(-)$1	337	163	186	7.2024
UUGCCCCCAUGCUUCAGAGCAAC	chr16:28846373-28846609(+)$1	236	12	35	10.2907
CUGGAAUUUGAGAAUGUGCAGGU	chr20:43029850-43030149(+)$1	299	237	260	9.9138
AGAACAGACCCCUCUCUCUGUAA	chr12:112756954-112757265(-)$1	311	16	39	6.5049
CCAUGUCAACUCCUCCCAGCUCA	chr3:48456292-48456542(-)$1	250	106	129	10.2832
UGGAGGAGCGGAGUAGAGAACGG	chr3:184044922-184045214(+)$1	292	221	244	6.9685
AAGAUCCCACGAUUCCGAUCGAC	chr11:130013183-130013419(+)$1	236	207	230	9.7973
AGUAAGUCUGCAUCCUCUUGCCC	chr9:117014773-117015022(+)$1	249	159	182	12.1519
CGUGGUUCCCAAAGAUGUCAAUG	chr12:49666601-49666860(+)$1	259	24	47	10.6416
uguguguguguguguguauguau	chr12:57504877-57505160(-)$1	283	71	94	11.4639
CCAGCAGAAGCAGAACGCUUGGG	chr19:51856276-51856562(-)$1	286	78	101	10.8691
AAGAUGAAAAUGUGUUCAUGCUA	chr1:19444252-19444503(-)$1	251	57	80	6.6919
UCGGGGACCACAUCAACAACGAG	chr17:75484225-75484478(+)$1	253	150	173	10.0459
AGCCAAGCCAAAGAAGGCGGCAG	chr6:26157196-26157418(+)$1	222	45	68	6.9614
AAUUGAAUGUAUUAAGUCAAUUU	chr14:102551608-102551860(-)$1	252	51	74	7.1916
aagaugauuaagaCCCCAGAUGA	chr9:100777605-100777868(+)$1	263	97	120	9.4179
UGGGAGGGGAUGGAGGAAAGAAG	chr17:7082235-7082519(-)$1	284	132	155	10.8629
CGCUUUAAGAAAGGAGUAGCUGU	chr17:1665246-1665480(+)$1	234	15	38	6.8414
CCGGGUAGGGGAAGGGCCCGCGU	chr17:37617680-37617971(+)$1	291	237	260	10.2352

#DB
((((((((........)))))..	chr1:245027514-245027764(-)$1	1	194	217	6.8402
(...((.........))...)))	chr4:174253031-174253318(-)$1	1	73	96	7.7689
.(((..((......))....)))	chr14:102549353-102549619(-)$1	1	208	231	7.0941
((((((.(......).)))))))	chr14:102550932-102551190(-)$1	1	158	181	7.1916
((((............)))))).	chr16:70696474-70696723(-)$1	1	53	76	10.4500
.(((((..(......)..)))))	chr9:117073829-117074115(+)$1	1	234	257	6.8670
(((((...........))))))(	chr14:39648306-39648551(+)$1	1	8	31	9.4775
((((((.............))))	chr2:159313486-159313829(+)$1	1	148	171	10.9268
.(((((.........))))).))	chr21:46915219-46915445(+)$1	1	107	130	10.2187
)((((((........).))))).	chr19:51857296-51857633(-)$1	1	163	186	7.2024
((((.(..........).)))).	chr16:28846373-28846609(+)$1	1	12	35	10.2907
.((...............)))))	chr20:43029850-43030149(+)$1	1	237	260	9.9138
((.(((((........)))))..	chr12:112756954-112757265(-)$1	1	16	39	6.5049
((((((.................	chr3:48456292-48456542(-)$1	1	106	129	10.2832
.(((((.((.(.........).)	chr3:184044922-184045214(+)$1	1	221	244	6.9685
..((((..........))))..)	chr11:130013183-130013419(+)$1	1	207	230	9.7973
.(((((..........)))))))	chr9:117014773-117015022(+)$1	1	159	182	12.1519
.(((((.................	chr12:49666601-49666860(+)$1	1	24	47	10.6416
((..............)))))))	chr12:57504877-57505160(-)$1	1	71	94	11.4639
(.(((...........))).)))	chr19:51856276-51856562(-)$1	1	78	101	10.8691
.(((((((......))))).)).	chr1:19444252-19444503(-)$1	1	57	80	6.6919
(((..(..........)..))))	chr17:75484225-75484478(+)$1	1	150	173	10.0459
.(((..(((......)))))).)	chr6:26157196-26157418(+)$1	1	45	68	6.9614
((((((.(......).)))))))	chr14:102551608-102551860(-)$1	1	51	74	7.1916
.(..((..........))..)..	chr9:100777605-100777868(+)$1	1	97	120	9.4179
.(((((.................	chr17:7082235-7082519(-)$1	1	132	155	10.8629
.(((((......)))))).))))	chr17:1665246-1665480(+)$1	1	15	38	6.8414
((((((.........))))).))	chr17:37617680-37617971(+)$1	1	237	260	10.2352

#PSSM
[ : 0.32	g : 0.14	f : 0.10	d : 0.10	" : 0.07	= : 0.03	h : 0.03	: : 0.03	i : 0.03	e : 0.03	! : 0.03	c : 0.03	
e : 0.39	g : 0.10	c : 0.07	f : 0.07	d : 0.07	b : 0.07	= : 0.03	" : 0.03	i : 0.03	! : 0.03	[ : 0.03	a : 0.03	
e : 0.35	c : 0.10	d : 0.10	g : 0.07	f : 0.07	b : 0.07	= : 0.03	" : 0.03	i : 0.03	[ : 0.03	w : 0.03	! : 0.03	
e : 0.46	c : 0.10	g : 0.07	f : 0.07	d : 0.07	! : 0.07	" : 0.03	i : 0.03	x : 0.03	w : 0.03	
e : 0.46	! : 0.10	b : 0.07	g : 0.07	u : 0.03	f : 0.03	i : 0.03	[ : 0.03	x : 0.03	d : 0.03	w : 0.03	c : 0.03	
e : 0.46	b : 0.07	! : 0.07	g : 0.07	t : 0.07	a : 0.07	u : 0.03	i : 0.03	x : 0.03	d : 0.03	w : 0.03	
s : 0.17	e : 0.10	r : 0.10	[ : 0.10	^ : 0.10	t : 0.07	b : 0.03	u : 0.03	! : 0.03	v : 0.03	a : 0.03	x : 0.03	w : 0.03	c : 0.03	o : 0.03	
s : 0.17	e : 0.10	r : 0.10	^ : 0.10	b : 0.07	a : 0.07	t : 0.07	u : 0.03	! : 0.03	v : 0.03	q : 0.03	x : 0.03	w : 0.03	c : 0.03	o : 0.03	
o : 0.17	s : 0.17	q : 0.10	r : 0.10	^ : 0.10	t : 0.07	u : 0.03	a : 0.03	v : 0.03	x : 0.03	b : 0.03	w : 0.03	c : 0.03	
o : 0.24	s : 0.17	q : 0.10	r : 0.10	^ : 0.10	t : 0.07	u : 0.03	v : 0.03	x : 0.03	[ : 0.03	w : 0.03	
o : 0.24	s : 0.17	q : 0.10	r : 0.10	^ : 0.10	t : 0.07	u : 0.03	v : 0.03	x : 0.03	a : 0.03	w : 0.03	
o : 0.24	s : 0.17	r : 0.14	q : 0.10	^ : 0.10	t : 0.07	u : 0.03	v : 0.03	x : 0.03	w : 0.03	
o : 0.21	s : 0.17	r : 0.14	q : 0.10	^ : 0.10	t : 0.07	u : 0.03	v : 0.03	x : 0.03	w : 0.03	e : 0.03	
o : 0.21	s : 0.17	r : 0.14	q : 0.10	^ : 0.10	t : 0.07	u : 0.03	v : 0.03	x : 0.03	w : 0.03	e : 0.03	
s : 0.17	r : 0.14	q : 0.10	^ : 0.10	a : 0.07	o : 0.07	t : 0.07	e : 0.07	b : 0.03	u : 0.03	v : 0.03	x : 0.03	w : 0.03	
s : 0.17	e : 0.14	^ : 0.10	q : 0.07	b : 0.07	] : 0.07	a : 0.07	t : 0.07	u : 0.03	v : 0.03	x : 0.03	r : 0.03	w : 0.03	c : 0.03	
e : 0.24	g : 0.10	^ : 0.10	b : 0.07	f : 0.07	a : 0.07	c : 0.07	4 : 0.03	2 : 0.03	v : 0.03	] : 0.03	x : 0.03	r : 0.03	d : 0.03	
e : 0.24	g : 0.10	^ : 0.10	f : 0.07	2 : 0.07	c : 0.07	3 : 0.03	4 : 0.03	v : 0.03	] : 0.03	x : 0.03	r : 0.03	d : 0.03	b : 0.03	a : 0.03	
e : 0.28	g : 0.10	^ : 0.10	f : 0.07	d : 0.07	c : 0.07	2 : 0.07	3 : 0.03	4 : 0.03	v : 0.03	b : 0.03	r : 0.03	] : 0.03	
e : 0.28	g : 0.10	d : 0.10	^ : 0.10	f : 0.07	] : 0.07	3 : 0.03	4 : 0.03	i : 0.03	b : 0.03	r : 0.03	c : 0.03	2 : 0.03	
e : 0.21	c : 0.10	g : 0.10	d : 0.10	^ : 0.10	f : 0.07	] : 0.07	a : 0.07	h : 0.03	i : 0.03	2 : 0.03	b : 0.03	
g : 0.14	c : 0.10	e : 0.10	d : 0.10	^ : 0.10	f : 0.07	b : 0.07	] : 0.07	2 : 0.07	6 : 0.03	h : 0.03	i : 0.03	7 : 0.03	
c : 0.14	g : 0.14	b : 0.10	^ : 0.10	] : 0.07	e : 0.07	d : 0.07	6 : 0.03	h : 0.03	B : 0.03	i : 0.03	: : 0.03	3 : 0.03	7 : 0.03	2 : 0.03	

#score	251.171979737825
#seq	28
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_transcript_m2_run1.txt

#BEAR
ccc[eeeeepppppppeeeee33	chr1:213349642-213349932(+)$1	290	217	240	15.5957
ddd"""cccpppppppcccdddd	chr16:1827855-1828134(-)$1	279	110	133	15.1650
hhhhhddddpppppppdddd22h	chr2:201724291-201724554(-)$1	263	186	209	14.1369
b[bbeeeeepppppppeeeee]b	chr16:2570667-2570913(+)$1	246	49	72	14.3001
iiiiiiiiipppppppiiiiiii	chr11:64681209-64681474(-)$1	265	226	249	14.6456
hhhhhddddpppppppdddd22h	chr1:36501710-36501976(+)$1	266	166	189	14.1369
[eeeee[bbpppppppbb]eeee	chr1:228589666-228589939(-)$1	273	66	89	13.4055
ggggg[cccpppppppcccgggg	chr20:60907564-60907827(-)$1	263	181	204	15.1996
bb!!eeeeepppppppeeeeebb	chr18:712397-712727(-)$1	330	183	206	14.4771
!!bbeeeeepppppppeeeee]b	chrX:70764596-70764860(+)$1	264	190	213	14.3974
eeee[ddddpppppppdddd22e	chr1:210004143-210004486(+)$1	343	59	82	14.7596
D:cccddddpppppppdddd]cc	chr10:70091812-70092081(+)$1	269	134	157	13.3908
hh"""cccrrrrrrrrrccc22h	chr12:54675188-54675413(+)$1	225	20	43	11.2553
ddd[ddddrrrrrrrrrdddddd	chr16:89650377-89650614(+)$1	237	176	199	10.9204
fffff[cccpppppppccc]fff	chr9:131469085-131469387(+)$1	302	226	249	14.1140
&&&&ccc[apppppppa]ccc33	chr1:145456591-145456824(-)$1	233	126	149	12.7724
ff!!eeeeepppppppeeeee33	chr9:100773565-100773771(+)$1	206	134	157	15.4164
d[bb!!cccpppppppccc22bb	chr10:72500657-72500972(+)$1	315	244	267	14.4046
%%%%eeeeepppppppeeeee44	chr19:8528272-8528490(+)$1	218	10	33	12.9030
e[ccc[cccpppppppccc]ccc	chr17:80115569-80115865(-)$1	296	237	260	15.1237
dddd[cccrrrrrrrrrcccddd	chrX:154009846-154010129(-)$1	283	81	104	10.8475
ccc[eeeeepppppppeeeee22	chr1:110581724-110582019(+)$1	295	87	110	15.2911
hhhhhhhhapppppppa]hhhhh	chr7:148515005-148515259(-)$1	254	116	139	12.6525
b[gggggggpppppppggggggg	chr5:225977-226271(+)$1	294	135	158	14.6785
%%%%eeeeepppppppeeeee44	chr11:66366584-66366860(+)$1	276	194	217	12.9030
e"""ddddapppppppa]dddd3	chr16:67202842-67203121(+)$1	279	112	135	15.0786
bbddddcccpppppppccc]ddd	chr1:226053488-226053768(-)$1	280	78	101	14.6114
dddd[ddddpppppppdddd]dd	chr7:148581163-148581450(-)$1	287	155	178	14.8010
ff!!eeeeepppppppeeeee22	chr17:57784608-57784876(-)$1	268	74	97	15.1117
d[gggggggpppppppggggggg	chrX:13347329-13347573(+)$1	244	4	27	14.7277
bbgggggggpppppppggggggg	chr2:38975614-38975888(-)$1	274	200	223	14.3968
b]ddddcccpppppppccc:ddd	chr1:19430993-19431266(-)$1	273	76	99	13.4258
"eeeee!!apppppppa22eeee	chr7:142654915-142655159(-)$1	244	151	174	13.6743
eee!!ddddpppppppdddd]ee	chr18:77875392-77875724(+)$1	332	209	232	14.9981
d"""eeeeepppppppeeeee44	chrX:13329772-13329987(+)$1	215	67	90	15.3933
hh"""ddddrrrrrrrrrdddd6	chr1:52882206-52882452(+)$1	246	182	205	10.7507
b####ddddrrrrrrrrrdddd4	chr9:116170933-116171278(-)$1	345	29	52	11.4081
cc[ffffffpppppppffffff]	chr3:9691224-9691527(+)$1	303	192	215	13.2828
::gggggggpppppppggggggg	chr1:23650080-23650326(-)$1	246	98	121	13.0717
dddd[ddddpppppppdddd]dd	chr1:205718983-205719255(-)$1	272	53	76	14.8010
:bb!!ddddpppppppdddd22b	chr22:22312453-22312705(-)$1	252	58	81	14.2601
ffffffcccpppppppccc]fff	chrX:73061117-73061416(-)$1	299	133	156	13.9079
Eccc!!cccpppppppccc22cc	chr22:19874822-19875097(-)$1	275	215	238	14.6043
ddd!!ddddpppppppdddd]dd	chr11:61913065-61913317(+)$1	252	186	209	15.2437
hh"""a[bbpppppppbb]a22h	chr3:195781484-195781738(-)$1	254	127	150	13.7107
gg"""ddddrrrrrrrrrdddd3	chr2:74684391-74684693(+)$1	302	168	191	11.6272
!!ccc!!bbpppppppbbccc22	chr11:93517727-93518064(+)$1	337	199	222	14.1026
:dddd!!bbpppppppbb22ddd	chr14:102348231-102348503(+)$1	272	43	66	12.2945
Dbb[eeeeepppppppeeeee22	chr13:107220126-107220448(-)$1	322	196	219	14.1204
CCccc[cccpppppppccc]ccc	chr1:153912118-153912376(-)$1	258	138	161	13.3221
ffffff[bbpppppppbb333ff	chr11:596833-597110(+)$1	277	242	265	12.7908
:eeeeecccpppppppccc333e	chr8:124408420-124408685(-)$1	265	231	254	14.5922
iiiiiiiiipppppppiiiiiii	chr11:67810815-67811068(+)$1	253	172	195	14.6456
c[gggggggrrrrrrrrrggggg	chr7:99158051-99158332(+)$1	281	114	137	11.0995
ccc"""cccpppppppccc333c	chr4:89670804-89671146(-)$1	342	253	276	15.9956
meeeeecccpppppppcccdddd	chr6:33382417-33382715(+)$1	298	192	215	14.2004
[a!!eeeeepppppppeeeee22	chr10:126480182-126480515(-)$1	333	181	204	15.4176
dddd!!cccpppppppccc22dd	chr10:120795613-120795865(-)$1	252	132	155	14.9829
c:gggggggpppppppggggggg	chr9:139730114-139730390(+)$1	276	95	118	13.8546
ccc!!ddddpppppppddddccc	chr12:76449820-76450042(-)$1	222	91	114	15.4066
e[ddddcccpppppppccc]ddd	chr22:38889924-38890162(-)$1	238	146	169	14.8372

#otherMatches

#Seq PSSM
AGUUCAGUCAUAAAUCGACUGCA	chr1:213349642-213349932(+)$1	290	217	240	15.5957
UGGACCUGGACAAAUACCGCCAC	chr16:1827855-1828134(-)$1	279	110	133	15.1650
GUUGGCAAUACAGGUAAUUGAUU	chr2:201724291-201724554(-)$1	263	186	209	14.1369
ugcggggCCGAGGUCAGGCCCGC	chr16:2570667-2570913(+)$1	246	49	72	14.3001
GUGGGGGCUGCUGGAUGGUCCCC	chr11:64681209-64681474(-)$1	265	226	249	14.6456
UAGCCAGGUUUAUCUUACCUAAG	chr1:36501710-36501976(+)$1	266	166	189	14.1369
CUCUCCCGCAGGCGAAGCUGGAG	chr1:228589666-228589939(-)$1	273	66	89	13.4055
AGGGGCUGCUCUCCCUGCACCCC	chr20:60907564-60907827(-)$1	263	181	204	15.1996
GCUUCCCCACGUCGCUUGGGGGC	chr18:712397-712727(-)$1	330	183	206	14.4771
UUGCCUGCUGGUGACAAGCAGAG	chrX:70764596-70764860(+)$1	264	190	213	14.3974
AAGUUUCUGGCUACCACAGACUA	chr1:210004143-210004486(+)$1	343	59	82	14.7596
GAGUCGGCGUAACUAUCGCCUGA	chr10:70091812-70092081(+)$1	269	134	157	13.3908
GGAGGGUUGAGCUUUGAAACAAC	chr12:54675188-54675413(+)$1	225	20	43	11.2553
GGAACCGGUUCGAAAACCCGGUC	chr16:89650377-89650614(+)$1	237	176	199	10.9204
CAGCCCUGGCCCUCUCCUAAGGC	chr9:131469085-131469387(+)$1	302	226	249	14.1140
UUGACAAUGGAGAGGACUUUGGU	chr1:145456591-145456824(-)$1	233	126	149	12.7724
CCUAUUUGUAAUUACAACAAAAG	chr9:100773565-100773771(+)$1	206	134	157	15.4164
CUACGAGCCUGACGAUGGUGAGU	chr10:72500657-72500972(+)$1	315	244	267	14.4046
UUUUUAGUUUGUUUAUAACUGUC	chr19:8528272-8528490(+)$1	218	10	33	12.9030
GAGAGGUGGGUGCCCGCUAGCUC	chr17:80115569-80115865(-)$1	296	237	260	15.1237
GAAGAUGGGAAGGAGUACCACUU	chrX:154009846-154010129(-)$1	283	81	104	10.8475
CUGAGCUGGAUACCAACCAGCAC	chr1:110581724-110582019(+)$1	295	87	110	15.2911
GGAGGCCGCAGAAGAGGACGGCU	chr7:148515005-148515259(-)$1	254	116	139	12.6525
GUGUGGCUGAUCGGACUGGCCAC	chr5:225977-226271(+)$1	294	135	158	14.6785
UACAAAUCUAAUCAUAGGAUUCU	chr11:66366584-66366860(+)$1	276	194	217	12.9030
UCCAAGGGCGAGAAUGGACCCUG	chr16:67202842-67203121(+)$1	279	112	135	15.0786
UCCCUGCUGUAUUUCCCGGACAG	chr1:226053488-226053768(-)$1	280	78	101	14.6114
cgacgCGCGGGAACAACGCGAGU	chr7:148581163-148581450(-)$1	287	155	178	14.8010
GCUCACGCGAUAGAAACGUGUUC	chr17:57784608-57784876(-)$1	268	74	97	15.1117
GGUUUUCAUGGUCCUAGUGGAAA	chrX:13347329-13347573(+)$1	244	4	27	14.7277
UUAUUAUUAAAUUCACUGGUAGU	chr2:38975614-38975888(-)$1	274	200	223	14.3968
CACACUGACUGCACUUGUCAUCC	chr1:19430993-19431266(-)$1	273	76	99	13.4258
CGCUGAGACUUCUGAUGAGUCAG	chr7:142654915-142655159(-)$1	244	151	174	13.6743
UAAGAUUCCUCAAAAUGGAAAUU	chr18:77875392-77875724(+)$1	332	209	232	14.9981
CUGAUGUGGGCCUAAACCACAGC	chrX:13329772-13329987(+)$1	215	67	90	15.3933
UGGCCUCCUGUGGAUAUAAGGAU	chr1:52882206-52882452(+)$1	246	182	205	10.7507
CAGAAAGGCAAGAAGGAGGCCUC	chr9:116170933-116171278(-)$1	345	29	52	11.4081
CGGCUCUAAGGUGAGAUUGGAGG	chr3:9691224-9691527(+)$1	303	192	215	13.2828
CAGGUAUUUGUAGGCAAAAUACC	chr1:23650080-23650326(-)$1	246	98	121	13.0717
UCCCAUCGGCUGAAGUUCGGGGG	chr1:205718983-205719255(-)$1	272	53	76	14.8010
CCCUAGUCCACCCUCAGGACCUG	chr22:22312453-22312705(-)$1	252	58	81	14.2601
GGGAGCAGUUUGCCCUACUAGCU	chrX:73061117-73061416(-)$1	299	133	156	13.9079
CCCUCCUGCUUCAUGUGCACAAG	chr22:19874822-19875097(-)$1	275	215	238	14.6043
AGGUGGGCGGGGUGGGCGCUGUC	chr11:61913065-61913317(+)$1	252	186	209	15.2437
AAAGACAGCACAGCUAGCAGGAU	chr3:195781484-195781738(-)$1	254	127	150	13.7107
CUGAAGCGCGAGGAGCGGGCGCG	chr2:74684391-74684693(+)$1	302	168	191	11.6272
AAGGUAAGGCCUGCAUCCGCUGC	chr11:93517727-93518064(+)$1	337	199	222	14.1026
UGGUGGUCAACUUGCGUGCGCAC	chr14:102348231-102348503(+)$1	272	43	66	12.2945
AGCCGGAGCUCGUCCCGCUCCAA	chr13:107220126-107220448(-)$1	322	196	219	14.1204
UGACAGACUACGAGGCAGUGUGU	chr1:153912118-153912376(-)$1	258	138	161	13.3221
GCGGUCCCCGGGGUUAGGUUUGG	chr11:596833-597110(+)$1	277	242	265	12.7908
ACCCGCGGCGACCACAGCCAAAG	chr8:124408420-124408685(-)$1	265	231	254	14.5922
GGGGUCCUGGGCAGAGCGGGACC	chr11:67810815-67811068(+)$1	253	172	195	14.6456
UGUCCUCCAGAGCAGUGAUGGAG	chr7:99158051-99158332(+)$1	281	114	137	11.0995
GCCUCAUCCUCUCCCUGGACAUG	chr4:89670804-89671146(-)$1	342	253	276	15.9956
ACUGGUCCAGGGGGGAUGGGGGA	chr6:33382417-33382715(+)$1	298	192	215	14.2004
GGAGGACGGUUUCGUCCCGUCGG	chr10:126480182-126480515(-)$1	333	181	204	15.4176
GAGCGGGACCCUCCUCGUCGAGU	chr10:120795613-120795865(-)$1	252	132	155	14.9829
GGCAGCUGGAGACGAACCAGCUG	chr9:139730114-139730390(+)$1	276	95	118	13.8546
CUUAAUCAAGGAGGAAUUGAAAG	chr12:76449820-76450042(-)$1	222	91	114	15.4066
GCACCAAGGCAAUUAACCUCUGG	chr22:38889924-38890162(-)$1	238	146	169	14.8372

#DB
(((.(((((.......)))))..	chr1:213349642-213349932(+)$1	1	217	240	15.5957
(((...(((.......)))))))	chr16:1827855-1828134(-)$1	1	110	133	15.1650
(((((((((.......))))..)	chr2:201724291-201724554(-)$1	1	186	209	14.1369
(.(((((((.......))))).)	chr16:2570667-2570913(+)$1	1	49	72	14.3001
(((((((((.......)))))))	chr11:64681209-64681474(-)$1	1	226	249	14.6456
(((((((((.......))))..)	chr1:36501710-36501976(+)$1	1	166	189	14.1369
.(((((.((.......)).))))	chr1:228589666-228589939(-)$1	1	66	89	13.4055
(((((.(((.......)))))))	chr20:60907564-60907827(-)$1	1	181	204	15.1996
((..(((((.......)))))))	chr18:712397-712727(-)$1	1	183	206	14.4771
..(((((((.......))))).)	chrX:70764596-70764860(+)$1	1	190	213	14.3974
((((.((((.......))))..)	chr1:210004143-210004486(+)$1	1	59	82	14.7596
(.(((((((.......)))).))	chr10:70091812-70092081(+)$1	1	134	157	13.3908
((...(((.........)))..)	chr12:54675188-54675413(+)$1	1	20	43	11.2553
(((.((((.........))))))	chr16:89650377-89650614(+)$1	1	176	199	10.9204
(((((.(((.......))).)))	chr9:131469085-131469387(+)$1	1	226	249	14.1140
....(((.(.......).)))..	chr1:145456591-145456824(-)$1	1	126	149	12.7724
((..(((((.......)))))..	chr9:100773565-100773771(+)$1	1	134	157	15.4164
(.((..(((.......)))..))	chr10:72500657-72500972(+)$1	1	244	267	14.4046
....(((((.......)))))..	chr19:8528272-8528490(+)$1	1	10	33	12.9030
(.(((.(((.......))).)))	chr17:80115569-80115865(-)$1	1	237	260	15.1237
((((.(((.........))))))	chrX:154009846-154010129(-)$1	1	81	104	10.8475
(((.(((((.......)))))..	chr1:110581724-110582019(+)$1	1	87	110	15.2911
(((((((((.......).)))))	chr7:148515005-148515259(-)$1	1	116	139	12.6525
(.(((((((.......)))))))	chr5:225977-226271(+)$1	1	135	158	14.6785
....(((((.......)))))..	chr11:66366584-66366860(+)$1	1	194	217	12.9030
(...(((((.......).)))).	chr16:67202842-67203121(+)$1	1	112	135	15.0786
(((((((((.......))).)))	chr1:226053488-226053768(-)$1	1	78	101	14.6114
((((.((((.......)))).))	chr7:148581163-148581450(-)$1	1	155	178	14.8010
((..(((((.......)))))..	chr17:57784608-57784876(-)$1	1	74	97	15.1117
(.(((((((.......)))))))	chrX:13347329-13347573(+)$1	1	4	27	14.7277
(((((((((.......)))))))	chr2:38975614-38975888(-)$1	1	200	223	14.3968
).))))(((.......))).(((	chr1:19430993-19431266(-)$1	1	76	99	13.4258
.(((((..(.......)..))))	chr7:142654915-142655159(-)$1	1	151	174	13.6743
(((..((((.......)))).))	chr18:77875392-77875724(+)$1	1	209	232	14.9981
(...(((((.......)))))..	chrX:13329772-13329987(+)$1	1	67	90	15.3933
((...((((.........)))).	chr1:52882206-52882452(+)$1	1	182	205	10.7507
(....((((.........)))).	chr9:116170933-116171278(-)$1	1	29	52	11.4081
((.((((((.......)))))).	chr3:9691224-9691527(+)$1	1	192	215	13.2828
..(((((((.......)))))))	chr1:23650080-23650326(-)$1	1	98	121	13.0717
((((.((((.......)))).))	chr1:205718983-205719255(-)$1	1	53	76	14.8010
.((..((((.......))))..)	chr22:22312453-22312705(-)$1	1	58	81	14.2601
(((((((((.......))).)))	chrX:73061117-73061416(-)$1	1	133	156	13.9079
)(((..(((.......)))..))	chr22:19874822-19875097(-)$1	1	215	238	14.6043
(((..((((.......)))).))	chr11:61913065-61913317(+)$1	1	186	209	15.2437
((...(.((.......)).)..)	chr3:195781484-195781738(-)$1	1	127	150	13.7107
((...((((.........)))).	chr2:74684391-74684693(+)$1	1	168	191	11.6272
..(((..((.......)))))..	chr11:93517727-93518064(+)$1	1	199	222	14.1026
.((((..((.......))..)))	chr14:102348231-102348503(+)$1	1	43	66	12.2945
)((.(((((.......)))))..	chr13:107220126-107220448(-)$1	1	196	219	14.1204
(((((.(((.......))).)))	chr1:153912118-153912376(-)$1	1	138	161	13.3221
((((((.((.......))...))	chr11:596833-597110(+)$1	1	242	265	12.7908
.((((((((.......)))...)	chr8:124408420-124408685(-)$1	1	231	254	14.5922
(((((((((.......)))))))	chr11:67810815-67811068(+)$1	1	172	195	14.6456
(.(((((((.........)))))	chr7:99158051-99158332(+)$1	1	114	137	11.0995
(((...(((.......)))...)	chr4:89670804-89671146(-)$1	1	253	276	15.9956
.)))))(((.......)))((((	chr6:33382417-33382715(+)$1	1	192	215	14.2004
.(..(((((.......)))))..	chr10:126480182-126480515(-)$1	1	181	204	15.4176
((((..(((.......)))..))	chr10:120795613-120795865(-)$1	1	132	155	14.9829
).(((((((.......)))))))	chr9:139730114-139730390(+)$1	1	95	118	13.8546
(((..((((.......)))))))	chr12:76449820-76450042(-)$1	1	91	114	15.4066
(.(((((((.......))).)))	chr22:38889924-38890162(-)$1	1	146	169	14.8372

#PSSM
d : 0.16	c : 0.11	b : 0.11	h : 0.09	e : 0.08	f : 0.08	: : 0.06	i : 0.03	[ : 0.03	g : 0.03	! : 0.03	D : 0.03	% : 0.03	& : 0.01	" : 0.01	E : 0.01	C : 0.01	m : 0.01	
d : 0.13	[ : 0.11	c : 0.09	h : 0.09	e : 0.09	b : 0.08	f : 0.08	: : 0.04	i : 0.03	g : 0.03	! : 0.03	% : 0.03	" : 0.03	& : 0.01	] : 0.01	# : 0.01	C : 0.01	a : 0.01	
d : 0.18	c : 0.14	g : 0.11	e : 0.09	" : 0.09	b : 0.08	! : 0.06	h : 0.04	f : 0.04	i : 0.03	% : 0.03	& : 0.01	# : 0.01	[ : 0.01	
" : 0.13	! : 0.13	d : 0.13	g : 0.11	e : 0.08	c : 0.08	[ : 0.06	f : 0.06	h : 0.04	b : 0.04	i : 0.03	% : 0.03	& : 0.01	# : 0.01	
e : 0.26	g : 0.11	! : 0.11	" : 0.09	d : 0.09	c : 0.08	[ : 0.06	f : 0.06	h : 0.04	i : 0.03	# : 0.01	
d : 0.29	e : 0.26	g : 0.09	! : 0.08	[ : 0.06	c : 0.04	f : 0.04	" : 0.03	i : 0.03	h : 0.01	a : 0.01	
c : 0.29	d : 0.24	e : 0.19	g : 0.09	[ : 0.04	! : 0.04	i : 0.03	h : 0.01	f : 0.01	
c : 0.27	d : 0.24	e : 0.19	g : 0.09	b : 0.08	i : 0.03	[ : 0.01	h : 0.01	! : 0.01	f : 0.01	
c : 0.24	d : 0.21	e : 0.19	g : 0.09	b : 0.08	a : 0.06	r : 0.04	i : 0.03	f : 0.01	
p : 0.88	r : 0.11	
p : 0.88	r : 0.11	
p : 0.88	r : 0.11	
p : 0.88	r : 0.11	
p : 0.88	r : 0.11	
p : 0.88	r : 0.11	
p : 0.88	r : 0.11	
c : 0.24	e : 0.19	d : 0.16	r : 0.11	b : 0.08	g : 0.08	a : 0.06	i : 0.03	f : 0.01	
c : 0.27	e : 0.19	d : 0.18	b : 0.08	g : 0.08	r : 0.06	] : 0.04	i : 0.03	2 : 0.01	f : 0.01	
c : 0.31	d : 0.24	e : 0.19	g : 0.09	i : 0.03	] : 0.03	2 : 0.03	h : 0.01	f : 0.01	3 : 0.01	
d : 0.27	e : 0.22	g : 0.11	] : 0.09	c : 0.06	2 : 0.06	3 : 0.04	i : 0.03	h : 0.01	: : 0.01	f : 0.01	a : 0.01	
e : 0.22	d : 0.19	2 : 0.14	g : 0.11	] : 0.08	c : 0.08	f : 0.04	3 : 0.04	i : 0.03	h : 0.01	
d : 0.26	2 : 0.18	g : 0.11	3 : 0.08	c : 0.08	f : 0.06	e : 0.04	4 : 0.04	] : 0.03	i : 0.03	b : 0.03	h : 0.01	
d : 0.19	g : 0.11	c : 0.09	3 : 0.08	h : 0.08	b : 0.08	e : 0.08	2 : 0.08	4 : 0.06	f : 0.04	i : 0.03	6 : 0.01	] : 0.01	

#score	851.4450589311906
#seq	61
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_UTR_m1_run2.txt

#BEAR
eeeeecccdddd[bbmmmmbb333dddd]ccc4	chr5:179249804-179250048(+)$1	244	83	116	11.2403
cccc[ccc"""ddddmmmmddddcccccc]ccc	chr3:49723273-49723534(-)$1	261	99	132	12.2270
:dddd!!ccc!!cccmmmmccc22ccc22dddd	chr11:67074691-67074958(+)$1	267	196	229	12.8022
gggggggccc!!cccnnnnnccc22cccccc[c	chr6:3298332-3298660(-)$1	328	62	95	11.3953
ddd"""ccc[eeeeemmmmeeeee]ccc22ddd	chr5:179047898-179048159(-)$1	261	180	213	10.7534
ggggg"""dddd[bbmmmmbbddddggggggg]	chr14:21544770-21545033(+)$1	263	110	143	11.7306
ccc[a[==========lll==========]acc	chr16:31098901-31099183(-)$1	282	69	102	12.9185
ff####bb[bb[cccmmmmccc]bb]bb333ff	chr3:48669120-48669382(-)$1	262	174	207	12.0794
:eeeee[eeeeecccmmmmccc22eeeee]eee	chr3:48731576-48731827(-)$1	251	10	43	11.4997
!!==========oooooo==========333ee	chr17:48445559-48445808(-)$1	249	75	108	12.0310
ddd[a[ffffffcccmmmmccc333ffffffa]	chr1:22176886-22177134(-)$1	248	180	213	12.5913
!bb[ccc[ccc[cccmmmmccc]ccc]ccc]bb	chr16:3727502-3727813(-)$1	311	96	129	14.3592
ddd[ccc[gggggggmmmmggggggg]ccc]dd	chr7:44091278-44091535(+)$1	257	102	135	12.6877
eeee!!ccc[a[aooooooa]a]ccc]eeeee:	chr3:184098860-184099135(+)$1	275	17	50	11.1398
============bboooooobb]==========	chr3:50085526-50085781(+)$1	255	206	239	12.3090
cccggggggg"""ccclllccc333ggggggg:	chr11:802781-803038(-)$1	257	37	70	12.1469
b[ccc!!ccc!!cccmmmmcccccc333ccc]b	chr3:48562984-48563259(-)$1	275	169	202	14.2965
"ffffff[ddddcccmmmmccc]dddd4444ff	chr17:21215309-21215555(+)$1	246	50	83	12.8830
dddd####ccc[a[bbmmmmbb]a]ccc333dd	chr21:44515724-44516010(-)$1	286	196	229	11.6235
cc!!dddd"""ddddmmmmdddd333dddd]cc	chr10:99517252-99517512(+)$1	260	149	182	11.1800
ccc[===========nnnnn===========cc	chr11:722530-722777(+)$1	247	201	234	11.8788
ccceeeee[ccc[ccclllccc]ccc]eeeee]	chr16:89805438-89805698(+)$1	260	215	248	12.3988
ggggggggg[eeeeemmmmeeeee4444ggggg	chr4:83345895-83346193(-)$1	298	246	279	11.5150
b[bbdddd[ccccccmmmmccc333cccdddd]	chr17:76200747-76201030(+)$1	283	158	191	12.6890
ggggg"""gggggggmmmmggggggg333gggg	chr19:19101827-19102071(-)$1	244	185	218	13.5753
fffff"""gggggggmmmmggggggg4444fff	chr11:62609027-62609233(-)$1	206	129	162	12.4464
fffff!!dddd[cccmmmmccc]dddd]fffff	chr14:39745983-39746279(+)$1	296	145	178	12.9414
ggggg[eeeee[cccmmmmccc]eeeee]gggg	chr2:174228603-174228853(+)$1	250	101	134	13.6490
e[ccc!!dddd[cccmmmmccc]ddddccc]ee	chr9:74313008-74313266(-)$1	258	8	41	14.0907
bbeeeee"""bbcccmmmmccc]bb4444eeee	chr7:150774225-150774469(-)$1	244	41	74	12.4121
======####acccnnnnnccc]a4444=====	chr1:8075638-8075879(-)$1	241	42	75	12.5770
e[eeeee[ccc[cccmmmmccc]ccc]eeeee]	chr5:65454896-65455160(+)$1	264	57	90	14.6025
""cccccc"""ddddmmmmddddccc]cccfff	chr11:62565991-62566210(-)$1	219	75	108	11.9347
dddd[a[bb[addddmmmmdddd]a]bb]a]dd	chr19:1271418-1271663(+)$1	245	66	99	10.4365
dddd[a!!gggggggmmmmggggggg]a]dddd	chr5:134121002-134121291(+)$1	289	199	232	12.3544
========[dddd[ammmma]dddd]=======	chr9:140347534-140347780(-)$1	246	94	127	12.7247
""ggggggg[a[cccmmmmccc]a]ggggggg5	chrX:20252795-20253086(-)$1	291	134	167	14.0664
[eeeee!!ccc[cccmmmmcccccceeeee]gg	chr2:234198338-234198607(+)$1	269	112	145	14.1488
ggggggg!!ccccccmmmmccc]cccggggggg	chr2:242609994-242610241(+)$1	247	81	114	14.9361
ccc[eeeee"""cccmmmmccc333eeeee]cc	chr6:56330862-56331132(-)$1	270	82	115	14.1091
eccc!!ccc[cccooooooccc]ccc]ccc]ee	chr1:36773828-36774091(+)$1	263	194	227	13.1662
Feeeee!!ccc!!ccclllccc]ccceeeeecc	chr8:144668911-144669185(-)$1	274	37	70	12.4580
=========[ccc[bbmmmmbb]ccc=======	chr11:75153517-75153798(-)$1	281	72	105	12.5154
a[eeeee[dddd!!ammmma333dddd]eeeee	chr14:21679349-21679619(-)$1	270	89	122	11.8173
:cccccc[ccc[ccclllcccccc]ccc]cccg	chr16:448817-449117(+)$1	300	129	162	12.2143
ggg!!bbccc[a[bbmmmmbb]accc]bbgggg	chr3:52326152-52326379(+)$1	227	153	186	11.4834
:==========cccnnnnnccc]==========	chr20:30193698-30193955(+)$1	257	7	40	12.0311
ccc[ccc!!ffffffmmmmffffffccc]ccc]	chr1:1333958-1334198(-)$1	240	137	170	11.6339
d[ddddaccc!!cccmmmmccc22ccc]a]ddd	chr12:57499278-57499524(-)$1	246	85	118	13.5409
ggggga[dddd[cccmmmmccc]dddd22a]gg	chr17:1674957-1675268(+)$1	311	26	59	13.7747
!!ccc!!dddd[cccooooooccc]dddd]ccc	chr7:99947209-99947537(+)$1	328	162	195	11.7966
eee!!bb[ccc[cccmmmmccc22cccbb22ee	chr16:89857824-89858094(-)$1	270	44	77	13.1428
"ffffff[ccc[cccooooooccc]ccc4444f	chr14:103574552-103574839(+)$1	287	187	220	11.9300
ddd[eeeeeccc[bbmmmmbb]ccc]eeeeedd	chr6:167453581-167453843(+)$1	262	51	84	10.8906
[ccc!!gggggggooooooggggggg]ccc]ee	chr10:99236601-99236862(-)$1	261	187	220	11.6797
bb]cccccc[a[ccclllccca]ccceeeee!!	chr8:19675641-19675881(+)$1	240	77	110	11.8098
Dcccggggggg[cccooooooccc]ggggggg6	chr20:398018-398277(+)$1	259	51	84	11.0786

#otherMatches

#Seq PSSM
GCCCAUUCCAGCAGCUUAUGUCCAGCUGAGAAC	chr5:179249804-179250048(+)$1	244	83	116	11.2403
GGCGAGGUCUCGGCCUGAUGGCUGCCCGCACCC	chr3:49723273-49723534(-)$1	261	99	132	12.2270
AUCUCCAUCCAGACCAUGUGGUAAGGACAGAGA	chr11:67074691-67074958(+)$1	267	196	229	12.8022
CAGUUUUAUCUCCCCUGAUUGGGCUGAUGCGUG	chr6:3298332-3298660(-)$1	328	62	95	11.3953
GUCCUGACACGGCCAAUGAUGGCUUUGUACGGC	chr5:179047898-179048159(-)$1	261	180	213	10.7534
UUUCUGAGUCCUUGGGUGCCCAGGAAGAAACCC	chr14:21544770-21545033(+)$1	263	110	143	11.7306
GACACGGGGCCUAGGUCUUACUUGGGUCUGGGU	chr16:31098901-31099183(-)$1	282	69	102	12.9185
GCCCCAGAGCAAGGUUGGCACCGUGGUCACUGC	chr3:48669120-48669382(-)$1	262	174	207	12.0794
UUCUUUUGGGACUGUUGAAACAUUGUCUUUAAG	chr3:48731576-48731827(-)$1	251	10	43	11.4997
AAGUCUGUCCCAAAAUUCUGGGACGGACCACCU	chr17:48445559-48445808(-)$1	249	75	108	12.0310
CCGCCGACUCGGGCGAGUACGUGUGCCGAGUGU	chr1:22176886-22177134(-)$1	248	180	213	12.5913
UGGGAGUGUCUGCUCUCUGGAGGGGAGGCUGCC	chr16:3727502-3727813(-)$1	311	96	129	14.3592
CAGGGAAUGUCAGGGCCACCCCUGACCUUCACU	chr7:44091278-44091535(+)$1	257	102	135	12.6877
gcccagagagaugaaguagcuugucuaggguca	chr3:184098860-184099135(+)$1	275	17	50	11.1398
AUUUUUGGUACUGCAAACGAGUAAGUACCAAGA	chr3:50085526-50085781(+)$1	255	206	239	12.3090
GCCCAGCUGUGGAGGAGAGUCUGAAACAGCUGC	chr11:802781-803038(-)$1	257	37	70	12.1469
GAAAUGACCUACGAGGAAAUUCAGGAUAAUUAU	chr3:48562984-48563259(-)$1	275	169	202	14.2965
ACCAGGAUGGGUGGGAGCCCCCAACCCUCGCUC	chr17:21215309-21215555(+)$1	246	50	83	12.8830
AGUUUUUUGAGGUGAGAGAACUGAACUCUGUGA	chr21:44515724-44516010(-)$1	286	196	229	11.6235
AGCUGCAGUAAUUGUGGAAACAGCUUCUGCUCU	chr10:99517252-99517512(+)$1	260	149	182	11.1800
GGGAGCCUCCUGUGGAUGUGCUGCAGGAGGCCC	chr11:722530-722777(+)$1	247	201	234	11.8788
CCUCUUCCCUGAUGGCCGCGUCUUCAUGGAAGU	chr16:89805438-89805698(+)$1	260	215	248	12.3988
UAGUGUACAAGACACCAUUGUGUCCAACUGUAU	chr4:83345895-83346193(-)$1	298	246	279	11.5150
CAGGCACCCUGGACCACAUGGUAGACCAGGUGA	chr17:76200747-76201030(+)$1	283	158	191	12.6890
UCUGGCUUGUUUCCAUCACUGGAAAUCACUUAG	chr19:19101827-19102071(-)$1	244	185	218	13.5753
acggugcacUCUCCCUUCGGGGAGAGAACAACC	chr11:62609027-62609233(-)$1	206	129	162	12.4464
AUCUUGAAGGUUGUGGCAGCACUGCCUGAAGGU	chr14:39745983-39746279(+)$1	296	145	178	12.9414
UCUUUAUUUGUGUGGCCUUCUAGACAAACGAAG	chr2:174228603-174228853(+)$1	250	101	134	13.6490
UAUUCAUUUUGUAAUUUAUGUUUUAAGGAAAAG	chr9:74313008-74313266(-)$1	258	8	41	14.0907
GGACCUGACUGUGCCUCCAGGCUACUGCACAGG	chr7:150774225-150774469(-)$1	244	41	74	12.4121
UGUUAGCUUUGCUGUAAUUUAGACUGUCCUAAU	chr1:8075638-8075879(-)$1	241	42	75	12.5770
uuauuuuuuaaCUGCAAGGGUAAUUGUAAAAUC	chr5:65454896-65455160(+)$1	264	57	90	14.6025
CCCUCGGGUUUGGUAUAUUUGCUCCUAGAGCAG	chr11:62565991-62566210(-)$1	219	75	108	11.9347
UCCCUUGGGGAUGCUGUGAGGUACUGCUGGUGG	chr19:1271418-1271663(+)$1	245	66	99	10.4365
GAGUGUAAGAAGUUUUCCAAGACUUUGGGACUU	chr5:134121002-134121291(+)$1	289	199	232	12.3544
CAGGAUAGGAGGUGCUGCCGGGCCUGCUGUCCU	chr9:140347534-140347780(-)$1	246	94	127	12.7247
GCUUGCUGUGCUUUUCACAGAAUGGACAGCAAA	chrX:20252795-20253086(-)$1	291	134	167	14.0664
GCAGGGCCUGGCGCCCUGAGGCUCACCCUGGCU	chr2:234198338-234198607(+)$1	269	112	145	14.1488
GCCCCCACCUCUUAGCCGACUGCAGAUGGGGGU	chr2:242609994-242610241(+)$1	247	81	114	14.9361
CCUGUAGUUUAGAAUUAUUAUUGACAACUAGAG	chr6:56330862-56331132(-)$1	270	82	115	14.1091
UGUCAAGGACGAAGAGGAGUUUUUCCAGACAAC	chr1:36773828-36774091(+)$1	263	194	227	13.1662
CGCUUUGUGGAGAACCGCUGGUGUCUGAAGCGG	chr8:144668911-144669185(-)$1	274	37	70	12.4580
CUGGCAGCCCAGGGGUCUCCACGCUUGGUUGCC	chr11:75153517-75153798(-)$1	281	72	105	12.5154
GGAGGGGGGCUCAGGGACACAUGGAGUGCCUCU	chr14:21679349-21679619(-)$1	270	89	122	11.8173
AAAGGGUGAGGUGGCAGUGCCUCUGACCUCUUG	chr16:448817-449117(+)$1	300	129	162	12.2143
GGGGACCCUGUGGAGGUGAUUGCCAGUGGCCCC	chr3:52326152-52326379(+)$1	227	153	186	11.4834
CCAUCCUUGCGGGUACCUGGCUAUGCGGGGGUG	chr20:30193698-30193955(+)$1	257	7	40	12.0311
UCUACUCUAGGUGGCCAUGGCUACCGGGCAGGU	chr1:1333958-1334198(-)$1	240	137	170	11.6339
CUGGGCCGGAGCAAGCAGCCUUAAUCCUGUGCC	chr12:57499278-57499524(-)$1	246	85	118	13.5409
UGCUGCCCCCCUGGCCAGUGCCUGGGGAUGCCA	chr17:1674957-1675268(+)$1	311	26	59	13.7747
cagagaaaggcugugugcauccgcugucuacuc	chr7:99947209-99947537(+)$1	328	162	195	11.7966
GUGUGCACAGUCUCCUUCUGGAAUACUUGAUCA	chr16:89857824-89858094(-)$1	270	44	77	13.1428
AGGCCACAUGGUUGGACCAAGCCAUCCAGUGCG	chr14:103574552-103574839(+)$1	287	187	220	11.9300
AAUACUUCCUAUUUGAGCCCAUGUGUGGAAGAU	chr6:167453581-167453843(+)$1	262	51	84	10.8906
UGAUGGAUGGGGAAAAGGAUCCCCGUAAUCUUC	chr10:99236601-99236862(-)$1	261	187	220	11.6797
GAUGCUGGAUGAGCUGGGAGCCUUCUGGGCAGG	chr8:19675641-19675881(+)$1	240	77	110	11.8098
UGGCCAUGUGCCUGUGUGCAAAUAUGUACAUGU	chr20:398018-398277(+)$1	259	51	84	11.0786

#DB
((((((((((((.((....))...)))).))).	chr5:179249804-179250048(+)$1	1	83	116	11.2403
((((.(((...((((....)))))))))).)))	chr3:49723273-49723534(-)$1	1	99	132	12.2270
.((((..(((..(((....)))..)))..))))	chr11:67074691-67074958(+)$1	1	196	229	12.8022
)))))))(((..(((.....)))..)))(((.(	chr6:3298332-3298660(-)$1	1	62	95	11.3953
(((...(((.(((((....))))).)))..)))	chr5:179047898-179048159(-)$1	1	180	213	10.7534
(((((...((((.((....))))))))))))).	chr14:21544770-21545033(+)$1	1	110	143	11.7306
(((.(.((((((((((...)))))))))).)))	chr16:31098901-31099183(-)$1	1	69	102	12.9185
((....((.((.(((....))).)).))...))	chr3:48669120-48669382(-)$1	1	174	207	12.0794
.(((((.((((((((....)))..))))).)))	chr3:48731576-48731827(-)$1	1	10	43	11.4997
..((((((((((......))))))))))...))	chr17:48445559-48445808(-)$1	1	75	108	12.0310
(((.(.(((((((((....)))...))))))).	chr1:22176886-22177134(-)$1	1	180	213	12.5913
.((.(((.(((.(((....))).))).))).))	chr16:3727502-3727813(-)$1	1	96	129	14.3592
(((.(((.(((((((....))))))).))).))	chr7:44091278-44091535(+)$1	1	102	135	12.6877
((((..(((.(.(......).).))).))))).	chr3:184098860-184099135(+)$1	1	17	50	11.1398
((((((((((((((......)).))))))))))	chr3:50085526-50085781(+)$1	1	206	239	12.3090
)))(((((((...(((...)))...))))))).	chr11:802781-803038(-)$1	1	37	70	12.1469
(.(((..(((..(((....))))))...))).)	chr3:48562984-48563259(-)$1	1	169	202	14.2965
.((((((.(((((((....))).))))....))	chr17:21215309-21215555(+)$1	1	50	83	12.8830
((((....(((.(.((....)).).)))...))	chr21:44515724-44516010(-)$1	1	196	229	11.6235
((..((((...((((....))))...)))).))	chr10:99517252-99517512(+)$1	1	149	182	11.1800
(((.(((((((((((.....)))))))))))))	chr11:722530-722777(+)$1	1	201	234	11.8788
((((((((.(((.(((...))).))).))))).	chr16:89805438-89805698(+)$1	1	215	248	12.3988
))(((((((.(((((....)))))....)))))	chr4:83345895-83346193(-)$1	1	246	279	11.5150
(.((((((.((((((....)))...))))))).	chr17:76200747-76201030(+)$1	1	158	191	12.6890
(((((...(((((((....)))))))...))))	chr19:19101827-19102071(-)$1	1	185	218	13.5753
(((((...(((((((....)))))))....)))	chr11:62609027-62609233(-)$1	1	129	162	12.4464
(((((..((((.(((....))).)))).)))))	chr14:39745983-39746279(+)$1	1	145	178	12.9414
(((((.(((((.(((....))).))))).))))	chr2:174228603-174228853(+)$1	1	101	134	13.6490
(.(((..((((.(((....))).))))))).))	chr9:74313008-74313266(-)$1	1	8	41	14.0907
))(((((...(((((....))).))....))))	chr7:150774225-150774469(-)$1	1	41	74	12.4121
((((((....((((.....))).)....)))))	chr1:8075638-8075879(-)$1	1	42	75	12.5770
(.(((((.(((.(((....))).))).))))).	chr5:65454896-65455160(+)$1	1	57	90	14.6025
..((((((...((((....))))))).))))))	chr11:62565991-62566210(-)$1	1	75	108	11.9347
((((.(.((.(((((....)))).).)).).))	chr19:1271418-1271663(+)$1	1	66	99	10.4365
((((.(..(((((((....))))))).).))))	chr5:134121002-134121291(+)$1	1	199	232	12.3544
((((((((.((((.(....).)))).)))))))	chr9:140347534-140347780(-)$1	1	94	127	12.7247
..(((((((.(.(((....))).).))))))).	chrX:20252795-20253086(-)$1	1	134	167	14.0664
.(((((..(((.(((....))))))))))).))	chr2:234198338-234198607(+)$1	1	112	145	14.1488
(((((((..((((((....))).))))))))))	chr2:242609994-242610241(+)$1	1	81	114	14.9361
(((.(((((...(((....)))...))))).))	chr6:56330862-56331132(-)$1	1	82	115	14.1091
((((..(((.(((......))).))).))).))	chr1:36773828-36774091(+)$1	1	194	227	13.1662
((((((..(((..(((...))).))))))))((	chr8:144668911-144669185(-)$1	1	37	70	12.4580
(((((((((.(((.((....)).))))))))))	chr11:75153517-75153798(-)$1	1	72	105	12.5154
(.(((((.((((..(....)...)))).)))))	chr14:21679349-21679619(-)$1	1	89	122	11.8173
.((((((.(((.(((...)))))).))).)))(	chr16:448817-449117(+)$1	1	129	162	12.2143
(((..(((((.(.((....)).)))).))))))	chr3:52326152-52326379(+)$1	1	153	186	11.4834
.(((((((((((((.....))).))))))))))	chr20:30193698-30193955(+)$1	1	7	40	12.0311
(((.(((..((((((....))))))))).))).	chr1:1333958-1334198(-)$1	1	137	170	11.6339
(.((((((((..(((....)))..))).).)))	chr12:57499278-57499524(-)$1	1	85	118	13.5409
((((((.((((.(((....))).))))..).))	chr17:1674957-1675268(+)$1	1	26	59	13.7747
..(((..((((.(((......))).)))).)))	chr7:99947209-99947537(+)$1	1	162	195	11.7966
(((..((.(((.(((....)))..)))))..))	chr16:89857824-89858094(-)$1	1	44	77	13.1428
.((((((.(((.(((......))).)))....)	chr14:103574552-103574839(+)$1	1	187	220	11.9300
(((.((((((((.((....)).))).)))))))	chr6:167453581-167453843(+)$1	1	51	84	10.8906
.(((..(((((((......))))))).))).))	chr10:99236601-99236862(-)$1	1	187	220	11.6797
)).)))(((.(.(((...)))).)))(((((..	chr8:19675641-19675881(+)$1	1	77	110	11.8098
(((((((((((.(((......))).))))))).	chr20:398018-398277(+)$1	1	51	84	11.0786

#PSSM
c : 0.14	g : 0.14	d : 0.14	e : 0.10	: : 0.07	= : 0.07	b : 0.07	" : 0.07	f : 0.05	! : 0.05	[ : 0.03	F : 0.01	a : 0.01	D : 0.01	
c : 0.21	d : 0.14	g : 0.14	e : 0.10	[ : 0.10	f : 0.08	= : 0.08	b : 0.05	! : 0.03	" : 0.03	
c : 0.26	e : 0.15	d : 0.15	g : 0.15	= : 0.10	f : 0.07	b : 0.03	# : 0.01	! : 0.01	] : 0.01	
c : 0.17	e : 0.15	g : 0.15	[ : 0.14	= : 0.10	d : 0.08	f : 0.07	! : 0.05	" : 0.01	# : 0.01	b : 0.01	
e : 0.17	g : 0.17	c : 0.15	= : 0.12	! : 0.08	d : 0.07	f : 0.07	[ : 0.05	a : 0.03	# : 0.03	" : 0.01	
e : 0.15	c : 0.14	! : 0.14	= : 0.12	g : 0.10	" : 0.07	[ : 0.05	d : 0.05	a : 0.05	# : 0.03	f : 0.03	b : 0.03	
c : 0.19	! : 0.14	g : 0.12	= : 0.12	e : 0.12	" : 0.05	b : 0.05	[ : 0.05	f : 0.05	# : 0.03	d : 0.03	a : 0.01	
c : 0.21	[ : 0.14	= : 0.12	d : 0.10	e : 0.08	g : 0.08	! : 0.08	" : 0.07	b : 0.03	# : 0.03	f : 0.01	
c : 0.29	g : 0.15	d : 0.14	= : 0.10	" : 0.07	[ : 0.07	e : 0.07	! : 0.03	f : 0.01	# : 0.01	b : 0.01	
c : 0.29	d : 0.15	[ : 0.14	g : 0.12	" : 0.08	= : 0.08	e : 0.03	f : 0.03	b : 0.01	# : 0.01	
c : 0.24	d : 0.15	g : 0.10	" : 0.08	= : 0.08	a : 0.08	! : 0.07	e : 0.07	b : 0.03	f : 0.03	[ : 0.01	
[ : 0.29	d : 0.15	c : 0.14	! : 0.08	g : 0.08	= : 0.07	e : 0.05	f : 0.03	" : 0.03	b : 0.01	a : 0.01	
c : 0.52	[ : 0.08	d : 0.08	g : 0.08	e : 0.03	= : 0.03	a : 0.03	! : 0.03	o : 0.01	b : 0.01	" : 0.01	f : 0.01	
c : 0.54	b : 0.08	d : 0.07	o : 0.07	g : 0.07	[ : 0.05	e : 0.03	= : 0.03	! : 0.01	f : 0.01	
c : 0.50	b : 0.10	o : 0.08	d : 0.07	g : 0.07	e : 0.03	= : 0.03	n : 0.03	a : 0.03	f : 0.01	
m : 0.64	o : 0.14	n : 0.07	c : 0.05	b : 0.03	l : 0.03	= : 0.01	
m : 0.68	o : 0.14	l : 0.10	n : 0.07	
m : 0.68	o : 0.14	l : 0.10	n : 0.07	
m : 0.68	o : 0.12	n : 0.07	l : 0.07	c : 0.03	= : 0.01	
c : 0.49	g : 0.08	b : 0.07	d : 0.07	o : 0.07	a : 0.05	n : 0.03	e : 0.03	= : 0.03	m : 0.03	f : 0.01	
c : 0.50	b : 0.12	g : 0.08	d : 0.07	= : 0.05	o : 0.05	e : 0.03	] : 0.03	3 : 0.01	f : 0.01	
c : 0.54	d : 0.10	g : 0.08	= : 0.05	b : 0.05	3 : 0.03	e : 0.03	a : 0.03	] : 0.03	f : 0.01	
] : 0.36	c : 0.14	3 : 0.10	d : 0.10	g : 0.08	2 : 0.07	= : 0.05	e : 0.03	a : 0.01	f : 0.01	
c : 0.33	d : 0.12	3 : 0.10	2 : 0.08	= : 0.08	g : 0.08	e : 0.05	a : 0.05	b : 0.03	] : 0.01	f : 0.01	
c : 0.31	d : 0.14	] : 0.12	= : 0.08	3 : 0.08	g : 0.08	b : 0.03	e : 0.03	4 : 0.03	2 : 0.01	a : 0.01	f : 0.01	
c : 0.38	g : 0.15	d : 0.12	= : 0.08	] : 0.07	e : 0.07	4 : 0.05	3 : 0.03	f : 0.01	
c : 0.19	] : 0.17	d : 0.14	= : 0.12	e : 0.12	g : 0.08	4 : 0.07	b : 0.03	3 : 0.03	f : 0.01	
c : 0.24	e : 0.17	= : 0.12	g : 0.08	4 : 0.08	b : 0.07	d : 0.05	] : 0.05	2 : 0.03	3 : 0.03	f : 0.01	a : 0.01	
e : 0.17	c : 0.15	= : 0.12	] : 0.10	g : 0.10	3 : 0.07	4 : 0.07	2 : 0.05	d : 0.05	f : 0.03	b : 0.03	a : 0.01	
c : 0.19	e : 0.17	g : 0.15	= : 0.10	] : 0.08	d : 0.07	3 : 0.05	4 : 0.05	2 : 0.03	f : 0.03	a : 0.03	
] : 0.17	g : 0.15	e : 0.15	c : 0.12	= : 0.10	d : 0.08	f : 0.07	3 : 0.05	4 : 0.03	a : 0.01	2 : 0.01	
g : 0.19	e : 0.19	c : 0.17	d : 0.15	f : 0.08	= : 0.08	[ : 0.01	a : 0.01	b : 0.01	] : 0.01	4 : 0.01	! : 0.01	
c : 0.14	d : 0.14	e : 0.14	g : 0.14	] : 0.10	f : 0.10	= : 0.08	b : 0.03	: : 0.03	4 : 0.01	5 : 0.01	! : 0.01	6 : 0.01	

#score	710.3471754093035
#seq	57
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_CDS_m1_run2.txt

#BEAR
[ffffff[bb$$$$$bboooooobb4444bbffffff333	chrX:153693691-153693952(+)$1	261	127	167	14.6906
====[dddd$$$$$ddddmmmmdddd22dddd]=======	chr17:25636003-25636263(+)$1	260	190	230	13.6302
eee"""ggggggg[cccooooooccc]ggggggg22eeee	chr6:31729148-31729403(+)$1	255	112	152	17.2145
""aggggggg[ddddddddllldddd333dddd]gggggg	chr17:26910860-26911103(-)$1	243	161	201	13.6477
c[ccc[cccaccc!!cccnnnnnccc333ccc22a]ccc]	chrX:151130886-151131140(-)$1	254	131	171	17.0318
cc"""ccc[ccc!!cccmmmmccc]ccccccccc333ccc	chr7:148515005-148515259(-)$1	254	173	213	14.0394
gggggggg[a[bb[cccooooooccc]bba]ggggggg55	chr17:7399983-7400247(+)$1	264	34	74	15.3798
!!a!!ffffffbb[cccooooooccc333bb22ffffff2	chr17:46050790-46051047(+)$1	257	107	147	17.0442
[===========!!bbcccmmmmccc]bb===========	chr12:133313406-133313746(-)$1	340	50	90	15.6421
d"""bb[a[ccc!!cccnnnnncccccc]abb4444dddd	chr22:20048956-20049300(+)$1	344	96	136	14.4835
ffffff[bb####ddddoooooodddd4444bbffffffD	chr16:2284781-2285039(+)$1	258	201	241	13.7903
d!!ccc!!eeeeeddddoooooodddd]eeeeeccc22dd	chr1:113161513-113161838(-)$1	325	108	148	13.9425
#bb[ccc[ccc"""ddddnnnnndddd]ccc]ccc]bb22	chr22:50879211-50879529(+)$1	318	137	177	14.0708
ffff[a[ggggggg!!cccmmmmccc333ggggggg22a]	chr12:133374883-133375167(-)$1	284	219	259	14.9990
iiii"""ccc####ddddmmmmdddd333ccciiiiiiii	chr7:72925008-72925256(-)$1	248	36	76	16.4102
cc]ggggggga!!ddddoooooodddd22a:gggggggbb	chr7:158552044-158552318(-)$1	274	121	161	15.6311
:ccc[iiiiiiiiicccnnnnnccc4444iiiiiiiii]c	chr6:44273289-44273573(-)$1	284	220	260	15.9381
eccc!!ggggggg[cccnnnnncccggggggg22ccc>>>	chr9:128001592-128001822(-)$1	230	142	182	14.6317
ddd!!ffffff!!ddddoooooodddd22ffffff22ddd	chr10:72500657-72500972(+)$1	315	13	53	14.7027
i"""a[bb[a####cccooooooccc22a]bb]a333iii	chr6:35285990-35286278(+)$1	288	179	219	19.6843
=========[eeeee[a[ammmma]a22eeeee22=====	chr3:142740212-142740496(+)$1	284	208	248	13.1066
fff$$$$$ccc!!ddddnnnnndddd22ccc]ffffff22	chr5:10397303-10397529(+)$1	226	86	126	13.9201
fffccc[ccc[ddddcccnnnnnccc22dddd]ccc22cc	chr18:683209-683464(-)$1	255	91	131	14.4371
:ffffff[dddd!!cccooooooccc22dddd]ffffff:	chr14:21461199-21461472(+)$1	273	32	72	15.0090
###dddd[==========nnnnn==========4444ddd	chr12:132446302-132446605(+)$1	303	249	289	14.2979
eee[a!!ggggggg[bboooooobbggggggg]aeeeee]	chr9:134386630-134386941(+)$1	311	108	148	14.8317
ffff[bb[eeeee"""aooooooa333eeeee]bbfffff	chr11:126145861-126146238(+)$1	377	81	121	13.7086
==========####cccooooooccc333===========	chr9:131456083-131456335(+)$1	252	79	119	22.0398
::::ggggggg"""cccooooooccc22ggggggg=====	chr22:29692177-29692458(+)$1	281	4	44	16.0743
!!bb"""ccc"""ddddlllddddccc333bbggggggg:	chrX:152936873-152937142(-)$1	269	94	134	13.9587
ffff[ccc==========nnnnn==========4444ccc	chr12:133365588-133365904(-)$1	316	201	241	15.1801
e!!eeeeedddd!!cccooooooccc22dddd]eeeeeee	chr2:96964306-96964541(-)$1	235	101	141	15.8375
d[a####ggggggg[bboooooobb]ggggggga]dddd3	chr11:6532406-6532706(+)$1	300	33	73	15.2008
[==========[bb!!cccmmmmccc22bb]=========	chr19:1011811-1012089(-)$1	278	217	257	15.4086
:ccciiiiiiiii[cccooooooccciiiiiiiii22ccc	chr5:126250572-126250910(-)$1	338	226	266	17.2171
cc[bb[dddd[ccccccooooooccc22cccdddd]bb]c	chr16:89598328-89598577(+)$1	249	76	116	15.9007
ccc[a[a!!bb"""cccooooooccc333bb22aa]ccc5	chr17:46128817-46129089(+)$1	272	67	107	18.8950
fffff"""ccc"""cccooooooccc22ccc]ffffffhh	chr14:23530211-23530492(-)$1	281	219	259	18.2394
====!!bb$$$$$ddddoooooodddd333bb22======	chr13:31035369-31035657(-)$1	288	145	185	17.1399
c[ccc"""a[ccc[ccclllcccccc]a333ccc]ccc22	chr3:47036714-47036995(+)$1	281	109	149	14.7833
cc[==========[ccclllccc]==========ccc444	chr4:68566649-68566956(-)$1	307	145	185	15.2919
bb[dddddddd"""cccooooooccc]dddd22dddd]bb	chr4:995122-995422(+)$1	300	19	59	14.3198
D:==========!!cccooooooccc333==========:	chr16:1779040-1779304(+)$1	264	19	59	19.0426
ff[a"""dddd####cccnnnnnccc333dddd>>>>>>>	chr10:120809223-120809488(-)$1	265	96	136	15.5183
[==========!!ddddoooooodddd]==========]b	chr15:75650926-75651199(-)$1	273	96	136	18.8959
"""hhhhhhhh####cccnnnnnccc333hhhhhhhh]ff	chr1:150525271-150525545(+)$1	274	96	136	14.3843
dddd[ccc[ccc!!bboooooobb]ccc]ccc333dddd3	chr2:128051052-128051351(-)$1	299	171	211	14.2594
ddd!!===========cccmmmmccc]===========33	chr5:145529094-145529362(-)$1	268	212	252	15.9676
ee[bb[bb[bb!!acccooooooccc]a22bb]bb]bb]e	chr19:5593773-5594113(-)$1	340	140	180	15.7215
f[ccc"""ggggggg[aooooooa]ggggggg333ccc]f	chr8:124408485-124408771(-)$1	286	54	94	16.5270
ffff[iiiiiiiii[cccnnnnnccc333iiiiiiiiiff	chr21:40720247-40720466(-)$1	219	63	103	17.3258
[dddd"""ccc!!ddddoooooodddd22ccc22dddddd	chr9:140469107-140469391(-)$1	284	61	101	16.0002

#otherMatches

#Seq PSSM
UCUGGGAUGGAGACUUCCCCAUAGACAAGCCUCCCAGCUU	chrX:153693691-153693952(+)$1	261	127	167	14.6906
AGCUUGUGACUUUUCUCCUGAUGGAGCAUUACUGGCUACU	chr17:25636003-25636263(+)$1	260	190	230	13.6302
GCGCUUCUGGCCGCUGUGCUCCGACACUGGCUGGCACGUG	chr6:31729148-31729403(+)$1	255	112	152	17.2145
AACCACACUGGAAGUGCUCCGGGAGCGCAGCUUGCAGUGU	chr17:26910860-26911103(-)$1	243	161	201	13.6477
UAUGGAUCCCGGACACCUUUUUUAGGAAUUCUAAGAGGAC	chrX:151130886-151131140(-)$1	254	131	171	17.0318
AUUAAUGUGCUGGAAUCAAAGGAUACAGACAGUGAUAGGG	chr7:148515005-148515259(-)$1	254	173	213	14.0394
UGGCCUGGUGUGGAGGGAAAUGGCCCACCCUCUGGGCUCU	chr17:7399983-7400247(+)$1	264	34	74	15.3798
CAGAAGGCACUGCAGCCUGAAAUGGCAGAGUCUGGUGCUG	chr17:46050790-46051047(+)$1	257	107	147	17.0442
CGGAGGGGGCGGAAGCCUGCAGCCAGUGCCUGUCUCCUCC	chr12:133313406-133313746(-)$1	340	50	90	15.6421
GCACCUACGGGCUGAGCAACGCGCUGCUGGAGACUCCCUG	chr22:20048956-20049300(+)$1	344	96	136	14.4835
CCCAGGAGUAUAUCAUCGAGGUGGGUGUGGGGCCCUGGGG	chr16:2284781-2285039(+)$1	258	201	241	13.7903
GGACCGUGGCGGCGUGGGUGAAGCCGCAGCUGUUGGAGCG	chr1:113161513-113161838(-)$1	325	108	148	13.9425
GAUGGCGACCAGAAGGCAGCGAGUGCCAUGGAUGCGGUGA	chr22:50879211-50879529(+)$1	318	137	177	14.0708
CGGCACAGCUGCAGGGCAUUGAGGUGAGGCUGCGGCCGGG	chr12:133374883-133375167(-)$1	284	219	259	14.9990
GUUGCUUGCAUAUUGUUUUCCUGAACUACUGCCAACAGAG	chr7:72925008-72925256(-)$1	248	36	76	16.4102
GAUUCAGCAAGGAACCUUCCGGUAGGUAACACAGUGGUAA	chr7:158552044-158552318(-)$1	274	121	161	15.6311
GACACCUCUUCCCCAGCCCUGAGCUCCUGGGGGAGGAGCU	chr6:44273289-44273573(-)$1	284	220	260	15.9381
AUACGGCAUAUUUGCCAAAUAGUGGAAAUGUGAAGUACUG	chr9:128001592-128001822(-)$1	230	142	182	14.6317
CUGUGUGGGAAACCUGGCCCUCCCCAGCCUUCCCAGCCAG	chr10:72500657-72500972(+)$1	315	13	53	14.7027
ggaggaggaggaacggcGCCGCAGCCAGCACCGCGAGCUG	chr6:35285990-35286278(+)$1	288	179	219	19.6843
UGAUUGAUAUGCUUUAUGCUUUUGGAAGAAAGCUUUGUUA	chr3:142740212-142740496(+)$1	284	208	248	13.1066
GCUUUUUUCCUUUAGGAACAUGUCUUCUGGGUGGUAUCUU	chr5:10397303-10397529(+)$1	226	86	126	13.9201
AUGCCAACCAGCGCUGGGAUGUGCCUGAGGCGGUGGAGUG	chr18:683209-683464(-)$1	255	91	131	14.4371
UAAGUAUCUAAUUACCCUACUGUGGGAUGUUGUAUAUUUC	chr14:21461199-21461472(+)$1	273	32	72	15.0090
CUAUGCGACAAUGAAUUAAGUAAUAAUUUAUUGAGCCUGC	chr12:132446302-132446605(+)$1	303	249	289	14.2979
AUCACUCAGGGUCAGCCACUGGAGGUGGCCUUUGGGUCCC	chr9:134386630-134386941(+)$1	311	108	148	14.8317
GGUGUCUGCAGGUGAAGAUGGACCGCAGCCUGGAGUACCA	chr11:126145861-126146238(+)$1	377	81	121	13.7086
UUUUUUUUUAAGGUUCCCGAUAUGGAUGAUgaagaaggag	chr9:131456083-131456335(+)$1	252	79	119	22.0398
AAAUUAGUAUAUUCUAGUCAUGCCUAACUAUGCUAUUCUU	chr22:29692177-29692458(+)$1	281	4	44	16.0743
CUGGGAACAUGCUAGGCACCGCCUGUGGGACCCCUGGAUA	chrX:152936873-152937142(-)$1	269	94	134	13.9587
GGUGGCCCAGGUCCGUCAGCACAUGGCGGACCUUGAAGGG	chr12:133365588-133365904(-)$1	316	201	241	15.1801
ACGGCCAGUGAUGAUCGGGAAUGUGAAAAUCAGCUGGUUC	chr2:96964306-96964541(-)$1	235	101	141	15.8375
GGUCAAAGGUAUCCAAGGAAGGAUUGGGAUGCCAGCUCUG	chr11:6532406-6532706(+)$1	300	33	73	15.2008
GUGCGGGGGCUGGCCGGGCGGGAGCCAAGCAGGCCCUCGC	chr19:1011811-1012089(-)$1	278	217	257	15.4086
AGCUACUGUGAACUCUGCCACUUCAGGUUUGCAGUCGAGC	chr5:126250572-126250910(-)$1	338	226	266	17.2171
GCGGUGGCCACGGAGGCUCAGGUGCCCUUCCUGGCGAUGG	chr16:89598328-89598577(+)$1	249	76	116	15.9007
CCCAGACAACGGGGUGCGAGAAAGCGAAACGGAGCAGGGA	chr17:46128817-46129089(+)$1	272	67	107	18.8950
CCCUGCUCCCUAGUGGCACUGAGGCUUGAGGUCAGGGUGA	chr14:23530211-23530492(-)$1	281	219	259	18.2394
agaugaUGAUGAUGAAUAAGUUGGUUCUAGCGCAGUUUUU	chr13:31035369-31035657(-)$1	288	145	185	17.1399
GCGUCACCUGCUGCGCCCCCGGCCAGGAUUGGACUCGGAA	chr3:47036714-47036995(+)$1	281	109	149	14.7833
CCAUCAGGGGGAAGAGGCGUCCUGUUCUUCCUGGGGGACU	chr4:68566649-68566956(-)$1	307	145	185	15.2919
GGAGAUGGGGUUCAUCUUGAGUCAGACGCCCUUCAUCACC	chr4:995122-995422(+)$1	300	19	59	14.3198
CCCUCUGUGGUUACAACCCAAGAGUUCAGGGCCAUGGAGA	chr16:1779040-1779304(+)$1	264	19	59	19.0426
AAAGGGAGUUGGAAAUUGAAGAACGAGAACGGCGUAGAGA	chr10:120809223-120809488(-)$1	265	96	136	15.5183
GAUGAUGUCCCCUUGUACUGGGAUGCAUGGGACGUCAUGG	chr15:75650926-75651199(-)$1	273	96	136	18.8959
AUAUAGGUGUUGUCCGGACACUCUCUUCAGACACCUACAG	chr1:150525271-150525545(+)$1	274	96	136	14.3843
AGUCAGGCACCAAAGUGGAUGAAUAUGGAGCCAAGGACUA	chr2:128051052-128051351(-)$1	299	171	211	14.2594
GAAGAGCUGUUAAUAGACUUGACAGUGUUAUUAGCAGUGA	chr5:145529094-145529362(-)$1	268	212	252	15.9676
GCGGCGCCAGCAGGAGCAGCUGCGUUACGAGCAGGAGCGG	chr19:5593773-5594113(-)$1	340	140	180	15.7215
UGCGGCCGCUGGCGCGGAGCUUGUGGCGCCAGAAUUCGGA	chr8:124408485-124408771(-)$1	286	54	94	16.5270
CUGACUCUCCUUUUUCUUUCUCCAAGCCCAAGAGGAGAUC	chr21:40720247-40720466(-)$1	219	63	103	17.3258
ACUUCCCUUUGAUGGAGUUUCUUCUUCUCCAGUAGAAGAG	chr9:140469107-140469391(-)$1	284	61	101	16.0002

#DB
.((((((.((.....((......))....))))))))...	chrX:153693691-153693952(+)$1	1	127	167	14.6906
((((.((((.....((((....))))..)))).)))))))	chr17:25636003-25636263(+)$1	1	190	230	13.6302
(((...(((((((.(((......))).)))))))..))))	chr6:31729148-31729403(+)$1	1	112	152	17.2145
..((((((((.((((((((...))))...)))).))))))	chr17:26910860-26911103(-)$1	1	161	201	13.6477
(.(((.(((((((..(((.....)))...)))..).))).	chrX:151130886-151131140(-)$1	1	131	171	17.0318
((...(((.(((..(((....))).)))))))))...)))	chr7:148515005-148515259(-)$1	1	173	213	14.0394
((((((((.(.((.(((......))).))).)))))))..	chr17:7399983-7400247(+)$1	1	34	74	15.3798
..(..((((((((.(((......)))...))..)))))).	chr17:46050790-46051047(+)$1	1	107	147	17.0442
.(((((((((((..(((((....))).)))))))))))))	chr12:133313406-133313746(-)$1	1	50	90	15.6421
(...((.(.(((..(((.....)))))).)))....))))	chr22:20048956-20049300(+)$1	1	96	136	14.4835
((((((.((....((((......))))....)))))))))	chr16:2284781-2285039(+)$1	1	201	241	13.7903
(..(((..(((((((((......)))).))))))))..))	chr1:113161513-113161838(-)$1	1	108	148	13.9425
.((.(((.(((...((((.....)))).))).))).))..	chr22:50879211-50879529(+)$1	1	137	177	14.0708
((((.(.(((((((..(((....)))...)))))))..).	chr12:133374883-133375167(-)$1	1	219	259	14.9990
((((...(((....((((....))))...)))))))))))	chr7:72925008-72925256(-)$1	1	36	76	16.4102
)).)))))))(..((((......))))..).(((((((((	chr7:158552044-158552318(-)$1	1	121	161	15.6311
.(((.((((((((((((.....)))....))))))))).)	chr6:44273289-44273573(-)$1	1	220	260	15.9381
((((..(((((((.(((.....))))))))))..)))...	chr9:128001592-128001822(-)$1	1	142	182	14.6317
(((..((((((..((((......))))..))))))..)))	chr10:72500657-72500972(+)$1	1	13	53	14.7027
(...(.((.(....(((......)))..).)).)...)))	chr6:35285990-35286278(+)$1	1	179	219	19.6843
(((((((((.(((((.(.(....).)..)))))..)))))	chr3:142740212-142740496(+)$1	1	208	248	13.1066
(((.....(((..((((.....))))..))).))))))..	chr5:10397303-10397529(+)$1	1	86	126	13.9201
((((((.(((.(((((((.....)))..)))).)))..))	chr18:683209-683464(-)$1	1	91	131	14.4371
.((((((.((((..(((......)))..)))).)))))).	chr14:21461199-21461472(+)$1	1	32	72	15.0090
...((((.((((((((((.....))))))))))....)))	chr12:132446302-132446605(+)$1	1	249	289	14.2979
(((.(..(((((((.((......))))))))).)))))).	chr9:134386630-134386941(+)$1	1	108	148	14.8317
((((.((.(((((...(......)...))))).)))))))	chr11:126145861-126146238(+)$1	1	81	121	13.7086
((((((((((....(((......)))...)))))))))))	chr9:131456083-131456335(+)$1	1	79	119	22.0398
....(((((((...(((......)))..)))))))(((((	chr22:29692177-29692458(+)$1	1	4	44	16.0743
..((...(((...((((...)))))))...))))))))).	chrX:152936873-152937142(-)$1	1	94	134	13.9587
((((.(((((((((((((.....))))))))))....)))	chr12:133365588-133365904(-)$1	1	201	241	15.1801
(..(((((((((..(((......)))..)))).)))))))	chr2:96964306-96964541(-)$1	1	101	141	15.8375
(.(....(((((((.((......)).)))))))).)))).	chr11:6532406-6532706(+)$1	1	33	73	15.2008
.((((((((((.((..(((....)))..)).)))))))))	chr19:1011811-1012089(-)$1	1	217	257	15.4086
.((((((((((((.(((......))))))))))))..)))	chr5:126250572-126250910(-)$1	1	226	266	17.2171
((.((.((((.((((((......)))..))))))).)).)	chr16:89598328-89598577(+)$1	1	76	116	15.9007
(((.(.(..((...(((......)))...))..)).))).	chr17:46128817-46129089(+)$1	1	67	107	18.8950
(((((...(((...(((......)))..))).))))))))	chr14:23530211-23530492(-)$1	1	219	259	18.2394
((((..((.....((((......))))...))..))))))	chr13:31035369-31035657(-)$1	1	145	185	17.1399
(.(((...(.(((.(((...)))))).)...))).)))..	chr3:47036714-47036995(+)$1	1	109	149	14.7833
((.((((((((((.(((...))).)))))))))))))...	chr4:68566649-68566956(-)$1	1	145	185	15.2919
((.((((((((...(((......))).))))..)))).))	chr4:995122-995422(+)$1	1	19	59	14.3198
(.((((((((((..(((......)))...)))))))))).	chr16:1779040-1779304(+)$1	1	19	59	19.0426
((.(...((((....(((.....)))...)))).......	chr10:120809223-120809488(-)$1	1	96	136	15.5183
.((((((((((..((((......)))).)))))))))).)	chr15:75650926-75651199(-)$1	1	96	136	18.8959
...((((((((....(((.....)))...)))))))).))	chr1:150525271-150525545(+)$1	1	96	136	14.3843
((((.(((.(((..((......)).))).)))...)))).	chr2:128051052-128051351(-)$1	1	171	211	14.2594
(((..((((((((((((((....))).)))))))))))..	chr5:145529094-145529362(-)$1	1	212	252	15.9676
((.((.((.((..((((......))).)..)).)).)).)	chr19:5593773-5594113(-)$1	1	140	180	15.7215
(.(((...(((((((.(......).)))))))...))).)	chr8:124408485-124408771(-)$1	1	54	94	16.5270
((((.(((((((((.(((.....)))...)))))))))))	chr21:40720247-40720466(-)$1	1	63	103	17.3258
.((((...(((..((((......))))..)))..))))))	chr9:140469107-140469391(-)$1	1	61	101	16.0002

#PSSM
f : 0.19	c : 0.13	d : 0.11	[ : 0.09	e : 0.09	= : 0.07	: : 0.07	" : 0.03	! : 0.03	# : 0.03	i : 0.03	g : 0.01	b : 0.01	D : 0.01	
f : 0.21	c : 0.15	= : 0.13	" : 0.07	[ : 0.07	! : 0.07	d : 0.07	e : 0.05	b : 0.03	: : 0.03	g : 0.01	i : 0.01	# : 0.01	
f : 0.19	= : 0.15	c : 0.13	[ : 0.09	" : 0.07	d : 0.07	a : 0.05	e : 0.03	! : 0.03	b : 0.03	g : 0.01	i : 0.01	] : 0.01	# : 0.01	: : 0.01	
= : 0.17	f : 0.15	c : 0.15	" : 0.07	d : 0.07	g : 0.05	! : 0.05	[ : 0.05	b : 0.05	i : 0.01	$ : 0.01	: : 0.01	e : 0.01	# : 0.01	a : 0.01	h : 0.01	
[ : 0.13	= : 0.13	c : 0.11	" : 0.09	! : 0.09	f : 0.07	g : 0.07	b : 0.05	a : 0.05	d : 0.05	$ : 0.01	e : 0.01	# : 0.01	i : 0.01	h : 0.01	
" : 0.15	= : 0.15	c : 0.11	f : 0.09	[ : 0.09	g : 0.07	d : 0.05	i : 0.05	! : 0.05	b : 0.03	a : 0.01	$ : 0.01	e : 0.01	# : 0.01	h : 0.01	
= : 0.15	" : 0.13	g : 0.11	c : 0.09	f : 0.07	d : 0.07	[ : 0.07	b : 0.07	i : 0.05	! : 0.03	$ : 0.01	e : 0.01	# : 0.01	a : 0.01	h : 0.01	
g : 0.17	= : 0.15	c : 0.13	[ : 0.09	d : 0.07	b : 0.07	" : 0.07	i : 0.05	f : 0.03	! : 0.03	a : 0.01	$ : 0.01	e : 0.01	h : 0.01	
= : 0.19	g : 0.17	c : 0.15	d : 0.11	[ : 0.11	i : 0.05	b : 0.03	f : 0.03	e : 0.03	! : 0.01	$ : 0.01	a : 0.01	h : 0.01	
c : 0.19	g : 0.17	= : 0.17	d : 0.09	b : 0.05	a : 0.05	i : 0.05	$ : 0.03	f : 0.03	e : 0.03	[ : 0.03	# : 0.01	h : 0.01	
c : 0.17	= : 0.15	g : 0.13	[ : 0.07	# : 0.07	d : 0.07	$ : 0.05	e : 0.05	i : 0.05	f : 0.03	b : 0.03	a : 0.01	" : 0.01	h : 0.01	
g : 0.11	c : 0.11	= : 0.11	# : 0.11	" : 0.11	! : 0.11	d : 0.07	$ : 0.05	e : 0.05	i : 0.05	b : 0.03	[ : 0.01	
! : 0.24	g : 0.11	# : 0.11	" : 0.11	= : 0.07	$ : 0.05	c : 0.05	b : 0.05	e : 0.05	i : 0.05	d : 0.03	
d : 0.21	! : 0.15	[ : 0.13	" : 0.11	# : 0.09	g : 0.07	= : 0.05	$ : 0.03	i : 0.03	e : 0.01	b : 0.01	c : 0.01	a : 0.01	
c : 0.40	d : 0.26	! : 0.05	= : 0.05	[ : 0.05	b : 0.03	# : 0.03	$ : 0.01	e : 0.01	" : 0.01	g : 0.01	
c : 0.49	d : 0.24	b : 0.09	= : 0.05	! : 0.03	[ : 0.03	" : 0.01	
c : 0.57	d : 0.24	b : 0.05	a : 0.05	= : 0.03	o : 0.01	
o : 0.53	c : 0.17	d : 0.07	n : 0.07	l : 0.05	= : 0.03	m : 0.01	[ : 0.01	
o : 0.53	n : 0.23	c : 0.07	m : 0.05	l : 0.05	d : 0.01	a : 0.01	
o : 0.53	n : 0.23	m : 0.15	l : 0.07	
o : 0.53	n : 0.23	m : 0.15	c : 0.03	l : 0.01	d : 0.01	
o : 0.53	n : 0.23	m : 0.13	c : 0.05	l : 0.01	d : 0.01	
o : 0.51	n : 0.15	c : 0.11	d : 0.09	m : 0.09	b : 0.01	
c : 0.55	d : 0.24	b : 0.07	a : 0.05	= : 0.03	] : 0.01	
c : 0.55	d : 0.23	] : 0.07	b : 0.05	= : 0.05	3 : 0.01	
c : 0.55	d : 0.23	g : 0.05	= : 0.05	4 : 0.03	a : 0.01	3 : 0.01	] : 0.01	
3 : 0.23	2 : 0.21	d : 0.15	] : 0.13	c : 0.07	g : 0.07	= : 0.05	4 : 0.03	i : 0.01	
2 : 0.26	3 : 0.24	g : 0.09	= : 0.07	4 : 0.05	c : 0.05	] : 0.05	b : 0.03	a : 0.03	e : 0.01	i : 0.01	d : 0.01	
3 : 0.26	g : 0.11	d : 0.09	c : 0.09	= : 0.09	2 : 0.07	4 : 0.05	b : 0.05	e : 0.05	] : 0.03	a : 0.01	i : 0.01	
c : 0.17	= : 0.15	d : 0.13	g : 0.13	b : 0.07	a : 0.05	e : 0.05	i : 0.05	3 : 0.05	4 : 0.01	f : 0.01	] : 0.01	h : 0.01	2 : 0.01	
c : 0.17	b : 0.15	= : 0.15	d : 0.13	g : 0.13	e : 0.05	i : 0.05	] : 0.03	4 : 0.01	: : 0.01	f : 0.01	3 : 0.01	h : 0.01	
g : 0.17	= : 0.17	d : 0.13	c : 0.11	b : 0.11	2 : 0.05	e : 0.05	] : 0.05	i : 0.05	f : 0.03	h : 0.01	
= : 0.17	] : 0.15	g : 0.13	2 : 0.13	f : 0.07	i : 0.07	d : 0.05	c : 0.05	e : 0.03	3 : 0.03	4 : 0.01	b : 0.01	h : 0.01	
= : 0.15	f : 0.13	g : 0.11	2 : 0.09	c : 0.09	i : 0.07	a : 0.07	4 : 0.05	b : 0.03	d : 0.03	3 : 0.03	] : 0.01	e : 0.01	> : 0.01	h : 0.01	
= : 0.15	f : 0.13	g : 0.11	c : 0.09	3 : 0.07	i : 0.07	4 : 0.05	d : 0.05	2 : 0.03	a : 0.03	e : 0.03	b : 0.03	] : 0.03	> : 0.01	h : 0.01	
= : 0.19	f : 0.13	c : 0.11	g : 0.09	] : 0.09	d : 0.07	2 : 0.05	4 : 0.05	i : 0.05	3 : 0.03	e : 0.03	> : 0.01	h : 0.01	
= : 0.19	f : 0.13	c : 0.11	d : 0.09	2 : 0.09	g : 0.07	e : 0.05	b : 0.05	i : 0.05	3 : 0.03	4 : 0.03	> : 0.01	h : 0.01	
= : 0.19	c : 0.13	f : 0.11	d : 0.11	g : 0.07	i : 0.07	e : 0.05	2 : 0.05	b : 0.05	> : 0.03	] : 0.03	3 : 0.01	4 : 0.01	
= : 0.15	d : 0.13	c : 0.11	f : 0.11	] : 0.09	e : 0.05	2 : 0.05	3 : 0.03	g : 0.03	i : 0.03	b : 0.03	> : 0.03	5 : 0.01	a : 0.01	h : 0.01	4 : 0.01	
= : 0.13	c : 0.11	d : 0.09	3 : 0.07	2 : 0.07	f : 0.07	e : 0.05	] : 0.05	b : 0.05	: : 0.05	5 : 0.03	i : 0.03	> : 0.03	g : 0.01	D : 0.01	h : 0.01	4 : 0.01	

#score	815.0476115795328
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_UTR_m2_run1.txt

#BEAR
dd[bb[a===========mmmm===========]a]b	chr11:32996918-32997236(+)$1	318	55	92	13.7501
===="""bb[ffffffooooooffffff]bb333===	chr12:67704354-67704674(+)$1	320	205	242	14.8805
gggggggeeeee[cccnnnnnccceeeee22gggggg	chr17:62914700-62914993(-)$1	293	12	49	12.1515
ddd!!============nnnnn============22d	chrX:23802217-23802472(+)$1	255	207	244	15.6772
Cccc[ggggggg[cccooooooccc]ggggggg22cc	chr3:137965541-137965802(+)$1	261	33	70	16.9331
cc[iiiiiiiii[ddddnnnnndddd22iiiiiiiii	chr12:976820-977129(+)$1	309	166	203	13.2346
d[bb[a!!dddd!!cccooooooccc22dddd22a]b	chr3:142137129-142137392(-)$1	263	95	132	13.4633
iiiiiii$$$$$ddddooooooddddiiiiiiiii::	chr12:69667862-69668094(+)$1	232	183	220	12.8901
=========ccc[cccqqqqqqqqccc]ccc]=====	chr21:46225714-46225963(-)$1	249	40	77	12.7570
"""iiiiiiiii!!bbmmmmbb333iiiiiiiii22e	chr18:55216715-55217015(-)$1	300	74	111	13.8603
ffff$$$$$gggggggooooooggggggg333fffff	chr17:73774489-73774709(-)$1	220	94	131	13.9593
ggggggg!!ccc[cccooooooccc]ccc22gggggg	chr3:69111226-69111542(-)$1	316	28	65	16.9537
!a[eeeee[affffffooooooffffff]a]eeeee]	chr2:85770052-85770335(+)$1	283	20	57	13.5865
eee[a!!eeeee[cccooooooccceeeee22aeeee	chr3:140682416-140682668(+)$1	252	206	243	14.8843
gggg[dddd####cccooooooccc22dddd22gggg	chrX:102940139-102940451(-)$1	312	201	238	15.0936
""iiiiiiiii!!cccnnnnnccc22iiiiiiiii33	chr5:40760391-40760668(-)$1	277	89	126	16.0282
e!!==========rrrrrrrrr==========eeeee	chr11:116714919-116715217(-)$1	298	94	131	14.1922
e!!ggggggg"""cccoooooocccggggggg4444e	chr12:118796587-118796869(-)$1	282	96	133	18.5075
b!!dddd[ccc[a[bboooooobb]a]ccc333dddd	chr5:137088425-137088673(-)$1	248	100	137	14.4129
)))ggggggg"""cccoooooocccgggggggccc]e	chr4:54265886-54266220(+)$1	334	201	238	16.4383
b!!iiiiiiiii[cccooooooccciiiiiiiii22b	chr4:433684-433936(-)$1	252	133	170	19.7429
eee[ccc!!ffffffooooooffffff4444ccc22e	chr8:102211043-102211284(-)$1	241	129	166	13.3281
=[iiiiiiiii"""cccnnnnnccc]iiiiiiiii==	chr8:74203000-74203300(-)$1	300	199	236	16.1125
!!bb[dddd[ffffffooooooffffff]ddddbb44	chr6:135715725-135716001(-)$1	276	58	95	12.7834
eee[dddd[gggggggooooooggggggg]dddd22e	chr21:34821253-34821486(-)$1	233	43	80	14.7506
dd"""eeeee"""cccooooooccceeeee333dddd	chr19:12299680-12300134(+)$1	454	296	333	15.4409
b==========!!ccc[ammmma]ccc==========	chr7:158432365-158432618(-)$1	253	96	133	15.4325
:ggggggg[ddddcccooooooccc]ddddggggggg	chrX:100646969-100647277(+)$1	308	240	277	14.7317
c[ccc"""bb[bb[bboooooobb]bb]bb]ccc]cc	chr5:80600346-80600655(+)$1	309	197	234	13.2541
####ccc"""ffffffooooooffffffcccffffff	chr1:25568709-25568938(-)$1	229	108	145	14.3350
!!eeeeeccc[a!!bboooooobb22a]ccc4444ee	chr8:6614891-6615173(+)$1	282	150	187	14.9247
"hhhhhhhh####cccooooooccchhhhhhhh333c	chr18:12986037-12986327(+)$1	290	170	207	15.7193
eee[bb!!eeeeecccooooooccc4444eeeee22b	chr20:23356758-23357088(-)$1	330	200	237	15.2448
b[ggggggg!!eeeeeooooooeeeee22ggggggg]	chr3:33438064-33438352(-)$1	288	62	99	14.5854
bb]cccccc[ffffffooooooffffff]cccfffff	chr13:111947292-111947606(+)$1	314	51	88	13.0637
[ccc[ccc[ccc!!bboooooobbccc]ccc]ccc]d	chr12:11089997-11090281(-)$1	284	30	67	15.6628
c!!ccc[iiiiiiiiiooooooiiiiiiiii333ccc	chr15:44813499-44813822(+)$1	323	217	254	17.9441
[cccbb[iiiiiiiiiooooooiiiiiiiii]bb777	chr17:62498607-62498851(-)$1	244	170	207	14.8332
b!!iiiiiiiii[cccooooooccciiiiiiiii22b	chr4:433744-433972(-)$1	228	169	206	19.7429
$$$$$ggggggg!!cccnnnnnccc22ggggggg22d	chr7:22980881-22981179(-)$1	298	119	156	14.3716
g"""ggggggg!!cccqqqqqqqqccc333ggggggg	chr1:78161742-78161977(-)$1	235	106	143	12.5914
dd!!bb[hhhhhhhh[aooooooa]hhhhhhhh333b	chr4:128960600-128960833(+)$1	233	15	52	13.1595
bb!!===========ppppppp===========333b	chr2:192548175-192548468(+)$1	293	24	61	13.3025
:eeeee==========[ammmma]==========>>>	chr21:35470360-35470619(+)$1	259	127	164	12.5972
ccc####eeeee[cccooooooccc22eeeee4444c	chr7:7726676-7727052(+)$1	376	101	138	15.9851
iiiii!!ccc[ccc[cccmmmmccc333cccccc22i	chr21:35478327-35478601(+)$1	274	179	216	13.1908
###ccc[eeeee[cccrrrrrrrrrccc]eeeee]cc	chr6:139248476-139248791(-)$1	315	94	131	12.2276
bb]abb!!===========mmmm===========22b	chr12:111158953-111159208(-)$1	255	110	147	12.8314
C===========!!bboooooobb666666=======	chr4:140311099-140311376(+)$1	277	139	176	13.8550
$$$$ggggggg!!cccnnnnnccc22gggggggeeee	chr7:22980809-22981081(-)$1	272	22	59	13.5243

#otherMatches

#Seq PSSM
AGAGUUGUGAAAUACAUGUGUGUAUGUAUUUUGUCUA	chr11:32996918-32997236(+)$1	318	55	92	13.7501
UUUGUUUUUCAAUAUAAUAUACUGUGUUUAAUAUCAA	chr12:67704354-67704674(+)$1	320	205	242	14.8805
ggaguuucaccguguugcccaggcuggugucgaacuc	chr17:62914700-62914993(-)$1	293	12	49	12.1515
CUUCGCCAUGUACAUGGCCCUUCCGUGUACAUGGAUG	chrX:23802217-23802472(+)$1	255	207	244	15.6772
UGAUAUCAUGUUCUAGAAAUACCUGCAACAUGACAGU	chr3:137965541-137965802(+)$1	261	33	70	16.9331
CACAUAUGAAUGUAUGAAUUACUUGUCUUAUUCAUGU	chr12:976820-977129(+)$1	309	166	203	13.2346
UGCAGUUAUUCAGAAAAUAUGAUUUUGAUGAAGUAGU	chr3:142137129-142137392(-)$1	263	95	132	13.4633
AGUUUGAUAUAUGGCCAUUGUCGGCCUUAAACUGCAC	chr12:69667862-69668094(+)$1	232	183	220	12.8901
GAACCCAUGGAAUGAUGACUUCAUGUUCUUCUCGUGG	chr21:46225714-46225963(-)$1	249	40	77	12.7570
UUUAAUGCAAUAACUGUUAUCAUAAUAUUGUAUUUCG	chr18:55216715-55217015(-)$1	300	74	111	13.8603
UGACUUUUUUUGUAAGAAAUUGUUUAUAAUAUGUUGC	chr17:73774489-73774709(-)$1	220	94	131	13.9593
AGUGCAGCCUAAGUGAAGUGACUCAGUUAAUCUGUAU	chr3:69111226-69111542(-)$1	316	28	65	16.9537
AUUAUGGUACCUCUCAGAAGAGUGAGAGAGAGCUAUU	chr2:85770052-85770335(+)$1	283	20	57	13.5865
ACACUGGCUAUGUGUACAUGCUUACUAUAGAAAUGUU	chr3:140682416-140682668(+)$1	252	206	243	14.8843
AAAGCCAUAUCUCAUAUCUUUUUAUUUUAUGUUCUUU	chrX:102940139-102940451(-)$1	312	201	238	15.0936
UUUGUAUAUGGAAUUAAGUAAUGGCGCUAUAUACGCU	chr5:40760391-40760668(-)$1	277	89	126	16.0282
UAAUAAAUAAAGAGAAAAGGAAUUUUUGUUUAAAUGA	chr11:116714919-116715217(-)$1	298	94	131	14.1922
UUAGUAUGUUGAACUGGAAAUAUAGGACAUGCGUUUG	chr12:118796587-118796869(-)$1	282	96	133	18.5075
CUUGGACCUUGGUCGUUUUUAUACUAGCAAAAUGUCU	chr5:137088425-137088673(-)$1	248	100	137	14.4129
UCUGAAUGUUUUACCAAAAAACUGGAACAUUUUACUU	chr4:54265886-54266220(+)$1	334	201	238	16.4383
GAAAUAAAAAUUGUUAUUGUGUUAAAAUUUUUGUGCC	chr4:433684-433936(-)$1	252	133	170	19.7429
UAAAUGGUUUUAGAAAUUCUGUUCUAACUUUCCACAU	chr8:102211043-102211284(-)$1	241	129	166	13.3281
CCUUUCUGGAGGAAAGGAAAAGCCUGUUUUGGGGAGU	chr8:74203000-74203300(-)$1	300	199	236	16.1125
UUCUACAUCAGUUUGGUUUCACUCAGACCGGUGAGCC	chr6:135715725-135716001(-)$1	276	58	95	12.7834
AAUAUUGUUGUUUGUUGGAGAAAAUGAACCAUAAAAA	chr21:34821253-34821486(-)$1	233	43	80	14.7506
GGUAUGUUAAAUUGUAUAUGGUUGCUUAAUUGUUCUG	chr19:12299680-12300134(+)$1	454	296	333	15.4409
ugaaauaagauuaaaugguuguugguuguuuuguuuu	chr7:158432365-158432618(-)$1	253	96	133	15.4325
CCUGUUCUCGUGAAGUCUUAAAACUCUUAUAGAAUAG	chrX:100646969-100647277(+)$1	308	240	277	14.7317
CUUAAAAAUUGAUAAGGUACCACUGAUGAAAUUAUGA	chr5:80600346-80600655(+)$1	309	197	234	13.2541
CUUGGUUAUGUAAAAAUGAAAUUUUUUAGACACAGUA	chr1:25568709-25568938(-)$1	229	108	145	14.3350
AAUUUGUGACGAAAGCUGAUAUGCAAUGGUCUUGGGC	chr8:6614891-6615173(+)$1	282	150	187	14.9247
AAAUAUUUAAGUUUGCUAAUAUGCGUAAGUAUUAUCG	chr18:12986037-12986327(+)$1	290	170	207	15.7193
AUGCUAUCUUGAUUCAUGAACUUGAUCCUAUUAAUUU	chr20:23356758-23357088(-)$1	330	200	237	15.2448
GAUUUCUUGAAGACGACUGGGUUUGUUGCCAAGAAAA	chr3:33438064-33438352(-)$1	288	62	99	14.5854
CUUUAUCUGUGAAUGGGAAAAGCCAUUUUUAGUAGGU	chr13:111947292-111947606(+)$1	314	51	88	13.0637
uuacuacuuguaauucuuuuuugguaucaguuguaua	chr12:11089997-11090281(-)$1	284	30	67	15.6628
CCAGGUCACAGGUGCCAUCAUAGGcgccuguagugcc	chr15:44813499-44813822(+)$1	323	217	254	17.9441
UCUCCUAUUAUUAGACUUAUUCGUCUAAUGGAAGAGA	chr17:62498607-62498851(-)$1	244	170	207	14.8332
GAAAUAAAAAUUGUUAUUGUGUUAAAAUUUUUGUGCC	chr4:433744-433972(-)$1	228	169	206	19.7429
UCCUAAAGAAUAAACGACGACUUUGGCUAUUUUUGUG	chr7:22980881-22981179(-)$1	298	119	156	14.3716
AAUAAUAUAGUAUGCACUGCUAUUUGCUUGAUUAUGU	chr1:78161742-78161977(-)$1	235	106	143	12.5914
gaagaccucuaaguuugagaccccugAUUUAGAUCUG	chr4:128960600-128960833(+)$1	233	15	52	13.1595
AUGUGAUUUUUUUUUCAGCACUAAAGAAGAAUUUAAA	chr2:192548175-192548468(+)$1	293	24	61	13.3025
AAGCAGUGUUUGAUUAACUUAUGCUAAUCAGAUGAUU	chr21:35470360-35470619(+)$1	259	127	164	12.5972
acugaacuggaaauaauaguauuuggauucuauuuaa	chr7:7726676-7727052(+)$1	376	101	138	15.9851
UUUAUGGAAAUGUUAGCAAUUCUGUACCAACUUUGAA	chr21:35478327-35478601(+)$1	274	179	216	13.1908
UAUACUUUCCCAAAGAGGAUUUUGGUUUAUGGGGUAG	chr6:139248476-139248791(-)$1	315	94	131	12.2276
GGGGGGCUUUUACAGUUGUUGGGGCAGUUGUGAACAC	chr12:111158953-111159208(-)$1	255	110	147	12.8314
UGAAUUUUGUUUAAACUCUACUGUAUAUUGAAAUGAA	chr4:140311099-140311376(+)$1	277	139	176	13.8550
CCUAAAGAAUAAACGACGACUUUGGCUAUUUUUGUGU	chr7:22980809-22981081(-)$1	272	22	59	13.5243

#DB
((.((.((((((((((((....))))))))))).).)	chr11:32996918-32997236(+)$1	1	55	92	13.7501
((((...((.((((((......)))))).))...)))	chr12:67704354-67704674(+)$1	1	205	242	14.8805
((((((((((((.(((.....))))))))..))))))	chr17:62914700-62914993(-)$1	1	12	49	12.1515
(((..((((((((((((.....))))))))))))..)	chrX:23802217-23802472(+)$1	1	207	244	15.6772
((((.(((((((.(((......))).)))))))..))	chr3:137965541-137965802(+)$1	1	33	70	16.9331
((.(((((((((.((((.....))))..)))))))))	chr12:976820-977129(+)$1	1	166	203	13.2346
(.((.(..((((..(((......)))..))))..).)	chr3:142137129-142137392(-)$1	1	95	132	13.4633
(((((((.....((((......)))))))))))))..	chr12:69667862-69668094(+)$1	1	183	220	12.8901
((((((((((((.(((........))).))).)))))	chr21:46225714-46225963(-)$1	1	40	77	12.7570
...(((((((((..((....))...)))))))))..)	chr18:55216715-55217015(-)$1	1	74	111	13.8603
((((.....(((((((......)))))))...)))))	chr17:73774489-73774709(-)$1	1	94	131	13.9593
(((((((..(((.(((......))).)))..))))))	chr3:69111226-69111542(-)$1	1	28	65	16.9537
.(.(((((.(((((((......)))))).).))))).	chr2:85770052-85770335(+)$1	1	20	57	13.5865
(((.(..(((((.(((......))))))))..)))))	chr3:140682416-140682668(+)$1	1	206	243	14.8843
((((.((((....(((......)))..))))..))))	chrX:102940139-102940451(-)$1	1	201	238	15.0936
..(((((((((..(((.....)))..)))))))))..	chr5:40760391-40760668(-)$1	1	89	126	16.0282
(..((((((((((.........)))))))))))))))	chr11:116714919-116715217(-)$1	1	94	131	14.1922
(..(((((((...(((......))))))))))....)	chr12:118796587-118796869(-)$1	1	96	133	18.5075
(..((((.(((.(.((......)).).)))...))))	chr5:137088425-137088673(-)$1	1	100	137	14.4129
...(((((((...(((......))))))))))))).)	chr4:54265886-54266220(+)$1	1	201	238	16.4383
(..(((((((((.(((......))))))))))))..)	chr4:433684-433936(-)$1	1	133	170	19.7429
(((.(((..((((((......))))))....)))..)	chr8:102211043-102211284(-)$1	1	129	166	13.3281
(.(((((((((...(((.....))).)))))))))))	chr8:74203000-74203300(-)$1	1	199	236	16.1125
..((.((((.((((((......)))))).))))))..	chr6:135715725-135716001(-)$1	1	58	95	12.7834
(((.((((.(((((((......))))))).))))..)	chr21:34821253-34821486(-)$1	1	43	80	14.7506
((...(((((...(((......))))))))...))))	chr19:12299680-12300134(+)$1	1	296	333	15.4409
)((((((((((..(((.(....).)))))))))))))	chr7:158432365-158432618(-)$1	1	96	133	15.4325
.(((((((.(((((((......))).)))))))))))	chrX:100646969-100647277(+)$1	1	240	277	14.7317
(.(((...((.((.((......)).)).)).))).))	chr5:80600346-80600655(+)$1	1	197	234	13.2541
....(((...((((((......)))))))))))))))	chr1:25568709-25568938(-)$1	1	108	145	14.3350
..((((((((.(..((......))..).)))....))	chr8:6614891-6615173(+)$1	1	150	187	14.9247
.((((((((....(((......)))))))))))...)	chr18:12986037-12986327(+)$1	1	170	207	15.7193
(((.((..((((((((......)))....)))))..)	chr20:23356758-23357088(-)$1	1	200	237	15.2448
(.(((((((..(((((......)))))..))))))).	chr3:33438064-33438352(-)$1	1	62	99	14.5854
)).)))(((.((((((......)))))).)))(((((	chr13:111947292-111947606(+)$1	1	51	88	13.0637
.(((.(((.(((..((......))))).))).))).)	chr12:11089997-11090281(-)$1	1	30	67	15.6628
(..(((.(((((((((......)))))))))...)))	chr15:44813499-44813822(+)$1	1	217	254	17.9441
.(((((.(((((((((......))))))))).))...	chr17:62498607-62498851(-)$1	1	170	207	14.8332
(..(((((((((.(((......))))))))))))..)	chr4:433744-433972(-)$1	1	169	206	19.7429
.....(((((((..(((.....)))..)))))))..)	chr7:22980881-22981179(-)$1	1	119	156	14.3716
(...(((((((..(((........)))...)))))))	chr1:78161742-78161977(-)$1	1	106	143	12.5914
((..((.((((((((.(......).))))))))...)	chr4:128960600-128960833(+)$1	1	15	52	13.1595
((..(((((((((((.......)))))))))))...)	chr2:192548175-192548468(+)$1	1	24	61	13.3025
.(((((((((((((((.(....).))))))))))...	chr21:35470360-35470619(+)$1	1	127	164	12.5972
(((....(((((.(((......)))..)))))....)	chr7:7726676-7727052(+)$1	1	101	138	15.9851
(((((..(((.(((.(((....)))...))))))..)	chr21:35478327-35478601(+)$1	1	179	216	13.1908
...(((.(((((.(((.........))).))))).))	chr6:139248476-139248791(-)$1	1	94	131	12.2276
)).)((..(((((((((((....)))))))))))..)	chr12:111158953-111159208(-)$1	1	110	147	12.8314
((((((((((((..((......))......)))))))	chr4:140311099-140311376(+)$1	1	139	176	13.8550
....(((((((..(((.....)))..)))))))))))	chr7:22980809-22981081(-)$1	1	22	59	13.5243

#PSSM
b : 0.16	e : 0.12	d : 0.10	g : 0.08	c : 0.08	= : 0.06	" : 0.06	! : 0.06	C : 0.04	i : 0.04	: : 0.04	# : 0.04	[ : 0.04	$ : 0.04	f : 0.02	) : 0.02	
! : 0.16	c : 0.10	e : 0.10	d : 0.08	= : 0.08	g : 0.08	[ : 0.08	" : 0.06	b : 0.06	i : 0.04	# : 0.04	$ : 0.04	f : 0.02	a : 0.02	) : 0.02	h : 0.02	
! : 0.16	e : 0.12	g : 0.10	c : 0.10	= : 0.08	i : 0.08	[ : 0.06	" : 0.06	b : 0.04	# : 0.04	] : 0.04	$ : 0.04	d : 0.02	f : 0.02	) : 0.02	h : 0.02	
i : 0.16	g : 0.14	c : 0.14	= : 0.10	[ : 0.08	b : 0.06	! : 0.06	e : 0.06	" : 0.04	# : 0.04	$ : 0.04	f : 0.02	d : 0.02	h : 0.02	a : 0.02	
g : 0.16	i : 0.16	c : 0.12	b : 0.10	[ : 0.10	= : 0.10	e : 0.06	" : 0.04	$ : 0.04	d : 0.04	! : 0.02	a : 0.02	h : 0.02	# : 0.02	
g : 0.19	i : 0.14	= : 0.12	c : 0.12	e : 0.08	d : 0.08	b : 0.08	" : 0.04	! : 0.04	[ : 0.02	a : 0.02	$ : 0.02	h : 0.02	# : 0.02	
g : 0.19	= : 0.14	i : 0.14	! : 0.10	d : 0.08	c : 0.08	[ : 0.08	e : 0.06	" : 0.04	a : 0.02	$ : 0.02	h : 0.02	# : 0.02	
= : 0.16	g : 0.16	i : 0.16	e : 0.12	! : 0.10	c : 0.08	d : 0.06	$ : 0.04	" : 0.04	h : 0.04	b : 0.02	[ : 0.02	
= : 0.18	i : 0.16	g : 0.14	e : 0.12	[ : 0.08	c : 0.08	d : 0.06	b : 0.04	$ : 0.04	! : 0.04	h : 0.04	" : 0.02	
= : 0.16	g : 0.16	i : 0.16	e : 0.12	c : 0.12	[ : 0.06	d : 0.04	# : 0.04	$ : 0.02	a : 0.02	f : 0.02	b : 0.02	" : 0.02	! : 0.02	h : 0.02	
= : 0.16	i : 0.16	f : 0.12	g : 0.12	e : 0.10	c : 0.08	" : 0.06	[ : 0.06	d : 0.04	# : 0.04	$ : 0.02	! : 0.02	h : 0.02	
= : 0.14	f : 0.12	e : 0.12	i : 0.12	g : 0.08	c : 0.08	! : 0.08	" : 0.08	d : 0.04	# : 0.04	$ : 0.02	[ : 0.02	b : 0.02	a : 0.02	h : 0.02	
[ : 0.19	! : 0.19	= : 0.12	f : 0.12	" : 0.08	d : 0.04	g : 0.04	# : 0.04	e : 0.04	i : 0.04	a : 0.02	b : 0.02	h : 0.02	c : 0.02	
c : 0.42	f : 0.12	! : 0.12	= : 0.10	d : 0.04	g : 0.04	[ : 0.04	i : 0.04	r : 0.02	" : 0.02	e : 0.02	h : 0.02	
c : 0.46	f : 0.12	b : 0.12	= : 0.10	d : 0.04	g : 0.04	i : 0.04	r : 0.02	e : 0.02	h : 0.02	[ : 0.02	
c : 0.48	b : 0.12	f : 0.10	= : 0.08	d : 0.04	g : 0.04	i : 0.04	r : 0.02	o : 0.02	e : 0.02	[ : 0.02	p : 0.02	
o : 0.60	c : 0.08	= : 0.06	n : 0.06	q : 0.04	r : 0.04	[ : 0.04	d : 0.02	m : 0.02	a : 0.02	p : 0.02	
o : 0.64	n : 0.14	= : 0.04	q : 0.04	r : 0.04	a : 0.04	m : 0.02	p : 0.02	c : 0.02	
o : 0.64	n : 0.14	m : 0.10	q : 0.04	r : 0.04	p : 0.02	= : 0.02	
o : 0.64	n : 0.14	m : 0.12	q : 0.04	r : 0.04	p : 0.02	
o : 0.64	n : 0.14	m : 0.10	q : 0.04	r : 0.04	b : 0.02	p : 0.02	
o : 0.62	m : 0.10	n : 0.08	c : 0.06	q : 0.04	r : 0.04	b : 0.02	f : 0.02	p : 0.02	
c : 0.38	f : 0.12	b : 0.10	= : 0.08	d : 0.04	o : 0.04	q : 0.04	g : 0.04	a : 0.04	i : 0.04	3 : 0.02	e : 0.02	r : 0.02	m : 0.02	
c : 0.40	f : 0.12	= : 0.10	b : 0.10	d : 0.04	q : 0.04	g : 0.04	] : 0.04	i : 0.04	3 : 0.02	e : 0.02	a : 0.02	r : 0.02	
c : 0.42	= : 0.12	f : 0.12	2 : 0.06	] : 0.06	e : 0.04	d : 0.04	g : 0.04	i : 0.04	3 : 0.02	r : 0.02	6 : 0.02	
= : 0.12	f : 0.12	c : 0.12	2 : 0.12	i : 0.10	e : 0.08	] : 0.08	g : 0.08	d : 0.04	h : 0.04	a : 0.02	b : 0.02	4 : 0.02	3 : 0.02	6 : 0.02	
i : 0.16	= : 0.12	f : 0.12	g : 0.12	c : 0.12	2 : 0.10	e : 0.08	h : 0.04	] : 0.02	d : 0.02	b : 0.02	a : 0.02	4 : 0.02	3 : 0.02	6 : 0.02	
i : 0.16	= : 0.14	g : 0.14	f : 0.10	e : 0.08	] : 0.08	2 : 0.06	c : 0.06	d : 0.04	4 : 0.04	h : 0.04	3 : 0.04	6 : 0.02	
i : 0.18	= : 0.14	g : 0.14	c : 0.14	] : 0.10	e : 0.08	d : 0.06	4 : 0.04	h : 0.04	b : 0.02	2 : 0.02	3 : 0.02	6 : 0.02	
i : 0.18	= : 0.14	c : 0.14	g : 0.12	e : 0.10	d : 0.08	b : 0.04	2 : 0.04	3 : 0.04	h : 0.04	a : 0.02	4 : 0.02	] : 0.02	6 : 0.02	
i : 0.18	= : 0.16	g : 0.16	c : 0.12	d : 0.08	2 : 0.06	3 : 0.06	e : 0.06	] : 0.04	h : 0.04	b : 0.02	4 : 0.02	
g : 0.19	= : 0.16	i : 0.14	3 : 0.10	e : 0.08	c : 0.08	d : 0.06	] : 0.06	2 : 0.04	h : 0.04	f : 0.02	4 : 0.02	
= : 0.16	g : 0.16	i : 0.14	c : 0.10	3 : 0.08	e : 0.08	f : 0.06	4 : 0.06	2 : 0.04	d : 0.04	h : 0.04	a : 0.02	b : 0.02	
g : 0.14	i : 0.14	= : 0.12	e : 0.12	3 : 0.10	c : 0.10	f : 0.06	4 : 0.06	d : 0.06	2 : 0.04	b : 0.04	] : 0.02	
2 : 0.21	g : 0.12	= : 0.08	i : 0.08	e : 0.08	f : 0.06	4 : 0.06	c : 0.06	3 : 0.06	a : 0.04	d : 0.04	] : 0.04	b : 0.02	7 : 0.02	> : 0.02	
2 : 0.19	g : 0.12	= : 0.10	e : 0.10	] : 0.08	c : 0.08	3 : 0.08	f : 0.06	4 : 0.06	d : 0.04	i : 0.02	: : 0.02	7 : 0.02	> : 0.02	
e : 0.18	b : 0.16	c : 0.12	= : 0.10	g : 0.10	d : 0.10	f : 0.06	i : 0.04	] : 0.04	: : 0.02	3 : 0.02	4 : 0.02	7 : 0.02	> : 0.02	

#score	732.9257154905318
#seq	50
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_UTR_m3_run1.txt

#BEAR
cc[ddddpppppppddddccc	chr7:139102183-139102535(+)$1	352	114	135	15.6723
e[addddpppppppdddd444	chr20:34309663-34309900(-)$1	237	77	98	15.9814
ccc[cccpppppppccc]ccc	chr17:56083602-56083814(-)$1	212	114	135	14.4881
"""ddddpppppppdddd333	chr3:187446982-187447233(-)$1	251	62	83	16.5532
gggddddpppppppdddd]gg	chr2:61607203-61607450(-)$1	247	98	119	15.8911
eeddddrrrrrrrrrdddd]e	chr3:156870760-156870999(-)$1	239	144	165	11.2212
cc[cccrrrrrrrrrccc]cc	chr2:161349801-161350149(-)$1	348	38	59	11.3426
[eeeeerrrrrrrrreeeee]	chr1:93300335-93300570(+)$1	235	115	136	10.8779
gg[ddddpppppppddddggg	chr4:74285137-74285348(+)$1	211	165	186	15.8983
fff[cccpppppppccc22ff	chrX:20284790-20285040(-)$1	250	65	86	13.8711
gggggggpppppppggggggg	chr6:56382282-56382519(-)$1	237	156	177	14.0878
gggggggpppppppggggggg	chr8:97243180-97243458(-)$1	278	223	244	14.0878
gggggggpppppppggggggg	chr4:74272258-74272467(+)$1	209	71	92	14.0878
d[a[cccpppppppccc]a33	chr2:75745096-75745442(-)$1	346	93	114	15.0923
c[eeeeerrrrrrrrreeeee	chr20:4913137-4913458(-)$1	321	114	135	10.8799
iiiiiiipppppppiiiiiii	chr17:48827847-48828164(+)$1	317	179	200	14.1843
!!eeeeepppppppeeeee22	chr20:34293067-34293342(-)$1	275	173	194	14.7799
hheeeeepppppppeeeee77	chr9:37588634-37589030(-)$1	396	6	27	13.4299
eeeee[apppppppa]eeeee	chr7:75609555-75609791(+)$1	236	98	119	13.6537
:a[ddddpppppppdddd]a:	chr12:76444256-76444533(-)$1	277	141	162	14.3207
iiiiiiipppppppiiiiiii	chr17:48827770-48828047(+)$1	277	77	98	14.1843
gg[ddddpppppppddddggg	chr7:23561640-23561973(-)$1	333	291	312	15.8983
ddd[cccpppppppcccdddd	chr2:182757239-182757489(+)$1	250	186	207	13.9749
[a[ddddpppppppdddda]c	chr6:24357655-24357966(-)$1	311	284	305	16.1158
[bb[cccpppppppcccbb]e	chr17:27440928-27441204(-)$1	276	147	168	13.5531
cccddddpppppppdddd22c	chr15:93552279-93552537(+)$1	258	173	194	15.4206
gggddddpppppppdddd]gg	chr12:30881592-30881916(-)$1	324	208	229	15.8911
"""cccrrrrrrrrrccc]cc	chr19:15383767-15384022(-)$1	255	204	225	11.5258
dd!!cccpppppppccc]ddd	chr22:37906118-37906396(-)$1	278	84	105	14.1960
e[addddpppppppdddd555	chr12:46764956-46765196(-)$1	240	77	98	13.7744
gggggggpppppppggggggg	chr4:74272267-74272485(+)$1	218	62	83	14.0878
""eeeeepppppppeeeee33	chr17:72205841-72206085(+)$1	244	53	74	15.1988
!!eeeeepppppppeeeee55	chr5:75996813-75997093(+)$1	280	14	35	13.7630
=======ppppppp=======	chr1:11076928-11077167(+)$1	239	176	197	14.6239
"""ddddpppppppdddd]gg	chr10:70101632-70101932(+)$1	300	55	76	16.2037
bbeeeeepppppppeeeee]b	chr13:98995912-98996223(+)$1	311	187	208	13.8924
%%%ddddpppppppdddd444	chr7:100780636-100780860(+)$1	224	51	72	14.3443
c[eeeeepppppppeeeee]c	chr2:61575360-61575613(-)$1	253	84	105	14.9277
ee[ddddrrrrrrrrrdddde	chr16:69693527-69693820(+)$1	293	79	100	11.3452
"""ddddpppppppdddd333	chr3:187447033-187447286(-)$1	253	115	136	16.5532
hh!!cccpppppppccc22hh	chr8:97243901-97244255(-)$1	354	78	99	13.9630
####cccpppppppccccccc	chr15:72501921-72502143(-)$1	222	14	35	14.7407
eeee[bbpppppppbb]eeee	chr9:127620079-127620365(-)$1	286	115	136	12.5313
[a[cccrrrrrrrrrccc]ae	chr14:39565191-39565444(-)$1	253	179	200	11.4666
:a[ddddpppppppdddd]a:	chr12:76444210-76444456(-)$1	246	64	85	14.3207
)ffffffpppppppffffff9	chr2:207027112-207027329(+)$1	217	179	200	11.7954
gg[ddddrrrrrrrrrddddg	chr2:219294475-219294729(+)$1	254	21	42	11.7747
c[eeeeepppppppeeeee]c	chr12:76442091-76442344(-)$1	253	81	102	14.9277
)))ddddpppppppdddd444	chr3:25653909-25654235(-)$1	326	127	148	14.5915
g!!ddddpppppppdddd]gg	chr7:22354888-22355193(-)$1	305	117	138	16.2794
d!!ddddpppppppdddd22d	chr12:56495502-56495799(+)$1	297	273	294	15.6857
fff[cccpppppppccc4444	chr20:25433986-25434235(-)$1	249	182	203	14.6762
cccddddpppppppdddd]cc	chr17:36861760-36862094(+)$1	334	134	155	15.6408
)a[ddddpppppppdddd]a9	chr15:66791639-66791967(-)$1	328	109	130	15.1862
gg[ddddpppppppdddd]gg	chr12:57108284-57108566(-)$1	282	57	78	16.1432
=bbddddpppppppdddd]bb	chr11:130011360-130011568(+)$1	208	161	182	14.6146
[ffffffpppppppffffff]	chr14:31163891-31164143(+)$1	252	30	51	12.8819
ddd[cccpppppppccc]ddd	chr17:48796968-48797284(+)$1	316	161	182	13.7940
ggg!!bbpppppppbb22ggg	chr10:28822051-28822387(+)$1	336	15	36	12.6715
c[eeeeepppppppeeeee]c	chr7:98995427-98995687(-)$1	260	79	100	14.9277
ff[ddddrrrrrrrrrdddd]	chr11:129979373-129979597(+)$1	224	81	102	11.4951
!!eeeeepppppppeeeee]c	chr15:72500903-72501183(-)$1	280	44	65	15.1134
ddd[cccpppppppccc]ddd	chr2:202014421-202014659(+)$1	238	48	69	13.7940

#otherMatches

#Seq PSSM
AGCAUCGCAGACAUCGAUCUC	chr7:139102183-139102535(+)$1	352	114	135	15.6723
UGUGACGUGUAUUUUGUCUUC	chr20:34309663-34309900(-)$1	237	77	98	15.9814
AGUGUACUGGUUGUGUGGAUU	chr17:56083602-56083814(-)$1	212	114	135	14.4881
CCAACUCGCCCACAGAGUCCU	chr3:187446982-187447233(-)$1	251	62	83	16.5532
UAUGUCACCUACUUUGACUAU	chr2:61607203-61607450(-)$1	247	98	119	15.8911
AUUUUGUGUUCAUGUCAAGCA	chr3:156870760-156870999(-)$1	239	144	165	11.2212
CUGCCUGggaggaggaggagg	chr2:161349801-161350149(-)$1	348	38	59	11.3426
GCCUGCUGCUGGCCCGCAGGG	chr1:93300335-93300570(+)$1	235	115	136	10.8779
UUUGUAGAGAAGUGCUGCAAG	chr4:74285137-74285348(+)$1	211	165	186	15.8983
CGCGGGCGUCUCUGGCCAGGC	chrX:20284790-20285040(-)$1	250	65	86	13.8711
UGAUGUCUCUGGGUGACAUCA	chr6:56382282-56382519(-)$1	237	156	177	14.0878
CUUGAAACAAACAAUUUUAAG	chr8:97243180-97243458(-)$1	278	223	244	14.0878
ACAUCCUUUGUUUCAGGGUGU	chr4:74272258-74272467(+)$1	209	71	92	14.0878
UAUGUUCCCAAACAGAAGAGA	chr2:75745096-75745442(-)$1	346	93	114	15.0923
UGCAGGCCUCAUCUCUGCUUG	chr20:4913137-4913458(-)$1	321	114	135	10.8799
GAUCUGAUAAGACCUCAGAUC	chr17:48827847-48828164(+)$1	317	179	200	14.1843
AUGUUGACAAAAAUUCAGCUC	chr20:34293067-34293342(-)$1	275	173	194	14.7799
UUUUCAAAAACAUGUUGAAUA	chr9:37588634-37589030(-)$1	396	6	27	13.4299
CAGGCCGACCUGAGCAGCCUG	chr7:75609555-75609791(+)$1	236	98	119	13.6537
UGGUCACUUUUUACGUGAGCG	chr12:76444256-76444533(-)$1	277	141	162	14.3207
UUCUUUUAUGGCAGAAAAGAG	chr17:48827770-48828047(+)$1	277	77	98	14.1843
CUUAGUUAAUAGAGAAUUGGU	chr7:23561640-23561973(-)$1	333	291	312	15.8983
CCGUGCGGACGGGACGCCGGA	chr2:182757239-182757489(+)$1	250	186	207	13.9749
AGUCGGUCUCCCCCACCGCCC	chr6:24357655-24357966(-)$1	311	284	305	16.1158
CUGUGGACCAGGCCUCCCAUC	chr17:27440928-27441204(-)$1	276	147	168	13.5531
CAGCUGGAACACACCCGGAAC	chr15:93552279-93552537(+)$1	258	173	194	15.4206
UGAGAGUCAAAAACACUCUUU	chr12:30881592-30881916(-)$1	324	208	229	15.8911
CCAGGCCCAACCCCAGCCAGC	chr19:15383767-15384022(-)$1	255	204	225	11.5258
ggagCCAGACAAUGUGGACCU	chr22:37906118-37906396(-)$1	278	84	105	14.1960
GCCCAGCGCUACUAGCUGCAC	chr12:46764956-46765196(-)$1	240	77	98	13.7744
ACAUCCUUUGUUUCAGGGUGU	chr4:74272267-74272485(+)$1	218	62	83	14.0878
ACUCAGAUGUGUCUUCUGGAU	chr17:72205841-72206085(+)$1	244	53	74	15.1988
UAUGGUAAUCGCACUACCAGA	chr5:75996813-75997093(+)$1	280	14	35	13.7630
AAUGAGUAUCUAGCAUUUAUU	chr1:11076928-11077167(+)$1	239	176	197	14.6239
UAUGCAGAUAUCUCCUGCUGA	chr10:70101632-70101932(+)$1	300	55	76	16.2037
CCUGAUCACAAAAAGAUCACG	chr13:98995912-98996223(+)$1	311	187	208	13.8924
ACAGUCCUUUUCAUGGGCCAA	chr7:100780636-100780860(+)$1	224	51	72	14.3443
UGGAUCUAGCAAUGAGGUUAA	chr2:61575360-61575613(-)$1	253	84	105	14.9277
UAUAUAUUUUUUUUCUGUAUU	chr16:69693527-69693820(+)$1	293	79	100	11.3452
CCAACUCGCCCACAGAGUCCU	chr3:187447033-187447286(-)$1	253	115	136	16.5532
CUAUCAUAGGGUUAAUGCGAG	chr8:97243901-97244255(-)$1	354	78	99	13.9630
AAAGUGUGACGAGAACAUCCU	chr15:72501921-72502143(-)$1	222	14	35	14.7407
CAGCAGCGGAAGGAGCGGCUG	chr9:127620079-127620365(-)$1	286	115	136	12.5313
AGUUGGAAUGUUUGGCCAUCA	chr14:39565191-39565444(-)$1	253	179	200	11.4666
UGGUCACUUUUUACGUGAGCG	chr12:76444210-76444456(-)$1	246	64	85	14.3207
GGAGUGCGUCAGAAGCAUUCA	chr2:207027112-207027329(+)$1	217	179	200	11.7954
AGACUUUUUUGUGUGUGAGGC	chr2:219294475-219294729(+)$1	254	21	42	11.7747
UGUUGUUUUCCUUUAACAGAA	chr12:76442091-76442344(-)$1	253	81	102	14.9277
CCAGUUGGAAGAGACAAUGCC	chr3:25653909-25654235(-)$1	326	127	148	14.5915
CUUGUGCAGGAAGAGCAUUGA	chr7:22354888-22355193(-)$1	305	117	138	16.2794
CUUUGAUAACCCUGAUUACUG	chr12:56495502-56495799(+)$1	297	273	294	15.6857
ACAUCUUUUAAAUUAAGCCAC	chr20:25433986-25434235(-)$1	249	182	203	14.6762
AUGGUAGGAGGCUGCUGCGUA	chr17:36861760-36862094(+)$1	334	134	155	15.6408
AAGCAGAAGAAGCCUCUGGUG	chr15:66791639-66791967(-)$1	328	109	130	15.1862
UUCUACUAUAAAGCAGUAAAA	chr12:57108284-57108566(-)$1	282	57	78	16.1432
UCUGGACCUUCUCAGUUCAAG	chr11:130011360-130011568(+)$1	208	161	182	14.6146
AUCAUUAUGUAUUUUAAUGAC	chr14:31163891-31164143(+)$1	252	30	51	12.8819
GGCCGGGACCGAAACCUAGCC	chr17:48796968-48797284(+)$1	316	161	182	13.7940
GUGGAgcggcagcggcggcac	chr10:28822051-28822387(+)$1	336	15	36	12.6715
GAGCGUUACAUGAAAAUGCAC	chr7:98995427-98995687(-)$1	260	79	100	14.9277
CUGCUUUGAAACAAAAGAAGA	chr11:129979373-129979597(+)$1	224	81	102	11.4951
CUGUGUCGGAGAAGGACAUCC	chr15:72500903-72501183(-)$1	280	44	65	15.1134
UUUCCAGAGCAUACCUGAAGA	chr2:202014421-202014659(+)$1	238	48	69	13.7940

#DB
((.((((.......)))))))	chr7:139102183-139102535(+)$1	1	114	135	15.6723
(.(((((.......))))...	chr20:34309663-34309900(-)$1	1	77	98	15.9814
(((.(((.......))).)))	chr17:56083602-56083814(-)$1	1	114	135	14.4881
...((((.......))))...	chr3:187446982-187447233(-)$1	1	62	83	16.5532
(((((((.......)))).))	chr2:61607203-61607450(-)$1	1	98	119	15.8911
((((((.........)))).)	chr3:156870760-156870999(-)$1	1	144	165	11.2212
((.(((.........))).))	chr2:161349801-161350149(-)$1	1	38	59	11.3426
.(((((.........))))).	chr1:93300335-93300570(+)$1	1	115	136	10.8779
((.((((.......)))))))	chr4:74285137-74285348(+)$1	1	165	186	15.8983
(((.(((.......)))..))	chrX:20284790-20285040(-)$1	1	65	86	13.8711
(((((((.......)))))))	chr6:56382282-56382519(-)$1	1	156	177	14.0878
(((((((.......)))))))	chr8:97243180-97243458(-)$1	1	223	244	14.0878
(((((((.......)))))))	chr4:74272258-74272467(+)$1	1	71	92	14.0878
(.(.(((.......))).)..	chr2:75745096-75745442(-)$1	1	93	114	15.0923
(.(((((.........)))))	chr20:4913137-4913458(-)$1	1	114	135	10.8799
(((((((.......)))))))	chr17:48827847-48828164(+)$1	1	179	200	14.1843
..(((((.......)))))..	chr20:34293067-34293342(-)$1	1	173	194	14.7799
(((((((.......)))))..	chr9:37588634-37589030(-)$1	1	6	27	13.4299
(((((.(.......).)))))	chr7:75609555-75609791(+)$1	1	98	119	13.6537
.(.((((.......)))).).	chr12:76444256-76444533(-)$1	1	141	162	14.3207
(((((((.......)))))))	chr17:48827770-48828047(+)$1	1	77	98	14.1843
((.((((.......)))))))	chr7:23561640-23561973(-)$1	1	291	312	15.8983
(((.(((.......)))))))	chr2:182757239-182757489(+)$1	1	186	207	13.9749
.(.((((.......))))).)	chr6:24357655-24357966(-)$1	1	284	305	16.1158
.((.(((.......))))).)	chr17:27440928-27441204(-)$1	1	147	168	13.5531
(((((((.......))))..)	chr15:93552279-93552537(+)$1	1	173	194	15.4206
(((((((.......)))).))	chr12:30881592-30881916(-)$1	1	208	229	15.8911
...(((.........))).))	chr19:15383767-15384022(-)$1	1	204	225	11.5258
((..(((.......))).)))	chr22:37906118-37906396(-)$1	1	84	105	14.1960
(.(((((.......))))...	chr12:46764956-46765196(-)$1	1	77	98	13.7744
(((((((.......)))))))	chr4:74272267-74272485(+)$1	1	62	83	14.0878
..(((((.......)))))..	chr17:72205841-72206085(+)$1	1	53	74	15.1988
..(((((.......)))))..	chr5:75996813-75997093(+)$1	1	14	35	13.7630
(((((((.......)))))))	chr1:11076928-11077167(+)$1	1	176	197	14.6239
...((((.......)))).))	chr10:70101632-70101932(+)$1	1	55	76	16.2037
(((((((.......))))).)	chr13:98995912-98996223(+)$1	1	187	208	13.8924
...((((.......))))...	chr7:100780636-100780860(+)$1	1	51	72	14.3443
(.(((((.......))))).)	chr2:61575360-61575613(-)$1	1	84	105	14.9277
((.((((.........)))))	chr16:69693527-69693820(+)$1	1	79	100	11.3452
...((((.......))))...	chr3:187447033-187447286(-)$1	1	115	136	16.5532
((..(((.......)))..))	chr8:97243901-97244255(-)$1	1	78	99	13.9630
....(((.......)))))))	chr15:72501921-72502143(-)$1	1	14	35	14.7407
((((.((.......)).))))	chr9:127620079-127620365(-)$1	1	115	136	12.5313
.(.(((.........))).))	chr14:39565191-39565444(-)$1	1	179	200	11.4666
.(.((((.......)))).).	chr12:76444210-76444456(-)$1	1	64	85	14.3207
.((((((.......)))))).	chr2:207027112-207027329(+)$1	1	179	200	11.7954
((.((((.........)))))	chr2:219294475-219294729(+)$1	1	21	42	11.7747
(.(((((.......))))).)	chr12:76442091-76442344(-)$1	1	81	102	14.9277
...((((.......))))...	chr3:25653909-25654235(-)$1	1	127	148	14.5915
(..((((.......)))).))	chr7:22354888-22355193(-)$1	1	117	138	16.2794
(..((((.......))))..)	chr12:56495502-56495799(+)$1	1	273	294	15.6857
(((.(((.......)))....	chr20:25433986-25434235(-)$1	1	182	203	14.6762
(((((((.......)))).))	chr17:36861760-36862094(+)$1	1	134	155	15.6408
.(.((((.......)))).).	chr15:66791639-66791967(-)$1	1	109	130	15.1862
((.((((.......)))).))	chr12:57108284-57108566(-)$1	1	57	78	16.1432
(((((((.......)))).))	chr11:130011360-130011568(+)$1	1	161	182	14.6146
.((((((.......)))))).	chr14:31163891-31164143(+)$1	1	30	51	12.8819
(((.(((.......))).)))	chr17:48796968-48797284(+)$1	1	161	182	13.7940
(((..((.......))..)))	chr10:28822051-28822387(+)$1	1	15	36	12.6715
(.(((((.......))))).)	chr7:98995427-98995687(-)$1	1	79	100	14.9277
((.((((.........)))).	chr11:129979373-129979597(+)$1	1	81	102	11.4951
..(((((.......))))).)	chr15:72500903-72501183(-)$1	1	44	65	15.1134
(((.(((.......))).)))	chr2:202014421-202014659(+)$1	1	48	69	13.7940

#PSSM
g : 0.19	c : 0.14	e : 0.09	d : 0.09	" : 0.07	[ : 0.07	f : 0.04	! : 0.04	) : 0.04	i : 0.03	h : 0.03	: : 0.03	= : 0.03	b : 0.01	% : 0.01	# : 0.01	
g : 0.17	[ : 0.11	c : 0.07	" : 0.07	e : 0.07	f : 0.07	! : 0.07	a : 0.07	d : 0.06	b : 0.04	i : 0.03	h : 0.03	= : 0.01	% : 0.01	# : 0.01	) : 0.01	
[ : 0.20	e : 0.20	g : 0.11	" : 0.06	d : 0.06	f : 0.06	! : 0.06	a : 0.04	c : 0.04	i : 0.03	b : 0.03	= : 0.01	% : 0.01	# : 0.01	) : 0.01	
d : 0.41	e : 0.20	[ : 0.12	g : 0.06	c : 0.04	! : 0.04	i : 0.03	f : 0.03	= : 0.01	# : 0.01	
d : 0.41	c : 0.22	e : 0.19	g : 0.06	i : 0.03	f : 0.03	= : 0.01	[ : 0.01	! : 0.01	
d : 0.41	c : 0.22	e : 0.17	g : 0.06	i : 0.03	b : 0.03	f : 0.03	[ : 0.01	= : 0.01	
d : 0.39	c : 0.17	e : 0.15	r : 0.07	g : 0.06	i : 0.03	b : 0.03	f : 0.03	a : 0.01	= : 0.01	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
p : 0.85	r : 0.14	
d : 0.34	c : 0.17	r : 0.14	e : 0.14	g : 0.06	i : 0.03	b : 0.03	f : 0.03	a : 0.01	= : 0.01	
d : 0.36	c : 0.22	e : 0.15	g : 0.06	r : 0.06	i : 0.03	b : 0.03	f : 0.03	] : 0.01	= : 0.01	
d : 0.41	c : 0.22	e : 0.19	g : 0.06	i : 0.03	f : 0.03	= : 0.01	] : 0.01	2 : 0.01	
d : 0.42	e : 0.20	] : 0.07	c : 0.06	g : 0.06	2 : 0.04	i : 0.03	f : 0.03	b : 0.01	= : 0.01	4 : 0.01	
] : 0.20	e : 0.20	d : 0.12	g : 0.11	4 : 0.06	2 : 0.06	c : 0.04	3 : 0.03	a : 0.03	i : 0.03	f : 0.03	b : 0.01	5 : 0.01	= : 0.01	
g : 0.19	] : 0.12	d : 0.11	c : 0.09	4 : 0.06	3 : 0.06	e : 0.06	a : 0.06	f : 0.04	2 : 0.04	i : 0.03	5 : 0.03	7 : 0.01	= : 0.01	h : 0.01	b : 0.01	
g : 0.20	c : 0.19	e : 0.11	d : 0.07	4 : 0.06	3 : 0.06	] : 0.04	i : 0.03	: : 0.03	5 : 0.03	b : 0.03	9 : 0.03	f : 0.01	2 : 0.01	7 : 0.01	= : 0.01	h : 0.01	

#score	892.8943122027005
#seq	63
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_transcript_m3_run2.txt

#BEAR
f!!ddddnnnnndddd333	chrX:152980972-152981236(-)$1	264	168	187	11.6299
bffffffnnnnnffffff]	chr7:6066486-6066693(-)$1	207	10	29	10.3359
[ffffffnnnnnffffff]	chr18:43667979-43668258(-)$1	279	185	204	10.7661
##eeeeennnnneeeee33	chr4:57314775-57315049(+)$1	274	210	229	11.6518
gggggggnnnnnggggggg	chr11:118279750-118279998(+)$1	248	40	59	12.0072
[ffffffnnnnnffffff]	chr22:20762132-20762405(+)$1	273	65	84	10.7661
e"""cccnnnnnccc333e	chr19:59066138-59066412(-)$1	274	53	72	12.4403
c[eeeeennnnneeeee33	chr13:47356728-47357027(-)$1	299	80	99	11.6051
gggggggnnnnnggggggg	chr1:40209395-40209687(+)$1	292	101	120	12.0072
gggggggnnnnnggggggg	chr3:58106927-58107219(+)$1	292	26	45	12.0072
=======nnnnn=======	chr2:63283907-63284176(+)$1	269	108	127	12.0364
!!eeeeennnnneeeeecc	chr13:99575461-99575699(-)$1	238	82	101	11.3938
e!!ddddnnnnnddddeee	chr8:48885452-48885711(+)$1	259	147	166	10.8626
ggggg[annnnna]ggggg	chr13:25909067-25909337(+)$1	270	211	230	11.7036
ddd[cccnnnnnccc]ddd	chr3:33110272-33110490(-)$1	218	182	201	10.7703
$$$$$bbnnnnnbb4444f	chr1:38449750-38450006(-)$1	256	10	29	10.2121
eee!!bbnnnnnbb]eeee	chr1:45480909-45481142(+)$1	233	49	68	10.4334
gggggggnnnnnggggggg	chr15:76225103-76225376(+)$1	273	245	264	12.0072
$$$ddddnnnnnddddfff	chr17:57759922-57760148(+)$1	226	192	211	10.5237
ff[ddddnnnnndddd22f	chr11:43349237-43349481(+)$1	244	75	94	10.6379
###ddddnnnnndddd333	chr11:105968041-105968327(+)$1	286	11	30	11.6181
eeeecccnnnnnccc]eee	chr17:1564803-1565012(-)$1	209	32	51	11.2708
cceeeeennnnneeeee22	chr19:28990200-28990409(-)$1	209	104	123	10.9227
f"""cccnnnnnccc22ff	chr10:64968133-64968391(-)$1	258	34	53	11.9122
f"""cccnnnnnccc]fff	chr11:62288268-62288597(-)$1	329	265	284	12.2552
gggggggnnnnnggggggg	chr1:65615067-65615336(+)$1	269	14	33	12.0072
fffffbbnnnnnbb]ffff	chr1:27107621-27107908(+)$1	287	188	207	10.2339
gggggggoooooogggggg	chr19:41830272-41830556(+)$1	284	107	126	7.4258
[a[ddddnnnnnddddagg	chr2:135911163-135911452(+)$1	289	89	108	11.1526
gg!!cccnnnnncccgggg	chr5:179155557-179155796(+)$1	239	212	231	12.4818
ggg[cccnnnnnccc]ggg	chr8:28917710-28917924(+)$1	214	94	113	12.4156
c[a[cccnnnnnccc]a]c	chr1:206903930-206904134(+)$1	204	139	158	12.3581
ffff[bbnnnnnbbfffff	chr16:29678592-29678867(+)$1	275	159	178	10.2921
cc[ddddnnnnnddddccc	chr2:25062641-25062868(-)$1	227	64	83	10.7651
cceeeeennnnneeeee22	chr19:28990182-28990400(-)$1	218	95	114	10.9227
g[a[cccnnnnnccc]agg	chr19:10792698-10792964(+)$1	266	157	176	12.4522
$$$$$bbnnnnnbb333dd	chr10:74767585-74767813(-)$1	228	122	141	10.1212
cccbb[annnnna]bb]cc	chr22:36681066-36681333(-)$1	267	149	168	9.6538
!!eeeeennnnneeeee]c	chrX:153581267-153581484(-)$1	217	7	26	11.5744
b####bbnnnnnbb333bb	chr9:127177031-127177298(-)$1	267	84	103	10.3570
gggggggnnnnnggggggg	chr16:2130073-2130338(+)$1	265	78	97	12.0072
cceeeeennnnneeeee]c	chr20:34237418-34237671(-)$1	253	166	185	11.1260
gggggggnnnnnggggggg	chr12:80226106-80226375(-)$1	269	165	184	12.0072
""eeeeennnnneeeee22	chr15:75215953-75216211(-)$1	258	174	193	11.2925
c[a[cccnnnnnccc]a]c	chr7:127714504-127714726(+)$1	222	39	58	12.3581
gggggggnnnnnggggggg	chr19:10795977-10796212(+)$1	235	12	31	12.0072
[ccc[bbnnnnnbb]ccc]	chr1:28862282-28862512(+)$1	230	46	65	10.6976
dd!!cccnnnnnccc]ddd	chr8:101937132-101937369(-)$1	237	116	135	11.2250
####cccnnnnnccc4444	chr3:128348706-128348936(-)$1	230	187	206	12.1659
gggggggoooooogggggg	chr1:228823306-228823566(+)$1	260	126	145	7.4258

#otherMatches

#Seq PSSM
GCACUUCCACAUGAAGCUU	chrX:152980972-152981236(-)$1	264	168	187	11.6299
CCUCUCCUGUUUGGAGGGU	chr7:6066486-6066693(-)$1	207	10	29	10.3359
UAUUAAAAGAAAUUUAGUC	chr18:43667979-43668258(-)$1	279	185	204	10.7661
ACAGGUAGAUAAUGCUUCA	chr4:57314775-57315049(+)$1	274	210	229	11.6518
GCAUCAUUGGCUAUGAUGU	chr11:118279750-118279998(+)$1	248	40	59	12.0072
CCCUAGUGAGAAAUUGGGA	chr22:20762132-20762405(+)$1	273	65	84	10.7661
CUCCGGUGAGUGGCCCCUG	chr19:59066138-59066412(-)$1	274	53	72	12.4403
CACAAGAUUGUUUCUUGAU	chr13:47356728-47357027(-)$1	299	80	99	11.6051
UUGGUCAGAUGAUGACUGG	chr1:40209395-40209687(+)$1	292	101	120	12.0072
UGUUUCUUUUCCAGGGGUG	chr3:58106927-58107219(+)$1	292	26	45	12.0072
CCCAGCGGAGUGCGCUGGG	chr2:63283907-63284176(+)$1	269	108	127	12.0364
UCAAGUUGGAUAAACUUCC	chr13:99575461-99575699(-)$1	238	82	101	11.3938
GGAAGCCAGCCAGGCUCUC	chr8:48885452-48885711(+)$1	259	147	166	10.8626
CUUCAGAAUUUGUGUGAAG	chr13:25909067-25909337(+)$1	270	211	230	11.7036
AGUGUGGCUAGACUGGGCU	chr3:33110272-33110490(-)$1	218	182	201	10.7703
GAAAAGGUAAGUCCAAGAG	chr1:38449750-38450006(-)$1	256	10	29	10.2121
GACAAAGGCUUGCUGGUCC	chr1:45480909-45481142(+)$1	233	49	68	10.4334
UUAUAUUGAGGAAAUGUAA	chr15:76225103-76225376(+)$1	273	245	264	12.0072
UGGGGCUAGGAAAGCUAAC	chr17:57759922-57760148(+)$1	226	192	211	10.5237
CAGUAAUAGUGAAUUGUGU	chr11:43349237-43349481(+)$1	244	75	94	10.6379
UUGUAAAUUCUUUUUAACU	chr11:105968041-105968327(+)$1	286	11	30	11.6181
AGAGCGAGUUCAUUGAUUC	chr17:1564803-1565012(-)$1	209	32	51	11.2708
UCACCCAAGGUGUGGGUUG	chr19:28990200-28990409(-)$1	209	104	123	10.9227
AAUUCUUCAAGAAAGUAUU	chr10:64968133-64968391(-)$1	258	34	53	11.9122
CUCCAUGAGUGACAUUGAU	chr11:62288268-62288597(-)$1	329	265	284	12.2552
CCAGUUCCGAAAGAAUUGG	chr1:65615067-65615336(+)$1	269	14	33	12.0072
GUGUAGACCCUUUCAUGUA	chr1:27107621-27107908(+)$1	287	188	207	10.2339
CUCAGACGGGAAGGUUUGA	chr19:41830272-41830556(+)$1	284	107	126	7.4258
UGAGGUGGUAUUCACCCCG	chr2:135911163-135911452(+)$1	289	89	108	11.1526
CUCCAGUUGAACACUAGUC	chr5:179155557-179155796(+)$1	239	212	231	12.4818
acauuucacguggaacugu	chr8:28917710-28917924(+)$1	214	94	113	12.4156
CUGUGACAUGUGGUCCCUG	chr1:206903930-206904134(+)$1	204	139	158	12.3581
AGGCACCCAACAGGGCUUU	chr16:29678592-29678867(+)$1	275	159	178	10.2921
GUACGACGUGUGGUCGACU	chr2:25062641-25062868(-)$1	227	64	83	10.7651
UCACCCAAGGUGUGGGUUG	chr19:28990182-28990400(-)$1	218	95	114	10.9227
CGUGGCCGUUAAGGUGAGU	chr19:10792698-10792964(+)$1	266	157	176	12.4522
AAAAACAUAAUUUGAGCAU	chr10:74767585-74767813(-)$1	228	122	141	10.1212
GCUGGACAACGAGACCAAG	chr22:36681066-36681333(-)$1	267	149	168	9.6538
AGCCAGUCGGAAAUUGGGG	chrX:153581267-153581484(-)$1	217	7	26	11.5744
GAAUGCCGUCUUGGAAGCC	chr9:127177031-127177298(-)$1	267	84	103	10.3570
GCCCUCUUCUUCAGGGGGC	chr16:2130073-2130338(+)$1	265	78	97	12.0072
CUUUUUAAAAAAUGAAACA	chr20:34237418-34237671(-)$1	253	166	185	11.1260
GUGGCUAAAUAGUGGUCAU	chr12:80226106-80226375(-)$1	269	165	184	12.0072
AAUCUCCACUCCGGAGGAA	chr15:75215953-75216211(-)$1	258	174	193	11.2925
UCUGUCCCAGGUGGAGGUG	chr7:127714504-127714726(+)$1	222	39	58	12.3581
GUAAAGGACUGGCUUUUGC	chr19:10795977-10796212(+)$1	235	12	31	12.0072
GAGAAGCCAUGUGUGUCUG	chr1:28862282-28862512(+)$1	230	46	65	10.6976
GUUCUUGAUCCCCAAUGCU	chr8:101937132-101937369(-)$1	237	116	135	11.2250
UCGUGAAUUUUUUUCUUUC	chr3:128348706-128348936(-)$1	230	187	206	12.1659
UUACCUGAAUAAGCAGGUG	chr1:228823306-228823566(+)$1	260	126	145	7.4258

#DB
(..((((.....))))...	chrX:152980972-152981236(-)$1	1	168	187	11.6299
(((((((.....)))))).	chr7:6066486-6066693(-)$1	1	10	29	10.3359
.((((((.....)))))).	chr18:43667979-43668258(-)$1	1	185	204	10.7661
..(((((.....)))))..	chr4:57314775-57315049(+)$1	1	210	229	11.6518
(((((((.....)))))))	chr11:118279750-118279998(+)$1	1	40	59	12.0072
.((((((.....)))))).	chr22:20762132-20762405(+)$1	1	65	84	10.7661
(...(((.....)))...)	chr19:59066138-59066412(-)$1	1	53	72	12.4403
(.(((((.....)))))..	chr13:47356728-47357027(-)$1	1	80	99	11.6051
(((((((.....)))))))	chr1:40209395-40209687(+)$1	1	101	120	12.0072
(((((((.....)))))))	chr3:58106927-58107219(+)$1	1	26	45	12.0072
(((((((.....)))))))	chr2:63283907-63284176(+)$1	1	108	127	12.0364
..(((((.....)))))))	chr13:99575461-99575699(-)$1	1	82	101	11.3938
(..((((.....)))))))	chr8:48885452-48885711(+)$1	1	147	166	10.8626
(((((.(.....).)))))	chr13:25909067-25909337(+)$1	1	211	230	11.7036
(((.(((.....))).)))	chr3:33110272-33110490(-)$1	1	182	201	10.7703
.....((.....))....)	chr1:38449750-38450006(-)$1	1	10	29	10.2121
(((..((.....)).))))	chr1:45480909-45481142(+)$1	1	49	68	10.4334
(((((((.....)))))))	chr15:76225103-76225376(+)$1	1	245	264	12.0072
...((((.....)))))))	chr17:57759922-57760148(+)$1	1	192	211	10.5237
((.((((.....))))..)	chr11:43349237-43349481(+)$1	1	75	94	10.6379
...((((.....))))...	chr11:105968041-105968327(+)$1	1	11	30	11.6181
(((((((.....))).)))	chr17:1564803-1565012(-)$1	1	32	51	11.2708
(((((((.....)))))..	chr19:28990200-28990409(-)$1	1	104	123	10.9227
(...(((.....)))..))	chr10:64968133-64968391(-)$1	1	34	53	11.9122
(...(((.....))).)))	chr11:62288268-62288597(-)$1	1	265	284	12.2552
(((((((.....)))))))	chr1:65615067-65615336(+)$1	1	14	33	12.0072
(((((((.....)).))))	chr1:27107621-27107908(+)$1	1	188	207	10.2339
(((((((......))))))	chr19:41830272-41830556(+)$1	1	107	126	7.4258
.(.((((.....)))))))	chr2:135911163-135911452(+)$1	1	89	108	11.1526
((..(((.....)))))))	chr5:179155557-179155796(+)$1	1	212	231	12.4818
(((.(((.....))).)))	chr8:28917710-28917924(+)$1	1	94	113	12.4156
(.(.(((.....))).).)	chr1:206903930-206904134(+)$1	1	139	158	12.3581
((((.((.....)))))))	chr16:29678592-29678867(+)$1	1	159	178	10.2921
((.((((.....)))))))	chr2:25062641-25062868(-)$1	1	64	83	10.7651
(((((((.....)))))..	chr19:28990182-28990400(-)$1	1	95	114	10.9227
(.(.(((.....))).)))	chr19:10792698-10792964(+)$1	1	157	176	12.4522
.....((.....))...))	chr10:74767585-74767813(-)$1	1	122	141	10.1212
(((((.(.....).)).))	chr22:36681066-36681333(-)$1	1	149	168	9.6538
..(((((.....))))).)	chrX:153581267-153581484(-)$1	1	7	26	11.5744
(....((.....))...))	chr9:127177031-127177298(-)$1	1	84	103	10.3570
(((((((.....)))))))	chr16:2130073-2130338(+)$1	1	78	97	12.0072
(((((((.....))))).)	chr20:34237418-34237671(-)$1	1	166	185	11.1260
(((((((.....)))))))	chr12:80226106-80226375(-)$1	1	165	184	12.0072
..(((((.....)))))..	chr15:75215953-75216211(-)$1	1	174	193	11.2925
(.(.(((.....))).).)	chr7:127714504-127714726(+)$1	1	39	58	12.3581
(((((((.....)))))))	chr19:10795977-10796212(+)$1	1	12	31	12.0072
.(((.((.....)).))).	chr1:28862282-28862512(+)$1	1	46	65	10.6976
((..(((.....))).)))	chr8:101937132-101937369(-)$1	1	116	135	11.2250
....(((.....)))....	chr3:128348706-128348936(-)$1	1	187	206	12.1659
(((((((......))))))	chr1:228823306-228823566(+)$1	1	126	145	7.4258

#PSSM
g : 0.27	c : 0.16	f : 0.12	[ : 0.08	e : 0.08	# : 0.06	$ : 0.06	b : 0.04	! : 0.04	d : 0.04	= : 0.02	" : 0.02	
g : 0.25	f : 0.12	c : 0.12	! : 0.08	# : 0.08	" : 0.08	[ : 0.08	$ : 0.06	d : 0.04	e : 0.04	= : 0.02	a : 0.02	
g : 0.23	e : 0.19	f : 0.10	! : 0.08	" : 0.06	$ : 0.06	[ : 0.06	# : 0.06	a : 0.06	c : 0.04	= : 0.02	d : 0.02	
g : 0.21	e : 0.18	d : 0.14	f : 0.10	[ : 0.10	" : 0.06	! : 0.06	$ : 0.04	# : 0.04	= : 0.02	b : 0.02	c : 0.02	
c : 0.23	g : 0.21	e : 0.16	d : 0.14	f : 0.08	$ : 0.04	[ : 0.04	= : 0.02	! : 0.02	b : 0.02	# : 0.02	
c : 0.23	g : 0.19	e : 0.16	d : 0.14	b : 0.14	f : 0.06	[ : 0.04	= : 0.02	
c : 0.23	g : 0.19	e : 0.16	d : 0.14	b : 0.14	f : 0.06	a : 0.04	= : 0.02	
n : 0.96	o : 0.04	
n : 0.96	o : 0.04	
n : 0.96	o : 0.04	
n : 0.96	o : 0.04	
n : 0.96	o : 0.04	
c : 0.23	e : 0.16	g : 0.16	d : 0.14	b : 0.14	f : 0.06	a : 0.04	o : 0.04	= : 0.02	
c : 0.23	g : 0.19	e : 0.16	d : 0.14	b : 0.14	f : 0.06	] : 0.04	= : 0.02	
c : 0.23	g : 0.21	e : 0.16	d : 0.14	f : 0.08	] : 0.06	3 : 0.04	= : 0.02	4 : 0.02	b : 0.02	
g : 0.23	e : 0.18	] : 0.16	d : 0.14	f : 0.10	3 : 0.06	4 : 0.04	= : 0.02	2 : 0.02	b : 0.02	c : 0.02	
g : 0.25	e : 0.21	f : 0.14	3 : 0.10	a : 0.08	d : 0.04	4 : 0.04	2 : 0.04	c : 0.04	= : 0.02	] : 0.02	
g : 0.30	f : 0.16	3 : 0.10	c : 0.08	2 : 0.08	] : 0.08	e : 0.06	d : 0.06	4 : 0.04	= : 0.02	b : 0.02	
g : 0.30	c : 0.14	f : 0.14	3 : 0.08	] : 0.08	e : 0.08	d : 0.06	2 : 0.06	= : 0.02	b : 0.02	4 : 0.02	

#score	560.3053254058623
#seq	50
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_transcript_m2_run2.txt

#BEAR
"eeeeeddddtttttttttttdddd333e	chr8:25272434-25272691(+)$1	257	158	187	23.9090
====####bbuuuuuuuuuuuubb333==	chr11:43515512-43515757(+)$1	245	42	71	23.9342
[gggggggwwwwwwwwwwwwwwggggggg	chr19:49464002-49464260(+)$1	258	166	195	22.9750
!!ccc!!ccctttttttttttccc22ccc	chr11:709273-709521(+)$1	248	121	150	25.1556
a:gggggggvvvvvvvvvvvvvggggggg	chr14:23530444-23530675(-)$1	231	44	73	23.0550
ff$$$$$bbuuuuuuuuuuuubb4444ff	chr2:27422496-27422756(-)$1	260	169	198	22.4632
ddda[eeeeettttttttttteeeee]a]	chr20:33514590-33514844(+)$1	254	141	170	23.4270
::ggggggguuuuuuuuuuuugggggggJ	chr3:9986427-9986684(+)$1	257	24	53	21.5754
a"""bb[ccctttttttttttccc22bb]	chr19:10802080-10802320(+)$1	240	51	80	24.0686
:::ffffffuuuuuuuuuuuuffffffcc	chr11:727379-727610(+)$1	231	91	120	20.9451
ddddddddddtttttttttttdddd]ddd	chr17:79668642-79668897(+)$1	255	127	156	22.3799
!!ccc[ddddtttttttttttdddd]ccc	chr20:62594907-62595114(-)$1	207	146	175	24.2420
(((eeeeevvvvvvvvvvvvveeeee22g	chr12:57496573-57496806(-)$1	233	131	160	21.0535
==========wwwwwwwwwwwwww=====	chr16:24834983-24835239(+)$1	256	14	43	22.2534
[bb[fffffftttttttttttffffff]b	chr9:140347378-140347596(-)$1	218	126	155	23.0725
b!!ffffffuuuuuuuuuuuuffffff22	chr10:101591742-101591988(+)$1	246	114	143	23.4842
=======[cccssssssssssccc333==	chr1:19407870-19408138(-)$1	268	62	91	18.4299
ffffff[ccctttttttttttccc]ffff	chr19:46280568-46280825(-)$1	257	167	196	24.0028
d[eeeee[bbtttttttttttbbeeeee2	chr2:220370337-220370584(+)$1	247	137	166	22.9518
[bb!!eeeeettttttttttteeeee]bb	chr9:137022993-137023272(+)$1	279	21	50	23.3236
Dccc!!cccuuuuuuuuuuuuccc22ccc	chr20:42089436-42089735(+)$1	299	63	92	23.9634
h!!ddddwwwwwwwwwwwwwwdddd22hh	chr2:27591143-27591418(-)$1	275	211	240	21.1564
[a[bb[cccuuuuuuuuuuuuccc]bb]a	chr5:135399073-135399342(+)$1	269	4	33	24.3314
[eeeee!!bbwwwwwwwwwwwwwwbb22e	chr8:22424576-22424789(+)$1	213	156	185	20.5324
$$$$$dddduuuuuuuuuuuudddd22ee	chr16:89612965-89613221(+)$1	256	195	224	23.1342
cc[gggggggtttttttttttggggggg]	chr2:241818165-241818477(+)$1	312	195	224	24.4702
f$$$$$cccuuuuuuuuuuuuccc66666	chrX:47074287-47074541(+)$1	254	63	92	21.8355
b[ffffff[ayyyyyyyyyyyyyyyya]f	chr9:35100500-35100793(-)$1	293	34	63	20.9393
(ddddbb[bbtttttttttttbb]bb333	chr19:39964780-39965078(+)$1	298	222	251	21.8803
c[bb[eeeeeuuuuuuuuuuuueeeee]b	chr9:139704190-139704487(+)$1	297	121	150	23.0295
cc[ffffffuuuuuuuuuuuuffffff33	chr9:117027601-117027803(+)$1	202	114	143	23.9399
cc[a[dddduuuuuuuuuuuudddd]a]c	chr22:38025946-38026272(+)$1	326	196	225	24.2793
iiiiiiii[awwwwwwwwwwwwwwa]iii	chr20:57600167-57600479(+)$1	312	7	36	22.1791
ggggggddddtttttttttttdddd::bb	chr10:101604015-101604224(+)$1	209	79	108	21.6101
"""gggggggtttttttttttggggggg0	chr10:135216094-135216357(+)$1	263	29	58	24.3190
gggg[eeeeeyyyyyyyyyyyyyyyyeee	chr10:99221169-99221452(-)$1	283	167	196	20.7177
ccdddd[ccctttttttttttccc]dddd	chr20:62571846-62572051(-)$1	205	2	31	23.5162
"""dddd[ayyyyyyyyyyyyyyyya]dd	chr9:139700962-139701220(+)$1	258	52	81	21.9887
[ccccccwwwwwwwwwwwwwwccc]cccb	chr1:11129513-11129818(-)$1	305	268	297	22.1627
fffffeeeeettttttttttteeeee]ff	chr20:17594466-17594697(-)$1	231	48	77	23.1901
ffffff[cccuuuuuuuuuuuucccffff	chr1:156354594-156354913(+)$1	319	118	147	23.3470
"""eeeeewwwwwwwwwwwwwweeeee33	chr9:14498-14886(-)$1	388	76	105	22.6776
g####cccvvvvvvvvvvvvvcccggggg	chr11:67051584-67051913(+)$1	329	126	155	23.8835
dddd:eeeeettttttttttteeeee::d	chr11:62459779-62460038(-)$1	259	122	151	20.1682
cc[ffffffwwwwwwwwwwwwwwffffff	chr3:52558359-52558632(-)$1	273	19	48	21.8436
eeeee[ddddtttttttttttddddeeee	chr19:39959824-39960069(+)$1	245	164	193	22.7582
!!gggggggwwwwwwwwwwwwwwgggggg	chr2:70438530-70438784(-)$1	254	176	205	23.1833
cccccc!!bbtttttttttttbb22cccI	chr3:48555553-48555820(-)$1	267	24	53	22.1679
[abb!!cccuuuuuuuuuuuuccc22bb]	chr17:46058738-46058988(+)$1	250	93	122	24.2492
[ddddyyyyyyyyyyyyyyyydddd333e	chr6:170060658-170060912(-)$1	254	9	38	21.2673
iiiiiiiivvvvvvvvvvvvviiiiiiii	chr17:1946196-1946491(+)$1	295	220	249	23.3807
::ggggggguuuuuuuuuuuuggggggg:	chr7:99695142-99695441(-)$1	299	240	269	22.0956
ccccc[cccuuuuuuuuuuuucccccc]c	chr20:33866895-33867110(-)$1	215	167	196	24.7981
:gggggggbbtttttttttttbb]ggggg	chr1:156352514-156352760(+)$1	246	198	227	23.2287

#otherMatches

#Seq PSSM
CCCAGGUGGUGCUUUGACCCUGCCAUACC	chr8:25272434-25272691(+)$1	257	158	187	23.9090
GAAAAUAACUAAGACUUAUAACAGGACUU	chr11:43515512-43515757(+)$1	245	42	71	23.9342
UGGGUGAGACUCCUCAAGCCUccucaccc	chr19:49464002-49464260(+)$1	258	166	195	22.9750
CACCCAAGACACCAUGAGCCAGUCCGGGG	chr11:709273-709521(+)$1	248	121	150	25.1556
GACUCGAUCAGAGCGUGAAUGGGAUCGGG	chr14:23530444-23530675(-)$1	231	44	73	23.0550
CCAUCUAUCUACCUGACUCCUGAGCCAGG	chr2:27422496-27422756(-)$1	260	169	198	22.4632
UGGCUUGCCUAAAACCCGCUCAGGUAUGU	chr20:33514590-33514844(+)$1	254	141	170	23.4270
GAAGGUGGAUACCAUGAGCUCUUCACCUG	chr3:9986427-9986684(+)$1	257	24	53	21.5754
GACAGUAUCCCAGCUACAACAGGACGACA	chr19:10802080-10802320(+)$1	240	51	80	24.0686
AAAGUGGGGGAACGACACACACUUCACCU	chr11:727379-727610(+)$1	231	91	120	20.9451
GAGGGGGGGCCUUCACCCCAAGCCCACCU	chr17:79668642-79668897(+)$1	255	127	156	22.3799
ACCGUCGGGCCCCCAGCUCCCGUCCAGCG	chr20:62594907-62595114(-)$1	207	146	175	24.2420
CCAUGGCAACCAAGACAACAAUGCCAAAG	chr12:57496573-57496806(-)$1	233	131	160	21.0535
GGACCCCGCAUUAUUCCACAAGCCUGUGG	chr16:24834983-24835239(+)$1	256	14	43	22.2534
AGCAGGACUCCGCCCCAACCCGAGUCCAG	chr9:140347378-140347596(-)$1	218	126	155	23.0725
CCACAGGCCGGAUUGUGAACAGGUUUGCC	chr10:101591742-101591988(+)$1	246	114	143	23.4842
UUCUUCUAGAACCCGAGCAACUUCCCGAG	chr1:19407870-19408138(-)$1	268	62	91	18.4299
UCGAAGGUGCCACCGACACAUGCAACUUC	chr19:46280568-46280825(-)$1	257	167	196	24.0028
UCGGCUGUGGUGAGCACUGGUCCCAGCCC	chr2:220370337-220370584(+)$1	247	137	166	22.9518
AUGUCGUGAUCUCAACAGCUUGUCACCCA	chr9:137022993-137023272(+)$1	279	21	50	23.3236
UCCCGAUCCCCUAAAGAAAAUGGAAAGGG	chr20:42089436-42089735(+)$1	299	63	92	23.9634
AGUCUGAGGAGUUUUAGUAAGUCAGUAUU	chr2:27591143-27591418(-)$1	275	211	240	21.1564
AGAGAGAUGUACUUUUUAAAUCAUGUUCC	chr5:135399073-135399342(+)$1	269	4	33	24.3314
GCAGGGGUUGGGAGAGACUUAGUGCAAAC	chr8:22424576-22424789(+)$1	213	156	185	20.5324
AUUCAGUGGUACGUUCUCAACCCGCAGCC	chr16:89612965-89613221(+)$1	256	195	224	23.1342
CCCGGGAGGCAGAACCAGGCAGCCUCCCU	chr2:241818165-241818477(+)$1	312	195	224	24.4702
GCCCCUUGUCCACCCCUCUCCACACCCCU	chrX:47074287-47074541(+)$1	254	63	92	21.8355
CGGUGAUCUCUGAUUUUUAUCCCCCUGUG	chr9:35100500-35100793(-)$1	293	34	63	20.9393
AGCCAGCUACCACCCUACACCGUCGCCCA	chr19:39964780-39965078(+)$1	298	222	251	21.8803
GAAGGCUUGACUAUUUGAAAUCUCAGGAC	chr9:139704190-139704487(+)$1	297	121	150	23.0295
CUCAGGCCCCCCAGGCACCAAGGGCCUCC	chr9:117027601-117027803(+)$1	202	114	143	23.9399
CAGUCGCUGCCCCCGGAAUCCCAGCAAGU	chr22:38025946-38026272(+)$1	326	196	225	24.2793
UUGGUGUUACAUUUUUAUACUUUAGCAGC	chr20:57600167-57600479(+)$1	312	7	36	22.1791
AUAAGAGGCCUCCGCCAGAUUGGCCCAGC	chr10:101604015-101604224(+)$1	209	79	108	21.6101
GGAUGUGUUUGAACUUGGCAGGAACAUAG	chr10:135216094-135216357(+)$1	263	29	58	24.3190
GCUUUGCAGGACUCCUCAACAAGCACCCU	chr10:99221169-99221452(-)$1	283	167	196	20.7177
GCGCGCCGGUGAAACCAUGGAGCCCGCGC	chr20:62571846-62572051(-)$1	205	2	31	23.5162
AGCUGGCGCACAGCAACAUGACCAAGGGC	chr9:139700962-139701220(+)$1	258	52	81	21.9887
AGACCACAAUAUAGGGGCCAAGUGAGUCC	chr1:11129513-11129818(-)$1	305	268	297	22.1627
UUUGUAAAUGAACCUGUGUCACAUUUGAU	chr20:17594466-17594697(-)$1	231	48	77	23.1901
GCUCCCAUUCCUCCAGCUGCAAGAAGGGA	chr1:156354594-156354913(+)$1	319	118	147	23.3470
GUAGGGGGCUCCAUGACACCUUCCCCCCC	chr9:14498-14886(-)$1	388	76	105	22.6776
CAACUUCCCCCUCACCAUCUCGGAGCGGU	chr11:67051584-67051913(+)$1	329	126	155	23.8835
GAUCCACAGCAAGCGCAUCCAGCUGUAUG	chr11:62459779-62460038(-)$1	259	122	151	20.1682
ACCGCGUGGACUUCACCUUCUACCCACGC	chr3:52558359-52558632(-)$1	273	19	48	21.8436
GCGUGGAUGGCAACAAGAUCACCAUCAUG	chr19:39959824-39960069(+)$1	245	164	193	22.7582
AGCUGGGCAAAGCAUCUUUUAAAUGUUCA	chr2:70438530-70438784(-)$1	254	176	205	23.1833
GGAGGGUAGCACAUCUUUCCAGCCUCCCA	chr3:48555553-48555820(-)$1	267	24	53	22.1679
CGGGCGCCCUGUGAACCUGAUGGGAACCU	chr17:46058738-46058988(+)$1	250	93	122	24.2492
UAAGAUUAUUGUGUAUUCUUUUCUUUUUU	chr6:170060658-170060912(-)$1	254	9	38	21.2673
UGCUCCUACAUCCAGCUCCUCUAGGGGCA	chr17:1946196-1946491(+)$1	295	220	249	23.3807
AAGUCAUUUAGGAGGAAAAAAGGAUGACA	chr7:99695142-99695441(-)$1	299	240	269	22.0956
CACAUUCCGCCCAAUCUGUACCGGAUGCU	chr20:33866895-33867110(-)$1	215	167	196	24.7981
ACAUGAauucauucacucauagauauuua	chr1:156352514-156352760(+)$1	246	198	227	23.2287

#DB
.(((((((((...........))))...)	chr8:25272434-25272691(+)$1	1	158	187	23.9090
((((....((............))...))	chr11:43515512-43515757(+)$1	1	42	71	23.9342
.(((((((..............)))))))	chr19:49464002-49464260(+)$1	1	166	195	22.9750
..(((..(((...........)))..)))	chr11:709273-709521(+)$1	1	121	150	25.1556
).(((((((.............)))))))	chr14:23530444-23530675(-)$1	1	44	73	23.0550
((.....((............))....))	chr2:27422496-27422756(-)$1	1	169	198	22.4632
((((.(((((...........))))).).	chr20:33514590-33514844(+)$1	1	141	170	23.4270
..(((((((............)))))))(	chr3:9986427-9986684(+)$1	1	24	53	21.5754
(...((.(((...........)))..)).	chr19:10802080-10802320(+)$1	1	51	80	24.0686
...((((((............))))))((	chr11:727379-727610(+)$1	1	91	120	20.9451
))((((((((...........)))).)))	chr17:79668642-79668897(+)$1	1	127	156	22.3799
..(((.((((...........)))).)))	chr20:62594907-62595114(-)$1	1	146	175	24.2420
...(((((.............)))))..)	chr12:57496573-57496806(-)$1	1	131	160	21.0535
((((((((((..............)))))	chr16:24834983-24835239(+)$1	1	14	43	22.2534
.((.((((((...........)))))).)	chr9:140347378-140347596(-)$1	1	126	155	23.0725
(..((((((............))))))..	chr10:101591742-101591988(+)$1	1	114	143	23.4842
(((((((.(((..........)))...))	chr1:19407870-19408138(-)$1	1	62	91	18.4299
((((((.(((...........))).))))	chr19:46280568-46280825(-)$1	1	167	196	24.0028
(.(((((.((...........))))))).	chr2:220370337-220370584(+)$1	1	137	166	22.9518
.((..(((((...........))))).))	chr9:137022993-137023272(+)$1	1	21	50	23.3236
((((..(((............)))..)))	chr20:42089436-42089735(+)$1	1	63	92	23.9634
(..((((..............))))..))	chr2:27591143-27591418(-)$1	1	211	240	21.1564
.(.((.(((............))).)).)	chr5:135399073-135399342(+)$1	1	4	33	24.3314
.(((((..((..............))..)	chr8:22424576-22424789(+)$1	1	156	185	20.5324
.....((((............))))..))	chr16:89612965-89613221(+)$1	1	195	224	23.1342
((.(((((((...........))))))).	chr2:241818165-241818477(+)$1	1	195	224	24.4702
(.....(((............))).....	chrX:47074287-47074541(+)$1	1	63	92	21.8355
(.((((((.(................).)	chr9:35100500-35100793(-)$1	1	34	63	20.9393
.((((((.((...........)).))...	chr19:39964780-39965078(+)$1	1	222	251	21.8803
(.((.(((((............))))).)	chr9:139704190-139704487(+)$1	1	121	150	23.0295
((.((((((............))))))..	chr9:117027601-117027803(+)$1	1	114	143	23.9399
((.(.((((............)))).).)	chr22:38025946-38026272(+)$1	1	196	225	24.2793
((((((((.(..............).)))	chr20:57600167-57600479(+)$1	1	7	36	22.1791
))))))((((...........))))..((	chr10:101604015-101604224(+)$1	1	79	108	21.6101
...(((((((...........))))))).	chr10:135216094-135216357(+)$1	1	29	58	24.3190
((((.(((((................)))	chr10:99221169-99221452(-)$1	1	167	196	20.7177
((((((.(((...........))).))))	chr20:62571846-62572051(-)$1	1	2	31	23.5162
...((((.(................).))	chr9:139700962-139701220(+)$1	1	52	81	21.9887
.((((((..............))).))))	chr1:11129513-11129818(-)$1	1	268	297	22.1627
((((((((((...........))))).))	chr20:17594466-17594697(-)$1	1	48	77	23.1901
((((((.(((............)))))))	chr1:156354594-156354913(+)$1	1	118	147	23.3470
...(((((..............)))))..	chr9:14498-14886(-)$1	1	76	105	22.6776
(....(((.............))))))))	chr11:67051584-67051913(+)$1	1	126	155	23.8835
)))).(((((...........)))))..(	chr11:62459779-62460038(-)$1	1	122	151	20.1682
((.((((((..............))))))	chr3:52558359-52558632(-)$1	1	19	48	21.8436
(((((.((((...........))))))))	chr19:39959824-39960069(+)$1	1	164	193	22.7582
..(((((((..............))))))	chr2:70438530-70438784(-)$1	1	176	205	23.1833
)))(((..((...........))..))))	chr3:48555553-48555820(-)$1	1	24	53	22.1679
.(((..(((............)))..)).	chr17:46058738-46058988(+)$1	1	93	122	24.2492
.((((................))))...)	chr6:170060658-170060912(-)$1	1	9	38	21.2673
((((((((.............))))))))	chr17:1946196-1946491(+)$1	1	220	249	23.3807
..(((((((............))))))).	chr7:99695142-99695441(-)$1	1	240	269	22.0956
(((((.(((............)))))).)	chr20:33866895-33867110(-)$1	1	167	196	24.7981
.(((((((((...........)).)))))	chr1:156352514-156352760(+)$1	1	198	227	23.2287

#PSSM
[ : 0.14	c : 0.14	f : 0.09	" : 0.07	d : 0.07	: : 0.07	= : 0.05	! : 0.05	g : 0.05	a : 0.03	( : 0.03	b : 0.03	i : 0.03	D : 0.01	h : 0.01	$ : 0.01	e : 0.01	
c : 0.16	! : 0.09	d : 0.09	g : 0.07	: : 0.07	f : 0.07	" : 0.07	e : 0.05	= : 0.05	[ : 0.05	b : 0.03	a : 0.03	$ : 0.03	i : 0.03	( : 0.01	# : 0.01	
g : 0.14	c : 0.11	d : 0.11	[ : 0.09	e : 0.07	" : 0.07	b : 0.07	f : 0.07	= : 0.05	$ : 0.05	! : 0.03	i : 0.03	: : 0.01	( : 0.01	# : 0.01	
g : 0.18	f : 0.14	d : 0.12	e : 0.11	c : 0.11	= : 0.05	$ : 0.05	b : 0.05	a : 0.03	i : 0.03	" : 0.01	[ : 0.01	! : 0.01	# : 0.01	
g : 0.16	f : 0.16	e : 0.11	d : 0.11	c : 0.09	[ : 0.07	$ : 0.05	! : 0.05	# : 0.03	b : 0.03	= : 0.03	i : 0.03	: : 0.01	
e : 0.20	g : 0.16	f : 0.14	d : 0.11	[ : 0.07	! : 0.05	c : 0.05	$ : 0.03	b : 0.03	= : 0.03	i : 0.03	# : 0.01	y : 0.01	
d : 0.16	e : 0.16	g : 0.14	c : 0.12	f : 0.11	[ : 0.07	! : 0.05	= : 0.03	i : 0.03	# : 0.01	$ : 0.01	b : 0.01	y : 0.01	
c : 0.20	g : 0.14	e : 0.14	d : 0.12	f : 0.11	[ : 0.07	w : 0.03	! : 0.03	i : 0.03	# : 0.01	b : 0.01	= : 0.01	y : 0.01	
c : 0.20	d : 0.12	b : 0.12	g : 0.11	e : 0.11	f : 0.09	w : 0.07	v : 0.05	[ : 0.03	= : 0.01	a : 0.01	y : 0.01	
u : 0.24	b : 0.11	w : 0.11	c : 0.11	e : 0.11	d : 0.09	v : 0.07	g : 0.03	a : 0.03	y : 0.03	= : 0.01	f : 0.01	
t : 0.37	u : 0.29	w : 0.16	v : 0.07	y : 0.07	c : 0.01	
t : 0.37	u : 0.29	w : 0.16	v : 0.07	y : 0.07	s : 0.01	
t : 0.37	u : 0.29	w : 0.16	v : 0.07	y : 0.07	s : 0.01	
t : 0.37	u : 0.29	w : 0.16	v : 0.07	y : 0.07	s : 0.01	
t : 0.37	u : 0.29	w : 0.16	v : 0.07	y : 0.07	s : 0.01	
t : 0.37	u : 0.29	w : 0.16	v : 0.07	y : 0.07	s : 0.01	
t : 0.37	u : 0.29	w : 0.16	v : 0.07	y : 0.07	s : 0.01	
t : 0.37	u : 0.29	w : 0.16	v : 0.07	y : 0.07	s : 0.01	
t : 0.37	u : 0.29	w : 0.16	v : 0.07	y : 0.07	s : 0.01	
t : 0.37	u : 0.29	w : 0.16	v : 0.07	y : 0.07	s : 0.01	
t : 0.37	u : 0.29	w : 0.16	v : 0.07	y : 0.07	s : 0.01	
c : 0.22	d : 0.16	w : 0.12	b : 0.09	e : 0.09	g : 0.07	f : 0.07	u : 0.05	y : 0.05	v : 0.01	i : 0.01	
c : 0.24	d : 0.16	e : 0.12	b : 0.11	g : 0.11	w : 0.09	f : 0.07	y : 0.05	i : 0.01	
c : 0.24	d : 0.16	e : 0.14	g : 0.12	f : 0.09	w : 0.05	y : 0.05	] : 0.03	b : 0.01	4 : 0.01	2 : 0.01	i : 0.01	
d : 0.16	g : 0.16	e : 0.14	2 : 0.09	f : 0.09	] : 0.07	y : 0.05	3 : 0.03	b : 0.03	c : 0.03	4 : 0.01	= : 0.01	6 : 0.01	a : 0.01	i : 0.01	
g : 0.16	e : 0.16	f : 0.12	2 : 0.11	3 : 0.07	] : 0.07	b : 0.05	c : 0.05	y : 0.03	4 : 0.01	= : 0.01	6 : 0.01	: : 0.01	d : 0.01	a : 0.01	i : 0.01	
g : 0.16	f : 0.12	c : 0.11	3 : 0.09	e : 0.09	] : 0.07	2 : 0.07	b : 0.05	d : 0.03	a : 0.03	i : 0.03	: : 0.03	4 : 0.01	= : 0.01	6 : 0.01	
g : 0.16	c : 0.11	] : 0.11	3 : 0.09	f : 0.09	b : 0.07	e : 0.07	= : 0.05	d : 0.05	2 : 0.05	i : 0.03	a : 0.01	h : 0.01	6 : 0.01	: : 0.01	
e : 0.11	g : 0.11	c : 0.11	f : 0.11	b : 0.09	] : 0.07	d : 0.07	= : 0.05	3 : 0.05	2 : 0.03	i : 0.03	J : 0.01	h : 0.01	a : 0.01	6 : 0.01	0 : 0.01	I : 0.01	: : 0.01	

#score	1228.9287322243263
#seq	54
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_transcript_m2_run2.txt

#BEAR
g!!dddduuuuuuuuuuuudddd22	chr17:47117265-47117504(+)$1	239	173	198	23.7420
!!a[cccvvvvvvvvvvvvvccc]a	chr4:74280730-74280948(+)$1	218	82	107	23.7738
[ffffffvvvvvvvvvvvvvfffff	chr22:43024055-43024312(-)$1	257	189	214	22.4551
ccc!!ccctttttttttttccc22c	chr2:228680946-228681175(+)$1	229	41	66	23.0335
iiii[bbvvvvvvvvvvvvvbbiii	chr8:146017276-146017556(-)$1	280	195	220	22.7359
ddd[awwwwwwwwwwwwwwadddd2	chr5:68389935-68390218(+)$1	283	88	113	21.2066
eeeddddvvvvvvvvvvvvvdddd:	chr9:116835202-116835406(-)$1	204	22	47	22.3394
:ffffffuuuuuuuuuuuuffffff	chr17:72205842-72206068(+)$1	226	6	31	21.9057
b"""cccuuuuuuuuuuuuccc333	chr4:155507342-155507648(-)$1	306	86	111	23.8751
e!!eeeeettttttttttteeeee3	chr4:155529516-155529758(-)$1	242	150	175	23.3552
eeee[bbuuuuuuuuuuuubb22ee	chr2:21246311-21246554(-)$1	243	160	185	22.4217
hhhhhhhwwwwwwwwwwwwwwhhhh	chr2:216269204-216269434(-)$1	230	56	81	19.8328
iiiiibbvvvvvvvvvvvvvbb]ii	chr10:85909840-85910086(+)$1	246	85	110	22.7171
iiibb[bbtttttttttttbb]bb2	chr1:113460318-113460567(-)$1	249	88	113	21.5987
eddddccctttttttttttccc]dd	chr17:38137066-38137315(+)$1	249	186	211	22.8939
!!eeeeeuuuuuuuuuuuueeeee]	chr15:72509715-72509942(-)$1	227	22	47	24.0986
''eeeeeuuuuuuuuuuuueeeee4	chr3:133497357-133497607(+)$1	250	27	52	22.6582
EEeeeeeuuuuuuuuuuuueeeee:	chr6:34208565-34208794(+)$1	229	135	160	21.2147
ccc[a[attttttttttta]a]ccc	chr2:132241598-132241869(-)$1	271	124	149	22.8345
cccddddvvvvvvvvvvvvvdddd]	chr15:39881987-39882321(+)$1	334	204	229	23.5426
hhhhhhhhttttttttttthhhhhh	chr6:114181201-114181452(+)$1	251	60	85	20.3798
::fffffftttttttttttffffff	chr3:148904327-148904560(-)$1	233	186	211	20.5567
eeeeddddtttttttttttdddd>>	chr6:133135611-133135851(+)$1	240	45	70	22.3895
$$$$cccuuuuuuuuuuuuccc444	chr1:8926271-8926499(-)$1	228	141	166	23.0455
c!!dddduuuuuuuuuuuudddd]c	chr15:72509649-72509882(-)$1	233	80	105	23.9155
c:ccc[bbtttttttttttbbcccJ	chr3:167813069-167813318(-)$1	249	89	114	20.6213
c[ddddvvvvvvvvvvvvvddddcc	chr16:74330645-74330958(+)$1	313	21	46	23.1272
::bbcccuuuuuuuuuuuuccc]bb	chr11:33731494-33731823(-)$1	329	8	33	21.2328
[ccc[ccctttttttttttccc]cc	chr19:51856372-51856606(-)$1	234	119	144	23.5014
gg::cccvvvvvvvvvvvvvccc::	chrX:153660511-153660750(+)$1	239	61	86	19.8312
ggggggguuuuuuuuuuuugggggg	chr11:71155800-71156030(-)$1	230	189	214	23.4758
FFFeeeeettttttttttteeeee:	chr2:21237282-21237529(-)$1	247	94	119	20.9669
!!eeeeeuuuuuuuuuuuueeeee4	chr14:94908881-94909113(-)$1	232	136	161	24.0405
c[ddddwwwwwwwwwwwwwwddddc	chr17:79479157-79479391(-)$1	234	2	27	21.9925
d!!eeeeettttttttttteeeee3	chr7:100773601-100773827(+)$1	226	37	62	23.3388
dd[dddduuuuuuuuuuuudddd]d	chr14:94844759-94844988(-)$1	229	106	131	23.2783
iiiiiiiuuuuuuuuuuuuiiiiii	chr1:64101807-64102116(+)$1	309	76	101	23.5037
cc[ddddtttttttttttddddccc	chr6:43128407-43128666(+)$1	259	4	29	22.4976
gggg[bbuuuuuuuuuuuubbgggg	chr19:18652472-18652741(-)$1	269	123	148	23.2871
eeeee[bbtttttttttttbbeeee	chr6:27792117-27792355(+)$1	238	145	170	22.4882
bbbyyyyyyyyyyyyyyyybb]bb]	chr19:58905810-58906064(+)$1	254	86	111	18.8235
:dddd[bbtttttttttttbbdddd	chr16:30080073-30080318(+)$1	245	7	32	21.6584
c:fffffftttttttttttffffff	chr14:24567384-24567632(+)$1	248	97	122	21.3262
ggggggguuuuuuuuuuuugggggg	chr16:8952104-8952354(-)$1	250	0	25	23.4758
:eeeeebbtttttttttttbb]eee	chr19:18499644-18499899(+)$1	255	204	229	21.8002
cccddddvvvvvvvvvvvvvdddd]	chr19:41859617-41859877(-)$1	260	11	36	23.5426
==[ddddtttttttttttdddd]==	chr6:43483630-43483931(-)$1	301	182	207	22.5724
dddddddvvvvvvvvvvvvvdddd]	chr12:50152372-50152612(+)$1	240	80	105	23.1793
!fffffftttttttttttffffff]	chr20:60963271-60963518(+)$1	247	72	97	21.8907
#fffffftttttttttttffffff3	chr3:186330865-186331081(+)$1	216	6	31	21.8342
e[cccyyyyyyyyyyyyyyyyccc]	chr14:95053692-95053940(+)$1	248	7	32	20.7934
!ffffffuuuuuuuuuuuuffffff	chr19:48887410-48887642(-)$1	232	135	160	22.7808
gg!!cccvvvvvvvvvvvvvccc22	chr12:49521971-49522206(-)$1	235	100	125	23.5091
EEddddvvvvvvvvvvvvvdddd:c	chr6:7569419-7569669(+)$1	250	145	170	20.3907
##eeeeeuuuuuuuuuuuueeeee5	chr20:17610372-17610704(-)$1	332	104	129	23.1019
b[eeeeeuuuuuuuuuuuueeeee]	chr14:93198968-93199213(-)$1	245	196	221	23.7571
!ccc[bbuuuuuuuuuuuubb]ccc	chr12:9253654-9253863(-)$1	209	121	146	23.3690
dddd[ccctttttttttttccc]dd	chr8:98863605-98863847(+)$1	242	149	174	22.9029

#otherMatches

#Seq PSSM
UAAGGACACCAAAACGUAAGUCUCC	chr17:47117265-47117504(+)$1	239	173	198	23.7420
GCCAAGACAUAUGAAACCACUCUAG	chr4:74280730-74280948(+)$1	218	82	107	23.7738
GGCUCAGAGAAUUGGAGAGCUUGGG	chr22:43024055-43024312(-)$1	257	189	214	22.4551
UCAUUAAACACAAAUCAAAUUUUCU	chr2:228680946-228681175(+)$1	229	41	66	23.0335
CGGGGCGGGAGGGGAAGGGACGCCC	chr8:146017276-146017556(-)$1	280	195	220	22.7359
CGGCGAGACAUGAGGAGACCCCGCG	chr5:68389935-68390218(+)$1	283	88	113	21.2066
ACUGGGCAAAAUCAUUUCAGGCCCU	chr9:116835202-116835406(-)$1	204	22	47	22.3394
GUGUGCUCUCUUUAGCUUAAGUACA	chr17:72205842-72206068(+)$1	226	6	31	21.9057
GAACUGGAAGUACUGGAAACCAAAA	chr4:155507342-155507648(-)$1	306	86	111	23.8751
UGAAAUGACUUCCAACUUUUUAUUG	chr4:155529516-155529758(-)$1	242	150	175	23.3552
AAGAUUCUGUUUGCCUUUUGAUUUC	chr2:21246311-21246554(-)$1	243	160	185	22.4217
AACUGGAUGCUCCCACUAACCUCCA	chr2:216269204-216269434(-)$1	230	56	81	19.8328
GCCCAGUGAAAAGUUUCUGAACAUG	chr10:85909840-85910086(+)$1	246	85	110	22.7171
CUUGCUACUAAACUGCUGUGUUGCU	chr1:113460318-113460567(-)$1	249	88	113	21.5987
cggcgcggACAAGGCGAAACCGCCG	chr17:38137066-38137315(+)$1	249	186	211	22.8939
UCUUUAAACUUAAGCAAACUUAAAU	chr15:72509715-72509942(-)$1	227	22	47	24.0986
UAUAGGAAGAUUUUGAAAAUCCUAC	chr3:133497357-133497607(+)$1	250	27	52	22.6582
CCAAACCUUUGCUUCACUUGGUUUA	chr6:34208565-34208794(+)$1	229	135	160	21.2147
GGAACGCAGCAACCACGAGGGAUCC	chr2:132241598-132241869(-)$1	271	124	149	22.8345
UGCGUGGCCAAUGCGACUUACCACU	chr15:39881987-39882321(+)$1	334	204	229	23.5426
UCUCCUUCAAGAAGAACAAGAAGGA	chr6:114181201-114181452(+)$1	251	60	85	20.3798
ACGGAGAGACACAGCAAACCUCUUC	chr3:148904327-148904560(-)$1	233	186	211	20.5567
GCACAGGGGACCUGAAAAACCCUUA	chr6:133135611-133135851(+)$1	240	45	70	22.3895
ACAUCCUGGAGAAUAAAGAAGGUAA	chr1:8926271-8926499(-)$1	228	141	166	23.0455
UUAAGUCUGGAAUGAAUGUGGCUCG	chr15:72509649-72509882(-)$1	233	80	105	23.9155
CGGGCGCCACUUCCCCUCCGGGCCG	chr3:167813069-167813318(-)$1	249	89	114	20.6213
CACUCUGGGAGCGGAAGAAGGAGGC	chr16:74330645-74330958(+)$1	313	21	46	23.1272
AAUGAGCUAACGUACUACUGCUGCA	chr11:33731494-33731823(-)$1	329	8	33	21.2328
CCCCCAGCAGAAGCAGAACGCUUGG	chr19:51856372-51856606(-)$1	234	119	144	23.5014
CCCUGGCUAACUCACCUUUUGCCUC	chrX:153660511-153660750(+)$1	239	61	86	19.8312
CCUUUGGAAUUGUAUGGACCCAAAG	chr11:71155800-71156030(-)$1	230	189	214	23.4758
GGGAGUCUUCCUUAUACCCAGACUU	chr2:21237282-21237529(-)$1	247	94	119	20.9669
UCCUGGGAAAAGUUGUCAACCCAGU	chr14:94908881-94909113(-)$1	232	136	161	24.0405
CAGGUCGCAAUGGAAGAAGAGAUCG	chr17:79479157-79479391(-)$1	234	2	27	21.9925
UCGGCUGGGAACCCUCAAUUCAGCA	chr7:100773601-100773827(+)$1	226	37	62	23.3388
GGUCAAGUUCAACAAACCCUUUGUC	chr14:94844759-94844988(-)$1	229	106	131	23.2783
UGAUCCUCUCUUCUCCCCAAGGAUC	chr1:64101807-64102116(+)$1	309	76	101	23.5037
GUUGUUGAAUGUUUUGGCCAACACU	chr6:43128407-43128666(+)$1	259	4	29	22.4976
CUGGAGGACAUGGGACAACCCCCGG	chr19:18652472-18652741(-)$1	269	123	148	23.2871
CUCAGCUGAAGAGUGGUAACACUGA	chr6:27792117-27792355(+)$1	238	145	170	22.4882
GCUGCCUUCCGGAACAUUAAGACCA	chr19:58905810-58906064(+)$1	254	86	111	18.8235
AGGAGUGGAAACCACAUGCCCCUCC	chr16:30080073-30080318(+)$1	245	7	32	21.6584
CAGCGGGACACGGUACAACUCCCGC	chr14:24567384-24567632(+)$1	248	97	122	21.3262
CCUGACAUUUCCCCCUCUCUGUCAG	chr16:8952104-8952354(-)$1	250	0	25	23.4758
AAACAGCUGUAUUUAUAUAAGUCUG	chr19:18499644-18499899(+)$1	255	204	229	21.8002
GGGCGGCUUCAAAACCCCCUGCCGA	chr19:41859617-41859877(-)$1	260	11	36	23.5426
CGCCUGCGCGAGGAAGAAGUAGACG	chr6:43483630-43483931(-)$1	301	182	207	22.5724
CUGUGUCUUAUAGGUAUCUUGAUGU	chr12:50152372-50152612(+)$1	240	80	105	23.1793
UGCUUUUUUUUUUUUCUUAAGGGUG	chr20:60963271-60963518(+)$1	247	72	97	21.8907
GGGUUGGUCCCGAAGCCUCCAACCA	chr3:186330865-186331081(+)$1	216	6	31	21.8342
AUGCAGCUCUUCCUCCUCUUGUGCC	chr14:95053692-95053940(+)$1	248	7	32	20.7934
UCUACCUCUAUAUCACCAAAGGUAG	chr19:48887410-48887642(-)$1	232	135	160	22.7808
GCCAUUGCCACCAUCAAAACCAAGC	chr12:49521971-49522206(-)$1	235	100	125	23.5091
CUCUUGCAAGUAAGUCAUCCAAGUU	chr6:7569419-7569669(+)$1	250	145	170	20.3907
CACAGGGAGAGUGAGGAGGCCCUGC	chr20:17610372-17610704(-)$1	332	104	129	23.1019
GGCUGGUAUAAUUAUAGGCACCAGG	chr14:93198968-93199213(-)$1	245	196	221	23.7571
ACAGUGAGUAUUUCCAUCAUCUCUG	chr12:9253654-9253863(-)$1	209	121	146	23.3690
GCAAUAGUUCUGUUAUUUCACUUUU	chr8:98863605-98863847(+)$1	242	149	174	22.9029

#DB
(..((((............))))..	chr17:47117265-47117504(+)$1	1	173	198	23.7420
..(.(((.............))).)	chr4:74280730-74280948(+)$1	1	82	107	23.7738
.((((((.............)))))	chr22:43024055-43024312(-)$1	1	189	214	22.4551
(((..(((...........)))..)	chr2:228680946-228681175(+)$1	1	41	66	23.0335
((((.((.............)))))	chr8:146017276-146017556(-)$1	1	195	220	22.7359
(((.(..............))))).	chr5:68389935-68390218(+)$1	1	88	113	21.2066
)))((((.............)))).	chr9:116835202-116835406(-)$1	1	22	47	22.3394
.((((((............))))))	chr17:72205842-72206068(+)$1	1	6	31	21.9057
(...(((............)))...	chr4:155507342-155507648(-)$1	1	86	111	23.8751
(..(((((...........))))).	chr4:155529516-155529758(-)$1	1	150	175	23.3552
((((.((............))..))	chr2:21246311-21246554(-)$1	1	160	185	22.4217
(((((((..............))))	chr2:216269204-216269434(-)$1	1	56	81	19.8328
(((((((.............)).))	chr10:85909840-85910086(+)$1	1	85	110	22.7171
(((((.((...........)).)).	chr1:113460318-113460567(-)$1	1	88	113	21.5987
)(((((((...........))).))	chr17:38137066-38137315(+)$1	1	186	211	22.8939
..(((((............))))).	chr15:72509715-72509942(-)$1	1	22	47	24.0986
..(((((............))))).	chr3:133497357-133497607(+)$1	1	27	52	22.6582
))(((((............))))).	chr6:34208565-34208794(+)$1	1	135	160	21.2147
(((.(.(...........).).)))	chr2:132241598-132241869(-)$1	1	124	149	22.8345
(((((((.............)))).	chr15:39881987-39882321(+)$1	1	204	229	23.5426
((((((((...........))))))	chr6:114181201-114181452(+)$1	1	60	85	20.3798
..((((((...........))))))	chr3:148904327-148904560(-)$1	1	186	211	20.5567
((((((((...........))))..	chr6:133135611-133135851(+)$1	1	45	70	22.3895
....(((............)))...	chr1:8926271-8926499(-)$1	1	141	166	23.0455
(..((((............)))).)	chr15:72509649-72509882(-)$1	1	80	105	23.9155
).(((.((...........))))))	chr3:167813069-167813318(-)$1	1	89	114	20.6213
(.((((.............))))))	chr16:74330645-74330958(+)$1	1	21	46	23.1272
..(((((............))).))	chr11:33731494-33731823(-)$1	1	8	33	21.2328
.(((.(((...........))).))	chr19:51856372-51856606(-)$1	1	119	144	23.5014
))..(((.............)))..	chrX:153660511-153660750(+)$1	1	61	86	19.8312
(((((((............))))))	chr11:71155800-71156030(-)$1	1	189	214	23.4758
((((((((...........))))).	chr2:21237282-21237529(-)$1	1	94	119	20.9669
..(((((............))))).	chr14:94908881-94909113(-)$1	1	136	161	24.0405
(.((((..............)))))	chr17:79479157-79479391(-)$1	1	2	27	21.9925
(..(((((...........))))).	chr7:100773601-100773827(+)$1	1	37	62	23.3388
((.((((............)))).)	chr14:94844759-94844988(-)$1	1	106	131	23.2783
(((((((............))))))	chr1:64101807-64102116(+)$1	1	76	101	23.5037
((.((((...........)))))))	chr6:43128407-43128666(+)$1	1	4	29	22.4976
((((.((............))))))	chr19:18652472-18652741(-)$1	1	123	148	23.2871
(((((.((...........))))))	chr6:27792117-27792355(+)$1	1	145	170	22.4882
(((................)).)).	chr19:58905810-58906064(+)$1	1	86	111	18.8235
.((((.((...........))))))	chr16:30080073-30080318(+)$1	1	7	32	21.6584
).((((((...........))))))	chr14:24567384-24567632(+)$1	1	97	122	21.3262
(((((((............))))))	chr16:8952104-8952354(-)$1	1	0	25	23.4758
.(((((((...........)).)))	chr19:18499644-18499899(+)$1	1	204	229	21.8002
(((((((.............)))).	chr19:41859617-41859877(-)$1	1	11	36	23.5426
((.((((...........)))).))	chr6:43483630-43483931(-)$1	1	182	207	22.5724
(((((((.............)))).	chr12:50152372-50152612(+)$1	1	80	105	23.1793
.((((((...........)))))).	chr20:60963271-60963518(+)$1	1	72	97	21.8907
.((((((...........)))))).	chr3:186330865-186331081(+)$1	1	6	31	21.8342
(.(((................))).	chr14:95053692-95053940(+)$1	1	7	32	20.7934
.((((((............))))))	chr19:48887410-48887642(-)$1	1	135	160	22.7808
((..(((.............)))..	chr12:49521971-49522206(-)$1	1	100	125	23.5091
((((((.............)))).(	chr6:7569419-7569669(+)$1	1	145	170	20.3907
..(((((............))))).	chr20:17610372-17610704(-)$1	1	104	129	23.1019
(.(((((............))))).	chr14:93198968-93199213(-)$1	1	196	221	23.7571
.(((.((............)).)))	chr12:9253654-9253863(-)$1	1	121	146	23.3690
((((.(((...........))).))	chr8:98863605-98863847(+)$1	1	149	174	22.9029

#PSSM
c : 0.17	e : 0.12	g : 0.10	! : 0.10	d : 0.08	: : 0.08	i : 0.06	b : 0.05	[ : 0.03	h : 0.03	E : 0.03	# : 0.03	' : 0.01	$ : 0.01	F : 0.01	= : 0.01	
! : 0.12	c : 0.12	d : 0.10	f : 0.08	e : 0.08	g : 0.08	i : 0.06	: : 0.06	[ : 0.06	h : 0.03	E : 0.03	" : 0.01	' : 0.01	$ : 0.01	F : 0.01	b : 0.01	= : 0.01	# : 0.01	
e : 0.18	c : 0.13	d : 0.13	f : 0.12	! : 0.08	i : 0.06	g : 0.05	[ : 0.05	h : 0.03	b : 0.03	a : 0.01	" : 0.01	$ : 0.01	: : 0.01	F : 0.01	
d : 0.25	e : 0.22	f : 0.12	c : 0.06	[ : 0.05	i : 0.05	g : 0.05	! : 0.03	h : 0.03	b : 0.03	" : 0.01	$ : 0.01	: : 0.01	y : 0.01	
d : 0.25	e : 0.18	c : 0.13	f : 0.12	[ : 0.10	a : 0.03	h : 0.03	i : 0.03	g : 0.03	! : 0.01	b : 0.01	y : 0.01	
d : 0.22	c : 0.17	e : 0.17	f : 0.12	b : 0.08	[ : 0.08	h : 0.03	g : 0.03	y : 0.03	w : 0.01	i : 0.01	
d : 0.17	c : 0.17	b : 0.17	e : 0.15	f : 0.12	w : 0.03	h : 0.03	v : 0.03	g : 0.03	y : 0.03	a : 0.01	i : 0.01	
u : 0.34	v : 0.20	b : 0.08	t : 0.08	c : 0.06	w : 0.05	e : 0.05	f : 0.03	y : 0.03	h : 0.01	d : 0.01	
t : 0.36	u : 0.34	v : 0.20	w : 0.05	y : 0.03	
t : 0.36	u : 0.34	v : 0.20	w : 0.05	y : 0.03	
t : 0.36	u : 0.34	v : 0.20	w : 0.05	y : 0.03	
t : 0.36	u : 0.34	v : 0.20	w : 0.05	y : 0.03	
t : 0.36	u : 0.34	v : 0.20	w : 0.05	y : 0.03	
t : 0.36	u : 0.34	v : 0.20	w : 0.05	y : 0.03	
t : 0.36	u : 0.34	v : 0.20	w : 0.05	y : 0.03	
t : 0.36	u : 0.34	v : 0.20	w : 0.05	y : 0.03	
t : 0.36	u : 0.34	v : 0.20	w : 0.05	y : 0.03	
t : 0.36	u : 0.34	v : 0.20	w : 0.05	y : 0.03	
u : 0.34	t : 0.27	v : 0.20	w : 0.05	d : 0.03	y : 0.03	f : 0.03	a : 0.01	
v : 0.17	e : 0.15	b : 0.15	d : 0.13	c : 0.12	f : 0.10	w : 0.03	g : 0.03	a : 0.01	] : 0.01	h : 0.01	i : 0.01	y : 0.01	
d : 0.24	b : 0.18	c : 0.17	e : 0.15	f : 0.12	g : 0.03	w : 0.01	a : 0.01	h : 0.01	i : 0.01	y : 0.01	
d : 0.25	c : 0.20	e : 0.17	f : 0.12	] : 0.08	g : 0.05	b : 0.03	h : 0.03	2 : 0.01	i : 0.01	
d : 0.22	e : 0.18	c : 0.13	f : 0.12	] : 0.10	g : 0.05	2 : 0.03	i : 0.03	h : 0.03	b : 0.03	3 : 0.01	4 : 0.01	
e : 0.20	d : 0.15	f : 0.12	c : 0.12	2 : 0.05	] : 0.05	i : 0.05	b : 0.05	g : 0.05	h : 0.03	: : 0.03	3 : 0.01	> : 0.01	4 : 0.01	= : 0.01	
c : 0.15	] : 0.13	f : 0.08	2 : 0.06	: : 0.06	3 : 0.06	d : 0.06	i : 0.05	e : 0.05	4 : 0.05	g : 0.05	h : 0.03	a : 0.01	> : 0.01	J : 0.01	b : 0.01	= : 0.01	5 : 0.01	

#score	1300.416547489721
#seq	58
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_CDS_m3_run2.txt

#BEAR
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14209-14414(-)$1	205	75	115	49.5951
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14233-14442(-)$1	209	103	143	49.5951
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14249-14462(-)$1	213	123	163	49.5951
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14222-14433(-)$1	211	94	134	49.5951
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14214-14422(-)$1	208	83	123	49.5951
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14198-14409(-)$1	211	70	110	49.5951
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14242-14449(-)$1	207	110	150	49.5951
d]eeeee]a55555eeeee4444bb22a4444ffffff22	chrM:14273-14483(-)$1	210	144	184	49.5951

#otherMatches

#Seq PSSM
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14209-14414(-)$1	205	75	115	49.5951
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14233-14442(-)$1	209	103	143	49.5951
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14249-14462(-)$1	213	123	163	49.5951
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14222-14433(-)$1	211	94	134	49.5951
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14214-14422(-)$1	208	83	123	49.5951
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14198-14409(-)$1	211	70	110	49.5951
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14242-14449(-)$1	207	110	150	49.5951
GGUGGUUGUGGUAAACUUUAAUAGUGUAGGAAGCUGAAUA	chrM:14273-14483(-)$1	210	144	184	49.5951

#DB
).))))).).....)))))....))..)....))))))..	chrM:14209-14414(-)$1	1	75	115	49.5951
).))))).).....)))))....))..)....))))))..	chrM:14233-14442(-)$1	1	103	143	49.5951
).))))).).....)))))....))..)....))))))..	chrM:14249-14462(-)$1	1	123	163	49.5951
).))))).).....)))))....))..)....))))))..	chrM:14222-14433(-)$1	1	94	134	49.5951
).))))).).....)))))....))..)....))))))..	chrM:14214-14422(-)$1	1	83	123	49.5951
).))))).).....)))))....))..)....))))))..	chrM:14198-14409(-)$1	1	70	110	49.5951
).))))).).....)))))....))..)....))))))..	chrM:14242-14449(-)$1	1	110	150	49.5951
).))))).).....)))))....))..)....))))))..	chrM:14273-14483(-)$1	1	144	184	49.5951

#PSSM
d : 1.00	
] : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
] : 1.00	
a : 1.00	
5 : 1.00	
5 : 1.00	
5 : 1.00	
5 : 1.00	
5 : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
b : 1.00	
b : 1.00	
2 : 1.00	
2 : 1.00	
a : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
4 : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
2 : 1.00	
2 : 1.00	

#score	396.7614271455999
#seq	8
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF387ZAH_TIAL1_transcript_m3_run1.txt

#BEAR
!ffffffqqqqqqqqffffff4	chr11:65272323-65272530(+)$1	207	104	126	14.5829
fff[cccqqqqqqqqccc]fff	chr18:32073397-32073712(+)$1	315	290	312	15.8495
iiiiiiiqqqqqqqqiiiiiii	chr7:26230895-26231115(-)$1	220	188	210	16.0852
ddddcccqqqqqqqqccc]ddd	chr17:15419586-15419817(-)$1	231	29	51	15.1874
!bb[cccqqqqqqqqccc]bb2	chr14:24105898-24106185(+)$1	287	117	139	15.1456
=====[aqqqqqqqqa]=====	chr8:124333175-124333439(-)$1	264	212	234	16.0608
d!!ddddqqqqqqqqdddd]dd	chr3:128889100-128889347(-)$1	247	217	239	14.8595
gggggggqqqqqqqqggggggg	chr13:30083675-30083927(-)$1	252	138	160	16.2301
eeee[bbqqqqqqqqbbeeeee	chr14:89619836-89620112(-)$1	276	226	248	14.0707
ggg!!bbqqqqqqqqbb]gggg	chr20:43033436-43033703(+)$1	267	45	67	15.2995
ccc[cccqqqqqqqqccc]ccc	chr1:70689726-70689970(+)$1	244	129	151	16.1379
eeeddddqqqqqqqqdddd]ee	chr11:504598-504908(-)$1	310	270	292	14.5730
[ccc[bbqqqqqqqqbbccc]e	chr12:69746941-69747182(+)$1	241	175	197	14.5788
fff[cccqqqqqqqqccc]fff	chr10:134569093-134569401(+)$1	308	7	29	15.8495
cc[ddddqqqqqqqqdddd]cc	chr6:159054916-159055206(+)$1	290	7	29	15.1166
gggggggqqqqqqqqggggggg	chr5:6604758-6605043(-)$1	285	192	214	16.2301
bb!!cccqqqqqqqqccc22bb	chr10:102308731-102309005(+)$1	274	170	192	14.8911
gg!!cccqqqqqqqqccc22gg	chr2:198358880-198359148(-)$1	268	87	109	16.3394
ddddcccqqqqqqqqccc]ddd	chr14:75601103-75601350(-)$1	247	37	59	15.1874
)ffffffqqqqqqqqffffff2	chr5:179224526-179224790(-)$1	264	154	176	13.8231
!!eeeeeqqqqqqqqeeeee22	chr4:108534789-108535072(-)$1	283	117	139	14.6117
dd!!cccqqqqqqqqccc22dd	chr20:39752523-39752796(+)$1	273	58	80	15.5203
ddddcccqqqqqqqqccc]ddd	chr14:39818103-39818427(+)$1	324	234	256	15.1874
$bb[cccqqqqqqqqcccbb44	chr10:102123858-102124100(+)$1	242	58	80	14.6368
=======qqqqqqqq=======	chr7:100782272-100782488(+)$1	216	63	85	16.3621
gggggggqqqqqqqqggggggg	chr20:4951236-4951487(-)$1	251	201	223	16.2301
eee[cccqqqqqqqqccc]eee	chr1:990364-990588(+)$1	224	70	92	15.8113
c[eeeeeqqqqqqqqeeeee]c	chr4:166419269-166419496(+)$1	227	102	124	14.8939
gggggggqqqqqqqqggggggg	chr16:69418293-69418556(-)$1	263	236	258	16.2301
hh[ddddqqqqqqqqdddd333	chr18:13445699-13446005(+)$1	306	260	282	15.1161
cc[ddddqqqqqqqqdddd]cc	chrX:77375209-77375452(+)$1	243	162	184	15.1166
gg[ddddqqqqqqqqdddd333	chrX:128626620-128626966(-)$1	346	262	284	15.4860
gggggggqqqqqqqqggggggg	chr19:46893630-46893906(+)$1	276	107	129	16.2301
gggggggqqqqqqqqggggggg	chr1:113162417-113162680(+)$1	263	174	196	16.2301
=====[aqqqqqqqqa]=====	chr20:62363542-62363782(+)$1	240	111	133	16.0608
bffffffqqqqqqqqffffff7	chr11:65199398-65199610(+)$1	212	33	55	13.6413
"bb[cccqqqqqqqqcccbb33	chr12:9262900-9263135(-)$1	235	116	138	15.0826
c[eeeeeqqqqqqqqeeeeecc	chr2:85823689-85824000(+)$1	311	211	233	14.8130
eee[cccqqqqqqqqccceeee	chr7:6501320-6501595(-)$1	275	124	146	15.5904
dddddddqqqqqqqqdddd]dd	chr5:52390180-52390502(+)$1	322	205	227	14.3234
!!eeeeeqqqqqqqqeeeee33	chr6:17661679-17661950(-)$1	271	183	205	15.0869
ff[bb[aqqqqqqqqa]bb]ff	chr10:102120888-102121128(+)$1	240	93	115	13.8599
iiiiiiiqqqqqqqqiiiiiii	chr3:69095300-69095569(-)$1	269	158	180	16.0852
[bb[cccqqqqqqqqccc]bb]	chr1:23632729-23632977(-)$1	248	10	32	15.2854
g!!ddddqqqqqqqqddddggg	chr10:114187114-114187424(+)$1	310	49	71	15.4162
c[eeeeeqqqqqqqqeeeee]c	chr4:166419296-166419546(+)$1	250	75	97	14.8939
d[eeeeeqqqqqqqqeeeee]d	chr11:65194823-65195039(+)$1	216	171	193	14.6723
"""cccaqqqqqqqqa]ccc44	chr7:5566803-5567039(-)$1	236	138	160	15.2597
gggggggqqqqqqqqggggggg	chr17:7010767-7011025(-)$1	258	90	112	16.2301
dd!!cccqqqqqqqqccc22dd	chr10:70515211-70515505(+)$1	294	67	89	15.5203
gggggggqqqqqqqqggggggg	chrX:128582142-128582400(-)$1	258	157	179	16.2301
=======qqqqqqqq=======	chr1:154554687-154554937(-)$1	250	222	244	16.3621
ggg!!bbqqqqqqqqbb22ggg	chr14:31390133-31390405(-)$1	272	17	39	14.9530
c!!ddddqqqqqqqqdddd444	chr3:186506141-186506385(+)$1	244	88	110	14.9964
ggggcccqqqqqqqqccc]ggg	chr2:198284723-198284986(-)$1	263	22	44	16.6307
gggggggqqqqqqqqggggggg	chr17:56077803-56078029(-)$1	226	164	186	16.2301
dddd[bbqqqqqqqqbb]dddd	chr6:31597025-31597278(+)$1	253	95	117	13.6348
hh[ddddqqqqqqqqddddhhh	chr2:241900000-241900281(-)$1	281	121	143	14.4096
gggggggqqqqqqqqggggggg	chr2:216279354-216279593(-)$1	239	149	171	16.2301
cffffffqqqqqqqqffffff:	chr12:81543727-81544036(+)$1	309	119	141	13.4764
gggggggqqqqqqqqggggggg	chr5:95232523-95232834(-)$1	311	83	105	16.2301
gggggggqqqqqqqqggggggg	chr2:191799705-191799985(+)$1	280	181	203	16.2301
ffff[bbqqqqqqqqbb22fff	chr16:28847404-28847664(+)$1	260	225	247	13.8077
hhh[cccqqqqqqqqccc]hhh	chr2:20232591-20232812(-)$1	221	127	149	15.5187

#otherMatches

#Seq PSSM
AUUCUUCAGACUAUAGAAGGAG	chr11:65272323-65272530(+)$1	207	104	126	14.5829
GGGGCGCGGACACAGGCGGCUC	chr18:32073397-32073712(+)$1	315	290	312	15.8495
GAGUUUAACAAUUUAUAAACUC	chr7:26230895-26231115(-)$1	220	188	210	16.0852
uuagaggaaaccagcccugcug	chr17:15419586-15419817(-)$1	231	29	51	15.1874
uguccuauuuuuccuuagaauu	chr14:24105898-24106185(+)$1	287	117	139	15.1456
UUUAUGUACAUAUUAAGAUAAA	chr8:124333175-124333439(-)$1	264	212	234	16.0608
UUUAACUACAAAAAAAGUUUAU	chr3:128889100-128889347(-)$1	247	217	239	14.8595
GCUAACUGCAAAUCAGGUUGGU	chr13:30083675-30083927(-)$1	252	138	160	16.2301
ugaaugcaaaccccaguuucau	chr14:89619836-89620112(-)$1	276	226	248	14.0707
gcgugacuguguggugugugug	chr20:43033436-43033703(+)$1	267	45	67	15.2995
ucauguuauauaagagacuuga	chr1:70689726-70689970(+)$1	244	129	151	16.1379
CACCCCCGACCCAGGGGGGAGU	chr11:504598-504908(-)$1	310	270	292	14.5730
CAGGAGCAAAAUAUGGCCUUUC	chr12:69746941-69747182(+)$1	241	175	197	14.5788
UAUGCAUAUGAgugagugggug	chr10:134569093-134569401(+)$1	308	7	29	15.8495
AAGAUGUGCUGAUUAACAUAUU	chr6:159054916-159055206(+)$1	290	7	29	15.1166
GAGAUGGUCCUGUCUUCAUCUC	chr5:6604758-6605043(-)$1	285	192	214	16.2301
CUUACCUUUUCCAGUGGGACAG	chr10:102308731-102309005(+)$1	274	170	192	14.8911
GAGGGGUCUGUUUUUAUUAAUC	chr2:198358880-198359148(-)$1	268	87	109	16.3394
AUAAUGCCAAAGUCAGCAUUUG	chr14:75601103-75601350(-)$1	247	37	59	15.1874
GUGACUUGUAAUAAAGGGUUAA	chr5:179224526-179224790(-)$1	264	154	176	13.8231
AUAGAAACUGCUUCCUUUCUUC	chr4:108534789-108535072(-)$1	283	117	139	14.6117
auuuuuauuucuuuuuaauuau	chr20:39752523-39752796(+)$1	273	58	80	15.5203
GCAGCCAGCCAUAAGUGGACUG	chr14:39818103-39818427(+)$1	324	234	256	15.1874
AAAUGGAAAAUUUUCUCCUUGG	chr10:102123858-102124100(+)$1	242	58	80	14.6368
AAAUCCUCUUUCUUUGGGGUUU	chr7:100782272-100782488(+)$1	216	63	85	16.3621
cucagcuucccaaguagcuggg	chr20:4951236-4951487(-)$1	251	201	223	16.2301
UCUUGCCUGAGUGUUGGCCGGA	chr1:990364-990588(+)$1	224	70	92	15.8113
AUGUAGUCCGUUAACACUACUU	chr4:166419269-166419496(+)$1	227	102	124	14.8939
UUUCCCACCCAGGCUUGGGAAG	chr16:69418293-69418556(-)$1	263	236	258	16.2301
auauugguaucucuuucaaagg	chr18:13445699-13446005(+)$1	306	260	282	15.1161
uacaGUUGCUUUCUAGGCUUUA	chrX:77375209-77375452(+)$1	243	162	184	15.1166
agaucuuuauauaguaagaaua	chrX:128626620-128626966(-)$1	346	262	284	15.4860
CCCCUUUAGGUUUGCAGAGGGG	chr19:46893630-46893906(+)$1	276	107	129	16.2301
CCAGGAAAAAGAAGCUUCUUGG	chr1:113162417-113162680(+)$1	263	174	196	16.2301
ugugugugggugagggggcaug	chr20:62363542-62363782(+)$1	240	111	133	16.0608
cuuuuggugucauauccaagaa	chr11:65199398-65199610(+)$1	212	33	55	13.6413
ugcuagcaaauacuagCUGCUU	chr12:9262900-9263135(-)$1	235	116	138	15.0826
GCAGAGCCUGUAGCAGCUCUCC	chr2:85823689-85824000(+)$1	311	211	233	14.8130
UGCUAUUUUUUGAUUAAUGCAA	chr7:6501320-6501595(-)$1	275	124	146	15.5904
AACUGUAAAAAUAAAUGCAUGU	chr5:52390180-52390502(+)$1	322	205	227	14.3234
UAUUGAAUCAGUUCUUUCAAAA	chr6:17661679-17661950(-)$1	271	183	205	15.0869
GGUCAGUCUUUGCUCAGUGUCC	chr10:102120888-102121128(+)$1	240	93	115	13.8599
CUCAAGUUUAUCACCAUUUGAG	chr3:69095300-69095569(-)$1	269	158	180	16.0852
ACAUGUCAUGAUGUCGACUUGC	chr1:23632729-23632977(-)$1	248	10	32	15.2854
AAAAUGGAUUAAAAACUAUUCU	chr10:114187114-114187424(+)$1	310	49	71	15.4162
AUGUAGUCCGUUAACACUACUU	chr4:166419296-166419546(+)$1	250	75	97	14.8939
CACUACUGACAAACGGGUGGAG	chr11:65194823-65195039(+)$1	216	171	193	14.6723
UUUGUCCCCCAACUUGAGAUGU	chr7:5566803-5567039(-)$1	236	138	160	15.2597
uaugcaugugugguggugugug	chr17:7010767-7011025(-)$1	258	90	112	16.2301
UGUGUGCACACAAUGGUAAGUA	chr10:70515211-70515505(+)$1	294	67	89	15.5203
UAUUAUGUUUAAUGCCAUAGUG	chrX:128582142-128582400(-)$1	258	157	179	16.2301
UGGAGUCUUGGUUGUGACUCCA	chr1:154554687-154554937(-)$1	250	222	244	16.3621
ACAGAAGAGAUGGAACUGGUGU	chr14:31390133-31390405(-)$1	272	17	39	14.9530
UUUGUCAUGAUUAUUUGAUUUU	chr3:186506141-186506385(+)$1	244	88	110	14.9964
UCUUUCCAGGUAGAAGGACAAG	chr2:198284723-198284986(-)$1	263	22	44	16.6307
AGAGUGUACAAUACAACAUUCU	chr17:56077803-56078029(-)$1	226	164	186	16.2301
AGUUGUUUACCCUCUAAGGGCU	chr6:31597025-31597278(+)$1	253	95	117	13.6348
GGCUGAGCCCCUCUUCUCACUC	chr2:241900000-241900281(-)$1	281	121	143	14.4096
UUUACUAUAUUUGUUUAGUGAA	chr2:216279354-216279593(-)$1	239	149	171	16.2301
CAAUUGAAUUACUACUCAGUUA	chr12:81543727-81544036(+)$1	309	119	141	13.4764
AAAAGGUAGGUGUAAGCUUUUU	chr5:95232523-95232834(-)$1	311	83	105	16.2301
UUUAUCUUAGUGUUUGGAUGAA	chr2:191799705-191799985(+)$1	280	181	203	16.2301
UGCACCUGUCUGUGAAGUAUGU	chr16:28847404-28847664(+)$1	260	225	247	13.8077
GGGUACUUGCCACAUAGUUUCC	chr2:20232591-20232812(-)$1	221	127	149	15.5187

#DB
.((((((........)))))).	chr11:65272323-65272530(+)$1	1	104	126	14.5829
(((.(((........))).)))	chr18:32073397-32073712(+)$1	1	290	312	15.8495
(((((((........)))))))	chr7:26230895-26231115(-)$1	1	188	210	16.0852
(((((((........))).)))	chr17:15419586-15419817(-)$1	1	29	51	15.1874
.((.(((........))).)).	chr14:24105898-24106185(+)$1	1	117	139	15.1456
(((((.(........).)))))	chr8:124333175-124333439(-)$1	1	212	234	16.0608
(..((((........)))).))	chr3:128889100-128889347(-)$1	1	217	239	14.8595
(((((((........)))))))	chr13:30083675-30083927(-)$1	1	138	160	16.2301
((((.((........)))))))	chr14:89619836-89620112(-)$1	1	226	248	14.0707
(((..((........)).))))	chr20:43033436-43033703(+)$1	1	45	67	15.2995
(((.(((........))).)))	chr1:70689726-70689970(+)$1	1	129	151	16.1379
(((((((........)))).))	chr11:504598-504908(-)$1	1	270	292	14.5730
.(((.((........))))).)	chr12:69746941-69747182(+)$1	1	175	197	14.5788
(((.(((........))).)))	chr10:134569093-134569401(+)$1	1	7	29	15.8495
((.((((........)))).))	chr6:159054916-159055206(+)$1	1	7	29	15.1166
(((((((........)))))))	chr5:6604758-6605043(-)$1	1	192	214	16.2301
((..(((........)))..))	chr10:102308731-102309005(+)$1	1	170	192	14.8911
((..(((........)))..))	chr2:198358880-198359148(-)$1	1	87	109	16.3394
(((((((........))).)))	chr14:75601103-75601350(-)$1	1	37	59	15.1874
.((((((........)))))).	chr5:179224526-179224790(-)$1	1	154	176	13.8231
..(((((........)))))..	chr4:108534789-108535072(-)$1	1	117	139	14.6117
((..(((........)))..))	chr20:39752523-39752796(+)$1	1	58	80	15.5203
(((((((........))).)))	chr14:39818103-39818427(+)$1	1	234	256	15.1874
.((.(((........)))))..	chr10:102123858-102124100(+)$1	1	58	80	14.6368
(((((((........)))))))	chr7:100782272-100782488(+)$1	1	63	85	16.3621
(((((((........)))))))	chr20:4951236-4951487(-)$1	1	201	223	16.2301
(((.(((........))).)))	chr1:990364-990588(+)$1	1	70	92	15.8113
(.(((((........))))).)	chr4:166419269-166419496(+)$1	1	102	124	14.8939
(((((((........)))))))	chr16:69418293-69418556(-)$1	1	236	258	16.2301
((.((((........))))...	chr18:13445699-13446005(+)$1	1	260	282	15.1161
((.((((........)))).))	chrX:77375209-77375452(+)$1	1	162	184	15.1166
((.((((........))))...	chrX:128626620-128626966(-)$1	1	262	284	15.4860
(((((((........)))))))	chr19:46893630-46893906(+)$1	1	107	129	16.2301
(((((((........)))))))	chr1:113162417-113162680(+)$1	1	174	196	16.2301
(((((.(........).)))))	chr20:62363542-62363782(+)$1	1	111	133	16.0608
(((((((........)))))).	chr11:65199398-65199610(+)$1	1	33	55	13.6413
.((.(((........)))))..	chr12:9262900-9263135(-)$1	1	116	138	15.0826
(.(((((........)))))))	chr2:85823689-85824000(+)$1	1	211	233	14.8130
(((.(((........)))))))	chr7:6501320-6501595(-)$1	1	124	146	15.5904
(((((((........)))).))	chr5:52390180-52390502(+)$1	1	205	227	14.3234
..(((((........)))))..	chr6:17661679-17661950(-)$1	1	183	205	15.0869
((.((.(........).)).))	chr10:102120888-102121128(+)$1	1	93	115	13.8599
(((((((........)))))))	chr3:69095300-69095569(-)$1	1	158	180	16.0852
.((.(((........))).)).	chr1:23632729-23632977(-)$1	1	10	32	15.2854
(..((((........)))))))	chr10:114187114-114187424(+)$1	1	49	71	15.4162
(.(((((........))))).)	chr4:166419296-166419546(+)$1	1	75	97	14.8939
(.(((((........))))).)	chr11:65194823-65195039(+)$1	1	171	193	14.6723
...((((........).)))..	chr7:5566803-5567039(-)$1	1	138	160	15.2597
(((((((........)))))))	chr17:7010767-7011025(-)$1	1	90	112	16.2301
((..(((........)))..))	chr10:70515211-70515505(+)$1	1	67	89	15.5203
(((((((........)))))))	chrX:128582142-128582400(-)$1	1	157	179	16.2301
(((((((........)))))))	chr1:154554687-154554937(-)$1	1	222	244	16.3621
(((..((........))..)))	chr14:31390133-31390405(-)$1	1	17	39	14.9530
(..((((........))))...	chr3:186506141-186506385(+)$1	1	88	110	14.9964
(((((((........))).)))	chr2:198284723-198284986(-)$1	1	22	44	16.6307
(((((((........)))))))	chr17:56077803-56078029(-)$1	1	164	186	16.2301
((((.((........)).))))	chr6:31597025-31597278(+)$1	1	95	117	13.6348
((.((((........)))))))	chr2:241900000-241900281(-)$1	1	121	143	14.4096
(((((((........)))))))	chr2:216279354-216279593(-)$1	1	149	171	16.2301
)((((((........)))))).	chr12:81543727-81544036(+)$1	1	119	141	13.4764
(((((((........)))))))	chr5:95232523-95232834(-)$1	1	83	105	16.2301
(((((((........)))))))	chr2:191799705-191799985(+)$1	1	181	203	16.2301
((((.((........))..)))	chr16:28847404-28847664(+)$1	1	225	247	13.8077
(((.(((........))).)))	chr2:20232591-20232812(-)$1	1	127	149	15.5187

#PSSM
g : 0.28	d : 0.14	c : 0.12	! : 0.06	f : 0.06	= : 0.06	e : 0.06	h : 0.04	i : 0.03	[ : 0.03	b : 0.03	" : 0.03	) : 0.01	$ : 0.01	
g : 0.26	f : 0.12	d : 0.10	b : 0.07	! : 0.07	= : 0.06	e : 0.06	c : 0.06	[ : 0.06	h : 0.04	i : 0.03	" : 0.01	
g : 0.23	e : 0.15	f : 0.10	! : 0.10	[ : 0.09	d : 0.07	b : 0.06	= : 0.06	i : 0.03	c : 0.03	" : 0.01	h : 0.01	
d : 0.21	g : 0.20	[ : 0.15	e : 0.10	! : 0.09	f : 0.07	= : 0.06	i : 0.03	c : 0.03	b : 0.01	
c : 0.29	g : 0.18	d : 0.15	e : 0.09	f : 0.06	= : 0.06	[ : 0.06	i : 0.03	! : 0.03	b : 0.01	
c : 0.29	g : 0.18	d : 0.15	b : 0.09	e : 0.09	f : 0.06	[ : 0.04	i : 0.03	= : 0.03	
c : 0.28	g : 0.18	d : 0.15	b : 0.09	e : 0.09	f : 0.06	a : 0.06	i : 0.03	= : 0.03	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.28	g : 0.18	d : 0.15	b : 0.09	e : 0.09	f : 0.06	a : 0.06	i : 0.03	= : 0.03	
c : 0.28	g : 0.18	d : 0.15	b : 0.09	e : 0.09	f : 0.06	] : 0.06	i : 0.03	= : 0.03	
c : 0.31	g : 0.18	d : 0.15	e : 0.10	f : 0.06	= : 0.06	i : 0.03	] : 0.03	2 : 0.03	b : 0.01	
g : 0.20	] : 0.17	d : 0.17	e : 0.12	2 : 0.09	f : 0.06	= : 0.06	b : 0.04	i : 0.03	c : 0.03	
g : 0.25	e : 0.14	f : 0.10	] : 0.09	d : 0.06	b : 0.06	= : 0.06	2 : 0.06	c : 0.04	i : 0.03	3 : 0.03	h : 0.03	4 : 0.01	
g : 0.26	f : 0.12	d : 0.12	= : 0.06	e : 0.06	c : 0.06	] : 0.06	3 : 0.06	b : 0.04	4 : 0.04	i : 0.03	h : 0.03	2 : 0.01	
g : 0.26	d : 0.14	c : 0.09	e : 0.07	4 : 0.06	f : 0.06	= : 0.06	3 : 0.06	2 : 0.04	i : 0.03	h : 0.03	b : 0.01	7 : 0.01	] : 0.01	: : 0.01	

#score	980.5257225500426
#seq	64
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_UTR_m2_run2.txt

#BEAR
"""ccc[a!!bb[cccbbnnnnnbb22cccbb22a]ccc	chr11:46418708-46419037(-)$1	329	81	120	13.4112
d[ccc[bb!!ddddddddoooooodddd333dddd]bb]	chr19:8550796-8551103(+)$1	307	53	92	13.0291
e"""ccc####dddd[ddddllldddd333dddd22ccc	chr14:78205030-78205273(-)$1	243	22	61	11.7540
ffffffddddccc"""ccclllccc4444ccc]dddd22	chr21:35275700-35275996(-)$1	296	140	179	12.1360
!ddddccc[ccc"""cccooooooccccccccc]dddd]	chr17:80014668-80014902(+)$1	234	118	157	14.0862
dd!!bbccc[ccc[ddddnnnnndddd]ccc]ccc]bb2	chr2:73470034-73470247(+)$1	213	110	149	15.2780
:ccc[dddd[bb!!cccooooooccc22bb333dddd]c	chr9:19116045-19116283(-)$1	238	102	141	12.8162
"bb[ggggggg####ccclllccc4444ggggggg]bbc	chr12:49666684-49666947(+)$1	263	90	129	13.3489
ccc####dddd"""ddddllldddd]dddd4444ccc]c	chr2:136740869-136741119(-)$1	250	115	154	12.3299
::ccc[a[ccc[bbddddnnnnndddd]bb]ccc]a333	chr12:49521959-49522240(-)$1	281	151	190	12.6360
hhdddd[cccccc[ddddoooooodddd4444ccc]ccc	chr4:122590769-122590979(-)$1	210	113	152	13.8610
ee####==========[ccclllccc]==========22	chr17:45673640-45673926(+)$1	286	212	251	13.9385
iiiiii[ffffff[cccoooooocccffffff4444iii	chr3:184046422-184046645(+)$1	223	56	95	13.3858
bb!!bbiiiiiiiii[annnnnaiiiiiiiii]bb]bb2	chr11:57076739-57077011(-)$1	272	71	110	13.0697
fff####bb[bb[ddddannnnna]dddd]bb]bb333f	chr14:24606885-24607099(+)$1	214	9	48	12.7639
[dddd[ggggggg[ddddnnnnndddd333gggggggdd	chr9:116822332-116822541(-)$1	209	20	59	14.5919
eeeee[ggggggg[cccnnnnncccggggggg]eeeee:	chr11:18422307-18422538(+)$1	231	1	40	11.7585
hh[a[bb!!ccc!!ddddnnnnndddd]ccc22bba]hh	chr2:73471572-73471778(+)$1	206	41	80	14.0246
ceeeee[a[dddd[cccooooooccc]dddda]eeeee]	chr16:56501038-56501305(+)$1	267	13	52	12.6588
ddbba[ccc[ccc!!bboooooobb22ccc333ccc]a]	chr3:184018078-184018302(+)$1	224	137	176	14.4037
a[bb[bb[dddd[ddddoooooodddd]dddd]bb]bba	chr19:18546318-18546578(-)$1	260	160	199	11.8825
iiieeeee[ffffffcccnnnnnccc333ffffffeeee	chr3:184046334-184046601(+)$1	267	186	225	12.4659
ddbbbb####ffffff[annnnna]ffffff22bb]bb3	chr17:45199709-45199992(-)$1	283	8	47	11.5229
a!!bb[ccc[ccc!!bb[allla]bb22ccc]cccbb22	chr5:137688353-137688613(+)$1	260	90	129	12.7132
E:dddd!!cccccc[cccnnnnnccc]ccc22ccc333d	chr5:10256041-10256313(+)$1	272	216	255	13.4103
eeee"""ccc[dddd[bbnnnnnbb]dddd22ccc]eee	chr16:74339404-74339749(+)$1	345	30	69	12.5442
====####ccc"""ddddmmmmdddd22ccc4444====	chr14:35778019-35778268(+)$1	249	33	72	13.7925
:dddd[a[ccc"""ddddnnnnndddd333cccadddd:	chr9:134342948-134343235(+)$1	287	87	126	13.6181
dd[ccc[eeeee!!ddddoooooodddd22eeeee22cc	chr9:37436716-37436990(+)$1	274	118	157	12.8238
a[ccc[ccc!!bb!!cccnnnnncccbb22cccccc]a]	chr2:74441105-74441385(+)$1	280	230	269	14.7773
fffff[a[bbccc[a[ccclllccc]a]ccc]bb]a]ff	chr10:88854288-88854552(-)$1	264	206	245	11.9976
"eeeee!!============lll============7777	chr2:171812921-171813170(+)$1	249	172	211	11.6456
ddccc[ccc!!bb[ddddmmmmdddd]bb]ccc]ccc22	chr2:74592919-74593146(-)$1	227	81	120	11.3200
=============[bboooooobb==============3	chr17:42962546-42962803(-)$1	257	204	243	13.8907
dd!!bb[ccc"""cccooooooccc333ccc]bb22ddd	chr2:73471702-73471943(+)$1	241	132	171	13.4194
=====[ffffff####cccmmmmccc333ffffff]===	chrX:20252775-20253028(-)$1	253	201	240	12.6105
gggdddda[ccc"""ddddoooooodddd333ccc]a22	chr5:151183501-151183792(+)$1	291	83	122	13.3972
gggggg"""bb[bb!!bbnnnnnbb22bb]bb4444ggg	chr5:151176686-151176995(+)$1	309	41	80	12.2224
f===========####bbmmmmbb4444===========	chr17:72764188-72764474(+)$1	286	86	125	13.1118
!dddd!!ccceeeee[bbnnnnnbbeeeee]ccc333dd	chr16:28855639-28855859(-)$1	220	72	111	12.5345
bb!!ggggggg####ccclllccc4444ggggggg22bb	chr1:19211866-19212133(-)$1	267	138	177	13.1081
f[ccc[eeeee####cccnnnnnccc4444eeeee]ccc	chr16:53967796-53968122(+)$1	326	173	212	15.3254
b[a[aeeeee!!ffffffnnnnnffffff22eeeee]a]	chr2:211319730-211320138(-)$1	408	106	145	10.9435
ddd[ccc[ccc!!addddnnnnndddd]a22ccc22ccc	chr8:11679164-11679399(+)$1	235	187	226	14.7518
[cccbb[eeeeea[cccnnnnnccc]a]eeeeebb]ccc	chr3:58139066-58139286(+)$1	220	57	96	12.6281
ddd!!ccc!!bb[ddddoooooodddd]bb22ccc22dd	chr14:39562290-39562516(-)$1	226	17	56	13.2189
[bbbb[dddd$$$$$cccnnnnnccc22dddd]bb]bb]	chr17:45676941-45677206(+)$1	265	122	161	13.0700
g$$$$$eeeee"""cccooooooccc4444eeeeegggg	chr7:94294930-94295156(+)$1	226	139	178	13.4991
!!dddd[a!!eeeee[bbnnnnnbb]eeeee22a]dddd	chr16:31202322-31202531(+)$1	209	21	60	11.6092
fff[ffffff[a!!cccooooooccc22affffff0000	chr21:44514756-44515000(-)$1	244	189	228	11.6252
ddccc[==========[abblllbb]a]==========]	chr12:6861387-6861628(-)$1	241	137	176	13.2261
eeeee$$$$$ccc[cccooooooccc]ccceeeee]ggg	chr3:49718463-49718760(+)$1	297	92	131	13.4613
ddd[ccca!!ccc[ddddoooooodddd22ccc4444a]	chr12:56553288-56553613(+)$1	325	181	220	14.6538
e!!a[dddd"""ccccccnnnnnccc]ccc22dddd]a2	chr16:75664965-75665205(-)$1	240	46	85	14.2037
[bbccc####iiiiiiiiimmmmiiiiiiiiiccc]bb]	chr1:32660932-32661181(+)$1	249	44	83	11.9170
bb"""dddd[ccc"""ccclllccc333cccdddd22bb	chr14:39502333-39502593(-)$1	260	105	144	12.9193
cc[ccc"""iiiiiiiiinnnnniiiiiiiii333cccc	chr14:35782124-35782363(+)$1	239	186	225	14.7500

#otherMatches

#Seq PSSM
AAACCGGACCUCACAGCUGACUGGGAACUGGACAUGUGG	chr11:46418708-46419037(-)$1	329	81	120	13.4112
CUGGCGUGGAGCGCAUGGGCCCUGCCAUCGAGCGCAUGG	chr19:8550796-8551103(+)$1	307	53	92	13.0291
UCAAUGUGAUAUUUCCUAUUUCAGAUAACAGAAAAGACA	chr14:78205030-78205273(-)$1	243	22	61	11.7540
GGCAGGGCUAUGCGGGAGAUUGUCUAAAAGUGUUGGUUU	chr21:35275700-35275996(-)$1	296	140	179	12.1360
CCAGCGCCGCGCCAAGGCCAUGAUGCUGCGGGCAGCUGU	chr17:80014668-80014902(+)$1	234	118	157	14.0862
CCACCUCAGUGACCUUGCUGGCUGCAGAGUUUCUGAAGC	chr2:73470034-73470247(+)$1	213	110	149	15.2780
AACUUGCUAGGCAACCCUAAAUUGGGAAGCAAGUAGCUA	chr9:19116045-19116283(-)$1	238	102	141	12.8162
AGAGAGCUGUGUGCAUGCUGAGCAAUACCACAGCUGUUG	chr12:49666684-49666947(+)$1	263	90	129	13.3489
UGGAAUAUCUUCAAUGAUACAAUCACAAGAAAAACCAGG	chr2:136740869-136741119(-)$1	250	115	154	12.3299
AACCAAGCGCAGCAUCCAGUUUGUGGAUUGGUGCCCCAC	chr12:49521959-49522240(-)$1	281	151	190	12.6360
AUGAUCAUACCCUCAUCAGAGUCAUGGUUUCCAGGAGUG	chr4:122590769-122590979(-)$1	210	113	152	13.8610
UGUCUGAUAUUGUAUUAAAUGAAGUUCAGUACAGUGUAU	chr17:45673640-45673926(+)$1	286	212	251	13.9385
CUACCUAGCGGAACUGGUAACACCCAUUCUGCAGGAAGG	chr3:184046422-184046645(+)$1	223	56	95	13.3858
GAAAGCGAGGCUGGGUCGGUGAGUUUAGCCUCAGUGUUG	chr11:57076739-57077011(-)$1	272	71	110	13.0697
UGCUCACUCUCUAGGUCCUCCCUGUGGCCCAGUGAACUG	chr14:24606885-24607099(+)$1	214	9	48	12.7639
UGACAACUGGCCGGUCUGCAAGUCAGAGGAUGGCCAGUG	chr9:116822332-116822541(-)$1	209	20	59	14.5919
UGGAACAAAUUUUUGCUGCCUAGGUAAAAUUUAUUCUAA	chr11:18422307-18422538(+)$1	231	1	40	11.7585
UCAGAUAAGAGGGAUUUGGUUUUCAAGACCUGAUGCAGA	chr2:73471572-73471778(+)$1	206	41	80	14.0246
UGUGCUACUGGGCUUCUCCUUUCAGGUGUCUGAAGUGCU	chr16:56501038-56501305(+)$1	267	13	52	12.6588
CCCCUGGGGAGAAUAAGGUAAAACUGUUUCAAACCUGGU	chr3:184018078-184018302(+)$1	224	137	176	14.4037
GAUGCUGGGCGGAACCAACACACUGGUGCUGCACAACAC	chr19:18546318-18546578(-)$1	260	160	199	11.8825
GGUGCCCAUGGGGGAGCUGUUCAGGUAAGUCCCCCUGGG	chr3:184046334-184046601(+)$1	267	186	225	12.4659
GCUGCUGUUUAUUUUUAGGUUUACAAGAAGUUAGGUCAA	chr17:45199709-45199992(-)$1	283	8	47	11.5229
ggaggcggcgggcgggagcgcgggucaggccggccccgg	chr5:137688353-137688613(+)$1	260	90	129	12.7132
UCCAAAGUGUACGUUUCAGUAGAUGAUAUGAUUACCCAU	chr5:10256041-10256313(+)$1	272	216	255	13.4103
UGUACUUGGCCUCGCUGAUCCGUUCCGUGGUCGCCCUGC	chr16:74339404-74339749(+)$1	345	30	69	12.5442
UUUUUUAUAACUACACAGAAACCUGUAUGUUUUUUAAAA	chr14:35778019-35778268(+)$1	249	33	72	13.7925
AGCAGUGAGGAAGAGGCCAGAGAGGCUGGGUCCCCUGCA	chr9:134342948-134343235(+)$1	287	87	126	13.6181
ACACCCAGGCUUGAUUUGGAUCCACAGGCAGAGCCAAGG	chr9:37436716-37436990(+)$1	274	118	157	12.8238
GAAGUCUAAAGAGCUUGGGGUAGCCACUAAUUAACUACU	chr2:74441105-74441385(+)$1	280	230	269	14.7773
GAGGACGACCCCAACUUCUUCAAGAUGGUGGAGGGCUUC	chr10:88854288-88854552(-)$1	264	206	245	11.9976
UUCAGUCUAUUUUAUGUAAUAUUAUUGCAUAGaauuuua	chr2:171812921-171813170(+)$1	249	172	211	11.6456
UCGAGAGACAGUUAUUAAGGAGUUGAAGAAGUCACUCAA	chr2:74592919-74593146(-)$1	227	81	120	11.3200
CUCUGCAGGAAUGCUGUGGGUUCAUGUUUUUGUAGAGAU	chr17:42962546-42962803(-)$1	257	204	243	13.8907
GCCCUCGAGGUAAGCCUGCUGUGGCCUUCCUAGACAGCU	chr2:73471702-73471943(+)$1	241	132	171	13.4194
AAAGUUAUUAUUAUUUUUCAGCUGAGCAGAGUAAUCAUU	chrX:20252775-20253028(-)$1	253	201	240	12.6105
CUCCCCGUGGAGGCAUGGUGCAGAAACCAGGAUUUGGAG	chr5:151183501-151183792(+)$1	291	83	122	13.3972
AGGAAUUUUUUGUGAAAUAAAUGGUGGCAGAAUGAUAUU	chr5:151176686-151176995(+)$1	309	41	80	12.2224
CUCUCUGCCAGGAGAACAGUCGUGAAGCCCUGGCAGAGG	chr17:72764188-72764474(+)$1	286	86	125	13.1118
UGGAGAAGCCUUUCCUGCUGCCUGUGGAGGCGGUGUACU	chr16:28855639-28855859(-)$1	220	72	111	12.5345
AGAUCCUCGCCAAGACCAUggugggacaggugaggugcu	chr1:19211866-19212133(-)$1	267	138	177	13.1081
UCCUUGCCUCGCUCACUGCACGCCAGAACCUGAGGAGAG	chr16:53967796-53968122(+)$1	326	173	212	15.3254
CUGUGCUUUACUUACAUCUUUAUGAUGUAUUUGGGGACC	chr2:211319730-211320138(-)$1	408	106	145	10.9435
GAUAAGCAUGUGACCUCUGAACAGGAGUGGGACAAGGUU	chr8:11679164-11679399(+)$1	235	187	226	14.7518
GGCCCACGUCACCAGCCCCUCUGGCCGUGUGACUGAGGC	chr3:58139066-58139286(+)$1	220	57	96	12.6281
AAAUUGAACUGAAAUAUGAACUGAUAUGUCUUUUCUUUU	chr14:39562290-39562516(-)$1	226	17	56	13.2189
GGUUGUCCCAAAAGAAGUUCUGUGCUGGUGGGUCAUAUG	chr17:45676941-45677206(+)$1	265	122	161	13.0700
UAAAUUUUAGGCUACUGUAUCUUCAGGCCACCUGAGGCA	chr7:94294930-94295156(+)$1	226	139	178	13.4991
GGGGCCGCGGCGGGGACCGUGGAGGCUUCCGAGGGGGCC	chr16:31202322-31202531(+)$1	209	21	60	11.6092
CCCGUGACGGACUUCAGAGAAGCCUGCUGCCGUCAGUAU	chr21:44514756-44515000(-)$1	244	189	228	11.6252
UUCAUGAGGGACGUGGAGCCUGAGGAUCCCAUGUUCCUG	chr12:6861387-6861628(-)$1	241	137	176	13.2261
CAGGGAAGGAGCAGUCAGUGUUGUGGGUGUCCCUGGAGG	chr3:49718463-49718760(+)$1	297	92	131	13.4613
CCAACGCCGAGGUGCUCAAGGUCCUGGGGAACCCCAAGA	chr12:56553288-56553613(+)$1	325	181	220	14.6538
UGUCCCAGAAACUCGCAAAAUUCUUGAUGAUAUCUGUGU	chr16:75664965-75665205(-)$1	240	46	85	14.2037
GCCUUGCAAAUGCAUUUAUACCUGUAAGUGUACAGUGGG	chr1:32660932-32661181(+)$1	249	44	83	11.9170
GUUUAUGGAUCACUUGAAGAAACUUGCUGUGUCCAGUGC	chr14:39502333-39502593(-)$1	260	105	144	12.9193
AGUGAGGAUCUUUGUAUAAUUUCUAUACAAAGCUAUUCC	chr14:35782124-35782363(+)$1	239	186	225	14.7500

#DB
...(((.(..((.(((((.....))..)))))..).)))	chr11:46418708-46419037(-)$1	1	81	120	13.4112
(.(((.((..((((((((......))))...)))).)).	chr19:8550796-8551103(+)$1	1	53	92	13.0291
(...(((....((((.((((...))))...))))..)))	chr14:78205030-78205273(-)$1	1	22	61	11.7540
(((((((((((((...(((...)))....))).))))..	chr21:35275700-35275996(-)$1	1	140	179	12.1360
.(((((((.(((...(((......))))))))).)))).	chr17:80014668-80014902(+)$1	1	118	157	14.0862
((..(((((.(((.((((.....)))).))).))).)).	chr2:73470034-73470247(+)$1	1	110	149	15.2780
.(((.((((.((..(((......)))..))...)))).)	chr9:19116045-19116283(-)$1	1	102	141	12.8162
.((.(((((((....(((...)))....))))))).)))	chr12:49666684-49666947(+)$1	1	90	129	13.3489
(((....((((...((((...)))).))))....))).)	chr2:136740869-136741119(-)$1	1	115	154	12.3299
..(((.(.(((.((((((.....)))).)).))).)...	chr12:49521959-49522240(-)$1	1	151	190	12.6360
((((((.((((((.((((......))))....))).)))	chr4:122590769-122590979(-)$1	1	113	152	13.8610
((....((((((((((.(((...))).))))))))))..	chr17:45673640-45673926(+)$1	1	212	251	13.9385
((((((.((((((.(((......)))))))))....)))	chr3:184046422-184046645(+)$1	1	56	95	13.3858
((..(((((((((((.(.....)))))))))).)).)).	chr11:57076739-57077011(-)$1	1	71	110	13.0697
(((....((.((.(((((.....).)))).)).))...)	chr14:24606885-24607099(+)$1	1	9	48	12.7639
.((((.(((((((.((((.....))))...)))))))))	chr9:116822332-116822541(-)$1	1	20	59	14.5919
(((((.(((((((.(((.....)))))))))).))))).	chr11:18422307-18422538(+)$1	1	1	40	11.7585
((.(.((..(((..((((.....)))).)))..))).))	chr2:73471572-73471778(+)$1	1	41	80	14.0246
((((((.(.((((.(((......))).))))).))))).	chr16:56501038-56501305(+)$1	1	13	52	12.6588
(((((.(((.(((..((......))..)))...))).).	chr3:184018078-184018302(+)$1	1	137	176	14.4037
(.((.((.((((.((((......)))).)))).)).)))	chr19:18546318-18546578(-)$1	1	160	199	11.8825
)))(((((.(((((((((.....)))...))))))))))	chr3:184046334-184046601(+)$1	1	186	225	12.4659
((((((....((((((.(.....).))))))..)).)).	chr17:45199709-45199992(-)$1	1	8	47	11.5229
(..((.(((.(((..((.(...).))..))).)))))..	chr5:137688353-137688613(+)$1	1	90	129	12.7132
).((((..((((((.(((.....))).)))..)))...)	chr5:10256041-10256313(+)$1	1	216	255	13.4103
((((...(((.((((.((.....)).))))..))).)))	chr16:74339404-74339749(+)$1	1	30	69	12.5442
((((....(((...((((....))))..)))....))))	chr14:35778019-35778268(+)$1	1	33	72	13.7925
.((((.(.(((...((((.....))))...)))))))).	chr9:134342948-134343235(+)$1	1	87	126	13.6181
((.(((.(((((..((((......))))..)))))..))	chr9:37436716-37436990(+)$1	1	118	157	12.8238
(.(((.(((..((..(((.....)))))..)))))).).	chr2:74441105-74441385(+)$1	1	230	269	14.7773
(((((.(.(((((.(.(((...))).).))).)).).))	chr10:88854288-88854552(-)$1	1	206	245	11.9976
.(((((..((((((((((((...))))))))))))....	chr2:171812921-171813170(+)$1	1	172	211	11.6456
(((((.(((..((.((((....)))).)).))).)))..	chr2:74592919-74593146(-)$1	1	81	120	11.3200
(((((((((((((.((......)))))))))))))))).	chr17:42962546-42962803(-)$1	1	204	243	13.8907
((..((.(((...(((......)))...))).))..)))	chr2:73471702-73471943(+)$1	1	132	171	13.4194
(((((.((((((....(((....)))...)))))).)))	chrX:20252775-20253028(-)$1	1	201	240	12.6105
((((((((.(((...((((......))))...))).)..	chr5:151183501-151183792(+)$1	1	83	122	13.3972
((((((...((.((..((.....))..)).))....)))	chr5:151176686-151176995(+)$1	1	41	80	12.2224
((((((((((((....((....))....)))))))))))	chr17:72764188-72764474(+)$1	1	86	125	13.1118
.((((..((((((((.((.....))))))).)))...))	chr16:28855639-28855859(-)$1	1	72	111	12.5345
((..(((((((....(((...)))....)))))))..))	chr1:19211866-19212133(-)$1	1	138	177	13.1081
(.(((.(((((....(((.....)))....))))).)))	chr16:53967796-53968122(+)$1	1	173	212	15.3254
(.(.((((((..((((((.....))))))..))))).).	chr2:211319730-211320138(-)$1	1	106	145	10.9435
(((.(((.(((..(((((.....)))).)..)))..)))	chr8:11679164-11679399(+)$1	1	187	226	14.7518
.(((((.((((((.(((.....))).).))))))).)))	chr3:58139066-58139286(+)$1	1	57	96	12.6281
(((..(((..((.((((......)))).))..)))..))	chr14:39562290-39562516(-)$1	1	17	56	13.2189
.((((.((((.....(((.....)))..)))).)).)).	chr17:45676941-45677206(+)$1	1	122	161	13.0700
(.....(((((...(((......)))....)))))))))	chr7:94294930-94295156(+)$1	1	139	178	13.4991
..((((.(..(((((.((.....)).)))))..).))))	chr16:31202322-31202531(+)$1	1	21	60	11.6092
(((.((((((.(..(((......)))..)))))))....	chr21:44514756-44515000(-)$1	1	189	228	11.6252
(((((.((((((((((.(((...)).).)))))))))).	chr12:6861387-6861628(-)$1	1	137	176	13.2261
(((((.....(((.(((......))).)))))))).)))	chr3:49718463-49718760(+)$1	1	92	131	13.4613
(((.((((..(((.((((......))))..)))....).	chr12:56553288-56553613(+)$1	1	181	220	14.6538
(..(.((((...((((((.....))).)))..)))).).	chr16:75664965-75665205(-)$1	1	46	85	14.2037
.(((((....(((((((((....)))))))))))).)).	chr1:32660932-32661181(+)$1	1	44	83	11.9170
((...((((.(((...(((...)))...)))))))..))	chr14:39502333-39502593(-)$1	1	105	144	12.9193
((.(((...(((((((((.....)))))))))...))))	chr14:35782124-35782363(+)$1	1	186	225	14.7500

#PSSM
d : 0.19	e : 0.10	f : 0.10	b : 0.07	[ : 0.07	" : 0.05	! : 0.05	: : 0.05	c : 0.05	a : 0.05	= : 0.05	g : 0.05	h : 0.03	i : 0.03	E : 0.01	
d : 0.24	b : 0.10	e : 0.10	[ : 0.08	f : 0.07	c : 0.07	= : 0.07	! : 0.05	" : 0.03	: : 0.03	h : 0.03	i : 0.03	g : 0.03	$ : 0.01	
d : 0.17	c : 0.15	! : 0.10	b : 0.10	e : 0.08	f : 0.07	= : 0.07	" : 0.05	[ : 0.05	i : 0.03	g : 0.03	# : 0.01	a : 0.01	$ : 0.01	
c : 0.21	d : 0.14	e : 0.10	! : 0.08	[ : 0.08	b : 0.08	= : 0.07	# : 0.05	" : 0.03	f : 0.03	a : 0.03	i : 0.01	g : 0.01	$ : 0.01	
c : 0.22	d : 0.14	b : 0.12	e : 0.08	[ : 0.07	# : 0.07	f : 0.05	g : 0.05	= : 0.05	a : 0.03	" : 0.03	i : 0.01	! : 0.01	$ : 0.01	
[ : 0.24	c : 0.15	b : 0.12	d : 0.12	# : 0.07	e : 0.07	g : 0.05	f : 0.03	= : 0.03	$ : 0.03	i : 0.01	" : 0.01	! : 0.01	
c : 0.17	[ : 0.14	d : 0.10	# : 0.08	g : 0.07	= : 0.07	e : 0.07	b : 0.05	a : 0.05	! : 0.05	" : 0.05	f : 0.03	i : 0.01	$ : 0.01	
c : 0.19	d : 0.10	e : 0.10	a : 0.08	[ : 0.08	# : 0.07	g : 0.07	= : 0.07	f : 0.05	! : 0.05	b : 0.03	" : 0.03	i : 0.01	$ : 0.01	
c : 0.24	d : 0.12	! : 0.10	= : 0.08	e : 0.08	[ : 0.07	g : 0.07	# : 0.05	f : 0.05	b : 0.03	" : 0.03	i : 0.01	$ : 0.01	
c : 0.21	! : 0.12	[ : 0.10	d : 0.08	= : 0.08	e : 0.08	g : 0.07	f : 0.07	# : 0.05	i : 0.03	b : 0.03	$ : 0.01	" : 0.01	
c : 0.29	e : 0.10	b : 0.08	= : 0.08	d : 0.07	g : 0.07	f : 0.07	i : 0.05	! : 0.05	[ : 0.03	" : 0.03	# : 0.01	$ : 0.01	
c : 0.22	b : 0.10	" : 0.10	d : 0.08	= : 0.08	f : 0.07	e : 0.07	# : 0.05	i : 0.05	[ : 0.03	g : 0.03	! : 0.03	$ : 0.01	a : 0.01	
c : 0.19	" : 0.12	! : 0.08	# : 0.08	[ : 0.07	d : 0.07	b : 0.07	= : 0.07	f : 0.07	i : 0.05	g : 0.03	e : 0.03	a : 0.01	$ : 0.01	
[ : 0.21	" : 0.14	! : 0.12	d : 0.10	# : 0.08	c : 0.07	= : 0.05	i : 0.05	f : 0.05	b : 0.03	e : 0.03	a : 0.01	$ : 0.01	
d : 0.31	c : 0.19	# : 0.08	" : 0.07	! : 0.07	= : 0.05	i : 0.05	f : 0.05	e : 0.03	[ : 0.01	a : 0.01	b : 0.01	$ : 0.01	
c : 0.33	d : 0.29	[ : 0.10	= : 0.05	b : 0.05	" : 0.03	f : 0.03	# : 0.03	i : 0.03	! : 0.01	
c : 0.36	d : 0.31	b : 0.14	[ : 0.05	o : 0.03	i : 0.03	a : 0.01	= : 0.01	f : 0.01	
d : 0.26	c : 0.24	o : 0.19	b : 0.10	n : 0.05	a : 0.05	i : 0.03	[ : 0.01	= : 0.01	f : 0.01	
n : 0.42	o : 0.28	c : 0.08	l : 0.05	m : 0.05	d : 0.03	a : 0.01	= : 0.01	b : 0.01	i : 0.01	
n : 0.42	o : 0.29	l : 0.12	m : 0.08	d : 0.01	c : 0.01	= : 0.01	b : 0.01	
n : 0.42	o : 0.29	l : 0.19	m : 0.08	
n : 0.42	o : 0.29	l : 0.14	m : 0.08	c : 0.03	d : 0.01	
n : 0.36	o : 0.26	c : 0.14	l : 0.07	d : 0.05	a : 0.03	b : 0.03	m : 0.03	
c : 0.38	d : 0.21	b : 0.15	o : 0.10	i : 0.05	a : 0.03	] : 0.01	= : 0.01	f : 0.01	
c : 0.36	d : 0.28	b : 0.14	4 : 0.05	i : 0.05	] : 0.03	= : 0.03	o : 0.01	f : 0.01	
d : 0.29	c : 0.26	] : 0.10	4 : 0.07	2 : 0.05	i : 0.05	f : 0.03	= : 0.03	3 : 0.03	g : 0.01	b : 0.01	e : 0.01	
d : 0.29	2 : 0.14	4 : 0.10	] : 0.10	3 : 0.07	f : 0.05	i : 0.05	a : 0.05	= : 0.03	e : 0.03	c : 0.01	g : 0.01	b : 0.01	
d : 0.15	] : 0.15	3 : 0.12	c : 0.10	4 : 0.10	2 : 0.08	= : 0.05	f : 0.05	i : 0.05	b : 0.05	e : 0.03	g : 0.01	
c : 0.22	d : 0.12	3 : 0.10	b : 0.08	= : 0.08	4 : 0.07	g : 0.05	f : 0.05	i : 0.05	2 : 0.05	e : 0.05	a : 0.03	
c : 0.24	3 : 0.08	d : 0.08	= : 0.08	f : 0.08	2 : 0.08	b : 0.05	g : 0.05	4 : 0.05	i : 0.05	] : 0.05	e : 0.05	
c : 0.22	2 : 0.10	e : 0.10	= : 0.08	f : 0.08	3 : 0.07	d : 0.07	g : 0.07	b : 0.05	i : 0.05	4 : 0.03	] : 0.03	
c : 0.15	2 : 0.12	e : 0.10	d : 0.08	= : 0.08	] : 0.07	g : 0.07	f : 0.07	b : 0.05	3 : 0.05	4 : 0.05	i : 0.05	a : 0.01	
c : 0.28	] : 0.12	e : 0.10	= : 0.08	2 : 0.07	d : 0.07	4 : 0.07	3 : 0.05	g : 0.05	f : 0.05	b : 0.03	
c : 0.22	b : 0.15	e : 0.12	d : 0.10	4 : 0.08	= : 0.08	g : 0.05	f : 0.05	] : 0.03	a : 0.03	2 : 0.01	3 : 0.01	
c : 0.21	d : 0.12	b : 0.12	e : 0.12	= : 0.08	4 : 0.07	2 : 0.05	g : 0.05	] : 0.05	f : 0.05	3 : 0.03	a : 0.01	
] : 0.28	2 : 0.12	d : 0.10	c : 0.08	= : 0.08	e : 0.07	a : 0.05	4 : 0.05	3 : 0.05	g : 0.03	b : 0.01	7 : 0.01	0 : 0.01	
c : 0.15	b : 0.15	d : 0.10	= : 0.10	] : 0.10	3 : 0.07	g : 0.07	e : 0.07	2 : 0.07	i : 0.01	7 : 0.01	a : 0.01	0 : 0.01	4 : 0.01	
b : 0.17	c : 0.14	d : 0.12	2 : 0.08	a : 0.08	= : 0.08	e : 0.07	3 : 0.05	g : 0.05	] : 0.03	i : 0.01	h : 0.01	f : 0.01	7 : 0.01	0 : 0.01	
c : 0.19	] : 0.17	2 : 0.14	d : 0.10	3 : 0.05	= : 0.05	g : 0.05	f : 0.03	: : 0.03	e : 0.03	b : 0.03	i : 0.01	h : 0.01	a : 0.01	7 : 0.01	0 : 0.01	

#score	745.8959559869783
#seq	57
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_transcript_m2_run1.txt

#BEAR
))gggggggtttttttttttggggggg3	chr2:21246364-21246614(-)$1	250	88	116	20.6453
ceeeee[bbwwwwwwwwwwwwwwbb]ee	chr3:186334887-186335097(+)$1	210	126	154	21.8860
+++fffffftttttttttttffffff99	chr2:21256105-21256352(-)$1	247	64	92	18.1512
:::ffffffvvvvvvvvvvvvvffffff	chr6:144814473-144814690(+)$1	217	27	55	20.0620
gggggggwwwwwwwwwwwwwwggggggg	chr1:55643535-55643838(-)$1	303	203	231	22.5047
]bbddddbbwwwwwwwwwwwwwwbb]dd	chr2:216297946-216298159(-)$1	213	81	109	20.6575
d[a!!eeeeettttttttttteeeee22	chr2:54872397-54872650(+)$1	253	56	84	21.6933
e[ffffffxxxxxxxxxxxxxxxfffff	chr10:7750932-7751176(+)$1	244	199	227	18.8056
###ccc^^^^^^^^^^^^^^^^^^^ccc	chr1:116937631-116937884(+)$1	253	30	58	15.7775
:ccc[dddduuuuuuuuuuuudddd]cc	chr7:22232883-22233174(-)$1	291	91	119	22.1256
d[eeeeexxxxxxxxxxxxxxxeeeeed	chr19:6686063-6686312(-)$1	249	58	86	18.9636
b[ddddbbyyyyyyyyyyyyyyyybb]d	chr4:83793037-83793294(-)$1	257	142	170	20.3622
eeeffffffvvvvvvvvvvvvvffffff	chr12:26834742-26835019(-)$1	277	128	156	22.4615
=========^^^^^^^^^^^^^^^^^^^	chrX:132887845-132888108(-)$1	263	191	219	15.8815
ceeeee[bbwwwwwwwwwwwwwwbb]ee	chr3:186334897-186335105(+)$1	208	116	144	21.8860
iiiiiiiiitttttttttttiiiiiiii	chr2:216274693-216274937(-)$1	244	14	42	21.2267
gggdddd[bbtttttttttttbb]dddd	chr7:100771576-100771862(+)$1	286	97	125	20.1674
iiii[bbwwwwwwwwwwwwwwbb]iiii	chr17:62500006-62500334(-)$1	328	84	112	21.6548
eeee[dddduuuuuuuuuuuudddd]ee	chr2:216229583-216229808(-)$1	225	109	137	22.7102
ffffff[ccctttttttttttccc]fff	chr3:172046640-172046913(+)$1	273	207	235	21.3185
a[ccc^^^^^^^^^^^^^^^^^^ccc]a	chrX:132730367-132730591(-)$1	224	139	167	16.2507
"""eeeeevvvvvvvvvvvvveeeeedd	chr2:216256255-216256481(-)$1	226	84	112	22.8713
c[ccc[cccwwwwwwwwwwwwwwccc]c	chr10:101567143-101567374(+)$1	231	25	53	23.0928
d!!ddddwwwwwwwwwwwwwwdddd333	chr6:4043949-4044284(+)$1	335	136	164	22.1469
===ffffffuuuuuuuuuuuuffffffH	chr6:168281077-168281298(+)$1	221	147	175	22.8206
e[ddddyyyyyyyyyyyyyyyydddd]e	chr6:7562787-7563016(+)$1	229	137	165	20.9690
iiiieeeeeuuuuuuuuuuuueeeee]i	chr11:122929576-122929785(-)$1	209	36	64	23.9984
nddddddddvvvvvvvvvvvvvdddd::	chr7:148709243-148709489(-)$1	246	202	230	19.3165
=========uuuuuuuuuuuu=======	chr10:7785947-7786161(+)$1	214	161	189	24.2947
3ccceeeeevvvvvvvvvvvvveeeee:	chr6:144832070-144832326(+)$1	256	150	178	22.0661
&&&fffffftttttttttttffffff88	chr6:144747325-144747673(+)$1	348	23	51	18.6290
c[a[eeeeewwwwwwwwwwwwwweeeee	chr1:19519871-19520128(-)$1	257	51	79	23.1126
GGGgggggggtttttttttttggggggg	chr6:114181250-114181532(+)$1	282	9	37	19.7536
d[ccc[cccuuuuuuuuuuuucccccc2	chrX:153593087-153593322(-)$1	235	123	151	23.6115
eeeee[cccuuuuuuuuuuuuccceeee	chr2:216283878-216284159(-)$1	281	248	276	23.4069
==========ttttttttttt=======	chr2:216271749-216271993(-)$1	244	199	227	22.2024
c[eeeeewwwwwwwwwwwwwweeeee]c	chrX:152953584-152953903(+)$1	319	211	239	22.9080
!!eeeeexxxxxxxxxxxxxxxeeeee]	chr9:117015063-117015310(+)$1	247	180	208	19.2433
iiiiiiiiitttttttttttiiiiiiii	chr10:101591267-101591502(+)$1	235	42	70	21.2267
ffffff[bbxxxxxxxxxxxxxxxbbff	chr2:216296534-216296756(-)$1	222	2	30	17.3963
:gggggggvvvvvvvvvvvvvggggggg	chr9:117044636-117044845(+)$1	209	70	98	22.1977
eee"""cccuuuuuuuuuuuuccc4444	chr4:184129174-184129411(+)$1	237	168	196	23.1609
c[a[eeeeewwwwwwwwwwwwwweeeee	chr1:19519928-19520152(-)$1	224	75	103	23.1126
!!a[fffffftttttttttttffffff]	chr3:133473234-133473515(+)$1	281	181	209	21.6770
ccc[fffffftttttttttttffffffc	chr11:68192529-68192774(+)$1	245	39	67	21.2392
=[ggggggguuuuuuuuuuuuggggggg	chr16:9185408-9185740(+)$1	332	260	288	24.0297
iiii[ddddssssssssssdddd]iiii	chr9:136217597-136217868(+)$1	271	238	266	14.7433
c####dddduuuuuuuuuuuudddd333	chr6:168366379-168366658(+)$1	279	208	236	23.2050
cccc[eeeeettttttttttteeeee]c	chr2:54856260-54856510(+)$1	250	50	78	21.8495

#otherMatches

#Seq PSSM
UUUUCUUCACUACAUCUUCAUGGAGAAU	chr2:21246364-21246614(-)$1	250	88	116	20.6453
CCCCUGCUGGCCCCGCUGAACGACACCA	chr3:186334887-186335097(+)$1	210	126	154	21.8860
CCAUCUCUGAGCAAAAUAUCCAGAGAGC	chr2:21256105-21256352(-)$1	247	64	92	18.1512
AUAUUGUCCAGAAACAGCAAACGGACAA	chr6:144814473-144814690(+)$1	217	27	55	20.0620
GUUUUCAGACCUUagaacacaugaggac	chr1:55643535-55643838(-)$1	303	203	231	22.5047
UGGGCGAGGGAGAAUAAGCUGUACCAUC	chr2:216297946-216298159(-)$1	213	81	109	20.6575
CCGACGAGGUAGACAGCAAGCGCCUCAC	chr2:54872397-54872650(+)$1	253	56	84	21.6933
GCAUUCAUUUCCAACUUCUCCAUGUGAG	chr10:7750932-7751176(+)$1	244	199	227	18.8056
AUAGGCUGCUGUUGUCCUUCUUACUGCC	chr1:116937631-116937884(+)$1	253	30	58	15.7775
UCUCUGACAGAUAUGUGGUGGUGUCCGG	chr7:22232883-22233174(-)$1	291	91	119	22.1256
GAGGCCACAUCCUAUGCCCUCUUGGCCC	chr19:6686063-6686312(-)$1	249	58	86	18.9636
AUGUGGGAUCUUCGAUUUGCUUCCUCUC	chr4:83793037-83793294(-)$1	257	142	170	20.3622
UAGACUUUGCCAAUGAUGCCAAUAAAGU	chr12:26834742-26835019(-)$1	277	128	156	22.4615
UGGGAAUUUCCCCAAGCUUAUUAUGACC	chrX:132887845-132888108(-)$1	263	191	219	15.8815
CCCCUGCUGGCCCCGCUGAACGACACCA	chr3:186334897-186335105(+)$1	208	116	144	21.8860
UUUGAAGAUUACUGAACAUCAUCUUCAA	chr2:216274693-216274937(-)$1	244	14	42	21.2267
GAUGCAGAUGUCUCCAGCCCUCACCUGC	chr7:100771576-100771862(+)$1	286	97	125	20.1674
CUGUUACUAAUUAUAGCAAAUGUCAUGG	chr17:62500006-62500334(-)$1	328	84	112	21.6548
CGUGUUAUGAUGAUGGGAAGACAUACCA	chr2:216229583-216229808(-)$1	225	109	137	22.7102
GAAACGACAUUGGUACCAGGUAUGACGU	chr3:172046640-172046913(+)$1	273	207	235	21.3185
UGACCCAAAUGUAAUCUAAAAAUGGUGA	chrX:132730367-132730591(-)$1	224	139	167	16.2507
GAGUUGUCAAUUUCUCCUUCAGACAAUG	chr2:216256255-216256481(-)$1	226	84	112	22.8713
CAUUCAGAGACCAAGUACAAAACCUCCG	chr10:101567143-101567374(+)$1	231	25	53	23.0928
CCAUCUGAACCAAGCAGCCCCCAGAGCA	chr6:4043949-4044284(+)$1	335	136	164	22.1469
CUUUCUACUUCACAUUUAAAUGGUAGAU	chr6:168281077-168281298(+)$1	221	147	175	22.8206
CAGUGGAGCAGCACAUUAACAGCCACCG	chr6:7562787-7563016(+)$1	229	137	165	20.9690
UCUUGUUUGGCUUACUGAUAACAGAUAA	chr11:122929576-122929785(-)$1	209	36	64	23.9984
AGGAAGGCCUUAUGACUACAACGGCCCA	chr7:148709243-148709489(-)$1	246	202	230	19.3165
UUUUGGAAAACUGGGAUUUUAUUUCCAA	chr10:7785947-7786161(+)$1	214	161	189	24.2947
GUUCGUACCUGGACUGAAGAUUGGUGCA	chr6:144832070-144832326(+)$1	256	150	178	22.0661
AGGACUUCAUUGAAGUAAGUUGAAGUAA	chr6:144747325-144747673(+)$1	348	23	51	18.6290
UGAGACCUGUGCAUCUUCUUUUUCAGGU	chr1:19519871-19520128(-)$1	257	51	79	23.1126
CUUCUCCUUCAAGAAGAACAAGAAGGAG	chr6:114181250-114181532(+)$1	282	9	37	19.7536
GGGCACGCUGGGUAAGUUGGAGGCUGCA	chrX:153593087-153593322(-)$1	235	123	151	23.6115
GGGCAGUGAUUAUUAAUGCUCUCAUGCC	chr2:216283878-216284159(-)$1	281	248	276	23.4069
GAGGGUUGUUUUGUCUCUGUCAACAGUC	chr2:216271749-216271993(-)$1	244	199	227	22.2024
CAUGAGAUUCUUCAGGCUCACUUUCAAG	chrX:152953584-152953903(+)$1	319	211	239	22.9080
AACCACUGUCAGAUAAGGGUUAGGUggc	chr9:117015063-117015310(+)$1	247	180	208	19.2433
GAUUCCUUAUCAAAAGCCAUUAGGGAGU	chr10:101591267-101591502(+)$1	235	42	70	21.2267
GGAAUAUGAGACCAAAAAAAAAAAUCUG	chr2:216296534-216296756(-)$1	222	2	30	17.3963
GGUGACAGCUUGUCUUUCCUCCUGUUGC	chr9:117044636-117044845(+)$1	209	70	98	22.1977
UGGAGACUGAAUUGUAGAUAACAGAAGA	chr4:184129174-184129411(+)$1	237	168	196	23.1609
UGAGACCUGUGCAUCUUCUUUUUCAGGU	chr1:19519928-19520152(-)$1	224	75	103	23.1126
AAGUCCUGCCACACGGGUCUAGGCAGGU	chr3:133473234-133473515(+)$1	281	181	209	21.6770
GGUACCUGUACUUCACCAACAUGCAGGA	chr11:68192529-68192774(+)$1	245	39	67	21.2392
GGCCGGGCCCGGGGGUGGGAAGGCCUGG	chr16:9185408-9185740(+)$1	332	260	288	24.0297
GUUUCCCCUCCUGCCUUUUAGGGAAGAC	chr9:136217597-136217868(+)$1	271	238	266	14.7433
cgcccggcgccccuccucccccgccuca	chr6:168366379-168366658(+)$1	279	208	236	23.2050
CCGGGCGUUCGAGGACGAGAUGAGCGGC	chr2:54856260-54856510(+)$1	250	50	78	21.8495

#DB
..(((((((...........))))))).	chr2:21246364-21246614(-)$1	1	88	116	20.6453
((((((.((..............)).))	chr3:186334887-186335097(+)$1	1	126	154	21.8860
...((((((...........))))))..	chr2:21256105-21256352(-)$1	1	64	92	18.1512
...((((((.............))))))	chr6:144814473-144814690(+)$1	1	27	55	20.0620
(((((((..............)))))))	chr1:55643535-55643838(-)$1	1	203	231	22.5047
.))((((((..............)).))	chr2:216297946-216298159(-)$1	1	81	109	20.6575
(.(..(((((...........)))))..	chr2:54872397-54872650(+)$1	1	56	84	21.6933
(.((((((...............)))))	chr10:7750932-7751176(+)$1	1	199	227	18.8056
...(((...................)))	chr1:116937631-116937884(+)$1	1	30	58	15.7775
.(((.((((............)))).))	chr7:22232883-22233174(-)$1	1	91	119	22.1256
(.(((((...............))))))	chr19:6686063-6686312(-)$1	1	58	86	18.9636
(.((((((................)).)	chr4:83793037-83793294(-)$1	1	142	170	20.3622
)))((((((.............))))))	chr12:26834742-26835019(-)$1	1	128	156	22.4615
(((((((((...................	chrX:132887845-132888108(-)$1	1	191	219	15.8815
((((((.((..............)).))	chr3:186334897-186335105(+)$1	1	116	144	21.8860
(((((((((...........))))))))	chr2:216274693-216274937(-)$1	1	14	42	21.2267
(((((((.((...........)).))))	chr7:100771576-100771862(+)$1	1	97	125	20.1674
((((.((..............)).))))	chr17:62500006-62500334(-)$1	1	84	112	21.6548
((((.((((............)))).))	chr2:216229583-216229808(-)$1	1	109	137	22.7102
((((((.(((...........))).)))	chr3:172046640-172046913(+)$1	1	207	235	21.3185
(.(((..................))).)	chrX:132730367-132730591(-)$1	1	139	167	16.2507
...(((((.............)))))))	chr2:216256255-216256481(-)$1	1	84	112	22.8713
(.(((.(((..............))).)	chr10:101567143-101567374(+)$1	1	25	53	23.0928
(..((((..............))))...	chr6:4043949-4044284(+)$1	1	136	164	22.1469
)))((((((............)))))))	chr6:168281077-168281298(+)$1	1	147	175	22.8206
(.((((................)))).)	chr6:7562787-7563016(+)$1	1	137	165	20.9690
(((((((((............))))).)	chr11:122929576-122929785(-)$1	1	36	64	23.9984
.))))((((.............))))..	chr7:148709243-148709489(-)$1	1	202	230	19.3165
(((((((((............)))))))	chr10:7785947-7786161(+)$1	1	161	189	24.2947
.)))(((((.............))))).	chr6:144832070-144832326(+)$1	1	150	178	22.0661
...((((((...........))))))..	chr6:144747325-144747673(+)$1	1	23	51	18.6290
(.(.(((((..............)))))	chr1:19519871-19520128(-)$1	1	51	79	23.1126
((((((((((...........)))))))	chr6:114181250-114181532(+)$1	1	9	37	19.7536
(.(((.(((............)))))).	chrX:153593087-153593322(-)$1	1	123	151	23.6115
(((((.(((............)))))))	chr2:216283878-216284159(-)$1	1	248	276	23.4069
((((((((((...........)))))))	chr2:216271749-216271993(-)$1	1	199	227	22.2024
(.(((((..............))))).)	chrX:152953584-152953903(+)$1	1	211	239	22.9080
..(((((...............))))).	chr9:117015063-117015310(+)$1	1	180	208	19.2433
(((((((((...........))))))))	chr10:101591267-101591502(+)$1	1	42	70	21.2267
((((((.((...............))))	chr2:216296534-216296756(-)$1	1	2	30	17.3963
.(((((((.............)))))))	chr9:117044636-117044845(+)$1	1	70	98	22.1977
(((...(((............)))....	chr4:184129174-184129411(+)$1	1	168	196	23.1609
(.(.(((((..............)))))	chr1:19519928-19520152(-)$1	1	75	103	23.1126
..(.((((((...........)))))).	chr3:133473234-133473515(+)$1	1	181	209	21.6770
(((.((((((...........)))))))	chr11:68192529-68192774(+)$1	1	39	67	21.2392
(.(((((((............)))))))	chr16:9185408-9185740(+)$1	1	260	288	24.0297
((((.((((..........)))).))))	chr9:136217597-136217868(+)$1	1	238	266	14.7433
(....((((............))))...	chr6:168366379-168366658(+)$1	1	208	236	23.2050
((((.(((((...........))))).)	chr2:54856260-54856510(+)$1	1	50	78	21.8495

#PSSM
c : 0.18	e : 0.12	= : 0.10	i : 0.10	d : 0.08	: : 0.06	g : 0.04	f : 0.04	! : 0.04	) : 0.02	+ : 0.02	] : 0.02	# : 0.02	b : 0.02	a : 0.02	" : 0.02	n : 0.02	3 : 0.02	& : 0.02	G : 0.02	
[ : 0.24	e : 0.12	i : 0.10	c : 0.08	= : 0.08	g : 0.06	! : 0.06	# : 0.04	f : 0.04	) : 0.02	+ : 0.02	: : 0.02	b : 0.02	" : 0.02	d : 0.02	& : 0.02	G : 0.02	
e : 0.18	c : 0.14	g : 0.10	i : 0.10	a : 0.08	= : 0.08	f : 0.06	d : 0.06	# : 0.04	+ : 0.02	: : 0.02	b : 0.02	" : 0.02	! : 0.02	& : 0.02	G : 0.02	
e : 0.16	f : 0.16	c : 0.14	d : 0.12	g : 0.10	i : 0.10	[ : 0.08	= : 0.06	! : 0.02	" : 0.02	# : 0.02	
e : 0.22	f : 0.20	d : 0.12	g : 0.10	[ : 0.10	c : 0.08	= : 0.06	i : 0.04	! : 0.02	" : 0.02	# : 0.02	
e : 0.24	f : 0.20	d : 0.20	g : 0.10	= : 0.06	[ : 0.06	i : 0.04	c : 0.02	b : 0.02	^ : 0.02	" : 0.02	
e : 0.20	f : 0.16	d : 0.16	g : 0.10	[ : 0.08	c : 0.08	= : 0.06	^ : 0.04	b : 0.04	i : 0.04	y : 0.02	
f : 0.16	e : 0.14	b : 0.10	d : 0.10	c : 0.10	g : 0.08	w : 0.08	= : 0.06	^ : 0.04	x : 0.04	i : 0.04	[ : 0.02	y : 0.02	
f : 0.14	e : 0.12	b : 0.10	d : 0.10	c : 0.10	w : 0.08	g : 0.06	x : 0.06	= : 0.06	^ : 0.04	y : 0.04	i : 0.04	v : 0.04	
w : 0.20	u : 0.20	v : 0.12	t : 0.10	x : 0.08	^ : 0.06	e : 0.04	y : 0.04	f : 0.04	b : 0.02	c : 0.02	g : 0.02	= : 0.02	s : 0.02	
t : 0.26	w : 0.20	u : 0.20	v : 0.12	x : 0.08	^ : 0.06	y : 0.04	s : 0.02	
t : 0.26	w : 0.20	u : 0.20	v : 0.12	x : 0.08	^ : 0.06	y : 0.04	s : 0.02	
t : 0.26	w : 0.20	u : 0.20	v : 0.12	x : 0.08	^ : 0.06	y : 0.04	s : 0.02	
t : 0.26	w : 0.20	u : 0.20	v : 0.12	x : 0.08	^ : 0.06	y : 0.04	s : 0.02	
t : 0.26	w : 0.20	u : 0.20	v : 0.12	x : 0.08	^ : 0.06	y : 0.04	s : 0.02	
t : 0.26	w : 0.20	u : 0.20	v : 0.12	x : 0.08	^ : 0.06	y : 0.04	s : 0.02	
t : 0.26	w : 0.20	u : 0.20	v : 0.12	x : 0.08	^ : 0.06	y : 0.04	s : 0.02	
t : 0.26	w : 0.20	u : 0.20	v : 0.12	x : 0.08	^ : 0.06	y : 0.04	s : 0.02	
t : 0.26	w : 0.20	u : 0.20	v : 0.12	x : 0.08	^ : 0.06	y : 0.04	s : 0.02	
t : 0.26	w : 0.20	u : 0.20	v : 0.12	x : 0.08	^ : 0.06	y : 0.04	d : 0.02	
w : 0.20	u : 0.20	t : 0.16	v : 0.12	x : 0.08	^ : 0.06	f : 0.04	y : 0.04	i : 0.04	g : 0.02	d : 0.02	
w : 0.12	g : 0.10	f : 0.10	e : 0.10	d : 0.10	v : 0.08	x : 0.08	c : 0.08	^ : 0.06	y : 0.04	i : 0.04	b : 0.04	= : 0.04	
e : 0.16	f : 0.14	d : 0.14	w : 0.12	g : 0.10	c : 0.08	^ : 0.06	x : 0.04	i : 0.04	b : 0.04	= : 0.04	y : 0.02	
e : 0.20	f : 0.16	d : 0.12	c : 0.12	g : 0.10	b : 0.06	] : 0.06	^ : 0.04	i : 0.04	= : 0.04	y : 0.02	x : 0.02	
e : 0.22	f : 0.16	d : 0.14	g : 0.10	b : 0.10	i : 0.08	c : 0.06	^ : 0.04	= : 0.04	] : 0.02	4 : 0.02	
e : 0.22	f : 0.18	g : 0.10	] : 0.10	c : 0.08	i : 0.08	d : 0.06	b : 0.04	3 : 0.04	= : 0.04	^ : 0.02	4 : 0.02	
e : 0.18	f : 0.16	] : 0.14	g : 0.10	i : 0.08	d : 0.06	c : 0.06	3 : 0.04	= : 0.04	9 : 0.02	2 : 0.02	^ : 0.02	: : 0.02	8 : 0.02	4 : 0.02	
e : 0.14	c : 0.12	f : 0.10	d : 0.10	i : 0.10	g : 0.08	3 : 0.06	2 : 0.04	: : 0.04	= : 0.04	] : 0.04	9 : 0.02	^ : 0.02	a : 0.02	H : 0.02	8 : 0.02	4 : 0.02	

#score	1033.476062705883
#seq	49
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF582WWR_RBFOX2_CDS_m3_run2.txt

#BEAR
eeeeeeevvvvvvvvvvvvveeee	chr20:257241-257552(-)$1	311	90	114	21.8086
fffffvvvvvvvvvvvvvffffff	chr10:72511149-72511382(+)$1	233	79	103	21.8749
gggggggtttttttttttgggggg	chr17:80016436-80016716(-)$1	280	235	259	22.8312
cc[cccvvvvvvvvvvvvvccc]c	chr16:72138181-72138487(+)$1	306	73	97	23.1800
+++cccuuuuuuuuuuuuccc>>>	chr9:139734719-139734982(+)$1	263	63	87	20.6380
FF:ddddtttttttttttdddd::	chr21:47611730-47612028(-)$1	298	135	159	18.3343
$$$$$bbtttttttttttbb4444	chr2:220397433-220397717(+)$1	284	131	155	20.1108
:::cccuuuuuuuuuuuucccddd	chr22:20074088-20074308(+)$1	220	24	48	20.0289
dddyyyyyyyyyyyyyyyydddd:	chr8:145140333-145140595(+)$1	262	231	255	18.6625
hhhhhwwwwwwwwwwwwwwhhhhh	chr3:52561265-52561552(-)$1	287	163	187	20.3782
ffffffuuuuuuuuuuuuffffff	chr22:38211219-38211542(+)$1	323	114	138	22.1833
ffffffuuuuuuuuuuuuffffff	chr9:139728167-139728449(+)$1	282	48	72	22.1833
ggg[cccuuuuuuuuuuuuccc]g	chr7:127975791-127976096(-)$1	305	190	214	23.2147
fffffvvvvvvvvvvvvvffffff	chr1:988678-988947(+)$1	269	162	186	21.8749
=======uuuuuuuuuuuu=====	chr16:2867269-2867549(+)$1	280	249	273	22.7843
gggggggwwwwwwwwwwwwwwggg	chr10:21823408-21823713(+)$1	305	110	134	20.8086
eeeexxxxxxxxxxxxxxxeeeee	chr3:9984900-9985200(+)$1	300	2	26	16.3588
gggggggtttttttttttgggggg	chr14:105617333-105617591(-)$1	258	167	191	22.8312
#eeeeeuuuuuuuuuuuueeeee3	chr9:139905566-139905811(-)$1	245	75	99	23.1200
gggggggvvvvvvvvvvvvvgggg	chr11:58378641-58378937(+)$1	296	171	195	22.2358
:eeeeeuuuuuuuuuuuueeeee:	chr20:2637672-2637938(+)$1	266	242	266	21.2460
gggggggtttttttttttgggggg	chr22:20073905-20074197(+)$1	292	251	275	22.8312
!ddddwwwwwwwwwwwwwwddddc	chr21:47731365-47731683(-)$1	318	133	157	21.5120
hhhhhhhttttttttttthhhhhh	chr16:4744433-4744725(+)$1	292	113	137	20.3468
:eeeeeuuuuuuuuuuuueeeee:	chr1:1019485-1019788(-)$1	303	4	28	21.2460
[eeeeeuuuuuuuuuuuueeeee]	chr10:43088753-43088992(-)$1	239	97	121	23.2292
!ddddwwwwwwwwwwwwwwdddd2	chr16:89805344-89805606(+)$1	262	33	57	21.5092
:fffffftttttttttttffffff	chr11:821481-821737(+)$1	256	153	177	20.9593
ddd!!bbvvvvvvvvvvvvvbb22	chr2:232325089-232325300(-)$1	211	59	83	20.7830
d[cccwwwwwwwwwwwwwwccc]d	chrX:153693217-153693487(+)$1	270	237	261	21.8623
fff[bbwwwwwwwwwwwwwwbb]f	chr11:290579-290809(+)$1	230	84	108	20.5730
cc[cccuuuuuuuuuuuuccc]cc	chr11:61643981-61644283(-)$1	302	66	90	23.2285
ggggg[attttttttttta]gggg	chr6:99852201-99852463(-)$1	262	206	230	23.3951
:fffffftttttttttttffffff	chr10:27040587-27040940(-)$1	353	197	221	20.9593
!ddddvvvvvvvvvvvvvdddd22	chr7:100172711-100172983(-)$1	272	35	59	22.1634
=======ttttttttttt======	chr19:58990941-58991243(-)$1	302	52	76	22.8271
ddd[ccctttttttttttcccddd	chr6:33179056-33179343(+)$1	287	139	163	22.5319
ggggggwwwwwwwwwwwwwwgggg	chr11:803521-803795(-)$1	274	146	170	22.0683
eeeeevvvvvvvvvvvvveeeee]	chr12:133295185-133295456(+)$1	271	79	103	22.7469
hhhhhhhttttttttttthhhhhh	chr9:138392524-138392902(+)$1	378	49	73	20.3468
ee[ddddtttttttttttdddd22	chr5:65364549-65364824(+)$1	275	128	152	21.9593
[ccc[bbtttttttttttbb]ccc	chr12:125270542-125270852(-)$1	310	115	139	21.8001
eeeee[attttttttttta]eeee	chr10:101379837-101380153(-)$1	316	134	158	23.0146
#eeeeeuuuuuuuuuuuueeeeeb	chrX:153667093-153667305(+)$1	212	14	38	22.7300
eeeeccctttttttttttccc444	chr8:145623232-145623496(-)$1	264	128	152	22.9225
=======uuuuuuuuuuuu=====	chr19:1111468-1111782(-)$1	314	112	136	22.7843
ddd[ccctttttttttttccc]dd	chr18:47811526-47811802(-)$1	276	56	80	22.5470
!ddddvvvvvvvvvvvvvdddd22	chr7:100172784-100173069(-)$1	285	121	145	22.1634
eeeeexxxxxxxxxxxxxxxeeee	chr19:55752324-55752588(-)$1	264	156	180	16.5470
[a[cccuuuuuuuuuuuuccc]a]	chr6:31938137-31938452(-)$1	315	14	38	23.4298
e[dddduuuuuuuuuuuudddd]e	chr1:145439405-145439657(+)$1	252	27	51	22.4509
gggggggtttttttttttgggggg	chrX:151123176-151123419(-)$1	243	177	201	22.8312

#otherMatches

#Seq PSSM
UCCUGAAAUGCAUGCAAAGGUUCA	chr20:257241-257552(-)$1	311	90	114	21.8086
CUCAGGCUCUCCCCCCAACUGAGG	chr10:72511149-72511382(+)$1	233	79	103	21.8749
GCCUGGAGGGGAAGAGAGUCUGGG	chr17:80016436-80016716(-)$1	280	235	259	22.8312
AUUGGUAAGAAUUGAAUAGGCCCA	chr16:72138181-72138487(+)$1	306	73	97	23.1800
aaagcugccaagaagaagagcaaa	chr9:139734719-139734982(+)$1	263	63	87	20.6380
UCAGCCUUCUCUUCCACCAGGCAU	chr21:47611730-47612028(-)$1	298	135	159	18.3343
AGUGAUCGUAGAUUCCAGGAAUAA	chr2:220397433-220397717(+)$1	284	131	155	20.1108
GGAGCUAGAUGAAGAAGGAGCAGG	chr22:20074088-20074308(+)$1	220	24	48	20.0289
CCCUCACCAACUUCUCACUGGGCU	chr8:145140333-145140595(+)$1	262	231	255	18.6625
CUUUCAGAAAACUCGAUGAGAAGG	chr3:52561265-52561552(-)$1	287	163	187	20.3782
GGCUGGGAAACGAGGAGGCCAGUC	chr22:38211219-38211542(+)$1	323	114	138	22.1833
GGUGUCAGAAGAAGUGAGGAUGCC	chr9:139728167-139728449(+)$1	282	48	72	22.1833
GAAGAGGUAAGCAGCUCAUCCUGU	chr7:127975791-127976096(-)$1	305	190	214	23.2147
CCCCGAAACUCUGGAUUCCGGGGC	chr1:988678-988947(+)$1	269	162	186	21.8749
GUGAGGGGGUAGAGGGGGGCCUUU	chr16:2867269-2867549(+)$1	280	249	273	22.7843
GAAGCACUAAUCGGCUUGCAUGUG	chr10:21823408-21823713(+)$1	305	110	134	20.8086
CAGCAUGAAUGGUGAAGAGGCUGG	chr3:9984900-9985200(+)$1	300	2	26	16.3588
GGGAAGCCAUGCCUUAACGCUUUU	chr14:105617333-105617591(-)$1	258	167	191	22.8312
UGAAAAGCUGCUUCCUCAUUUUCC	chr9:139905566-139905811(-)$1	245	75	99	23.1200
UAAUUGUCUCGUUUCUCUUUACAA	chr11:58378641-58378937(+)$1	296	171	195	22.2358
ACAGCAGAACAAAGGAUAUGCUGC	chr20:2637672-2637938(+)$1	266	242	266	21.2460
UCGUUCAGAGAGACAGAGUGGAUG	chr22:20073905-20074197(+)$1	292	251	275	22.8312
ggguggUAGAUACUGGAGACACUU	chr21:47731365-47731683(-)$1	318	133	157	21.5120
GCUUGGGGAGUUGGGAAACUUGAG	chr16:4744433-4744725(+)$1	292	113	137	20.3468
UGCCUUUCUCUCCUUUUCAAGGCU	chr1:1019485-1019788(-)$1	303	4	28	21.2460
AUGUGGGAAAACUUUCUACCACAA	chr10:43088753-43088992(-)$1	239	97	121	23.2292
UUGCCCUAGAGAGAAAACAGGCAA	chr16:89805344-89805606(+)$1	262	33	57	21.5092
UGGUGCCAAGUUCAUUGAGGUAUC	chr11:821481-821737(+)$1	256	153	177	20.9593
GGAAAUGGCCAAACAGAAAGCAGC	chr2:232325089-232325300(-)$1	211	59	83	20.7830
AGUCGGGCCAGAAGAACUAUGAGU	chrX:153693217-153693487(+)$1	270	237	261	21.8623
CCACGCUCUCACAGGUACCUGUAU	chr11:290579-290809(+)$1	230	84	108	20.5730
cugguggaaucacauaaacacaag	chr11:61643981-61644283(-)$1	302	66	90	23.2285
UUUCCUCUAAAAUGUAUUGUGGAA	chr6:99852201-99852463(-)$1	262	206	230	23.3951
UGAUUCAAAUCAAUCAUAUGAAUC	chr10:27040587-27040940(-)$1	353	197	221	20.9593
ACCUGCUCUCCUCUCCCCCAGGCU	chr7:100172711-100172983(-)$1	272	35	59	22.1634
UAGGGCUGGUAGCACAGAGGCCCU	chr19:58990941-58991243(-)$1	302	52	76	22.8271
GGGAGGGGGAACGCUGGGCCCCCC	chr6:33179056-33179343(+)$1	287	139	163	22.5319
AGGGUCGAUCUGGGACCUCGGACC	chr11:803521-803795(-)$1	274	146	170	22.0683
UGUUUUCCCUUUGUAAUUGAACGU	chr12:133295185-133295456(+)$1	271	79	103	22.7469
CGCGCUGCCCCGAAUACUCGGCGC	chr9:138392524-138392902(+)$1	378	49	73	20.3468
UGUUAAAUCUAUCCCCUCUUUAUU	chr5:65364549-65364824(+)$1	275	128	152	21.9593
AGCACGCUUGCGUCUUUUGCAUGC	chr12:125270542-125270852(-)$1	310	115	139	21.8001
AGUCGGCGCUGCUGGACGGGUGGC	chr10:101379837-101380153(-)$1	316	134	158	23.0146
CAGCUGUAUAAGCGUUUUCAGUUG	chrX:153667093-153667305(+)$1	212	14	38	22.7300
CUGACUGCCCCAUGCCUACAGUGA	chr8:145623232-145623496(-)$1	264	128	152	22.9225
CCAGGGAAAGCCAGCCUCCUCCCU	chr19:1111468-1111782(-)$1	314	112	136	22.7843
CUGGGCCUUCCUCCUGCCGGCACA	chr18:47811526-47811802(-)$1	276	56	80	22.5470
ACCUGCUCUCCUCUCCCCCAGGCU	chr7:100172784-100173069(-)$1	285	121	145	22.1634
UAUGUCUUCAACAACUUCUUGCAU	chr19:55752324-55752588(-)$1	264	156	180	16.5470
GAGCUCAAGACCUCCAAGGAGAUG	chr6:31938137-31938452(-)$1	315	14	38	23.4298
UCUCUUUAAGAACAAUAUGGGAUG	chr1:145439405-145439657(+)$1	252	27	51	22.4509
GAGAGUUGUUUUCCCAGUGACUUU	chrX:151123176-151123419(-)$1	243	177	201	22.8312

#DB
(((((((.............))))	chr20:257241-257552(-)$1	1	90	114	21.8086
(((((.............))))))	chr10:72511149-72511382(+)$1	1	79	103	21.8749
(((((((...........))))))	chr17:80016436-80016716(-)$1	1	235	259	22.8312
((.(((.............))).)	chr16:72138181-72138487(+)$1	1	73	97	23.1800
...(((............)))...	chr9:139734719-139734982(+)$1	1	63	87	20.6380
((.((((...........))))..	chr21:47611730-47612028(-)$1	1	135	159	18.3343
.....((...........))....	chr2:220397433-220397717(+)$1	1	131	155	20.1108
...(((............)))(((	chr22:20074088-20074308(+)$1	1	24	48	20.0289
(((................)))).	chr8:145140333-145140595(+)$1	1	231	255	18.6625
(((((..............)))))	chr3:52561265-52561552(-)$1	1	163	187	20.3782
((((((............))))))	chr22:38211219-38211542(+)$1	1	114	138	22.1833
((((((............))))))	chr9:139728167-139728449(+)$1	1	48	72	22.1833
(((.(((............))).)	chr7:127975791-127976096(-)$1	1	190	214	23.2147
(((((.............))))))	chr1:988678-988947(+)$1	1	162	186	21.8749
(((((((............)))))	chr16:2867269-2867549(+)$1	1	249	273	22.7843
(((((((..............)))	chr10:21823408-21823713(+)$1	1	110	134	20.8086
((((...............)))))	chr3:9984900-9985200(+)$1	1	2	26	16.3588
(((((((...........))))))	chr14:105617333-105617591(-)$1	1	167	191	22.8312
.(((((............))))).	chr9:139905566-139905811(-)$1	1	75	99	23.1200
(((((((.............))))	chr11:58378641-58378937(+)$1	1	171	195	22.2358
.(((((............))))).	chr20:2637672-2637938(+)$1	1	242	266	21.2460
(((((((...........))))))	chr22:20073905-20074197(+)$1	1	251	275	22.8312
.((((..............)))))	chr21:47731365-47731683(-)$1	1	133	157	21.5120
(((((((...........))))))	chr16:4744433-4744725(+)$1	1	113	137	20.3468
.(((((............))))).	chr1:1019485-1019788(-)$1	1	4	28	21.2460
.(((((............))))).	chr10:43088753-43088992(-)$1	1	97	121	23.2292
.((((..............)))).	chr16:89805344-89805606(+)$1	1	33	57	21.5092
.((((((...........))))))	chr11:821481-821737(+)$1	1	153	177	20.9593
(((..((.............))..	chr2:232325089-232325300(-)$1	1	59	83	20.7830
(.(((..............))).)	chrX:153693217-153693487(+)$1	1	237	261	21.8623
(((.((..............)).)	chr11:290579-290809(+)$1	1	84	108	20.5730
((.(((............))).))	chr11:61643981-61644283(-)$1	1	66	90	23.2285
(((((.(...........).))))	chr6:99852201-99852463(-)$1	1	206	230	23.3951
.((((((...........))))))	chr10:27040587-27040940(-)$1	1	197	221	20.9593
.((((.............))))..	chr7:100172711-100172983(-)$1	1	35	59	22.1634
(((((((...........))))))	chr19:58990941-58991243(-)$1	1	52	76	22.8271
(((.(((...........))))))	chr6:33179056-33179343(+)$1	1	139	163	22.5319
((((((..............))))	chr11:803521-803795(-)$1	1	146	170	22.0683
(((((.............))))).	chr12:133295185-133295456(+)$1	1	79	103	22.7469
(((((((...........))))))	chr9:138392524-138392902(+)$1	1	49	73	20.3468
((.((((...........))))..	chr5:65364549-65364824(+)$1	1	128	152	21.9593
.(((.((...........)).)))	chr12:125270542-125270852(-)$1	1	115	139	21.8001
(((((.(...........).))))	chr10:101379837-101380153(-)$1	1	134	158	23.0146
.(((((............))))))	chrX:153667093-153667305(+)$1	1	14	38	22.7300
(((((((...........)))...	chr8:145623232-145623496(-)$1	1	128	152	22.9225
(((((((............)))))	chr19:1111468-1111782(-)$1	1	112	136	22.7843
(((.(((...........))).))	chr18:47811526-47811802(-)$1	1	56	80	22.5470
.((((.............))))..	chr7:100172784-100173069(-)$1	1	121	145	22.1634
(((((...............))))	chr19:55752324-55752588(-)$1	1	156	180	16.5470
.(.(((............))).).	chr6:31938137-31938452(-)$1	1	14	38	23.4298
(.((((............)))).)	chr1:145439405-145439657(+)$1	1	27	51	22.4509
(((((((...........))))))	chrX:151123176-151123419(-)$1	1	177	201	22.8312

#PSSM
g : 0.17	e : 0.15	f : 0.09	: : 0.09	d : 0.09	! : 0.07	h : 0.05	= : 0.05	[ : 0.05	c : 0.03	# : 0.03	+ : 0.01	F : 0.01	$ : 0.01	
e : 0.23	g : 0.17	d : 0.15	f : 0.13	c : 0.05	h : 0.05	= : 0.05	[ : 0.03	+ : 0.01	F : 0.01	$ : 0.01	: : 0.01	a : 0.01	
e : 0.21	g : 0.17	d : 0.17	f : 0.13	[ : 0.07	h : 0.05	= : 0.05	: : 0.03	c : 0.03	+ : 0.01	$ : 0.01	
e : 0.21	g : 0.15	c : 0.13	d : 0.13	f : 0.11	[ : 0.07	h : 0.05	= : 0.05	$ : 0.01	y : 0.01	! : 0.01	
c : 0.19	e : 0.17	g : 0.15	d : 0.13	f : 0.11	h : 0.05	= : 0.05	$ : 0.01	y : 0.01	x : 0.01	! : 0.01	b : 0.01	[ : 0.01	
c : 0.17	g : 0.13	e : 0.11	v : 0.09	b : 0.07	w : 0.07	f : 0.07	d : 0.05	= : 0.05	x : 0.03	h : 0.03	[ : 0.03	y : 0.01	
u : 0.23	v : 0.11	g : 0.11	w : 0.11	c : 0.07	b : 0.05	= : 0.05	d : 0.03	x : 0.03	h : 0.03	f : 0.03	a : 0.03	e : 0.01	y : 0.01	
t : 0.34	u : 0.28	v : 0.17	w : 0.13	x : 0.03	y : 0.01	
t : 0.34	u : 0.28	v : 0.17	w : 0.13	x : 0.03	y : 0.01	
t : 0.34	u : 0.28	v : 0.17	w : 0.13	x : 0.03	y : 0.01	
t : 0.34	u : 0.28	v : 0.17	w : 0.13	x : 0.03	y : 0.01	
t : 0.34	u : 0.28	v : 0.17	w : 0.13	x : 0.03	y : 0.01	
t : 0.34	u : 0.28	v : 0.17	w : 0.13	x : 0.03	y : 0.01	
t : 0.34	u : 0.28	v : 0.17	w : 0.13	x : 0.03	y : 0.01	
t : 0.34	u : 0.28	v : 0.17	w : 0.13	x : 0.03	y : 0.01	
t : 0.34	u : 0.28	v : 0.17	w : 0.13	x : 0.03	y : 0.01	
t : 0.34	u : 0.28	v : 0.17	w : 0.13	x : 0.03	y : 0.01	
t : 0.34	u : 0.28	v : 0.17	w : 0.13	x : 0.03	y : 0.01	
c : 0.13	w : 0.13	f : 0.11	e : 0.11	d : 0.09	v : 0.07	g : 0.07	u : 0.05	b : 0.03	x : 0.03	h : 0.03	a : 0.03	y : 0.01	= : 0.01	
c : 0.19	d : 0.15	e : 0.13	f : 0.11	g : 0.07	v : 0.05	h : 0.05	= : 0.05	w : 0.05	b : 0.03	] : 0.03	x : 0.01	
e : 0.19	c : 0.19	d : 0.15	g : 0.13	f : 0.11	h : 0.05	= : 0.05	b : 0.03	4 : 0.01	w : 0.01	] : 0.01	
e : 0.19	d : 0.19	g : 0.15	f : 0.11	c : 0.07	h : 0.05	= : 0.05	] : 0.05	4 : 0.03	b : 0.03	> : 0.01	
e : 0.19	g : 0.15	f : 0.11	d : 0.11	] : 0.09	2 : 0.07	h : 0.05	= : 0.05	4 : 0.03	c : 0.03	> : 0.01	: : 0.01	a : 0.01	
g : 0.17	f : 0.13	e : 0.09	2 : 0.09	c : 0.07	: : 0.07	d : 0.07	h : 0.05	= : 0.05	] : 0.05	4 : 0.03	> : 0.01	3 : 0.01	b : 0.01	

#score	1126.9901995072692
#seq	52
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_transcript_m2_run1.txt

#BEAR
fyyyyyyyyyyyyyyyyffffff	chr15:90345777-90346028(-)$1	251	183	206	20.5832
[ccctttttttttttcccbb]cc	chr12:133117397-133117635(+)$1	238	190	213	21.1539
fffffuuuuuuuuuuuuffffff	chr20:62579884-62580133(-)$1	249	220	243	21.8046
ddddtttttttttttdddd4444	chr3:47451502-47451803(+)$1	301	78	101	20.6118
cccwwwwwwwwwwwwwwccc22c	chr9:136294070-136294324(+)$1	254	55	78	22.6098
c[bbvvvvvvvvvvvvvbb]ccc	chr16:89723359-89723616(-)$1	257	187	210	22.7082
ggggguuuuuuuuuuuugggggg	chr19:15354140-15354397(-)$1	257	86	109	22.4957
ccbbvvvvvvvvvvvvvbb]ccc	chr10:77432258-77432471(+)$1	213	178	201	22.7225
cccccctttttttttttccc]cc	chrX:129147781-129148014(+)$1	233	6	29	21.7739
ggggguuuuuuuuuuuugggggg	chr20:400336-400570(+)$1	234	206	229	22.4957
!ddddtttttttttttdddd22d	chr19:912494-912812(-)$1	318	122	145	21.5382
eeeeeuuuuuuuuuuuueeeee:	chr20:36021082-36021346(+)$1	264	55	78	21.4736
iiiiiuuuuuuuuuuuuiiiiii	chr20:401340-401551(+)$1	211	117	140	22.6828
cc[ayyyyyyyyyyyyyyyya]c	chr19:45323159-45323412(+)$1	253	135	158	21.1128
bbyyyyyyyyyyyyyyyybb22=	chr12:6715817-6716058(-)$1	241	68	91	20.7724
ggggguuuuuuuuuuuugggggg	chr1:38462701-38462980(-)$1	279	250	273	22.4957
[bbyyyyyyyyyyyyyyyybb]f	chr5:59623999-59624261(-)$1	262	151	174	20.8057
[bbwwwwwwwwwwwwwwbb333d	chr1:27481086-27481406(-)$1	320	93	116	22.4040
======ttttttttttt======	chr17:7311412-7311683(+)$1	271	100	123	21.3505
d[bbwwwwwwwwwwwwwwbb]dd	chr16:89974690-89974998(+)$1	308	193	216	21.4057
!dddduuuuuuuuuuuudddd55	chr5:1083554-1083857(-)$1	303	166	189	21.2626
ffffvvvvvvvvvvvvvffffff	chr2:3420734-3420974(+)$1	240	190	213	22.2955
[ddddtttttttttttdddd]bb	chr19:48957726-48958006(+)$1	280	144	167	21.1244
eeeevvvvvvvvvvvvveeeee]	chr19:2013342-2013633(-)$1	291	216	239	22.7564
ffffvvvvvvvvvvvvvffffff	chr19:496414-496712(-)$1	298	37	60	22.2955
[bbwwwwwwwwwwwwwwbb333f	chr12:132579975-132580269(+)$1	294	249	272	22.4633
"dddduuuuuuuuuuuuddddee	chr19:1395863-1396127(-)$1	264	208	231	22.3390
eeeeeuuuuuuuuuuuueeeee:	chr8:145065381-145065624(+)$1	243	124	147	21.4736
fffwwwwwwwwwwwwwwffffff	chr12:49445608-49445838(-)$1	230	192	215	21.4323
cyyyyyyyyyyyyyyyyccc22a	chr7:1028437-1028664(+)$1	227	89	112	21.4923
fffccctttttttttttccc]ff	chr16:85673934-85674199(+)$1	265	23	46	21.3845
[bbyyyyyyyyyyyyyyyybb]c	chr11:801513-801772(-)$1	259	123	146	20.8939
hhhhvvvvvvvvvvvvvhhhhhh	chr19:54369669-54369969(+)$1	300	46	69	21.0701
c[bbvvvvvvvvvvvvvbb333c	chr17:80281499-80281754(-)$1	255	29	52	23.4281
[dddduuuuuuuuuuuudddd]d	chr8:123862932-123863213(+)$1	281	109	132	22.7632
fffawwwwwwwwwwwwwwa]fff	chr16:591581-591844(+)$1	263	96	119	21.6748
cyyyyyyyyyyyyyyyyccc444	chr5:59625993-59626295(-)$1	302	171	194	21.5132
cyyyyyyyyyyyyyyyyccc22c	chr14:99976949-99977208(+)$1	259	100	123	21.5499
!cccvvvvvvvvvvvvvccc22i	chr7:73013883-73014119(-)$1	236	17	40	23.7489
!!ccctttttttttttccc333d	chr16:89362050-89362312(-)$1	262	120	143	22.5162
[cccvvvvvvvvvvvvvcccccc	chr16:88539820-88540053(+)$1	233	118	141	23.5161
fffffuuuuuuuuuuuuffffff	chr7:737361-737635(-)$1	274	214	237	21.8046
#bbxxxxxxxxxxxxxxxbb333	chrX:51637844-51638098(+)$1	254	69	92	17.8745
iiiiiuuuuuuuuuuuuiiiiii	chr12:133531049-133531302(-)$1	253	66	89	22.6828
eeeevvvvvvvvvvvvveeeee:	chr20:60925772-60926011(-)$1	239	168	191	21.9328
d[bbvvvvvvvvvvvvvbb]ddd	chr9:96021510-96021777(+)$1	267	148	171	22.2801
eeeeuuuuuuuuuuuueeeee:g	chr20:401004-401252(+)$1	248	80	103	21.0723
[ddddtttttttttttdddd]bb	chr14:21905052-21905300(-)$1	248	179	202	21.1244
"cccvvvvvvvvvvvvvccc]ee	chr17:7154822-7155087(-)$1	265	11	34	23.4369
ggggyyyyyyyyyyyyyyyyggg	chr20:62573731-62574014(-)$1	283	26	49	20.8004
dd[bbuuuuuuuuuuuubb333d	chr19:42734460-42734747(-)$1	287	42	65	22.6768
ddddvvvvvvvvvvvvvdddd22	chr16:2056810-2057030(-)$1	220	150	173	22.7339
ddddvvvvvvvvvvvvvdddd]e	chr13:113738399-113738879(+)$1	480	354	377	22.9197
eeeevvvvvvvvvvvvveeeee:	chr14:103575291-103575582(+)$1	291	14	37	21.9328
ddddvvvvvvvvvvvvvdddd:F	chr16:57798457-57798777(-)$1	320	130	153	21.6080
eeeeuuuuuuuuuuuueeeee]f	chr13:113815229-113815501(+)$1	272	244	267	22.0644
ddddtttttttttttdddda22a	chr19:39664765-39665000(+)$1	235	198	221	20.5666
eeeewwwwwwwwwwwwwweeeee	chr15:67327585-67327844(-)$1	259	37	60	21.6131
eeeevvvvvvvvvvvvveeeee2	chr11:2159515-2159738(-)$1	223	150	173	22.5410
[cccuuuuuuuuuuuucccdddd	chr13:113364602-113364850(+)$1	248	128	151	22.3399
ddddvvvvvvvvvvvvvdddd::	chr19:45323377-45323685(+)$1	308	144	167	21.1506

#otherMatches

#Seq PSSM
CCCCCUACCCCUUCCCUGCAGCU	chr15:90345777-90346028(-)$1	251	183	206	20.5832
UCAGGUGCAAAUCCACUGUGAGC	chr12:133117397-133117635(+)$1	238	190	213	21.1539
gccucccuccUCACACCGAGGCG	chr20:62579884-62580133(-)$1	249	220	243	21.8046
AGUGCCACCCCGCUCCACUUUCC	chr3:47451502-47451803(+)$1	301	78	101	20.6118
CGUCCCCACCUCUCCCUACGUCC	chr9:136294070-136294324(+)$1	254	55	78	22.6098
UCCCCAAAUCUCAACCCGGUAUG	chr16:89723359-89723616(-)$1	257	187	210	22.7082
UGUGUUCUUCCAGCUUUGCACAA	chr19:15354140-15354397(-)$1	257	86	109	22.4957
agcgauuuucccaccuccgucuc	chr10:77432258-77432471(+)$1	213	178	201	22.7225
cagcggccccugccccuccgucu	chrX:129147781-129148014(+)$1	233	6	29	21.7739
GACCUGCCCUCUCUCAAAGGUCA	chr20:400336-400570(+)$1	234	206	229	22.4957
CACCCCCUCACUCUCCGGGUCCG	chr19:912494-912812(-)$1	318	122	145	21.5382
aggUCUCCCUGCCCAUUGACCUC	chr20:36021082-36021346(+)$1	264	55	78	21.4736
GGUCUGACCCGCCCCCGAGGCCC	chr20:401340-401551(+)$1	211	117	140	22.6828
agccucauccccaacuccaugcc	chr19:45323159-45323412(+)$1	253	135	158	21.1128
GCGCCCCCCCACCCCCAAGUGAC	chr12:6715817-6716058(-)$1	241	68	91	20.7724
AUCUAGACUUCUCUUUAUAGGUU	chr1:38462701-38462980(-)$1	279	250	273	22.4957
UGACCAAAACUUCAUAAAAUCUC	chr5:59623999-59624261(-)$1	262	151	174	20.8057
CCCUCUCUCCUUUUCCUGGACUG	chr1:27481086-27481406(-)$1	320	93	116	22.4040
cccuucucucucucucCGAGGGG	chr17:7311412-7311683(+)$1	271	100	123	21.3505
CCAGCUCCCACCUCUUUCCUCGC	chr16:89974690-89974998(+)$1	308	193	216	21.4057
CUGGCAGAGCCAUAGAAGCCAAA	chr5:1083554-1083857(-)$1	303	166	189	21.2626
UAUAUCUUCUGUCAUUUUGUAAA	chr2:3420734-3420974(+)$1	240	190	213	22.2955
UGAGCCAUCCCCUCCUGCUCUGC	chr19:48957726-48958006(+)$1	280	144	167	21.1244
GGGUCCCUCCCUCCCCAGCCCCC	chr19:2013342-2013633(-)$1	291	216	239	22.7564
gcccccuccucucucccgggccc	chr19:496414-496712(-)$1	298	37	60	22.2955
CUCUCCAUUGCAUCUUUGAUUUU	chr12:132579975-132580269(+)$1	294	249	272	22.4633
CCUGCCCAAGUCCACACGCAGGC	chr19:1395863-1396127(-)$1	264	208	231	22.3390
GGGGCCCCUUACCCACAGCCCCC	chr8:145065381-145065624(+)$1	243	124	147	21.4736
CUCUGUCCCCUCCACCUGAGGAG	chr12:49445608-49445838(-)$1	230	192	215	21.4323
CUCCCACCCCACAGCUCGGACUG	chr7:1028437-1028664(+)$1	227	89	112	21.4923
CCAGCCACCCAUAGCCCGGCUUG	chr16:85673934-85674199(+)$1	265	23	46	21.3845
UGACCUCCUCUCUCCCCCAUCCC	chr11:801513-801772(-)$1	259	123	146	20.8939
CCCGCCCUGCCCCUCCCCGGGGG	chr19:54369669-54369969(+)$1	300	46	69	21.0701
UCGCUGCCCCACUCUCUGCCUCA	chr17:80281499-80281754(-)$1	255	29	52	23.4281
ucagauuuuguuucuccucugcc	chr8:123862932-123863213(+)$1	281	109	132	22.7632
agccgucauugcaauccagcguu	chr16:591581-591844(+)$1	263	96	119	21.6748
uuuaccauuauaucaucacaucu	chr5:59625993-59626295(-)$1	302	171	194	21.5132
GCCCCCGCCCAUUCCCCCACCCG	chr14:99976949-99977208(+)$1	259	100	123	21.5499
AGGCCACUCUCCUCUCAGCUGUU	chr7:73013883-73014119(-)$1	236	17	40	23.7489
CCGCUCCGAUCCCACCAGCACAG	chr16:89362050-89362312(-)$1	262	120	143	22.5162
CGCCCCACUUCUCCCAUGGCCGG	chr16:88539820-88540053(+)$1	233	118	141	23.5161
caaccuugccacugaaugguugg	chr7:737361-737635(-)$1	274	214	237	21.8046
CGCCCCACCCCUCAUUUUGCCCU	chrX:51637844-51638098(+)$1	254	69	92	17.8745
GGGAUAAGGGAUUAGGGAUCCCU	chr12:133531049-133531302(-)$1	253	66	89	22.6828
acgcaaaccaguaCUCAGCGUGG	chr20:60925772-60926011(-)$1	239	168	191	21.9328
ACUGCCUCCACAACCCACACUGC	chr9:96021510-96021777(+)$1	267	148	171	22.2801
GUCACUUCCCCACCCCUGACGUU	chr20:401004-401252(+)$1	248	80	103	21.0723
CCAGAAAUCUUCCGCCUCUGCUG	chr14:21905052-21905300(-)$1	248	179	202	21.1244
CCGCCCUCCCCGUUCCUGCGAGC	chr17:7154822-7155087(-)$1	265	11	34	23.4369
CUGACCGCCCACACUCCUCCUCA	chr20:62573731-62574014(-)$1	283	26	49	20.8004
GGACCUCCUACCCCCUUGGCCCC	chr19:42734460-42734747(-)$1	287	42	65	22.6768
AGUGCCCUUCCCCUCAUCAUUUG	chr16:2056810-2057030(-)$1	220	150	173	22.7339
CUAGAACCAUCUGUGCCCUAGAG	chr13:113738399-113738879(+)$1	480	354	377	22.9197
CUGGUUCAUCCCCUUCCCCAGGC	chr14:103575291-103575582(+)$1	291	14	37	21.9328
UAGGAAUCCCCCAACCCCCUGAG	chr16:57798457-57798777(-)$1	320	130	153	21.6080
UGCCACCAGGGCCACAGGCAGUG	chr13:113815229-113815501(+)$1	272	244	267	22.0644
CCAGACCUGCCCCUCCUGGGUUC	chr19:39664765-39665000(+)$1	235	198	221	20.5666
CUCCCCACCCCACACCCAGGAGG	chr15:67327585-67327844(-)$1	259	37	60	21.6131
UCGCACAUUCGGCCCCCGCGACU	chr11:2159515-2159738(-)$1	223	150	173	22.5410
CGCUCCCCAGAAAACAAGCGCCC	chr13:113364602-113364850(+)$1	248	128	151	22.3399
CUAGCCAUUUcccaacccuaguc	chr19:45323377-45323685(+)$1	308	144	167	21.1506

#DB
(................))))))	chr15:90345777-90346028(-)$1	1	183	206	20.5832
.(((...........))))).))	chr12:133117397-133117635(+)$1	1	190	213	21.1539
(((((............))))))	chr20:62579884-62580133(-)$1	1	220	243	21.8046
((((...........))))....	chr3:47451502-47451803(+)$1	1	78	101	20.6118
(((..............)))..)	chr9:136294070-136294324(+)$1	1	55	78	22.6098
(.((.............)).)))	chr16:89723359-89723616(-)$1	1	187	210	22.7082
(((((............))))))	chr19:15354140-15354397(-)$1	1	86	109	22.4957
((((.............)).)))	chr10:77432258-77432471(+)$1	1	178	201	22.7225
((((((...........))).))	chrX:129147781-129148014(+)$1	1	6	29	21.7739
(((((............))))))	chr20:400336-400570(+)$1	1	206	229	22.4957
.((((...........))))..)	chr19:912494-912812(-)$1	1	122	145	21.5382
(((((............))))).	chr20:36021082-36021346(+)$1	1	55	78	21.4736
(((((............))))))	chr20:401340-401551(+)$1	1	117	140	22.6828
((.(................).)	chr19:45323159-45323412(+)$1	1	135	158	21.1128
((................))..)	chr12:6715817-6716058(-)$1	1	68	91	20.7724
(((((............))))))	chr1:38462701-38462980(-)$1	1	250	273	22.4957
.((................)).)	chr5:59623999-59624261(-)$1	1	151	174	20.8057
.((..............))...)	chr1:27481086-27481406(-)$1	1	93	116	22.4040
((((((...........))))))	chr17:7311412-7311683(+)$1	1	100	123	21.3505
(.((..............)).))	chr16:89974690-89974998(+)$1	1	193	216	21.4057
.((((............))))..	chr5:1083554-1083857(-)$1	1	166	189	21.2626
((((.............))))))	chr2:3420734-3420974(+)$1	1	190	213	22.2955
.((((...........)))).))	chr19:48957726-48958006(+)$1	1	144	167	21.1244
((((.............))))).	chr19:2013342-2013633(-)$1	1	216	239	22.7564
((((.............))))))	chr19:496414-496712(-)$1	1	37	60	22.2955
.((..............))...)	chr12:132579975-132580269(+)$1	1	249	272	22.4633
.((((............))))))	chr19:1395863-1396127(-)$1	1	208	231	22.3390
(((((............))))).	chr8:145065381-145065624(+)$1	1	124	147	21.4736
(((..............))))))	chr12:49445608-49445838(-)$1	1	192	215	21.4323
(................)))..)	chr7:1028437-1028664(+)$1	1	89	112	21.4923
((((((...........))).))	chr16:85673934-85674199(+)$1	1	23	46	21.3845
.((................)).)	chr11:801513-801772(-)$1	1	123	146	20.8939
((((.............))))))	chr19:54369669-54369969(+)$1	1	46	69	21.0701
(.((.............))...)	chr17:80281499-80281754(-)$1	1	29	52	23.4281
.((((............)))).)	chr8:123862932-123863213(+)$1	1	109	132	22.7632
((((..............).)))	chr16:591581-591844(+)$1	1	96	119	21.6748
(................)))...	chr5:59625993-59626295(-)$1	1	171	194	21.5132
(................)))..)	chr14:99976949-99977208(+)$1	1	100	123	21.5499
.(((.............)))..)	chr7:73013883-73014119(-)$1	1	17	40	23.7489
..(((...........)))...)	chr16:89362050-89362312(-)$1	1	120	143	22.5162
.(((.............))))))	chr16:88539820-88540053(+)$1	1	118	141	23.5161
(((((............))))))	chr7:737361-737635(-)$1	1	214	237	21.8046
.((...............))...	chrX:51637844-51638098(+)$1	1	69	92	17.8745
(((((............))))))	chr12:133531049-133531302(-)$1	1	66	89	22.6828
((((.............))))).	chr20:60925772-60926011(-)$1	1	168	191	21.9328
(.((.............)).)))	chr9:96021510-96021777(+)$1	1	148	171	22.2801
((((............))))).(	chr20:401004-401252(+)$1	1	80	103	21.0723
.((((...........)))).))	chr14:21905052-21905300(-)$1	1	179	202	21.1244
.(((.............))).))	chr17:7154822-7155087(-)$1	1	11	34	23.4369
((((................)))	chr20:62573731-62574014(-)$1	1	26	49	20.8004
((.((............))...)	chr19:42734460-42734747(-)$1	1	42	65	22.6768
((((.............))))..	chr16:2056810-2057030(-)$1	1	150	173	22.7339
((((.............)))).)	chr13:113738399-113738879(+)$1	1	354	377	22.9197
((((.............))))).	chr14:103575291-103575582(+)$1	1	14	37	21.9328
((((.............)))).)	chr16:57798457-57798777(-)$1	1	130	153	21.6080
((((............))))).)	chr13:113815229-113815501(+)$1	1	244	267	22.0644
((((...........)))))..)	chr19:39664765-39665000(+)$1	1	198	221	20.5666
((((..............)))))	chr15:67327585-67327844(-)$1	1	37	60	21.6131
((((.............))))).	chr11:2159515-2159738(-)$1	1	150	173	22.5410
.(((............)))))))	chr13:113364602-113364850(+)$1	1	128	151	22.3399
((((.............))))..	chr19:45323377-45323685(+)$1	1	144	167	21.1506

#PSSM
[ : 0.16	d : 0.14	c : 0.14	e : 0.14	f : 0.13	g : 0.06	! : 0.06	i : 0.03	" : 0.03	b : 0.01	= : 0.01	h : 0.01	# : 0.01	
d : 0.21	c : 0.14	e : 0.14	f : 0.11	b : 0.09	y : 0.06	[ : 0.06	g : 0.06	i : 0.03	= : 0.01	h : 0.01	! : 0.01	
d : 0.19	b : 0.16	e : 0.14	c : 0.13	f : 0.11	y : 0.08	g : 0.06	i : 0.03	[ : 0.03	= : 0.01	h : 0.01	
d : 0.19	e : 0.14	c : 0.13	y : 0.11	b : 0.09	f : 0.06	w : 0.06	g : 0.06	i : 0.03	a : 0.03	= : 0.01	h : 0.01	x : 0.01	
v : 0.29	y : 0.14	w : 0.11	d : 0.09	t : 0.04	g : 0.04	c : 0.04	u : 0.04	f : 0.03	e : 0.03	i : 0.03	= : 0.01	x : 0.01	b : 0.01	
v : 0.29	u : 0.26	y : 0.14	t : 0.11	w : 0.11	c : 0.03	= : 0.01	x : 0.01	
v : 0.29	u : 0.26	t : 0.16	y : 0.14	w : 0.11	x : 0.01	
v : 0.29	u : 0.26	t : 0.16	y : 0.14	w : 0.11	x : 0.01	
v : 0.29	u : 0.26	t : 0.16	y : 0.14	w : 0.11	x : 0.01	
v : 0.29	u : 0.26	t : 0.16	y : 0.14	w : 0.11	x : 0.01	
v : 0.29	u : 0.26	t : 0.16	y : 0.14	w : 0.11	x : 0.01	
v : 0.29	u : 0.26	t : 0.16	y : 0.14	w : 0.11	x : 0.01	
v : 0.29	u : 0.26	t : 0.16	y : 0.14	w : 0.11	x : 0.01	
v : 0.29	u : 0.26	t : 0.16	y : 0.14	w : 0.11	x : 0.01	
v : 0.29	u : 0.26	t : 0.16	y : 0.14	w : 0.11	x : 0.01	
v : 0.29	u : 0.26	y : 0.14	w : 0.11	t : 0.11	d : 0.03	c : 0.01	x : 0.01	
v : 0.29	u : 0.21	y : 0.14	w : 0.11	d : 0.08	c : 0.04	t : 0.04	e : 0.03	x : 0.01	
c : 0.19	d : 0.19	e : 0.13	b : 0.11	f : 0.09	y : 0.08	g : 0.04	w : 0.04	i : 0.03	= : 0.01	h : 0.01	x : 0.01	
d : 0.19	b : 0.18	c : 0.18	e : 0.14	f : 0.09	y : 0.06	g : 0.04	i : 0.03	= : 0.01	h : 0.01	a : 0.01	
d : 0.18	c : 0.14	e : 0.14	f : 0.09	b : 0.09	3 : 0.08	] : 0.06	g : 0.04	i : 0.03	y : 0.03	4 : 0.01	= : 0.01	h : 0.01	a : 0.01	
e : 0.14	d : 0.14	f : 0.11	] : 0.11	2 : 0.11	3 : 0.09	g : 0.06	c : 0.04	4 : 0.03	i : 0.03	b : 0.03	a : 0.01	= : 0.01	h : 0.01	
e : 0.14	f : 0.13	2 : 0.13	] : 0.09	3 : 0.09	c : 0.08	g : 0.06	d : 0.04	: : 0.04	4 : 0.03	i : 0.03	b : 0.03	= : 0.01	5 : 0.01	h : 0.01	
f : 0.18	c : 0.16	d : 0.13	g : 0.08	: : 0.08	e : 0.06	i : 0.04	4 : 0.03	= : 0.03	b : 0.03	a : 0.03	2 : 0.03	5 : 0.01	] : 0.01	h : 0.01	3 : 0.01	F : 0.01	

#score	1333.1533820910852
#seq	61
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_UTR_m2_run2.txt

#BEAR
dddd!!a!!ccc[cccmmmmccc]ccc22a]	chr17:26940991-26941300(-)$1	309	22	53	14.5197
ffffeeeee[a[ddddmmmmdddd]aeeeee	chr17:46052349-46052635(+)$1	286	56	87	14.3429
eeeeeeeeee[cccbbmmmmbb333ccc]ee	chr6:43738480-43738702(+)$1	222	163	194	13.5095
fffff"""dddd[cccmmmmccc4444dddd	chr17:74732714-74732970(-)$1	256	199	230	13.6998
ggeeeee!!gggggggmmmmgggggggeeee	chr12:56554868-56555123(+)$1	255	72	103	14.0491
dddd[dddd"""ddddmmmmdddd]dddddd	chr11:62609091-62609322(-)$1	231	152	183	15.1421
Dggggggg[gggggggmmmmggggggg]ggg	chr11:72414344-72414560(-)$1	216	150	181	12.3631
gggggg$$$$$ccc[ammmma]ccc]ggggg	chr4:71847769-71848022(+)$1	253	31	62	13.4460
dddd[dddd"""ddddmmmmdddd]dddddd	chr11:62609122-62609357(-)$1	235	187	218	15.1421

#otherMatches

#Seq PSSM
CUGGAAGAGGCGGGGCUCGUGUCACGCAGCA	chr17:26940991-26941300(-)$1	309	22	53	14.5197
aaguggggcugggaAGCUGACUUCGUGCUCU	chr17:46052349-46052635(+)$1	286	56	87	14.3429
CGUGGUCCGCGCGGGGGAAGCCGAGCCGAGC	chr6:43738480-43738702(+)$1	222	163	194	13.5095
GGGUGCACGCCGCGUCUCGCGACCCUCCGGC	chr17:74732714-74732970(-)$1	256	199	230	13.6998
GUGUUCUUGCUGCUUAGGUUUGGGUGGGGGA	chr12:56554868-56555123(+)$1	255	72	103	14.0491
ggagauggaauaggagcuugcuccguccacu	chr11:62609091-62609322(-)$1	231	152	183	15.1421
UCUGGCUGACUGGGCAGCUGUGUCCAGGCAG	chr11:72414344-72414560(-)$1	216	150	181	12.3631
CCUCAAAUGAAGCAGUGUGGAGUGUAUUGGG	chr4:71847769-71848022(+)$1	253	31	62	13.4460
ggagauggaauaggagcuugcuccguccacu	chr11:62609122-62609357(-)$1	235	187	218	15.1421

#DB
((((..(..(((.(((....))).)))..).	chr17:26940991-26941300(-)$1	1	22	53	14.5197
))))(((((.(.((((....)))).))))))	chr17:46052349-46052635(+)$1	1	56	87	14.3429
((((((((((.(((((....))...))).))	chr6:43738480-43738702(+)$1	1	163	194	13.5095
(((((...((((.(((....)))....))))	chr17:74732714-74732970(-)$1	1	199	230	13.6998
))(((((..(((((((....)))))))))))	chr12:56554868-56555123(+)$1	1	72	103	14.0491
((((.((((...((((....)))).))))))	chr11:62609091-62609322(-)$1	1	152	183	15.1421
)(((((((.(((((((....))))))).)))	chr11:72414344-72414560(-)$1	1	150	181	12.3631
((((((.....(((.(....).))).)))))	chr4:71847769-71848022(+)$1	1	31	62	13.4460
((((.((((...((((....)))).))))))	chr11:62609122-62609357(-)$1	1	187	218	15.1421

#PSSM
d : 0.33	f : 0.22	g : 0.22	e : 0.11	D : 0.11	
d : 0.33	g : 0.33	f : 0.22	e : 0.11	
d : 0.33	f : 0.22	e : 0.22	g : 0.22	
d : 0.33	f : 0.22	e : 0.22	g : 0.22	
e : 0.33	[ : 0.22	g : 0.22	! : 0.11	f : 0.11	
e : 0.33	d : 0.22	g : 0.22	! : 0.11	" : 0.11	
e : 0.33	d : 0.22	a : 0.11	" : 0.11	g : 0.11	$ : 0.11	
! : 0.22	e : 0.22	d : 0.22	" : 0.11	g : 0.11	$ : 0.11	
d : 0.33	! : 0.22	e : 0.22	[ : 0.11	$ : 0.11	
g : 0.22	" : 0.22	c : 0.11	[ : 0.11	e : 0.11	d : 0.11	$ : 0.11	
g : 0.22	" : 0.22	c : 0.11	a : 0.11	[ : 0.11	d : 0.11	$ : 0.11	
c : 0.33	g : 0.22	" : 0.22	[ : 0.11	d : 0.11	
d : 0.33	[ : 0.22	c : 0.22	g : 0.22	
c : 0.44	d : 0.33	g : 0.22	
d : 0.33	c : 0.22	g : 0.22	b : 0.11	[ : 0.11	
d : 0.33	c : 0.22	g : 0.22	b : 0.11	a : 0.11	
m : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
d : 0.33	c : 0.22	g : 0.22	b : 0.11	a : 0.11	
d : 0.33	c : 0.22	g : 0.22	b : 0.11	] : 0.11	
c : 0.33	d : 0.33	g : 0.22	3 : 0.11	
d : 0.33	g : 0.22	] : 0.11	3 : 0.11	4 : 0.11	c : 0.11	
] : 0.33	c : 0.22	g : 0.22	3 : 0.11	4 : 0.11	
c : 0.22	g : 0.22	d : 0.22	a : 0.11	4 : 0.11	] : 0.11	
g : 0.33	c : 0.22	d : 0.22	e : 0.11	4 : 0.11	
d : 0.33	e : 0.22	2 : 0.11	c : 0.11	] : 0.11	g : 0.11	
d : 0.33	e : 0.22	g : 0.22	2 : 0.11	] : 0.11	
e : 0.33	d : 0.33	g : 0.22	a : 0.11	
e : 0.33	d : 0.33	g : 0.22	] : 0.11	

#score	126.21454167167778
#seq	9
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF470JIH_PUS1_transcript_m1_run2.txt

#BEAR
:bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHH	chrM:12134-12345(+)$1	211	91	130	40.9706
:bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHH	chrM:12059-12265(+)$1	206	166	205	40.9706
:bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHH	chrM:12177-12416(+)$1	239	48	87	40.9706
:bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHH	chrM:12080-12284(+)$1	204	145	184	40.9706
:bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHH	chrM:12077-12280(+)$1	203	148	187	40.9706
:bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHH	chrM:12114-12334(+)$1	220	111	150	40.9706
:bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHH	chrM:12084-12303(+)$1	219	141	180	40.9706
:bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHH	chrM:12072-12277(+)$1	205	153	192	40.9706
:bbqqqqqqqqbb:::eeeeeooooooeeeeeHHHHHHH	chrM:12065-12272(+)$1	207	160	199	40.9706

#otherMatches

#Seq PSSM
UGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCU	chrM:12134-12345(+)$1	211	91	130	40.9706
UGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCU	chrM:12059-12265(+)$1	206	166	205	40.9706
UGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCU	chrM:12177-12416(+)$1	239	48	87	40.9706
UGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCU	chrM:12080-12284(+)$1	204	145	184	40.9706
UGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCU	chrM:12077-12280(+)$1	203	148	187	40.9706
UGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCU	chrM:12114-12334(+)$1	220	111	150	40.9706
UGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCU	chrM:12084-12303(+)$1	219	141	180	40.9706
UGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCU	chrM:12072-12277(+)$1	205	153	192	40.9706
UGCUAACUCAUGCCCCCAUGUCUAACAACAUGGCUUUCU	chrM:12065-12272(+)$1	207	160	199	40.9706

#DB
.((........))...(((((......))))))))))))	chrM:12134-12345(+)$1	1	91	130	40.9706
.((........))...(((((......))))))))))))	chrM:12059-12265(+)$1	1	166	205	40.9706
.((........))...(((((......))))))))))))	chrM:12177-12416(+)$1	1	48	87	40.9706
.((........))...(((((......))))))))))))	chrM:12080-12284(+)$1	1	145	184	40.9706
.((........))...(((((......))))))))))))	chrM:12077-12280(+)$1	1	148	187	40.9706
.((........))...(((((......))))))))))))	chrM:12114-12334(+)$1	1	111	150	40.9706
.((........))...(((((......))))))))))))	chrM:12084-12303(+)$1	1	141	180	40.9706
.((........))...(((((......))))))))))))	chrM:12072-12277(+)$1	1	153	192	40.9706
.((........))...(((((......))))))))))))	chrM:12065-12272(+)$1	1	160	199	40.9706

#PSSM
: : 1.00	
b : 1.00	
b : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
b : 1.00	
b : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	

#score	368.7362968842001
#seq	9
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_CDS_m2_run2.txt

#BEAR
[eeeee####ddddmmmmdddd4444eee	chr3:49752945-49753230(+)$1	285	172	201	11.4916
EEEdddd!!ddddnnnnndddd4444ddd	chr11:64536407-64536640(-)$1	233	19	48	13.1058
!!ccc[dddd[bbnnnnnbbdddd]cccb	chr16:722388-722617(+)$1	229	199	228	10.7080
ffffff!!ddddooooooddddffffff]	chr7:44609307-44609532(-)$1	225	86	115	10.5796
ccc[a!!ddddcccnnnnnccc4444ddd	chr1:249144551-249144814(-)$1	263	192	221	11.5454
ccc[ccc"""ddddmmmmdddd333ccc]	chr1:156354488-156354759(+)$1	271	66	95	12.3233
ffff[bb!!ddddoooooodddd]bbfff	chr19:2108593-2108866(-)$1	273	112	141	11.2498
gggggggg"""ddddllldddd4444ggg	chr20:57269495-57269743(+)$1	248	76	105	11.5292
[a[bb[bb[ddddnnnnndddd]bb]bb]	chr7:44610991-44611232(-)$1	241	109	138	12.7389
ebb[a[bb[ddddnnnnndddd]bb]abb	chr11:65308970-65309289(-)$1	319	191	220	12.9884
gffffff[a[cccnnnnnccc]a]fffff	chrX:152960232-152960443(+)$1	211	172	201	11.0976
$eeeee"""ddddlllddddeeeee333b	chr17:1946196-1946491(+)$1	295	42	71	10.0857
[ccc[bb[ddddoooooodddd22bbccc	chr14:103576455-103576702(+)$1	247	93	122	11.1865
e[cccccceeeeennnnneeeee>>>>>>	chr22:19885461-19885754(-)$1	293	29	58	10.8792
ccc[dddd[a[ddddllldddda]dddd3	chr16:57188267-57188521(-)$1	254	210	239	10.5005
c[ccc[eeeeeddddllldddd4444eee	chr2:27465435-27465702(+)$1	267	198	227	11.1056
c[dddd[a[ddddmmmmdddd]a333ddd	chr9:117069928-117070157(+)$1	229	2	31	11.4750
eeeee[ddddaddddllldddd]a]dddd	chr19:14038836-14039078(+)$1	242	130	159	9.9197
ggggccc!!ddddoooooodddd333ccc	chr14:24113935-24114176(+)$1	241	86	115	13.5943
dddd[ccc!!cccnnnnnccc22cccddd	chr9:117051093-117051336(+)$1	243	179	208	11.7358
d[ccc####ddddnnnnndddd]ccc]dd	chr20:62572054-62572306(-)$1	252	202	231	15.2662
ffffff[eeeeennnnneeeee4444fff	chr10:45484619-45484884(+)$1	265	0	29	9.9904
[ffffff[eeeeennnnneeeee4444ff	chr11:294000-294291(+)$1	291	209	238	11.9159
fff[dddd[cccnnnnncccddddfffff	chr20:2638471-2638701(+)$1	230	161	190	9.9546
]ddddccc[ddddnnnnndddd]ccc:EE	chr1:1231298-1231574(-)$1	276	241	270	11.6507
ffff[a[a[ddddnnnnnddddaafffff	chr7:73010383-73010652(-)$1	269	132	161	14.0820
+++dddd!!ddddnnnnnddddddddfff	chr19:15491262-15491512(-)$1	250	148	177	12.1327
eeeeeeee!!cccnnnnnccc22eeeee:	chr3:52841683-52841949(+)$1	266	124	153	9.8652
eee!!bb[eeeeennnnneeeeebbeeee	chr15:73044831-73045123(-)$1	292	243	272	10.4007
hhh[dddd[ddddnnnnndddd]ddddhh	chr11:47281235-47281631(+)$1	396	284	313	13.4307
ddd[eeeee[cccnnnnnccc]eeeee33	chr14:24032498-24032768(-)$1	270	154	183	10.3031
ddd[ccc!!ddddoooooodddd22ccc4	chr16:89842050-89842312(-)$1	262	173	202	12.6304
a!!ddddbbddddnnnnndddd666666b	chr5:118865488-118865776(+)$1	288	141	170	11.6319
!!dddd"""ddddmmmmddddddddcccb	chr9:117071491-117071705(+)$1	214	127	156	11.0543
ddd[ccc!!ddddnnnnndddd4444ccc	chr1:110170915-110171172(+)$1	257	3	32	16.3315
!!dddd[ccccccnnnnnccc]ccc22dd	chr12:123465594-123465837(+)$1	243	82	111	11.1334
c!!ccc[a[ddddnnnnndddda]ccccc	chr7:100033541-100033799(-)$1	258	183	212	15.3315
eeeedddd[ddddnnnnndddd]dddd]e	chr16:30767878-30768134(+)$1	256	38	67	13.7351
[bb[dddd[ddddoooooodddd]dddd]	chr19:18546326-18546578(-)$1	252	164	193	11.4275
IIdddd"""ddddnnnnndddd4444ddd	chr19:48259845-48260094(+)$1	249	126	155	13.7290
ggggg$$$$$ddddmmmmdddd333gggg	chr20:43565176-43565448(+)$1	272	66	95	10.7443
h[a!!bb[eeeeennnnneeeee]bb]a]	chr1:110171866-110172147(+)$1	281	93	122	11.0237
###ccc"""ddddnnnnndddd]cccfff	chr2:27465965-27466223(+)$1	258	171	200	15.0605
iiiiiiiii[cccnnnnnccciiiiiiii	chr9:117062804-117063017(+)$1	213	27	56	11.1953
Fdddd####ddddnnnnndddd333dddd	chr16:1810285-1810555(+)$1	270	145	174	15.2943
ddddccc!!ddddmmmmddddccc]dddd	chr11:71202778-71203041(+)$1	263	138	167	10.4272
ccc[ccc[eeeeennnnneeeeeccc]cc	chr19:50361212-50361441(+)$1	229	45	74	12.1494
ddddccc!!ddddnnnnndddd22ccc::	chr10:135095623-135095947(-)$1	324	49	78	13.3683
hhhhhh"""acccnnnnnccc]a4444hh	chr21:46925674-46925935(+)$1	261	201	230	12.1780
ggggggg!!ddddmmmmddddgggggggb	chr2:130910560-130910838(-)$1	278	247	276	10.1328
gggg$$$$$ddddooooooddddgggggg	chr19:39962000-39962242(+)$1	242	203	232	11.0625

#otherMatches

#Seq PSSM
UUCUCUGAAUUCAUUGGCAUGAUCCAAGA	chr3:49752945-49753230(+)$1	285	172	201	11.4916
ACCUCUUUUUCCUUUAAUAGGAUCUUAAG	chr11:64536407-64536640(-)$1	233	19	48	13.1058
CCUGUGCCCGAGGGUGGACCCGGGGACAC	chr16:722388-722617(+)$1	229	199	228	10.7080
AGUUCCACUUAGGCAAGAUUGAGGAGCUU	chr7:44609307-44609532(-)$1	225	86	115	10.5796
CUGUGAAUUCUGCGGCAAGCGCUUUGAGA	chr1:249144551-249144814(-)$1	263	192	221	11.5454
CUCCUGCCUUCCAGGUGCCUGGCGAGCAU	chr1:156354488-156354759(+)$1	271	66	95	12.3233
GUGGACUCCUGCGCCUCCAUGUACAGCCG	chr19:2108593-2108866(-)$1	273	112	141	11.2498
UGGAGAAGAAGACGGUCACCGUGGAGUUU	chr20:57269495-57269743(+)$1	248	76	105	11.5292
UGUGCUCAAUGGAGAGCUUCCACUGCGCU	chr7:44610991-44611232(-)$1	241	109	138	12.7389
CCCACCCAGGACCAGCACGGUUGUGAGGG	chr11:65308970-65309289(-)$1	319	191	220	12.9884
UUCCUAGCCAGGGAGUGGCCCCGACUAGG	chrX:152960232-152960443(+)$1	211	172	201	11.0976
UGGGGACACUGACAAAGUCAUCCCCUCUC	chr17:1946196-1946491(+)$1	295	42	71	10.0857
ACCUGCGUCUAGUUCUCUCUGGCUCGAGG	chr14:103576455-103576702(+)$1	247	93	122	11.1865
CAGGGCCCUGGGGUGUUGUCCCAUCAUUU	chr22:19885461-19885754(-)$1	293	29	58	10.8792
CUGGGAGCAGCGACUCCGAGUCCAGCUCA	chr16:57188267-57188521(-)$1	254	210	239	10.5005
CACCAAGCAGGUGAGACCCUCACAGCCCU	chr2:27465435-27465702(+)$1	267	198	227	11.1056
AUCCCACGCUGCCUGCAGGUACCUACUGG	chr9:117069928-117070157(+)$1	229	2	31	11.4750
CCUGUGCCUGCCCCUGCAAGGGAGUCAGG	chr19:14038836-14039078(+)$1	242	130	159	9.9197
UUCCCUUUGCCCAGUUUCAUGGGAAUGAG	chr14:24113935-24114176(+)$1	241	86	115	13.5943
CUGCCUCCCACCCUGAGUGGGGCGGAGCA	chr9:117051093-117051336(+)$1	243	179	208	11.7358
GCGGGAUGUGGGCGCUUAGCCUCCCCUCC	chr20:62572054-62572306(-)$1	252	202	231	15.2662
CAGAUCUCAGCGUCACCUGCUGCCUUGGU	chr10:45484619-45484884(+)$1	265	0	29	9.9904
CUGGCAGAGGGCAGCCCAUGCCCCCACCU	chr11:294000-294291(+)$1	291	209	238	11.9159
AGAAUGGAAUGGAAGACCCAUCUAUCUCU	chr20:2638471-2638701(+)$1	230	161	190	9.9546
UCCCCCCUGGUCCAGGCAGGACAAGGAGG	chr1:1231298-1231574(-)$1	276	241	270	11.6507
GGCUCGUGAGCACACUCAGUGCCCAGCCC	chr7:73010383-73010652(-)$1	269	132	161	14.0820
CAAGCUCAUCAGCAAGAAGCUGGAGCGCU	chr19:15491262-15491512(-)$1	250	148	177	12.1327
AGAUGGGGUUACCUUCGUGGUCGUCCUAC	chr3:52841683-52841949(+)$1	266	124	153	9.8652
GUUCAUGACUUCCCAUUCGGAGGCAGGCU	chr15:73044831-73045123(-)$1	292	243	272	10.4007
AGAACCCACAGGUGAGGAGCUUCUGGGUU	chr11:47281235-47281631(+)$1	396	284	313	13.4307
AUGCCCUGGCAGAAGACAUUUCCCAGGUA	chr14:24032498-24032768(-)$1	270	154	183	10.3031
GGGCCGCUUGUCCACUCUGGGACUUGUGC	chr16:89842050-89842312(-)$1	262	173	202	12.6304
GGAUCUUGCACCAACAUCUGGUACUUCAG	chr5:118865488-118865776(+)$1	288	141	170	11.6319
ACUGCCUUAACAUGACCGUGUGGCAGGAG	chr9:117071491-117071705(+)$1	214	127	156	11.0543
GCUGUGGGACUGAGUCAGUCAGGGGACCA	chr1:110170915-110171172(+)$1	257	3	32	16.3315
CCGCGGCGCCAUGGCUCACGUCGGCUCCC	chr12:123465594-123465837(+)$1	243	82	111	11.1334
GAUGCCCGUGCUGAAGAGCAGCCUGGCCU	chr7:100033541-100033799(-)$1	258	183	212	15.3315
AGGCUGCUGCAGGUGGAUCCUGAGGCACG	chr16:30767878-30768134(+)$1	256	38	67	13.7351
CUGGGCGGAACCAACACACUGGUGCUGCA	chr19:18546326-18546578(-)$1	252	164	193	11.4275
GGUGGAGAAGCGGGCGUUCCGUGAGAUCC	chr19:48259845-48260094(+)$1	249	126	155	13.7290
UGGUGAUUAAGGGAUGUGUCCCCGGCACC	chr20:43565176-43565448(+)$1	272	66	95	10.7443
UGACAGCGUGGAUGAUGAGUCCAAGCCUG	chr1:110171866-110172147(+)$1	281	93	122	11.0237
GAUGCCCCGUGUCAACGAGAUAAGGUGGU	chr2:27465965-27466223(+)$1	258	171	200	15.0605
GGGUGAGGGAGCUGUGGGGGCCCUUUACC	chr9:117062804-117063017(+)$1	213	27	56	11.1953
UGUCCGGGGAGCAGGAGGUGCUGAGGGGC	chr16:1810285-1810555(+)$1	270	145	174	15.2943
UUGGCUGAUGGACAGGUGUCCCAGACCGA	chr11:71202778-71203041(+)$1	263	138	167	10.4272
AGGCAGCAUCCAGGGGAGCUGGGGCUUCC	chr19:50361212-50361441(+)$1	229	45	74	12.1494
GCAUUGUGGUUGUAACUAACAGAAGCAUU	chr10:135095623-135095947(-)$1	324	49	78	13.3683
UCCAGGUGAGCGCUCUGUGUGACGGGUUC	chr21:46925674-46925935(+)$1	261	201	230	12.1780
GGCGUCUUCAGAGAGGGUUCUAGAUGCUC	chr2:130910560-130910838(-)$1	278	247	276	10.1328
GGGGACAUGGUCAAGAGAGUGACCCUUCU	chr19:39962000-39962242(+)$1	242	203	232	11.0625

#DB
.(((((....((((....))))....)))	chr3:49752945-49753230(+)$1	1	172	201	11.4916
(((((((..((((.....))))....)))	chr11:64536407-64536640(-)$1	1	19	48	13.1058
..(((.((((.((.....)))))).))))	chr16:722388-722617(+)$1	1	199	228	10.7080
((((((..((((......)))))))))).	chr7:44609307-44609532(-)$1	1	86	115	10.5796
(((.(..(((((((.....)))....)))	chr1:249144551-249144814(-)$1	1	192	221	11.5454
(((.(((...((((....))))...))).	chr1:156354488-156354759(+)$1	1	66	95	12.3233
((((.((..((((......)))).)))))	chr19:2108593-2108866(-)$1	1	112	141	11.2498
)(((((((...((((...))))....)))	chr20:57269495-57269743(+)$1	1	76	105	11.5292
.(.((.((.((((.....)))).)).)).	chr7:44610991-44611232(-)$1	1	109	138	12.7389
(((.(.((.((((.....)))).)).)))	chr11:65308970-65309289(-)$1	1	191	220	12.9884
(((((((.(.(((.....))).).)))))	chrX:152960232-152960443(+)$1	1	172	201	11.0976
.(((((...((((...)))))))))...)	chr17:1946196-1946491(+)$1	1	42	71	10.0857
.(((.((.((((......))))..)))))	chr14:103576455-103576702(+)$1	1	93	122	11.1865
(.(((((((((((.....)))))......	chr22:19885461-19885754(-)$1	1	29	58	10.8792
(((.((((.(.((((...))))).)))).	chr16:57188267-57188521(-)$1	1	210	239	10.5005
(.(((.(((((((((...))))....)))	chr2:27465435-27465702(+)$1	1	198	227	11.1056
(.((((.(.((((....)))).)...)))	chr9:117069928-117070157(+)$1	1	2	31	11.4750
(((((.(((((((((...)))).).))))	chr19:14038836-14039078(+)$1	1	130	159	9.9197
(((((((..((((......))))...)))	chr14:24113935-24114176(+)$1	1	86	115	13.5943
((((.(((..(((.....)))..))))))	chr9:117051093-117051336(+)$1	1	179	208	11.7358
(.(((....((((.....)))).))).))	chr20:62572054-62572306(-)$1	1	202	231	15.2662
((((((.(((((.....)))))....)))	chr10:45484619-45484884(+)$1	1	0	29	9.9904
.((((((.(((((.....)))))....))	chr11:294000-294291(+)$1	1	209	238	11.9159
(((.((((.(((.....))))))))))))	chr20:2638471-2638701(+)$1	1	161	190	9.9546
.))))(((.((((.....)))).))).))	chr1:1231298-1231574(-)$1	1	241	270	11.6507
((((.(.(.((((.....)))))))))))	chr7:73010383-73010652(-)$1	1	132	161	14.0820
...((((..((((.....)))))))))))	chr19:15491262-15491512(-)$1	1	148	177	12.1327
)))(((((..(((.....)))..))))).	chr3:52841683-52841949(+)$1	1	124	153	9.8652
(((..((.(((((.....)))))))))))	chr15:73044831-73045123(-)$1	1	243	272	10.4007
(((.((((.((((.....)))).))))))	chr11:47281235-47281631(+)$1	1	284	313	13.4307
(((.(((((.(((.....))).)))))..	chr14:24032498-24032768(-)$1	1	154	183	10.3031
(((.(((..((((......))))..))).	chr16:89842050-89842312(-)$1	1	173	202	12.6304
(..((((((((((.....))))......)	chr5:118865488-118865776(+)$1	1	141	170	11.6319
..((((...((((....))))))))))))	chr9:117071491-117071705(+)$1	1	127	156	11.0543
(((.(((..((((.....))))....)))	chr1:110170915-110171172(+)$1	1	3	32	16.3315
..((((.((((((.....))).)))..))	chr12:123465594-123465837(+)$1	1	82	111	11.1334
(..(((.(.((((.....))))).)))))	chr7:100033541-100033799(-)$1	1	183	212	15.3315
((((((((.((((.....)))).)))).)	chr16:30767878-30768134(+)$1	1	38	67	13.7351
.((.((((.((((......)))).)))).	chr19:18546326-18546578(-)$1	1	164	193	11.4275
((((((...((((.....))))....)))	chr19:48259845-48260094(+)$1	1	126	155	13.7290
(((((.....((((....))))...))))	chr20:43565176-43565448(+)$1	1	66	95	10.7443
(.(..((.(((((.....))))).)).).	chr1:110171866-110172147(+)$1	1	93	122	11.0237
...(((...((((.....)))).))))))	chr2:27465965-27466223(+)$1	1	171	200	15.0605
(((((((((.(((.....)))))))))))	chr9:117062804-117063017(+)$1	1	27	56	11.1953
(((((....((((.....))))...))))	chr16:1810285-1810555(+)$1	1	145	174	15.2943
(((((((..((((....))))))).))))	chr11:71202778-71203041(+)$1	1	138	167	10.4272
(((.(((.(((((.....)))))))).))	chr19:50361212-50361441(+)$1	1	45	74	12.1494
))))(((..((((.....))))..)))..	chr10:135095623-135095947(-)$1	1	49	78	13.3683
((((((...((((.....))).)....))	chr21:46925674-46925935(+)$1	1	201	230	12.1780
(((((((..((((....))))))))))))	chr2:130910560-130910838(-)$1	1	247	276	10.1328
((((.....((((......))))))))))	chr19:39962000-39962242(+)$1	1	203	232	11.0625

#PSSM
c : 0.13	d : 0.13	g : 0.11	e : 0.11	[ : 0.09	f : 0.09	! : 0.05	h : 0.05	E : 0.01	$ : 0.01	] : 0.01	+ : 0.01	a : 0.01	I : 0.01	# : 0.01	i : 0.01	F : 0.01	
d : 0.15	f : 0.13	e : 0.11	! : 0.09	c : 0.09	g : 0.09	[ : 0.09	b : 0.03	h : 0.03	E : 0.01	a : 0.01	+ : 0.01	I : 0.01	# : 0.01	i : 0.01	
d : 0.23	c : 0.17	f : 0.13	e : 0.11	g : 0.09	b : 0.03	h : 0.03	! : 0.03	E : 0.01	[ : 0.01	+ : 0.01	a : 0.01	# : 0.01	i : 0.01	
d : 0.23	[ : 0.21	c : 0.13	f : 0.11	e : 0.09	g : 0.09	! : 0.03	b : 0.01	i : 0.01	h : 0.01	
d : 0.27	c : 0.25	e : 0.09	f : 0.07	[ : 0.07	g : 0.05	a : 0.03	! : 0.03	b : 0.01	i : 0.01	h : 0.01	$ : 0.01	
d : 0.23	c : 0.23	[ : 0.09	e : 0.07	f : 0.07	b : 0.07	g : 0.03	# : 0.03	$ : 0.03	! : 0.01	a : 0.01	i : 0.01	h : 0.01	
d : 0.19	c : 0.19	b : 0.11	" : 0.09	[ : 0.09	# : 0.05	e : 0.05	! : 0.03	g : 0.03	f : 0.03	$ : 0.03	i : 0.01	
! : 0.19	d : 0.15	" : 0.11	[ : 0.11	c : 0.07	e : 0.07	# : 0.05	b : 0.05	a : 0.05	$ : 0.03	g : 0.01	i : 0.01	
! : 0.21	[ : 0.21	e : 0.15	" : 0.13	d : 0.09	# : 0.05	$ : 0.03	a : 0.01	b : 0.01	c : 0.01	i : 0.01	
d : 0.60	e : 0.13	[ : 0.05	" : 0.03	a : 0.03	! : 0.03	c : 0.03	# : 0.01	$ : 0.01	
d : 0.62	c : 0.15	e : 0.13	[ : 0.03	" : 0.01	a : 0.01	
d : 0.68	c : 0.17	e : 0.11	b : 0.01	
d : 0.64	c : 0.15	e : 0.09	o : 0.03	n : 0.03	b : 0.01	
n : 0.60	d : 0.13	o : 0.13	m : 0.07	c : 0.01	l : 0.01	
n : 0.62	m : 0.13	o : 0.13	d : 0.07	l : 0.01	
n : 0.62	m : 0.13	o : 0.13	l : 0.09	
n : 0.62	m : 0.13	o : 0.13	l : 0.07	d : 0.01	
n : 0.58	o : 0.13	d : 0.09	l : 0.07	m : 0.05	e : 0.01	c : 0.01	
d : 0.58	c : 0.15	e : 0.11	o : 0.09	b : 0.01	n : 0.01	
d : 0.68	c : 0.17	e : 0.11	b : 0.01	
d : 0.70	c : 0.15	e : 0.13	
d : 0.64	e : 0.13	] : 0.09	c : 0.03	2 : 0.03	i : 0.01	g : 0.01	
d : 0.17	4 : 0.15	] : 0.15	e : 0.13	a : 0.11	2 : 0.07	3 : 0.05	c : 0.03	f : 0.01	6 : 0.01	i : 0.01	g : 0.01	
4 : 0.19	c : 0.13	d : 0.11	] : 0.11	3 : 0.09	b : 0.05	e : 0.05	2 : 0.05	a : 0.03	g : 0.03	f : 0.01	> : 0.01	6 : 0.01	i : 0.01	
4 : 0.19	c : 0.15	b : 0.11	d : 0.11	3 : 0.09	f : 0.07	] : 0.05	e : 0.05	g : 0.03	> : 0.01	2 : 0.01	6 : 0.01	i : 0.01	
c : 0.21	4 : 0.19	d : 0.15	f : 0.07	b : 0.05	3 : 0.05	e : 0.05	g : 0.05	] : 0.03	> : 0.01	6 : 0.01	2 : 0.01	i : 0.01	
d : 0.23	c : 0.17	f : 0.15	e : 0.09	g : 0.07	] : 0.05	4 : 0.03	b : 0.01	a : 0.01	3 : 0.01	> : 0.01	: : 0.01	6 : 0.01	2 : 0.01	i : 0.01	
d : 0.23	c : 0.17	f : 0.17	e : 0.07	g : 0.07	b : 0.03	3 : 0.03	h : 0.03	> : 0.01	E : 0.01	6 : 0.01	] : 0.01	a : 0.01	i : 0.01	: : 0.01	
d : 0.19	f : 0.15	b : 0.11	] : 0.09	c : 0.09	e : 0.07	g : 0.05	3 : 0.03	: : 0.03	h : 0.03	> : 0.01	E : 0.01	4 : 0.01	i : 0.01	

#score	608.4753251719376
#seq	51
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_CDS_m3_run1.txt

#BEAR
c[ffffffqqqqqqqqffffff]	chr2:172016819-172017092(-)$1	273	69	92	14.8675
[ddddcccqqqqqqqqccc]ddd	chr16:599475-599739(+)$1	264	160	183	15.5516
===!!cccqqqqqqqqccc====	chr11:61583682-61583944(-)$1	262	39	62	16.7082
h!!eeeeeqqqqqqqqeeeee22	chr19:1416404-1416664(+)$1	260	199	222	14.2974
bb!!ddddqqqqqqqqdddd22b	chr11:126146853-126147099(+)$1	246	21	44	14.2123
a[ffffffqqqqqqqqffffff]	chr19:2270516-2270736(+)$1	220	126	149	14.8919
[ccc[cccqqqqqqqqcccccc2	chr1:213031754-213032006(+)$1	252	145	168	15.9610
ggggg[bbqqqqqqqqbb]gggg	chr8:103424343-103424626(-)$1	283	213	236	15.3433
ccc[ddddqqqqqqqqdddd]cc	chr16:4744410-4744702(+)$1	292	73	96	15.1291
ccc[a[bbqqqqqqqqbb]a]cc	chr8:25315622-25315949(-)$1	327	271	294	15.3164
ddd!!cccqqqqqqqqcccdddd	chr17:80708442-80708714(+)$1	272	35	58	15.7280
fff!!cccqqqqqqqqcccffff	chr21:45223339-45223599(+)$1	260	10	33	15.8507
[ccc[cccqqqqqqqqcccccc2	chr1:213031653-213031954(+)$1	301	246	269	15.9610
=eeeee[aqqqqqqqqa]eeeee	chr16:1835522-1835776(+)$1	254	138	161	15.1353
ggggg[bbqqqqqqqqbb22ggg	chr19:7970590-7970831(+)$1	241	124	147	14.9951
ffbb[cccqqqqqqqqcccbb]f	chr3:49049818-49050142(+)$1	324	192	215	14.6064
dddd[a[aqqqqqqqqa]a]ddd	chr2:27665142-27665392(+)$1	250	130	153	15.2301
iiiiiiiiqqqqqqqqiiiiiii	chr4:78740290-78740543(-)$1	253	76	99	15.7409
ddd[ddddqqqqqqqqdddd]dd	chr1:46768658-46768898(-)$1	240	188	211	14.7876
##ffffffqqqqqqqqffffff4	chr12:112035506-112035828(-)$1	322	242	265	14.8461
fff!!cccqqqqqqqqccc22ff	chr1:234614050-234614329(-)$1	279	5	28	15.7713
b[ffffffqqqqqqqqffffff]	chr19:54678022-54678317(-)$1	295	2	25	14.7222
:gggggggqqqqqqqqggggggg	chr16:69165170-69165418(-)$1	248	224	247	14.6038
ddd[ddddqqqqqqqqdddd]dd	chr3:33481058-33481335(-)$1	277	90	113	14.7876
========qqqqqqqq=======	chrX:152938605-152938853(-)$1	248	168	191	16.2548
ccffffffqqqqqqqqffffff]	chr18:51750757-51751054(-)$1	297	103	126	14.7523
bb[ccc[aqqqqqqqqa]cccbb	chr16:4431898-4432153(-)$1	255	92	115	14.8268
####ddddqqqqqqqqdddd333	chr12:53849049-53849254(+)$1	205	88	111	15.2876
iiiiicccqqqqqqqqccc]iii	chr17:47841318-47841572(-)$1	254	198	221	16.2313
ggggddddqqqqqqqqddddbbm	chr3:47454378-47454670(+)$1	292	240	263	13.8472
iiiiiiiiqqqqqqqqiiiiiii	chr11:72533816-72534061(+)$1	245	121	144	15.7409
eeeee[bbqqqqqqqqbb]eeee	chr9:139249987-139250281(+)$1	294	55	78	14.6427
[dddd[bbqqqqqqqqbb]dddd	chr19:14273428-14273683(+)$1	255	149	172	14.7530
b####cccqqqqqqqqccc333b	chr5:180651108-180651379(+)$1	271	48	71	15.8792
ddd[ddddqqqqqqqqdddd]dd	chr2:132044624-132044857(+)$1	233	185	208	14.7876
[ccc!!bbqqqqqqqqbb22ccc	chr17:7750927-7751192(+)$1	265	14	37	15.0234
iiiiiiiiqqqqqqqqiiiiiii	chr19:49964732-49965002(+)$1	270	196	219	15.7409
bb[eeeeeqqqqqqqqeeeee]b	chr17:7476602-7476864(+)$1	262	47	70	14.0561
a!!ccc[aqqqqqqqqaccc22a	chr22:50018110-50018347(-)$1	237	36	59	15.7071
iiiiiiiiqqqqqqqqiiiiiii	chrX:152938516-152938791(-)$1	275	106	129	15.7409
[dddd[bbqqqqqqqqbb]dddd	chr22:19418893-19419223(-)$1	330	299	322	14.7530
"""eeeeeqqqqqqqqeeeee]d	chr2:113999252-113999548(+)$1	296	61	84	14.7278
ffffff[aqqqqqqqqa]fffff	chr16:2867269-2867538(+)$1	269	174	197	15.0289
fffff!!aqqqqqqqqa22ffff	chr17:7476695-7476920(+)$1	225	168	191	14.6937
eee!!cccqqqqqqqqccc22ee	chr16:31044911-31045239(+)$1	328	155	178	15.6681
[gggggggqqqqqqqqggggggg	chr11:47380054-47380343(-)$1	289	49	72	15.6607
eeeee[bbqqqqqqqqbb]eeee	chr19:2270536-2270763(+)$1	227	185	208	14.6427
eeeee[bbqqqqqqqqbb]eeee	chr15:38776734-38777058(+)$1	324	195	218	14.6427
f####cccqqqqqqqqccc4444	chr19:14267297-14267578(+)$1	281	146	169	16.0082
ffffff[aqqqqqqqqa]fffff	chr20:57415148-57415480(-)$1	332	235	258	15.0289
##ffffffqqqqqqqqffffff4	chr12:112035449-112035706(-)$1	257	120	143	14.8461
ddd!!cccqqqqqqqqcccdddd	chr17:80708365-80708642(+)$1	277	112	135	15.7280
!!bb"""aqqqqqqqqa333bb2	chr16:87735206-87735482(-)$1	276	83	106	14.7118
dddd[a[aqqqqqqqqa]a]ddd	chr5:180651179-180651447(+)$1	268	118	141	15.2301
fff!!cccqqqqqqqqccc22ff	chr15:80215404-80215649(-)$1	245	11	34	15.7713
bb"""cccqqqqqqqqccc4444	chr6:111136121-111136417(-)$1	296	96	119	15.7799
ccc[ddddqqqqqqqqdddd]cc	chr16:4744323-4744564(+)$1	241	160	183	15.1291
:gggggggqqqqqqqqggggggg	chr9:139904713-139904991(-)$1	278	123	146	14.6038
a[dddd[aqqqqqqqqa]dddda	chr3:195621999-195622244(-)$1	245	50	73	15.1943
"""eeeeeqqqqqqqqeeeeeff	chr19:10407086-10407372(+)$1	286	6	29	14.6732
ddddddddqqqqqqqqdddd444	chr22:50016888-50017149(-)$1	261	202	225	14.5712
dddd[cccqqqqqqqqccc]ddd	chr17:80676173-80676426(+)$1	253	135	158	15.5481

#otherMatches

#Seq PSSM
CCCCCGCCAUGACGGAGGCGGGU	chr2:172016819-172017092(-)$1	273	69	92	14.8675
GUGGCCCUCAUCGAGAAGGCGCU	chr16:599475-599739(+)$1	264	160	183	15.5516
AUCAUACCUGUUGCCCGGUGAUU	chr11:61583682-61583944(-)$1	262	39	62	16.7082
CAAGGUGGCACAGUCCCCAUUGG	chr19:1416404-1416664(+)$1	260	199	222	14.2974
CAUCCCCUACCUGCACAGGGAUU	chr11:126146853-126147099(+)$1	246	21	44	14.2123
CUCGGUCGAGCUUUCCCGACUGC	chr19:2270516-2270736(+)$1	220	126	149	14.8919
GUGGAGCUGCAGAACGGGCCCAA	chr1:213031754-213032006(+)$1	252	145	168	15.9610
AGCUCAAUGACAGGUAAUAGGGC	chr8:103424343-103424626(-)$1	283	213	236	15.3433
CCAAUCCUGGGAGUGGGGGAGUG	chr16:4744410-4744702(+)$1	292	73	96	15.1291
ucggggcgagggcggacggugcg	chr8:25315622-25315949(-)$1	327	271	294	15.3164
CUUCACCGCCUACCACCGGAAGA	chr17:80708442-80708714(+)$1	272	35	58	15.7280
GUGUUGGCAUUCUCUGGCUCAUG	chr21:45223339-45223599(+)$1	260	10	33	15.8507
GUGGAGCUGCAGAACGGGCCCAA	chr1:213031653-213031954(+)$1	301	246	269	15.9610
UUUUCCGCGUCCCCUGGAGGAGA	chr16:1835522-1835776(+)$1	254	138	161	15.1353
UGCUCCUGCCCCGUCCCAACGAG	chr19:7970590-7970831(+)$1	241	124	147	14.9951
AGGUACACUCAAGGCUGUGACUC	chr3:49049818-49050142(+)$1	324	192	215	14.6064
GGACGGGAUGAGGCGCUGCAGUC	chr2:27665142-27665392(+)$1	250	130	153	15.2301
AGAGAAUGAGGUAGAGUGUUCUU	chr4:78740290-78740543(-)$1	253	76	99	15.7409
cccggggcAAGGCCCAGCCUGGG	chr1:46768658-46768898(-)$1	240	188	211	14.7876
CAGGGGACGUGGUCGGGUUCCUG	chr12:112035506-112035828(-)$1	322	242	265	14.8461
GGGGACGGGGAUGAGGCCGGGCC	chr1:234614050-234614329(-)$1	279	5	28	15.7713
uggggccugaucuccugggucug	chr19:54678022-54678317(-)$1	295	2	25	14.7222
UGAUUCCCUCCAACGUGGGAAUC	chr16:69165170-69165418(-)$1	248	224	247	14.6038
CGGCGCUUACAGCAUGAGGUACU	chr3:33481058-33481335(-)$1	277	90	113	14.7876
CGUCUGGGGGUGUGGACCUGGAC	chrX:152938605-152938853(-)$1	248	168	191	16.2548
CGCCGGCUGGGGAGGGGGCUGGA	chr18:51750757-51751054(-)$1	297	103	126	14.7523
UGGAGGGCGGGCUGGGGGCCUCA	chr16:4431898-4432153(-)$1	255	92	115	14.8268
GCAGUAUCAUCGGAAAGGUAAGA	chr12:53849049-53849254(+)$1	205	88	111	15.2876
CGGGGCUGCUCUCCCCCAGCCCC	chr17:47841318-47841572(-)$1	254	198	221	16.2313
CCCUCUGACGACCCCCUCAGCCU	chr3:47454378-47454670(+)$1	292	240	263	13.8472
UCUGGCUCUGGCCCCUGAGCCAG	chr11:72533816-72534061(+)$1	245	121	144	15.7409
GGGUCUCAGAAGUGUGUGUGGCC	chr9:139249987-139250281(+)$1	294	55	78	14.6427
GGUGUUGAAGGCAUAGUCCACGC	chr19:14273428-14273683(+)$1	255	149	172	14.7530
AGGAGGACAGAGAUGAGUUAGAU	chr5:180651108-180651379(+)$1	271	48	71	15.8792
CUGGAGGGAACGUCAACCCUGCA	chr2:132044624-132044857(+)$1	233	185	208	14.7876
CGGAAACCGUUCUUGGGGGcucc	chr17:7750927-7751192(+)$1	265	14	37	15.0234
GCCCAGCUGGCGGGGGAGCUGGG	chr19:49964732-49965002(+)$1	270	196	219	15.7409
UCGCGGCUAAAACACGGGUCGGG	chr17:7476602-7476864(+)$1	262	47	70	14.0561
GAGCCCAGGCCACCAACGGGAGC	chr22:50018110-50018347(-)$1	237	36	59	15.7071
CGUCUGGGGGUGUGGACCUGGAC	chrX:152938516-152938791(-)$1	275	106	129	15.7409
GUCGGGUCGGGGUCUGGAGUCGA	chr22:19418893-19419223(-)$1	330	299	322	14.7530
CCGGGAAGGAAGAAAGCUUUUAG	chr2:113999252-113999548(+)$1	296	61	84	14.7278
GGCGCCGUUAUCAGGUAGGGCGC	chr16:2867269-2867538(+)$1	269	174	197	15.0289
AGGUAUGGGAGGGCGACGCUACU	chr17:7476695-7476920(+)$1	225	168	191	14.6937
GGAAUUCCAAAUUUGAGGGCCUC	chr16:31044911-31045239(+)$1	328	155	178	15.6681
Cgcgugugugugugugugcaugu	chr11:47380054-47380343(-)$1	289	49	72	15.6607
GCGGUGCCGCGGUUUGGGGGCCG	chr19:2270536-2270763(+)$1	227	185	208	14.6427
UACUUGAAUAUCAUCUUUGAAGU	chr15:38776734-38777058(+)$1	324	195	218	14.6427
GCUAGGGGUGUCACCUCCCAACU	chr19:14267297-14267578(+)$1	281	146	169	16.0082
UGCCCGGCGGCCUAUGGGCGGGC	chr20:57415148-57415480(-)$1	332	235	258	15.0289
CAGGGGACGUGGUCGGGUUCCUG	chr12:112035449-112035706(-)$1	257	120	143	14.8461
CUUCACCGCCUACCACCGGAAGA	chr17:80708365-80708642(+)$1	277	112	135	15.7280
GACGGGAGAAGGAUGGCGGACGG	chr16:87735206-87735482(-)$1	276	83	106	14.7118
AGGAGGAAGAAGAGGGUGUGUUC	chr5:180651179-180651447(+)$1	268	118	141	15.2301
CUCAGCGCAAAGUCGGGCGGCGG	chr15:80215404-80215649(-)$1	245	11	34	15.7713
GCGAAGCUGGCGGCGGAGCGGGA	chr6:111136121-111136417(-)$1	296	96	119	15.7799
CCAAUCCUGGGAGUGGGGGAGUG	chr16:4744323-4744564(+)$1	241	160	183	15.1291
GGGUGGGGGCAGGAUGCCCCGCU	chr9:139904713-139904991(-)$1	278	123	146	14.6038
GCAGCCGCUGGGAUUUGGGGCUC	chr3:195621999-195622244(-)$1	245	50	73	15.1943
ACGUGCAGUCCACCGCCUGCAAG	chr19:10407086-10407372(+)$1	286	6	29	14.6732
GGGGGAGGACCAGGCCCCUCUGC	chr22:50016888-50017149(-)$1	261	202	225	14.5712
GGUCUCUUCAGGUGAAAAGUGAC	chr17:80676173-80676426(+)$1	253	135	158	15.5481

#DB
(.((((((........)))))).	chr2:172016819-172017092(-)$1	1	69	92	14.8675
.(((((((........))).)))	chr16:599475-599739(+)$1	1	160	183	15.5516
(((..(((........)))))))	chr11:61583682-61583944(-)$1	1	39	62	16.7082
(..(((((........)))))..	chr19:1416404-1416664(+)$1	1	199	222	14.2974
((..((((........))))..)	chr11:126146853-126147099(+)$1	1	21	44	14.2123
(.((((((........)))))).	chr19:2270516-2270736(+)$1	1	126	149	14.8919
.(((.(((........)))))).	chr1:213031754-213032006(+)$1	1	145	168	15.9610
(((((.((........)).))))	chr8:103424343-103424626(-)$1	1	213	236	15.3433
(((.((((........)))).))	chr16:4744410-4744702(+)$1	1	73	96	15.1291
(((.(.((........)).).))	chr8:25315622-25315949(-)$1	1	271	294	15.3164
(((..(((........)))))))	chr17:80708442-80708714(+)$1	1	35	58	15.7280
(((..(((........)))))))	chr21:45223339-45223599(+)$1	1	10	33	15.8507
.(((.(((........)))))).	chr1:213031653-213031954(+)$1	1	246	269	15.9610
((((((.(........).)))))	chr16:1835522-1835776(+)$1	1	138	161	15.1353
(((((.((........))..)))	chr19:7970590-7970831(+)$1	1	124	147	14.9951
((((.(((........))))).)	chr3:49049818-49050142(+)$1	1	192	215	14.6064
((((.(.(........).).)))	chr2:27665142-27665392(+)$1	1	130	153	15.2301
((((((((........)))))))	chr4:78740290-78740543(-)$1	1	76	99	15.7409
(((.((((........)))).))	chr1:46768658-46768898(-)$1	1	188	211	14.7876
..((((((........)))))).	chr12:112035506-112035828(-)$1	1	242	265	14.8461
(((..(((........)))..))	chr1:234614050-234614329(-)$1	1	5	28	15.7713
(.((((((........)))))).	chr19:54678022-54678317(-)$1	1	2	25	14.7222
.(((((((........)))))))	chr16:69165170-69165418(-)$1	1	224	247	14.6038
(((.((((........)))).))	chr3:33481058-33481335(-)$1	1	90	113	14.7876
((((((((........)))))))	chrX:152938605-152938853(-)$1	1	168	191	16.2548
((((((((........)))))).	chr18:51750757-51751054(-)$1	1	103	126	14.7523
((.(((.(........).)))))	chr16:4431898-4432153(-)$1	1	92	115	14.8268
....((((........))))...	chr12:53849049-53849254(+)$1	1	88	111	15.2876
((((((((........))).)))	chr17:47841318-47841572(-)$1	1	198	221	16.2313
))))((((........))))((.	chr3:47454378-47454670(+)$1	1	240	263	13.8472
((((((((........)))))))	chr11:72533816-72534061(+)$1	1	121	144	15.7409
(((((.((........)).))))	chr9:139249987-139250281(+)$1	1	55	78	14.6427
.((((.((........)).))))	chr19:14273428-14273683(+)$1	1	149	172	14.7530
(....(((........)))...)	chr5:180651108-180651379(+)$1	1	48	71	15.8792
(((.((((........)))).))	chr2:132044624-132044857(+)$1	1	185	208	14.7876
.(((..((........))..)))	chr17:7750927-7751192(+)$1	1	14	37	15.0234
((((((((........)))))))	chr19:49964732-49965002(+)$1	1	196	219	15.7409
((.(((((........))))).)	chr17:7476602-7476864(+)$1	1	47	70	14.0561
(..(((.(........))))..)	chr22:50018110-50018347(-)$1	1	36	59	15.7071
((((((((........)))))))	chrX:152938516-152938791(-)$1	1	106	129	15.7409
.((((.((........)).))))	chr22:19418893-19419223(-)$1	1	299	322	14.7530
...(((((........))))).)	chr2:113999252-113999548(+)$1	1	61	84	14.7278
((((((.(........).)))))	chr16:2867269-2867538(+)$1	1	174	197	15.0289
(((((..(........)..))))	chr17:7476695-7476920(+)$1	1	168	191	14.6937
(((..(((........)))..))	chr16:31044911-31045239(+)$1	1	155	178	15.6681
.(((((((........)))))))	chr11:47380054-47380343(-)$1	1	49	72	15.6607
(((((.((........)).))))	chr19:2270536-2270763(+)$1	1	185	208	14.6427
(((((.((........)).))))	chr15:38776734-38777058(+)$1	1	195	218	14.6427
(....(((........)))....	chr19:14267297-14267578(+)$1	1	146	169	16.0082
((((((.(........).)))))	chr20:57415148-57415480(-)$1	1	235	258	15.0289
..((((((........)))))).	chr12:112035449-112035706(-)$1	1	120	143	14.8461
(((..(((........)))))))	chr17:80708365-80708642(+)$1	1	112	135	15.7280
..((...(........)...)).	chr16:87735206-87735482(-)$1	1	83	106	14.7118
((((.(.(........).).)))	chr5:180651179-180651447(+)$1	1	118	141	15.2301
(((..(((........)))..))	chr15:80215404-80215649(-)$1	1	11	34	15.7713
((...(((........)))....	chr6:111136121-111136417(-)$1	1	96	119	15.7799
(((.((((........)))).))	chr16:4744323-4744564(+)$1	1	160	183	15.1291
.(((((((........)))))))	chr9:139904713-139904991(-)$1	1	123	146	14.6038
(.((((.(........).)))))	chr3:195621999-195622244(-)$1	1	50	73	15.1943
...(((((........)))))))	chr19:10407086-10407372(+)$1	1	6	29	14.6732
((((((((........))))...	chr22:50016888-50017149(-)$1	1	202	225	14.5712
((((.(((........))).)))	chr17:80676173-80676426(+)$1	1	135	158	15.5481

#PSSM
d : 0.14	f : 0.12	[ : 0.11	b : 0.09	c : 0.08	i : 0.08	e : 0.06	= : 0.04	a : 0.04	g : 0.04	# : 0.04	: : 0.03	" : 0.03	h : 0.01	! : 0.01	
d : 0.19	c : 0.11	f : 0.11	g : 0.09	e : 0.08	i : 0.08	# : 0.08	[ : 0.06	b : 0.06	! : 0.04	= : 0.03	" : 0.03	
d : 0.20	f : 0.19	c : 0.09	g : 0.09	e : 0.08	i : 0.08	! : 0.04	# : 0.04	" : 0.04	= : 0.03	b : 0.03	[ : 0.03	
f : 0.14	d : 0.12	! : 0.12	e : 0.12	g : 0.09	[ : 0.09	c : 0.08	i : 0.08	# : 0.04	b : 0.03	= : 0.01	" : 0.01	
d : 0.20	f : 0.14	! : 0.12	e : 0.12	[ : 0.09	g : 0.08	i : 0.08	c : 0.03	# : 0.03	" : 0.03	a : 0.01	= : 0.01	
c : 0.29	d : 0.16	f : 0.12	[ : 0.12	e : 0.08	i : 0.06	g : 0.04	a : 0.03	! : 0.03	= : 0.01	" : 0.01	
c : 0.25	d : 0.14	b : 0.14	[ : 0.12	f : 0.09	e : 0.06	i : 0.06	g : 0.04	= : 0.01	! : 0.01	" : 0.01	
c : 0.25	a : 0.16	d : 0.14	b : 0.14	f : 0.09	e : 0.06	i : 0.06	g : 0.04	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.25	a : 0.16	d : 0.14	b : 0.14	f : 0.09	e : 0.06	i : 0.06	g : 0.04	= : 0.01	
c : 0.27	d : 0.14	b : 0.14	] : 0.11	f : 0.09	e : 0.06	i : 0.06	g : 0.04	= : 0.01	2 : 0.01	3 : 0.01	
c : 0.29	d : 0.16	f : 0.12	] : 0.11	e : 0.08	i : 0.06	2 : 0.04	g : 0.04	a : 0.03	= : 0.01	3 : 0.01	
d : 0.22	f : 0.16	e : 0.12	] : 0.08	2 : 0.08	c : 0.06	g : 0.06	i : 0.06	= : 0.03	3 : 0.03	4 : 0.03	a : 0.01	b : 0.01	
f : 0.16	d : 0.14	e : 0.12	] : 0.09	2 : 0.08	g : 0.08	i : 0.08	c : 0.06	b : 0.04	4 : 0.04	= : 0.03	3 : 0.03	
f : 0.20	d : 0.19	c : 0.09	g : 0.08	e : 0.08	i : 0.08	2 : 0.04	] : 0.04	b : 0.04	4 : 0.04	= : 0.03	3 : 0.03	
d : 0.19	f : 0.12	g : 0.08	e : 0.08	i : 0.08	4 : 0.08	] : 0.06	2 : 0.06	b : 0.06	c : 0.06	= : 0.03	a : 0.03	3 : 0.01	m : 0.01	

#score	940.9615813286576
#seq	62
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_UTR_m3_run2.txt

#BEAR
"ddddqqqqqqqqdddd4	chr6:7899708-7899934(-)$1	226	25	43	14.2593
!ddddqqqqqqqqddddd	chr7:100858313-100858533(-)$1	220	187	205	14.1842
!ddddqqqqqqqqdddd5	chr7:100859088-100859298(-)$1	210	95	113	13.5945
fffffqqqqqqqqfffff	chr4:41951218-41951503(+)$1	285	150	168	13.1538
!!cccqqqqqqqqccc22	chr2:216230190-216230419(-)$1	229	132	150	14.1657
eeeeeqqqqqqqqeeeee	chr6:31237642-31237858(-)$1	216	62	80	14.6094
cddddqqqqqqqqdddd]	chr2:216230142-216230364(-)$1	222	128	146	14.2590
eeeeeqqqqqqqqeeeee	chr2:162877079-162877298(-)$1	219	16	34	14.6094
eeeeeqqqqqqqqeeeee	chr2:27000916-27001157(+)$1	241	123	141	14.6094
[ddddqqqqqqqqdddd]	chr7:100856288-100856504(-)$1	216	64	82	14.4304
[ddddqqqqqqqqdddd]	chr7:100856304-100856558(-)$1	254	118	136	14.4304
f!!bbqqqqqqqqbb22f	chr12:46754816-46755086(-)$1	270	46	64	12.6653
##cccqqqqqqqqccc44	chr14:95088693-95088901(+)$1	208	106	124	14.2334
cddddqqqqqqqqdddd]	chr2:162868370-162868597(-)$1	227	3	21	14.2590
[a[bbqqqqqqqqbb]ad	chr16:5125287-5125556(+)$1	269	112	130	12.9947
cc[bbqqqqqqqqbb]cc	chr17:79803365-79803585(-)$1	220	145	163	12.9384
gggggqqqqqqqqggggg	chr12:110765515-110765762(+)$1	247	188	206	13.8948
c[cccqqqqqqqqccc]c	chr17:76969025-76969258(-)$1	233	157	175	14.2804
fffffqqqqqqqqfffff	chr2:128877828-128878076(+)$1	248	226	244	13.1538
ccc[aqqqqqqqqaccc]	chr2:97373395-97373636(-)$1	241	162	180	13.8807
eeeeeqqqqqqqqeeeee	chr12:112460189-112460456(+)$1	267	28	46	14.6094
ddcccqqqqqqqqccc]d	chr1:1374573-1374853(+)$1	280	130	148	13.9965
fffffqqqqqqqqfffff	chr14:95088624-95088865(+)$1	241	39	57	13.1538
eeeeeqqqqqqqqeeeee	chr15:79227305-79227524(-)$1	219	189	207	14.6094
eeeeeqqqqqqqqeeeee	chr11:71146370-71146645(-)$1	275	50	68	14.6094
eeeeeqqqqqqqqeeeee	chr14:95085679-95085906(+)$1	227	122	140	14.6094
eeeeeqqqqqqqqeeeee	chr3:149093224-149093445(-)$1	221	69	87	14.6094
eeeeeqqqqqqqqeeeee	chr13:113795252-113795463(+)$1	211	96	114	14.6094
eeebbqqqqqqqqbb]ee	chr5:52358515-52358735(+)$1	220	137	155	13.5163
##cccqqqqqqqqccc44	chr14:95088701-95088909(+)$1	208	98	116	14.2334
eddddqqqqqqqqdddd:	chr17:76851822-76852047(-)$1	225	47	65	13.2539
cccccqqqqqqqqccc]c	chr6:31910646-31910881(+)$1	235	159	177	14.1069
bddddqqqqqqqqdddd]	chr7:95034658-95034901(-)$1	243	112	130	13.9467
""cccqqqqqqqqccc55	chr12:56119803-56120038(-)$1	235	174	192	12.7193
eeeeeqqqqqqqqeeeee	chr5:52356644-52356922(+)$1	278	239	257	14.6094
cddddqqqqqqqqdddd]	chr2:216230127-216230329(-)$1	202	93	111	14.2590
gggggqqqqqqqqggggg	chr12:58088514-58088767(+)$1	253	86	104	13.8948
eeeeeqqqqqqqqeeeee	chr15:79227244-79227500(-)$1	256	165	183	14.6094
d[a[aqqqqqqqqaaddd	chr14:54898745-54898996(-)$1	251	41	59	13.5181
iiiiiqqqqqqqqiiiii	chr3:170715937-170716180(-)$1	243	67	85	13.8008
=====qqqqqqqq=====	chr6:31912656-31912871(+)$1	215	81	99	14.0443
fffffqqqqqqqqfffff	chr16:16208607-16208899(+)$1	292	92	110	13.1538
[ddddqqqqqqqqdddd4	chr17:76967613-76967853(-)$1	240	55	73	14.3428
eeeeeqqqqqqqqeeeee	chr1:52489108-52489347(-)$1	239	159	177	14.6094
eddddqqqqqqqqdddd:	chr17:40847597-40847854(+)$1	257	206	224	13.2539
eeeeeqqqqqqqqeeeee	chr6:31901286-31901509(+)$1	223	60	78	14.6094
[ddddqqqqqqqqdddd]	chr11:62398474-62398738(-)$1	264	4	22	14.4304
gggggqqqqqqqqggggg	chr20:24944491-24944739(-)$1	248	187	205	13.8948
!!cccqqqqqqqqcccdd	chr20:34135062-34135281(+)$1	219	45	63	14.3807
eeeeeqqqqqqqqeeeee	chr12:112460142-112460389(+)$1	247	75	93	14.6094
fffffqqqqqqqqfffff	chr17:39977842-39978106(+)$1	264	7	25	13.1538
eeeeeqqqqqqqqeeeee	chr17:78190729-78190988(-)$1	259	131	149	14.6094
ee[bbqqqqqqqqbb]ee	chr20:23614346-23614599(-)$1	253	70	88	13.4347
h[cccqqqqqqqqccc]h	chr5:179150560-179150767(+)$1	207	153	171	13.9894
c[cccqqqqqqqqccc22	chr12:58089702-58089921(+)$1	219	187	205	13.9750
eeeeeqqqqqqqqeeeee	chr11:130003423-130003642(+)$1	219	131	149	14.6094
eeeeeqqqqqqqqeeeee	chr9:140001967-140002213(+)$1	246	68	86	14.6094
"ddddqqqqqqqqdddd]	chr4:69796781-69797021(-)$1	240	201	219	14.3469
!!cccqqqqqqqqccc]d	chr16:74506146-74506361(-)$1	215	60	78	14.4146
"""bbqqqqqqqqbb333	chr17:46133723-46133963(+)$1	240	79	97	13.1661
gggggqqqqqqqqggggg	chr12:46757606-46757808(-)$1	202	75	93	13.8948
eeeeeqqqqqqqqeeeee	chr5:179147304-179147537(+)$1	233	73	91	14.6094
!!cccqqqqqqqqccc]h	chr9:14746304-14746560(-)$1	256	220	238	14.3162
c!!bbqqqqqqqqbb]cc	chr2:70504309-70504535(+)$1	226	134	152	13.1272
gggggqqqqqqqqggggg	chr12:56119844-56120097(-)$1	253	6	24	13.8948
fffffqqqqqqqqfffff	chr16:57695507-57695766(+)$1	259	178	196	13.1538
h[cccqqqqqqqqccc]h	chr2:10924298-10924552(-)$1	254	94	112	13.9894
c[cccqqqqqqqqccccc	chr15:73995272-73995528(+)$1	256	216	234	14.1672
#ddddqqqqqqqqdddd4	chr19:15230189-15230427(-)$1	238	92	110	14.2199

#otherMatches

#Seq PSSM
AGCUUUUCAAGCCAGGCC	chr6:7899708-7899934(-)$1	226	25	43	14.2593
UGGGCGAUGCGCAGCCUC	chr7:100858313-100858533(-)$1	220	187	205	14.1842
GACCCAGGACUGAGGGUA	chr7:100859088-100859298(-)$1	210	95	113	13.5945
UUCGAUAUUCGUCUCGAA	chr4:41951218-41951503(+)$1	285	150	168	13.1538
GCCAGAUGAUGAGCUGCA	chr2:216230190-216230419(-)$1	229	132	150	14.1657
UAGCUGUCCUUGGAGCUG	chr6:31237642-31237858(-)$1	216	62	80	14.6094
GUGACCCUCGUAUGUCAU	chr2:216230142-216230364(-)$1	222	128	146	14.2590
UUGGACAGGACUUUCUAA	chr2:162877079-162877298(-)$1	219	16	34	14.6094
GCCGCUCAUUGCCGUGGC	chr2:27000916-27001157(+)$1	241	123	141	14.6094
ACGUGGCCUACGACACGC	chr7:100856288-100856504(-)$1	216	64	82	14.4304
ACGUGGCCUACGACACGC	chr7:100856304-100856558(-)$1	254	118	136	14.4304
AUAUAUGUUUUAUUACUU	chr12:46754816-46755086(-)$1	270	46	64	12.6653
CAGGGGCCAGGAACCUAG	chr14:95088693-95088901(+)$1	208	106	124	14.2334
GGAAGGAUGCAUACUUCU	chr2:162868370-162868597(-)$1	227	3	21	14.2590
UCUGCCUAGCAUUGCUGU	chr16:5125287-5125556(+)$1	269	112	130	12.9947
GACGGUGCGCCUUCCCUC	chr17:79803365-79803585(-)$1	220	145	163	12.9384
UGGCAAAGAAAAAUGCCA	chr12:110765515-110765762(+)$1	247	188	206	13.8948
ACCAUGAGUGUGGAUGCU	chr17:76969025-76969258(-)$1	233	157	175	14.2804
UGGCCUACUUUUUGGCUA	chr2:128877828-128878076(+)$1	248	226	244	13.1538
UGGACAAUAUGAAGCUGC	chr2:97373395-97373636(-)$1	241	162	180	13.8807
AGGGGCAAGAUAACCUCU	chr12:112460189-112460456(+)$1	267	28	46	14.6094
UGAGGCCCCAGAUCCUGC	chr1:1374573-1374853(+)$1	280	130	148	13.9965
UUCUCGUUUUCUAGAGAG	chr14:95088624-95088865(+)$1	241	39	57	13.1538
ACCUGUGAAAAAUCAGGU	chr15:79227305-79227524(-)$1	219	189	207	14.6094
CUGCCUGGCCUGUGGCGG	chr11:71146370-71146645(-)$1	275	50	68	14.6094
UCAGGUGAUUCUUCCUGG	chr14:95085679-95085906(+)$1	227	122	140	14.6094
GAUGCUUUCUUCUGUAUU	chr3:149093224-149093445(-)$1	221	69	87	14.6094
GCCUGCAUUCCCACAGGU	chr13:113795252-113795463(+)$1	211	96	114	14.6094
AUGUGGAUAAAGACACCA	chr5:52358515-52358735(+)$1	220	137	155	13.5163
CAGGGGCCAGGAACCUAG	chr14:95088701-95088909(+)$1	208	98	116	14.2334
GCCCACCCCUUCCUGGGU	chr17:76851822-76852047(-)$1	225	47	65	13.2539
GGAUGGUGAGAGGCAUGC	chr6:31910646-31910881(+)$1	235	159	177	14.1069
CCAGAACAUUCUAUCUGA	chr7:95034658-95034901(-)$1	243	112	130	13.9467
AAUGUUUUAGAAUGCAAG	chr12:56119803-56120038(-)$1	235	174	192	12.7193
UCACUGUUUAGCAGGUGA	chr5:52356644-52356922(+)$1	278	239	257	14.6094
GUGACCCUCGUAUGUCAU	chr2:216230127-216230329(-)$1	202	93	111	14.2590
UGGAGCUAUUCACUUCCA	chr12:58088514-58088767(+)$1	253	86	104	13.8948
ACCUGUGAAAAAUCAGGU	chr15:79227244-79227500(-)$1	256	165	183	14.6094
UUGUGUUUUCCUUCCAGC	chr14:54898745-54898996(-)$1	251	41	59	13.5181
CCAGGCCCGAUCCCCUGG	chr3:170715937-170716180(-)$1	243	67	85	13.8008
UGUCACCCUUUGCUGGCA	chr6:31912656-31912871(+)$1	215	81	99	14.0443
CUGCACAGCAUCCUGCGG	chr16:16208607-16208899(+)$1	292	92	110	13.1538
UGGAAGGCUGCGAUUCCC	chr17:76967613-76967853(-)$1	240	55	73	14.3428
GUAUUUUUAUGUCAGUGC	chr1:52489108-52489347(-)$1	239	159	177	14.6094
CAGCUUCAGCACCAGCUC	chr17:40847597-40847854(+)$1	257	206	224	13.2539
AGGGGGCUACUCACCUCU	chr6:31901286-31901509(+)$1	223	60	78	14.6094
gaaaaUUGCUACUUUUUG	chr11:62398474-62398738(-)$1	264	4	22	14.4304
UGGUGGCCACCUACAUCA	chr20:24944491-24944739(-)$1	248	187	205	13.8948
CCGAUUUCACUGUGUCUG	chr20:34135062-34135281(+)$1	219	45	63	14.3807
AGGGGCAAGAUAACCUCU	chr12:112460142-112460389(+)$1	247	75	93	14.6094
AGGCCCAGACCCCGGCCU	chr17:39977842-39978106(+)$1	264	7	25	13.1538
GCCAGCCUCCUCACUGGC	chr17:78190729-78190988(-)$1	259	131	149	14.6094
GCCUAUCACCUCUUAUGC	chr20:23614346-23614599(-)$1	253	70	88	13.4347
GGUAGUCUAUAUUCUAAC	chr5:179150560-179150767(+)$1	207	153	171	13.9894
AGGGUCAAGAUUAGCUGA	chr12:58089702-58089921(+)$1	219	187	205	13.9750
GGAGGAACCAAAGCCUCU	chr11:130003423-130003642(+)$1	219	131	149	14.6094
CCUGUACCGCGUCACAGG	chr9:140001967-140002213(+)$1	246	68	86	14.6094
AUGUUAAACAGCAAGCAA	chr4:69796781-69797021(-)$1	240	201	219	14.3469
AAUAGAAGCCUUGCUGAU	chr16:74506146-74506361(-)$1	215	60	78	14.4146
GUGAGGUUUUUGACUAUA	chr17:46133723-46133963(+)$1	240	79	97	13.1661
UCUUCCCAUCUAUGAAGA	chr12:46757606-46757808(-)$1	202	75	93	13.8948
UAUAAUUUGUUGUUUGUA	chr5:179147304-179147537(+)$1	233	73	91	14.6094
CUAUUGCACAUUUGAUUG	chr9:14746304-14746560(-)$1	256	220	238	14.3162
CUUGCCUAUCACCGCUGG	chr2:70504309-70504535(+)$1	226	134	152	13.1272
AGGUUCACUUAACAACCU	chr12:56119844-56120097(-)$1	253	6	24	13.8948
CCAUGCUAGCCACCAUGG	chr16:57695507-57695766(+)$1	259	178	196	13.1538
UCCCAGCUUCCCGUGGAG	chr2:10924298-10924552(-)$1	254	94	112	13.9894
GAGCUCCGAAUCUGGCCC	chr15:73995272-73995528(+)$1	256	216	234	14.1672
UCGCUCCAGGUUCAGCGC	chr19:15230189-15230427(-)$1	238	92	110	14.2199

#DB
.((((........)))).	chr6:7899708-7899934(-)$1	1	25	43	14.2593
.((((........)))))	chr7:100858313-100858533(-)$1	1	187	205	14.1842
.((((........)))).	chr7:100859088-100859298(-)$1	1	95	113	13.5945
(((((........)))))	chr4:41951218-41951503(+)$1	1	150	168	13.1538
..(((........)))..	chr2:216230190-216230419(-)$1	1	132	150	14.1657
(((((........)))))	chr6:31237642-31237858(-)$1	1	62	80	14.6094
(((((........)))).	chr2:216230142-216230364(-)$1	1	128	146	14.2590
(((((........)))))	chr2:162877079-162877298(-)$1	1	16	34	14.6094
(((((........)))))	chr2:27000916-27001157(+)$1	1	123	141	14.6094
.((((........)))).	chr7:100856288-100856504(-)$1	1	64	82	14.4304
.((((........)))).	chr7:100856304-100856558(-)$1	1	118	136	14.4304
(..((........))..)	chr12:46754816-46755086(-)$1	1	46	64	12.6653
..(((........)))..	chr14:95088693-95088901(+)$1	1	106	124	14.2334
(((((........)))).	chr2:162868370-162868597(-)$1	1	3	21	14.2590
.(.((........)).))	chr16:5125287-5125556(+)$1	1	112	130	12.9947
((.((........)).))	chr17:79803365-79803585(-)$1	1	145	163	12.9384
(((((........)))))	chr12:110765515-110765762(+)$1	1	188	206	13.8948
(.(((........))).)	chr17:76969025-76969258(-)$1	1	157	175	14.2804
(((((........)))))	chr2:128877828-128878076(+)$1	1	226	244	13.1538
(((.(........)))).	chr2:97373395-97373636(-)$1	1	162	180	13.8807
(((((........)))))	chr12:112460189-112460456(+)$1	1	28	46	14.6094
(((((........))).)	chr1:1374573-1374853(+)$1	1	130	148	13.9965
(((((........)))))	chr14:95088624-95088865(+)$1	1	39	57	13.1538
(((((........)))))	chr15:79227305-79227524(-)$1	1	189	207	14.6094
(((((........)))))	chr11:71146370-71146645(-)$1	1	50	68	14.6094
(((((........)))))	chr14:95085679-95085906(+)$1	1	122	140	14.6094
(((((........)))))	chr3:149093224-149093445(-)$1	1	69	87	14.6094
(((((........)))))	chr13:113795252-113795463(+)$1	1	96	114	14.6094
(((((........)).))	chr5:52358515-52358735(+)$1	1	137	155	13.5163
..(((........)))..	chr14:95088701-95088909(+)$1	1	98	116	14.2334
)((((........)))).	chr17:76851822-76852047(-)$1	1	47	65	13.2539
(((((........))).)	chr6:31910646-31910881(+)$1	1	159	177	14.1069
(((((........)))).	chr7:95034658-95034901(-)$1	1	112	130	13.9467
..(((........)))..	chr12:56119803-56120038(-)$1	1	174	192	12.7193
(((((........)))))	chr5:52356644-52356922(+)$1	1	239	257	14.6094
(((((........)))).	chr2:216230127-216230329(-)$1	1	93	111	14.2590
(((((........)))))	chr12:58088514-58088767(+)$1	1	86	104	13.8948
(((((........)))))	chr15:79227244-79227500(-)$1	1	165	183	14.6094
(.(.(........)))))	chr14:54898745-54898996(-)$1	1	41	59	13.5181
(((((........)))))	chr3:170715937-170716180(-)$1	1	67	85	13.8008
(((((........)))))	chr6:31912656-31912871(+)$1	1	81	99	14.0443
(((((........)))))	chr16:16208607-16208899(+)$1	1	92	110	13.1538
.((((........)))).	chr17:76967613-76967853(-)$1	1	55	73	14.3428
(((((........)))))	chr1:52489108-52489347(-)$1	1	159	177	14.6094
)((((........)))).	chr17:40847597-40847854(+)$1	1	206	224	13.2539
(((((........)))))	chr6:31901286-31901509(+)$1	1	60	78	14.6094
.((((........)))).	chr11:62398474-62398738(-)$1	1	4	22	14.4304
(((((........)))))	chr20:24944491-24944739(-)$1	1	187	205	13.8948
..(((........)))))	chr20:34135062-34135281(+)$1	1	45	63	14.3807
(((((........)))))	chr12:112460142-112460389(+)$1	1	75	93	14.6094
(((((........)))))	chr17:39977842-39978106(+)$1	1	7	25	13.1538
(((((........)))))	chr17:78190729-78190988(-)$1	1	131	149	14.6094
((.((........)).))	chr20:23614346-23614599(-)$1	1	70	88	13.4347
(.(((........))).)	chr5:179150560-179150767(+)$1	1	153	171	13.9894
(.(((........)))..	chr12:58089702-58089921(+)$1	1	187	205	13.9750
(((((........)))))	chr11:130003423-130003642(+)$1	1	131	149	14.6094
(((((........)))))	chr9:140001967-140002213(+)$1	1	68	86	14.6094
.((((........)))).	chr4:69796781-69797021(-)$1	1	201	219	14.3469
..(((........))).)	chr16:74506146-74506361(-)$1	1	60	78	14.4146
...((........))...	chr17:46133723-46133963(+)$1	1	79	97	13.1661
(((((........)))))	chr12:46757606-46757808(-)$1	1	75	93	13.8948
(((((........)))))	chr5:179147304-179147537(+)$1	1	73	91	14.6094
..(((........))).)	chr9:14746304-14746560(-)$1	1	220	238	14.3162
(..((........)).))	chr2:70504309-70504535(+)$1	1	134	152	13.1272
(((((........)))))	chr12:56119844-56120097(-)$1	1	6	24	13.8948
(((((........)))))	chr16:57695507-57695766(+)$1	1	178	196	13.1538
(.(((........))).)	chr2:10924298-10924552(-)$1	1	94	112	13.9894
(.(((........)))))	chr15:73995272-73995528(+)$1	1	216	234	14.1672
.((((........)))).	chr19:15230189-15230427(-)$1	1	92	110	14.2199

#PSSM
e : 0.31	c : 0.14	f : 0.10	! : 0.08	[ : 0.07	g : 0.07	" : 0.05	# : 0.04	d : 0.02	h : 0.02	b : 0.01	i : 0.01	= : 0.01	
e : 0.28	d : 0.23	f : 0.08	! : 0.08	[ : 0.08	g : 0.07	c : 0.04	# : 0.02	" : 0.02	a : 0.01	i : 0.01	= : 0.01	
e : 0.27	d : 0.21	c : 0.21	f : 0.08	g : 0.07	[ : 0.04	! : 0.02	a : 0.01	i : 0.01	= : 0.01	" : 0.01	
e : 0.26	d : 0.21	c : 0.20	b : 0.10	f : 0.08	g : 0.07	[ : 0.02	i : 0.01	= : 0.01	
e : 0.26	d : 0.21	c : 0.20	b : 0.10	f : 0.08	g : 0.07	a : 0.02	i : 0.01	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.26	d : 0.21	c : 0.20	b : 0.10	f : 0.08	g : 0.07	a : 0.02	i : 0.01	= : 0.01	
e : 0.26	d : 0.21	c : 0.21	b : 0.10	f : 0.08	g : 0.07	a : 0.01	i : 0.01	= : 0.01	
e : 0.26	d : 0.23	c : 0.21	f : 0.08	] : 0.07	g : 0.07	2 : 0.01	i : 0.01	= : 0.01	3 : 0.01	
e : 0.28	d : 0.24	] : 0.10	f : 0.08	g : 0.07	c : 0.05	2 : 0.04	4 : 0.02	a : 0.01	5 : 0.01	i : 0.01	= : 0.01	3 : 0.01	
e : 0.28	] : 0.13	f : 0.10	d : 0.08	4 : 0.07	c : 0.07	g : 0.07	h : 0.04	5 : 0.02	2 : 0.02	: : 0.02	i : 0.01	= : 0.01	3 : 0.01	

#score	966.8940214958221
#seq	69
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_UTR_m2_run1.txt

#BEAR
f[eeeeeddddbboooooobb]dddd22eeeee]	chr19:42751773-42752020(-)$1	247	82	116	10.5458
JJ:iiiiiiiii[annnnna]iiiiiiiiigggg	chr6:30710344-30710581(-)$1	237	117	151	10.8327
eeee!!bb[ccc[annnnna]ccc]bb22eeeee	chr17:33416031-33416305(-)$1	274	82	116	12.5256
iiiiiiiii[cccooooooccc]iiiiiiiii33	chr3:197024613-197024855(-)$1	242	109	143	12.7711
[a[ggggggg[a[aooooooa]a]ggggggga]e	chr16:87426130-87426483(+)$1	353	307	341	12.7888
h[ccc!!ccc[cccnnnnnccc]ccc]ccchhhh	chr20:62371148-62371379(+)$1	231	111	145	12.8087
c!!a[gggggggaooooooa]ggggggga22ccc	chr19:41770823-41771081(+)$1	258	58	92	12.0626
ggg[a[eeeee[bbnnnnnbb22eeeeeaggggg	chr19:50815984-50816227(-)$1	243	195	229	14.2820
eeee!!a[ccc[bbnnnnnbb]ccc]a]eeeee:	chr16:53164995-53165225(+)$1	230	194	228	13.8791
a[ccc[dddd!!aooooooa22dddd]ccc]a55	chr7:77166705-77166977(+)$1	272	112	146	10.7565
ggggg!!dddd[bbnnnnnbb]dddd]ggggggg	chr13:45914973-45915237(-)$1	264	156	190	14.4815
G===============lll===============	chr20:307892-308149(+)$1	257	64	98	11.6323
[bb!!bb[ccc[bbnnnnnbbcccbb22bb333e	chr20:62338443-62338694(-)$1	251	170	204	12.4241
ccc[hhhhhhhhbbnnnnnbb]hhhhhhhh]ccc	chr17:27073901-27074153(+)$1	252	167	201	12.9618
eee[ddddaccc[allla]ccc]a]dddd333ee	chr3:37903470-37903736(+)$1	266	95	129	10.8358
ddd!!ffffff[bbnnnnnbb]ffffffdddd:H	chr20:361761-362018(+)$1	257	141	175	10.7854
!dddd"""a[a[bbnnnnnbb]a]adddd22ccc	chr16:30537681-30537930(-)$1	249	80	114	14.0844
ddd[ggggggg[bbnnnnnbb22gggggggdddd	chr5:74162044-74162300(-)$1	256	196	230	14.5867
fff[dddd[eeeeennnnneeeee]dddd]ffff	chr5:176873479-176873825(-)$1	346	37	71	10.4684
e[a[eeeee"""bbnnnnnbb]eeeee]a]eeee	chr17:53499130-53499382(-)$1	252	212	246	14.7912
[aeeeee[ccc!!bblllbb22ccc]eeeee]a]	chr9:99381561-99381829(-)$1	268	192	226	10.9844
fff[eeeee"""bbnnnnnbb333eeeeefffff	chr19:2426027-2426270(-)$1	243	170	204	13.7066
adddda[eeeee!!ammmma22eeeee]a]dddd	chr8:11725101-11725348(-)$1	247	112	146	9.0138
====ggggggg!!annnnna22ggggggg]====	chr12:58005524-58005834(+)$1	310	158	192	15.5437
a[dddd[bb[ddddnnnnndddd]bbdddd]acc	chr19:1585104-1585373(-)$1	269	113	147	10.3894
""ccc[ffffff!!ammmma22ffffff]cccdd	chr7:5446892-5447180(-)$1	288	226	260	8.8127
!ccc[dddd"""bbnnnnnbb333ddddccc]dd	chr2:202001718-202002047(+)$1	329	169	203	14.4553
ggggccc[ccc[bboooooobbccc]cccfffff	chr20:62367799-62368102(+)$1	303	29	63	11.2455
d!!bb[bb[ccc[annnnna]ccc]bb]bb]ddd	chr12:131356575-131356818(+)$1	243	204	238	11.7592
eeeeggggggg!!bblllbb333ggggggg333e	chr22:45608233-45608518(-)$1	285	242	276	12.2697
cccc[ccc[cccbboooooobb]ccc]ccc]ccc	chr1:182360594-182360836(-)$1	242	60	94	11.7532
hhhhhhhh[bb[bbnnnnnbb]bbhhhhhhhh]a	chr1:155947805-155948094(-)$1	289	174	208	12.0898
=====dddd[a[bbnnnnnbb]a]dddd:eeeee	chr9:139743354-139743613(+)$1	259	141	175	13.6845
e[ggggggg"""bbmmmmbb22ggggggg22eee	chr10:88853741-88853980(-)$1	239	167	201	11.3911
eeeeeeeeeecccnnnnnccc333eeeee]eeee	chr1:235812961-235813248(-)$1	287	44	78	11.6602
b[bb[ggggggg[annnnna]ggggggg]bbbb:	chr3:186502077-186502320(+)$1	243	24	58	11.5149
[ccc[ccc!!bboooooobb22ccc]ccc]bb]a	chr9:80646039-80646327(-)$1	288	200	234	10.2638
e[ccc"""a[ddddnnnnndddda22ccceeeee	chr2:161263949-161264249(-)$1	300	29	63	11.5416
"""eeeee####bbnnnnnbb22eeeee]bb333	chr3:33481595-33481861(-)$1	266	89	123	13.6802
eeeee[dddd[cccnnnnnccc]dddd]eeeee3	chr3:184033015-184033278(+)$1	263	61	95	12.6197
dddhhhhhhhh[bbnnnnnbb]hhhhhhhh22dd	chr17:79880987-79881242(-)$1	255	119	153	12.4934
ccc[ffffff!!bbmmmmbb22ffffffccc]ee	chr20:57267787-57268055(+)$1	268	184	218	9.3761
[dddd####ccc[allla]cccdddd]hhhhhhh	chr3:98620115-98620419(-)$1	304	184	218	9.4782
=========[ddddnnnnndddd22=========	chr19:55899450-55899724(+)$1	274	46	80	12.7121
eeeeedddd!!cccnnnnncccdddd]eeeee33	chr17:38334121-38334368(+)$1	247	151	185	12.5622
%%a[===========lll===========]a666	chr20:57467330-57467613(+)$1	283	186	220	9.5376
iiiiiii!!eeeeennnnneeeee22iiiiiiii	chr16:67231975-67232212(+)$1	237	99	133	11.9483
ffbb[a[a[bb[bboooooobb]bb]a]a]bb]f	chr1:38274022-38274309(+)$1	287	189	223	9.9207
:iiiiiiiii[ccclllccc22iiiiiiiiiddd	chr7:5085632-5085913(+)$1	281	27	61	10.5461
e[dddd[bb[cccoooooocccbb]dddd]eeee	chr17:79860506-79860775(-)$1	269	60	94	10.3161
eeeeedddd[a!!annnnna22a]dddd333eee	chr4:981993-982246(-)$1	253	157	191	14.2111

#otherMatches

#Seq PSSM
AGCUGCUCCUAGGACUGGCCCAUGGGCAGGCGGG	chr19:42751773-42752020(-)$1	247	82	116	10.5458
GCGUCUGCCGCAGCAACGGGGUGCGGCAGGGUGG	chr6:30710344-30710581(-)$1	237	117	151	10.8327
CGGAGUCCGCAGCCUCCCUGCCUGAGGCGUCCGC	chr17:33416031-33416305(-)$1	274	82	116	12.5256
GGCCGGGCUGGGGAGCUGCUCCGAGUCUGGCCGG	chr3:197024613-197024855(-)$1	242	109	143	12.7711
CGCAAGCGCGCUGCGGGCGAGGGUCGCGCUUCUG	chr16:87426130-87426483(+)$1	353	307	341	12.7888
ccggccauggagcgccccccgccccgcgccgccg	chr20:62371148-62371379(+)$1	231	111	145	12.8087
UGACACUCAGUGCAGGGGGGACACUGGGGGAGGG	chr19:41770823-41771081(+)$1	258	58	92	12.0626
CCCUGACCUUCACGAAAGCCGAAGGAGGCGGGGA	chr19:50815984-50816227(-)$1	243	195	229	14.2820
CGCGAGAGUCAGCGAGCGGCGGUGAGUACGUGCA	chr16:53164995-53165225(+)$1	230	194	228	13.8791
cgggcggcgggggggccAGCGACCGCAGCCGGGG	chr7:77166705-77166977(+)$1	272	112	146	10.7565
CCGGCGGUCUUAGCCGAGCGCGGAGGGGUCGGUG	chr13:45914973-45915237(-)$1	264	156	190	14.4815
CUGCGCCCCUCCCUUCCCUGGGGGGAGGGGCGCA	chr20:307892-308149(+)$1	257	64	98	11.6323
acugaccaccguggagaagcccgggggaggggag	chr20:62338443-62338694(-)$1	251	170	204	12.4241
GGGGAAGUAGAGCCCCUCAGGCCUCUGCUUGCCC	chr17:27073901-27074153(+)$1	252	167	201	12.9618
gggcgcgcccAGGCAGCGGCUGCGAgcgcccccc	chr3:37903470-37903736(+)$1	266	95	129	10.8358
CGUCUGCGUGUUGCCGCGUGUUACACGCACGCAC	chr20:361761-362018(+)$1	257	141	175	10.7854
GUCCCCUGGGCGGCGCUGAGCGGGCGGGAGGCGG	chr16:30537681-30537930(-)$1	249	80	114	14.0844
CUGUGCGGCCUGGGACCGGCCGGAGGUCGCCAGC	chr5:74162044-74162300(-)$1	256	196	230	14.5867
CGUACACGGCGGGUGCUGAGCCCGGCGUGCGCGC	chr5:176873479-176873825(-)$1	346	37	71	10.4684
UCCGCUGGACACGCAGGCGGCCUCCGGAGCAGCC	chr17:53499130-53499382(-)$1	252	212	246	14.7912
GUCGAGCUGGGCCGCCGCGCCCCCCUGCUCGCGG	chr9:99381561-99381829(-)$1	268	192	226	10.9844
CAGUCACGUGGUGGUCACUCCUGGAUGUGCUGUC	chr19:2426027-2426270(-)$1	243	170	204	13.7066
CGCCGGACCCCGGCCCUCGGAGCGGGGACGCGGC	chr8:11725101-11725348(-)$1	247	112	146	9.0138
GGGGGGGCACAAAGGGGGUCGCUGUGCCUGUCCC	chr12:58005524-58005834(+)$1	310	158	192	15.5437
ggggucuggggUCCGCCCGGGGCGCCGACCGUCC	chr19:1585104-1585373(-)$1	269	113	147	10.3894
UGAUCUGGGCUGGUGGCUACUGCAGUCUUGGUCC	chr7:5446892-5447180(-)$1	288	226	260	8.8127
AGGUGCCCUAUAGGAGAAGCCAGGAGGGGCCGUC	chr2:202001718-202002047(+)$1	329	169	203	14.4553
GAGUUAGGCUGUCAGAACAGUGCGGGCUAGAGGC	chr20:62367799-62368102(+)$1	303	29	63	11.2455
cagcgggcggcugaguagguggguggugcgggcc	chr12:131356575-131356818(+)$1	243	204	238	11.7592
GCUGCUGAUUCAUCCCCAGGCUGGAGUCAGGCUC	chr22:45608233-45608518(-)$1	285	242	276	12.2697
CGCGCCGCCCCUGCUACCCCGCGAGGCGCGCCGC	chr1:182360594-182360836(-)$1	242	60	94	11.7532
gcUUGGUCGCCUCCAAGCCGGCGGGACCGAGUGC	chr1:155947805-155948094(-)$1	289	174	208	12.0898
CUUCGGACUACGUGCGGGACAGGAGGUCAGGGCU	chr9:139743354-139743613(+)$1	259	141	175	13.6845
CUGCACCGGUCUCCUUUUGGUCCCGGUGUCUGUG	chr10:88853741-88853980(-)$1	239	167	201	11.3911
GGGCCGGGGGAGGGUCCGCCUGCGCCCCCAGGCC	chr1:235812961-235813248(-)$1	287	44	78	11.6602
CUGCUUUAGCUUGUGCAGGGGAGGCUAACGUGCU	chr3:186502077-186502320(+)$1	243	24	58	11.5149
UGCUGCCUGAGCGAGGAGGCCAAGGAAGCCCGGC	chr9:80646039-80646327(-)$1	288	200	234	10.2638
GAGGGGAAGUCAGCGCGGAGCUGCAgcccccgcc	chr2:161263949-161264249(-)$1	300	29	63	11.5416
AAGGCUUGGGGGCGGGUGACGGGCGGGCGGAGGG	chr3:33481595-33481861(-)$1	266	89	123	13.6802
CCCGGCGGCAGGCGUAUCCUGUGUGCCCCUGGGC	chr3:184033015-184033278(+)$1	263	61	95	12.6197
CUCCAGGGUACUGACCUGCUCCGUGUCUUGCAGA	chr17:79880987-79881242(-)$1	255	119	153	12.4934
CUGCAGUUCCAGGCGAGCGCGGGGGACUCGGACC	chr20:57267787-57268055(+)$1	268	184	218	9.3761
GCGGCCAGAGGCGCGCGGGGCUGCCGAGGCACCC	chr3:98620115-98620419(-)$1	304	184	218	9.4782
GGGCUGGAGAGGGAUGGAUUCUUGCUUUCAGCCU	chr19:55899450-55899724(+)$1	274	46	80	12.7121
GCAGCGGCGUCAGAGCGUGUCUCGCCUGCUGCUC	chr17:38334121-38334368(+)$1	247	151	185	12.5622
AGUGGGGGGGCUGGUGACAUCAGCCCCUCGGAAA	chr20:57467330-57467613(+)$1	283	186	220	9.5376
GGGGUUGCCUGGGGACCUCUCCCACCCGACCCCU	chr16:67231975-67232212(+)$1	237	99	133	11.9483
CGGCGUGGACCGCGGGAAGGCGGGGCUGGGGCUC	chr1:38274022-38274309(+)$1	287	189	223	9.9207
AGGCUUGAGCGGGGACCCCCGAGCUUGAGCCCCG	chr7:5085632-5085913(+)$1	281	27	61	10.5461
UGGGGCGCCAUCCCGCGCCGGAGGGGCCUGGGGU	chr17:79860506-79860775(-)$1	269	60	94	10.3161
AGGGUGCUGUGACCGAUGAGACCUCAGCUCAGCC	chr4:981993-982246(-)$1	253	157	191	14.2111

#DB
(.(((((((((((......)).))))..))))).	chr19:42751773-42752020(-)$1	1	82	116	10.5458
((.(((((((((.(.....).)))))))))((((	chr6:30710344-30710581(-)$1	1	117	151	10.8327
((((..((.(((.(.....).))).))..)))))	chr17:33416031-33416305(-)$1	1	82	116	12.5256
(((((((((.(((......))).)))))))))..	chr3:197024613-197024855(-)$1	1	109	143	12.7711
.(.(((((((.(.(......).).)))))))).)	chr16:87426130-87426483(+)$1	1	307	341	12.7888
(.(((..(((.(((.....))).))).)))))))	chr20:62371148-62371379(+)$1	1	111	145	12.8087
(..(.((((((((......).))))))))..)))	chr19:41770823-41771081(+)$1	1	58	92	12.0626
(((.(.(((((.((.....))..)))))))))))	chr19:50815984-50816227(-)$1	1	195	229	14.2820
((((..(.(((.((.....)).))).).))))).	chr16:53164995-53165225(+)$1	1	194	228	13.8791
(.(((.((((..(......)..)))).))).)..	chr7:77166705-77166977(+)$1	1	112	146	10.7565
(((((..((((.((.....)).)))).)))))))	chr13:45914973-45915237(-)$1	1	156	190	14.4815
((((((((((((((((...)))))))))))))))	chr20:307892-308149(+)$1	1	64	98	11.6323
.((..((.(((.((.....)))))))..))...)	chr20:62338443-62338694(-)$1	1	170	204	12.4241
(((.((((((((((.....)).)))))))).)))	chr17:27073901-27074153(+)$1	1	167	201	12.9618
(((.((((((((.(...).))).).))))...))	chr3:37903470-37903736(+)$1	1	95	129	10.8358
(((..((((((.((.....)).)))))))))).)	chr20:361761-362018(+)$1	1	141	175	10.7854
.((((...(.(.((.....)).).)))))..)))	chr16:30537681-30537930(-)$1	1	80	114	14.0844
(((.(((((((.((.....))..)))))))))))	chr5:74162044-74162300(-)$1	1	196	230	14.5867
(((.((((.(((((.....))))).)))).))))	chr5:176873479-176873825(-)$1	1	37	71	10.4684
(.(.(((((...((.....)).))))).).))))	chr17:53499130-53499382(-)$1	1	212	246	14.7912
.((((((.(((..((...))..))).))))).).	chr9:99381561-99381829(-)$1	1	192	226	10.9844
(((.(((((...((.....))...))))))))))	chr19:2426027-2426270(-)$1	1	170	204	13.7066
((((((.(((((..(....)..))))).).))))	chr8:11725101-11725348(-)$1	1	112	146	9.0138
(((((((((((..(.....)..))))))).))))	chr12:58005524-58005834(+)$1	1	158	192	15.5437
(.((((.((.((((.....)))).)))))).)))	chr19:1585104-1585373(-)$1	1	113	147	10.3894
..(((.((((((..(....)..)))))).)))))	chr7:5446892-5447180(-)$1	1	226	260	8.8127
.(((.((((...((.....))...))))))).))	chr2:202001718-202002047(+)$1	1	169	203	14.4553
))))(((.(((.((......))))).)))(((((	chr20:62367799-62368102(+)$1	1	29	63	11.2455
(..((.((.(((.(.....).))).)).)).)))	chr12:131356575-131356818(+)$1	1	204	238	11.7592
(((((((((((..((...))...)))))))...)	chr22:45608233-45608518(-)$1	1	242	276	12.2697
)(((.(((.(((((......)).))).))).)))	chr1:182360594-182360836(-)$1	1	60	94	11.7532
((((((((.((.((.....)).)))))))))).)	chr1:155947805-155948094(-)$1	1	174	208	12.0898
)))))((((.(.((.....)).).)))).(((((	chr9:139743354-139743613(+)$1	1	141	175	13.6845
(.(((((((...((....))..)))))))..)))	chr10:88853741-88853980(-)$1	1	167	201	11.3911
(((((((((((((.....)))...))))).))))	chr1:235812961-235813248(-)$1	1	44	78	11.6602
(.((.(((((((.(.....).))))))).)))).	chr3:186502077-186502320(+)$1	1	24	58	11.5149
.(((.(((..((......))..))).))).)).)	chr9:80646039-80646327(-)$1	1	200	234	10.2638
(.(((...(.((((.....)))))..))))))))	chr2:161263949-161264249(-)$1	1	29	63	11.5416
...(((((....((.....))..))))).))...	chr3:33481595-33481861(-)$1	1	89	123	13.6802
(((((.((((.(((.....))).)))).))))).	chr3:184033015-184033278(+)$1	1	61	95	12.6197
(((((((((((.((.....)).))))))))..))	chr17:79880987-79881242(-)$1	1	119	153	12.4934
(((.((((((..((....))..))))))))).))	chr20:57267787-57268055(+)$1	1	184	218	9.3761
.((((....(((.(...).))))))).)))))))	chr3:98620115-98620419(-)$1	1	184	218	9.4782
(((((((((.((((.....))))..)))))))))	chr19:55899450-55899724(+)$1	1	46	80	12.7121
(((((((((..(((.....))))))).)))))..	chr17:38334121-38334368(+)$1	1	151	185	12.5622
..(.(((((((((((...))))))))))).)...	chr20:57467330-57467613(+)$1	1	186	220	9.5376
(((((((..(((((.....)))))..))))))))	chr16:67231975-67232212(+)$1	1	99	133	11.9483
((((.(.(.((.((......)).)).).).)).)	chr1:38274022-38274309(+)$1	1	189	223	9.9207
.(((((((((.(((...)))..)))))))))(((	chr7:5085632-5085913(+)$1	1	27	61	10.5461
(.((((.((.(((......))))).)))).))))	chr17:79860506-79860775(-)$1	1	60	94	10.3161
(((((((((.(..(.....)..).))))...)))	chr4:981993-982246(-)$1	1	157	191	14.2111

#PSSM
e : 0.23	[ : 0.09	f : 0.07	c : 0.07	d : 0.07	g : 0.05	a : 0.05	= : 0.05	i : 0.03	h : 0.03	! : 0.03	" : 0.03	J : 0.01	G : 0.01	b : 0.01	% : 0.01	: : 0.01	
[ : 0.17	e : 0.15	d : 0.11	c : 0.09	= : 0.07	i : 0.05	g : 0.05	f : 0.05	a : 0.03	! : 0.03	" : 0.03	J : 0.01	b : 0.01	h : 0.01	% : 0.01	
e : 0.19	c : 0.17	d : 0.15	g : 0.07	= : 0.07	i : 0.05	b : 0.05	! : 0.03	f : 0.03	a : 0.03	: : 0.01	[ : 0.01	h : 0.01	" : 0.01	
e : 0.19	[ : 0.17	c : 0.13	d : 0.09	i : 0.07	g : 0.07	= : 0.07	b : 0.05	! : 0.03	h : 0.03	a : 0.01	
e : 0.17	d : 0.13	g : 0.11	[ : 0.11	c : 0.09	i : 0.07	! : 0.07	= : 0.07	h : 0.05	a : 0.01	b : 0.01	f : 0.01	
d : 0.15	g : 0.13	e : 0.11	[ : 0.09	i : 0.07	! : 0.07	= : 0.05	h : 0.05	c : 0.05	f : 0.03	" : 0.03	a : 0.03	b : 0.01	# : 0.01	
d : 0.15	e : 0.13	g : 0.13	i : 0.07	[ : 0.07	b : 0.05	= : 0.05	h : 0.05	f : 0.05	c : 0.05	! : 0.03	" : 0.03	a : 0.01	# : 0.01	
d : 0.19	g : 0.13	e : 0.11	b : 0.07	[ : 0.07	i : 0.05	c : 0.05	= : 0.05	h : 0.05	f : 0.05	" : 0.03	# : 0.01	! : 0.01	a : 0.01	
d : 0.15	g : 0.13	[ : 0.11	c : 0.09	e : 0.09	i : 0.05	= : 0.05	a : 0.05	f : 0.05	h : 0.03	b : 0.03	! : 0.03	# : 0.03	
c : 0.19	[ : 0.15	g : 0.11	e : 0.09	d : 0.07	" : 0.07	f : 0.05	i : 0.03	= : 0.03	h : 0.03	b : 0.03	! : 0.03	# : 0.01	
c : 0.23	d : 0.09	g : 0.09	[ : 0.07	e : 0.07	" : 0.07	! : 0.05	a : 0.05	b : 0.05	= : 0.03	h : 0.03	f : 0.03	i : 0.01	# : 0.01	
c : 0.23	[ : 0.23	! : 0.11	" : 0.07	e : 0.05	d : 0.05	b : 0.03	g : 0.03	= : 0.03	i : 0.01	a : 0.01	h : 0.01	f : 0.01	# : 0.01	
b : 0.41	[ : 0.13	c : 0.13	! : 0.11	d : 0.05	a : 0.03	= : 0.03	e : 0.03	o : 0.01	
b : 0.43	a : 0.17	o : 0.11	c : 0.07	d : 0.05	= : 0.03	e : 0.03	! : 0.03	n : 0.01	
n : 0.58	o : 0.19	l : 0.05	= : 0.03	b : 0.03	a : 0.03	m : 0.03	
n : 0.58	o : 0.19	l : 0.11	m : 0.07	= : 0.01	
n : 0.58	o : 0.19	l : 0.13	m : 0.07	
n : 0.58	o : 0.19	l : 0.07	m : 0.07	a : 0.03	c : 0.01	
n : 0.56	o : 0.17	b : 0.09	] : 0.03	m : 0.03	c : 0.03	l : 0.01	= : 0.01	
b : 0.41	a : 0.19	c : 0.17	o : 0.07	d : 0.05	= : 0.03	e : 0.03	
b : 0.37	2 : 0.19	c : 0.15	] : 0.09	d : 0.05	= : 0.03	e : 0.03	a : 0.01	3 : 0.01	
2 : 0.25	] : 0.21	c : 0.19	3 : 0.07	d : 0.05	b : 0.05	g : 0.03	= : 0.03	e : 0.03	i : 0.01	
d : 0.15	c : 0.13	] : 0.11	a : 0.07	g : 0.07	e : 0.07	3 : 0.07	2 : 0.05	f : 0.05	i : 0.03	= : 0.03	h : 0.03	b : 0.03	
c : 0.17	d : 0.11	g : 0.11	e : 0.11	] : 0.09	i : 0.05	f : 0.05	3 : 0.05	b : 0.05	= : 0.03	h : 0.03	a : 0.03	2 : 0.01	
d : 0.17	g : 0.13	c : 0.11	e : 0.11	] : 0.09	i : 0.05	b : 0.05	h : 0.05	f : 0.05	2 : 0.05	= : 0.03	a : 0.01	
d : 0.25	g : 0.13	e : 0.11	] : 0.09	b : 0.07	i : 0.05	= : 0.05	h : 0.05	f : 0.05	c : 0.03	2 : 0.03	
d : 0.17	g : 0.13	e : 0.13	] : 0.11	i : 0.07	= : 0.05	h : 0.05	f : 0.05	c : 0.05	2 : 0.03	b : 0.03	a : 0.03	
g : 0.15	d : 0.15	c : 0.11	e : 0.11	] : 0.11	i : 0.07	h : 0.07	2 : 0.05	= : 0.05	f : 0.05	
c : 0.15	e : 0.13	g : 0.11	d : 0.11	a : 0.09	i : 0.07	h : 0.07	= : 0.05	] : 0.05	b : 0.03	2 : 0.01	: : 0.01	3 : 0.01	
] : 0.17	e : 0.15	c : 0.11	g : 0.09	i : 0.07	b : 0.07	h : 0.07	2 : 0.05	= : 0.03	3 : 0.03	d : 0.03	f : 0.03	
e : 0.21	] : 0.09	g : 0.07	2 : 0.07	3 : 0.07	b : 0.07	i : 0.05	h : 0.05	= : 0.05	d : 0.05	f : 0.05	c : 0.05	a : 0.01	
e : 0.23	c : 0.09	d : 0.09	3 : 0.07	g : 0.05	a : 0.05	h : 0.05	= : 0.05	f : 0.05	] : 0.05	b : 0.05	i : 0.03	2 : 0.01	6 : 0.01	
e : 0.25	d : 0.13	3 : 0.09	c : 0.09	] : 0.07	g : 0.05	= : 0.05	f : 0.05	h : 0.03	5 : 0.01	: : 0.01	a : 0.01	b : 0.01	6 : 0.01	i : 0.01	
e : 0.25	d : 0.13	c : 0.09	3 : 0.07	f : 0.07	g : 0.05	= : 0.05	] : 0.03	h : 0.03	: : 0.03	a : 0.03	5 : 0.01	H : 0.01	6 : 0.01	i : 0.01	

#score	611.7884072697234
#seq	51
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241SUC_GTF2F1_transcript_m3_run2.txt

#BEAR
"""bb####a[aqqqqqqqqa]a4444bb5	chr16:81526347-81526629(+)$1	282	30	60	16.5570
b[==========qqqqqqqq==========	chr17:1358925-1359184(-)$1	259	80	110	18.2695
!!eeeee[bb[aqqqqqqqqa]bbeeeeee	chr8:142418198-142418492(+)$1	294	67	97	15.9567
!ggggggg[cccqqqqqqqqccc]gggggg	chr19:2269882-2270164(+)$1	282	43	73	18.1564
c[==========qqqqqqqq==========	chr10:1094575-1094889(-)$1	314	226	256	18.4126
d[eeeee!!cccqqqqqqqqccc]eeeee4	chr20:36015324-36015597(+)$1	273	180	210	17.9028
f[bbccc[ddddqqqqqqqqdddd]ccc]b	chr20:30276714-30276934(-)$1	220	177	207	16.4623
eeee[ccc[cccqqqqqqqqcccccc]eee	chr16:22019809-22020119(+)$1	310	115	145	17.7852
ccc[ccc[a[bbqqqqqqqqbb]a]ccc]c	chr17:79974933-79975203(+)$1	270	64	94	17.5842
eeee[dddd[bbqqqqqqqqbb22dddd33	chr13:92000343-92000618(+)$1	275	59	89	16.0159
ddd[eeeee!!aqqqqqqqqa22eeeeedd	chr1:974585-974823(+)$1	238	9	39	15.7784
:dddd####cccqqqqqqqqccc333dddd	chr9:136802238-136802514(-)$1	276	49	79	17.3995
bb[ccc[ccc[aqqqqqqqqa]ccc22ccc	chr2:242510725-242511000(+)$1	275	226	256	17.1854
ee:cccffffffqqqqqqqqffffff4444	chr12:112035296-112035553(-)$1	257	123	153	14.8159
ffff!!a[ddddqqqqqqqqdddd]affff	chr20:60897801-60898097(-)$1	296	262	292	16.4065
bb[dddd!!cccqqqqqqqqccc22dddd]	chr5:180236958-180237249(-)$1	291	176	206	17.3854
gg####ffffffqqqqqqqqffffff4444	chr11:70462928-70463185(-)$1	257	167	197	16.0053
d$$$$$dddd[aqqqqqqqqa]dddd4444	chr4:187122724-187122996(+)$1	272	183	213	15.5943
:hhhhhhhhcccqqqqqqqqccc]hhhhhh	chr11:2160481-2160689(-)$1	208	61	91	14.5989
[a[ccc!!ddddqqqqqqqqdddd]ccc]a	chr9:139781021-139781291(+)$1	270	27	57	17.7371
[a!!a[ccc[bbqqqqqqqqbb]ccc]a22	chr6:160148327-160148573(+)$1	246	135	165	17.3476
""dddd!!ddddqqqqqqqqdddd]dddd]	chr9:14843089-14843402(-)$1	313	159	189	17.0736
fffff[ccc[bbqqqqqqqqbb]cccffff	chr2:238506500-238506786(-)$1	286	178	208	16.1849
e!!ffffff[bbqqqqqqqqbb]ffffff3	chr11:73307955-73308223(-)$1	268	185	215	16.2101
eee[ccceeeeeqqqqqqqqeeeee4444c	chr3:195635837-195636077(-)$1	240	107	137	16.1846
dddd####ddddqqqqqqqqdddd22dddd	chr2:242661336-242661598(+)$1	262	77	107	16.6174
d[eeeee!!cccqqqqqqqqccc22eeeee	chr2:91845257-91845547(-)$1	290	203	233	17.6506
!!ffffff!!bbqqqqqqqqbb]ffffff]	chr17:55726761-55727108(+)$1	347	243	273	16.5491
bb[bbccc[cccqqqqqqqqccc]ccc]bb	chr17:76821539-76821827(-)$1	288	218	248	16.6760
c"""hhhhhhhhqqqqqqqqhhhhhhhh]c	chr8:128749844-128750143(+)$1	299	184	214	14.7963
ccceeeee[cccqqqqqqqqccc]eeeee]	chr11:2719525-2719809(-)$1	284	111	141	17.5120
iiiiiiii[cccqqqqqqqqccciiiiiii	chr11:65192441-65192680(+)$1	239	126	156	18.4309
[ffffff[ddddqqqqqqqqddddffffff	chr8:30669981-30670272(-)$1	291	134	164	15.8588
[bb$$$$$ddddqqqqqqqqdddd22bb]c	chr7:100142268-100142569(+)$1	301	149	179	15.4673
b[ccc[bb[cccqqqqqqqqcccbb]ccc]	chr2:128568226-128568570(-)$1	344	145	175	17.4989
ee==========qqqqqqqq==========	chr21:45745414-45745668(+)$1	254	61	91	18.1073
cc[ccc####bbqqqqqqqqbb4444ccc]	chr19:7662888-7663172(+)$1	284	119	149	17.8084
hhhh"""bb[bbqqqqqqqqbb]bb]hhhh	chr12:69202411-69202651(+)$1	240	116	146	15.2969
a[ccc[ccc[bbqqqqqqqqbb]ccc]ccc	chr22:29196077-29196333(-)$1	256	16	46	17.5589
[a[a[ddddcccqqqqqqqqccc22dddd]	chr19:47105079-47105352(+)$1	273	93	123	17.4762
eeeee[bb[cccqqqqqqqqccc]bb]eee	chr16:89864827-89865121(-)$1	294	141	171	16.9815
hhhhh[bb"""aqqqqqqqqa333bb]hhh	chr17:76997898-76998144(-)$1	246	91	121	15.4772
:eeeee[bb[bbqqqqqqqqbb]bb]eeee	chr17:31255266-31255530(+)$1	264	58	88	15.2179
eeeee####cccqqqqqqqqccceeeee:e	chr1:143172809-143173121(-)$1	312	199	229	16.6923
[eeeee!!ddddqqqqqqqqdddd22eeee	chr19:878850-879112(-)$1	262	161	191	16.9523
ddd[bb[eeeeeqqqqqqqqeeeee]bb]d	chr17:7476465-7476710(+)$1	245	180	210	15.3129
[dddd!!eeeeeqqqqqqqqeeeee22ddd	chr9:116928641-116928895(+)$1	254	138	168	16.1119
##ddddffffffqqqqqqqqffffff]ddd	chr7:150777532-150777780(-)$1	248	164	194	15.5519
=======!!cccqqqqqqqqccc22=====	chr19:2128110-2128394(-)$1	284	248	278	18.9722
bbbb"""eeeeeqqqqqqqqeeeee]bb]b	chr12:57586070-57586345(+)$1	275	67	97	15.1255
dddd[ccc[cccqqqqqqqqcccccc]ddd	chr1:53686057-53686353(-)$1	296	153	183	17.6079
#cccdddd[cccqqqqqqqqccc22dddd]	chr21:47564994-47565231(-)$1	237	57	87	17.3419
[ccc[a[eeeeeqqqqqqqqeeeee]accc	chr7:2673911-2674147(+)$1	236	100	130	16.6775
cc!!bb[ccc[aqqqqqqqqa]ccc333bb	chr19:2269702-2269922(+)$1	220	24	54	16.8948
=======!!cccqqqqqqqqccc=======	chr17:53343286-53343558(+)$1	272	195	225	19.1017
:ffffff!!cccqqqqqqqqccc]ffffff	chrX:152956581-152956849(+)$1	268	139	169	16.1986
###iiiiiiiiiqqqqqqqqiiiiiiiii4	chr16:30935315-30935592(+)$1	277	20	50	17.7853
[ddddbb[ddddqqqqqqqqdddd22bb44	chr4:1220836-1221096(-)$1	260	125	155	16.0979
h[dddd[bb[bbqqqqqqqqbb]bb22ddd	chr11:2154667-2154872(-)$1	205	8	38	15.7631
adddd"""ddddqqqqqqqqdddd]dddd]	chr12:9230650-9230912(-)$1	262	148	178	17.0164

#otherMatches

#Seq PSSM
GAGGCAGGAUGUGGAAGAGGAGGGGAGGCG	chr16:81526347-81526629(+)$1	282	30	60	16.5570
CUGGUCCUCGAGAGCGGACCCUCGGGGGUC	chr17:1358925-1359184(-)$1	259	80	110	18.2695
guccacagagacagaaagcagacuuguggu	chr8:142418198-142418492(+)$1	294	67	97	15.9567
GUGCUCUCGGGGGAGUCGGGUUUGGGGGGC	chr19:2269882-2270164(+)$1	282	43	73	18.1564
CGUUGGUCUCCCGAACUGGAGGGAGGCCGG	chr10:1094575-1094889(-)$1	314	226	256	18.4126
CAGAGGAGAAUCGAUCCCUGGGUGUCCUCG	chr20:36015324-36015597(+)$1	273	180	210	17.9028
AACCCUAGUGUGGUUGAUUACACAGUAGUG	chr20:30276714-30276934(-)$1	220	177	207	16.4623
CCGGGCUGAGGGGAGAGGCGCCCCAGGCCG	chr16:22019809-22020119(+)$1	310	115	145	17.7852
GCUGGGUGGAAGGUGGGGUGCUGUGGCCGG	chr17:79974933-79975203(+)$1	270	64	94	17.5842
ccgcgggccggcggaggggggcagggccgg	chr13:92000343-92000618(+)$1	275	59	89	16.0159
CCAAGGUUUGGGGAGGAAGACAGGGAUCUG	chr1:974585-974823(+)$1	238	9	39	15.7784
CGUCUUCCAUGUUcacacccacacccagac	chr9:136802238-136802514(-)$1	276	49	79	17.3995
CAAUGUCCCAAGAUGUCGCACAUGGCUACA	chr2:242510725-242511000(+)$1	275	226	256	17.1854
GGGGUGGCGGGCGGUUGUCAGUUCGUAUUU	chr12:112035296-112035553(-)$1	257	123	153	14.8159
AGUCACGGACCCCUUCUGCAGGGUGCGACU	chr20:60897801-60898097(-)$1	296	262	292	16.4065
GGCUCCUAGCCGAGACGGGGCGGGCGGGAA	chr5:180236958-180237249(-)$1	291	176	206	17.3854
GCCCCUGGCUGCUGCACCCUGUGGCCCUUU	chr11:70462928-70463185(-)$1	257	167	197	16.0053
UACCUAGAGGACAGUUAAGAGCCCUCCAAC	chr4:187122724-187122996(+)$1	272	183	213	15.5943
CCGCAGUUCGCCUGCUCUCCGGCGGAGCUG	chr11:2160481-2160689(-)$1	208	61	91	14.5989
ggggucgggcgcggggucgggcgcaggcgc	chr9:139781021-139781291(+)$1	270	27	57	17.7371
GGACCGGCUGUggggcggggcagggcggag	chr6:160148327-160148573(+)$1	246	135	165	17.3476
gaggauggcugguuuauguuccagaguuca	chr9:14843089-14843402(-)$1	313	159	189	17.0736
aggugacucugggauuuuggccugagcgcc	chr2:238506500-238506786(-)$1	286	178	208	16.1849
UGGGCUGCUUUCAUUGAAAGGAUAGCGGCA	chr11:73307955-73308223(-)$1	268	185	215	16.2101
CAGGAGCGCGGGGAGGGGAGCCCGCGGAGG	chr3:195635837-195636077(-)$1	240	107	137	16.1846
GCCCUGUGCCAGGUGGACAGCUGGGUGGGU	chr2:242661336-242661598(+)$1	262	77	107	16.6174
AUUUGCGCAGGAACACCAAAUCCCUCGCAG	chr2:91845257-91845547(-)$1	290	203	233	17.6506
CUGGCCCUGGGAACUCAGUAUCAGGGGCCU	chr17:55726761-55727108(+)$1	347	243	273	16.5491
GGGAGGCCAGGUGUCAGGUGGCCAGGCAUU	chr17:76821539-76821827(-)$1	288	218	248	16.6760
ggaggggccccggcgcggagcggggUUCAC	chr8:128749844-128750143(+)$1	299	184	214	14.7963
AGAUGAGAGUUGAUCAGAUGCAGGUCUCAG	chr11:2719525-2719809(-)$1	284	111	141	17.5120
AUACUAAUUAAUAAUAGUAAGUUGUUAGUG	chr11:65192441-65192680(+)$1	239	126	156	18.4309
GCGCUCGGAGCCGCCUGCUGGGCUUgggcg	chr8:30669981-30670272(-)$1	291	134	164	15.8588
GAGGUUGAGCCUAAAGGGAAGGGCGGCUGG	chr7:100142268-100142569(+)$1	301	149	179	15.4673
GGUUCGAGACUUAUGGGAGGGGGCUGGAGG	chr2:128568226-128568570(-)$1	344	145	175	17.4989
UGCAGGAAGCCCGCGUCCUGGGGUUUUCUG	chr21:45745414-45745668(+)$1	254	61	91	18.1073
GGGCAGGAAACCAGAUCAUAGGGAAGCUGG	chr19:7662888-7663172(+)$1	284	119	149	17.8084
UCCGCGGGAGUUCAGGGUAAAGGUCACGGG	chr12:69202411-69202651(+)$1	240	116	146	15.2969
CACCUGAGCCCCGAGGAGAAGGCGCUGAGG	chr22:29196077-29196333(-)$1	256	16	46	17.5589
GGAUGGGGUGGUGGAGGGUAGCUGGGCCCG	chr19:47105079-47105352(+)$1	273	93	123	17.4762
GGUUUGCUUCCCUCUAGUGUGGGCAGGGGA	chr16:89864827-89865121(-)$1	294	141	171	16.9815
GGGAGGGAGGAGGGUUAGGACGAAUUGCUU	chr17:76997898-76998144(-)$1	246	91	121	15.4772
GGCCCGGCUGCCGGGGAGAGGGGAGGCGGG	chr17:31255266-31255530(+)$1	264	58	88	15.2179
GCAGUAUUAAGGGGGAGUAGCCUGCUGCAG	chr1:143172809-143173121(-)$1	312	199	229	16.6923
gcggccggggccggggccggggccggggcc	chr19:878850-879112(-)$1	262	161	191	16.9523
UUCGUCGCGGCUAAAACACGGGUCGGGGAG	chr17:7476465-7476710(+)$1	245	180	210	15.3129
AGGGCCAAAUGCCAAGUGUUGCAUUCAGCC	chr9:116928641-116928895(+)$1	254	138	168	16.1119
CCACGCGCGcccugcgaggugggcgcugcg	chr7:150777532-150777780(-)$1	248	164	194	15.5519
CCUCCCCGGCCCCCACUGCAGGGAAGGGGA	chr19:2128110-2128394(-)$1	284	248	278	18.9722
GCCCCUCAGGGCUCAUCCAUGCCCUCGGUG	chr12:57586070-57586345(+)$1	275	67	97	15.1255
GGCGAGGGUCUGGGAGGCAACAGCUCGCGC	chr1:53686057-53686353(-)$1	296	153	183	17.6079
ACCAGCACCGCCCUCACCCCGGCAAGUGCU	chr21:47564994-47565231(-)$1	237	57	87	17.3419
UGGGUGGGCCUGGGCUGUGGCAGGCGCCCC	chr7:2673911-2674147(+)$1	236	100	130	16.6775
GGCAGCAGCAGUGAGAGGUAAGUGCCCCGC	chr19:2269702-2269922(+)$1	220	24	54	16.8948
UUUUCUUCUGGUGAAGGGUAGCUGAGAAAG	chr17:53343286-53343558(+)$1	272	195	225	19.1017
AGGGAAGAAUCUACAUGGCAAGGACUUCCC	chrX:152956581-152956849(+)$1	268	139	169	16.1986
GCACUGGACCCCUGGGCAGUGGGGUCCGGG	chr16:30935315-30935592(+)$1	277	20	50	17.7853
CUGCACCCGUGCACCUACACGCACAUGGAA	chr4:1220836-1221096(-)$1	260	125	155	16.0979
CCGUGGCAUCGUUGAGGAGUGCUGUUUCCG	chr11:2154667-2154872(-)$1	205	8	38	15.7631
ggucaauaggugcaagaaaccaccauggca	chr12:9230650-9230912(-)$1	262	148	178	17.0164

#DB
...((....(.(........).)....)).	chr16:81526347-81526629(+)$1	1	30	60	16.5570
(.((((((((((........))))))))))	chr17:1358925-1359184(-)$1	1	80	110	18.2695
..(((((.((.(........).))))))))	chr8:142418198-142418492(+)$1	1	67	97	15.9567
.(((((((.(((........))).))))))	chr19:2269882-2270164(+)$1	1	43	73	18.1564
(.((((((((((........))))))))))	chr10:1094575-1094889(-)$1	1	226	256	18.4126
(.(((((..(((........))).))))).	chr20:36015324-36015597(+)$1	1	180	210	17.9028
(.(((((.((((........)))).))).)	chr20:30276714-30276934(-)$1	1	177	207	16.4623
((((.(((.(((........)))))).)))	chr16:22019809-22020119(+)$1	1	115	145	17.7852
(((.(((.(.((........)).).))).)	chr17:79974933-79975203(+)$1	1	64	94	17.5842
((((.((((.((........))..))))..	chr13:92000343-92000618(+)$1	1	59	89	16.0159
(((.(((((..(........)..)))))))	chr1:974585-974823(+)$1	1	9	39	15.7784
.((((....(((........)))...))))	chr9:136802238-136802514(-)$1	1	49	79	17.3995
((.(((.(((.(........).)))..)))	chr2:242510725-242511000(+)$1	1	226	256	17.1854
)).(((((((((........))))))....	chr12:112035296-112035553(-)$1	1	123	153	14.8159
((((..(.((((........)))).)))))	chr20:60897801-60898097(-)$1	1	262	292	16.4065
((.((((..(((........)))..)))).	chr5:180236958-180237249(-)$1	1	176	206	17.3854
((....((((((........))))))....	chr11:70462928-70463185(-)$1	1	167	197	16.0053
(.....((((.(........).))))....	chr4:187122724-187122996(+)$1	1	183	213	15.5943
.(((((((((((........))).))))))	chr11:2160481-2160689(-)$1	1	61	91	14.5989
.(.(((..((((........)))).))).)	chr9:139781021-139781291(+)$1	1	27	57	17.7371
.(..(.(((.((........)).))).)..	chr6:160148327-160148573(+)$1	1	135	165	17.3476
..((((..((((........)))).)))).	chr9:14843089-14843402(-)$1	1	159	189	17.0736
(((((.(((.((........)).)))))))	chr2:238506500-238506786(-)$1	1	178	208	16.1849
(..((((((.((........)).)))))).	chr11:73307955-73308223(-)$1	1	185	215	16.2101
(((.((((((((........)))))....)	chr3:195635837-195636077(-)$1	1	107	137	16.1846
((((....((((........))))..))))	chr2:242661336-242661598(+)$1	1	77	107	16.6174
(.(((((..(((........)))..)))))	chr2:91845257-91845547(-)$1	1	203	233	17.6506
..((((((..((........)).)))))).	chr17:55726761-55727108(+)$1	1	243	273	16.5491
((.(((((.(((........))).))).))	chr17:76821539-76821827(-)$1	1	218	248	16.6760
(...((((((((........)))))))).)	chr8:128749844-128750143(+)$1	1	184	214	14.7963
((((((((.(((........))).))))).	chr11:2719525-2719809(-)$1	1	111	141	17.5120
((((((((.(((........))))))))))	chr11:65192441-65192680(+)$1	1	126	156	18.4309
.((((((.((((........))))))))))	chr8:30669981-30670272(-)$1	1	134	164	15.8588
.((.....((((........))))..)).)	chr7:100142268-100142569(+)$1	1	149	179	15.4673
(.(((.((.(((........))))).))).	chr2:128568226-128568570(-)$1	1	145	175	17.4989
((((((((((((........))))))))))	chr21:45745414-45745668(+)$1	1	61	91	18.1073
((.(((....((........))....))).	chr19:7662888-7663172(+)$1	1	119	149	17.8084
((((...((.((........)).)).))))	chr12:69202411-69202651(+)$1	1	116	146	15.2969
(.(((.(((.((........)).))).)))	chr22:29196077-29196333(-)$1	1	16	46	17.5589
.(.(.(((((((........)))..)))).	chr19:47105079-47105352(+)$1	1	93	123	17.4762
(((((.((.(((........))).)).)))	chr16:89864827-89865121(-)$1	1	141	171	16.9815
(((((.((...(........)...)).)))	chr17:76997898-76998144(-)$1	1	91	121	15.4772
.(((((.((.((........)).)).))))	chr17:31255266-31255530(+)$1	1	58	88	15.2179
(((((....(((........)))))))).(	chr1:143172809-143173121(-)$1	1	199	229	16.6923
.(((((..((((........))))..))))	chr19:878850-879112(-)$1	1	161	191	16.9523
(((.((.(((((........))))).)).)	chr17:7476465-7476710(+)$1	1	180	210	15.3129
.((((..(((((........)))))..)))	chr9:116928641-116928895(+)$1	1	138	168	16.1119
..((((((((((........)))))).)))	chr7:150777532-150777780(-)$1	1	164	194	15.5519
(((((((..(((........)))..)))))	chr19:2128110-2128394(-)$1	1	248	278	18.9722
((((...(((((........))))).)).)	chr12:57586070-57586345(+)$1	1	67	97	15.1255
((((.(((.(((........)))))).)))	chr1:53686057-53686353(-)$1	1	153	183	17.6079
.(((((((.(((........)))..)))).	chr21:47564994-47565231(-)$1	1	57	87	17.3419
.(((.(.(((((........))))).))))	chr7:2673911-2674147(+)$1	1	100	130	16.6775
((..((.(((.(........).)))...))	chr19:2269702-2269922(+)$1	1	24	54	16.8948
(((((((..(((........))))))))))	chr17:53343286-53343558(+)$1	1	195	225	19.1017
.((((((..(((........))).))))))	chrX:152956581-152956849(+)$1	1	139	169	16.1986
...(((((((((........))))))))).	chr16:30935315-30935592(+)$1	1	20	50	17.7853
.((((((.((((........))))..))..	chr4:1220836-1221096(-)$1	1	125	155	16.0979
(.((((.((.((........)).))..)))	chr11:2154667-2154872(-)$1	1	8	38	15.7631
(((((...((((........)))).)))).	chr12:9230650-9230912(-)$1	1	148	178	17.0164

#PSSM
[ : 0.15	e : 0.13	d : 0.11	b : 0.09	c : 0.09	: : 0.06	! : 0.05	f : 0.05	h : 0.05	# : 0.05	" : 0.03	a : 0.03	= : 0.03	g : 0.01	i : 0.01	
e : 0.15	[ : 0.13	d : 0.13	c : 0.09	b : 0.08	f : 0.06	" : 0.05	! : 0.05	h : 0.05	a : 0.05	g : 0.03	# : 0.03	= : 0.03	$ : 0.01	i : 0.01	
d : 0.18	e : 0.16	c : 0.09	[ : 0.09	= : 0.08	f : 0.08	b : 0.05	h : 0.05	! : 0.05	" : 0.03	# : 0.03	g : 0.01	: : 0.01	$ : 0.01	i : 0.01	
e : 0.16	d : 0.16	c : 0.13	f : 0.09	= : 0.08	b : 0.06	[ : 0.06	h : 0.05	$ : 0.03	! : 0.03	i : 0.03	g : 0.01	# : 0.01	" : 0.01	a : 0.01	
e : 0.15	c : 0.15	d : 0.15	= : 0.08	[ : 0.08	f : 0.08	b : 0.06	h : 0.05	# : 0.03	$ : 0.03	i : 0.03	" : 0.03	g : 0.01	! : 0.01	a : 0.01	
c : 0.16	e : 0.11	d : 0.11	[ : 0.09	# : 0.08	= : 0.08	f : 0.06	" : 0.05	b : 0.05	! : 0.03	$ : 0.03	h : 0.03	i : 0.03	g : 0.01	a : 0.01	
c : 0.15	f : 0.11	[ : 0.09	# : 0.08	= : 0.08	e : 0.08	d : 0.08	! : 0.06	b : 0.06	" : 0.05	h : 0.03	i : 0.03	g : 0.01	a : 0.01	$ : 0.01	
! : 0.15	c : 0.13	e : 0.11	[ : 0.09	b : 0.09	# : 0.08	f : 0.08	d : 0.06	= : 0.05	h : 0.03	i : 0.03	g : 0.01	$ : 0.01	" : 0.01	
d : 0.21	[ : 0.15	! : 0.11	e : 0.09	c : 0.08	# : 0.06	b : 0.06	f : 0.06	= : 0.05	h : 0.03	a : 0.01	" : 0.01	i : 0.01	
c : 0.35	d : 0.18	[ : 0.15	e : 0.08	= : 0.05	f : 0.05	! : 0.03	a : 0.01	b : 0.01	h : 0.01	# : 0.01	" : 0.01	i : 0.01	
c : 0.31	b : 0.18	d : 0.16	[ : 0.08	e : 0.08	= : 0.05	f : 0.05	! : 0.01	h : 0.01	" : 0.01	i : 0.01	
c : 0.31	b : 0.18	d : 0.16	a : 0.11	e : 0.08	= : 0.05	f : 0.05	h : 0.01	i : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.31	b : 0.18	d : 0.16	a : 0.11	e : 0.08	= : 0.05	f : 0.05	h : 0.01	i : 0.01	
c : 0.31	b : 0.18	d : 0.16	] : 0.08	e : 0.08	= : 0.05	f : 0.05	2 : 0.01	h : 0.01	3 : 0.01	i : 0.01	
c : 0.35	d : 0.18	] : 0.15	e : 0.08	= : 0.05	f : 0.05	2 : 0.03	a : 0.01	b : 0.01	h : 0.01	4 : 0.01	3 : 0.01	i : 0.01	
d : 0.18	] : 0.11	c : 0.11	e : 0.11	2 : 0.09	b : 0.08	f : 0.08	= : 0.06	4 : 0.03	3 : 0.03	i : 0.03	a : 0.01	h : 0.01	
e : 0.16	2 : 0.15	c : 0.13	f : 0.11	] : 0.09	b : 0.09	= : 0.06	4 : 0.03	d : 0.03	h : 0.03	i : 0.03	g : 0.01	3 : 0.01	
c : 0.15	d : 0.11	2 : 0.11	f : 0.11	e : 0.09	] : 0.09	= : 0.08	4 : 0.05	3 : 0.03	h : 0.03	i : 0.03	b : 0.03	g : 0.01	a : 0.01	
e : 0.13	d : 0.13	] : 0.11	c : 0.09	f : 0.09	4 : 0.08	= : 0.08	b : 0.06	2 : 0.05	h : 0.05	i : 0.03	g : 0.01	a : 0.01	3 : 0.01	
d : 0.19	e : 0.16	c : 0.13	f : 0.09	b : 0.08	= : 0.08	4 : 0.06	h : 0.06	i : 0.03	g : 0.01	a : 0.01	] : 0.01	3 : 0.01	
d : 0.19	e : 0.13	] : 0.11	f : 0.09	= : 0.08	c : 0.08	4 : 0.08	b : 0.05	h : 0.05	i : 0.03	g : 0.01	3 : 0.01	2 : 0.01	: : 0.01	
] : 0.15	d : 0.13	e : 0.11	c : 0.11	4 : 0.09	= : 0.08	b : 0.06	f : 0.06	h : 0.05	3 : 0.03	5 : 0.01	g : 0.01	a : 0.01	2 : 0.01	i : 0.01	

#score	1005.1988352989678
#seq	60
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_CDS_m1_run1.txt

#BEAR
ggggggg[bbwwwwwwwwwwwwwwbb]ggg	chr8:94748104-94748359(-)$1	255	28	58	22.7836
eeee!!ddddvvvvvvvvvvvvvdddd333	chr2:47388758-47389000(-)$1	242	159	189	19.7013
:eeeee!!eeeeettttttttttteeeee6	chr12:76448699-76448970(-)$1	271	116	146	15.7280
a[ffffff^^^^^^^^^^^^^^^^^^^^^^	chr1:8934783-8935001(-)$1	218	158	188	20.6446
ebb!!eeeeettttttttttteeeee]bb]	chrX:70793452-70793759(+)$1	307	152	182	15.7288
=====[a[bb^^^^^^^^^^^^^^^^^^^^	chr12:76449740-76449948(-)$1	208	29	59	21.1550
=====[a[bb^^^^^^^^^^^^^^^^^^^^	chr12:76449748-76449964(-)$1	216	45	75	21.1550
bffffff[bbvvvvvvvvvvvvvbb22fff	chr8:144940521-144940787(-)$1	266	181	211	19.6615
=====[a[ccctttttttttttccca]===	chr16:72821493-72821755(-)$1	262	14	44	19.2980
fff[ffffffyyyyyyyyyyyyyyyyffff	chr1:45244215-45244460(+)$1	245	168	198	21.5178
:gggggggwwwwwwwwwwwwwwggggggg:	chr4:104081681-104081928(-)$1	247	0	30	18.0235
ggga^^^^^^^^^^^^^^^^^^^^^a]ggg	chr12:104341332-104341586(+)$1	254	202	232	20.5747
[ffffffzzzzzzzzzzzzzzzzzffffff	chr10:129913693-129914010(-)$1	317	81	111	16.4445
3dddd:ffffffuuuuuuuuuuuuffffff	chr11:5290778-5291008(-)$1	230	120	150	17.6687
ffff!!ffffffuuuuuuuuuuuuffffff	chr17:38555238-38555461(-)$1	223	152	182	19.6305
[ccc[eeeeexxxxxxxxxxxxxxxeeeee	chr20:30369971-30370208(+)$1	237	130	160	20.0487
cc[eeeee^^^^^^^^^^^^^^^^^^eeee	chr10:70546202-70546434(+)$1	232	49	79	20.5817
!!dddd[eeeeeuuuuuuuuuuuueeeeed	chrX:71495293-71495509(-)$1	216	107	137	19.4045
iiiiiiiiizzzzzzzzzzzzzzzzziiii	chr18:9255445-9255700(+)$1	255	100	130	17.9321
dddd[ccc[bbvvvvvvvvvvvvvbb]ccc	chr2:152320763-152321017(+)$1	254	213	243	19.6255
hhhhhhhh^^^^^^^^^^^^^^^^^^^hhh	chr12:104333267-104333486(+)$1	219	97	127	19.2034
!iiiiiiiiivvvvvvvvvvvvviiiiiii	chr11:67810673-67810988(+)$1	315	232	262	20.1372
ff[bb[ddddwwwwwwwwwwwwwwdddd22	chr3:14239433-14239695(+)$1	262	7	37	20.5239
hhhhhhhh^^^^^^^^^^^^^^^^^^^hhh	chr12:104333186-104333467(+)$1	281	178	208	19.2034
=[eeeeebbxxxxxxxxxxxxxxxbb]eee	chr17:38556415-38556673(-)$1	258	79	109	19.7924
=======!!cccssssssssssccc22===	chr14:56083134-56083445(+)$1	311	80	110	14.9885
:ffffff"""cccssssssssssccc]fff	chr1:214817915-214818139(+)$1	224	190	220	13.3222
!ccc####dddduuuuuuuuuuuudddd33	chr4:436009-436317(-)$1	308	21	51	19.9328
hhhhh[ddddxxxxxxxxxxxxxxxdddd]	chr19:8532318-8532535(+)$1	217	40	70	19.0681
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:102549270-102549477(-)$1	207	2	32	20.1561

#otherMatches

#Seq PSSM
UUGACAGCCUGUCUAAUUUUAUUGAGUCUG	chr8:94748104-94748359(-)$1	255	28	58	22.7836
CCUCAUUCUUCACUUUGAUUUUUAAGAUAA	chr2:47388758-47389000(-)$1	242	159	189	19.7013
UUCUGAAGCACUUGAAAGAUAUUAAAGUGA	chr12:76448699-76448970(-)$1	271	116	146	15.7280
GUGCUUCAUUUUAAAAAUUUUCUACAAAUG	chr1:8934783-8935001(-)$1	218	158	188	20.6446
CCACAUGAUUAAGCCUGUUGAAGUCACUGA	chrX:70793452-70793759(+)$1	307	152	182	15.7288
AGAUUGAAGAUGAGAAAAAAGAUGAAGAAA	chr12:76449740-76449948(-)$1	208	29	59	21.1550
AGAUUGAAGAUGAGAAAAAAGAUGAAGAAA	chr12:76449748-76449964(-)$1	216	45	75	21.1550
CAUCGACCCCGUGCGCAACCUGAGGCUGUC	chr8:144940521-144940787(-)$1	266	181	211	19.6615
GGCAGCGAGGAGCCACCUGAAGUCCCUCUG	chr16:72821493-72821755(-)$1	262	14	44	19.2980
AUAAAGGUGUUUAUUGUUUUGUUCCCACAU	chr1:45244215-45244460(+)$1	245	168	198	21.5178
UGUAAUUUGGAAUUGGAAGGAAAGAUUACU	chr4:104081681-104081928(-)$1	247	0	30	18.0235
CCCCUUCUCCCCUGCACUGUAAAAUGUGGG	chr12:104341332-104341586(+)$1	254	202	232	20.5747
UGGAUGUAAAAUCACAAAAAGAAAAUGUCC	chr10:129913693-129914010(-)$1	317	81	111	16.4445
CUGGACCCAGAGAUUUUUUGACAGCUUUGG	chr11:5290778-5291008(-)$1	230	120	150	17.6687
AAAGAAGCCCAGCAAAAGGUAAUCUUGGGU	chr17:38555238-38555461(-)$1	223	152	182	19.6305
ACUCCUGUACUGCAAACCAAACACCGUGCA	chr20:30369971-30370208(+)$1	237	130	160	20.0487
UAAAAAAUUUGAAAUUUGAAUACUAUGUUU	chr10:70546202-70546434(+)$1	232	49	79	20.5817
GAUUCAUGGGUAAGAAGUUUUAAAUACUCU	chrX:71495293-71495509(-)$1	216	107	137	19.4045
UCUUUUAGGGAGGAAAAAAUAAAAGAUCUA	chr18:9255445-9255700(+)$1	255	100	130	17.9321
AUGUGUGUGAGGAAAAAAAUGAAACUAGCA	chr2:152320763-152321017(+)$1	254	213	243	19.6255
GAAGAUGAAUACAAAGCUUUCUACAAAUCA	chr12:104333267-104333486(+)$1	219	97	127	19.2034
GCGGCUUCCUCAUUGCCAGCUUCAGGGAGC	chr11:67810673-67810988(+)$1	315	232	262	20.1372
UGUCAUGAUGAAUCCAUUUUUUAACAUUUC	chr3:14239433-14239695(+)$1	262	7	37	20.5239
GAAGAUGAAUACAAAGCUUUCUACAAAUCA	chr12:104333186-104333467(+)$1	281	178	208	19.2034
ACUAUAGGGAAUACCAUACAGAUACCACUG	chr17:38556415-38556673(-)$1	258	79	109	19.7924
UUUGUUUGUGUUUAAUAAAGAUGACCAGGA	chr14:56083134-56083445(+)$1	311	80	110	14.9885
UGAGCCUCCAGGGGAAGAUAAAACCCAGGG	chr1:214817915-214818139(+)$1	224	190	220	13.3222
ACAGACCUGAAUCAACACACGAAAAUUCUU	chr4:436009-436317(-)$1	308	21	51	19.9328
UUGUAUUUCUCUUGUGCACAUUUUUAGAAU	chr19:8532318-8532535(+)$1	217	40	70	19.0681
cuuccagaggaugaagaagagaaaaagaag	chr14:102549270-102549477(-)$1	207	2	32	20.1561

#DB
(((((((.((..............)).)))	chr8:94748104-94748359(-)$1	1	28	58	22.7836
((((..((((.............))))...	chr2:47388758-47389000(-)$1	1	159	189	19.7013
.(((((..(((((...........))))).	chr12:76448699-76448970(-)$1	1	116	146	15.7280
(.((((((......................	chr1:8934783-8935001(-)$1	1	158	188	20.6446
(((..(((((...........))))).)).	chrX:70793452-70793759(+)$1	1	152	182	15.7288
(((((.(.((....................	chr12:76449740-76449948(-)$1	1	29	59	21.1550
(((((.(.((....................	chr12:76449748-76449964(-)$1	1	45	75	21.1550
(((((((.((.............))..)))	chr8:144940521-144940787(-)$1	1	181	211	19.6615
(((((.(.(((...........)))).)))	chr16:72821493-72821755(-)$1	1	14	44	19.2980
(((.((((((................))))	chr1:45244215-45244460(+)$1	1	168	198	21.5178
.(((((((..............))))))).	chr4:104081681-104081928(-)$1	1	0	30	18.0235
((((.....................).)))	chr12:104341332-104341586(+)$1	1	202	232	20.5747
.((((((.................))))))	chr10:129913693-129914010(-)$1	1	81	111	16.4445
.)))).((((((............))))))	chr11:5290778-5291008(-)$1	1	120	150	17.6687
((((..((((((............))))))	chr17:38555238-38555461(-)$1	1	152	182	19.6305
.(((.(((((...............)))))	chr20:30369971-30370208(+)$1	1	130	160	20.0487
((.(((((..................))))	chr10:70546202-70546434(+)$1	1	49	79	20.5817
..((((.(((((............))))))	chrX:71495293-71495509(-)$1	1	107	137	19.4045
(((((((((.................))))	chr18:9255445-9255700(+)$1	1	100	130	17.9321
((((.(((.((.............)).)))	chr2:152320763-152321017(+)$1	1	213	243	19.6255
((((((((...................)))	chr12:104333267-104333486(+)$1	1	97	127	19.2034
.(((((((((.............)))))))	chr11:67810673-67810988(+)$1	1	232	262	20.1372
((.((.((((..............))))..	chr3:14239433-14239695(+)$1	1	7	37	20.5239
((((((((...................)))	chr12:104333186-104333467(+)$1	1	178	208	19.2034
(.(((((((...............)).)))	chr17:38556415-38556673(-)$1	1	79	109	19.7924
(((((((..(((..........)))..)))	chr14:56083134-56083445(+)$1	1	80	110	14.9885
.((((((...(((..........))).)))	chr1:214817915-214818139(+)$1	1	190	220	13.3222
.(((....((((............))))..	chr4:436009-436317(-)$1	1	21	51	19.9328
(((((.((((...............)))).	chr19:8532318-8532535(+)$1	1	40	70	19.0681
(((((.........................	chr14:102549270-102549477(-)$1	1	2	32	20.1561

#PSSM
= : 0.16	e : 0.10	: : 0.10	f : 0.10	! : 0.10	h : 0.10	g : 0.06	[ : 0.06	a : 0.03	b : 0.03	3 : 0.03	c : 0.03	i : 0.03	d : 0.03	
f : 0.19	= : 0.13	g : 0.10	e : 0.10	c : 0.10	h : 0.10	[ : 0.06	d : 0.06	i : 0.06	b : 0.03	! : 0.03	
f : 0.19	e : 0.13	= : 0.13	g : 0.10	d : 0.10	h : 0.10	c : 0.06	[ : 0.06	i : 0.06	b : 0.03	
e : 0.16	f : 0.16	= : 0.13	d : 0.10	h : 0.10	g : 0.06	c : 0.06	i : 0.06	! : 0.03	[ : 0.03	a : 0.03	b : 0.03	
f : 0.16	e : 0.13	= : 0.13	! : 0.10	h : 0.10	g : 0.06	d : 0.06	[ : 0.06	i : 0.06	^ : 0.03	b : 0.03	# : 0.03	
e : 0.16	f : 0.16	[ : 0.16	g : 0.06	! : 0.06	^ : 0.06	i : 0.06	h : 0.06	: : 0.03	d : 0.03	c : 0.03	= : 0.03	# : 0.03	
f : 0.23	e : 0.13	d : 0.10	a : 0.10	g : 0.06	^ : 0.06	i : 0.06	h : 0.06	! : 0.03	[ : 0.03	c : 0.03	= : 0.03	# : 0.03	
[ : 0.16	f : 0.13	e : 0.13	d : 0.10	! : 0.06	^ : 0.06	i : 0.06	h : 0.06	g : 0.03	z : 0.03	c : 0.03	b : 0.03	" : 0.03	# : 0.03	
^ : 0.19	b : 0.16	d : 0.13	e : 0.13	f : 0.10	i : 0.06	c : 0.03	w : 0.03	z : 0.03	[ : 0.03	! : 0.03	" : 0.03	
^ : 0.19	b : 0.16	d : 0.13	e : 0.13	f : 0.10	c : 0.06	z : 0.06	w : 0.03	i : 0.03	x : 0.03	" : 0.03	
^ : 0.26	w : 0.10	v : 0.10	c : 0.10	x : 0.10	e : 0.06	z : 0.06	f : 0.06	t : 0.03	y : 0.03	b : 0.03	d : 0.03	
^ : 0.26	v : 0.13	w : 0.10	x : 0.10	e : 0.06	t : 0.06	z : 0.06	f : 0.06	c : 0.06	y : 0.03	d : 0.03	
^ : 0.26	v : 0.13	u : 0.13	w : 0.10	x : 0.10	t : 0.06	z : 0.06	e : 0.03	y : 0.03	s : 0.03	c : 0.03	
^ : 0.26	v : 0.13	u : 0.13	w : 0.10	t : 0.10	x : 0.10	z : 0.06	s : 0.06	y : 0.03	
^ : 0.26	v : 0.13	u : 0.13	w : 0.10	t : 0.10	x : 0.10	z : 0.06	s : 0.06	y : 0.03	
^ : 0.26	v : 0.13	u : 0.13	w : 0.10	t : 0.10	x : 0.10	z : 0.06	s : 0.06	y : 0.03	
^ : 0.26	v : 0.13	u : 0.13	w : 0.10	t : 0.10	x : 0.10	z : 0.06	s : 0.06	y : 0.03	
^ : 0.26	v : 0.13	u : 0.13	w : 0.10	t : 0.10	x : 0.10	z : 0.06	s : 0.06	y : 0.03	
^ : 0.26	v : 0.13	u : 0.13	w : 0.10	t : 0.10	x : 0.10	z : 0.06	s : 0.06	y : 0.03	
^ : 0.26	v : 0.13	u : 0.13	w : 0.10	t : 0.10	x : 0.10	z : 0.06	s : 0.06	y : 0.03	
^ : 0.26	v : 0.13	u : 0.13	w : 0.10	t : 0.10	x : 0.10	z : 0.06	s : 0.06	y : 0.03	
^ : 0.26	v : 0.13	u : 0.13	w : 0.10	x : 0.10	t : 0.06	z : 0.06	s : 0.06	e : 0.03	y : 0.03	
^ : 0.26	v : 0.13	u : 0.13	x : 0.10	w : 0.06	c : 0.06	z : 0.06	t : 0.03	e : 0.03	y : 0.03	g : 0.03	s : 0.03	
^ : 0.26	u : 0.13	c : 0.10	x : 0.10	w : 0.06	z : 0.06	d : 0.03	t : 0.03	e : 0.03	b : 0.03	y : 0.03	g : 0.03	v : 0.03	i : 0.03	
^ : 0.26	b : 0.13	d : 0.10	e : 0.10	c : 0.10	f : 0.10	x : 0.06	y : 0.03	g : 0.03	z : 0.03	i : 0.03	
^ : 0.23	d : 0.13	e : 0.13	b : 0.10	f : 0.10	2 : 0.06	a : 0.06	y : 0.03	g : 0.03	z : 0.03	i : 0.03	c : 0.03	
] : 0.23	^ : 0.19	d : 0.13	e : 0.13	f : 0.13	2 : 0.06	i : 0.06	g : 0.03	
f : 0.19	e : 0.16	^ : 0.13	g : 0.10	d : 0.10	= : 0.06	i : 0.06	h : 0.06	3 : 0.03	b : 0.03	c : 0.03	
f : 0.19	e : 0.16	^ : 0.13	g : 0.10	3 : 0.06	= : 0.06	i : 0.06	h : 0.06	b : 0.03	c : 0.03	2 : 0.03	d : 0.03	
f : 0.19	^ : 0.13	e : 0.10	g : 0.06	3 : 0.06	] : 0.06	= : 0.06	i : 0.06	h : 0.06	6 : 0.03	: : 0.03	d : 0.03	c : 0.03	2 : 0.03	

#score	573.6372862367638
#seq	30
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_UTR_m1_run1.txt

#BEAR
[a[ccc"""ddddnnnnndddd333ccc]a	chr9:139904666-139904966(-)$1	300	2	32	13.9418
ccc[==========mmmm==========]c	chr9:140347334-140347564(-)$1	230	143	173	13.1570
[ggggggg!!ddddlllddddggggggg]c	chr11:67810675-67810936(+)$1	261	117	147	14.3453
gggggggggggggglllgggggggiiiiii	chr11:70265862-70266136(+)$1	274	48	78	11.6102
eeee[agggggggooooooggggggg]a]e	chr17:77078044-77078299(+)$1	255	103	133	11.1848
======="""ddddmmmmdddd]=======	chr2:128180682-128180991(+)$1	309	122	152	14.8700
ceeeee####ddddnnnnnddddeeeee]c	chr1:44442124-44442392(+)$1	268	174	204	12.5632
ccc[==========mmmm==========]c	chr9:140347388-140347614(-)$1	226	193	223	13.1570
iiiiiiii[ddddmmmmdddd22iiiiiii	chr17:60556496-60556861(+)$1	365	168	198	12.4480
bb============nnnnn===========	chr4:144106170-144106394(+)$1	224	108	138	12.5955
ggggggg[bbddddllldddd22bb]gggg	chr13:50571174-50571467(+)$1	293	110	140	12.2875
ffffff####ddddllldddd4444fffff	chr5:179050391-179050697(-)$1	306	130	160	13.2960
####==========mmmm==========bb	chr9:140347364-140347588(-)$1	224	167	197	11.6883
ffffffccc[ddddnnnnndddd22ccc]f	chr17:79865281-79865532(-)$1	251	47	77	11.4455
iiiiiiii[eeeeeooooooeeeee]iiii	chr11:721152-721409(+)$1	257	94	124	11.2805
[bbeeeee"""cccooooooccc333eeee	chr12:7023720-7023969(+)$1	249	183	213	11.0551
dddd[ccc[ddddnnnnndddd333ccc]d	chr9:135930323-135930613(+)$1	290	226	256	12.1332
eeee!!a####cccooooooccc333a22e	chr7:150774541-150774786(-)$1	245	143	173	12.5474
c!!dddd"""ddddllldddd333dddd66	chr16:88718714-88718961(-)$1	247	142	172	12.3376
eee[ccc"""ddddllldddd22ccceeee	chr17:74732712-74732968(-)$1	256	159	189	13.4943
gg[bb!!ggggggglllggggggg]bbggg	chr20:57226350-57226602(+)$1	252	55	85	10.4865
cc[ccc[bb[ddddllldddd]bb]ccc]c	chr6:74230519-74230781(-)$1	262	145	175	12.7106
eee[abb[a[ddddmmmmdddd]a]bb22a	chr7:150777605-150777858(-)$1	253	113	143	11.6432
[eeeee####cccooooooccceeeee333	chr14:54418396-54418665(-)$1	269	157	187	12.1577

#otherMatches

#Seq PSSM
GGGGGUGGGGCCUGCAUGGGGUGGGGCUGU	chr9:139904666-139904966(-)$1	300	2	32	13.9418
GCAGCCUUCUCCAGCUGCCUGGGGGAGGGU	chr9:140347334-140347564(-)$1	230	143	173	13.1570
AGGGCAGGAGGUUGGAGCAGCCCUGCCCAG	chr11:67810675-67810936(+)$1	261	117	147	14.3453
GCCGUUGGCUUUGAGUAUCAAGGCAAAACG	chr11:70265862-70266136(+)$1	274	48	78	11.6102
GGGUGGUGGCUUUCGUCCAAGGGCCAGCGG	chr17:77078044-77078299(+)$1	255	103	133	11.1848
GGCGCGGCACCAGCACCAGCUGCCCGCGCC	chr2:128180682-128180991(+)$1	309	122	152	14.8700
AUCAUGGCAAUUGUCAUUAGCAACAUGGCU	chr1:44442124-44442392(+)$1	268	174	204	12.5632
GCAGCCUUCUCCAGCUGCCUGGGGGAGGGU	chr9:140347388-140347614(-)$1	226	193	223	13.1570
CCCCGGGCGGGGGAGGACUCCAGGCCUGGG	chr17:60556496-60556861(+)$1	365	168	198	12.4480
GCCGCUGGGGGGCCCGACAGGCCCCUCGGC	chr4:144106170-144106394(+)$1	224	108	138	12.5955
GCCGCCCGGCUCCUCUCGGGAAAGCGGGGU	chr13:50571174-50571467(+)$1	293	110	140	12.2875
GUCCCCAUAUCUCUGGGAGGGCCACGGGGA	chr5:179050391-179050697(-)$1	306	130	160	13.2960
GCAGCCUUCUCCAGCUGCCUGGGGGAGGGU	chr9:140347364-140347588(-)$1	224	167	197	11.6883
CUUCUGUGCAGGAGAUGUCCUCUGAGUACC	chr17:79865281-79865532(-)$1	251	47	77	11.4455
UGGGGGGCUCGGUGAGCAGCCGCCGUGUCC	chr11:721152-721409(+)$1	257	94	124	11.2805
UGCGCACCUCUCCGCAUCUCUGGCCCGGUG	chr12:7023720-7023969(+)$1	249	183	213	11.0551
GCCAGAGCAGGCCAUGUGGGCUGCAGCUGU	chr9:135930323-135930613(+)$1	290	226	256	12.1332
AGGGACCAUGAAGCGCCAAAGCUAAGGAGC	chr7:150774541-150774786(-)$1	245	143	173	12.5474
CGGGCCCAUGGGCAGCUUGCUGUGGGGCAG	chr16:88718714-88718961(-)$1	247	142	172	12.3376
CCGCGGCGAAGCACGUGGUGCGGGCCCGGA	chr17:74732712-74732968(-)$1	256	159	189	13.4943
CCUGCAGGCCGGCAGCCUGCUGGCAGUGGA	chr20:57226350-57226602(+)$1	252	55	85	10.4865
UGCAGUACGUGAUUCUUGAUCCCGAGCUUC	chr6:74230519-74230781(-)$1	262	145	175	12.7106
UGCGGGAGGGCAGCGGGAGCUGGUGUUAGC	chr7:150777605-150777858(-)$1	253	113	143	11.6432
AAGCCCUGGGGAAGAAGAGUUCGGGUUACA	chr14:54418396-54418665(-)$1	269	157	187	12.1577

#DB
.(.(((...((((.....))))...))).)	chr9:139904666-139904966(-)$1	1	2	32	13.9418
(((.((((((((((....)))))))))).)	chr9:140347334-140347564(-)$1	1	143	173	13.1570
.(((((((..((((...))))))))))).)	chr11:67810675-67810936(+)$1	1	117	147	14.3453
)))))))(((((((...)))))))((((((	chr11:70265862-70266136(+)$1	1	48	78	11.6102
((((.((((((((......))))))).).)	chr17:77078044-77078299(+)$1	1	103	133	11.1848
(((((((...((((....)))).)))))))	chr2:128180682-128180991(+)$1	1	122	152	14.8700
((((((....((((.....))))))))).)	chr1:44442124-44442392(+)$1	1	174	204	12.5632
(((.((((((((((....)))))))))).)	chr9:140347388-140347614(-)$1	1	193	223	13.1570
((((((((.((((....))))..)))))))	chr17:60556496-60556861(+)$1	1	168	198	12.4480
((((((((((((((.....)))))))))))	chr4:144106170-144106394(+)$1	1	108	138	12.5955
(((((((.((((((...))))..)).))))	chr13:50571174-50571467(+)$1	1	110	140	12.2875
((((((....((((...))))....)))))	chr5:179050391-179050697(-)$1	1	130	160	13.2960
....((((((((((....))))))))))))	chr9:140347364-140347588(-)$1	1	167	197	11.6883
(((((((((.((((.....))))..))).)	chr17:79865281-79865532(-)$1	1	47	77	11.4455
((((((((.(((((......))))).))))	chr11:721152-721409(+)$1	1	94	124	11.2805
.(((((((...(((......)))...))))	chr12:7023720-7023969(+)$1	1	183	213	11.0551
((((.(((.((((.....))))...))).)	chr9:135930323-135930613(+)$1	1	226	256	12.1332
((((..(....(((......)))...)..)	chr7:150774541-150774786(-)$1	1	143	173	12.5474
(..((((...((((...))))...))))..	chr16:88718714-88718961(-)$1	1	142	172	12.3376
(((.(((...((((...))))..)))))))	chr17:74732712-74732968(-)$1	1	159	189	13.4943
((.((..(((((((...))))))).)))))	chr20:57226350-57226602(+)$1	1	55	85	10.4865
((.(((.((.((((...)))).)).))).)	chr6:74230519-74230781(-)$1	1	145	175	12.7106
(((.(((.(.((((....)))).).))..)	chr7:150777605-150777858(-)$1	1	113	143	11.6432
.(((((....(((......))))))))...	chr14:54418396-54418665(-)$1	1	157	187	12.1577

#PSSM
c : 0.20	[ : 0.16	e : 0.16	g : 0.12	i : 0.08	f : 0.08	= : 0.04	b : 0.04	# : 0.04	d : 0.04	
e : 0.24	g : 0.16	c : 0.12	i : 0.08	b : 0.08	f : 0.08	a : 0.04	= : 0.04	# : 0.04	d : 0.04	! : 0.04	
e : 0.24	[ : 0.12	g : 0.12	c : 0.08	= : 0.08	i : 0.08	f : 0.08	# : 0.04	b : 0.04	d : 0.04	! : 0.04	
e : 0.20	[ : 0.16	g : 0.12	c : 0.08	= : 0.08	i : 0.08	f : 0.08	d : 0.08	# : 0.04	b : 0.04	
= : 0.20	c : 0.12	g : 0.12	e : 0.12	[ : 0.08	i : 0.08	f : 0.08	! : 0.04	d : 0.04	b : 0.04	a : 0.04	
= : 0.20	c : 0.16	g : 0.12	e : 0.12	i : 0.08	f : 0.08	! : 0.08	a : 0.04	d : 0.04	b : 0.04	
= : 0.20	g : 0.16	# : 0.12	c : 0.12	i : 0.08	" : 0.04	e : 0.04	a : 0.04	d : 0.04	! : 0.04	[ : 0.04	b : 0.04	
" : 0.16	= : 0.16	g : 0.16	# : 0.16	i : 0.08	[ : 0.08	c : 0.08	e : 0.04	b : 0.04	
" : 0.20	= : 0.16	# : 0.16	g : 0.12	[ : 0.12	b : 0.08	! : 0.04	c : 0.04	a : 0.04	
= : 0.16	" : 0.16	# : 0.16	d : 0.12	g : 0.12	[ : 0.12	! : 0.04	b : 0.04	e : 0.04	
d : 0.54	= : 0.16	g : 0.12	e : 0.04	" : 0.04	# : 0.04	c : 0.04	
d : 0.54	= : 0.16	g : 0.12	c : 0.12	e : 0.04	
d : 0.54	= : 0.16	g : 0.12	c : 0.12	e : 0.04	
d : 0.41	= : 0.16	n : 0.08	g : 0.08	o : 0.08	c : 0.08	m : 0.04	e : 0.04	
l : 0.33	m : 0.24	n : 0.20	o : 0.20	
l : 0.33	m : 0.24	n : 0.20	o : 0.20	
l : 0.33	m : 0.24	n : 0.20	o : 0.20	
d : 0.29	n : 0.20	m : 0.20	o : 0.20	g : 0.08	
d : 0.45	o : 0.20	= : 0.12	n : 0.12	g : 0.08	
d : 0.54	= : 0.16	g : 0.12	o : 0.12	c : 0.04	
d : 0.54	= : 0.16	g : 0.12	c : 0.12	e : 0.04	
d : 0.24	= : 0.16	g : 0.16	2 : 0.12	c : 0.12	4 : 0.04	e : 0.04	3 : 0.04	] : 0.04	
= : 0.16	g : 0.16	3 : 0.12	2 : 0.12	] : 0.08	d : 0.08	e : 0.08	c : 0.08	4 : 0.04	b : 0.04	
3 : 0.20	= : 0.20	g : 0.16	e : 0.12	b : 0.08	i : 0.04	4 : 0.04	2 : 0.04	c : 0.04	a : 0.04	
= : 0.20	3 : 0.16	e : 0.12	] : 0.12	g : 0.08	i : 0.08	b : 0.04	4 : 0.04	2 : 0.04	d : 0.04	c : 0.04	
c : 0.20	= : 0.20	g : 0.08	i : 0.08	e : 0.08	] : 0.08	3 : 0.08	b : 0.08	f : 0.04	d : 0.04	
= : 0.20	c : 0.16	e : 0.16	i : 0.12	g : 0.08	b : 0.08	] : 0.04	f : 0.04	a : 0.04	d : 0.04	
= : 0.20	c : 0.16	g : 0.12	i : 0.12	e : 0.12	2 : 0.08	a : 0.04	f : 0.04	d : 0.04	3 : 0.04	
] : 0.37	i : 0.12	= : 0.08	g : 0.08	e : 0.08	2 : 0.08	f : 0.04	b : 0.04	6 : 0.04	3 : 0.04	
c : 0.20	e : 0.16	i : 0.12	a : 0.08	= : 0.08	g : 0.08	f : 0.08	b : 0.04	d : 0.04	6 : 0.04	3 : 0.04	

#score	298.4375278057541
#seq	24
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_UTR_m3_run2.txt

#BEAR
eee"""eeeee!!cccqqqqqqqqccceeeee333eee	chr14:24610356-24610648(-)$1	292	180	218	17.4065
!!ccc[ggggggg[bbqqqqqqqqbbggggggg22ccc	chr17:7214740-7214994(+)$1	254	158	196	19.6854
cc[bb[ffffff[cccqqqqqqqqccc]ffffff]bb]	chr17:42401898-42402130(-)$1	232	34	72	16.1999
####ggggggg[bb[aqqqqqqqqa333bbggggggg3	chr3:52021190-52021429(+)$1	239	194	232	17.2628
iiiiii$$$$$eeeeeqqqqqqqqeeeee4444iiiii	chr2:61728997-61729252(-)$1	255	177	215	16.5901
ggggg####eeeeebbqqqqqqqqbb]eeeeegggggg	chr12:2930696-2930987(+)$1	291	49	87	18.7216
eeeee[bb!!ffffffrrrrrrrrrffffff]bbeeee	chr17:42266824-42267120(+)$1	296	57	95	11.0806
!!bb$$$$$gggggggqqqqqqqqggggggg4444bb2	chr2:176046135-176046427(-)$1	292	207	245	16.6841
ccc==========[bbqqqqqqqqbb==========22	chr3:9956206-9956520(+)$1	314	104	142	19.8610
d:===========[bbqqqqqqqqbb]===========	chr16:4736232-4736483(+)$1	251	122	160	19.5441
cc]ddddccc[bb[bbqqqqqqqqbb]bb]cccdddd[	chr7:54826631-54826891(-)$1	260	49	87	16.4431
::ccc[bb[dddd[bbqqqqqqqqbb]dddd]bb]ccc	chr12:53400151-53400408(+)$1	257	153	191	16.2985
hhh!!eeeeebb!!bbqqqqqqqqbb22bb]eeeee33	chr7:44788403-44788708(+)$1	305	167	205	16.3467
=[ffffffa[ccc[bbaqqqqqqqqa]bb]ccc]a]ff	chr17:1587832-1588162(-)$1	330	202	240	15.9841
!a!!bbddddccc[bbqqqqqqqqbb]ccc]dddd]bb	chr16:67574197-67574477(+)$1	280	98	136	17.5456
""ccc[ccc[ffffffrrrrrrrrrffffff]cccccc	chr5:179044942-179045213(-)$1	271	46	84	13.1323
ffff$$$$$gggggggrrrrrrrrrgggggggffffff	chr3:127774367-127774638(+)$1	271	97	135	11.8697
eeeee####eeeee[aqqqqqqqqa22eeeee4444ee	chr1:47779492-47779809(-)$1	317	231	269	16.8812
:dddd[ddddffffffqqqqqqqqffffff22dddd]d	chr2:63816145-63816402(+)$1	257	190	228	14.3480
gg[ccc[gggggggbbqqqqqqqqbb]ggggggg22cc	chr20:61584245-61584500(+)$1	255	145	183	19.0751
Ebb[ggggggg[a[bbqqqqqqqqbba]ggggggg]bb	chr2:58273927-58274197(+)$1	270	5	43	17.5237
[bb[============ssssssssss============	chr16:31202156-31202452(+)$1	296	81	119	14.0118
""bb[===========qqqqqqqq===========]bb	chr10:88853860-88854131(-)$1	271	208	246	18.7712
]ddddddddddddcccqqqqqqqqccc4444dddd]dd	chr8:145742733-145742977(-)$1	244	134	172	15.9209
eeebb[eeeee!!cccqqqqqqqqccc22eeeee]bb2	chr14:23445742-23445995(-)$1	253	31	69	16.0581
=========ccc[cccqqqqqqqqccc]ccc]======	chr22:20067942-20068250(+)$1	308	39	77	19.0550
hhhcccffffff[cccqqqqqqqqccc]ffffff]ccc	chr11:61573894-61574182(-)$1	288	205	243	16.3441
ccccc####gggggggqqqqqqqqggggggg333ccce	chrX:20284612-20284830(-)$1	218	95	133	18.5033
====[dddd!!bb[bbqqqqqqqqbb]bbdddd]====	chr14:24761481-24761788(-)$1	307	195	233	17.8899
[a[bb[bb[dddd[bbqqqqqqqqbb22dddd]bb]bb	chr22:50684153-50684431(-)$1	278	124	162	17.1533
ccc[bbccc[ccc[bbqqqqqqqqbbcccccc]bbccc	chr20:62526421-62526679(+)$1	258	57	95	17.6272
eeee####ddddddddqqqqqqqqdddd4444dddd22	chr19:19105040-19105274(-)$1	234	79	117	15.5704
[dddd$$$$$gggggggqqqqqqqqggggggg333ddd	chr1:113249529-113249786(-)$1	257	110	148	15.1669
eeeeee!!ddddddddqqqqqqqqdddd333dddd]ee	chr1:31769939-31770213(+)$1	274	79	117	15.8532
::iiiiiiiii"""bbqqqqqqqqbb]iiiiiiiiiGG	chr17:73569955-73570207(+)$1	252	203	241	16.4274
[ccceeeee!!ddddrrrrrrrrrdddd333eeeee]c	chr6:3137594-3137857(+)$1	263	70	108	12.1996
ddddd[a####eeeeeqqqqqqqqeeeeea]dddd]dd	chr3:98241423-98241779(-)$1	356	90	128	16.2229
b[ccceeeee"""bbrrrrrrrrrbb333eeeee333c	chr12:49959897-49960168(-)$1	271	140	178	13.6222
fff[dddd[dddd[bbqqqqqqqqbb]dddd22dddd]	chr1:161193117-161193329(-)$1	212	168	206	16.7498
ddaccc"""bb[ddddqqqqqqqqddddbbccc]a]dd	chr2:114513664-114513970(-)$1	306	42	80	16.0031
iiiiiiibb[eeeeerrrrrrrrreeeee]bb]iiiii	chr21:46915223-46915477(+)$1	254	94	132	12.3287
b!!ccc[a[dddd[bbqqqqqqqqbb333dddd]a]cc	chr17:74381283-74381499(+)$1	216	8	46	19.2980
c!!ccc!!ffffffrrrrrrrrrffffffccc333ccc	chr17:76122891-76123181(-)$1	290	19	57	12.0978
a[ggggggg[eeeeesssssssssseeeee]ggggggg	chr1:228584506-228584921(-)$1	415	124	162	12.4174
cdddddddd[eeeeerrrrrrrrreeeeedddd]dddd	chr6:138188593-138188890(+)$1	297	49	87	11.3880
b[ffffffbb[a[a[aqqqqqqqqa]a]a]bb]fffff	chr22:39916705-39916973(+)$1	268	85	123	15.0885
%ccc"""dddd!!cccqqqqqqqqccc22dddd22ccc	chr16:31504645-31504914(-)$1	269	50	88	17.0742
!dddd[ccc!!ddddqqqqqqqqdddd333ccc22ddd	chr1:155658307-155658594(-)$1	287	173	211	15.1242
=$$$$$eeeeewwwwwwwwwwwwwweeeee========	chr3:9471592-9471869(+)$1	277	71	109	13.0138
!!ccc[gggggggssssssssssgggggggccc]dddd	chr3:38178046-38178330(-)$1	284	124	162	11.4520
[dddd[accc[cccbbrrrrrrrrrbb]ccc]ccc]a]	chr20:17949242-17949526(-)$1	284	200	238	13.9165
[hhhhhhhhdddd[bbqqqqqqqqbb]dddd]hhhhhh	chr19:18544209-18544448(+)$1	239	131	169	15.9008
FBBccc[gggggggbbqqqqqqqqbb22ggggggg]cc	chr16:11890856-11891081(-)$1	225	84	122	16.9109
ffffff[dddd[ddddqqqqqqqqdddddddd333fff	chr7:150774334-150774585(-)$1	251	203	241	15.6299

#otherMatches

#Seq PSSM
CUGCAUGCUGCCCGGUACCCACACGCCGCAGUCAACGG	chr14:24610356-24610648(-)$1	292	180	218	17.4065
CACGGUGCUGUCUGCCAUGACAGAGGAGGCAGCUGUUG	chr17:7214740-7214994(+)$1	254	158	196	19.6854
GCACCAGCCUAGAGCCAGGUAGGCGGCACUgggccggg	chr17:42401898-42402130(-)$1	232	34	72	16.1999
AGAGGGUGGCGUGGCCUAUAACGUGAUACCUGCCACCA	chr3:52021190-52021429(+)$1	239	194	232	17.2628
AAUGUUCGACCUACUUAGGAAAUAAAGUAUACUAAUAU	chr2:61728997-61729252(-)$1	255	177	215	16.5901
CCUGUGCACCCUGGAUGGUGAGCAAUGCUAGGAUGGGG	chr12:2930696-2930987(+)$1	291	49	87	18.7216
GCGGCUCAAAUUCCUCAAUGAUACCGAGGAGCUGGCUG	chr17:42266824-42267120(+)$1	296	57	95	11.0806
GACCUUAAGCCUCUUUUCCUCCGCAGAGAGGAAGCGGG	chr2:176046135-176046427(-)$1	292	207	245	16.6841
AGGGAGGCUGGGCACUGAGGAACUGGGCUUGGCCUCAU	chr3:9956206-9956520(+)$1	314	104	142	19.8610
GAGAGGAGCCCUCCCCUGCUCUCUGGCGGGGGUUCCUU	chr16:4736232-4736483(+)$1	251	122	160	19.5441
CUUCCCACCGGUCGGUACGGGCGAACGGGGCGGCCACA	chr7:54826631-54826891(-)$1	260	49	87	16.4431
AAGGACUGGGCUCUGAAACCCCCCUCCGAGCGUGAUCC	chr12:53400151-53400408(+)$1	257	153	191	16.2985
ccgggccaggccgggcggaggugagcggggUCCUGGGG	chr7:44788403-44788708(+)$1	305	167	205	16.3467
CGGGGUCCCCGGACGCCUUUCUGCUGCGCUUCUUGUGG	chr17:1587832-1588162(-)$1	330	202	240	15.9841
UGGAGGGAGUAUGCUGAAGAACCCCAAUAUGGCUCACC	chr16:67574197-67574477(+)$1	280	98	136	17.5456
AGGCGUGGUGCUUAUGGUGGAGGUACGUGAGGAUUCGU	chr5:179044942-179045213(-)$1	271	46	84	13.1323
GAGUGGCUGGAAACAGGAGUGCUGACUGUUUUGCUCUU	chr3:127774367-127774638(+)$1	271	97	135	11.8697
GGGGAGCUAGUGGGAGAAAUUAAGCAGUCCAUGAAAUC	chr1:47779492-47779809(-)$1	317	231	269	16.8812
GACCCAGUAAUGGGAAGGGAUUGAUUUCCACCUUGCGG	chr2:63816145-63816402(+)$1	257	190	228	14.3480
GGGAGGUGGAAGGAAGUGAGUGCCCUGUCCUUCCUCCC	chr20:61584245-61584500(+)$1	255	145	183	19.0751
GGCUCCGCCUCGUCGCAGCGGCAGGUAGGAGGCGGUGC	chr2:58273927-58274197(+)$1	270	5	43	17.5237
ACAUAGGGGAAUGGGAAUAUGAUAGAUCUUGUUUCUUU	chr16:31202156-31202452(+)$1	296	81	119	14.0118
UGUGGAUGGUGAUUUUUCCGCCUUAAAAUCAUCAUGCG	chr10:88853860-88854131(-)$1	271	208	246	18.7712
CGGCGGGCUCCGCAGCUCCGAGUCGCUCCCCGCGGCGG	chr8:145742733-145742977(-)$1	244	134	172	15.9209
UGGGCUGUGGGAUAGGUUCCAGCCCCUUCUCUAUUGUU	chr14:23445742-23445995(-)$1	253	31	69	16.0581
ucccgccucccuccgggaccgaggccgcgggcggggcg	chr22:20067942-20068250(+)$1	308	39	77	19.0550
GCCAUCUCAGCUGAGCGAAGUGAAGUUAGGCUGAUGAU	chr11:61573894-61574182(-)$1	288	205	243	16.3441
CUGGCGGACCCGUGGCAGAAGAUGGCUGUGGAGAGCCC	chrX:20284612-20284830(-)$1	218	95	133	18.5033
AGGGCAGGAAAGUGACAUGGCUAGGUGGCUCUUACCCU	chr14:24761481-24761788(-)$1	307	195	233	17.8899
UGGGACGAGGGAAAGGACCAGUGACUGCUUCCGUCUUC	chr22:50684153-50684431(-)$1	278	124	162	17.1533
GCGUGCGUGAGCGUGCUCGUCUccgcugccgcugccgc	chr20:62526421-62526679(+)$1	258	57	95	17.6272
CACAAGCGGGCCAACAAAUAGGUAUGUUCACAGGCCAG	chr19:19105040-19105274(-)$1	234	79	117	15.5704
CGGUGGGGCGUCUUGGGAACUCGUCCCCAGGAGAGCAC	chr1:113249529-113249786(-)$1	257	110	148	15.1669
GACAGCAAGGGGUGGGAGGCGGGCCCCGAGUCCCCAGC	chr1:31769939-31770213(+)$1	274	79	117	15.8532
UUGGGCUGGGAAUAGAGACGGCAUUCCUUCCAGCCCUG	chr17:73569955-73570207(+)$1	252	203	241	16.4274
ACUUUGCCAGAACCUGUGAAAAGUGGGUGGAUGGCAUA	chr6:3137594-3137857(+)$1	263	70	108	12.1996
AGUGAGCGGGACCUGCGUCGCCGGGCAGGGGUCGCGUC	chr3:98241423-98241779(-)$1	356	90	128	16.2229
GGCCCGAAUCCACCAUUUCUCUCUUGCUAGAUUCUCAG	chr12:49959897-49960168(-)$1	271	140	178	13.6222
CUCACCAUCUGCAGCCUUGAAGGUGGGUGUGAUAUGGA	chr1:161193117-161193329(-)$1	212	168	206	16.7498
GCCCCGACAUCACCGGAGCCCAAACCGGGACGGAGUGC	chr2:114513664-114513970(-)$1	306	42	80	16.0031
GAGAUGCCAGCCUUGGAUUUGGCAUGAGGGUGAGUGUC	chr21:46915223-46915477(+)$1	254	94	132	12.3287
UCAUCCGUCGGGCCGGAACCGAACCCCAAGCCCCAGGG	chr17:74381283-74381499(+)$1	216	8	46	19.2980
UUCUGGCAUGAGGCUUAUUCGGUGCCUCACCAUUUAUG	chr17:76122891-76123181(-)$1	290	19	57	12.0978
GGGACCCAGCUGUUGGCCAUGGCGACAACACCUGGGUU	chr1:228584506-228584921(-)$1	415	124	162	12.4174
GCCUCCCGGAGAGGUAACCGCCGCGCCUCCCGGAGAGG	chr6:138188593-138188890(+)$1	297	49	87	11.3880
UGGGGCCGGCGCGGGUUUUGGAUUGGUGGGGUGCGGCC	chr22:39916705-39916973(+)$1	268	85	123	15.0885
UGACCCCAGCUUCCCACAGGUUUCUGGCCAGCUCCGUC	chr16:31504645-31504914(-)$1	269	50	88	17.0742
GCUUGACAGGGUCUGAGGGGGAGUGGAGAACUGGGCGA	chr1:155658307-155658594(-)$1	287	173	211	15.1242
AAAAAUCCUGGUGUUUUGAAUAUGUUCAGGUCCAGUUC	chr3:9471592-9471869(+)$1	277	71	109	13.0138
GGGUCACUGCGGCUGCUCUUUCUGCUGCAGGACACCAC	chr3:38178046-38178330(-)$1	284	124	162	11.4520
GUCUUUGCCCGGCUCCAAGAUGGACGGCAGCGGGGACU	chr20:17949242-17949526(-)$1	284	200	238	13.9165
GGGGCAUGGCGCCAGCACGUCUGAGCCGGUGCCCGUGU	chr19:18544209-18544448(+)$1	239	131	169	15.9008
GGCGCGUCGUCCCCACAGGUAGGGGUAGGGGGACGCCG	chr16:11890856-11891081(-)$1	225	84	122	16.9109
GGCGGCAGGCCCGGGGAGACGGAGCCCUGGCUAAGGCC	chr7:150774334-150774585(-)$1	251	203	241	15.6299

#DB
(((...(((((..(((........))))))))...)))	chr14:24610356-24610648(-)$1	1	180	218	17.4065
..(((.(((((((.((........)))))))))..)))	chr17:7214740-7214994(+)$1	1	158	196	19.6854
((.((.((((((.(((........))).)))))).)).	chr17:42401898-42402130(-)$1	1	34	72	16.1999
....(((((((.((.(........)...))))))))).	chr3:52021190-52021429(+)$1	1	194	232	17.2628
((((((.....(((((........)))))....)))))	chr2:61728997-61729252(-)$1	1	177	215	16.5901
(((((....(((((((........)).)))))))))))	chr12:2930696-2930987(+)$1	1	49	87	18.7216
(((((.((..((((((.........)))))).))))))	chr17:42266824-42267120(+)$1	1	57	95	11.0806
..((.....(((((((........)))))))....)).	chr2:176046135-176046427(-)$1	1	207	245	16.6841
(((((((((((((.((........))))))))))))..	chr3:9956206-9956520(+)$1	1	104	142	19.8610
).(((((((((((.((........)).)))))))))))	chr16:4736232-4736483(+)$1	1	122	160	19.5441
)).))))(((.((.((........)).)).)))((((.	chr7:54826631-54826891(-)$1	1	49	87	16.4431
..(((.((.((((.((........)).)))).)).)))	chr12:53400151-53400408(+)$1	1	153	191	16.2985
(((..(((((((..((........))..)).)))))..	chr7:44788403-44788708(+)$1	1	167	205	16.3467
(.(((((((.(((.(((........).)).))).).))	chr17:1587832-1588162(-)$1	1	202	240	15.9841
.(..(((((((((.((........)).))).)))).))	chr16:67574197-67574477(+)$1	1	98	136	17.5456
..(((.(((.((((((.........)))))).))))))	chr5:179044942-179045213(-)$1	1	46	84	13.1323
((((.....(((((((.........)))))))))))))	chr3:127774367-127774638(+)$1	1	97	135	11.8697
(((((....(((((.(........)..)))))....))	chr1:47779492-47779809(-)$1	1	231	269	16.8812
.((((.((((((((((........))))))..)))).)	chr2:63816145-63816402(+)$1	1	190	228	14.3480
((.(((.(((((((((........)).)))))))..))	chr20:61584245-61584500(+)$1	1	145	183	19.0751
(((.(((((((.(.((........))).))))))).))	chr2:58273927-58274197(+)$1	1	5	43	17.5237
.((.((((((((((((..........))))))))))))	chr16:31202156-31202452(+)$1	1	81	119	14.0118
..((.(((((((((((........))))))))))).))	chr10:88853860-88854131(-)$1	1	208	246	18.7712
.))))(((((((((((........)))....)))).))	chr8:145742733-145742977(-)$1	1	134	172	15.9209
(((((.(((((..(((........)))..))))).)).	chr14:23445742-23445995(-)$1	1	31	69	16.0581
((((((((((((.(((........))).))).))))))	chr22:20067942-20068250(+)$1	1	39	77	19.0550
((((((((((((.(((........))).)))))).)))	chr11:61573894-61574182(-)$1	1	205	243	16.3441
))(((....(((((((........)))))))...)))(	chrX:20284612-20284830(-)$1	1	95	133	18.5033
((((.((((..((.((........)).)))))).))))	chr14:24761481-24761788(-)$1	1	195	233	17.8899
.(.((.((.((((.((........))..)))).)).))	chr22:50684153-50684431(-)$1	1	124	162	17.1533
(((.(((((.(((.((........)))))))).)))))	chr20:62526421-62526679(+)$1	1	57	95	17.6272
((((....((((((((........))))....))))..	chr19:19105040-19105274(-)$1	1	79	117	15.5704
.((((.....(((((((........)))))))...)))	chr1:113249529-113249786(-)$1	1	110	148	15.1669
((((((..((((((((........))))...)))).))	chr1:31769939-31770213(+)$1	1	79	117	15.8532
..(((((((((...((........)).)))))))))))	chr17:73569955-73570207(+)$1	1	203	241	16.4274
.((((((((..((((.........))))...))))).)	chr6:3137594-3137857(+)$1	1	70	108	12.1996
(((((.(....(((((........)))))).)))).))	chr3:98241423-98241779(-)$1	1	90	128	16.2229
(.((((((((...((.........))...)))))...)	chr12:49959897-49960168(-)$1	1	140	178	13.6222
(((.((((.((((.((........)).))))..)))).	chr1:161193117-161193329(-)$1	1	168	206	16.7498
((((((...((.((((........))))))))).).))	chr2:114513664-114513970(-)$1	1	42	80	16.0031
(((((((((.(((((.........))))).)).)))))	chr21:46915223-46915477(+)$1	1	94	132	12.3287
(..(((.(.((((.((........))...)))).).))	chr17:74381283-74381499(+)$1	1	8	46	19.2980
(..(((..((((((.........)))))))))...)))	chr17:76122891-76123181(-)$1	1	19	57	12.0978
(.(((((((.(((((..........))))).)))))))	chr1:228584506-228584921(-)$1	1	124	162	12.4174
(((((((((.(((((.........))))))))).))))	chr6:138188593-138188890(+)$1	1	49	87	11.3880
(.((((((((.(.(.(........).).).)).)))))	chr22:39916705-39916973(+)$1	1	85	123	15.0885
.(((...((((..(((........)))..))))..)))	chr16:31504645-31504914(-)$1	1	50	88	17.0742
.((((.(((..((((........))))...)))..)))	chr1:155658307-155658594(-)$1	1	173	211	15.1242
(.....(((((..............)))))))))))))	chr3:9471592-9471869(+)$1	1	71	109	13.0138
..(((.(((((((..........)))))))))).))))	chr3:38178046-38178330(-)$1	1	124	162	11.4520
.((((.((((.(((((.........)).))).))).).	chr20:17949242-17949526(-)$1	1	200	238	13.9165
.((((((((((((.((........)).)))).))))))	chr19:18544209-18544448(+)$1	1	131	169	15.9008
((((((.(((((((((........))..))))))).))	chr16:11890856-11891081(-)$1	1	84	122	16.9109
((((((.((((.((((........))))))))...)))	chr7:150774334-150774585(-)$1	1	203	241	15.6299

#PSSM
c : 0.12	e : 0.11	[ : 0.11	! : 0.09	= : 0.07	d : 0.05	: : 0.05	f : 0.05	b : 0.05	i : 0.03	g : 0.03	h : 0.03	" : 0.03	# : 0.01	E : 0.01	] : 0.01	a : 0.01	% : 0.01	F : 0.01	
d : 0.14	c : 0.12	e : 0.11	! : 0.09	[ : 0.07	: : 0.05	h : 0.05	f : 0.05	i : 0.03	g : 0.03	a : 0.03	" : 0.03	b : 0.03	= : 0.03	# : 0.01	$ : 0.01	B : 0.01	
c : 0.18	d : 0.12	e : 0.11	f : 0.09	b : 0.07	[ : 0.05	i : 0.05	= : 0.05	h : 0.05	! : 0.05	g : 0.03	# : 0.01	] : 0.01	a : 0.01	$ : 0.01	B : 0.01	
c : 0.25	d : 0.14	b : 0.09	e : 0.07	= : 0.07	f : 0.07	[ : 0.07	i : 0.05	g : 0.03	! : 0.03	" : 0.01	# : 0.01	$ : 0.01	h : 0.01	
c : 0.22	d : 0.16	b : 0.09	g : 0.07	e : 0.07	= : 0.07	i : 0.05	$ : 0.05	f : 0.05	" : 0.03	[ : 0.03	! : 0.01	# : 0.01	h : 0.01	
[ : 0.22	c : 0.11	= : 0.09	d : 0.09	# : 0.07	$ : 0.07	e : 0.07	g : 0.05	i : 0.05	f : 0.05	" : 0.03	b : 0.03	h : 0.01	
d : 0.12	e : 0.11	g : 0.09	= : 0.09	f : 0.07	$ : 0.07	# : 0.07	[ : 0.07	b : 0.05	c : 0.05	! : 0.03	i : 0.03	a : 0.03	" : 0.03	h : 0.01	
d : 0.14	g : 0.12	e : 0.11	# : 0.09	= : 0.09	c : 0.09	f : 0.07	$ : 0.07	b : 0.07	! : 0.03	i : 0.01	" : 0.01	a : 0.01	h : 0.01	
d : 0.16	g : 0.12	e : 0.11	= : 0.09	c : 0.09	$ : 0.07	# : 0.07	[ : 0.07	f : 0.05	b : 0.03	! : 0.01	a : 0.01	i : 0.01	" : 0.01	h : 0.01	
d : 0.22	g : 0.16	e : 0.12	[ : 0.11	! : 0.07	= : 0.07	f : 0.05	c : 0.05	$ : 0.03	b : 0.03	i : 0.01	# : 0.01	
g : 0.18	d : 0.18	e : 0.14	f : 0.11	= : 0.07	c : 0.07	[ : 0.05	! : 0.05	b : 0.03	$ : 0.01	i : 0.01	# : 0.01	" : 0.01	
d : 0.18	g : 0.14	e : 0.12	f : 0.11	c : 0.09	[ : 0.07	= : 0.07	! : 0.05	b : 0.05	" : 0.03	a : 0.01	w : 0.01	
d : 0.22	g : 0.14	e : 0.12	! : 0.07	[ : 0.07	f : 0.07	= : 0.07	c : 0.07	b : 0.05	" : 0.03	a : 0.01	w : 0.01	
[ : 0.25	c : 0.14	e : 0.12	g : 0.11	d : 0.11	f : 0.07	b : 0.03	= : 0.03	! : 0.01	" : 0.01	a : 0.01	w : 0.01	s : 0.01	
b : 0.38	c : 0.12	d : 0.11	e : 0.09	g : 0.07	[ : 0.05	f : 0.05	= : 0.03	r : 0.01	w : 0.01	s : 0.01	
b : 0.37	c : 0.12	r : 0.09	g : 0.07	d : 0.07	a : 0.05	f : 0.05	e : 0.03	= : 0.03	s : 0.03	q : 0.01	w : 0.01	
q : 0.72	r : 0.16	s : 0.05	a : 0.01	g : 0.01	w : 0.01	
q : 0.75	r : 0.16	s : 0.05	w : 0.01	
q : 0.75	r : 0.16	s : 0.05	w : 0.01	
q : 0.75	r : 0.16	s : 0.05	w : 0.01	
q : 0.75	r : 0.16	s : 0.05	w : 0.01	
q : 0.75	r : 0.16	s : 0.05	w : 0.01	
q : 0.75	r : 0.16	s : 0.05	w : 0.01	
q : 0.74	r : 0.14	s : 0.03	f : 0.01	d : 0.01	w : 0.01	g : 0.01	
b : 0.35	c : 0.12	d : 0.11	e : 0.07	r : 0.07	a : 0.05	g : 0.05	q : 0.03	f : 0.03	s : 0.03	= : 0.01	w : 0.01	
b : 0.37	c : 0.12	e : 0.11	d : 0.11	g : 0.09	f : 0.07	3 : 0.01	a : 0.01	2 : 0.01	s : 0.01	= : 0.01	] : 0.01	
] : 0.20	c : 0.14	g : 0.11	e : 0.11	d : 0.11	f : 0.07	2 : 0.07	3 : 0.05	= : 0.05	a : 0.03	b : 0.01	
e : 0.16	d : 0.14	g : 0.12	] : 0.11	2 : 0.09	3 : 0.07	f : 0.07	= : 0.07	b : 0.05	c : 0.03	4 : 0.01	i : 0.01	
e : 0.16	g : 0.16	f : 0.11	b : 0.11	d : 0.09	3 : 0.09	= : 0.07	c : 0.07	4 : 0.03	2 : 0.03	i : 0.01	a : 0.01	
g : 0.16	d : 0.16	e : 0.12	f : 0.09	c : 0.09	= : 0.07	] : 0.07	b : 0.05	4 : 0.05	3 : 0.05	i : 0.01	a : 0.01	
g : 0.16	c : 0.16	d : 0.16	e : 0.09	= : 0.09	f : 0.07	] : 0.07	4 : 0.05	3 : 0.03	b : 0.03	2 : 0.01	i : 0.01	
d : 0.18	g : 0.14	e : 0.12	c : 0.12	] : 0.11	= : 0.09	4 : 0.05	f : 0.03	2 : 0.03	b : 0.03	3 : 0.01	i : 0.01	
d : 0.18	g : 0.12	c : 0.12	= : 0.11	3 : 0.09	e : 0.07	] : 0.07	f : 0.05	4 : 0.05	b : 0.03	i : 0.01	2 : 0.01	h : 0.01	
d : 0.14	g : 0.11	= : 0.11	] : 0.11	3 : 0.09	f : 0.07	b : 0.07	e : 0.07	2 : 0.05	i : 0.05	4 : 0.03	c : 0.03	h : 0.01	
d : 0.18	= : 0.12	3 : 0.09	g : 0.09	2 : 0.07	] : 0.07	i : 0.05	e : 0.05	a : 0.05	c : 0.05	4 : 0.03	f : 0.03	b : 0.03	h : 0.01	
] : 0.22	c : 0.14	d : 0.14	= : 0.11	e : 0.07	b : 0.05	g : 0.05	i : 0.05	f : 0.05	4 : 0.01	2 : 0.01	3 : 0.01	h : 0.01	
c : 0.20	d : 0.16	b : 0.12	= : 0.09	e : 0.07	f : 0.07	g : 0.05	i : 0.03	2 : 0.03	3 : 0.03	] : 0.03	G : 0.01	a : 0.01	h : 0.01	
c : 0.22	d : 0.14	e : 0.09	= : 0.09	2 : 0.07	f : 0.07	b : 0.07	] : 0.05	3 : 0.03	i : 0.03	g : 0.03	[ : 0.01	G : 0.01	h : 0.01	

#score	859.2779729058586
#seq	54
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_transcript_m1_run2.txt

#BEAR
==========[ddddllldddd22======	chr17:7480031-7480300(+)$1	269	150	180	11.6645
bbccc[bbccc[annnnna]ccc]bb]ccc	chr8:144940520-144940795(-)$1	275	87	117	9.5591
bb####ccc!!ddddllldddd22ccc333	chr6:37138064-37138340(+)$1	276	189	219	11.0603
dddd[ccc"""bbnnnnnbb333ccc]ddd	chr16:88870232-88870536(+)$1	304	154	184	8.9550
fff####eeeeeooooooeeeee4444fff	chr19:3977936-3978189(-)$1	253	110	140	9.0978
[gggggggcccaccclllccc]a]ccc]gg	chr10:17271230-17271578(+)$1	348	231	261	9.5474
bb[bb[a!!ddddoooooodddd22a]bb]	chr16:29818313-29818578(+)$1	265	114	144	12.0790
ee!!dddd!!eeeeellleeeee22dddd3	chr16:88870148-88870432(+)$1	284	205	235	9.5712
f!!bb[ddddcccnnnnnccc]dddd]bb]	chr16:29818737-29818993(+)$1	256	199	229	10.0940
d[dddd"""ddddmmmmdddd]dddddddd	chr11:62609020-62609227(-)$1	207	60	90	9.1556
fdddd!!a[ddddnnnnndddda22dddd]	chr19:50000886-50001152(+)$1	266	70	100	12.8956
ggggg[bb[ddddlllddddbbggggggg2	chr6:133136345-133136614(+)$1	269	197	227	9.3359
ccc[bbdddd[bbnnnnnbb]dddd]bb]c	chr1:200378970-200379196(-)$1	226	156	186	8.3069
fffff[bb"""ccclllccc]bb]ffffff	chr9:136216195-136216413(+)$1	218	165	195	8.6987
==========[ddddllldddd22======	chr17:7480100-7480360(+)$1	260	81	111	11.6645
fff[bb[dddd[annnnna]dddd]bb]ff	chr19:47290824-47291110(-)$1	286	187	217	9.5869
bb[dddd!!ddddmmmmdddd]dddd]bb]	chrX:152953830-152954113(+)$1	283	168	198	9.2134
ffff!!bb[ddddllldddd]bb22fffff	chr6:31802962-31803194(+)$1	232	105	135	9.9220
a[dddd[dddd"""aooooooa333ddddd	chr11:75115365-75115632(+)$1	267	85	115	9.0887
eeeee!!ddddbblllbb]dddd22eeeee	chr1:200378742-200378952(-)$1	210	31	61	8.9128
eeeeeccc[ccc[bblllbb]ccc]ccc33	chr17:27047460-27047733(+)$1	273	36	66	8.5422
:dddd####ddddoooooodddd]dddd::	chr16:30081050-30081284(+)$1	234	1	31	9.2327
iiiiiiiiiddddnnnnndddd:eeeee[b	chr1:27022545-27022809(+)$1	264	59	89	9.7523
ddccc####dddd[ccclllccc]dddd44	chr19:39340237-39340490(-)$1	253	148	178	8.5677

#otherMatches

#Seq PSSM
GCAGCCCUGGCAGUGUCCUACUUCCCAGGG	chr17:7480031-7480300(+)$1	269	150	180	11.6645
CCGCCAGGAGAAGAUGAGCAUCUACCAGGC	chr8:144940520-144940795(-)$1	275	87	117	9.5591
gccacagccccagGCAUAGCCUUCGGCACA	chr6:37138064-37138340(+)$1	276	189	219	11.0603
cgcgcccgcccgcccgccgcccccggACGC	chr16:88870232-88870536(+)$1	304	154	184	8.9550
UGUACAUGAAGGCGCGGCCCUUCCCCGACG	chr19:3977936-3978189(-)$1	253	110	140	9.0978
UGUUCGGCGGCCCGGGCACCGCGAGCCGGC	chr10:17271230-17271578(+)$1	348	231	261	9.5474
gccgucgcugccgcgcccccggccccugcc	chr16:29818313-29818578(+)$1	265	114	144	12.0790
GCCCCGGCCUCCGCUACCAGUGGCAGCCGC	chr16:88870148-88870432(+)$1	284	205	235	9.5712
GAACCAUGCCUGCGAGAUGUGUGGCAAGGC	chr16:29818737-29818993(+)$1	256	199	229	10.0940
gauggaauaggagcuugcuccguccacucc	chr11:62609020-62609227(-)$1	207	60	90	9.1556
CUUGUAGGUCCAGGUACAUUGGCAGAUGAU	chr19:50000886-50001152(+)$1	266	70	100	12.8956
CUUAUACUUAUCUGGCAGAUAGAUGAGAUG	chr6:133136345-133136614(+)$1	269	197	227	9.3359
GCGAGGCCUGGGGAAGAGUCGCAGGACCAU	chr1:200378970-200379196(-)$1	226	156	186	8.3069
GACAUGGAAUUUGAGCCUCACUCGGUGUCA	chr9:136216195-136216413(+)$1	218	165	195	8.6987
GCAGCCCUGGCAGUGUCCUACUUCCCAGGG	chr17:7480100-7480360(+)$1	260	81	111	11.6645
GCGGAUGAUCAUCUUGCCGCUGGUGGUGUG	chr19:47290824-47291110(-)$1	286	187	217	9.5869
ccccggcccggccgugcggcccgccgAGGC	chrX:152953830-152954113(+)$1	283	168	198	9.2134
GUGUGUCGCUGAUGCCAUCACCGCAGCGCU	chr6:31802962-31803194(+)$1	232	105	135	9.9220
GCCAUCUGUGUACCCUUCAGUGAUGACACG	chr11:75115365-75115632(+)$1	267	85	115	9.0887
GGUGGUCCCGGCCCGGGGCCCGGUUCCACC	chr1:200378742-200378952(-)$1	210	31	61	8.9128
UUCAGUGCUACUUUGUUUCAUAGUCGUAUC	chr17:27047460-27047733(+)$1	273	36	66	8.5422
AUGCCCAUUUGGACGGAUUUCCAUGGCAAC	chr16:30081050-30081284(+)$1	234	1	31	9.2327
GGGAAUGAGCCGGGAGAGCCGGGUCCCGAG	chr1:27022545-27022809(+)$1	264	59	89	9.7523
ggGGUGAGGCCAGGGCCCUAGGCGCUGGGA	chr19:39340237-39340490(-)$1	253	148	178	8.5677

#DB
((((((((((.((((...))))..))))))	chr17:7480031-7480300(+)$1	1	150	180	11.6645
(((((.(((((.(.....).))).)).)))	chr8:144940520-144940795(-)$1	1	87	117	9.5591
((....(((..((((...))))..)))...	chr6:37138064-37138340(+)$1	1	189	219	11.0603
((((.(((...((.....))...))).)))	chr16:88870232-88870536(+)$1	1	154	184	8.9550
(((....(((((......)))))....)))	chr19:3977936-3978189(-)$1	1	110	140	9.0978
.((((((((((((((...))).).))).))	chr10:17271230-17271578(+)$1	1	231	261	9.5474
((.((.(..((((......))))..).)).	chr16:29818313-29818578(+)$1	1	114	144	12.0790
((..((((..(((((...)))))..)))).	chr16:88870148-88870432(+)$1	1	205	235	9.5712
(..((.(((((((.....))).)))).)).	chr16:29818737-29818993(+)$1	1	199	229	10.0940
(.((((...((((....)))).))))))))	chr11:62609020-62609227(-)$1	1	60	90	9.1556
(((((..(.((((.....)))))..)))).	chr19:50000886-50001152(+)$1	1	70	100	12.8956
(((((.((.((((...))))))))))))).	chr6:133136345-133136614(+)$1	1	197	227	9.3359
(((.((((((.((.....)).)))).)).)	chr1:200378970-200379196(-)$1	1	156	186	8.3069
(((((.((...(((...))).)).))))))	chr9:136216195-136216413(+)$1	1	165	195	8.6987
((((((((((.((((...))))..))))))	chr17:7480100-7480360(+)$1	1	81	111	11.6645
(((.((.((((.(.....).)))).)).))	chr19:47290824-47291110(-)$1	1	187	217	9.5869
((.((((..((((....)))).)))).)).	chrX:152953830-152954113(+)$1	1	168	198	9.2134
((((..((.((((...)))).))..)))))	chr6:31802962-31803194(+)$1	1	105	135	9.9220
(.((((.((((...(......)...)))))	chr11:75115365-75115632(+)$1	1	85	115	9.0887
(((((..((((((...)).))))..)))))	chr1:200378742-200378952(-)$1	1	31	61	8.9128
((((((((.(((.((...)).))).)))..	chr17:27047460-27047733(+)$1	1	36	66	8.5422
.((((....((((......)))).))))..	chr16:30081050-30081284(+)$1	1	1	31	9.2327
)))))))))((((.....)))).(((((.(	chr1:27022545-27022809(+)$1	1	59	89	9.7523
))(((....((((.(((...))).))))..	chr19:39340237-39340490(-)$1	1	148	178	8.5677

#PSSM
f : 0.24	b : 0.16	d : 0.12	e : 0.12	= : 0.08	[ : 0.04	g : 0.04	c : 0.04	a : 0.04	: : 0.04	i : 0.04	
b : 0.16	d : 0.16	f : 0.16	e : 0.12	= : 0.08	g : 0.08	[ : 0.08	! : 0.04	c : 0.04	i : 0.04	
d : 0.20	f : 0.16	c : 0.12	= : 0.08	g : 0.08	[ : 0.08	! : 0.08	e : 0.08	# : 0.04	i : 0.04	
d : 0.24	= : 0.08	c : 0.08	# : 0.08	g : 0.08	b : 0.08	[ : 0.08	f : 0.08	e : 0.08	! : 0.04	i : 0.04	
d : 0.24	b : 0.16	= : 0.08	c : 0.08	# : 0.08	g : 0.08	e : 0.08	[ : 0.04	f : 0.04	! : 0.04	i : 0.04	
[ : 0.20	# : 0.16	d : 0.16	! : 0.12	= : 0.08	c : 0.08	b : 0.08	g : 0.04	i : 0.04	
b : 0.16	d : 0.16	c : 0.12	# : 0.12	= : 0.08	! : 0.08	[ : 0.08	g : 0.04	a : 0.04	" : 0.04	i : 0.04	
d : 0.24	b : 0.16	c : 0.12	= : 0.08	! : 0.08	# : 0.08	e : 0.04	g : 0.04	" : 0.04	a : 0.04	i : 0.04	
d : 0.20	[ : 0.16	c : 0.12	" : 0.12	! : 0.12	= : 0.08	# : 0.08	e : 0.04	i : 0.04	
d : 0.58	c : 0.12	= : 0.08	! : 0.08	" : 0.08	e : 0.04	
d : 0.50	c : 0.16	[ : 0.12	" : 0.08	e : 0.08	! : 0.04	
d : 0.50	b : 0.12	c : 0.12	[ : 0.08	e : 0.08	a : 0.04	" : 0.04	
d : 0.50	b : 0.12	c : 0.12	a : 0.08	o : 0.04	e : 0.04	" : 0.04	[ : 0.04	
n : 0.29	d : 0.12	o : 0.12	l : 0.12	c : 0.08	m : 0.08	e : 0.04	" : 0.04	b : 0.04	[ : 0.04	
n : 0.29	l : 0.16	d : 0.12	o : 0.12	c : 0.08	m : 0.08	e : 0.04	a : 0.04	b : 0.04	
l : 0.41	n : 0.29	o : 0.16	m : 0.08	c : 0.04	
l : 0.29	n : 0.29	o : 0.16	m : 0.08	d : 0.08	b : 0.04	c : 0.04	
l : 0.29	n : 0.29	o : 0.16	d : 0.16	c : 0.04	b : 0.04	
d : 0.37	b : 0.12	c : 0.12	o : 0.12	a : 0.08	e : 0.08	] : 0.04	l : 0.04	
d : 0.50	b : 0.12	c : 0.12	] : 0.08	e : 0.08	o : 0.04	l : 0.04	
d : 0.45	c : 0.16	] : 0.16	e : 0.08	3 : 0.04	b : 0.04	o : 0.04	
d : 0.41	] : 0.16	c : 0.12	b : 0.12	e : 0.08	3 : 0.04	a : 0.04	
d : 0.33	2 : 0.12	c : 0.12	3 : 0.08	e : 0.08	a : 0.08	b : 0.08	g : 0.04	: : 0.04	
2 : 0.33	] : 0.20	d : 0.20	c : 0.08	4 : 0.04	g : 0.04	3 : 0.04	e : 0.04	
d : 0.24	2 : 0.20	c : 0.12	= : 0.08	] : 0.08	b : 0.04	4 : 0.04	g : 0.04	f : 0.04	3 : 0.04	e : 0.04	
d : 0.33	c : 0.16	= : 0.08	b : 0.08	f : 0.08	e : 0.08	4 : 0.04	a : 0.04	g : 0.04	] : 0.04	
d : 0.24	] : 0.20	c : 0.12	= : 0.08	b : 0.08	f : 0.08	e : 0.08	4 : 0.04	g : 0.04	
d : 0.29	b : 0.16	f : 0.12	= : 0.08	c : 0.08	] : 0.08	e : 0.08	3 : 0.04	g : 0.04	
d : 0.20	f : 0.16	b : 0.12	= : 0.08	3 : 0.08	g : 0.08	c : 0.04	] : 0.04	e : 0.04	: : 0.04	[ : 0.04	4 : 0.04	
f : 0.16	] : 0.16	3 : 0.12	d : 0.12	= : 0.08	c : 0.08	g : 0.04	2 : 0.04	e : 0.04	: : 0.04	b : 0.04	4 : 0.04	

#score	234.50552514237495
#seq	24
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_transcript_m3_run2.txt

#BEAR
?FFFFFF~~~~FFFFFFC	chr20:62574240-62574494(-)$1	254	225	243	11.1432
EEEEE______FFFFFFY	chr7:73007599-73007824(-)$1	225	193	211	12.5639
BB}CCCCCCYYFFFFFFY	chr9:117014771-117015008(+)$1	237	194	212	11.7298
ZBBYYDDDDYYFFFFFFA	chr20:17610392-17610688(-)$1	296	214	232	12.0720
EEEE}BBEEEEE}GGGGG	chr17:19093390-19093627(-)$1	237	199	217	11.5610
ccc:CCC~~~~FFFFFF/	chr6:26055915-26056141(-)$1	226	189	207	9.2973
EEEE}BBEEEEE}GGGGG	chr17:19015764-19016034(-)$1	270	215	233	11.5610
::BB}BB}DDDDFFFFFF	chr17:19091307-19091512(+)$1	205	177	195	10.4101
EEEE}BBEEEEE}EEEEE	chr17:19091288-19091507(+)$1	219	170	188	12.0563
DDDDYYEEEEEFFFFFF:	chr9:116997816-116998031(+)$1	215	158	176	12.1048
DDDYYBB}AYYFFFFFF}	chr8:144940558-144940891(-)$1	333	310	328	14.5563
DDDD~~~~BB}FFFFFF}	chr9:116999867-117000095(+)$1	228	206	224	13.6628
EEEYYEEEEEYYEEEEEC	chr2:232325086-232325378(-)$1	292	169	187	11.3488
DDD}CCC}BB}FFFFFFY	chr20:26190064-26190313(-)$1	249	221	239	12.3947
DDDD}DDDD}A}EEEEE}	chr20:26189987-26190258(-)$1	271	246	264	10.4798
EEEEZZZCCC}FFFFFF}	chr9:117002396-117002646(+)$1	250	141	159	12.9883
EEEE}BBYYA}FFFFFF}	chr8:142139012-142139242(+)$1	230	158	176	14.5201

#otherMatches

#Seq PSSM
ACCAGCCGUCCAGCUUCC	chr20:62574240-62574494(-)$1	254	225	243	11.1432
GAGUGACCACAGCAGGGC	chr7:73007599-73007824(-)$1	225	193	211	12.5639
CAGCCUUGAGUGACAGCU	chr9:117014771-117015008(+)$1	237	194	212	11.7298
AUGGCCGGUAAGGGCGGC	chr20:17610392-17610688(-)$1	296	214	232	12.0720
ugcuuggcugcaacugcc	chr17:19093390-19093627(-)$1	237	199	217	11.5610
GAGCUGGAUAAUUUCUUU	chr6:26055915-26056141(-)$1	226	189	207	9.2973
ugcuuggcugcaacugcc	chr17:19015764-19016034(-)$1	270	215	233	11.5610
uugaugaucguucuucuc	chr17:19091307-19091512(+)$1	205	177	195	10.4101
ugcuuggcugcaacugcc	chr17:19091288-19091507(+)$1	219	170	188	12.0563
CCCUGCUGUUCCCCUGGU	chr9:116997816-116998031(+)$1	215	158	176	12.1048
CUGUCGGUGGAGGAGGCC	chr8:144940558-144940891(-)$1	333	310	328	14.5563
ggggaaagacuugcuuua	chr9:116999867-117000095(+)$1	228	206	224	13.6628
CCAAGAAACAGAAAGUGG	chr2:232325086-232325378(-)$1	292	169	187	11.3488
GAGCGGUGGUGUGUCGUU	chr20:26190064-26190313(-)$1	249	221	239	12.3947
GCUCGUCGGUGUGGGGUU	chr20:26189987-26190258(-)$1	271	246	264	10.4798
CCCAGAAGGCAUGAAGGU	chr9:117002396-117002646(+)$1	250	141	159	12.9883
AGCUGCGAACUUGGUCCG	chr8:142139012-142139242(+)$1	230	158	176	14.5201

#DB
.))))))....)))))))	chr20:62574240-62574494(-)$1	1	225	243	11.1432
)))))......)))))).	chr7:73007599-73007824(-)$1	1	193	211	12.5639
)).))))))..)))))).	chr9:117014771-117015008(+)$1	1	194	212	11.7298
.))..))))..)))))))	chr20:17610392-17610688(-)$1	1	214	232	12.0720
)))).))))))).)))))	chr17:19093390-19093627(-)$1	1	199	217	11.5610
))).)))....)))))).	chr6:26055915-26056141(-)$1	1	189	207	9.2973
)))).))))))).)))))	chr17:19015764-19016034(-)$1	1	215	233	11.5610
..)).)).))))))))))	chr17:19091307-19091512(+)$1	1	177	195	10.4101
)))).))))))).)))))	chr17:19091288-19091507(+)$1	1	170	188	12.0563
))))..))))))))))).	chr9:116997816-116998031(+)$1	1	158	176	12.1048
)))..)).)..)))))).	chr8:144940558-144940891(-)$1	1	310	328	14.5563
))))....)).)))))).	chr9:116999867-117000095(+)$1	1	206	224	13.6628
)))..)))))..))))))	chr2:232325086-232325378(-)$1	1	169	187	11.3488
))).))).)).)))))).	chr20:26190064-26190313(-)$1	1	221	239	12.3947
)))).)))).).))))).	chr20:26189987-26190258(-)$1	1	246	264	10.4798
))))...))).)))))).	chr9:117002396-117002646(+)$1	1	141	159	12.9883
)))).))..).)))))).	chr8:142139012-142139242(+)$1	1	158	176	14.5201

#PSSM
E : 0.41	D : 0.29	? : 0.05	B : 0.05	Z : 0.05	c : 0.05	: : 0.05	
E : 0.41	D : 0.29	B : 0.11	F : 0.05	c : 0.05	: : 0.05	
E : 0.41	D : 0.29	B : 0.11	F : 0.05	} : 0.05	c : 0.05	
E : 0.35	Y : 0.17	D : 0.17	F : 0.05	C : 0.05	: : 0.05	B : 0.05	} : 0.05	
} : 0.35	Y : 0.23	C : 0.17	F : 0.05	E : 0.05	~ : 0.05	Z : 0.05	
B : 0.35	C : 0.17	D : 0.11	F : 0.05	_ : 0.05	Y : 0.05	~ : 0.05	E : 0.05	Z : 0.05	
B : 0.35	C : 0.17	D : 0.11	E : 0.11	F : 0.05	_ : 0.05	~ : 0.05	Z : 0.05	
E : 0.29	~ : 0.17	} : 0.17	C : 0.11	D : 0.11	_ : 0.05	Y : 0.05	
E : 0.29	D : 0.17	~ : 0.11	C : 0.11	B : 0.11	_ : 0.05	A : 0.05	Y : 0.05	
E : 0.29	Y : 0.17	~ : 0.11	B : 0.11	_ : 0.05	D : 0.05	} : 0.05	C : 0.05	A : 0.05	
Y : 0.23	E : 0.23	} : 0.23	~ : 0.11	_ : 0.05	D : 0.05	A : 0.05	
F : 0.64	E : 0.17	D : 0.05	Y : 0.05	} : 0.05	
F : 0.70	} : 0.17	E : 0.11	
F : 0.70	E : 0.17	G : 0.11	
F : 0.70	E : 0.17	G : 0.11	
F : 0.70	E : 0.17	G : 0.11	
F : 0.70	E : 0.17	G : 0.11	
} : 0.29	Y : 0.17	C : 0.11	G : 0.11	A : 0.05	/ : 0.05	F : 0.05	E : 0.05	: : 0.05	

#score	204.4507919063823
#seq	17
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_CDS_m2_run1.txt

#BEAR
!cccqqqqqqqqccc]	chr1:116935420-116935692(+)$1	272	189	205	6.6783
ddddqqqqqqqqdddd	chr1:230839951-230840164(-)$1	213	78	94	8.1279
ddddpppppppdddd4	chr17:1675097-1675358(+)$1	261	232	248	11.6913
ddbbrrrrrrrrrbb]	chr2:216236535-216236781(-)$1	246	222	238	8.1372
[cccqqqqqqqqccc]	chr3:133475025-133475272(+)$1	247	23	39	6.6118
eeeepppppppeeeee	chr8:27457234-27457491(-)$1	257	233	249	10.5082
ddddqqqqqqqqdddd	chr6:132271466-132271694(-)$1	228	79	95	8.1279
eeeapppppppa]eee	chr17:27050600-27050807(+)$1	207	119	135	10.2021
ddrrrrrrrrrdddd]	chr2:216259198-216259416(-)$1	218	154	170	10.2067
cccrrrrrrrrrccc]	chr2:216248653-216248935(-)$1	282	66	82	9.1467
ddddpppppppdddd]	chr2:216271784-216272023(-)$1	239	190	206	11.8736
ddddqqqqqqqqdddd	chr2:216248061-216248305(-)$1	244	83	99	8.1279
ddddqqqqqqqqdddd	chr1:8926451-8926661(-)$1	210	153	169	8.1279
ddddpppppppdddd:	chr1:12020656-12020922(+)$1	266	183	199	10.9891
d[bbpppppppbbddd	chr3:186336224-186336432(+)$1	208	178	194	9.6642
eeeepppppppeeeee	chr3:186335001-186335234(+)$1	233	141	157	10.5082
eeeepppppppeeeee	chr3:186335034-186335239(+)$1	205	108	124	10.5082
ddddpppppppddddc	chr1:230845951-230846193(-)$1	242	29	45	11.6197
cccrrrrrrrrrccc]	chr2:216259216-216259450(-)$1	234	204	220	9.1467
ddddpppppppdddd]	chr19:6682128-6682336(-)$1	208	149	165	11.8736
#cccpppppppcccee	chr3:186336248-186336468(+)$1	220	195	211	9.9631
d[bbpppppppbb]dd	chr17:26697115-26697386(-)$1	271	25	41	9.2190
eeeepppppppeeeee	chr2:216261766-216262039(-)$1	273	49	65	10.5082
cccrrrrrrrrrccc]	chr4:74279205-74279419(+)$1	214	73	89	9.1467
eerrrrrrrrreeeee	chr2:216300278-216300524(-)$1	246	77	93	9.1033
ddddqqqqqqqqdddd	chrX:132887833-132888119(-)$1	286	78	94	8.1279
ddddqqqqqqqqdddd	chr1:230839973-230840183(-)$1	210	97	113	8.1279
ddddpppppppdddd:	chr12:57598344-57598575(+)$1	231	1	17	10.9891
ddddpppppppddddD	chr2:216272732-216272935(-)$1	203	167	183	10.9420
eerrrrrrrrreeeee	chr2:216300324-216300541(-)$1	217	94	110	9.1033
eeeepppppppeeeee	chr2:216251327-216251623(-)$1	296	19	35	10.5082
eeeepppppppeeeee	chr8:11704493-11704767(-)$1	274	203	219	10.5082
ddddpppppppddddD	chr1:980493-980760(+)$1	267	181	197	10.9420
ddddqqqqqqqqdddd	chr2:216262367-216262615(-)$1	248	90	106	8.1279
ddrrrrrrrrrdddd]	chr17:42429608-42429858(+)$1	250	69	85	10.2067
ggggrrrrrrrrrggg	chrX:132888084-132888297(-)$1	213	21	37	7.9341
!cccpppppppccc22	chr1:8931857-8932069(-)$1	212	133	149	9.4905
ddddpppppppdddd:	chr3:133476512-133476726(+)$1	214	127	143	10.9891
ddrrrrrrrrrdddd:	chr2:21228361-21228614(-)$1	253	111	127	9.3222
ddddqqqqqqqqdddd	chr10:73587755-73587992(-)$1	237	110	126	8.1279
eeeepppppppeeeee	chr2:216270921-216271162(-)$1	241	194	210	10.5082
ddrrrrrrrrrddddd	chr9:124065095-124065404(+)$1	309	207	223	10.0908

#otherMatches

#Seq PSSM
GGUCUGAAGAUCGAUG	chr1:116935420-116935692(+)$1	272	189	205	6.6783
CAGGACCAUCCACCUG	chr1:230839951-230840164(-)$1	213	78	94	8.1279
GAGAUCAGCAUUCUCC	chr17:1675097-1675358(+)$1	261	232	248	11.6913
CCCUCGAAUAAAAAGU	chr2:216236535-216236781(-)$1	246	222	238	8.1372
CAGUGUGAUCAGACUC	chr3:133475025-133475272(+)$1	247	23	39	6.6118
CCGAGCUGUGAUCGGG	chr8:27457234-27457491(-)$1	257	233	249	10.5082
UGCAAGUACCAGUGCA	chr6:132271466-132271694(-)$1	228	79	95	8.1279
UAGCGACCAAAGCCUG	chr17:27050600-27050807(+)$1	207	119	135	10.2021
CCAUCAUCCCAGGUAA	chr2:216259198-216259416(-)$1	218	154	170	10.2067
AGCAAGUCUACAGCUA	chr2:216248653-216248935(-)$1	282	66	82	9.1467
GACACUUCCUAUGUUA	chr2:216271784-216272023(-)$1	239	190	206	11.8736
CUGCUUUUAUUUGUAG	chr2:216248061-216248305(-)$1	244	83	99	8.1279
AGGAGUUCAUGAUCCU	chr1:8926451-8926661(-)$1	210	153	169	8.1279
CAGUACUCUCCACUGA	chr1:12020656-12020922(+)$1	266	183	199	10.9891
AAGUGUAACCUGCUGG	chr3:186336224-186336432(+)$1	208	178	194	9.6642
AAGACUGAGAUUCUUU	chr3:186335001-186335234(+)$1	233	141	157	10.5082
AAGACUGAGAUUCUUU	chr3:186335034-186335239(+)$1	205	108	124	10.5082
UCUCUCUAUCUGGGAG	chr1:230845951-230846193(-)$1	242	29	45	11.6197
UAGAAAAAUAAGCUGC	chr2:216259216-216259450(-)$1	234	204	220	9.1467
CUGGCUUUGCUCCAGA	chr19:6682128-6682336(-)$1	208	149	165	11.8736
UUGGGGUGUUACCACU	chr3:186336248-186336468(+)$1	220	195	211	9.9631
CAGCAGAAAAGGCAGU	chr17:26697115-26697386(-)$1	271	25	41	9.2190
AGCUUUGUGUCAGCUU	chr2:216261766-216262039(-)$1	273	49	65	10.5082
UAGCUGCUGAUUUUGU	chr4:74279205-74279419(+)$1	214	73	89	9.1467
UCGAAGAGCAAGAGGC	chr2:216300278-216300524(-)$1	246	77	93	9.1033
UCAAUGAAUUGUUUGA	chrX:132887833-132888119(-)$1	286	78	94	8.1279
CAGGACCAUCCACCUG	chr1:230839973-230840183(-)$1	210	97	113	8.1279
GUGGCCAGCAACCACC	chr12:57598344-57598575(+)$1	231	1	17	10.9891
GCAGAUUCUGACUGCG	chr2:216272732-216272935(-)$1	203	167	183	10.9420
UCGAAGAGCAAGAGGC	chr2:216300324-216300541(-)$1	217	94	110	9.1033
GCCACCAUCACUGGCU	chr2:216251327-216251623(-)$1	296	19	35	10.5082
UCAGGUGCGUGCUGAU	chr8:11704493-11704767(-)$1	274	203	219	10.5082
GCCCCGACCCCGGGCC	chr1:980493-980760(+)$1	267	181	197	10.9420
CUUCAGACUCAGGAAG	chr2:216262367-216262615(-)$1	248	90	106	8.1279
UAAUGCCAUUCUGUGC	chr17:42429608-42429858(+)$1	250	69	85	10.2067
UUCAUUUUCACACUGG	chrX:132888084-132888297(-)$1	213	21	37	7.9341
CCCACAGCCCAUGGCC	chr1:8931857-8932069(-)$1	212	133	149	9.4905
GAAUUCCAACUAUUCA	chr3:133476512-133476726(+)$1	214	127	143	10.9891
UGCCUACGUUCCAUGU	chr2:21228361-21228614(-)$1	253	111	127	9.3222
GAUGGUGACUGACAUC	chr10:73587755-73587992(-)$1	237	110	126	8.1279
GACAACCAGUAUGUCU	chr2:216270921-216271162(-)$1	241	194	210	10.5082
CCACCUUCCUAGGCUA	chr9:124065095-124065404(+)$1	309	207	223	10.0908

#DB
.(((........))).	chr1:116935420-116935692(+)$1	1	189	205	6.6783
((((........))))	chr1:230839951-230840164(-)$1	1	78	94	8.1279
((((.......)))).	chr17:1675097-1675358(+)$1	1	232	248	11.6913
((((.........)).	chr2:216236535-216236781(-)$1	1	222	238	8.1372
.(((........))).	chr3:133475025-133475272(+)$1	1	23	39	6.6118
((((.......)))))	chr8:27457234-27457491(-)$1	1	233	249	10.5082
((((........))))	chr6:132271466-132271694(-)$1	1	79	95	8.1279
((((.......).)))	chr17:27050600-27050807(+)$1	1	119	135	10.2021
((.........)))).	chr2:216259198-216259416(-)$1	1	154	170	10.2067
(((.........))).	chr2:216248653-216248935(-)$1	1	66	82	9.1467
((((.......)))).	chr2:216271784-216272023(-)$1	1	190	206	11.8736
((((........))))	chr2:216248061-216248305(-)$1	1	83	99	8.1279
((((........))))	chr1:8926451-8926661(-)$1	1	153	169	8.1279
((((.......)))).	chr1:12020656-12020922(+)$1	1	183	199	10.9891
(.((.......)))))	chr3:186336224-186336432(+)$1	1	178	194	9.6642
((((.......)))))	chr3:186335001-186335234(+)$1	1	141	157	10.5082
((((.......)))))	chr3:186335034-186335239(+)$1	1	108	124	10.5082
((((.......)))))	chr1:230845951-230846193(-)$1	1	29	45	11.6197
(((.........))).	chr2:216259216-216259450(-)$1	1	204	220	9.1467
((((.......)))).	chr19:6682128-6682336(-)$1	1	149	165	11.8736
.(((.......)))))	chr3:186336248-186336468(+)$1	1	195	211	9.9631
(.((.......)).))	chr17:26697115-26697386(-)$1	1	25	41	9.2190
((((.......)))))	chr2:216261766-216262039(-)$1	1	49	65	10.5082
(((.........))).	chr4:74279205-74279419(+)$1	1	73	89	9.1467
((.........)))))	chr2:216300278-216300524(-)$1	1	77	93	9.1033
((((........))))	chrX:132887833-132888119(-)$1	1	78	94	8.1279
((((........))))	chr1:230839973-230840183(-)$1	1	97	113	8.1279
((((.......)))).	chr12:57598344-57598575(+)$1	1	1	17	10.9891
((((.......)))))	chr2:216272732-216272935(-)$1	1	167	183	10.9420
((.........)))))	chr2:216300324-216300541(-)$1	1	94	110	9.1033
((((.......)))))	chr2:216251327-216251623(-)$1	1	19	35	10.5082
((((.......)))))	chr8:11704493-11704767(-)$1	1	203	219	10.5082
((((.......)))))	chr1:980493-980760(+)$1	1	181	197	10.9420
((((........))))	chr2:216262367-216262615(-)$1	1	90	106	8.1279
((.........)))).	chr17:42429608-42429858(+)$1	1	69	85	10.2067
((((.........)))	chrX:132888084-132888297(-)$1	1	21	37	7.9341
.(((.......)))..	chr1:8931857-8932069(-)$1	1	133	149	9.4905
((((.......)))).	chr3:133476512-133476726(+)$1	1	127	143	10.9891
((.........)))).	chr2:21228361-21228614(-)$1	1	111	127	9.3222
((((........))))	chr10:73587755-73587992(-)$1	1	110	126	8.1279
((((.......)))))	chr2:216270921-216271162(-)$1	1	194	210	10.5082
((.........)))))	chr9:124065095-124065404(+)$1	1	207	223	10.0908

#PSSM
d : 0.57	e : 0.23	c : 0.07	! : 0.04	[ : 0.02	# : 0.02	g : 0.02	
d : 0.52	e : 0.23	c : 0.16	[ : 0.04	g : 0.02	
d : 0.40	e : 0.19	c : 0.16	r : 0.14	b : 0.07	g : 0.02	
d : 0.40	r : 0.21	e : 0.16	c : 0.09	b : 0.07	a : 0.02	g : 0.02	
p : 0.50	r : 0.26	q : 0.23	
p : 0.50	r : 0.26	q : 0.23	
p : 0.50	r : 0.26	q : 0.23	
p : 0.50	r : 0.26	q : 0.23	
p : 0.50	r : 0.26	q : 0.23	
p : 0.50	r : 0.26	q : 0.23	
p : 0.50	r : 0.26	q : 0.23	
d : 0.30	q : 0.23	e : 0.21	r : 0.11	b : 0.04	c : 0.04	a : 0.02	
d : 0.50	e : 0.21	c : 0.16	r : 0.04	b : 0.04	] : 0.02	
d : 0.52	e : 0.23	c : 0.16	b : 0.02	] : 0.02	g : 0.02	
d : 0.54	e : 0.26	c : 0.11	b : 0.02	g : 0.02	2 : 0.02	
d : 0.26	e : 0.26	] : 0.23	: : 0.09	D : 0.04	4 : 0.02	c : 0.02	g : 0.02	2 : 0.02	

#score	403.86543407819767
#seq	42
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_UTR_m1_run2.txt

#BEAR
ffffa!!ffffff!!cccnnnnncccffffff22a]ff	chr16:30965610-30965851(+)$1	241	124	162	14.4167
%iiiiiiiii[dddd!!annnnna22dddd]iiiiiii	chr15:70340706-70340966(-)$1	260	196	234	15.0781
[a!!bbggggggg!!cccnnnnncccggggggg]bb44	chr11:66044055-66044296(+)$1	241	49	87	16.5614
:================qqqqqqqq=============	chr22:24811305-24811543(+)$1	238	21	59	11.5530
ffdddd!!dddd"""bbannnnna]bb333dddd]ddd	chr9:127243749-127244039(-)$1	290	111	149	13.8085
iiiiiiiii[bb[a[cccnnnnnccca]bb]iiiiiii	chr16:57418248-57418480(+)$1	232	46	84	18.2016
ffffff"""cccffffffnnnnnffffff]ccc]ffff	chr22:43014997-43015293(-)$1	296	209	247	13.3836
============[cccqqqqqqqqccc]==========	chr11:868564-868876(-)$1	312	189	227	12.8601
ggggggg[ccc####ddddllldddd22ccc]gggggg	chr19:15348949-15349226(-)$1	277	143	181	12.6552
hhh[ffffffdddd[cccnnnnncccdddd]ffffff]	chr19:3534892-3535151(+)$1	259	18	56	13.5408
=============!!ddddmmmmdddd]==========	chr22:19024913-19025138(-)$1	225	132	170	14.6210
"""ffffffffffffcccnnnnnccc4444ffffff44	chr17:80401391-80401642(-)$1	251	38	76	14.5412
[a[eeeee!!ccc!!cccnnnnnccc22ccc]eeeee]	chrX:152916574-152916795(+)$1	221	119	157	16.8780
dddd==========[cccrrrrrrrrrccc]=======	chr16:3072130-3072403(+)$1	273	163	201	13.5836
Gggggggg"""dddd[a[annnnna]a]ddddgggggg	chr11:71145486-71145804(-)$1	318	51	89	14.1213
eeeee!!ccc!!bb!!bbnnnnnbbbb22ccceeeee3	chr11:838300-838624(+)$1	324	267	305	14.3044
a[bb[ccc!!dddd[cccooooooccc]ddddccc]bb	chr20:3630187-3630460(+)$1	273	71	109	12.5883
"dddd[a[a[ccc"""bbnnnnnbb333cccaa]dddd	chr1:2521225-2521497(+)$1	272	194	232	15.5744
"dddd[a[a[ccc"""bbnnnnnbb333cccaa]dddd	chr1:2521344-2521588(+)$1	244	75	113	15.5744
ffffff####bb[eeeeennnnneeeeebb]ffffff]	chr21:45746916-45747211(+)$1	295	171	209	12.7865
geeeee[acccccc[cccoooooocccccc]ccc4444	chr1:12035204-12035470(+)$1	266	150	188	14.1655
iiiiiiiii[bb[a[cccnnnnnccca]bb]iiiiiii	chr16:57418280-57418510(+)$1	230	14	52	18.2016
eee####eeeeeccc[bbnnnnnbb]ccc22eeeeeee	chr12:54744567-54744827(+)$1	260	46	84	12.9900
[ffffffdddd"""ddddnnnnndddd22dddd333ff	chr11:61634005-61634218(+)$1	213	146	184	13.6930
ee"""bb####gggggggnnnnnggggggg4444bb33	chr9:33112204-33112440(-)$1	236	57	95	15.4190
!!eeeee####ccc[cccooooooccc]ccc333eeee	chr2:20401940-20402227(-)$1	287	191	229	15.0488
ggggggg####gggggggnnnnnggggggggggggggd	chr19:19467318-19467689(+)$1	371	148	186	16.1678
Gggggggg"""dddd[a[annnnna]a]ddddgggggg	chr11:71145662-71145968(-)$1	306	215	253	14.1213
gga!!ggggggg!!bb[annnnna]bb]ggggggg22a	chr17:1657883-1658116(+)$1	233	8	46	15.4715
==[a[ccc"""a[ccc[ammmma]ccc]a333ccca==	chr17:80006090-80006363(-)$1	273	190	228	14.0015
e"""eeeee!!gggggggnnnnnggggggg22eeeee]	chr16:31501541-31501787(-)$1	246	164	202	14.7208
b[============[cccnnnnnccc============	chr22:36677875-36678190(-)$1	315	57	95	19.6354
!eeeee!!a!!ccc[cccnnnnnccc]ccc333a22ee	chr20:3628995-3629241(+)$1	246	145	183	17.2278
ccc####cccdddd[cccnnnnnccc333dddd22ccc	chrX:130418412-130418687(-)$1	275	136	174	15.7155
c=============[cccmmmmccc]============	chr16:8948260-8948599(-)$1	339	163	201	15.2618
=============[bb[annnnna]bb]==========	chr11:74916292-74916529(+)$1	237	91	129	18.1444
fff!!dddd####cccbbnnnnnbb]ccc22dddd22f	chr3:185208551-185208850(-)$1	299	237	275	13.5096
iiiiiiii$$$$$ddddoooooodddd4444iiiiiii	chr11:62392508-62392758(-)$1	250	16	54	13.4937
$$dddd[a[ccc[a[cccooooooccc]accc]adddd	chr11:71714290-71714549(-)$1	259	93	131	13.5107
:dddd!!===========rrrrrrrrr===========	chr16:2579717-2579968(+)$1	251	1	39	12.3367
###ccc!!bb[cccddddnnnnndddd22ccc]bb]cc	chr1:24121510-24121772(+)$1	262	135	173	14.7201
==============!!cccmmmmccc============	chr11:75283619-75283869(+)$1	250	91	129	15.5834
ddd!!bbbb!!gggggggnnnnnggggggg22bb]bb2	chr19:4360895-4361151(-)$1	256	48	86	13.2184
===========####a[bbmmmmbba22==========	chr16:27472497-27472772(-)$1	275	163	201	14.1565
fffffdddd[a[a[ddddnnnnndddd]a]a]ddddee	chr7:47316850-47317096(-)$1	246	104	142	13.6388
ccc"""ggggggg!!cccnnnnnccc22ggggggg]cc	chr14:77941178-77941427(-)$1	249	198	236	17.4416
####bb[ccc!!ffffffnnnnnffffffccc]bb444	chr16:46964523-46964771(+)$1	248	62	100	13.7945
:eeeee!!bb!!a!!cccnnnnnccc22a22bb22eee	chr17:38077891-38078133(-)$1	242	9	47	14.9384
ffffffccc[bb!!ddddnnnnndddd22bb22ccc]f	chr20:39803961-39804225(+)$1	264	112	150	13.6465
b!!ccc!!bb[ccc[cccnnnnnccc]ccc]bb4444c	chr20:48568828-48569160(+)$1	332	51	89	16.3962
3dddd:==========[ccclllccc333=========	chr17:48187649-48187926(+)$1	277	84	122	13.9069
==####ccc[bb!!ddddoooooodddd22bbccc444	chr19:4038174-4038430(+)$1	256	68	106	12.1778

#otherMatches

#Seq PSSM
cgcuguucccaggcuggucucaaacuccugggcucaag	chr16:30965610-30965851(+)$1	241	124	162	14.4167
CGGGCAUGGGAUGUGGAGGCUGGCGACACACCCUGUGC	chr15:70340706-70340966(-)$1	260	196	234	15.0781
UCUACUGCCCUGGCUGCAGUCAGUGCCCAGGGCGAGGA	chr11:66044055-66044296(+)$1	241	49	87	16.5614
GGAAGGGGUUUGGAGUCCCAGCUCUGGCUUUAGAUUUC	chr22:24811305-24811543(+)$1	238	21	59	11.5530
AUAGCGCUGUUGAUCCCCUCUCUGUGGCUCCAACCCGU	chr9:127243749-127244039(-)$1	290	111	149	13.8085
AAAGGGGAAGUUGUAGGCAUAAAGUCAGGGGUUCCCUU	chr16:57418248-57418480(+)$1	232	46	84	18.2016
UCAGGGUUUUGGGGUCCUGGGCUGGGGCCACCAUCCCU	chr22:43014997-43015293(-)$1	296	209	247	13.3836
GGGGUCUCCUCCACAGGACGGGAGCUGGGGAGGGGGUC	chr11:868564-868876(-)$1	312	189	227	12.8601
GGGCCUGGCCCUCCUGCAUGCUAUGCCCGGGGCAGGCC	chr19:15348949-15349226(-)$1	277	143	181	12.6552
CCUUCCCAGCGCUUGUCCCCCGAGGAAGGCGGCUGGGC	chr19:3534892-3535151(+)$1	259	18	56	13.5408
GUGCUGUCUCGCUCAGUCUUUCCAGACCAGCGGGGCAG	chr22:19024913-19025138(-)$1	225	132	170	14.6210
AUUGCCUGCUCAUGCUGCUGCUUGCACACUGCAUGAAA	chr17:80401391-80401642(-)$1	251	38	76	14.5412
GAUCUAUGCUUGUUUGUUUUUGUAAUCCAUAUCAUAGU	chrX:152916574-152916795(+)$1	221	119	157	16.8780
CCAACUCCCCAAAGCGGGGAGGAGAUAUUUAUUUUGGG	chr16:3072130-3072403(+)$1	273	163	201	13.5836
AGGUGGGCUCUgcuucccgauucccugugagcgcccac	chr11:71145486-71145804(-)$1	318	51	89	14.1213
CCCAGUUGGGGAAGCCAGGUGAGCUCUGACCCUUGGGC	chr11:838300-838624(+)$1	324	267	305	14.3044
GACUCAGGAAGCAGAGGCGUCCCUGCCGCUGCCCUUGG	chr20:3630187-3630460(+)$1	273	71	109	12.5883
UUACUGAUGUCAGAAUCAUUGUUUGCACCUGCUGGGUA	chr1:2521225-2521497(+)$1	272	194	232	15.5744
UUACUGAUGUCAGAAUCAUUGUUUGCACCUGCUGGGUA	chr1:2521344-2521588(+)$1	244	75	113	15.5744
GCCAGCCCUUGCUCUACCUGGCCGGUAGGCUGCUGGCG	chr21:45746916-45747211(+)$1	295	171	209	12.7865
GGGACUUCUGCCUCCAUGGCUGGUCAUGAGAGCAAACC	chr1:12035204-12035470(+)$1	266	150	188	14.1655
AAAGGGGAAGUUGUAGGCAUAAAGUCAGGGGUUCCCUU	chr16:57418280-57418510(+)$1	230	14	52	18.2016
CUGUGCCCUUUGCUGUAGCUACACUUCAGAUUAAAGUA	chr12:54744567-54744827(+)$1	260	46	84	12.9900
CUCGUCCCAGCCCUCCCCAUCUCGGGGCUGCUGUGUGG	chr11:61634005-61634218(+)$1	213	146	184	13.6930
AGACAGAAGCCUCUGCACCUACUGUGCAGAACUCUCCA	chr9:33112204-33112440(-)$1	236	57	95	15.4190
AUCUAGAUAUCGACUUGUUUUUGCACAUGUUUCCUCUA	chr2:20401940-20402227(-)$1	287	191	229	15.0488
AGAUCUGGAGCCCAGGGACUUUCUUCCUGGCAGAUCUG	chr19:19467318-19467689(+)$1	371	148	186	16.1678
AGGUGGGCUCUgcuucccgauucccugugagcgcccac	chr11:71145662-71145968(-)$1	306	215	253	14.1213
UCCAACCGGCUUUGUGGCACUGGGGCAGGGGCCGGGGG	chr17:1657883-1658116(+)$1	233	8	46	15.4715
uggcaggcuuugugggggacgccgcccucucugccgca	chr17:80006090-80006363(-)$1	273	190	228	14.0015
GAAAUUGAGGCCCUGCAGUUAGUUUGCGGGAACUCAGC	chr16:31501541-31501787(-)$1	246	164	202	14.7208
GCUGGGGUGGGGGGAGGAGUGGAUUCCUCCCCACCCUG	chr22:36677875-36678190(-)$1	315	57	95	19.6354
GAGUUUGUGAAUUUGGAGAGAUACUCAAAAGAGCUAAA	chr20:3628995-3629241(+)$1	246	145	183	17.2278
CCAGCCCGAACUCCCCCACCCCAUGGCCUGGAGGUUUC	chrX:130418412-130418687(-)$1	275	136	174	15.7155
GAUGUUGCCUUUUGGUGCCUUUGCAGUGGGAGGCGGCA	chr16:8948260-8948599(-)$1	339	163	201	15.2618
UGCCUUAGGGCCCUGGGUGGGCAAGUCUGGGCCCUGGG	chr11:74916292-74916529(+)$1	237	91	129	18.1444
UGUUGCAUCUUUGUGGAUGUUUAGUACCAAUGAUGACA	chr3:185208551-185208850(-)$1	299	237	275	13.5096
GAGUGAGGUUGCUAAAGAACAUCCUUUUCCCUCUCAUU	chr11:62392508-62392758(-)$1	250	16	54	13.4937
CCCUAGAGACAGUGAUGCCUGCCCGCACCCUGGCCUGG	chr11:71714290-71714549(-)$1	259	93	131	13.5107
UGCACCCAGCAGGACUCGCCUUGGCUCCGGGUUUUGCU	chr16:2579717-2579968(+)$1	251	1	39	12.3367
CCUGCCUCCACUCAGCUGCUUCUCAGUCAUGAAUGUGG	chr1:24121510-24121772(+)$1	262	135	173	14.7201
UUCUUCCUUUUUUAGUUCUUCAAAGAUAGGGAGGGAAG	chr11:75283619-75283869(+)$1	250	91	129	15.5834
GUGAUGGGCCCUGGCCCUACUCCAGGGCCAAUGCACCC	chr19:4360895-4361151(-)$1	256	48	86	13.2184
UCGGCAGACCCCACUGUGCCCUGGCCUUGGGUCUGCCG	chr16:27472497-27472772(-)$1	275	163	201	14.1565
uggugagcugggcgagcugggcgagcugggcgagcugg	chr7:47316850-47317096(-)$1	246	104	142	13.6388
CCCUCUGUUCUGCUGAUUGUAGGGAUGUGCAGGGCUGG	chr14:77941178-77941427(-)$1	249	198	236	17.4416
AUCGUAGAAGCUAGUAUAUUUUUUAUAUUUUUGUAACA	chr16:46964523-46964771(+)$1	248	62	100	13.7945
GAGGUUGGGGAGCUGUAGGAGAGCUAGUGAGUCGAGAC	chr17:38077891-38078133(-)$1	242	9	47	14.9384
GGGUGGGGUACAGGCAGUUAGGUGCUGAAUGAAGCUGC	chr20:39803961-39804225(+)$1	264	112	150	13.6465
CCCUACUGUUAACCUUGUUUGUCACACGGUCGAGUUCG	chr20:48568828-48569160(+)$1	332	51	89	16.3962
UUCCCAUGGCAGUCCUCCUCUCUGAGACCAGGGCUGUC	chr17:48187649-48187926(+)$1	277	84	122	13.9069
CCUCUGCCCACGACCAUUCCAGCCAGUGCGCGGGGACC	chr19:4038174-4038430(+)$1	256	68	106	12.1778

#DB
(((((..((((((..(((.....)))))))))..).))	chr16:30965610-30965851(+)$1	1	124	162	14.4167
.(((((((((.((((..(.....)..)))).)))))))	chr15:70340706-70340966(-)$1	1	196	234	15.0781
.(..(((((((((..(((.....)))))))))).))..	chr11:66044055-66044296(+)$1	1	49	87	16.5614
.((((((((((((((((........)))))))))))))	chr22:24811305-24811543(+)$1	1	21	59	11.5530
((((((..((((...(((.....).))...)))).)))	chr9:127243749-127244039(-)$1	1	111	149	13.8085
(((((((((.((.(.(((.....)))).)).)))))))	chr16:57418248-57418480(+)$1	1	46	84	18.2016
((((((...(((((((((.....)))))).))).))))	chr22:43014997-43015293(-)$1	1	209	247	13.3836
((((((((((((.(((........))).))))))))))	chr11:868564-868876(-)$1	1	189	227	12.8601
(((((((.(((....((((...))))..))).))))))	chr19:15348949-15349226(-)$1	1	143	181	12.6552
(((.((((((((((.(((.....))))))).)))))).	chr19:3534892-3535151(+)$1	1	18	56	13.5408
(((((((((((((..((((....)))).))))))))))	chr22:19024913-19025138(-)$1	1	132	170	14.6210
...(((((((((((((((.....)))....))))))..	chr17:80401391-80401642(-)$1	1	38	76	14.5412
.(.(((((..(((..(((.....)))..))).))))).	chrX:152916574-152916795(+)$1	1	119	157	16.8780
((((((((((((((.(((.........))).)))))))	chr16:3072130-3072403(+)$1	1	163	201	13.5836
((((((((...((((.(.(.....).).))))))))))	chr11:71145486-71145804(-)$1	1	51	89	14.1213
(((((..(((..((..((.....))))..)))))))).	chr11:838300-838624(+)$1	1	267	305	14.3044
(.((.(((..((((.(((......))).))))))).))	chr20:3630187-3630460(+)$1	1	71	109	12.5883
.((((.(.(.(((...((.....))...))))).))))	chr1:2521225-2521497(+)$1	1	194	232	15.5744
.((((.(.(.(((...((.....))...))))).))))	chr1:2521344-2521588(+)$1	1	75	113	15.5744
((((((....((.(((((.....))))))).)))))).	chr21:45746916-45747211(+)$1	1	171	209	12.7865
)(((((.(((((((.(((......)))))).)))....	chr1:12035204-12035470(+)$1	1	150	188	14.1655
(((((((((.((.(.(((.....)))).)).)))))))	chr16:57418280-57418510(+)$1	1	14	52	18.2016
(((....((((((((.((.....)).)))..)))))))	chr12:54744567-54744827(+)$1	1	46	84	12.9900
.((((((((((...((((.....))))..))))...))	chr11:61634005-61634218(+)$1	1	146	184	13.6930
((...((....(((((((.....)))))))....))..	chr9:33112204-33112440(-)$1	1	57	95	15.4190
..(((((....(((.(((......))).)))...))))	chr2:20401940-20402227(-)$1	1	191	229	15.0488
(((((((....(((((((.....)))))))))))))))	chr19:19467318-19467689(+)$1	1	148	186	16.1678
((((((((...((((.(.(.....).).))))))))))	chr11:71145662-71145968(-)$1	1	215	253	14.1213
(((..(((((((..((.(.....).)).)))))))..)	chr17:1657883-1658116(+)$1	1	8	46	15.4715
((.(.(((...(.(((.(....).))).)...))))))	chr17:80006090-80006363(-)$1	1	190	228	14.0015
(...(((((..(((((((.....)))))))..))))).	chr16:31501541-31501787(-)$1	1	164	202	14.7208
(.((((((((((((.(((.....)))))))))))))))	chr22:36677875-36678190(-)$1	1	57	95	19.6354
.(((((..(..(((.(((.....))).)))...)..))	chr20:3628995-3629241(+)$1	1	145	183	17.2278
(((....(((((((.(((.....)))...))))..)))	chrX:130418412-130418687(-)$1	1	136	174	15.7155
((((((((((((((.(((....))).))))))))))))	chr16:8948260-8948599(-)$1	1	163	201	15.2618
(((((((((((((.((.(.....).)).))))))))))	chr11:74916292-74916529(+)$1	1	91	129	18.1444
(((..((((....(((((.....)).)))..))))..)	chr3:185208551-185208850(-)$1	1	237	275	13.5096
((((((((.....((((......))))....)))))))	chr11:62392508-62392758(-)$1	1	16	54	13.4937
..((((.(.(((.(.(((......))).)))).)))))	chr11:71714290-71714549(-)$1	1	93	131	13.5107
.((((..(((((((((((.........)))))))))))	chr16:2579717-2579968(+)$1	1	1	39	12.3367
...(((..((.(((((((.....))))..))).)).))	chr1:24121510-24121772(+)$1	1	135	173	14.7201
((((((((((((((..(((....)))))))))))))))	chr11:75283619-75283869(+)$1	1	91	129	15.5834
(((..((((..(((((((.....)))))))..)).)).	chr19:4360895-4361151(-)$1	1	48	86	13.2184
(((((((((((....(.((....)))..))))))))))	chr16:27472497-27472772(-)$1	1	163	201	14.1565
)))))((((.(.(.((((.....)))).).).))))((	chr7:47316850-47317096(-)$1	1	104	142	13.6388
(((...(((((((..(((.....)))..))))))).))	chr14:77941178-77941427(-)$1	1	198	236	17.4416
....((.(((..((((((.....))))))))).))...	chr16:46964523-46964771(+)$1	1	62	100	13.7945
.(((((..((..(..(((.....)))..)..))..)))	chr17:38077891-38078133(-)$1	1	9	47	14.9384
(((((((((.((..((((.....))))..))..))).)	chr20:39803961-39804225(+)$1	1	112	150	13.6465
(..(((..((.(((.(((.....))).))).))....)	chr20:48568828-48569160(+)$1	1	51	89	16.3962
.)))).((((((((((.(((...)))...)))))))))	chr17:48187649-48187926(+)$1	1	84	122	13.9069
((....(((.((..((((......))))..)))))...	chr19:4038174-4038430(+)$1	1	68	106	12.1778

#PSSM
f : 0.13	= : 0.13	g : 0.07	e : 0.07	[ : 0.05	: : 0.05	i : 0.05	" : 0.05	c : 0.05	d : 0.03	G : 0.03	! : 0.03	b : 0.03	# : 0.03	% : 0.01	h : 0.01	a : 0.01	$ : 0.01	3 : 0.01	
= : 0.17	f : 0.15	d : 0.11	e : 0.11	g : 0.09	i : 0.07	a : 0.03	" : 0.03	[ : 0.03	! : 0.03	c : 0.03	# : 0.03	h : 0.01	$ : 0.01	
= : 0.15	d : 0.15	f : 0.13	e : 0.11	i : 0.07	g : 0.07	" : 0.05	# : 0.05	! : 0.03	[ : 0.03	c : 0.03	h : 0.01	b : 0.01	a : 0.01	
= : 0.15	f : 0.13	d : 0.13	e : 0.11	i : 0.07	! : 0.07	g : 0.07	# : 0.07	" : 0.05	c : 0.03	[ : 0.01	b : 0.01	a : 0.01	
= : 0.17	f : 0.13	e : 0.13	d : 0.11	i : 0.07	g : 0.07	# : 0.05	! : 0.05	b : 0.03	[ : 0.03	" : 0.03	c : 0.03	a : 0.01	
= : 0.17	f : 0.11	e : 0.11	g : 0.09	i : 0.07	b : 0.07	d : 0.07	c : 0.07	! : 0.05	# : 0.05	[ : 0.03	" : 0.01	: : 0.01	
= : 0.19	! : 0.15	g : 0.13	i : 0.07	c : 0.07	f : 0.05	e : 0.05	# : 0.05	[ : 0.05	a : 0.03	b : 0.03	d : 0.03	" : 0.01	
= : 0.21	c : 0.13	g : 0.09	! : 0.09	i : 0.07	# : 0.07	f : 0.05	[ : 0.05	e : 0.05	d : 0.05	a : 0.03	" : 0.01	b : 0.01	
= : 0.21	c : 0.13	d : 0.07	" : 0.07	# : 0.07	b : 0.07	f : 0.05	i : 0.05	g : 0.05	a : 0.05	! : 0.03	e : 0.03	$ : 0.01	[ : 0.01	
= : 0.21	[ : 0.13	c : 0.13	! : 0.09	# : 0.09	f : 0.05	g : 0.05	" : 0.05	b : 0.05	d : 0.03	i : 0.01	e : 0.01	$ : 0.01	
= : 0.21	c : 0.13	! : 0.11	d : 0.09	b : 0.09	# : 0.07	[ : 0.05	g : 0.05	" : 0.05	f : 0.03	e : 0.01	$ : 0.01	a : 0.01	
= : 0.19	c : 0.19	d : 0.13	g : 0.13	b : 0.09	# : 0.05	! : 0.05	f : 0.03	e : 0.01	" : 0.01	a : 0.01	$ : 0.01	[ : 0.01	
= : 0.17	c : 0.17	d : 0.11	g : 0.11	[ : 0.11	f : 0.07	# : 0.05	! : 0.05	" : 0.03	a : 0.03	b : 0.01	$ : 0.01	
! : 0.17	c : 0.17	d : 0.13	= : 0.13	" : 0.07	g : 0.07	a : 0.05	f : 0.05	# : 0.03	[ : 0.03	b : 0.01	e : 0.01	
[ : 0.24	d : 0.17	! : 0.15	c : 0.07	g : 0.07	= : 0.05	" : 0.05	f : 0.05	# : 0.03	b : 0.03	e : 0.01	
c : 0.42	d : 0.15	g : 0.07	! : 0.05	= : 0.05	b : 0.05	[ : 0.05	f : 0.03	" : 0.03	e : 0.01	a : 0.01	
c : 0.38	d : 0.15	b : 0.11	[ : 0.09	g : 0.07	= : 0.03	f : 0.03	a : 0.03	! : 0.01	q : 0.01	e : 0.01	
c : 0.40	d : 0.13	b : 0.11	a : 0.09	g : 0.07	q : 0.03	f : 0.03	[ : 0.03	e : 0.01	o : 0.01	= : 0.01	
n : 0.63	o : 0.11	q : 0.03	d : 0.03	r : 0.03	a : 0.03	m : 0.03	c : 0.03	b : 0.01	
n : 0.67	o : 0.11	m : 0.09	q : 0.03	r : 0.03	l : 0.01	c : 0.01	
n : 0.67	o : 0.11	m : 0.09	q : 0.03	l : 0.03	r : 0.03	
n : 0.67	o : 0.11	m : 0.09	q : 0.03	l : 0.03	r : 0.03	
n : 0.67	o : 0.11	m : 0.05	q : 0.03	r : 0.03	d : 0.01	a : 0.01	c : 0.01	l : 0.01	
c : 0.30	d : 0.13	b : 0.11	o : 0.09	a : 0.07	g : 0.07	q : 0.03	f : 0.03	r : 0.03	n : 0.03	e : 0.01	] : 0.01	
c : 0.42	d : 0.15	b : 0.11	g : 0.07	] : 0.05	f : 0.03	r : 0.03	a : 0.03	2 : 0.01	q : 0.01	e : 0.01	
c : 0.40	d : 0.15	] : 0.09	b : 0.07	g : 0.07	f : 0.03	r : 0.03	3 : 0.03	2 : 0.01	= : 0.01	e : 0.01	a : 0.01	
d : 0.17	c : 0.15	g : 0.09	2 : 0.09	= : 0.07	b : 0.07	a : 0.07	3 : 0.07	f : 0.05	r : 0.03	] : 0.03	4 : 0.01	e : 0.01	
] : 0.24	2 : 0.17	c : 0.11	g : 0.09	= : 0.09	3 : 0.09	f : 0.05	d : 0.05	4 : 0.03	e : 0.01	
c : 0.21	= : 0.17	g : 0.13	d : 0.09	2 : 0.09	a : 0.07	f : 0.05	3 : 0.05	b : 0.05	4 : 0.03	
c : 0.24	= : 0.19	d : 0.13	g : 0.13	b : 0.07	2 : 0.07	3 : 0.03	] : 0.03	4 : 0.03	f : 0.01	
= : 0.19	c : 0.19	] : 0.15	d : 0.11	2 : 0.09	g : 0.07	f : 0.03	4 : 0.03	3 : 0.03	b : 0.03	a : 0.01	
= : 0.21	d : 0.13	c : 0.11	f : 0.07	i : 0.07	g : 0.07	] : 0.05	3 : 0.05	2 : 0.05	b : 0.05	a : 0.03	e : 0.01	4 : 0.01	
= : 0.21	g : 0.13	d : 0.09	c : 0.09	i : 0.07	e : 0.07	f : 0.05	] : 0.05	b : 0.05	2 : 0.03	a : 0.03	3 : 0.03	4 : 0.01	
= : 0.21	g : 0.11	c : 0.09	i : 0.07	] : 0.07	e : 0.07	2 : 0.05	d : 0.05	f : 0.05	b : 0.05	3 : 0.03	4 : 0.03	a : 0.03	
= : 0.21	g : 0.11	e : 0.09	d : 0.09	i : 0.07	b : 0.07	f : 0.07	c : 0.07	2 : 0.05	] : 0.03	4 : 0.03	a : 0.01	3 : 0.01	
= : 0.21	e : 0.11	d : 0.09	] : 0.07	i : 0.07	f : 0.07	g : 0.07	4 : 0.07	b : 0.05	2 : 0.05	c : 0.03	3 : 0.01	a : 0.01	
= : 0.23	e : 0.15	4 : 0.11	f : 0.09	i : 0.07	d : 0.07	g : 0.07	c : 0.05	b : 0.03	2 : 0.03	3 : 0.01	] : 0.01	
= : 0.23	f : 0.09	4 : 0.09	d : 0.09	e : 0.09	i : 0.07	] : 0.07	c : 0.07	g : 0.05	3 : 0.03	b : 0.01	a : 0.01	2 : 0.01	

#score	763.0901655170928
#seq	52
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_UTR_m2_run2.txt

#BEAR
eeeeettttttttttteeee	chr16:89346985-89347212(-)$1	227	128	148	19.9089
ccwwwwwwwwwwwwwwccc]	chr4:1229196-1229413(-)$1	217	183	203	16.8667
[a!!cccrrrrrrrrrccc]	chr1:144932076-144932361(-)$1	285	230	250	10.1622
eeeeettttttttttteeee	chr10:71075446-71075713(+)$1	267	13	33	19.9089
eeeeerrrrrrrrreeeeec	chr20:25843563-25843811(-)$1	248	219	239	10.2464
eeeeesssssssssseeeee	chr9:134349890-134350156(+)$1	266	162	182	15.6981
e!!a[assssssssssa]a2	chr16:89350264-89350500(-)$1	236	184	204	15.0026
cccbbwwwwwwwwwwwwwwb	chr16:89348127-89348411(-)$1	284	70	90	16.1351
gggggssssssssssggggg	chr16:87733212-87733515(-)$1	303	59	79	14.5410
eeeeettttttttttteeee	chr16:87735153-87735409(-)$1	256	232	252	19.9089
:ddddtttttttttttdddd	chr16:89347792-89348081(-)$1	289	211	231	17.7654
ggwwwwwwwwwwwwwwgggg	chr12:124809040-124809363(-)$1	323	174	194	16.5677
!a[bbtttttttttttbb]a	chr16:89350125-89350439(-)$1	314	140	160	18.7225
f!!bbtttttttttttbb22	chr16:87734510-87734761(-)$1	251	177	197	18.4184
eeeeettttttttttteeee	chr16:89347086-89347350(-)$1	264	183	203	19.9089
::ccctttttttttttccc:	chr16:89348751-89348973(-)$1	222	117	137	16.8152
cccbbxxxxxxxxxxxxxxx	chr5:71490506-71490752(+)$1	246	187	207	11.9717
eeeeesssssssssseeeee	chr7:1888838-1889078(-)$1	240	152	172	15.6981
hhhvvvvvvvvvvvvvhhhh	chr16:89350307-89350602(-)$1	295	249	269	15.8001
fddddtttttttttttdddd	chr8:94752885-94753182(-)$1	297	210	230	18.5900
eeeeettttttttttteeee	chr16:89346897-89347146(-)$1	249	62	82	19.9089
!!ccctttttttttttccc2	chr16:87733377-87733640(-)$1	263	55	75	19.4491
[bb[cccrrrrrrrrrcccb	chr7:1132622-1132891(-)$1	269	59	79	9.1975
eeeeesssssssssseeeee	chr7:1006198-1006484(-)$1	286	115	135	15.6981
fffffssssssssssfffff	chr8:94752265-94752496(-)$1	231	94	114	14.1275
bb[bbuuuuuuuuuuuubb]	chr16:89348258-89348499(-)$1	241	195	215	17.6260
C:cccssssssssssccccc	chr1:144931745-144931962(-)$1	217	157	177	13.2015
eeeeettttttttttteeee	chr14:105713567-105713827(-)$1	260	6	26	19.9089
eee[bbssssssssssbb]e	chr22:50013845-50014161(-)$1	316	288	308	14.4464
[ddddssssssssssdddd]	chr19:2270320-2270598(+)$1	278	86	106	14.5889
ffffftttttttttttffff	chr7:1133231-1133471(-)$1	240	78	98	18.4534
b[ccctttttttttttcccb	chr16:89348634-89348889(-)$1	255	33	53	18.9672

#otherMatches

#Seq PSSM
CAGGCGCUUGCCUCUAGCCU	chr16:89346985-89347212(-)$1	227	128	148	19.9089
ACAGGAGAGGGAAGGGGUUG	chr4:1229196-1229413(-)$1	217	183	203	16.8667
CGCCAUCUUGAAAUCUGAUC	chr1:144932076-144932361(-)$1	285	230	250	10.1622
GGGGCAGAUAGGACCAGCCC	chr10:71075446-71075713(+)$1	267	13	33	19.9089
accccgaagccucagggguu	chr20:25843563-25843811(-)$1	248	219	239	10.2464
ACACCCAAAACCUCAGGUGU	chr9:134349890-134350156(+)$1	266	162	182	15.6981
GGAGACGGUGAAGGAGGACA	chr16:89350264-89350500(-)$1	236	184	204	15.0026
GGUGCAGAGAAAGAAAAGGG	chr16:89348127-89348411(-)$1	284	70	90	16.1351
CUUCUACAAGUGAAAAGGAG	chr16:87733212-87733515(-)$1	303	59	79	14.5410
CACCCGGCUACACAUGGGGU	chr16:87735153-87735409(-)$1	256	232	252	19.9089
AGGCCUGACCAGAGCCGGCC	chr16:89347792-89348081(-)$1	289	211	231	17.7654
GAUCUCUGCUUACCGUUCAA	chr12:124809040-124809363(-)$1	323	174	194	16.5677
ACAGCAAGGAGAGGAGGCGG	chr16:89350125-89350439(-)$1	314	140	160	18.7225
UACCGACUGCCUCACCUGAC	chr16:87734510-87734761(-)$1	251	177	197	18.4184
CCAGCUACCUGGAGCCGCUG	chr16:89347086-89347350(-)$1	264	183	203	19.9089
GAGCCAAGAAAGAGAAGGCC	chr16:89348751-89348973(-)$1	222	117	137	16.8152
GCUCAAACAUCUAGACUUUC	chr5:71490506-71490752(+)$1	246	187	207	11.9717
UUUGUGCUGCCAAUAACGAG	chr7:1888838-1889078(-)$1	240	152	172	15.6981
GGGACAUGAAGAGCGACUCU	chr16:89350307-89350602(-)$1	295	249	269	15.8001
GGGCACCCUCUUUUCUUGCU	chr8:94752885-94753182(-)$1	297	210	230	18.5900
CAGGCGCUUGCCUCUAGCCU	chr16:89346897-89347146(-)$1	249	62	82	19.9089
AAAGGACAACCAAGAACCUG	chr16:87733377-87733640(-)$1	263	55	75	19.4491
GUGUCAGAAAUGUUUCCUGC	chr7:1132622-1132891(-)$1	269	59	79	9.1975
cauggguaacugaaaccgug	chr7:1006198-1006484(-)$1	286	115	135	15.6981
UCUACAUUAUAAAAGGUGGA	chr8:94752265-94752496(-)$1	231	94	114	14.1275
GCAACGGGAAUGAUAAGGUA	chr16:89348258-89348499(-)$1	241	195	215	17.6260
AGGCGGGAGACAGAGCGCGG	chr1:144931745-144931962(-)$1	217	157	177	13.2015
gucaggaaggaaaaggcuga	chr14:105713567-105713827(-)$1	260	6	26	19.9089
gcuggcaggaggaaaagcgg	chr22:50013845-50014161(-)$1	316	288	308	14.4464
UGGGCCCCGUUUUUCGCCCC	chr19:2270320-2270598(+)$1	278	86	106	14.5889
UUUUCUUACAUUUUAUGGGA	chr7:1133231-1133471(-)$1	240	78	98	18.4534
GAGCCAAGAAAGAGAAGGCC	chr16:89348634-89348889(-)$1	255	33	53	18.9672

#DB
(((((...........))))	chr16:89346985-89347212(-)$1	1	128	148	19.9089
((..............))).	chr4:1229196-1229413(-)$1	1	183	203	16.8667
.(..(((.........))).	chr1:144932076-144932361(-)$1	1	230	250	10.1622
(((((...........))))	chr10:71075446-71075713(+)$1	1	13	33	19.9089
(((((.........))))))	chr20:25843563-25843811(-)$1	1	219	239	10.2464
(((((..........)))))	chr9:134349890-134350156(+)$1	1	162	182	15.6981
(..(.(..........).).	chr16:89350264-89350500(-)$1	1	184	204	15.0026
(((((..............)	chr16:89348127-89348411(-)$1	1	70	90	16.1351
(((((..........)))))	chr16:87733212-87733515(-)$1	1	59	79	14.5410
(((((...........))))	chr16:87735153-87735409(-)$1	1	232	252	19.9089
.((((...........))))	chr16:89347792-89348081(-)$1	1	211	231	17.7654
((..............))))	chr12:124809040-124809363(-)$1	1	174	194	16.5677
.(.((...........)).)	chr16:89350125-89350439(-)$1	1	140	160	18.7225
(..((...........))..	chr16:87734510-87734761(-)$1	1	177	197	18.4184
(((((...........))))	chr16:89347086-89347350(-)$1	1	183	203	19.9089
..(((...........))).	chr16:89348751-89348973(-)$1	1	117	137	16.8152
(((((...............	chr5:71490506-71490752(+)$1	1	187	207	11.9717
(((((..........)))))	chr7:1888838-1889078(-)$1	1	152	172	15.6981
(((.............))))	chr16:89350307-89350602(-)$1	1	249	269	15.8001
)((((...........))))	chr8:94752885-94753182(-)$1	1	210	230	18.5900
(((((...........))))	chr16:89346897-89347146(-)$1	1	62	82	19.9089
..(((...........))).	chr16:87733377-87733640(-)$1	1	55	75	19.4491
.((.(((.........))))	chr7:1132622-1132891(-)$1	1	59	79	9.1975
(((((..........)))))	chr7:1006198-1006484(-)$1	1	115	135	15.6981
(((((..........)))))	chr8:94752265-94752496(-)$1	1	94	114	14.1275
((.((............)).	chr16:89348258-89348499(-)$1	1	195	215	17.6260
(.(((..........)))((	chr1:144931745-144931962(-)$1	1	157	177	13.2015
(((((...........))))	chr14:105713567-105713827(-)$1	1	6	26	19.9089
(((.((..........)).)	chr22:50013845-50014161(-)$1	1	288	308	14.4464
.((((..........)))).	chr19:2270320-2270598(+)$1	1	86	106	14.5889
(((((...........))))	chr7:1133231-1133471(-)$1	1	78	98	18.4534
(.(((...........))))	chr16:89348634-89348889(-)$1	1	33	53	18.9672

#PSSM
e : 0.37	f : 0.12	c : 0.09	[ : 0.09	g : 0.06	: : 0.06	! : 0.06	b : 0.06	h : 0.03	C : 0.03	
e : 0.34	c : 0.09	! : 0.09	d : 0.09	a : 0.06	g : 0.06	: : 0.06	b : 0.06	f : 0.06	h : 0.03	[ : 0.03	
e : 0.34	c : 0.18	! : 0.09	d : 0.09	w : 0.06	[ : 0.06	f : 0.06	g : 0.03	h : 0.03	b : 0.03	
e : 0.31	b : 0.15	c : 0.12	d : 0.09	w : 0.06	[ : 0.06	f : 0.06	! : 0.03	a : 0.03	g : 0.03	v : 0.03	
e : 0.31	c : 0.18	b : 0.18	d : 0.09	w : 0.06	f : 0.06	[ : 0.03	g : 0.03	v : 0.03	
t : 0.43	s : 0.21	w : 0.09	c : 0.06	r : 0.03	a : 0.03	x : 0.03	v : 0.03	u : 0.03	b : 0.03	
t : 0.43	s : 0.28	w : 0.09	c : 0.06	r : 0.03	x : 0.03	v : 0.03	u : 0.03	
t : 0.43	s : 0.28	w : 0.09	r : 0.09	x : 0.03	v : 0.03	u : 0.03	
t : 0.43	s : 0.28	w : 0.09	r : 0.09	x : 0.03	v : 0.03	u : 0.03	
t : 0.43	s : 0.28	w : 0.09	r : 0.09	x : 0.03	v : 0.03	u : 0.03	
t : 0.43	s : 0.28	w : 0.09	r : 0.09	x : 0.03	v : 0.03	u : 0.03	
t : 0.43	s : 0.28	w : 0.09	r : 0.09	x : 0.03	v : 0.03	u : 0.03	
t : 0.43	s : 0.28	w : 0.09	r : 0.09	x : 0.03	v : 0.03	u : 0.03	
t : 0.43	s : 0.28	w : 0.09	r : 0.09	x : 0.03	v : 0.03	u : 0.03	
t : 0.43	s : 0.28	w : 0.09	r : 0.06	e : 0.03	x : 0.03	v : 0.03	u : 0.03	
t : 0.43	e : 0.12	w : 0.09	r : 0.06	s : 0.06	g : 0.03	x : 0.03	v : 0.03	f : 0.03	u : 0.03	c : 0.03	d : 0.03	
e : 0.31	c : 0.21	d : 0.09	b : 0.09	g : 0.06	f : 0.06	a : 0.03	w : 0.03	x : 0.03	h : 0.03	u : 0.03	
e : 0.31	c : 0.21	b : 0.12	d : 0.09	g : 0.06	f : 0.06	] : 0.03	w : 0.03	x : 0.03	h : 0.03	
e : 0.31	c : 0.21	d : 0.09	g : 0.06	] : 0.06	f : 0.06	a : 0.03	w : 0.03	2 : 0.03	x : 0.03	h : 0.03	b : 0.03	
e : 0.31	] : 0.12	2 : 0.09	b : 0.09	c : 0.06	g : 0.06	d : 0.06	f : 0.06	a : 0.03	: : 0.03	x : 0.03	h : 0.03	

#score	524.2115648491218
#seq	32
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_UTR_m2_run1.txt

#BEAR
c[ccc!!ddddmmmmdddd4444ccc	chr9:117002396-117002646(+)$1	250	87	113	18.4864
a!!bbbbddddmmmmdddd22bb]bb	chr7:2394448-2394708(+)$1	260	149	175	18.1554
fffff!!ddddmmmmddddffffff:	chr9:117073833-117074102(+)$1	269	199	225	16.4246

#otherMatches

#Seq PSSM
CUCUGCUUCCCCUCAGGGAUUCCCAG	chr9:117002396-117002646(+)$1	250	87	113	18.4864
GGAGCGCGCCGAGCCCGGCCAGCAGC	chr7:2394448-2394708(+)$1	260	149	175	18.1554
AGGUCUUGGGUGAAAACUUGACCUUG	chr9:117073833-117074102(+)$1	269	199	225	16.4246

#DB
(.(((..((((....))))....)))	chr9:117002396-117002646(+)$1	1	87	113	18.4864
(..((((((((....))))..)).))	chr7:2394448-2394708(+)$1	1	149	175	18.1554
(((((..((((....)))))))))).	chr9:117073833-117074102(+)$1	1	199	225	16.4246

#PSSM
c : 0.33	a : 0.33	f : 0.33	
[ : 0.33	! : 0.33	f : 0.33	
c : 0.33	! : 0.33	f : 0.33	
c : 0.33	b : 0.33	f : 0.33	
c : 0.33	b : 0.33	f : 0.33	
! : 0.66	b : 0.33	
! : 0.66	b : 0.33	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
4 : 0.33	2 : 0.33	f : 0.33	
4 : 0.33	2 : 0.33	f : 0.33	
4 : 0.33	b : 0.33	f : 0.33	
4 : 0.33	b : 0.33	f : 0.33	
c : 0.33	] : 0.33	f : 0.33	
c : 0.33	b : 0.33	f : 0.33	
c : 0.33	b : 0.33	: : 0.33	

#score	53.066547441633325
#seq	3
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_CDS_m2_run2.txt

#BEAR
ccc[ccc!!ddddcccooooooccc4444dddd	chr2:101437396-101437653(+)$1	257	128	161	12.2061
gggg22bb]ffffffddddlllddddggggggg	chr22:29684629-29684877(+)$1	248	171	204	11.7455
gggggg!!ggggggg[ccclllccc]ggggggg	chr13:98828467-98828734(+)$1	267	101	134	14.2552
==========eeeee!!bboooooobb]eeeee	chr16:2580590-2580881(+)$1	291	121	154	12.0953
b!!hhhhhhhheeeeeooooooeeeee333hhh	chr8:134308518-134308847(-)$1	329	191	224	12.2054
[ffffff!!a[a[fffffflllffffff]aa22	chr19:2270253-2270568(+)$1	315	255	288	11.1770
e[hhhhhhhh[eeeeeccclllccc333eeeee	chr14:32546526-32546800(+)$1	274	20	53	14.9377
ccc[bb!!ccc[bb!!cccmmmmccc]bbccc2	chr10:696824-697131(-)$1	307	57	90	10.6287
####dddd[eeeee[ddddllldddd]eeeee]	chr11:18425235-18425451(+)$1	216	159	192	14.9872
bb!!dddd[eeeee[ddddllldddd]eeeee]	chr11:18425214-18425435(+)$1	221	180	213	14.8975

#otherMatches

#Seq PSSM
UUCCCAGCCGAGGAGGGACGCACCUUUGACCUU	chr2:101437396-101437653(+)$1	257	128	161	12.2061
ACCUAAUUUUGUUUCAUCCAUAGGAUUUUCAGU	chr22:29684629-29684877(+)$1	248	171	204	11.7455
UCAGUUCUUUGGCGGGGUUAAAGAUGCCGCCGG	chr13:98828467-98828734(+)$1	267	101	134	14.2552
AAGGGAACAGCCAGGGAAGAACCACCUGCCUGG	chr16:2580590-2580881(+)$1	291	121	154	12.0953
CAGGGUGCGCCCCCGGAGGAACCCGGGAUUGGC	chr8:134308518-134308847(-)$1	329	191	224	12.2054
CGCCGGGGAGCUGGGGGUGGCGCACUCCGACAG	chr19:2270253-2270568(+)$1	315	255	288	11.1770
GCGGCGGCGGGAGCGGUCCCCAGGAAUgucgcu	chr14:32546526-32546800(+)$1	274	20	53	14.9377
GACAUUGACUGAGUGUGGCGAGAGCUGGCCAGG	chr10:696824-697131(-)$1	307	57	90	10.6287
ACAUUUACUAUUUUUAUUUAAAAGGUUAAAAUU	chr11:18425235-18425451(+)$1	216	159	192	14.9872
ACAUUUACUAUUUUUAUUUAAAAGGUUAAAAUU	chr11:18425214-18425435(+)$1	221	180	213	14.8975

#DB
(((.(((..(((((((......)))....))))	chr2:101437396-101437653(+)$1	1	128	161	12.2061
))))..)).))))))((((...))))(((((((	chr22:29684629-29684877(+)$1	1	171	204	11.7455
((((((..(((((((.(((...))).)))))))	chr13:98828467-98828734(+)$1	1	101	134	14.2552
))))))))))(((((..((......)).)))))	chr16:2580590-2580881(+)$1	1	121	154	12.0953
(..(((((((((((((......)))))...)))	chr8:134308518-134308847(-)$1	1	191	224	12.2054
.((((((..(.(.((((((...)))))).))..	chr19:2270253-2270568(+)$1	1	255	288	11.1770
(.((((((((.((((((((...)))...)))))	chr14:32546526-32546800(+)$1	1	20	53	14.9377
(((.((..(((.((..(((....))).))))).	chr10:696824-697131(-)$1	1	57	90	10.6287
....((((.(((((.((((...)))).))))).	chr11:18425235-18425451(+)$1	1	159	192	14.9872
((..((((.(((((.((((...)))).))))).	chr11:18425214-18425435(+)$1	1	180	213	14.8975

#PSSM
c : 0.20	g : 0.20	b : 0.20	= : 0.10	[ : 0.10	e : 0.10	# : 0.10	
c : 0.20	g : 0.20	= : 0.10	! : 0.10	f : 0.10	[ : 0.10	# : 0.10	b : 0.10	
c : 0.20	g : 0.20	! : 0.20	= : 0.10	f : 0.10	h : 0.10	# : 0.10	
[ : 0.20	g : 0.20	h : 0.20	= : 0.10	f : 0.10	# : 0.10	! : 0.10	
h : 0.20	d : 0.20	c : 0.10	2 : 0.10	g : 0.10	= : 0.10	f : 0.10	b : 0.10	
h : 0.20	d : 0.20	c : 0.10	2 : 0.10	g : 0.10	= : 0.10	f : 0.10	b : 0.10	
! : 0.20	h : 0.20	d : 0.20	c : 0.10	b : 0.10	= : 0.10	f : 0.10	
! : 0.40	h : 0.20	d : 0.20	b : 0.10	= : 0.10	
! : 0.20	h : 0.20	[ : 0.20	] : 0.10	g : 0.10	= : 0.10	c : 0.10	
h : 0.20	e : 0.20	d : 0.10	f : 0.10	g : 0.10	= : 0.10	a : 0.10	c : 0.10	
e : 0.30	[ : 0.20	d : 0.10	f : 0.10	g : 0.10	h : 0.10	c : 0.10	
e : 0.50	d : 0.10	f : 0.10	g : 0.10	a : 0.10	[ : 0.10	
e : 0.50	d : 0.10	f : 0.10	g : 0.10	[ : 0.10	b : 0.10	
e : 0.50	f : 0.20	c : 0.10	g : 0.10	b : 0.10	
e : 0.30	f : 0.20	[ : 0.20	c : 0.10	g : 0.10	! : 0.10	
d : 0.30	! : 0.20	e : 0.20	c : 0.10	[ : 0.10	f : 0.10	
d : 0.30	c : 0.30	o : 0.20	! : 0.10	f : 0.10	
d : 0.30	c : 0.30	o : 0.20	b : 0.10	f : 0.10	
d : 0.30	c : 0.30	o : 0.20	b : 0.10	f : 0.10	
l : 0.60	o : 0.30	m : 0.10	
l : 0.60	o : 0.30	m : 0.10	
l : 0.60	o : 0.30	m : 0.10	
c : 0.30	d : 0.30	o : 0.10	e : 0.10	f : 0.10	m : 0.10	
c : 0.40	d : 0.30	o : 0.10	e : 0.10	f : 0.10	
c : 0.40	d : 0.30	o : 0.10	e : 0.10	f : 0.10	
d : 0.30	4 : 0.10	] : 0.10	b : 0.10	e : 0.10	f : 0.10	3 : 0.10	c : 0.10	
] : 0.30	g : 0.20	4 : 0.10	b : 0.10	e : 0.10	f : 0.10	3 : 0.10	
g : 0.20	3 : 0.20	e : 0.20	4 : 0.10	] : 0.10	f : 0.10	b : 0.10	
e : 0.40	g : 0.20	4 : 0.10	3 : 0.10	] : 0.10	b : 0.10	
e : 0.40	g : 0.20	d : 0.10	3 : 0.10	a : 0.10	c : 0.10	
e : 0.40	g : 0.20	d : 0.10	h : 0.10	a : 0.10	c : 0.10	
e : 0.40	g : 0.20	d : 0.10	h : 0.10	2 : 0.10	c : 0.10	
g : 0.20	e : 0.20	2 : 0.20	] : 0.20	d : 0.10	h : 0.10	

#score	129.13605966575997
#seq	10
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_transcript_m1_run2.txt

#BEAR
fffffvvvvvvvvvvvvvffffff	chr19:39949757-39949989(+)$1	232	118	142	23.8734
======uuuuuuuuuuuu======	chr17:30323716-30323983(+)$1	267	185	209	24.0747
fffffftttttttttttffffff2	chr18:47014819-47015027(-)$1	208	61	85	22.0435
d!!bbvvvvvvvvvvvvvbb22dd	chr2:232325124-232325328(-)$1	204	89	113	22.0891
fffffwwwwwwwwwwwwwwfffff	chr2:36808323-36808605(-)$1	282	32	56	22.6942
ggeeeeettttttttttteeeee:	chr6:86322415-86322699(-)$1	284	149	173	21.5421
b!!a[bbtttttttttttbb]a22	chr15:64008400-64008615(-)$1	215	95	119	21.1649
fffffftttttttttttffffff:	chr14:73563562-73563797(+)$1	235	0	24	21.2159
[ddddwwwwwwwwwwwwwwdddd]	chr5:149827172-149827376(-)$1	204	23	47	22.0604
eeeeewwwwwwwwwwwwwweeeee	chr7:5780572-5780819(-)$1	247	25	49	22.4929
##cccvvvvvvvvvvvvvccc333	chr12:51634021-51634341(+)$1	320	153	177	23.8604
eeeewwwwwwwwwwwwwweeeee]	chr9:139836513-139836777(-)$1	264	12	36	22.1760
ceeeeevvvvvvvvvvvvveeeee	chr2:99980164-99980397(+)$1	233	126	150	23.5629
ddd!!attttttttttta22dddd	chr20:39794014-39794291(+)$1	277	147	171	21.2894
ddddwwwwwwwwwwwwwwddddee	chr2:197654538-197654895(-)$1	357	205	229	21.1840
[eeeeeyyyyyyyyyyyyyyyyee	chr4:174169092-174169510(+)$1	418	237	261	19.5610
"eeeeeuuuuuuuuuuuueeeee2	chr1:38489116-38489403(+)$1	287	236	260	23.5811
fffffwwwwwwwwwwwwwwfffff	chr11:27362148-27362431(-)$1	283	230	254	22.6942
gggggggtttttttttttgggggg	chr14:102493707-102493960(+)$1	253	1	25	22.6900
$eeeeevvvvvvvvvvvvveeeee	chr2:20491247-20491551(-)$1	304	37	61	23.3889
gggggggtttttttttttgggggg	chr4:74005588-74005847(-)$1	259	90	114	22.6900
ccc[bbuuuuuuuuuuuubb]ccc	chr11:62494450-62494779(-)$1	329	144	168	22.6495
iiiiiiuuuuuuuuuuuuiiiiii	chrX:153998975-153999249(+)$1	274	190	214	23.7734
fffffvvvvvvvvvvvvvffffff	chr2:128522305-128522654(-)$1	349	197	221	23.8734
hhhhhvvvvvvvvvvvvvhhhhhh	chr7:139097195-139097406(+)$1	211	76	100	21.6833
[ddddvvvvvvvvvvvvvdddd]e	chr5:70806179-70806523(+)$1	344	232	256	23.1253
"""cccuuuuuuuuuuuuccc444	chr2:99980769-99980981(+)$1	212	83	107	23.5660
f!!ccctttttttttttccc333f	chr11:34167638-34167913(+)$1	275	164	188	22.5969
#fffffftttttttttttffffff	chr5:162898268-162898537(+)$1	269	227	251	22.4040
d!!bbvvvvvvvvvvvvvbb22dd	chr2:232325088-232325289(-)$1	201	50	74	22.0891
gggggguuuuuuuuuuuugggggg	chr7:38908671-38908954(-)$1	283	239	263	24.1399
hhhhhhuuuuuuuuuuuuhhhhhh	chr9:128000770-128001027(-)$1	257	144	168	21.3515
eeeeevvvvvvvvvvvvveeeeef	chr8:145665999-145666248(-)$1	249	156	180	23.6974
[ddddwwwwwwwwwwwwwwdddd]	chr17:65850464-65850762(+)$1	298	84	108	22.0604
gg!!ccctttttttttttccc22g	chr9:100774641-100774854(+)$1	213	58	82	22.5943
ff[cccuuuuuuuuuuuucccfff	chr5:110835605-110835904(-)$1	299	272	296	24.0439
ffffffuuuuuuuuuuuuffffff	chr3:196666116-196666365(-)$1	249	170	194	23.7746
[ddddwwwwwwwwwwwwwwdddd]	chr5:149827158-149827369(-)$1	211	16	40	22.0604
cc[ddddtttttttttttdddd]c	chr2:180835280-180835574(-)$1	294	90	114	21.6768
eeeeevvvvvvvvvvvvveeeeeF	chr1:114948045-114948457(-)$1	412	183	207	23.3643
[eeeeevvvvvvvvvvvvveeeee	chr12:124081099-124081362(+)$1	263	38	62	23.7643
bbeeeeettttttttttteeeee]	chr11:16769577-16769805(+)$1	228	92	116	21.9401
::cccvvvvvvvvvvvvvcccggg	chr8:42257091-42257322(+)$1	231	126	150	21.8355
geeeeeuuuuuuuuuuuueeeee:	chr6:135786897-135787257(-)$1	360	136	160	22.8051
g[a!!auuuuuuuuuuuua22a]g	chr1:231664916-231665209(+)$1	293	199	223	23.5005
!!dddduuuuuuuuuuuudddd22	chr5:149779347-149779639(+)$1	292	108	132	22.8295
beeeeeuuuuuuuuuuuueeeee]	chr16:89349996-89350283(-)$1	287	174	198	23.5417
====wwwwwwwwwwwwww======	chr17:7481044-7481275(+)$1	231	126	150	22.4622
ffffffuuuuuuuuuuuuffffff	chr6:168281080-168281296(+)$1	216	147	171	23.7746
!bb[ccctttttttttttccc]bb	chr16:9024061-9024325(-)$1	264	107	131	21.6316
f[bb[auuuuuuuuuuuua]bb]f	chr4:79793760-79794049(+)$1	289	19	43	22.8744
gggccctttttttttttccc]ggg	chr3:142741237-142741565(+)$1	328	265	289	22.7509
gggggguuuuuuuuuuuugggggg	chr12:7030685-7030962(+)$1	277	82	106	24.1399
fffyyyyyyyyyyyyyyyyfffff	chr13:92002365-92002617(+)$1	252	141	165	20.0913
[eeeeewwwwwwwwwwwwwweeee	chr5:149772924-149773144(+)$1	220	110	134	22.2519
e[ddddwwwwwwwwwwwwwwdddd	chr11:77327600-77327839(-)$1	239	148	172	21.2318
fffffftttttttttttffffff:	chr5:145523961-145524172(-)$1	211	16	40	21.2159
ggggggwwwwwwwwwwwwwwgggg	chr14:31588842-31589161(-)$1	319	268	292	22.5182
ffffffuuuuuuuuuuuuffffff	chrX:102933372-102933633(-)$1	261	52	76	23.7746
ggggggwwwwwwwwwwwwwwgggg	chr11:64785772-64786046(+)$1	274	109	133	22.5182
ffffffuuuuuuuuuuuuffffff	chrX:70783211-70783450(+)$1	239	83	107	23.7746
gggggggtttttttttttgggggg	chr7:157000398-157000652(+)$1	254	96	120	22.6900
[fffffftttttttttttffffff	chr20:42310344-42310592(+)$1	248	56	80	22.5846
f"""bbvvvvvvvvvvvvvbb333	chr2:242206112-242206414(-)$1	302	186	210	22.5947
bb[cccuuuuuuuuuuuuccc]bb	chr20:47682627-47682885(+)$1	258	58	82	22.8171
fffffvvvvvvvvvvvvvffffff	chr2:71633181-71633500(+)$1	319	110	134	23.8734
cc[ddddtttttttttttdddd33	chr9:140074553-140074837(-)$1	284	177	201	21.7787
gggggguuuuuuuuuuuugggggg	chr11:63398604-63398921(-)$1	317	59	83	24.1399
!!ddddwwwwwwwwwwwwwwdddd	chr4:104101369-104101613(-)$1	244	116	140	21.4257
gggggguuuuuuuuuuuugggggg	chr3:156869436-156869703(-)$1	267	54	78	24.1399

#otherMatches

#Seq PSSM
CUCCCAGGAGUCAAGUAAGGGGGU	chr19:39949757-39949989(+)$1	232	118	142	23.8734
GUAUUUCuaaauuaauuuaaauau	chr17:30323716-30323983(+)$1	267	185	209	24.0747
AAGAAACUUAACACAUUUUUCUUU	chr18:47014819-47015027(-)$1	208	61	85	22.0435
AAAUGGCCAAACAGAAAGCAGCUC	chr2:232325124-232325328(-)$1	204	89	113	22.0891
UUAUUGAAGAAAUUGAAGAAAUGA	chr2:36808323-36808605(-)$1	282	32	56	22.6942
GGUAAGGAAAUCAAGCAACCUUAA	chr6:86322415-86322699(-)$1	284	149	173	21.5421
UGAAGUGAUGACAGCUGGCAGUGA	chr15:64008400-64008615(-)$1	215	95	119	21.1649
GAGUGAUUUUGAUUUUCUUGCUUG	chr14:73563562-73563797(+)$1	235	0	24	21.2159
GGGAUUCUGGAAAUGUUUUGUCUG	chr5:149827172-149827376(-)$1	204	23	47	22.0604
CAGGCCCCUCUUCUCCUCAGCCUG	chr7:5780572-5780819(-)$1	247	25	49	22.4929
CAGUAUACCCUCAGACCUUGCAUC	chr12:51634021-51634341(+)$1	320	153	177	23.8604
UGCCGCAUCUUUGACCUGGGCAGC	chr9:139836513-139836777(-)$1	264	12	36	22.1760
GGCUUGAAGAAUUAGAAGCCAAGC	chr2:99980164-99980397(+)$1	233	126	150	23.5629
GGCAACGAGGAUGAGGAGGAGCCC	chr20:39794014-39794291(+)$1	277	147	171	21.2894
CCCAGUGACACAGAAGAAUGGGUU	chr2:197654538-197654895(-)$1	357	205	229	21.1840
AGAGGCAGUAUCUCACAUUUAAGC	chr4:174169092-174169510(+)$1	418	237	261	19.5610
UAGUAACUUCAAAUUCCAUUACUC	chr1:38489116-38489403(+)$1	287	236	260	23.5811
AGAAGCAAAUAUUAUACUCCUUUU	chr11:27362148-27362431(-)$1	283	230	254	22.6942
UGCUUCUGUAGGUCCAUAGGAAGU	chr14:102493707-102493960(+)$1	253	1	25	22.6900
GCAUGUGAGGCAAUAAAAGACAUG	chr2:20491247-20491551(-)$1	304	37	61	23.3889
UUCAGAAGAAACAAAAGAUUUUGG	chr4:74005588-74005847(-)$1	259	90	114	22.6900
ggcggcgauggaggugaagcggcu	chr11:62494450-62494779(-)$1	329	144	168	22.6495
UGUUUAUUUUUUAAAUUCUAaaug	chrX:153998975-153999249(+)$1	274	190	214	23.7734
AACAUGAACAACGUCAAGAUGUUC	chr2:128522305-128522654(-)$1	349	197	221	23.8734
AAAAAUACAUAUUUUUUUUUUUUA	chr7:139097195-139097406(+)$1	211	76	100	21.6833
CCUGUAGAUGAAAUGGAGACAGAC	chr5:70806179-70806523(+)$1	344	232	256	23.1253
CGAAGCUACUCUUAAACUGCUACA	chr2:99980769-99980981(+)$1	212	83	107	23.5660
CUGGCUGGACUGUUAAAAGCAACG	chr11:34167638-34167913(+)$1	275	164	188	22.5969
UGUUAAGUGGAAGCAAUUCUUGAU	chr5:162898268-162898537(+)$1	269	227	251	22.4040
AAAUGGCCAAACAGAAAGCAGCUC	chr2:232325088-232325289(-)$1	201	50	74	22.0891
UAAAUUGUUUCCAUUGUAAAUUUG	chr7:38908671-38908954(-)$1	283	239	263	24.1399
GUGAUCAAGAUACAGGUAGGUCAU	chr9:128000770-128001027(-)$1	257	144	168	21.3515
CUUGCUCCCCGCCCGAAUGCAGGU	chr8:145665999-145666248(-)$1	249	156	180	23.6974
UCAGUUUCUUACAACAAAUAUUGC	chr17:65850464-65850762(+)$1	298	84	108	22.0604
UAGGAAGAAGAAUUUGGACUUGAU	chr9:100774641-100774854(+)$1	213	58	82	22.5943
GGCAAGCACUUUAACCAACUUCUA	chr5:110835605-110835904(-)$1	299	272	296	24.0439
AGUGGUGACAUAAAGAAAAUCAUU	chr3:196666116-196666365(-)$1	249	170	194	23.7746
GGGAUUCUGGAAAUGUUUUGUCUG	chr5:149827158-149827369(-)$1	211	16	40	22.0604
UCAAGGACCACCCCAUUAUCCUAG	chr2:180835280-180835574(-)$1	294	90	114	21.6768
UGCAGAUAUGAAUGAAAGCUGCAA	chr1:114948045-114948457(-)$1	412	183	207	23.3643
UUUGUCCUCAACAGUCAACGACAA	chr12:124081099-124081362(+)$1	263	38	62	23.7643
AGGAGAUCACAAAUCAACAUCUCA	chr11:16769577-16769805(+)$1	228	92	116	21.9401
CAGGGUAAUUAUUCAAAUCCCAUU	chr8:42257091-42257322(+)$1	231	126	150	21.8355
UGCCAUGUAACUGAAGAAAUGGCA	chr6:135786897-135787257(-)$1	360	136	160	22.8051
UGCAAUGUAAGUUGAAGAAGGGGA	chr1:231664916-231665209(+)$1	293	199	223	23.5005
ACCUUCCCUCGCUCCACAGAAGAA	chr5:149779347-149779639(+)$1	292	108	132	22.8295
CGGGCGGGACAGAAAGGACGCCCU	chr16:89349996-89350283(-)$1	287	174	198	23.5417
AGACGUGAUUAUGAGGGAGUUUCG	chr17:7481044-7481275(+)$1	231	126	150	22.4622
UCUACUUCACAUUUAAAUGGUAGA	chr6:168281080-168281296(+)$1	216	147	171	23.7746
ACCCUGUGAUCAAUGGGAAUGUGG	chr16:9024061-9024325(-)$1	264	107	131	21.6316
CAGCAGGCUUUCUUUCAACAGCAG	chr4:79793760-79794049(+)$1	289	19	43	22.8744
UGGUAAGAACAUUUUUAUUAUCCA	chr3:142741237-142741565(+)$1	328	265	289	22.7509
ACCAGGAUGAUUGGGCUGCCUGGU	chr12:7030685-7030962(+)$1	277	82	106	24.1399
AUGUUCCAAAAUUAGUUCUCAUUU	chr13:92002365-92002617(+)$1	252	141	165	20.0913
CUCUGGCCGCCAAAGAUGACCCAG	chr5:149772924-149773144(+)$1	220	110	134	22.2519
GUGAAGUUAAUGAAAGUCUUUUUC	chr11:77327600-77327839(-)$1	239	148	172	21.2318
AGUCAAUUUGCUCACCUUUGACUU	chr5:145523961-145524172(-)$1	211	16	40	21.2159
GAUUUAAUUUUAAUACAUACUAAA	chr14:31588842-31589161(-)$1	319	268	292	22.5182
AGAUGAUUUCACAAAAGUUCAUCU	chrX:102933372-102933633(-)$1	261	52	76	23.7746
GGGGAGGACAUCGACACCAUCUCC	chr11:64785772-64786046(+)$1	274	109	133	22.5182
GAUUCAAAUAACAAUUAAUGGAUU	chrX:70783211-70783450(+)$1	239	83	107	23.7746
UUGGCUUAUCCAGAAACCAAGCCA	chr7:157000398-157000652(+)$1	254	96	120	22.6900
CCCUGUCUUUCUGGUGUUGGCAGG	chr20:42310344-42310592(+)$1	248	56	80	22.5846
GGUUCCGCAACAAAUCAAAGGUGA	chr2:242206112-242206414(-)$1	302	186	210	22.5947
UGUGGAUUUUGUGUUACUUCCUCA	chr20:47682627-47682885(+)$1	258	58	82	22.8171
AUCUUGAUAAUUUACCGGAAGAUG	chr2:71633181-71633500(+)$1	319	110	134	23.8734
UUACUGCAAGAAGUAUGAGCAGCU	chr9:140074553-140074837(-)$1	284	177	201	21.7787
CAUUUUAAGAAGACCAAGAAGAUG	chr11:63398604-63398921(-)$1	317	59	83	24.1399
UCUUCCCUCACGUUGCAACAGGAA	chr4:104101369-104101613(-)$1	244	116	140	21.4257
UUGGCUACCCUGCUCUCCAGCCAA	chr3:156869436-156869703(-)$1	267	54	78	24.1399

#DB
(((((.............))))))	chr19:39949757-39949989(+)$1	1	118	142	23.8734
((((((............))))))	chr17:30323716-30323983(+)$1	1	185	209	24.0747
((((((...........)))))).	chr18:47014819-47015027(-)$1	1	61	85	22.0435
(..((.............))..))	chr2:232325124-232325328(-)$1	1	89	113	22.0891
(((((..............)))))	chr2:36808323-36808605(-)$1	1	32	56	22.6942
))(((((...........))))).	chr6:86322415-86322699(-)$1	1	149	173	21.5421
(..(.((...........)).)..	chr15:64008400-64008615(-)$1	1	95	119	21.1649
((((((...........)))))).	chr14:73563562-73563797(+)$1	1	0	24	21.2159
.((((..............)))).	chr5:149827172-149827376(-)$1	1	23	47	22.0604
(((((..............)))))	chr7:5780572-5780819(-)$1	1	25	49	22.4929
..(((.............)))...	chr12:51634021-51634341(+)$1	1	153	177	23.8604
((((..............))))).	chr9:139836513-139836777(-)$1	1	12	36	22.1760
)(((((.............)))))	chr2:99980164-99980397(+)$1	1	126	150	23.5629
(((..(...........)..))))	chr20:39794014-39794291(+)$1	1	147	171	21.2894
((((..............))))))	chr2:197654538-197654895(-)$1	1	205	229	21.1840
.(((((................))	chr4:174169092-174169510(+)$1	1	237	261	19.5610
.(((((............))))).	chr1:38489116-38489403(+)$1	1	236	260	23.5811
(((((..............)))))	chr11:27362148-27362431(-)$1	1	230	254	22.6942
(((((((...........))))))	chr14:102493707-102493960(+)$1	1	1	25	22.6900
.(((((.............)))))	chr2:20491247-20491551(-)$1	1	37	61	23.3889
(((((((...........))))))	chr4:74005588-74005847(-)$1	1	90	114	22.6900
(((.((............)).)))	chr11:62494450-62494779(-)$1	1	144	168	22.6495
((((((............))))))	chrX:153998975-153999249(+)$1	1	190	214	23.7734
(((((.............))))))	chr2:128522305-128522654(-)$1	1	197	221	23.8734
(((((.............))))))	chr7:139097195-139097406(+)$1	1	76	100	21.6833
.((((.............)))).)	chr5:70806179-70806523(+)$1	1	232	256	23.1253
...(((............)))...	chr2:99980769-99980981(+)$1	1	83	107	23.5660
(..(((...........)))...)	chr11:34167638-34167913(+)$1	1	164	188	22.5969
.((((((...........))))))	chr5:162898268-162898537(+)$1	1	227	251	22.4040
(..((.............))..))	chr2:232325088-232325289(-)$1	1	50	74	22.0891
((((((............))))))	chr7:38908671-38908954(-)$1	1	239	263	24.1399
((((((............))))))	chr9:128000770-128001027(-)$1	1	144	168	21.3515
(((((.............))))))	chr8:145665999-145666248(-)$1	1	156	180	23.6974
.((((..............)))).	chr17:65850464-65850762(+)$1	1	84	108	22.0604
((..(((...........)))..)	chr9:100774641-100774854(+)$1	1	58	82	22.5943
((.(((............))))))	chr5:110835605-110835904(-)$1	1	272	296	24.0439
((((((............))))))	chr3:196666116-196666365(-)$1	1	170	194	23.7746
.((((..............)))).	chr5:149827158-149827369(-)$1	1	16	40	22.0604
((.((((...........)))).)	chr2:180835280-180835574(-)$1	1	90	114	21.6768
(((((.............))))))	chr1:114948045-114948457(-)$1	1	183	207	23.3643
.(((((.............)))))	chr12:124081099-124081362(+)$1	1	38	62	23.7643
(((((((...........))))).	chr11:16769577-16769805(+)$1	1	92	116	21.9401
..(((.............)))(((	chr8:42257091-42257322(+)$1	1	126	150	21.8355
)(((((............))))).	chr6:135786897-135787257(-)$1	1	136	160	22.8051
(.(..(............)..).)	chr1:231664916-231665209(+)$1	1	199	223	23.5005
..((((............))))..	chr5:149779347-149779639(+)$1	1	108	132	22.8295
((((((............))))).	chr16:89349996-89350283(-)$1	1	174	198	23.5417
((((..............))))))	chr17:7481044-7481275(+)$1	1	126	150	22.4622
((((((............))))))	chr6:168281080-168281296(+)$1	1	147	171	23.7746
.((.(((...........))).))	chr16:9024061-9024325(-)$1	1	107	131	21.6316
(.((.(............).)).)	chr4:79793760-79794049(+)$1	1	19	43	22.8744
((((((...........))).)))	chr3:142741237-142741565(+)$1	1	265	289	22.7509
((((((............))))))	chr12:7030685-7030962(+)$1	1	82	106	24.1399
(((................)))))	chr13:92002365-92002617(+)$1	1	141	165	20.0913
.(((((..............))))	chr5:149772924-149773144(+)$1	1	110	134	22.2519
(.((((..............))))	chr11:77327600-77327839(-)$1	1	148	172	21.2318
((((((...........)))))).	chr5:145523961-145524172(-)$1	1	16	40	21.2159
((((((..............))))	chr14:31588842-31589161(-)$1	1	268	292	22.5182
((((((............))))))	chrX:102933372-102933633(-)$1	1	52	76	23.7746
((((((..............))))	chr11:64785772-64786046(+)$1	1	109	133	22.5182
((((((............))))))	chrX:70783211-70783450(+)$1	1	83	107	23.7746
(((((((...........))))))	chr7:157000398-157000652(+)$1	1	96	120	22.6900
.((((((...........))))))	chr20:42310344-42310592(+)$1	1	56	80	22.5846
(...((.............))...	chr2:242206112-242206414(-)$1	1	186	210	22.5947
((.(((............))).))	chr20:47682627-47682885(+)$1	1	58	82	22.8171
(((((.............))))))	chr2:71633181-71633500(+)$1	1	110	134	23.8734
((.((((...........))))..	chr9:140074553-140074837(-)$1	1	177	201	21.7787
((((((............))))))	chr11:63398604-63398921(-)$1	1	59	83	24.1399
..((((..............))))	chr4:104101369-104101613(-)$1	1	116	140	21.4257
((((((............))))))	chr3:156869436-156869703(-)$1	1	54	78	24.1399

#PSSM
f : 0.24	g : 0.20	[ : 0.11	e : 0.07	d : 0.05	b : 0.05	c : 0.05	! : 0.04	= : 0.02	# : 0.02	" : 0.02	h : 0.02	$ : 0.01	i : 0.01	: : 0.01	
f : 0.22	g : 0.17	e : 0.17	! : 0.08	d : 0.08	c : 0.04	b : 0.04	[ : 0.04	= : 0.02	h : 0.02	" : 0.02	# : 0.01	i : 0.01	: : 0.01	
f : 0.21	e : 0.20	g : 0.14	d : 0.12	! : 0.07	[ : 0.05	c : 0.04	= : 0.02	h : 0.02	" : 0.02	b : 0.02	i : 0.01	a : 0.01	
f : 0.20	e : 0.20	d : 0.14	g : 0.12	c : 0.10	b : 0.04	! : 0.04	= : 0.02	[ : 0.02	h : 0.02	a : 0.01	i : 0.01	y : 0.01	" : 0.01	
f : 0.20	e : 0.18	d : 0.12	c : 0.12	g : 0.12	b : 0.05	w : 0.04	[ : 0.02	! : 0.02	h : 0.02	= : 0.01	i : 0.01	y : 0.01	
v : 0.15	e : 0.14	f : 0.12	w : 0.12	g : 0.12	c : 0.10	d : 0.07	b : 0.04	a : 0.04	= : 0.01	i : 0.01	h : 0.01	y : 0.01	
u : 0.30	v : 0.21	w : 0.20	t : 0.08	g : 0.04	e : 0.02	y : 0.02	f : 0.02	c : 0.02	d : 0.02	b : 0.01	
u : 0.30	t : 0.25	v : 0.21	w : 0.20	y : 0.02	
u : 0.30	t : 0.25	v : 0.21	w : 0.20	y : 0.02	
u : 0.30	t : 0.25	v : 0.21	w : 0.20	y : 0.02	
u : 0.30	t : 0.25	v : 0.21	w : 0.20	y : 0.02	
u : 0.30	t : 0.25	v : 0.21	w : 0.20	y : 0.02	
u : 0.30	t : 0.25	v : 0.21	w : 0.20	y : 0.02	
u : 0.30	t : 0.25	v : 0.21	w : 0.20	y : 0.02	
u : 0.30	t : 0.25	v : 0.21	w : 0.20	y : 0.02	
u : 0.30	t : 0.25	v : 0.21	w : 0.20	y : 0.02	
u : 0.30	t : 0.25	v : 0.21	w : 0.20	y : 0.02	
u : 0.30	v : 0.21	w : 0.20	t : 0.17	f : 0.04	y : 0.02	c : 0.02	a : 0.01	
f : 0.17	w : 0.15	c : 0.12	e : 0.11	g : 0.10	d : 0.07	b : 0.05	v : 0.05	= : 0.02	y : 0.02	h : 0.02	a : 0.02	2 : 0.01	i : 0.01	
f : 0.21	e : 0.17	c : 0.12	d : 0.11	g : 0.10	b : 0.07	w : 0.07	= : 0.02	2 : 0.02	h : 0.02	y : 0.01	i : 0.01	] : 0.01	
f : 0.21	e : 0.18	d : 0.15	g : 0.12	c : 0.10	2 : 0.04	] : 0.04	= : 0.02	h : 0.02	b : 0.02	y : 0.01	i : 0.01	3 : 0.01	
f : 0.22	e : 0.18	d : 0.15	g : 0.15	2 : 0.04	3 : 0.04	= : 0.02	a : 0.02	h : 0.02	] : 0.02	y : 0.01	c : 0.01	i : 0.01	4 : 0.01	b : 0.01	
f : 0.22	e : 0.21	g : 0.15	d : 0.11	3 : 0.05	] : 0.05	2 : 0.04	= : 0.02	h : 0.02	b : 0.02	c : 0.01	i : 0.01	4 : 0.01	
f : 0.22	g : 0.18	e : 0.11	] : 0.08	d : 0.07	2 : 0.05	: : 0.05	3 : 0.04	= : 0.02	c : 0.02	h : 0.02	b : 0.02	i : 0.01	4 : 0.01	F : 0.01	

#score	1585.727549827056
#seq	70
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_CDS_m2_run1.txt

#BEAR
eeee^^^^^^^^^^^^^^^^^^eeeee	chrM:8567-8773(+)$1	206	26	53	20.4509
^^^^^^^^^^^^^^^^^^^^eeeee22	chrM:13563-13766(+)$1	203	120	147	21.7217
g"""ddddvvvvvvvvvvvvvdddd66	chrM:9251-9468(+)$1	217	130	157	20.5545
iiiiiiiiwwwwwwwwwwwwwwiiiii	chr12:32893065-32893347(-)$1	282	68	95	19.6075
:eeeeewwwwwwwwwwwwwweeeeecc	chr6:87968214-87968511(+)$1	297	188	215	20.8181
#ggggggguuuuuuuuuuuuggggggg	chr12:56717544-56717877(-)$1	333	168	195	19.8785
eeee^^^^^^^^^^^^^^^^^^eeeee	chrM:8573-8778(+)$1	205	20	47	20.4509
eeee[ddddtttttttttttdddd22e	chr5:65364522-65364852(+)$1	330	153	180	18.0861
ee::dddduuuuuuuuuuuudddd:dd	chr2:153499794-153500073(+)$1	279	145	172	18.0147
eeeeexxxxxxxxxxxxxxxeeeee::	chr10:97131047-97131348(-)$1	301	265	292	18.1452
^^^^^^^^^^^^^^^^^^^^eeeee22	chrM:13595-13800(+)$1	205	88	115	21.7217
:ggggggguuuuuuuuuuuuggggggg	chr7:91747819-91748068(-)$1	249	14	41	19.0740
dddeeeeexxxxxxxxxxxxxxxeeee	chr2:186655989-186656234(-)$1	245	50	77	18.1914
eee^^^^^^^^^^^^^^^^^^^eeeee	chr6:168294450-168294705(+)$1	255	147	174	20.7338
eeee^^^^^^^^^^^^^^^^^^eeeee	chrM:8556-8759(+)$1	203	37	64	20.4509
ffffffxxxxxxxxxxxxxxxffffff	chr17:7416497-7416778(+)$1	281	134	161	17.5557
iii[ddddtttttttttttdddd]iii	chr19:39329553-39329833(-)$1	280	46	73	17.2006
g"""ddddvvvvvvvvvvvvvdddd66	chrM:9218-9431(+)$1	213	163	190	20.5545
b[ddddwwwwwwwwwwwwwwdddd22b	chrM:13516-13732(+)$1	216	37	64	20.9495
ffffffwwwwwwwwwwwwwwffffff8	chr13:96263601-96263939(-)$1	338	186	213	19.1442
eee[bbwwwwwwwwwwwwwwbb]eeee	chr5:34813513-34813803(+)$1	290	201	228	20.3813
^^^^^^^^^^^^^^^^^^^^eeeee22	chrM:13591-13795(+)$1	204	92	119	21.7217
========uuuuuuuuuuuu=======	chr2:172569105-172569407(+)$1	302	72	99	20.6736
%%%%%ddddtttttttttttdddd333	chr12:57114657-57114950(-)$1	293	186	213	17.1521
ffffffxxxxxxxxxxxxxxxffffff	chr2:186656034-186656287(-)$1	253	105	132	17.5557
ddd####bbtttttttttttbb4444d	chr19:49481290-49481656(-)$1	366	243	270	17.3494
C::eeeeeuuuuuuuuuuuueeeee:g	chr6:24472741-24473053(-)$1	312	140	167	17.8358
========uuuuuuuuuuuu=======	chr2:122202380-122202696(-)$1	316	80	107	20.6736
^^^^^^^^^^^^^^^^^^^^eeeee22	chrM:13600-13810(+)$1	210	83	110	21.7217
ccc!!cccuuuuuuuuuuuuccc22cc	chr1:62970341-62970686(-)$1	345	281	308	20.6126
eeeeddddvvvvvvvvvvvvvdddd]e	chr3:33870234-33870469(+)$1	235	126	153	20.6549
+++eeeeeuuuuuuuuuuuueeeee>>	chrM:7638-7840(+)$1	202	15	42	20.5346
eeee^^^^^^^^^^^^^^^^^^eeeee	chrM:8562-8767(+)$1	205	31	58	20.4509
ccc[dddduuuuuuuuuuuudddd]cc	chr9:19336651-19336913(+)$1	262	147	174	20.9214
c"""eeeeettttttttttteeeeecc	chr13:76101855-76102111(-)$1	256	200	227	18.5439
%%%%%ddddtttttttttttdddd333	chr12:57114583-57114843(-)$1	260	79	106	17.1521
ddd^^^^^^^^^^^^^^^^^^^^dddd	chr22:40676962-40677329(+)$1	367	339	366	19.6609
^^^^^^^^^^^^^^^^^^^^^ccc333	chrM:13610-13813(+)$1	203	122	149	21.8301
^^^^^^^^^^^^^^^^^^^^^ccc333	chrM:13613-13834(+)$1	221	119	146	21.8301
!ggggggguuuuuuuuuuuuggggggg	chr12:122973909-122974183(-)$1	274	120	147	19.9016
ddd!!bbxxxxxxxxxxxxxxxbb]dd	chr3:196803403-196803682(-)$1	279	246	273	17.7599
ee"""ddddtttttttttttdddd22e	chr1:28793098-28793361(+)$1	263	152	179	18.6091
ddd[dddduuuuuuuuuuuudddd333	chr12:98931297-98931549(+)$1	252	77	104	21.6333
dd^^^^^^^^^^^^^^^^^^ddddbbf	chr1:22416289-22416587(+)$1	298	91	118	19.5448
iiiiiiiixxxxxxxxxxxxxxxiiii	chr1:9816339-9816671(-)$1	332	160	187	17.5865
^^^^^^^^^^^^^^^^^^^^eeeee22	chrM:13577-13781(+)$1	204	106	133	21.7217
ee::dddduuuuuuuuuuuudddd:FF	chr2:153499873-153500121(+)$1	248	66	93	17.4430
eeeee[ccctttttttttttccceeee	chr15:57544466-57544736(+)$1	270	39	66	17.9694
^^^^^^^^^^^^^^^^^^^^^ccc333	chrM:13640-13847(+)$1	207	92	119	21.8301
b[ddddwwwwwwwwwwwwwwdddd]bb	chrX:47058059-47058310(+)$1	251	119	146	20.4936
ddd"""bbuuuuuuuuuuuubb22ddd	chr1:109816500-109816803(+)$1	303	254	281	19.0921
^^^^^^^^^^^^^^^^^^^^eeeee22	chrM:13573-13776(+)$1	203	110	137	21.7217
+++eeeeeuuuuuuuuuuuueeeee>>	chrM:7640-7842(+)$1	202	13	40	20.5346
ccceeeeeuuuuuuuuuuuueeeee44	chr6:128327001-128327344(-)$1	343	142	169	21.5891
gggggggvvvvvvvvvvvvvggggggg	chr2:179474059-179474346(+)$1	287	58	85	19.9052
eeeee^^^^^^^^^^^^^^^^^^eeee	chrM:8581-8795(+)$1	214	11	38	19.7403
b[ddddwwwwwwwwwwwwwwdddd22b	chrM:13532-13756(+)$1	224	21	48	20.9495
bbcccyyyyyyyyyyyyyyyyccc]bb	chrM:10967-11174(+)$1	207	1	28	20.0045
^^^^^^^^^^^^^^^^^^^^eeeee22	chrM:13581-13785(+)$1	204	102	129	21.7217
ccc[ddddwwwwwwwwwwwwwwdddd]	chr16:24801228-24801483(+)$1	255	184	211	20.4739
^^^^^^^^^^^^^^^^^^^^eeeee22	chrM:13566-13773(+)$1	207	117	144	21.7217
g"""ddddvvvvvvvvvvvvvdddd66	chrM:9231-9447(+)$1	216	150	177	20.5545
^^^^^^^^^^^^^^^^^^^^^ccc333	chrM:13634-13838(+)$1	204	98	125	21.8301
^^^^^^^^^^^^^^^^^^^^eeeee22	chrM:13585-13791(+)$1	206	98	125	21.7217
eeee^^^^^^^^^^^^^^^^^^eeeee	chrM:8559-8762(+)$1	203	34	61	20.4509

#otherMatches

#Seq PSSM
AUCAUUCUAUUUCCCCCUCUAUUGAUC	chrM:8567-8773(+)$1	206	26	53	20.4509
CCUACUAAACCCCAUUAAACGCCUGGC	chrM:13563-13766(+)$1	203	120	147	21.7217
CGCGAUGUAACACGAGAAAGCACAUAC	chrM:9251-9468(+)$1	217	130	157	20.5545
UGAAAGUUAUGUAAGUUUUUGAGACUU	chr12:32893065-32893347(-)$1	282	68	95	19.6075
CUAACACAGAAAUUAAAUAAUGUUAAC	chr6:87968214-87968511(+)$1	297	188	215	20.8181
AUUUUCCCUCAGAUAAAACUGGGAAGA	chr12:56717544-56717877(-)$1	333	168	195	19.8785
AUCAUUCUAUUUCCCCCUCUAUUGAUC	chrM:8573-8778(+)$1	205	20	47	20.4509
UCUGUUAAAUCUAUCCCCUCUUUAUUC	chr5:65364522-65364852(+)$1	330	153	180	18.0861
GACUGUGCCCUUUACUGCUCGCACCGC	chr2:153499794-153500073(+)$1	279	145	172	18.0147
GGUAUUUCCUAGUUUUUCUCAUGCCAU	chr10:97131047-97131348(-)$1	301	265	292	18.1452
CCUACUAAACCCCAUUAAACGCCUGGC	chrM:13595-13800(+)$1	205	88	115	21.7217
ACCAGUUACCUCUGUACUUUUAGCUGG	chr7:91747819-91748068(-)$1	249	14	41	19.0740
GUAGUGUUUCCCCAAUUCUUUCUAACA	chr2:186655989-186656234(-)$1	245	50	77	18.1914
CUUACUACUACUUUUAUAACUAAAGCA	chr6:168294450-168294705(+)$1	255	147	174	20.7338
AUCAUUCUAUUUCCCCCUCUAUUGAUC	chrM:8556-8759(+)$1	203	37	64	20.4509
uagcuacucgcccacuuccccuagcua	chr17:7416497-7416778(+)$1	281	134	161	17.5557
UUUCUAGUGGUCCCGAUUAACUGUGAG	chr19:39329553-39329833(-)$1	280	46	73	17.2006
CGCGAUGUAACACGAGAAAGCACAUAC	chrM:9218-9431(+)$1	213	163	190	20.5545
CCUGAGCCCUAUCUAUUACUCUCAUCG	chrM:13516-13732(+)$1	216	37	64	20.9495
UUGCAGAUUAAAGACUUUACCUGUAAU	chr13:96263601-96263939(-)$1	338	186	213	19.1442
GGAACUCCAAAAAAACGCAAAGCUCCA	chr5:34813513-34813803(+)$1	290	201	228	20.3813
CCUACUAAACCCCAUUAAACGCCUGGC	chrM:13591-13795(+)$1	204	92	119	21.7217
UGAAUAGUACUUUAGCUUUAGCUAUUC	chr2:172569105-172569407(+)$1	302	72	99	20.6736
CCAAAGACUAAUCUUAAUAAAGUUCCC	chr12:57114657-57114950(-)$1	293	186	213	17.1521
AGUGUUUCCCCAAUUCUUUCUAACACU	chr2:186656034-186656287(-)$1	253	105	132	17.5557
GACACGGCCAACACGGUGAAGGAAAAG	chr19:49481290-49481656(-)$1	366	243	270	17.3494
UAUGUUUGUCACUAAUCCACCAAAUGU	chr6:24472741-24473053(-)$1	312	140	167	17.8358
ACAUUCGGCUUUUUAAUUUUUUGAAUG	chr2:122202380-122202696(-)$1	316	80	107	20.6736
CCUACUAAACCCCAUUAAACGCCUGGC	chrM:13600-13810(+)$1	210	83	110	21.7217
UGCCUCAGGCUUCUCCGACACUGUAGC	chr1:62970341-62970686(-)$1	345	281	308	20.6126
UGGCUGCAAAGCACUGUAUCAUGCAGG	chr3:33870234-33870469(+)$1	235	126	153	20.6549
UUCAUGAUCACGCCCUCAUAAUCAUUU	chrM:7638-7840(+)$1	202	15	42	20.5346
AUCAUUCUAUUUCCCCCUCUAUUGAUC	chrM:8562-8767(+)$1	205	31	58	20.4509
GCUUGAGUCCAUUGAUAAUCACUCUAG	chr9:19336651-19336913(+)$1	262	147	174	20.9214
aucacgcaguauuagccuuucuguguc	chr13:76101855-76102111(-)$1	256	200	227	18.5439
CCAAAGACUAAUCUUAAUAAAGUUCCC	chr12:57114583-57114843(-)$1	260	79	106	17.1521
GCCUCUCAAAUUUAUAACUGCUUGGCU	chr22:40676962-40677329(+)$1	367	339	366	19.6609
UUUCUCAUUACUAACAACAUUUCCCCC	chrM:13610-13813(+)$1	203	122	149	21.8301
UUUCUCAUUACUAACAACAUUUCCCCC	chrM:13613-13834(+)$1	221	119	146	21.8301
AAACUGGUUAAAAAUUGGUUACCGGUU	chr12:122973909-122974183(-)$1	274	120	147	19.9016
GUCAACUGAAAAUAAAAUGGAGAGGGA	chr3:196803403-196803682(-)$1	279	246	273	17.7599
AGCUCACAGAAAUAGCAACCCUGUCAU	chr1:28793098-28793361(+)$1	263	152	179	18.6091
UGUACAGGUAUAAAUAACCUCCUGACA	chr12:98931297-98931549(+)$1	252	77	104	21.6333
UCUUUCUAAUCCUCUAACCUGGCUGCU	chr1:22416289-22416587(+)$1	298	91	118	19.5448
UAUGAAUAUUAACCCACUAACUUUGUU	chr1:9816339-9816671(-)$1	332	160	187	17.5865
CCUACUAAACCCCAUUAAACGCCUGGC	chrM:13577-13781(+)$1	204	106	133	21.7217
GACUGUGCCCUUUACUGCUCGCACCGC	chr2:153499873-153500121(+)$1	248	66	93	17.4430
GGCGUUAACUUUACUAACAUGUUAUGC	chr15:57544466-57544736(+)$1	270	39	66	17.9694
UUUCUCAUUACUAACAACAUUUCCCCC	chrM:13640-13847(+)$1	207	92	119	21.8301
CCUCUGACCUUUUUUUCCUCCAGAUGU	chrX:47058059-47058310(+)$1	251	119	146	20.4936
UGCCCCGCUCCCCAUCGCCUGCCCGCA	chr1:109816500-109816803(+)$1	303	254	281	19.0921
CCUACUAAACCCCAUUAAACGCCUGGC	chrM:13573-13776(+)$1	203	110	137	21.7217
UUCAUGAUCACGCCCUCAUAAUCAUUU	chrM:7640-7842(+)$1	202	13	40	20.5346
AGGAGGAGCUACUAUUCUUACUCCUAC	chr6:128327001-128327344(-)$1	343	142	169	21.5891
CACCCUUCCUUCUCCUAACCAAGGGUG	chr2:179474059-179474346(+)$1	287	58	85	19.9052
GAUCAUUCUAUUUCCCCCUCUAUUGAU	chrM:8581-8795(+)$1	214	11	38	19.7403
CCUGAGCCCUAUCUAUUACUCUCAUCG	chrM:13532-13756(+)$1	224	21	48	20.9495
CCUGACUCCUACCCCUCACAAUCAUGG	chrM:10967-11174(+)$1	207	1	28	20.0045
CCUACUAAACCCCAUUAAACGCCUGGC	chrM:13581-13785(+)$1	204	102	129	21.7217
CGUGUGAGCACAAUGAAUCAUCCUCAG	chr16:24801228-24801483(+)$1	255	184	211	20.4739
CCUACUAAACCCCAUUAAACGCCUGGC	chrM:13566-13773(+)$1	207	117	144	21.7217
CGCGAUGUAACACGAGAAAGCACAUAC	chrM:9231-9447(+)$1	216	150	177	20.5545
UUUCUCAUUACUAACAACAUUUCCCCC	chrM:13634-13838(+)$1	204	98	125	21.8301
CCUACUAAACCCCAUUAAACGCCUGGC	chrM:13585-13791(+)$1	206	98	125	21.7217
AUCAUUCUAUUUCCCCCUCUAUUGAUC	chrM:8559-8762(+)$1	203	34	61	20.4509

#DB
((((..................)))))	chrM:8567-8773(+)$1	1	26	53	20.4509
....................)))))..	chrM:13563-13766(+)$1	1	120	147	21.7217
(...((((.............))))..	chrM:9251-9468(+)$1	1	130	157	20.5545
((((((((..............)))))	chr12:32893065-32893347(-)$1	1	68	95	19.6075
.(((((..............)))))((	chr6:87968214-87968511(+)$1	1	188	215	20.8181
.(((((((............)))))))	chr12:56717544-56717877(-)$1	1	168	195	19.8785
((((..................)))))	chrM:8573-8778(+)$1	1	20	47	20.4509
((((.((((...........))))..)	chr5:65364522-65364852(+)$1	1	153	180	18.0861
))..((((............)))).((	chr2:153499794-153500073(+)$1	1	145	172	18.0147
(((((...............)))))..	chr10:97131047-97131348(-)$1	1	265	292	18.1452
....................)))))..	chrM:13595-13800(+)$1	1	88	115	21.7217
.(((((((............)))))))	chr7:91747819-91748068(-)$1	1	14	41	19.0740
((((((((...............))))	chr2:186655989-186656234(-)$1	1	50	77	18.1914
(((...................)))))	chr6:168294450-168294705(+)$1	1	147	174	20.7338
((((..................)))))	chrM:8556-8759(+)$1	1	37	64	20.4509
((((((...............))))))	chr17:7416497-7416778(+)$1	1	134	161	17.5557
(((.((((...........)))).)))	chr19:39329553-39329833(-)$1	1	46	73	17.2006
(...((((.............))))..	chrM:9218-9431(+)$1	1	163	190	20.5545
(.((((..............))))..)	chrM:13516-13732(+)$1	1	37	64	20.9495
((((((..............)))))).	chr13:96263601-96263939(-)$1	1	186	213	19.1442
(((.((..............)).))))	chr5:34813513-34813803(+)$1	1	201	228	20.3813
....................)))))..	chrM:13591-13795(+)$1	1	92	119	21.7217
((((((((............)))))))	chr2:172569105-172569407(+)$1	1	72	99	20.6736
.....((((...........))))...	chr12:57114657-57114950(-)$1	1	186	213	17.1521
((((((...............))))))	chr2:186656034-186656287(-)$1	1	105	132	17.5557
(((....((...........))....)	chr19:49481290-49481656(-)$1	1	243	270	17.3494
(..(((((............))))).(	chr6:24472741-24473053(-)$1	1	140	167	17.8358
((((((((............)))))))	chr2:122202380-122202696(-)$1	1	80	107	20.6736
....................)))))..	chrM:13600-13810(+)$1	1	83	110	21.7217
(((..(((............)))..))	chr1:62970341-62970686(-)$1	1	281	308	20.6126
((((((((.............)))).)	chr3:33870234-33870469(+)$1	1	126	153	20.6549
...(((((............)))))..	chrM:7638-7840(+)$1	1	15	42	20.5346
((((..................)))))	chrM:8562-8767(+)$1	1	31	58	20.4509
(((.((((............)))).))	chr9:19336651-19336913(+)$1	1	147	174	20.9214
(...(((((...........)))))))	chr13:76101855-76102111(-)$1	1	200	227	18.5439
.....((((...........))))...	chr12:57114583-57114843(-)$1	1	79	106	17.1521
(((....................))))	chr22:40676962-40677329(+)$1	1	339	366	19.6609
.....................)))...	chrM:13610-13813(+)$1	1	122	149	21.8301
.....................)))...	chrM:13613-13834(+)$1	1	119	146	21.8301
.(((((((............)))))))	chr12:122973909-122974183(-)$1	1	120	147	19.9016
(((..((...............)).))	chr3:196803403-196803682(-)$1	1	246	273	17.7599
((...((((...........))))..)	chr1:28793098-28793361(+)$1	1	152	179	18.6091
(((.((((............))))...	chr12:98931297-98931549(+)$1	1	77	104	21.6333
((..................))))))(	chr1:22416289-22416587(+)$1	1	91	118	19.5448
((((((((...............))))	chr1:9816339-9816671(-)$1	1	160	187	17.5865
....................)))))..	chrM:13577-13781(+)$1	1	106	133	21.7217
))..((((............)))).))	chr2:153499873-153500121(+)$1	1	66	93	17.4430
(((((.(((...........)))))))	chr15:57544466-57544736(+)$1	1	39	66	17.9694
.....................)))...	chrM:13640-13847(+)$1	1	92	119	21.8301
(.((((..............)))).))	chrX:47058059-47058310(+)$1	1	119	146	20.4936
(((...((............))..)))	chr1:109816500-109816803(+)$1	1	254	281	19.0921
....................)))))..	chrM:13573-13776(+)$1	1	110	137	21.7217
...(((((............)))))..	chrM:7640-7842(+)$1	1	13	40	20.5346
((((((((............)))))..	chr6:128327001-128327344(-)$1	1	142	169	21.5891
(((((((.............)))))))	chr2:179474059-179474346(+)$1	1	58	85	19.9052
(((((..................))))	chrM:8581-8795(+)$1	1	11	38	19.7403
(.((((..............))))..)	chrM:13532-13756(+)$1	1	21	48	20.9495
(((((................))).))	chrM:10967-11174(+)$1	1	1	28	20.0045
....................)))))..	chrM:13581-13785(+)$1	1	102	129	21.7217
(((.((((..............)))).	chr16:24801228-24801483(+)$1	1	184	211	20.4739
....................)))))..	chrM:13566-13773(+)$1	1	117	144	21.7217
(...((((.............))))..	chrM:9231-9447(+)$1	1	150	177	20.5545
.....................)))...	chrM:13634-13838(+)$1	1	98	125	21.8301
....................)))))..	chrM:13585-13791(+)$1	1	98	125	21.7217
((((..................)))))	chrM:8559-8762(+)$1	1	34	61	20.4509

#PSSM
e : 0.23	^ : 0.20	d : 0.10	c : 0.07	g : 0.06	b : 0.06	i : 0.04	f : 0.04	: : 0.03	= : 0.03	% : 0.03	+ : 0.03	# : 0.01	C : 0.01	! : 0.01	
e : 0.24	^ : 0.20	d : 0.10	" : 0.06	g : 0.06	c : 0.06	i : 0.04	f : 0.04	[ : 0.04	= : 0.03	% : 0.03	+ : 0.03	: : 0.01	b : 0.01	
^ : 0.21	e : 0.20	d : 0.13	" : 0.07	c : 0.07	g : 0.06	i : 0.04	: : 0.04	f : 0.04	= : 0.03	% : 0.03	+ : 0.03	
e : 0.24	^ : 0.24	" : 0.09	[ : 0.07	g : 0.06	f : 0.04	d : 0.04	i : 0.03	: : 0.03	= : 0.03	% : 0.03	! : 0.03	# : 0.01	c : 0.01	
^ : 0.32	d : 0.20	e : 0.15	g : 0.06	f : 0.04	i : 0.03	= : 0.03	% : 0.03	! : 0.03	" : 0.03	[ : 0.01	b : 0.01	# : 0.01	c : 0.01	
^ : 0.33	d : 0.26	e : 0.10	g : 0.06	f : 0.04	i : 0.03	b : 0.03	= : 0.03	x : 0.01	# : 0.01	c : 0.01	[ : 0.01	" : 0.01	y : 0.01	
^ : 0.33	d : 0.21	w : 0.09	e : 0.09	g : 0.06	x : 0.04	i : 0.03	= : 0.03	c : 0.03	b : 0.03	# : 0.01	y : 0.01	
^ : 0.33	d : 0.21	w : 0.09	e : 0.09	x : 0.06	g : 0.04	i : 0.03	= : 0.03	b : 0.03	c : 0.03	v : 0.01	y : 0.01	
^ : 0.33	u : 0.23	w : 0.12	x : 0.09	v : 0.07	d : 0.06	t : 0.01	b : 0.01	e : 0.01	c : 0.01	y : 0.01	
^ : 0.33	u : 0.23	w : 0.12	t : 0.12	x : 0.09	v : 0.07	y : 0.01	
^ : 0.33	u : 0.23	w : 0.12	t : 0.12	x : 0.09	v : 0.07	y : 0.01	
^ : 0.33	u : 0.23	w : 0.12	t : 0.12	x : 0.09	v : 0.07	y : 0.01	
^ : 0.33	u : 0.23	w : 0.12	t : 0.12	x : 0.09	v : 0.07	y : 0.01	
^ : 0.33	u : 0.23	w : 0.12	t : 0.12	x : 0.09	v : 0.07	y : 0.01	
^ : 0.33	u : 0.23	w : 0.12	t : 0.12	x : 0.09	v : 0.07	y : 0.01	
^ : 0.33	u : 0.23	w : 0.12	t : 0.12	x : 0.09	v : 0.07	y : 0.01	
^ : 0.33	u : 0.23	w : 0.12	t : 0.12	x : 0.09	v : 0.07	y : 0.01	
^ : 0.33	u : 0.23	w : 0.12	t : 0.12	x : 0.09	v : 0.07	y : 0.01	
^ : 0.33	u : 0.23	w : 0.12	t : 0.12	x : 0.09	v : 0.07	y : 0.01	
^ : 0.33	u : 0.23	w : 0.12	t : 0.10	x : 0.09	v : 0.07	d : 0.01	y : 0.01	
e : 0.24	d : 0.20	^ : 0.18	x : 0.07	v : 0.06	g : 0.06	b : 0.04	w : 0.03	= : 0.03	c : 0.03	f : 0.01	y : 0.01	
d : 0.26	e : 0.24	^ : 0.12	c : 0.10	g : 0.06	x : 0.04	f : 0.04	b : 0.04	w : 0.03	= : 0.03	
e : 0.33	d : 0.27	c : 0.10	g : 0.06	f : 0.04	x : 0.03	= : 0.03	^ : 0.03	i : 0.01	] : 0.01	4 : 0.01	b : 0.01	2 : 0.01	
e : 0.40	d : 0.27	c : 0.07	g : 0.06	f : 0.04	i : 0.03	= : 0.03	2 : 0.03	] : 0.01	4 : 0.01	b : 0.01	
e : 0.40	d : 0.10	3 : 0.10	2 : 0.07	g : 0.06	] : 0.06	i : 0.04	f : 0.04	: : 0.03	= : 0.03	4 : 0.01	b : 0.01	
2 : 0.20	e : 0.15	3 : 0.10	d : 0.07	c : 0.06	g : 0.06	6 : 0.04	i : 0.04	f : 0.04	b : 0.04	: : 0.03	= : 0.03	4 : 0.03	> : 0.03	] : 0.01	F : 0.01	
e : 0.20	2 : 0.13	3 : 0.10	g : 0.07	d : 0.07	c : 0.06	b : 0.06	6 : 0.04	i : 0.04	f : 0.04	= : 0.03	> : 0.03	: : 0.01	8 : 0.01	F : 0.01	4 : 0.01	] : 0.01	

#score	1297.068275795927
#seq	65
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_transcript_m1_run1.txt

#BEAR
occcccc!!ddddoooooodddd4444ccc	chr9:110045502-110045772(+)$1	270	172	202	14.9649
e[bb!!ccc[cccooooooccc]cccbb]e	chr19:39138360-39138649(+)$1	289	69	99	15.1583
fff[bb"""ddddoooooodddd333bb]f	chr2:216256360-216256586(-)$1	226	146	176	14.6317
ggggdddd!!cccooooooccc22dddd::	chr3:58129163-58129407(+)$1	244	82	112	13.7041
=============oooooo===========	chr1:9883603-9883844(-)$1	241	202	232	15.0505
ccc"""ccc!!cccnnnnnccc333ccc]c	chr12:99038268-99038562(-)$1	294	80	110	12.4728
:============oooooo===========	chr10:131565071-131565358(+)$1	287	98	128	14.1692
c[a[eeeeeddddoooooodddd22eeeee	chr1:183095157-183095429(+)$1	272	197	227	13.9354
FFffffff!!cccooooooccc22ffffff	chr3:133489311-133489516(+)$1	205	66	96	14.5947
fff!!a[ffffffooooooffffff]a22f	chr17:47482309-47482657(-)$1	348	308	338	13.1926
::eeeee!!ddddoooooodddd22eeeee	chr12:9251926-9252138(-)$1	212	164	194	12.4469
ggggg[ccc[cccnnnnnccccccgggggg	chr12:57574088-57574354(+)$1	266	218	248	11.2767
!!ffffff!!cccooooooccc22ffffff	chr6:160448124-160448382(+)$1	258	180	210	15.4791
ddd!!bbccccccooooooccc]ccc]bb3	chr2:101924837-101925103(-)$1	266	190	220	14.5978
ggggg!!ccc!!aooooooa22ccc4444g	chr20:31606473-31606706(+)$1	233	127	157	14.5920
ddd[dddd"""bboooooobb22dddd]dd	chr15:64448036-64448309(-)$1	273	65	95	12.8324
bffffff"""cccooooooccc]ffffff:	chr17:42429937-42430182(+)$1	245	181	211	13.8169
""ffffff!!cccooooooccc22ffffff	chr2:216285307-216285553(-)$1	246	91	121	15.3090
$$dddd!!eeeeeooooooeeeeedddd33	chr11:62655506-62655735(+)$1	229	133	163	12.0641
eeee!!dddd!!aooooooa22ddddeeee	chr19:579424-579684(+)$1	260	133	163	12.8163
dd$$$$$ffffffooooooffffff333dd	chr14:94780821-94781070(-)$1	249	109	139	12.5939
gggg[a[ffffffooooooffffff]a333	chr9:124064140-124064546(+)$1	406	302	332	14.0562
ggggg!!bb[cccoooooocccbb]ggggg	chr2:10952760-10953009(-)$1	249	68	98	14.9006
cc[ccc!!a[cccooooooccc]a22cccc	chr16:2293033-2293319(-)$1	286	253	283	16.2712
eecccccc[ddddoooooodddd]ccc]cc	chr12:53292189-53292403(-)$1	214	35	65	14.7561
ff!!dddd"""bboooooobb4444dddd2	chr4:74274254-74274489(+)$1	235	11	41	13.6768
dddd[eeeeecccooooooccc333eeeee	chr8:143808887-143809234(+)$1	347	114	144	15.0141
ggggg!!cccrrrrrrrrrccc333ggggg	chr1:55523009-55523229(+)$1	220	174	204	11.4370
g[ccc[ccc[cccoooooocccccc]cccg	chrX:153589603-153589843(-)$1	240	60	90	16.2308
c[eeeee"""ddddooooooddddeeeee]	chr17:19437131-19437431(+)$1	300	2	32	12.4887
eecccccc!!cccnnnnnccc333ccc]cc	chr2:88427397-88427665(-)$1	268	136	166	12.0133
eeee[bbccccccooooooccc]ccc]bb]	chr17:80049427-80049658(-)$1	231	51	81	14.4962
ggg[cccdddd[aooooooa]dddd]ccc2	chr16:2301262-2301531(-)$1	269	138	168	13.9371
::ccc[cccddddoooooodddd22ccc]c	chr11:125481241-125481510(+)$1	269	236	266	13.1709
eeeee!!ccc[bboooooobbccc22eeee	chr8:11705175-11705432(-)$1	257	160	190	13.9493
gggggg####cccooooooccc22gggggg	chr4:3520496-3520819(-)$1	323	89	119	16.5204
eeeee####ddddoooooodddd333eeee	chr14:95047672-95047907(+)$1	235	203	233	15.3696
[bb"""ddddcccooooooccc22dddd]b	chr11:118917173-118917408(-)$1	235	67	97	14.5089
f[accc[ccc[bboooooobbccc22ccc]	chr17:26646169-26646487(+)$1	318	196	226	14.3248
ggg[ccca[ddddoooooodddd]a]cccg	chr1:23885688-23885982(-)$1	294	104	134	15.2380
ddd[eeeee[cccooooooccc22eeeee]	chr1:8923242-8923463(-)$1	221	168	198	15.0970
###ccc[a!!cccooooooccc22a]ccc2	chr2:216269125-216269341(-)$1	216	140	170	16.5976
ddd"""gggggggoooooogggggggdddd	chr17:80196510-80196755(+)$1	245	156	186	13.6647
eee[ccc"""ddddnnnnndddd333ccc]	chr4:74285204-74285432(+)$1	228	132	162	11.6306
[eeeee[ffffffooooooffffff333ee	chr1:120286408-120286667(+)$1	259	128	158	13.4904
b[ccc[ccc!!bboooooobb22ccc]ccc	chr6:30691238-30691498(+)$1	260	60	90	14.2930
ffff"""ffffffooooooffffff333ff	chr9:101990087-101990343(+)$1	256	127	157	13.7241
ccc!!dddd[cccooooooccc]ddddccc	chr14:24662268-24662526(-)$1	258	188	218	15.0033
[dddd"""a[cccooooooccc]a4444dd	chr2:20646768-20647125(+)$1	357	127	157	16.0619
eee####ffffffooooooffffff333ee	chr3:186337569-186337794(+)$1	225	27	57	13.9257
ggggggg!!ddddooooooddddggggggg	chr7:40173895-40174141(-)$1	246	3	33	14.6918
###ccc"""ddddoooooodddd]ccc444	chr1:156107347-156107592(+)$1	245	62	92	15.0113
:dddd[bb!!cccooooooccc22bbdddd	chr15:44085868-44086145(+)$1	277	184	214	13.6848

#otherMatches

#Seq PSSM
GCACGGCGGCCCGAGUUCGCGGGGAAGGCC	chr9:110045502-110045772(+)$1	270	172	202	14.9649
CAGCAGCGCGGGCAAUGGCGCUGGCGGCGG	chr19:39138360-39138649(+)$1	289	69	99	15.1583
CCUGGUGCGUUACUCACCUGUGAAAAAUGA	chr2:216256360-216256586(-)$1	226	146	176	14.6317
GGACAACAAGGACGGCACGGUCACUGUUAG	chr3:58129163-58129407(+)$1	244	82	112	13.7041
ggauucgggucccggugcggggauucgggu	chr1:9883603-9883844(-)$1	241	202	232	15.0505
GACAUGUCUGAGGUGAAGAGCCGGAAGAAG	chr12:99038268-99038562(-)$1	294	80	110	12.4728
AGCCAGGCUUGGGAGGGAGCUCAGGUCUGG	chr10:131565071-131565358(+)$1	287	98	128	14.1692
UGUGAGGUCAACCACUUUGGGUUUGGACCU	chr1:183095157-183095429(+)$1	272	197	227	13.9354
CCUUUGUGAAACACCAGACUGUCCCACAGA	chr3:133489311-133489516(+)$1	205	66	96	14.5947
CCACCCUGCCUGCACCUCCGCGGGCUGACU	chr17:47482309-47482657(-)$1	348	308	338	13.1926
GUGuguuuuagaucauaaaaucuucaacau	chr12:9251926-9252138(-)$1	212	164	194	12.4469
GCCAGACCUACUGGGAGACAGGGGCUGGCU	chr12:57574088-57574354(+)$1	266	218	248	11.2767
UGGCCAGCCCCGGGACGGACUGAAGCUGGU	chr6:160448124-160448382(+)$1	258	180	210	15.4791
CGUGGACCCGCAGACCAACCUGACGGUGUG	chr2:101924837-101925103(-)$1	266	190	220	14.5978
CCUCAACCUGGACAUCACAGGGCAGCUGGU	chr20:31606473-31606706(+)$1	233	127	157	14.5920
CCUUUGCCAUCGCCAAGGAGUAGGGCACAG	chr15:64448036-64448309(-)$1	273	65	95	12.8324
CGCUGGGACGCCCCUUUGAGGGACCCAGCC	chr17:42429937-42430182(+)$1	245	181	211	13.8169
GAGGGGCACAUGCUGAACUGUACAUGCUUC	chr2:216285307-216285553(-)$1	246	91	121	15.3090
UCCAGCUUCCCUGACAUCCCAGGGGCUGUA	chr11:62655506-62655735(+)$1	229	133	163	12.0641
CUUGAAUGACAGCGCCACAGAGGUCACAGG	chr19:579424-579684(+)$1	260	133	163	12.8163
CUUCUCUGGCUGCCCACCAGCGGCCUCUGG	chr14:94780821-94781070(-)$1	249	109	139	12.5939
UGGGUGAGGCUGGCCCUGCCCAGCCCCUGC	chr9:124064140-124064546(+)$1	406	302	332	14.0562
gccccUCGGACCACCGGACUGGCCUGGGGC	chr2:10952760-10953009(-)$1	249	68	98	14.9006
CCAGUGGAUGGCCAUUCCAGGUGAGGCACG	chr16:2293033-2293319(-)$1	286	253	283	16.2712
GUCCUGUUGUUCUGGGCCAAGAAGGGCUAG	chr12:53292189-53292403(-)$1	214	35	65	14.7561
AAAAAGGUACUGUCCAGCAACUGAAACCUG	chr4:74274254-74274489(+)$1	235	11	41	13.6768
GCGCACCUGACCCGCUGCGGGGUGCUCGGG	chr8:143808887-143809234(+)$1	347	114	144	15.0141
GCUGGUAAGUCACCACCCCACUGCCUCGGC	chr1:55523009-55523229(+)$1	220	174	204	11.4370
CUGCCCCGUGAGGAAGGGCCCUAUGAGGUG	chrX:153589603-153589843(-)$1	240	60	90	16.2308
ggACUGCAGAGCAGGCUGCACUGCGCGGUA	chr17:19437131-19437431(+)$1	300	2	32	12.4887
UCUCCGGCAAGUACCAACUGCAGAGCCAGG	chr2:88427397-88427665(-)$1	268	136	166	12.0133
UGGUAGAGGGAGUGGGGCGGCUGCCCAUCC	chr17:80049427-80049658(-)$1	231	51	81	14.4962
gcgggcggccggcggcggagacggcgcgcg	chr16:2301262-2301531(-)$1	269	138	168	13.9371
UGGCAGAAUUCAGAAAGUACUGAUGAUUGU	chr11:125481241-125481510(+)$1	269	236	266	13.1709
UGCACGGGGGAGGGAGAUACCCCCAAGUGU	chr8:11705175-11705432(-)$1	257	160	190	13.9493
UUUCCCUCUUAGGCGAAGACCUCUGGGAAA	chr4:3520496-3520819(-)$1	323	89	119	16.5204
GAGGCGAGGAGAGGAUGGACUCUAGAGUUU	chr14:95047672-95047907(+)$1	235	203	233	15.3696
GACCCGGGCAGAGCCACCCCUCAAUGCCAG	chr11:118917173-118917408(-)$1	235	67	97	14.5089
UGCCGCGCGAGCUCUACCCAGUCGAGGUGA	chr17:26646169-26646487(+)$1	318	196	226	14.3248
GUGUGCUGCCUGUCGGAACGCAGUCUGGCC	chr1:23885688-23885982(-)$1	294	104	134	15.2380
AGGUAAGAAUGAGCGUCUCCUCCUUUCUUC	chr1:8923242-8923463(-)$1	221	168	198	15.0970
AUCUGCAGCCUGCAUCUGAGUACACCGUAU	chr2:216269125-216269341(-)$1	216	140	170	16.5976
GGCAACUUCUUCUGCAUUAGGAAGAAGCCC	chr17:80196510-80196755(+)$1	245	156	186	13.6647
AGACCUGCUUUGCCGAGGAGGUACUACAGU	chr4:74285204-74285432(+)$1	228	132	162	11.6306
GCUGUCCUACCAGACUUCACUGGUGUCAGA	chr1:120286408-120286667(+)$1	259	128	158	13.4904
AAGAUCCGAGAAGAAUACCCUGAUCGCAUC	chr6:30691238-30691498(+)$1	260	60	90	14.2930
CGCACAACCUCGGCAGGCACCGGGGGGAUG	chr9:101990087-101990343(+)$1	256	127	157	13.7241
CCAUUUGGACUUCCACCUAGAAUUCCAUGG	chr14:24662268-24662526(-)$1	258	188	218	15.0033
CCGGGAGAGAGCUAGGCCGAGUCCACCGCC	chr2:20646768-20647125(+)$1	357	127	157	16.0619
GAUCCAUUUUUGAAAUUAGUUAAAAUAAAU	chr3:186337569-186337794(+)$1	225	27	57	13.9257
CUCCUCCUUACCCUGGUCCGGGUGGAGGAG	chr7:40173895-40174141(-)$1	246	3	33	14.6918
CCUGACCCUUGGACCUGGUUCCAUGUCCCC	chr1:156107347-156107592(+)$1	245	62	92	15.0113
AGUGCUCACAGGUCCCAGCACCGAUGGCAU	chr15:44085868-44086145(+)$1	277	184	214	13.6848

#DB
.)))(((..((((......))))....)))	chr9:110045502-110045772(+)$1	1	172	202	14.9649
(.((..(((.(((......))).))))).)	chr19:39138360-39138649(+)$1	1	69	99	15.1583
(((.((...((((......))))...)).)	chr2:216256360-216256586(-)$1	1	146	176	14.6317
))))((((..(((......)))..))))..	chr3:58129163-58129407(+)$1	1	82	112	13.7041
(((((((((((((......)))))))))))	chr1:9883603-9883844(-)$1	1	202	232	15.0505
(((...(((..(((.....)))...))).)	chr12:99038268-99038562(-)$1	1	80	110	12.4728
.((((((((((((......)))))))))))	chr10:131565071-131565358(+)$1	1	98	128	14.1692
(.(.(((((((((......))))..)))))	chr1:183095157-183095429(+)$1	1	197	227	13.9354
((((((((..(((......)))..))))))	chr3:133489311-133489516(+)$1	1	66	96	14.5947
(((..(.((((((......)))))).)..)	chr17:47482309-47482657(-)$1	1	308	338	13.1926
..(((((..((((......))))..)))))	chr12:9251926-9252138(-)$1	1	164	194	12.4469
(((((.(((.(((.....))))))))))))	chr12:57574088-57574354(+)$1	1	218	248	11.2767
..((((((..(((......)))..))))))	chr6:160448124-160448382(+)$1	1	180	210	15.4791
(((..((((((((......))).))).)).	chr2:101924837-101925103(-)$1	1	190	220	14.5978
(((((..(((..(......)..)))....)	chr20:31606473-31606706(+)$1	1	127	157	14.5920
(((.((((...((......))..)))).))	chr15:64448036-64448309(-)$1	1	65	95	12.8324
)((((((...(((......))).)))))).	chr17:42429937-42430182(+)$1	1	181	211	13.8169
..((((((..(((......)))..))))))	chr2:216285307-216285553(-)$1	1	91	121	15.3090
..((((..(((((......)))))))))..	chr11:62655506-62655735(+)$1	1	133	163	12.0641
((((..((((..(......)..))))))))	chr19:579424-579684(+)$1	1	133	163	12.8163
((.....((((((......))))))...))	chr14:94780821-94781070(-)$1	1	109	139	12.5939
((((.(.((((((......)))))).)...	chr9:124064140-124064546(+)$1	1	302	332	14.0562
(((((..((.(((......))))).)))))	chr2:10952760-10953009(-)$1	1	68	98	14.9006
((.(((..(.(((......))).)..))))	chr16:2293033-2293319(-)$1	1	253	283	16.2712
))((((((.((((......)))).))).))	chr12:53292189-53292403(-)$1	1	35	65	14.7561
((..((((...((......))....)))).	chr4:74274254-74274489(+)$1	1	11	41	13.6768
((((.((((((((......)))...)))))	chr8:143808887-143809234(+)$1	1	114	144	15.0141
(((((..(((.........)))...)))))	chr1:55523009-55523229(+)$1	1	174	204	11.4370
(.(((.(((.(((......)))))).))))	chrX:153589603-153589843(-)$1	1	60	90	16.2308
(.(((((...((((......))))))))).	chr17:19437131-19437431(+)$1	1	2	32	12.4887
((((((((..(((.....)))...))).))	chr2:88427397-88427665(-)$1	1	136	166	12.0133
((((.((((((((......))).))).)).	chr17:80049427-80049658(-)$1	1	51	81	14.4962
(((.(((((((.(......).)))).))).	chr16:2301262-2301531(-)$1	1	138	168	13.9371
..(((.(((((((......))))..))).)	chr11:125481241-125481510(+)$1	1	236	266	13.1709
(((((..(((.((......)))))..))))	chr8:11705175-11705432(-)$1	1	160	190	13.9493
((((((....(((......)))..))))))	chr4:3520496-3520819(-)$1	1	89	119	16.5204
(((((....((((......))))...))))	chr14:95047672-95047907(+)$1	1	203	233	15.3696
.((...(((((((......)))..)))).)	chr11:118917173-118917408(-)$1	1	67	97	14.5089
(.((((.(((.((......)))))..))).	chr17:26646169-26646487(+)$1	1	196	226	14.3248
(((.((((.((((......)))).).))))	chr1:23885688-23885982(-)$1	1	104	134	15.2380
(((.(((((.(((......)))..))))).	chr1:8923242-8923463(-)$1	1	168	198	15.0970
...(((.(..(((......)))..).))).	chr2:216269125-216269341(-)$1	1	140	170	16.5976
(((...(((((((......)))))))))))	chr17:80196510-80196755(+)$1	1	156	186	13.6647
(((.(((...((((.....))))...))).	chr4:74285204-74285432(+)$1	1	132	162	11.6306
.(((((.((((((......))))))...))	chr1:120286408-120286667(+)$1	1	128	158	13.4904
(.(((.(((..((......))..))).)))	chr6:30691238-30691498(+)$1	1	60	90	14.2930
((((...((((((......))))))...))	chr9:101990087-101990343(+)$1	1	127	157	13.7241
(((..((((.(((......))).)))))))	chr14:24662268-24662526(-)$1	1	188	218	15.0033
.((((...(.(((......))).)....))	chr2:20646768-20647125(+)$1	1	127	157	16.0619
(((....((((((......))))))...))	chr3:186337569-186337794(+)$1	1	27	57	13.9257
(((((((..((((......)))))))))))	chr7:40173895-40174141(-)$1	1	3	33	14.6918
...(((...((((......)))).)))...	chr1:156107347-156107592(+)$1	1	62	92	15.0113
.((((.((..(((......)))..))))))	chr15:44085868-44086145(+)$1	1	184	214	13.6848

#PSSM
g : 0.20	e : 0.16	d : 0.11	f : 0.09	c : 0.09	: : 0.07	[ : 0.05	b : 0.03	# : 0.03	o : 0.01	= : 0.01	F : 0.01	! : 0.01	" : 0.01	$ : 0.01	
g : 0.18	e : 0.16	d : 0.15	[ : 0.11	f : 0.09	c : 0.07	= : 0.03	: : 0.03	# : 0.03	F : 0.01	! : 0.01	" : 0.01	$ : 0.01	b : 0.01	
g : 0.18	e : 0.16	c : 0.15	d : 0.15	f : 0.13	b : 0.03	= : 0.03	a : 0.03	# : 0.03	$ : 0.01	[ : 0.01	! : 0.01	
c : 0.18	g : 0.15	[ : 0.13	e : 0.13	f : 0.09	! : 0.07	d : 0.07	" : 0.05	= : 0.03	b : 0.01	$ : 0.01	# : 0.01	
c : 0.24	e : 0.13	d : 0.11	g : 0.11	! : 0.09	" : 0.07	f : 0.07	[ : 0.05	= : 0.03	b : 0.01	$ : 0.01	# : 0.01	
c : 0.18	! : 0.11	e : 0.11	d : 0.09	" : 0.09	[ : 0.09	f : 0.07	b : 0.05	= : 0.03	a : 0.03	g : 0.03	# : 0.03	$ : 0.01	
c : 0.22	d : 0.11	! : 0.11	e : 0.09	[ : 0.09	" : 0.07	f : 0.07	b : 0.05	# : 0.05	= : 0.03	g : 0.03	$ : 0.01	
c : 0.26	f : 0.16	d : 0.13	" : 0.11	! : 0.09	e : 0.05	= : 0.03	b : 0.03	# : 0.03	a : 0.03	g : 0.01	
c : 0.22	! : 0.18	" : 0.13	f : 0.11	e : 0.07	d : 0.07	= : 0.03	a : 0.03	[ : 0.03	# : 0.03	b : 0.01	g : 0.01	
d : 0.24	! : 0.16	[ : 0.15	f : 0.11	c : 0.11	" : 0.09	= : 0.03	e : 0.03	# : 0.01	g : 0.01	
c : 0.39	d : 0.24	f : 0.11	! : 0.07	= : 0.03	" : 0.03	[ : 0.03	e : 0.01	r : 0.01	g : 0.01	
c : 0.41	d : 0.22	f : 0.11	b : 0.09	= : 0.03	! : 0.03	e : 0.01	r : 0.01	[ : 0.01	g : 0.01	
c : 0.41	d : 0.22	f : 0.11	b : 0.09	a : 0.05	= : 0.03	e : 0.01	r : 0.01	g : 0.01	
o : 0.88	n : 0.03	d : 0.03	c : 0.01	r : 0.01	
o : 0.90	n : 0.07	r : 0.01	
o : 0.90	n : 0.07	r : 0.01	
o : 0.90	n : 0.07	r : 0.01	
o : 0.90	n : 0.07	r : 0.01	
o : 0.90	n : 0.03	c : 0.03	r : 0.01	
c : 0.43	d : 0.20	f : 0.11	b : 0.09	a : 0.05	= : 0.03	e : 0.01	o : 0.01	g : 0.01	
c : 0.43	d : 0.22	f : 0.11	b : 0.09	= : 0.03	2 : 0.03	e : 0.01	] : 0.01	g : 0.01	
c : 0.45	d : 0.24	f : 0.11	2 : 0.07	= : 0.03	e : 0.01	4 : 0.01	3 : 0.01	g : 0.01	
d : 0.26	2 : 0.20	] : 0.13	f : 0.11	c : 0.09	3 : 0.07	= : 0.03	e : 0.01	b : 0.01	4 : 0.01	g : 0.01	
2 : 0.22	c : 0.16	3 : 0.13	f : 0.13	d : 0.09	] : 0.05	4 : 0.03	= : 0.03	a : 0.03	g : 0.03	e : 0.01	b : 0.01	
f : 0.18	c : 0.16	d : 0.13	3 : 0.11	2 : 0.11	g : 0.07	4 : 0.05	= : 0.03	e : 0.03	a : 0.03	] : 0.01	b : 0.01	
c : 0.16	3 : 0.13	d : 0.13	] : 0.11	g : 0.11	e : 0.09	f : 0.07	4 : 0.05	2 : 0.05	= : 0.03	b : 0.01	
c : 0.22	d : 0.15	e : 0.15	g : 0.09	f : 0.07	3 : 0.07	4 : 0.05	] : 0.05	b : 0.03	= : 0.03	a : 0.03	
c : 0.22	e : 0.15	d : 0.11	g : 0.09	3 : 0.09	b : 0.07	f : 0.07	4 : 0.05	] : 0.05	= : 0.03	2 : 0.01	
c : 0.22	e : 0.18	d : 0.11	] : 0.09	f : 0.09	g : 0.09	= : 0.03	b : 0.03	4 : 0.03	3 : 0.03	: : 0.01	2 : 0.01	
e : 0.16	c : 0.15	g : 0.15	f : 0.11	d : 0.09	] : 0.09	3 : 0.05	2 : 0.05	: : 0.03	= : 0.03	b : 0.01	4 : 0.01	

#score	748.9381379299341
#seq	53
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_transcript_m1_run1.txt

#BEAR
=[ccc[ddddtttttttttttdddd22	chr13:111545074-111545411(-)$1	337	63	90	22.5780
iiiiiiiiitttttttttttiiiiiii	chr6:99848025-99848293(-)$1	268	54	81	23.4617
[ccc[ddddtttttttttttdddd]cc	chr6:24780825-24781076(+)$1	251	152	179	22.7218
ggg[eeeeexxxxxxxxxxxxxxxeee	chr19:28918332-28918625(-)$1	293	31	58	19.1641
""dddd!!bbtttttttttttbb22dd	chr4:2930080-2930394(+)$1	314	253	280	21.5072
=========uuuuuuuuuuuu======	chr1:109642853-109643057(+)$1	204	72	99	25.9556
d"""eeeeettttttttttteeeee33	chr8:30945292-30945537(+)$1	245	69	96	23.0543
ggggg[cccuuuuuuuuuuuuccc]gg	chr7:127975841-127976150(-)$1	309	242	269	25.2329
[gggggggxxxxxxxxxxxxxxxgggg	chr1:161183942-161184236(+)$1	294	40	67	19.9287
dd!!eeeeeuuuuuuuuuuuueeeee2	chr7:91708445-91708751(+)$1	306	92	119	24.2083
=========uuuuuuuuuuuu======	chr1:109642814-109643022(+)$1	208	111	138	25.9556
ggggg!!ccctttttttttttccc22g	chr9:100774624-100774854(+)$1	230	72	99	23.3619
====eeeeeuuuuuuuuuuuueeeee:	chr6:99849282-99849547(-)$1	265	183	210	23.8049
=========uuuuuuuuuuuu======	chr1:109642841-109643053(+)$1	212	84	111	25.9556
'ccc!!ccctttttttttttccc22cc	chr15:66791638-66791889(-)$1	251	61	88	22.6494
ddd!!cccyyyyyyyyyyyyyyyyccc	chr9:127998783-127999061(-)$1	278	238	265	22.9102
!!eeeeexxxxxxxxxxxxxxxeeeee	chr15:69072327-69072582(-)$1	255	163	190	18.9719
=========uuuuuuuuuuuu======	chr1:109642831-109643037(+)$1	206	94	121	25.9556
=========uuuuuuuuuuuu======	chr1:109642824-109643031(+)$1	207	101	128	25.9556
[eeeee!!bbtttttttttttbb4444	chr12:104340345-104340573(+)$1	228	111	138	22.3454
dd[bbeeeeettttttttttteeeee2	chr9:134016206-134016456(+)$1	250	175	202	21.8716
[a[bb[ccctttttttttttccc]bb]	chr9:100774602-100774807(+)$1	205	137	164	22.7469
eee[eeeeeuuuuuuuuuuuueeeee]	chr17:73664515-73664809(+)$1	294	226	253	24.2496
hhhhhhh[auuuuuuuuuuuuahhhhh	chr7:148514851-148515175(-)$1	324	207	234	22.9304
eee!!dddduuuuuuuuuuuudddd77	chr1:52305957-52306232(-)$1	275	85	112	22.8424
=========vvvvvvvvvvvvv=====	chr1:24975313-24975568(+)$1	255	73	100	24.8404
$bb!!ddddwwwwwwwwwwwwwwdddd	chr11:65272066-65272280(+)$1	214	101	128	22.2530
!!bb!!cccwwwwwwwwwwwwwwccc2	chr9:131456218-131456421(+)$1	203	91	118	23.4724
hhhh[dddduuuuuuuuuuuudddd]h	chr17:34171852-34172137(+)$1	285	188	215	23.6259
eeee[dddduuuuuuuuuuuudddd]e	chr2:170668204-170668463(+)$1	259	69	96	23.8274
!!bb!!cccwwwwwwwwwwwwwwccc2	chr9:131456193-131456418(+)$1	225	116	143	23.4724
iiiiiiiiyyyyyyyyyyyyyyyyiii	chr15:40488685-40489029(+)$1	344	44	71	24.1394
[gggggggvvvvvvvvvvvvvgggggg	chr11:110101146-110101465(-)$1	319	12	39	23.7783
=========uuuuuuuuuuuu======	chr1:109642859-109643079(+)$1	220	66	93	25.9556
b"""bbyyyyyyyyyyyyyyyybb333	chr9:100777601-100777856(+)$1	255	93	120	22.0291
[eeeee[bbwwwwwwwwwwwwwwbb]e	chr1:11083388-11083678(+)$1	290	145	172	22.1052
bhhhhhhhhvvvvvvvvvvvvvhhhhh	chr12:95879554-95879797(+)$1	243	49	76	21.2228
[dddd!!bbuuuuuuuuuuuubb22dd	chr5:177019211-177019501(+)$1	290	190	217	23.0664
h"""cccwwwwwwwwwwwwwwccc333	chr14:102449685-102449999(+)$1	314	113	140	22.9780
eeee[dddduuuuuuuuuuuudddd]e	chr2:170668076-170668357(+)$1	281	197	224	23.8274
e[bb!!ddddtttttttttttdddd22	chr16:2809473-2809722(+)$1	249	80	107	22.2332
bb[bb[bbvvvvvvvvvvvvvbb]bb]	chr7:23545677-23545948(-)$1	271	86	113	21.3180
!!gggggggtttttttttttggggggg	chr11:9461947-9462255(+)$1	308	20	47	23.3345
Bffffffwwwwwwwwwwwwwwffffff	chr2:233697466-233697806(+)$1	340	163	190	19.9303
""gggggggyyyyyyyyyyyyyyyygg	chr12:53865370-53865612(+)$1	242	191	218	23.4314
:gggggggvvvvvvvvvvvvvgggggg	chr11:32610123-32610390(+)$1	267	2	29	22.6056
cc!!eeeeevvvvvvvvvvvvveeeee	chr7:139060731-139060974(+)$1	243	45	72	23.3198
ffffeeeeeuuuuuuuuuuuueeeee]	chr9:90342838-90343132(+)$1	294	54	81	23.8650
=========uuuuuuuuuuuu======	chr1:109642879-109643097(+)$1	218	46	73	25.9556
fffff[cccxxxxxxxxxxxxxxxccc	chr12:42707397-42707669(-)$1	272	12	39	18.5833
a!!eeeeeyyyyyyyyyyyyyyyyeee	chr11:65211465-65211793(+)$1	328	21	48	23.2147
:ccc!!ccctttttttttttccc22cc	chr1:28907503-28907779(-)$1	276	191	218	22.2267
$bb!!ddddwwwwwwwwwwwwwwdddd	chr11:65272056-65272266(+)$1	210	111	138	22.2530
c[gggggggtttttttttttggggggg	chr1:246349907-246350290(-)$1	383	70	97	23.0517

#otherMatches

#Seq PSSM
GCACACUUAUUUUUCCUUUCUGUAAUA	chr13:111545074-111545411(-)$1	337	63	90	22.5780
aauuuaaaauacauuuuuauuuuuaaa	chr6:99848025-99848293(-)$1	268	54	81	23.4617
AUAUGGCUAAAAUGGGGUACUGGUGAU	chr6:24780825-24781076(+)$1	251	152	179	22.7218
gugugagucugugugaggguguguggc	chr19:28918332-28918625(-)$1	293	31	58	19.1641
AAUGGAAUGCAAAAAAGCCAAGCCCUC	chr4:2930080-2930394(+)$1	314	253	280	21.5072
GCGCGCUUGGAGCGUGUUAGGCGAGUG	chr1:109642853-109643057(+)$1	204	72	99	25.9556
UGGGUCUUCCUACUAaagaagaagaag	chr8:30945292-30945537(+)$1	245	69	96	23.0543
CAGAAGAGGUAAGCAGCUCAUCCUGUU	chr7:127975841-127976150(-)$1	309	242	269	25.2329
AGCAGGGGAGCAGCGUUUGAUCCCCCC	chr1:161183942-161184236(+)$1	294	40	67	19.9287
CAAAUAUUGGACAGAAGACAUCAAUGA	chr7:91708445-91708751(+)$1	306	92	119	24.2083
GCGCGCUUGGAGCGUGUUAGGCGAGUG	chr1:109642814-109643022(+)$1	208	111	138	25.9556
CUUUAGGAAGAAGAAUUUGGACUUGAU	chr9:100774624-100774854(+)$1	230	72	99	23.3619
AUCAGUUUUAGAACCAAAAAAAGAGCA	chr6:99849282-99849547(-)$1	265	183	210	23.8049
GCGCGCUUGGAGCGUGUUAGGCGAGUG	chr1:109642841-109643053(+)$1	212	84	111	25.9556
GCAGCAGCUACCAAGAAACCAGCCCCU	chr15:66791638-66791889(-)$1	251	61	88	22.6494
CUUUUGUUAGGAAAAAAUUGAAAGAAC	chr9:127998783-127999061(-)$1	278	238	265	22.9102
GUGGAAUAACCUAUUUUGAAAAAUUCC	chr15:69072327-69072582(-)$1	255	163	190	18.9719
GCGCGCUUGGAGCGUGUUAGGCGAGUG	chr1:109642831-109643037(+)$1	206	94	121	25.9556
GCGCGCUUGGAGCGUGUUAGGCGAGUG	chr1:109642824-109643031(+)$1	207	101	128	25.9556
AUGCUUCGACGAAUUAAGGUAGUAUUA	chr12:104340345-104340573(+)$1	228	111	138	22.3454
UAUGUGAUGUGCAUCCAAAAGACAUUG	chr9:134016206-134016456(+)$1	250	175	202	21.8716
AGGAUGAGGAUGAAGGUGGGCCUAAUG	chr9:100774602-100774807(+)$1	205	137	164	22.7469
ACAAUUUCAUUUGUCAGAUUUUGGAAC	chr17:73664515-73664809(+)$1	294	226	253	24.2496
GUAAGACACGUCUAAUAACUGGGUUUU	chr7:148514851-148515175(-)$1	324	207	234	22.9304
UUCAGACCUAAGUAAUAUGGAAGGUAA	chr1:52305957-52306232(-)$1	275	85	112	22.8424
GAUUUUUGAAUGGAAAAAAUGCUCGAG	chr1:24975313-24975568(+)$1	255	73	100	24.8404
AGCAACAGUCUUCAAGAAAUUAAACUG	chr11:65272066-65272280(+)$1	214	101	128	22.2530
gaggaaggagagguaaaagaaAAUUUG	chr9:131456218-131456421(+)$1	203	91	118	23.4724
AGGUGAGUAUUAGAAUGUGUUUAUUAA	chr17:34171852-34172137(+)$1	285	188	215	23.6259
AACCAAUUUUUUAUUCAUUUUAAAUAG	chr2:170668204-170668463(+)$1	259	69	96	23.8274
gaggaaggagagguaaaagaaAAUUUG	chr9:131456193-131456418(+)$1	225	116	143	23.4724
AAUUUUGCUUCUUUAGGACACCAUGUA	chr15:40488685-40489029(+)$1	344	44	71	24.1394
UCGAGUCAAACUGUGGGAUUCUGAUUU	chr11:110101146-110101465(-)$1	319	12	39	23.7783
GCGCGCUUGGAGCGUGUUAGGCGAGUG	chr1:109642859-109643079(+)$1	220	66	93	25.9556
ugaaggagaagaugauuaagaCCCCAG	chr9:100777601-100777856(+)$1	255	93	120	22.0291
AGUAUGAGCGAGAAAAGGAGAGAGCGC	chr1:11083388-11083678(+)$1	290	145	172	22.1052
CUUAAUUUUAUUUUUAACUACAGAAGU	chr12:95879554-95879797(+)$1	243	49	76	21.2228
GCGGGGGCGGGGAGGAAGGGGCGAGUU	chr5:177019211-177019501(+)$1	290	190	217	23.0664
CAAAAGAAAAAGGGAAGAAAAUCUGAA	chr14:102449685-102449999(+)$1	314	113	140	22.9780
AACCAAUUUUUUAUUCAUUUUAAAUAG	chr2:170668076-170668357(+)$1	281	197	224	23.8274
GGUGGUCUUCCUUCAGGUCUCGAAGUA	chr16:2809473-2809722(+)$1	249	80	107	22.2332
gcggcggcgguggagguggagguggug	chr7:23545677-23545948(-)$1	271	86	113	21.3180
UUGUUAUAAAAGUACUUAUAUUAUGAC	chr11:9461947-9462255(+)$1	308	20	47	23.3345
CGGCUGCGGAUGGAAGAGGAGGCAGCC	chr2:233697466-233697806(+)$1	340	163	190	19.9303
UAGCCUGGCUCAAUAUCUAAUCAAUGU	chr12:53865370-53865612(+)$1	242	191	218	23.4314
CCAUACUUGUGUAGAUGUUGAAAGUGU	chr11:32610123-32610390(+)$1	267	2	29	22.6056
CUUGAAUGUUAUUAACUCUUCUAUAUU	chr7:139060731-139060974(+)$1	243	45	72	23.3198
UUGGGUUUUAGGUAGAAGUAAAGAGCA	chr9:90342838-90343132(+)$1	294	54	81	23.8650
GCGCGCUUGGAGCGUGUUAGGCGAGUG	chr1:109642879-109643097(+)$1	218	46	73	25.9556
CUAAAUACAUCAUCAUGUUGCUUUUGU	chr12:42707397-42707669(-)$1	272	12	39	18.5833
GUUGGGACUUAGAUGGCCGUGAAUGUU	chr11:65211465-65211793(+)$1	328	21	48	23.2147
CGCCCUGGGAUCUGAAUUGCCCCUUGG	chr1:28907503-28907779(-)$1	276	191	218	22.2267
AGCAACAGUCUUCAAGAAAUUAAACUG	chr11:65272056-65272266(+)$1	210	111	138	22.2530
GACCUCUUGCAUAAUGACUCUAAGGGG	chr1:246349907-246350290(-)$1	383	70	97	23.0517

#DB
(.(((.((((...........))))..	chr13:111545074-111545411(-)$1	1	63	90	22.5780
(((((((((...........)))))))	chr6:99848025-99848293(-)$1	1	54	81	23.4617
.(((.((((...........)))).))	chr6:24780825-24781076(+)$1	1	152	179	22.7218
(((.(((((...............)))	chr19:28918332-28918625(-)$1	1	31	58	19.1641
..((((..((...........))..))	chr4:2930080-2930394(+)$1	1	253	280	21.5072
(((((((((............))))))	chr1:109642853-109643057(+)$1	1	72	99	25.9556
(...(((((...........)))))..	chr8:30945292-30945537(+)$1	1	69	96	23.0543
(((((.(((............))).))	chr7:127975841-127976150(-)$1	1	242	269	25.2329
.(((((((...............))))	chr1:161183942-161184236(+)$1	1	40	67	19.9287
((..(((((............))))).	chr7:91708445-91708751(+)$1	1	92	119	24.2083
(((((((((............))))))	chr1:109642814-109643022(+)$1	1	111	138	25.9556
(((((..(((...........)))..)	chr9:100774624-100774854(+)$1	1	72	99	23.3619
))))(((((............))))).	chr6:99849282-99849547(-)$1	1	183	210	23.8049
(((((((((............))))))	chr1:109642841-109643053(+)$1	1	84	111	25.9556
.(((..(((...........)))..))	chr15:66791638-66791889(-)$1	1	61	88	22.6494
(((..(((................)))	chr9:127998783-127999061(-)$1	1	238	265	22.9102
..(((((...............)))))	chr15:69072327-69072582(-)$1	1	163	190	18.9719
(((((((((............))))))	chr1:109642831-109643037(+)$1	1	94	121	25.9556
(((((((((............))))))	chr1:109642824-109643031(+)$1	1	101	128	25.9556
.(((((..((...........))....	chr12:104340345-104340573(+)$1	1	111	138	22.3454
((.(((((((...........))))).	chr9:134016206-134016456(+)$1	1	175	202	21.8716
.(.((.(((...........))).)).	chr9:100774602-100774807(+)$1	1	137	164	22.7469
(((.(((((............))))).	chr17:73664515-73664809(+)$1	1	226	253	24.2496
(((((((.(............))))))	chr7:148514851-148515175(-)$1	1	207	234	22.9304
(((..((((............))))..	chr1:52305957-52306232(-)$1	1	85	112	22.8424
(((((((((.............)))))	chr1:24975313-24975568(+)$1	1	73	100	24.8404
.((..((((..............))))	chr11:65272066-65272280(+)$1	1	101	128	22.2530
..((..(((..............))).	chr9:131456218-131456421(+)$1	1	91	118	23.4724
((((.((((............)))).)	chr17:34171852-34172137(+)$1	1	188	215	23.6259
((((.((((............)))).)	chr2:170668204-170668463(+)$1	1	69	96	23.8274
..((..(((..............))).	chr9:131456193-131456418(+)$1	1	116	143	23.4724
((((((((................)))	chr15:40488685-40489029(+)$1	1	44	71	24.1394
.(((((((.............))))))	chr11:110101146-110101465(-)$1	1	12	39	23.7783
(((((((((............))))))	chr1:109642859-109643079(+)$1	1	66	93	25.9556
(...((................))...	chr9:100777601-100777856(+)$1	1	93	120	22.0291
.(((((.((..............)).)	chr1:11083388-11083678(+)$1	1	145	172	22.1052
(((((((((.............)))))	chr12:95879554-95879797(+)$1	1	49	76	21.2228
.((((..((............))..))	chr5:177019211-177019501(+)$1	1	190	217	23.0664
(...(((..............)))...	chr14:102449685-102449999(+)$1	1	113	140	22.9780
((((.((((............)))).)	chr2:170668076-170668357(+)$1	1	197	224	23.8274
(.((..((((...........))))..	chr16:2809473-2809722(+)$1	1	80	107	22.2332
((.((.((.............)).)).	chr7:23545677-23545948(-)$1	1	86	113	21.3180
..(((((((...........)))))))	chr11:9461947-9462255(+)$1	1	20	47	23.3345
(((((((..............))))))	chr2:233697466-233697806(+)$1	1	163	190	19.9303
..(((((((................))	chr12:53865370-53865612(+)$1	1	191	218	23.4314
.(((((((.............))))))	chr11:32610123-32610390(+)$1	1	2	29	22.6056
((..(((((.............)))))	chr7:139060731-139060974(+)$1	1	45	72	23.3198
(((((((((............))))).	chr9:90342838-90343132(+)$1	1	54	81	23.8650
(((((((((............))))))	chr1:109642879-109643097(+)$1	1	46	73	25.9556
(((((.(((...............)))	chr12:42707397-42707669(-)$1	1	12	39	18.5833
(..(((((................)))	chr11:65211465-65211793(+)$1	1	21	48	23.2147
.(((..(((...........)))..))	chr1:28907503-28907779(-)$1	1	191	218	22.2267
.((..((((..............))))	chr11:65272056-65272266(+)$1	1	111	138	22.2530
(.(((((((...........)))))))	chr1:246349907-246350290(-)$1	1	70	97	23.0517

#PSSM
= : 0.18	[ : 0.12	e : 0.09	d : 0.07	! : 0.07	g : 0.05	h : 0.05	b : 0.05	i : 0.03	" : 0.03	$ : 0.03	: : 0.03	c : 0.03	f : 0.03	' : 0.01	B : 0.01	a : 0.01	
= : 0.16	g : 0.11	e : 0.11	" : 0.09	! : 0.09	c : 0.07	d : 0.07	[ : 0.05	h : 0.05	b : 0.05	f : 0.05	i : 0.03	a : 0.01	
g : 0.16	= : 0.16	e : 0.12	b : 0.09	c : 0.07	d : 0.05	" : 0.05	! : 0.05	[ : 0.05	h : 0.05	f : 0.05	i : 0.03	
= : 0.16	g : 0.14	! : 0.11	e : 0.11	b : 0.11	c : 0.07	" : 0.05	h : 0.05	f : 0.05	i : 0.03	[ : 0.03	d : 0.03	
e : 0.20	! : 0.16	= : 0.14	g : 0.14	[ : 0.07	b : 0.07	c : 0.03	i : 0.03	d : 0.03	h : 0.03	f : 0.03	
e : 0.22	d : 0.14	= : 0.14	! : 0.12	g : 0.11	[ : 0.09	i : 0.03	c : 0.03	h : 0.03	b : 0.01	f : 0.01	
e : 0.18	d : 0.16	c : 0.16	= : 0.14	g : 0.11	! : 0.07	i : 0.03	h : 0.03	y : 0.01	[ : 0.01	b : 0.01	f : 0.01	
d : 0.16	e : 0.16	c : 0.16	= : 0.14	g : 0.11	b : 0.05	i : 0.03	! : 0.03	w : 0.03	x : 0.01	[ : 0.01	y : 0.01	h : 0.01	
d : 0.16	e : 0.14	= : 0.14	c : 0.14	b : 0.07	y : 0.07	v : 0.05	g : 0.05	x : 0.03	w : 0.03	i : 0.01	a : 0.01	h : 0.01	
u : 0.33	t : 0.14	w : 0.12	v : 0.11	y : 0.09	x : 0.07	d : 0.03	b : 0.03	c : 0.01	e : 0.01	
u : 0.33	t : 0.25	w : 0.12	v : 0.11	y : 0.09	x : 0.07	
u : 0.33	t : 0.25	w : 0.12	v : 0.11	y : 0.09	x : 0.07	
u : 0.33	t : 0.25	w : 0.12	v : 0.11	y : 0.09	x : 0.07	
u : 0.33	t : 0.25	w : 0.12	v : 0.11	y : 0.09	x : 0.07	
u : 0.33	t : 0.25	w : 0.12	v : 0.11	y : 0.09	x : 0.07	
u : 0.33	t : 0.25	w : 0.12	v : 0.11	y : 0.09	x : 0.07	
u : 0.33	t : 0.25	w : 0.12	v : 0.11	y : 0.09	x : 0.07	
u : 0.33	t : 0.25	w : 0.12	v : 0.11	y : 0.09	x : 0.07	
u : 0.33	t : 0.25	w : 0.12	v : 0.11	y : 0.09	x : 0.07	
u : 0.33	t : 0.25	w : 0.12	v : 0.11	y : 0.09	x : 0.07	
u : 0.33	w : 0.12	t : 0.11	v : 0.11	y : 0.09	x : 0.07	c : 0.05	g : 0.03	i : 0.01	d : 0.01	e : 0.01	
d : 0.12	= : 0.12	e : 0.11	c : 0.11	y : 0.09	w : 0.09	x : 0.07	b : 0.07	g : 0.07	v : 0.05	i : 0.01	a : 0.01	f : 0.01	
= : 0.14	e : 0.14	d : 0.12	c : 0.11	b : 0.09	w : 0.09	y : 0.07	g : 0.07	x : 0.05	h : 0.03	i : 0.01	f : 0.01	
d : 0.16	= : 0.14	e : 0.14	c : 0.09	g : 0.09	2 : 0.07	y : 0.07	x : 0.03	] : 0.03	h : 0.03	b : 0.03	i : 0.01	4 : 0.01	f : 0.01	
e : 0.18	d : 0.14	= : 0.14	2 : 0.09	g : 0.09	c : 0.07	b : 0.05	i : 0.03	] : 0.03	h : 0.03	3 : 0.03	4 : 0.01	f : 0.01	y : 0.01	
e : 0.16	= : 0.14	c : 0.12	g : 0.12	d : 0.07	] : 0.07	2 : 0.05	3 : 0.05	i : 0.03	b : 0.03	h : 0.03	4 : 0.01	7 : 0.01	f : 0.01	
= : 0.14	g : 0.14	e : 0.12	2 : 0.11	c : 0.09	d : 0.07	] : 0.07	3 : 0.05	h : 0.05	i : 0.03	: : 0.01	4 : 0.01	7 : 0.01	f : 0.01	

#score	1246.23878332998
#seq	54
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF190WAS_EFTUD2_CDS_m1_run2.txt

#BEAR
==========[a[ddddnnnnndddd]a]==========	chr20:61438819-61439129(+)$1	310	10	49	20.6529
f[bb!!ddddcccddddnnnnndddd666666ccc]ddd	chr2:176829003-176829291(-)$1	288	168	207	13.1815
ccc[eeeee####cccooooooccc4444eeeee]ccc]	chr11:64664219-64664467(-)$1	248	103	142	15.2146
eee[a"""eeeee[cccooooooccc]eeeee333aeee	chr11:372722-372995(+)$1	273	127	166	13.2459
iiiiiiiii####ddddooooooddddiiiiiiiii:::	chr2:131878361-131878677(+)$1	316	246	285	15.4457
h"""ggggggg!!ddddnnnnnddddggggggg]hhhhh	chr11:64900145-64900398(-)$1	253	173	212	17.3466
dd[ccc[dddd"""cccnnnnnccc22dddd]ccc333d	chr16:28845728-28845952(+)$1	224	56	95	15.4720
a[ccceeeee"""ddddnnnnndddd333eeeee4444c	chr14:21462906-21463292(+)$1	386	184	223	18.5064
dddd[ggggggg[ddddoooooodddd22ggggggg]dd	chr16:2086811-2087100(+)$1	289	216	255	15.8520
gggg[eeeee"""cccooooooccc22eeeee]gggggg	chr17:4907125-4907403(+)$1	278	110	149	15.0360
ddd==========xxxxxxxxxxxxxxx==========F	chr11:102221460-102221817(+)$1	357	111	150	13.1515
eeeee!!bb[cccddddnnnnndddd]ccc]bb22eeee	chr2:111425174-111425443(-)$1	269	169	208	14.8236
[a[a[ffffff"""cccnnnnnccc4444ffffff]a]a	chr17:61875305-61875618(+)$1	313	60	99	16.5067
===========[eeeeeooooooeeeee]==========	chr14:102449601-102449830(+)$1	229	135	174	16.5114
#ccc[eeeee####cccnnnnnccc333eeeeeccc22d	chr11:65350520-65350803(+)$1	283	174	213	16.6050
gggggg"""ccc!!ddddmmmmdddd]ccc22ggggggg	chr12:6860699-6860963(-)$1	264	110	149	13.6585
!!dddd!!cccbbddddnnnnndddd]bb]ccc22dddd	chr12:1038742-1039052(-)$1	310	13	52	14.8350
eeee[eeeee"""ddddnnnnndddd55555eeeee]ee	chr17:42114573-42114890(-)$1	317	35	74	14.1332
hhhhhhh[ccc!!ddddnnnnndddd]ccc]hhhhhhhh	chr22:30738724-30738985(-)$1	261	175	214	16.0034
dddd[ffffff!!ddddoooooodddd22ffffff]ddd	chr11:9500912-9501248(+)$1	336	183	222	14.1910
feeeee!!ccc!!cccannnnna]ccc22ccc]eeeeeE	chr19:59059736-59059957(+)$1	221	90	129	13.6336
e[ggggggg[bb"""bbnnnnnbb333bb]ggggggg]e	chr20:5564792-5565081(-)$1	289	227	266	14.7766
=========####ddddqqqqqqqqdddd333=======	chr19:326485-326767(-)$1	282	154	193	13.4874
[ccc[bbdddd!!eeeeellleeeee333dddd]bb]cc	chr6:31860353-31860656(-)$1	303	55	94	12.0358
====[bb[bb[a!!cccnnnnnccc]a]bb333bb====	chr1:52824691-52824988(-)$1	297	191	230	15.6485
===========fffffflllffffff333==========	chr1:3541779-3542099(+)$1	320	280	319	13.4147
[cccccc==========nnnnn==========4444ccc	chr1:54393922-54394168(-)$1	246	147	186	15.9167
$$gggggggeeeeecccooooooccc4444eeeee]ggg	chr16:30081278-30081530(+)$1	252	102	141	14.0633
####a!!eeeeeeeeeennnnneeeee]eeeee22a===	chr16:67234210-67234481(+)$1	271	217	256	13.9154
ggg"""dddd####ddddmmmmdddd]ddddggggggg:	chr1:35652571-35652834(-)$1	263	214	253	12.9585
eee[hhhhhhhhaddddnnnnndddd22a]hhhhhhhhe	chr21:46910089-46910336(+)$1	247	156	195	14.5157
==========!!ddddoooooodddd4444=========	chr4:76416698-76416962(-)$1	264	196	235	18.8753
iiiiiiiii[bb[ddddnnnnndddd]bb333iiiiiii	chr20:31017002-31017302(+)$1	300	113	152	18.7599
a[ccc[gggggggddddnnnnndddd333ggggggg]cc	chr1:154962664-154962920(+)$1	256	83	122	18.5177
==a[ccc[dddd[eeeeennnnneeeee]dddd]ccc]a	chr17:34171095-34171390(+)$1	295	112	151	12.9545
ee==========!!cccooooooccc]==========]e	chr6:42851250-42851674(+)$1	424	202	241	17.8034
ciiiiiiiii"""cccooooooccciiiiiiiii22ccc	chr19:2233802-2234059(-)$1	257	21	60	16.3454
$$a[bb!!ccc!!ddddoooooodddd]ccc]bb]a444	chr19:41782089-41782330(+)$1	241	127	166	14.9987
iiiiiiiii####ddddooooooddddiiiiiiiiieee	chr1:220384066-220384344(-)$1	278	170	209	18.0325
[cccdddd!!bb[ddddooooooddddbbdddd]ccc]e	chr3:142141428-142141772(-)$1	344	153	192	13.9744
==========[a[ddddnnnnndddd]a]==========	chr20:61438742-61439019(+)$1	277	87	126	20.6529
eeccc[bb!!a!!ddddnnnnndddd22a22bbccc333	chr17:8053323-8053611(-)$1	288	35	74	17.0050
ccc"""dddd####cccnnnnncccdddd22ccc]a22b	chr19:14521672-14521903(-)$1	231	165	204	15.5617
ddd==========[cccnnnnnccc==========333d	chr17:39920945-39921227(-)$1	282	70	109	17.8689
ggggggg[==========mmmm==========]gggggg	chr11:6621688-6621970(-)$1	282	88	127	13.1651
d[cccffffff[eeeeennnnneeeeeffffff]ccc22	chr8:145541143-145541431(-)$1	288	108	147	13.2024
hhh!!ffffff!!ddddnnnnndddd]ffffffhhhhhh	chr8:144874718-144874929(-)$1	211	75	114	15.6459
dd[a[dddd####ddddllldddd]dddd]adddd]a]b	chr17:2227764-2228055(-)$1	291	191	230	12.7485
=========="""ddddnnnnndddd==========:::	chr1:182812440-182812715(+)$1	275	156	195	17.9376

#otherMatches

#Seq PSSM
GUUGGGACUCACUUGGGGGUCUCCCAUGGGGGUCCUAAU	chr20:61438819-61439129(+)$1	310	10	49	20.6529
CUGUAACUGCAAGACCUGGACAAGGUAAAUAACUUAGUA	chr2:176829003-176829291(-)$1	288	168	207	13.1815
UCCUCACCUCCCUGCCCUGCCAGGCUCCUGGGUGUGGAC	chr11:64664219-64664467(-)$1	248	103	142	15.2146
AGUACAAGGGGCAGGUGAACCUGCACGUGUUUGAGGACU	chr11:372722-372995(+)$1	273	127	166	13.2459
UGUUUGCUUAAAGUUGAUCAUAUUUAAAAGCAAAUAACA	chr2:131878361-131878677(+)$1	316	246	285	15.4457
GCUCUUUCACUGCCGCAUUGUCUGUGAGUGAGAUUCAGG	chr11:64900145-64900398(-)$1	253	173	212	17.3466
GGCAGGUGGAGCUUGAGCUCUCCUCUCCUCCUCCUCUUC	chr16:28845728-28845952(+)$1	224	56	95	15.4720
CUUGAAGCAGCUUCAUGGAUUUCAUGCCUUUGCUCCUCU	chr14:21462906-21463292(+)$1	386	184	223	18.5064
AGGGUGCCUCUGGGGGUACCCAGGCCCGACAGAGGCCCC	chr16:2086811-2087100(+)$1	289	216	255	15.8520
GGGGCUUGGGAAAGGGGAGUGACCCACCCUAACCUCCUU	chr17:4907125-4907403(+)$1	278	110	149	15.0360
AAGGUCGCAAUGAUGAUGUCAAAUGCUUUUGUUGUGAUG	chr11:102221460-102221817(+)$1	357	111	150	13.1515
GAGUGAUCACGAUUUCUAAAUCAGAAUAUUCUGUGCACU	chr2:111425174-111425443(-)$1	269	169	208	14.8236
AUGUCAUUCUAUACAGCCUUUUGUUUCAUUAGGAUCAGG	chr17:61875305-61875618(+)$1	313	60	99	16.5067
GAAGUUUUUCAGACUUGGGAUGAUGAGUAUGAGAAACUU	chr14:102449601-102449830(+)$1	229	135	174	16.5114
UCUCAGGGCCCGAGGCUGGAAUGGCAGAGGCCCGAGUAC	chr11:65350520-65350803(+)$1	283	174	213	16.6050
UGUUCCUGUAGGCUGGAGCUGUCUCCCCCUUUGGGAUGC	chr12:6860699-6860963(-)$1	264	110	149	13.6585
CAACAAUGGCAAGUUCUACGUGGGAGUCUGUGCAUUUGU	chr12:1038742-1039052(-)$1	310	13	52	14.8350
UGUUAUUACACCCCCAUAUCAAGUGGAAAACUGUAAAGG	chr17:42114573-42114890(-)$1	317	35	74	14.1332
GAGAAGUUUUGGAUCAGGUAAACUGAAUAGCAUUUCUUG	chr22:30738724-30738985(-)$1	261	175	214	16.0034
AUGUAAAGCUACUUUUUAAUAUAAAAAUCUAGCUUAGCA	chr11:9500912-9501248(+)$1	336	183	222	14.1910
CUUACGUUUCUCUCUUCUUUUUGCAGGCAAGAUUGUGGC	chr19:59059736-59059957(+)$1	221	90	129	13.6336
UAUAGCACAGGAAAAUAGAACAUAcagucaugugcugca	chr20:5564792-5565081(-)$1	289	227	266	14.7766
UCUGUUUUCCCAAAGCUCGUUUCCUGGCUGAUGAAGACA	chr19:326485-326767(-)$1	282	154	193	13.4874
UCAGUCCCAUCCCCCACCCCCGGUGGCUUGAUGUGGUCU	chr6:31860353-31860656(-)$1	303	55	94	12.0358
GCCCUGCAGCAGAGGCUGAACAAGUACCGCGAGGCGGGC	chr1:52824691-52824988(-)$1	297	191	230	15.6485
GGAGUGUGGCUGCUUACCGAGUAAGCCGGGGCUGCGCUC	chr1:3541779-3542099(+)$1	320	280	319	13.4147
CUGAGCAUGAAGGAGUAGAUAAUAUUCCUUUGAUUCUGC	chr1:54393922-54394168(-)$1	246	147	186	15.9167
CUGGGUGGAUGGGACUCGGAGAAGAGCCCUUCUCACUCC	chr16:30081278-30081530(+)$1	252	102	141	14.0633
CUCUGAGCAUCCCCUUUGUGAGGAAGGUGGGUGGGCUUU	chr16:67234210-67234481(+)$1	271	217	256	13.9154
CAUGAUGGGAAGUGACAUGGUAAUGUAUCCUGUGGGACG	chr1:35652571-35652834(-)$1	263	214	253	12.9585
AUUGCUGGGCCCCAGGUGAGUUGCCUUGGUGGGCCCAGG	chr21:46910089-46910336(+)$1	247	156	195	14.5157
GUGGUGUGGGGAGGUGGACAAACAUUGUUACUUAUACUA	chr4:76416698-76416962(-)$1	264	196	235	18.8753
UCUUUUGUUCUCUCUUGGAACGCAGGCGAACAAACAAAA	chr20:31017002-31017302(+)$1	300	113	152	18.7599
GAGGUUUGGGCUCCAAGAGAAGCUUGACAGAGCCCACGC	chr1:154962664-154962920(+)$1	256	83	122	18.5177
GCUGUGGAGGAUACAGAAAGGGGUUCUGAGUCCAUUAGA	chr17:34171095-34171390(+)$1	295	112	151	12.9545
GCAAAUUGUGCUAGGAUGUCAGGGUUGAGCACAAUUUAG	chr6:42851250-42851674(+)$1	424	202	241	17.8034
CUCAUCUUCUACAGGAACGAAAUCCGGAAGGUGACGGGC	chr19:2233802-2234059(-)$1	257	21	60	16.3454
AGAGAAGGGGAAGGGACAGAGAAGUCCAUCCAUUGUAAU	chr19:41782089-41782330(+)$1	241	127	166	14.9987
UUACUUCAGGUUAUGUACGCUUCUACACUGAGGUGAGUU	chr1:220384066-220384344(-)$1	278	170	209	18.0325
UUGACUUUGUUCUCUAUUUUACUGUAGGAAAAGAUCACA	chr3:142141428-142141772(-)$1	344	153	192	13.9744
GUUGGGACUCACUUGGGGGUCUCCCAUGGGGGUCCUAAU	chr20:61438742-61439019(+)$1	277	87	126	20.6529
CCAGCUCAGAGCAGGACAACCCGUCCACCAGUGGCUGCA	chr17:8053323-8053611(-)$1	288	35	74	17.0050
CGGAAGGCUCUUGAGUGGGUUACAUGGGCGGCCGGCAGG	chr19:14521672-14521903(-)$1	231	165	204	15.5617
GAGGGCGGCUGGGGUGGGAGCUCUGCCCAGCUGCCAGGC	chr17:39920945-39921227(-)$1	282	70	109	17.8689
CACAGAUGCAUGUAUGUAUGUGUGCAUGCAUGAGUCUGU	chr11:6621688-6621970(-)$1	282	88	127	13.1651
CAGGUGCUCUUGCAGCUGGGGUGGCUGGGGAGUGACCAG	chr8:145541143-145541431(-)$1	288	108	147	13.2024
GGGGUUGGGUCUCGGCUGGUCUGGCCUGACCCACCCUGC	chr8:144874718-144874929(-)$1	211	75	114	15.6459
CUGUGGUUUAAACCAGUGGAACUGAGAACGAAGUGGGGC	chr17:2227764-2228055(-)$1	291	191	230	12.7485
AUGUAUGUUGUAAAGUUGUACAAACUCAAUAUGCGUAAG	chr1:182812440-182812715(+)$1	275	156	195	17.9376

#DB
((((((((((.(.((((.....)))).).))))))))))	chr20:61438819-61439129(+)$1	1	10	49	20.6529
(.((..(((((((((((.....))))......))).)))	chr2:176829003-176829291(-)$1	1	168	207	13.1815
(((.(((((....(((......)))....))))).))).	chr11:64664219-64664467(-)$1	1	103	142	15.2146
(((.(...(((((.(((......))).)))))...))))	chr11:372722-372995(+)$1	1	127	166	13.2459
(((((((((....((((......)))))))))))))...	chr2:131878361-131878677(+)$1	1	246	285	15.4457
(...(((((((..((((.....))))))))))).)))))	chr11:64900145-64900398(-)$1	1	173	212	17.3466
((.(((.((((...(((.....)))..)))).)))...)	chr16:28845728-28845952(+)$1	1	56	95	15.4720
(.((((((((...((((.....))))...)))))....)	chr14:21462906-21463292(+)$1	1	184	223	18.5064
((((.(((((((.((((......))))..))))))).))	chr16:2086811-2087100(+)$1	1	216	255	15.8520
((((.(((((...(((......)))..))))).))))))	chr17:4907125-4907403(+)$1	1	110	149	15.0360
)))((((((((((...............))))))))))(	chr11:102221460-102221817(+)$1	1	111	150	13.1515
(((((..((.(((((((.....)))).))).))..))))	chr2:111425174-111425443(-)$1	1	169	208	14.8236
.(.(.((((((...(((.....)))....)))))).).)	chr17:61875305-61875618(+)$1	1	60	99	16.5067
(((((((((((.(((((......))))).))))))))))	chr14:102449601-102449830(+)$1	1	135	174	16.5114
.(((.(((((....(((.....)))...))))))))..)	chr11:65350520-65350803(+)$1	1	174	213	16.6050
((((((...(((..((((....)))).)))..)))))))	chr12:6860699-6860963(-)$1	1	110	149	13.6585
..((((..(((((((((.....)))).)).)))..))))	chr12:1038742-1039052(-)$1	1	13	52	14.8350
((((.(((((...((((.....)))).....))))).))	chr17:42114573-42114890(-)$1	1	35	74	14.1332
(((((((.(((..((((.....)))).))).))))))))	chr22:30738724-30738985(-)$1	1	175	214	16.0034
((((.((((((..((((......))))..)))))).)))	chr11:9500912-9501248(+)$1	1	183	222	14.1910
)(((((..(((..((((.....).)))..))).))))))	chr19:59059736-59059957(+)$1	1	90	129	13.6336
(.(((((((.((...((.....))...)).))))))).)	chr20:5564792-5565081(-)$1	1	227	266	14.7766
(((((((((....((((........))))...)))))))	chr19:326485-326767(-)$1	1	154	193	13.4874
.(((.((((((..(((((...)))))...)))).)).))	chr6:31860353-31860656(-)$1	1	55	94	12.0358
((((.((.((.(..(((.....))).).))...))))))	chr1:52824691-52824988(-)$1	1	191	230	15.6485
(((((((((((((((((...))))))...))))))))))	chr1:3541779-3542099(+)$1	1	280	319	13.4147
.((((((((((((((((.....))))))))))....)))	chr1:54393922-54394168(-)$1	1	147	186	15.9167
..(((((((((((((((......)))....))))).)))	chr16:30081278-30081530(+)$1	1	102	141	14.0633
....(..((((((((((.....))))).)))))..))))	chr16:67234210-67234481(+)$1	1	217	256	13.9154
(((...((((....((((....)))).))))))))))).	chr1:35652571-35652834(-)$1	1	214	253	12.9585
(((.(((((((((((((.....))))..).)))))))))	chr21:46910089-46910336(+)$1	1	156	195	14.5157
((((((((((..((((......))))....)))))))))	chr4:76416698-76416962(-)$1	1	196	235	18.8753
(((((((((.((.((((.....)))).))...)))))))	chr20:31017002-31017302(+)$1	1	113	152	18.7599
(.(((.(((((((((((.....))))...))))))).))	chr1:154962664-154962920(+)$1	1	83	122	18.5177
))(.(((.((((.(((((.....))))).)))).))).)	chr17:34171095-34171390(+)$1	1	112	151	12.9545
((((((((((((..(((......))).)))))))))).)	chr6:42851250-42851674(+)$1	1	202	241	17.8034
((((((((((...(((......))))))))))))..)))	chr19:2233802-2234059(-)$1	1	21	60	16.3454
..(.((..(((..((((......)))).))).)).)...	chr19:41782089-41782330(+)$1	1	127	166	14.9987
(((((((((....((((......)))))))))))))(((	chr1:220384066-220384344(-)$1	1	170	209	18.0325
.(((((((..((.((((......)))))))))).))).)	chr3:142141428-142141772(-)$1	1	153	192	13.9744
((((((((((.(.((((.....)))).).))))))))))	chr20:61438742-61439019(+)$1	1	87	126	20.6529
(((((.((..(..((((.....))))..)..)))))...	chr17:8053323-8053611(-)$1	1	35	74	17.0050
(((...((((....(((.....)))))))..))).)..)	chr19:14521672-14521903(-)$1	1	165	204	15.5617
(((((((((((((.(((.....)))))))))))))...)	chr17:39920945-39921227(-)$1	1	70	109	17.8689
(((((((.((((((((((....)))))))))).))))))	chr11:6621688-6621970(-)$1	1	88	127	13.1651
(.(((((((((.(((((.....))))))))))).)))..	chr8:145541143-145541431(-)$1	1	108	147	13.2024
(((..((((((..((((.....)))).))))))))))))	chr8:144874718-144874929(-)$1	1	75	114	15.6459
((.(.((((....((((...)))).)))).))))).).)	chr17:2227764-2228055(-)$1	1	191	230	12.7485
((((((((((...((((.....))))))))))))))...	chr1:182812440-182812715(+)$1	1	156	195	17.9376

#PSSM
= : 0.18	e : 0.14	d : 0.14	g : 0.08	[ : 0.08	c : 0.06	i : 0.06	h : 0.06	f : 0.04	a : 0.04	# : 0.04	$ : 0.04	! : 0.02	
= : 0.18	e : 0.14	c : 0.12	d : 0.12	[ : 0.10	i : 0.08	g : 0.08	h : 0.04	$ : 0.04	" : 0.02	a : 0.02	! : 0.02	# : 0.02	
c : 0.20	= : 0.18	g : 0.12	e : 0.10	d : 0.10	i : 0.08	[ : 0.06	h : 0.04	a : 0.04	b : 0.02	" : 0.02	# : 0.02	
= : 0.22	c : 0.18	[ : 0.10	g : 0.10	i : 0.08	" : 0.06	d : 0.06	e : 0.06	a : 0.04	b : 0.02	h : 0.02	# : 0.02	! : 0.02	
= : 0.20	[ : 0.18	c : 0.14	g : 0.10	i : 0.08	e : 0.06	! : 0.04	a : 0.04	d : 0.04	h : 0.04	" : 0.04	b : 0.02	
= : 0.20	e : 0.12	g : 0.12	i : 0.08	f : 0.08	! : 0.06	" : 0.06	c : 0.06	d : 0.06	b : 0.06	h : 0.04	[ : 0.04	
= : 0.20	g : 0.12	d : 0.10	e : 0.10	! : 0.10	i : 0.08	f : 0.08	b : 0.06	" : 0.04	h : 0.04	c : 0.04	[ : 0.02	
= : 0.22	d : 0.14	e : 0.12	g : 0.10	i : 0.08	f : 0.08	[ : 0.08	! : 0.06	" : 0.04	b : 0.04	h : 0.02	
= : 0.24	d : 0.14	e : 0.14	g : 0.10	i : 0.08	f : 0.08	c : 0.08	b : 0.04	! : 0.04	" : 0.02	h : 0.02	
= : 0.22	e : 0.14	d : 0.12	# : 0.10	c : 0.10	f : 0.08	g : 0.06	[ : 0.06	! : 0.04	b : 0.02	h : 0.02	i : 0.02	
# : 0.16	c : 0.14	= : 0.14	" : 0.10	f : 0.08	[ : 0.06	e : 0.06	g : 0.06	d : 0.06	b : 0.06	h : 0.02	! : 0.02	a : 0.02	
! : 0.18	# : 0.16	" : 0.14	= : 0.10	b : 0.08	a : 0.06	c : 0.06	e : 0.06	g : 0.04	[ : 0.04	f : 0.02	h : 0.02	d : 0.02	
! : 0.22	# : 0.16	" : 0.16	[ : 0.12	e : 0.10	= : 0.08	c : 0.04	b : 0.02	f : 0.02	a : 0.02	d : 0.02	g : 0.02	
d : 0.48	e : 0.12	c : 0.08	" : 0.06	# : 0.06	! : 0.06	[ : 0.04	= : 0.04	x : 0.02	f : 0.02	
d : 0.53	c : 0.26	e : 0.10	= : 0.04	x : 0.02	" : 0.02	f : 0.02	
d : 0.53	c : 0.26	e : 0.10	= : 0.04	x : 0.02	b : 0.02	f : 0.02	
d : 0.51	c : 0.18	e : 0.10	o : 0.08	= : 0.04	x : 0.02	a : 0.02	b : 0.02	f : 0.02	
n : 0.53	o : 0.28	d : 0.04	e : 0.04	l : 0.04	x : 0.02	q : 0.02	= : 0.02	
n : 0.55	o : 0.28	m : 0.06	l : 0.06	x : 0.02	q : 0.02	
n : 0.55	o : 0.28	m : 0.06	l : 0.06	x : 0.02	q : 0.02	
n : 0.55	o : 0.28	m : 0.06	x : 0.02	q : 0.02	l : 0.02	f : 0.02	d : 0.02	
n : 0.55	o : 0.28	m : 0.06	x : 0.02	q : 0.02	e : 0.02	f : 0.02	d : 0.02	
d : 0.38	o : 0.20	c : 0.18	e : 0.06	= : 0.04	x : 0.02	a : 0.02	b : 0.02	q : 0.02	f : 0.02	n : 0.02	
d : 0.51	c : 0.24	e : 0.10	= : 0.04	x : 0.02	] : 0.02	b : 0.02	q : 0.02	f : 0.02	
d : 0.48	c : 0.26	e : 0.10	= : 0.04	x : 0.02	3 : 0.02	q : 0.02	f : 0.02	] : 0.02	
d : 0.55	e : 0.10	c : 0.08	= : 0.06	4 : 0.04	2 : 0.04	3 : 0.04	x : 0.02	] : 0.02	f : 0.02	i : 0.02	
] : 0.22	d : 0.18	3 : 0.12	4 : 0.08	2 : 0.08	e : 0.08	= : 0.08	6 : 0.02	g : 0.02	x : 0.02	5 : 0.02	c : 0.02	a : 0.02	i : 0.02	
d : 0.10	3 : 0.10	2 : 0.10	= : 0.10	4 : 0.08	e : 0.08	b : 0.08	i : 0.06	c : 0.06	] : 0.06	a : 0.04	f : 0.04	6 : 0.02	g : 0.02	x : 0.02	5 : 0.02	
= : 0.12	d : 0.10	b : 0.10	] : 0.08	4 : 0.08	e : 0.08	3 : 0.08	c : 0.08	i : 0.06	2 : 0.06	a : 0.04	f : 0.04	6 : 0.02	g : 0.02	5 : 0.02	
= : 0.20	e : 0.12	d : 0.10	c : 0.10	f : 0.08	] : 0.08	i : 0.06	g : 0.06	3 : 0.04	4 : 0.04	2 : 0.04	6 : 0.02	5 : 0.02	b : 0.02	
= : 0.22	e : 0.14	d : 0.10	g : 0.08	f : 0.08	i : 0.06	2 : 0.06	c : 0.06	3 : 0.06	] : 0.04	6 : 0.02	5 : 0.02	h : 0.02	a : 0.02	
= : 0.22	e : 0.16	g : 0.10	f : 0.08	d : 0.08	i : 0.06	c : 0.06	3 : 0.06	] : 0.04	b : 0.04	h : 0.04	6 : 0.02	2 : 0.02	
= : 0.20	e : 0.12	g : 0.12	c : 0.08	i : 0.08	f : 0.08	d : 0.08	] : 0.06	b : 0.06	3 : 0.04	h : 0.04	4 : 0.02	
= : 0.20	g : 0.14	c : 0.10	e : 0.10	] : 0.10	i : 0.08	2 : 0.06	h : 0.06	f : 0.04	b : 0.04	3 : 0.02	4 : 0.02	d : 0.02	
= : 0.20	c : 0.14	g : 0.14	h : 0.08	2 : 0.08	] : 0.06	i : 0.06	e : 0.06	4 : 0.04	f : 0.04	b : 0.04	3 : 0.02	d : 0.02	
= : 0.20	g : 0.14	c : 0.12	] : 0.10	a : 0.08	h : 0.08	i : 0.06	e : 0.06	3 : 0.04	4 : 0.04	d : 0.02	b : 0.02	2 : 0.02	
= : 0.20	c : 0.12	g : 0.12	e : 0.08	h : 0.08	] : 0.08	d : 0.06	3 : 0.06	: : 0.04	4 : 0.04	a : 0.04	2 : 0.04	i : 0.02	
= : 0.18	] : 0.12	c : 0.10	e : 0.10	g : 0.10	d : 0.08	h : 0.08	3 : 0.06	2 : 0.06	: : 0.04	4 : 0.04	i : 0.02	
= : 0.16	e : 0.16	d : 0.14	c : 0.10	g : 0.08	: : 0.06	h : 0.06	a : 0.04	b : 0.04	] : 0.02	F : 0.02	E : 0.02	i : 0.02	4 : 0.02	3 : 0.02	2 : 0.02	

#score	758.7914831988878
#seq	49
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_CDS_m3_run1.txt

#BEAR
b[ddddqqqqqqqqdddd]b	chr19:36145430-36145672(+)$1	242	52	72	13.5567
"""cccqqqqqqqqccc333	chr17:79994055-79994280(-)$1	225	150	170	15.8943
ggggggqqqqqqqqgggggg	chr15:64448138-64448366(-)$1	228	185	205	15.0184
"""cccqqqqqqqqccc22c	chr4:39459913-39460126(-)$1	213	75	95	15.4178
===[bbqqqqqqqqbb====	chr4:74286708-74286911(+)$1	203	93	113	14.4609
ffffffqqqqqqqqffffff	chr14:103986155-103986475(-)$1	320	155	175	14.4253
ee[cccqqqqqqqqccc]ee	chr19:42365087-42365321(+)$1	234	180	200	15.4254
eeee[aqqqqqqqqa]eeee	chr2:242758045-242758286(+)$1	241	98	118	14.1914
ggddddqqqqqqqqdddd]g	chr11:33731428-33731778(-)$1	350	43	63	13.9879
Fbbcccqqqqqqqqccc]bb	chr4:110661893-110662169(-)$1	276	67	87	14.1324
======qqqqqqqq======	chr3:49395414-49395811(-)$1	397	181	201	15.1279
ffffffqqqqqqqqffffff	chr12:9220256-9220508(-)$1	252	96	116	14.4253
ffffffqqqqqqqqffffff	chr3:52842569-52842809(+)$1	240	161	181	14.4253
hh[cccqqqqqqqqccc22h	chr6:31604761-31605007(+)$1	246	118	138	14.8127
ffffffqqqqqqqqffffff	chr17:80015705-80016016(-)$1	311	233	253	14.4253
"""cccqqqqqqqqccc333	chr6:41756881-41757143(+)$1	262	185	205	15.8943
dd!!bbqqqqqqqqbb22dd	chr8:146017058-146017271(-)$1	213	77	97	13.2976
ffffffqqqqqqqqffffff	chr3:48481711-48481920(+)$1	209	100	120	14.4253
ggggggqqqqqqqqgggggg	chr5:1815924-1816181(+)$1	257	137	157	15.0184
Geeeeeqqqqqqqqeeeee:	chr2:98263427-98263673(+)$1	246	71	91	12.6664
[eeeeeqqqqqqqqeeeee]	chr5:150404908-150405127(+)$1	219	51	71	14.2086
a!!cccqqqqqqqqccc22a	chr15:79214329-79214621(-)$1	292	70	90	15.4440
"""cccqqqqqqqqccc333	chr19:49611411-49611769(+)$1	358	73	93	15.8943
[bbcccqqqqqqqqccc]bb	chr16:85834731-85834990(+)$1	259	15	35	14.6178
ggggggqqqqqqqqgggggg	chr17:79994766-79994988(-)$1	222	46	66	15.0184
f!!cccqqqqqqqqccc333	chr1:153604077-153604395(+)$1	318	95	115	15.9881
gggggaqqqqqqqqa]gggg	chr14:77935458-77935781(+)$1	323	89	109	14.9747
feeeeeqqqqqqqqeeeee2	chr7:54820005-54820214(-)$1	209	181	201	13.9576
ffffffqqqqqqqqffffff	chr20:60884368-60884599(-)$1	231	13	33	14.4253
ccddddqqqqqqqqdddd]c	chr17:7307214-7307504(-)$1	290	157	177	13.7696
dddd[aqqqqqqqqa]dddd	chr3:184052587-184052823(+)$1	236	173	193	13.5672
ggggggqqqqqqqqgggggg	chr9:117094048-117094309(+)$1	261	177	197	15.0184
dddd[aqqqqqqqqa]dddd	chr17:18148203-18148601(-)$1	398	337	357	13.5672
dd!!bbqqqqqqqqbb]ddd	chr22:24953531-24953801(+)$1	270	51	71	13.4028
ffffffqqqqqqqqffffff	chr7:99057609-99057917(-)$1	308	69	89	14.4253
===[bbqqqqqqqqbb====	chr4:74286711-74286927(+)$1	216	90	110	14.4609
ffff[aqqqqqqqqa]ffff	chr17:73132013-73132320(-)$1	307	56	76	14.4803
"""cccqqqqqqqqccc333	chr2:178083919-178084142(+)$1	223	166	186	15.8943
ggggggqqqqqqqqgggggg	chr22:38352679-38352950(+)$1	271	217	237	15.0184
==!!bbqqqqqqqqbb4444	chr5:135397088-135397321(+)$1	233	92	112	14.3149
""ddddqqqqqqqqddddgg	chr17:39679986-39680298(-)$1	312	228	248	13.9373
[eeeeeqqqqqqqqeeeee]	chr5:149781432-149781699(-)$1	267	176	196	14.2086
ffffffqqqqqqqqffffff	chr3:49052863-49053173(+)$1	310	246	266	14.4253
dddcccqqqqqqqqccc]dd	chr6:31919097-31919350(+)$1	253	96	116	14.7000
eee[bbqqqqqqqqbb]eee	chr20:23614421-23614714(-)$1	293	184	204	13.6825
cc[cccqqqqqqqqccc]cc	chr2:98263473-98263703(+)$1	230	164	184	15.5172
ggggggqqqqqqqqgggggg	chr20:2451233-2451524(-)$1	291	234	254	15.0184
bb[cccqqqqqqqqccc]bb	chr6:31807266-31807549(+)$1	283	148	168	14.7850
c[ddddqqqqqqqqdddd]c	chr1:44443555-44443801(+)$1	246	15	35	13.9066
a!!cccqqqqqqqqccc22a	chr15:79214421-79214647(-)$1	226	96	116	15.4440
+eeeeeqqqqqqqqeeeee2	chr3:49159039-49159308(-)$1	269	110	130	13.2914
b[ddddqqqqqqqqddddbb	chr6:33384397-33384655(-)$1	258	13	33	13.2225
ggggggqqqqqqqqgggggg	chr19:5691321-5691544(+)$1	223	128	148	15.0184
[bbcccqqqqqqqqccc]bb	chr2:98264365-98264664(+)$1	299	166	186	14.6178
ee[cccqqqqqqqqccc22e	chr3:48481590-48481823(+)$1	233	122	142	15.2342
fcccbbqqqqqqqqbb]ccc	chr15:90328394-90328694(-)$1	300	136	156	13.8355
ee[cccqqqqqqqqccc]ee	chr12:6979336-6979545(+)$1	209	126	146	15.4254
fffffaqqqqqqqqa]ffff	chr15:72636166-72636582(-)$1	416	317	337	14.4942
ggggggqqqqqqqqgggggg	chr5:1815864-1816124(+)$1	260	197	217	15.0184
ffffffqqqqqqqqffffff	chr12:9220308-9220535(-)$1	227	123	143	14.4253
dd[cccqqqqqqqqccc]dd	chr11:64812488-64812808(-)$1	320	216	236	15.0394
bb[cccqqqqqqqqccc]bb	chr12:56511165-56511369(+)$1	204	129	149	14.7850
!a[cccqqqqqqqqccca22	chr11:840361-840581(-)$1	220	178	198	15.2635
!eeeeeqqqqqqqqeeeee2	chr6:29913127-29913368(+)$1	241	164	184	14.0487
[eeeeeqqqqqqqqeeeee4	chr6:43128482-43128735(+)$1	253	189	209	14.1803

#otherMatches

#Seq PSSM
CUGUCAGAAGGCAAUGACCG	chr19:36145430-36145672(+)$1	242	52	72	13.5567
ACCUGGAGUGACCCCCACAA	chr17:79994055-79994280(-)$1	225	150	170	15.8943
CCCUGUAGUCCGCCACAGGG	chr15:64448138-64448366(-)$1	228	185	205	15.0184
UAUUCUCAGCAAUCAGACUG	chr4:39459913-39460126(-)$1	213	75	95	15.4178
UUUUCAGCCUACCAUGAGAA	chr4:74286708-74286911(+)$1	203	93	113	14.4609
GGCUUCUCAGAGGUGGAGCU	chr14:103986155-103986475(-)$1	320	155	175	14.4253
CUACACGCGAGCUGGUGAGG	chr19:42365087-42365321(+)$1	234	180	200	15.4254
CCCUGGGUGAUCUACGAGGG	chr2:242758045-242758286(+)$1	241	98	118	14.1914
AGAGAAAACAGUUCUUCUGC	chr11:33731428-33731778(-)$1	350	43	63	13.9879
GACUGGAUUAGCUACCAUGU	chr4:110661893-110662169(-)$1	276	67	87	14.1324
GAGCCUGUGAGCCUGGGCUC	chr3:49395414-49395811(-)$1	397	181	201	15.1279
CAAGGCUGAAAAGUGCUUUG	chr12:9220256-9220508(-)$1	252	96	116	14.4253
CCGGAUUUUAUGGCAUCUGG	chr3:52842569-52842809(+)$1	240	161	181	14.4253
GACCUGGAUCAUCACGGACU	chr6:31604761-31605007(+)$1	246	118	138	14.8127
AAGUGAACAAUAAAUCAUUU	chr17:80015705-80016016(-)$1	311	233	253	14.4253
CCAAGUAGGUAAGCACUGAA	chr6:41756881-41757143(+)$1	262	185	205	15.8943
AUUCACACGGGCCAGUUUGU	chr8:146017058-146017271(-)$1	213	77	97	13.2976
GGUGGCAAGAAGAAGCCACU	chr3:48481711-48481920(+)$1	209	100	120	14.4253
CCUGUGAGCAUUUCCGCGGG	chr5:1815924-1816181(+)$1	257	137	157	15.0184
CAGCGUCAUAAUUCACGUUA	chr2:98263427-98263673(+)$1	246	71	91	12.6664
UGGGGAGGAGUACAUCCCCU	chr5:150404908-150405127(+)$1	219	51	71	14.2086
CCAGGUACUUCCUCAUCGAG	chr15:79214329-79214621(-)$1	292	70	90	15.4440
gaccgggaucgugaccguga	chr19:49611411-49611769(+)$1	358	73	93	15.8943
AAGAAGACUAAUUCCUUGCU	chr16:85834731-85834990(+)$1	259	15	35	14.6178
UGUGCCGCUUGCUGGGCACA	chr17:79994766-79994988(-)$1	222	46	66	15.0184
GGCCCAGAAGGAUGUGGAUG	chr1:153604077-153604395(+)$1	318	95	115	15.9881
GAGGGCAUUAAACAGACCUU	chr14:77935458-77935781(+)$1	323	89	109	14.9747
AAUACAAAUUUGCCUGUAUG	chr7:54820005-54820214(-)$1	209	181	201	13.9576
GUGGGUCUCUAGCUGCCCAC	chr20:60884368-60884599(-)$1	231	13	33	14.4253
CUUAGGCUUCGCUUCCUACG	chr17:7307214-7307504(-)$1	290	157	177	13.7696
CUGCAGGGGGGCGGCAGCAG	chr3:184052587-184052823(+)$1	236	173	193	13.5672
GGACAGUGCCCACCUUGUCC	chr9:117094048-117094309(+)$1	261	177	197	15.0184
ACUCUCUCCACAGUGUGAGU	chr17:18148203-18148601(-)$1	398	337	357	13.5672
AGACUCUGAAAGAUGAACUG	chr22:24953531-24953801(+)$1	270	51	71	13.4028
AGUGGGUAUUUUUUCUCACU	chr7:99057609-99057917(-)$1	308	69	89	14.4253
UUUUCAGCCUACCAUGAGAA	chr4:74286711-74286927(+)$1	216	90	110	14.4609
UGGCCCCGGCCCCAGUGCCA	chr17:73132013-73132320(-)$1	307	56	76	14.4803
GGAACUGUUCACUGAGUGUA	chr2:178083919-178084142(+)$1	223	166	186	15.8943
AUCGUCUGACAGGUGAUGAU	chr22:38352679-38352950(+)$1	271	217	237	15.0184
CUCUUCAGCCAACAGACCUC	chr5:135397088-135397321(+)$1	233	92	112	14.3149
GAUUGCCACCUACCGCAGCC	chr17:39679986-39680298(-)$1	312	228	248	13.9373
CAGCCUCCAACACAAGGCUC	chr5:149781432-149781699(-)$1	267	176	196	14.2086
ACAUCUGACCAAAGAGGUGU	chr3:49052863-49053173(+)$1	310	246	266	14.4253
CUCGGUUCCUUUGUACUGGA	chr6:31919097-31919350(+)$1	253	96	116	14.7000
UGCCUAUCACCUCUUAUGCA	chr20:23614421-23614714(-)$1	293	184	204	13.6825
ACUUAUGGCCUUGGAUGUGU	chr2:98263473-98263703(+)$1	230	164	184	15.5172
UUGUGGAGUGGGAACCGCGA	chr20:2451233-2451524(-)$1	291	234	254	15.0184
UUGGGGGAAAAAUGCCUGAA	chr6:31807266-31807549(+)$1	283	148	168	14.7850
GCUAGAUGUCAUCUUCUAUC	chr1:44443555-44443801(+)$1	246	15	35	13.9066
CCAGGUACUUCCUCAUCGAG	chr15:79214421-79214647(-)$1	226	96	116	15.4440
ACGGGCAGGAAAUAGUCUGG	chr3:49159039-49159308(-)$1	269	110	130	13.2914
CUGGGCAGUCUAGGGCUUGC	chr6:33384397-33384655(-)$1	258	13	33	13.2225
UUUAUCAAGAAAAGGGUAGG	chr19:5691321-5691544(+)$1	223	128	148	15.0184
AGCCCAUUACAAGCUGGUGC	chr2:98264365-98264664(+)$1	299	166	186	14.6178
GGCCGCGAAGGUAAGUGUUC	chr3:48481590-48481823(+)$1	233	122	142	15.2342
CGGCCCCCAUGCAAGGUGCC	chr15:90328394-90328694(-)$1	300	136	156	13.8355
CAGCCAGCCUGAUGUGGAUG	chr12:6979336-6979545(+)$1	209	126	146	15.4254
GCAUUCAAUAAAGAGUAAUG	chr15:72636166-72636582(-)$1	416	317	337	14.4942
CCUGUGAGCAUUUCCGCGGG	chr5:1815864-1816124(+)$1	260	197	217	15.0184
CAAGGCUGAAAAGUGCUUUG	chr12:9220308-9220535(-)$1	227	123	143	14.4253
GUGGCAAGCCCUAAUGCAAC	chr11:64812488-64812808(-)$1	320	216	236	15.0394
AGAGGUCCAAGUAAACCGCU	chr12:56511165-56511369(+)$1	204	129	149	14.7850
AGCUGCUCAAUUAUGCACCC	chr11:840361-840581(-)$1	220	178	198	15.2635
UUGAAGAACCCUGACUUUGU	chr6:29913127-29913368(+)$1	241	164	184	14.0487
AGCUCACAGCAUGAUGGGCA	chr6:43128482-43128735(+)$1	253	189	209	14.1803

#DB
(.((((........)))).)	chr19:36145430-36145672(+)$1	1	52	72	13.5567
...(((........)))...	chr17:79994055-79994280(-)$1	1	150	170	15.8943
((((((........))))))	chr15:64448138-64448366(-)$1	1	185	205	15.0184
...(((........)))..)	chr4:39459913-39460126(-)$1	1	75	95	15.4178
(((.((........))))))	chr4:74286708-74286911(+)$1	1	93	113	14.4609
((((((........))))))	chr14:103986155-103986475(-)$1	1	155	175	14.4253
((.(((........))).))	chr19:42365087-42365321(+)$1	1	180	200	15.4254
((((.(........).))))	chr2:242758045-242758286(+)$1	1	98	118	14.1914
((((((........)))).)	chr11:33731428-33731778(-)$1	1	43	63	13.9879
((((((........))).))	chr4:110661893-110662169(-)$1	1	67	87	14.1324
((((((........))))))	chr3:49395414-49395811(-)$1	1	181	201	15.1279
((((((........))))))	chr12:9220256-9220508(-)$1	1	96	116	14.4253
((((((........))))))	chr3:52842569-52842809(+)$1	1	161	181	14.4253
((.(((........)))..)	chr6:31604761-31605007(+)$1	1	118	138	14.8127
((((((........))))))	chr17:80015705-80016016(-)$1	1	233	253	14.4253
...(((........)))...	chr6:41756881-41757143(+)$1	1	185	205	15.8943
((..((........))..))	chr8:146017058-146017271(-)$1	1	77	97	13.2976
((((((........))))))	chr3:48481711-48481920(+)$1	1	100	120	14.4253
((((((........))))))	chr5:1815924-1816181(+)$1	1	137	157	15.0184
((((((........))))).	chr2:98263427-98263673(+)$1	1	71	91	12.6664
.(((((........))))).	chr5:150404908-150405127(+)$1	1	51	71	14.2086
(..(((........)))..)	chr15:79214329-79214621(-)$1	1	70	90	15.4440
...(((........)))...	chr19:49611411-49611769(+)$1	1	73	93	15.8943
.(((((........))).))	chr16:85834731-85834990(+)$1	1	15	35	14.6178
((((((........))))))	chr17:79994766-79994988(-)$1	1	46	66	15.0184
(..(((........)))...	chr1:153604077-153604395(+)$1	1	95	115	15.9881
((((((........).))))	chr14:77935458-77935781(+)$1	1	89	109	14.9747
((((((........))))).	chr7:54820005-54820214(-)$1	1	181	201	13.9576
((((((........))))))	chr20:60884368-60884599(-)$1	1	13	33	14.4253
((((((........)))).)	chr17:7307214-7307504(-)$1	1	157	177	13.7696
((((.(........).))))	chr3:184052587-184052823(+)$1	1	173	193	13.5672
((((((........))))))	chr9:117094048-117094309(+)$1	1	177	197	15.0184
((((.(........).))))	chr17:18148203-18148601(-)$1	1	337	357	13.5672
((..((........)).)))	chr22:24953531-24953801(+)$1	1	51	71	13.4028
((((((........))))))	chr7:99057609-99057917(-)$1	1	69	89	14.4253
(((.((........))))))	chr4:74286711-74286927(+)$1	1	90	110	14.4609
((((.(........).))))	chr17:73132013-73132320(-)$1	1	56	76	14.4803
...(((........)))...	chr2:178083919-178084142(+)$1	1	166	186	15.8943
((((((........))))))	chr22:38352679-38352950(+)$1	1	217	237	15.0184
((..((........))....	chr5:135397088-135397321(+)$1	1	92	112	14.3149
..((((........))))))	chr17:39679986-39680298(-)$1	1	228	248	13.9373
.(((((........))))).	chr5:149781432-149781699(-)$1	1	176	196	14.2086
((((((........))))))	chr3:49052863-49053173(+)$1	1	246	266	14.4253
((((((........))).))	chr6:31919097-31919350(+)$1	1	96	116	14.7000
(((.((........)).)))	chr20:23614421-23614714(-)$1	1	184	204	13.6825
((.(((........))).))	chr2:98263473-98263703(+)$1	1	164	184	15.5172
((((((........))))))	chr20:2451233-2451524(-)$1	1	234	254	15.0184
((.(((........))).))	chr6:31807266-31807549(+)$1	1	148	168	14.7850
(.((((........)))).)	chr1:44443555-44443801(+)$1	1	15	35	13.9066
(..(((........)))..)	chr15:79214421-79214647(-)$1	1	96	116	15.4440
.(((((........))))).	chr3:49159039-49159308(-)$1	1	110	130	13.2914
(.((((........))))))	chr6:33384397-33384655(-)$1	1	13	33	13.2225
((((((........))))))	chr19:5691321-5691544(+)$1	1	128	148	15.0184
.(((((........))).))	chr2:98264365-98264664(+)$1	1	166	186	14.6178
((.(((........)))..)	chr3:48481590-48481823(+)$1	1	122	142	15.2342
)(((((........)).)))	chr15:90328394-90328694(-)$1	1	136	156	13.8355
((.(((........))).))	chr12:6979336-6979545(+)$1	1	126	146	15.4254
((((((........).))))	chr15:72636166-72636582(-)$1	1	317	337	14.4942
((((((........))))))	chr5:1815864-1816124(+)$1	1	197	217	15.0184
((((((........))))))	chr12:9220308-9220535(-)$1	1	123	143	14.4253
((.(((........))).))	chr11:64812488-64812808(-)$1	1	216	236	15.0394
((.(((........))).))	chr12:56511165-56511369(+)$1	1	129	149	14.7850
.(.(((........))))..	chr11:840361-840581(-)$1	1	178	198	15.2635
.(((((........))))).	chr6:29913127-29913368(+)$1	1	164	184	14.0487
.(((((........))))).	chr6:43128482-43128735(+)$1	1	189	209	14.1803

#PSSM
f : 0.21	g : 0.15	" : 0.09	d : 0.09	e : 0.07	[ : 0.07	b : 0.06	= : 0.06	c : 0.04	a : 0.03	! : 0.03	F : 0.01	h : 0.01	G : 0.01	+ : 0.01	
e : 0.18	f : 0.16	g : 0.15	" : 0.09	d : 0.09	b : 0.07	= : 0.06	[ : 0.04	! : 0.04	c : 0.04	h : 0.01	a : 0.01	
f : 0.16	d : 0.13	g : 0.13	[ : 0.13	e : 0.13	! : 0.09	" : 0.07	= : 0.04	b : 0.04	c : 0.01	
c : 0.33	f : 0.16	g : 0.13	d : 0.12	e : 0.12	[ : 0.04	! : 0.04	= : 0.01	
c : 0.32	f : 0.15	g : 0.13	b : 0.10	e : 0.10	d : 0.09	[ : 0.06	= : 0.01	
c : 0.32	f : 0.13	g : 0.12	b : 0.10	e : 0.10	d : 0.09	a : 0.09	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.32	f : 0.13	g : 0.12	b : 0.10	e : 0.10	d : 0.09	a : 0.09	= : 0.01	
c : 0.32	f : 0.13	g : 0.12	b : 0.10	e : 0.10	d : 0.09	] : 0.09	= : 0.01	
c : 0.32	f : 0.16	g : 0.13	d : 0.12	e : 0.12	= : 0.04	] : 0.04	2 : 0.01	4 : 0.01	
f : 0.16	] : 0.15	d : 0.13	g : 0.13	e : 0.13	2 : 0.09	3 : 0.07	= : 0.04	4 : 0.01	c : 0.01	a : 0.01	
f : 0.16	e : 0.16	g : 0.15	2 : 0.09	b : 0.09	d : 0.09	3 : 0.07	] : 0.06	= : 0.04	c : 0.03	4 : 0.01	
g : 0.16	f : 0.16	b : 0.10	d : 0.09	3 : 0.07	c : 0.07	e : 0.07	2 : 0.06	= : 0.04	] : 0.03	a : 0.03	4 : 0.03	h : 0.01	: : 0.01	

#score	947.0058885702618
#seq	65
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_UTR_m2_run1.txt

#BEAR
:gggggggtttttttttttggggggg	chr6:34213426-34213689(+)$1	263	182	208	22.3545
dafffffftttttttttttffffff2	chr19:39330799-39331130(-)$1	331	220	246	21.9724
iiiiiiiuuuuuuuuuuuuiiiiiii	chr1:224621755-224622012(-)$1	257	153	179	24.2919
::eeeeewwwwwwwwwwwwwweeeee	chr16:88941872-88942167(-)$1	295	44	70	20.8813
"""dddduuuuuuuuuuuudddd333	chr11:66044389-66044655(+)$1	266	30	56	25.0534
eeee[bbuuuuuuuuuuuubbeeeee	chr17:6917568-6917890(+)$1	322	156	182	22.8966
!!eeeeeuuuuuuuuuuuueeeee33	chr6:33384283-33384564(-)$1	281	212	238	25.0122
iiiiiiivvvvvvvvvvvvviiiiii	chr1:31342460-31342739(-)$1	279	125	151	24.0142
[bbddddtttttttttttdddd333b	chr1:27107240-27107592(+)$1	352	68	94	22.4964
cc!!cccuuuuuuuuuuuuccc]ccc	chr6:26205090-26205347(+)$1	257	12	38	24.1352
gggggggvvvvvvvvvvvvvgggggg	chr19:34890939-34891232(+)$1	293	204	230	23.9515
g[cccbbuuuuuuuuuuuubb]cccg	chr5:175958965-175959225(-)$1	260	74	100	23.2407
dddddddwwwwwwwwwwwwwwdddd]	chr22:20937026-20937301(+)$1	275	99	125	21.8856
"""bb[auuuuuuuuuuuua]bb333	chr2:68479525-68479770(-)$1	245	87	113	23.7582
iiiiiiivvvvvvvvvvvvviiiiii	chr16:30368915-30369165(-)$1	250	118	144	24.0142
=======wwwwwwwwwwwwww=====	chr9:134373061-134373318(+)$1	257	26	52	23.0430
b[fffffftttttttttttffffff3	chr3:57582777-57583120(-)$1	343	157	183	22.4115
##eeeeeyyyyyyyyyyyyyyyyeee	chr19:6441467-6441763(-)$1	296	91	117	21.9991
bb[dddduuuuuuuuuuuudddd]bb	chr7:143079339-143079624(+)$1	285	181	207	23.4550
e!!eeeeettttttttttteeeeeee	chr11:61171916-61172209(-)$1	293	99	125	23.5444
dddddddtttttttttttddddgggg	chr19:49469954-49470186(+)$1	232	67	93	22.4780
gggggggvvvvvvvvvvvvvgggggg	chr6:42906614-42906918(+)$1	304	21	47	23.9515
ccc[cccuuuuuuuuuuuucccccc4	chr19:41859106-41859356(-)$1	250	214	240	24.0878
bbeeeeevvvvvvvvvvvvveeeeeE	chr12:53845981-53846229(+)$1	248	177	203	22.5975
"""ddddtttttttttttdddd4444	chr9:131910196-131910476(+)$1	280	98	124	23.3604
eeeecccwwwwwwwwwwwwwwccc]e	chr16:67580394-67580713(+)$1	319	85	111	22.3114
ccc[ddddtttttttttttdddd]cc	chr9:134135215-134135508(-)$1	293	162	188	23.1001
dd[eeeeettttttttttteeeeedd	chr20:35090551-35090809(+)$1	258	150	176	22.8981
[cccccctttttttttttccc]cccc	chr16:227352-227598(+)$1	246	35	61	22.7743
==eeeeeuuuuuuuuuuuueeeee::	chr8:11695930-11696191(+)$1	261	130	156	22.7172
gggggggvvvvvvvvvvvvvgggggg	chr5:179227429-179227689(-)$1	260	228	254	23.9515
dd[eeeeettttttttttteeeee]d	chr2:97541753-97542005(-)$1	252	205	231	23.2091
d:eeeeeuuuuuuuuuuuueeeee::	chr17:42397046-42397286(-)$1	240	114	140	21.5860
eeeeddddtttttttttttdddd444	chr3:50296295-50296610(+)$1	315	211	237	23.1733
b[ddddwwwwwwwwwwwwwwdddd]b	chr17:20905224-20905486(-)$1	262	212	238	22.1319
!!bb!!auuuuuuuuuuuua22bb]f	chr11:67053448-67053676(+)$1	228	28	54	22.8696
gggggggvvvvvvvvvvvvvgggggg	chr17:39910995-39911260(-)$1	265	143	169	23.9515
$$$ddddyyyyyyyyyyyyyyyyddd	chr3:184035046-184035309(+)$1	263	7	33	21.0743
b"""cccuuuuuuuuuuuuccc333b	chr21:44473261-44473538(-)$1	277	244	270	24.3188
d[bb[bbuuuuuuuuuuuubb]bb]d	chr8:103876026-103876364(-)$1	338	103	129	22.0889
e[eeeeevvvvvvvvvvvvveeeee]	chr11:64534334-64534597(-)$1	263	49	75	24.2091
:gggggggtttttttttttggggggg	chr6:34213561-34213796(+)$1	235	47	73	22.3545
dd[eeeeettttttttttteeeee]d	chr2:97541554-97541833(-)$1	279	33	59	23.2091
F:eeeeeuuuuuuuuuuuueeeee::	chr12:7032014-7032291(+)$1	277	46	72	21.2445
eeeeddddtttttttttttdddd]ee	chr6:43479848-43480115(-)$1	267	77	103	22.9457
iiiiiiiitttttttttttiiiiiii	chr3:9879542-9879837(-)$1	295	235	261	23.1197
[a!!cccuuuuuuuuuuuuccc22ab	chr2:171822216-171822560(+)$1	344	305	331	23.8206
d!!cccvvvvvvvvvvvvvcccdddd	chr7:150730620-150730939(+)$1	319	224	250	23.0591
b[eeeeeyyyyyyyyyyyyyyyyeee	chr7:75933385-75933652(+)$1	267	180	206	21.8412
ggggggyyyyyyyyyyyyyyyygggg	chr19:14198671-14198974(-)$1	303	104	130	21.8893
!ffffffyyyyyyyyyyyyyyyyfff	chr19:59061812-59062134(+)$1	322	154	180	20.9778
ggggggguuuuuuuuuuuuggggggg	chr19:36128373-36128642(+)$1	269	90	116	24.1870
###dddduuuuuuuuuuuuddddfff	chrX:53559938-53560213(-)$1	275	74	100	24.2206
fffdddduuuuuuuuuuuudddd22f	chr5:176918316-176918592(-)$1	276	148	174	23.4700
!!cccyyyyyyyyyyyyyyyyccc33	chr7:127231362-127231713(+)$1	351	269	295	22.1704
%%%ddddvvvvvvvvvvvvvdddd22	chr11:45826875-45827163(+)$1	288	47	73	22.0639
c[ddddvvvvvvvvvvvvvdddd333	chr17:39911292-39911537(-)$1	245	128	154	23.8224
ccfffffftttttttttttffffff]	chr10:102106984-102107227(+)$1	243	130	156	22.1898
ggggggggtttttttttttggggggg	chr6:42988782-42989069(+)$1	287	218	244	23.1467
dffffffuuuuuuuuuuuuffffff0	chr22:38051738-38052017(+)$1	279	108	134	22.4955
e[ddddvvvvvvvvvvvvvdddd]ee	chr11:67053755-67054030(+)$1	275	154	180	23.1887
g[eeeeevvvvvvvvvvvvveeeee]	chr1:46744117-46744372(-)$1	255	133	159	24.3086
$$$ddddtttttttttttdddd4444	chrX:47445976-47446237(+)$1	261	170	196	22.7243
e[eeeeewwwwwwwwwwwwwweeeee	chr22:36863445-36863765(-)$1	320	138	164	22.7207
:a!!cccvvvvvvvvvvvvvccc22a	chr17:41167589-41167878(-)$1	289	116	142	23.0191
cc[ddddtttttttttttddddccc:	chr12:110784689-110784991(+)$1	302	83	109	22.1034
:ffffffuuuuuuuuuuuuffffff:	chr7:99704866-99705142(-)$1	276	195	221	21.3593
iiiiiiiwwwwwwwwwwwwwwiiiii	chr15:91426343-91426640(+)$1	297	195	221	22.7171
b[bb!!bbtttttttttttbb22bb]	chr15:89442428-89442733(-)$1	305	221	247	20.9265

#otherMatches

#Seq PSSM
UCUGUUCACAAACUACCUCUGGACAG	chr6:34213426-34213689(+)$1	263	182	208	22.3545
UCGGGGCCCAAGUCGCUACGGCCCCC	chr19:39330799-39331130(-)$1	331	220	246	21.9724
CGCUGCUGUCCCCCACCGAAGUAGCG	chr1:224621755-224622012(-)$1	257	153	179	24.2919
CCAGCAGGCCUCCCUGAAACACUGCU	chr16:88941872-88942167(-)$1	295	44	70	20.8813
CACCGUGCCCCUUUGUCCCCAUGUCA	chr11:66044389-66044655(+)$1	266	30	56	25.0534
GAGACUGAAUCCCUUCUCCCAUCUCU	chr17:6917568-6917890(+)$1	322	156	182	22.8966
CCCCCAAUAAAUCCCGUCUUUGGGUC	chr6:33384283-33384564(-)$1	281	212	238	25.0122
GGGUCUGCCAUUCCCUCCCCCAGGCC	chr1:31342460-31342739(-)$1	279	125	151	24.0142
CUGUUGCCCUUUAUUUAUGCAAAACC	chr1:27107240-27107592(+)$1	352	68	94	22.4964
CAAACGCAAGACAGUGACAGCGAUGG	chr6:26205090-26205347(+)$1	257	12	38	24.1352
UUGGCUGAAGUGUUUUUGUGCAGCUG	chr19:34890939-34891232(+)$1	293	204	230	23.9515
GAGCGCUUACCCUCCCAGCAGCCGCC	chr5:175958965-175959225(-)$1	260	74	100	23.2407
GCUCUGGCCCUGCCCCAUCUCCCAGU	chr22:20937026-20937301(+)$1	275	99	125	21.8856
UCCGCCCUCCCCUUUUUUCGUGCCUU	chr2:68479525-68479770(-)$1	245	87	113	23.7582
CUGGGGUCUCUGUCGCUCCUGCCCCA	chr16:30368915-30369165(-)$1	250	118	144	24.0142
AAGGUGCUUUACUGUUCACCUGCAUC	chr9:134373061-134373318(+)$1	257	26	52	23.0430
CCCUCUCGUUUAGUUUGCCUGGGAGC	chr3:57582777-57583120(-)$1	343	157	183	22.4115
AAGAUUAUCCACACCCCAGCCCUUAA	chr19:6441467-6441763(-)$1	296	91	117	21.9991
CCAUACCGCCCCCACCACAGGUACGG	chr7:143079339-143079624(+)$1	285	181	207	23.4550
GACGGAGGCCGCCCCACCCCCUUCCC	chr11:61171916-61172209(-)$1	293	99	125	23.5444
GGCCCCUUGCAAAGUAAUAGGGCUUC	chr19:49469954-49470186(+)$1	232	67	93	22.4780
CCUUGGCUGUGCCCUCUUCUGCCAAG	chr6:42906614-42906918(+)$1	304	21	47	23.9515
CCGUGGGAUACUGAGACACCCCCGGU	chr19:41859106-41859356(-)$1	250	214	240	24.0878
AGGUAAGCCUAAAAAUUUCCCUUGCG	chr12:53845981-53846229(+)$1	248	177	203	22.5975
AGAGGCCUUAGCUGUCCUGGCUGGUG	chr9:131910196-131910476(+)$1	280	98	124	23.3604
CAAUGAAAAUCUAAUAUAUUCUUCUG	chr16:67580394-67580713(+)$1	319	85	111	22.3114
AGCAGCCUUAACUUCCCUUGGGCGGC	chr9:134135215-134135508(-)$1	293	162	188	23.1001
UCUCCGAGCACCCCCACUUCUCGGGA	chr20:35090551-35090809(+)$1	258	150	176	22.8981
UGCUGACCUCCAAAUACCGUUAAGCU	chr16:227352-227598(+)$1	246	35	61	22.7743
GUACCUGACCACUCUCUCCCAGGUAA	chr8:11695930-11696191(+)$1	261	130	156	22.7172
CUCAGCAACCCGCCUGCCUGUGCUGA	chr5:179227429-179227689(-)$1	260	228	254	23.9515
GGAUGGGCCUCUCUGCCUCGCCCACC	chr2:97541753-97542005(-)$1	252	205	231	23.2091
UCGUGGGGAUCAUCACUUACCCACCC	chr17:42397046-42397286(-)$1	240	114	140	21.5860
CCCUGCCCUCCACAGAAUUGGGUUCC	chr3:50296295-50296610(+)$1	315	211	237	23.1733
UCUGCCUCUGCUUUACAUUUGGUGUA	chr17:20905224-20905486(-)$1	262	212	238	22.1319
CUGGCUGCCUCCACUCCCACUUCCCU	chr11:67053448-67053676(+)$1	228	28	54	22.8696
GGGACAGCUUCCUCACACCCCUGUCC	chr17:39910995-39911260(-)$1	265	143	169	23.9515
UUUUUGUCCACUUCCUUCUCUUUACA	chr3:184035046-184035309(+)$1	263	7	33	21.0743
ccucgugucuaacuuauuucacuuug	chr21:44473261-44473538(-)$1	277	244	270	24.3188
CCCGCGCCUUUCUUCUUUUGCCUGCG	chr8:103876026-103876364(-)$1	338	103	129	22.0889
UGAUGCCGCCACCACCUAUGGGCAUG	chr11:64534334-64534597(-)$1	263	49	75	24.2091
UCUGUUCACAAACUACCUCUGGACAG	chr6:34213561-34213796(+)$1	235	47	73	22.3545
GGAUGGGCCUCUCUGCCUCGCCCACC	chr2:97541554-97541833(-)$1	279	33	59	23.2091
CCCAGGGUGCCCAGAACUUCCCUGAU	chr12:7032014-7032291(+)$1	277	46	72	21.2445
UGGAGGGCCCCAACAUCCCGCCCAUC	chr6:43479848-43480115(-)$1	267	77	103	22.9457
ugcuugcuguguggcauugggcaagu	chr3:9879542-9879837(-)$1	295	235	261	23.1197
UGACGCCCCCCACUGCCAAGGCCCCC	chr2:171822216-171822560(+)$1	344	305	331	23.8206
ACUGAGUAAGCAUCCCCACCUCUGCC	chr7:150730620-150730939(+)$1	319	224	250	23.0591
CAUUUAUCUUCUGUUUUUCUCAAAUA	chr7:75933385-75933652(+)$1	267	180	206	21.8412
GGUGGUCUUUCCUCCCUCCCCUACCA	chr19:14198671-14198974(-)$1	303	104	130	21.8893
UGUCACCCCAUCCCCACUCCCCUGGU	chr19:59061812-59062134(+)$1	322	154	180	20.9778
GGCCAGGCACCCGCUCCCACCUGGCC	chr19:36128373-36128642(+)$1	269	90	116	24.1870
CCAGCUGCCCCAUCUUCCCCAGCGCA	chrX:53559938-53560213(-)$1	275	74	100	24.2206
ugucugucuUAUUUCCUUCACAGGUG	chr5:176918316-176918592(-)$1	276	148	174	23.4700
UUCCUUUUUUUUUUCUGUUUUGGGUG	chr7:127231362-127231713(+)$1	351	269	295	22.1704
cucggcaccucuucccacucugccac	chr11:45826875-45827163(+)$1	288	47	73	22.0639
UCCAGCCUCCCUGUCUCCAGCUGCCU	chr17:39911292-39911537(-)$1	245	128	154	23.8224
CGGCUAGCGCCGACAACCAGCUAGCG	chr10:102106984-102107227(+)$1	243	130	156	22.1898
AGauuuuauaaaaauuaauuaaaauC	chr6:42988782-42989069(+)$1	287	218	244	23.1467
CUCAGGACAAUCCUCUAUUUCCUGAC	chr22:38051738-38052017(+)$1	279	108	134	22.4955
UUGGCGCACCCUCCCCUCCCGUCUAC	chr11:67053755-67054030(+)$1	275	154	180	23.1887
UUCCUGCCUUCCCUCCUCAAGCAGGC	chr1:46744117-46744372(-)$1	255	133	159	24.3086
AUCUUUCUUCCGGACAAUGAAAUAAA	chrX:47445976-47446237(+)$1	261	170	196	22.7243
ACGCCUUUCAUCCCUCCUUCUAGGGC	chr22:36863445-36863765(-)$1	320	138	164	22.7207
UGUUGUGUUCCAUGUGCUUUCACCUC	chr17:41167589-41167878(-)$1	289	116	142	23.0191
GUCAGUAUUGUUUUGGUUUGCUACUU	chr12:110784689-110784991(+)$1	302	83	109	22.1034
CAGUCCCCCUCCAGCUCCAGGGACUC	chr7:99704866-99705142(-)$1	276	195	221	21.3593
GCCCGGCUGGUUUUGUAAGAUGCUGG	chr15:91426343-91426640(+)$1	297	195	221	22.7171
GAGGCAGCACCACCACACAGUCACCC	chr15:89442428-89442733(-)$1	305	221	247	20.9265

#DB
.(((((((...........)))))))	chr6:34213426-34213689(+)$1	1	182	208	22.3545
((((((((...........)))))).	chr19:39330799-39331130(-)$1	1	220	246	21.9724
(((((((............)))))))	chr1:224621755-224622012(-)$1	1	153	179	24.2919
..(((((..............)))))	chr16:88941872-88942167(-)$1	1	44	70	20.8813
...((((............))))...	chr11:66044389-66044655(+)$1	1	30	56	25.0534
((((.((............)))))))	chr17:6917568-6917890(+)$1	1	156	182	22.8966
..(((((............)))))..	chr6:33384283-33384564(-)$1	1	212	238	25.0122
(((((((.............))))))	chr1:31342460-31342739(-)$1	1	125	151	24.0142
.((((((...........))))...)	chr1:27107240-27107592(+)$1	1	68	94	22.4964
((..(((............))).)))	chr6:26205090-26205347(+)$1	1	12	38	24.1352
(((((((.............))))))	chr19:34890939-34891232(+)$1	1	204	230	23.9515
(.(((((............)).))))	chr5:175958965-175959225(-)$1	1	74	100	23.2407
(((((((..............)))).	chr22:20937026-20937301(+)$1	1	99	125	21.8856
...((.(............).))...	chr2:68479525-68479770(-)$1	1	87	113	23.7582
(((((((.............))))))	chr16:30368915-30369165(-)$1	1	118	144	24.0142
(((((((..............)))))	chr9:134373061-134373318(+)$1	1	26	52	23.0430
(.((((((...........)))))).	chr3:57582777-57583120(-)$1	1	157	183	22.4115
..(((((................)))	chr19:6441467-6441763(-)$1	1	91	117	21.9991
((.((((............)))).))	chr7:143079339-143079624(+)$1	1	181	207	23.4550
(..(((((...........)))))))	chr11:61171916-61172209(-)$1	1	99	125	23.5444
)))((((...........))))((((	chr19:49469954-49470186(+)$1	1	67	93	22.4780
(((((((.............))))))	chr6:42906614-42906918(+)$1	1	21	47	23.9515
(((.(((............)))))).	chr19:41859106-41859356(-)$1	1	214	240	24.0878
))(((((.............))))))	chr12:53845981-53846229(+)$1	1	177	203	22.5975
...((((...........))))....	chr9:131910196-131910476(+)$1	1	98	124	23.3604
(((((((..............))).)	chr16:67580394-67580713(+)$1	1	85	111	22.3114
(((.((((...........)))).))	chr9:134135215-134135508(-)$1	1	162	188	23.1001
((.(((((...........)))))))	chr20:35090551-35090809(+)$1	1	150	176	22.8981
.((((((...........))).))))	chr16:227352-227598(+)$1	1	35	61	22.7743
))(((((............)))))..	chr8:11695930-11696191(+)$1	1	130	156	22.7172
(((((((.............))))))	chr5:179227429-179227689(-)$1	1	228	254	23.9515
((.(((((...........))))).)	chr2:97541753-97542005(-)$1	1	205	231	23.2091
).(((((............)))))..	chr17:42397046-42397286(-)$1	1	114	140	21.5860
((((((((...........))))...	chr3:50296295-50296610(+)$1	1	211	237	23.1733
(.((((..............)))).)	chr17:20905224-20905486(-)$1	1	212	238	22.1319
..((..(............)..)).)	chr11:67053448-67053676(+)$1	1	28	54	22.8696
(((((((.............))))))	chr17:39910995-39911260(-)$1	1	143	169	23.9515
...((((................)))	chr3:184035046-184035309(+)$1	1	7	33	21.0743
(...(((............)))...)	chr21:44473261-44473538(-)$1	1	244	270	24.3188
(.((.((............)).)).)	chr8:103876026-103876364(-)$1	1	103	129	22.0889
(.(((((.............))))).	chr11:64534334-64534597(-)$1	1	49	75	24.2091
.(((((((...........)))))))	chr6:34213561-34213796(+)$1	1	47	73	22.3545
((.(((((...........))))).)	chr2:97541554-97541833(-)$1	1	33	59	23.2091
(.(((((............)))))..	chr12:7032014-7032291(+)$1	1	46	72	21.2445
((((((((...........)))).))	chr6:43479848-43480115(-)$1	1	77	103	22.9457
((((((((...........)))))))	chr3:9879542-9879837(-)$1	1	235	261	23.1197
.(..(((............)))..))	chr2:171822216-171822560(+)$1	1	305	331	23.8206
(..(((.............)))))))	chr7:150730620-150730939(+)$1	1	224	250	23.0591
(.(((((................)))	chr7:75933385-75933652(+)$1	1	180	206	21.8412
((((((................))))	chr19:14198671-14198974(-)$1	1	104	130	21.8893
.((((((................)))	chr19:59061812-59062134(+)$1	1	154	180	20.9778
(((((((............)))))))	chr19:36128373-36128642(+)$1	1	90	116	24.1870
...((((............)))))))	chrX:53559938-53560213(-)$1	1	74	100	24.2206
(((((((............))))..)	chr5:176918316-176918592(-)$1	1	148	174	23.4700
..(((................)))..	chr7:127231362-127231713(+)$1	1	269	295	22.1704
...((((.............))))..	chr11:45826875-45827163(+)$1	1	47	73	22.0639
(.((((.............))))...	chr17:39911292-39911537(-)$1	1	128	154	23.8224
((((((((...........)))))).	chr10:102106984-102107227(+)$1	1	130	156	22.1898
)(((((((...........)))))))	chr6:42988782-42989069(+)$1	1	218	244	23.1467
(((((((............)))))).	chr22:38051738-38052017(+)$1	1	108	134	22.4955
(.((((.............)))).))	chr11:67053755-67054030(+)$1	1	154	180	23.1887
(.(((((.............))))).	chr1:46744117-46744372(-)$1	1	133	159	24.3086
...((((...........))))....	chrX:47445976-47446237(+)$1	1	170	196	22.7243
(.(((((..............)))))	chr22:36863445-36863765(-)$1	1	138	164	22.7207
.(..(((.............)))..)	chr17:41167589-41167878(-)$1	1	116	142	23.0191
((.((((...........))))))).	chr12:110784689-110784991(+)$1	1	83	109	22.1034
.((((((............)))))).	chr7:99704866-99705142(-)$1	1	195	221	21.3593
(((((((..............)))))	chr15:91426343-91426640(+)$1	1	195	221	22.7171
(.((..((...........))..)).	chr15:89442428-89442733(-)$1	1	221	247	20.9265

#PSSM
d : 0.14	g : 0.13	e : 0.11	b : 0.10	c : 0.08	: : 0.07	i : 0.07	! : 0.05	" : 0.04	[ : 0.04	= : 0.02	# : 0.02	$ : 0.02	F : 0.01	f : 0.01	% : 0.01	
[ : 0.15	g : 0.13	c : 0.08	i : 0.07	! : 0.07	d : 0.07	" : 0.05	e : 0.05	f : 0.05	a : 0.04	: : 0.04	b : 0.04	= : 0.02	# : 0.02	$ : 0.02	% : 0.01	
e : 0.21	g : 0.13	f : 0.10	i : 0.07	! : 0.07	c : 0.07	d : 0.07	[ : 0.07	" : 0.05	b : 0.05	$ : 0.02	= : 0.01	# : 0.01	% : 0.01	
e : 0.27	d : 0.21	g : 0.13	f : 0.08	i : 0.07	c : 0.05	b : 0.05	! : 0.04	[ : 0.02	= : 0.01	" : 0.01	
d : 0.26	e : 0.21	c : 0.14	g : 0.13	f : 0.08	i : 0.07	[ : 0.02	! : 0.02	b : 0.01	= : 0.01	
d : 0.26	e : 0.21	g : 0.13	c : 0.11	f : 0.08	i : 0.07	b : 0.04	! : 0.02	[ : 0.01	= : 0.01	y : 0.01	
e : 0.21	d : 0.21	g : 0.11	c : 0.10	f : 0.08	i : 0.07	b : 0.05	v : 0.04	a : 0.02	y : 0.02	= : 0.01	w : 0.01	
u : 0.30	v : 0.20	w : 0.10	t : 0.08	y : 0.08	e : 0.05	g : 0.04	f : 0.04	d : 0.04	i : 0.01	b : 0.01	
t : 0.30	u : 0.30	v : 0.20	w : 0.10	y : 0.08	
t : 0.30	u : 0.30	v : 0.20	w : 0.10	y : 0.08	
t : 0.30	u : 0.30	v : 0.20	w : 0.10	y : 0.08	
t : 0.30	u : 0.30	v : 0.20	w : 0.10	y : 0.08	
t : 0.30	u : 0.30	v : 0.20	w : 0.10	y : 0.08	
t : 0.30	u : 0.30	v : 0.20	w : 0.10	y : 0.08	
t : 0.30	u : 0.30	v : 0.20	w : 0.10	y : 0.08	
t : 0.30	u : 0.30	v : 0.20	w : 0.10	y : 0.08	
t : 0.30	u : 0.30	v : 0.20	w : 0.10	y : 0.08	
t : 0.30	u : 0.30	v : 0.20	w : 0.10	y : 0.08	
u : 0.30	t : 0.21	v : 0.20	w : 0.10	y : 0.08	d : 0.07	c : 0.01	
d : 0.20	v : 0.15	e : 0.11	w : 0.10	c : 0.08	y : 0.08	f : 0.07	g : 0.05	b : 0.05	i : 0.02	a : 0.02	
d : 0.23	e : 0.15	g : 0.11	c : 0.10	w : 0.08	y : 0.08	f : 0.07	i : 0.05	b : 0.05	] : 0.01	2 : 0.01	
d : 0.24	e : 0.20	g : 0.11	c : 0.11	f : 0.07	i : 0.07	y : 0.07	] : 0.04	2 : 0.02	b : 0.01	= : 0.01	
e : 0.20	d : 0.18	g : 0.14	c : 0.10	f : 0.07	i : 0.07	y : 0.05	b : 0.04	3 : 0.02	4 : 0.02	2 : 0.02	] : 0.01	= : 0.01	
e : 0.23	g : 0.14	f : 0.10	c : 0.10	i : 0.07	3 : 0.07	d : 0.07	] : 0.05	4 : 0.04	b : 0.04	2 : 0.04	= : 0.01	
e : 0.15	g : 0.14	f : 0.10	3 : 0.10	c : 0.08	] : 0.08	i : 0.07	d : 0.05	4 : 0.04	: : 0.04	2 : 0.04	b : 0.02	= : 0.01	a : 0.01	
g : 0.15	e : 0.13	3 : 0.08	d : 0.08	i : 0.07	b : 0.07	] : 0.07	: : 0.07	4 : 0.05	f : 0.05	c : 0.04	2 : 0.02	= : 0.01	E : 0.01	0 : 0.01	a : 0.01	

#score	1582.5501554176997
#seq	69
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159VOF_U2AF2_CDS_m2_run1.txt

#BEAR
dd[ddddqqqqqqqqdddddd	chr16:81691244-81691535(+)$1	291	228	249	15.5648
d!!ddddqqqqqqqqdddd22	chr7:22175621-22175858(-)$1	237	185	206	16.2801
dd"""bbqqqqqqqqbb4444	chr9:13186274-13186586(-)$1	312	31	52	14.7653
""eeeeeqqqqqqqqeeeee2	chr13:100955058-100955317(+)$1	259	115	136	14.3261
"""ddddqqqqqqqqddddff	chr10:103567500-103567768(-)$1	268	181	202	15.8692
ee!!cccqqqqqqqqccc333	chr20:3321145-3321401(-)$1	256	138	159	16.2856
ff[ddddqqqqqqqqdddd]f	chr10:124187670-124187921(+)$1	251	192	213	15.7248
$$$ddddqqqqqqqqddddff	chr2:73761831-73762089(+)$1	258	225	246	15.1953
h"""cccqqqqqqqqccc]hh	chr2:190323367-190323633(+)$1	266	148	169	15.2141
gggggbbqqqqqqqqbb]ggg	chr4:103949895-103950154(-)$1	259	58	79	14.1505
ccc[cccqqqqqqqqccc22c	chr2:25678236-25678492(-)$1	256	180	201	15.6686
f"""cccqqqqqqqqccc333	chr2:207014496-207014760(-)$1	264	28	49	16.3819
bddddbbqqqqqqqqbb]ddd	chr16:87788768-87789017(-)$1	249	186	207	13.9602
gggggggqqqqqqqqgggggg	chr2:63169774-63170014(+)$1	240	173	194	14.4112
ccc[cccqqqqqqqqccc22c	chr2:32664452-32664712(+)$1	260	206	227	15.6686
:ccccccqqqqqqqqccc]cc	chr8:21832057-21832324(+)$1	267	176	197	14.4787
bb!!cccqqqqqqqqccc22b	chrY:15026874-15027148(+)$1	274	164	185	15.3544
eeeee[aqqqqqqqqa]eeee	chr20:45021615-45021904(-)$1	289	111	132	13.8422
''eeeeeqqqqqqqqeeeee8	chr4:68501121-68501407(-)$1	286	112	133	12.7271
c!!ddddqqqqqqqqdddd]c	chr1:155237996-155238251(-)$1	255	148	169	16.3943
f!!ddddqqqqqqqqdddd44	chr22:28256084-28256339(-)$1	255	204	225	16.2817
bb[ddddqqqqqqqqdddd]b	chr2:233620820-233621097(+)$1	277	194	215	15.4994
c!!ddddqqqqqqqqdddd33	chr20:18504962-18505231(+)$1	269	41	62	16.7176
:bb[cccqqqqqqqqccc]bb	chr1:75672274-75672542(-)$1	268	42	63	13.4833
dddd[bbqqqqqqqqbb]ddd	chr13:100959333-100959586(+)$1	253	49	70	13.9757
"ffffffqqqqqqqqffffff	chr5:177641736-177642002(-)$1	266	200	221	12.9713
gggggbbqqqqqqqqbb]ggg	chr11:92881822-92882113(-)$1	291	34	55	14.1505
c!!ddddqqqqqqqqdddd22	chr4:79359611-79359864(+)$1	253	80	101	16.3392
ggggg[aqqqqqqqqa]gggg	chr1:155883956-155884260(-)$1	304	125	146	14.4093
ddd[cccqqqqqqqqcccddd	chr3:122825482-122825774(+)$1	292	259	280	15.0419
gggggggqqqqqqqqgggggg	chr21:34900749-34901020(-)$1	271	3	24	14.4112
dd[ddddqqqqqqqqdddd22	chr19:49481277-49481559(-)$1	282	222	243	16.0312
ddeeeeeqqqqqqqqeeeee]	chr2:27840231-27840473(+)$1	242	169	190	14.0671
ddddcccqqqqqqqqccc]dd	chr15:40628877-40629132(-)$1	255	155	176	15.0684
cc[ddddqqqqqqqqddddcc	chr18:33799880-33800152(+)$1	272	120	141	15.9376
dd[ddddqqqqqqqqdddd]d	chr16:66757568-66757834(-)$1	266	22	43	15.9515
"""ddddqqqqqqqqdddd33	chr10:28824362-28824620(+)$1	258	25	46	16.6899
eeee[bbqqqqqqqqbb]eee	chr2:190313849-190314095(+)$1	246	54	75	13.6404
####cccqqqqqqqqccc333	chr6:34985130-34985389(+)$1	259	103	124	16.4317
eeeeeeeqqqqqqqqeeeee:	chr16:48381298-48381577(+)$1	279	51	72	13.0164
ccc"""aqqqqqqqqa4444c	chr16:67173773-67174034(+)$1	261	87	108	14.7832
=======qqqqqqqq======	chr6:144665219-144665476(+)$1	257	106	127	15.0435
e!!ddddqqqqqqqqdddd22	chr21:35127487-35127741(+)$1	254	111	132	16.2129
=======qqqqqqqq======	chr7:24881899-24882162(-)$1	263	208	229	15.0435
dd!!cccqqqqqqqqccc22d	chr1:146638053-146638309(-)$1	256	231	252	15.8065
###ddddqqqqqqqqddddcc	chr12:116445290-116445555(-)$1	265	122	143	16.0036
!ccccccqqqqqqqqccc]cc	chr6:149997730-149997990(-)$1	260	217	238	15.4559
fff!!bbqqqqqqqqbbffff	chr8:42176971-42177278(+)$1	307	53	74	13.4555
dddddddqqqqqqqqdddd]d	chr14:76620569-76620840(+)$1	271	143	164	15.5238
dd[ddddqqqqqqqqdddd]d	chr20:23357974-23358226(-)$1	252	115	136	15.9515
b[eeeeeqqqqqqqqeeeeeb	chr4:95494389-95494651(+)$1	262	155	176	13.8081
ccc[cccqqqqqqqqcccccc	chr12:69652294-69652564(+)$1	270	247	268	15.3691
!ccc[bbqqqqqqqqbb22cc	chr2:231313893-231314188(+)$1	295	239	260	14.0028
####cccqqqqqqqqccc444	chr17:7748754-7749009(+)$1	255	147	168	16.0907
###ddddqqqqqqqqdddd33	chr15:64430127-64430378(+)$1	251	77	98	16.5886
ddddcccqqqqqqqqccc22d	chr12:76443178-76443422(-)$1	244	62	83	15.3326
gggg[bbqqqqqqqqbbgggg	chr6:32945776-32946065(+)$1	289	133	154	14.1744
cc[ddddqqqqqqqqdddd]c	chr20:48557982-48558254(+)$1	272	47	68	16.1993
fffddddqqqqqqqqdddd22	chr11:67831940-67832206(-)$1	266	22	43	15.3951
ggggggaqqqqqqqqa]gggg	chr11:10013939-10014204(-)$1	265	62	83	14.4612
ddddcccqqqqqqqqccc444	chr7:100479159-100479402(+)$1	243	147	168	15.6102
ccc[cccqqqqqqqqccc]cc	chr6:131924192-131924498(-)$1	306	137	158	15.5293
bb[ddddqqqqqqqqddddbb	chr5:167922250-167922510(+)$1	260	180	201	14.9123

#otherMatches

#Seq PSSM
UACAACCCUUUUCCUGGUUUG	chr16:81691244-81691535(+)$1	291	228	249	15.5648
UGCCCUUAUUGCUUAAAGGUA	chr7:22175621-22175858(-)$1	237	185	206	16.2801
AUAUCAGAUUGCAUACUUACC	chr9:13186274-13186586(-)$1	312	31	52	14.7653
UCAGGACCCCUACAAGUCUUU	chr13:100955058-100955317(+)$1	259	115	136	14.3261
CAAAGAGGUAUUCAGUUCUUU	chr10:103567500-103567768(-)$1	268	181	202	15.8692
UCUUUGGUAAUCACUCCACAC	chr20:3321145-3321401(-)$1	256	138	159	16.2856
GUAUGUGGGCUCUCACGCAAA	chr10:124187670-124187921(+)$1	251	192	213	15.7248
CGUUGAAAGCUCCCAUUCAGG	chr2:73761831-73762089(+)$1	258	225	246	15.1953
AAAAACAAUUUUACAUGUGUA	chr2:190323367-190323633(+)$1	266	148	169	15.2141
GAUGCAGUUUCUCUCCUAGUA	chr4:103949895-103950154(-)$1	259	58	79	14.1505
GAUAGCCUCCUAUGUGGCCCG	chr2:25678236-25678492(-)$1	256	180	201	15.6686
UAUGUGUGUGUUUCAGCAAUA	chr2:207014496-207014760(-)$1	264	28	49	16.3819
CCAGUCCACCUCCGAGGCGCU	chr16:87788768-87789017(-)$1	249	186	207	13.9602
AGUAAAAAUCACCAAUUUUAC	chr2:63169774-63170014(+)$1	240	173	194	14.4112
GGUAUGCGUCCUGUAGUAAGG	chr2:32664452-32664712(+)$1	260	206	227	15.6686
CGAUUCAUCAUUAUUUGAUAU	chr8:21832057-21832324(+)$1	267	176	197	14.4787
CAGAUUCGGGACUUAGAACGU	chrY:15026874-15027148(+)$1	274	164	185	15.3544
UCACUACCCAGACUCGCAGUG	chr20:45021615-45021904(-)$1	289	111	132	13.8422
UUGCUGUCUUUUCAAAUAGUC	chr4:68501121-68501407(-)$1	286	112	133	12.7271
CAAUGUGUUGACCAUCGCAGG	chr1:155237996-155238251(-)$1	255	148	169	16.3943
AAAACUUCAUUCAAAAGGUAA	chr22:28256084-28256339(-)$1	255	204	225	16.2817
CUAGAGGUCGAAGUUCUUCAA	chr2:233620820-233621097(+)$1	277	194	215	15.4994
CUAAUUUGCCUUAAAAAGUGC	chr20:18504962-18505231(+)$1	269	41	62	16.7176
UUCUGAUUUUUCCCUGUUCGA	chr1:75672274-75672542(-)$1	268	42	63	13.4833
GUGGUUACAAAAAAAUAUCUA	chr13:100959333-100959586(+)$1	253	49	70	13.9757
AUCAAGGUAUUUUCUUCUUGA	chr5:177641736-177642002(-)$1	266	200	221	12.9713
CUUACUGUUAAUAUUCAUGUA	chr11:92881822-92882113(-)$1	291	34	55	14.1505
GUUCAUGUCCUGCCUCAUGUU	chr4:79359611-79359864(+)$1	253	80	101	16.3392
GGGGUUGUUUUUUCUCUAUUC	chr1:155883956-155884260(-)$1	304	125	146	14.4093
GGCCUCCCAAGGAAAGGAGCC	chr3:122825482-122825774(+)$1	292	259	280	15.0419
AAACUUUGAUUAUUAGAAGUU	chr21:34900749-34901020(-)$1	271	3	24	14.4112
AGCCCUGUGCCCUCCUAGGCC	chr19:49481277-49481559(-)$1	282	222	243	16.0312
GUGGUGUCAAGUAUCACAUCA	chr2:27840231-27840473(+)$1	242	169	190	14.0671
GCUCCCUGAUGGAAAAGGUGA	chr15:40628877-40629132(-)$1	255	155	176	15.0684
UCUACCUUUUUGUUUAGGUGA	chr18:33799880-33800152(+)$1	272	120	141	15.9376
GGCGUAUAAUUUUAAAUGCUC	chr16:66757568-66757834(-)$1	266	22	43	15.9515
AGUUCAUAAAAUUUAAUGAUA	chr10:28824362-28824620(+)$1	258	25	46	16.6899
AAAUUUUAUCUCAACAAUAUU	chr2:190313849-190314095(+)$1	246	54	75	13.6404
CUCCGUCCACUCCAAGACCAC	chr6:34985130-34985389(+)$1	259	103	124	16.4317
AGGAUUGUGUGGUAUCAGUCA	chr16:48381298-48381577(+)$1	279	51	72	13.0164
CAACCUCUCUGUCUUGUUUUU	chr16:67173773-67174034(+)$1	261	87	108	14.7832
UCAUCUAAGCAGAUGUAGGUG	chr6:144665219-144665476(+)$1	257	106	127	15.0435
CAGUGUCCCACCAGUGGCAGA	chr21:35127487-35127741(+)$1	254	111	132	16.2129
UCUGAGUUUUUUGAUGCUCAG	chr7:24881899-24882162(-)$1	263	208	229	15.0435
AGGUAAUUUUGUAUUAUUUAC	chr1:146638053-146638309(-)$1	256	231	252	15.8065
CACAACCUAACAAACGGUUUA	chr12:116445290-116445555(-)$1	265	122	143	16.0036
UGCACGCCAGCACCAGCGAUG	chr6:149997730-149997990(-)$1	260	217	238	15.4559
GAGUUGCUUAUUUCUGUUUCA	chr8:42176971-42177278(+)$1	307	53	74	13.4555
GAGCUGGUACACGACUUAGCC	chr14:76620569-76620840(+)$1	271	143	164	15.5238
GACUCAAUAUCUCGCUUGGAU	chr20:23357974-23358226(-)$1	252	115	136	15.9515
GUGUGUUUUUAAGCUAGCACC	chr4:95494389-95494651(+)$1	262	155	176	13.8081
GGGUCCACUUCCUCCUGGCCC	chr12:69652294-69652564(+)$1	270	247	268	15.3691
UUUCUGCCUGCAUCUGCUUGA	chr2:231313893-231314188(+)$1	295	239	260	14.0028
CCGCGCUGCACGGGAAGCCUU	chr17:7748754-7749009(+)$1	255	147	168	16.0907
GUCACAUGACUCAGAAUGUUG	chr15:64430127-64430378(+)$1	251	77	98	16.5886
AAAUUGCAAAACUCAGCAACA	chr12:76443178-76443422(-)$1	244	62	83	15.3326
CAGUACAUGAACAACUGGCUG	chr6:32945776-32946065(+)$1	289	133	154	14.1744
AGUUGAUCCAUAUUUGUCGUC	chr20:48557982-48558254(+)$1	272	47	68	16.1993
CACAGUAGAUGCAUAUGCUUA	chr11:67831940-67832206(-)$1	266	22	43	15.3951
UUUGUCCGUUACCAAGUGAUA	chr11:10013939-10014204(-)$1	265	62	83	14.4612
CAGUGGCUAUGAGAUGCCCUA	chr7:100479159-100479402(+)$1	243	147	168	15.6102
UUGUCUUUUUCCUCCAGGUCA	chr6:131924192-131924498(-)$1	306	137	158	15.5293
GACGUGCUCAGGUAUGUGCUC	chr5:167922250-167922510(+)$1	260	180	201	14.9123

#DB
((.((((........))))))	chr16:81691244-81691535(+)$1	1	228	249	15.5648
(..((((........))))..	chr7:22175621-22175858(-)$1	1	185	206	16.2801
((...((........))....	chr9:13186274-13186586(-)$1	1	31	52	14.7653
..(((((........))))).	chr13:100955058-100955317(+)$1	1	115	136	14.3261
...((((........))))))	chr10:103567500-103567768(-)$1	1	181	202	15.8692
((..(((........)))...	chr20:3321145-3321401(-)$1	1	138	159	16.2856
((.((((........)))).)	chr10:124187670-124187921(+)$1	1	192	213	15.7248
...((((........))))))	chr2:73761831-73762089(+)$1	1	225	246	15.1953
(...(((........))).))	chr2:190323367-190323633(+)$1	1	148	169	15.2141
(((((((........)).)))	chr4:103949895-103950154(-)$1	1	58	79	14.1505
(((.(((........)))..)	chr2:25678236-25678492(-)$1	1	180	201	15.6686
(...(((........)))...	chr2:207014496-207014760(-)$1	1	28	49	16.3819
(((((((........)).)))	chr16:87788768-87789017(-)$1	1	186	207	13.9602
(((((((........))))))	chr2:63169774-63170014(+)$1	1	173	194	14.4112
(((.(((........)))..)	chr2:32664452-32664712(+)$1	1	206	227	15.6686
.((((((........))).))	chr8:21832057-21832324(+)$1	1	176	197	14.4787
((..(((........)))..)	chrY:15026874-15027148(+)$1	1	164	185	15.3544
(((((.(........).))))	chr20:45021615-45021904(-)$1	1	111	132	13.8422
..(((((........))))).	chr4:68501121-68501407(-)$1	1	112	133	12.7271
(..((((........)))).)	chr1:155237996-155238251(-)$1	1	148	169	16.3943
(..((((........))))..	chr22:28256084-28256339(-)$1	1	204	225	16.2817
((.((((........)))).)	chr2:233620820-233621097(+)$1	1	194	215	15.4994
(..((((........))))..	chr20:18504962-18505231(+)$1	1	41	62	16.7176
.((.(((........))).))	chr1:75672274-75672542(-)$1	1	42	63	13.4833
((((.((........)).)))	chr13:100959333-100959586(+)$1	1	49	70	13.9757
.((((((........))))))	chr5:177641736-177642002(-)$1	1	200	221	12.9713
(((((((........)).)))	chr11:92881822-92882113(-)$1	1	34	55	14.1505
(..((((........))))..	chr4:79359611-79359864(+)$1	1	80	101	16.3392
(((((.(........).))))	chr1:155883956-155884260(-)$1	1	125	146	14.4093
(((.(((........))))))	chr3:122825482-122825774(+)$1	1	259	280	15.0419
(((((((........))))))	chr21:34900749-34901020(-)$1	1	3	24	14.4112
((.((((........))))..	chr19:49481277-49481559(-)$1	1	222	243	16.0312
(((((((........))))).	chr2:27840231-27840473(+)$1	1	169	190	14.0671
(((((((........))).))	chr15:40628877-40629132(-)$1	1	155	176	15.0684
((.((((........))))))	chr18:33799880-33800152(+)$1	1	120	141	15.9376
((.((((........)))).)	chr16:66757568-66757834(-)$1	1	22	43	15.9515
...((((........))))..	chr10:28824362-28824620(+)$1	1	25	46	16.6899
((((.((........)).)))	chr2:190313849-190314095(+)$1	1	54	75	13.6404
....(((........)))...	chr6:34985130-34985389(+)$1	1	103	124	16.4317
))(((((........))))).	chr16:48381298-48381577(+)$1	1	51	72	13.0164
(((...(........)....)	chr16:67173773-67174034(+)$1	1	87	108	14.7832
(((((((........))))))	chr6:144665219-144665476(+)$1	1	106	127	15.0435
(..((((........))))..	chr21:35127487-35127741(+)$1	1	111	132	16.2129
(((((((........))))))	chr7:24881899-24882162(-)$1	1	208	229	15.0435
((..(((........)))..)	chr1:146638053-146638309(-)$1	1	231	252	15.8065
...((((........))))))	chr12:116445290-116445555(-)$1	1	122	143	16.0036
.((((((........))).))	chr6:149997730-149997990(-)$1	1	217	238	15.4559
(((..((........))))))	chr8:42176971-42177278(+)$1	1	53	74	13.4555
(((((((........)))).)	chr14:76620569-76620840(+)$1	1	143	164	15.5238
((.((((........)))).)	chr20:23357974-23358226(-)$1	1	115	136	15.9515
(.(((((........))))))	chr4:95494389-95494651(+)$1	1	155	176	13.8081
(((.(((........))))))	chr12:69652294-69652564(+)$1	1	247	268	15.3691
.(((.((........))..))	chr2:231313893-231314188(+)$1	1	239	260	14.0028
....(((........)))...	chr17:7748754-7749009(+)$1	1	147	168	16.0907
...((((........))))..	chr15:64430127-64430378(+)$1	1	77	98	16.5886
(((((((........)))..)	chr12:76443178-76443422(-)$1	1	62	83	15.3326
((((.((........))))))	chr6:32945776-32946065(+)$1	1	133	154	14.1744
((.((((........)))).)	chr20:48557982-48558254(+)$1	1	47	68	16.1993
(((((((........))))..	chr11:67831940-67832206(-)$1	1	22	43	15.3951
(((((((........).))))	chr11:10013939-10014204(-)$1	1	62	83	14.4612
(((((((........)))...	chr7:100479159-100479402(+)$1	1	147	168	15.6102
(((.(((........))).))	chr6:131924192-131924498(-)$1	1	137	158	15.5293
((.((((........))))))	chr5:167922250-167922510(+)$1	1	180	201	14.9123

#PSSM
d : 0.22	c : 0.15	g : 0.11	e : 0.07	f : 0.07	b : 0.07	" : 0.06	# : 0.06	: : 0.03	= : 0.03	! : 0.03	$ : 0.01	h : 0.01	' : 0.01	
d : 0.22	c : 0.15	g : 0.11	! : 0.09	" : 0.07	e : 0.06	f : 0.06	b : 0.06	# : 0.06	= : 0.03	$ : 0.01	' : 0.01	[ : 0.01	
[ : 0.14	! : 0.14	c : 0.12	e : 0.11	g : 0.11	d : 0.11	" : 0.07	# : 0.06	f : 0.04	= : 0.03	$ : 0.01	b : 0.01	
d : 0.42	e : 0.11	g : 0.11	[ : 0.09	" : 0.06	! : 0.06	c : 0.04	# : 0.03	= : 0.03	f : 0.01	
d : 0.36	c : 0.28	e : 0.09	g : 0.09	[ : 0.06	" : 0.03	= : 0.03	f : 0.01	! : 0.01	
d : 0.34	c : 0.28	b : 0.14	e : 0.07	g : 0.04	[ : 0.03	= : 0.03	f : 0.01	" : 0.01	
d : 0.34	c : 0.28	b : 0.14	e : 0.07	a : 0.06	g : 0.03	= : 0.03	f : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.34	c : 0.28	b : 0.14	e : 0.07	a : 0.06	g : 0.03	= : 0.03	f : 0.01	
d : 0.34	c : 0.28	b : 0.14	e : 0.07	] : 0.04	g : 0.03	= : 0.03	f : 0.01	4 : 0.01	
d : 0.34	c : 0.28	e : 0.09	] : 0.07	g : 0.07	4 : 0.03	f : 0.03	= : 0.03	2 : 0.01	
d : 0.39	e : 0.11	g : 0.11	] : 0.09	2 : 0.09	4 : 0.06	3 : 0.04	f : 0.03	= : 0.03	c : 0.01	
2 : 0.15	e : 0.11	] : 0.11	g : 0.11	c : 0.11	3 : 0.09	d : 0.07	4 : 0.07	f : 0.06	b : 0.03	= : 0.03	h : 0.01	
c : 0.19	d : 0.15	g : 0.11	2 : 0.09	3 : 0.09	f : 0.07	b : 0.07	4 : 0.06	e : 0.03	= : 0.03	h : 0.01	8 : 0.01	] : 0.01	: : 0.01	

#score	953.1352998026322
#seq	63
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_UTR_m1_run2.txt

#BEAR
nnngggggggccc[ddddoooooodddd22cccggggggg	chr19:6424208-6424454(-)$1	246	186	226	15.6432
bb[ccc[bb[ccc!!a[ddddllldddda]ccc]bbccc]	chr17:27139251-27139644(-)$1	393	217	257	14.1295
==========[bb!!ddddooooooddddbb]========	chr20:62331071-62331336(-)$1	265	3	43	18.0971
[ffffff[eeeee!!ddddllldddd22eeeeeffffff]	chr3:98620224-98620511(-)$1	287	112	152	12.6423
ggggeeeee!!bb[ddddoooooodddd]bb333eeeee5	chr17:62501973-62502252(-)$1	279	196	236	15.6646
c[ffffff!!ccc[ddddoooooodddd333ccc333fff	chr15:91446273-91446562(+)$1	289	27	67	17.4627
ffff"""ccc[bb[eeeeennnnneeeeebb]ccc333ff	chr5:133340077-133340381(-)$1	304	66	106	12.8857
iiiiiiiii!!a"""ddddllldddd4444a22iiiiiii	chr7:100171080-100171332(-)$1	252	99	139	16.1176
!============[a[cccnnnnnccc22a]=========	chr17:73823576-73823859(-)$1	283	80	120	16.6327
"""ccc[ccc[ccc[bboooooobbccc22ccc22ccc33	chr1:109825437-109825758(-)$1	321	181	221	12.1167
=========="""bb[ddddmmmmdddd]bb=========	chr4:53279-53548(+)$1	269	169	209	15.9635
$$eeeeeffffff"""ddddllldddd333ffffff22ee	chr18:9102757-9103012(+)$1	255	13	53	13.4182
!!ggggggg"""a!!ddddmmmmdddd22a22ggggggg]	chr5:179248455-179248810(+)$1	355	154	194	16.0362
[bb[eeeee[ccc"""cccnnnnncccccc]eeeee]bb]	chr19:14628490-14628763(-)$1	273	63	103	13.6530
!a[cccccc[ccc!!eeeeeooooooeeeeeccc]ccc]c	chr6:74230135-74230370(-)$1	235	146	186	13.4990
a]ffffffffffff[ddddnnnnndddd22ffffff:ccc	chr19:1274211-1274460(+)$1	249	78	118	13.9608
fffffeeeee[bba[ddddnnnnndddd]a]bb]eeeee:	chr12:125270539-125270875(-)$1	336	131	171	14.5576
4444eeeeeccc####ddddmmmmddddccc:ffffff[c	chr7:856338-856598(+)$1	260	153	193	12.6158
fffff[ffffff!!cccddddllldddd22ccc4444fff	chr1:22379669-22379925(+)$1	256	139	179	14.1496
ggggggddddbb####ddddmmmmdddd333bb]dddd]g	chr4:1341005-1341265(+)$1	260	76	116	13.5752
cc[ggggggg!!dddd[bbnnnnnbb]dddd]gggggggc	chr13:45914966-45915211(-)$1	245	125	165	12.6844
[eeeee"""ggggggg[ddddllldddd]gggggggeeee	chr10:65225458-65225722(-)$1	264	124	164	13.9997
=========[ccc"""ddddmmmmdddd]ccc]=======	chr15:72564495-72564958(-)$1	463	66	106	18.1285
eeee"""ffffff!!dddd[allla]dddd333ffffff3	chrX:152954267-152954565(+)$1	298	77	117	14.2324
ddddddccc[ccc####ddddlllddddccc]ccc]dddd	chr7:25164631-25164914(-)$1	283	14	54	13.0920
bb[a[iiiiiiiii[ddddmmmmddddiiiiiiiiia]bb	chr19:1205688-1205966(+)$1	278	7	47	13.8020
bb]iiiiiiiii:addddoooooodddd]aiiiiiiiiin	chr2:85766871-85767152(+)$1	281	27	67	15.4250
c[ffffff!!ccc####cccoooooocccccc]ffffffc	chr19:15512310-15512561(-)$1	251	94	134	13.8302
fffff[ccc"""eeeeeooooooeeeee]ccc]ffffff2	chr17:79875943-79876195(-)$1	252	95	135	12.5413
=========[bbccc[bb[ammmma]bb]ccc]bb22===	chr12:132402728-132402988(+)$1	260	76	116	11.9386
[ccc[iiiiiiiii!!ccclllccc22iiiiiiiii]ccc	chr7:5569490-5569708(-)$1	218	165	205	12.7857
=======ggggggg[a[cccnnnnnccc]a]gggggggDD	chr17:17723230-17723495(-)$1	265	205	245	12.2389
======[a[ccc[a[ddddmmmmdddda]ccca]======	chr16:4660786-4661039(-)$1	253	168	208	16.3335
d[bbccc[cccccc[ddddnnnnnddddccc]ccc]ccc2	chr1:207494929-207495405(+)$1	476	202	242	15.3813
ciiiiiiiii!!a!!ddddnnnnndddd22a]iiiiiiii	chr19:1104349-1104692(+)$1	343	204	244	18.5679
fff[ccc[eeeee!!ddddnnnnndddd333eeeeeccc]	chr1:202130185-202130434(-)$1	249	77	117	16.2405
hhhh[eeeee[bb[ddddoooooodddd]bb22eeeee]h	chr12:31476906-31477156(-)$1	250	78	118	14.5809
========[a[a[ffffffnnnnnffffff]a]a]=====	chr19:1009912-1010132(-)$1	220	133	173	13.3214
==ffffff[a[ccc[ddddnnnnnddddccca]ffffff9	chr17:80685250-80685568(+)$1	318	116	156	15.9935
i[a[bb####ccc!!cccooooooccccccbb]a]iiiii	chr9:74979417-74979671(-)$1	254	140	180	14.5318
!eeeee[ffffff[a[ddddmmmmdddd]a]ffffff]ee	chr19:2270194-2270449(+)$1	255	110	150	14.2223
========[a[a[ffffffnnnnnffffff]a]a]=====	chr19:1009843-1010112(-)$1	269	113	153	13.3214
eee[eeeee[cccddddaooooooa]dddd]ccceeeee3	chr2:191513835-191514175(+)$1	340	9	49	13.8661
ee[ffffff!!bbddddddddllldddd]dddd22bb22f	chr17:79876234-79876512(-)$1	278	135	175	12.5356
[gggggggeeeee"""ddddmmmmdddd]eeeee]ggggg	chr5:140048626-140048866(+)$1	240	95	135	15.2185
fff:ggggggg[a[ddddoooooodddd]a]ggggggg::	chr21:46685899-46686147(-)$1	248	196	236	14.3552
!bb[dddd[ccc!!ddddoooooodddd22ccc]dddd]b	chr19:46285638-46285894(-)$1	256	7	47	14.9589
cc[ffffff!!eeeeecccnnnnnccc]eeeee]ffffff	chr6:29595630-29595898(-)$1	268	155	195	12.4170
b[ggggggg[ccc[dddd[aooooooa]ddddcccggggg	chr3:176914160-176914414(-)$1	254	67	107	14.2884
eeggggggg[ccc!!ddddnnnnndddd]cccggggggg4	chr3:186502108-186502318(+)$1	210	57	97	18.4439
hhhh[eeeee[bb[ddddoooooodddd]bb22eeeee]h	chr12:31476958-31477215(-)$1	257	137	177	14.5809
eeggggggg[ccc!!ddddnnnnndddd]cccggggggg4	chr3:186502076-186502308(+)$1	232	89	129	18.4439
[bbccc"""bb[a[eeeeeooooooeeeeea]bb333ccc	chr17:7477039-7477337(+)$1	298	47	87	12.3654
ggggggg####eeeeeddddmmmmdddd22eeeee333gg	chr2:114648057-114648346(+)$1	289	215	255	14.2314

#otherMatches

#Seq PSSM
GGAGUAGGGGCGCACUGGGGGUCACCAGGAGCGGCGCCUG	chr19:6424208-6424454(-)$1	246	186	226	15.6432
GCACCGCGGAGUCCUGCGCUCCGUGAGCCUGGCACCCGGA	chr17:27139251-27139644(-)$1	393	217	257	14.1295
GUGGUCUGGGGCUGAUCUUGCCUUGAGGAAGACCCAGGCC	chr20:62331071-62331336(-)$1	265	3	43	18.0971
CCUCCCCUGCGCUCCGGCCUGGGGUCUCGGCGCGGGGAGC	chr3:98620224-98620511(-)$1	287	112	152	12.6423
CGCCAUUUUGAUAUUCACGUCACAGUGAUUGGAAGAGAUU	chr17:62501973-62502252(-)$1	279	196	236	15.6646
GGGCCAGGAAGGGACAGGAGGCUGCCUGAGGCCCGUACCU	chr15:91446273-91446562(+)$1	289	27	67	17.4627
CCGGCUUCCUUGCGCCCUGGACGGCGGGGGCCAGGCCCCU	chr5:133340077-133340381(-)$1	304	66	106	12.8857
CCCCCAUGGGACAGGUGAGGGGCUCGGACGGAGCCGUGGG	chr7:100171080-100171332(-)$1	252	99	139	16.1176
GCCCCUGCCCGCCUCUCAGAAAAGCUGCUGUGGUGGGCAG	chr17:73823576-73823859(-)$1	283	80	120	16.6327
AGGAGAGGCCAGGAUGCAGGGCGGCUCCAGGGCAAUCUGG	chr1:109825437-109825758(-)$1	321	181	221	12.1167
CGGCGGCGGGACCGAGUCUGCGAACGGAGUCCCCGCUGCC	chr4:53279-53548(+)$1	269	169	209	15.9635
GGCGGCUGGCCUCACCGCCCACUGGGUAAGGAGGCUCAAG	chr18:9102757-9103012(+)$1	255	13	53	13.4182
GACGCGGGUAAACAAGCGCGGGGGUGCGGGGGACUCGCGA	chr5:179248455-179248810(+)$1	355	154	194	16.0362
GCGGCCCCGAGCAGCCCCGGGGUGCGGUGCAUGGGGGUGG	chr19:14628490-14628763(-)$1	273	63	103	13.6530
CGCGCCGCCGUGUAUCGCCCCGCCCUGGGCGGCAAGGCUG	chr6:74230135-74230370(-)$1	235	146	186	13.4990
UGCUUUGCUUUGGCAGGUUGAAGGGGCCCGGCCAGGACUC	chr19:1274211-1274460(+)$1	249	78	118	13.9608
GCUGCGCAGCACGCUUGCGUCUUUUGCAUGCCGCGUUGCC	chr12:125270539-125270875(-)$1	336	131	171	14.5576
UACCCCGGCCCGCGCAGGUGAAGACGCCCGGAGACCCUGG	chr7:856338-856598(+)$1	260	153	193	12.6158
GAGGGCAGCUCGCUGGCUGCUCGCGGCGGUGCCUGUCCGA	chr1:22379669-22379925(+)$1	256	139	179	14.1496
GGGCGCCGGGCAGAGACCUGCGGCCAGGGCGUGUCCCGUG	chr4:1341005-1341265(+)$1	260	76	116	13.5752
GGACGCCGGCGGUCUUAGCCGAGCGCGGAGGGGUCGGUGC	chr13:45914966-45915211(-)$1	245	125	165	12.6844
AGGGCCCGAGGUCGCUGUGUCCGGGGCAGAGCGGCCGGUU	chr10:65225458-65225722(-)$1	264	124	164	13.9997
ccgggccgcucgucccgucggcugcggccgcgcgcggccc	chr15:72564495-72564958(-)$1	463	66	106	18.1285
cccgacccccggagccgccgcggAGGGGUGAAGUCCGGGC	chrX:152954267-152954565(+)$1	298	77	117	14.2324
GACCGGCGUGUCCUUGGACUUAGAGAGUGGGGACGUCCGG	chr7:25164631-25164914(-)$1	283	14	54	13.0920
CGGGUGGGCACGUCGUCCUCGCGAGGAGGCGUGCCCUGCG	chr19:1205688-1205966(+)$1	278	7	47	13.8020
CGGGAGCGCGCGCCCCGCAUUGCAGCGGCGACCACGUGUU	chr2:85766871-85767152(+)$1	281	27	67	15.4250
GAGGUGAGGGAUCCUGAGGGGCUCCACCUGAUGCUCACCC	chr19:15512310-15512561(-)$1	251	94	134	13.8302
GGGUGGGUGGGGGCGGGGCCCAUCUUGCGCAUGCGCCCUG	chr17:79875943-79876195(-)$1	252	95	135	12.5413
CGCAGCCCUUGGCCUGAGGUGGGGAGCUGGGGACUUGGGG	chr12:132402728-132402988(+)$1	260	76	116	11.9386
GUUUGAACCGGGCGGAGGCGGGGCUGGCGCCCGGUUGGGA	chr7:5569490-5569708(-)$1	218	165	205	12.7857
UCCACUCGGCUGCUUGAGAUGCCCUGUUACUAGCAGUCCU	chr17:17723230-17723495(-)$1	265	205	245	12.2389
UCCCCCAGUCAUGGUGCUGGUGCCAGCUGGUGCAGGGGGA	chr16:4660786-4661039(-)$1	253	168	208	16.3335
GUGCCCGCGGCGCUGCCCCUCCUCGGGGAGCUGCCCCGGC	chr1:207494929-207495405(+)$1	476	202	242	15.3813
UGGGGGCGCGGAGGGCUGGAAAUCCCGGAUCAcgcgcccc	chr19:1104349-1104692(+)$1	343	204	244	18.5679
CCGUGGCACAGGCGUGGAGACGACCUUUUUGGCCUGGCCC	chr1:202130185-202130434(-)$1	249	77	117	16.2405
AGGGAGGUGGCGGCGAGCGACGCGGUUCACCUCCCGCUGC	chr12:31476906-31477156(-)$1	250	78	118	14.5809
GGCCGGCUUGGGGUGGGGCCUCGCGCCCUAGUGCCGGCCG	chr19:1009912-1010132(-)$1	220	133	173	13.3214
UCCGGUGCGCAGGGAGGUGGCCAGCGCCCCCGGGCACUGC	chr17:80685250-80685568(+)$1	318	116	156	15.9935
CGGGCCAAUGGCGAAGCCGGAGCAGGCCGCGGAUGGCGGC	chr9:74979417-74979671(-)$1	254	140	180	14.5318
GGCCGUCGAGCGUGCGCUGCGGGAGCGGGGAGCGCUUUGC	chr19:2270194-2270449(+)$1	255	110	150	14.2223
GGCCGGCUUGGGGUGGGGCCUCGCGCCCUAGUGCCGGCCG	chr19:1009843-1010112(-)$1	269	113	153	13.3214
gccgccgccgccgcggccAAGCGAGCGCCGUCGGGGCGGG	chr2:191513835-191514175(+)$1	340	9	49	13.8661
GUGAGGCCCGAGCGCUCACACUUCGUGUAGGGCGGGCAGG	chr17:79876234-79876512(-)$1	278	135	175	12.5356
AUGGCUUUGGGGCCACAAGUGACCGCUUUGCCCUGAGAGC	chr5:140048626-140048866(+)$1	240	95	135	15.2185
GCUAGACAGUGUGUGGUUAGUAGGAAUCUCUCAUUGUUCA	chr21:46685899-46686147(-)$1	248	196	236	14.3552
AGGGUUCUGAAGGGCCCUGGAAGGAGGGAGCUUGGGGGGC	chr19:46285638-46285894(-)$1	256	7	47	14.9589
CCGCGGGGGCCGUAGGAAGCCAACCUUCCCUGCUUCUCCG	chr6:29595630-29595898(-)$1	268	155	195	12.4170
gaccccggccggcgugcugggggcugcgggcggcuguugg	chr3:176914160-176914414(-)$1	254	67	107	14.2884
GGUGCAGUUGAGGUGGCCUGGAAGGGGUGUCUGACUGCAG	chr3:186502108-186502318(+)$1	210	57	97	18.4439
AGGGAGGUGGCGGCGAGCGACGCGGUUCACCUCCCGCUGC	chr12:31476958-31477215(-)$1	257	137	177	14.5809
GGUGCAGUUGAGGUGGCCUGGAAGGGGUGUCUGACUGCAG	chr3:186502076-186502308(+)$1	232	89	129	18.4439
ACAUCCGGGCAACGCGAGGGGGGGGCUUCGGCUGGAGGGA	chr17:7477039-7477337(+)$1	298	47	87	12.3654
GUUUUUGCCAGUCGGUUUGGGGACCCAGGGGCCGAGCUCG	chr2:114648057-114648346(+)$1	289	215	255	14.2314

#DB
...)))))))(((.((((......))))..)))(((((((	chr19:6424208-6424454(-)$1	1	186	226	15.6432
((.(((.((.(((..(.((((...))))).))).))))).	chr17:27139251-27139644(-)$1	1	217	257	14.1295
((((((((((.((..((((......)))))).))))))))	chr20:62331071-62331336(-)$1	1	3	43	18.0971
.((((((.(((((..((((...))))..))))))))))).	chr3:98620224-98620511(-)$1	1	112	152	12.6423
(((((((((..((.((((......)))).))...))))).	chr17:62501973-62502252(-)$1	1	196	236	15.6646
(.((((((..(((.((((......))))...)))...)))	chr15:91446273-91446562(+)$1	1	27	67	17.4627
((((...(((.((.(((((.....))))))).)))...))	chr5:133340077-133340381(-)$1	1	66	106	12.8857
(((((((((..(...((((...))))....)..)))))))	chr7:100171080-100171332(-)$1	1	99	139	16.1176
.((((((((((((.(.(((.....)))..).)))))))))	chr17:73823576-73823859(-)$1	1	80	120	16.6327
...(((.(((.(((.((......)))))..)))..)))..	chr1:109825437-109825758(-)$1	1	181	221	12.1167
((((((((((...((.((((....)))).)))))))))))	chr4:53279-53548(+)$1	1	169	209	15.9635
..(((((((((((...((((...))))...))))))..))	chr18:9102757-9103012(+)$1	1	13	53	13.4182
..(((((((...(..((((....))))..)..))))))).	chr5:179248455-179248810(+)$1	1	154	194	16.0362
.((.(((((.(((...(((.....)))))).))))).)).	chr19:14628490-14628763(-)$1	1	63	103	13.6530
.(.((((((.(((..(((((......)))))))).))).)	chr6:74230135-74230370(-)$1	1	146	186	13.4990
).))))))((((((.((((.....))))..)))))).(((	chr19:1274211-1274460(+)$1	1	78	118	13.9608
)))))(((((.(((.((((.....)))).).)).))))).	chr12:125270539-125270875(-)$1	1	131	171	14.5576
....)))))(((....((((....))))))).((((((.(	chr7:856338-856598(+)$1	1	153	193	12.6158
(((((.((((((..(((((((...))))..)))....)))	chr1:22379669-22379925(+)$1	1	139	179	14.1496
((((((((((((....((((....))))...)).)))).)	chr4:1341005-1341265(+)$1	1	76	116	13.5752
((.(((((((..((((.((.....)).)))).))))))))	chr13:45914966-45915211(-)$1	1	125	165	12.6844
.(((((...(((((((.((((...)))).)))))))))))	chr10:65225458-65225722(-)$1	1	124	164	13.9997
(((((((((.(((...((((....)))).))).)))))))	chr15:72564495-72564958(-)$1	1	66	106	18.1285
((((...((((((..((((.(...).))))...)))))).	chrX:152954267-152954565(+)$1	1	77	117	14.2324
(((((((((.(((....((((...))))))).))).))))	chr7:25164631-25164914(-)$1	1	14	54	13.0920
((.(.(((((((((.((((....)))))))))))))).))	chr19:1205688-1205966(+)$1	1	7	47	13.8020
)).))))))))).(((((......)))).)(((((((((.	chr2:85766871-85767152(+)$1	1	27	67	15.4250
(.((((((..(((....(((......)))))).)))))))	chr19:15512310-15512561(-)$1	1	94	134	13.8302
(((((.(((...(((((......))))).))).)))))).	chr17:79875943-79876195(-)$1	1	95	135	12.5413
(((((((((.(((((.((.(....).)).))).))..)))	chr12:132402728-132402988(+)$1	1	76	116	11.9386
.(((.(((((((((..(((...)))..))))))))).)))	chr7:5569490-5569708(-)$1	1	165	205	12.7857
)))))))(((((((.(.(((.....))).).)))))))))	chr17:17723230-17723495(-)$1	1	205	245	12.2389
((((((.(.(((.(.((((....))))).)))).))))))	chr16:4660786-4661039(-)$1	1	168	208	16.3335
(.(((((.((((((.((((.....))))))).))).))).	chr1:207494929-207495405(+)$1	1	202	242	15.3813
)(((((((((..(..((((.....))))..).))))))))	chr19:1104349-1104692(+)$1	1	204	244	18.5679
(((.(((.(((((..((((.....))))...)))))))).	chr1:202130185-202130434(-)$1	1	77	117	16.2405
((((.(((((.((.((((......)))).))..))))).)	chr12:31476906-31477156(-)$1	1	78	118	14.5809
((((((((.(.(.((((((.....)))))).).).)))))	chr19:1009912-1010132(-)$1	1	133	173	13.3214
((((((((.(.(((.((((.....)))))))).)))))).	chr17:80685250-80685568(+)$1	1	116	156	15.9935
(.(.((....(((..(((......)))))))).).)))))	chr9:74979417-74979671(-)$1	1	140	180	14.5318
.(((((.((((((.(.((((....)))).).)))))).))	chr19:2270194-2270449(+)$1	1	110	150	14.2223
((((((((.(.(.((((((.....)))))).).).)))))	chr19:1009843-1010112(-)$1	1	113	153	13.3214
(((.(((((.((((((((......).)))).)))))))).	chr2:191513835-191514175(+)$1	1	9	49	13.8661
((.((((((..((((((((((...)))).))))..))..)	chr17:79876234-79876512(-)$1	1	135	175	12.5356
.((((((((((((...((((....)))).))))).)))))	chr5:140048626-140048866(+)$1	1	95	135	15.2185
))).(((((((.(.((((......)))).).)))))))..	chr21:46685899-46686147(-)$1	1	196	236	14.3552
.((.((((.(((..((((......))))..))).)))).)	chr19:46285638-46285894(-)$1	1	7	47	14.9589
((.((((((..((((((((.....))).))))).))))))	chr6:29595630-29595898(-)$1	1	155	195	12.4170
(.(((((((.(((.((((.(......).))))))))))))	chr3:176914160-176914414(-)$1	1	67	107	14.2884
(((((((((.(((..((((.....)))).)))))))))).	chr3:186502108-186502318(+)$1	1	57	97	18.4439
((((.(((((.((.((((......)))).))..))))).)	chr12:31476958-31477215(-)$1	1	137	177	14.5809
(((((((((.(((..((((.....)))).)))))))))).	chr3:186502076-186502308(+)$1	1	89	129	18.4439
.(((((...((.(.(((((......)))))).))...)))	chr17:7477039-7477337(+)$1	1	47	87	12.3654
(((((((....(((((((((....))))..)))))...))	chr2:114648057-114648346(+)$1	1	215	255	14.2314

#PSSM
= : 0.16	[ : 0.11	f : 0.11	c : 0.09	! : 0.09	e : 0.09	b : 0.07	g : 0.05	i : 0.03	d : 0.03	h : 0.03	n : 0.01	" : 0.01	$ : 0.01	a : 0.01	4 : 0.01	
= : 0.18	f : 0.12	e : 0.12	b : 0.11	[ : 0.09	g : 0.07	c : 0.05	i : 0.03	h : 0.03	n : 0.01	" : 0.01	$ : 0.01	! : 0.01	a : 0.01	] : 0.01	4 : 0.01	d : 0.01	
f : 0.20	= : 0.16	g : 0.14	[ : 0.11	e : 0.09	b : 0.07	i : 0.03	h : 0.03	n : 0.01	" : 0.01	4 : 0.01	d : 0.01	] : 0.01	c : 0.01	a : 0.01	
f : 0.20	g : 0.18	= : 0.16	c : 0.09	[ : 0.09	e : 0.07	i : 0.05	h : 0.03	4 : 0.01	d : 0.01	a : 0.01	b : 0.01	: : 0.01	
g : 0.18	f : 0.18	= : 0.16	e : 0.12	c : 0.11	[ : 0.07	i : 0.05	" : 0.03	d : 0.03	b : 0.01	
g : 0.18	e : 0.18	= : 0.16	f : 0.12	c : 0.11	i : 0.09	" : 0.03	[ : 0.03	d : 0.03	b : 0.01	
g : 0.16	= : 0.14	f : 0.14	e : 0.14	i : 0.09	c : 0.09	[ : 0.07	" : 0.07	d : 0.03	# : 0.01	
f : 0.18	g : 0.16	= : 0.12	e : 0.12	c : 0.09	i : 0.09	[ : 0.05	d : 0.03	" : 0.03	# : 0.03	b : 0.01	a : 0.01	
e : 0.18	g : 0.14	f : 0.12	c : 0.11	= : 0.09	i : 0.09	[ : 0.09	! : 0.03	" : 0.03	# : 0.03	b : 0.01	d : 0.01	
[ : 0.18	e : 0.11	! : 0.11	c : 0.11	g : 0.09	f : 0.09	i : 0.07	= : 0.05	a : 0.05	" : 0.03	# : 0.03	d : 0.01	b : 0.01	
c : 0.31	[ : 0.16	! : 0.11	f : 0.09	e : 0.05	" : 0.05	b : 0.05	g : 0.05	i : 0.05	= : 0.01	# : 0.01	
c : 0.35	b : 0.16	e : 0.09	f : 0.09	a : 0.05	" : 0.05	i : 0.05	! : 0.03	g : 0.03	[ : 0.03	= : 0.01	
c : 0.31	b : 0.12	e : 0.11	f : 0.07	a : 0.07	[ : 0.05	" : 0.03	# : 0.03	! : 0.03	g : 0.03	i : 0.03	= : 0.01	d : 0.01	: : 0.01	
! : 0.24	[ : 0.20	" : 0.09	c : 0.07	# : 0.07	f : 0.05	a : 0.05	d : 0.05	e : 0.05	g : 0.03	i : 0.03	b : 0.01	
d : 0.22	! : 0.22	[ : 0.14	e : 0.09	" : 0.09	# : 0.07	a : 0.03	c : 0.03	f : 0.03	b : 0.01	g : 0.01	
d : 0.49	e : 0.11	[ : 0.07	" : 0.07	# : 0.07	a : 0.03	c : 0.03	f : 0.03	b : 0.01	g : 0.01	! : 0.01	
d : 0.62	c : 0.11	[ : 0.07	e : 0.07	b : 0.03	# : 0.03	f : 0.03	
d : 0.68	c : 0.12	e : 0.05	o : 0.03	b : 0.03	f : 0.03	a : 0.01	
d : 0.51	o : 0.22	c : 0.11	e : 0.05	[ : 0.03	f : 0.03	b : 0.01	
n : 0.27	o : 0.25	d : 0.24	l : 0.05	m : 0.05	c : 0.03	a : 0.03	e : 0.01	[ : 0.01	
o : 0.31	n : 0.29	m : 0.20	d : 0.09	l : 0.07	a : 0.01	
o : 0.31	n : 0.29	m : 0.20	l : 0.18	
o : 0.31	n : 0.29	m : 0.20	l : 0.12	d : 0.03	c : 0.01	
n : 0.29	o : 0.27	m : 0.14	l : 0.11	d : 0.11	b : 0.01	e : 0.01	c : 0.01	
d : 0.62	o : 0.09	c : 0.09	a : 0.05	e : 0.03	b : 0.03	f : 0.03	n : 0.01	
d : 0.64	c : 0.11	e : 0.05	o : 0.05	] : 0.05	f : 0.03	b : 0.01	2 : 0.01	
d : 0.64	c : 0.12	e : 0.07	2 : 0.03	f : 0.03	4 : 0.01	] : 0.01	b : 0.01	a : 0.01	
d : 0.59	c : 0.09	e : 0.07	2 : 0.05	i : 0.03	f : 0.03	] : 0.03	4 : 0.01	3 : 0.01	b : 0.01	a : 0.01	
] : 0.33	2 : 0.16	c : 0.12	d : 0.09	e : 0.09	3 : 0.07	i : 0.03	f : 0.03	a : 0.01	4 : 0.01	
c : 0.24	2 : 0.12	a : 0.12	b : 0.11	e : 0.09	d : 0.09	3 : 0.07	i : 0.03	f : 0.03	] : 0.01	4 : 0.01	g : 0.01	
c : 0.29	] : 0.16	b : 0.12	e : 0.09	3 : 0.07	a : 0.05	d : 0.05	i : 0.05	f : 0.03	2 : 0.01	g : 0.01	
c : 0.27	] : 0.12	e : 0.11	2 : 0.07	f : 0.05	b : 0.05	g : 0.05	i : 0.05	a : 0.05	3 : 0.03	= : 0.03	d : 0.03	: : 0.01	
c : 0.22	] : 0.14	g : 0.12	e : 0.11	f : 0.07	i : 0.07	= : 0.05	2 : 0.05	b : 0.05	3 : 0.03	a : 0.01	d : 0.01	
f : 0.16	g : 0.14	c : 0.12	] : 0.11	e : 0.11	i : 0.09	= : 0.07	a : 0.05	2 : 0.03	b : 0.03	3 : 0.01	4 : 0.01	
f : 0.18	g : 0.14	e : 0.14	= : 0.09	i : 0.09	] : 0.09	c : 0.07	b : 0.03	3 : 0.03	2 : 0.03	d : 0.03	4 : 0.01	
g : 0.18	f : 0.18	= : 0.12	e : 0.12	i : 0.11	3 : 0.07	b : 0.03	c : 0.03	d : 0.03	] : 0.03	4 : 0.01	2 : 0.01	
g : 0.16	f : 0.14	= : 0.12	e : 0.11	c : 0.09	3 : 0.07	i : 0.07	d : 0.05	2 : 0.03	] : 0.03	: : 0.01	4 : 0.01	a : 0.01	b : 0.01	
g : 0.16	f : 0.16	c : 0.14	= : 0.14	e : 0.11	i : 0.07	d : 0.05	3 : 0.03	2 : 0.03	] : 0.03	b : 0.01	
f : 0.16	g : 0.14	= : 0.14	c : 0.11	e : 0.11	] : 0.09	i : 0.07	b : 0.03	3 : 0.01	[ : 0.01	d : 0.01	D : 0.01	2 : 0.01	: : 0.01	
= : 0.14	c : 0.12	g : 0.09	] : 0.09	f : 0.09	i : 0.05	3 : 0.05	e : 0.05	: : 0.03	b : 0.03	2 : 0.03	h : 0.03	4 : 0.03	5 : 0.01	d : 0.01	n : 0.01	D : 0.01	9 : 0.01	

#score	785.7217036222106
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF410XHF_HLTF_CDS_m1_run1.txt

#BEAR
[bb!!ccctttttttttttcccbbbb	chr9:123287170-123287456(-)$1	286	215	241	20.1027
ccceeeeewwwwwwwwwwwwwweeee	chr17:8424476-8424703(-)$1	227	147	173	22.7886
eeeeeeeevvvvvvvvvvvvveeeee	chr20:257230-257509(-)$1	279	46	72	23.6981
==========ttttttttttt=====	chrX:76938901-76939128(-)$1	227	71	97	22.1748
iiiiiiiwwwwwwwwwwwwwwiiiii	chr21:38480593-38480844(+)$1	251	72	98	22.8678
ccc[ddddwwwwwwwwwwwwwwdddd	chr5:180278045-180278314(-)$1	269	172	198	22.4597
iiiiiiiiiuuuuuuuuuuuuiiiii	chr1:110882546-110882828(+)$1	282	165	191	23.4698
ii"""ddddtttttttttttdddd33	chr1:70716365-70716657(+)$1	292	140	166	22.1492
hhhhhhhhvvvvvvvvvvvvvhhhhh	chr16:89350300-89350663(-)$1	363	305	331	21.6420
iiiiiiiiitttttttttttiiiiii	chr6:129959652-129959873(-)$1	221	30	56	22.0098
!gggggggvvvvvvvvvvvvvggggg	chr1:89225867-89226116(+)$1	249	6	32	23.8677
!!eeeeeyyyyyyyyyyyyyyyyeee	chr4:151792432-151792664(-)$1	232	179	205	21.8598
==[ddddccctttttttttttccc]d	chr6:76372836-76373100(+)$1	264	56	82	22.1647
eeee[eeeeettttttttttteeeee	chr21:44323873-44324156(+)$1	283	242	268	21.7946
""ffffffvvvvvvvvvvvvvfffff	chr17:78319314-78319602(+)$1	288	131	157	22.2556
ddd[eeeeeuuuuuuuuuuuueeeee	chr8:17882817-17883050(+)$1	233	117	143	23.2616
ffffffyyyyyyyyyyyyyyyyffff	chr4:13603920-13604183(-)$1	263	10	36	20.2476
gggggggxxxxxxxxxxxxxxxgggg	chr2:71650706-71650975(+)$1	269	101	127	18.3100
bccc!!ccctttttttttttccc22c	chr1:186331326-186331577(-)$1	251	137	163	21.7076
iiii:eeeeettttttttttteeeee	chr1:19494545-19494775(-)$1	230	173	199	21.2911
[ffffffwwwwwwwwwwwwwwfffff	chr12:6692168-6692376(-)$1	208	23	49	21.1533
eee[bbyyyyyyyyyyyyyyyybb]e	chr2:32639736-32639964(+)$1	228	160	186	20.5615
hhhhhhhhyyyyyyyyyyyyyyyyhh	chr11:108117686-108117952(+)$1	266	192	218	19.6780
eee::dddduuuuuuuuuuuudddd:	chr14:102452212-102452510(+)$1	298	82	108	20.0579
ddddcccwwwwwwwwwwwwwwccc33	chr8:124267032-124267280(-)$1	248	45	71	22.2433
:ddddyyyyyyyyyyyyyyyydddd:	chr13:79933628-79933881(-)$1	253	64	90	19.0154
ddd[bb[ccctttttttttttccc22	chr7:151873384-151873696(-)$1	312	12	38	21.2544
2ccc:dddduuuuuuuuuuuudddd:	chr17:5085995-5086256(-)$1	261	203	229	20.9216
ddd!!ddddtttttttttttdddd22	chr12:110468389-110468663(+)$1	274	135	161	21.6381
hhhh:dddduuuuuuuuuuuudddd:	chr13:107220062-107220312(-)$1	250	71	97	20.8975
b!!bbcccvvvvvvvvvvvvvccc]b	chr6:56498881-56499125(-)$1	244	110	136	23.1028
eeeedddduuuuuuuuuuuudddd33	chr10:64974304-64974596(-)$1	292	118	144	22.6200
:::eeeeevvvvvvvvvvvvveeeee	chr9:135204031-135204280(-)$1	249	170	196	21.3331
hhhhhhbbvvvvvvvvvvvvvbb]hh	chr2:109088111-109088358(+)$1	247	172	198	21.4486
oooccccccuuuuuuuuuuuucccFF	chrX:70782652-70782900(+)$1	248	160	186	21.6366
gggggggwwwwwwwwwwwwwwggggg	chr6:30525815-30526074(+)$1	259	59	85	22.6299
e!!eeeeevvvvvvvvvvvvveeeee	chr2:153530011-153530220(-)$1	209	153	179	24.0415
!!a[ddddvvvvvvvvvvvvvdddd]	chr1:214813625-214813877(+)$1	252	62	88	24.0272
:gggggggvvvvvvvvvvvvvggggg	chr4:151773478-151773742(-)$1	264	81	107	22.9085
ccccddddwwwwwwwwwwwwwwdddd	chr16:19548301-19548565(+)$1	264	159	185	22.2816
C::eeeeeuuuuuuuuuuuueeeee:	chr3:42678283-42678489(+)$1	206	30	56	19.4037
ggg!!cccvvvvvvvvvvvvvccc22	chr20:25657119-25657401(-)$1	282	84	110	23.9971
eeeeeeeeyyyyyyyyyyyyyyyyee	chr19:57325181-57325402(-)$1	221	86	112	21.0837
!ccc[eeeeettttttttttteeeee	chr15:65982928-65983193(-)$1	265	170	196	22.2043
ccc!!cccvvvvvvvvvvvvvccc]c	chr10:93740159-93740408(+)$1	249	59	85	24.1650
iiiiiiiiitttttttttttiiiiii	chrX:76939027-76939355(-)$1	328	299	325	22.0098
gggggg[ccctttttttttttccc]g	chr8:94745790-94746027(-)$1	237	124	150	22.4280
C::eeeeeuuuuuuuuuuuueeeee:	chr4:187629222-187629469(-)$1	247	218	244	19.4037
========vvvvvvvvvvvvv=====	chr10:64948831-64949045(-)$1	214	182	208	24.1154
[dddd[cccuuuuuuuuuuuuccc]d	chr5:140698996-140699256(-)$1	260	53	79	23.1490
dd[eeeeettttttttttteeeee]d	chr7:151877940-151878166(-)$1	226	148	174	21.1080
:::ddddwwwwwwwwwwwwwwdddd:	chr16:89348401-89348726(-)$1	325	84	110	18.8448
ffffffyyyyyyyyyyyyyyyyffff	chr10:27326102-27326351(-)$1	249	74	100	20.2476
%%%eeeeettttttttttteeeee22	chr15:42982082-42982355(+)$1	273	53	79	19.3066
ggg"""bbwwwwwwwwwwwwwwbb]g	chr3:121409922-121410205(-)$1	283	41	67	21.5664
$$$$$eeeeettttttttttteeeee	chr2:71654415-71654645(+)$1	230	32	58	20.9841
[cccddddvvvvvvvvvvvvvdddd2	chr11:57574314-57574553(+)$1	239	87	113	23.6408
'''eeeeevvvvvvvvvvvvveeeee	chr3:42685354-42685595(+)$1	241	12	38	22.1271
#bb[ddddvvvvvvvvvvvvvdddd]	chr8:100108495-100108761(+)$1	266	21	47	23.4136
iiiiiiixxxxxxxxxxxxxxxiiii	chr19:57325441-57325756(-)$1	315	4	30	18.5246

#otherMatches

#Seq PSSM
UGGCUGUCUCUUUGAUCCUGACCCCU	chr9:123287170-123287456(-)$1	286	215	241	20.1027
GCUUUUGGCUCCGCAUAUAAAACCAA	chr17:8424476-8424703(-)$1	227	147	173	22.7886
UUCCUGAAAUGCAUGCAAAGGUUCAG	chr20:257230-257509(-)$1	279	46	72	23.6981
AUAUUUCUUCAAAAGACAACAGAGGA	chrX:76938901-76939128(-)$1	227	71	97	22.1748
UUUUAAAUACUUGUUUUUCCUUUUAG	chr21:38480593-38480844(+)$1	251	72	98	22.8678
GUGUGGAGAACAUUAAUGGAACCUCC	chr5:180278045-180278314(-)$1	269	172	198	22.4597
CGGGCGGCCAAGCAUGCCAGAGGCCG	chr1:110882546-110882828(+)$1	282	165	191	23.4698
GUCCAACUGUAUACCUGCAUCAGUGU	chr1:70716365-70716657(+)$1	292	140	166	22.1492
CUACAGGGACAUGAAGAGCGACUCUG	chr16:89350300-89350663(-)$1	363	305	331	21.6420
UAACAGCUUAAAAAAUGUAAAGGUUG	chr6:129959652-129959873(-)$1	221	30	56	22.0098
AUAAGUAAUUUUAACAAUAUUUUAUU	chr1:89225867-89226116(+)$1	249	6	32	23.8677
CUUAGGAUUUACUCCUCUAAAUUUCU	chr4:151792432-151792664(-)$1	232	179	205	21.8598
AAAAUCAGACCAAAUGCCAAAGUUGU	chr6:76372836-76373100(+)$1	264	56	82	22.1647
GGGCAUCUGGAAAAACCCGUGCCAGA	chr21:44323873-44324156(+)$1	283	242	268	21.7946
GCGUGGUGGUACCAAUGCUGACACCA	chr17:78319314-78319602(+)$1	288	131	157	22.2556
ACCACUGAAACUGACAAUAUAUUCAG	chr8:17882817-17883050(+)$1	233	117	143	23.2616
UAUGCUGAAACUGUCAAACUUAAGCA	chr4:13603920-13604183(-)$1	263	10	36	20.2476
UAGCAGUAAACCAAGCAUCAAGGCUG	chr2:71650706-71650975(+)$1	269	101	127	18.3100
CUGUUGACCAAAUUAAAAGAGGUAUA	chr1:186331326-186331577(-)$1	251	137	163	21.7076
UCUGUAGCCAAAGUCUGCCCCUGGCU	chr1:19494545-19494775(-)$1	230	173	199	21.2911
CCGGCCCCGCCCCCCACCCAUGGGCC	chr12:6692168-6692376(-)$1	208	23	49	21.1533
UCCAACAGCCAGAAAAACUUCAGUGG	chr2:32639736-32639964(+)$1	228	160	186	20.5615
UUUAGAAAUUUCCUGUUAAUUUUUUU	chr11:108117686-108117952(+)$1	266	192	218	19.6780
CCAACGAGAUGUUUAGGAUUUUCUCC	chr14:102452212-102452510(+)$1	298	82	108	20.0579
UCUGCUCAAGCAAAAUAUACAGAGGA	chr8:124267032-124267280(-)$1	248	45	71	22.2433
GCCUCCCAAUAAAAGCAGUAUGAGGA	chr13:79933628-79933881(-)$1	253	64	90	19.0154
UCAAGUUUGCCUCCUUUCAUAGCACC	chr7:151873384-151873696(-)$1	312	12	38	21.2544
GUUCACUCCUUAUUCAACAUCGGAGA	chr17:5085995-5086256(-)$1	261	203	229	20.9216
CUGUAUCUCAAAAUGUGGAAGGGACC	chr12:110468389-110468663(+)$1	274	135	161	21.6381
GUCCCGCUCCAAGCACACCAAGAGCA	chr13:107220062-107220312(-)$1	250	71	97	20.8975
AGUCUCACAUAAACAUGAAGAGUGUA	chr6:56498881-56499125(-)$1	244	110	136	23.1028
CAAUAUGGAUAAAACACAUACCAUGG	chr10:64974304-64974596(-)$1	292	118	144	22.6200
GACAGAGACCUUCACAAAUUAUCUUU	chr9:135204031-135204280(-)$1	249	170	196	21.3331
GAGAGACUAUGAGCAAGAGAAAGUUC	chr2:109088111-109088358(+)$1	247	172	198	21.4486
UAUGCCCCACACUUUUUUUAUUGGUG	chrX:70782652-70782900(+)$1	248	160	186	21.6366
UCAUCAGUCCUUUAAUCCAUUCUGAU	chr6:30525815-30526074(+)$1	259	59	85	22.6299
CAAGCAUGUAUUAUGGAUUUUUAUGU	chr2:153530011-153530220(-)$1	209	153	179	24.0415
GAUGGACAGAGAAAACCUAAGUGUCG	chr1:214813625-214813877(+)$1	252	62	88	24.0272
AACUGGCAAAGAUUCAAUGACUGUCA	chr4:151773478-151773742(-)$1	264	81	107	22.9085
CGCACACAUAAUGAACAGUACCUGUG	chr16:19548301-19548565(+)$1	264	159	185	22.2816
AAACAUGCUUAUAAAUCACCGCAUGA	chr3:42678283-42678489(+)$1	206	30	56	19.4037
UCCAGGCAGAAACUUUUUACAUGCAG	chr20:25657119-25657401(-)$1	282	84	110	23.9971
UCAGGUAGAAGAACCAUACUAUGACU	chr19:57325181-57325402(-)$1	221	86	112	21.0837
AGUGAGACUUACCAAAUCUAAAAGUU	chr15:65982928-65983193(-)$1	265	170	196	22.2043
AUCUUGGCUUAUACCUAUACUGCCUG	chr10:93740159-93740408(+)$1	249	59	85	24.1650
UAUUUCUUCAAAAGACAACAGAGGAG	chrX:76939027-76939355(-)$1	328	299	325	22.0098
GCCUGAUCCAAAAAUAAAUUGUGGUU	chr8:94745790-94746027(-)$1	237	124	150	22.4280
AAUUCCCAGAGAUCUAGGCGUGGGAG	chr4:187629222-187629469(-)$1	247	218	244	19.4037
CCCUCCUUAGGAAUAGAAAUGGAGGG	chr10:64948831-64949045(-)$1	214	182	208	24.1154
ACUCUGCCUCUAAAGAAUGUCAGGAA	chr5:140698996-140699256(-)$1	260	53	79	23.1490
GUCUGACUCUUUUGGAACAAGUCAAA	chr7:151877940-151878166(-)$1	226	148	174	21.1080
ACCUUCCAAGAAAAUAGAAAAGGAAC	chr16:89348401-89348726(-)$1	325	84	110	18.8448
GACCUAAAACUUAAUGUAUCUCUAGG	chr10:27326102-27326351(-)$1	249	74	100	20.2476
GAACUCUAGACACCACAUAUGGAGAA	chr15:42982082-42982355(+)$1	273	53	79	19.3066
GAUAAACUGAAGAAAGAAUUAAAGCA	chr3:121409922-121410205(-)$1	283	41	67	21.5664
AAAAAGACAAAACUUGAAUCCUUGUC	chr2:71654415-71654645(+)$1	230	32	58	20.9841
AGGAUCCAGCAAACGAUACAGUGGAU	chr11:57574314-57574553(+)$1	239	87	113	23.6408
UAGUGUUUGUUGUUGCCGUUAAAGCA	chr3:42685354-42685595(+)$1	241	12	38	22.1271
UUCUUUCUUUAAAAUAAAAAUAGGAU	chr8:100108495-100108761(+)$1	266	21	47	23.4136
UUCAUCUGGAAGAAGAAGAAGAAGAU	chr19:57325441-57325756(-)$1	315	4	30	18.5246

#DB
.((..(((...........)))))))	chr9:123287170-123287456(-)$1	1	215	241	20.1027
((((((((..............))))	chr17:8424476-8424703(-)$1	1	147	173	22.7886
((((((((.............)))))	chr20:257230-257509(-)$1	1	46	72	23.6981
((((((((((...........)))))	chrX:76938901-76939128(-)$1	1	71	97	22.1748
(((((((..............)))))	chr21:38480593-38480844(+)$1	1	72	98	22.8678
(((.((((..............))))	chr5:180278045-180278314(-)$1	1	172	198	22.4597
(((((((((............)))))	chr1:110882546-110882828(+)$1	1	165	191	23.4698
((...((((...........))))..	chr1:70716365-70716657(+)$1	1	140	166	22.1492
((((((((.............)))))	chr16:89350300-89350663(-)$1	1	305	331	21.6420
(((((((((...........))))))	chr6:129959652-129959873(-)$1	1	30	56	22.0098
.(((((((.............)))))	chr1:89225867-89226116(+)$1	1	6	32	23.8677
..(((((................)))	chr4:151792432-151792664(-)$1	1	179	205	21.8598
((.(((((((...........))).)	chr6:76372836-76373100(+)$1	1	56	82	22.1647
((((.(((((...........)))))	chr21:44323873-44324156(+)$1	1	242	268	21.7946
..((((((.............)))))	chr17:78319314-78319602(+)$1	1	131	157	22.2556
(((.(((((............)))))	chr8:17882817-17883050(+)$1	1	117	143	23.2616
((((((................))))	chr4:13603920-13604183(-)$1	1	10	36	20.2476
(((((((...............))))	chr2:71650706-71650975(+)$1	1	101	127	18.3100
((((..(((...........)))..)	chr1:186331326-186331577(-)$1	1	137	163	21.7076
)))).(((((...........)))))	chr1:19494545-19494775(-)$1	1	173	199	21.2911
.((((((..............)))))	chr12:6692168-6692376(-)$1	1	23	49	21.1533
(((.((................)).)	chr2:32639736-32639964(+)$1	1	160	186	20.5615
((((((((................))	chr11:108117686-108117952(+)$1	1	192	218	19.6780
)))..((((............)))).	chr14:102452212-102452510(+)$1	1	82	108	20.0579
(((((((..............)))..	chr8:124267032-124267280(-)$1	1	45	71	22.2433
.((((................)))).	chr13:79933628-79933881(-)$1	1	64	90	19.0154
(((.((.(((...........)))..	chr7:151873384-151873696(-)$1	1	12	38	21.2544
.))).((((............)))).	chr17:5085995-5086256(-)$1	1	203	229	20.9216
(((..((((...........))))..	chr12:110468389-110468663(+)$1	1	135	161	21.6381
)))).((((............)))).	chr13:107220062-107220312(-)$1	1	71	97	20.8975
(..(((((.............))).)	chr6:56498881-56499125(-)$1	1	110	136	23.1028
((((((((............))))..	chr10:64974304-64974596(-)$1	1	118	144	22.6200
...(((((.............)))))	chr9:135204031-135204280(-)$1	1	170	196	21.3331
((((((((.............)).))	chr2:109088111-109088358(+)$1	1	172	198	21.4486
...)))(((............)))))	chrX:70782652-70782900(+)$1	1	160	186	21.6366
(((((((..............)))))	chr6:30525815-30526074(+)$1	1	59	85	22.6299
(..(((((.............)))))	chr2:153530011-153530220(-)$1	1	153	179	24.0415
..(.((((.............)))).	chr1:214813625-214813877(+)$1	1	62	88	24.0272
.(((((((.............)))))	chr4:151773478-151773742(-)$1	1	81	107	22.9085
((((((((..............))))	chr16:19548301-19548565(+)$1	1	159	185	22.2816
(..(((((............))))).	chr3:42678283-42678489(+)$1	1	30	56	19.4037
(((..(((.............)))..	chr20:25657119-25657401(-)$1	1	84	110	23.9971
((((((((................))	chr19:57325181-57325402(-)$1	1	86	112	21.0837
.(((.(((((...........)))))	chr15:65982928-65983193(-)$1	1	170	196	22.2043
(((..(((.............))).)	chr10:93740159-93740408(+)$1	1	59	85	24.1650
(((((((((...........))))))	chrX:76939027-76939355(-)$1	1	299	325	22.0098
((((((.(((...........))).)	chr8:94745790-94746027(-)$1	1	124	150	22.4280
)..(((((............))))).	chr4:187629222-187629469(-)$1	1	218	244	19.4037
((((((((.............)))))	chr10:64948831-64949045(-)$1	1	182	208	24.1154
.((((.(((............))).)	chr5:140698996-140699256(-)$1	1	53	79	23.1490
((.(((((...........))))).)	chr7:151877940-151878166(-)$1	1	148	174	21.1080
...((((..............)))).	chr16:89348401-89348726(-)$1	1	84	110	18.8448
((((((................))))	chr10:27326102-27326351(-)$1	1	74	100	20.2476
...(((((...........)))))..	chr15:42982082-42982355(+)$1	1	53	79	19.3066
(((...((..............)).)	chr3:121409922-121410205(-)$1	1	41	67	21.5664
.....(((((...........)))))	chr2:71654415-71654645(+)$1	1	32	58	20.9841
.(((((((.............)))).	chr11:57574314-57574553(+)$1	1	87	113	23.6408
...(((((.............)))))	chr3:42685354-42685595(+)$1	1	12	38	22.1271
.((.((((.............)))).	chr8:100108495-100108761(+)$1	1	21	47	23.4136
(((((((...............))))	chr19:57325441-57325756(-)$1	1	4	30	18.5246

#PSSM
e : 0.11	i : 0.11	d : 0.08	g : 0.08	[ : 0.06	c : 0.06	h : 0.06	! : 0.06	: : 0.06	= : 0.05	f : 0.03	b : 0.03	C : 0.03	" : 0.01	2 : 0.01	o : 0.01	% : 0.01	$ : 0.01	' : 0.01	# : 0.01	
c : 0.13	i : 0.11	g : 0.11	d : 0.11	e : 0.09	h : 0.06	! : 0.06	: : 0.06	= : 0.05	f : 0.05	b : 0.03	" : 0.01	o : 0.01	% : 0.01	$ : 0.01	' : 0.01	
c : 0.13	e : 0.11	g : 0.11	i : 0.09	d : 0.09	h : 0.06	f : 0.06	: : 0.06	b : 0.03	= : 0.03	[ : 0.03	! : 0.03	" : 0.01	o : 0.01	a : 0.01	% : 0.01	$ : 0.01	' : 0.01	
e : 0.21	i : 0.09	[ : 0.09	c : 0.09	g : 0.08	d : 0.08	! : 0.06	h : 0.06	f : 0.06	= : 0.03	" : 0.03	: : 0.01	b : 0.01	$ : 0.01	
e : 0.19	d : 0.16	! : 0.08	i : 0.08	g : 0.08	f : 0.06	: : 0.06	h : 0.05	b : 0.05	= : 0.03	" : 0.03	[ : 0.03	c : 0.03	$ : 0.01	
e : 0.26	d : 0.21	c : 0.09	i : 0.08	g : 0.08	f : 0.06	h : 0.05	= : 0.03	b : 0.03	! : 0.01	y : 0.01	[ : 0.01	" : 0.01	
e : 0.26	d : 0.21	c : 0.13	i : 0.08	g : 0.06	y : 0.06	= : 0.03	h : 0.03	f : 0.03	[ : 0.03	b : 0.03	
e : 0.24	d : 0.18	c : 0.16	w : 0.08	y : 0.08	i : 0.05	= : 0.03	h : 0.03	g : 0.03	x : 0.03	b : 0.03	f : 0.01	
v : 0.26	w : 0.15	y : 0.11	c : 0.09	d : 0.08	e : 0.08	t : 0.05	i : 0.05	u : 0.05	x : 0.03	= : 0.01	
v : 0.26	u : 0.16	w : 0.15	t : 0.13	y : 0.11	e : 0.06	c : 0.05	x : 0.03	= : 0.01	
t : 0.26	v : 0.26	u : 0.16	w : 0.15	y : 0.11	x : 0.03	
t : 0.26	v : 0.26	u : 0.16	w : 0.15	y : 0.11	x : 0.03	
t : 0.26	v : 0.26	u : 0.16	w : 0.15	y : 0.11	x : 0.03	
t : 0.26	v : 0.26	u : 0.16	w : 0.15	y : 0.11	x : 0.03	
t : 0.26	v : 0.26	u : 0.16	w : 0.15	y : 0.11	x : 0.03	
t : 0.26	v : 0.26	u : 0.16	w : 0.15	y : 0.11	x : 0.03	
t : 0.26	v : 0.26	u : 0.16	w : 0.15	y : 0.11	x : 0.03	
t : 0.26	v : 0.26	u : 0.16	w : 0.15	y : 0.11	x : 0.03	
t : 0.26	v : 0.26	u : 0.16	w : 0.15	y : 0.11	x : 0.03	
v : 0.26	t : 0.21	u : 0.16	w : 0.15	y : 0.11	x : 0.03	e : 0.03	c : 0.01	
v : 0.26	w : 0.15	t : 0.13	u : 0.11	y : 0.11	e : 0.06	d : 0.05	c : 0.03	i : 0.03	x : 0.03	
e : 0.21	c : 0.18	d : 0.18	y : 0.09	w : 0.06	i : 0.06	g : 0.05	= : 0.03	f : 0.03	x : 0.03	h : 0.01	b : 0.01	
e : 0.23	d : 0.21	c : 0.16	i : 0.08	b : 0.06	g : 0.06	f : 0.06	y : 0.05	= : 0.03	h : 0.01	
e : 0.24	d : 0.21	c : 0.15	i : 0.08	g : 0.06	f : 0.06	b : 0.05	= : 0.03	y : 0.03	h : 0.01	2 : 0.01	] : 0.01	
e : 0.23	d : 0.16	] : 0.13	i : 0.08	2 : 0.08	g : 0.06	f : 0.06	3 : 0.05	h : 0.05	= : 0.03	b : 0.01	F : 0.01	
e : 0.21	: : 0.11	g : 0.09	i : 0.08	d : 0.08	2 : 0.08	f : 0.06	3 : 0.05	h : 0.05	b : 0.03	= : 0.03	c : 0.03	] : 0.03	F : 0.01	

#score	1305.3001021988923
#seq	60
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF238REI_DROSHA_CDS_m3_run2.txt

#BEAR
iiiiiiidddd[ccc[ddddllldddd333ccc]dddd::	chr10:101379772-101380092(-)$1	320	228	268	11.2325
a[eeeee[a!!cccddddoooooodddd]ccc22aeeeee	chr2:27294195-27294431(-)$1	236	48	88	14.5019
===[dddd[ccc!!ddddoooooodddd22ccc]dddd22	chr6:125622919-125623229(-)$1	310	255	295	14.9576
ffffffeeeeeddddrrrrrrrrrdddd]eeeee333fff	chr1:43232432-43232756(-)$1	324	267	307	11.3797
edddddddd[ccc[ddddlllddddccc333dddd]dddd	chr5:112312414-112312740(+)$1	326	46	86	13.3548
e[a[eeeee[ccc[ddddnnnnndddd]ccc]eeeee]a]	chr3:47458583-47458839(-)$1	256	139	179	13.1911
ddd[accc!!ddddbboooooobb]dddd]ccc22a]ddd	chr18:51750763-51751016(-)$1	253	163	203	11.6095
]cccdddd[cccddddrrrrrrrrrdddd333cccdddd:	chr1:26606537-26606782(+)$1	245	139	179	10.3840
iiiiiiggggggg[eeeeellleeeee]gggggggdddd[	chr5:154135239-154135462(+)$1	223	39	79	11.0495
!ccc[bbccc[ddddaooooooa]dddd]ccc4444bb]c	chr1:1257244-1257474(-)$1	230	123	163	12.8125
!ccc!!ccc####ddddoooooodddd55555cccccc]f	chr6:26124323-26124609(+)$1	286	165	205	12.1089
ddd[ccc[bb####ddddoooooodddd22bbcccddddc	chr15:66795739-66795968(-)$1	229	108	148	14.2588
dd!!gggggggddddddddllldddd]dddd333gggggg	chr1:1258521-1258737(-)$1	216	14	54	12.8522
ccbb[bb[dddd[ddddoooooodddd333dddd333bb]	chr3:48664394-48664754(-)$1	360	61	101	13.5496
eee[dddd!!eeeee[ccclllccceeeee22dddd]eee	chr15:80215285-80215613(-)$1	328	38	78	11.5795
[ccc[dddd"""ddddddddmmmmdddd]dddd333dddd	chr9:32572921-32573195(-)$1	274	103	143	13.1726
[bb[dddd"""a[eeeeemmmmeeeee]a22dddd]bb]e	chr2:132249717-132249993(-)$1	276	194	234	11.7637
ccffffff####a[eeeeellleeeee]affffff]cccf	chr19:19029988-19030274(-)$1	286	67	107	11.6227
eeeee!!dddd[cccnnnnnccc]dddd4444eeeeeeee	chr16:69419481-69419729(-)$1	248	123	163	10.3389
eee!!bb[ccc[bb[ddddllldddd]bb]ccc]bbeeee	chr9:101558359-101558593(-)$1	234	192	232	11.3006
b[cccdddd"""eeeee[cccmmmmccc4444eeeeeddd	chr11:5290772-5291006(-)$1	234	162	202	10.1694
dd[cccdddd"""ddddllldddddddd22ccc]ddddff	chr11:64120476-64120743(+)$1	267	44	84	13.1869
]bbggggggg!!eeeeeooooooeeeee22gggggggccc	chr6:111136054-111136312(-)$1	258	136	176	12.7577
ccc!!ccc####ffffffmmmmffffff4444ccc22ccc	chr5:162886847-162887132(-)$1	285	0	40	10.5308
eeeedddd!!eeeee[ddddmmmmdddd22eeeee]dddd	chr19:36516892-36517179(+)$1	287	197	237	12.3147
bbgggggggeeeee[ddddllldddd]eeeee333ggggg	chr7:44621560-44621877(-)$1	317	237	277	12.0777
ccc[bbeeeee[bb!!ccclllccc22bb]eeeee]bbcc	chr9:100818949-100819245(+)$1	296	90	130	10.3196
ccc[eeeee[cccddddoooooodddd88888888ccc]e	chr11:62292787-62293027(-)$1	240	127	167	12.2315
eee[eeeee####dddd[allla]dddd22eeeee]eeee	chr2:130939790-130940064(+)$1	274	177	217	16.9651
####eeeee####bboooooobb4444eeeeebb22dddd	chr8:25315634-25315935(-)$1	301	200	240	10.6500
c!!eeeee"""ddddaooooooa]dddd22eeeee4444c	chr4:103790084-103790436(+)$1	352	279	319	15.4110
cbb[ccc[eeeeeeeeeennnnneeeee22eeeee]ccc2	chr11:64124644-64124899(+)$1	255	141	181	11.5962
f[bb"""eeeee[eeeeemmmmeeeee333eeeeebb]ff	chr16:767268-767533(+)$1	265	6	46	10.6025
ddd[a!!ffffff[ddddoooooodddd]ffffff]addd	chr15:44085072-44085276(+)$1	204	41	81	12.7667
BBeeeee[ccc[ccc[ccclllccc]ccc]ccc333eeee	chr11:118272258-118272534(+)$1	276	58	98	10.7121
eee[eeeee####ccc[bb[ammmma]bb]ccc333eeee	chr11:63742040-63742313(+)$1	273	182	222	10.3679
dd]bbeeeee!!a!!cccmmmmccc22aeeeeeggggggg	chr20:57582066-57582331(-)$1	265	140	180	10.0808
((((eeeee####ddddnnnnndddd]eeeee========	chr14:35761558-35761820(+)$1	262	94	134	11.0269
fff[cccbb[ccc!!ddddmmmmddddccc]bb333cccf	chr7:150935323-150935626(+)$1	303	68	108	11.2283
gg[eeeee!!a[a[ddddmmmmddddaa22eeeee22ggg	chr6:166755861-166756140(-)$1	279	212	252	14.2238
ee"""dddd####ddddnnnnnddddddddeeeee22eee	chr7:150935524-150935776(+)$1	252	93	133	14.0898
fff"""dddd"""ddddnnnnndddd]dddd4444fffff	chr19:51869425-51869712(-)$1	287	166	206	12.4228
ceeeeedddd"""ddddoooooodddd4444dddd]eeee	chr4:667901-668107(-)$1	206	83	123	16.1250
ddddddd"""bb!!ddddoooooodddd22bb22dddd]d	chr16:75600209-75600509(+)$1	300	156	196	13.4519
ddd[dddd[a!!aooooooa22a]dddd]dddd333eeee	chr8:98787973-98788263(+)$1	290	104	144	11.7968
eeeee[eeeee[cccddddllldddd]ccc]eeeeeeeee	chrX:48814265-48814545(-)$1	280	116	156	13.3296
ggg!!ccc"""bb[ddddoooooodddd]bb22ccc]ggg	chr5:130500781-130501060(-)$1	279	65	105	13.4304
!a[dddd[eeeee[eeeeellleeeee333eeeee333dd	chr19:4670136-4670418(-)$1	282	212	252	13.1882
ddd[eeeee####cccooooooccc22eeeeedddd::dd	chr14:24901214-24901521(+)$1	307	124	164	11.2613
eee[dddd[eeeeeooooooeeeeeddddeeeeeeeeee3	chr11:61584155-61584381(-)$1	226	12	52	10.4978
=====[eeeee!!eeeeemmmmeeeee]eeeee4444===	chr17:27224484-27224735(-)$1	251	138	178	12.4500
dddd[eeeee[ddddqqqqqqqqdddd333eeeee]dddd	chr11:57075941-57076179(-)$1	238	89	129	11.1382
fff[eeeeeddddcccddddllldddd333ccc]dddd55	chr19:1605260-1605546(-)$1	286	231	271	11.4302
hh!!eeeee####==========[bb[===========##	chr6:33382578-33382941(+)$1	363	43	83	9.7393

#otherMatches

#Seq PSSM
GUGGCAGGCGCCGUGGCAGGGAUCCUGGAGCACUGCGUGA	chr10:101379772-101380092(-)$1	320	228	268	11.2325
GCGAGGGCGAGGAGUGCGCCAGCCCGCAGCUCAGCCCCUC	chr2:27294195-27294431(-)$1	236	48	88	14.5019
GAGGCCGCGGCCGAGCGGGCGGGACUGUGGGGCGGCGGAG	chr6:125622919-125623229(-)$1	310	255	295	14.9576
CCCGGGGUGGUCCUGAGCAUGGAACGGGCGCUGCGCUCCC	chr1:43232432-43232756(-)$1	324	267	307	11.3797
GGACGGAAGUGAGCGGGUCCCGCCCCUUCCCCUUCUCGUC	chr5:112312414-112312740(+)$1	326	46	86	13.3548
UAGGUGUGGGACGCCAUUGAAGGGGUGCUGUGCUGCAGCA	chr3:47458583-47458839(-)$1	256	139	179	13.1911
CUGGCGGCGACUCCGCCAUAGAGCAGGGGGGCCAGGGCAG	chr18:51750763-51751016(-)$1	253	163	203	11.6095
GUCACCGGCUCCCGCGAAGUAAGUGCGCGCCCGGACUGGC	chr1:26606537-26606782(+)$1	245	139	179	10.3840
UCGGGCGCGCCCGGCUUCUCCGGGGGGGCGGGCGCGCAGA	chr5:154135239-154135462(+)$1	223	39	79	11.0495
UGUGGCCCCGUCAUCCUGAUGUGUGGUGCUGGCUUUGGAC	chr1:1257244-1257474(-)$1	230	123	163	12.8125
AAGCUCGCGCCAAAGCGAAAUCCCGCUCUUCUCGCGCUGG	chr6:26124323-26124609(+)$1	286	165	205	12.1089
CUCGCCCACUGAUAUCGGUGUACUCCGAAAAGGGGGAGUC	chr15:66795739-66795968(-)$1	229	108	148	14.2588
UGGAGGGACAUGGUGUUGGUGGCCAGUCAUCCUGAUGUCC	chr1:1258521-1258737(-)$1	216	14	54	12.8522
UGCACAUCUGGGUGUGCCCUCCUGCAUGUCCCCACACAUC	chr3:48664394-48664754(-)$1	360	61	101	13.5496
GAGACGCCACCUUCUUGCUGGCGGCGGGGGAGGGCGGCUU	chr15:80215285-80215613(-)$1	328	38	78	11.5795
CGCCGUGUCCUUUUGCGUUGGUACCAGCGGCGACAUGACG	chr9:32572921-32573195(-)$1	274	103	143	13.1726
AUCGACCCCGACGUGUUCAAGUGAGCGGGGCGGGUGGGGG	chr2:132249717-132249993(-)$1	276	194	234	11.7637
UUCCGGCUGACGUGUCUUUCAGGAAGAGGAGCUGGUGAGA	chr19:19029988-19030274(-)$1	286	67	107	11.6227
UGGAAGAGGCAGUCAAUCGCUGGGUGCUCAAGUUCUACUU	chr16:69419481-69419729(-)$1	248	123	163	10.3389
gcccgggggcccgggACCAGAGUGGUGCCCGGCGCUGGCC	chr9:101558359-101558593(-)$1	234	192	232	11.3006
CCUCUGCCAUCCUGGGCAACCCCAAGGUCAAGGCCCAUGG	chr11:5290772-5291006(-)$1	234	162	202	10.1694
CCAAGGGCUCAGAUGCUGCUGGCAGAGUUGUCUCGGGAGC	chr11:64120476-64120743(+)$1	267	44	84	13.1869
GUCCUCGCCCUGCCCGCGACCUGGCGGGAUGGGUGGGUCG	chr6:111136054-111136312(-)$1	258	136	176	12.7577
GGCGUAGCCUAAGCGUGGGAUUCCGCGCGUGCGCUCGGCU	chr5:162886847-162887132(-)$1	285	0	40	10.5308
CGGCGCCCAGGCACAGGCUGGAAGCAGCGAUGUGCAGGGC	chr19:36516892-36517179(+)$1	287	197	237	12.3147
GCGGGCUGAGGGUGGGGAGGCCCUUUGUACCCAGCUCAGC	chr7:44621560-44621877(-)$1	317	237	277	12.0777
cggcggccggACCCAGACUGGUAGUGAGGCUUUGGACCCC	chr9:100818949-100819245(+)$1	296	90	130	10.3196
GUUGACAUCAGGGGUCCCCAAGUGGACAUUGAUGUCCCGG	chr11:62292787-62293027(-)$1	240	127	167	12.2315
UGGAGCUGUACGAGCUGGCGCAGGCGGCGGGCGGCGCUAU	chr2:130939790-130940064(+)$1	274	177	217	16.9651
GGCAGCCCCAAGAACGGAAAGGUAAcgggggcgugagggg	chr8:25315634-25315935(-)$1	301	200	240	10.6500
CAGUCCCCAUCCUUGCACGUUCGCCAAGCGGGGGAAGGAG	chr4:103790084-103790436(+)$1	352	279	319	15.4110
UCCAGGCUGGAGUUCUGGUUCUUCCAGGUGGCUCCCGCUG	chr11:64124644-64124899(+)$1	255	141	181	11.5962
GCCGCUUUGGGGAGGCCCGGCUGGGCUGUGCCCCACGAUU	chr16:767268-767533(+)$1	265	6	46	10.6025
GGUCGCCGGUGUGUGGGCAGAGCGGCCCCCGCGUCUCACC	chr15:44085072-44085276(+)$1	204	41	81	12.7667
GGGUCCUUCCGGCGGGUGACAUUCAGCCGGCGGUUCGGGG	chr11:118272258-118272534(+)$1	276	58	98	10.7121
CCAAGAUCCAUUCGUUGCCGCCGGAGGGGAAGCUUGGGAU	chr11:63742040-63742313(+)$1	273	182	222	10.3679
gcggggccauggcgaggcgcgggccaggguggcggcCGCU	chr20:57582066-57582331(-)$1	265	140	180	10.0808
GAUUGUGUUUAAAGUAGUGCUUCUACCAACAUGUCCCGUG	chr14:35761558-35761820(+)$1	262	94	134	11.0269
CCCUCCUGGUGCUGACCCCUCCCGGGGGGCUCCUAUAGGG	chr7:150935323-150935626(+)$1	303	68	108	11.2283
GGAGCAGGGCCUGACUGCGCAGGUAGCGAACUUGCGCCCU	chr6:166755861-166756140(-)$1	279	212	252	14.2238
CUGGUGCAGAAGUUCUCCCUGCGAGACUGCAGCCCACGGC	chr7:150935524-150935776(+)$1	252	93	133	14.0898
GGGUCAUCGACUACGCCGUGAAGGUGAUCGGGCCCCCCUC	chr19:51869425-51869712(-)$1	287	166	206	12.4228
GUGCAGGUCUCUCCGCUCAUCAAGGUGAUCCAGGCUUUGC	chr4:667901-668107(-)$1	206	83	123	16.1250
UCCCCUUCCCGCCGCCGCCAUGAAGUGGAUGUUCAAGGAG	chr16:75600209-75600509(+)$1	300	156	196	13.4519
CUCUCGGGGUAUCGAGGAGGCAGGCCCGCGGGCGCACGGG	chr8:98787973-98788263(+)$1	290	104	144	11.7968
GUGCCGUAGGCGUGGGCGGCUGCUGCUCCGGGCCUGGGCA	chrX:48814265-48814545(-)$1	280	116	156	13.3296
GCGCAGGCUUGGCUGCGCCCUCUCGCGCCGCACGCUCUGC	chr5:130500781-130501060(-)$1	279	65	105	13.4304
CGUGCAUUCCUUCUCCCAUAACGUGGGCCCGGGGGUACGU	chr19:4670136-4670418(-)$1	282	212	252	13.1882
CAGUGGGUGGAGGGGCAAGGGAGUCAGCACCCCUGAAAGG	chr14:24901214-24901521(+)$1	307	124	164	11.2613
GCCCUGCGGUGCUGAAAACCCGGCGCGCAGGCGGCUGGCU	chr11:61584155-61584381(-)$1	226	12	52	10.4978
GCGCCAUGGGCAAUUGCCACACGGUGGGGCCCAACGAGGC	chr17:27224484-27224735(-)$1	251	138	178	12.4500
UGGGGUGGGCGGGGUGAGCCAGUGCCCAGAGCCCGGCCUG	chr11:57075941-57076179(-)$1	238	89	129	11.1382
CCCAGCCCCGCGCCGCUGCGUUCCGUAUUUGUGCGCGUUU	chr19:1605260-1605546(-)$1	286	231	271	11.4302
GGGAUGGGGGAAAUUCUCAGGGUGUUAGUCCUGGGGGGUA	chr6:33382578-33382941(+)$1	363	43	83	9.7393

#DB
)))))))((((.(((.((((...))))...))).))))..	chr10:101379772-101380092(-)$1	1	228	268	11.2325
(.(((((.(..(((((((......)))).)))..))))))	chr2:27294195-27294431(-)$1	1	48	88	14.5019
(((.((((.(((..((((......))))..))).))))..	chr6:125622919-125623229(-)$1	1	255	295	14.9576
(((((((((((((((.........)))).)))))...)))	chr1:43232432-43232756(-)$1	1	267	307	11.3797
(((((((((.(((.((((...)))))))...)))).))))	chr5:112312414-112312740(+)$1	1	46	86	13.3548
(.(.(((((.(((.((((.....)))).))).))))).).	chr3:47458583-47458839(-)$1	1	139	179	13.1911
(((.((((..((((((......)).)))).)))..).)))	chr18:51750763-51751016(-)$1	1	163	203	11.6095
.)))((((.(((((((.........))))...))))))).	chr1:26606537-26606782(+)$1	1	139	179	10.3840
))))))(((((((.(((((...))))).)))))))((((.	chr5:154135239-154135462(+)$1	1	39	79	11.0495
.(((.(((((.(((((......).)))).)))....)).)	chr1:1257244-1257474(-)$1	1	123	163	12.8125
.(((..(((....((((......)))).....)))))).)	chr6:26124323-26124609(+)$1	1	165	205	12.1089
(((.(((.((....((((......))))..))))))))))	chr15:66795739-66795968(-)$1	1	108	148	14.2588
((..(((((((((((((((...)))).))))...))))))	chr1:1258521-1258737(-)$1	1	14	54	12.8522
((((.((.((((.((((......))))...))))...)).	chr3:48664394-48664754(-)$1	1	61	101	13.5496
(((.((((..(((((.(((...))))))))..)))).)))	chr15:80215285-80215613(-)$1	1	38	78	11.5795
.(((.((((...((((((((....)))).))))...))))	chr9:32572921-32573195(-)$1	1	103	143	13.1726
.((.((((...(.(((((....))))).)..)))).)).)	chr2:132249717-132249993(-)$1	1	194	234	11.7637
((((((((....(.(((((...))))).))))))).))))	chr19:19029988-19030274(-)$1	1	67	107	11.6227
(((((..((((.(((.....))).))))....))))))))	chr16:69419481-69419729(-)$1	1	123	163	10.3389
(((..((.(((.((.((((...)))).)).))).))))))	chr9:101558359-101558593(-)$1	1	192	232	11.3006
(.(((((((...(((((.(((....)))....))))))))	chr11:5290772-5291006(-)$1	1	162	202	10.1694
((.(((((((...((((...))))))))..))).))))))	chr11:64120476-64120743(+)$1	1	44	84	13.1869
.))(((((((..(((((......)))))..)))))))(((	chr6:111136054-111136312(-)$1	1	136	176	12.7577
(((..(((....((((((....))))))....)))..)))	chr5:162886847-162887132(-)$1	1	0	40	10.5308
((((((((..(((((.((((....))))..))))).))))	chr19:36516892-36517179(+)$1	1	197	237	12.3147
))((((((((((((.((((...)))).)))))...)))))	chr7:44621560-44621877(-)$1	1	237	277	12.0777
(((.(((((((.((..(((...)))..)).))))).))))	chr9:100818949-100819245(+)$1	1	90	130	10.3196
(((.(((((.(((((((......))))........))).)	chr11:62292787-62293027(-)$1	1	127	167	12.2315
(((.(((((....((((.(...).))))..))))).))))	chr2:130939790-130940064(+)$1	1	177	217	16.9651
....(((((....((......))....)))))))..))))	chr8:25315634-25315935(-)$1	1	200	240	10.6500
(..(((((...(((((......).))))..)))))....)	chr4:103790084-103790436(+)$1	1	279	319	15.4110
(((.(((.((((((((((.....)))))..))))).))).	chr11:64124644-64124899(+)$1	1	141	181	11.5962
(.((...(((((.(((((....)))))...))))))).))	chr16:767268-767533(+)$1	1	6	46	10.6025
(((.(..((((((.((((......)))).)))))).))))	chr15:44085072-44085276(+)$1	1	41	81	12.7667
(((((((.(((.(((.(((...))).))).)))...))))	chr11:118272258-118272534(+)$1	1	58	98	10.7121
(((.(((((....(((.((.(....).)).)))...))))	chr11:63742040-63742313(+)$1	1	182	222	10.3679
)).))(((((..(..(((....)))..))))))(((((((	chr20:57582066-57582331(-)$1	1	140	180	10.0808
....(((((....((((.....)))).)))))))))))))	chr14:35761558-35761820(+)$1	1	94	134	11.0269
(((.(((((.(((..((((....))))))).))...))))	chr7:150935323-150935626(+)$1	1	68	108	11.2283
((.(((((..(.(.((((....))))))..)))))..)))	chr6:166755861-166756140(-)$1	1	212	252	14.2238
((...((((....((((.....)))))))))))))..)))	chr7:150935524-150935776(+)$1	1	93	133	14.0898
(((...((((...((((.....)))).))))....)))))	chr19:51869425-51869712(-)$1	1	166	206	12.4228
((((((((((...((((......))))....)))).))))	chr4:667901-668107(-)$1	1	83	123	16.1250
(((((((...((..((((......))))..))..)))).)	chr16:75600209-75600509(+)$1	1	156	196	13.4519
(((.((((.(..(......)..).)))).))))...))))	chr8:98787973-98788263(+)$1	1	104	144	11.7968
(((((.(((((.(((((((...)))).))).)))))))))	chrX:48814265-48814545(-)$1	1	116	156	13.3296
(((..(((...((.((((......)))).))..))).)))	chr5:130500781-130501060(-)$1	1	65	105	13.4304
.(.((((.(((((.(((((...)))))...)))))...))	chr19:4670136-4670418(-)$1	1	212	252	13.1882
(((.(((((....(((......)))..)))))))))..((	chr14:24901214-24901521(+)$1	1	124	164	11.2613
(((.((((.(((((......))))))))))))))))))).	chr11:61584155-61584381(-)$1	1	12	52	10.4978
(((((.(((((..(((((....))))).)))))....)))	chr17:27224484-27224735(-)$1	1	138	178	12.4500
((((.(((((.((((........))))...))))).))))	chr11:57075941-57076179(-)$1	1	89	129	11.1382
(((.((((((((((((((((...))))...))).))))..	chr19:1605260-1605546(-)$1	1	231	271	11.4302
((..(((((....((((((((((.((.(((((((((((..	chr6:33382578-33382941(+)$1	1	43	83	9.7393

#PSSM
e : 0.20	d : 0.18	c : 0.14	f : 0.09	! : 0.05	i : 0.03	= : 0.03	] : 0.03	[ : 0.03	b : 0.03	g : 0.03	a : 0.01	# : 0.01	B : 0.01	( : 0.01	h : 0.01	
d : 0.20	e : 0.18	c : 0.16	[ : 0.07	f : 0.07	b : 0.07	i : 0.03	= : 0.03	g : 0.03	# : 0.01	! : 0.01	B : 0.01	( : 0.01	a : 0.01	h : 0.01	
e : 0.20	d : 0.14	c : 0.14	f : 0.09	b : 0.09	! : 0.05	[ : 0.05	i : 0.03	= : 0.03	g : 0.03	a : 0.01	# : 0.01	] : 0.01	( : 0.01	" : 0.01	
[ : 0.31	e : 0.14	c : 0.11	! : 0.09	d : 0.07	b : 0.05	i : 0.03	f : 0.03	g : 0.03	" : 0.03	# : 0.01	( : 0.01	= : 0.01	
e : 0.29	d : 0.18	c : 0.09	[ : 0.07	! : 0.07	g : 0.05	" : 0.05	i : 0.03	f : 0.03	a : 0.03	b : 0.03	= : 0.01	
e : 0.29	d : 0.24	c : 0.12	b : 0.07	! : 0.05	g : 0.05	i : 0.03	f : 0.03	" : 0.03	[ : 0.03	
e : 0.35	d : 0.29	c : 0.12	g : 0.07	b : 0.05	! : 0.03	i : 0.01	f : 0.01	" : 0.01	
e : 0.33	d : 0.29	[ : 0.12	c : 0.09	g : 0.07	f : 0.03	b : 0.01	" : 0.01	
e : 0.33	d : 0.18	[ : 0.07	! : 0.07	g : 0.07	c : 0.07	" : 0.07	b : 0.03	# : 0.03	a : 0.01	f : 0.01	
e : 0.20	# : 0.18	d : 0.12	" : 0.11	! : 0.09	c : 0.09	[ : 0.07	g : 0.05	b : 0.01	f : 0.01	a : 0.01	
e : 0.20	# : 0.20	c : 0.14	" : 0.14	d : 0.09	! : 0.07	g : 0.03	[ : 0.03	f : 0.01	a : 0.01	b : 0.01	
# : 0.20	d : 0.14	[ : 0.12	c : 0.12	e : 0.12	" : 0.09	! : 0.07	b : 0.03	g : 0.01	a : 0.01	f : 0.01	
c : 0.16	d : 0.16	# : 0.16	e : 0.14	a : 0.07	! : 0.05	[ : 0.05	b : 0.05	" : 0.05	f : 0.03	g : 0.01	
d : 0.31	e : 0.18	c : 0.14	[ : 0.14	! : 0.07	b : 0.05	# : 0.01	f : 0.01	o : 0.01	= : 0.01	
d : 0.46	e : 0.20	c : 0.12	! : 0.05	b : 0.03	[ : 0.03	o : 0.03	f : 0.01	= : 0.01	
d : 0.46	e : 0.16	[ : 0.07	c : 0.07	o : 0.05	a : 0.03	r : 0.01	b : 0.01	n : 0.01	f : 0.01	! : 0.01	q : 0.01	= : 0.01	
d : 0.49	e : 0.16	o : 0.12	c : 0.07	r : 0.03	n : 0.01	f : 0.01	[ : 0.01	q : 0.01	= : 0.01	
d : 0.33	o : 0.22	e : 0.12	c : 0.07	n : 0.07	r : 0.03	[ : 0.03	l : 0.01	f : 0.01	b : 0.01	q : 0.01	= : 0.01	
o : 0.33	d : 0.16	n : 0.11	m : 0.11	c : 0.07	e : 0.05	r : 0.03	l : 0.03	a : 0.01	b : 0.01	q : 0.01	= : 0.01	
o : 0.31	l : 0.24	m : 0.12	n : 0.11	d : 0.07	r : 0.03	c : 0.01	[ : 0.01	a : 0.01	q : 0.01	= : 0.01	
o : 0.29	l : 0.25	m : 0.16	n : 0.09	r : 0.03	c : 0.03	d : 0.01	a : 0.01	2 : 0.01	e : 0.01	q : 0.01	= : 0.01	
o : 0.27	l : 0.24	m : 0.20	n : 0.09	r : 0.03	d : 0.03	c : 0.01	b : 0.01	2 : 0.01	e : 0.01	q : 0.01	= : 0.01	
o : 0.20	d : 0.18	e : 0.12	c : 0.11	m : 0.09	a : 0.07	l : 0.03	r : 0.03	n : 0.03	b : 0.03	f : 0.01	q : 0.01	= : 0.01	
d : 0.35	e : 0.16	o : 0.11	] : 0.09	c : 0.09	m : 0.07	r : 0.03	b : 0.01	f : 0.01	4 : 0.01	[ : 0.01	
d : 0.61	e : 0.16	c : 0.09	m : 0.03	] : 0.01	r : 0.01	f : 0.01	4 : 0.01	b : 0.01	
d : 0.64	e : 0.16	2 : 0.05	c : 0.03	f : 0.01	4 : 0.01	] : 0.01	a : 0.01	b : 0.01	
d : 0.51	e : 0.16	] : 0.12	c : 0.05	2 : 0.05	f : 0.01	4 : 0.01	a : 0.01	[ : 0.01	
d : 0.38	e : 0.12	3 : 0.11	c : 0.09	] : 0.09	b : 0.05	a : 0.03	5 : 0.01	f : 0.01	8 : 0.01	4 : 0.01	= : 0.01	
2 : 0.18	3 : 0.12	] : 0.12	e : 0.12	d : 0.11	c : 0.07	4 : 0.07	b : 0.05	a : 0.03	g : 0.01	5 : 0.01	8 : 0.01	= : 0.01	
2 : 0.20	e : 0.16	3 : 0.14	c : 0.09	] : 0.09	d : 0.09	4 : 0.07	f : 0.03	g : 0.01	5 : 0.01	8 : 0.01	b : 0.01	= : 0.01	
e : 0.33	c : 0.20	d : 0.09	4 : 0.07	b : 0.05	3 : 0.03	g : 0.03	2 : 0.03	f : 0.03	] : 0.03	5 : 0.01	8 : 0.01	= : 0.01	
e : 0.35	c : 0.18	d : 0.11	4 : 0.07	b : 0.05	3 : 0.03	g : 0.03	2 : 0.03	f : 0.03	] : 0.01	5 : 0.01	8 : 0.01	= : 0.01	
e : 0.33	c : 0.22	d : 0.14	2 : 0.05	g : 0.03	4 : 0.03	3 : 0.03	f : 0.03	b : 0.03	= : 0.03	8 : 0.01	
e : 0.29	3 : 0.12	d : 0.11	] : 0.09	c : 0.09	2 : 0.05	g : 0.05	4 : 0.05	f : 0.03	= : 0.03	8 : 0.01	b : 0.01	
e : 0.27	d : 0.18	3 : 0.14	c : 0.09	g : 0.07	4 : 0.05	2 : 0.03	f : 0.03	= : 0.03	a : 0.01	b : 0.01	8 : 0.01	
d : 0.18	] : 0.18	3 : 0.14	e : 0.11	g : 0.07	2 : 0.07	4 : 0.05	c : 0.05	b : 0.03	= : 0.03	a : 0.01	f : 0.01	
d : 0.24	e : 0.22	c : 0.09	b : 0.07	g : 0.07	3 : 0.05	] : 0.05	2 : 0.05	4 : 0.03	= : 0.03	a : 0.01	f : 0.01	: : 0.01	
d : 0.29	e : 0.22	c : 0.12	g : 0.09	b : 0.07	= : 0.05	f : 0.03	] : 0.03	4 : 0.01	3 : 0.01	: : 0.01	
d : 0.24	e : 0.22	c : 0.11	] : 0.09	g : 0.09	f : 0.07	= : 0.03	: : 0.01	2 : 0.01	a : 0.01	b : 0.01	4 : 0.01	5 : 0.01	# : 0.01	
e : 0.24	d : 0.20	f : 0.12	c : 0.11	g : 0.09	: : 0.03	2 : 0.03	] : 0.03	= : 0.03	[ : 0.01	3 : 0.01	5 : 0.01	# : 0.01	

#score	660.594119543602
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_UTR_m3_run2.txt

#BEAR
dddvvvvvvvvvvvvvdddd	chr14:21927716-21928003(-)$1	287	5	25	22.0038
ffffuuuuuuuuuuuuffff	chr6:163994724-163994961(+)$1	237	51	71	21.9976
!ddddtttttttttttdddd	chr3:183888935-183889157(+)$1	222	69	89	21.6294
eeeeuuuuuuuuuuuueeee	chr3:56655045-56655288(-)$1	243	220	240	22.5227
fffbbvvvvvvvvvvvvvbb	chr1:109816500-109816803(+)$1	303	44	64	20.0563
gggguuuuuuuuuuuugggg	chr21:45878380-45878671(+)$1	291	148	168	22.5879
dddvvvvvvvvvvvvvdddd	chr2:209170055-209170306(+)$1	251	119	139	22.0038
gggggtttttttttttgggg	chr9:95475773-95476064(-)$1	291	222	242	22.2074
e!!bbuuuuuuuuuuuubb2	chr2:153499934-153500152(+)$1	218	110	130	20.3933
d"""attttttttttta333	chr20:57475226-57475521(+)$1	295	158	178	21.8794
=====ttttttttttt====	chr2:20111165-20111430(-)$1	265	78	98	22.1167
ffffwwwwwwwwwwwwwwff	chr10:93622986-93623240(+)$1	254	61	81	20.4409
ee[bbwwwwwwwwwwwwwwb	chr5:34813513-34813803(+)$1	290	202	222	18.8929
eeeeuuuuuuuuuuuueeee	chr1:150117244-150117521(+)$1	277	234	254	22.5227
[cccvvvvvvvvvvvvvccc	chr22:29451115-29451354(+)$1	239	33	53	22.4963
ffffuuuuuuuuuuuuffff	chr5:14488553-14488823(+)$1	270	62	82	21.9976
gggggtttttttttttgggg	chr17:29580055-29580358(+)$1	303	155	175	22.2074
cc[bbtttttttttttbbcc	chr4:100123770-100124019(-)$1	249	43	63	21.2394
eeeeuuuuuuuuuuuueeee	chr3:194997109-194997393(-)$1	284	224	244	22.5227
eeevvvvvvvvvvvvveeee	chr8:103839399-103839674(-)$1	275	83	103	22.6178
!!cccuuuuuuuuuuuuccc	chr1:156213332-156213619(-)$1	287	73	93	21.7110
hhhhuuuuuuuuuuuuhhhh	chr1:54512979-54513238(-)$1	259	228	248	21.1663
bbvvvvvvvvvvvvvbb]dd	chr12:122973909-122974183(-)$1	274	219	239	19.0671
eeeeettttttttttteeee	chr3:183888957-183889196(+)$1	239	139	159	22.2198
[ddddvvvvvvvvvvvvvdd	chr14:31086929-31087138(+)$1	209	156	176	20.8150
ffffftttttttttttffff	chr1:160184899-160185174(+)$1	275	101	121	21.6796
gggvvvvvvvvvvvvvgggg	chr8:48974423-48974746(+)$1	323	153	173	22.6636
ffffftttttttttttffff	chr3:98240499-98240804(-)$1	305	67	87	21.6796
eeeeettttttttttteeee	chr4:85591522-85591832(-)$1	310	0	20	22.2198
dddvvvvvvvvvvvvvdddd	chr11:102318889-102319162(-)$1	273	234	254	22.0038
eeeeettttttttttteeee	chr7:155573169-155573534(+)$1	365	44	64	22.2198
gggguuuuuuuuuuuugggg	chr5:14488417-14488687(+)$1	270	23	43	22.5879
ffffuuuuuuuuuuuuffff	chr11:96075073-96075348(-)$1	275	62	82	21.9976
ggwwwwwwwwwwwwwwgggg	chr7:26230751-26230996(-)$1	245	98	118	20.9240
[dddduuuuuuuuuuuuddd	chr12:98931297-98931549(+)$1	252	80	100	21.0916
eeeeuuuuuuuuuuuueeee	chr5:14488488-14488753(+)$1	265	127	147	22.5227
dddduuuuuuuuuuuudddd	chr11:2150301-2150515(-)$1	214	135	155	21.8476
ebbvvvvvvvvvvvvvbb]e	chr14:23079808-23080125(+)$1	317	67	87	21.3879
gggguuuuuuuuuuuugggg	chr17:25949089-25949339(+)$1	250	156	176	22.5879
eeeeettttttttttteeee	chr4:73941076-73941322(-)$1	246	146	166	22.2198
dddduuuuuuuuuuuudddd	chr11:2150286-2150494(-)$1	208	114	134	21.8476
[cccvvvvvvvvvvvvvccc	chr7:158433524-158433819(-)$1	295	238	258	22.4963
eeeeettttttttttteeee	chr22:43266371-43266629(-)$1	258	179	199	22.2198
bbccctttttttttttccc]	chr2:54889217-54889431(+)$1	214	37	57	21.6955
:ddddtttttttttttdddd	chr11:118267372-118267619(+)$1	247	20	40	20.5253
d"""attttttttttta333	chr20:57475338-57475584(+)$1	246	46	66	21.8794
::cccuuuuuuuuuuuuccc	chr10:24834819-24835125(+)$1	306	105	125	19.5137
hhhhhttttttttttthhhh	chr1:114520147-114520412(+)$1	265	213	233	20.6285
ffffuuuuuuuuuuuuffff	chr13:37584652-37584969(-)$1	317	231	251	21.9976
gggggtttttttttttgggg	chr2:55254496-55254784(-)$1	288	151	171	22.2074
hhhwwwwwwwwwwwwwwhhh	chr12:30872373-30872673(-)$1	300	179	199	20.3126
eeevvvvvvvvvvvvveeee	chr16:20745560-20745836(+)$1	276	104	124	22.6178
ffffuuuuuuuuuuuuffff	chr4:128607240-128607576(+)$1	336	100	120	21.9976
hhhhuuuuuuuuuuuuhhhh	chr1:41200344-41200642(+)$1	298	180	200	21.1663
e[ccctttttttttttccc]	chr3:37029744-37030059(-)$1	315	277	297	22.3424
ddwwwwwwwwwwwwwwdddd	chr2:73171839-73172096(-)$1	257	148	168	20.3695
gggvvvvvvvvvvvvvgggg	chr9:125609161-125609435(-)$1	274	20	40	22.6636
eeewwwwwwwwwwwwwweee	chr4:77956922-77957218(+)$1	296	98	118	21.2784
""cccuuuuuuuuuuuuccc	chr17:17089206-17089486(+)$1	280	133	153	21.4293
gggvvvvvvvvvvvvvgggg	chr9:80032217-80032508(+)$1	291	182	202	22.6636

#otherMatches

#Seq PSSM
CAGGCUAAUCUACUUACUGA	chr14:21927716-21928003(-)$1	287	5	25	22.0038
CUGUUUCUAUUAACCCACAG	chr6:163994724-163994961(+)$1	237	51	71	21.9976
CUUUACCCCACAUUACUGAA	chr3:183888935-183889157(+)$1	222	69	89	21.6294
aggcacccaccaccacgccu	chr3:56655045-56655288(-)$1	243	220	240	22.5227
UUCCUGUUUCCUUCGUCUGG	chr1:109816500-109816803(+)$1	303	44	64	20.0563
accuuacuucacauucaggu	chr21:45878380-45878671(+)$1	291	148	168	22.5879
GAAAAUCAUUCACACAUUCC	chr2:209170055-209170306(+)$1	251	119	139	22.0038
GUGCUCGCGCCCUCCCAGCA	chr9:95475773-95476064(-)$1	291	222	242	22.2074
GAUGCUCUUAAAAGGUUGCU	chr2:153499934-153500152(+)$1	218	110	130	20.3933
ACGUCUCUCUCACUCUGUUC	chr20:57475226-57475521(+)$1	295	158	178	21.8794
CAUUUGUUCUAUACCAGAAU	chr2:20111165-20111430(-)$1	265	78	98	22.1167
AUUGAUUCUAACAAACUGUA	chr10:93622986-93623240(+)$1	254	61	81	20.4409
GAACUCCAAAAAAACGCAAA	chr5:34813513-34813803(+)$1	290	202	222	18.8929
ACAAUAAAAAUCCAUUUUGU	chr1:150117244-150117521(+)$1	277	234	254	22.5227
UCAUCCUUUUUUGUCCAAUG	chr22:29451115-29451354(+)$1	239	33	53	22.4963
GGUUUCUUCCAUUUCCAACC	chr5:14488553-14488823(+)$1	270	62	82	21.9976
UUUGGUUUGAUUUAUCCCAA	chr17:29580055-29580358(+)$1	303	155	175	22.2074
UGCUCUUCUAUUUCCUGACA	chr4:100123770-100124019(-)$1	249	43	63	21.2394
AGCAGUCAUUUGCAAAUGCU	chr3:194997109-194997393(-)$1	284	224	244	22.5227
UUAAUUCUUUUCUUACUAAA	chr8:103839399-103839674(-)$1	275	83	103	22.6178
AACUAACACGACUAACCUAG	chr1:156213332-156213619(-)$1	287	73	93	21.7110
GCUGUUUUCAAUUUGUCAGU	chr1:54512979-54513238(-)$1	259	228	248	21.1663
GUGCCAUUAAAAACAACAAG	chr12:122973909-122974183(-)$1	274	219	239	19.0671
GCUGUAGUCGCCUCCAAUAG	chr3:183888957-183889196(+)$1	239	139	159	22.2198
CUUAAUCUAUUAACAUAUUU	chr14:31086929-31087138(+)$1	209	156	176	20.8150
CAGAGUCUAGUAGUUUCUCU	chr1:160184899-160185174(+)$1	275	101	121	21.6796
AUUCUCUACUCUAACAAAUA	chr8:48974423-48974746(+)$1	323	153	173	22.6636
GAAGCCAAUUUCCACUGCUU	chr3:98240499-98240804(-)$1	305	67	87	21.6796
UGUUCUUUAAAGACUUGAAU	chr4:85591522-85591832(-)$1	310	0	20	22.2198
CUGCCCUUAAUCUUCACAGU	chr11:102318889-102319162(-)$1	273	234	254	22.0038
UGGGCUCUCCCUCUCUGUCC	chr7:155573169-155573534(+)$1	365	44	64	22.2198
GCUGUUCUCACUAACUCGGC	chr5:14488417-14488687(+)$1	270	23	43	22.5879
AACUUAUCCUCCCCCCAGUU	chr11:96075073-96075348(-)$1	275	62	82	21.9976
UAAUUUUUAUAAACCCUGUU	chr7:26230751-26230996(-)$1	245	98	118	20.9240
ACAGGUAUAAAUAACCUCCU	chr12:98931297-98931549(+)$1	252	80	100	21.0916
GGUUUCUUCCAUUUCCAACC	chr5:14488488-14488753(+)$1	265	127	147	22.5227
GCUUGCAAUCCCAAUAAAGC	chr11:2150301-2150515(-)$1	214	135	155	21.8476
GGAGAAAGCCAGAGAGUCAC	chr14:23079808-23080125(+)$1	317	67	87	21.3879
CAUGACUGAUUGCUCCCGUG	chr17:25949089-25949339(+)$1	250	156	176	22.5879
UUUACCACUAAUACCAGUAA	chr4:73941076-73941322(-)$1	246	146	166	22.2198
GCUUGCAAUCCCAAUAAAGC	chr11:2150286-2150494(-)$1	208	114	134	21.8476
uacauaauugaauauauugu	chr7:158433524-158433819(-)$1	295	238	258	22.4963
CUCGUCUACUGUUUUAAUGA	chr22:43266371-43266629(-)$1	258	179	199	22.2198
AGCCACUAAAGCACUCUGGA	chr2:54889217-54889431(+)$1	214	37	57	21.6955
AGAAAUCAUCACUAAUUUUC	chr11:118267372-118267619(+)$1	247	20	40	20.5253
ACGUCUCUCUCACUCUGUUC	chr20:57475338-57475584(+)$1	246	46	66	21.8794
UUGCUUCUAACCCUCUCAGC	chr10:24834819-24835125(+)$1	306	105	125	19.5137
UACAUAAUAUGGUAAAAUGU	chr1:114520147-114520412(+)$1	265	213	233	20.6285
AGAGAUUCCAGCUCUCCUCU	chr13:37584652-37584969(-)$1	317	231	251	21.9976
CCAUGGUCACAGAAAAUAUG	chr2:55254496-55254784(-)$1	288	151	171	22.2074
UGUAUAAAUUUUGAAUAAUA	chr12:30872373-30872673(-)$1	300	179	199	20.3126
AUAUUAAUAAUCCUCUUAUC	chr16:20745560-20745836(+)$1	276	104	124	22.6178
ACUGACUAUAUACUAACAGU	chr4:128607240-128607576(+)$1	336	100	120	21.9976
UCUCUUUUUUCCUGGUGAGA	chr1:41200344-41200642(+)$1	298	180	200	21.1663
ucaggccaucaaccuaccua	chr3:37029744-37030059(-)$1	315	277	297	22.3424
ACAAAAAAAUAAUCAAGUGC	chr2:73171839-73172096(-)$1	257	148	168	20.3695
ACCUGCCAACCUUAUUGGUA	chr9:125609161-125609435(-)$1	274	20	40	22.6636
GUUUUUUCCCCUCUACUAAC	chr4:77956922-77957218(+)$1	296	98	118	21.2784
CACCACAAAACAUUCUAUGG	chr17:17089206-17089486(+)$1	280	133	153	21.4293
AUUGAAUCAAACCACAAGUU	chr9:80032217-80032508(+)$1	291	182	202	22.6636

#DB
(((.............))))	chr14:21927716-21928003(-)$1	1	5	25	22.0038
((((............))))	chr6:163994724-163994961(+)$1	1	51	71	21.9976
.((((...........))))	chr3:183888935-183889157(+)$1	1	69	89	21.6294
((((............))))	chr3:56655045-56655288(-)$1	1	220	240	22.5227
(((((.............))	chr1:109816500-109816803(+)$1	1	44	64	20.0563
((((............))))	chr21:45878380-45878671(+)$1	1	148	168	22.5879
(((.............))))	chr2:209170055-209170306(+)$1	1	119	139	22.0038
(((((...........))))	chr9:95475773-95476064(-)$1	1	222	242	22.2074
(..((............)).	chr2:153499934-153500152(+)$1	1	110	130	20.3933
(...(...........)...	chr20:57475226-57475521(+)$1	1	158	178	21.8794
(((((...........))))	chr2:20111165-20111430(-)$1	1	78	98	22.1167
((((..............))	chr10:93622986-93623240(+)$1	1	61	81	20.4409
((.((..............)	chr5:34813513-34813803(+)$1	1	202	222	18.8929
((((............))))	chr1:150117244-150117521(+)$1	1	234	254	22.5227
.(((.............)))	chr22:29451115-29451354(+)$1	1	33	53	22.4963
((((............))))	chr5:14488553-14488823(+)$1	1	62	82	21.9976
(((((...........))))	chr17:29580055-29580358(+)$1	1	155	175	22.2074
((.((...........))))	chr4:100123770-100124019(-)$1	1	43	63	21.2394
((((............))))	chr3:194997109-194997393(-)$1	1	224	244	22.5227
(((.............))))	chr8:103839399-103839674(-)$1	1	83	103	22.6178
..(((............)))	chr1:156213332-156213619(-)$1	1	73	93	21.7110
((((............))))	chr1:54512979-54513238(-)$1	1	228	248	21.1663
((.............)).))	chr12:122973909-122974183(-)$1	1	219	239	19.0671
(((((...........))))	chr3:183888957-183889196(+)$1	1	139	159	22.2198
.((((.............))	chr14:31086929-31087138(+)$1	1	156	176	20.8150
(((((...........))))	chr1:160184899-160185174(+)$1	1	101	121	21.6796
(((.............))))	chr8:48974423-48974746(+)$1	1	153	173	22.6636
(((((...........))))	chr3:98240499-98240804(-)$1	1	67	87	21.6796
(((((...........))))	chr4:85591522-85591832(-)$1	1	0	20	22.2198
(((.............))))	chr11:102318889-102319162(-)$1	1	234	254	22.0038
(((((...........))))	chr7:155573169-155573534(+)$1	1	44	64	22.2198
((((............))))	chr5:14488417-14488687(+)$1	1	23	43	22.5879
((((............))))	chr11:96075073-96075348(-)$1	1	62	82	21.9976
((..............))))	chr7:26230751-26230996(-)$1	1	98	118	20.9240
.((((............)))	chr12:98931297-98931549(+)$1	1	80	100	21.0916
((((............))))	chr5:14488488-14488753(+)$1	1	127	147	22.5227
((((............))))	chr11:2150301-2150515(-)$1	1	135	155	21.8476
(((.............)).)	chr14:23079808-23080125(+)$1	1	67	87	21.3879
((((............))))	chr17:25949089-25949339(+)$1	1	156	176	22.5879
(((((...........))))	chr4:73941076-73941322(-)$1	1	146	166	22.2198
((((............))))	chr11:2150286-2150494(-)$1	1	114	134	21.8476
.(((.............)))	chr7:158433524-158433819(-)$1	1	238	258	22.4963
(((((...........))))	chr22:43266371-43266629(-)$1	1	179	199	22.2198
(((((...........))).	chr2:54889217-54889431(+)$1	1	37	57	21.6955
.((((...........))))	chr11:118267372-118267619(+)$1	1	20	40	20.5253
(...(...........)...	chr20:57475338-57475584(+)$1	1	46	66	21.8794
..(((............)))	chr10:24834819-24835125(+)$1	1	105	125	19.5137
(((((...........))))	chr1:114520147-114520412(+)$1	1	213	233	20.6285
((((............))))	chr13:37584652-37584969(-)$1	1	231	251	21.9976
(((((...........))))	chr2:55254496-55254784(-)$1	1	151	171	22.2074
(((..............)))	chr12:30872373-30872673(-)$1	1	179	199	20.3126
(((.............))))	chr16:20745560-20745836(+)$1	1	104	124	22.6178
((((............))))	chr4:128607240-128607576(+)$1	1	100	120	21.9976
((((............))))	chr1:41200344-41200642(+)$1	1	180	200	21.1663
(.(((...........))).	chr3:37029744-37030059(-)$1	1	277	297	22.3424
((..............))))	chr2:73171839-73172096(-)$1	1	148	168	20.3695
(((.............))))	chr9:125609161-125609435(-)$1	1	20	40	22.6636
(((..............)))	chr4:77956922-77957218(+)$1	1	98	118	21.2784
..(((............)))	chr17:17089206-17089486(+)$1	1	133	153	21.4293
(((.............))))	chr9:80032217-80032508(+)$1	1	182	202	22.6636

#PSSM
e : 0.26	g : 0.16	f : 0.15	d : 0.13	[ : 0.06	h : 0.06	! : 0.03	b : 0.03	: : 0.03	= : 0.01	c : 0.01	" : 0.01	
e : 0.21	d : 0.16	g : 0.16	f : 0.15	h : 0.06	" : 0.05	c : 0.05	b : 0.05	! : 0.03	= : 0.01	: : 0.01	[ : 0.01	
e : 0.19	d : 0.15	f : 0.15	g : 0.15	c : 0.11	h : 0.06	" : 0.03	[ : 0.03	w : 0.03	! : 0.01	= : 0.01	v : 0.01	b : 0.01	
v : 0.16	e : 0.15	f : 0.13	c : 0.11	d : 0.09	g : 0.09	b : 0.06	w : 0.06	h : 0.05	" : 0.03	= : 0.01	
u : 0.26	v : 0.19	w : 0.08	c : 0.08	e : 0.08	d : 0.06	b : 0.06	g : 0.05	a : 0.03	f : 0.03	= : 0.01	h : 0.01	
u : 0.35	t : 0.31	v : 0.23	w : 0.09	
u : 0.35	t : 0.31	v : 0.23	w : 0.09	
u : 0.35	t : 0.31	v : 0.23	w : 0.09	
u : 0.35	t : 0.31	v : 0.23	w : 0.09	
u : 0.35	t : 0.31	v : 0.23	w : 0.09	
u : 0.35	t : 0.31	v : 0.23	w : 0.09	
u : 0.35	t : 0.31	v : 0.23	w : 0.09	
u : 0.35	t : 0.31	v : 0.23	w : 0.09	
u : 0.35	t : 0.31	v : 0.23	w : 0.09	
u : 0.35	t : 0.31	v : 0.23	w : 0.09	
u : 0.35	t : 0.31	v : 0.21	w : 0.09	b : 0.01	
e : 0.18	g : 0.16	d : 0.13	f : 0.11	u : 0.08	v : 0.06	w : 0.06	b : 0.05	h : 0.05	a : 0.03	c : 0.03	= : 0.01	
e : 0.19	g : 0.16	d : 0.15	f : 0.11	c : 0.11	h : 0.06	b : 0.05	v : 0.03	3 : 0.03	w : 0.03	= : 0.01	] : 0.01	
e : 0.19	d : 0.18	g : 0.16	f : 0.13	c : 0.13	h : 0.06	b : 0.03	3 : 0.03	= : 0.01	w : 0.01	] : 0.01	
e : 0.21	d : 0.18	g : 0.16	f : 0.13	c : 0.09	h : 0.06	b : 0.03	3 : 0.03	] : 0.03	2 : 0.01	= : 0.01	

#score	1300.8032421281946
#seq	60
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_UTR_m1_run1.txt

#BEAR
ffff^^^^^^^^^^^^^^^^^^^^f	chr9:95033719-95034012(-)$1	293	50	75	17.1528
dcccxxxxxxxxxxxxxxxccc]dd	chrX:41057698-41057993(+)$1	295	91	116	18.7585
b[ccc[bbtttttttttttbb]ccc	chrX:153583193-153583464(-)$1	271	150	175	19.4395
deeeeeattttttttttta]eeeee	chr3:184042638-184042904(+)$1	266	164	189	20.4495
======yyyyyyyyyyyyyyyy===	chr17:45734128-45734382(+)$1	254	68	93	20.7748
[bbdddduuuuuuuuuuuudddd]b	chr9:95033167-95033431(-)$1	264	229	254	21.0498
ffffffvvvvvvvvvvvvvffffff	chr2:61719072-61719315(-)$1	243	90	115	22.0980
fffffwwwwwwwwwwwwwwffffff	chr5:137895506-137895787(-)$1	281	34	59	21.6590
::eeeeeuuuuuuuuuuuueeeeeC	chrX:153587646-153587868(-)$1	222	149	174	19.3754
b[cccwwwwwwwwwwwwwwccc22b	chrX:153581840-153582064(-)$1	224	81	106	22.5421
$$$bbwwwwwwwwwwwwwwbb333=	chr3:184044211-184044513(+)$1	302	74	99	21.3526
b[eeeeeuuuuuuuuuuuueeeee]	chr1:19443668-19443902(-)$1	234	65	90	22.1926
b[cccwwwwwwwwwwwwwwccc22b	chrX:153581822-153582024(-)$1	202	41	66	22.5421
!eeeeeattttttttttta]eeeee	chr5:140956941-140957175(-)$1	234	108	133	20.6997
hhhhhwwwwwwwwwwwwwwhhhhhh	chr10:75526064-75526323(+)$1	259	9	34	19.6814
eeee^^^^^^^^^^^^^^^^^^^^^	chr2:48030463-48030718(+)$1	255	41	66	17.0313
ffffffvvvvvvvvvvvvvffffff	chr16:58576079-58576334(-)$1	255	208	233	22.0980
ggg!!ccctttttttttttcccggg	chr16:9016971-9017291(-)$1	320	204	229	20.7872
ddddyyyyyyyyyyyyyyyydddd]	chr6:64421776-64422067(+)$1	291	78	103	19.4989
b::ddddwwwwwwwwwwwwwwdddd	chr16:24104010-24104311(+)$1	301	142	167	18.9158
ggggggguuuuuuuuuuuugggggg	chrX:153585786-153586009(-)$1	223	110	135	22.3825
ffff^^^^^^^^^^^^^^^^^^^^f	chr2:61715622-61715875(-)$1	253	182	207	17.1528
b[cccwwwwwwwwwwwwwwccc22b	chrX:153581824-153582040(-)$1	216	57	82	22.5421
======yyyyyyyyyyyyyyyy===	chr3:33877442-33877859(+)$1	417	33	58	20.7748
&&cccwwwwwwwwwwwwwwccc777	chr3:127323719-127324022(+)$1	303	196	221	19.9810
d!!cccvvvvvvvvvvvvvccc22d	chrX:153582447-153582693(-)$1	246	143	168	23.1181
fff!!bbvvvvvvvvvvvvvbb22f	chrX:41055499-41055712(+)$1	213	84	109	21.7831
::eeeeeuuuuuuuuuuuueeeeeC	chrX:153587668-153587874(-)$1	206	155	180	19.3754
%ffffffuuuuuuuuuuuuffffff	chr1:19439094-19439349(-)$1	255	11	36	21.1991
beeeeevvvvvvvvvvvvveeeee4	chr17:57741133-57741396(+)$1	263	8	33	22.4013
eeeeeeeuuuuuuuuuuuueeeeeD	chr17:57737768-57738045(+)$1	277	64	89	20.9501
b[cccwwwwwwwwwwwwwwccc]bb	chr3:184043002-184043261(+)$1	259	39	64	22.3927
gggggggtttttttttttggggggg	chr3:184052546-184052803(+)$1	257	204	229	19.7802
fff!!bbvvvvvvvvvvvvvbb22f	chrX:41055478-41055699(+)$1	221	105	130	21.7831
dd[cccvvvvvvvvvvvvvccc]dd	chr3:184052427-184052731(+)$1	304	153	178	22.8964
ccc[cccuuuuuuuuuuuuccc22c	chrX:153581378-153581610(-)$1	232	33	58	22.8534
eeeee[awwwwwwwwwwwwwwa]ee	chrX:153590685-153590893(-)$1	208	168	193	22.1429
ggggggguuuuuuuuuuuugggggg	chr2:61720022-61720289(-)$1	267	10	35	22.3825
"ffffffuuuuuuuuuuuuffffff	chr9:114134609-114134882(-)$1	273	186	211	21.7675
gggggggvvvvvvvvvvvvvggggg	chr5:137902589-137902887(-)$1	298	206	231	22.3751
'eeeeevvvvvvvvvvvvveeeee=	chr3:184049446-184049694(+)$1	248	102	127	22.1339
####ccc^^^^^^^^^^^^^^^^^^	chr5:154172183-154172416(+)$1	233	56	81	16.6213
gggg^^^^^^^^^^^^^^^^^^ggg	chr19:8550385-8550711(+)$1	326	76	101	17.6472
::eeeeeuuuuuuuuuuuueeeeeb	chrX:153587524-153587787(-)$1	263	68	93	20.2967
####ccc^^^^^^^^^^^^^^^^^^	chr5:154172216-154172456(+)$1	240	23	48	16.6213
eeebbxxxxxxxxxxxxxxxbb]ee	chrX:153581104-153581334(-)$1	230	151	176	18.2353
ffffffvvvvvvvvvvvvvffffff	chrX:153588171-153588372(-)$1	201	43	68	22.0980
dd[cccvvvvvvvvvvvvvccc]dd	chrX:153579868-153580121(-)$1	253	225	250	22.8964
hh[bb[awwwwwwwwwwwwwwa]bb	chr14:102505284-102505563(+)$1	279	231	256	21.0757
ggggggguuuuuuuuuuuugggggg	chrX:153585717-153585986(-)$1	269	87	112	22.3825
iiii^^^^^^^^^^^^^^^^^^iii	chr16:8994315-8994574(-)$1	259	57	82	17.5078
ggggggguuuuuuuuuuuugggggg	chrX:153585809-153586063(-)$1	254	164	189	22.3825
[a[ddddwwwwwwwwwwwwwwdddd	chr9:95025191-95025434(-)$1	243	22	47	21.1157
ffffcccuuuuuuuuuuuuccc]ff	chr6:37142057-37142309(+)$1	252	200	225	22.8514
eee!!ccctttttttttttccc]ee	chrX:153581693-153581911(-)$1	218	86	111	20.6610
::ddddvvvvvvvvvvvvvddddff	chr17:29657272-29657612(+)$1	340	77	102	20.0982
!!ddddwwwwwwwwwwwwwwdddd]	chr1:33137951-33138213(+)$1	262	182	207	21.7087
ii"""bbuuuuuuuuuuuubb333i	chr16:58559799-58560032(-)$1	233	20	45	22.1223
"""dddduuuuuuuuuuuudddd33	chr9:114137326-114137578(-)$1	252	40	65	21.7992
eeee^^^^^^^^^^^^^^^^^^eee	chr17:57738786-57739067(+)$1	281	127	152	17.2569

#otherMatches

#Seq PSSM
UUCCCUCUCUUUUGCCUUUUCUCAG	chr9:95033719-95034012(-)$1	293	50	75	17.1528
GAUGAUUUCAUAUUUCCUGCAUCCA	chrX:41057698-41057993(+)$1	295	91	116	18.7585
ACGUGGUGGAGAAUGAGGACGGCAC	chrX:153583193-153583464(-)$1	271	150	175	19.4395
UGUGGUCAAACUGCUUAAGAACCAU	chr3:184042638-184042904(+)$1	266	164	189	20.4495
UGUAUCUUUUGUCUUUUUUUUUGGU	chr17:45734128-45734382(+)$1	254	68	93	20.7748
UGCCCAUUCCAUCUUAUUUGUGGUG	chr9:95033167-95033431(-)$1	264	229	254	21.0498
UUGAUGAAAUUUUGAACAACAUUAA	chr2:61719072-61719315(-)$1	243	90	115	22.0980
GGCAGAGCCCCAAGUAAAGCUGUCA	chr5:137895506-137895787(-)$1	281	34	59	21.6590
AUGUCCUGCAUGGAUAACAAGGACG	chrX:153587646-153587868(-)$1	222	149	174	19.3754
CAUUCUAGUCAAGUACAAUGAACAG	chrX:153581840-153582064(-)$1	224	81	106	22.5421
UAUGAUUCUACUCCCCUUUUCUUCU	chr3:184044211-184044513(+)$1	302	74	99	21.3526
CAGUCACACCAUCAGCAAAGUGACA	chr1:19443668-19443902(-)$1	234	65	90	22.1926
CAUUCUAGUCAAGUACAAUGAACAG	chrX:153581822-153582024(-)$1	202	41	66	22.5421
UUGGUCCGAAAUGACUAUGAGGCCA	chr5:140956941-140957175(-)$1	234	108	133	20.6997
UGGCAAGUCUAGGUAACAAUGUCAC	chr10:75526064-75526323(+)$1	259	9	34	19.6814
GGCUGAUAAAACCCCCAAACGAUGA	chr2:48030463-48030718(+)$1	255	41	66	17.0313
UGGGGCUCUGUCUUUCCCCGUCCCA	chr16:58576079-58576334(-)$1	255	208	233	22.0980
CUGAAUCUGAUUCCACGUAAGACAG	chr16:9016971-9017291(-)$1	320	204	229	20.7872
GGAAUUAGCAAAUAAACCUCUUCCU	chr6:64421776-64422067(+)$1	291	78	103	19.4989
CUGUCAGAUCCCUACGUAAAACUGA	chr16:24104010-24104311(+)$1	301	142	167	18.9158
CACCAUCCUCAUCAAGUACGGUGGU	chrX:153585786-153586009(-)$1	223	110	135	22.3825
AGUAUAAACAAACCACUUCUCUUCU	chr2:61715622-61715875(-)$1	253	182	207	17.1528
CAUUCUAGUCAAGUACAAUGAACAG	chrX:153581824-153582040(-)$1	216	57	82	22.5421
AAAGAGAAAUAAAAUCACCUCCCUC	chr3:33877442-33877859(+)$1	417	33	58	20.7748
ACCGCUUCAAGAACUUCCUGCGCAC	chr3:127323719-127324022(+)$1	303	196	221	19.9810
GGACAUCCGCUAUGACAACAUGCAC	chrX:153582447-153582693(-)$1	246	143	168	23.1181
UCAUUACUCUACUCUUUACUGUUUU	chrX:41055499-41055712(+)$1	213	84	109	21.7831
AUGUCCUGCAUGGAUAACAAGGACG	chrX:153587668-153587874(-)$1	206	155	180	19.3754
GUUGUUGGAAUAUGACCUACAGCAG	chr1:19439094-19439349(-)$1	255	11	36	21.1991
CAACUGCUCAUUUCUAAAACAGUUC	chr17:57741133-57741396(+)$1	263	8	33	22.4013
AUGGCUGUACGUAAUAACUUAGCCG	chr17:57737768-57738045(+)$1	277	64	89	20.9501
CUUUCUCCUUCCUAGCCCCGAAUGG	chr3:184043002-184043261(+)$1	259	39	64	22.3927
GCCGCCUGGACUGCAGGGGGGCGGC	chr3:184052546-184052803(+)$1	257	204	229	19.7802
UCAUUACUCUACUCUUUACUGUUUU	chrX:41055478-41055699(+)$1	221	105	130	21.7831
GUUGGGAGAGUAGCAAGGACCCCGC	chr3:184052427-184052731(+)$1	304	153	178	22.8964
UCCAGGGAUUUCAUUCGUGCCCAAG	chrX:153581378-153581610(-)$1	232	33	58	22.8534
GGCCUUCUCCUCCCACUGCCUGCAG	chrX:153590685-153590893(-)$1	208	168	193	22.1429
UUUGGUUUUGUUUGUUUUUAACUAA	chr2:61720022-61720289(-)$1	267	10	35	22.3825
GCCUGAGUUAAACCUGCUUCUUAGG	chr9:114134609-114134882(-)$1	273	186	211	21.7675
CCAAUGUGGUUAAUAUGUAGACGUU	chr5:137902589-137902887(-)$1	298	206	231	22.3751
ACGUUAGUUCGAGCCCUCAUGACGG	chr3:184049446-184049694(+)$1	248	102	127	22.1339
AACAGGAGAAAGGAGAAGGGAGUGA	chr5:154172183-154172416(+)$1	233	56	81	16.6213
CCUGUGUUUUGUGUCCCUGUUUCAG	chr19:8550385-8550711(+)$1	326	76	101	17.6472
AUGUCCUGCAUGGAUAACAAGGACG	chrX:153587524-153587787(-)$1	263	68	93	20.2967
AACAGGAGAAAGGAGAAGGGAGUGA	chr5:154172216-154172456(+)$1	240	23	48	16.6213
CAACUACAUCAUCAACAUCAAGUUU	chrX:153581104-153581334(-)$1	230	151	176	18.2353
CGGGGGACAGGGACCAGAACCCCCG	chrX:153588171-153588372(-)$1	201	43	68	22.0980
AGAGCCACCGCAGAGACCAGGCCUU	chrX:153579868-153580121(-)$1	253	225	250	22.8964
GACCGUGUCCCAGCAGUACCUCCCG	chr14:102505284-102505563(+)$1	279	231	256	21.0757
CACCAUCCUCAUCAAGUACGGUGGU	chrX:153585717-153585986(-)$1	269	87	112	22.3825
AGUGUAACAAUUUUAUAUCUUUCAC	chr16:8994315-8994574(-)$1	259	57	82	17.5078
CACCAUCCUCAUCAAGUACGGUGGU	chrX:153585809-153586063(-)$1	254	164	189	22.3825
UGAAUAAAUACAGUUUCUUUCUUAU	chr9:95025191-95025434(-)$1	243	22	47	21.1157
UAGGACUAGCACCAUUUUAAGUCCC	chr6:37142057-37142309(+)$1	252	200	225	22.8514
GUGACGACUCCAUGCGUAUGUCCCA	chrX:153581693-153581911(-)$1	218	86	111	20.6610
UACCUUUAAUUUAAAAAUCGAGGGC	chr17:29657272-29657612(+)$1	340	77	102	20.0982
CUUGUAUUCAUUCCUCUCUCUACAU	chr1:33137951-33138213(+)$1	262	182	207	21.7087
CCCCGGAUUCUCACCAAUUUCACUG	chr16:58559799-58560032(-)$1	233	20	45	22.1223
AUGUGGUCCUGACUUAUUUGCCAAG	chr9:114137326-114137578(-)$1	252	40	65	21.7992
GCUCAACAAAUACGAAUCCUUAGAG	chr17:57738786-57739067(+)$1	281	127	152	17.2569

#DB
((((....................)	chr9:95033719-95034012(-)$1	1	50	75	17.1528
((((...............))).))	chrX:41057698-41057993(+)$1	1	91	116	18.7585
(.(((.((...........)).)))	chrX:153583193-153583464(-)$1	1	150	175	19.4395
)((((((...........).)))))	chr3:184042638-184042904(+)$1	1	164	189	20.4495
((((((................)))	chr17:45734128-45734382(+)$1	1	68	93	20.7748
.((((((............)))).)	chr9:95033167-95033431(-)$1	1	229	254	21.0498
((((((.............))))))	chr2:61719072-61719315(-)$1	1	90	115	22.0980
(((((..............))))))	chr5:137895506-137895787(-)$1	1	34	59	21.6590
..(((((............))))))	chrX:153587646-153587868(-)$1	1	149	174	19.3754
(.(((..............)))..)	chrX:153581840-153582064(-)$1	1	81	106	22.5421
...((..............))...)	chr3:184044211-184044513(+)$1	1	74	99	21.3526
(.(((((............))))).	chr1:19443668-19443902(-)$1	1	65	90	22.1926
(.(((..............)))..)	chrX:153581822-153582024(-)$1	1	41	66	22.5421
.((((((...........).)))))	chr5:140956941-140957175(-)$1	1	108	133	20.6997
(((((..............))))))	chr10:75526064-75526323(+)$1	1	9	34	19.6814
((((.....................	chr2:48030463-48030718(+)$1	1	41	66	17.0313
((((((.............))))))	chr16:58576079-58576334(-)$1	1	208	233	22.0980
(((..(((...........))))))	chr16:9016971-9017291(-)$1	1	204	229	20.7872
((((................)))).	chr6:64421776-64422067(+)$1	1	78	103	19.4989
)..((((..............))))	chr16:24104010-24104311(+)$1	1	142	167	18.9158
(((((((............))))))	chrX:153585786-153586009(-)$1	1	110	135	22.3825
((((....................)	chr2:61715622-61715875(-)$1	1	182	207	17.1528
(.(((..............)))..)	chrX:153581824-153582040(-)$1	1	57	82	22.5421
((((((................)))	chr3:33877442-33877859(+)$1	1	33	58	20.7748
..(((..............)))...	chr3:127323719-127324022(+)$1	1	196	221	19.9810
(..(((.............)))..)	chrX:153582447-153582693(-)$1	1	143	168	23.1181
(((..((.............))..)	chrX:41055499-41055712(+)$1	1	84	109	21.7831
..(((((............))))))	chrX:153587668-153587874(-)$1	1	155	180	19.3754
.((((((............))))))	chr1:19439094-19439349(-)$1	1	11	36	21.1991
((((((.............))))).	chr17:57741133-57741396(+)$1	1	8	33	22.4013
))(((((............))))))	chr17:57737768-57738045(+)$1	1	64	89	20.9501
(.(((..............))).))	chr3:184043002-184043261(+)$1	1	39	64	22.3927
(((((((...........)))))))	chr3:184052546-184052803(+)$1	1	204	229	19.7802
(((..((.............))..)	chrX:41055478-41055699(+)$1	1	105	130	21.7831
((.(((.............))).))	chr3:184052427-184052731(+)$1	1	153	178	22.8964
(((.(((............)))..)	chrX:153581378-153581610(-)$1	1	33	58	22.8534
(((((.(..............).))	chrX:153590685-153590893(-)$1	1	168	193	22.1429
(((((((............))))))	chr2:61720022-61720289(-)$1	1	10	35	22.3825
.((((((............))))))	chr9:114134609-114134882(-)$1	1	186	211	21.7675
(((((((.............)))))	chr5:137902589-137902887(-)$1	1	206	231	22.3751
.(((((.............))))))	chr3:184049446-184049694(+)$1	1	102	127	22.1339
....(((..................	chr5:154172183-154172416(+)$1	1	56	81	16.6213
((((..................)))	chr19:8550385-8550711(+)$1	1	76	101	17.6472
..(((((............)))))(	chrX:153587524-153587787(-)$1	1	68	93	20.2967
....(((..................	chr5:154172216-154172456(+)$1	1	23	48	16.6213
(((((...............)).))	chrX:153581104-153581334(-)$1	1	151	176	18.2353
((((((.............))))))	chrX:153588171-153588372(-)$1	1	43	68	22.0980
((.(((.............))).))	chrX:153579868-153580121(-)$1	1	225	250	22.8964
((.((.(..............).))	chr14:102505284-102505563(+)$1	1	231	256	21.0757
(((((((............))))))	chrX:153585717-153585986(-)$1	1	87	112	22.3825
((((..................)))	chr16:8994315-8994574(-)$1	1	57	82	17.5078
(((((((............))))))	chrX:153585809-153586063(-)$1	1	164	189	22.3825
.(.((((..............))))	chr9:95025191-95025434(-)$1	1	22	47	21.1157
(((((((............))).))	chr6:37142057-37142309(+)$1	1	200	225	22.8514
(((..(((...........))).))	chrX:153581693-153581911(-)$1	1	86	111	20.6610
..((((.............))))((	chr17:29657272-29657612(+)$1	1	77	102	20.0982
..((((..............)))).	chr1:33137951-33138213(+)$1	1	182	207	21.7087
((...((............))...)	chr16:58559799-58560032(-)$1	1	20	45	22.1223
...((((............))))..	chr9:114137326-114137578(-)$1	1	40	65	21.7992
((((..................)))	chr17:57738786-57739067(+)$1	1	127	152	17.2569

#PSSM
f : 0.15	b : 0.13	g : 0.13	d : 0.09	e : 0.09	: : 0.06	= : 0.03	[ : 0.03	! : 0.03	h : 0.03	" : 0.03	# : 0.03	i : 0.03	$ : 0.01	& : 0.01	% : 0.01	c : 0.01	' : 0.01	
f : 0.18	e : 0.16	g : 0.13	[ : 0.09	: : 0.08	d : 0.05	c : 0.03	= : 0.03	h : 0.03	! : 0.03	# : 0.03	i : 0.03	b : 0.01	$ : 0.01	& : 0.01	a : 0.01	" : 0.01	
e : 0.23	f : 0.18	c : 0.13	g : 0.13	[ : 0.06	d : 0.05	= : 0.03	# : 0.03	" : 0.03	b : 0.01	$ : 0.01	h : 0.01	: : 0.01	! : 0.01	i : 0.01	
e : 0.19	c : 0.16	f : 0.15	d : 0.11	g : 0.11	! : 0.06	b : 0.05	= : 0.03	# : 0.03	h : 0.01	[ : 0.01	i : 0.01	" : 0.01	
c : 0.21	e : 0.16	^ : 0.09	d : 0.09	f : 0.09	g : 0.09	! : 0.06	b : 0.05	= : 0.03	x : 0.01	h : 0.01	y : 0.01	" : 0.01	
e : 0.15	c : 0.15	w : 0.13	^ : 0.09	d : 0.09	g : 0.09	f : 0.08	[ : 0.05	b : 0.05	x : 0.03	= : 0.03	y : 0.01	
v : 0.15	w : 0.15	^ : 0.09	c : 0.09	g : 0.09	e : 0.08	b : 0.06	a : 0.06	d : 0.06	y : 0.05	x : 0.03	f : 0.03	
u : 0.26	w : 0.21	v : 0.19	^ : 0.13	t : 0.05	y : 0.05	x : 0.03	c : 0.03	b : 0.01	
u : 0.26	w : 0.21	v : 0.19	^ : 0.13	t : 0.09	y : 0.05	x : 0.03	
u : 0.26	w : 0.21	v : 0.19	^ : 0.13	t : 0.09	y : 0.05	x : 0.03	
u : 0.26	w : 0.21	v : 0.19	^ : 0.13	t : 0.09	y : 0.05	x : 0.03	
u : 0.26	w : 0.21	v : 0.19	^ : 0.13	t : 0.09	y : 0.05	x : 0.03	
u : 0.26	w : 0.21	v : 0.19	^ : 0.13	t : 0.09	y : 0.05	x : 0.03	
u : 0.26	w : 0.21	v : 0.19	^ : 0.13	t : 0.09	y : 0.05	x : 0.03	
u : 0.26	w : 0.21	v : 0.19	^ : 0.13	t : 0.09	y : 0.05	x : 0.03	
u : 0.26	w : 0.21	v : 0.19	^ : 0.13	t : 0.09	y : 0.05	x : 0.03	
u : 0.26	w : 0.21	v : 0.19	^ : 0.13	t : 0.09	y : 0.05	x : 0.03	
u : 0.26	w : 0.21	v : 0.19	^ : 0.13	t : 0.09	y : 0.05	x : 0.03	
u : 0.26	w : 0.21	v : 0.19	^ : 0.13	t : 0.05	y : 0.05	x : 0.03	a : 0.03	g : 0.01	
c : 0.21	^ : 0.13	e : 0.11	f : 0.09	w : 0.08	g : 0.08	b : 0.05	y : 0.05	d : 0.05	v : 0.05	] : 0.03	h : 0.01	x : 0.01	
c : 0.21	e : 0.15	^ : 0.13	b : 0.09	f : 0.09	g : 0.09	d : 0.08	w : 0.06	y : 0.03	h : 0.01	
c : 0.21	e : 0.15	^ : 0.13	d : 0.11	f : 0.09	g : 0.09	b : 0.05	y : 0.03	3 : 0.03	a : 0.03	] : 0.01	h : 0.01	
e : 0.16	] : 0.15	g : 0.13	d : 0.11	2 : 0.11	f : 0.09	^ : 0.08	= : 0.03	3 : 0.03	c : 0.01	h : 0.01	7 : 0.01	i : 0.01	
e : 0.21	f : 0.13	g : 0.13	d : 0.11	2 : 0.11	^ : 0.08	3 : 0.05	= : 0.03	b : 0.03	c : 0.01	] : 0.01	h : 0.01	7 : 0.01	i : 0.01	
f : 0.19	g : 0.13	b : 0.11	d : 0.09	e : 0.09	= : 0.06	] : 0.05	^ : 0.05	c : 0.03	C : 0.03	i : 0.03	h : 0.01	7 : 0.01	4 : 0.01	D : 0.01	3 : 0.01	

#score	1245.6480769578752
#seq	60
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF121XLA_HNRNPA1_UTR_m2_run2.txt

#BEAR
"""ddddtttttttttttdddd333ffff	chr7:26230121-26230402(-)$1	281	207	236	25.3284
GGGddddvvvvvvvvvvvvvddddcccnn	chr3:133478021-133478227(+)$1	206	113	142	26.2593
&ffffffuuuuuuuuuuuuffffffbb]e	chr14:23793866-23794079(+)$1	213	176	205	26.4554
:ffffffvvvvvvvvvvvvvffffff:::	chr3:30734709-30734974(+)$1	265	7	36	25.7251

#otherMatches

#Seq PSSM
CUUACUCUAUACACCAAUGAGUCUUCUUU	chr7:26230121-26230402(-)$1	281	207	236	25.3284
UCAGCAGAGACCACCGAAGACUGCAUCGC	chr3:133478021-133478227(+)$1	206	113	142	26.2593
UCUGUCUCUACAUUUAAAUAGACGGGUUA	chr14:23793866-23794079(+)$1	213	176	205	26.4554
UCAUGGUUACCGUUCUCUCCAUCAUGCCA	chr3:30734709-30734974(+)$1	265	7	36	25.7251

#DB
...((((...........))))...))))	chr7:26230121-26230402(-)$1	1	207	236	25.3284
(((((((.............))))(((..	chr3:133478021-133478227(+)$1	1	113	142	26.2593
.((((((............)))))))).)	chr14:23793866-23794079(+)$1	1	176	205	26.4554
.((((((.............))))))...	chr3:30734709-30734974(+)$1	1	7	36	25.7251

#PSSM
" : 0.25	G : 0.25	& : 0.25	: : 0.25	
f : 0.50	" : 0.25	G : 0.25	
f : 0.50	" : 0.25	G : 0.25	
d : 0.50	f : 0.50	
d : 0.50	f : 0.50	
d : 0.50	f : 0.50	
d : 0.50	f : 0.50	
v : 0.50	t : 0.25	u : 0.25	
v : 0.50	t : 0.25	u : 0.25	
v : 0.50	t : 0.25	u : 0.25	
v : 0.50	t : 0.25	u : 0.25	
v : 0.50	t : 0.25	u : 0.25	
v : 0.50	t : 0.25	u : 0.25	
v : 0.50	t : 0.25	u : 0.25	
v : 0.50	t : 0.25	u : 0.25	
v : 0.50	t : 0.25	u : 0.25	
v : 0.50	t : 0.25	u : 0.25	
v : 0.50	t : 0.25	u : 0.25	
v : 0.50	d : 0.25	u : 0.25	
v : 0.50	d : 0.25	f : 0.25	
d : 0.50	f : 0.50	
d : 0.50	f : 0.50	
f : 0.50	3 : 0.25	d : 0.25	
f : 0.50	3 : 0.25	d : 0.25	
f : 0.50	3 : 0.25	c : 0.25	
f : 0.50	c : 0.25	b : 0.25	
f : 0.25	c : 0.25	b : 0.25	: : 0.25	
f : 0.25	n : 0.25	] : 0.25	: : 0.25	
f : 0.25	n : 0.25	e : 0.25	: : 0.25	

#score	103.76838239657505
#seq	4
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456SOS_UTP18_UTR_m2_run1.txt

#BEAR
Fccc[cccpppppppcccccc:	chr12:104341341-104341592(+)$1	251	8	30	15.3931
d[ccc[bbpppppppbbcccdd	chr11:122929515-122929721(-)$1	206	97	119	17.5466
ddd!!cccpppppppcccdddd	chr3:128211693-128211976(+)$1	283	27	49	17.1033
bb[eeeeepppppppeeeeebb	chr11:122929940-122930185(-)$1	245	0	22	13.9154
eeee[cccpppppppccceeee	chr2:159313512-159313832(+)$1	320	289	311	16.7719
ddd[ddddpppppppdddd]dd	chr1:205718999-205719270(-)$1	271	69	91	15.6156
eeeee[bbpppppppbb]eeee	chr22:22899783-22900056(-)$1	273	148	170	16.7612
d[ccc[bbpppppppbbcccdd	chr11:122929521-122929760(-)$1	239	136	158	17.5466

#otherMatches

#Seq PSSM
GAGCUAGGUUUUUUUUCUGCUA	chr12:104341341-104341592(+)$1	251	8	30	15.3931
uugagcgaCCAUUCUUCCUUAG	chr11:122929515-122929721(-)$1	206	97	119	17.5466
GUGGAAGUGGAAGAAACUCACC	chr3:128211693-128211976(+)$1	283	27	49	17.1033
UGCAGGUAACAAUGGUAUCUCA	chr11:122929940-122930185(-)$1	245	0	22	13.9154
GCGCCAGGGCCAGGACCUgcgc	chr2:159313512-159313832(+)$1	320	289	311	16.7719
CCCAUCGGCUGAAGUUCGGGGG	chr1:205718999-205719270(-)$1	271	69	91	15.6156
cccggcaccaccccugucccgg	chr22:22899783-22900056(-)$1	273	148	170	16.7612
uugagcgaCCAUUCUUCCUUAG	chr11:122929521-122929760(-)$1	239	136	158	17.5466

#DB
((((.(((.......)))))).	chr12:104341341-104341592(+)$1	1	8	30	15.3931
(.(((.((.......)))))))	chr11:122929515-122929721(-)$1	1	97	119	17.5466
(((..(((.......)))))))	chr3:128211693-128211976(+)$1	1	27	49	17.1033
((.(((((.......)))))))	chr11:122929940-122930185(-)$1	1	0	22	13.9154
((((.(((.......)))))))	chr2:159313512-159313832(+)$1	1	289	311	16.7719
(((.((((.......)))).))	chr1:205718999-205719270(-)$1	1	69	91	15.6156
(((((.((.......)).))))	chr22:22899783-22900056(-)$1	1	148	170	16.7612
(.(((.((.......)))))))	chr11:122929521-122929760(-)$1	1	136	158	17.5466

#PSSM
d : 0.50	e : 0.25	F : 0.12	b : 0.12	
[ : 0.25	d : 0.25	e : 0.25	c : 0.12	b : 0.12	
c : 0.37	d : 0.25	e : 0.25	[ : 0.12	
c : 0.37	e : 0.37	! : 0.12	[ : 0.12	
[ : 0.25	c : 0.25	e : 0.25	! : 0.12	d : 0.12	
c : 0.37	[ : 0.37	e : 0.12	d : 0.12	
c : 0.37	b : 0.37	e : 0.12	d : 0.12	
c : 0.37	b : 0.37	e : 0.12	d : 0.12	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
c : 0.37	b : 0.37	e : 0.12	d : 0.12	
c : 0.37	b : 0.37	e : 0.12	d : 0.12	
c : 0.62	e : 0.12	d : 0.12	] : 0.12	
c : 0.37	e : 0.37	d : 0.25	
c : 0.37	e : 0.37	d : 0.12	] : 0.12	
d : 0.50	e : 0.25	c : 0.12	b : 0.12	
d : 0.50	e : 0.25	: : 0.12	b : 0.12	

#score	130.6540606417625
#seq	8
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF322GPD_SF3B1_UTR_m1_run1.txt

#BEAR
::ffffff[eeeeevvvvvvvvvvvvveeeee22ffffff	chr11:62609060-62609293(-)$1	233	156	196	49.1505
::ffffff[eeeeevvvvvvvvvvvvveeeee22ffffff	chr11:62609026-62609260(-)$1	234	123	163	49.1505
::ffffff[eeeeevvvvvvvvvvvvveeeee22ffffff	chr11:62609093-62609309(-)$1	216	172	212	49.1505
::ffffff[eeeeevvvvvvvvvvvvveeeee22ffffff	chr11:62609000-62609214(-)$1	214	77	117	49.1505

#otherMatches

#Seq PSSM
acgcaucgaccugguauugcaguacuuccaggaacggugc	chr11:62609060-62609293(-)$1	233	156	196	49.1505
acgcaucgaccugguauugcaguacuuccaggaacggugc	chr11:62609026-62609260(-)$1	234	123	163	49.1505
acgcaucgaccugguauugcaguacuuccaggaacggugc	chr11:62609093-62609309(-)$1	216	172	212	49.1505
acgcaucgaccugguauugcaguacuuccaggaacggugc	chr11:62609000-62609214(-)$1	214	77	117	49.1505

#DB
..((((((.(((((.............)))))..))))))	chr11:62609060-62609293(-)$1	1	156	196	49.1505
..((((((.(((((.............)))))..))))))	chr11:62609026-62609260(-)$1	1	123	163	49.1505
..((((((.(((((.............)))))..))))))	chr11:62609093-62609309(-)$1	1	172	212	49.1505
..((((((.(((((.............)))))..))))))	chr11:62609000-62609214(-)$1	1	77	117	49.1505

#PSSM
: : 1.00	
: : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
[ : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
v : 1.00	
v : 1.00	
v : 1.00	
v : 1.00	
v : 1.00	
v : 1.00	
v : 1.00	
v : 1.00	
v : 1.00	
v : 1.00	
v : 1.00	
v : 1.00	
v : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
2 : 1.00	
2 : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	

#score	196.60221981719988
#seq	4
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_transcript_m2_run1.txt

#BEAR
cdddd"""cccooooooccc333dddd	chr6:26055927-26056132(-)$1	205	55	82	15.7607
ddd[gggggggooooooggggggg]dd	chr11:65269783-65269999(+)$1	216	112	139	12.5393
ddd[abb[cccooooooccc]bb5555	chr6:27114040-27114250(-)$1	210	7	34	11.0702
HHdddd!!cccooooooccc4444ddd	chr1:149821745-149821998(-)$1	253	10	37	14.1929
bb[ccc[a[cccnnnnnccc]a]ccc]	chr6:26200065-26200292(+)$1	227	29	56	10.3944
e!!dddd[cccooooooccc]ddddee	chr6:26022151-26022377(+)$1	226	169	196	14.4392
""ccc[a!!cccnnnnnccc]a]ccc]	chr6:26158665-26158934(+)$1	269	40	67	11.2121
d:dddd!!cccooooooccc4444ddd	chr1:149857649-149857870(-)$1	221	33	60	14.4178
ccc[ccc[cccmmmmcccccc]ccc33	chr6:26123600-26123855(-)$1	255	21	48	9.9619
ggggggg[cccnnnnnccc22gggggg	chrX:135961252-135961527(-)$1	275	78	105	10.1309
cdddd"""cccooooooccc333dddd	chr6:26055917-26056127(-)$1	210	50	77	15.7607
"ffffff[cccooooooccc22fffff	chr6:27860378-27860621(-)$1	243	196	223	13.4494
fffccc!!ccc[aooooooa]cccccc	chr6:26198977-26199246(-)$1	269	29	56	12.5904
f[a[gggggggooooooggggggg]af	chr6:27115139-27115405(+)$1	266	66	93	12.7681
cdddd"""cccooooooccc333dddd	chr6:26055910-26056117(-)$1	207	40	67	15.7607
###ffffff[aooooooa]ffffffdd	chr6:25726191-25726442(-)$1	251	219	246	11.1263
dddd[ffffffooooooffffffdddd	chr6:26124816-26125063(+)$1	247	152	179	10.9720
ccc[ccc[ccclllccc]ccc]ccc33	chr6:27775158-27775403(-)$1	245	17	44	10.0715
[ccc[bb[cccoooooocccbb]ccc]	chr1:149858807-149859059(+)$1	252	169	196	14.1909
cccddddddddoooooodddd333ddd	chr6:26027025-26027257(-)$1	232	35	62	12.1553
ddgggggggbboooooobb]ggggggg	chr6:32947266-32947522(+)$1	256	82	109	12.2355
bbeeeee!!bboooooobb]eeeee]b	chr6:27100099-27100334(-)$1	235	146	173	11.3516
fffdddd"""aooooooa333dddd::	chr1:228646099-228646358(+)$1	259	152	179	11.3570
!!a[dddd[bboooooobb]dddd]a]	chr6:27101085-27101301(+)$1	216	63	90	12.2492
!!a[dddd[bboooooobb]dddd]a]	chr6:27101136-27101368(+)$1	232	12	39	12.2492
====="""ccc[aooooooa]ccc444	chr6:26216372-26216576(-)$1	204	118	145	13.2664
effffffddddoooooodddd]fffff	chr1:149857633-149857849(-)$1	216	53	80	10.2521
cc]accc[cccooooooccc]ccc:EE	chr11:118965522-118965771(-)$1	249	55	82	12.2496
iiiiiii[ccclllccc333iiiiiii	chr6:26216395-26216649(-)$1	254	140	167	9.7180
f!!dddd[cccooooooccc]ddddff	chr6:26022126-26022351(+)$1	225	194	221	14.4611
g####bb[cccooooooccc]bbgggg	chr6:27107322-27107555(+)$1	233	180	207	14.0526
========a[aooooooa]a]======	chr1:149858918-149859185(-)$1	267	181	208	14.0840
iiiii"""ccc[aooooooa]ccc444	chr6:26216342-26216572(-)$1	230	114	141	13.1773
iiiiiii[bbbboooooobb]bb]iii	chr6:27778110-27778356(+)$1	246	188	215	11.3124
cdddd"""cccooooooccc333dddd	chr6:26055872-26056103(-)$1	231	26	53	15.7607
bbeeeee!!bboooooobb]eeeee]b	chr6:27099994-27100206(-)$1	212	18	45	11.3516
::ccc"""cccooooooccc333cccc	chr6:27834471-27834760(-)$1	289	26	53	14.3703
hhh$$$$$cccooooooccc4444hhh	chr6:26252152-26252401(+)$1	249	201	228	13.3321
gggggg####cccmmmmcccggggggg	chr1:149784741-149784985(-)$1	244	130	157	9.0236
cc:ccc!!cccoooooocccccc:fff	chr6:26157152-26157367(+)$1	215	87	114	12.8020
hhhhhhh[cccooooooccc333hhhh	chr6:26188839-26189089(-)$1	250	180	207	13.6404
bbdddd!!cccooooooccc4444ddd	chr1:149857670-149857939(-)$1	269	102	129	15.0892
ggggggg[a[aooooooa]aggggggg	chr6:26217549-26217763(+)$1	214	49	76	13.5121
ggggggg[cccooooooccc]gggggg	chr6:26104095-26104349(+)$1	254	66	93	15.1576
eeeeccc[cccoooooocccccc::::	chr1:22054283-22054610(-)$1	327	216	243	10.7223
====="""ccc[aooooooa]ccc444	chr6:26216376-26216595(-)$1	219	137	164	13.2664
ccc"""eeeeeooooooeeeee333cc	chr6:27100255-27100499(-)$1	244	131	158	11.6890
eee]ddddcccooooooccc::fffff	chr6:26045961-26046195(+)$1	234	93	120	10.9929
HHdddd!!cccooooooccc4444ddd	chr1:149814934-149815166(+)$1	232	23	50	14.1929
cc"""bb[cccoooooocccbb22ccc	chr6:26197341-26197588(-)$1	247	95	122	13.6294
!!a[dddd[bboooooobb]dddd]a]	chr6:27101102-27101336(+)$1	234	46	73	12.2492

#otherMatches

#Seq PSSM
AAGCCCAAGGCCGCUAAGCCCAAGGUU	chr6:26055927-26056132(-)$1	205	55	82	15.7607
AGUUUUUUUUUAGUGUAGGAGAAAUAC	chr11:65269783-65269999(+)$1	216	112	139	12.5393
UGUCCGAGGGCACCAAGGCCGUCACCA	chr6:27114040-27114250(-)$1	210	7	34	11.0702
GGUCACCAAGUACGCCAGCUCCAAGUG	chr1:149821745-149821998(-)$1	253	10	37	14.1929
GCCCGGGGAGCUGGCUAAGCACGCCGU	chr6:26200065-26200292(+)$1	227	29	56	10.3944
AAUGUGUAAUUAAGAUGAAUGAUACUG	chr6:26022151-26022377(+)$1	226	169	196	14.4392
UCCGGGGGAGCUGGCCAAGCACGCCGU	chr6:26158665-26158934(+)$1	269	40	67	11.2121
GGUCACCAAGUACACCAGCUCCAAGUG	chr1:149857649-149857870(-)$1	221	33	60	14.4178
GCCUGCUGCUUCCCGGAGAGCUGGCCA	chr6:26123600-26123855(-)$1	255	21	48	9.9619
UAUUAUAAUUAAAAUAUAAGCUAUGAU	chrX:135961252-135961527(-)$1	275	78	105	10.1309
AAGCCCAAGGCCGCUAAGCCCAAGGUU	chr6:26055917-26056127(-)$1	210	50	77	15.7607
UGUGGCCGAGUUCAAGCACUGAGGCCA	chr6:27860378-27860621(-)$1	243	196	223	13.4494
GCUGGCCAUCCGCAACGACGAGGAGCU	chr6:26198977-26199246(-)$1	269	29	56	12.5904
AAGUCACCAUCGCGCAGGGUGGUGUCU	chr6:27115139-27115405(+)$1	266	66	93	12.7681
AAGCCCAAGGCCGCUAAGCCCAAGGUU	chr6:26055910-26056117(-)$1	207	40	67	15.7607
CACAAAUGCCCGUUUAAGCGCAUUUCG	chr6:25726191-25726442(-)$1	251	219	246	11.1263
GGCACUAAGGUAAGUUAAUUUUAUGCC	chr6:26124816-26125063(+)$1	247	152	179	10.9720
GCCUGCUGCUUCCGGGGGAGCUGGCCA	chr6:27775158-27775403(-)$1	245	17	44	10.0715
AGCUAAUGCGCUAUUUCGUGAUCAGCC	chr1:149858807-149859059(+)$1	252	169	196	14.1909
GUGGUUUACGCGCUCAAGCGUCAAGGA	chr6:26027025-26027257(-)$1	232	35	62	12.1553
auuuuuaguaauAUUUUUUCAUUAAGG	chr6:32947266-32947522(+)$1	256	82	109	12.2355
GGGUACUAAGGCCGUCACCAAGUACAC	chr6:27100099-27100334(-)$1	235	146	173	11.3516
GCCACCCACACGAUCAAGAAAGGGUUU	chr1:228646099-228646358(+)$1	259	152	179	11.3570
AAGUCACCAUCGCACAGGGCGGUGUCC	chr6:27101085-27101301(+)$1	216	63	90	12.2492
AAGUCACCAUCGCACAGGGCGGUGUCC	chr6:27101136-27101368(+)$1	232	12	39	12.2492
UCUUUUCAGAGCCACUCAAGUCUCACA	chr6:26216372-26216576(-)$1	204	118	145	13.2664
CCUGGCGCUCGCUCGCUCGAGUCGCCG	chr1:149857633-149857849(-)$1	216	53	80	10.2521
CCUCGGGCGGCAAGAAGGCCACCCAGG	chr11:118965522-118965771(-)$1	249	55	82	12.2496
GUAUACAAGCUCCAAGUAAAUGUGUGC	chr6:26216395-26216649(-)$1	254	140	167	9.7180
AAUGUGUAAUUAAGAUGAAUGAUACUG	chr6:26022126-26022351(+)$1	225	194	221	14.4611
GCCAUUGUCAGUGAGUUCUGUCAUCCU	chr6:27107322-27107555(+)$1	233	180	207	14.0526
GGGCUGAUCACGAAAUAGCGCAUUAGC	chr1:149858918-149859185(-)$1	267	181	208	14.0840
UCUUUUCAGAGCCACUCAAGUCUCACA	chr6:26216342-26216572(-)$1	230	114	141	13.1773
UUUUCAGAGCCACCCACAUGCGCGCUG	chr6:27778110-27778356(+)$1	246	188	215	11.3124
AAGCCCAAGGCCGCUAAGCCCAAGGUU	chr6:26055872-26056103(-)$1	231	26	53	15.7607
GGGUACUAAGGCCGUCACCAAGUACAC	chr6:27099994-27100206(-)$1	212	18	45	11.3516
AAGCCCAAGGCAGUUAAGCCGAAGGCG	chr6:27834471-27834760(-)$1	289	26	53	14.3703
GAAGUGUCGCCAAUACAGGUAAAAUUU	chr6:26252152-26252401(+)$1	249	201	228	13.3321
GCCCGCCGCAUCCGCGGGGAGCGGGCC	chr1:149784741-149784985(-)$1	244	130	157	9.0236
GCAGCCAAGCCAAAGAAGGCGGCAGCC	chr6:26157152-26157367(+)$1	215	87	114	12.8020
UGCUAAAAGUGUAGUUUCACGUGUUUA	chr6:26188839-26189089(-)$1	250	180	207	13.6404
GGUCACCAAGUACACCAGCUCCAAGUG	chr1:149857670-149857939(-)$1	269	102	129	15.0892
GAUUACUAGUCAAAUCCGUCAGUGAUC	chr6:26217549-26217763(+)$1	214	49	76	13.5121
CUGCGAUAGGAAUCAUGUCUGGUCGCG	chr6:26104095-26104349(+)$1	254	66	93	15.1576
GGAAGAGAGACAAUUUAGUCCUUACUU	chr1:22054283-22054610(-)$1	327	216	243	10.7223
UCUUUUCAGAGCCACUCAAGUCUCACA	chr6:26216376-26216595(-)$1	219	137	164	13.2664
CAUUUCGUCCAAGGCCAUGGGCAUCAU	chr6:27100255-27100499(-)$1	244	131	158	11.6890
CCCGUUUCUUCCUCAUUGAAAAGGCUC	chr6:26045961-26046195(+)$1	234	93	120	10.9929
GGUCACCAAGUACGCCAGCUCCAAGUG	chr1:149814934-149815166(+)$1	232	23	50	14.1929
GUUUAGAAGUUCGCAAUGGCUCGUACC	chr6:26197341-26197588(-)$1	247	95	122	13.6294
AAGUCACCAUCGCACAGGGCGGUGUCC	chr6:27101102-27101336(+)$1	234	46	73	12.2492

#DB
(((((...(((......)))...))))	chr6:26055927-26056132(-)$1	1	55	82	15.7607
(((.(((((((......))))))).))	chr11:65269783-65269999(+)$1	1	112	139	12.5393
(((.(((.(((......))).))....	chr6:27114040-27114250(-)$1	1	7	34	11.0702
((((((..(((......)))....)))	chr1:149821745-149821998(-)$1	1	10	37	14.1929
((.(((.(.(((.....))).).))).	chr6:26200065-26200292(+)$1	1	29	56	10.3944
(..((((.(((......))).))))))	chr6:26022151-26022377(+)$1	1	169	196	14.4392
..(((.(..(((.....))).).))).	chr6:26158665-26158934(+)$1	1	40	67	11.2121
).((((..(((......)))....)))	chr1:149857649-149857870(-)$1	1	33	60	14.4178
(((.(((.(((....)))))).)))..	chr6:26123600-26123855(-)$1	1	21	48	9.9619
(((((((.(((.....)))..))))))	chrX:135961252-135961527(-)$1	1	78	105	10.1309
(((((...(((......)))...))))	chr6:26055917-26056127(-)$1	1	50	77	15.7607
.((((((.(((......)))..)))))	chr6:27860378-27860621(-)$1	1	196	223	13.4494
((((((..(((.(......).))))))	chr6:26198977-26199246(-)$1	1	29	56	12.5904
(.(.(((((((......))))))).))	chr6:27115139-27115405(+)$1	1	66	93	12.7681
(((((...(((......)))...))))	chr6:26055910-26056117(-)$1	1	40	67	15.7607
...((((((.(......).))))))))	chr6:25726191-25726442(-)$1	1	219	246	11.1263
((((.((((((......))))))))))	chr6:26124816-26125063(+)$1	1	152	179	10.9720
(((.(((.(((...))).))).)))..	chr6:27775158-27775403(-)$1	1	17	44	10.0715
.(((.((.(((......))))).))).	chr1:149858807-149859059(+)$1	1	169	196	14.1909
(((((((((((......))))...)))	chr6:26027025-26027257(-)$1	1	35	62	12.1553
(((((((((((......)).)))))))	chr6:32947266-32947522(+)$1	1	82	109	12.2355
(((((((..((......)).))))).)	chr6:27100099-27100334(-)$1	1	146	173	11.3516
)))((((...(......)...))))..	chr1:228646099-228646358(+)$1	1	152	179	11.3570
..(.((((.((......)).)))).).	chr6:27101085-27101301(+)$1	1	63	90	12.2492
..(.((((.((......)).)))).).	chr6:27101136-27101368(+)$1	1	12	39	12.2492
(((((...(((.(......).)))...	chr6:26216372-26216576(-)$1	1	118	145	13.2664
)((((((((((......)))).)))))	chr1:149857633-149857849(-)$1	1	53	80	10.2521
)).)(((.(((......))).))).))	chr11:118965522-118965771(-)$1	1	55	82	12.2496
(((((((.(((...)))...)))))))	chr6:26216395-26216649(-)$1	1	140	167	9.7180
(..((((.(((......))).))))))	chr6:26022126-26022351(+)$1	1	194	221	14.4611
(....((.(((......))).))))))	chr6:27107322-27107555(+)$1	1	180	207	14.0526
(((((((((.(......).).))))))	chr1:149858918-149859185(-)$1	1	181	208	14.0840
(((((...(((.(......).)))...	chr6:26216342-26216572(-)$1	1	114	141	13.1773
(((((((.((((......)).)).)))	chr6:27778110-27778356(+)$1	1	188	215	11.3124
(((((...(((......)))...))))	chr6:26055872-26056103(-)$1	1	26	53	15.7607
(((((((..((......)).))))).)	chr6:27099994-27100206(-)$1	1	18	45	11.3516
..(((...(((......)))...)))(	chr6:27834471-27834760(-)$1	1	26	53	14.3703
(((.....(((......)))....)))	chr6:26252152-26252401(+)$1	1	201	228	13.3321
((((((....(((....))))))))))	chr1:149784741-149784985(-)$1	1	130	157	9.0236
)).(((..(((......)))))).(((	chr6:26157152-26157367(+)$1	1	87	114	12.8020
(((((((.(((......)))...))))	chr6:26188839-26189089(-)$1	1	180	207	13.6404
))((((..(((......)))....)))	chr1:149857670-149857939(-)$1	1	102	129	15.0892
(((((((.(.(......).))))))))	chr6:26217549-26217763(+)$1	1	49	76	13.5121
(((((((.(((......))).))))))	chr6:26104095-26104349(+)$1	1	66	93	15.1576
))))(((.(((......))))))....	chr1:22054283-22054610(-)$1	1	216	243	10.7223
(((((...(((.(......).)))...	chr6:26216376-26216595(-)$1	1	137	164	13.2664
(((...(((((......)))))...))	chr6:27100255-27100499(-)$1	1	131	158	11.6890
))).))))(((......)))..(((((	chr6:26045961-26046195(+)$1	1	93	120	10.9929
((((((..(((......)))....)))	chr1:149814934-149815166(+)$1	1	23	50	14.1929
((...((.(((......)))))..)))	chr6:26197341-26197588(-)$1	1	95	122	13.6294
..(.((((.((......)).)))).).	chr6:27101102-27101336(+)$1	1	46	73	12.2492

#PSSM
c : 0.21	d : 0.09	g : 0.09	b : 0.07	e : 0.07	f : 0.07	! : 0.05	= : 0.05	i : 0.05	H : 0.03	" : 0.03	h : 0.03	# : 0.01	[ : 0.01	: : 0.01	
d : 0.15	c : 0.15	! : 0.09	b : 0.07	g : 0.07	f : 0.07	= : 0.05	i : 0.05	H : 0.03	: : 0.03	# : 0.03	h : 0.03	e : 0.03	" : 0.01	[ : 0.01	
d : 0.21	c : 0.13	g : 0.09	f : 0.07	a : 0.07	e : 0.07	= : 0.05	i : 0.05	! : 0.03	# : 0.03	h : 0.03	[ : 0.01	] : 0.01	: : 0.01	" : 0.01	
d : 0.25	[ : 0.15	c : 0.11	g : 0.09	f : 0.05	e : 0.05	= : 0.05	i : 0.05	" : 0.03	a : 0.01	# : 0.01	$ : 0.01	h : 0.01	] : 0.01	
d : 0.31	c : 0.17	g : 0.13	f : 0.05	= : 0.05	i : 0.05	[ : 0.03	e : 0.03	" : 0.03	a : 0.01	# : 0.01	$ : 0.01	h : 0.01	
d : 0.23	" : 0.17	g : 0.13	c : 0.13	b : 0.07	f : 0.07	e : 0.03	i : 0.03	[ : 0.01	= : 0.01	$ : 0.01	h : 0.01	
" : 0.15	d : 0.15	g : 0.11	! : 0.11	b : 0.07	c : 0.07	f : 0.07	e : 0.05	i : 0.03	[ : 0.01	a : 0.01	= : 0.01	$ : 0.01	# : 0.01	h : 0.01	
[ : 0.33	" : 0.17	! : 0.17	d : 0.11	g : 0.05	f : 0.03	a : 0.01	= : 0.01	$ : 0.01	# : 0.01	e : 0.01	
c : 0.60	[ : 0.07	g : 0.05	! : 0.05	f : 0.03	d : 0.03	a : 0.03	" : 0.01	b : 0.01	# : 0.01	e : 0.01	
c : 0.64	b : 0.13	[ : 0.05	g : 0.03	d : 0.03	f : 0.01	" : 0.01	# : 0.01	e : 0.01	
c : 0.66	b : 0.13	a : 0.07	g : 0.03	d : 0.03	f : 0.01	e : 0.01	
o : 0.76	[ : 0.07	c : 0.05	l : 0.03	m : 0.01	n : 0.01	b : 0.01	
o : 0.78	a : 0.07	n : 0.05	l : 0.03	m : 0.01	c : 0.01	
o : 0.86	n : 0.05	m : 0.03	l : 0.03	
o : 0.86	n : 0.05	m : 0.03	c : 0.03	
o : 0.86	n : 0.05	c : 0.05	m : 0.01	
o : 0.86	c : 0.07	n : 0.03	m : 0.01	
c : 0.54	b : 0.11	o : 0.09	a : 0.07	g : 0.03	d : 0.03	f : 0.01	] : 0.01	3 : 0.01	e : 0.01	
c : 0.56	b : 0.13	o : 0.07	] : 0.05	g : 0.03	d : 0.03	3 : 0.03	f : 0.01	e : 0.01	
c : 0.54	a : 0.11	] : 0.11	g : 0.03	f : 0.03	d : 0.03	3 : 0.03	2 : 0.01	b : 0.01	e : 0.01	
] : 0.27	3 : 0.13	g : 0.09	4 : 0.09	d : 0.09	c : 0.07	e : 0.05	2 : 0.03	f : 0.03	b : 0.03	i : 0.01	: : 0.01	
3 : 0.13	g : 0.13	c : 0.13	d : 0.11	b : 0.09	4 : 0.09	] : 0.05	e : 0.05	a : 0.03	f : 0.03	2 : 0.01	i : 0.01	= : 0.01	: : 0.01	
c : 0.17	3 : 0.15	g : 0.13	d : 0.11	4 : 0.09	f : 0.09	b : 0.05	] : 0.05	e : 0.03	i : 0.01	= : 0.01	2 : 0.01	
d : 0.21	c : 0.21	g : 0.15	4 : 0.09	f : 0.07	3 : 0.03	e : 0.03	: : 0.03	5 : 0.01	i : 0.01	= : 0.01	] : 0.01	h : 0.01	2 : 0.01	
d : 0.25	c : 0.15	g : 0.11	] : 0.09	f : 0.09	4 : 0.05	e : 0.03	: : 0.03	i : 0.03	h : 0.03	5 : 0.01	= : 0.01	3 : 0.01	
d : 0.23	c : 0.13	g : 0.11	f : 0.09	a : 0.07	4 : 0.05	3 : 0.03	] : 0.03	: : 0.03	i : 0.03	h : 0.03	5 : 0.01	e : 0.01	E : 0.01	= : 0.01	
d : 0.23	] : 0.11	g : 0.11	f : 0.11	c : 0.07	4 : 0.05	3 : 0.03	b : 0.03	: : 0.03	i : 0.03	h : 0.03	5 : 0.01	e : 0.01	E : 0.01	= : 0.01	

#score	645.7648282281045
#seq	51
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_UTR_m2_run2.txt

#BEAR
""ccc!!eeeeerrrrrrrrreeeee22ccc22dddd:dd	chr1:241794975-241795223(-)$1	248	159	199	12.1389
ggggg$$$$$eeeee[bbrrrrrrrrrbb]eeeee333gg	chr4:763959-764201(-)$1	242	32	72	11.7985
eeeee%%%%%%ddddooooooddddeeeee22eeeee]ee	chr21:39469409-39469652(-)$1	243	170	210	11.7732
fffff[bb!!a!!cccnnnnnccc22a22bb22ffffff:	chr3:160134046-160134300(+)$1	254	104	144	11.9138
======!!dddd[ddddllldddd4444dddd22======	chr10:38411908-38412245(+)$1	337	29	69	14.1656
cc[bb!!iiiiiiiiinnnnniiiiiiiii333bb]ccc:	chr15:44063547-44063803(+)$1	256	116	156	11.5652
ggg!!dddd[eeeeeooooooeeeee]dddd]ggggggg:	chr3:160141303-160141538(+)$1	235	172	212	14.5002
gggggg!!dddd[a!!bblllbb22a22dddd22gggggg	chr16:20693536-20693802(+)$1	266	105	145	13.0608
=======bb!!eeeeennnnneeeee22bb22========	chr1:241793396-241793627(-)$1	231	82	122	16.9374
!ffffff"""eeeeeammmma]eeeeeffffff]iiiiii	chr4:761263-761517(-)$1	254	207	247	13.5309
==[bb$$$$$eeeeeooooooeeeee22bb==========	chr11:62283814-62284051(-)$1	237	154	194	19.0353
ffffff####eeeeeooooooeeeee55555ffffff::F	chr4:174253089-174253320(-)$1	231	166	206	11.7258
ggggggg"""ddddqqqqqqqqdddd22ggggggg333cc	chr17:58326668-58326983(-)$1	315	92	132	13.3145

#otherMatches

#Seq PSSM
AGAUGAACUAAACAAACAUAUUUUAGAGCAUGGAUCUCGA	chr1:241794975-241795223(-)$1	248	159	199	12.1389
UUUGCAAGCAGGGUGACAGUUUACAAAUGCCGCCUGAAGC	chr4:763959-764201(-)$1	242	32	72	11.7985
GAGAUAAGCUUUCUCAACAAGGAGAAUCUUGAGAUGUAGU	chr21:39469409-39469652(-)$1	243	170	210	11.7732
AAGUUAUGGAUAGCCUUAAACAGGAAACACAAGGGCUUCA	chr3:160134046-160134300(+)$1	254	104	144	11.9138
aggcuguacaggaagcauggugcuaacaucugaucagcuu	chr10:38411908-38412245(+)$1	337	29	69	14.1656
UGGGGUUGAGUUGGGGGUAUUUUCUAAUUUUUUUUGUACA	chr15:44063547-44063803(+)$1	256	116	156	11.5652
CCCCCACAGCAUUGACUUUAUUUAAUCUUGUUGGGGAGAC	chr3:160141303-160141538(+)$1	235	172	212	14.5002
UCAGAGAGGGGCACUGAGAAGCUAUGGAGUCCACCUCUGA	chr16:20693536-20693802(+)$1	266	105	145	13.0608
auggggaguuuuuuugaaaaccagaauuacaguucucauu	chr1:241793396-241793627(-)$1	231	82	122	16.9374
AAGCCUGAAUGGUGGCCAAGGACCACCUGGGCUCCCAAGG	chr4:761263-761517(-)$1	254	207	247	13.5309
CCUCAUUUUUACUGAACAUUGUUAGUUUUGGGGUAAUGGA	chr11:62283814-62284051(-)$1	237	154	194	19.0353
GUGCAGCUCAAUACUAGCUUCAGUAUAAAAACUGUACAGA	chr4:174253089-174253320(-)$1	231	166	206	11.7258
UGGUGGUAAACAGUGAGGGAAAACUGACAUCACCAGCUUG	chr17:58326668-58326983(-)$1	315	92	132	13.3145

#DB
..(((..(((((.........)))))..)))..)))).((	chr1:241794975-241795223(-)$1	1	159	199	12.1389
(((((.....(((((.((.........)).)))))...))	chr4:763959-764201(-)$1	1	32	72	11.7985
(((((......((((......)))))))))..))))).))	chr21:39469409-39469652(-)$1	1	170	210	11.7732
(((((.((..(..(((.....)))..)..))..)))))).	chr3:160134046-160134300(+)$1	1	104	144	11.9138
((((((..((((.((((...))))....))))..))))))	chr10:38411908-38412245(+)$1	1	29	69	14.1656
((.((..(((((((((.....)))))))))...)).))).	chr15:44063547-44063803(+)$1	1	116	156	11.5652
(((..((((.(((((......))))).)))).))))))).	chr3:160141303-160141538(+)$1	1	172	212	14.5002
((((((..((((.(..((...))..)..))))..))))))	chr16:20693536-20693802(+)$1	1	105	145	13.0608
(((((((((..(((((.....)))))..))..))))))))	chr1:241793396-241793627(-)$1	1	82	122	16.9374
.((((((...((((((....).))))))))))).))))))	chr4:761263-761517(-)$1	1	207	247	13.5309
((.((.....(((((......)))))..))))))))))))	chr11:62283814-62284051(-)$1	1	154	194	19.0353
((((((....(((((......))))).....))))))..)	chr4:174253089-174253320(-)$1	1	166	206	11.7258
(((((((...((((........))))..)))))))...))	chr17:58326668-58326983(-)$1	1	92	132	13.3145

#PSSM
g : 0.30	= : 0.23	f : 0.15	" : 0.07	e : 0.07	c : 0.07	! : 0.07	
g : 0.30	f : 0.23	= : 0.23	" : 0.07	e : 0.07	c : 0.07	
g : 0.30	f : 0.23	= : 0.15	[ : 0.15	c : 0.07	e : 0.07	
g : 0.23	f : 0.23	= : 0.15	b : 0.15	c : 0.07	e : 0.07	! : 0.07	
g : 0.23	f : 0.23	= : 0.15	b : 0.15	c : 0.07	e : 0.07	! : 0.07	
! : 0.15	$ : 0.15	= : 0.15	g : 0.15	f : 0.15	% : 0.07	[ : 0.07	d : 0.07	
! : 0.30	$ : 0.15	% : 0.07	b : 0.07	d : 0.07	= : 0.07	f : 0.07	# : 0.07	g : 0.07	
$ : 0.15	b : 0.15	! : 0.15	" : 0.15	e : 0.07	% : 0.07	i : 0.07	d : 0.07	# : 0.07	
d : 0.23	$ : 0.15	" : 0.15	e : 0.07	% : 0.07	! : 0.07	i : 0.07	b : 0.07	# : 0.07	
$ : 0.15	! : 0.15	d : 0.15	" : 0.15	e : 0.07	% : 0.07	i : 0.07	[ : 0.07	# : 0.07	
e : 0.46	d : 0.23	% : 0.07	a : 0.07	i : 0.07	! : 0.07	
e : 0.53	d : 0.30	! : 0.07	i : 0.07	
e : 0.46	d : 0.15	[ : 0.15	r : 0.07	! : 0.07	i : 0.07	
e : 0.46	d : 0.23	r : 0.07	c : 0.07	i : 0.07	a : 0.07	
e : 0.46	d : 0.15	r : 0.07	c : 0.07	i : 0.07	! : 0.07	q : 0.07	
o : 0.30	r : 0.07	[ : 0.07	c : 0.07	d : 0.07	i : 0.07	! : 0.07	e : 0.07	a : 0.07	q : 0.07	
o : 0.30	n : 0.23	b : 0.15	r : 0.07	d : 0.07	m : 0.07	q : 0.07	
o : 0.30	n : 0.23	b : 0.15	r : 0.07	l : 0.07	m : 0.07	q : 0.07	
o : 0.30	n : 0.23	r : 0.15	l : 0.15	m : 0.07	q : 0.07	
o : 0.30	n : 0.23	r : 0.15	l : 0.15	m : 0.07	q : 0.07	
o : 0.30	n : 0.23	r : 0.15	d : 0.07	l : 0.07	a : 0.07	q : 0.07	
e : 0.38	d : 0.15	r : 0.07	c : 0.07	i : 0.07	b : 0.07	] : 0.07	q : 0.07	
e : 0.46	d : 0.23	r : 0.07	c : 0.07	i : 0.07	b : 0.07	
e : 0.46	d : 0.23	r : 0.07	c : 0.07	i : 0.07	2 : 0.07	
e : 0.46	d : 0.15	2 : 0.15	r : 0.07	4 : 0.07	i : 0.07	
e : 0.53	r : 0.07	2 : 0.07	4 : 0.07	i : 0.07	a : 0.07	d : 0.07	
2 : 0.38	e : 0.15	r : 0.07	a : 0.07	4 : 0.07	i : 0.07	] : 0.07	5 : 0.07	
2 : 0.46	b : 0.07	e : 0.07	4 : 0.07	i : 0.07	d : 0.07	f : 0.07	5 : 0.07	
b : 0.23	d : 0.23	c : 0.07	e : 0.07	2 : 0.07	i : 0.07	f : 0.07	5 : 0.07	g : 0.07	
b : 0.23	d : 0.23	c : 0.07	] : 0.07	e : 0.07	i : 0.07	f : 0.07	5 : 0.07	g : 0.07	
d : 0.23	2 : 0.15	c : 0.07	e : 0.07	b : 0.07	3 : 0.07	f : 0.07	= : 0.07	5 : 0.07	g : 0.07	
2 : 0.30	d : 0.15	f : 0.15	e : 0.07	3 : 0.07	] : 0.07	= : 0.07	g : 0.07	
2 : 0.30	e : 0.15	g : 0.15	= : 0.15	f : 0.15	3 : 0.07	
e : 0.15	f : 0.15	2 : 0.15	g : 0.15	= : 0.15	d : 0.07	b : 0.07	] : 0.07	
= : 0.23	g : 0.23	e : 0.15	f : 0.15	d : 0.07	b : 0.07	i : 0.07	
= : 0.23	3 : 0.15	f : 0.15	g : 0.15	d : 0.07	e : 0.07	] : 0.07	i : 0.07	
= : 0.23	3 : 0.15	f : 0.15	g : 0.15	d : 0.07	e : 0.07	c : 0.07	i : 0.07	
= : 0.23	: : 0.15	3 : 0.15	g : 0.15	] : 0.07	f : 0.07	c : 0.07	i : 0.07	
g : 0.23	= : 0.23	c : 0.15	d : 0.07	e : 0.07	f : 0.07	i : 0.07	: : 0.07	
: : 0.23	= : 0.23	g : 0.15	d : 0.07	e : 0.07	i : 0.07	F : 0.07	c : 0.07	

#score	175.46060373335385
#seq	13
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_UTR_m3_run2.txt

#BEAR
ffffqqqqqqqqfffff	chr7:94298630-94298841(+)$1	211	109	126	12.7488
eeeeqqqqqqqqeeeee	chr1:109473066-109473319(-)$1	253	225	242	13.8786
hhhhqqqqqqqqhhhhh	chr3:184052859-184053098(+)$1	239	215	232	12.5247
!!bbqqqqqqqqbb]dd	chr16:449537-449782(+)$1	245	96	113	12.6542
ddddqqqqqqqqdddd]	chr14:31122635-31122894(+)$1	259	89	106	13.9506
ff[aqqqqqqqqa]fff	chr19:59062861-59063144(-)$1	283	221	238	13.0218
ddddqqqqqqqqdddd2	chr17:20924365-20924612(-)$1	247	185	202	13.7677
ddddqqqqqqqqdddd]	chr3:124685780-124686059(-)$1	279	129	146	13.9506
eeeeqqqqqqqqeeeee	chr17:12011004-12011236(+)$1	232	2	19	13.8786
ffffqqqqqqqqfffff	chr10:102122274-102122489(+)$1	215	52	69	12.7488
ddddqqqqqqqqdddd0	chr3:194999586-194999860(-)$1	274	220	237	13.3608
hhhhqqqqqqqqhhhhh	chr2:97476560-97476840(+)$1	280	127	144	12.5247
ggggqqqqqqqqggggg	chr1:32641554-32641798(+)$1	244	11	28	13.7064
ddddqqqqqqqqdddd:	chr4:124323606-124323850(+)$1	244	186	203	12.8902
"cccqqqqqqqqccc]a	chr17:76850239-76850521(-)$1	282	252	269	13.4989
ddddqqqqqqqqddddd	chr19:7115862-7116123(-)$1	261	141	158	13.6883
eeeeqqqqqqqqeeeee	chr12:112460135-112460406(+)$1	271	83	100	13.8786
eeeeqqqqqqqqeeeee	chr8:22277535-22277792(+)$1	257	1	18	13.8786
e[bbqqqqqqqqbb22e	chr19:8530112-8530436(+)$1	324	279	296	12.3611
eeeeqqqqqqqqeeeee	chr12:56991034-56991323(-)$1	289	200	217	13.8786
ee[aqqqqqqqqaeeee	chr12:54626665-54626957(-)$1	292	145	162	13.8115
ddddqqqqqqqqdddd2	chr8:101721695-101721934(-)$1	239	109	126	13.7677
ffffqqqqqqqqfffff	chr2:220044819-220045028(+)$1	209	17	34	12.7488
hhhhqqqqqqqqhhhhh	chr9:111779215-111779458(-)$1	243	171	188	12.5247
ggggqqqqqqqqggggg	chr8:22278883-22279124(+)$1	241	66	83	13.7064
""bbqqqqqqqqbb333	chr3:186793983-186794236(+)$1	253	195	212	12.4382
f!!aqqqqqqqqa22ff	chr11:62397749-62397954(-)$1	205	50	67	12.7640
!cccqqqqqqqqccc22	chr3:186794079-186794343(+)$1	264	20	37	13.4057
ggggqqqqqqqqggggg	chr11:118279748-118279993(+)$1	245	172	189	13.7064
hhhhqqqqqqqqhhhhh	chr1:52238186-52238495(+)$1	309	233	250	12.5247
eeeeqqqqqqqqeeeee	chr10:116192759-116193024(-)$1	265	157	174	13.8786
ddddqqqqqqqqdddd2	chr7:64451045-64451297(-)$1	252	67	84	13.7677
[a[aqqqqqqqqa]a]h	chr1:55317048-55317261(-)$1	213	81	98	13.2219
##bbqqqqqqqqbb]dd	chr7:37990003-37990262(+)$1	259	20	37	12.2658
[cccqqqqqqqqccc]b	chr1:234740263-234740512(-)$1	249	192	209	13.3960
[cccqqqqqqqqccc]d	chr5:121406103-121406384(-)$1	281	23	40	13.5852
ggggqqqqqqqqggggg	chr17:73886331-73886624(-)$1	293	167	184	13.7064
eeeeqqqqqqqqeeeee	chr12:93894873-93895166(+)$1	293	192	209	13.8786
ddddqqqqqqqqdddde	chr8:99053912-99054145(-)$1	233	164	181	13.8500
ddddqqqqqqqqdddd6	chr8:64124156-64124427(+)$1	271	153	170	13.3387
ddddqqqqqqqqddddE	chr17:421176-421427(-)$1	251	228	245	12.7165
ddddqqqqqqqqdddd]	chr11:61634408-61634640(+)$1	232	147	164	13.9506
ffffqqqqqqqqfffff	chr2:97525773-97526020(-)$1	247	126	143	12.7488
eeeeqqqqqqqqeeeee	chr2:26413928-26414167(-)$1	239	119	136	13.8786
ggggqqqqqqqqggggg	chr4:129191865-129192150(-)$1	285	105	122	13.7064
eeeeqqqqqqqqeeeee	chr16:18803341-18803610(-)$1	269	150	167	13.8786
eeeeqqqqqqqqeeeee	chr5:78075020-78075284(-)$1	264	227	244	13.8786
ffffqqqqqqqqfffff	chr2:220044828-220045060(+)$1	232	8	25	12.7488
ddddqqqqqqqqdddd]	chr15:59189245-59189493(-)$1	248	26	43	13.9506
fcccqqqqqqqqccc22	chr22:32894507-32894751(+)$1	244	186	203	13.2682
d!!aqqqqqqqqa22dd	chr2:112778962-112779198(+)$1	236	117	134	12.9357
hhhhqqqqqqqqhhhhh	chr2:47613608-47613856(+)$1	248	96	113	12.5247
ddddqqqqqqqqdddd]	chr9:140174820-140175100(+)$1	280	8	25	13.9506
ddddqqqqqqqqdddd]	chr11:4159575-4159831(+)$1	256	216	233	13.9506
[cccqqqqqqqqccc]c	chr1:93300235-93300437(+)$1	202	109	126	13.6574
ee[aqqqqqqqqaeeee	chr17:79524774-79525027(-)$1	253	84	101	13.8115
ffffqqqqqqqqfffff	chr20:43128281-43128522(-)$1	241	34	51	12.7488
eeeeqqqqqqqqeeeee	chr22:36661958-36662238(+)$1	280	62	79	13.8786
[cccqqqqqqqqccc]e	chr9:99083014-99083308(-)$1	294	24	41	13.7469
iiiiqqqqqqqqiiiii	chr14:73686140-73686413(+)$1	273	146	163	13.5936
ddddqqqqqqqqdddd2	chr1:153902533-153902807(-)$1	274	232	249	13.7677
iiiiqqqqqqqqiiiii	chr16:23672482-23672703(+)$1	221	195	212	13.5936
ddddqqqqqqqqdddd:	chr3:48509469-48509720(-)$1	251	208	225	12.8902
ddddqqqqqqqqdddd3	chr5:149677921-149678187(-)$1	266	174	191	13.9079
eeeeqqqqqqqqeeeee	chr3:128356677-128356899(-)$1	222	159	176	13.8786
=[bbqqqqqqqqbb===	chr4:74286708-74286917(+)$1	209	95	112	12.7363
ffffqqqqqqqqfffff	chr1:113455848-113456095(-)$1	247	134	151	12.7488
ddddqqqqqqqqdddd:	chr21:46935008-46935249(-)$1	241	223	240	12.8902
!!bbqqqqqqqqbb333	chr9:74324194-74324450(-)$1	256	227	244	12.7450
ggggqqqqqqqqggggg	chr6:8015143-8015469(-)$1	326	177	194	13.7064
ggggqqqqqqqqggggg	chr13:113977290-113977532(+)$1	242	108	125	13.7064
eeeeqqqqqqqqeeeee	chr15:55904024-55904262(-)$1	238	7	24	13.8786

#otherMatches

#Seq PSSM
GAGGAUGAGUGACCUCU	chr7:94298630-94298841(+)$1	211	109	126	12.7488
GAAGUAGAGUUUCUUUU	chr1:109473066-109473319(-)$1	253	225	242	13.8786
UGCUGUUGCCUGGGCAG	chr3:184052859-184053098(+)$1	239	215	232	12.5247
AAGGGUACAAUGUCGUC	chr16:449537-449782(+)$1	245	96	113	12.6542
CAGAAACAUAGAUUUGG	chr14:31122635-31122894(+)$1	259	89	106	13.9506
CCCAUGUGACUUUUGGC	chr19:59062861-59063144(-)$1	283	221	238	13.0218
AGGUUUGGUUCCACCUC	chr17:20924365-20924612(-)$1	247	185	202	13.7677
cugauaggugguucagu	chr3:124685780-124686059(-)$1	279	129	146	13.9506
GCAAGAAUAAGAUUGCU	chr17:12011004-12011236(+)$1	232	2	19	13.8786
UUUGUGUGUAUUCAGAG	chr10:102122274-102122489(+)$1	215	52	69	12.7488
AGAAUAUGUGUUUUCUU	chr3:194999586-194999860(-)$1	274	220	237	13.3608
CCAAGGUCCAUGUUGGU	chr2:97476560-97476840(+)$1	280	127	144	12.5247
gugugguggugggcacc	chr1:32641554-32641798(+)$1	244	11	28	13.7064
GAAUUUUUCCCUGUUUC	chr4:124323606-124323850(+)$1	244	186	203	12.8902
ACCGAAGCUUGGCGGCC	chr17:76850239-76850521(-)$1	282	252	269	13.4989
GGACAUGAGUUGGUCUG	chr19:7115862-7116123(-)$1	261	141	158	13.6883
GGGGCAAGAUAACCUCU	chr12:112460135-112460406(+)$1	271	83	100	13.8786
AAGGUUUUGAAUCCUUU	chr8:22277535-22277792(+)$1	257	1	18	13.8786
UAGCAAAUGUAAGUAAA	chr19:8530112-8530436(+)$1	324	279	296	12.3611
GCUUUGAAUCUUAAGCU	chr12:56991034-56991323(-)$1	289	200	217	13.8786
GGUGCUAGGAUUCCCAC	chr12:54626665-54626957(-)$1	292	145	162	13.8115
GCGCAAAGAAGAGCGCC	chr8:101721695-101721934(-)$1	239	109	126	13.7677
GUGCGGGGUCAGGCGCC	chr2:220044819-220045028(+)$1	209	17	34	12.7488
AUUAGAGGAAAGUAAUU	chr9:111779215-111779458(-)$1	243	171	188	12.5247
GAAGAGGGAAAAUUUCA	chr8:22278883-22279124(+)$1	241	66	83	13.7064
GGUGCUUAUGAUUAAAG	chr3:186793983-186794236(+)$1	253	195	212	12.4382
GGCUGUAUGUUAAAACC	chr11:62397749-62397954(-)$1	205	50	67	12.7640
AGAGAAAAGUUGCUCCC	chr3:186794079-186794343(+)$1	264	20	37	13.4057
GUUUUCUCCAUCAGAUA	chr11:118279748-118279993(+)$1	245	172	189	13.7064
UGUGUGGGUAUGUAUGG	chr1:52238186-52238495(+)$1	309	233	250	12.5247
GGAACAUUUGACUUCCU	chr10:116192759-116193024(-)$1	265	157	174	13.8786
gacucacuccaaagucc	chr7:64451045-64451297(-)$1	252	67	84	13.7677
CUGUGUUCCUGGAGAAG	chr1:55317048-55317261(-)$1	213	81	98	13.2219
UCGGAUGUCAGCCCCCU	chr7:37990003-37990262(+)$1	259	20	37	12.2658
ACAUUUAAAGUUAUGAG	chr1:234740263-234740512(-)$1	249	192	209	13.3960
UUGCAAAUAAUAGCAUA	chr5:121406103-121406384(-)$1	281	23	40	13.5852
GGAGACAGAUUCCUCCC	chr17:73886331-73886624(-)$1	293	167	184	13.7064
GUAUUCAGUAAUAUAUA	chr12:93894873-93895166(+)$1	293	192	209	13.8786
UUUUCCUUUAAUAAAAU	chr8:99053912-99054145(-)$1	233	164	181	13.8500
ACAUGCGAAUaaaugua	chr8:64124156-64124427(+)$1	271	153	170	13.3387
caaaaauaaaaauuugc	chr17:421176-421427(-)$1	251	228	245	12.7165
AAUCAGUUCUUAGAUUC	chr11:61634408-61634640(+)$1	232	147	164	13.9506
GCCCCGAGUGUCGGGCA	chr2:97525773-97526020(-)$1	247	126	143	12.7488
GGUGUCUAGAUUUAUCA	chr2:26413928-26414167(-)$1	239	119	136	13.8786
UGUUUUUAUUUUAACAU	chr4:129191865-129192150(-)$1	285	105	122	13.7064
UUCAUAACUCCUUGGAA	chr16:18803341-18803610(-)$1	269	150	167	13.8786
GCAGUUUGACACCUGCA	chr5:78075020-78075284(-)$1	264	227	244	13.8786
GUGCGGGGUCAGGCGCC	chr2:220044828-220045060(+)$1	232	8	25	12.7488
AGAUACUUAAACAUCUG	chr15:59189245-59189493(-)$1	248	26	43	13.9506
UCCUCUGUGACAAGGUU	chr22:32894507-32894751(+)$1	244	186	203	13.2682
CCGCAUUGCUAAGAUGC	chr2:112778962-112779198(+)$1	236	117	134	12.9357
UUUCAGAUAAAGGAGAU	chr2:47613608-47613856(+)$1	248	96	113	12.5247
CUGGAGAUGACCCCGGA	chr9:140174820-140175100(+)$1	280	8	25	13.9506
UUGGGAUUUUCACCAAA	chr11:4159575-4159831(+)$1	256	216	233	13.9506
GCCCGUAUAGAGGGGGA	chr1:93300235-93300437(+)$1	202	109	126	13.6574
AGAGAACAUUUGCCUGU	chr17:79524774-79525027(-)$1	253	84	101	13.8115
GCACUGUGUUUUGUGCU	chr20:43128281-43128522(-)$1	241	34	51	12.7488
AGAAGCUAAACAUUCUC	chr22:36661958-36662238(+)$1	280	62	79	13.8786
ACUCGGUAGGUGGAGCC	chr9:99083014-99083308(-)$1	294	24	41	13.7469
GCUGUGCCCCAUCAGCA	chr14:73686140-73686413(+)$1	273	146	163	13.5936
CAGUUUGUUCGUGCUGA	chr1:153902533-153902807(-)$1	274	232	249	13.7677
GUUUCUGUGACUAAGCA	chr16:23672482-23672703(+)$1	221	195	212	13.5936
UGCAACAACUCCUGUAC	chr3:48509469-48509720(-)$1	251	208	225	12.8902
GCCCACCCGUCGGGGCU	chr5:149677921-149678187(-)$1	266	174	191	13.9079
UCUCGAAAUGUGGAGAG	chr3:128356677-128356899(-)$1	222	159	176	13.8786
UUCAGCCUACCAUGAGA	chr4:74286708-74286917(+)$1	209	95	112	12.7363
GGCAUAUGUUUCUGCUA	chr1:113455848-113456095(-)$1	247	134	151	12.7488
GCCAUCUCAGGUUGGCG	chr21:46935008-46935249(-)$1	241	223	240	12.8902
AAAUGUGUCUAAGUGGA	chr9:74324194-74324450(-)$1	256	227	244	12.7450
GCAUAUUUUACAGUGCA	chr6:8015143-8015469(-)$1	326	177	194	13.7064
CAGAGAUGAGUGUCUGG	chr13:113977290-113977532(+)$1	242	108	125	13.7064
GACAAAAUUUUAUGUCU	chr15:55904024-55904262(-)$1	238	7	24	13.8786

#DB
((((........)))))	chr7:94298630-94298841(+)$1	1	109	126	12.7488
((((........)))))	chr1:109473066-109473319(-)$1	1	225	242	13.8786
((((........)))))	chr3:184052859-184053098(+)$1	1	215	232	12.5247
..((........)).))	chr16:449537-449782(+)$1	1	96	113	12.6542
((((........)))).	chr14:31122635-31122894(+)$1	1	89	106	13.9506
((.(........).)))	chr19:59062861-59063144(-)$1	1	221	238	13.0218
((((........)))).	chr17:20924365-20924612(-)$1	1	185	202	13.7677
((((........)))).	chr3:124685780-124686059(-)$1	1	129	146	13.9506
((((........)))))	chr17:12011004-12011236(+)$1	1	2	19	13.8786
((((........)))))	chr10:102122274-102122489(+)$1	1	52	69	12.7488
((((........)))).	chr3:194999586-194999860(-)$1	1	220	237	13.3608
((((........)))))	chr2:97476560-97476840(+)$1	1	127	144	12.5247
((((........)))))	chr1:32641554-32641798(+)$1	1	11	28	13.7064
((((........)))).	chr4:124323606-124323850(+)$1	1	186	203	12.8902
.(((........))).)	chr17:76850239-76850521(-)$1	1	252	269	13.4989
((((........))))(	chr19:7115862-7116123(-)$1	1	141	158	13.6883
((((........)))))	chr12:112460135-112460406(+)$1	1	83	100	13.8786
((((........)))))	chr8:22277535-22277792(+)$1	1	1	18	13.8786
(.((........))..)	chr19:8530112-8530436(+)$1	1	279	296	12.3611
((((........)))))	chr12:56991034-56991323(-)$1	1	200	217	13.8786
((.(........)))))	chr12:54626665-54626957(-)$1	1	145	162	13.8115
((((........)))).	chr8:101721695-101721934(-)$1	1	109	126	13.7677
((((........)))))	chr2:220044819-220045028(+)$1	1	17	34	12.7488
((((........)))))	chr9:111779215-111779458(-)$1	1	171	188	12.5247
((((........)))))	chr8:22278883-22279124(+)$1	1	66	83	13.7064
..((........))...	chr3:186793983-186794236(+)$1	1	195	212	12.4382
(..(........)..))	chr11:62397749-62397954(-)$1	1	50	67	12.7640
.(((........)))..	chr3:186794079-186794343(+)$1	1	20	37	13.4057
((((........)))))	chr11:118279748-118279993(+)$1	1	172	189	13.7064
((((........)))))	chr1:52238186-52238495(+)$1	1	233	250	12.5247
((((........)))))	chr10:116192759-116193024(-)$1	1	157	174	13.8786
((((........)))).	chr7:64451045-64451297(-)$1	1	67	84	13.7677
.(.(........).).)	chr1:55317048-55317261(-)$1	1	81	98	13.2219
..((........)).))	chr7:37990003-37990262(+)$1	1	20	37	12.2658
.(((........))).)	chr1:234740263-234740512(-)$1	1	192	209	13.3960
.(((........))).)	chr5:121406103-121406384(-)$1	1	23	40	13.5852
((((........)))))	chr17:73886331-73886624(-)$1	1	167	184	13.7064
((((........)))))	chr12:93894873-93895166(+)$1	1	192	209	13.8786
((((........)))))	chr8:99053912-99054145(-)$1	1	164	181	13.8500
((((........)))).	chr8:64124156-64124427(+)$1	1	153	170	13.3387
((((........)))))	chr17:421176-421427(-)$1	1	228	245	12.7165
((((........)))).	chr11:61634408-61634640(+)$1	1	147	164	13.9506
((((........)))))	chr2:97525773-97526020(-)$1	1	126	143	12.7488
((((........)))))	chr2:26413928-26414167(-)$1	1	119	136	13.8786
((((........)))))	chr4:129191865-129192150(-)$1	1	105	122	13.7064
((((........)))))	chr16:18803341-18803610(-)$1	1	150	167	13.8786
((((........)))))	chr5:78075020-78075284(-)$1	1	227	244	13.8786
((((........)))))	chr2:220044828-220045060(+)$1	1	8	25	12.7488
((((........)))).	chr15:59189245-59189493(-)$1	1	26	43	13.9506
((((........)))..	chr22:32894507-32894751(+)$1	1	186	203	13.2682
(..(........)..))	chr2:112778962-112779198(+)$1	1	117	134	12.9357
((((........)))))	chr2:47613608-47613856(+)$1	1	96	113	12.5247
((((........)))).	chr9:140174820-140175100(+)$1	1	8	25	13.9506
((((........)))).	chr11:4159575-4159831(+)$1	1	216	233	13.9506
.(((........))).)	chr1:93300235-93300437(+)$1	1	109	126	13.6574
((.(........)))))	chr17:79524774-79525027(-)$1	1	84	101	13.8115
((((........)))))	chr20:43128281-43128522(-)$1	1	34	51	12.7488
((((........)))))	chr22:36661958-36662238(+)$1	1	62	79	13.8786
.(((........))).)	chr9:99083014-99083308(-)$1	1	24	41	13.7469
((((........)))))	chr14:73686140-73686413(+)$1	1	146	163	13.5936
((((........)))).	chr1:153902533-153902807(-)$1	1	232	249	13.7677
((((........)))))	chr16:23672482-23672703(+)$1	1	195	212	13.5936
((((........)))).	chr3:48509469-48509720(-)$1	1	208	225	12.8902
((((........)))).	chr5:149677921-149678187(-)$1	1	174	191	13.9079
((((........)))))	chr3:128356677-128356899(-)$1	1	159	176	13.8786
(.((........)))))	chr4:74286708-74286917(+)$1	1	95	112	12.7363
((((........)))))	chr1:113455848-113456095(-)$1	1	134	151	12.7488
((((........)))).	chr21:46935008-46935249(-)$1	1	223	240	12.8902
..((........))...	chr9:74324194-74324450(-)$1	1	227	244	12.7450
((((........)))))	chr6:8015143-8015469(-)$1	1	177	194	13.7064
((((........)))))	chr13:113977290-113977532(+)$1	1	108	125	13.7064
((((........)))))	chr15:55904024-55904262(-)$1	1	7	24	13.8786

#PSSM
d : 0.27	e : 0.22	f : 0.13	g : 0.09	h : 0.06	[ : 0.06	! : 0.04	" : 0.02	i : 0.02	# : 0.01	= : 0.01	
d : 0.26	e : 0.20	f : 0.11	g : 0.09	c : 0.09	h : 0.06	! : 0.05	[ : 0.02	i : 0.02	" : 0.01	a : 0.01	# : 0.01	
d : 0.26	e : 0.18	f : 0.09	g : 0.09	c : 0.09	b : 0.08	h : 0.06	[ : 0.05	! : 0.02	i : 0.02	
d : 0.26	e : 0.18	f : 0.09	g : 0.09	c : 0.09	b : 0.08	a : 0.08	h : 0.06	i : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.26	e : 0.18	f : 0.09	g : 0.09	c : 0.09	b : 0.08	a : 0.08	h : 0.06	i : 0.02	
d : 0.26	e : 0.20	f : 0.09	g : 0.09	c : 0.09	b : 0.08	h : 0.06	] : 0.02	2 : 0.02	i : 0.02	
d : 0.26	e : 0.20	f : 0.11	g : 0.09	c : 0.09	h : 0.06	2 : 0.04	] : 0.02	3 : 0.02	i : 0.02	a : 0.01	= : 0.01	
d : 0.30	e : 0.20	f : 0.12	g : 0.09	] : 0.08	h : 0.06	2 : 0.04	3 : 0.02	i : 0.02	= : 0.01	
e : 0.25	f : 0.12	g : 0.09	h : 0.08	] : 0.08	2 : 0.08	d : 0.06	: : 0.04	3 : 0.04	i : 0.02	0 : 0.01	a : 0.01	b : 0.01	6 : 0.01	E : 0.01	c : 0.01	= : 0.01	

#score	963.0556392514558
#seq	72
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_UTR_m2_run2.txt

#BEAR
eeeeeeeeeeooooooeeeee44	chr19:45324284-45324541(+)$1	257	167	190	11.6050
EEdddd!!bboooooobb22ddd	chr6:31236621-31236862(-)$1	241	14	37	11.8338
""ccc"""bboooooobb22ccc	chr11:10830194-10830445(-)$1	251	125	148	12.6364
!!eeeee[bboooooobb]eeee	chr11:2159971-2160184(-)$1	213	58	81	16.2028
caeeeee[bblllbb]eeeee]a	chr11:2151032-2151236(-)$1	204	96	119	13.2924
eeeee"""bboooooobb4444e	chr14:94843651-94843932(-)$1	281	138	161	13.9349
::eeeee[bboooooobb]eeee	chr11:2159984-2160191(-)$1	207	65	88	15.1193
!bb[dddd[aooooooadddd]b	chr17:27037816-27038138(-)$1	322	159	182	9.0985
!!eeeee[bboooooobb]eeee	chr11:2160057-2160260(-)$1	203	134	157	16.2028
!!eeeee[bboooooobb]eeee	chr11:2159965-2160171(-)$1	206	45	68	16.2028
caeeeee[bblllbb]eeeee]a	chr11:2151053-2151277(-)$1	224	137	160	13.2924
eeee####bboooooobb333ee	chr17:47128057-47128341(+)$1	284	198	221	13.5681
::eeeee[bboooooobb]eeee	chr11:2159956-2160165(-)$1	209	39	62	15.1193
caeeeee[bblllbb]eeeee]a	chr11:2151079-2151286(-)$1	207	146	169	13.2924
fffdddd[bboooooobb]dddd	chr11:62392536-62392798(-)$1	262	174	197	12.7017
eee[eeeeebbnnnnnbb]eeee	chr4:2841559-2841844(+)$1	285	114	137	9.2657
::eeeee[bbnnnnnbb22eeee	chr17:79530618-79530879(-)$1	261	167	190	10.2343
::eeeee[bboooooobb]eeee	chr11:2159938-2160156(-)$1	218	30	53	15.1193
=ccc[cccbboooooobb]ccc]	chr8:30535859-30536137(-)$1	278	172	195	11.8413
::eeeee[bboooooobb]eeee	chr11:2160005-2160211(-)$1	206	85	108	15.1193
caeeeee[bblllbb]eeeee]a	chr11:2151036-2151238(-)$1	202	98	121	13.2924
caeeeee[bblllbb]eeeee]a	chr11:2151086-2151291(-)$1	205	151	174	13.2924
:ccc[eeeeeooooooeeeee]c	chr11:2151380-2151590(-)$1	210	18	41	10.5225
:ccc[eeeeeooooooeeeee]c	chr1:160061115-160061385(-)$1	270	99	122	10.5225
bb[bb"""bboooooobb333bb	chr11:2159827-2160052(-)$1	225	119	142	11.7120
caeeeee[bblllbb]eeeee]a	chr11:2151028-2151232(-)$1	204	92	115	13.2924
eeee####bboooooobb333ee	chr17:47128141-47128388(+)$1	247	114	137	13.5681
gggdddd[bboooooobb]dddd	chr20:251451-251708(-)$1	257	195	218	13.0553
caeeeee[bblllbb]eeeee]a	chr11:2151091-2151299(-)$1	208	159	182	13.2924
::eeeee[bboooooobb]eeee	chr11:2159991-2160198(-)$1	207	72	95	15.1193
caeeeee[bblllbb]eeeee]a	chr11:2151016-2151224(-)$1	208	84	107	13.2924
dd"""eeeeeooooooeeeee33	chr22:36662360-36662679(+)$1	319	25	48	10.2225
::eeeee[bboooooobb]eeee	chr11:2160023-2160231(-)$1	208	105	128	15.1193
caeeeee[bblllbb]eeeee]a	chr11:2151011-2151215(-)$1	204	75	98	13.2924
ffffff"""aooooooa333fff	chr11:64895205-64895481(-)$1	276	227	250	9.9161
caeeeee[bblllbb]eeeee]a	chr11:2151024-2151228(-)$1	204	88	111	13.2924
hhh[bb!!bboooooobb22bb]	chr1:28826073-28826324(+)$1	251	103	126	10.8256
D:eeeee[bboooooobb]eeee	chr11:2160063-2160267(-)$1	204	141	164	15.0423
caeeeee[bblllbb]eeeee]a	chr11:2151001-2151207(-)$1	206	67	90	13.2924
ddd[ccc[bboooooobb22ccc	chr19:19782908-19783153(+)$1	245	126	149	12.4829
:dddd"""bboooooobb333dd	chrX:123046453-123046746(+)$1	293	81	104	12.4306
caeeeee[bblllbb]eeeee]a	chr11:2150972-2151201(-)$1	229	61	84	13.2924
::eeeee[bboooooobb]eeee	chr11:2160067-2160275(-)$1	208	149	172	15.1193
caeeeee[bblllbb]eeeee]a	chr11:2151038-2151253(-)$1	215	113	136	13.2924
==========oooooo=======	chr15:74005904-74006214(+)$1	310	188	211	10.1872
!!eeeee[bboooooobb]eeee	chr11:2160075-2160283(-)$1	208	157	180	16.2028

#otherMatches

#Seq PSSM
GGCCCAGCCUGGGACAAGGCUCC	chr19:45324284-45324541(+)$1	257	167	190	11.6050
AUGUGUCUGCGUUCCUGUUAGCA	chr6:31236621-31236862(-)$1	241	14	37	11.8338
cuucccuaucccCGACGACCGGA	chr11:10830194-10830445(-)$1	251	125	148	12.6364
CCGGGUGCAGCCUCCACUCCGCC	chr11:2159971-2160184(-)$1	213	58	81	16.2028
CCCCGGAGCCCACGGGUCUGGUG	chr11:2151032-2151236(-)$1	204	96	119	13.2924
GCAGCCUGACUUCUUUGUGCCUG	chr14:94843651-94843932(-)$1	281	138	161	13.9349
CCGGGUGCAGCCUCCACUCCGCC	chr11:2159984-2160191(-)$1	207	65	88	15.1193
UGCUCUGGUGCCCACCCCCAGUG	chr17:27037816-27038138(-)$1	322	159	182	9.0985
CCGGGUGCAGCCUCCACUCCGCC	chr11:2160057-2160260(-)$1	203	134	157	16.2028
CCGGGUGCAGCCUCCACUCCGCC	chr11:2159965-2160171(-)$1	206	45	68	16.2028
CCCCGGAGCCCACGGGUCUGGUG	chr11:2151053-2151277(-)$1	224	137	160	13.2924
CAGGUAAUGCACUUUAGCUACCC	chr17:47128057-47128341(+)$1	284	198	221	13.5681
CCGGGUGCAGCCUCCACUCCGCC	chr11:2159956-2160165(-)$1	209	39	62	15.1193
CCCCGGAGCCCACGGGUCUGGUG	chr11:2151079-2151286(-)$1	207	146	169	13.2924
AGAAAGACGUUUCCACACCUCUU	chr11:62392536-62392798(-)$1	262	174	197	12.7017
uggguacaguggcucacaccugu	chr4:2841559-2841844(+)$1	285	114	137	9.2657
accucagccucacaaaguccuga	chr17:79530618-79530879(-)$1	261	167	190	10.2343
CCGGGUGCAGCCUCCACUCCGCC	chr11:2159938-2160156(-)$1	218	30	53	15.1193
aggugaggcugcagugaguccug	chr8:30535859-30536137(-)$1	278	172	195	11.8413
CCGGGUGCAGCCUCCACUCCGCC	chr11:2160005-2160211(-)$1	206	85	108	15.1193
CCCCGGAGCCCACGGGUCUGGUG	chr11:2151036-2151238(-)$1	202	98	121	13.2924
CCCCGGAGCCCACGGGUCUGGUG	chr11:2151086-2151291(-)$1	205	151	174	13.2924
AGGGGAGUGGAGAAGGCCACUGU	chr11:2151380-2151590(-)$1	210	18	41	10.5225
AGAAUGGGAGACGUGCCUCCCCU	chr1:160061115-160061385(-)$1	270	99	122	10.5225
ucacgcccgcccucucgccuucg	chr11:2159827-2160052(-)$1	225	119	142	11.7120
CCCCGGAGCCCACGGGUCUGGUG	chr11:2151028-2151232(-)$1	204	92	115	13.2924
CAGGUAAUGCACUUUAGCUACCC	chr17:47128141-47128388(+)$1	247	114	137	13.5681
UUACAUUUGCUUUUUUGCCAGUG	chr20:251451-251708(-)$1	257	195	218	13.0553
CCCCGGAGCCCACGGGUCUGGUG	chr11:2151091-2151299(-)$1	208	159	182	13.2924
CCGGGUGCAGCCUCCACUCCGCC	chr11:2159991-2160198(-)$1	207	72	95	15.1193
CCCCGGAGCCCACGGGUCUGGUG	chr11:2151016-2151224(-)$1	208	84	107	13.2924
uggccucccaaagugcugggauu	chr22:36662360-36662679(+)$1	319	25	48	10.2225
CCGGGUGCAGCCUCCACUCCGCC	chr11:2160023-2160231(-)$1	208	105	128	15.1193
CCCCGGAGCCCACGGGUCUGGUG	chr11:2151011-2151215(-)$1	204	75	98	13.2924
GGCGGGCAGCACUGAGGGACCCU	chr11:64895205-64895481(-)$1	276	227	250	9.9161
CCCCGGAGCCCACGGGUCUGGUG	chr11:2151024-2151228(-)$1	204	88	111	13.2924
gagguuuugccauauugcccagg	chr1:28826073-28826324(+)$1	251	103	126	10.8256
CCGGGUGCAGCCUCCACUCCGCC	chr11:2160063-2160267(-)$1	204	141	164	15.0423
CCCCGGAGCCCACGGGUCUGGUG	chr11:2151001-2151207(-)$1	206	67	90	13.2924
uugcccaggcuggagugcaaugg	chr19:19782908-19783153(+)$1	245	126	149	12.4829
UGuuuuuuuuuuuuuuaauuuaa	chrX:123046453-123046746(+)$1	293	81	104	12.4306
CCCCGGAGCCCACGGGUCUGGUG	chr11:2150972-2151201(-)$1	229	61	84	13.2924
CCGGGUGCAGCCUCCACUCCGCC	chr11:2160067-2160275(-)$1	208	149	172	15.1193
CCCCGGAGCCCACGGGUCUGGUG	chr11:2151038-2151253(-)$1	215	113	136	13.2924
CCAGGGGUCUGUGAUGGGGCCCC	chr15:74005904-74006214(+)$1	310	188	211	10.1872
CCGGGUGCAGCCUCCACUCCGCC	chr11:2160075-2160283(-)$1	208	157	180	16.2028

#DB
((((((((((......)))))..	chr19:45324284-45324541(+)$1	1	167	190	11.6050
((((((..((......))..)))	chr6:31236621-31236862(-)$1	1	14	37	11.8338
..(((...((......))..)))	chr11:10830194-10830445(-)$1	1	125	148	12.6364
..(((((.((......)).))))	chr11:2159971-2160184(-)$1	1	58	81	16.2028
(((((((.((...)).))))).)	chr11:2151032-2151236(-)$1	1	96	119	13.2924
(((((...((......))....)	chr14:94843651-94843932(-)$1	1	138	161	13.9349
..(((((.((......)).))))	chr11:2159984-2160191(-)$1	1	65	88	15.1193
.((.((((.(......))))).)	chr17:27037816-27038138(-)$1	1	159	182	9.0985
..(((((.((......)).))))	chr11:2160057-2160260(-)$1	1	134	157	16.2028
..(((((.((......)).))))	chr11:2159965-2160171(-)$1	1	45	68	16.2028
(((((((.((...)).))))).)	chr11:2151053-2151277(-)$1	1	137	160	13.2924
((((....((......))...))	chr17:47128057-47128341(+)$1	1	198	221	13.5681
..(((((.((......)).))))	chr11:2159956-2160165(-)$1	1	39	62	15.1193
(((((((.((...)).))))).)	chr11:2151079-2151286(-)$1	1	146	169	13.2924
)))((((.((......)).))))	chr11:62392536-62392798(-)$1	1	174	197	12.7017
(((.(((((((.....)).))))	chr4:2841559-2841844(+)$1	1	114	137	9.2657
..(((((.((.....))..))))	chr17:79530618-79530879(-)$1	1	167	190	10.2343
..(((((.((......)).))))	chr11:2159938-2160156(-)$1	1	30	53	15.1193
)(((.(((((......)).))).	chr8:30535859-30536137(-)$1	1	172	195	11.8413
..(((((.((......)).))))	chr11:2160005-2160211(-)$1	1	85	108	15.1193
(((((((.((...)).))))).)	chr11:2151036-2151238(-)$1	1	98	121	13.2924
(((((((.((...)).))))).)	chr11:2151086-2151291(-)$1	1	151	174	13.2924
.(((.(((((......))))).)	chr11:2151380-2151590(-)$1	1	18	41	10.5225
.(((.(((((......))))).)	chr1:160061115-160061385(-)$1	1	99	122	10.5225
((.((...((......))...))	chr11:2159827-2160052(-)$1	1	119	142	11.7120
(((((((.((...)).))))).)	chr11:2151028-2151232(-)$1	1	92	115	13.2924
((((....((......))...))	chr17:47128141-47128388(+)$1	1	114	137	13.5681
)))((((.((......)).))))	chr20:251451-251708(-)$1	1	195	218	13.0553
(((((((.((...)).))))).)	chr11:2151091-2151299(-)$1	1	159	182	13.2924
..(((((.((......)).))))	chr11:2159991-2160198(-)$1	1	72	95	15.1193
(((((((.((...)).))))).)	chr11:2151016-2151224(-)$1	1	84	107	13.2924
((...(((((......)))))..	chr22:36662360-36662679(+)$1	1	25	48	10.2225
..(((((.((......)).))))	chr11:2160023-2160231(-)$1	1	105	128	15.1193
(((((((.((...)).))))).)	chr11:2151011-2151215(-)$1	1	75	98	13.2924
((((((...(......)...)))	chr11:64895205-64895481(-)$1	1	227	250	9.9161
(((((((.((...)).))))).)	chr11:2151024-2151228(-)$1	1	88	111	13.2924
(((.((..((......))..)).	chr1:28826073-28826324(+)$1	1	103	126	10.8256
).(((((.((......)).))))	chr11:2160063-2160267(-)$1	1	141	164	15.0423
(((((((.((...)).))))).)	chr11:2151001-2151207(-)$1	1	67	90	13.2924
(((.(((.((......))..)))	chr19:19782908-19783153(+)$1	1	126	149	12.4829
.((((...((......))...))	chrX:123046453-123046746(+)$1	1	81	104	12.4306
(((((((.((...)).))))).)	chr11:2150972-2151201(-)$1	1	61	84	13.2924
..(((((.((......)).))))	chr11:2160067-2160275(-)$1	1	149	172	15.1193
(((((((.((...)).))))).)	chr11:2151038-2151253(-)$1	1	113	136	13.2924
((((((((((......)))))))	chr15:74005904-74006214(+)$1	1	188	211	10.1872
..(((((.((......)).))))	chr11:2160075-2160283(-)$1	1	157	180	16.2028

#PSSM
c : 0.28	: : 0.23	e : 0.10	! : 0.10	f : 0.04	= : 0.04	d : 0.04	E : 0.02	" : 0.02	b : 0.02	g : 0.02	h : 0.02	D : 0.02	
a : 0.28	: : 0.19	e : 0.10	! : 0.08	c : 0.06	d : 0.06	b : 0.04	f : 0.04	E : 0.02	" : 0.02	g : 0.02	h : 0.02	= : 0.02	
e : 0.67	c : 0.08	d : 0.06	f : 0.04	b : 0.02	[ : 0.02	g : 0.02	" : 0.02	h : 0.02	= : 0.02	
e : 0.65	d : 0.08	c : 0.08	[ : 0.08	b : 0.02	" : 0.02	f : 0.02	= : 0.02	
e : 0.63	d : 0.10	[ : 0.06	c : 0.04	# : 0.04	b : 0.04	" : 0.02	f : 0.02	= : 0.02	
e : 0.67	d : 0.08	" : 0.08	# : 0.04	c : 0.04	f : 0.02	b : 0.02	= : 0.02	
e : 0.67	" : 0.10	d : 0.06	! : 0.04	# : 0.04	c : 0.04	= : 0.02	
[ : 0.63	e : 0.10	" : 0.10	! : 0.04	# : 0.04	d : 0.02	c : 0.02	= : 0.02	
b : 0.82	e : 0.10	[ : 0.02	" : 0.02	= : 0.02	
b : 0.84	e : 0.08	a : 0.04	= : 0.02	
o : 0.67	l : 0.28	b : 0.02	n : 0.02	
o : 0.67	l : 0.28	n : 0.04	
o : 0.67	l : 0.28	n : 0.04	
o : 0.67	b : 0.28	n : 0.04	
o : 0.67	b : 0.28	n : 0.04	
o : 0.67	] : 0.28	n : 0.02	b : 0.02	
b : 0.56	e : 0.36	a : 0.04	= : 0.02	
b : 0.54	e : 0.36	d : 0.02	2 : 0.02	3 : 0.02	= : 0.02	
e : 0.36	] : 0.34	2 : 0.10	3 : 0.10	4 : 0.02	d : 0.02	= : 0.02	
e : 0.67	3 : 0.10	2 : 0.08	d : 0.06	4 : 0.02	c : 0.02	= : 0.02	
e : 0.67	d : 0.08	3 : 0.08	c : 0.06	4 : 0.02	f : 0.02	b : 0.02	= : 0.02	
e : 0.34	] : 0.34	d : 0.08	c : 0.06	4 : 0.04	b : 0.04	3 : 0.02	f : 0.02	= : 0.02	
e : 0.36	a : 0.28	d : 0.08	c : 0.08	b : 0.04	] : 0.04	4 : 0.02	3 : 0.02	f : 0.02	= : 0.02	

#score	600.6569127237891
#seq	46
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_UTR_m2_run1.txt

#BEAR
:dddd!!gggggggapppppppa]ggggggg4444dddd:	chr19:5692088-5692328(-)$1	240	73	113	10.8522
f[ccc!!bb"""cccrrrrrrrrrcccbb22ccc333fff	chr22:19341504-19341766(-)$1	262	210	250	15.7413
##ccc[iiiiiiiiirrrrrrrrriiiiiiiii]ccc444	chr2:220073261-220073470(+)$1	209	20	60	17.0405
dddd"""eeeeedddd[allla]dddd]eeeee333dddd	chr17:26898248-26898515(-)$1	267	21	61	9.7643
""ccc[cccdddd[bbwwwwwwwwwwwwwwbb]dddd]cc	chr10:70480938-70481147(+)$1	209	6	46	13.4954
cc"""ccc[ffffffqqqqqqqqffffff]ccc333ccce	chr1:224591983-224592246(-)$1	263	152	192	12.4999
))dddd!!gggggggrrrrrrrrrggggggg]dddd>>>>	chr17:61877871-61878169(+)$1	298	133	173	14.5548
==="""ffffff!!attttttttttta]ffffff]=====	chr14:23791033-23791295(+)$1	262	130	170	14.9155
gg"""dddd"""eeeeeqqqqqqqqeeeee333dddd]gg	chr1:109236088-109236345(+)$1	257	208	248	11.6448
eeeee[iiiiiiiiitttttttttttiiiiiiiii]eeee	chr2:17889860-17890150(-)$1	290	46	86	13.4424
b[ccc[eeeee"""bbtttttttttttbb333eeeee]cc	chr17:40861753-40861964(-)$1	211	15	55	12.6384
ddd[eeeee####eeeeerrrrrrrrreeeeeeeeee]dd	chr1:25570464-25570712(-)$1	248	64	104	11.7911
dddd!!ffffffwwwwwwwwwwwwwwffffff22dddddd	chr11:62365353-62365596(-)$1	243	142	182	15.0471
c"""ffffffeeeeerrrrrrrrreeeee]ffffff333c	chr9:100843261-100843538(+)$1	277	152	192	15.3450
eeccc####ffffffrrrrrrrrrffffff7777777ccc	chr5:176861778-176862031(+)$1	253	80	120	12.8192
!bb####ffffffvvvvvvvvvvvvvffffff333bb]hh	chr2:219144724-219144967(-)$1	243	39	79	14.4979
##ccc[===========ppppppp===========]ccc4	chr17:42152354-42152573(+)$1	219	141	181	13.5011
eeeee####gggggggqqqqqqqqgggggggeeeee22ee	chr19:40953825-40954082(-)$1	257	177	217	11.9369
:dddd!!iiiiiiiiipppppppiiiiiiiii333dddd:	chr13:27830180-27830452(+)$1	272	156	196	11.2413
iiiiiiii$$$$$cccpppppppccc22iiiiiiiii22b	chr17:74731861-74732077(-)$1	216	148	188	11.0724
::ggggggg!!bb[cccrrrrrrrrrcccbb22ggggggg	chr6:34204703-34204920(+)$1	217	175	215	11.6395
!!ccc[eeeeeddddapppppppa]dddd]eeeeeccc77	chr19:41119428-41119690(+)$1	262	18	58	10.9513
ee####eeeee[cccuuuuuuuuuuuuccc]eeeee>>>>	chr11:611514-611755(+)$1	241	170	210	13.4974
'dddda[ccc[ddddrrrrrrrrrddddccc]a]dddd77	chr1:1718613-1718863(-)$1	250	62	102	14.2291
ee!!a"""eeeee[cccpppppppccc]eeeee333a555	chr17:56084157-56084371(-)$1	214	61	101	12.2442
dd[a!!ccc!!ddddrrrrrrrrrddddccc22a]dddd]	chr16:4731675-4731928(+)$1	253	66	106	15.9546
ee!!ggggggg[cccqqqqqqqqcccggggggg22eeeee	chr12:49317829-49318108(-)$1	279	111	151	12.8116
$$ccc[eeeee"""bboooooobb333eeeee]ccceeee	chr1:22176557-22176808(-)$1	251	187	227	9.7941
gggg"""==========ppppppp==========>>>>>>	chr2:176000961-176001242(-)$1	281	90	130	13.2881
[a[ccc!!eeeee!!aooooooa22eeeee22ccc]a]ac	chr11:71159157-71159436(-)$1	279	220	260	11.1135
gggg!!ggggggg[aqqqqqqqqa]ggggggg]ggggggg	chr12:112578923-112579173(+)$1	250	81	121	13.2359
####dddd[ffffffrrrrrrrrrffffffdddd4444cc	chr16:85839382-85839617(+)$1	235	150	190	14.9481
======ffffffcccrrrrrrrrrccc4444ffffff:GG	chr12:50135294-50135544(+)$1	250	182	222	14.1290
:dddd####ffffffrrrrrrrrrffffffdddd:::ccc	chr7:156626292-156626542(-)$1	250	145	185	11.6731
dddd"""dddd[cccqqqqqqqqcccdddd22dddd22dd	chr22:22899160-22899394(-)$1	234	17	57	12.0203
gggggccccccvvvvvvvvvvvvvccc]ccc]gggggggd	chr6:43480949-43481193(-)$1	244	42	82	13.9222
[ccc[bb"""eeeeerrrrrrrrreeeee22bb]ccc]cc	chr11:67119347-67119647(-)$1	300	203	243	14.6551
ffffbb[ccc"""bbrrrrrrrrrbb333ccc]bb333ff	chr11:62650370-62650574(+)$1	204	139	179	14.5548
iiiiii####ccccccqqqqqqqqccc]ccc4444iiiii	chr3:52441821-52442076(-)$1	255	52	92	14.2748
[dddd[eeeee[cccrrrrrrrrrccc]eeeeedddd]cc	chr19:50383558-50383773(+)$1	215	72	112	16.8215
cc[bb[ffffff[cccqqqqqqqqccc]ffffff]bb]cc	chr17:42401886-42402136(-)$1	250	40	80	12.8622
:==========ddddqqqqqqqqdddd4444=========	chr11:93464172-93464403(-)$1	231	86	126	12.0434
ddd[ffffff####cccpppppppccc333ffffff]ddd	chr11:59575209-59575451(-)$1	242	84	124	11.6147
ffff"""ddddeeeeeqqqqqqqqeeeee4444dddd333	chr17:4578946-4579192(-)$1	246	154	194	12.6039
bb!!ffffff[a[bbrrrrrrrrrbba]ffffff]bb]a]	chr3:48667152-48667413(-)$1	261	54	94	14.6512
eeeeeaeeeeeccc[cccooooooccc]ccc22eeeee]a	chrX:48434032-48434260(+)$1	228	100	140	10.7130
dd!!bb[eeeeeccccccooooooccc]ccc]eeeee]bb	chr22:39916701-39916926(+)$1	225	55	95	11.3837
bb[bb!!ccceeeeerrrrrrrrreeeee]ccc]bbbb22	chr16:24981635-24981928(-)$1	293	38	78	14.3140
===####ccc[ddddrrrrrrrrrddddccc333======	chr17:7476080-7476329(+)$1	249	21	61	17.6207
ffffff[ddddvvvvvvvvvvvvvdddd333ffffff]cc	chr19:10791018-10791261(+)$1	243	93	133	12.3931
eeee####ccc[cccrrrrrrrrrccc22ccc4444eeee	chr20:2446206-2446456(-)$1	250	10	50	17.4347
fff"""cccxxxxxxxxxxxxxxxccc]ffffffeeeee2	chr19:36501640-36501901(-)$1	261	99	139	13.2255
bb"""dddd[ccctttttttttttccc]dddd333bb]cc	chr2:100018962-100019186(-)$1	224	156	196	13.5270
dddffffffdddd!!arrrrrrrrra22dddd4444ffff	chr5:180664990-180665199(-)$1	209	100	140	13.8489
ddd"""eeeee[cccooooooccc]eeeee333ddddbb2	chr17:17965189-17965446(+)$1	257	64	104	11.1118
dddd####ccc!!cccqqqqqqqqccc22ccc4444dddd	chr1:32846760-32846976(-)$1	216	132	172	14.2797

#otherMatches

#Seq PSSM
AGGCCCAGGCAGGGCUGACCCUGACUCUGCCCCCAGGCCA	chr19:5692088-5692328(-)$1	240	73	113	10.8522
UCAGGACCGUUAGCCAUAAUCCAGGGCCGCACCUCCAAGU	chr22:19341504-19341766(-)$1	262	210	250	15.7413
CUCCCUUUGUAGAGUGAGGAUGAAGCUCUGCAGCGGGCCC	chr2:220073261-220073470(+)$1	209	20	60	17.0405
GGCUACACACCUAGGUGCGGUGGGCUUCGGGUGGGGGGCC	chr17:26898248-26898515(-)$1	267	21	61	9.7643
AGGGGGGCGGCGUGGAGGAAGAGGGGGAAGUUGGCGCAUG	chr10:70480938-70481147(+)$1	209	6	46	13.4954
AGCAUAGUCAUAAUGUACAUAUUCAUUAUAACUUUAUUGA	chr1:224591983-224592246(-)$1	263	152	192	12.4999
CUUGUUUCAAGCUGAUGCUUUACUUCAGCUUUAACAUUUA	chr17:61877871-61878169(+)$1	298	133	173	14.5548
CGGGGAUGGGUCAGCGAUCACUACAAGGGGCCCGACUGGC	chr14:23791033-23791295(+)$1	262	130	170	14.9155
AAUGCAUUUCCCUGGUUAAAUGAACGACUAAUUAGAUUUU	chr1:109236088-109236345(+)$1	257	208	248	11.6448
uuauauauauauacacaauuuucauauguauauauuuaua	chr2:17889860-17890150(-)$1	290	46	86	13.4424
CAGUUUGCAGUCAAAGAAUCACUUAUCCUGAAGCUGCCAA	chr17:40861753-40861964(-)$1	211	15	55	12.6384
AAAUGUGCAGGAUGUGCAUUAGCAAAUUGCACUGUACUUU	chr1:25570464-25570712(-)$1	248	64	104	11.7911
auuccaaggggcacuuuaacauuauagucucugugaaugg	chr11:62365353-62365596(-)$1	243	142	182	15.0471
GAUAGGCUGGCCUGAGAGGGAUGGUCAGGACCAGCCCUCC	chr9:100843261-100843538(+)$1	277	152	192	15.3450
UGGCAAACUGAGCAGCAUCUGACCCUGCUCUUCUCUCUGC	chr5:176861778-176862031(+)$1	253	80	120	12.8192
UUGAGAUUGUCAGGGAGGCUUUGGGAUUGACGCCACAUGU	chr2:219144724-219144967(-)$1	243	39	79	14.4979
UUGGCAGUGGGAGGAUCAGUCUAGGAUCUUCCCAUCGCUC	chr17:42152354-42152573(+)$1	219	141	181	13.5011
GGCCCUCAAGGGUCAUCUCCAAACAUGACCUGGGCCAUUU	chr19:40953825-40954082(-)$1	257	177	217	11.9369
AAGAGAAUUAAUGUGCGUAUUGAGCACAUUAAGCACUCUA	chr13:27830180-27830452(+)$1	272	156	196	11.2413
UUGGCCAGUAUUGCAGAUUUUAACUGAUUUGGCUGAUCCU	chr17:74731861-74732077(-)$1	216	148	188	11.0724
UCCCCCCGCCUGGCUGUGACACAUAAAUACCCCGCGGGGG	chr6:34204703-34204920(+)$1	217	175	215	11.6395
GGCUGAUCCUGGCCCCGGAAAGGGUGGGCUUAGGGCAGGA	chr19:41119428-41119690(+)$1	262	18	58	10.9513
GUGAAGGCGUACGUGGACAAGUACAGGCACAUGCGCAGGC	chr11:611514-611755(+)$1	241	170	210	13.4974
CCUGGGAUAGCUUCCUCAAGAUCUGGAACUAACGCCAGUA	chr1:1718613-1718863(-)$1	250	62	102	14.2291
CCCGCGGUGAGGCGGCAUGGGGCUUGCAGCCUUGAGGAAA	chr17:56084157-56084371(-)$1	214	61	101	12.2442
CCAGAAGGGCAGGCCGCAGAGCAAGGCCCCCGACAGGUGA	chr16:4731675-4731928(+)$1	253	66	106	15.9546
CUCGGCAGGGGUGGGCCUGGGUACCCCCUUUGCAUGGGUA	chr12:49317829-49318108(-)$1	279	111	151	12.8116
CCUGGACCUGAACUGCCUCGUUGCUGGUCAGGCCCAUGCC	chr1:22176557-22176808(-)$1	251	187	227	9.7941
UGAAUUCUGCCAGGUAUGUGUGCAAUAUUUGGUAUUUUUA	chr2:176000961-176001242(-)$1	281	90	130	13.2881
GCGCGCAGGUGGGGAGAGGGUCCAGCUCACAGGCGAGGGG	chr11:71159157-71159436(-)$1	279	220	260	11.1135
AGGUUUCAAUUCAGAAUAAUCUGUGUGAGUUGUGCUUGGG	chr12:112578923-112579173(+)$1	250	81	121	13.2359
GGUGGGCUGUCGGGGACCUCCAUACCUUGAGGCUAUGAGA	chr16:85839382-85839617(+)$1	235	150	190	14.9481
GUAGCUUCCUUCUGCGGACAGAUGGCACCCUGAAGGAACG	chr12:50135294-50135544(+)$1	250	182	222	14.1290
AUUCUCAAAAUCCAAUUCUAAUUUUUGGAUAGAAGUAUGG	chr7:156626292-156626542(-)$1	250	145	185	11.6731
AUUAUACAUGUAUUCUUCUUUUUGGAGCAUUUUGAUUAUU	chr22:22899160-22899394(-)$1	234	17	57	12.0203
CUUCACUCUGGUUGCUAUCCUACUCCAUGGGAUGAAGACG	chr6:43480949-43481193(-)$1	244	42	82	13.9222
CCCUUAGCUCUCUUGCUCACCACCCAAGAACCUCAGGACA	chr11:67119347-67119647(-)$1	300	203	243	14.6551
UGGGGCUGGGACAGUCCUUUCACAGCAAGCCCUGUAGACC	chr11:62650370-62650574(+)$1	204	139	179	14.5548
GGACCCACCCUGAGUCGCAUGAAGGACUUCACCAAGGGUU	chr3:52441821-52442076(-)$1	255	52	92	14.2748
ACAGCUCUGCCACUCAGAGCCCACGAGAGGUAGGCUGAGG	chr19:50383558-50383773(+)$1	215	72	112	16.8215
GCACCAGCCUAGAGCCAGGUAGGCGGCACUgggccggggc	chr17:42401886-42402136(-)$1	250	40	80	12.8622
UGGCAAGUAAUGGUUUUUAUCUUAACUAUAAGUUAUUUGC	chr11:93464172-93464403(-)$1	231	86	126	12.0434
AGAUGUAUAGUUUUACUUUAUCCUGGUUGUCUGUGCUUCU	chr11:59575209-59575451(-)$1	242	84	124	11.6147
AGGAAAGUACUGGGGACCUGAGUCUCCCCAAACAGUGUCA	chr17:4578946-4579192(-)$1	246	154	194	12.6039
GCUUGGUGGUUGCGGUCAUCUUCUCCCUGCUGCUCGUGGU	chr3:48667152-48667413(-)$1	261	54	94	14.6512
UGCUCGGGGCAGCGUGGCCACCAAGCCCCGCAGUGCCCAC	chrX:48434032-48434260(+)$1	228	100	140	10.7130
GUGAGUACCGGGGCGGGUCGUCCAGCUGUGCUCCUGGGGC	chr22:39916701-39916926(+)$1	225	55	95	11.3837
UCUGACAGCUCUUGCUCAAAAUAUGCAAGAAGCAUCGACU	chr16:24981635-24981928(-)$1	293	38	78	14.3140
AGUCGGGCGCUCUAUAAGUUGUCGAUAGGCGGGCACUCCG	chr17:7476080-7476329(+)$1	249	21	61	17.6207
GUGCGCAGGUAUAGUCAUCGCCAUUGCCAACGUGCGCCCU	chr19:10791018-10791261(+)$1	243	93	133	12.3931
GCAGAAAGGGAAGAGAAGCGAGUCCUCGGUCUGGUGCUGC	chr20:2446206-2446456(-)$1	250	10	50	17.4347
CAUCAUGGUAACCACACACCCUCGGCCCGUGUCCCCCCAC	chr19:36501640-36501901(-)$1	261	99	139	13.2255
CUAUGCAGAUUUAACCCAUUUCUCUAACUCUGAUAAGCUU	chr2:100018962-100019186(-)$1	224	156	196	13.5270
GGUGAGUGUGGGUUACAAUUGACUGGGUACCUGGCUGCAC	chr5:180664990-180665199(-)$1	209	100	140	13.8489
CAUAGAGGGCUACUACUACCAUAGGAGUUCAGAAUGGUGA	chr17:17965189-17965446(+)$1	257	64	104	11.1118
ACCCAGCAACCUACUGUAAUGAACCAGAUGGUGAGAGGGU	chr1:32846760-32846976(-)$1	216	132	172	14.2797

#DB
.((((..((((((((.......).)))))))....)))).	chr19:5692088-5692328(-)$1	1	73	113	10.8522
(.(((..((...(((.........)))))..)))...)))	chr22:19341504-19341766(-)$1	1	210	250	15.7413
..(((.(((((((((.........))))))))).)))...	chr2:220073261-220073470(+)$1	1	20	60	17.0405
((((...(((((((((.(...).)))).)))))...))))	chr17:26898248-26898515(-)$1	1	21	61	9.7643
..(((.(((((((.((..............)).)))).))	chr10:70480938-70481147(+)$1	1	6	46	13.4954
((...(((.((((((........)))))).)))...))))	chr1:224591983-224592246(-)$1	1	152	192	12.4999
..((((..(((((((.........))))))).))))....	chr17:61877871-61878169(+)$1	1	133	173	14.5548
(((...((((((..(...........).)))))).)))))	chr14:23791033-23791295(+)$1	1	130	170	14.9155
((...((((...(((((........)))))...)))).))	chr1:109236088-109236345(+)$1	1	208	248	11.6448
(((((.(((((((((...........))))))))).))))	chr2:17889860-17890150(-)$1	1	46	86	13.4424
(.(((.(((((...((...........))...))))).))	chr17:40861753-40861964(-)$1	1	15	55	12.6384
(((.(((((....(((((.........)))))))))).))	chr1:25570464-25570712(-)$1	1	64	104	11.7911
((((..((((((..............))))))..))))))	chr11:62365353-62365596(-)$1	1	142	182	15.0471
(...(((((((((((.........))))).))))))...)	chr9:100843261-100843538(+)$1	1	152	192	15.3450
(((((....((((((.........)))))).......)))	chr5:176861778-176862031(+)$1	1	80	120	12.8192
.((....((((((.............))))))...)).))	chr2:219144724-219144967(-)$1	1	39	79	14.4979
..(((.(((((((((((.......))))))))))).))).	chr17:42152354-42152573(+)$1	1	141	181	13.5011
(((((....(((((((........))))))))))))..))	chr19:40953825-40954082(-)$1	1	177	217	11.9369
.((((..(((((((((.......)))))))))...)))).	chr13:27830180-27830452(+)$1	1	156	196	11.2413
((((((((.....(((.......)))..)))))))))..)	chr17:74731861-74732077(-)$1	1	148	188	11.0724
..(((((((..((.(((.........)))))..)))))))	chr6:34204703-34204920(+)$1	1	175	215	11.6395
..(((.((((((((((.......).)))).))))))))..	chr19:41119428-41119690(+)$1	1	18	58	10.9513
((....(((((.(((............))).)))))....	chr11:611514-611755(+)$1	1	170	210	13.4974
.(((((.(((.((((.........))))))).).))))..	chr1:1718613-1718863(-)$1	1	62	102	14.2291
((..(...(((((.(((.......))).)))))...)...	chr17:56084157-56084371(-)$1	1	61	101	12.2442
((.(..(((..((((.........)))))))..).)))).	chr16:4731675-4731928(+)$1	1	66	106	15.9546
((..(((((((.(((........))))))))))..)))))	chr12:49317829-49318108(-)$1	1	111	151	12.8116
..(((.(((((...((......))...))))).)))))))	chr1:22176557-22176808(-)$1	1	187	227	9.7941
((((...((((((((((.......))))))))))......	chr2:176000961-176001242(-)$1	1	90	130	13.2881
.(.(((..(((((..(......)..)))))..))).).))	chr11:71159157-71159436(-)$1	1	220	260	11.1135
((((..(((((((.(........).))))))).)))))))	chr12:112578923-112579173(+)$1	1	81	121	13.2359
....((((.((((((.........))))))))))....))	chr16:85839382-85839617(+)$1	1	150	190	14.9481
))))))(((((((((.........)))....)))))).))	chr12:50135294-50135544(+)$1	1	182	222	14.1290
.((((....((((((.........))))))))))...(((	chr7:156626292-156626542(-)$1	1	145	185	11.6731
((((...((((.(((........)))))))..))))..))	chr22:22899160-22899394(-)$1	1	17	57	12.0203
(((((((((((.............))).))).)))))))(	chr6:43480949-43481193(-)$1	1	42	82	13.9222
.(((.((...(((((.........)))))..)).))).))	chr11:67119347-67119647(-)$1	1	203	243	14.6551
((((((.(((...((.........))...))).))...))	chr11:62650370-62650574(+)$1	1	139	179	14.5548
((((((....((((((........))).)))....)))))	chr3:52441821-52442076(-)$1	1	52	92	14.2748
.((((.(((((.(((.........))).))))))))).))	chr19:50383558-50383773(+)$1	1	72	112	16.8215
((.((.((((((.(((........))).)))))).)).))	chr17:42401886-42402136(-)$1	1	40	80	12.8622
.((((((((((((((........))))....)))))))))	chr11:93464172-93464403(-)$1	1	86	126	12.0434
(((.((((((....(((.......)))...)))))).)))	chr11:59575209-59575451(-)$1	1	84	124	11.6147
((((...(((((((((........)))))....))))...	chr17:4578946-4579192(-)$1	1	154	194	12.6039
((..((((((.(.((.........))).)))))).)).).	chr3:48667152-48667413(-)$1	1	54	94	14.6512
((((((((((((((.(((......))).)))..))))).)	chrX:48434032-48434260(+)$1	1	100	140	10.7130
((..((.(((((((((((......))).))).))))).))	chr22:39916701-39916926(+)$1	1	55	95	11.3837
((.((..((((((((.........))))).))).))))..	chr16:24981635-24981928(-)$1	1	38	78	14.3140
(((....(((.((((.........)))))))...))))))	chr17:7476080-7476329(+)$1	1	21	61	17.6207
((((((.((((.............))))...)))))).))	chr19:10791018-10791261(+)$1	1	93	133	12.3931
((((....(((.(((.........)))..)))....))))	chr20:2446206-2446456(-)$1	1	10	50	17.4347
(((...(((...............))).))))))))))).	chr19:36501640-36501901(-)$1	1	99	139	13.2255
((...((((.(((...........))).))))...)).))	chr2:100018962-100019186(-)$1	1	156	196	13.5270
(((((((((((((..(.........)..))))....))))	chr5:180664990-180665199(-)$1	1	100	140	13.8489
(((...(((((.(((......))).)))))...)))))).	chr17:17965189-17965446(+)$1	1	64	104	11.1118
((((....(((..(((........)))..)))....))))	chr1:32846760-32846976(-)$1	1	132	172	14.2797

#PSSM
d : 0.17	e : 0.14	: : 0.08	f : 0.08	g : 0.07	b : 0.07	# : 0.05	c : 0.05	= : 0.05	[ : 0.05	! : 0.03	i : 0.03	" : 0.01	) : 0.01	' : 0.01	$ : 0.01	
d : 0.26	e : 0.14	= : 0.07	g : 0.07	b : 0.07	f : 0.07	# : 0.05	c : 0.05	[ : 0.03	" : 0.03	i : 0.03	) : 0.01	: : 0.01	! : 0.01	$ : 0.01	a : 0.01	
d : 0.24	c : 0.16	" : 0.07	= : 0.07	e : 0.07	g : 0.07	! : 0.07	[ : 0.07	f : 0.07	i : 0.03	# : 0.03	b : 0.01	
d : 0.17	c : 0.17	" : 0.12	e : 0.07	# : 0.07	g : 0.07	! : 0.07	f : 0.07	[ : 0.03	i : 0.03	= : 0.03	b : 0.03	a : 0.01	
" : 0.17	c : 0.16	d : 0.12	f : 0.08	# : 0.08	e : 0.07	b : 0.07	! : 0.05	g : 0.05	i : 0.03	= : 0.03	a : 0.01	[ : 0.01	
[ : 0.16	" : 0.14	# : 0.14	! : 0.12	f : 0.08	d : 0.07	c : 0.05	b : 0.05	i : 0.03	g : 0.03	a : 0.03	= : 0.03	e : 0.01	
f : 0.14	e : 0.14	# : 0.14	! : 0.10	" : 0.08	c : 0.08	[ : 0.07	i : 0.05	d : 0.05	g : 0.05	= : 0.03	b : 0.01	
e : 0.17	c : 0.16	f : 0.16	d : 0.10	# : 0.10	g : 0.07	i : 0.07	= : 0.05	! : 0.03	" : 0.03	b : 0.01	
e : 0.21	c : 0.17	f : 0.16	g : 0.08	d : 0.08	# : 0.07	i : 0.05	= : 0.05	[ : 0.03	b : 0.01	$ : 0.01	" : 0.01	
f : 0.21	e : 0.19	c : 0.12	g : 0.08	d : 0.08	" : 0.05	i : 0.05	= : 0.05	# : 0.03	! : 0.03	$ : 0.01	x : 0.01	[ : 0.01	
e : 0.24	f : 0.16	g : 0.08	d : 0.08	c : 0.08	" : 0.05	i : 0.05	= : 0.05	[ : 0.05	# : 0.03	! : 0.03	$ : 0.01	x : 0.01	
f : 0.16	e : 0.14	d : 0.12	[ : 0.10	" : 0.08	g : 0.07	i : 0.05	c : 0.05	# : 0.03	= : 0.03	v : 0.03	$ : 0.01	b : 0.01	a : 0.01	x : 0.01	! : 0.01	
c : 0.21	d : 0.14	e : 0.12	f : 0.08	g : 0.07	i : 0.05	" : 0.05	! : 0.03	# : 0.03	= : 0.03	v : 0.03	[ : 0.03	w : 0.01	$ : 0.01	b : 0.01	x : 0.01	
c : 0.24	d : 0.10	e : 0.10	[ : 0.07	f : 0.07	g : 0.05	i : 0.05	! : 0.05	v : 0.05	" : 0.03	= : 0.03	b : 0.03	w : 0.01	# : 0.01	x : 0.01	t : 0.01	
c : 0.28	d : 0.10	e : 0.10	b : 0.08	f : 0.07	a : 0.05	i : 0.05	v : 0.05	g : 0.03	= : 0.03	! : 0.03	w : 0.01	[ : 0.01	x : 0.01	t : 0.01	
r : 0.30	c : 0.16	q : 0.08	b : 0.05	t : 0.05	e : 0.05	v : 0.05	a : 0.05	= : 0.03	p : 0.01	d : 0.01	w : 0.01	g : 0.01	i : 0.01	u : 0.01	x : 0.01	o : 0.01	
r : 0.32	q : 0.17	c : 0.08	p : 0.07	t : 0.07	v : 0.05	o : 0.05	w : 0.03	e : 0.03	= : 0.03	[ : 0.01	u : 0.01	x : 0.01	
r : 0.33	q : 0.19	p : 0.14	t : 0.07	v : 0.05	o : 0.05	w : 0.03	c : 0.03	a : 0.01	e : 0.01	u : 0.01	x : 0.01	
r : 0.35	q : 0.19	p : 0.14	o : 0.08	t : 0.07	v : 0.05	w : 0.03	l : 0.01	u : 0.01	x : 0.01	
r : 0.35	q : 0.19	p : 0.14	o : 0.08	t : 0.07	v : 0.05	w : 0.03	l : 0.01	u : 0.01	x : 0.01	
r : 0.35	q : 0.19	p : 0.14	o : 0.08	t : 0.07	v : 0.05	w : 0.03	l : 0.01	u : 0.01	x : 0.01	
r : 0.35	q : 0.19	p : 0.14	t : 0.07	o : 0.07	v : 0.05	w : 0.03	a : 0.01	u : 0.01	x : 0.01	c : 0.01	
r : 0.35	q : 0.19	p : 0.12	t : 0.07	v : 0.05	a : 0.03	w : 0.03	o : 0.03	] : 0.01	u : 0.01	b : 0.01	x : 0.01	c : 0.01	
r : 0.35	q : 0.10	t : 0.07	p : 0.07	c : 0.07	v : 0.05	d : 0.03	w : 0.03	a : 0.03	o : 0.03	] : 0.01	f : 0.01	i : 0.01	u : 0.01	b : 0.01	2 : 0.01	x : 0.01	
c : 0.30	d : 0.10	f : 0.07	e : 0.07	g : 0.05	t : 0.05	r : 0.05	] : 0.05	i : 0.03	w : 0.03	= : 0.03	b : 0.03	q : 0.01	v : 0.01	u : 0.01	3 : 0.01	2 : 0.01	
c : 0.30	d : 0.12	e : 0.12	g : 0.07	f : 0.07	t : 0.05	i : 0.03	w : 0.03	r : 0.03	= : 0.03	b : 0.03	v : 0.01	u : 0.01	3 : 0.01	a : 0.01	
c : 0.26	d : 0.14	e : 0.12	f : 0.10	g : 0.08	i : 0.05	a : 0.03	= : 0.03	2 : 0.03	3 : 0.03	w : 0.01	t : 0.01	r : 0.01	u : 0.01	
] : 0.21	e : 0.16	f : 0.10	d : 0.10	g : 0.08	2 : 0.07	i : 0.05	b : 0.03	= : 0.03	c : 0.03	4 : 0.03	3 : 0.03	w : 0.01	
e : 0.21	f : 0.17	c : 0.16	g : 0.08	i : 0.07	d : 0.07	3 : 0.05	b : 0.03	= : 0.03	4 : 0.03	2 : 0.03	w : 0.01	
c : 0.19	f : 0.16	e : 0.14	g : 0.08	i : 0.07	] : 0.07	3 : 0.05	4 : 0.05	d : 0.05	2 : 0.03	= : 0.03	w : 0.01	b : 0.01	
c : 0.21	f : 0.14	e : 0.10	g : 0.08	2 : 0.07	i : 0.07	3 : 0.07	d : 0.07	4 : 0.05	b : 0.03	= : 0.03	7 : 0.01	] : 0.01	
f : 0.17	e : 0.14	c : 0.10	2 : 0.08	i : 0.07	] : 0.07	3 : 0.07	d : 0.07	4 : 0.05	= : 0.05	b : 0.03	g : 0.03	7 : 0.01	
e : 0.16	f : 0.14	4 : 0.10	3 : 0.10	c : 0.07	] : 0.07	d : 0.07	2 : 0.07	i : 0.05	= : 0.05	g : 0.03	7 : 0.01	a : 0.01	b : 0.01	
d : 0.16	f : 0.14	3 : 0.12	e : 0.12	4 : 0.08	] : 0.07	c : 0.05	= : 0.05	g : 0.05	i : 0.03	2 : 0.03	7 : 0.01	a : 0.01	b : 0.01	
d : 0.16	e : 0.14	3 : 0.12	4 : 0.10	c : 0.07	] : 0.07	f : 0.07	= : 0.05	g : 0.05	i : 0.03	b : 0.03	7 : 0.01	2 : 0.01	> : 0.01	: : 0.01	
d : 0.21	e : 0.14	3 : 0.08	b : 0.08	c : 0.07	f : 0.07	4 : 0.07	= : 0.05	] : 0.05	g : 0.05	i : 0.03	7 : 0.01	> : 0.01	: : 0.01	
d : 0.21	e : 0.16	c : 0.08	b : 0.08	3 : 0.05	> : 0.05	= : 0.05	g : 0.05	f : 0.05	2 : 0.03	i : 0.03	a : 0.03	7 : 0.01	4 : 0.01	: : 0.01	] : 0.01	
] : 0.23	d : 0.14	e : 0.10	c : 0.08	> : 0.05	= : 0.05	3 : 0.05	2 : 0.05	g : 0.05	f : 0.03	4 : 0.03	b : 0.03	5 : 0.01	: : 0.01	i : 0.01	
c : 0.21	d : 0.16	e : 0.10	g : 0.07	f : 0.05	> : 0.05	= : 0.05	3 : 0.03	2 : 0.03	7 : 0.03	a : 0.03	b : 0.03	4 : 0.01	h : 0.01	5 : 0.01	G : 0.01	i : 0.01	] : 0.01	
c : 0.21	d : 0.12	e : 0.10	f : 0.05	> : 0.05	= : 0.05	g : 0.05	2 : 0.05	: : 0.03	4 : 0.03	b : 0.03	7 : 0.03	] : 0.03	h : 0.01	5 : 0.01	G : 0.01	i : 0.01	3 : 0.01	a : 0.01	

#score	743.229875079948
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_transcript_m2_run2.txt

#BEAR
ffffffooooooffffff22	chr3:37365549-37365808(+)$1	259	116	136	10.8376
dd[cccooooooccc333dd	chr21:45454169-45454457(+)$1	288	192	212	11.9830
ggggggooooooggggggg:	chr22:50035105-50035420(-)$1	315	262	282	11.6902
=======nnnnn========	chr3:160134046-160134300(+)$1	254	150	170	8.9218
d[bb[aooooooa]bb]ddd	chr11:65267928-65268136(+)$1	208	6	26	10.2604
d!!cccooooooccc22ddd	chr7:119431453-119431710(-)$1	257	52	72	11.5748
"eeeeeooooooeeeee444	chr2:152320603-152320891(+)$1	288	224	244	11.6408
ccc[bboooooobb]ccc22	chr22:17536904-17537178(+)$1	274	7	27	11.7468
!!ddddoooooodddd4444	chr19:28267639-28267927(-)$1	288	57	77	11.3832
ggggggooooooggggggg]	chr5:53629435-53629692(+)$1	257	180	200	12.7261
"""cccoooooocccfffff	chr15:40913964-40914222(+)$1	258	182	202	12.0169
==!!bboooooobb333===	chr7:120897176-120897426(+)$1	250	165	185	13.1004
e"""bboooooobb4444ee	chr2:168747998-168748270(-)$1	272	68	88	11.7393
[cccbboooooobb]cccdd	chr1:39799371-39799627(+)$1	256	177	197	11.5546
======oooooo========	chr11:65267429-65267647(+)$1	218	80	100	13.5105
!!ddddoooooodddd22ad	chr2:55253888-55254152(-)$1	264	119	139	10.7997
[bb[bboooooobb]bbddd	chr6:147616947-147617214(+)$1	267	70	90	10.4325
===!!aooooooa]======	chr22:48161526-48161815(+)$1	289	9	29	13.2736
ffffffooooooffffff]b	chr3:6616065-6616324(+)$1	259	195	215	10.6821
cc!!bboooooobb22ccc]	chr2:198694459-198694743(+)$1	284	9	29	11.8830
!!ddddoooooodddd]iii	chr5:29002343-29002589(+)$1	246	91	111	11.4579
eee[bboooooobb]eeeee	chr19:4034264-4034510(+)$1	246	126	146	11.3300
"""cccooooooccc]bb22	chr2:168739414-168739679(-)$1	265	15	35	12.0101
$$$cccooooooccc4444d	chr8:91269569-91269829(+)$1	260	159	179	11.7996
f"""bboooooobb22ffff	chr5:53635617-53635872(+)$1	255	231	251	11.4023
iiiiiiooooooiiiiiiii	chr1:241793396-241793627(-)$1	231	4	24	12.8908
======oooooo========	chr4:129996959-129997215(-)$1	256	29	49	13.5105
c[ddddoooooodddd333c	chr8:91285120-91285393(+)$1	273	199	219	11.3805
ggggbboooooobb22gggg	chr2:168749144-168749401(-)$1	257	10	30	12.1070
ggg[bboooooobbgggggg	chr10:120795370-120795639(-)$1	269	89	109	12.3885
gggggggooooooggggggg	chr3:6616010-6616265(+)$1	255	213	233	11.1107
!eeeeeooooooeeeee22a	chr9:134086120-134086399(+)$1	279	129	149	11.4342
$$$cccoooooocccfffff	chr8:91271703-91271944(+)$1	241	108	128	11.2930
"""cccooooooccc]bb22	chr2:168739561-168739844(-)$1	283	180	200	12.0101
cc!!bboooooobb22cccb	chr3:47161680-47161972(-)$1	292	143	163	11.5212
!eeeeeooooooeeeee22a	chr7:119524337-119524600(-)$1	263	178	198	11.4342
======oooooo========	chr6:118021994-118022265(+)$1	271	180	200	13.5105
g!!cccooooooccc22ggg	chr11:65266531-65266734(+)$1	203	13	33	12.4719
#eeeeeooooooeeeee333	chr11:65267922-65268128(+)$1	206	86	106	11.9906
ccc!!aooooooa22ccc]d	chr8:91266402-91266646(+)$1	244	127	147	11.6431
ggggggoooooogggggggg	chr22:50039965-50040272(-)$1	307	127	147	12.6393
#eeeeeooooooeeeee333	chr11:65267995-65268201(+)$1	206	13	33	11.9906
=======nnnnn========	chr6:132011780-132012054(+)$1	274	221	241	8.9218
ggggggooooooggggggg3	chr7:140530867-140531132(-)$1	265	110	130	12.7976
[eeeeeooooooeeeee]bb	chr2:168739713-168739999(-)$1	286	212	232	10.9879
eee!!aooooooa22eeeee	chr7:120905023-120905301(+)$1	278	236	256	11.2437
ggggggooooooggggggg]	chr7:119429565-119429824(-)$1	259	14	34	12.7261
!eeeeeooooooeeeee]bb	chr7:102549716-102549979(-)$1	263	179	199	11.0142
ggggggooooooggggggg6	chr2:168751595-168751865(-)$1	270	72	92	12.2125
eeee[aooooooa]eeeeed	chr7:120887316-120887589(+)$1	273	215	235	11.2721
gggg[aooooooaggggggg	chr7:120797285-120797598(+)$1	313	145	165	12.7301
eeecccooooooccc4444e	chr7:120898493-120898750(+)$1	257	168	188	11.9209
ccccccooooooccc]ccc]	chr22:48156494-48156816(+)$1	322	145	165	12.0674
iiiiiiooooooiiiiiiii	chr7:120871447-120871709(+)$1	262	58	78	12.8908
gggggggooooooggggggg	chr21:34609326-34609642(+)$1	316	291	311	11.1107
iiiiiiooooooiiiiiiii	chr4:761263-761517(-)$1	254	132	152	12.8908
ffffffooooooffffff22	chr1:167746664-167746921(+)$1	257	155	175	10.8376
gggggggooooooggggggg	chr8:91270311-91270553(+)$1	242	50	70	11.1107

#otherMatches

#Seq PSSM
UCUCUUGAAGGAAAGGGACA	chr3:37365549-37365808(+)$1	259	116	136	10.8376
AGcuccgcuccgggaacucu	chr21:45454169-45454457(+)$1	288	192	212	11.9830
GAGGCUCCAUCUGGCUUUUA	chr22:50035105-50035420(-)$1	315	262	282	11.6902
AAAAGAAGUAAGUUUUUUUU	chr3:160134046-160134300(+)$1	254	150	170	8.9218
UGUUUGAUGAAGCUAGGACU	chr11:65267928-65268136(+)$1	208	6	26	10.2604
ucaucagauaaaugaaaauc	chr7:119431453-119431710(-)$1	257	52	72	11.5748
AAAUCAGUCACAUGAUUAUA	chr2:152320603-152320891(+)$1	288	224	244	11.6408
AGUAGCAAGAGAGUCACUCC	chr22:17536904-17537178(+)$1	274	7	27	11.7468
AGUUUCACUGUAGAAAAAAA	chr19:28267639-28267927(-)$1	288	57	77	11.3832
UGGGUGUACAGUUGCUCAAU	chr5:53629435-53629692(+)$1	257	180	200	12.7261
GAAAGACUGAACUCUUAUCA	chr15:40913964-40914222(+)$1	258	182	202	12.0169
cccugcaagaccguccaggu	chr7:120897176-120897426(+)$1	250	165	185	13.1004
uugaccuuaccuggaacuga	chr2:168747998-168748270(-)$1	272	68	88	11.7393
UGGUGGACGUUGCUGACCAG	chr1:39799371-39799627(+)$1	256	177	197	11.5546
UUUCUGGUGGUGCAGAAGUU	chr11:65267429-65267647(+)$1	218	80	100	13.5105
AAGAUAGUGAUAUGUUGGCU	chr2:55253888-55254152(-)$1	264	119	139	10.7997
cagugcuugagugcucugcu	chr6:147616947-147617214(+)$1	267	70	90	10.4325
UCAGCCUGAAAUGAUGGGUG	chr22:48161526-48161815(+)$1	289	9	29	13.2736
auuuuauuauuuugagauau	chr3:6616065-6616324(+)$1	259	195	215	10.6821
CUCUGGUUGUUUCUUUAGCU	chr2:198694459-198694743(+)$1	284	9	29	11.8830
AAGGAGCAAAUUUUUCAAGG	chr5:29002343-29002589(+)$1	246	91	111	11.4579
GUCCCCaucccaggagacag	chr19:4034264-4034510(+)$1	246	126	146	11.3300
augagcaagcaggcuacuaa	chr2:168739414-168739679(-)$1	265	15	35	12.0101
aagacaaaugaauguaauau	chr8:91269569-91269829(+)$1	260	159	179	11.7996
CCAAAGGAACUACUGUGCAU	chr5:53635617-53635872(+)$1	255	231	251	11.4023
UAAAGAGCUAUAUUUUUAAA	chr1:241793396-241793627(-)$1	231	4	24	12.8908
aaggucauagaagaccuuuc	chr4:129996959-129997215(-)$1	256	29	49	13.5105
AAGGGUAUUUUGGCCCCCAU	chr8:91285120-91285393(+)$1	273	199	219	11.3805
uguacaauuuuaugaauaca	chr2:168749144-168749401(-)$1	257	10	30	12.1070
GUCUCAAGAUAAUGGAUUUA	chr10:120795370-120795639(-)$1	269	89	109	12.3885
gggaaugaauaaccauuuuu	chr3:6616010-6616265(+)$1	255	213	233	11.1107
guccuagaaggguaggagac	chr9:134086120-134086399(+)$1	279	129	149	11.4342
accccacaguauuggucuaa	chr8:91271703-91271944(+)$1	241	108	128	11.2930
augagcaagcaggcuacuaa	chr2:168739561-168739844(-)$1	283	180	200	12.0101
CAGGGAGAGACAUCAGUGCC	chr3:47161680-47161972(-)$1	292	143	163	11.5212
auuagagacaaaucuaagac	chr7:119524337-119524600(-)$1	263	178	198	11.4342
aaaauugaauaagauuuuuu	chr6:118021994-118022265(+)$1	271	180	200	13.5105
CUGCUGAGGGGGCAGGCGGA	chr11:65266531-65266734(+)$1	203	13	33	12.4719
AGCCAGUGCGAUUUGGUGAA	chr11:65267922-65268128(+)$1	206	86	106	11.9906
uucaagagauaccaagaauc	chr8:91266402-91266646(+)$1	244	127	147	11.6431
AGUCCAUGGACCUGGAUUCA	chr22:50039965-50040272(-)$1	307	127	147	12.6393
AGCCAGUGCGAUUUGGUGAA	chr11:65267995-65268201(+)$1	206	13	33	11.9906
UGUUCAUGCUGAGUGGAUGC	chr6:132011780-132012054(+)$1	274	221	241	8.9218
uggggguguuuuuccccacc	chr7:140530867-140531132(-)$1	265	110	130	12.7976
acauuggaaaaucagugaaa	chr2:168739713-168739999(-)$1	286	212	232	10.9879
GCUUACAUAAAGGGAGGCAU	chr7:120905023-120905301(+)$1	278	236	256	11.2437
CAAUAUUGGUAUAUAUUGUA	chr7:119429565-119429824(-)$1	259	14	34	12.7261
ccaggacuugacucuuguau	chr7:102549716-102549979(-)$1	263	179	199	11.0142
gggguuuuaauuagccucaa	chr2:168751595-168751865(-)$1	270	72	92	12.2125
uuggagagaaaacgccaaaa	chr7:120887316-120887589(+)$1	273	215	235	11.2721
UGCAACAAUUACGUGUGGGG	chr7:120797285-120797598(+)$1	313	145	165	12.7301
CUACUGGAGGAACAGACAAU	chr7:120898493-120898750(+)$1	257	168	188	11.9209
ccacuggaugaauggauggg	chr22:48156494-48156816(+)$1	322	145	165	12.0674
aagguuugaaguagccuuug	chr7:120871447-120871709(+)$1	262	58	78	12.8908
cuugagcccaagaguucaag	chr21:34609326-34609642(+)$1	316	291	311	11.1107
CUUUUUAUCUAAAGGAAGCA	chr4:761263-761517(-)$1	254	132	152	12.8908
cgugcuaggaugagcacgag	chr1:167746664-167746921(+)$1	257	155	175	10.8376
agaaucaugcaauugauuuu	chr8:91270311-91270553(+)$1	242	50	70	11.1107

#DB
((((((......))))))..	chr3:37365549-37365808(+)$1	1	116	136	10.8376
((.(((......)))...))	chr21:45454169-45454457(+)$1	1	192	212	11.9830
((((((......))))))).	chr22:50035105-50035420(-)$1	1	262	282	11.6902
(((((((.....))))))))	chr3:160134046-160134300(+)$1	1	150	170	8.9218
(.((.(......).)).)))	chr11:65267928-65268136(+)$1	1	6	26	10.2604
(..(((......)))..)))	chr7:119431453-119431710(-)$1	1	52	72	11.5748
.(((((......)))))...	chr2:152320603-152320891(+)$1	1	224	244	11.6408
(((.((......)).)))..	chr22:17536904-17537178(+)$1	1	7	27	11.7468
..((((......))))....	chr19:28267639-28267927(-)$1	1	57	77	11.3832
((((((......))))))).	chr5:53629435-53629692(+)$1	1	180	200	12.7261
...(((......))))))))	chr15:40913964-40914222(+)$1	1	182	202	12.0169
((..((......))...)))	chr7:120897176-120897426(+)$1	1	165	185	13.1004
(...((......))....))	chr2:168747998-168748270(-)$1	1	68	88	11.7393
.(((((......)).)))))	chr1:39799371-39799627(+)$1	1	177	197	11.5546
((((((......))))))))	chr11:65267429-65267647(+)$1	1	80	100	13.5105
..((((......))))..)(	chr2:55253888-55254152(-)$1	1	119	139	10.7997
.((.((......)).)))))	chr6:147616947-147617214(+)$1	1	70	90	10.4325
(((..(......).))))))	chr22:48161526-48161815(+)$1	1	9	29	13.2736
((((((......)))))).)	chr3:6616065-6616324(+)$1	1	195	215	10.6821
((..((......))..))).	chr2:198694459-198694743(+)$1	1	9	29	11.8830
..((((......)))).)))	chr5:29002343-29002589(+)$1	1	91	111	11.4579
(((.((......)).)))))	chr19:4034264-4034510(+)$1	1	126	146	11.3300
...(((......))).))..	chr2:168739414-168739679(-)$1	1	15	35	12.0101
...(((......)))....)	chr8:91269569-91269829(+)$1	1	159	179	11.7996
(...((......))..))))	chr5:53635617-53635872(+)$1	1	231	251	11.4023
((((((......))))))))	chr1:241793396-241793627(-)$1	1	4	24	12.8908
((((((......))))))))	chr4:129996959-129997215(-)$1	1	29	49	13.5105
(.((((......))))...)	chr8:91285120-91285393(+)$1	1	199	219	11.3805
((((((......))..))))	chr2:168749144-168749401(-)$1	1	10	30	12.1070
(((.((......))))))))	chr10:120795370-120795639(-)$1	1	89	109	12.3885
(((((((......)))))))	chr3:6616010-6616265(+)$1	1	213	233	11.1107
.(((((......)))))..)	chr9:134086120-134086399(+)$1	1	129	149	11.4342
...(((......))))))))	chr8:91271703-91271944(+)$1	1	108	128	11.2930
...(((......))).))..	chr2:168739561-168739844(-)$1	1	180	200	12.0101
((..((......))..))))	chr3:47161680-47161972(-)$1	1	143	163	11.5212
.(((((......)))))..)	chr7:119524337-119524600(-)$1	1	178	198	11.4342
((((((......))))))))	chr6:118021994-118022265(+)$1	1	180	200	13.5105
(..(((......)))..)))	chr11:65266531-65266734(+)$1	1	13	33	12.4719
.(((((......)))))...	chr11:65267922-65268128(+)$1	1	86	106	11.9906
(((..(......)..))).)	chr8:91266402-91266646(+)$1	1	127	147	11.6431
((((((......))))))))	chr22:50039965-50040272(-)$1	1	127	147	12.6393
.(((((......)))))...	chr11:65267995-65268201(+)$1	1	13	33	11.9906
(((((((.....))))))))	chr6:132011780-132012054(+)$1	1	221	241	8.9218
((((((......))))))).	chr7:140530867-140531132(-)$1	1	110	130	12.7976
.(((((......))))).))	chr2:168739713-168739999(-)$1	1	212	232	10.9879
(((..(......)..)))))	chr7:120905023-120905301(+)$1	1	236	256	11.2437
((((((......))))))).	chr7:119429565-119429824(-)$1	1	14	34	12.7261
.(((((......))))).))	chr7:102549716-102549979(-)$1	1	179	199	11.0142
((((((......))))))).	chr2:168751595-168751865(-)$1	1	72	92	12.2125
((((.(......).)))))(	chr7:120887316-120887589(+)$1	1	215	235	11.2721
((((.(......))))))))	chr7:120797285-120797598(+)$1	1	145	165	12.7301
((((((......)))....)	chr7:120898493-120898750(+)$1	1	168	188	11.9209
((((((......))).))).	chr22:48156494-48156816(+)$1	1	145	165	12.0674
((((((......))))))))	chr7:120871447-120871709(+)$1	1	58	78	12.8908
(((((((......)))))))	chr21:34609326-34609642(+)$1	1	291	311	11.1107
((((((......))))))))	chr4:761263-761517(-)$1	1	132	152	12.8908
((((((......))))))..	chr1:167746664-167746921(+)$1	1	155	175	10.8376
(((((((......)))))))	chr8:91270311-91270553(+)$1	1	50	70	11.1107

#PSSM
g : 0.22	= : 0.12	c : 0.10	! : 0.10	e : 0.08	f : 0.06	" : 0.06	d : 0.05	[ : 0.05	i : 0.05	$ : 0.03	# : 0.03	
g : 0.20	e : 0.18	= : 0.12	c : 0.10	! : 0.08	" : 0.08	f : 0.05	i : 0.05	[ : 0.03	$ : 0.03	d : 0.01	b : 0.01	
g : 0.20	e : 0.18	= : 0.10	! : 0.08	" : 0.08	c : 0.06	d : 0.06	f : 0.05	i : 0.05	b : 0.03	$ : 0.03	[ : 0.01	
c : 0.18	g : 0.18	e : 0.13	! : 0.10	= : 0.08	[ : 0.06	d : 0.06	f : 0.05	i : 0.05	" : 0.03	b : 0.01	
b : 0.18	c : 0.17	g : 0.15	e : 0.12	= : 0.08	d : 0.06	f : 0.05	[ : 0.05	! : 0.05	i : 0.05	
b : 0.18	c : 0.17	g : 0.15	e : 0.12	a : 0.10	= : 0.08	d : 0.06	f : 0.05	i : 0.05	
o : 0.91	g : 0.05	= : 0.03	
o : 0.96	n : 0.03	
o : 0.96	n : 0.03	
o : 0.96	n : 0.03	
o : 0.96	n : 0.03	
o : 0.96	n : 0.03	
b : 0.18	c : 0.17	e : 0.12	g : 0.10	a : 0.10	= : 0.08	d : 0.06	f : 0.05	i : 0.05	o : 0.05	
b : 0.18	c : 0.17	g : 0.17	e : 0.12	= : 0.08	d : 0.06	f : 0.05	] : 0.05	i : 0.05	2 : 0.03	
g : 0.18	c : 0.17	e : 0.13	= : 0.10	2 : 0.10	] : 0.06	d : 0.06	f : 0.05	i : 0.05	b : 0.01	3 : 0.01	4 : 0.01	
g : 0.18	e : 0.17	= : 0.10	2 : 0.10	f : 0.08	d : 0.06	c : 0.05	4 : 0.05	] : 0.05	i : 0.05	3 : 0.03	b : 0.03	
g : 0.20	e : 0.17	f : 0.10	= : 0.10	c : 0.10	4 : 0.06	3 : 0.05	2 : 0.05	b : 0.05	i : 0.05	] : 0.03	
g : 0.22	= : 0.12	f : 0.10	c : 0.10	4 : 0.08	3 : 0.06	i : 0.06	d : 0.05	2 : 0.05	e : 0.05	b : 0.03	] : 0.03	
g : 0.22	2 : 0.12	= : 0.12	d : 0.08	4 : 0.06	e : 0.06	i : 0.06	f : 0.05	c : 0.05	3 : 0.05	] : 0.03	b : 0.03	a : 0.01	
d : 0.15	g : 0.13	= : 0.12	2 : 0.08	] : 0.06	e : 0.06	b : 0.06	i : 0.06	f : 0.05	3 : 0.05	4 : 0.03	a : 0.03	: : 0.01	c : 0.01	6 : 0.01	

#score	681.8216939664051
#seq	58
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_UTR_m3_run1.txt

#BEAR
E}CCC}DDDD}CCC:::::	chr8:101733713-101733973(-)$1	260	148	167	10.9885
::::::DDDD}CCC}CCC}	chr17:39845042-39845364(+)$1	322	143	162	9.2001
ZCCCYYDDDD}BB}CCCJJ	chrX:152953540-152953801(+)$1	261	190	209	11.6515
:EEEEEDDDDCCCA}EEEE	chr16:30081493-30081765(+)$1	272	235	254	10.5851
::CCC}EEEEE}BB}FFFF	chr6:37787506-37787819(+)$1	313	267	286	9.9020
FBB}A}DDDD}A}IIIIII	chr11:61734777-61735183(-)$1	406	223	242	10.9546
II}BB}A}EEEEEYYBBYY	chr6:37138029-37138340(+)$1	311	278	297	9.2159
}CCCYYA}BB}CCC}BB::	chrX:152953601-152953886(+)$1	285	260	279	10.3004
DDDZZZDDDDEEEEE}FFF	chr11:2398561-2398877(+)$1	316	289	308	9.7103
CC}CCCDDDD}HHHHHHHH	chr17:80055905-80056199(-)$1	294	256	275	9.2806
}DDDD}DDDD}CCC}A}BB	chr6:37137955-37138229(+)$1	274	251	270	11.7966
BBCCCYYBBEEEEEZZZEE	chr16:2802651-2802946(+)$1	295	273	292	9.2886
b:CCC}DDDD}FFFFFF}C	chr9:100745555-100745887(+)$1	332	155	174	11.2262
E}CCC}DDDD}CCCBB}DD	chr8:101733773-101734042(-)$1	269	217	236	12.9352
CYYCCC}DDDDCCCEEEEE	chr6:34212609-34212864(+)$1	255	236	255	10.4599
EEEEE}DDDDJJJJJJJJJ	chr11:2160295-2160563(-)$1	268	113	132	8.8821
FFFYYEEEEE}CCC~~~~D	chr12:6875608-6875935(+)$1	327	282	301	9.7895
CCC}BBDDDD}BB}EEEEE	chr1:156721254-156721539(-)$1	285	100	119	11.8985
H}CCC}EEEEE}FFFFFF:	chr1:32403543-32403846(-)$1	303	151	170	9.5899
A}CCC}FFFFFFZZZCCCC	chr7:75677322-75677621(+)$1	299	230	249	8.7677
FF~~~~DDDD}EEEEE:::	chr11:2160379-2160642(-)$1	263	229	248	10.2472
FFFFFFDDDD}IIIIIIII	chr1:26798903-26799202(+)$1	299	249	268	8.4427
D}CCC}DDDDCCC}DDDDC	chr11:809924-810140(+)$1	216	157	176	11.7041
CCYYCCC~~~~CCC}FFFF	chr19:1241671-1242017(+)$1	346	132	151	9.4644
::CCC}DDDD}BBYYBBZZ	chr16:58231517-58231871(-)$1	354	267	286	12.0803
FFFFYYDDDDZZZFFFFFF	chr3:141595429-141595715(+)$1	286	137	156	10.1009
D}CCC}DDDDCCC}DDDDC	chr11:809866-810124(+)$1	258	215	234	11.7041
EECCC}DDDD}CCC}BB::	chr16:2802591-2802851(+)$1	260	237	256	12.7563
gCCCYYDDDDZZZDDDD::	chr1:156721115-156721397(-)$1	282	226	245	9.3005
YYCCCDDDDDDDD}DDDD:	chr6:53213554-53213819(-)$1	265	233	252	9.4505
@EEEEEDDDD}FFFFFF}C	chr2:97541639-97542011(-)$1	372	288	307	10.3304
::CCC}DDDD}A}CCCYYC	chr10:17271178-17271433(+)$1	255	234	253	12.1045
BB}BB}DDDDYYBB}BBZZ	chr19:49611208-49611487(+)$1	279	236	255	11.9989
BB}CCCDDDD}CCC@@@@@	chr8:101733876-101734160(-)$1	284	233	252	9.9114

#otherMatches

#Seq PSSM
GCAGCCGUGCCGAGAUGAA	chr8:101733713-101733973(-)$1	260	148	167	10.9885
CCCCCUCGCUUCCCGACGU	chr17:39845042-39845364(+)$1	322	143	162	9.2001
cgccgccgccgccgccgcc	chrX:152953540-152953801(+)$1	261	190	209	11.6515
AGGGGGAGUCGGCCGUCCG	chr16:30081493-30081765(+)$1	272	235	254	10.5851
GUCCCUGCGGCUUCUGGGG	chr6:37787506-37787819(+)$1	313	267	286	9.9020
cccgccgccgcuccagcgc	chr11:61734777-61735183(-)$1	406	223	242	10.9546
GCUCCUCUGGGCACCGUCC	chr6:37138029-37138340(+)$1	311	278	297	9.2159
cgcaccccgccgcccgccc	chrX:152953601-152953886(+)$1	285	260	279	10.3004
GGCUGCGCCGGGGGCCGGG	chr11:2398561-2398877(+)$1	316	289	308	9.7103
cgggguuCCCGGGGUGGCC	chr17:80055905-80056199(-)$1	294	256	275	9.2806
CGccagccgcagccacagc	chr6:37137955-37138229(+)$1	274	251	270	11.7966
CUGCCCAGGCCGCCGAGCU	chr16:2802651-2802946(+)$1	295	273	292	9.2886
GACCGCGCCGCCGGCCUCC	chr9:100745555-100745887(+)$1	332	155	174	11.2262
GCAGCCGUGCCGAGAUGAA	chr8:101733773-101734042(-)$1	269	217	236	12.9352
CUCCCAUGGGCUGAGUGGG	chr6:34212609-34212864(+)$1	255	236	255	10.4599
GGGCGCCGUCCGCGGGGUC	chr11:2160295-2160563(-)$1	268	113	132	8.8821
AGGCAGCGGCCGAGUUGAG	chr12:6875608-6875935(+)$1	327	282	301	9.7895
CCCACCGCGCCGGAGCCUU	chr1:156721254-156721539(-)$1	285	100	119	11.8985
ccgccaccgcuaccgccgc	chr1:32403543-32403846(-)$1	303	151	170	9.5899
GACGAGGGGCGGCCUGCAG	chr7:75677322-75677621(+)$1	299	230	249	8.7677
GGAUUCCCCGCCGCCUCCU	chr11:2160379-2160642(-)$1	263	229	248	10.2472
cacugccgccaccgccgcc	chr1:26798903-26799202(+)$1	299	249	268	8.4427
GAGUCCGUGGGGAUGCGGG	chr11:809924-810140(+)$1	216	157	176	11.7041
aguccgcuguccgccagcu	chr19:1241671-1242017(+)$1	346	132	151	9.4644
UACGCCGAGGUGAACAGUC	chr16:58231517-58231871(-)$1	354	267	286	12.0803
AGCCGGGACGCGCCUCCGC	chr3:141595429-141595715(+)$1	286	137	156	10.1009
GAGUCCGUGGGGAUGCGGG	chr11:809866-810124(+)$1	258	215	234	11.7041
CGGCGGGCGGAGGCGGCGG	chr16:2802591-2802851(+)$1	260	237	256	12.7563
CGCCAAGAUGAAGGGCUAC	chr1:156721115-156721397(-)$1	282	226	245	9.3005
UCGGGGGCCGCCGCUCGGC	chr6:53213554-53213819(-)$1	265	233	252	9.4505
AGCUCUGGUUUCCCUGGGC	chr2:97541639-97542011(-)$1	372	288	307	10.3304
UCCGCAGCCAUGUCCACCA	chr10:17271178-17271433(+)$1	255	234	253	12.1045
gcgacggcggagccaccgg	chr19:49611208-49611487(+)$1	279	236	255	11.9989
CCUCUGCGCUUGCUCCCCG	chr8:101733876-101734160(-)$1	284	233	252	9.9114

#DB
).))).)))).))).....	chr8:101733713-101733973(-)$1	1	148	167	10.9885
......)))).))).))).	chr17:39845042-39845364(+)$1	1	143	162	9.2001
.)))..)))).)).)))))	chrX:152953540-152953801(+)$1	1	190	209	11.6515
.))))))))))))).))))	chr16:30081493-30081765(+)$1	1	235	254	10.5851
..))).))))).)).))))	chr6:37787506-37787819(+)$1	1	267	286	9.9020
))).).)))).).))))))	chr11:61734777-61735183(-)$1	1	223	242	10.9546
)).)).).)))))..))..	chr6:37138029-37138340(+)$1	1	278	297	9.2159
.)))..).)).))).))..	chrX:152953601-152953886(+)$1	1	260	279	10.3004
)))...))))))))).)))	chr11:2398561-2398877(+)$1	1	289	308	9.7103
)).))))))).))))))))	chr17:80055905-80056199(-)$1	1	256	275	9.2806
.)))).)))).))).).))	chr6:37137955-37138229(+)$1	1	251	270	11.7966
)))))..)))))))...))	chr16:2802651-2802946(+)$1	1	273	292	9.2886
).))).)))).)))))).)	chr9:100745555-100745887(+)$1	1	155	174	11.2262
).))).)))).))))).))	chr8:101733773-101734042(-)$1	1	217	236	12.9352
)..))).))))))))))))	chr6:34212609-34212864(+)$1	1	236	255	10.4599
))))).)))))))))))))	chr11:2160295-2160563(-)$1	1	113	132	8.8821
)))..))))).)))....)	chr12:6875608-6875935(+)$1	1	282	301	9.7895
))).)))))).)).)))))	chr1:156721254-156721539(-)$1	1	100	119	11.8985
).))).))))).)))))).	chr1:32403543-32403846(-)$1	1	151	170	9.5899
).))).))))))...))))	chr7:75677322-75677621(+)$1	1	230	249	8.7677
))....)))).)))))...	chr11:2160379-2160642(-)$1	1	229	248	10.2472
)))))))))).))))))))	chr1:26798903-26799202(+)$1	1	249	268	8.4427
).))).))))))).)))))	chr11:809924-810140(+)$1	1	157	176	11.7041
))..)))....))).))))	chr19:1241671-1242017(+)$1	1	132	151	9.4644
..))).)))).))..))..	chr16:58231517-58231871(-)$1	1	267	286	12.0803
))))..))))...))))))	chr3:141595429-141595715(+)$1	1	137	156	10.1009
).))).))))))).)))))	chr11:809866-810124(+)$1	1	215	234	11.7041
))))).)))).))).))..	chr16:2802591-2802851(+)$1	1	237	256	12.7563
))))..))))...))))..	chr1:156721115-156721397(-)$1	1	226	245	9.3005
..))))))))))).)))).	chr6:53213554-53213819(-)$1	1	233	252	9.4505
.))))))))).)))))).)	chr2:97541639-97542011(-)$1	1	288	307	10.3304
..))).)))).).)))..)	chr10:17271178-17271433(+)$1	1	234	253	12.1045
)).)).))))..)).))..	chr19:49611208-49611487(+)$1	1	236	255	11.9989
)).))))))).))).....	chr8:101733876-101734160(-)$1	1	233	252	9.9114

#PSSM
: : 0.14	F : 0.14	E : 0.11	C : 0.11	D : 0.08	B : 0.08	} : 0.05	Z : 0.02	I : 0.02	b : 0.02	H : 0.02	A : 0.02	g : 0.02	Y : 0.02	@ : 0.02	
} : 0.17	C : 0.17	: : 0.14	E : 0.11	B : 0.11	F : 0.11	D : 0.05	Y : 0.05	I : 0.02	
C : 0.50	} : 0.11	E : 0.08	F : 0.08	D : 0.05	Y : 0.05	: : 0.02	B : 0.02	~ : 0.02	
C : 0.55	E : 0.08	} : 0.05	B : 0.05	Y : 0.05	F : 0.05	: : 0.02	Z : 0.02	D : 0.02	~ : 0.02	
C : 0.50	Y : 0.14	E : 0.08	B : 0.08	: : 0.02	A : 0.02	Z : 0.02	D : 0.02	~ : 0.02	F : 0.02	
} : 0.47	Y : 0.14	C : 0.11	E : 0.08	: : 0.02	Z : 0.02	B : 0.02	~ : 0.02	F : 0.02	D : 0.02	
D : 0.73	E : 0.08	A : 0.05	Y : 0.02	} : 0.02	F : 0.02	C : 0.02	
D : 0.76	E : 0.08	} : 0.05	B : 0.02	F : 0.02	~ : 0.02	
D : 0.76	E : 0.11	B : 0.05	F : 0.02	~ : 0.02	
D : 0.76	E : 0.14	B : 0.02	F : 0.02	~ : 0.02	
} : 0.52	E : 0.14	C : 0.08	D : 0.05	Z : 0.05	J : 0.02	F : 0.02	~ : 0.02	Y : 0.02	
C : 0.38	E : 0.11	B : 0.08	F : 0.08	} : 0.05	A : 0.05	Z : 0.05	H : 0.02	J : 0.02	I : 0.02	D : 0.02	Y : 0.02	
C : 0.38	B : 0.14	E : 0.11	F : 0.08	Z : 0.08	} : 0.05	H : 0.02	J : 0.02	I : 0.02	D : 0.02	
C : 0.32	} : 0.14	F : 0.11	E : 0.08	B : 0.05	I : 0.05	Y : 0.05	A : 0.02	H : 0.02	J : 0.02	Z : 0.02	D : 0.02	
} : 0.23	E : 0.11	F : 0.11	D : 0.11	C : 0.05	I : 0.05	Y : 0.05	Z : 0.05	: : 0.02	H : 0.02	B : 0.02	J : 0.02	~ : 0.02	@ : 0.02	
F : 0.17	B : 0.17	C : 0.11	E : 0.11	D : 0.11	I : 0.05	: : 0.02	} : 0.02	H : 0.02	A : 0.02	Z : 0.02	J : 0.02	~ : 0.02	@ : 0.02	
F : 0.20	B : 0.14	D : 0.11	C : 0.08	E : 0.08	: : 0.05	I : 0.05	} : 0.05	H : 0.02	Z : 0.02	J : 0.02	~ : 0.02	Y : 0.02	@ : 0.02	
: : 0.14	F : 0.14	E : 0.11	D : 0.11	C : 0.05	J : 0.05	I : 0.05	Y : 0.05	} : 0.05	Z : 0.05	H : 0.02	B : 0.02	~ : 0.02	@ : 0.02	
: : 0.20	C : 0.17	E : 0.11	F : 0.11	J : 0.05	I : 0.05	D : 0.05	Z : 0.05	} : 0.02	Y : 0.02	H : 0.02	B : 0.02	@ : 0.02	

#score	356.0213847892853
#seq	34
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_UTR_m3_run2.txt

#BEAR
c[ddddqqqqqqqqdddd]	chr1:156109200-156109461(+)$1	261	148	167	14.0372
f[ddddqqqqqqqqdddd2	chr8:145617871-145618139(+)$1	268	24	43	13.8282
e[ddddqqqqqqqqdddd]	chr3:156865631-156865879(-)$1	248	67	86	13.9291
dd[abbqqqqqqqqbb]a]	chr19:5140924-5141198(+)$1	274	191	210	13.3120
ggggggqqqqqqqqggggg	chr11:824975-825274(+)$1	299	191	210	14.0512
bb[cccqqqqqqqqccc]b	chr7:71876957-71877244(-)$1	287	176	195	14.4145
#bb[bbqqqqqqqqbb]bb	chr7:45139689-45140013(-)$1	324	24	43	12.1523
:eeeeeqqqqqqqqeeeee	chr16:1819416-1819790(+)$1	374	314	333	12.8283
::ddddqqqqqqqqddddg	chr22:20100122-20100380(-)$1	258	125	144	11.9933
$$$cccqqqqqqqqccc55	chr11:612016-612303(+)$1	287	60	79	12.8796
ffffffqqqqqqqqfffff	chr9:139756698-139756943(-)$1	245	72	91	13.3330
ee[cccqqqqqqqqccc]e	chr16:1413739-1414066(-)$1	327	151	170	14.9655
Deeeeeqqqqqqqqeeeee	chr17:8062487-8062726(-)$1	239	84	103	12.7105
eeeebbqqqqqqqqbb]ee	chr17:8062526-8062774(-)$1	248	9	28	13.1924
Feeeeeqqqqqqqqeeeee	chr17:48829803-48830012(+)$1	209	7	26	13.3888
[eeeeeqqqqqqqqeeeee	chr1:2121205-2121455(-)$1	250	204	223	13.7798
hhhh[aqqqqqqqqa]hhh	chr1:156495304-156495557(-)$1	253	153	172	12.5593
ggggggqqqqqqqqggggg	chr6:33377464-33377719(+)$1	255	150	169	14.0512
$$ddddqqqqqqqqdddd5	chr19:2754932-2755200(-)$1	268	112	131	12.7587
HH:cccqqqqqqqqcccgg	chr7:5569351-5569632(-)$1	281	115	134	12.6472
gg[cccqqqqqqqqccc]g	chr21:46935006-46935276(-)$1	270	230	249	15.1871
dd!!bbqqqqqqqqbb]dd	chr2:47710157-47710437(+)$1	280	147	166	13.0174
c[ddddqqqqqqqqddddc	chr19:1470447-1470695(-)$1	248	59	78	13.8529
cc[cccqqqqqqqqccc]c	chr1:990410-990660(+)$1	250	25	44	15.0277
[eeeeeqqqqqqqqeeeee	chr17:7476527-7476763(+)$1	236	124	143	13.7798
ffffffqqqqqqqqfffff	chr16:2820991-2821284(+)$1	293	167	186	13.3330
ggggggqqqqqqqqggggg	chr1:1683934-1684252(-)$1	318	142	161	14.0512
ffff[aqqqqqqqqa]fff	chr22:50357255-50357498(+)$1	243	129	148	13.4754
ffffffqqqqqqqqfffff	chr22:20099911-20100163(-)$1	252	210	229	13.3330
ee[cccqqqqqqqqcccee	chr19:47222901-47223172(-)$1	271	171	190	14.8333
cc[cccqqqqqqqqccc]c	chr2:175430888-175431182(+)$1	294	27	46	15.0277
[a[cccqqqqqqqqccca]	chr1:1155930-1156230(-)$1	300	165	184	15.1173
b!!cccqqqqqqqqccc22	chrX:153195388-153195773(-)$1	385	28	47	14.8358
ggddddqqqqqqqqdddd:	chr3:193856050-193856313(+)$1	263	63	82	12.9503
hh[cccqqqqqqqqccc22	chr17:27877931-27878180(+)$1	249	85	104	14.4335
f!!cccqqqqqqqqccc55	chr14:24105522-24105856(+)$1	334	150	169	13.6306
EE:cccqqqqqqqqcccff	chr11:67202551-67202814(+)$1	263	210	229	11.8656
cc[cccqqqqqqqqccc]c	chr1:1322410-1322637(-)$1	227	67	86	15.0277
d"""bbqqqqqqqqbbddd	chr8:145737531-145737787(-)$1	256	141	160	13.0417
gggg[aqqqqqqqqa]ggg	chr20:31172459-31172781(-)$1	322	120	139	13.9766
bb[cccqqqqqqqqcccbb	chr3:47050714-47050974(+)$1	260	233	252	13.9228
ggggggqqqqqqqqggggg	chr17:79878090-79878339(-)$1	249	79	98	14.0512
ffffffqqqqqqqqfffff	chr14:20917448-20917712(-)$1	264	168	187	13.3330
ff!!bbqqqqqqqqbb22f	chr5:1815888-1816167(+)$1	279	9	28	13.1686
###cccqqqqqqqqccc44	chr6:32948375-32948613(+)$1	238	87	106	14.9785
b[ddddqqqqqqqqdddd]	chrX:48830079-48830383(-)$1	304	264	283	13.8576
!eeeeeqqqqqqqqeeeee	chr19:1434929-1435178(+)$1	249	141	160	13.7893
dbbcccqqqqqqqqccc]b	chr17:79993818-79994098(-)$1	280	182	201	13.9030
"""cccqqqqqqqqccc22	chr3:50325307-50325605(-)$1	298	140	159	14.8336
""ddddqqqqqqqqdddd]	chrX:39956418-39956663(-)$1	245	9	28	13.9758
feeeeeqqqqqqqqeeeee	chr16:89006148-89006381(-)$1	233	100	119	13.6646
=eeeeeqqqqqqqqeeeee	chr19:50163963-50164228(-)$1	265	27	46	13.7077
d!!cccqqqqqqqqccc22	chr16:89627196-89627424(+)$1	228	116	135	14.8772
ff[cccqqqqqqqqccc]f	chr16:89787357-89787651(+)$1	294	187	206	15.0117
g[ddddqqqqqqqqdddd]	chr1:156109470-156109770(+)$1	300	78	97	14.0612
!eeeeeqqqqqqqqeeeee	chr20:60884671-60884893(-)$1	222	166	185	13.7893
ddddbbqqqqqqqqbb333	chr22:50685256-50685507(-)$1	251	25	44	13.2800
[ccc[aqqqqqqqqa]ccc	chr6:26158746-26158997(+)$1	251	157	176	13.9791
ffffffqqqqqqqqfffff	chr2:97526212-97526456(-)$1	244	64	83	13.3330
(((cccqqqqqqqqccc33	chr7:71877104-71877368(-)$1	264	233	252	13.2093
eeecccqqqqqqqqcccFF	chr17:72858733-72858971(-)$1	238	35	54	13.7086

#otherMatches

#Seq PSSM
CAGGCUCACUGCCAGGCCA	chr1:156109200-156109461(+)$1	261	148	167	14.0372
UUCCUUAUGGCUAAAAGGU	chr8:145617871-145618139(+)$1	268	24	43	13.8282
UCAGGUUCAAUUGUACUUU	chr3:156865631-156865879(-)$1	248	67	86	13.9291
GUGCCCACGAGCCCGGCGG	chr19:5140924-5141198(+)$1	274	191	210	13.3120
UGAAGAAUUAUUUAUUUUC	chr11:824975-825274(+)$1	299	191	210	14.0512
gcagaaggaauaaauuccg	chr7:71876957-71877244(-)$1	287	176	195	14.4145
UGGCAGAAAGGCGCCUACC	chr7:45139689-45140013(-)$1	324	24	43	12.1523
UGGGGGAUGAUGUGCUCCC	chr16:1819416-1819790(+)$1	374	314	333	12.8283
CAGUGGACCUGUUCCCGCA	chr22:20100122-20100380(-)$1	258	125	144	11.9933
CUACUUGGAAGAUAAAGCA	chr11:612016-612303(+)$1	287	60	79	12.8796
AUGUUGAAGAGGGGCAGCG	chr9:139756698-139756943(-)$1	245	72	91	13.3330
UCAGCUUCCGGGGUGGUAG	chr16:1413739-1414066(-)$1	327	151	170	14.9655
GAUAUCUAAGCUGUGGUGU	chr17:8062487-8062726(-)$1	239	84	103	12.7105
UUGUCUUUUUAAAUGGCAC	chr17:8062526-8062774(-)$1	248	9	28	13.1924
UUUAAGAAAUAUUACUUAA	chr17:48829803-48830012(+)$1	209	7	26	13.3888
UGGCCGAGUGAGUGUGGCC	chr1:2121205-2121455(-)$1	250	204	223	13.7798
UUGUUAUUUCAGCUUCAUA	chr1:156495304-156495557(-)$1	253	153	172	12.5593
UCAAAUAAAGAAUAGUUUG	chr6:33377464-33377719(+)$1	255	150	169	14.0512
CCAGGGAAGCUUACCCCUC	chr19:2754932-2755200(-)$1	268	112	131	12.7587
GCGCCCGGUUGGGAGGGGG	chr7:5569351-5569632(-)$1	281	115	134	12.6472
UUCUCUGUCUCUGUGGAAA	chr21:46935006-46935276(-)$1	270	230	249	15.1871
AUAGGCAAUAAUAAGUGAU	chr2:47710157-47710437(+)$1	280	147	166	13.0174
CUCGCCCCACCUGCGGCGG	chr19:1470447-1470695(-)$1	248	59	78	13.8529
CUUGCCUGAGUGUUGGCCG	chr1:990410-990660(+)$1	250	25	44	15.0277
GCGGCUAAAACACGGGUCG	chr17:7476527-7476763(+)$1	236	124	143	13.7798
GGGCCAGGGAGGCAUGGCC	chr16:2820991-2821284(+)$1	293	167	186	13.3330
CUGCUGACACCCCGCGGUG	chr1:1683934-1684252(-)$1	318	142	161	14.0512
AGGCCCUGAUUCCUGUGCC	chr22:50357255-50357498(+)$1	243	129	148	13.4754
UGGCCUGCUGCUAGGGGCC	chr22:20099911-20100163(-)$1	252	210	229	13.3330
GUAUAUCUGUAUAAAUAAC	chr19:47222901-47223172(-)$1	271	171	190	14.8333
cUAUUGUGUUUUUUUAAAA	chr2:175430888-175431182(+)$1	294	27	46	15.0277
CCUCCGUCUACCUUUGGGA	chr1:1155930-1156230(-)$1	300	165	184	15.1173
GGCUCCCUUUGUCUGGAAA	chrX:153195388-153195773(-)$1	385	28	47	14.8358
GGACUUUUUUGAUUAAGUG	chr3:193856050-193856313(+)$1	263	63	82	12.9503
uuauuuaaaaaaaaaaaga	chr17:27877931-27878180(+)$1	249	85	104	14.4335
uaagagcuguaacacucac	chr14:24105522-24105856(+)$1	334	150	169	13.6306
GAAAGUGUGUGUCUGCUGG	chr11:67202551-67202814(+)$1	263	210	229	11.8656
GGGAGUACCUGAUGGCUGC	chr1:1322410-1322637(-)$1	227	67	86	15.0277
CCCGGGGGACUUGACCGCU	chr8:145737531-145737787(-)$1	256	141	160	13.0417
GCUGGGAGCGCGAGCGCAG	chr20:31172459-31172781(-)$1	322	120	139	13.9766
GGCGGGCGAUGUUACCCCC	chr3:47050714-47050974(+)$1	260	233	252	13.9228
GGAUGGUGGGAUUUUUAUC	chr17:79878090-79878339(-)$1	249	79	98	14.0512
CUUCCACUUCUUAUUGGAA	chr14:20917448-20917712(-)$1	264	168	187	13.3330
AAUGCUUAAUAUCUAGAUU	chr5:1815888-1816167(+)$1	279	9	28	13.1686
UCUUCAGACACCAGUGAUU	chr6:32948375-32948613(+)$1	238	87	106	14.9785
CGUUCUUUUCAACCAGGAG	chrX:48830079-48830383(-)$1	304	264	283	13.8576
UGAGGUUUUUAAAUAUUUC	chr19:1434929-1435178(+)$1	249	141	160	13.7893
AUCCUCUUUCUGCUGAGUG	chr17:79993818-79994098(-)$1	280	182	201	13.9030
CUUGGGACCCUGACCCCUU	chr3:50325307-50325605(-)$1	298	140	159	14.8336
UCGCCGCGCUUCUCCGGCC	chrX:39956418-39956663(-)$1	245	9	28	13.9758
UGGGACUCCACUGUGUCCC	chr16:89006148-89006381(-)$1	233	100	119	13.6646
CGAGGCAGCAGAGGGCCUU	chr19:50163963-50164228(-)$1	265	27	46	13.7077
gUCCGGCCUCUCACUCGCU	chr16:89627196-89627424(+)$1	228	116	135	14.8772
CCAUGGGCGUCUAACCGCG	chr16:89787357-89787651(+)$1	294	187	206	15.0117
UAUUUUAUUUAGACAAGAG	chr1:156109470-156109770(+)$1	300	78	97	14.0612
CUAGGUGCUGCGUAACCUA	chr20:60884671-60884893(-)$1	222	166	185	13.7893
CACACCGAAUGAAGGGAAC	chr22:50685256-50685507(-)$1	251	25	44	13.2800
CAAUCUUUAAUGUUACGUU	chr6:26158746-26158997(+)$1	251	157	176	13.9791
GACUCCAACCCCGAGGAGU	chr2:97526212-97526456(-)$1	244	64	83	13.3330
uaagagcuguaacacucac	chr7:71877104-71877368(-)$1	264	233	252	13.2093
CCAGCCCCAGCCCCGGCCC	chr17:72858733-72858971(-)$1	238	35	54	13.7086

#DB
(.((((........)))).	chr1:156109200-156109461(+)$1	1	148	167	14.0372
(.((((........)))).	chr8:145617871-145618139(+)$1	1	24	43	13.8282
(.((((........)))).	chr3:156865631-156865879(-)$1	1	67	86	13.9291
((.(((........)).).	chr19:5140924-5141198(+)$1	1	191	210	13.3120
((((((........)))))	chr11:824975-825274(+)$1	1	191	210	14.0512
((.(((........))).)	chr7:71876957-71877244(-)$1	1	176	195	14.4145
.((.((........)).))	chr7:45139689-45140013(-)$1	1	24	43	12.1523
.(((((........)))))	chr16:1819416-1819790(+)$1	1	314	333	12.8283
..((((........))))(	chr22:20100122-20100380(-)$1	1	125	144	11.9933
...(((........)))..	chr11:612016-612303(+)$1	1	60	79	12.8796
((((((........)))))	chr9:139756698-139756943(-)$1	1	72	91	13.3330
((.(((........))).)	chr16:1413739-1414066(-)$1	1	151	170	14.9655
((((((........)))))	chr17:8062487-8062726(-)$1	1	84	103	12.7105
((((((........)).))	chr17:8062526-8062774(-)$1	1	9	28	13.1924
((((((........)))))	chr17:48829803-48830012(+)$1	1	7	26	13.3888
.(((((........)))))	chr1:2121205-2121455(-)$1	1	204	223	13.7798
((((.(........).)))	chr1:156495304-156495557(-)$1	1	153	172	12.5593
((((((........)))))	chr6:33377464-33377719(+)$1	1	150	169	14.0512
..((((........)))).	chr19:2754932-2755200(-)$1	1	112	131	12.7587
((.(((........)))((	chr7:5569351-5569632(-)$1	1	115	134	12.6472
((.(((........))).)	chr21:46935006-46935276(-)$1	1	230	249	15.1871
((..((........)).))	chr2:47710157-47710437(+)$1	1	147	166	13.0174
(.((((........)))))	chr19:1470447-1470695(-)$1	1	59	78	13.8529
((.(((........))).)	chr1:990410-990660(+)$1	1	25	44	15.0277
.(((((........)))))	chr17:7476527-7476763(+)$1	1	124	143	13.7798
((((((........)))))	chr16:2820991-2821284(+)$1	1	167	186	13.3330
((((((........)))))	chr1:1683934-1684252(-)$1	1	142	161	14.0512
((((.(........).)))	chr22:50357255-50357498(+)$1	1	129	148	13.4754
((((((........)))))	chr22:20099911-20100163(-)$1	1	210	229	13.3330
((.(((........)))))	chr19:47222901-47223172(-)$1	1	171	190	14.8333
((.(((........))).)	chr2:175430888-175431182(+)$1	1	27	46	15.0277
.(.(((........)))).	chr1:1155930-1156230(-)$1	1	165	184	15.1173
(..(((........)))..	chrX:153195388-153195773(-)$1	1	28	47	14.8358
))((((........)))).	chr3:193856050-193856313(+)$1	1	63	82	12.9503
((.(((........)))..	chr17:27877931-27878180(+)$1	1	85	104	14.4335
(..(((........)))..	chr14:24105522-24105856(+)$1	1	150	169	13.6306
((.(((........)))((	chr11:67202551-67202814(+)$1	1	210	229	11.8656
((.(((........))).)	chr1:1322410-1322637(-)$1	1	67	86	15.0277
(...((........)))))	chr8:145737531-145737787(-)$1	1	141	160	13.0417
((((.(........).)))	chr20:31172459-31172781(-)$1	1	120	139	13.9766
((.(((........)))))	chr3:47050714-47050974(+)$1	1	233	252	13.9228
((((((........)))))	chr17:79878090-79878339(-)$1	1	79	98	14.0512
((((((........)))))	chr14:20917448-20917712(-)$1	1	168	187	13.3330
((..((........))..)	chr5:1815888-1816167(+)$1	1	9	28	13.1686
...(((........)))..	chr6:32948375-32948613(+)$1	1	87	106	14.9785
(.((((........)))).	chrX:48830079-48830383(-)$1	1	264	283	13.8576
.(((((........)))))	chr19:1434929-1435178(+)$1	1	141	160	13.7893
((((((........))).)	chr17:79993818-79994098(-)$1	1	182	201	13.9030
...(((........)))..	chr3:50325307-50325605(-)$1	1	140	159	14.8336
..((((........)))).	chrX:39956418-39956663(-)$1	1	9	28	13.9758
)(((((........)))))	chr16:89006148-89006381(-)$1	1	100	119	13.6646
((((((........)))))	chr19:50163963-50164228(-)$1	1	27	46	13.7077
(..(((........)))..	chr16:89627196-89627424(+)$1	1	116	135	14.8772
((.(((........))).)	chr16:89787357-89787651(+)$1	1	187	206	15.0117
(.((((........)))).	chr1:156109470-156109770(+)$1	1	78	97	14.0612
.(((((........)))))	chr20:60884671-60884893(-)$1	1	166	185	13.7893
((((((........))...	chr22:50685256-50685507(-)$1	1	25	44	13.2800
.(((.(........).)))	chr6:26158746-26158997(+)$1	1	157	176	13.9791
((((((........)))))	chr2:97526212-97526456(-)$1	1	64	83	13.3330
...(((........)))..	chr7:71877104-71877368(-)$1	1	233	252	13.2093
)))(((........)))((	chr17:72858733-72858971(-)$1	1	35	54	13.7086

#PSSM
f : 0.18	g : 0.13	d : 0.09	c : 0.08	e : 0.08	b : 0.06	[ : 0.06	# : 0.03	: : 0.03	$ : 0.03	h : 0.03	! : 0.03	" : 0.03	D : 0.01	F : 0.01	H : 0.01	E : 0.01	= : 0.01	( : 0.01	
e : 0.21	f : 0.13	g : 0.11	[ : 0.09	b : 0.06	c : 0.06	d : 0.04	! : 0.04	" : 0.04	$ : 0.03	h : 0.03	: : 0.01	H : 0.01	a : 0.01	E : 0.01	# : 0.01	( : 0.01	
[ : 0.19	d : 0.18	e : 0.18	f : 0.09	g : 0.08	! : 0.08	b : 0.03	: : 0.03	" : 0.03	$ : 0.01	h : 0.01	# : 0.01	c : 0.01	( : 0.01	
c : 0.37	d : 0.18	e : 0.16	f : 0.09	g : 0.08	! : 0.03	a : 0.01	[ : 0.01	h : 0.01	" : 0.01	
c : 0.36	d : 0.16	e : 0.14	b : 0.11	f : 0.08	g : 0.06	[ : 0.06	
c : 0.36	d : 0.16	e : 0.14	b : 0.11	f : 0.08	g : 0.06	a : 0.06	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.36	d : 0.16	e : 0.14	b : 0.11	f : 0.08	g : 0.06	a : 0.06	
c : 0.36	d : 0.16	e : 0.14	b : 0.11	f : 0.08	g : 0.06	] : 0.06	
c : 0.37	d : 0.18	e : 0.14	f : 0.09	g : 0.08	] : 0.06	h : 0.01	2 : 0.01	3 : 0.01	
d : 0.19	e : 0.18	] : 0.13	f : 0.11	g : 0.09	2 : 0.08	a : 0.03	b : 0.03	5 : 0.03	3 : 0.03	h : 0.01	4 : 0.01	c : 0.01	F : 0.01	
e : 0.19	f : 0.14	g : 0.13	] : 0.11	2 : 0.08	c : 0.08	b : 0.06	5 : 0.04	d : 0.03	3 : 0.03	h : 0.01	: : 0.01	4 : 0.01	F : 0.01	

#score	839.0480850827056
#seq	61
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_UTR_m3_run2.txt

#BEAR
ccccccqqqqqqqqccc]c	chr5:133943997-133944290(-)$1	293	256	275	15.5639
ggggggqqqqqqqqggggg	chr4:170641375-170641624(+)$1	249	156	175	14.3510
$$$cccqqqqqqqqcccgg	chr5:70792997-70793291(+)$1	294	199	218	15.6445
cc[cccqqqqqqqqccc]c	chr11:686758-687069(-)$1	311	232	251	15.8522
ee[cccqqqqqqqqccc22	chr8:22105944-22106176(+)$1	232	3	22	15.7211
"""cccqqqqqqqqccc22	chr9:91973568-91973877(+)$1	309	149	168	16.6782
e####aqqqqqqqqa4444	chr7:8257827-8258120(-)$1	293	92	111	14.9219
aeeeeeqqqqqqqqeeeee	chr4:190864256-190864482(+)$1	226	153	172	13.7037
""ddddqqqqqqqqddddc	chr9:100777604-100777818(+)$1	214	122	141	14.9765
ceeeeeqqqqqqqqeeeee	chr2:153512708-153513010(-)$1	302	241	260	13.6061
eee[bbqqqqqqqqbbeee	chr6:31727541-31727795(+)$1	254	45	64	13.1252
bb[cccqqqqqqqqccc]b	chr14:23790738-23790986(+)$1	248	94	113	15.1878
####bbqqqqqqqqbb444	chr19:10287867-10288076(-)$1	209	86	105	14.8550
c!!cccqqqqqqqqccc22	chr3:47040350-47040582(+)$1	232	53	72	16.2852
####bbqqqqqqqqbb444	chr7:32528759-32528997(-)$1	238	51	70	14.8550
eeecccqqqqqqqqccc88	chr21:40608520-40608808(-)$1	288	49	68	14.7143
bb[cccqqqqqqqqcccbb	chr2:175213202-175213549(-)$1	347	293	312	14.5162
bbddddqqqqqqqqdddd]	chr10:103919660-103919882(+)$1	222	42	61	14.0279
======qqqqqqqq=====	chr7:64442322-64442581(-)$1	259	188	207	14.9918
iiicccqqqqqqqqccc33	chr7:16736439-16736705(+)$1	266	9	28	16.2678
ccccccqqqqqqqqccc]c	chr1:52828197-52828492(-)$1	295	149	168	15.5639
dddd[aqqqqqqqqadddd	chr2:232327812-232328102(-)$1	290	227	246	13.7773
!!ddddqqqqqqqqddddd	chr19:35769499-35769798(+)$1	299	121	140	14.8037
eeecccqqqqqqqqccc]e	chr3:49020281-49020514(+)$1	233	124	143	15.3718
iiiiiiqqqqqqqqiiiii	chr19:19638715-19638962(+)$1	247	60	79	14.5820
#a[cccqqqqqqqqccc]a	chrX:71406209-71406458(+)$1	249	124	143	16.3645
gggcccqqqqqqqqccc]g	chr16:1756193-1756431(+)$1	238	107	126	15.7243
d[ddddqqqqqqqqdddd]	chr15:89790846-89791058(+)$1	212	10	29	14.5347
"""cccqqqqqqqqccc55	chr4:89670816-89671070(-)$1	254	48	67	15.3959
======qqqqqqqq=====	chr1:154145496-154145740(-)$1	244	44	63	14.9918
"""cccqqqqqqqqccc33	chr12:133208799-133209066(-)$1	267	28	47	17.1026
!eeeeeqqqqqqqqeeeee	chr2:75917039-75917309(-)$1	270	78	97	13.9455
"""cccqqqqqqqqccc33	chr19:19603315-19603622(+)$1	307	218	237	17.1026
)))cccqqqqqqqqccc33	chr1:203015276-203015524(+)$1	248	219	238	14.9536
ggggggqqqqqqqqggggg	chr2:11928417-11928676(+)$1	259	223	242	14.3510
"""cccqqqqqqqqccc33	chr8:97243995-97244216(-)$1	221	169	188	17.1026
[eeeeeqqqqqqqqeeeee	chr17:64684987-64685263(+)$1	276	19	38	13.8592
ccddddqqqqqqqqdddd3	chr8:131249065-131249339(-)$1	274	99	118	14.6018
dddcccqqqqqqqqccc]d	chr17:27001349-27001559(+)$1	210	105	124	15.1791
"""cccqqqqqqqqccc22	chr11:16766103-16766332(+)$1	229	47	66	16.6782
ggggggqqqqqqqqggggg	chr17:73695777-73696064(+)$1	287	238	257	14.3510
ggggggqqqqqqqqggggg	chr17:73839666-73839941(-)$1	275	172	191	14.3510
ggggggqqqqqqqqggggg	chr1:231359849-231360093(-)$1	244	213	232	14.3510
!!ddddqqqqqqqqdddd]	chr11:65486300-65486525(+)$1	225	71	90	15.1083
!!ddddqqqqqqqqdddd2	chr4:39329155-39329398(-)$1	243	54	73	15.1032
####bbqqqqqqqqbb444	chr10:103577990-103578222(-)$1	232	16	35	14.8550
[a[cccqqqqqqqqccc]a	chr3:44838969-44839195(+)$1	226	83	102	16.2722
dd[cccqqqqqqqqcccdd	chr19:13888902-13889126(+)$1	224	167	186	15.1360
!!ddddqqqqqqqqdddd2	chr2:27591962-27592179(-)$1	217	177	196	15.1032
[eeeeeqqqqqqqqeeeee	chr3:50103710-50103973(+)$1	263	37	56	13.8592
b[acccqqqqqqqqccc]a	chr6:31922427-31922762(-)$1	335	271	290	15.8023
"""cccqqqqqqqqccc]d	chr7:86815155-86815397(+)$1	242	121	140	16.5465
c!!cccqqqqqqqqccccc	chr7:151879432-151879712(-)$1	280	213	232	15.9242
[ccc[aqqqqqqqqa]ccc	chr17:73178806-73179063(-)$1	257	134	153	14.5667
!eeeeeqqqqqqqqeeeee	chr1:155658341-155658595(-)$1	254	61	80	13.9455
a[ddddqqqqqqqqdddd]	chr9:6792899-6793176(+)$1	277	99	118	14.7847
b[ddddqqqqqqqqdddd2	chr1:22379109-22379336(+)$1	227	51	70	14.5138
###cccqqqqqqqqccc44	chr16:257978-258280(-)$1	302	106	125	16.7984

#otherMatches

#Seq PSSM
GUGUGUUUAAUUCUACAGU	chr5:133943997-133944290(-)$1	293	256	275	15.5639
GUCCCUAUUUCUAGAGGGA	chr4:170641375-170641624(+)$1	249	156	175	14.3510
CAAGGCAAAACAGAGUCAG	chr5:70792997-70793291(+)$1	294	199	218	15.6445
UGUGCUCAGCACACAGUUC	chr11:686758-687069(-)$1	311	232	251	15.8522
AGGUGCAUGUGCUAGCAGG	chr8:22105944-22106176(+)$1	232	3	22	15.7211
AAUGAUGAAUUUGAAUUUA	chr9:91973568-91973877(+)$1	309	149	168	16.6782
CAGGACGGAAUAUAGAGGA	chr7:8257827-8258120(-)$1	293	92	111	14.9219
CCCAGCUUGAUAUUGUUGG	chr4:190864256-190864482(+)$1	226	153	172	13.7037
CUGCAGAAACAGAACUGUU	chr9:100777604-100777818(+)$1	214	122	141	14.9765
GGGACUCUAUUUUAAGUUC	chr2:153512708-153513010(-)$1	302	241	260	13.6061
AGCUACAGUGCCAGGUGCU	chr6:31727541-31727795(+)$1	254	45	64	13.1252
CUGAGGAACUGGAGCCUGA	chr14:23790738-23790986(+)$1	248	94	113	15.1878
AUCACAUCUCAUUUUGCAA	chr19:10287867-10288076(-)$1	209	86	105	14.8550
GAGGGGAGUGGGGGCCCGA	chr3:47040350-47040582(+)$1	232	53	72	16.2852
CAAAUGUAUAGGAUCAAGA	chr7:32528759-32528997(-)$1	238	51	70	14.8550
AGUGCUUAUAUUCUGGCUC	chr21:40608520-40608808(-)$1	288	49	68	14.7143
GUACACAUACUAAAGUGAC	chr2:175213202-175213549(-)$1	347	293	312	14.5162
CUGGGAACCCAGCCUCCCA	chr10:103919660-103919882(+)$1	222	42	61	14.0279
GAACUACAGAAACCUGGUU	chr7:64442322-64442581(-)$1	259	188	207	14.9918
CCCCAAAACCUUGAUUGAC	chr7:16736439-16736705(+)$1	266	9	28	16.2678
GAGGCUGAGCUGCUGGCUC	chr1:52828197-52828492(-)$1	295	149	168	15.5639
AACUACAAAAUGGAGAGUU	chr2:232327812-232328102(-)$1	290	227	246	13.7773
AAGAUCAACAACUGGAUCG	chr19:35769499-35769798(+)$1	299	121	140	14.8037
CAGAGGGGUAAGUGCCUAC	chr3:49020281-49020514(+)$1	233	124	143	15.3718
GGGUGGCUGUGCCUCUACC	chr19:19638715-19638962(+)$1	247	60	79	14.5820
AGUGCUGACAAGAAGGCUC	chrX:71406209-71406458(+)$1	249	124	143	16.3645
ggccggauagcgagccgcg	chr16:1756193-1756431(+)$1	238	107	126	15.7243
UAGUUCUGUGAUAUGAGCA	chr15:89790846-89791058(+)$1	212	10	29	14.5347
AAGAGGACCUGACACCUGC	chr4:89670816-89671070(-)$1	254	48	67	15.3959
UUUGUCCUAUUUCUGGCAG	chr1:154145496-154145740(-)$1	244	44	63	14.9918
ACCAUCACUCAGAAGAUUC	chr12:133208799-133209066(-)$1	267	28	47	17.1026
UUUUUGGUUUGUUGCAAAA	chr2:75917039-75917309(-)$1	270	78	97	13.9455
CUCCCCUCCUUCCUGGGCC	chr19:19603315-19603622(+)$1	307	218	237	17.1026
GCAGCCCUCACCAAGGCAA	chr1:203015276-203015524(+)$1	248	219	238	14.9536
GGGUGGUUGGAAUUUCACU	chr2:11928417-11928676(+)$1	259	223	242	14.3510
GAAGCAUCAGAUCUUGCCU	chr8:97243995-97244216(-)$1	221	169	188	17.1026
GAGGCUGCAGGAAAGGCUU	chr17:64684987-64685263(+)$1	276	19	38	13.8592
GCUCUAGACCAAGAUAGAA	chr8:131249065-131249339(-)$1	274	99	118	14.6018
ACGCAGUGAGUAGUCUGUC	chr17:27001349-27001559(+)$1	210	105	124	15.1791
GGAUCUAGCAAUUGGGAGG	chr11:16766103-16766332(+)$1	229	47	66	16.6782
GGUCUUAAUCUUAAGAGAC	chr17:73695777-73696064(+)$1	287	238	257	14.3510
CUCCAGGAGGCCUGCUGGG	chr17:73839666-73839941(-)$1	275	172	191	14.3510
CAUUUCUAGUUGCCGAAGU	chr1:231359849-231360093(-)$1	244	213	232	14.3510
AAGGAGGAUGUCAUCUCCA	chr11:65486300-65486525(+)$1	225	71	90	15.1083
GCCUCUAAAUCAAAAGAGA	chr4:39329155-39329398(-)$1	243	54	73	15.1032
GCAGUGCGGAUAAACAGGA	chr10:103577990-103578222(-)$1	232	16	35	14.8550
ACAUAAAUCGAUCAUUGAG	chr3:44838969-44839195(+)$1	226	83	102	16.2722
CAAGUCAUCCCACAGGCUG	chr19:13888902-13889126(+)$1	224	167	186	15.1360
AAGGCCGAACUUCGGGCUG	chr2:27591962-27592179(-)$1	217	177	196	15.1032
AGGAGGAACAGACCCCUCC	chr3:50103710-50103973(+)$1	263	37	56	13.8592
aaccgggacagagaccgag	chr6:31922427-31922762(-)$1	335	271	290	15.8023
UAAGGAUGUUUCGUUCCCU	chr7:86815155-86815397(+)$1	242	121	140	16.5465
AAUGGAAAUAUGUCUCCUG	chr7:151879432-151879712(-)$1	280	213	232	15.9242
AUGGCCGACGAAAAGCCCA	chr17:73178806-73179063(-)$1	257	134	153	14.5667
GGCGGCGGUUGGUGGCCGU	chr1:155658341-155658595(-)$1	254	61	80	13.9455
CCGAGGUGGAAAGUCCUCU	chr9:6792899-6793176(+)$1	277	99	118	14.7847
GUCAGGUGCGUGCCCCUGU	chr1:22379109-22379336(+)$1	227	51	70	14.5138
UGGAGUCCUUUAUUGCUGA	chr16:257978-258280(-)$1	302	106	125	16.7984

#DB
((((((........))).)	chr5:133943997-133944290(-)$1	1	256	275	15.5639
((((((........)))))	chr4:170641375-170641624(+)$1	1	156	175	14.3510
...(((........)))))	chr5:70792997-70793291(+)$1	1	199	218	15.6445
((.(((........))).)	chr11:686758-687069(-)$1	1	232	251	15.8522
((.(((........)))..	chr8:22105944-22106176(+)$1	1	3	22	15.7211
...(((........)))..	chr9:91973568-91973877(+)$1	1	149	168	16.6782
(....(........)....	chr7:8257827-8258120(-)$1	1	92	111	14.9219
((((((........)))))	chr4:190864256-190864482(+)$1	1	153	172	13.7037
..((((........)))))	chr9:100777604-100777818(+)$1	1	122	141	14.9765
((((((........)))))	chr2:153512708-153513010(-)$1	1	241	260	13.6061
(((.((........)))))	chr6:31727541-31727795(+)$1	1	45	64	13.1252
((.(((........))).)	chr14:23790738-23790986(+)$1	1	94	113	15.1878
....((........))...	chr19:10287867-10288076(-)$1	1	86	105	14.8550
(..(((........)))..	chr3:47040350-47040582(+)$1	1	53	72	16.2852
....((........))...	chr7:32528759-32528997(-)$1	1	51	70	14.8550
((((((........)))..	chr21:40608520-40608808(-)$1	1	49	68	14.7143
((.(((........)))))	chr2:175213202-175213549(-)$1	1	293	312	14.5162
((((((........)))).	chr10:103919660-103919882(+)$1	1	42	61	14.0279
((((((........)))))	chr7:64442322-64442581(-)$1	1	188	207	14.9918
((((((........)))..	chr7:16736439-16736705(+)$1	1	9	28	16.2678
((((((........))).)	chr1:52828197-52828492(-)$1	1	149	168	15.5639
((((.(........)))))	chr2:232327812-232328102(-)$1	1	227	246	13.7773
..((((........)))))	chr19:35769499-35769798(+)$1	1	121	140	14.8037
((((((........))).)	chr3:49020281-49020514(+)$1	1	124	143	15.3718
((((((........)))))	chr19:19638715-19638962(+)$1	1	60	79	14.5820
.(.(((........))).)	chrX:71406209-71406458(+)$1	1	124	143	16.3645
((((((........))).)	chr16:1756193-1756431(+)$1	1	107	126	15.7243
(.((((........)))).	chr15:89790846-89791058(+)$1	1	10	29	14.5347
...(((........)))..	chr4:89670816-89671070(-)$1	1	48	67	15.3959
((((((........)))))	chr1:154145496-154145740(-)$1	1	44	63	14.9918
...(((........)))..	chr12:133208799-133209066(-)$1	1	28	47	17.1026
.(((((........)))))	chr2:75917039-75917309(-)$1	1	78	97	13.9455
...(((........)))..	chr19:19603315-19603622(+)$1	1	218	237	17.1026
...(((........)))..	chr1:203015276-203015524(+)$1	1	219	238	14.9536
((((((........)))))	chr2:11928417-11928676(+)$1	1	223	242	14.3510
...(((........)))..	chr8:97243995-97244216(-)$1	1	169	188	17.1026
.(((((........)))))	chr17:64684987-64685263(+)$1	1	19	38	13.8592
((((((........)))).	chr8:131249065-131249339(-)$1	1	99	118	14.6018
((((((........))).)	chr17:27001349-27001559(+)$1	1	105	124	15.1791
...(((........)))..	chr11:16766103-16766332(+)$1	1	47	66	16.6782
((((((........)))))	chr17:73695777-73696064(+)$1	1	238	257	14.3510
((((((........)))))	chr17:73839666-73839941(-)$1	1	172	191	14.3510
((((((........)))))	chr1:231359849-231360093(-)$1	1	213	232	14.3510
..((((........)))).	chr11:65486300-65486525(+)$1	1	71	90	15.1083
..((((........)))).	chr4:39329155-39329398(-)$1	1	54	73	15.1032
....((........))...	chr10:103577990-103578222(-)$1	1	16	35	14.8550
.(.(((........))).)	chr3:44838969-44839195(+)$1	1	83	102	16.2722
((.(((........)))))	chr19:13888902-13889126(+)$1	1	167	186	15.1360
..((((........)))).	chr2:27591962-27592179(-)$1	1	177	196	15.1032
.(((((........)))))	chr3:50103710-50103973(+)$1	1	37	56	13.8592
(.((((........))).)	chr6:31922427-31922762(-)$1	1	271	290	15.8023
...(((........))).)	chr7:86815155-86815397(+)$1	1	121	140	16.5465
(..(((........)))))	chr7:151879432-151879712(-)$1	1	213	232	15.9242
.(((.(........).)))	chr17:73178806-73179063(-)$1	1	134	153	14.5667
.(((((........)))))	chr1:155658341-155658595(-)$1	1	61	80	13.9455
(.((((........)))).	chr9:6792899-6793176(+)$1	1	99	118	14.7847
(.((((........)))).	chr1:22379109-22379336(+)$1	1	51	70	14.5138
...(((........)))..	chr16:257978-258280(-)$1	1	106	125	16.7984

#PSSM
" : 0.13	c : 0.12	g : 0.10	! : 0.10	e : 0.08	b : 0.08	# : 0.08	d : 0.06	[ : 0.06	a : 0.03	= : 0.03	i : 0.03	$ : 0.01	) : 0.01	
e : 0.17	" : 0.13	g : 0.10	! : 0.10	c : 0.08	# : 0.08	[ : 0.06	b : 0.05	d : 0.05	= : 0.03	i : 0.03	a : 0.03	$ : 0.01	) : 0.01	
d : 0.20	e : 0.15	[ : 0.12	" : 0.12	g : 0.10	# : 0.08	c : 0.05	! : 0.03	= : 0.03	i : 0.03	$ : 0.01	) : 0.01	a : 0.01	
c : 0.48	d : 0.18	e : 0.10	g : 0.08	# : 0.06	= : 0.03	[ : 0.01	i : 0.01	
c : 0.46	d : 0.17	e : 0.10	g : 0.08	b : 0.06	= : 0.03	[ : 0.03	# : 0.01	i : 0.01	
c : 0.46	d : 0.17	e : 0.10	g : 0.08	b : 0.06	a : 0.05	= : 0.03	i : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.46	d : 0.17	e : 0.10	g : 0.08	b : 0.06	a : 0.05	= : 0.03	i : 0.01	
c : 0.46	d : 0.18	e : 0.10	g : 0.08	b : 0.06	= : 0.03	4 : 0.01	i : 0.01	] : 0.01	
c : 0.48	d : 0.18	e : 0.12	g : 0.08	4 : 0.06	= : 0.03	i : 0.01	
d : 0.20	] : 0.18	e : 0.12	g : 0.10	4 : 0.08	3 : 0.08	2 : 0.06	= : 0.03	c : 0.03	8 : 0.01	b : 0.01	i : 0.01	5 : 0.01	
e : 0.13	g : 0.12	2 : 0.12	c : 0.10	3 : 0.10	4 : 0.08	d : 0.08	] : 0.06	a : 0.05	b : 0.03	= : 0.03	8 : 0.01	i : 0.01	5 : 0.01	

#score	877.2065277303338
#seq	58
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_UTR_m1_run1.txt

#BEAR
eeee[ccc[bb"""a[ddddoooooodddd]a22bb]ccc	chr2:242447635-242447907(-)$1	272	1	41	13.7699
occceeeee[abb[a[ddddmmmmdddd]a]bb22a]eee	chr7:150777546-150777796(-)$1	250	45	85	13.4187
c$$$$$ccc[a[ccc[ddddmmmmdddd]ccc]acccccc	chr19:2272816-2273083(+)$1	267	187	227	15.2816
####eeeeea[dddd[ddddllldddddddd]a]eeeee3	chr16:4664138-4664425(-)$1	287	91	131	12.8574
eee"""eeeee"""a[ccc[aooooooa]ccc]a4444ee	chr19:56652936-56653199(+)$1	263	20	60	13.1228
&a[ffffffeeeee!!ddddmmmmdddd22eeeee]ffff	chr1:150595079-150595327(-)$1	248	72	112	13.2200
ggggggg"""a[agggggggmmmmggggggg]a]a22ggg	chr17:45772844-45773097(+)$1	253	179	219	14.4417
ddd[ccc[ccc!!eeeee[ammmmaeeeeeccc]ccc]dd	chr15:93426447-93426787(+)$1	340	160	200	13.0265
fff[ccc####iiiiiiiiimmmmiiiiiiiiicccffff	chr16:2581165-2581429(+)$1	264	26	66	13.8893
c==========[bb!!ddddooooooddddbb]=======	chr20:62331105-62331355(-)$1	250	21	61	16.3436
ggggggg"""ccc"""cccnnnnncccccc22gggggggd	chr12:131356824-131357101(+)$1	277	161	201	14.4586
eee[dddd####ccc[ddddmmmmddddccc4444dddd2	chr1:32827757-32828078(-)$1	321	121	161	13.8403
dddd[a!!dddd####ddddmmmmdddd22dddd22addd	chr19:1470165-1470435(-)$1	270	95	135	12.6604
a####ggggggg[a!!ddddllldddd4444a]ggggggg	chr13:24153309-24153621(+)$1	312	121	161	16.2946
!!ffffff!!eeeee[acccmmmmccc]a]eeeee22fff	chr7:100882662-100882934(-)$1	272	87	127	13.3142
d!!ccc[ggggggg"""cccmmmmccc333ggggggg]cc	chrX:20284785-20285011(-)$1	226	154	194	16.5836
==========a[ccc"""bbmmmmbb333ccc]a]=====	chr8:30242599-30242923(+)$1	324	146	186	16.1353
ggggggg"""ccc"""cccnnnnncccccc22gggggggd	chr12:131356942-131357208(+)$1	266	43	83	14.4586
:ggggggg!!bb!!ccc[cccmmmmccc]ccc22bbgggg	chr13:45914973-45915237(-)$1	264	71	111	12.7420
e[bb==========[ccc[bblllbb]ccc==========	chr16:89627184-89627410(+)$1	226	35	75	14.4562
==========[dddd[ddddmmmmdddd]dddd=======	chr19:42788418-42788702(+)$1	284	178	218	16.4805
c!!=========="""ddddmmmmdddd]==========c	chr2:128180658-128180880(+)$1	222	140	180	18.9883
cc!!bb[bbbb[ccc[accclllccc]a]ccc]bb]bb]b	chr19:42788308-42788565(+)$1	257	184	224	12.6258
ffffbbccc!!ccc[ccc[ammmma]ccccccccc]bb]f	chr17:7311430-7311681(+)$1	251	131	171	12.7297
ggggggddddbb####ddddmmmmdddd333bb]dddd]g	chr4:1341000-1341263(+)$1	263	81	121	14.0714
cc[iiiiiiiii!!ccc[aooooooa]ccciiiiiiiiic	chr11:3013163-3013460(-)$1	297	23	63	15.3379
===========iiiiiiiiimmmmiiiiiiiii4444===	chr17:79861199-79861456(-)$1	257	126	166	15.9994
c[ffffff!!eeeeea[cccmmmmccc]a]eeeee]ffff	chr8:12990686-12990934(-)$1	248	64	104	13.4504
d[a[ggggggg!!bbeeeeeooooooeeeee]bb333ggg	chr16:75282012-75282272(-)$1	260	65	105	13.1882
=======####bb[ffffffmmmmffffffbb]=======	chr17:79868688-79868904(-)$1	216	75	115	13.6988
===========[a[ddddoooooodddd22a]========	chr12:58005524-58005834(+)$1	310	22	62	16.6110
c"""ffffff!!bb"""ddddllldddd]bb22ffffff3	chr13:113863704-113864033(+)$1	329	169	209	13.7849
eeggggggg[ccc!!ddddnnnnndddd]cccggggggg4	chr3:186502077-186502320(+)$1	243	88	128	14.2898
ddddbb[ggggggg"""cccmmmmccc333ggggggg]bb	chrX:20284811-20285050(-)$1	239	193	233	14.6540
ccc"""ffffff####ddddmmmmdddd4444ffffff]c	chr8:144668923-144669173(-)$1	250	56	96	15.1335
cc!!eeeee[eeeee!!cccmmmmccceeeeeeeeee]cc	chr3:49051480-49051741(+)$1	261	96	136	13.5148
"===========!!a!!cccmmmmccc22a22========	chr2:240322196-240322449(-)$1	253	182	222	18.1096
a[cccbb[iiiiiiiii!!bblllbb22iiiiiiiii]bb	chr12:133405118-133405402(-)$1	284	56	96	12.0894
g"""ccc[ccc[ccc[ddddllldddd22ccc]cccccc2	chr16:87426130-87426483(+)$1	353	122	162	14.8069
####ccceeeee[ccc[cccmmmmccc]ccc]eeeee]cc	chr2:200323159-200323406(-)$1	247	15	55	14.1971
a[a[===========!!aooooooa22===========]a	chr17:79859888-79860161(-)$1	273	196	236	16.0951
ee[ggggggg!!a!!eeeeellleeeee22a333gggggg	chr1:90308870-90309112(+)$1	242	156	196	14.5528
###eeeee[ggggggg[cccmmmmccc]ggggggg]eeee	chr19:3062229-3062530(-)$1	301	38	78	14.2513
d[a[ffffff[eeeee[ccclllccceeeee]ffffff]a	chr3:184033015-184033278(+)$1	263	176	216	12.5029
cccffffff[eeeee!!ccclllccceeeeeffffff]cc	chr19:1104601-1104871(+)$1	270	67	107	12.5400
Aeeeee[gggggggbb[ddddllldddd]bb333gggggg	chr16:12008846-12009131(-)$1	285	38	78	12.8557
[============[ffffffnnnnnffffff]========	chr17:43221243-43221508(+)$1	265	165	205	13.5512
ii[ccc[a[ccc[eeeeeooooooeeeeeccc]accc]ii	chr17:33416031-33416305(-)$1	274	146	186	13.2556
dddd!!ccc####ccc[cccmmmmcccccc22ccc]dddd	chr14:55255791-55256103(+)$1	312	4	44	13.6520
========bb[bb"""ddddnnnnndddd22bbbb]====	chr7:29234364-29234612(+)$1	248	46	86	13.7735
====[ccc[bb"""a[ddddoooooodddd]a22bb]ccc	chr2:242447735-242448008(-)$1	273	102	142	14.7673
:ggggggg$$$$$cccddddoooooodddd]cccgggggg	chr16:89894848-89895104(+)$1	256	195	235	13.1629

#otherMatches

#Seq PSSM
CGGGCGCUGCAgagcgggccgggggaggccgggauggagc	chr2:242447635-242447907(-)$1	272	1	41	13.7699
GAGGGCUGCGGGAGGGCAGCGGGAGCUGGUGUUAGCGGCA	chr7:150777546-150777796(-)$1	250	45	85	13.4187
UUGAGAUUGUGAGACCGGGGCAUCCCCUUGUCCCCAAGAG	chr19:2272816-2273083(+)$1	267	187	227	15.2816
AGGACGCCCCAGGCCUCGGCAGAGCUGGGCCGGAGGGCGG	chr16:4664138-4664425(-)$1	287	91	131	12.8574
CUCGAGGUCCUGAACGCGGGAGAGAAAUGCUGAGGGAGAG	chr19:56652936-56653199(+)$1	263	20	60	13.1228
UGGCUCCUGCCCCUUCCUGCUUUUGCAGCCAGGGGUCAGG	chr1:150595079-150595327(-)$1	248	72	112	13.2200
GGGUGCCAGAGGCCCAGGCUGAGGAGCUUGGCGGCGAGGU	chr17:45772844-45773097(+)$1	253	179	219	14.4417
GGUCCUGGGGUAGGGGGCACGCGGGGCCCCGCUGCAGAGC	chr15:93426447-93426787(+)$1	340	160	200	13.0265
AGCGCCCCACCUCCCUGGCUGGAGGGUCGGGGAGGGGCUG	chr16:2581165-2581429(+)$1	264	26	66	13.8893
AGUGGUCUGGGGCUGAUCUUGCCUUGAGGAAGACCCAGGC	chr20:62331105-62331355(-)$1	250	21	61	16.3436
cccgcucccAGGCCUGGCCGCCAUGGCGCCGCGGGCGGGA	chr12:131356824-131357101(+)$1	277	161	201	14.4586
GAGGGCGCUCCGCCGCGUCUGUGUGGACCGGGAAUGCGCG	chr1:32827757-32828078(-)$1	321	121	161	13.8403
GUGGUGGGGCUCGGGUGGGCAGAGGCCCUGGGGCGACCUA	chr19:1470165-1470435(-)$1	270	95	135	12.6604
AGGGCGGGGCCCGGGUGGGCGGUGCCCUGAGCGGGGCUCC	chr13:24153309-24153621(+)$1	312	121	161	16.2946
CACAGGGGGCGGAGACGUCACUCCUGGUCCUCUCCUGCCC	chr7:100882662-100882934(-)$1	272	87	127	13.3142
ccgccgccgccgccgcugccgUGGGGCUCgggcggcgacg	chrX:20284785-20285011(-)$1	226	154	194	16.5836
cggggcgcggcggUGGAAGAAGGUUCAGGCAUGGCCCGUG	chr8:30242599-30242923(+)$1	324	146	186	16.1353
cccgcucccAGGCCUGGCCGCCAUGGCGCCGCGGGCGGGA	chr12:131356942-131357208(+)$1	266	43	83	14.4586
ACUGCACUAUCCUUACUGCCGCACACGGGGGUCUGGGGUG	chr13:45914973-45915237(-)$1	264	71	111	12.7420
CAGCGUUCGGCCGCUGCCCGGGCUCUAGGCGCGGCCGGAC	chr16:89627184-89627410(+)$1	226	35	75	14.4562
gggggcggggcggggccggugcgcgcugaccucccccgcc	chr19:42788418-42788702(+)$1	284	178	218	16.4805
gUUGGGGGCGCGGCACCAGCACCAGCUGCCCGCGCCCUCC	chr2:128180658-128180880(+)$1	222	140	180	18.9883
ccgccugccccgcccGCCGGACUCCGCGAGGGAGGAGGGA	chr19:42788308-42788565(+)$1	257	184	224	12.6258
UCCCCCGAUCAGCAUGUGGCUCCUGGCGCUGUGUCUGGUG	chr17:7311430-7311681(+)$1	251	131	171	12.7297
GGGCGCCGGGCAGAGACCUGCGGCCAGGGCGUGUCCCGUG	chr4:1341000-1341263(+)$1	263	81	121	14.0714
cggccgggcccggacgggcggguggggccgcggguccggc	chr11:3013163-3013460(-)$1	297	23	63	15.3379
AGUGCUGCUGCCUGGGCCCGGAGGUGGGCCUGGCCCCGUA	chr17:79861199-79861456(-)$1	257	126	166	15.9994
CGCCCGCUCUGGCCCCGCCCCUCGGGGGGUGGGCCCAGCG	chr8:12990686-12990934(-)$1	248	64	104	13.4504
ugcuaugugcgaggcucugugcugggGCGGGUGCAUGUGU	chr16:75282012-75282272(-)$1	260	65	105	13.1882
UGCCCGGCUCCGGUCCAGGGGUUCCCCUGGCCUCCGGGCG	chr17:79868688-79868904(-)$1	216	75	115	13.6988
CCCCCCCUCCCACAGCCUGGACCGGGGUAGGAGGGAGGGG	chr12:58005524-58005834(+)$1	310	22	62	16.6110
ggggcgggcggagcggagcucggcgggcggcggcgcucgg	chr13:113863704-113864033(+)$1	329	169	209	13.7849
GGUGCAGUUGAGGUGGCCUGGAAGGGGUGUCUGACUGCAG	chr3:186502077-186502320(+)$1	243	88	128	14.2898
ccgccgccgccgccgcugccgUGGGGCUCgggcggcgacg	chrX:20284811-20285050(-)$1	239	193	233	14.6540
GGGUGUCAGCCCCACUGCACCUUGGUGCUUCUGGGCUGUC	chr8:144668923-144669173(-)$1	250	56	96	15.1335
GUAUGGGUCAUGCAGAUGCUCCCAGGCUUGCAGGCUCCAC	chr3:49051480-49051741(+)$1	261	96	136	13.5148
cgcgcgcggccgugggaggcgggggccagcgcuggccgcg	chr2:240322196-240322449(-)$1	253	182	222	18.1096
cgcucccgcucccgcucccgcAGUGCAUGGGCGGGGGAGG	chr12:133405118-133405402(-)$1	284	56	96	12.0894
gggaccgagccgggagggccaggggcuggucugggccggg	chr16:87426130-87426483(+)$1	353	122	162	14.8069
CUCUUGCGCGUCGGUCUGCGUCUCCGCCGGCAGACGCGGC	chr2:200323159-200323406(-)$1	247	15	55	14.1971
CGGGCGAGCGCUGGAGGCGCGCAAGGAUCUGGCGCUUGGU	chr17:79859888-79860161(-)$1	273	196	236	16.0951
CAGCCGGUGCGGCGGGGUCGCCACGGCCAGGGGAGCGCUG	chr1:90308870-90309112(+)$1	242	156	196	14.5528
CUGCCGGCGUCGCCGCCAUUAGACAAUAGCgguggggccg	chr19:3062229-3062530(-)$1	301	38	78	14.2513
UGGUGCCAGCGAGACCUGGAAUUUCCGGUCUGGUUGGUCU	chr3:184033015-184033278(+)$1	263	176	216	12.5029
GGCCCUUUGUCCCCGCUAGCGGCGCUCGGGGUGGGGGAGC	chr19:1104601-1104871(+)$1	270	67	107	12.5400
GGUggggcgccccgagcccgggagccggccuucgcggggc	chr16:12008846-12009131(-)$1	285	38	78	12.8557
CCGGGGGAGGGGGAUGAGCGCAGUUUGCUCGCUUUCCUCC	chr17:43221243-43221508(+)$1	265	165	205	13.5512
UCUCCUAGGUGCCGGCCGGGAGGGCGGCCGCAGCAGGUGA	chr17:33416031-33416305(-)$1	274	146	186	13.2556
UGAUUUUGUGAGAGCGUAGGUCAUCCUCGUAAACAUAUCA	chr14:55255791-55256103(+)$1	312	4	44	13.6520
CAGAGUCCGGAGGCUGGUGCUUUCUGCGCGUCCCCAGGAC	chr7:29234364-29234612(+)$1	248	46	86	13.7735
CGGGCGCUGCAgagcgggccgggggaggccgggauggagc	chr2:242447735-242448008(-)$1	273	102	142	14.7673
AGGCCUACGAGCAGCCGCUCAACGAGGAGCAGGCGUGGGC	chr16:89894848-89895104(+)$1	256	195	235	13.1629

#DB
((((.(((.((...(.((((......)))).)..)).)))	chr2:242447635-242447907(-)$1	1	1	41	13.7699
.)))(((((.(((.(.((((....)))).).))..).)))	chr7:150777546-150777796(-)$1	1	45	85	13.4187
(.....(((.(.(((.((((....)))).))).)))))))	chr19:2272816-2273083(+)$1	1	187	227	15.2816
....((((((.((((.((((...)))))))).).))))).	chr16:4664138-4664425(-)$1	1	91	131	12.8574
(((...(((((...(.(((.(......).))).)....))	chr19:56652936-56653199(+)$1	1	20	60	13.1228
.(.(((((((((((..((((....))))..))))).))))	chr1:150595079-150595327(-)$1	1	72	112	13.2200
(((((((...(.((((((((....))))))).).)..)))	chr17:45772844-45773097(+)$1	1	179	219	14.4417
(((.(((.(((..(((((.(....))))))))).))).))	chr15:93426447-93426787(+)$1	1	160	200	13.0265
(((.(((....(((((((((....))))))))))))))))	chr16:2581165-2581429(+)$1	1	26	66	13.8893
(((((((((((.((..((((......)))))).)))))))	chr20:62331105-62331355(-)$1	1	21	61	16.3436
(((((((...(((...(((.....))))))..))))))))	chr12:131356824-131357101(+)$1	1	161	201	14.4586
(((.((((....(((.((((....)))))))....)))).	chr1:32827757-32828078(-)$1	1	121	161	13.8403
((((.(..((((....((((....))))..))))..))))	chr19:1470165-1470435(-)$1	1	95	135	12.6604
(....(((((((.(..((((...))))....).)))))))	chr13:24153309-24153621(+)$1	1	121	161	16.2946
..((((((..(((((.((((....))).).)))))..)))	chr7:100882662-100882934(-)$1	1	87	127	13.3142
(..(((.(((((((...(((....)))...))))))).))	chrX:20284785-20285011(-)$1	1	154	194	16.5836
(((((((((((.(((...((....))...))).).)))))	chr8:30242599-30242923(+)$1	1	146	186	16.1353
(((((((...(((...(((.....))))))..))))))))	chr12:131356942-131357208(+)$1	1	43	83	14.4586
.(((((((..((..(((.(((....))).)))..))))))	chr13:45914973-45915237(-)$1	1	71	111	12.7420
(.((((((((((((.(((.((...)).)))))))))))))	chr16:89627184-89627410(+)$1	1	35	75	14.4562
((((((((((.((((.((((....)))).)))))))))))	chr19:42788418-42788702(+)$1	1	178	218	16.4805
(..((((((((((...((((....)))).)))))))))))	chr2:128180658-128180880(+)$1	1	140	180	18.9883
((..((.((((.(((.((((...))).).))).)).)).)	chr19:42788308-42788565(+)$1	1	184	224	12.6258
(((((((((..(((.(((.(....).))))))))).)).)	chr17:7311430-7311681(+)$1	1	131	171	12.7297
((((((((((((....((((....))))...)).)))).)	chr4:1341000-1341263(+)$1	1	81	121	14.0714
((.(((((((((..(((.(......).)))))))))))))	chr11:3013163-3013460(-)$1	1	23	63	15.3379
((((((((((((((((((((....)))))))))....)))	chr17:79861199-79861456(-)$1	1	126	166	15.9994
(.((((((..((((((.(((....))).).))))).))))	chr8:12990686-12990934(-)$1	1	64	104	13.4504
(.(.(((((((..(((((((......))))).))...)))	chr16:75282012-75282272(-)$1	1	65	105	13.1882
(((((((....((.((((((....)))))))).)))))))	chr17:79868688-79868904(-)$1	1	75	115	13.6988
(((((((((((.(.((((......))))..).))))))))	chr12:58005524-58005834(+)$1	1	22	62	16.6110
(...((((((..((...((((...)))).))..)))))).	chr13:113863704-113864033(+)$1	1	169	209	13.7849
(((((((((.(((..((((.....)))).)))))))))).	chr3:186502077-186502320(+)$1	1	88	128	14.2898
((((((.(((((((...(((....)))...))))))).))	chrX:20284811-20285050(-)$1	1	193	233	14.6540
(((...((((((....((((....))))....)))))).)	chr8:144668923-144669173(-)$1	1	56	96	15.1335
((..(((((.(((((..(((....))))))))))))).))	chr3:49051480-49051741(+)$1	1	96	136	13.5148
.(((((((((((..(..(((....)))..)..))))))))	chr2:240322196-240322449(-)$1	1	182	222	18.1096
(.(((((.(((((((((..((...))..))))))))).))	chr12:133405118-133405402(-)$1	1	56	96	12.0894
(...(((.(((.(((.((((...))))..))).)))))).	chr16:87426130-87426483(+)$1	1	122	162	14.8069
....((((((((.(((.(((....))).))).))))).))	chr2:200323159-200323406(-)$1	1	15	55	14.1971
(.(.(((((((((((..(......)..))))))))))).)	chr17:79859888-79860161(-)$1	1	196	236	16.0951
((.(((((((..(..(((((...)))))..)...))))))	chr1:90308870-90309112(+)$1	1	156	196	14.5528
...(((((.(((((((.(((....))).))))))).))))	chr19:3062229-3062530(-)$1	1	38	78	14.2513
(.(.((((((.(((((.(((...)))))))).)))))).)	chr3:184033015-184033278(+)$1	1	176	216	12.5029
(((((((((.(((((..(((...)))))))))))))).))	chr19:1104601-1104871(+)$1	1	67	107	12.5400
((((((.(((((((((.((((...)))).))...))))))	chr16:12008846-12009131(-)$1	1	38	78	12.8557
.((((((((((((.((((((.....)))))).))))))))	chr17:43221243-43221508(+)$1	1	165	205	13.5512
((.(((.(.(((.(((((......)))))))).)))).))	chr17:33416031-33416305(-)$1	1	146	186	13.2556
((((..(((....(((.(((....))))))..))).))))	chr14:55255791-55256103(+)$1	1	4	44	13.6520
((((((((((.((...((((.....))))..)))).))))	chr7:29234364-29234612(+)$1	1	46	86	13.7735
((((.(((.((...(.((((......)))).)..)).)))	chr2:242447735-242448008(-)$1	1	102	142	14.7673
.(((((((.....(((((((......)))).)))))))))	chr16:89894848-89895104(+)$1	1	195	235	13.1629

#PSSM
c : 0.19	d : 0.13	= : 0.13	e : 0.11	g : 0.09	# : 0.05	a : 0.05	f : 0.03	: : 0.03	o : 0.01	& : 0.01	! : 0.01	" : 0.01	A : 0.01	[ : 0.01	i : 0.01	
= : 0.19	e : 0.11	c : 0.11	g : 0.11	[ : 0.11	# : 0.07	d : 0.07	! : 0.05	f : 0.03	" : 0.03	$ : 0.01	a : 0.01	i : 0.01	
= : 0.19	g : 0.13	e : 0.07	c : 0.07	# : 0.07	[ : 0.07	d : 0.07	f : 0.07	! : 0.07	a : 0.05	" : 0.03	$ : 0.01	b : 0.01	
= : 0.21	g : 0.15	[ : 0.11	f : 0.09	c : 0.07	" : 0.07	e : 0.05	# : 0.05	d : 0.05	! : 0.03	$ : 0.01	b : 0.01	i : 0.01	
= : 0.23	g : 0.17	c : 0.13	f : 0.11	e : 0.09	[ : 0.05	b : 0.05	" : 0.03	$ : 0.01	d : 0.01	# : 0.01	i : 0.01	! : 0.01	
= : 0.23	g : 0.19	c : 0.15	f : 0.11	e : 0.09	b : 0.07	" : 0.03	$ : 0.01	d : 0.01	a : 0.01	i : 0.01	! : 0.01	
= : 0.23	c : 0.17	g : 0.17	f : 0.13	e : 0.09	[ : 0.09	d : 0.03	! : 0.01	i : 0.01	b : 0.01	
= : 0.21	g : 0.17	f : 0.13	e : 0.11	c : 0.09	" : 0.05	[ : 0.05	# : 0.03	d : 0.03	! : 0.01	b : 0.01	i : 0.01	a : 0.01	
= : 0.19	g : 0.13	e : 0.09	c : 0.09	f : 0.09	[ : 0.07	" : 0.05	# : 0.05	! : 0.05	d : 0.03	b : 0.03	i : 0.03	$ : 0.01	
= : 0.19	g : 0.13	[ : 0.09	b : 0.07	# : 0.07	! : 0.07	e : 0.05	" : 0.05	c : 0.05	f : 0.05	d : 0.03	i : 0.03	a : 0.01	$ : 0.01	
= : 0.15	e : 0.13	c : 0.11	g : 0.11	b : 0.09	a : 0.07	[ : 0.07	# : 0.07	! : 0.05	i : 0.03	d : 0.01	f : 0.01	$ : 0.01	
[ : 0.13	e : 0.13	b : 0.09	c : 0.09	g : 0.09	= : 0.09	! : 0.07	i : 0.07	" : 0.05	d : 0.05	# : 0.03	f : 0.01	$ : 0.01	
c : 0.17	e : 0.11	b : 0.09	! : 0.09	# : 0.07	g : 0.07	= : 0.07	" : 0.05	a : 0.05	i : 0.05	[ : 0.05	d : 0.03	$ : 0.01	
c : 0.17	e : 0.15	" : 0.13	g : 0.09	! : 0.09	[ : 0.07	i : 0.05	b : 0.05	# : 0.05	d : 0.03	= : 0.03	a : 0.01	
c : 0.19	e : 0.13	" : 0.13	a : 0.09	! : 0.09	d : 0.05	i : 0.05	# : 0.05	g : 0.03	[ : 0.03	b : 0.03	f : 0.03	= : 0.01	
[ : 0.21	" : 0.15	! : 0.13	c : 0.13	e : 0.09	i : 0.05	# : 0.05	g : 0.03	f : 0.03	d : 0.03	a : 0.01	b : 0.01	
d : 0.36	c : 0.13	[ : 0.11	e : 0.07	" : 0.07	! : 0.07	i : 0.05	a : 0.03	f : 0.03	g : 0.01	
d : 0.40	c : 0.32	e : 0.07	i : 0.03	[ : 0.03	f : 0.03	g : 0.01	" : 0.01	! : 0.01	a : 0.01	
d : 0.38	c : 0.30	[ : 0.05	o : 0.05	i : 0.03	e : 0.03	f : 0.03	g : 0.01	b : 0.01	a : 0.01	! : 0.01	
d : 0.36	c : 0.24	o : 0.07	n : 0.05	b : 0.05	a : 0.03	i : 0.03	e : 0.03	f : 0.03	[ : 0.01	g : 0.01	
m : 0.48	o : 0.17	l : 0.13	n : 0.09	b : 0.03	d : 0.03	a : 0.01	c : 0.01	
m : 0.49	l : 0.21	o : 0.19	n : 0.09	
m : 0.49	l : 0.21	o : 0.19	n : 0.09	
m : 0.49	o : 0.19	n : 0.09	l : 0.07	d : 0.05	c : 0.05	e : 0.01	
d : 0.30	c : 0.26	o : 0.13	a : 0.05	b : 0.05	i : 0.03	e : 0.03	n : 0.03	g : 0.01	m : 0.01	f : 0.01	
d : 0.32	c : 0.28	o : 0.11	e : 0.05	b : 0.05	i : 0.03	f : 0.03	g : 0.01	] : 0.01	a : 0.01	2 : 0.01	
d : 0.40	c : 0.24	e : 0.11	] : 0.05	i : 0.03	f : 0.03	2 : 0.03	o : 0.01	g : 0.01	3 : 0.01	
d : 0.36	e : 0.13	c : 0.13	] : 0.07	3 : 0.05	2 : 0.05	a : 0.03	i : 0.03	f : 0.03	g : 0.01	4 : 0.01	= : 0.01	
] : 0.19	c : 0.15	d : 0.11	2 : 0.11	e : 0.11	3 : 0.07	i : 0.05	g : 0.03	4 : 0.03	a : 0.03	f : 0.03	= : 0.01	
c : 0.30	d : 0.11	2 : 0.09	e : 0.09	i : 0.05	3 : 0.05	a : 0.03	g : 0.03	4 : 0.03	] : 0.03	= : 0.03	f : 0.03	b : 0.03	
c : 0.23	e : 0.13	2 : 0.09	] : 0.07	g : 0.07	i : 0.07	b : 0.07	d : 0.05	= : 0.05	4 : 0.03	a : 0.03	3 : 0.01	f : 0.01	
c : 0.21	] : 0.13	b : 0.09	2 : 0.09	e : 0.07	i : 0.07	a : 0.05	g : 0.05	= : 0.05	4 : 0.03	d : 0.03	3 : 0.03	f : 0.01	
] : 0.17	g : 0.11	= : 0.11	e : 0.09	2 : 0.07	b : 0.07	c : 0.07	i : 0.07	f : 0.05	a : 0.03	d : 0.03	3 : 0.03	4 : 0.01	
= : 0.17	g : 0.13	e : 0.09	c : 0.09	2 : 0.07	a : 0.07	] : 0.07	f : 0.07	b : 0.05	4 : 0.03	i : 0.03	3 : 0.03	d : 0.01	
g : 0.19	= : 0.17	c : 0.13	e : 0.11	b : 0.09	f : 0.07	4 : 0.05	2 : 0.03	i : 0.03	a : 0.01	] : 0.01	d : 0.01	3 : 0.01	
= : 0.19	g : 0.17	] : 0.13	c : 0.09	f : 0.07	b : 0.05	e : 0.05	2 : 0.05	4 : 0.03	d : 0.03	i : 0.03	a : 0.01	3 : 0.01	
= : 0.21	g : 0.19	f : 0.13	c : 0.07	e : 0.07	] : 0.05	d : 0.05	4 : 0.03	2 : 0.03	b : 0.03	i : 0.03	a : 0.01	3 : 0.01	
= : 0.23	g : 0.19	] : 0.15	f : 0.13	c : 0.07	d : 0.07	e : 0.05	b : 0.03	4 : 0.01	i : 0.01	
= : 0.21	g : 0.19	c : 0.15	] : 0.11	f : 0.09	e : 0.07	d : 0.07	i : 0.03	b : 0.03	
c : 0.19	= : 0.19	g : 0.15	f : 0.09	d : 0.09	e : 0.05	b : 0.05	3 : 0.03	2 : 0.03	a : 0.03	4 : 0.01	i : 0.01	

#score	743.0396704615231
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_CDS_m2_run2.txt

#BEAR
::CCC{DDDDDDDD{DDDDFFFFFFKKCCCMMMMEEEE	chr9:117002396-117002646(+)$1	250	39	77	27.4729
GG{BBRRRRRRRRRFFFFFF{CCCQQQQQQQQEEEEEL	chr2:232325086-232325378(-)$1	292	16	54	30.6994
BKKBB{DDDDKKA{EEEEE{EEEEEMMMMBBKKBBFFF	chr20:17610392-17610688(-)$1	296	20	58	31.3889

#otherMatches

#Seq PSSM
acgcauccccguagcacucccuucacagcccccgugGG	chr9:117002396-117002646(+)$1	250	39	77	27.4729
UGACAUACGACAUGAGUUAUGUUUAAAGGAGGCACUUA	chr2:232325086-232325378(-)$1	292	16	54	30.6994
AGAGCCGCUGAGGGCCUGGUCCUUCCACGUCUUCACUG	chr20:17610392-17610688(-)$1	296	20	58	31.3889

#DB
..(((.((((((((.((((((((((..(((....((((	chr9:117002396-117002646(+)$1	1	39	77	27.4729
((.((.........((((((.(((........(((((.	chr2:232325086-232325378(-)$1	1	16	54	30.6994
(..((.((((..(.(((((.(((((....((..(((((	chr20:17610392-17610688(-)$1	1	20	58	31.3889

#PSSM
: : 0.33	G : 0.33	B : 0.33	
: : 0.33	G : 0.33	K : 0.33	
C : 0.33	{ : 0.33	K : 0.33	
B : 0.66	C : 0.33	
B : 0.66	C : 0.33	
{ : 0.66	R : 0.33	
D : 0.66	R : 0.33	
D : 0.66	R : 0.33	
D : 0.66	R : 0.33	
D : 0.66	R : 0.33	
D : 0.33	R : 0.33	K : 0.33	
D : 0.33	R : 0.33	K : 0.33	
D : 0.33	R : 0.33	A : 0.33	
D : 0.33	R : 0.33	{ : 0.33	
{ : 0.33	F : 0.33	E : 0.33	
D : 0.33	F : 0.33	E : 0.33	
D : 0.33	F : 0.33	E : 0.33	
D : 0.33	F : 0.33	E : 0.33	
D : 0.33	F : 0.33	E : 0.33	
F : 0.66	{ : 0.33	
F : 0.33	{ : 0.33	E : 0.33	
F : 0.33	C : 0.33	E : 0.33	
F : 0.33	C : 0.33	E : 0.33	
F : 0.33	C : 0.33	E : 0.33	
F : 0.33	Q : 0.33	E : 0.33	
K : 0.33	Q : 0.33	M : 0.33	
K : 0.33	Q : 0.33	M : 0.33	
C : 0.33	Q : 0.33	M : 0.33	
C : 0.33	Q : 0.33	M : 0.33	
C : 0.33	Q : 0.33	B : 0.33	
M : 0.33	Q : 0.33	B : 0.33	
M : 0.33	Q : 0.33	K : 0.33	
M : 0.33	E : 0.33	K : 0.33	
M : 0.33	E : 0.33	B : 0.33	
E : 0.66	B : 0.33	
E : 0.66	F : 0.33	
E : 0.66	F : 0.33	
E : 0.33	L : 0.33	F : 0.33	

#score	89.56139078406666
#seq	3
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_transcript_m2_run2.txt

#BEAR
eeeeeooooooeeeee	chr12:1800295-1800576(+)$1	281	248	264	11.1394
:ddddooooooddddE	chr19:42796944-42797186(+)$1	242	4	20	12.0371
Bddddoooooodddd:	chr11:61048090-61048336(-)$1	246	158	174	12.3203
bddddoooooodddd2	chr20:3827698-3827969(+)$1	271	239	255	13.4227
!!cccooooooccc22	chr4:74310771-74310979(+)$1	208	168	184	10.3215
ddd[aooooooa]ddd	chr9:132869749-132869997(+)$1	248	69	85	11.1896
!ddddoooooodddd]	chr6:167424338-167424594(+)$1	256	31	47	14.0376
dddddoooooodddd:	chr1:65338865-65339120(-)$1	255	82	98	12.7944
:ddddooooooddddE	chr2:188397024-188397293(+)$1	269	2	18	12.0371
[ddddooooooddddc	chr3:184098509-184098774(+)$1	265	207	223	13.7054
'ddddoooooodddd8	chr3:48732256-48732509(-)$1	253	71	87	12.8778
[ddddoooooodddd3	chr10:30723233-30723498(+)$1	265	240	256	14.0547
:ddddooooooddddc	chr7:100161510-100161735(+)$1	225	135	151	12.7951
!ddddoooooodddd2	chr16:11945085-11945349(-)$1	264	180	196	13.9820
[ddddoooooodddd2	chr20:60859127-60859448(+)$1	321	92	108	13.9481
!ddddoooooodddd5	chr4:152020792-152021041(+)$1	249	193	209	13.2499
ddd[aooooooa]ddd	chr9:139752458-139752721(+)$1	263	140	156	11.1896
eeeeeooooooeeeee	chr9:130886591-130886832(-)$1	241	13	29	11.1394
:ddddoooooodddd:	chr17:4574785-4575062(-)$1	277	248	264	12.3344
:ddddoooooodddd:	chr17:79865442-79865721(-)$1	279	150	166	12.3344
!ddddoooooodddd2	chr12:123849060-123849322(-)$1	262	2	18	13.9820
eeeeeooooooeeeee	chr20:57484773-57485013(+)$1	240	72	88	11.1394
[ddddoooooodddd2	chr3:42642537-42642786(+)$1	249	59	75	13.9481
eeeeeooooooeeeee	chr17:74732713-74732977(-)$1	264	53	69	11.1394
!ddddoooooodddd3	chr7:105517621-105517887(+)$1	266	59	75	14.0886
"ddddoooooodddd4	chr19:42400486-42400770(+)$1	284	124	140	13.8933
!ddddoooooodddd2	chr17:80021791-80022027(-)$1	236	127	143	13.9820
[ddddoooooodddd]	chr16:81703790-81704016(+)$1	226	9	25	14.0036
c[cccooooooccc33	chr1:38455035-38455294(-)$1	259	13	29	10.0917
eeeeeooooooeeeee	chr20:17613963-17614174(-)$1	211	192	208	11.1394
[ddddooooooddddb	chr11:67048225-67048507(+)$1	282	231	247	13.4592
eeeeeooooooeeeee	chr2:55460504-55460720(+)$1	216	168	184	11.1394
"ddddoooooodddd]	chr2:216285238-216285453(-)$1	215	110	126	13.9477
[ddddooooooddddd	chr2:102476239-102476494(+)$1	255	161	177	13.6643
:ddddooooooddddE	chr11:69458696-69458958(+)$1	262	176	192	12.0371
:ddddoooooodddd:	chr19:11233949-11234180(+)$1	231	102	118	12.3344
[ddddoooooodddd]	chr6:31588565-31588836(+)$1	271	65	81	14.0036
eeeeeooooooeeeee	chr3:9476090-9476350(+)$1	260	75	91	11.1394
dddddoooooodddd]	chr19:1255605-1255889(+)$1	284	36	52	13.5534
[ddddoooooodddd]	chr3:129288516-129288748(-)$1	232	4	20	14.0036
[ddddoooooodddd]	chr12:125478479-125478730(+)$1	251	110	126	14.0036
eeeeeooooooeeeee	chr19:34838877-34839128(+)$1	251	231	247	11.1394
eeeeeooooooeeeee	chr17:36865444-36865728(+)$1	284	260	276	11.1394
!ddddoooooodddd2	chr16:28875088-28875354(+)$1	266	119	135	13.9820
[ddddoooooodddd]	chr19:960120-960362(+)$1	242	201	217	14.0036
eeeeeooooooeeeee	chr2:85198587-85198834(+)$1	247	190	206	11.1394
eeeeeooooooeeeee	chr5:141005591-141005839(-)$1	248	148	164	11.1394
[ddddoooooodddd2	chr19:3982080-3982317(-)$1	237	144	160	13.9481
bddddooooooddddD	chr16:87377026-87377317(-)$1	291	80	96	12.3829
:ddddooooooddddD	chr1:24018241-24018499(+)$1	258	144	160	11.9981
!!cccooooooccc]d	chr20:44517221-44517475(-)$1	254	73	89	10.2229
!ddddoooooodddd]	chr17:73689492-73689756(+)$1	264	61	77	14.0376
:ddddooooooddddc	chr3:52524777-52524995(+)$1	218	162	178	12.7951
eeeeeooooooeeeee	chr19:57351679-57351908(-)$1	229	32	48	11.1394

#otherMatches

#Seq PSSM
GCCUUGGCCUGAGGGU	chr12:1800295-1800576(+)$1	281	248	264	11.1394
AGGGCCCGCCAGCCCC	chr19:42796944-42797186(+)$1	242	4	20	12.0371
GACCUGUGAAAAGGUG	chr11:61048090-61048336(-)$1	246	158	174	12.3203
CGCCCUCCGCUGGGUC	chr20:3827698-3827969(+)$1	271	239	255	13.4227
AGAGUAUGUAAACUAG	chr4:74310771-74310979(+)$1	208	168	184	10.3215
GCAAGUUCUCUCGUGC	chr9:132869749-132869997(+)$1	248	69	85	11.1896
ACACCAAGUAAGGUGA	chr6:167424338-167424594(+)$1	256	31	47	14.0376
CCCAGGAGAAGCUGGA	chr1:65338865-65339120(-)$1	255	82	98	12.7944
auagaaacagcucugg	chr2:188397024-188397293(+)$1	269	2	18	12.0371
AGGGGAAUCAGCCCCU	chr3:184098509-184098774(+)$1	265	207	223	13.7054
UGGAGCCCUCACUCCC	chr3:48732256-48732509(-)$1	253	71	87	12.8778
ACCAGGCACAGCUGGA	chr10:30723233-30723498(+)$1	265	240	256	14.0547
AGUUGUUCCUCCGACC	chr7:100161510-100161735(+)$1	225	135	151	12.7951
CCCCGGGGCUGUGGGA	chr16:11945085-11945349(-)$1	264	180	196	13.9820
AAGCUGGUAAGGGCUG	chr20:60859127-60859448(+)$1	321	92	108	13.9481
CGGGUUGGUGCACCCA	chr4:152020792-152021041(+)$1	249	193	209	13.2499
CCUGGACCCGCUGAGG	chr9:139752458-139752721(+)$1	263	140	156	11.1896
AUGACUCCUCUGUCAU	chr9:130886591-130886832(-)$1	241	13	29	11.1394
ACAGCUGCCAUGCUGG	chr17:4574785-4575062(-)$1	277	248	264	12.3344
AGGGUCCUCCUGCCCA	chr17:79865442-79865721(-)$1	279	150	166	12.3344
UCCAGUCGCCUCUGGU	chr12:123849060-123849322(-)$1	262	2	18	13.9820
AUCUGGAACAACAGGU	chr20:57484773-57485013(+)$1	240	72	88	11.1394
GCCUUGGCGAAGGGGA	chr3:42642537-42642786(+)$1	249	59	75	13.9481
CCCCGCAGGUACGGGG	chr17:74732713-74732977(-)$1	264	53	69	11.1394
GUAGAUGUCGUUCUGA	chr7:105517621-105517887(+)$1	266	59	75	14.0886
GGGUGCAGGGUCACCG	chr19:42400486-42400770(+)$1	284	124	140	13.8933
UGUCGUGACAGUGGCU	chr17:80021791-80022027(-)$1	236	127	143	13.9820
CUUGAACGAGCUCAAC	chr16:81703790-81704016(+)$1	226	9	25	14.0036
GUUUGUUUUUUCAGCU	chr1:38455035-38455294(-)$1	259	13	29	10.0917
CAGAUGAUGGUGUCUG	chr20:17613963-17614174(-)$1	211	192	208	11.1394
UGGGUAUGGGGACCCU	chr11:67048225-67048507(+)$1	282	231	247	13.4592
UUGUGGAAUAACACAA	chr2:55460504-55460720(+)$1	216	168	184	11.1394
GUUUCAGAUAAGAAAA	chr2:216285238-216285453(-)$1	215	110	126	13.9477
aguucuagaacgggcc	chr2:102476239-102476494(+)$1	255	161	177	13.6643
CCUCCUGCGCUGGAGA	chr11:69458696-69458958(+)$1	262	176	192	12.0371
CACCCAGAGACGGGUC	chr19:11233949-11234180(+)$1	231	102	118	12.3344
GCCAGGUGAGUCUGGG	chr6:31588565-31588836(+)$1	271	65	81	14.0036
GCAGGUAAGAUCCUGU	chr3:9476090-9476350(+)$1	260	75	91	11.1394
UCAGCCUCCCUGCUGC	chr19:1255605-1255889(+)$1	284	36	52	13.5534
GACGGCCAUCAUCGUG	chr3:129288516-129288748(-)$1	232	4	20	14.0036
CGCCACGCACCUGGCU	chr12:125478479-125478730(+)$1	251	110	126	14.0036
AGUCAUGUGGCUGACU	chr19:34838877-34839128(+)$1	251	231	247	11.1394
CAGCCGUCUCAGGCUG	chr17:36865444-36865728(+)$1	284	260	276	11.1394
AGCGGGAgccgccgcc	chr16:28875088-28875354(+)$1	266	119	135	13.9820
GGGGAAACACAUCCUG	chr19:960120-960362(+)$1	242	201	217	14.0036
GGCCCUUAGCUGGGCC	chr2:85198587-85198834(+)$1	247	190	206	11.1394
UGGGUCCUUCAGCCCA	chr5:141005591-141005839(-)$1	248	148	164	11.1394
GUGCUAUUCACAGCGU	chr19:3982080-3982317(-)$1	237	144	160	13.9481
CGGCCACAAAGGGCCC	chr16:87377026-87377317(-)$1	291	80	96	12.3829
GGGGCUACUUCGCCCG	chr1:24018241-24018499(+)$1	258	144	160	11.9981
GAGUGAAGACCCACAG	chr20:44517221-44517475(-)$1	254	73	89	10.2229
AACUCGUGGGUGAGUA	chr17:73689492-73689756(+)$1	264	61	77	14.0376
GACAGUUAUCUCUGUG	chr3:52524777-52524995(+)$1	218	162	178	12.7951
GUGGCCGUCUUGCCGC	chr19:57351679-57351908(-)$1	229	32	48	11.1394

#DB
(((((......)))))	chr12:1800295-1800576(+)$1	1	248	264	11.1394
.((((......))))(	chr19:42796944-42797186(+)$1	1	4	20	12.0371
(((((......)))).	chr11:61048090-61048336(-)$1	1	158	174	12.3203
(((((......)))).	chr20:3827698-3827969(+)$1	1	239	255	13.4227
..(((......)))..	chr4:74310771-74310979(+)$1	1	168	184	10.3215
(((.(......).)))	chr9:132869749-132869997(+)$1	1	69	85	11.1896
.((((......)))).	chr6:167424338-167424594(+)$1	1	31	47	14.0376
)((((......)))).	chr1:65338865-65339120(-)$1	1	82	98	12.7944
.((((......))))(	chr2:188397024-188397293(+)$1	1	2	18	12.0371
.((((......)))))	chr3:184098509-184098774(+)$1	1	207	223	13.7054
.((((......)))).	chr3:48732256-48732509(-)$1	1	71	87	12.8778
.((((......)))).	chr10:30723233-30723498(+)$1	1	240	256	14.0547
.((((......))))(	chr7:100161510-100161735(+)$1	1	135	151	12.7951
.((((......)))).	chr16:11945085-11945349(-)$1	1	180	196	13.9820
.((((......)))).	chr20:60859127-60859448(+)$1	1	92	108	13.9481
.((((......)))).	chr4:152020792-152021041(+)$1	1	193	209	13.2499
(((.(......).)))	chr9:139752458-139752721(+)$1	1	140	156	11.1896
(((((......)))))	chr9:130886591-130886832(-)$1	1	13	29	11.1394
.((((......)))).	chr17:4574785-4575062(-)$1	1	248	264	12.3344
.((((......)))).	chr17:79865442-79865721(-)$1	1	150	166	12.3344
.((((......)))).	chr12:123849060-123849322(-)$1	1	2	18	13.9820
(((((......)))))	chr20:57484773-57485013(+)$1	1	72	88	11.1394
.((((......)))).	chr3:42642537-42642786(+)$1	1	59	75	13.9481
(((((......)))))	chr17:74732713-74732977(-)$1	1	53	69	11.1394
.((((......)))).	chr7:105517621-105517887(+)$1	1	59	75	14.0886
.((((......)))).	chr19:42400486-42400770(+)$1	1	124	140	13.8933
.((((......)))).	chr17:80021791-80022027(-)$1	1	127	143	13.9820
.((((......)))).	chr16:81703790-81704016(+)$1	1	9	25	14.0036
(.(((......)))..	chr1:38455035-38455294(-)$1	1	13	29	10.0917
(((((......)))))	chr20:17613963-17614174(-)$1	1	192	208	11.1394
.((((......)))))	chr11:67048225-67048507(+)$1	1	231	247	13.4592
(((((......)))))	chr2:55460504-55460720(+)$1	1	168	184	11.1394
.((((......)))).	chr2:216285238-216285453(-)$1	1	110	126	13.9477
.((((......)))))	chr2:102476239-102476494(+)$1	1	161	177	13.6643
.((((......)))))	chr11:69458696-69458958(+)$1	1	176	192	12.0371
.((((......)))).	chr19:11233949-11234180(+)$1	1	102	118	12.3344
.((((......)))).	chr6:31588565-31588836(+)$1	1	65	81	14.0036
(((((......)))))	chr3:9476090-9476350(+)$1	1	75	91	11.1394
(((((......)))).	chr19:1255605-1255889(+)$1	1	36	52	13.5534
.((((......)))).	chr3:129288516-129288748(-)$1	1	4	20	14.0036
.((((......)))).	chr12:125478479-125478730(+)$1	1	110	126	14.0036
(((((......)))))	chr19:34838877-34839128(+)$1	1	231	247	11.1394
(((((......)))))	chr17:36865444-36865728(+)$1	1	260	276	11.1394
.((((......)))).	chr16:28875088-28875354(+)$1	1	119	135	13.9820
.((((......)))).	chr19:960120-960362(+)$1	1	201	217	14.0036
(((((......)))))	chr2:85198587-85198834(+)$1	1	190	206	11.1394
(((((......)))))	chr5:141005591-141005839(-)$1	1	148	164	11.1394
.((((......)))).	chr19:3982080-3982317(-)$1	1	144	160	13.9481
)((((......))))(	chr16:87377026-87377317(-)$1	1	80	96	12.3829
.((((......)))))	chr1:24018241-24018499(+)$1	1	144	160	11.9981
..(((......))).)	chr20:44517221-44517475(-)$1	1	73	89	10.2229
.((((......)))).	chr17:73689492-73689756(+)$1	1	61	77	14.0376
.((((......))))(	chr3:52524777-52524995(+)$1	1	162	178	12.7951
(((((......)))))	chr19:57351679-57351908(-)$1	1	32	48	11.1394

#PSSM
e : 0.22	[ : 0.22	! : 0.18	: : 0.16	d : 0.07	b : 0.03	" : 0.03	B : 0.01	' : 0.01	c : 0.01	
d : 0.72	e : 0.22	! : 0.03	[ : 0.01	
d : 0.72	e : 0.22	c : 0.05	
d : 0.68	e : 0.22	c : 0.05	[ : 0.03	
d : 0.68	e : 0.22	c : 0.05	a : 0.03	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
d : 0.68	e : 0.22	c : 0.05	a : 0.03	
d : 0.68	e : 0.22	c : 0.05	] : 0.03	
d : 0.72	e : 0.22	c : 0.05	
d : 0.72	e : 0.22	2 : 0.01	3 : 0.01	] : 0.01	
e : 0.22	2 : 0.16	] : 0.16	: : 0.09	d : 0.07	E : 0.05	c : 0.05	3 : 0.05	D : 0.03	8 : 0.01	5 : 0.01	4 : 0.01	b : 0.01	

#score	680.673413869257
#seq	54
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_transcript_m3_run1.txt

#BEAR
bbiiiiiiiiinnnnniiiiiiiii:	chr13:107211743-107212033(-)$1	290	191	217	12.4464
[eeeee!!cccnnnnnccceeeeeee	chr10:102738583-102738832(+)$1	249	112	138	11.8420
============lll===========	chr1:23644878-23645137(-)$1	259	218	244	11.5062
$$$$dddd[bbnnnnnbb]dddd333	chr19:10782020-10782297(+)$1	277	233	259	10.4975
eeee!!bbcccnnnnnccc333bb22	chr1:1248796-1249072(-)$1	276	108	134	11.6543
ebb[a[eeeeennnnneeeee]a]bb	chr20:62575920-62576173(-)$1	253	50	76	10.8429
===========lll===========c	chr1:35652738-35652953(-)$1	215	87	113	11.2557
ff[dddda[bbnnnnnbb]a]dddd3	chr21:45173374-45173696(+)$1	322	48	74	10.6946
$ffffff[cccnnnnnccc]ffffff	chr12:123466038-123466286(+)$1	248	84	110	11.9153
c[ccc!!ddddoooooodddd]ccc]	chr7:155465460-155465710(+)$1	250	52	78	8.7194
]bbdddd[cccnnnnnccc333dddd	chr2:242195515-242195762(-)$1	247	132	158	11.0632
eee####a!!aooooooa22a333ee	chr19:10781729-10781965(+)$1	236	122	148	9.1666
G==========nnnnn==========	chr16:89592671-89592960(+)$1	289	251	277	14.4511
gggggg[a[cccmmmmccc]a]gggg	chrX:20252825-20253032(-)$1	207	83	109	8.6899
ffff[ffffffnnnnnffffff22ff	chr17:79866651-79866885(-)$1	234	155	181	10.9030
!dddd[eeeeennnnneeeee]dddd	chr15:93528704-93529005(+)$1	301	249	275	10.3213
==========oooooo==========	chr2:11348357-11348658(-)$1	301	66	92	11.6595
ggggggg!!bboooooobb22ggggg	chr17:74733061-74733313(-)$1	252	208	234	9.2611
bggggggg[bbnnnnnbb]ggggggg	chr16:8941967-8942256(+)$1	289	59	85	12.5134
eeeeeffffffnnnnnffffff]eee	chr6:7581196-7581452(+)$1	256	177	203	10.5521
###bb"""cccnnnnnccc4444bb7	chr13:76378342-76378644(+)$1	302	237	263	11.7131
c[eeeee!!bbnnnnnbb22eeeee2	chr19:57325973-57326227(-)$1	254	30	56	10.8785
!eeeee[ddddnnnnndddd]eeeee	chr5:96073453-96073752(+)$1	299	11	37	11.0404
=========[ccclllccc=======	chr2:27651406-27651698(+)$1	292	31	57	10.7390
fiiiiiiiiiooooooiiiiiiiii3	chr9:100777546-100777752(+)$1	206	22	48	10.6959
hhhhhhh[cccnnnnnccc]hhhhhh	chr16:18812648-18812905(-)$1	257	13	39	10.3072
=========!!ammmma22=======	chr3:38167551-38167847(-)$1	296	64	90	9.4755
!bb####ddddnnnnndddd4444bb	chr15:40477345-40477693(+)$1	348	312	338	11.3830
c####ffffffnnnnnffffff333c	chr8:25167839-25168142(+)$1	303	166	192	11.9470
""ccc####bbnnnnnbb333ccc]b	chr19:54969530-54969787(+)$1	257	225	251	12.3361
ee!!gggggggnnnnnggggggg333	chrX:70510378-70510591(+)$1	213	26	52	13.2472
"""a!!eeeeennnnneeeee22a33	chr2:54158881-54159187(-)$1	306	12	38	11.8841
:ffffff[cccnnnnnccc22fffff	chr13:79942833-79943158(-)$1	325	150	176	10.9298
:==========nnnnn==========	chr2:38976295-38976559(-)$1	264	79	105	13.9731
!!a[eeeee[annnnna]eeeee]a]	chr22:45723626-45723963(+)$1	337	141	167	11.7665
===========rrrrrrrrr======	chr2:198266733-198266954(-)$1	221	137	163	9.0892
gggggggddddnnnnndddd22gggg	chr2:101644431-101644704(-)$1	273	35	61	12.0534
!!bb"""ddddnnnnndddd]bb22e	chr6:26216673-26216952(-)$1	279	178	204	11.2293
cc!!ccc[cccnnnnnccc]ccc22c	chrX:20252775-20253025(-)$1	250	37	63	12.5772
cc"""ffffffnnnnnffffffccc]	chr9:117052477-117052702(+)$1	225	29	55	11.5525
[ffffffddddnnnnndddd]fffff	chr2:102314467-102314685(+)$1	218	27	53	11.0876
d"""gggggggnnnnnggggggg333	chr11:70829772-70830039(-)$1	267	122	148	13.2558
iiiii"""cccnnnnnccc]iiiiii	chr17:62499264-62499491(-)$1	227	69	95	14.2464
bcccgggggggnnnnnggggggg]cc	chr17:39977834-39978091(+)$1	257	137	163	12.4963
#iiiiiiiiiammmma]iiiiiiiii	chr2:201334544-201334807(+)$1	263	29	55	9.3147
fffff####bbnnnnnbb4444ffff	chr1:67895718-67895949(-)$1	231	135	161	11.6008
b:iiiiiiiiinnnnniiiiiiiii:	chr13:107211708-107211943(-)$1	235	101	127	11.6012
ggg==========lll==========	chrX:76939904-76940183(-)$1	279	68	94	11.2382
iiiiiii[cccnnnnnccciiiiiii	chr9:117062804-117063036(+)$1	232	29	55	14.1476
===========nnnnn==========	chr17:78617432-78617700(+)$1	268	174	200	15.0192
[dddd!!ddddnnnnndddd]ddddd	chr3:42684729-42684986(+)$1	257	78	104	10.5314
eecccffffffnnnnnffffff333c	chr3:183432837-183433148(+)$1	311	206	232	11.5174
fff"""eeeeennnnneeeee4444f	chr17:74059953-74060255(-)$1	302	230	256	11.6720
f[bb[a[ddddnnnnnddddabb]ff	chr1:16958679-16958965(-)$1	286	46	72	10.9479
ffffff[ddddnnnnnddddffffff	chr2:11337275-11337549(-)$1	274	65	91	10.9280
gggg"""a[bbnnnnnbb]a333ggg	chr9:95991963-95992253(+)$1	290	123	149	13.2120
ggggggg!!ccclllccc22gggggg	chr6:7574271-7574495(+)$1	224	34	60	9.3154
fffffffffffnnnnnffffffgggg	chr4:666149-666399(-)$1	250	38	64	11.1904

#otherMatches

#Seq PSSM
CAGUUGCUCGAAGAACUCGAGCGACA	chr13:107211743-107212033(-)$1	290	191	217	12.4464
GUGCCACUGAGGAGGGCUCUGGCAGC	chr10:102738583-102738832(+)$1	249	112	138	11.8420
AUAAAGCUCAAAUAUUUUGAGUUUUA	chr1:23644878-23645137(-)$1	259	218	244	11.5062
GUAGGCAUGCUGAUUGAGGAUGUGGG	chr19:10782020-10782297(+)$1	277	233	259	10.4975
UGCCACGCCAGGAAUGCUGCACGCUG	chr1:1248796-1249072(-)$1	276	108	134	11.6543
GCAUCUGGCCACUCACUGGCCCGCUG	chr20:62575920-62576173(-)$1	253	50	76	10.8429
UUUUUUUCUUGCAGCGGGAAAGAGAC	chr1:35652738-35652953(-)$1	215	87	113	11.2557
AGCGGCAGAUCUCAGUGACCUUGCCC	chr21:45173374-45173696(+)$1	322	48	74	10.6946
CCUUCUCCCUGCAUCACAGAGAGAAG	chr12:123466038-123466286(+)$1	248	84	110	11.9153
AAGUCUUAUGGGAAUAAUCAUUGACA	chr7:155465460-155465710(+)$1	250	52	78	8.7194
UGGCUCGCAUCAAGAAGAUUUAUGAG	chr2:242195515-242195762(-)$1	247	132	158	11.0632
CAGAGGACGACAGUAAAGAAGGGGCU	chr19:10781729-10781965(+)$1	236	122	148	9.1666
UUUGUAAUCUGAGAAACAGAUUGCAA	chr16:89592671-89592960(+)$1	289	251	277	14.4511
UGCUGUGCUUUUCACAGAAUGGACAG	chrX:20252825-20253032(-)$1	207	83	109	8.6899
UGGGGGCCUGGGGACAUCAGGUGGCU	chr17:79866651-79866885(-)$1	234	155	181	10.9030
AGUCUUGGGUUGACUGGAUCCUGGAC	chr15:93528704-93529005(+)$1	301	249	275	10.3213
UCCAUUUUUAUUAUACUAGAAAUGGA	chr2:11348357-11348658(-)$1	301	66	92	11.6595
GCGGGACCGCUACACCAAGGAGUCCC	chr17:74733061-74733313(-)$1	252	208	234	9.2611
CUGGACCCUCCCUCUUGGUGGGUCUG	chr16:8941967-8942256(+)$1	289	59	85	12.5134
CAGGAAGAGCUGAGGAGGCUCUCUUC	chr6:7581196-7581452(+)$1	256	177	203	10.5521
CCAGCACCUCUGAGAAAGAAAAAGCC	chr13:76378342-76378644(+)$1	302	237	263	11.7131
CCCAUGAAGCCACGGAGGAAUCGUGC	chr19:57325973-57326227(-)$1	254	30	56	10.8785
UCUACACAGAAUGGCUUUUUUUGUAG	chr5:96073453-96073752(+)$1	299	11	37	11.0404
CCGGCGGUGCGGCACCGCCCAUCGUU	chr2:27651406-27651698(+)$1	292	31	57	10.7390
UGUUGUUGCCUCCAUUGGCAAUAAUC	chr9:100777546-100777752(+)$1	206	22	48	10.6959
CAGCCUGCGGGGCGUUCCCUCGGGUU	chr16:18812648-18812905(-)$1	257	13	39	10.3072
GAGGUCCAAGGCAGAAGAGUUGGGCC	chr3:38167551-38167847(-)$1	296	64	90	9.4755
UCUUUUAAUUCCUCUUGAAUAUUUAG	chr15:40477345-40477693(+)$1	348	312	338	11.3830
GCAAUAGCCCGGAAGAUGGGCUUUCC	chr8:25167839-25168142(+)$1	303	166	192	11.9470
CCGCCCCUCAGACCAGCUCCUGGCCG	chr19:54969530-54969787(+)$1	257	225	251	12.3361
UAUAAGUCAUCAGGAAGGUGGCUGAU	chrX:70510378-70510591(+)$1	213	26	52	13.2472
AAGAUACAAGAAGCCCUCUUGGUUAA	chr2:54158881-54159187(-)$1	306	12	38	11.8841
UGAGCAGCACUAUUACAGUAAUUGCU	chr13:79942833-79943158(-)$1	325	150	176	10.9298
GUUUGAGUCAGUCGCCUUGAUUCAGA	chr2:38976295-38976559(-)$1	264	79	105	13.9731
GAGGUGUUUGACGACCUGGAGCAGCA	chr22:45723626-45723963(+)$1	337	141	167	11.7665
UGCUUUGGCCAUUGCUGCCUUGGCUG	chr2:198266733-198266954(-)$1	221	137	163	9.0892
UCCUGUUUCCACACUUUGGAUGAGCA	chr2:101644431-101644704(-)$1	273	35	61	12.0534
GUCGUAAGGAGAGCUACUCCGUGUAU	chr6:26216673-26216952(-)$1	279	178	204	11.2293
CUUUAACUGAUGUGAGGUCUGUUUUG	chrX:20252775-20253025(-)$1	250	37	63	12.5772
CUGCAGGGGCUGCCAGGGCCCCGGGG	chr9:117052477-117052702(+)$1	225	29	55	11.5525
CGACAGAGACAUUUAUUGUUAUUUGU	chr2:102314467-102314685(+)$1	218	27	53	11.0876
CGAGUACCCACAGCCCGUGGGUGAGG	chr11:70829772-70830039(-)$1	267	122	148	13.2558
UUAGAGUGUGGAAAAACCAAUCUGAG	chr17:62499264-62499491(-)$1	227	69	95	14.2464
UGCCCACAGGCUACCUGUUUGUGUGG	chr17:39977834-39978091(+)$1	257	137	163	12.4963
CACGGGGGUGCCUUGGUCAUUUCUGU	chr2:201334544-201334807(+)$1	263	29	55	9.3147
CCGCGGCCCAGACCAACUCCAACGCG	chr1:67895718-67895949(-)$1	231	135	161	11.6008
CAGUUGCUCGAAGAACUCGAGCGACA	chr13:107211708-107211943(-)$1	235	101	127	11.6012
AAUAAUGUUUUAAUCUUUAAAACAUU	chrX:76939904-76940183(-)$1	279	68	94	11.2382
GUGAGGGAGCUGUGGGGGCCCUUUAC	chr9:117062804-117063036(+)$1	232	29	55	14.1476
AAGGGUAAGUGUGCUUCACUUGCUCU	chr17:78617432-78617700(+)$1	268	174	200	15.0192
GUCCUUCAUGUGAUUAAUAUUAGGAC	chr3:42684729-42684986(+)$1	257	78	104	10.5314
AAUUCAGGUAGAAAUCCUGCCUUAGG	chr3:183432837-183433148(+)$1	311	206	232	11.5174
UGGAGAUUAAAGACAUUUUAAAAAGC	chr17:74059953-74060255(-)$1	302	230	256	11.6720
UUUGAGAGGCUGGGGUGGUCCCGUAU	chr1:16958679-16958965(-)$1	286	46	72	10.9479
UUUCUUAUAGCAAAUAGCUGAAGAGA	chr2:11337275-11337549(-)$1	274	65	91	10.9280
GCGCCAAGGGCAAGCGGUGCAUUGUG	chr9:95991963-95992253(+)$1	290	123	149	13.2120
UCAUUUUUGACAGAGUGUGCAGAAUG	chr6:7574271-7574495(+)$1	224	34	60	9.3154
UUUAGGUUGCCUGAGUGGUAACAUGU	chr4:666149-666399(-)$1	250	38	64	11.1904

#DB
))(((((((((.....))))))))).	chr13:107211743-107212033(-)$1	1	191	217	12.4464
.(((((..(((.....))))))))))	chr10:102738583-102738832(+)$1	1	112	138	11.8420
((((((((((((...)))))))))))	chr1:23644878-23645137(-)$1	1	218	244	11.5062
....((((.((.....)).))))...	chr19:10782020-10782297(+)$1	1	233	259	10.4975
((((..(((((.....)))...))..	chr1:1248796-1249072(-)$1	1	108	134	11.6543
(((.(.(((((.....))))).).))	chr20:62575920-62576173(-)$1	1	50	76	10.8429
(((((((((((...)))))))))))(	chr1:35652738-35652953(-)$1	1	87	113	11.2557
((.(((((.((.....)).).)))).	chr21:45173374-45173696(+)$1	1	48	74	10.6946
.((((((.(((.....))).))))))	chr12:123466038-123466286(+)$1	1	84	110	11.9153
(.(((..((((......)))).))).	chr7:155465460-155465710(+)$1	1	52	78	8.7194
.))((((.(((.....)))...))))	chr2:242195515-242195762(-)$1	1	132	158	11.0632
(((....(..(......)..)...))	chr19:10781729-10781965(+)$1	1	122	148	9.1666
)((((((((((.....))))))))))	chr16:89592671-89592960(+)$1	1	251	277	14.4511
((((((.(.(((....))).).))))	chrX:20252825-20253032(-)$1	1	83	109	8.6899
((((.((((((.....))))))..))	chr17:79866651-79866885(-)$1	1	155	181	10.9030
.((((.(((((.....))))).))))	chr15:93528704-93529005(+)$1	1	249	275	10.3213
((((((((((......))))))))))	chr2:11348357-11348658(-)$1	1	66	92	11.6595
(((((((..((......))..)))))	chr17:74733061-74733313(-)$1	1	208	234	9.2611
((((((((.((.....)).)))))))	chr16:8941967-8942256(+)$1	1	59	85	12.5134
(((((((((((.....)))))).)))	chr6:7581196-7581452(+)$1	1	177	203	10.5521
...((...(((.....)))....)).	chr13:76378342-76378644(+)$1	1	237	263	11.7131
(.(((((..((.....))..))))).	chr19:57325973-57326227(-)$1	1	30	56	10.8785
.(((((.((((.....)))).)))))	chr5:96073453-96073752(+)$1	1	11	37	11.0404
(((((((((.(((...))))))))))	chr2:27651406-27651698(+)$1	1	31	57	10.7390
((((((((((......))))))))).	chr9:100777546-100777752(+)$1	1	22	48	10.6959
(((((((.(((.....))).))))))	chr16:18812648-18812905(-)$1	1	13	39	10.3072
(((((((((..(....)..)))))))	chr3:38167551-38167847(-)$1	1	64	90	9.4755
.((....((((.....))))....))	chr15:40477345-40477693(+)$1	1	312	338	11.3830
(....((((((.....))))))...)	chr8:25167839-25168142(+)$1	1	166	192	11.9470
..(((....((.....))...))).)	chr19:54969530-54969787(+)$1	1	225	251	12.3361
((..(((((((.....)))))))...	chrX:70510378-70510591(+)$1	1	26	52	13.2472
...(..(((((.....)))))..)..	chr2:54158881-54159187(-)$1	1	12	38	11.8841
.((((((.(((.....)))..)))))	chr13:79942833-79943158(-)$1	1	150	176	10.9298
.((((((((((.....))))))))))	chr2:38976295-38976559(-)$1	1	79	105	13.9731
..(.(((((.(.....).))))).).	chr22:45723626-45723963(+)$1	1	141	167	11.7665
(((((((((((.........))))))	chr2:198266733-198266954(-)$1	1	137	163	9.0892
(((((((((((.....))))..))))	chr2:101644431-101644704(-)$1	1	35	61	12.0534
..((...((((.....)))).))..)	chr6:26216673-26216952(-)$1	1	178	204	11.2293
((..(((.(((.....))).)))..)	chrX:20252775-20253025(-)$1	1	37	63	12.5772
((...((((((.....))))))))).	chr9:117052477-117052702(+)$1	1	29	55	11.5525
.((((((((((.....)))).)))))	chr2:102314467-102314685(+)$1	1	27	53	11.0876
(...(((((((.....)))))))...	chr11:70829772-70830039(-)$1	1	122	148	13.2558
(((((...(((.....))).))))))	chr17:62499264-62499491(-)$1	1	69	95	14.2464
(((((((((((.....))))))).))	chr17:39977834-39978091(+)$1	1	137	163	12.4963
.((((((((((....).)))))))))	chr2:201334544-201334807(+)$1	1	29	55	9.3147
(((((....((.....))....))))	chr1:67895718-67895949(-)$1	1	135	161	11.6008
).(((((((((.....))))))))).	chr13:107211708-107211943(-)$1	1	101	127	11.6012
)))((((((((((...))))))))))	chrX:76939904-76940183(-)$1	1	68	94	11.2382
(((((((.(((.....))))))))))	chr9:117062804-117063036(+)$1	1	29	55	14.1476
(((((((((((.....))))))))))	chr17:78617432-78617700(+)$1	1	174	200	15.0192
.((((..((((.....)))).)))))	chr3:42684729-42684986(+)$1	1	78	104	10.5314
(((((((((((.....))))))...)	chr3:183432837-183433148(+)$1	1	206	232	11.5174
(((...(((((.....)))))....)	chr17:74059953-74060255(-)$1	1	230	256	11.6720
(.((.(.((((.....))))))).))	chr1:16958679-16958965(-)$1	1	46	72	10.9479
((((((.((((.....))))))))))	chr2:11337275-11337549(-)$1	1	65	91	10.9280
((((...(.((.....)).)...)))	chr9:95991963-95992253(+)$1	1	123	149	13.2120
(((((((..(((...)))..))))))	chr6:7574271-7574495(+)$1	1	34	60	9.3154
)))))((((((.....))))))((((	chr4:666149-666399(-)$1	1	38	64	11.1904

#PSSM
f : 0.13	= : 0.12	e : 0.10	g : 0.10	c : 0.08	! : 0.08	b : 0.06	[ : 0.05	$ : 0.03	# : 0.03	" : 0.03	: : 0.03	i : 0.03	] : 0.01	G : 0.01	h : 0.01	d : 0.01	
= : 0.15	f : 0.15	e : 0.12	g : 0.12	b : 0.06	i : 0.06	[ : 0.05	" : 0.05	c : 0.05	d : 0.03	# : 0.03	! : 0.03	$ : 0.01	h : 0.01	: : 0.01	
= : 0.15	f : 0.13	g : 0.12	i : 0.10	e : 0.10	b : 0.08	c : 0.06	" : 0.05	d : 0.03	# : 0.03	! : 0.03	$ : 0.01	[ : 0.01	h : 0.01	a : 0.01	
= : 0.17	f : 0.12	i : 0.10	g : 0.10	e : 0.08	d : 0.06	c : 0.06	# : 0.05	b : 0.05	" : 0.05	[ : 0.03	! : 0.03	$ : 0.01	h : 0.01	a : 0.01	
= : 0.17	g : 0.13	i : 0.10	f : 0.10	e : 0.08	d : 0.08	c : 0.06	" : 0.06	# : 0.05	! : 0.03	[ : 0.03	a : 0.01	b : 0.01	h : 0.01	
= : 0.17	f : 0.17	g : 0.13	i : 0.08	" : 0.08	e : 0.06	! : 0.06	# : 0.06	d : 0.05	[ : 0.03	h : 0.01	c : 0.01	a : 0.01	
= : 0.17	f : 0.15	g : 0.12	e : 0.10	i : 0.08	# : 0.06	[ : 0.06	" : 0.06	! : 0.05	d : 0.05	b : 0.01	h : 0.01	c : 0.01	
= : 0.17	d : 0.17	[ : 0.10	f : 0.10	e : 0.08	i : 0.06	! : 0.06	a : 0.06	g : 0.06	" : 0.03	# : 0.03	b : 0.01	
c : 0.17	= : 0.17	d : 0.15	f : 0.10	[ : 0.08	e : 0.08	i : 0.06	! : 0.06	g : 0.05	# : 0.03	
c : 0.20	d : 0.15	= : 0.13	b : 0.13	f : 0.10	i : 0.06	e : 0.06	g : 0.05	! : 0.03	[ : 0.03	
c : 0.22	d : 0.15	b : 0.13	= : 0.12	f : 0.10	e : 0.06	a : 0.05	g : 0.05	i : 0.03	o : 0.03	! : 0.01	
n : 0.75	o : 0.08	c : 0.05	= : 0.03	l : 0.01	a : 0.01	r : 0.01	m : 0.01	
n : 0.75	o : 0.08	l : 0.05	m : 0.05	c : 0.01	r : 0.01	= : 0.01	
n : 0.75	l : 0.08	o : 0.08	m : 0.05	r : 0.01	
n : 0.75	o : 0.08	l : 0.06	m : 0.05	= : 0.01	r : 0.01	
n : 0.75	o : 0.08	= : 0.03	m : 0.03	l : 0.03	r : 0.01	a : 0.01	c : 0.01	
c : 0.22	d : 0.13	= : 0.12	b : 0.12	f : 0.10	e : 0.06	i : 0.05	o : 0.05	g : 0.05	a : 0.03	r : 0.01	] : 0.01	
c : 0.22	d : 0.15	b : 0.13	= : 0.12	f : 0.10	i : 0.06	e : 0.06	g : 0.05	a : 0.01	2 : 0.01	] : 0.01	r : 0.01	
c : 0.20	d : 0.15	= : 0.12	f : 0.10	e : 0.08	i : 0.06	] : 0.06	2 : 0.06	g : 0.05	b : 0.01	3 : 0.01	r : 0.01	4 : 0.01	
d : 0.17	= : 0.15	e : 0.10	f : 0.10	i : 0.08	] : 0.08	2 : 0.08	g : 0.06	3 : 0.05	a : 0.03	4 : 0.03	r : 0.01	
= : 0.17	f : 0.13	e : 0.12	i : 0.10	] : 0.08	g : 0.08	3 : 0.06	a : 0.05	2 : 0.05	4 : 0.05	d : 0.03	h : 0.01	c : 0.01	
= : 0.17	f : 0.17	i : 0.10	g : 0.10	e : 0.06	3 : 0.06	] : 0.06	4 : 0.06	d : 0.05	c : 0.03	2 : 0.03	b : 0.03	h : 0.01	
= : 0.17	g : 0.15	i : 0.10	d : 0.08	f : 0.08	e : 0.06	c : 0.06	3 : 0.06	b : 0.05	4 : 0.05	2 : 0.03	a : 0.01	] : 0.01	h : 0.01	
= : 0.17	g : 0.12	i : 0.10	3 : 0.10	f : 0.08	e : 0.06	] : 0.06	d : 0.06	c : 0.05	2 : 0.05	b : 0.03	4 : 0.03	h : 0.01	a : 0.01	
= : 0.17	f : 0.12	g : 0.12	i : 0.10	3 : 0.10	e : 0.08	d : 0.06	2 : 0.05	b : 0.05	c : 0.05	h : 0.01	] : 0.01	a : 0.01	4 : 0.01	
= : 0.15	f : 0.13	g : 0.12	3 : 0.10	e : 0.08	c : 0.08	b : 0.05	] : 0.05	d : 0.05	i : 0.05	: : 0.03	2 : 0.03	7 : 0.01	h : 0.01	

#score	662.0986142963984
#seq	58
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF469SRC_SAFB_transcript_m3_run2.txt

#BEAR
gggggggbbqqqqqqqqbb]gggggg	chr3:196693479-196693757(-)$1	278	219	245	15.4932
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65267928-65268136(+)$1	208	174	200	19.0130
hhh####bbqqqqqqqqbb333hhhh	chr9:139725814-139726111(+)$1	297	162	188	14.5535
:dddd[cccqqqqqqqqccc]ddddD	chr1:44988694-44988994(+)$1	300	123	149	13.8434
ddgggggggqqqqqqqqggggggg::	chr7:158258707-158258988(-)$1	281	118	144	14.0739
ccc[eeeeeqqqqqqqqeeeeecccd	chr10:88259703-88260066(-)$1	363	177	203	16.2726
:eeeee[bbqqqqqqqqbb]eeeee:	chr6:3319169-3319419(-)$1	250	109	135	13.6523
[eeeeecccqqqqqqqqccc]eeeee	chrX:73424500-73424746(-)$1	246	176	202	16.0237
=========qqqqqqqq=========	chr13:98011491-98011797(+)$1	306	254	280	16.3575
iiiiiiiiiqqqqqqqqiiiiiiiii	chr20:36138028-36138275(-)$1	247	145	171	15.8734
ee####cccqqqqqqqqccc]eeeee	chr3:50005781-50006047(+)$1	266	5	31	15.7198
cc!!ccc[aqqqqqqqqa]ccc22cc	chr10:125793860-125794121(-)$1	261	92	118	15.8537
[eeeeecccqqqqqqqqccc]eeeee	chr18:3597300-3597608(+)$1	308	229	255	16.0237
cc[ccc[bbqqqqqqqqbbccc333c	chr7:158050218-158050543(-)$1	325	229	255	15.8367
##gggggggqqqqqqqqggggggg22	chr6:158989397-158989651(+)$1	254	135	161	16.0681
fffff!!bbqqqqqqqqbb22fffff	chr8:17761390-17761627(-)$1	237	43	69	13.9916
b"""bb[bbqqqqqqqqbb]bb4444	chr11:65349330-65349623(+)$1	293	27	53	13.9641
ddddd[cccqqqqqqqqcccdddd]d	chr2:238487753-238488002(-)$1	249	197	223	15.6401
d[ccc[a[aqqqqqqqqa22a]ccc]	chr7:157943587-157943876(-)$1	289	138	164	16.5988
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65267983-65268191(+)$1	208	119	145	19.0130
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65268001-65268208(+)$1	207	101	127	19.0130
[ccceeeeeqqqqqqqqeeeee]ccc	chr3:197262771-197263019(-)$1	248	142	168	16.5113
dddd[ddddqqqqqqqqdddd]dddd	chr3:197243757-197244098(-)$1	341	297	323	16.9558
!!a[eeeeeqqqqqqqqeeeee]a22	chr19:56152582-56152893(+)$1	311	212	238	16.3082
Dccc[ddddqqqqqqqqdddd]cccB	chr8:13099351-13099618(-)$1	267	86	112	16.6926
eee!!ddddqqqqqqqqdddd22eee	chr19:878816-879156(-)$1	340	208	234	16.5988
''dddd[bbqqqqqqqqbb]dddd]b	chr19:879117-879483(-)$1	366	127	153	13.8342
[eeeee!!aqqqqqqqqa22eeeee]	chr20:43055589-43055863(+)$1	274	112	138	15.7477
c[ffffffaqqqqqqqqa]ffffffc	chr16:8936923-8937341(+)$1	418	104	130	14.4132
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65267957-65268176(+)$1	219	145	171	19.0130
ccccc[cccqqqqqqqqccc]cccbb	chr2:241565005-241565287(+)$1	282	125	151	16.3445
ff!!eeeeeqqqqqqqqeeeee333f	chr7:157944170-157944467(-)$1	297	123	149	15.4671
ccc[eeeeeqqqqqqqqeeeee]ccc	chr17:41058096-41058357(+)$1	261	75	101	16.2824
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65268019-65268226(+)$1	207	83	109	19.0130
!eeeee[cccqqqqqqqqccc]eeee	chr8:123831774-123832052(+)$1	278	105	131	14.0723
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65268030-65268233(+)$1	203	72	98	19.0130
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65267976-65268183(+)$1	207	126	152	19.0130
d!!ccccccqqqqqqqqccc]ccc22	chr1:146676109-146676353(-)$1	244	102	128	16.7457
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65268038-65268265(+)$1	227	64	90	19.0130
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65268026-65268230(+)$1	204	76	102	19.0130
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65267991-65268201(+)$1	210	111	137	19.0130
##cccddddqqqqqqqqdddd]ccc]	chr19:23507354-23507642(-)$1	288	192	218	18.1620
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65267945-65268157(+)$1	212	157	183	19.0130
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65267936-65268145(+)$1	209	166	192	19.0130
ccc[ccc[aqqqqqqqqa]cccccc:	chr16:8926584-8926875(+)$1	291	14	40	15.9616
cdddd[cccqqqqqqqqcccdddd::	chr14:21727245-21727535(-)$1	290	221	247	14.3475
dd"""ddddqqqqqqqqdddd22ddd	chr8:9629646-9629922(+)$1	276	149	175	16.5334
gggggggbbqqqqqqqqbb]gggggg	chr11:95982980-95983265(-)$1	285	31	57	15.4932
eeeee[cccqqqqqqqqccc]eeeee	chr22:49120642-49120988(+)$1	346	31	57	15.6625
!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65268065-65268269(+)$1	204	37	63	19.0130
"bb[bb!!aqqqqqqqqa22bb]bb3	chr16:52522680-52522940(-)$1	260	101	127	14.0040
dddd[ddddqqqqqqqqdddd22ddd	chr4:89694038-89694333(-)$1	295	245	271	16.5703

#otherMatches

#Seq PSSM
GCGGGGGUCGUUCCCUGGAGCUCCCG	chr3:196693479-196693757(-)$1	278	219	245	15.4932
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65267928-65268136(+)$1	208	174	200	19.0130
GCUGCAGGCUGAGGGGUGCGAAGGCC	chr9:139725814-139726111(+)$1	297	162	188	14.5535
UGUCUGUAGAGUUGGGGCUGGGGGCU	chr1:44988694-44988994(+)$1	300	123	149	13.8434
gugccucuaggagaggguggaggcag	chr7:158258707-158258988(-)$1	281	118	144	14.0739
GUUACCAUACAGGAUACUAUGGAACG	chr10:88259703-88260066(-)$1	363	177	203	16.2726
gucugcuucguggagaaggcguagag	chr6:3319169-3319419(-)$1	250	109	135	13.6523
CUGCUAGCUGGUUAUGAGGCAUAGCG	chrX:73424500-73424746(-)$1	246	176	202	16.0237
AAAAUGUUUCACCUUUUAAACAUUUU	chr13:98011491-98011797(+)$1	306	254	280	16.3575
UAGGGUCUUGAGGUUUGAGGACCCUA	chr20:36138028-36138275(-)$1	247	145	171	15.8734
UGAACAGGAGAGAAGAAUCCACACAU	chr3:50005781-50006047(+)$1	266	5	31	15.7198
CCCUGAGUAUGUUUCUUUCUUCCUGG	chr10:125793860-125794121(-)$1	261	92	118	15.8537
GGCUGAGUCCUCACCAAGACUUCAGC	chr18:3597300-3597608(+)$1	308	229	255	16.0237
GCUCAGACAUUUCUCGCUGCUGCACG	chr7:158050218-158050543(-)$1	325	229	255	15.8367
GGCCUGGGGUCAGGGACCCCCAGGGA	chr6:158989397-158989651(+)$1	254	135	161	16.0681
cuucuaagccuuuuuaaguagagaag	chr8:17761390-17761627(-)$1	237	43	69	13.9916
UAAGAGGUCAGGAGUCAGAGCUGGGG	chr11:65349330-65349623(+)$1	293	27	53	13.9641
GCUGGUGGCUCCUCCAUGCCCCAGAC	chr2:238487753-238488002(-)$1	249	197	223	15.6401
caggggcaggACAGUGACAGGGCCUG	chr7:157943587-157943876(-)$1	289	138	164	16.5988
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65267983-65268191(+)$1	208	119	145	19.0130
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65268001-65268208(+)$1	207	101	127	19.0130
uggugcaaucucagcucauugcaacc	chr3:197262771-197263019(-)$1	248	142	168	16.5113
guugccucaaccggauaugagacaau	chr3:197243757-197244098(-)$1	341	297	323	16.9558
GGGGUUCCCAUAAACAAGGGGAGCAG	chr19:56152582-56152893(+)$1	311	212	238	16.3082
AGAUAAUCCUAAUCCAUGGAUAAUCC	chr8:13099351-13099618(-)$1	267	86	112	16.6926
gccggggccggggccggggccggggc	chr19:878816-879156(-)$1	340	208	234	16.5988
AACCAGGGGAAGGUGAGCUGCUGGGG	chr19:879117-879483(-)$1	366	127	153	13.8342
gggcuguccuguacauuguucagcug	chr20:43055589-43055863(+)$1	274	112	138	15.7477
cguccauacccacaacaguuauggag	chr16:8936923-8937341(+)$1	418	104	130	14.4132
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65267957-65268176(+)$1	219	145	171	19.0130
UCUCAGAGCGAGGUGAGGCUGUGACA	chr2:241565005-241565287(+)$1	282	125	151	16.3445
GCGGGGGAGUAUUUCACCUCCUGAAG	chr7:157944170-157944467(-)$1	297	123	149	15.4671
ggagggagggaAGAAAGCCUUUAUUU	chr17:41058096-41058357(+)$1	261	75	101	16.2824
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65268019-65268226(+)$1	207	83	109	19.0130
GGGGGUGUCCUGCUCCAUGGGGACCC	chr8:123831774-123832052(+)$1	278	105	131	14.0723
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65268030-65268233(+)$1	203	72	98	19.0130
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65267976-65268183(+)$1	207	126	152	19.0130
UGGCUUCUCAUAUGCAAGAGCAAGAA	chr1:146676109-146676353(-)$1	244	102	128	16.7457
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65268038-65268265(+)$1	227	64	90	19.0130
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65268026-65268230(+)$1	204	76	102	19.0130
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65267991-65268201(+)$1	210	111	137	19.0130
cacugcacugcagccuaggugacaga	chr19:23507354-23507642(-)$1	288	192	218	18.1620
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65267945-65268157(+)$1	212	157	183	19.0130
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65267936-65268145(+)$1	209	166	192	19.0130
GGCUACCCGUGAAAUCCCAGGUGCUU	chr16:8926584-8926875(+)$1	291	14	40	15.9616
CUCCAAGUAAGAAAUAAUACUGGAAA	chr14:21727245-21727535(-)$1	290	221	247	14.3475
ggagaaaggggacaaugccuugacca	chr8:9629646-9629922(+)$1	276	149	175	16.5334
cugucuggauaacgaguucucaggua	chr11:95982980-95983265(-)$1	285	31	57	15.4932
CUCCCAGCCUGCGGCAUGGCAGGGAG	chr22:49120642-49120988(+)$1	346	31	57	15.6625
GUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65268065-65268269(+)$1	204	37	63	19.0130
UGGGAUAGGAAAAGUUACAGGUGCUG	chr16:52522680-52522940(-)$1	260	101	127	14.0040
UCCUCAUGUUUAUACACACAUCUAGG	chr4:89694038-89694333(-)$1	295	245	271	16.5703

#DB
(((((((((........)).))))))	chr3:196693479-196693757(-)$1	1	219	245	15.4932
.(((.((((........)))).))).	chr11:65267928-65268136(+)$1	1	174	200	19.0130
(((....((........))...))))	chr9:139725814-139726111(+)$1	1	162	188	14.5535
.((((.(((........))).)))))	chr1:44988694-44988994(+)$1	1	123	149	13.8434
))(((((((........)))))))..	chr7:158258707-158258988(-)$1	1	118	144	14.0739
(((.(((((........))))))))(	chr10:88259703-88260066(-)$1	1	177	203	16.2726
.(((((.((........)).))))).	chr6:3319169-3319419(-)$1	1	109	135	13.6523
.((((((((........))).)))))	chrX:73424500-73424746(-)$1	1	176	202	16.0237
(((((((((........)))))))))	chr13:98011491-98011797(+)$1	1	254	280	16.3575
(((((((((........)))))))))	chr20:36138028-36138275(-)$1	1	145	171	15.8734
((....(((........))).)))))	chr3:50005781-50006047(+)$1	1	5	31	15.7198
((..(((.(........).)))..))	chr10:125793860-125794121(-)$1	1	92	118	15.8537
.((((((((........))).)))))	chr18:3597300-3597608(+)$1	1	229	255	16.0237
((.(((.((........)))))...)	chr7:158050218-158050543(-)$1	1	229	255	15.8367
..(((((((........)))))))..	chr6:158989397-158989651(+)$1	1	135	161	16.0681
(((((..((........))..)))))	chr8:17761390-17761627(-)$1	1	43	69	13.9916
(...((.((........)).))....	chr11:65349330-65349623(+)$1	1	27	53	13.9641
(((((.(((........))))))).)	chr2:238487753-238488002(-)$1	1	197	223	15.6401
(.(((.(.(........)..).))).	chr7:157943587-157943876(-)$1	1	138	164	16.5988
.(((.((((........)))).))).	chr11:65267983-65268191(+)$1	1	119	145	19.0130
.(((.((((........)))).))).	chr11:65268001-65268208(+)$1	1	101	127	19.0130
.((((((((........))))).)))	chr3:197262771-197263019(-)$1	1	142	168	16.5113
((((.((((........)))).))))	chr3:197243757-197244098(-)$1	1	297	323	16.9558
..(.(((((........))))).)..	chr19:56152582-56152893(+)$1	1	212	238	16.3082
)(((.((((........)))).)))(	chr8:13099351-13099618(-)$1	1	86	112	16.6926
(((..((((........))))..)))	chr19:878816-879156(-)$1	1	208	234	16.5988
..((((.((........)).)))).)	chr19:879117-879483(-)$1	1	127	153	13.8342
.(((((..(........)..))))).	chr20:43055589-43055863(+)$1	1	112	138	15.7477
(.(((((((........).)))))))	chr16:8936923-8937341(+)$1	1	104	130	14.4132
.(((.((((........)))).))).	chr11:65267957-65268176(+)$1	1	145	171	19.0130
))(((.(((........))).)))((	chr2:241565005-241565287(+)$1	1	125	151	16.3445
((..(((((........)))))...)	chr7:157944170-157944467(-)$1	1	123	149	15.4671
(((.(((((........))))).)))	chr17:41058096-41058357(+)$1	1	75	101	16.2824
.(((.((((........)))).))).	chr11:65268019-65268226(+)$1	1	83	109	19.0130
.(((((.(((........))).))))	chr8:123831774-123832052(+)$1	1	105	131	14.0723
.(((.((((........)))).))).	chr11:65268030-65268233(+)$1	1	72	98	19.0130
.(((.((((........)))).))).	chr11:65267976-65268183(+)$1	1	126	152	19.0130
(..((((((........))).)))..	chr1:146676109-146676353(-)$1	1	102	128	16.7457
.(((.((((........)))).))).	chr11:65268038-65268265(+)$1	1	64	90	19.0130
.(((.((((........)))).))).	chr11:65268026-65268230(+)$1	1	76	102	19.0130
.(((.((((........)))).))).	chr11:65267991-65268201(+)$1	1	111	137	19.0130
..(((((((........)))).))).	chr19:23507354-23507642(-)$1	1	192	218	18.1620
.(((.((((........)))).))).	chr11:65267945-65268157(+)$1	1	157	183	19.0130
.(((.((((........)))).))).	chr11:65267936-65268145(+)$1	1	166	192	19.0130
(((.(((.(........).)))))).	chr16:8926584-8926875(+)$1	1	14	40	15.9616
)((((.(((........)))))))..	chr14:21727245-21727535(-)$1	1	221	247	14.3475
((...((((........))))..)))	chr8:9629646-9629922(+)$1	1	149	175	16.5334
(((((((((........)).))))))	chr11:95982980-95983265(-)$1	1	31	57	15.4932
(((((.(((........))).)))))	chr22:49120642-49120988(+)$1	1	31	57	15.6625
.(((.((((........)))).))).	chr11:65268065-65268269(+)$1	1	37	63	19.0130
.((.((..(........)..)).)).	chr16:52522680-52522940(-)$1	1	101	127	14.0040
((((.((((........))))..)))	chr4:89694038-89694333(-)$1	1	245	271	16.5703

#PSSM
! : 0.28	c : 0.15	d : 0.13	[ : 0.07	e : 0.05	g : 0.03	: : 0.03	# : 0.03	f : 0.03	h : 0.01	= : 0.01	i : 0.01	b : 0.01	D : 0.01	' : 0.01	" : 0.01	
c : 0.40	e : 0.15	d : 0.13	g : 0.03	# : 0.03	f : 0.03	[ : 0.03	! : 0.03	h : 0.01	= : 0.01	i : 0.01	" : 0.01	' : 0.01	b : 0.01	
c : 0.40	e : 0.13	d : 0.11	g : 0.07	! : 0.05	f : 0.03	" : 0.03	h : 0.01	= : 0.01	i : 0.01	# : 0.01	[ : 0.01	a : 0.01	b : 0.01	
c : 0.38	d : 0.11	e : 0.11	[ : 0.09	g : 0.07	! : 0.05	# : 0.03	f : 0.03	" : 0.03	= : 0.01	i : 0.01	
[ : 0.30	e : 0.21	c : 0.13	g : 0.07	d : 0.07	# : 0.03	f : 0.03	b : 0.03	= : 0.01	i : 0.01	! : 0.01	" : 0.01	
d : 0.38	e : 0.19	[ : 0.11	g : 0.07	c : 0.07	# : 0.03	b : 0.03	= : 0.01	i : 0.01	! : 0.01	f : 0.01	
d : 0.36	c : 0.21	e : 0.09	[ : 0.09	g : 0.07	! : 0.05	# : 0.01	= : 0.01	i : 0.01	a : 0.01	f : 0.01	
d : 0.36	c : 0.19	b : 0.15	e : 0.09	[ : 0.05	g : 0.03	! : 0.03	= : 0.01	i : 0.01	f : 0.01	
d : 0.36	c : 0.19	b : 0.15	a : 0.11	e : 0.09	g : 0.03	= : 0.01	i : 0.01	
q : 0.98	c : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.36	c : 0.17	b : 0.15	a : 0.11	e : 0.09	g : 0.03	= : 0.01	i : 0.01	q : 0.01	
d : 0.36	c : 0.19	b : 0.15	e : 0.09	] : 0.05	2 : 0.05	g : 0.03	= : 0.01	i : 0.01	
d : 0.36	c : 0.24	] : 0.09	e : 0.09	2 : 0.07	g : 0.03	3 : 0.01	= : 0.01	i : 0.01	f : 0.01	
d : 0.42	] : 0.13	e : 0.13	g : 0.07	c : 0.07	b : 0.03	3 : 0.01	= : 0.01	i : 0.01	2 : 0.01	a : 0.01	f : 0.01	
] : 0.34	e : 0.21	c : 0.09	g : 0.07	d : 0.07	2 : 0.05	f : 0.03	b : 0.03	3 : 0.01	= : 0.01	i : 0.01	
c : 0.38	e : 0.13	d : 0.09	g : 0.07	2 : 0.07	] : 0.07	3 : 0.03	f : 0.03	h : 0.01	= : 0.01	i : 0.01	4 : 0.01	
c : 0.42	e : 0.15	d : 0.13	g : 0.07	3 : 0.03	f : 0.03	h : 0.01	= : 0.01	i : 0.01	2 : 0.01	4 : 0.01	a : 0.01	b : 0.01	
c : 0.40	e : 0.15	d : 0.07	2 : 0.05	g : 0.03	: : 0.03	3 : 0.03	f : 0.03	] : 0.03	b : 0.03	h : 0.01	= : 0.01	i : 0.01	4 : 0.01	
2 : 0.30	e : 0.11	d : 0.09	c : 0.09	: : 0.07	] : 0.05	g : 0.03	f : 0.03	b : 0.03	h : 0.01	D : 0.01	= : 0.01	i : 0.01	4 : 0.01	B : 0.01	3 : 0.01	

#score	855.7200065156196
#seq	52
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF324PNB_SSB_transcript_m3_run1.txt

#BEAR
[ddddpppppppdddd	chr8:144624224-144624462(+)$1	238	191	207	13.0434
fffffpppppppffff	chr3:57605171-57605397(+)$1	226	93	109	12.6814
[ddddpppppppdddd	chr1:22149953-22150209(-)$1	256	67	83	13.0434
[ddddpppppppdddd	chr2:27273540-27273783(+)$1	243	212	228	13.0434
eeeeepppppppeeee	chr19:33667913-33668145(+)$1	232	98	114	13.8289
eeeeerrrrrrrrree	chr19:2427273-2427488(-)$1	215	31	47	10.2525
eeeeepppppppeeee	chr13:41634804-41635014(-)$1	210	95	111	13.8289
fffffpppppppffff	chr9:137029530-137029741(-)$1	211	146	162	12.6814
fffffpppppppffff	chr16:71792225-71792452(-)$1	227	23	39	12.6814
dddrrrrrrrrrdddd	chr6:27599117-27599335(+)$1	218	92	108	9.8329
fffffpppppppffff	chr17:74557094-74557301(+)$1	207	61	77	12.6814
dddrrrrrrrrrdddd	chr6:27599141-27599364(+)$1	223	68	84	9.8329
ggg[apppppppa]gg	chr19:2427288-2427512(-)$1	224	130	146	12.2544
fffrrrrrrrrrffff	chr6:26988058-26988281(+)$1	223	132	148	9.5455
eeeeerrrrrrrrree	chr5:140098444-140098657(+)$1	213	24	40	10.2525
Dddddpppppppdddd	chr15:79152797-79153015(+)$1	218	198	214	11.8032
[ddddpppppppdddd	chr1:161582399-161582687(+)$1	288	155	171	13.0434
eeeeepppppppeeee	chr7:139025352-139025586(+)$1	234	141	157	13.8289
[ddddpppppppdddd	chr6:27599176-27599396(+)$1	220	171	187	13.0434
dddrrrrrrrrrdddd	chr5:135416115-135416329(-)$1	214	81	97	9.8329
fffffpppppppffff	chr17:74557103-74557330(+)$1	227	52	68	12.6814
dddrrrrrrrrrdddd	chr5:135416145-135416383(-)$1	238	135	151	9.8329
:ddddpppppppdddd	chr16:28883240-28883466(+)$1	226	2	18	11.9512
eeeeepppppppeeee	chr14:20811359-20811561(-)$1	202	50	66	13.8289
gggggpppppppgggg	chr19:24187163-24187408(-)$1	245	128	144	12.4322
dddrrrrrrrrrdddd	chr5:135416132-135416339(-)$1	207	91	107	9.8329
eeeeepppppppeeee	chr20:17943479-17943691(-)$1	212	40	56	13.8289
eeeeepppppppeeee	chr14:20811347-20811550(-)$1	203	39	55	13.8289
eeeeepppppppeeee	chr17:18965274-18965546(+)$1	272	200	216	13.8289
eeeeepppppppeeee	chr7:139025410-139025623(+)$1	213	83	99	13.8289
fffffpppppppffff	chr9:137029505-137029717(-)$1	212	122	138	12.6814
eeeeepppppppeeee	chr15:89878216-89878495(+)$1	279	135	151	13.8289
fffrrrrrrrrrffff	chr6:31499511-31499800(-)$1	289	196	212	9.5455
eeeeepppppppeeee	chr14:20811344-20811547(-)$1	203	36	52	13.8289
eeeeepppppppeeee	chr8:67025493-67025737(+)$1	244	176	192	13.8289
eeeeepppppppeeee	chr5:180618625-180618831(-)$1	206	99	115	13.8289
fffffpppppppffff	chr9:137029517-137029729(-)$1	212	134	150	12.6814
eddddpppppppdddd	chr3:45730453-45730670(-)$1	217	155	171	13.0954
:ddddpppppppdddd	chr19:45981761-45981980(-)$1	219	96	112	11.9512
Fcccrrrrrrrrrccc	chr11:75111343-75111618(+)$1	275	249	265	8.8861
fffffpppppppffff	chr1:173835361-173835582(-)$1	221	18	34	12.6814
eeeeepppppppeeee	chr15:45492498-45492754(-)$1	256	119	135	13.8289
eeeeepppppppeeee	chr17:73029893-73030179(+)$1	286	133	149	13.8289
dd[bbpppppppbb]d	chr16:70571821-70572105(+)$1	284	159	175	11.1816
gggggpppppppgggg	chrX:135961325-135961534(-)$1	209	66	82	12.4322
fffffpppppppffff	chr5:55593304-55593541(-)$1	237	116	132	12.6814
gggggpppppppgggg	chr5:40832670-40832898(-)$1	228	117	133	12.4322
gggggpppppppgggg	chr19:49534839-49535143(-)$1	304	183	199	12.4322
!!cccpppppppccc2	chr20:2443541-2443764(-)$1	223	28	44	11.9338
[ddddpppppppdddd	chr15:79152827-79153041(+)$1	214	168	184	13.0434
eeeeepppppppeeee	chr17:73559156-73559402(+)$1	246	159	175	13.8289
c[cccrrrrrrrrrcc	chr5:109035360-109035588(-)$1	228	131	147	8.9497

#otherMatches

#Seq PSSM
agucgaagagaacgac	chr8:144624224-144624462(+)$1	238	191	207	13.0434
GCCACCUACUUCGUGG	chr3:57605171-57605397(+)$1	226	93	109	12.6814
GUGGCAGUCAACGCCA	chr1:22149953-22150209(-)$1	256	67	83	13.0434
UUUAACCUCAAUUUAA	chr2:27273540-27273783(+)$1	243	212	228	13.0434
cuggguucgaauccca	chr19:33667913-33668145(+)$1	232	98	114	13.8289
GGUGAAAGUGCAGAUC	chr19:2427273-2427488(-)$1	215	31	47	10.2525
ccugguuuucacccag	chr13:41634804-41635014(-)$1	210	95	111	13.8289
GCCACCUACUUCGUGG	chr9:137029530-137029741(-)$1	211	146	162	12.6814
AAGCUAGGCAAAAGUU	chr16:71792225-71792452(-)$1	227	23	39	12.6814
cgcaaucgguuagcgc	chr6:27599117-27599335(+)$1	218	92	108	9.8329
GCUGUUAGUGCUAUGG	chr17:74557094-74557301(+)$1	207	61	77	12.6814
cgcaaucgguuagcgc	chr6:27599141-27599364(+)$1	223	68	84	9.8329
GGGCGACAGGGCCACC	chr19:2427288-2427512(-)$1	224	130	146	12.2544
guugugaguucgagcc	chr6:26988058-26988281(+)$1	223	132	148	9.5455
UUUCUCACCAGUCAAG	chr5:140098444-140098657(+)$1	213	24	40	10.2525
UGACCAACUUCAGGUC	chr15:79152797-79153015(+)$1	218	198	214	11.8032
gcggguucgauucccg	chr1:161582399-161582687(+)$1	288	155	171	13.0434
guggguucgaguccca	chr7:139025352-139025586(+)$1	234	141	157	13.8289
UCUUUAAAGUAAAAAG	chr6:27599176-27599396(+)$1	220	171	187	13.0434
GACUUUCUAUCUGUCC	chr5:135416115-135416329(-)$1	214	81	97	9.8329
GCUGUUAGUGCUAUGG	chr17:74557103-74557330(+)$1	227	52	68	12.6814
GACUUUCUAUCUGUCC	chr5:135416145-135416383(-)$1	238	135	151	9.8329
AGGGACAGUUCAUCCC	chr16:28883240-28883466(+)$1	226	2	18	11.9512
UCCCAUGUCCCUUGGG	chr14:20811359-20811561(-)$1	202	50	66	13.8289
GCAUUGAUGAAGAAUG	chr19:24187163-24187408(-)$1	245	128	144	12.4322
GACUUUCUAUCUGUCC	chr5:135416132-135416339(-)$1	207	91	107	9.8329
UUAAGGCAGUAAUUUA	chr20:17943479-17943691(-)$1	212	40	56	13.8289
UCCCAUGUCCCUUGGG	chr14:20811347-20811550(-)$1	203	39	55	13.8289
GCUCGUAAACUCCGGG	chr17:18965274-18965546(+)$1	272	200	216	13.8289
guggguucgaguccca	chr7:139025410-139025623(+)$1	213	83	99	13.8289
GCCACCUACUUCGUGG	chr9:137029505-137029717(-)$1	212	122	138	12.6814
gcagguucgaguccug	chr15:89878216-89878495(+)$1	279	135	151	13.8289
UGUUUAAUUAAUAUAC	chr6:31499511-31499800(-)$1	289	196	212	9.5455
UCCCAUGUCCCUUGGG	chr14:20811344-20811547(-)$1	203	36	52	13.8289
gcugguucgauuccgg	chr8:67025493-67025737(+)$1	244	176	192	13.8289
cuggucuuguaaacca	chr5:180618625-180618831(-)$1	206	99	115	13.8289
GCCACCUACUUCGUGG	chr9:137029517-137029729(-)$1	212	134	150	12.6814
cuagguucgacuccug	chr3:45730453-45730670(-)$1	217	155	171	13.0954
agugguucaauuccac	chr19:45981761-45981980(-)$1	219	96	112	11.9512
UCCUGUUGGAACAAGG	chr11:75111343-75111618(+)$1	275	249	265	8.8861
UGAGAAUUUUGCUCUC	chr1:173835361-173835582(-)$1	221	18	34	12.6814
cucgguucgaauccga	chr15:45492498-45492754(-)$1	256	119	135	13.8289
cuggccuccuaagcca	chr17:73029893-73030179(+)$1	286	133	149	13.8289
CUUAUGAAUCUGAUCA	chr16:70571821-70572105(+)$1	284	159	175	11.1816
CUGGCAGUACAGGCUG	chrX:135961325-135961534(-)$1	209	66	82	12.4322
GCCACCUACUUCGUGG	chr5:55593304-55593541(-)$1	237	116	132	12.6814
UUCAGCAUUUAACUGA	chr5:40832670-40832898(-)$1	228	117	133	12.4322
ACCGGGUCCACAUUGG	chr19:49534839-49535143(-)$1	304	183	199	12.4322
AGGUGAGGAGCCCAUA	chr20:2443541-2443764(-)$1	223	28	44	11.9338
UGACCAACUUCAGGUC	chr15:79152827-79153041(+)$1	214	168	184	13.0434
GCACAUACACACUGUG	chr17:73559156-73559402(+)$1	246	159	175	13.8289
gcggguguccccuucc	chr5:109035360-109035588(-)$1	228	131	147	8.9497

#DB
.((((.......))))	chr8:144624224-144624462(+)$1	1	191	207	13.0434
(((((.......))))	chr3:57605171-57605397(+)$1	1	93	109	12.6814
.((((.......))))	chr1:22149953-22150209(-)$1	1	67	83	13.0434
.((((.......))))	chr2:27273540-27273783(+)$1	1	212	228	13.0434
(((((.......))))	chr19:33667913-33668145(+)$1	1	98	114	13.8289
(((((.........))	chr19:2427273-2427488(-)$1	1	31	47	10.2525
(((((.......))))	chr13:41634804-41635014(-)$1	1	95	111	13.8289
(((((.......))))	chr9:137029530-137029741(-)$1	1	146	162	12.6814
(((((.......))))	chr16:71792225-71792452(-)$1	1	23	39	12.6814
(((.........))))	chr6:27599117-27599335(+)$1	1	92	108	9.8329
(((((.......))))	chr17:74557094-74557301(+)$1	1	61	77	12.6814
(((.........))))	chr6:27599141-27599364(+)$1	1	68	84	9.8329
(((.(.......).))	chr19:2427288-2427512(-)$1	1	130	146	12.2544
(((.........))))	chr6:26988058-26988281(+)$1	1	132	148	9.5455
(((((.........))	chr5:140098444-140098657(+)$1	1	24	40	10.2525
)((((.......))))	chr15:79152797-79153015(+)$1	1	198	214	11.8032
.((((.......))))	chr1:161582399-161582687(+)$1	1	155	171	13.0434
(((((.......))))	chr7:139025352-139025586(+)$1	1	141	157	13.8289
.((((.......))))	chr6:27599176-27599396(+)$1	1	171	187	13.0434
(((.........))))	chr5:135416115-135416329(-)$1	1	81	97	9.8329
(((((.......))))	chr17:74557103-74557330(+)$1	1	52	68	12.6814
(((.........))))	chr5:135416145-135416383(-)$1	1	135	151	9.8329
.((((.......))))	chr16:28883240-28883466(+)$1	1	2	18	11.9512
(((((.......))))	chr14:20811359-20811561(-)$1	1	50	66	13.8289
(((((.......))))	chr19:24187163-24187408(-)$1	1	128	144	12.4322
(((.........))))	chr5:135416132-135416339(-)$1	1	91	107	9.8329
(((((.......))))	chr20:17943479-17943691(-)$1	1	40	56	13.8289
(((((.......))))	chr14:20811347-20811550(-)$1	1	39	55	13.8289
(((((.......))))	chr17:18965274-18965546(+)$1	1	200	216	13.8289
(((((.......))))	chr7:139025410-139025623(+)$1	1	83	99	13.8289
(((((.......))))	chr9:137029505-137029717(-)$1	1	122	138	12.6814
(((((.......))))	chr15:89878216-89878495(+)$1	1	135	151	13.8289
(((.........))))	chr6:31499511-31499800(-)$1	1	196	212	9.5455
(((((.......))))	chr14:20811344-20811547(-)$1	1	36	52	13.8289
(((((.......))))	chr8:67025493-67025737(+)$1	1	176	192	13.8289
(((((.......))))	chr5:180618625-180618831(-)$1	1	99	115	13.8289
(((((.......))))	chr9:137029517-137029729(-)$1	1	134	150	12.6814
)((((.......))))	chr3:45730453-45730670(-)$1	1	155	171	13.0954
.((((.......))))	chr19:45981761-45981980(-)$1	1	96	112	11.9512
)(((.........)))	chr11:75111343-75111618(+)$1	1	249	265	8.8861
(((((.......))))	chr1:173835361-173835582(-)$1	1	18	34	12.6814
(((((.......))))	chr15:45492498-45492754(-)$1	1	119	135	13.8289
(((((.......))))	chr17:73029893-73030179(+)$1	1	133	149	13.8289
((.((.......)).)	chr16:70571821-70572105(+)$1	1	159	175	11.1816
(((((.......))))	chrX:135961325-135961534(-)$1	1	66	82	12.4322
(((((.......))))	chr5:55593304-55593541(-)$1	1	116	132	12.6814
(((((.......))))	chr5:40832670-40832898(-)$1	1	117	133	12.4322
(((((.......))))	chr19:49534839-49535143(-)$1	1	183	199	12.4322
..(((.......))).	chr20:2443541-2443764(-)$1	1	28	44	11.9338
.((((.......))))	chr15:79152827-79153041(+)$1	1	168	184	13.0434
(((((.......))))	chr17:73559156-73559402(+)$1	1	159	175	13.8289
(.(((.........))	chr5:109035360-109035588(-)$1	1	131	147	8.9497

#PSSM
e : 0.34	f : 0.21	[ : 0.11	d : 0.11	g : 0.09	: : 0.03	D : 0.01	F : 0.01	! : 0.01	c : 0.01	
e : 0.32	d : 0.30	f : 0.21	g : 0.09	c : 0.01	! : 0.01	[ : 0.01	
e : 0.32	d : 0.28	f : 0.21	g : 0.09	c : 0.05	[ : 0.01	
e : 0.32	d : 0.19	f : 0.17	r : 0.13	g : 0.07	c : 0.05	[ : 0.01	b : 0.01	
e : 0.32	d : 0.19	f : 0.17	r : 0.15	g : 0.07	c : 0.03	a : 0.01	b : 0.01	
p : 0.78	r : 0.21	
p : 0.78	r : 0.21	
p : 0.78	r : 0.21	
p : 0.78	r : 0.21	
p : 0.78	r : 0.21	
p : 0.78	r : 0.21	
p : 0.78	r : 0.21	
d : 0.28	e : 0.28	f : 0.21	r : 0.07	g : 0.07	a : 0.01	b : 0.01	c : 0.01	
d : 0.28	e : 0.28	f : 0.21	g : 0.07	r : 0.05	c : 0.03	] : 0.01	b : 0.01	
e : 0.32	d : 0.28	f : 0.21	g : 0.09	c : 0.05	] : 0.01	
e : 0.32	d : 0.30	f : 0.21	g : 0.09	c : 0.03	2 : 0.01	

#score	640.3247982853117
#seq	52
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF538ZHY_LSM11_CDS_m1_run2.txt

#BEAR
gggggg]bbggggggg!!cccqqqqqqqqcccggggggg	chr17:46628023-46628315(+)$1	292	162	201	9.4791
ddd[a[bb####a[ccc"""cccmmmmccc333ccc]a5	chr19:10407083-10407366(+)$1	283	107	146	12.1692
!hhhhhhhhffffffbb####cccmmmmccc22bb]fff	chr5:10261727-10261958(+)$1	231	118	157	10.7097
c[dddd!!cccccc"""cccbblllbb]ccc22ccc]cc	chr22:50685256-50685507(-)$1	251	200	239	11.8673
ccc"""dddd####eeeee!!cccmmmmccc22eeeeed	chrX:48652237-48652505(+)$1	268	158	197	11.7042
dd[hhhhhhhhbbccc[a[cccooooooccc]accc]bb	chr22:19711584-19711816(+)$1	232	149	188	12.4625
gggggggggggeeeee"""cccooooooccc22eeeee8	chr19:2270329-2270593(+)$1	264	186	225	16.3342
mccc============[assssssssssa]=========	chr14:21966248-21966508(-)$1	260	112	151	9.6560
=========[ffffff!!bbddddmmmmdddd333bb22	chr9:140005006-140005300(-)$1	294	176	215	11.0822
dddccc"""bb[eeeee[eeeeemmmmeeeee]eeeee]	chr16:31202251-31202498(+)$1	247	126	165	9.8759
d[dddd!!dddd[dddd[ccc!!bbmmmmbb22ccc333	chr17:37009226-37009434(-)$1	208	132	171	11.3124
gggggg[dddd[dddd!!cccpppppppccc22dddd22	chr17:7127405-7127660(+)$1	255	180	219	10.1892
ggggggg[ffffffbb"""cccooooooccc55555bb4	chr7:2577886-2578141(-)$1	255	40	79	10.6525
d!!ccc!!ggggggg[cccrrrrrrrrrccc]ggggggg	chr18:9337145-9337454(+)$1	309	227	266	11.8768
D:::bb!!ccc!!dddd!!cccooooooccc]dddd]cc	chr1:156109470-156109770(+)$1	300	227	266	9.9385
CCeeeee[bb[eeeee[dddd[ccclllccc333dddd]	chr19:2272586-2272821(+)$1	235	135	174	10.1253
=======####eeeee####cccnnnnnccc55555eee	chr1:52254948-52255202(-)$1	254	67	106	10.1437
cc===========dddddddd[bbmmmmbb333dddd]d	chr6:33383629-33383934(+)$1	305	216	255	11.4995
[eeeee[ccc[eeeee[ffffffmmmmffffffeeeeec	chr14:102515941-102516215(+)$1	274	140	179	9.1409
!!dddd!!dddd[ddddeeeeeooooooeeeee]dddd4	chr16:89006630-89006920(-)$1	290	108	147	11.0895
=========="""eeeee[cccmmmmccceeeee=====	chr16:18794305-18794533(-)$1	228	4	43	11.1859
ccc22eeeeeffffff"""cccooooooccc333fffff	chr12:117476878-117477187(-)$1	309	38	77	13.7281
"""ggggggg!!dddd[aeeeeellleeeee4444a]dd	chr8:145617871-145618139(+)$1	268	182	221	11.0643
bdddd[bb!!dddd[a!!bbaooooooa]bb22a]dddd	chr11:294058-294295(+)$1	237	36	75	12.5170
e[eeeee[bb!!ccc"""a[bboooooobb]a333ccc2	chr6:33259695-33260047(-)$1	352	121	160	13.3381
FFdddd!!hhhhhhhh!!ddddoooooodddd333hhhh	chr11:67379598-67379837(+)$1	239	189	228	11.0799
ffffff[ggggggg$$$$$ddddmmmmdddd22gggggg	chr17:79993818-79994098(-)$1	280	91	130	11.1429
=========ccc[bb[eeeee!!bbmmmmbb22eeeeeb	chr20:60884671-60884893(-)$1	222	59	98	10.0524
ggggggg"""ddddvvvvvvvvvvvvvdddd333ggggg	chr16:242827-243088(-)$1	261	211	250	9.8893
]ddddiiiiiiiiidddd[ccclllccc]dddd]iiiii	chr16:722617-722845(+)$1	228	66	105	9.9657
cc!!iiiiiiiii[a[a[ddddoooooodddd]aaiiii	chr11:67817869-67818147(+)$1	278	135	174	13.8603
ffccc[ccc[eeeee[a!!bbqqqqqqqqbb22aeeeee	chr19:798402-798726(+)$1	324	233	272	10.1617
ggggg[ggggggg[a[bb[cccooooooccc]bb]a22g	chr19:18547582-18547850(-)$1	268	113	152	13.5660
"ddddggggggg[ccc####cccbbmmmmbb]ccc4444	chr17:76109122-76109396(-)$1	274	95	134	10.8710
:ggggggg$$$$$ccc"""cccnnnnnccc333ccc333	chr17:80850926-80851219(+)$1	293	166	205	12.2825
iiiiiiii::==========[cccmmmmccc]=======	chrM:14366-14575(-)$1	209	65	104	11.6153
dddlllddddeeeee[dddd[aooooooa]ddddeeeee	chr22:50016766-50017051(-)$1	285	11	50	9.4445
deeeee22dddddddd"""cccooooooccc22dddddd	chr17:80445688-80445951(+)$1	263	158	197	13.6929
cc!!cccddddffffff!!cccooooooccc22ffffff	chr22:50873283-50873574(+)$1	291	161	200	13.9002
hhhhhhhh!!dddd"""cccqqqqqqqqccc22dddd22	chr16:2871466-2871726(+)$1	260	197	236	9.9005
gggggg$$$$$eeeee[ccc[accclllccc]a]cccee	chr19:18546275-18546521(-)$1	246	163	202	11.8250
===$$$$$ccceeeee!!eeeeellleeeee22eeeee2	chr7:934872-935120(+)$1	248	94	133	10.8165
fffffffff####ccc[cccddddllldddd22ccc]cc	chr1:32827583-32827856(-)$1	273	49	88	11.0946
eeea[eeeee[dddd[bb[cccooooooccc22bb]ddd	chrM:14222-14443(-)$1	221	65	104	13.6151
eeea[eeeee[dddd[bb[cccooooooccc22bb]ddd	chrM:14201-14422(-)$1	221	44	83	13.6151
fdddd!!ffffff!!bb!!cccooooooccc22bbffff	chr9:140005231-140005477(-)$1	246	160	199	13.6948
%ccc"""cccdddd"""ccc[annnnna]ccc333dddd	chr16:67862465-67862731(-)$1	266	99	138	11.1167
iiiiiiiabb[eeeee!!ffffffmmmmffffffeeeee	chr7:933374-933640(+)$1	266	193	232	10.1911
!dddd"""a[a[eeeee!!ddddmmmmdddd22eeeee]	chr19:49611416-49611734(+)$1	318	231	270	12.6928
ggggggg[bb[ccc"""gggggggmmmmggggggg]ccc	chr16:31202614-31202843(+)$1	229	130	169	10.8442
hhh!!cccaeeeee[cccbb[cccmmmmccc]bb]ccc]	chr22:20100593-20100847(-)$1	254	61	100	10.4687
eeeeeiiiiiiiii[ddddrrrrrrrrrdddd]iiiiii	chr16:778841-779078(+)$1	237	56	95	10.4567
d[dddd!!dddd[dddd[ccc!!bbmmmmbb22ccc333	chr17:37009220-37009424(-)$1	204	122	161	11.3124
dddggggggg!!bb[ccca!!cccmmmmccc22a]cccb	chr17:79526315-79526540(-)$1	225	177	216	12.8859

#otherMatches

#Seq PSSM
AUGGGCUGCGGGGGGCUGCCGGCUGGAGAUGGGCCCCCC	chr17:46628023-46628315(+)$1	292	162	201	9.4791
ggcggggcggcaggcgcggagggcggacccgaggcggcg	chr19:10407083-10407366(+)$1	283	107	146	12.1692
GGAAAUAAGAUGGUGAGAAUUCAACUAUUUGUCCUAUAC	chr5:10261727-10261958(+)$1	231	118	157	10.7097
AGAGGUAAGCCUCACUUGGCCAUCCUGAGCCUCUGACGG	chr22:50685256-50685507(-)$1	251	200	239	11.8673
GCCCCCCAGGUACUGCCCAUCUCUACCAAGGCCUGGGCC	chrX:48652237-48652505(+)$1	268	158	197	11.7042
CGCUGCGCGGCCGCCUGCUGCCCUAUCUGGCCGAGGACG	chr22:19711584-19711816(+)$1	232	149	188	12.4625
GAGCUGGGGGUGGCGCACUCCGACAGCCCGGCAGCGCCC	chr19:2270329-2270593(+)$1	264	186	225	16.3342
CUUCCUUACAGAGCUAAGAAUCCAUAGCCAUGGCUCUGU	chr14:21966248-21966508(-)$1	260	112	151	9.6560
UGGGGGGCCCAGACUCAGCCUCUGAGCACAGGACUGGAG	chr9:140005006-140005300(-)$1	294	176	215	11.0822
GGGCCGGGGUGGUGGGGACAGAGGUGGCUUUGGCCCUGG	chr16:31202251-31202498(+)$1	247	126	165	9.8759
GCUGUAAUCAAUUGUGCUGACAACACAGGUGAGGUCUUU	chr17:37009226-37009434(-)$1	208	132	171	11.3124
GGAGGGCAGGGUGGUGUAUGGCAACUAACCAGUCAUUCU	chr17:7127405-7127660(+)$1	255	180	219	10.1892
GAGGCACUGAGGGCUCUCUGCCACGUGGGGCUCUUUGAC	chr7:2577886-2578141(-)$1	255	40	79	10.6525
UAAUAUCAAAAUAUAUUGUAGAGCAGAAACAUUAUGUUU	chr18:9337145-9337454(+)$1	309	227	266	11.8768
GAGAGGGAGGUCACUGGAAAGGGGAGAGCCUGCUGGCAC	chr1:156109470-156109770(+)$1	300	227	266	9.9385
CACUCGCUGCAGCUUUGCAGUUCUCCUGGAGUUCGCUGA	chr19:2272586-2272821(+)$1	235	135	174	10.1253
UUUUUCACUUUUGUCUUUGUCCUCUUUCAGGUUGUUGGA	chr1:52254948-52255202(-)$1	254	67	106	10.1437
GUUGAGUGGGGAGGAGGGGGCAUCUUCUGAACAGCCUGC	chr6:33383629-33383934(+)$1	305	216	255	11.4995
UGCCUGAGGCGUACAUCACUGCCACCAGGCAGUAUGUGG	chr14:102515941-102516215(+)$1	274	140	179	9.1409
GGAGGGAGGUGUGAGCCUCUGUGGAGGGACAGAUGGCUG	chr16:89006630-89006920(-)$1	290	108	147	11.0895
CAGGAAAGCGCCCUUAACCACUGAUGAGUGUUGAUGUUU	chr16:18794305-18794533(-)$1	228	4	43	11.1859
CUGGUUUUCACCUGCCUGGAACAUCACAGUUGGUGGCAG	chr12:117476878-117477187(-)$1	309	38	77	13.7281
CCUGCGCCACGCCAAGGUCGUCUGGGAGAUGCUCAAGUU	chr8:145617871-145618139(+)$1	268	182	221	11.0643
GCAGGUGUGGACGGAGAAUGCAGACGGGUCAGGCGCUGU	chr11:294058-294295(+)$1	237	36	75	12.5170
CCCAGGAUCAAGGCCACAGGGAGGAAGAUUGCACGGGCA	chr6:33259695-33260047(-)$1	352	121	160	13.3381
AGGGUGUUGGGGGAUUUUUGGACUCUGUUUCACAUGGUC	chr11:67379598-67379837(+)$1	239	189	228	11.0799
AGGGGUGGGAGGGAAAGAUGGGCGGCAGCCUCCUUCCUC	chr17:79993818-79994098(-)$1	280	91	130	11.1429
UGGGCCCCUUGCUGGCGGCUGCAGCUGGUGCCCCAGCCC	chr20:60884671-60884893(-)$1	222	59	98	10.0524
CCCUGCUCGGUCCAUUCCACUGUUGCUUGGAAUAGGCAG	chr16:242827-243088(-)$1	261	211	250	9.8893
AGGCCGCUGUCUGUCCCAGCUCUGUGAGGUGGGCACAGA	chr16:722617-722845(+)$1	228	66	105	9.9657
GCCGGGAGGUGGGCGUGGCGGCUGUGGUGCUGGUCCCCA	chr11:67817869-67818147(+)$1	278	135	174	13.8603
GCAGGAGGCCCGGAGGCUGCCCUUCCGACGGACGCUCCG	chr19:798402-798726(+)$1	324	233	272	10.1617
UCUGGAGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAG	chr19:18547582-18547850(-)$1	268	113	152	13.5660
UUCUGGCAGGGUUGGGACAACCGAGGAGGCUGCGGCACC	chr17:76109122-76109396(-)$1	274	95	134	10.8710
UGAGACCUGAAGACCGUUUACGGUGUAUGUUUUCGGGAA	chr17:80850926-80851219(+)$1	293	166	205	12.2825
UUUUUUAAUUUAUUUAGGGGGAAUGAUGGUUGUCUUUGG	chrM:14366-14575(-)$1	209	65	104	11.6153
AGGGCCCCUGGGUUACUGGCAGGUCCGUCAGCCAUAGCC	chr22:50016766-50017051(-)$1	285	11	50	9.4445
CCUGCUGCGGCAGAUGGAAGGCAUUUACGCUGACAUCCC	chr17:80445688-80445951(+)$1	263	158	197	13.6929
CCAACGCGGUGGUGCAGAACCUGGAGCGGGGCCCUGUGC	chr22:50873283-50873574(+)$1	291	161	200	13.9002
UGUCUUGUUUGGUAAUAAACACAUUCCAGUUGAUGCCUU	chr16:2871466-2871726(+)$1	260	197	236	9.9005
CAGGGGCUGCUAUGGGAGGCAGGGCUUGGCCACCGCCCC	chr19:18546275-18546521(-)$1	246	163	202	11.8250
CCAGGGAACCUUCUGACCAGCCUCAUGGGCUCCUCAGAG	chr7:934872-935120(+)$1	248	94	133	10.8165
CCAGUCCCCGAUUCUGGCCCGCGCUGAGUGCCAGGGGCG	chr1:32827583-32827856(-)$1	273	49	88	11.0946
GGUAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGU	chrM:14222-14443(-)$1	221	65	104	13.6151
GGUAGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGU	chrM:14201-14422(-)$1	221	44	83	13.6151
GGCCUGGCGGUGGUCGCGGGUCGGGCGGGACAGGCUCAC	chr9:140005231-140005477(-)$1	246	160	199	13.6948
ACUCUUUAGCUUCUAUGCCAAGAUGCCCAUGGAGAGGAA	chr16:67862465-67862731(-)$1	266	99	138	11.1167
CGUCCCGCCCAAGCAGACGUCUUCCUACGGGGGCCUGCU	chr7:933374-933640(+)$1	266	193	232	10.1911
ACGGCUACCUGGCUCCGGAGAAUGGGUAUUUGAUGGAGG	chr19:49611416-49611734(+)$1	318	231	270	12.6928
GAGAGGCCGUAUUAAUUAGCCUGGCUCCCCAGGUUCUGG	chr16:31202614-31202843(+)$1	229	130	169	10.8442
UCUGACAGGCCACGGUGCCAUCUCUUCAGAGUUGAGUAA	chr22:20100593-20100847(-)$1	254	61	100	10.4687
ACGGCCCCUUUCCCGCCGCGGCAAGAGGGUGGGGGGGGA	chr16:778841-779078(+)$1	237	56	95	10.4567
GCUGUAAUCAAUUGUGCUGACAACACAGGUGAGGUCUUU	chr17:37009220-37009424(-)$1	204	122	161	11.3124
GUGGGCCUGUCAGCACUGCACGUUCAUGAACCAGCCAGG	chr17:79526315-79526540(-)$1	225	177	216	12.8859

#DB
)))))).))(((((((..(((........))))))))))	chr17:46628023-46628315(+)$1	1	162	201	9.4791
(((.(.((....(.(((...(((....)))...))).).	chr19:10407083-10407366(+)$1	1	107	146	12.1692
.((((((((((((((((....(((....)))..)).)))	chr5:10261727-10261958(+)$1	1	118	157	10.7097
(.((((..((((((...(((((...)).)))..))).))	chr22:50685256-50685507(-)$1	1	200	239	11.8673
(((...((((....(((((..(((....)))..))))))	chrX:48652237-48652505(+)$1	1	158	197	11.7042
((.(((((((((((((.(.(((......))).)))).))	chr22:19711584-19711816(+)$1	1	149	188	12.4625
((((((((((((((((...(((......)))..))))).	chr19:2270329-2270593(+)$1	1	186	225	16.3342
.)))((((((((((((.(..........).)))))))))	chr14:21966248-21966508(-)$1	1	112	151	9.6560
(((((((((.((((((..((((((....))))...))..	chr9:140005006-140005300(-)$1	1	176	215	11.0822
((((((...((.(((((.(((((....))))).))))).	chr16:31202251-31202498(+)$1	1	126	165	9.8759
(.((((..((((.((((.(((..((....))..)))...	chr17:37009226-37009434(-)$1	1	132	171	11.3124
((((((.((((.((((..(((.......)))..))))..	chr17:7127405-7127660(+)$1	1	180	219	10.1892
(((((((.((((((((...(((......))).....)).	chr7:2577886-2578141(-)$1	1	40	79	10.6525
(..(((..(((((((.(((.........))).)))))))	chr18:9337145-9337454(+)$1	1	227	266	11.8768
)...((..(((..((((..(((......))).)))).))	chr1:156109470-156109770(+)$1	1	227	266	9.9385
))(((((.((.(((((.((((.(((...)))...)))).	chr19:2272586-2272821(+)$1	1	135	174	10.1253
(((((((....(((((....(((.....))).....)))	chr1:52254948-52255202(-)$1	1	67	106	10.1437
(((((((((((((((((((((.((....))...)))).)	chr6:33383629-33383934(+)$1	1	216	255	11.4995
.(((((.(((.(((((.((((((....))))))))))))	chr14:102515941-102516215(+)$1	1	140	179	9.1409
..((((..((((.(((((((((......))))).)))).	chr16:89006630-89006920(-)$1	1	108	147	11.0895
((((((((((...(((((.(((....)))))))))))))	chr16:18794305-18794533(-)$1	1	4	43	11.1859
)))..)))))((((((...(((......)))...)))))	chr12:117476878-117477187(-)$1	1	38	77	13.7281
...(((((((..((((.((((((...)))))....).))	chr8:145617871-145618139(+)$1	1	182	221	11.0643
(((((.((..((((.(..(((......).))..).))))	chr11:294058-294295(+)$1	1	36	75	12.5170
(.(((((.((..(((...(.((......)).)...))).	chr6:33259695-33260047(-)$1	1	121	160	13.3381
))((((..((((((((..((((......))))...))))	chr11:67379598-67379837(+)$1	1	189	228	11.0799
((((((.(((((((.....((((....))))..))))))	chr17:79993818-79994098(-)$1	1	91	130	11.1429
((((((((((((.((.(((((..((....))..))))))	chr20:60884671-60884893(-)$1	1	59	98	10.0524
(((((((...((((.............))))...)))))	chr16:242827-243088(-)$1	1	211	250	9.8893
.))))(((((((((((((.(((...))).)))).)))))	chr16:722617-722845(+)$1	1	66	105	9.9657
((..(((((((((.(.(.((((......)))).))))))	chr11:67817869-67818147(+)$1	1	135	174	13.8603
(((((.(((.(((((.(..((........))..))))))	chr19:798402-798726(+)$1	1	233	272	10.1617
(((((.(((((((.(.((.(((......))).)).)..)	chr19:18547582-18547850(-)$1	1	113	152	13.5660
.(((((((((((.(((....(((((....)).)))....	chr17:76109122-76109396(-)$1	1	95	134	10.8710
.(((((((.....(((...(((.....)))...)))...	chr17:80850926-80851219(+)$1	1	166	205	12.2825
))))))))..((((((((((.(((....))).)))))))	chrM:14366-14575(-)$1	1	65	104	11.6153
(((...))))(((((.((((.(......).)))))))))	chr22:50016766-50017051(-)$1	1	11	50	9.4445
))))))..))))((((...(((......)))..))))((	chr17:80445688-80445951(+)$1	1	158	197	13.6929
((..(((((((((((((..(((......)))..))))))	chr22:50873283-50873574(+)$1	1	161	200	13.9002
((((((((..((((...(((........)))..))))..	chr16:2871466-2871726(+)$1	1	197	236	9.9005
((((((.....(((((.(((.((((...))).).)))))	chr19:18546275-18546521(-)$1	1	163	202	11.8250
(((.....((((((((..(((((...)))))..))))).	chr7:934872-935120(+)$1	1	94	133	10.8165
(((((((((....(((.(((((((...))))..))).))	chr1:32827583-32827856(-)$1	1	49	88	11.0946
((((.(((((.((((.((.(((......)))..)).)))	chrM:14222-14443(-)$1	1	65	104	13.6151
((((.(((((.((((.((.(((......)))..)).)))	chrM:14201-14422(-)$1	1	44	83	13.6151
)((((..((((((..((..(((......)))..))))))	chr9:140005231-140005477(-)$1	1	160	199	13.6948
.(((...(((((((...(((.(.....).)))...))))	chr16:67862465-67862731(-)$1	1	99	138	11.1167
((((((((((.(((((..((((((....)))))))))))	chr7:933374-933640(+)$1	1	193	232	10.1911
.((((...(.(.(((((..((((....))))..))))).	chr19:49611416-49611734(+)$1	1	231	270	12.6928
(((((((.((.(((...(((((((....))))))).)))	chr16:31202614-31202843(+)$1	1	130	169	10.8442
(((..(((((((((.(((((.(((....))).)).))).	chr22:20100593-20100847(-)$1	1	61	100	10.4687
)))))(((((((((.((((.........)))).))))))	chr16:778841-779078(+)$1	1	56	95	10.4567
(.((((..((((.((((.(((..((....))..)))...	chr17:37009220-37009424(-)$1	1	122	161	11.3124
)))(((((((..((.((((..(((....)))..).))))	chr17:79526315-79526540(-)$1	1	177	216	12.8859

#PSSM
d : 0.16	g : 0.14	c : 0.11	= : 0.09	e : 0.07	f : 0.07	! : 0.05	" : 0.03	i : 0.03	h : 0.03	m : 0.01	D : 0.01	C : 0.01	[ : 0.01	b : 0.01	F : 0.01	] : 0.01	: : 0.01	% : 0.01	
d : 0.18	g : 0.16	c : 0.12	= : 0.09	e : 0.09	[ : 0.07	h : 0.05	f : 0.05	! : 0.03	i : 0.03	: : 0.01	C : 0.01	" : 0.01	F : 0.01	
d : 0.25	g : 0.16	e : 0.12	= : 0.11	c : 0.09	h : 0.05	! : 0.05	f : 0.03	i : 0.03	[ : 0.01	: : 0.01	" : 0.01	
g : 0.20	d : 0.18	c : 0.09	= : 0.09	e : 0.09	h : 0.05	! : 0.05	f : 0.03	i : 0.03	a : 0.03	[ : 0.01	" : 0.01	: : 0.01	2 : 0.01	l : 0.01	$ : 0.01	
g : 0.20	d : 0.18	= : 0.11	e : 0.09	c : 0.07	h : 0.05	i : 0.05	" : 0.03	f : 0.03	[ : 0.03	a : 0.01	b : 0.01	2 : 0.01	l : 0.01	$ : 0.01	! : 0.01	
g : 0.20	e : 0.12	= : 0.11	d : 0.09	i : 0.09	[ : 0.07	c : 0.07	h : 0.05	" : 0.05	f : 0.03	b : 0.01	l : 0.01	$ : 0.01	! : 0.01	
g : 0.16	! : 0.14	= : 0.11	e : 0.09	i : 0.09	h : 0.05	" : 0.05	[ : 0.05	c : 0.05	b : 0.03	d : 0.03	$ : 0.03	] : 0.01	2 : 0.01	f : 0.01	
! : 0.12	g : 0.12	= : 0.09	d : 0.07	[ : 0.07	c : 0.07	i : 0.07	b : 0.05	h : 0.05	" : 0.05	e : 0.05	$ : 0.03	f : 0.03	# : 0.01	2 : 0.01	a : 0.01	
d : 0.14	g : 0.12	c : 0.11	b : 0.09	= : 0.09	h : 0.05	f : 0.05	e : 0.05	i : 0.05	# : 0.03	" : 0.03	! : 0.03	$ : 0.03	a : 0.03	: : 0.01	
g : 0.14	d : 0.14	c : 0.11	b : 0.09	e : 0.07	# : 0.05	f : 0.05	= : 0.05	[ : 0.05	i : 0.05	h : 0.03	! : 0.03	$ : 0.03	" : 0.01	: : 0.01	
d : 0.18	g : 0.11	[ : 0.11	f : 0.09	# : 0.07	c : 0.07	= : 0.05	! : 0.05	i : 0.05	e : 0.05	h : 0.03	$ : 0.03	b : 0.01	" : 0.01	a : 0.01	
e : 0.18	d : 0.18	f : 0.11	g : 0.09	! : 0.07	# : 0.05	c : 0.05	= : 0.05	[ : 0.05	i : 0.05	b : 0.01	" : 0.01	h : 0.01	$ : 0.01	
e : 0.22	d : 0.16	f : 0.11	[ : 0.09	g : 0.07	c : 0.05	= : 0.05	i : 0.05	# : 0.03	b : 0.03	a : 0.01	! : 0.01	" : 0.01	h : 0.01	$ : 0.01	
d : 0.25	e : 0.24	c : 0.12	f : 0.09	g : 0.05	[ : 0.05	= : 0.03	b : 0.03	i : 0.03	# : 0.01	h : 0.01	! : 0.01	
e : 0.24	d : 0.20	c : 0.11	f : 0.07	" : 0.07	[ : 0.07	g : 0.03	= : 0.03	b : 0.03	a : 0.03	h : 0.01	$ : 0.01	v : 0.01	! : 0.01	
e : 0.20	d : 0.18	[ : 0.14	c : 0.12	" : 0.09	b : 0.05	f : 0.05	= : 0.03	g : 0.01	a : 0.01	h : 0.01	$ : 0.01	v : 0.01	
" : 0.18	d : 0.14	! : 0.12	[ : 0.12	b : 0.09	e : 0.09	c : 0.07	# : 0.03	a : 0.03	$ : 0.01	v : 0.01	= : 0.01	f : 0.01	
! : 0.22	c : 0.14	" : 0.12	d : 0.09	e : 0.07	[ : 0.07	# : 0.05	a : 0.05	b : 0.05	f : 0.01	$ : 0.01	v : 0.01	= : 0.01	g : 0.01	
c : 0.18	" : 0.11	e : 0.11	[ : 0.11	d : 0.11	! : 0.09	# : 0.05	b : 0.05	f : 0.03	a : 0.03	s : 0.01	$ : 0.01	v : 0.01	= : 0.01	g : 0.01	
c : 0.42	d : 0.12	e : 0.09	b : 0.07	# : 0.05	! : 0.03	r : 0.03	f : 0.03	" : 0.01	s : 0.01	[ : 0.01	v : 0.01	= : 0.01	g : 0.01	
c : 0.38	d : 0.14	e : 0.09	[ : 0.09	b : 0.05	! : 0.03	r : 0.03	f : 0.03	# : 0.01	s : 0.01	a : 0.01	v : 0.01	q : 0.01	g : 0.01	
c : 0.40	d : 0.11	e : 0.07	q : 0.05	! : 0.05	a : 0.05	b : 0.03	r : 0.03	[ : 0.03	f : 0.03	s : 0.01	p : 0.01	o : 0.01	v : 0.01	g : 0.01	
o : 0.31	c : 0.18	d : 0.07	q : 0.05	e : 0.05	! : 0.05	l : 0.03	r : 0.03	f : 0.03	n : 0.03	s : 0.01	p : 0.01	b : 0.01	m : 0.01	v : 0.01	g : 0.01	
o : 0.31	c : 0.12	m : 0.11	b : 0.09	l : 0.07	q : 0.05	n : 0.05	d : 0.03	r : 0.03	s : 0.01	p : 0.01	v : 0.01	f : 0.01	g : 0.01	
o : 0.31	m : 0.27	l : 0.09	b : 0.07	q : 0.05	n : 0.05	r : 0.03	c : 0.03	s : 0.01	p : 0.01	v : 0.01	
m : 0.35	o : 0.31	l : 0.09	q : 0.05	n : 0.05	r : 0.03	b : 0.01	s : 0.01	p : 0.01	v : 0.01	c : 0.01	
m : 0.33	o : 0.31	q : 0.05	l : 0.05	n : 0.05	r : 0.03	c : 0.03	e : 0.03	b : 0.01	s : 0.01	p : 0.01	v : 0.01	
o : 0.29	m : 0.24	c : 0.07	d : 0.07	q : 0.05	e : 0.05	r : 0.03	l : 0.03	a : 0.03	] : 0.01	s : 0.01	p : 0.01	n : 0.01	f : 0.01	
c : 0.48	d : 0.14	e : 0.07	m : 0.07	] : 0.05	q : 0.03	a : 0.03	b : 0.03	f : 0.03	g : 0.01	
c : 0.49	d : 0.16	b : 0.14	e : 0.09	] : 0.03	f : 0.03	g : 0.01	
c : 0.46	d : 0.18	b : 0.11	e : 0.09	3 : 0.05	f : 0.03	= : 0.01	] : 0.01	g : 0.01	
2 : 0.38	] : 0.14	3 : 0.11	d : 0.11	e : 0.05	c : 0.03	5 : 0.03	f : 0.03	= : 0.01	4 : 0.01	a : 0.01	g : 0.01	
2 : 0.38	3 : 0.18	g : 0.05	] : 0.05	d : 0.05	a : 0.03	= : 0.03	5 : 0.03	f : 0.03	e : 0.03	b : 0.03	4 : 0.01	c : 0.01	
c : 0.14	e : 0.14	3 : 0.12	b : 0.11	d : 0.11	g : 0.07	a : 0.07	] : 0.05	= : 0.03	5 : 0.03	f : 0.03	4 : 0.01	i : 0.01	
e : 0.18	c : 0.16	d : 0.12	g : 0.09	b : 0.07	3 : 0.07	] : 0.07	= : 0.05	5 : 0.03	f : 0.03	i : 0.03	4 : 0.01	a : 0.01	
c : 0.20	e : 0.18	d : 0.16	g : 0.07	] : 0.07	= : 0.05	f : 0.05	i : 0.05	5 : 0.03	a : 0.03	b : 0.01	h : 0.01	4 : 0.01	
e : 0.20	d : 0.18	] : 0.11	c : 0.09	g : 0.07	f : 0.07	= : 0.05	3 : 0.05	i : 0.05	b : 0.03	h : 0.01	2 : 0.01	4 : 0.01	
e : 0.22	d : 0.14	c : 0.12	g : 0.07	f : 0.07	2 : 0.07	= : 0.05	3 : 0.05	i : 0.05	b : 0.03	a : 0.01	] : 0.01	h : 0.01	4 : 0.01	
d : 0.14	g : 0.09	c : 0.09	2 : 0.09	e : 0.09	f : 0.07	] : 0.07	b : 0.05	= : 0.05	3 : 0.05	4 : 0.05	i : 0.05	5 : 0.01	8 : 0.01	h : 0.01	

#score	619.199390618396
#seq	54
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF821EXR_HNRNPUL1_transcript_m1_run1.txt

#BEAR
gggggg[eeeee!!eeeeellleeeee333eeeeegggg	chr1:2201793-2202103(+)$1	310	118	157	16.2454
========$$$$$ccc[cccoooooocccccc=======	chr22:49995123-49995387(-)$1	264	221	260	13.7761
ccciiiiiiiii[eeeeeooooooeeeeeiiiiiiiii7	chr16:31199378-31199623(+)$1	245	4	43	16.1986
ccc[dddd[a"""eeeee"""===========!!eeeee	chr16:70571855-70572100(+)$1	245	134	173	12.6655
=====!!ccc"""eeeeemmmmeeeee4444ccc]====	chr7:98479323-98479529(+)$1	206	43	82	22.0634
ccc[bb[a[ccc[ddddoooooodddd]ccca]bb]ccc	chr20:34328431-34328686(-)$1	255	67	106	12.8041
ggggg!!ccc[a[eeeeeooooooeeeeeaccc22gggg	chr16:89032460-89032708(-)$1	248	21	60	17.3117
$$ggggggg####bbxxxxxxxxxxxxxxxbb333gggg	chr22:50007345-50007589(-)$1	244	87	126	13.2181
ggg==========oooooo==========333ggggggg	chr10:101996745-101996966(-)$1	221	81	120	13.2813
======dddd[a[cccddddllldddd333ccc]a]ddd	chr3:160232799-160233004(-)$1	205	102	141	13.5439
iiiiiiiiieeeeeqqqqqqqqeeeee4444iiiiiiii	chr22:49958282-49958531(-)$1	249	191	230	13.0867
!ffffff!!dddd!!cccooooooccc4444ddddffff	chr2:101889400-101889608(-)$1	208	41	80	11.9694
=====!!ccc"""eeeeemmmmeeeee4444ccc]====	chr7:98479329-98479533(+)$1	204	37	76	22.0634
=====!!ccc"""eeeeemmmmeeeee4444ccc]====	chr7:98479339-98479543(+)$1	204	27	66	22.0634
bb[ccc!!ccc!!ddddnnnnndddd22ccc333ccc]b	chr22:50043694-50043930(-)$1	236	0	39	12.6066
=====!!ccc"""eeeeemmmmeeeee4444ccc]====	chr7:98479333-98479539(+)$1	206	33	72	22.0634
=====!!ccc"""eeeeemmmmeeeee4444ccc]====	chr7:98479281-98479497(+)$1	216	85	124	22.0634
iiiggggggg[a[ccc[annnnna]ccc]a]ggggggg4	chr22:50035122-50035372(-)$1	250	71	110	13.7143
=====!!ccc"""eeeeemmmmeeeee4444ccc]====	chr7:98479356-98479564(+)$1	208	10	49	22.0634
=========####cccqqqqqqqqccc333=========	chr5:179046691-179046929(-)$1	238	135	174	14.7326
$$$$$dddd####eeeeellleeeee4444dddd=====	chr19:2198960-2199219(+)$1	259	125	164	16.6708
hhhhhhh[a####eeeeennnnneeeee333a]hhhhhh	chr19:1409153-1409409(+)$1	256	162	201	16.6721
b[ccc[ccc####eeeeemmmmeeeee4444ccc]ccc3	chr5:34191257-34191526(-)$1	269	156	195	20.2292
eeeee[ccc[a!!eeeeemmmmeeeee22accceeeee2	chr11:62621998-62622203(-)$1	205	104	143	16.2831
ggggdddd[ccc!!ddddmmmmdddd]ccc]dddd]ggg	chrX:73071005-73071243(-)$1	238	135	174	12.9017
gggggggdddd"""cccnnnnnccc333dddd]gggggg	chr7:921233-921487(+)$1	254	116	155	12.7329
fffdddd[ccc!!eeeeellleeeee]ccc22dddd]ff	chr19:3698783-3699034(-)$1	251	110	149	13.4866
!ffffff[bb"""eeeeellleeeee22bb]ffffff33	chr22:50013893-50014165(-)$1	272	39	78	14.4147
dddd!!ccca[ccc[cccmmmmccc]ccc]a]ccc4444	chr18:47015513-47015726(-)$1	213	40	79	11.8977
"ccc[ccc####eeeeennnnneeeee55555ccc]ccc	chrX:135961284-135961491(-)$1	207	62	101	14.3391
eeeee[ccc[a!!eeeeemmmmeeeee22accceeeee2	chr11:62622003-62622226(-)$1	223	127	166	16.2831
ccddddbbccc!!ddddoooooodddd22ccc333bb33	chr4:119200364-119200577(+)$1	213	54	93	12.8557
ggg==========oooooo==========333ggggggg	chr10:101996707-101996945(-)$1	238	60	99	13.2813
=========####eeeeemmmmeeeee4444========	chr7:45144340-45144596(-)$1	256	61	100	21.9782
gg[ffffffa!!a!!cccmmmmccca22a]ffffffggg	chr13:92001549-92001793(+)$1	244	19	58	12.7326
[hhhhhhhh####eeeeemmmmeeeee4444hhhhhhhh	chr7:45144295-45144540(-)$1	245	5	44	17.9638
hhhhhhhh$$$$$eeeeeooooooeeeee]hhhhhhhhd	chr16:31198588-31198841(+)$1	253	129	168	14.3884
======&&&&&&&eeeeeooooooeeeee333=======	chr11:93463981-93464236(-)$1	255	42	81	15.6953
ccc####eeeee[eeeeemmmmeeeee]eeeee333ccc	chr22:49961775-49962082(-)$1	307	135	174	14.4247
=========!!eeeeeooooooeeeee4444========	chr11:65194245-65194487(+)$1	242	96	135	19.2973
iiiiiiii[ccc[addddnnnnndddd4444a]ccc]ii	chr11:3067409-3067664(-)$1	255	9	48	15.9173
oiiiiiiiiiccca[cccmmmmccc]a]ccc:ggggggg	chr10:101996766-101996995(-)$1	229	128	167	12.3097
=======!!a####ddddmmmmdddd4444a22======	chr16:85647232-85647476(+)$1	244	190	229	18.3110
hhhhhhhh$$$$$eeeeeooooooeeeee]hhhhhhhhd	chr16:31198683-31198931(+)$1	248	34	73	14.3884
!!ccc[ccc####eeeee[bb[eeeee!!ffffffccc[	chr9:139996534-139996828(+)$1	294	35	74	12.6326
hh[bb[ccc####eeeeeooooooeeeee4444ccc]bb	chr4:83819192-83819476(-)$1	284	69	108	17.4986
ffff!!ffffff!!eeeeellleeeee333fffffffff	chr15:66793489-66793706(-)$1	217	66	105	14.4083
=====!!ccc"""eeeeemmmmeeeee4444ccc]====	chr7:98479317-98479523(+)$1	206	49	88	22.0634
ddd!!eeeee[a[eeeeemmmmeeeee]a]eeeee]ddd	chr4:1237435-1237673(-)$1	238	16	55	14.4913

#otherMatches

#Seq PSSM
GCGGUCACAGGGUAAUGGGAGGCCUGUGGUUCCUGGGCU	chr1:2201793-2202103(+)$1	310	118	157	16.2454
UCUCUAAAUGGAGGCUGCAUUAAAAUGUGAGUUUUAGAG	chr22:49995123-49995387(-)$1	264	221	260	13.7761
GGGGGAGGCAGCAUUUGCUGAAGUGUGGAGUUGUCUCUG	chr16:31199378-31199623(+)$1	245	4	43	16.1986
CUGAUCAGGCUGUAGAGUGGAAUUGGGACUCUUUUGGUU	chr16:70571855-70572100(+)$1	245	134	173	12.6655
uguguguuuguguguguguguauaugCUUGUCAGUGCAU	chr7:98479323-98479529(+)$1	206	43	82	22.0634
UGUAACUUACAAAAGUAAAUAUAUGCUAUUGAUGUAAUA	chr20:34328431-34328686(-)$1	255	67	106	12.8041
GCUGCUCUGGAGUCUGUCCCUAGAGACGGCCUAAUGUGG	chr16:89032460-89032708(-)$1	248	21	60	17.3117
UUUUUUUUUUUUUUGUUACCUCCCAUCCAUCAUCCAAAA	chr22:50007345-50007589(-)$1	244	87	126	13.2181
UUACAGACAGGCUGACACAGGCUUGUCUGGCCUGAGGAU	chr10:101996745-101996966(-)$1	221	81	120	13.2813
GCAUGUGUGUGUGCUUGUGGUGGCUAUGGAAAGGGGGCA	chr3:160232799-160233004(-)$1	205	102	141	13.5439
GGCUGUGGAUGCUGCCACCGCCCAGCACAAAUUCACAGC	chr22:49958282-49958531(-)$1	249	191	230	13.0867
AUCUUUUUAGGGAUCCUGAACACACAGCCUUUCCCAGAA	chr2:101889400-101889608(-)$1	208	41	80	11.9694
uguguguuuguguguguguguauaugCUUGUCAGUGCAU	chr7:98479329-98479533(+)$1	204	37	76	22.0634
uguguguuuguguguguguguauaugCUUGUCAGUGCAU	chr7:98479339-98479543(+)$1	204	27	66	22.0634
GAGCGCCUCCAGAGCACUGCUUGUGUGAUGGUUCGUGGU	chr22:50043694-50043930(-)$1	236	0	39	12.6066
uguguguuuguguguguguguauaugCUUGUCAGUGCAU	chr7:98479333-98479539(+)$1	206	33	72	22.0634
uguguguuuguguguguguguauaugCUUGUCAGUGCAU	chr7:98479281-98479497(+)$1	216	85	124	22.0634
GGCCUGCGAUGGGGCUUCUCGCUGUAGUGUAGUUGCAGG	chr22:50035122-50035372(-)$1	250	71	110	13.7143
uguguguuuguguguguguguauaugCUUGUCAGUGCAU	chr7:98479356-98479564(+)$1	208	10	49	22.0634
UAAAGCAUUGAAAUAUAAAAUGAGGUAAAAGGUGUUUUG	chr5:179046691-179046929(-)$1	238	135	174	14.7326
UUGAAGGAUUUGAAAGGCGGUGUCUUGAUUGUCCAGAUG	chr19:2198960-2199219(+)$1	259	125	164	16.6708
GCCGCGGGUGAACGUGGGCCCGCUCCACCCAAGCCGUGG	chr19:1409153-1409409(+)$1	256	162	201	16.6721
CCUCUGGGCACGUGCUGCAGCUGUGGCUGAGGCCAAGAA	chr5:34191257-34191526(-)$1	269	156	195	20.2292
GAUGGCAGUUGUUGUUUAUGAAUAAGCUUCAUUCCAUCC	chr11:62621998-62622203(-)$1	205	104	143	16.2831
UCAUAUGUAUAUCAUGGCUUUUGUCACGUGGACAUCAUG	chrX:73071005-73071243(-)$1	238	135	174	12.9017
gcaggcuugguauauagguaaacuagugacuaggguuug	chr7:921233-921487(+)$1	254	116	155	12.7329
ggagggCUGGAAGGUCAGGGUCUGGCAUCUCUGCCCAUC	chr19:3698783-3699034(-)$1	251	110	149	13.4866
auuugugcaugggagcuaaaauaguugaguucauagagg	chr22:50013893-50014165(-)$1	272	39	78	14.4147
AUUUGUGGUUGCUGUGAUGACUAUCUUAGGACACCUUUG	chr18:47015513-47015726(-)$1	213	40	79	11.8977
CUAUGAUGAAUUUGAUUGCAUUGAUCGUCUGACAUGAUA	chrX:135961284-135961491(-)$1	207	62	101	14.3391
GAUGGCAGUUGUUGUUUAUGAAUAAGCUUCAUUCCAUCC	chr11:62622003-62622226(-)$1	223	127	166	16.2831
UGGCAAAGCUGUCACCAUUUAAUUGGUAUCAGAUUCUGA	chr4:119200364-119200577(+)$1	213	54	93	12.8557
UUACAGACAGGCUGACACAGGCUUGUCUGGCCUGAGGAU	chr10:101996707-101996945(-)$1	238	60	99	13.2813
GACCUGGGGAUAAGUUUGGCUGUGGACAGUGCUCCAGGU	chr7:45144340-45144596(-)$1	256	61	100	21.9782
UUAUCCCGGCUUGCAGCCACGAGGUCUUGAUUGGGGGAG	chr13:92001549-92001793(+)$1	244	19	58	12.7326
GACCUGGGGAUAAGUUUGGCUGUGGACAGUGCUCCAGGU	chr7:45144295-45144540(-)$1	245	5	44	17.9638
ACAUGUGCACUACUUCAAGAAAGAUUGGAAGCAUGUGUG	chr16:31198588-31198841(+)$1	253	129	168	14.3884
UAGGUUUUCUAUCUGCUACUUUGCUAGCAAUCAGCUUAU	chr11:93463981-93464236(-)$1	255	42	81	15.6953
CAGGAGGGUGCAGACUCAGAGGUGGGUGUGUGCAAGCUG	chr22:49961775-49962082(-)$1	307	135	174	14.4247
UUUUUGUUUGGUUAGGGGAAAGCCUGAAUAAAAACAGAA	chr11:65194245-65194487(+)$1	242	96	135	19.2973
GACACCUGUGCUGUGAGGUGCCUUCUCUCCAAGGGCUCG	chr11:3067409-3067664(-)$1	255	9	48	15.9173
AGGCUUGUCUGGCCUGAGGAUAUUCUGUGCUGAGGGGUG	chr10:101996766-101996995(-)$1	229	128	167	12.3097
CCCCCGCGGCAGGUGCUGGCGACGGCCGAGGAAGCGGGG	chr16:85647232-85647476(+)$1	244	190	229	18.3110
ACAUGUGCACUACUUCAAGAAAGAUUGGAAGCAUGUGUG	chr16:31198683-31198931(+)$1	248	34	73	14.3884
UACAUUCACGCUGUUGCAGGCGUGCAGGUCGGUGCUGUU	chr9:139996534-139996828(+)$1	294	35	74	12.6326
UUUGGUUAUAUCAUUGCUUCUUCUAGUAACUUCAUAUCC	chr4:83819192-83819476(-)$1	284	69	108	17.4986
CCACUUAAGGUCCGUGUUUCUGAAACAAAUGAUUUUGUG	chr15:66793489-66793706(-)$1	217	66	105	14.4083
uguguguuuguguguguguguauaugCUUGUCAGUGCAU	chr7:98479317-98479523(+)$1	206	49	88	22.0634
UCGCUGGGCUGAGAGCCGUGUGCGGCUGUGAGUUUUUGA	chr4:1237435-1237673(-)$1	238	16	55	14.4913

#DB
((((((.(((((..(((((...)))))...)))))))))	chr1:2201793-2202103(+)$1	1	118	157	16.2454
((((((((.....(((.(((......)))))))))))))	chr22:49995123-49995387(-)$1	1	221	260	13.7761
((((((((((((.(((((......)))))))))))))).	chr16:31199378-31199623(+)$1	1	4	43	16.1986
(((.((((.(...(((((...(((((((((((..(((((	chr16:70571855-70572100(+)$1	1	134	173	12.6655
(((((..(((...(((((....)))))....))).))))	chr7:98479323-98479529(+)$1	1	43	82	22.0634
(((.((.(.(((.((((......)))).)))).)).)))	chr20:34328431-34328686(-)$1	1	67	106	12.8041
(((((..(((.(.(((((......)))))))))..))))	chr16:89032460-89032708(-)$1	1	21	60	17.3117
..(((((((....((...............))...))))	chr22:50007345-50007589(-)$1	1	87	126	13.2181
(((((((((((((......))))))))))...)))))))	chr10:101996745-101996966(-)$1	1	81	120	13.2813
))))))((((.(.(((((((...))))...))).).)))	chr3:160232799-160233004(-)$1	1	102	141	13.5439
((((((((((((((........)))))....))))))))	chr22:49958282-49958531(-)$1	1	191	230	13.0867
.((((((..((((..(((......)))....))))))))	chr2:101889400-101889608(-)$1	1	41	80	11.9694
(((((..(((...(((((....)))))....))).))))	chr7:98479329-98479533(+)$1	1	37	76	22.0634
(((((..(((...(((((....)))))....))).))))	chr7:98479339-98479543(+)$1	1	27	66	22.0634
((.(((..(((..((((.....))))..)))...))).)	chr22:50043694-50043930(-)$1	1	0	39	12.6066
(((((..(((...(((((....)))))....))).))))	chr7:98479333-98479539(+)$1	1	33	72	22.0634
(((((..(((...(((((....)))))....))).))))	chr7:98479281-98479497(+)$1	1	85	124	22.0634
((((((((((.(.(((.(.....).))).).))))))).	chr22:50035122-50035372(-)$1	1	71	110	13.7143
(((((..(((...(((((....)))))....))).))))	chr7:98479356-98479564(+)$1	1	10	49	22.0634
(((((((((....(((........)))...)))))))))	chr5:179046691-179046929(-)$1	1	135	174	14.7326
.....((((....(((((...)))))....)))))))))	chr19:2198960-2199219(+)$1	1	125	164	16.6708
(((((((.(....(((((.....)))))...).))))))	chr19:1409153-1409409(+)$1	1	162	201	16.6721
(.(((.(((....(((((....)))))....))).))).	chr5:34191257-34191526(-)$1	1	156	195	20.2292
(((((.(((.(..(((((....)))))..))))))))).	chr11:62621998-62622203(-)$1	1	104	143	16.2831
((((((((.(((..((((....)))).))).)))).)))	chrX:73071005-73071243(-)$1	1	135	174	12.9017
(((((((((((...(((.....)))...)))).))))))	chr7:921233-921487(+)$1	1	116	155	12.7329
(((((((.(((..(((((...))))).)))..)))).))	chr19:3698783-3699034(-)$1	1	110	149	13.4866
.((((((.((...(((((...)))))..)).))))))..	chr22:50013893-50014165(-)$1	1	39	78	14.4147
((((..((((.(((.(((....))).))).).)))....	chr18:47015513-47015726(-)$1	1	40	79	11.8977
.(((.(((....(((((.....))))).....))).)))	chrX:135961284-135961491(-)$1	1	62	101	14.3391
(((((.(((.(..(((((....)))))..))))))))).	chr11:62622003-62622226(-)$1	1	127	166	16.2831
(((((((((((..((((......))))..)))...))..	chr4:119200364-119200577(+)$1	1	54	93	12.8557
(((((((((((((......))))))))))...)))))))	chr10:101996707-101996945(-)$1	1	60	99	13.2813
(((((((((....(((((....)))))....))))))))	chr7:45144340-45144596(-)$1	1	61	100	21.9782
((.(((((((..(..(((....))))..).)))))))))	chr13:92001549-92001793(+)$1	1	19	58	12.7326
.((((((((....(((((....)))))....))))))))	chr7:45144295-45144540(-)$1	1	5	44	17.9638
((((((((.....(((((......))))).))))))))(	chr16:31198588-31198841(+)$1	1	129	168	14.3884
((((((.......(((((......)))))...)))))))	chr11:93463981-93464236(-)$1	1	42	81	15.6953
(((....(((((.(((((....))))).)))))...)))	chr22:49961775-49962082(-)$1	1	135	174	14.4247
(((((((((..(((((......)))))....))))))))	chr11:65194245-65194487(+)$1	1	96	135	19.2973
((((((((.(((.(((((.....))))....).))).))	chr11:3067409-3067664(-)$1	1	9	48	15.9173
.)))))))))((((.(((....))).).))).(((((((	chr10:101996766-101996995(-)$1	1	128	167	12.3097
(((((((..(....((((....))))....)..))))))	chr16:85647232-85647476(+)$1	1	190	229	18.3110
((((((((.....(((((......))))).))))))))(	chr16:31198683-31198931(+)$1	1	34	73	14.3884
..(((.(((....(((((.((.(((((..(((((((((.	chr9:139996534-139996828(+)$1	1	35	74	12.6326
((.((.(((....(((((......)))))....))).))	chr4:83819192-83819476(-)$1	1	69	108	17.4986
((((..((((((..(((((...)))))...)))))))))	chr15:66793489-66793706(-)$1	1	66	105	14.4083
(((((..(((...(((((....)))))....))).))))	chr7:98479317-98479523(+)$1	1	49	88	22.0634
(((..(((((.(.(((((....))))).).))))).)))	chr4:1237435-1237673(-)$1	1	16	55	14.4913

#PSSM
= : 0.28	g : 0.14	c : 0.10	h : 0.08	i : 0.06	! : 0.06	$ : 0.04	b : 0.04	e : 0.04	f : 0.04	d : 0.04	" : 0.02	[ : 0.02	o : 0.02	
= : 0.28	g : 0.14	c : 0.12	h : 0.10	i : 0.08	f : 0.08	$ : 0.04	e : 0.04	d : 0.04	b : 0.02	[ : 0.02	! : 0.02	
= : 0.28	g : 0.14	c : 0.14	i : 0.08	f : 0.08	h : 0.08	[ : 0.06	d : 0.06	e : 0.04	$ : 0.02	
= : 0.32	g : 0.12	i : 0.08	f : 0.08	c : 0.08	h : 0.08	d : 0.06	[ : 0.04	e : 0.04	$ : 0.02	# : 0.02	b : 0.02	! : 0.02	
= : 0.32	g : 0.10	i : 0.08	d : 0.08	h : 0.08	f : 0.06	c : 0.06	! : 0.06	b : 0.04	e : 0.04	$ : 0.02	[ : 0.02	# : 0.02	
! : 0.20	= : 0.18	d : 0.10	[ : 0.10	g : 0.08	i : 0.08	h : 0.08	f : 0.06	c : 0.04	b : 0.02	# : 0.02	e : 0.02	
! : 0.18	= : 0.14	c : 0.14	d : 0.10	i : 0.08	f : 0.08	h : 0.08	g : 0.06	[ : 0.04	b : 0.02	& : 0.02	# : 0.02	e : 0.02	
c : 0.30	= : 0.12	d : 0.10	i : 0.08	e : 0.06	! : 0.06	[ : 0.06	h : 0.06	g : 0.04	f : 0.04	a : 0.02	b : 0.02	& : 0.02	
c : 0.34	= : 0.10	[ : 0.08	e : 0.06	$ : 0.06	i : 0.06	d : 0.06	g : 0.04	! : 0.04	f : 0.04	a : 0.02	b : 0.02	# : 0.02	h : 0.02	& : 0.02	
c : 0.28	# : 0.20	e : 0.08	a : 0.08	$ : 0.06	d : 0.06	i : 0.04	= : 0.04	[ : 0.04	g : 0.02	b : 0.02	& : 0.02	! : 0.02	f : 0.02	
# : 0.22	" : 0.18	c : 0.14	[ : 0.10	e : 0.06	$ : 0.06	= : 0.04	d : 0.04	a : 0.04	! : 0.04	i : 0.02	& : 0.02	f : 0.02	
# : 0.22	" : 0.20	! : 0.12	c : 0.10	e : 0.08	a : 0.08	$ : 0.06	= : 0.04	i : 0.02	d : 0.02	& : 0.02	f : 0.02	
" : 0.20	# : 0.20	! : 0.16	[ : 0.16	$ : 0.06	e : 0.06	= : 0.04	c : 0.04	d : 0.02	a : 0.02	& : 0.02	
e : 0.59	! : 0.10	c : 0.10	d : 0.06	o : 0.04	a : 0.04	b : 0.02	" : 0.02	# : 0.02	
e : 0.61	d : 0.12	c : 0.10	o : 0.04	! : 0.04	[ : 0.04	b : 0.02	q : 0.02	
e : 0.61	c : 0.18	d : 0.12	o : 0.04	x : 0.02	q : 0.02	
e : 0.59	d : 0.14	c : 0.10	o : 0.06	[ : 0.04	q : 0.04	x : 0.02	
e : 0.57	c : 0.10	o : 0.10	d : 0.08	n : 0.06	q : 0.04	x : 0.02	a : 0.02	
m : 0.38	o : 0.24	n : 0.12	l : 0.06	e : 0.04	q : 0.04	c : 0.02	" : 0.02	x : 0.02	d : 0.02	[ : 0.02	
m : 0.38	o : 0.20	n : 0.12	l : 0.10	= : 0.04	q : 0.04	c : 0.02	" : 0.02	x : 0.02	d : 0.02	b : 0.02	
m : 0.38	o : 0.22	l : 0.12	n : 0.12	= : 0.04	q : 0.04	" : 0.02	x : 0.02	b : 0.02	
m : 0.38	o : 0.22	n : 0.12	l : 0.06	= : 0.06	e : 0.06	q : 0.04	x : 0.02	[ : 0.02	
e : 0.46	o : 0.20	c : 0.08	= : 0.06	d : 0.06	n : 0.06	x : 0.02	l : 0.02	q : 0.02	
e : 0.48	o : 0.16	d : 0.14	c : 0.08	= : 0.06	x : 0.02	a : 0.02	q : 0.02	
e : 0.61	d : 0.14	c : 0.12	= : 0.06	o : 0.02	x : 0.02	] : 0.02	
e : 0.61	d : 0.14	= : 0.06	c : 0.06	] : 0.04	o : 0.02	x : 0.02	3 : 0.02	a : 0.02	
e : 0.55	c : 0.10	d : 0.08	= : 0.06	2 : 0.06	4 : 0.04	] : 0.04	x : 0.02	3 : 0.02	a : 0.02	
4 : 0.32	e : 0.14	2 : 0.12	3 : 0.10	c : 0.10	] : 0.08	= : 0.06	x : 0.02	5 : 0.02	! : 0.02	
4 : 0.32	c : 0.14	e : 0.14	3 : 0.10	= : 0.06	2 : 0.06	a : 0.04	x : 0.02	] : 0.02	d : 0.02	b : 0.02	5 : 0.02	! : 0.02	
4 : 0.34	3 : 0.16	c : 0.14	] : 0.10	a : 0.08	i : 0.02	= : 0.02	x : 0.02	d : 0.02	b : 0.02	5 : 0.02	e : 0.02	f : 0.02	
4 : 0.30	c : 0.18	3 : 0.08	e : 0.06	] : 0.06	f : 0.06	= : 0.04	d : 0.04	a : 0.04	h : 0.04	i : 0.02	b : 0.02	2 : 0.02	5 : 0.02	
c : 0.28	= : 0.08	3 : 0.08	d : 0.08	f : 0.08	e : 0.06	a : 0.06	h : 0.06	i : 0.04	2 : 0.04	b : 0.02	g : 0.02	] : 0.02	5 : 0.02	: : 0.02	4 : 0.02	
c : 0.28	= : 0.10	] : 0.08	g : 0.08	d : 0.08	f : 0.08	e : 0.06	3 : 0.06	h : 0.06	i : 0.04	! : 0.02	2 : 0.02	4 : 0.02	
c : 0.24	= : 0.12	g : 0.10	e : 0.08	3 : 0.08	d : 0.08	h : 0.08	f : 0.08	i : 0.04	! : 0.02	b : 0.02	2 : 0.02	] : 0.02	
] : 0.16	= : 0.14	e : 0.10	g : 0.10	c : 0.10	h : 0.08	f : 0.08	3 : 0.06	d : 0.06	i : 0.04	b : 0.02	2 : 0.02	a : 0.02	
= : 0.28	g : 0.16	] : 0.10	c : 0.10	f : 0.08	h : 0.08	e : 0.06	i : 0.04	d : 0.02	4 : 0.02	b : 0.02	3 : 0.02	
= : 0.28	g : 0.20	c : 0.12	h : 0.08	e : 0.06	f : 0.06	] : 0.06	i : 0.04	d : 0.04	4 : 0.02	b : 0.02	
= : 0.28	g : 0.20	c : 0.10	h : 0.08	i : 0.06	e : 0.06	f : 0.06	d : 0.04	3 : 0.04	] : 0.02	4 : 0.02	b : 0.02	
= : 0.28	g : 0.18	d : 0.08	c : 0.06	f : 0.06	3 : 0.06	i : 0.04	b : 0.04	4 : 0.04	h : 0.04	2 : 0.04	7 : 0.02	e : 0.02	[ : 0.02	

#score	778.085941039375
#seq	49
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727HMM_SERBP1_transcript_m1_run2.txt

#BEAR
cc!!ffffff[ddddbboooooobb]dddd]ffffffccc	chr1:109642970-109643202(+)$1	232	108	148	13.0264
ee"""bb[ccc[a[ddddnnnnndddd]accc]bb333ee	chr11:64001965-64002310(+)$1	345	154	194	13.2577
ggggggg%%%%%%ddddoooooodddd4444ggggggg22	chr16:30079896-30080121(+)$1	225	101	141	14.8703
iiiiiiiii[ddddddddmmmmdddd]ddddiiiiiiiii	chr22:21272027-21272359(+)$1	332	241	281	12.0933
!!bb[bb[bb[a!!ddddoooooodddd22a]bb]bb]bb	chr16:29818267-29818520(+)$1	253	155	195	14.1819
dddd[bb!!ccc[ddddoooooodddd22cccbbddddcc	chr1:32479388-32479656(+)$1	268	184	224	17.0100
ccc"""dddd"""ddddoooooodddd333dddd333ccc	chr19:49611208-49611487(+)$1	279	32	72	18.6815
iiiiiidddd"""ddddoooooodddd333dddd:::ccc	chr2:234197329-234197609(+)$1	280	106	146	15.2291
e"""a[ggggggg[cccooooooccc]ggggggg]a]eee	chr4:53578729-53578935(+)$1	206	12	52	14.9625
ggggg[dddd"""ddddoooooodddd22ddddggggggg	chr2:234184325-234184577(+)$1	252	194	234	17.9150
#eeeee!!dddd!!eeeeellleeeee22dddd333eeee	chr16:88870214-88870492(+)$1	278	135	175	11.9418
dd$$$$$dddd[bb[bboooooobbbb22dddd333dddd	chr19:1241671-1242017(+)$1	346	177	217	12.6944
!!=============bboooooobb]=============2	chr15:75230176-75230486(-)$1	310	4	44	15.7804
[eeeee####gggggggmmmmggggggg333eeeee]ccc	chr1:8925282-8925572(-)$1	290	195	235	10.5819
hh[bb!!a!!bb!!bbaooooooa]bb22bb22a22bbhh	chr1:32403543-32403846(-)$1	303	44	84	12.8653
###==========ddddoooooodddd55555========	chr11:810132-810381(+)$1	249	23	63	14.7463
hhhh[bb"""cccddddoooooodddd22cccbb]hhhhh	chr19:3984113-3984437(-)$1	324	201	241	17.2088
eeeeeeee$$$$$ddddoooooodddd7777777eeeee4	chr2:234197219-234197464(+)$1	245	56	96	11.9623
"dddd[eeeee!!ddddoooooodddd22eeeee]dddd]	chr4:53578690-53578915(+)$1	225	107	147	17.4823
hhhhbb[eeeee"""ddddmmmmdddd333eeeee]bb]h	chr16:30078454-30078695(+)$1	241	46	86	11.7425
hhhhhh]ccc:::ddddoooooodddd===========rr	chr19:17973315-17973538(+)$1	223	134	174	12.3654
cc[ccc####dddd[bbmmmmbbdddd333ccc333ccc2	chr6:37787506-37787819(+)$1	313	33	73	13.4210
$ffffff!!gggggggddddllldddd22ggggggg22ff	chr7:75931979-75932258(+)$1	279	135	175	13.2810
cc!!ffffff[ddddbboooooobb]dddd]ffffffccc	chr1:109642946-109643170(+)$1	224	132	172	13.0264
cc!!ffffff[ddddbboooooobb]dddd]ffffffccc	chr1:109642901-109643142(+)$1	241	177	217	13.0264
:ccccccbb[ccc[cccoooooocccccc]bb]ccc]ccc	chr16:30081117-30081420(+)$1	303	263	303	13.1741
eeee:==========[ddddllldddd22==========:	chr17:7480024-7480298(+)$1	274	152	192	13.2804
ggggggg%%%%%%ddddoooooodddd4444ggggggg22	chr16:30079864-30080096(+)$1	232	133	173	14.8703
#eeeee[bb[gggggggooooooggggggg22bb]eeeee	chr1:109643020-109643250(+)$1	230	156	196	12.5817
hh[a$$$$$ggggggg[bboooooobbggggggg]a]hhh	chr6:37137955-37138229(+)$1	274	171	211	10.7061
hhh[ccc"""dddd[cccmmmmccc]dddd]ccc]hhhhh	chr19:3985275-3985512(-)$1	237	181	221	10.5396
"dddd[eeeee!!ddddoooooodddd22eeeee]dddd]	chr4:53578715-53578926(+)$1	211	82	122	17.4823
"dddd[eeeee!!ddddoooooodddd22eeeee]dddd]	chr4:53578735-53579001(+)$1	266	62	102	17.4823
cccggggggg[eeeeeooooooeeeeeggggggg22cccG	chr12:6619296-6619603(+)$1	307	173	213	12.5814
ffff[ccc!!ccceeeeemmmmeeeee]ccc333cccfff	chr3:169482498-169482790(-)$1	292	199	239	10.7271
[ccc[eeeee"""ddddoooooodddd]eeeee333ccc]	chr16:204265-204551(+)$1	286	37	77	18.2877
iiii[ccc"""eeeeeooooooeeeee]ccciiiiiiiii	chr19:49468554-49468819(+)$1	265	33	73	14.6640
[ccc[a[bb[ccc!!cccooooooccc]ccc]bb]accc]	chr8:101733713-101733973(-)$1	260	96	136	15.3668
dddd[bb!!eeeee[cccooooooccc]eeeee]bb22dd	chr20:57466518-57466792(+)$1	274	145	185	12.9086
FFFAggggggg!!cccddddllldddd22ccc22gggggg	chr11:811580-811894(+)$1	314	117	157	12.1696
"dddd[eeeee!!ddddoooooodddd22eeeee]dddd]	chr4:53578685-53578890(+)$1	205	112	152	17.4823
#ccc!!ccc[ccc[bboooooobb]ccc]ccc22ccc]hh	chr16:2015132-2015366(+)$1	234	77	117	13.0855
dddd[bb!!eeeee[cccooooooccc]eeeee]bb22dd	chr20:57466603-57466870(+)$1	267	60	100	12.9086
[ccc[eeeee"""ddddoooooodddd]eeeee333ccc]	chr16:204184-204454(+)$1	270	118	158	18.2877
ggg[ccc[a[cccacccmmmmccc]a333ccc]a]ccc]g	chr12:7076461-7076716(-)$1	255	167	207	12.5339
!!cccdddd####ddddnnnnndddd4444dddd]ccc22	chr16:58231517-58231871(-)$1	354	309	349	13.3357
[ccc[a[bb[ccc!!cccooooooccc]ccc]bb]accc]	chr8:101733773-101734042(-)$1	269	165	205	15.3668
eeee[==========[ddddllldddd22==========7	chr17:7480098-7480348(+)$1	250	78	118	14.8771
dd"""bb####ccc!!ddddllldddd22ccc333bb333	chr6:37138029-37138340(+)$1	311	219	259	15.1576
eeee[dddd[accc[bboooooobbccc]a]ddddeeeee	chr17:80049218-80049476(-)$1	258	153	193	12.9408
'''bb"""eeeee[cccooooooccc333eeeee333bb9	chr20:37058211-37058547(-)$1	336	239	279	12.7675
Dffffff!!gggggggddddllldddd22ggggggg22ff	chr7:75932086-75932314(+)$1	228	28	68	12.2678
eee:ddddcccccc!!ddddllldddd22ccc]ccc4444	chr3:141595429-141595715(+)$1	286	227	267	12.4476
fff[cccccc[ccc!!ddddllldddd22ccc]ccc22cc	chr16:30080038-30080308(+)$1	270	75	115	13.8826
e"""a[ccc####ddddoooooodddd22ccca]eeeee:	chr2:55276993-55277273(-)$1	280	66	106	17.2345

#otherMatches

#Seq PSSM
CUGUGCAGCGAGGCCCCUUAGGCGGCGGCCACGCUGUGGU	chr1:109642970-109643202(+)$1	232	108	148	13.0264
CcgcugcgcugcgcugcgcugcCUGCACCCAGGGCUCGGG	chr11:64001965-64002310(+)$1	345	154	194	13.2577
CAAAUGGCGAGACUACCACCCAAGGUGAGAACUGUUUGAU	chr16:30079896-30080121(+)$1	225	101	141	14.8703
UGGGGCCGGUGUCUCGCCAGGAGGCGCAGACCCGGCUCCA	chr22:21272027-21272359(+)$1	332	241	281	12.0933
cugccgccgucgcugccgcgcccccggccccugccgccgc	chr16:29818267-29818520(+)$1	253	155	195	14.1819
UCCUUGGAUCGCACAUCCUCCCAGAUGCAGCGCCGGGACG	chr1:32479388-32479656(+)$1	268	184	224	17.0100
CCGGGACCGGAAGCGGCGAAGCAGCCGGAGUCGGGAGCGG	chr19:49611208-49611487(+)$1	279	32	72	18.6815
CAGCUGACACUCCGUGAUGUCCCUCAUUCUGUGUUCCUCC	chr2:234197329-234197609(+)$1	280	106	146	15.2291
gcccggccggcccgUGGGUCCGAUCAGGGGCUGGGCUCGC	chr4:53578729-53578935(+)$1	206	12	52	14.9625
UCAGUGUGUGUUUCUGAGAGUGAUCGGCUCACAGCUGACG	chr2:234184325-234184577(+)$1	252	194	234	17.9150
CCGCGCCCCGGCCUCCGCUACCAGUGGCAGCCGCAAgcgc	chr16:88870214-88870492(+)$1	278	135	175	11.9418
caugcugcccgccgcgcugcuccgccgcccgggacuuggc	chr19:1241671-1242017(+)$1	346	177	217	12.6944
AGUCGCAGUGGGCGGGCCUACGUGCUCCGCCCGCUGUGAG	chr15:75230176-75230486(-)$1	310	4	44	15.7804
GACCUGUACAAGUCCUUCAUCAAGGACUACCCAGGUGAGU	chr1:8925282-8925572(-)$1	290	195	235	10.5819
gccgcagcagcagcagcaAGACGGACUCGUGGAGACGcgc	chr1:32403543-32403846(-)$1	303	44	84	12.8653
UCGCCCGGCGGCCCCGGGAUGGGCCGGCAGGAGGCCGCCG	chr11:810132-810381(+)$1	249	23	63	14.7463
UGGUGUGCAAGGCGGGCAUCAUCGCCUCGGCCCGGGCCGG	chr19:3984113-3984437(-)$1	324	201	241	17.2088
UCUGGUGUUUUACACAUAGAAAAAUGUUGAUCAUGCACUG	chr2:234197219-234197464(+)$1	245	56	96	11.9623
CUUUGCCCGCCUCGAGCUCCUCUGCUCCCGGCGGCCAGAA	chr4:53578690-53578915(+)$1	225	107	147	17.4823
AGAUGAUGGGAAACCCUAGCUAACUAGUCCUUCCCCUCUG	chr16:30078454-30078695(+)$1	241	46	86	11.7425
GUGCAAACAGCAAGCGGAUCUUGUCGCCUUUGGGGGGCUG	chr19:17973315-17973538(+)$1	223	134	174	12.3654
CCAGCUGACCGGCCUGGAAUcccggcuccgagccccggac	chr6:37787506-37787819(+)$1	313	33	73	13.4210
UCGACCAGGCCUUCGGGCUGCCCCGGCUGCCGGAGGAGUG	chr7:75931979-75932258(+)$1	279	135	175	13.2810
CUGUGCAGCGAGGCCCCUUAGGCGGCGGCCACGCUGUGGU	chr1:109642946-109643170(+)$1	224	132	172	13.0264
CUGUGCAGCGAGGCCCCUUAGGCGGCGGCCACGCUGUGGU	chr1:109642901-109643142(+)$1	241	177	217	13.0264
CUGGGUGGAUGGGACUCGGAGAAGAGCCCUUCUCACUCCA	chr16:30081117-30081420(+)$1	303	263	303	13.1741
CCAGUGCAGCCCUGGCAGUGUCCUACUUCCCAGGGCUGUU	chr17:7480024-7480298(+)$1	274	152	192	13.2804
CAAAUGGCGAGACUACCACCCAAGGUGAGAACUGUUUGAU	chr16:30079864-30080096(+)$1	232	133	173	14.8703
AGAUAGACGAGGCCGGGCUUGUCCCCGGCCACUGAUUAUC	chr1:109643020-109643250(+)$1	230	156	196	12.5817
CCCGACCCCGCUGGCGCGCCCUCCCGCCGCCAGUCCCGGC	chr6:37137955-37138229(+)$1	274	171	211	10.7061
CUCCGCGGGGCCUACGCUGCCUAGCCUGGGACGCUGGGGC	chr19:3985275-3985512(-)$1	237	181	221	10.5396
CUUUGCCCGCCUCGAGCUCCUCUGCUCCCGGCGGCCAGAA	chr4:53578715-53578926(+)$1	211	82	122	17.4823
CUUUGCCCGCCUCGAGCUCCUCUGCUCCCGGCGGCCAGAA	chr4:53578735-53579001(+)$1	266	62	102	17.4823
CUUGGUGGGCGAUACAGAGUUAUGUGUGUUCACUGUAAGG	chr12:6619296-6619603(+)$1	307	173	213	12.5814
CGGUCGGCCCGGGGCUUCUCCGGAGGCACCCACUGCCACC	chr3:169482498-169482790(-)$1	292	199	239	10.7271
CGCGCGCUUCCCCGCCGACUUCACGGCCGAGGCCCACGCC	chr16:204265-204551(+)$1	286	37	77	18.2877
CUGUCUCUUGCUUCAACAGUGUUUGGACGGAACAGAUCCG	chr19:49468554-49468819(+)$1	265	33	73	14.6640
CGGCACUCGCUCUCCUCCUCUCACGGAAAGGUCGCGGCCU	chr8:101733713-101733973(-)$1	260	96	136	15.3668
gccgagcccgcgcccggcccgcccgcccggcgcugccccg	chr20:57466518-57466792(+)$1	274	145	185	12.9086
UGCCGGUCCAUCUGUGGCCUGCCAGGUUUCGCUUGUGGAC	chr11:811580-811894(+)$1	314	117	157	12.1696
CUUUGCCCGCCUCGAGCUCCUCUGCUCCCGGCGGCCAGAA	chr4:53578685-53578890(+)$1	205	112	152	17.4823
UGGCCGUGGCCGCGGGUGAGAUUCGGCGCCCAGAGCCCCC	chr16:2015132-2015366(+)$1	234	77	117	13.0855
gccgagcccgcgcccggcccgcccgcccggcgcugccccg	chr20:57466603-57466870(+)$1	267	60	100	12.9086
CGCGCGCUUCCCCGCCGACUUCACGGCCGAGGCCCACGCC	chr16:204184-204454(+)$1	270	118	158	18.2877
CCACGGUAGGGCUGGGCACAAGCCACCUGAGCGCAACCUU	chr12:7076461-7076716(-)$1	255	167	207	12.5339
UACGAGGCUCACGUCCCGAGCUGGGGGUAAAGCCGUcgcc	chr16:58231517-58231871(-)$1	354	309	349	13.3357
CGGCACUCGCUCUCCUCCUCUCACGGAAAGGUCGCGGCCU	chr8:101733773-101734042(-)$1	269	165	205	15.3668
CCAGUGCAGCCCUGGCAGUGUCCUACUUCCCAGGGCUGUU	chr17:7480098-7480348(+)$1	250	78	118	14.8771
ccacagccacagccccagGCAUAGCCUUCGGCACAGCCCC	chr6:37138029-37138340(+)$1	311	219	259	15.1576
CUGCUGCGGGCCAGCGGACGCACCCCUGAGGCCGUGCAGA	chr17:80049218-80049476(-)$1	258	153	193	12.9408
CUCCCUCCCACCACGUCUUAGAUGGCUCCUGGUGCCUGGC	chr20:37058211-37058547(-)$1	336	239	279	12.7675
UCGACCAGGCCUUCGGGCUGCCCCGGCUGCCGGAGGAGUG	chr7:75932086-75932314(+)$1	228	28	68	12.2678
AGAAGAAGUCCCUCAACCAGAGCCUGGCCGAGUGGAAGCU	chr3:141595429-141595715(+)$1	286	227	267	12.4476
CUCUGACCCCUUCCUCUUCUCUUAGGGUUGGAUGGGCUGU	chr16:30080038-30080308(+)$1	270	75	115	13.8826
CCCUGAUGGACUUCGGAAAUGACUUCGUgccgccggcgcc	chr2:55276993-55277273(-)$1	280	66	106	17.2345

#DB
((..((((((.((((((......)).)))).)))))))))	chr1:109642970-109643202(+)$1	1	108	148	13.0264
((...((.(((.(.((((.....)))).)))).))...))	chr11:64001965-64002310(+)$1	1	154	194	13.2577
(((((((......((((......))))....)))))))..	chr16:30079896-30080121(+)$1	1	101	141	14.8703
(((((((((.((((((((....)))).)))))))))))))	chr22:21272027-21272359(+)$1	1	241	281	12.0933
..((.((.((.(..((((......))))..).)).)).))	chr16:29818267-29818520(+)$1	1	155	195	14.1819
((((.((..(((.((((......))))..)))))))))))	chr1:32479388-32479656(+)$1	1	184	224	17.0100
(((...((((...((((......))))...))))...)))	chr19:49611208-49611487(+)$1	1	32	72	18.6815
))))))((((...((((......))))...))))...(((	chr2:234197329-234197609(+)$1	1	106	146	15.2291
(...(.(((((((.(((......))).))))))).).)))	chr4:53578729-53578935(+)$1	1	12	52	14.9625
(((((.((((...((((......))))..)))))))))))	chr2:234184325-234184577(+)$1	1	194	234	17.9150
.(((((..((((..(((((...)))))..))))...))))	chr16:88870214-88870492(+)$1	1	135	175	11.9418
((.....((((.((.((......))))..))))...))))	chr19:1241671-1242017(+)$1	1	177	217	12.6944
..(((((((((((((((......)).))))))))))))).	chr15:75230176-75230486(-)$1	1	4	44	15.7804
.(((((....(((((((....)))))))...))))).)))	chr1:8925282-8925572(-)$1	1	195	235	10.5819
((.((..(..((..(((......).))..))..)..))))	chr1:32403543-32403846(-)$1	1	44	84	12.8653
...((((((((((((((......)))).....))))))))	chr11:810132-810381(+)$1	1	23	63	14.7463
((((.((...(((((((......))))..))))).)))))	chr19:3984113-3984437(-)$1	1	201	241	17.2088
((((((((.....((((......)))).......))))).	chr2:234197219-234197464(+)$1	1	56	96	11.9623
.((((.(((((..((((......))))..))))).)))).	chr4:53578690-53578915(+)$1	1	107	147	17.4823
((((((.(((((...((((....))))...))))).)).)	chr16:30078454-30078695(+)$1	1	46	86	11.7425
)))))).)))...((((......))))(((((((((((..	chr19:17973315-17973538(+)$1	1	134	174	12.3654
((.(((....((((.((....))))))...)))...))).	chr6:37787506-37787819(+)$1	1	33	73	13.4210
.((((((..(((((((((((...))))..)))))))..))	chr7:75931979-75932258(+)$1	1	135	175	13.2810
((..((((((.((((((......)).)))).)))))))))	chr1:109642946-109643170(+)$1	1	132	172	13.0264
((..((((((.((((((......)).)))).)))))))))	chr1:109642901-109643142(+)$1	1	177	217	13.0264
.((((((((.(((.(((......)))))).)).))).)))	chr16:30081117-30081420(+)$1	1	263	303	13.1741
)))).((((((((((.((((...))))..)))))))))).	chr17:7480024-7480298(+)$1	1	152	192	13.2804
(((((((......((((......))))....)))))))..	chr16:30079864-30080096(+)$1	1	133	173	14.8703
.(((((.((.(((((((......)))))))..)).)))))	chr1:109643020-109643250(+)$1	1	156	196	12.5817
((.(.....(((((((.((......))))))))).).)))	chr6:37137955-37138229(+)$1	1	171	211	10.7061
(((.(((...((((.(((....))).)))).))).)))))	chr19:3985275-3985512(-)$1	1	181	221	10.5396
.((((.(((((..((((......))))..))))).)))).	chr4:53578715-53578926(+)$1	1	82	122	17.4823
.((((.(((((..((((......))))..))))).)))).	chr4:53578735-53579001(+)$1	1	62	102	17.4823
((((((((((.(((((......))))))))))))..))))	chr12:6619296-6619603(+)$1	1	173	213	12.5814
((((.(((..((((((((....))))).)))...))))))	chr3:169482498-169482790(-)$1	1	199	239	10.7271
.(((.(((((...((((......)))).)))))...))).	chr16:204265-204551(+)$1	1	37	77	18.2877
((((.(((...(((((......))))).))))))))))))	chr19:49468554-49468819(+)$1	1	33	73	14.6640
.(((.(.((.(((..(((......))).))).)).)))).	chr8:101733713-101733973(-)$1	1	96	136	15.3668
((((.((..(((((.(((......))).))))).))..))	chr20:57466518-57466792(+)$1	1	145	185	12.9086
(((((((((((..(((((((...))))..)))..))))))	chr11:811580-811894(+)$1	1	117	157	12.1696
.((((.(((((..((((......))))..))))).)))).	chr4:53578685-53578890(+)$1	1	112	152	17.4823
.(((..(((.(((.((......)).))).)))..))).))	chr16:2015132-2015366(+)$1	1	77	117	13.0855
((((.((..(((((.(((......))).))))).))..))	chr20:57466603-57466870(+)$1	1	60	100	12.9086
.(((.(((((...((((......)))).)))))...))).	chr16:204184-204454(+)$1	1	118	158	18.2877
(((.(((.(.(((((((....))).)...))).).))).)	chr12:7076461-7076716(-)$1	1	167	207	12.5339
..(((((((....((((.....))))....)))).)))..	chr16:58231517-58231871(-)$1	1	309	349	13.3357
.(((.(.((.(((..(((......))).))).)).)))).	chr8:101733773-101734042(-)$1	1	165	205	15.3668
((((.((((((((((.((((...))))..)))))))))).	chr17:7480098-7480348(+)$1	1	78	118	14.8771
((...((....(((..((((...))))..)))...))...	chr6:37138029-37138340(+)$1	1	219	259	15.1576
((((.((((.((((.((......))))).).)))))))))	chr17:80049218-80049476(-)$1	1	153	193	12.9408
...((...(((((.(((......)))...)))))...)).	chr20:37058211-37058547(-)$1	1	239	279	12.7675
(((((((..(((((((((((...))))..)))))))..))	chr7:75932086-75932314(+)$1	1	28	68	12.2678
))).((((((((((..((((...))))..))).)))....	chr3:141595429-141595715(+)$1	1	227	267	12.4476
(((.((((((.(((..((((...))))..))).)))..))	chr16:30080038-30080308(+)$1	1	75	115	13.8826
(...(.(((....((((......))))..)))).))))).	chr2:55276993-55277273(-)$1	1	66	106	17.2345

#PSSM
e : 0.14	c : 0.10	h : 0.10	d : 0.09	[ : 0.09	g : 0.07	# : 0.07	" : 0.07	i : 0.05	! : 0.05	f : 0.03	$ : 0.01	: : 0.01	F : 0.01	' : 0.01	D : 0.01	
c : 0.21	e : 0.16	d : 0.16	h : 0.10	g : 0.07	f : 0.07	i : 0.05	! : 0.05	" : 0.03	# : 0.01	F : 0.01	' : 0.01	
c : 0.16	e : 0.14	d : 0.12	" : 0.07	g : 0.07	h : 0.07	f : 0.07	! : 0.05	i : 0.05	[ : 0.05	b : 0.01	$ : 0.01	= : 0.01	# : 0.01	F : 0.01	' : 0.01	
c : 0.14	d : 0.12	e : 0.12	" : 0.09	g : 0.07	! : 0.05	i : 0.05	b : 0.05	h : 0.05	f : 0.05	[ : 0.05	= : 0.03	$ : 0.01	a : 0.01	A : 0.01	: : 0.01	
[ : 0.23	c : 0.10	f : 0.09	g : 0.09	d : 0.09	e : 0.07	" : 0.05	b : 0.05	i : 0.03	a : 0.03	$ : 0.03	= : 0.03	h : 0.01	: : 0.01	! : 0.01	
b : 0.14	[ : 0.12	c : 0.12	e : 0.10	f : 0.09	g : 0.07	= : 0.07	d : 0.05	i : 0.03	" : 0.03	$ : 0.03	! : 0.03	a : 0.03	h : 0.01	
c : 0.14	b : 0.12	e : 0.12	d : 0.10	f : 0.09	g : 0.09	= : 0.07	[ : 0.07	! : 0.03	$ : 0.03	# : 0.03	i : 0.01	] : 0.01	" : 0.01	
e : 0.14	d : 0.12	! : 0.10	c : 0.10	= : 0.07	b : 0.07	f : 0.05	[ : 0.05	g : 0.05	# : 0.05	" : 0.05	% : 0.03	i : 0.01	a : 0.01	$ : 0.01	
e : 0.14	! : 0.12	d : 0.12	c : 0.10	b : 0.09	= : 0.07	f : 0.05	g : 0.05	# : 0.05	" : 0.05	% : 0.03	$ : 0.03	i : 0.01	a : 0.01	
e : 0.18	[ : 0.14	g : 0.10	c : 0.09	d : 0.09	# : 0.09	= : 0.07	f : 0.05	" : 0.05	% : 0.03	! : 0.03	b : 0.01	$ : 0.01	
c : 0.18	e : 0.14	g : 0.12	[ : 0.10	" : 0.10	d : 0.09	= : 0.07	# : 0.05	% : 0.03	b : 0.01	$ : 0.01	: : 0.01	a : 0.01	
c : 0.21	d : 0.12	g : 0.10	e : 0.10	" : 0.09	! : 0.09	= : 0.07	[ : 0.03	% : 0.03	# : 0.03	a : 0.01	b : 0.01	$ : 0.01	: : 0.01	
c : 0.20	! : 0.14	d : 0.10	" : 0.10	g : 0.10	e : 0.09	= : 0.07	% : 0.03	# : 0.03	a : 0.01	[ : 0.01	b : 0.01	$ : 0.01	: : 0.01	
d : 0.43	[ : 0.09	! : 0.09	g : 0.09	e : 0.09	c : 0.09	= : 0.05	b : 0.01	" : 0.01	a : 0.01	
d : 0.43	[ : 0.10	c : 0.09	g : 0.09	! : 0.09	e : 0.07	= : 0.05	b : 0.03	" : 0.01	
d : 0.40	c : 0.18	b : 0.16	g : 0.09	e : 0.07	! : 0.05	[ : 0.03	
d : 0.54	c : 0.16	b : 0.12	o : 0.05	e : 0.03	g : 0.03	a : 0.01	[ : 0.01	
o : 0.56	d : 0.21	c : 0.09	m : 0.05	e : 0.03	b : 0.01	n : 0.01	
o : 0.65	d : 0.16	m : 0.10	n : 0.03	e : 0.01	b : 0.01	
o : 0.67	d : 0.14	m : 0.12	n : 0.03	l : 0.01	
o : 0.67	l : 0.16	m : 0.12	n : 0.03	
o : 0.67	l : 0.16	m : 0.07	n : 0.03	g : 0.01	b : 0.01	c : 0.01	
o : 0.61	l : 0.14	e : 0.07	d : 0.03	b : 0.03	c : 0.03	n : 0.01	g : 0.01	m : 0.01	
d : 0.54	b : 0.12	o : 0.10	c : 0.09	e : 0.07	g : 0.03	a : 0.01	
d : 0.56	c : 0.14	b : 0.10	e : 0.07	] : 0.05	g : 0.03	o : 0.01	
d : 0.56	c : 0.16	] : 0.09	e : 0.07	b : 0.05	g : 0.03	a : 0.01	
d : 0.60	c : 0.12	e : 0.07	b : 0.05	] : 0.03	g : 0.03	3 : 0.03	= : 0.01	4 : 0.01	
2 : 0.34	] : 0.16	d : 0.10	3 : 0.10	g : 0.09	4 : 0.05	c : 0.05	= : 0.03	5 : 0.01	7 : 0.01	
2 : 0.36	3 : 0.12	d : 0.09	c : 0.09	g : 0.07	e : 0.07	4 : 0.05	= : 0.03	] : 0.03	a : 0.01	5 : 0.01	7 : 0.01	
c : 0.25	e : 0.16	d : 0.14	g : 0.10	3 : 0.09	= : 0.07	4 : 0.05	2 : 0.01	b : 0.01	5 : 0.01	7 : 0.01	] : 0.01	a : 0.01	
c : 0.27	e : 0.18	d : 0.12	] : 0.09	g : 0.09	= : 0.07	4 : 0.03	b : 0.03	a : 0.01	3 : 0.01	5 : 0.01	7 : 0.01	2 : 0.01	
c : 0.21	e : 0.20	g : 0.12	d : 0.12	= : 0.07	f : 0.05	] : 0.05	i : 0.03	2 : 0.03	5 : 0.01	7 : 0.01	b : 0.01	3 : 0.01	
e : 0.20	g : 0.12	d : 0.12	b : 0.10	] : 0.09	= : 0.09	f : 0.05	2 : 0.05	i : 0.03	c : 0.03	3 : 0.03	7 : 0.01	a : 0.01	
g : 0.14	b : 0.12	3 : 0.12	e : 0.12	= : 0.09	d : 0.07	c : 0.07	f : 0.05	] : 0.05	i : 0.03	a : 0.03	2 : 0.03	7 : 0.01	
] : 0.25	3 : 0.14	g : 0.10	= : 0.09	c : 0.09	e : 0.07	f : 0.05	b : 0.05	i : 0.03	d : 0.03	2 : 0.03	: : 0.01	
3 : 0.14	c : 0.12	g : 0.10	d : 0.09	= : 0.09	e : 0.09	b : 0.07	a : 0.07	f : 0.05	i : 0.03	2 : 0.03	h : 0.03	: : 0.01	] : 0.01	
c : 0.18	d : 0.10	e : 0.09	= : 0.09	2 : 0.09	g : 0.07	b : 0.07	] : 0.07	f : 0.05	3 : 0.05	i : 0.03	h : 0.03	: : 0.01	4 : 0.01	
c : 0.27	d : 0.10	e : 0.10	= : 0.09	2 : 0.09	g : 0.07	b : 0.05	h : 0.05	3 : 0.03	i : 0.03	] : 0.03	f : 0.01	4 : 0.01	
c : 0.27	e : 0.12	d : 0.12	h : 0.09	= : 0.07	2 : 0.05	f : 0.05	i : 0.03	b : 0.03	g : 0.03	] : 0.03	r : 0.01	3 : 0.01	4 : 0.01	
c : 0.16	] : 0.14	h : 0.10	e : 0.09	2 : 0.09	g : 0.05	d : 0.05	f : 0.05	i : 0.03	4 : 0.03	: : 0.03	b : 0.01	= : 0.01	r : 0.01	G : 0.01	7 : 0.01	3 : 0.01	9 : 0.01	

#score	774.7547263358971
#seq	55
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_CDS_m1_run2.txt

#BEAR
eeee[ccc[arrrrrrrrra]ccc]eeeee	chr6:31937062-31937312(+)$1	250	97	127	12.8554
::gggggggvvvvvvvvvvvvvgggggggC	chr16:279078-279345(-)$1	267	207	237	19.4069
iiiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr2:207634698-207634970(+)$1	272	91	121	20.0860
"""ccceeeeettttttttttteeeee444	chr5:147778546-147778806(+)$1	260	47	77	19.1780
!!ccc[dddduuuuuuuuuuuudddd]ccc	chr17:1580759-1580998(-)$1	239	140	170	19.8340
gg!!eeeee"""aooooooa333eeeee22	chr3:139092393-139092653(-)$1	260	106	136	9.3905
hhhhhhhhwwwwwwwwwwwwwwhhhhhhhh	chr8:48805692-48805933(-)$1	241	30	60	18.2982
==========rrrrrrrrr===========	chr1:31465081-31465346(-)$1	265	232	262	12.3649
eeeee!!bb!!bbrrrrrrrrrbb22bb22	chr11:62293136-62293424(-)$1	288	209	239	11.6701
f[eeeeebb!!arrrrrrrrra22bb]eee	chr20:45912178-45912427(-)$1	249	184	214	12.0710
ggggeeeeezzzzzzzzzzzzzzzzzeeee	chr7:5402239-5402489(-)$1	250	155	185	12.9299
ccc[eeeeevvvvvvvvvvvvveeeee22c	chr17:74732098-74732358(-)$1	260	18	48	21.9899
iiiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr16:11990430-11990691(-)$1	261	36	66	20.0860
:dddd!!bbvvvvvvvvvvvvvbb22dddd	chr2:232325152-232325375(-)$1	223	132	162	19.4256
ggggg[eeeeettttttttttteeeee22g	chr20:17600841-17601059(-)$1	218	131	161	19.2831
eee^^^^^^^^^^^^^^^^^^^^eeeee22	chr20:37153454-37153708(+)$1	254	190	220	17.7164
::gggggggvvvvvvvvvvvvvggggggg:	chr4:83347667-83347884(-)$1	217	89	119	19.6751
iiii!!eeeeettttttttttteeeee333	chr4:83348241-83348477(-)$1	236	125	155	19.8091
da[gggggggtttttttttttggggggg]a	chr17:80397923-80398200(+)$1	277	156	186	18.7259
!!ccc^^^^^^^^^^^^^^^^^^^^ccc33	chr16:18849518-18849808(-)$1	290	219	249	18.0686
GGGGeeeeexxxxxxxxxxxxxxxeeeee:	chr10:32326062-32326306(-)$1	244	32	62	14.9923
bb!!ffffffuuuuuuuuuuuuffffff22	chrX:53613674-53613914(-)$1	240	193	223	20.1597
dd[ffffffyyyyyyyyyyyyyyyyfffff	chr11:62284171-62284488(-)$1	317	179	209	18.1182
"""ccc[bb[bbssssssssssbb]bbccc	chr11:72423483-72423761(-)$1	278	233	263	11.9612
eeeee[cccvvvvvvvvvvvvvccc]eeee	chr3:185637074-185637362(-)$1	288	245	275	21.5838
:gggggggwwwwwwwwwwwwwwggggggg:	chr14:21484914-21485174(-)$1	260	208	238	20.1519
eegggggggrrrrrrrrrgggggggfffff	chr11:2972896-2973152(-)$1	256	70	100	10.5211
dd[a!!eeeeettttttttttteeeee22a	chr2:54872410-54872652(+)$1	242	42	72	19.0301
eeccc[ddddssssssssssdddd]ccc22	chr17:74717887-74718155(-)$1	268	87	117	12.6953
"""ccc^^^^^^^^^^^^^^^^^^^^^ccc	chr17:75494563-75494796(+)$1	233	46	76	17.0408
::ccceeeeeuuuuuuuuuuuueeeee22c	chr8:48761936-48762162(-)$1	226	120	150	19.3261
b^^^^^^^^^^^^^^^^^^^^bb]dddd22	chr11:62290705-62290942(-)$1	237	66	96	15.3023
+++ffffffuuuuuuuuuuuuffffff>>>	chr2:61192081-61192346(-)$1	265	28	58	17.5489
[eeeee^^^^^^^^^^^^^^^^^^eeeee]	chr11:62294339-62294593(-)$1	254	172	202	17.8199
:hhhhhhhhvvvvvvvvvvvvvhhhhhhhh	chr11:62286607-62286891(-)$1	284	251	281	17.9727
h[eeeeeddddtttttttttttdddd4444	chr2:101638026-101638301(-)$1	275	30	60	17.6359
!dddd[cccvvvvvvvvvvvvvcccdddd3	chrY:15026437-15026739(+)$1	302	67	97	21.2732
eeee^^^^^^^^^^^^^^^^^^^eeeee44	chr2:232319817-232320081(-)$1	264	147	177	17.6731
eeeebb^^^^^^^^^^^^^^^^^^^^bb22	chr2:232320009-232320275(-)$1	266	169	199	16.4834
eeee^^^^^^^^^^^^^^^^^^^eeeee22	chrX:53596563-53596821(-)$1	258	58	88	17.9314
gggggggxxxxxxxxxxxxxxxggggggg]	chr11:61079177-61079481(-)$1	304	44	74	17.9999
c!!ffffffvvvvvvvvvvvvvffffff22	chr1:249151582-249151903(-)$1	321	104	134	21.7413
#ffffff[avvvvvvvvvvvvva]ffffff	chr11:62300367-62300629(-)$1	262	54	84	20.9446
bb[ffffffwwwwwwwwwwwwwwffffff]	chr2:232326583-232326830(-)$1	247	207	237	20.5797
fff:eeeeewwwwwwwwwwwwwweeeee::	chr2:230693737-230694072(-)$1	335	153	183	18.5301
hhhhhhhh^^^^^^^^^^^^^^^^^^^hhh	chr3:58106866-58107093(+)$1	227	73	103	15.0846
+dddd!!bbvvvvvvvvvvvvvbb22dddd	chr2:232325096-232325352(-)$1	256	109	139	19.6899
bb[dddd[ccctttttttttttcccddddb	chr6:33179068-33179348(+)$1	280	123	153	17.2617
fffff!!bbvvvvvvvvvvvvvbb22ffff	chr6:7574859-7575088(+)$1	229	99	129	20.3206

#otherMatches

#Seq PSSM
GGCUGGUUGAGGUUGUAUAUGAGUGGGCCC	chr6:31937062-31937312(+)$1	250	97	127	12.8554
AGGCGCCGGGCCUUUGUCUAAGCCGGUGCG	chr16:279078-279345(-)$1	267	207	237	19.4069
UGUUUUUGUAAUUAUAUUUCAAUAGGAACG	chr2:207634698-207634970(+)$1	272	91	121	20.0860
AAUGUCUUUCCCGGAAGCUAAAGGAAGCAG	chr5:147778546-147778806(+)$1	260	47	77	19.1780
GUGAGUGGUUUUCUCUGUGUCCAACUUCUC	chr17:1580759-1580998(-)$1	239	140	170	19.8340
UGUCGCUUUGGGCUAUGAUGAAGGGAGCAU	chr3:139092393-139092653(-)$1	260	106	136	9.3905
GAAGGUGUCUCUUUUCUCAUCAACACCUUU	chr8:48805692-48805933(-)$1	241	30	60	18.2982
UGUGAACCUGUUAGUGAUGUAGGUUUACAG	chr1:31465081-31465346(-)$1	265	232	262	12.3649
CUGAAGAUGCCCAAGAUGAAAAUGCCCAAG	chr11:62293136-62293424(-)$1	288	209	239	11.6701
UUUCCAGGUGGCUUAUUAGAUGAAACUUUG	chr20:45912178-45912427(-)$1	249	184	214	12.0710
CGGGAGCUGAAGCCCAACAAGAAGUACAGC	chr7:5402239-5402489(-)$1	250	155	185	12.9299
GGAGUCCUCCCCCAGUGUCCAAGAGGGAAU	chr17:74732098-74732358(-)$1	260	18	48	21.9899
UGUCUUUCUUCAGUAGAAAAUGGAGAGACA	chr16:11990430-11990691(-)$1	261	36	66	20.0860
AAGGAAAUGGCCAAACAGAAAGCAGCUCCU	chr2:232325152-232325375(-)$1	223	132	162	19.4256
AGAGAACUCUUUCUCUUGUCCCGGGAGCCU	chr20:17600841-17601059(-)$1	218	131	161	19.2831
UGCUUCCUCCCCAGUUUCCUAAUGUAUCCU	chr20:37153454-37153708(+)$1	254	190	220	17.7164
UUGUUUCAGGUCAGGGCCAAAACUGGAACC	chr4:83347667-83347884(-)$1	217	89	119	19.6751
CGUGGCCGAGGUGAGACUUAAUUCUUGAAA	chr4:83348241-83348477(-)$1	236	125	155	19.8091
GUGUGUGUGGAAACUCGCAGGCCACACGGG	chr17:80397923-80398200(+)$1	277	156	186	18.7259
GGCAGACCUUAUUUUAAAAACUCUCCUGAA	chr16:18849518-18849808(-)$1	290	219	249	18.0686
AUAUUUCUUAUUAAUGUCAAACAAGAGAAC	chr10:32326062-32326306(-)$1	244	32	62	14.9923
CCUAGUUUCGUUUCUAUUUCCCUGGGACAU	chrX:53613674-53613914(-)$1	240	193	223	20.1597
CCGACUGUCCUCCUCUUCUAGCAAUGACAG	chr11:62284171-62284488(-)$1	317	179	209	18.1182
AAGGGGAUGAGGAAGAGGAUGACCACGCCU	chr11:72423483-72423761(-)$1	278	233	263	11.9612
CUGUUUGAAGCUCAUGAAAAUAUUCUAACG	chr3:185637074-185637362(-)$1	288	245	275	21.5838
ACUUCUGCUAUAACAAUAAACUGUAGAGGA	chr14:21484914-21485174(-)$1	260	208	238	20.1519
UCAUGUUUUGUAAACCUAAAAAUGUUUUUC	chr11:2972896-2973152(-)$1	256	70	100	10.5211
ACCGACGAGGUAGACAGCAAGCGCCUCACC	chr2:54872410-54872652(+)$1	242	42	72	19.0301
GUAAUUAGGUAUAGGAUCAAACCUUGUUUA	chr17:74717887-74718155(-)$1	268	87	117	12.6953
ACAUGCAGAACAUCAAGGACAUCACCAGCA	chr17:75494563-75494796(+)$1	233	46	76	17.0408
AACUGGUUGCGAAACAAUUGAAGCAACAUC	chr8:48761936-48762162(-)$1	226	120	150	19.3261
CUCCAUGCCUGACUUUGACCUGAACUUGAA	chr11:62290705-62290942(-)$1	237	66	96	15.3023
UUUGUAUGAAAUAUAUUUGAAUUAUAUCUA	chr2:61192081-61192346(-)$1	265	28	58	17.5489
AGGGGCCCCAAAGUUGAUGUAAAUGCCCCC	chr11:62294339-62294593(-)$1	254	172	202	17.8199
GAUGUUUGGAAAAAUGUACUUCCCAGAUGU	chr11:62286607-62286891(-)$1	284	251	281	17.9727
UUGUGUCCUGACAAAUGGACUUUCAGCAUU	chr2:101638026-101638301(-)$1	275	30	60	17.6359
CCCAUACUGAGUCAGAUAUAUACAGAUGGU	chrY:15026437-15026739(+)$1	302	67	97	21.2732
AAGCCACAAGGAAAGAAGACGAAGUUUGAA	chr2:232319817-232320081(-)$1	264	147	177	17.6731
GCACGCAGAGAUAAUGACACCACAUAGCAU	chr2:232320009-232320275(-)$1	266	169	199	16.4834
CUGGACCACCUGCUCCCACAUACCCAGAAU	chrX:53596563-53596821(-)$1	258	58	88	17.9314
GGAAGUGGGGGUUGGUGUAGGGUGCUUCUG	chr11:61079177-61079481(-)$1	304	44	74	17.9999
GUUGCCCUGGGGUUUGAGGGAACAGGGCUC	chr1:249151582-249151903(-)$1	321	104	134	21.7413
GUUCUCUGUAUCAGGUGCAAAGGGAGAGGA	chr11:62300367-62300629(-)$1	262	54	84	20.9446
GCAGCUGUCACUCCAGGCAAAAAGGCAGCA	chr2:232326583-232326830(-)$1	247	207	237	20.5797
AAGUGGAGCUAGUAAGUAAAAAUGUUCCUU	chr2:230693737-230694072(-)$1	335	153	183	18.5301
UUCACCUCAGCUUGUGUUUCUUUUCCAGGG	chr3:58106866-58107093(+)$1	227	73	103	15.0846
AAGGAAAUGGCCAAACAGAAAGCAGCUCCU	chr2:232325096-232325352(-)$1	256	109	139	19.6899
CUCUGGGAGGGGGAACGCUGGGCCCCCCAA	chr6:33179068-33179348(+)$1	280	123	153	17.2617
CAGGCUCACUGAGGAGGAAACUGUCUGCCU	chr6:7574859-7575088(+)$1	229	99	129	20.3206

#DB
((((.(((.(.........).))).)))))	chr6:31937062-31937312(+)$1	1	97	127	12.8554
..(((((((.............))))))))	chr16:279078-279345(-)$1	1	207	237	19.4069
(((((((((............)))))))))	chr2:207634698-207634970(+)$1	1	91	121	20.0860
...((((((((...........)))))...	chr5:147778546-147778806(+)$1	1	47	77	19.1780
..(((.((((............)))).)))	chr17:1580759-1580998(-)$1	1	140	170	19.8340
((..(((((...(......)...)))))..	chr3:139092393-139092653(-)$1	1	106	136	9.3905
((((((((..............))))))))	chr8:48805692-48805933(-)$1	1	30	60	18.2982
((((((((((.........)))))))))))	chr1:31465081-31465346(-)$1	1	232	262	12.3649
(((((..((..((.........))..))..	chr11:62293136-62293424(-)$1	1	209	239	11.6701
(.(((((((..(.........)..)).)))	chr20:45912178-45912427(-)$1	1	184	214	12.0710
))))(((((.................))))	chr7:5402239-5402489(-)$1	1	155	185	12.9299
(((.(((((.............)))))..)	chr17:74732098-74732358(-)$1	1	18	48	21.9899
(((((((((............)))))))))	chr16:11990430-11990691(-)$1	1	36	66	20.0860
.((((..((.............))..))))	chr2:232325152-232325375(-)$1	1	132	162	19.4256
(((((.(((((...........)))))..)	chr20:17600841-17601059(-)$1	1	131	161	19.2831
(((....................)))))..	chr20:37153454-37153708(+)$1	1	190	220	17.7164
..(((((((.............))))))).	chr4:83347667-83347884(-)$1	1	89	119	19.6751
((((..(((((...........)))))...	chr4:83348241-83348477(-)$1	1	125	155	19.8091
((.(((((((...........))))))).)	chr17:80397923-80398200(+)$1	1	156	186	18.7259
..(((....................)))..	chr16:18849518-18849808(-)$1	1	219	249	18.0686
(((((((((...............))))).	chr10:32326062-32326306(-)$1	1	32	62	14.9923
((..((((((............))))))..	chrX:53613674-53613914(-)$1	1	193	223	20.1597
((.((((((................)))))	chr11:62284171-62284488(-)$1	1	179	209	18.1182
...(((.((.((..........)).)))))	chr11:72423483-72423761(-)$1	1	233	263	11.9612
(((((.(((.............))).))))	chr3:185637074-185637362(-)$1	1	245	275	21.5838
.(((((((..............))))))).	chr14:21484914-21485174(-)$1	1	208	238	20.1519
))(((((((.........)))))))(((((	chr11:2972896-2973152(-)$1	1	70	100	10.5211
((.(..(((((...........)))))..)	chr2:54872410-54872652(+)$1	1	42	72	19.0301
(((((.((((..........)))).)))..	chr17:74717887-74718155(-)$1	1	87	117	12.6953
...(((.....................)))	chr17:75494563-75494796(+)$1	1	46	76	17.0408
..((((((((............)))))..)	chr8:48761936-48762162(-)$1	1	120	150	19.3261
(....................)).))))..	chr11:62290705-62290942(-)$1	1	66	96	15.3023
...((((((............))))))...	chr2:61192081-61192346(-)$1	1	28	58	17.5489
.(((((..................))))).	chr11:62294339-62294593(-)$1	1	172	202	17.8199
.((((((((.............))))))))	chr11:62286607-62286891(-)$1	1	251	281	17.9727
(.(((((((((...........))))....	chr2:101638026-101638301(-)$1	1	30	60	17.6359
.((((.(((.............))))))).	chrY:15026437-15026739(+)$1	1	67	97	21.2732
((((...................)))))..	chr2:232319817-232320081(-)$1	1	147	177	17.6731
((((((....................))..	chr2:232320009-232320275(-)$1	1	169	199	16.4834
((((...................)))))..	chrX:53596563-53596821(-)$1	1	58	88	17.9314
(((((((...............))))))).	chr11:61079177-61079481(-)$1	1	44	74	17.9999
(..((((((.............))))))..	chr1:249151582-249151903(-)$1	1	104	134	21.7413
.((((((.(.............).))))))	chr11:62300367-62300629(-)$1	1	54	84	20.9446
((.((((((..............)))))).	chr2:232326583-232326830(-)$1	1	207	237	20.5797
))).(((((..............)))))..	chr2:230693737-230694072(-)$1	1	153	183	18.5301
((((((((...................)))	chr3:58106866-58107093(+)$1	1	73	103	15.0846
.((((..((.............))..))))	chr2:232325096-232325352(-)$1	1	109	139	19.6899
((.((((.(((...........))))))))	chr6:33179068-33179348(+)$1	1	123	153	17.2617
(((((..((.............))..))))	chr6:7574859-7575088(+)$1	1	99	129	20.3206

#PSSM
e : 0.18	: : 0.12	g : 0.08	b : 0.08	i : 0.06	" : 0.06	! : 0.06	h : 0.06	f : 0.06	d : 0.06	c : 0.04	+ : 0.04	= : 0.02	G : 0.02	[ : 0.02	# : 0.02	
e : 0.20	g : 0.10	d : 0.10	: : 0.06	i : 0.06	" : 0.06	! : 0.06	h : 0.06	b : 0.06	f : 0.06	[ : 0.04	= : 0.02	c : 0.02	a : 0.02	G : 0.02	^ : 0.02	+ : 0.02	
e : 0.20	g : 0.14	c : 0.10	[ : 0.10	i : 0.06	" : 0.06	! : 0.06	h : 0.06	d : 0.06	f : 0.06	= : 0.02	G : 0.02	^ : 0.02	+ : 0.02	
e : 0.18	g : 0.16	c : 0.14	f : 0.12	d : 0.08	i : 0.06	h : 0.06	! : 0.04	^ : 0.04	= : 0.02	[ : 0.02	G : 0.02	a : 0.02	: : 0.02	
e : 0.20	g : 0.14	c : 0.14	f : 0.14	d : 0.08	^ : 0.08	h : 0.06	i : 0.04	! : 0.04	[ : 0.02	= : 0.02	b : 0.02	
e : 0.18	g : 0.12	! : 0.12	f : 0.12	[ : 0.10	^ : 0.10	c : 0.08	h : 0.06	i : 0.04	= : 0.02	b : 0.02	d : 0.02	
e : 0.24	^ : 0.16	g : 0.12	f : 0.12	! : 0.08	c : 0.06	d : 0.06	h : 0.06	i : 0.04	= : 0.02	[ : 0.02	
e : 0.20	^ : 0.16	b : 0.12	g : 0.10	f : 0.10	c : 0.06	d : 0.06	h : 0.06	i : 0.04	[ : 0.04	= : 0.02	x : 0.02	
e : 0.20	^ : 0.18	b : 0.12	f : 0.10	g : 0.08	d : 0.06	c : 0.06	i : 0.04	w : 0.04	[ : 0.02	= : 0.02	h : 0.02	x : 0.02	a : 0.02	
v : 0.22	^ : 0.18	e : 0.10	w : 0.08	u : 0.06	d : 0.06	! : 0.04	x : 0.04	a : 0.02	" : 0.02	= : 0.02	z : 0.02	g : 0.02	f : 0.02	y : 0.02	[ : 0.02	r : 0.02	c : 0.02	
v : 0.22	^ : 0.18	u : 0.12	e : 0.08	w : 0.08	r : 0.06	! : 0.04	x : 0.04	" : 0.02	z : 0.02	t : 0.02	y : 0.02	b : 0.02	s : 0.02	d : 0.02	c : 0.02	
v : 0.22	^ : 0.18	t : 0.14	u : 0.12	w : 0.08	r : 0.06	b : 0.04	x : 0.04	" : 0.02	a : 0.02	z : 0.02	y : 0.02	s : 0.02	
v : 0.22	^ : 0.18	t : 0.14	u : 0.12	r : 0.08	w : 0.08	x : 0.04	s : 0.04	a : 0.02	b : 0.02	z : 0.02	y : 0.02	
v : 0.22	^ : 0.18	t : 0.14	u : 0.12	r : 0.10	w : 0.08	x : 0.04	s : 0.04	o : 0.02	z : 0.02	y : 0.02	
v : 0.22	^ : 0.18	t : 0.14	u : 0.12	r : 0.10	w : 0.08	x : 0.04	s : 0.04	o : 0.02	z : 0.02	y : 0.02	
v : 0.22	^ : 0.18	t : 0.14	u : 0.12	r : 0.10	w : 0.08	x : 0.04	s : 0.04	o : 0.02	z : 0.02	y : 0.02	
v : 0.22	^ : 0.18	t : 0.14	u : 0.12	r : 0.10	w : 0.08	x : 0.04	s : 0.04	o : 0.02	z : 0.02	y : 0.02	
v : 0.22	^ : 0.18	t : 0.14	u : 0.12	r : 0.10	w : 0.08	x : 0.04	s : 0.04	o : 0.02	z : 0.02	y : 0.02	
v : 0.22	^ : 0.18	t : 0.14	u : 0.12	r : 0.08	w : 0.08	x : 0.04	s : 0.04	o : 0.02	z : 0.02	y : 0.02	g : 0.02	
v : 0.22	^ : 0.18	t : 0.14	u : 0.12	w : 0.08	a : 0.04	r : 0.04	x : 0.04	s : 0.04	= : 0.02	z : 0.02	y : 0.02	g : 0.02	
v : 0.22	^ : 0.18	t : 0.14	u : 0.12	w : 0.08	r : 0.04	x : 0.04	] : 0.02	3 : 0.02	= : 0.02	z : 0.02	y : 0.02	s : 0.02	g : 0.02	d : 0.02	
v : 0.22	^ : 0.16	t : 0.12	w : 0.08	u : 0.06	i : 0.04	g : 0.04	x : 0.04	c : 0.02	3 : 0.02	= : 0.02	r : 0.02	a : 0.02	z : 0.02	y : 0.02	s : 0.02	d : 0.02	b : 0.02	f : 0.02	
^ : 0.16	g : 0.12	e : 0.12	b : 0.12	c : 0.08	d : 0.06	f : 0.06	i : 0.04	h : 0.04	w : 0.04	3 : 0.02	= : 0.02	2 : 0.02	z : 0.02	x : 0.02	y : 0.02	a : 0.02	
e : 0.22	g : 0.12	b : 0.10	^ : 0.10	c : 0.08	f : 0.08	d : 0.06	i : 0.04	h : 0.04	] : 0.04	= : 0.02	2 : 0.02	z : 0.02	x : 0.02	y : 0.02	
e : 0.26	g : 0.12	f : 0.10	2 : 0.08	^ : 0.08	] : 0.06	d : 0.06	c : 0.06	i : 0.04	h : 0.04	= : 0.02	b : 0.02	z : 0.02	y : 0.02	
e : 0.28	f : 0.14	g : 0.10	d : 0.10	2 : 0.08	^ : 0.06	i : 0.04	h : 0.04	b : 0.04	c : 0.04	= : 0.02	z : 0.02	] : 0.02	
e : 0.32	f : 0.16	g : 0.10	d : 0.10	b : 0.06	i : 0.04	] : 0.04	h : 0.04	c : 0.04	^ : 0.04	= : 0.02	4 : 0.02	
e : 0.22	f : 0.14	g : 0.10	c : 0.10	d : 0.10	2 : 0.08	h : 0.06	i : 0.04	4 : 0.04	b : 0.04	= : 0.02	3 : 0.02	> : 0.02	
2 : 0.26	e : 0.12	f : 0.10	g : 0.08	d : 0.08	4 : 0.06	c : 0.06	h : 0.06	i : 0.04	3 : 0.04	= : 0.02	] : 0.02	> : 0.02	: : 0.02	
2 : 0.18	c : 0.10	e : 0.08	: : 0.08	f : 0.08	4 : 0.06	h : 0.06	3 : 0.06	] : 0.06	i : 0.04	d : 0.04	a : 0.04	C : 0.02	= : 0.02	g : 0.02	> : 0.02	b : 0.02	

#score	860.2406413820086
#seq	49
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_transcript_m2_run2.txt

#BEAR
ccc!!dddd"""bbmmmmbb333dddd]cc	chr16:87957611-87957897(-)$1	286	201	231	12.3711
c####a[ccc[cccmmmmccc]ccc]a444	chr7:157630225-157630529(-)$1	304	35	65	14.0305
!!ccciiiiiiiiimmmmiiiiiiiii22c	chr20:62550530-62550786(+)$1	256	50	80	12.0823
e:dddd"""eeeeemmmmeeeee4444ddd	chr20:62313679-62313944(+)$1	265	23	53	10.3458
ddd!!bb"""ddddmmmmdddd22bbdddd	chr14:23528288-23528517(-)$1	229	116	146	11.2409
fdddd!!ccc[cccmmmmccc]cccdddd]	chr8:121795825-121796111(-)$1	286	84	114	13.4447
$$$ccc[ccc[cccmmmmcccccc]ccc22	chr7:1973287-1973655(-)$1	368	249	279	12.6838
::eeeee[a!!cccmmmmccc22a]eeeee	chr17:20811734-20812073(+)$1	339	84	114	11.7825
ee[eeeee!!a[bbmmmmbb]a4444eeee	chr12:46765665-46765928(-)$1	263	144	174	12.0602
ddd[==========mmmm==========dd	chr20:2820860-2821126(-)$1	266	122	152	13.3285
!!ggggggg[ddddmmmmddddggggggg2	chr16:89588620-89588870(+)$1	250	43	73	11.2629
ee[ccc[gggggggmmmmgggggggccc22	chr1:53377136-53377420(-)$1	284	221	251	11.8602
FFF:ccc[a!!cccmmmmccc333a]cccg	chr16:24802721-24802990(+)$1	269	122	152	12.0410
!bbggggggg[cccmmmmccc]ggggggg]	chr6:167412764-167413112(+)$1	348	255	285	13.1913
c####gggggggccclllccc]ggggggg2	chr17:78555612-78555978(+)$1	366	101	131	10.3158
eee!!ccc"""cccmmmmcccccc22eeee	chr14:39736608-39736858(+)$1	250	56	86	14.0348
ddd[a"""bb[cccmmmmccc]bb333add	chr7:23454928-23455206(-)$1	278	82	112	13.8975
"""dddd[bb[abbmmmmbb]a]bb22ddd	chr8:610740-611102(-)$1	362	253	283	11.1945
eeee[bb[bb[cccmmmmccc]bb]bb333	chr3:32301146-32301453(+)$1	307	105	135	12.1823
e:dddd"""eeeeemmmmeeeee4444ddd	chr20:62313622-62313879(+)$1	257	19	49	10.3458
"bb[a[dddd!!bbmmmmbb22dddd]a]b	chr7:158198986-158199284(-)$1	298	31	61	10.5345
fff[dddd[bbcccmmmmccc333bb]ddd	chr20:42086969-42087186(+)$1	217	103	133	12.3400
ccc[bb####ddddmmmmdddd]bb]ccc]	chr2:101650027-101650296(-)$1	269	134	164	11.1316
[eeeee[a"""cccmmmmccc22a]eeeee	chr7:72861490-72861755(-)$1	265	42	72	13.8500
:::ddddccc[cccmmmmccc]ccc]dddd	chr19:1274547-1274761(+)$1	214	3	33	10.8216
eee[a"""bb[cccmmmmccc]bb333aee	chr7:23455006-23455271(-)$1	265	183	213	13.7685
cc[ddddgggggggmmmmggggggg333dd	chr20:36130273-36130682(-)$1	409	221	251	12.2564
ddd!!bb"""ddddmmmmdddd22bbdddd	chr14:23528234-23528478(-)$1	244	77	107	11.2409
dd[ccc[ccc[cccmmmmcccccc22ccc]	chr17:80212698-80212959(-)$1	261	46	76	13.4518
dddd!!a!!a[cccmmmmccc]a22a22dd	chr12:19592983-19593239(+)$1	256	102	132	13.9644
ddd"""ccc[ddddmmmmddddccc22ddd	chr17:27075949-27076270(+)$1	321	41	71	11.6762
ee!!==========mmmm==========]e	chr3:32303391-32303747(+)$1	356	314	344	13.3534
cc[a[dddd!!cccooooooccc22dddd]	chr13:114187820-114188154(+)$1	334	28	58	10.0267
[ccc[ccc"""cccmmmmccc333ccc]cc	chr2:70056989-70057298(+)$1	309	219	249	14.6313
ddd[eeeee!!ddddmmmmdddd4444eee	chr3:197334214-197334560(-)$1	346	23	53	10.1298
[ccc[dddd"""bbmmmmbb22ddddccc]	chr16:89432288-89432540(-)$1	252	183	213	11.6646
eeee"""gggggggmmmmgggggggeeeee	chr7:158277746-158278038(-)$1	292	254	284	11.9335
dddccc!!dddd[ammmma]ddddccc]dd	chr8:38643501-38643800(+)$1	299	199	229	10.8594
!!ccc[cccbbcccmmmmccc333bb]ccc	chr17:80190050-80190278(+)$1	228	80	110	12.9029
dd[aggggggg[bbmmmmbb]ggggggg]a	chr2:236579054-236579332(+)$1	278	85	115	11.5940
eeeeebbgggggggmmmmggggggg]bb22	chr21:47562125-47562344(-)$1	219	163	193	10.5818
dddddd[eeeeebbmmmmbb]eeeeedddd	chr3:184099255-184099512(+)$1	257	39	69	10.3895
[ggggggg"""cccmmmmccc]ggggggg]	chr6:33239948-33240199(+)$1	251	12	42	14.0375
ccc[eeeee!!cccooooooccc]eeeeec	chr18:67069995-67070297(+)$1	302	113	143	9.8623
[ggggggg"""cccmmmmcccggggggg22	chrX:20269340-20269616(-)$1	276	124	154	13.6223
!!ccc[a[ffffffmmmmffffff]a]ccc	chr12:72056719-72057048(-)$1	329	284	314	10.6677
ee"""eeeee[cccmmmmccceeeee]eee	chr6:117923173-117923507(-)$1	334	195	225	12.7577
"eeeee[ccc[cccmmmmccc]ccc]eeee	chr8:128848661-128848961(+)$1	300	152	182	13.6440
cbb[eeeee!!cccmmmmccc22eeeee]b	chr2:74709632-74709926(-)$1	294	174	204	12.3061
eeee[dddd"""bbmmmmbb]dddd4444e	chr17:53371888-53372151(+)$1	263	46	76	11.8716
eccc[eeeee!!bbmmmmbbeeeee]cccB	chr16:84215714-84216047(-)$1	333	193	223	10.4004
#dddd[bb"""cccmmmmccc333bb]ddd	chr2:238488377-238488638(-)$1	261	202	232	13.6983
ccc"""dddd[cccmmmmcccdddd4444c	chr5:176951951-176952255(-)$1	304	61	91	12.9759

#otherMatches

#Seq PSSM
AGCAGGGAUUUUUGCAUUCAUUUAUUCAGU	chr16:87957611-87957897(-)$1	286	201	231	12.3711
UAACAGGUGCAACAGACGUGUGGCGGCAAC	chr7:157630225-157630529(-)$1	304	35	65	14.0305
cugccgcaggcggagauuuuugccuguuug	chr20:62550530-62550786(+)$1	256	50	80	12.0823
CCCCAGCUAUGGAGAAGACUCCACACUCUG	chr20:62313679-62313944(+)$1	265	23	53	10.3458
CGGAGUCGGAGCACACCUGUGCGGGACCGG	chr14:23528288-23528517(-)$1	229	116	146	11.2409
ugguugguugaauccucggaugcagaaccu	chr8:121795825-121796111(-)$1	286	84	114	13.4447
GUGCCCUGGGCAGUUGCCGCUCCCCGGGAA	chr7:1973287-1973655(-)$1	368	249	279	12.6838
CAGAGAAACGACCUGGAAAGGAAGCUUCUC	chr17:20811734-20812073(+)$1	339	84	114	11.7825
AGCUGCCUGUGGACGGGUGUGCUUGAGGGC	chr12:46765665-46765928(-)$1	263	144	174	12.0602
GGUCUCUGCGGGGCGGGAGCUUUGCAGAAC	chr20:2820860-2821126(-)$1	266	122	152	13.3285
UUUUUAAGCCGAUUUAAAAAUUGUUUGAAU	chr16:89588620-89588870(+)$1	250	43	73	11.2629
GUGCCCACCAGCCUCCAGGGGUUGGGGGAA	chr1:53377136-53377420(-)$1	284	221	251	11.8602
GCUACAGGCAAACCUCCUGGUACAGGCUGG	chr16:24802721-24802990(+)$1	269	122	152	12.0410
GGCCGGGCCUGGCGGAUCCGCAGGGCUUGC	chr6:167412764-167413112(+)$1	348	255	285	13.1913
uggaagcagcuccccuuagggagaguugca	chr17:78555612-78555978(+)$1	366	101	131	10.3158
UGGAGGAGCCCGGGGUUACCCCUCAACCGU	chr14:39736608-39736858(+)$1	250	56	86	14.0348
CCGACUGACGGAGGGGGACCUGCGGAUGCG	chr7:23454928-23455206(-)$1	278	82	112	13.8975
auagcucauggccggcaacgagacagggag	chr8:610740-611102(-)$1	362	253	283	11.1945
AUUGAGGAGAGCACCACAGUGGUCACCACA	chr3:32301146-32301453(+)$1	307	105	135	12.1823
CCCCAGCUAUGGAGAAGACUCCACACUCUG	chr20:62313622-62313879(+)$1	257	19	49	10.3458
AUGAUGAUGCAGGGGGCUCCAGGCAUGACC	chr7:158198986-158199284(-)$1	298	31	61	10.5345
CUGCGGCGAGCGCGUGAUCGUAGAGCACGC	chr20:42086969-42087186(+)$1	217	103	133	12.3400
CCUGGGGAAAUGCUGCCUGGUAACCGAGGA	chr2:101650027-101650296(-)$1	269	134	164	11.1316
ACAGGAACUAUACUGAAGAGUCUGCUUCUG	chr7:72861490-72861755(-)$1	265	42	72	13.8500
UUCGGUGUGUGUUGGGUGCAGGGCAGCGCC	chr19:1274547-1274761(+)$1	214	3	33	10.8216
CCGACUGACGGAGGGGGACCUGCGGAUGCG	chr7:23455006-23455271(-)$1	265	183	213	13.7685
GCAGGCCCUUUCCAAAGGUGGGAGGUGAGG	chr20:36130273-36130682(-)$1	409	221	251	12.2564
CGGAGUCGGAGCACACCUGUGCGGGACCGG	chr14:23528234-23528478(-)$1	244	77	107	11.2409
CUCCGACGGCUCAGCUCACUGGCUUCUCGA	chr17:80212698-80212959(-)$1	261	46	76	13.4518
uggggacggcaaggagggccuggaggagcc	chr12:19592983-19593239(+)$1	256	102	132	13.9644
UGGAGGAGAGUGUGAAGCCACAUCUGGCCA	chr17:27075949-27076270(+)$1	321	41	71	11.6762
ucaguuuucuguggacugccacagaaaaag	chr3:32303391-32303747(+)$1	356	314	344	13.3534
UGAGAUCUGGGUAGUAUAUUCUAAACAGAA	chr13:114187820-114188154(+)$1	334	28	58	10.0267
GUCACCCUGACUCGGAGACGGACGAGGAUG	chr2:70056989-70057298(+)$1	309	219	249	14.6313
CUCCUGUGUAGCAUUACCGAAUGGAAAACA	chr3:197334214-197334560(-)$1	346	23	53	10.1298
gucacuuaugaaugggaacgaaaugaugag	chr16:89432288-89432540(-)$1	252	183	213	11.6646
ACACGGGCCUGCGGGCCGUUGCAGGGUGUC	chr7:158277746-158278038(-)$1	292	254	284	11.9335
AUCAUUAAGCCUGGUGUUUGAGGCAAUCGA	chr8:38643501-38643800(+)$1	299	199	229	10.8594
GGCCCCGGGCUCAGGCCACUGCACGGACCC	chr17:80190050-80190278(+)$1	228	80	110	12.9029
UCGCCCGCGUCCGGCAGCCCCGACGUGGAg	chr2:236579054-236579332(+)$1	278	85	115	11.5940
ggucuccggcuucacuccugaagucaggca	chr21:47562125-47562344(-)$1	219	163	193	10.5818
UCGGAGCGGCAGCCGAGCGGCCUGUCCUUC	chr3:184099255-184099512(+)$1	257	39	69	10.3895
GUCAGGGUUCUGGAAACGUCCUGCCCUGAG	chr6:33239948-33240199(+)$1	251	12	42	14.0375
GGACGAACCCACGGGAAAAGCUGCGGUUCU	chr18:67069995-67070297(+)$1	302	113	143	9.8623
agcccaggaguucgagaucggcuugggcaa	chrX:20269340-20269616(-)$1	276	124	154	13.6223
GUGUGUCACUAAAGUUCCCUUUAGCGUCAU	chr12:72056719-72057048(-)$1	329	284	314	10.6677
AUGUGGAUCUGCUCCUGGGAGAGAUCGAUC	chr6:117923173-117923507(-)$1	334	195	225	12.7577
GUUGGAGCUGGCCAGAACUGGGCAGAUCCA	chr8:128848661-128848961(+)$1	300	152	182	13.6440
UGCGGCCUGGAGGCGGGGGCCCGCAGGUGG	chr2:74709632-74709926(-)$1	294	174	204	12.3061
UGUACGAGCAAAGCAUCCGCAGCUCAGAAU	chr17:53371888-53372151(+)$1	263	46	76	11.8716
GUUCGGGCAGCUGGUCUACCCUGCUGGAGG	chr16:84215714-84216047(-)$1	333	193	223	10.4004
UGCUGCACCAUGCUGGAAAGCUCUGUCCAG	chr2:238488377-238488638(-)$1	261	202	232	13.6983
GCCCAGUUGGCAGCAGAAGCUCUAAAGCAG	chr5:176951951-176952255(-)$1	304	61	91	12.9759

#DB
(((..((((...((....))...)))).))	chr16:87957611-87957897(-)$1	1	201	231	12.3711
(....(.(((.(((....))).))).)...	chr7:157630225-157630529(-)$1	1	35	65	14.0305
..((((((((((((....)))))))))..)	chr20:62550530-62550786(+)$1	1	50	80	12.0823
).((((...(((((....)))))....)))	chr20:62313679-62313944(+)$1	1	23	53	10.3458
(((..((...((((....))))..))))))	chr14:23528288-23528517(-)$1	1	116	146	11.2409
(((((..(((.(((....))).))))))).	chr8:121795825-121796111(-)$1	1	84	114	13.4447
...(((.(((.(((....)))))).)))..	chr7:1973287-1973655(-)$1	1	249	279	12.6838
..(((((.(..(((....)))..).)))))	chr17:20811734-20812073(+)$1	1	84	114	11.7825
((.(((((..(.((....)).)....))))	chr12:46765665-46765928(-)$1	1	144	174	12.0602
(((.((((((((((....))))))))))))	chr20:2820860-2821126(-)$1	1	122	152	13.3285
..(((((((.((((....))))))))))).	chr16:89588620-89588870(+)$1	1	43	73	11.2629
((.(((.(((((((....))))))))))..	chr1:53377136-53377420(-)$1	1	221	251	11.8602
(((.(((.(..(((....)))...).)))(	chr16:24802721-24802990(+)$1	1	122	152	12.0410
.(((((((((.(((....))).))))))).	chr6:167412764-167413112(+)$1	1	255	285	13.1913
(....((((((((((...))).))))))).	chr17:78555612-78555978(+)$1	1	101	131	10.3158
(((..(((...(((....))))))..))))	chr14:39736608-39736858(+)$1	1	56	86	14.0348
(((.(...((.(((....))).))...)))	chr7:23454928-23455206(-)$1	1	82	112	13.8975
...((((.((.(((....)).).))..)))	chr8:610740-611102(-)$1	1	253	283	11.1945
((((.((.((.(((....))).)).))...	chr3:32301146-32301453(+)$1	1	105	135	12.1823
).((((...(((((....)))))....)))	chr20:62313622-62313879(+)$1	1	19	49	10.3458
.((.(.((((..((....))..)))).).)	chr7:158198986-158199284(-)$1	1	31	61	10.5345
(((.((((.(((((....)))...)).)))	chr20:42086969-42087186(+)$1	1	103	133	12.3400
(((.((....((((....)))).)).))).	chr2:101650027-101650296(-)$1	1	134	164	11.1316
.(((((.(...(((....)))..).)))))	chr7:72861490-72861755(-)$1	1	42	72	13.8500
...(((((((.(((....))).))).))))	chr19:1274547-1274761(+)$1	1	3	33	10.8216
(((.(...((.(((....))).))...)))	chr7:23455006-23455271(-)$1	1	183	213	13.7685
((.(((((((((((....)))))))...))	chr20:36130273-36130682(-)$1	1	221	251	12.2564
(((..((...((((....))))..))))))	chr14:23528234-23528478(-)$1	1	77	107	11.2409
((.(((.(((.(((....))))))..))).	chr17:80212698-80212959(-)$1	1	46	76	13.4518
((((..(..(.(((....))).)..)..))	chr12:19592983-19593239(+)$1	1	102	132	13.9644
(((...(((.((((....)))))))..)))	chr17:27075949-27076270(+)$1	1	41	71	11.6762
((..((((((((((....)))))))))).)	chr3:32303391-32303747(+)$1	1	314	344	13.3534
((.(.((((..(((......)))..)))).	chr13:114187820-114188154(+)$1	1	28	58	10.0267
.(((.(((...(((....)))...))).))	chr2:70056989-70057298(+)$1	1	219	249	14.6313
(((.(((((..((((....))))....)))	chr3:197334214-197334560(-)$1	1	23	53	10.1298
.(((.((((...((....))..))))))).	chr16:89432288-89432540(-)$1	1	183	213	11.6646
((((...(((((((....))))))))))))	chr7:158277746-158278038(-)$1	1	254	284	11.9335
((((((..((((.(....).))))))).))	chr8:38643501-38643800(+)$1	1	199	229	10.8594
..(((.((((((((....)))...)).)))	chr17:80190050-80190278(+)$1	1	80	110	12.9029
((.((((((((.((....)).))))))).)	chr2:236579054-236579332(+)$1	1	85	115	11.5940
((((((((((((((....))))))).))..	chr21:47562125-47562344(-)$1	1	163	193	10.5818
))((((.(((((((....)).)))))))))	chr3:184099255-184099512(+)$1	1	39	69	10.3895
.(((((((...(((....))).))))))).	chr6:33239948-33240199(+)$1	1	12	42	14.0375
(((.(((((..(((......))).))))))	chr18:67069995-67070297(+)$1	1	113	143	9.8623
.(((((((...(((....))))))))))..	chrX:20269340-20269616(-)$1	1	124	154	13.6223
..(((.(.((((((....)))))).).)))	chr12:72056719-72057048(-)$1	1	284	314	10.6677
((...(((((.(((....)))))))).)))	chr6:117923173-117923507(-)$1	1	195	225	12.7577
.(((((.(((.(((....))).))).))))	chr8:128848661-128848961(+)$1	1	152	182	13.6440
)((.(((((..(((....)))..))))).)	chr2:74709632-74709926(-)$1	1	174	204	12.3061
((((.((((...((....)).))))....)	chr17:53371888-53372151(+)$1	1	46	76	11.8716
)(((.(((((..((....))))))).))))	chr16:84215714-84216047(-)$1	1	193	223	10.4004
.((((.((...(((....)))...)).)))	chr2:238488377-238488638(-)$1	1	202	232	13.6983
(((...((((.(((....)))))))....)	chr5:176951951-176952255(-)$1	1	61	91	12.9759

#PSSM
e : 0.24	d : 0.20	c : 0.16	! : 0.09	[ : 0.09	" : 0.05	f : 0.03	: : 0.03	$ : 0.01	F : 0.01	# : 0.01	
d : 0.24	e : 0.22	c : 0.16	! : 0.07	: : 0.07	b : 0.05	# : 0.03	g : 0.03	$ : 0.01	F : 0.01	" : 0.01	f : 0.01	
d : 0.24	c : 0.18	e : 0.16	[ : 0.11	g : 0.05	b : 0.05	# : 0.03	" : 0.03	$ : 0.01	F : 0.01	f : 0.01	: : 0.01	! : 0.01	
c : 0.18	d : 0.16	[ : 0.16	e : 0.15	! : 0.09	g : 0.07	" : 0.05	# : 0.03	a : 0.03	: : 0.01	
d : 0.16	c : 0.15	e : 0.15	[ : 0.11	! : 0.09	g : 0.09	" : 0.07	a : 0.05	# : 0.03	= : 0.03	b : 0.01	
d : 0.20	e : 0.16	c : 0.13	g : 0.11	b : 0.09	" : 0.09	[ : 0.07	! : 0.03	= : 0.03	a : 0.01	i : 0.01	
d : 0.18	[ : 0.13	e : 0.13	g : 0.11	" : 0.09	b : 0.09	c : 0.09	! : 0.03	= : 0.03	a : 0.03	i : 0.01	# : 0.01	
c : 0.18	g : 0.18	d : 0.13	e : 0.13	" : 0.11	[ : 0.09	= : 0.03	! : 0.03	i : 0.01	# : 0.01	a : 0.01	b : 0.01	
" : 0.18	c : 0.15	g : 0.15	d : 0.13	e : 0.11	b : 0.07	a : 0.03	! : 0.03	= : 0.03	i : 0.01	[ : 0.01	# : 0.01	f : 0.01	
" : 0.20	! : 0.13	g : 0.13	c : 0.11	b : 0.11	e : 0.09	d : 0.05	= : 0.03	[ : 0.03	i : 0.01	# : 0.01	a : 0.01	f : 0.01	
[ : 0.26	" : 0.16	! : 0.15	d : 0.11	g : 0.11	e : 0.05	= : 0.03	b : 0.03	i : 0.01	a : 0.01	f : 0.01	
c : 0.49	d : 0.13	g : 0.09	" : 0.05	e : 0.05	[ : 0.03	= : 0.03	! : 0.03	i : 0.01	a : 0.01	f : 0.01	
c : 0.50	b : 0.16	d : 0.11	g : 0.07	e : 0.03	= : 0.03	i : 0.01	[ : 0.01	f : 0.01	
c : 0.50	b : 0.16	d : 0.11	g : 0.07	e : 0.03	= : 0.03	i : 0.01	a : 0.01	f : 0.01	
m : 0.92	o : 0.03	c : 0.01	d : 0.01	
m : 0.94	o : 0.03	l : 0.01	
m : 0.94	o : 0.03	l : 0.01	
m : 0.94	o : 0.03	l : 0.01	
c : 0.47	b : 0.16	d : 0.09	g : 0.07	e : 0.03	= : 0.03	o : 0.03	i : 0.01	m : 0.01	a : 0.01	f : 0.01	
c : 0.47	b : 0.16	d : 0.11	g : 0.07	e : 0.03	= : 0.03	o : 0.03	i : 0.01	] : 0.01	f : 0.01	
c : 0.50	d : 0.13	] : 0.09	g : 0.07	e : 0.05	= : 0.03	2 : 0.03	3 : 0.01	i : 0.01	f : 0.01	
] : 0.20	d : 0.16	3 : 0.11	g : 0.11	e : 0.09	c : 0.09	2 : 0.09	a : 0.03	= : 0.03	i : 0.01	f : 0.01	
c : 0.18	g : 0.18	3 : 0.11	d : 0.11	e : 0.09	2 : 0.09	b : 0.05	= : 0.03	] : 0.03	i : 0.01	4 : 0.01	a : 0.01	f : 0.01	
g : 0.18	c : 0.15	d : 0.11	3 : 0.09	b : 0.09	4 : 0.07	2 : 0.07	e : 0.07	a : 0.03	= : 0.03	i : 0.01	] : 0.01	f : 0.01	
g : 0.18	c : 0.13	b : 0.13	d : 0.09	] : 0.09	e : 0.09	4 : 0.07	2 : 0.07	= : 0.03	3 : 0.03	i : 0.01	a : 0.01	
] : 0.13	e : 0.13	4 : 0.11	b : 0.11	g : 0.11	d : 0.09	c : 0.07	2 : 0.07	3 : 0.05	= : 0.03	a : 0.03	i : 0.01	
c : 0.16	e : 0.15	d : 0.13	g : 0.11	] : 0.11	4 : 0.09	3 : 0.05	2 : 0.05	= : 0.03	b : 0.03	a : 0.01	i : 0.01	
d : 0.22	e : 0.18	c : 0.16	g : 0.11	] : 0.05	4 : 0.05	a : 0.05	2 : 0.03	= : 0.03	3 : 0.03	b : 0.01	
d : 0.32	e : 0.18	c : 0.16	2 : 0.09	g : 0.07	] : 0.07	4 : 0.05	3 : 0.01	
d : 0.28	e : 0.20	c : 0.13	] : 0.13	2 : 0.11	b : 0.03	4 : 0.01	g : 0.01	3 : 0.01	a : 0.01	B : 0.01	

#score	642.645665661251
#seq	53
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_UTR_m2_run2.txt

#BEAR
=====uuuuuuuuuuuu====	chr11:2152281-2152491(-)$1	210	58	79	23.6492
=====uuuuuuuuuuuu====	chr11:2152372-2152574(-)$1	202	141	162	23.6492
eeeeettttttttttteeeee	chr11:2153624-2153830(-)$1	206	144	165	26.1866
eeeeevvvvvvvvvvvvveee	chr20:33123140-33123413(+)$1	273	185	206	24.7258
eeeeettttttttttteeeee	chr11:2153486-2153722(-)$1	236	36	57	26.1866
eeeeeuuuuuuuuuuuueeee	chr11:2153246-2153458(-)$1	212	8	29	25.8693
""ccctttttttttttccc22	chr17:41844181-41844397(-)$1	216	182	203	22.1020
"""bbuuuuuuuuuuuubb33	chr11:2153224-2153427(-)$1	203	141	162	21.6987
=====uuuuuuuuuuuu====	chr11:2152259-2152463(-)$1	204	30	51	23.6492
eeeeettttttttttteeeee	chr11:2152596-2152802(-)$1	206	42	63	26.1866
=====uuuuuuuuuuuu====	chr11:2152404-2152613(-)$1	209	180	201	23.6492
eeeeettttttttttteeeee	chr11:2152657-2152871(-)$1	214	111	132	26.1866
eeeeeuuuuuuuuuuuueeee	chr11:2153365-2153570(-)$1	205	120	141	25.8693
eeeeevvvvvvvvvvvvveee	chr13:113539258-113539515(+)$1	257	195	216	24.7258
eeeeettttttttttteeeee	chr11:2152582-2152788(-)$1	206	28	49	26.1866
eeeeettttttttttteeeee	chr5:73935793-73936044(-)$1	251	80	101	26.1866
eeeeettttttttttteeeee	chr11:2153971-2154176(-)$1	205	69	90	26.1866
dddbbvvvvvvvvvvvvvbb]	chr12:123998121-123998386(-)$1	265	120	141	20.8430
dddyyyyyyyyyyyyyyyydd	chr18:34375177-34375472(-)$1	295	191	212	19.8782
eeeeeuuuuuuuuuuuueeee	chr11:2153390-2153596(-)$1	206	146	167	25.8693
eeeeettttttttttteeeee	chr11:2152652-2152857(-)$1	205	97	118	26.1866
eeeeeuuuuuuuuuuuueeee	chr11:2153293-2153513(-)$1	220	63	84	25.8693
gggguuuuuuuuuuuuggggg	chr2:71366009-71366289(+)$1	280	177	198	21.5840
eeeeeuuuuuuuuuuuueeee	chr11:2153401-2153606(-)$1	205	156	177	25.8693
eeeeettttttttttteeeee	chr11:2153558-2153765(-)$1	207	79	100	26.1866
eeeeettttttttttteeeee	chr11:2152705-2152913(-)$1	208	153	174	26.1866
eeeeettttttttttteeeee	chr11:2153594-2153802(-)$1	208	116	137	26.1866
eeeeettttttttttteeeee	chr11:2153602-2153808(-)$1	206	122	143	26.1866
eeeeettttttttttteeeee	chr11:2153976-2154186(-)$1	210	79	100	26.1866
eeeeettttttttttteeeee	chr11:2153990-2154197(-)$1	207	90	111	26.1866
=====uuuuuuuuuuuu====	chr11:2152378-2152604(-)$1	226	171	192	23.6492
eeeeettttttttttteeeee	chr11:2152648-2152852(-)$1	204	92	113	26.1866
eeeeeuuuuuuuuuuuueeee	chr11:2153258-2153466(-)$1	208	16	37	25.8693
=====vvvvvvvvvvvvv===	chr2:231913269-231913529(+)$1	260	26	47	22.6876
eeeeevvvvvvvvvvvvveee	chr2:231912048-231912313(+)$1	265	55	76	24.7258
eeeeettttttttttteeeee	chr11:2152426-2152628(-)$1	202	6	27	26.1866
eeeeewwwwwwwwwwwwwwee	chr20:20371648-20371915(-)$1	267	162	183	22.7176
eeeeeuuuuuuuuuuuueeee	chr11:2153416-2153641(-)$1	225	191	212	25.8693
=====uuuuuuuuuuuu====	chr11:2152314-2152518(-)$1	204	85	106	23.6492
b[ccctttttttttttccc]b	chr2:242275379-242275599(+)$1	220	47	68	21.9599
eeeeettttttttttteeeee	chr11:2153583-2153787(-)$1	204	101	122	26.1866
eeeeeuuuuuuuuuuuueeee	chr11:2153285-2153493(-)$1	208	43	64	25.8693
eeeeeuuuuuuuuuuuueeee	chr11:2153371-2153590(-)$1	219	140	161	25.8693
"""bbuuuuuuuuuuuubb33	chr11:2153236-2153438(-)$1	202	152	173	21.6987
cddddtttttttttttdddd3	chr11:2153447-2153656(-)$1	209	23	44	22.6386
=====uuuuuuuuuuuu====	chr11:2152318-2152527(-)$1	209	94	115	23.6492
=====uuuuuuuuuuuu====	chr11:2152337-2152542(-)$1	205	109	130	23.6492
"""bbuuuuuuuuuuuubb33	chr11:2153216-2153418(-)$1	202	132	153	21.6987
eeeeettttttttttteeeee	chr11:2152703-2152905(-)$1	202	145	166	26.1866
eeeeettttttttttteeeee	chr11:2152616-2152824(-)$1	208	64	85	26.1866
eeeeettttttttttteeeee	chr11:2153572-2153779(-)$1	207	93	114	26.1866
[ddddwwwwwwwwwwwwwwdd	chr2:242168178-242168492(+)$1	314	121	142	20.1921
eeeeettttttttttteeeee	chr11:2152729-2152933(-)$1	204	173	194	26.1866
eeeeeuuuuuuuuuuuueeee	chr11:2153410-2153616(-)$1	206	166	187	25.8693
ee[bbtttttttttttbbeee	chr4:1019530-1019847(+)$1	317	260	281	23.7381
eeeeettttttttttteeeee	chr11:2152691-2152898(-)$1	207	138	159	26.1866
eeeeettttttttttteeeee	chr4:17805911-17806195(-)$1	284	169	190	26.1866

#otherMatches

#Seq PSSM
CACCCGUAGGGUGGGCGGGGU	chr11:2152281-2152491(-)$1	210	58	79	23.6492
CACCCGUAGGGUGGGCGGGGU	chr11:2152372-2152574(-)$1	202	141	162	23.6492
GAGUCAAAUUGGCCUGGACUU	chr11:2153624-2153830(-)$1	206	144	165	26.1866
gagccacaucuccugcccggc	chr20:33123140-33123413(+)$1	273	185	206	24.7258
GAGUCAAAUUGGCCUGGACUU	chr11:2153486-2153722(-)$1	236	36	57	26.1866
GCAUGAAAACCAAAAUCCAUG	chr11:2153246-2153458(-)$1	212	8	29	25.8693
CAGGCAAAAUUAGAGCGCCAA	chr17:41844181-41844397(-)$1	216	182	203	22.1020
acagcacacacacaaacgcac	chr11:2153224-2153427(-)$1	203	141	162	21.6987
CACCCGUAGGGUGGGCGGGGU	chr11:2152259-2152463(-)$1	204	30	51	23.6492
UCAUGCGCAGCACAUACAUGA	chr11:2152596-2152802(-)$1	206	42	63	26.1866
CACCCGUAGGGUGGGCGGGGU	chr11:2152404-2152613(-)$1	209	180	201	23.6492
UCAUGCGCAGCACAUACAUGA	chr11:2152657-2152871(-)$1	214	111	132	26.1866
GCAUGAAAACCAAAAUCCAUG	chr11:2153365-2153570(-)$1	205	120	141	25.8693
cguguacacauaccacagaca	chr13:113539258-113539515(+)$1	257	195	216	24.7258
UCAUGCGCAGCACAUACAUGA	chr11:2152582-2152788(-)$1	206	28	49	26.1866
CUGCCCUCCCACAGCAGGCAG	chr5:73935793-73936044(-)$1	251	80	101	26.1866
CUGGGGCUUCUCCUGACCCAG	chr11:2153971-2154176(-)$1	205	69	90	26.1866
ACUCUUGUACUUUCUCUUAGC	chr12:123998121-123998386(-)$1	265	120	141	20.8430
GACUUCCUUCCUUUGCACUGU	chr18:34375177-34375472(-)$1	295	191	212	19.8782
GCAUGAAAACCAAAAUCCAUG	chr11:2153390-2153596(-)$1	206	146	167	25.8693
UCAUGCGCAGCACAUACAUGA	chr11:2152652-2152857(-)$1	205	97	118	26.1866
GCAUGAAAACCAAAAUCCAUG	chr11:2153293-2153513(-)$1	220	63	84	25.8693
acuuauaaacacagaagaguu	chr2:71366009-71366289(+)$1	280	177	198	21.5840
GCAUGAAAACCAAAAUCCAUG	chr11:2153401-2153606(-)$1	205	156	177	25.8693
GAGUCAAAUUGGCCUGGACUU	chr11:2153558-2153765(-)$1	207	79	100	26.1866
UCAUGCGCAGCACAUACAUGA	chr11:2152705-2152913(-)$1	208	153	174	26.1866
GAGUCAAAUUGGCCUGGACUU	chr11:2153594-2153802(-)$1	208	116	137	26.1866
GAGUCAAAUUGGCCUGGACUU	chr11:2153602-2153808(-)$1	206	122	143	26.1866
CUGGGGCUUCUCCUGACCCAG	chr11:2153976-2154186(-)$1	210	79	100	26.1866
CUGGGGCUUCUCCUGACCCAG	chr11:2153990-2154197(-)$1	207	90	111	26.1866
CACCCGUAGGGUGGGCGGGGU	chr11:2152378-2152604(-)$1	226	171	192	23.6492
UCAUGCGCAGCACAUACAUGA	chr11:2152648-2152852(-)$1	204	92	113	26.1866
GCAUGAAAACCAAAAUCCAUG	chr11:2153258-2153466(-)$1	208	16	37	25.8693
GCUCUAUGAUAUUAAGAAGGG	chr2:231913269-231913529(+)$1	260	26	47	22.6876
AGAGUGCAGCUGGGAAGAACU	chr2:231912048-231912313(+)$1	265	55	76	24.7258
AUAUCUAAGCAACUACGAUAU	chr11:2152426-2152628(-)$1	202	6	27	26.1866
GUUUCAUCUUCAGGCUCUAGA	chr20:20371648-20371915(-)$1	267	162	183	22.7176
GCAUGAAAACCAAAAUCCAUG	chr11:2153416-2153641(-)$1	225	191	212	25.8693
CACCCGUAGGGUGGGCGGGGU	chr11:2152314-2152518(-)$1	204	85	106	23.6492
UGUUGAAAUUGAAGAGCGAGG	chr2:242275379-242275599(+)$1	220	47	68	21.9599
GAGUCAAAUUGGCCUGGACUU	chr11:2153583-2153787(-)$1	204	101	122	26.1866
GCAUGAAAACCAAAAUCCAUG	chr11:2153285-2153493(-)$1	208	43	64	25.8693
GCAUGAAAACCAAAAUCCAUG	chr11:2153371-2153590(-)$1	219	140	161	25.8693
acagcacacacacaaacgcac	chr11:2153236-2153438(-)$1	202	152	173	21.6987
CCCCAGAAAUCACAGGUGGGC	chr11:2153447-2153656(-)$1	209	23	44	22.6386
CACCCGUAGGGUGGGCGGGGU	chr11:2152318-2152527(-)$1	209	94	115	23.6492
CACCCGUAGGGUGGGCGGGGU	chr11:2152337-2152542(-)$1	205	109	130	23.6492
acagcacacacacaaacgcac	chr11:2153216-2153418(-)$1	202	132	153	21.6987
UCAUGCGCAGCACAUACAUGA	chr11:2152703-2152905(-)$1	202	145	166	26.1866
UCAUGCGCAGCACAUACAUGA	chr11:2152616-2152824(-)$1	208	64	85	26.1866
GAGUCAAAUUGGCCUGGACUU	chr11:2153572-2153779(-)$1	207	93	114	26.1866
UGCCUACCACCUUGCCUCCAG	chr2:242168178-242168492(+)$1	314	121	142	20.1921
UCAUGCGCAGCACAUACAUGA	chr11:2152729-2152933(-)$1	204	173	194	26.1866
GCAUGAAAACCAAAAUCCAUG	chr11:2153410-2153616(-)$1	206	166	187	25.8693
cuagucacacacacacgcaga	chr4:1019530-1019847(+)$1	317	260	281	23.7381
UCAUGCGCAGCACAUACAUGA	chr11:2152691-2152898(-)$1	207	138	159	26.1866
GUAAGUGACUAAUACUUUUAC	chr4:17805911-17806195(-)$1	284	169	190	26.1866

#DB
(((((............))))	chr11:2152281-2152491(-)$1	1	58	79	23.6492
(((((............))))	chr11:2152372-2152574(-)$1	1	141	162	23.6492
(((((...........)))))	chr11:2153624-2153830(-)$1	1	144	165	26.1866
(((((.............)))	chr20:33123140-33123413(+)$1	1	185	206	24.7258
(((((...........)))))	chr11:2153486-2153722(-)$1	1	36	57	26.1866
(((((............))))	chr11:2153246-2153458(-)$1	1	8	29	25.8693
..(((...........)))..	chr17:41844181-41844397(-)$1	1	182	203	22.1020
...((............))..	chr11:2153224-2153427(-)$1	1	141	162	21.6987
(((((............))))	chr11:2152259-2152463(-)$1	1	30	51	23.6492
(((((...........)))))	chr11:2152596-2152802(-)$1	1	42	63	26.1866
(((((............))))	chr11:2152404-2152613(-)$1	1	180	201	23.6492
(((((...........)))))	chr11:2152657-2152871(-)$1	1	111	132	26.1866
(((((............))))	chr11:2153365-2153570(-)$1	1	120	141	25.8693
(((((.............)))	chr13:113539258-113539515(+)$1	1	195	216	24.7258
(((((...........)))))	chr11:2152582-2152788(-)$1	1	28	49	26.1866
(((((...........)))))	chr5:73935793-73936044(-)$1	1	80	101	26.1866
(((((...........)))))	chr11:2153971-2154176(-)$1	1	69	90	26.1866
(((((.............)).	chr12:123998121-123998386(-)$1	1	120	141	20.8430
(((................))	chr18:34375177-34375472(-)$1	1	191	212	19.8782
(((((............))))	chr11:2153390-2153596(-)$1	1	146	167	25.8693
(((((...........)))))	chr11:2152652-2152857(-)$1	1	97	118	26.1866
(((((............))))	chr11:2153293-2153513(-)$1	1	63	84	25.8693
((((............)))))	chr2:71366009-71366289(+)$1	1	177	198	21.5840
(((((............))))	chr11:2153401-2153606(-)$1	1	156	177	25.8693
(((((...........)))))	chr11:2153558-2153765(-)$1	1	79	100	26.1866
(((((...........)))))	chr11:2152705-2152913(-)$1	1	153	174	26.1866
(((((...........)))))	chr11:2153594-2153802(-)$1	1	116	137	26.1866
(((((...........)))))	chr11:2153602-2153808(-)$1	1	122	143	26.1866
(((((...........)))))	chr11:2153976-2154186(-)$1	1	79	100	26.1866
(((((...........)))))	chr11:2153990-2154197(-)$1	1	90	111	26.1866
(((((............))))	chr11:2152378-2152604(-)$1	1	171	192	23.6492
(((((...........)))))	chr11:2152648-2152852(-)$1	1	92	113	26.1866
(((((............))))	chr11:2153258-2153466(-)$1	1	16	37	25.8693
(((((.............)))	chr2:231913269-231913529(+)$1	1	26	47	22.6876
(((((.............)))	chr2:231912048-231912313(+)$1	1	55	76	24.7258
(((((...........)))))	chr11:2152426-2152628(-)$1	1	6	27	26.1866
(((((..............))	chr20:20371648-20371915(-)$1	1	162	183	22.7176
(((((............))))	chr11:2153416-2153641(-)$1	1	191	212	25.8693
(((((............))))	chr11:2152314-2152518(-)$1	1	85	106	23.6492
(.(((...........))).)	chr2:242275379-242275599(+)$1	1	47	68	21.9599
(((((...........)))))	chr11:2153583-2153787(-)$1	1	101	122	26.1866
(((((............))))	chr11:2153285-2153493(-)$1	1	43	64	25.8693
(((((............))))	chr11:2153371-2153590(-)$1	1	140	161	25.8693
...((............))..	chr11:2153236-2153438(-)$1	1	152	173	21.6987
(((((...........)))).	chr11:2153447-2153656(-)$1	1	23	44	22.6386
(((((............))))	chr11:2152318-2152527(-)$1	1	94	115	23.6492
(((((............))))	chr11:2152337-2152542(-)$1	1	109	130	23.6492
...((............))..	chr11:2153216-2153418(-)$1	1	132	153	21.6987
(((((...........)))))	chr11:2152703-2152905(-)$1	1	145	166	26.1866
(((((...........)))))	chr11:2152616-2152824(-)$1	1	64	85	26.1866
(((((...........)))))	chr11:2153572-2153779(-)$1	1	93	114	26.1866
.((((..............))	chr2:242168178-242168492(+)$1	1	121	142	20.1921
(((((...........)))))	chr11:2152729-2152933(-)$1	1	173	194	26.1866
(((((............))))	chr11:2153410-2153616(-)$1	1	166	187	25.8693
((.((...........)))))	chr4:1019530-1019847(+)$1	1	260	281	23.7381
(((((...........)))))	chr11:2152691-2152898(-)$1	1	138	159	26.1866
(((((...........)))))	chr4:17805911-17806195(-)$1	1	169	190	26.1866

#PSSM
e : 0.66	= : 0.15	" : 0.07	d : 0.03	g : 0.01	b : 0.01	c : 0.01	[ : 0.01	
e : 0.66	= : 0.15	" : 0.07	d : 0.07	g : 0.01	[ : 0.01	
e : 0.64	= : 0.15	d : 0.07	" : 0.05	c : 0.03	g : 0.01	[ : 0.01	
e : 0.64	= : 0.15	b : 0.08	c : 0.03	d : 0.03	y : 0.01	g : 0.01	
e : 0.64	= : 0.15	b : 0.08	c : 0.03	d : 0.03	y : 0.01	u : 0.01	
t : 0.47	u : 0.38	v : 0.08	w : 0.03	y : 0.01	
t : 0.47	u : 0.38	v : 0.08	w : 0.03	y : 0.01	
t : 0.47	u : 0.38	v : 0.08	w : 0.03	y : 0.01	
t : 0.47	u : 0.38	v : 0.08	w : 0.03	y : 0.01	
t : 0.47	u : 0.38	v : 0.08	w : 0.03	y : 0.01	
t : 0.47	u : 0.38	v : 0.08	w : 0.03	y : 0.01	
t : 0.47	u : 0.38	v : 0.08	w : 0.03	y : 0.01	
t : 0.47	u : 0.38	v : 0.08	w : 0.03	y : 0.01	
t : 0.47	u : 0.38	v : 0.08	w : 0.03	y : 0.01	
t : 0.47	u : 0.38	v : 0.08	w : 0.03	y : 0.01	
t : 0.47	u : 0.38	v : 0.08	w : 0.03	y : 0.01	
e : 0.40	u : 0.36	v : 0.08	c : 0.03	w : 0.03	y : 0.01	g : 0.01	d : 0.01	b : 0.01	
e : 0.57	= : 0.14	v : 0.08	b : 0.07	c : 0.03	w : 0.03	y : 0.01	g : 0.01	d : 0.01	
e : 0.64	= : 0.15	b : 0.07	c : 0.03	w : 0.03	y : 0.01	g : 0.01	d : 0.01	
e : 0.66	= : 0.15	3 : 0.05	d : 0.05	2 : 0.01	b : 0.01	g : 0.01	] : 0.01	
e : 0.66	= : 0.15	3 : 0.07	d : 0.03	2 : 0.01	] : 0.01	g : 0.01	b : 0.01	

#score	1407.7955755492155
#seq	57
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_transcript_m2_run2.txt

#BEAR
gccc"""cccuuuuuuuuuuuuccc333c	chrY:2715029-2715283(+)$1	254	204	233	23.6550
iccc"""cccuuuuuuuuuuuuccc333c	chrY:2715195-2715445(+)$1	250	38	67	23.6685
eebb[ddddvvvvvvvvvvvvvdddd444	chr6:32940946-32941203(+)$1	257	181	210	21.5618
feeeeeddddtttttttttttdddd]eee	chr9:140617917-140618215(+)$1	298	40	69	22.5018
:bb[fffffftttttttttttffffffbb	chr7:158368665-158368948(-)$1	283	179	208	20.7919
e:::fffffftttttttttttffffff:c	chr7:5395964-5396253(-)$1	289	101	130	18.9408
ddd[ddddvvvvvvvvvvvvvdddd]ddd	chr10:21990125-21990364(+)$1	239	39	68	20.5615
iia!!eeeeettttttttttteeeee22a	chr5:73935748-73936004(-)$1	256	35	64	23.1418
++ddddyyyyyyyyyyyyyyyydddd22f	chrY:2715581-2715828(+)$1	247	153	182	19.3925
++++fffffftttttttttttffffff]=	chr19:34882930-34883160(+)$1	230	138	167	20.5070
======!!bbvvvvvvvvvvvvvbb22==	chr16:24763211-24763468(+)$1	257	100	129	20.1585
++ffffffvvvvvvvvvvvvvffffff>>	chr22:50844505-50844808(+)$1	303	206	235	19.3891
ggccc[dddduuuuuuuuuuuuddddccc	chr7:157168575-157168878(+)$1	303	99	128	22.6636
c[bb[cccyyyyyyyyyyyyyyyyccc]b	chr15:25310857-25311161(+)$1	304	204	233	20.5784
iiiiiicccwwwwwwwwwwwwwwccc22i	chr11:65194413-65194692(+)$1	279	56	85	21.6119
dddd[dddduuuuuuuuuuuudddd]ddd	chr19:16986378-16986668(+)$1	290	4	33	22.4024
ii[aeeeeeuuuuuuuuuuuueeeee>>>	chr11:102287990-102288256(-)$1	266	68	97	22.3412
ggggffffffssssssssssffffff22g	chr13:20617532-20617816(+)$1	284	57	86	16.6113
gg[gggggggssssssssssggggggg]g	chr14:39736942-39737174(+)$1	232	186	215	16.1662
feeeeeddddtttttttttttdddd]eee	chr9:140617122-140617409(+)$1	287	241	270	22.5018
ffffff[cccuuuuuuuuuuuuccc]fff	chr19:34877571-34877817(+)$1	246	61	90	22.3610
####fffffftttttttttttffffffee	chr19:34882038-34882328(+)$1	290	245	274	22.1920
eeee[dddduuuuuuuuuuuudddd]eee	chr7:157167422-157167674(+)$1	252	29	58	22.8649
c####ddddyyyyyyyyyyyyyyyydddd	chr15:25229883-25230129(+)$1	246	155	184	20.0827
++++fffffftttttttttttffffff]=	chr19:34882839-34883130(+)$1	291	229	258	20.5070
fff::eeeeeuuuuuuuuuuuueeeee:F	chr2:148721187-148721439(-)$1	252	202	231	18.9982
heeeeexxxxxxxxxxxxxxxeeeee22h	chr4:2001916-2002166(-)$1	250	158	187	15.6675
eeeee[ddddtttttttttttdddd]eee	chr3:171847686-171847990(+)$1	304	74	103	22.6436
##bb[ddddssssssssssdddd]bb22c	chr19:877711-877970(-)$1	259	13	42	14.8704
cc!!ddddwwwwwwwwwwwwwwdddd22c	chr2:153255334-153255592(+)$1	258	167	196	21.7747
e[ccc!!cccvvvvvvvvvvvvvccc22c	chr3:171899874-171900256(+)$1	382	47	76	21.5518
ffff[ffffffssssssssssffffff]f	chr10:21994094-21994342(+)$1	248	65	94	16.0738
##eeeee[bbtttttttttttbb]eeeee	chr14:39836206-39836457(+)$1	251	117	146	21.1573
eeegggggggtttttttttttggggggg:	chr16:1125548-1125819(-)$1	271	140	169	21.0777
d[affffffuuuuuuuuuuuuffffff]a	chr1:2053400-2053656(+)$1	256	70	99	22.5239
[bb[eeeeevvvvvvvvvvvvveeeee]b	chr17:78287263-78287632(+)$1	369	104	133	21.1051
44dddddddduuuuuuuuuuuudddd:::	chr3:171763035-171763293(+)$1	258	77	106	19.2641
ccc[bb[ddddssssssssssdddd333b	chr18:74145778-74146073(-)$1	295	47	76	16.9711
IIdddd[ccctttttttttttccc]dddd	chr5:14404069-14404358(+)$1	289	24	53	19.6609
b!!bb[eeeeesssssssssseeeee]bb	chr14:39835635-39835890(+)$1	255	36	65	15.6855
BBggggggguuuuuuuuuuuuggggggg:	chr20:8360684-8360933(+)$1	249	65	94	19.8354
fffff[cccuuuuuuuuuuuuccc]ffff	chr19:34877475-34877736(+)$1	261	158	187	22.2388
ggg[ffffffyyyyyyyyyyyyyyyyfff	chr9:86594303-86594557(-)$1	254	83	112	19.1992
ddd####ccctttttttttttccc22ddd	chr11:65197215-65197437(+)$1	222	59	88	21.7098
ee####bbwwwwwwwwwwwwwwbb4444e	chr21:47564148-47564434(-)$1	286	204	233	20.2126
gggeeeeecccssssssssssccc]eeee	chr17:29632109-29632459(+)$1	350	290	319	16.5085
c[ccc[ddddtttttttttttdddd]ccc	chr7:5396116-5396512(-)$1	396	208	237	23.0911
""a[dddd[assssssssssadddd]a33	chr16:3763938-3764205(-)$1	267	91	120	18.0002
dddd[cccxxxxxxxxxxxxxxxccc333	chr8:9629461-9629764(+)$1	303	203	232	17.0820
:cccffffffssssssssssffffff]cc	chr20:34250295-34250543(-)$1	248	44	73	15.5621
Jccc[dddduuuuuuuuuuuuddddccca	chr13:20617726-20618014(+)$1	288	182	211	21.6757
eeee!!ddddtttttttttttdddd22ee	chr7:155461073-155461358(+)$1	285	57	86	22.7794

#otherMatches

#Seq PSSM
CUGGGACGUCAGUUAUGUCAGGGACACAC	chrY:2715029-2715283(+)$1	254	204	233	23.6550
CUGGGACGUCAGUUAUGUCAGGGACACAC	chrY:2715195-2715445(+)$1	250	38	67	23.6685
GGGAUUCCCAGAGAAGGGUAAAGGGAUCA	chr6:32940946-32941203(+)$1	257	181	210	21.5618
UGAGCCCGGGGUGUGUCCGUGUCUGUGGU	chr9:140617917-140618215(+)$1	298	40	69	22.5018
UUGACAGCAUAUGGAAUGGGGAUGUUGCA	chr7:158368665-158368948(-)$1	283	179	208	20.7919
UUGAGGGUCCUAGAGGUGACCGGACUCCC	chr7:5395964-5396253(-)$1	289	101	130	18.9408
uucaucaauuuuguuuaccuuuugaagaa	chr10:21990125-21990364(+)$1	239	39	68	20.5615
CGCCGCUGCCCUCCCACAGCAGGCAGAAG	chr5:73935748-73936004(-)$1	256	35	64	23.1418
UGGUAGGAUAAGGAGAUGGUAGCUGCAGA	chrY:2715581-2715828(+)$1	247	153	182	19.3925
AAGAUCUCAGUCUGUCAAUUUCUGAGGAG	chr19:34882930-34883160(+)$1	230	138	167	20.5070
UUGCUUGGGGGAAAGGGAGGGAACCAAGG	chr16:24763211-24763468(+)$1	257	100	129	20.1585
AGAGGCCUGGAGAGAGGUGAGAGGCCUGG	chr22:50844505-50844808(+)$1	303	206	235	19.3891
GUGGGUCCUGAAAUCAUGACAGCAGGCCU	chr7:157168575-157168878(+)$1	303	99	128	22.6636
CUGGCAGAGUAGUAGAAGUGUCCAUCUUC	chr15:25310857-25311161(+)$1	304	204	233	20.5784
ACUAAAGAAUUUGCCUUGUUUUUUUCCUU	chr11:65194413-65194692(+)$1	279	56	85	21.6119
cuggucugguuugguuuugguuuggucug	chr19:16986378-16986668(+)$1	290	4	33	22.4024
ccucccugguuaacuguauuccuagguau	chr11:102287990-102288256(-)$1	266	68	97	22.3412
gcuaggggguggaguggggaaccccuguu	chr13:20617532-20617816(+)$1	284	57	86	16.6113
UUGAACCUUGAAAGAACACCUGAGGUUGG	chr14:39736942-39737174(+)$1	232	186	215	16.1662
UGAGCCCGGGGUGUGUCUGUGUCUGUGGU	chr9:140617122-140617409(+)$1	287	241	270	22.5018
UCUCUCAAGCAAGGACUUUGUAGCUAGAG	chr19:34877571-34877817(+)$1	246	61	90	22.3610
CAAUAUCAGAGGAGGUAGGAAUCUGGUAC	chr19:34882038-34882328(+)$1	290	245	274	22.1920
GCUCUGGCUACCCCUCUAAAAGGCUUGAG	chr7:157167422-157167674(+)$1	252	29	58	22.8649
UUCUUCAUAAUUCCCCUUAAUUCUGUGUG	chr15:25229883-25230129(+)$1	246	155	184	20.0827
AAGAUCUCAGUCUGUCAAUUUCUGAGGAG	chr19:34882839-34883130(+)$1	291	229	258	20.5070
gccaggagcauagucaugugguugcuuag	chr2:148721187-148721439(-)$1	252	202	231	18.9982
uaguuauuucuuguuuucuguuagcuuug	chr4:2001916-2002166(-)$1	250	158	187	15.6675
UUUCUGCUUUGUGGUUggggagagggagg	chr3:171847686-171847990(+)$1	304	74	103	22.6436
ggcuggUGGGCAUUGACAACCACGGGAAG	chr19:877711-877970(-)$1	259	13	42	14.8704
GGGAGCCAAAGAGAGAAGAAUGUGGUGGC	chr2:153255334-153255592(+)$1	258	167	196	21.7747
CUAUUGUCCUACCAGAAUCAGCAAGGUAA	chr3:171899874-171900256(+)$1	382	47	76	21.5518
acagaugguacaugcagauaggugccagc	chr10:21994094-21994342(+)$1	248	65	94	16.0738
cuggggaacuugcagcacuuuggcucccu	chr14:39836206-39836457(+)$1	251	117	146	21.1573
CCAGGUGCAGAGGCCUCUGAGCUGCACCC	chr16:1125548-1125819(-)$1	271	140	169	21.0777
gguucaugguggugguuagggucguggug	chr1:2053400-2053656(+)$1	256	70	99	22.5239
gguggucauggaggugguggaggugaugg	chr17:78287263-78287632(+)$1	369	104	133	21.1051
AGUUGUCCCAUAUCUGUGUUUUUGGGAAG	chr3:171763035-171763293(+)$1	258	77	106	19.2641
CUGACCAGCUGGAAGAACGGACAGCAACG	chr18:74145778-74146073(-)$1	295	47	76	16.9711
gugcagguuguggugaggguguagguugu	chr5:14404069-14404358(+)$1	289	24	53	19.6609
guugggcugggugggccaguucccaggcc	chr14:39835635-39835890(+)$1	255	36	65	15.6855
acauuuaagucuuuaauccaucuugaguu	chr20:8360684-8360933(+)$1	249	65	94	19.8354
CUCUCAAGCAAGGACUUUGUAGCUAGAGA	chr19:34877475-34877736(+)$1	261	158	187	22.2388
GUUACCCGGCUGUUUUUGAUCUCGGUGCC	chr9:86594303-86594557(-)$1	254	83	112	19.1992
cauuuaaaccuUCUUCCCCGUGGUGUGUG	chr11:65197215-65197437(+)$1	222	59	88	21.7098
guagagaugagagauuauagaaauaaaga	chr21:47564148-47564434(-)$1	286	204	233	20.2126
GACUUUGGCAGGUGAUAUUGAUUGUCCAG	chr17:29632109-29632459(+)$1	350	290	319	16.5085
UGGGCGCCCGUGAUUGGCGGUUGGGAGCC	chr7:5396116-5396512(-)$1	396	208	237	23.0911
AGUGUCCAAGGCUGUUUUCACUGGAGGGG	chr16:3763938-3764205(-)$1	267	91	120	18.0002
uuagaccaggcaagaauuauuaauggaug	chr8:9629461-9629764(+)$1	303	203	232	17.0820
AUGCUUUUAGAUGUCCCUCCCUAAAAUGC	chr20:34250295-34250543(-)$1	248	44	73	15.5621
uggcugggugaggcaagcaaaaccugccu	chr13:20617726-20618014(+)$1	288	182	211	21.6757
ugcugauauuuuaugugaguuaauagaag	chr7:155461073-155461358(+)$1	285	57	86	22.7794

#DB
((((...(((............)))...)	chrY:2715029-2715283(+)$1	1	204	233	23.6550
((((...(((............)))...)	chrY:2715195-2715445(+)$1	1	38	67	23.6685
((((.((((.............))))...	chr6:32940946-32941203(+)$1	1	181	210	21.5618
((((((((((...........)))).)))	chr9:140617917-140618215(+)$1	1	40	69	22.5018
.((.((((((...........))))))))	chr7:158368665-158368948(-)$1	1	179	208	20.7919
)...((((((...........)))))).(	chr7:5395964-5396253(-)$1	1	101	130	18.9408
(((.((((.............)))).)))	chr10:21990125-21990364(+)$1	1	39	68	20.5615
(((..(((((...........)))))..)	chr5:73935748-73936004(-)$1	1	35	64	23.1418
..((((................))))..)	chrY:2715581-2715828(+)$1	1	153	182	19.3925
....((((((...........)))))).)	chr19:34882930-34883160(+)$1	1	138	167	20.5070
((((((..((.............))..))	chr16:24763211-24763468(+)$1	1	100	129	20.1585
..((((((.............))))))..	chr22:50844505-50844808(+)$1	1	206	235	19.3891
))(((.((((............)))))))	chr7:157168575-157168878(+)$1	1	99	128	22.6636
(.((.(((................))).)	chr15:25310857-25311161(+)$1	1	204	233	20.5784
(((((((((..............)))..)	chr11:65194413-65194692(+)$1	1	56	85	21.6119
((((.((((............)))).)))	chr19:16986378-16986668(+)$1	1	4	33	22.4024
((.((((((............)))))...	chr11:102287990-102288256(-)$1	1	68	97	22.3412
((((((((((..........))))))..)	chr13:20617532-20617816(+)$1	1	57	86	16.6113
((.(((((((..........))))))).)	chr14:39736942-39737174(+)$1	1	186	215	16.1662
((((((((((...........)))).)))	chr9:140617122-140617409(+)$1	1	241	270	22.5018
((((((.(((............))).)))	chr19:34877571-34877817(+)$1	1	61	90	22.3610
....((((((...........))))))))	chr19:34882038-34882328(+)$1	1	245	274	22.1920
((((.((((............)))).)))	chr7:157167422-157167674(+)$1	1	29	58	22.8649
(....((((................))))	chr15:25229883-25230129(+)$1	1	155	184	20.0827
....((((((...........)))))).)	chr19:34882839-34883130(+)$1	1	229	258	20.5070
)))..(((((............))))).)	chr2:148721187-148721439(-)$1	1	202	231	18.9982
((((((...............)))))..)	chr4:2001916-2002166(-)$1	1	158	187	15.6675
(((((.((((...........)))).)))	chr3:171847686-171847990(+)$1	1	74	103	22.6436
..((.((((..........)))).))..)	chr19:877711-877970(-)$1	1	13	42	14.8704
((..((((..............))))..)	chr2:153255334-153255592(+)$1	1	167	196	21.7747
(.(((..(((.............)))..)	chr3:171899874-171900256(+)$1	1	47	76	21.5518
((((.((((((..........)))))).)	chr10:21994094-21994342(+)$1	1	65	94	16.0738
..(((((.((...........)).)))))	chr14:39836206-39836457(+)$1	1	117	146	21.1573
)))(((((((...........))))))).	chr16:1125548-1125819(-)$1	1	140	169	21.0777
(.(((((((............)))))).)	chr1:2053400-2053656(+)$1	1	70	99	22.5239
.((.(((((.............))))).)	chr17:78287263-78287632(+)$1	1	104	133	21.1051
..))))((((............))))...	chr3:171763035-171763293(+)$1	1	77	106	19.2641
(((.((.((((..........))))...)	chr18:74145778-74146073(-)$1	1	47	76	16.9711
((((((.(((...........))).))))	chr5:14404069-14404358(+)$1	1	24	53	19.6609
(..((.(((((..........))))).))	chr14:39835635-39835890(+)$1	1	36	65	15.6855
(((((((((............))))))).	chr20:8360684-8360933(+)$1	1	65	94	19.8354
(((((.(((............))).))))	chr19:34877475-34877736(+)$1	1	158	187	22.2388
(((.((((((................)))	chr9:86594303-86594557(-)$1	1	83	112	19.1992
(((....(((...........)))..)))	chr11:65197215-65197437(+)$1	1	59	88	21.7098
((....((..............))....)	chr21:47564148-47564434(-)$1	1	204	233	20.2126
(((((((((((..........))).))))	chr17:29632109-29632459(+)$1	1	290	319	16.5085
(.(((.((((...........)))).)))	chr7:5396116-5396512(-)$1	1	208	237	23.0911
..(.((((.(..........))))).)..	chr16:3763938-3764205(-)$1	1	91	120	18.0002
((((.(((...............)))...	chr8:9629461-9629764(+)$1	1	203	232	17.0820
.(((((((((..........)))))).))	chr20:34250295-34250543(-)$1	1	44	73	15.5621
((((.((((............)))))))(	chr13:20617726-20618014(+)$1	1	182	211	21.6757
((((..((((...........))))..))	chr7:155461073-155461358(+)$1	1	57	86	22.7794

#PSSM
e : 0.15	g : 0.11	f : 0.11	d : 0.09	c : 0.09	i : 0.07	+ : 0.07	# : 0.05	: : 0.03	= : 0.01	h : 0.01	[ : 0.01	4 : 0.01	I : 0.01	b : 0.01	B : 0.01	" : 0.01	J : 0.01	
e : 0.17	c : 0.11	g : 0.09	d : 0.07	+ : 0.07	[ : 0.07	f : 0.07	# : 0.07	i : 0.05	b : 0.03	: : 0.01	= : 0.01	4 : 0.01	I : 0.01	! : 0.01	B : 0.01	" : 0.01	
c : 0.15	e : 0.15	d : 0.13	b : 0.09	f : 0.09	g : 0.07	a : 0.05	# : 0.05	+ : 0.03	[ : 0.03	! : 0.03	: : 0.01	= : 0.01	i : 0.01	
e : 0.15	c : 0.13	[ : 0.11	d : 0.09	f : 0.09	b : 0.07	g : 0.07	# : 0.07	: : 0.03	! : 0.03	+ : 0.03	= : 0.01	i : 0.01	a : 0.01	
f : 0.23	[ : 0.15	e : 0.15	d : 0.11	c : 0.05	g : 0.05	# : 0.05	" : 0.03	! : 0.03	b : 0.03	= : 0.01	i : 0.01	: : 0.01	
d : 0.23	f : 0.23	e : 0.17	[ : 0.09	g : 0.05	" : 0.03	c : 0.03	! : 0.03	# : 0.03	= : 0.01	i : 0.01	b : 0.01	
d : 0.30	f : 0.21	e : 0.13	c : 0.07	g : 0.05	[ : 0.05	" : 0.03	! : 0.03	y : 0.01	x : 0.01	# : 0.01	b : 0.01	
d : 0.32	f : 0.21	c : 0.19	e : 0.11	g : 0.05	y : 0.01	! : 0.01	x : 0.01	[ : 0.01	b : 0.01	
d : 0.26	f : 0.19	c : 0.17	e : 0.09	g : 0.05	v : 0.03	y : 0.03	b : 0.03	x : 0.03	w : 0.03	[ : 0.01	
f : 0.17	d : 0.15	c : 0.13	u : 0.13	v : 0.07	e : 0.05	y : 0.05	w : 0.05	b : 0.03	g : 0.03	x : 0.03	s : 0.01	a : 0.01	
t : 0.28	u : 0.24	v : 0.11	s : 0.09	y : 0.07	w : 0.05	x : 0.03	f : 0.01	d : 0.01	e : 0.01	c : 0.01	
t : 0.28	u : 0.24	s : 0.17	v : 0.11	y : 0.07	w : 0.05	x : 0.03	
t : 0.28	u : 0.24	s : 0.17	v : 0.11	y : 0.07	w : 0.05	x : 0.03	
t : 0.28	u : 0.24	s : 0.17	v : 0.11	y : 0.07	w : 0.05	x : 0.03	
t : 0.28	u : 0.24	s : 0.17	v : 0.11	y : 0.07	w : 0.05	x : 0.03	
t : 0.28	u : 0.24	s : 0.17	v : 0.11	y : 0.07	w : 0.05	x : 0.03	
t : 0.28	u : 0.24	s : 0.17	v : 0.11	y : 0.07	w : 0.05	x : 0.03	
t : 0.28	u : 0.24	s : 0.17	v : 0.11	y : 0.07	w : 0.05	x : 0.03	
t : 0.28	u : 0.24	s : 0.17	v : 0.11	y : 0.07	w : 0.05	x : 0.03	
t : 0.28	u : 0.24	s : 0.15	v : 0.11	y : 0.07	w : 0.05	x : 0.03	d : 0.01	
t : 0.28	u : 0.24	v : 0.11	y : 0.07	s : 0.07	w : 0.05	f : 0.03	x : 0.03	g : 0.01	d : 0.01	a : 0.01	
d : 0.23	f : 0.19	u : 0.11	v : 0.07	e : 0.07	y : 0.07	c : 0.07	w : 0.05	g : 0.05	b : 0.01	x : 0.01	
d : 0.32	f : 0.19	c : 0.13	e : 0.11	y : 0.05	g : 0.05	v : 0.03	b : 0.03	w : 0.01	x : 0.01	
d : 0.30	c : 0.19	f : 0.19	e : 0.11	y : 0.05	g : 0.05	b : 0.03	] : 0.03	
d : 0.30	f : 0.19	c : 0.13	e : 0.13	g : 0.05	] : 0.05	b : 0.03	y : 0.03	2 : 0.01	4 : 0.01	
f : 0.21	] : 0.17	e : 0.15	d : 0.13	c : 0.09	3 : 0.05	2 : 0.05	g : 0.05	b : 0.01	y : 0.01	4 : 0.01	
f : 0.21	2 : 0.19	e : 0.15	d : 0.09	3 : 0.07	c : 0.07	g : 0.05	4 : 0.03	] : 0.03	> : 0.01	: : 0.01	a : 0.01	
e : 0.15	2 : 0.15	] : 0.13	3 : 0.09	d : 0.09	c : 0.07	: : 0.05	f : 0.05	4 : 0.03	b : 0.03	> : 0.03	g : 0.03	= : 0.01	
c : 0.17	e : 0.17	b : 0.09	d : 0.09	f : 0.09	a : 0.05	= : 0.05	: : 0.05	> : 0.03	g : 0.03	3 : 0.03	4 : 0.01	i : 0.01	F : 0.01	h : 0.01	

#score	1054.077430126356
#seq	52
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_CDS_m2_run2.txt

#BEAR
ccc!!dddd!!cccooooooccc22dddd2	chr1:11115756-11116074(-)$1	318	1	31	10.6679
ebb$$$$$ddddoooooodddd666666bb	chr6:26124418-26124686(+)$1	268	66	96	12.8549
cc%%%%%%ddddoooooodddd4444ccc4	chr4:77969582-77969825(-)$1	243	61	91	13.1844
=========!!bboooooobb333======	chr19:18308097-18308398(-)$1	301	84	114	12.7305
!!bb####ddddoooooodddd333bb333	chr3:13359048-13359347(-)$1	299	147	177	16.2122
c!!eeeee[cccooooooccceeeee]ccc	chr11:65422139-65422532(-)$1	393	299	329	12.7628
[dddd!!cccooooooccc]dddd333ggg	chr7:150773045-150773338(+)$1	293	88	118	12.1895
fffff[dddd[cccooooooccc22dddd3	chr19:40873539-40873806(+)$1	267	84	114	10.4571
eeccc[ccc[bbnnnnnbb]ccc333ccc]	chr1:14107158-14107516(+)$1	358	244	274	9.9206
:eeeee[eeeeeooooooeeeee22eeeee	chr3:33907764-33908131(+)$1	367	255	285	12.0900
bbccc!!ddddooooooddddccc]bb444	chr15:72491796-72492109(-)$1	313	187	217	12.8810
ggggg####bboooooobb22ggggggg]c	chr19:34887384-34887651(+)$1	267	141	171	11.0635
[dddd[ffffffooooooffffff]ddddc	chr3:183960225-183960527(-)$1	302	242	272	11.4141
:dddd!!eeeeeooooooeeeee22dddd:	chr17:80708481-80708857(+)$1	376	58	88	11.8538
c####gggggggooooooggggggg4444c	chrX:153219503-153219793(-)$1	290	31	61	14.5645
e[bb!!ccccccooooooccc]ccc22bb3	chrX:153284547-153284788(-)$1	241	121	151	13.9111
bb"""ccc[ddddoooooodddd333ccc3	chr6:31762692-31762956(-)$1	264	49	79	14.1390
fffbb"""ddddoooooodddd4444bb]f	chr11:63743678-63743950(+)$1	272	160	190	14.7352
$$$$$eeeee[bboooooobbeeeee4444	chr12:124826414-124826720(-)$1	306	48	78	11.4038
eeee"""eeeeeooooooeeeee>>>>>>>	chr6:31606754-31607015(-)$1	261	86	116	14.8137
!!ccc[eeeeeooooooeeeeeccc22ccc	chr12:120637073-120637311(-)$1	238	4	34	12.6782
ffff"""eeeeeooooooeeeee4444fff	chr11:8008807-8009085(+)$1	278	21	51	15.4256
eeeee####cccooooooccc333eeeeec	chr1:93645614-93645885(-)$1	271	232	262	14.0408
!!ccc!!eeeeeooooooeeeee333ccc]	chrX:55035642-55035858(-)$1	216	77	107	15.9615
eeee"""ddddoooooodddd]eeeee333	chr16:204222-204446(+)$1	224	86	116	13.4272
iiii####ddddoooooodddd22iiiiii	chr5:126112976-126113303(+)$1	327	77	107	14.8269
ee"""a####bboooooobb4444a22eee	chr19:58905944-58906193(+)$1	249	125	155	13.9531
===="""ccc[aooooooa]ccc333====	chr11:63743596-63743878(+)$1	282	17	47	16.9482
:ccc!!ffffffooooooffffff22ccc:	chr12:54686871-54687181(-)$1	310	190	220	11.5240
ddd!!ccc"""bboooooobb]ccc22ddd	chr7:150643878-150644162(-)$1	284	253	283	10.9551
####ccc!!cccmmmmccc]ccc333ccc4	chrX:140994944-140995244(+)$1	300	112	142	10.4230
ddd####eeeeeooooooeeeee4444ddd	chr12:56530927-56531192(+)$1	265	215	245	15.5511
eee####eeeeeooooooeeeee55555ee	chr11:5290798-5291006(-)$1	208	29	59	12.9803
eee"""dddd[aooooooa]dddd55555e	chr11:64535090-64535336(-)$1	246	10	40	12.3256
a[ggggggg[bboooooobb]ggggggg]a	chr8:144899173-144899418(-)$1	245	0	30	11.9445
ccc####cccbboooooobb]ccc4444cc	chr16:227304-227539(+)$1	235	166	196	15.4751
[eeeee!!ddddoooooodddd]eeeeebb	chr5:137756505-137756752(+)$1	247	2	32	12.7004
!!ddddffffffooooooffffff4444dd	chrX:48771303-48771569(-)$1	266	173	203	12.6698
!!eeeee[bb[aooooooa]bbeeeee22c	chr19:59061728-59061976(+)$1	248	87	117	11.3146
ffffff!!ddddoooooodddd22ffffff	chrX:55039859-55040104(-)$1	245	117	147	12.4415
"ccc####cccqqqqqqqqccc4444ccc3	chr1:171526658-171526928(+)$1	270	39	69	10.4300
$$bb!!a[ddddoooooodddd]a22bb44	chr20:36758468-36758728(-)$1	260	18	48	14.5119
ffff[ccc[cccoooooocccccc]fffff	chr3:184038625-184038880(+)$1	255	146	176	12.7247
!!dddd[cccooooooccc]dddd333eee	chr4:1986434-1986652(-)$1	218	132	162	11.5912
iiiiiiiiicccooooooccc88888888i	chr11:117152611-117152931(+)$1	320	60	90	12.3176
bb$$$$$ddddooooooddddbb4444bb]	chr12:49445384-49445626(-)$1	242	152	182	13.1096
ffff[gggggggooooooggggggg>>>>>	chr16:85688296-85688535(+)$1	239	48	78	12.8604
:bbiiiiiiiiiooooooiiiiiiiii]bb	chr17:40947044-40947318(+)$1	274	168	198	11.3008

#otherMatches

#Seq PSSM
GCCAGGGUGAGCCACAGGCCUGGAGCACUg	chr1:11115756-11116074(-)$1	318	1	31	10.6679
GGCAAAGCUCGCGCCAAAGCGAAAUCCCGC	chr6:26124418-26124686(+)$1	268	66	96	12.8549
UCUACUCUGCAGUCUUCCCUGCCUCUGAAU	chr4:77969582-77969825(-)$1	243	61	91	13.1844
AGCAGGUGCCACCGCACCAGGACUGCGCCU	chr19:18308097-18308398(-)$1	301	84	114	12.7305
CAGCCUAUGCCUCCCACUAGGCCGCGUGAA	chr3:13359048-13359347(-)$1	299	147	177	16.2122
UGCCCCCAAGCCCACCCAGGCUGGGGAAGG	chr11:65422139-65422532(-)$1	393	299	329	12.7628
UGCAGCUGCUCUGCCUGGCCCUGCUCUGGG	chr7:150773045-150773338(+)$1	293	88	118	12.1895
UCCUGAGGGCCUGGACUUCCCCAAUGCCUC	chr19:40873539-40873806(+)$1	267	84	114	10.4571
AGCCCCUGAUGUCUGCCGCCUCACCCGGGC	chr1:14107158-14107516(+)$1	358	244	274	9.9206
UGUCUGCUCAGCAGCUCAGCUGAUUCAGAU	chr3:33907764-33908131(+)$1	367	255	285	12.0900
ACGCUUGUAGAACUCACUCUGGGCUGUAAC	chr15:72491796-72492109(-)$1	313	187	217	12.8810
GACCCAGCACCCCAUACGGAAGGGUCUGCA	chr19:34887384-34887651(+)$1	267	141	171	11.0635
UCAGGACCUGAGUCUACCCUCAGGACCUGG	chr3:183960225-183960527(-)$1	302	242	272	11.4141
ACCAGCUGUUUAACUACCUGAACCACUGGA	chr17:80708481-80708857(+)$1	376	58	88	11.8538
CUUCCACUGGCACCACCAUGUCGGUCAGCG	chrX:153219503-153219793(-)$1	290	31	61	14.5645
CUCCACCUUCCUCUCCCCAGGUAAGAGGGC	chrX:153284547-153284788(-)$1	241	121	151	13.9111
GGUCCCGGAUGGGGAGGAGCCCACCCCCGC	chr6:31762692-31762956(-)$1	264	49	79	14.1390
GCCCAUCCUGGUCAUGUUACUGCAUUUGUG	chr11:63743678-63743950(+)$1	272	160	190	14.7352
CCAUCAGGCCUAGGUAUGGCUGGCCUCACA	chr12:124826414-124826720(-)$1	306	48	78	11.4038
GGCCUUUGCUGAUGAUCCUUAGCUCUUUGC	chr6:31606754-31607015(-)$1	261	86	116	14.8137
UCUGGCUUGUUUUUUGUAGCAACUAUUGGA	chr12:120637073-120637311(-)$1	238	4	34	12.6782
UUCAGCCUAUCAAGCUCCUGAUAUUCAUGA	chr11:8008807-8009085(+)$1	278	21	51	15.4256
CCAGCCCAUGCCCCUGAAGGCCUCGCUGGA	chr1:93645614-93645885(-)$1	271	232	262	14.0408
UUCAGAGAAGCUGCUGCUGGCUUGGACUGC	chrX:55035642-55035858(-)$1	216	77	107	15.9615
CUUCCCCGCCGACUUCACGGCCGAGGCCCA	chr16:204222-204446(+)$1	224	86	116	13.4272
UGCUUCUCCGUUCCUCUAAACGCCAGCGUC	chr5:126112976-126113303(+)$1	327	77	107	14.8269
AUUAAGAAGAAGGACGAGCUGGAGCGUGUG	chr19:58905944-58906193(+)$1	249	125	155	13.9531
UCUGCUGCCUGGGAACUGCAAGGACUUAGA	chr11:63743596-63743878(+)$1	282	17	47	16.9482
UACUCCUAUGGCAACAUGGCCAUACCAGUC	chr12:54686871-54687181(-)$1	310	190	220	11.5240
AGCCCAAACCUGCUUUGCUGCCUUUCUGCU	chr7:150643878-150644162(-)$1	284	253	283	10.9551
UCUUCUCUCCAGAGCCCUGUGAGCAUCUGC	chrX:140994944-140995244(+)$1	300	112	142	10.4230
CAGUUUGGGACUGAGGUGAGUCUAUAUCUG	chr12:56530927-56531192(+)$1	265	215	245	15.5511
AAGUUGAUUGGGAAAGUCCUCAAGAUUUUU	chr11:5290798-5291006(-)$1	208	29	59	12.9803
UCUCACGUAGUCUCUCAUGUCUACCACCCA	chr11:64535090-64535336(-)$1	246	10	40	12.3256
GGUCUGGGCACAACCCUCUGAGCCCAGGGC	chr8:144899173-144899418(-)$1	245	0	30	11.9445
UUCCUGCACCCGUACCCCCGUGGUCUUUGA	chr16:227304-227539(+)$1	235	166	196	15.4751
CUGUUGCUGGGUCCCACUGCCUCCAACAAC	chr5:137756505-137756752(+)$1	247	2	32	12.7004
ccuggccuggccCCCAAUGGUCAGAAGAGC	chrX:48771303-48771569(-)$1	266	173	203	12.6698
GACACCAAGUUCUCUGCUGUGCUGGUGGAG	chr19:59061728-59061976(+)$1	248	87	117	11.3146
GGGGUGAAGAGCUCCUGCGCUUGGCACCCU	chrX:55039859-55040104(-)$1	245	117	147	12.4415
cagucucagcuucaguuccagccucuacuu	chr1:171526658-171526928(+)$1	270	39	69	10.4300
AUGGGCCUCCACAAGCUGGUGGUGAACUUC	chr20:36758468-36758728(-)$1	260	18	48	14.5119
GUCCGGCCAGGUAAGUAAGCCGGUGGGACG	chr3:184038625-184038880(+)$1	255	146	176	12.7247
CCCAGCCUGGAACCAGCCAAGCUGCCUGCC	chr4:1986434-1986652(-)$1	218	132	162	11.5912
CAUUGGGCAGGUCACAAUGCCCAUGGUUAU	chr11:117152611-117152931(+)$1	320	60	90	12.3176
ACCGCCUGAGGAAUCUCCCUUGUCCCCACC	chr12:49445384-49445626(-)$1	242	152	182	13.1096
CAGGAGCAGGUGUGCACUCACCUGUCCCCA	chr16:85688296-85688535(+)$1	239	48	78	12.8604
CUCUGGCUAGUGCCUUCUCACUGGCUGUGA	chr17:40947044-40947318(+)$1	274	168	198	11.3008

#DB
(((..((((..(((......)))..)))).	chr1:11115756-11116074(-)$1	1	1	31	10.6679
(((.....((((......))))......))	chr6:26124418-26124686(+)$1	1	66	96	12.8549
((......((((......))))....))).	chr4:77969582-77969825(-)$1	1	61	91	13.1844
(((((((((..((......))...))))))	chr19:18308097-18308398(-)$1	1	84	114	12.7305
..((....((((......))))...))...	chr3:13359048-13359347(-)$1	1	147	177	16.2122
(..(((((.(((......)))))))).)))	chr11:65422139-65422532(-)$1	1	299	329	12.7628
.((((..(((......))).))))...)))	chr7:150773045-150773338(+)$1	1	88	118	12.1895
(((((.((((.(((......)))..)))).	chr19:40873539-40873806(+)$1	1	84	114	10.4571
(((((.(((.((.....)).)))...))).	chr1:14107158-14107516(+)$1	1	244	274	9.9206
.(((((.(((((......)))))..)))))	chr3:33907764-33908131(+)$1	1	255	285	12.0900
(((((..((((......))))))).))...	chr15:72491796-72492109(-)$1	1	187	217	12.8810
(((((....((......))..))))))).)	chr19:34887384-34887651(+)$1	1	141	171	11.0635
.((((.((((((......)))))).)))))	chr3:183960225-183960527(-)$1	1	242	272	11.4141
.((((..(((((......)))))..)))).	chr17:80708481-80708857(+)$1	1	58	88	11.8538
(....(((((((......)))))))....)	chrX:153219503-153219793(-)$1	1	31	61	14.5645
(.((..((((((......))).)))..)).	chrX:153284547-153284788(-)$1	1	121	151	13.9111
((...(((.((((......))))...))).	chr6:31762692-31762956(-)$1	1	49	79	14.1390
(((((...((((......))))....)).)	chr11:63743678-63743950(+)$1	1	160	190	14.7352
.....(((((.((......)))))))....	chr12:124826414-124826720(-)$1	1	48	78	11.4038
((((...(((((......))))).......	chr6:31606754-31607015(-)$1	1	86	116	14.8137
..(((.(((((......))))))))..)))	chr12:120637073-120637311(-)$1	1	4	34	12.6782
((((...(((((......)))))....)))	chr11:8008807-8009085(+)$1	1	21	51	15.4256
(((((....(((......)))...))))))	chr1:93645614-93645885(-)$1	1	232	262	14.0408
..(((..(((((......)))))...))).	chrX:55035642-55035858(-)$1	1	77	107	15.9615
((((...((((......)))).)))))...	chr16:204222-204446(+)$1	1	86	116	13.4272
((((....((((......))))..))))))	chr5:126112976-126113303(+)$1	1	77	107	14.8269
((...(....((......))....)..)))	chr19:58905944-58906193(+)$1	1	125	155	13.9531
((((...(((.(......).)))...))))	chr11:63743596-63743878(+)$1	1	17	47	16.9482
.(((..((((((......))))))..))).	chr12:54686871-54687181(-)$1	1	190	220	11.5240
(((..(((...((......)).)))..)))	chr7:150643878-150644162(-)$1	1	253	283	10.9551
....(((..(((....))).)))...))).	chrX:140994944-140995244(+)$1	1	112	142	10.4230
(((....(((((......)))))....)))	chr12:56530927-56531192(+)$1	1	215	245	15.5511
(((....(((((......))))).....))	chr11:5290798-5291006(-)$1	1	29	59	12.9803
(((...((((.(......).)))).....)	chr11:64535090-64535336(-)$1	1	10	40	12.3256
(.(((((((.((......)).))))))).)	chr8:144899173-144899418(-)$1	1	0	30	11.9445
(((....(((((......)).)))....))	chr16:227304-227539(+)$1	1	166	196	15.4751
.(((((..((((......)))).)))))))	chr5:137756505-137756752(+)$1	1	2	32	12.7004
..((((((((((......))))))....))	chrX:48771303-48771569(-)$1	1	173	203	12.6698
..(((((.((.(......).)))))))..)	chr19:59061728-59061976(+)$1	1	87	117	11.3146
((((((..((((......))))..))))))	chrX:55039859-55040104(-)$1	1	117	147	12.4415
.(((....(((........)))....))).	chr1:171526658-171526928(+)$1	1	39	69	10.4300
..((..(.((((......)))).)..))..	chr20:36758468-36758728(-)$1	1	18	48	14.5119
((((.(((.(((......)))))).)))))	chr3:184038625-184038880(+)$1	1	146	176	12.7247
..((((.(((......))).))))...)))	chr4:1986434-1986652(-)$1	1	132	162	11.5912
((((((((((((......)))........)	chr11:117152611-117152931(+)$1	1	60	90	12.3176
((.....((((......))))))....)).	chr12:49445384-49445626(-)$1	1	152	182	13.1096
((((.(((((((......))))))).....	chr16:85688296-85688535(+)$1	1	48	78	12.8604
.(((((((((((......))))))))).))	chr17:40947044-40947318(+)$1	1	168	198	11.3008

#PSSM
e : 0.18	! : 0.12	f : 0.12	c : 0.10	: : 0.08	[ : 0.06	b : 0.06	= : 0.04	$ : 0.04	i : 0.04	d : 0.04	g : 0.02	# : 0.02	a : 0.02	" : 0.02	
e : 0.18	! : 0.14	f : 0.12	c : 0.10	b : 0.10	d : 0.10	= : 0.04	# : 0.04	[ : 0.04	$ : 0.04	i : 0.04	g : 0.02	
c : 0.16	e : 0.16	d : 0.14	f : 0.12	b : 0.10	= : 0.04	g : 0.04	# : 0.04	" : 0.04	$ : 0.04	i : 0.04	% : 0.02	! : 0.02	
e : 0.14	c : 0.12	d : 0.10	f : 0.10	# : 0.10	b : 0.08	$ : 0.06	" : 0.06	i : 0.06	! : 0.04	= : 0.04	g : 0.04	% : 0.02	
# : 0.14	" : 0.14	! : 0.10	e : 0.10	d : 0.10	c : 0.10	$ : 0.06	f : 0.04	g : 0.04	[ : 0.04	i : 0.04	% : 0.02	= : 0.02	b : 0.02	
# : 0.16	! : 0.14	" : 0.12	e : 0.10	[ : 0.08	c : 0.08	d : 0.06	g : 0.06	$ : 0.04	i : 0.04	% : 0.02	= : 0.02	a : 0.02	f : 0.02	
# : 0.18	! : 0.12	c : 0.12	" : 0.10	e : 0.08	d : 0.06	f : 0.06	g : 0.06	$ : 0.04	[ : 0.04	i : 0.04	% : 0.02	= : 0.02	a : 0.02	
e : 0.20	c : 0.18	d : 0.12	# : 0.12	f : 0.06	g : 0.06	! : 0.06	[ : 0.04	i : 0.04	$ : 0.02	% : 0.02	= : 0.02	" : 0.02	
d : 0.29	e : 0.18	c : 0.14	[ : 0.06	# : 0.06	f : 0.06	g : 0.06	i : 0.04	= : 0.02	" : 0.02	! : 0.02	b : 0.02	
d : 0.29	c : 0.22	e : 0.18	f : 0.06	! : 0.04	[ : 0.04	b : 0.04	g : 0.04	# : 0.02	" : 0.02	i : 0.02	
d : 0.25	e : 0.16	c : 0.14	[ : 0.10	b : 0.10	f : 0.06	! : 0.04	o : 0.04	g : 0.04	" : 0.02	i : 0.02	
d : 0.18	c : 0.16	b : 0.14	o : 0.14	e : 0.14	f : 0.06	a : 0.06	g : 0.04	q : 0.02	i : 0.02	
o : 0.81	b : 0.06	c : 0.04	n : 0.02	d : 0.02	m : 0.02	q : 0.02	
o : 0.89	c : 0.04	n : 0.02	m : 0.02	q : 0.02	
o : 0.93	n : 0.02	m : 0.02	q : 0.02	
o : 0.93	n : 0.02	m : 0.02	q : 0.02	
o : 0.89	c : 0.06	n : 0.02	q : 0.02	
o : 0.79	c : 0.06	d : 0.06	b : 0.04	e : 0.02	q : 0.02	
d : 0.22	c : 0.16	e : 0.16	o : 0.12	b : 0.10	f : 0.06	a : 0.06	g : 0.04	q : 0.02	i : 0.02	
d : 0.25	e : 0.16	] : 0.14	b : 0.12	c : 0.12	f : 0.06	o : 0.04	g : 0.04	2 : 0.02	i : 0.02	
d : 0.31	c : 0.22	e : 0.16	b : 0.08	f : 0.06	g : 0.04	] : 0.04	2 : 0.02	4 : 0.02	i : 0.02	
d : 0.25	e : 0.20	c : 0.18	g : 0.08	f : 0.06	] : 0.06	3 : 0.04	b : 0.04	4 : 0.02	8 : 0.02	i : 0.02	
c : 0.22	e : 0.22	4 : 0.08	d : 0.08	g : 0.08	3 : 0.06	f : 0.06	2 : 0.04	] : 0.04	6 : 0.02	8 : 0.02	b : 0.02	i : 0.02	
3 : 0.16	4 : 0.14	2 : 0.12	c : 0.12	e : 0.10	g : 0.08	d : 0.06	f : 0.06	6 : 0.02	> : 0.02	5 : 0.02	a : 0.02	8 : 0.02	i : 0.02	
4 : 0.16	3 : 0.16	2 : 0.12	e : 0.12	g : 0.08	] : 0.06	c : 0.06	i : 0.04	5 : 0.04	6 : 0.02	= : 0.02	> : 0.02	a : 0.02	f : 0.02	8 : 0.02	
4 : 0.18	e : 0.14	3 : 0.14	2 : 0.12	d : 0.08	b : 0.04	g : 0.04	> : 0.04	i : 0.04	5 : 0.04	f : 0.04	6 : 0.02	= : 0.02	8 : 0.02	
c : 0.14	4 : 0.14	e : 0.10	d : 0.08	b : 0.08	2 : 0.08	= : 0.04	3 : 0.04	g : 0.04	> : 0.04	i : 0.04	5 : 0.04	f : 0.04	6 : 0.02	] : 0.02	8 : 0.02	
c : 0.18	d : 0.12	e : 0.10	4 : 0.10	b : 0.08	g : 0.06	f : 0.06	= : 0.04	3 : 0.04	> : 0.04	5 : 0.04	6 : 0.02	i : 0.02	2 : 0.02	8 : 0.02	] : 0.02	
c : 0.20	d : 0.14	b : 0.10	e : 0.10	4 : 0.08	] : 0.06	f : 0.06	= : 0.04	3 : 0.04	> : 0.04	g : 0.02	i : 0.02	5 : 0.02	2 : 0.02	8 : 0.02	
c : 0.16	3 : 0.12	4 : 0.10	e : 0.10	f : 0.08	b : 0.06	] : 0.06	d : 0.06	= : 0.04	: : 0.04	> : 0.04	i : 0.04	2 : 0.02	g : 0.02	a : 0.02	

#score	620.2644619779732
#seq	48
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF777FHS_FUS_UTR_m3_run2.txt

#BEAR
dddd[a[cccqqqqqqqqccc]a]ddd	chr12:31478523-31478836(-)$1	313	260	287	16.2135
b[bb[eeeeeqqqqqqqqeeeee]bb]	chr17:7476378-7476677(+)$1	299	269	296	15.5655
e!!dddd[bbqqqqqqqqbb22dddd]	chr19:1881759-1882085(-)$1	326	151	178	14.4594
==========ssssssssss=======	chr3:23851852-23852198(+)$1	346	247	274	10.6942
hhh!!eeeeeqqqqqqqqeeeee22hh	chr19:1416408-1416692(+)$1	284	193	220	15.8362
i####bb!!aqqqqqqqqa22bb22ii	chr19:50168401-50168663(-)$1	262	181	208	15.0920
[bb"""ddddqqqqqqqqdddd4444b	chr18:3451490-3451757(+)$1	267	231	258	15.9599
hhhhh[ddddqqqqqqqqdddd]hhhh	chr1:2326208-2326543(+)$1	335	171	198	14.7747
eeeeeeeeeeqqqqqqqqeeeee333e	chr11:64073967-64074286(+)$1	319	242	269	15.9886
dd[ccccccaqqqqqqqqa]ccc]ccc	chr8:101962484-101962780(-)$1	296	170	197	16.1408
ffbb[a[a[aqqqqqqqqa]a]a]bb]	chr22:39916696-39916954(+)$1	258	100	127	15.3847
$$$bb!!cccqqqqqqqqccc]bb666	chr6:26285592-26285855(-)$1	263	128	155	13.8406
dd"""bb[bbqqqqqqqqbb]bb4444	chr7:50860172-50860453(-)$1	281	226	253	14.8613
##dddd[cccqqqqqqqqccc]ddddh	chr9:94711058-94711378(-)$1	320	275	302	15.3435
ddddddd[bbqqqqqqqqbbdddd22d	chr19:40785066-40785369(-)$1	303	39	66	14.1184
gggg[eeeeeqqqqqqqqeeeee]ggg	chr17:26941724-26942069(-)$1	345	139	166	16.8291
=======cccqqqqqqqqccc]=====	chr19:41882620-41882947(+)$1	327	214	241	17.5665
eeeee[a[bbqqqqqqqqbba]eeeee	chr1:228270954-228271281(+)$1	327	150	177	14.6177
Fggggggg[aqqqqqqqqa]ggggggg	chr19:10221604-10221954(+)$1	350	208	235	16.1042
d!!gggggggqqqqqqqqggggggg22	chr2:97525513-97525824(-)$1	311	94	121	16.2750
Jiiiiiiiiiqqqqqqqqiiiiiiiii	chr19:49964767-49965078(+)$1	311	159	186	15.6263
$$$$$eeeeeqqqqqqqqeeeee22cc	chr17:40265248-40265572(-)$1	324	262	289	15.5117
a[hhhhhhhhqqqqqqqqhhhhhhhh]	chr6:31639666-31639996(+)$1	330	56	83	14.0975
ccc[eeeeeaqqqqqqqqa]eeeeecc	chr17:80400513-80400862(-)$1	349	3	30	15.9197
b!!a[eeeeeqqqqqqqqeeeee]a]b	chr1:1208066-1208338(-)$1	272	165	192	16.4061
:::gggggggqqqqqqqqgggggggee	chr7:155570978-155571262(+)$1	284	142	169	13.2670
ddd"""ddddqqqqqqqqddddddddf	chr21:45374395-45374734(+)$1	339	169	196	15.3037
ggggggg!!aqqqqqqqqa22gggggg	chr3:197024714-197025086(-)$1	372	218	245	16.1670
[ccc[eeeeeqqqqqqqqeeeee]ccc	chr22:19431683-19432009(-)$1	326	86	113	16.7177
ggggg[ddddqqqqqqqqdddd]gggg	chr16:89353618-89353938(-)$1	320	191	218	16.3365
ccc[bb[cccqqqqqqqqccc]bb]cc	chr14:104163940-104164216(+)$1	276	159	186	15.5020
[iiiiiiiiiqqqqqqqqiiiiiiiii	chr16:89663178-89663450(+)$1	272	142	169	17.1058
==========ssssssssss=======	chr11:47493147-47493421(-)$1	274	226	253	10.6942
ii"""cccbbqqqqqqqqbb]ccc333	chr7:140396875-140397168(+)$1	293	251	278	16.1003
hhhhheeeeeqqqqqqqqeeeee8888	chr3:195635566-195635869(-)$1	303	35	62	13.8209
%%%gggggggqqqqqqqqgggggggee	chr19:41770802-41771100(+)$1	298	207	234	14.4162
[dddd[ddddqqqqqqqqdddd4444d	chr19:54970706-54970942(+)$1	236	55	82	15.8561
gggggggcccqqqqqqqqccc333ggg	chr22:20109977-20110226(+)$1	249	86	113	17.0761
dddd[eeeeeqqqqqqqqeeeee]ddd	chr3:128209200-128209443(+)$1	243	198	225	15.8723
g"""ffffffqqqqqqqqffffff]gg	chr6:31730659-31730979(+)$1	320	278	305	14.9232
[ccc"""cccqqqqqqqqccc22ccc]	chr3:49050189-49050477(+)$1	288	65	92	16.4563
:bb"""ddddqqqqqqqqdddd4444b	chr16:89762167-89762446(+)$1	279	210	237	14.9093
=======[bbqqqqqqqqbb=======	chr8:101963104-101963400(-)$1	296	98	125	16.8199
iiiiiiiiirrrrrrrrriiiiiiiii	chr8:144674992-144675264(-)$1	272	235	262	10.7016
c[ccc[ddddqqqqqqqqdddd]ccc3	chr16:1413478-1413809(-)$1	331	128	155	16.1311
gggg"""cccqqqqqqqqccc333ggg	chr12:30907138-30907450(-)$1	312	159	186	17.2522
dddgggggggqqqqqqqqggggggg]d	chr5:138630257-138630515(+)$1	258	158	185	16.0250
eeeee!!cccqqqqqqqqccc333eee	chr17:79877699-79877932(-)$1	233	53	80	16.0419
[dddd[ddddqqqqqqqqdddd]dddd	chr19:1395163-1395471(+)$1	308	251	278	15.1756
ddccceeeeeqqqqqqqqeeeee]ccc	chr2:61763735-61763989(-)$1	254	123	150	16.1540

#otherMatches

#Seq PSSM
GGCCCGAGAGGAAAGCGACUCGUUGGC	chr12:31478523-31478836(-)$1	313	260	287	16.2135
CGUCGCGGCUAAAACACGGGUCGGGGA	chr17:7476378-7476677(+)$1	299	269	296	15.5655
CGAGGGGAUGGGGACUGACAGGCCCCG	chr19:1881759-1882085(-)$1	326	151	178	14.4594
GCCACUUGGGGUCUGUGGUGCCCGAGU	chr3:23851852-23852198(+)$1	346	247	274	10.6942
CUCAAGGUGGCACAGUCCCCAUUGGGA	chr19:1416408-1416692(+)$1	284	193	220	15.8362
AGGUAGAGGCUUACACGUGAAUCGAUU	chr19:50168401-50168663(-)$1	262	181	208	15.0920
CAGCGAGAGUGAAAUUAAACUUGAAAC	chr18:3451490-3451757(+)$1	267	231	258	15.9599
CCGUCUCCUCUCAGGAGUGGGGUGGCG	chr1:2326208-2326543(+)$1	335	171	198	14.7747
UUGGGUCUGCUCUCCAAUGCAGAAUAC	chr11:64073967-64074286(+)$1	319	242	269	15.9886
AGUCCUGCCCGCAGUGUAGAGGCGAGG	chr8:101962484-101962780(-)$1	296	170	197	16.1408
CGGCGCGGGUUUUGGAUUGGUGGGGUG	chr22:39916696-39916954(+)$1	258	100	127	15.3847
AUGUCUGGCCGUGGUAAAGGUGGAAAA	chr6:26285592-26285855(-)$1	263	128	155	13.8406
UUUCUGAUGCAACUCUUCGCCUUUGCU	chr7:50860172-50860453(-)$1	281	226	253	14.8613
AGGAGCGCCAGAGACCUAUGGGGUUCG	chr9:94711058-94711378(-)$1	320	275	302	15.3435
GGUUCCAUGGCAGGCUCUUCUGGACAG	chr19:40785066-40785369(-)$1	303	39	66	14.1184
GGGCAUGGUGGACAGUAAUGCUGAGUU	chr17:26941724-26942069(-)$1	345	139	166	16.8291
CUUUGGCGAGGAAAUCGGCUCAGUCAA	chr19:41882620-41882947(+)$1	327	214	241	17.5665
GGGCAGGUGGACAGGAACCCCGUGCCC	chr1:228270954-228271281(+)$1	327	150	177	14.6177
GGGGCCGCCCAGGGAAGAGAGUGGCCU	chr19:10221604-10221954(+)$1	350	208	235	16.1042
GAAGGGUGGGUGGGGCCUCCCACUUGG	chr2:97525513-97525824(-)$1	311	94	121	16.2750
UGGCCCAGCUGGCGGGGGAGCUGGGCC	chr19:49964767-49965078(+)$1	311	159	186	15.6263
GAACUGCUCAUUUUAGCUUGAGUGAUG	chr17:40265248-40265572(-)$1	324	262	289	15.5117
AGAGUACUGGUAUCAGGCCCAGUGCUG	chr6:31639666-31639996(+)$1	330	56	83	14.0975
CAGACUUCUCCCCACCCCGUAGGAGCU	chr17:80400513-80400862(-)$1	349	3	30	15.9197
GAACUUGCAGUCCGUCAUCUGCACGGC	chr1:1208066-1208338(-)$1	272	165	192	16.4061
AGACCCAGGUGAGGAGAGGCCUGGGGA	chr7:155570978-155571262(+)$1	284	142	169	13.2670
GGACUUGCUCCUAGAAUUGGGCUCCAG	chr21:45374395-45374734(+)$1	339	169	196	15.3037
CGCGGCCGAGAAGGAGGACGAGGCCGC	chr3:197024714-197025086(-)$1	372	218	245	16.1670
AUUUGCACAGCAAUCCCUCUGUGAGAG	chr22:19431683-19432009(-)$1	326	86	113	16.7177
guccuaggucaucuugcaggcccaggg	chr16:89353618-89353938(-)$1	320	191	218	16.3365
UGGGUGGAUAUUUCAGCCUGUGCAGCC	chr14:104163940-104164216(+)$1	276	159	186	15.5020
ACCCUGCCCCGAUGAGAAGGGGCAGGG	chr16:89663178-89663450(+)$1	272	142	169	17.1058
UGGGAAAUAGUUUUUGACACCUAUUUU	chr11:47493147-47493421(-)$1	274	226	253	10.6942
UUAAUGCUGAAAAAUCACUCUGGCUGC	chr7:140396875-140397168(+)$1	293	251	278	16.1003
UCGGGCGGGAGGCGGUGGUCCUGGGAG	chr3:195635566-195635869(-)$1	303	35	62	13.8209
AGUCGGAAGAACAAGAGGUUUUCCGUU	chr19:41770802-41771100(+)$1	298	207	234	14.4162
CUCCACGUGAGGUCAUGGUCACAGCAU	chr19:54970706-54970942(+)$1	236	55	82	15.8561
UGUGUUUGUUGAAUUUAAAACCAGAAA	chr22:20109977-20110226(+)$1	249	86	113	17.0761
UCUCUGGCGGAAACGAACCCGCCUGGG	chr3:128209200-128209443(+)$1	243	198	225	15.8723
UCCUUUGGGUGAGUAUCAGCCCAACAA	chr6:31730659-31730979(+)$1	320	278	305	14.9232
GACCAGACCCUGUUUCCUGGGAAGGUG	chr3:49050189-49050477(+)$1	288	65	92	16.4563
CGCUAUGUUGGAAAUGUGCAACCACUG	chr16:89762167-89762446(+)$1	279	210	237	14.9093
UUUUUGCUCCUUGUGAACGGGCGGGGG	chr8:101963104-101963400(-)$1	296	98	125	16.8199
GCUGCCACCUGGGAUUGUGGUGGCGGC	chr8:144674992-144675264(-)$1	272	235	262	10.7016
UAGGUGGCUGAGGCACAGCAGUGGCUG	chr16:1413478-1413809(-)$1	331	128	155	16.1311
CUUGGAGGUCGAGAGACGGAUACGUAA	chr12:30907138-30907450(-)$1	312	159	186	17.2522
GGUUUCCAGACAAAGGGUUUUGGAGUA	chr5:138630257-138630515(+)$1	258	158	185	16.0250
CUGCAGACCUGGAGGCGAAGGGAGUGU	chr17:79877699-79877932(-)$1	233	53	80	16.0419
GCUCUACGGCAUCCUGCAGCUGCAGAG	chr19:1395163-1395471(+)$1	308	251	278	15.1756
GCCUCCUCCGAGUAAGGGCGGGGUGAG	chr2:61763735-61763989(-)$1	254	123	150	16.1540

#DB
((((.(.(((........))).).)))	chr12:31478523-31478836(-)$1	1	260	287	16.2135
(.((.(((((........))))).)).	chr17:7476378-7476677(+)$1	1	269	296	15.5655
(..((((.((........))..)))).	chr19:1881759-1882085(-)$1	1	151	178	14.4594
((((((((((..........)))))))	chr3:23851852-23852198(+)$1	1	247	274	10.6942
(((..(((((........)))))..))	chr19:1416408-1416692(+)$1	1	193	220	15.8362
(....((..(........)..))..))	chr19:50168401-50168663(-)$1	1	181	208	15.0920
.((...((((........))))....)	chr18:3451490-3451757(+)$1	1	231	258	15.9599
(((((.((((........)))).))))	chr1:2326208-2326543(+)$1	1	171	198	14.7747
((((((((((........)))))...)	chr11:64073967-64074286(+)$1	1	242	269	15.9886
((.(((((((........).))).)))	chr8:101962484-101962780(-)$1	1	170	197	16.1408
((((.(.(.(........).).).)).	chr22:39916696-39916954(+)$1	1	100	127	15.3847
...((..(((........))).))...	chr6:26285592-26285855(-)$1	1	128	155	13.8406
((...((.((........)).))....	chr7:50860172-50860453(-)$1	1	226	253	14.8613
..((((.(((........))).)))))	chr9:94711058-94711378(-)$1	1	275	302	15.3435
(((((((.((........))))))..)	chr19:40785066-40785369(-)$1	1	39	66	14.1184
((((.(((((........))))).)))	chr17:26941724-26942069(-)$1	1	139	166	16.8291
((((((((((........))).)))))	chr19:41882620-41882947(+)$1	1	214	241	17.5665
(((((.(.((........))).)))))	chr1:228270954-228271281(+)$1	1	150	177	14.6177
((((((((.(........).)))))))	chr19:10221604-10221954(+)$1	1	208	235	16.1042
(..(((((((........)))))))..	chr2:97525513-97525824(-)$1	1	94	121	16.2750
)(((((((((........)))))))))	chr19:49964767-49965078(+)$1	1	159	186	15.6263
.....(((((........)))))..))	chr17:40265248-40265572(-)$1	1	262	289	15.5117
(.((((((((........)))))))).	chr6:31639666-31639996(+)$1	1	56	83	14.0975
(((.((((((........).)))))))	chr17:80400513-80400862(-)$1	1	3	30	15.9197
(..(.(((((........))))).).)	chr1:1208066-1208338(-)$1	1	165	192	16.4061
...(((((((........)))))))((	chr7:155570978-155571262(+)$1	1	142	169	13.2670
(((...((((........))))))))(	chr21:45374395-45374734(+)$1	1	169	196	15.3037
(((((((..(........)..))))))	chr3:197024714-197025086(-)$1	1	218	245	16.1670
.(((.(((((........))))).)))	chr22:19431683-19432009(-)$1	1	86	113	16.7177
(((((.((((........)))).))))	chr16:89353618-89353938(-)$1	1	191	218	16.3365
(((.((.(((........))).)).))	chr14:104163940-104164216(+)$1	1	159	186	15.5020
.(((((((((........)))))))))	chr16:89663178-89663450(+)$1	1	142	169	17.1058
((((((((((..........)))))))	chr11:47493147-47493421(-)$1	1	226	253	10.6942
((...(((((........)).)))...	chr7:140396875-140397168(+)$1	1	251	278	16.1003
((((((((((........)))))....	chr3:195635566-195635869(-)$1	1	35	62	13.8209
...(((((((........)))))))))	chr19:41770802-41771100(+)$1	1	207	234	14.4162
.((((.((((........))))....)	chr19:54970706-54970942(+)$1	1	55	82	15.8561
((((((((((........)))...)))	chr22:20109977-20110226(+)$1	1	86	113	17.0761
((((.(((((........))))).)))	chr3:128209200-128209443(+)$1	1	198	225	15.8723
(...((((((........)))))).))	chr6:31730659-31730979(+)$1	1	278	305	14.9232
.(((...(((........)))..))).	chr3:49050189-49050477(+)$1	1	65	92	16.4563
.((...((((........))))....)	chr16:89762167-89762446(+)$1	1	210	237	14.9093
(((((((.((........)))))))))	chr8:101963104-101963400(-)$1	1	98	125	16.8199
(((((((((.........)))))))))	chr8:144674992-144675264(-)$1	1	235	262	10.7016
(.(((.((((........)))).))).	chr16:1413478-1413809(-)$1	1	128	155	16.1311
((((...(((........)))...)))	chr12:30907138-30907450(-)$1	1	159	186	17.2522
((((((((((........))))))).)	chr5:138630257-138630515(+)$1	1	158	185	16.0250
(((((..(((........)))...)))	chr17:79877699-79877932(-)$1	1	53	80	16.0419
.((((.((((........)))).))))	chr19:1395163-1395471(+)$1	1	251	278	15.1756
((((((((((........))))).)))	chr2:61763735-61763989(-)$1	1	123	150	16.1540

#PSSM
d : 0.18	[ : 0.12	g : 0.12	e : 0.08	= : 0.08	h : 0.06	i : 0.06	c : 0.06	b : 0.04	$ : 0.04	: : 0.04	f : 0.02	# : 0.02	F : 0.02	J : 0.02	a : 0.02	% : 0.02	
d : 0.19	g : 0.12	= : 0.08	i : 0.08	c : 0.08	[ : 0.06	! : 0.06	h : 0.06	e : 0.06	# : 0.04	b : 0.04	$ : 0.04	f : 0.02	: : 0.02	% : 0.02	" : 0.02	
d : 0.16	g : 0.12	c : 0.12	b : 0.08	= : 0.08	h : 0.08	! : 0.06	e : 0.06	" : 0.06	i : 0.06	$ : 0.04	# : 0.02	[ : 0.02	: : 0.02	% : 0.02	
g : 0.19	d : 0.14	" : 0.12	c : 0.10	= : 0.08	b : 0.06	h : 0.06	e : 0.06	i : 0.06	[ : 0.04	! : 0.02	# : 0.02	$ : 0.02	a : 0.02	
g : 0.16	[ : 0.14	" : 0.14	d : 0.10	= : 0.08	e : 0.08	h : 0.06	c : 0.06	i : 0.06	b : 0.04	! : 0.02	# : 0.02	$ : 0.02	f : 0.02	
e : 0.21	g : 0.14	[ : 0.12	" : 0.10	= : 0.08	d : 0.06	b : 0.06	i : 0.06	a : 0.04	c : 0.04	! : 0.04	h : 0.02	f : 0.02	
e : 0.21	d : 0.19	g : 0.14	[ : 0.08	= : 0.08	i : 0.06	b : 0.04	c : 0.04	! : 0.04	" : 0.04	a : 0.02	h : 0.02	f : 0.02	
c : 0.21	e : 0.21	d : 0.16	[ : 0.10	g : 0.10	i : 0.06	= : 0.04	! : 0.04	a : 0.02	h : 0.02	f : 0.02	
e : 0.21	c : 0.19	d : 0.16	b : 0.12	g : 0.08	i : 0.06	= : 0.04	! : 0.04	[ : 0.04	h : 0.02	f : 0.02	
e : 0.19	c : 0.18	d : 0.16	b : 0.12	a : 0.12	g : 0.08	= : 0.04	i : 0.04	h : 0.02	f : 0.02	r : 0.02	
q : 0.94	s : 0.04	r : 0.02	
q : 0.94	s : 0.04	r : 0.02	
q : 0.94	s : 0.04	r : 0.02	
q : 0.94	s : 0.04	r : 0.02	
q : 0.94	s : 0.04	r : 0.02	
q : 0.94	s : 0.04	r : 0.02	
q : 0.94	s : 0.04	r : 0.02	
q : 0.94	s : 0.04	r : 0.02	
e : 0.19	c : 0.18	d : 0.16	b : 0.12	a : 0.12	g : 0.08	i : 0.06	s : 0.04	h : 0.02	f : 0.02	
e : 0.19	c : 0.18	d : 0.16	b : 0.12	] : 0.08	g : 0.08	i : 0.06	s : 0.04	2 : 0.04	h : 0.02	f : 0.02	
e : 0.21	c : 0.19	d : 0.18	g : 0.10	2 : 0.06	= : 0.06	i : 0.06	a : 0.04	] : 0.04	h : 0.02	f : 0.02	
e : 0.21	d : 0.18	] : 0.14	g : 0.12	= : 0.06	i : 0.06	3 : 0.06	2 : 0.04	b : 0.04	c : 0.04	h : 0.02	f : 0.02	
e : 0.23	g : 0.12	d : 0.08	= : 0.08	b : 0.08	] : 0.08	4 : 0.06	i : 0.06	3 : 0.06	a : 0.04	c : 0.04	h : 0.02	f : 0.02	2 : 0.02	
] : 0.18	g : 0.14	d : 0.10	= : 0.08	4 : 0.08	3 : 0.08	2 : 0.06	i : 0.06	c : 0.06	h : 0.04	b : 0.04	e : 0.04	8 : 0.02	f : 0.02	
g : 0.19	d : 0.12	c : 0.10	= : 0.08	2 : 0.08	4 : 0.08	e : 0.06	i : 0.06	b : 0.04	h : 0.04	3 : 0.04	] : 0.04	6 : 0.02	a : 0.02	8 : 0.02	
c : 0.16	g : 0.14	d : 0.12	= : 0.08	i : 0.08	4 : 0.08	e : 0.08	h : 0.06	b : 0.04	3 : 0.04	2 : 0.04	] : 0.04	6 : 0.02	8 : 0.02	
g : 0.14	d : 0.12	c : 0.12	] : 0.10	e : 0.10	= : 0.08	i : 0.08	h : 0.06	b : 0.06	3 : 0.04	6 : 0.02	4 : 0.02	2 : 0.02	f : 0.02	8 : 0.02	

#score	768.0552537357223
#seq	50
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_UTR_m3_run1.txt

#BEAR
""cccqqqqqqqqccc22	chr3:49050104-49050360(+)$1	256	155	173	15.3350
eeeeeqqqqqqqqeeeee	chr3:49049622-49049845(+)$1	223	23	41	13.8725
=====qqqqqqqq=====	chr5:137088650-137088933(-)$1	283	226	244	14.6375
"""bbqqqqqqqqbb333	chr17:42397178-42397393(-)$1	215	76	94	13.8888
eeeeeqqqqqqqqeeeee	chr16:67197230-67197530(+)$1	300	78	96	13.8725
eeeeeqqqqqqqqeeeee	chr16:30544136-30544411(-)$1	275	42	60	13.8725
eeeeeqqqqqqqqeeeee	chr10:25010782-25011059(-)$1	277	94	112	13.8725
ddd[aqqqqqqqqa]ddd	chr16:24551579-24551832(+)$1	253	211	229	13.4896
''cccqqqqqqqqccc88	chr12:125396119-125396387(-)$1	268	209	227	13.2129
gggggqqqqqqqqggggg	chr2:20647991-20648212(+)$1	221	186	204	14.3517
gggggqqqqqqqqggggg	chr3:49051051-49051277(+)$1	226	160	178	14.3517
eeeeeqqqqqqqqeeeee	chr19:10802605-10802892(+)$1	287	18	36	13.8725
##cccqqqqqqqqccc55	chr10:125768915-125769157(-)$1	242	189	207	14.0581
[ddddqqqqqqqqdddd]	chr2:20647705-20647940(+)$1	235	26	44	14.2614
[ddddqqqqqqqqdddde	chr2:130909582-130909831(-)$1	249	76	94	14.0942
gggggqqqqqqqqggggg	chr7:94292545-94292756(+)$1	211	145	163	14.3517
=====qqqqqqqq=====	chr5:137088534-137088778(-)$1	244	71	89	14.6375
gggggqqqqqqqqggggg	chr17:63554378-63554643(-)$1	265	99	117	14.3517
!ddddqqqqqqqqdddd3	chr6:30711380-30711603(-)$1	223	179	197	14.4443
e[cccqqqqqqqqccc]e	chr3:196675185-196675459(-)$1	274	98	116	15.1031
$$cccqqqqqqqqccc66	chr6:37141884-37142136(+)$1	252	204	222	14.1836
a[cccqqqqqqqqccca]	chr20:43059145-43059408(+)$1	263	209	227	15.1337
""cccqqqqqqqqccc44	chr16:87364072-87364361(-)$1	289	222	240	15.5671
b[cccqqqqqqqqccc33	chr11:208210-208489(+)$1	279	194	212	15.2339
ddcccqqqqqqqqccc]d	chr6:114178776-114179090(+)$1	314	222	240	14.5124
"ddddqqqqqqqqdddd8	chr4:83350898-83351140(-)$1	242	115	133	13.8985
gggggqqqqqqqqggggg	chr14:21737441-21737654(-)$1	213	192	210	14.3517
iiiiiqqqqqqqqiiiii	chr17:74372660-74372899(+)$1	239	138	156	14.3455
b[cccqqqqqqqqcccbb	chr3:49049922-49050152(+)$1	230	91	109	13.9951
ffcccqqqqqqqqccc]f	chr2:28635618-28635856(+)$1	238	33	51	14.4706
eeeeeqqqqqqqqeeeee	chr14:37641726-37642008(+)$1	282	2	20	13.8725
[ddddqqqqqqqqdddd]	chr6:30711745-30712009(-)$1	264	111	129	14.2614
[ddddqqqqqqqqdddd]	chr14:55034483-55034732(+)$1	249	188	206	14.2614
!!cccqqqqqqqqccc]b	chr17:74307481-74307738(-)$1	257	209	227	15.0972
gggggqqqqqqqqggggg	chr14:21737417-21737620(-)$1	203	158	176	14.3517
!!cccqqqqqqqqccc55	chr14:24105527-24105793(+)$1	266	146	164	14.1846
##cccqqqqqqqqccc22	chr19:50028013-50028268(+)$1	255	47	65	15.2602
eeeeeqqqqqqqqeeeee	chr16:8942234-8942498(+)$1	264	223	241	13.8725
""cccqqqqqqqqccc22	chr3:49050210-49050523(+)$1	313	49	67	15.3350
gggggqqqqqqqqggggg	chr1:153963140-153963378(+)$1	238	218	236	14.3517
gggggqqqqqqqqggggg	chr2:20648055-20648314(+)$1	259	122	140	14.3517
gggggqqqqqqqqggggg	chr16:9185417-9185657(+)$1	240	5	23	14.3517
!!cccqqqqqqqqccc22	chr19:18977954-18978247(+)$1	293	192	210	15.3867
##cccqqqqqqqqccc55	chr2:71351372-71351616(-)$1	244	61	79	14.0581
a[a[aqqqqqqqqa]a]a	chr22:39916705-39916957(+)$1	252	96	114	14.1793
[ddddqqqqqqqqdddd]	chr19:10224621-10224869(+)$1	248	93	111	14.2614
eeeeeqqqqqqqqeeeee	chr6:30558409-30558669(+)$1	260	191	209	13.8725
e[cccqqqqqqqqccc]e	chr8:11695928-11696193(+)$1	265	225	243	15.1031
b[cccqqqqqqqqccc]b	chr19:47290458-47290698(-)$1	240	8	26	14.5333
eeebbqqqqqqqqbb]ee	chrX:23803868-23804091(+)$1	223	118	136	12.9245
"ddddqqqqqqqqdddd2	chr18:672764-673012(-)$1	248	106	124	14.2335
ccc[aqqqqqqqqa]ccc	chr11:85779687-85779974(-)$1	287	261	279	13.8412
=====qqqqqqqq=====	chr8:128753097-128753347(+)$1	250	211	229	14.6375
gggggqqqqqqqqggggg	chr16:30543682-30543937(-)$1	255	2	20	14.3517
bddddqqqqqqqqdddd]	chr6:11185564-11185872(-)$1	308	52	70	13.7850
eeeeeqqqqqqqqeeeee	chr13:113536775-113537110(+)$1	335	65	83	13.8725
eeeeeqqqqqqqqeeeee	chr22:38061593-38061873(+)$1	280	154	172	13.8725
d[cccqqqqqqqqccc22	chr12:12870382-12870648(+)$1	266	105	123	14.9119
!!cccqqqqqqqqccc33	chr20:44518910-44519134(-)$1	224	111	129	15.7978
ddd[aqqqqqqqqadddd	chr17:39977850-39978081(+)$1	231	173	191	13.5705
"ddddqqqqqqqqdddd3	chr6:36567654-36567934(+)$1	280	109	127	14.4460
""cccqqqqqqqqcccee	chr6:1312720-1312949(+)$1	229	118	136	15.2512
gggggqqqqqqqqggggg	chr12:110765452-110765803(+)$1	351	251	269	14.3517
eeeeeqqqqqqqqeeeee	chr10:103901140-103901387(+)$1	247	12	30	13.8725
""cccqqqqqqqqcccee	chr17:37618215-37618459(+)$1	244	116	134	15.2512
###bbqqqqqqqqbb333	chr2:100055540-100055818(-)$1	278	94	112	13.7746

#otherMatches

#Seq PSSM
GACCCUGUUUCCUGGGAA	chr3:49050104-49050360(+)$1	256	155	173	15.3350
GCUUCAGAAGACCGAAGC	chr3:49049622-49049845(+)$1	223	23	41	13.8725
UAAGGCUGCUUACCCUUG	chr5:137088650-137088933(-)$1	283	226	244	14.6375
GGAGGAGACCCAGCCAAG	chr17:42397178-42397393(-)$1	215	76	94	13.8888
GCCCAACGAAGCCUGGGU	chr16:67197230-67197530(+)$1	300	78	96	13.8725
AGCCCCCUUUGCCGGGUU	chr16:30544136-30544411(-)$1	275	42	60	13.8725
GUUGUCUGUUUCAACAGC	chr10:25010782-25011059(-)$1	277	94	112	13.8725
CCUGCUUGUGGUUGGGGG	chr16:24551579-24551832(+)$1	253	211	229	13.4896
uuuuuuuuuuuuuAAGUU	chr12:125396119-125396387(-)$1	268	209	227	13.2129
CGCGGGAGUGUGGCCGCG	chr2:20647991-20648212(+)$1	221	186	204	14.3517
GACACUACUGUCUGUGUC	chr3:49051051-49051277(+)$1	226	160	178	14.3517
UUCAUGAACUAGGAUGAA	chr19:10802605-10802892(+)$1	287	18	36	13.8725
UUUGGCAGCACCUUCAUC	chr10:125768915-125769157(-)$1	242	189	207	14.0581
AGGUCUUCGAGACGGCCA	chr2:20647705-20647940(+)$1	235	26	44	14.2614
UGGCCUCCCCACUGGCUG	chr2:130909582-130909831(-)$1	249	76	94	14.0942
GGGCCAGGAUCCAGGCCU	chr7:94292545-94292756(+)$1	211	145	163	14.3517
UAAGGCUGCUUACCCUUG	chr5:137088534-137088778(-)$1	244	71	89	14.6375
GGAGGGGCGGGCAUCUCC	chr17:63554378-63554643(-)$1	265	99	117	14.3517
CCUCCUAGGUGAUGGAGA	chr6:30711380-30711603(-)$1	223	179	197	14.4443
UUUCCUUUGCUCUGGACG	chr3:196675185-196675459(-)$1	274	98	116	15.1031
AUAGAUACUCUCUUCUUC	chr6:37141884-37142136(+)$1	252	204	222	14.1836
GCUUCCAGAAAAUGAACA	chr20:43059145-43059408(+)$1	263	209	227	15.1337
UCCAGCCACUUGACUGUC	chr16:87364072-87364361(-)$1	289	222	240	15.5671
ccugcauuccccagcAAA	chr11:208210-208489(+)$1	279	194	212	15.2339
GUCGCCUUCCAAAGCGAA	chr6:114178776-114179090(+)$1	314	222	240	14.5124
GCUGGACCGGACGCCAGA	chr4:83350898-83351140(-)$1	242	115	133	13.8985
UUCUUGGUAAGUGGAGAG	chr14:21737441-21737654(-)$1	213	192	210	14.3517
CCCAGCUUUCCUUUUGGG	chr17:74372660-74372899(+)$1	239	138	156	14.3455
UACACUCAAGGCUGUGAC	chr3:49049922-49050152(+)$1	230	91	109	13.9951
AUACUGUCUCUGGAGUGA	chr2:28635618-28635856(+)$1	238	33	51	14.4706
CGCGCGAUCUCCGGCGCG	chr14:37641726-37642008(+)$1	282	2	20	13.8725
UGCCAGAUCCUGAUGGCU	chr6:30711745-30712009(-)$1	264	111	129	14.2614
GGUUUAAGGGCUGGAACG	chr14:55034483-55034732(+)$1	249	188	206	14.2614
GAAACAGCCUGGAGUUAG	chr17:74307481-74307738(-)$1	257	209	227	15.0972
UUCUUGGUAAGUGGAGAG	chr14:21737417-21737620(-)$1	203	158	176	14.3517
aagagcuguaacacucac	chr14:24105527-24105793(+)$1	266	146	164	14.1846
CUGGUUUCCCGUUGCCUU	chr19:50028013-50028268(+)$1	255	47	65	15.2602
GGCAAAACAGUCCUUGCC	chr16:8942234-8942498(+)$1	264	223	241	13.8725
GACCCUGUUUCCUGGGAA	chr3:49050210-49050523(+)$1	313	49	67	15.3350
AGGGUCCUCAUUUACCCU	chr1:153963140-153963378(+)$1	238	218	236	14.3517
CGCGGGAGUGUGGCCGCG	chr2:20648055-20648314(+)$1	259	122	140	14.3517
CUGUCAGCAUGUGGGCGG	chr16:9185417-9185657(+)$1	240	5	23	14.3517
CUCAGAAGCCAAGCUGCU	chr19:18977954-18978247(+)$1	293	192	210	15.3867
AGCAGUGCCAGAUUUGGA	chr2:71351372-71351616(-)$1	244	61	79	14.0581
CGGGUUUUGGAUUGGUGG	chr22:39916705-39916957(+)$1	252	96	114	14.1793
ACCCAAGCACGCCUGGGC	chr19:10224621-10224869(+)$1	248	93	111	14.2614
AAGGUGGAGUGUGACCUU	chr6:30558409-30558669(+)$1	260	191	209	13.8725
GUGGAUUUACUUUUUUUC	chr8:11695928-11696193(+)$1	265	225	243	15.1031
AGGAGGUGCUCGAUUCGU	chr19:47290458-47290698(-)$1	240	8	26	14.5333
AGAUGACAACCUCCAUUC	chrX:23803868-23804091(+)$1	223	118	136	12.9245
UUUCGAAGAAUCCUGAGC	chr18:672764-673012(-)$1	248	106	124	14.2335
CCAAGAAAAAGCACCUGG	chr11:85779687-85779974(-)$1	287	261	279	13.8412
GUCUUGAGACUGAAAGAU	chr8:128753097-128753347(+)$1	250	211	229	14.6375
GGCGUAGGGGCCGGCGCC	chr16:30543682-30543937(-)$1	255	2	20	14.3517
CCCACCACAAACAGUGGC	chr6:11185564-11185872(-)$1	308	52	70	13.7850
UGCGGAUGCACCGCCGUA	chr13:113536775-113537110(+)$1	335	65	83	13.8725
CUGUGCUCACGCUCACAG	chr22:38061593-38061873(+)$1	280	154	172	13.8725
ACGGGCUUUGCCACCCUC	chr12:12870382-12870648(+)$1	266	105	123	14.9119
ACAUGCACAUCAUCAUCA	chr20:44518910-44519134(-)$1	224	111	129	15.7978
UGAAGACAUGGACCUCAA	chr17:39977850-39978081(+)$1	231	173	191	13.5705
UGCUGUUUUCUCUCAGCC	chr6:36567654-36567934(+)$1	280	109	127	14.4460
GAUCCCCGGCCCCGGAUC	chr6:1312720-1312949(+)$1	229	118	136	15.2512
UGGCAAAGAAAAAUGCCA	chr12:110765452-110765803(+)$1	351	251	269	14.3517
GGGCACCCCCUCCUGCCC	chr10:103901140-103901387(+)$1	247	12	30	13.8725
AUUCAGAGAGACAUGGGG	chr17:37618215-37618459(+)$1	244	116	134	15.2512
UGGCAUGAACAGUUGGAA	chr2:100055540-100055818(-)$1	278	94	112	13.7746

#DB
..(((........)))..	chr3:49050104-49050360(+)$1	1	155	173	15.3350
(((((........)))))	chr3:49049622-49049845(+)$1	1	23	41	13.8725
(((((........)))))	chr5:137088650-137088933(-)$1	1	226	244	14.6375
...((........))...	chr17:42397178-42397393(-)$1	1	76	94	13.8888
(((((........)))))	chr16:67197230-67197530(+)$1	1	78	96	13.8725
(((((........)))))	chr16:30544136-30544411(-)$1	1	42	60	13.8725
(((((........)))))	chr10:25010782-25011059(-)$1	1	94	112	13.8725
(((.(........).)))	chr16:24551579-24551832(+)$1	1	211	229	13.4896
..(((........)))..	chr12:125396119-125396387(-)$1	1	209	227	13.2129
(((((........)))))	chr2:20647991-20648212(+)$1	1	186	204	14.3517
(((((........)))))	chr3:49051051-49051277(+)$1	1	160	178	14.3517
(((((........)))))	chr19:10802605-10802892(+)$1	1	18	36	13.8725
..(((........)))..	chr10:125768915-125769157(-)$1	1	189	207	14.0581
.((((........)))).	chr2:20647705-20647940(+)$1	1	26	44	14.2614
.((((........)))))	chr2:130909582-130909831(-)$1	1	76	94	14.0942
(((((........)))))	chr7:94292545-94292756(+)$1	1	145	163	14.3517
(((((........)))))	chr5:137088534-137088778(-)$1	1	71	89	14.6375
(((((........)))))	chr17:63554378-63554643(-)$1	1	99	117	14.3517
.((((........)))).	chr6:30711380-30711603(-)$1	1	179	197	14.4443
(.(((........))).)	chr3:196675185-196675459(-)$1	1	98	116	15.1031
..(((........)))..	chr6:37141884-37142136(+)$1	1	204	222	14.1836
(.(((........)))).	chr20:43059145-43059408(+)$1	1	209	227	15.1337
..(((........)))..	chr16:87364072-87364361(-)$1	1	222	240	15.5671
(.(((........)))..	chr11:208210-208489(+)$1	1	194	212	15.2339
(((((........))).)	chr6:114178776-114179090(+)$1	1	222	240	14.5124
.((((........)))).	chr4:83350898-83351140(-)$1	1	115	133	13.8985
(((((........)))))	chr14:21737441-21737654(-)$1	1	192	210	14.3517
(((((........)))))	chr17:74372660-74372899(+)$1	1	138	156	14.3455
(.(((........)))))	chr3:49049922-49050152(+)$1	1	91	109	13.9951
(((((........))).)	chr2:28635618-28635856(+)$1	1	33	51	14.4706
(((((........)))))	chr14:37641726-37642008(+)$1	1	2	20	13.8725
.((((........)))).	chr6:30711745-30712009(-)$1	1	111	129	14.2614
.((((........)))).	chr14:55034483-55034732(+)$1	1	188	206	14.2614
..(((........))).)	chr17:74307481-74307738(-)$1	1	209	227	15.0972
(((((........)))))	chr14:21737417-21737620(-)$1	1	158	176	14.3517
..(((........)))..	chr14:24105527-24105793(+)$1	1	146	164	14.1846
..(((........)))..	chr19:50028013-50028268(+)$1	1	47	65	15.2602
(((((........)))))	chr16:8942234-8942498(+)$1	1	223	241	13.8725
..(((........)))..	chr3:49050210-49050523(+)$1	1	49	67	15.3350
(((((........)))))	chr1:153963140-153963378(+)$1	1	218	236	14.3517
(((((........)))))	chr2:20648055-20648314(+)$1	1	122	140	14.3517
(((((........)))))	chr16:9185417-9185657(+)$1	1	5	23	14.3517
..(((........)))..	chr19:18977954-18978247(+)$1	1	192	210	15.3867
..(((........)))..	chr2:71351372-71351616(-)$1	1	61	79	14.0581
(.(.(........).).)	chr22:39916705-39916957(+)$1	1	96	114	14.1793
.((((........)))).	chr19:10224621-10224869(+)$1	1	93	111	14.2614
(((((........)))))	chr6:30558409-30558669(+)$1	1	191	209	13.8725
(.(((........))).)	chr8:11695928-11696193(+)$1	1	225	243	15.1031
(.(((........))).)	chr19:47290458-47290698(-)$1	1	8	26	14.5333
(((((........)).))	chrX:23803868-23804091(+)$1	1	118	136	12.9245
.((((........)))).	chr18:672764-673012(-)$1	1	106	124	14.2335
(((.(........).)))	chr11:85779687-85779974(-)$1	1	261	279	13.8412
(((((........)))))	chr8:128753097-128753347(+)$1	1	211	229	14.6375
(((((........)))))	chr16:30543682-30543937(-)$1	1	2	20	14.3517
(((((........)))).	chr6:11185564-11185872(-)$1	1	52	70	13.7850
(((((........)))))	chr13:113536775-113537110(+)$1	1	65	83	13.8725
(((((........)))))	chr22:38061593-38061873(+)$1	1	154	172	13.8725
(.(((........)))..	chr12:12870382-12870648(+)$1	1	105	123	14.9119
..(((........)))..	chr20:44518910-44519134(-)$1	1	111	129	15.7978
(((.(........)))))	chr17:39977850-39978081(+)$1	1	173	191	13.5705
.((((........)))).	chr6:36567654-36567934(+)$1	1	109	127	14.4460
..(((........)))))	chr6:1312720-1312949(+)$1	1	118	136	15.2512
(((((........)))))	chr12:110765452-110765803(+)$1	1	251	269	14.3517
(((((........)))))	chr10:103901140-103901387(+)$1	1	12	30	13.8725
..(((........)))))	chr17:37618215-37618459(+)$1	1	116	134	15.2512
...((........))...	chr2:100055540-100055818(-)$1	1	94	112	13.7746

#PSSM
e : 0.21	g : 0.16	" : 0.13	[ : 0.07	! : 0.07	d : 0.06	# : 0.06	b : 0.06	= : 0.04	a : 0.03	' : 0.01	$ : 0.01	i : 0.01	f : 0.01	c : 0.01	
d : 0.19	e : 0.18	g : 0.16	[ : 0.12	" : 0.09	# : 0.06	! : 0.06	= : 0.04	' : 0.01	$ : 0.01	i : 0.01	f : 0.01	c : 0.01	
c : 0.36	e : 0.18	d : 0.18	g : 0.16	= : 0.04	" : 0.01	i : 0.01	a : 0.01	# : 0.01	
c : 0.34	e : 0.16	g : 0.16	d : 0.15	[ : 0.06	= : 0.04	b : 0.04	i : 0.01	
c : 0.34	e : 0.16	g : 0.16	d : 0.15	a : 0.06	= : 0.04	b : 0.04	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.34	e : 0.16	g : 0.16	d : 0.15	a : 0.06	= : 0.04	b : 0.04	i : 0.01	
c : 0.34	e : 0.16	g : 0.16	d : 0.16	= : 0.04	b : 0.04	] : 0.04	i : 0.01	
c : 0.36	d : 0.18	e : 0.16	g : 0.16	= : 0.04	3 : 0.03	i : 0.01	a : 0.01	] : 0.01	
e : 0.21	d : 0.18	g : 0.16	] : 0.10	2 : 0.07	3 : 0.06	= : 0.04	5 : 0.04	8 : 0.01	6 : 0.01	a : 0.01	4 : 0.01	i : 0.01	b : 0.01	c : 0.01	
e : 0.25	g : 0.16	2 : 0.09	3 : 0.09	] : 0.09	= : 0.04	d : 0.04	5 : 0.04	b : 0.04	8 : 0.03	6 : 0.01	4 : 0.01	i : 0.01	f : 0.01	a : 0.01	c : 0.01	

#score	947.3181879270028
#seq	66
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_transcript_m3_run2.txt

#BEAR
ee!!eeeeepppppppeeeee]eeee	chr17:18965298-18965547(+)$1	249	172	198	16.6967
[dddd[cccpppppppccc]dddd]b	chr1:245207208-245207422(+)$1	214	141	167	12.7163
ffffeeeeepppppppeeeee]ffff	chr2:234184368-234184594(+)$1	226	93	119	15.9221
b"""eeeeepppppppeeeeebb]bb	chr14:95999818-96000020(-)$1	202	73	99	18.1487
%%%ffffffpppppppffffff22ii	chr14:96850951-96851190(+)$1	239	72	98	13.2371
gggg[a[bbpppppppbbaggggggg	chr19:49606592-49606852(+)$1	260	13	39	12.9829
c"""eeeeeqqqqqqqqeeeee22cc	chr2:234197358-234197569(+)$1	211	133	159	10.8742
b"""eeeeepppppppeeeeebb]bb	chr14:95999787-95999998(-)$1	211	51	77	18.1487
d[ccc[cccpppppppccc]ccc]dd	chr17:79958114-79958352(+)$1	238	143	169	14.1886
ff"""ddddpppppppdddd333fff	chr2:234197387-234197597(+)$1	210	122	148	16.1305
ffffeeeeepppppppeeeee]ffff	chr2:234184430-234184638(+)$1	208	31	57	15.9221
c"""eeeeeqqqqqqqqeeeee22cc	chr2:234197339-234197548(+)$1	209	152	178	10.8742
b"""eeeeepppppppeeeeebb]bb	chr14:95999812-96000018(-)$1	206	71	97	18.1487
c[gggggggpppppppggggggg]cc	chr12:6619371-6619583(+)$1	212	170	196	15.2012
c"""eeeeeooooooeeeee333ccc	chr7:2674519-2674784(+)$1	265	106	132	10.0456
bb[ddddrrrrrrrrrdddd]bbeee	chr12:120730931-120731138(-)$1	207	38	64	10.5937
ee:ffffffpppppppffffffgggg	chr13:46948522-46948821(-)$1	299	139	165	12.7747
hh"""ddddpppppppdddd333hhh	chr2:234197397-234197604(+)$1	207	112	138	15.5819
h[ddddcccpppppppccc]ddddhh	chr20:62338329-62338606(-)$1	277	24	50	12.9974
ff"""ddddpppppppdddd333fff	chr2:234197411-234197624(+)$1	213	98	124	16.1305
:bb[eeeeepppppppeeeee]bb::	chr21:47559219-47559483(-)$1	264	189	215	13.3271
$$$$ddddrrrrrrrrrdddd4444d	chr18:9518118-9518329(-)$1	211	48	74	11.8661
b"""eeeeepppppppeeeeebb]bb	chr14:95999825-96000053(-)$1	228	106	132	18.1487
b"""eeeeepppppppeeeeebb]bb	chr14:95999772-95999985(-)$1	213	38	64	18.1487
hh!!eeeeepppppppeeeeehhhhh	chr1:205535769-205535991(+)$1	222	181	207	16.0003
c!!ccc[bbpppppppbbccc22ccc	chr1:6705940-6706240(-)$1	300	235	261	13.8194
c[gggggggpppppppggggggg]cc	chr12:6619387-6619596(+)$1	209	154	180	15.2012
eee[eeeeepppppppeeeee]eeee	chr17:79817168-79817407(-)$1	239	93	119	15.9102
###ffffffpppppppffffffffff	chr17:38183757-38183968(-)$1	211	29	55	14.6610
b"""eeeeepppppppeeeeebb]bb	chr14:95999820-96000023(-)$1	203	76	102	18.1487
ffffeeeeepppppppeeeee]ffff	chr2:234184394-234184601(+)$1	207	67	93	15.9221
ccgggggggpppppppggggggg22c	chr18:47340403-47340607(+)$1	204	3	29	14.1956
ee!!eeeeeqqqqqqqqeeeee22ee	chr3:160232594-160232824(-)$1	230	180	206	9.5779
"""ffffffpppppppffffffbbee	chr9:137029550-137029774(-)$1	224	175	201	14.3411
dddd[ddddpppppppdddd4444dd	chr14:81668994-81669204(-)$1	210	135	161	14.0747
dddd[ddddpppppppdddd4444dd	chr14:81668975-81669194(-)$1	219	125	151	14.0747
b"""eeeeepppppppeeeeebb]bb	chr14:95999798-96000012(-)$1	214	65	91	18.1487
ff"""ddddpppppppdddd333fff	chr2:234197424-234197658(+)$1	234	85	111	16.1305
b[ccc[cccpppppppccc]ccc]bb	chr14:23239503-23239769(+)$1	266	74	100	14.6378
###ffffffpppppppffffffffff	chr17:38183722-38183957(-)$1	235	18	44	14.6610
hh"""ddddpppppppdddd333hhh	chr2:234197404-234197611(+)$1	207	105	131	15.5819
c[gggggggpppppppggggggg]cc	chr12:6619383-6619587(+)$1	204	158	184	15.2012
$$$$eeeeeqqqqqqqqeeeeeccc]	chr19:37503099-37503310(+)$1	211	172	198	9.3472
bb!!eeeeeqqqqqqqqeeeee22bb	chr7:98479339-98479556(+)$1	217	67	93	9.8344

#otherMatches

#Seq PSSM
ACUAGCUCGUAAACUCCGGGCCGUUU	chr17:18965298-18965547(+)$1	249	172	198	16.6967
uuaaaugcaaaauaaaugcuuuuauu	chr1:245207208-245207422(+)$1	214	141	167	12.7163
CCGUCACAUUUAAGUCAUGUGUAUGG	chr2:234184368-234184594(+)$1	226	93	119	15.9221
GCACAGGGUUGGUGGUACCCUCGAGC	chr14:95999818-96000020(-)$1	202	73	99	18.1487
uuauguccucuaucuaaggacaauau	chr14:96850951-96851190(+)$1	239	72	98	13.2371
GAGAUGUGGUUCCUCUCCCUCUCCUG	chr19:49606592-49606852(+)$1	260	13	39	12.9829
CACUGGUUGGCAUCCAACAGCUUAGU	chr2:234197358-234197569(+)$1	211	133	159	10.8742
GCACAGGGUUGGUGGUACCCUCGAGC	chr14:95999787-95999998(-)$1	211	51	77	18.1487
UGAGGGCCUUUGAUCUGGGACUUGGG	chr17:79958114-79958352(+)$1	238	143	169	14.1886
AGCUUAGUCACAAAGGGAUUUGAUUG	chr2:234197387-234197597(+)$1	210	122	148	16.1305
CCGUCACAUUUAAGUCAUGUGUAUGG	chr2:234184430-234184638(+)$1	208	31	57	15.9221
CACUGGUUGGCAUCCAACAGCUUAGU	chr2:234197339-234197548(+)$1	209	152	178	10.8742
GCACAGGGUUGGUGGUACCCUCGAGC	chr14:95999812-96000018(-)$1	206	71	97	18.1487
GCUACCUCUUUUUAAUAGGGGUGAUU	chr12:6619371-6619583(+)$1	212	170	196	15.2012
CAGGGGGUGGAGGGGCAUCUGGGGUC	chr7:2674519-2674784(+)$1	265	106	132	10.0456
CACCUUUGCGAAAUAGGAAGCUGGUU	chr12:120730931-120731138(-)$1	207	38	64	10.5937
ucuuaucaguuaauaucugauauguc	chr13:46948522-46948821(-)$1	299	139	165	12.7747
AGCUUAGUCACAAAGGGAUUUGAUUG	chr2:234197397-234197604(+)$1	207	112	138	15.5819
ggagucgggaauggcccccaggcucu	chr20:62338329-62338606(-)$1	277	24	50	12.9974
AGCUUAGUCACAAAGGGAUUUGAUUG	chr2:234197411-234197624(+)$1	213	98	124	16.1305
AGUGCCUGUGACCGGGGCAGGGACAU	chr21:47559219-47559483(-)$1	264	189	215	13.3271
UCACAUGUGGGGCCUAAACAUUUACU	chr18:9518118-9518329(-)$1	211	48	74	11.8661
GCACAGGGUUGGUGGUACCCUCGAGC	chr14:95999825-96000053(-)$1	228	106	132	18.1487
GCACAGGGUUGGUGGUACCCUCGAGC	chr14:95999772-95999985(-)$1	213	38	64	18.1487
gagagacaacugUAACUUGUUUCCAU	chr1:205535769-205535991(+)$1	222	181	207	16.0003
AUCCCGUGGAAUCCGACCCGGCCUGA	chr1:6705940-6706240(-)$1	300	235	261	13.8194
GCUACCUCUUUUUAAUAGGGGUGAUU	chr12:6619387-6619596(+)$1	209	154	180	15.2012
GGCUGCUUUAGGGAUCAAGGCUGCUU	chr17:79817168-79817407(-)$1	239	93	119	15.9102
CGACUUGGUUAGGUAUGCCAGGAGAG	chr17:38183757-38183968(-)$1	211	29	55	14.6610
GCACAGGGUUGGUGGUACCCUCGAGC	chr14:95999820-96000023(-)$1	203	76	102	18.1487
CCGUCACAUUUAAGUCAUGUGUAUGG	chr2:234184394-234184601(+)$1	207	67	93	15.9221
CCGAGCUGGACCCGGACCGGUUUUGG	chr18:47340403-47340607(+)$1	204	3	29	14.1956
AUUAGUUAUCUAUGAUUAUAACGCGU	chr3:160232594-160232824(-)$1	230	180	206	9.5779
CAUUGCCACCUACUUCGUGGCAUCUA	chr9:137029550-137029774(-)$1	224	175	201	14.3411
UGUUCUCUGAAAUUUGCGGAAUCAAA	chr14:81668994-81669204(-)$1	210	135	161	14.0747
UGUUCUCUGAAAUUUGCGGAAUCAAA	chr14:81668975-81669194(-)$1	219	125	151	14.0747
GCACAGGGUUGGUGGUACCCUCGAGC	chr14:95999798-96000012(-)$1	214	65	91	18.1487
AGCUUAGUCACAAAGGGAUUUGAUUG	chr2:234197424-234197658(+)$1	234	85	111	16.1305
GUGGUGGUGGAUUAUACAUGGCUUUC	chr14:23239503-23239769(+)$1	266	74	100	14.6378
CGACUUGGUUAGGUAUGCCAGGAGAG	chr17:38183722-38183957(-)$1	235	18	44	14.6610
AGCUUAGUCACAAAGGGAUUUGAUUG	chr2:234197404-234197611(+)$1	207	105	131	15.5819
GCUACCUCUUUUUAAUAGGGGUGAUU	chr12:6619383-6619587(+)$1	204	158	184	15.2012
cccaugguugccuaagaaaccagucc	chr19:37503099-37503310(+)$1	211	172	198	9.3472
CACGUGUAUGUCUGGGAGUACAAAUG	chr7:98479339-98479556(+)$1	217	67	93	9.8344

#DB
((..(((((.......))))).))))	chr17:18965298-18965547(+)$1	1	172	198	16.6967
.((((.(((.......))).)))).)	chr1:245207208-245207422(+)$1	1	141	167	12.7163
(((((((((.......))))).))))	chr2:234184368-234184594(+)$1	1	93	119	15.9221
(...(((((.......))))))).))	chr14:95999818-96000020(-)$1	1	73	99	18.1487
...((((((.......))))))..))	chr14:96850951-96851190(+)$1	1	72	98	13.2371
((((.(.((.......))))))))))	chr19:49606592-49606852(+)$1	1	13	39	12.9829
(...(((((........)))))..))	chr2:234197358-234197569(+)$1	1	133	159	10.8742
(...(((((.......))))))).))	chr14:95999787-95999998(-)$1	1	51	77	18.1487
(.(((.(((.......))).))).))	chr17:79958114-79958352(+)$1	1	143	169	14.1886
((...((((.......))))...)))	chr2:234197387-234197597(+)$1	1	122	148	16.1305
(((((((((.......))))).))))	chr2:234184430-234184638(+)$1	1	31	57	15.9221
(...(((((........)))))..))	chr2:234197339-234197548(+)$1	1	152	178	10.8742
(...(((((.......))))))).))	chr14:95999812-96000018(-)$1	1	71	97	18.1487
(.(((((((.......))))))).))	chr12:6619371-6619583(+)$1	1	170	196	15.2012
(...(((((......)))))...)))	chr7:2674519-2674784(+)$1	1	106	132	10.0456
((.((((.........)))).)))))	chr12:120730931-120731138(-)$1	1	38	64	10.5937
)).((((((.......))))))((((	chr13:46948522-46948821(-)$1	1	139	165	12.7747
((...((((.......))))...)))	chr2:234197397-234197604(+)$1	1	112	138	15.5819
(.(((((((.......))).))))))	chr20:62338329-62338606(-)$1	1	24	50	12.9974
((...((((.......))))...)))	chr2:234197411-234197624(+)$1	1	98	124	16.1305
.((.(((((.......))))).))..	chr21:47559219-47559483(-)$1	1	189	215	13.3271
....((((.........))))....)	chr18:9518118-9518329(-)$1	1	48	74	11.8661
(...(((((.......))))))).))	chr14:95999825-96000053(-)$1	1	106	132	18.1487
(...(((((.......))))))).))	chr14:95999772-95999985(-)$1	1	38	64	18.1487
((..(((((.......))))))))))	chr1:205535769-205535991(+)$1	1	181	207	16.0003
(..(((.((.......)))))..)))	chr1:6705940-6706240(-)$1	1	235	261	13.8194
(.(((((((.......))))))).))	chr12:6619387-6619596(+)$1	1	154	180	15.2012
(((.(((((.......))))).))))	chr17:79817168-79817407(-)$1	1	93	119	15.9102
...((((((.......))))))))))	chr17:38183757-38183968(-)$1	1	29	55	14.6610
(...(((((.......))))))).))	chr14:95999820-96000023(-)$1	1	76	102	18.1487
(((((((((.......))))).))))	chr2:234184394-234184601(+)$1	1	67	93	15.9221
(((((((((.......)))))))..)	chr18:47340403-47340607(+)$1	1	3	29	14.1956
((..(((((........)))))..))	chr3:160232594-160232824(-)$1	1	180	206	9.5779
...((((((.......))))))))))	chr9:137029550-137029774(-)$1	1	175	201	14.3411
((((.((((.......))))....))	chr14:81668994-81669204(-)$1	1	135	161	14.0747
((((.((((.......))))....))	chr14:81668975-81669194(-)$1	1	125	151	14.0747
(...(((((.......))))))).))	chr14:95999798-96000012(-)$1	1	65	91	18.1487
((...((((.......))))...)))	chr2:234197424-234197658(+)$1	1	85	111	16.1305
(.(((.(((.......))).))).))	chr14:23239503-23239769(+)$1	1	74	100	14.6378
...((((((.......))))))))))	chr17:38183722-38183957(-)$1	1	18	44	14.6610
((...((((.......))))...)))	chr2:234197404-234197611(+)$1	1	105	131	15.5819
(.(((((((.......))))))).))	chr12:6619383-6619587(+)$1	1	158	184	15.2012
....(((((........)))))))).	chr19:37503099-37503310(+)$1	1	172	198	9.3472
((..(((((........)))))..))	chr7:98479339-98479556(+)$1	1	67	93	9.8344

#PSSM
b : 0.22	c : 0.18	f : 0.13	e : 0.09	h : 0.09	d : 0.06	$ : 0.04	# : 0.04	[ : 0.02	% : 0.02	g : 0.02	: : 0.02	" : 0.02	
" : 0.25	f : 0.13	[ : 0.13	e : 0.09	d : 0.06	b : 0.06	h : 0.06	$ : 0.04	# : 0.04	% : 0.02	g : 0.02	! : 0.02	c : 0.02	
" : 0.36	! : 0.11	g : 0.11	d : 0.09	f : 0.06	c : 0.04	$ : 0.04	# : 0.04	% : 0.02	[ : 0.02	: : 0.02	b : 0.02	e : 0.02	
" : 0.34	f : 0.18	d : 0.11	g : 0.11	! : 0.09	c : 0.06	[ : 0.04	$ : 0.04	
e : 0.45	f : 0.11	" : 0.11	d : 0.09	g : 0.09	[ : 0.06	c : 0.06	
e : 0.45	d : 0.22	f : 0.11	g : 0.09	[ : 0.06	a : 0.02	c : 0.02	
e : 0.45	d : 0.20	f : 0.11	c : 0.09	g : 0.09	[ : 0.04	
e : 0.45	d : 0.18	f : 0.11	c : 0.09	g : 0.09	b : 0.04	r : 0.02	
e : 0.45	d : 0.15	f : 0.11	c : 0.09	g : 0.09	b : 0.04	r : 0.04	
p : 0.81	q : 0.11	r : 0.04	o : 0.02	
p : 0.81	q : 0.11	r : 0.04	o : 0.02	
p : 0.81	q : 0.11	r : 0.04	o : 0.02	
p : 0.81	q : 0.11	r : 0.04	o : 0.02	
p : 0.81	q : 0.11	r : 0.04	o : 0.02	
p : 0.81	q : 0.11	r : 0.04	o : 0.02	
p : 0.81	q : 0.11	r : 0.04	e : 0.02	
e : 0.34	d : 0.18	f : 0.11	q : 0.11	c : 0.09	g : 0.09	b : 0.04	r : 0.02	
e : 0.45	d : 0.20	f : 0.11	c : 0.09	g : 0.09	b : 0.04	
e : 0.45	d : 0.20	c : 0.11	f : 0.11	g : 0.09	a : 0.02	
e : 0.45	d : 0.20	f : 0.11	g : 0.11	] : 0.09	c : 0.02	
e : 0.43	3 : 0.13	f : 0.11	g : 0.11	d : 0.06	c : 0.06	4 : 0.04	] : 0.02	
b : 0.18	] : 0.13	3 : 0.13	f : 0.11	g : 0.11	e : 0.11	4 : 0.06	d : 0.04	c : 0.04	h : 0.02	2 : 0.02	
b : 0.22	2 : 0.13	g : 0.13	3 : 0.13	f : 0.11	c : 0.06	4 : 0.06	e : 0.04	d : 0.04	h : 0.02	
] : 0.27	f : 0.18	2 : 0.13	e : 0.06	c : 0.06	h : 0.06	4 : 0.06	d : 0.04	g : 0.04	b : 0.04	
b : 0.20	f : 0.18	c : 0.18	e : 0.11	h : 0.09	d : 0.06	g : 0.04	] : 0.02	i : 0.02	: : 0.02	4 : 0.02	2 : 0.02	
b : 0.22	f : 0.18	c : 0.18	e : 0.11	d : 0.09	h : 0.09	g : 0.04	i : 0.02	: : 0.02	] : 0.02	

#score	638.2778283286202
#seq	44
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_transcript_m1_run2.txt

#BEAR
cc[ddddyyyyyyyyyyyyyyyydd	chr11:46404128-46404389(+)$1	261	67	92	21.5984
ggg[cccxxxxxxxxxxxxxxxccc	chr8:48826441-48826726(-)$1	285	105	130	18.5096
dddd[bbtttttttttttbb]dddd	chr2:232320045-232320284(-)$1	239	2	27	20.9601
ddddyyyyyyyyyyyyyyyydddd:	chr2:172848131-172848386(+)$1	255	0	25	19.9170
===[ddddtttttttttttdddd==	chr7:96318063-96318341(-)$1	278	16	41	22.5810
""ddddvvvvvvvvvvvvvdddd33	chr7:27833841-27834126(+)$1	285	96	121	22.6947
#eeeeewwwwwwwwwwwwwweeeee	chr5:149829165-149829402(-)$1	237	26	51	22.2585
(eeeeevvvvvvvvvvvvveeeee6	chr19:13051254-13051540(+)$1	286	115	140	21.6072
d!!cccyyyyyyyyyyyyyyyyccc	chr17:73034917-73035259(-)$1	342	177	202	22.0951
ffffffvvvvvvvvvvvvvffffff	chr11:108810899-108811317(+)$1	418	328	353	22.3541
eeee[aauuuuuuuuuuuua]a]ee	chr1:35653534-35653792(-)$1	258	96	121	23.7220
cc!!ddddtttttttttttdddd]c	chr1:154130026-154130265(-)$1	239	22	47	22.4355
!!ddddvvvvvvvvvvvvvdddd33	chr2:47388760-47389021(-)$1	261	184	209	22.8940
ddfffffftttttttttttffffff	chr11:118621899-118622164(-)$1	265	214	239	21.7088
[a[ddddtttttttttttdddd]a]	chr11:65831076-65831301(+)$1	225	37	62	22.0564
eeeeeeeuuuuuuuuuuuueeeee]	chr19:46366169-46366438(-)$1	269	115	140	23.5649
HHeeeeeuuuuuuuuuuuueeeee:	chr5:145524086-145524326(-)$1	240	212	237	21.2182
e!!ddddyyyyyyyyyyyyyyyydd	chr12:6692417-6692641(-)$1	224	119	144	21.6059
cca[ddddtttttttttttdddd22	chr6:32945891-32946177(+)$1	286	45	70	21.8560
ddddcccvvvvvvvvvvvvvccc]d	chr1:182355340-182355618(-)$1	278	97	122	23.0020
cc[dddduuuuuuuuuuuudddd]c	chr11:27360336-27360683(-)$1	347	219	244	23.7818
:eeeeevvvvvvvvvvvvveeeeeF	chr1:38434938-38435192(-)$1	254	169	194	21.3992
ggg[ddddtttttttttttdddd]g	chr11:484169-484414(+)$1	245	200	225	22.5982
hhhhhhwwwwwwwwwwwwwwhhhhh	chr9:139732333-139732557(+)$1	224	78	103	20.0453
[eeeeeyyyyyyyyyyyyyyyyeee	chr7:132709204-132709450(-)$1	246	106	131	22.1386
gggggggwwwwwwwwwwwwwwgggg	chr11:77330552-77330771(-)$1	219	149	174	22.3578
fff[bbwwwwwwwwwwwwwwbbfff	chr6:31699895-31700172(-)$1	277	153	178	21.4016
!ffffffuuuuuuuuuuuuffffff	chr9:127998643-127998885(-)$1	242	61	86	23.3517
d[ccc[bbtttttttttttbbccc]	chr12:133350640-133350896(-)$1	256	8	33	21.9411
d[a[cccuuuuuuuuuuuuccca]d	chr12:120934216-120934485(+)$1	269	218	243	23.8643
[bb[cccuuuuuuuuuuuuccc]bb	chr5:139905851-139906080(+)$1	229	89	114	22.7759
=======yyyyyyyyyyyyyyyy==	chr6:114262771-114263033(-)$1	262	37	62	22.0052
cc[ddddwwwwwwwwwwwwwwdddd	chr3:193380529-193380852(+)$1	323	86	111	22.1293
ffffffattttttttttta]fffff	chr9:127620160-127620384(-)$1	224	34	59	22.2626
ggggggguuuuuuuuuuuugggggg	chr17:8402603-8402858(-)$1	255	23	48	23.6463
ffffffyyyyyyyyyyyyyyyyfff	chr7:1489724-1489980(-)$1	256	29	54	21.8340
ddd[a[bbtttttttttttbb]a]d	chr9:33276350-33276586(+)$1	236	124	149	21.5511
dd[ddddvvvvvvvvvvvvvdddd]	chr12:46752291-46752609(-)$1	318	91	116	23.0974
gggggggtttttttttttggggggg	chr10:79796911-79797115(+)$1	204	15	40	21.8316
eeeddddvvvvvvvvvvvvvdddd2	chr2:27606133-27606417(-)$1	284	215	240	22.7737
ff[ddddvvvvvvvvvvvvvddddf	chr5:96367911-96368179(+)$1	268	66	91	23.0875
!ffffffvvvvvvvvvvvvvfffff	chr19:10270630-10270839(-)$1	209	41	66	22.9242
d"""cccuuuuuuuuuuuuccc444	chr2:99980746-99980965(+)$1	219	105	130	23.5582
ee[dddduuuuuuuuuuuudddd]e	chr11:65829313-65829568(+)$1	255	25	50	23.7279
gggggggwwwwwwwwwwwwwwgggg	chr11:70181599-70181885(+)$1	286	87	112	22.3578
f!!bbwwwwwwwwwwwwwwbb22ff	chr20:52835457-52835747(+)$1	290	122	147	20.3247
eeeeeeeettttttttttteeeee]	chr6:26156922-26157169(+)$1	247	3	28	22.2400
===:cccvvvvvvvvvvvvvccccc	chr2:232327847-232328126(-)$1	279	98	123	22.3016
gggggggwwwwwwwwwwwwwwgggg	chr5:34953931-34954204(+)$1	273	153	178	22.3578
iiiiiiiuuuuuuuuuuuuiiiiii	chr16:57188049-57188340(-)$1	291	259	284	23.5811
!!eeeeevvvvvvvvvvvvveeeee	chr5:140966545-140966852(-)$1	307	188	213	23.2474
eeee[bbwwwwwwwwwwwwwwbb]e	chr19:41265360-41265612(+)$1	252	189	214	21.4072
!!eeeeeyyyyyyyyyyyyyyyyee	chr17:60556155-60556495(+)$1	340	167	192	21.8425
======bbtttttttttttbb]===	chr2:131883225-131883586(+)$1	361	94	119	22.2061
dddd[ccctttttttttttccc]dd	chr17:7481569-7481807(+)$1	238	156	181	22.1934
bb[eeeeettttttttttteeeee]	chr6:2948658-2948951(-)$1	293	103	128	21.9167
bffffffuuuuuuuuuuuuffffff	chr11:129997560-129997798(+)$1	238	208	233	22.9683
dddd[bbuuuuuuuuuuuubb333d	chr19:42734471-42734736(-)$1	265	29	54	22.6659
"ffffffuuuuuuuuuuuuffffff	chr6:33258000-33258229(+)$1	229	49	74	23.2527
[ffffffuuuuuuuuuuuuffffff	chr19:39950431-39950668(+)$1	237	78	103	23.3318
ffffffwwwwwwwwwwwwwwfffff	chr12:6692264-6692484(-)$1	220	132	157	21.9666
:ffffffuuuuuuuuuuuuffffff	chr21:34921975-34922219(+)$1	244	124	149	22.2673

#otherMatches

#Seq PSSM
GUCCGCCAAGGCACCCUGAAGAAGG	chr11:46404128-46404389(+)$1	261	67	92	21.5984
CGUCCUCAGAUGAGAUGAUGAAGAG	chr8:48826441-48826726(-)$1	285	105	130	18.5096
CCAUGGAAGACGGUGAAAUUGAUGG	chr2:232320045-232320284(-)$1	239	2	27	20.9601
UGUCUCAGACCAGAAGAACUGACAA	chr2:172848131-172848386(+)$1	255	0	25	19.9170
GUUUAUUAUAAAGAAUACCUAGUGA	chr7:96318063-96318341(-)$1	278	16	41	22.5810
AUAGGCUAAUAAUAAUAAUGUCUUC	chr7:27833841-27834126(+)$1	285	96	121	22.6947
GACCUCGCCCCGUGACCUCAGAGGU	chr5:149829165-149829402(-)$1	237	26	51	22.2585
GAGCAUAUCCCUGACCCUGAUGCUA	chr19:13051254-13051540(+)$1	286	115	140	21.6072
AAUUAGACAAGAAAAAGUAUCCCUA	chr17:73034917-73035259(-)$1	342	177	202	22.0951
GGGGCACUUAGGUACCAUAUGCCCC	chr11:108810899-108811317(+)$1	418	328	353	22.3541
UCUAGGCAAGAGGAGGAACGACGUA	chr1:35653534-35653792(-)$1	258	96	121	23.7220
AAAUUUACUUCUAGUUCUUGUAACU	chr1:154130026-154130265(-)$1	239	22	47	22.4355
AUUCUUCACUUUGAUUUUUAAGAUA	chr2:47388760-47389021(-)$1	261	184	209	22.8940
AGACUGGGUUACAUAUGCCUCCAGU	chr11:118621899-118622164(-)$1	265	214	239	21.7088
UGGAGGCUUUUCAUCAGUGCCUGCU	chr11:65831076-65831301(+)$1	225	37	62	22.0564
GAGCUGCGGUGAGCGGGAGGCGGCG	chr19:46366169-46366438(-)$1	269	115	140	23.5649
UUGUCCACUCCCAGGUACUUGGAUU	chr5:145524086-145524326(-)$1	240	212	237	21.2182
AAAUCAUUAAACAGGAAGAAAGUGU	chr12:6692417-6692641(-)$1	224	119	144	21.6059
CCCAGGGUCCAAUAUCCAAGCCCAA	chr6:32945891-32946177(+)$1	286	45	70	21.8560
CACCUGUAAACGGAUAAUGGACAUG	chr1:182355340-182355618(-)$1	278	97	122	23.0020
ACCUGUGAUAAGUCAGCCACACAAG	chr11:27360336-27360683(-)$1	347	219	244	23.7818
AAGGAAUUCAGAGCCAUUUUUCCUG	chr1:38434938-38435192(-)$1	254	169	194	21.3992
uggguccuuacugaauauuaggaac	chr11:484169-484414(+)$1	245	200	225	22.5982
CCCGCCAGGGACGAGAAGAAGGUGG	chr9:139732333-139732557(+)$1	224	78	103	20.0453
AUUGGAGCAAGCCAAGAAAGAAUCC	chr7:132709204-132709450(-)$1	246	106	131	22.1386
UGAUCAUGAAAAUCAUAUGAAAUGA	chr11:77330552-77330771(-)$1	219	149	174	22.3578
UGUUGCCAAAGUUACACAUAGUACA	chr6:31699895-31700172(-)$1	277	153	178	21.4016
ACUUUUGUUAGGAAAAAAUUGAAAG	chr9:127998643-127998885(-)$1	242	61	86	23.3517
GAGGCCAGCUCUUCCAACCCUGCCA	chr12:133350640-133350896(-)$1	256	8	33	21.9411
CUGACAGGUCCCGGGAAUACUGCUG	chr12:120934216-120934485(+)$1	269	218	243	23.8643
UGGAUGUGAAUUCCUCUAAAUACCC	chr5:139905851-139906080(+)$1	229	89	114	22.7759
ugaaauaauauauauacauuuuaua	chr6:114262771-114263033(-)$1	262	37	62	22.0052
UCACAAUGAAACCAAGAAUGAAUUG	chr3:193380529-193380852(+)$1	323	86	111	22.1293
CCAGGGCAAGAAGUACAAGCCCCUG	chr9:127620160-127620384(-)$1	224	34	59	22.2626
GAAAAUAACUAGUGAAUUAUGUUUU	chr17:8402603-8402858(-)$1	255	23	48	23.6463
UUUGGACAUCAUGUUUUUAUCUUCC	chr7:1489724-1489980(-)$1	256	29	54	21.8340
GAUAUGAUGGAAGAUGCAAAUGAAA	chr9:33276350-33276586(+)$1	236	124	149	21.5511
CAUAUAUUGUCUGUCCAUAUGUAUU	chr12:46752291-46752609(-)$1	318	91	116	23.0974
CUGGAUGUACUCUUUUCUCAUUCAG	chr10:79796911-79797115(+)$1	204	15	40	21.8316
AGGGUCUUUCUCUCUGUCCCAGACU	chr2:27606133-27606417(-)$1	284	215	240	22.7737
ACUAAGUUAUAUAUAUAUUUGCUUG	chr5:96367911-96368179(+)$1	268	66	91	23.0875
UUUUGAUAUUUUCUGAAACAAUUAA	chr19:10270630-10270839(-)$1	209	41	66	22.9242
CCGAAGCUACUCUUAAACUGCUACA	chr2:99980746-99980965(+)$1	219	105	130	23.5582
AUCCUGUUCUCUUUUUCCUGCAGAA	chr11:65829313-65829568(+)$1	255	25	50	23.7279
AUGAACGAAGAACAUAAUAAACGUU	chr11:70181599-70181885(+)$1	286	87	112	22.3578
ACGCCUUAGAAUCCAGAGUGGAAUC	chr20:52835457-52835747(+)$1	290	122	147	20.3247
GUUCCUUCAAACUCAACAAGAAGGC	chr6:26156922-26157169(+)$1	247	3	28	22.2400
GGCAGGUAAAAAUCAAGGUGACCCC	chr2:232327847-232328126(-)$1	279	98	123	22.3016
ACCUGCUGAACCACAAACAAUGGUA	chr5:34953931-34954204(+)$1	273	153	178	22.3578
AUUUUUAACCAAUCCAAUCUAAAAA	chr16:57188049-57188340(-)$1	291	259	284	23.5811
AGUCAUUGCAAGAUGUUUCAGAUGA	chr5:140966545-140966852(-)$1	307	188	213	23.2474
CCAGACCUUCCUCAGCCACAUGGAC	chr19:41265360-41265612(+)$1	252	189	214	21.4072
CUGGGCCCUCCUGCGCCUCCCUUGG	chr17:60556155-60556495(+)$1	340	167	192	21.8425
UUCCAGGUACUAUUUUGAAGCGCUG	chr2:131883225-131883586(+)$1	361	94	119	22.2061
GAGGACUCUUCGAGACAUUGAGACC	chr17:7481569-7481807(+)$1	238	156	181	22.1934
CGCGGUUUAAACUAGAGGAAAGCUA	chr6:2948658-2948951(-)$1	293	103	128	21.9167
CCUGACCAUUGGAAAAUACGGUCAG	chr11:129997560-129997798(+)$1	238	208	233	22.9683
GAGGACCUCCUACCCCCUUGGCCCC	chr19:42734471-42734736(-)$1	265	29	54	22.6659
AGGGACCUGUACUAGCCAUGGUUCU	chr6:33258000-33258229(+)$1	229	49	74	23.2527
AAAUCUGCCUCUCAUCUUCCAGAUU	chr19:39950431-39950668(+)$1	237	78	103	23.3318
CGGCCCCGCCCCCCACCCAUGGGCC	chr12:6692264-6692484(-)$1	220	132	157	21.9666
AACCUCCUGUAGUAUCAAUGGAGGU	chr21:34921975-34922219(+)$1	244	124	149	22.2673

#DB
((.((((................))	chr11:46404128-46404389(+)$1	1	67	92	21.5984
(((.(((...............)))	chr8:48826441-48826726(-)$1	1	105	130	18.5096
((((.((...........)).))))	chr2:232320045-232320284(-)$1	1	2	27	20.9601
((((................)))).	chr2:172848131-172848386(+)$1	1	0	25	19.9170
(((.((((...........))))))	chr7:96318063-96318341(-)$1	1	16	41	22.5810
..((((.............))))..	chr7:27833841-27834126(+)$1	1	96	121	22.6947
.(((((..............)))))	chr5:149829165-149829402(-)$1	1	26	51	22.2585
.(((((.............))))).	chr19:13051254-13051540(+)$1	1	115	140	21.6072
(..(((................)))	chr17:73034917-73035259(-)$1	1	177	202	22.0951
((((((.............))))))	chr11:108810899-108811317(+)$1	1	328	353	22.3541
((((.((............).).))	chr1:35653534-35653792(-)$1	1	96	121	23.7220
((..((((...........)))).)	chr1:154130026-154130265(-)$1	1	22	47	22.4355
..((((.............))))..	chr2:47388760-47389021(-)$1	1	184	209	22.8940
))((((((...........))))))	chr11:118621899-118622164(-)$1	1	214	239	21.7088
.(.((((...........)))).).	chr11:65831076-65831301(+)$1	1	37	62	22.0564
(((((((............))))).	chr19:46366169-46366438(-)$1	1	115	140	23.5649
))(((((............))))).	chr5:145524086-145524326(-)$1	1	212	237	21.2182
(..((((................))	chr12:6692417-6692641(-)$1	1	119	144	21.6059
(((.((((...........))))..	chr6:32945891-32946177(+)$1	1	45	70	21.8560
(((((((.............))).)	chr1:182355340-182355618(-)$1	1	97	122	23.0020
((.((((............)))).)	chr11:27360336-27360683(-)$1	1	219	244	23.7818
.(((((.............))))))	chr1:38434938-38435192(-)$1	1	169	194	21.3992
(((.((((...........)))).)	chr11:484169-484414(+)$1	1	200	225	22.5982
((((((..............)))))	chr9:139732333-139732557(+)$1	1	78	103	20.0453
.(((((................)))	chr7:132709204-132709450(-)$1	1	106	131	22.1386
(((((((..............))))	chr11:77330552-77330771(-)$1	1	149	174	22.3578
(((.((..............)))))	chr6:31699895-31700172(-)$1	1	153	178	21.4016
.((((((............))))))	chr9:127998643-127998885(-)$1	1	61	86	23.3517
(.(((.((...........))))).	chr12:133350640-133350896(-)$1	1	8	33	21.9411
(.(.(((............)))).)	chr12:120934216-120934485(+)$1	1	218	243	23.8643
.((.(((............))).))	chr5:139905851-139906080(+)$1	1	89	114	22.7759
(((((((................))	chr6:114262771-114263033(-)$1	1	37	62	22.0052
((.((((..............))))	chr3:193380529-193380852(+)$1	1	86	111	22.1293
(((((((...........).)))))	chr9:127620160-127620384(-)$1	1	34	59	22.2626
(((((((............))))))	chr17:8402603-8402858(-)$1	1	23	48	23.6463
((((((................)))	chr7:1489724-1489980(-)$1	1	29	54	21.8340
(((.(.((...........)).).)	chr9:33276350-33276586(+)$1	1	124	149	21.5511
((.((((.............)))).	chr12:46752291-46752609(-)$1	1	91	116	23.0974
(((((((...........)))))))	chr10:79796911-79797115(+)$1	1	15	40	21.8316
(((((((.............)))).	chr2:27606133-27606417(-)$1	1	215	240	22.7737
((.((((.............)))))	chr5:96367911-96368179(+)$1	1	66	91	23.0875
.((((((.............)))))	chr19:10270630-10270839(-)$1	1	41	66	22.9242
(...(((............)))...	chr2:99980746-99980965(+)$1	1	105	130	23.5582
((.((((............)))).)	chr11:65829313-65829568(+)$1	1	25	50	23.7279
(((((((..............))))	chr11:70181599-70181885(+)$1	1	87	112	22.3578
(..((..............))..))	chr20:52835457-52835747(+)$1	1	122	147	20.3247
((((((((...........))))).	chr6:26156922-26157169(+)$1	1	3	28	22.2400
))).(((.............)))((	chr2:232327847-232328126(-)$1	1	98	123	22.3016
(((((((..............))))	chr5:34953931-34954204(+)$1	1	153	178	22.3578
(((((((............))))))	chr16:57188049-57188340(-)$1	1	259	284	23.5811
..(((((.............)))))	chr5:140966545-140966852(-)$1	1	188	213	23.2474
((((.((..............)).)	chr19:41265360-41265612(+)$1	1	189	214	21.4072
..(((((................))	chr17:60556155-60556495(+)$1	1	167	192	21.8425
((((((((...........)).)))	chr2:131883225-131883586(+)$1	1	94	119	22.2061
((((.(((...........))).))	chr17:7481569-7481807(+)$1	1	156	181	22.1934
((.(((((...........))))).	chr6:2948658-2948951(-)$1	1	103	128	21.9167
(((((((............))))))	chr11:129997560-129997798(+)$1	1	208	233	22.9683
((((.((............))...)	chr19:42734471-42734736(-)$1	1	29	54	22.6659
.((((((............))))))	chr6:33258000-33258229(+)$1	1	49	74	23.2527
.((((((............))))))	chr19:39950431-39950668(+)$1	1	78	103	23.3318
((((((..............)))))	chr12:6692264-6692484(-)$1	1	132	157	21.9666
.((((((............))))))	chr21:34921975-34922219(+)$1	1	124	149	22.2673

#PSSM
d : 0.19	g : 0.11	f : 0.11	e : 0.11	c : 0.08	! : 0.08	= : 0.06	[ : 0.06	" : 0.03	: : 0.03	b : 0.03	# : 0.01	( : 0.01	H : 0.01	h : 0.01	i : 0.01	
f : 0.19	e : 0.16	d : 0.12	g : 0.11	! : 0.09	c : 0.08	= : 0.06	" : 0.03	[ : 0.03	b : 0.03	a : 0.01	H : 0.01	h : 0.01	i : 0.01	
e : 0.19	f : 0.19	[ : 0.12	d : 0.12	g : 0.11	= : 0.06	! : 0.06	a : 0.03	h : 0.01	c : 0.01	b : 0.01	" : 0.01	i : 0.01	
d : 0.25	e : 0.19	f : 0.17	[ : 0.12	g : 0.08	c : 0.03	= : 0.03	! : 0.01	h : 0.01	" : 0.01	b : 0.01	: : 0.01	i : 0.01	
d : 0.24	f : 0.17	e : 0.16	c : 0.12	[ : 0.08	g : 0.08	b : 0.03	= : 0.03	y : 0.01	h : 0.01	a : 0.01	i : 0.01	
d : 0.24	f : 0.17	e : 0.16	c : 0.12	g : 0.08	b : 0.06	[ : 0.03	= : 0.03	y : 0.01	a : 0.01	h : 0.01	w : 0.01	i : 0.01	
d : 0.20	c : 0.11	f : 0.11	b : 0.09	e : 0.09	v : 0.08	w : 0.08	g : 0.08	y : 0.06	a : 0.03	= : 0.01	i : 0.01	
u : 0.25	v : 0.19	w : 0.16	y : 0.12	t : 0.06	d : 0.06	b : 0.04	e : 0.03	x : 0.01	f : 0.01	c : 0.01	
u : 0.25	t : 0.24	v : 0.19	w : 0.16	y : 0.12	x : 0.01	
u : 0.25	t : 0.24	v : 0.19	w : 0.16	y : 0.12	x : 0.01	
u : 0.25	t : 0.24	v : 0.19	w : 0.16	y : 0.12	x : 0.01	
u : 0.25	t : 0.24	v : 0.19	w : 0.16	y : 0.12	x : 0.01	
u : 0.25	t : 0.24	v : 0.19	w : 0.16	y : 0.12	x : 0.01	
u : 0.25	t : 0.24	v : 0.19	w : 0.16	y : 0.12	x : 0.01	
u : 0.25	t : 0.24	v : 0.19	w : 0.16	y : 0.12	x : 0.01	
u : 0.25	t : 0.24	v : 0.19	w : 0.16	y : 0.12	x : 0.01	
u : 0.25	t : 0.24	v : 0.19	w : 0.16	y : 0.12	x : 0.01	
u : 0.25	t : 0.24	v : 0.19	w : 0.16	y : 0.12	x : 0.01	
u : 0.25	v : 0.19	t : 0.17	w : 0.16	y : 0.12	x : 0.01	b : 0.01	d : 0.01	a : 0.01	g : 0.01	
d : 0.14	w : 0.14	y : 0.12	f : 0.11	v : 0.11	b : 0.09	e : 0.09	c : 0.06	g : 0.03	x : 0.01	a : 0.01	] : 0.01	i : 0.01	
d : 0.20	f : 0.16	e : 0.12	y : 0.11	c : 0.09	b : 0.09	w : 0.08	] : 0.03	g : 0.03	x : 0.01	h : 0.01	i : 0.01	
d : 0.24	f : 0.16	e : 0.12	y : 0.11	c : 0.11	g : 0.08	b : 0.03	] : 0.03	x : 0.01	a : 0.01	h : 0.01	2 : 0.01	i : 0.01	3 : 0.01	
d : 0.22	f : 0.19	e : 0.14	c : 0.08	g : 0.08	y : 0.06	] : 0.06	a : 0.03	h : 0.01	4 : 0.01	2 : 0.01	i : 0.01	b : 0.01	= : 0.01	3 : 0.01	
f : 0.20	e : 0.17	d : 0.14	] : 0.12	g : 0.08	c : 0.06	= : 0.04	3 : 0.04	a : 0.01	2 : 0.01	h : 0.01	b : 0.01	4 : 0.01	i : 0.01	
f : 0.22	d : 0.14	e : 0.11	] : 0.09	g : 0.09	c : 0.08	= : 0.04	: : 0.03	3 : 0.03	2 : 0.03	6 : 0.01	F : 0.01	h : 0.01	b : 0.01	4 : 0.01	i : 0.01	

#score	1381.156120487947
#seq	62
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_CDS_m2_run1.txt

#BEAR
ddddqqqqqqqqdddd	chr17:41245151-41245403(-)$1	252	207	223	14.7132
ddddqqqqqqqqdddd	chr3:47952206-47952448(-)$1	242	161	177	14.7132
ddddqqqqqqqqdddd	chr11:62291654-62291905(-)$1	251	36	52	14.7132
eeeeqqqqqqqqeeee	chr3:47163771-47164010(-)$1	239	208	224	13.1426
ddddqqqqqqqqdddd	chr11:62297314-62297573(-)$1	259	70	86	14.7132
[cccqqqqqqqqccca	chr13:23910509-23910751(-)$1	242	198	214	13.6101
ddddqqqqqqqqdddd	chr2:109088096-109088376(+)$1	280	158	174	14.7132
:cccqqqqqqqqcccd	chr18:19154138-19154478(-)$1	340	258	274	12.9127
e[bbqqqqqqqqbbee	chr4:104067020-104067291(-)$1	271	19	35	12.9875
ddddqqqqqqqqdddd	chr2:109380719-109380967(+)$1	248	167	183	14.7132
dddaqqqqqqqqa]dd	chr1:214819634-214819916(+)$1	282	127	143	14.0198
ccccqqqqqqqqccc]	chr14:75265750-75266064(+)$1	314	197	213	13.6241
e[bbqqqqqqqqbb]e	chr22:22842699-22842989(-)$1	290	11	27	12.9350
ddddqqqqqqqqdddd	chr1:203768885-203769154(+)$1	269	125	141	14.7132
e[bbqqqqqqqqbbee	chr11:62286358-62286616(-)$1	258	215	231	12.9875
====qqqqqqqq====	chr13:23914631-23914893(-)$1	262	150	166	13.1154
ddddqqqqqqqqdddd	chr4:13602638-13603005(-)$1	367	229	245	14.7132
ggggqqqqqqqqgggg	chr11:62300314-62300611(-)$1	297	255	271	12.7265
ddddqqqqqqqqdddd	chr18:19154036-19154308(-)$1	272	149	165	14.7132
ddbbqqqqqqqqbb]d	chr7:5104865-5105134(+)$1	269	124	140	13.4386
d!!aqqqqqqqqa22d	chr11:62299689-62299969(-)$1	280	126	142	13.0387
=cccqqqqqqqqccc:	chr13:23909901-23910175(-)$1	274	223	239	12.7589
eeeeqqqqqqqqeeee	chr2:109384010-109384316(+)$1	306	199	215	13.1426
ddddqqqqqqqqdddd	chr3:37366591-37366858(+)$1	267	23	39	14.7132
ddddqqqqqqqqdddd	chr13:23911897-23912235(-)$1	338	186	202	14.7132
e[bbqqqqqqqqbbee	chr19:40540461-40540792(-)$1	331	127	143	12.9875
eeeeqqqqqqqqeeee	chr18:9258480-9258777(+)$1	297	24	40	13.1426
d[bbqqqqqqqqbb]d	chr1:39801287-39801526(+)$1	239	211	227	13.3132
ddddqqqqqqqqdddd	chr3:121414284-121414551(-)$1	267	130	146	14.7132
eeeeqqqqqqqqeeee	chr18:9257164-9257426(+)$1	262	148	164	13.1426
eeeeqqqqqqqqeeee	chr15:40916955-40917214(+)$1	259	2	18	13.1426
ddddqqqqqqqqdddd	chr8:94748278-94748531(-)$1	253	176	192	14.7132
[cccqqqqqqqqccc3	chr7:91630816-91631093(+)$1	277	113	129	13.6705
d[bbqqqqqqqqbb]d	chr3:37365781-37366015(+)$1	234	29	45	13.3132
&cccqqqqqqqqcccc	chr11:62287577-62287784(-)$1	207	178	194	12.9931
[cccqqqqqqqqcccf	chr2:109381586-109381827(+)$1	241	84	100	13.4786
ddddqqqqqqqqdddd	chr4:13603226-13603558(-)$1	332	98	114	14.7132
ddddqqqqqqqqdddd	chr4:13602016-13602281(-)$1	265	15	31	14.7132
ccccqqqqqqqqccc]	chr3:15084401-15084659(-)$1	258	76	92	13.6241
d!!aqqqqqqqqa22d	chr11:62288283-62288548(-)$1	265	171	187	13.0387
!cccqqqqqqqqccc2	chr9:99580686-99580952(-)$1	266	109	125	13.5558
d[bbqqqqqqqqbb]d	chr1:46072982-46073241(+)$1	259	155	171	13.3132
#cccqqqqqqqqccc5	chr13:23908429-23908690(-)$1	261	234	250	12.7708
ddddqqqqqqqqdddd	chr5:112177766-112178081(+)$1	315	162	178	14.7132
dcccqqqqqqqqcccC	chr12:32138699-32138971(+)$1	272	174	190	13.0655
eeeeqqqqqqqqeeee	chr19:58772383-58772637(+)$1	254	77	93	13.1426
Fcccqqqqqqqqccc:	chr12:32137139-32137460(+)$1	321	149	165	12.2505
eeeeqqqqqqqqeeee	chr20:49509185-49509446(-)$1	261	104	120	13.1426
c[bbqqqqqqqqbb]c	chr1:39801439-39801705(+)$1	266	59	75	12.7937
f[bbqqqqqqqqbbff	chr13:23912881-23913175(-)$1	294	261	277	12.3158
ddddqqqqqqqqdddd	chr3:44489775-44490057(-)$1	282	112	128	14.7132
ddddqqqqqqqqdddd	chr15:77473391-77473730(-)$1	339	244	260	14.7132
ddddqqqqqqqqdddd	chr13:23913375-23913631(-)$1	256	172	188	14.7132
##bbqqqqqqqqbb44	chr17:41246386-41246669(-)$1	283	31	47	12.6310
""bbqqqqqqqqbb33	chr1:214819573-214819834(+)$1	261	172	188	12.6650
====qqqqqqqq====	chr3:47951800-47952136(-)$1	336	213	229	13.1154
ddddqqqqqqqqdddd	chr2:109380767-109381073(+)$1	306	119	135	14.7132
ddddqqqqqqqqdddd	chr1:203766802-203767104(+)$1	302	150	166	14.7132
[cccqqqqqqqqccc2	chr11:62295121-62295400(-)$1	279	179	195	13.5124
eeeeqqqqqqqqeeee	chr8:94748331-94748603(-)$1	272	36	52	13.1426
ddddqqqqqqqqdddd	chr13:23913225-23913498(-)$1	273	39	55	14.7132
gcccqqqqqqqqccc2	chr3:37367504-37367741(+)$1	237	65	81	13.4491
ddddqqqqqqqqdddd	chr18:9255706-9256035(+)$1	329	78	94	14.7132
ddddqqqqqqqqdddd	chr4:435963-436286(-)$1	323	254	270	14.7132
"cccqqqqqqqqccc2	chr2:170664937-170665164(+)$1	227	176	192	13.4500
ddddqqqqqqqqdddd	chr11:62286055-62286282(-)$1	227	14	30	14.7132
!cccqqqqqqqqccc]	chr1:39798462-39798740(+)$1	278	62	78	13.7068
ddddqqqqqqqqdddd	chr15:40915353-40915658(+)$1	305	171	187	14.7132
ddddqqqqqqqqdddd	chr1:91405524-91405769(-)$1	245	94	110	14.7132
[cccqqqqqqqqccc]	chr1:39876477-39876782(+)$1	305	48	64	13.6635
ddddqqqqqqqqdddd	chr2:55253875-55254195(-)$1	320	204	220	14.7132
ddddqqqqqqqqdddd	chr11:62297232-62297514(-)$1	282	11	27	14.7132
ddddqqqqqqqqdddd	chr1:197071499-197071747(-)$1	248	178	194	14.7132

#otherMatches

#Seq PSSM
GUUACUGGAAGUUAGC	chr17:41245151-41245403(-)$1	252	207	223	14.7132
GCCUAAAAAGAGAGGC	chr3:47952206-47952448(-)$1	242	161	177	14.7132
GCUUAAUAUCGAAGGC	chr11:62291654-62291905(-)$1	251	36	52	14.7132
UUAAAGAACCAGUUGA	chr3:47163771-47164010(-)$1	239	208	224	13.1426
UCCUAAAAUGAAAGGA	chr11:62297314-62297573(-)$1	259	70	86	14.7132
AUACCCAGGGAAGUAG	chr13:23910509-23910751(-)$1	242	198	214	13.6101
GUUCAGUGUGAAGAAC	chr2:109088096-109088376(+)$1	280	158	174	14.7132
UGAAGUAAUAAAUUCU	chr18:19154138-19154478(-)$1	340	258	274	12.9127
CUCUUAAGAUCCAGGA	chr4:104067020-104067291(-)$1	271	19	35	12.9875
UUUGAAGAAGCCCAGA	chr2:109380719-109380967(+)$1	248	167	183	14.7132
GGCCACAGAACAGAGU	chr1:214819634-214819916(+)$1	282	127	143	14.0198
GGAUGAACAAGAAUCA	chr14:75265750-75266064(+)$1	314	197	213	13.6241
UAAAUACAAAUCUUGA	chr22:22842699-22842989(-)$1	290	11	27	12.9350
UUUAGAAACUUAUAAG	chr1:203768885-203769154(+)$1	269	125	141	14.7132
AAGUGCAGGCAAACUU	chr11:62286358-62286616(-)$1	258	215	231	12.9875
GUUUAAAAAACGAAGC	chr13:23914631-23914893(-)$1	262	150	166	13.1154
AGCUGAGGCUGGAGCU	chr4:13602638-13603005(-)$1	367	229	245	14.7132
UCCUAAACUGAAAGGA	chr11:62300314-62300611(-)$1	297	255	271	12.7265
UGUAGUUCUCAAUGCA	chr18:19154036-19154308(-)$1	272	149	165	14.7132
AUGUCAAACCUCACUG	chr7:5104865-5105134(+)$1	269	124	140	13.4386
CCCCGAUGUUAAGCUG	chr11:62299689-62299969(-)$1	280	126	142	13.0387
CCCAUUUUAAACUGGA	chr13:23909901-23910175(-)$1	274	223	239	12.7589
UGCAUGUGAUUUUGCA	chr2:109384010-109384316(+)$1	306	199	215	13.1426
AUCCUCCUAUUUGGGU	chr3:37366591-37366858(+)$1	267	23	39	14.7132
AGAACGUAAGAUUUCU	chr13:23911897-23912235(-)$1	338	186	202	14.7132
GAGUGUAGGAAGACCU	chr19:40540461-40540792(-)$1	331	127	143	12.9875
GCAAACAGAUUCUUGC	chr18:9258480-9258777(+)$1	297	24	40	13.1426
GCUUGACUUUAAAACC	chr1:39801287-39801526(+)$1	239	211	227	13.3132
AACUGUAUGGCAAGUU	chr3:121414284-121414551(-)$1	267	130	146	14.7132
GUAUUCUCAAAUGUGC	chr18:9257164-9257426(+)$1	262	148	164	13.1426
UUGCUGCAGCCUGUAA	chr15:40916955-40917214(+)$1	259	2	18	13.1426
GUCCAGGAUCUGGGAC	chr8:94748278-94748531(-)$1	253	176	192	14.7132
ACAGUGGAAGAUUUGA	chr7:91630816-91631093(+)$1	277	113	129	13.6705
GAGCAGACAAAAGCAU	chr3:37365781-37366015(+)$1	234	29	45	13.3132
AGUGGACAUCAACACC	chr11:62287577-62287784(-)$1	207	178	194	12.9931
AUGCUACAAGAUGUGU	chr2:109381586-109381827(+)$1	241	84	100	13.4786
AGCAGUUACAAGUGCU	chr4:13603226-13603558(-)$1	332	98	114	14.7132
CGCAAUUACAGAUGUG	chr4:13602016-13602281(-)$1	265	15	31	14.7132
CUACUUUUCUUUGUAU	chr3:15084401-15084659(-)$1	258	76	92	13.6241
UCCCAAGUUUAAGAUG	chr11:62288283-62288548(-)$1	265	171	187	13.0387
AGCCAUAUGUCAGGCC	chr9:99580686-99580952(-)$1	266	109	125	13.5558
UAUGGAUAUAAGUAAA	chr1:46072982-46073241(+)$1	259	155	171	13.3132
UUGUUUAUGAAUACAU	chr13:23908429-23908690(-)$1	261	234	250	12.7708
UGAAACAGCCCCUUCA	chr5:112177766-112178081(+)$1	315	162	178	14.7132
AGCAAGCCCCUCUGCA	chr12:32138699-32138971(+)$1	272	174	190	13.0655
AGGUUAUUCUCUACCU	chr19:58772383-58772637(+)$1	254	77	93	13.1426
CCUCAGAAAGAAGAGC	chr12:32137139-32137460(+)$1	321	149	165	12.2505
GAUGCACUUGCACAUC	chr20:49509185-49509446(-)$1	261	104	120	13.1426
GCUUGACUUUAAAACC	chr1:39801439-39801705(+)$1	266	59	75	12.7937
GAGGAAACCAACCCCA	chr13:23912881-23913175(-)$1	294	261	277	12.3158
UUCUGGAAGAAAGGAA	chr3:44489775-44490057(-)$1	282	112	128	14.7132
CAUGGAGAUUCGCAUG	chr15:77473391-77473730(-)$1	339	244	260	14.7132
GACCUGCUUUGUGGUC	chr13:23913375-23913631(-)$1	256	172	188	14.7132
UUCUGUAAUAAAAGCA	chr17:41246386-41246669(-)$1	283	31	47	12.6310
ACCAAGAAAUUAUGAA	chr1:214819573-214819834(+)$1	261	172	188	12.6650
AUCCAGGGGGCAGGAU	chr3:47951800-47952136(-)$1	336	213	229	13.1154
UUUGAAGAAGCCCAGA	chr2:109380767-109381073(+)$1	306	119	135	14.7132
GUUAGCUUCCAAUGAC	chr1:203766802-203767104(+)$1	302	150	166	14.7132
CCAAAGUGGACAUUGA	chr11:62295121-62295400(-)$1	279	179	195	13.5124
GGGAUUGACUAUUCCU	chr8:94748331-94748603(-)$1	272	36	52	13.1426
GACCUGCUUUGUGGUC	chr13:23913225-23913498(-)$1	273	39	55	14.7132
CACUAAGAAAGCAGUA	chr3:37367504-37367741(+)$1	237	65	81	13.4491
CUUUGAAAAAGAAAAG	chr18:9255706-9256035(+)$1	329	78	94	14.7132
GAAUAUAAGAAAAUUC	chr4:435963-436286(-)$1	323	254	270	14.7132
ACAGAAAUAUAGCUGG	chr2:170664937-170665164(+)$1	227	176	192	13.4500
GAUAAAGGGUGAUGUC	chr11:62286055-62286282(-)$1	227	14	30	14.7132
AAUCCAAACAUUGAUG	chr1:39798462-39798740(+)$1	278	62	78	13.7068
GUCUAAUAAUAGGGGC	chr15:40915353-40915658(+)$1	305	171	187	14.7132
UACAAAGUGCAAUGUG	chr1:91405524-91405769(-)$1	245	94	110	14.7132
GUGUCCAAAUCCAUAG	chr1:39876477-39876782(+)$1	305	48	64	13.6635
ACUUGGAAAGUAAAGU	chr2:55253875-55254195(-)$1	320	204	220	14.7132
UCCUAAAAUGAAAGGA	chr11:62297232-62297514(-)$1	282	11	27	14.7132
GGAGAUUUAGAACUCU	chr1:197071499-197071747(-)$1	248	178	194	14.7132

#DB
((((........))))	chr17:41245151-41245403(-)$1	1	207	223	14.7132
((((........))))	chr3:47952206-47952448(-)$1	1	161	177	14.7132
((((........))))	chr11:62291654-62291905(-)$1	1	36	52	14.7132
((((........))))	chr3:47163771-47164010(-)$1	1	208	224	13.1426
((((........))))	chr11:62297314-62297573(-)$1	1	70	86	14.7132
.(((........))))	chr13:23910509-23910751(-)$1	1	198	214	13.6101
((((........))))	chr2:109088096-109088376(+)$1	1	158	174	14.7132
.(((........)))(	chr18:19154138-19154478(-)$1	1	258	274	12.9127
(.((........))))	chr4:104067020-104067291(-)$1	1	19	35	12.9875
((((........))))	chr2:109380719-109380967(+)$1	1	167	183	14.7132
((((........).))	chr1:214819634-214819916(+)$1	1	127	143	14.0198
((((........))).	chr14:75265750-75266064(+)$1	1	197	213	13.6241
(.((........)).)	chr22:22842699-22842989(-)$1	1	11	27	12.9350
((((........))))	chr1:203768885-203769154(+)$1	1	125	141	14.7132
(.((........))))	chr11:62286358-62286616(-)$1	1	215	231	12.9875
((((........))))	chr13:23914631-23914893(-)$1	1	150	166	13.1154
((((........))))	chr4:13602638-13603005(-)$1	1	229	245	14.7132
((((........))))	chr11:62300314-62300611(-)$1	1	255	271	12.7265
((((........))))	chr18:19154036-19154308(-)$1	1	149	165	14.7132
((((........)).)	chr7:5104865-5105134(+)$1	1	124	140	13.4386
(..(........)..)	chr11:62299689-62299969(-)$1	1	126	142	13.0387
)(((........))).	chr13:23909901-23910175(-)$1	1	223	239	12.7589
((((........))))	chr2:109384010-109384316(+)$1	1	199	215	13.1426
((((........))))	chr3:37366591-37366858(+)$1	1	23	39	14.7132
((((........))))	chr13:23911897-23912235(-)$1	1	186	202	14.7132
(.((........))))	chr19:40540461-40540792(-)$1	1	127	143	12.9875
((((........))))	chr18:9258480-9258777(+)$1	1	24	40	13.1426
(.((........)).)	chr1:39801287-39801526(+)$1	1	211	227	13.3132
((((........))))	chr3:121414284-121414551(-)$1	1	130	146	14.7132
((((........))))	chr18:9257164-9257426(+)$1	1	148	164	13.1426
((((........))))	chr15:40916955-40917214(+)$1	1	2	18	13.1426
((((........))))	chr8:94748278-94748531(-)$1	1	176	192	14.7132
.(((........))).	chr7:91630816-91631093(+)$1	1	113	129	13.6705
(.((........)).)	chr3:37365781-37366015(+)$1	1	29	45	13.3132
.(((........))))	chr11:62287577-62287784(-)$1	1	178	194	12.9931
.(((........))))	chr2:109381586-109381827(+)$1	1	84	100	13.4786
((((........))))	chr4:13603226-13603558(-)$1	1	98	114	14.7132
((((........))))	chr4:13602016-13602281(-)$1	1	15	31	14.7132
((((........))).	chr3:15084401-15084659(-)$1	1	76	92	13.6241
(..(........)..)	chr11:62288283-62288548(-)$1	1	171	187	13.0387
.(((........))).	chr9:99580686-99580952(-)$1	1	109	125	13.5558
(.((........)).)	chr1:46072982-46073241(+)$1	1	155	171	13.3132
.(((........))).	chr13:23908429-23908690(-)$1	1	234	250	12.7708
((((........))))	chr5:112177766-112178081(+)$1	1	162	178	14.7132
)(((........))))	chr12:32138699-32138971(+)$1	1	174	190	13.0655
((((........))))	chr19:58772383-58772637(+)$1	1	77	93	13.1426
)(((........))).	chr12:32137139-32137460(+)$1	1	149	165	12.2505
((((........))))	chr20:49509185-49509446(-)$1	1	104	120	13.1426
(.((........)).)	chr1:39801439-39801705(+)$1	1	59	75	12.7937
(.((........))))	chr13:23912881-23913175(-)$1	1	261	277	12.3158
((((........))))	chr3:44489775-44490057(-)$1	1	112	128	14.7132
((((........))))	chr15:77473391-77473730(-)$1	1	244	260	14.7132
((((........))))	chr13:23913375-23913631(-)$1	1	172	188	14.7132
..((........))..	chr17:41246386-41246669(-)$1	1	31	47	12.6310
..((........))..	chr1:214819573-214819834(+)$1	1	172	188	12.6650
((((........))))	chr3:47951800-47952136(-)$1	1	213	229	13.1154
((((........))))	chr2:109380767-109381073(+)$1	1	119	135	14.7132
((((........))))	chr1:203766802-203767104(+)$1	1	150	166	14.7132
.(((........))).	chr11:62295121-62295400(-)$1	1	179	195	13.5124
((((........))))	chr8:94748331-94748603(-)$1	1	36	52	13.1426
((((........))))	chr13:23913225-23913498(-)$1	1	39	55	14.7132
((((........))).	chr3:37367504-37367741(+)$1	1	65	81	13.4491
((((........))))	chr18:9255706-9256035(+)$1	1	78	94	14.7132
((((........))))	chr4:435963-436286(-)$1	1	254	270	14.7132
.(((........))).	chr2:170664937-170665164(+)$1	1	176	192	13.4500
((((........))))	chr11:62286055-62286282(-)$1	1	14	30	14.7132
.(((........))).	chr1:39798462-39798740(+)$1	1	62	78	13.7068
((((........))))	chr15:40915353-40915658(+)$1	1	171	187	14.7132
((((........))))	chr1:91405524-91405769(-)$1	1	94	110	14.7132
.(((........))).	chr1:39876477-39876782(+)$1	1	48	64	13.6635
((((........))))	chr2:55253875-55254195(-)$1	1	204	220	14.7132
((((........))))	chr11:62297232-62297514(-)$1	1	11	27	14.7132
((((........))))	chr1:197071499-197071747(-)$1	1	178	194	14.7132

#PSSM
d : 0.52	e : 0.16	[ : 0.06	c : 0.04	= : 0.04	g : 0.02	! : 0.02	# : 0.02	" : 0.02	: : 0.01	& : 0.01	F : 0.01	f : 0.01	
d : 0.43	c : 0.23	[ : 0.12	e : 0.10	= : 0.02	! : 0.02	g : 0.01	# : 0.01	" : 0.01	
d : 0.42	c : 0.23	b : 0.16	e : 0.10	= : 0.02	! : 0.02	g : 0.01	
d : 0.41	c : 0.23	b : 0.16	e : 0.10	a : 0.04	= : 0.02	g : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.41	c : 0.23	b : 0.16	e : 0.10	a : 0.04	= : 0.02	g : 0.01	
d : 0.41	c : 0.23	b : 0.16	e : 0.10	= : 0.02	2 : 0.02	] : 0.01	g : 0.01	
d : 0.42	c : 0.23	e : 0.15	] : 0.08	= : 0.02	2 : 0.02	g : 0.01	f : 0.01	4 : 0.01	3 : 0.01	
d : 0.52	e : 0.16	] : 0.05	2 : 0.05	= : 0.02	: : 0.02	3 : 0.02	c : 0.02	f : 0.02	a : 0.01	g : 0.01	5 : 0.01	C : 0.01	4 : 0.01	

#score	1007.3737625182061
#seq	73
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_transcript_m1_run1.txt

#BEAR
========"""aeeeeennnnneeeee]a333========	chr17:79969351-79969576(+)$1	225	174	214	17.8185
ggg!!a[gggggggooooooggggggg]aggggggg]ggg	chr16:2215655-2215907(+)$1	252	46	86	16.1259
"""a[a[iiiiiiiiinnnnniiiiiiiii]a]a22bbhh	chr17:70549563-70549839(-)$1	276	123	163	17.1987
!!==========[bb!!bbccc!!bb!!bb!!========	chr7:158349479-158349827(-)$1	348	55	95	17.2289
======!!iiiiiiiiimmmmiiiiiiiii333=======	chr4:881207-881464(-)$1	257	133	173	23.1351
!============[bb[annnnna]bb============g	chr12:133112777-133113045(+)$1	268	67	107	20.8639
""dddd[===========nnnnn===========]dddd2	chr20:43033159-43033487(+)$1	328	189	229	18.6781
b[ccc[iiiiiiiiinnnnniiiiiiiii]ccc]bb]ccc	chr6:158993978-158994246(+)$1	268	45	85	16.5397
=======[ccc[eeeeennnnneeeee]ccc=========	chr21:44269123-44269354(-)$1	231	189	229	17.3466
=================####iiiiiiiii[bbiiiiiii	chr4:880801-881048(-)$1	247	4	44	21.4400
iiii!!bb!!gggggggmmmmggggggg]bb22iiiiiii	chr3:119217535-119217842(+)$1	307	40	80	16.9628
====!!ccc"""eeeeemmmmeeeee4444ccc]======	chr7:98479339-98479564(+)$1	225	28	68	16.5251
##iiiiiiiii[bb=================####iiiii	chr4:880848-881103(-)$1	255	12	52	20.9756
========iiiiiiiii333eeeee]ccc]==========	chr21:44268968-44269202(-)$1	234	70	110	19.7027
============!!dddd[bb[a[ccc[============	chr1:109642832-109643036(+)$1	204	61	101	19.8313
===================gggggggffffff[bbiiiii	chr7:158133677-158133901(-)$1	224	38	78	18.5713
####bb[ffffff[ccc==================hhhhh	chr7:158135149-158135389(-)$1	240	51	91	16.5946
===========####bbmmmmbb666666===========	chr20:43033617-43033888(+)$1	271	128	168	17.9155
=====[============oooooo============]===	chr17:74273646-74273961(-)$1	315	227	267	24.5591
c[ccc!!==========mmmm==========22cccccc:	chr17:70549338-70549566(-)$1	228	179	219	19.3082
==========ggggggg]bb]iiiiiiiii]iiiiiiiii	chr17:70549366-70549614(-)$1	248	102	142	20.1533
b[===============mmmm===============22bb	chr20:62653095-62653516(+)$1	421	257	297	23.6240
==========ccc]eeeee]bbiiiiiiiii[========	chr21:44269074-44269296(-)$1	222	96	136	19.1299
=================oooooo=================	chr17:53354562-53354851(+)$1	289	50	90	25.5288
===============oooooo===============:eee	chr17:7016949-7017234(-)$1	285	43	83	22.8991
[============[cccmmmmccc]============]gg	chr16:22435025-22435331(-)$1	306	36	76	23.2038
=========[dddd[bbmmmmbb]dddd]===========	chr7:66127618-66127890(+)$1	272	180	220	19.0030
e[bb[============mmmm============]bb]eee	chr17:79964028-79964237(+)$1	209	25	65	21.9236
============!!dddd[bb[a[ccc[============	chr1:109642868-109643074(+)$1	206	25	65	19.8313
===================::iiiiiiiii[=========	chr1:1158372-1158635(-)$1	263	168	208	22.0198
""===============mmmm===============]iii	chr17:79964204-79964467(+)$1	263	18	58	26.1150
========================####ggggggg"""dd	chr7:158158147-158158410(-)$1	263	1	41	19.5834
cc]ccc===================]==============	chr7:158124766-158125010(-)$1	244	103	143	22.4774
[================mmmm================]==	chr19:18881637-18881927(+)$1	290	23	63	25.8991
=================oooooo=================	chr17:53354518-53354762(+)$1	244	94	134	25.5288
[a[eeeee====================ggggggg[gggg	chr7:158125818-158126072(-)$1	254	57	97	18.9037
e[bb[============mmmm============]bb]eee	chr17:79963935-79964193(+)$1	258	118	158	21.9236
####ggggggg[a[annnnna]a]ggggggg=========	chr7:158261333-158261635(-)$1	302	144	184	17.8562
===========####bbmmmmbb666666===========	chr20:43033564-43033817(+)$1	253	181	221	17.9155
============[ddddoooooodddd]============	chr16:89980273-89980503(+)$1	230	146	186	21.2801
""===============mmmm===============]iii	chr17:79964135-79964363(+)$1	228	87	127	26.1150
""===============mmmm===============]iii	chr17:79964163-79964390(+)$1	227	59	99	26.1150
""iiiiiiiiissssssssssiiiiiiiii333=======	chr7:158322524-158322781(-)$1	257	205	245	16.4506
]ccc:============mmmm============eeeee[f	chr16:89555492-89555771(-)$1	279	112	152	19.8080
::==============mmmm==============ccc[cc	chr12:133112989-133113277(+)$1	288	114	154	20.6671
c!!iiiiiiiii!!cccmmmmccciiiiiiiiiccc]ddd	chr11:65211699-65211906(+)$1	207	125	165	18.9067
####=============="""==========$$$$$bb[e	chr7:157612851-157613123(-)$1	272	99	139	19.4304
ff[==============mmmm==============]ffff	chr17:79963810-79964066(+)$1	256	163	203	22.9370
e[==========ccc[annnnna]ccc]==========ee	chr15:60834684-60835032(-)$1	348	252	292	20.3979

#otherMatches

#Seq PSSM
GCCUUGGUGCUGUGGGCACACCGCCCGUCCCAGCUGGGGC	chr17:79969351-79969576(+)$1	225	174	214	17.8185
ggccuggUCGCAUGAUUAAGCGUGUGAGUGCUGCGUGGCG	chr16:2215655-2215907(+)$1	252	46	86	16.1259
guggggggugugcauggggugcgugcacaugugugagcgu	chr17:70549563-70549839(-)$1	276	123	163	17.1987
GACCUGCGCGGGAGCCACCUGCCUGGGAGUGACCUGCGCG	chr7:158349479-158349827(-)$1	348	55	95	17.2289
cauguguacacacgcaugcaagugugugugagccacaugc	chr4:881207-881464(-)$1	257	133	173	23.1351
CCAUGUGUACAUGAUGGUGUGUGAGUGCAUGUGUACAUGA	chr12:133112777-133113045(+)$1	268	67	107	20.8639
gugugcuuauguguggacucuguguucauguguguguacu	chr20:43033159-43033487(+)$1	328	189	229	18.6781
GUCACCCCCAUAGGCCgugugcuugugggugugccagugu	chr6:158993978-158994246(+)$1	268	45	85	16.5397
gccgcgugaucgugcgcugugugugugAGGUGCGCGGUGU	chr21:44269123-44269354(-)$1	231	189	229	17.3466
cgcgugcauguguacacgugagugcgcgugagccgcgugc	chr4:880801-881048(-)$1	247	4	44	21.4400
AGGCCAUGGAGGUGCCGCCACCGGCACCGCGGAGCUUUCU	chr3:119217535-119217842(+)$1	307	40	80	16.9628
guguguuuguguguguguguauaugCUUGUCAGUGCAUGC	chr7:98479339-98479564(+)$1	225	28	68	16.5251
gagugcgcgugagccgcgugcauguguacacgugagugcg	chr4:880848-881103(-)$1	255	12	52	20.9756
GCGGUGUGAUCGUGCGCUGUGUGUGAGGUGCACGCUGCGU	chr21:44268968-44269202(-)$1	234	70	110	19.7027
GAGUGUGAGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUU	chr1:109642832-109643036(+)$1	204	61	101	19.8313
GUGACGUCUGCGGGCGUCAGCUCUUAUGGUGAGACUGUGG	chr7:158133677-158133901(-)$1	224	38	78	18.5713
ugaguugacugugugagugaugucuguagaugucagcucu	chr7:158135149-158135389(-)$1	240	51	91	16.5946
agcgugugugcgugugugugGACUGUGUGGCACACACGCU	chr20:43033617-43033888(+)$1	271	128	168	17.9155
augaguauguauguauauguucguguguaugugcaucuuc	chr17:74273646-74273961(-)$1	315	227	267	24.5591
ACGCGUCUGGGGGCGGGACUUUCUGUCUUUAUCUGCUGGU	chr17:70549338-70549566(-)$1	228	179	219	19.3082
guguguacaugugcacaugugugcgugcauguauccacau	chr17:70549366-70549614(-)$1	248	102	142	20.1533
gugugugugugugugugCAUGCACGUAUGCAUAUGCCUCA	chr20:62653095-62653516(+)$1	421	257	297	23.6240
gcguggugugaucgugcgcuguguguguggugcacgccgc	chr21:44269074-44269296(-)$1	222	96	136	19.1299
ugugugugugugugugugugugugcgcgcgcauguguacg	chr17:53354562-53354851(+)$1	289	50	90	25.5288
CCUCGUAUGUGCGUGUGCACGUAUGUGCAUAUGAGGAAUG	chr17:7016949-7017234(-)$1	285	43	83	22.8991
ugcacauaugcacuguguauacauugugcauguguguuca	chr16:22435025-22435331(-)$1	306	36	76	23.2038
ggugugcgugugcaggcauguguguguaggugugcaucug	chr7:66127618-66127890(+)$1	272	180	220	19.0030
gggugugugugugugcguccuugcaugugcacaggugugu	chr17:79964028-79964237(+)$1	209	25	65	21.9236
GAGUGUGAGUGGACGCGUGAGUGUGUGAGUGUGCGCGCUU	chr1:109642868-109643074(+)$1	206	25	65	19.8313
ugcgcgugcucgugaguacgugugugcauguuguguguac	chr1:1158372-1158635(-)$1	263	168	208	22.0198
guguguguguauaugcaugucugugugugcacauaugugc	chr17:79964204-79964467(+)$1	263	18	58	26.1150
gugugugcgugugcaugugugCAUUGGGCUGCGGCUUCUC	chr7:158158147-158158410(-)$1	263	1	41	19.5834
UGUGAGUGAUGUCUGCAGGUGUCACAUCUUAUGGUGAGAG	chr7:158124766-158125010(-)$1	244	103	143	22.4774
ggugugggugugcaugcguggguguguacauuugugugca	chr19:18881637-18881927(+)$1	290	23	63	25.8991
ugugugugugugugugugugugugcgcgcgcauguguacg	chr17:53354518-53354762(+)$1	244	94	134	25.5288
GGGUGUGAGUGACGUCUGCAGAUGUCACCUCUUAUGGUGA	chr7:158125818-158126072(-)$1	254	57	97	18.9037
gggugugugugugugcguccuugcaugugcacaggugugu	chr17:79963935-79964193(+)$1	258	118	158	21.9236
GUUGCUCCACCGGGAGUGUGUGUGGGUGGGGGGUGUGCAU	chr7:158261333-158261635(-)$1	302	144	184	17.8562
agcgugugugcgugugugugGACUGUGUGGCACACACGCU	chr20:43033564-43033817(+)$1	253	181	221	17.9155
ugugcgcauacguguguggguaaacauuuguaugugcacg	chr16:89980273-89980503(+)$1	230	146	186	21.2801
guguguguguauaugcaugucugugugugcacauaugugc	chr17:79964135-79964363(+)$1	228	87	127	26.1150
guguguguguauaugcaugucugugugugcacauaugugc	chr17:79964163-79964390(+)$1	227	59	99	26.1150
ugugcauaugugugguguguggcaugugugauguacacgu	chr7:158322524-158322781(-)$1	257	205	245	16.4506
ugugugcgcgcgcgcgcgcgcgcgcgugugugugugugug	chr16:89555492-89555771(-)$1	279	112	152	19.8080
ugcauguguacauggugugugcuauguguacaugacagug	chr12:133112989-133113277(+)$1	288	114	154	20.6671
UGAUUCUGCUCAGAUUCAUCAGGAUGAGUAGAAGGCAccc	chr11:65211699-65211906(+)$1	207	125	165	18.9067
guguugugugugugaacgugugugggucugcuguguguga	chr7:157612851-157613123(-)$1	272	99	139	19.4304
ggggcguguguguguccuugcggguacacaugcgugcuug	chr17:79963810-79964066(+)$1	256	163	203	22.9370
gugcaugcgugccgugugugugaggugugcaugugugCCA	chr15:60834684-60835032(-)$1	348	252	292	20.3979

#DB
((((((((...((((((.....))))).)...))))))))	chr17:79969351-79969576(+)$1	1	174	214	17.8185
(((..(.(((((((......))))))).)))))))).)))	chr16:2215655-2215907(+)$1	1	46	86	16.1259
...(.(.(((((((((.....))))))))).).)..))((	chr17:70549563-70549839(-)$1	1	123	163	17.1987
..((((((((((.((..(((((..((..((..((((((((	chr7:158349479-158349827(-)$1	1	55	95	17.2289
((((((..(((((((((....)))))))))...)))))))	chr4:881207-881464(-)$1	1	133	173	23.1351
.((((((((((((.((.(.....).)))))))))))))))	chr12:133112777-133113045(+)$1	1	67	107	20.8639
..((((.(((((((((((.....))))))))))).)))).	chr20:43033159-43033487(+)$1	1	189	229	18.6781
(.(((.(((((((((.....))))))))).))).)).)))	chr6:158993978-158994246(+)$1	1	45	85	16.5397
(((((((.(((.(((((.....))))).))))))))))))	chr21:44269123-44269354(-)$1	1	189	229	17.3466
(((((((((((((((((....(((((((((.(((((((((	chr4:880801-881048(-)$1	1	4	44	21.4400
((((..((..(((((((....))))))).))..)))))))	chr3:119217535-119217842(+)$1	1	40	80	16.9628
((((..(((...(((((....)))))....))).))))))	chr7:98479339-98479564(+)$1	1	28	68	16.5251
..(((((((((.(((((((((((((((((((....(((((	chr4:880848-881103(-)$1	1	12	52	20.9756
)))))))))))))))))...))))).))).))))))))))	chr21:44268968-44269202(-)$1	1	70	110	19.7027
((((((((((((..((((.((.(.(((.((((((((((((	chr1:109642832-109643036(+)$1	1	61	101	19.8313
((((((((((((((((((((((((((((((((.(((((((	chr7:158133677-158133901(-)$1	1	38	78	18.5713
....((.((((((.((((((((((((((((((((((((((	chr7:158135149-158135389(-)$1	1	51	91	16.5946
(((((((((((....((....))......)))))))))))	chr20:43033617-43033888(+)$1	1	128	168	17.9155
(((((.((((((((((((......)))))))))))).)))	chr17:74273646-74273961(-)$1	1	227	267	24.5591
(.(((..((((((((((....))))))))))..)))))).	chr17:70549338-70549566(-)$1	1	179	219	19.3082
))))))))))))))))).)).))))))))).)))))))))	chr17:70549366-70549614(-)$1	1	102	142	20.1533
(.(((((((((((((((....)))))))))))))))..))	chr20:62653095-62653516(+)$1	1	257	297	23.6240
))))))))))))).))))).))(((((((((.((((((((	chr21:44269074-44269296(-)$1	1	96	136	19.1299
(((((((((((((((((......)))))))))))))))))	chr17:53354562-53354851(+)$1	1	50	90	25.5288
(((((((((((((((......))))))))))))))).(((	chr17:7016949-7017234(-)$1	1	43	83	22.8991
.((((((((((((.(((....))).)))))))))))).))	chr16:22435025-22435331(-)$1	1	36	76	23.2038
(((((((((.((((.((....)).)))).)))))))))))	chr7:66127618-66127890(+)$1	1	180	220	19.0030
(.((.((((((((((((....)))))))))))).)).)))	chr17:79964028-79964237(+)$1	1	25	65	21.9236
((((((((((((..((((.((.(.(((.((((((((((((	chr1:109642868-109643074(+)$1	1	25	65	19.8313
)))))))))))))))))))..(((((((((.(((((((((	chr1:1158372-1158635(-)$1	1	168	208	22.0198
..(((((((((((((((....))))))))))))))).)))	chr17:79964204-79964467(+)$1	1	18	58	26.1150
((((((((((((((((((((((((....(((((((...((	chr7:158158147-158158410(-)$1	1	1	41	19.5834
)).)))))))))))))))))))))).))))))))))))))	chr7:158124766-158125010(-)$1	1	103	143	22.4774
.((((((((((((((((....)))))))))))))))).))	chr19:18881637-18881927(+)$1	1	23	63	25.8991
(((((((((((((((((......)))))))))))))))))	chr17:53354518-53354762(+)$1	1	94	134	25.5288
.(.((((((((((((((((((((((((((((((((.((((	chr7:158125818-158126072(-)$1	1	57	97	18.9037
(.((.((((((((((((....)))))))))))).)).)))	chr17:79963935-79964193(+)$1	1	118	158	21.9236
....(((((((.(.(.....).).))))))))))))))))	chr7:158261333-158261635(-)$1	1	144	184	17.8562
(((((((((((....((....))......)))))))))))	chr20:43033564-43033817(+)$1	1	181	221	17.9155
((((((((((((.((((......)))).))))))))))))	chr16:89980273-89980503(+)$1	1	146	186	21.2801
..(((((((((((((((....))))))))))))))).)))	chr17:79964135-79964363(+)$1	1	87	127	26.1150
..(((((((((((((((....))))))))))))))).)))	chr17:79964163-79964390(+)$1	1	59	99	26.1150
..(((((((((..........)))))))))...)))))))	chr7:158322524-158322781(-)$1	1	205	245	16.4506
.))).((((((((((((....))))))))))))(((((.(	chr16:89555492-89555771(-)$1	1	112	152	19.8080
..((((((((((((((....))))))))))))))(((.((	chr12:133112989-133113277(+)$1	1	114	154	20.6671
(..(((((((((..(((....))))))))))))))).)))	chr11:65211699-65211906(+)$1	1	125	165	18.9067
....((((((((((((((...((((((((((.....((.(	chr7:157612851-157613123(-)$1	1	99	139	19.4304
((.((((((((((((((....)))))))))))))).))))	chr17:79963810-79964066(+)$1	1	163	203	22.9370
(.(((((((((((((.(.....).))).))))))))))))	chr15:60834684-60835032(-)$1	1	252	292	20.3979

#PSSM
= : 0.42	" : 0.12	# : 0.08	c : 0.06	[ : 0.06	e : 0.06	! : 0.04	b : 0.04	g : 0.02	i : 0.02	] : 0.02	: : 0.02	f : 0.02	
= : 0.48	" : 0.12	[ : 0.12	# : 0.08	! : 0.04	c : 0.04	g : 0.02	i : 0.02	a : 0.02	: : 0.02	f : 0.02	
= : 0.63	c : 0.06	i : 0.06	# : 0.06	b : 0.04	[ : 0.04	g : 0.02	" : 0.02	d : 0.02	] : 0.02	! : 0.02	
= : 0.65	c : 0.08	i : 0.08	# : 0.06	b : 0.04	! : 0.02	a : 0.02	d : 0.02	e : 0.02	
= : 0.65	! : 0.06	[ : 0.06	c : 0.06	i : 0.06	d : 0.02	b : 0.02	e : 0.02	g : 0.02	: : 0.02	
= : 0.69	! : 0.06	i : 0.06	a : 0.04	[ : 0.04	d : 0.02	b : 0.02	c : 0.02	e : 0.02	g : 0.02	
= : 0.71	[ : 0.08	i : 0.08	! : 0.04	b : 0.02	c : 0.02	e : 0.02	g : 0.02	
= : 0.73	i : 0.10	g : 0.04	! : 0.02	[ : 0.02	b : 0.02	c : 0.02	f : 0.02	e : 0.02	
= : 0.71	i : 0.14	g : 0.04	c : 0.04	" : 0.02	! : 0.02	f : 0.02	
= : 0.69	i : 0.14	" : 0.04	g : 0.04	c : 0.02	! : 0.02	f : 0.02	[ : 0.02	
= : 0.65	i : 0.14	g : 0.08	" : 0.04	c : 0.04	f : 0.02	d : 0.02	
= : 0.61	i : 0.10	g : 0.06	[ : 0.06	# : 0.04	a : 0.02	" : 0.02	f : 0.02	c : 0.02	d : 0.02	s : 0.02	
= : 0.51	i : 0.08	e : 0.06	g : 0.06	! : 0.06	[ : 0.04	# : 0.04	c : 0.04	b : 0.02	f : 0.02	d : 0.02	a : 0.02	s : 0.02	
= : 0.46	i : 0.08	[ : 0.08	e : 0.06	g : 0.06	! : 0.06	b : 0.04	# : 0.04	d : 0.04	] : 0.02	s : 0.02	c : 0.02	
= : 0.48	e : 0.08	i : 0.08	c : 0.08	d : 0.06	b : 0.04	g : 0.04	# : 0.04	o : 0.02	[ : 0.02	a : 0.02	s : 0.02	
= : 0.46	e : 0.08	b : 0.08	i : 0.06	d : 0.06	c : 0.06	o : 0.04	n : 0.04	g : 0.04	! : 0.02	s : 0.02	[ : 0.02	
= : 0.44	e : 0.08	n : 0.06	d : 0.06	c : 0.06	b : 0.06	o : 0.04	i : 0.04	g : 0.04	! : 0.02	[ : 0.02	s : 0.02	m : 0.02	a : 0.02	
m : 0.38	= : 0.20	n : 0.12	o : 0.10	d : 0.04	b : 0.02	a : 0.02	# : 0.02	3 : 0.02	] : 0.02	e : 0.02	s : 0.02	
m : 0.38	n : 0.16	= : 0.14	o : 0.12	b : 0.04	[ : 0.04	# : 0.02	3 : 0.02	e : 0.02	s : 0.02	" : 0.02	
m : 0.38	n : 0.16	o : 0.12	= : 0.10	b : 0.06	c : 0.02	# : 0.02	3 : 0.02	g : 0.02	] : 0.02	: : 0.02	s : 0.02	" : 0.02	
m : 0.36	n : 0.12	= : 0.12	o : 0.10	b : 0.06	g : 0.04	c : 0.02	i : 0.02	# : 0.02	e : 0.02	] : 0.02	: : 0.02	a : 0.02	s : 0.02	" : 0.02	
= : 0.36	i : 0.14	n : 0.10	b : 0.08	o : 0.08	g : 0.06	c : 0.06	e : 0.04	[ : 0.04	] : 0.02	
= : 0.36	i : 0.16	e : 0.08	a : 0.08	o : 0.08	g : 0.06	b : 0.06	n : 0.04	c : 0.04	! : 0.02	
= : 0.42	i : 0.16	e : 0.08	g : 0.06	] : 0.06	[ : 0.04	6 : 0.04	c : 0.04	! : 0.02	a : 0.02	o : 0.02	d : 0.02	
= : 0.42	i : 0.18	e : 0.08	g : 0.08	c : 0.06	] : 0.04	6 : 0.04	d : 0.04	b : 0.02	# : 0.02	
= : 0.42	i : 0.18	g : 0.08	e : 0.06	c : 0.06	b : 0.04	] : 0.04	6 : 0.04	d : 0.04	# : 0.02	
= : 0.44	i : 0.18	c : 0.08	g : 0.06	e : 0.04	6 : 0.04	d : 0.04	! : 0.02	b : 0.02	4 : 0.02	f : 0.02	# : 0.02	
= : 0.46	i : 0.18	] : 0.10	g : 0.04	[ : 0.04	6 : 0.04	! : 0.02	4 : 0.02	c : 0.02	f : 0.02	d : 0.02	# : 0.02	
= : 0.53	i : 0.18	g : 0.06	a : 0.04	c : 0.04	] : 0.04	6 : 0.04	b : 0.02	4 : 0.02	f : 0.02	
= : 0.59	i : 0.16	g : 0.08	b : 0.04	] : 0.04	3 : 0.02	c : 0.02	4 : 0.02	f : 0.02	
= : 0.61	g : 0.08	3 : 0.06	c : 0.06	] : 0.04	[ : 0.04	i : 0.04	! : 0.02	b : 0.02	f : 0.02	
= : 0.61	3 : 0.06	g : 0.06	c : 0.04	2 : 0.04	i : 0.04	a : 0.02	! : 0.02	b : 0.02	# : 0.02	f : 0.02	[ : 0.02	$ : 0.02	
= : 0.67	g : 0.06	3 : 0.04	c : 0.04	2 : 0.04	i : 0.04	] : 0.02	b : 0.02	# : 0.02	[ : 0.02	$ : 0.02	
= : 0.65	] : 0.08	g : 0.06	i : 0.06	c : 0.04	a : 0.02	# : 0.02	b : 0.02	e : 0.02	$ : 0.02	
= : 0.63	b : 0.08	g : 0.06	i : 0.06	c : 0.06	2 : 0.02	] : 0.02	# : 0.02	e : 0.02	$ : 0.02	
= : 0.59	i : 0.10	b : 0.06	c : 0.06	g : 0.02	2 : 0.02	d : 0.02	h : 0.02	" : 0.02	[ : 0.02	e : 0.02	$ : 0.02	] : 0.02	
= : 0.46	] : 0.18	i : 0.10	b : 0.04	c : 0.04	d : 0.02	h : 0.02	2 : 0.02	: : 0.02	" : 0.02	g : 0.02	e : 0.02	f : 0.02	
= : 0.44	i : 0.16	e : 0.08	g : 0.04	b : 0.04	d : 0.04	c : 0.04	] : 0.04	h : 0.02	2 : 0.02	" : 0.02	[ : 0.02	f : 0.02	
= : 0.44	i : 0.16	e : 0.08	g : 0.06	d : 0.06	c : 0.06	h : 0.04	[ : 0.04	b : 0.02	f : 0.02	
= : 0.42	i : 0.16	e : 0.10	g : 0.08	h : 0.04	c : 0.04	d : 0.04	f : 0.04	2 : 0.02	: : 0.02	b : 0.02	

#score	1002.9510553484183
#seq	49
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_UTR_m1_run2.txt

#BEAR
[a!!abb[ccc!!bboooooobb22cccbb]a22a]ggg	chr6:32940773-32941013(+)$1	240	165	204	13.8366
c"""ccc[ccc[bboooooobb]ccc]ccc]ccc22ggg	chr17:30678485-30678729(+)$1	244	55	94	13.5555
cc[ffffff"""ddddoooooodddd333ffffff]ccc	chr6:168363818-168364141(+)$1	323	55	94	15.0597
ccc"""dddd"""cccooooooccc]dddd333cccfff	chr1:247094924-247095211(-)$1	287	220	259	17.9881
cc!!ccc[bb####cccnnnnnccc4444bb]ccccccg	chr19:54970374-54970598(+)$1	224	89	128	14.7520
====!!a!!a"""ddddoooooodddda22a22======	chr19:17439824-17440077(-)$1	253	17	56	17.0397
c"""ggggggg!!ddddmmmmdddd]ggggggg22ccc]	chr9:19379856-19380173(-)$1	317	69	108	13.7522
fff!!===========oooooo===========]fffff	chr21:30672262-30672558(+)$1	296	103	142	17.3840
ee"""ccc[ccccccooooooccc333cccccc4444ee	chr17:20905342-20905646(-)$1	304	200	239	15.8996
""dddd"""gggggggooooooggggggg]dddd]bb]d	chr17:17124405-17124650(-)$1	245	9	48	14.5245
####eeeee[bb[cccoooooocccbb]eeeeedddddd	chr22:21212832-21213156(-)$1	324	121	160	14.8496
&&eeeee!!accc[cccoooooocccccc]a22eeeee8	chr18:8609607-8609929(+)$1	322	261	300	13.6096
=====####ccc[cccooooooccc]ccc4444======	chr3:47516889-47517139(-)$1	250	167	206	18.9104
===[bb[a[bb[a[cccoooooocccabba]bb]=====	chr1:182360288-182360507(-)$1	219	45	84	15.1165
eee!!bbccc!!ddddnnnnndddd]ccc]bb333eeee	chr12:123351065-123351305(-)$1	240	161	200	12.7341
=====####gggggggrrrrrrrrrggggggg22=====	chr12:121124959-121125217(+)$1	258	80	119	13.0276
ccc"""dddd"""cccooooooccc]dddd333cccfff	chr1:247094827-247095124(-)$1	297	133	172	17.9881
c[a[ggggggg[ddddlllddddggggggg]a]ccceee	chr7:129710288-129710649(+)$1	361	97	136	12.5429
g"""dddd####ccccccmmmmccc]ccc333ddddggg	chr7:157132577-157132848(+)$1	271	195	234	13.7237
cc!!ccc[bb####cccnnnnnccc4444bb]ccccccg	chr19:54970398-54970664(+)$1	266	65	104	14.7520
ggggggg!!ccc[bboooooobbccc]ggggggg]bb22	chr2:242255243-242255535(+)$1	292	89	128	14.2061
cc!!ccc[bb####cccnnnnnccc4444bb]ccccccg	chr19:54970334-54970569(+)$1	235	129	168	14.7520
gggg[a[eeeee[cccooooooccc]eeeee]a]ggggg	chr9:137024366-137024629(+)$1	263	13	52	16.9614
fffffffffccc[cccooooooccc]ccc]ffffff]ff	chr8:145149889-145150126(+)$1	237	175	214	15.5567
ffff!!ffffff[cccoooooocccffffff333fffff	chr22:22336781-22337052(-)$1	271	209	248	16.1294
ggg"""eeeee[ddddnnnnndddd]eeeeeggggggg]	chr22:20068065-20068288(+)$1	223	21	60	13.3451
dda[ggggggg[ddddooooooddddggggggg]a]ddd	chr15:91505731-91505995(+)$1	264	6	45	15.4505
c!!eeeee[bbffffffooooooffffff4444bb]eee	chr1:182360457-182360748(-)$1	291	227	266	13.1543
f"""ccc[bb"""eeeeellleeeee333bb]ccc4444	chr3:196304350-196304621(+)$1	271	60	99	12.8526
####dddd[eeeee[aooooooa]eeeeeddddffffff	chr5:138630573-138630830(+)$1	257	27	66	14.2095
a[ccc[aeeeee[ddddnnnnndddd]eeeee]a]ccc]	chr6:170151701-170152074(+)$1	373	117	156	12.8134
ff[dddd[ccc[ddddooooooddddccc]ddddfffff	chr19:54970319-54970534(+)$1	215	85	124	14.9483
c[ccc[a!!gggggggnnnnnggggggg22a333ccc]c	chrX:152936704-152937006(-)$1	302	48	87	14.0672
="""dddd[ccc[ddddmmmmdddd]ccc333dddd===	chr20:42295702-42296047(+)$1	345	130	169	13.5722
agggggggdddd[cccoooooocccdddd]ggggggg]a	chr1:62902812-62903072(+)$1	260	3	42	15.7695
ddd"""==========oooooo==========]dddd]e	chr21:30671736-30671992(+)$1	256	213	252	16.9168
fff"""ffffff[cccoooooocccffffff4444ffff	chr1:114517527-114517824(+)$1	297	147	186	16.3799
gggggg!!ccc[eeeeennnnneeeee]cccggggggg]	chr4:39979247-39979498(-)$1	251	79	118	12.6353
======="""fffffflllffffff]==========]a]	chr1:20234886-20235135(+)$1	249	42	81	12.2294
[eeeee"""bb!!cccooooooccc22bb]eeeee]a22	chr22:21801286-21801544(+)$1	258	195	234	15.5160
ee####==========oooooo==========eeeee]f	chr2:74691996-74692401(-)$1	405	138	177	17.2382
c"""dddd[eeeee[bboooooobb]eeeee22dddd33	chr19:10766106-10766356(+)$1	250	119	158	14.0936
d"""eeeee[bbddddoooooodddd]bb]eeeee333d	chr19:18547932-18548224(-)$1	292	12	51	14.7949
iiiii[dddd!!acccooooooccc]a22ddddiiiiii	chr7:923731-923943(+)$1	212	163	202	16.2193
gg[eeeee[bb[eeeeeooooooeeeee]bb22eeeee]	chr19:8551041-8551271(+)$1	230	76	115	13.5748
cc[a[a[a[a"""ddddnnnnndddd4444a]a]a]acc	chr14:70234468-70234783(+)$1	315	98	137	14.6494
iiiiiiii[bb!!cccooooooccc]bbiiiiiiiii33	chr17:79879200-79879436(-)$1	236	96	135	17.7942
f[bb[ggggggg[ddddllldddd]ggggggg333bbff	chr19:54970695-54970939(+)$1	244	185	224	12.3941
::ccc!!eeeee[cccooooooccc]eeeee333ccc::	chr2:74685302-74685603(+)$1	301	169	208	13.4484
:bb[cccggggggg[aooooooaggggggg4444ccc]b	chr1:225615213-225615446(-)$1	233	176	215	15.0286
gg!!ccc!!ccc[bb[aooooooa]bb]ccc22cccggg	chr16:89337988-89338244(-)$1	256	117	156	15.8256
e"""ddddiiiiiiiiiooooooiiiiiiiii]dddd22	chr13:27825765-27826078(+)$1	313	202	241	15.4050
c[ccc[eeeee!!cccooooooccc22eeeee]ccc]cc	chr17:29632114-29632405(+)$1	291	142	181	16.6974
"ffffffccc[bbcccooooooccc22bb]ccc]fffff	chr12:104682370-104682650(+)$1	280	44	83	14.5599

#otherMatches

#Seq PSSM
GGCCCAGUCUUAACCGAGUCAGGCAGAGCUAGUUUGACG	chr6:32940773-32941013(+)$1	240	165	204	13.8366
AACACAGGAAUUUGACAAAGUAUAUUGCUGAUUAUUGAG	chr17:30678485-30678729(+)$1	244	55	94	13.5555
AAUGGGGAUUUUGAGAUGUUUCUCUCCAUAUCUCCCUUU	chr6:168363818-168364141(+)$1	323	55	94	15.0597
CGGCCACGUCUCCCGGGAGAUGCUGUGACGGACCCGCAC	chr1:247094924-247095211(-)$1	287	220	259	17.9881
CCAAGGUGGAGAAAUUCUGGUCGAAGAGGUUGACCGGUA	chr19:54970374-54970598(+)$1	224	89	128	14.7520
GUGCACCGACAGAGCCCGCGGUGGGGUGGAGACGCGCUG	chr19:17439824-17440077(-)$1	253	17	56	17.0397
UCCAGGAUCCUGGCUUUAGGUGGAGAAGGGUCUCAAGUA	chr9:19379856-19380173(-)$1	317	69	108	13.7522
AGAAAUGGGAAGAGGUCGGCUUGCUUCUUCCUGGUCUUU	chr21:30672262-30672558(+)$1	296	103	142	17.3840
UGUGUCUGUCAUCUCAGUCUGGAGUAAAUGCAGUGUCUG	chr17:20905342-20905646(-)$1	304	200	239	15.8996
AAGAAUCUGUUCCCCAGCUAGGUGGGGAAAAUUCACAGG	chr17:17124405-17124650(-)$1	245	9	48	14.5245
CAGCGCCGCGGCUCGUGAggugauggcggcggccccggc	chr22:21212832-21213156(-)$1	324	121	160	14.8496
CGGCUCCCGCGGCGUGGGCAAGACCAGCCUGAUGGAGCG	chr18:8609607-8609929(+)$1	322	261	300	13.6096
AAGCUGUUGUAGAACCUGCUUUGGUGCUGUUUGGGUUUU	chr3:47516889-47517139(-)$1	250	167	206	18.9104
GCUGUGGAUGGAGUGGCGGUGCGGUCCCCUGUGGAGCGC	chr1:182360288-182360507(-)$1	219	45	84	15.1165
GAGGUCACCAUAGUCACCGCCUGACCUGGCUGCUGCUCU	chr12:123351065-123351305(-)$1	240	161	200	12.7341
GGCCUGGCAGCCGGCCGAGGACGAGGGUCGGCGGGGGCU	chr12:121124959-121125217(+)$1	258	80	119	13.0276
CGGCCACGUCUCCCGGGAGAUGCUGUGACGGACCCGCAC	chr1:247094827-247095124(-)$1	297	133	172	17.9881
UGUCUCCUGGGUCUCUGGAGGAGCCCAGGAAGGAGGCUC	chr7:129710288-129710649(+)$1	361	97	136	12.5429
UGCUUACAGAUAUCUGUUGAGGAAUAAGAGAAUGUAAUU	chr7:157132577-157132848(+)$1	271	195	234	13.7237
CCAAGGUGGAGAAAUUCUGGUCGAAGAGGUUGACCGGUA	chr19:54970398-54970664(+)$1	266	65	104	14.7520
GACCGCGAGCGCUGGGCGGGUCCGCGGCGCGGUCGGUCG	chr2:242255243-242255535(+)$1	292	89	128	14.2061
CCAAGGUGGAGAAAUUCUGGUCGAAGAGGUUGACCGGUA	chr19:54970334-54970569(+)$1	235	129	168	14.7520
CGGAGCAGGGUGGCUGAGGGCACAGGUGCCUGGGUCUGU	chr9:137024366-137024629(+)$1	263	13	52	16.9614
gggcgcgcgugcccggggUCUGCUGUGCAGCGCGCGUCC	chr8:145149889-145150126(+)$1	237	175	214	15.5567
uuuagggugagaucugcuguaccagucucacagguaggg	chr22:22336781-22337052(-)$1	271	209	248	16.1294
CCUccggggcuggggggcgggccccgggcccAGGCGUUG	chr22:20068065-20068288(+)$1	223	21	60	13.3451
UGGGGUCUACUGUGGCUAAAAUGUCAGGUAGAUGCACAC	chr15:91505731-91505995(+)$1	264	6	45	15.4505
GCCGCCCCUGGAGGCCGUUGGGCCGGCCUGCGCCCUGGG	chr1:182360457-182360748(-)$1	291	227	266	13.1543
CCCAUUGCUCAGAGCACUGAUGGUGCAAGGACCAAGAUU	chr3:196304350-196304621(+)$1	271	60	99	12.8526
GAUAUUUCUAGAACGGUUAUGGUGGUUCUGAAAUGGCUA	chr5:138630573-138630830(+)$1	257	27	66	14.2095
GGGUGGUGCUCGGCUACGCGGAGUGGGCGAGCGAGCACG	chr6:170151701-170152074(+)$1	373	117	156	12.8134
ugaguggaggccagggaugcugcCCUGCCACUGCCAUUG	chr19:54970319-54970534(+)$1	215	85	124	14.9483
GGGACCCUAGACAGCCGGGAAGGCUGUUGUGCCCGUUGC	chrX:152936704-152937006(-)$1	302	48	87	14.0672
gccggagcagcccggguccugaccccggcccggcucccg	chr20:42295702-42296047(+)$1	345	130	169	13.5722
CUCCCGGGGCGGGCGCAGAUGGGCGCCGCUCCCGGGAUG	chr1:62902812-62903072(+)$1	260	3	42	15.7695
AGCUUUGUGCUCGUGUAAUGUAACACGAGUGCCGUUGCU	chr21:30671736-30671992(+)$1	256	213	252	16.9168
GAAUUGUUUUGCACAGGUGUGUCUGGUGAGGAGUUUUUC	chr1:114517527-114517824(+)$1	297	147	186	16.3799
CGGUCCGGGCCGGCGCGAGGUGCGUGCGGGCGGGCCGCG	chr4:39979247-39979498(-)$1	251	79	118	12.6353
GUUAAUUAGGCCUGGCCUUGUUGGGAAGUUGAUAGUGGU	chr1:20234886-20235135(+)$1	249	42	81	12.2294
CAGGGAACAGGUGCUGGGGGUGCAGAUCCCUCCCUCCUU	chr22:21801286-21801544(+)$1	258	195	234	15.5160
cgUAGCACGGCUGGAGGAGUGGCUCUGGCCGUCGUGGUC	chr2:74691996-74692401(-)$1	405	138	177	17.2382
AGCGUCGGUUUCAGUGGUUUCUUUUUCUGGACUCCGGUA	chr19:10766106-10766356(+)$1	250	119	158	14.0936
CGAAGCUCUGUGGGGCGGGAGGGCUUGCAGGGGGCGGGG	chr19:18547932-18548224(-)$1	292	12	51	14.7949
GAGCUUGUUUUUCCAGAGUGCCCUGUGCCAGACGGCUCC	chr7:923731-923943(+)$1	212	163	202	16.2193
UGGCAUUGAGCGCAUGGGCCUGGCCAUGGGUGGCGGUGG	chr19:8551041-8551271(+)$1	230	76	115	13.5748
AGAUGGGAGGGGGCCGGAGAGCCCGGAGAGUGUGCGGCU	chr14:70234468-70234783(+)$1	315	98	137	14.6494
CUUGCCGGUGCCGUGGUGUCGUCCGUGCCUGGUGAGGUU	chr17:79879200-79879436(-)$1	236	96	135	17.7942
UUGGAGACUCAUUCUGGAAUCUAGUGUGGGUCAAGCCAA	chr19:54970695-54970939(+)$1	244	185	224	12.3941
GUGGAUUGGUCACAGGGAGAAACCUCUGAUCUGUUCCUA	chr2:74685302-74685603(+)$1	301	169	208	13.4484
CGAGCGCCCGUCUGACAGAUGAGCAGGCGGCCCCGCGGU	chr1:225615213-225615446(-)$1	233	176	215	15.0286
cuagggucucguuucacucuucugcgaugcguagccagu	chr16:89337988-89338244(-)$1	256	117	156	15.8256
ACGAGACUGAGUCGCUUGGGGUGAGGCGACUCGAGUUAA	chr13:27825765-27826078(+)$1	313	202	241	15.4050
GAGGUGAACACGGCUUGCUGGGAGGAGGUGUUGGCUAUU	chr17:29632114-29632405(+)$1	291	142	181	16.6974
AUUUUAGCGGAGUAGUGCAAUGAUUUAACCCUGACUAGA	chr12:104682370-104682650(+)$1	280	44	83	14.5599

#DB
.(..(((.(((..((......))..))))).)..).)))	chr6:32940773-32941013(+)$1	1	165	204	13.8366
(...(((.(((.((......)).))).))).)))..)))	chr17:30678485-30678729(+)$1	1	55	94	13.5555
((.((((((...((((......))))...)))))).)))	chr6:168363818-168364141(+)$1	1	55	94	15.0597
(((...((((...(((......))).))))...))))))	chr1:247094924-247095211(-)$1	1	220	259	17.9881
((..(((.((....(((.....)))....)).)))))))	chr19:54970374-54970598(+)$1	1	89	128	14.7520
((((..(..(...((((......)))))..)..))))))	chr19:17439824-17440077(-)$1	1	17	56	17.0397
(...(((((((..((((....)))).)))))))..))).	chr9:19379856-19380173(-)$1	1	69	108	13.7522
(((..(((((((((((......))))))))))).)))))	chr21:30672262-30672558(+)$1	1	103	142	17.3840
((...(((.((((((......)))...))))))....))	chr17:20905342-20905646(-)$1	1	200	239	15.8996
..((((...(((((((......))))))).)))).)).)	chr17:17124405-17124650(-)$1	1	9	48	14.5245
....(((((.((.(((......))))).)))))))))((	chr22:21212832-21213156(-)$1	1	121	160	14.8496
..(((((..((((.(((......)))))).)..))))).	chr18:8609607-8609929(+)$1	1	261	300	13.6096
(((((....(((.(((......))).)))....))))))	chr3:47516889-47517139(-)$1	1	167	206	18.9104
(((.((.(.((.(.(((......))))))).)).)))))	chr1:182360288-182360507(-)$1	1	45	84	15.1165
(((..(((((..((((.....)))).))).))...))))	chr12:123351065-123351305(-)$1	1	161	200	12.7341
(((((....(((((((.........)))))))..)))))	chr12:121124959-121125217(+)$1	1	80	119	13.0276
(((...((((...(((......))).))))...))))))	chr1:247094827-247095124(-)$1	1	133	172	17.9881
(.(.(((((((.((((...))))))))))).).)))(((	chr7:129710288-129710649(+)$1	1	97	136	12.5429
(...((((....((((((....))).)))...)))))))	chr7:157132577-157132848(+)$1	1	195	234	13.7237
((..(((.((....(((.....)))....)).)))))))	chr19:54970398-54970664(+)$1	1	65	104	14.7520
(((((((..(((.((......))))).))))))).))..	chr2:242255243-242255535(+)$1	1	89	128	14.2061
((..(((.((....(((.....)))....)).)))))))	chr19:54970334-54970569(+)$1	1	129	168	14.7520
((((.(.(((((.(((......))).))))).).)))))	chr9:137024366-137024629(+)$1	1	13	52	16.9614
((((((((((((.(((......))).))).)))))).))	chr8:145149889-145150126(+)$1	1	175	214	15.5567
((((..((((((.(((......)))))))))...)))))	chr22:22336781-22337052(-)$1	1	209	248	16.1294
(((...(((((.((((.....)))).)))))))))))).	chr22:20068065-20068288(+)$1	1	21	60	13.3451
(((.(((((((.((((......))))))))))).).)))	chr15:91505731-91505995(+)$1	1	6	45	15.4505
(..(((((.((((((((......))))))....)).)))	chr1:182360457-182360748(-)$1	1	227	266	13.1543
(...(((.((...(((((...)))))...)).)))....	chr3:196304350-196304621(+)$1	1	60	99	12.8526
....((((.(((((.(......).)))))))))))))))	chr5:138630573-138630830(+)$1	1	27	66	14.2095
(.(((.((((((.((((.....)))).))))).).))).	chr6:170151701-170152074(+)$1	1	117	156	12.8134
((.((((.(((.((((......))))))).)))))))))	chr19:54970319-54970534(+)$1	1	85	124	14.9483
(.(((.(..(((((((.....)))))))..)...))).)	chrX:152936704-152937006(-)$1	1	48	87	14.0672
(...((((.(((.((((....)))).)))...)))))))	chr20:42295702-42296047(+)$1	1	130	169	13.5722
((((((((((((.(((......))))))).))))))).)	chr1:62902812-62903072(+)$1	1	3	42	15.7695
(((...((((((((((......)))))))))).)))).)	chr21:30671736-30671992(+)$1	1	213	252	16.9168
(((...((((((.(((......)))))))))....))))	chr1:114517527-114517824(+)$1	1	147	186	16.3799
((((((..(((.(((((.....))))).)))))))))).	chr4:39979247-39979498(-)$1	1	79	118	12.6353
(((((((...((((((...)))))).)))))))))).).	chr1:20234886-20235135(+)$1	1	42	81	12.2294
.(((((...((..(((......)))..)).))))).)..	chr22:21801286-21801544(+)$1	1	195	234	15.5160
((....((((((((((......))))))))))))))).)	chr2:74691996-74692401(-)$1	1	138	177	17.2382
(...((((.(((((.((......)).)))))..))))..	chr19:10766106-10766356(+)$1	1	119	158	14.0936
(...(((((.((((((......)))).)).)))))...)	chr19:18547932-18548224(-)$1	1	12	51	14.7949
(((((.((((..((((......))).)..))))))))))	chr7:923731-923943(+)$1	1	163	202	16.2193
((.(((((.((.(((((......))))).))..))))).	chr19:8551041-8551271(+)$1	1	76	115	13.5748
((.(.(.(.(...((((.....))))....).).).)))	chr14:70234468-70234783(+)$1	1	98	137	14.6494
((((((((.((..(((......))).)))))))))))..	chr17:79879200-79879436(-)$1	1	96	135	17.7942
(.((.(((((((.((((...)))).)))))))...))))	chr19:54970695-54970939(+)$1	1	185	224	12.3941
..(((..(((((.(((......))).)))))...)))..	chr2:74685302-74685603(+)$1	1	169	208	13.4484
.((.((((((((((.(......))))))))....))).)	chr1:225615213-225615446(-)$1	1	176	215	15.0286
((..(((..(((.((.(......).)).)))..))))))	chr16:89337988-89338244(-)$1	1	117	156	15.8256
(...(((((((((((((......))))))))).))))..	chr13:27825765-27826078(+)$1	1	202	241	15.4050
(.(((.(((((..(((......)))..))))).))).))	chr17:29632114-29632405(+)$1	1	142	181	16.6974
.(((((((((.(((((......)))..)).))).)))))	chr12:104682370-104682650(+)$1	1	44	83	14.5599

#PSSM
c : 0.25	f : 0.12	g : 0.12	= : 0.11	e : 0.07	d : 0.05	[ : 0.03	" : 0.03	# : 0.03	a : 0.03	i : 0.03	: : 0.03	& : 0.01	
" : 0.16	c : 0.12	g : 0.12	f : 0.11	= : 0.09	[ : 0.09	e : 0.07	# : 0.03	d : 0.03	i : 0.03	a : 0.01	& : 0.01	! : 0.01	: : 0.01	b : 0.01	
" : 0.16	! : 0.11	c : 0.11	= : 0.09	f : 0.09	g : 0.09	[ : 0.07	# : 0.05	e : 0.05	d : 0.03	a : 0.03	i : 0.03	b : 0.03	
" : 0.25	! : 0.12	f : 0.07	= : 0.07	e : 0.07	[ : 0.07	g : 0.07	c : 0.07	# : 0.05	d : 0.03	i : 0.03	a : 0.01	b : 0.01	
c : 0.20	d : 0.12	" : 0.11	g : 0.11	e : 0.11	! : 0.07	f : 0.05	= : 0.05	[ : 0.05	i : 0.03	a : 0.01	b : 0.01	# : 0.01	
c : 0.14	g : 0.12	d : 0.12	e : 0.11	" : 0.09	[ : 0.07	b : 0.05	f : 0.05	! : 0.05	# : 0.05	= : 0.03	a : 0.03	i : 0.01	
d : 0.16	c : 0.14	e : 0.12	g : 0.11	f : 0.09	= : 0.07	a : 0.05	[ : 0.05	b : 0.03	" : 0.03	# : 0.03	! : 0.03	i : 0.01	
e : 0.16	d : 0.14	[ : 0.12	! : 0.11	g : 0.11	f : 0.07	= : 0.05	c : 0.05	" : 0.05	# : 0.03	a : 0.03	i : 0.01	
[ : 0.16	e : 0.12	c : 0.11	! : 0.09	g : 0.09	f : 0.07	d : 0.07	b : 0.07	= : 0.05	" : 0.05	# : 0.05	i : 0.01	
c : 0.22	b : 0.16	g : 0.14	e : 0.12	d : 0.07	a : 0.05	= : 0.05	" : 0.03	[ : 0.03	f : 0.03	# : 0.01	i : 0.01	
c : 0.20	g : 0.14	b : 0.12	e : 0.12	" : 0.11	# : 0.07	= : 0.05	f : 0.05	! : 0.03	d : 0.01	i : 0.01	[ : 0.01	
[ : 0.14	! : 0.12	c : 0.12	" : 0.11	g : 0.09	e : 0.09	# : 0.07	f : 0.07	= : 0.05	b : 0.05	d : 0.01	i : 0.01	
[ : 0.24	d : 0.12	! : 0.09	" : 0.09	g : 0.07	e : 0.07	# : 0.05	= : 0.05	c : 0.05	b : 0.03	a : 0.03	f : 0.03	i : 0.01	
c : 0.31	d : 0.24	e : 0.09	b : 0.07	g : 0.07	# : 0.05	= : 0.05	[ : 0.03	f : 0.03	i : 0.01	
c : 0.40	d : 0.24	b : 0.05	= : 0.05	g : 0.05	e : 0.05	[ : 0.05	f : 0.03	o : 0.01	i : 0.01	
c : 0.38	d : 0.24	o : 0.07	= : 0.05	g : 0.05	e : 0.05	f : 0.03	a : 0.03	b : 0.01	[ : 0.01	i : 0.01	
o : 0.53	c : 0.11	d : 0.11	n : 0.05	e : 0.05	l : 0.03	r : 0.01	f : 0.01	b : 0.01	a : 0.01	i : 0.01	
o : 0.68	n : 0.16	l : 0.05	m : 0.03	r : 0.01	c : 0.01	e : 0.01	
o : 0.68	n : 0.16	l : 0.07	m : 0.05	r : 0.01	
o : 0.68	n : 0.16	m : 0.05	l : 0.03	r : 0.01	d : 0.01	f : 0.01	
o : 0.66	n : 0.16	m : 0.05	d : 0.03	b : 0.01	r : 0.01	l : 0.01	f : 0.01	
o : 0.61	n : 0.11	d : 0.11	b : 0.05	c : 0.01	r : 0.01	m : 0.01	e : 0.01	g : 0.01	f : 0.01	
c : 0.37	d : 0.22	o : 0.14	= : 0.05	b : 0.03	g : 0.03	e : 0.03	a : 0.03	] : 0.01	r : 0.01	f : 0.01	
c : 0.44	d : 0.22	g : 0.07	= : 0.05	e : 0.05	f : 0.03	2 : 0.01	r : 0.01	] : 0.01	b : 0.01	a : 0.01	i : 0.01	
c : 0.42	d : 0.20	g : 0.07	e : 0.07	= : 0.05	f : 0.03	] : 0.03	2 : 0.01	3 : 0.01	r : 0.01	b : 0.01	i : 0.01	
] : 0.27	d : 0.14	g : 0.11	c : 0.09	e : 0.07	4 : 0.05	= : 0.05	f : 0.05	2 : 0.05	b : 0.03	3 : 0.01	i : 0.01	
c : 0.14	g : 0.14	e : 0.12	] : 0.07	d : 0.07	4 : 0.07	= : 0.07	3 : 0.05	b : 0.05	f : 0.05	2 : 0.05	a : 0.03	i : 0.01	
c : 0.18	g : 0.16	e : 0.14	b : 0.09	4 : 0.07	= : 0.07	d : 0.05	] : 0.05	f : 0.05	3 : 0.03	a : 0.01	2 : 0.01	i : 0.01	
c : 0.20	g : 0.14	e : 0.14	b : 0.09	4 : 0.07	= : 0.07	d : 0.05	2 : 0.05	f : 0.05	3 : 0.03	i : 0.03	] : 0.01	
] : 0.16	g : 0.12	e : 0.12	b : 0.11	c : 0.07	d : 0.07	= : 0.07	f : 0.05	4 : 0.05	2 : 0.03	3 : 0.03	i : 0.03	a : 0.01	
e : 0.16	b : 0.11	g : 0.11	] : 0.07	f : 0.07	3 : 0.07	a : 0.07	= : 0.07	c : 0.07	d : 0.07	4 : 0.05	i : 0.03	
g : 0.14	3 : 0.12	] : 0.11	2 : 0.09	e : 0.09	= : 0.07	d : 0.07	4 : 0.07	c : 0.05	a : 0.03	f : 0.03	b : 0.03	i : 0.03	
2 : 0.12	c : 0.12	3 : 0.12	g : 0.11	d : 0.11	] : 0.09	e : 0.07	4 : 0.07	f : 0.03	= : 0.03	a : 0.03	b : 0.01	i : 0.01	
c : 0.18	d : 0.14	] : 0.11	e : 0.09	3 : 0.09	g : 0.07	2 : 0.05	f : 0.05	= : 0.05	4 : 0.05	i : 0.03	b : 0.01	a : 0.01	
c : 0.22	f : 0.12	d : 0.11	= : 0.09	e : 0.09	g : 0.07	a : 0.05	] : 0.05	2 : 0.03	4 : 0.03	3 : 0.03	i : 0.03	b : 0.01	
c : 0.24	f : 0.12	] : 0.11	d : 0.11	= : 0.09	e : 0.07	g : 0.07	b : 0.05	4 : 0.03	i : 0.03	2 : 0.01	3 : 0.01	
c : 0.16	g : 0.14	f : 0.14	e : 0.11	= : 0.09	d : 0.09	b : 0.05	] : 0.05	4 : 0.03	a : 0.03	i : 0.03	3 : 0.01	
f : 0.18	c : 0.14	g : 0.12	e : 0.11	] : 0.11	= : 0.09	2 : 0.05	3 : 0.05	d : 0.03	4 : 0.01	a : 0.01	i : 0.01	: : 0.01	
f : 0.20	g : 0.14	] : 0.11	= : 0.09	e : 0.09	c : 0.07	d : 0.07	2 : 0.05	3 : 0.03	8 : 0.01	4 : 0.01	a : 0.01	i : 0.01	: : 0.01	b : 0.01	

#score	804.2382707792589
#seq	54
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546EKR_PPIL4_transcript_m1_run1.txt

#BEAR
ii[cccuuuuuuuuuuuuccc]ii	chr11:65267658-65267863(+)$1	205	24	48	24.4203
====wwwwwwwwwwwwww======	chr11:62300887-62301156(-)$1	269	64	88	22.2925
eeeeewwwwwwwwwwwwwweeeee	chr11:65266718-65266923(+)$1	205	20	44	23.4939
!!ddddvvvvvvvvvvvvvddddf	chr11:62285644-62285890(-)$1	246	104	128	24.1846
hhhhhvvvvvvvvvvvvvhhhhhh	chr22:48162717-48162992(+)$1	275	185	209	21.6423
%%ddddtttttttttttddddggg	chr2:198694459-198694743(+)$1	284	186	210	20.9093
eeeeewwwwwwwwwwwwwweeeee	chr11:65267496-65267698(+)$1	202	82	106	23.4939
b[cccvvvvvvvvvvvvvccc]bb	chr16:20692748-20693041(+)$1	293	145	169	23.9209
:bbcccuuuuuuuuuuuuccc]bb	chr5:126237475-126237764(-)$1	289	233	257	22.4005
"eeeeeuuuuuuuuuuuueeeee4	chr7:119436982-119437237(-)$1	255	149	173	24.0928
gggggggtttttttttttgggggg	chr7:120887080-120887298(+)$1	218	135	159	21.4405
eeeeewwwwwwwwwwwwwweeeee	chr11:65267498-65267702(+)$1	204	80	104	23.4939
a[ddddvvvvvvvvvvvvvdddd]	chr1:214813635-214813882(+)$1	247	54	78	24.1175
deeeeevvvvvvvvvvvvveeeee	chr4:760919-761174(-)$1	255	222	246	24.3438
####ccctttttttttttccc777	chr8:59542509-59542786(-)$1	277	67	91	20.6467
!!ddddattttttttttta]dddd	chr7:119344792-119345158(-)$1	366	309	333	22.8660
fffffwwwwwwwwwwwwwwfffff	chr8:91266801-91267073(+)$1	272	33	57	21.8564
"eeeeevvvvvvvvvvvvveeeee	chr11:62283814-62284051(-)$1	237	75	99	24.5065
gggggwwwwwwwwwwwwwwggggg	chr11:65266531-65266734(+)$1	203	170	194	22.8393
bb[ccctttttttttttcccbb22	chr7:107145998-107146286(-)$1	288	75	99	21.1139
eeeeewwwwwwwwwwwwwweeeee	chr11:65266526-65266731(+)$1	205	96	120	23.4939
!!ddddtttttttttttdddd]bb	chr11:65267699-65267903(+)$1	204	143	167	22.2932
gggg[awwwwwwwwwwwwwwa]gg	chr7:120887262-120887516(+)$1	254	114	138	22.5323
ddd[bbuuuuuuuuuuuubb]ddd	chr22:48037763-48038034(+)$1	271	15	39	22.2149
eeeeevvvvvvvvvvvvveeeeed	chr8:91268636-91268881(+)$1	245	41	65	24.1729
DDddddvvvvvvvvvvvvvdddd:	chr1:41634549-41634810(-)$1	261	8	32	20.8710
""ddddvvvvvvvvvvvvvdddd3	chr6:167405882-167406136(-)$1	254	225	249	24.1680
!!ddddtttttttttttdddd]bb	chr11:65267727-65267944(+)$1	217	115	139	22.2932
ii[cccuuuuuuuuuuuuccc]ii	chr11:65267664-65267867(+)$1	203	18	42	24.4203
ccccccuuuuuuuuuuuuccc::D	chr7:120897980-120898221(+)$1	241	52	76	21.0783
eeeeewwwwwwwwwwwwwweeeee	chr11:65267478-65267696(+)$1	218	100	124	23.4939
:eeeeeuuuuuuuuuuuueeeee:	chr6:10938141-10938427(+)$1	286	69	93	22.3460
fffffwwwwwwwwwwwwwwfffff	chr11:65268599-65268824(+)$1	225	36	60	21.8564
c"""ccctttttttttttccc444	chr11:62292333-62292590(-)$1	257	92	116	22.4246
"""cccuuuuuuuuuuuuccc22b	chr19:34872745-34873013(+)$1	268	18	42	23.8819
gggggwwwwwwwwwwwwwwggggg	chr7:119439547-119439763(-)$1	216	6	30	22.8393
ddd[bbuuuuuuuuuuuubb]ddd	chr7:120797398-120797718(+)$1	320	8	32	22.2149
e!!cccuuuuuuuuuuuuccc333	chr8:91273652-91273928(+)$1	276	186	210	24.5146
cc[cccuuuuuuuuuuuuccc22c	chr6:147625832-147626092(+)$1	260	53	77	23.8642
eeeeewwwwwwwwwwwwwweeeee	chr11:65267447-65267651(+)$1	204	131	155	23.4939
!eeeeeuuuuuuuuuuuueeeee4	chr7:119526628-119526881(-)$1	253	38	62	24.1418
gg[cccuuuuuuuuuuuuccc22g	chr8:130437603-130437873(-)$1	270	62	86	23.9788
b[ddddtttttttttttdddd]bb	chr11:65266729-65266958(+)$1	229	26	50	21.9687
ff[cccuuuuuuuuuuuuccc]ff	chr7:120797285-120797598(+)$1	313	273	297	24.0294
ffffffvvvvvvvvvvvvvfffff	chr21:39438727-39438982(-)$1	255	82	106	22.6782
eeeeevvvvvvvvvvvvveeeeed	chr8:91268608-91268836(+)$1	228	69	93	24.1729
eeeeewwwwwwwwwwwwwweeeee	chr7:119430263-119430512(-)$1	249	144	168	23.4939
c[cccvvvvvvvvvvvvvccc]cc	chr4:104079676-104079954(-)$1	278	170	194	24.3816
e[dddduuuuuuuuuuuuddddee	chr19:21631277-21631596(-)$1	319	38	62	23.8432
d[ddddyyyyyyyyyyyyyyyydd	chr22:50021845-50022112(-)$1	267	134	158	19.5478
!eeeeeuuuuuuuuuuuueeeee2	chr9:134079583-134079906(+)$1	323	98	122	23.9407
Geeeeevvvvvvvvvvvvveeeee	chr22:50034937-50035178(-)$1	241	30	54	23.9363
ff!!bbtttttttttttbb22fff	chr7:119429565-119429824(-)$1	259	95	119	20.2885
eeeeewwwwwwwwwwwwwweeeee	chr11:65266502-65266709(+)$1	207	120	144	23.4939
d!!ccctttttttttttccc22dd	chr7:119433011-119433271(-)$1	260	230	254	22.5044
b[ddddtttttttttttdddd]bb	chr11:65266687-65266901(+)$1	214	68	92	21.9687
d!!cccuuuuuuuuuuuuccc]dd	chr7:105899226-105899551(-)$1	325	137	161	24.4937
dd[ddddtttttttttttdddddd	chr1:167746075-167746365(+)$1	290	155	179	21.6839
:eeeeeuuuuuuuuuuuueeeee:	chr15:20622848-20623091(-)$1	243	71	95	22.3460
ii[cccuuuuuuuuuuuuccc]ii	chr11:65267649-65267858(+)$1	209	33	57	24.4203

#otherMatches

#Seq PSSM
UUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267658-65267863(+)$1	205	24	48	24.4203
ACUUGGGUGGCAGAGGAGGGGUCC	chr11:62300887-62301156(-)$1	269	64	88	22.2925
GGAAGGAAAAGAUAAAAGGUUUCU	chr11:65266718-65266923(+)$1	205	20	44	23.4939
CAAGCCUGCAGGGAGAUCUGGCUG	chr11:62285644-62285890(-)$1	246	104	128	24.1846
agggcagucauccucuccguccug	chr22:48162717-48162992(+)$1	275	185	209	21.6423
UCAUGAUCUACAUUUACUCAUUUA	chr2:198694459-198694743(+)$1	284	186	210	20.9093
UUUAGAAGAAUACUUGAAGCUAGA	chr11:65267496-65267698(+)$1	202	82	106	23.4939
gcaguaauaacucaacacacuacc	chr16:20692748-20693041(+)$1	293	145	169	23.9209
AGUCCUGCUGAAAUAACAAGGCAC	chr5:126237475-126237764(-)$1	289	233	257	22.4005
aggucaggcagcauucaaugacca	chr7:119436982-119437237(-)$1	255	149	173	24.0928
AUAAUUGAGGAGGCAAAGCAAUUA	chr7:120887080-120887298(+)$1	218	135	159	21.4405
UUUAGAAGAAUACUUGAAGCUAGA	chr11:65267498-65267702(+)$1	204	80	104	23.4939
UGGACAGAGAAAACCUAAGUGUCG	chr1:214813635-214813882(+)$1	247	54	78	24.1175
AGCUGCUCACCCUGUCCCUGCAGC	chr4:760919-761174(-)$1	255	222	246	24.3438
acuaaccacaucaaagccgguaua	chr8:59542509-59542786(-)$1	277	67	91	20.6467
ccaaagcagacuaauacagacuuu	chr7:119344792-119345158(-)$1	366	309	333	22.8660
gaugcaaacaugaacuaaagcauu	chr8:91266801-91267073(+)$1	272	33	57	21.8564
UAAGAUUUCAUAUAUAUAUAUUUU	chr11:62283814-62284051(-)$1	237	75	99	24.5065
UUAAGAGAAAAUAUGAAGACUUAG	chr11:65266531-65266734(+)$1	203	170	194	22.8393
ccauggcacaaaagaacccaggcg	chr7:107145998-107146286(-)$1	288	75	99	21.1139
ACUUAAAAAAUAUAGUCAAUAGGU	chr11:65266526-65266731(+)$1	205	96	120	23.4939
ACUAGCAUUAAUUGACAGCUGACC	chr11:65267699-65267903(+)$1	204	143	167	22.2932
gggugcaaaauaaaaauacaggau	chr7:120887262-120887516(+)$1	254	114	138	22.5323
uggaugcacacaaagaaacaaccg	chr22:48037763-48038034(+)$1	271	15	39	22.2149
cuugacacaacugaaauuucaagc	chr8:91268636-91268881(+)$1	245	41	65	24.1729
gaccacagcaaacaaaaaggugga	chr1:41634549-41634810(-)$1	261	8	32	20.8710
CGUGCUAAACAAGUUUAAAAGCAA	chr6:167405882-167406136(-)$1	254	225	249	24.1680
ACUAGCAUUAAUUGACAGCUGACC	chr11:65267727-65267944(+)$1	217	115	139	22.2932
UUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267664-65267867(+)$1	203	18	42	24.4203
UCUUCCACAUAUACAUAAGGACAG	chr7:120897980-120898221(+)$1	241	52	76	21.0783
UUUAGAAGAAUACUUGAAGCUAGA	chr11:65267478-65267696(+)$1	218	100	124	23.4939
aguauuuaaagaaaaauuaaugcc	chr6:10938141-10938427(+)$1	286	69	93	22.3460
AAUUCGUUUUGUAAAUGUAGAGUU	chr11:65268599-65268824(+)$1	225	36	60	21.8564
AAAGUGGAUAUUAAUGCCCCAGAU	chr11:62292333-62292590(-)$1	257	92	116	22.4246
GCAGCCACCAUCUGUAAAGGCCAA	chr19:34872745-34873013(+)$1	268	18	42	23.8819
UUUCUAAUAUAAAAAUCACAGAAA	chr7:119439547-119439763(-)$1	216	6	30	22.8393
GGGGUCGAGUGCACCAGGGAGCCC	chr7:120797398-120797718(+)$1	320	8	32	22.2149
cacuguaucuuaaaaucggcaaaa	chr8:91273652-91273928(+)$1	276	186	210	24.5146
cuggacgugagacaagaagucaaa	chr6:147625832-147626092(+)$1	260	53	77	23.8642
UUUAGAAGAAUACUUGAAGCUAGA	chr11:65267447-65267651(+)$1	204	131	155	23.4939
acagacagagauucaacaguuugg	chr7:119526628-119526881(-)$1	253	38	62	24.1418
aggcauaagagugauacaauggac	chr8:130437603-130437873(-)$1	270	62	86	23.9788
GGUUUCUAAAACAUGACGGAGGUU	chr11:65266729-65266958(+)$1	229	26	50	21.9687
GUAGCCAGUUCAUAGUUAGGCCAU	chr7:120797285-120797598(+)$1	313	273	297	24.0294
cagccuuucuauuguuuuuaggcu	chr21:39438727-39438982(-)$1	255	82	106	22.6782
cuugacacaacugaaauuucaagc	chr8:91268608-91268836(+)$1	228	69	93	24.1729
GAUUAGACUGACAGAACAAUAAUC	chr7:119430263-119430512(-)$1	249	144	168	23.4939
AUACUGUUAACAUGGUAAGGUUUU	chr4:104079676-104079954(-)$1	278	170	194	24.3816
UUCAAUGAUAGAAAUGAAAUUGAU	chr19:21631277-21631596(-)$1	319	38	62	23.8432
UUUGGCUCAAGUUAAAGGAAAUGC	chr22:50021845-50022112(-)$1	267	134	158	19.5478
aagaagaaccaaauagaauuucua	chr9:134079583-134079906(+)$1	323	98	122	23.9407
CUGGCUUUUACUGUCGCCCAGCCA	chr22:50034937-50035178(-)$1	241	30	54	23.9363
UCUUGCCAUAGUUUUUUGCUUGAU	chr7:119429565-119429824(-)$1	259	95	119	20.2885
ACUUAAAAAAUAUAGUCAAUAGGU	chr11:65266502-65266709(+)$1	207	120	144	23.4939
gcagaauacacauucuuuucauca	chr7:119433011-119433271(-)$1	260	230	254	22.5044
GGUUUCUAAAACAUGACGGAGGUU	chr11:65266687-65266901(+)$1	214	68	92	21.9687
aacgcuaucguaccaaacagcauc	chr7:105899226-105899551(-)$1	325	137	161	24.4937
ugauguuaaauuacuaaaagcaca	chr1:167746075-167746365(+)$1	290	155	179	21.6839
AGAGAAAAAUAAGUCAUAUUCUCA	chr15:20622848-20623091(-)$1	243	71	95	22.3460
UUGGAAGAGUUAGAAGAAUUUGGA	chr11:65267649-65267858(+)$1	209	33	57	24.4203

#DB
((.(((............))).))	chr11:65267658-65267863(+)$1	1	24	48	24.4203
((((..............))))))	chr11:62300887-62301156(-)$1	1	64	88	22.2925
(((((..............)))))	chr11:65266718-65266923(+)$1	1	20	44	23.4939
..((((.............)))))	chr11:62285644-62285890(-)$1	1	104	128	24.1846
(((((.............))))))	chr22:48162717-48162992(+)$1	1	185	209	21.6423
..((((...........)))))))	chr2:198694459-198694743(+)$1	1	186	210	20.9093
(((((..............)))))	chr11:65267496-65267698(+)$1	1	82	106	23.4939
(.(((.............))).))	chr16:20692748-20693041(+)$1	1	145	169	23.9209
.(((((............))).))	chr5:126237475-126237764(-)$1	1	233	257	22.4005
.(((((............))))).	chr7:119436982-119437237(-)$1	1	149	173	24.0928
(((((((...........))))))	chr7:120887080-120887298(+)$1	1	135	159	21.4405
(((((..............)))))	chr11:65267498-65267702(+)$1	1	80	104	23.4939
(.((((.............)))).	chr1:214813635-214813882(+)$1	1	54	78	24.1175
((((((.............)))))	chr4:760919-761174(-)$1	1	222	246	24.3438
....(((...........)))...	chr8:59542509-59542786(-)$1	1	67	91	20.6467
..(((((...........).))))	chr7:119344792-119345158(-)$1	1	309	333	22.8660
(((((..............)))))	chr8:91266801-91267073(+)$1	1	33	57	21.8564
.(((((.............)))))	chr11:62283814-62284051(-)$1	1	75	99	24.5065
(((((..............)))))	chr11:65266531-65266734(+)$1	1	170	194	22.8393
((.(((...........)))))..	chr7:107145998-107146286(-)$1	1	75	99	21.1139
(((((..............)))))	chr11:65266526-65266731(+)$1	1	96	120	23.4939
..((((...........)))).))	chr11:65267699-65267903(+)$1	1	143	167	22.2932
((((.(..............).))	chr7:120887262-120887516(+)$1	1	114	138	22.5323
(((.((............)).)))	chr22:48037763-48038034(+)$1	1	15	39	22.2149
(((((.............))))))	chr8:91268636-91268881(+)$1	1	41	65	24.1729
((((((.............)))).	chr1:41634549-41634810(-)$1	1	8	32	20.8710
..((((.............)))).	chr6:167405882-167406136(-)$1	1	225	249	24.1680
..((((...........)))).))	chr11:65267727-65267944(+)$1	1	115	139	22.2932
((.(((............))).))	chr11:65267664-65267867(+)$1	1	18	42	24.4203
)))(((............)))..(	chr7:120897980-120898221(+)$1	1	52	76	21.0783
(((((..............)))))	chr11:65267478-65267696(+)$1	1	100	124	23.4939
.(((((............))))).	chr6:10938141-10938427(+)$1	1	69	93	22.3460
(((((..............)))))	chr11:65268599-65268824(+)$1	1	36	60	21.8564
(...(((...........)))...	chr11:62292333-62292590(-)$1	1	92	116	22.4246
...(((............)))..)	chr19:34872745-34873013(+)$1	1	18	42	23.8819
(((((..............)))))	chr7:119439547-119439763(-)$1	1	6	30	22.8393
(((.((............)).)))	chr7:120797398-120797718(+)$1	1	8	32	22.2149
(..(((............)))...	chr8:91273652-91273928(+)$1	1	186	210	24.5146
((.(((............)))..)	chr6:147625832-147626092(+)$1	1	53	77	23.8642
(((((..............)))))	chr11:65267447-65267651(+)$1	1	131	155	23.4939
.(((((............))))).	chr7:119526628-119526881(-)$1	1	38	62	24.1418
((.(((............)))..)	chr8:130437603-130437873(-)$1	1	62	86	23.9788
(.((((...........)))).))	chr11:65266729-65266958(+)$1	1	26	50	21.9687
((.(((............))).))	chr7:120797285-120797598(+)$1	1	273	297	24.0294
((((((.............)))))	chr21:39438727-39438982(-)$1	1	82	106	22.6782
(((((.............))))))	chr8:91268608-91268836(+)$1	1	69	93	24.1729
(((((..............)))))	chr7:119430263-119430512(-)$1	1	144	168	23.4939
(.(((.............))).))	chr4:104079676-104079954(-)$1	1	170	194	24.3816
(.((((............))))))	chr19:21631277-21631596(-)$1	1	38	62	23.8432
(.((((................))	chr22:50021845-50022112(-)$1	1	134	158	19.5478
.(((((............))))).	chr9:134079583-134079906(+)$1	1	98	122	23.9407
((((((.............)))))	chr22:50034937-50035178(-)$1	1	30	54	23.9363
((..((...........))..)))	chr7:119429565-119429824(-)$1	1	95	119	20.2885
(((((..............)))))	chr11:65266502-65266709(+)$1	1	120	144	23.4939
(..(((...........)))..))	chr7:119433011-119433271(-)$1	1	230	254	22.5044
(.((((...........)))).))	chr11:65266687-65266901(+)$1	1	68	92	21.9687
(..(((............))).))	chr7:105899226-105899551(-)$1	1	137	161	24.4937
((.((((...........))))))	chr1:167746075-167746365(+)$1	1	155	179	21.6839
.(((((............))))).	chr15:20622848-20623091(-)$1	1	71	95	22.3460
((.(((............))).))	chr11:65267649-65267858(+)$1	1	33	57	24.4203

#PSSM
e : 0.19	d : 0.11	! : 0.09	g : 0.08	f : 0.08	b : 0.06	" : 0.06	c : 0.06	i : 0.05	: : 0.05	= : 0.01	h : 0.01	% : 0.01	a : 0.01	# : 0.01	D : 0.01	G : 0.01	
e : 0.30	! : 0.11	[ : 0.11	g : 0.08	f : 0.08	i : 0.05	d : 0.05	" : 0.05	b : 0.03	c : 0.03	= : 0.01	h : 0.01	% : 0.01	# : 0.01	D : 0.01	
e : 0.30	d : 0.23	[ : 0.13	g : 0.06	! : 0.06	c : 0.05	f : 0.05	" : 0.03	= : 0.01	h : 0.01	b : 0.01	# : 0.01	
e : 0.30	c : 0.24	d : 0.21	g : 0.06	f : 0.05	[ : 0.03	= : 0.01	h : 0.01	# : 0.01	" : 0.01	! : 0.01	
e : 0.30	c : 0.28	d : 0.21	g : 0.05	f : 0.05	b : 0.05	w : 0.01	h : 0.01	[ : 0.01	
c : 0.24	w : 0.21	d : 0.21	e : 0.13	v : 0.08	b : 0.05	g : 0.01	a : 0.01	f : 0.01	
u : 0.31	w : 0.23	v : 0.21	t : 0.13	c : 0.03	g : 0.01	a : 0.01	y : 0.01	d : 0.01	
u : 0.31	w : 0.23	v : 0.21	t : 0.21	y : 0.01	
u : 0.31	w : 0.23	v : 0.21	t : 0.21	y : 0.01	
u : 0.31	w : 0.23	v : 0.21	t : 0.21	y : 0.01	
u : 0.31	w : 0.23	v : 0.21	t : 0.21	y : 0.01	
u : 0.31	w : 0.23	v : 0.21	t : 0.21	y : 0.01	
u : 0.31	w : 0.23	v : 0.21	t : 0.21	y : 0.01	
u : 0.31	w : 0.23	v : 0.21	t : 0.21	y : 0.01	
u : 0.31	w : 0.23	v : 0.21	t : 0.21	y : 0.01	
u : 0.31	w : 0.23	v : 0.21	t : 0.21	y : 0.01	
u : 0.31	w : 0.23	v : 0.21	t : 0.21	y : 0.01	
u : 0.31	w : 0.23	v : 0.21	d : 0.08	t : 0.08	c : 0.03	y : 0.01	b : 0.01	
c : 0.28	w : 0.21	v : 0.13	d : 0.11	e : 0.11	b : 0.05	= : 0.01	h : 0.01	g : 0.01	a : 0.01	y : 0.01	
e : 0.30	c : 0.28	d : 0.18	g : 0.05	f : 0.05	b : 0.03	= : 0.01	h : 0.01	] : 0.01	w : 0.01	y : 0.01	2 : 0.01	
e : 0.30	c : 0.24	d : 0.19	g : 0.05	f : 0.05	] : 0.03	2 : 0.03	= : 0.01	h : 0.01	b : 0.01	a : 0.01	y : 0.01	
e : 0.30	] : 0.21	d : 0.15	g : 0.06	f : 0.06	2 : 0.06	= : 0.01	h : 0.01	7 : 0.01	b : 0.01	: : 0.01	4 : 0.01	3 : 0.01	y : 0.01	
e : 0.31	d : 0.18	b : 0.09	g : 0.08	f : 0.08	2 : 0.06	i : 0.05	= : 0.01	h : 0.01	7 : 0.01	: : 0.01	4 : 0.01	3 : 0.01	c : 0.01	
e : 0.19	d : 0.15	b : 0.11	f : 0.09	g : 0.09	i : 0.05	4 : 0.05	: : 0.05	2 : 0.03	3 : 0.03	c : 0.03	= : 0.01	h : 0.01	] : 0.01	7 : 0.01	D : 0.01	

#score	1377.8589827982628
#seq	60
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_CDS_m2_run1.txt

#BEAR
eeeeennnnneeeee	chr4:74318075-74318353(+)$1	278	195	210	11.7415
eeeeennnnneeeee	chr3:133467252-133467533(+)$1	281	173	188	11.7415
!!cccnnnnncccee	chr3:186336255-186336509(+)$1	254	121	136	10.5234
ddcccnnnnnccc22	chr6:170893553-170893810(-)$1	257	145	160	9.4794
gggggnnnnnggggg	chr19:17355915-17356262(-)$1	347	315	330	9.9859
gggggnnnnnggggg	chr5:154135506-154135781(+)$1	275	114	129	9.9859
eeeeennnnneeeee	chrM:15085-15306(+)$1	221	119	134	11.7415
h[cccnnnnnccc]h	chr19:47249399-47249656(-)$1	257	145	160	9.6496
eeeeennnnneeeee	chrM:7153-7375(+)$1	222	106	121	11.7415
[a[bbnnnnnbb]a]	chr2:21228768-21229014(-)$1	246	107	122	8.6398
""cccnnnnnccc33	chr19:50985390-50985643(+)$1	253	203	218	9.8952
##cccnnnnnccc44	chrM:6827-7032(+)$1	205	31	46	9.7818
eeeeennnnneeeee	chrM:3296-3548(+)$1	252	173	188	11.7415
eeeeennnnneeeee	chr1:229694147-229694416(-)$1	269	71	86	11.7415
eeeeennnnneeeee	chrM:10557-10775(+)$1	218	29	44	11.7415
eeeeennnnneeeee	chrM:6160-6368(+)$1	208	2	17	11.7415
!ddddnnnnndddd]	chr3:52567610-52567866(-)$1	256	5	20	10.2431
eeeeennnnneeeee	chr19:2015513-2015791(-)$1	278	153	168	11.7415
cddddnnnnndddd]	chr18:12376923-12377176(-)$1	253	69	84	10.0644
"ddddnnnnndddd4	chr2:216272966-216273193(-)$1	227	198	213	10.0435
eeeeennnnneeeee	chr20:62371657-62371968(+)$1	311	235	250	11.7415
ee[bbnnnnnbbeee	chr19:2270408-2270710(+)$1	302	173	188	9.7384
eeeeennnnneeeee	chrM:15017-15226(+)$1	209	187	202	11.7415
##cccnnnnnccc44	chrM:6832-7052(+)$1	220	26	41	9.7818
=====nnnnn=====	chrM:14191-14399(-)$1	208	179	194	10.1075
eeeeennnnneeeee	chrM:10575-10780(+)$1	205	11	26	11.7415
ee[bbnnnnnbb]ee	chrM:8094-8317(+)$1	223	57	72	9.4500
eeeeennnnneeeee	chrM:15064-15278(+)$1	214	140	155	11.7415
ccc[annnnna]ccc	chr5:154135174-154135469(+)$1	295	48	63	9.3320
gggggnnnnnggggg	chr12:9245960-9246185(-)$1	225	35	50	9.9859
gggggnnnnnggggg	chr4:74283234-74283480(+)$1	246	145	160	9.9859
gggggnnnnnggggg	chr7:155090082-155090329(+)$1	247	19	34	9.9859
b[cccnnnnnccc]b	chr4:74275052-74275304(+)$1	252	120	135	9.2155
ddddannnnna]ddd	chr19:14552003-14552274(+)$1	271	246	261	9.5936
eeeeennnnneeeee	chrM:6145-6349(+)$1	204	17	32	11.7415
eeeeennnnneeeee	chr19:6697304-6697566(-)$1	262	5	20	11.7415
=====nnnnn=====	chrM:14157-14378(-)$1	221	158	173	10.1075
eeeeennnnneeeee	chr1:2126017-2126311(-)$1	294	2	17	11.7415
eeeeennnnneeeee	chrM:6155-6360(+)$1	205	7	22	11.7415
eeeeennnnneeeee	chrM:7139-7353(+)$1	214	120	135	11.7415
eeeeennnnneeeee	chr2:216256353-216256638(-)$1	285	145	160	11.7415
!ddddnnnnndddd2	chr7:933229-933500(+)$1	271	6	21	9.9998
cccccnnnnnccc]c	chr16:29818696-29818966(+)$1	270	27	42	9.7079
!!cccnnnnnccc66	chr1:230839955-230840180(-)$1	225	58	73	8.9701
fddddnnnnndddd]	chr12:49666592-49666876(+)$1	284	88	103	10.0091
eeeeeooooooeeee	chrM:9398-9641(+)$1	243	54	69	7.1998
eeeeeooooooeeee	chr4:74270005-74270214(+)$1	209	121	136	7.1998
gggggnnnnnggggg	chr16:89367078-89367334(-)$1	256	170	185	9.9859
#ddddnnnnnddddh	chr16:70428840-70429072(-)$1	232	101	116	9.8381
hhcccnnnnnccccc	chr17:7154514-7154776(-)$1	262	153	168	9.4577
addddnnnnndddd]	chr21:45941872-45942121(+)$1	249	151	166	10.0774
eeeeennnnneeeee	chrM:15026-15241(+)$1	215	178	193	11.7415
eeeeennnnneeeee	chr15:41786026-41786293(+)$1	267	139	154	11.7415
cddddnnnnndddd]	chr1:2125381-2125676(-)$1	295	99	114	10.0644
eeeeeooooooeeee	chrM:14362-14573(-)$1	211	13	28	7.1998

#otherMatches

#Seq PSSM
GAUGACAAGUUCAUU	chr4:74318075-74318353(+)$1	278	195	210	11.7415
GCGGUAAGUCGCUGC	chr3:133467252-133467533(+)$1	281	173	188	11.7415
UUGCUAAAGAGGCCA	chr3:186336255-186336509(+)$1	254	121	136	10.5234
CUGCCGCCGGGGCCA	chr6:170893553-170893810(-)$1	257	145	160	9.4794
CCGAGGACGACUCGG	chr19:17355915-17356262(-)$1	347	315	330	9.9859
GGCGGAGGAGCUGCC	chr5:154135506-154135781(+)$1	275	114	129	9.9859
UCCCAUACAUUGGGA	chrM:15085-15306(+)$1	221	119	134	11.7415
CCCGGAGCCCCUGAG	chr19:47249399-47249656(-)$1	257	145	160	9.6496
CCUAUCAUCUGUAGG	chrM:7153-7375(+)$1	222	106	121	11.7415
UGAUUUCCCUGACCU	chr2:21228768-21229014(-)$1	246	107	122	8.6398
AUCCCAAGAAGGGUU	chr19:50985390-50985643(+)$1	253	203	218	9.8952
AAAGUAUUUAGCUGA	chrM:6827-7032(+)$1	205	31	46	9.7818
CUCUUCACCAAAGAG	chrM:3296-3548(+)$1	252	173	188	11.7415
GAGCCAGGUCGGCUC	chr1:229694147-229694416(-)$1	269	71	86	11.7415
GCUGUUCAUUAUAGC	chrM:10557-10775(+)$1	218	29	44	11.7415
AUCGGUGCCCCCGAU	chrM:6160-6368(+)$1	208	2	17	11.7415
CCGUGAGGAGCACGA	chr3:52567610-52567866(-)$1	256	5	20	10.2431
CGGGGGGCAGUCCCG	chr19:2015513-2015791(-)$1	278	153	168	11.7415
GGGCCGAGAGGGCCA	chr18:12376923-12377176(-)$1	253	69	84	10.0644
AAGAAUCUUUUUCUG	chr2:216272966-216273193(-)$1	227	198	213	10.0435
GAGGCCCGGUGCCUC	chr20:62371657-62371968(+)$1	311	235	250	11.7415
AGACGCGUCCCGCUU	chr19:2270408-2270710(+)$1	302	173	188	9.7384
UCCCAUACAUUGGGA	chrM:15017-15226(+)$1	209	187	202	11.7415
AAAGUAUUUAGCUGA	chrM:6832-7052(+)$1	220	26	41	9.7818
UAGUAGUGGUUACUG	chrM:14191-14399(-)$1	208	179	194	10.1075
GCUGUUCAUUAUAGC	chrM:10575-10780(+)$1	205	11	26	11.7415
CGGGGGUAUACUACG	chrM:8094-8317(+)$1	223	57	72	9.4500
UCCCAUACAUUGGGA	chrM:15064-15278(+)$1	214	140	155	11.7415
CGGAGGAAGGCGUCG	chr5:154135174-154135469(+)$1	295	48	63	9.3320
UGCACGCCUGGUGCA	chr12:9245960-9246185(-)$1	225	35	50	9.9859
AGACUAUGUGAGUCu	chr4:74283234-74283480(+)$1	246	145	160	9.9859
AGAUGAUCAACGUUU	chr7:155090082-155090329(+)$1	247	19	34	9.9859
CUGCUGAUAAAGCUG	chr4:74275052-74275304(+)$1	252	120	135	9.2155
CCCACGGUGAGCUGG	chr19:14552003-14552274(+)$1	271	246	261	9.5936
AUCGGUGCCCCCGAU	chrM:6145-6349(+)$1	204	17	32	11.7415
GUGGAACUACUCCAC	chr19:6697304-6697566(-)$1	262	5	20	11.7415
UAGUAGUGGUUACUG	chrM:14157-14378(-)$1	221	158	173	10.1075
UCCGACUGUCUCGGA	chr1:2126017-2126311(-)$1	294	2	17	11.7415
AUCGGUGCCCCCGAU	chrM:6155-6360(+)$1	205	7	22	11.7415
CCUAUCAUCUGUAGG	chrM:7139-7353(+)$1	214	120	135	11.7415
GACACCAUGCGUGUC	chr2:216256353-216256638(-)$1	285	145	160	11.7415
GGCGCGGUGUGUGCA	chr7:933229-933500(+)$1	271	6	21	9.9998
GAGGCACGAAGCCAU	chr16:29818696-29818966(+)$1	270	27	42	9.7079
GUGGCCUGGAGCCUU	chr1:230839955-230840180(-)$1	225	58	73	8.9701
AUCCAGUUUGUGGAU	chr12:49666592-49666876(+)$1	284	88	103	10.0091
GAUAAUCCUAUUUAU	chrM:9398-9641(+)$1	243	54	69	7.1998
AGAAAUCCAUUUUUC	chr4:74270005-74270214(+)$1	209	121	136	7.1998
GCUGGUUCCUUCAGC	chr16:89367078-89367334(-)$1	256	170	185	9.9859
CCGGCGCUGUGCCGU	chr16:70428840-70429072(-)$1	232	101	116	9.8381
UCAUCGGGAUGAUGC	chr17:7154514-7154776(-)$1	262	153	168	9.4577
GGGAGGCAGAUUCCA	chr21:45941872-45942121(+)$1	249	151	166	10.0774
UCCCAUACAUUGGGA	chrM:15026-15241(+)$1	215	178	193	11.7415
ggggcgcgaggcccu	chr15:41786026-41786293(+)$1	267	139	154	11.7415
CCCAGGCCUUCUGGC	chr1:2125381-2125676(-)$1	295	99	114	10.0644
GGGUGUGUUAUUAUU	chrM:14362-14573(-)$1	211	13	28	7.1998

#DB
(((((.....)))))	chr4:74318075-74318353(+)$1	1	195	210	11.7415
(((((.....)))))	chr3:133467252-133467533(+)$1	1	173	188	11.7415
..(((.....)))))	chr3:186336255-186336509(+)$1	1	121	136	10.5234
(((((.....)))..	chr6:170893553-170893810(-)$1	1	145	160	9.4794
(((((.....)))))	chr19:17355915-17356262(-)$1	1	315	330	9.9859
(((((.....)))))	chr5:154135506-154135781(+)$1	1	114	129	9.9859
(((((.....)))))	chrM:15085-15306(+)$1	1	119	134	11.7415
(.(((.....))).)	chr19:47249399-47249656(-)$1	1	145	160	9.6496
(((((.....)))))	chrM:7153-7375(+)$1	1	106	121	11.7415
.(.((.....)).).	chr2:21228768-21229014(-)$1	1	107	122	8.6398
..(((.....)))..	chr19:50985390-50985643(+)$1	1	203	218	9.8952
..(((.....)))..	chrM:6827-7032(+)$1	1	31	46	9.7818
(((((.....)))))	chrM:3296-3548(+)$1	1	173	188	11.7415
(((((.....)))))	chr1:229694147-229694416(-)$1	1	71	86	11.7415
(((((.....)))))	chrM:10557-10775(+)$1	1	29	44	11.7415
(((((.....)))))	chrM:6160-6368(+)$1	1	2	17	11.7415
.((((.....)))).	chr3:52567610-52567866(-)$1	1	5	20	10.2431
(((((.....)))))	chr19:2015513-2015791(-)$1	1	153	168	11.7415
(((((.....)))).	chr18:12376923-12377176(-)$1	1	69	84	10.0644
.((((.....)))).	chr2:216272966-216273193(-)$1	1	198	213	10.0435
(((((.....)))))	chr20:62371657-62371968(+)$1	1	235	250	11.7415
((.((.....)))))	chr19:2270408-2270710(+)$1	1	173	188	9.7384
(((((.....)))))	chrM:15017-15226(+)$1	1	187	202	11.7415
..(((.....)))..	chrM:6832-7052(+)$1	1	26	41	9.7818
(((((.....)))))	chrM:14191-14399(-)$1	1	179	194	10.1075
(((((.....)))))	chrM:10575-10780(+)$1	1	11	26	11.7415
((.((.....)).))	chrM:8094-8317(+)$1	1	57	72	9.4500
(((((.....)))))	chrM:15064-15278(+)$1	1	140	155	11.7415
(((.(.....).)))	chr5:154135174-154135469(+)$1	1	48	63	9.3320
(((((.....)))))	chr12:9245960-9246185(-)$1	1	35	50	9.9859
(((((.....)))))	chr4:74283234-74283480(+)$1	1	145	160	9.9859
(((((.....)))))	chr7:155090082-155090329(+)$1	1	19	34	9.9859
(.(((.....))).)	chr4:74275052-74275304(+)$1	1	120	135	9.2155
(((((.....).)))	chr19:14552003-14552274(+)$1	1	246	261	9.5936
(((((.....)))))	chrM:6145-6349(+)$1	1	17	32	11.7415
(((((.....)))))	chr19:6697304-6697566(-)$1	1	5	20	11.7415
(((((.....)))))	chrM:14157-14378(-)$1	1	158	173	10.1075
(((((.....)))))	chr1:2126017-2126311(-)$1	1	2	17	11.7415
(((((.....)))))	chrM:6155-6360(+)$1	1	7	22	11.7415
(((((.....)))))	chrM:7139-7353(+)$1	1	120	135	11.7415
(((((.....)))))	chr2:216256353-216256638(-)$1	1	145	160	11.7415
.((((.....)))).	chr7:933229-933500(+)$1	1	6	21	9.9998
(((((.....))).)	chr16:29818696-29818966(+)$1	1	27	42	9.7079
..(((.....)))..	chr1:230839955-230840180(-)$1	1	58	73	8.9701
(((((.....)))).	chr12:49666592-49666876(+)$1	1	88	103	10.0091
(((((......))))	chrM:9398-9641(+)$1	1	54	69	7.1998
(((((......))))	chr4:74270005-74270214(+)$1	1	121	136	7.1998
(((((.....)))))	chr16:89367078-89367334(-)$1	1	170	185	9.9859
.((((.....)))))	chr16:70428840-70429072(-)$1	1	101	116	9.8381
))(((.....)))((	chr17:7154514-7154776(-)$1	1	153	168	9.4577
(((((.....)))).	chr21:45941872-45942121(+)$1	1	151	166	10.0774
(((((.....)))))	chrM:15026-15241(+)$1	1	178	193	11.7415
(((((.....)))))	chr15:41786026-41786293(+)$1	1	139	154	11.7415
(((((.....)))).	chr1:2125381-2125676(-)$1	1	99	114	10.0644
(((((......))))	chrM:14362-14573(-)$1	1	13	28	7.1998

#PSSM
e : 0.47	g : 0.10	! : 0.07	c : 0.07	# : 0.05	d : 0.03	h : 0.03	" : 0.03	= : 0.03	[ : 0.01	b : 0.01	f : 0.01	a : 0.01	
e : 0.47	d : 0.18	g : 0.10	! : 0.03	[ : 0.03	# : 0.03	= : 0.03	c : 0.03	a : 0.01	" : 0.01	h : 0.01	
e : 0.43	c : 0.20	d : 0.16	g : 0.10	[ : 0.05	= : 0.03	
e : 0.43	c : 0.18	d : 0.16	g : 0.10	b : 0.05	= : 0.03	[ : 0.01	
e : 0.43	c : 0.18	d : 0.14	g : 0.10	b : 0.05	= : 0.03	a : 0.03	
n : 0.94	o : 0.05	
n : 0.94	o : 0.05	
n : 0.94	o : 0.05	
n : 0.94	o : 0.05	
n : 0.94	o : 0.05	
e : 0.38	c : 0.18	d : 0.14	g : 0.10	b : 0.05	o : 0.05	= : 0.03	a : 0.03	
e : 0.43	c : 0.18	d : 0.14	g : 0.10	b : 0.05	= : 0.03	] : 0.03	
e : 0.45	c : 0.20	d : 0.16	g : 0.10	] : 0.03	= : 0.03	
e : 0.49	d : 0.16	g : 0.10	] : 0.05	4 : 0.03	= : 0.03	c : 0.03	2 : 0.01	a : 0.01	3 : 0.01	6 : 0.01	
e : 0.49	g : 0.10	] : 0.10	4 : 0.05	c : 0.05	2 : 0.03	h : 0.03	= : 0.03	3 : 0.01	b : 0.01	d : 0.01	6 : 0.01	

#score	571.8606925728203
#seq	55
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_transcript_m1_run1.txt

#BEAR
ffffffvvvvvvvvvvvvvfffff	chr2:170591968-170592280(+)$1	312	117	141	22.1792
gggggggvvvvvvvvvvvvvgggg	chr17:41242860-41243098(-)$1	238	31	55	24.1836
iibb[bbvvvvvvvvvvvvvbb]b	chr16:8997093-8997317(-)$1	224	37	61	21.8621
c!!ddddtttttttttttdddd22	chr10:93722194-93722403(+)$1	209	123	147	22.6665
:eeeeevvvvvvvvvvvvveeeee	chr4:119661761-119662062(-)$1	301	0	24	22.8348
hhhbb[auuuuuuuuuuuua]bb]	chr5:179149780-179149997(+)$1	217	146	170	22.3313
eee[ddddtttttttttttdddd]	chr10:65140011-65140264(-)$1	253	76	100	22.7133
gggggggtttttttttttgggggg	chr20:46266380-46266606(+)$1	226	13	37	23.0441
hhhddddvvvvvvvvvvvvvdddd	chr5:108294829-108295162(+)$1	333	38	62	23.3364
cc:eeeeettttttttttteeeee	chr10:60996143-60996462(+)$1	319	116	140	21.9364
gggggggtttttttttttgggggg	chr4:38045907-38046169(+)$1	262	17	41	23.0441
bb[dddduuuuuuuuuuuudddd]	chr9:107584800-107585025(-)$1	225	195	219	23.4561
c[ddddvvvvvvvvvvvvvdddd]	chr8:104064864-104065150(+)$1	286	180	204	23.5884
fff[cccvvvvvvvvvvvvvccc]	chr8:87500708-87500970(-)$1	262	169	193	23.7237
eeeyyyyyyyyyyyyyyyyeeeee	chr5:36995696-36995942(+)$1	246	74	98	19.7775
iiiiiiiuuuuuuuuuuuuiiiii	chr3:50145470-50145677(+)$1	207	15	39	24.1683
::eeeeettttttttttteeeeeh	chr8:17812983-17813234(+)$1	251	180	204	21.2212
gggdddduuuuuuuuuuuudddd8	chr13:20593585-20593835(+)$1	250	10	34	23.3118
feeeeeavvvvvvvvvvvvva]ee	chr14:103429300-103429532(-)$1	232	49	73	23.8399
ggggggguuuuuuuuuuuuggggg	chr6:30546156-30546402(+)$1	246	136	160	24.1298
iiiiiwwwwwwwwwwwwwwiiiii	chr6:114270289-114270524(-)$1	235	35	59	22.0954
e!!dddduuuuuuuuuuuudddd]	chr5:131924277-131924488(+)$1	211	13	37	24.0496
gggggggtttttttttttgggggg	chr2:160231109-160231365(-)$1	256	198	222	23.0441
:ccc[bbuuuuuuuuuuuubb]cc	chr5:78586977-78587232(+)$1	255	108	132	21.5797
eeeecccuuuuuuuuuuuuccc]e	chr10:7791304-7791527(+)$1	223	174	198	23.9630
d[eeeeeuuuuuuuuuuuueeeee	chr2:63169927-63170131(+)$1	204	171	195	24.2923
iiiiiiivvvvvvvvvvvvviiii	chr2:190670288-190670579(+)$1	291	48	72	24.1788
iii[cccuuuuuuuuuuuuccc]i	chr11:65267627-65267843(+)$1	216	54	78	24.2627
c[eeeeeuuuuuuuuuuuueeeee	chr21:17199255-17199537(+)$1	282	119	143	24.4387
iiii[bbvvvvvvvvvvvvvbb]i	chrX:18954158-18954368(-)$1	210	97	121	23.0860
a!!eeeeettttttttttteeeee	chrX:128622939-128623152(-)$1	213	89	113	23.2509
ccc[ccctttttttttttccc]cc	chr3:123457652-123457949(-)$1	297	205	229	22.9412
gggggggtttttttttttgggggg	chr13:31232411-31232640(+)$1	229	123	147	23.0441
[a[dddduuuuuuuuuuuudddd]	chr2:669499-669754(-)$1	255	86	110	23.9340
hheeeeewwwwwwwwwwwwwweee	chr18:48573365-48573626(+)$1	261	64	88	22.3201
hhhhhhhvvvvvvvvvvvvvhhhh	chr2:38795248-38795501(-)$1	253	204	228	22.6572
ccc[cccvvvvvvvvvvvvvcccc	chr5:102465259-102465514(+)$1	255	15	39	23.8005
eeeeewwwwwwwwwwwwwweeeee	chr1:19491374-19491584(-)$1	210	112	136	21.9390
gggggggtttttttttttgggggg	chr6:136582015-136582242(-)$1	227	127	151	23.0441
d[eeeeeuuuuuuuuuuuueeeee	chr14:58831393-58831694(+)$1	301	203	227	24.2923
dcccccctttttttttttccc]cc	chr14:51378598-51378842(-)$1	244	174	198	22.6609
iiiiiiivvvvvvvvvvvvviiii	chr1:185270468-185270755(-)$1	287	34	58	24.1788
c"""ddddtttttttttttdddd]	chr7:135106930-135107212(-)$1	282	2	26	22.6070
cc[dddduuuuuuuuuuuuddddc	chr3:194180586-194180800(-)$1	214	48	72	23.7013
""eeeeevvvvvvvvvvvvveeee	chr12:112688004-112688243(-)$1	239	147	171	24.2039
""fffffftttttttttttfffff	chr1:38048275-38048577(-)$1	302	219	243	21.5166
gggggggtttttttttttgggggg	chr2:55571403-55571638(-)$1	235	65	89	23.0441
eeedddduuuuuuuuuuuudddd]	chr13:21189860-21190116(+)$1	256	150	174	23.7775
b!!eeeeettttttttttteeeee	chr1:39760617-39760872(+)$1	255	45	69	23.0847
i!!dddduuuuuuuuuuuudddd4	chr10:121336909-121337131(-)$1	222	35	59	23.9497
::ddddwwwwwwwwwwwwwwdddd	chr1:39823164-39823449(+)$1	285	11	35	19.9671
d[eeeeeyyyyyyyyyyyyyyyye	chr10:103565705-103565932(-)$1	227	38	62	20.4852
gggg[ccctttttttttttccc]g	chr3:133327624-133327881(-)$1	257	164	188	23.2021
!bb[cccuuuuuuuuuuuuccc22	chr6:56489224-56489473(-)$1	249	126	150	23.0958
gggggggvvvvvvvvvvvvvgggg	chr11:108196817-108197052(+)$1	235	161	185	24.1836
eee[cccvvvvvvvvvvvvvccc]	chr2:188348840-188349043(-)$1	203	8	32	24.0076
!!eeeeeuuuuuuuuuuuueeeee	chr8:11687659-11687902(+)$1	243	72	96	24.4488
b[eeeeeyyyyyyyyyyyyyyyye	chr5:72312978-72313232(+)$1	254	60	84	20.4054
d[eeeeettttttttttteeeee]	chr1:52991185-52991513(-)$1	328	57	81	23.4595
ddddcccuuuuuuuuuuuuccc22	chr10:14938769-14939114(+)$1	345	163	187	23.0921
eeee!!bbtttttttttttbb22e	chr13:113770988-113771240(+)$1	252	54	78	21.3296
ffffffvvvvvvvvvvvvvfffff	chr3:25805664-25805903(-)$1	239	100	124	22.1792
::eeeeeuuuuuuuuuuuueeeee	chr6:76405488-76405735(+)$1	247	185	209	22.3034
hhhhhhhvvvvvvvvvvvvvhhhh	chr19:53994558-53994821(+)$1	263	179	203	22.6572

#otherMatches

#Seq PSSM
UCCAGAAAGAAUCUCAGUGUUUGG	chr2:170591968-170592280(+)$1	312	117	141	22.1792
CUGUUUUUGUUAUUUAAGGUGAAG	chr17:41242860-41243098(-)$1	238	31	55	24.1836
UGCUUUCAUACAUAUUUUCAGAUA	chr16:8997093-8997317(-)$1	224	37	61	21.8621
UAAAGUUUUAACUAGAAUAAUUGA	chr10:93722194-93722403(+)$1	209	123	147	22.6665
CUUGAAUAAUUGUUUCUUUUUCAA	chr4:119661761-119662062(-)$1	301	0	24	22.8348
UGACAACUUUAUCAUUUGUGCUGA	chr5:179149780-179149997(+)$1	217	146	170	22.3313
UAUGAAGAUUUUUCAACUUUCUUG	chr10:65140011-65140264(-)$1	253	76	100	22.7133
AUCUGGAGACUUGGAUAAUCUAGA	chr20:46266380-46266606(+)$1	226	13	37	23.0441
UGUAGAUUUUCUAAAGCAAUGUCU	chr5:108294829-108295162(+)$1	333	38	62	23.3364
GGUGGCAAAAGCUGUUCCCUUGCC	chr10:60996143-60996462(+)$1	319	116	140	21.9364
UUCCUUUAAGAAGCAGAGAAGGGA	chr4:38045907-38046169(+)$1	262	17	41	23.0441
GGGCCAGAUCACCUCCUUCCUGGG	chr9:107584800-107585025(-)$1	225	195	219	23.4561
GAAUGCGUAAGCAGAUCAAGUAUA	chr8:104064864-104065150(+)$1	286	180	204	23.5884
GCUAACCCAAUACAAGGAAAGGUA	chr8:87500708-87500970(-)$1	262	169	193	23.7237
GCAGAAAUUGAGUCCACCAUGCCA	chr5:36995696-36995942(+)$1	246	74	98	19.7775
AUUUUGAUGUUUUGUAGUCUCAAA	chr3:50145470-50145677(+)$1	207	15	39	24.1683
UAAAACAUUUAUAAUCAUUGUUUA	chr8:17812983-17813234(+)$1	251	180	204	21.2212
AGAAGCAACUUUUACAUAAUGCUU	chr13:20593585-20593835(+)$1	250	10	34	23.3118
GGAUUCCGAAGCCAAAAACAGAGA	chr14:103429300-103429532(-)$1	232	49	73	23.8399
AGGAGGAGGAAGAAAAACAUCCUC	chr6:30546156-30546402(+)$1	246	136	160	24.1298
GUAAACAAAUGCCAAACUUUUUAU	chr6:114270289-114270524(-)$1	235	35	59	22.0954
auuauuuuuuauaacucgugaauc	chr5:131924277-131924488(+)$1	211	13	37	24.0496
ACAGUGUUUUAGAAAUCUACAUUG	chr2:160231109-160231365(-)$1	256	198	222	23.0441
AUGCUUGGAACAGCGGAAACAUGC	chr5:78586977-78587232(+)$1	255	108	132	21.5797
AAUGAGCUUUUAGGAUUUUGUUGC	chr10:7791304-7791527(+)$1	223	174	198	23.9630
UAAUUUCUUAGCACAUCCUGAAAU	chr2:63169927-63170131(+)$1	204	171	195	24.2923
UAUCUAAAGUGUUAGUUUUAUUAG	chr2:190670288-190670579(+)$1	291	48	72	24.1788
UUUGGAAGAGUUAGAAGAAUUUGG	chr11:65267627-65267843(+)$1	216	54	78	24.2627
UCAGUAAUACACAAACCAUUUACU	chr21:17199255-17199537(+)$1	282	119	143	24.4387
CAGGUCCAAGAAUACCGAGAGGCC	chrX:18954158-18954368(-)$1	210	97	121	23.0860
GGAAGACUCAUUGACCAACAGUCU	chrX:128622939-128623152(-)$1	213	89	113	23.2509
GGUGAGGUUUCUGUCUGCCCUGAC	chr3:123457652-123457949(-)$1	297	205	229	22.9412
GUGUUUCAGCUCAUAAUAGAAACA	chr13:31232411-31232640(+)$1	229	123	147	23.0441
GGGUAUGGAAGACUUUGAAUGUGA	chr2:669499-669754(-)$1	255	86	110	23.9340
CUAUUACGAAUACACCAACAAGUA	chr18:48573365-48573626(+)$1	261	64	88	22.3201
UUACCAUCACAGAAACAUUCAUGG	chr2:38795248-38795501(-)$1	253	204	228	22.6572
UACAUCAAAUAAAAUAAAAAUGAG	chr5:102465259-102465514(+)$1	255	15	39	23.8005
GAGCCUGUUGCAUCUCUGUGGCUC	chr1:19491374-19491584(-)$1	210	112	136	21.9390
UUUUAAGUCUUCAAAUAUCUUGAG	chr6:136582015-136582242(-)$1	227	127	151	23.0441
UGAUAGUCCAGCUGAAGAAACUGU	chr14:58831393-58831694(+)$1	301	203	227	24.2923
UGAGGGCUCUAAUCUCUUGCCAUU	chr14:51378598-51378842(-)$1	244	174	198	22.6609
UCUGUAGCUACCUUUUGAUUUUGC	chr1:185270468-185270755(-)$1	287	34	58	24.1788
GAGAAUGUAACAGAUAACCACAUA	chr7:135106930-135107212(-)$1	282	2	26	22.6070
GGCAGUUUUCUAUAAAAUUGACUC	chr3:194180586-194180800(-)$1	214	48	72	23.7013
GACAGAGAAUUCACCUACCCCUCU	chr12:112688004-112688243(-)$1	239	147	171	24.2039
AGAAUAGACUAUUAAGACAUCUGU	chr1:38048275-38048577(-)$1	302	219	243	21.5166
UUCUGAUAAAUUACAUGAAUUAGA	chr2:55571403-55571638(-)$1	235	65	89	23.0441
UAUGAUUGGUAAGAGAGAAAGUCU	chr13:21189860-21190116(+)$1	256	150	174	23.7775
AUCCGCUCCCCACUGCCAAGAGUG	chr1:39760617-39760872(+)$1	255	45	69	23.0847
UUUCAUGAUACACAUCAGCCAUGU	chr10:121336909-121337131(-)$1	222	35	59	23.9497
GGAGAGCUAAAGGAACAAUACUCU	chr1:39823164-39823449(+)$1	285	11	35	19.9671
GUGGCACUUUCUGUUAUCCAAAUG	chr10:103565705-103565932(-)$1	227	38	62	20.4852
GGUUUGUAUCAAAUUAAUUUACUG	chr3:133327624-133327881(-)$1	257	164	188	23.2021
AGAGGCUGGAAGAGGAGGAGGUAA	chr6:56489224-56489473(-)$1	249	126	150	23.0958
GUGUUUUACUGUUAUUUAAAAAAA	chr11:108196817-108197052(+)$1	235	161	185	24.1836
AGUCUGCUUUUUUAACUGUUGUAC	chr2:188348840-188349043(-)$1	203	8	32	24.0076
UUAAUCUUCUUAUCUGUCUAGGUU	chr8:11687659-11687902(+)$1	243	72	96	24.4488
GUCCAUGAAGAAUUUAUAAAUAAC	chr5:72312978-72313232(+)$1	254	60	84	20.4054
UACUGUUGAAAGACAUGAGACAGA	chr1:52991185-52991513(-)$1	328	57	81	23.4595
UGCUUCAGCAAUUCUCUAAUGACA	chr10:14938769-14939114(+)$1	345	163	187	23.0921
CAAAUCUCUGCAUCUUUCUGACUU	chr13:113770988-113771240(+)$1	252	54	78	21.3296
GGGAGAAACACAUCUCAUCUUUCC	chr3:25805664-25805903(-)$1	239	100	124	22.1792
AGUCACUCACAUUUAACUAAGUGA	chr6:76405488-76405735(+)$1	247	185	209	22.3034
AAGGUUUUUAAUAAAAAGGCAAAC	chr19:53994558-53994821(+)$1	263	179	203	22.6572

#DB
((((((.............)))))	chr2:170591968-170592280(+)$1	1	117	141	22.1792
(((((((.............))))	chr17:41242860-41243098(-)$1	1	31	55	24.1836
((((.((.............)).)	chr16:8997093-8997317(-)$1	1	37	61	21.8621
(..((((...........))))..	chr10:93722194-93722403(+)$1	1	123	147	22.6665
.(((((.............)))))	chr4:119661761-119662062(-)$1	1	0	24	22.8348
(((((.(............).)).	chr5:179149780-179149997(+)$1	1	146	170	22.3313
(((.((((...........)))).	chr10:65140011-65140264(-)$1	1	76	100	22.7133
(((((((...........))))))	chr20:46266380-46266606(+)$1	1	13	37	23.0441
(((((((.............))))	chr5:108294829-108295162(+)$1	1	38	62	23.3364
)).(((((...........)))))	chr10:60996143-60996462(+)$1	1	116	140	21.9364
(((((((...........))))))	chr4:38045907-38046169(+)$1	1	17	41	23.0441
((.((((............)))).	chr9:107584800-107585025(-)$1	1	195	219	23.4561
(.((((.............)))).	chr8:104064864-104065150(+)$1	1	180	204	23.5884
(((.(((.............))).	chr8:87500708-87500970(-)$1	1	169	193	23.7237
(((................)))))	chr5:36995696-36995942(+)$1	1	74	98	19.7775
(((((((............)))))	chr3:50145470-50145677(+)$1	1	15	39	24.1683
..(((((...........)))))(	chr8:17812983-17813234(+)$1	1	180	204	21.2212
(((((((............)))).	chr13:20593585-20593835(+)$1	1	10	34	23.3118
)((((((.............).))	chr14:103429300-103429532(-)$1	1	49	73	23.8399
(((((((............)))))	chr6:30546156-30546402(+)$1	1	136	160	24.1298
(((((..............)))))	chr6:114270289-114270524(-)$1	1	35	59	22.0954
(..((((............)))).	chr5:131924277-131924488(+)$1	1	13	37	24.0496
(((((((...........))))))	chr2:160231109-160231365(-)$1	1	198	222	23.0441
.(((.((............)).))	chr5:78586977-78587232(+)$1	1	108	132	21.5797
(((((((............))).)	chr10:7791304-7791527(+)$1	1	174	198	23.9630
(.(((((............)))))	chr2:63169927-63170131(+)$1	1	171	195	24.2923
(((((((.............))))	chr2:190670288-190670579(+)$1	1	48	72	24.1788
(((.(((............))).)	chr11:65267627-65267843(+)$1	1	54	78	24.2627
(.(((((............)))))	chr21:17199255-17199537(+)$1	1	119	143	24.4387
((((.((.............)).)	chrX:18954158-18954368(-)$1	1	97	121	23.0860
(..(((((...........)))))	chrX:128622939-128623152(-)$1	1	89	113	23.2509
(((.(((...........))).))	chr3:123457652-123457949(-)$1	1	205	229	22.9412
(((((((...........))))))	chr13:31232411-31232640(+)$1	1	123	147	23.0441
.(.((((............)))).	chr2:669499-669754(-)$1	1	86	110	23.9340
))(((((..............)))	chr18:48573365-48573626(+)$1	1	64	88	22.3201
(((((((.............))))	chr2:38795248-38795501(-)$1	1	204	228	22.6572
(((.(((.............))))	chr5:102465259-102465514(+)$1	1	15	39	23.8005
(((((..............)))))	chr1:19491374-19491584(-)$1	1	112	136	21.9390
(((((((...........))))))	chr6:136582015-136582242(-)$1	1	127	151	23.0441
(.(((((............)))))	chr14:58831393-58831694(+)$1	1	203	227	24.2923
)((((((...........))).))	chr14:51378598-51378842(-)$1	1	174	198	22.6609
(((((((.............))))	chr1:185270468-185270755(-)$1	1	34	58	24.1788
(...((((...........)))).	chr7:135106930-135107212(-)$1	1	2	26	22.6070
((.((((............)))))	chr3:194180586-194180800(-)$1	1	48	72	23.7013
..(((((.............))))	chr12:112688004-112688243(-)$1	1	147	171	24.2039
..((((((...........)))))	chr1:38048275-38048577(-)$1	1	219	243	21.5166
(((((((...........))))))	chr2:55571403-55571638(-)$1	1	65	89	23.0441
(((((((............)))).	chr13:21189860-21190116(+)$1	1	150	174	23.7775
(..(((((...........)))))	chr1:39760617-39760872(+)$1	1	45	69	23.0847
(..((((............)))).	chr10:121336909-121337131(-)$1	1	35	59	23.9497
..((((..............))))	chr1:39823164-39823449(+)$1	1	11	35	19.9671
(.(((((................)	chr10:103565705-103565932(-)$1	1	38	62	20.4852
((((.(((...........))).)	chr3:133327624-133327881(-)$1	1	164	188	23.2021
.((.(((............)))..	chr6:56489224-56489473(-)$1	1	126	150	23.0958
(((((((.............))))	chr11:108196817-108197052(+)$1	1	161	185	24.1836
(((.(((.............))).	chr2:188348840-188349043(-)$1	1	8	32	24.0076
..(((((............)))))	chr8:11687659-11687902(+)$1	1	72	96	24.4488
(.(((((................)	chr5:72312978-72313232(+)$1	1	60	84	20.4054
(.(((((...........))))).	chr1:52991185-52991513(-)$1	1	57	81	23.4595
(((((((............)))..	chr10:14938769-14939114(+)$1	1	163	187	23.0921
((((..((...........))..)	chr13:113770988-113771240(+)$1	1	54	78	21.3296
((((((.............)))))	chr3:25805664-25805903(-)$1	1	100	124	22.1792
..(((((............)))))	chr6:76405488-76405735(+)$1	1	185	209	22.3034
(((((((.............))))	chr19:53994558-53994821(+)$1	1	179	203	22.6572

#PSSM
g : 0.17	i : 0.12	c : 0.12	e : 0.12	d : 0.09	: : 0.07	h : 0.07	f : 0.06	b : 0.04	" : 0.03	! : 0.03	a : 0.01	[ : 0.01	
g : 0.17	e : 0.14	i : 0.10	[ : 0.10	! : 0.09	c : 0.09	h : 0.07	f : 0.04	: : 0.04	" : 0.04	b : 0.03	a : 0.01	d : 0.01	
e : 0.31	g : 0.17	i : 0.09	! : 0.07	f : 0.06	h : 0.06	c : 0.06	[ : 0.04	d : 0.04	b : 0.03	: : 0.01	" : 0.01	
e : 0.29	d : 0.18	g : 0.15	[ : 0.10	i : 0.07	f : 0.04	b : 0.03	c : 0.03	h : 0.03	y : 0.01	" : 0.01	
e : 0.26	d : 0.20	g : 0.14	c : 0.14	[ : 0.06	i : 0.06	f : 0.04	h : 0.03	b : 0.01	y : 0.01	! : 0.01	
e : 0.25	d : 0.20	c : 0.15	g : 0.14	f : 0.04	b : 0.04	i : 0.04	w : 0.03	h : 0.03	[ : 0.01	y : 0.01	! : 0.01	
e : 0.21	d : 0.17	c : 0.15	g : 0.14	v : 0.06	b : 0.06	i : 0.04	w : 0.04	a : 0.03	h : 0.03	y : 0.01	f : 0.01	
u : 0.31	v : 0.28	t : 0.17	w : 0.06	e : 0.04	y : 0.04	d : 0.03	f : 0.01	c : 0.01	b : 0.01	
u : 0.31	t : 0.29	v : 0.28	w : 0.06	y : 0.04	
u : 0.31	t : 0.29	v : 0.28	w : 0.06	y : 0.04	
u : 0.31	t : 0.29	v : 0.28	w : 0.06	y : 0.04	
u : 0.31	t : 0.29	v : 0.28	w : 0.06	y : 0.04	
u : 0.31	t : 0.29	v : 0.28	w : 0.06	y : 0.04	
u : 0.31	t : 0.29	v : 0.28	w : 0.06	y : 0.04	
u : 0.31	t : 0.29	v : 0.28	w : 0.06	y : 0.04	
u : 0.31	t : 0.29	v : 0.28	w : 0.06	y : 0.04	
u : 0.31	t : 0.29	v : 0.28	w : 0.06	y : 0.04	
u : 0.31	t : 0.29	v : 0.28	w : 0.06	y : 0.04	
u : 0.31	v : 0.28	t : 0.12	g : 0.09	w : 0.06	y : 0.04	e : 0.03	c : 0.03	d : 0.01	
v : 0.21	e : 0.20	d : 0.17	g : 0.10	c : 0.10	f : 0.04	i : 0.03	b : 0.03	w : 0.03	y : 0.03	a : 0.01	
e : 0.21	d : 0.20	c : 0.15	g : 0.14	b : 0.06	i : 0.06	f : 0.04	h : 0.03	y : 0.03	] : 0.01	a : 0.01	w : 0.01	
e : 0.23	d : 0.20	g : 0.14	c : 0.12	i : 0.06	] : 0.06	f : 0.04	b : 0.04	h : 0.03	y : 0.03	2 : 0.01	
e : 0.25	d : 0.18	g : 0.14	c : 0.09	] : 0.07	2 : 0.06	i : 0.06	f : 0.04	h : 0.03	y : 0.03	b : 0.01	
e : 0.28	] : 0.17	g : 0.15	i : 0.09	c : 0.07	f : 0.04	2 : 0.04	h : 0.04	d : 0.03	b : 0.01	8 : 0.01	4 : 0.01	

#score	1471.106103161246
#seq	64
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_CDS_m2_run2.txt

#BEAR
bb]===========:ggggggg!!bb$$$$$ff	chr11:637270-637539(+)$1	269	160	193	14.7951
[bbiiiiiiiii[ccc[a[dddd[bb[ddddcc	chr5:139625017-139625319(-)$1	302	119	152	15.8399
22bb]bb============dddd!!a[aooooo	chr19:11256978-11257233(-)$1	255	183	216	12.2455
============!!cccffffff[bb%%%%%%d	chr19:11256918-11257166(-)$1	248	156	189	13.7927
eeeeedddd[bb[ccc!!eeeee[a####ffff	chr7:5460707-5460975(-)$1	268	86	119	12.4594
ffff[ccc"""a[dddd[dddd!!bb[ddddqq	chr2:170606080-170606400(+)$1	320	228	261	12.8088
#iiiiiiiii"""ccc[a[bb"""bb[cccddd	chr19:2272906-2273128(+)$1	222	92	125	15.3697
:ggggggg[ccc[ccc"""eeeeebb"""bbmm	chr16:448089-448339(+)$1	250	163	196	13.6872

#otherMatches

#Seq PSSM
CUGCUCAUCGGCGCGGUGCUCGCGGGGAACUCG	chr11:637270-637539(+)$1	269	160	193	14.7951
UGAGCAGAGGGAUGGAACAGAGGGUGAGAGAGG	chr5:139625017-139625319(-)$1	302	119	152	15.8399
CUGCAGUUUCACAUCUGUGACGGGAUGGGACAA	chr19:11256978-11257233(-)$1	255	183	216	12.2455
CGUGGUAUUCGAUGACAGCUCCCAGGUACUUCA	chr19:11256918-11257166(-)$1	248	156	189	13.7927
CUCCCGCGGAGGAUGGAUGGCCGAGACUUCGGG	chr7:5460707-5460975(-)$1	268	86	119	12.4594
GGUUUGAAGUUCCUUACCUGAUAAUUGUGUCUG	chr2:170606080-170606400(+)$1	320	228	261	12.8088
GGGCUUUGAGAUUGUGAGACCGGGGCAUCCCCU	chr19:2272906-2273128(+)$1	222	92	125	15.3697
CCUGGGUCUGGAAGCGACAGGCCUUGAAACUCC	chr16:448089-448339(+)$1	250	163	196	13.6872

#DB
)).))))))))))).(((((((..((.....((	chr11:637270-637539(+)$1	1	160	193	14.7951
.(((((((((((.(((.(.((((.((.((((((	chr5:139625017-139625319(-)$1	1	119	152	15.8399
..)).))))))))))))))((((..(.(.....	chr19:11256978-11257233(-)$1	1	183	216	12.2455
((((((((((((..(((((((((.((......(	chr19:11256918-11257166(-)$1	1	156	189	13.7927
)))))((((.((.(((..(((((.(....((((	chr7:5460707-5460975(-)$1	1	86	119	12.4594
((((.(((...(.((((.((((..((.((((..	chr2:170606080-170606400(+)$1	1	228	261	12.8088
.(((((((((...(((.(.((...((.((((((	chr19:2272906-2273128(+)$1	1	92	125	15.3697
.(((((((.(((.(((...(((((((...((..	chr16:448089-448339(+)$1	1	163	196	13.6872

#PSSM
b : 0.12	[ : 0.12	2 : 0.12	= : 0.12	e : 0.12	f : 0.12	# : 0.12	: : 0.12	
b : 0.25	2 : 0.12	= : 0.12	e : 0.12	f : 0.12	i : 0.12	g : 0.12	
b : 0.25	] : 0.12	= : 0.12	e : 0.12	f : 0.12	i : 0.12	g : 0.12	
= : 0.25	i : 0.25	b : 0.12	e : 0.12	f : 0.12	g : 0.12	
= : 0.25	i : 0.25	] : 0.12	e : 0.12	[ : 0.12	g : 0.12	
= : 0.25	i : 0.25	b : 0.12	d : 0.12	c : 0.12	g : 0.12	
= : 0.25	i : 0.25	b : 0.12	d : 0.12	c : 0.12	g : 0.12	
= : 0.37	i : 0.25	d : 0.12	c : 0.12	g : 0.12	
= : 0.37	i : 0.25	d : 0.12	" : 0.12	[ : 0.12	
= : 0.37	i : 0.25	[ : 0.12	" : 0.12	c : 0.12	
= : 0.37	" : 0.25	i : 0.12	b : 0.12	c : 0.12	
= : 0.37	i : 0.12	b : 0.12	a : 0.12	" : 0.12	c : 0.12	
[ : 0.50	= : 0.25	! : 0.12	" : 0.12	
c : 0.50	= : 0.25	! : 0.12	d : 0.12	
c : 0.62	: : 0.12	= : 0.12	d : 0.12	
c : 0.62	g : 0.12	= : 0.12	d : 0.12	
[ : 0.25	g : 0.12	= : 0.12	c : 0.12	! : 0.12	d : 0.12	" : 0.12	
a : 0.25	g : 0.12	= : 0.12	f : 0.12	! : 0.12	[ : 0.12	" : 0.12	
[ : 0.25	g : 0.12	= : 0.12	f : 0.12	e : 0.12	d : 0.12	" : 0.12	
d : 0.37	e : 0.25	g : 0.12	f : 0.12	b : 0.12	
d : 0.37	e : 0.25	g : 0.12	f : 0.12	b : 0.12	
d : 0.37	e : 0.25	g : 0.12	f : 0.12	" : 0.12	
! : 0.25	d : 0.25	e : 0.25	f : 0.12	" : 0.12	
! : 0.37	[ : 0.37	" : 0.12	e : 0.12	
b : 0.75	! : 0.12	a : 0.12	
b : 0.75	a : 0.12	# : 0.12	
[ : 0.50	$ : 0.12	% : 0.12	# : 0.12	" : 0.12	
d : 0.25	$ : 0.12	a : 0.12	% : 0.12	# : 0.12	c : 0.12	" : 0.12	
d : 0.25	$ : 0.12	o : 0.12	% : 0.12	# : 0.12	c : 0.12	" : 0.12	
d : 0.25	$ : 0.12	o : 0.12	% : 0.12	f : 0.12	c : 0.12	b : 0.12	
d : 0.37	$ : 0.12	o : 0.12	% : 0.12	f : 0.12	b : 0.12	
f : 0.25	c : 0.12	o : 0.12	% : 0.12	q : 0.12	d : 0.12	m : 0.12	
f : 0.25	d : 0.25	c : 0.12	o : 0.12	q : 0.12	m : 0.12	

#score	110.99882873757497
#seq	8
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_UTR_m3_run1.txt

#BEAR
a[bb[ffffffnnnnnfffff	chr5:43290991-43291285(-)$1	294	57	78	10.0639
g!!ccc[ddddnnnnnddddc	chr8:102217355-102217630(-)$1	275	220	241	11.3605
===!!ddddbbnnnnnbb]dd	chr9:139560094-139560345(+)$1	251	163	184	13.4858
!bb!!ccc[bbnnnnnbb]cc	chr3:128211706-128211991(+)$1	285	242	263	14.6901
$$$hhhhhhhhnnnnnhhhhh	chr11:611844-612083(+)$1	239	182	203	10.2073
"ggggggg[bboooooobb]g	chr6:31698293-31698552(-)$1	259	128	149	8.6597
b####ccc[bbnnnnnbb]cc	chr18:3450121-3450389(+)$1	268	61	82	15.0025
GGGa[a[ddddnnnnndddd]	chr20:1165115-1165373(-)$1	258	60	81	10.2086
####bb[a[bbnnnnnbb]a]	chr3:128211661-128211906(+)$1	245	134	155	14.9550
ccc[bb[cccnnnnnccc]bb	chr22:19418955-19419219(-)$1	264	107	128	9.3318
fff!!ccc[bbnnnnnbb22c	chr6:32148374-32148640(+)$1	266	41	62	13.7302

#otherMatches

#Seq PSSM
CUCUGUGAGGUGCAAGACUUC	chr5:43290991-43291285(-)$1	294	57	78	10.0639
GUCAGCUGCCAGAGUGUGGCG	chr8:102217355-102217630(-)$1	275	220	241	11.3605
ccggAUCCGGCGGUGAGUgcg	chr9:139560094-139560345(+)$1	251	163	184	13.4858
AUGGAUGUGGCGGCAGGCAAU	chr3:128211706-128211991(+)$1	285	242	263	14.6901
UUCUAAUUUAUCAAAAAUGGA	chr11:611844-612083(+)$1	239	182	203	10.2073
GUGGGAUGAGUAGGACAACAU	chr6:31698293-31698552(-)$1	259	128	149	8.6597
CGAGGUGCGCCGAGCAGGAGC	chr18:3450121-3450389(+)$1	268	61	82	15.0025
CCCAGGGGCACUUugugugug	chr20:1165115-1165373(-)$1	258	60	81	10.2086
GGGAGCAGGGCGAGGUGCGCG	chr3:128211661-128211906(+)$1	245	134	155	14.9550
gcggcggccggagggcgggug	chr22:19418955-19419219(-)$1	264	107	128	9.3318
GGGCAAAGUUCCCUCUGACUC	chr6:32148374-32148640(+)$1	266	41	62	13.7302

#DB
(.((.((((((.....)))))	chr5:43290991-43291285(-)$1	1	57	78	10.0639
(..(((.((((.....)))))	chr8:102217355-102217630(-)$1	1	220	241	11.3605
(((..((((((.....)).))	chr9:139560094-139560345(+)$1	1	163	184	13.4858
.((..(((.((.....)).))	chr3:128211706-128211991(+)$1	1	242	263	14.6901
...((((((((.....)))))	chr11:611844-612083(+)$1	1	182	203	10.2073
.(((((((.((......)).)	chr6:31698293-31698552(-)$1	1	128	149	8.6597
(....(((.((.....)).))	chr18:3450121-3450389(+)$1	1	61	82	15.0025
((((.(.((((.....)))).	chr20:1165115-1165373(-)$1	1	60	81	10.2086
....((.(.((.....)).).	chr3:128211661-128211906(+)$1	1	134	155	14.9550
(((.((.(((.....))).))	chr22:19418955-19419219(-)$1	1	107	128	9.3318
(((..(((.((.....))..)	chr6:32148374-32148640(+)$1	1	41	62	13.7302

#PSSM
a : 0.09	g : 0.09	= : 0.09	! : 0.09	$ : 0.09	" : 0.09	b : 0.09	G : 0.09	# : 0.09	c : 0.09	f : 0.09	
# : 0.18	[ : 0.09	! : 0.09	= : 0.09	b : 0.09	$ : 0.09	g : 0.09	G : 0.09	c : 0.09	f : 0.09	
b : 0.18	# : 0.18	! : 0.09	= : 0.09	$ : 0.09	g : 0.09	G : 0.09	c : 0.09	f : 0.09	
! : 0.27	# : 0.18	b : 0.09	c : 0.09	h : 0.09	g : 0.09	a : 0.09	[ : 0.09	
! : 0.27	[ : 0.18	b : 0.18	c : 0.09	h : 0.09	g : 0.09	# : 0.09	
c : 0.36	b : 0.18	f : 0.09	d : 0.09	h : 0.09	g : 0.09	a : 0.09	
[ : 0.36	c : 0.27	f : 0.09	d : 0.09	h : 0.09	g : 0.09	
c : 0.36	d : 0.27	f : 0.09	h : 0.09	g : 0.09	a : 0.09	
[ : 0.45	d : 0.27	f : 0.09	h : 0.09	c : 0.09	
b : 0.54	d : 0.18	f : 0.09	h : 0.09	c : 0.09	
b : 0.54	d : 0.18	f : 0.09	h : 0.09	n : 0.09	
n : 0.90	o : 0.09	
n : 0.90	o : 0.09	
n : 0.90	o : 0.09	
n : 0.90	o : 0.09	
n : 0.81	o : 0.09	c : 0.09	
b : 0.45	d : 0.18	f : 0.09	h : 0.09	o : 0.09	c : 0.09	
b : 0.54	d : 0.18	f : 0.09	h : 0.09	c : 0.09	
] : 0.45	d : 0.18	f : 0.09	h : 0.09	b : 0.09	2 : 0.09	
d : 0.27	c : 0.18	f : 0.09	h : 0.09	] : 0.09	a : 0.09	b : 0.09	2 : 0.09	
c : 0.36	] : 0.18	f : 0.09	d : 0.09	h : 0.09	g : 0.09	b : 0.09	

#score	131.69605241192733
#seq	11
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_transcript_m3_run1.txt

#BEAR
hhhhhh"""cccmmmmccc]hhhhhh	chr6:34664376-34664664(-)$1	288	178	204	10.5705
!!ffffff[a[ammmma]a]ffffff	chr20:29519335-29519599(-)$1	264	170	196	10.3870
eeeee####cccmmmmccc333eeee	chr16:88587519-88587850(+)$1	331	194	220	12.2255
gggiiiiiiiiimmmmiiiiiiiii3	chr5:137896650-137896883(-)$1	233	190	216	11.3629
:ffffff[cccammmma]ccc]ffff	chr11:639274-639550(+)$1	276	245	271	9.4954
a[a[bb[cccooooooccc]bb]a]a	chr7:932413-932656(+)$1	243	193	219	9.4974
""dddd[bbcccmmmmccc333bb]d	chr11:585371-585637(+)$1	266	97	123	11.0989
fff[bb####bbmmmmbb4444bb]f	chr6:153741534-153741749(+)$1	215	161	187	10.1183
c!!ccc[eeeeemmmmeeeee]ccc3	chr19:46701112-46701353(-)$1	241	99	125	9.3470
dddeeeee[cccmmmmccc]eeeee2	chr12:38557137-38557377(-)$1	240	128	154	10.9865
a[cccccc[cccmmmmccc]ccc333	chr8:1780273-1780564(+)$1	291	179	205	13.0465
dddd!!a[a!!ammmma]a]a22ddd	chr1:28906194-28906408(-)$1	214	181	207	10.2993
eeee[a[a[cccmmmmccca]a]eee	chr9:139565245-139565504(+)$1	259	108	134	11.8285
b[a!!bb[bb[ammmma]bb]bb]a]	chr5:648900-649144(+)$1	244	109	135	9.2379
ddd==========lll==========	chr16:88556779-88557031(+)$1	252	95	121	10.0569
iiiiiiiii[bbmmmmbb]iiiiiii	chr22:20112248-20112501(+)$1	253	185	211	10.9624
fffff[bb[cccmmmmccc]bb]fff	chr5:134259777-134260006(+)$1	229	144	170	11.2007
ee[eeeee!!bbmmmmbb22eeeee]	chr9:136133063-136133291(-)$1	228	87	113	9.7138
fff"""bb[cccmmmmccc]bb]fff	chr21:46835013-46835265(+)$1	252	192	218	11.5801
cc[bb[ccccccmmmmccc]ccc]bb	chr9:137241790-137242073(+)$1	283	101	127	11.6276
eeeee[ccc[bbmmmmbbccc]eeee	chr22:50041193-50041464(-)$1	271	62	88	10.0191
xxgggggggcccmmmmccc::ggggg	chr6:153741507-153741734(+)$1	227	28	54	9.7169
bb[iiiiiiiiimmmmiiiiiiiiib	chr5:43290991-43291285(-)$1	294	155	181	10.7328
ff[ccc[bb[bbmmmmbb]bb]cccf	chr5:1326730-1327021(-)$1	291	123	149	9.5630
ccciiiiiiiiimmmmiiiiiiiii:	chr5:137896629-137896850(-)$1	221	157	183	10.2599
ccc[ccc"""bbmmmmbb22ccc333	chr1:1283640-1283915(-)$1	275	60	86	11.1694
eeeee!!cccooooooccc]eeeeeb	chr11:611844-612083(+)$1	239	101	127	8.9185
iiiiiii[a[ccclllccc]aiiiii	chr16:88961283-88961540(-)$1	257	126	152	11.0070
ddd!!ddddcccmmmmccc4444ddd	chr7:111928873-111929110(+)$1	237	26	52	10.6857
!!a[a[ffffffmmmmffffff333a	chr9:126030114-126030395(-)$1	281	42	68	9.6563
###ccc"""cccmmmmccc333ccc4	chr5:649118-649359(+)$1	241	174	200	13.1167
bb[a[ccc[cccmmmmccc]ccc]a]	chr11:2018851-2019099(-)$1	248	111	137	12.7298
eeee[a[cccooooooccc]aeeeee	chr16:88960010-88960294(-)$1	284	47	73	9.5298
========[cccmmmmccc]======	chrM:14362-14583(-)$1	221	85	111	13.5469
dddd[ccc[cccmmmmccc22ccc]d	chr22:20110940-20111187(+)$1	247	101	127	11.6018
d[==========lll==========d	chr8:1782310-1782553(+)$1	243	59	85	10.2203
==:ffffffcccmmmmccc]ffffff	chr2:232573552-232573812(+)$1	260	181	207	10.1281
g####gggggggmmmmggggggg22g	chr5:651494-651745(+)$1	251	186	212	10.2437
c"""ccc[cccnnnnnccc]ccc333	chr9:96435320-96435616(+)$1	296	138	164	9.7811
g####eeeeeccclllccc]eeeeeg	chr15:69110989-69111241(-)$1	252	27	53	9.1762
ccc[eeeeecccmmmmccc]eeeee]	chr22:50029057-50029283(-)$1	226	105	131	11.2987
ffff[bb!!cccmmmmccc4444bb2	chrM:14252-14494(-)$1	242	23	49	11.4421
a####ccc[cccmmmmcccccca]ee	chr7:150786877-150787122(+)$1	245	139	165	12.1252
c[ffffff!!bbmmmmbb22ffffff	chr20:35484321-35484570(-)$1	249	213	239	9.6849
bb[ccc[bb[ccclllccc]bbccc]	chr13:114562821-114563066(-)$1	245	31	57	9.6563
:cccccc!!cccmmmmccc]ccc]cc	chr7:137447783-137447987(-)$1	204	98	124	11.7407
b[bb$$$$$cccmmmmccc4444bb]	chr11:65190630-65190889(+)$1	259	141	167	10.8694
ee[bb"""ddddmmmmdddd333bb]	chr22:50030421-50030683(-)$1	262	117	143	9.1971
dddd[bb[a[ccclllccc]a]bbdd	chr12:123994660-123994985(-)$1	325	192	218	9.1655
gggg"""cccooooooccc]gggggg	chr2:55250475-55250722(-)$1	247	204	230	10.1490
[a[ccc[bb[bbmmmmbbbbccc]ad	chr19:34882464-34882724(+)$1	260	42	68	9.7561

#otherMatches

#Seq PSSM
GGUCGCGAAGCUAGCUAGCAGCGGCC	chr6:34664376-34664664(-)$1	288	178	204	10.5705
cagggccacgcguagucacauggucu	chr20:29519335-29519599(-)$1	264	170	196	10.3870
AGCCUUCCCCUCCUAUGAGAUCAGGU	chr16:88587519-88587850(+)$1	331	194	220	12.2255
AGGAUUAUCUUGGACCUAAGAUAGUG	chr5:137896650-137896883(-)$1	233	190	216	11.3629
AACCUGUGCGCCAUCAGCGUGGACAG	chr11:639274-639550(+)$1	276	245	271	9.4954
GGUGUUUGCAGGUAAGUGUUGGGGGC	chr7:932413-932656(+)$1	243	193	219	9.4974
CCAGCUUGAGGUAGUAGCCCUUUCCA	chr11:585371-585637(+)$1	266	97	123	11.0989
CAUCUAUUUUUAUGCUUAUUUUUAAA	chr6:153741534-153741749(+)$1	215	161	187	10.1183
GGGGAGGggccaggugugguugcuca	chr19:46701112-46701353(-)$1	241	99	125	9.3470
guacucggaugggaggccgccuggga	chr12:38557137-38557377(-)$1	240	128	154	10.9865
CCGCCCUUGCUGUGGACAGAGAGACa	chr8:1780273-1780564(+)$1	291	179	205	13.0465
GGCUAAGGGAAGGAUGCGUGUGAAGC	chr1:28906194-28906408(-)$1	214	181	207	10.2993
GGGUGGGGAGCCGGCCGGCCGUGACC	chr9:139565245-139565504(+)$1	259	108	134	11.8285
CGUGGACUGUGAGGGGUGACUGUGAG	chr5:648900-649144(+)$1	244	109	135	9.2379
GAUGCAUGGUGAGGCGCUCGCCGUGC	chr16:88556779-88557031(+)$1	252	95	121	10.0569
UCAGGGUUGGGCUUGAGUGCAGCCCU	chr22:20112248-20112501(+)$1	253	185	211	10.9624
UGAUUGGGUGUGUUAUUAUUCUGAAU	chr5:134259777-134260006(+)$1	229	144	170	11.2007
GGGGAGGGUUUGUUCCUAUCUCUUUG	chr9:136133063-136133291(-)$1	228	87	113	9.7138
GCACACCCAGGGCCACCCCAGGCUGC	chr21:46835013-46835265(+)$1	252	192	218	11.5801
CAGACCCGCCAGAUGGCUGUGUGUGU	chr9:137241790-137242073(+)$1	283	101	127	11.6276
GGGAGUUGGUGAUGCCUCCCACCUCC	chr22:50041193-50041464(-)$1	271	62	88	10.0191
UUUUAUCACACUUUUUAGUUCCUUGG	chr6:153741507-153741734(+)$1	227	28	54	9.7169
CAUGUUAUGUAAAUUUUUAUGUGACU	chr5:43290991-43291285(-)$1	294	155	181	10.7328
AGAGGAGGAGCUGGAUGGAUUGUCCC	chr5:1326730-1327021(-)$1	291	123	149	9.5630
AGGAUUAUCUUGGACCUAAGAUAGUG	chr5:137896629-137896850(-)$1	221	157	183	10.2599
GCUAGGGUUUGCAGAAGCUUCCCGAG	chr1:1283640-1283915(-)$1	275	60	86	11.1694
GACACCUGGUCUGUGCACCUGUGUUG	chr11:611844-612083(+)$1	239	101	127	8.9185
GGUCAGGAUGGGCAGGGCUGGCCUGA	chr16:88961283-88961540(-)$1	257	126	152	11.0070
uccagacaagcucucaaguccauuug	chr7:111928873-111929110(+)$1	237	26	52	10.6857
GGGGCAGGUGUUGGAGGACAUUGGGG	chr9:126030114-126030395(-)$1	281	42	68	9.6563
UGAGGUGUGACUGUGAGGUGUGACUG	chr5:649118-649359(+)$1	241	174	200	13.1167
GGGUGCUGGAGGAGAGCUUGUGGGAG	chr11:2018851-2019099(-)$1	248	111	137	12.7298
CAGGAGGGGUGCGCUGGCCGCCUUGC	chr16:88960010-88960294(-)$1	284	47	73	9.5298
UUUAGGGGGAAUGAUGGUUGUCUUUG	chrM:14362-14583(-)$1	221	85	111	13.5469
UUCGGGCAGUGUAAGAGCAGAUGUGU	chr22:20110940-20111187(+)$1	247	101	127	11.6018
ACACCUGCUUGGGGCCCAGGCGGGUU	chr8:1782310-1782553(+)$1	243	59	85	10.2203
GAAACUCGUCUGUGGCCGGUAUGAGU	chr2:232573552-232573812(+)$1	260	181	207	10.1281
CUUUACUCCCUGGCUAUAGGGGGAUG	chr5:651494-651745(+)$1	251	186	212	10.2437
CAGGGUGGACCGAGGGGGUACACAGA	chr9:96435320-96435616(+)$1	296	138	164	9.7811
CGGGACCCGGCGCCUAGCGUUUGGGG	chr15:69110989-69111241(-)$1	252	27	53	9.1762
AAAACUUUACCCAGUGGGGCUGAAGC	chr22:50029057-50029283(-)$1	226	105	131	11.2987
AUAUACUACAGCGAUGGCUAUUGAGG	chrM:14252-14494(-)$1	242	23	49	11.4421
GUAUAGGCCUUCAACAGGAGCCCGCU	chr7:150786877-150787122(+)$1	245	139	165	12.1252
UGAGGCCUGCCCUGCCGGAGAGGCCU	chr20:35484321-35484570(-)$1	249	213	239	9.6849
ACUUGCUGGCUCAUCCUGAACUGCAU	chr13:114562821-114563066(-)$1	245	31	57	9.6563
UUACCAUACCACUUGAGUGAAUGAGU	chr7:137447783-137447987(-)$1	204	98	124	11.7407
GGCUGUGAACCCGCCUGGGGAUGAGG	chr11:65190630-65190889(+)$1	259	141	167	10.8694
GUGGGAGGCGGGUGAGCCCGGGGCCA	chr22:50030421-50030683(-)$1	262	117	143	9.1971
GGGCACAGGCGGGCCCCCCACAUGGC	chr12:123994660-123994985(-)$1	325	192	218	9.1655
gaucaugcuuggguggaagagaucug	chr2:55250475-55250722(-)$1	247	204	230	10.1490
UGUCCCUGGUAUGAGGAUCCGGGUCU	chr19:34882464-34882724(+)$1	260	42	68	9.7561

#DB
((((((...(((....))).))))))	chr6:34664376-34664664(-)$1	1	178	204	10.5705
..((((((.(.(....).).))))))	chr20:29519335-29519599(-)$1	1	170	196	10.3870
(((((....(((....)))...))))	chr16:88587519-88587850(+)$1	1	194	220	12.2255
((((((((((((....))))))))).	chr5:137896650-137896883(-)$1	1	190	216	11.3629
.((((((.((((....).))).))))	chr11:639274-639550(+)$1	1	245	271	9.4954
(.(.((.(((......))).)).).)	chr7:932413-932656(+)$1	1	193	219	9.4974
..((((.(((((....)))...)).)	chr11:585371-585637(+)$1	1	97	123	11.0989
(((.((....((....))....)).)	chr6:153741534-153741749(+)$1	1	161	187	10.1183
(..(((.(((((....))))).))).	chr19:46701112-46701353(-)$1	1	99	125	9.3470
((((((((.(((....))).))))).	chr12:38557137-38557377(-)$1	1	128	154	10.9865
(.((((((.(((....))).)))...	chr8:1780273-1780564(+)$1	1	179	205	13.0465
((((..(.(..(....).).)..)))	chr1:28906194-28906408(-)$1	1	181	207	10.2993
((((.(.(.(((....)))).).)))	chr9:139565245-139565504(+)$1	1	108	134	11.8285
(.(..((.((.(....).)).)).).	chr5:648900-649144(+)$1	1	109	135	9.2379
)))((((((((((...))))))))))	chr16:88556779-88557031(+)$1	1	95	121	10.0569
(((((((((.((....)).)))))))	chr22:20112248-20112501(+)$1	1	185	211	10.9624
(((((.((.(((....))).)).)))	chr5:134259777-134260006(+)$1	1	144	170	11.2007
((.(((((..((....))..))))).	chr9:136133063-136133291(-)$1	1	87	113	9.7138
(((...((.(((....))).)).)))	chr21:46835013-46835265(+)$1	1	192	218	11.5801
((.((.((((((....))).))).))	chr9:137241790-137242073(+)$1	1	101	127	11.6276
(((((.(((.((....))))).))))	chr22:50041193-50041464(-)$1	1	62	88	10.0191
..)))))))(((....)))..(((((	chr6:153741507-153741734(+)$1	1	28	54	9.7169
((.(((((((((....))))))))))	chr5:43290991-43291285(-)$1	1	155	181	10.7328
((.(((.((.((....)).)).))))	chr5:1326730-1327021(-)$1	1	123	149	9.5630
)))(((((((((....))))))))).	chr5:137896629-137896850(-)$1	1	157	183	10.2599
(((.(((...((....))..)))...	chr1:1283640-1283915(-)$1	1	60	86	11.1694
(((((..(((......))).))))))	chr11:611844-612083(+)$1	1	101	127	8.9185
(((((((.(.(((...))).))))))	chr16:88961283-88961540(-)$1	1	126	152	11.0070
(((..(((((((....)))....)))	chr7:111928873-111929110(+)$1	1	26	52	10.6857
..(.(.((((((....))))))...)	chr9:126030114-126030395(-)$1	1	42	68	9.6563
...(((...(((....)))...))).	chr5:649118-649359(+)$1	1	174	200	13.1167
((.(.(((.(((....))).))).).	chr11:2018851-2019099(-)$1	1	111	137	12.7298
((((.(.(((......))).))))))	chr16:88960010-88960294(-)$1	1	47	73	9.5298
((((((((.(((....))).))))))	chrM:14362-14583(-)$1	1	85	111	13.5469
((((.(((.(((....)))..))).)	chr22:20110940-20111187(+)$1	1	101	127	11.6018
(.((((((((((...)))))))))))	chr8:1782310-1782553(+)$1	1	59	85	10.2203
)).(((((((((....))).))))))	chr2:232573552-232573812(+)$1	1	181	207	10.1281
(....(((((((....)))))))..)	chr5:651494-651745(+)$1	1	186	212	10.2437
(...(((.(((.....))).)))...	chr9:96435320-96435616(+)$1	1	138	164	9.7811
(....((((((((...))).))))))	chr15:69110989-69111241(-)$1	1	27	53	9.1762
(((.((((((((....))).))))).	chr22:50029057-50029283(-)$1	1	105	131	11.2987
((((.((..(((....)))....)).	chrM:14252-14494(-)$1	1	23	49	11.4421
(....(((.(((....))))))).))	chr7:150786877-150787122(+)$1	1	139	165	12.1252
(.((((((..((....))..))))))	chr20:35484321-35484570(-)$1	1	213	239	9.6849
((.(((.((.(((...))).))))).	chr13:114562821-114563066(-)$1	1	31	57	9.6563
.((((((..(((....))).))).))	chr7:137447783-137447987(-)$1	1	98	124	11.7407
(.((.....(((....)))....)).	chr11:65190630-65190889(+)$1	1	141	167	10.8694
((.((...((((....))))...)).	chr22:50030421-50030683(-)$1	1	117	143	9.1971
((((.((.(.(((...))).).))))	chr12:123994660-123994985(-)$1	1	192	218	9.1655
((((...(((......))).))))))	chr2:55250475-55250722(-)$1	1	204	230	10.1490
.(.(((.((.((....))))))).))	chr19:34882464-34882724(+)$1	1	42	68	9.7561

#PSSM
e : 0.13	c : 0.13	d : 0.13	f : 0.09	b : 0.09	g : 0.07	a : 0.05	! : 0.03	: : 0.03	i : 0.03	= : 0.03	h : 0.01	" : 0.01	x : 0.01	# : 0.01	[ : 0.01	
e : 0.13	f : 0.11	[ : 0.11	d : 0.11	c : 0.09	# : 0.07	! : 0.05	b : 0.05	g : 0.03	" : 0.03	i : 0.03	= : 0.03	h : 0.01	x : 0.01	a : 0.01	
[ : 0.15	f : 0.13	d : 0.13	e : 0.09	c : 0.09	# : 0.07	g : 0.05	a : 0.05	i : 0.03	= : 0.03	h : 0.01	! : 0.01	: : 0.01	" : 0.01	b : 0.01	
e : 0.13	c : 0.13	f : 0.11	i : 0.09	[ : 0.09	d : 0.07	= : 0.05	b : 0.05	# : 0.05	! : 0.03	" : 0.03	g : 0.03	h : 0.01	a : 0.01	
c : 0.17	e : 0.11	[ : 0.11	f : 0.09	i : 0.09	b : 0.07	! : 0.05	= : 0.05	# : 0.05	" : 0.03	h : 0.01	d : 0.01	g : 0.01	a : 0.01	$ : 0.01	
c : 0.23	i : 0.09	b : 0.09	f : 0.07	e : 0.07	[ : 0.07	= : 0.05	" : 0.05	d : 0.03	! : 0.03	a : 0.03	g : 0.03	h : 0.01	# : 0.01	$ : 0.01	
c : 0.17	[ : 0.15	f : 0.09	i : 0.09	b : 0.09	" : 0.07	e : 0.07	= : 0.05	# : 0.03	g : 0.03	a : 0.01	! : 0.01	d : 0.01	$ : 0.01	
c : 0.19	[ : 0.11	b : 0.11	e : 0.09	" : 0.07	f : 0.07	i : 0.07	= : 0.05	# : 0.03	g : 0.03	! : 0.03	a : 0.01	d : 0.01	$ : 0.01	
[ : 0.19	c : 0.15	b : 0.09	i : 0.07	! : 0.07	" : 0.05	e : 0.05	a : 0.05	# : 0.03	= : 0.03	g : 0.03	d : 0.03	f : 0.03	$ : 0.01	
c : 0.52	[ : 0.13	i : 0.05	! : 0.05	e : 0.03	= : 0.03	a : 0.01	# : 0.01	b : 0.01	" : 0.01	f : 0.01	g : 0.01	d : 0.01	
c : 0.52	b : 0.15	o : 0.07	i : 0.05	[ : 0.03	= : 0.03	e : 0.01	! : 0.01	f : 0.01	g : 0.01	d : 0.01	
c : 0.49	b : 0.15	a : 0.07	o : 0.07	i : 0.05	= : 0.03	e : 0.01	f : 0.01	g : 0.01	n : 0.01	d : 0.01	
m : 0.78	o : 0.07	c : 0.07	= : 0.01	l : 0.01	n : 0.01	
m : 0.78	l : 0.11	o : 0.07	n : 0.01	
m : 0.78	l : 0.11	o : 0.07	n : 0.01	
m : 0.78	l : 0.09	o : 0.07	= : 0.01	n : 0.01	
c : 0.58	b : 0.15	a : 0.07	i : 0.05	= : 0.03	e : 0.01	f : 0.01	g : 0.01	d : 0.01	
c : 0.58	b : 0.15	] : 0.07	i : 0.05	= : 0.03	e : 0.01	f : 0.01	g : 0.01	d : 0.01	
c : 0.62	i : 0.05	2 : 0.05	a : 0.03	b : 0.03	= : 0.03	] : 0.03	4 : 0.01	e : 0.01	f : 0.01	g : 0.01	d : 0.01	
] : 0.43	i : 0.07	4 : 0.07	2 : 0.07	3 : 0.05	c : 0.05	b : 0.05	= : 0.03	e : 0.01	a : 0.01	: : 0.01	f : 0.01	g : 0.01	d : 0.01	
c : 0.19	e : 0.11	b : 0.09	f : 0.07	3 : 0.07	i : 0.07	4 : 0.07	a : 0.07	= : 0.05	] : 0.03	g : 0.03	h : 0.01	: : 0.01	2 : 0.01	
c : 0.17	e : 0.11	i : 0.09	] : 0.09	b : 0.09	f : 0.07	3 : 0.07	4 : 0.07	= : 0.05	g : 0.05	h : 0.01	2 : 0.01	a : 0.01	
c : 0.23	e : 0.15	i : 0.09	f : 0.07	] : 0.07	b : 0.07	= : 0.05	g : 0.05	4 : 0.05	3 : 0.03	h : 0.01	2 : 0.01	a : 0.01	
e : 0.17	f : 0.11	b : 0.11	] : 0.11	i : 0.09	c : 0.09	3 : 0.07	= : 0.05	d : 0.03	g : 0.03	h : 0.01	a : 0.01	2 : 0.01	
e : 0.19	f : 0.11	i : 0.09	c : 0.09	] : 0.07	3 : 0.07	b : 0.07	d : 0.05	a : 0.05	= : 0.05	g : 0.03	h : 0.01	2 : 0.01	
f : 0.15	d : 0.13	] : 0.13	e : 0.09	3 : 0.09	g : 0.07	b : 0.05	a : 0.03	2 : 0.03	= : 0.03	i : 0.03	h : 0.01	: : 0.01	4 : 0.01	c : 0.01	

#score	541.534117306769
#seq	51
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_CDS_m3_run1.txt

#BEAR
cc[eeeee####cccmmmmccc22eeeee22ccc22g	chr3:99567548-99567808(+)$1	260	162	199	11.4786
###iiiiiiiiiddddllldddd333iiiiiiiii33	chr3:11848721-11849008(-)$1	287	166	203	14.7109
###bb[iiiiiiiiinnnnniiiiiiiiibb4444cc	chr6:64451681-64451933(+)$1	252	143	180	12.7794
ddd"""ccc!!ddddmmmmddddcccdddd]ffffff	chr5:112228337-112228641(-)$1	304	130	167	10.8785
!!iiiiiiiiicccooooooccc333iiiiiiiii22	chr2:186655215-186655509(-)$1	294	207	244	16.5980
##bb[dddd[bb!!aooooooa22bbdddd]bbdddd	chr2:242688146-242688438(+)$1	292	237	274	11.7471
!!ccc"""eeeee[aooooooa]eeeee4444ccc]d	chr12:57114082-57114361(-)$1	279	6	43	13.1725
::ggggggg"""bboooooobb4444ggggggg:ggg	chr3:99568245-99568495(+)$1	250	83	120	12.2525
=========[ccc[annnnna]ccc]===========	chr7:141478312-141478615(+)$1	303	195	232	15.9711
fff!!dddd[cccrrrrrrrrrccc]dddd333ffff	chr17:44626328-44626575(-)$1	247	91	128	11.4781
ccc!!ffffffddddnnnnndddd333ffffff22cc	chr3:99569629-99569892(+)$1	263	98	135	10.9430
==!!ccc[ccc!!bbmmmmbb22ccc]ccc]======	chr12:56320825-56321066(-)$1	241	116	153	12.1196
eeee"""bb!!ccclllccc333bb]eeeee]iiiii	chr6:3259138-3259404(+)$1	266	193	230	11.4966
b!!iiiiiiiiiccclllccc]iiiiiiiiibbbbdd	chr7:44084334-44084641(+)$1	307	193	230	12.6948
ccggggggg"""bboooooobb4444ggggggg:FFF	chr3:99568176-99568417(+)$1	241	152	189	12.4584
!!dddd[ccccccrrrrrrrrrccc]ccc22dddd22	chr3:99569009-99569301(+)$1	292	240	277	11.4192
dddd!!bb!!eeeeennnnneeeee22bb333dddd]	chr2:186657735-186657997(-)$1	262	119	156	10.9025

#otherMatches

#Seq PSSM
GUAUCACUGCAGUACUCGUGUAAGAGUGAGGACUCUC	chr3:99567548-99567808(+)$1	260	162	199	11.4786
cuauugacuucucucuaugggagguuagaagucaacu	chr3:11848721-11849008(-)$1	287	166	203	14.7109
UUCUGCUGGUUUUGGCUUUUCCAAGAUCACAAUGAGG	chr6:64451681-64451933(+)$1	252	143	180	12.7794
UGGUCUGGACUAGGGUUUCUCCUUCCCCGCUGCCUGC	chr5:112228337-112228641(-)$1	304	130	167	10.8785
CUUGAGGCUUUUCUGAAACAAGAACUGAAGCUUCACU	chr2:186655215-186655509(-)$1	294	207	244	16.5980
UCGUGCCACGCCCACGUCUAAGCCGGGUGGAACAGGC	chr2:242688146-242688438(+)$1	292	237	274	11.7471
UCCAACUUUUAGGUCAAACAGGUCCUAGUGCUUUGUC	chr12:57114082-57114361(-)$1	279	6	43	13.1725
CCAUGUAUUCAUGAAUUUUCUCUUUUAAUGCAUCCAC	chr3:99568245-99568495(+)$1	250	83	120	12.2525
ACGGAAAGGUCAGUCUACCUGUCUGCUUUUUUUGUGU	chr7:141478312-141478615(+)$1	303	195	232	15.9711
CCUUUGGACUCUUUUUGACUUUGGGUGUUCUGUGGGU	chr17:44626328-44626575(-)$1	247	91	128	11.4781
GGUCAGCUCUUGGAUUUUCUGUCUUUGAAGGGUGAGC	chr3:99569629-99569892(+)$1	263	98	135	10.9430
UGGGGAGGGGGGCGGGACCCCAGCCCGCUCACGCCGG	chr12:56320825-56321066(-)$1	241	116	153	12.1196
GUCCACUUCCACGUCAUGCGGCUGACGGACUCGCUGU	chr6:3259138-3259404(+)$1	266	193	230	11.4966
CCCAGGCAGGUGGCCUGGGGCUUACCUGUCUGCCCCU	chr7:44084334-44084641(+)$1	307	193	230	12.6948
CCAUGUAUUCAUGAAUUUUCUCUUUUAAUGCAUCCAC	chr3:99568176-99568417(+)$1	241	152	189	12.4584
UUCUUUUACUGAGUUUUUCAACCUCUAGUUUAAAGUC	chr3:99569009-99569301(+)$1	292	240	277	11.4192
UUGUAGUGCAUAAGUAUUUAAUUUAGACAAAGACAGU	chr2:186657735-186657997(-)$1	262	119	156	10.9025

#DB
((.(((((....(((....)))..)))))..)))..)	chr3:99567548-99567808(+)$1	1	162	199	11.4786
...(((((((((((((...))))...)))))))))..	chr3:11848721-11849008(-)$1	1	166	203	14.7109
...((.(((((((((.....)))))))))))....))	chr6:64451681-64451933(+)$1	1	143	180	12.7794
(((...(((..((((....))))))))))).))))))	chr5:112228337-112228641(-)$1	1	130	167	10.8785
..((((((((((((......)))...)))))))))..	chr2:186655215-186655509(-)$1	1	207	244	16.5980
..((.((((.((..(......)..)))))).))))))	chr2:242688146-242688438(+)$1	1	237	274	11.7471
..(((...(((((.(......).)))))....))).)	chr12:57114082-57114361(-)$1	1	6	43	13.1725
..(((((((...((......))....))))))).(((	chr3:99568245-99568495(+)$1	1	83	120	12.2525
(((((((((.(((.(.....).))).)))))))))))	chr7:141478312-141478615(+)$1	1	195	232	15.9711
(((..((((.(((.........))).))))...))))	chr17:44626328-44626575(-)$1	1	91	128	11.4781
(((..((((((((((.....))))...))))))..))	chr3:99569629-99569892(+)$1	1	98	135	10.9430
((..(((.(((..((....))..))).))).))))))	chr12:56320825-56321066(-)$1	1	116	153	12.1196
((((...((..(((...)))...)).))))).)))))	chr6:3259138-3259404(+)$1	1	193	230	11.4966
(..((((((((((((...))).)))))))))))))))	chr7:44084334-44084641(+)$1	1	193	230	12.6948
))(((((((...((......))....))))))).)))	chr3:99568176-99568417(+)$1	1	152	189	12.4584
..((((.((((((.........))).)))..))))..	chr3:99569009-99569301(+)$1	1	240	277	11.4192
((((..((..(((((.....)))))..))...)))).	chr2:186657735-186657997(-)$1	1	119	156	10.9025

#PSSM
c : 0.17	# : 0.17	! : 0.17	d : 0.11	= : 0.11	: : 0.05	f : 0.05	e : 0.05	b : 0.05	
! : 0.23	c : 0.17	# : 0.17	d : 0.11	= : 0.11	: : 0.05	f : 0.05	e : 0.05	
d : 0.17	# : 0.11	c : 0.11	g : 0.11	! : 0.11	[ : 0.05	i : 0.05	b : 0.05	= : 0.05	f : 0.05	e : 0.05	
i : 0.17	! : 0.17	e : 0.11	b : 0.11	g : 0.11	d : 0.11	" : 0.05	c : 0.05	= : 0.05	
i : 0.17	! : 0.17	" : 0.11	c : 0.11	g : 0.11	e : 0.05	b : 0.05	[ : 0.05	= : 0.05	d : 0.05	
i : 0.17	" : 0.17	d : 0.17	g : 0.11	e : 0.05	[ : 0.05	= : 0.05	f : 0.05	c : 0.05	! : 0.05	
i : 0.23	c : 0.11	d : 0.11	" : 0.11	g : 0.11	e : 0.05	= : 0.05	f : 0.05	[ : 0.05	b : 0.05	
i : 0.23	c : 0.11	d : 0.11	g : 0.11	b : 0.11	e : 0.05	" : 0.05	= : 0.05	f : 0.05	[ : 0.05	
i : 0.23	c : 0.17	d : 0.11	g : 0.11	# : 0.05	e : 0.05	= : 0.05	f : 0.05	b : 0.05	! : 0.05	
i : 0.23	! : 0.17	[ : 0.17	" : 0.11	c : 0.11	# : 0.05	e : 0.05	f : 0.05	
i : 0.23	c : 0.23	! : 0.11	e : 0.11	" : 0.11	# : 0.05	b : 0.05	f : 0.05	
c : 0.29	i : 0.17	d : 0.11	e : 0.11	" : 0.11	# : 0.05	b : 0.05	! : 0.05	
c : 0.41	d : 0.17	! : 0.11	e : 0.11	b : 0.11	i : 0.05	
c : 0.23	d : 0.17	b : 0.17	[ : 0.11	r : 0.11	i : 0.05	! : 0.05	e : 0.05	
d : 0.17	o : 0.17	a : 0.17	c : 0.11	r : 0.11	i : 0.05	b : 0.05	l : 0.05	e : 0.05	
o : 0.29	n : 0.23	m : 0.17	r : 0.11	l : 0.11	d : 0.05	
o : 0.29	n : 0.23	m : 0.17	l : 0.17	r : 0.11	
o : 0.29	n : 0.23	m : 0.17	l : 0.11	r : 0.11	c : 0.05	
o : 0.29	n : 0.23	m : 0.17	r : 0.11	c : 0.11	l : 0.05	
o : 0.29	n : 0.23	c : 0.17	d : 0.11	r : 0.11	b : 0.05	
c : 0.17	d : 0.17	b : 0.17	o : 0.11	r : 0.11	i : 0.05	a : 0.05	3 : 0.05	e : 0.05	
d : 0.17	c : 0.11	a : 0.11	b : 0.11	] : 0.11	r : 0.11	i : 0.05	2 : 0.05	3 : 0.05	e : 0.05	
c : 0.23	2 : 0.17	d : 0.17	i : 0.11	4 : 0.11	] : 0.05	3 : 0.05	e : 0.05	
c : 0.29	2 : 0.11	3 : 0.11	i : 0.11	e : 0.11	4 : 0.11	d : 0.05	b : 0.05	
c : 0.29	e : 0.17	3 : 0.17	i : 0.11	b : 0.11	4 : 0.11	
] : 0.23	3 : 0.17	e : 0.11	i : 0.11	c : 0.11	4 : 0.11	b : 0.05	2 : 0.05	
i : 0.23	e : 0.17	d : 0.17	g : 0.11	= : 0.05	3 : 0.05	] : 0.05	c : 0.05	2 : 0.05	
i : 0.23	e : 0.17	d : 0.17	g : 0.11	c : 0.11	= : 0.05	f : 0.05	b : 0.05	
i : 0.23	d : 0.17	e : 0.11	g : 0.11	c : 0.11	4 : 0.05	= : 0.05	f : 0.05	b : 0.05	
i : 0.17	d : 0.17	2 : 0.11	g : 0.11	b : 0.05	4 : 0.05	= : 0.05	f : 0.05	c : 0.05	e : 0.05	3 : 0.05	
i : 0.17	] : 0.17	2 : 0.11	g : 0.11	3 : 0.11	b : 0.05	4 : 0.05	= : 0.05	f : 0.05	e : 0.05	
i : 0.11	4 : 0.11	f : 0.11	b : 0.11	g : 0.11	= : 0.11	3 : 0.11	c : 0.05	] : 0.05	d : 0.05	
i : 0.17	c : 0.11	f : 0.11	b : 0.11	g : 0.11	= : 0.11	d : 0.11	4 : 0.05	3 : 0.05	
i : 0.17	d : 0.17	c : 0.11	f : 0.11	: : 0.11	= : 0.11	4 : 0.05	2 : 0.05	b : 0.05	
i : 0.17	d : 0.17	2 : 0.11	f : 0.11	= : 0.11	4 : 0.05	c : 0.05	g : 0.05	b : 0.05	F : 0.05	
2 : 0.17	d : 0.17	c : 0.11	f : 0.11	= : 0.11	3 : 0.05	] : 0.05	g : 0.05	i : 0.05	F : 0.05	
d : 0.17	g : 0.11	c : 0.11	f : 0.11	2 : 0.11	= : 0.11	3 : 0.05	i : 0.05	F : 0.05	] : 0.05	

#score	213.10176811804715
#seq	17
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF651CNX_BUD13_CDS_m2_run1.txt

#BEAR
iiiiiiiiuuuuuuuuuuuuiiii	chr2:26587586-26587841(+)$1	255	27	51	23.6617
iiiiiiiivvvvvvvvvvvvviii	chr17:61666477-61666719(+)$1	242	81	105	22.7003
==[dddduuuuuuuuuuuudddd2	chr15:69739084-69739371(+)$1	287	90	114	22.3856
ffffffwwwwwwwwwwwwwwffff	chr12:49665926-49666172(+)$1	246	53	77	20.1907
iiiiiiiitttttttttttiiiii	chr12:123058813-123059098(+)$1	285	112	136	24.0413
bddddyyyyyyyyyyyyyyyyddd	chr18:12535426-12535716(-)$1	290	91	115	19.7853
=======vvvvvvvvvvvvv====	chr1:24975238-24975491(+)$1	253	150	174	23.5012
[gggggggtttttttttttggggg	chr1:26873660-26873941(+)$1	281	55	79	23.7983
dddddccctttttttttttccc]d	chr8:145153740-145154012(-)$1	272	78	102	22.7611
iiiiiiiitttttttttttiiiii	chr2:86707175-86707454(+)$1	279	153	177	24.0413
b!!dddduuuuuuuuuuuudddd2	chr11:70265867-70266135(+)$1	268	217	241	22.1075
cc!!ddddtttttttttttdddd2	chr1:145439686-145439931(+)$1	245	174	198	22.5747
:::eeeeettttttttttteeeee	chr17:26911349-26911585(-)$1	236	107	131	19.8309
:eeeeevvvvvvvvvvvvveeeee	chr15:63981760-63981975(-)$1	215	12	36	21.0521
hhhhhhhhuuuuuuuuuuuuhhhh	chrX:64737809-64738170(-)$1	361	246	270	21.6655
hhhhh[bbtttttttttttbb]hh	chr22:19906981-19907220(-)$1	239	7	31	22.6641
ggg!!ccctttttttttttccc22	chr16:67473078-67473378(-)$1	300	95	119	23.6520
##fffffftttttttttttfffff	chr2:178080377-178080592(+)$1	215	33	57	22.0664
=====[cccssssssssssccc]=	chr1:144879077-144879342(-)$1	265	180	204	16.5336
f!!eeeeettttttttttteeeee	chr20:52831827-52832078(+)$1	251	189	213	23.0985
c[fffffftttttttttttfffff	chr1:44443540-44443756(+)$1	216	30	54	22.3205
"eeeeevvvvvvvvvvvvveeeee	chr17:30689781-30690074(+)$1	293	80	104	21.9593
ccbb!!bbyyyyyyyyyyyyyyyy	chr7:100421711-100421966(-)$1	255	69	93	18.7567
eeeeeeeettttttttttteeeee	chr16:67228196-67228459(+)$1	263	84	108	22.8380
=####ccctttttttttttccc22	chr16:57499759-57500013(+)$1	254	76	100	22.9541
hhhhhhhhuuuuuuuuuuuuhhhh	chr3:184045272-184045552(+)$1	280	185	209	21.6655
:dddd!!attttttttttta22dd	chr16:72130221-72130460(+)$1	239	76	100	21.7151
=======vvvvvvvvvvvvv====	chr2:153550948-153551193(-)$1	245	71	95	23.5012
gggggggvvvvvvvvvvvvvgggg	chr9:114153929-114154201(-)$1	272	92	116	23.2774
eeeee[auuuuuuuuuuuuaeeee	chr6:33272264-33272579(-)$1	315	246	270	23.1370
hhhhhccctttttttttttccc]h	chr6:160467441-160467675(+)$1	234	93	117	23.1960
dd[eeeeettttttttttteeeee	chr2:70456039-70456346(-)$1	307	254	278	22.8393
ggggggguuuuuuuuuuuuggggg	chr12:57969978-57970220(+)$1	242	66	90	23.4868
eeeee[bbtttttttttttbbeee	chr6:158327026-158327299(+)$1	273	15	39	22.8818
hhhhh!!auuuuuuuuuuuua22h	chr21:33064592-33064864(-)$1	272	121	145	22.4936
cc[bbwwwwwwwwwwwwwwbb]cc	chr13:111955229-111955491(+)$1	262	151	175	19.8581
ggggggg[assssssssssa]ggg	chr20:45918807-45919045(-)$1	238	110	134	16.8970
eee!!cccuuuuuuuuuuuuccc2	chr16:56435605-56435864(-)$1	259	34	58	22.8435
eee!!ccctttttttttttccc22	chr7:103301837-103302075(-)$1	238	180	204	23.2530
gggggggvvvvvvvvvvvvvgggg	chr2:114500296-114500569(-)$1	273	162	186	23.2774
f!!eeeeettttttttttteeeee	chr17:73058094-73058393(+)$1	299	153	177	23.0985
::ddddwwwwwwwwwwwwwwdddd	chr12:7283198-7283507(+)$1	309	284	308	18.3553
========ttttttttttt=====	chr19:17439109-17439351(-)$1	242	149	173	24.1895
:ffffffuuuuuuuuuuuufffff	chr21:37734370-37734623(+)$1	253	126	150	20.8253
fffffyyyyyyyyyyyyyyyyfff	chr2:128522415-128522668(-)$1	253	76	100	19.8863
""ccc[bbtttttttttttbb]cc	chr1:193094139-193094373(+)$1	234	60	84	22.8089
cc[dddduuuuuuuuuuuudddd]	chr1:26131485-26131763(+)$1	278	50	74	22.3293
eeeeewwwwwwwwwwwwwweeeee	chr5:176618869-176619115(+)$1	246	69	93	20.3578
hhhh!!bbtttttttttttbb]hh	chr3:50098914-50099162(+)$1	248	44	68	22.7760
ggggggbbtttttttttttbb]gg	chr4:958922-959178(-)$1	256	96	120	23.5121
iiiiiiivvvvvvvvvvvvviiii	chr3:183862565-183862799(+)$1	234	168	192	23.5357
gggggggwwwwwwwwwwwwwwggg	chr5:149212342-149212610(+)$1	268	235	259	21.7932

#otherMatches

#Seq PSSM
AUUAUGACUUCAGUUUGCAUGUUG	chr2:26587586-26587841(+)$1	255	27	51	23.6617
GCAGGGGCUUUUGUAUUUCCUGCC	chr17:61666477-61666719(+)$1	242	81	105	22.7003
AGCUGAUCUUUUUCCUCUUGUCAU	chr15:69739084-69739371(+)$1	287	90	114	22.3856
UGUGAACACUAAAUGAAACUUUCG	chr12:49665926-49666172(+)$1	246	53	77	20.1907
ACGUAAGUAAAUAGUGACCAUUUG	chr12:123058813-123059098(+)$1	285	112	136	24.0413
AUUAUUUUAUUUUCCCCUUCUAUA	chr18:12535426-12535716(-)$1	290	91	115	19.7853
UUUUUGAAUGGAAAAAAUGCUCGA	chr1:24975238-24975491(+)$1	253	150	174	23.5012
GGGCACCUGUAUGCUAUGAAGGUG	chr1:26873660-26873941(+)$1	281	55	79	23.7983
AAGAGCAGGGAAGCAACAACUGUC	chr8:145153740-145154012(-)$1	272	78	102	22.7611
CUCCAGCAGAAUCCCUCAGUGUUG	chr2:86707175-86707454(+)$1	279	153	177	24.0413
AAAUGCCCAACUUGAAAACGGCAC	chr11:70265867-70266135(+)$1	268	217	241	22.1075
CUCAAGAGACAAAGAAAAACUUUG	chr1:145439686-145439931(+)$1	245	174	198	22.5747
AUUCUGGCCAACAUGGACAGCCAG	chr17:26911349-26911585(-)$1	236	107	131	19.8309
AGCUUUUCUAAAAAUACUUAAAGU	chr15:63981760-63981975(-)$1	215	12	36	21.0521
AGGCUUCUGGCCCAGAAAAGAGGA	chrX:64737809-64738170(-)$1	361	246	270	21.6655
UCUUCUGGACCUCACAAGCCCUGA	chr22:19906981-19907220(-)$1	239	7	31	22.6641
GUGCUGAGCAAGCUCCAUACUCUC	chr16:67473078-67473378(-)$1	300	95	119	23.6520
AGGGUUCUAAGGGGUGUAGAGAAC	chr2:178080377-178080592(+)$1	215	33	57	22.0664
CCAGGGCUUCAGGCCAAAAAGGAC	chr1:144879077-144879342(-)$1	265	180	204	16.5336
CACUAUAAAGAACAUGUAAUUAUA	chr20:52831827-52832078(+)$1	251	189	213	23.0985
GCUAGAUGUCAUCUUCUAUCAUUU	chr1:44443540-44443756(+)$1	216	30	54	22.3205
UAGCCAGAAUAUUUUUUAAUGGUU	chr17:30689781-30690074(+)$1	293	80	104	21.9593
AGAGACCCUGCUGAACACAAAAUU	chr7:100421711-100421966(-)$1	255	69	93	18.7567
CAUUCUCCAUGUCAUUCUAGGAGA	chr16:67228196-67228459(+)$1	263	84	108	22.8380
ACUCCAUGUCUGCUUCUUUCAUUU	chr16:57499759-57500013(+)$1	254	76	100	22.9541
UCAUUGAGGAAUAUCUCCAUCUCA	chr3:184045272-184045552(+)$1	280	185	209	21.6655
ACUGGGAAGAGAGCAAGGAUGACC	chr16:72130221-72130460(+)$1	239	76	100	21.7151
GUCGUCAGUAAUGCCUGGAAUGAU	chr2:153550948-153551193(-)$1	245	71	95	23.5012
UUUAGAGUUAAACAUGAAGUUUCU	chr9:114153929-114154201(-)$1	272	92	116	23.2774
GUCCCACUUCUACCCUUCUGGGGG	chr6:33272264-33272579(-)$1	315	246	270	23.1370
UCUUUUGACUUAUCACCUCUCACA	chr6:160467441-160467675(+)$1	234	93	117	23.1960
AGGAGAUAUUAUUUCUAUUUGUCU	chr2:70456039-70456346(-)$1	307	254	278	22.8393
UUUGCAGAAGGCUCUGGAGCUGCA	chr12:57969978-57970220(+)$1	242	66	90	23.4868
GUUCUAGUGCACCCGAAAGACAGG	chr6:158327026-158327299(+)$1	273	15	39	22.8818
GGUGGGGCAGCUGGACAAAAGAAC	chr21:33064592-33064864(-)$1	272	121	145	22.4936
CCCGCAAAGACCUGGAGAAGCUGG	chr13:111955229-111955491(+)$1	262	151	175	19.8581
UGGGGGUGAGUGGCUUAGAUGACU	chr20:45918807-45919045(-)$1	238	110	134	16.8970
GCAGUCUAUCAAGUGGUGUUUAGU	chr16:56435605-56435864(-)$1	259	34	58	22.8435
GGAGAGAGGAAAUUAUGCACUCCA	chr7:103301837-103302075(-)$1	238	180	204	23.2530
GCUUCCGUCAAGUCAUGCAUUGGA	chr2:114500296-114500569(-)$1	273	162	186	23.2774
AAUGAGGAUCAGGCAGAAUUCCUC	chr17:73058094-73058393(+)$1	299	153	177	23.0985
CCCCAGCUACAUCUUCCUUUCUGG	chr12:7283198-7283507(+)$1	309	284	308	18.3553
GGCUCCCGGCAGCCCUGAACGGGA	chr19:17439109-17439351(-)$1	242	149	173	24.1895
AGGAUCAGACAACCGGAAAUGAUC	chr21:37734370-37734623(+)$1	253	126	150	20.8253
AAGCAGCACCUUACUAAUUAAUGU	chr2:128522415-128522668(-)$1	253	76	100	19.8863
UUAGAAUUGUCAGUAAAAAAAAUC	chr1:193094139-193094373(+)$1	234	60	84	22.8089
UGCCUGGCUCCGUUAAUCACCAGC	chr1:26131485-26131763(+)$1	278	50	74	22.3293
UGGGCAAAAUUCAAGAGACGCCCA	chr5:176618869-176619115(+)$1	246	69	93	20.3578
UUAUUAUGACCCCAAUACCCAGGU	chr3:50098914-50099162(+)$1	248	44	68	22.7760
CAGGCGCGGUAGUGUUGGACGUUG	chr4:958922-959178(-)$1	256	96	120	23.5121
UCACACUGCCUGCUCCUUUGGGUG	chr3:183862565-183862799(+)$1	234	168	192	23.5357
GGCCUGCAGCAACCCCUCCCAGCA	chr5:149212342-149212610(+)$1	268	235	259	21.7932

#DB
((((((((............))))	chr2:26587586-26587841(+)$1	1	27	51	23.6617
((((((((.............)))	chr17:61666477-61666719(+)$1	1	81	105	22.7003
((.((((............)))).	chr15:69739084-69739371(+)$1	1	90	114	22.3856
((((((..............))))	chr12:49665926-49666172(+)$1	1	53	77	20.1907
((((((((...........)))))	chr12:123058813-123059098(+)$1	1	112	136	24.0413
(((((................)))	chr18:12535426-12535716(-)$1	1	91	115	19.7853
(((((((.............))))	chr1:24975238-24975491(+)$1	1	150	174	23.5012
.(((((((...........)))))	chr1:26873660-26873941(+)$1	1	55	79	23.7983
((((((((...........))).)	chr8:145153740-145154012(-)$1	1	78	102	22.7611
((((((((...........)))))	chr2:86707175-86707454(+)$1	1	153	177	24.0413
(..((((............)))).	chr11:70265867-70266135(+)$1	1	217	241	22.1075
((..((((...........)))).	chr1:145439686-145439931(+)$1	1	174	198	22.5747
...(((((...........)))))	chr17:26911349-26911585(-)$1	1	107	131	19.8309
.(((((.............)))))	chr15:63981760-63981975(-)$1	1	12	36	21.0521
((((((((............))))	chrX:64737809-64738170(-)$1	1	246	270	21.6655
(((((.((...........)).))	chr22:19906981-19907220(-)$1	1	7	31	22.6641
(((..(((...........)))..	chr16:67473078-67473378(-)$1	1	95	119	23.6520
..((((((...........)))))	chr2:178080377-178080592(+)$1	1	33	57	22.0664
(((((.(((..........))).)	chr1:144879077-144879342(-)$1	1	180	204	16.5336
(..(((((...........)))))	chr20:52831827-52832078(+)$1	1	189	213	23.0985
(.((((((...........)))))	chr1:44443540-44443756(+)$1	1	30	54	22.3205
.(((((.............)))))	chr17:30689781-30690074(+)$1	1	80	104	21.9593
((((..((................	chr7:100421711-100421966(-)$1	1	69	93	18.7567
)))(((((...........)))))	chr16:67228196-67228459(+)$1	1	84	108	22.8380
(....(((...........)))..	chr16:57499759-57500013(+)$1	1	76	100	22.9541
((((((((............))))	chr3:184045272-184045552(+)$1	1	185	209	21.6655
.((((..(...........)..))	chr16:72130221-72130460(+)$1	1	76	100	21.7151
(((((((.............))))	chr2:153550948-153551193(-)$1	1	71	95	23.5012
(((((((.............))))	chr9:114153929-114154201(-)$1	1	92	116	23.2774
(((((.(............)))))	chr6:33272264-33272579(-)$1	1	246	270	23.1370
((((((((...........))).)	chr6:160467441-160467675(+)$1	1	93	117	23.1960
((.(((((...........)))))	chr2:70456039-70456346(-)$1	1	254	278	22.8393
(((((((............)))))	chr12:57969978-57970220(+)$1	1	66	90	23.4868
(((((.((...........)))))	chr6:158327026-158327299(+)$1	1	15	39	22.8818
(((((..(............)..)	chr21:33064592-33064864(-)$1	1	121	145	22.4936
((.((..............)).))	chr13:111955229-111955491(+)$1	1	151	175	19.8581
(((((((.(..........).)))	chr20:45918807-45919045(-)$1	1	110	134	16.8970
(((..(((............))).	chr16:56435605-56435864(-)$1	1	34	58	22.8435
(((..(((...........)))..	chr7:103301837-103302075(-)$1	1	180	204	23.2530
(((((((.............))))	chr2:114500296-114500569(-)$1	1	162	186	23.2774
(..(((((...........)))))	chr17:73058094-73058393(+)$1	1	153	177	23.0985
..((((..............))))	chr12:7283198-7283507(+)$1	1	284	308	18.3553
((((((((...........)))))	chr19:17439109-17439351(-)$1	1	149	173	24.1895
.((((((............)))))	chr21:37734370-37734623(+)$1	1	126	150	20.8253
(((((................)))	chr2:128522415-128522668(-)$1	1	76	100	19.8863
..(((.((...........)).))	chr1:193094139-193094373(+)$1	1	60	84	22.8089
((.((((............)))).	chr1:26131485-26131763(+)$1	1	50	74	22.3293
(((((..............)))))	chr5:176618869-176619115(+)$1	1	69	93	20.3578
((((..((...........)).))	chr3:50098914-50099162(+)$1	1	44	68	22.7760
((((((((...........)).))	chr4:958922-959178(-)$1	1	96	120	23.5121
(((((((.............))))	chr3:183862565-183862799(+)$1	1	168	192	23.5357
(((((((..............)))	chr5:149212342-149212610(+)$1	1	235	259	21.7932

#PSSM
g : 0.13	= : 0.11	h : 0.11	e : 0.11	i : 0.09	c : 0.09	: : 0.09	f : 0.07	b : 0.03	d : 0.03	" : 0.03	[ : 0.01	# : 0.01	
g : 0.15	e : 0.15	h : 0.11	i : 0.09	= : 0.09	d : 0.07	c : 0.07	f : 0.05	! : 0.05	: : 0.03	# : 0.03	[ : 0.01	" : 0.01	
g : 0.15	e : 0.15	h : 0.11	i : 0.09	f : 0.09	[ : 0.07	d : 0.07	= : 0.07	! : 0.07	: : 0.01	b : 0.01	# : 0.01	c : 0.01	
e : 0.19	d : 0.13	g : 0.13	h : 0.11	i : 0.09	f : 0.09	= : 0.07	! : 0.07	b : 0.03	# : 0.01	c : 0.01	
e : 0.19	d : 0.15	g : 0.13	i : 0.09	f : 0.09	h : 0.09	! : 0.09	= : 0.07	# : 0.01	b : 0.01	c : 0.01	
g : 0.13	e : 0.13	c : 0.11	i : 0.09	d : 0.09	[ : 0.09	f : 0.07	! : 0.07	= : 0.05	y : 0.03	h : 0.03	w : 0.03	
c : 0.13	g : 0.11	b : 0.11	i : 0.09	e : 0.09	d : 0.07	w : 0.07	= : 0.05	f : 0.05	y : 0.03	v : 0.03	h : 0.03	! : 0.03	a : 0.01	
v : 0.13	c : 0.13	u : 0.11	b : 0.11	w : 0.09	e : 0.09	i : 0.07	y : 0.03	h : 0.03	f : 0.03	a : 0.03	g : 0.01	d : 0.01	[ : 0.01	= : 0.01	
t : 0.44	u : 0.21	v : 0.15	w : 0.09	y : 0.05	c : 0.01	a : 0.01	
t : 0.44	u : 0.21	v : 0.15	w : 0.09	y : 0.05	s : 0.03	
t : 0.44	u : 0.21	v : 0.15	w : 0.09	y : 0.05	s : 0.03	
t : 0.44	u : 0.21	v : 0.15	w : 0.09	y : 0.05	s : 0.03	
t : 0.44	u : 0.21	v : 0.15	w : 0.09	y : 0.05	s : 0.03	
t : 0.44	u : 0.21	v : 0.15	w : 0.09	y : 0.05	s : 0.03	
t : 0.44	u : 0.21	v : 0.15	w : 0.09	y : 0.05	s : 0.03	
t : 0.44	u : 0.21	v : 0.15	w : 0.09	y : 0.05	s : 0.03	
t : 0.44	u : 0.21	v : 0.15	w : 0.09	y : 0.05	s : 0.03	
t : 0.44	u : 0.21	v : 0.15	w : 0.09	y : 0.05	s : 0.03	
t : 0.44	u : 0.21	v : 0.15	w : 0.09	y : 0.05	s : 0.03	
e : 0.15	v : 0.11	c : 0.11	b : 0.11	u : 0.09	d : 0.07	w : 0.05	y : 0.05	f : 0.05	a : 0.05	i : 0.03	g : 0.03	= : 0.01	
e : 0.17	c : 0.13	b : 0.11	d : 0.09	i : 0.07	f : 0.07	g : 0.07	y : 0.05	= : 0.05	h : 0.03	v : 0.01	2 : 0.01	a : 0.01	] : 0.01	w : 0.01	
e : 0.19	c : 0.13	d : 0.11	g : 0.11	i : 0.09	f : 0.09	] : 0.09	= : 0.05	h : 0.03	2 : 0.03	y : 0.01	
e : 0.19	d : 0.13	g : 0.13	i : 0.09	f : 0.09	h : 0.07	2 : 0.07	= : 0.05	] : 0.05	c : 0.05	y : 0.01	
e : 0.19	2 : 0.13	g : 0.13	h : 0.11	i : 0.09	f : 0.09	d : 0.07	= : 0.07	c : 0.03	y : 0.01	] : 0.01	

#score	1148.733821538139
#seq	52
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_CDS_m1_run1.txt

#BEAR
eeeettttttttttteeeee]gg	chr16:89346897-89347146(-)$1	249	63	86	21.3946
d[cccssssssssssccc]dddd	chr11:71724492-71724737(-)$1	245	163	186	15.7072
eeeettttttttttteeeee]gg	chr16:89346985-89347212(-)$1	227	129	152	21.3946
[ccctttttttttttcccbb888	chr16:89348634-89348889(-)$1	255	34	57	20.0851
fffftttttttttttffffffbb	chr1:245026814-245027072(-)$1	258	10	33	19.6214
eeeeesssssssssseeeee]dd	chr11:62298859-62299092(-)$1	233	202	225	15.9190
[ddddssssssssssdddd]ccc	chr11:62494204-62494470(-)$1	266	108	131	16.0530
[bbvvvvvvvvvvvvvbb]bb]d	chr17:27008802-27009067(+)$1	265	159	182	18.2145
ddddtttttttttttdddd333d	chr5:71493934-71494170(+)$1	236	29	52	21.6192
[ccctttttttttttcccbbbb]	chr8:94747640-94747884(-)$1	244	51	74	20.7697
ddddvvvvvvvvvvvvvdddd22	chr17:17067319-17067572(+)$1	253	202	225	19.5738
eeeeesssssssssseeeee]cc	chr22:36684297-36684544(-)$1	247	195	218	16.0359
ddddwwwwwwwwwwwwwwdddd]	chr8:94752623-94752867(-)$1	244	170	193	19.0610
ddddtttttttttttdddd::EE	chr19:11169365-11169636(+)$1	271	66	89	18.8223
[ddddssssssssssdddd]eee	chr2:96957398-96957640(-)$1	242	167	190	15.8216
eeeettttttttttteeeee:::	chr16:89347086-89347350(-)$1	264	184	207	19.3818
[ccctttttttttttcccbbbb]	chr8:94747774-94748010(-)$1	236	177	200	20.7697
cccwwwwwwwwwwwwwwccc444	chr8:41791119-41791403(-)$1	284	96	119	19.0048
[ccctttttttttttccc]gggg	chr8:94745802-94746036(-)$1	234	139	162	21.3736
ddddvvvvvvvvvvvvvdddd::	chr8:94747717-94747931(-)$1	214	76	99	18.6509
eeeuuuuuuuuuuuueeeee]bb	chr16:89349833-89350150(-)$1	317	44	67	20.1922
hhhhvvvvvvvvvvvvvhhhhhh	chr16:89350307-89350602(-)$1	295	248	271	17.5282
eeeeuuuuuuuuuuuueeeee:c	chr16:31198007-31198228(+)$1	221	162	185	20.3088
ddddvvvvvvvvvvvvvdddd]d	chr8:144998225-144998463(-)$1	238	130	153	19.8330
fffftttttttttttffffff22	chr2:96964452-96964762(-)$1	310	45	68	19.6209
fffyyyyyyyyyyyyyyyyffff	chr10:120818643-120818914(-)$1	271	7	30	16.7654
eeeeesssssssssseeeee22d	chr11:62294489-62294767(-)$1	278	184	207	15.5767
ddddwwwwwwwwwwwwwwdddd]	chr8:94752512-94752787(-)$1	275	90	113	19.0610
[ccctttttttttttccc]ffff	chr8:94745836-94746125(-)$1	289	228	251	21.0463
eeeettttttttttteeeee:::	chr16:87735153-87735409(-)$1	256	233	256	19.3818
eeeeesssssssssseeeee]dd	chr9:134349890-134350156(+)$1	266	162	185	15.9190
b[bbuuuuuuuuuuuubb]bb22	chr16:89348258-89348499(-)$1	241	196	219	19.2233
dddduuuuuuuuuuuudddd]cc	chr1:16256388-16256638(+)$1	250	15	38	21.4044
cc[bbssssssssssbbcccccc	chr10:71144501-71144750(+)$1	249	25	48	14.9851
!!a[assssssssssa]a22eee	chr16:89350264-89350500(-)$1	236	185	208	15.3633
ccc[assssssssssaccc]eee	chr9:134351607-134351899(+)$1	292	195	218	16.1005
ddddtttttttttttdddd::EE	chr16:89347792-89348081(-)$1	289	212	235	18.8223
a[bbuuuuuuuuuuuubb]a]dd	chr8:94748356-94748602(-)$1	246	128	151	20.2449
ddddtttttttttttdddd::FF	chr11:62292083-62292350(-)$1	267	196	219	19.5833
a[bbuuuuuuuuuuuubb]a]dd	chr8:94748296-94748542(-)$1	246	68	91	20.2449
:ccctttttttttttccc:::::	chr16:89348751-89348973(-)$1	222	118	141	16.9031
a[bbtttttttttttbb]a22a]	chr16:89350125-89350439(-)$1	314	141	164	19.9412
ddddtttttttttttddddGGGG	chr8:94748093-94748357(-)$1	264	146	169	19.7437
ddddvvvvvvvvvvvvvddddee	chr19:11138457-11138727(+)$1	270	65	88	19.6729
eeeevvvvvvvvvvvvveeeeed	chr1:16256852-16257091(+)$1	239	39	62	19.5671
cc[bbssssssssssbbccc]bb	chr12:133353498-133353772(-)$1	274	219	242	14.9787
gggguuuuuuuuuuuuggggggg	chr1:16259147-16259392(+)$1	245	143	166	20.3815
ddddtttttttttttddddGGGG	chr8:94748157-94748470(-)$1	313	259	282	19.7437
[ddddssssssssssdddd]ddd	chr19:2270320-2270598(+)$1	278	86	109	15.8861
ccbbwwwwwwwwwwwwwwbb]cc	chr16:89348127-89348411(-)$1	284	71	94	18.4418
fffattttttttttta]ffffff	chr7:100732471-100732737(+)$1	266	188	211	20.1236

#otherMatches

#Seq PSSM
AGGCGCUUGCCUCUAGCCUGAUC	chr16:89346897-89347146(-)$1	249	63	86	21.3946
GGGCCAAGAAUUGAAGGCGUGGC	chr11:71724492-71724737(-)$1	245	163	186	15.7072
AGGCGCUUGCCUCUAGCCUGAUC	chr16:89346985-89347212(-)$1	227	129	152	21.3946
AGCCAAGAAAGAGAAGGCCGAGA	chr16:89348634-89348889(-)$1	255	34	57	20.0851
CCGCGGGGAAGAGCAGCGGCCCC	chr1:245026814-245027072(-)$1	258	10	33	19.6214
AGAUUAAAAUGCCCAAAUUUAGC	chr11:62298859-62299092(-)$1	233	202	225	15.9190
GCUUGAGGACGAGGACGAGGAGC	chr11:62494204-62494470(-)$1	266	108	131	16.0530
CGAGACAUGUACACCAUCUGCCA	chr17:27008802-27009067(+)$1	265	159	182	18.2145
UGUGCAAACACCUACCACAUUCC	chr5:71493934-71494170(+)$1	236	29	52	21.6192
AUUCAAAAUCUCCCAGAAGAACA	chr8:94747640-94747884(-)$1	244	51	74	20.7697
CUGAUUACACACCAGAUUCAGAC	chr17:17067319-17067572(+)$1	253	202	225	19.5738
CUCGGCCAACAAGAACCGGGACG	chr22:36684297-36684544(-)$1	247	195	218	16.0359
UAACGGAAAGGCACGGAGGUUGG	chr8:94752623-94752867(-)$1	244	170	193	19.0610
GAGGUAAGACCUGCUCCUCCCGU	chr19:11169365-11169636(+)$1	271	66	89	18.8223
CUGGGUUCUCUCAUUCCUACCUG	chr2:96957398-96957640(-)$1	242	167	190	15.8216
CAGCUACCUGGAGCCGCUGGACG	chr16:89347086-89347350(-)$1	264	184	207	19.3818
AUUCAAAAUCUCCCAGAAGAACA	chr8:94747774-94748010(-)$1	236	177	200	20.7697
AGAACAUAAUAGCCCUAUCUCCU	chr8:41791119-41791403(-)$1	284	96	119	19.0048
UCCAAAAAUAAAUUGUGGUUCAG	chr8:94745802-94746036(-)$1	234	139	162	21.3736
AGACAUUUUCGAAAACGGUCUCA	chr8:94747717-94747931(-)$1	214	76	99	18.6509
GCGGGACAGAAAGGACGCCCUGG	chr16:89349833-89350150(-)$1	317	44	67	20.1922
AGGGACAUGAAGAGCGACUCUGU	chr16:89350307-89350602(-)$1	295	248	271	17.5282
AGUUUCCAAAAUUCCCAACUCCC	chr16:31198007-31198228(+)$1	221	162	185	20.3088
CAGGUGGAGGAGGAGAUCCUGGC	chr8:144998225-144998463(-)$1	238	130	153	19.8330
UUACUUUUAUAGCUCGUAGCCUC	chr2:96964452-96964762(-)$1	310	45	68	19.6209
UCGUAUUGAUCACACUUCUCGGA	chr10:120818643-120818914(-)$1	271	7	30	16.7654
UUGAAAGGCCCUAAGUUCAAGAU	chr11:62294489-62294767(-)$1	278	184	207	15.5767
UAACGGAAAGGCACGGAGGUUGG	chr8:94752512-94752787(-)$1	275	90	113	19.0610
UCCAAAAAUAAAUUGUGGUUCAG	chr8:94745836-94746125(-)$1	289	228	251	21.0463
ACCCGGCUACACAUGGGGUGAGC	chr16:87735153-87735409(-)$1	256	233	256	19.3818
ACACCCAAAACCUCAGGUGUUCC	chr9:134349890-134350156(+)$1	266	162	185	15.9190
CAACGGGAAUGAUAAGGUAGCGC	chr16:89348258-89348499(-)$1	241	196	219	19.2233
UCCUAGCAAAAAGAAAAGGAUGG	chr1:16256388-16256638(+)$1	250	15	38	21.4044
GGCGAUCCUUUCUUUUCCCCUGC	chr10:71144501-71144750(+)$1	249	25	48	14.9851
GAGACGGUGAAGGAGGACAGCAA	chr16:89350264-89350500(-)$1	236	185	208	15.3633
CAGACAGAGCCGAAAGCUGGAGC	chr9:134351607-134351899(+)$1	292	195	218	16.1005
GGCCUGACCAGAGCCGGCCCACU	chr16:89347792-89348081(-)$1	289	212	235	18.8223
UGCCAUAAGUCGUUCAGGAGGGU	chr8:94748356-94748602(-)$1	246	128	151	20.2449
AGGUGAUUUGAAAGGACCUGCUC	chr11:62292083-62292350(-)$1	267	196	219	19.5833
UGCCAUAAGUCGUUCAGGAGGGU	chr8:94748296-94748542(-)$1	246	68	91	20.2449
AGCCAAGAAAGAGAAGGCCGAGA	chr16:89348751-89348973(-)$1	222	118	141	16.9031
CAGCAAGGAGAGGAGGCGGGACA	chr16:89350125-89350439(-)$1	314	141	164	19.9412
GGCCAAGAAAGACAAGGCCAUUG	chr8:94748093-94748357(-)$1	264	146	169	19.7437
AGCAACCAACCACAAAGUGCUGC	chr19:11138457-11138727(+)$1	270	65	88	19.6729
GUGAACACAAAUCCCACUCACCC	chr1:16256852-16257091(+)$1	239	39	62	19.5671
AAACCAAGAGGUGACGGUUCACG	chr12:133353498-133353772(-)$1	274	219	242	14.9787
GCCUCUGCUGCCUAUAAGGCAGA	chr1:16259147-16259392(+)$1	245	143	166	20.3815
GGCCAAGAAAGACAAGGCCAUUG	chr8:94748157-94748470(-)$1	313	259	282	19.7437
UGGGCCCCGUUUUUCGCCCCUGA	chr19:2270320-2270598(+)$1	278	86	109	15.8861
GUGCAGAGAAAGAAAAGGGCGAC	chr16:89348127-89348411(-)$1	284	71	94	18.4418
GGGCUACAUCUUUCUGACCCUUC	chr7:100732471-100732737(+)$1	266	188	211	20.1236

#DB
((((...........))))).))	chr16:89346897-89347146(-)$1	1	63	86	21.3946
(.(((..........))).))))	chr11:71724492-71724737(-)$1	1	163	186	15.7072
((((...........))))).))	chr16:89346985-89347212(-)$1	1	129	152	21.3946
.(((...........)))))...	chr16:89348634-89348889(-)$1	1	34	57	20.0851
((((...........))))))))	chr1:245026814-245027072(-)$1	1	10	33	19.6214
(((((..........))))).))	chr11:62298859-62299092(-)$1	1	202	225	15.9190
.((((..........)))).)))	chr11:62494204-62494470(-)$1	1	108	131	16.0530
.((.............)).)).)	chr17:27008802-27009067(+)$1	1	159	182	18.2145
((((...........))))...)	chr5:71493934-71494170(+)$1	1	29	52	21.6192
.(((...........))))))).	chr8:94747640-94747884(-)$1	1	51	74	20.7697
((((.............))))..	chr17:17067319-17067572(+)$1	1	202	225	19.5738
(((((..........))))).))	chr22:36684297-36684544(-)$1	1	195	218	16.0359
((((..............)))).	chr8:94752623-94752867(-)$1	1	170	193	19.0610
((((...........))))..((	chr19:11169365-11169636(+)$1	1	66	89	18.8223
.((((..........)))).)))	chr2:96957398-96957640(-)$1	1	167	190	15.8216
((((...........)))))...	chr16:89347086-89347350(-)$1	1	184	207	19.3818
.(((...........))))))).	chr8:94747774-94748010(-)$1	1	177	200	20.7697
(((..............)))...	chr8:41791119-41791403(-)$1	1	96	119	19.0048
.(((...........))).))))	chr8:94745802-94746036(-)$1	1	139	162	21.3736
((((.............))))..	chr8:94747717-94747931(-)$1	1	76	99	18.6509
(((............))))).))	chr16:89349833-89350150(-)$1	1	44	67	20.1922
((((.............))))))	chr16:89350307-89350602(-)$1	1	248	271	17.5282
((((............))))).(	chr16:31198007-31198228(+)$1	1	162	185	20.3088
((((.............)))).)	chr8:144998225-144998463(-)$1	1	130	153	19.8330
((((...........))))))..	chr2:96964452-96964762(-)$1	1	45	68	19.6209
(((................))))	chr10:120818643-120818914(-)$1	1	7	30	16.7654
(((((..........)))))..)	chr11:62294489-62294767(-)$1	1	184	207	15.5767
((((..............)))).	chr8:94752512-94752787(-)$1	1	90	113	19.0610
.(((...........))).))))	chr8:94745836-94746125(-)$1	1	228	251	21.0463
((((...........)))))...	chr16:87735153-87735409(-)$1	1	233	256	19.3818
(((((..........))))).))	chr9:134349890-134350156(+)$1	1	162	185	15.9190
(.((............)).))..	chr16:89348258-89348499(-)$1	1	196	219	19.2233
((((............)))).))	chr1:16256388-16256638(+)$1	1	15	38	21.4044
((.((..........))))))))	chr10:71144501-71144750(+)$1	1	25	48	14.9851
..(.(..........).)..)))	chr16:89350264-89350500(-)$1	1	185	208	15.3633
(((.(..........)))).)))	chr9:134351607-134351899(+)$1	1	195	218	16.1005
((((...........))))..))	chr16:89347792-89348081(-)$1	1	212	235	18.8223
(.((............)).).))	chr8:94748356-94748602(-)$1	1	128	151	20.2449
((((...........))))..))	chr11:62292083-62292350(-)$1	1	196	219	19.5833
(.((............)).).))	chr8:94748296-94748542(-)$1	1	68	91	20.2449
.(((...........))).....	chr16:89348751-89348973(-)$1	1	118	141	16.9031
(.((...........)).)..).	chr16:89350125-89350439(-)$1	1	141	164	19.9412
((((...........))))))))	chr8:94748093-94748357(-)$1	1	146	169	19.7437
((((.............))))((	chr19:11138457-11138727(+)$1	1	65	88	19.6729
((((.............)))))(	chr1:16256852-16257091(+)$1	1	39	62	19.5671
((.((..........))))).))	chr12:133353498-133353772(-)$1	1	219	242	14.9787
((((............)))))))	chr1:16259147-16259392(+)$1	1	143	166	20.3815
((((...........))))))))	chr8:94748157-94748470(-)$1	1	259	282	19.7437
.((((..........)))).)))	chr19:2270320-2270598(+)$1	1	86	109	15.8861
((((..............)).))	chr16:89348127-89348411(-)$1	1	71	94	18.4418
((((...........).))))))	chr7:100732471-100732737(+)$1	1	188	211	20.1236

#PSSM
d : 0.27	e : 0.21	[ : 0.17	c : 0.09	f : 0.07	a : 0.05	h : 0.01	b : 0.01	! : 0.01	: : 0.01	g : 0.01	
d : 0.31	e : 0.21	c : 0.21	[ : 0.09	f : 0.07	b : 0.01	h : 0.01	! : 0.01	g : 0.01	
d : 0.31	e : 0.21	c : 0.17	b : 0.11	f : 0.07	[ : 0.03	h : 0.01	a : 0.01	g : 0.01	
d : 0.31	e : 0.19	c : 0.13	b : 0.13	f : 0.03	[ : 0.03	v : 0.01	w : 0.01	u : 0.01	h : 0.01	y : 0.01	g : 0.01	a : 0.01	
t : 0.39	v : 0.13	u : 0.13	e : 0.07	w : 0.07	d : 0.05	b : 0.03	a : 0.03	c : 0.01	y : 0.01	
t : 0.39	s : 0.23	v : 0.13	u : 0.13	w : 0.07	y : 0.01	
t : 0.39	s : 0.23	v : 0.13	u : 0.13	w : 0.07	y : 0.01	
t : 0.39	s : 0.23	v : 0.13	u : 0.13	w : 0.07	y : 0.01	
t : 0.39	s : 0.23	v : 0.13	u : 0.13	w : 0.07	y : 0.01	
t : 0.39	s : 0.23	v : 0.13	u : 0.13	w : 0.07	y : 0.01	
t : 0.39	s : 0.23	v : 0.13	u : 0.13	w : 0.07	y : 0.01	
t : 0.39	s : 0.23	v : 0.13	u : 0.13	w : 0.07	y : 0.01	
t : 0.39	s : 0.23	v : 0.13	u : 0.13	w : 0.07	y : 0.01	
t : 0.39	s : 0.23	v : 0.13	u : 0.13	w : 0.07	y : 0.01	
t : 0.39	s : 0.23	v : 0.13	u : 0.13	w : 0.07	y : 0.01	
e : 0.17	d : 0.17	c : 0.13	v : 0.13	u : 0.11	w : 0.07	b : 0.05	a : 0.05	f : 0.03	y : 0.01	
e : 0.19	d : 0.19	c : 0.15	b : 0.13	v : 0.11	w : 0.07	f : 0.03	] : 0.03	y : 0.01	g : 0.01	
d : 0.27	e : 0.21	c : 0.21	b : 0.07	f : 0.05	w : 0.05	h : 0.01	y : 0.01	a : 0.01	] : 0.01	g : 0.01	
d : 0.31	e : 0.21	] : 0.13	b : 0.07	c : 0.07	f : 0.05	h : 0.01	y : 0.01	2 : 0.01	: : 0.01	a : 0.01	g : 0.01	
e : 0.21	d : 0.15	b : 0.11	f : 0.09	] : 0.07	: : 0.07	c : 0.05	g : 0.03	2 : 0.03	a : 0.03	G : 0.03	3 : 0.01	h : 0.01	
] : 0.21	d : 0.15	: : 0.11	f : 0.09	e : 0.09	b : 0.07	c : 0.03	g : 0.03	2 : 0.03	G : 0.03	8 : 0.01	3 : 0.01	4 : 0.01	h : 0.01	
d : 0.15	b : 0.09	c : 0.09	e : 0.09	: : 0.09	g : 0.07	2 : 0.07	f : 0.05	] : 0.03	E : 0.03	G : 0.03	8 : 0.01	3 : 0.01	4 : 0.01	h : 0.01	F : 0.01	a : 0.01	
d : 0.21	c : 0.11	] : 0.09	g : 0.07	e : 0.07	: : 0.07	b : 0.05	2 : 0.05	f : 0.05	E : 0.03	G : 0.03	8 : 0.01	4 : 0.01	h : 0.01	F : 0.01	

#score	955.8648559584472
#seq	51
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_UTR_m3_run2.txt

#BEAR
cc[aooooooa]cc	chr4:2070181-2070553(+)$1	372	259	273	10.1281
a[bboooooobb]a	chr16:23478541-23478844(-)$1	303	127	141	8.7677
[cccooooooccc]	chr16:68119393-68119671(+)$1	278	19	33	9.8458
ffffooooooffff	chr17:36884632-36884889(+)$1	257	200	214	8.8922
ee[aooooooa]ee	chr14:24035133-24035392(-)$1	259	21	35	10.4348
ddddoooooodddd	chr12:69218291-69218542(+)$1	251	188	202	11.0262
ddddoooooodddd	chr19:11664178-11664514(-)$1	336	158	172	11.0262
ddddoooooodddd	chr2:75787839-75788151(-)$1	312	240	254	11.0262
g[bboooooobbgg	chr2:54197788-54198046(-)$1	258	237	251	8.9913
ee[aooooooa]ee	chr22:38902004-38902249(-)$1	245	89	103	10.4348
hhhhoooooohhhh	chr6:349144-349423(+)$1	279	136	150	8.8606
eeeeooooooeeee	chr5:175308462-175308765(+)$1	303	71	85	10.2095
ddddoooooodddd	chr2:190648008-190648252(-)$1	244	13	27	11.0262
[ddddnnnnndddd	chr1:1822249-1822542(-)$1	293	126	140	5.7927
ddddoooooodddd	chr16:89980273-89980503(+)$1	230	128	142	11.0262
ddddoooooodddd	chr4:23796920-23797185(-)$1	265	30	44	11.0262
ddddoooooodddd	chr2:75787745-75788009(-)$1	264	98	112	11.0262
ffffooooooffff	chr2:135208253-135208536(+)$1	283	147	161	8.8922
ddddoooooodddd	chr2:38975944-38976216(-)$1	272	31	45	11.0262
ff[aooooooa]ff	chr9:138899055-138899277(-)$1	222	107	121	9.7321
ggggoooooogggg	chr12:56991292-56991567(-)$1	275	8	22	9.7453
hhhhoooooohhhh	chr16:15127067-15127357(+)$1	290	86	100	8.8606
eeeeooooooeeee	chr17:75496149-75496442(+)$1	293	230	244	10.2095
ddddoooooodddd	chr9:97848885-97849158(+)$1	273	3	17	11.0262
eeeeooooooeeee	chr6:31507998-31508221(-)$1	223	119	133	10.2095
ddddoooooodddd	chr3:49051298-49051599(+)$1	301	119	133	11.0262
bcccooooooccc:	chr20:61916150-61916384(+)$1	234	93	107	8.5758
eeeeooooooeeee	chr6:99848020-99848291(-)$1	271	198	212	10.2095
!!bboooooobb22	chr1:16891220-16891509(-)$1	289	130	144	8.4032
eeeeooooooeeee	chr11:124492743-124493223(+)$1	480	136	150	10.2095
ff[aooooooa]ff	chr9:138899077-138899307(-)$1	230	137	151	9.7321
ddddoooooodddd	chr5:179050506-179050764(-)$1	258	0	14	11.0262
ddddoooooodddd	chr17:39975427-39975697(+)$1	270	33	47	11.0262
dd[aooooooaddd	chr2:27720127-27720366(+)$1	239	43	57	10.8937
ddddoooooodddd	chr4:23796985-23797252(-)$1	267	162	176	11.0262
ggggoooooogggg	chr6:24720772-24721057(-)$1	285	218	232	9.7453

#otherMatches

#Seq PSSM
CCCGGGGAAGCAGG	chr4:2070181-2070553(+)$1	372	259	273	10.1281
uguguguguUCGGG	chr16:23478541-23478844(-)$1	303	127	141	8.7677
UUUCGGAACGGAAC	chr16:68119393-68119671(+)$1	278	19	33	9.8458
GUGCAUGCCAGCGC	chr17:36884632-36884889(+)$1	257	200	214	8.8922
AGGCUAUUCUGACU	chr14:24035133-24035392(-)$1	259	21	35	10.4348
UUUCUCUAAUGAAA	chr12:69218291-69218542(+)$1	251	188	202	11.0262
gugugugGCUGCAC	chr19:11664178-11664514(-)$1	336	158	172	11.0262
GCGCUUUGUCGUGU	chr2:75787839-75788151(-)$1	312	240	254	11.0262
UGCCCUACGCGGAG	chr2:54197788-54198046(-)$1	258	237	251	8.9913
CGGGAGACAGCGCG	chr22:38902004-38902249(-)$1	245	89	103	10.4348
gcaccuaagugugu	chr6:349144-349423(+)$1	279	136	150	8.8606
UUGAGAGAAUUCAG	chr5:175308462-175308765(+)$1	303	71	85	10.2095
GAGAAAUUCCUCUC	chr2:190648008-190648252(-)$1	244	13	27	11.0262
AGUGGAGCAGCCGC	chr1:1822249-1822542(-)$1	293	126	140	5.7927
guguggguaaacau	chr16:89980273-89980503(+)$1	230	128	142	11.0262
gugcgugugugcau	chr4:23796920-23797185(-)$1	265	30	44	11.0262
GCGCUUUGUCGUGU	chr2:75787745-75788009(-)$1	264	98	112	11.0262
guaugAGCCUGUGC	chr2:135208253-135208536(+)$1	283	147	161	8.8922
AGCCUCACCUGGCU	chr2:38975944-38976216(-)$1	272	31	45	11.0262
GAGCAUUUAGGGUU	chr9:138899055-138899277(-)$1	222	107	121	9.7321
CCAAACCCUCUUGG	chr12:56991292-56991567(-)$1	275	8	22	9.7453
GAAGAGCUGCCUUU	chr16:15127067-15127357(+)$1	290	86	100	8.8606
AAAACCAAGAUUUU	chr17:75496149-75496442(+)$1	293	230	244	10.2095
GCACACAGAGGUGC	chr9:97848885-97849158(+)$1	273	3	17	11.0262
GAAGGUAAAUUUUC	chr6:31507998-31508221(-)$1	223	119	133	10.2095
GGUUACUCCGGACC	chr3:49051298-49051599(+)$1	301	119	133	11.0262
CGAGAACGUCCUCA	chr20:61916150-61916384(+)$1	234	93	107	8.5758
UCUCAUUAUAGAGG	chr6:99848020-99848291(-)$1	271	198	212	10.2095
gggaagaagaucaa	chr1:16891220-16891509(-)$1	289	130	144	8.4032
UCCGCUAGCCCGGA	chr11:124492743-124493223(+)$1	480	136	150	10.2095
GAGCAUUUAGGGUU	chr9:138899077-138899307(-)$1	230	137	151	9.7321
UUGUGACGCAACGG	chr5:179050506-179050764(-)$1	258	0	14	11.0262
GGGACAGUGAUCCC	chr17:39975427-39975697(+)$1	270	33	47	11.0262
CUAGACAAAGCAGA	chr2:27720127-27720366(+)$1	239	43	57	10.8937
GUAUGUGUGGGUAC	chr4:23796985-23797252(-)$1	267	162	176	11.0262
GUUACUUUGCUGAC	chr6:24720772-24721057(-)$1	285	218	232	9.7453

#DB
((.(......).))	chr4:2070181-2070553(+)$1	1	259	273	10.1281
(.((......)).)	chr16:23478541-23478844(-)$1	1	127	141	8.7677
.(((......))).	chr16:68119393-68119671(+)$1	1	19	33	9.8458
((((......))))	chr17:36884632-36884889(+)$1	1	200	214	8.8922
((.(......).))	chr14:24035133-24035392(-)$1	1	21	35	10.4348
((((......))))	chr12:69218291-69218542(+)$1	1	188	202	11.0262
((((......))))	chr19:11664178-11664514(-)$1	1	158	172	11.0262
((((......))))	chr2:75787839-75788151(-)$1	1	240	254	11.0262
(.((......))))	chr2:54197788-54198046(-)$1	1	237	251	8.9913
((.(......).))	chr22:38902004-38902249(-)$1	1	89	103	10.4348
((((......))))	chr6:349144-349423(+)$1	1	136	150	8.8606
((((......))))	chr5:175308462-175308765(+)$1	1	71	85	10.2095
((((......))))	chr2:190648008-190648252(-)$1	1	13	27	11.0262
.((((.....))))	chr1:1822249-1822542(-)$1	1	126	140	5.7927
((((......))))	chr16:89980273-89980503(+)$1	1	128	142	11.0262
((((......))))	chr4:23796920-23797185(-)$1	1	30	44	11.0262
((((......))))	chr2:75787745-75788009(-)$1	1	98	112	11.0262
((((......))))	chr2:135208253-135208536(+)$1	1	147	161	8.8922
((((......))))	chr2:38975944-38976216(-)$1	1	31	45	11.0262
((.(......).))	chr9:138899055-138899277(-)$1	1	107	121	9.7321
((((......))))	chr12:56991292-56991567(-)$1	1	8	22	9.7453
((((......))))	chr16:15127067-15127357(+)$1	1	86	100	8.8606
((((......))))	chr17:75496149-75496442(+)$1	1	230	244	10.2095
((((......))))	chr9:97848885-97849158(+)$1	1	3	17	11.0262
((((......))))	chr6:31507998-31508221(-)$1	1	119	133	10.2095
((((......))))	chr3:49051298-49051599(+)$1	1	119	133	11.0262
)(((......))).	chr20:61916150-61916384(+)$1	1	93	107	8.5758
((((......))))	chr6:99848020-99848291(-)$1	1	198	212	10.2095
..((......))..	chr1:16891220-16891509(-)$1	1	130	144	8.4032
((((......))))	chr11:124492743-124493223(+)$1	1	136	150	10.2095
((.(......).))	chr9:138899077-138899307(-)$1	1	137	151	9.7321
((((......))))	chr5:179050506-179050764(-)$1	1	0	14	11.0262
((((......))))	chr17:39975427-39975697(+)$1	1	33	47	11.0262
((.(......))))	chr2:27720127-27720366(+)$1	1	43	57	10.8937
((((......))))	chr4:23796985-23797252(-)$1	1	162	176	11.0262
((((......))))	chr6:24720772-24721057(-)$1	1	218	232	9.7453

#PSSM
d : 0.38	e : 0.19	f : 0.11	g : 0.08	[ : 0.05	h : 0.05	c : 0.02	a : 0.02	b : 0.02	! : 0.02	
d : 0.41	e : 0.19	f : 0.11	c : 0.08	[ : 0.05	h : 0.05	g : 0.05	! : 0.02	
d : 0.38	[ : 0.16	e : 0.13	b : 0.08	c : 0.05	f : 0.05	h : 0.05	g : 0.05	
d : 0.38	a : 0.16	e : 0.13	b : 0.08	c : 0.05	f : 0.05	h : 0.05	g : 0.05	
o : 0.97	d : 0.02	
o : 0.97	n : 0.02	
o : 0.97	n : 0.02	
o : 0.97	n : 0.02	
o : 0.97	n : 0.02	
o : 0.97	n : 0.02	
d : 0.38	a : 0.16	e : 0.13	b : 0.08	c : 0.05	f : 0.05	h : 0.05	g : 0.05	
d : 0.41	] : 0.13	e : 0.13	b : 0.08	c : 0.05	f : 0.05	h : 0.05	g : 0.05	
d : 0.41	e : 0.19	f : 0.11	c : 0.08	g : 0.08	h : 0.05	] : 0.02	2 : 0.02	
d : 0.41	e : 0.19	f : 0.11	g : 0.08	h : 0.05	c : 0.02	a : 0.02	] : 0.02	: : 0.02	2 : 0.02	

#score	361.118513793742
#seq	36
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF536BUW_CSTF2T_transcript_m3_run2.txt

#BEAR
iiiiii[ffffffrrrrrrrrrffffffii	chr17:16347631-16347905(+)$1	274	133	163	13.0256
eeeee[cccddddpppppppdddd]ccc66	chr19:1410893-1411173(+)$1	280	166	196	13.9091
ccc!!gggggggqqqqqqqqggggggg333	chr11:65344335-65344572(+)$1	237	131	161	9.3576
=====!!ccc[bbpppppppbbccc22===	chr11:2405016-2405253(+)$1	237	52	82	15.3026
:bb[dddd!!cccpppppppccc22dddd]	chr19:2778546-2778805(-)$1	259	85	115	13.8831
===bb[ccc!!bbpppppppbb22ccc]bb	chr17:7141366-7141612(-)$1	246	119	149	13.7569
""ccc[bb[cccrrrrrrrrrccc]bb]cc	chr19:4123282-4123582(-)$1	300	170	200	13.2300
dddd[bb[eeeeepppppppeeeee333bb	chr21:45734664-45734982(+)$1	318	189	219	14.2616
f!!eeeee!!cccpppppppccc]eeeee2	chr9:27509124-27509495(-)$1	371	248	278	15.8422
!gggggggcccbbpppppppbb]ccc]ggg	chr16:4663559-4663789(-)$1	230	63	93	14.9018
!dddda[dddd[apppppppa]dddd]a>>	chr11:71934883-71935182(+)$1	299	216	246	14.1718
$a[bb[gggggggrrrrrrrrrggggggg]	chr2:240006115-240006416(-)$1	301	85	115	13.8016
dddbb[gggggggrrrrrrrrrggggggg]	chr3:69789059-69789319(+)$1	260	201	231	13.4823
:ffffff[eeeeepppppppeeeee]ffff	chr19:21628724-21628983(-)$1	259	69	99	13.5773
ffffff[ddddrrrrrrrrrdddd]fffff	chr14:69365446-69365725(-)$1	279	246	276	11.6874
$$$$eeeee[bbrrrrrrrrrbb]eeeee3	chr4:763927-764210(-)$1	283	47	77	12.1462
ee[dddd!!bbbbpppppppbb]bb4444d	chrX:152951485-152951786(-)$1	301	99	129	13.0205
ff!!eeeee[cccpppppppccc]eeeee8	chr20:55968331-55968591(+)$1	260	51	81	15.5017
dd!!ffffffcccpppppppccc]ffffff	chr17:1938243-1938501(+)$1	258	196	226	15.4097
bbb####eeeeeapppppppa]eeeeebb]	chr21:45734437-45734696(+)$1	259	128	158	15.0377
ii!!a[ffffff[apppppppa]ffffff]	chr22:50021825-50022071(-)$1	246	31	61	13.6993
CC:==========ppppppp==========	chr11:66413844-66414139(+)$1	295	142	172	13.9694
hhhhhhhheeeeepppppppeeeee22hhh	chr16:75276031-75276292(-)$1	261	81	111	12.9236
[eeeeeddddcccrrrrrrrrrccc]dddd	chr19:41110675-41110932(+)$1	257	6	36	12.2613
:ggggggg[ddddrrrrrrrrrdddd333g	chr17:79386207-79386479(+)$1	272	21	51	12.7479
:::eeeee[ddddpppppppdddd]eeeee	chr10:72974010-72974256(+)$1	246	97	127	12.3104
ddiiiiiiiii[apppppppa]iiiiiiii	chr13:114144568-114144828(-)$1	260	184	214	15.9642
:ggggggga[cccrrrrrrrrrccc]a]gg	chr4:60089-60333(+)$1	244	203	233	13.4856
eeee####eeeeepppppppeeeeeeeeee	chr9:137220081-137220329(+)$1	248	28	58	14.6853
dd!!a[gggggggpppppppggggggg]a2	chr19:18548047-18548289(-)$1	242	201	231	16.4787
::::dddd!!cccpppppppccc333dddd	chr3:128214809-128215062(+)$1	253	0	30	11.7771
eeeeee!!a[cccpppppppccca22eeee	chr16:89005696-89005947(-)$1	251	111	141	15.0454
ddd"""gggggggpppppppggggggg]dd	chr20:55979332-55979571(+)$1	239	78	108	15.6945
hh"""bb[ccc[apppppppa]ccc]bb]h	chr22:20131299-20131561(+)$1	262	46	76	14.6603
b[ccchhhhhhhhppppppphhhhhhhh]c	chr17:17727233-17727496(-)$1	263	165	195	12.4566
dd[==========rrrrrrrrr========	chr8:74658223-74658495(-)$1	272	150	180	14.5622
C:ccc[ccc[bbrrrrrrrrrbb]cccccc	chr1:1181120-1181406(-)$1	286	30	60	11.1499
cc!!dddd[ddddpppppppdddd]ddddc	chr12:122238016-122238276(-)$1	260	76	106	14.6936
ccc[a"""ddddrrrrrrrrrdddd333a]	chr11:637707-638104(+)$1	397	7	37	14.1336
ffff!!eeeeerrrrrrrrreeeeefffff	chr19:1883705-1883961(-)$1	256	48	78	12.3886
dd[eeeee!!cccpppppppccc]eeeee]	chr4:52710713-52710939(+)$1	226	180	210	16.0731
ffff"""ffffffpppppppffffff22ff	chr19:2046721-2046969(-)$1	248	138	168	14.3564
gggga####bbrrrrrrrrrbb4444a]gg	chr10:126479687-126479974(-)$1	287	129	159	12.4850
:a[eeeeeeeeeerrrrrrrrreeeee]ee	chr2:242447570-242447826(-)$1	256	221	251	12.4637
cccccc[a!!cccpppppppccc22a]ccc	chr17:80054783-80055051(-)$1	268	177	207	15.6911
dd!!eeeeeddddpppppppdddd]eeeee	chr16:85648082-85648330(+)$1	248	200	230	15.1107
[a####gggggggrrrrrrrrrggggggg2	chr19:11071762-11072091(+)$1	329	48	78	14.2530
b[ccc[eeeeerrrrrrrrreeeee]ccc]	chr19:1017644-1017936(-)$1	292	165	195	13.2730
bb[gggggggcccqqqqqqqqccc]ggggg	chr9:123630786-123631077(-)$1	291	158	188	9.3017
b"""a[ffffffrrrrrrrrrffffff]a3	chr17:7310010-7310287(+)$1	277	211	241	13.8645
dd[bb[eeeeerrrrrrrrreeeee22bb]	chr19:19640186-19640535(+)$1	349	114	144	12.5418
cc!!a[a[ccc[apppppppa]ccc]a]a]	chr5:81045686-81045934(-)$1	248	76	106	17.1544
cc[a"""ffffffpppppppffffff333a	chr1:183442474-183442775(+)$1	301	56	86	15.8728
c[a[bb[bbddddpppppppdddd]bb]bb	chr5:139039503-139039763(+)$1	260	46	76	13.6613
ee####bb[ddddpppppppdddd]bb333	chr10:126848641-126848877(-)$1	236	134	164	15.0336
cccdddd"""cccpppppppcccddddbb[	chr4:1187805-1188088(-)$1	283	86	116	14.0072
d####a[ffffffpppppppffffff]add	chr10:135278347-135278583(+)$1	236	57	87	15.0924

#otherMatches

#Seq PSSM
UAGUAGGCGAGUGAGGAAUAAACAUUUGCU	chr17:16347631-16347905(+)$1	274	133	163	13.0256
CUUGUACCUGUGCAGAGUGAGCACAAGGCA	chr19:1410893-1411173(+)$1	280	166	196	13.9091
CCUGAGGACCUAGGAGGUUGUGGGUCCGGG	chr11:65344335-65344572(+)$1	237	131	161	9.3576
GGGGUAAGGUAUGGGUGGGGCGACCAGAUC	chr11:2405016-2405253(+)$1	237	52	82	15.3026
ccuccAUAGUUUGUGAAUUUCAAUGUGUGC	chr19:2778546-2778805(-)$1	259	85	115	13.8831
CGCGUGCUCGAGUAGAAGGGGCCGGAGGGC	chr17:7141366-7141612(-)$1	246	119	149	13.7569
AGUAGUGAAGUUGGGGUGAAGGAUGUCUCU	chr19:4123282-4123582(-)$1	300	170	200	13.2300
CCAUCUGUGUGGACACUGGUUCCACCUCCG	chr21:45734664-45734982(+)$1	318	189	219	14.2616
UAAGGCUUGGCAUUGGAACUAUGAAAGUUA	chr9:27509124-27509495(-)$1	371	248	278	15.8422
CACCGACCCCAGGAUUAACCCCAUGGUGGU	chr16:4663559-4663789(-)$1	230	63	93	14.9018
AGGCCCGGCCUGCGGGUGUGGGGGGUGGUG	chr11:71934883-71935182(+)$1	299	216	246	14.1718
ucucugucuguggugugugugucugugggg	chr2:240006115-240006416(-)$1	301	85	115	13.8016
GGGUUGAGGGCUCGGAGAGGGAGAGCUUUG	chr3:69789059-69789319(+)$1	260	201	231	13.4823
AGAAUCACAAAUAAUGCUUCUGUUUAUGAU	chr19:21628724-21628983(-)$1	259	69	99	13.5773
GGUCACAGCUGGGUUGGUGGUAGUGGUGGU	chr14:69365446-69365725(-)$1	279	246	276	11.6874
AGCAGGGUGACAGUUUACAAAUGCCGCCUG	chr4:763927-764210(-)$1	283	47	77	12.1462
GGGUUCCGAGGCCAGGGACAGGAUCAUGAG	chrX:152951485-152951786(-)$1	301	99	129	13.0205
CUUACGGGUGAGUGGACAUGGCUGGCUUGG	chr20:55968331-55968591(+)$1	260	51	81	15.5017
AGCCAGGCUCCACGCCCCAAGUGUGAGUCU	chr17:1938243-1938501(+)$1	258	196	226	15.4097
GCCUAGAACAGGCUGACACUGCCCUGUGGA	chr21:45734437-45734696(+)$1	259	128	158	15.0377
GGGGUGUCCGGUGCAGUCAGGGGGCCGGGG	chr22:50021825-50022071(-)$1	246	31	61	13.6993
UCAUUUGUACCUUGAAGGGGAGGGUAUAAA	chr11:66413844-66414139(+)$1	295	142	172	13.9694
GUUCAUUUGUCCGGGGAAGAUGGAUGUGAA	chr16:75276031-75276292(-)$1	261	81	111	12.9236
gaggcugcagagccauaaucacgcuacugc	chr19:41110675-41110932(+)$1	257	6	36	12.2613
AUGCCAUCCUUCUAACAAGUUGAGAGUUUG	chr17:79386207-79386479(+)$1	272	21	51	12.7479
UUUUUCUGGUGCAAGUCCUGUGCAGUAGAG	chr10:72974010-72974256(+)$1	246	97	127	12.3104
GGGCAGUCGAGGCGGGCGAGGGCUCGGCUG	chr13:114144568-114144828(-)$1	260	184	214	15.9642
AUAAUGGGCUGCAUAAUCUGACUGCUGUUC	chr4:60089-60333(+)$1	244	203	233	13.4856
GGUUGCACUUCAGCUGAGUACUGAGAACCG	chr9:137220081-137220329(+)$1	248	28	58	14.6853
CGGAGGUCUCAGGGGAGGGGCCUGGGGGCA	chr19:18548047-18548289(-)$1	242	201	231	16.4787
GAAAUGGAGAUUCAGUGACAGAAAGAUCCA	chr3:128214809-128215062(+)$1	253	0	30	11.7771
GGAAGAGAGUGUCGCAUCAGGAUCAGUCUU	chr16:89005696-89005947(-)$1	251	111	141	15.0454
CGGGGAGAUGUCUGAGGCAGGGGCAUCACU	chr20:55979332-55979571(+)$1	239	78	108	15.6945
CUCUUGGCUGGGCACUCAUAGGUCAUCCCA	chr22:20131299-20131561(+)$1	262	46	76	14.6603
ACAGAGUUCUGGUGUGUUGGGCCAGGACUU	chr17:17727233-17727496(-)$1	263	165	195	12.4566
UGUGGCUGUUACGAACUCCUACCGUGAUGG	chr8:74658223-74658495(-)$1	272	150	180	14.5622
CCGGGCGUCCUCACAAAGACAGAAGGCCCC	chr1:1181120-1181406(-)$1	286	30	60	11.1499
CCAGCCCAGCUCUCCAGGCAGGAGGUGGGG	chr12:122238016-122238276(-)$1	260	76	106	14.6936
GGGCGCUGCGCCUUGUCCCUCGGCGAUACA	chr11:637707-638104(+)$1	397	7	37	14.1336
gccugagccggaaugcggaccuggcaggcu	chr19:1883705-1883961(-)$1	256	48	78	12.3886
UUGUCUCCAGUCAACGGGUAUGAAGGGGAA	chr4:52710713-52710939(+)$1	226	180	210	16.0731
AGCGGGGACGGAGUUGAUUUUUCCGUAAUG	chr19:2046721-2046969(-)$1	248	138	168	14.3564
GAGGCGGGAGCGGGGAGAUAGUGGGGGAUC	chr10:126479687-126479974(-)$1	287	129	159	12.4850
AGGUCGGUCUCAGAUGACUGAACUGGGCAC	chr2:242447570-242447826(-)$1	256	221	251	12.4637
GUGCUGAGUACCCCCCUCUAGGGCUCCCAG	chr17:80054783-80055051(-)$1	268	177	207	15.6911
GGAUGCCAGCCGGAGUUGAGUCGGUUUGGC	chr16:85648082-85648330(+)$1	248	200	230	15.1107
gggggaggcgccgggAAGUCGACGGCGCCG	chr19:11071762-11072091(+)$1	329	48	78	14.2530
GGUCUGUGGGUCAGUCAAAUACCCAGAGAG	chr19:1017644-1017936(-)$1	292	165	195	13.2730
CCGGCUCCGCGUGGCAUCUAGCACUGUGGA	chr9:123630786-123631077(-)$1	291	158	188	9.3017
CUGGAGGGGGGCAGUCAGUAGGCUCCUGUG	chr17:7310010-7310287(+)$1	277	211	241	13.8645
ACGCAGGGCCUGUUUGCCAGAGGUUGGUGA	chr19:19640186-19640535(+)$1	349	114	144	12.5418
ccggcggggcgguggucgggggcgcgcggA	chr5:81045686-81045934(-)$1	248	76	106	17.1544
UAGAGUGACACAUGGGAAUAGUGUGUGUGU	chr1:183442474-183442775(+)$1	301	56	86	15.8728
UGCUCGAGCUGUCAGAGACAGACAGGCAUG	chr5:139039503-139039763(+)$1	260	46	76	13.6613
GGCAUCCGAGGACAUCUUUGGUCCGUGCCC	chr10:126848641-126848877(-)$1	236	134	164	15.0336
GAGCCCAUUUGCCGUCGUGGGGCUGGGGGU	chr4:1187805-1188088(-)$1	283	86	116	14.0072
UUCGAGAGCAGGUCUGGAUUACCUGUGCAG	chr10:135278347-135278583(+)$1	236	57	87	15.0924

#DB
((((((.((((((.........))))))))	chr17:16347631-16347905(+)$1	1	133	163	13.0256
(((((.(((((((.......)))).)))..	chr19:1410893-1411173(+)$1	1	166	196	13.9091
(((..(((((((........)))))))...	chr11:65344335-65344572(+)$1	1	131	161	9.3576
(((((..(((.((.......)))))..)))	chr11:2405016-2405253(+)$1	1	52	82	15.3026
.((.((((..(((.......)))..)))).	chr19:2778546-2778805(-)$1	1	85	115	13.8831
(((((.(((..((.......))..))).))	chr17:7141366-7141612(-)$1	1	119	149	13.7569
..(((.((.(((.........))).)).))	chr19:4123282-4123582(-)$1	1	170	200	13.2300
((((.((.(((((.......)))))...))	chr21:45734664-45734982(+)$1	1	189	219	14.2616
(..(((((..(((.......))).))))).	chr9:27509124-27509495(-)$1	1	248	278	15.8422
.((((((((((((.......)).))).)))	chr16:4663559-4663789(-)$1	1	63	93	14.9018
.(((((.((((.(.......).)))).)..	chr11:71934883-71935182(+)$1	1	216	246	14.1718
.(.((.(((((((.........))))))).	chr2:240006115-240006416(-)$1	1	85	115	13.8016
)))((.(((((((.........))))))).	chr3:69789059-69789319(+)$1	1	201	231	13.4823
.((((((.(((((.......))))).))))	chr19:21628724-21628983(-)$1	1	69	99	13.5773
((((((.((((.........)))).)))))	chr14:69365446-69365725(-)$1	1	246	276	11.6874
....(((((.((.........)).))))).	chr4:763927-764210(-)$1	1	47	77	12.1462
((.((((..((((.......)).))....)	chrX:152951485-152951786(-)$1	1	99	129	13.0205
((..(((((.(((.......))).))))).	chr20:55968331-55968591(+)$1	1	51	81	15.5017
((..(((((((((.......))).))))))	chr17:1938243-1938501(+)$1	1	196	226	15.4097
(((....((((((.......).))))))).	chr21:45734437-45734696(+)$1	1	128	158	15.0377
((..(.((((((.(.......).)))))).	chr22:50021825-50022071(-)$1	1	31	61	13.6993
((.((((((((((.......))))))))))	chr11:66413844-66414139(+)$1	1	142	172	13.9694
(((((((((((((.......)))))..)))	chr16:75276031-75276292(-)$1	1	81	111	12.9236
.((((((((((((.........))).))))	chr19:41110675-41110932(+)$1	1	6	36	12.2613
.(((((((.((((.........))))...)	chr17:79386207-79386479(+)$1	1	21	51	12.7479
...(((((.((((.......)))).)))))	chr10:72974010-72974256(+)$1	1	97	127	12.3104
))(((((((((.(.......).))))))))	chr13:114144568-114144828(-)$1	1	184	214	15.9642
.((((((((.(((.........))).).))	chr4:60089-60333(+)$1	1	203	233	13.4856
((((....(((((.......))))))))))	chr9:137220081-137220329(+)$1	1	28	58	14.6853
((..(.(((((((.......))))))).).	chr19:18548047-18548289(-)$1	1	201	231	16.4787
....((((..(((.......)))...))))	chr3:128214809-128215062(+)$1	1	0	30	11.7771
)(((((..(.(((.......))))..))))	chr16:89005696-89005947(-)$1	1	111	141	15.0454
(((...(((((((.......))))))).))	chr20:55979332-55979571(+)$1	1	78	108	15.6945
((...((.(((.(.......).))).)).)	chr22:20131299-20131561(+)$1	1	46	76	14.6603
(.(((((((((((.......)))))))).)	chr17:17727233-17727496(-)$1	1	165	195	12.4566
((.((((((((((.........))))))))	chr8:74658223-74658495(-)$1	1	150	180	14.5622
(.(((.(((.((.........)).))))))	chr1:1181120-1181406(-)$1	1	30	60	11.1499
((..((((.((((.......)))).)))))	chr12:122238016-122238276(-)$1	1	76	106	14.6936
(((.(...((((.........))))...).	chr11:637707-638104(+)$1	1	7	37	14.1336
((((..(((((.........))))))))))	chr19:1883705-1883961(-)$1	1	48	78	12.3886
((.(((((..(((.......))).))))).	chr4:52710713-52710939(+)$1	1	180	210	16.0731
((((...((((((.......))))))..))	chr19:2046721-2046969(-)$1	1	138	168	14.3564
(((((....((.........))....).))	chr10:126479687-126479974(-)$1	1	129	159	12.4850
.(.((((((((((.........))))).))	chr2:242447570-242447826(-)$1	1	221	251	12.4637
((((((.(..(((.......)))..).)))	chr17:80054783-80055051(-)$1	1	177	207	15.6911
((..(((((((((.......)))).)))))	chr16:85648082-85648330(+)$1	1	200	230	15.1107
.(....(((((((.........))))))).	chr19:11071762-11072091(+)$1	1	48	78	14.2530
(.(((.(((((.........))))).))).	chr19:1017644-1017936(-)$1	1	165	195	13.2730
((.((((((((((........))).)))))	chr9:123630786-123631077(-)$1	1	158	188	9.3017
(...(.((((((.........)))))).).	chr17:7310010-7310287(+)$1	1	211	241	13.8645
((.((.(((((.........)))))..)).	chr19:19640186-19640535(+)$1	1	114	144	12.5418
((..(.(.(((.(.......).))).).).	chr5:81045686-81045934(-)$1	1	76	106	17.1544
((.(...((((((.......))))))...)	chr1:183442474-183442775(+)$1	1	56	86	15.8728
(.(.((.((((((.......)))).)).))	chr5:139039503-139039763(+)$1	1	46	76	13.6613
((....((.((((.......)))).))...	chr10:126848641-126848877(-)$1	1	134	164	15.0336
)))((((...(((.......)))))))((.	chr4:1187805-1188088(-)$1	1	86	116	14.0072
(....(.((((((.......)))))).)))	chr10:135278347-135278583(+)$1	1	57	87	15.0924

#PSSM
d : 0.19	c : 0.14	: : 0.12	e : 0.08	f : 0.08	b : 0.08	i : 0.03	= : 0.03	! : 0.03	$ : 0.03	C : 0.03	h : 0.03	[ : 0.03	" : 0.01	g : 0.01	
d : 0.19	c : 0.12	e : 0.10	f : 0.08	g : 0.07	b : 0.05	a : 0.05	: : 0.05	[ : 0.05	i : 0.03	= : 0.03	" : 0.03	h : 0.03	! : 0.01	$ : 0.01	C : 0.01	# : 0.01	
c : 0.14	! : 0.14	[ : 0.14	e : 0.07	d : 0.07	g : 0.07	f : 0.07	: : 0.05	# : 0.05	i : 0.03	= : 0.03	b : 0.03	" : 0.03	$ : 0.01	h : 0.01	a : 0.01	
e : 0.14	! : 0.14	c : 0.08	g : 0.08	b : 0.07	d : 0.07	f : 0.07	# : 0.07	= : 0.05	[ : 0.05	" : 0.05	i : 0.03	$ : 0.01	h : 0.01	: : 0.01	a : 0.01	
e : 0.17	d : 0.10	a : 0.10	b : 0.08	c : 0.08	# : 0.08	g : 0.07	" : 0.07	= : 0.05	f : 0.05	i : 0.03	! : 0.03	[ : 0.01	h : 0.01	
[ : 0.21	e : 0.15	g : 0.08	d : 0.08	# : 0.08	" : 0.07	b : 0.05	f : 0.05	i : 0.03	! : 0.03	a : 0.03	= : 0.03	h : 0.03	c : 0.01	
g : 0.17	e : 0.17	[ : 0.10	d : 0.10	b : 0.07	f : 0.07	c : 0.05	# : 0.05	" : 0.05	! : 0.03	= : 0.03	h : 0.03	i : 0.01	a : 0.01	
e : 0.19	g : 0.17	f : 0.12	d : 0.10	c : 0.07	[ : 0.07	b : 0.05	! : 0.03	= : 0.03	h : 0.03	# : 0.03	" : 0.03	i : 0.01	a : 0.01	
e : 0.21	f : 0.12	c : 0.12	g : 0.12	! : 0.10	[ : 0.08	d : 0.07	= : 0.03	a : 0.03	i : 0.01	h : 0.01	# : 0.01	b : 0.01	" : 0.01	
d : 0.19	e : 0.15	f : 0.12	g : 0.12	! : 0.10	c : 0.08	[ : 0.08	b : 0.03	= : 0.03	i : 0.01	h : 0.01	" : 0.01	
c : 0.28	d : 0.17	e : 0.15	f : 0.10	g : 0.10	b : 0.07	= : 0.03	[ : 0.01	! : 0.01	i : 0.01	h : 0.01	
c : 0.22	d : 0.14	f : 0.10	g : 0.10	b : 0.10	e : 0.10	r : 0.08	[ : 0.07	= : 0.03	h : 0.01	
c : 0.21	r : 0.17	d : 0.12	e : 0.08	a : 0.08	g : 0.08	f : 0.07	b : 0.07	= : 0.03	q : 0.01	[ : 0.01	h : 0.01	
p : 0.61	r : 0.33	q : 0.03	a : 0.01	
p : 0.63	r : 0.33	q : 0.03	
p : 0.63	r : 0.33	q : 0.03	
p : 0.63	r : 0.33	q : 0.03	
p : 0.63	r : 0.33	q : 0.03	
p : 0.63	r : 0.33	q : 0.03	
p : 0.63	r : 0.33	q : 0.03	
r : 0.24	c : 0.15	d : 0.12	e : 0.12	b : 0.08	a : 0.08	g : 0.05	f : 0.05	p : 0.01	= : 0.01	h : 0.01	q : 0.01	
c : 0.19	r : 0.15	d : 0.14	b : 0.12	e : 0.12	] : 0.08	f : 0.07	g : 0.05	a : 0.01	= : 0.01	h : 0.01	
c : 0.28	d : 0.17	e : 0.15	g : 0.10	f : 0.08	] : 0.05	b : 0.03	= : 0.03	2 : 0.01	i : 0.01	h : 0.01	4 : 0.01	
d : 0.19	e : 0.15	c : 0.14	f : 0.10	g : 0.10	] : 0.10	2 : 0.05	= : 0.03	b : 0.01	i : 0.01	3 : 0.01	a : 0.01	h : 0.01	4 : 0.01	
e : 0.22	] : 0.15	c : 0.14	f : 0.12	g : 0.10	d : 0.07	2 : 0.05	= : 0.03	b : 0.01	i : 0.01	3 : 0.01	h : 0.01	4 : 0.01	
f : 0.15	e : 0.15	g : 0.12	] : 0.10	d : 0.08	c : 0.07	2 : 0.07	b : 0.05	3 : 0.05	4 : 0.03	= : 0.03	i : 0.01	h : 0.01	a : 0.01	
e : 0.17	f : 0.12	g : 0.12	d : 0.08	c : 0.07	2 : 0.07	b : 0.07	3 : 0.07	] : 0.07	a : 0.05	= : 0.03	4 : 0.01	i : 0.01	h : 0.01	
] : 0.17	e : 0.14	f : 0.10	3 : 0.10	g : 0.08	c : 0.07	d : 0.07	b : 0.07	= : 0.05	a : 0.03	h : 0.03	4 : 0.01	i : 0.01	2 : 0.01	
e : 0.15	g : 0.12	d : 0.10	b : 0.10	f : 0.10	3 : 0.07	c : 0.07	a : 0.07	= : 0.05	i : 0.03	] : 0.03	6 : 0.01	> : 0.01	4 : 0.01	h : 0.01	
] : 0.17	c : 0.08	g : 0.08	f : 0.08	d : 0.08	e : 0.08	3 : 0.07	= : 0.05	b : 0.05	2 : 0.05	i : 0.03	h : 0.03	6 : 0.01	> : 0.01	8 : 0.01	a : 0.01	[ : 0.01	

#score	790.6327772204191
#seq	57
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_CDS_m2_run1.txt

#BEAR
fffeeeee[cccmmmmccceeeee>>>>>>>>>>>>>fff	chrM:14366-14595(-)$1	229	30	70	29.1869
d[ffffff!!bbmmmmbb22ffffffdddd55555hhhhh	chr2:216232486-216232745(-)$1	259	146	186	27.8465

#otherMatches

#Seq PSSM
UGGUCGGGUGUGUUAUUAUUCUGAAUUUUGGGGGAGGUUA	chrM:14366-14595(-)$1	229	30	70	29.1869
AUGUGAUUCAUCUAGUGAGUAGUUGCUUUGUCCAUCCACU	chr2:216232486-216232745(-)$1	259	146	186	27.8465

#DB
((((((((.(((....)))))))).............)))	chrM:14366-14595(-)$1	1	30	70	29.1869
(.((((((..((....))..)))))))))).....)))))	chr2:216232486-216232745(-)$1	1	146	186	27.8465

#PSSM
f : 0.50	d : 0.50	
f : 0.50	[ : 0.50	
f : 1.00	
e : 0.50	f : 0.50	
e : 0.50	f : 0.50	
e : 0.50	f : 0.50	
e : 0.50	f : 0.50	
e : 0.50	f : 0.50	
[ : 0.50	! : 0.50	
c : 0.50	! : 0.50	
c : 0.50	b : 0.50	
c : 0.50	b : 0.50	
m : 1.00	
m : 1.00	
m : 1.00	
m : 1.00	
c : 0.50	b : 0.50	
c : 0.50	b : 0.50	
c : 0.50	2 : 0.50	
e : 0.50	2 : 0.50	
e : 0.50	f : 0.50	
e : 0.50	f : 0.50	
e : 0.50	f : 0.50	
e : 0.50	f : 0.50	
> : 0.50	f : 0.50	
> : 0.50	f : 0.50	
> : 0.50	d : 0.50	
> : 0.50	d : 0.50	
> : 0.50	d : 0.50	
> : 0.50	d : 0.50	
> : 0.50	5 : 0.50	
> : 0.50	5 : 0.50	
> : 0.50	5 : 0.50	
> : 0.50	5 : 0.50	
> : 0.50	5 : 0.50	
> : 0.50	h : 0.50	
> : 0.50	h : 0.50	
f : 0.50	h : 0.50	
f : 0.50	h : 0.50	
f : 0.50	h : 0.50	

#score	57.03342590325
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_UTR_m2_run1.txt

#BEAR
"cccooooooccc2	chr6:111216018-111216314(+)$1	296	186	200	9.9633
ff[aooooooa]ff	chr7:66420998-66421301(+)$1	303	274	288	9.5079
e[bboooooobb]e	chr19:1270712-1271009(+)$1	297	93	107	9.1358
ddddoooooodddd	chr7:26229787-26230067(-)$1	280	106	120	11.3668
eeeeooooooeeee	chr1:241796464-241796727(-)$1	263	1	15	10.5729
ddddoooooodddd	chr5:86687606-86687879(-)$1	273	148	162	11.3668
ddddoooooodddd	chr17:27583281-27583567(-)$1	286	185	199	11.3668
eeeeooooooeeee	chr4:95585567-95585840(+)$1	273	175	189	10.5729
cc[aooooooa]cc	chr12:22841057-22841308(+)$1	251	174	188	9.8662
eeeeooooooeeee	chr8:126034268-126034492(+)$1	224	166	180	10.5729
ddddoooooodddd	chrX:110931139-110931398(+)$1	259	11	25	11.3668
"cccooooooccc5	chr1:192989370-192989667(-)$1	297	210	224	9.3404
ggggoooooogggg	chr1:21102001-21102260(-)$1	259	54	68	9.8298
ggggoooooogggg	chr15:49032587-49032892(-)$1	305	141	155	9.8298
ddddoooooodddd	chr2:178087689-178087945(+)$1	256	231	245	11.3668
ddddoooooodddd	chr8:23429670-23429910(+)$1	240	5	19	11.3668
ddddoooooodddd	chrX:135956554-135956775(-)$1	221	87	101	11.3668
ffffooooooffff	chr17:45699296-45699599(+)$1	303	89	103	9.3239
#cccooooooccc4	chr5:110833265-110833565(-)$1	300	88	102	10.1270
ddddoooooodddd	chr7:44048987-44049274(-)$1	287	237	251	11.3668
d[bboooooobb]d	chr10:35298778-35299018(-)$1	240	151	165	9.3037
eeeeooooooeeee	chr9:114985260-114985487(-)$1	227	23	37	10.5729
ffffooooooffff	chr1:241793093-241793333(-)$1	240	50	64	9.3239
eeeeooooooeeee	chr8:126034292-126034565(+)$1	273	142	156	10.5729
ddddoooooodddd	chr2:178088247-178088483(+)$1	236	126	140	11.3668
ddddoooooodddd	chrX:135956575-135956803(-)$1	228	115	129	11.3668
#cccooooooccc2	chr2:175006448-175006754(-)$1	306	149	163	9.9274
eeeeooooooeeee	chr1:241792482-241792755(-)$1	273	67	81	10.5729
ddddoooooodddd	chr5:40826123-40826381(-)$1	258	199	213	11.3668
ddddoooooodddd	chr15:34817437-34817732(-)$1	295	179	193	11.3668
ffffooooooffff	chr7:26229492-26229759(-)$1	267	173	187	9.3239
ddddoooooodddd	chr7:99162199-99162459(+)$1	260	68	82	11.3668

#otherMatches

#Seq PSSM
ACUAGUAAUAUAGG	chr6:111216018-111216314(+)$1	296	186	200	9.9633
GAGGUUCUACUGUC	chr7:66420998-66421301(+)$1	303	274	288	9.5079
AAUAAAAAUCUGAU	chr19:1270712-1271009(+)$1	297	93	107	9.1358
CUUUAAAAUAAAAG	chr7:26229787-26230067(-)$1	280	106	120	11.3668
UAAUAUUUUAAUUA	chr1:241796464-241796727(-)$1	263	1	15	10.5729
CAAGAUAUCCCUUG	chr5:86687606-86687879(-)$1	273	148	162	11.3668
CAUCAUUUUAGAUG	chr17:27583281-27583567(-)$1	286	185	199	11.3668
gagcgcgguggcuc	chr4:95585567-95585840(+)$1	273	175	189	10.5729
AGACAGAAAAGACU	chr12:22841057-22841308(+)$1	251	174	188	9.8662
UAGUGCUAAUGCUG	chr8:126034268-126034492(+)$1	224	166	180	10.5729
AACACUGAAAUGUU	chrX:110931139-110931398(+)$1	259	11	25	11.3668
ACUUAAAGACGAGA	chr1:192989370-192989667(-)$1	297	210	224	9.3404
guguauuuaaacau	chr1:21102001-21102260(-)$1	259	54	68	9.8298
GAAAAAAACAUUUU	chr15:49032587-49032892(-)$1	305	141	155	9.8298
AGAACCCAAUUUCU	chr2:178087689-178087945(+)$1	256	231	245	11.3668
UCCCAGAGGAGGGA	chr8:23429670-23429910(+)$1	240	5	19	11.3668
UCUGUAAAUUCAGA	chrX:135956554-135956775(-)$1	221	87	101	11.3668
UUCAAACCAGUGGG	chr17:45699296-45699599(+)$1	303	89	103	9.3239
AUAAAAAAGCUUAA	chr5:110833265-110833565(-)$1	300	88	102	10.1270
UUCUAUCGUCAGAA	chr7:44048987-44049274(-)$1	287	237	251	11.3668
GAUAACCUAAUAAU	chr10:35298778-35299018(-)$1	240	151	165	9.3037
CAGUGUCUCAGCUG	chr9:114985260-114985487(-)$1	227	23	37	10.5729
AAUUGUAAUAAAUU	chr1:241793093-241793333(-)$1	240	50	64	9.3239
UAGUGCUAAUGCUG	chr8:126034292-126034565(+)$1	273	142	156	10.5729
UCACAAAUUAGUGA	chr2:178088247-178088483(+)$1	236	126	140	11.3668
UCUGUAAAUUCAGA	chrX:135956575-135956803(-)$1	228	115	129	11.3668
AACUAGAAAAGGUG	chr2:175006448-175006754(-)$1	306	149	163	9.9274
GCUAUUGUAUUAGC	chr1:241792482-241792755(-)$1	273	67	81	10.5729
ACUGGUAAAACAGU	chr5:40826123-40826381(-)$1	258	199	213	11.3668
UGCCUAAAGUGGCA	chr15:34817437-34817732(-)$1	295	179	193	11.3668
UUGGCUGUCCCCAA	chr7:26229492-26229759(-)$1	267	173	187	9.3239
UACAUAUAAUUGUA	chr7:99162199-99162459(+)$1	260	68	82	11.3668

#DB
.(((......))).	chr6:111216018-111216314(+)$1	1	186	200	9.9633
((.(......).))	chr7:66420998-66421301(+)$1	1	274	288	9.5079
(.((......)).)	chr19:1270712-1271009(+)$1	1	93	107	9.1358
((((......))))	chr7:26229787-26230067(-)$1	1	106	120	11.3668
((((......))))	chr1:241796464-241796727(-)$1	1	1	15	10.5729
((((......))))	chr5:86687606-86687879(-)$1	1	148	162	11.3668
((((......))))	chr17:27583281-27583567(-)$1	1	185	199	11.3668
((((......))))	chr4:95585567-95585840(+)$1	1	175	189	10.5729
((.(......).))	chr12:22841057-22841308(+)$1	1	174	188	9.8662
((((......))))	chr8:126034268-126034492(+)$1	1	166	180	10.5729
((((......))))	chrX:110931139-110931398(+)$1	1	11	25	11.3668
.(((......))).	chr1:192989370-192989667(-)$1	1	210	224	9.3404
((((......))))	chr1:21102001-21102260(-)$1	1	54	68	9.8298
((((......))))	chr15:49032587-49032892(-)$1	1	141	155	9.8298
((((......))))	chr2:178087689-178087945(+)$1	1	231	245	11.3668
((((......))))	chr8:23429670-23429910(+)$1	1	5	19	11.3668
((((......))))	chrX:135956554-135956775(-)$1	1	87	101	11.3668
((((......))))	chr17:45699296-45699599(+)$1	1	89	103	9.3239
.(((......))).	chr5:110833265-110833565(-)$1	1	88	102	10.1270
((((......))))	chr7:44048987-44049274(-)$1	1	237	251	11.3668
(.((......)).)	chr10:35298778-35299018(-)$1	1	151	165	9.3037
((((......))))	chr9:114985260-114985487(-)$1	1	23	37	10.5729
((((......))))	chr1:241793093-241793333(-)$1	1	50	64	9.3239
((((......))))	chr8:126034292-126034565(+)$1	1	142	156	10.5729
((((......))))	chr2:178088247-178088483(+)$1	1	126	140	11.3668
((((......))))	chrX:135956575-135956803(-)$1	1	115	129	11.3668
.(((......))).	chr2:175006448-175006754(-)$1	1	149	163	9.9274
((((......))))	chr1:241792482-241792755(-)$1	1	67	81	10.5729
((((......))))	chr5:40826123-40826381(-)$1	1	199	213	11.3668
((((......))))	chr15:34817437-34817732(-)$1	1	179	193	11.3668
((((......))))	chr7:26229492-26229759(-)$1	1	173	187	9.3239
((((......))))	chr7:99162199-99162459(+)$1	1	68	82	11.3668

#PSSM
d : 0.43	e : 0.21	f : 0.12	" : 0.06	g : 0.06	# : 0.06	c : 0.03	
d : 0.40	e : 0.18	c : 0.15	f : 0.12	[ : 0.06	g : 0.06	
d : 0.40	e : 0.18	c : 0.12	f : 0.09	[ : 0.06	b : 0.06	g : 0.06	
d : 0.40	e : 0.18	c : 0.12	f : 0.09	a : 0.06	b : 0.06	g : 0.06	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.40	e : 0.18	c : 0.12	f : 0.09	a : 0.06	b : 0.06	g : 0.06	
d : 0.40	e : 0.18	c : 0.12	f : 0.09	] : 0.06	b : 0.06	g : 0.06	
d : 0.40	e : 0.18	c : 0.15	f : 0.12	] : 0.06	g : 0.06	
d : 0.43	e : 0.21	f : 0.12	2 : 0.06	g : 0.06	c : 0.03	5 : 0.03	4 : 0.03	

#score	336.01089548925626
#seq	32
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_transcript_m2_run1.txt

#BEAR
$$$bb[ddddooooooddddbb22b	chr7:1027081-1027357(+)$1	276	189	214	11.6106
bccc"""ddddllldddd333ccc]	chr14:35872778-35872996(-)$1	218	139	164	9.1537
ca####ddddoooooodddd22a]c	chr10:102740036-102740296(+)$1	260	112	137	13.9689
eeeee[ddddnnnnndddd]eeeee	chr2:43453234-43453483(-)$1	249	164	189	8.7151
d[bb"""cccooooooccc]bb]dd	chr17:80016426-80016720(-)$1	294	195	220	11.8008
e[ccc[ddddoooooodddd]ccc]	chr9:139726256-139726554(+)$1	298	89	114	13.8636
b[ccc!!ddddmmmmdddd333ccc	chr6:132271746-132271990(-)$1	244	91	116	9.1468
!ggggggg[aooooooa]ggggggg	chr3:48456818-48457050(-)$1	232	197	222	10.7645
ddd[ddddddddmmmmdddd4444d	chr2:27356900-27357230(-)$1	330	204	229	8.7043
!eeeee!!bboooooobb22eeeee	chr16:88721907-88722154(-)$1	247	214	239	9.9530
ddddd[ddddoooooodddd]dddd	chr6:37139192-37139410(+)$1	218	106	131	14.0240
f!!bb[ddddooooooddddbb22f	chr17:80047206-80047440(-)$1	234	172	197	12.4189
gggddddddddnnnnndddd22ddd	chr1:156351927-156352197(+)$1	270	122	147	9.7243
eeeee[ddddoooooodddd]eeee	chr8:100507998-100508256(+)$1	258	85	110	13.1646
ddd[cccddddnnnnndddd]ccc]	chr11:821960-822188(+)$1	228	73	98	9.8419
[bb[bb[cccooooooccc]bbbb]	chr19:54024502-54024758(+)$1	256	99	124	10.0252
cdddd[ddddoooooodddd333dd	chr17:79916640-79916870(-)$1	230	65	90	14.6882
iiiiiii[bboooooobb22iiiii	chr2:219266335-219266545(+)$1	210	181	206	10.3362
dd$$$$$cccooooooccc4444dd	chr20:56136586-56136834(+)$1	248	85	110	12.1310
ddbb"""cccoooooocccbb]ddd	chr6:134493183-134493437(-)$1	254	190	215	11.9007
!!ccc!!ddddnnnnndddd22ccc	chr20:56138684-56138948(+)$1	264	63	88	10.6161
:dddd!!cccooooooccc22dddd	chr19:5924182-5924445(-)$1	263	76	101	11.7048
cdddd!!cccoooooocccdddd]c	chr17:27074221-27074456(+)$1	235	96	121	12.3823
lllcccddddoooooodddd:::dd	chr17:4686007-4686270(+)$1	263	137	162	9.8694
:ccc[eeeeeooooooeeeee]ccc	chr17:37901141-37901411(+)$1	270	173	198	10.2295
!dddd[ddddoooooodddd]dddd	chr3:48451382-48451604(-)$1	222	101	126	14.1514
!dddd[bbaooooooa]bb]dddd2	chr17:39845697-39845972(+)$1	275	162	187	9.2923
ffdddd[cccooooooccc]dddd:	chr20:61458607-61458912(+)$1	305	63	88	10.3490
"""eeeeebboooooobb]eeeeef	chr7:75614754-75614985(+)$1	231	104	129	9.7641
[iiiiiiiiiooooooiiiiiiiii	chr20:60856116-60856361(+)$1	245	163	188	11.0171
fffffdddd[allla]dddd4444f	chr9:139685915-139686186(+)$1	271	152	177	8.7579
:dddd[ddddoooooodddd]dddd	chrX:153668587-153668866(+)$1	279	66	91	13.2069
dd!!ccc[bboooooobb]ccc22d	chr16:72142227-72142502(+)$1	275	146	171	10.6340
ddd"""ddddoooooodddddddd:	chr16:88718714-88718961(-)$1	247	221	246	12.9506
ee[bb[ddddoooooodddd]bb]e	chr14:32954183-32954428(+)$1	245	42	67	12.8614
cc[a[bb[bboooooobb]bb]a]c	chrM:14213-14417(-)$1	204	168	193	10.0005
ddd!!eeeeeooooooeeeee22dd	chr19:46357608-46357893(-)$1	285	227	252	11.3725
eggggggg[aooooooa]ggggggg	chrX:152957771-152958013(+)$1	242	139	164	10.5807
ffffffddddoooooodddd:FFFF	chr1:43212718-43212989(-)$1	271	24	49	9.6183
dddd"""ddddnnnnndddd22ddd	chr14:24568831-24569086(+)$1	255	92	117	10.7513
ddd!!bb!!aooooooa22bb22dd	chr3:48462909-48463160(-)$1	251	54	79	10.4504
444cccddddooooooddddFFFFF	chr17:74381954-74382203(+)$1	249	210	235	10.0645
ccc$$$$$bboooooobb4444ccc	chr5:134263344-134263583(+)$1	239	198	223	10.8823
ggga!!ddddoooooodddd22a]g	chr11:64534863-64535123(-)$1	260	144	169	14.0189
[bb[a[ddddoooooodddd]abb]	chr20:61846853-61847101(-)$1	248	9	34	12.9878
[ccc"""ddddnnnnndddd333cc	chr9:139904666-139904966(-)$1	300	4	29	11.1795
Edddd[ccc[aooooooaccc]ddd	chr1:173835524-173835764(-)$1	240	11	36	10.3151

#otherMatches

#Seq PSSM
CCAGCGCUCCCCGACCGGAGGCAAU	chr7:1027081-1027357(+)$1	276	189	214	11.6106
GGACGUAGCUGAUGUAGCAGAGUCA	chr14:35872778-35872996(-)$1	218	139	164	9.1537
GCUUCUGAAUCCAUUAAUUCCUGCC	chr10:102740036-102740296(+)$1	260	112	137	13.9689
UCCCGCCCUGCCUUUCAGGUCGGGA	chr2:43453234-43453483(-)$1	249	164	189	8.7151
AUGCCUCAGGACGGCCCCUUGCUUC	chr17:80016426-80016720(-)$1	294	195	220	11.8008
UGCCCGGUGCUCCGGUGUGCGGGGG	chr9:139726256-139726554(+)$1	298	89	114	13.8636
CAGCCCCCACCGCUAGGUGUCCGGC	chr6:132271746-132271990(-)$1	244	91	116	9.1468
GGGCUGGGGCUGAGCUGACCUAGCC	chr3:48456818-48457050(-)$1	232	197	222	10.7645
UUGCCUGACGCCCAGGGGCGAAUUU	chr2:27356900-27357230(-)$1	330	204	229	8.7043
GGAGCCAAAUGCAGAGAUGGGGCUC	chr16:88721907-88722154(-)$1	247	214	239	9.9530
UGACUCGGCCCGGCCCGGCCCAGUC	chr6:37139192-37139410(+)$1	218	106	131	14.0240
AUGUCCAGGCCCCGGUGUUUGAGUU	chr17:80047206-80047440(-)$1	234	172	197	12.4189
UUCUCUUUCACUGUGUGUGACCAAG	chr1:156351927-156352197(+)$1	270	122	147	9.7243
UUUUCUUUAAAAUUGAUUGAUGAAA	chr8:100507998-100508256(+)$1	258	85	110	13.1646
CUAGCCCUGGACACCUUCUAUGGGG	chr11:821960-822188(+)$1	228	73	98	9.8419
gugugugugugugugAAUAAGCCAG	chr19:54024502-54024758(+)$1	256	99	124	10.0252
GGGGCACAGGGUCUUGCCUGGGAGU	chr17:79916640-79916870(-)$1	230	65	90	14.6882
UUUCAGGAUGGACUUGCAGACCUGA	chr2:219266335-219266545(+)$1	210	181	206	10.3362
CUGAAGAAGUAUGACAACUGGUAAG	chr20:56136586-56136834(+)$1	248	85	110	12.1310
GAGUAAACUCCUCUCAGAGACUUCU	chr6:134493183-134493437(-)$1	254	190	215	11.9007
GGGAUGACAUUGCCUGGAUGAAGUU	chr20:56138684-56138948(+)$1	264	63	88	10.6161
CUAGAAUGGUUUGCCUACCUCUUUA	chr19:5924182-5924445(-)$1	263	76	101	11.7048
GUCUGUUGCCCUUGGAGGCCGGAGC	chr17:27074221-27074456(+)$1	235	96	121	12.3823
ACAGGGGAGCUUACUUGCUCAACCG	chr17:4686007-4686270(+)$1	263	137	162	9.8694
UGAGGAGGGCAUCACAGCCUUGCUC	chr17:37901141-37901411(+)$1	270	173	198	10.2295
GUGGGCUCUUGGCACAGGGACCCCA	chr3:48451382-48451604(-)$1	222	101	126	14.1514
GUCCCGGACUGACCUGCUCGGGGAG	chr17:39845697-39845972(+)$1	275	162	187	9.2923
CUGGGUCCUUAUGUGGAAGAACCCA	chr20:61458607-61458912(+)$1	305	63	88	10.3490
UCGGUGUGGCGGUGGAGCUCACACG	chr7:75614754-75614985(+)$1	231	104	129	9.7641
GGGGAGCGUGAGCAUCCGUGCUCCU	chr20:60856116-60856361(+)$1	245	163	188	11.0171
UCCUCCACAGCCAGGGUGUGCCCAG	chr9:139685915-139686186(+)$1	271	152	177	8.7579
UCAGGGUGGUGGGAAGACUGGCCUG	chrX:153668587-153668866(+)$1	279	66	91	13.2069
CCGGGAGGUGCGAGCUCAACUCAAG	chr16:72142227-72142502(+)$1	275	146	171	10.6340
UGCUUCAGCUGCCCUAAGCUGCACC	chr16:88718714-88718961(-)$1	247	221	246	12.9506
AUGGGUUUAAGUCCAAUUGAUCUAG	chr14:32954183-32954428(+)$1	245	42	67	12.8614
GGGGGCUUUGUAUGAUUAUGGGCGU	chrM:14213-14417(-)$1	204	168	193	10.0005
AUGACCACCUCAGAGAGGGUGAGCG	chr19:46357608-46357893(-)$1	285	227	252	11.3725
GGGCUCCUGGUCAGGCUGGGGAGUC	chrX:152957771-152958013(+)$1	242	139	164	10.5807
UGGACCCUCGACACAGCGAGCGGGU	chr1:43212718-43212989(-)$1	271	24	49	9.6183
GUGAAGGUGAGGGACUCUCAGAUCA	chr14:24568831-24569086(+)$1	255	92	117	10.7513
AUCAGCCGAGAGGAGACGAGGGAGG	chr3:48462909-48463160(-)$1	251	54	79	10.4504
ACGUGCAGCCCCUUUUGGCUGAGGC	chr17:74381954-74382203(+)$1	249	210	235	10.0645
UUAGGGGGUCGGAGGAGAAGGAUAA	chr5:134263344-134263583(+)$1	239	198	223	10.8823
GCUGUUGGCUAGAAGCAGCUCUCAA	chr11:64534863-64535123(-)$1	260	144	169	14.0189
GGCCGGGGUCGCACGUGACCGCGCG	chr20:61846853-61847101(-)$1	248	9	34	12.9878
GGGUGGGGCCUGCAUGGGGUGGGGC	chr9:139904666-139904966(-)$1	300	4	29	11.1795
GGAACAUAGAGAGUACACCUAAGUU	chr1:173835524-173835764(-)$1	240	11	36	10.3151

#DB
...((.((((......))))))..)	chr7:1027081-1027357(+)$1	1	189	214	11.6106
((((...((((...))))...))).	chr14:35872778-35872996(-)$1	1	139	164	9.1537
((....((((......))))..).)	chr10:102740036-102740296(+)$1	1	112	137	13.9689
(((((.((((.....)))).)))))	chr2:43453234-43453483(-)$1	1	164	189	8.7151
(.((...(((......))).)).))	chr17:80016426-80016720(-)$1	1	195	220	11.8008
(.(((.((((......)))).))).	chr9:139726256-139726554(+)$1	1	89	114	13.8636
(.(((..((((....))))...)))	chr6:132271746-132271990(-)$1	1	91	116	9.1468
.(((((((.(......).)))))))	chr3:48456818-48457050(-)$1	1	197	222	10.7645
(((.((((((((....))))....)	chr2:27356900-27357230(-)$1	1	204	229	8.7043
.(((((..((......))..)))))	chr16:88721907-88722154(-)$1	1	214	239	9.9530
(((((.((((......)))).))))	chr6:37139192-37139410(+)$1	1	106	131	14.0240
(..((.((((......))))))..)	chr17:80047206-80047440(-)$1	1	172	197	12.4189
)))((((((((.....))))..)))	chr1:156351927-156352197(+)$1	1	122	147	9.7243
(((((.((((......)))).))))	chr8:100507998-100508256(+)$1	1	85	110	13.1646
(((.(((((((.....)))).))).	chr11:821960-822188(+)$1	1	73	98	9.8419
.((.((.(((......))).)))).	chr19:54024502-54024758(+)$1	1	99	124	10.0252
(((((.((((......))))...))	chr17:79916640-79916870(-)$1	1	65	90	14.6882
(((((((.((......))..)))))	chr2:219266335-219266545(+)$1	1	181	206	10.3362
((.....(((......)))....))	chr20:56136586-56136834(+)$1	1	85	110	12.1310
((((...(((......))))).)))	chr6:134493183-134493437(-)$1	1	190	215	11.9007
..(((..((((.....))))..)))	chr20:56138684-56138948(+)$1	1	63	88	10.6161
.((((..(((......)))..))))	chr19:5924182-5924445(-)$1	1	76	101	11.7048
(((((..(((......))))))).)	chr17:27074221-27074456(+)$1	1	96	121	12.3823
...)))((((......))))...((	chr17:4686007-4686270(+)$1	1	137	162	9.8694
.(((.(((((......))))).)))	chr17:37901141-37901411(+)$1	1	173	198	10.2295
.((((.((((......)))).))))	chr3:48451382-48451604(-)$1	1	101	126	14.1514
.((((.(((......).)).)))).	chr17:39845697-39845972(+)$1	1	162	187	9.2923
))((((.(((......))).)))).	chr20:61458607-61458912(+)$1	1	63	88	10.3490
...(((((((......)).))))))	chr7:75614754-75614985(+)$1	1	104	129	9.7641
.(((((((((......)))))))))	chr20:60856116-60856361(+)$1	1	163	188	11.0171
(((((((((.(...).))))....)	chr9:139685915-139686186(+)$1	1	152	177	8.7579
.((((.((((......)))).))))	chrX:153668587-153668866(+)$1	1	66	91	13.2069
((..(((.((......)).)))..)	chr16:72142227-72142502(+)$1	1	146	171	10.6340
(((...((((......)))))))).	chr16:88718714-88718961(-)$1	1	221	246	12.9506
((.((.((((......)))).)).)	chr14:32954183-32954428(+)$1	1	42	67	12.8614
((.(.((.((......)).)).).)	chrM:14213-14417(-)$1	1	168	193	10.0005
(((..(((((......)))))..))	chr19:46357608-46357893(-)$1	1	227	252	11.3725
((((((((.(......).)))))))	chrX:152957771-152958013(+)$1	1	139	164	10.5807
))))))((((......)))).))))	chr1:43212718-43212989(-)$1	1	24	49	9.6183
((((...((((.....))))..)))	chr14:24568831-24569086(+)$1	1	92	117	10.7513
(((..((..(......)..))..))	chr3:48462909-48463160(-)$1	1	54	79	10.4504
...)))((((......)))))))))	chr17:74381954-74382203(+)$1	1	210	235	10.0645
(((.....((......))....)))	chr5:134263344-134263583(+)$1	1	198	223	10.8823
((((..((((......))))..).)	chr11:64534863-64535123(-)$1	1	144	169	14.0189
.((.(.((((......)))).))).	chr20:61846853-61847101(-)$1	1	9	34	12.9878
.(((...((((.....))))...))	chr9:139904666-139904966(-)$1	1	4	29	11.1795
(((((.(((.(......)))).)))	chr1:173835524-173835764(-)$1	1	11	36	10.3151

#PSSM
d : 0.23	c : 0.10	e : 0.10	! : 0.10	f : 0.08	[ : 0.08	: : 0.06	b : 0.04	g : 0.04	$ : 0.02	i : 0.02	l : 0.02	" : 0.02	4 : 0.02	E : 0.02	
d : 0.36	c : 0.10	e : 0.08	g : 0.08	[ : 0.06	f : 0.06	! : 0.04	b : 0.04	i : 0.04	$ : 0.02	a : 0.02	l : 0.02	" : 0.02	4 : 0.02	
d : 0.31	c : 0.14	b : 0.08	g : 0.08	e : 0.06	$ : 0.04	! : 0.04	i : 0.04	f : 0.04	[ : 0.04	# : 0.02	l : 0.02	" : 0.02	4 : 0.02	
d : 0.23	c : 0.17	b : 0.10	e : 0.08	[ : 0.08	! : 0.06	g : 0.04	i : 0.04	$ : 0.04	f : 0.04	a : 0.04	# : 0.02	" : 0.02	
d : 0.23	c : 0.14	" : 0.12	b : 0.08	e : 0.08	! : 0.06	g : 0.04	i : 0.04	$ : 0.04	[ : 0.04	f : 0.04	# : 0.02	a : 0.02	
[ : 0.27	" : 0.12	! : 0.10	d : 0.08	e : 0.08	c : 0.08	b : 0.06	g : 0.04	i : 0.04	$ : 0.04	# : 0.02	f : 0.02	
d : 0.42	" : 0.10	! : 0.10	c : 0.06	e : 0.06	b : 0.06	g : 0.04	[ : 0.04	i : 0.04	$ : 0.04	
d : 0.55	c : 0.17	[ : 0.06	e : 0.06	g : 0.04	! : 0.04	b : 0.02	i : 0.02	$ : 0.02	
d : 0.55	c : 0.17	b : 0.12	[ : 0.04	e : 0.04	a : 0.02	i : 0.02	! : 0.02	
d : 0.53	c : 0.14	b : 0.12	a : 0.06	e : 0.04	[ : 0.04	o : 0.02	i : 0.02	
o : 0.76	d : 0.17	a : 0.04	n : 0.02	
o : 0.78	n : 0.12	l : 0.04	m : 0.02	d : 0.02	
o : 0.78	n : 0.12	l : 0.04	m : 0.04	
o : 0.78	n : 0.12	l : 0.04	m : 0.04	
o : 0.78	n : 0.12	m : 0.04	d : 0.02	a : 0.02	
o : 0.76	n : 0.10	d : 0.06	m : 0.02	a : 0.02	] : 0.02	
d : 0.55	c : 0.14	b : 0.12	a : 0.06	e : 0.04	] : 0.02	i : 0.02	o : 0.02	
d : 0.55	c : 0.14	b : 0.14	] : 0.04	e : 0.04	i : 0.02	2 : 0.02	a : 0.02	
d : 0.53	c : 0.17	2 : 0.06	] : 0.06	g : 0.04	e : 0.04	3 : 0.02	b : 0.02	i : 0.02	4 : 0.02	
d : 0.51	] : 0.10	2 : 0.06	b : 0.06	e : 0.06	3 : 0.04	g : 0.04	4 : 0.04	c : 0.04	i : 0.02	
] : 0.17	b : 0.14	2 : 0.12	e : 0.10	3 : 0.08	4 : 0.08	d : 0.08	g : 0.04	i : 0.04	: : 0.04	c : 0.04	F : 0.02	
d : 0.17	2 : 0.14	b : 0.10	c : 0.08	e : 0.08	4 : 0.08	] : 0.08	3 : 0.06	g : 0.04	i : 0.04	F : 0.04	: : 0.02	a : 0.02	
d : 0.25	c : 0.14	2 : 0.10	e : 0.08	a : 0.06	4 : 0.06	b : 0.06	g : 0.04	3 : 0.04	i : 0.04	F : 0.04	] : 0.02	: : 0.02	
d : 0.36	c : 0.17	] : 0.10	e : 0.08	2 : 0.06	g : 0.04	4 : 0.04	b : 0.04	i : 0.04	F : 0.04	
d : 0.34	c : 0.17	] : 0.10	e : 0.08	g : 0.06	f : 0.06	i : 0.04	: : 0.04	F : 0.04	b : 0.02	2 : 0.02	

#score	525.9472269339914
#seq	47
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF351RHN_AQR_transcript_m1_run1.txt

#BEAR
ffff"""==========[aooooooa]==========555	chr16:56968995-56969277(+)$1	282	17	57	13.9138
c[ffffff[ccc[a[cccnnnnnccca]ccc]ffffff]c	chr16:67980128-67980436(-)$1	308	148	188	14.3487
dccc[ccc!!ccc"""cccmmmmccc333ccc333ccc]c	chr20:31961750-31962021(-)$1	271	202	242	15.8547
dd"""ccc!!ccc[aooooooa]ccc22cccddddbbccc	chr9:19119688-19119946(-)$1	258	29	69	12.7312
+++++iiiiiiiii[cccooooooccc]iiiiiiiii>>>	chr10:93578927-93579191(+)$1	264	192	232	13.1344
!!ccc####eeeee[ccclllccc]eeeee22ccc333ff	chr16:2647171-2647432(+)$1	261	140	180	13.7413
mmeeeeeeeeee"""cccnnnnnccc333eeeee======	chr2:54891731-54891962(+)$1	231	110	150	13.7118
b:==========!!a[bboooooobb]a==========GG	chr2:173420973-173421224(+)$1	251	108	148	14.3716
ggg"""eeeee####cccnnnnnccceeeee333gggggg	chr2:10937104-10937345(-)$1	241	64	104	15.7318
gggg[ccc"""ccc[bbnnnnnbb]cccccc22ggggggg	chr8:145140321-145140583(+)$1	262	97	137	13.9072
gggg!!a[iiiiiiiiiooooooiiiiiiiiia22ggggg	chr19:650095-650336(-)$1	241	147	187	15.9106
=======ccc"""cccmmmmcccccc22===========3	chr17:79952509-79952730(+)$1	221	120	160	13.8882
:ccc[gggggggeeeeeooooooeeeee333ggggggg]c	chr14:24612621-24612861(-)$1	240	51	91	13.6748
eeeeeggggggg"""ccclllccc4444ggggggg:ffff	chr7:44838661-44838982(+)$1	321	178	218	12.8917
dddcccccc[dddd[ccclllccc]dddd]ccc333ccc]	chr21:9968375-9968616(-)$1	241	122	162	13.2410
===========####cccqqqqqqqqccc===========	chr18:19208911-19209196(+)$1	285	97	137	13.0862
##bb[===========aooooooa]===========]bb5	chr11:62413895-62414134(-)$1	239	110	150	15.9835
eeeee[ccc[bb"""cccnnnnnccc]bb]ccc]eeeee5	chr3:12633048-12633311(-)$1	263	132	172	13.7795
ccc[a[dddd[cccacccnnnnnccc]a22ccc]dddda]	chr11:61109160-61109403(+)$1	243	63	103	14.2335
"""ccc!!ccc!!a[bboooooobba]ccc333ccc4444	chr1:44451028-44451351(+)$1	323	207	247	15.4995
eeee"""bb"""bb[cccmmmmccc]bb333bb333eeee	chr17:74099571-74099814(-)$1	243	66	106	12.8788
bb"""ccc!!dddda!!ccclllccc22a22dddd22ccc	chr11:33795740-33796041(-)$1	301	74	114	12.3737
"============!!cccooooooccc============3	chr1:155103644-155103881(+)$1	237	97	137	18.7319
ccc[ccc[bb[eeeee[annnnna]eeeee]bbccc]ccc	chr3:140660835-140661044(+)$1	209	54	94	13.1479
[cccccc[cccbb[cccooooooccc22bb]cccccc]cc	chr1:11718440-11718718(+)$1	278	211	251	14.9814
=========!!dddd[cccmmmmccc22dddd========	chr19:46351870-46352121(-)$1	251	102	142	14.8327
e[ccc[ccc[bb!!ddddnnnnndddd]bb]ccc22ccc2	chr19:46519169-46519437(+)$1	268	25	65	12.9477
!ccc!!ccc!!ffffffooooooffffff4444cccccc3	chr9:117045948-117046170(+)$1	222	79	119	14.6762
gggg[bb!!dddd"""cccmmmmcccddddbbggggggg]	chr19:39191252-39191464(+)$1	212	56	96	12.6332
$ccc[iiiiiiiii[cccnnnnnccc22iiiiiiiiiccc	chr17:40139774-40140077(-)$1	303	32	72	17.6594
"""bb[bb"""ccc!!cccmmmmccc22ccc333bb]bbc	chr16:69364545-69364829(-)$1	284	33	73	13.7227
b[ccc####eeeee[cccmmmmccceeeeeccc]bb]hhh	chr7:56032272-56032580(+)$1	308	73	113	12.8737
eeee[gggggggbb[cccnnnnnccc]bb22ggggggg22	chr2:218679478-218679736(-)$1	258	163	203	14.5234
gggg"""gggggggddddnnnnndddd]ggggggg>>>>>	chr6:31935998-31936275(+)$1	277	47	87	13.3027
:ccc!!iiiiiiiii!!bbmmmmbb22iiiiiiiii22cc	chr16:28963433-28963662(+)$1	229	103	143	12.8536
eee!!ccc[ggggggg[annnnnaggggggg]ccc]eeee	chr14:62186945-62187256(+)$1	311	80	120	14.0181
!ffffff[ggggggg[bboooooobb]ggggggg]fffff	chr1:1572610-1572872(-)$1	262	115	155	12.9569
effffffbb!!ccccccooooooccc]ccc4444bb]fff	chr1:17981156-17981383(+)$1	227	71	111	14.2430
:ccc==========[bboooooobb==========22ccc	chr8:22273412-22273672(+)$1	260	8	48	16.0077
gggg[ccc####a[ddddmmmmdddd]a4444cccggggg	chr4:89711638-89711905(-)$1	267	141	181	13.6449
======="""dddd"""annnnna333dddd333======	chr20:42088283-42088550(+)$1	267	84	124	16.3220
gg####bb[ccc"""cccnnnnnccc4444cccbb4444g	chr14:23775980-23776302(+)$1	322	221	261	16.0648
:gggggggcccffffffooooooffffff]ccc4444ggg	chr3:170585872-170586121(-)$1	249	116	156	12.7264
ccccccccc[bb!!cccooooooccc4444bb]ccc]ccc	chr19:55556127-55556376(-)$1	249	174	214	15.6329
ccbb"""===========mmmm===========]bb]ccc	chr2:8823676-8823925(+)$1	249	18	58	15.2251
fccc[dddd!!ccc[cccmmmmccc]ccc22dddd22ccc	chr10:51572392-51572602(+)$1	210	153	193	12.9837
===bb[ccc[ccc[ddddnnnnndddd333ccc]ccc333	chr17:7011019-7011236(-)$1	217	125	165	14.8039
iiiiiiiiieeeee[cccmmmmccc]eeeee]iiiiiiii	chr19:9728664-9729034(-)$1	370	127	167	14.4389
ggggg[a[bb[eeeee[annnnna]eeeee]bb]a]gggg	chr16:28855882-28856110(-)$1	228	74	114	13.4739
iiiii!!eeeee"""bboooooobb333eeeeeiiiiiii	chr19:49004669-49004940(-)$1	271	71	111	15.1190
ggggggg[cccccc[cccmmmmccc]ccc]ccc]gggggg	chr17:8110574-8110811(-)$1	237	165	205	14.8953
!ccc####bb[eeeeebbnnnnnbb]eeeee]bb333ccc	chr20:31017151-31017400(+)$1	249	159	199	13.1689
cggggggg"""ccc[cccmmmmcccccc22gggggggfff	chr16:75267721-75267985(-)$1	264	95	135	14.6746
iiiiiiii!!a[ffffffmmmmffffffa]iiiiiiiiic	chr6:74228890-74229129(-)$1	239	138	178	13.2272

#otherMatches

#Seq PSSM
UGAGAAAGUGUUUUCCCGUGAUGCUGGGGGGAAACACACA	chr16:56968995-56969277(+)$1	282	17	57	13.9138
GCGGAGGGCCACAGACUGGUGGUCAGCCGUGCUCCUCCUC	chr16:67980128-67980436(-)$1	308	148	188	14.3487
aaguagcugcucaguaaauauuuauuguaugacuaaGCCA	chr20:31961750-31962021(-)$1	271	202	242	15.8547
AGAAAGUCAAGACCCAGGUUAGAGUCCAGGCCUUAUCACU	chr9:19119688-19119946(-)$1	258	29	69	12.7312
UUUUUUUUUUUUUACAGUAAGCAAACUUUAAAAAGAAUUU	chr10:93578927-93579191(+)$1	264	192	232	13.1344
AAUGGGAGGGCUUUGCACCACGUGGGAAGCAGCCACAGGC	chr16:2647171-2647432(+)$1	261	140	180	13.7413
AGGCUGCCACAGUAAGAUGGGAAGUCAGCCUGUGAAGGGA	chr2:54891731-54891962(+)$1	231	110	150	13.7118
CGGCCCGGGACCUUGGGCCUUUUUGCGCGGUCCCGGGCGG	chr2:173420973-173421224(+)$1	251	108	148	14.3716
GUCAGUAUGGUGUUCAGGGAUUUCCUACCAUUAAGAUUUU	chr2:10937104-10937345(-)$1	241	64	104	15.7318
AGGUCCCCUGGACAUGCAGACAGCUUGUGGGUUGCCUCUG	chr8:145140321-145140583(+)$1	262	97	137	13.9072
UGGUGAGUGGGUGGGGGUGCCUGUCCCCAUCCCCAGCCAG	chr19:650095-650336(-)$1	241	147	187	15.9106
CCAGGGCCUCCGUGGCACUGGUUGAGCUGCCCUGGGGUAC	chr17:79952509-79952730(+)$1	221	120	160	13.8882
ACCUGAGGGCCUUCUAUGUGAGUGUGGAGUAAGGCUUUAG	chr14:24612621-24612861(-)$1	240	51	91	13.6748
UUACAGCUGUUUGCAGACAAGGUCCCAAAGACAGCAGGUU	chr7:44838661-44838982(+)$1	321	178	218	12.8917
AACCUGUGGGCCUCGGGGGAUCCCGGGGGGCCAGACCAGU	chr21:9968375-9968616(-)$1	241	122	162	13.2410
UUCUUUUCCUUCAGUUGCaggaagaggcagaggaagagga	chr18:19208911-19209196(+)$1	285	97	137	13.0862
CCGGAAUCUGGGGGCGCGCCCGGGACGCCCCCAGAUCCCC	chr11:62413895-62414134(-)$1	239	110	150	15.9835
CUCUGGAGUGCUGGAGUGGGGAGUACAAGGACUGUAGAGU	chr3:12633048-12633311(-)$1	263	132	172	13.7795
CUGCUGCCACCCUUCCUGAUGCCCAGUGCUAAGAGUGGAA	chr11:61109160-61109403(+)$1	243	63	103	14.2335
GCCGCUACCGCAUGAUCAAGCACGACCGCGACAAGCAUAA	chr1:44451028-44451351(+)$1	323	207	247	15.4995
CUCGACGGCGGGAGAUUGAGGACAAGCUGAAGCAGGUGGG	chr17:74099571-74099814(-)$1	243	66	106	12.8788
CCUUUUUGGACUAUCGGGAUCUAAUCAAGUAAUGGGACGA	chr11:33795740-33796041(-)$1	301	74	114	12.3737
ACAUUCAGAGGCCCAAGGAUCUGGCCUGGCUUCUGAAUGA	chr1:155103644-155103881(+)$1	237	97	137	18.7319
AGAGAGAAUGAGCCAGAGGGACACGCUGGUGCAUCUGUUU	chr3:140660835-140661044(+)$1	209	54	94	13.1479
AUACCACACGGCCGGACAUCGAGGUCAAGGACUGGUGAGU	chr1:11718440-11718718(+)$1	278	211	251	14.9814
GUGGCCCUGCAGGUGAGAGCGCCCUCCCCACCCAGGGCCA	chr19:46351870-46352121(-)$1	251	102	142	14.8327
CGUCUAGGAGUUGAUGGGGUAGGCCUGAGGGUUCGGAGAA	chr19:46519169-46519437(+)$1	268	25	65	12.9477
CUGGCUGGUUAUGAUGUAAGCAGAUAUCACCUCACCCCAC	chr9:117045948-117046170(+)$1	222	79	119	14.6762
UUCCGAGACGGGCUCAAGCUCAUGCUGCUCCUGGAGGUCA	chr19:39191252-39191464(+)$1	212	56	96	12.6332
UGACAUUUAAGGGGCCAGCAUGACUGAUCCUCUUAGAGUU	chr17:40139774-40140077(-)$1	303	32	72	17.6594
CCCGGAGGGAGGGCGAGCGGAGACGCAGGCCGAACCGCCC	chr16:69364545-69364829(-)$1	284	33	73	13.7227
GCGGCCUCCUGCAGCGGGCGGCCCCCUGCAGCCUCCUGCC	chr7:56032272-56032580(+)$1	308	73	113	12.8737
CCUGGGCAAGGAACAGAGGCAAAUUCAGUCCUCUUUGUAG	chr2:218679478-218679736(-)$1	258	163	203	14.5234
GGAGGCUUCUGGGGGAGAGAAGAUCUUACCCCAGAUCUUA	chr6:31935998-31936275(+)$1	277	47	87	13.3027
CCUCCAGGGAGAGGCACGCAGCCGCUGGCUUCUCUUAAGA	chr16:28963433-28963662(+)$1	229	103	143	12.8536
AGUUUUAUUCAAGUUAAGGCAAACUAACUUGUAUACACUU	chr14:62186945-62187256(+)$1	311	80	120	14.0181
CCCAGGGGCCUGUCUGCGUACAAGUGGGGGCAGGGUCCUG	chr1:1572610-1572872(-)$1	262	115	155	12.9569
CCCCUGCCCAGCUGGGCAUUCUGGCCUCAGGACAGGAGUA	chr1:17981156-17981383(+)$1	227	71	111	14.2430
AGGCGCCCAUGGUGGACGAGAAGGUCAUUGUGGGCUCGCU	chr8:22273412-22273672(+)$1	260	8	48	16.0077
AAGUCAGCAAUGUGUCUGCAACCGGAGAGUAAGUUAUUUG	chr4:89711638-89711905(-)$1	267	141	181	13.6449
UUAUCAUUACAAGGCAUCUAAUUGUUCCCUUCAUGUGAUA	chr20:42088283-42088550(+)$1	267	84	124	16.3220
AAUAGAGAUGGUGUCGGCAGGAAGCCCUUGGCCUUGGGUU	chr14:23775980-23776302(+)$1	322	221	261	16.0648
AAGCUCUAUUCCUAGGGUACCUUCCCUAGUGAAUAUCUAG	chr3:170585872-170586121(-)$1	249	116	156	12.7264
GCUUCCCCUGGGAAUCUAAACUGGGAAUGGCCGAGGAGGA	chr19:55556127-55556376(-)$1	249	174	214	15.6329
CCCAAUCUUUGAGUGUUUGGUUAAAUGUUCAAACUGUGGC	chr2:8823676-8823925(+)$1	249	18	58	15.2251
GCAGGGCUGGCGCCGGGCAGGAGCCGGGUCGCAGCGGCUG	chr10:51572392-51572602(+)$1	210	153	193	12.9837
acgugugcgguguguguaguguguacgugugcggugugug	chr17:7011019-7011236(-)$1	217	125	165	14.8039
GUGGGAAGGAUGGGCAGCUCUGGCUUCUCAUGCCUUCUUA	chr19:9728664-9729034(-)$1	370	127	167	14.4389
GCUCUCUGUGCCCUUGAGGUGAACGCGGGGUCAGGCAGGG	chr16:28855882-28856110(-)$1	228	74	114	13.4739
CGUGGCUGGAGGGCUGCCCCUGCGCUCACCUCCUCGCGUU	chr19:49004669-49004940(-)$1	271	71	111	15.1190
UCUGGGCAAAGGCAAGUUUGGAAACGUGUACUUGGCUCGG	chr17:8110574-8110811(-)$1	237	165	205	14.8953
ACCUAAUAGUGCGAUACUAGGAGAGCUGUCGGGCCACAGG	chr20:31017151-31017400(+)$1	249	159	199	13.1689
CCUGUGCUUCUGGCUCAGAAAACUGGCCUCAGCGCAGCCC	chr16:75267721-75267985(-)$1	264	95	135	14.6746
UUGGAGAGUUGACAGGGAUAUGUCUUUGCUUUCUUUAAAG	chr6:74228890-74229129(-)$1	239	138	178	13.2272

#DB
((((...((((((((((.(......).))))))))))...	chr16:56968995-56969277(+)$1	1	17	57	13.9138
(.((((((.(((.(.(((.....)))).))).)))))).)	chr16:67980128-67980436(-)$1	1	148	188	14.3487
)(((.(((..(((...(((....)))...)))...))).)	chr20:31961750-31962021(-)$1	1	202	242	15.8547
((...(((..(((.(......).)))..))))))))))))	chr9:19119688-19119946(-)$1	1	29	69	12.7312
.....(((((((((.(((......))).)))))))))...	chr10:93578927-93579191(+)$1	1	192	232	13.1344
..(((....(((((.(((...))).)))))..)))...))	chr16:2647171-2647432(+)$1	1	140	180	13.7413
..)))))(((((...(((.....)))...)))))((((((	chr2:54891731-54891962(+)$1	1	110	150	13.7118
).((((((((((..(.((......)).)))))))))))))	chr2:173420973-173421224(+)$1	1	108	148	14.3716
(((...(((((....(((.....))))))))...))))))	chr2:10937104-10937345(-)$1	1	64	104	15.7318
((((.(((...(((.((.....)).))))))..)))))))	chr8:145140321-145140583(+)$1	1	97	137	13.9072
((((..(.(((((((((......))))))))))..)))))	chr19:650095-650336(-)$1	1	147	187	15.9106
((((((((((...(((....))))))..))))))))))).	chr17:79952509-79952730(+)$1	1	120	160	13.8882
.(((.((((((((((((......)))))...))))))).)	chr14:24612621-24612861(-)$1	1	51	91	13.6748
)))))(((((((...(((...)))....))))))).((((	chr7:44838661-44838982(+)$1	1	178	218	12.8917
(((((((((.((((.(((...))).)))).)))...))).	chr21:9968375-9968616(-)$1	1	122	162	13.2410
(((((((((((....(((........))))))))))))))	chr18:19208911-19209196(+)$1	1	97	137	13.0862
..((.((((((((((((......).))))))))))).)).	chr11:62413895-62414134(-)$1	1	110	150	15.9835
(((((.(((.((...(((.....))).)).))).))))).	chr3:12633048-12633311(-)$1	1	132	172	13.7795
(((.(.((((.(((((((.....))).)..))).))))).	chr11:61109160-61109403(+)$1	1	63	103	14.2335
...(((..(((..(.((......))).)))...)))....	chr1:44451028-44451351(+)$1	1	207	247	15.4995
((((...((...((.(((....))).))...))...))))	chr17:74099571-74099814(-)$1	1	66	106	12.8788
((...(((..(((((..(((...)))..)..))))..)))	chr11:33795740-33796041(-)$1	1	74	114	12.3737
.((((((((((((..(((......))))))))))))))).	chr1:155103644-155103881(+)$1	1	97	137	18.7319
(((.(((.((.(((((.(.....).))))).))))).)))	chr3:140660835-140661044(+)$1	1	54	94	13.1479
.((((((.(((((.(((......)))..)).)))))).))	chr1:11718440-11718718(+)$1	1	211	251	14.9814
(((((((((..((((.(((....)))..))))))))))))	chr19:46351870-46352121(-)$1	1	102	142	14.8327
(.(((.(((.((..((((.....)))).)).)))..))).	chr19:46519169-46519437(+)$1	1	25	65	12.9477
.(((..(((..((((((......))))))....)))))).	chr9:117045948-117046170(+)$1	1	79	119	14.6762
((((.((..((((...(((....)))))))))))))))).	chr19:39191252-39191464(+)$1	1	56	96	12.6332
.(((.(((((((((.(((.....)))..))))))))))))	chr17:40139774-40140077(-)$1	1	32	72	17.6594
...((.((...(((..(((....)))..)))...)).)))	chr16:69364545-69364829(-)$1	1	33	73	13.7227
(.(((....(((((.(((....))))))))))).)).)))	chr7:56032272-56032580(+)$1	1	73	113	12.8737
((((.(((((((((.(((.....))).))..)))))))..	chr2:218679478-218679736(-)$1	1	163	203	14.5234
((((...(((((((((((.....)))).))))))).....	chr6:31935998-31936275(+)$1	1	47	87	13.3027
.(((..(((((((((..((....))..)))))))))..))	chr16:28963433-28963662(+)$1	1	103	143	12.8536
(((..(((.(((((((.(.....)))))))).))).))))	chr14:62186945-62187256(+)$1	1	80	120	14.0181
.((((((.(((((((.((......)).))))))).)))))	chr1:1572610-1572872(-)$1	1	115	155	12.9569
)((((((((..((((((......))).)))....)).)))	chr1:17981156-17981383(+)$1	1	71	111	14.2430
.(((((((((((((.((......))))))))))))..)))	chr8:22273412-22273672(+)$1	1	8	48	16.0077
((((.(((....(.((((....)))).)....))))))))	chr4:89711638-89711905(-)$1	1	141	181	13.6449
(((((((...((((...(.....)...))))...))))))	chr20:42088283-42088550(+)$1	1	84	124	16.3220
((....((.(((...(((.....)))....)))))....)	chr14:23775980-23776302(+)$1	1	221	261	16.0648
.((((((((((((((((......)))))).)))....)))	chr3:170585872-170586121(-)$1	1	116	156	12.7264
)))((((((.((..(((......)))....)).))).)))	chr19:55556127-55556376(-)$1	1	174	214	15.6329
((((...(((((((((((....))))))))))).)).)))	chr2:8823676-8823925(+)$1	1	18	58	15.2251
)(((.((((..(((.(((....))).)))..))))..)))	chr10:51572392-51572602(+)$1	1	153	193	12.9837
(((((.(((.(((.((((.....))))...))).)))...	chr17:7011019-7011236(-)$1	1	125	165	14.8039
((((((((((((((.(((....))).))))).))))))))	chr19:9728664-9729034(-)$1	1	127	167	14.4389
(((((.(.((.(((((.(.....).))))).)).).))))	chr16:28855882-28856110(-)$1	1	74	114	13.4739
(((((..(((((...((......))...))))))))))))	chr19:49004669-49004940(-)$1	1	71	111	15.1190
(((((((.((((((.(((....))).))).))).))))))	chr17:8110574-8110811(-)$1	1	165	205	14.8953
.(((....((.(((((((.....)).))))).))...)))	chr20:31017151-31017400(+)$1	1	159	199	13.1689
)(((((((...(((.(((....))))))..)))))))(((	chr16:75267721-75267985(-)$1	1	95	135	14.6746
((((((((..(.((((((....))))))).))))))))))	chr6:74228890-74229129(-)$1	1	138	178	13.2272

#PSSM
g : 0.16	e : 0.12	c : 0.11	= : 0.09	! : 0.07	: : 0.07	d : 0.05	b : 0.05	" : 0.05	i : 0.05	f : 0.03	+ : 0.01	m : 0.01	# : 0.01	[ : 0.01	$ : 0.01	
c : 0.24	g : 0.20	= : 0.11	e : 0.09	f : 0.05	[ : 0.05	i : 0.05	d : 0.03	" : 0.03	+ : 0.01	! : 0.01	m : 0.01	: : 0.01	# : 0.01	b : 0.01	
c : 0.27	g : 0.18	= : 0.12	e : 0.11	f : 0.07	" : 0.07	i : 0.05	b : 0.03	+ : 0.01	d : 0.01	# : 0.01	
c : 0.27	g : 0.16	= : 0.11	e : 0.09	f : 0.07	b : 0.07	" : 0.05	i : 0.05	[ : 0.03	+ : 0.01	! : 0.01	# : 0.01	
[ : 0.16	c : 0.14	" : 0.12	= : 0.12	! : 0.07	g : 0.07	f : 0.05	e : 0.05	i : 0.05	b : 0.03	# : 0.03	+ : 0.01	a : 0.01	
c : 0.20	= : 0.14	g : 0.11	[ : 0.11	" : 0.09	i : 0.07	# : 0.07	! : 0.07	f : 0.05	e : 0.01	b : 0.01	d : 0.01	
c : 0.25	= : 0.14	g : 0.11	i : 0.09	" : 0.07	f : 0.05	# : 0.05	b : 0.05	e : 0.03	a : 0.03	d : 0.03	! : 0.03	
c : 0.24	= : 0.14	[ : 0.11	g : 0.11	i : 0.09	b : 0.07	# : 0.05	e : 0.05	d : 0.03	! : 0.03	f : 0.01	" : 0.01	
c : 0.20	= : 0.14	! : 0.09	i : 0.09	g : 0.09	b : 0.09	" : 0.07	[ : 0.05	# : 0.05	e : 0.05	d : 0.03	
! : 0.14	= : 0.12	c : 0.12	e : 0.11	g : 0.11	" : 0.09	[ : 0.09	i : 0.07	b : 0.05	d : 0.03	# : 0.01	
c : 0.16	= : 0.12	e : 0.11	g : 0.11	" : 0.09	i : 0.07	d : 0.07	[ : 0.07	! : 0.07	b : 0.05	# : 0.01	a : 0.01	
c : 0.22	e : 0.14	= : 0.11	g : 0.11	d : 0.09	i : 0.07	b : 0.07	# : 0.05	" : 0.03	f : 0.03	! : 0.01	[ : 0.01	
c : 0.18	e : 0.12	" : 0.11	= : 0.09	d : 0.09	i : 0.07	! : 0.07	b : 0.05	f : 0.05	g : 0.05	# : 0.03	[ : 0.01	a : 0.01	
c : 0.14	" : 0.12	e : 0.12	= : 0.07	[ : 0.07	i : 0.07	! : 0.07	d : 0.07	f : 0.05	g : 0.05	a : 0.03	# : 0.03	b : 0.03	
[ : 0.27	" : 0.14	d : 0.09	a : 0.07	c : 0.07	e : 0.07	= : 0.05	f : 0.05	# : 0.03	i : 0.03	! : 0.03	g : 0.03	
c : 0.44	b : 0.07	e : 0.07	d : 0.07	= : 0.05	" : 0.05	[ : 0.05	! : 0.05	f : 0.05	o : 0.01	i : 0.01	g : 0.01	
c : 0.49	b : 0.12	d : 0.07	[ : 0.05	f : 0.05	= : 0.03	! : 0.03	o : 0.01	i : 0.01	m : 0.01	e : 0.01	a : 0.01	" : 0.01	
c : 0.46	o : 0.22	b : 0.07	a : 0.07	d : 0.07	[ : 0.01	n : 0.01	m : 0.01	= : 0.01	f : 0.01	
n : 0.31	o : 0.29	m : 0.18	c : 0.09	l : 0.05	a : 0.01	q : 0.01	b : 0.01	
o : 0.31	n : 0.31	m : 0.27	l : 0.05	q : 0.01	c : 0.01	
o : 0.31	n : 0.31	m : 0.25	l : 0.07	c : 0.01	q : 0.01	
n : 0.31	o : 0.29	m : 0.25	c : 0.07	a : 0.01	q : 0.01	l : 0.01	
o : 0.29	n : 0.29	c : 0.18	m : 0.09	] : 0.01	b : 0.01	q : 0.01	l : 0.01	d : 0.01	= : 0.01	f : 0.01	
c : 0.49	b : 0.11	o : 0.09	a : 0.09	d : 0.07	f : 0.05	i : 0.01	e : 0.01	q : 0.01	= : 0.01	
c : 0.48	b : 0.12	] : 0.11	d : 0.07	f : 0.05	o : 0.01	i : 0.01	e : 0.01	4 : 0.01	q : 0.01	g : 0.01	3 : 0.01	= : 0.01	
c : 0.40	e : 0.09	d : 0.09	] : 0.09	= : 0.05	f : 0.05	a : 0.03	b : 0.03	3 : 0.03	i : 0.01	4 : 0.01	q : 0.01	2 : 0.01	g : 0.01	
] : 0.16	2 : 0.14	e : 0.14	c : 0.12	d : 0.09	3 : 0.07	4 : 0.05	= : 0.05	f : 0.05	a : 0.01	i : 0.01	b : 0.01	g : 0.01	
e : 0.14	2 : 0.12	c : 0.12	= : 0.09	] : 0.07	3 : 0.07	a : 0.05	4 : 0.05	d : 0.05	b : 0.05	f : 0.05	i : 0.03	g : 0.03	
c : 0.16	e : 0.14	= : 0.12	3 : 0.09	i : 0.07	g : 0.07	d : 0.07	b : 0.07	4 : 0.05	2 : 0.03	a : 0.03	f : 0.03	
e : 0.16	= : 0.14	c : 0.12	] : 0.09	2 : 0.09	i : 0.07	g : 0.07	4 : 0.07	3 : 0.05	d : 0.05	b : 0.03	
c : 0.24	= : 0.14	i : 0.09	e : 0.09	g : 0.09	2 : 0.07	] : 0.07	3 : 0.05	4 : 0.05	d : 0.03	b : 0.03	
c : 0.20	= : 0.14	g : 0.11	i : 0.09	b : 0.09	] : 0.07	d : 0.07	3 : 0.07	4 : 0.05	2 : 0.03	e : 0.03	
c : 0.24	= : 0.16	g : 0.12	3 : 0.09	i : 0.09	b : 0.07	d : 0.05	e : 0.03	4 : 0.03	f : 0.01	2 : 0.01	a : 0.01	] : 0.01	
c : 0.16	= : 0.14	g : 0.14	] : 0.12	3 : 0.11	i : 0.11	d : 0.05	4 : 0.03	b : 0.03	f : 0.01	e : 0.01	2 : 0.01	
= : 0.18	c : 0.16	g : 0.16	i : 0.11	b : 0.09	3 : 0.07	d : 0.07	2 : 0.03	f : 0.01	e : 0.01	] : 0.01	4 : 0.01	a : 0.01	
= : 0.16	g : 0.16	c : 0.12	i : 0.11	b : 0.09	3 : 0.07	2 : 0.07	f : 0.03	] : 0.03	4 : 0.03	: : 0.01	e : 0.01	d : 0.01	> : 0.01	
g : 0.18	= : 0.14	] : 0.12	c : 0.11	i : 0.09	2 : 0.07	f : 0.05	e : 0.05	4 : 0.05	3 : 0.03	b : 0.01	d : 0.01	> : 0.01	
c : 0.24	g : 0.18	= : 0.12	f : 0.09	e : 0.05	i : 0.05	> : 0.03	3 : 0.03	b : 0.03	4 : 0.03	5 : 0.01	d : 0.01	] : 0.01	h : 0.01	2 : 0.01	
c : 0.25	g : 0.14	= : 0.11	f : 0.09	] : 0.05	e : 0.05	i : 0.05	> : 0.03	b : 0.03	4 : 0.03	5 : 0.01	G : 0.01	a : 0.01	h : 0.01	2 : 0.01	3 : 0.01	
c : 0.29	g : 0.14	f : 0.09	= : 0.07	3 : 0.07	5 : 0.05	] : 0.05	> : 0.03	e : 0.03	2 : 0.03	i : 0.03	G : 0.01	4 : 0.01	h : 0.01	

#score	769.4037302670553
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_CDS_m2_run1.txt

#BEAR
Deeeee[bbqqqqqqqqbb]eeeee	chr17:65105280-65105541(-)$1	261	139	164	15.3278
hh####cccqqqqqqqqccchhhhh	chr1:110882728-110882982(+)$1	254	6	31	15.5679
####eeeeeqqqqqqqqeeeeeccc	chr12:49443716-49443971(-)$1	255	169	194	15.6759
!!ccc[cccqqqqqqqqccc]ccc]	chr4:187628208-187628466(-)$1	258	18	43	16.9449
####eeeeeqqqqqqqqeeeee22b	chr15:28510663-28510923(-)$1	260	140	165	15.4179
ggggg[cccqqqqqqqqcccggggg	chr6:144765411-144765615(+)$1	204	98	123	16.8235
iiiiiiibbqqqqqqqqbb4444ii	chr2:21235933-21236137(-)$1	204	39	64	16.1456
eee[eeeeeqqqqqqqqeeeee]ee	chr2:63091885-63092132(+)$1	247	211	236	15.7334
bbccc[cccqqqqqqqqcccccc]b	chr21:46901822-46902038(+)$1	216	138	163	16.2154
!!eeeeebbqqqqqqqqbb]eeeee	chr1:109794345-109794590(+)$1	245	155	180	16.4593
eeee[acccqqqqqqqqccc]a]ee	chr1:19486506-19486715(-)$1	209	146	171	16.8313
ccccc[cccqqqqqqqqcccccc]c	chr14:21550356-21550601(+)$1	245	112	137	16.5334
[eeeee[bbqqqqqqqqbb]eeeee	chr16:2156746-2157011(-)$1	265	95	120	16.3883
gg####cccqqqqqqqqccc22ggg	chr6:144758604-144758864(+)$1	260	78	103	16.5336
:eeeee[bbqqqqqqqqbb]eeeee	chr16:18845559-18845853(-)$1	294	58	83	15.4375
ddd!!ddddqqqqqqqqdddd]ddd	chr2:20251098-20251360(-)$1	262	47	72	14.7323
dddffffffqqqqqqqqffffff33	chr15:86076868-86077196(+)$1	328	169	194	15.0717
bb####cccqqqqqqqqccc4444b	chr2:130832501-130832789(-)$1	288	165	190	16.5552
ffffffcccqqqqqqqqccc]ffff	chr17:62499449-62499719(-)$1	270	177	202	15.6820
bbccc:cccqqqqqqqqcccdddd[	chr12:49431342-49431596(-)$1	254	47	72	14.4155
!!ccc[cccqqqqqqqqcccccc22	chr2:238482988-238483269(-)$1	281	200	225	16.6344
gggggg[bbqqqqqqqqbbgggggg	chr1:19468040-19468266(-)$1	226	152	177	16.0963
bb"""ddddqqqqqqqqdddd4444	chr4:187630126-187630445(-)$1	319	257	282	15.2421
eeeee!!bbqqqqqqqqbb]eeeee	chr8:100025947-100026255(+)$1	308	143	168	16.3605
=========qqqqqqqq========	chr17:3533400-3533625(-)$1	225	105	130	16.7569
!!gggggggqqqqqqqqggggggg4	chr7:98522634-98522860(+)$1	226	165	190	16.3467
[bb[bb[bbqqqqqqqqbb]bb]bb	chr7:5427213-5427496(-)$1	283	169	194	14.2107
:dddd!!bbqqqqqqqqbb22dddd	chr4:79254443-79254666(+)$1	223	185	210	13.8700
eeeeeacccqqqqqqqqccc]a]ee	chr12:26633989-26634194(-)$1	205	17	42	16.7142
!ccc!!cccqqqqqqqqccc]ccc2	chr11:73020613-73020855(+)$1	242	69	94	16.8295
ffff[cccaqqqqqqqqa]cccfff	chr6:168289792-168290028(+)$1	236	6	31	15.3037
ccc[eeeeeqqqqqqqqeeeee]cc	chr6:138754570-138754852(-)$1	282	239	264	15.5304
ddd!!ddddqqqqqqqqdddd]ddd	chr2:20251167-20251499(-)$1	332	186	211	14.7323
dd[ccc[bbqqqqqqqqbb]ccc44	chr6:144757044-144757290(+)$1	246	42	67	15.8800
eee"""cccqqqqqqqqccc333ee	chr20:36640324-36640593(-)$1	269	43	68	17.1095
=========qqqqqqqq========	chr2:152276695-152276944(+)$1	249	220	245	16.7569
c[eeeeebbqqqqqqqqbb]eeeee	chr2:11772131-11772340(+)$1	209	105	130	16.2233
eeee!!cccqqqqqqqqccceeeee	chr3:66023623-66023881(-)$1	258	84	109	17.0206
b!!a[ddddqqqqqqqqdddd]a22	chr10:19676475-19676733(+)$1	258	121	146	15.0576
[bb!!ddddqqqqqqqqdddd22bb	chr17:1657688-1657953(+)$1	265	168	193	14.2673
iiiiiiiiiqqqqqqqqiiiiiiii	chr1:19490646-19490884(-)$1	238	69	94	16.1365
aeeeee[bbqqqqqqqqbb22eeee	chr16:16269693-16269944(-)$1	251	109	134	15.8345
bb[ffffffqqqqqqqqffffff]b	chr9:71852694-71852954(+)$1	260	174	199	14.9362
d[eeeee[aqqqqqqqqa]eeeee]	chr1:156235958-156236204(-)$1	246	162	187	15.7457
"""ffffffqqqqqqqqffffff33	chr10:101563828-101564075(+)$1	247	218	243	15.6933
d[gggggggqqqqqqqqgggggggd	chr6:144820452-144820661(+)$1	209	140	165	15.8967
!a[ffffffqqqqqqqqffffff]a	chr12:112720813-112721030(-)$1	217	112	137	15.5325
bb[ffffffqqqqqqqqffffff]b	chrX:153589607-153589853(-)$1	246	63	88	14.9362
eeee!!cccqqqqqqqqccceeeee	chr9:139371928-139372179(-)$1	251	52	77	17.0206
i$$$$$cccqqqqqqqqccciiiii	chr16:18859201-18859456(-)$1	255	62	87	15.9872
ddgggggggqqqqqqqqggggggg2	chr6:144806530-144806746(+)$1	216	141	166	15.6675
!!bbeeeeeqqqqqqqqeeeee]bb	chr1:39896338-39896589(+)$1	251	185	210	14.9060
###bb[cccqqqqqqqqccc4444b	chr1:19479695-19479933(-)$1	238	112	137	16.3816
eeeeeeeeeqqqqqqqqeeeee777	chr1:36019972-36020220(-)$1	248	160	185	13.7525
eeeee[cccqqqqqqqqccc]eeee	chr16:18851037-18851293(-)$1	256	100	125	16.9417

#otherMatches

#Seq PSSM
CACAGUCUCCUCCUGCAGAAGCUGU	chr17:65105280-65105541(-)$1	261	139	164	15.3278
CCGCCUGGUGCUCUAUGACCGGCCU	chr1:110882728-110882982(+)$1	254	6	31	15.5679
CACCGGUGGCCCCCACACCACCCAC	chr12:49443716-49443971(-)$1	255	169	194	15.6759
AAGCCACAGAUAAAGACCUGGGGCC	chr4:187628208-187628466(-)$1	258	18	43	16.9449
CCUGGCUGUCACUGAGAACGGUACG	chr15:28510663-28510923(-)$1	260	140	165	15.4179
GAAGAACAGGUAUGAAACUGUUUUC	chr6:144765411-144765615(+)$1	204	98	123	16.8235
AGCCUUCGGGCUCGUUACCACAUGA	chr2:21235933-21236137(-)$1	204	39	64	16.1456
AAUUGGAUGAGUAAGUACAUUUCAU	chr2:63091885-63092132(+)$1	247	211	236	15.7334
GGGUGAGUGGGAACCAGCACCACAC	chr21:46901822-46902038(+)$1	216	138	163	16.2154
CCUGGAUGUCAACGACAACAAUCCA	chr1:109794345-109794590(+)$1	245	155	180	16.4593
GGGAACCAACAAAUUUAUUGAGAUC	chr1:19486506-19486715(-)$1	209	146	171	16.8313
GCCAGUGCCACCCCCUGGGCCUGAG	chr14:21550356-21550601(+)$1	245	112	137	16.5334
UCCUUGGAGUGUGUGUCCUGCAAGG	chr16:2156746-2157011(-)$1	265	95	120	16.3883
AACAAUGUCCCUUUCUAGGCUUUUA	chr6:144758604-144758864(+)$1	260	78	103	16.5336
UUAAGUUUCACUGUACAGAUAUUUA	chr16:18845559-18845853(-)$1	294	58	83	15.4375
GGCCCGGCCAAGAAGGAGGCCCGCC	chr2:20251098-20251360(-)$1	262	47	72	14.7323
GUUGGUGCUGGCAUUCAGGCACCUG	chr15:86076868-86077196(+)$1	328	169	194	15.0717
GGCCACCCUGAACCCUAAGGCCAAC	chr2:130832501-130832789(-)$1	288	165	190	16.5552
UAAUGAAAAGGGUUUUAUUUGUCAU	chr17:62499449-62499719(-)$1	270	177	202	15.6820
CCCCCAGCCCACUGAGUGGCCCAGG	chr12:49431342-49431596(-)$1	254	47	72	14.4155
UUUCUGUCCAAUGAGCAGGAAGAUU	chr2:238482988-238483269(-)$1	281	200	225	16.6344
GAGGAGGAGCUUCACAACUCUCCUC	chr1:19468040-19468266(-)$1	226	152	177	16.0963
CAGAACUGGACAGGGACCCAGCAUA	chr4:187630126-187630445(-)$1	319	257	282	15.2421
UCUACAGCUUUCACUAUGGGGUGGA	chr8:100025947-100026255(+)$1	308	143	168	16.3605
GUGUUUUGGAAAACAGGCCAAGGUA	chr17:3533400-3533625(-)$1	225	105	130	16.7569
GUGGGAAGUGAUCAAAUGCUUCCUG	chr7:98522634-98522860(+)$1	226	165	190	16.3467
UCUCUGUCGCUGAGUAACGUCAAAG	chr7:5427213-5427496(-)$1	283	169	194	14.2107
AGACACUGUAAUUAGAAACCUUGUC	chr4:79254443-79254666(+)$1	223	185	210	13.8700
UAGACCUGUAUCGCUACACAUGAGU	chr12:26633989-26634194(-)$1	205	17	42	16.7142
AGAGCCCCUAGAGAAGAAGGACUCC	chr11:73020613-73020855(+)$1	242	69	94	16.8295
AUUUUAUUCAUUCAAAAGCAAUAAA	chr6:168289792-168290028(+)$1	236	6	31	15.3037
AGAUGGGCCACUUCUCAGGUUCCUC	chr6:138754570-138754852(-)$1	282	239	264	15.5304
GGCCCGGCCAAGAAGGAGGCCCGCC	chr2:20251167-20251499(-)$1	332	186	211	14.7323
AGGAGCAUGAGAGUCCCCGAGCUGA	chr6:144757044-144757290(+)$1	246	42	67	15.8800
GUGACAUCUAUACUUGAAGAAUACA	chr20:36640324-36640593(-)$1	269	43	68	17.1095
AUUUUCUGGAUACUGCAUCGGAAGG	chr2:152276695-152276944(+)$1	249	220	245	16.7569
UUGGUGAGUGUCCUUUAACAUCAUC	chr2:11772131-11772340(+)$1	209	105	130	16.2233
AGGCUGGGCGAAGGGGAGCUGCUUC	chr3:66023623-66023881(-)$1	258	84	109	17.0206
UGUGGCUGGCAAAACUCCCAGGCUG	chr10:19676475-19676733(+)$1	258	121	146	15.0576
CUGCCUGGACCAGCCUCUCCACUCA	chr17:1657688-1657953(+)$1	265	168	193	14.2673
GGCCAGUGCAGGUCAAGGUGCUGGU	chr1:19490646-19490884(-)$1	238	69	94	16.1365
CCUGGGACCAGCACCAAGGACCCCA	chr16:16269693-16269944(-)$1	251	109	134	15.8345
CUGACUGGUUUCAAACUGCUAGUAA	chr9:71852694-71852954(+)$1	260	174	199	14.9362
GCCGCCACCCACCCAAAGUUGGUGA	chr1:156235958-156236204(-)$1	246	162	187	15.7457
CCAGAAGAAUAUAAGCUUUCUUUAA	chr10:101563828-101564075(+)$1	247	218	243	15.6933
AUGAUGCCAGCGUAACAUGGCAUUU	chr6:144820452-144820661(+)$1	209	140	165	15.8967
AGCAGGUAUGUUACUCUGUGCUUCC	chr12:112720813-112721030(-)$1	217	112	137	15.5325
GCGCUUCCUGCCCCGUGAGGAAGGG	chrX:153589607-153589853(-)$1	246	63	88	14.9362
AGGAACAGCUAUAUCCUGCUUCCUU	chr9:139371928-139372179(-)$1	251	52	77	17.0206
AAUGUUCAAAAUAUUCCUUGUUCUC	chr16:18859201-18859456(-)$1	255	62	87	15.9872
UCCACGGCAUUUCUCUUUGCUGUGA	chr6:144806530-144806746(+)$1	216	141	166	15.6675
GACACUAUUGGACAAAGGGUGGAUG	chr1:39896338-39896589(+)$1	251	185	210	14.9060
UUCGAAAGCGCAAAACAGCUACAAU	chr1:19479695-19479933(-)$1	238	112	137	16.3816
UGCUUCCUGGAUUUUAUCAGGAUAU	chr1:36019972-36020220(-)$1	248	160	185	13.7525
GGCCCUGCUUUGAAAACAGUUGGGC	chr16:18851037-18851293(-)$1	256	100	125	16.9417

#DB
((((((.((........)).)))))	chr17:65105280-65105541(-)$1	1	139	164	15.3278
((....(((........))))))))	chr1:110882728-110882982(+)$1	1	6	31	15.5679
....(((((........))))))))	chr12:49443716-49443971(-)$1	1	169	194	15.6759
..(((.(((........))).))).	chr4:187628208-187628466(-)$1	1	18	43	16.9449
....(((((........)))))..)	chr15:28510663-28510923(-)$1	1	140	165	15.4179
(((((.(((........))))))))	chr6:144765411-144765615(+)$1	1	98	123	16.8235
(((((((((........))....))	chr2:21235933-21236137(-)$1	1	39	64	16.1456
(((.(((((........))))).))	chr2:63091885-63092132(+)$1	1	211	236	15.7334
(((((.(((........)))))).)	chr21:46901822-46902038(+)$1	1	138	163	16.2154
..(((((((........)).)))))	chr1:109794345-109794590(+)$1	1	155	180	16.4593
((((.((((........))).).))	chr1:19486506-19486715(-)$1	1	146	171	16.8313
(((((.(((........)))))).)	chr14:21550356-21550601(+)$1	1	112	137	16.5334
.(((((.((........)).)))))	chr16:2156746-2157011(-)$1	1	95	120	16.3883
((....(((........)))..)))	chr6:144758604-144758864(+)$1	1	78	103	16.5336
.(((((.((........)).)))))	chr16:18845559-18845853(-)$1	1	58	83	15.4375
(((..((((........)))).)))	chr2:20251098-20251360(-)$1	1	47	72	14.7323
(((((((((........))))))..	chr15:86076868-86077196(+)$1	1	169	194	15.0717
((....(((........)))....)	chr2:130832501-130832789(-)$1	1	165	190	16.5552
(((((((((........))).))))	chr17:62499449-62499719(-)$1	1	177	202	15.6820
))))).(((........)))((((.	chr12:49431342-49431596(-)$1	1	47	72	14.4155
..(((.(((........))))))..	chr2:238482988-238483269(-)$1	1	200	225	16.6344
((((((.((........))))))))	chr1:19468040-19468266(-)$1	1	152	177	16.0963
((...((((........))))....	chr4:187630126-187630445(-)$1	1	257	282	15.2421
(((((..((........)).)))))	chr8:100025947-100026255(+)$1	1	143	168	16.3605
(((((((((........))))))))	chr17:3533400-3533625(-)$1	1	105	130	16.7569
..(((((((........))))))).	chr7:98522634-98522860(+)$1	1	165	190	16.3467
.((.((.((........)).)).))	chr7:5427213-5427496(-)$1	1	169	194	14.2107
.((((..((........))..))))	chr4:79254443-79254666(+)$1	1	185	210	13.8700
(((((((((........))).).))	chr12:26633989-26634194(-)$1	1	17	42	16.7142
.(((..(((........))).))).	chr11:73020613-73020855(+)$1	1	69	94	16.8295
((((.((((........).))))))	chr6:168289792-168290028(+)$1	1	6	31	15.3037
(((.(((((........))))).))	chr6:138754570-138754852(-)$1	1	239	264	15.5304
(((..((((........)))).)))	chr2:20251167-20251499(-)$1	1	186	211	14.7323
((.(((.((........)).)))..	chr6:144757044-144757290(+)$1	1	42	67	15.8800
(((...(((........)))...))	chr20:36640324-36640593(-)$1	1	43	68	17.1095
(((((((((........))))))))	chr2:152276695-152276944(+)$1	1	220	245	16.7569
(.(((((((........)).)))))	chr2:11772131-11772340(+)$1	1	105	130	16.2233
((((..(((........))))))))	chr3:66023623-66023881(-)$1	1	84	109	17.0206
(..(.((((........)))).)..	chr10:19676475-19676733(+)$1	1	121	146	15.0576
.((..((((........))))..))	chr17:1657688-1657953(+)$1	1	168	193	14.2673
(((((((((........))))))))	chr1:19490646-19490884(-)$1	1	69	94	16.1365
((((((.((........))..))))	chr16:16269693-16269944(-)$1	1	109	134	15.8345
((.((((((........)))))).)	chr9:71852694-71852954(+)$1	1	174	199	14.9362
(.(((((.(........).))))).	chr1:156235958-156236204(-)$1	1	162	187	15.7457
...((((((........))))))..	chr10:101563828-101564075(+)$1	1	218	243	15.6933
(.(((((((........))))))))	chr6:144820452-144820661(+)$1	1	140	165	15.8967
.(.((((((........)))))).)	chr12:112720813-112721030(-)$1	1	112	137	15.5325
((.((((((........)))))).)	chrX:153589607-153589853(-)$1	1	63	88	14.9362
((((..(((........))))))))	chr9:139371928-139372179(-)$1	1	52	77	17.0206
(.....(((........))))))))	chr16:18859201-18859456(-)$1	1	62	87	15.9872
(((((((((........))))))).	chr6:144806530-144806746(+)$1	1	141	166	15.6675
..(((((((........))))).))	chr1:39896338-39896589(+)$1	1	185	210	14.9060
...((.(((........)))....)	chr1:19479695-19479933(-)$1	1	112	137	16.3816
(((((((((........)))))...	chr1:36019972-36020220(-)$1	1	160	185	13.7525
(((((.(((........))).))))	chr16:18851037-18851293(-)$1	1	100	125	16.9417

#PSSM
e : 0.16	! : 0.12	b : 0.12	d : 0.12	# : 0.05	g : 0.05	i : 0.05	c : 0.05	[ : 0.05	: : 0.03	f : 0.03	= : 0.03	D : 0.01	h : 0.01	a : 0.01	" : 0.01	
e : 0.23	b : 0.14	! : 0.10	d : 0.10	# : 0.05	g : 0.05	c : 0.05	[ : 0.05	i : 0.03	f : 0.03	= : 0.03	h : 0.01	" : 0.01	a : 0.01	$ : 0.01	
e : 0.29	c : 0.12	# : 0.10	g : 0.09	d : 0.07	[ : 0.07	b : 0.05	i : 0.03	f : 0.03	" : 0.03	= : 0.03	! : 0.01	$ : 0.01	
e : 0.25	c : 0.12	f : 0.12	# : 0.09	g : 0.09	[ : 0.05	! : 0.05	i : 0.03	" : 0.03	= : 0.03	b : 0.03	d : 0.01	a : 0.01	$ : 0.01	
e : 0.29	c : 0.10	! : 0.10	f : 0.10	g : 0.09	# : 0.05	[ : 0.05	i : 0.03	" : 0.03	= : 0.03	b : 0.03	d : 0.01	$ : 0.01	
e : 0.23	[ : 0.12	f : 0.10	d : 0.09	! : 0.09	g : 0.07	# : 0.05	i : 0.03	a : 0.03	= : 0.03	c : 0.03	: : 0.01	b : 0.01	" : 0.01	$ : 0.01	
c : 0.36	e : 0.16	[ : 0.12	d : 0.09	f : 0.09	g : 0.05	i : 0.03	! : 0.03	= : 0.03	
c : 0.36	b : 0.21	e : 0.10	d : 0.09	f : 0.09	g : 0.05	= : 0.03	i : 0.01	[ : 0.01	
c : 0.34	b : 0.21	e : 0.10	d : 0.09	f : 0.09	g : 0.05	= : 0.03	a : 0.03	i : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.34	b : 0.21	e : 0.10	d : 0.09	f : 0.09	g : 0.05	= : 0.03	a : 0.03	i : 0.01	
c : 0.34	b : 0.21	e : 0.10	d : 0.09	f : 0.09	g : 0.05	= : 0.03	] : 0.03	i : 0.01	
c : 0.36	] : 0.14	e : 0.12	d : 0.09	f : 0.09	g : 0.07	= : 0.03	2 : 0.03	4 : 0.01	i : 0.01	
e : 0.27	] : 0.10	d : 0.10	g : 0.09	c : 0.09	f : 0.09	4 : 0.05	2 : 0.05	= : 0.03	i : 0.03	h : 0.01	b : 0.01	3 : 0.01	
e : 0.30	c : 0.12	f : 0.10	g : 0.09	4 : 0.07	] : 0.05	a : 0.03	2 : 0.03	d : 0.03	= : 0.03	i : 0.03	h : 0.01	b : 0.01	3 : 0.01	
e : 0.20	c : 0.12	f : 0.12	g : 0.10	] : 0.10	4 : 0.07	d : 0.07	2 : 0.03	= : 0.03	i : 0.03	h : 0.01	3 : 0.01	a : 0.01	7 : 0.01	
e : 0.27	g : 0.10	] : 0.09	c : 0.07	d : 0.07	4 : 0.07	2 : 0.05	i : 0.05	b : 0.05	3 : 0.03	f : 0.03	= : 0.03	h : 0.01	7 : 0.01	
e : 0.25	b : 0.16	d : 0.07	2 : 0.07	c : 0.05	g : 0.05	i : 0.05	4 : 0.05	] : 0.03	3 : 0.03	f : 0.03	= : 0.03	h : 0.01	[ : 0.01	a : 0.01	7 : 0.01	

#score	870.8071129679655
#seq	55
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF854NXI_HNRNPU_transcript_m3_run2.txt

#BEAR
hhhh[dddd"""ddddmmmmdddd22dddd]hhhh	chr19:56146707-56146980(+)$1	273	142	177	14.6157
###ccc[eeeee!!ccclllccc22eeeee333cc	chr17:70570641-70570888(-)$1	247	164	199	11.9773
:ccc[dddd[a[ddddmmmmdddd]a]dddd]ccc	chr2:241563023-241563290(+)$1	267	95	130	13.6476
d$$$$$dddd!!ddddmmmmdddd22dddd4444d	chr6:41537214-41537479(+)$1	265	170	205	14.8068
"""eeeee[a[bb!!ammmma22bb]aeeeeeggg	chr17:75464954-75465201(+)$1	247	152	187	11.3733
eeee!!eeeee!!cccmmmmccc]eeeee22eeee	chr2:178117703-178117989(-)$1	286	79	114	12.1709
d[a!!ccc####ddddmmmmdddd4444ccc22a]	chr22:31657761-31658088(+)$1	327	275	310	16.4310
ggggggg[bb!!ddddmmmmdddd666666bb]gg	chr20:60623526-60623795(-)$1	269	29	64	11.9208
dddd!!ccc[ddddoooooodddd22ccc22dddd	chr19:39140183-39140487(+)$1	304	164	199	12.2470
ff####ccc####cccmmmmccc333ccc]fffff	chr11:2704183-2704436(-)$1	253	203	238	14.3841
!!ccc[bb[bb[ddddmmmmdddd]bb]bb22ccc	chr22:22118659-22118946(-)$1	287	171	206	13.9062
eccc!!ccc[ccccccmmmmccc]ccc333ccccc	chr6:53381254-53381506(-)$1	252	110	145	12.7491
"""bb[bb"""bb[bbmmmmbb]bb4444bb]bbd	chr11:2713389-2713637(-)$1	248	180	215	10.6647
iiiccc[eeeeeddddmmmmdddd]eeeee]ccc3	chr10:77399396-77399673(+)$1	277	145	180	14.3037
"""ccc[a####ddddmmmmdddd22a]cccdddd	chrX:133082416-133082696(-)$1	280	11	46	17.1609
iiiiiiiiiddddcccmmmmccc333dddd333ii	chr2:153300704-153300967(+)$1	263	211	246	14.5603
[ccc[aeeeee[a[ccclllccc333a]eeeee]a	chr6:2217245-2217584(-)$1	339	118	153	12.3300
#ddddeeeee[eeeeemmmmeeeee]eeeee]ddd	chr11:2713171-2713433(-)$1	262	153	188	11.4239
a[eeeee!!bb[ddddmmmmdddd333bb22eeee	chr2:102349823-102350084(+)$1	261	199	234	15.0878
d"""eeeee[eeeeemmmmeeeee22eeeee22dd	chrX:132947191-132947445(-)$1	254	156	191	11.6335
bb!!dddd[bb[ddddmmmmdddd]bb]dddd]bb	chr11:2700432-2700652(-)$1	220	81	116	12.5201
fffff[a"""cccddddllldddd22ccc333a]f	chr2:54829003-54829266(+)$1	263	178	213	13.7875
fffeeeee!!bb!!cccmmmmccc22bbeeeeecc	chr2:101477930-101478218(+)$1	288	84	119	11.5250
bb[eeeee####ccc[ammmma]ccc4444eeeee	chr17:4915893-4916201(+)$1	308	98	133	11.3266
ffccc[eeeee[ddddmmmmdddd22eeeeeccc:	chr6:41537387-41537672(+)$1	285	183	218	14.4631
###ddddeeeeeddddmmmmdddd333eeeee22d	chr6:3349225-3349537(-)$1	312	135	170	15.0626
###gggggggccc[ammmma]ccc22ggggggg33	chr10:105404893-105405181(-)$1	288	245	280	12.4047
gggg!!bb####ddddmmmmdddd]bb22gggggg	chr19:41771167-41771419(+)$1	252	188	223	14.8961
eeee[a[ccc!!ddddmmmmdddd]ccca]eeeee	chr17:70570577-70570841(-)$1	264	181	216	14.5211
ffffff[a[ccc[cccmmmmcccccc]affffff4	chr20:8455282-8455534(+)$1	252	43	78	11.0261
""dddd[cccddddoooooodddd333ccc333dd	chr20:25528962-25529243(-)$1	281	178	213	13.3793
!ccc"""ccc!!ddddmmmmdddd22cccccc22a	chrX:133072263-133072489(-)$1	226	50	85	15.8653
fffff[dddd!!ddddmmmmdddd22dddd]ffff	chr16:50589010-50589251(+)$1	241	71	106	14.9364
ciiiiiiiii!!a[bbmmmmbb]a22iiiiiiiii	chr17:55390870-55391147(+)$1	277	81	116	13.6377
"eeeeebb####ddddmmmmddddbb]eeeeeddd	chr1:23750454-23750727(-)$1	273	184	219	13.6120
ggggggg####eeeeemmmmeeeee333ggggggg	chrX:132985646-132985899(-)$1	253	163	198	13.9876
!!abb!!dddd[aooooooadddd22bb]a22ddd	chr17:1465385-1465655(-)$1	270	192	227	11.2913
d[iiiiiiiiieeeeemmmmeeeee333iiiiiii	chr10:113961666-113961953(-)$1	287	54	89	13.4433
========="""ddddmmmmdddd333========	chr17:45024424-45024710(+)$1	286	244	279	17.9173
ee[dddd[ddddddddllldddd333dddd]dddd	chr6:52414808-52415193(-)$1	385	187	222	11.6999
cc[ccc[a!!eeeeemmmmeeeee22a]cccccc2	chr11:102047441-102047752(+)$1	311	212	247	12.2739
f[ggggggg[a!!ddddllldddd22a]ggggggg	chr9:116948991-116949272(+)$1	281	59	94	14.3562
======[a####eeeeemmmmeeeeea]=======	chr15:67380642-67380911(+)$1	269	210	245	12.5364
eeee[eeeee!!ddddmmmmdddd]eeeee333ee	chr8:121633397-121633655(-)$1	258	207	242	15.0364
ggggggeeeee!!cccmmmmccc]eeeee]ggggg	chr8:22245069-22245316(+)$1	247	39	74	12.5752
eeee!!ccc####cccmmmmccc4444ccc]eeee	chr11:10529746-10529978(-)$1	232	112	147	14.4116
effffff"""bb!!cccmmmmccc22bb333ffff	chr13:50799434-50799711(+)$1	277	106	141	11.5147
=========eeeeebbmmmmbb]eeeee]======	chr2:36682856-36683147(+)$1	291	212	247	11.6600
"""bb[bb"""bb[bbmmmmbb]bb4444bb]bbd	chr11:2713291-2713589(-)$1	298	132	167	10.6647
####ccc[bb!!ddddmmmmdddd333bb]ccc]e	chr2:135181609-135181903(+)$1	294	49	84	15.7524
ffffccc[ddddddddmmmmdddd22dddd22ccc	chr2:11729616-11729850(+)$1	234	55	90	14.5432
bb!!a[bb!!ddddoooooodddd22bb]a22bb:	chr20:47903832-47904102(+)$1	270	231	266	11.1539

#otherMatches

#Seq PSSM
GUCAAUCGGUCACUCCGGCCGGAGAUCUGAGUGGC	chr19:56146707-56146980(+)$1	273	142	177	14.6157
ACCUGCAGGAGGAAGGGGGACCCAGUCUCUGAAGC	chr17:70570641-70570888(-)$1	247	164	199	11.9773
GGUAGGGGGUGGGCUGGGGACAGCGUUUCCUGUAC	chr2:241563023-241563290(+)$1	267	95	130	13.6476
GAGGCAGGCAGAGCCGCUGGCGGCGGUGCUGAGGC	chr6:41537214-41537479(+)$1	265	170	205	14.8068
gguucaagaugccuucagauguuggggcuugacag	chr17:75464954-75465201(+)$1	247	152	187	11.3733
ugccauuuuaacuagacuuUUCUUUUAAGCAGGUA	chr2:178117703-178117989(-)$1	286	79	114	12.1709
GGUAAACCUUCCCUGCACAAGCAGAAUUGGUCAAG	chr22:31657761-31658088(+)$1	327	275	310	16.4310
CCCAGGGACCGAGGUGGGCACGCCAGGAGAGGGCC	chr20:60623526-60623795(-)$1	269	29	64	11.9208
CUGGAAGCCUCUCGAGGGCGCGAGUUGGUGGCCAG	chr19:39140183-39140487(+)$1	304	164	199	12.2470
UGCACAGCACAAGGGAGAUGUCUGAAUGCACAGUC	chr11:2704183-2704436(-)$1	253	203	238	14.3841
GCCUGUGGAGUGAGGGCUGACCCUGGCCCCUUCAG	chr22:22118659-22118946(-)$1	287	171	206	13.9062
AGGCCAUGUAGGGGACACCUGUCACCCAUGACAGC	chr6:53381254-53381506(-)$1	252	110	145	12.7491
cagguggugaggaagcggguguaucggaaaugacc	chr11:2713389-2713637(-)$1	248	180	215	10.6647
CAAGCAGUAGGUCCAUCUUGGUGGCAUCUGAUGUU	chr10:77399396-77399673(+)$1	277	145	180	14.3037
UAUCUGGUGUAUUUCAUAUAUGAAUAAGCAGCUAG	chrX:133082416-133082696(-)$1	280	11	46	17.1609
GGUGCUUAAAGGCCCCAUUCGGGUUUGCCUCACUU	chr2:153300704-153300967(+)$1	263	211	246	14.5603
GUCAGGUGGGAGGGGGUGCAGCCAGGUGUCCCAGU	chr6:2217245-2217584(-)$1	339	118	153	12.3300
GAGACAUUUGGGGGGUCAGGGCCUCACAGGUGGUC	chr11:2713171-2713433(-)$1	262	153	188	11.4239
CAGGGGAAGUGUAGCUGGUUGGCUUGUCAGCUCCC	chr2:102349823-102350084(+)$1	261	199	234	15.0878
UAAGCAGCUAUCAGGACAUCCUGAAGAGCUGGAAG	chrX:132947191-132947445(-)$1	254	156	191	11.6335
guaguggaauuaggauaugaguucagacuccagac	chr11:2700432-2700652(-)$1	220	81	116	12.5201
CUCAGGUGUAUCAGCUCAUAGAGCAGUGAGAAGGC	chr2:54829003-54829266(+)$1	263	178	213	13.7875
uguuugucagccaggcagucaugugaggggcaggu	chr2:101477930-101478218(+)$1	288	84	119	11.5250
UGGUGCCGAGGGAUGGAGAGGUGUGUGGCACGGCA	chr17:4915893-4916201(+)$1	308	98	133	11.3266
GUUCACAUCCUGUGAGGAGAUUCAAAAGGGUUGGG	chr6:41537387-41537672(+)$1	285	183	218	14.4631
GAAGUGCCCCGCGGCCAGUUGGCCCCAGUGGGAAG	chr6:3349225-3349537(-)$1	312	135	170	15.0626
auguccucagagagcucuuggucuagcugggggac	chr10:105404893-105405181(-)$1	288	245	280	12.4047
GAGAUUGAACUAGGGGGCACCCCCAUCUCUCUUCC	chr19:41771167-41771419(+)$1	252	188	223	14.8961
CUGUCCGUGCAGGCACCUGGGUGCAGCAGAACAGG	chr17:70570577-70570841(-)$1	264	181	216	14.5211
UGGUCUAUGGGCUCUGCAUUUAGGCUGGGGACUAA	chr20:8455282-8455534(+)$1	252	43	78	11.0261
AUGGCCAUCUGCAGAACACCCUGUCCAAGACCAGG	chr20:25528962-25529243(-)$1	281	178	213	13.3793
aguuuaaguuacucuagguauggaaaaauaauaaa	chrX:133072263-133072489(-)$1	226	50	85	15.8653
CCCAGGCUCAAGCUGCCCUGGUAGGAUGGGGUUGG	chr16:50589010-50589251(+)$1	241	71	106	14.9364
AUUAUUCUUGGCUGCCUAGUGGGAAACAAGAGUAG	chr17:55390870-55391147(+)$1	277	81	116	13.6377
AUCCUGCGACCCCACCGCUUGGUGCGUCAGGAGCG	chr1:23750454-23750727(-)$1	273	184	219	13.6120
UUUCAUCAUGGAUUUGCAUGCAAAUAAGGAUGAAG	chrX:132985646-132985899(-)$1	253	163	198	13.9876
AAGUGGACCCGAGGAGAGGCCGGGGACAGCGAGGG	chr17:1465385-1465655(-)$1	270	192	227	11.2913
uGAUUUUUUAAAAAGUGCUGAUUUUGACUUagaga	chr10:113961666-113961953(-)$1	287	54	89	13.4433
GGUUGUUAGUCUCUCUCCCAGGAGCACCUGGCAAC	chr17:45024424-45024710(+)$1	286	244	279	17.9173
ugguggaggguugcagugacugccagaacugucca	chr6:52414808-52415193(-)$1	385	187	222	11.6999
GACUGAAUGAAUUACUAAAGUGAUAGAAUCAUCUU	chr11:102047441-102047752(+)$1	311	212	247	12.2739
uaggccauuugagaaGCAGAGCUUGGCUGGUGGCC	chr9:116948991-116949272(+)$1	281	59	94	14.3562
GGUAGCGAGGGAAACACAGUGGUGUUUGGCUGCUG	chr15:67380642-67380911(+)$1	269	210	245	12.5364
guggguggaucaccugaggucaggaguucaagacc	chr8:121633397-121633655(-)$1	258	207	242	15.0364
CCCCUGCCUUGAAGUUUUUAAACCUGAGGAUAGGG	chr8:22245069-22245316(+)$1	247	39	74	12.5752
CCGCCUGCCCAGUGACAUGCGUUUaacggccgcgg	chr11:10529746-10529978(-)$1	232	112	147	14.4116
GGAAGAAAUAGGUCAAAAGGAUUUCUCCCAGUUCU	chr13:50799434-50799711(+)$1	277	106	141	11.5147
ggucuuucacuuugcacugaugacaaggaugagag	chr2:36682856-36683147(+)$1	291	212	247	11.6600
cagguggugaggaagcggguguaucggaaaugacc	chr11:2713291-2713589(-)$1	298	132	167	10.6647
ccuuuuaguuaagucuuacaggaugaggaguaauu	chr2:135181609-135181903(+)$1	294	49	84	15.7524
gggugugauucuauguagacacauugagaagccau	chr2:11729616-11729850(+)$1	234	55	90	14.5432
AGGAUGACAAAGUGAUUGAACAUUGGGUGGAGCUA	chr20:47903832-47904102(+)$1	270	231	266	11.1539

#DB
((((.((((...((((....))))..)))).))))	chr19:56146707-56146980(+)$1	1	142	177	14.6157
...(((.(((((..(((...)))..)))))...))	chr17:70570641-70570888(-)$1	1	164	199	11.9773
.(((.((((.(.((((....)))).).)))).)))	chr2:241563023-241563290(+)$1	1	95	130	13.6476
(.....((((..((((....))))..))))....)	chr6:41537214-41537479(+)$1	1	170	205	14.8068
...(((((.(.((..(....)..)).)))))))))	chr17:75464954-75465201(+)$1	1	152	187	11.3733
((((..(((((..(((....))).)))))..))))	chr2:178117703-178117989(-)$1	1	79	114	12.1709
(.(..(((....((((....))))....)))..).	chr22:31657761-31658088(+)$1	1	275	310	16.4310
(((((((.((..((((....))))......)).))	chr20:60623526-60623795(-)$1	1	29	64	11.9208
((((..(((.((((......))))..)))..))))	chr19:39140183-39140487(+)$1	1	164	199	12.2470
((....(((....(((....)))...))).)))))	chr11:2704183-2704436(-)$1	1	203	238	14.3841
..(((.((.((.((((....)))).)).))..)))	chr22:22118659-22118946(-)$1	1	171	206	13.9062
((((..(((.((((((....))).)))...)))))	chr6:53381254-53381506(-)$1	1	110	145	12.7491
...((.((...((.((....)).))....)).)))	chr11:2713389-2713637(-)$1	1	180	215	10.6647
((((((.(((((((((....)))).))))).))).	chr10:77399396-77399673(+)$1	1	145	180	14.3037
...(((.(....((((....))))..).)))))))	chrX:133082416-133082696(-)$1	1	11	46	17.1609
((((((((((((((((....)))...))))...))	chr2:153300704-153300967(+)$1	1	211	246	14.5603
.(((.((((((.(.(((...)))...).))))).)	chr6:2217245-2217584(-)$1	1	118	153	12.3300
.(((((((((.(((((....))))).))))).)))	chr11:2713171-2713433(-)$1	1	153	188	11.4239
(.(((((..((.((((....))))...))..))))	chr2:102349823-102350084(+)$1	1	199	234	15.0878
(...(((((.(((((....)))))..)))))..))	chrX:132947191-132947445(-)$1	1	156	191	11.6335
((..((((.((.((((....)))).)).)))).))	chr11:2700432-2700652(-)$1	1	81	116	12.5201
(((((.(...(((((((...))))..)))...).)	chr2:54829003-54829266(+)$1	1	178	213	13.7875
)))(((((..((..(((....)))..)))))))((	chr2:101477930-101478218(+)$1	1	84	119	11.5250
((.(((((....(((.(....).)))....)))))	chr17:4915893-4916201(+)$1	1	98	133	11.3266
))(((.(((((.((((....))))..)))))))).	chr6:41537387-41537672(+)$1	1	183	218	14.4631
...(((((((((((((....))))...)))))..)	chr6:3349225-3349537(-)$1	1	135	170	15.0626
...((((((((((.(....).)))..)))))))..	chr10:105404893-105405181(-)$1	1	245	280	12.4047
((((..((....((((....)))).))..))))))	chr19:41771167-41771419(+)$1	1	188	223	14.8961
((((.(.(((..((((....)))).)))).)))))	chr17:70570577-70570841(-)$1	1	181	216	14.5211
((((((.(.(((.(((....)))))).))))))).	chr20:8455282-8455534(+)$1	1	43	78	11.0261
..((((.(((((((......))))...)))...))	chr20:25528962-25529243(-)$1	1	178	213	13.3793
.(((...(((..((((....))))..))))))..)	chrX:133072263-133072489(-)$1	1	50	85	15.8653
(((((.((((..((((....))))..)))).))))	chr16:50589010-50589251(+)$1	1	71	106	14.9364
)(((((((((..(.((....)).)..)))))))))	chr17:55390870-55391147(+)$1	1	81	116	13.6377
.(((((((....((((....)))))).))))))))	chr1:23750454-23750727(-)$1	1	184	219	13.6120
(((((((....(((((....)))))...)))))))	chrX:132985646-132985899(-)$1	1	163	198	13.9876
..(((..((((.(......)))))..)).)..)))	chr17:1465385-1465655(-)$1	1	192	227	11.2913
(.((((((((((((((....)))))...)))))))	chr10:113961666-113961953(-)$1	1	54	89	13.4433
(((((((((...((((....))))...))))))))	chr17:45024424-45024710(+)$1	1	244	279	17.9173
((.((((.((((((((...))))...)))).))))	chr6:52414808-52415193(-)$1	1	187	222	11.6999
((.(((.(..(((((....)))))..).)))))).	chr11:102047441-102047752(+)$1	1	212	247	12.2739
(.(((((((.(..((((...))))..).)))))))	chr9:116948991-116949272(+)$1	1	59	94	14.3562
((((((.(....(((((....)))))).)))))))	chr15:67380642-67380911(+)$1	1	210	245	12.5364
((((.(((((..((((....)))).)))))...))	chr8:121633397-121633655(-)$1	1	207	242	15.0364
(((((((((((..(((....))).))))).)))))	chr8:22245069-22245316(+)$1	1	39	74	12.5752
((((..(((....(((....)))....))).))))	chr11:10529746-10529978(-)$1	1	112	147	14.4116
(((((((...((..(((....)))..))...))))	chr13:50799434-50799711(+)$1	1	106	141	11.5147
((((((((((((((((....)).))))).))))))	chr2:36682856-36683147(+)$1	1	212	247	11.6600
...((.((...((.((....)).))....)).)))	chr11:2713291-2713589(-)$1	1	132	167	10.6647
....(((.((..((((....))))...)).))).)	chr2:135181609-135181903(+)$1	1	49	84	15.7524
(((((((.((((((((....))))..))))..)))	chr2:11729616-11729850(+)$1	1	55	90	14.5432
((..(.((..((((......))))..)).)..)).	chr20:47903832-47904102(+)$1	1	231	266	11.1539

#PSSM
f : 0.15	e : 0.13	" : 0.11	# : 0.09	d : 0.09	g : 0.07	! : 0.05	b : 0.05	= : 0.05	i : 0.03	c : 0.03	h : 0.01	: : 0.01	[ : 0.01	a : 0.01	
f : 0.15	" : 0.11	e : 0.11	c : 0.09	# : 0.07	[ : 0.07	g : 0.07	i : 0.05	b : 0.05	= : 0.05	d : 0.03	! : 0.03	h : 0.01	$ : 0.01	
c : 0.11	e : 0.11	f : 0.11	# : 0.09	" : 0.09	g : 0.09	i : 0.07	d : 0.05	[ : 0.05	= : 0.05	a : 0.03	! : 0.03	h : 0.01	$ : 0.01	
c : 0.19	e : 0.17	g : 0.11	d : 0.09	f : 0.09	! : 0.05	b : 0.05	i : 0.05	= : 0.05	# : 0.03	h : 0.01	$ : 0.01	" : 0.01	
c : 0.15	e : 0.11	! : 0.11	[ : 0.09	g : 0.09	d : 0.09	f : 0.07	b : 0.05	i : 0.05	= : 0.05	$ : 0.01	# : 0.01	" : 0.01	a : 0.01	
e : 0.15	c : 0.13	[ : 0.13	d : 0.11	! : 0.11	g : 0.09	i : 0.05	= : 0.05	a : 0.03	f : 0.03	$ : 0.01	# : 0.01	" : 0.01	
e : 0.21	[ : 0.15	d : 0.13	c : 0.13	b : 0.11	g : 0.07	i : 0.05	= : 0.03	a : 0.01	" : 0.01	! : 0.01	f : 0.01	
e : 0.24	c : 0.15	d : 0.11	b : 0.11	[ : 0.07	a : 0.07	i : 0.05	" : 0.03	g : 0.03	= : 0.03	! : 0.01	# : 0.01	
e : 0.19	d : 0.13	# : 0.13	c : 0.13	[ : 0.07	" : 0.07	! : 0.07	i : 0.05	b : 0.03	g : 0.03	= : 0.03	
e : 0.19	# : 0.17	" : 0.11	d : 0.11	[ : 0.09	b : 0.09	c : 0.07	! : 0.05	i : 0.03	a : 0.01	g : 0.01	
e : 0.19	# : 0.17	! : 0.15	d : 0.13	b : 0.09	" : 0.07	c : 0.07	a : 0.03	[ : 0.03	i : 0.01	
! : 0.21	e : 0.17	# : 0.15	[ : 0.13	d : 0.11	b : 0.09	c : 0.07	" : 0.03	
d : 0.49	e : 0.13	! : 0.11	c : 0.07	b : 0.05	a : 0.05	# : 0.03	[ : 0.01	
d : 0.51	c : 0.15	e : 0.13	[ : 0.09	! : 0.07	o : 0.01	
d : 0.46	c : 0.23	e : 0.11	o : 0.07	b : 0.07	! : 0.01	a : 0.01	
d : 0.46	c : 0.21	o : 0.07	b : 0.07	e : 0.07	m : 0.05	a : 0.01	[ : 0.01	
m : 0.75	c : 0.07	o : 0.07	d : 0.03	a : 0.01	l : 0.01	e : 0.01	
m : 0.82	l : 0.09	o : 0.07	
m : 0.82	l : 0.09	o : 0.07	
m : 0.76	l : 0.07	o : 0.05	e : 0.03	a : 0.03	d : 0.01	
d : 0.53	c : 0.17	e : 0.09	b : 0.07	m : 0.07	a : 0.01	] : 0.01	
d : 0.53	c : 0.23	e : 0.11	b : 0.07	2 : 0.01	a : 0.01	
d : 0.53	c : 0.23	e : 0.11	] : 0.09	2 : 0.01	
d : 0.51	e : 0.13	c : 0.09	3 : 0.07	b : 0.05	] : 0.05	2 : 0.01	a : 0.01	4 : 0.01	
2 : 0.36	3 : 0.17	] : 0.13	e : 0.13	b : 0.07	c : 0.05	4 : 0.03	6 : 0.01	
2 : 0.34	3 : 0.21	e : 0.13	4 : 0.07	b : 0.07	c : 0.07	] : 0.03	a : 0.01	6 : 0.01	
e : 0.17	b : 0.13	3 : 0.13	d : 0.11	a : 0.11	c : 0.11	4 : 0.09	] : 0.05	6 : 0.01	g : 0.01	i : 0.01	
e : 0.23	d : 0.13	c : 0.13	] : 0.13	b : 0.11	4 : 0.07	3 : 0.05	6 : 0.01	g : 0.01	2 : 0.01	a : 0.01	i : 0.01	= : 0.01	
e : 0.24	c : 0.17	d : 0.15	b : 0.05	4 : 0.05	g : 0.05	] : 0.05	3 : 0.03	i : 0.03	= : 0.03	6 : 0.01	2 : 0.01	a : 0.01	f : 0.01	
e : 0.21	d : 0.15	c : 0.11	] : 0.07	g : 0.07	2 : 0.05	b : 0.05	3 : 0.05	= : 0.05	i : 0.03	a : 0.03	6 : 0.01	4 : 0.01	f : 0.01	
e : 0.19	2 : 0.13	3 : 0.11	c : 0.11	] : 0.09	g : 0.09	b : 0.05	= : 0.05	d : 0.03	f : 0.03	i : 0.03	4 : 0.01	
e : 0.19	2 : 0.11	c : 0.11	3 : 0.09	g : 0.09	] : 0.07	d : 0.07	f : 0.07	= : 0.05	i : 0.03	h : 0.01	4 : 0.01	b : 0.01	
c : 0.15	e : 0.13	g : 0.11	d : 0.11	3 : 0.07	2 : 0.07	f : 0.07	b : 0.05	= : 0.05	] : 0.03	i : 0.03	h : 0.01	4 : 0.01	a : 0.01	
c : 0.17	d : 0.15	g : 0.11	e : 0.11	f : 0.07	b : 0.07	i : 0.05	] : 0.05	= : 0.05	2 : 0.03	h : 0.01	4 : 0.01	a : 0.01	3 : 0.01	
d : 0.23	e : 0.13	c : 0.11	g : 0.11	f : 0.07	i : 0.05	= : 0.05	3 : 0.03	a : 0.03	: : 0.03	h : 0.01	] : 0.01	b : 0.01	4 : 0.01	2 : 0.01	

#score	695.1789459841809
#seq	52
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_transcript_m1_run1.txt

#BEAR
hhhhhh[cccooooooccc]hhh	chr2:62957982-62958285(+)$1	303	259	282	10.0569
hh[hhhhhhhhlllhhhhhhhh]	chr3:186504485-186504698(+)$1	213	11	34	11.4948
==========nnnnn========	chr16:50583734-50583987(+)$1	253	214	237	9.0565
dddd[a[cccmmmmcccaddddh	chr7:158126199-158126482(-)$1	283	58	81	7.9440
hh[hhhhhhhhlllhhhhhhhh]	chr3:186504408-186504612(+)$1	204	88	111	11.4948
!!hhhhhhhhmmmmhhhhhhhh]	chr21:44268652-44268900(-)$1	248	199	222	11.8129
gggg[eeeeemmmmeeeee]ggg	chr3:186794103-186794344(+)$1	241	110	133	8.1328
hh[hhhhhhhhlllhhhhhhhh]	chr3:186504442-186504650(+)$1	208	54	77	11.4948
hhdddd[cccmmmmccc22dddd	chr11:76594356-76594564(+)$1	208	35	58	7.7277
hh[hhhhhhhhlllhhhhhhhh]	chr3:186504413-186504619(+)$1	206	83	106	11.4948
==[gggggggmmmmggggggg]=	chr2:241900839-241901081(-)$1	242	176	199	11.0208
fhhhhhhhhoooooohhhhhhhh	chr19:23507461-23507708(-)$1	247	166	189	10.2782
iiiii!!cccooooooccc]iii	chrX:153063683-153063964(+)$1	281	14	37	10.5281
c[hhhhhhhhmmmmhhhhhhhh]	chr17:75428644-75428898(+)$1	254	37	60	11.7798
==========nnnnn========	chr3:33038273-33038540(-)$1	267	69	92	9.0565
:iiiiiiiiimmmmiiiiiiiii	chr11:68084435-68084715(+)$1	280	1	24	11.2520
eeee[cccccclllccc22ccce	chr16:85838465-85838808(+)$1	343	199	222	8.1676
ccc"""ddddmmmmdddd]ccc2	chr6:43752768-43753032(+)$1	264	49	72	6.9701
iiiiiiiiiooooooiiiiiiii	chr17:94349-94627(-)$1	278	126	149	11.4203
hh[hhhhhhhhlllhhhhhhhh]	chr3:186504450-186504655(+)$1	205	46	69	11.4948
:iiiiiiiiimmmmiiiiiiiii	chr6:64282663-64282912(+)$1	249	118	141	11.2520
hiiiiiiiiimmmmiiiiiiiii	chr7:158055950-158056222(-)$1	272	158	181	12.3415
ggggbb[cccooooooccc]bb]	chr19:893460-893690(+)$1	230	182	205	8.6618
d!!ccc[ddddllldddd]ccc]	chr14:21731679-21731902(-)$1	223	47	70	8.2141
==========mmmm=========	chr5:79946914-79947191(-)$1	277	225	248	11.0212
f[a[bb[cccmmmmccc22bb]a	chr12:123998110-123998381(-)$1	271	34	57	8.2992
==========mmmm=========	chrM:1425-1641(+)$1	216	147	170	11.0212
bhhhhhhhhoooooohhhhhhhh	chr19:33949945-33950234(-)$1	289	257	280	10.2720
!!a[ggggggglllggggggg]a	chr2:20192610-20192904(-)$1	294	189	212	10.0757
c[gggggggoooooogggggggc	chr8:9628306-9628679(+)$1	373	97	120	9.7919
iiiiii[cccmmmmccciiiiii	chr18:43669431-43669704(-)$1	273	99	122	12.0164
gggg[ccc[allla]ccc]gggg	chr12:123997696-123998056(-)$1	360	226	249	9.5601
:iiiiiiiiimmmmiiiiiiiii	chr1:8651552-8651798(-)$1	246	108	131	11.2520
==========mmmm=========	chr19:23507110-23507355(-)$1	245	8	31	11.0212
Aiiiiiiiiimmmmiiiiiiiii	chrX:68892267-68892477(+)$1	210	178	201	11.3056
hh[hhhhhhhhlllhhhhhhhh]	chr3:186504423-186504632(+)$1	209	73	96	11.4948
eeegggggggmmmmggggggg33	chr12:123994731-123995005(-)$1	274	167	190	9.8671
==========mmmm=========	chrM:1452-1654(+)$1	202	120	143	11.0212
eeeee!!cccmmmmccc22eeee	chr7:158223993-158224249(-)$1	256	185	208	7.9859
hh[hhhhhhhhlllhhhhhhhh]	chr3:186504461-186504670(+)$1	209	35	58	11.4948
"""ccc[cccmmmmccc]cccee	chr3:41274968-41275211(+)$1	243	96	119	9.3764
!!hhhhhhhhmmmmhhhhhhhhc	chr17:75212402-75212697(+)$1	295	125	148	11.4015
gggggg[ddddlllddddggggg	chr17:4849841-4850089(-)$1	248	84	107	8.7726
[a[gggggggmmmmggggggga]	chr6:158993834-158994103(+)$1	269	239	262	10.8244
hh[hhhhhhhhlllhhhhhhhh]	chr3:186504436-186504642(+)$1	206	60	83	11.4948
ggggg!!cccooooooccc333g	chr3:52722819-52723070(+)$1	251	170	193	9.1764
ffffbb[cccmmmmccc]bb]ff	chr22:32340728-32340949(-)$1	221	155	178	7.4647
Aiiiiiiiiimmmmiiiiiiiii	chrX:68892277-68892482(+)$1	205	168	191	11.3056
d[ccc!!cccooooooccc22cc	chr1:12644496-12644773(-)$1	277	216	239	8.3043
hh[hhhhhhhhlllhhhhhhhh]	chr3:186504432-186504636(+)$1	204	64	87	11.4948
hhhhhh[ccclllccchhhhhhh	chr1:210827165-210827431(+)$1	266	2	25	10.4691
==========mmmm=========	chrM:1454-1664(+)$1	210	118	141	11.0212
hh[hhhhhhhhlllhhhhhhhh]	chr3:186504455-186504661(+)$1	206	41	64	11.4948

#otherMatches

#Seq PSSM
agaucuuguauauauuuauugga	chr2:62957982-62958285(+)$1	303	259	282	10.0569
GACACUAGGACCAUGUCUUGGUU	chr3:186504485-186504698(+)$1	213	11	34	11.4948
CCCUCUGGGUAGCAGAUCUAGGG	chr16:50583734-50583987(+)$1	253	214	237	9.0565
UGAGUGACCUCUGUGGGCCUCAG	chr7:158126199-158126482(-)$1	283	58	81	7.9440
GACACUAGGACCAUGUCUUGGUU	chr3:186504408-186504612(+)$1	204	88	111	11.4948
AUCGUGUGCUGUGAGGUGCGCGC	chr21:44268652-44268900(-)$1	248	199	222	11.8129
UUCCCUCUCCAUGuggagaugga	chr3:186794103-186794344(+)$1	241	110	133	8.1328
GACACUAGGACCAUGUCUUGGUU	chr3:186504442-186504650(+)$1	208	54	77	11.4948
uucuugaacauacuuguaauagg	chr11:76594356-76594564(+)$1	208	35	58	7.7277
GACACUAGGACCAUGUCUUGGUU	chr3:186504413-186504619(+)$1	206	83	106	11.4948
ugugugugcacgucuguaugccu	chr2:241900839-241901081(-)$1	242	176	199	11.0208
ucaggugugaugggccacgccug	chr19:23507461-23507708(-)$1	247	166	189	10.2782
UGGUUCCCCUGGCGGAAGGUGAC	chrX:153063683-153063964(+)$1	281	14	37	10.5281
CGUUUUCUGAGCUGUUAGAGGAA	chr17:75428644-75428898(+)$1	254	37	60	11.7798
CCACAUUUCACUGAUUGGAAUGU	chr3:33038273-33038540(-)$1	267	69	92	9.0565
AGGCCCUGGCGGGAGCCGGGGCU	chr11:68084435-68084715(+)$1	280	1	24	11.2520
GAGAAGGCCUCCUGGAGCAGCCU	chr16:85838465-85838808(+)$1	343	199	222	8.1676
CUCAGAUCCUGACAGGGAAGAGG	chr6:43752768-43753032(+)$1	264	49	72	6.9701
CCAUGCUCUUGCAGUAGAGUGUG	chr17:94349-94627(-)$1	278	126	149	11.4203
GACACUAGGACCAUGUCUUGGUU	chr3:186504450-186504655(+)$1	205	46	69	11.4948
UGGCCGGCCGAUUGCGGCCGGCU	chr6:64282663-64282912(+)$1	249	118	141	11.2520
ugcaugugugugCUCAUAUGUGU	chr7:158055950-158056222(-)$1	272	158	181	12.3415
gcuggaaugcaauggcgcgaucu	chr19:893460-893690(+)$1	230	182	205	8.6618
AACUUGGUGUGCACUACAGCAAA	chr14:21731679-21731902(-)$1	223	47	70	8.2141
UAAGUGUACUGGAAAGUGCACUU	chr5:79946914-79947191(-)$1	277	225	248	11.0212
GUGUGUAUGAUGGCUCACAACUC	chr12:123998110-123998381(-)$1	271	34	57	8.2992
UAAGUGUACUGGAAAGUGCACUU	chrM:1425-1641(+)$1	216	147	170	11.0212
CAGUCCCUUGUGAGUGAGGGGCU	chr19:33949945-33950234(-)$1	289	257	280	10.2720
CUGCAGAAUCAGCAUGAUUCUUC	chr2:20192610-20192904(-)$1	294	189	212	10.0757
ugagcacaugagcggauguguug	chr8:9628306-9628679(+)$1	373	97	120	9.7919
AUUAAGGCUGUGGAUAGCUUGGU	chr18:43669431-43669704(-)$1	273	99	122	12.0164
AGUUUGUGGCUUUGGCACUGACU	chr12:123997696-123998056(-)$1	360	226	249	9.5601
GCCAGGAGGCAACUGCUUCCUGG	chr1:8651552-8651798(-)$1	246	108	131	11.2520
uauguauauacguauauauauau	chr19:23507110-23507355(-)$1	245	8	31	11.0212
ccgggcgugguggcucacgccug	chrX:68892267-68892477(+)$1	210	178	201	11.3056
GACACUAGGACCAUGUCUUGGUU	chr3:186504423-186504632(+)$1	209	73	96	11.4948
CAGCACUGCUCUGCAGCAGUGUC	chr12:123994731-123995005(-)$1	274	167	190	9.8671
UAAGUGUACUGGAAAGUGCACUU	chrM:1452-1654(+)$1	202	120	143	11.0212
ugugccuggucuaagcccagugc	chr7:158223993-158224249(-)$1	256	185	208	7.9859
GACACUAGGACCAUGUCUUGGUU	chr3:186504461-186504670(+)$1	209	35	58	11.4948
UCAGAUGAUAUAAAUGUGGUCAC	chr3:41274968-41275211(+)$1	243	96	119	9.3764
uuagUAGCGCGUCUGUGCUGCUU	chr17:75212402-75212697(+)$1	295	125	148	11.4015
UGGGGAAUUUAGCAUGGAUCUUC	chr17:4849841-4850089(-)$1	248	84	107	8.7726
guguauguaugugugugCAUGAG	chr6:158993834-158994103(+)$1	269	239	262	10.8244
GACACUAGGACCAUGUCUUGGUU	chr3:186504436-186504642(+)$1	206	60	83	11.4948
AUGCCAGUACUCUCUUGUGGAAG	chr3:52722819-52723070(+)$1	251	170	193	9.1764
GGAGGCCAUGUCGUCGUAGCGCU	chr22:32340728-32340949(-)$1	221	155	178	7.4647
ccgggcgugguggcucacgccug	chrX:68892277-68892482(+)$1	205	168	191	11.3056
UGCUGGGCACUGGGAUGUGAACG	chr1:12644496-12644773(-)$1	277	216	239	8.3043
GACACUAGGACCAUGUCUUGGUU	chr3:186504432-186504636(+)$1	204	64	87	11.4948
CCUUCUGCUUGUUGAGGGAGGGU	chr1:210827165-210827431(+)$1	266	2	25	10.4691
UAAGUGUACUGGAAAGUGCACUU	chrM:1454-1664(+)$1	210	118	141	11.0212
GACACUAGGACCAUGUCUUGGUU	chr3:186504455-186504661(+)$1	206	41	64	11.4948

#DB
((((((.(((......))).)))	chr2:62957982-62958285(+)$1	1	259	282	10.0569
((.((((((((...)))))))).	chr3:186504485-186504698(+)$1	1	11	34	11.4948
((((((((((.....))))))))	chr16:50583734-50583987(+)$1	1	214	237	9.0565
((((.(.(((....)))))))))	chr7:158126199-158126482(-)$1	1	58	81	7.9440
((.((((((((...)))))))).	chr3:186504408-186504612(+)$1	1	88	111	11.4948
..((((((((....)))))))).	chr21:44268652-44268900(-)$1	1	199	222	11.8129
((((.(((((....))))).)))	chr3:186794103-186794344(+)$1	1	110	133	8.1328
((.((((((((...)))))))).	chr3:186504442-186504650(+)$1	1	54	77	11.4948
((((((.(((....)))..))))	chr11:76594356-76594564(+)$1	1	35	58	7.7277
((.((((((((...)))))))).	chr3:186504413-186504619(+)$1	1	83	106	11.4948
((.(((((((....))))))).)	chr2:241900839-241901081(-)$1	1	176	199	11.0208
)((((((((......))))))))	chr19:23507461-23507708(-)$1	1	166	189	10.2782
(((((..(((......))).)))	chrX:153063683-153063964(+)$1	1	14	37	10.5281
(.((((((((....)))))))).	chr17:75428644-75428898(+)$1	1	37	60	11.7798
((((((((((.....))))))))	chr3:33038273-33038540(-)$1	1	69	92	9.0565
.(((((((((....)))))))))	chr11:68084435-68084715(+)$1	1	1	24	11.2520
((((.((((((...)))..))))	chr16:85838465-85838808(+)$1	1	199	222	8.1676
(((...((((....)))).))).	chr6:43752768-43753032(+)$1	1	49	72	6.9701
(((((((((......))))))))	chr17:94349-94627(-)$1	1	126	149	11.4203
((.((((((((...)))))))).	chr3:186504450-186504655(+)$1	1	46	69	11.4948
.(((((((((....)))))))))	chr6:64282663-64282912(+)$1	1	118	141	11.2520
)(((((((((....)))))))))	chr7:158055950-158056222(-)$1	1	158	181	12.3415
((((((.(((......))).)).	chr19:893460-893690(+)$1	1	182	205	8.6618
(..(((.((((...)))).))).	chr14:21731679-21731902(-)$1	1	47	70	8.2141
((((((((((....)))))))))	chr5:79946914-79947191(-)$1	1	225	248	11.0212
(.(.((.(((....)))..)).)	chr12:123998110-123998381(-)$1	1	34	57	8.2992
((((((((((....)))))))))	chrM:1425-1641(+)$1	1	147	170	11.0212
)((((((((......))))))))	chr19:33949945-33950234(-)$1	1	257	280	10.2720
..(.(((((((...))))))).)	chr2:20192610-20192904(-)$1	1	189	212	10.0757
(.(((((((......))))))))	chr8:9628306-9628679(+)$1	1	97	120	9.7919
((((((.(((....)))))))))	chr18:43669431-43669704(-)$1	1	99	122	12.0164
((((.(((.(...).))).))))	chr12:123997696-123998056(-)$1	1	226	249	9.5601
.(((((((((....)))))))))	chr1:8651552-8651798(-)$1	1	108	131	11.2520
((((((((((....)))))))))	chr19:23507110-23507355(-)$1	1	8	31	11.0212
)(((((((((....)))))))))	chrX:68892267-68892477(+)$1	1	178	201	11.3056
((.((((((((...)))))))).	chr3:186504423-186504632(+)$1	1	73	96	11.4948
((((((((((....)))))))..	chr12:123994731-123995005(-)$1	1	167	190	9.8671
((((((((((....)))))))))	chrM:1452-1654(+)$1	1	120	143	11.0212
(((((..(((....)))..))))	chr7:158223993-158224249(-)$1	1	185	208	7.9859
((.((((((((...)))))))).	chr3:186504461-186504670(+)$1	1	35	58	11.4948
...(((.(((....))).)))))	chr3:41274968-41275211(+)$1	1	96	119	9.3764
..((((((((....)))))))))	chr17:75212402-75212697(+)$1	1	125	148	11.4015
((((((.((((...)))))))))	chr17:4849841-4850089(-)$1	1	84	107	8.7726
.(.(((((((....)))))))).	chr6:158993834-158994103(+)$1	1	239	262	10.8244
((.((((((((...)))))))).	chr3:186504436-186504642(+)$1	1	60	83	11.4948
(((((..(((......)))...)	chr3:52722819-52723070(+)$1	1	170	193	9.1764
((((((.(((....))).)).))	chr22:32340728-32340949(-)$1	1	155	178	7.4647
)(((((((((....)))))))))	chrX:68892277-68892482(+)$1	1	168	191	11.3056
(.(((..(((......)))..))	chr1:12644496-12644773(-)$1	1	216	239	8.3043
((.((((((((...)))))))).	chr3:186504432-186504636(+)$1	1	64	87	11.4948
((((((.(((...))))))))))	chr1:210827165-210827431(+)$1	1	2	25	10.4691
((((((((((....)))))))))	chrM:1454-1664(+)$1	1	118	141	11.0212
((.((((((((...)))))))).	chr3:186504455-186504661(+)$1	1	41	64	11.4948

#PSSM
h : 0.26	= : 0.15	g : 0.09	d : 0.05	! : 0.05	f : 0.05	i : 0.05	c : 0.05	: : 0.05	e : 0.05	A : 0.03	b : 0.01	" : 0.01	[ : 0.01	
h : 0.28	i : 0.16	= : 0.15	g : 0.09	! : 0.07	[ : 0.07	e : 0.05	d : 0.01	c : 0.01	" : 0.01	a : 0.01	f : 0.01	
[ : 0.22	i : 0.16	h : 0.13	= : 0.13	g : 0.11	e : 0.05	d : 0.03	c : 0.03	a : 0.03	! : 0.01	" : 0.01	f : 0.01	
h : 0.32	g : 0.16	i : 0.16	= : 0.13	c : 0.05	d : 0.03	e : 0.03	[ : 0.03	" : 0.01	f : 0.01	
h : 0.32	i : 0.16	= : 0.13	g : 0.13	[ : 0.07	b : 0.05	c : 0.05	d : 0.01	" : 0.01	e : 0.01	
h : 0.32	i : 0.15	= : 0.13	g : 0.11	! : 0.07	c : 0.07	b : 0.05	a : 0.01	e : 0.01	d : 0.01	" : 0.01	
h : 0.28	[ : 0.20	= : 0.13	i : 0.13	g : 0.09	! : 0.07	c : 0.03	e : 0.01	d : 0.01	
c : 0.28	h : 0.28	= : 0.13	i : 0.13	g : 0.09	d : 0.05	e : 0.01	
h : 0.28	c : 0.26	= : 0.13	i : 0.13	g : 0.09	d : 0.05	e : 0.01	[ : 0.01	
c : 0.26	h : 0.24	= : 0.13	i : 0.11	g : 0.07	o : 0.07	d : 0.05	e : 0.01	a : 0.01	
m : 0.49	h : 0.18	o : 0.16	n : 0.03	d : 0.03	l : 0.03	c : 0.01	g : 0.01	
m : 0.49	l : 0.30	o : 0.16	n : 0.03	
m : 0.49	l : 0.30	o : 0.16	n : 0.03	
m : 0.49	l : 0.26	o : 0.16	n : 0.03	a : 0.01	c : 0.01	
h : 0.24	o : 0.16	c : 0.16	i : 0.11	= : 0.09	g : 0.07	d : 0.05	n : 0.03	e : 0.01	] : 0.01	
h : 0.28	c : 0.18	= : 0.13	i : 0.13	o : 0.09	g : 0.09	d : 0.05	e : 0.01	
h : 0.30	c : 0.26	= : 0.13	i : 0.13	g : 0.09	d : 0.05	e : 0.01	
h : 0.30	i : 0.15	= : 0.13	c : 0.11	g : 0.09	2 : 0.07	d : 0.05	] : 0.03	a : 0.01	e : 0.01	
h : 0.30	i : 0.15	= : 0.13	c : 0.11	g : 0.11	2 : 0.07	] : 0.05	d : 0.01	e : 0.01	b : 0.01	
h : 0.30	i : 0.15	= : 0.13	g : 0.13	] : 0.07	c : 0.07	d : 0.03	b : 0.03	e : 0.01	3 : 0.01	2 : 0.01	
h : 0.32	i : 0.16	g : 0.15	= : 0.13	c : 0.07	d : 0.03	b : 0.03	e : 0.01	3 : 0.01	] : 0.01	2 : 0.01	
h : 0.32	i : 0.16	= : 0.13	g : 0.07	c : 0.07	] : 0.05	d : 0.03	3 : 0.03	e : 0.03	b : 0.01	a : 0.01	f : 0.01	
] : 0.28	i : 0.16	= : 0.15	h : 0.09	g : 0.07	e : 0.05	c : 0.05	a : 0.03	d : 0.01	2 : 0.01	3 : 0.01	f : 0.01	

#score	543.2511152543846
#seq	53
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF259NLI_TARDBP_CDS_m3_run1.txt

#BEAR
=eeeeeooooooeeeee	chr10:120802049-120802341(-)$1	292	92	109	10.4707
"""cccooooooccc]d	chr2:232577058-232577322(+)$1	264	196	213	11.1330
iiiiiiooooooiiiii	chr9:100777545-100777748(+)$1	203	27	44	11.2099
ggg[bboooooobbggg	chr2:152346402-152346705(+)$1	303	136	153	10.6962
bb[cccooooooccc]b	chr11:18425157-18425431(+)$1	274	8	25	10.8513
ccddddoooooodddd4	chr11:67018063-67018383(+)$1	320	78	95	10.0500
b[ddddoooooodddd]	chr11:5443278-5443570(-)$1	292	1	18	10.1964
ddddbboooooobb]dd	chr1:76260182-76260467(+)$1	285	11	28	9.6443
:ccc[aooooooa]ccc	chr1:44445565-44445866(+)$1	301	64	81	10.1539
ffffffoooooofffff	chr15:91503025-91503328(+)$1	303	142	159	11.2354
!!ddddoooooodddd2	chr8:101724873-101725117(-)$1	244	135	152	10.0495
fff[bboooooobb]ff	chr3:183898628-183898873(+)$1	245	154	171	10.5482
ffffffoooooofffff	chr15:45007753-45007966(+)$1	213	152	169	11.2354
ggggggooooooggggg	chr3:195792286-195792497(-)$1	211	156	173	11.3976
ffffffoooooofffff	chr10:71973131-71973391(-)$1	260	236	253	11.2354
[a!!bboooooobb22a	chr6:42994712-42994971(+)$1	259	206	223	9.9125
ggggggooooooggggg	chr8:101725244-101725477(-)$1	233	14	31	11.3976
ecccbboooooobb]cc	chr1:32375536-32375793(-)$1	257	80	97	10.2521
ffffffoooooofffff	chr7:6075104-6075364(-)$1	260	61	78	11.2354
ceeeeeooooooeeeee	chr11:18425152-18425357(+)$1	205	172	189	10.4249
ffffffoooooofffff	chr15:45007766-45008001(+)$1	235	139	156	11.2354
ggggggooooooggggg	chr3:157820556-157820842(-)$1	286	149	166	11.3976
ffffffoooooofffff	chr6:122779562-122779827(-)$1	265	52	69	11.2354
ffffffoooooofffff	chr17:55187229-55187519(+)$1	290	10	27	11.2354
b[bb[aooooooa]bb]	chr10:33200861-33201105(-)$1	244	51	68	9.9350
"""cccooooooccc33	chr7:6074949-6075277(-)$1	328	198	215	11.2191
deeeeeooooooeeeee	chr11:18425142-18425347(+)$1	205	182	199	10.2610
a[ddddoooooodddd]	chr10:33200766-33201037(-)$1	271	232	249	10.2963
ffffffoooooofffff	chr2:55462533-55462792(+)$1	259	23	40	11.2354
$a[cccooooooccc]a	chr7:50444242-50444493(+)$1	251	225	242	11.1632
dd:cccoooooocccdd	chr11:47379875-47380255(-)$1	380	287	304	9.6827
hhhhhhoooooohhhhh	chr17:76117682-76117980(-)$1	298	191	208	9.4061
hhhh[aooooooa22hh	chr1:76254755-76255051(+)$1	296	128	145	9.6176
ffff[aooooooa]fff	chr4:129193414-129193639(-)$1	225	46	63	11.2628
bb[cccooooooccc]b	chr17:17942628-17942926(+)$1	298	194	211	10.8513
dd[cccoooooocccdd	chr7:889061-889332(+)$1	271	227	244	10.9061
ffffffoooooofffff	chr12:22217960-22218225(+)$1	265	204	221	11.2354
dd[cccoooooocccdd	chr17:40717395-40717666(+)$1	271	121	138	10.9061
gggg[aooooooagggg	chr22:24439214-24439499(+)$1	285	135	152	11.4693
[eeeeeooooooeeeee	chr7:50444218-50444442(+)$1	224	146	163	10.5081
:ffffffooooooffff	chr20:62562304-62562574(+)$1	270	67	84	8.5149
iiiiiiooooooiiiii	chr9:100777553-100777784(+)$1	231	19	36	11.2099
ccccccooooooccc22	chr10:73578338-73578582(-)$1	244	191	208	10.8973
[eeeeeooooooeeeee	chr16:68119686-68119986(+)$1	300	137	154	10.5081
iiiiiiooooooiiiii	chr1:52135157-52135415(+)$1	258	226	243	11.2099
b[ddddoooooodddd]	chr10:38344278-38344531(+)$1	253	79	96	10.1964

#otherMatches

#Seq PSSM
GGUCUCAUAGAAGAGAU	chr10:120802049-120802341(-)$1	292	92	109	10.4707
UUUGGCAUCUGGGUCUC	chr2:232577058-232577322(+)$1	264	196	213	11.1330
GUUGCCUCCAUUGGCAA	chr9:100777545-100777748(+)$1	203	27	44	11.2099
AACUGAAGAUGAUCGUU	chr2:152346402-152346705(+)$1	303	136	153	10.6962
GAAUUAGGAAAAUGAAU	chr11:18425157-18425431(+)$1	274	8	25	10.8513
CGGGGCAGUUGGGCUCA	chr11:67018063-67018383(+)$1	320	78	95	10.0500
UGGUGGUAUUGCCCAUG	chr11:5443278-5443570(-)$1	292	1	18	10.1964
GGUGGAUCCUUUUCAUA	chr1:76260182-76260467(+)$1	285	11	28	9.6443
GGUGGGAAUGUCUGCAC	chr1:44445565-44445866(+)$1	301	64	81	10.1539
GGGCAGCUGGCCCUGCC	chr15:91503025-91503328(+)$1	303	142	159	11.2354
AAAACAAAUUUAUGUUG	chr8:101724873-101725117(-)$1	244	135	152	10.0495
UCUCACGACAAAGUUGG	chr3:183898628-183898873(+)$1	245	154	171	10.5482
CUUACAUUCUUUUGUAA	chr15:45007753-45007966(+)$1	213	152	169	11.2354
GGAGUUAUUAAAGGCUU	chr3:195792286-195792497(-)$1	211	156	173	11.3976
UAUAAUGACAGAAUUGU	chr10:71973131-71973391(-)$1	260	236	253	11.2354
GUGAAAAAACAGUUGAA	chr6:42994712-42994971(+)$1	259	206	223	9.9125
UAUAACGUGAAUGUUGU	chr8:101725244-101725477(-)$1	233	14	31	11.3976
GGCACCUGUGCUGGUUG	chr1:32375536-32375793(-)$1	257	80	97	10.2521
AUAGCAACCAUAUGCUA	chr7:6075104-6075364(-)$1	260	61	78	11.2354
AGUGGAAAGAGGUUCAC	chr11:18425152-18425357(+)$1	205	172	189	10.4249
CUUACAUUCUUUUGUAA	chr15:45007766-45008001(+)$1	235	139	156	11.2354
CUGGGGUGCCCCCUCCA	chr3:157820556-157820842(-)$1	286	149	166	11.3976
AGUGGAAACAACUCCAC	chr6:122779562-122779827(-)$1	265	52	69	11.2354
GACUGUAAGUUGACAGU	chr17:55187229-55187519(+)$1	290	10	27	11.2354
AGGUGCAAUGAAGGGCG	chr10:33200861-33201105(-)$1	244	51	68	9.9350
UGUCCCUAGAAUGGGUA	chr7:6074949-6075277(-)$1	328	198	215	11.2191
AGUGGAAAGAGGUUCAC	chr11:18425142-18425347(+)$1	205	182	199	10.2610
AGGGCCUGAAGUGGUUG	chr10:33200766-33201037(-)$1	271	232	249	10.2963
UUUUCAGGUGGAUGAGA	chr2:55462533-55462792(+)$1	259	23	40	11.2354
UGGUUCACAAAAGAAGC	chr7:50444242-50444493(+)$1	251	225	242	11.1632
cagugcgugugagcagc	chr11:47379875-47380255(-)$1	380	287	304	9.6827
CUGCUGGCCGAGUGGCA	chr17:76117682-76117980(-)$1	298	191	208	9.4061
AUUGGGGUCUGACAGUA	chr1:76254755-76255051(+)$1	296	128	145	9.6176
AGAUGAAUAUGAUGAUC	chr4:129193414-129193639(-)$1	225	46	63	11.2628
UGGGAGGCCCUGCUCGC	chr17:17942628-17942926(+)$1	298	194	211	10.8513
CACACGCUGUCAUGUUG	chr7:889061-889332(+)$1	271	227	244	10.9061
GGUGGCCGUGGUGCCAU	chr12:22217960-22218225(+)$1	265	204	221	11.2354
UGUGUUGCUUGAAGCCG	chr17:40717395-40717666(+)$1	271	121	138	10.9061
CUUGUGUCGCUUCCAGG	chr22:24439214-24439499(+)$1	285	135	152	11.4693
CAAGGCAGCUCGGCUUU	chr7:50444218-50444442(+)$1	224	146	163	10.5081
AGGGGUGAGUGCCCGCC	chr20:62562304-62562574(+)$1	270	67	84	8.5149
GUUGCCUCCAUUGGCAA	chr9:100777553-100777784(+)$1	231	19	36	11.2099
ACAGCAGCCCAGUGCAA	chr10:73578338-73578582(-)$1	244	191	208	10.8973
GUUAAAAACGGAUUUAA	chr16:68119686-68119986(+)$1	300	137	154	10.5081
CUGUGGAUCUGGCUGCA	chr1:52135157-52135415(+)$1	258	226	243	11.2099
ACAGGGCUGAAACCCUA	chr10:38344278-38344531(+)$1	253	79	96	10.1964

#DB
)(((((......)))))	chr10:120802049-120802341(-)$1	1	92	109	10.4707
...(((......))).)	chr2:232577058-232577322(+)$1	1	196	213	11.1330
((((((......)))))	chr9:100777545-100777748(+)$1	1	27	44	11.2099
(((.((......)))))	chr2:152346402-152346705(+)$1	1	136	153	10.6962
((.(((......))).)	chr11:18425157-18425431(+)$1	1	8	25	10.8513
((((((......)))).	chr11:67018063-67018383(+)$1	1	78	95	10.0500
(.((((......)))).	chr11:5443278-5443570(-)$1	1	1	18	10.1964
((((((......)).))	chr1:76260182-76260467(+)$1	1	11	28	9.6443
.(((.(......).)))	chr1:44445565-44445866(+)$1	1	64	81	10.1539
((((((......)))))	chr15:91503025-91503328(+)$1	1	142	159	11.2354
..((((......)))).	chr8:101724873-101725117(-)$1	1	135	152	10.0495
(((.((......)).))	chr3:183898628-183898873(+)$1	1	154	171	10.5482
((((((......)))))	chr15:45007753-45007966(+)$1	1	152	169	11.2354
((((((......)))))	chr3:195792286-195792497(-)$1	1	156	173	11.3976
((((((......)))))	chr10:71973131-71973391(-)$1	1	236	253	11.2354
.(..((......))..)	chr6:42994712-42994971(+)$1	1	206	223	9.9125
((((((......)))))	chr8:101725244-101725477(-)$1	1	14	31	11.3976
((((((......)).))	chr1:32375536-32375793(-)$1	1	80	97	10.2521
((((((......)))))	chr7:6075104-6075364(-)$1	1	61	78	11.2354
)(((((......)))))	chr11:18425152-18425357(+)$1	1	172	189	10.4249
((((((......)))))	chr15:45007766-45008001(+)$1	1	139	156	11.2354
((((((......)))))	chr3:157820556-157820842(-)$1	1	149	166	11.3976
((((((......)))))	chr6:122779562-122779827(-)$1	1	52	69	11.2354
((((((......)))))	chr17:55187229-55187519(+)$1	1	10	27	11.2354
(.((.(......).)).	chr10:33200861-33201105(-)$1	1	51	68	9.9350
...(((......)))..	chr7:6074949-6075277(-)$1	1	198	215	11.2191
)(((((......)))))	chr11:18425142-18425347(+)$1	1	182	199	10.2610
(.((((......)))).	chr10:33200766-33201037(-)$1	1	232	249	10.2963
((((((......)))))	chr2:55462533-55462792(+)$1	1	23	40	11.2354
.(.(((......))).)	chr7:50444242-50444493(+)$1	1	225	242	11.1632
)).(((......)))((	chr11:47379875-47380255(-)$1	1	287	304	9.6827
((((((......)))))	chr17:76117682-76117980(-)$1	1	191	208	9.4061
((((.(......)..))	chr1:76254755-76255051(+)$1	1	128	145	9.6176
((((.(......).)))	chr4:129193414-129193639(-)$1	1	46	63	11.2628
((.(((......))).)	chr17:17942628-17942926(+)$1	1	194	211	10.8513
((.(((......)))))	chr7:889061-889332(+)$1	1	227	244	10.9061
((((((......)))))	chr12:22217960-22218225(+)$1	1	204	221	11.2354
((.(((......)))))	chr17:40717395-40717666(+)$1	1	121	138	10.9061
((((.(......)))))	chr22:24439214-24439499(+)$1	1	135	152	11.4693
.(((((......)))))	chr7:50444218-50444442(+)$1	1	146	163	10.5081
.((((((......))))	chr20:62562304-62562574(+)$1	1	67	84	8.5149
((((((......)))))	chr9:100777553-100777784(+)$1	1	19	36	11.2099
((((((......)))..	chr10:73578338-73578582(-)$1	1	191	208	10.8973
.(((((......)))))	chr16:68119686-68119986(+)$1	1	137	154	10.5081
((((((......)))))	chr1:52135157-52135415(+)$1	1	226	243	11.2099
(.((((......)))).	chr10:38344278-38344531(+)$1	1	79	96	10.1964

#PSSM
f : 0.23	g : 0.10	b : 0.10	d : 0.10	i : 0.06	c : 0.06	[ : 0.06	" : 0.04	: : 0.04	h : 0.04	= : 0.02	! : 0.02	e : 0.02	a : 0.02	$ : 0.02	
f : 0.26	e : 0.10	g : 0.10	c : 0.08	[ : 0.08	d : 0.08	i : 0.06	" : 0.04	b : 0.04	a : 0.04	h : 0.04	! : 0.02	
f : 0.26	d : 0.13	e : 0.10	g : 0.10	[ : 0.10	i : 0.06	c : 0.06	" : 0.04	h : 0.04	! : 0.02	b : 0.02	: : 0.02	
c : 0.23	f : 0.23	d : 0.13	e : 0.10	g : 0.08	i : 0.06	[ : 0.04	h : 0.04	! : 0.02	b : 0.02	
f : 0.21	c : 0.19	e : 0.10	b : 0.10	d : 0.10	[ : 0.10	i : 0.06	g : 0.06	h : 0.02	
f : 0.21	c : 0.19	e : 0.10	b : 0.10	d : 0.10	a : 0.10	i : 0.06	g : 0.06	h : 0.02	
o : 0.97	f : 0.02	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.19	f : 0.19	e : 0.10	b : 0.10	d : 0.10	a : 0.10	i : 0.06	g : 0.06	h : 0.02	o : 0.02	
f : 0.21	c : 0.19	e : 0.10	b : 0.10	d : 0.10	g : 0.08	i : 0.06	] : 0.06	h : 0.02	2 : 0.02	
f : 0.23	c : 0.21	e : 0.10	g : 0.10	d : 0.10	i : 0.06	] : 0.06	2 : 0.04	b : 0.02	h : 0.02	
f : 0.26	d : 0.19	e : 0.10	g : 0.10	] : 0.08	i : 0.06	c : 0.04	2 : 0.04	h : 0.04	b : 0.02	3 : 0.02	
f : 0.26	e : 0.10	d : 0.10	g : 0.10	] : 0.08	i : 0.06	b : 0.04	c : 0.04	2 : 0.04	a : 0.04	h : 0.04	4 : 0.02	3 : 0.02	

#score	490.92750869405415
#seq	46
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_transcript_m1_run1.txt

#BEAR
"ddddyyyyyyyyyyyyyyyydddd	chr6:64421776-64422067(+)$1	291	77	102	20.3283
ffff[avvvvvvvvvvvvva]ffff	chr11:62300363-62300632(-)$1	269	60	85	21.9557
!!acccvvvvvvvvvvvvvccc]a2	chr3:184025322-184025581(+)$1	259	138	163	22.4270
eeecccvvvvvvvvvvvvvccc::J	chr12:56994927-56995279(-)$1	352	271	296	19.0396
[cccxxxxxxxxxxxxxxxcccccc	chr11:62297711-62297967(-)$1	256	34	59	18.2765
=======uuuuuuuuuuuu======	chr21:34925573-34925798(+)$1	225	8	33	21.9264
ffffff^^^^^^^^^^^^^^^^^^^	chr8:17872035-17872306(+)$1	271	51	76	18.6242
"eeeeevvvvvvvvvvvvveeeee3	chr22:42032559-42032842(+)$1	283	175	200	21.7330
ffffffwwwwwwwwwwwwwwfffff	chr8:48740628-48740832(-)$1	204	153	178	21.5600
cc[bb^^^^^^^^^^^^^^^^^^^^	chr9:134454839-134455102(-)$1	263	172	197	18.5243
bb[cccwwwwwwwwwwwwwwccc22	chrX:153581840-153582064(-)$1	224	80	105	21.6377
cc^^^^^^^^^^^^^^^^^^^^^^c	chr16:58612504-58612732(-)$1	228	5	30	18.3244
ggggggvvvvvvvvvvvvvgggggg	chr1:39919285-39919624(+)$1	339	5	30	22.1488
=[dddd^^^^^^^^^^^^^^^^^^^	chr1:39900002-39900385(+)$1	383	29	54	18.7311
ffffffwwwwwwwwwwwwwwfffff	chr8:17863680-17863960(+)$1	280	172	197	21.5600
fffffxxxxxxxxxxxxxxxfffff	chr5:154183053-154183295(+)$1	242	188	213	18.0943
iiiiiiyyyyyyyyyyyyyyyyiii	chr17:78321477-78321742(+)$1	265	191	216	21.5445
ceeeeevvvvvvvvvvvvveeeee:	chr1:19419836-19420061(-)$1	225	140	165	20.7232
========ttttttttttt======	chr6:147634934-147635229(+)$1	295	93	118	19.5224
f!!ccc^^^^^^^^^^^^^^^^^^c	chr2:15542211-15542493(-)$1	282	122	147	19.2013
b[eeeeeuuuuuuuuuuuueeeee]	chr1:19443668-19443902(-)$1	234	65	90	20.7309
======wwwwwwwwwwwwww=====	chrX:53615269-53615491(-)$1	222	127	152	22.7399
======vvvvvvvvvvvvv======	chr7:72879714-72879963(-)$1	249	44	69	22.6519
cc[ccc^^^^^^^^^^^^^^^^^^^	chr14:102472231-102472469(+)$1	238	81	106	19.2512
[cccxxxxxxxxxxxxxxxcccfff	chr9:139369372-139369677(-)$1	305	147	172	18.1454
g!!ccc^^^^^^^^^^^^^^^^^^^	chr11:61077675-61077894(-)$1	219	84	109	19.3277
ccccccuuuuuuuuuuuuccc]ccc	chr16:2815064-2815301(+)$1	237	163	188	21.2965
ee"""ccctttttttttttccc]ee	chr11:14507847-14508116(-)$1	269	136	161	19.2117
!eeeee^^^^^^^^^^^^^^^^^^^	chrX:53575102-53575333(-)$1	231	117	142	18.8069
c:ddddyyyyyyyyyyyyyyyyddd	chr8:48733275-48733518(-)$1	243	195	220	19.5863
::ddddvvvvvvvvvvvvvdddddd	chr2:232320625-232320905(-)$1	280	138	163	18.9692
======^^^^^^^^^^^^^^^^^^^	chr2:15601786-15602015(-)$1	229	28	53	19.3237
eeee[awwwwwwwwwwwwwwa]eee	chrX:153590685-153590893(-)$1	208	169	194	21.9139
ggggggwwwwwwwwwwwwwwggggg	chr18:2707459-2707702(+)$1	243	214	239	22.2974
gggggg^^^^^^^^^^^^^^^^^^^	chr16:70588301-70588593(+)$1	292	14	39	19.1452
ffffffvvvvvvvvvvvvvffffff	chr16:58576079-58576334(-)$1	255	208	233	21.3617
:eeeeeuuuuuuuuuuuueeeeebb	chrX:153587524-153587787(-)$1	263	69	94	19.0813
eee[bbwwwwwwwwwwwwwwbbeee	chr10:71158340-71158601(+)$1	261	224	249	21.0362
gggggg^^^^^^^^^^^^^^^^^^^	chrX:123215151-123215418(+)$1	267	25	50	19.1452
:eeeeeuuuuuuuuuuuueeeee:f	chr9:432124-432425(+)$1	301	197	222	18.6024
eeeyyyyyyyyyyyyyyyyeeeeec	chr8:48800036-48800257(-)$1	221	143	168	19.6695
cc[cccxxxxxxxxxxxxxxxcccc	chr8:48766608-48766858(-)$1	250	45	70	19.1675
d[ddddvvvvvvvvvvvvvdddddd	chr1:19491387-19491591(-)$1	204	5	30	20.9253
==[a[avvvvvvvvvvvvva]a===	chr7:128485109-128485406(+)$1	297	160	185	22.7756
dddyyyyyyyyyyyyyyyyddddee	chrX:41043620-41043870(+)$1	250	153	178	19.0973
iiiiiiwwwwwwwwwwwwwwiiiii	chr8:48752549-48752796(-)$1	247	140	165	22.2392
ggggggvvvvvvvvvvvvvgggggg	chr8:17812925-17813240(+)$1	315	80	105	22.1488
iiiiiiiitttttttttttiiiiii	chr17:1564194-1564482(-)$1	288	213	238	18.6544
d[fffffftttttttttttffffff	chr21:34925598-34925831(+)$1	233	93	118	18.0535
[eeeee^^^^^^^^^^^^^^^^^^^	chr21:34924705-34924964(+)$1	259	164	189	18.8243
f[dddduuuuuuuuuuuuddddfff	chr1:19481331-19481622(-)$1	291	14	39	20.0921
ggggggvvvvvvvvvvvvvgggggg	chr8:103310975-103311233(-)$1	258	120	145	22.1488
ffddddxxxxxxxxxxxxxxxdddd	chr11:120348768-120349098(+)$1	330	30	55	17.8628
ff[ccc^^^^^^^^^^^^^^^^^^^	chr3:47718017-47718274(-)$1	257	210	235	19.1688
:gggggggtttttttttttgggggg	chr21:34924307-34924589(+)$1	282	22	47	17.7297
ffffffvvvvvvvvvvvvvffffff	chr9:35706184-35706429(-)$1	245	165	190	21.3617
gggggguuuuuuuuuuuuggggggg	chr1:19446700-19446942(-)$1	242	49	74	20.8122
[eeeeexxxxxxxxxxxxxxxeeee	chr16:58590672-58590927(-)$1	255	219	244	18.4564
dd[cccvvvvvvvvvvvvvccc]dd	chr3:184052427-184052731(+)$1	304	153	178	22.0031
cc"""ccctttttttttttccc333	chr11:62293608-62293840(-)$1	232	50	75	19.8115
fffffxxxxxxxxxxxxxxxfffff	chrX:123220315-123220571(+)$1	256	108	133	18.0943
f!!cccyyyyyyyyyyyyyyyyccc	chr8:48800981-48801194(-)$1	213	134	159	21.7173
cc"""ccctttttttttttccc444	chr11:62292334-62292624(-)$1	290	125	150	19.7982
ccc!!ccctttttttttttccc333	chr15:28437006-28437356(-)$1	350	269	294	19.9194
#gggggggtttttttttttgggggg	chr1:39896277-39896608(+)$1	331	86	111	18.6789
ccc[ddddtttttttttttddddcc	chr1:117910660-117911141(+)$1	481	405	430	18.1959
###ccc^^^^^^^^^^^^^^^^^^^	chr5:154172216-154172456(+)$1	240	24	49	18.9927
ff!!bbvvvvvvvvvvvvvbb22ff	chrX:41055499-41055712(+)$1	213	85	110	21.0897
ddd!!bbuuuuuuuuuuuubb22dd	chr11:62291052-62291305(-)$1	253	52	77	19.9125
!!fffffftttttttttttffffff	chr17:78337392-78337653(+)$1	261	195	220	18.2636
!bb!!bbuuuuuuuuuuuubb22bb	chr21:38538014-38538355(+)$1	341	255	280	19.6435
ddddddvvvvvvvvvvvvvdddd55	chr3:184052546-184052803(+)$1	257	112	137	19.6591
b[cccwwwwwwwwwwwwwwcccbbG	chr5:31493225-31493501(-)$1	276	206	231	20.8536
gggggg^^^^^^^^^^^^^^^^^^g	chr17:57750920-57751134(+)$1	214	61	86	19.0797

#otherMatches

#Seq PSSM
UGGAAUUAGCAAAUAAACCUCUUCC	chr6:64421776-64422067(+)$1	291	77	102	20.3283
CUCUGUAUCAGGUGCAAAGGGAGAG	chr11:62300363-62300632(-)$1	269	60	85	21.9557
GACCCAAACAACCUCUUCAUGGUGC	chr3:184025322-184025581(+)$1	259	138	163	22.4270
AACAGCGUUACCUAACCCAGCUGAC	chr12:56994927-56995279(-)$1	352	271	296	19.0396
AGGCCCCCAAGAUCUCCAUGCCUGA	chr11:62297711-62297967(-)$1	256	34	59	18.2765
AUGGCUGCCCCAGAGUCUUCAGCUA	chr21:34925573-34925798(+)$1	225	8	33	21.9264
UGACAGAUGACCAAAAUAACUGUCC	chr8:17872035-17872306(+)$1	271	51	76	18.6242
AGCCGGGCCAGGACCAAAGCCGGUG	chr22:42032559-42032842(+)$1	283	175	200	21.7330
ACAUGGCCUUUCCAUCAUCACUAUG	chr8:48740628-48740832(-)$1	204	153	178	21.5600
CCAGGAACAUAACAAGGAGAAAAAC	chr9:134454839-134455102(-)$1	263	172	197	18.5243
GCAUUCUAGUCAAGUACAAUGAACA	chrX:153581840-153582064(-)$1	224	80	105	21.6377
CCUUACUACAAAUUAACACCUCUUG	chr16:58612504-58612732(-)$1	228	5	30	18.3244
CAUUGAAAUUUAUCCCCCCUCAGUG	chr1:39919285-39919624(+)$1	339	5	30	22.1488
AAGAGUUUAUAAUAGUAAUACUUAU	chr1:39900002-39900385(+)$1	383	29	54	18.7311
GAGAGCAAAGAGUUUGUAAAGUUCU	chr8:17863680-17863960(+)$1	280	172	197	21.5600
AGACUCAAGCCAGACAUCACGGUUU	chr5:154183053-154183295(+)$1	242	188	213	18.0943
GGUGCUGGAGAAAUGGCAGAAGAGC	chr17:78321477-78321742(+)$1	265	191	216	21.5445
CUGCUGGCAUCAAGAACAACAGCAA	chr1:19419836-19420061(-)$1	225	140	165	20.7232
UAUUUGAAAAUCCCUACCCUUUGAG	chr6:147634934-147635229(+)$1	295	93	118	19.5224
UGCAUCUAUACCUGUGAACGAAAUG	chr2:15542211-15542493(-)$1	282	122	147	19.2013
CAGUCACACCAUCAGCAAAGUGACA	chr1:19443668-19443902(-)$1	234	65	90	20.7309
UGCUUUUAACGCUACUUUUUGAGGU	chrX:53615269-53615491(-)$1	222	127	152	22.7399
UUUGAAUUUUUUUUUUUUUUUCAGA	chr7:72879714-72879963(-)$1	249	44	69	22.6519
AGAUGCGAUUUUACUUUGACCCUAA	chr14:102472231-102472469(+)$1	238	81	106	19.2512
UGUGUCCUUAUCGAACUCUCAUGAG	chr9:139369372-139369677(-)$1	305	147	172	18.1454
GGAGGUGCACAACCUACUUAUCAUU	chr11:61077675-61077894(-)$1	219	84	109	19.3277
GCCAAGACAAGAACCCCACUUCGGC	chr16:2815064-2815301(+)$1	237	163	188	21.2965
GCCCUGCUGUAAAAUAUGAAGCUGC	chr11:14507847-14508116(-)$1	269	136	161	19.2117
ACACAGCAGCGGACCAAAGAAACAA	chrX:53575102-53575333(-)$1	231	117	142	18.8069
GAGCCAAAUAUUACAUUCAAAAUGG	chr8:48733275-48733518(-)$1	243	195	220	19.5863
GUUCGGGCAAGGAUAGUUACUGACC	chr2:232320625-232320905(-)$1	280	138	163	18.9692
UUUUAAUAUUUUCUUGUCACCCAUA	chr2:15601786-15602015(-)$1	229	28	53	19.3237
GCCUUCUCCUCCCACUGCCUGCAGG	chrX:153590685-153590893(-)$1	208	169	194	21.9139
AGUGUGCUUUUCUUUUGUCUUACAU	chr18:2707459-2707702(+)$1	243	214	239	22.2974
UUAUCUAACCAACUCCCUUCUUUUC	chr16:70588301-70588593(+)$1	292	14	39	19.1452
UGGGGCUCUGUCUUUCCCCGUCCCA	chr16:58576079-58576334(-)$1	255	208	233	21.3617
UGUCCUGCAUGGAUAACAAGGACGG	chrX:153587524-153587787(-)$1	263	69	94	19.0813
CUCUACAAGCUUCAUCCACAGUGAG	chr10:71158340-71158601(+)$1	261	224	249	21.0362
UGUUAAUCUCCAGGUAUUAAGAACU	chrX:123215151-123215418(+)$1	267	25	50	19.1452
CAGGUACACCGAAGCACAUACCUUG	chr9:432124-432425(+)$1	301	197	222	18.6024
AGGACUGGUAGGAAAAACGCCUCUG	chr8:48800036-48800257(-)$1	221	143	168	19.6695
CAACAGUCUCAAUUUUCUCCUUUGU	chr8:48766608-48766858(-)$1	250	45	70	19.1675
AAGCCAUUUCCCCUUUUCCUGGCUC	chr1:19491387-19491591(-)$1	204	5	30	20.9253
AGUGGCGUCAAGGUCUCAGGGCCUG	chr7:128485109-128485406(+)$1	297	160	185	22.7756
UCCUACCGAAUGCAGAUAUGGAAAC	chrX:41043620-41043870(+)$1	250	153	178	19.0973
GUGGAAUUCGUUUCCCAUCCUUCUA	chr8:48752549-48752796(-)$1	247	140	165	22.2392
GAAGUACUUCAGCUCCCUCUGCUUC	chr8:17812925-17813240(+)$1	315	80	105	22.1488
UUAGAGGGACCUGUCACAACCCUUU	chr17:1564194-1564482(-)$1	288	213	238	18.6544
GCCUUCGGUUGUGACUGUCCCGGAG	chr21:34925598-34925831(+)$1	233	93	118	18.0535
CCGAUCUAUGAUGUCAUCUUAUACU	chr21:34924705-34924964(+)$1	259	164	189	18.8243
AACAUGAAUUACUGCAAAUAUGUGU	chr1:19481331-19481622(-)$1	291	14	39	20.0921
GUUCUCCAGCCCUAUCUACGAGAAC	chr8:103310975-103311233(-)$1	258	120	145	22.1488
AUGCUUCAUGUUAAAAGUUAAAAGC	chr11:120348768-120349098(+)$1	330	30	55	17.8628
AGCAUAUCUAUUUAGAAACAAUUAU	chr3:47718017-47718274(-)$1	257	210	235	19.1688
CCAUGACCCCUAUAGAUUAGGUCAU	chr21:34924307-34924589(+)$1	282	22	47	17.7297
CAGACUAAAACAUUGGCAGAGUCUG	chr9:35706184-35706429(-)$1	245	165	190	21.3617
UGGAGGACUUCUUCCUACUCUUCAG	chr1:19446700-19446942(-)$1	242	49	74	20.8122
AAAAUGUUUAGUUGUAUGUCUCAUU	chr16:58590672-58590927(-)$1	255	219	244	18.4564
GUUGGGAGAGUAGCAAGGACCCCGC	chr3:184052427-184052731(+)$1	304	153	178	22.0031
UGAAUAUCAAAGCCCCCAAGAUCUC	chr11:62293608-62293840(-)$1	232	50	75	19.8115
CUUUCAGAUGUCACUCCGAAGAGAG	chrX:123220315-123220571(+)$1	256	108	133	18.0943
UUUUACAUUUAUUUUAGCUUUAGUA	chr8:48800981-48801194(-)$1	213	134	159	21.7173
CAAAGUGGAUAUUAAUGCCCCAGAU	chr11:62292334-62292624(-)$1	290	125	150	19.7982
AGCAGCGGGCACUUUCACACCGAUG	chr15:28437006-28437356(-)$1	350	269	294	19.9194
CCCUCCUUAGGAAUUAAAGAAGGAG	chr1:39896277-39896608(+)$1	331	86	111	18.6789
CGGAGUCUUCCUGAUCCAUGGACCC	chr1:117910660-117911141(+)$1	481	405	430	18.1959
ACAGGAGAAAGGAGAAGGGAGUGAU	chr5:154172216-154172456(+)$1	240	24	49	18.9927
CAUUACUCUACUCUUUACUGUUUUG	chrX:41055499-41055712(+)$1	213	85	110	21.0897
CCUGACAUUGACUUAAACUUGAAAG	chr11:62291052-62291305(-)$1	253	52	77	19.9125
CAGGUGAGACCCAGGAGCCCUCACC	chr17:78337392-78337653(+)$1	261	195	220	18.2636
GUGAAGGCCAAACCAGUAUCCGACA	chr21:38538014-38538355(+)$1	341	255	280	19.6435
GGCUCCGUGAAGCAGAGGAGGAGUC	chr3:184052546-184052803(+)$1	257	112	137	19.6591
GCUGCUUUUCUCUUUCCUUGUACCU	chr5:31493225-31493501(-)$1	276	206	231	20.8536
UUUCCUUUUGUUUGUCUUUUUUUCA	chr17:57750920-57751134(+)$1	214	61	86	19.0797

#DB
.((((................))))	chr6:64421776-64422067(+)$1	1	77	102	20.3283
((((.(.............).))))	chr11:62300363-62300632(-)$1	1	60	85	21.9557
..((((.............))).).	chr3:184025322-184025581(+)$1	1	138	163	22.4270
)))(((.............)))..)	chr12:56994927-56995279(-)$1	1	271	296	19.0396
.(((...............))))))	chr11:62297711-62297967(-)$1	1	34	59	18.2765
(((((((............))))))	chr21:34925573-34925798(+)$1	1	8	33	21.9264
((((((...................	chr8:17872035-17872306(+)$1	1	51	76	18.6242
.(((((.............))))).	chr22:42032559-42032842(+)$1	1	175	200	21.7330
((((((..............)))))	chr8:48740628-48740832(-)$1	1	153	178	21.5600
((.((....................	chr9:134454839-134455102(-)$1	1	172	197	18.5243
((.(((..............)))..	chrX:153581840-153582064(-)$1	1	80	105	21.6377
((......................)	chr16:58612504-58612732(-)$1	1	5	30	18.3244
((((((.............))))))	chr1:39919285-39919624(+)$1	1	5	30	22.1488
(.((((...................	chr1:39900002-39900385(+)$1	1	29	54	18.7311
((((((..............)))))	chr8:17863680-17863960(+)$1	1	172	197	21.5600
(((((...............)))))	chr5:154183053-154183295(+)$1	1	188	213	18.0943
((((((................)))	chr17:78321477-78321742(+)$1	1	191	216	21.5445
)(((((.............))))).	chr1:19419836-19420061(-)$1	1	140	165	20.7232
((((((((...........))))))	chr6:147634934-147635229(+)$1	1	93	118	19.5224
(..(((..................)	chr2:15542211-15542493(-)$1	1	122	147	19.2013
(.(((((............))))).	chr1:19443668-19443902(-)$1	1	65	90	20.7309
((((((..............)))))	chrX:53615269-53615491(-)$1	1	127	152	22.7399
((((((.............))))))	chr7:72879714-72879963(-)$1	1	44	69	22.6519
((.(((...................	chr14:102472231-102472469(+)$1	1	81	106	19.2512
.(((...............))))))	chr9:139369372-139369677(-)$1	1	147	172	18.1454
(..(((...................	chr11:61077675-61077894(-)$1	1	84	109	19.3277
((((((............))).)))	chr16:2815064-2815301(+)$1	1	163	188	21.2965
((...(((...........))).))	chr11:14507847-14508116(-)$1	1	136	161	19.2117
.(((((...................	chrX:53575102-53575333(-)$1	1	117	142	18.8069
).((((................)))	chr8:48733275-48733518(-)$1	1	195	220	19.5863
..((((.............))))((	chr2:232320625-232320905(-)$1	1	138	163	18.9692
((((((...................	chr2:15601786-15602015(-)$1	1	28	53	19.3237
((((.(..............).)))	chrX:153590685-153590893(-)$1	1	169	194	21.9139
((((((..............)))))	chr18:2707459-2707702(+)$1	1	214	239	22.2974
((((((...................	chr16:70588301-70588593(+)$1	1	14	39	19.1452
((((((.............))))))	chr16:58576079-58576334(-)$1	1	208	233	21.3617
.(((((............)))))((	chrX:153587524-153587787(-)$1	1	69	94	19.0813
(((.((..............)))))	chr10:71158340-71158601(+)$1	1	224	249	21.0362
((((((...................	chrX:123215151-123215418(+)$1	1	25	50	19.1452
.(((((............))))).(	chr9:432124-432425(+)$1	1	197	222	18.6024
(((................))))))	chr8:48800036-48800257(-)$1	1	143	168	19.6695
((.(((...............))))	chr8:48766608-48766858(-)$1	1	45	70	19.1675
(.((((.............))))))	chr1:19491387-19491591(-)$1	1	5	30	20.9253
((.(.(.............).))))	chr7:128485109-128485406(+)$1	1	160	185	22.7756
(((................))))))	chrX:41043620-41043870(+)$1	1	153	178	19.0973
((((((..............)))))	chr8:48752549-48752796(-)$1	1	140	165	22.2392
((((((.............))))))	chr8:17812925-17813240(+)$1	1	80	105	22.1488
((((((((...........))))))	chr17:1564194-1564482(-)$1	1	213	238	18.6544
(.((((((...........))))))	chr21:34925598-34925831(+)$1	1	93	118	18.0535
.(((((...................	chr21:34924705-34924964(+)$1	1	164	189	18.8243
(.((((............)))))))	chr1:19481331-19481622(-)$1	1	14	39	20.0921
((((((.............))))))	chr8:103310975-103311233(-)$1	1	120	145	22.1488
((((((...............))))	chr11:120348768-120349098(+)$1	1	30	55	17.8628
((.(((...................	chr3:47718017-47718274(-)$1	1	210	235	19.1688
.(((((((...........))))))	chr21:34924307-34924589(+)$1	1	22	47	17.7297
((((((.............))))))	chr9:35706184-35706429(-)$1	1	165	190	21.3617
((((((............)))))))	chr1:19446700-19446942(-)$1	1	49	74	20.8122
.(((((...............))))	chr16:58590672-58590927(-)$1	1	219	244	18.4564
((.(((.............))).))	chr3:184052427-184052731(+)$1	1	153	178	22.0031
((...(((...........)))...	chr11:62293608-62293840(-)$1	1	50	75	19.8115
(((((...............)))))	chrX:123220315-123220571(+)$1	1	108	133	18.0943
(..(((................)))	chr8:48800981-48801194(-)$1	1	134	159	21.7173
((...(((...........)))...	chr11:62292334-62292624(-)$1	1	125	150	19.7982
(((..(((...........)))...	chr15:28437006-28437356(-)$1	1	269	294	19.9194
.(((((((...........))))))	chr1:39896277-39896608(+)$1	1	86	111	18.6789
(((.((((...........))))))	chr1:117910660-117911141(+)$1	1	405	430	18.1959
...(((...................	chr5:154172216-154172456(+)$1	1	24	49	18.9927
((..((.............))..))	chrX:41055499-41055712(+)$1	1	85	110	21.0897
(((..((............))..))	chr11:62291052-62291305(-)$1	1	52	77	19.9125
..((((((...........))))))	chr17:78337392-78337653(+)$1	1	195	220	18.2636
.((..((............))..))	chr21:38538014-38538355(+)$1	1	255	280	19.6435
((((((.............))))..	chr3:184052546-184052803(+)$1	1	112	137	19.6591
(.(((..............))))))	chr5:31493225-31493501(-)$1	1	206	231	20.8536
((((((..................)	chr17:57750920-57751134(+)$1	1	61	86	19.0797

#PSSM
f : 0.18	c : 0.14	g : 0.12	= : 0.09	d : 0.08	e : 0.06	! : 0.05	[ : 0.05	: : 0.05	b : 0.04	i : 0.04	" : 0.02	# : 0.02	
e : 0.16	f : 0.14	c : 0.14	g : 0.13	= : 0.08	[ : 0.08	d : 0.06	! : 0.06	i : 0.04	b : 0.02	: : 0.02	# : 0.01	
e : 0.16	d : 0.13	f : 0.13	g : 0.13	[ : 0.09	c : 0.08	= : 0.06	! : 0.05	i : 0.04	" : 0.04	a : 0.01	^ : 0.01	# : 0.01	b : 0.01	
c : 0.20	f : 0.13	g : 0.13	e : 0.12	d : 0.10	= : 0.06	! : 0.05	i : 0.04	" : 0.04	[ : 0.02	y : 0.02	b : 0.01	^ : 0.01	a : 0.01	
c : 0.17	g : 0.13	d : 0.12	f : 0.12	e : 0.10	= : 0.06	[ : 0.04	b : 0.04	i : 0.04	" : 0.04	! : 0.04	x : 0.02	y : 0.02	^ : 0.01	
c : 0.21	g : 0.13	e : 0.10	d : 0.10	f : 0.09	= : 0.06	x : 0.05	b : 0.05	y : 0.04	a : 0.04	i : 0.04	^ : 0.02	w : 0.01	
v : 0.22	^ : 0.20	w : 0.12	x : 0.09	y : 0.08	u : 0.06	c : 0.05	= : 0.02	f : 0.02	g : 0.02	b : 0.02	e : 0.01	i : 0.01	d : 0.01	
v : 0.22	^ : 0.20	u : 0.12	w : 0.12	x : 0.09	y : 0.08	c : 0.05	f : 0.02	g : 0.02	= : 0.01	i : 0.01	d : 0.01	
v : 0.22	^ : 0.20	t : 0.14	u : 0.12	w : 0.12	x : 0.09	y : 0.08	
v : 0.22	^ : 0.20	t : 0.14	u : 0.12	w : 0.12	x : 0.09	y : 0.08	
v : 0.22	^ : 0.20	t : 0.14	u : 0.12	w : 0.12	x : 0.09	y : 0.08	
v : 0.22	^ : 0.20	t : 0.14	u : 0.12	w : 0.12	x : 0.09	y : 0.08	
v : 0.22	^ : 0.20	t : 0.14	u : 0.12	w : 0.12	x : 0.09	y : 0.08	
v : 0.22	^ : 0.20	t : 0.14	u : 0.12	w : 0.12	x : 0.09	y : 0.08	
v : 0.22	^ : 0.20	t : 0.14	u : 0.12	w : 0.12	x : 0.09	y : 0.08	
v : 0.22	^ : 0.20	t : 0.14	u : 0.12	w : 0.12	x : 0.09	y : 0.08	
v : 0.22	^ : 0.20	t : 0.14	u : 0.12	w : 0.12	x : 0.09	y : 0.08	
v : 0.22	^ : 0.20	t : 0.14	u : 0.12	w : 0.12	x : 0.09	y : 0.08	
v : 0.22	^ : 0.20	t : 0.14	w : 0.12	x : 0.09	y : 0.08	u : 0.05	e : 0.02	c : 0.01	d : 0.01	g : 0.01	
^ : 0.20	c : 0.14	w : 0.10	e : 0.08	g : 0.08	d : 0.08	x : 0.06	y : 0.05	f : 0.05	= : 0.04	b : 0.04	a : 0.02	i : 0.01	
^ : 0.20	c : 0.16	f : 0.10	g : 0.09	e : 0.08	d : 0.08	y : 0.05	= : 0.05	b : 0.05	x : 0.04	] : 0.02	i : 0.02	a : 0.01	
^ : 0.20	c : 0.16	f : 0.12	d : 0.10	e : 0.09	g : 0.09	= : 0.05	y : 0.04	2 : 0.04	] : 0.02	i : 0.02	b : 0.01	a : 0.01	
^ : 0.20	f : 0.14	e : 0.12	d : 0.10	g : 0.09	c : 0.06	= : 0.06	] : 0.04	i : 0.04	2 : 0.04	3 : 0.02	: : 0.01	4 : 0.01	b : 0.01	
^ : 0.20	f : 0.16	e : 0.12	d : 0.09	g : 0.09	c : 0.06	= : 0.06	i : 0.04	b : 0.04	: : 0.02	3 : 0.02	a : 0.01	2 : 0.01	4 : 0.01	5 : 0.01	
f : 0.17	^ : 0.16	c : 0.10	g : 0.10	d : 0.09	= : 0.06	e : 0.06	3 : 0.04	i : 0.04	2 : 0.02	b : 0.02	J : 0.01	: : 0.01	] : 0.01	4 : 0.01	5 : 0.01	G : 0.01	

#score	1483.412354991795
#seq	74
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF021VWK_U2AF1_transcript_m3_run1.txt

#BEAR
eeeeeqqqqqqqqeeeee	chr6:170063452-170063683(-)$1	231	139	157	13.9508
eeeeeqqqqqqqqeeeee	chr11:65272208-65272417(+)$1	209	168	186	13.9508
gggggqqqqqqqqggggg	chr2:37111084-37111355(-)$1	271	19	37	14.6503
fffffqqqqqqqqfffff	chr11:65201525-65201746(+)$1	221	19	37	14.3233
fffffqqqqqqqqfffff	chr10:103571738-103571949(-)$1	211	142	160	14.3233
d!!bbqqqqqqqqbb]dd	chr11:65202053-65202289(+)$1	236	129	147	13.2798
=====qqqqqqqq=====	chr13:31726917-31727180(-)$1	263	127	145	14.5379
d[cccqqqqqqqqcccdd	chr6:32943918-32944191(+)$1	273	178	196	14.2308
cc[bbqqqqqqqqbbccc	chr11:70255824-70256090(+)$1	266	108	126	13.5458
eeeeeqqqqqqqqeeeee	chr9:140672217-140672473(+)$1	256	230	248	13.9508
fffffqqqqqqqqfffff	chr5:134126075-134126293(+)$1	218	188	206	14.3233
gggggqqqqqqqqggggg	chr17:38189567-38189828(-)$1	261	144	162	14.6503
eeeeeqqqqqqqqeeeee	chr5:38886195-38886522(+)$1	327	111	129	13.9508
f!!bbqqqqqqqqbbfff	chr8:42177005-42177280(+)$1	275	21	39	13.7466
cc[bbqqqqqqqqbbccc	chr6:11229859-11230090(-)$1	231	125	143	13.5458
!!cccqqqqqqqqccc33	chr17:3727247-3727502(-)$1	255	108	126	14.6898
[ddddqqqqqqqqdddd]	chr10:101372206-101372467(-)$1	261	162	180	13.0217
bbcccqqqqqqqqccc]b	chr2:174228617-174228883(+)$1	266	160	178	13.6632
gggggqqqqqqqqggggg	chr17:53374119-53374341(+)$1	222	74	92	14.6503
c[cccqqqqqqqqccc33	chr19:9529705-9529957(-)$1	252	183	201	14.6747
eee[aqqqqqqqqa]eee	chr13:97995159-97995435(+)$1	276	77	95	14.0365
fffffqqqqqqqqfffff	chr14:32548104-32548395(+)$1	291	15	33	14.3233
eeeeeqqqqqqqqeeeee	chr2:201778023-201778253(-)$1	230	92	110	13.9508
fffffqqqqqqqqfffff	chr10:103571702-103571938(-)$1	236	131	149	14.3233
fffffqqqqqqqqfffff	chr2:131126362-131126641(+)$1	279	19	37	14.3233
ffcccqqqqqqqqccc]f	chr13:47286538-47286808(+)$1	270	52	70	14.6058
[ddddqqqqqqqqddddd	chr2:216211744-216212045(+)$1	301	197	215	12.9233
##cccqqqqqqqqccc55	chr6:31499087-31499304(-)$1	217	32	50	12.5503
d!!bbqqqqqqqqbb]dd	chr11:65202089-65202298(+)$1	209	93	111	13.2798
!!cccqqqqqqqqcccdd	chrX:30715715-30715994(+)$1	279	171	189	14.3646
iiiiiqqqqqqqqiiiii	chr14:24641518-24641766(+)$1	248	130	148	14.2988
ffffaqqqqqqqqa]fff	chr16:29930816-29931066(-)$1	250	190	208	14.2116
""cccqqqqqqqqccc33	chr2:70455958-70456181(-)$1	223	31	49	14.4994
bbcccqqqqqqqqccc]b	chr6:41751748-41752008(+)$1	260	142	160	13.6632
cccccqqqqqqqqccc22	chr11:70185171-70185460(+)$1	289	192	210	14.0577
gggggqqqqqqqqggggg	chr17:8135262-8135469(-)$1	207	145	163	14.6503
gggggqqqqqqqqggggg	chrX:128615017-128615260(-)$1	243	213	231	14.6503
ddd[aqqqqqqqqa]ddd	chr2:42489496-42489705(+)$1	209	173	191	13.2755
gggggqqqqqqqqggggg	chr2:136742306-136742572(-)$1	266	218	236	14.6503
gggggqqqqqqqqggggg	chr21:18940361-18940597(+)$1	236	22	40	14.6503
=====qqqqqqqq=====	chr11:47256592-47256865(+)$1	273	115	133	14.5379
ggg[aqqqqqqqqa]ggg	chr1:155884000-155884256(-)$1	256	123	141	14.4113
""cccqqqqqqqqccc]b	chr3:9516639-9516888(+)$1	249	133	151	14.2211
eeeeeqqqqqqqqeeeee	chr22:29192253-29192496(-)$1	243	31	49	13.9508
gggggqqqqqqqqggggg	chr1:109855965-109856189(-)$1	224	194	212	14.6503
!ddddqqqqqqqqdddd]	chr3:194174673-194174927(-)$1	254	13	31	13.0046
fffffqqqqqqqqfffff	chrX:73494137-73494358(-)$1	221	196	214	14.3233
fffffqqqqqqqqfffff	chr2:69583579-69583802(-)$1	223	126	144	14.3233
cc[bbqqqqqqqqbb]cc	chr11:65190341-65190562(+)$1	221	5	23	13.4655
""cccqqqqqqqqccc22	chr16:89590294-89590543(+)$1	249	99	117	14.0456
d[cccqqqqqqqqccc]d	chr11:65202426-65202675(+)$1	249	207	225	14.4646
eeeeeqqqqqqqqeeeee	chr6:144808580-144808817(+)$1	237	117	135	13.9508
cccccqqqqqqqqccc]c	chr10:105420734-105421001(-)$1	267	20	38	14.5076
eeeeeqqqqqqqqeeeee	chr16:2818326-2818551(+)$1	225	113	131	13.9508
eeeeeqqqqqqqqeeeee	chr12:71960696-71960951(+)$1	255	19	37	13.9508
gggggqqqqqqqqggggg	chr6:159030257-159030503(+)$1	246	19	37	14.6503
eeeeeqqqqqqqqeeeee	chr7:138203280-138203575(+)$1	295	216	234	13.9508
fffffqqqqqqqqfffff	chr19:19102380-19102712(-)$1	332	111	129	14.3233
fffffqqqqqqqqfffff	chr12:57909819-57910049(+)$1	230	194	212	14.3233
eeeeeqqqqqqqqeeeee	chr16:75033359-75033588(+)$1	229	95	113	13.9508
cc[bbqqqqqqqqbb]cc	chr17:34161457-34161707(+)$1	250	55	73	13.4655
gggggqqqqqqqqggggg	chr14:35482901-35483162(+)$1	261	222	240	14.6503
eeeeeqqqqqqqqeeeee	chr2:219557192-219557450(+)$1	258	86	104	13.9508
fffffqqqqqqqqfffff	chr16:4927276-4927545(+)$1	269	117	135	14.3233
fffffqqqqqqqqfffff	chr9:32985881-32986135(-)$1	254	183	201	14.3233
d!!bbqqqqqqqqbb22d	chr14:95660661-95660953(-)$1	292	49	67	12.9690
gggggqqqqqqqqggggg	chr6:16761309-16761584(-)$1	275	43	61	14.6503
c[cccqqqqqqqqccc33	chr21:45928312-45928569(+)$1	257	38	56	14.6747
ccc[aqqqqqqqqa]ccc	chr6:109590831-109591075(+)$1	244	2	20	14.0753
d[cccqqqqqqqqccc]d	chr19:54971693-54971956(+)$1	263	20	38	14.4646

#otherMatches

#Seq PSSM
GUUUCAUAUUACAGAAAU	chr6:170063452-170063683(-)$1	231	139	157	13.9508
ACAUUCCAUUUUAAAUGU	chr11:65272208-65272417(+)$1	209	168	186	13.9508
UAUUUUUAAAGGUAAAUA	chr2:37111084-37111355(-)$1	271	19	37	14.6503
guaagauucagcccuugc	chr11:65201525-65201746(+)$1	221	19	37	14.3233
UUCUUGAAUUACAAAGAA	chr10:103571738-103571949(-)$1	211	142	160	14.3233
uccgacauuuuucuccau	chr11:65202053-65202289(+)$1	236	129	147	13.2798
UGUGUUAGAUGCUGCACA	chr13:31726917-31727180(-)$1	263	127	145	14.5379
UACUCCUCCACCUGAGAU	chr6:32943918-32944191(+)$1	273	178	196	14.2308
CAAGCAUACACAAGCUGA	chr11:70255824-70256090(+)$1	266	108	126	13.5458
UUCCCAGGGACCAGGGAA	chr9:140672217-140672473(+)$1	256	230	248	13.9508
UGUUUUGAAAUGUAAAUA	chr5:134126075-134126293(+)$1	218	188	206	14.3233
UCUCUUGAAACUUGGAGA	chr17:38189567-38189828(-)$1	261	144	162	14.6503
GUCACAGCCCACCGUGGC	chr5:38886195-38886522(+)$1	327	111	129	13.9508
GUUGCUUAUUUCUGUUUC	chr8:42177005-42177280(+)$1	275	21	39	13.7466
GUCACUGUCAUACGUACU	chr6:11229859-11230090(-)$1	231	125	143	13.5458
ccgcccagccccaggucu	chr17:3727247-3727502(-)$1	255	108	126	14.6898
CGGAAGGUAAUGAUUCCU	chr10:101372206-101372467(-)$1	261	162	180	13.0217
CUCCUUGAAUCCUGGGCA	chr2:174228617-174228883(+)$1	266	160	178	13.6632
aaaaauuuuuuuuuuuuu	chr17:53374119-53374341(+)$1	222	74	92	14.6503
ACUGAGUCCCUAGUCGAA	chr19:9529705-9529957(-)$1	252	183	201	14.6747
AACUCUUUCUCCUGUGUU	chr13:97995159-97995435(+)$1	276	77	95	14.0365
UCUAGGUAACCUACUAGA	chr14:32548104-32548395(+)$1	291	15	33	14.3233
GUUCAUAUCCUUUUGAAC	chr2:201778023-201778253(-)$1	230	92	110	13.9508
UUCUUGAAUUACAAAGAA	chr10:103571702-103571938(-)$1	236	131	149	14.3233
uggucuguucagugacca	chr2:131126362-131126641(+)$1	279	19	37	14.3233
AAAACCAUACAUAGUUCU	chr13:47286538-47286808(+)$1	270	52	70	14.6058
GAUUAUAAGCUUUUGAUG	chr2:216211744-216212045(+)$1	301	197	215	12.9233
CUAGAAACUCCCCUCUCC	chr6:31499087-31499304(-)$1	217	32	50	12.5503
uccgacauuuuucuccau	chr11:65202089-65202298(+)$1	209	93	111	13.2798
UUAUGUACCCAUUCAUUU	chrX:30715715-30715994(+)$1	279	171	189	14.3646
AAGUCCAAAUCCUGACUU	chr14:24641518-24641766(+)$1	248	130	148	14.2988
agaucuucacguugcauc	chr16:29930816-29931066(-)$1	250	190	208	14.2116
AGGGUAUUCACUAACCAC	chr2:70455958-70456181(-)$1	223	31	49	14.4994
GUUCCCUUUGCCUGGACA	chr6:41751748-41752008(+)$1	260	142	160	13.6632
GCGCCCACAGAAAGGCCG	chr11:70185171-70185460(+)$1	289	192	210	14.0577
UCAGUUUCUAUGUGUUGG	chr17:8135262-8135469(-)$1	207	145	163	14.6503
AACUGUACAAGGCCAGUU	chrX:128615017-128615260(-)$1	243	213	231	14.6503
UUGGAUAUACUGUUGCAA	chr2:42489496-42489705(+)$1	209	173	191	13.2755
UCAGAAAUCAAAGUUUGA	chr2:136742306-136742572(-)$1	266	218	236	14.6503
UAGUUGAACAAAAAAUUA	chr21:18940361-18940597(+)$1	236	22	40	14.6503
CUCCUGUCUAGAGAGGAG	chr11:47256592-47256865(+)$1	273	115	133	14.5379
GGUUGUUUUUUCUCUAUU	chr1:155884000-155884256(-)$1	256	123	141	14.4113
CAGAGACAUUAAGCUCAG	chr3:9516639-9516888(+)$1	249	133	151	14.2211
CUUUUAAGUCCUCAAGAG	chr22:29192253-29192496(-)$1	243	31	49	13.9508
GUGCUUCCCACACAGUAC	chr1:109855965-109856189(-)$1	224	194	212	14.6503
guacucagcacaaaguaa	chr3:194174673-194174927(-)$1	254	13	31	13.0046
AAUAUGAAAGUAAAUAUU	chrX:73494137-73494358(-)$1	221	196	214	14.3233
CACUUGUGUUUAAAAGUG	chr2:69583579-69583802(-)$1	223	126	144	14.3233
AGACAGGGAGAGAUGACU	chr11:65190341-65190562(+)$1	221	5	23	13.4655
UUGCUUCUCUGCCGGCUC	chr16:89590294-89590543(+)$1	249	99	117	14.0456
GUUAUUAUAUUAUGUGCU	chr11:65202426-65202675(+)$1	249	207	225	14.4646
UCUGCGCCACCCGGCAGA	chr6:144808580-144808817(+)$1	237	117	135	13.9508
GCGCUGGCGACAGAGCAG	chr10:105420734-105421001(-)$1	267	20	38	14.5076
GGGACAGAUAAaagucuc	chr16:2818326-2818551(+)$1	225	113	131	13.9508
GUUGUGUAAACAGGCAAC	chr12:71960696-71960951(+)$1	255	19	37	13.9508
uaucugcggucuuggaua	chr6:159030257-159030503(+)$1	246	19	37	14.6503
cagcuuccugaauagcug	chr7:138203280-138203575(+)$1	295	216	234	13.9508
GGGGGUUCAUCUUCUCCU	chr19:19102380-19102712(-)$1	332	111	129	14.3233
UUGUUGUUCUCCAGGCAA	chr12:57909819-57910049(+)$1	230	194	212	14.3233
GGGUCUCCUUUUUGACUC	chr16:75033359-75033588(+)$1	229	95	113	13.9508
UUAAUGAUUUUAAAUAAA	chr17:34161457-34161707(+)$1	250	55	73	13.4655
GGGAUAUAGAAAAAUCUC	chr14:35482901-35483162(+)$1	261	222	240	14.6503
GGAGUUACUCUUUGCUUU	chr2:219557192-219557450(+)$1	258	86	104	13.9508
GCUGGCUUGCACUCCAGC	chr16:4927276-4927545(+)$1	269	117	135	14.3233
GGAAUUUCAGUACAUUUC	chr9:32985881-32986135(-)$1	254	183	201	14.3233
UUCGACGACAUACUCAUA	chr14:95660661-95660953(-)$1	292	49	67	12.9690
UUUACACUUUACAGUAAG	chr6:16761309-16761584(-)$1	275	43	61	14.6503
AAGCUUGACCCAUGGCCC	chr21:45928312-45928569(+)$1	257	38	56	14.6747
GGAGCUUUUAUCUGGUCU	chr6:109590831-109591075(+)$1	244	2	20	14.0753
CCCGCACAGGUAAGUGAG	chr19:54971693-54971956(+)$1	263	20	38	14.4646

#DB
(((((........)))))	chr6:170063452-170063683(-)$1	1	139	157	13.9508
(((((........)))))	chr11:65272208-65272417(+)$1	1	168	186	13.9508
(((((........)))))	chr2:37111084-37111355(-)$1	1	19	37	14.6503
(((((........)))))	chr11:65201525-65201746(+)$1	1	19	37	14.3233
(((((........)))))	chr10:103571738-103571949(-)$1	1	142	160	14.3233
(..((........)).))	chr11:65202053-65202289(+)$1	1	129	147	13.2798
(((((........)))))	chr13:31726917-31727180(-)$1	1	127	145	14.5379
(.(((........)))))	chr6:32943918-32944191(+)$1	1	178	196	14.2308
((.((........)))))	chr11:70255824-70256090(+)$1	1	108	126	13.5458
(((((........)))))	chr9:140672217-140672473(+)$1	1	230	248	13.9508
(((((........)))))	chr5:134126075-134126293(+)$1	1	188	206	14.3233
(((((........)))))	chr17:38189567-38189828(-)$1	1	144	162	14.6503
(((((........)))))	chr5:38886195-38886522(+)$1	1	111	129	13.9508
(..((........)))))	chr8:42177005-42177280(+)$1	1	21	39	13.7466
((.((........)))))	chr6:11229859-11230090(-)$1	1	125	143	13.5458
..(((........)))..	chr17:3727247-3727502(-)$1	1	108	126	14.6898
.((((........)))).	chr10:101372206-101372467(-)$1	1	162	180	13.0217
(((((........))).)	chr2:174228617-174228883(+)$1	1	160	178	13.6632
(((((........)))))	chr17:53374119-53374341(+)$1	1	74	92	14.6503
(.(((........)))..	chr19:9529705-9529957(-)$1	1	183	201	14.6747
(((.(........).)))	chr13:97995159-97995435(+)$1	1	77	95	14.0365
(((((........)))))	chr14:32548104-32548395(+)$1	1	15	33	14.3233
(((((........)))))	chr2:201778023-201778253(-)$1	1	92	110	13.9508
(((((........)))))	chr10:103571702-103571938(-)$1	1	131	149	14.3233
(((((........)))))	chr2:131126362-131126641(+)$1	1	19	37	14.3233
(((((........))).)	chr13:47286538-47286808(+)$1	1	52	70	14.6058
.((((........)))))	chr2:216211744-216212045(+)$1	1	197	215	12.9233
..(((........)))..	chr6:31499087-31499304(-)$1	1	32	50	12.5503
(..((........)).))	chr11:65202089-65202298(+)$1	1	93	111	13.2798
..(((........)))))	chrX:30715715-30715994(+)$1	1	171	189	14.3646
(((((........)))))	chr14:24641518-24641766(+)$1	1	130	148	14.2988
(((((........).)))	chr16:29930816-29931066(-)$1	1	190	208	14.2116
..(((........)))..	chr2:70455958-70456181(-)$1	1	31	49	14.4994
(((((........))).)	chr6:41751748-41752008(+)$1	1	142	160	13.6632
(((((........)))..	chr11:70185171-70185460(+)$1	1	192	210	14.0577
(((((........)))))	chr17:8135262-8135469(-)$1	1	145	163	14.6503
(((((........)))))	chrX:128615017-128615260(-)$1	1	213	231	14.6503
(((.(........).)))	chr2:42489496-42489705(+)$1	1	173	191	13.2755
(((((........)))))	chr2:136742306-136742572(-)$1	1	218	236	14.6503
(((((........)))))	chr21:18940361-18940597(+)$1	1	22	40	14.6503
(((((........)))))	chr11:47256592-47256865(+)$1	1	115	133	14.5379
(((.(........).)))	chr1:155884000-155884256(-)$1	1	123	141	14.4113
..(((........))).)	chr3:9516639-9516888(+)$1	1	133	151	14.2211
(((((........)))))	chr22:29192253-29192496(-)$1	1	31	49	13.9508
(((((........)))))	chr1:109855965-109856189(-)$1	1	194	212	14.6503
.((((........)))).	chr3:194174673-194174927(-)$1	1	13	31	13.0046
(((((........)))))	chrX:73494137-73494358(-)$1	1	196	214	14.3233
(((((........)))))	chr2:69583579-69583802(-)$1	1	126	144	14.3233
((.((........)).))	chr11:65190341-65190562(+)$1	1	5	23	13.4655
..(((........)))..	chr16:89590294-89590543(+)$1	1	99	117	14.0456
(.(((........))).)	chr11:65202426-65202675(+)$1	1	207	225	14.4646
(((((........)))))	chr6:144808580-144808817(+)$1	1	117	135	13.9508
(((((........))).)	chr10:105420734-105421001(-)$1	1	20	38	14.5076
(((((........)))))	chr16:2818326-2818551(+)$1	1	113	131	13.9508
(((((........)))))	chr12:71960696-71960951(+)$1	1	19	37	13.9508
(((((........)))))	chr6:159030257-159030503(+)$1	1	19	37	14.6503
(((((........)))))	chr7:138203280-138203575(+)$1	1	216	234	13.9508
(((((........)))))	chr19:19102380-19102712(-)$1	1	111	129	14.3233
(((((........)))))	chr12:57909819-57910049(+)$1	1	194	212	14.3233
(((((........)))))	chr16:75033359-75033588(+)$1	1	95	113	13.9508
((.((........)).))	chr17:34161457-34161707(+)$1	1	55	73	13.4655
(((((........)))))	chr14:35482901-35483162(+)$1	1	222	240	14.6503
(((((........)))))	chr2:219557192-219557450(+)$1	1	86	104	13.9508
(((((........)))))	chr16:4927276-4927545(+)$1	1	117	135	14.3233
(((((........)))))	chr9:32985881-32986135(-)$1	1	183	201	14.3233
(..((........))..)	chr14:95660661-95660953(-)$1	1	49	67	12.9690
(((((........)))))	chr6:16761309-16761584(-)$1	1	43	61	14.6503
(.(((........)))..	chr21:45928312-45928569(+)$1	1	38	56	14.6747
(((.(........).)))	chr6:109590831-109591075(+)$1	1	2	20	14.0753
(.(((........))).)	chr19:54971693-54971956(+)$1	1	20	38	14.4646

#PSSM
f : 0.21	e : 0.18	g : 0.17	c : 0.12	d : 0.10	! : 0.04	" : 0.04	= : 0.02	[ : 0.02	b : 0.02	# : 0.01	i : 0.01	
f : 0.20	e : 0.18	g : 0.17	c : 0.10	! : 0.08	[ : 0.07	d : 0.05	" : 0.04	= : 0.02	b : 0.02	# : 0.01	i : 0.01	
c : 0.24	e : 0.18	f : 0.18	g : 0.17	! : 0.05	[ : 0.05	d : 0.05	= : 0.02	i : 0.01	
c : 0.22	f : 0.18	e : 0.17	g : 0.15	b : 0.11	[ : 0.05	d : 0.04	= : 0.02	i : 0.01	
c : 0.22	e : 0.17	f : 0.17	g : 0.15	b : 0.11	a : 0.07	d : 0.04	= : 0.02	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.22	e : 0.17	f : 0.17	g : 0.15	b : 0.11	a : 0.07	d : 0.04	= : 0.02	i : 0.01	
c : 0.22	e : 0.17	f : 0.17	g : 0.15	b : 0.11	] : 0.07	d : 0.04	= : 0.02	i : 0.01	
c : 0.27	f : 0.20	e : 0.18	g : 0.17	] : 0.05	d : 0.05	= : 0.02	i : 0.01	2 : 0.01	
f : 0.20	e : 0.18	g : 0.17	d : 0.11	] : 0.10	c : 0.07	3 : 0.05	2 : 0.04	= : 0.02	5 : 0.01	i : 0.01	
f : 0.21	e : 0.18	g : 0.17	d : 0.12	c : 0.08	3 : 0.05	b : 0.04	= : 0.02	] : 0.02	2 : 0.02	5 : 0.01	i : 0.01	

#score	987.4547587530907
#seq	70
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_UTR_m3_run1.txt

#BEAR
[dddd[cccbbmmmmbb]cccd	chr19:8532318-8532535(+)$1	217	153	175	8.9479
ee[dddd[ccclllccc]dddd	chr12:104341409-104341685(+)$1	276	40	62	11.3176
gggggggcccmmmmccc]gggg	chrX:70793452-70793759(+)$1	307	276	298	9.5748
[bb!!bb[ccclllccc]bb55	chr7:150070029-150070311(+)$1	282	144	166	9.6463
dddd[bb[ccclllccc]bb]d	chr18:47017930-47018195(-)$1	265	141	163	10.7593
ee[dddd[ccclllccc]dddd	chr12:104341332-104341586(+)$1	254	117	139	11.3176
==========mmmm========	chr5:170814890-170815110(+)$1	220	112	134	8.8210
""a[ddddccclllccc]dddd	chr17:8076713-8076964(-)$1	251	18	40	10.8658
[bbdddd[ccclllccc]dddd	chr12:21788376-21788670(-)$1	294	45	67	11.2738
[a!!gggggggmmmmggggggg	chr8:97243080-97243373(-)$1	293	207	229	8.6698
ffff####cccmmmmccc22ff	chr5:179147314-179147562(+)$1	248	84	106	9.0736
gggggbb!!bbmmmmbb22bb4	chr8:124348512-124348762(-)$1	250	145	167	8.3274
bb!!ggggggglllggggggg2	chr6:31785376-31785663(+)$1	287	40	62	8.9517
ccc!!a!!ccclllccc22a22	chr19:3053642-3053907(-)$1	265	167	189	11.9024
ggg[ccc[cccmmmmccc]ccc	chr11:67810673-67810988(+)$1	315	155	177	10.1000
ccc[ccc[ccclllccc]ccc]	chr17:79801302-79801592(-)$1	290	238	260	11.8862
"dddd####bbmmmmbb22ddd	chr6:31797644-31797946(+)$1	302	59	81	8.9424
=======[ccclllccc333==	chr11:75111333-75111659(+)$1	326	65	87	12.6381
d[dddd!!ccclllccc22ddd	chr11:122929539-122929777(-)$1	238	180	202	11.5434
eeeee"""ccclllccc333ee	chr13:107196029-107196277(-)$1	248	64	86	11.5698
gggggggggggmmmmggggggg	chr9:127998515-127998793(-)$1	278	214	236	8.2445
[dddd!!cccmmmmccc333dd	chr10:79800301-79800545(+)$1	244	26	48	10.3506
ccc"""cccbblllbb]ccc33	chr6:27809333-27809577(+)$1	244	111	133	9.1785
!ffffff[ccclllccc]ffff	chr6:31804772-31805004(+)$1	232	97	119	10.4414

#otherMatches

#Seq PSSM
AGUCAGUAGGAUCUUUCUCUGU	chr19:8532318-8532535(+)$1	217	153	175	8.9479
UCACCAUUUGGAUCCUGUGUGG	chr12:104341409-104341685(+)$1	276	40	62	11.3176
GUCUGUACAGUACCUUGUUGCA	chrX:70793452-70793759(+)$1	307	276	298	9.5748
GCUGGGUGGGCCCUGCUAGCGA	chr7:150070029-150070311(+)$1	282	144	166	9.6463
AACAACUACUCUCUGAGCAGCU	chr18:47017930-47018195(-)$1	265	141	163	10.7593
UCACCAUUUGGAUCCUGUGUGG	chr12:104341332-104341586(+)$1	254	117	139	11.3176
UCUUUUCGGUAACUGCUGGGGG	chr5:170814890-170815110(+)$1	220	112	134	8.8210
AUCUUUUUCACUGAGUGCAGAA	chr17:8076713-8076964(-)$1	251	18	40	10.8658
AAUGAAGUCUUCCUGAGCCUUC	chr12:21788376-21788670(-)$1	294	45	67	11.2738
UGGCUGGAGUUUUUGAAUUCCA	chr8:97243080-97243373(-)$1	293	207	229	8.6698
CCGUAGGGAUGAAGACAUGGAU	chr5:179147314-179147562(+)$1	248	84	106	9.0736
UGGAGGUGAGCAUUAGUGAAUU	chr8:124348512-124348762(-)$1	250	145	167	8.3274
GGGAGGGUCUGGGUCAGGCCCC	chr6:31785376-31785663(+)$1	287	40	62	8.9517
CAAGACACAGCGGAGCUCGGGA	chr19:3053642-3053907(-)$1	265	167	189	11.9024
GGCCGCCAGCUUUGUGGCAGGU	chr11:67810673-67810988(+)$1	315	155	177	10.1000
GACUUCCGGAUCCUGUCAGGGU	chr17:79801302-79801592(-)$1	290	238	260	11.8862
AAGGACUUUGCUGCUGUUUUCC	chr6:31797644-31797946(+)$1	302	59	81	8.9424
CAGUUUCUUGUUUUGCAUGUGG	chr11:75111333-75111659(+)$1	326	65	87	12.6381
CCCUAGCACUGUCACAGACCUG	chr11:122929539-122929777(-)$1	238	180	202	11.5434
AGGGGCUAUGCUCUGCAAUUCC	chr13:107196029-107196277(-)$1	248	64	86	11.5698
UGGUGUAGGAAGUUUUUUCUAC	chr9:127998515-127998793(-)$1	278	214	236	8.2445
UUUUAAAGGCAGUUGUUGACUA	chr10:79800301-79800545(+)$1	244	26	48	10.3506
CUUGCUUCUCAAUCUGUAGACU	chr6:27809333-27809577(+)$1	244	111	133	9.1785
AGACUAGAGUCUCCGAUGCUGG	chr6:31804772-31805004(+)$1	232	97	119	10.4414

#DB
.((((.(((((....)).))))	chr19:8532318-8532535(+)$1	1	153	175	8.9479
((.((((.(((...))).))))	chr12:104341409-104341685(+)$1	1	40	62	11.3176
((((((((((....))).))))	chrX:70793452-70793759(+)$1	1	276	298	9.5748
.((..((.(((...))).))..	chr7:150070029-150070311(+)$1	1	144	166	9.6463
((((.((.(((...))).)).)	chr18:47017930-47018195(-)$1	1	141	163	10.7593
((.((((.(((...))).))))	chr12:104341332-104341586(+)$1	1	117	139	11.3176
((((((((((....))))))))	chr5:170814890-170815110(+)$1	1	112	134	8.8210
..(.(((((((...))).))))	chr17:8076713-8076964(-)$1	1	18	40	10.8658
.((((((.(((...))).))))	chr12:21788376-21788670(-)$1	1	45	67	11.2738
.(..(((((((....)))))))	chr8:97243080-97243373(-)$1	1	207	229	8.6698
((((....(((....)))..))	chr5:179147314-179147562(+)$1	1	84	106	9.0736
(((((((..((....))..)).	chr8:124348512-124348762(-)$1	1	145	167	8.3274
((..(((((((...))))))).	chr6:31785376-31785663(+)$1	1	40	62	8.9517
(((..(..(((...)))..)..	chr19:3053642-3053907(-)$1	1	167	189	11.9024
(((.(((.(((....))).)))	chr11:67810673-67810988(+)$1	1	155	177	10.1000
(((.(((.(((...))).))).	chr17:79801302-79801592(-)$1	1	238	260	11.8862
.((((....((....))..)))	chr6:31797644-31797946(+)$1	1	59	81	8.9424
(((((((.(((...)))...))	chr11:75111333-75111659(+)$1	1	65	87	12.6381
(.((((..(((...)))..)))	chr11:122929539-122929777(-)$1	1	180	202	11.5434
(((((...(((...)))...))	chr13:107196029-107196277(-)$1	1	64	86	11.5698
))))(((((((....)))))))	chr9:127998515-127998793(-)$1	1	214	236	8.2445
.((((..(((....)))...))	chr10:79800301-79800545(+)$1	1	26	48	10.3506
(((...(((((...)).)))..	chr6:27809333-27809577(+)$1	1	111	133	9.1785
.((((((.(((...))).))))	chr6:31804772-31805004(+)$1	1	97	119	10.4414

#PSSM
[ : 0.20	g : 0.16	e : 0.12	c : 0.12	d : 0.08	= : 0.08	" : 0.08	f : 0.04	b : 0.04	! : 0.04	
d : 0.16	g : 0.16	e : 0.12	b : 0.12	c : 0.12	= : 0.08	f : 0.08	" : 0.04	a : 0.04	[ : 0.04	
d : 0.20	g : 0.16	c : 0.12	[ : 0.08	b : 0.08	= : 0.08	! : 0.08	f : 0.08	a : 0.04	e : 0.04	
d : 0.33	! : 0.16	g : 0.12	[ : 0.12	= : 0.08	f : 0.08	e : 0.04	" : 0.04	
d : 0.33	g : 0.20	! : 0.08	= : 0.08	c : 0.08	[ : 0.04	# : 0.04	e : 0.04	" : 0.04	f : 0.04	
d : 0.20	g : 0.16	b : 0.12	= : 0.08	# : 0.08	c : 0.08	" : 0.08	[ : 0.04	a : 0.04	! : 0.04	f : 0.04	
c : 0.16	d : 0.16	g : 0.16	b : 0.12	! : 0.12	= : 0.08	# : 0.08	" : 0.04	f : 0.04	
[ : 0.37	c : 0.16	g : 0.12	! : 0.12	# : 0.08	= : 0.04	d : 0.04	" : 0.04	
c : 0.74	g : 0.12	= : 0.04	! : 0.04	# : 0.04	
c : 0.66	b : 0.16	g : 0.12	= : 0.04	
c : 0.58	b : 0.16	m : 0.12	g : 0.12	
l : 0.58	m : 0.41	
l : 0.58	m : 0.41	
l : 0.58	m : 0.41	
c : 0.58	m : 0.29	= : 0.04	g : 0.04	b : 0.04	
c : 0.66	b : 0.16	g : 0.12	= : 0.04	
c : 0.66	b : 0.12	g : 0.12	= : 0.04	] : 0.04	
] : 0.41	2 : 0.16	g : 0.12	c : 0.12	3 : 0.12	= : 0.04	
2 : 0.20	d : 0.16	g : 0.16	c : 0.12	3 : 0.12	b : 0.08	= : 0.04	] : 0.04	f : 0.04	
d : 0.24	c : 0.16	g : 0.16	b : 0.12	3 : 0.12	= : 0.04	2 : 0.04	a : 0.04	f : 0.04	
d : 0.29	g : 0.16	c : 0.12	= : 0.08	f : 0.08	5 : 0.04	] : 0.04	b : 0.04	2 : 0.04	e : 0.04	3 : 0.04	
d : 0.37	g : 0.12	= : 0.08	f : 0.08	2 : 0.08	5 : 0.04	4 : 0.04	c : 0.04	] : 0.04	e : 0.04	3 : 0.04	

#score	244.3450430940999
#seq	24
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_CDS_m2_run2.txt

#BEAR
fffddddqqqqqqqqddddddd	chr1:9931937-9932206(-)$1	269	184	206	14.2718
ee!!cccqqqqqqqqccc22ee	chr2:170493882-170494120(+)$1	238	88	110	15.9587
:ffffffqqqqqqqqfffffff	chr1:45101601-45101860(+)$1	259	6	28	13.4671
[bb[cccqqqqqqqqccc]bb]	chr5:137902689-137902950(-)$1	261	17	39	15.1902
h####bbqqqqqqqqbb333hh	chr10:92655118-92655341(+)$1	223	91	113	14.1690
iiiiiiiqqqqqqqqiiiiiii	chr8:74893736-74894057(+)$1	321	280	302	15.1737
d[eeeeeqqqqqqqqeeeee]d	chr10:12272868-12273095(+)$1	227	120	142	14.5757
[ffffffqqqqqqqqffffff]	chr3:182662695-182663022(-)$1	327	93	115	14.6985
c!!acccqqqqqqqqccc]a22	chr1:165620157-165620400(+)$1	243	152	174	15.9030
ddd[cccqqqqqqqqcccdddd	chr17:38557053-38557284(-)$1	231	93	115	15.2561
gggggggqqqqqqqqggggggg	chr3:10342629-10342910(-)$1	281	1	23	15.3665
gg[ddddqqqqqqqqddddggg	chr3:185639791-185640015(-)$1	224	198	220	15.1713
gggggggqqqqqqqqggggggg	chr5:37291804-37292113(-)$1	309	21	43	15.3665
gg[ddddqqqqqqqqdddd]gg	chr1:156109451-156109700(+)$1	249	96	118	15.2067
ee!!cccqqqqqqqqccc]eee	chr6:119509503-119509729(-)$1	226	119	141	16.1542
"ffffffqqqqqqqqffffff4	chr16:1818717-1819009(+)$1	292	77	99	14.5713
ff[ddddqqqqqqqqdddd333	chr16:58555104-58555322(-)$1	218	41	63	15.3036
gggggggqqqqqqqqggggggg	chr2:219447593-219447810(+)$1	217	84	106	15.3665
d:eeeeeqqqqqqqqeeeeecc	chr11:118455244-118455459(+)$1	215	110	132	13.5255
cceeeeeqqqqqqqqeeeee]c	chr17:27076173-27076426(+)$1	253	126	148	14.6511
!!eeeeeqqqqqqqqeeeee22	chr5:96362353-96362561(+)$1	208	60	82	14.6020
ccc[cccqqqqqqqqcccccc:	chr17:38557001-38557233(-)$1	232	42	64	14.9538
ccc[cccqqqqqqqqcccccc3	chr10:5815703-5815995(-)$1	292	18	40	16.0398
ee!!cccqqqqqqqqccc22ee	chr2:170493845-170494082(+)$1	237	125	147	15.9587
""eeeeeqqqqqqqqeeeee33	chr11:118452008-118452247(+)$1	239	143	165	14.9151
ddd[cccqqqqqqqqccc]ddd	chr6:155141212-155141484(+)$1	272	210	232	15.4503
####cccqqqqqqqqccc4444	chr2:70105998-70106266(+)$1	268	72	94	16.0013
gg[ddddqqqqqqqqddddggg	chr1:53699175-53699425(-)$1	250	64	86	15.1713
]ccccccqqqqqqqqccceeee	chr1:154197484-154197750(+)$1	266	106	128	15.3604
gggggggqqqqqqqqggggggg	chr7:44880393-44880662(-)$1	269	30	52	15.3665
gggggggqqqqqqqqggggggg	chr9:71869444-71869699(+)$1	255	61	83	15.3665
a[eeeeeqqqqqqqqeeeee]a	chrX:123019844-123020098(+)$1	254	109	131	14.6689
[ccc[bbqqqqqqqqbb]ccc]	chr15:63933663-63933943(-)$1	280	187	209	14.3876
f!!ddddqqqqqqqqdddd333	chr5:61686597-61686836(+)$1	239	205	227	15.4117
cbbddddqqqqqqqqdddd]bb	chr9:127911945-127912219(-)$1	274	208	230	13.7421
#ffffffqqqqqqqqffffff3	chr6:99994176-99994465(-)$1	289	221	243	14.6617
b"""cccqqqqqqqqccc333b	chr15:44952539-44952790(-)$1	251	102	124	15.8759
!ffffffqqqqqqqqffffff2	chr17:73131992-73132259(-)$1	267	151	173	14.5491
ffff[bbqqqqqqqqbb22fff	chr1:37959231-37959539(-)$1	308	108	130	13.6910
dddddbbqqqqqqqqbb]dddd	chr4:41941276-41941501(+)$1	225	120	142	13.5430
ccc[cccqqqqqqqqccc]ccc	chr3:49064292-49064505(-)$1	213	58	80	16.0685
bb"""bbqqqqqqqqbb333bb	chr1:39775219-39775468(+)$1	249	167	189	13.7419
eee[cccqqqqqqqqccc]eee	chr8:21862488-21862759(+)$1	271	79	101	15.9393
=======qqqqqqqq=======	chr17:38556808-38557015(-)$1	207	65	87	15.5219
ccc[cccqqqqqqqqccc]ccc	chr9:138395391-138395651(+)$1	260	216	238	16.0685
ee!!cccqqqqqqqqccc22ee	chr14:23057818-23058108(-)$1	290	232	254	15.9587
Fffffffqqqqqqqqffffffd	chr3:32754618-32754923(+)$1	305	114	136	14.0142
ddd[cccqqqqqqqqccc22dd	chr12:132636829-132637103(+)$1	274	7	29	15.4023
gggggggqqqqqqqqggggggg	chr14:52466324-52466590(+)$1	266	44	66	15.3665
ee!!cccqqqqqqqqccc]eee	chr16:85011429-85011654(-)$1	225	87	109	16.1542
eeeeebbqqqqqqqqbb]eeee	chr14:70238060-70238277(+)$1	217	36	58	14.0727
"""ddddqqqqqqqqddddggg	chr19:39899048-39899320(+)$1	272	78	100	15.0652
dd[ddddqqqqqqqqdddd333	chr9:33113351-33113635(-)$1	284	204	226	15.2094
gg!!cccqqqqqqqqccc22gg	chr8:103274042-103274286(-)$1	244	80	102	16.2815
[a[ddddqqqqqqqqdddda]d	chr1:95615661-95615899(+)$1	238	145	167	14.9849
&&eeeeeqqqqqqqqeeeeea]	chr6:151686880-151687171(-)$1	291	86	108	13.4310
::ccc[aqqqqqqqqa]cccii	chr16:27246401-27246675(-)$1	274	59	81	13.0947
ee[ddddqqqqqqqqddddeee	chr2:201756726-201757006(+)$1	280	180	202	14.8285
ddd[a[aqqqqqqqqaa]dddd	chr6:34215143-34215362(-)$1	219	119	141	14.3251
ddd[cccqqqqqqqqccc333d	chr5:162868791-162869005(+)$1	214	152	174	16.0044
fffff[aqqqqqqqqaffffff	chr1:165876952-165877282(+)$1	330	255	277	14.3806
cc::cccqqqqqqqqccceeee	chr22:42076145-42076371(-)$1	226	83	105	13.6693
[ffffffqqqqqqqqffffff]	chrX:39911185-39911506(-)$1	321	251	273	14.6985

#otherMatches

#Seq PSSM
GUGCCUGUGGGGUGUCAGGCAG	chr1:9931937-9932206(-)$1	269	184	206	14.2718
GAAAAAAAUAAAAAAUUUGAUC	chr2:170493882-170494120(+)$1	238	88	110	15.9587
CACAGCUGGGGCUAGAGCUGUG	chr1:45101601-45101860(+)$1	259	6	28	13.4671
UGGUUAUUGAAAUUUAUAUCCU	chr5:137902689-137902950(-)$1	261	17	39	15.1902
GAAUGUAAUUAUAUCUAGUGCU	chr10:92655118-92655341(+)$1	223	91	113	14.1690
UAUGUUUGAAAACCAAAAUGUA	chr8:74893736-74894057(+)$1	321	280	302	15.1737
AUAUGAGGUAAGAAGCUUAUUU	chr10:12272868-12273095(+)$1	227	120	142	14.5757
GAAUUUGCACGCCCUCAAAUUG	chr3:182662695-182663022(-)$1	327	93	115	14.6985
AGCCCACCAGAACACGUGAGUG	chr1:165620157-165620400(+)$1	243	152	174	15.9030
GGGUGGUCCUGCAAAAUCCCCA	chr17:38557053-38557284(-)$1	231	93	115	15.2561
UCCAGGACUGCCCCUUCCUGGG	chr3:10342629-10342910(-)$1	281	1	23	15.3665
ACAUGGGGAGACCUACCUAGUA	chr3:185639791-185640015(-)$1	224	198	220	15.1713
UGAGCUCCAGUCUAUGAGCUCG	chr5:37291804-37292113(-)$1	309	21	43	15.3665
GUAUUUUAUUUAGACAAGAGAU	chr1:156109451-156109700(+)$1	249	96	118	15.2067
AUGAUCCAAAGUACAGGAAAUG	chr6:119509503-119509729(-)$1	226	119	141	16.1542
CGUGUGGCAGGUGUCCUACACC	chr16:1818717-1819009(+)$1	292	77	99	14.5713
AGAAUAAUCAUGAAUUUGUAUG	chr16:58555104-58555322(-)$1	218	41	63	15.3036
GAUUUCCAUUUUUUAGGAAAUU	chr2:219447593-219447810(+)$1	217	84	106	15.3665
GAAAGGUAAGUAGGAACUUUGA	chr11:118455244-118455459(+)$1	215	110	132	13.5255
CCUUUGACAAUCUCCUUGAGUG	chr17:27076173-27076426(+)$1	253	126	148	14.6511
ACUGGCAUGGGAUUUUGUCAAA	chr5:96362353-96362561(+)$1	208	60	82	14.6020
GGGUGGUCCUGCAAAAUCCCCA	chr17:38557001-38557233(-)$1	232	42	64	14.9538
AAGAUCUAAGAAAGGGGACUUU	chr10:5815703-5815995(-)$1	292	18	40	16.0398
GAAAAAAAUAAAAAAUUUGAUC	chr2:170493845-170494082(+)$1	237	125	147	15.9587
UAUGGUACUGAUCACUACCAAA	chr11:118452008-118452247(+)$1	239	143	165	14.9151
GUUUUGCAGAAGGAGGCAUGAU	chr6:155141212-155141484(+)$1	272	210	232	15.4503
CUUCUGAUCUUCCCUUUAUAUA	chr2:70105998-70106266(+)$1	268	72	94	16.0013
GAUACAACAUACAUUUUGUUUU	chr1:53699175-53699425(-)$1	250	64	86	15.1713
AUACUGUAAAUGAUGACAUCGG	chr1:154197484-154197750(+)$1	266	106	128	15.3604
ACUAAGACAUCUCUCUUUUAGU	chr7:44880393-44880662(-)$1	269	30	52	15.3665
UUUUGUUCAGAAUUAAGCAGAA	chr9:71869444-71869699(+)$1	255	61	83	15.3665
GAUAUAUCAGACACCAUAUACC	chrX:123019844-123020098(+)$1	254	109	131	14.6689
UGUUCUGGGAUUGAACAUGGCU	chr15:63933663-63933943(-)$1	280	187	209	14.3876
GUAUUAUCUAUCAAUAUAAGAU	chr5:61686597-61686836(+)$1	239	205	227	15.4117
GCAGUUCCAGAUUCAGAACGUG	chr9:127911945-127912219(-)$1	274	208	230	13.7421
GGAUGUUUAAAAAUUAAUGUCA	chr6:99994176-99994465(-)$1	289	221	243	14.6617
CAUUUUGUAUAGCUGUAGUAGG	chr15:44952539-44952790(-)$1	251	102	124	15.8759
UUGUUUCAUUAAAAAGAAGCAC	chr17:73131992-73132259(-)$1	267	151	173	14.5491
GUUUCUCCCUUCUUAGAAUGAA	chr1:37959231-37959539(-)$1	308	108	130	13.6910
ACAAGUAUCCUUUUCUACCUUG	chr4:41941276-41941501(+)$1	225	120	142	13.5430
CCUGCAGGCAUCACACUGAAGG	chr3:49064292-49064505(-)$1	213	58	80	16.0685
CCCCAGGCUUACAUUCCAUUGG	chr1:39775219-39775468(+)$1	249	167	189	13.7419
AUGGCGUGAAUAGCAAUGACAU	chr8:21862488-21862759(+)$1	271	79	101	15.9393
UAGAAAACAUACUGUUUUUUUA	chr17:38556808-38557015(-)$1	207	65	87	15.5219
GGCAUGCUGACCAACGCGCGCC	chr9:138395391-138395651(+)$1	260	216	238	16.0685
GUGUGGGGAGUUUCAUCCUAGC	chr14:23057818-23058108(-)$1	290	232	254	15.9587
CAAGCAGUGUGUUUUUUGCUUG	chr3:32754618-32754923(+)$1	305	114	136	14.0142
GGGACCUGAAGAAGAAGGGGCC	chr12:132636829-132637103(+)$1	274	7	29	15.4023
UUUGUAAUUAUACGUUUGCAGG	chr14:52466324-52466590(+)$1	266	44	66	15.3665
AUUUCAGUUCAUCUCCUGUGUC	chr16:85011429-85011654(-)$1	225	87	109	16.1542
UAGAUCUAAGUCUCCAGCAUCU	chr14:70238060-70238277(+)$1	217	36	58	14.0727
ACUCCUAUCAGCGUCUGGGGGC	chr19:39899048-39899320(+)$1	272	78	100	15.0652
AGACCUGAAAUUAGCCAGGGAC	chr9:33113351-33113635(-)$1	284	204	226	15.2094
UGUUUUCUCAGCAAUGGAUUUG	chr8:103274042-103274286(-)$1	244	80	102	16.2815
GGCUACCUCAUUUCUGGUAUGU	chr1:95615661-95615899(+)$1	238	145	167	14.9849
UAUCCAGAAAAGCCACUGGAGG	chr6:151686880-151687171(-)$1	291	86	108	13.4310
UGCCACCGUAGAUAAGUUGGAG	chr16:27246401-27246675(-)$1	274	59	81	13.0947
GUGCUGCAAAAGAAGGCAGACC	chr2:201756726-201757006(+)$1	280	180	202	14.8285
GUGAGUGUCCCUGUCCCCCACC	chr6:34215143-34215362(-)$1	219	119	141	14.3251
UGCAGGAUCAUAUUUUCUAAAG	chr5:162868791-162869005(+)$1	214	152	174	16.0044
UUUGUACUUUGGAACGACAAAA	chr1:165876952-165877282(+)$1	330	255	277	14.3806
GUCAUGUAACUAUAAGCAGCUU	chr22:42076145-42076371(-)$1	226	83	105	13.6693
AUCUCUUCUUUAUAUAAGAGAA	chrX:39911185-39911506(-)$1	321	251	273	14.6985

#DB
)))((((........))))(((	chr1:9931937-9932206(-)$1	1	184	206	14.2718
((..(((........)))..))	chr2:170493882-170494120(+)$1	1	88	110	15.9587
.((((((........))))))(	chr1:45101601-45101860(+)$1	1	6	28	13.4671
.((.(((........))).)).	chr5:137902689-137902950(-)$1	1	17	39	15.1902
(....((........))...))	chr10:92655118-92655341(+)$1	1	91	113	14.1690
(((((((........)))))))	chr8:74893736-74894057(+)$1	1	280	302	15.1737
(.(((((........))))).)	chr10:12272868-12273095(+)$1	1	120	142	14.5757
.((((((........)))))).	chr3:182662695-182663022(-)$1	1	93	115	14.6985
(..((((........))).)..	chr1:165620157-165620400(+)$1	1	152	174	15.9030
(((.(((........)))))))	chr17:38557053-38557284(-)$1	1	93	115	15.2561
(((((((........)))))))	chr3:10342629-10342910(-)$1	1	1	23	15.3665
((.((((........)))))))	chr3:185639791-185640015(-)$1	1	198	220	15.1713
(((((((........)))))))	chr5:37291804-37292113(-)$1	1	21	43	15.3665
((.((((........)))).))	chr1:156109451-156109700(+)$1	1	96	118	15.2067
((..(((........))).)))	chr6:119509503-119509729(-)$1	1	119	141	16.1542
.((((((........)))))).	chr16:1818717-1819009(+)$1	1	77	99	14.5713
((.((((........))))...	chr16:58555104-58555322(-)$1	1	41	63	15.3036
(((((((........)))))))	chr2:219447593-219447810(+)$1	1	84	106	15.3665
).(((((........)))))((	chr11:118455244-118455459(+)$1	1	110	132	13.5255
(((((((........))))).)	chr17:27076173-27076426(+)$1	1	126	148	14.6511
..(((((........)))))..	chr5:96362353-96362561(+)$1	1	60	82	14.6020
(((.(((........)))))).	chr17:38557001-38557233(-)$1	1	42	64	14.9538
(((.(((........)))))).	chr10:5815703-5815995(-)$1	1	18	40	16.0398
((..(((........)))..))	chr2:170493845-170494082(+)$1	1	125	147	15.9587
..(((((........)))))..	chr11:118452008-118452247(+)$1	1	143	165	14.9151
(((.(((........))).)))	chr6:155141212-155141484(+)$1	1	210	232	15.4503
....(((........)))....	chr2:70105998-70106266(+)$1	1	72	94	16.0013
((.((((........)))))))	chr1:53699175-53699425(-)$1	1	64	86	15.1713
.)))(((........)))((((	chr1:154197484-154197750(+)$1	1	106	128	15.3604
(((((((........)))))))	chr7:44880393-44880662(-)$1	1	30	52	15.3665
(((((((........)))))))	chr9:71869444-71869699(+)$1	1	61	83	15.3665
(.(((((........))))).)	chrX:123019844-123020098(+)$1	1	109	131	14.6689
.(((.((........)).))).	chr15:63933663-63933943(-)$1	1	187	209	14.3876
(..((((........))))...	chr5:61686597-61686836(+)$1	1	205	227	15.4117
(((((((........)))).))	chr9:127911945-127912219(-)$1	1	208	230	13.7421
.((((((........)))))).	chr6:99994176-99994465(-)$1	1	221	243	14.6617
(...(((........)))...)	chr15:44952539-44952790(-)$1	1	102	124	15.8759
.((((((........)))))).	chr17:73131992-73132259(-)$1	1	151	173	14.5491
((((.((........))..)))	chr1:37959231-37959539(-)$1	1	108	130	13.6910
(((((((........)).))))	chr4:41941276-41941501(+)$1	1	120	142	13.5430
(((.(((........))).)))	chr3:49064292-49064505(-)$1	1	58	80	16.0685
((...((........))...))	chr1:39775219-39775468(+)$1	1	167	189	13.7419
(((.(((........))).)))	chr8:21862488-21862759(+)$1	1	79	101	15.9393
(((((((........)))))))	chr17:38556808-38557015(-)$1	1	65	87	15.5219
(((.(((........))).)))	chr9:138395391-138395651(+)$1	1	216	238	16.0685
((..(((........)))..))	chr14:23057818-23058108(-)$1	1	232	254	15.9587
(((((((........))))))(	chr3:32754618-32754923(+)$1	1	114	136	14.0142
(((.(((........)))..))	chr12:132636829-132637103(+)$1	1	7	29	15.4023
(((((((........)))))))	chr14:52466324-52466590(+)$1	1	44	66	15.3665
((..(((........))).)))	chr16:85011429-85011654(-)$1	1	87	109	16.1542
(((((((........)).))))	chr14:70238060-70238277(+)$1	1	36	58	14.0727
...((((........)))))))	chr19:39899048-39899320(+)$1	1	78	100	15.0652
((.((((........))))...	chr9:33113351-33113635(-)$1	1	204	226	15.2094
((..(((........)))..))	chr8:103274042-103274286(-)$1	1	80	102	16.2815
.(.((((........))))).)	chr1:95615661-95615899(+)$1	1	145	167	14.9849
..(((((........)))))).	chr6:151686880-151687171(-)$1	1	86	108	13.4310
..(((.(........).)))((	chr16:27246401-27246675(-)$1	1	59	81	13.0947
((.((((........)))))))	chr2:201756726-201757006(+)$1	1	180	202	14.8285
(((.(.(........)).))))	chr6:34215143-34215362(-)$1	1	119	141	14.3251
(((.(((........)))...)	chr5:162868791-162869005(+)$1	1	152	174	16.0044
(((((.(........)))))))	chr1:165876952-165877282(+)$1	1	255	277	14.3806
))..(((........)))((((	chr22:42076145-42076371(-)$1	1	83	105	13.6693
.((((((........)))))).	chrX:39911185-39911506(-)$1	1	251	273	14.6985

#PSSM
g : 0.15	d : 0.14	e : 0.12	c : 0.12	f : 0.07	[ : 0.07	" : 0.04	: : 0.03	! : 0.03	# : 0.03	b : 0.03	h : 0.01	i : 0.01	] : 0.01	a : 0.01	= : 0.01	F : 0.01	& : 0.01	
f : 0.17	g : 0.15	e : 0.12	c : 0.12	d : 0.11	b : 0.04	! : 0.04	" : 0.04	# : 0.03	[ : 0.03	: : 0.03	i : 0.01	= : 0.01	a : 0.01	& : 0.01	
f : 0.15	e : 0.14	! : 0.12	[ : 0.11	c : 0.11	d : 0.09	g : 0.09	" : 0.04	b : 0.03	# : 0.03	i : 0.01	= : 0.01	: : 0.01	
d : 0.19	[ : 0.17	f : 0.14	e : 0.12	! : 0.09	g : 0.09	c : 0.04	# : 0.03	" : 0.03	i : 0.01	a : 0.01	= : 0.01	: : 0.01	
c : 0.34	d : 0.19	f : 0.12	e : 0.12	g : 0.09	[ : 0.03	# : 0.01	i : 0.01	" : 0.01	= : 0.01	a : 0.01	
c : 0.33	d : 0.17	f : 0.11	e : 0.11	b : 0.09	g : 0.09	[ : 0.04	i : 0.01	= : 0.01	
c : 0.33	d : 0.17	f : 0.11	e : 0.11	b : 0.09	g : 0.09	a : 0.04	i : 0.01	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.33	d : 0.17	f : 0.11	e : 0.11	b : 0.09	g : 0.09	a : 0.04	i : 0.01	= : 0.01	
c : 0.33	d : 0.17	f : 0.12	e : 0.11	b : 0.09	g : 0.09	i : 0.01	= : 0.01	] : 0.01	a : 0.01	
c : 0.34	d : 0.17	f : 0.12	e : 0.11	g : 0.09	] : 0.06	3 : 0.03	i : 0.01	2 : 0.01	= : 0.01	
d : 0.22	e : 0.15	f : 0.12	] : 0.12	2 : 0.09	g : 0.09	3 : 0.06	c : 0.06	i : 0.01	4 : 0.01	= : 0.01	
e : 0.22	f : 0.14	g : 0.14	3 : 0.11	c : 0.09	d : 0.07	2 : 0.07	a : 0.03	] : 0.03	b : 0.01	i : 0.01	4 : 0.01	= : 0.01	
g : 0.17	e : 0.15	f : 0.14	d : 0.09	3 : 0.09	c : 0.09	] : 0.06	b : 0.04	i : 0.03	2 : 0.03	h : 0.01	4 : 0.01	= : 0.01	a : 0.01	
g : 0.17	d : 0.15	e : 0.15	3 : 0.09	] : 0.07	c : 0.06	f : 0.04	2 : 0.04	b : 0.04	i : 0.03	4 : 0.03	h : 0.01	: : 0.01	a : 0.01	= : 0.01	

#score	943.3487840604262
#seq	63
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF036IYW_NSUN2_transcript_m2_run1.txt

#BEAR
g!!bboooooobbgg	chr6:28806124-28806332(-)$1	208	156	171	9.3081
eeeeeooooooeeee	chr1:21049412-21049638(-)$1	226	68	83	11.2810
:ddddoooooodddd	chr16:3207317-3207521(-)$1	204	145	160	10.5933
:ddddoooooodddd	chr16:3207295-3207510(-)$1	215	134	149	10.5933
ee[bboooooobbee	chr5:12918301-12918507(-)$1	206	45	60	9.9716
eeeeeooooooeeee	chr17:37309870-37310087(-)$1	217	0	15	11.2810
eeeeeooooooeeee	chr6:26988106-26988314(+)$1	208	132	147	11.2810
ddd[aooooooa]dd	chr16:3239569-3239780(+)$1	211	66	81	10.5914
$ddddoooooodddd	chr15:79152859-79153063(+)$1	204	82	97	11.3306
eeeeeooooooeeee	chr17:37309902-37310105(-)$1	203	131	146	11.2810
ddd[aooooooa]dd	chr16:3239588-3239792(+)$1	204	47	62	10.5914
eeeeeooooooeeee	chr17:73031160-73031363(+)$1	203	6	21	11.2810
=====oooooo====	chr19:1648815-1649041(-)$1	226	144	159	9.9800
eeeeeooooooeeee	chrM:12078-12290(+)$1	212	163	178	11.2810
=ddddoooooodddd	chr17:73029950-73030193(+)$1	243	132	147	11.4565
eeeeeooooooeeee	chr6:26988102-26988306(+)$1	204	136	151	11.2810
cc[bboooooobbcc	chr2:30845332-30845548(+)$1	216	193	208	9.2468
dddddoooooodddd	chr7:139025391-139025611(+)$1	220	85	100	11.3431
=ddddoooooodddd	chr17:73029939-73030150(+)$1	211	143	158	11.4565
fffffooooooffff	chr16:70812825-70813029(-)$1	204	126	141	9.3693
fffffooooooffff	chr5:180618572-180618802(-)$1	230	176	191	9.3693
fffffooooooffff	chr7:149286054-149286300(-)$1	246	155	170	9.3693
:ddddoooooodddd	chr7:139025411-139025632(+)$1	221	132	147	10.5933
eeeeeooooooeeee	chr17:73031163-73031377(+)$1	214	3	18	11.2810
eeeeeooooooeeee	chrM:12060-12278(+)$1	218	181	196	11.2810
eeeeeooooooeeee	chrY:6931104-6931311(+)$1	207	33	48	11.2810
[ddddoooooodddd	chr17:19411437-19411648(+)$1	211	155	170	11.5295
"ddddoooooodddd	chr2:141612149-141612359(-)$1	210	82	97	11.5209
"ddddoooooodddd	chr2:141612163-141612367(-)$1	204	90	105	11.5209
$ddddoooooodddd	chr14:58706495-58706737(-)$1	242	90	105	11.3306
bddddoooooodddd	chr16:3207310-3207517(-)$1	207	141	156	11.1932
dd[bboooooobbdd	chr12:1948172-1948379(-)$1	207	23	38	9.8859
$ddddoooooodddd	chr15:79152863-79153074(+)$1	211	78	93	11.3306
eeecccooooooccc	chr8:69629431-69629666(+)$1	235	57	72	8.8044
eee[aooooooa]ee	chr5:180692576-180692792(+)$1	216	171	186	10.6603
eeeeeooooooeeee	chr17:73031151-73031360(+)$1	209	15	30	11.2810
e!!bboooooobb22	chr3:127793875-127794123(-)$1	248	137	152	8.7974
[ddddoooooodddd	chr17:19411448-19411681(+)$1	233	144	159	11.5295
eeeeeooooooeeee	chr5:177019281-177019496(+)$1	215	50	65	11.2810
fffffooooooffff	chrM:12055-12260(+)$1	205	186	201	9.3693
g!!bboooooobbgg	chr6:28806132-28806336(-)$1	204	160	175	9.3081
"ddddoooooodddd	chr2:141612167-141612372(-)$1	205	95	110	11.5209
""cccooooooccc3	chr17:8124078-8124301(-)$1	223	151	166	9.8299
:ddddoooooodddd	chr5:139345229-139345432(-)$1	203	145	160	10.5933
fffffooooooffff	chr1:17199038-17199256(+)$1	218	14	29	9.3693
ddcccooooooccc]	chr11:66115555-66115768(+)$1	213	24	39	10.0511
:ddddoooooodddd	chr17:8126037-8126247(-)$1	210	5	20	10.5933
eeeeeooooooeeee	chr19:1648854-1649094(-)$1	240	45	60	11.2810
eeeeeooooooeeee	chr19:9982750-9982961(-)$1	211	12	27	11.2810
[ddddoooooodddd	chr16:3241458-3241680(+)$1	222	144	159	11.5295
$ddddoooooodddd	chr15:79152874-79153088(+)$1	214	67	82	11.3306
fffffooooooffff	chr1:17199031-17199238(+)$1	207	21	36	9.3693

#otherMatches

#Seq PSSM
CCUUGCUUAAACAGA	chr6:28806124-28806332(-)$1	208	156	171	9.3081
ucccaaagugcuggg	chr1:21049412-21049638(-)$1	226	68	83	11.2810
AACUUGGAAGAAAGU	chr16:3207317-3207521(-)$1	204	145	160	10.5933
AACUUGGAAGAAAGU	chr16:3207295-3207510(-)$1	215	134	149	10.5933
ucuaggacaaacuga	chr5:12918301-12918507(-)$1	206	45	60	9.9716
CGACUACGUGCGGUC	chr17:37309870-37310087(-)$1	217	0	15	11.2810
GCAUUACUUGAAGUG	chr6:26988106-26988314(+)$1	208	132	147	11.2810
cucguuggucuaggg	chr16:3239569-3239780(+)$1	211	66	81	10.5914
ucccagggucguggg	chr15:79152859-79153063(+)$1	204	82	97	11.3306
CGAGAUACUGUUUUU	chr17:37309902-37310105(-)$1	203	131	146	11.2810
cucguuggucuaggg	chr16:3239588-3239792(+)$1	204	47	62	10.5914
GGCCAUCAAAUUGGC	chr17:73031160-73031363(+)$1	203	6	21	11.2810
CCUGGAGAAGCCCAG	chr19:1648815-1649041(-)$1	226	144	159	9.9800
CAUGUCUAACAACAU	chrM:12078-12290(+)$1	212	163	178	11.2810
GUUCCUUUUACGGAA	chr17:73029950-73030193(+)$1	243	132	147	11.4565
GCAUUACUUGAAGUG	chr6:26988102-26988306(+)$1	204	136	151	11.2810
gaagccugguagcuc	chr2:30845332-30845548(+)$1	216	193	208	9.2468
cuccuaagccaggga	chr7:139025391-139025611(+)$1	220	85	100	11.3431
GUUCCUUUUACGGAA	chr17:73029939-73030150(+)$1	211	143	158	11.4565
ACUUGGAGAAAUAAG	chr16:70812825-70813029(-)$1	204	126	141	9.3693
UUCCGCCUUCCUGGG	chr5:180618572-180618802(-)$1	230	176	191	9.3693
AACAUGAUAUGAUGU	chr7:149286054-149286300(-)$1	246	155	170	9.3693
CCUUUCUAAACAAAG	chr7:139025411-139025632(+)$1	221	132	147	10.5933
GGCCAUCAAAUUGGC	chr17:73031163-73031377(+)$1	214	3	18	11.2810
CAUGUCUAACAACAU	chrM:12060-12278(+)$1	218	181	196	11.2810
ccgccacaaggggug	chrY:6931104-6931311(+)$1	207	33	48	11.2810
UAAUUGUAGAGGAUU	chr17:19411437-19411648(+)$1	211	155	170	11.5295
auguaaaccaaugca	chr2:141612149-141612359(-)$1	210	82	97	11.5209
auguaaaccaaugca	chr2:141612163-141612367(-)$1	204	90	105	11.5209
ucccagggucguggg	chr14:58706495-58706737(-)$1	242	90	105	11.3306
AACUUGGAAGAAAGU	chr16:3207310-3207517(-)$1	207	141	156	11.1932
UCGCAGCAGGAUGGG	chr12:1948172-1948379(-)$1	207	23	38	9.8859
ucccagggucguggg	chr15:79152863-79153074(+)$1	211	78	93	11.3306
auaagugacaaaacu	chr8:69629431-69629666(+)$1	235	57	72	8.8044
AGGAGAGAGGGCCCC	chr5:180692576-180692792(+)$1	216	171	186	10.6603
GGCCAUCAAAUUGGC	chr17:73031151-73031360(+)$1	209	15	30	11.2810
auaggaccuugcucu	chr3:127793875-127794123(-)$1	248	137	152	8.7974
UAAUUGUAGAGGAUU	chr17:19411448-19411681(+)$1	233	144	159	11.5295
CUUUCACAUCGGAGA	chr5:177019281-177019496(+)$1	215	50	65	11.2810
CAUGUCUAACAACAU	chrM:12055-12260(+)$1	205	186	201	9.3693
CCUUGCUUAAACAGA	chr6:28806132-28806336(-)$1	204	160	175	9.3081
auguaaaccaaugca	chr2:141612167-141612372(-)$1	205	95	110	11.5209
GGUGACAUUUUUCAG	chr17:8124078-8124301(-)$1	223	151	166	9.8299
AAGGAGAUAUAUCUU	chr5:139345229-139345432(-)$1	203	145	160	10.5933
GGGAGACAAAGCUCC	chr1:17199038-17199256(+)$1	218	14	29	9.3693
CUGUCACGUAGgacg	chr11:66115555-66115768(+)$1	213	24	39	10.0511
CGCGGCAACGUCCGC	chr17:8126037-8126247(-)$1	210	5	20	10.5933
GAGGGUGCUGGUCCU	chr19:1648854-1649094(-)$1	240	45	60	11.2810
ucccgaagugcuggg	chr19:9982750-9982961(-)$1	211	12	27	11.2810
UCUGGAAACAGCCAG	chr16:3241458-3241680(+)$1	222	144	159	11.5295
ucccagggucguggg	chr15:79152874-79153088(+)$1	214	67	82	11.3306
GGGAGACAAAGCUCC	chr1:17199031-17199238(+)$1	207	21	36	9.3693

#DB
(..((......))))	chr6:28806124-28806332(-)$1	1	156	171	9.3081
(((((......))))	chr1:21049412-21049638(-)$1	1	68	83	11.2810
.((((......))))	chr16:3207317-3207521(-)$1	1	145	160	10.5933
.((((......))))	chr16:3207295-3207510(-)$1	1	134	149	10.5933
((.((......))))	chr5:12918301-12918507(-)$1	1	45	60	9.9716
(((((......))))	chr17:37309870-37310087(-)$1	1	0	15	11.2810
(((((......))))	chr6:26988106-26988314(+)$1	1	132	147	11.2810
(((.(......).))	chr16:3239569-3239780(+)$1	1	66	81	10.5914
.((((......))))	chr15:79152859-79153063(+)$1	1	82	97	11.3306
(((((......))))	chr17:37309902-37310105(-)$1	1	131	146	11.2810
(((.(......).))	chr16:3239588-3239792(+)$1	1	47	62	10.5914
(((((......))))	chr17:73031160-73031363(+)$1	1	6	21	11.2810
(((((......))))	chr19:1648815-1649041(-)$1	1	144	159	9.9800
(((((......))))	chrM:12078-12290(+)$1	1	163	178	11.2810
(((((......))))	chr17:73029950-73030193(+)$1	1	132	147	11.4565
(((((......))))	chr6:26988102-26988306(+)$1	1	136	151	11.2810
((.((......))))	chr2:30845332-30845548(+)$1	1	193	208	9.2468
)((((......))))	chr7:139025391-139025611(+)$1	1	85	100	11.3431
(((((......))))	chr17:73029939-73030150(+)$1	1	143	158	11.4565
(((((......))))	chr16:70812825-70813029(-)$1	1	126	141	9.3693
(((((......))))	chr5:180618572-180618802(-)$1	1	176	191	9.3693
(((((......))))	chr7:149286054-149286300(-)$1	1	155	170	9.3693
.((((......))))	chr7:139025411-139025632(+)$1	1	132	147	10.5933
(((((......))))	chr17:73031163-73031377(+)$1	1	3	18	11.2810
(((((......))))	chrM:12060-12278(+)$1	1	181	196	11.2810
(((((......))))	chrY:6931104-6931311(+)$1	1	33	48	11.2810
.((((......))))	chr17:19411437-19411648(+)$1	1	155	170	11.5295
.((((......))))	chr2:141612149-141612359(-)$1	1	82	97	11.5209
.((((......))))	chr2:141612163-141612367(-)$1	1	90	105	11.5209
.((((......))))	chr14:58706495-58706737(-)$1	1	90	105	11.3306
(((((......))))	chr16:3207310-3207517(-)$1	1	141	156	11.1932
((.((......))))	chr12:1948172-1948379(-)$1	1	23	38	9.8859
.((((......))))	chr15:79152863-79153074(+)$1	1	78	93	11.3306
)))(((......)))	chr8:69629431-69629666(+)$1	1	57	72	8.8044
(((.(......).))	chr5:180692576-180692792(+)$1	1	171	186	10.6603
(((((......))))	chr17:73031151-73031360(+)$1	1	15	30	11.2810
(..((......))..	chr3:127793875-127794123(-)$1	1	137	152	8.7974
.((((......))))	chr17:19411448-19411681(+)$1	1	144	159	11.5295
(((((......))))	chr5:177019281-177019496(+)$1	1	50	65	11.2810
(((((......))))	chrM:12055-12260(+)$1	1	186	201	9.3693
(..((......))))	chr6:28806132-28806336(-)$1	1	160	175	9.3081
.((((......))))	chr2:141612167-141612372(-)$1	1	95	110	11.5209
..(((......))).	chr17:8124078-8124301(-)$1	1	151	166	9.8299
.((((......))))	chr5:139345229-139345432(-)$1	1	145	160	10.5933
(((((......))))	chr1:17199038-17199256(+)$1	1	14	29	9.3693
(((((......))).	chr11:66115555-66115768(+)$1	1	24	39	10.0511
.((((......))))	chr17:8126037-8126247(-)$1	1	5	20	10.5933
(((((......))))	chr19:1648854-1649094(-)$1	1	45	60	11.2810
(((((......))))	chr19:9982750-9982961(-)$1	1	12	27	11.2810
.((((......))))	chr16:3241458-3241680(+)$1	1	144	159	11.5295
.((((......))))	chr15:79152874-79153088(+)$1	1	67	82	11.3306
(((((......))))	chr1:17199031-17199238(+)$1	1	21	36	9.3693

#PSSM
e : 0.34	f : 0.11	: : 0.09	d : 0.09	$ : 0.07	" : 0.07	= : 0.05	[ : 0.05	g : 0.03	c : 0.01	b : 0.01	
d : 0.44	e : 0.32	f : 0.11	! : 0.05	= : 0.01	c : 0.01	" : 0.01	
d : 0.40	e : 0.30	f : 0.11	! : 0.05	[ : 0.05	c : 0.03	= : 0.01	
d : 0.36	e : 0.26	b : 0.11	f : 0.11	[ : 0.05	c : 0.05	= : 0.01	
d : 0.36	e : 0.26	b : 0.11	f : 0.11	a : 0.05	c : 0.05	= : 0.01	
o : 0.98	c : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.36	e : 0.26	b : 0.11	f : 0.11	a : 0.05	c : 0.03	= : 0.01	o : 0.01	
d : 0.36	e : 0.26	b : 0.11	f : 0.11	] : 0.05	c : 0.05	= : 0.01	
d : 0.42	e : 0.30	f : 0.11	c : 0.07	g : 0.03	= : 0.01	2 : 0.01	
d : 0.42	e : 0.30	f : 0.11	g : 0.03	c : 0.03	= : 0.01	2 : 0.01	3 : 0.01	] : 0.01	

#score	554.0686043206387
#seq	52
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF923ZLX_AKAP8L_transcript_m1_run1.txt

#BEAR
b[ccc[ccc[gggggggmmmmggggggg]ccc22ccc]bb	chr19:2269856-2270117(+)$1	261	189	229	12.4081
ccc[ccc[eeeee[cccmmmmccc]eeeee]cccccc]gg	chr17:46137487-46137727(+)$1	240	85	125	13.0671
c####ffffff[aacccmmmmccc]a]a]ffffff333cc	chr7:100171234-100171591(-)$1	357	44	84	13.7286
iiiiiieeeee"""ddddllldddd333eeeee22iiiii	chr3:52567352-52567599(-)$1	247	141	181	13.9660
####dddd!!a[cccooooooccc]a333dddd333ccc]	chr21:45739343-45739625(+)$1	282	73	113	15.1148
e[ggggggg[ccc[ccclllcccccc22ggggggg]eeee	chr7:101459384-101459655(+)$1	271	55	95	14.4238
eeee:============aooooooa]============::	chr9:140445571-140445831(+)$1	260	126	166	13.1984
ggg[ggggggg!!ddddmmmmddddggggggg22gggggg	chr1:1179037-1179312(-)$1	275	201	241	13.1348
dd[ccc[ccc[a[ddddmmmmdddda]cccccc]ddddee	chr9:140073916-140074162(-)$1	246	155	195	11.6338
f"""ffffffccc[a[annnnna]a]ccc]ffffff333f	chr10:133766044-133766301(+)$1	257	59	99	12.7979
c[ccc[ccc!!eeeeeooooooeeeee]cccccc]ccc]b	chr1:1194477-1194776(-)$1	299	148	188	13.2885
b[aiiiiiiiii[bboooooobb]iiiiiiiii]a]bb]a	chr16:89023789-89024029(-)$1	240	103	143	14.8461
e==========[ddddnnnnndddd333==========]e	chr11:557749-558004(+)$1	255	188	228	16.4408
&&&&ggggggg!!ddddmmmmdddd4444ggggggg4444	chr7:1929329-1929608(-)$1	279	209	249	12.1360
"ffffff[bb[ccccccmmmmccc]ccc]bb]ffffff33	chr21:46930697-46930940(-)$1	243	112	152	11.4877
dddbb[ccc[ccc[aooooooa]cccccc]bb22dddd22	chr16:1425932-1426207(-)$1	275	32	72	12.5728
=[ccc[eeeee[a!!bbmmmmbb22a]eeeee]ccc====	chr16:88568127-88568400(+)$1	273	80	120	12.9163
dddd[iiiiiiiii[bbnnnnnbb22iiiiiiiii333dd	chr1:26232505-26232755(-)$1	250	19	59	13.0878
f============[cccnnnnnccc============:::	chr17:76124235-76124515(-)$1	280	156	196	14.7219
:===========!!cccooooooccc]===========JJ	chr6:155055175-155055503(+)$1	328	22	62	14.9535
:=========="""ccclllccc55555==========gg	chr16:447337-447595(+)$1	258	193	233	13.5198
cc[ccc[a[gggggggnnnnnggggggg]a]ccc]ccc22	chr21:46859949-46860207(+)$1	258	15	55	13.0619
===========zzzzzzzzzzzzzzzzz===========]	chr13:113539355-113539707(+)$1	352	92	132	12.9663
e!!ccc[eeeeecccooooooccc]eeeee]ccc22eeee	chr7:1893061-1893320(-)$1	259	75	115	13.3381
"""ccc"""eeeee[bblllbb]eeeeeccc=========	chr17:17719359-17719603(-)$1	244	62	102	12.9890
c!!dddd[a!!a[cccnnnnnccc]a4444a22dddd]cc	chr17:80915762-80916041(-)$1	279	39	79	12.9825
dd"""bbeeeeecccooooooccc]eeeee]bb22ddddc	chr3:179065703-179066008(+)$1	305	45	85	11.9182
d[eeeee"""eeeeeooooooeeeee333eeeee]dddd:	chr12:131522486-131522774(+)$1	288	146	186	11.4282
(===========!!aqqqqqqqqa22===========fff	chr22:50023652-50023973(-)$1	321	160	200	13.1394
bb22============dddd]eeeee]a]iiiiiiiii22	chr17:80107628-80107904(-)$1	276	166	206	10.3041
======[eeeee[bb[aooooooa]bb]eeeee=======	chr16:845040-845284(+)$1	244	155	195	14.2824
==========="""cccnnnnnccc===========]eee	chr1:47696152-47696399(-)$1	247	47	87	17.0535
b[cccbb!!ccc[cccooooooccc]ccc22bb]ccc]bb	chr16:28878125-28878389(+)$1	264	72	112	13.3986
eeeee####ccc[cccooooooccc333ccceeeeeeeee	chr18:75696602-75696917(-)$1	315	198	238	13.5348
ggggg[ggggggg[cccrrrrrrrrrccc]ggggggg]gg	chr19:55671014-55671303(+)$1	289	98	138	12.7618
i[bb!!ffffff!!bbammmma]bb333ffffff333bb]	chr2:97467886-97468165(+)$1	279	139	179	12.8628
"""ccc[==========ppppppp==========]ccccc	chr11:819988-820235(+)$1	247	80	120	12.1238
c[ccc[a"""ccc[annnnna]ccc333a]ccc22ccc]b	chr16:88583656-88583964(+)$1	308	22	62	14.1995
d$$$$$ggggggg[aooooooa]ggggggg333dddd666	chr20:35464238-35464549(-)$1	311	117	157	12.1882
=========[ccc[ccclllccc22ccc22==========	chr16:85683509-85683756(+)$1	247	47	87	16.4267
c[bb!!eeeee"""bbnnnnnbb333eeeee]bb]ccc22	chr11:65072023-65072292(+)$1	269	221	261	12.3038
:============[cccpppppppccc]============	chr17:18965306-18965515(+)$1	209	106	146	12.3465
=================mmmm==================:	chr4:8610257-8610513(+)$1	256	106	146	16.7730
c[bb[eeeee[a!!cccmmmmccc22aeeeee]bb]ccc2	chr2:178077716-178077963(+)$1	247	89	129	12.8698
eeee[===========oooooo===========eeeee22	chr19:877462-877733(-)$1	271	182	222	15.7084
c[iiiiiiiii[ddddooooooddddiiiiiiiii]ccc:	chr1:46767535-46767853(-)$1	318	112	152	14.9928
ca[gggggggccc[a[ammmma]a]ccc]ggggggg]a==	chr1:54871386-54871645(-)$1	259	45	85	14.8904
e[ccc[bb[eeeeeddddllldddd4444eeeeebbccc]	chr16:3508191-3508447(+)$1	256	143	183	11.7210
iiiiiccc[ccc"""bbmmmmbb22ccc333ccc22iiii	chr1:1283761-1283998(-)$1	237	138	178	13.4147
ee!!bb####ccc[ccclllccc]ccc333bb22eeeee]	chr1:11851077-11851350(-)$1	273	46	86	12.8828
c"""ccc[ccc[ccc[ammmma]cccccc]ccc333ccch	chrX:39955212-39955468(-)$1	256	97	137	14.7229
a"""a[bb[a####ddddllldddd333a]bb]a]a]===	chr19:50436985-50437259(+)$1	274	110	150	14.2200
fff!!ffffff"""cccmmmmccc333ffffff4444fff	chr17:3848133-3848415(-)$1	282	203	243	13.2800
!!===========[aooooooa]===========22bb::	chr2:47403145-47403410(-)$1	265	56	96	15.9331
g[==========!!cccmmmmccc4444==========33	chr22:19702971-19703211(+)$1	240	89	129	18.9888

#otherMatches

#Seq PSSM
GGGGAGUCGGGGGAGGCGUGUGUCUUUUGCGGGGUUCGCG	chr19:2269856-2270117(+)$1	261	189	229	12.4081
GGGUGGGGAGGGACGGUGUUAACUCUUUCUGCUCCUUGCA	chr17:46137487-46137727(+)$1	240	85	125	13.0671
gggagcccggcgggggcACGCGCCACGUGGCCGGGAGACG	chr7:100171234-100171591(-)$1	357	44	84	13.7286
GCCCCAGGGUGCCGCUCCUCCGGGGAAACACCCAGUGGGG	chr3:52567352-52567599(-)$1	247	141	181	13.9660
GAAGAUCGAGGGAGGAAGGGGCCUGCGGGUGGUACAGGAG	chr21:45739343-45739625(+)$1	282	73	113	15.1148
gggggccccgggcuggcccagccgccggggggcccgcggc	chr7:101459384-101459655(+)$1	271	55	95	14.4238
CAGGAGGGCUCAGUGCGCAAGCCGGACGUGCUGGGUCCAA	chr9:140445571-140445831(+)$1	260	126	166	13.1984
GGGAGACCCUCCUGGGUGUGGACUCGAGGGUCAGUCCUGC	chr1:1179037-1179312(-)$1	275	201	241	13.1348
UGUGCCCAGAGGAUGGUAUUGGCCACGUUUGGCUCACUUC	chr9:140073916-140074162(-)$1	246	155	195	11.6338
GUCUUAGUGACUUGCGGGUGUGCGGGGGGUUCACUGUCUU	chr10:133766044-133766301(+)$1	257	59	99	12.7979
ggcaugcagacacgcacauacaugcguccugauggcauac	chr1:1194477-1194776(-)$1	299	148	188	13.2885
GUCUGGGGGUGGAGGGACUAGCUAUCACCUUUGCGUCGUC	chr16:89023789-89024029(-)$1	240	103	143	14.8461
CAGCUGCAGGAGGCAGGACUUCUGCAAGUUCUGCAGCUCG	chr11:557749-558004(+)$1	255	188	228	16.4408
CAUGGCAGGCUCAGCUGACAGCAGCAUCCGGCCUGCAGAG	chr7:1929329-1929608(-)$1	279	209	249	12.1360
GCCCCUGGGCAUGUCCUGCCAGGGAACAAGCGUGGGGGAG	chr21:46930697-46930940(-)$1	243	112	152	11.4877
CUUGGACUGAGGGAGGAGGAGCGCCCCAGCCCUGGAGGGA	chr16:1425932-1426207(-)$1	275	32	72	12.5728
CCGCUGGUGCUGGUGAUGGAGGUAGUGGGCGUGGGUGCAG	chr16:88568127-88568400(+)$1	273	80	120	12.9163
GGGUCGCUCCGCUUUGUGUGUGGCUCGGGCGGAGCCUCGC	chr1:26232505-26232755(-)$1	250	19	59	13.0878
UGGCCCCAGAGUUGCAGCCGCUCUGGGCUCUGGGGCCAGG	chr17:76124235-76124515(-)$1	280	156	196	14.7219
UGGGGGAGGGGUGUUUCUCCUCUGGGUGCCCCUCCCCCGG	chr6:155055175-155055503(+)$1	328	22	62	14.9535
CCCCAGGCUGCAGGCGCCCGGCGAGUUGGCAGCCUGGGCG	chr16:447337-447595(+)$1	258	193	233	13.5198
CCGCAUGGGCGGAGGGGCCGGUCCUCCGAUGAUGGGGCAA	chr21:46859949-46860207(+)$1	258	15	55	13.0619
caugcacguguacacauaccacagacacgcgugugcaugc	chr13:113539355-113539707(+)$1	352	92	132	12.9663
UGAUCAGUCUGCUGUGGUCAGGCAGGCAGGGUGGGGGCUG	chr7:1893061-1893320(-)$1	259	75	115	13.3381
CGGGCCUUGCAUUUUCUGACAGUGAGUGGGUUGGGGGGCU	chr17:17719359-17719603(-)$1	244	62	102	12.9890
CAGGCAGACAGCGAUGGGGCACGUGGGGAGGGGCUGCGGU	chr17:80915762-80916041(-)$1	279	39	79	12.9825
GCGAACGGGGCUGGCGGCCGAGUCGAGCCCACGGAGCCCA	chr3:179065703-179066008(+)$1	305	45	85	11.9182
acugggucuuacucacuacacugGGUCUCACUCACUGCAU	chr12:131522486-131522774(+)$1	288	146	186	11.4282
GAGGUCUCCUCUGGGGACUGAAGCAGGGAGGAGGCCUGGC	chr22:50023652-50023973(-)$1	321	160	200	13.1394
GGUUCCGGGUGUGCGCCAGGUUCUGGGUGUGCGCCUGGUU	chr17:80107628-80107904(-)$1	276	166	206	10.3041
CCCUCGACUGGCUGGCCUUCGAUGACCUGCUGGCGGGGGC	chr16:845040-845284(+)$1	244	155	195	14.2824
UGGCGGGAGAACAAAGCAGCGGGUUUUUUUCCGCUACAGC	chr1:47696152-47696399(-)$1	247	47	87	17.0535
AGCCCCUGACCCAGCCGGAGUGGGCCGGGGAGGAGGGGUG	chr16:28878125-28878389(+)$1	264	72	112	13.3986
AAUGAUAGUAACAAGCCUUCCUGCUCCAGUUUCAUUGGAU	chr18:75696602-75696917(-)$1	315	198	238	13.5348
ucuggacuccugggucugagggaggaggggcugggggccu	chr19:55671014-55671303(+)$1	289	98	138	12.7618
UUGCUCCUGGCCCAGCCAAGUGAGCACCGGCCAGCCUGCU	chr2:97467886-97468165(+)$1	279	139	179	12.8628
UGGCCUGGGGGCGGGGCCUGGUUUGUUUUGCUCCGAGGGU	chr11:819988-820235(+)$1	247	80	120	12.1238
ugguuggagggcuggguggaugaguggguggauggacaga	chr16:88583656-88583964(+)$1	308	22	62	14.1995
GGAGAAGCUCAGAGGAAUCUGCGUUUGGGCAUAUAGUGGA	chr20:35464238-35464549(-)$1	311	117	157	12.1882
GGUCCCAGUGGGAAUCCCUGGGAGCUCCGGACUGGGACCC	chr16:85683509-85683756(+)$1	247	47	87	16.4267
GGCACAUGUUCAGGGCAGCAGGCAUGGAGCACUGGCUGGA	chr11:65072023-65072292(+)$1	269	221	261	12.3038
ugagagggagagaacgcggucugagugguUUUUCCUUCUU	chr17:18965306-18965515(+)$1	209	106	146	12.3465
UGCACGUGUGUGCGUGUGCAUGCAUGUGCACACGUGCAUA	chr4:8610257-8610513(+)$1	256	106	146	16.7730
CCUUGGAGGCGCGGCUUGGUCGGGGAGGCCUCGGGAGGGA	chr2:178077716-178077963(+)$1	247	89	129	12.8698
GGGUUCGUCUUGUUGAGCGAGGUCAGUGGGGUGGCUCACA	chr19:877462-877733(-)$1	271	182	222	15.7084
CGGGGCUGUGGGUUGGGGACCGCUGGCCGCGGCCUGGCCG	chr1:46767535-46767853(-)$1	318	112	152	14.9928
ccgcgccgccgccgggcUgcgggcgggcgggcggugggag	chr1:54871386-54871645(-)$1	259	45	85	14.8904
ggcgcACGGUCCUCCCGGGAGCCGGUUUCGGGGACGGCGG	chr16:3508191-3508447(+)$1	256	143	183	11.7210
UGUCUGCUAGGGUUUGCAGAAGCUUCCCGAGGGUCAAGAC	chr1:1283761-1283998(-)$1	237	138	178	13.4147
AGCCCACCGUAGUGGAUCCCGUCAGCUUCAUGUUCUGGAA	chr1:11851077-11851350(-)$1	273	46	86	12.8828
CGGGGAGGGCGAggcgccgcggggcccgcgcucggagccg	chrX:39955212-39955468(-)$1	256	97	137	14.7229
AAGGUGUUGGAGAGGGGCUGUGUCUGGGUGAGGGAUGGCG	chr19:50436985-50437259(+)$1	274	110	150	14.2200
CUUCUGGGGGCGGGGCCAAGAGGCGGAGCCCCCUCCUAGG	chr17:3848133-3848415(-)$1	282	203	243	13.2800
ACAGUUCCCGAGGUGGUGAAGCUCCUCGGGGGCUUGGCUG	chr2:47403145-47403410(-)$1	265	56	96	15.9331
GGGGGCUGGGGAAAGCCUGCUGGUGUCCUCUCUGGCUUGA	chr22:19702971-19703211(+)$1	240	89	129	18.9888

#DB
(.(((.(((.(((((((....))))))).)))..))).))	chr19:2269856-2270117(+)$1	1	189	229	12.4081
(((.(((.(((((.(((....))).))))).)))))).))	chr17:46137487-46137727(+)$1	1	85	125	13.0671
(....((((((.(((((....))).).).))))))...))	chr7:100171234-100171591(-)$1	1	44	84	13.7286
(((((((((((...((((...))))...)))))..)))))	chr3:52567352-52567599(-)$1	1	141	181	13.9660
....((((..(.(((......))).)...))))...))).	chr21:45739343-45739625(+)$1	1	73	113	15.1148
(.(((((((.(((.(((...))))))..))))))).))))	chr7:101459384-101459655(+)$1	1	55	95	14.4238
)))).(((((((((((((......).))))))))))))..	chr9:140445571-140445831(+)$1	1	126	166	13.1984
(((.(((((((..((((....)))))))))))..))))))	chr1:1179037-1179312(-)$1	1	201	241	13.1348
((.(((.(((.(.((((....))))).)))))).))))))	chr9:140073916-140074162(-)$1	1	155	195	11.6338
(...(((((((((.(.(.....).).))).))))))...)	chr10:133766044-133766301(+)$1	1	59	99	12.7979
(.(((.(((..(((((......))))).)))))).))).)	chr1:1194477-1194776(-)$1	1	148	188	13.2885
(.((((((((((.((......)).))))))))).).)).)	chr16:89023789-89024029(-)$1	1	103	143	14.8461
(((((((((((.((((.....))))...)))))))))).)	chr11:557749-558004(+)$1	1	188	228	16.4408
....(((((((..((((....))))....)))))))....	chr7:1929329-1929608(-)$1	1	209	249	12.1360
.((((((.((.((((((....))).))).)).))))))..	chr21:46930697-46930940(-)$1	1	112	152	11.4877
(((((.(((.(((.(......).)))))).))..))))..	chr16:1425932-1426207(-)$1	1	32	72	12.5728
(.(((.(((((.(..((....))..).))))).)))))))	chr16:88568127-88568400(+)$1	1	80	120	12.9163
((((.(((((((((.((.....))..)))))))))...))	chr1:26232505-26232755(-)$1	1	19	59	13.0878
)((((((((((((.(((.....)))))))))))))))...	chr17:76124235-76124515(-)$1	1	156	196	14.7219
.(((((((((((..(((......))).)))))))))))((	chr6:155055175-155055503(+)$1	1	22	62	14.9535
.((((((((((...(((...))).....))))))))))((	chr16:447337-447595(+)$1	1	193	233	13.5198
((.(((.(.(((((((.....))))))).).))).)))..	chr21:46859949-46860207(+)$1	1	15	55	13.0619
(((((((((((.................))))))))))).	chr13:113539355-113539707(+)$1	1	92	132	12.9663
(..(((.((((((((......))).))))).)))..))))	chr7:1893061-1893320(-)$1	1	75	115	13.3381
...(((...(((((.((...)).)))))))))))))))))	chr17:17719359-17719603(-)$1	1	62	102	12.9890
(..((((.(..(.(((.....))).)....)..)))).))	chr17:80915762-80916041(-)$1	1	39	79	12.9825
((...((((((((((......))).))))).))..)))))	chr3:179065703-179066008(+)$1	1	45	85	11.9182
(.(((((...(((((......)))))...))))).)))).	chr12:131522486-131522774(+)$1	1	146	186	11.4282
.(((((((((((..(........)..))))))))))))))	chr22:50023652-50023973(-)$1	1	160	200	13.1394
))..)))))))))))))))).))))).).)))))))))..	chr17:80107628-80107904(-)$1	1	166	206	10.3041
((((((.(((((.((.(......).)).))))))))))))	chr16:845040-845284(+)$1	1	155	195	14.2824
(((((((((((...(((.....)))))))))))))).)))	chr1:47696152-47696399(-)$1	1	47	87	17.0535
(.(((((..(((.(((......))).)))..)).))).))	chr16:28878125-28878389(+)$1	1	72	112	13.3986
(((((....(((.(((......)))...))))))))((((	chr18:75696602-75696917(-)$1	1	198	238	13.5348
(((((.(((((((.(((.........))).))))))).))	chr19:55671014-55671303(+)$1	1	98	138	12.7618
(.((..((((((..(((....).))...))))))...)).	chr2:97467886-97468165(+)$1	1	139	179	12.8628
...(((.((((((((((.......)))))))))).)))))	chr11:819988-820235(+)$1	1	80	120	12.1238
(.(((.(...(((.(.....).)))...).)))..))).)	chr16:88583656-88583964(+)$1	1	22	62	14.1995
(.....(((((((.(......).)))))))...))))...	chr20:35464238-35464549(-)$1	1	117	157	12.1882
(((((((((.(((.(((...)))..)))..))))))))))	chr16:85683509-85683756(+)$1	1	47	87	16.4267
(.((..(((((...((.....))...))))).)).)))..	chr11:65072023-65072292(+)$1	1	221	261	12.3038
.((((((((((((.(((.......))).))))))))))))	chr17:18965306-18965515(+)$1	1	106	146	12.3465
(((((((((((((((((....)))))))))))))))))).	chr4:8610257-8610513(+)$1	1	106	146	16.7730
(.((.(((((.(..(((....)))..)))))).)).))).	chr2:178077716-178077963(+)$1	1	89	129	12.8698
((((.(((((((((((......))))))))))))))))..	chr19:877462-877733(-)$1	1	182	222	15.7084
(.(((((((((.((((......))))))))))))).))).	chr1:46767535-46767853(-)$1	1	112	152	14.9928
)(.((((((((((.(.(....).).))).))))))).)((	chr1:54871386-54871645(-)$1	1	45	85	14.8904
(.(((.((.(((((((((...))))....)))))))))).	chr16:3508191-3508447(+)$1	1	143	183	11.7210
((((((((.(((...((....))..)))...)))..))))	chr1:1283761-1283998(-)$1	1	138	178	13.4147
((..((....(((.(((...))).)))...))..))))).	chr1:11851077-11851350(-)$1	1	46	86	12.8828
(...(((.(((.(((.(....).)))))).)))...)))(	chrX:39955212-39955468(-)$1	1	97	137	14.7229
(...(.((.(....((((...))))...).)).).).)))	chr19:50436985-50437259(+)$1	1	110	150	14.2200
(((..((((((...(((....)))...))))))....)))	chr17:3848133-3848415(-)$1	1	203	243	13.2800
..(((((((((((.(......).)))))))))))..))..	chr2:47403145-47403410(-)$1	1	56	96	15.9331
(.((((((((((..(((....)))....))))))))))..	chr22:19702971-19703211(+)$1	1	89	129	18.9888

#PSSM
c : 0.20	e : 0.14	d : 0.10	= : 0.10	b : 0.07	i : 0.05	g : 0.05	f : 0.05	" : 0.05	: : 0.05	# : 0.01	& : 0.01	( : 0.01	a : 0.01	! : 0.01	
[ : 0.25	= : 0.20	" : 0.09	e : 0.07	d : 0.07	! : 0.05	c : 0.03	# : 0.03	i : 0.03	g : 0.03	f : 0.03	& : 0.01	b : 0.01	$ : 0.01	a : 0.01	
= : 0.23	c : 0.12	" : 0.10	e : 0.07	i : 0.05	g : 0.05	[ : 0.05	! : 0.05	b : 0.05	# : 0.03	f : 0.03	d : 0.03	a : 0.01	& : 0.01	2 : 0.01	$ : 0.01	
= : 0.23	c : 0.20	i : 0.07	e : 0.07	" : 0.07	b : 0.07	g : 0.05	[ : 0.03	# : 0.03	d : 0.03	! : 0.03	& : 0.01	f : 0.01	2 : 0.01	$ : 0.01	
= : 0.25	c : 0.23	g : 0.09	i : 0.07	[ : 0.05	! : 0.05	d : 0.03	f : 0.03	b : 0.03	e : 0.03	# : 0.01	: : 0.01	" : 0.01	$ : 0.01	a : 0.01	
= : 0.29	[ : 0.14	c : 0.14	f : 0.07	i : 0.07	g : 0.07	b : 0.05	d : 0.03	e : 0.03	! : 0.03	# : 0.01	$ : 0.01	
= : 0.27	c : 0.10	g : 0.10	f : 0.09	e : 0.09	[ : 0.09	b : 0.07	i : 0.05	d : 0.03	# : 0.03	" : 0.01	a : 0.01	
= : 0.29	e : 0.12	g : 0.10	c : 0.09	[ : 0.07	f : 0.07	i : 0.05	" : 0.05	# : 0.03	b : 0.03	d : 0.01	a : 0.01	! : 0.01	
= : 0.29	e : 0.14	g : 0.10	c : 0.09	f : 0.07	[ : 0.07	i : 0.05	" : 0.05	! : 0.03	# : 0.03	b : 0.01	a : 0.01	
= : 0.27	e : 0.18	g : 0.10	c : 0.09	[ : 0.07	f : 0.07	! : 0.05	i : 0.05	" : 0.03	b : 0.01	# : 0.01	a : 0.01	
= : 0.27	c : 0.20	e : 0.18	g : 0.10	f : 0.05	[ : 0.05	i : 0.05	! : 0.03	a : 0.01	# : 0.01	
c : 0.20	= : 0.20	e : 0.14	[ : 0.10	" : 0.09	g : 0.07	a : 0.05	! : 0.03	i : 0.03	z : 0.01	f : 0.01	# : 0.01	
c : 0.21	= : 0.14	! : 0.12	" : 0.10	[ : 0.10	e : 0.09	g : 0.07	a : 0.03	d : 0.03	i : 0.01	z : 0.01	# : 0.01	
[ : 0.23	c : 0.14	" : 0.10	! : 0.10	= : 0.09	d : 0.09	e : 0.07	g : 0.03	b : 0.03	a : 0.01	i : 0.01	z : 0.01	# : 0.01	
c : 0.40	d : 0.14	a : 0.12	= : 0.09	b : 0.07	g : 0.03	e : 0.03	[ : 0.03	! : 0.01	z : 0.01	" : 0.01	
c : 0.32	d : 0.14	o : 0.14	b : 0.10	= : 0.09	[ : 0.07	g : 0.03	e : 0.01	z : 0.01	q : 0.01	n : 0.01	
c : 0.27	o : 0.23	d : 0.12	a : 0.09	n : 0.09	b : 0.07	= : 0.05	g : 0.01	z : 0.01	q : 0.01	
m : 0.29	o : 0.27	n : 0.16	l : 0.09	d : 0.07	p : 0.03	a : 0.01	z : 0.01	q : 0.01	r : 0.01	
m : 0.29	o : 0.29	n : 0.16	l : 0.14	p : 0.03	z : 0.01	q : 0.01	d : 0.01	r : 0.01	
m : 0.29	o : 0.29	n : 0.16	l : 0.14	p : 0.03	z : 0.01	q : 0.01	d : 0.01	r : 0.01	
m : 0.29	o : 0.29	n : 0.14	c : 0.07	l : 0.05	p : 0.03	z : 0.01	b : 0.01	q : 0.01	] : 0.01	r : 0.01	a : 0.01	
c : 0.25	o : 0.14	d : 0.12	a : 0.10	b : 0.09	n : 0.07	g : 0.03	e : 0.03	p : 0.03	z : 0.01	q : 0.01	r : 0.01	] : 0.01	= : 0.01	
c : 0.34	d : 0.14	] : 0.12	b : 0.09	o : 0.05	e : 0.05	g : 0.03	p : 0.03	= : 0.03	a : 0.01	z : 0.01	q : 0.01	r : 0.01	
c : 0.34	d : 0.14	e : 0.07	g : 0.05	] : 0.05	2 : 0.05	a : 0.05	= : 0.05	b : 0.03	p : 0.03	o : 0.01	5 : 0.01	z : 0.01	r : 0.01	3 : 0.01	
c : 0.20	] : 0.16	d : 0.14	2 : 0.10	e : 0.07	= : 0.07	g : 0.05	a : 0.03	3 : 0.03	i : 0.01	5 : 0.01	z : 0.01	r : 0.01	b : 0.01	4 : 0.01	
c : 0.18	3 : 0.14	e : 0.12	= : 0.10	a : 0.09	g : 0.07	] : 0.05	4 : 0.05	2 : 0.05	i : 0.01	5 : 0.01	z : 0.01	b : 0.01	r : 0.01	d : 0.01	
c : 0.20	3 : 0.16	= : 0.14	e : 0.10	] : 0.09	g : 0.07	4 : 0.07	i : 0.05	2 : 0.01	5 : 0.01	z : 0.01	b : 0.01	a : 0.01	
c : 0.18	3 : 0.16	= : 0.16	e : 0.12	g : 0.07	4 : 0.07	] : 0.05	i : 0.05	a : 0.03	2 : 0.01	5 : 0.01	z : 0.01	f : 0.01	
= : 0.25	c : 0.16	e : 0.14	] : 0.10	3 : 0.07	g : 0.05	i : 0.05	4 : 0.05	f : 0.03	a : 0.03	2 : 0.01	
= : 0.25	e : 0.18	] : 0.10	c : 0.09	g : 0.09	i : 0.07	f : 0.05	2 : 0.03	3 : 0.03	d : 0.01	b : 0.01	a : 0.01	4 : 0.01	
= : 0.27	c : 0.12	e : 0.12	g : 0.09	] : 0.07	f : 0.07	i : 0.07	b : 0.07	3 : 0.03	d : 0.01	a : 0.01	2 : 0.01	
= : 0.29	c : 0.16	e : 0.12	g : 0.09	b : 0.09	f : 0.07	i : 0.07	] : 0.03	d : 0.01	2 : 0.01	3 : 0.01	
= : 0.29	c : 0.14	2 : 0.09	f : 0.09	e : 0.09	g : 0.07	i : 0.07	] : 0.05	b : 0.05	d : 0.01	3 : 0.01	
= : 0.29	2 : 0.12	c : 0.10	f : 0.07	g : 0.07	e : 0.07	] : 0.05	i : 0.05	3 : 0.03	d : 0.03	b : 0.03	a : 0.01	4 : 0.01	
= : 0.25	2 : 0.10	] : 0.10	g : 0.09	c : 0.07	d : 0.07	f : 0.05	3 : 0.05	i : 0.05	e : 0.05	b : 0.03	a : 0.01	4 : 0.01	
= : 0.25	c : 0.16	d : 0.10	3 : 0.09	] : 0.07	g : 0.07	2 : 0.05	e : 0.05	i : 0.03	f : 0.03	b : 0.01	a : 0.01	4 : 0.01	
= : 0.25	c : 0.23	d : 0.10	e : 0.09	3 : 0.07	i : 0.05	] : 0.05	g : 0.03	b : 0.03	4 : 0.03	f : 0.01	
= : 0.23	c : 0.18	e : 0.10	] : 0.09	d : 0.07	3 : 0.05	i : 0.05	b : 0.05	f : 0.05	g : 0.01	4 : 0.01	: : 0.01	6 : 0.01	a : 0.01	
= : 0.16	c : 0.14	e : 0.10	2 : 0.09	g : 0.07	] : 0.07	b : 0.05	: : 0.05	3 : 0.05	d : 0.05	i : 0.03	f : 0.03	4 : 0.01	J : 0.01	6 : 0.01	
= : 0.12	e : 0.10	: : 0.10	2 : 0.10	] : 0.09	b : 0.07	g : 0.07	c : 0.07	f : 0.05	i : 0.03	3 : 0.03	a : 0.01	4 : 0.01	d : 0.01	J : 0.01	6 : 0.01	h : 0.01	

#score	749.4545954704689
#seq	55
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_transcript_m2_run1.txt

#BEAR
[cccvvvvvvvvvvvvvc	chr11:2150557-2150760(-)$1	203	10	28	22.1285
:cccuuuuuuuuuuuucc	chr4:7029102-7029373(+)$1	271	55	73	21.7909
eeeeuuuuuuuuuuuuee	chr21:47613936-47614214(-)$1	278	93	111	22.2116
ddddwwwwwwwwwwwwww	chr7:55271725-55271973(+)$1	248	21	39	20.9299
eeeevvvvvvvvvvvvve	chr11:2159456-2159659(-)$1	203	71	89	21.7277
c[bbyyyyyyyyyyyyyy	chr17:80785674-80785983(+)$1	309	105	123	20.4078
dddduuuuuuuuuuuudd	chr7:157800482-157800730(-)$1	248	15	33	22.1418
ffffuuuuuuuuuuuuff	chr22:47400712-47400991(+)$1	279	33	51	21.9074
ffffuuuuuuuuuuuuff	chr20:35236183-35236448(+)$1	265	50	68	21.9074
:cccuuuuuuuuuuuucc	chr18:12478127-12478384(-)$1	257	112	130	21.7909
!!bbvvvvvvvvvvvvvb	chr22:47399420-47399675(+)$1	255	30	48	21.2996
ddddyyyyyyyyyyyyyy	chr13:113766170-113766412(+)$1	242	181	199	20.7592
!cccuuuuuuuuuuuucc	chr6:158051716-158052012(+)$1	296	48	66	22.8162
cccvvvvvvvvvvvvvcc	chr16:88087905-88088206(+)$1	301	200	218	21.5725
ggggwwwwwwwwwwwwww	chr21:47612223-47612479(-)$1	256	51	69	21.0241
eeeevvvvvvvvvvvvve	chr10:128813071-128813349(+)$1	278	88	106	21.7277
ddddtttttttttttddd	chr17:80218135-80218354(-)$1	219	74	92	20.6007
eeeeetttttttttttee	chr11:2152667-2152870(-)$1	203	110	128	20.7485
ggggwwwwwwwwwwwwww	chr19:54062961-54063176(+)$1	215	100	118	21.0241
ggggvvvvvvvvvvvvvg	chr2:101458515-101458743(+)$1	228	129	147	21.7712
ccccuuuuuuuuuuuucc	chr15:67334813-67335055(-)$1	242	128	146	22.7373
gggggtttttttttttgg	chr14:104343559-104343854(-)$1	295	79	97	20.6450
:ccctttttttttttccc	chr13:113539897-113540179(+)$1	282	39	57	20.4030
gggggtttttttttttgg	chr12:131441385-131441678(+)$1	293	87	105	20.6450
eeeeetttttttttttee	chr11:2152672-2152874(-)$1	202	114	132	20.7485
$cccuuuuuuuuuuuucc	chr17:4618848-4619126(+)$1	278	208	226	22.5156
""bbuuuuuuuuuuuubb	chr7:1927109-1927420(-)$1	311	168	186	21.4810
c[bbuuuuuuuuuuuubb	chr17:80917373-80917638(-)$1	265	58	76	21.6244
=====ttttttttttt==	chr21:46904518-46904745(+)$1	227	134	152	20.7615
gggguuuuuuuuuuuugg	chr17:76889589-76889865(-)$1	276	105	123	22.2707
ddddwwwwwwwwwwwwww	chr3:126258695-126258940(+)$1	245	84	102	20.9299
$cccuuuuuuuuuuuucc	chr7:158574728-158575026(-)$1	298	44	62	22.5156
cccyyyyyyyyyyyyyyy	chr7:157610428-157610718(-)$1	290	29	47	20.5399
ffffwwwwwwwwwwwwww	chr1:92775059-92775321(+)$1	262	217	235	20.7708
gggguuuuuuuuuuuugg	chr14:34914525-34914784(-)$1	259	116	134	22.2707
fffavvvvvvvvvvvvva	chr17:55753573-55753822(+)$1	249	27	45	21.7011
f[ccctttttttttttcc	chr11:2154235-2154438(-)$1	203	129	147	21.2708
ddddtttttttttttddd	chr19:4049202-4049445(-)$1	243	202	220	20.6007
[cccyyyyyyyyyyyyyy	chr7:1618229-1618573(+)$1	344	294	312	21.0774
ffffuuuuuuuuuuuuff	chr9:136801962-136802213(-)$1	251	84	102	21.9074
ffffwwwwwwwwwwwwww	chr7:695785-696051(-)$1	266	54	72	20.7708
!cccuuuuuuuuuuuucc	chr8:38776535-38776820(+)$1	285	194	212	22.8162
ffffvvvvvvvvvvvvvf	chr21:47612908-47613146(-)$1	238	40	58	21.4527
eeeewwwwwwwwwwwwww	chr17:80916524-80916794(-)$1	270	104	122	21.0022
ddddtttttttttttddd	chr10:135162916-135163233(+)$1	317	75	93	20.6007
bbwwwwwwwwwwwwwwbb	chr21:46949152-46949372(-)$1	220	54	72	19.2196
ddddwwwwwwwwwwwwww	chr8:145827139-145827391(-)$1	252	187	205	20.9299
eeeeetttttttttttee	chr11:2152607-2152809(-)$1	202	49	67	20.7485
!!bbuuuuuuuuuuuubb	chr12:121425669-121425878(+)$1	209	60	78	21.6989
[ccctttttttttttccc	chr11:2151849-2152064(-)$1	215	83	101	21.4055
eeeeyyyyyyyyyyyyyy	chr19:4553836-4554112(-)$1	276	81	99	20.8315
gggguuuuuuuuuuuugg	chr4:5829410-5829712(+)$1	302	276	294	22.2707
bcccuuuuuuuuuuuucc	chr12:124842813-124843070(-)$1	257	183	201	22.4720
cccvvvvvvvvvvvvvcc	chr20:42193356-42193712(+)$1	356	157	175	21.5725
ee[avvvvvvvvvvvvva	chr22:47400211-47400438(+)$1	227	202	220	21.8064
ccwwwwwwwwwwwwwwcc	chr9:136802600-136802832(-)$1	232	192	210	20.3583
eeeeuuuuuuuuuuuuee	chr21:46950247-46950514(-)$1	267	223	241	22.2116
"cccuuuuuuuuuuuucc	chr17:94603-94828(-)$1	225	190	208	22.7191
eeeeuuuuuuuuuuuuee	chr11:2153255-2153457(-)$1	202	8	26	22.2116
dddduuuuuuuuuuuudd	chr2:10539876-10540133(+)$1	257	236	254	22.1418
ddddtttttttttttddd	chr7:157631775-157632032(-)$1	257	101	119	20.6007
ddddyyyyyyyyyyyyyy	chr9:131345409-131345661(+)$1	252	202	220	20.7592
dddduuuuuuuuuuuudd	chr1:1415265-1415602(+)$1	337	43	61	22.1418
eeeeuuuuuuuuuuuuee	chr11:2153352-2153558(-)$1	206	109	127	22.2116
ffffuuuuuuuuuuuuff	chr17:710297-710589(-)$1	292	191	209	21.9074
dddduuuuuuuuuuuudd	chr11:68154139-68154396(+)$1	257	193	211	22.1418
eeeeuuuuuuuuuuuuee	chr11:2153412-2153614(-)$1	202	165	183	22.2116

#otherMatches

#Seq PSSM
AGUGUUAUAUUCUGCCUC	chr11:2150557-2150760(-)$1	203	10	28	22.1285
agucaccccacacauaga	chr4:7029102-7029373(+)$1	271	55	73	21.7909
CCAUGGAAACAGCGAGGU	chr21:47613936-47614214(-)$1	278	93	111	22.2116
AUCUAAUAUAauauaaac	chr7:55271725-55271973(+)$1	248	21	39	20.9299
UCGCACAUUCGGCCCCCG	chr11:2159456-2159659(-)$1	203	71	89	21.7277
cacacacacccccauaga	chr17:80785674-80785983(+)$1	309	105	123	20.4078
gcacacacacucacacGU	chr7:157800482-157800730(-)$1	248	15	33	22.1418
uacauacacacaccccug	chr22:47400712-47400991(+)$1	279	33	51	21.9074
UAUCUUAUAUUUUCAUGG	chr20:35236183-35236448(+)$1	265	50	68	21.9074
UGCACAUACACACACCUG	chr18:12478127-12478384(-)$1	257	112	130	21.7909
cacacccuacgcacacau	chr22:47399420-47399675(+)$1	255	30	48	21.2996
CCUCACACAAGAUACCAC	chr13:113766170-113766412(+)$1	242	181	199	20.7592
uuacacacacauacucgu	chr6:158051716-158052012(+)$1	296	48	66	22.8162
gaccucuaccaccauugu	chr16:88087905-88088206(+)$1	301	200	218	21.5725
GAUGCACCCGCAACAUCC	chr21:47612223-47612479(-)$1	256	51	69	21.0241
uuuugugugaauuagaaa	chr10:128813071-128813349(+)$1	278	88	106	21.7277
guacaccaucagucagua	chr17:80218135-80218354(-)$1	219	74	92	20.6007
UCAUGCGCAGCACAUACA	chr11:2152667-2152870(-)$1	203	110	128	20.7485
auacacaccauaacacac	chr19:54062961-54063176(+)$1	215	100	118	21.0241
uagaucuuagagacaauu	chr2:101458515-101458743(+)$1	228	129	147	21.7712
GCUUGGAAUAGACAAAAA	chr15:67334813-67335055(-)$1	242	128	146	22.7373
GGAGUCAAAGGAAGCAGC	chr14:104343559-104343854(-)$1	295	79	97	20.6450
cgcaccacaaacacaugc	chr13:113539897-113540179(+)$1	282	39	57	20.4030
augugccaacacacauca	chr12:131441385-131441678(+)$1	293	87	105	20.6450
UCAUGCGCAGCACAUACA	chr11:2152672-2152874(-)$1	202	114	132	20.7485
AGAGAUAAAGGAGCAGCU	chr17:4618848-4619126(+)$1	278	208	226	22.5156
aggcagccacauacacgc	chr7:1927109-1927420(-)$1	311	168	186	21.4810
CCCCCCGCUUUCUUCUGG	chr17:80917373-80917638(-)$1	265	58	76	21.6244
CACACAUGUAUUUGUAGU	chr21:46904518-46904745(+)$1	227	134	152	20.7615
UGCACACAUACAUACCUG	chr17:76889589-76889865(-)$1	276	105	123	22.2707
caugccacaccugccaca	chr3:126258695-126258940(+)$1	245	84	102	20.9299
CACAUUUCUCACAUUUUG	chr7:158574728-158575026(-)$1	298	44	62	22.5156
ACAACACAUAUAUCACAC	chr7:157610428-157610718(-)$1	290	29	47	20.5399
CCUAUAAAUUAGCAAGGU	chr1:92775059-92775321(+)$1	262	217	235	20.7708
guggugugaucucgguuc	chr14:34914525-34914784(-)$1	259	116	134	22.2707
augcacacacgcacacag	chr17:55753573-55753822(+)$1	249	27	45	21.7011
GAGGCCAAACGUCACCGU	chr11:2154235-2154438(-)$1	203	129	147	21.2708
ggguaacguagcucaacc	chr19:4049202-4049445(-)$1	243	202	220	20.6007
AAGCUGAUCCAAGGCCCC	chr7:1618229-1618573(+)$1	344	294	312	21.0774
GGAUUAAACUCUCAUUAU	chr9:136801962-136802213(-)$1	251	84	102	21.9074
gcauccauacauucaccc	chr7:695785-696051(-)$1	266	54	72	20.7708
ACAUGGUCAGAAUUAGGU	chr8:38776535-38776820(+)$1	285	194	212	22.8162
ugccacacacagacauag	chr21:47612908-47613146(-)$1	238	40	58	21.4527
guauacacacacacacac	chr17:80916524-80916794(-)$1	270	104	122	21.0022
ugcacagacaacauaugc	chr10:135162916-135163233(+)$1	317	75	93	20.6007
AGCCCUAUCUCCCUCCCU	chr21:46949152-46949372(-)$1	220	54	72	19.2196
gccuccacacacacacac	chr8:145827139-145827391(-)$1	252	187	205	20.9299
UCAUGCGCAGCACAUACA	chr11:2152607-2152809(-)$1	202	49	67	20.7485
UCCAUAUUUCUUUCCUUG	chr12:121425669-121425878(+)$1	209	60	78	21.6989
GGGGUAGGAAGUGGUCCC	chr11:2151849-2152064(-)$1	215	83	101	21.4055
ugagcccauuaauccauc	chr19:4553836-4554112(-)$1	276	81	99	20.8315
GUUCAAGGAAAAUAAGGA	chr4:5829410-5829712(+)$1	302	276	294	22.2707
GGcacacacacauccaug	chr12:124842813-124843070(-)$1	257	183	201	22.4720
CUGAAAUACACAGCCACA	chr20:42193356-42193712(+)$1	356	157	175	21.5725
ugccuauacacacaccug	chr22:47400211-47400438(+)$1	227	202	220	21.8064
cgcacacacacucacacg	chr9:136802600-136802832(-)$1	232	192	210	20.3583
auggacacacacacacuc	chr21:46950247-46950514(-)$1	267	223	241	22.2116
cgcacacauacucccaug	chr17:94603-94828(-)$1	225	190	208	22.7191
CAUGAAAACCAAAAUCCA	chr11:2153255-2153457(-)$1	202	8	26	22.2116
cucaacaaaacagaaaug	chr2:10539876-10540133(+)$1	257	236	254	22.1418
GACUAUACAUGCUUCAGU	chr7:157631775-157632032(-)$1	257	101	119	20.6007
CCCUUUCUAUUAAGUAUU	chr9:131345409-131345661(+)$1	252	202	220	20.7592
ugcacaaacacccaccug	chr1:1415265-1415602(+)$1	337	43	61	22.1418
CAUGAAAACCAAAAUCCA	chr11:2153352-2153558(-)$1	206	109	127	22.2116
GCUGCAGCCUCGAGACCA	chr17:710297-710589(-)$1	292	191	209	21.9074
gagcggugauucaggagc	chr11:68154139-68154396(+)$1	257	193	211	22.1418
CAUGAAAACCAAAAUCCA	chr11:2153412-2153614(-)$1	202	165	183	22.2116

#DB
.(((.............)	chr11:2150557-2150760(-)$1	1	10	28	22.1285
.(((............))	chr4:7029102-7029373(+)$1	1	55	73	21.7909
((((............))	chr21:47613936-47614214(-)$1	1	93	111	22.2116
((((..............	chr7:55271725-55271973(+)$1	1	21	39	20.9299
((((.............)	chr11:2159456-2159659(-)$1	1	71	89	21.7277
(.((..............	chr17:80785674-80785983(+)$1	1	105	123	20.4078
((((............))	chr7:157800482-157800730(-)$1	1	15	33	22.1418
((((............))	chr22:47400712-47400991(+)$1	1	33	51	21.9074
((((............))	chr20:35236183-35236448(+)$1	1	50	68	21.9074
.(((............))	chr18:12478127-12478384(-)$1	1	112	130	21.7909
..((.............)	chr22:47399420-47399675(+)$1	1	30	48	21.2996
((((..............	chr13:113766170-113766412(+)$1	1	181	199	20.7592
.(((............))	chr6:158051716-158052012(+)$1	1	48	66	22.8162
(((.............))	chr16:88087905-88088206(+)$1	1	200	218	21.5725
((((..............	chr21:47612223-47612479(-)$1	1	51	69	21.0241
((((.............)	chr10:128813071-128813349(+)$1	1	88	106	21.7277
((((...........)))	chr17:80218135-80218354(-)$1	1	74	92	20.6007
(((((...........))	chr11:2152667-2152870(-)$1	1	110	128	20.7485
((((..............	chr19:54062961-54063176(+)$1	1	100	118	21.0241
((((.............)	chr2:101458515-101458743(+)$1	1	129	147	21.7712
((((............))	chr15:67334813-67335055(-)$1	1	128	146	22.7373
(((((...........))	chr14:104343559-104343854(-)$1	1	79	97	20.6450
.(((...........)))	chr13:113539897-113540179(+)$1	1	39	57	20.4030
(((((...........))	chr12:131441385-131441678(+)$1	1	87	105	20.6450
(((((...........))	chr11:2152672-2152874(-)$1	1	114	132	20.7485
.(((............))	chr17:4618848-4619126(+)$1	1	208	226	22.5156
..((............))	chr7:1927109-1927420(-)$1	1	168	186	21.4810
(.((............))	chr17:80917373-80917638(-)$1	1	58	76	21.6244
(((((...........))	chr21:46904518-46904745(+)$1	1	134	152	20.7615
((((............))	chr17:76889589-76889865(-)$1	1	105	123	22.2707
((((..............	chr3:126258695-126258940(+)$1	1	84	102	20.9299
.(((............))	chr7:158574728-158575026(-)$1	1	44	62	22.5156
(((...............	chr7:157610428-157610718(-)$1	1	29	47	20.5399
((((..............	chr1:92775059-92775321(+)$1	1	217	235	20.7708
((((............))	chr14:34914525-34914784(-)$1	1	116	134	22.2707
((((.............)	chr17:55753573-55753822(+)$1	1	27	45	21.7011
(.(((...........))	chr11:2154235-2154438(-)$1	1	129	147	21.2708
((((...........)))	chr19:4049202-4049445(-)$1	1	202	220	20.6007
.(((..............	chr7:1618229-1618573(+)$1	1	294	312	21.0774
((((............))	chr9:136801962-136802213(-)$1	1	84	102	21.9074
((((..............	chr7:695785-696051(-)$1	1	54	72	20.7708
.(((............))	chr8:38776535-38776820(+)$1	1	194	212	22.8162
((((.............)	chr21:47612908-47613146(-)$1	1	40	58	21.4527
((((..............	chr17:80916524-80916794(-)$1	1	104	122	21.0022
((((...........)))	chr10:135162916-135163233(+)$1	1	75	93	20.6007
((..............))	chr21:46949152-46949372(-)$1	1	54	72	19.2196
((((..............	chr8:145827139-145827391(-)$1	1	187	205	20.9299
(((((...........))	chr11:2152607-2152809(-)$1	1	49	67	20.7485
..((............))	chr12:121425669-121425878(+)$1	1	60	78	21.6989
.(((...........)))	chr11:2151849-2152064(-)$1	1	83	101	21.4055
((((..............	chr19:4553836-4554112(-)$1	1	81	99	20.8315
((((............))	chr4:5829410-5829712(+)$1	1	276	294	22.2707
((((............))	chr12:124842813-124843070(-)$1	1	183	201	22.4720
(((.............))	chr20:42193356-42193712(+)$1	1	157	175	21.5725
((.(.............)	chr22:47400211-47400438(+)$1	1	202	220	21.8064
((..............))	chr9:136802600-136802832(-)$1	1	192	210	20.3583
((((............))	chr21:46950247-46950514(-)$1	1	223	241	22.2116
.(((............))	chr17:94603-94828(-)$1	1	190	208	22.7191
((((............))	chr11:2153255-2153457(-)$1	1	8	26	22.2116
((((............))	chr2:10539876-10540133(+)$1	1	236	254	22.1418
((((...........)))	chr7:157631775-157632032(-)$1	1	101	119	20.6007
((((..............	chr9:131345409-131345661(+)$1	1	202	220	20.7592
((((............))	chr1:1415265-1415602(+)$1	1	43	61	22.1418
((((............))	chr11:2153352-2153558(-)$1	1	109	127	22.2116
((((............))	chr17:710297-710589(-)$1	1	191	209	21.9074
((((............))	chr11:68154139-68154396(+)$1	1	193	211	22.1418
((((............))	chr11:2153412-2153614(-)$1	1	165	183	22.2116

#PSSM
e : 0.19	d : 0.19	f : 0.13	g : 0.11	c : 0.10	! : 0.05	[ : 0.04	: : 0.04	$ : 0.02	" : 0.02	b : 0.02	= : 0.01	
c : 0.25	e : 0.19	d : 0.19	f : 0.11	g : 0.11	[ : 0.04	! : 0.02	" : 0.01	= : 0.01	b : 0.01	
c : 0.25	d : 0.19	e : 0.17	f : 0.11	g : 0.11	b : 0.07	w : 0.02	= : 0.01	[ : 0.01	
c : 0.20	d : 0.19	e : 0.17	g : 0.11	f : 0.10	b : 0.07	v : 0.02	a : 0.02	w : 0.02	= : 0.01	y : 0.01	
u : 0.41	v : 0.14	w : 0.14	y : 0.08	t : 0.08	e : 0.04	g : 0.02	= : 0.01	c : 0.01	
u : 0.41	t : 0.19	v : 0.14	w : 0.14	y : 0.08	
u : 0.41	t : 0.19	v : 0.14	w : 0.14	y : 0.08	
u : 0.41	t : 0.19	v : 0.14	w : 0.14	y : 0.08	
u : 0.41	t : 0.19	v : 0.14	w : 0.14	y : 0.08	
u : 0.41	t : 0.19	v : 0.14	w : 0.14	y : 0.08	
u : 0.41	t : 0.19	v : 0.14	w : 0.14	y : 0.08	
u : 0.41	t : 0.19	v : 0.14	w : 0.14	y : 0.08	
u : 0.41	t : 0.19	v : 0.14	w : 0.14	y : 0.08	
u : 0.41	t : 0.19	v : 0.14	w : 0.14	y : 0.08	
u : 0.41	t : 0.19	v : 0.14	w : 0.14	y : 0.08	
u : 0.41	v : 0.14	w : 0.14	t : 0.10	y : 0.08	d : 0.05	c : 0.02	
c : 0.22	v : 0.11	e : 0.11	w : 0.11	d : 0.11	y : 0.08	g : 0.07	f : 0.05	b : 0.05	= : 0.01	
c : 0.23	e : 0.14	w : 0.11	d : 0.11	y : 0.08	g : 0.08	f : 0.07	b : 0.07	a : 0.02	= : 0.01	

#score	1438.9221832786332
#seq	67
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF233ZXV_DHX30_UTR_m1_run1.txt

#BEAR
[eeeee!!ccc####cccmmmmccc4444ccc]eeeee]b	chr11:10529716-10529951(-)$1	235	83	123	20.6813
!eeeee[ccc^^^^^^^^^^^^^^^^^^^ccceeeee444	chr11:2150892-2151098(-)$1	206	33	73	21.1428
cc[bb[ffffff[bbbb[ammmma333bb]bbffffff]b	chr11:2150800-2151012(-)$1	212	88	128	19.8760
ggggggg[bb^^^^^^^^^^^^^^^^^^^^^^^bbggggg	chr11:10529566-10529799(-)$1	233	170	210	15.0360
cc[bb[ffffff[bbbb[ammmma333bb]bbffffff]b	chr11:2150833-2151047(-)$1	214	123	163	19.8760
!eeeee[ccc^^^^^^^^^^^^^^^^^^^ccceeeee444	chr11:2151001-2151212(-)$1	211	147	187	21.1428
cc[bb[ffffff[bbbb[ammmma333bb]bbffffff]b	chr11:2150853-2151058(-)$1	205	134	174	19.8760
!eeeee[ccc^^^^^^^^^^^^^^^^^^^ccceeeee444	chr11:2150881-2151092(-)$1	211	27	67	21.1428
!!dddd[===========mmmm===========dddd444	chrX:55207974-55208247(-)$1	273	185	225	13.5883
cc[bb[ffffff[bbbb[ammmma333bb]bbffffff]b	chr11:2150858-2151063(-)$1	205	139	179	19.8760
:eeeee!!ccc####cccmmmmccc4444ccc]eeeee::	chr11:10529787-10530038(-)$1	251	170	210	17.6737
!ccc[ggggggg"""cccmmmmccc333ggggggg]ccc]	chrX:20284739-20285011(-)$1	272	156	196	14.6898
!eeeee[ccc^^^^^^^^^^^^^^^^^^^ccceeeee444	chr11:2150970-2151201(-)$1	231	136	176	21.1428
!eeeee[ccc^^^^^^^^^^^^^^^^^^^ccceeeee444	chr11:2150954-2151164(-)$1	210	99	139	21.1428
cc[bb[ffffff[bbbb[ammmma333bb]bbffffff]b	chr11:2150812-2151018(-)$1	206	94	134	19.8760
eeee[a[eeeee[a[bb[annnnna]bb333a]eeeee]a	chr11:2151054-2151262(-)$1	208	30	70	15.0540
[eeeee[bbccc[ddddlllddddccc333bb]eeeee]a	chr17:56429563-56429779(-)$1	216	18	58	15.0222
[a!!===========[bbmmmmbb]===========]a]d	chr11:838320-838607(+)$1	287	66	106	13.1142
[eeeee!!ccc####cccmmmmccc4444ccc]eeeee]b	chr11:10529751-10529980(-)$1	229	112	152	20.6813
!eeeee[ccc^^^^^^^^^^^^^^^^^^^ccceeeee444	chr11:2150863-2151081(-)$1	218	16	56	21.1428
cc[bb[ffffff[bbbb[ammmma333bb]bbffffff]b	chr11:2150788-2151000(-)$1	212	76	116	19.8760
:eeeee!!ccc####cccmmmmccc4444ccc]eeeee::	chr6:62284028-62284301(+)$1	273	109	149	17.6737
cc[bb[ffffff[bbbb[ammmma333bb]bbffffff]b	chr11:2150849-2151053(-)$1	204	129	169	19.8760
:eeeee!!bb####cccammmma]ccc333bb]eeeee:D	chr16:3421875-3422132(-)$1	257	135	175	15.8072
cc[bb[ffffff[bbbb[ammmma333bb]bbffffff]b	chr11:2150818-2151032(-)$1	214	108	148	19.8760
[eeeee[bbccc[ddddlllddddccc333bb]eeeee]a	chr17:56429558-56429763(-)$1	205	2	42	15.0222

#otherMatches

#Seq PSSM
CACCGCCUGCCCAGUGACAUGCGUUUaacggccgcgguac	chr11:10529716-10529951(-)$1	235	83	123	20.6813
UCUGGGAGGUUUACCUCGCCCCCACUUGUGCCCCCAGCUC	chr11:2150892-2151098(-)$1	206	33	73	21.1428
CCUCAGUCGCAGAGGGUCCCUCGGCAAGCGCCCUGUGAGU	chr11:2150800-2151012(-)$1	212	88	128	19.8760
GCCCUAAACUAUCAAACCUGCGUGAAAAAUUUCGGUUGGG	chr11:10529566-10529799(-)$1	233	170	210	15.0360
CCUCAGUCGCAGAGGGUCCCUCGGCAAGCGCCCUGUGAGU	chr11:2150833-2151047(-)$1	214	123	163	19.8760
UCUGGGAGGUUUACCUCGCCCCCACUUGUGCCCCCAGCUC	chr11:2151001-2151212(-)$1	211	147	187	21.1428
CCUCAGUCGCAGAGGGUCCCUCGGCAAGCGCCCUGUGAGU	chr11:2150853-2151058(-)$1	205	134	174	19.8760
UCUGGGAGGUUUACCUCGCCCCCACUUGUGCCCCCAGCUC	chr11:2150881-2151092(-)$1	211	27	67	21.1428
CAGGACAUCCUAAUGGUGUCACCGCUAUUAGGGGUUCGUU	chrX:55207974-55208247(-)$1	273	185	225	13.5883
CCUCAGUCGCAGAGGGUCCCUCGGCAAGCGCCCUGUGAGU	chr11:2150858-2151063(-)$1	205	139	179	19.8760
CACCGCCUGCCCAGUGACAUGCGUUUaacggccgcgguac	chr11:10529787-10530038(-)$1	251	170	210	17.6737
gccgccgccgccgcugccgUGGGGCUCgggcggcgacgga	chrX:20284739-20285011(-)$1	272	156	196	14.6898
UCUGGGAGGUUUACCUCGCCCCCACUUGUGCCCCCAGCUC	chr11:2150970-2151201(-)$1	231	136	176	21.1428
UCUGGGAGGUUUACCUCGCCCCCACUUGUGCCCCCAGCUC	chr11:2150954-2151164(-)$1	210	99	139	21.1428
CCUCAGUCGCAGAGGGUCCCUCGGCAAGCGCCCUGUGAGU	chr11:2150812-2151018(-)$1	206	94	134	19.8760
UGGGGUGAGGCCGGGGAGUAGGGAGGUCAGGCGGGUCUGA	chr11:2151054-2151262(-)$1	208	30	70	15.0540
ACAGCCUCCGCCGCGCCCUCGGCGGGCUCAGGUGGCUGCG	chr17:56429563-56429779(-)$1	216	18	58	15.0222
CGAAGUUUGGGGGGUGUUUUGUGGGGCUCCCCAGACACAC	chr11:838320-838607(+)$1	287	66	106	13.1142
CACCGCCUGCCCAGUGACAUGCGUUUaacggccgcgguac	chr11:10529751-10529980(-)$1	229	112	152	20.6813
UCUGGGAGGUUUACCUCGCCCCCACUUGUGCCCCCAGCUC	chr11:2150863-2151081(-)$1	218	16	56	21.1428
CCUCAGUCGCAGAGGGUCCCUCGGCAAGCGCCCUGUGAGU	chr11:2150788-2151000(-)$1	212	76	116	19.8760
CACCGCCUGCCCAGUGACAUAUGUUUAACGGCCGUGGUAC	chr6:62284028-62284301(+)$1	273	109	149	17.6737
CCUCAGUCGCAGAGGGUCCCUCGGCAAGCGCCCUGUGAGU	chr11:2150849-2151053(-)$1	204	129	169	19.8760
CACCGCCUGCCCAGUGACAUAUGUUCAACAGCUGCGGUAU	chr16:3421875-3422132(-)$1	257	135	175	15.8072
CCUCAGUCGCAGAGGGUCCCUCGGCAAGCGCCCUGUGAGU	chr11:2150818-2151032(-)$1	214	108	148	19.8760
ACAGCCUCCGCCGCGCCCUCGGCGGGCUCAGGUGGCUGCG	chr17:56429558-56429763(-)$1	205	2	42	15.0222

#DB
.(((((..(((....(((....)))....))).))))).)	chr11:10529716-10529951(-)$1	1	83	123	20.6813
.(((((.(((...................))))))))...	chr11:2150892-2151098(-)$1	1	33	73	21.1428
((.((.((((((.((((.(....)...)).)))))))).)	chr11:2150800-2151012(-)$1	1	88	128	19.8760
(((((((.((.......................)))))))	chr11:10529566-10529799(-)$1	1	170	210	15.0360
((.((.((((((.((((.(....)...)).)))))))).)	chr11:2150833-2151047(-)$1	1	123	163	19.8760
.(((((.(((...................))))))))...	chr11:2151001-2151212(-)$1	1	147	187	21.1428
((.((.((((((.((((.(....)...)).)))))))).)	chr11:2150853-2151058(-)$1	1	134	174	19.8760
.(((((.(((...................))))))))...	chr11:2150881-2151092(-)$1	1	27	67	21.1428
..((((.(((((((((((....)))))))))))))))...	chrX:55207974-55208247(-)$1	1	185	225	13.5883
((.((.((((((.((((.(....)...)).)))))))).)	chr11:2150858-2151063(-)$1	1	139	179	19.8760
.(((((..(((....(((....)))....))).)))))..	chr11:10529787-10530038(-)$1	1	170	210	17.6737
.(((.(((((((...(((....)))...))))))).))).	chrX:20284739-20285011(-)$1	1	156	196	14.6898
.(((((.(((...................))))))))...	chr11:2150970-2151201(-)$1	1	136	176	21.1428
.(((((.(((...................))))))))...	chr11:2150954-2151164(-)$1	1	99	139	21.1428
((.((.((((((.((((.(....)...)).)))))))).)	chr11:2150812-2151018(-)$1	1	94	134	19.8760
((((.(.(((((.(.((.(.....).))...).))))).)	chr11:2151054-2151262(-)$1	1	30	70	15.0540
.(((((.(((((.((((...)))))))...)).))))).)	chr17:56429563-56429779(-)$1	1	18	58	15.0222
.(..(((((((((((.((....)).))))))))))).).)	chr11:838320-838607(+)$1	1	66	106	13.1142
.(((((..(((....(((....)))....))).))))).)	chr11:10529751-10529980(-)$1	1	112	152	20.6813
.(((((.(((...................))))))))...	chr11:2150863-2151081(-)$1	1	16	56	21.1428
((.((.((((((.((((.(....)...)).)))))))).)	chr11:2150788-2151000(-)$1	1	76	116	19.8760
.(((((..(((....(((....)))....))).)))))..	chr6:62284028-62284301(+)$1	1	109	149	17.6737
((.((.((((((.((((.(....)...)).)))))))).)	chr11:2150849-2151053(-)$1	1	129	169	19.8760
.(((((..((....((((....).)))...)).))))).)	chr16:3421875-3422132(-)$1	1	135	175	15.8072
((.((.((((((.((((.(....)...)).)))))))).)	chr11:2150818-2151032(-)$1	1	108	148	19.8760
.(((((.(((((.((((...)))))))...)).))))).)	chr17:56429558-56429763(-)$1	1	2	42	15.0222

#PSSM
! : 0.30	c : 0.30	[ : 0.19	: : 0.11	g : 0.03	e : 0.03	
e : 0.53	c : 0.34	g : 0.03	! : 0.03	a : 0.03	
e : 0.53	[ : 0.30	g : 0.03	d : 0.03	c : 0.03	! : 0.03	
e : 0.53	b : 0.30	g : 0.03	d : 0.03	c : 0.03	! : 0.03	
e : 0.49	b : 0.30	[ : 0.07	g : 0.03	d : 0.03	= : 0.03	
e : 0.49	[ : 0.30	g : 0.07	d : 0.03	a : 0.03	= : 0.03	
[ : 0.38	f : 0.30	! : 0.19	g : 0.07	= : 0.03	
f : 0.30	c : 0.23	! : 0.19	= : 0.07	b : 0.07	[ : 0.03	g : 0.03	e : 0.03	
c : 0.38	f : 0.30	b : 0.15	= : 0.07	g : 0.03	e : 0.03	
c : 0.46	f : 0.30	b : 0.07	= : 0.07	g : 0.03	e : 0.03	
f : 0.30	^ : 0.26	c : 0.23	= : 0.07	g : 0.03	e : 0.03	# : 0.03	
f : 0.30	^ : 0.26	# : 0.19	= : 0.07	c : 0.07	g : 0.03	e : 0.03	
[ : 0.42	^ : 0.26	# : 0.19	= : 0.07	" : 0.03	
b : 0.30	^ : 0.26	# : 0.19	= : 0.07	d : 0.07	" : 0.03	a : 0.03	
b : 0.30	^ : 0.26	# : 0.15	= : 0.07	d : 0.07	" : 0.03	[ : 0.03	c : 0.03	
b : 0.34	^ : 0.26	c : 0.23	d : 0.07	= : 0.03	[ : 0.03	
b : 0.38	^ : 0.26	c : 0.23	d : 0.07	= : 0.03	
[ : 0.34	^ : 0.26	c : 0.19	l : 0.07	= : 0.03	b : 0.03	a : 0.03	
a : 0.34	m : 0.30	^ : 0.26	l : 0.07	
m : 0.61	^ : 0.26	l : 0.07	n : 0.03	
m : 0.61	^ : 0.26	d : 0.07	n : 0.03	
m : 0.61	^ : 0.26	d : 0.07	n : 0.03	
m : 0.30	^ : 0.26	c : 0.19	d : 0.07	= : 0.03	n : 0.03	b : 0.03	a : 0.03	
a : 0.30	^ : 0.26	c : 0.19	d : 0.07	= : 0.03	n : 0.03	b : 0.03	] : 0.03	
c : 0.30	3 : 0.30	^ : 0.26	= : 0.03	a : 0.03	] : 0.03	
3 : 0.34	^ : 0.26	4 : 0.15	c : 0.11	= : 0.07	] : 0.03	
3 : 0.34	^ : 0.26	4 : 0.15	c : 0.11	= : 0.07	b : 0.03	
b : 0.34	^ : 0.26	4 : 0.15	3 : 0.15	= : 0.07	
b : 0.30	^ : 0.26	4 : 0.15	3 : 0.15	= : 0.07	g : 0.03	
c : 0.38	] : 0.30	3 : 0.15	= : 0.07	^ : 0.03	g : 0.03	
b : 0.42	c : 0.38	= : 0.07	^ : 0.03	g : 0.03	3 : 0.03	
b : 0.42	c : 0.38	= : 0.07	^ : 0.03	g : 0.03	a : 0.03	
] : 0.30	f : 0.30	e : 0.23	= : 0.07	^ : 0.03	g : 0.03	
e : 0.53	f : 0.30	b : 0.03	d : 0.03	g : 0.03	= : 0.03	
e : 0.53	f : 0.30	b : 0.03	d : 0.03	g : 0.03	= : 0.03	
e : 0.53	f : 0.30	g : 0.03	d : 0.03	] : 0.03	= : 0.03	
e : 0.53	f : 0.30	g : 0.03	d : 0.03	c : 0.03	] : 0.03	
e : 0.30	f : 0.30	4 : 0.26	g : 0.03	c : 0.03	a : 0.03	
] : 0.53	4 : 0.26	: : 0.11	g : 0.03	c : 0.03	
b : 0.38	4 : 0.26	a : 0.11	: : 0.07	g : 0.03	] : 0.03	d : 0.03	D : 0.03	

#score	479.91015868465774
#seq	26
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_CDS_m1_run1.txt

#BEAR
eee!!a[ccc[cccooooooccc]ccc]a22eeeee888	chr17:34171869-34172143(+)$1	274	96	135	26.6932
a[bb[ccc!!ddddnnnnndddd22cccbb]a]ccc]dd	chr6:30550090-30550369(+)$1	279	120	159	26.1382

#otherMatches

#Seq PSSM
GGUGGCGGCUAUGGAGGAGACCGAGGUGGGGGCUACGGA	chr17:34171869-34172143(+)$1	274	96	135	26.6932
aaggaggagaGUCUAAGGCAGAUGAUCCCUAUGCUCAUC	chr6:30550090-30550369(+)$1	279	120	159	26.1382

#DB
(((..(.(((.(((......))).))).)..)))))...	chr17:34171869-34172143(+)$1	1	96	135	26.6932
(.((.(((..((((.....))))..))))).).))).))	chr6:30550090-30550369(+)$1	1	120	159	26.1382

#PSSM
e : 0.50	a : 0.50	
e : 0.50	[ : 0.50	
e : 0.50	b : 0.50	
! : 0.50	b : 0.50	
! : 0.50	[ : 0.50	
a : 0.50	c : 0.50	
[ : 0.50	c : 0.50	
c : 1.00	
c : 0.50	! : 0.50	
c : 0.50	! : 0.50	
[ : 0.50	d : 0.50	
c : 0.50	d : 0.50	
c : 0.50	d : 0.50	
c : 0.50	d : 0.50	
o : 0.50	n : 0.50	
o : 0.50	n : 0.50	
o : 0.50	n : 0.50	
o : 0.50	n : 0.50	
o : 0.50	n : 0.50	
o : 0.50	d : 0.50	
c : 0.50	d : 0.50	
c : 0.50	d : 0.50	
c : 0.50	d : 0.50	
] : 0.50	2 : 0.50	
c : 0.50	2 : 0.50	
c : 1.00	
c : 1.00	
] : 0.50	c : 0.50	
a : 0.50	b : 0.50	
2 : 0.50	b : 0.50	
2 : 0.50	] : 0.50	
e : 0.50	a : 0.50	
e : 0.50	] : 0.50	
e : 0.50	c : 0.50	
e : 0.50	c : 0.50	
e : 0.50	c : 0.50	
8 : 0.50	] : 0.50	
8 : 0.50	d : 0.50	
8 : 0.50	d : 0.50	

#score	52.83148749325001
#seq	2
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_CDS_m1_run2.txt

#BEAR
hhhhhhhddddcccqqqqqqqqccc22dddd333hhhh	chr4:78740075-78740321(-)$1	246	176	214	15.9634
dd"""dddd"""cccooooooccc333dddd22dddd]	chr6:31508840-31509044(-)$1	204	57	95	12.9606
hhhhhh####ffffffooooooffffff333hhhhhhh	chr17:73774724-73774970(-)$1	246	7	45	12.0736
ccc!!iiiiiiiiiqqqqqqqqiiiiiiiiiccchhhh	chr1:249151853-249152142(-)$1	289	98	136	16.2003
======="""eeeeebblllbb]eeeee22========	chr2:97482284-97482545(+)$1	261	9	47	10.4718
iiiiiiiii!!cccqqqqqqqqccc4444iiiiiiiii	chr2:216300345-216300618(-)$1	273	19	57	19.0203
hhh!!bb####cccqqqqqqqqccc4444bb]hhhhhh	chr11:116707960-116708207(-)$1	247	20	58	17.6398
ffffccc"""ccccccooooooccc]ccc22ccc]fff	chr22:19929020-19929366(-)$1	346	19	57	12.4441
b"""bb!!a"""bbqqqqqqqqbb22a22bbbb]eeee	chr6:31508844-31509054(-)$1	210	36	74	14.3870
ggggggggggggggrrrrrrrrrggggggg]ggggggg	chr3:13418919-13419161(-)$1	242	88	126	14.2184
hhhhh!!a####bbqqqqqqqqbb333a22hhhhhhhh	chr8:145693805-145694074(+)$1	269	82	120	17.0560
f]bbccc####eeeeeooooooeeeee4444ccc:ccc	chr3:15900714-15900989(-)$1	275	208	246	10.7859
c$$$$$dddd!!bbqqqqqqqqbb22dddd4444ccce	chr17:48827967-48828254(+)$1	287	36	74	13.8134
gggggg!!ddddcccpppppppccc22dddd22ggggg	chr12:57039567-57039835(-)$1	268	73	111	13.6184
d####dddd[ddddssssssssssdddd]dddd333dd	chr19:2270346-2270589(+)$1	243	51	89	11.7738
hhhhhhh####cccrrrrrrrrrccc4444hhhhhhhh	chr11:5275503-5275744(-)$1	241	120	158	16.0566
!!===========bbpppppppbb]===========ff	chr3:13461567-13461855(-)$1	288	151	189	13.4908
cdddd[ddddddddqqqqqqqqdddd]dddd]dddd]c	chr3:133465151-133465428(+)$1	277	161	199	12.5881
ggggggg[a[ddddssssssssssdddd]a22gggggg	chr11:116707700-116707974(-)$1	274	181	219	14.3072
!===========ssssssssss===========22a]c	chr14:94849370-94849659(-)$1	289	143	181	14.8534
cc!!eeeee!!cccqqqqqqqqccc22eeeee]ccc::	chr18:209917-210168(+)$1	251	75	113	13.7091
======gggggggrrrrrrrrrggggggg]========	chr3:13418961-13419228(-)$1	267	156	194	14.5275

#otherMatches

#Seq PSSM
GGCUCCCGAGCCUCGCAGGUGAGAGCUGCUCCUAGGGG	chr4:78740075-78740321(-)$1	246	176	214	15.9634
GGGAGGCUGAGAGCUAUGGGAGGUGGACGGCGGCCAUA	chr6:31508840-31509044(-)$1	204	57	95	12.9606
GUUGGUGAGGGAGAUCGCGCAGGAUUUCAAAACCGACC	chr17:73774724-73774970(-)$1	246	7	45	12.0736
GCUGUGUCCUCUGUGCAGGUAGGUAGGGGAUGGCAGGG	chr1:249151853-249152142(-)$1	289	98	136	16.2003
GCGGGCGAGUGGCGCGCGCUGCUGCGCUUGCGCCUGCG	chr2:97482284-97482545(+)$1	261	9	47	10.4718
GCAGGUUGCGAAGGGAAGCAAACUUGGUGGCAACUUGC	chr2:216300345-216300618(-)$1	273	19	57	19.0203
GGGGAGCACGGGGCUUCUGCAUGCUGAAGGCACCCCAC	chr11:116707960-116708207(-)$1	247	20	58	17.6398
UGCCCCAGAAGCCCCACGACGAUGGCGGCAAUGGCGGU	chr22:19929020-19929366(-)$1	346	19	57	12.4441
UUAAACAGCGGAAGGGAGGAUACUGAGAAGUGGGAGGC	chr6:31508844-31509054(-)$1	210	36	74	14.3870
GCCUGUUUUAGGGUUCACUGUUCACCCUGGUGACAGGU	chr3:13418919-13419161(-)$1	242	88	126	14.2184
UCAGUGACAGGGGUGGGGUUGGGCGGGGCAGCUGGGGG	chr8:145693805-145694074(+)$1	269	82	120	17.0560
UGCGAGGGAAACGGGGGUCCUGCCCCGGGGACCUGCGC	chr3:15900714-15900989(-)$1	275	208	246	10.7859
UGACACUCAGUCCAAUUAAAACUGAUCUGAUAAGACCU	chr17:48827967-48828254(+)$1	287	36	74	13.8134
CACCCGGACUACGCCAUGUUGGGGUUUGUGGGUCGGGU	chr12:57039567-57039835(-)$1	268	73	111	13.6184
CGGACCUCGUGGGCCCCGUUUUUCGCCCCUGAGCGAGU	chr19:2270346-2270589(+)$1	243	51	89	11.7738
CUUGGGAGAUGCCAUAAAGCACCUGGAUGAUCUCAAGG	chr11:5275503-5275744(-)$1	241	120	158	16.0566
UGCUGCUGCUGACGCUGUCGGUGCUGUUGGCGGCGGGC	chr3:13461567-13461855(-)$1	288	151	189	13.4908
UCUGCGCCGUCCUGGGUGAGUGCGGGCACGGGGUAGCA	chr3:133465151-133465428(+)$1	277	161	199	12.5881
UACGUGGAUGUGCUCAAAGACAGCGGCAGAGACUAUGU	chr11:116707700-116707974(-)$1	274	181	219	14.3072
CUGUCUCCCUGGCUGAGGAUCCCCAGGGAGAUGCUGCC	chr14:94849370-94849659(-)$1	289	143	181	14.8534
AGAAAGAAGUUAAGUAUGAACCCUUUUCUUUUGCUGAU	chr18:209917-210168(+)$1	251	75	113	13.7091
CCUGUUUUAGGGUUCACUGUUCACCCUGGUGACAGGUG	chr3:13418961-13419228(-)$1	267	156	194	14.5275

#DB
((((((((((((((........)))..))))...))))	chr4:78740075-78740321(-)$1	1	176	214	15.9634
((...((((...(((......)))...))))..)))).	chr6:31508840-31509044(-)$1	1	57	95	12.9606
((((((....((((((......))))))...)))))))	chr17:73774724-73774970(-)$1	1	7	45	12.0736
(((..(((((((((........))))))))))))))))	chr1:249151853-249152142(-)$1	1	98	136	16.2003
(((((((...(((((((...)).)))))..))))))))	chr2:97482284-97482545(+)$1	1	9	47	10.4718
(((((((((..(((........)))....)))))))))	chr2:216300345-216300618(-)$1	1	19	57	19.0203
(((..((....(((........)))....)).))))))	chr11:116707960-116708207(-)$1	1	20	58	17.6398
(((((((...((((((......))).)))..))).)))	chr22:19929020-19929366(-)$1	1	19	57	12.4441
(...((..(...((........))..)..)))).))))	chr6:31508844-31509054(-)$1	1	36	74	14.3870
((((((((((((((.........))))))).)))))))	chr3:13418919-13419161(-)$1	1	88	126	14.2184
(((((..(....((........))...)..))))))))	chr8:145693805-145694074(+)$1	1	82	120	17.0560
).))(((....(((((......)))))....))).(((	chr3:15900714-15900989(-)$1	1	208	246	10.7859
(.....((((..((........))..))))....))))	chr17:48827967-48828254(+)$1	1	36	74	13.8134
((((((..(((((((.......)))..))))..)))))	chr12:57039567-57039835(-)$1	1	73	111	13.6184
(....((((.((((..........)))).))))...))	chr19:2270346-2270589(+)$1	1	51	89	11.7738
(((((((....(((.........)))....))))))))	chr11:5275503-5275744(-)$1	1	120	158	16.0566
..(((((((((((((.......)).)))))))))))))	chr3:13461567-13461855(-)$1	1	151	189	13.4908
(((((.((((((((........)))).)))).)))).)	chr3:133465151-133465428(+)$1	1	161	199	12.5881
(((((((.(.((((..........)))).)..))))))	chr11:116707700-116707974(-)$1	1	181	219	14.3072
.(((((((((((..........)))))))))))..).)	chr14:94849370-94849659(-)$1	1	143	181	14.8534
((..(((((..(((........)))..))))).)))..	chr18:209917-210168(+)$1	1	75	113	13.7091
(((((((((((((.........))))))).))))))))	chr3:13418961-13419228(-)$1	1	156	194	14.5275

#PSSM
h : 0.22	c : 0.18	g : 0.13	d : 0.09	= : 0.09	f : 0.09	! : 0.09	i : 0.04	b : 0.04	
h : 0.22	= : 0.13	g : 0.13	d : 0.09	c : 0.09	i : 0.04	f : 0.04	" : 0.04	] : 0.04	$ : 0.04	# : 0.04	! : 0.04	
h : 0.22	= : 0.18	g : 0.13	" : 0.09	c : 0.04	i : 0.04	f : 0.04	b : 0.04	$ : 0.04	# : 0.04	d : 0.04	! : 0.04	
h : 0.18	= : 0.18	! : 0.13	g : 0.13	" : 0.09	i : 0.04	f : 0.04	b : 0.04	$ : 0.04	# : 0.04	d : 0.04	
h : 0.18	= : 0.18	g : 0.13	! : 0.09	c : 0.09	" : 0.04	i : 0.04	b : 0.04	$ : 0.04	# : 0.04	d : 0.04	e : 0.04	
= : 0.18	h : 0.13	g : 0.13	d : 0.09	i : 0.09	b : 0.09	c : 0.09	! : 0.04	$ : 0.04	[ : 0.04	e : 0.04	
d : 0.18	= : 0.13	! : 0.13	g : 0.13	h : 0.09	i : 0.09	c : 0.09	# : 0.04	b : 0.04	e : 0.04	
d : 0.22	# : 0.18	i : 0.09	" : 0.09	! : 0.09	g : 0.09	= : 0.09	a : 0.04	[ : 0.04	e : 0.04	
d : 0.27	# : 0.22	i : 0.09	" : 0.09	a : 0.09	g : 0.09	= : 0.09	e : 0.04	
# : 0.22	d : 0.18	" : 0.18	! : 0.09	g : 0.09	[ : 0.09	= : 0.09	i : 0.04	
d : 0.22	# : 0.18	! : 0.13	" : 0.09	g : 0.09	= : 0.09	f : 0.04	i : 0.04	e : 0.04	c : 0.04	
c : 0.27	d : 0.18	" : 0.09	e : 0.09	g : 0.09	= : 0.09	f : 0.04	i : 0.04	# : 0.04	! : 0.04	
c : 0.36	b : 0.13	d : 0.13	e : 0.09	g : 0.09	f : 0.04	i : 0.04	= : 0.04	s : 0.04	
c : 0.36	b : 0.18	d : 0.13	e : 0.09	f : 0.04	i : 0.04	g : 0.04	s : 0.04	r : 0.04	
q : 0.40	c : 0.13	r : 0.13	s : 0.13	e : 0.09	f : 0.04	b : 0.04	
q : 0.40	r : 0.13	s : 0.13	p : 0.09	o : 0.04	f : 0.04	b : 0.04	c : 0.04	e : 0.04	
q : 0.40	o : 0.18	r : 0.13	s : 0.13	p : 0.09	b : 0.04	
q : 0.40	o : 0.18	r : 0.13	s : 0.13	p : 0.09	l : 0.04	
q : 0.40	o : 0.18	r : 0.13	s : 0.13	p : 0.09	l : 0.04	
q : 0.40	o : 0.18	r : 0.13	s : 0.13	p : 0.09	l : 0.04	
q : 0.40	o : 0.18	r : 0.13	s : 0.13	p : 0.09	b : 0.04	
q : 0.40	o : 0.13	r : 0.13	s : 0.13	p : 0.09	c : 0.04	b : 0.04	
c : 0.31	b : 0.18	r : 0.09	s : 0.09	f : 0.04	i : 0.04	] : 0.04	e : 0.04	d : 0.04	= : 0.04	g : 0.04	
c : 0.36	b : 0.18	e : 0.09	g : 0.09	s : 0.09	f : 0.04	i : 0.04	d : 0.04	= : 0.04	
c : 0.31	d : 0.13	3 : 0.09	e : 0.09	2 : 0.09	g : 0.09	f : 0.04	i : 0.04	] : 0.04	= : 0.04	
2 : 0.22	d : 0.13	3 : 0.09	e : 0.09	4 : 0.09	g : 0.09	= : 0.09	f : 0.04	i : 0.04	] : 0.04	c : 0.04	
2 : 0.13	4 : 0.13	d : 0.13	3 : 0.09	e : 0.09	g : 0.09	= : 0.09	f : 0.04	i : 0.04	c : 0.04	a : 0.04	] : 0.04	
d : 0.31	4 : 0.18	e : 0.09	g : 0.09	= : 0.09	f : 0.04	i : 0.04	c : 0.04	2 : 0.04	a : 0.04	
d : 0.22	4 : 0.18	2 : 0.13	g : 0.09	] : 0.09	= : 0.09	3 : 0.04	i : 0.04	c : 0.04	e : 0.04	
d : 0.27	2 : 0.13	i : 0.09	b : 0.09	4 : 0.09	= : 0.09	3 : 0.04	g : 0.04	a : 0.04	e : 0.04	] : 0.04	
d : 0.22	= : 0.18	i : 0.09	b : 0.09	2 : 0.09	h : 0.09	4 : 0.09	3 : 0.04	] : 0.04	e : 0.04	
= : 0.18	2 : 0.13	h : 0.13	c : 0.13	] : 0.09	3 : 0.04	i : 0.04	b : 0.04	g : 0.04	4 : 0.04	d : 0.04	e : 0.04	
h : 0.18	= : 0.18	c : 0.13	2 : 0.09	g : 0.09	d : 0.09	3 : 0.04	i : 0.04	b : 0.04	4 : 0.04	] : 0.04	
h : 0.18	c : 0.18	= : 0.13	g : 0.13	3 : 0.09	d : 0.09	i : 0.04	] : 0.04	4 : 0.04	2 : 0.04	
h : 0.27	= : 0.13	g : 0.13	d : 0.09	c : 0.09	i : 0.04	] : 0.04	e : 0.04	: : 0.04	3 : 0.04	2 : 0.04	
h : 0.27	= : 0.13	g : 0.13	c : 0.13	d : 0.09	i : 0.04	f : 0.04	e : 0.04	3 : 0.04	a : 0.04	
h : 0.27	g : 0.13	d : 0.09	= : 0.09	f : 0.09	c : 0.09	] : 0.09	i : 0.04	e : 0.04	: : 0.04	
h : 0.27	g : 0.13	c : 0.13	= : 0.09	f : 0.09	e : 0.09	] : 0.04	i : 0.04	d : 0.04	: : 0.04	

#score	311.9607231173274
#seq	22
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_CDS_m1_run2.txt

#BEAR
f"""ccctttttttttttccc]ff	chr22:22892058-22892280(-)$1	222	84	108	22.0392
""ddddtttttttttttdddd22e	chr1:28793024-28793281(+)$1	257	229	253	22.4767
ccc[ccctttttttttttcccccc	chr1:8416115-8416410(-)$1	295	232	256	22.2135
$$eeeeettttttttttteeeee2	chrX:48650350-48650594(+)$1	244	103	127	22.0798
cbb[bbuuuuuuuuuuuubbbb]c	chr17:26900984-26901251(-)$1	267	88	112	21.5750
eeeeyyyyyyyyyyyyyyyyeeee	chr1:33236653-33236962(+)$1	309	121	145	22.8290
DDddddwwwwwwwwwwwwwwdddd	chr17:40947118-40947474(+)$1	356	78	102	20.3903
dd!!bbuuuuuuuuuuuubb22dd	chr5:137803364-137803721(+)$1	357	108	132	22.2119
ceeeeevvvvvvvvvvvvveeeee	chr17:7416307-7416615(+)$1	308	181	205	23.7026
gcccccctttttttttttccc]cc	chr16:223483-223693(+)$1	210	93	117	22.3138
eeeeyyyyyyyyyyyyyyyyeeee	chr7:75933385-75933652(+)$1	267	183	207	22.8290
a[ddddvvvvvvvvvvvvvdddd]	chr6:33383624-33383900(+)$1	276	78	102	23.6415
ddd[bbuuuuuuuuuuuubbdddd	chr16:28846868-28847136(+)$1	268	146	170	23.0125
!!dddduuuuuuuuuuuuddddee	chr16:56643115-56643380(+)$1	265	79	103	24.3864
$$ddddtttttttttttdddd444	chrX:47445976-47446237(+)$1	261	171	195	22.2855
ggggggwwwwwwwwwwwwwwgggg	chr19:34887384-34887651(+)$1	267	96	120	21.9431
""ddddtttttttttttddddggg	chr10:81928745-81929038(-)$1	293	59	83	22.8343
$$$cccuuuuuuuuuuuuccc666	chrX:47074211-47074534(+)$1	323	142	166	21.4544
ddd:ccctttttttttttcccddd	chr6:30691485-30691723(+)$1	238	65	89	21.2617
cc[cccvvvvvvvvvvvvvccccc	chr17:73898000-73898275(-)$1	275	219	243	22.9368
ggggggvvvvvvvvvvvvvggggg	chr5:179227429-179227689(-)$1	260	229	253	22.8679
ggggggvvvvvvvvvvvvvggggg	chr12:56558999-56559269(-)$1	270	30	54	22.8679
##dddduuuuuuuuuuuudddd44	chr6:34737965-34738215(+)$1	250	28	52	23.9395
deeeeevvvvvvvvvvvvveeeee	chr6:30691239-30691483(+)$1	244	133	157	23.6033
beeeeeuuuuuuuuuuuueeeee]	chr17:26900839-26901043(-)$1	204	127	151	23.5976
ffffffuuuuuuuuuuuuffffff	chr5:177020580-177020824(+)$1	244	112	136	21.8636
[ddddvvvvvvvvvvvvvdddd]e	chr11:67053755-67054030(+)$1	275	155	179	22.9345
!!ddddwwwwwwwwwwwwwwdddd	chr8:124219793-124220085(+)$1	292	181	205	22.8195
:eeeeewwwwwwwwwwwwwweeee	chr2:171822216-171822560(+)$1	344	253	277	21.9707
eee[bbuuuuuuuuuuuubbeeee	chr17:6917568-6917890(+)$1	322	157	181	23.5519
eeeeeauuuuuuuuuuuua]eeee	chr3:33906765-33907018(+)$1	253	73	97	24.2377
eeeeyyyyyyyyyyyyyyyyeeee	chr22:24109467-24109730(-)$1	263	181	205	22.8290
fffddddtttttttttttdddd44	chr3:47451486-47451741(+)$1	255	91	115	21.8301
%cccccctttttttttttccc]cc	chr1:54678071-54678343(+)$1	272	108	132	21.9164
ddddyyyyyyyyyyyyyyyydddd	chr1:8420259-8420555(-)$1	296	250	274	22.2796
eeeeeevvvvvvvvvvvvveeeee	chr5:139573962-139574295(+)$1	333	185	209	23.6395
ggggyyyyyyyyyyyyyyyygggg	chr10:81932462-81932725(-)$1	263	229	253	22.2083
""ddddtttttttttttdddd333	chr12:122617975-122618249(+)$1	274	225	249	22.8093
ffffffuuuuuuuuuuuuffffff	chr7:99704866-99705142(-)$1	276	196	220	21.8636
!!bbwwwwwwwwwwwwwwbbeeee	chr12:132635923-132636201(+)$1	278	71	95	21.3847
ffffyyyyyyyyyyyyyyyyffff	chrX:55035642-55035858(-)$1	216	32	56	21.3286
:ccc[attttttttttta]cccdd	chr6:31593268-31593486(+)$1	218	137	161	21.6256
!eeeeeuuuuuuuuuuuueeeee3	chr6:33384283-33384564(-)$1	281	213	237	24.0475
!!ddddtttttttttttdddd]ii	chr12:122617802-122618102(+)$1	300	219	243	22.9342
b[ddddvvvvvvvvvvvvvddddb	chr12:57066720-57066949(-)$1	229	44	68	23.0288
##ddddwwwwwwwwwwwwwwdddd	chr19:36211853-36212122(+)$1	269	154	178	22.6697
""ddddtttttttttttddddggg	chr10:81928838-81929105(-)$1	267	126	150	22.8343
:eeeeevvvvvvvvvvvvveeeee	chr8:145065418-145065641(+)$1	223	1	25	22.9168
[eeeeevvvvvvvvvvvvveeeee	chr11:64534334-64534597(-)$1	263	50	74	23.8498
ggggyyyyyyyyyyyyyyyygggg	chr1:8420959-8421266(-)$1	307	81	105	22.2083
ggggyyyyyyyyyyyyyyyygggg	chr5:138994200-138994460(+)$1	260	138	162	22.2083
ccyyyyyyyyyyyyyyyyccc]ee	chr19:13058938-13059222(+)$1	284	91	115	21.1294
eeeebbtttttttttttbb]eeee	chr16:30732466-30732744(+)$1	278	134	158	22.2373
======vvvvvvvvvvvvv=====	chr15:69747441-69747695(+)$1	254	14	38	23.1758
!cccwwwwwwwwwwwwwwccc]ff	chr19:18308097-18308398(-)$1	301	209	233	21.5982
eee[bbvvvvvvvvvvvvvbb]ee	chr11:61183542-61183832(-)$1	290	203	227	22.8408
[a[cccuuuuuuuuuuuuccc]a]	chrX:153589996-153590245(-)$1	249	195	219	23.6340
ggggggvvvvvvvvvvvvvggggg	chr3:33907764-33908131(+)$1	367	165	189	22.8679
:eeeeewwwwwwwwwwwwwweeee	chr4:119738329-119738602(-)$1	273	111	135	21.9707
:eeeeevvvvvvvvvvvvveeeee	chr9:110068625-110068920(+)$1	295	256	280	22.9168
eee[bbuuuuuuuuuuuubbeeee	chr17:6917499-6917768(+)$1	269	226	250	23.5519
eeeeeauuuuuuuuuuuua]eeee	chr3:33906683-33906965(+)$1	282	155	179	24.2377
=eeeeeuuuuuuuuuuuueeeee:	chr8:11695930-11696191(+)$1	261	131	155	22.8403
ddddyyyyyyyyyyyyyyyydddd	chr6:30691400-30691685(+)$1	285	207	231	22.2796
g[ddddtttttttttttdddd]gg	chr17:42153303-42153644(+)$1	341	303	327	22.7219
##dddduuuuuuuuuuuudddd22	chrX:153609202-153609536(+)$1	334	293	317	23.5608
ddd[bbuuuuuuuuuuuubb]ddd	chr17:80046870-80047142(-)$1	272	188	212	22.7730
c[ddddvvvvvvvvvvvvvddddc	chr19:36212055-36212342(+)$1	287	42	66	23.5565

#otherMatches

#Seq PSSM
AUGUGGACUCUUUAUUUUUCCUUA	chr22:22892058-22892280(-)$1	222	84	108	22.0392
UCACAGAAAUAGCAACCCUGUCAU	chr1:28793024-28793281(+)$1	257	229	253	22.4767
CUUCGCCACCCAGUUUUCGGUAAG	chr1:8416115-8416410(-)$1	295	232	256	22.2135
AGCCCAGACCUCCUGACCCUGGGA	chrX:48650350-48650594(+)$1	244	103	127	22.0798
CCCAUCAAGUAUACCCCAGAGGAG	chr17:26900984-26901251(-)$1	267	88	112	21.5750
GGUGCCUGCCCCCUUCUCCCCACC	chr1:33236653-33236962(+)$1	309	121	145	22.8290
GCAGCCCCUCUCCUUUCUCUGGCU	chr17:40947118-40947474(+)$1	356	78	102	20.3903
gguugcuaccucuuacccgucccc	chr5:137803364-137803721(+)$1	357	108	132	22.2119
UAUAGUCCCACAUcacccagcuau	chr17:7416307-7416615(+)$1	308	181	205	23.7026
UGCUGACCUCCAAAUACCGUUAAG	chr16:223483-223693(+)$1	210	93	117	22.3138
UUAUCUUCUGUUUUUCUCAAAUAA	chr7:75933385-75933652(+)$1	267	183	207	22.8290
CAGCACCCCCUUCUCCCCUGUGCC	chr6:33383624-33383900(+)$1	276	78	102	23.6415
CUGUGUAUGCCAUCCACCACCAGC	chr16:28846868-28847136(+)$1	268	146	170	23.0125
GUGGGCUGUGCCAAGUGUGCCCAG	chr16:56643115-56643380(+)$1	265	79	103	24.3864
UCUUUCUUCCGGACAAUGAAAUAA	chrX:47445976-47446237(+)$1	261	171	195	22.2855
CACAGGCACCAAGAUGAUACCCUG	chr19:34887384-34887651(+)$1	267	96	120	21.9431
UAUGGGAUGUAUCCACCCCCAGGA	chr10:81928745-81929038(-)$1	293	59	83	22.8343
CCUUGUCCACCCCUCUCCACACCC	chrX:47074211-47074534(+)$1	323	142	166	21.4544
ACCUGCCUCCGUUUCCCUGGCCAG	chr6:30691485-30691723(+)$1	238	65	89	21.2617
GGUGUGUCCCUGCCCCCCCCACCC	chr17:73898000-73898275(-)$1	275	219	243	22.9368
UCAGCAACCCGCCUGCCUGUGCUG	chr5:179227429-179227689(-)$1	260	229	253	22.8679
GGGCCCCUCCAGGAAGUUUGGGCC	chr12:56558999-56559269(-)$1	270	30	54	22.8679
cgucucaaaaaaaaagaagagaaa	chr6:34737965-34738215(+)$1	250	28	52	23.9395
CGUGGUCGAGCCCUACAAUGCCAC	chr6:30691239-30691483(+)$1	244	133	157	23.6033
AGGCAUCAUUCAACCUCAAUGCCA	chr17:26900839-26901043(-)$1	204	127	151	23.5976
UUCACUUCCCAUACCCCUGGUGAG	chr5:177020580-177020824(+)$1	244	112	136	21.8636
UGGCGCACCCUCCCCUCCCGUCUA	chr11:67053755-67054030(+)$1	275	155	179	22.9345
CCUGAGACCCAAAGACCCACCUCA	chr8:124219793-124220085(+)$1	292	181	205	22.8195
CCUGCCACAACUACUGCAAAGGCA	chr2:171822216-171822560(+)$1	344	253	277	21.9707
AGACUGAAUCCCUUCUCCCAUCUC	chr17:6917568-6917890(+)$1	322	157	181	23.5519
GCCAGCUCCAUCACAAACGCCUGG	chr3:33906765-33907018(+)$1	253	73	97	24.2377
GUCCAAGAGAAACUGAGGCAGGAU	chr22:24109467-24109730(-)$1	263	181	205	22.8290
GGAAGUGCCACCCCGCUCCACUUU	chr3:47451486-47451741(+)$1	255	91	115	21.8301
AGGAAGGCUAUCCUUACCCCUAUC	chr1:54678071-54678343(+)$1	272	108	132	21.9164
CUCCCCACCGUCCAGAUCAAGGAG	chr1:8420259-8420555(-)$1	296	250	274	22.2796
GACCCUACCCACCUCCUCAAGGGU	chr5:139573962-139574295(+)$1	333	185	209	23.6395
GGAGAACAGUAGUUUCCUCACUCC	chr10:81932462-81932725(-)$1	263	229	253	22.2083
ACCUUCCAUCAGCCACAGAAGUUU	chr12:122617975-122618249(+)$1	274	225	249	22.8093
AGUCCCCCUCCAGCUCCAGGGACU	chr7:99704866-99705142(-)$1	276	196	220	21.8636
CCGGGCCCUGUCUCACAACCACUG	chr12:132635923-132636201(+)$1	278	71	95	21.3847
AAGAUCUAGUCUAACCCAUUUUUU	chrX:55035642-55035858(-)$1	216	32	56	21.3286
GUCUUGGAACGAUUACACUGGAAG	chr6:31593268-31593486(+)$1	218	137	161	21.6256
CCCCAAUAAAUCCCGUCUUUGGGU	chr6:33384283-33384564(-)$1	281	213	237	24.0475
ACCCGUUUAUCCAGCCCACGGACU	chr12:122617802-122618102(+)$1	300	219	243	22.9342
GUGAAUGUUUAGUUAAUGAAUUCC	chr12:57066720-57066949(-)$1	229	44	68	23.0288
CCAACUCCUCCAUCUACCCCAGUU	chr19:36211853-36212122(+)$1	269	154	178	22.6697
UAUGGGAUGUAUCCACCCCCAGGA	chr10:81928838-81929105(-)$1	267	126	150	22.8343
CUGGGGACAACUAUCCUCCCCCCA	chr8:145065418-145065641(+)$1	223	1	25	22.9168
GAUGCCGCCACCACCUAUGGGCAU	chr11:64534334-64534597(-)$1	263	50	74	23.8498
UGUUCCCCACACCCACAUCCAACA	chr1:8420959-8421266(-)$1	307	81	105	22.2083
UACCCCUUCAAACCACCUAAGGUA	chr5:138994200-138994460(+)$1	260	138	162	22.2083
UCACCCACAGCUGCCCCAGAGUCC	chr19:13058938-13059222(+)$1	284	91	115	21.1294
CCUGAGCCCAGCCCCACCUCCAGG	chr16:30732466-30732744(+)$1	278	134	158	22.2373
UGCUUAACAAGGACAGAACUGGGC	chr15:69747441-69747695(+)$1	254	14	38	23.1758
CAAGACCCCUGCUCCUGACUUAGC	chr19:18308097-18308398(-)$1	301	209	233	21.5982
CCUCCACCAGAUACUUACAUGAAG	chr11:61183542-61183832(-)$1	290	203	227	22.8408
GGCCUGGGAGAGAGUAAGUAGUUG	chrX:153589996-153590245(-)$1	249	195	219	23.6340
UCCUGGACAGGCUCCAUACCCGGG	chr3:33907764-33908131(+)$1	367	165	189	22.8679
CCAGGUCCUAUAUCCACUUCAUCU	chr4:119738329-119738602(-)$1	273	111	135	21.9707
AAGCCAGCAGAGACACCAGUGGCU	chr9:110068625-110068920(+)$1	295	256	280	22.9168
AGACUGAAUCCCUUCUCCCAUCUC	chr17:6917499-6917768(+)$1	269	226	250	23.5519
GCCAGCUCCAUCACAAACGCCUGG	chr3:33906683-33906965(+)$1	282	155	179	24.2377
UACCUGACCACUCUCUCCCAGGUA	chr8:11695930-11696191(+)$1	261	131	155	22.8403
AUGGUCCCCUUCCCACGUCUCCAU	chr6:30691400-30691685(+)$1	285	207	231	22.2796
UCCUCUCAAGCCCCCAAAGAGCAA	chr17:42153303-42153644(+)$1	341	303	327	22.7219
UUGUGAUCGUCCUCUUCUUCAUUU	chrX:153609202-153609536(+)$1	334	293	317	23.5608
CCGAGUACAAUGUCAACAACCUGG	chr17:80046870-80047142(-)$1	272	188	212	22.7730
GAGCUGcccccuccucccccagcc	chr19:36212055-36212342(+)$1	287	42	66	23.5565

#DB
(...(((...........))).))	chr22:22892058-22892280(-)$1	1	84	108	22.0392
..((((...........))))..)	chr1:28793024-28793281(+)$1	1	229	253	22.4767
(((.(((...........))))))	chr1:8416115-8416410(-)$1	1	232	256	22.2135
..(((((...........))))).	chrX:48650350-48650594(+)$1	1	103	127	22.0798
(((.((............)))).)	chr17:26900984-26901251(-)$1	1	88	112	21.5750
((((................))))	chr1:33236653-33236962(+)$1	1	121	145	22.8290
((((((..............))))	chr17:40947118-40947474(+)$1	1	78	102	20.3903
((..((............))..))	chr5:137803364-137803721(+)$1	1	108	132	22.2119
)(((((.............)))))	chr17:7416307-7416615(+)$1	1	181	205	23.7026
)((((((...........))).))	chr16:223483-223693(+)$1	1	93	117	22.3138
((((................))))	chr7:75933385-75933652(+)$1	1	183	207	22.8290
(.((((.............)))).	chr6:33383624-33383900(+)$1	1	78	102	23.6415
(((.((............))))))	chr16:28846868-28847136(+)$1	1	146	170	23.0125
..((((............))))))	chr16:56643115-56643380(+)$1	1	79	103	24.3864
..((((...........))))...	chrX:47445976-47446237(+)$1	1	171	195	22.2855
((((((..............))))	chr19:34887384-34887651(+)$1	1	96	120	21.9431
..((((...........)))))))	chr10:81928745-81929038(-)$1	1	59	83	22.8343
...(((............)))...	chrX:47074211-47074534(+)$1	1	142	166	21.4544
))).(((...........)))(((	chr6:30691485-30691723(+)$1	1	65	89	21.2617
((.(((.............)))))	chr17:73898000-73898275(-)$1	1	219	243	22.9368
((((((.............)))))	chr5:179227429-179227689(-)$1	1	229	253	22.8679
((((((.............)))))	chr12:56558999-56559269(-)$1	1	30	54	22.8679
..((((............))))..	chr6:34737965-34738215(+)$1	1	28	52	23.9395
)(((((.............)))))	chr6:30691239-30691483(+)$1	1	133	157	23.6033
((((((............))))).	chr17:26900839-26901043(-)$1	1	127	151	23.5976
((((((............))))))	chr5:177020580-177020824(+)$1	1	112	136	21.8636
.((((.............)))).)	chr11:67053755-67054030(+)$1	1	155	179	22.9345
..((((..............))))	chr8:124219793-124220085(+)$1	1	181	205	22.8195
.(((((..............))))	chr2:171822216-171822560(+)$1	1	253	277	21.9707
(((.((............))))))	chr17:6917568-6917890(+)$1	1	157	181	23.5519
((((((............).))))	chr3:33906765-33907018(+)$1	1	73	97	24.2377
((((................))))	chr22:24109467-24109730(-)$1	1	181	205	22.8290
(((((((...........))))..	chr3:47451486-47451741(+)$1	1	91	115	21.8301
.((((((...........))).))	chr1:54678071-54678343(+)$1	1	108	132	21.9164
((((................))))	chr1:8420259-8420555(-)$1	1	250	274	22.2796
((((((.............)))))	chr5:139573962-139574295(+)$1	1	185	209	23.6395
((((................))))	chr10:81932462-81932725(-)$1	1	229	253	22.2083
..((((...........))))...	chr12:122617975-122618249(+)$1	1	225	249	22.8093
((((((............))))))	chr7:99704866-99705142(-)$1	1	196	220	21.8636
..((..............))))))	chr12:132635923-132636201(+)$1	1	71	95	21.3847
((((................))))	chrX:55035642-55035858(-)$1	1	32	56	21.3286
.(((.(...........).)))((	chr6:31593268-31593486(+)$1	1	137	161	21.6256
.(((((............))))).	chr6:33384283-33384564(-)$1	1	213	237	24.0475
..((((...........)))).))	chr12:122617802-122618102(+)$1	1	219	243	22.9342
(.((((.............)))))	chr12:57066720-57066949(-)$1	1	44	68	23.0288
..((((..............))))	chr19:36211853-36212122(+)$1	1	154	178	22.6697
..((((...........)))))))	chr10:81928838-81929105(-)$1	1	126	150	22.8343
.(((((.............)))))	chr8:145065418-145065641(+)$1	1	1	25	22.9168
.(((((.............)))))	chr11:64534334-64534597(-)$1	1	50	74	23.8498
((((................))))	chr1:8420959-8421266(-)$1	1	81	105	22.2083
((((................))))	chr5:138994200-138994460(+)$1	1	138	162	22.2083
((................))).))	chr19:13058938-13059222(+)$1	1	91	115	21.1294
((((((...........)).))))	chr16:30732466-30732744(+)$1	1	134	158	22.2373
((((((.............)))))	chr15:69747441-69747695(+)$1	1	14	38	23.1758
.(((..............))).))	chr19:18308097-18308398(-)$1	1	209	233	21.5982
(((.((.............)).))	chr11:61183542-61183832(-)$1	1	203	227	22.8408
.(.(((............))).).	chrX:153589996-153590245(-)$1	1	195	219	23.6340
((((((.............)))))	chr3:33907764-33908131(+)$1	1	165	189	22.8679
.(((((..............))))	chr4:119738329-119738602(-)$1	1	111	135	21.9707
.(((((.............)))))	chr9:110068625-110068920(+)$1	1	256	280	22.9168
(((.((............))))))	chr17:6917499-6917768(+)$1	1	226	250	23.5519
((((((............).))))	chr3:33906683-33906965(+)$1	1	155	179	24.2377
)(((((............))))).	chr8:11695930-11696191(+)$1	1	131	155	22.8403
((((................))))	chr6:30691400-30691685(+)$1	1	207	231	22.2796
(.((((...........)))).))	chr17:42153303-42153644(+)$1	1	303	327	22.7219
..((((............))))..	chrX:153609202-153609536(+)$1	1	293	317	23.5608
(((.((............)).)))	chr17:80046870-80047142(-)$1	1	188	212	22.7730
(.((((.............)))))	chr19:36212055-36212342(+)$1	1	42	66	23.5565

#PSSM
e : 0.14	g : 0.13	d : 0.10	c : 0.08	! : 0.08	f : 0.07	: : 0.07	" : 0.05	$ : 0.04	# : 0.04	[ : 0.04	b : 0.02	= : 0.02	D : 0.01	a : 0.01	% : 0.01	
e : 0.29	c : 0.10	d : 0.10	g : 0.10	" : 0.07	[ : 0.05	! : 0.05	f : 0.05	$ : 0.04	# : 0.04	b : 0.01	D : 0.01	= : 0.01	a : 0.01	
d : 0.32	e : 0.30	g : 0.10	c : 0.07	f : 0.05	b : 0.02	[ : 0.02	" : 0.01	! : 0.01	$ : 0.01	y : 0.01	= : 0.01	
d : 0.29	e : 0.26	[ : 0.10	c : 0.10	g : 0.10	f : 0.04	" : 0.01	! : 0.01	: : 0.01	b : 0.01	y : 0.01	= : 0.01	
d : 0.26	e : 0.20	y : 0.14	c : 0.11	b : 0.11	g : 0.05	f : 0.02	w : 0.02	[ : 0.01	= : 0.01	
d : 0.25	e : 0.17	y : 0.14	c : 0.11	b : 0.11	g : 0.05	a : 0.04	f : 0.02	w : 0.02	v : 0.01	= : 0.01	
u : 0.26	v : 0.23	y : 0.14	t : 0.13	w : 0.11	c : 0.07	e : 0.01	d : 0.01	
u : 0.26	t : 0.23	v : 0.23	y : 0.14	w : 0.11	
u : 0.26	t : 0.23	v : 0.23	y : 0.14	w : 0.11	
u : 0.26	t : 0.23	v : 0.23	y : 0.14	w : 0.11	
u : 0.26	t : 0.23	v : 0.23	y : 0.14	w : 0.11	
u : 0.26	t : 0.23	v : 0.23	y : 0.14	w : 0.11	
u : 0.26	t : 0.23	v : 0.23	y : 0.14	w : 0.11	
u : 0.26	t : 0.23	v : 0.23	y : 0.14	w : 0.11	
u : 0.26	t : 0.23	v : 0.23	y : 0.14	w : 0.11	
u : 0.26	t : 0.23	v : 0.23	y : 0.14	w : 0.11	
u : 0.26	t : 0.23	v : 0.23	y : 0.14	w : 0.11	
u : 0.26	v : 0.23	y : 0.14	w : 0.11	t : 0.10	d : 0.10	a : 0.01	b : 0.01	
v : 0.22	d : 0.17	c : 0.13	y : 0.13	b : 0.11	w : 0.08	e : 0.05	f : 0.02	a : 0.02	] : 0.01	
d : 0.22	c : 0.16	e : 0.14	y : 0.13	b : 0.11	w : 0.08	g : 0.04	] : 0.04	f : 0.02	= : 0.01	
d : 0.30	e : 0.30	c : 0.16	g : 0.10	f : 0.04	b : 0.02	2 : 0.01	= : 0.01	] : 0.01	
e : 0.30	d : 0.23	] : 0.13	g : 0.13	c : 0.04	f : 0.04	2 : 0.02	b : 0.01	4 : 0.01	6 : 0.01	3 : 0.01	= : 0.01	
e : 0.35	d : 0.19	g : 0.14	f : 0.07	c : 0.05	4 : 0.04	2 : 0.02	] : 0.02	6 : 0.01	3 : 0.01	i : 0.01	= : 0.01	a : 0.01	
e : 0.32	d : 0.14	g : 0.14	c : 0.08	f : 0.07	] : 0.04	4 : 0.04	2 : 0.02	3 : 0.02	6 : 0.01	i : 0.01	b : 0.01	= : 0.01	: : 0.01	

#score	1540.9792499042646
#seq	68
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF545FMX_NPM1_UTR_m2_run1.txt

#BEAR
:bb[bbvvvvvvvvvvvvvbb	chr4:174252984-174253324(-)$1	340	0	21	24.2517
hhhhhhvvvvvvvvvvvvvhh	chr9:100777544-100777870(+)$1	326	234	255	24.7008
gggggggtttttttttttggg	chr2:61764756-61765004(-)$1	248	52	73	21.8534
ffffffwwwwwwwwwwwwwwf	chr11:618790-619008(-)$1	218	35	56	22.3392

#otherMatches

#Seq PSSM
AGGCUCAaagaagaagaacga	chr4:174252984-174253324(-)$1	340	0	21	24.2517
CUGUUUAAAAAAAAAAAAAAG	chr9:100777544-100777870(+)$1	326	234	255	24.7008
CCCCAGAUUAAUUCCCCUUUU	chr2:61764756-61765004(-)$1	248	52	73	21.8534
CCCACCAACCAGCCACUCCCG	chr11:618790-619008(-)$1	218	35	56	22.3392

#DB
.((.((.............))	chr4:174252984-174253324(-)$1	1	0	21	24.2517
((((((.............))	chr9:100777544-100777870(+)$1	1	234	255	24.7008
(((((((...........)))	chr2:61764756-61765004(-)$1	1	52	73	21.8534
((((((..............)	chr11:618790-619008(-)$1	1	35	56	22.3392

#PSSM
: : 0.25	h : 0.25	g : 0.25	f : 0.25	
b : 0.25	h : 0.25	g : 0.25	f : 0.25	
b : 0.25	h : 0.25	g : 0.25	f : 0.25	
[ : 0.25	h : 0.25	g : 0.25	f : 0.25	
b : 0.25	h : 0.25	g : 0.25	f : 0.25	
b : 0.25	h : 0.25	g : 0.25	f : 0.25	
v : 0.50	g : 0.25	w : 0.25	
v : 0.50	t : 0.25	w : 0.25	
v : 0.50	t : 0.25	w : 0.25	
v : 0.50	t : 0.25	w : 0.25	
v : 0.50	t : 0.25	w : 0.25	
v : 0.50	t : 0.25	w : 0.25	
v : 0.50	t : 0.25	w : 0.25	
v : 0.50	t : 0.25	w : 0.25	
v : 0.50	t : 0.25	w : 0.25	
v : 0.50	t : 0.25	w : 0.25	
v : 0.50	t : 0.25	w : 0.25	
v : 0.50	t : 0.25	w : 0.25	
v : 0.50	g : 0.25	w : 0.25	
b : 0.25	h : 0.25	g : 0.25	w : 0.25	
b : 0.25	h : 0.25	g : 0.25	f : 0.25	

#score	93.14527761715004
#seq	4
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF958EFT_PHF6_transcript_m3_run2.txt

#BEAR
""ccc!!bbeeeeeqqqqqqqqeeeee]bb3	chr19:48259010-48259223(+)$1	213	18	49	14.5998
==========!!aqqqqqqqqa22=======	chr22:50023665-50023891(-)$1	226	80	111	17.2932
ggggg!!eeeeesssssssssseeeee22gg	chr11:93454734-93454983(+)$1	249	213	244	11.8781
iiiiii[a!!cccqqqqqqqqccc333a]ii	chr22:50037511-50037756(-)$1	245	96	127	17.0358
ddd[bb[ffffffqqqqqqqqffffff]bb]	chrX:153589595-153589864(-)$1	269	70	101	15.0933
ddd[dddd[eeeeeqqqqqqqqeeeeedddd	chr19:3360633-3360893(+)$1	260	15	46	14.6191
eeeee"""eeeeeqqqqqqqqeeeee333ee	chr19:1409876-1410155(+)$1	279	160	191	16.5501
ddffffff[bbbbqqqqqqqqbb]bbfffff	chr22:50024771-50025014(-)$1	243	28	59	12.6396
a!!dddd[eeeeeqqqqqqqqeeeee]dddd	chr11:65194874-65195094(+)$1	220	114	145	16.8559
"""dddd[cccqqqqqqqqccc22dddd333	chr1:28905184-28905419(-)$1	235	185	216	11.7586
gg[ccc!!eeeeeqqqqqqqqeeeee333cc	chr22:50033471-50033730(-)$1	259	172	203	17.6746
eeee[ccc[ddddqqqqqqqqddddccc444	chr9:139561881-139562132(+)$1	251	3	34	15.7041
ccc[ddddeeeeeqqqqqqqqeeeee]dddd	chr9:139621187-139621400(-)$1	213	150	181	16.6355
##dddd[ccc[bbqqqqqqqqbb]cccdddd	chr5:176916992-176917261(-)$1	269	185	216	15.3760
c!!bb!!eeeeesssssssssseeeee]bb2	chr9:136135742-136136022(-)$1	280	187	218	11.1813
b[a[dddd[ddddqqqqqqqqdddd]dddd]	chr11:63743596-63743845(+)$1	249	45	76	15.8597
dddcccdddd[cccqqqqqqqqcccdddd55	chr12:7076413-7076626(-)$1	213	161	192	12.2415
ggg[cccffffffqqqqqqqqffffff>>>>	chr2:97525789-97526033(-)$1	244	130	161	15.2921
cdddd[gggggggqqqqqqqqggggggg]dd	chr1:173835361-173835578(-)$1	217	149	180	16.3141
=====ccc[cccqqqqqqqqccc]ccc]===	chr2:203142758-203142995(+)$1	237	166	197	15.5179
"""dddd[eeeeeqqqqqqqqeeeee]dddd	chr13:114562977-114563229(-)$1	252	40	71	16.7365
!!a"""gggggggssssssssssggggggga	chr19:34876751-34877036(+)$1	285	197	228	11.3573
hh[==========qqqqqqqq==========	chr1:228331692-228331943(+)$1	251	78	109	17.3939
fff[dddd[ddddqqqqqqqqdddddddd]f	chr19:1411985-1412241(+)$1	256	155	186	15.2067
========eeeeeqqqqqqqqeeeee::ddd	chr1:22155800-22156052(-)$1	252	199	230	15.5110
ff::iiiiiiiiiqqqqqqqqiiiiiiiiiF	chr3:128215242-128215491(+)$1	249	168	199	13.9137
bb[ccc[ffffffqqqqqqqqffffffccc]	chr19:1420418-1420656(+)$1	238	188	219	15.6927
hhhhhh!!eeeeeqqqqqqqqeeeee22hhh	chr19:1416432-1416664(+)$1	232	166	197	15.4217
hhhhhhgggggggqqqqqqqqggggggg:cc	chr19:2201463-2201729(+)$1	266	72	103	14.7071
))))dddd[cccqqqqqqqqccc]ddddccc	chr1:45242062-45242268(+)$1	206	47	78	12.3754
ggggggg!!ddddqqqqqqqqdddd22gggg	chr17:38183717-38183961(-)$1	244	183	214	15.9278
ggggg!!ffffffqqqqqqqqffffffgggg	chr19:1413323-1413582(+)$1	259	42	73	16.2372
dddccc[ccc!!aqqqqqqqqa22ccc]ccc	chr1:2160892-2161165(+)$1	273	220	251	15.9452
&&&&ggggggg[aqqqqqqqqaggggggg==	chr9:136216198-136216408(+)$1	210	49	80	14.4129
iiiiiiiiwwwwwwwwwwwwwwiiiiiiiii	chr5:138614432-138614639(+)$1	207	1	32	11.8987
gggggg"""ddddqqqqqqqqddddgggggg	chr19:4033476-4033760(+)$1	284	234	265	16.3861
ddd[dddd[ddddqqqqqqqqdddd]ddddd	chrX:152956442-152956714(+)$1	272	91	122	15.6004
cccdddd[eeeeeqqqqqqqqeeeee4444d	chr16:89360382-89360627(-)$1	245	116	147	16.6868
dddddd[bb[cccqqqqqqqqccc]bbdddd	chr2:97559836-97560087(-)$1	251	143	174	14.9904
eedddd[ffffffqqqqqqqqffffff]ddd	chr19:4035486-4035723(+)$1	237	79	110	15.6405
ggggg!!ffffffqqqqqqqqffffffgggg	chr19:1413271-1413514(+)$1	243	94	125	16.2372
::a[a[dddd[bbqqqqqqqqbb]dddd]a]	chr1:109642821-109643028(+)$1	207	2	33	13.2515
=============qqqqqqqq==========	chr11:129871619-129871938(-)$1	319	87	118	17.8625
bbccc[gggggggqqqqqqqqgggggggccc	chr21:9826125-9826351(+)$1	226	27	58	16.1855
eee[ccc"""cccqqqqqqqqcccccceeee	chr19:52729134-52729495(+)$1	361	77	108	15.7544
============ssssssssss=========	chr19:1423660-1423920(+)$1	260	168	199	12.8476
gg$$$$$eeeeesssssssssseeeee4444	chr11:5275532-5275800(-)$1	268	86	117	10.8886
e4444cccbbcccqqqqqqqqccc]bb:ddd	chr11:583817-584062(+)$1	245	146	177	13.1794
iiiiiiibb[ddddqqqqqqqqdddd22bb6	chr16:88961299-88961527(-)$1	228	3	34	13.0936

#otherMatches

#Seq PSSM
AUCGACGUGCAGCUGAGCUCGGAGCUGACAG	chr19:48259010-48259223(+)$1	213	18	49	14.5998
GGUCUCCUCUGGGGACUGAAGCAGGGAGGAG	chr22:50023665-50023891(-)$1	226	80	111	17.2932
AGCCUAAUCAUUUCUGGGCAAUGAUGAAAAG	chr11:93454734-93454983(+)$1	249	213	244	11.8781
CCAUGGGUGGAGGGAGGUGAGCCUGAAGGCU	chr22:50037511-50037756(-)$1	245	96	127	17.0358
UGGUGCGCUUCCUGCCCCGUGAGGAAGGGCC	chrX:153589595-153589864(-)$1	269	70	101	15.0933
UGCUGGCGCGUGUUGUGUUGUGAGCGCCGCC	chr19:3360633-3360893(+)$1	260	15	46	14.6191
UGUGGCCGUCCAGCUGCUGCCCUGGGAAUCC	chr19:1409876-1410155(+)$1	279	160	191	16.5501
UUCCAGAACUGCUAAUUACAAGGACAUUUUG	chr22:50024771-50025014(-)$1	243	28	59	12.6396
CGUGUACACUACUGACAAACGGGUGGAGUGC	chr11:65194874-65195094(+)$1	220	114	145	16.8559
AUCUGGGAAUUAGUAACACAAUGGCUUACAC	chr1:28905184-28905419(-)$1	235	185	216	11.7586
GGCUCCCUGGGAAAAGCUUGAUUCCCCCUGG	chr22:50033471-50033730(-)$1	259	172	203	17.6746
GCAUUGCCACAGACCAUUAAUUCUGGGCUCU	chr9:139561881-139562132(+)$1	251	3	34	15.7041
ACGCUCAGCGUUCUGCCCCGUGAACGUUUGA	chr9:139621187-139621400(-)$1	213	150	181	16.6355
CCCAGGAGCUGCCUCAGAAGCGGGAGCCCUG	chr5:176916992-176917261(-)$1	269	185	216	15.3760
cuucccugcaucucuggcaguugaugcuggc	chr9:136135742-136136022(-)$1	280	187	218	11.1813
GAGAGCCUAGGGGAAUACUGACUCCGAGGUG	chr11:63743596-63743845(+)$1	249	45	76	15.8597
AGGACAGGGCCAGGGAUUGAGACCUGCCCUU	chr12:7076413-7076626(-)$1	213	161	192	12.2415
ACCCCCACUGCCCCGAGUGUCGGGCAGCGAU	chr2:97525789-97526033(-)$1	244	130	161	15.2921
GUGGUUUGCUGUUAAUGGUUAAGCAGUGUAC	chr1:173835361-173835578(-)$1	217	149	180	16.3141
UUCACCAUAGGGCUGGUUUUCCCCAUGUGUG	chr2:203142758-203142995(+)$1	237	166	197	15.5179
UGUGGCCAGGCCUGUGCUCCGAGGCCAGGUU	chr13:114562977-114563229(-)$1	252	40	71	16.7365
AGGUAUGGUCUGAGGAGCCAGGGUCAGACUC	chr19:34876751-34877036(+)$1	285	197	228	11.3573
auuuguguguguguuugugugugcaugcaug	chr1:228331692-228331943(+)$1	251	78	109	17.3939
CAGCAGCGCGUUCCAGUUCACGGACCGCUCC	chr19:1411985-1412241(+)$1	256	155	186	15.2067
GGGGCUCUGCACACCAAGCCUUGUGCCCCCC	chr1:22155800-22156052(-)$1	252	199	230	15.5110
GCGAAGAUAAUGAAUAGCCAGUCGUUAUCUG	chr3:128215242-128215491(+)$1	249	168	199	13.9137
GGGAAGUGGUGCCCAGGAGCAGGCGCCCUUG	chr19:1420418-1420656(+)$1	238	188	219	15.6927
UGACUCAAGGUGGCACAGUCCCCAUUGGGAG	chr19:1416432-1416664(+)$1	232	166	197	15.4217
UUCCUAGGUUCGCUCUCCUGUGUGAACUUCC	chr19:2201463-2201729(+)$1	266	72	103	14.7071
UUUACAGAGGCUUAAUUUUCAGCAUUUGGGG	chr1:45242062-45242268(+)$1	206	47	78	12.3754
CCCAGACACGGGCUCCCCCCUGCCCUCGUCU	chr17:38183717-38183961(-)$1	244	183	214	15.9278
CCGGCUUCUCACUCACGACCUGGUGAGGUUG	chr19:1413323-1413582(+)$1	259	42	73	16.2372
GCCUGGACGACGUGAAGGAGAAAUUCGACUA	chr1:2160892-2161165(+)$1	273	220	251	15.9452
GUGUGCAGAUGAUGUAAAAGAAUAUUUGCUA	chr9:136216198-136216408(+)$1	210	49	80	14.4129
CUGAAACAAAUAAUGAGAAAGCUGUUUCAGG	chr5:138614432-138614639(+)$1	207	1	32	11.8987
gaaaccccgggcugcgaaaagagccgguuuc	chr19:4033476-4033760(+)$1	284	234	265	16.3861
UCUGCCUUGGGUCUAGGGGGCGGCUGGAGGA	chrX:152956442-152956714(+)$1	272	91	122	15.6004
GACCCUGAGGCUCAGGCCCUGGAGCCCACCC	chr16:89360382-89360627(-)$1	245	116	147	16.6868
gaggCCACAGUUCAUAAGGUAGAGGUGGGUC	chr2:97559836-97560087(-)$1	251	143	174	14.9904
CAUGGGCGUGGGGAGCCCGCACUCUGCUCCC	chr19:4035486-4035723(+)$1	237	79	110	15.6405
CCGGCUUCUCACUCACGACCUGGUGAGGUUG	chr19:1413271-1413514(+)$1	243	94	125	16.2372
AGGGAGAGCGGCCUGGGUCCUGGGUGUUGUG	chr1:109642821-109643028(+)$1	207	2	33	13.2515
ggcccgcAGGGGUGUGGGGUGGCCCCUGCGG	chr11:129871619-129871938(-)$1	319	87	118	17.8625
CGGCGUCGGGGAGAGCCCGUCCUCCCCGCGU	chr21:9826125-9826351(+)$1	226	27	58	16.1855
UCCUAGUUCUGUCUCUCGCCUGAUGCUGGAA	chr19:52729134-52729495(+)$1	361	77	108	15.7544
CGCGUCCUGUCCUGUCCCGUGUGGACGGGAC	chr19:1423660-1423920(+)$1	260	168	199	12.8476
GUUCUUUGACAGCUUUGGCAACCUGUCCUCU	chr11:5275532-5275800(-)$1	268	86	117	10.8886
CUCAAGUGGCUACUGUGAUCUGUGUGUAGCA	chr11:583817-584062(+)$1	245	146	177	13.1794
UGGGGACGCAGCCCAGAAAGGGGGGCCGGCA	chr16:88961299-88961527(-)$1	228	3	34	13.0936

#DB
..(((..(((((((........))))).)).	chr19:48259010-48259223(+)$1	1	18	49	14.5998
((((((((((..(........)..)))))))	chr22:50023665-50023891(-)$1	1	80	111	17.2932
(((((..(((((..........)))))..))	chr11:93454734-93454983(+)$1	1	213	244	11.8781
((((((.(..(((........)))...).))	chr22:50037511-50037756(-)$1	1	96	127	17.0358
(((.((.((((((........)))))).)).	chrX:153589595-153589864(-)$1	1	70	101	15.0933
(((.((((.(((((........)))))))))	chr19:3360633-3360893(+)$1	1	15	46	14.6191
(((((...(((((........)))))...))	chr19:1409876-1410155(+)$1	1	160	191	16.5501
((((((((.((((........)).)))))))	chr22:50024771-50025014(-)$1	1	28	59	12.6396
(..((((.(((((........))))).))))	chr11:65194874-65195094(+)$1	1	114	145	16.8559
...((((.(((........)))..))))...	chr1:28905184-28905419(-)$1	1	185	216	11.7586
((.(((..(((((........)))))...))	chr22:50033471-50033730(-)$1	1	172	203	17.6746
((((.(((.((((........)))))))...	chr9:139561881-139562132(+)$1	1	3	34	15.7041
(((.(((((((((........))))).))))	chr9:139621187-139621400(-)$1	1	150	181	16.6355
..((((.(((.((........)).)))))))	chr5:176916992-176917261(-)$1	1	185	216	15.3760
(..((..(((((..........))))).)).	chr9:136135742-136136022(-)$1	1	187	218	11.1813
(.(.((((.((((........)))).)))).	chr11:63743596-63743845(+)$1	1	45	76	15.8597
((((((((((.(((........)))))))..	chr12:7076413-7076626(-)$1	1	161	192	12.2415
(((.(((((((((........))))))....	chr2:97525789-97526033(-)$1	1	130	161	15.2921
(((((.(((((((........))))))).))	chr1:173835361-173835578(-)$1	1	149	180	16.3141
((((((((.(((........))).))).)))	chr2:203142758-203142995(+)$1	1	166	197	15.5179
...((((.(((((........))))).))))	chr13:114562977-114563229(-)$1	1	40	71	16.7365
..(...(((((((..........))))))))	chr19:34876751-34877036(+)$1	1	197	228	11.3573
((.((((((((((........))))))))))	chr1:228331692-228331943(+)$1	1	78	109	17.3939
(((.((((.((((........)))))))).)	chr19:1411985-1412241(+)$1	1	155	186	15.2067
))))))))(((((........)))))..(((	chr1:22155800-22156052(-)$1	1	199	230	15.5110
))..(((((((((........))))))))))	chr3:128215242-128215491(+)$1	1	168	199	13.9137
((.(((.((((((........))))))))).	chr19:1420418-1420656(+)$1	1	188	219	15.6927
((((((..(((((........)))))..)))	chr19:1416432-1416664(+)$1	1	166	197	15.4217
))))))(((((((........))))))).((	chr19:2201463-2201729(+)$1	1	72	103	14.7071
....((((.(((........))).)))))))	chr1:45242062-45242268(+)$1	1	47	78	12.3754
(((((((..((((........))))..))))	chr17:38183717-38183961(-)$1	1	183	214	15.9278
(((((..((((((........))))))))))	chr19:1413323-1413582(+)$1	1	42	73	16.2372
((((((.(((..(........)..))).)))	chr1:2160892-2161165(+)$1	1	220	251	15.9452
....(((((((.(........))))))))))	chr9:136216198-136216408(+)$1	1	49	80	14.4129
((((((((..............)))))))))	chr5:138614432-138614639(+)$1	1	1	32	11.8987
((((((...((((........))))))))))	chr19:4033476-4033760(+)$1	1	234	265	16.3861
(((.((((.((((........)))).)))))	chrX:152956442-152956714(+)$1	1	91	122	15.6004
(((((((.(((((........)))))....)	chr16:89360382-89360627(-)$1	1	116	147	16.6868
((((((.((.(((........))).))))))	chr2:97559836-97560087(-)$1	1	143	174	14.9904
((((((.((((((........)))))).)))	chr19:4035486-4035723(+)$1	1	79	110	15.6405
(((((..((((((........))))))))))	chr19:1413271-1413514(+)$1	1	94	125	16.2372
..(.(.((((.((........)).)))).).	chr1:109642821-109643028(+)$1	1	2	33	13.2515
(((((((((((((........))))))))))	chr11:129871619-129871938(-)$1	1	87	118	17.8625
(((((.(((((((........))))))))))	chr21:9826125-9826351(+)$1	1	27	58	16.1855
(((.(((...(((........))))))))))	chr19:52729134-52729495(+)$1	1	77	108	15.7544
((((((((((((..........)))))))))	chr19:1423660-1423920(+)$1	1	168	199	12.8476
((.....(((((..........)))))....	chr11:5275532-5275800(-)$1	1	86	117	10.8886
)....)))(((((........))).)).(((	chr11:583817-584062(+)$1	1	146	177	13.1794
(((((((((.((((........))))..)).	chr16:88961299-88961527(-)$1	1	3	34	13.0936

#PSSM
g : 0.16	d : 0.14	= : 0.10	e : 0.10	c : 0.08	" : 0.06	i : 0.06	b : 0.06	h : 0.06	f : 0.04	a : 0.02	# : 0.02	! : 0.02	) : 0.02	& : 0.02	: : 0.02	
g : 0.16	d : 0.16	= : 0.10	e : 0.08	" : 0.06	i : 0.06	! : 0.06	h : 0.06	c : 0.04	f : 0.04	b : 0.04	# : 0.02	[ : 0.02	) : 0.02	& : 0.02	: : 0.02	4 : 0.02	
d : 0.18	g : 0.12	= : 0.10	c : 0.08	i : 0.06	e : 0.06	[ : 0.06	a : 0.06	f : 0.04	! : 0.04	" : 0.04	h : 0.04	: : 0.02	) : 0.02	& : 0.02	$ : 0.02	4 : 0.02	
[ : 0.18	d : 0.16	c : 0.12	= : 0.12	g : 0.10	i : 0.06	e : 0.04	h : 0.04	f : 0.02	b : 0.02	" : 0.02	: : 0.02	) : 0.02	& : 0.02	$ : 0.02	4 : 0.02	
d : 0.28	c : 0.16	= : 0.12	g : 0.12	i : 0.08	b : 0.04	h : 0.04	e : 0.02	f : 0.02	[ : 0.02	" : 0.02	a : 0.02	$ : 0.02	4 : 0.02	
d : 0.26	c : 0.18	! : 0.10	= : 0.10	i : 0.08	[ : 0.06	g : 0.06	" : 0.04	h : 0.04	b : 0.02	f : 0.02	$ : 0.02	
d : 0.24	! : 0.14	[ : 0.14	g : 0.12	= : 0.10	c : 0.10	i : 0.06	" : 0.04	f : 0.02	$ : 0.02	
d : 0.16	f : 0.14	= : 0.10	c : 0.10	g : 0.10	[ : 0.08	b : 0.06	e : 0.06	" : 0.06	! : 0.06	i : 0.04	a : 0.02	
e : 0.22	[ : 0.16	f : 0.12	g : 0.10	b : 0.08	= : 0.08	c : 0.06	! : 0.04	d : 0.04	" : 0.04	i : 0.02	w : 0.02	
e : 0.26	d : 0.16	f : 0.12	c : 0.10	g : 0.10	= : 0.08	b : 0.04	[ : 0.04	! : 0.02	i : 0.02	w : 0.02	" : 0.02	
e : 0.26	c : 0.14	d : 0.14	f : 0.12	g : 0.10	[ : 0.06	= : 0.06	! : 0.04	b : 0.02	i : 0.02	w : 0.02	
e : 0.26	c : 0.14	d : 0.14	f : 0.12	g : 0.08	b : 0.06	= : 0.06	! : 0.04	q : 0.02	i : 0.02	[ : 0.02	w : 0.02	
e : 0.20	d : 0.14	f : 0.12	c : 0.10	s : 0.08	g : 0.08	a : 0.06	b : 0.06	q : 0.06	= : 0.04	i : 0.02	w : 0.02	
q : 0.79	s : 0.10	e : 0.04	c : 0.02	w : 0.02	d : 0.02	
q : 0.87	s : 0.10	w : 0.02	
q : 0.87	s : 0.10	w : 0.02	
q : 0.87	s : 0.10	w : 0.02	
q : 0.87	s : 0.10	w : 0.02	
q : 0.87	s : 0.10	w : 0.02	
q : 0.85	s : 0.10	c : 0.02	w : 0.02	
q : 0.81	s : 0.10	c : 0.06	w : 0.02	
e : 0.16	c : 0.14	f : 0.12	d : 0.12	s : 0.10	q : 0.08	a : 0.06	b : 0.06	g : 0.06	= : 0.04	i : 0.02	w : 0.02	
e : 0.26	c : 0.14	d : 0.14	f : 0.12	g : 0.08	2 : 0.06	b : 0.06	= : 0.06	i : 0.04	s : 0.02	
e : 0.26	d : 0.14	f : 0.12	c : 0.10	] : 0.10	g : 0.10	2 : 0.06	= : 0.06	i : 0.04	
e : 0.26	d : 0.20	f : 0.12	c : 0.10	g : 0.10	= : 0.08	i : 0.04	] : 0.04	3 : 0.02	b : 0.02	
e : 0.26	f : 0.12	d : 0.12	g : 0.12	c : 0.10	= : 0.08	b : 0.06	] : 0.04	i : 0.04	3 : 0.02	2 : 0.02	
f : 0.14	d : 0.14	g : 0.12	e : 0.10	c : 0.10	= : 0.08	3 : 0.06	] : 0.06	2 : 0.06	i : 0.04	b : 0.04	: : 0.02	4 : 0.02	
d : 0.26	g : 0.18	] : 0.12	= : 0.08	2 : 0.06	3 : 0.04	c : 0.04	: : 0.04	i : 0.04	4 : 0.04	a : 0.02	f : 0.02	> : 0.02	e : 0.02	
d : 0.26	g : 0.12	= : 0.10	b : 0.08	c : 0.08	] : 0.06	3 : 0.06	4 : 0.06	i : 0.04	2 : 0.02	f : 0.02	> : 0.02	h : 0.02	: : 0.02	e : 0.02	
d : 0.24	= : 0.12	g : 0.12	c : 0.12	b : 0.08	i : 0.06	4 : 0.06	e : 0.04	f : 0.02	3 : 0.02	5 : 0.02	> : 0.02	] : 0.02	h : 0.02	a : 0.02	
d : 0.24	= : 0.12	g : 0.10	c : 0.10	] : 0.08	3 : 0.04	i : 0.04	e : 0.04	f : 0.04	4 : 0.04	2 : 0.02	5 : 0.02	> : 0.02	a : 0.02	F : 0.02	h : 0.02	6 : 0.02	

#score	731.4652768286228
#seq	49
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_transcript_m2_run2.txt

#BEAR
:ffffff^^^^^^^^^^^^^^^^	chr2:203071598-203071900(-)$1	302	134	157	17.7674
ee[eeeeevvvvvvvvvvvvvee	chr11:64534271-64534564(-)$1	293	15	38	20.9107
ee[ffffffuuuuuuuuuuuuff	chr1:150237745-150238024(-)$1	279	189	212	19.4909
hhhhddddwwwwwwwwwwwwwwd	chrX:152481608-152481908(-)$1	300	158	181	19.9041
&&&&&cccvvvvvvvvvvvvvcc	chr19:42752054-42752357(-)$1	303	148	171	18.9292
DDffffffuuuuuuuuuuuufff	chr19:54710328-54710540(+)$1	212	77	100	16.9078
^^^^^^^^^^^^^^^^^^^^^^^	chr19:56671685-56672055(+)$1	370	87	110	18.2425
d!!eeeeexxxxxxxxxxxxxxx	chr6:34555400-34555629(-)$1	229	160	183	19.4455
e"""ddddvvvvvvvvvvvvvdd	chr2:27249855-27250106(+)$1	251	42	65	21.0650
b"""eeeeevvvvvvvvvvvvve	chr16:31202323-31202531(+)$1	208	109	132	21.2753
bb[cccwwwwwwwwwwwwwwccc	chr11:61641159-61641418(-)$1	259	191	214	19.5354
"""eeeee^^^^^^^^^^^^^^^	chr1:46654600-46654845(-)$1	245	196	219	19.1764
d!!ccc[bbwwwwwwwwwwwwww	chr17:38613521-38613761(+)$1	240	103	126	21.0445
####eeeeevvvvvvvvvvvvve	chr7:130146168-130146421(-)$1	253	132	155	21.3597
GGGeeeeeuuuuuuuuuuuueee	chr9:140005231-140005489(-)$1	258	137	160	18.0933
eeee^^^^^^^^^^^^^^^^^^^	chr4:77969501-77969776(-)$1	275	181	204	18.0160
BB:eeeeewwwwwwwwwwwwwwe	chr16:29822066-29822305(+)$1	239	140	163	19.0581
ggggggg^^^^^^^^^^^^^^^^	chr19:59067183-59067393(-)$1	210	84	107	18.7121
b!!eeeeeyyyyyyyyyyyyyyy	chr1:1228426-1228673(-)$1	247	122	145	20.5116
c!!ccc[bbwwwwwwwwwwwwww	chr7:100804071-100804325(+)$1	254	134	157	21.1688
effffff^^^^^^^^^^^^^^^^	chr17:37885494-37885714(-)$1	220	6	29	18.3285
$$$$ddddwwwwwwwwwwwwwwd	chr19:56671564-56671825(+)$1	261	210	233	21.1513
ee[fffffftttttttttttfff	chr17:48211184-48211489(-)$1	305	26	49	16.6645
:dddd^^^^^^^^^^^^^^^^^^	chr1:151139715-151139991(+)$1	276	97	120	17.4654
ff!!bb^^^^^^^^^^^^^^^^^	chr15:74701960-74702210(-)$1	250	128	151	18.6790
::dddd[avvvvvvvvvvvvva]	chr12:49952138-49952574(-)$1	436	19	42	19.5765
ggggggg^^^^^^^^^^^^^^^^	chr9:139566917-139567168(+)$1	251	43	66	18.7121
cc[ffffffwwwwwwwwwwwwww	chr3:9743714-9743999(+)$1	285	131	154	20.6378
$$$$cccxxxxxxxxxxxxxxxc	chr6:158094594-158094885(+)$1	291	75	98	19.1421
ee[ccc[cccuuuuuuuuuuuuc	chr22:20099924-20100216(-)$1	292	198	221	20.0755
$$$$ddddvvvvvvvvvvvvvdd	chr12:56510320-56510543(+)$1	223	52	75	20.5707
FFCCCcccwwwwwwwwwwwwwwc	chr1:22148970-22149224(-)$1	254	24	47	17.5794
ee"""eeeeeuuuuuuuuuuuue	chr8:142441182-142441415(+)$1	233	93	116	19.4807
cc[dddd^^^^^^^^^^^^^^^^	chr2:102508243-102508513(+)$1	270	199	222	19.1247
%%%%%cccuuuuuuuuuuuuccc	chr8:145161638-145161865(+)$1	227	93	116	17.7581
bbffffffvvvvvvvvvvvvvff	chr21:33975366-33975628(-)$1	262	81	104	19.8770
!ccc"""cccuuuuuuuuuuuuc	chr11:252682-252937(+)$1	255	150	173	19.4308
dd!!bb^^^^^^^^^^^^^^^^^	chr19:18545120-18545388(+)$1	268	81	104	18.6317
ggggeeeeevvvvvvvvvvvvve	chr5:139062838-139063106(+)$1	268	24	47	20.6815
f!!dddd^^^^^^^^^^^^^^^^	chr5:176798930-176799199(+)$1	269	69	92	19.2249
:ffffffyyyyyyyyyyyyyyyy	chr9:134108795-134109084(+)$1	289	226	249	18.9250
ggggddddwwwwwwwwwwwwwwd	chr6:8079813-8080071(-)$1	258	159	182	21.0259
====[cccuuuuuuuuuuuuccc	chr4:1718491-1718781(-)$1	290	142	165	19.8714
:::eeeeevvvvvvvvvvvvvee	chr19:18545801-18546017(-)$1	216	120	143	18.4817
eee]cccccctttttttttttcc	chrX:102470002-102470231(+)$1	229	129	152	17.0124
ee"""cccuuuuuuuuuuuuccc	chr19:54972226-54972442(+)$1	216	180	203	20.0544
d[ddddccctttttttttttccc	chr15:74701692-74701988(-)$1	296	85	108	17.2887
hhhhhhhhwwwwwwwwwwwwwwh	chr22:50942695-50943007(-)$1	312	220	243	18.6836
ffffff!!bbtttttttttttbb	chr16:67978265-67978509(-)$1	244	33	56	16.2969
fffffeeeeeuuuuuuuuuuuue	chrX:153670956-153671219(+)$1	263	229	252	18.8093
cc[ffffffvvvvvvvvvvvvvf	chr11:69063936-69064225(+)$1	289	185	208	20.6741
cc!!cccwwwwwwwwwwwwwwcc	chr6:33257568-33257797(+)$1	229	74	97	21.3983
:a[ccceeeeeuuuuuuuuuuuu	chr20:39803895-39804158(+)$1	263	125	148	17.6545
%%%%bb[cccuuuuuuuuuuuuc	chr1:154929931-154930159(-)$1	228	67	90	17.9508
ff[bbbbxxxxxxxxxxxxxxxb	chr1:173457404-173457646(+)$1	242	47	70	17.8983
gga[bb[bbuuuuuuuuuuuubb	chr9:131770813-131771099(-)$1	286	151	174	19.0840
ff[ccc^^^^^^^^^^^^^^^^^	chr22:31303520-31303788(+)$1	268	201	224	19.0455
CC:ddddwwwwwwwwwwwwwwdd	chr19:46273083-46273342(-)$1	259	127	150	17.5961
h!!dddd^^^^^^^^^^^^^^^^	chr19:47278112-47278342(-)$1	230	77	100	19.0342
d!!eeeee^^^^^^^^^^^^^^^	chr11:64533291-64533537(-)$1	246	142	165	19.0424
"""dddd^^^^^^^^^^^^^^^^	chr17:34052734-34052994(+)$1	260	217	240	19.3745
[a[dddd^^^^^^^^^^^^^^^^	chr19:15491039-15491308(-)$1	269	63	86	19.1688
cc[ccc[awwwwwwwwwwwwwwa	chr19:55918959-55919230(-)$1	271	37	60	22.1892

#otherMatches

#Seq PSSM
CCCUCUCCUUUUUAAAAAUUACG	chr2:203071598-203071900(-)$1	302	134	157	17.7674
AUGAUGCCGCCACCACCUAUGGG	chr11:64534271-64534564(-)$1	293	15	38	20.9107
UGUGAUUUUGACUAAUAAAAAAG	chr1:150237745-150238024(-)$1	279	189	212	19.4909
UAUUUUGUGAAUUGGGAUAAUAA	chrX:152481608-152481908(-)$1	300	158	181	19.9041
CACCCGCUCUGCCCCACUCCCAG	chr19:42752054-42752357(-)$1	303	148	171	18.9292
CUAUCUCCUAUGCAGCCCUCGGA	chr19:54710328-54710540(+)$1	212	77	100	16.9078
cucaccucagccccccccuucuc	chr19:56671685-56672055(+)$1	370	87	110	18.2425
GCUGUAACCUUAAGCCCAUCAAA	chr6:34555400-34555629(-)$1	229	160	183	19.4455
CCCUGAGGCCCCCAGCCACUCCC	chr2:27249855-27250106(+)$1	251	42	65	21.0650
UAAGACUUUAAAUCAGAAUAAAA	chr16:31202323-31202531(+)$1	208	109	132	21.2753
GGCGGGAUCGAUACCCUCACCCC	chr11:61641159-61641418(-)$1	259	191	214	19.5354
UGGCUCAGAAUCUAACCUAUUUA	chr1:46654600-46654845(-)$1	245	196	219	19.1764
UGAGCAGUCAGGGUGGGAAGAAA	chr17:38613521-38613761(+)$1	240	103	126	21.0445
CAGCUUUGGGUGAUCUUGAAAAU	chr7:130146168-130146421(-)$1	253	132	155	21.3597
AGCGCACCACCUCGACCUCAGGU	chr9:140005231-140005489(-)$1	258	137	160	18.0933
CAGCCUUUUACCAUCAUCUCCCA	chr4:77969501-77969776(-)$1	275	181	204	18.0160
CCAGAGGCAGAGAAGAGAUGGAG	chr16:29822066-29822305(+)$1	239	140	163	19.0581
UAGUUAUUUUUUUUUUUUUAACA	chr19:59067183-59067393(-)$1	210	84	107	18.7121
GCUGGCUCCCUCCUGCACACCCC	chr1:1228426-1228673(-)$1	247	122	145	20.5116
UCAGGGCACUUCUUGUCCUCUCU	chr7:100804071-100804325(+)$1	254	134	157	21.1688
GGGAGCUCCCCCUGCCUCUUUCC	chr17:37885494-37885714(-)$1	220	6	29	18.3285
caccucagccccccccuucuccc	chr19:56671564-56671825(+)$1	261	210	233	21.1513
GUUUUUGUUCAUUUUUUAAAAAC	chr17:48211184-48211489(-)$1	305	26	49	16.6645
AACUCAGACACGACUUAUCACCC	chr1:151139715-151139991(+)$1	276	97	120	17.4654
GUGAGGGAAACGGGAGAAUGAAG	chr15:74701960-74702210(-)$1	250	128	151	18.6790
CUGGUGCCACCUCUGUCUUAAGC	chr12:49952138-49952574(-)$1	436	19	42	19.5765
CCUGGCUACCCCAACGGCAUCCC	chr9:139566917-139567168(+)$1	251	43	66	18.7121
ACUGGUGACCACCACCCCUUCUU	chr3:9743714-9743999(+)$1	285	131	154	20.6378
CUUUUUCUUUUUUUAAUUUUGUG	chr6:158094594-158094885(+)$1	291	75	98	19.1421
CUUGCUGGCCAGGAUAUUCAGAG	chr22:20099924-20100216(-)$1	292	198	221	20.0755
CACCCGGCGCUCCAUUAAAUAGC	chr12:56510320-56510543(+)$1	223	52	75	20.5707
GGCCUGCAUUCCCACCCCCUCCU	chr1:22148970-22149224(-)$1	254	24	47	17.5794
UCCCCGACACCUCCGUGCACUUG	chr8:142441182-142441415(+)$1	233	93	116	19.4807
UGGUUCUaaaaaaaaaaaaaaaa	chr2:102508243-102508513(+)$1	270	199	222	19.1247
CCUCAGUGGCUCCACCUACACAC	chr8:145161638-145161865(+)$1	227	93	116	17.7581
AGCUGAGAAGAACGAAGAAGCUU	chr21:33975366-33975628(-)$1	262	81	104	19.8770
AGGUGAUACGGGAGAGAAAGAAC	chr11:252682-252937(+)$1	255	150	173	19.4308
CUUACCAUUUUAUUAAAAACGCA	chr19:18545120-18545388(+)$1	268	81	104	18.6317
UUCUGUAACCUUUUGAAAUCUAG	chr5:139062838-139063106(+)$1	268	24	47	20.6815
AGACCCCACCACAGACCAAAUCA	chr5:176798930-176799199(+)$1	269	69	92	19.2249
CGCAUGAUUACUUGUUUUAUAUU	chr9:134108795-134109084(+)$1	289	226	249	18.9250
CAAGUUGAGAUCCAGUUAUAAAU	chr6:8079813-8080071(-)$1	258	159	182	21.0259
AGAUCCUGCACACACAGACACAG	chr4:1718491-1718781(-)$1	290	142	165	19.8714
CAUGCUCCUGGAACACAAAAUGG	chr19:18545801-18546017(-)$1	216	120	143	18.4817
GGCGGCCCCGAAAUUAGGAAGCG	chrX:102470002-102470231(+)$1	229	129	152	17.0124
GUUUUCUCUCUCUCUCUUUCGAG	chr19:54972226-54972442(+)$1	216	180	203	20.0544
GCUCCUAGCCUCCCACCUUCGCU	chr15:74701692-74701988(-)$1	296	85	108	17.2887
CCCAGCCUGGGGAGCAGGGGUAA	chr22:50942695-50943007(-)$1	312	220	243	18.6836
GGGCCGAGUGGGGUUUGAAGGCA	chr16:67978265-67978509(-)$1	244	33	56	16.2969
UCUUUCUUGGCCCUUCCUUAUCC	chrX:153670956-153671219(+)$1	263	229	252	18.8093
ggugcugggaaAAUCAUGAUAAC	chr11:69063936-69064225(+)$1	289	185	208	20.6741
CUGAUCCAGAAGAAGCUACAGGG	chr6:33257568-33257797(+)$1	229	74	97	21.3983
AUGCUUUCCCUGAGGAAUGAAAA	chr20:39803895-39804158(+)$1	263	125	148	17.6545
UAUUUGUCUUUUUUUAUUUUUUA	chr1:154929931-154930159(-)$1	228	67	90	17.9508
GCCCAGGAACUUCUAGAAUAACC	chr1:173457404-173457646(+)$1	242	47	70	17.8983
CCCCCCCGCAUUCUGGCCUAGGC	chr9:131770813-131771099(-)$1	286	151	174	19.0840
GCUGUGGAAUGUACCUCUCCCCA	chr22:31303520-31303788(+)$1	268	201	224	19.0455
CCCGCGCCCCCCUCCUCACUUGC	chr19:46273083-46273342(-)$1	259	127	150	17.5961
AUCCCCUAUUCCCUCCACAAUAA	chr19:47278112-47278342(-)$1	230	77	100	19.0342
UCCCAUGGACCCUUCUAACUUUG	chr11:64533291-64533537(-)$1	246	142	165	19.0424
CUUGGGGAAGCCACCUCCCAUCA	chr17:34052734-34052994(+)$1	260	217	240	19.3745
ACAGGGCGAGAACCCUUUCACCG	chr19:15491039-15491308(-)$1	269	63	86	19.1688
CGGGCGGUUAUAAAGAGGCAGUG	chr19:55918959-55919230(-)$1	271	37	60	22.1892

#DB
.((((((................	chr2:203071598-203071900(-)$1	1	134	157	17.7674
((.(((((.............))	chr11:64534271-64534564(-)$1	1	15	38	20.9107
((.((((((............))	chr1:150237745-150238024(-)$1	1	189	212	19.4909
((((((((..............)	chrX:152481608-152481908(-)$1	1	158	181	19.9041
.....(((.............))	chr19:42752054-42752357(-)$1	1	148	171	18.9292
((((((((............)))	chr19:54710328-54710540(+)$1	1	77	100	16.9078
.......................	chr19:56671685-56672055(+)$1	1	87	110	18.2425
(..(((((...............	chr6:34555400-34555629(-)$1	1	160	183	19.4455
(...((((.............))	chr2:27249855-27250106(+)$1	1	42	65	21.0650
(...(((((.............)	chr16:31202323-31202531(+)$1	1	109	132	21.2753
((.(((..............)))	chr11:61641159-61641418(-)$1	1	191	214	19.5354
...(((((...............	chr1:46654600-46654845(-)$1	1	196	219	19.1764
(..(((.((..............	chr17:38613521-38613761(+)$1	1	103	126	21.0445
....(((((.............)	chr7:130146168-130146421(-)$1	1	132	155	21.3597
)))(((((............)))	chr9:140005231-140005489(-)$1	1	137	160	18.0933
((((...................	chr4:77969501-77969776(-)$1	1	181	204	18.0160
((.(((((..............)	chr16:29822066-29822305(+)$1	1	140	163	19.0581
(((((((................	chr19:59067183-59067393(-)$1	1	84	107	18.7121
(..(((((...............	chr1:1228426-1228673(-)$1	1	122	145	20.5116
(..(((.((..............	chr7:100804071-100804325(+)$1	1	134	157	21.1688
(((((((................	chr17:37885494-37885714(-)$1	1	6	29	18.3285
....((((..............)	chr19:56671564-56671825(+)$1	1	210	233	21.1513
((.((((((...........)))	chr17:48211184-48211489(-)$1	1	26	49	16.6645
.((((..................	chr1:151139715-151139991(+)$1	1	97	120	17.4654
((..((.................	chr15:74701960-74702210(-)$1	1	128	151	18.6790
..((((.(.............).	chr12:49952138-49952574(-)$1	1	19	42	19.5765
(((((((................	chr9:139566917-139567168(+)$1	1	43	66	18.7121
((.((((((..............	chr3:9743714-9743999(+)$1	1	131	154	20.6378
....(((...............)	chr6:158094594-158094885(+)$1	1	75	98	19.1421
((.(((.(((............)	chr22:20099924-20100216(-)$1	1	198	221	20.0755
....((((.............))	chr12:56510320-56510543(+)$1	1	52	75	20.5707
((((((((..............)	chr1:22148970-22149224(-)$1	1	24	47	17.5794
((...(((((............)	chr8:142441182-142441415(+)$1	1	93	116	19.4807
((.((((................	chr2:102508243-102508513(+)$1	1	199	222	19.1247
.....(((............)))	chr8:145161638-145161865(+)$1	1	93	116	17.7581
((((((((.............))	chr21:33975366-33975628(-)$1	1	81	104	19.8770
.(((...(((............)	chr11:252682-252937(+)$1	1	150	173	19.4308
((..((.................	chr19:18545120-18545388(+)$1	1	81	104	18.6317
))))(((((.............)	chr5:139062838-139063106(+)$1	1	24	47	20.6815
(..((((................	chr5:176798930-176799199(+)$1	1	69	92	19.2249
.((((((................	chr9:134108795-134109084(+)$1	1	226	249	18.9250
((((((((..............)	chr6:8079813-8080071(-)$1	1	159	182	21.0259
((((.(((............)))	chr4:1718491-1718781(-)$1	1	142	165	19.8714
...(((((.............))	chr19:18545801-18546017(-)$1	1	120	143	18.4817
))).)))(((...........))	chrX:102470002-102470231(+)$1	1	129	152	17.0124
((...(((............)))	chr19:54972226-54972442(+)$1	1	180	203	20.0544
(.(((((((...........)))	chr15:74701692-74701988(-)$1	1	85	108	17.2887
((((((((..............)	chr22:50942695-50943007(-)$1	1	220	243	18.6836
((((((..((...........))	chr16:67978265-67978509(-)$1	1	33	56	16.2969
((((((((((............)	chrX:153670956-153671219(+)$1	1	229	252	18.8093
((.((((((.............)	chr11:69063936-69064225(+)$1	1	185	208	20.6741
((..(((..............))	chr6:33257568-33257797(+)$1	1	74	97	21.3983
.(.((((((((............	chr20:39803895-39804158(+)$1	1	125	148	17.6545
....((.(((............)	chr1:154929931-154930159(-)$1	1	67	90	17.9508
((.((((...............)	chr1:173457404-173457646(+)$1	1	47	70	17.8983
(((.((.((............))	chr9:131770813-131771099(-)$1	1	151	174	19.0840
((.(((.................	chr22:31303520-31303788(+)$1	1	201	224	19.0455
((.((((..............))	chr19:46273083-46273342(-)$1	1	127	150	17.5961
(..((((................	chr19:47278112-47278342(-)$1	1	77	100	19.0342
(..(((((...............	chr11:64533291-64533537(-)$1	1	142	165	19.0424
...((((................	chr17:34052734-34052994(+)$1	1	217	240	19.3745
.(.((((................	chr19:15491039-15491308(-)$1	1	63	86	19.1688
((.(((.(..............)	chr19:55918959-55919230(-)$1	1	37	60	22.1892

#PSSM
e : 0.15	: : 0.09	c : 0.09	f : 0.09	d : 0.07	g : 0.07	b : 0.06	h : 0.04	$ : 0.04	" : 0.03	% : 0.03	& : 0.01	D : 0.01	^ : 0.01	# : 0.01	G : 0.01	B : 0.01	F : 0.01	! : 0.01	= : 0.01	C : 0.01	[ : 0.01	
f : 0.12	e : 0.12	! : 0.11	c : 0.09	g : 0.07	" : 0.06	$ : 0.04	h : 0.03	b : 0.03	d : 0.03	: : 0.03	% : 0.03	a : 0.03	& : 0.01	D : 0.01	^ : 0.01	# : 0.01	G : 0.01	B : 0.01	F : 0.01	= : 0.01	[ : 0.01	C : 0.01	
[ : 0.20	! : 0.15	f : 0.11	" : 0.09	g : 0.06	: : 0.04	$ : 0.04	d : 0.04	h : 0.03	e : 0.03	% : 0.03	& : 0.01	^ : 0.01	# : 0.01	G : 0.01	C : 0.01	c : 0.01	= : 0.01	a : 0.01	
f : 0.17	e : 0.14	d : 0.14	c : 0.12	" : 0.06	g : 0.06	$ : 0.04	! : 0.04	h : 0.03	% : 0.03	& : 0.01	^ : 0.01	# : 0.01	C : 0.01	= : 0.01	] : 0.01	b : 0.01	[ : 0.01	
d : 0.22	f : 0.17	e : 0.17	c : 0.15	b : 0.07	" : 0.04	^ : 0.03	g : 0.03	& : 0.01	C : 0.01	% : 0.01	[ : 0.01	h : 0.01	
c : 0.23	e : 0.20	d : 0.20	f : 0.15	b : 0.07	^ : 0.04	g : 0.03	" : 0.01	h : 0.01	
e : 0.22	d : 0.17	f : 0.14	c : 0.14	[ : 0.11	^ : 0.09	g : 0.03	w : 0.01	" : 0.01	h : 0.01	! : 0.01	b : 0.01	
^ : 0.23	e : 0.22	c : 0.15	f : 0.09	d : 0.07	w : 0.04	b : 0.04	a : 0.03	x : 0.03	y : 0.01	h : 0.01	! : 0.01	
^ : 0.26	w : 0.15	v : 0.11	e : 0.09	u : 0.07	c : 0.07	f : 0.06	b : 0.06	x : 0.04	y : 0.03	
^ : 0.26	w : 0.20	v : 0.17	u : 0.11	c : 0.06	x : 0.04	e : 0.04	y : 0.03	t : 0.03	b : 0.01	
^ : 0.26	w : 0.20	u : 0.19	v : 0.17	t : 0.06	x : 0.04	y : 0.03	e : 0.01	
^ : 0.26	u : 0.20	w : 0.20	v : 0.17	t : 0.06	x : 0.04	y : 0.03	
^ : 0.26	u : 0.20	w : 0.20	v : 0.17	t : 0.06	x : 0.04	y : 0.03	
^ : 0.26	u : 0.20	w : 0.20	v : 0.17	t : 0.06	x : 0.04	y : 0.03	
^ : 0.26	u : 0.20	w : 0.20	v : 0.17	t : 0.06	x : 0.04	y : 0.03	
^ : 0.26	u : 0.20	w : 0.20	v : 0.17	t : 0.06	x : 0.04	y : 0.03	
^ : 0.26	u : 0.20	w : 0.20	v : 0.17	t : 0.06	x : 0.04	y : 0.03	
^ : 0.26	u : 0.20	w : 0.20	v : 0.17	t : 0.06	x : 0.04	y : 0.03	
^ : 0.26	u : 0.20	w : 0.20	v : 0.17	t : 0.06	x : 0.04	y : 0.03	
^ : 0.26	u : 0.20	w : 0.20	v : 0.17	t : 0.06	x : 0.04	y : 0.03	
^ : 0.26	w : 0.19	v : 0.17	u : 0.12	c : 0.07	x : 0.04	f : 0.03	y : 0.03	t : 0.03	e : 0.01	
^ : 0.26	w : 0.15	c : 0.12	u : 0.09	f : 0.06	v : 0.06	e : 0.04	x : 0.04	d : 0.04	y : 0.03	b : 0.03	a : 0.01	
^ : 0.26	c : 0.20	e : 0.14	d : 0.09	f : 0.07	w : 0.04	b : 0.04	y : 0.03	x : 0.01	] : 0.01	h : 0.01	u : 0.01	a : 0.01	

#score	1209.969438231398
#seq	63
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_CDS_m2_run1.txt

#BEAR
!!dddd####gggggggooooooggggggg4444dddd]	chr1:224492673-224492975(-)$1	302	107	146	13.7972
========bb!!eeeeerrrrrrrrreeeee333bb333	chr16:70572981-70573242(+)$1	261	4	43	13.7691
========!!a!!cccqqqqqqqqccc22a22=======	chr17:37590458-37590706(-)$1	248	33	72	14.9186
[eeeee"""ggggggg[ccclllccc]ggggggg4444e	chr12:80172227-80172507(-)$1	280	216	255	12.7312
[==========[============[eeeee[ggggggg!	chr15:101826960-101827230(-)$1	270	160	199	13.1053
eeee!!eeeee"""cccmmmmccc333eeeee4444eee	chr12:54687017-54687306(-)$1	289	60	99	11.7164
eee:iiiiiiiii!!ccclllccc333iiiiiiiiihhh	chrX:122757516-122757764(-)$1	248	179	218	14.3944
b[ffffff!!ccc!!cccmmmmccc333ccc333fffff	chr7:112098916-112099197(+)$1	281	18	57	13.0781
========="""bb[bbmmmmbb]bb22==========H	chr2:61521991-61522283(-)$1	292	128	167	14.4376
==========ddddcccooooooccc]dddd]=======	chr9:131720163-131720463(+)$1	300	108	147	18.1675
:iiiiiiiiidddd!!bbmmmmbb22dddd333iiiiii	chr5:138653300-138653557(+)$1	257	108	147	12.1629
============cccqqqqqqqqccc]============	chr7:104714969-104715236(+)$1	267	74	113	15.9110
eeee"""ccc!!ddddoooooodddd22ccc22eeeee2	chr19:10505887-10506200(-)$1	313	240	279	13.2841
""eeeee[dddd!!cccooooooccc22ddddeeeee33	chr3:9475403-9475658(+)$1	255	150	189	13.6958
b####iiiiiiiii!!aooooooa22iiiiiiiiibb]e	chr19:42740958-42741263(-)$1	305	222	261	16.0696
b[eeeee"""dddd[ccclllccc]dddd333eeeee]b	chr14:53175052-53175353(+)$1	301	23	62	11.6769
!iiiiiiiii[bb[a[ccclllccca]bb333iiiiiii	chr2:15768420-15768692(+)$1	272	23	62	15.7279
hh[a!!eeeee"""cccnnnnnccc333eeeee22a]hh	chr21:40649135-40649380(-)$1	245	9	48	12.2353
hh$$$$$==========oooooo==========333hhh	chr12:80226118-80226374(-)$1	256	65	104	15.7077
::bb[============oooooo============]bb:	chr3:47727483-47727733(-)$1	250	48	87	14.1781
===="""bb####ddddrrrrrrrrrdddd333bb====	chrX:48434780-48435035(+)$1	255	193	232	14.0170
ff####ccc!!dddd[bboooooobb]dddd]ccc>>>>	chr16:18809121-18809359(-)$1	238	31	70	11.7346
gggggg####ccc!!bboooooobb22ccc22ggggggg	chr17:37595275-37595564(-)$1	289	1	40	15.6032
===========####ccclllccc333============	chr5:158585925-158586152(-)$1	227	139	178	18.7799
[ggggggg####eeeeeooooooeeeee]ggggggg]bb	chr15:45479964-45480181(+)$1	217	110	149	14.7329
iiiiiiiii"""eeeeemmmmeeeee333iiiiiiiii]	chr5:118437479-118437781(+)$1	302	241	280	15.1985
!==============rrrrrrrrr==============2	chr1:212240102-212240361(+)$1	259	169	208	17.5139
bbggggggg$$$$$cccooooooccc4444ggggggg]b	chr22:29194879-29195175(-)$1	296	122	161	15.6784
f:================mmmm================:	chr9:134107590-134107822(+)$1	232	156	195	14.9003
fffff===========mmmm===========22ffffff	chr1:113464613-113464877(-)$1	264	66	105	12.4090
iiiiii[ccc[eeeeennnnneeeee22ccc]iiiiiii	chr6:36569634-36569912(+)$1	278	88	127	13.3454
==================mmmm=================	chr9:132845705-132845985(+)$1	280	240	279	17.4484
dddd[ggggggg####cccmmmmccc22ggggggg]ddd	chr4:48533032-48533291(-)$1	259	132	171	12.2875
[dddd[ccc[bb!!cccooooooccc]bb]ccc]dddd]	chr12:56552122-56552445(+)$1	323	44	83	13.6845
iiii!!bb[a"""ccc[ccclllccc]ccc333a]bb33	chr10:96117798-96118088(-)$1	290	89	128	14.7727
===========xxxxxxxxxxxxxxx============2	chr12:112479752-112480024(-)$1	272	77	116	15.2889
e[a[a[ggggggga[bboooooobb]a22ggggggg]a]	chr1:44442339-44442578(+)$1	239	165	204	15.0083
===="""cccddddrrrrrrrrrdddd]ccc22======	chr1:172548233-172548478(+)$1	245	148	187	14.0397
==========="""cccmmmmccc333===========:	chr2:234754257-234754577(-)$1	320	277	316	17.3158
"ddddccc!!gggggggooooooggggggg22ccc22dd	chr12:93792415-93792678(+)$1	263	46	85	13.1614
ii"""ggggggg[bbbboooooobb333bb]ggggggg5	chr7:882723-882985(+)$1	262	42	81	14.7252
iiiii[dddddddd[cccnnnnnccc333dddd]dddd2	chr1:144912155-144912407(-)$1	252	131	170	11.7823
==========[eeeeennnnneeeee]==========::	chr12:123665593-123665869(-)$1	276	33	72	13.2432
=======[ccc[cccqqqqqqqqccc22ccc========	chr7:107531622-107531875(+)$1	253	207	246	14.6381
!==========xxxxxxxxxxxxxxx==========22b	chr7:12391220-12391488(-)$1	268	154	193	14.5561
iiiiiiiii!!ffffffrrrrrrrrrffffffiiiiiii	chr18:166636-166936(+)$1	300	83	122	13.5686
c[ccc[bbaccc[ddddoooooodddd]ccc]a]bb22c	chr18:33749904-33750169(+)$1	265	69	108	12.8567
f"""a[ffffff!!cccooooooccc4444ffffff22a	chr9:114153923-114154205(-)$1	282	104	143	14.3197
eee[ffffff!!ccc[aooooooa]ccc22ffffff]ee	chr1:145440670-145440910(+)$1	240	118	157	12.5295
ggggggg$$$$$dddd[ccclllcccdddd333gggggg	chr4:80993378-80993680(-)$1	302	198	237	12.7462
!!iiiiiiiiiffffffooooooffffff333iiiiiii	chr1:109238549-109238799(+)$1	250	117	156	16.1664
]ddddggggggg!!cccccclllccc]ccc22ggggggg	chr1:47767868-47768167(-)$1	299	137	176	13.4004

#otherMatches

#Seq PSSM
GAUUCAAAAGAUUCUUCUCUUUUGGAGAGUGAUAUGAAA	chr1:224492673-224492975(-)$1	302	107	146	13.7972
GAAUGUUUCUUUUCUCACCAGGUUACUGAGAUCCGGCUC	chr16:70572981-70573242(+)$1	261	4	43	13.7691
GUUUUAUAUAGCUGUGAUUUUUGGCACUUUGUUGUAAGA	chr17:37590458-37590706(-)$1	248	33	72	14.9186
UAUGUAUUAAUGUUUAAAAUACUAUUAUAGAUAUGGUUU	chr12:80172227-80172507(-)$1	280	216	255	12.7312
UGUUUUUCUUUAUAUUUUUGUUACUGAUUAUUAAAAUUG	chr15:101826960-101827230(-)$1	270	160	199	13.1053
AAGAAUCCAGCUUGUUCCUGAGAGAGUGUUGGUUUCUCU	chr12:54687017-54687306(-)$1	289	60	99	11.7164
CUGAAGACUUUAAAAUGUUUUACAGUGUUGAAGUUUAUC	chrX:122757516-122757764(-)$1	248	179	218	14.3944
UGCAGCUGCAGCGUUAGCAUCUGUUCUUUGUAUUCAGCU	chr7:112098916-112099197(+)$1	281	18	57	13.0781
GAUCUUUAUCCAGAUUCAGAUGAUUCAAGUGAAGAUCAA	chr2:61521991-61522283(-)$1	292	128	167	14.4376
UCUGUUUUUCUUUUCAGACAGUACUGCAAGAUGAGAGGC	chr9:131720163-131720463(+)$1	300	108	147	18.1675
AGGUAUGAAUUGAAAUAUUGGUAUUAUUCAUUUAUUCAU	chr5:138653300-138653557(+)$1	257	108	147	12.1629
UAAAAUAGAAGUAUUAAAUGUGCAAUAAUUUUUAUUUUG	chr7:104714969-104715236(+)$1	267	74	113	15.9110
UGCGAGGAGACAGCCAAUUACCUGGUCAUUUGGUGCAUU	chr19:10505887-10506200(-)$1	313	240	279	13.2841
GCAGUUAAUGAGAAGAGCGUGUAUUCCACUCAUAAUUAU	chr3:9475403-9475658(+)$1	255	150	189	13.6958
UGAGAUACUUUUUCUACUCCAGUGGCGAGAAGGUGAGAU	chr19:42740958-42741263(-)$1	305	222	261	16.0696
UGAUCUGAAGGCCCUACAGAGUGUUGGGCAGGUAGGUGA	chr14:53175052-53175353(+)$1	301	23	62	11.6769
CGACCUCUAAUCUGAUAGUAACACUUGAGUUUUUAGAGG	chr2:15768420-15768692(+)$1	272	23	62	15.7279
AUGAUCUUUCUUUUUUAUAUUUUAAUAUGGAAAUUUGAU	chr21:40649135-40649380(-)$1	245	9	48	12.2353
UUAAGCAAAAAUAAAAAGAACUAUUUUUAUUUUAUCAGG	chr12:80226118-80226374(-)$1	256	65	104	15.7077
UUGAACUUUGUCUUCUUUUCUAUAGGAAGAUGAAGAUCC	chr3:47727483-47727733(-)$1	250	48	87	14.1781
CCAGAGACUAUAAUGGCAGGUGGGUAGCCAAAGGGCUGG	chrX:48434780-48435035(+)$1	255	193	232	14.0170
UUUCCUGUUUUGUUAUGUUUUUGUGCUUGGCUGACUACC	chr16:18809121-18809359(-)$1	238	31	70	11.7346
UGUAGUUUUAAUGGUUUUGUUGUAAAACAUGUGCUAUAG	chr17:37595275-37595564(-)$1	289	1	40	15.6032
AGUCAUUUUUUCCAUGCAGGCUGUCUUAAGAAAUGGCUG	chr5:158585925-158586152(-)$1	227	139	178	18.7799
cgggccgcccccAGCGCUCCCCUGCGUUCGCGGCCCCGG	chr15:45479964-45480181(+)$1	217	110	149	14.7329
UUCUUUUAGGAAUUGAAAUGUUUUAAGUAUUGAAAGAGU	chr5:118437479-118437781(+)$1	302	241	280	15.1985
AGAUUGUGAUGAGGCAGUCACAUAGUCUCAUUAUAAUUG	chr1:212240102-212240361(+)$1	259	169	208	17.5139
GAAGAAGAGGUAAAACUACUUAAGGUCAAACUCUUUUAU	chr22:29194879-29195175(-)$1	296	122	161	15.6784
UUGGAAGUGUGUGGAUCUUGCUGGAUUUGUGCAUUUUCU	chr9:134107590-134107822(+)$1	232	156	195	14.9003
UGUAGAUGUGAGGGAGCAGUUUCCUUUAUAUUACUACAU	chr1:113464613-113464877(-)$1	264	66	105	12.4090
uuuuuuuuuuuuuuAGUCGAUCUAGGUCAAAUGAAAGGA	chr6:36569634-36569912(+)$1	278	88	127	13.3454
ugcauguguguguguguAUUGAUauauauacauacaugc	chr9:132845705-132845985(+)$1	280	240	279	17.4484
AAAUUGAUGAAGUUACUCUACUAGGAAUUUUCAUUUGUU	chr4:48533032-48533291(-)$1	259	132	171	12.2875
GGAGAGCUGAGCAGUCAAGAUGGUGGGGCCCAGGUCUUG	chr12:56552122-56552445(+)$1	323	44	83	13.6845
CUUUGUGUGUGUGUGUGUGUGGUACAGGUAAAAGGAUUG	chr10:96117798-96118088(-)$1	290	89	128	14.7727
AGAAUUGAAAGUUUUUCAUUUUUUGUUUUUCAAUUUUAG	chr12:112479752-112480024(-)$1	272	77	116	15.2889
AUGGGCGUAUGAAUGCAAAAUGCUGGGACUUCAUGCCUG	chr1:44442339-44442578(+)$1	239	165	204	15.0083
AAAAAAUCUUCUUGGUUCUGCUACAAGUGAGUAUUUUGA	chr1:172548233-172548478(+)$1	245	148	187	14.0397
AUGCUUUUUGUUUUUUCUACAGAACCCAUAAAGAGCAUU	chr2:234754257-234754577(-)$1	320	277	316	17.3158
UGCCAGACUAAUUUUUUUCCCUUGGAAAAUGUGUCCAUG	chr12:93792415-93792678(+)$1	263	46	85	13.1614
UUUAAUGGGUUUUGUUCUUAUUUGAUAAGCUGAGCUCAA	chr7:882723-882985(+)$1	262	42	81	14.7252
GUGCAAGCCUUAAUGGAAAGAAAUUCAGAAUUACAGGCC	chr1:144912155-144912407(-)$1	252	131	170	11.7823
guuauuuuguagacuguaccucaguuGAUAGAAUAACGU	chr12:123665593-123665869(-)$1	276	33	72	13.2432
AGGCGGGCGCCUGGGCCGCACCACCCCUGGCCCCGCCUC	chr7:107531622-107531875(+)$1	253	207	246	14.6381
ACACAGUUUGUAAAUCAAUUUACUACACAAACUGUGGUU	chr7:12391220-12391488(-)$1	268	154	193	14.5561
UUGAUUAUUAGAUUGUGUUCAGCUUGUACAGUGGUGGUU	chr18:166636-166936(+)$1	300	83	122	13.5686
CUAGAAACCUUGCAAAGAGAAGGCUUUACAGUGUGUGAU	chr18:33749904-33750169(+)$1	265	69	108	12.8567
UAAACAUGAAGUUUCUGGAGAGACAGUGGUAUUUCAAGG	chr9:114153923-114154205(-)$1	282	104	143	14.3197
GUGAGCCAGACCUAAUGUCUUUUCUUUGUUUCUGGUCUA	chr1:145440670-145440910(+)$1	240	118	157	12.5295
GCACCCCGGGGAGUGGUGUUGGAAACCCGCGGAGGGGUG	chr4:80993378-80993680(-)$1	302	198	237	12.7462
UCGAGGUGUUGGAACAGGAGGAAUUGUUUCUACAGCAUU	chr1:109238549-109238799(+)$1	250	117	156	16.1664
GUUGUUUUUCAGAAAUCCAAAGCUUGUGGUGACUGAGAA	chr1:47767868-47768167(-)$1	299	137	176	13.4004

#DB
..((((....(((((((......)))))))....)))).	chr1:224492673-224492975(-)$1	1	107	146	13.7972
((((((((((..(((((.........)))))...))...	chr16:70572981-70573242(+)$1	1	4	43	13.7691
((((((((..(..(((........)))..)..)))))))	chr17:37590458-37590706(-)$1	1	33	72	14.9186
.(((((...(((((((.(((...))).)))))))....)	chr12:80172227-80172507(-)$1	1	216	255	12.7312
.((((((((((.((((((((((((.(((((.(((((((.	chr15:101826960-101827230(-)$1	1	160	199	13.1053
((((..(((((...(((....)))...)))))....)))	chr12:54687017-54687306(-)$1	1	60	99	11.7164
))).(((((((((..(((...)))...)))))))))(((	chrX:122757516-122757764(-)$1	1	179	218	14.3944
(.((((((..(((..(((....)))...)))...)))))	chr7:112098916-112099197(+)$1	1	18	57	13.0781
(((((((((...((.((....)).))..)))))))))))	chr2:61521991-61522283(-)$1	1	128	167	14.4376
(((((((((((((((((......))).)))).)))))))	chr9:131720163-131720463(+)$1	1	108	147	18.1675
.(((((((((((((..((....))..))))...))))))	chr5:138653300-138653557(+)$1	1	108	147	12.1629
(((((((((((((((........))).))))))))))))	chr7:104714969-104715236(+)$1	1	74	113	15.9110
((((...(((..((((......))))..)))..))))).	chr19:10505887-10506200(-)$1	1	240	279	13.2841
..(((((.((((..(((......)))..)))))))))..	chr3:9475403-9475658(+)$1	1	150	189	13.6958
(....(((((((((..(......)..))))))))))).)	chr19:42740958-42741263(-)$1	1	222	261	16.0696
(.(((((...((((.(((...))).))))...))))).)	chr14:53175052-53175353(+)$1	1	23	62	11.6769
.(((((((((.((.(.(((...)))).))...)))))))	chr2:15768420-15768692(+)$1	1	23	62	15.7279
((.(..(((((...(((.....)))...)))))..).))	chr21:40649135-40649380(-)$1	1	9	48	12.2353
((.....((((((((((......))))))))))...)))	chr12:80226118-80226374(-)$1	1	65	104	15.7077
..((.((((((((((((......)))))))))))).)).	chr3:47727483-47727733(-)$1	1	48	87	14.1781
((((...((....((((.........))))...))))))	chrX:48434780-48435035(+)$1	1	193	232	14.0170
((....(((..((((.((......)).)))).)))....	chr16:18809121-18809359(-)$1	1	31	70	11.7346
((((((....(((..((......))..)))..)))))))	chr17:37595275-37595564(-)$1	1	1	40	15.6032
(((((((((((....(((...)))...))))))))))))	chr5:158585925-158586152(-)$1	1	139	178	18.7799
.(((((((....(((((......))))).))))))).))	chr15:45479964-45480181(+)$1	1	110	149	14.7329
(((((((((...(((((....)))))...))))))))).	chr5:118437479-118437781(+)$1	1	241	280	15.1985
.((((((((((((((.........)))))))))))))).	chr1:212240102-212240361(+)$1	1	169	208	17.5139
(((((((((.....(((......)))....))))))).)	chr22:29194879-29195175(-)$1	1	122	161	15.6784
).((((((((((((((((....)))))))))))))))).	chr9:134107590-134107822(+)$1	1	156	195	14.9003
((((((((((((((((....)))))))))))..))))))	chr1:113464613-113464877(-)$1	1	66	105	12.4090
((((((.(((.(((((.....)))))..))).)))))))	chr6:36569634-36569912(+)$1	1	88	127	13.3454
((((((((((((((((((....)))))))))))))))))	chr9:132845705-132845985(+)$1	1	240	279	17.4484
((((.(((((((....(((....)))..))))))).)))	chr4:48533032-48533291(-)$1	1	132	171	12.2875
.((((.(((.((..(((......))).)).))).)))).	chr12:56552122-56552445(+)$1	1	44	83	13.6845
((((..((.(...(((.(((...))).)))...).))..	chr10:96117798-96118088(-)$1	1	89	128	14.7727
(((((((((((...............)))))))))))).	chr12:112479752-112480024(-)$1	1	77	116	15.2889
(.(.(.((((((((.((......)).)..))))))).).	chr1:44442339-44442578(+)$1	1	165	204	15.0083
((((...(((((((.........)))).)))..))))))	chr1:172548233-172548478(+)$1	1	148	187	14.0397
(((((((((((...(((....)))...))))))))))).	chr2:234754257-234754577(-)$1	1	277	316	17.3158
.(((((((..(((((((......)))))))..)))..))	chr12:93792415-93792678(+)$1	1	46	85	13.1614
((...(((((((.((((......))...)).))))))).	chr7:882723-882985(+)$1	1	42	81	14.7252
(((((.((((((((.(((.....)))...)))).)))).	chr1:144912155-144912407(-)$1	1	131	170	11.7823
((((((((((.(((((.....))))).))))))))))..	chr12:123665593-123665869(-)$1	1	33	72	13.2432
(((((((.(((.(((........)))..)))))))))))	chr7:107531622-107531875(+)$1	1	207	246	14.6381
.((((((((((...............))))))))))..)	chr7:12391220-12391488(-)$1	1	154	193	14.5561
(((((((((..((((((.........)))))))))))))	chr18:166636-166936(+)$1	1	83	122	13.5686
(.(((.((((((.((((......)))).))).).))..)	chr18:33749904-33750169(+)$1	1	69	108	12.8567
(...(.((((((..(((......)))....))))))..)	chr9:114153923-114154205(-)$1	1	104	143	14.3197
(((.((((((..(((.(......).)))..)))))).))	chr1:145440670-145440910(+)$1	1	118	157	12.5295
(((((((.....((((.(((...)))))))...))))))	chr4:80993378-80993680(-)$1	1	198	237	12.7462
..(((((((((((((((......))))))...)))))))	chr1:109238549-109238799(+)$1	1	117	156	16.1664
.))))(((((((..((((((...))).)))..)))))))	chr1:47767868-47768167(-)$1	1	137	176	13.4004

#PSSM
= : 0.24	i : 0.11	! : 0.09	e : 0.09	[ : 0.07	b : 0.07	f : 0.07	: : 0.03	" : 0.03	h : 0.03	g : 0.03	d : 0.01	c : 0.01	] : 0.01	
= : 0.30	i : 0.15	e : 0.09	[ : 0.07	d : 0.07	g : 0.05	! : 0.03	" : 0.03	h : 0.03	: : 0.03	f : 0.03	# : 0.01	b : 0.01	
= : 0.32	i : 0.15	e : 0.13	d : 0.09	g : 0.07	f : 0.03	# : 0.03	" : 0.03	[ : 0.01	$ : 0.01	b : 0.01	a : 0.01	c : 0.01	
= : 0.32	i : 0.15	d : 0.09	e : 0.09	g : 0.07	f : 0.03	# : 0.03	[ : 0.03	" : 0.03	: : 0.01	a : 0.01	$ : 0.01	b : 0.01	c : 0.01	
= : 0.28	i : 0.15	d : 0.07	" : 0.07	g : 0.07	e : 0.05	! : 0.05	f : 0.05	# : 0.03	[ : 0.03	a : 0.03	$ : 0.01	c : 0.01	
= : 0.32	i : 0.15	g : 0.13	[ : 0.09	e : 0.05	! : 0.05	" : 0.05	f : 0.03	d : 0.01	$ : 0.01	# : 0.01	c : 0.01	
= : 0.32	i : 0.13	g : 0.13	" : 0.07	e : 0.07	f : 0.05	c : 0.05	# : 0.03	b : 0.03	$ : 0.01	[ : 0.01	d : 0.01	
= : 0.32	i : 0.13	c : 0.11	g : 0.11	f : 0.05	b : 0.05	# : 0.03	" : 0.03	e : 0.03	[ : 0.03	d : 0.01	$ : 0.01	
= : 0.28	i : 0.13	c : 0.11	g : 0.09	# : 0.05	! : 0.05	b : 0.03	" : 0.03	e : 0.03	d : 0.03	f : 0.03	[ : 0.01	a : 0.01	$ : 0.01	
= : 0.26	! : 0.09	g : 0.09	i : 0.09	c : 0.09	# : 0.07	" : 0.05	e : 0.03	d : 0.03	$ : 0.03	f : 0.03	b : 0.01	[ : 0.01	a : 0.01	
= : 0.23	g : 0.13	d : 0.11	! : 0.09	c : 0.07	i : 0.05	" : 0.05	[ : 0.05	e : 0.03	# : 0.03	$ : 0.03	a : 0.01	b : 0.01	f : 0.01	
g : 0.13	d : 0.13	= : 0.13	" : 0.11	! : 0.07	c : 0.05	# : 0.05	f : 0.05	[ : 0.03	i : 0.03	b : 0.03	$ : 0.03	e : 0.03	x : 0.03	
d : 0.15	= : 0.13	e : 0.09	! : 0.09	c : 0.09	g : 0.07	" : 0.07	# : 0.05	i : 0.03	b : 0.03	x : 0.03	[ : 0.03	f : 0.03	$ : 0.01	
d : 0.19	= : 0.13	! : 0.13	e : 0.09	c : 0.09	g : 0.05	" : 0.05	b : 0.03	# : 0.03	x : 0.03	f : 0.03	i : 0.01	[ : 0.01	$ : 0.01	a : 0.01	
c : 0.26	= : 0.13	e : 0.09	! : 0.09	d : 0.09	[ : 0.07	g : 0.05	# : 0.03	x : 0.03	f : 0.03	a : 0.01	r : 0.01	b : 0.01	
c : 0.30	= : 0.11	e : 0.09	b : 0.07	d : 0.07	g : 0.05	[ : 0.05	! : 0.03	q : 0.03	r : 0.03	x : 0.03	f : 0.03	# : 0.01	
c : 0.30	b : 0.11	= : 0.09	e : 0.05	q : 0.05	[ : 0.05	g : 0.03	a : 0.03	d : 0.03	r : 0.03	n : 0.03	x : 0.03	f : 0.03	o : 0.01	m : 0.01	
o : 0.34	c : 0.21	r : 0.09	m : 0.09	q : 0.05	= : 0.05	n : 0.05	b : 0.03	x : 0.03	
o : 0.36	m : 0.17	c : 0.11	r : 0.09	n : 0.07	q : 0.05	l : 0.05	x : 0.03	= : 0.01	
o : 0.36	m : 0.19	r : 0.09	c : 0.07	l : 0.07	n : 0.07	q : 0.05	x : 0.03	= : 0.01	
o : 0.36	m : 0.17	l : 0.15	r : 0.09	n : 0.07	q : 0.05	= : 0.03	x : 0.03	
o : 0.36	r : 0.09	l : 0.09	c : 0.09	m : 0.09	q : 0.05	e : 0.05	= : 0.03	n : 0.03	x : 0.03	b : 0.01	
o : 0.34	c : 0.15	r : 0.09	l : 0.07	= : 0.07	q : 0.05	e : 0.05	b : 0.03	x : 0.03	d : 0.01	m : 0.01	n : 0.01	
c : 0.40	= : 0.11	r : 0.07	b : 0.07	e : 0.07	d : 0.05	g : 0.03	a : 0.03	x : 0.03	q : 0.01	] : 0.01	o : 0.01	f : 0.01	
c : 0.32	= : 0.11	b : 0.09	3 : 0.07	e : 0.07	r : 0.05	d : 0.05	g : 0.03	2 : 0.03	] : 0.03	x : 0.03	[ : 0.01	f : 0.01	
c : 0.28	3 : 0.13	= : 0.11	e : 0.09	d : 0.07	r : 0.05	2 : 0.05	g : 0.03	b : 0.03	x : 0.03	a : 0.01	] : 0.01	f : 0.01	
] : 0.17	3 : 0.17	= : 0.15	2 : 0.13	d : 0.11	e : 0.05	g : 0.03	c : 0.03	4 : 0.03	f : 0.03	i : 0.01	a : 0.01	
= : 0.23	2 : 0.15	d : 0.11	3 : 0.09	e : 0.07	c : 0.07	g : 0.05	i : 0.03	b : 0.03	4 : 0.03	] : 0.03	f : 0.03	
= : 0.24	c : 0.17	d : 0.13	g : 0.07	e : 0.07	2 : 0.05	b : 0.05	i : 0.03	3 : 0.03	4 : 0.03	f : 0.03	] : 0.01	
= : 0.24	c : 0.17	d : 0.13	g : 0.11	e : 0.07	i : 0.05	3 : 0.05	4 : 0.03	a : 0.01	] : 0.01	b : 0.01	f : 0.01	2 : 0.01	
= : 0.24	c : 0.13	3 : 0.13	g : 0.09	2 : 0.07	d : 0.07	e : 0.05	i : 0.05	f : 0.05	4 : 0.01	[ : 0.01	] : 0.01	
= : 0.24	3 : 0.17	2 : 0.13	g : 0.13	] : 0.07	i : 0.05	f : 0.05	e : 0.03	d : 0.03	4 : 0.01	c : 0.01	
= : 0.28	g : 0.17	i : 0.13	3 : 0.11	2 : 0.05	e : 0.05	c : 0.05	4 : 0.03	f : 0.03	d : 0.01	a : 0.01	
= : 0.28	g : 0.19	i : 0.15	3 : 0.05	e : 0.05	f : 0.05	] : 0.05	4 : 0.03	c : 0.03	2 : 0.01	b : 0.01	a : 0.01	
= : 0.28	g : 0.17	i : 0.15	f : 0.07	d : 0.05	b : 0.05	e : 0.05	4 : 0.03	c : 0.03	2 : 0.01	3 : 0.01	] : 0.01	
= : 0.28	g : 0.15	i : 0.13	b : 0.07	f : 0.07	d : 0.05	e : 0.05	4 : 0.03	] : 0.03	a : 0.01	3 : 0.01	> : 0.01	2 : 0.01	
= : 0.26	g : 0.11	i : 0.11	d : 0.07	e : 0.07	] : 0.07	2 : 0.07	b : 0.05	h : 0.03	f : 0.03	3 : 0.01	4 : 0.01	> : 0.01	
= : 0.24	i : 0.11	d : 0.09	g : 0.09	3 : 0.05	e : 0.05	h : 0.05	] : 0.05	2 : 0.05	f : 0.03	b : 0.03	4 : 0.01	> : 0.01	a : 0.01	: : 0.01	
= : 0.15	i : 0.09	] : 0.07	e : 0.07	2 : 0.07	b : 0.07	: : 0.07	3 : 0.05	h : 0.05	g : 0.05	f : 0.03	d : 0.03	! : 0.01	H : 0.01	> : 0.01	5 : 0.01	c : 0.01	a : 0.01	

#score	742.2197472201524
#seq	52
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_UTR_m1_run1.txt

#BEAR
ccc"""bb!!dddd"""annnnna333dddd22bb333cc	chr7:50860986-50861256(-)$1	270	104	144	12.7777
!a[a[a[a[a!!ffffffnnnnnffffff22a]a]a]a]a	chr2:118845958-118846225(+)$1	267	151	191	13.9156
$$ccc[a[bb$$$$$cccnnnnnccc4444bb]a]ccc33	chr15:64752849-64753145(+)$1	296	16	56	13.5432
iiiiiiiii[a####bbbbmmmmbb]bb333a]iiiiiii	chr3:42845817-42846087(-)$1	270	75	115	11.9007
dd"""dddd[hhhhhhhhnnnnnhhhhhhhhdddd]dddd	chr22:42229065-42229339(+)$1	274	9	49	11.7873
a####ddddccc[a[a[bbmmmmbb]a]a]ccc]dddd22	chr16:30134333-30134598(-)$1	265	203	243	12.3818
dddd[dddd[bb[eeeeennnnneeeee333bb]dddd]d	chr7:150756615-150756911(+)$1	296	173	213	13.2948
gggg[dddd####ccccccmmmmccc22ccc4444ddddg	chr1:184723819-184724082(-)$1	263	126	166	12.2808
ccc!!ccc!!a[bb[ccclllccc]bb]accc22ccc22a	chr19:39833023-39833277(+)$1	254	15	55	12.5637
a####dddd[ccc[ddddnnnnndddd]ccc22dddd333	chr12:30907473-30907727(-)$1	254	80	120	15.7930
d####dddd==========lll==========]dddd]dd	chr3:12705365-12705647(-)$1	282	102	142	13.9341
cc!!eeeeeddddccc[annnnna]ccc22dddd22eeee	chr1:16939857-16940138(-)$1	281	176	216	13.1632
ggg[eeeee!!a[a[ddddmmmmddddaa22eeeee22gg	chr6:166755853-166756149(-)$1	296	220	260	11.7195
dd!!ggggggg"""ddddlllddddggggggg22dddd]d	chr19:5719967-5720250(-)$1	283	83	123	12.1923
[ggggggg[a[bb[cccooooooccc]bb]a22ggggggg	chr19:18547571-18547847(-)$1	276	115	155	13.4950
!a!!eeeee[ccca[bboooooobb]a]ccc]eeeee22a	chr6:88411757-88412022(-)$1	265	89	129	13.6610
bbdddd[gggggggddddoooooodddd22gggggggddd	chr5:133707153-133707365(+)$1	212	28	68	12.6947
[a[dddd[dddd[bb[bboooooobbbbdddddddd]a]c	chr1:52195390-52195699(+)$1	309	267	307	11.7273
##a!!ffffff####cccooooooccc4444ffffff22a	chr19:6739607-6739900(+)$1	293	161	201	14.6503
[dddd[dddddddd[a[ccclllccc]a]dddd]dddd22	chr21:38445482-38445750(+)$1	268	15	55	11.8523
"""dddddddddddd!!annnnna]dddd22dddd]dddd	chr20:49307563-49307864(-)$1	301	141	181	13.3352
b[ddddccc[ccc[ddddllldddd]ccc]ccc]dddd]b	chr1:235491351-235491595(-)$1	244	80	120	11.6407
ddd!!iiiiiiiii[cccooooooccciiiiiiiii4444	chr15:91445771-91446030(+)$1	259	153	193	14.7367
d####dddd[dddd[bboooooobb]dddd]dddd]dddd	chr6:31797697-31797948(+)$1	251	46	86	12.9108
!bb[dddd[a!!cccccclllccc]ccc22a]dddd]bbc	chr7:26240257-26240499(-)$1	242	132	172	12.6038
b####ggggggg!!eeeeeooooooeeeeeggggggg22b	chr1:109289227-109289509(+)$1	282	61	101	12.5987
=========$$$$$ddddnnnnndddd333==========	chr2:111435459-111435729(-)$1	270	99	139	15.2277
hhhhhhh[a####eeeeennnnneeeee333a]hhhhhhh	chr6:31619946-31620222(-)$1	276	8	48	12.7114
dddd[ffffff"""ddddnnnnnddddffffff]ddddcc	chr19:39926441-39926688(-)$1	247	158	198	12.3086
c[ffffff!!ccc[a[cccmmmmccc]a]ccc333fffff	chr1:109825592-109825852(-)$1	260	5	45	11.0023
[a[ccc[a####a!!cccnnnnnccc22a22a]ccc]a]d	chr10:129924495-129924745(-)$1	250	50	90	16.2414
gg####ccc[ccc!!eeeeellleeeeeccc]cccggggg	chr7:5569352-5569615(-)$1	263	120	160	12.3005
$$$$ccc"""ccc[eeeeennnnneeeee]ccc22ccc44	chr1:28832457-28832687(+)$1	230	80	120	12.1693
bb[ggggggg!!addddnnnnndddd]a22ggggggg333	chr5:179050414-179050686(-)$1	272	168	208	13.5700
dda[iiiiiiiii[bbaccclllccc]a]bb]iiiiiiii	chr18:77867064-77867406(+)$1	342	186	226	12.1334
gggg!!bb[ccc!!ddddnnnnndddd4444ccc]bb666	chr8:100025419-100025665(+)$1	246	42	82	12.5835
::dddd[dddd[bb[cccnnnnnccc]bb]dddd]ddddh	chr19:1104627-1104870(+)$1	243	95	135	11.5771
:bb[a[ffffff"""cccooooooccc333ffffff]abb	chr1:894494-894738(-)$1	244	119	159	12.6291
bb"""dddd[bb!!cccooooooccc22bbdddd333bbF	chr19:56166205-56166472(+)$1	267	174	214	12.8630
####bb[ccc[eeeeebboooooobb]eeeee]ccc333b	chr3:195808608-195808869(-)$1	261	74	114	12.6086
[bb[bb[a!!dddd[ddddnnnnndddd333dddd22a22	chr13:115000302-115000568(+)$1	266	169	209	13.4704
fhhhhhhhh[agggggggnnnnnggggggg333a]hhhhh	chr1:202976424-202976705(+)$1	281	114	154	12.2108
ddd[eeeee$$$$$ddddoooooodddd22eeeeedddd]	chr2:74405843-74406102(-)$1	259	137	177	12.5012
[bb[bb[dddd[bb!!cccooooooccc22bb]dddd]bb	chr2:230786504-230786756(-)$1	252	85	125	11.9445
$hhhhhhhh!!ddddcccnnnnnccc]dddd333hhhhhh	chr7:154794540-154794786(-)$1	246	92	132	12.5190
cc[a[eeeee[ccc[cccnnnnnccc]ccc22eeeee]a2	chr3:122785815-122786174(+)$1	359	218	258	14.4205
[a"""dddd[ccca[cccnnnnnccc]a22cccdddda]=	chr15:42867759-42868022(+)$1	263	139	179	17.3293
hhhh!!eeeee!!eeeeennnnneeeee333eeeeehhhh	chrX:102940055-102940313(-)$1	258	13	53	12.6599
b[a!!a[dddd[bb[cccoooooocccbbdddd]a22a]b	chr5:137688338-137688618(+)$1	280	110	150	13.6539
hhhhhhh[a####a[cccnnnnnccc]a4444a]hhhhhh	chr9:101558621-101558914(-)$1	293	28	68	14.4288
[bb!!cccddddeeeeeooooooeeeee4444dddd]ccc	chr2:139259405-139259702(+)$1	297	128	168	13.3946
e####ccc!!gggggggooooooggggggg4444ccc444	chr6:17615455-17615695(-)$1	240	79	119	14.7159
:bb!!ffffffddddcccnnnnnccc333dddd]ffffff	chr2:98262433-98262715(+)$1	282	84	124	12.3004
[bb[bb[cccccc[bb[annnnna]bb]ccc]ccc]bbbb	chr1:1243139-1243406(-)$1	267	17	57	11.9840
bb!!dddd[ggggggg[ccclllcccggggggg]dddd22	chr22:38902069-38902317(-)$1	248	29	69	12.7666
$$$dddd"""ddddddddoooooodddd]dddd]dddd22	chrX:77359654-77359919(+)$1	265	174	214	12.8207
==]bbccc!!gggggggooooooggggggg]cccgggggg	chr1:162467538-162467821(+)$1	283	125	165	12.4044
=====dddd[bb[bb[bbnnnnnbb]bbbb]dddd22===	chr2:62932848-62933154(+)$1	306	89	129	11.8336
cc"""a[eeeee####bboooooobb22eeeee]a333cc	chr12:56435825-56436138(+)$1	313	141	181	13.1110
dd[ggggggg[a[ddddoooooodddda]gggggggdddd	chr5:133707165-133707394(+)$1	229	17	57	13.1706

#otherMatches

#Seq PSSM
UCGGGAGGAGGCAGAGAGGGAAGCGAGCUGCGGCCGGGCG	chr7:50860986-50861256(-)$1	270	104	144	12.7777
AGGCGGGGGUGAGUUGGGGGUCUCCCGGCGAAGCGCGGGU	chr2:118845958-118846225(+)$1	267	151	191	13.9156
gaggcgcggggagggggcagagagccagagccggagccgg	chr15:64752849-64753145(+)$1	296	16	56	13.5432
CUGUGGGUGGGGAGAAGCCGGGAGGACUGGGUGCGCCUGC	chr3:42845817-42846087(-)$1	270	75	115	11.9007
ggcgcgggcuggggcgggggAAUCCCGCCCCGCCCUUUCU	chr22:42229065-42229339(+)$1	274	9	49	11.7873
CAGUACAUCGGCGAGGGCGCGUACGGCAUGGUCAGGUGAG	chr16:30134333-30134598(-)$1	265	203	243	12.3818
GUGCGCCGGAGGACGGGGAGAGACCCCGAGACCCCCGGGG	chr7:150756615-150756911(+)$1	296	173	213	13.2948
CUGGCGCUGGGGACCGGCUUGGUGGCUUCGGGAAACAGUU	chr1:184723819-184724082(-)$1	263	126	166	12.2808
gcggggccaggggcggugacgcacggcgcggugacgcagc	chr19:39833023-39833277(+)$1	254	15	55	12.5637
GAGGGAGGCGGCUGACCCGGCGAGGGUGGGCAGGUCUGGG	chr12:30907473-30907727(-)$1	254	80	120	15.7930
UUUCUGCUGCCUUUUUUGGGCCCCGAAAAGGGUCAGCUGG	chr3:12705365-12705647(-)$1	282	102	142	13.9341
CGAGCGCGGUGCUUUUGGGAACGCGGGACGGGCGAUCUGC	chr1:16939857-16940138(-)$1	281	176	216	13.1632
AGGAGCAGGGCCUGACUGCGCAGGUAGCGAACUUGCGCCC	chr6:166755853-166756149(-)$1	296	220	260	11.7195
GUGAGCCGCCAGUAUGGCCGGGCUAUGGCGGCGAGCACUG	chr19:5719967-5720250(-)$1	283	83	123	12.1923
AGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUCCC	chr19:18547571-18547847(-)$1	276	115	155	13.4950
GGAAGCGGUUGGACGUGUUCGCUUGGGUUCCUGCUGCGGC	chr6:88411757-88412022(-)$1	265	89	129	13.6610
gcggcggcggcggcgAUCCACAGUGAUUcggccgccgcgc	chr5:133707153-133707365(+)$1	212	28	68	12.6947
GCUGGCCACUUGCGGAGUGAGUAGACCCCGAGGGUCUGGG	chr1:52195390-52195699(+)$1	309	267	307	11.7273
CAGCAUGGAUUGGGGCACUGAGCUGUGGGUAAGUCCAAUC	chr19:6739607-6739900(+)$1	293	161	201	14.6503
UGCGACUGCGCACGCGCGCUGCCAGCCCACGUGACGCACC	chr21:38445482-38445750(+)$1	268	15	55	11.8523
AAGUGAGGCAGCUGCAAGGAGGGCGGCGGGACUGCACUCG	chr20:49307563-49307864(-)$1	301	141	181	13.3352
AGUCGGUGGGGGGGAAGCGAUGUUUGCCCGUCAGUCGAGU	chr1:235491351-235491595(-)$1	244	80	120	11.6407
CAggccggggcgggcggcgcggcUGUCCCCGCCCCGCACG	chr15:91445771-91446030(+)$1	259	153	193	14.7367
GCUCUUUGCUGCUUCACUUCUUUGUAAAGUUGUAACCUGA	chr6:31797697-31797948(+)$1	251	46	86	12.9108
CAGUAGCAGCAGCGCCGGGUCCCGUGCGGAGGUGCUCCUC	chr7:26240257-26240499(-)$1	242	132	172	12.6038
CAACGCCGCUUCUGCGGCCAAAGUAGGUUGGGAGUGGAAG	chr1:109289227-109289509(+)$1	282	61	101	12.5987
GCGGCGGCUUCUAGUUUGCGGUUCAGGUUUGGCCGCUGCC	chr2:111435459-111435729(-)$1	270	99	139	15.2277
GCCGUCGGUGGCAGGUUUGGGGGAGACCGGAAGUGACGGU	chr6:31619946-31620222(-)$1	276	8	48	12.7114
GUCCAAGGGCCCGCUGCAGUCUGUGCAGGUCUUCGGACGC	chr19:39926441-39926688(-)$1	247	158	198	12.3086
GAUUCACCAAUCACGGUGCGCGUGUGGCUUGAGUAGGUGG	chr1:109825592-109825852(-)$1	260	5	45	11.0023
GGGCUGGAAGAAGGAAGUGGAGGGCUGACGCUgcgggcgg	chr10:129924495-129924745(-)$1	250	50	90	16.2414
GGGCCUGGCUUCCUGCCGCGCGCCGCGGGGACGCCUCCGA	chr7:5569352-5569615(-)$1	263	120	160	12.3005
CUUCGCGUUUUCUCUCUCCUUUUUGGAGACAGAUUCGCAG	chr1:28832457-28832687(+)$1	230	80	120	12.1693
GCCGUCGAGAGCCGCGAGUGGUUCGCUGAAUCUCGGCACC	chr5:179050414-179050686(-)$1	272	168	208	13.5700
cgggcgggcgcaggcggccccACGGGACGCGGCUGCGCUC	chr18:77867064-77867406(+)$1	342	186	226	12.1334
UUUUGAGCACCAAGUGGGACACACCCGGAAGUGGCGCGGU	chr8:100025419-100025665(+)$1	246	42	82	12.5835
GACGGGCGGGUAUGGGCCGCGCGGGCGCAGGCUCCCCCGG	chr19:1104627-1104870(+)$1	243	95	135	11.5771
UGGCAGCUGCGGGGAGCCGCAAGAGGUAAGCCGCGGGUCC	chr1:894494-894738(-)$1	244	119	159	12.6291
GCCGAAGCCAGCGGCGGAAGUAGCCGAAGCGGCUGGAGCG	chr19:56166205-56166472(+)$1	267	174	214	12.8630
GAAAGCGGUCGCGGCCCCAGGCGGGGCGGCCGGGAUGGAG	chr3:195808608-195808869(-)$1	261	74	114	12.6086
ACGGGCACGGGCACGGGGCGGGGUGCUUAGGGUGCAGGAG	chr13:115000302-115000568(+)$1	266	169	209	13.4704
CGGAGCCGGGCGGAGCUGGCUUGCGGCUCCCGGGGCCGGC	chr1:202976424-202976705(+)$1	281	114	154	12.2108
CCGAGGUUUGCAAAGGCUCGCAGCGGCCAGAAACCCGGCU	chr2:74405843-74406102(-)$1	259	137	177	12.5012
ggggggggUGGGGGGAGCUAGUGGAAGUUACUGCCGCGCC	chr2:230786504-230786756(-)$1	252	85	125	11.9445
gcggggggugggcggggccgggcgccgccgcggagCCUCC	chr7:154794540-154794786(-)$1	246	92	132	12.5190
GGCUGCUGCUGGCAAUCUGGGUGAGACUGUGGGGCAGGGA	chr3:122785815-122786174(+)$1	359	218	258	14.4205
GGUUGUGGCAGACGGAUGGCGAACGUGCAGGUCGCCGUGC	chr15:42867759-42868022(+)$1	263	139	179	17.3293
AGCUUUGGUGUCCUUUGUGUGUGAUGAAAUUGCAUUGGCU	chrX:102940055-102940313(-)$1	258	13	53	12.6599
cggcgggcgggagcgcgggucaggccggccccggcgaugg	chr5:137688338-137688618(+)$1	280	110	150	13.6539
UAggcgcgcggcgcgggcggguggccggaagggggcgccu	chr9:101558621-101558914(-)$1	293	28	68	14.4288
GGGAUGCGGUUCGGCGGAGGCGGCCGCCACAGGGACUUGC	chr2:139259405-139259702(+)$1	297	128	168	13.3946
CUUGAAAUUUGAAUUUUGUGUUAGAGAUUUUUUUGUUGUU	chr6:17615455-17615695(-)$1	240	79	119	14.7159
UCCCGGAAGUUUUGCUGCUAGUCGCGGACGCAAUGGCUUC	chr2:98262433-98262715(+)$1	282	84	124	12.3004
GGGCGGUGCGCGCGGGCGGCUGACUUUGGCGACGCUCCCC	chr1:1243139-1243406(-)$1	267	17	57	11.9840
GGAGACGCCUAAACCGCGGCACUGCCCGGUUUGAGCGUAG	chr22:38902069-38902317(-)$1	248	29	69	12.7666
AUUUCCAAAAUGUCGCUUUCUAACAAGCUGACGCUGGACA	chrX:77359654-77359919(+)$1	265	174	214	12.8207
GGUGAGGCGGCUGCAGGUCCCUCCCUGCGGAGCCGCUGGU	chr1:162467538-162467821(+)$1	283	125	165	12.4044
GCAGGGCUUGGUAGGGUGGGGGACGGUCGCGGGGCGAUCU	chr2:62932848-62933154(+)$1	306	89	129	11.8336
CGUGGUGAGGGUGGGGGUUCGGGUGCAGACUCUGGGAUUG	chr12:56435825-56436138(+)$1	313	141	181	13.1110
cggcggcggcggcgAUCCACAGUGAUUcggccgccgcgcc	chr5:133707165-133707394(+)$1	229	17	57	13.1706

#DB
(((...((..((((...(.....)...))))..))...))	chr7:50860986-50861256(-)$1	1	104	144	12.7777
.(.(.(.(.(..((((((.....))))))..).).).).)	chr2:118845958-118846225(+)$1	1	151	191	13.9156
..(((.(.((.....(((.....)))....)).).)))..	chr15:64752849-64753145(+)$1	1	16	56	13.5432
(((((((((.(....((((....)).))...).)))))))	chr3:42845817-42846087(-)$1	1	75	115	11.9007
((...((((.((((((((.....)))))))))))).))))	chr22:42229065-42229339(+)$1	1	9	49	11.7873
(....(((((((.(.(.((....)).).).))).))))..	chr16:30134333-30134598(-)$1	1	203	243	12.3818
((((.((((.((.(((((.....)))))...)).)))).)	chr7:150756615-150756911(+)$1	1	173	213	13.2948
((((.((((....((((((....)))..)))....)))))	chr1:184723819-184724082(-)$1	1	126	166	12.2808
(((..(((..(.((.(((...))).)).))))..)))..)	chr19:39833023-39833277(+)$1	1	15	55	12.5637
(....((((.(((.((((.....)))).)))..))))...	chr12:30907473-30907727(-)$1	1	80	120	15.7930
(....((((((((((((((...)))))))))).)))).))	chr3:12705365-12705647(-)$1	1	102	142	13.9341
((..((((((((((((.(.....).)))..))))..))))	chr1:16939857-16940138(-)$1	1	176	216	13.1632
(((.(((((..(.(.((((....))))))..)))))..))	chr6:166755853-166756149(-)$1	1	220	260	11.7195
((..(((((((...((((...)))))))))))..)))).)	chr19:5719967-5720250(-)$1	1	83	123	12.1923
.(((((((.(.((.(((......))).)).)..)))))))	chr19:18547571-18547847(-)$1	1	115	155	13.4950
.(..(((((.((((.((......)).).))).)))))..)	chr6:88411757-88412022(-)$1	1	89	129	13.6610
))((((.(((((((((((......))))..))))))))))	chr5:133707153-133707365(+)$1	1	28	68	12.6947
.(.((((.((((.((.((......)))))))))))).).)	chr1:52195390-52195699(+)$1	1	267	307	11.7273
..(..((((((....(((......)))....))))))..)	chr19:6739607-6739900(+)$1	1	161	201	14.6503
.((((.((((((((.(.(((...))).).)))).))))..	chr21:38445482-38445750(+)$1	1	15	55	11.8523
...((((((((((((..(.....).))))..)))).))))	chr20:49307563-49307864(-)$1	1	141	181	13.3352
(.(((((((.(((.((((...)))).))).))).)))).)	chr1:235491351-235491595(-)$1	1	80	120	11.6407
(((..(((((((((.(((......))))))))))))....	chr15:91445771-91446030(+)$1	1	153	193	14.7367
(....((((.((((.((......)).)))).)))).))))	chr6:31797697-31797948(+)$1	1	46	86	12.9108
.((.((((.(..((((((...))).)))..).)))).)))	chr7:26240257-26240499(-)$1	1	132	172	12.6038
(....(((((((..(((((......))))))))))))..)	chr1:109289227-109289509(+)$1	1	61	101	12.5987
(((((((((.....((((.....))))...))))))))))	chr2:111435459-111435729(-)$1	1	99	139	15.2277
(((((((.(....(((((.....)))))...).)))))))	chr6:31619946-31620222(-)$1	1	8	48	12.7114
((((.((((((...((((.....)))))))))).))))))	chr19:39926441-39926688(-)$1	1	158	198	12.3086
(.((((((..(((.(.(((....))).).)))...)))))	chr1:109825592-109825852(-)$1	1	5	45	11.0023
.(.(((.(....(..(((.....)))..)..).))).).)	chr10:129924495-129924745(-)$1	1	50	90	16.2414
((....(((.(((..(((((...)))))))).))))))))	chr7:5569352-5569615(-)$1	1	120	160	12.3005
....(((...(((.(((((.....))))).)))..)))..	chr1:28832457-28832687(+)$1	1	80	120	12.1693
((.(((((((..(((((.....)))).)..)))))))...	chr5:179050414-179050686(-)$1	1	168	208	13.5700
(((.(((((((((.((((((...))).).)).))))))))	chr18:77867064-77867406(+)$1	1	186	226	12.1334
((((..((.(((..((((.....))))....))).))...	chr8:100025419-100025665(+)$1	1	42	82	12.5835
..((((.((((.((.(((.....))).)).)))).))))(	chr19:1104627-1104870(+)$1	1	95	135	11.5771
.((.(.((((((...(((......)))...)))))).)))	chr1:894494-894738(-)$1	1	119	159	12.6291
((...((((.((..(((......)))..))))))...)))	chr19:56166205-56166472(+)$1	1	174	214	12.8630
....((.(((.(((((((......)).))))).)))...)	chr3:195808608-195808869(-)$1	1	74	114	12.6086
.((.((.(..((((.((((.....))))...))))..)..	chr13:115000302-115000568(+)$1	1	169	209	13.4704
)((((((((.((((((((.....)))))))...).)))))	chr1:202976424-202976705(+)$1	1	114	154	12.2108
(((.(((((.....((((......))))..))))))))).	chr2:74405843-74406102(-)$1	1	137	177	12.5012
.((.((.((((.((..(((......)))..)).)))).))	chr2:230786504-230786756(-)$1	1	85	125	11.9445
.((((((((..(((((((.....))).))))...))))))	chr7:154794540-154794786(-)$1	1	92	132	12.5190
((.(.(((((.(((.(((.....))).)))..))))).).	chr3:122785815-122786174(+)$1	1	218	258	14.4205
.(...((((.((((.(((.....))).)..)))))))).)	chr15:42867759-42868022(+)$1	1	139	179	17.3293
((((..(((((..(((((.....)))))...)))))))))	chrX:102940055-102940313(-)$1	1	13	53	12.6599
(.(..(.((((.((.(((......))))))))).)..).)	chr5:137688338-137688618(+)$1	1	110	150	13.6539
(((((((.(....(.(((.....))).)....).))))))	chr9:101558621-101558914(-)$1	1	28	68	14.4288
.((..((((((((((((......)))))....)))).)))	chr2:139259405-139259702(+)$1	1	128	168	13.3946
(....(((..(((((((......)))))))....)))...	chr6:17615455-17615695(-)$1	1	79	119	14.7159
.((..(((((((((((((.....)))...)))).))))))	chr2:98262433-98262715(+)$1	1	84	124	12.3004
.((.((.((((((.((.(.....).)).))).))).))))	chr1:1243139-1243406(-)$1	1	17	57	11.9840
((..((((.(((((((.(((...)))))))))).))))..	chr22:38902069-38902317(-)$1	1	29	69	12.7666
...((((...((((((((......)))).)))).))))..	chrX:77359654-77359919(+)$1	1	174	214	12.8207
)).))(((..(((((((......))))))).)))((((((	chr1:162467538-162467821(+)$1	1	125	165	12.4044
(((((((((.((.((.((.....)).)))).))))..)))	chr2:62932848-62933154(+)$1	1	89	129	11.8336
((...(.(((((....((......))..))))).)...))	chr12:56435825-56436138(+)$1	1	141	181	13.1110
((.(((((((.(.((((......))))).)))))))))))	chr5:133707165-133707394(+)$1	1	17	57	13.1706

#PSSM
d : 0.16	[ : 0.15	b : 0.11	c : 0.09	$ : 0.06	g : 0.06	! : 0.05	= : 0.05	h : 0.05	: : 0.05	a : 0.03	# : 0.03	i : 0.01	" : 0.01	f : 0.01	e : 0.01	
b : 0.18	d : 0.15	# : 0.13	c : 0.08	a : 0.08	g : 0.08	h : 0.08	$ : 0.05	[ : 0.05	= : 0.05	i : 0.01	" : 0.01	: : 0.01	
# : 0.13	d : 0.13	b : 0.11	[ : 0.09	" : 0.08	h : 0.08	g : 0.06	! : 0.06	c : 0.05	a : 0.05	= : 0.03	$ : 0.03	i : 0.01	f : 0.01	] : 0.01	
! : 0.16	d : 0.15	# : 0.13	[ : 0.13	" : 0.08	g : 0.08	h : 0.08	a : 0.03	c : 0.03	= : 0.03	i : 0.01	f : 0.01	$ : 0.01	b : 0.01	
d : 0.15	! : 0.13	# : 0.11	" : 0.08	[ : 0.08	b : 0.08	e : 0.06	g : 0.06	h : 0.06	c : 0.05	i : 0.03	= : 0.03	f : 0.01	a : 0.01	
d : 0.30	c : 0.09	e : 0.08	g : 0.08	f : 0.06	h : 0.06	b : 0.06	a : 0.05	[ : 0.05	i : 0.05	! : 0.03	" : 0.01	= : 0.01	# : 0.01	
d : 0.26	[ : 0.16	c : 0.11	e : 0.09	g : 0.08	f : 0.08	h : 0.06	i : 0.05	b : 0.03	a : 0.01	= : 0.01	
d : 0.28	c : 0.13	e : 0.11	g : 0.09	f : 0.08	[ : 0.06	a : 0.05	i : 0.05	b : 0.03	" : 0.03	h : 0.03	= : 0.01	
d : 0.28	e : 0.11	! : 0.09	[ : 0.08	g : 0.08	f : 0.06	c : 0.06	i : 0.05	a : 0.03	" : 0.03	h : 0.03	b : 0.01	= : 0.01	# : 0.01	
[ : 0.19	! : 0.13	d : 0.13	g : 0.09	c : 0.06	# : 0.06	f : 0.06	a : 0.05	e : 0.05	i : 0.03	$ : 0.03	" : 0.03	b : 0.01	= : 0.01	
d : 0.19	c : 0.16	g : 0.09	! : 0.08	# : 0.06	[ : 0.06	f : 0.06	$ : 0.05	a : 0.05	b : 0.05	i : 0.03	e : 0.03	h : 0.01	= : 0.01	
d : 0.18	c : 0.18	# : 0.09	g : 0.09	! : 0.06	b : 0.06	[ : 0.06	$ : 0.05	a : 0.03	" : 0.03	i : 0.03	e : 0.03	h : 0.01	= : 0.01	f : 0.01	
c : 0.16	d : 0.15	# : 0.09	[ : 0.09	b : 0.08	g : 0.08	! : 0.06	$ : 0.05	" : 0.05	i : 0.03	a : 0.03	e : 0.03	f : 0.01	h : 0.01	= : 0.01	
d : 0.16	[ : 0.11	b : 0.09	a : 0.08	e : 0.08	g : 0.08	! : 0.08	c : 0.06	$ : 0.05	# : 0.05	" : 0.05	f : 0.01	h : 0.01	= : 0.01	i : 0.01	
d : 0.23	[ : 0.21	e : 0.11	c : 0.08	b : 0.06	g : 0.06	# : 0.05	! : 0.05	" : 0.03	f : 0.01	$ : 0.01	h : 0.01	= : 0.01	a : 0.01	
c : 0.30	d : 0.21	e : 0.13	b : 0.08	g : 0.06	[ : 0.05	a : 0.03	! : 0.03	" : 0.01	f : 0.01	h : 0.01	= : 0.01	# : 0.01	
c : 0.31	d : 0.21	b : 0.11	e : 0.11	[ : 0.08	g : 0.05	" : 0.01	f : 0.01	h : 0.01	= : 0.01	! : 0.01	a : 0.01	
c : 0.33	d : 0.18	o : 0.13	b : 0.09	e : 0.09	a : 0.06	f : 0.01	h : 0.01	= : 0.01	n : 0.01	g : 0.01	
n : 0.39	o : 0.30	c : 0.09	l : 0.06	e : 0.05	b : 0.03	d : 0.03	= : 0.01	
n : 0.43	o : 0.33	m : 0.08	l : 0.08	c : 0.05	e : 0.01	
n : 0.43	o : 0.33	l : 0.15	m : 0.08	
n : 0.43	o : 0.33	m : 0.08	l : 0.08	c : 0.03	d : 0.03	
n : 0.41	o : 0.33	m : 0.08	l : 0.06	d : 0.05	c : 0.03	= : 0.01	
c : 0.28	o : 0.19	d : 0.15	b : 0.08	e : 0.08	a : 0.06	g : 0.05	n : 0.03	f : 0.01	h : 0.01	= : 0.01	
c : 0.31	d : 0.21	b : 0.13	e : 0.09	] : 0.08	g : 0.05	o : 0.03	3 : 0.01	f : 0.01	h : 0.01	= : 0.01	
c : 0.36	d : 0.19	e : 0.11	] : 0.09	b : 0.08	g : 0.06	3 : 0.01	f : 0.01	h : 0.01	= : 0.01	
d : 0.19	] : 0.18	c : 0.13	e : 0.11	b : 0.08	g : 0.08	2 : 0.06	3 : 0.03	a : 0.03	f : 0.01	4 : 0.01	h : 0.01	= : 0.01	
d : 0.13	e : 0.13	a : 0.13	b : 0.09	] : 0.08	c : 0.08	g : 0.08	2 : 0.06	4 : 0.05	3 : 0.05	f : 0.03	h : 0.01	= : 0.01	i : 0.01	
3 : 0.13	c : 0.11	2 : 0.11	d : 0.08	4 : 0.08	g : 0.08	b : 0.08	] : 0.08	a : 0.06	e : 0.06	f : 0.03	h : 0.01	= : 0.01	i : 0.01	
2 : 0.18	d : 0.13	c : 0.13	3 : 0.11	g : 0.09	4 : 0.08	] : 0.08	e : 0.05	b : 0.05	h : 0.01	= : 0.01	i : 0.01	f : 0.01	
c : 0.18	d : 0.16	3 : 0.09	g : 0.09	2 : 0.08	4 : 0.08	b : 0.05	] : 0.05	e : 0.05	= : 0.03	a : 0.03	f : 0.03	h : 0.01	i : 0.01	
d : 0.21	c : 0.13	g : 0.09	e : 0.08	] : 0.08	2 : 0.06	a : 0.06	4 : 0.06	b : 0.05	f : 0.05	= : 0.03	3 : 0.03	i : 0.01	
d : 0.24	] : 0.13	c : 0.13	e : 0.09	2 : 0.08	g : 0.08	f : 0.05	3 : 0.05	4 : 0.03	i : 0.03	b : 0.01	= : 0.01	a : 0.01	
d : 0.24	] : 0.18	c : 0.09	e : 0.08	g : 0.08	a : 0.05	i : 0.05	2 : 0.05	4 : 0.03	f : 0.03	3 : 0.03	b : 0.01	= : 0.01	h : 0.01	
d : 0.33	c : 0.09	g : 0.09	] : 0.08	e : 0.08	i : 0.05	f : 0.05	h : 0.05	2 : 0.03	3 : 0.03	a : 0.03	b : 0.01	4 : 0.01	= : 0.01	
d : 0.30	g : 0.11	c : 0.09	] : 0.06	2 : 0.06	e : 0.06	f : 0.06	h : 0.06	3 : 0.05	i : 0.05	a : 0.01	= : 0.01	b : 0.01	
d : 0.31	] : 0.09	g : 0.09	h : 0.08	3 : 0.06	c : 0.06	2 : 0.06	e : 0.05	f : 0.05	i : 0.03	b : 0.03	4 : 0.01	= : 0.01	
d : 0.26	a : 0.11	3 : 0.08	2 : 0.08	h : 0.08	c : 0.05	] : 0.05	g : 0.05	b : 0.05	i : 0.03	4 : 0.03	= : 0.03	f : 0.03	e : 0.01	6 : 0.01	
d : 0.15	2 : 0.15	] : 0.13	b : 0.08	h : 0.08	c : 0.06	3 : 0.06	g : 0.06	4 : 0.05	i : 0.03	= : 0.03	f : 0.03	e : 0.01	6 : 0.01	a : 0.01	
d : 0.15	b : 0.11	c : 0.09	2 : 0.09	h : 0.09	g : 0.08	a : 0.06	3 : 0.05	4 : 0.05	= : 0.05	i : 0.03	f : 0.03	e : 0.01	6 : 0.01	F : 0.01	] : 0.01	

#score	780.7230165493751
#seq	60
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF261SMW_DDX6_UTR_m1_run2.txt

#BEAR
ggggggg[dddduuuuuuuuuuuudddd]gggg	chr17:76168566-76168832(+)$1	266	206	239	25.2115
$$$$$eeeee[attttttttttta]eeeee444	chr7:139257475-139257745(-)$1	270	121	154	21.7255
ee!!ggggggguuuuuuuuuuuugggggggeee	chr19:1257840-1258109(+)$1	269	69	102	23.1873
ff####bb[ddddtttttttttttdddd]bbff	chr14:69847080-69847336(-)$1	256	204	237	21.5803
[ccc!!ffffffuuuuuuuuuuuuffffff22c	chr9:127998636-127998910(-)$1	274	81	114	22.6124
f[ccc!!ddddtttttttttttdddd4444ccc	chr1:92146175-92146469(-)$1	294	49	82	21.7770
cc:ccc[bb[ccctttttttttttccc]bbccc	chr6:7249213-7249479(+)$1	266	194	227	20.4191
hh[a[cccyyyyyyyyyyyyyyyycccahhhhh	chr14:32546301-32546554(+)$1	253	40	73	22.6853
ggg!!ddddxxxxxxxxxxxxxxxdddd]gggg	chr17:37903203-37903503(+)$1	300	78	111	21.4625
ddd[ccc[cccwwwwwwwwwwwwwwccc]ccc2	chr2:171574020-171574265(+)$1	245	202	235	23.7713
b[dddd^^^^^^^^^^^^^^^^^^dddd]bb]c	chr2:10923936-10924157(-)$1	221	136	169	18.8052
b[dddd^^^^^^^^^^^^^^^^^^dddd]bb]c	chr2:10923957-10924223(-)$1	266	202	235	18.8052
eeeee####ddddtttttttttttdddd4444e	chr19:42752313-42752542(-)$1	229	55	88	22.2240
:::iiiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr17:21218101-21218388(+)$1	287	251	284	21.8295
===========xxxxxxxxxxxxxxx=======	chr6:160527092-160527359(+)$1	267	214	247	21.7560
ccc[ccc[dddduuuuuuuuuuuudddd]ccc]	chr11:2150274-2150523(-)$1	249	135	168	25.0626
:eeeee!!ddddtttttttttttdddd22eeee	chr7:45932720-45932952(+)$1	232	198	231	20.2672
ggg$$$$$cccvvvvvvvvvvvvvccc666666	chr5:133291223-133291537(-)$1	314	231	264	21.5831
c"""gggggggtttttttttttggggggg]ccc	chrX:132669701-132670005(-)$1	304	100	133	21.4725
===========vvvvvvvvvvvvv=========	chr20:17594297-17594512(-)$1	215	151	184	25.9576
[eeeee!!dddduuuuuuuuuuuuddddeeeee	chr16:56643143-56643390(+)$1	247	45	78	23.6787
=####ddddxxxxxxxxxxxxxxxdddd333==	chr2:20192567-20192908(-)$1	341	293	326	21.9603
=======[cccvvvvvvvvvvvvvccc]=====	chr2:97525465-97525707(-)$1	242	83	116	25.9807
===========xxxxxxxxxxxxxxx=======	chr6:160527293-160527551(+)$1	258	13	46	21.7560
!!dddd^^^^^^^^^^^^^^^^^^dddd4444f	chr1:43392067-43392316(-)$1	249	145	178	19.6047
GGGGGggggggguuuuuuuuuuuuggggggg::	chr1:31404286-31404548(-)$1	262	3	36	19.3177
ff"""eeeeewwwwwwwwwwwwwweeeee>>>>	chr4:88904091-88904345(+)$1	254	132	165	23.2484
ddddgggggggvvvvvvvvvvvvvggggggg::	chr17:42430253-42430531(+)$1	278	182	215	21.5864
ffff[ddddxxxxxxxxxxxxxxxdddd22fff	chr20:60710058-60710370(+)$1	312	47	80	19.8183
eeeee[ffffffuuuuuuuuuuuuffffff22e	chr1:150237740-150237993(-)$1	253	155	188	21.6710
fff[gggggggtttttttttttggggggg]fff	chr16:87863683-87863993(-)$1	310	15	48	20.4071
ggggiiiiiiiiitttttttttttiiiiiiiii	chr15:44063545-44063825(+)$1	280	49	82	22.0773
!!dddd[ccc[bbtttttttttttbb]cccddd	chr2:217363936-217364174(+)$1	238	164	197	20.4535
cc::ddddyyyyyyyyyyyyyyyydddd:cccm	chr17:66526556-66526803(+)$1	247	89	122	20.9347
==:ddddddddvvvvvvvvvvvvvdddd]dddd	chrX:51645263-51645524(+)$1	261	140	173	23.2285
ccc"""ddddwwwwwwwwwwwwwwdddd4444c	chr14:101201170-101201425(+)$1	255	94	127	25.5609
iiiiiii^^^^^^^^^^^^^^^^^^^^^iiiii	chr9:33112347-33112629(-)$1	282	32	65	19.0034
iiiiiiii^^^^^^^^^^^^^^^^^^iiiiiii	chr7:45932768-45933021(+)$1	253	86	119	19.6393
ggggggg[eeeeettttttttttteeeee>>>>	chr5:42800025-42800279(-)$1	254	59	92	21.1522
f[a[ddddcccuuuuuuuuuuuuccc]dddd]a	chrX:153664436-153664714(+)$1	278	50	83	23.3824
c"""gggggggtttttttttttggggggg]ccc	chrX:132669805-132670064(-)$1	259	159	192	21.4725
==========yyyyyyyyyyyyyyyy=======	chr13:113977480-113977714(+)$1	234	6	39	25.4166
cc!!dddd[ddddtttttttttttdddd]dddd	chr5:177022634-177022884(+)$1	250	52	85	22.0132
^^^^^^^^^^^^^^^^^^^^^^^^dddd22ccc	chr2:102508245-102508511(+)$1	266	226	259	18.3763
A::iiiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr12:106632168-106632459(-)$1	291	53	86	21.9039
============ttttttttttt==========	chr6:64291171-64291424(+)$1	253	52	85	23.6034
c[ffffff[bbuuuuuuuuuuuubb]ffffffc	chr6:142767043-142767431(+)$1	388	66	99	21.4830
fff####ddddvvvvvvvvvvvvvdddd4444f	chr7:148700607-148700857(-)$1	250	154	187	25.0371
FF::bb[dddduuuuuuuuuuuudddd]bbccc	chr2:10923910-10924136(-)$1	226	30	63	20.3219
$ggggggg[ddddtttttttttttdddd]gggg	chr2:216225932-216226181(-)$1	249	195	228	22.6403
hh:dddd[dddduuuuuuuuuuuudddd]dddd	chr10:120927197-120927446(-)$1	249	208	241	22.7391
eeeeeffffffvvvvvvvvvvvvvfffffffff	chr4:74321305-74321556(+)$1	251	161	194	21.7271
=====^^^^^^^^^^^^^^^^^^^=========	chr3:184052904-184053150(+)$1	246	16	49	19.9795
=======[cccvvvvvvvvvvvvvccc]=====	chr2:97525563-97525831(-)$1	268	207	240	25.9807
diiiiiiiiiwwwwwwwwwwwwwwiiiiiiiii	chr4:155506374-155506657(-)$1	283	160	193	24.8136
ccc"""ddddwwwwwwwwwwwwwwdddd4444c	chr14:101201256-101201478(+)$1	222	8	41	25.5609
ccc"""ddddwwwwwwwwwwwwwwdddd4444c	chr14:101201225-101201456(+)$1	231	39	72	25.5609
a!!ccc[cccxxxxxxxxxxxxxxxccc]ccca	chr2:97525796-97526027(-)$1	231	57	90	21.0014
!!bb[ffffffvvvvvvvvvvvvvffffff]bb	chr1:145441080-145441317(+)$1	237	105	138	22.0800
cc[eeeeeyyyyyyyyyyyyyyyyeeeee]ccc	chr12:49414160-49414436(-)$1	276	178	211	23.5854
==========[axxxxxxxxxxxxxxxa]====	chr6:64290887-64291138(+)$1	251	160	193	20.9996
!!dddd^^^^^^^^^^^^^^^^^^dddd4444f	chr1:43392127-43392373(-)$1	246	202	235	19.6047

#otherMatches

#Seq PSSM
UGGAGACGGAAUAAAUGUUUUCUCAUUCAGUCU	chr17:76168566-76168832(+)$1	266	206	239	25.2115
gaggagggagagaaggagggaggCGCUCCUGGG	chr7:139257475-139257745(-)$1	270	121	154	21.7255
GCAUUUUCCUUCAUUUCUUUAACAAGGAGAGCA	chr19:1257840-1258109(+)$1	269	69	102	23.1873
GACUGUAUUAGAUGAAAUGUGAGGAUCUUGUUC	chr14:69847080-69847336(-)$1	256	204	237	21.5803
CAGGAACUUUUGUUAGGAAAAAAUUGAAAGAAC	chr9:127998636-127998910(-)$1	274	81	114	22.6124
GUUUUUUUCUUUGCCUUGUAAUAAGAUUGUAAA	chr1:92146175-92146469(-)$1	294	49	82	21.7770
GCCGAUUCCAGUGCCUUAACUACUUACCGGAUC	chr6:7249213-7249479(+)$1	266	194	227	20.4191
gggcgcUGGGGAAGGGGGGAGGGACGGGCCGCC	chr14:32546301-32546554(+)$1	253	40	73	22.6853
UCUCCUCUGCUUCUUUGCCUCCCUCAGAUAGAA	chr17:37903203-37903503(+)$1	300	78	111	21.4625
CUUGUAUAUAGGAAAUGCUGCUGAACUGAAUAG	chr2:171574020-171574265(+)$1	245	202	235	23.7713
UUUCCAUUAAAGAAUAAAAUAUUUUGGACAAUG	chr2:10923936-10924157(-)$1	221	136	169	18.8052
UUUCCAUUAAAGAAUAAAAUAUUUUGGACAAUG	chr2:10923957-10924223(-)$1	266	202	235	18.8052
AUUUUGUAUAAAACUUUAAUUUCUUUUUUUUAA	chr19:42752313-42752542(-)$1	229	55	88	22.2240
GUGCAGGGGGAGCCUUCCAGCUCACUCUCCCUG	chr17:21218101-21218388(+)$1	287	251	284	21.8295
AGGCGCUGCUGGUGUUCUUAUUCUGGCGGCAGC	chr6:160527092-160527359(+)$1	267	214	247	21.7560
CUUGUAACGCUUGCAAUCCCAAUAAAGCAUUAA	chr11:2150274-2150523(-)$1	249	135	168	25.0626
UGUAUAUCAUGAAACACUUCUCAUCAUAUUGUA	chr7:45932720-45932952(+)$1	232	198	231	20.2672
AAAUACCCCUGAACCGUUUUAUUGCAGUAAUUU	chr5:133291223-133291537(-)$1	314	231	264	21.5831
UUGUGCCAAAUUAUUCUCCUAUGUUUGGCUGCU	chrX:132669701-132670005(-)$1	304	100	133	21.4725
GGGUGUUGAUGCCAUUAAAACCAACGUUGGUGC	chr20:17594297-17594512(-)$1	215	151	184	25.9576
UGCCCUGUGGGCUGUGCCAAGUGUGCCCAGGGC	chr16:56643143-56643390(+)$1	247	45	78	23.6787
GAAAUAGAAUGAAAAGUUUAGUGUUUCUUUAUC	chr2:20192567-20192908(-)$1	341	293	326	21.9603
GAGGGUGGGCCUGCUGUGGACAAUGGCAUACUC	chr2:97525465-97525707(-)$1	242	83	116	25.9807
AGGCGCUGCUGGUGUUCUUAUUCUGGCGGCAGC	chr6:160527293-160527551(+)$1	258	13	46	21.7560
CACUCAAAUUAAUCUUUCUUUACCUGAGACCAG	chr1:43392067-43392316(-)$1	249	145	178	19.6047
CACGGUGUACAUUUCCAGAGCCUUGUGUAUAUU	chr1:31404286-31404548(-)$1	262	3	36	19.3177
AAACUCCCUGUAAACUAAAAGCUUCAGGGUUAU	chr4:88904091-88904345(+)$1	254	132	165	23.2484
GCGCGUGUGCGUUUCAAUAAAGUUUGUACACUU	chr17:42430253-42430531(+)$1	278	182	215	21.5864
GUUGUACAUCGUUGUUUUGUGUUUGUGUUGUAA	chr20:60710058-60710370(+)$1	312	47	80	19.8183
GAUUGUGAUUUUGACUAAUAAAAAAGAAUUUGU	chr1:150237740-150237993(-)$1	253	155	188	21.6710
AAGCAAGUGCAUUUUCAGUCGUUGUGCUUUUUU	chr16:87863683-87863993(-)$1	310	15	48	20.4071
AAUACCAGGACCAGUUUAUGUUUGUGGUUUUGG	chr15:44063545-44063825(+)$1	280	49	82	22.0773
ACUUGCUCUUUCUGUGGCAAAGUAAGUAAGGCA	chr2:217363936-217364174(+)$1	238	164	197	20.4535
CAAACUGCUUUAUUUUCCCUACUUGCAGCGCCA	chr17:66526556-66526803(+)$1	247	89	122	20.9347
CUGUCAAGUUUUGGUAUCAGAAAUAAACAUUGA	chrX:51645263-51645524(+)$1	261	140	173	23.2285
GGAGUUCCGCAGAGCUUACUAUACGCGGUCUGU	chr14:101201170-101201425(+)$1	255	94	127	25.5609
CCUAUGUAUUUUUAUUGUGGUGUUUUAAAUAUG	chr9:33112347-33112629(-)$1	282	32	65	19.0034
GUAAGUUUAUUUUUUCUACACAGUAAAAACUUG	chr7:45932768-45933021(+)$1	253	86	119	19.6393
UUGUAUCAUACUCUUCUAAAACUUGAGUGGCUG	chr5:42800025-42800279(-)$1	254	59	92	21.1522
GCGUAAGGGACAUGAAUUCUAGGGUCUCCUUUC	chrX:153664436-153664714(+)$1	278	50	83	23.3824
UUGUGCCAAAUUAUUCUCCUAUGUUUGGCUGCU	chrX:132669805-132670064(-)$1	259	159	192	21.4725
GUCCUUGGGCGUCUCUAAUGUCUGCAGCUCAAG	chr13:113977480-113977714(+)$1	234	6	39	25.4166
AUCACAGUGUUACUGAUCAGGGAUGUGAGGCUG	chr5:177022634-177022884(+)$1	250	52	85	22.0132
aaaaaaggaaaaaaaaaaagaaaaagaaaaCGU	chr2:102508245-102508511(+)$1	266	226	259	18.3763
CUUUAAGGAAAAUUAAUUUUACUUUUUUUUUUG	chr12:106632168-106632459(-)$1	291	53	86	21.9039
AACCAUAUAUUUAUACUGUCUGGGGAUGUGUGG	chr6:64291171-64291424(+)$1	253	52	85	23.6034
GUACAUAUUUAUUUAUUUGUGUUUAUAUAUGUC	chr6:142767043-142767431(+)$1	388	66	99	21.4830
uaguuuaguccagauuuuuacagaggauacauc	chr7:148700607-148700857(-)$1	250	154	187	25.0371
GACUGCUGCUUGAAUGUUCUUGGAGGCUGUUUC	chr2:10923910-10924136(-)$1	226	30	63	20.3219
GAAAGCAUAUGCAGCCAACCAAGAUGCAAAUGU	chr2:216225932-216226181(-)$1	249	195	228	22.6403
UAAAACAUUUGCAUUUUACCACCAGUAACUGUU	chr10:120927197-120927446(-)$1	249	208	241	22.7391
UCACAGAAAUAAAAUAUCUCCAAAUGUUUCCUU	chr4:74321305-74321556(+)$1	251	161	194	21.7271
UAUUAUAUAUAAAGUCUUGAAAUUUGGUGUGUC	chr3:184052904-184053150(+)$1	246	16	49	19.9795
GAGGGUGGGCCUGCUGUGGACAAUGGCAUACUC	chr2:97525563-97525831(-)$1	268	207	240	25.9807
ucucuguauucccaaaugccuaacaguacagag	chr4:155506374-155506657(-)$1	283	160	193	24.8136
GGAGUUCCGCAGAGCUUACUAUACGCGGUCUGU	chr14:101201256-101201478(+)$1	222	8	41	25.5609
GGAGUUCCGCAGAGCUUACUAUACGCGGUCUGU	chr14:101201225-101201456(+)$1	231	39	72	25.5609
GCCUGGGUCCUCCUGGUGAGUCAUUGGAGCUAU	chr2:97525796-97526027(-)$1	231	57	90	21.0014
GAUCCCUGCAUCCUCAACAACAAUGUGCAGUGA	chr1:145441080-145441317(+)$1	237	105	138	22.0800
AGAGCAAAUGUAAAACUACUAAUUUUUGUGCUU	chr12:49414160-49414436(-)$1	276	178	211	23.5854
UUUUUUUUUUCCUUCCCAACCUCUCUUGCAAAA	chr6:64290887-64291138(+)$1	251	160	193	20.9996
CACUCAAAUUAAUCUUUCUUUACCUGAGACCAG	chr1:43392127-43392373(-)$1	246	202	235	19.6047

#DB
(((((((.((((............)))).))))	chr17:76168566-76168832(+)$1	1	206	239	25.2115
.....(((((.(...........).)))))...	chr7:139257475-139257745(-)$1	1	121	154	21.7255
((..(((((((............))))))))))	chr19:1257840-1258109(+)$1	1	69	102	23.1873
((....((.((((...........)))).))))	chr14:69847080-69847336(-)$1	1	204	237	21.5803
.(((..((((((............))))))..)	chr9:127998636-127998910(-)$1	1	81	114	22.6124
(.(((..((((...........))))....)))	chr1:92146175-92146469(-)$1	1	49	82	21.7770
)).(((.((.(((...........))).)))))	chr6:7249213-7249479(+)$1	1	194	227	20.4191
((.(.(((................)))))))))	chr14:32546301-32546554(+)$1	1	40	73	22.6853
(((..((((...............)))).))))	chr17:37903203-37903503(+)$1	1	78	111	21.4625
(((.(((.(((..............))).))).	chr2:171574020-171574265(+)$1	1	202	235	23.7713
(.((((..................)))).)).)	chr2:10923936-10924157(-)$1	1	136	169	18.8052
(.((((..................)))).)).)	chr2:10923957-10924223(-)$1	1	202	235	18.8052
(((((....((((...........))))....)	chr19:42752313-42752542(-)$1	1	55	88	22.2240
...(((((((((............)))))))))	chr17:21218101-21218388(+)$1	1	251	284	21.8295
(((((((((((...............)))))))	chr6:160527092-160527359(+)$1	1	214	247	21.7560
(((.(((.((((............)))).))).	chr11:2150274-2150523(-)$1	1	135	168	25.0626
.(((((..((((...........))))..))))	chr7:45932720-45932952(+)$1	1	198	231	20.2672
(((.....(((.............)))......	chr5:133291223-133291537(-)$1	1	231	264	21.5831
(...(((((((...........))))))).)))	chrX:132669701-132670005(-)$1	1	100	133	21.4725
(((((((((((.............)))))))))	chr20:17594297-17594512(-)$1	1	151	184	25.9576
.(((((..((((............)))))))))	chr16:56643143-56643390(+)$1	1	45	78	23.6787
(....((((...............))))...))	chr2:20192567-20192908(-)$1	1	293	326	21.9603
(((((((.(((.............))).)))))	chr2:97525465-97525707(-)$1	1	83	116	25.9807
(((((((((((...............)))))))	chr6:160527293-160527551(+)$1	1	13	46	21.7560
..((((..................))))....)	chr1:43392067-43392316(-)$1	1	145	178	19.6047
((((((((((((............)))))))..	chr1:31404286-31404548(-)$1	1	3	36	19.3177
((...(((((..............)))))....	chr4:88904091-88904345(+)$1	1	132	165	23.2484
))))(((((((.............)))))))..	chr17:42430253-42430531(+)$1	1	182	215	21.5864
((((.((((...............))))..)))	chr20:60710058-60710370(+)$1	1	47	80	19.8183
(((((.((((((............))))))..)	chr1:150237740-150237993(-)$1	1	155	188	21.6710
(((.(((((((...........))))))).)))	chr16:87863683-87863993(-)$1	1	15	48	20.4071
))))(((((((((...........)))))))))	chr15:44063545-44063825(+)$1	1	49	82	22.0773
..((((.(((.((...........)).))))))	chr2:217363936-217364174(+)$1	1	164	197	20.4535
))..((((................)))).(((.	chr17:66526556-66526803(+)$1	1	89	122	20.9347
)).((((((((.............)))).))))	chrX:51645263-51645524(+)$1	1	140	173	23.2285
(((...((((..............))))....)	chr14:101201170-101201425(+)$1	1	94	127	25.5609
(((((((.....................)))))	chr9:33112347-33112629(-)$1	1	32	65	19.0034
((((((((..................)))))))	chr7:45932768-45933021(+)$1	1	86	119	19.6393
(((((((.(((((...........)))))....	chr5:42800025-42800279(-)$1	1	59	92	21.1522
(.(.(((((((............))).)))).)	chrX:153664436-153664714(+)$1	1	50	83	23.3824
(...(((((((...........))))))).)))	chrX:132669805-132670064(-)$1	1	159	192	21.4725
((((((((((................)))))))	chr13:113977480-113977714(+)$1	1	6	39	25.4166
((..((((.((((...........)))).))))	chr5:177022634-177022884(+)$1	1	52	85	22.0132
........................))))..)))	chr2:102508245-102508511(+)$1	1	226	259	18.3763
(..(((((((((............)))))))))	chr12:106632168-106632459(-)$1	1	53	86	21.9039
((((((((((((...........))))))))))	chr6:64291171-64291424(+)$1	1	52	85	23.6034
(.((((((.((............)).)))))))	chr6:142767043-142767431(+)$1	1	66	99	21.4830
(((....((((.............))))....)	chr7:148700607-148700857(-)$1	1	154	187	25.0371
((..((.((((............)))).))(((	chr2:10923910-10924136(-)$1	1	30	63	20.3219
.(((((((.((((...........)))).))))	chr2:216225932-216226181(-)$1	1	195	228	22.6403
)).((((.((((............)))).))))	chr10:120927197-120927446(-)$1	1	208	241	22.7391
)))))((((((.............))))))(((	chr4:74321305-74321556(+)$1	1	161	194	21.7271
(((((...................)))))))))	chr3:184052904-184053150(+)$1	1	16	49	19.9795
(((((((.(((.............))).)))))	chr2:97525563-97525831(-)$1	1	207	240	25.9807
((((((((((..............)))))))))	chr4:155506374-155506657(-)$1	1	160	193	24.8136
(((...((((..............))))....)	chr14:101201256-101201478(+)$1	1	8	41	25.5609
(((...((((..............))))....)	chr14:101201225-101201456(+)$1	1	39	72	25.5609
(..(((.(((...............))).))))	chr2:97525796-97526027(-)$1	1	57	90	21.0014
..((.((((((.............)))))).))	chr1:145441080-145441317(+)$1	1	105	138	22.0800
((.(((((................))))).)))	chr12:49414160-49414436(-)$1	1	178	211	23.5854
((((((((((.(...............).))))	chr6:64290887-64291138(+)$1	1	160	193	20.9996
..((((..................))))....)	chr1:43392127-43392373(-)$1	1	202	235	19.6047

#PSSM
c : 0.17	= : 0.17	f : 0.11	g : 0.08	e : 0.06	! : 0.06	d : 0.04	$ : 0.03	[ : 0.03	h : 0.03	b : 0.03	: : 0.03	i : 0.03	G : 0.01	^ : 0.01	A : 0.01	F : 0.01	a : 0.01	
= : 0.16	c : 0.14	g : 0.09	e : 0.09	f : 0.08	[ : 0.08	! : 0.08	i : 0.04	h : 0.03	d : 0.03	: : 0.03	" : 0.03	$ : 0.01	# : 0.01	G : 0.01	^ : 0.01	F : 0.01	
= : 0.14	: : 0.11	d : 0.11	g : 0.09	c : 0.09	e : 0.08	f : 0.06	! : 0.04	" : 0.04	i : 0.04	# : 0.03	[ : 0.03	$ : 0.01	G : 0.01	a : 0.01	^ : 0.01	b : 0.01	
= : 0.14	d : 0.12	e : 0.09	" : 0.09	i : 0.08	g : 0.06	c : 0.06	[ : 0.06	! : 0.04	# : 0.04	$ : 0.03	f : 0.03	: : 0.03	a : 0.01	G : 0.01	^ : 0.01	b : 0.01	
d : 0.16	= : 0.14	g : 0.12	e : 0.09	i : 0.09	c : 0.08	" : 0.06	# : 0.04	[ : 0.04	$ : 0.03	! : 0.03	G : 0.01	^ : 0.01	f : 0.01	b : 0.01	
d : 0.20	g : 0.14	= : 0.12	i : 0.09	e : 0.08	c : 0.08	# : 0.04	" : 0.04	f : 0.04	! : 0.03	^ : 0.03	$ : 0.01	[ : 0.01	b : 0.01	
d : 0.17	g : 0.14	= : 0.12	^ : 0.09	i : 0.09	f : 0.08	[ : 0.06	e : 0.04	! : 0.04	c : 0.04	# : 0.03	b : 0.01	$ : 0.01	
d : 0.20	[ : 0.11	g : 0.11	^ : 0.11	= : 0.09	f : 0.08	i : 0.08	e : 0.04	c : 0.04	b : 0.03	! : 0.03	# : 0.01	$ : 0.01	
d : 0.24	^ : 0.12	c : 0.11	g : 0.09	= : 0.09	[ : 0.06	f : 0.06	i : 0.06	e : 0.04	y : 0.04	b : 0.01	# : 0.01	
d : 0.25	^ : 0.12	c : 0.11	g : 0.09	= : 0.09	f : 0.06	i : 0.06	e : 0.04	y : 0.04	x : 0.04	[ : 0.01	b : 0.01	
d : 0.20	^ : 0.12	g : 0.09	c : 0.09	w : 0.08	f : 0.06	y : 0.06	x : 0.06	= : 0.06	[ : 0.04	i : 0.04	e : 0.01	b : 0.01	
d : 0.14	v : 0.14	^ : 0.12	x : 0.09	w : 0.09	u : 0.06	t : 0.06	y : 0.06	i : 0.04	a : 0.03	f : 0.03	c : 0.01	g : 0.01	b : 0.01	e : 0.01	= : 0.01	
u : 0.20	v : 0.14	^ : 0.12	t : 0.11	x : 0.11	w : 0.09	d : 0.06	y : 0.06	c : 0.01	i : 0.01	b : 0.01	e : 0.01	
t : 0.24	u : 0.20	v : 0.14	^ : 0.12	x : 0.11	w : 0.09	y : 0.06	
t : 0.24	u : 0.20	v : 0.14	^ : 0.12	x : 0.11	w : 0.09	y : 0.06	
t : 0.24	u : 0.20	v : 0.14	^ : 0.12	x : 0.11	w : 0.09	y : 0.06	
t : 0.24	u : 0.20	v : 0.14	^ : 0.12	x : 0.11	w : 0.09	y : 0.06	
t : 0.24	u : 0.20	v : 0.14	^ : 0.12	x : 0.11	w : 0.09	y : 0.06	
t : 0.24	u : 0.20	v : 0.14	^ : 0.12	x : 0.11	w : 0.09	y : 0.06	
t : 0.24	u : 0.20	v : 0.14	^ : 0.12	x : 0.11	w : 0.09	y : 0.06	
t : 0.24	u : 0.20	v : 0.14	^ : 0.12	x : 0.11	w : 0.09	y : 0.06	
t : 0.24	u : 0.20	v : 0.14	^ : 0.12	x : 0.11	w : 0.09	y : 0.06	
u : 0.20	t : 0.17	v : 0.14	^ : 0.12	x : 0.11	w : 0.09	y : 0.06	g : 0.04	d : 0.01	
u : 0.14	v : 0.14	t : 0.12	^ : 0.12	x : 0.11	w : 0.09	g : 0.06	y : 0.06	d : 0.04	a : 0.01	c : 0.01	= : 0.01	b : 0.01	
d : 0.40	g : 0.09	c : 0.09	f : 0.06	i : 0.06	x : 0.06	= : 0.04	e : 0.04	b : 0.03	^ : 0.03	] : 0.01	w : 0.01	y : 0.01	
d : 0.40	c : 0.12	g : 0.09	e : 0.06	f : 0.06	i : 0.06	x : 0.04	= : 0.04	^ : 0.03	b : 0.01	y : 0.01	] : 0.01	
d : 0.38	c : 0.11	g : 0.09	= : 0.09	f : 0.08	i : 0.08	e : 0.06	] : 0.03	4 : 0.01	^ : 0.01	x : 0.01	
d : 0.37	g : 0.09	= : 0.09	f : 0.08	i : 0.08	e : 0.06	] : 0.06	c : 0.04	a : 0.03	4 : 0.01	2 : 0.01	6 : 0.01	^ : 0.01	
] : 0.20	4 : 0.12	= : 0.12	g : 0.09	i : 0.09	e : 0.08	f : 0.08	2 : 0.04	b : 0.03	h : 0.01	6 : 0.01	3 : 0.01	c : 0.01	: : 0.01	d : 0.01	
= : 0.14	4 : 0.12	g : 0.09	i : 0.09	b : 0.08	f : 0.08	c : 0.08	] : 0.06	d : 0.06	e : 0.04	> : 0.03	2 : 0.03	h : 0.01	6 : 0.01	3 : 0.01	
c : 0.17	= : 0.14	4 : 0.12	i : 0.09	g : 0.08	d : 0.08	f : 0.06	e : 0.04	b : 0.04	2 : 0.03	> : 0.03	h : 0.01	6 : 0.01	3 : 0.01	] : 0.01	
c : 0.17	= : 0.16	4 : 0.12	i : 0.09	f : 0.08	d : 0.06	g : 0.04	e : 0.04	] : 0.04	2 : 0.03	: : 0.03	> : 0.03	h : 0.01	6 : 0.01	b : 0.01	
c : 0.22	= : 0.16	f : 0.11	i : 0.09	e : 0.08	d : 0.06	g : 0.04	: : 0.03	> : 0.03	a : 0.03	4 : 0.01	h : 0.01	2 : 0.01	] : 0.01	6 : 0.01	m : 0.01	b : 0.01	

#score	1372.5606289003179
#seq	62
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_CDS_m1_run2.txt

#BEAR
gggggdddduuuuuuuuuuuudddd77777	chr16:46729817-46730099(+)$1	282	70	100	21.2239
bb!!fffffftttttttttttffffff333	chr3:47770405-47770701(-)$1	296	69	99	22.2810
ccc[ddddyyyyyyyyyyyyyyyyddddcc	chr1:219383762-219384028(+)$1	266	51	81	23.3880
eeeeeyyyyyyyyyyyyyyyyeeeeedddd	chr16:24567493-24567770(+)$1	277	133	163	22.4174
ccc[bbyyyyyyyyyyyyyyyybb]ccc::	chr13:107209319-107209593(-)$1	274	153	183	21.3051
eeeeeyyyyyyyyyyyyyyyyeeeee333b	chr12:62959990-62960258(+)$1	268	165	195	22.8059
#hhhhhhhhuuuuuuuuuuuuhhhhhhhhd	chr15:44890871-44891151(-)$1	280	92	122	22.9483
"gggggggvvvvvvvvvvvvvgggggggbb	chr8:62593451-62593730(-)$1	279	127	157	23.9566
eeeeecccvvvvvvvvvvvvvccc]eeeee	chr1:186289439-186289657(-)$1	218	140	170	23.6149
hhhhhhhhyyyyyyyyyyyyyyyyhhhhhh	chr6:83896632-83896906(-)$1	274	202	232	22.9007
f!!a[ddddvvvvvvvvvvvvvdddda333	chr1:155885510-155885749(-)$1	239	19	49	23.4596
gggggg^^^^^^^^^^^^^^^^^^^ggggg	chr14:50300057-50300356(-)$1	299	122	152	17.2979
[ccc[ddddtttttttttttdddd]ccc]d	chr6:109699042-109699296(-)$1	254	196	226	23.0272
ccc[fffffftttttttttttffffff]cc	chr6:43014220-43014482(-)$1	262	183	213	22.7402
ccc!!ddddwwwwwwwwwwwwwwdddd333	chr20:476313-476542(-)$1	229	23	53	22.9535
bb[ffffffuuuuuuuuuuuuffffffbb2	chr18:33605492-33605788(-)$1	296	242	272	22.7499
=========uuuuuuuuuuuu=========	chr6:32943917-32944158(+)$1	241	70	100	25.8785
cc[cccxxxxxxxxxxxxxxxccc]ccc]e	chr11:47861998-47862252(-)$1	254	176	206	19.7740
gggggggyyyyyyyyyyyyyyyyggggggg	chr17:7852588-7852850(+)$1	262	66	96	24.8269
"eeeeecccuuuuuuuuuuuuccc]eeeee	chr1:151403127-151403436(-)$1	309	59	89	24.8605
!hhhhhhhhvvvvvvvvvvvvvhhhhhhhh	chr9:134072491-134072746(+)$1	255	190	220	22.3714
fff!!ddddvvvvvvvvvvvvvdddd22ff	chr5:74801828-74802073(-)$1	245	63	93	22.6812
hhgggggggvvvvvvvvvvvvvggggggg2	chr3:195791169-195791407(-)$1	238	123	153	24.1473
gggggddddvvvvvvvvvvvvvdddd22gg	chr9:95025185-95025435(-)$1	250	51	81	23.4582
$ccc!!cccvvvvvvvvvvvvvccc22ccc	chr1:100174569-100174786(-)$1	217	87	117	23.6886
eeeeeyyyyyyyyyyyyyyyyeeeeeffff	chr1:154227204-154227466(+)$1	262	83	113	22.5491
dd[ffffffuuuuuuuuuuuuffffff]dd	chr1:113656934-113657225(+)$1	291	205	235	23.5453
iiiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr17:65353533-65353804(-)$1	271	1	31	25.9177
ccbb[eeeeettttttttttteeeeebb]c	chr9:115456370-115456647(-)$1	277	207	237	22.2567
bb!!cccwwwwwwwwwwwwwwccc22bb]e	chr13:37578521-37578803(+)$1	282	7	37	22.0935
!!ccceeeeettttttttttteeeee]ccc	chr6:131924191-131924456(-)$1	265	223	253	23.3183
ceeeee[bbuuuuuuuuuuuubb]eeeee]	chr2:24086258-24086535(-)$1	277	84	114	23.8299
========yyyyyyyyyyyyyyyy======	chr9:19336164-19336423(+)$1	259	10	40	24.8362
!dddd[cccuuuuuuuuuuuuccc]dddd]	chr17:59984834-59985124(-)$1	290	104	134	24.4310
fff[fffffftttttttttttffffff]ff	chr6:32942127-32942393(+)$1	266	48	78	22.0785
fff[eeeeettttttttttteeeee]ffff	chr6:131921148-131921399(-)$1	251	51	81	22.4544
hhhhh[cccuuuuuuuuuuuuccc]hhhhh	chrX:65478568-65478845(+)$1	277	5	35	24.7475
eeeffffffwwwwwwwwwwwwwwffffff2	chr2:24087637-24087912(-)$1	275	235	265	21.7755
hhhhhhhhyyyyyyyyyyyyyyyyhhhhhh	chr16:66757560-66757831(-)$1	271	24	54	22.9007
iiiiiiiwwwwwwwwwwwwwwiiiiiiiii	chr2:62112078-62112326(-)$1	248	74	104	24.1828
iiiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr7:135098229-135098477(-)$1	248	158	188	25.9177
ggggeeeeewwwwwwwwwwwwwweeeee::	chr7:151855982-151856277(-)$1	295	52	82	21.2237
ddd!!ddddvvvvvvvvvvvvvdddd22dd	chr6:44217299-44217512(+)$1	213	64	94	22.6908
[gggggggvvvvvvvvvvvvvggggggggg	chr14:35871106-35871377(-)$1	271	214	244	24.5717
hhhhhh!!auuuuuuuuuuuua22hhhhhh	chr21:33064595-33064865(-)$1	270	121	151	23.9075
!!bb!!cccuuuuuuuuuuuuccc22bb]b	chr4:139104356-139104573(-)$1	217	162	192	23.8332
##ffffffyyyyyyyyyyyyyyyyffffff	chr11:17156435-17156686(-)$1	251	73	103	22.7895
ccc[a[cccuuuuuuuuuuuuccc]acccc	chr1:213173567-213173837(-)$1	270	109	139	25.3975
iiiiiiiiyyyyyyyyyyyyyyyyiiiiii	chr10:70506810-70507058(+)$1	248	17	47	24.9779
[bb[fffffftttttttttttffffff]bb	chr9:131028012-131028296(-)$1	284	225	255	21.8353
!!gggggggvvvvvvvvvvvvvggggggg4	chr17:34160797-34161046(+)$1	249	151	181	24.5817
fddddyyyyyyyyyyyyyyyydddd:eeee	chr6:135516786-135517046(+)$1	260	195	225	20.9027
dddeeeeeuuuuuuuuuuuueeeee]dddd	chr1:29486870-29487144(-)$1	274	1	31	22.2414
dd!!eeeeettttttttttteeeee22ddd	chr1:29391367-29391656(+)$1	289	21	51	22.2629
ddddeeeeevvvvvvvvvvvvveeeeeccc	chr7:127026056-127026348(-)$1	292	163	193	23.1459
eeee[dddduuuuuuuuuuuudddd]eeee	chr3:112727142-112727397(-)$1	255	127	157	23.9228
==========ttttttttttt=========	chr6:111213819-111214065(+)$1	246	213	243	24.3173
deeeee[bbvvvvvvvvvvvvvbb]eeeee	chr17:7847683-7847945(+)$1	262	80	110	22.7544
======xxxxxxxxxxxxxxx=========	chr1:55572941-55573213(-)$1	272	67	97	20.4312
hhhhhhhhvvvvvvvvvvvvvhhhhhhhhi	chr15:76576026-76576276(-)$1	250	97	127	22.2684
"""ccc[bbuuuuuuuuuuuubb]ccc]dd	chr11:62430659-62430918(-)$1	259	142	172	23.7861

#otherMatches

#Seq PSSM
GAGAACAGGAGAAAAAUUAACCUUGAUAAC	chr16:46729817-46730099(+)$1	282	70	100	21.2239
CAUUGCCAUGUGCUUUAUUUUUGUGGUUUU	chr3:47770405-47770701(-)$1	296	69	99	22.2810
AUAUCAUAUCCUAAAUUAUUAUUUUAUGUA	chr1:219383762-219384028(+)$1	266	51	81	23.3880
AGGAUAAAAACUUUGAAUCUGGUCCUAGGA	chr16:24567493-24567770(+)$1	277	133	163	22.4174
CUGGAAGAGAAUAACCGAAAAAUUGCAGAA	chr13:107209319-107209593(-)$1	274	153	183	21.3051
GUUGUGGAUUUAUACCAAAAAACAGCGUGU	chr12:62959990-62960258(+)$1	268	165	195	22.8059
UGAUUUUGAUUCCUUUCUUUUUCAGGAUCC	chr15:44890871-44891151(-)$1	280	92	122	22.9483
UAUUAUAGGAAAACUAGGAAUCUAUGAUGC	chr8:62593451-62593730(-)$1	279	127	157	23.9566
GUUUGGGCCACCUGAAGAUAUGCCACAAAC	chr1:186289439-186289657(-)$1	218	140	170	23.6149
aaauuaaacuaauauuuaaaaaacuuuaau	chr6:83896632-83896906(-)$1	274	202	232	22.9007
CCAGUGACUGGAAUAAAAACAGAGUCCGAU	chr1:155885510-155885749(-)$1	239	19	49	23.4596
UUUUUUUCCCCCACCAUUAGAUAUUGAAAA	chr14:50300057-50300356(-)$1	299	122	152	17.2979
AAGUAUUCAUAUUGGCUGCUUGGAAGCUGA	chr6:109699042-109699296(-)$1	254	196	226	23.0272
AACCCAUCAACAUCCCUUUCUUUGAUGUGU	chr6:43014220-43014482(-)$1	262	183	213	22.7402
UACAUGGAGGGAAAAGUAAAGGACUCUUAC	chr20:476313-476542(-)$1	229	23	53	22.9535
CAUGUUUUUGAAAAUUGAAGAGAAGACUGU	chr18:33605492-33605788(-)$1	296	242	272	22.7499
GGGAAGAGAAUCAAACUACACUUUUUUCCU	chr6:32943917-32944158(+)$1	241	70	100	25.8785
GCCAUUCGCCUAAAAUUCCAAAAUUGCAGU	chr11:47861998-47862252(-)$1	254	176	206	19.7740
GAGAGGAUCUGACGCUGAUUUCUUCCUCUC	chr17:7852588-7852850(+)$1	262	66	96	24.8269
aaauGUGGGUUUAACAUUGUUUCUAACAUU	chr1:151403127-151403436(-)$1	309	59	89	24.8605
CAUUCCUGAAAGCUCACCUCCCUCAGGAAU	chr9:134072491-134072746(+)$1	255	190	220	22.3714
AAGUUUGGAUUUCUAAAAUACUUCUAUUUU	chr5:74801828-74802073(-)$1	245	63	93	22.6812
UUGGGGCCCAGAGAGAUGCAUGGGGCCCUG	chr3:195791169-195791407(-)$1	238	123	153	24.1473
UGGACUUCAUUUCUAUUUUUAUUGAACUGU	chr9:95025185-95025435(-)$1	250	51	81	23.4582
UCAUAUCUCAAUUUUUCUUUCAGGGUCAUG	chr1:100174569-100174786(-)$1	217	87	117	23.6886
UUCUGUUUUUUUUUUUUUUACCAGAAUGGC	chr1:154227204-154227466(+)$1	262	83	113	22.5491
CCCUCGUCUCAACUGGACUAAAGAUGAUGG	chr1:113656934-113657225(+)$1	291	205	235	23.5453
UAGAAGAGGCUGUUGAUUUUUCCUUUUCUG	chr17:65353533-65353804(-)$1	271	1	31	25.9177
CCAGUCUUCAACAAAUCAUCCUGGAGCUAG	chr9:115456370-115456647(-)$1	277	207	237	22.2567
GUAGAGGCCCUGACACAAUUCCCUAAGCUG	chr13:37578521-37578803(+)$1	282	7	37	22.0935
UCCUGAGUCAUCUUCAUACUUUGGCUGCAG	chr6:131924191-131924456(-)$1	265	223	253	23.3183
ACUUCUUGAUUUUUUUAUUCUUCUAGGGGC	chr2:24086258-24086535(-)$1	277	84	114	23.8299
auauauauaaacauacacacacacauauau	chr9:19336164-19336423(+)$1	259	10	40	24.8362
CUUUUGUGAUCCAUAUUUCUUUCAGAGAAA	chr17:59984834-59985124(-)$1	290	104	134	24.4310
UGUGCAGAUGCACUUUUUCCUCAUUUGGAC	chr6:32942127-32942393(+)$1	266	48	78	22.0785
GAUAUAAUCAUUUAUAUCUGGAUUACAUCU	chr6:131921148-131921399(-)$1	251	51	81	22.4544
aucuucgguaaaaaagauuaggccuaggau	chrX:65478568-65478845(+)$1	277	5	35	24.7475
UAAGCAAUGUCAUAGAUGUUUAUUAUUGUU	chr2:24087637-24087912(-)$1	275	235	265	21.7755
AUAAUUUUAAAUGCUCCUUUAAAAAAAAUU	chr16:66757560-66757831(-)$1	271	24	54	22.9007
aaaaaaGUUCUAAUUUGUUUUCUUUUUUUU	chr2:62112078-62112326(-)$1	248	74	104	24.1828
AUAUGCAGUGUCCAAAACCUGACUGCAUGU	chr7:135098229-135098477(-)$1	248	158	188	25.9177
CACUGCAUGAACUAAAAACCAAAUAUGCAA	chr7:151855982-151856277(-)$1	295	52	82	21.2237
GUUUUUUGCUUCUUUAAAACUUGUGAUUGA	chr6:44217299-44217512(+)$1	213	64	94	22.6908
AUUUUUCUAAAAAAAGAAAAAAGAAGAAAA	chr14:35871106-35871377(-)$1	271	214	244	24.5717
GGGUGGGGCAGCUGGACAAAAGAACUACUC	chr21:33064595-33064865(-)$1	270	121	151	23.9075
UUUGUUGCCCUCUCCUGCUUUGGCUCCAUG	chr4:139104356-139104573(-)$1	217	162	192	23.8332
UCAGAGAAUCUAUUAACUUUUUUUUUCUUU	chr11:17156435-17156686(-)$1	251	73	103	22.7895
CAGACAGUGAUCUGACACAAACACAGCUGA	chr1:213173567-213173837(-)$1	270	109	139	25.3975
UUUAAAGUACUAACUAUGUAAAUCAUUUUG	chr10:70506810-70507058(+)$1	248	17	47	24.9779
AGAAGGUGGGAAUCUGGGCACCCCAUCAUC	chr9:131028012-131028296(-)$1	284	225	255	21.8353
AGUGCUGAGUAUCCCAAAAUGUUUCAGUGG	chr17:34160797-34161046(+)$1	249	151	181	24.5817
GGAGAACACCACUCCACUCCAUCUCUGCCA	chr6:135516786-135517046(+)$1	260	195	225	20.9027
UUUGCAAAAUCCACCUAACCUUUGCUAAGC	chr1:29486870-29487144(-)$1	274	1	31	22.2414
AUGUGGUAUGUUUUCUACCAGUGCCCAGUC	chr1:29391367-29391656(+)$1	289	21	51	22.2629
CUCCUUUGUUACAGCAACCACUACAGACAU	chr7:127026056-127026348(-)$1	292	163	193	23.1459
GUUUUGAUUUUAAAUGUUCUCAAUCCAGAC	chr3:112727142-112727397(-)$1	255	127	157	23.9228
GAGUAGUUAUAUAUUGCUUCAAUAAUUAUU	chr6:111213819-111214065(+)$1	246	213	243	24.3173
CCUGAGUCACUUCUUCUCUCUUUGCUUCAG	chr17:7847683-7847945(+)$1	262	80	110	22.7544
AAAUCCUUCUUUCUUUGUAAUGGAUUUUUU	chr1:55572941-55573213(-)$1	272	67	97	20.4312
CUUUUUAAAUGAGGUCGAGGCUUGAAGAGU	chr15:76576026-76576276(-)$1	250	97	127	22.2684
CAGGGAAGAAGCGCAGAAAACUCCUCCAGC	chr11:62430659-62430918(-)$1	259	142	172	23.7861

#DB
(((((((((............)))).....	chr16:46729817-46730099(+)$1	1	70	100	21.2239
((..((((((...........))))))...	chr3:47770405-47770701(-)$1	1	69	99	22.2810
(((.((((................))))))	chr1:219383762-219384028(+)$1	1	51	81	23.3880
(((((................)))))))))	chr16:24567493-24567770(+)$1	1	133	163	22.4174
(((.((................)).)))..	chr13:107209319-107209593(-)$1	1	153	183	21.3051
(((((................)))))...)	chr12:62959990-62960258(+)$1	1	165	195	22.8059
.((((((((............)))))))))	chr15:44890871-44891151(-)$1	1	92	122	22.9483
.(((((((.............)))))))))	chr8:62593451-62593730(-)$1	1	127	157	23.9566
((((((((.............))).)))))	chr1:186289439-186289657(-)$1	1	140	170	23.6149
((((((((................))))))	chr6:83896632-83896906(-)$1	1	202	232	22.9007
(..(.((((.............)))))...	chr1:155885510-155885749(-)$1	1	19	49	23.4596
((((((...................)))))	chr14:50300057-50300356(-)$1	1	122	152	17.2979
.(((.((((...........)))).))).)	chr6:109699042-109699296(-)$1	1	196	226	23.0272
(((.((((((...........)))))).))	chr6:43014220-43014482(-)$1	1	183	213	22.7402
(((..((((..............))))...	chr20:476313-476542(-)$1	1	23	53	22.9535
((.((((((............)))))))).	chr18:33605492-33605788(-)$1	1	242	272	22.7499
(((((((((............)))))))))	chr6:32943917-32944158(+)$1	1	70	100	25.8785
((.(((...............))).))).)	chr11:47861998-47862252(-)$1	1	176	206	19.7740
(((((((................)))))))	chr17:7852588-7852850(+)$1	1	66	96	24.8269
.((((((((............))).)))))	chr1:151403127-151403436(-)$1	1	59	89	24.8605
.((((((((.............))))))))	chr9:134072491-134072746(+)$1	1	190	220	22.3714
(((..((((.............))))..))	chr5:74801828-74802073(-)$1	1	63	93	22.6812
(((((((((.............))))))).	chr3:195791169-195791407(-)$1	1	123	153	24.1473
(((((((((.............))))..))	chr9:95025185-95025435(-)$1	1	51	81	23.4582
.(((..(((.............)))..)))	chr1:100174569-100174786(-)$1	1	87	117	23.6886
(((((................)))))((((	chr1:154227204-154227466(+)$1	1	83	113	22.5491
((.((((((............)))))).))	chr1:113656934-113657225(+)$1	1	205	235	23.5453
(((((((((............)))))))))	chr17:65353533-65353804(-)$1	1	1	31	25.9177
((((.(((((...........))))))).)	chr9:115456370-115456647(-)$1	1	207	237	22.2567
((..(((..............)))..)).)	chr13:37578521-37578803(+)$1	1	7	37	22.0935
..((((((((...........))))).)))	chr6:131924191-131924456(-)$1	1	223	253	23.3183
((((((.((............)).))))).	chr2:24086258-24086535(-)$1	1	84	114	23.8299
((((((((................))))))	chr9:19336164-19336423(+)$1	1	10	40	24.8362
.((((.(((............))).)))).	chr17:59984834-59985124(-)$1	1	104	134	24.4310
(((.((((((...........)))))).))	chr6:32942127-32942393(+)$1	1	48	78	22.0785
(((.(((((...........))))).))))	chr6:131921148-131921399(-)$1	1	51	81	22.4544
(((((.(((............))).)))))	chrX:65478568-65478845(+)$1	1	5	35	24.7475
(((((((((..............)))))).	chr2:24087637-24087912(-)$1	1	235	265	21.7755
((((((((................))))))	chr16:66757560-66757831(-)$1	1	24	54	22.9007
(((((((..............)))))))))	chr2:62112078-62112326(-)$1	1	74	104	24.1828
(((((((((............)))))))))	chr7:135098229-135098477(-)$1	1	158	188	25.9177
))))(((((..............)))))..	chr7:151855982-151856277(-)$1	1	52	82	21.2237
(((..((((.............))))..))	chr6:44217299-44217512(+)$1	1	64	94	22.6908
.(((((((.............)))))))))	chr14:35871106-35871377(-)$1	1	214	244	24.5717
((((((..(............)..))))))	chr21:33064595-33064865(-)$1	1	121	151	23.9075
..((..(((............)))..)).)	chr4:139104356-139104573(-)$1	1	162	192	23.8332
..((((((................))))))	chr11:17156435-17156686(-)$1	1	73	103	22.7895
(((.(.(((............))).)))))	chr1:213173567-213173837(-)$1	1	109	139	25.3975
((((((((................))))))	chr10:70506810-70507058(+)$1	1	17	47	24.9779
.((.((((((...........)))))).))	chr9:131028012-131028296(-)$1	1	225	255	21.8353
..(((((((.............))))))).	chr17:34160797-34161046(+)$1	1	151	181	24.5817
)((((................)))).((((	chr6:135516786-135517046(+)$1	1	195	225	20.9027
((((((((............))))).))))	chr1:29486870-29487144(-)$1	1	1	31	22.2414
((..(((((...........)))))..)))	chr1:29391367-29391656(+)$1	1	21	51	22.2629
))))(((((.............)))))(((	chr7:127026056-127026348(-)$1	1	163	193	23.1459
((((.((((............)))).))))	chr3:112727142-112727397(-)$1	1	127	157	23.9228
((((((((((...........)))))))))	chr6:111213819-111214065(+)$1	1	213	243	24.3173
((((((.((.............)).)))))	chr17:7847683-7847945(+)$1	1	80	110	22.7544
((((((...............)))))))))	chr1:55572941-55573213(-)$1	1	67	97	20.4312
((((((((.............)))))))))	chr15:76576026-76576276(-)$1	1	97	127	22.2684
...(((.((............)).))).))	chr11:62430659-62430918(-)$1	1	142	172	23.7861

#PSSM
c : 0.13	e : 0.09	h : 0.09	d : 0.09	g : 0.08	f : 0.08	! : 0.08	= : 0.06	i : 0.06	b : 0.04	" : 0.04	[ : 0.04	# : 0.03	$ : 0.01	
c : 0.14	e : 0.14	h : 0.13	g : 0.11	d : 0.11	b : 0.06	! : 0.06	= : 0.06	i : 0.06	f : 0.04	# : 0.01	" : 0.01	
g : 0.14	e : 0.14	c : 0.13	h : 0.11	d : 0.08	! : 0.06	= : 0.06	f : 0.06	i : 0.06	[ : 0.04	b : 0.04	" : 0.01	
g : 0.14	e : 0.14	[ : 0.11	h : 0.11	! : 0.09	c : 0.08	f : 0.06	= : 0.06	i : 0.06	d : 0.04	b : 0.03	a : 0.01	
e : 0.19	g : 0.13	f : 0.13	h : 0.11	! : 0.08	[ : 0.06	= : 0.06	c : 0.06	i : 0.06	d : 0.04	b : 0.01	a : 0.01	
e : 0.16	d : 0.14	f : 0.13	h : 0.09	g : 0.09	y : 0.06	c : 0.06	= : 0.06	i : 0.06	[ : 0.04	! : 0.03	b : 0.01	
d : 0.14	f : 0.13	c : 0.13	e : 0.11	y : 0.08	h : 0.08	g : 0.08	i : 0.06	= : 0.04	[ : 0.04	x : 0.03	^ : 0.01	! : 0.01	
d : 0.14	f : 0.13	c : 0.11	e : 0.11	y : 0.09	h : 0.08	g : 0.06	= : 0.04	i : 0.04	b : 0.04	x : 0.03	w : 0.03	^ : 0.01	! : 0.01	
y : 0.19	d : 0.13	f : 0.11	c : 0.09	e : 0.09	v : 0.06	b : 0.04	h : 0.03	= : 0.03	x : 0.03	g : 0.03	i : 0.03	w : 0.03	^ : 0.01	a : 0.01	u : 0.01	
u : 0.27	v : 0.22	y : 0.19	w : 0.08	f : 0.06	t : 0.04	x : 0.03	e : 0.03	^ : 0.01	= : 0.01	
u : 0.27	v : 0.22	y : 0.19	t : 0.16	w : 0.08	x : 0.03	^ : 0.01	
u : 0.27	v : 0.22	y : 0.19	t : 0.16	w : 0.08	x : 0.03	^ : 0.01	
u : 0.27	v : 0.22	y : 0.19	t : 0.16	w : 0.08	x : 0.03	^ : 0.01	
u : 0.27	v : 0.22	y : 0.19	t : 0.16	w : 0.08	x : 0.03	^ : 0.01	
u : 0.27	v : 0.22	y : 0.19	t : 0.16	w : 0.08	x : 0.03	^ : 0.01	
u : 0.27	v : 0.22	y : 0.19	t : 0.16	w : 0.08	x : 0.03	^ : 0.01	
u : 0.27	v : 0.22	y : 0.19	t : 0.16	w : 0.08	x : 0.03	^ : 0.01	
u : 0.27	v : 0.22	y : 0.19	t : 0.16	w : 0.08	x : 0.03	^ : 0.01	
u : 0.27	v : 0.22	y : 0.19	t : 0.16	w : 0.08	x : 0.03	^ : 0.01	
u : 0.27	v : 0.22	y : 0.19	t : 0.16	w : 0.08	x : 0.03	^ : 0.01	
u : 0.26	v : 0.22	y : 0.19	t : 0.11	w : 0.08	e : 0.04	x : 0.03	^ : 0.01	d : 0.01	
v : 0.16	y : 0.13	e : 0.13	c : 0.13	f : 0.09	d : 0.06	w : 0.04	= : 0.04	i : 0.04	h : 0.03	g : 0.03	b : 0.03	^ : 0.01	a : 0.01	
e : 0.14	c : 0.14	d : 0.13	y : 0.11	f : 0.09	b : 0.06	g : 0.06	h : 0.04	w : 0.04	= : 0.04	i : 0.04	^ : 0.01	2 : 0.01	
e : 0.16	d : 0.14	c : 0.14	f : 0.11	y : 0.09	g : 0.08	h : 0.04	= : 0.04	i : 0.04	b : 0.03	] : 0.03	^ : 0.01	2 : 0.01	
e : 0.18	d : 0.14	] : 0.14	f : 0.13	h : 0.09	g : 0.08	= : 0.06	i : 0.06	c : 0.03	2 : 0.03	^ : 0.01	
e : 0.18	f : 0.13	d : 0.11	h : 0.11	g : 0.09	c : 0.06	= : 0.06	2 : 0.06	i : 0.06	] : 0.04	7 : 0.01	a : 0.01	: : 0.01	
f : 0.16	e : 0.13	h : 0.11	g : 0.09	d : 0.08	c : 0.08	2 : 0.08	= : 0.06	i : 0.06	b : 0.04	7 : 0.01	3 : 0.01	a : 0.01	] : 0.01	
c : 0.11	h : 0.11	e : 0.11	g : 0.09	d : 0.08	] : 0.08	3 : 0.06	b : 0.06	= : 0.06	f : 0.06	i : 0.06	2 : 0.04	7 : 0.01	
d : 0.11	h : 0.11	c : 0.09	e : 0.09	g : 0.09	f : 0.09	] : 0.08	3 : 0.06	= : 0.06	i : 0.06	b : 0.04	: : 0.03	7 : 0.01	
d : 0.13	c : 0.11	e : 0.11	h : 0.08	f : 0.08	i : 0.08	b : 0.06	g : 0.06	= : 0.06	3 : 0.04	2 : 0.04	: : 0.03	] : 0.03	7 : 0.01	4 : 0.01	

#score	1409.436731874551
#seq	61
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_transcript_m3_run2.txt

#BEAR
hhhh!!cccooooooccc22hh	chr3:195776085-195776391(-)$1	306	57	79	12.0868
==========mmmm========	chr4:174252819-174253078(-)$1	259	70	92	10.9792
:hhhhhhhhoooooohhhhhhh	chr11:95503702-95503968(-)$1	266	7	29	11.4884
ffgggggggooooooggggggg	chr15:25247379-25247625(+)$1	246	133	155	13.1308
eeeee!!bboooooobb]eeee	chr18:56998159-56998430(-)$1	271	120	142	10.0948
!!gggggggooooooggggggg	chr16:23585415-23585701(+)$1	286	101	123	13.5567
iiiiiiiiimmmmiiiiiiiii	chr5:96368335-96368576(+)$1	241	179	201	11.1270
iiiiiiiiiooooooiiiiiii	chr7:4810877-4811139(+)$1	262	152	174	14.9680
hhhhhh[bboooooobbhhhhh	chr17:28794256-28794541(+)$1	285	225	247	11.5329
=========oooooo=======	chr7:45932600-45932815(+)$1	215	168	190	14.5612
ccc[eeeeeooooooeeeee]c	chr8:80948891-80949180(-)$1	289	201	223	10.1509
iiiiiiiiiooooooiiiiiii	chr16:18803139-18803399(-)$1	260	12	34	14.9680
iiiii!!bboooooobb22iii	chr6:17615504-17615773(-)$1	269	5	27	12.6707
gggggg!!aooooooa22gggg	chr14:103195489-103195773(+)$1	284	225	247	12.4129
ggggg[cccooooooccc333g	chr11:62283806-62284049(-)$1	243	5	27	12.8960
===========mmmm=======	chr11:12965784-12966058(+)$1	274	226	248	10.6476
iiiiiiiiinnnnniiiiiiii	chr5:32601151-32601423(+)$1	272	175	197	11.4287
iiiiiiiiillliiiiiiiii]	chr10:63856462-63856755(+)$1	293	23	45	11.2556
==========lll=========	chr13:41131856-41132110(-)$1	254	177	199	11.7190
[iiiiiiiiillliiiiiiiii	chr1:94982758-94983032(+)$1	274	16	38	11.6674
ggggggg[annnnnaggggggg	chr13:113567504-113567754(+)$1	250	66	88	9.9806
==========nnnnn=======	chr17:7016695-7016974(-)$1	279	171	193	11.0078
ee[bb[cccooooooccc]bbe	chr3:156869340-156869627(-)$1	287	7	29	10.6397
b[gggggggooooooggggggg	chr19:57323865-57324128(-)$1	263	191	213	13.3391
!hhhhhhhhoooooohhhhhhh	chr11:33377955-33378252(+)$1	297	160	182	12.4829
===========lll========	chr11:115044446-115044690(-)$1	244	64	86	11.4991
ccgggggggooooooggggggg	chr6:7287857-7288083(-)$1	226	158	180	13.4194
==========mmmm========	chr6:132269585-132269794(-)$1	209	0	22	10.9792
iiiiiiiiiooooooiiiiiii	chr12:71979917-71980183(+)$1	266	69	91	14.9680
iiiiiiiiimmmmiiiiiiiii	chr11:9610597-9610842(+)$1	245	54	76	11.1270
ccc####bboooooobb4444c	chr5:108671129-108671365(-)$1	236	146	168	9.9533
fhhhhhhhhoooooohhhhhhh	chr3:27417036-27417325(-)$1	289	127	149	12.2811
::gggggggooooooggggggg	chr9:99262406-99262675(-)$1	269	157	179	11.3645
=========oooooo=======	chr5:1465898-1466134(-)$1	236	110	132	14.5612
iiiiiiiiiooooooiiiiiii	chr3:129369314-129369569(-)$1	255	130	152	14.9680
fhhhhhhhhoooooohhhhhhh	chr15:77241905-77242150(+)$1	245	188	210	12.2811
iiiiiiiiimmmmiiiiiiiii	chr16:72818431-72818655(-)$1	224	193	215	11.1270
eeeee[cccooooooccceeee	chr7:92243319-92243587(-)$1	268	214	236	10.8116
[hhhhhhhhoooooohhhhhhh	chrX:41378569-41378873(-)$1	304	227	249	12.5050
d:gggggggooooooggggggg	chr1:39951517-39951798(+)$1	281	30	52	12.0727
:hhhhhhhhoooooohhhhhhh	chr15:83686054-83686313(-)$1	259	17	39	11.4884
e[ccc[cccoooooocccccc]	chr2:153505647-153505883(+)$1	236	96	118	11.9007
iiiiiiiiimmmmiiiiiiiii	chr5:150175932-150176270(+)$1	338	159	181	11.1270
:ccc!!cccooooooccc22cc	chr5:61681881-61682138(+)$1	257	212	234	10.9428
:iiiiiiiiillliiiiiiiii	chr5:96370499-96370747(+)$1	248	64	86	10.6508
gggg[ddddooooooddddggg	chr22:29449743-29450031(+)$1	288	142	164	10.9109
EEgggggggooooooggggggg	chr11:118279749-118280000(+)$1	251	223	245	11.1388
ffffffcccooooooccc22ff	chr4:146057750-146058003(-)$1	253	136	158	10.3292
(ccc!!cccooooooccc22cc	chr7:94298483-94298707(+)$1	224	124	146	11.1795
gggggg[bboooooobb]gggg	chr18:3277974-3278248(+)$1	274	204	226	12.4987

#otherMatches

#Seq PSSM
UCUGUCAUGAUUCACUAUUCUA	chr3:195776085-195776391(-)$1	306	57	79	12.0868
GUUGAAUGUUCCUAAAUAUUUA	chr4:174252819-174253078(-)$1	259	70	92	10.9792
UUGUAUAUAAAUGCAUAUGUAC	chr11:95503702-95503968(-)$1	266	7	29	11.4884
AAGUUGUAUAUUGAAAUAUAAU	chr15:25247379-25247625(+)$1	246	133	155	13.1308
UGUACUUCAUCUAUUUGUGUAC	chr18:56998159-56998430(-)$1	271	120	142	10.0948
AGUACCAUGUUUCCUUGUGGUG	chr16:23585415-23585701(+)$1	286	101	123	13.5567
UUAUUGUUCGCAUGGACAAUAA	chr5:96368335-96368576(+)$1	241	179	201	11.1270
UUUGUUUCUAUAACCAGAAAUA	chr7:4810877-4811139(+)$1	262	152	174	14.9680
GGGUAGUGAGUGGGAUCCUAUC	chr17:28794256-28794541(+)$1	285	225	247	11.5329
auauauauguauauguauauau	chr7:45932600-45932815(+)$1	215	168	190	14.5612
CUUAUGAAAACCAAAUUUUAAA	chr8:80948891-80949180(-)$1	289	201	223	10.1509
UCUUUAGGAAUGAACUUCUGAG	chr16:18803139-18803399(-)$1	260	12	34	14.9680
UAGAUCUAGUUCACUCUCCAUU	chr6:17615504-17615773(-)$1	269	5	27	12.6707
ACUGGGAAGGAACCACACCCCA	chr14:103195489-103195773(+)$1	284	225	247	12.4129
GAACUAUACAGAUAGGUAAAGA	chr11:62283806-62284049(-)$1	243	5	27	12.8960
UUUUUUAUAAAGUGCUUUGUAA	chr11:12965784-12966058(+)$1	274	226	248	10.6476
UUUUUAAUGUGCAUUAUUAAAA	chr5:32601151-32601423(+)$1	272	175	197	11.4287
AGAGGUUAUUGAGUAACCUUUG	chr10:63856462-63856755(+)$1	293	23	45	11.2556
GGUCCUUUGUCAAACGAGGGAU	chr13:41131856-41132110(-)$1	254	177	199	11.7190
AGUUUUUUUUAAAAAAAAAAAC	chr1:94982758-94983032(+)$1	274	16	38	11.6674
cucugugucuguauguaugggg	chr13:113567504-113567754(+)$1	250	66	88	9.9806
uguguguauugugugaguguau	chr17:7016695-7016974(-)$1	279	171	193	11.0078
UGCAAGCUCUCAUCCGAGAUUC	chr3:156869340-156869627(-)$1	287	7	29	10.6397
GUGCAGCAUCAGCUUAUGCUGC	chr19:57323865-57324128(-)$1	263	191	213	13.3391
UUUUAAAAUCUGCUAAUUUUAA	chr11:33377955-33378252(+)$1	297	160	182	12.4829
UUUGUGUUUUUUAAAGGAAUAU	chr11:115044446-115044690(-)$1	244	64	86	11.4991
UUUUCAGAAUUCAUCUUUUGAA	chr6:7287857-7288083(-)$1	226	158	180	13.4194
guguguguguguauauauauau	chr6:132269585-132269794(-)$1	209	0	22	10.9792
ACUGUAUAUAUGUAAAUAUAUA	chr12:71979917-71980183(+)$1	266	69	91	14.9680
CCAUGGGAUGAUGAUUCUGUGG	chr11:9610597-9610842(+)$1	245	54	76	11.1270
GCUAAAGAUUUCUCUAUAAUAA	chr5:108671129-108671365(-)$1	236	146	168	9.9533
GAUAUGAUGCUUAAAUAUUAUA	chr3:27417036-27417325(-)$1	289	127	149	12.2811
AUGUAUGUAGUUUGAUACAUAU	chr9:99262406-99262675(-)$1	269	157	179	11.3645
ugcacacgugugugugcgugug	chr5:1465898-1466134(-)$1	236	110	132	14.5612
UUUUAUUUUUCCUUUGAAAUAA	chr3:129369314-129369569(-)$1	255	130	152	14.9680
GGUUUUAUUGUAUGAAAUAGAA	chr15:77241905-77242150(+)$1	245	188	210	12.2811
Gaaauauauauauauauauuuu	chr16:72818431-72818655(-)$1	224	193	215	11.1270
UGCCACACACUGCCUUGUUGGC	chr7:92243319-92243587(-)$1	268	214	236	10.8116
GUUUUAAAGCACCCAUUUUAAG	chrX:41378569-41378873(-)$1	304	227	249	12.5050
AGUUAUAUUGUUAAAAGUGUAA	chr1:39951517-39951798(+)$1	281	30	52	12.0727
GUUAGCAUUUGUAAUAAUGCUA	chr15:83686054-83686313(-)$1	259	17	39	11.4884
CAGAUAUUUUGCUAUAAAAUCG	chr2:153505647-153505883(+)$1	236	96	118	11.9007
UAGAUGUGAUGAUUUAUAUUUA	chr5:150175932-150176270(+)$1	338	159	181	11.1270
CUGGAAUUAUUAUUUUAAAACC	chr5:61681881-61682138(+)$1	257	212	234	10.9428
CUCAUUGCCUAGGGGGCAAUGG	chr5:96370499-96370747(+)$1	248	64	86	10.6508
GGUGUGGGAUUGAGUUCUCUGC	chr22:29449743-29450031(+)$1	288	142	164	10.9109
CUGGGUUGUCUUUAAACAACCC	chr11:118279749-118280000(+)$1	251	223	245	11.1388
GGAAAUCCAAUGAAAUGGCUGU	chr4:146057750-146058003(-)$1	253	136	158	10.3292
AUUGCUAUCCUUAAAGAUUUCA	chr7:94298483-94298707(+)$1	224	124	146	11.1795
CAGAAAAAUAUAUUCGUAUUUC	chr18:3277974-3278248(+)$1	274	204	226	12.4987

#DB
((((..(((......)))..))	chr3:195776085-195776391(-)$1	1	57	79	12.0868
((((((((((....))))))))	chr4:174252819-174253078(-)$1	1	70	92	10.9792
.((((((((......)))))))	chr11:95503702-95503968(-)$1	1	7	29	11.4884
(((((((((......)))))))	chr15:25247379-25247625(+)$1	1	133	155	13.1308
(((((..((......)).))))	chr18:56998159-56998430(-)$1	1	120	142	10.0948
..(((((((......)))))))	chr16:23585415-23585701(+)$1	1	101	123	13.5567
(((((((((....)))))))))	chr5:96368335-96368576(+)$1	1	179	201	11.1270
(((((((((......)))))))	chr7:4810877-4811139(+)$1	1	152	174	14.9680
((((((.((......)))))))	chr17:28794256-28794541(+)$1	1	225	247	11.5329
(((((((((......)))))))	chr7:45932600-45932815(+)$1	1	168	190	14.5612
(((.(((((......))))).)	chr8:80948891-80949180(-)$1	1	201	223	10.1509
(((((((((......)))))))	chr16:18803139-18803399(-)$1	1	12	34	14.9680
(((((..((......))..)))	chr6:17615504-17615773(-)$1	1	5	27	12.6707
((((((..(......)..))))	chr14:103195489-103195773(+)$1	1	225	247	12.4129
(((((.(((......)))...)	chr11:62283806-62284049(-)$1	1	5	27	12.8960
(((((((((((....)))))))	chr11:12965784-12966058(+)$1	1	226	248	10.6476
(((((((((.....))))))))	chr5:32601151-32601423(+)$1	1	175	197	11.4287
(((((((((...))))))))).	chr10:63856462-63856755(+)$1	1	23	45	11.2556
((((((((((...)))))))))	chr13:41131856-41132110(-)$1	1	177	199	11.7190
.(((((((((...)))))))))	chr1:94982758-94983032(+)$1	1	16	38	11.6674
(((((((.(.....))))))))	chr13:113567504-113567754(+)$1	1	66	88	9.9806
((((((((((.....)))))))	chr17:7016695-7016974(-)$1	1	171	193	11.0078
((.((.(((......))).)))	chr3:156869340-156869627(-)$1	1	7	29	10.6397
(.(((((((......)))))))	chr19:57323865-57324128(-)$1	1	191	213	13.3391
.((((((((......)))))))	chr11:33377955-33378252(+)$1	1	160	182	12.4829
(((((((((((...))))))))	chr11:115044446-115044690(-)$1	1	64	86	11.4991
(((((((((......)))))))	chr6:7287857-7288083(-)$1	1	158	180	13.4194
((((((((((....))))))))	chr6:132269585-132269794(-)$1	1	0	22	10.9792
(((((((((......)))))))	chr12:71979917-71980183(+)$1	1	69	91	14.9680
(((((((((....)))))))))	chr11:9610597-9610842(+)$1	1	54	76	11.1270
(((....((......))....)	chr5:108671129-108671365(-)$1	1	146	168	9.9533
)((((((((......)))))))	chr3:27417036-27417325(-)$1	1	127	149	12.2811
..(((((((......)))))))	chr9:99262406-99262675(-)$1	1	157	179	11.3645
(((((((((......)))))))	chr5:1465898-1466134(-)$1	1	110	132	14.5612
(((((((((......)))))))	chr3:129369314-129369569(-)$1	1	130	152	14.9680
)((((((((......)))))))	chr15:77241905-77242150(+)$1	1	188	210	12.2811
(((((((((....)))))))))	chr16:72818431-72818655(-)$1	1	193	215	11.1270
(((((.(((......)))))))	chr7:92243319-92243587(-)$1	1	214	236	10.8116
.((((((((......)))))))	chrX:41378569-41378873(-)$1	1	227	249	12.5050
).(((((((......)))))))	chr1:39951517-39951798(+)$1	1	30	52	12.0727
.((((((((......)))))))	chr15:83686054-83686313(-)$1	1	17	39	11.4884
(.(((.(((......)))))).	chr2:153505647-153505883(+)$1	1	96	118	11.9007
(((((((((....)))))))))	chr5:150175932-150176270(+)$1	1	159	181	11.1270
.(((..(((......)))..))	chr5:61681881-61682138(+)$1	1	212	234	10.9428
.(((((((((...)))))))))	chr5:96370499-96370747(+)$1	1	64	86	10.6508
((((.((((......)))))))	chr22:29449743-29450031(+)$1	1	142	164	10.9109
))(((((((......)))))))	chr11:118279749-118280000(+)$1	1	223	245	11.1388
(((((((((......)))..))	chr4:146057750-146058003(-)$1	1	136	158	10.3292
.(((..(((......)))..))	chr7:94298483-94298707(+)$1	1	124	146	11.1795
((((((.((......)).))))	chr18:3277974-3278248(+)$1	1	204	226	12.4987

#PSSM
i : 0.21	= : 0.16	: : 0.10	g : 0.10	f : 0.08	e : 0.08	c : 0.06	h : 0.04	! : 0.04	[ : 0.04	b : 0.02	d : 0.02	E : 0.02	( : 0.02	
i : 0.25	h : 0.16	= : 0.16	c : 0.10	g : 0.10	e : 0.06	f : 0.04	[ : 0.04	: : 0.04	! : 0.02	E : 0.02	
i : 0.25	g : 0.23	h : 0.16	= : 0.16	c : 0.10	e : 0.04	[ : 0.02	f : 0.02	
i : 0.25	g : 0.23	h : 0.16	= : 0.16	c : 0.06	e : 0.04	[ : 0.02	b : 0.02	# : 0.02	f : 0.02	
i : 0.25	g : 0.21	= : 0.16	h : 0.14	! : 0.06	e : 0.06	b : 0.02	# : 0.02	c : 0.02	[ : 0.02	f : 0.02	
i : 0.23	g : 0.19	= : 0.16	h : 0.14	! : 0.10	[ : 0.08	e : 0.02	# : 0.02	d : 0.02	f : 0.02	
i : 0.23	c : 0.16	= : 0.16	g : 0.16	h : 0.12	! : 0.06	[ : 0.04	e : 0.02	# : 0.02	d : 0.02	
i : 0.23	c : 0.16	= : 0.16	g : 0.14	h : 0.12	b : 0.10	e : 0.02	! : 0.02	[ : 0.02	d : 0.02	
i : 0.23	c : 0.16	= : 0.16	g : 0.14	h : 0.12	b : 0.10	a : 0.04	e : 0.02	d : 0.02	
o : 0.70	= : 0.12	m : 0.08	n : 0.04	i : 0.04	l : 0.02	
o : 0.70	m : 0.12	l : 0.08	n : 0.06	= : 0.04	
o : 0.70	m : 0.14	l : 0.10	n : 0.06	
o : 0.70	m : 0.14	l : 0.08	n : 0.06	i : 0.02	
o : 0.70	i : 0.14	m : 0.06	n : 0.06	= : 0.02	l : 0.02	
o : 0.70	i : 0.16	= : 0.08	m : 0.02	a : 0.02	n : 0.02	
i : 0.23	c : 0.16	= : 0.16	g : 0.16	h : 0.12	b : 0.10	e : 0.02	a : 0.02	d : 0.02	
i : 0.23	c : 0.16	= : 0.16	g : 0.16	h : 0.12	b : 0.10	e : 0.02	2 : 0.02	d : 0.02	
i : 0.23	c : 0.16	= : 0.16	g : 0.16	h : 0.14	] : 0.04	2 : 0.04	e : 0.02	4 : 0.02	d : 0.02	
i : 0.23	g : 0.19	= : 0.16	h : 0.14	2 : 0.10	e : 0.06	3 : 0.02	] : 0.02	4 : 0.02	c : 0.02	d : 0.02	
i : 0.25	g : 0.21	= : 0.16	h : 0.14	2 : 0.08	e : 0.06	3 : 0.02	b : 0.02	4 : 0.02	c : 0.02	
i : 0.25	g : 0.21	h : 0.16	= : 0.16	c : 0.06	e : 0.04	] : 0.02	3 : 0.02	b : 0.02	4 : 0.02	f : 0.02	
g : 0.23	i : 0.23	h : 0.16	= : 0.16	c : 0.08	e : 0.06	] : 0.04	f : 0.02	

#score	596.8807130509102
#seq	50
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_transcript_m3_run2.txt

#BEAR
""ddddqqqqqqqqdddd33	chr19:5158770-5159067(-)$1	297	44	64	14.9131
b[ddddqqqqqqqqdddd]b	chr21:46894519-46894815(+)$1	296	142	162	14.3575
!!ddddqqqqqqqqddddcc	chr12:125398091-125398421(-)$1	330	296	316	14.7568
ddd[bbqqqqqqqqbb]ddd	chrX:13353500-13353787(+)$1	287	160	180	13.7084
ffffffqqqqqqqqffffff	chr21:44268579-44268797(-)$1	218	99	119	13.4378
e[bb[aqqqqqqqqabbeee	chr13:26828205-26828463(+)$1	258	215	235	13.2833
ffffffqqqqqqqqffffff	chr19:7704954-7705254(+)$1	300	23	43	13.4378
ggggggqqqqqqqqgggggg	chr5:145882920-145883202(+)$1	282	151	171	14.2573
""ddddqqqqqqqqdddd33	chr11:62481406-62481670(-)$1	264	234	254	14.9131
d[ddddqqqqqqqqdddd]d	chr11:58378999-58379312(+)$1	313	290	310	14.6125
cc[cccqqqqqqqqccc22c	chr22:42961187-42961433(-)$1	246	173	193	15.0351
ccccccqqqqqqqqccc]cc	chr15:66791638-66791889(-)$1	251	119	139	14.8527
:eeeeeqqqqqqqqeeeee:	chr12:56991287-56991570(-)$1	283	235	255	12.4683
""ddddqqqqqqqqdddddd	chr1:150198838-150199203(-)$1	365	245	265	14.3887
ddd[bbqqqqqqqqbb]ddd	chr1:109642795-109643000(+)$1	205	35	55	13.7084
ffffffqqqqqqqqffffff	chr5:179151635-179151885(+)$1	250	211	231	13.4378
ddddbbqqqqqqqqbb]ddd	chr7:148718003-148718339(-)$1	336	64	84	13.7080
ffffffqqqqqqqqffffff	chr1:24975313-24975568(+)$1	255	232	252	13.4378
eeecccqqqqqqqqccc]ee	chr9:131456819-131457056(+)$1	237	55	75	14.6622
:eeeeeqqqqqqqqeeeee:	chr12:122239361-122239618(-)$1	257	66	86	12.4683
[eeeeeqqqqqqqqeeeeec	chr1:16891201-16891515(-)$1	314	225	245	14.3300
[eeeeeqqqqqqqqeeeee]	chr2:168726328-168726589(-)$1	261	70	90	14.2926
b[ddddqqqqqqqqdddd]b	chr21:44268291-44268542(-)$1	251	201	221	14.3575
:eeeeeqqqqqqqqeeeeee	chr11:32610123-32610390(+)$1	267	205	225	13.1951
d[ddddqqqqqqqqdddd]d	chr8:95541192-95541452(-)$1	260	172	192	14.6125
g"""bbqqqqqqqqbb]ggg	chr17:26906283-26906557(-)$1	274	139	159	14.1217
eeeeeeqqqqqqqqeeeee4	chr5:33445329-33445616(+)$1	287	32	52	14.1376
deeeeeqqqqqqqqeeeee]	chr15:91517711-91517986(-)$1	275	21	41	14.1616
ccccccqqqqqqqqccc22c	chr2:232326571-232326829(-)$1	258	15	35	14.8631
b[ddddqqqqqqqqdddd]b	chr7:92243879-92244160(-)$1	281	25	45	14.3575
cc[cccqqqqqqqqccc]cc	chr7:127975841-127976150(-)$1	309	71	91	15.0247
""ddddqqqqqqqqdddd33	chr12:56991212-56991487(-)$1	275	222	242	14.9131
ddd[bbqqqqqqqqbb]ddd	chr11:65211465-65211793(+)$1	328	92	112	13.7084
g!!cccqqqqqqqqccc22g	chr6:44217972-44218197(+)$1	225	47	67	15.1915
f!!a[aqqqqqqqqa]a22f	chr12:76442926-76443131(-)$1	205	30	50	14.3405
c[ddddqqqqqqqqdddd]c	chr5:95087842-95088112(+)$1	270	101	121	14.8688
eeecccqqqqqqqqccc22e	chr1:205719028-205719264(-)$1	236	179	199	14.6545
##ddddqqqqqqqqdddd22	chr12:76449748-76449967(-)$1	219	119	139	14.4721
cc[cccqqqqqqqqccc]cc	chr19:54705034-54705275(+)$1	241	220	240	15.0247
!eeeeeqqqqqqqqeeeee2	chr12:76442879-76443126(-)$1	247	186	206	14.1705
"""cccqqqqqqqqccc333	chr3:184048967-184049257(+)$1	290	132	152	15.3483
cc[a[aqqqqqqqqaa]ccc	chrX:102933330-102933624(-)$1	294	243	263	14.3712
c!!cccqqqqqqqqccc22c	chr7:156626368-156626590(-)$1	222	124	144	15.2733
fffffaqqqqqqqqa]ffff	chr12:95879554-95879797(+)$1	243	184	204	13.5583
eeeeeeqqqqqqqqeeeee]	chr3:196214164-196214498(-)$1	334	21	41	14.1436
[cccbbqqqqqqqqbb]ccc	chr11:85374998-85375261(-)$1	263	122	142	14.0579
da[cccqqqqqqqqccc]a5	chr11:68660255-68660506(-)$1	251	70	90	14.0732
ggggggqqqqqqqqgggggg	chr6:7303698-7303973(-)$1	275	133	153	14.2573
gggg[aqqqqqqqqa]gggg	chr1:155883866-155884154(-)$1	288	20	40	14.2054
deeeeeqqqqqqqqeeeeeJ	chr1:1276040-1276338(-)$1	298	218	238	12.7620
g!!cccqqqqqqqqccc22g	chr6:44217997-44218207(+)$1	210	22	42	15.1915
cc[cccqqqqqqqqccc]cc	chr11:32610039-32610323(+)$1	284	65	85	15.0247
ffffffqqqqqqqqffffff	chr21:44269051-44269351(-)$1	300	2	22	13.4378
ggggggqqqqqqqqgggggg	chr18:75702136-75702397(-)$1	261	206	226	14.2573
ffffffqqqqqqqqffffff	chr5:81573488-81573753(-)$1	265	62	82	13.4378
c[ddddqqqqqqqqdddd]c	chr7:111928853-111929108(+)$1	255	219	239	14.8688
bbb[bbqqqqqqqqbb22bb	chr17:27074967-27075236(+)$1	269	23	43	12.3299
!!ddddqqqqqqqqdddd22	chr17:48820972-48821274(+)$1	302	251	271	14.6791
ddddbbqqqqqqqqbb]ddd	chr10:120797649-120797934(-)$1	285	45	65	13.7080
ggggggqqqqqqqqgggggg	chr8:17869088-17869434(+)$1	346	95	115	14.2573
ff!!bbqqqqqqqqbb22ff	chrX:53588970-53589221(-)$1	251	40	60	13.6341
e!!cccqqqqqqqqccc22e	chr8:48719631-48719928(-)$1	297	36	56	14.9932
hh[cccqqqqqqqqccc]hh	chr15:59191827-59192154(-)$1	327	172	192	14.2133
cc[cccqqqqqqqqccc]cc	chr16:2813224-2813485(+)$1	261	45	65	15.0247
deeeeeqqqqqqqqeeeee:	chr11:110108154-110108476(-)$1	322	35	55	13.3089
ddd[bbqqqqqqqqbb]ddd	chr1:109642814-109643022(+)$1	208	16	36	13.7084
####bbqqqqqqqqbbccc3	chr3:9487288-9487525(+)$1	237	23	43	13.9918

#otherMatches

#Seq PSSM
cuggcccuuucacuggccua	chr19:5158770-5159067(-)$1	297	44	64	14.9131
CCGUGGACGUGGACCCACAG	chr21:46894519-46894815(+)$1	296	142	162	14.3575
UCCACCCUGCACCUGGUGCU	chr12:125398091-125398421(-)$1	330	296	316	14.7568
CCAGGUAAGUAAUGACGUGG	chrX:13353500-13353787(+)$1	287	160	180	13.7084
GUGUGCUGUGAGGUGCGCGC	chr21:44268579-44268797(-)$1	218	99	119	13.4378
CAGCAGGAGCAGAACGCGCG	chr13:26828205-26828463(+)$1	258	215	235	13.2833
gugcauuugugucugugcau	chr19:7704954-7705254(+)$1	300	23	43	13.4378
UUUCAAACAGUACAUUGAAA	chr5:145882920-145883202(+)$1	282	151	171	14.2573
AUAGUUUCAUUUGUGACUUU	chr11:62481406-62481670(-)$1	264	234	254	14.9131
GGAUGUUGACGUAUACAUGC	chr11:58378999-58379312(+)$1	313	290	310	14.6125
ggcggguguccccucccuuc	chr22:42961187-42961433(-)$1	246	173	193	15.0351
CAGAGGAGAAGAAGCCUGCU	chr15:66791638-66791889(-)$1	251	119	139	14.8527
CCCUGUAUUGUUUGAUAGGA	chr12:56991287-56991570(-)$1	283	235	255	12.4683
AAUGAAAGAAGAAAUUCAGG	chr1:150198838-150199203(-)$1	365	245	265	14.3887
GCGGCCUGGGUCCUGGGUGU	chr1:109642795-109643000(+)$1	205	35	55	13.7084
ACAGUCAAGUUAAGGAUUGU	chr5:179151635-179151885(+)$1	250	211	231	13.4378
CCAGCUUUGUAACCAGUCUG	chr7:148718003-148718339(-)$1	336	64	84	13.7080
GUCGAUUUGAGAGUAUUGGC	chr1:24975313-24975568(+)$1	255	232	252	13.4378
UCUCAGCAUUAAUCCUGAAG	chr9:131456819-131457056(+)$1	237	55	75	14.6622
UAUGUUUUUACAAUAACGUC	chr12:122239361-122239618(-)$1	257	66	86	12.4683
CAAUUGUGGAUGCUUAAUUC	chr1:16891201-16891515(-)$1	314	225	245	14.3300
GAUGUUUCUUGCUUGACAUG	chr2:168726328-168726589(-)$1	261	70	90	14.2926
GCCGGCUCCUACCUGCUGUC	chr21:44268291-44268542(-)$1	251	201	221	14.3575
UUACUAACUUUuaauggugc	chr11:32610123-32610390(+)$1	267	205	225	13.1951
GGACUUUGGGGUUUAAGUAC	chr8:95541192-95541452(-)$1	260	172	192	14.6125
UAAAGAAGAAGCCAUCAGGA	chr17:26906283-26906557(-)$1	274	139	159	14.1217
UUCCUGGGGCAUCACAGGAU	chr5:33445329-33445616(+)$1	287	32	52	14.1376
UCAGCUGGAAGAAGAGUUGA	chr15:91517711-91517986(-)$1	275	21	41	14.1616
CCAGAGUCUAACAUCUCAUU	chr2:232326571-232326829(-)$1	258	15	35	14.8631
UGUGGAGUGGGUAAUCCAGG	chr7:92243879-92244160(-)$1	281	25	45	14.3575
GAAUCUAAACAUCAGGAAUC	chr7:127975841-127976150(-)$1	309	71	91	15.0247
UUAAAACCAUCACUUUUUUG	chr12:56991212-56991487(-)$1	275	222	242	14.9131
UUUGGAGGCUGAAGUUGAAG	chr11:65211465-65211793(+)$1	328	92	112	13.7084
UUACUUAGUUggagaaggaa	chr6:44217972-44218197(+)$1	225	47	67	15.1915
UUUCCCUACAUUAUGAGCCA	chr12:76442926-76443131(-)$1	205	30	50	14.3405
UGGAGUAUUUUAUGAUUCAA	chr5:95087842-95088112(+)$1	270	101	121	14.8688
GGUCAGUGCGGAGUCUGAGG	chr1:205719028-205719264(-)$1	236	179	199	14.6545
UUUAAGAAUGUUGACUUGCU	chr12:76449748-76449967(-)$1	219	119	139	14.4721
CUAUUCGUGGUUUAGGAAGG	chr19:54705034-54705275(+)$1	241	220	240	15.0247
AGCUAAAGUAAGAGUUGGUG	chr12:76442879-76443126(-)$1	247	186	206	14.1705
GGAAGGAAUUUCUACCUGAA	chr3:184048967-184049257(+)$1	290	132	152	15.3483
GAAGACUAUUUUUUGCAucc	chrX:102933330-102933624(-)$1	294	243	263	14.3712
GCCAUCGUCAACAGGAUUUC	chr7:156626368-156626590(-)$1	222	124	144	15.2733
ACCCACCCACACAAGAUGGG	chr12:95879554-95879797(+)$1	243	184	204	13.5583
GGAUUGCUCUUUAUUAAUCA	chr3:196214164-196214498(-)$1	334	21	41	14.1436
CAGGAGGAGAGUCGCUACCU	chr11:85374998-85375261(-)$1	263	122	142	14.0579
ACAGUCAUUGAAAAGACAGA	chr11:68660255-68660506(-)$1	251	70	90	14.0732
GGUGAACCUGAAGCUUCACC	chr6:7303698-7303973(-)$1	275	133	153	14.2573
GGGUUGUUUUUUCUCUAUUC	chr1:155883866-155884154(-)$1	288	20	40	14.2054
ugUCAGUAGUGGAUCUGGCU	chr1:1276040-1276338(-)$1	298	218	238	12.7620
UUACUUAGUUggagaaggaa	chr6:44217997-44218207(+)$1	210	22	42	15.1915
UAUCACUGUUGAUUGUGUUA	chr11:32610039-32610323(+)$1	284	65	85	15.0247
ACCAGGCAAAACUCCUUGGU	chr21:44269051-44269351(-)$1	300	2	22	13.4378
uuguagugagcuguuugcag	chr18:75702136-75702397(-)$1	261	206	226	14.2573
CUAAAAUAUUUAAUUUUUAG	chr5:81573488-81573753(-)$1	265	62	82	13.4378
UGUACCUGAUAAAUGGUAGA	chr7:111928853-111929108(+)$1	255	219	239	14.8688
ACCACCUCUCCCUUGGCAGG	chr17:27074967-27075236(+)$1	269	23	43	12.3299
AACUCAUUUUUAUUUGAGAA	chr17:48820972-48821274(+)$1	302	251	271	14.6791
CCAUCAGAAGAACGUGAAUg	chr10:120797649-120797934(-)$1	285	45	65	13.7080
AAAGCUGAAACUCAGGCUUU	chr8:17869088-17869434(+)$1	346	95	115	14.2573
AGGAUGAGGAGGAGCACACU	chrX:53588970-53589221(-)$1	251	40	60	13.6341
UGUAGAUGUUUCUUUCUCAG	chr8:48719631-48719928(-)$1	297	36	56	14.9932
GGCUGAAGAUGCCAUCACUC	chr15:59191827-59192154(-)$1	327	172	192	14.2133
CUCCACAACCCAAAGUGAAG	chr16:2813224-2813485(+)$1	261	45	65	15.0247
CUUCUUUUGAUAAUGAGAAU	chr11:110108154-110108476(-)$1	322	35	55	13.3089
GCGGCCUGGGUCCUGGGUGU	chr1:109642814-109643022(+)$1	208	16	36	13.7084
UACAGCUGAAUAUUGCCUCU	chr3:9487288-9487525(+)$1	237	23	43	13.9918

#DB
..((((........))))..	chr19:5158770-5159067(-)$1	1	44	64	14.9131
(.((((........)))).)	chr21:46894519-46894815(+)$1	1	142	162	14.3575
..((((........))))))	chr12:125398091-125398421(-)$1	1	296	316	14.7568
(((.((........)).)))	chrX:13353500-13353787(+)$1	1	160	180	13.7084
((((((........))))))	chr21:44268579-44268797(-)$1	1	99	119	13.4378
(.((.(........))))))	chr13:26828205-26828463(+)$1	1	215	235	13.2833
((((((........))))))	chr19:7704954-7705254(+)$1	1	23	43	13.4378
((((((........))))))	chr5:145882920-145883202(+)$1	1	151	171	14.2573
..((((........))))..	chr11:62481406-62481670(-)$1	1	234	254	14.9131
(.((((........)))).)	chr11:58378999-58379312(+)$1	1	290	310	14.6125
((.(((........)))..)	chr22:42961187-42961433(-)$1	1	173	193	15.0351
((((((........))).))	chr15:66791638-66791889(-)$1	1	119	139	14.8527
.(((((........))))).	chr12:56991287-56991570(-)$1	1	235	255	12.4683
..((((........))))))	chr1:150198838-150199203(-)$1	1	245	265	14.3887
(((.((........)).)))	chr1:109642795-109643000(+)$1	1	35	55	13.7084
((((((........))))))	chr5:179151635-179151885(+)$1	1	211	231	13.4378
((((((........)).)))	chr7:148718003-148718339(-)$1	1	64	84	13.7080
((((((........))))))	chr1:24975313-24975568(+)$1	1	232	252	13.4378
((((((........))).))	chr9:131456819-131457056(+)$1	1	55	75	14.6622
.(((((........))))).	chr12:122239361-122239618(-)$1	1	66	86	12.4683
.(((((........))))))	chr1:16891201-16891515(-)$1	1	225	245	14.3300
.(((((........))))).	chr2:168726328-168726589(-)$1	1	70	90	14.2926
(.((((........)))).)	chr21:44268291-44268542(-)$1	1	201	221	14.3575
.(((((........)))))(	chr11:32610123-32610390(+)$1	1	205	225	13.1951
(.((((........)))).)	chr8:95541192-95541452(-)$1	1	172	192	14.6125
(...((........)).)))	chr17:26906283-26906557(-)$1	1	139	159	14.1217
((((((........))))).	chr5:33445329-33445616(+)$1	1	32	52	14.1376
((((((........))))).	chr15:91517711-91517986(-)$1	1	21	41	14.1616
((((((........)))..)	chr2:232326571-232326829(-)$1	1	15	35	14.8631
(.((((........)))).)	chr7:92243879-92244160(-)$1	1	25	45	14.3575
((.(((........))).))	chr7:127975841-127976150(-)$1	1	71	91	15.0247
..((((........))))..	chr12:56991212-56991487(-)$1	1	222	242	14.9131
(((.((........)).)))	chr11:65211465-65211793(+)$1	1	92	112	13.7084
(..(((........)))..)	chr6:44217972-44218197(+)$1	1	47	67	15.1915
(..(.(........).)..)	chr12:76442926-76443131(-)$1	1	30	50	14.3405
(.((((........)))).)	chr5:95087842-95088112(+)$1	1	101	121	14.8688
((((((........)))..)	chr1:205719028-205719264(-)$1	1	179	199	14.6545
..((((........))))..	chr12:76449748-76449967(-)$1	1	119	139	14.4721
((.(((........))).))	chr19:54705034-54705275(+)$1	1	220	240	15.0247
.(((((........))))).	chr12:76442879-76443126(-)$1	1	186	206	14.1705
...(((........)))...	chr3:184048967-184049257(+)$1	1	132	152	15.3483
((.(.(........)).)))	chrX:102933330-102933624(-)$1	1	243	263	14.3712
(..(((........)))..)	chr7:156626368-156626590(-)$1	1	124	144	15.2733
((((((........).))))	chr12:95879554-95879797(+)$1	1	184	204	13.5583
((((((........))))).	chr3:196214164-196214498(-)$1	1	21	41	14.1436
.(((((........)).)))	chr11:85374998-85375261(-)$1	1	122	142	14.0579
((.(((........))).).	chr11:68660255-68660506(-)$1	1	70	90	14.0732
((((((........))))))	chr6:7303698-7303973(-)$1	1	133	153	14.2573
((((.(........).))))	chr1:155883866-155884154(-)$1	1	20	40	14.2054
)(((((........))))))	chr1:1276040-1276338(-)$1	1	218	238	12.7620
(..(((........)))..)	chr6:44217997-44218207(+)$1	1	22	42	15.1915
((.(((........))).))	chr11:32610039-32610323(+)$1	1	65	85	15.0247
((((((........))))))	chr21:44269051-44269351(-)$1	1	2	22	13.4378
((((((........))))))	chr18:75702136-75702397(-)$1	1	206	226	14.2573
((((((........))))))	chr5:81573488-81573753(-)$1	1	62	82	13.4378
(.((((........)))).)	chr7:111928853-111929108(+)$1	1	219	239	14.8688
(((.((........))..))	chr17:27074967-27075236(+)$1	1	23	43	12.3299
..((((........))))..	chr17:48820972-48821274(+)$1	1	251	271	14.6791
((((((........)).)))	chr10:120797649-120797934(-)$1	1	45	65	13.7080
((((((........))))))	chr8:17869088-17869434(+)$1	1	95	115	14.2573
((..((........))..))	chrX:53588970-53589221(-)$1	1	40	60	13.6341
(..(((........)))..)	chr8:48719631-48719928(-)$1	1	36	56	14.9932
((.(((........))).))	chr15:59191827-59192154(-)$1	1	172	192	14.2133
((.(((........))).))	chr16:2813224-2813485(+)$1	1	45	65	15.0247
)(((((........))))).	chr11:110108154-110108476(-)$1	1	35	55	13.3089
(((.((........)).)))	chr1:109642814-109643022(+)$1	1	16	36	13.7084
....((........))))).	chr3:9487288-9487525(+)$1	1	23	43	13.9918

#PSSM
d : 0.17	c : 0.16	f : 0.13	g : 0.11	e : 0.08	" : 0.07	b : 0.05	! : 0.04	: : 0.04	[ : 0.04	# : 0.02	h : 0.01	
e : 0.19	c : 0.13	[ : 0.11	f : 0.11	! : 0.10	" : 0.08	d : 0.08	g : 0.07	# : 0.02	a : 0.01	b : 0.01	h : 0.01	
d : 0.29	e : 0.19	[ : 0.11	f : 0.10	! : 0.08	g : 0.07	c : 0.04	b : 0.02	" : 0.02	# : 0.01	
c : 0.25	d : 0.23	e : 0.16	f : 0.10	[ : 0.07	g : 0.07	a : 0.02	b : 0.01	" : 0.01	! : 0.01	# : 0.01	
c : 0.23	d : 0.20	b : 0.16	e : 0.16	f : 0.10	[ : 0.05	g : 0.05	
c : 0.23	d : 0.20	b : 0.16	e : 0.16	f : 0.08	a : 0.07	g : 0.05	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.23	d : 0.20	b : 0.16	e : 0.16	f : 0.08	a : 0.07	g : 0.05	
c : 0.23	d : 0.20	b : 0.17	e : 0.16	f : 0.08	g : 0.05	] : 0.04	a : 0.01	
c : 0.25	d : 0.20	e : 0.16	] : 0.13	f : 0.10	g : 0.07	2 : 0.02	b : 0.01	a : 0.01	
d : 0.29	e : 0.17	2 : 0.14	] : 0.11	f : 0.10	g : 0.08	c : 0.04	3 : 0.01	
e : 0.19	2 : 0.14	c : 0.13	f : 0.11	] : 0.10	d : 0.10	g : 0.08	3 : 0.05	a : 0.01	b : 0.01	h : 0.01	
c : 0.20	d : 0.13	f : 0.13	g : 0.11	3 : 0.07	e : 0.07	b : 0.05	: : 0.04	] : 0.04	2 : 0.04	4 : 0.01	5 : 0.01	J : 0.01	h : 0.01	

#score	950.7630018994228
#seq	67
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_UTR_m1_run1.txt

#BEAR
:::ffffffmmmmffffff:	chr6:26158665-26158934(+)$1	269	146	166	15.7036
:::ffffffmmmmffffff:	chr6:26043355-26043591(-)$1	236	113	133	15.7036
:::ffffffmmmmffffff:	chr6:27860378-27860621(-)$1	243	121	141	15.7036
:::ffffffmmmmffffff:	chr6:26123600-26123855(-)$1	255	137	157	15.7036
cc:ffffffmmmmffffff:	chr1:149857670-149857939(-)$1	269	183	203	14.1981
:::ffffffmmmmffffff:	chr6:27101187-27101414(+)$1	227	103	123	15.7036
&&&ffffffmmmmffffff8	chr6:26200092-26200300(+)$1	208	100	120	14.3910
:::ffffffmmmmffffff:	chr6:26188889-26189109(-)$1	220	148	168	15.7036
:::ffffffmmmmffffff:	chr6:26205025-26205291(+)$1	266	200	220	15.7036
:::ffffffmmmmffffff:	chr6:27858039-27858258(-)$1	219	142	162	15.7036
:::ffffffmmmmffffff:	chr6:27806744-27806965(+)$1	221	120	140	15.7036
:::ffffffmmmmffffff:	chr6:26104348-26104600(+)$1	252	193	213	15.7036
%%%ffffffmmmmffffff6	chr1:149813687-149813993(-)$1	306	185	205	14.2996
GGGffffffmmmmffffff:	chr6:27115139-27115405(+)$1	266	182	202	14.5406
cc:ffffffmmmmffffff:	chr1:149857633-149857849(-)$1	216	93	113	14.1981
'''ffffffmmmmffffff>	chr6:26022126-26022351(+)$1	225	128	148	14.4824
:::ffffffmmmmffffff:	chr6:26205091-26205348(+)$1	257	134	154	15.7036
:::ffffffmmmmffffff:	chr6:26200100-26200304(+)$1	204	92	112	15.7036
:::ffffffmmmmffffff:	chr6:27792118-27792355(+)$1	237	115	135	15.7036
'''ffffffmmmmffffff>	chr6:26022151-26022377(+)$1	226	103	123	14.4824
$$$ffffffmmmmffffff8	chr6:26217459-26217694(+)$1	235	182	202	14.1745
:::ffffffmmmmffffff:	chr6:27798852-27799106(-)$1	254	132	152	15.7036
:::ffffffmmmmffffff:	chr6:27101168-27101387(+)$1	219	122	142	15.7036
&&&ffffffmmmmffffff5	chr1:228645004-228645246(-)$1	242	158	178	14.1972
$$$ffffffmmmmffffff8	chr6:26217501-26217742(+)$1	241	140	160	14.1745
:::ffffffmmmmffffff:	chr6:25727464-25727672(+)$1	208	85	105	15.7036
)))ffffffmmmmffffff>	chr11:118965498-118965722(-)$1	224	96	116	15.4366
:::ffffffmmmmffffff:	chr6:27805558-27805834(-)$1	276	153	173	15.7036
:::ffffffmmmmffffff:	chr6:27806772-27806986(+)$1	214	92	112	15.7036
:::ffffffmmmmffffff:	chr6:27857994-27858239(-)$1	245	123	143	15.7036
:::ffffffmmmmffffff:	chr6:26157167-26157441(+)$1	274	152	172	15.7036
:::ffffffmmmmffffff:	chr6:26200065-26200292(+)$1	227	127	147	15.7036
:::ffffffmmmmffffff:	chr6:26250269-26250527(-)$1	258	136	156	15.7036
+++ffffffmmmmffffff5	chr6:26198977-26199246(-)$1	269	211	231	15.2178
:::ffffffmmmmffffffD	chr1:22054283-22054610(-)$1	327	125	145	15.1288
+++ffffffmmmmffffff7	chr6:26124750-26124979(+)$1	229	143	163	15.4556
c::ffffffmmmmffffff:	chr6:26045961-26046195(+)$1	234	112	132	14.9722
:::ffffffmmmmffffff:	chr6:27107355-27107598(+)$1	243	74	94	15.7036
:::ffffffmmmmffffff:	chr6:26031720-26031964(-)$1	244	121	141	15.7036
:::ffffffmmmmffffff:	chr6:27792098-27792318(+)$1	220	135	155	15.7036
D::ffffffmmmmffffff:	chr6:27775158-27775403(-)$1	245	123	143	15.0904
$$$ffffffmmmmffffff8	chr6:26217494-26217701(+)$1	207	147	167	14.1745
:::ffffffmmmmffffff:	chr6:27107322-27107555(+)$1	233	107	127	15.7036
:::ffffffmmmmffffffC	chr6:26027025-26027257(-)$1	232	110	130	15.3786
:::ffffffmmmmffffff:	chr6:27107261-27107520(+)$1	259	168	188	15.7036
)))ffffffmmmmffffff>	chr11:118965445-118965677(-)$1	232	51	71	15.4366
:::ffffffmmmmffffff:	chr6:26217549-26217763(+)$1	214	92	112	15.7036
:::ffffffmmmmffffff:	chr6:27860421-27860671(-)$1	250	171	191	15.7036
:::ffffffmmmmffffff:	chr6:26200104-26200315(+)$1	211	88	108	15.7036
:::ffffffmmmmffffff:	chr6:26285248-26285477(-)$1	229	100	120	15.7036
:::ffffffmmmmffffff:	chr6:26285277-26285486(-)$1	209	109	129	15.7036
:::ffffffmmmmffffff:	chr1:149857649-149857870(-)$1	221	114	134	15.7036
:::ffffffmmmmffffff:	chr6:26217542-26217749(+)$1	207	99	119	15.7036
:::ffffffmmmmffffff:	chr6:26234369-26234611(-)$1	242	148	168	15.7036
+++ffffffmmmmffffff7	chr6:26124801-26125016(+)$1	215	92	112	15.4556
)))ffffffmmmmffffff>	chr11:118965522-118965771(-)$1	249	145	165	15.4366
:::ffffffmmmmffffff:	chr1:149783334-149783576(-)$1	242	118	138	15.7036
:::ffffffmmmmffffff:	chr6:26033221-26033504(-)$1	283	160	180	15.7036
:::ffffffmmmmffffffd	chr1:228646099-228646358(+)$1	259	136	156	14.8195
)))ffffffmmmmffffff>	chr11:118965477-118965698(-)$1	221	72	92	15.4366
+++ffffffmmmmffffff7	chr6:26124779-26125000(+)$1	221	114	134	15.4556
:::ffffffmmmmffffff:	chr6:27776274-27776518(+)$1	244	147	167	15.7036
:::ffffffmmmmffffffb	chr6:26055868-26056072(-)$1	204	82	102	15.3711
:::ffffffmmmmffffffb	chr6:26124816-26125063(+)$1	247	77	97	15.3711
:::ffffffmmmmffffff:	chr6:25726191-25726442(-)$1	251	128	148	15.7036
:::ffffffmmmmffffff:	chr6:27806700-27806930(+)$1	230	164	184	15.7036
:::ffffffmmmmffffff:	chr6:26055910-26056117(-)$1	207	127	147	15.7036
:::ffffffmmmmffffff:	chr6:26123595-26123800(-)$1	205	82	102	15.7036
:::ffffffmmmmffffff:	chr6:27100038-27100299(-)$1	261	181	201	15.7036
:::ffffffmmmmffffffB	chr6:27834471-27834760(-)$1	289	167	187	15.4567
:::ffffffmmmmffffff:	chr6:27858058-27858280(-)$1	222	164	184	15.7036
:::ffffffmmmmffffff:	chr6:27806730-27806944(+)$1	214	134	154	15.7036
:::ffffffmmmmffffffb	chr6:26055872-26056103(-)$1	231	113	133	15.3711
:::ffffffmmmmffffffb	chr16:11931363-11931618(-)$1	255	137	157	15.3711
:::ffffffmmmmffffffb	chr6:26285310-26285531(-)$1	221	154	174	15.3711
:::ffffffmmmmffffffb	chr6:26285290-26285510(-)$1	220	133	153	15.3711
:::ffffffmmmmffffff:	chr6:27806765-27806972(+)$1	207	99	119	15.7036
:::ffffffmmmmffffff:	chr6:26252152-26252401(+)$1	249	127	147	15.7036
:::ffffffmmmmffffff:	chr6:26188839-26189089(-)$1	250	128	148	15.7036
:::ffffffmmmmffffff:	chr6:25727431-25727664(+)$1	233	118	138	15.7036

#otherMatches

#Seq PSSM
AAAGGCUCUUUUAAGAGCCA	chr6:26158665-26158934(+)$1	269	146	166	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:26043355-26043591(-)$1	236	113	133	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:27860378-27860621(-)$1	243	121	141	15.7036
AAAGGCUCUUUUAAGAGCCA	chr6:26123600-26123855(-)$1	255	137	157	15.7036
AAAGGCUCUUUUCAGAGCCA	chr1:149857670-149857939(-)$1	269	183	203	14.1981
AACGGCUCUUUUCAGGGCCA	chr6:27101187-27101414(+)$1	227	103	123	15.7036
AAAGGCUCUUUUAAGAGCCA	chr6:26200092-26200300(+)$1	208	100	120	14.3910
AACGGCCCUUUUCAGGGCCA	chr6:26188889-26189109(-)$1	220	148	168	15.7036
AAAGGCCCUUUUCAGGGCCG	chr6:26205025-26205291(+)$1	266	200	220	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:27858039-27858258(-)$1	219	142	162	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:27806744-27806965(+)$1	221	120	140	15.7036
AAAGGCCCUUUUCAGGGCCG	chr6:26104348-26104600(+)$1	252	193	213	15.7036
AAAGGCUCUUUUCAGAGCCA	chr1:149813687-149813993(-)$1	306	185	205	14.2996
AAAGGCUCUUUUCAGAGCCA	chr6:27115139-27115405(+)$1	266	182	202	14.5406
AAAGGCUCUUUUCAGAGCCA	chr1:149857633-149857849(-)$1	216	93	113	14.1981
AAAGGCCCUUUUCAGGGCCG	chr6:26022126-26022351(+)$1	225	128	148	14.4824
AAAGGCCCUUUUCAGGGCCG	chr6:26205091-26205348(+)$1	257	134	154	15.7036
AAAGGCUCUUUUAAGAGCCA	chr6:26200100-26200304(+)$1	204	92	112	15.7036
AAAGGCCCUUUUCAGGGCCA	chr6:27792118-27792355(+)$1	237	115	135	15.7036
AAAGGCCCUUUUCAGGGCCG	chr6:26022151-26022377(+)$1	226	103	123	14.4824
AAAGGCUCUUUUCAGAGCCA	chr6:26217459-26217694(+)$1	235	182	202	14.1745
AAAGGCCCUUUUUAGGGCCC	chr6:27798852-27799106(-)$1	254	132	152	15.7036
AACGGCUCUUUUCAGGGCCA	chr6:27101168-27101387(+)$1	219	122	142	15.7036
AAAGGCUCUUUUCAGAGCCA	chr1:228645004-228645246(-)$1	242	158	178	14.1972
AAAGGCUCUUUUCAGAGCCA	chr6:26217501-26217742(+)$1	241	140	160	14.1745
AAAGGCUCUUUUCAGAGCCA	chr6:25727464-25727672(+)$1	208	85	105	15.7036
AAAGGCCCUUUUAAGGGCCA	chr11:118965498-118965722(-)$1	224	96	116	15.4366
AAAGGUUCUUUUCAGAGCCA	chr6:27805558-27805834(-)$1	276	153	173	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:27806772-27806986(+)$1	214	92	112	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:27857994-27858239(-)$1	245	123	143	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:26157167-26157441(+)$1	274	152	172	15.7036
AAAGGCUCUUUUAAGAGCCA	chr6:26200065-26200292(+)$1	227	127	147	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:26250269-26250527(-)$1	258	136	156	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:26198977-26199246(-)$1	269	211	231	15.2178
UUAAGCCUUUUUAAAGGCUG	chr1:22054283-22054610(-)$1	327	125	145	15.1288
AAAGGCUCUUUUCAGAGCCC	chr6:26124750-26124979(+)$1	229	143	163	15.4556
AAAGGCUCUUUUCAGAGCCA	chr6:26045961-26046195(+)$1	234	112	132	14.9722
AAAGGCCCUUUUUAGGGCCC	chr6:27107355-27107598(+)$1	243	74	94	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:26031720-26031964(-)$1	244	121	141	15.7036
AAAGGCCCUUUUCAGGGCCA	chr6:27792098-27792318(+)$1	220	135	155	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:27775158-27775403(-)$1	245	123	143	15.0904
AAAGGCUCUUUUCAGAGCCA	chr6:26217494-26217701(+)$1	207	147	167	14.1745
AAAGGCCCUUUUUAGGGCCC	chr6:27107322-27107555(+)$1	233	107	127	15.7036
AAUGGCCCUUUUCAGGGCCG	chr6:26027025-26027257(-)$1	232	110	130	15.3786
AAAGGCCCUUUUUAGGGCCC	chr6:27107261-27107520(+)$1	259	168	188	15.7036
AAAGGCCCUUUUAAGGGCCA	chr11:118965445-118965677(-)$1	232	51	71	15.4366
AAAGGCUCUUUUCAGAGCCA	chr6:26217549-26217763(+)$1	214	92	112	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:27860421-27860671(-)$1	250	171	191	15.7036
AAAGGCUCUUUUAAGAGCCA	chr6:26200104-26200315(+)$1	211	88	108	15.7036
AAAGGCCCUUUUCAGGGCCG	chr6:26285248-26285477(-)$1	229	100	120	15.7036
AAAGGCCCUUUUCAGGGCCG	chr6:26285277-26285486(-)$1	209	109	129	15.7036
AAAGGCUCUUUUCAGAGCCA	chr1:149857649-149857870(-)$1	221	114	134	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:26217542-26217749(+)$1	207	99	119	15.7036
AACGGCUCUUUUCAGAGCCA	chr6:26234369-26234611(-)$1	242	148	168	15.7036
AAAGGCUCUUUUCAGAGCCC	chr6:26124801-26125016(+)$1	215	92	112	15.4556
AAAGGCCCUUUUAAGGGCCA	chr11:118965522-118965771(-)$1	249	145	165	15.4366
AAAGGCUCUUUUCAGAGCCA	chr1:149783334-149783576(-)$1	242	118	138	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:26033221-26033504(-)$1	283	160	180	15.7036
AAAGGCUCUUUUCAGAGCCA	chr1:228646099-228646358(+)$1	259	136	156	14.8195
AAAGGCCCUUUUAAGGGCCA	chr11:118965477-118965698(-)$1	221	72	92	15.4366
AAAGGCUCUUUUCAGAGCCC	chr6:26124779-26125000(+)$1	221	114	134	15.4556
AAAGGCUCUUUUCAGAGCCA	chr6:27776274-27776518(+)$1	244	147	167	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:26055868-26056072(-)$1	204	82	102	15.3711
AAAGGCUCUUUUCAGAGCCC	chr6:26124816-26125063(+)$1	247	77	97	15.3711
AAAGGCUCUUUUCAGAGCCA	chr6:25726191-25726442(-)$1	251	128	148	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:27806700-27806930(+)$1	230	164	184	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:26055910-26056117(-)$1	207	127	147	15.7036
AAAGGCUCUUUUAAGAGCCA	chr6:26123595-26123800(-)$1	205	82	102	15.7036
AACGGCUCUUUUAAGAGCCA	chr6:27100038-27100299(-)$1	261	181	201	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:27834471-27834760(-)$1	289	167	187	15.4567
AAAGGCUCUUUUCAGAGCCA	chr6:27858058-27858280(-)$1	222	164	184	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:27806730-27806944(+)$1	214	134	154	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:26055872-26056103(-)$1	231	113	133	15.3711
uaaucccagcacuuugggag	chr16:11931363-11931618(-)$1	255	137	157	15.3711
AAAGGCCCUUUUCAGGGCCG	chr6:26285310-26285531(-)$1	221	154	174	15.3711
AAAGGCCCUUUUCAGGGCCG	chr6:26285290-26285510(-)$1	220	133	153	15.3711
AAAGGCUCUUUUCAGAGCCA	chr6:27806765-27806972(+)$1	207	99	119	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:26252152-26252401(+)$1	249	127	147	15.7036
AACGGCCCUUUUCAGGGCCA	chr6:26188839-26189089(-)$1	250	128	148	15.7036
AAAGGCUCUUUUCAGAGCCA	chr6:25727431-25727664(+)$1	233	118	138	15.7036

#DB
...((((((....)))))).	chr6:26158665-26158934(+)$1	1	146	166	15.7036
...((((((....)))))).	chr6:26043355-26043591(-)$1	1	113	133	15.7036
...((((((....)))))).	chr6:27860378-27860621(-)$1	1	121	141	15.7036
...((((((....)))))).	chr6:26123600-26123855(-)$1	1	137	157	15.7036
)).((((((....)))))).	chr1:149857670-149857939(-)$1	1	183	203	14.1981
...((((((....)))))).	chr6:27101187-27101414(+)$1	1	103	123	15.7036
...((((((....)))))).	chr6:26200092-26200300(+)$1	1	100	120	14.3910
...((((((....)))))).	chr6:26188889-26189109(-)$1	1	148	168	15.7036
...((((((....)))))).	chr6:26205025-26205291(+)$1	1	200	220	15.7036
...((((((....)))))).	chr6:27858039-27858258(-)$1	1	142	162	15.7036
...((((((....)))))).	chr6:27806744-27806965(+)$1	1	120	140	15.7036
...((((((....)))))).	chr6:26104348-26104600(+)$1	1	193	213	15.7036
...((((((....)))))).	chr1:149813687-149813993(-)$1	1	185	205	14.2996
(((((((((....)))))).	chr6:27115139-27115405(+)$1	1	182	202	14.5406
)).((((((....)))))).	chr1:149857633-149857849(-)$1	1	93	113	14.1981
...((((((....)))))).	chr6:26022126-26022351(+)$1	1	128	148	14.4824
...((((((....)))))).	chr6:26205091-26205348(+)$1	1	134	154	15.7036
...((((((....)))))).	chr6:26200100-26200304(+)$1	1	92	112	15.7036
...((((((....)))))).	chr6:27792118-27792355(+)$1	1	115	135	15.7036
...((((((....)))))).	chr6:26022151-26022377(+)$1	1	103	123	14.4824
...((((((....)))))).	chr6:26217459-26217694(+)$1	1	182	202	14.1745
...((((((....)))))).	chr6:27798852-27799106(-)$1	1	132	152	15.7036
...((((((....)))))).	chr6:27101168-27101387(+)$1	1	122	142	15.7036
...((((((....)))))).	chr1:228645004-228645246(-)$1	1	158	178	14.1972
...((((((....)))))).	chr6:26217501-26217742(+)$1	1	140	160	14.1745
...((((((....)))))).	chr6:25727464-25727672(+)$1	1	85	105	15.7036
...((((((....)))))).	chr11:118965498-118965722(-)$1	1	96	116	15.4366
...((((((....)))))).	chr6:27805558-27805834(-)$1	1	153	173	15.7036
...((((((....)))))).	chr6:27806772-27806986(+)$1	1	92	112	15.7036
...((((((....)))))).	chr6:27857994-27858239(-)$1	1	123	143	15.7036
...((((((....)))))).	chr6:26157167-26157441(+)$1	1	152	172	15.7036
...((((((....)))))).	chr6:26200065-26200292(+)$1	1	127	147	15.7036
...((((((....)))))).	chr6:26250269-26250527(-)$1	1	136	156	15.7036
...((((((....)))))).	chr6:26198977-26199246(-)$1	1	211	231	15.2178
...((((((....))))))(	chr1:22054283-22054610(-)$1	1	125	145	15.1288
...((((((....)))))).	chr6:26124750-26124979(+)$1	1	143	163	15.4556
)..((((((....)))))).	chr6:26045961-26046195(+)$1	1	112	132	14.9722
...((((((....)))))).	chr6:27107355-27107598(+)$1	1	74	94	15.7036
...((((((....)))))).	chr6:26031720-26031964(-)$1	1	121	141	15.7036
...((((((....)))))).	chr6:27792098-27792318(+)$1	1	135	155	15.7036
(..((((((....)))))).	chr6:27775158-27775403(-)$1	1	123	143	15.0904
...((((((....)))))).	chr6:26217494-26217701(+)$1	1	147	167	14.1745
...((((((....)))))).	chr6:27107322-27107555(+)$1	1	107	127	15.7036
...((((((....))))))(	chr6:26027025-26027257(-)$1	1	110	130	15.3786
...((((((....)))))).	chr6:27107261-27107520(+)$1	1	168	188	15.7036
...((((((....)))))).	chr11:118965445-118965677(-)$1	1	51	71	15.4366
...((((((....)))))).	chr6:26217549-26217763(+)$1	1	92	112	15.7036
...((((((....)))))).	chr6:27860421-27860671(-)$1	1	171	191	15.7036
...((((((....)))))).	chr6:26200104-26200315(+)$1	1	88	108	15.7036
...((((((....)))))).	chr6:26285248-26285477(-)$1	1	100	120	15.7036
...((((((....)))))).	chr6:26285277-26285486(-)$1	1	109	129	15.7036
...((((((....)))))).	chr1:149857649-149857870(-)$1	1	114	134	15.7036
...((((((....)))))).	chr6:26217542-26217749(+)$1	1	99	119	15.7036
...((((((....)))))).	chr6:26234369-26234611(-)$1	1	148	168	15.7036
...((((((....)))))).	chr6:26124801-26125016(+)$1	1	92	112	15.4556
...((((((....)))))).	chr11:118965522-118965771(-)$1	1	145	165	15.4366
...((((((....)))))).	chr1:149783334-149783576(-)$1	1	118	138	15.7036
...((((((....)))))).	chr6:26033221-26033504(-)$1	1	160	180	15.7036
...((((((....))))))(	chr1:228646099-228646358(+)$1	1	136	156	14.8195
...((((((....)))))).	chr11:118965477-118965698(-)$1	1	72	92	15.4366
...((((((....)))))).	chr6:26124779-26125000(+)$1	1	114	134	15.4556
...((((((....)))))).	chr6:27776274-27776518(+)$1	1	147	167	15.7036
...((((((....))))))(	chr6:26055868-26056072(-)$1	1	82	102	15.3711
...((((((....))))))(	chr6:26124816-26125063(+)$1	1	77	97	15.3711
...((((((....)))))).	chr6:25726191-25726442(-)$1	1	128	148	15.7036
...((((((....)))))).	chr6:27806700-27806930(+)$1	1	164	184	15.7036
...((((((....)))))).	chr6:26055910-26056117(-)$1	1	127	147	15.7036
...((((((....)))))).	chr6:26123595-26123800(-)$1	1	82	102	15.7036
...((((((....)))))).	chr6:27100038-27100299(-)$1	1	181	201	15.7036
...((((((....)))))))	chr6:27834471-27834760(-)$1	1	167	187	15.4567
...((((((....)))))).	chr6:27858058-27858280(-)$1	1	164	184	15.7036
...((((((....)))))).	chr6:27806730-27806944(+)$1	1	134	154	15.7036
...((((((....))))))(	chr6:26055872-26056103(-)$1	1	113	133	15.3711
...((((((....))))))(	chr16:11931363-11931618(-)$1	1	137	157	15.3711
...((((((....))))))(	chr6:26285310-26285531(-)$1	1	154	174	15.3711
...((((((....))))))(	chr6:26285290-26285510(-)$1	1	133	153	15.3711
...((((((....)))))).	chr6:27806765-27806972(+)$1	1	99	119	15.7036
...((((((....)))))).	chr6:26252152-26252401(+)$1	1	127	147	15.7036
...((((((....)))))).	chr6:26188839-26189089(-)$1	1	128	148	15.7036
...((((((....)))))).	chr6:25727431-25727664(+)$1	1	118	138	15.7036

#PSSM
: : 0.73	) : 0.05	+ : 0.05	c : 0.03	$ : 0.03	& : 0.02	' : 0.02	% : 0.01	G : 0.01	D : 0.01	
: : 0.76	) : 0.05	+ : 0.05	$ : 0.03	c : 0.02	& : 0.02	' : 0.02	% : 0.01	G : 0.01	
: : 0.78	) : 0.05	+ : 0.05	$ : 0.03	& : 0.02	' : 0.02	% : 0.01	G : 0.01	
f : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
m : 0.99	
m : 0.99	
m : 0.99	
m : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
f : 0.99	
: : 0.67	> : 0.07	b : 0.07	8 : 0.05	7 : 0.03	5 : 0.02	6 : 0.01	D : 0.01	C : 0.01	d : 0.01	B : 0.01	

#score	1233.1944968667067
#seq	80
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_transcript_m2_run2.txt

#BEAR
$===========qqqqqqqq===========iiii	chr14:21927532-21927848(-)$1	316	92	127	12.4737
dddd[a"""eeeeeooooooeeeee>>>>>>>>>>	chr2:232325282-232325521(-)$1	239	5	40	12.1703
===========cccnnnnnccc]===========:	chr16:2508625-2508872(+)$1	247	47	82	14.5108
dd"""bb"""ddddoooooodddd]bb333dddd:	chr15:91505355-91505611(+)$1	256	8	43	14.2770
:::ccc"""a!!bboooooobb22a333cccdddd	chr9:116171005-116171267(-)$1	262	161	196	13.4208
b!!==========ssssssssss==========22	chr21:33979856-33980081(-)$1	225	36	71	12.0635
ddd===========oooooo===========22dd	chr6:57033292-57033580(+)$1	288	231	266	17.1089
"dddd[eeeee[bboooooobb]eeeee22dddd4	chr17:3710978-3711290(-)$1	312	32	67	13.4278
==========[cccqqqqqqqqccc]=========	chr1:70716026-70716282(+)$1	256	153	188	12.7672
:::ccc"""a!!bboooooobb22a333cccdddd	chr9:116170939-116171205(-)$1	266	99	134	13.4208
dddd!!dddd!!bboooooobbdddd22dddd]bb	chr2:232326624-232326828(-)$1	204	13	48	12.8307
iiiiiiiii!!ddddnnnnndddd22iiiiiiiii	chr4:54325439-54325740(+)$1	301	154	189	12.4208
bb"""ccc!!ddddoooooodddd22ccc333bb2	chr3:112260549-112260832(-)$1	283	69	104	14.4455
========="""bboooooobb333==========	chr18:47015670-47015879(-)$1	209	35	70	19.2051
ddd"""bb"""cccrrrrrrrrrccc333bb22dd	chr7:156743279-156743520(+)$1	241	193	228	10.9367
bb]ddddgggggggoooooogggggggeeeee[bb	chr3:195776066-195776361(-)$1	295	111	146	12.1547
ddd[bb"""bb!!aooooooa22bb333bb]dddd	chr4:69202683-69203058(-)$1	375	1	36	14.2166
$$$$$ccc[eeeeeooooooeeeeeccc22ggggg	chr20:39709719-39709981(+)$1	262	222	257	12.7735
==========!!bboooooobb]===========5	chr1:165728658-165728916(-)$1	258	67	102	18.6684
b[eeeee[ccc!!aooooooa22ccc]eeeee]bb	chr22:40354372-40354641(+)$1	269	227	262	13.4411
dddeeeeebb[cccooooooccc]bb333eeeee]	chr20:52185116-52185375(-)$1	259	94	129	13.8399
eeee[a"""a[cccnnnnnccc]a333a]eeeee]	chr1:52305801-52306076(-)$1	275	73	108	13.0610
=======[a[ddddmmmmdddd]a==========]	chr16:10576134-10576432(+)$1	298	204	239	13.2394
"""ccc[ccc!!cccmmmmccc]ccccccccc333	chr7:148514879-148515161(-)$1	282	77	112	11.4123
===============lll================:	chr5:95099111-95099398(+)$1	287	211	246	14.5395
eeeeccc$$$$$bboooooobb4444ccc]eeeee	chr12:401895-402292(-)$1	397	341	376	14.4240
=======[ccc[aooooooaccc===========3	chr15:44107043-44107297(-)$1	254	16	51	17.4725
hhh!!iiiiiiiiiooooooiiiiiiiii]hhhhh	chr18:13124759-13125100(+)$1	341	17	52	14.4847
f[eeeee[bb[bb[aooooooa]bb]bb]eeeee]	chr10:70545839-70546076(+)$1	237	8	43	12.2073
ccc[ccc[ffffffooooooffffff]ccc]ccc8	chr6:24785823-24786170(+)$1	347	295	330	13.0768
==========ddddoooooodddd]==========	chr8:101930952-101931210(-)$1	258	133	168	17.5017
!a[ccc$$$$$cccooooooccc22ccc]a22eee	chr11:65267030-65267234(+)$1	204	27	62	14.8627
bb[===========oooooo===========]bb:	chr9:131456819-131457021(+)$1	202	85	120	16.5685
==!!a!!eeeee[aooooooa]eeeee22a333==	chr1:42642158-42642448(-)$1	290	161	196	14.6122
d[dddd!!ccc[bboooooobb]ccc22dddd]dd	chr20:3127083-3127427(-)$1	344	109	144	14.4011
dd"""ffffff[bboooooobb]ffffff4444dd	chr5:56558651-56558974(+)$1	323	263	298	13.9179
ff[dddd"""ddddoooooodddd333ddddffff	chr1:78409662-78409945(-)$1	283	244	279	13.8264
cc"""ffffff[bboooooobb]ffffff22ccc]	chr22:42024112-42024329(+)$1	217	128	163	13.9094
[iiiiiiiiicccqqqqqqqqccc]iiiiiiiii]	chr2:54091932-54092216(-)$1	284	100	135	11.6333
e####iiiiiiiii[bblllbb]iiiiiiiii22e	chr9:139734671-139734912(+)$1	241	15	50	11.5559
=========[a[cccmmmmccc]a==========c	chr10:65132334-65132644(-)$1	310	147	182	14.2306
dd####eeeee!!aooooooa22eeeee22dddd:	chr16:89350343-89350669(-)$1	326	39	74	12.6497
=======####cccooooooccc333=========	chr9:131456077-131456288(+)$1	211	88	123	19.3342
[dddd[a[bb!!bboooooobb]bb]addddccc:	chr7:11022555-11022818(+)$1	263	170	205	13.6070
#dddd[bb!!ddddoooooodddd22bbdddd333	chr10:70525540-70525759(+)$1	219	142	177	13.2528
====$$$$$eeeeeooooooeeeee==========	chr11:77336691-77336964(-)$1	273	10	45	15.6598
==========ddddmmmmdddd]==========77	chr21:34948975-34949227(+)$1	252	166	201	12.1862
=======####cccooooooccc333=========	chr9:131456113-131456340(+)$1	227	52	87	19.3342
!a[ccc$$$$$cccooooooccc22ccc]a22eee	chr11:65267027-65267230(+)$1	203	30	65	14.8627
ggg[dddd!!ddddoooooodddddddd]gggggg	chr7:150841057-150841326(+)$1	269	190	225	13.3081
cc[ccc!!ffffffooooooffffff22cccccc]	chr2:128255637-128255914(-)$1	277	48	83	13.5903
dd[bb####bb[bboooooobb]bb333bbdddd:	chr1:186315208-186315469(-)$1	261	180	215	14.0528
iiiiiiiii!!cccnnnnnccc]iiiiiiiii:::	chr14:39651274-39651530(+)$1	256	27	62	11.2107
ffff[bb####cccooooooccc333bb]ffffff	chr19:5600095-5600365(-)$1	270	72	107	14.3666
gggeeeee[ccc[aooooooaccc]eeeee:iiii	chr4:6709697-6710060(-)$1	363	84	119	13.0532

#otherMatches

#Seq PSSM
UUUUGUGUGGAAUCUUGUCUUUCCGUAUAAGUUGU	chr14:21927532-21927848(-)$1	316	92	127	12.4737
UCCUGUGAAAGCCAAGAACGUGGCugaggaugaag	chr2:232325282-232325521(-)$1	239	5	40	12.1703
AUUCUGGCCACCCUGGGUGGGGUGUGGUCGGGGUG	chr16:2508625-2508872(+)$1	247	47	82	14.5108
gcuuucguuugaauuuuaccauucuuguaugcagc	chr15:91505355-91505611(+)$1	256	8	43	14.2770
agaaguagaCAACUGAAAAGGGCGGGAGACUGUGG	chr9:116171005-116171267(-)$1	262	161	196	13.4208
CUCCUUUUUAUUUUUAUAGCUCCAAAUGAGAAGAU	chr21:33979856-33980081(-)$1	225	36	71	12.0635
UAACUUUGAAUUUAUAUAUUUAGAUUUAAAGGAUU	chr6:57033292-57033580(+)$1	288	231	266	17.1089
AUGUGUGUAUAAUGCCAAAUCACUGUAccccacaa	chr17:3710978-3711290(-)$1	312	32	67	13.4278
UGUAAAAGUAUGUUUACAAAUUGAUUUAUUUUUAU	chr1:70716026-70716282(+)$1	256	153	188	12.7672
agaaguagaCAACUGAAAAGGGCGGGAGACUGUGG	chr9:116170939-116171205(-)$1	266	99	134	13.4208
GCCAGAGUCUAACAUCUCAUUGGGACCAUGGUUAU	chr2:232326624-232326828(-)$1	204	13	48	12.8307
CCGAAGCUACACCUGCAGAAUAGGCAUGGUUUUGG	chr4:54325439-54325740(+)$1	301	154	189	12.4208
UUAAGUGAUUUUAAAUAUAAUUAAUUUCAAAGGAC	chr3:112260549-112260832(-)$1	283	69	104	14.4455
GAGCUCAUGGUCGGAUUAACCCAUACAUGAGCUCU	chr18:47015670-47015879(-)$1	209	35	70	19.2051
agggaauggggcgugaggcagaaaugacacagacu	chr7:156743279-156743520(+)$1	241	193	228	10.9367
GUAAACAAAUGAUAUGUCCUUAUCAUUGUAUAAAA	chr3:195776066-195776361(-)$1	295	111	146	12.1547
UCUGAUGAGCAAGGGAACAACACUGAGAAUgagga	chr4:69202683-69203058(-)$1	375	1	36	14.2166
CAACUUCUUAAGACAAAUGAGUUUUAGAUAUUUAU	chr20:39709719-39709981(+)$1	262	222	257	12.7735
UUUUACUGUGUUACUAUGUUGUUUACAGUGGAAAA	chr1:165728658-165728916(-)$1	258	67	102	18.6684
UGACCACUCAUGUCUAAUAUGCAAUGUGUGGUGAU	chr22:40354372-40354641(+)$1	269	227	262	13.4411
AAUGAUUUUGUAUUAUGUUGAAUCCACCCAAAUCU	chr20:52185116-52185375(-)$1	259	94	129	13.8399
agaugaguuugaugaugaacaugaugaugaucuug	chr1:52305801-52306076(-)$1	275	73	108	13.0610
GCUGAGGUGCAUUGUGAACAAUACCUUUAGUGACU	chr16:10576134-10576432(+)$1	298	204	239	13.2394
UAAUGUGCUGGAAUCAAAGGAUACAGACAGUGAUA	chr7:148514879-148515161(-)$1	282	77	112	11.4123
AGGUAAGUUGAUUUGUUGUAAGUUAGUUUACUUUG	chr5:95099111-95099398(+)$1	287	211	246	14.5395
AACUGCCAAAGGCCCUGCAAGGACAAGGUGAGUUC	chr12:401895-402292(-)$1	397	341	376	14.4240
GUUUUUCAGAUUGGCUCGACAUCGAAAAAUAGUGG	chr15:44107043-44107297(-)$1	254	16	51	17.4725
ACAUUUUUGUGUAAAGUAAAUUACAUAAGUUGUAU	chr18:13124759-13125100(+)$1	341	17	52	14.4847
AUGUGUAUUAAUGACUUUUUUGCCACUGUUAUAUU	chr10:70545839-70546076(+)$1	237	8	43	12.2073
CUCUGGAAUCAAAUUUCCUUGUUUGAAUCCUGGGA	chr6:24785823-24786170(+)$1	347	295	330	13.0768
CAUUUUAAAAAAGguguauuuuuucuuuuagaaug	chr8:101930952-101931210(-)$1	258	133	168	17.5017
acgcagacgaaaauggaaagauuaauugggagugg	chr11:65267030-65267234(+)$1	204	27	62	14.8627
CACUUUUUCUUUCAGGAGGAUGAAGGAGAAGAUGA	chr9:131456819-131457021(+)$1	202	85	120	16.5685
UUAGGAUUGUUGCUGCCAGAACUGAUAUGCAUGAA	chr1:42642158-42642448(-)$1	290	161	196	14.6122
UGUGUUGAGGAGACUUAAUUGUAUCCAAGGCAGGU	chr20:3127083-3127427(-)$1	344	109	144	14.4011
UUCUGUCUUAAAAUGUCCAGGUCUUAAGAAAAAAG	chr5:56558651-56558974(+)$1	323	263	298	13.9179
GGUAAAAUUUUCUACUUGACUGGGUUUUUUUUUAU	chr1:78409662-78409945(-)$1	283	244	279	13.8264
CUACCUUUUAAUUUAAGACAAAUUUAAAAACAGUA	chr22:42024112-42024329(+)$1	217	128	163	13.9094
GUUUUUGGUGCUGAAUAGAGCCAGUUGCUAAAAAA	chr2:54091932-54092216(-)$1	284	100	135	11.6333
GCAGGCCAGGACUGGGUGGCAUGCGGUCCUGGGAC	chr9:139734671-139734912(+)$1	241	15	50	11.5559
ggagucaugucuuagucaucuauguaugguuccuu	chr10:65132334-65132644(-)$1	310	147	182	14.2306
UCAAAAUUAGAGAAGAAGAAUGAUUUAAAAGAGGA	chr16:89350343-89350669(-)$1	326	39	74	12.6497
UUUUUUAAGGUUCCCGAUAUGGAUGAUgaagaagg	chr9:131456077-131456288(+)$1	211	88	123	19.3342
UGCUGAUGAUGAGGAACUGACCAAUGAUAGCCUGA	chr7:11022555-11022818(+)$1	263	170	205	13.6070
GCGUCGAGAAAGAAGAUAUAUUUUGCCUGAUGAAC	chr10:70525540-70525759(+)$1	219	142	177	13.2528
AAUUAAAAUUGAAUUGCAAUAUUCAGAUUUUCAAU	chr11:77336691-77336964(-)$1	273	10	45	15.6598
CAGUGUGGAAUGUUAAAUAACGCUUUUAUACUGUA	chr21:34948975-34949227(+)$1	252	166	201	12.1862
UUUUUUAAGGUUCCCGAUAUGGAUGAUgaagaagg	chr9:131456113-131456340(+)$1	227	52	87	19.3342
acgcagacgaaaauggaaagauuaauugggagugg	chr11:65267027-65267230(+)$1	203	30	65	14.8627
GCCAUUGAAAAGGGACAGGACCCUUCGGAGGUGCC	chr7:150841057-150841326(+)$1	269	190	225	13.3081
ACACUUAAUACAGAAGAAAAUCUGUAAGGAGGUUG	chr2:128255637-128255914(-)$1	277	48	83	13.5903
CCAUAGAGAGCAUGGAACAACAGGUAAAUAGGUUA	chr1:186315208-186315469(-)$1	261	180	215	14.0528
AAAAAAGAUUAACAUCCCUUGUCAUCUUUUUUAAA	chr14:39651274-39651530(+)$1	256	27	62	11.2107
UGAUAACCAUGUCUUUAAAUAGAACUGUAAUUAAG	chr19:5600095-5600365(-)$1	270	72	107	14.3666
AGACACUACGCUACUUGGUUGAGCCUGGUGAAGAA	chr4:6709697-6710060(-)$1	363	84	119	13.0532

#DB
.(((((((((((........)))))))))))))))	chr14:21927532-21927848(-)$1	1	92	127	12.4737
((((.(...(((((......)))))..........	chr2:232325282-232325521(-)$1	1	5	40	12.1703
((((((((((((((.....))).))))))))))).	chr16:2508625-2508872(+)$1	1	47	82	14.5108
((...((...((((......)))).))...)))).	chr15:91505355-91505611(+)$1	1	8	43	14.2770
...(((...(..((......))..)...)))((((	chr9:116171005-116171267(-)$1	1	161	196	13.4208
(..((((((((((..........))))))))))..	chr21:33979856-33980081(-)$1	1	36	71	12.0635
((((((((((((((......)))))))))))..))	chr6:57033292-57033580(+)$1	1	231	266	17.1089
.((((.(((((.((......)).)))))..)))).	chr17:3710978-3711290(-)$1	1	32	67	13.4278
((((((((((.(((........))).)))))))))	chr1:70716026-70716282(+)$1	1	153	188	12.7672
...(((...(..((......))..)...)))((((	chr9:116170939-116171205(-)$1	1	99	134	13.4208
((((..((((..((......))))))..)))).))	chr2:232326624-232326828(-)$1	1	13	48	12.8307
(((((((((..((((.....))))..)))))))))	chr4:54325439-54325740(+)$1	1	154	189	12.4208
((...(((..((((......))))..)))...)).	chr3:112260549-112260832(-)$1	1	69	104	14.4455
(((((((((...((......))...))))))))))	chr18:47015670-47015879(-)$1	1	35	70	19.2051
(((...((...(((.........)))...))..))	chr7:156743279-156743520(+)$1	1	193	228	10.9367
)).))))(((((((......)))))))(((((.((	chr3:195776066-195776361(-)$1	1	111	146	12.1547
(((.((...((..(......)..))...)).))))	chr4:69202683-69203058(-)$1	1	1	36	14.2166
.....(((.(((((......))))))))..)))))	chr20:39709719-39709981(+)$1	1	222	257	12.7735
((((((((((..((......)).))))))))))).	chr1:165728658-165728916(-)$1	1	67	102	18.6684
(.(((((.(((..(......)..))).))))).))	chr22:40354372-40354641(+)$1	1	227	262	13.4411
((((((((((.(((......))).))...))))).	chr20:52185116-52185375(-)$1	1	94	129	13.8399
((((.(...(.(((.....))).)...).))))).	chr1:52305801-52306076(-)$1	1	73	108	13.0610
(((((((.(.((((....)))).))))))))))).	chr16:10576134-10576432(+)$1	1	204	239	13.2394
...(((.(((..(((....))).)))))))))...	chr7:148514879-148515161(-)$1	1	77	112	11.4123
(((((((((((((((...)))))))))))))))).	chr5:95099111-95099398(+)$1	1	211	246	14.5395
(((((((.....((......))....))).)))))	chr12:401895-402292(-)$1	1	341	376	14.4240
(((((((.(((.(......))))))))))))))).	chr15:44107043-44107297(-)$1	1	16	51	17.4725
(((..(((((((((......))))))))).)))))	chr18:13124759-13125100(+)$1	1	17	52	14.4847
(.(((((.((.((.(......).)).)).))))).	chr10:70545839-70546076(+)$1	1	8	43	12.2073
(((.(((.((((((......)))))).))).))).	chr6:24785823-24786170(+)$1	1	295	330	13.0768
((((((((((((((......)))).))))))))))	chr8:101930952-101931210(-)$1	1	133	168	17.5017
.(.(((.....(((......)))..))).)..)))	chr11:65267030-65267234(+)$1	1	27	62	14.8627
((.(((((((((((......))))))))))).)).	chr9:131456819-131457021(+)$1	1	85	120	16.5685
((..(..(((((.(......).)))))..)...))	chr1:42642158-42642448(-)$1	1	161	196	14.6122
(.((((..(((.((......)).)))..)))).))	chr20:3127083-3127427(-)$1	1	109	144	14.4011
((...((((((.((......)).))))))....))	chr5:56558651-56558974(+)$1	1	263	298	13.9179
((.((((...((((......))))...))))))))	chr1:78409662-78409945(-)$1	1	244	279	13.8264
((...((((((.((......)).))))))..))).	chr22:42024112-42024329(+)$1	1	128	163	13.9094
.((((((((((((........))).))))))))).	chr2:54091932-54092216(-)$1	1	100	135	11.6333
(....(((((((((.((...)).)))))))))..)	chr9:139734671-139734912(+)$1	1	15	50	11.5559
(((((((((.(.(((....))).)))))))))))(	chr10:65132334-65132644(-)$1	1	147	182	14.2306
((....(((((..(......)..)))))..)))).	chr16:89350343-89350669(-)$1	1	39	74	12.6497
(((((((....(((......)))...)))))))))	chr9:131456077-131456288(+)$1	1	88	123	19.3342
.((((.(.((..((......)).)).)))))))).	chr7:11022555-11022818(+)$1	1	170	205	13.6070
.((((.((..((((......))))..))))))...	chr10:70525540-70525759(+)$1	1	142	177	13.2528
((((.....(((((......)))))))))))))))	chr11:77336691-77336964(-)$1	1	10	45	15.6598
((((((((((((((....)))).))))))))))..	chr21:34948975-34949227(+)$1	1	166	201	12.1862
(((((((....(((......)))...)))))))))	chr9:131456113-131456340(+)$1	1	52	87	19.3342
.(.(((.....(((......)))..))).)..)))	chr11:65267027-65267230(+)$1	1	30	65	14.8627
(((.((((..((((......)))))))).))))))	chr7:150841057-150841326(+)$1	1	190	225	13.3081
((.(((..((((((......))))))..)))))).	chr2:128255637-128255914(-)$1	1	48	83	13.5903
((.((....((.((......)).))...)))))).	chr1:186315208-186315469(-)$1	1	180	215	14.0528
(((((((((..(((.....))).)))))))))...	chr14:39651274-39651530(+)$1	1	27	62	11.2107
((((.((....(((......)))...)).))))))	chr19:5600095-5600365(-)$1	1	72	107	14.3666
)))(((((.(((.(......)))).))))).((((	chr4:6709697-6710060(-)$1	1	84	119	13.0532

#PSSM
= : 0.25	d : 0.20	b : 0.09	e : 0.05	f : 0.05	c : 0.05	$ : 0.03	: : 0.03	" : 0.03	i : 0.03	! : 0.03	[ : 0.03	g : 0.03	h : 0.01	# : 0.01	
= : 0.27	d : 0.23	i : 0.05	b : 0.05	[ : 0.05	c : 0.05	: : 0.03	e : 0.03	a : 0.03	f : 0.03	g : 0.03	! : 0.01	$ : 0.01	" : 0.01	h : 0.01	# : 0.01	
= : 0.25	d : 0.18	[ : 0.10	" : 0.09	e : 0.07	i : 0.05	: : 0.03	! : 0.03	# : 0.03	g : 0.03	] : 0.01	$ : 0.01	h : 0.01	c : 0.01	f : 0.01	
= : 0.30	d : 0.14	c : 0.10	e : 0.10	" : 0.09	i : 0.05	[ : 0.05	! : 0.03	# : 0.03	$ : 0.01	b : 0.01	f : 0.01	
= : 0.29	c : 0.14	d : 0.12	" : 0.09	e : 0.07	[ : 0.05	i : 0.05	! : 0.03	b : 0.03	$ : 0.03	# : 0.03	a : 0.01	
= : 0.29	c : 0.18	i : 0.09	d : 0.07	e : 0.07	b : 0.05	[ : 0.05	a : 0.03	! : 0.03	f : 0.03	# : 0.03	" : 0.01	$ : 0.01	
= : 0.29	e : 0.10	" : 0.09	i : 0.09	b : 0.07	d : 0.07	c : 0.07	$ : 0.05	! : 0.05	f : 0.03	[ : 0.01	a : 0.01	# : 0.01	
= : 0.21	" : 0.12	[ : 0.10	e : 0.09	i : 0.09	$ : 0.07	# : 0.07	c : 0.05	d : 0.03	b : 0.03	! : 0.03	f : 0.03	g : 0.01	
= : 0.21	" : 0.14	i : 0.09	c : 0.07	$ : 0.07	f : 0.07	# : 0.07	e : 0.05	! : 0.05	b : 0.05	[ : 0.03	d : 0.01	g : 0.01	a : 0.01	
= : 0.18	e : 0.10	! : 0.09	b : 0.09	c : 0.09	" : 0.07	f : 0.07	a : 0.05	$ : 0.05	i : 0.05	# : 0.05	[ : 0.03	d : 0.01	g : 0.01	
d : 0.14	! : 0.14	= : 0.10	e : 0.10	c : 0.09	[ : 0.07	f : 0.07	$ : 0.05	# : 0.05	" : 0.03	b : 0.03	i : 0.03	g : 0.01	a : 0.01	
c : 0.23	d : 0.16	! : 0.16	[ : 0.12	= : 0.09	e : 0.07	i : 0.03	f : 0.03	" : 0.01	g : 0.01	$ : 0.01	b : 0.01	
c : 0.25	b : 0.23	d : 0.16	= : 0.07	e : 0.05	! : 0.05	i : 0.03	f : 0.03	[ : 0.03	q : 0.01	g : 0.01	a : 0.01	
c : 0.23	b : 0.21	d : 0.16	a : 0.09	e : 0.05	= : 0.05	q : 0.03	i : 0.03	f : 0.03	s : 0.01	g : 0.01	o : 0.01	[ : 0.01	
o : 0.70	q : 0.05	n : 0.05	m : 0.03	c : 0.03	s : 0.01	d : 0.01	r : 0.01	= : 0.01	a : 0.01	[ : 0.01	
o : 0.72	n : 0.07	m : 0.07	q : 0.05	s : 0.01	r : 0.01	l : 0.01	b : 0.01	
o : 0.72	n : 0.07	m : 0.07	q : 0.05	s : 0.01	r : 0.01	l : 0.01	b : 0.01	
o : 0.72	n : 0.07	m : 0.07	q : 0.05	l : 0.03	s : 0.01	r : 0.01	
o : 0.72	n : 0.07	q : 0.05	d : 0.03	m : 0.03	s : 0.01	r : 0.01	= : 0.01	l : 0.01	
o : 0.70	c : 0.09	q : 0.05	d : 0.03	s : 0.01	n : 0.01	r : 0.01	= : 0.01	a : 0.01	l : 0.01	
b : 0.23	c : 0.21	d : 0.16	a : 0.09	= : 0.07	e : 0.05	q : 0.03	f : 0.03	s : 0.01	r : 0.01	g : 0.01	i : 0.01	o : 0.01	
c : 0.25	b : 0.23	d : 0.16	= : 0.07	e : 0.05	2 : 0.05	f : 0.03	s : 0.01	q : 0.01	r : 0.01	g : 0.01	i : 0.01	a : 0.01	] : 0.01	
] : 0.29	c : 0.18	d : 0.14	2 : 0.09	= : 0.07	e : 0.07	f : 0.03	s : 0.01	3 : 0.01	r : 0.01	g : 0.01	4 : 0.01	i : 0.01	
= : 0.16	d : 0.14	c : 0.12	e : 0.10	2 : 0.07	3 : 0.07	b : 0.07	f : 0.07	a : 0.05	i : 0.05	g : 0.01	] : 0.01	4 : 0.01	
= : 0.20	e : 0.10	3 : 0.10	c : 0.09	2 : 0.09	b : 0.09	] : 0.07	f : 0.07	i : 0.05	a : 0.03	d : 0.03	g : 0.01	4 : 0.01	
= : 0.25	3 : 0.16	c : 0.12	e : 0.07	i : 0.07	f : 0.07	] : 0.05	2 : 0.05	b : 0.03	d : 0.03	> : 0.01	g : 0.01	4 : 0.01	
= : 0.30	3 : 0.14	c : 0.10	i : 0.09	b : 0.07	e : 0.07	2 : 0.05	] : 0.03	f : 0.03	> : 0.01	g : 0.01	a : 0.01	d : 0.01	
= : 0.30	3 : 0.12	c : 0.12	e : 0.09	i : 0.09	2 : 0.07	b : 0.05	d : 0.05	f : 0.03	> : 0.01	a : 0.01	
= : 0.30	c : 0.12	] : 0.10	d : 0.09	i : 0.09	2 : 0.07	3 : 0.05	e : 0.05	b : 0.03	f : 0.03	> : 0.01	
= : 0.30	e : 0.10	c : 0.09	d : 0.09	2 : 0.07	i : 0.07	b : 0.05	a : 0.05	3 : 0.03	] : 0.03	> : 0.01	4 : 0.01	g : 0.01	f : 0.01	
= : 0.30	d : 0.16	e : 0.10	c : 0.07	i : 0.07	2 : 0.05	3 : 0.03	] : 0.03	g : 0.03	> : 0.01	b : 0.01	h : 0.01	4 : 0.01	f : 0.01	: : 0.01	
= : 0.25	d : 0.18	i : 0.10	e : 0.10	c : 0.09	2 : 0.07	3 : 0.03	g : 0.03	f : 0.03	> : 0.01	h : 0.01	] : 0.01	4 : 0.01	
= : 0.25	d : 0.12	e : 0.10	i : 0.07	c : 0.07	2 : 0.05	] : 0.05	3 : 0.05	b : 0.03	g : 0.03	f : 0.03	> : 0.01	[ : 0.01	h : 0.01	4 : 0.01	: : 0.01	
= : 0.23	d : 0.20	e : 0.10	b : 0.09	i : 0.07	c : 0.07	2 : 0.03	g : 0.03	3 : 0.03	f : 0.03	> : 0.01	h : 0.01	7 : 0.01	: : 0.01	
: : 0.14	d : 0.12	= : 0.12	] : 0.12	e : 0.07	i : 0.05	b : 0.05	3 : 0.05	2 : 0.03	g : 0.03	f : 0.03	> : 0.01	4 : 0.01	5 : 0.01	h : 0.01	8 : 0.01	c : 0.01	7 : 0.01	

#score	771.9819585812819
#seq	55
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_transcript_m1_run2.txt

#BEAR
####ggggggg[ccc[cccooooooccc]ccc]ggggggg	chr17:7476822-7477090(+)$1	268	110	150	17.8828
bb[a==========ddddbbmmmmbb]dddd333======	chr7:5569719-5569959(-)$1	240	152	192	16.0348
gggg[=============qqqqqqqq=============]	chr7:111202244-111202491(-)$1	247	21	61	16.9646
:::iiiiiiiii!!ddddoooooodddd333iiiiiiiii	chr14:105912746-105913013(+)$1	267	96	136	15.5965
a####ggggggg[a!!ddddllldddd4444a]ggggggg	chr13:24153309-24153621(+)$1	312	121	161	16.2607
======!!ccc!!bbddddnnnnndddd]bb22ccc====	chr17:39845716-39845949(+)$1	233	122	162	16.0937
==!!ggggggg[cccccc[aooooooa]ccc]ccc]gggg	chr19:1253051-1253296(+)$1	245	181	221	16.5806
!!ggggggg==========nnnnn==========]ggggg	chr20:40246335-40246555(-)$1	220	5	45	20.8635
============[bb[cccnnnnncccbb===========	chr1:167191008-167191256(+)$1	248	133	173	20.8734
b:iiiiiiiii[bb[bb[annnnna]bb]bbiiiiiiiii	chr22:50355767-50356028(+)$1	261	66	106	16.5716
cceeeee!!cccgggggggnnnnnggggggg]ccc333ee	chr14:21565980-21566250(-)$1	270	184	224	14.7817
gg::bb[=============mmmm=============]bb	chr7:101459906-101460170(+)$1	264	71	111	15.7750
iiiiiiii[ccc!!eeeeellleeeee4444ccc]iiiii	chr1:110169640-110169927(+)$1	287	36	76	14.9427
"""==========####cccmmmmccc4444=========	chr19:42751653-42751886(-)$1	233	129	169	20.0062
!!ggggggg!!dddd[bboooooobbdddd]gggggggee	chr17:79958093-79958366(+)$1	273	57	97	15.2455
bb!!a=========="""annnnna22==========]a2	chr11:17035330-17035602(-)$1	272	224	264	20.5934
ccc!!gggggggccc[cccnnnnnccc]ccc]ggggggg2	chr5:179248184-179248420(+)$1	236	124	164	18.3891
[a[gggggggbb[bb[bboooooobbbb]bb]ggggggg]	chr1:154976287-154976548(+)$1	261	101	141	15.6264
$$$$$============[ccclllccc]============	chr19:4065265-4065527(-)$1	262	189	229	19.2535
ggggggg[a!!eeeee[bbnnnnnbb]eeeee]agggggg	chr13:99228465-99228719(-)$1	254	11	51	14.9950
eeee"""ggggggg[ddddnnnnndddd]ggggggg22ee	chr11:68080409-68080672(+)$1	263	95	135	15.1442
:a[a[===========!!aooooooa22===========]	chr17:79859888-79860161(-)$1	273	195	235	19.9196
]cccccc===========[bblllbb]===========22	chr10:14645695-14646028(-)$1	333	113	153	17.1352
=========!!dddd[cccmmmmcccdddd333=======	chr14:23398001-23398252(-)$1	251	207	247	17.0924
hhhhhh[ccc!!ccc[cccnnnnnccc]ccc]ccchhhhh	chr20:62371148-62371379(+)$1	231	106	146	15.3156
a!!==========[a[cccpppppppccc]a]========	chr2:242211593-242211857(-)$1	264	197	237	16.2548
[dddd[iiiiiiiii[eeeeellleeeeeiiiiiiiiidd	chr3:98451765-98452033(+)$1	268	162	202	15.0209
"""=============[bbnnnnnbb]=============	chr1:6675078-6675386(+)$1	308	60	100	21.8666
a==========####ddddnnnnndddd==========::	chr1:8938438-8938683(-)$1	245	197	237	17.8507
:bb[===========[bbmmmmbb===========]bbdd	chr9:96929266-96929521(+)$1	255	42	82	14.5991
bb[===========!!cccmmmmccc===========bbf	chr1:203764849-203765096(+)$1	247	128	168	18.8432
============####ddddmmmmdddd333=========	chr21:46708240-46708569(+)$1	329	164	204	18.6274
ee####ggggggg"""cccmmmmccc4444ggggggg333	chr11:82869276-82869514(+)$1	238	144	184	16.4868
dddbb[ggggggg"""cccmmmmccc333ggggggg]bb2	chrX:20284811-20285050(-)$1	239	194	234	14.9103
dd:gggggggiiiiiiiiillliiiiiiiii333gggggg	chr16:69166620-69166896(+)$1	276	80	120	15.7606
f[a[a[a[ggggggg[cccnnnnnccc333ggggggg]aa	chr7:105028477-105028709(-)$1	232	68	108	18.5028
iiiiiiii!!ccc"""cccmmmmccc333ccc333iiiii	chr12:122237461-122237710(-)$1	249	196	236	17.4905
[ggggggg####cccrrrrrrrrrccc4444ggggggg==	chr17:79653854-79654121(+)$1	267	122	162	15.0303
cc!!===========[cccnnnnnccc]===========]	chr22:16156281-16156539(-)$1	258	92	132	22.6117
hhhhh==========!!bbnnnnnbb22==========cc	chr6:36646693-36646927(+)$1	234	50	90	19.5434
[ffffff####ccc!!cccnnnnnccccccffffff]ccc	chr6:167412040-167412314(-)$1	274	69	109	14.6751
c!!=========="""ddddmmmmdddd]==========c	chr2:128180658-128180880(+)$1	222	140	180	19.0323
[a!!ccc===========oooooo===========]ccc2	chr6:163836356-163836621(+)$1	265	55	95	19.6493
cc[ggggggg!!dddd[bbnnnnnbb]dddd]gggggggc	chr13:45914973-45915237(-)$1	264	151	191	16.1162
!gggggggiiiiiiiii[annnnna]iiiiiiiii333gg	chr7:1577316-1577579(+)$1	263	112	152	19.5280
hhhhh[a[ccc[gggggggnnnnnggggggg]ccc]a]hh	chr7:2680921-2681199(+)$1	278	46	86	15.0953
"""ccc[a[==========nnnnn==========]a]ccc	chr19:928219-928458(+)$1	239	81	121	19.6982
========####gggggggammmma]ggggggg333====	chr20:40246265-40246507(-)$1	242	86	126	16.9445
:a[============[bb[aooooooa]bb22========	chr22:37964458-37964720(+)$1	262	63	103	18.1451
fffggggggg"""bb[cccooooooccc]bb]ggggggg]	chr14:103571141-103571424(+)$1	283	38	78	16.8156
iiiiiiiii[gggggggrrrrrrrrrggggggg]iiiiii	chr8:145687815-145688067(-)$1	252	122	162	16.0051

#otherMatches

#Seq PSSM
AGACGCCGCCGGGUGGUCGAGGGAGCGAGCACAUGGUGGC	chr17:7476822-7477090(+)$1	268	110	150	17.8828
UUGCGCGUGCGCGCUGGUCCUUUGGGCGCUAACUGCGUGC	chr7:5569719-5569959(-)$1	240	152	192	16.0348
GCUGGCAGGGGUCGGCGGGCGCGUAGCCGCCGACCCUUGG	chr7:111202244-111202491(-)$1	247	21	61	16.9646
AUCUUCUGCCCCGUCCCAGCGCUGUGGGUGAGGGGCAGGA	chr14:105912746-105913013(+)$1	267	96	136	15.5965
AGGGCGGGGCCCGGGUGGGCGGUGCCCUGAGCGGGGCUCC	chr13:24153309-24153621(+)$1	312	121	161	16.2607
CCGAGCCUGGGGAAGCUGGCCGUCCCGGACUGACCUGCUC	chr17:39845716-39845949(+)$1	233	122	162	16.0937
GGCCGGGCAGGCUGGGCCGCAGGGUGGGGGCUUCACCCUG	chr19:1253051-1253296(+)$1	245	181	221	16.5806
cuggggcggggcgggGGUGACCGCUAUUCCCGCCGCCGCC	chr20:40246335-40246555(-)$1	220	5	45	20.8635
cccggccggcggUCGGCAGCCCCUUUGCGUUGUCGGCCGG	chr1:167191008-167191256(+)$1	248	133	173	20.8734
CUGGAGGCCCCCGCGGCGCGGUUGGAGUGGCGGGGCCUCC	chr22:50355767-50356028(+)$1	261	66	106	16.5716
ACCCCCCAACCCCCGGCCCAGGUAGGGCUGGUGGGGGAGG	chr14:21565980-21566250(-)$1	270	184	224	14.7817
GGAGCUGGGGCUGGUGGCGCUGUGGUGCCGCCGGCUCGGG	chr7:101459906-101460170(+)$1	264	71	111	15.7750
GGCAGGAGCUGUCUGACCUACUGGGUCUUCAACAUCUCUU	chr1:110169640-110169927(+)$1	287	36	76	14.9427
GAAUGUAUUCAAAACAAUAAAACUUUGGACCUUUGGAUGC	chr19:42751653-42751886(-)$1	233	129	169	20.0062
AGUAGUGCCCGCCCGUGCUCGCCCGUCGGGAGGCGCUGUU	chr17:79958093-79958366(+)$1	273	57	97	15.2455
GUUUGGCGGCCUCCGAGAGGAAGGCGGUGGGGGCCGCACC	chr11:17035330-17035602(-)$1	272	224	264	20.5934
GGGAGCCGGCCUGGUGACUGGAGUGGUGACCAAGGCCGGG	chr5:179248184-179248420(+)$1	236	124	164	18.3891
GCGUGGGCAGCGGGUUGUGCCCGGACACGUGCCUGCCCAG	chr1:154976287-154976548(+)$1	261	101	141	15.6264
UCCUGCCCCCGCCCGGGCCUGACUCAGCCCCGGGUGGGGG	chr19:4065265-4065527(-)$1	262	189	229	19.2535
CUUCCGGAGCUGCAGGCCCUGGGUGGCCCUGUCCCCGGGA	chr13:99228465-99228719(-)$1	254	11	51	14.9950
AGGAGGGCGCCCGCUCCGCCAGGUGCGGCGCGGGCGGGUC	chr11:68080409-68080672(+)$1	263	95	135	15.1442
GCGGGCGAGCGCUGGAGGCGCGCAAGGAUCUGGCGCUUGG	chr17:79859888-79860161(-)$1	273	195	235	19.9196
ACCCGGCGCGGUGUGCACUGCCUGGCCGUGUGCGCCGUAU	chr10:14645695-14646028(-)$1	333	113	153	17.1352
UUCUCCUUACUCAUAUGUCCCAUGGCUGUGUUUUAGGGAG	chr14:23398001-23398252(-)$1	251	207	247	17.0924
gccggccggccauggagcgccccccgccccgcgccgccgg	chr20:62371148-62371379(+)$1	231	106	146	15.3156
GGGGCGGGGGUCUGGGCGCAGACCGGGCGGCGGGGCCCCC	chr2:242211593-242211857(-)$1	264	197	237	16.2548
GACCCUCCGGCUUUGCAGCCUCUGAGGCUCAGGGUUGGGG	chr3:98451765-98452033(+)$1	268	162	202	15.0209
GCGGGAGGGCGGGUGGGGGCCGCUCCGCCAUCUGCUUUCC	chr1:6675078-6675386(+)$1	308	60	100	21.8666
GGCGCCCCCGCUCACCCCGAGGCCCGGGGCGGGGGCGCAA	chr1:8938438-8938683(-)$1	245	197	237	17.8507
AGCAGCUGCUGCGGCUGGAGGUCCGCUGCGGCAGCCGUCC	chr9:96929266-96929521(+)$1	255	42	82	14.5991
AGAGGGCGAGGGGAGUGGCAGCGGCCUCCCCUCGCCCCUG	chr1:203764849-203765096(+)$1	247	128	168	18.8432
CUGGGUGCCCCCAACCCUGGAGCCCCGGCGAGGGGGCACC	chr21:46708240-46708569(+)$1	329	164	204	18.6274
CUGGCCCAGAGGGUAACAAGUACUUGCAGUUUCUCUGAAA	chr11:82869276-82869514(+)$1	238	144	184	16.4868
cgccgccgccgccgcugccgUGGGGCUCgggcggcgacgg	chrX:20284811-20285050(-)$1	239	194	234	14.9103
UUGUCCCGAGGCGGGGUGGGGGCUACUCUGUAGACUCGGG	chr16:69166620-69166896(+)$1	276	80	120	15.7606
GAGUGUGCGGGAGGGCGUGUGUCUCGCCUCCCCUUCCUCC	chr7:105028477-105028709(-)$1	232	68	108	18.5028
GCAUACGAGAGGAUCCACUUGCAAGUAUUUCCCAGUUGUG	chr12:122237461-122237710(-)$1	249	196	236	17.4905
AGGAGGGGCCCUGCCCUGACCACUGGCCCAACCCUUCCCU	chr17:79653854-79654121(+)$1	267	122	162	15.0303
AGCUGCCUGGGGUCGGCCCGGCGGGGGGUGACCCCGGGCC	chr22:16156281-16156539(-)$1	258	92	132	22.6117
GCUCGGCUUGCGCACACGGUGUCUCUAAGUGCGCGGGUGA	chr6:36646693-36646927(+)$1	234	50	90	19.5434
ACGGCCUCCGAGGCUAACCGGAAAGGUGCCAGGCCGAGGU	chr6:167412040-167412314(-)$1	274	69	109	14.6751
gUUGGGGGCGCGGCACCAGCACCAGCUGCCCGCGCCCUCC	chr2:128180658-128180880(+)$1	222	140	180	19.0323
gcggccccUUUCCCCGCUUGGGAUGGUGGGGAGGGCGGGA	chr6:163836356-163836621(+)$1	265	55	95	19.6493
GGACGCCGGCGGUCUUAGCCGAGCGCGGAGGGGUCGGUGC	chr13:45914973-45915237(-)$1	264	151	191	16.1162
GCUCCCUGGCCCAGGGUGUGGGGAGGGUCCUGGGCUGGCA	chr7:1577316-1577579(+)$1	263	112	152	19.5280
ACGGUGGGAGGGGGCAUCCCCCAUGGAUGCCGUCUGUGGC	chr7:2680921-2681199(+)$1	278	46	86	15.0953
GGAGGUGUGGCCUGGGCUAGGGGGUGGCUCGGGUGGGACC	chr19:928219-928458(+)$1	239	81	121	19.6982
GGCGGGGGCCCCUGCGCGGCCUCGGAUCGCGCACCCCCUC	chr20:40246265-40246507(-)$1	242	86	126	16.9445
ACAGCUGGGUUGGGCCCAGUGGCUGAGGUGAAGUCCAGCC	chr22:37964458-37964720(+)$1	262	63	103	18.1451
GGACGCAUCCUCAGUAGGGGAGCGACCUGGCCGGGUGCGC	chr14:103571141-103571424(+)$1	283	38	78	16.8156
gcccggggcggccgccgggcaggcggcggcggcggcucug	chr8:145687815-145688067(-)$1	252	122	162	16.0051

#DB
....(((((((.(((.(((......))).))).)))))))	chr17:7476822-7477090(+)$1	1	110	150	17.8828
((.(((((((((((((((((....)).))))...))))))	chr7:5569719-5569959(-)$1	1	152	192	16.0348
((((.(((((((((((((........))))))))))))).	chr7:111202244-111202491(-)$1	1	21	61	16.9646
...(((((((((..((((......))))...)))))))))	chr14:105912746-105913013(+)$1	1	96	136	15.5965
(....(((((((.(..((((...))))....).)))))))	chr13:24153309-24153621(+)$1	1	121	161	16.2607
((((((..(((..((((((.....)))).))..)))))))	chr17:39845716-39845949(+)$1	1	122	162	16.0937
((..(((((((.((((((.(......).))).))).))))	chr19:1253051-1253296(+)$1	1	181	221	16.5806
..(((((((((((((((((.....)))))))))).)))))	chr20:40246335-40246555(-)$1	1	5	45	20.8635
((((((((((((.((.(((.....))))))))))))))))	chr1:167191008-167191256(+)$1	1	133	173	20.8734
).(((((((((.((.((.(.....).)).)))))))))))	chr22:50355767-50356028(+)$1	1	66	106	16.5716
))(((((..((((((((((.....))))))).)))...))	chr14:21565980-21566250(-)$1	1	184	224	14.7817
))..((.(((((((((((((....))))))))))))).))	chr7:101459906-101460170(+)$1	1	71	111	15.7750
((((((((.(((..(((((...)))))....))).)))))	chr1:110169640-110169927(+)$1	1	36	76	14.9427
...((((((((((....(((....)))....)))))))))	chr19:42751653-42751886(-)$1	1	129	169	20.0062
..(((((((..((((.((......)))))).)))))))))	chr17:79958093-79958366(+)$1	1	57	97	15.2455
((..(((((((((((...(.....)..)))))))))).).	chr11:17035330-17035602(-)$1	1	224	264	20.5934
(((..((((((((((.(((.....))).))).))))))).	chr5:179248184-179248420(+)$1	1	124	164	18.3891
.(.(((((((((.((.((......)))).)).))))))).	chr1:154976287-154976548(+)$1	1	101	141	15.6264
.....((((((((((((.(((...))).))))))))))))	chr19:4065265-4065527(-)$1	1	189	229	19.2535
(((((((.(..(((((.((.....)).))))).)))))))	chr13:99228465-99228719(-)$1	1	11	51	14.9950
((((...(((((((.((((.....)))).)))))))..))	chr11:68080409-68080672(+)$1	1	95	135	15.1442
.(.(.(((((((((((..(......)..))))))))))).	chr17:79859888-79860161(-)$1	1	195	235	19.9196
.)))((((((((((((((.((...)).)))))))))))..	chr10:14645695-14646028(-)$1	1	113	153	17.1352
(((((((((..((((.(((....)))))))...)))))))	chr14:23398001-23398252(-)$1	1	207	247	17.0924
((((((.(((..(((.(((.....))).))).))))))))	chr20:62371148-62371379(+)$1	1	106	146	15.3156
(..((((((((((.(.(((.......))).).))))))))	chr2:242211593-242211857(-)$1	1	197	237	16.2548
.((((.(((((((((.(((((...))))))))))))))))	chr3:98451765-98452033(+)$1	1	162	202	15.0209
...(((((((((((((.((.....)).)))))))))))))	chr1:6675078-6675386(+)$1	1	60	100	21.8666
)((((((((((....((((.....))))))))))))))..	chr1:8938438-8938683(-)$1	1	197	237	17.8507
.((.(((((((((((.((....))))))))))))).))((	chr9:96929266-96929521(+)$1	1	42	82	14.5991
((.(((((((((((..(((....))))))))))))))))(	chr1:203764849-203765096(+)$1	1	128	168	18.8432
((((((((((((....((((....))))...)))))))))	chr21:46708240-46708569(+)$1	1	164	204	18.6274
((....(((((((...(((....)))....)))))))...	chr11:82869276-82869514(+)$1	1	144	184	16.4868
(((((.(((((((...(((....)))...))))))).)).	chrX:20284811-20285050(-)$1	1	194	234	14.9103
)).((((((((((((((((...)))))))))...))))))	chr16:69166620-69166896(+)$1	1	80	120	15.7606
(.(.(.(.(((((((.(((.....)))...))))))).))	chr7:105028477-105028709(-)$1	1	68	108	18.5028
((((((((..(((...(((....)))...)))...)))))	chr12:122237461-122237710(-)$1	1	196	236	17.4905
.(((((((....(((.........)))....)))))))))	chr17:79653854-79654121(+)$1	1	122	162	15.0303
((..(((((((((((.(((.....))).))))))))))).	chr22:16156281-16156539(-)$1	1	92	132	22.6117
)))))((((((((((..((.....))..))))))))))((	chr6:36646693-36646927(+)$1	1	50	90	19.5434
.((((((....(((..(((.....)))))))))))).)))	chr6:167412040-167412314(-)$1	1	69	109	14.6751
(..((((((((((...((((....)))).)))))))))))	chr2:128180658-128180880(+)$1	1	140	180	19.0323
.(..((((((((((((((......))))))))))).))).	chr6:163836356-163836621(+)$1	1	55	95	19.6493
((.(((((((..((((.((.....)).)))).))))))))	chr13:45914973-45915237(-)$1	1	151	191	16.1162
.((((((((((((((((.(.....).)))))))))...))	chr7:1577316-1577579(+)$1	1	112	152	19.5280
(((((.(.(((.(((((((.....))))))).))).).))	chr7:2680921-2681199(+)$1	1	46	86	15.0953
...(((.(.((((((((((.....)))))))))).).)))	chr19:928219-928458(+)$1	1	81	121	19.6982
((((((((....((((((((....).)))))))...))))	chr20:40246265-40246507(-)$1	1	86	126	16.9445
.(.((((((((((((.((.(......).))..))))))))	chr22:37964458-37964720(+)$1	1	63	103	18.1451
((((((((((...((.(((......))).)).))))))).	chr14:103571141-103571424(+)$1	1	38	78	16.8156
(((((((((.(((((((.........))))))).))))))	chr8:145687815-145688067(-)$1	1	122	162	16.0051

#PSSM
= : 0.11	c : 0.09	[ : 0.09	b : 0.07	: : 0.07	g : 0.05	a : 0.05	! : 0.05	i : 0.05	" : 0.05	h : 0.05	e : 0.03	d : 0.03	f : 0.03	# : 0.01	$ : 0.01	] : 0.01	
= : 0.13	g : 0.09	c : 0.09	b : 0.07	! : 0.07	a : 0.07	i : 0.05	" : 0.05	h : 0.05	d : 0.05	# : 0.03	: : 0.03	e : 0.03	f : 0.03	$ : 0.01	[ : 0.01	
[ : 0.11	g : 0.11	= : 0.11	! : 0.11	i : 0.07	# : 0.05	: : 0.05	" : 0.05	h : 0.05	e : 0.03	c : 0.03	d : 0.03	f : 0.03	$ : 0.01	b : 0.01	a : 0.01	
= : 0.23	g : 0.19	i : 0.09	! : 0.09	# : 0.05	h : 0.05	a : 0.03	e : 0.03	c : 0.03	[ : 0.03	: : 0.01	$ : 0.01	d : 0.01	b : 0.01	f : 0.01	
= : 0.29	g : 0.21	i : 0.09	c : 0.05	h : 0.05	[ : 0.03	# : 0.03	b : 0.03	a : 0.03	e : 0.01	! : 0.01	$ : 0.01	" : 0.01	d : 0.01	f : 0.01	
= : 0.39	g : 0.25	i : 0.09	[ : 0.07	c : 0.05	e : 0.01	b : 0.01	" : 0.01	h : 0.01	# : 0.01	f : 0.01	
= : 0.37	g : 0.29	i : 0.11	[ : 0.05	c : 0.03	a : 0.03	! : 0.01	e : 0.01	" : 0.01	f : 0.01	
= : 0.43	g : 0.29	i : 0.11	[ : 0.05	! : 0.03	c : 0.01	# : 0.01	a : 0.01	
= : 0.41	g : 0.27	i : 0.09	c : 0.05	# : 0.05	! : 0.03	[ : 0.03	a : 0.01	
= : 0.43	g : 0.23	c : 0.09	i : 0.07	! : 0.07	# : 0.05	[ : 0.01	
= : 0.43	g : 0.17	i : 0.09	c : 0.09	! : 0.09	# : 0.05	b : 0.01	" : 0.01	
= : 0.41	g : 0.13	[ : 0.07	i : 0.07	c : 0.07	! : 0.05	# : 0.05	d : 0.03	b : 0.01	e : 0.01	" : 0.01	
= : 0.37	g : 0.15	c : 0.13	! : 0.05	[ : 0.05	d : 0.05	i : 0.05	# : 0.03	b : 0.01	e : 0.01	" : 0.01	
= : 0.31	c : 0.11	g : 0.11	b : 0.09	" : 0.07	# : 0.05	d : 0.05	i : 0.05	! : 0.03	a : 0.01	e : 0.01	[ : 0.01	
= : 0.27	c : 0.09	d : 0.09	g : 0.09	b : 0.07	" : 0.07	! : 0.05	# : 0.05	i : 0.05	[ : 0.03	e : 0.03	a : 0.01	
[ : 0.27	= : 0.17	d : 0.11	" : 0.09	! : 0.07	g : 0.07	e : 0.03	# : 0.03	i : 0.03	c : 0.01	b : 0.01	r : 0.01	
c : 0.29	d : 0.15	= : 0.13	b : 0.09	g : 0.07	[ : 0.05	e : 0.03	! : 0.03	i : 0.03	# : 0.01	" : 0.01	r : 0.01	
c : 0.31	d : 0.15	b : 0.15	= : 0.11	[ : 0.05	g : 0.05	e : 0.03	r : 0.03	" : 0.01	! : 0.01	i : 0.01	
c : 0.31	d : 0.11	b : 0.09	o : 0.07	a : 0.07	[ : 0.05	= : 0.05	g : 0.05	e : 0.03	r : 0.03	q : 0.01	m : 0.01	i : 0.01	
n : 0.39	o : 0.13	m : 0.11	d : 0.05	a : 0.05	b : 0.03	l : 0.03	c : 0.03	r : 0.03	q : 0.01	= : 0.01	p : 0.01	e : 0.01	
n : 0.39	m : 0.23	o : 0.17	l : 0.05	r : 0.03	q : 0.01	c : 0.01	b : 0.01	p : 0.01	e : 0.01	
n : 0.39	m : 0.23	o : 0.17	l : 0.11	r : 0.03	q : 0.01	p : 0.01	
n : 0.39	m : 0.21	o : 0.17	l : 0.07	r : 0.03	q : 0.01	e : 0.01	p : 0.01	b : 0.01	i : 0.01	
n : 0.39	o : 0.17	m : 0.11	c : 0.09	l : 0.05	r : 0.03	q : 0.01	d : 0.01	e : 0.01	p : 0.01	b : 0.01	i : 0.01	
c : 0.27	b : 0.15	d : 0.13	o : 0.09	= : 0.09	a : 0.07	g : 0.03	e : 0.03	q : 0.01	p : 0.01	i : 0.01	r : 0.01	
c : 0.31	b : 0.15	d : 0.13	= : 0.09	] : 0.05	o : 0.03	g : 0.03	e : 0.03	q : 0.01	2 : 0.01	a : 0.01	p : 0.01	i : 0.01	r : 0.01	
c : 0.23	d : 0.17	= : 0.13	] : 0.09	g : 0.07	2 : 0.05	a : 0.03	b : 0.03	e : 0.03	3 : 0.03	i : 0.03	4 : 0.01	
d : 0.19	= : 0.19	] : 0.11	4 : 0.09	c : 0.07	g : 0.07	b : 0.05	3 : 0.05	e : 0.03	2 : 0.03	i : 0.03	
= : 0.29	] : 0.13	3 : 0.09	4 : 0.09	c : 0.09	d : 0.07	g : 0.07	b : 0.03	e : 0.03	i : 0.03	
= : 0.33	c : 0.11	g : 0.11	4 : 0.09	b : 0.09	d : 0.07	3 : 0.05	i : 0.05	e : 0.01	] : 0.01	
= : 0.33	g : 0.15	c : 0.09	4 : 0.07	b : 0.07	3 : 0.05	i : 0.05	d : 0.03	] : 0.01	e : 0.01	a : 0.01	f : 0.01	2 : 0.01	
= : 0.37	] : 0.17	g : 0.15	i : 0.07	c : 0.05	3 : 0.05	2 : 0.03	a : 0.01	e : 0.01	f : 0.01	
= : 0.41	g : 0.23	c : 0.09	3 : 0.07	i : 0.07	] : 0.05	2 : 0.01	f : 0.01	
= : 0.43	g : 0.23	c : 0.11	3 : 0.07	i : 0.07	a : 0.01	f : 0.01	] : 0.01	
= : 0.41	g : 0.27	i : 0.09	c : 0.09	] : 0.05	3 : 0.03	f : 0.01	
= : 0.37	g : 0.29	i : 0.11	] : 0.07	3 : 0.05	c : 0.01	h : 0.01	f : 0.01	a : 0.01	
= : 0.41	g : 0.27	i : 0.11	] : 0.05	3 : 0.03	2 : 0.01	h : 0.01	b : 0.01	c : 0.01	a : 0.01	
= : 0.35	g : 0.23	i : 0.11	] : 0.07	3 : 0.05	b : 0.05	c : 0.05	2 : 0.01	h : 0.01	
= : 0.31	g : 0.21	i : 0.09	c : 0.07	e : 0.05	b : 0.05	a : 0.03	h : 0.03	d : 0.03	2 : 0.01	: : 0.01	3 : 0.01	
= : 0.23	g : 0.13	] : 0.09	i : 0.09	2 : 0.09	c : 0.09	e : 0.05	h : 0.03	d : 0.03	b : 0.01	: : 0.01	f : 0.01	3 : 0.01	a : 0.01	

#score	883.0439990725059
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF204UQL_CDC40_UTR_m1_run1.txt

#BEAR
:eeeeeuuuuuuuuuuuueeeee	chr11:2153380-2153601(-)$1	221	150	173	25.3066
======uuuuuuuuuuuu=====	chr11:2152290-2152498(-)$1	208	64	87	22.5512
:eeeeexxxxxxxxxxxxxxxee	chr11:2152741-2152948(-)$1	207	95	118	19.1541
:eeeeeuuuuuuuuuuuueeeee	chr11:2153377-2153580(-)$1	203	129	152	25.3066
::eeeeettttttttttteeeee	chr11:2152564-2152775(-)$1	211	13	36	23.3748
b"""bbuuuuuuuuuuuubb333	chr11:2153209-2153417(-)$1	208	130	153	21.5187
###bbvvvvvvvvvvvvvbb444	chr17:7082310-7082558(-)$1	248	53	76	19.7860
:eeeeeuuuuuuuuuuuueeeee	chr11:2153415-2153622(-)$1	207	171	194	25.3066
::eeeeettttttttttteeeee	chr11:2152651-2152857(-)$1	206	95	118	23.3748
:eeeeexxxxxxxxxxxxxxxee	chr11:2152758-2152965(-)$1	207	112	135	19.1541
:eeeeexxxxxxxxxxxxxxxee	chr11:2152783-2152999(-)$1	216	146	169	19.1541
ee[cccvvvvvvvvvvvvvccc]	chr3:185637074-185637362(-)$1	288	248	271	20.5500
b"""bbuuuuuuuuuuuubb333	chr11:2153190-2153400(-)$1	210	113	136	21.5187
======uuuuuuuuuuuu=====	chr11:2152334-2152542(-)$1	208	108	131	22.5512
ccc[ccctttttttttttccc]c	chr11:2151849-2152075(-)$1	226	91	114	20.5980
::eeeeettttttttttteeeee	chr11:2152639-2152844(-)$1	205	82	105	23.3748
::eeeeettttttttttteeeee	chr11:2152627-2152839(-)$1	212	77	100	23.3748
fff!!attttttttttta]ffff	chr14:23791055-23791278(+)$1	223	117	140	19.6982
::eeeeettttttttttteeeee	chr11:2152595-2152805(-)$1	210	43	66	23.3748
::eeeeettttttttttteeeee	chr11:2152729-2152933(-)$1	204	171	194	23.3748
:eeeeeuuuuuuuuuuuueeeee	chr11:2153347-2153572(-)$1	225	121	144	25.3066
:eeeeexxxxxxxxxxxxxxxee	chr11:2152748-2152958(-)$1	210	105	128	19.1541
======uuuuuuuuuuuu=====	chr11:2152330-2152534(-)$1	204	100	123	22.5512
[bb[bbuuuuuuuuuuuubb]bb	chr11:93465301-93465575(-)$1	274	169	192	20.1581
======uuuuuuuuuuuu=====	chr11:2152370-2152608(-)$1	238	174	197	22.5512
======uuuuuuuuuuuu=====	chr11:2152326-2152530(-)$1	204	96	119	22.5512
:eeeeexxxxxxxxxxxxxxxee	chr11:2152765-2152983(-)$1	218	130	153	19.1541
======uuuuuuuuuuuu=====	chr11:2152281-2152490(-)$1	209	56	79	22.5512
======uuuuuuuuuuuu=====	chr11:2152349-2152561(-)$1	212	127	150	22.5512
[eeeeeuuuuuuuuuuuueeeee	chr1:249151582-249151903(-)$1	321	145	168	25.1834
::eeeeettttttttttteeeee	chr11:2152605-2152812(-)$1	207	50	73	23.3748
ggggwwwwwwwwwwwwwwggggg	chr14:21484914-21485174(-)$1	260	212	235	19.9205
:eeeeeuuuuuuuuuuuueeeee	chr11:2153275-2153493(-)$1	218	42	65	25.3066
bb!!ccctttttttttttccc22	chr19:54970868-54971104(+)$1	236	129	152	20.4823
::eeeeettttttttttteeeee	chr11:2152709-2152913(-)$1	204	151	174	23.3748
:eeeeeuuuuuuuuuuuueeeee	chr11:2153246-2153457(-)$1	211	6	29	25.3066
[eeeeevvvvvvvvvvvvveeee	chr17:74732098-74732358(-)$1	260	21	44	23.6197
::eeeeettttttttttteeeee	chr11:2152661-2152863(-)$1	202	101	124	23.3748
b[eeeeettttttttttteeeee	chr11:2152426-2152628(-)$1	202	4	27	24.0796
:eeeeeuuuuuuuuuuuueeeee	chr11:2153263-2153475(-)$1	212	24	47	25.3066
!eeeeevvvvvvvvvvvvveeee	chr11:2159523-2159738(-)$1	215	148	171	23.7357
::dddduuuuuuuuuuuudddd:	chr8:27529104-27529351(+)$1	247	92	115	20.3359
::eeeeettttttttttteeeee	chr11:2152663-2152869(-)$1	206	107	130	23.3748
:eeeeeuuuuuuuuuuuueeeee	chr11:2153293-2153524(-)$1	231	73	96	25.3066
::eeeeettttttttttteeeee	chr11:2152648-2152851(-)$1	203	89	112	23.3748
======uuuuuuuuuuuu=====	chr11:2152361-2152570(-)$1	209	136	159	22.5512
b"""bbuuuuuuuuuuuubb333	chr11:2153217-2153431(-)$1	214	144	167	21.5187
ffffffuuuuuuuuuuuufffff	chr14:54421088-54421339(-)$1	251	100	123	21.0629
::eeeeettttttttttteeeee	chr11:2152582-2152788(-)$1	206	26	49	23.3748
======uuuuuuuuuuuu=====	chr11:2152298-2152502(-)$1	204	68	91	22.5512
$eeeeettttttttttteeeee4	chr11:2153992-2154200(-)$1	208	92	115	22.8994
::eeeeettttttttttteeeee	chr11:2152624-2152827(-)$1	203	65	88	23.3748
$eeeeettttttttttteeeee4	chr11:2154036-2154243(-)$1	207	135	158	22.8994
:eeeeexxxxxxxxxxxxxxxee	chr11:2152698-2152903(-)$1	205	50	73	19.1541
b[eeeeettttttttttteeeee	chr11:2152428-2152630(-)$1	202	6	29	24.0796
::eeeeettttttttttteeeee	chr11:2152644-2152848(-)$1	204	86	109	23.3748
e[ddddtttttttttttdddd]e	chr2:217069826-217070076(+)$1	250	62	85	19.9224
:eeeeexxxxxxxxxxxxxxxee	chr11:2152722-2152929(-)$1	207	76	99	19.1541
:eeeeexxxxxxxxxxxxxxxee	chr11:2152669-2152876(-)$1	207	23	46	19.1541
iiicccwwwwwwwwwwwwwwccc	chr11:62283977-62284242(-)$1	265	88	111	20.4299
:eeeeeuuuuuuuuuuuueeeee	chr11:2153407-2153615(-)$1	208	164	187	25.3066
!eeeeevvvvvvvvvvvvveeee	chr11:2159497-2159707(-)$1	210	117	140	23.7357
:eeeeewwwwwwwwwwwwwweee	chr5:73925461-73925737(-)$1	276	106	129	23.4302
:eeeeexxxxxxxxxxxxxxxee	chr11:2152694-2152898(-)$1	204	45	68	19.1541
eee[ccctttttttttttccc]e	chr11:2152419-2152622(-)$1	203	4	27	21.4037
::eeeeettttttttttteeeee	chr11:2152612-2152816(-)$1	204	54	77	23.3748
:eeeeexxxxxxxxxxxxxxxee	chr11:2152736-2152940(-)$1	204	87	110	19.1541
:eeeeeuuuuuuuuuuuueeeee	chr11:2153422-2153674(-)$1	252	223	246	25.3066

#otherMatches

#Seq PSSM
AGCAUGAAAACCAAAAUCCAUGC	chr11:2153380-2153601(-)$1	221	150	173	25.3066
ACACCCGUAGGGUGGGCGGGGUG	chr11:2152290-2152498(-)$1	208	64	87	22.5512
acaugcacacacagcacacacgc	chr11:2152741-2152948(-)$1	207	95	118	19.1541
AGCAUGAAAACCAAAAUCCAUGC	chr11:2153377-2153580(-)$1	203	129	152	25.3066
acUCAUGCGCAGCACAUACAUGA	chr11:2152564-2152775(-)$1	211	13	36	23.3748
cacagcacacacacaaacgcaca	chr11:2153209-2153417(-)$1	208	130	153	21.5187
AAAUGGGAAGAGAGGUGGCGGGA	chr17:7082310-7082558(-)$1	248	53	76	19.7860
AGCAUGAAAACCAAAAUCCAUGC	chr11:2153415-2153622(-)$1	207	171	194	25.3066
acUCAUGCGCAGCACAUACAUGA	chr11:2152651-2152857(-)$1	206	95	118	23.3748
acaugcacacacagcacacacgc	chr11:2152758-2152965(-)$1	207	112	135	19.1541
acaugcacacacagcacacacgc	chr11:2152783-2152999(-)$1	216	146	169	19.1541
UUUGAAGCUCAUGAAAAUAUUCU	chr3:185637074-185637362(-)$1	288	248	271	20.5500
cacagcacacacacaaacgcaca	chr11:2153190-2153400(-)$1	210	113	136	21.5187
ACACCCGUAGGGUGGGCGGGGUG	chr11:2152334-2152542(-)$1	208	108	131	22.5512
UCUGGGGUAGGAAGUGGUCCCGG	chr11:2151849-2152075(-)$1	226	91	114	20.5980
acUCAUGCGCAGCACAUACAUGA	chr11:2152639-2152844(-)$1	205	82	105	23.3748
acUCAUGCGCAGCACAUACAUGA	chr11:2152627-2152839(-)$1	212	77	100	23.3748
GUCAGCGAUCACUACAAGGGGCC	chr14:23791055-23791278(+)$1	223	117	140	19.6982
acUCAUGCGCAGCACAUACAUGA	chr11:2152595-2152805(-)$1	210	43	66	23.3748
acUCAUGCGCAGCACAUACAUGA	chr11:2152729-2152933(-)$1	204	171	194	23.3748
AGCAUGAAAACCAAAAUCCAUGC	chr11:2153347-2153572(-)$1	225	121	144	25.3066
acaugcacacacagcacacacgc	chr11:2152748-2152958(-)$1	210	105	128	19.1541
ACACCCGUAGGGUGGGCGGGGUG	chr11:2152330-2152534(-)$1	204	100	123	22.5512
AGAUUCUCUGUUUCUAUUGAUUC	chr11:93465301-93465575(-)$1	274	169	192	20.1581
ACACCCGUAGGGUGGGCGGGGUG	chr11:2152370-2152608(-)$1	238	174	197	22.5512
ACACCCGUAGGGUGGGCGGGGUG	chr11:2152326-2152530(-)$1	204	96	119	22.5512
acaugcacacacagcacacacgc	chr11:2152765-2152983(-)$1	218	130	153	19.1541
ACACCCGUAGGGUGGGCGGGGUG	chr11:2152281-2152490(-)$1	209	56	79	22.5512
ACACCCGUAGGGUGGGCGGGGUG	chr11:2152349-2152561(-)$1	212	127	150	22.5512
CUCUCCAGGGUAAGAGGAGGAGA	chr1:249151582-249151903(-)$1	321	145	168	25.1834
acUCAUGCGCAGCACAUACAUGA	chr11:2152605-2152812(-)$1	207	50	73	23.3748
CUGCUAUAACAAUAAACUGUAGA	chr14:21484914-21485174(-)$1	260	212	235	19.9205
AGCAUGAAAACCAAAAUCCAUGC	chr11:2153275-2153493(-)$1	218	42	65	25.3066
CCAGCUUGGGAAGUUAGAAGGAA	chr19:54970868-54971104(+)$1	236	129	152	20.4823
acUCAUGCGCAGCACAUACAUGA	chr11:2152709-2152913(-)$1	204	151	174	23.3748
AGCAUGAAAACCAAAAUCCAUGC	chr11:2153246-2153457(-)$1	211	6	29	25.3066
GUCCUCCCCCAGUGUCCAAGAGG	chr17:74732098-74732358(-)$1	260	21	44	23.6197
acUCAUGCGCAGCACAUACAUGA	chr11:2152661-2152863(-)$1	202	101	124	23.3748
GCAUAUCUAAGCAACUACGAUAU	chr11:2152426-2152628(-)$1	202	4	27	24.0796
AGCAUGAAAACCAAAAUCCAUGC	chr11:2153263-2153475(-)$1	212	24	47	25.3066
CGUCGCACAUUCGGCCCCCGCGA	chr11:2159523-2159738(-)$1	215	148	171	23.7357
acgugcacacauacacaggcaca	chr8:27529104-27529351(+)$1	247	92	115	20.3359
acUCAUGCGCAGCACAUACAUGA	chr11:2152663-2152869(-)$1	206	107	130	23.3748
AGCAUGAAAACCAAAAUCCAUGC	chr11:2153293-2153524(-)$1	231	73	96	25.3066
acUCAUGCGCAGCACAUACAUGA	chr11:2152648-2152851(-)$1	203	89	112	23.3748
ACACCCGUAGGGUGGGCGGGGUG	chr11:2152361-2152570(-)$1	209	136	159	22.5512
cacagcacacacacaaacgcaca	chr11:2153217-2153431(-)$1	214	144	167	21.5187
UGGUUUAAAAAAUAAGGGAAGCC	chr14:54421088-54421339(-)$1	251	100	123	21.0629
acUCAUGCGCAGCACAUACAUGA	chr11:2152582-2152788(-)$1	206	26	49	23.3748
ACACCCGUAGGGUGGGCGGGGUG	chr11:2152298-2152502(-)$1	204	68	91	22.5512
CCUGGGGCUUCUCCUGACCCAGU	chr11:2153992-2154200(-)$1	208	92	115	22.8994
acUCAUGCGCAGCACAUACAUGA	chr11:2152624-2152827(-)$1	203	65	88	23.3748
CCUGGGGCUUCUCCUGACCCAGU	chr11:2154036-2154243(-)$1	207	135	158	22.8994
acaugcacacacagcacacacgc	chr11:2152698-2152903(-)$1	205	50	73	19.1541
GCAUAUCUAAGCAACUACGAUAU	chr11:2152428-2152630(-)$1	202	6	29	24.0796
acUCAUGCGCAGCACAUACAUGA	chr11:2152644-2152848(-)$1	204	86	109	23.3748
AGUGUGUUGUUCUUGUUCACAGU	chr2:217069826-217070076(+)$1	250	62	85	19.9224
acaugcacacacagcacacacgc	chr11:2152722-2152929(-)$1	207	76	99	19.1541
acaugcacacacagcacacacgc	chr11:2152669-2152876(-)$1	207	23	46	19.1541
GUUCCUAUAUAAACUCCAAAGGG	chr11:62283977-62284242(-)$1	265	88	111	20.4299
AGCAUGAAAACCAAAAUCCAUGC	chr11:2153407-2153615(-)$1	208	164	187	25.3066
CGUCGCACAUUCGGCCCCCGCGA	chr11:2159497-2159707(-)$1	210	117	140	23.7357
UGGUUUAAAUAUGAAUGAACAAA	chr5:73925461-73925737(-)$1	276	106	129	23.4302
acaugcacacacagcacacacgc	chr11:2152694-2152898(-)$1	204	45	68	19.1541
CUAAGCAACUACGAUAUCUGUAU	chr11:2152419-2152622(-)$1	203	4	27	21.4037
acUCAUGCGCAGCACAUACAUGA	chr11:2152612-2152816(-)$1	204	54	77	23.3748
acaugcacacacagcacacacgc	chr11:2152736-2152940(-)$1	204	87	110	19.1541
AGCAUGAAAACCAAAAUCCAUGC	chr11:2153422-2153674(-)$1	252	223	246	25.3066

#DB
.(((((............)))))	chr11:2153380-2153601(-)$1	1	150	173	25.3066
((((((............)))))	chr11:2152290-2152498(-)$1	1	64	87	22.5512
.(((((...............))	chr11:2152741-2152948(-)$1	1	95	118	19.1541
.(((((............)))))	chr11:2153377-2153580(-)$1	1	129	152	25.3066
..(((((...........)))))	chr11:2152564-2152775(-)$1	1	13	36	23.3748
(...((............))...	chr11:2153209-2153417(-)$1	1	130	153	21.5187
...((.............))...	chr17:7082310-7082558(-)$1	1	53	76	19.7860
.(((((............)))))	chr11:2153415-2153622(-)$1	1	171	194	25.3066
..(((((...........)))))	chr11:2152651-2152857(-)$1	1	95	118	23.3748
.(((((...............))	chr11:2152758-2152965(-)$1	1	112	135	19.1541
.(((((...............))	chr11:2152783-2152999(-)$1	1	146	169	19.1541
((.(((.............))).	chr3:185637074-185637362(-)$1	1	248	271	20.5500
(...((............))...	chr11:2153190-2153400(-)$1	1	113	136	21.5187
((((((............)))))	chr11:2152334-2152542(-)$1	1	108	131	22.5512
(((.(((...........))).)	chr11:2151849-2152075(-)$1	1	91	114	20.5980
..(((((...........)))))	chr11:2152639-2152844(-)$1	1	82	105	23.3748
..(((((...........)))))	chr11:2152627-2152839(-)$1	1	77	100	23.3748
(((..(...........).))))	chr14:23791055-23791278(+)$1	1	117	140	19.6982
..(((((...........)))))	chr11:2152595-2152805(-)$1	1	43	66	23.3748
..(((((...........)))))	chr11:2152729-2152933(-)$1	1	171	194	23.3748
.(((((............)))))	chr11:2153347-2153572(-)$1	1	121	144	25.3066
.(((((...............))	chr11:2152748-2152958(-)$1	1	105	128	19.1541
((((((............)))))	chr11:2152330-2152534(-)$1	1	100	123	22.5512
.((.((............)).))	chr11:93465301-93465575(-)$1	1	169	192	20.1581
((((((............)))))	chr11:2152370-2152608(-)$1	1	174	197	22.5512
((((((............)))))	chr11:2152326-2152530(-)$1	1	96	119	22.5512
.(((((...............))	chr11:2152765-2152983(-)$1	1	130	153	19.1541
((((((............)))))	chr11:2152281-2152490(-)$1	1	56	79	22.5512
((((((............)))))	chr11:2152349-2152561(-)$1	1	127	150	22.5512
.(((((............)))))	chr1:249151582-249151903(-)$1	1	145	168	25.1834
..(((((...........)))))	chr11:2152605-2152812(-)$1	1	50	73	23.3748
((((..............)))))	chr14:21484914-21485174(-)$1	1	212	235	19.9205
.(((((............)))))	chr11:2153275-2153493(-)$1	1	42	65	25.3066
((..(((...........)))..	chr19:54970868-54971104(+)$1	1	129	152	20.4823
..(((((...........)))))	chr11:2152709-2152913(-)$1	1	151	174	23.3748
.(((((............)))))	chr11:2153246-2153457(-)$1	1	6	29	25.3066
.(((((.............))))	chr17:74732098-74732358(-)$1	1	21	44	23.6197
..(((((...........)))))	chr11:2152661-2152863(-)$1	1	101	124	23.3748
(.(((((...........)))))	chr11:2152426-2152628(-)$1	1	4	27	24.0796
.(((((............)))))	chr11:2153263-2153475(-)$1	1	24	47	25.3066
.(((((.............))))	chr11:2159523-2159738(-)$1	1	148	171	23.7357
..((((............)))).	chr8:27529104-27529351(+)$1	1	92	115	20.3359
..(((((...........)))))	chr11:2152663-2152869(-)$1	1	107	130	23.3748
.(((((............)))))	chr11:2153293-2153524(-)$1	1	73	96	25.3066
..(((((...........)))))	chr11:2152648-2152851(-)$1	1	89	112	23.3748
((((((............)))))	chr11:2152361-2152570(-)$1	1	136	159	22.5512
(...((............))...	chr11:2153217-2153431(-)$1	1	144	167	21.5187
((((((............)))))	chr14:54421088-54421339(-)$1	1	100	123	21.0629
..(((((...........)))))	chr11:2152582-2152788(-)$1	1	26	49	23.3748
((((((............)))))	chr11:2152298-2152502(-)$1	1	68	91	22.5512
.(((((...........))))).	chr11:2153992-2154200(-)$1	1	92	115	22.8994
..(((((...........)))))	chr11:2152624-2152827(-)$1	1	65	88	23.3748
.(((((...........))))).	chr11:2154036-2154243(-)$1	1	135	158	22.8994
.(((((...............))	chr11:2152698-2152903(-)$1	1	50	73	19.1541
(.(((((...........)))))	chr11:2152428-2152630(-)$1	1	6	29	24.0796
..(((((...........)))))	chr11:2152644-2152848(-)$1	1	86	109	23.3748
(.((((...........)))).)	chr2:217069826-217070076(+)$1	1	62	85	19.9224
.(((((...............))	chr11:2152722-2152929(-)$1	1	76	99	19.1541
.(((((...............))	chr11:2152669-2152876(-)$1	1	23	46	19.1541
((((((..............)))	chr11:62283977-62284242(-)$1	1	88	111	20.4299
.(((((............)))))	chr11:2153407-2153615(-)$1	1	164	187	25.3066
.(((((.............))))	chr11:2159497-2159707(-)$1	1	117	140	23.7357
.(((((..............)))	chr5:73925461-73925737(-)$1	1	106	129	23.4302
.(((((...............))	chr11:2152694-2152898(-)$1	1	45	68	19.1541
(((.(((...........))).)	chr11:2152419-2152622(-)$1	1	4	27	21.4037
..(((((...........)))))	chr11:2152612-2152816(-)$1	1	54	77	23.3748
.(((((...............))	chr11:2152736-2152940(-)$1	1	87	110	19.1541
.(((((............)))))	chr11:2153422-2153674(-)$1	1	223	246	25.3066

#PSSM
: : 0.54	= : 0.13	b : 0.08	e : 0.04	[ : 0.04	f : 0.02	! : 0.02	$ : 0.02	# : 0.01	c : 0.01	g : 0.01	i : 0.01	
e : 0.42	: : 0.23	= : 0.13	" : 0.04	[ : 0.04	f : 0.02	b : 0.02	# : 0.01	c : 0.01	g : 0.01	i : 0.01	
e : 0.66	= : 0.13	" : 0.04	f : 0.02	d : 0.02	# : 0.01	[ : 0.01	c : 0.01	b : 0.01	g : 0.01	! : 0.01	i : 0.01	
e : 0.64	= : 0.13	" : 0.04	[ : 0.04	c : 0.02	! : 0.02	d : 0.02	b : 0.01	g : 0.01	f : 0.01	
e : 0.64	= : 0.13	b : 0.07	c : 0.07	d : 0.02	! : 0.01	w : 0.01	f : 0.01	
e : 0.64	= : 0.13	c : 0.07	b : 0.05	d : 0.02	v : 0.01	a : 0.01	w : 0.01	f : 0.01	
u : 0.38	e : 0.25	x : 0.14	v : 0.07	t : 0.05	c : 0.04	w : 0.04	
u : 0.38	t : 0.35	x : 0.14	v : 0.07	w : 0.04	
u : 0.38	t : 0.35	x : 0.14	v : 0.07	w : 0.04	
u : 0.38	t : 0.35	x : 0.14	v : 0.07	w : 0.04	
u : 0.38	t : 0.35	x : 0.14	v : 0.07	w : 0.04	
u : 0.38	t : 0.35	x : 0.14	v : 0.07	w : 0.04	
u : 0.38	t : 0.35	x : 0.14	v : 0.07	w : 0.04	
u : 0.38	t : 0.35	x : 0.14	v : 0.07	w : 0.04	
u : 0.38	t : 0.35	x : 0.14	v : 0.07	w : 0.04	
u : 0.38	t : 0.35	x : 0.14	v : 0.07	w : 0.04	
u : 0.38	t : 0.35	x : 0.14	v : 0.07	w : 0.04	
u : 0.38	t : 0.29	x : 0.14	v : 0.07	w : 0.04	e : 0.02	a : 0.01	d : 0.01	
e : 0.44	x : 0.14	= : 0.13	b : 0.07	v : 0.05	c : 0.04	d : 0.02	w : 0.02	] : 0.01	g : 0.01	f : 0.01	
e : 0.48	x : 0.14	= : 0.13	b : 0.07	c : 0.05	f : 0.02	d : 0.02	w : 0.02	g : 0.01	
e : 0.50	x : 0.14	= : 0.13	c : 0.07	3 : 0.04	f : 0.02	d : 0.02	4 : 0.01	] : 0.01	g : 0.01	
e : 0.64	= : 0.13	3 : 0.04	] : 0.04	c : 0.02	f : 0.02	4 : 0.01	b : 0.01	g : 0.01	2 : 0.01	d : 0.01	
e : 0.64	= : 0.13	3 : 0.04	4 : 0.04	c : 0.02	f : 0.02	] : 0.01	b : 0.01	g : 0.01	2 : 0.01	: : 0.01	

#score	1520.7598765266887
#seq	68
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_UTR_m2_run2.txt

#BEAR
ddddddddd[addddoooooodddd]a333dddd2	chr17:45788774-45789029(+)$1	255	118	153	12.8583
========="""cccooooooccc55555======	chr10:102122145-102122364(+)$1	219	61	96	15.2311
fff"""eeeee[cccooooooccc]eeeee]ffff	chr9:140343047-140343376(-)$1	329	62	97	14.7611
e]ddddccc"""cccooooooccc333ccc:ffff	chr17:57188324-57188752(-)$1	428	300	335	14.7933
ggeeeee[ccc[cccooooooccc]ccc]eeeee:	chr11:71145697-71145957(-)$1	260	77	112	15.0236
c!!ffffffffffffooooooffffff]ffffff2	chr17:61670179-61670448(+)$1	269	3	38	12.5610
=======!!ffffffooooooffffff]=======	chr20:49199562-49199810(+)$1	248	163	198	15.4934
===============ppppppp=============	chr12:107366591-107366807(+)$1	216	49	84	12.0004
[iiiiiiiii"""bbccclllccc]bb]iiiiiii	chr15:75128543-75128864(-)$1	321	55	90	13.0161
hhhhhffffff[cccoooooocccffffff22hhh	chr17:79880072-79880390(-)$1	318	249	284	12.9017
ddd"""eeeeeddddoooooodddd]eeeee333d	chr1:36386938-36387164(+)$1	226	162	197	13.4154
[ccc[ggggggg[cccmmmmccc]ggggggg]ccc	chr8:27144183-27144460(-)$1	277	164	199	11.5994
[ddddffffffddddoooooodddd22ffffff22	chr5:150647660-150647874(+)$1	214	103	138	13.0807
============!!ammmma22============:	chr7:92242328-92242600(-)$1	272	1	36	13.0965
ccc[ggggggg[cccoooooocccggggggg22cc	chr3:9519621-9519853(+)$1	232	117	152	16.2550
========="""cccooooooccc55555======	chr10:102122078-102122281(+)$1	203	128	163	15.2311
dddd[dddd####bboooooobbdddd]dddd22c	chr16:69496752-69497040(+)$1	288	232	267	12.8687
####ffffff"""ddddllldddd333ffffff44	chr12:53805978-53806236(+)$1	258	174	209	11.3372
###ccc[dddd[aooooooa]dddd333cccbb22	chr11:62482459-62482720(-)$1	261	30	65	12.2753
fff============oooooo============::	chr17:75494733-75494987(+)$1	254	185	220	15.7679
::iiiiiiiii!!bboooooobb333iiiiiiiii	chr16:678822-679159(+)$1	337	126	161	15.4883
[iiiiiiiii!!cccooooooccc333iiiiiiii	chr10:103923035-103923317(+)$1	282	12	47	19.2928
ggggggdddd[ddddoooooodddd22dddd22gg	chr19:1038019-1038292(+)$1	273	161	196	13.3306
ii[hhhhhhhh[cccooooooccc22hhhhhhhh]	chr2:47129692-47129950(-)$1	258	127	162	13.7255
"dddd[a[eeeee[aooooooa]eeeee]adddd]	chr14:90871378-90871715(+)$1	337	229	264	13.5461
!!bb!!dddd"""bboooooobb333dddd22bb]	chr3:38295991-38296202(+)$1	211	58	93	14.0089
==========="""aooooooa22===========	chr19:10663712-10664039(-)$1	327	69	104	18.3522
d!!eeeee####cccooooooccc22eeeee22dd	chr12:120118391-120118629(+)$1	238	192	227	15.4796
ffffffiiiiiiiiiooooooiiiiiiiiicccmm	chr17:33337727-33337962(-)$1	235	86	121	14.3541
[ffffff!!ccc[aooooooa]ccc22ffffff33	chr3:5220963-5221203(+)$1	240	23	58	14.2755
[cccffffff!!cccooooooccc22ffffff555	chr17:79687674-79688032(+)$1	358	81	116	13.8384
ii!!ffffff!!a[cccmmmmccc]a]ffffff44	chr22:22276215-22276484(-)$1	269	54	89	11.5607
:bb[===========oooooo===========]bb	chr17:1963119-1963408(-)$1	289	185	220	15.8147
[===========!!ammmma22===========cc	chr7:92242519-92242766(-)$1	247	167	202	13.8816
dddd[dddd"""cccooooooccc]dddd]dddd3	chr1:41493213-41493494(-)$1	281	182	217	14.8703
[ffffff!!eeeeeooooooeeeee333ffffff]	chr19:1853096-1853360(-)$1	264	110	145	12.8611
"==========[ccclllccc]==========ccc	chr1:19665379-19665687(-)$1	308	188	223	13.9854
ccc[iiiiiiiii[aooooooa]iiiiiiiii333	chr7:73610456-73610671(+)$1	215	70	105	17.5192
$$$$ddddccc[cccooooooccc]ccc]dddd55	chr7:4802976-4803210(+)$1	234	12	47	13.1750
ddd==========[aooooooa]==========22	chr19:19467830-19468071(+)$1	241	55	90	17.7807
"==============ppppppp=============	chr22:41995318-41995562(-)$1	244	178	213	12.0876
:ccc!!eeeee!!bboooooobb22eeeee22ccc	chr20:1147510-1147758(+)$1	248	111	146	12.8828
iiiii"""bb!!bboooooobb]bb22iiiiiiii	chr19:2273117-2273367(+)$1	250	42	77	13.9814
ddd!!ccc!!eeeeeooooooeeeee]ccc]dddd	chr10:72521004-72521249(+)$1	245	45	80	12.9268
"ccc[eeeee!!ccc[aooooooa]ccc]eeeee]	chr4:2263544-2263831(-)$1	287	116	151	13.8415
==========[a"""ccclllccc]a]========	chr7:44425302-44425530(-)$1	228	71	106	14.3038
==========[cccammmma]ccc]==========	chr1:87571144-87571402(+)$1	258	51	86	14.7193
eeeeeeeee[ccc[aooooooa]ccc22eeeee]e	chr15:74923796-74924123(-)$1	327	147	182	14.4262
!!eeeee[a[a!!cccmmmmccc22a]a]eeeee2	chr12:53907667-53907923(-)$1	256	98	133	11.7178
c[eeeee[ccc[bbaooooooa]bb]ccceeeeec	chr7:99632677-99633024(+)$1	347	96	131	14.2096
da[eeeee!!eeeeeooooooeeeee22eeeee]a	chr7:99172008-99172274(+)$1	266	102	137	13.2808
eeeee[dddd!!cccooooooccc333ddddeeee	chr7:6203552-6203777(-)$1	225	189	224	15.5911
:eeeee[bb[bbcccooooooccc22bb]bb]eee	chr8:41401403-41401685(+)$1	282	5	40	12.4830

#otherMatches

#Seq PSSM
CCCCUGCCUCCCAGGCCAGAACCUGAGAACGGGCC	chr17:45788774-45789029(+)$1	255	118	153	12.8583
UUAGGAAUCUCUUCACUACCCUGAUUCUUGAUUCC	chr10:102122145-102122364(+)$1	219	61	96	15.2311
CAGCCUGGCUCUGUCUACACUGGCCGAGUCUCUGG	chr9:140343047-140343376(-)$1	329	62	97	14.7611
AAGACAGGAAAGUGUUUUAAUACAGGGUUCAGUAU	chr17:57188324-57188752(-)$1	428	300	335	14.7933
uggggagaaaggggcuuucaugucguuuccuuccu	chr11:71145697-71145957(-)$1	260	77	112	15.0236
UUCCAGACCAUGACUCUUCCUGGUUGUGGGUUUGU	chr17:61670179-61670448(+)$1	269	3	38	12.5610
UUUGAUGUCAGCCUUGCAUCAAGGGCUUUAUCAAA	chr20:49199562-49199810(+)$1	248	163	198	15.4934
uuuuuuuuuuuuuuuuuauaGUGGAGGGGAGGAAA	chr12:107366591-107366807(+)$1	216	49	84	12.0004
aggcuuggagacagucugacccagugcccucuagg	chr15:75128543-75128864(-)$1	321	55	90	13.0161
CUGGGCCUCGCGUGUCCCCGAGCAGUGAGGGUCCC	chr17:79880072-79880390(-)$1	318	249	284	12.9017
CUAUCCUGAUCUGGUGAUGAAGCCAUGAUUACUUU	chr1:36386938-36387164(+)$1	226	162	197	13.4154
ggcuagccugggaggaucagucuguccaggucagc	chr8:27144183-27144460(-)$1	277	164	199	11.5994
uggagugcaguggugcaaucucaccucacugcaac	chr5:150647660-150647874(+)$1	214	103	138	13.0807
UAUUAAGUUGUACUGAAUUCUUUGCAGCUUAAUGU	chr7:92242328-92242600(-)$1	272	1	36	13.0965
AGUGGAGUGUUUACACCUUGCUGUAACAUUUGAAC	chr3:9519621-9519853(+)$1	232	117	152	16.2550
UUAGGAAUCUCUUCACUACCCUGAUUCUUGAUUCC	chr10:102122078-102122281(+)$1	203	128	163	15.2311
uaaaaaAAAAUCUGAUUUAAUUCUUUUAUUUAUCA	chr16:69496752-69497040(+)$1	288	232	267	12.8687
AGUAUUUGGACUUUGGUACUGCUGUCUUCCAAGGU	chr12:53805978-53806236(+)$1	258	174	209	11.3372
AAACAGGGGCUGUCGGGGUGGGGCUGAGCUGCCGG	chr11:62482459-62482720(-)$1	261	30	65	12.2753
GCCGCGGCCUCCCCGAGGUUGUGGGGAGGCUGCAC	chr17:75494733-75494987(+)$1	254	185	220	15.7679
CCCCAUGGCCCGUUCCUGGGAGAUGAGGGCCGUGG	chr16:678822-679159(+)$1	337	126	161	15.4883
GGUAGAUUACAUUAGGUGAAAUUAUAGGUAAUCUA	chr10:103923035-103923317(+)$1	282	12	47	19.2928
GAGACCUGGGCUUGGAAGGAACCGGUCCCCGACGG	chr19:1038019-1038292(+)$1	273	161	196	13.3306
CUGAGAUUCUGAGUUCAGCCUAGCCACAGAGUCUA	chr2:47129692-47129950(-)$1	258	127	162	13.7255
CUUGUACUUCGUGUGCUCCGACCCAUGGUGACGAU	chr14:90871378-90871715(+)$1	337	229	264	13.5461
UUGACCAGCUUGCUAGAAAAAUACUUAGCUUUUCU	chr3:38295991-38296202(+)$1	211	58	93	14.0089
GGGGUCCUCCUUCCCUACCCUGCCAGGAGGGCCCC	chr19:10663712-10664039(-)$1	327	69	104	18.3522
CCUGGCUAUGGAACUAAAUACAGUGUUGGUCUUGC	chr12:120118391-120118629(+)$1	238	192	227	15.4796
AGUCUUUAUUUCCCAGGUUGGUGGGGAGUGAGGAG	chr17:33337727-33337962(-)$1	235	86	121	14.3541
GCACCAGAUCAAUGUUGGUUCUUUGCACUGGUGAG	chr3:5220963-5221203(+)$1	240	23	58	14.2755
CAGUGGCUUUAACAGUUAGUUUUGCCAAAGCCUCU	chr17:79687674-79688032(+)$1	358	81	116	13.8384
GCAUGAUUUUGGUGAGAUCUUUCUGGAAGAGUUUU	chr22:22276215-22276484(-)$1	269	54	89	11.5607
UGGUCGGGAGGGAGACCCAGCUCUCCUUUCUGUCC	chr17:1963119-1963408(-)$1	289	185	220	15.8147
UAUUAAGUUGUACUGAAUUCUUUGCAGCUUAAUGU	chr7:92242519-92242766(-)$1	247	167	202	13.8816
AGAGAGGCCCUCUGCAGAUAGGCGUGGCCCCUCUU	chr1:41493213-41493494(-)$1	281	182	217	14.8703
GGCCCCCAUGGGUGGUCCGGCAUCCUCAGGGGGUG	chr19:1853096-1853360(-)$1	264	110	145	12.8611
UCUCCCGUCCCACGGAGGCCGCGGGGUGGGGGCUG	chr1:19665379-19665687(-)$1	308	188	223	13.9854
UGCUGGUGCUGCACUGGGCUGACUGCGGCGCUGAC	chr7:73610456-73610671(+)$1	215	70	105	17.5192
UUAUCCGUGGCUCCGAUGUCCCGGUGCUGACGGCC	chr7:4802976-4803210(+)$1	234	12	47	13.1750
AGCUUUGGCGUCUGUGACUAAAGGGACGCUGGAUU	chr19:19467830-19468071(+)$1	241	55	90	17.7807
AGUCUGGGAGUCUCUAAUCCAGAGAGACUUUCAGA	chr22:41995318-41995562(-)$1	244	178	213	12.0876
CUUAGAUUUUCUAGCAGCAAAGUCCGAAAAGAUAG	chr20:1147510-1147758(+)$1	248	111	146	12.8828
GUGGGUAGGAACCGUAGACUCGCUCAUCUCGCCUG	chr19:2273117-2273367(+)$1	250	42	77	13.9814
GCCAGGGUAGGUGGGGGACUGUUCACAGCCAGGCC	chr10:72521004-72521249(+)$1	245	45	80	12.9268
gcgggAGGAUGGAGCUGAACUCCCUGCUGAUCCUG	chr4:2263544-2263831(-)$1	287	116	151	13.8415
CCUUGCAUCUCCAGACUGUUCCAGAGAAGGUGCGG	chr7:44425302-44425530(-)$1	228	71	106	14.3038
CCGUAUUAUGACUCCAUUAGUGAGCUGUGGUAUGG	chr1:87571144-87571402(+)$1	258	51	86	14.7193
GUCCUUUGCAGCUGUCAUCCCAGAGCAGGCAGAUG	chr15:74923796-74924123(-)$1	327	147	182	14.4262
CUGGUUAUGCAUCUCAAAUCUGACUUCCUUAGCCU	chr12:53907667-53907923(-)$1	256	98	133	11.7178
CUACAGGACUUCUACGUGUGUGAUAAAAGCCUGUG	chr7:99632677-99633024(+)$1	347	96	131	14.2096
ccaccuguccucccaaagugcugggguuacaggcg	chr7:99172008-99172274(+)$1	266	102	137	13.2808
CUGCUGAUGUUUUGUUUAGAUGCACACACAUGGCA	chr7:6203552-6203777(-)$1	225	189	224	15.5911
agagaugggguuucaugauguuggccaagcugguc	chr8:41401403-41401685(+)$1	282	5	40	12.4830

#DB
(((((((((.(((((......)))).)...)))).	chr17:45788774-45789029(+)$1	1	118	153	12.8583
(((((((((...(((......))).....))))))	chr10:102122145-102122364(+)$1	1	61	96	15.2311
(((...(((((.(((......))).))))).))))	chr9:140343047-140343376(-)$1	1	62	97	14.7611
).))))(((...(((......)))...))).((((	chr17:57188324-57188752(-)$1	1	300	335	14.7933
))(((((.(((.(((......))).))).))))).	chr11:71145697-71145957(-)$1	1	77	112	15.0236
(..((((((((((((......)))))).)))))).	chr17:61670179-61670448(+)$1	1	3	38	12.5610
(((((((..((((((......)))))).)))))))	chr20:49199562-49199810(+)$1	1	163	198	15.4934
(((((((((((((((.......)))))))))))))	chr12:107366591-107366807(+)$1	1	49	84	12.0004
.(((((((((...(((((...))).)).)))))))	chr15:75128543-75128864(-)$1	1	55	90	13.0161
(((((((((((.(((......)))))))))..)))	chr17:79880072-79880390(-)$1	1	249	284	12.9017
(((...(((((((((......)))).)))))...)	chr1:36386938-36387164(+)$1	1	162	197	13.4154
.(((.(((((((.(((....))).))))))).)))	chr8:27144183-27144460(-)$1	1	164	199	11.5994
.((((((((((((((......))))..))))))..	chr5:150647660-150647874(+)$1	1	103	138	13.0807
((((((((((((..(....)..)))))))))))).	chr7:92242328-92242600(-)$1	1	1	36	13.0965
(((.(((((((.(((......))))))))))..))	chr3:9519621-9519853(+)$1	1	117	152	16.2550
(((((((((...(((......))).....))))))	chr10:102122078-102122281(+)$1	1	128	163	15.2311
((((.((((....((......)))))).))))..)	chr16:69496752-69497040(+)$1	1	232	267	12.8687
....((((((...((((...))))...))))))..	chr12:53805978-53806236(+)$1	1	174	209	11.3372
...(((.((((.(......).))))...)))))..	chr11:62482459-62482720(-)$1	1	30	65	12.2753
)))((((((((((((......))))))))))))..	chr17:75494733-75494987(+)$1	1	185	220	15.7679
..(((((((((..((......))...)))))))))	chr16:678822-679159(+)$1	1	126	161	15.4883
.(((((((((..(((......)))...))))))))	chr10:103923035-103923317(+)$1	1	12	47	19.2928
((((((((((.((((......))))..))))..))	chr19:1038019-1038292(+)$1	1	161	196	13.3306
((.((((((((.(((......)))..)))))))).	chr2:47129692-47129950(-)$1	1	127	162	13.7255
.((((.(.(((((.(......).))))).))))).	chr14:90871378-90871715(+)$1	1	229	264	13.5461
..((..((((...((......))...))))..)).	chr3:38295991-38296202(+)$1	1	58	93	14.0089
(((((((((((...(......)..)))))))))))	chr19:10663712-10664039(-)$1	1	69	104	18.3522
(..(((((....(((......)))..)))))..))	chr12:120118391-120118629(+)$1	1	192	227	15.4796
))))))(((((((((......)))))))))(((..	chr17:33337727-33337962(-)$1	1	86	121	14.3541
.((((((..(((.(......).)))..))))))..	chr3:5220963-5221203(+)$1	1	23	58	14.2755
.(((((((((..(((......)))..))))))...	chr17:79687674-79688032(+)$1	1	81	116	13.8384
((..((((((..(.(((....))).).))))))..	chr22:22276215-22276484(-)$1	1	54	89	11.5607
.((.(((((((((((......))))))))))).))	chr17:1963119-1963408(-)$1	1	185	220	15.8147
.(((((((((((..(....)..)))))))))))))	chr7:92242519-92242766(-)$1	1	167	202	13.8816
((((.((((...(((......))).)))).)))).	chr1:41493213-41493494(-)$1	1	182	217	14.8703
.((((((..(((((......)))))...)))))).	chr19:1853096-1853360(-)$1	1	110	145	12.8611
.((((((((((.(((...))).)))))))))))))	chr1:19665379-19665687(-)$1	1	188	223	13.9854
(((.(((((((((.(......).)))))))))...	chr7:73610456-73610671(+)$1	1	70	105	17.5192
....(((((((.(((......))).))).))))..	chr7:4802976-4803210(+)$1	1	12	47	13.1750
(((((((((((((.(......).))))))))))..	chr19:19467830-19468071(+)$1	1	55	90	17.7807
.((((((((((((((.......)))))))))))))	chr22:41995318-41995562(-)$1	1	178	213	12.0876
.(((..(((((..((......))..)))))..)))	chr20:1147510-1147758(+)$1	1	111	146	12.8828
(((((...((..((......)).))..))))))))	chr19:2273117-2273367(+)$1	1	42	77	13.9814
(((..(((..(((((......))))).))).))))	chr10:72521004-72521249(+)$1	1	45	80	12.9268
.(((.(((((..(((.(......).))).))))).	chr4:2263544-2263831(-)$1	1	116	151	13.8415
((((((((((.(...(((...))).).))))))))	chr7:44425302-44425530(-)$1	1	71	106	14.3038
((((((((((.((((....).))).))))))))))	chr1:87571144-87571402(+)$1	1	51	86	14.7193
(((((((((.(((.(......).)))..))))).)	chr15:74923796-74924123(-)$1	1	147	182	14.4262
..(((((.(.(..(((....)))..).).))))).	chr12:53907667-53907923(-)$1	1	98	133	11.7178
(.(((((.(((.(((......).)).)))))))))	chr7:99632677-99633024(+)$1	1	96	131	14.2096
)(.(((((..(((((......)))))..))))).)	chr7:99172008-99172274(+)$1	1	102	137	13.2808
(((((.((((..(((......)))...))))))))	chr7:6203552-6203777(-)$1	1	189	224	15.5911
.(((((.((.(((((......)))..)).)).)))	chr8:41401403-41401685(+)$1	1	5	40	12.4830

#PSSM
d : 0.15	= : 0.15	[ : 0.15	c : 0.07	: : 0.07	" : 0.07	f : 0.05	e : 0.05	i : 0.05	g : 0.03	# : 0.03	! : 0.03	h : 0.01	$ : 0.01	
= : 0.20	d : 0.15	c : 0.11	f : 0.09	i : 0.09	! : 0.07	e : 0.05	g : 0.03	# : 0.03	] : 0.01	h : 0.01	: : 0.01	b : 0.01	$ : 0.01	[ : 0.01	a : 0.01	
= : 0.20	d : 0.16	e : 0.11	c : 0.11	f : 0.09	i : 0.07	! : 0.05	# : 0.03	[ : 0.03	b : 0.03	h : 0.01	g : 0.01	$ : 0.01	
= : 0.24	e : 0.15	d : 0.11	c : 0.09	f : 0.07	i : 0.07	[ : 0.05	" : 0.03	h : 0.03	! : 0.03	# : 0.01	g : 0.01	b : 0.01	$ : 0.01	
= : 0.26	e : 0.15	f : 0.13	d : 0.09	i : 0.09	[ : 0.07	! : 0.05	" : 0.03	h : 0.03	g : 0.03	c : 0.01	
= : 0.26	f : 0.16	e : 0.15	d : 0.09	i : 0.07	" : 0.05	g : 0.05	c : 0.03	[ : 0.03	! : 0.03	h : 0.01	
= : 0.26	e : 0.18	f : 0.15	d : 0.13	i : 0.09	c : 0.03	g : 0.03	[ : 0.03	h : 0.01	a : 0.01	" : 0.01	
= : 0.24	d : 0.15	e : 0.13	f : 0.11	i : 0.09	[ : 0.07	! : 0.05	c : 0.03	g : 0.03	h : 0.01	" : 0.01	b : 0.01	
= : 0.24	d : 0.13	e : 0.11	f : 0.11	! : 0.09	i : 0.09	c : 0.07	g : 0.03	b : 0.03	h : 0.01	# : 0.01	a : 0.01	
= : 0.20	f : 0.13	e : 0.11	i : 0.09	[ : 0.07	" : 0.07	c : 0.07	d : 0.07	g : 0.03	# : 0.03	! : 0.03	h : 0.01	b : 0.01	
= : 0.16	" : 0.13	e : 0.13	! : 0.11	c : 0.09	f : 0.07	i : 0.05	[ : 0.05	a : 0.03	g : 0.03	# : 0.03	d : 0.01	h : 0.01	b : 0.01	
[ : 0.16	! : 0.16	" : 0.15	= : 0.13	d : 0.07	e : 0.07	c : 0.05	f : 0.03	# : 0.03	i : 0.03	g : 0.01	a : 0.01	b : 0.01	
c : 0.35	= : 0.09	" : 0.09	! : 0.09	d : 0.07	e : 0.07	f : 0.03	[ : 0.03	a : 0.03	i : 0.03	b : 0.03	# : 0.01	
c : 0.37	b : 0.13	d : 0.09	[ : 0.09	= : 0.07	e : 0.05	f : 0.03	! : 0.03	" : 0.03	o : 0.01	i : 0.01	a : 0.01	
c : 0.37	a : 0.16	d : 0.09	b : 0.09	= : 0.07	o : 0.07	f : 0.03	e : 0.03	i : 0.01	" : 0.01	
o : 0.75	c : 0.09	m : 0.05	p : 0.03	d : 0.01	l : 0.01	[ : 0.01	
o : 0.75	m : 0.09	c : 0.05	p : 0.03	d : 0.01	l : 0.01	a : 0.01	
o : 0.77	m : 0.11	p : 0.03	c : 0.03	l : 0.03	
o : 0.77	m : 0.11	l : 0.05	p : 0.03	c : 0.01	
o : 0.75	a : 0.07	l : 0.05	m : 0.05	p : 0.03	c : 0.01	
o : 0.69	c : 0.05	p : 0.03	l : 0.03	2 : 0.03	] : 0.03	d : 0.01	a : 0.01	m : 0.01	e : 0.01	b : 0.01	
c : 0.39	d : 0.11	a : 0.11	b : 0.09	e : 0.05	f : 0.03	p : 0.03	2 : 0.03	= : 0.03	] : 0.03	i : 0.01	o : 0.01	
c : 0.41	= : 0.13	d : 0.11	] : 0.11	b : 0.07	e : 0.05	f : 0.03	2 : 0.01	i : 0.01	o : 0.01	
c : 0.39	= : 0.15	d : 0.13	e : 0.07	2 : 0.05	f : 0.03	3 : 0.03	i : 0.03	b : 0.03	] : 0.01	a : 0.01	
] : 0.16	= : 0.16	d : 0.11	3 : 0.11	2 : 0.11	e : 0.07	f : 0.05	5 : 0.03	g : 0.03	i : 0.03	c : 0.03	b : 0.03	
= : 0.18	3 : 0.15	2 : 0.15	e : 0.09	c : 0.07	] : 0.05	f : 0.05	a : 0.05	5 : 0.03	g : 0.03	d : 0.03	i : 0.03	b : 0.01	
= : 0.18	3 : 0.11	2 : 0.11	e : 0.09	c : 0.07	f : 0.07	] : 0.07	d : 0.05	i : 0.05	5 : 0.03	b : 0.03	g : 0.03	a : 0.01	h : 0.01	
= : 0.20	c : 0.11	f : 0.11	e : 0.09	i : 0.09	] : 0.07	d : 0.07	3 : 0.05	5 : 0.03	g : 0.03	2 : 0.03	h : 0.01	a : 0.01	b : 0.01	
= : 0.22	f : 0.15	e : 0.11	] : 0.11	i : 0.11	d : 0.09	c : 0.07	5 : 0.03	g : 0.03	3 : 0.01	h : 0.01	
= : 0.26	e : 0.18	f : 0.15	i : 0.11	d : 0.09	c : 0.05	g : 0.03	3 : 0.01	h : 0.01	a : 0.01	] : 0.01	b : 0.01	
= : 0.26	e : 0.15	d : 0.13	f : 0.13	i : 0.09	2 : 0.05	] : 0.03	g : 0.03	c : 0.03	: : 0.01	h : 0.01	b : 0.01	
= : 0.26	f : 0.16	e : 0.13	d : 0.11	2 : 0.11	i : 0.09	] : 0.03	3 : 0.01	b : 0.01	h : 0.01	c : 0.01	
= : 0.22	f : 0.15	e : 0.15	d : 0.09	i : 0.07	c : 0.07	2 : 0.07	h : 0.03	3 : 0.03	b : 0.03	5 : 0.01	] : 0.01	
= : 0.16	e : 0.11	d : 0.09	c : 0.09	f : 0.07	i : 0.07	2 : 0.07	3 : 0.05	h : 0.03	4 : 0.03	b : 0.03	5 : 0.03	] : 0.03	: : 0.01	g : 0.01	m : 0.01	
= : 0.15	c : 0.13	2 : 0.11	] : 0.09	i : 0.07	: : 0.05	d : 0.05	3 : 0.05	e : 0.05	f : 0.03	4 : 0.03	5 : 0.03	h : 0.01	g : 0.01	m : 0.01	b : 0.01	a : 0.01	

#score	747.1619997768413
#seq	53
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_CDS_m2_run1.txt

#BEAR
gggggggnnnnnggggggg	chr13:45911523-45911779(-)$1	256	56	75	10.9576
=======nnnnn=======	chr12:76449748-76449964(-)$1	216	183	202	11.7676
iiiiiiiillliiiiiiii	chr8:101725281-101725510(-)$1	229	143	162	7.9629
b[eeeeennnnneeeee]b	chr5:138700234-138700485(+)$1	251	229	248	8.4957
!!eeeeennnnneeeee22	chr6:27809333-27809577(+)$1	244	66	85	8.7769
[gggggggmmmmggggggg	chr17:38555238-38555461(-)$1	223	63	82	6.8408
d!!ddddnnnnnddddddd	chr19:47104519-47104794(+)$1	275	224	243	8.6081
gggggggnnnnnggggggg	chr1:16257305-16257553(+)$1	248	177	196	10.9576
gggggggnnnnnggggggg	chr12:76448699-76448970(-)$1	271	199	218	10.9576
gg[bb[annnnna]bb]gg	chrX:48652234-48652499(+)$1	265	87	106	9.4130
eeee[bbnnnnnbb]eeee	chr1:214817915-214818139(+)$1	224	49	68	9.1355
!gggggggmmmmggggggg	chr5:98236409-98236655(-)$1	246	98	117	6.8431
gg!!bboooooobb22ggg	chr2:152320763-152321017(+)$1	254	153	172	7.5823
ccccccooooooccc]ccc	chr6:26123922-26124219(-)$1	297	228	247	7.2488
gggggggnnnnnggggggg	chr11:67810673-67810988(+)$1	315	18	37	10.9576
dccc[bbnnnnnbb]cccG	chr7:91632338-91632634(+)$1	296	181	200	8.9747
gggggbbnnnnnbb]gggg	chr15:44085158-44085450(+)$1	292	101	120	10.5384
========mmmm=======	chr5:170814890-170815110(+)$1	220	114	133	7.8700
ff[bb[annnnna]bb]ff	chr12:95888712-95889004(+)$1	292	257	276	8.5954
gggg!!ccclllccc333g	chr19:3980517-3980776(-)$1	259	15	34	7.3648
=======oooooo======	chr17:79801302-79801592(-)$1	290	52	71	9.3212
cccddddnnnnndddd]cc	chrX:70793452-70793759(+)$1	307	16	35	8.9514
ddd[cccnnnnnccc4444	chr9:37126768-37127058(+)$1	290	58	77	9.2251
gggggggoooooogggggg	chr10:70546202-70546434(+)$1	232	91	110	8.6110
d!!ddddnnnnnddddddd	chr3:37367401-37367694(+)$1	293	88	107	8.6081
ee"""bbnnnnnbb333ee	chr2:152322048-152322310(+)$1	262	204	223	9.6703
!ccc!!aooooooa22ccc	chr9:127623675-127623925(-)$1	250	215	234	7.5044
eee!!bbnnnnnbb22eee	chr5:149827123-149827370(-)$1	247	206	225	9.1380
gggg[bbnnnnnbbggggg	chr1:8934783-8935001(-)$1	218	95	114	10.5881
cc[ddddnnnnndddd]cc	chr1:45244215-45244460(+)$1	245	27	46	9.2104
========mmmm=======	chr16:2814653-2814894(+)$1	241	198	217	7.8700
=======nnnnn=======	chr12:76449740-76449948(-)$1	208	167	186	11.7676
dd!!cccnnnnncccdddd	chr5:179147314-179147562(+)$1	248	16	35	9.2316
gggggggnnnnnggggggg	chr11:5290930-5291144(-)$1	214	126	145	10.9576
gggggggoooooogggggg	chr11:62297321-62297602(-)$1	281	74	93	8.6110
!a[ddddnnnnndddda]b	chr16:2814229-2814474(+)$1	245	144	163	8.9816
=======oooooo======	chr3:47727478-47727762(-)$1	284	87	106	9.3212
eeee[bbnnnnnbb]eeee	chr2:187368764-187369056(+)$1	292	103	122	9.1355
""eeeeennnnneeeee44	chr14:56083134-56083445(+)$1	311	253	272	8.9192
[ffffffnnnnnffffff]	chr15:66795598-66795830(-)$1	232	104	123	8.6445
""ggggggglllggggggg	chr7:6731542-6731794(-)$1	252	132	151	7.3806
cc[ddddnnnnndddd]cc	chr10:71148873-71149149(+)$1	276	33	52	9.2104
[bb!!bbnnnnnbb22bb]	chr3:14239433-14239695(+)$1	262	88	107	8.6061
=======nnnnn=======	chr12:76449711-76449917(-)$1	206	136	155	11.7676
[ggggggglllgggggggb	chr4:104081681-104081928(-)$1	247	224	243	7.1399
b"""cccooooooccc333	chr16:30080109-30080364(+)$1	255	219	238	7.6191
####cccnnnnnccc====	chr10:129913693-129914010(-)$1	317	177	196	10.5693

#otherMatches

#Seq PSSM
GAACAAUUUACUGUUGUUC	chr13:45911523-45911779(-)$1	256	56	75	10.9576
UUGAAGGGUAAACCUUUGA	chr12:76449748-76449964(-)$1	216	183	202	11.7676
AAUCCAAAGGAUUUGGAUU	chr8:101725281-101725510(-)$1	229	143	162	7.9629
UAGUGCAUCUUUUGCAUAA	chr5:138700234-138700485(+)$1	251	229	248	8.4957
AAGAUUUGGCUAAAAUUAA	chr6:27809333-27809577(+)$1	244	66	85	8.7769
CUUUUUUAAAAAUAGAAAA	chr17:38555238-38555461(-)$1	223	63	82	6.8408
AACGGGGCAGGACCCCUGA	chr19:47104519-47104794(+)$1	275	224	243	8.6081
UCCAUAGCAGAUUUAUGGA	chr1:16257305-16257553(+)$1	248	177	196	10.9576
UUUGUAACAUGCUUACAGG	chr12:76448699-76448970(-)$1	271	199	218	10.9576
UGGUGGCUUUAUGGUGGUG	chrX:48652234-48652499(+)$1	265	87	106	9.4130
AACACCAAAGCAUGAUGUU	chr1:214817915-214818139(+)$1	224	49	68	9.1355
ACCAUAGAAAGAUUUAUGG	chr5:98236409-98236655(-)$1	246	98	117	6.8431
UAAUAUGUCAGGAUUCUAC	chr2:152320763-152321017(+)$1	254	153	172	7.5823
CAGGUCCAUCCCGACACUG	chr6:26123922-26124219(-)$1	297	228	247	7.2488
GGGAGGCCUCCUGCCUUCC	chr11:67810673-67810988(+)$1	315	18	37	10.9576
AAAGAACUCAAUGUACUUA	chr7:91632338-91632634(+)$1	296	181	200	8.9747
CUGCUGCCGCCCGCAAGCA	chr15:44085158-44085450(+)$1	292	101	120	10.5384
UUUUCGGUAACUGCUGGGG	chr5:170814890-170815110(+)$1	220	114	133	7.8700
UCUCUGUUAAAUGGAGUGA	chr12:95888712-95889004(+)$1	292	257	276	8.5954
CCAGAAGGCUGAGCUGCAC	chr19:3980517-3980776(-)$1	259	15	34	7.3648
AAAUUCCGUCUGUGGGAUU	chr17:79801302-79801592(-)$1	290	52	71	9.3212
GCCUGAAGAAAGUUCGUGG	chrX:70793452-70793759(+)$1	307	16	35	8.9514
CAUUUCAGAAGGUGAUAAU	chr9:37126768-37127058(+)$1	290	58	77	9.2251
UUUUCUUAGGAAAAAGAAA	chr10:70546202-70546434(+)$1	232	91	110	8.6110
UCUUAGUAAACAACUAACU	chr3:37367401-37367694(+)$1	293	88	107	8.6081
GAGCACUGAAGAAGGAAUC	chr2:152322048-152322310(+)$1	262	204	223	9.6703
AGCUCUCUAAGAUGUAAGU	chr9:127623675-127623925(-)$1	250	215	234	7.5044
ACUGAUCUUUCUGGCAAGU	chr5:149827123-149827370(-)$1	247	206	225	9.1380
AGGUUGAUCUCUUCACCUC	chr1:8934783-8935001(-)$1	218	95	114	10.5881
UGCAGCGUGCAUCGCUUCA	chr1:45244215-45244460(+)$1	245	27	46	9.2104
UGGGUCUUCUCCAGGACUU	chr16:2814653-2814894(+)$1	241	198	217	7.8700
UUGAAGGGUAAACCUUUGA	chr12:76449740-76449948(-)$1	208	167	186	11.7676
GCCCUGGGCCAGCCAGCUG	chr5:179147314-179147562(+)$1	248	16	35	9.2316
GUUCUCAAUGCAUGGGAAU	chr11:5290930-5291144(-)$1	214	126	145	10.9576
CAGAUGUUGGUUUGCAUUU	chr11:62297321-62297602(-)$1	281	74	93	8.6110
UGACUCUUGAUCAGAGCCA	chr16:2814229-2814474(+)$1	245	144	163	8.9816
UCUUCUUUUCUAUAGGAAG	chr3:47727478-47727762(-)$1	284	87	106	9.3212
UUGUGUUGAAAAAAGAUAA	chr2:187368764-187369056(+)$1	292	103	122	9.1355
AUGUAUUUUUAUAAUGCUA	chr14:56083134-56083445(+)$1	311	253	272	8.9192
AGACAGCCCUAUGCUGUCA	chr15:66795598-66795830(-)$1	232	104	123	8.6445
AAUCCUUCUGCCAGAAGGG	chr7:6731542-6731794(-)$1	252	132	151	7.3806
GGCAUAGUGAUCCUAUUCC	chr10:71148873-71149149(+)$1	276	33	52	9.2104
UUUUUCUCUUCUAGUCAAC	chr3:14239433-14239695(+)$1	262	88	107	8.6061
UUGAAGGGUAAACCUUUGA	chr12:76449711-76449917(-)$1	206	136	155	11.7676
AUAGUUUAUUUUAAACUAG	chr4:104081681-104081928(-)$1	247	224	243	7.1399
UCCUACCUCAUUUGGUUCC	chr16:30080109-30080364(+)$1	255	219	238	7.6191
UACAGGGGGAGACCCAACU	chr10:129913693-129914010(-)$1	317	177	196	10.5693

#DB
(((((((.....)))))))	chr13:45911523-45911779(-)$1	1	56	75	10.9576
(((((((.....)))))))	chr12:76449748-76449964(-)$1	1	183	202	11.7676
((((((((...))))))))	chr8:101725281-101725510(-)$1	1	143	162	7.9629
(.(((((.....))))).)	chr5:138700234-138700485(+)$1	1	229	248	8.4957
..(((((.....)))))..	chr6:27809333-27809577(+)$1	1	66	85	8.7769
.(((((((....)))))))	chr17:38555238-38555461(-)$1	1	63	82	6.8408
(..((((.....)))))))	chr19:47104519-47104794(+)$1	1	224	243	8.6081
(((((((.....)))))))	chr1:16257305-16257553(+)$1	1	177	196	10.9576
(((((((.....)))))))	chr12:76448699-76448970(-)$1	1	199	218	10.9576
((.((.(.....).)).))	chrX:48652234-48652499(+)$1	1	87	106	9.4130
((((.((.....)).))))	chr1:214817915-214818139(+)$1	1	49	68	9.1355
.(((((((....)))))))	chr5:98236409-98236655(-)$1	1	98	117	6.8431
((..((......))..)))	chr2:152320763-152321017(+)$1	1	153	172	7.5823
((((((......))).)))	chr6:26123922-26124219(-)$1	1	228	247	7.2488
(((((((.....)))))))	chr11:67810673-67810988(+)$1	1	18	37	10.9576
)(((.((.....)).))))	chr7:91632338-91632634(+)$1	1	181	200	8.9747
(((((((.....)).))))	chr15:44085158-44085450(+)$1	1	101	120	10.5384
((((((((....)))))))	chr5:170814890-170815110(+)$1	1	114	133	7.8700
((.((.(.....).)).))	chr12:95888712-95889004(+)$1	1	257	276	8.5954
((((..(((...)))...)	chr19:3980517-3980776(-)$1	1	15	34	7.3648
(((((((......))))))	chr17:79801302-79801592(-)$1	1	52	71	9.3212
(((((((.....)))).))	chrX:70793452-70793759(+)$1	1	16	35	8.9514
(((.(((.....)))....	chr9:37126768-37127058(+)$1	1	58	77	9.2251
(((((((......))))))	chr10:70546202-70546434(+)$1	1	91	110	8.6110
(..((((.....)))))))	chr3:37367401-37367694(+)$1	1	88	107	8.6081
((...((.....))...))	chr2:152322048-152322310(+)$1	1	204	223	9.6703
.(((..(......)..)))	chr9:127623675-127623925(-)$1	1	215	234	7.5044
(((..((.....))..)))	chr5:149827123-149827370(-)$1	1	206	225	9.1380
((((.((.....)))))))	chr1:8934783-8935001(-)$1	1	95	114	10.5881
((.((((.....)))).))	chr1:45244215-45244460(+)$1	1	27	46	9.2104
((((((((....)))))))	chr16:2814653-2814894(+)$1	1	198	217	7.8700
(((((((.....)))))))	chr12:76449740-76449948(-)$1	1	167	186	11.7676
((..(((.....)))))))	chr5:179147314-179147562(+)$1	1	16	35	9.2316
(((((((.....)))))))	chr11:5290930-5291144(-)$1	1	126	145	10.9576
(((((((......))))))	chr11:62297321-62297602(-)$1	1	74	93	8.6110
.(.((((.....))))).)	chr16:2814229-2814474(+)$1	1	144	163	8.9816
(((((((......))))))	chr3:47727478-47727762(-)$1	1	87	106	9.3212
((((.((.....)).))))	chr2:187368764-187369056(+)$1	1	103	122	9.1355
..(((((.....)))))..	chr14:56083134-56083445(+)$1	1	253	272	8.9192
.((((((.....)))))).	chr15:66795598-66795830(-)$1	1	104	123	8.6445
..(((((((...)))))))	chr7:6731542-6731794(-)$1	1	132	151	7.3806
((.((((.....)))).))	chr10:71148873-71149149(+)$1	1	33	52	9.2104
.((..((.....))..)).	chr3:14239433-14239695(+)$1	1	88	107	8.6061
(((((((.....)))))))	chr12:76449711-76449917(-)$1	1	136	155	11.7676
.(((((((...))))))))	chr4:104081681-104081928(-)$1	1	224	243	7.1399
(...(((......)))...	chr16:30080109-30080364(+)$1	1	219	238	7.6191
....(((.....)))))))	chr10:129913693-129914010(-)$1	1	177	196	10.5693

#PSSM
g : 0.25	= : 0.14	d : 0.10	! : 0.08	[ : 0.08	e : 0.08	c : 0.08	b : 0.04	" : 0.04	i : 0.02	f : 0.02	# : 0.02	
g : 0.31	= : 0.14	c : 0.12	e : 0.08	! : 0.06	" : 0.06	f : 0.04	d : 0.04	i : 0.02	[ : 0.02	a : 0.02	b : 0.02	# : 0.02	
g : 0.29	= : 0.14	e : 0.12	[ : 0.10	! : 0.08	c : 0.08	" : 0.04	i : 0.02	d : 0.02	f : 0.02	b : 0.02	# : 0.02	
g : 0.29	= : 0.14	d : 0.12	e : 0.10	! : 0.08	c : 0.06	b : 0.04	" : 0.04	i : 0.02	[ : 0.02	f : 0.02	# : 0.02	
g : 0.25	= : 0.14	d : 0.12	c : 0.10	[ : 0.08	! : 0.08	e : 0.06	b : 0.06	i : 0.02	" : 0.02	f : 0.02	
g : 0.23	b : 0.19	= : 0.14	d : 0.12	c : 0.10	e : 0.06	[ : 0.04	! : 0.04	i : 0.02	f : 0.02	
g : 0.23	b : 0.17	= : 0.14	d : 0.12	c : 0.10	e : 0.06	a : 0.06	o : 0.04	i : 0.02	f : 0.02	
n : 0.65	o : 0.17	g : 0.08	= : 0.04	i : 0.02	c : 0.02	
n : 0.65	o : 0.17	m : 0.08	l : 0.04	c : 0.02	g : 0.02	
n : 0.65	o : 0.17	l : 0.08	m : 0.08	
n : 0.65	o : 0.17	l : 0.08	m : 0.08	
n : 0.65	o : 0.17	m : 0.08	l : 0.04	i : 0.02	g : 0.02	
g : 0.19	b : 0.19	d : 0.12	o : 0.12	= : 0.10	c : 0.10	e : 0.06	a : 0.04	i : 0.02	f : 0.02	
g : 0.23	b : 0.19	= : 0.14	d : 0.12	c : 0.12	e : 0.06	] : 0.04	i : 0.02	a : 0.02	f : 0.02	
g : 0.25	= : 0.14	d : 0.12	c : 0.12	] : 0.08	2 : 0.08	e : 0.06	b : 0.04	i : 0.02	3 : 0.02	f : 0.02	
g : 0.27	= : 0.17	d : 0.14	e : 0.10	2 : 0.08	b : 0.04	c : 0.04	3 : 0.04	i : 0.02	] : 0.02	4 : 0.02	f : 0.02	
g : 0.29	= : 0.17	e : 0.12	] : 0.10	d : 0.06	c : 0.06	3 : 0.06	i : 0.02	4 : 0.02	a : 0.02	f : 0.02	b : 0.02	
g : 0.31	= : 0.17	c : 0.12	e : 0.08	d : 0.06	] : 0.04	f : 0.04	3 : 0.04	4 : 0.04	i : 0.02	2 : 0.02	b : 0.02	
g : 0.31	= : 0.17	c : 0.10	e : 0.08	b : 0.06	d : 0.06	4 : 0.04	] : 0.04	i : 0.02	2 : 0.02	G : 0.02	f : 0.02	3 : 0.02	

#score	426.4115102181487
#seq	47
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_CDS_m2_run1.txt

#BEAR
ddddqqqqqqqqdddd:	chr22:51162458-51162748(+)$1	290	132	149	11.1752
ggggqqqqqqqqggggg	chr2:186657735-186657997(-)$1	262	197	214	11.9101
eeeesssssssssseee	chr17:26937537-26937901(-)$1	364	70	87	9.7982
eeeeeqqqqqqqqeeee	chr12:56320825-56321066(-)$1	241	223	240	11.6937
eeeeqqqqqqqqeeeee	chr17:55509822-55510161(+)$1	339	141	158	13.5574
eeeeqqqqqqqqeeeee	chr3:99569009-99569301(+)$1	292	75	92	13.5574
ffffqqqqqqqqfffff	chr19:45912459-45912728(-)$1	269	153	170	11.2590
eeeesssssssssseee	chr2:186659140-186659385(-)$1	245	34	51	9.7982
eeeesssssssssseee	chr3:99568704-99568988(+)$1	284	117	134	9.7982
[cccqqqqqqqqccc]f	chr7:141478312-141478615(+)$1	303	260	277	11.9030
====qqqqqqqq=====	chr19:45911825-45912096(-)$1	271	85	102	12.3326
eebbqqqqqqqqbb]ee	chr3:99569369-99569631(+)$1	262	144	161	12.2579
dd[aqqqqqqqqadddd	chr17:44408651-44408936(-)$1	285	258	275	12.0930
eeeeqqqqqqqqeeeee	chr3:99568176-99568417(+)$1	241	215	232	13.5574
a[bbqqqqqqqqbb]a3	chr3:99569629-99569892(+)$1	263	34	51	11.3035
eeeesssssssssseee	chr2:186659248-186659494(-)$1	246	143	160	9.7982
#cccqqqqqqqqccc44	chr7:141464396-141464686(+)$1	290	52	69	11.9077
iiiiqqqqqqqqiiiii	chr3:99567548-99567808(+)$1	260	85	102	11.9443
ddddqqqqqqqqdddd4	chr7:141478434-141478713(+)$1	279	177	194	12.2659
eeeeqqqqqqqqeeeee	chr3:99568245-99568495(+)$1	250	146	163	13.5574
ddddqqqqqqqqdddd4	chr2:186655215-186655509(-)$1	294	102	119	12.2659

#otherMatches

#Seq PSSM
GGUCUCGUCAUUGGCUC	chr22:51162458-51162748(+)$1	290	132	149	11.1752
GCAACAGGAAAAUUGCU	chr2:186657735-186657997(-)$1	262	197	214	11.9101
GGGUUCUUAUUCCUACC	chr17:26937537-26937901(-)$1	364	70	87	9.7982
CGGAGCCGCUUCUCUCC	chr12:56320825-56321066(-)$1	241	223	240	11.6937
AGGCCUCUCCCUGUCUG	chr17:55509822-55510161(+)$1	339	141	158	13.5574
GCCGACUUUCAAUGGCU	chr3:99569009-99569301(+)$1	292	75	92	13.5574
UGUCCCUCCCCUGGCAG	chr19:45912459-45912728(-)$1	269	153	170	11.2590
UUGAUACAACUUAUUCA	chr2:186659140-186659385(-)$1	245	34	51	9.7982
AUCAUCUCUCUCCUUGG	chr3:99568704-99568988(+)$1	284	117	134	9.7982
UGUCUGGUUUGUGACCU	chr7:141478312-141478615(+)$1	303	260	277	11.9030
AAGGUUUCUUUCCCUUU	chr19:45911825-45912096(-)$1	271	85	102	12.3326
CAUCAAUCUGCCGGCUG	chr3:99569369-99569631(+)$1	262	144	161	12.2579
AGAGAAUGGAAGCCUGU	chr17:44408651-44408936(-)$1	285	258	275	12.0930
CUUCUUCUUCUUGAAGC	chr3:99568176-99568417(+)$1	241	215	232	13.5574
GCUCUUCCUCCUGAACU	chr3:99569629-99569892(+)$1	263	34	51	11.3035
UUGAUACAACUUAUUCA	chr2:186659248-186659494(-)$1	246	143	160	9.7982
CCAGGAAUGUGACUGAA	chr7:141464396-141464686(+)$1	290	52	69	11.9077
AGAGGUUUUGGACUUUA	chr3:99567548-99567808(+)$1	260	85	102	11.9443
GAAGAUUACUAACUUCC	chr7:141478434-141478713(+)$1	279	177	194	12.2659
CUUCUUCUUCUUGAAGC	chr3:99568245-99568495(+)$1	250	146	163	13.5574
AUGCCUUAUGAAGUAUG	chr2:186655215-186655509(-)$1	294	102	119	12.2659

#DB
((((........)))).	chr22:51162458-51162748(+)$1	1	132	149	11.1752
((((........)))))	chr2:186657735-186657997(-)$1	1	197	214	11.9101
((((..........)))	chr17:26937537-26937901(-)$1	1	70	87	9.7982
(((((........))))	chr12:56320825-56321066(-)$1	1	223	240	11.6937
((((........)))))	chr17:55509822-55510161(+)$1	1	141	158	13.5574
((((........)))))	chr3:99569009-99569301(+)$1	1	75	92	13.5574
((((........)))))	chr19:45912459-45912728(-)$1	1	153	170	11.2590
((((..........)))	chr2:186659140-186659385(-)$1	1	34	51	9.7982
((((..........)))	chr3:99568704-99568988(+)$1	1	117	134	9.7982
.(((........))).)	chr7:141478312-141478615(+)$1	1	260	277	11.9030
((((........)))))	chr19:45911825-45912096(-)$1	1	85	102	12.3326
((((........)).))	chr3:99569369-99569631(+)$1	1	144	161	12.2579
((.(........)))))	chr17:44408651-44408936(-)$1	1	258	275	12.0930
((((........)))))	chr3:99568176-99568417(+)$1	1	215	232	13.5574
(.((........)).).	chr3:99569629-99569892(+)$1	1	34	51	11.3035
((((..........)))	chr2:186659248-186659494(-)$1	1	143	160	9.7982
.(((........)))..	chr7:141464396-141464686(+)$1	1	52	69	11.9077
((((........)))))	chr3:99567548-99567808(+)$1	1	85	102	11.9443
((((........)))).	chr7:141478434-141478713(+)$1	1	177	194	12.2659
((((........)))))	chr3:99568245-99568495(+)$1	1	146	163	13.5574
((((........)))).	chr2:186655215-186655509(-)$1	1	102	119	12.2659

#PSSM
e : 0.47	d : 0.19	g : 0.04	f : 0.04	[ : 0.04	= : 0.04	a : 0.04	# : 0.04	i : 0.04	
e : 0.47	d : 0.19	c : 0.09	g : 0.04	f : 0.04	= : 0.04	[ : 0.04	i : 0.04	
e : 0.42	d : 0.14	c : 0.09	b : 0.09	g : 0.04	f : 0.04	= : 0.04	[ : 0.04	i : 0.04	
e : 0.42	d : 0.14	c : 0.09	b : 0.09	g : 0.04	f : 0.04	= : 0.04	a : 0.04	i : 0.04	
q : 0.76	s : 0.19	e : 0.04	
q : 0.80	s : 0.19	
q : 0.80	s : 0.19	
q : 0.80	s : 0.19	
q : 0.80	s : 0.19	
q : 0.80	s : 0.19	
q : 0.80	s : 0.19	
q : 0.80	s : 0.19	
s : 0.19	e : 0.19	d : 0.14	c : 0.09	b : 0.09	g : 0.04	q : 0.04	f : 0.04	= : 0.04	a : 0.04	i : 0.04	
e : 0.23	d : 0.19	s : 0.19	c : 0.09	b : 0.09	g : 0.04	f : 0.04	= : 0.04	i : 0.04	
e : 0.42	d : 0.19	c : 0.09	] : 0.09	g : 0.04	f : 0.04	= : 0.04	i : 0.04	
e : 0.47	d : 0.19	g : 0.04	f : 0.04	] : 0.04	= : 0.04	a : 0.04	4 : 0.04	i : 0.04	
e : 0.47	4 : 0.14	f : 0.09	: : 0.04	g : 0.04	= : 0.04	d : 0.04	3 : 0.04	i : 0.04	

#score	247.7351405408097
#seq	21
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_transcript_m1_run2.txt

#BEAR
!a[dddd!!aooooooa22dddd]a	chr13:48916633-48916951(+)$1	318	136	161	12.4308
!!dddd[cccooooooccc]dddd]	chr7:99947241-99947474(+)$1	233	135	160	13.8296
iii####cccooooooccc333iii	chr11:3059176-3059437(-)$1	261	86	111	15.5482
dd"""cccbboooooobb4444ccc	chr11:67051606-67051868(+)$1	262	87	112	14.5095
dd[bb[ddddoooooodddd]bbdd	chr1:39909064-39909310(+)$1	246	102	127	12.0939
eeee!!ddddooooooddddeeeee	chr19:49965762-49966075(+)$1	313	10	35	12.7762
!dddd[ddddoooooodddd]dddd	chr6:20548753-20549031(+)$1	278	189	214	12.6545
!ffffff[bboooooobb]ffffff	chr9:35707133-35707348(-)$1	215	125	150	12.6443
ccc[bb[cccooooooccc]bb]cc	chr11:59434239-59434523(-)$1	284	96	121	13.4447
ddda"""cccooooooccc333a]d	chr19:46328447-46328691(-)$1	244	4	29	15.3504
eee"""ddddoooooodddd22eee	chr21:47666334-47666598(-)$1	264	140	165	13.1721
gggg[cccbboooooobb22cccgg	chr7:100225290-100225543(-)$1	253	60	85	13.7513
ffff####bboooooobb4444fff	chrX:153197492-153197795(-)$1	303	154	179	14.0946
g[ccceeeeeooooooeeeee]ccc	chr14:23792550-23792786(+)$1	236	196	221	12.3528
ccccceeeeeooooooeeeee333c	chr5:149754940-149755208(+)$1	268	153	178	12.4037
==========oooooo=========	chr9:131456819-131457040(+)$1	221	89	114	14.1524
gggggg!!bboooooobb]gggggg	chr1:237001653-237001924(+)$1	271	235	260	13.8042
hffffff[bboooooobbffffff4	chr6:160479861-160480108(+)$1	247	28	53	12.1371
ffffff!!bboooooobb4444fff	chr22:22328628-22328854(-)$1	226	46	71	13.5430
"""gggggggooooooggggggg33	chr19:1011966-1012271(-)$1	305	27	52	13.4023
dd####ddddoooooodddddddde	chr1:19449228-19449482(-)$1	254	104	129	13.1103
eedddd[aaooooooa]a]dddd]e	chr3:47039930-47040155(+)$1	225	191	216	11.2289
[iiiiiiiiiooooooiiiiiiiii	chr3:183883889-183884154(+)$1	265	94	119	13.5190
!ccc"""cccooooooccc333ccc	chr1:32797717-32797940(+)$1	223	115	140	15.8313
ccc$$$$$bboooooobb4444ccc	chrX:122801910-122802164(-)$1	254	16	41	13.7449
'ccc"""cccooooooccc22ccce	chr4:1976977-1977228(+)$1	251	147	172	14.4643
bb[gggggggooooooggggggg]b	chr22:43227451-43227683(-)$1	232	23	48	12.6045
eee!!a!!bboooooobb22a22ee	chr1:32627465-32627742(+)$1	277	145	170	13.6897
ccc[ffffffooooooffffff]cc	chr22:38887942-38888217(-)$1	275	190	215	12.0846
"""ccc[cccooooooccc22ccc4	chr17:78354598-78354850(+)$1	252	217	242	14.6133
fffff"""bboooooobb22fffff	chr12:57037527-57037772(-)$1	245	175	200	13.2706
fffff[ddddooooooddddfffff	chr12:56749125-56749416(-)$1	291	210	235	12.2138
dddd!!ddddoooooodddd333dd	chr17:40647565-40647832(+)$1	267	168	193	13.4222
$$$$bb[cccooooooccc]bbfff	chr2:96963273-96963537(-)$1	264	62	87	12.6333
ffff"""cccooooooccc333fff	chr10:75526468-75526704(+)$1	236	152	177	15.0455
dd[gggggggooooooggggggg33	chr1:27094341-27094588(+)$1	247	142	167	13.2763
dd!!ffffffooooooffffffddd	chr15:58971279-58971583(-)$1	304	64	89	12.1480
"""ddddcccooooooccc]dddd]	chr20:62303826-62304076(+)$1	250	185	210	13.6366
bb####ddddoooooodddd4444b	chr22:38897033-38897285(-)$1	252	165	190	12.9088
dddd[cccbboooooobb22cccdd	chr22:19906337-19906601(-)$1	264	152	177	13.3615
ee[ccc[cccooooooccc]ccc]e	chr22:21167545-21167767(-)$1	222	168	193	14.6057
cc[a[eeeeeooooooeeeeeaccc	chr16:15012376-15012677(+)$1	301	97	122	12.6747
"iiiiiiiiiooooooiiiiiiiii	chr17:80016279-80016557(-)$1	278	183	208	13.5147
dddd"""cccooooooccc22dddd	chr19:1042640-1042876(+)$1	236	182	207	14.4833
!a[dddd[bboooooobb]dddd]a	chr16:72138187-72138475(+)$1	288	101	126	13.1353
"""ccc[cccooooooccc]cccdd	chr11:62489971-62490246(-)$1	275	56	81	14.6090
gggggg[cccooooooccc]ggggg	chr14:94517497-94517813(-)$1	316	179	204	14.4328
eeee"""ddddooooooddddeeee	chr14:23791344-23791604(+)$1	260	186	211	11.4862
[a[dddd[bboooooobb333dddd	chr19:55743342-55743564(-)$1	222	111	136	13.8209
dd[a"""cccooooooccc]a]ddd	chr21:45734133-45734369(+)$1	236	144	169	15.1495
ggg[ffffffooooooffffffggg	chr3:42685331-42685597(+)$1	266	16	41	12.1484
:eeeee[cccooooooccceeeee:	chr17:42401905-42402151(-)$1	246	6	31	11.4211
d[a!!eeeeeooooooeeeee]a]d	chr16:85691013-85691316(+)$1	303	214	239	12.6285
eeee"""cccooooooccceeeee]	chrX:48664672-48664972(+)$1	300	138	163	14.2061

#otherMatches

#Seq PSSM
AAUCUGUAUCUUUAUUGCAGCAGUU	chr13:48916633-48916951(+)$1	318	136	161	12.4308
aaaggcugugugcauccgcugucua	chr7:99947241-99947474(+)$1	233	135	160	13.8296
CUUGCCACAGAGCCACUUGAGAAAG	chr11:3059176-3059437(-)$1	261	86	111	15.5482
GAUCAGGAGCUCUACCGCAACUUCC	chr11:67051606-67051868(+)$1	262	87	112	14.5095
GAAUGGAGAGCCAGCUUUCUGCAUC	chr1:39909064-39909310(+)$1	246	102	127	12.0939
ACCAACUUGCUAGAGUGCAAUGGUG	chr19:49965762-49966075(+)$1	313	10	35	12.7762
AGAUCuauaauauauuuuauugauu	chr6:20548753-20549031(+)$1	278	189	214	12.6545
AUCUCUGCCAAGACAAUGUUAGAGA	chr9:35707133-35707348(-)$1	215	125	150	12.6443
AUUGUCCUCUGGAUGAAGAUGAAGA	chr11:59434239-59434523(-)$1	284	96	121	13.4447
CCUCCCCGGCUCCACUGCCCAAGAA	chr19:46328447-46328691(-)$1	244	4	29	15.3504
UUGGGGUCAGGAAUCACUGAGACAG	chr21:47666334-47666598(-)$1	264	140	165	13.1721
GAGGAGCAGAGCCUGAUCAGUGCCC	chr7:100225290-100225543(-)$1	253	60	85	13.7513
GGGGCAAGACCUGGACGUGCUACCC	chrX:153197492-153197795(-)$1	303	154	179	14.0946
AAUUAUGUUUUAUAUUGAGCAGUAA	chr14:23792550-23792786(+)$1	236	196	221	12.3528
CCCACAGCUGUGGCCCCGGCUCAGG	chr5:149754940-149755208(+)$1	268	153	178	12.4037
UUUUCUUUCAGGAGGAUGAAGGAGA	chr9:131456819-131457040(+)$1	221	89	114	14.1524
AAGAAGGACAGGUGAGUGGUUUCUU	chr1:237001653-237001924(+)$1	271	235	260	13.8042
AUACGAGGCAUAAAUUUGUUUGUAU	chr6:160479861-160480108(+)$1	247	28	53	12.1371
CACUGGGACCUUUGCUGGCCAGCCA	chr22:22328628-22328854(-)$1	226	46	71	13.5430
AGGGCCCAGGGGGUGGCCUGGGCGG	chr19:1011966-1012271(-)$1	305	27	52	13.4023
GGUUACAGCCAGCUCAGGCUCCGCC	chr1:19449228-19449482(-)$1	254	104	129	13.1103
GCGGUGCGCUUCCCUGACUCACCUG	chr3:47039930-47040155(+)$1	225	191	216	11.2289
UGGCUCUAUCAUGAAGGGUGGGGCC	chr3:183883889-183884154(+)$1	265	94	119	13.5190
GGAGAAGAAAGGUGGGUUUGGGUUC	chr1:32797717-32797940(+)$1	223	115	140	15.8313
UUGCAUUAUGGAUGAACACAAACGA	chrX:122801910-122802164(-)$1	254	16	41	13.7449
AAGGUAAGGCUGUGGCGCCCUCCUU	chr4:1976977-1977228(+)$1	251	147	172	14.4643
UUUCUCGCCUUGUUUCAGGUGAGUG	chr22:43227451-43227683(-)$1	232	23	48	12.6045
CUGCCGAGGGAAAAACCCACCCCCA	chr1:32627465-32627742(+)$1	277	145	170	13.6897
AUGUAUCUUUUGGUUUAAAGAUUCG	chr22:38887942-38888217(-)$1	275	190	215	12.0846
CUCAGUUAAGAACCUGCUUUCGCUU	chr17:78354598-78354850(+)$1	252	217	242	14.6133
UUUCCAAACCUAAUAUGGGAGGAAA	chr12:57037527-57037772(-)$1	245	175	200	13.2706
UUAGGGUUGACAGCGUUCAGCCUAA	chr12:56749125-56749416(-)$1	291	210	235	12.2138
AGUAAGAGGACUUCCUUCCUAUAUG	chr17:40647565-40647832(+)$1	267	168	193	13.4222
AUCUUUGUCCACUACAGGAGGAAAG	chr2:96963273-96963537(-)$1	264	62	87	12.6333
GAGUAUCGGGCAACCUCCUCUAACU	chr10:75526468-75526704(+)$1	236	152	177	15.0455
GACUCAGGUGAGUGGGCGCCUGACA	chr1:27094341-27094588(+)$1	247	142	167	13.2763
AAAUUAAAUUGUCAAGAAUUUGUUG	chr15:58971279-58971583(-)$1	304	64	89	12.1480
UUCUGGCCUUUUUGUCAAGAGCCAC	chr20:62303826-62304076(+)$1	250	185	210	13.6366
GUGUUUUAAUGUACAGAUUAUUGAA	chr22:38897033-38897285(-)$1	252	165	190	12.9088
UGGGAGGCCUGAUCCAAGAUGCCCC	chr22:19906337-19906601(-)$1	264	152	177	13.3615
AAUUGCUAGUGGUGAAACUUGUAUU	chr22:21167545-21167767(-)$1	222	168	193	14.6057
UGUGUGGGGCGGCCCAGCCCUCCAG	chr16:15012376-15012677(+)$1	301	97	122	12.6747
CCCAGUGGGGCUGCUCCCCUGCUGG	chr17:80016279-80016557(-)$1	278	183	208	13.5147
GAGGUACGAGGCCCCACUCAUCCUC	chr19:1042640-1042876(+)$1	236	182	207	14.4833
UUGGCUUGUGUUUCCUCGGGGGUGG	chr16:72138187-72138475(+)$1	288	101	126	13.1353
UCUAGGUGAAGAUGAAUUCUCUUAC	chr11:62489971-62490246(-)$1	275	56	81	14.6090
CUGCUUUGAGCUGUCUCUCCAAGCA	chr14:94517497-94517813(-)$1	316	179	204	14.4328
GCCCGGGUUCUCGGGUUGGAAGGGU	chr14:23791344-23791604(+)$1	260	186	211	11.4862
UCAGCCUCCAGGUGAAUGAAUGGGC	chr19:55743342-55743564(-)$1	222	111	136	13.8209
CUGUGGGGGUGGCGAGGCCAGGAGC	chr21:45734133-45734369(+)$1	236	144	169	15.1495
GUAUCUGAGUGGGAAAAUUUAGUGU	chr3:42685331-42685597(+)$1	266	16	41	12.1484
CGGCGGAGCCGGUAUGGGCCCGCCU	chr17:42401905-42402151(-)$1	246	6	31	11.4211
AGGAAGGAGGGAUGAGCCUUCACGU	chr16:85691013-85691316(+)$1	303	214	239	12.6285
CAUGAAUGAGGGAGAACUCCGUGUC	chrX:48664672-48664972(+)$1	300	138	163	14.2061

#DB
.(.((((..(......)..)))).)	chr13:48916633-48916951(+)$1	1	136	161	12.4308
..((((.(((......))).)))).	chr7:99947241-99947474(+)$1	1	135	160	13.8296
(((....(((......)))...)))	chr11:3059176-3059437(-)$1	1	86	111	15.5482
((...(((((......))....)))	chr11:67051606-67051868(+)$1	1	87	112	14.5095
((.((.((((......)))).))))	chr1:39909064-39909310(+)$1	1	102	127	12.0939
((((..((((......)))))))))	chr19:49965762-49966075(+)$1	1	10	35	12.7762
.((((.((((......)))).))))	chr6:20548753-20549031(+)$1	1	189	214	12.6545
.((((((.((......)).))))))	chr9:35707133-35707348(-)$1	1	125	150	12.6443
(((.((.(((......))).)).))	chr11:59434239-59434523(-)$1	1	96	121	13.4447
((((...(((......)))...).)	chr19:46328447-46328691(-)$1	1	4	29	15.3504
(((...((((......))))..)))	chr21:47666334-47666598(-)$1	1	140	165	13.1721
((((.(((((......))..)))))	chr7:100225290-100225543(-)$1	1	60	85	13.7513
((((....((......))....)))	chrX:153197492-153197795(-)$1	1	154	179	14.0946
(.((((((((......))))).)))	chr14:23792550-23792786(+)$1	1	196	221	12.3528
((((((((((......)))))...)	chr5:149754940-149755208(+)$1	1	153	178	12.4037
((((((((((......)))))))))	chr9:131456819-131457040(+)$1	1	89	114	14.1524
((((((..((......)).))))))	chr1:237001653-237001924(+)$1	1	235	260	13.8042
(((((((.((......)))))))).	chr6:160479861-160480108(+)$1	1	28	53	12.1371
((((((..((......))....)))	chr22:22328628-22328854(-)$1	1	46	71	13.5430
...(((((((......)))))))..	chr19:1011966-1012271(-)$1	1	27	52	13.4023
((....((((......)))))))))	chr1:19449228-19449482(-)$1	1	104	129	13.1103
((((((.((......).).)))).)	chr3:47039930-47040155(+)$1	1	191	216	11.2289
.(((((((((......)))))))))	chr3:183883889-183884154(+)$1	1	94	119	13.5190
.(((...(((......)))...)))	chr1:32797717-32797940(+)$1	1	115	140	15.8313
(((.....((......))....)))	chrX:122801910-122802164(-)$1	1	16	41	13.7449
.(((...(((......)))..))))	chr4:1976977-1977228(+)$1	1	147	172	14.4643
((.(((((((......))))))).)	chr22:43227451-43227683(-)$1	1	23	48	12.6045
(((..(..((......))..)..))	chr1:32627465-32627742(+)$1	1	145	170	13.6897
(((.((((((......)))))).))	chr22:38887942-38888217(-)$1	1	190	215	12.0846
...(((.(((......)))..))).	chr17:78354598-78354850(+)$1	1	217	242	14.6133
(((((...((......))..)))))	chr12:57037527-57037772(-)$1	1	175	200	13.2706
(((((.((((......)))))))))	chr12:56749125-56749416(-)$1	1	210	235	12.2138
((((..((((......))))...))	chr17:40647565-40647832(+)$1	1	168	193	13.4222
....((.(((......))).)))))	chr2:96963273-96963537(-)$1	1	62	87	12.6333
((((...(((......)))...)))	chr10:75526468-75526704(+)$1	1	152	177	15.0455
((.(((((((......)))))))..	chr1:27094341-27094588(+)$1	1	142	167	13.2763
((..((((((......)))))))))	chr15:58971279-58971583(-)$1	1	64	89	12.1480
...(((((((......))).)))).	chr20:62303826-62304076(+)$1	1	185	210	13.6366
((....((((......))))....)	chr22:38897033-38897285(-)$1	1	165	190	12.9088
((((.(((((......))..)))))	chr22:19906337-19906601(-)$1	1	152	177	13.3615
((.(((.(((......))).))).)	chr22:21167545-21167767(-)$1	1	168	193	14.6057
((.(.(((((......)))))))))	chr16:15012376-15012677(+)$1	1	97	122	12.6747
.(((((((((......)))))))))	chr17:80016279-80016557(-)$1	1	183	208	13.5147
((((...(((......)))..))))	chr19:1042640-1042876(+)$1	1	182	207	14.4833
.(.((((.((......)).)))).)	chr16:72138187-72138475(+)$1	1	101	126	13.1353
...(((.(((......))).)))))	chr11:62489971-62490246(-)$1	1	56	81	14.6090
((((((.(((......))).)))))	chr14:94517497-94517813(-)$1	1	179	204	14.4328
((((...((((......))))))))	chr14:23791344-23791604(+)$1	1	186	211	11.4862
.(.((((.((......))...))))	chr19:55743342-55743564(-)$1	1	111	136	13.8209
((.(...(((......))).).)))	chr21:45734133-45734369(+)$1	1	144	169	15.1495
(((.((((((......)))))))))	chr3:42685331-42685597(+)$1	1	16	41	12.1484
.(((((.(((......)))))))).	chr17:42401905-42402151(-)$1	1	6	31	11.4211
(.(..(((((......))))).).)	chr16:85691013-85691316(+)$1	1	214	239	12.6285
((((...(((......)))))))).	chrX:48664672-48664972(+)$1	1	138	163	14.2061

#PSSM
d : 0.20	e : 0.12	! : 0.11	c : 0.09	g : 0.09	f : 0.09	" : 0.09	[ : 0.03	b : 0.03	i : 0.01	= : 0.01	h : 0.01	' : 0.01	$ : 0.01	: : 0.01	
d : 0.20	e : 0.14	f : 0.12	c : 0.12	g : 0.07	" : 0.07	a : 0.05	i : 0.05	[ : 0.03	b : 0.03	! : 0.01	= : 0.01	$ : 0.01	
[ : 0.16	d : 0.12	f : 0.12	c : 0.12	e : 0.11	" : 0.09	g : 0.07	i : 0.05	# : 0.03	= : 0.01	$ : 0.01	! : 0.01	a : 0.01	
d : 0.18	f : 0.12	c : 0.12	g : 0.11	e : 0.07	# : 0.05	[ : 0.05	a : 0.05	! : 0.05	" : 0.03	i : 0.03	$ : 0.03	b : 0.01	= : 0.01	
" : 0.18	f : 0.14	d : 0.12	c : 0.09	g : 0.09	# : 0.07	! : 0.07	b : 0.05	[ : 0.05	i : 0.03	= : 0.01	$ : 0.01	e : 0.01	
" : 0.18	d : 0.11	c : 0.11	f : 0.11	e : 0.09	g : 0.09	# : 0.07	[ : 0.05	! : 0.03	b : 0.03	i : 0.03	= : 0.01	$ : 0.01	a : 0.01	
d : 0.22	[ : 0.16	" : 0.16	f : 0.09	e : 0.07	c : 0.05	! : 0.05	g : 0.05	# : 0.03	i : 0.03	= : 0.01	$ : 0.01	
c : 0.37	d : 0.16	! : 0.07	[ : 0.07	e : 0.07	g : 0.05	f : 0.05	i : 0.03	# : 0.01	= : 0.01	a : 0.01	$ : 0.01	" : 0.01	
c : 0.31	b : 0.24	d : 0.16	e : 0.07	g : 0.05	f : 0.05	i : 0.03	! : 0.01	= : 0.01	a : 0.01	
c : 0.31	b : 0.24	d : 0.16	e : 0.07	g : 0.05	f : 0.05	i : 0.03	a : 0.01	= : 0.01	o : 0.01	
o : 0.98	d : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.98	a : 0.01	
c : 0.31	b : 0.24	d : 0.14	e : 0.07	g : 0.05	f : 0.05	i : 0.03	a : 0.01	= : 0.01	] : 0.01	o : 0.01	
c : 0.31	b : 0.24	d : 0.16	e : 0.07	g : 0.05	f : 0.05	i : 0.03	2 : 0.01	= : 0.01	a : 0.01	
c : 0.31	d : 0.16	2 : 0.09	4 : 0.07	] : 0.07	e : 0.07	f : 0.07	g : 0.05	i : 0.03	= : 0.01	3 : 0.01	
d : 0.22	] : 0.14	2 : 0.12	e : 0.11	3 : 0.09	f : 0.09	4 : 0.07	g : 0.07	i : 0.03	= : 0.01	
d : 0.12	e : 0.12	f : 0.12	3 : 0.11	4 : 0.09	g : 0.09	2 : 0.07	c : 0.07	] : 0.03	b : 0.03	i : 0.03	a : 0.03	= : 0.01	
d : 0.16	f : 0.12	3 : 0.11	c : 0.11	4 : 0.09	g : 0.09	e : 0.07	b : 0.05	] : 0.05	2 : 0.03	i : 0.03	= : 0.01	a : 0.01	
d : 0.20	c : 0.20	f : 0.14	g : 0.11	e : 0.09	i : 0.05	] : 0.03	a : 0.03	3 : 0.03	b : 0.01	= : 0.01	2 : 0.01	4 : 0.01	
d : 0.22	c : 0.16	f : 0.14	] : 0.12	e : 0.11	g : 0.07	i : 0.05	3 : 0.05	= : 0.01	4 : 0.01	
d : 0.20	c : 0.14	e : 0.14	f : 0.12	g : 0.07	] : 0.05	i : 0.05	a : 0.03	4 : 0.03	3 : 0.03	b : 0.03	= : 0.01	: : 0.01	

#score	723.2218944032734
#seq	54
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_UTR_m1_run2.txt

#BEAR
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:1257376-1257685(+)$1	309	18	53	41.8679
gggg[bb^^^^^^^^^^^^^^^^^^^^^bb]gggg	chr17:26900105-26900404(-)$1	299	113	148	36.5613
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:14203539-14203833(-)$1	294	82	117	43.0519
#ccc!!bb^^^^^^^^^^^^^^^^^^^bb]ccc33	chr20:57466476-57466744(+)$1	268	97	132	35.0681
eeee^^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr11:63765247-63765498(+)$1	251	174	209	40.5284
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr5:10353801-10354037(+)$1	236	124	159	42.9071
cccbb^^^^^^^^^^^^^^^^^^^^^bb]ccc]ee	chr17:2497084-2497376(+)$1	292	133	168	36.2730
eeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee::	chr19:56671600-56671924(+)$1	324	167	202	38.2686
fffdddd^^^^^^^^^^^^^^^^^^^^^dddd22f	chr13:46701060-46701384(-)$1	324	50	85	35.9259
=====^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:183889111-183889351(+)$1	240	182	217	42.6070
dddddd^^^^^^^^^^^^^^^^^^^^^^dddd]dd	chr3:160117562-160117828(+)$1	266	167	202	37.7778
&dddd^^^^^^^^^^^^^^^^^^^^^^^^dddd77	chr11:118915663-118915911(-)$1	248	143	178	39.3340
gggggg^^^^^^^^^^^^^^^^^^ggggggg0000	chr11:309176-309439(+)$1	263	175	210	31.5405
"dddd^^^^^^^^^^^^^^^^^^^^^^^dddd444	chr19:11032572-11032810(+)$1	238	18	53	40.3410
eeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr5:10307858-10308119(-)$1	261	142	177	42.4938
ee::ccc^^^^^^^^^^^^^^^^^^^^^ccc:HHH	chr19:12907619-12907868(-)$1	249	147	182	32.7760
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chrX:153214184-153214448(-)$1	264	81	116	42.5780
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:54377852-54378075(+)$1	223	159	194	42.8171
[dddd^^^^^^^^^^^^^^^^^^^^^^^ddddddd	chr7:143087764-143088027(+)$1	263	105	140	39.5311
gggggg^^^^^^^^^^^^^^^^^^^^^ggggggg:	chr11:57585395-57585677(+)$1	282	57	92	36.0588
=====^^^^^^^^^^^^^^^^^^^^^^^^^=====	chr19:47223136-47223425(-)$1	289	138	173	41.0063
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^c	chr5:10353837-10354096(+)$1	259	88	123	42.9071
ggggg^^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr19:39330799-39331130(-)$1	331	85	120	39.3231
$$$$$bb^^^^^^^^^^^^^^^^^^^^^bb66666	chr5:61602140-61602389(+)$1	249	61	96	35.0076
!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc22	chrX:122994062-122994376(+)$1	314	141	176	41.3623
[eeeee^^^^^^^^^^^^^^^^^^^^eeeee]ggg	chr11:73964633-73964877(+)$1	244	133	168	35.5913
fffff^^^^^^^^^^^^^^^^^^^^^ffffff:::	chr10:102123135-102123397(+)$1	262	209	244	33.7174
iiiii^^^^^^^^^^^^^^^^^^^^^^^^^^^^ii	chr12:6857147-6857419(-)$1	272	164	199	41.8076
ee[bb^^^^^^^^^^^^^^^^^^^^^^^bb]eeee	chr15:89442287-89442603(-)$1	316	93	128	38.6158
!dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:47894298-47894593(-)$1	295	125	160	42.7766
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr1:153923900-153924198(-)$1	298	52	87	41.1809
ggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:153671363-153671625(+)$1	262	43	78	42.4419
[eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^e	chr16:3026860-3027143(-)$1	283	164	199	41.2080
!!ccc^^^^^^^^^^^^^^^^^^^^^ccc]ddddd	chr10:102106984-102107227(+)$1	243	81	116	37.1575
ddddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:41812645-41812877(+)$1	232	80	115	42.2640
ccccc^^^^^^^^^^^^^^^^^^^ccc]cccbb]f	chr1:150601847-150602166(-)$1	319	224	259	33.9192
=======^^^^^^^^^^^^^^^^^^^^^=======	chr15:74923848-74924160(-)$1	312	258	293	37.3708
[ccc[a^^^^^^^^^^^^^^^^^^^^^a]ccc]cc	chr19:54377719-54377980(+)$1	261	206	241	38.7235
dddd^^^^^^^^^^^^^^^^^^^^^^^^ddddccc	chr19:40487113-40487378(+)$1	265	94	129	39.4577
::ccc^^^^^^^^^^^^^^^^^^^^^^^ccc::::	chr15:41571905-41572201(+)$1	296	169	204	35.2253
eeeee^^^^^^^^^^^^^^^^^^^^^^eeeeeEEE	chr4:77996894-77997127(-)$1	233	94	129	35.4162
ee[bb^^^^^^^^^^^^^^^^^^^^^^^^bb333e	chr8:11695930-11696191(+)$1	261	72	107	39.9277
eeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee::	chr12:50156585-50156856(+)$1	271	93	128	38.2686
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr22:42301904-42302155(+)$1	251	182	217	41.8679
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:72491361-72491657(-)$1	296	178	213	41.8679
gggg^^^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr12:58141960-58142270(-)$1	310	97	132	40.2076
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^dd	chr1:155260168-155260470(-)$1	302	209	244	42.1443
'dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr19:7989773-7990092(-)$1	319	122	157	40.8883
"ccc^^^^^^^^^^^^^^^^^^^^^^^^ccc]ccc	chr2:223436411-223436678(-)$1	267	119	154	40.3044
!!bb^^^^^^^^^^^^^^^^^^^^^^^^^^^bb22	chr3:38495342-38495607(+)$1	265	78	113	40.8210
!eeeee^^^^^^^^^^^^^^^^^^^^^^eeeee22	chr5:172378279-172378532(+)$1	253	109	144	38.3225
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^dddd]	chr17:29422021-29422292(+)$1	271	112	147	40.9315
!!ccc^^^^^^^^^^^^^^^^^^ccc22eeeee::	chr12:49332513-49332790(-)$1	277	242	277	31.5943
[bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]h	chr11:119205552-119205839(+)$1	287	110	145	40.3240
hhhhh^^^^^^^^^^^^^^^^^^^^^^^hhhhhhh	chr1:227179496-227179801(-)$1	305	164	199	36.1033
!dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr19:47278131-47278434(-)$1	303	171	206	42.5374
!!bb^^^^^^^^^^^^^^^^^^^^^^^^bb22ccc	chr9:131909684-131909984(+)$1	300	132	167	39.2017
[dddd^^^^^^^^^^^^^^^^^^^^^^^ddddddd	chr7:143087827-143088100(+)$1	273	42	77	39.5311
iiiiii^^^^^^^^^^^^^^^^^^^^^^iiiiiii	chr22:21805139-21805386(+)$1	247	179	214	37.8850

#otherMatches

#Seq PSSM
uuuuuuucuuuucuucuuuuuuauuauuuuuuucu	chr19:1257376-1257685(+)$1	309	18	53	41.8679
CCUCUUCCAGCUCCCACAAUUUUCCCAUGAUGAGG	chr17:26900105-26900404(-)$1	299	113	148	36.5613
ACAGAAACACCAGcugcucccccucauccccuuca	chr19:14203539-14203833(-)$1	294	82	117	43.0519
UCGGUCCGACCGACAcccuccccuucccgcccguc	chr20:57466476-57466744(+)$1	268	97	132	35.0681
GGCCACCCACACUUCAUCUGCUCCCUCAUAGGCCC	chr11:63765247-63765498(+)$1	251	174	209	40.5284
CGGCUCCCUCCUCCUCUCCCCUCCCUCUUUCCCCG	chr5:10353801-10354037(+)$1	236	124	159	42.9071
uccccucucccucccccucccccGCCGGUGGAUGG	chr17:2497084-2497376(+)$1	292	133	168	36.2730
caggucucaccucagccccccccuucucccugauu	chr19:56671600-56671924(+)$1	324	167	202	38.2686
GGAGGGGAAACAUCACACCUGCCCUAAACCCUGUU	chr13:46701060-46701384(-)$1	324	50	85	35.9259
GGCCUGAAACAUUUCUUUUCUUUCUUUUUUCCUCC	chr3:183889111-183889351(+)$1	240	182	217	42.6070
CGGGCGCCACUUUUCCAAGCUACUCAAAUGUCUCG	chr3:160117562-160117828(+)$1	266	167	202	37.7778
CCCCAUUCCCCAUCCAGCUCCUUUCCCCCUGGGUU	chr11:118915663-118915911(-)$1	248	143	178	39.3340
CGCUUUUCUACAAUGGCAUUCAAUAAAGUGUAUAU	chr11:309176-309439(+)$1	263	175	210	31.5405
CGCCGUCCCCACCCUAACCCCCACCUCCCGGCCCU	chr19:11032572-11032810(+)$1	238	18	53	40.3410
gccuuccuucccuuccCCGACUUUGCAGAUUUCUC	chr5:10307858-10308119(-)$1	261	142	177	42.4938
AGAAGCUGAAUAGUGACGCCCUCCCCCAAGCCCAC	chr19:12907619-12907868(-)$1	249	147	182	32.7760
UCUGGUUCUGUUUUCUUUUCUUCCCCUUGUGUUUC	chrX:153214184-153214448(-)$1	264	81	116	42.5780
cucuuuuucuuuucuuuuuuuuuuuuuuuuuuuuu	chr19:54377852-54378075(+)$1	223	159	194	42.8171
UCUAGCCCCUCCCAUUUCCAACCCCUCCCUAGCAU	chr7:143087764-143088027(+)$1	263	105	140	39.5311
GUGCACAACCCACCACCCCCUUUACUCGUGCAUUA	chr11:57585395-57585677(+)$1	282	57	92	36.0588
UGCUCCCCCAUCCCCCAUCCUCCCAGACCUGGGCA	chr19:47223136-47223425(-)$1	289	138	173	41.0063
CGGCUCCCUCCUCCUCUCCCCUCCCUCUUUCCCCG	chr5:10353837-10354096(+)$1	259	88	123	42.9071
CCUCCCUCUCUUUCCUUCCCACCCCCCAGGAGGGC	chr19:39330799-39331130(-)$1	331	85	120	39.3231
cAAccgcucccccucccacaccuaccccgcccccu	chr5:61602140-61602389(+)$1	249	61	96	35.0076
uccccucuucuuuuccccuccacuucccucGGGCC	chrX:122994062-122994376(+)$1	314	141	176	41.3623
CCAGGGCUCCCCUGCUCCUUUCCCUUCCCUGUACU	chr11:73964633-73964877(+)$1	244	133	168	35.5913
CAAUAAAAACAACUUUCACUUCUUCCUAUUGUAAU	chr10:102123135-102123397(+)$1	262	209	244	33.7174
AAAGAAUCUUCCCUACACCCUUCUCUGCCUUUAUU	chr12:6857147-6857419(-)$1	272	164	199	41.8076
GGCAGCACCACCACACAGUCACCCCUCCCUCCCUC	chr15:89442287-89442603(-)$1	316	93	128	38.6158
CCUGUUCCCCUCUCCCUUCCCUCCUCCCAUGUCAC	chr3:47894298-47894593(-)$1	295	125	160	42.7766
GCAGGACUUCAUUCACCUCUCAGCCACCCAUCCCU	chr1:153923900-153924198(-)$1	298	52	87	41.1809
AGUUGCAUUCCUCCCCCCUAAUUUAUUCUAAUUUA	chrX:153671363-153671625(+)$1	262	43	78	42.4419
AGUGGCACCCCCAUCCCAGUCCCAGCCUACUUCCG	chr16:3026860-3027143(-)$1	283	164	199	41.2080
UUGCCAGCUCUAGCCUUUAAAUUCCCGGCUCGGGG	chr10:102106984-102107227(+)$1	243	81	116	37.1575
CCUGUUCUUCCUACCUUCUUCCUUUUUGACUAAAU	chr19:41812645-41812877(+)$1	232	80	115	42.2640
CCCAGAAACAAGAAGAAGAGAACCCUGCGGAGGAG	chr1:150601847-150602166(-)$1	319	224	259	33.9192
CUGGGCUUUGAACCUUUUACAUUUGUCCAGUCUAG	chr15:74923848-74924160(-)$1	312	258	293	37.3708
UGCAUCUUCUUCCUUCCCUUUCCUCUUGCUGUUUC	chr19:54377719-54377980(+)$1	261	206	241	38.7235
AGUGACCCUUCCCUUCCCUCCACCACACCACUCAG	chr19:40487113-40487378(+)$1	265	94	129	39.4577
AAGCCUCAAAAUCUCCUCUGUUCUACUUGGCACCA	chr15:41571905-41572201(+)$1	296	169	204	35.2253
CCUCCCCCCCUUUCACCAUUUCCCCUCGGAGGCGC	chr4:77996894-77997127(-)$1	233	94	129	35.4162
GCCACUACUCCCCCAUCUACCUGUCGUUUGUCAUG	chr8:11695930-11696191(+)$1	261	72	107	39.9277
AAGUGACCAUCCAGCCUUUCCCAAUUAGACUUCCU	chr12:50156585-50156856(+)$1	271	93	128	38.2686
CAUGCCCUCCCCUUUUUAUACGAAUGUUUUCUACC	chr22:42301904-42302155(+)$1	251	182	217	41.8679
UGCAGCAAACACUCCACCCUCCACCUUCCAUUUUC	chr15:72491361-72491657(-)$1	296	178	213	41.8679
UUAAUGACAUUCCCCUCCCACCUCUCCUUUUGAGG	chr12:58141960-58142270(-)$1	310	97	132	40.2076
UCCUCUCUUCUCUAUUCCUGACCCUCCCUACCUGA	chr1:155260168-155260470(-)$1	302	209	244	42.1443
CGUGCCUUUAUCCGCCCUGUCCCUUCCUCUCUGCG	chr19:7989773-7990092(-)$1	319	122	157	40.8883
CAGGUGUCCCUUUCUCCUCCCCUAGUGUCCUUAAG	chr2:223436411-223436678(-)$1	267	119	154	40.3044
UCGGUUCAGCUCCCCUCCCCCCCACCCCUCCCCCC	chr3:38495342-38495607(+)$1	265	78	113	40.8210
CUUCUGCCCCAUCCCUUCCUGCCCAACCUAGAACC	chr5:172378279-172378532(+)$1	253	109	144	38.3225
acgcccccuuucccucucccccucccgcucggcgc	chr17:29422021-29422292(+)$1	271	112	147	40.9315
CAAUCCCUAAUUGCUGUCCUGAUGAUGAGUCAUUC	chr12:49332513-49332790(-)$1	277	242	277	31.5943
CUCCACUUCCGUCUUACCCACUUCUUCCUCAGAUU	chr11:119205552-119205839(+)$1	287	110	145	40.3240
UGCCUUCUCCUCUCUCCCUUCUCUUCUCAGGCAGG	chr1:227179496-227179801(-)$1	305	164	199	36.1033
CCCCUAUUCCCUCCACAAUAACAGAAACACUCCCA	chr19:47278131-47278434(-)$1	303	171	206	42.5374
CCCAUCCCCUCCCUCUGUUCGUCCCGUUUGAUGAG	chr9:131909684-131909984(+)$1	300	132	167	39.2017
UCUAGCCCCUCCCAUUUCCAACCCCUCCCUAGCAU	chr7:143087827-143088100(+)$1	273	42	77	39.5311
GGGAGCCUCUCUACCCCACCCAUCACUAGCUUCCC	chr22:21805139-21805386(+)$1	247	179	214	37.8850

#DB
(((((..............................	chr19:1257376-1257685(+)$1	1	18	53	41.8679
((((.((.....................)).))))	chr17:26900105-26900404(-)$1	1	113	148	36.5613
.(((...............................	chr19:14203539-14203833(-)$1	1	82	117	43.0519
.(((..((...................)).)))..	chr20:57466476-57466744(+)$1	1	97	132	35.0681
((((..........................)))))	chr11:63765247-63765498(+)$1	1	174	209	40.5284
.(((..............................)	chr5:10353801-10354037(+)$1	1	124	159	42.9071
(((((.....................)).))).))	chr17:2497084-2497376(+)$1	1	133	168	36.2730
((((........................)))))..	chr19:56671600-56671924(+)$1	1	167	202	38.2686
(((((((.....................))))..)	chr13:46701060-46701384(-)$1	1	50	85	35.9259
(((((..............................	chr3:183889111-183889351(+)$1	1	182	217	42.6070
((((((......................)))).))	chr3:160117562-160117828(+)$1	1	167	202	37.7778
.((((........................))))..	chr11:118915663-118915911(-)$1	1	143	178	39.3340
((((((..................)))))))....	chr11:309176-309439(+)$1	1	175	210	31.5405
.((((.......................))))...	chr19:11032572-11032810(+)$1	1	18	53	40.3410
((((...............................	chr5:10307858-10308119(-)$1	1	142	177	42.4938
))..(((.....................))).)))	chr19:12907619-12907868(-)$1	1	147	182	32.7760
.((((.............................)	chrX:153214184-153214448(-)$1	1	81	116	42.5780
.((((..............................	chr19:54377852-54378075(+)$1	1	159	194	42.8171
.((((.......................)))))))	chr7:143087764-143088027(+)$1	1	105	140	39.5311
((((((.....................))))))).	chr11:57585395-57585677(+)$1	1	57	92	36.0588
(((((.........................)))))	chr19:47223136-47223425(-)$1	1	138	173	41.0063
.(((..............................)	chr5:10353837-10354096(+)$1	1	88	123	42.9071
(((((.......................)))))))	chr19:39330799-39331130(-)$1	1	85	120	39.3231
.....((.....................)).....	chr5:61602140-61602389(+)$1	1	61	96	35.0076
.(((..........................)))..	chrX:122994062-122994376(+)$1	1	141	176	41.3623
.(((((....................))))).)))	chr11:73964633-73964877(+)$1	1	133	168	35.5913
(((((.....................))))))...	chr10:102123135-102123397(+)$1	1	209	244	33.7174
(((((............................))	chr12:6857147-6857419(-)$1	1	164	199	41.8076
((.((.......................)).))))	chr15:89442287-89442603(-)$1	1	93	128	38.6158
.((((..............................	chr3:47894298-47894593(-)$1	1	125	160	42.7766
(((((...........................)))	chr1:153923900-153924198(-)$1	1	52	87	41.1809
(((((..............................	chrX:153671363-153671625(+)$1	1	43	78	42.4419
.(((((............................)	chr16:3026860-3027143(-)$1	1	164	199	41.2080
..(((.....................))).)))))	chr10:102106984-102107227(+)$1	1	81	116	37.1575
(((((..............................	chr19:41812645-41812877(+)$1	1	80	115	42.2640
(((((...................))).))))).)	chr1:150601847-150602166(-)$1	1	224	259	33.9192
(((((((.....................)))))))	chr15:74923848-74924160(-)$1	1	258	293	37.3708
.(((.(.....................).))).))	chr19:54377719-54377980(+)$1	1	206	241	38.7235
((((........................))))(((	chr19:40487113-40487378(+)$1	1	94	129	39.4577
..(((.......................)))....	chr15:41571905-41572201(+)$1	1	169	204	35.2253
(((((......................)))))(((	chr4:77996894-77997127(-)$1	1	94	129	35.4162
((.((........................))...)	chr8:11695930-11696191(+)$1	1	72	107	39.9277
((((........................)))))..	chr12:50156585-50156856(+)$1	1	93	128	38.2686
(((((..............................	chr22:42301904-42302155(+)$1	1	182	217	41.8679
(((((..............................	chr15:72491361-72491657(-)$1	1	178	213	41.8679
((((.........................))))))	chr12:58141960-58142270(-)$1	1	97	132	40.2076
.((((............................))	chr1:155260168-155260470(-)$1	1	209	244	42.1443
.((((...........................)))	chr19:7989773-7990092(-)$1	1	122	157	40.8883
.(((........................))).)))	chr2:223436411-223436678(-)$1	1	119	154	40.3044
..((...........................))..	chr3:38495342-38495607(+)$1	1	78	113	40.8210
.(((((......................)))))..	chr5:172378279-172378532(+)$1	1	109	144	38.3225
.((((.........................)))).	chr17:29422021-29422292(+)$1	1	112	147	40.9315
..(((..................)))..)))))..	chr12:49332513-49332790(-)$1	1	242	277	31.5943
.((............................)).)	chr11:119205552-119205839(+)$1	1	110	145	40.3240
(((((.......................)))))))	chr1:227179496-227179801(-)$1	1	164	199	36.1033
.((((.............................)	chr19:47278131-47278434(-)$1	1	171	206	42.5374
..((........................))..)))	chr9:131909684-131909984(+)$1	1	132	167	39.2017
.((((.......................)))))))	chr7:143087827-143088100(+)$1	1	42	77	39.5311
((((((......................)))))))	chr22:21805139-21805386(+)$1	1	179	214	37.8850

#PSSM
[ : 0.22	e : 0.15	! : 0.13	g : 0.10	f : 0.08	= : 0.05	d : 0.05	c : 0.03	" : 0.03	i : 0.03	# : 0.01	& : 0.01	$ : 0.01	: : 0.01	' : 0.01	h : 0.01	
d : 0.23	e : 0.20	c : 0.15	g : 0.10	f : 0.08	! : 0.06	= : 0.05	i : 0.03	$ : 0.01	: : 0.01	b : 0.01	h : 0.01	
d : 0.23	c : 0.20	e : 0.15	g : 0.10	f : 0.08	= : 0.05	b : 0.05	i : 0.03	[ : 0.03	: : 0.01	$ : 0.01	h : 0.01	
d : 0.25	c : 0.18	e : 0.15	g : 0.10	b : 0.08	f : 0.06	= : 0.05	i : 0.03	: : 0.01	$ : 0.01	^ : 0.01	h : 0.01	
^ : 0.23	d : 0.23	c : 0.08	e : 0.08	f : 0.06	g : 0.06	b : 0.05	= : 0.05	[ : 0.03	i : 0.03	! : 0.01	$ : 0.01	h : 0.01	
^ : 0.76	e : 0.05	b : 0.03	d : 0.03	g : 0.03	! : 0.01	c : 0.01	= : 0.01	a : 0.01	i : 0.01	
^ : 0.89	b : 0.05	d : 0.01	c : 0.01	= : 0.01	
^ : 0.98	b : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.98	c : 0.01	
^ : 0.94	c : 0.03	g : 0.01	
^ : 0.94	c : 0.03	g : 0.01	
^ : 0.88	c : 0.03	b : 0.01	g : 0.01	e : 0.01	f : 0.01	2 : 0.01	
^ : 0.81	b : 0.03	g : 0.03	e : 0.03	f : 0.01	c : 0.01	] : 0.01	a : 0.01	2 : 0.01	
^ : 0.47	e : 0.10	d : 0.10	b : 0.08	c : 0.08	g : 0.05	] : 0.03	f : 0.01	= : 0.01	h : 0.01	i : 0.01	
^ : 0.42	d : 0.11	c : 0.10	e : 0.10	b : 0.08	g : 0.06	] : 0.03	f : 0.01	= : 0.01	h : 0.01	i : 0.01	
^ : 0.35	d : 0.15	c : 0.13	e : 0.11	g : 0.06	] : 0.03	= : 0.03	6 : 0.01	f : 0.01	b : 0.01	h : 0.01	2 : 0.01	i : 0.01	
^ : 0.32	d : 0.15	e : 0.11	g : 0.06	c : 0.06	b : 0.05	: : 0.03	= : 0.03	] : 0.03	0 : 0.01	6 : 0.01	f : 0.01	3 : 0.01	h : 0.01	2 : 0.01	i : 0.01	
^ : 0.28	e : 0.11	d : 0.10	g : 0.08	c : 0.08	] : 0.05	b : 0.05	= : 0.03	: : 0.03	2 : 0.01	0 : 0.01	4 : 0.01	H : 0.01	6 : 0.01	E : 0.01	3 : 0.01	h : 0.01	i : 0.01	
^ : 0.25	d : 0.11	g : 0.08	: : 0.08	e : 0.06	2 : 0.06	c : 0.06	3 : 0.03	= : 0.03	i : 0.03	] : 0.03	7 : 0.01	0 : 0.01	4 : 0.01	H : 0.01	6 : 0.01	E : 0.01	h : 0.01	
^ : 0.16	d : 0.13	e : 0.10	c : 0.10	: : 0.10	g : 0.06	2 : 0.05	f : 0.03	= : 0.03	i : 0.03	h : 0.03	3 : 0.01	7 : 0.01	0 : 0.01	4 : 0.01	H : 0.01	6 : 0.01	E : 0.01	] : 0.01	

#score	2307.518979915415
#seq	59
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_transcript_m1_run2.txt

#BEAR
dddeeeeewwwwwwwwwwwwwweeeee	chr5:174956156-174956473(+)$1	317	177	204	23.7256
=========uuuuuuuuuuuu======	chr17:7215435-7215692(+)$1	257	164	191	24.8256
[ffffffwwwwwwwwwwwwwwffffff	chr22:39127414-39127677(+)$1	263	18	45	23.0189
::ffffffvvvvvvvvvvvvvffffff	chr22:21305161-21305393(+)$1	232	83	110	22.9555
gggggg[bbuuuuuuuuuuuubb]ggg	chr19:7978966-7979267(+)$1	301	159	186	23.8767
""bb!!cccvvvvvvvvvvvvvccc22	chr17:1421505-1421860(-)$1	355	141	168	25.2861
!a[eeeeevvvvvvvvvvvvveeeee]	chr19:47778290-47778560(+)$1	270	155	182	25.9487
ee####cccuuuuuuuuuuuuccc333	chr11:769864-770147(-)$1	283	204	231	24.6885
"ffffff[auuuuuuuuuuuua]ffff	chr10:74035476-74035796(+)$1	320	215	242	24.3944
ccc[eeeeevvvvvvvvvvvvveeeee	chr1:156712953-156713239(-)$1	286	191	218	25.4289
!!ddddddddtttttttttttdddd22	chr19:18978658-18978930(+)$1	272	70	97	22.3637
:ffffffwwwwwwwwwwwwwwffffff	chr6:150046171-150046431(-)$1	260	111	138	22.0265
=====[cccuuuuuuuuuuuuccc]==	chr4:1718490-1718761(-)$1	271	121	148	25.0687
"""eeeeewwwwwwwwwwwwwweeeee	chr22:41754559-41754815(+)$1	256	70	97	24.4284
ddddeeeeeuuuuuuuuuuuueeeeeJ	chr12:56365856-56366179(+)$1	323	257	284	22.5460
gggeeeeewwwwwwwwwwwwwweeeee	chr22:43563725-43564089(-)$1	364	239	266	24.2913
gggggg[bbwwwwwwwwwwwwwwbb]g	chr9:136229256-136229541(-)$1	285	184	211	22.5107
!!ffffffvvvvvvvvvvvvvffffff	chr19:1980827-1981100(+)$1	273	191	218	25.0528
[gggggggvvvvvvvvvvvvvgggggg	chr4:165998514-165998792(-)$1	278	221	248	25.7723
ee[bb[cccuuuuuuuuuuuuccc333	chr19:6212218-6212516(-)$1	298	250	277	24.4678
hhhhhhhccctttttttttttccc22h	chr12:120898940-120899294(+)$1	354	298	325	21.6802
[a[a[ddddtttttttttttdddd]aa	chr16:1750684-1750978(+)$1	294	185	212	22.5306
cc:a!!cccvvvvvvvvvvvvvccc22	chr17:41167581-41167864(-)$1	283	100	127	24.4557
ee!!eeeeevvvvvvvvvvvvveeeee	chr22:22274254-22274545(-)$1	291	15	42	25.4830
ccc[eeeeeuuuuuuuuuuuueeeee]	chr1:19543816-19544073(-)$1	257	171	198	24.9567
gg[gggggggtttttttttttgggggg	chr10:75531617-75531947(+)$1	330	265	292	23.3275
eeeeeeeeevvvvvvvvvvvvveeeee	chr20:32233938-32234202(+)$1	264	226	253	25.0702
!!ffffffvvvvvvvvvvvvvffffff	chr1:9674372-9674628(+)$1	256	165	192	25.0528
eee!!a[bbvvvvvvvvvvvvvbba22	chr11:64620440-64620702(-)$1	262	46	73	24.0468
eeeee[cccvvvvvvvvvvvvvcccee	chr17:73314314-73314566(-)$1	252	162	189	25.0421
Dgggggggvvvvvvvvvvvvvgggggg	chr3:128214514-128214776(+)$1	262	71	98	24.6560
dddd[cccvvvvvvvvvvvvvccc]dd	chr1:228286210-228286518(+)$1	308	208	235	24.2983
"""fffffftttttttttttffffff3	chr17:46138106-46138353(+)$1	247	60	87	22.9071
[bb[ddddwwwwwwwwwwwwwwdddd]	chr1:228286505-228286787(+)$1	282	9	36	23.2692
eee!!dddduuuuuuuuuuuudddd]e	chr17:37075650-37075907(+)$1	257	21	48	23.9712
:ffffffwwwwwwwwwwwwwwffffff	chr16:2036324-2036567(+)$1	243	215	242	22.0265
::gggggggtttttttttttggggggg	chr12:133298905-133299244(+)$1	339	266	293	21.2721
[bb"""ddddtttttttttttdddd44	chr9:131910233-131910497(+)$1	264	58	85	22.2771
!!bb!!ddddtttttttttttdddd22	chr9:131152756-131153008(+)$1	252	34	61	22.8036
ggggg[cccwwwwwwwwwwwwwwccc2	chr17:40351479-40351709(-)$1	230	194	221	23.6718
###eeeeewwwwwwwwwwwwwweeeee	chr5:115166314-115166566(-)$1	252	175	202	24.3106
c[eeeee[bbtttttttttttbbeeee	chr9:132643492-132643771(+)$1	279	95	122	22.4307
cc"""ddddvvvvvvvvvvvvvdddd3	chr11:66392950-66393214(+)$1	264	127	154	24.8066
dd[fffffftttttttttttffffff]	chr19:39982424-39982753(+)$1	329	120	147	22.4817
bb!!ddddwwwwwwwwwwwwwwdddd2	chr16:2869483-2869754(+)$1	271	118	145	23.1446
!!bb!!ddddtttttttttttdddd22	chr17:40554741-40554956(-)$1	215	164	191	22.8036
FFgggggggtttttttttttggggggg	chr19:3543851-3544076(-)$1	225	28	55	22.2156
hhhhhhhhvvvvvvvvvvvvvhhhhhh	chr16:23476392-23476715(-)$1	323	176	203	22.5688
:gggggggwwwwwwwwwwwwwwggggg	chr11:64621105-64621385(-)$1	280	123	150	23.5642
ggggggggguuuuuuuuuuuugggggg	chr17:38247707-38247950(+)$1	243	86	113	24.8467
ffffeeeeeuuuuuuuuuuuueeeee:	chr2:32533311-32533574(+)$1	263	25	52	23.4313
[gggggggwwwwwwwwwwwwwwggggg	chr9:132642893-132643155(+)$1	262	7	34	24.5567
dd!!eeeeeuuuuuuuuuuuueeeeed	chr1:33789719-33790003(-)$1	284	19	46	24.5156
fff!!eeeeettttttttttteeeee2	chr9:130267688-130268009(-)$1	321	250	277	23.3157

#otherMatches

#Seq PSSM
uccaucucaaaaaaaaaaaaaaGAGAU	chr5:174956156-174956473(+)$1	317	177	204	23.7256
CUCUCCCCAAACCCCUUUAGAUgggga	chr17:7215435-7215692(+)$1	257	164	191	24.8256
CGAUGGGAUUAUAGGACUCUCCCCAUC	chr22:39127414-39127677(+)$1	263	18	45	23.0189
UUACUUUGUUUUAAAAAGCAUCAGAGU	chr22:21305161-21305393(+)$1	232	83	110	22.9555
GGGGAGUCUCUCCUGCCUCCCAGCCUC	chr19:7978966-7979267(+)$1	301	159	186	23.8767
UCCUCCUCACCCACCUCCAAACUGACU	chr17:1421505-1421860(-)$1	355	141	168	25.2861
UGCCUCCCUCUCCUGCCUCCUGGGAGU	chr19:47778290-47778560(+)$1	270	155	182	25.9487
CCCUUGUGAUUAUAAAACCGUUCAGUU	chr11:769864-770147(-)$1	283	204	231	24.6885
ACAUGAAGAUAAGAUACUCACUGUUCA	chr10:74035476-74035796(+)$1	320	215	242	24.3944
CUCUAGGUCCCCAUACUCCUAUGAUCU	chr1:156712953-156713239(-)$1	286	191	218	25.4289
CUGGCAGGGACUCUUAUUUAUUCCCAU	chr19:18978658-18978930(+)$1	272	70	97	22.3637
AGUAUUUGUAACCAUAAGAGAAAGUAU	chr6:150046171-150046431(-)$1	260	111	138	22.0265
CAGAUCCUGCACACACAGACACAGCGU	chr4:1718490-1718761(-)$1	271	121	148	25.0687
ACCCAGACAUACAGUUAUAACCGUCUG	chr22:41754559-41754815(+)$1	256	70	97	24.4284
GGUGAGAGAUGUUUGAAUUUUUCUCUU	chr12:56365856-56366179(+)$1	323	257	284	22.5460
GAGCACAGCAUCCUCCUCUCACCUGUG	chr22:43563725-43564089(-)$1	364	239	266	24.2913
ACAGCCCCGACACACCACUUUCCUGAG	chr9:136229256-136229541(-)$1	285	184	211	22.5107
CACGGAGCUUCCUGCCUCUCUGCUCCG	chr19:1980827-1981100(+)$1	273	191	218	25.0528
CUCUAGAAAUCUGUUUCUCUGUUCUGG	chr4:165998514-165998792(-)$1	278	221	248	25.7723
GGGUCAGCCAACACUACAAAGGGCAGC	chr19:6212218-6212516(-)$1	298	250	277	24.4678
UUAAGGCAGCCUAAUUUACAAGCUUGG	chr12:120898940-120899294(+)$1	354	298	325	21.6802
UGAGAGGAAAAGCUCUUUACUUCCGCC	chr16:1750684-1750978(+)$1	294	185	212	22.5306
CCUGUUGUGUUCCAUGUGCUUUCACCU	chr17:41167581-41167864(-)$1	283	100	127	24.4557
CUUAUUAGUGUCUAUUCUUAAAAUUAA	chr22:22274254-22274545(-)$1	291	15	42	25.4830
cucagcuaauuuuuuguauuuuuagua	chr1:19543816-19544073(-)$1	257	171	198	24.9567
UUUAAUUUGUAAAGAAAUAAAAUAAAU	chr10:75531617-75531947(+)$1	330	265	292	23.3275
AGCCUCUGGCAUCCUCUCACACCCAGA	chr20:32233938-32234202(+)$1	264	226	253	25.0702
UGCCCUGCCUACCCCUGAAACGUGGGG	chr1:9674372-9674628(+)$1	256	165	192	25.0528
UGGAUGUCCUUACAACGCCCCUGGCCC	chr11:64620440-64620702(-)$1	262	46	73	24.0468
UCAUCCUGCUUCUCUUUUCCUCGCAGA	chr17:73314314-73314566(-)$1	252	162	189	25.0421
UACAGGGCCUUUUCUACUUCUGUCUUG	chr3:128214514-128214776(+)$1	262	71	98	24.6560
AGGCCGCCCUACCCACCUUCAGGCAGC	chr1:228286210-228286518(+)$1	308	208	235	24.2983
CUUAGAAUUUCUUGCGCUUUGAUUUUU	chr17:46138106-46138353(+)$1	247	60	87	22.9071
CUCGUGCUCGCUCAGACACUUUGGCAG	chr1:228286505-228286787(+)$1	282	9	36	23.2692
CCCUCCUGCCCACGCAGACCUGCAGCG	chr17:37075650-37075907(+)$1	257	21	48	23.9712
UGAGGGUCCACCAGCCAUCCUACCCUC	chr16:2036324-2036567(+)$1	243	215	242	22.0265
UAUGCUGUUAAUUUAGGAAAAACAGUA	chr12:133298905-133299244(+)$1	339	266	293	21.2721
UGGAGAGGCCUUAGCUGUCCUGGCUGG	chr9:131910233-131910497(+)$1	264	58	85	22.2771
CCUCCUCCACAACUGAAUAUAGUGGCU	chr9:131152756-131153008(+)$1	252	34	61	22.8036
CACACAAGUCCUCAAAAGUUUCAGCUC	chr17:40351479-40351709(-)$1	230	194	221	23.6718
aaaaauaaaaauuaaaaaaaaauuauu	chr5:115166314-115166566(-)$1	252	175	202	24.3106
AGAGCCCACCUGGAGGGAUGUGGGGGC	chr9:132643492-132643771(+)$1	279	95	122	22.4307
GCGUACCCGCCUCUCCCCACCCCGGGC	chr11:66392950-66393214(+)$1	264	127	154	24.8066
acagugguguaacuauagcucacugca	chr19:39982424-39982753(+)$1	329	120	147	22.4817
GUCCCUGCAUCAUCCCACAACAGUAGU	chr16:2869483-2869754(+)$1	271	118	145	23.1446
UCUGCCCUGCUUUUUAGAACUGCAGUU	chr17:40554741-40554956(-)$1	215	164	191	22.8036
CUGGGUGCAGAGACAGUGGGUGCAUCC	chr19:3543851-3544076(-)$1	225	28	55	22.2156
agcccaggauuucaaguccagccuggg	chr16:23476392-23476715(-)$1	323	176	203	22.5688
UGCGCGGGCCCUGCCCUUUCCUCCCGC	chr11:64621105-64621385(-)$1	280	123	150	23.5642
CCCAGUGGAAUUCCUGACCUGUCUGCU	chr17:38247707-38247950(+)$1	243	86	113	24.8467
ccuggcuaauuuuuuguauuuuuagua	chr2:32533311-32533574(+)$1	263	25	52	23.4313
CAAGACUCUGUGACGUUAAUUUGGGUC	chr9:132642893-132643155(+)$1	262	7	34	24.5567
AGCCAGGGUUCUCCCCCCUACACCCUC	chr1:33789719-33790003(-)$1	284	19	46	24.5156
GCAUCUCUUCCCUCUUGUCCCGAAGAU	chr9:130267688-130268009(-)$1	321	250	277	23.3157

#DB
)))(((((..............)))))	chr5:174956156-174956473(+)$1	1	177	204	23.7256
(((((((((............))))))	chr17:7215435-7215692(+)$1	1	164	191	24.8256
.((((((..............))))))	chr22:39127414-39127677(+)$1	1	18	45	23.0189
..((((((.............))))))	chr22:21305161-21305393(+)$1	1	83	110	22.9555
((((((.((............)).)))	chr19:7978966-7979267(+)$1	1	159	186	23.8767
..((..(((.............)))..	chr17:1421505-1421860(-)$1	1	141	168	25.2861
.(.(((((.............))))).	chr19:47778290-47778560(+)$1	1	155	182	25.9487
((....(((............)))...	chr11:769864-770147(-)$1	1	204	231	24.6885
.((((((.(............).))))	chr10:74035476-74035796(+)$1	1	215	242	24.3944
(((.(((((.............)))))	chr1:156712953-156713239(-)$1	1	191	218	25.4289
..((((((((...........))))..	chr19:18978658-18978930(+)$1	1	70	97	22.3637
.((((((..............))))))	chr6:150046171-150046431(-)$1	1	111	138	22.0265
(((((.(((............))).))	chr4:1718490-1718761(-)$1	1	121	148	25.0687
...(((((..............)))))	chr22:41754559-41754815(+)$1	1	70	97	24.4284
))))(((((............))))))	chr12:56365856-56366179(+)$1	1	257	284	22.5460
)))(((((..............)))))	chr22:43563725-43564089(-)$1	1	239	266	24.2913
((((((.((..............)).)	chr9:136229256-136229541(-)$1	1	184	211	22.5107
..((((((.............))))))	chr19:1980827-1981100(+)$1	1	191	218	25.0528
.(((((((.............))))))	chr4:165998514-165998792(-)$1	1	221	248	25.7723
((.((.(((............)))...	chr19:6212218-6212516(-)$1	1	250	277	24.4678
((((((((((...........)))..)	chr12:120898940-120899294(+)$1	1	298	325	21.6802
.(.(.((((...........)))).))	chr16:1750684-1750978(+)$1	1	185	212	22.5306
)).(..(((.............)))..	chr17:41167581-41167864(-)$1	1	100	127	24.4557
((..(((((.............)))))	chr22:22274254-22274545(-)$1	1	15	42	25.4830
(((.(((((............))))).	chr1:19543816-19544073(-)$1	1	171	198	24.9567
((.(((((((...........))))))	chr10:75531617-75531947(+)$1	1	265	292	23.3275
))))(((((.............)))))	chr20:32233938-32234202(+)$1	1	226	253	25.0702
..((((((.............))))))	chr1:9674372-9674628(+)$1	1	165	192	25.0528
(((..(.((.............)))..	chr11:64620440-64620702(-)$1	1	46	73	24.0468
(((((.(((.............)))))	chr17:73314314-73314566(-)$1	1	162	189	25.0421
((((((((.............))))))	chr3:128214514-128214776(+)$1	1	71	98	24.6560
((((.(((.............))).))	chr1:228286210-228286518(+)$1	1	208	235	24.2983
...((((((...........)))))).	chr17:46138106-46138353(+)$1	1	60	87	22.9071
.((.((((..............)))).	chr1:228286505-228286787(+)$1	1	9	36	23.2692
(((..((((............)))).)	chr17:37075650-37075907(+)$1	1	21	48	23.9712
.((((((..............))))))	chr16:2036324-2036567(+)$1	1	215	242	22.0265
..(((((((...........)))))))	chr12:133298905-133299244(+)$1	1	266	293	21.2721
.((...((((...........))))..	chr9:131910233-131910497(+)$1	1	58	85	22.2771
..((..((((...........))))..	chr9:131152756-131153008(+)$1	1	34	61	22.8036
(((((.(((..............))).	chr17:40351479-40351709(-)$1	1	194	221	23.6718
...(((((..............)))))	chr5:115166314-115166566(-)$1	1	175	202	24.3106
(.(((((.((...........))))))	chr9:132643492-132643771(+)$1	1	95	122	22.4307
((...((((.............)))).	chr11:66392950-66393214(+)$1	1	127	154	24.8066
((.((((((...........)))))).	chr19:39982424-39982753(+)$1	1	120	147	22.4817
((..((((..............)))).	chr16:2869483-2869754(+)$1	1	118	145	23.1446
..((..((((...........))))..	chr17:40554741-40554956(-)$1	1	164	191	22.8036
(((((((((...........)))))))	chr19:3543851-3544076(-)$1	1	28	55	22.2156
((((((((.............))))))	chr16:23476392-23476715(-)$1	1	176	203	22.5688
.(((((((..............)))))	chr11:64621105-64621385(-)$1	1	123	150	23.5642
))(((((((............))))))	chr17:38247707-38247950(+)$1	1	86	113	24.8467
))))(((((............))))).	chr2:32533311-32533574(+)$1	1	25	52	23.4313
.(((((((..............)))))	chr9:132642893-132643155(+)$1	1	7	34	24.5567
((..(((((............))))))	chr1:33789719-33790003(-)$1	1	19	46	24.5156
(((..(((((...........))))).	chr9:130267688-130268009(-)$1	1	250	277	23.3157

#PSSM
e : 0.12	[ : 0.11	g : 0.11	! : 0.11	d : 0.09	: : 0.09	c : 0.09	" : 0.07	= : 0.03	h : 0.03	f : 0.03	D : 0.01	# : 0.01	b : 0.01	F : 0.01	
g : 0.18	e : 0.12	f : 0.11	d : 0.09	! : 0.09	c : 0.07	" : 0.05	b : 0.05	= : 0.03	: : 0.03	a : 0.03	h : 0.03	# : 0.01	[ : 0.01	F : 0.01	
g : 0.20	f : 0.16	b : 0.09	[ : 0.09	e : 0.09	d : 0.07	" : 0.05	! : 0.05	= : 0.03	# : 0.03	c : 0.03	h : 0.03	: : 0.01	
g : 0.20	f : 0.18	e : 0.14	! : 0.11	b : 0.07	[ : 0.05	d : 0.05	= : 0.03	h : 0.03	a : 0.03	" : 0.03	# : 0.01	
e : 0.25	g : 0.20	f : 0.16	! : 0.12	d : 0.05	= : 0.03	h : 0.03	[ : 0.03	" : 0.03	# : 0.01	b : 0.01	
e : 0.25	g : 0.18	f : 0.16	d : 0.11	! : 0.07	[ : 0.07	h : 0.03	= : 0.01	# : 0.01	a : 0.01	c : 0.01	" : 0.01	
e : 0.25	f : 0.16	d : 0.16	c : 0.14	g : 0.14	[ : 0.05	h : 0.03	= : 0.01	
e : 0.24	c : 0.16	d : 0.16	g : 0.14	f : 0.09	w : 0.05	b : 0.05	[ : 0.03	= : 0.01	h : 0.01	
w : 0.20	v : 0.14	c : 0.14	e : 0.14	d : 0.12	b : 0.07	g : 0.07	f : 0.03	= : 0.01	a : 0.01	
v : 0.29	w : 0.24	u : 0.22	t : 0.09	d : 0.07	c : 0.01	g : 0.01	b : 0.01	e : 0.01	
v : 0.29	w : 0.24	t : 0.24	u : 0.22	
v : 0.29	w : 0.24	t : 0.24	u : 0.22	
v : 0.29	w : 0.24	t : 0.24	u : 0.22	
v : 0.29	w : 0.24	t : 0.24	u : 0.22	
v : 0.29	w : 0.24	t : 0.24	u : 0.22	
v : 0.29	w : 0.24	t : 0.24	u : 0.22	
v : 0.29	w : 0.24	t : 0.24	u : 0.22	
v : 0.29	w : 0.24	t : 0.24	u : 0.22	
v : 0.29	w : 0.24	t : 0.24	u : 0.22	
v : 0.29	w : 0.24	t : 0.24	u : 0.22	
v : 0.29	w : 0.24	u : 0.22	t : 0.14	f : 0.03	g : 0.03	d : 0.01	
w : 0.18	f : 0.14	v : 0.14	e : 0.11	d : 0.11	g : 0.11	c : 0.09	b : 0.03	= : 0.01	a : 0.01	h : 0.01	
e : 0.24	d : 0.16	f : 0.14	c : 0.14	g : 0.14	b : 0.05	w : 0.03	= : 0.01	] : 0.01	h : 0.01	
e : 0.25	f : 0.16	c : 0.16	d : 0.16	g : 0.14	b : 0.03	= : 0.01	] : 0.01	h : 0.01	
e : 0.25	f : 0.16	g : 0.16	d : 0.14	c : 0.07	] : 0.05	3 : 0.03	= : 0.01	b : 0.01	2 : 0.01	a : 0.01	h : 0.01	
e : 0.27	f : 0.16	g : 0.16	2 : 0.12	d : 0.07	= : 0.03	3 : 0.03	] : 0.03	a : 0.01	4 : 0.01	c : 0.01	h : 0.01	
e : 0.18	g : 0.18	2 : 0.16	f : 0.12	] : 0.07	3 : 0.07	= : 0.03	h : 0.03	d : 0.03	J : 0.01	a : 0.01	4 : 0.01	: : 0.01	

#score	1284.4709173949868
#seq	54
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF756RYJ_AARS_transcript_m3_run2.txt

#BEAR
[ffffff####eeeeen	chr1:173835915-173836169(-)$1	254	109	126	7.8794
:ffffffmmmmffffff	chr19:45981777-45982012(-)$1	235	77	94	6.5103
ggggggg"""bb!!ccc	chr19:893460-893689(+)$1	229	54	71	5.1722
:ffffffmmmmffffff	chr19:45981755-45981977(-)$1	222	42	59	6.5103
!ffffffmmmmffffff	chr13:92000500-92000833(+)$1	333	278	295	7.3056
iiiiiii####gggggg	chrM:14366-14602(-)$1	236	165	182	5.9592
[ffffffnnnnnfffff	chr11:65194722-65194966(+)$1	244	57	74	7.1476
:ffffffmmmmffffff	chr8:9628391-9628655(+)$1	264	210	227	6.5103
""eeeee####ffffff	chr19:34882055-34882329(+)$1	274	221	238	7.7221
ffffffnnnnnffffff	chrM:4327-4548(+)$1	221	31	48	7.1553
=======####gggggg	chr19:34883331-34883588(+)$1	257	143	160	6.2045
ggfffffflllffffff	chr11:65192485-65192764(+)$1	279	196	213	7.2159
#ffffff"""eeeeeyy	chr7:98479393-98479606(+)$1	213	142	159	6.7301
fffffooooooffffff	chr8:9629524-9629794(+)$1	270	115	132	6.8974
a[eeeee####eeeeem	chrM:14174-14397(-)$1	223	113	130	6.0465
cccffffff!!ffffff	chrM:14252-14476(-)$1	224	159	176	6.5484
!ffffff####a!!bb#	chrM:14222-14452(-)$1	230	52	69	7.3851
ffffffnnnnnffffff	chrM:4319-4527(+)$1	208	39	56	7.1553
a[eeeee####eeeeem	chrM:14164-14374(-)$1	210	90	107	6.0465
ffffffnnnnnffffff	chrM:4348-4557(+)$1	209	10	27	7.1553
[ffffff$$$$$ccc[b	chr11:65192395-65192685(+)$1	290	33	50	6.6971
:ffffff"""cccrrrr	chrM:516-725(+)$1	209	100	117	6.4409
b[ffffff"""ffffff	chr3:160232598-160232823(-)$1	225	125	142	8.7077
a[eeeee####eeeeem	chrM:14157-14364(-)$1	207	80	97	6.0465
:ffffff"""cccrrrr	chrM:488-714(+)$1	226	128	145	6.4409
ffffffnnnnnffffff	chrM:4192-4429(+)$1	237	166	183	7.1553
affffff####ffffff	chr11:62622020-62622237(-)$1	217	42	59	9.8416

#otherMatches

#Seq PSSM
AGAGUAGUGGACAGAAG	chr1:173835915-173836169(-)$1	254	109	126	7.8794
uccucaguggucugggg	chr19:45981777-45982012(-)$1	235	77	94	6.5103
uggaacgauacagagaa	chr19:893460-893689(+)$1	229	54	71	5.1722
uccucaguggucugggg	chr19:45981755-45981977(-)$1	222	42	59	6.5103
ACUUUGUACGCGCGAGG	chr13:92000500-92000833(+)$1	333	278	295	7.3056
GAGGCAUGGGGGUCAGG	chrM:14366-14602(-)$1	236	165	182	5.9592
CAGCAAGGGAGGCUUGU	chr11:65194722-65194966(+)$1	244	57	74	7.1476
gcauguguguguauAUG	chr8:9628391-9628655(+)$1	264	210	227	6.5103
GGUCUGUCAAUAUCAGA	chr19:34882055-34882329(+)$1	274	221	238	7.7221
gagaauccaaaauucuc	chrM:4327-4548(+)$1	221	31	48	7.1553
UGGGUCUGUCAGUAUCU	chr19:34883331-34883588(+)$1	257	143	160	6.2045
ACAAACAAAAAUUGUUU	chr11:65192485-65192764(+)$1	279	196	213	7.2159
UGCAUUAACAUAAUUUC	chr7:98479393-98479606(+)$1	213	142	159	6.7301
CAugggacucaucaugu	chr8:9629524-9629794(+)$1	270	115	132	6.8974
GGGUCAGGGUUGAUUCG	chrM:14174-14397(-)$1	223	113	130	6.0465
AGUGUAGGAAGCUGAAU	chrM:14252-14476(-)$1	224	159	176	6.5484
UUUUAGUGGGGUUAGCG	chrM:14222-14452(-)$1	230	52	69	7.3851
gagaauccaaaauucuc	chrM:4319-4527(+)$1	208	39	56	7.1553
GGGUCAGGGUUGAUUCG	chrM:14164-14374(-)$1	210	90	107	6.0465
gagaauccaaaauucuc	chrM:4348-4557(+)$1	209	10	27	7.1553
GGUACUGGGAGGGAUGA	chr11:65192395-65192685(+)$1	290	33	50	6.6971
AUGUUUAGACGGGCUCA	chrM:516-725(+)$1	209	100	117	6.4409
CCAAAAGAGCCUAGUAU	chr3:160232598-160232823(-)$1	225	125	142	8.7077
GGGUCAGGGUUGAUUCG	chrM:14157-14364(-)$1	207	80	97	6.0465
AUGUUUAGACGGGCUCA	chrM:488-714(+)$1	226	128	145	6.4409
gagaauccaaaauucuc	chrM:4192-4429(+)$1	237	166	183	7.1553
CCCUCAUCCAUAUAUCG	chr11:62622020-62622237(-)$1	217	42	59	9.8416

#DB
.((((((....(((((.	chr1:173835915-173836169(-)$1	1	109	126	7.8794
.((((((....))))))	chr19:45981777-45982012(-)$1	1	77	94	6.5103
(((((((...((..(((	chr19:893460-893689(+)$1	1	54	71	5.1722
.((((((....))))))	chr19:45981755-45981977(-)$1	1	42	59	6.5103
.((((((....))))))	chr13:92000500-92000833(+)$1	1	278	295	7.3056
(((((((....((((((	chrM:14366-14602(-)$1	1	165	182	5.9592
.((((((.....)))))	chr11:65194722-65194966(+)$1	1	57	74	7.1476
.((((((....))))))	chr8:9628391-9628655(+)$1	1	210	227	6.5103
..(((((....((((((	chr19:34882055-34882329(+)$1	1	221	238	7.7221
((((((.....))))))	chrM:4327-4548(+)$1	1	31	48	7.1553
(((((((....((((((	chr19:34883331-34883588(+)$1	1	143	160	6.2045
))((((((...))))))	chr11:65192485-65192764(+)$1	1	196	213	7.2159
.((((((...(((((..	chr7:98479393-98479606(+)$1	1	142	159	6.7301
(((((......))))))	chr8:9629524-9629794(+)$1	1	115	132	6.8974
(.(((((....(((((.	chrM:14174-14397(-)$1	1	113	130	6.0465
)))((((((..((((((	chrM:14252-14476(-)$1	1	159	176	6.5484
.((((((....(..((.	chrM:14222-14452(-)$1	1	52	69	7.3851
((((((.....))))))	chrM:4319-4527(+)$1	1	39	56	7.1553
(.(((((....(((((.	chrM:14164-14374(-)$1	1	90	107	6.0465
((((((.....))))))	chrM:4348-4557(+)$1	1	10	27	7.1553
.((((((.....(((.(	chr11:65192395-65192685(+)$1	1	33	50	6.6971
.((((((...(((....	chrM:516-725(+)$1	1	100	117	6.4409
(.((((((...((((((	chr3:160232598-160232823(-)$1	1	125	142	8.7077
(.(((((....(((((.	chrM:14157-14364(-)$1	1	80	97	6.0465
.((((((...(((....	chrM:488-714(+)$1	1	128	145	6.4409
((((((.....))))))	chrM:4192-4429(+)$1	1	166	183	7.1553
(((((((....((((((	chr11:62622020-62622237(-)$1	1	42	59	9.8416

#PSSM
: : 0.18	f : 0.18	a : 0.14	[ : 0.11	g : 0.07	! : 0.07	i : 0.03	" : 0.03	= : 0.03	# : 0.03	c : 0.03	b : 0.03	
f : 0.62	[ : 0.14	g : 0.07	i : 0.03	" : 0.03	= : 0.03	c : 0.03	
f : 0.70	e : 0.14	g : 0.03	i : 0.03	= : 0.03	c : 0.03	
f : 0.74	e : 0.14	g : 0.03	i : 0.03	= : 0.03	
f : 0.74	e : 0.14	g : 0.03	i : 0.03	= : 0.03	
f : 0.70	e : 0.14	g : 0.03	i : 0.03	= : 0.03	o : 0.03	
f : 0.55	e : 0.14	n : 0.14	g : 0.03	i : 0.03	= : 0.03	o : 0.03	
# : 0.33	n : 0.18	m : 0.14	" : 0.14	f : 0.11	o : 0.03	$ : 0.03	
# : 0.33	" : 0.18	n : 0.18	m : 0.14	l : 0.03	o : 0.03	f : 0.03	$ : 0.03	
# : 0.33	" : 0.18	n : 0.18	m : 0.14	l : 0.03	o : 0.03	! : 0.03	$ : 0.03	
# : 0.33	n : 0.18	m : 0.14	c : 0.07	b : 0.03	l : 0.03	e : 0.03	o : 0.03	! : 0.03	$ : 0.03	" : 0.03	
f : 0.51	e : 0.18	g : 0.07	c : 0.07	b : 0.03	n : 0.03	a : 0.03	$ : 0.03	
f : 0.55	e : 0.18	c : 0.11	! : 0.07	g : 0.07	
f : 0.55	e : 0.18	! : 0.07	g : 0.07	r : 0.07	c : 0.03	
f : 0.55	e : 0.18	c : 0.07	g : 0.07	r : 0.07	b : 0.03	
f : 0.55	e : 0.14	g : 0.07	r : 0.07	c : 0.03	y : 0.03	b : 0.03	[ : 0.03	
f : 0.55	m : 0.11	g : 0.07	r : 0.07	n : 0.03	c : 0.03	y : 0.03	# : 0.03	b : 0.03	

#score	186.5883108159222
#seq	27
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF871BYW_KHSRP_transcript_m2_run2.txt

#BEAR
ddccc"""bboooooobb22ccc]ddd	chr6:132027686-132027963(+)$1	277	52	79	11.0682
ccc!!eeeeeooooooeeeee]ccc33	chr7:156979284-156979604(+)$1	320	155	182	11.8657
!===========mmmm===========	chr12:105510782-105511040(+)$1	258	134	161	14.9174
!!==========lll==========33	chr12:102556794-102557102(+)$1	308	34	61	15.2463
==========rrrrrrrrr========	chr17:21541451-21541719(+)$1	268	169	196	14.1339
==========oooooo===========	chr1:167944196-167944462(+)$1	266	115	142	17.9776
============mmmm===========	chr13:76250077-76250417(+)$1	340	247	274	15.0297
==========oooooo===========	chr15:58992244-58992483(-)$1	239	210	237	17.9776
==========mmmm==========:ee	chr10:121340856-121341088(-)$1	232	29	56	12.4663
f"""gggggggnnnnnggggggg4444	chr7:156484442-156484734(-)$1	292	52	79	10.9675
bb[a"""cccooooooccc4444a]bb	chr7:104961736-104962001(-)$1	265	19	46	12.8172
gg[dddd[bboooooobb]ddddgggg	chr2:178252360-178252631(-)$1	271	154	181	11.1532
=========[ammmma22=========	chr5:139818169-139818473(+)$1	304	38	65	13.8568
bb[==========lll==========]	chr21:34958408-34958670(-)$1	262	114	141	14.3871
gg!!dddd[aooooooa]dddd22ggg	chr3:130452161-130452440(-)$1	279	116	143	11.4717
[===========mmmm===========	chr6:111121174-111121435(-)$1	261	195	222	14.9711
ff[gggggggooooooggggggg]fff	chr4:129964268-129964591(-)$1	323	176	203	13.1021
[eeeeeacccooooooccc]a]eeeee	chr5:167925318-167925586(+)$1	268	140	167	11.7773
===="""cccooooooccc22======	chr10:94745691-94745953(+)$1	262	67	94	15.9201
iiiiii[cccooooooccc]iiiiiii	chr12:69643406-69643652(+)$1	246	85	112	15.6164
ffff"""cccooooooccc]ffffff:	chr4:71842039-71842272(+)$1	233	136	163	11.1356
===========mmmm===========:	chr4:151417838-151418119(-)$1	281	0	27	13.8079
gggggeeeeeooooooeeeeeeeeee[	chr17:30697379-30697626(+)$1	247	156	183	11.0510
gggggg!!bboooooobbggggggg]f	chr7:26239051-26239269(-)$1	218	20	47	13.3003
c[ccc[ddddoooooodddd]ccc]cc	chr11:107288011-107288334(-)$1	323	18	45	11.2512
============mmmm===========	chr11:120208510-120208809(+)$1	299	63	90	15.0297
ggggggg[cccnnnnnccc22gggggg	chr4:123992567-123992881(+)$1	314	5	32	10.9512
==========rrrrrrrrr========	chr7:152112453-152112757(-)$1	304	223	250	14.1339
==========oooooo==========3	chr2:172584915-172585172(+)$1	257	207	234	17.9216
e####eeeeeooooooeeeee333eee	chr11:34118197-34118482(+)$1	285	60	87	11.7608
===========nnnnn===========	chr2:32704209-32704461(+)$1	252	24	51	15.5496
"""==========lll==========4	chr1:235306964-235307267(-)$1	303	212	239	15.0188
===!!a[cccooooooccc]a22====	chr1:109299547-109299823(+)$1	276	229	256	14.9297
[==========mmmm==========]b	chr1:207862431-207862694(+)$1	263	159	186	14.4181
iiiiii[cccnnnnnccc22iiiiiii	chr2:231936076-231936402(+)$1	326	243	270	12.1219
iiiiiiiiibbmmmmbb]iiiiiiiii	chr5:132091616-132091888(-)$1	272	0	27	11.7133
eeee####bboooooobb4444eeeee	chr2:120624320-120624639(+)$1	319	202	229	11.5723
[ccc!!ddddoooooodddd22ccc]b	chr7:17937807-17938059(-)$1	252	13	40	11.2168
dd$$$$$cccooooooccc333dddd2	chr9:96941540-96941849(+)$1	309	198	225	11.4182
gggg[eeeeeooooooeeeee333ggg	chr8:100733642-100733959(+)$1	317	162	189	12.5938
ddiiiiiiiiinnnnniiiiiiiii22	chr11:47827982-47828290(-)$1	308	93	120	12.4364
===========nnnnn===========	chr6:69455371-69455643(+)$1	272	149	176	15.5496
fffff"""bboooooobb333ffffff	chr6:82949505-82949776(-)$1	271	60	87	11.4810
a!!a[ccc[aooooooaccc]a22a22	chr7:32628127-32628417(+)$1	290	234	261	12.4102
==========oooooo===========	chr2:158630321-158630631(-)$1	310	77	104	17.9776
###gggggggooooooggggggg333e	chr7:23469184-23469497(-)$1	313	67	94	13.8053
==========rrrrrrrrr========	chr15:62323778-62324079(-)$1	301	21	48	14.1339
==========ppppppp==========	chr3:160129826-160130049(+)$1	223	128	155	12.2956
iiiiiiiiirrrrrrrrriiiiiiiii	chr8:130533960-130534183(-)$1	223	113	140	12.6845

#otherMatches

#Seq PSSM
guggaugaaguuuccucuauuccugcu	chr6:132027686-132027963(+)$1	277	52	79	11.0682
GAAAAAUGUGAUUUCGUAUAUGUUUGU	chr7:156979284-156979604(+)$1	320	155	182	11.8657
uuAUGUGUAUAUGAUUAUGUAUAUGUA	chr12:105510782-105511040(+)$1	258	134	161	14.9174
aaguucauguguuuugcauauggauga	chr12:102556794-102557102(+)$1	308	34	61	15.2463
GCAAAUGGUUUCCCUAUUUAAUCAUUU	chr17:21541451-21541719(+)$1	268	169	196	14.1339
acauacauguguagaugcaugugugua	chr1:167944196-167944462(+)$1	266	115	142	17.9776
UCUUUUUCCACUUGCCAGUGGAAAAAG	chr13:76250077-76250417(+)$1	340	247	274	15.0297
uaguugggugcauauauauuuagcuac	chr15:58992244-58992483(-)$1	239	210	237	17.9776
UGUAAGAGUUCAAUAACUUUUAUAGGA	chr10:121340856-121341088(-)$1	232	29	56	12.4663
AAACAAUUGGCAAUGAGCCAAUUUAAA	chr7:156484442-156484734(-)$1	292	52	79	10.9675
ugucuuuucauuuuccugauaauguca	chr7:104961736-104962001(-)$1	265	19	46	12.8172
aauagaagauuaugauauguucuuuug	chr2:178252360-178252631(-)$1	271	154	181	11.1532
UGUUUAAUGACUUUUGGAUAUUAGACA	chr5:139818169-139818473(+)$1	304	38	65	13.8568
GAUAAAAUCUUUAGGUUGAAGGUUUUU	chr21:34958408-34958670(-)$1	262	114	141	14.3871
GUUUUUCUGAUUUGUUUGAGAAUUGCA	chr3:130452161-130452440(-)$1	279	116	143	11.4717
AAUUUAUUUACUGCUGAGUAGAUGAAU	chr6:111121174-111121435(-)$1	261	195	222	14.9711
UAAAUGUGUGUGAAUGUAUAUAUGUGC	chr4:129964268-129964591(-)$1	323	176	203	13.1021
CUUAAUCUGUAUAUCAACAUGuauuaa	chr5:167925318-167925586(+)$1	268	140	167	11.7773
UUGGUUUUUCUUACUUGAAUGuuaauu	chr10:94745691-94745953(+)$1	262	67	94	15.9201
UUUAAUGGUUAUCAAAGGCAAUUAAAU	chr12:69643406-69643652(+)$1	246	85	112	15.6164
GUGACUUUGCUUUUUUGUAUUUACUUU	chr4:71842039-71842272(+)$1	233	136	163	11.1356
UUAUGUUCCAUUAAAAUGGGAUAUAGU	chr4:151417838-151418119(-)$1	281	0	27	13.8079
AAUUUGCAUAGAGUUGUAUGUUAAUGU	chr17:30697379-30697626(+)$1	247	156	183	11.0510
AGGGAUAUUCGCGUCAGAAUCCUUUAC	chr7:26239051-26239269(-)$1	218	20	47	13.3003
GGAGAUAAAGAUGUCACUUUUUCUACC	chr11:107288011-107288334(-)$1	323	18	45	11.2512
UGAGGGUAAAUCAUGGGGUUUGCUUUU	chr11:120208510-120208809(+)$1	299	63	90	15.0297
ugcgaugagccgagauggcgccauugc	chr4:123992567-123992881(+)$1	314	5	32	10.9512
AUUGUAUAGGUAAUUAUCUUUUGUGUA	chr7:152112453-152112757(-)$1	304	223	250	14.1339
UGUAAAUAAUAAAAGAAUUGUUUACAA	chr2:172584915-172585172(+)$1	257	207	234	17.9216
CUAGUUCAAAUUAUUUUUUGAUUUGUA	chr11:34118197-34118482(+)$1	285	60	87	11.7608
aggauaaucuuuguauaagguuguuuu	chr2:32704209-32704461(+)$1	252	24	51	15.5496
auugugauggagucuugcucugucgcu	chr1:235306964-235307267(-)$1	303	212	239	15.0188
uaugaagauggguauauauguguguau	chr1:109299547-109299823(+)$1	276	229	256	14.9297
uguuaauguaauauauuacauugauug	chr1:207862431-207862694(+)$1	263	159	186	14.4181
CUUUGAUUAAUGUGUUUAUUUUGAAGU	chr2:231936076-231936402(+)$1	326	243	270	12.1219
GUGGGCUCCCUGUUAAGUGGGGCUCAU	chr5:132091616-132091888(-)$1	272	0	27	11.7133
CUCGUUUAACUCUGUUGUAUUUUGAGA	chr2:120624320-120624639(+)$1	319	202	229	11.5723
UAAUCCACAGCACUUACUGUCUGUUCU	chr7:17937807-17938059(-)$1	252	13	40	11.2168
UGGAAGGUCAAUAAAAUGAAAGUGGUU	chr9:96941540-96941849(+)$1	309	198	225	11.4182
UAUAAAUGUCAUUGUGGAUAUCACUAU	chr8:100733642-100733959(+)$1	317	162	189	12.5938
UAUUUUGUAUUGUUCUGGUAUAAAAGU	chr11:47827982-47828290(-)$1	308	93	120	12.4364
AUuauauauauaugucauauauguaau	chr6:69455371-69455643(+)$1	272	149	176	15.5496
UUUACUUAACUUUUUUGUGAUGUAAAA	chr6:82949505-82949776(-)$1	271	60	87	11.4810
GUUGUCCAUGUGGUUUCUGGCCUCCUU	chr7:32628127-32628417(+)$1	290	234	261	12.4102
UUUUGUUUUUGAAGUAAAAGAUGGAAC	chr2:158630321-158630631(-)$1	310	77	104	17.9776
CUAGCUUCAGAAGUACCUGAGGUGCCU	chr7:23469184-23469497(-)$1	313	67	94	13.8053
AGACUUAGGAAAUUUUGACUCCUGAGU	chr15:62323778-62324079(-)$1	301	21	48	14.1339
UAUAAUACUUAAUGAAGAAGUGUUAUA	chr3:160129826-160130049(+)$1	223	128	155	12.2956
aaauguuuugaauguuuaaagacauuu	chr8:130533960-130534183(-)$1	223	113	140	12.6845

#DB
(((((...((......))..))).)))	chr6:132027686-132027963(+)$1	1	52	79	11.0682
(((..(((((......))))).)))..	chr7:156979284-156979604(+)$1	1	155	182	11.8657
.(((((((((((....)))))))))))	chr12:105510782-105511040(+)$1	1	134	161	14.9174
..((((((((((...))))))))))..	chr12:102556794-102557102(+)$1	1	34	61	15.2463
((((((((((.........))))))))	chr17:21541451-21541719(+)$1	1	169	196	14.1339
((((((((((......)))))))))))	chr1:167944196-167944462(+)$1	1	115	142	17.9776
((((((((((((....)))))))))))	chr13:76250077-76250417(+)$1	1	247	274	15.0297
((((((((((......)))))))))))	chr15:58992244-58992483(-)$1	1	210	237	17.9776
((((((((((....)))))))))).((	chr10:121340856-121341088(-)$1	1	29	56	12.4663
(...(((((((.....)))))))....	chr7:156484442-156484734(-)$1	1	52	79	10.9675
((.(...(((......)))....).))	chr7:104961736-104962001(-)$1	1	19	46	12.8172
((.((((.((......)).))))))))	chr2:178252360-178252631(-)$1	1	154	181	11.1532
(((((((((.(....)..)))))))))	chr5:139818169-139818473(+)$1	1	38	65	13.8568
((.((((((((((...)))))))))).	chr21:34958408-34958670(-)$1	1	114	141	14.3871
((..((((.(......).))))..)))	chr3:130452161-130452440(-)$1	1	116	143	11.4717
.(((((((((((....)))))))))))	chr6:111121174-111121435(-)$1	1	195	222	14.9711
((.(((((((......))))))).)))	chr4:129964268-129964591(-)$1	1	176	203	13.1021
.(((((((((......))).).)))))	chr5:167925318-167925586(+)$1	1	140	167	11.7773
((((...(((......)))..))))))	chr10:94745691-94745953(+)$1	1	67	94	15.9201
((((((.(((......))).)))))))	chr12:69643406-69643652(+)$1	1	85	112	15.6164
((((...(((......))).)))))).	chr4:71842039-71842272(+)$1	1	136	163	11.1356
(((((((((((....))))))))))).	chr4:151417838-151418119(-)$1	1	0	27	13.8079
)))))(((((......)))))(((((.	chr17:30697379-30697626(+)$1	1	156	183	11.0510
((((((..((......))))))))).)	chr7:26239051-26239269(-)$1	1	20	47	13.3003
(.(((.((((......)))).))).))	chr11:107288011-107288334(-)$1	1	18	45	11.2512
((((((((((((....)))))))))))	chr11:120208510-120208809(+)$1	1	63	90	15.0297
(((((((.(((.....)))..))))))	chr4:123992567-123992881(+)$1	1	5	32	10.9512
((((((((((.........))))))))	chr7:152112453-152112757(-)$1	1	223	250	14.1339
((((((((((......)))))))))).	chr2:172584915-172585172(+)$1	1	207	234	17.9216
(....(((((......)))))...)))	chr11:34118197-34118482(+)$1	1	60	87	11.7608
(((((((((((.....)))))))))))	chr2:32704209-32704461(+)$1	1	24	51	15.5496
...((((((((((...)))))))))).	chr1:235306964-235307267(-)$1	1	212	239	15.0188
(((..(.(((......))).)..))))	chr1:109299547-109299823(+)$1	1	229	256	14.9297
.((((((((((....)))))))))).)	chr1:207862431-207862694(+)$1	1	159	186	14.4181
((((((.(((.....)))..)))))))	chr2:231936076-231936402(+)$1	1	243	270	12.1219
(((((((((((....)).)))))))))	chr5:132091616-132091888(-)$1	1	0	27	11.7133
((((....((......))....)))))	chr2:120624320-120624639(+)$1	1	202	229	11.5723
.(((..((((......))))..))).)	chr7:17937807-17938059(-)$1	1	13	40	11.2168
((.....(((......)))...)))).	chr9:96941540-96941849(+)$1	1	198	225	11.4182
((((.(((((......)))))...)))	chr8:100733642-100733959(+)$1	1	162	189	12.5938
(((((((((((.....)))))))))..	chr11:47827982-47828290(-)$1	1	93	120	12.4364
(((((((((((.....)))))))))))	chr6:69455371-69455643(+)$1	1	149	176	15.5496
(((((...((......))...))))))	chr6:82949505-82949776(-)$1	1	60	87	11.4810
(..(.(((.(......)))).)..)..	chr7:32628127-32628417(+)$1	1	234	261	12.4102
((((((((((......)))))))))))	chr2:158630321-158630631(-)$1	1	77	104	17.9776
...(((((((......)))))))...)	chr7:23469184-23469497(-)$1	1	67	94	13.8053
((((((((((.........))))))))	chr15:62323778-62324079(-)$1	1	21	48	14.1339
((((((((((.......))))))))))	chr3:160129826-160130049(+)$1	1	128	155	12.2956
(((((((((.........)))))))))	chr8:130533960-130534183(-)$1	1	113	140	12.6845

#PSSM
= : 0.34	g : 0.12	f : 0.08	[ : 0.08	i : 0.08	d : 0.06	c : 0.04	! : 0.04	b : 0.04	e : 0.04	" : 0.02	a : 0.02	# : 0.02	
= : 0.40	g : 0.12	i : 0.08	d : 0.06	f : 0.06	c : 0.04	! : 0.04	" : 0.04	b : 0.04	e : 0.04	# : 0.04	[ : 0.02	
= : 0.42	i : 0.10	c : 0.08	[ : 0.08	g : 0.08	" : 0.04	! : 0.04	e : 0.04	f : 0.04	# : 0.04	$ : 0.02	
= : 0.44	g : 0.12	i : 0.10	c : 0.06	! : 0.06	a : 0.04	e : 0.04	f : 0.04	" : 0.02	d : 0.02	# : 0.02	$ : 0.02	
= : 0.42	g : 0.12	i : 0.10	! : 0.06	" : 0.06	c : 0.04	d : 0.04	# : 0.04	[ : 0.04	e : 0.02	$ : 0.02	f : 0.02	
= : 0.42	" : 0.10	e : 0.10	g : 0.10	i : 0.10	d : 0.04	[ : 0.02	a : 0.02	# : 0.02	! : 0.02	$ : 0.02	c : 0.02	
= : 0.42	" : 0.10	e : 0.08	g : 0.08	d : 0.08	[ : 0.06	i : 0.06	a : 0.02	! : 0.02	# : 0.02	$ : 0.02	c : 0.02	
= : 0.42	c : 0.18	e : 0.08	g : 0.06	d : 0.06	i : 0.06	" : 0.04	[ : 0.04	! : 0.02	# : 0.02	
= : 0.42	c : 0.18	b : 0.10	e : 0.08	g : 0.06	i : 0.06	[ : 0.04	d : 0.04	
= : 0.40	c : 0.18	b : 0.12	e : 0.08	g : 0.06	a : 0.04	d : 0.04	[ : 0.02	i : 0.02	r : 0.02	
o : 0.53	= : 0.22	r : 0.08	m : 0.02	g : 0.02	a : 0.02	c : 0.02	n : 0.02	b : 0.02	i : 0.02	p : 0.02	
o : 0.53	= : 0.14	n : 0.12	m : 0.10	r : 0.08	p : 0.02	
o : 0.53	m : 0.18	n : 0.12	r : 0.08	= : 0.04	l : 0.02	p : 0.02	
o : 0.53	m : 0.18	n : 0.12	r : 0.08	l : 0.06	p : 0.02	
o : 0.53	m : 0.16	n : 0.12	r : 0.08	l : 0.06	= : 0.02	p : 0.02	
o : 0.53	n : 0.10	m : 0.08	= : 0.08	r : 0.08	l : 0.04	a : 0.02	c : 0.02	b : 0.02	p : 0.02	
= : 0.32	c : 0.18	b : 0.12	e : 0.08	r : 0.08	g : 0.06	a : 0.04	d : 0.04	2 : 0.02	i : 0.02	p : 0.02	
= : 0.34	c : 0.20	b : 0.10	e : 0.08	r : 0.08	g : 0.06	] : 0.04	d : 0.04	2 : 0.02	i : 0.02	
= : 0.36	c : 0.18	e : 0.08	g : 0.08	r : 0.06	d : 0.06	i : 0.06	2 : 0.04	] : 0.02	4 : 0.02	3 : 0.02	
= : 0.42	2 : 0.08	e : 0.08	g : 0.08	d : 0.08	] : 0.08	i : 0.06	4 : 0.04	3 : 0.04	c : 0.02	
= : 0.42	i : 0.10	e : 0.08	g : 0.08	2 : 0.06	4 : 0.04	d : 0.04	a : 0.04	] : 0.04	3 : 0.04	c : 0.02	f : 0.02	
= : 0.44	g : 0.10	i : 0.10	3 : 0.06	c : 0.04	] : 0.04	4 : 0.04	d : 0.04	f : 0.04	2 : 0.04	e : 0.02	a : 0.02	
= : 0.44	g : 0.10	i : 0.10	c : 0.08	2 : 0.06	e : 0.06	d : 0.04	f : 0.04	3 : 0.04	4 : 0.02	
= : 0.46	i : 0.10	c : 0.06	g : 0.06	e : 0.06	3 : 0.06	] : 0.04	2 : 0.04	f : 0.04	4 : 0.02	a : 0.02	d : 0.02	
= : 0.44	g : 0.10	i : 0.10	e : 0.08	f : 0.06	d : 0.04	c : 0.04	] : 0.04	: : 0.02	4 : 0.02	a : 0.02	3 : 0.02	
= : 0.40	e : 0.10	g : 0.08	i : 0.08	3 : 0.06	f : 0.06	] : 0.06	d : 0.04	2 : 0.04	4 : 0.02	b : 0.02	c : 0.02	
= : 0.32	e : 0.10	g : 0.08	i : 0.08	3 : 0.06	b : 0.06	f : 0.06	2 : 0.06	4 : 0.04	: : 0.04	d : 0.02	] : 0.02	[ : 0.02	c : 0.02	

#score	660.3955758728229
#seq	49
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_UTR_m1_run1.txt

#BEAR
e[a[ddddyyyyyyyyyyyyyyyyddd	chr2:197657587-197657898(-)$1	311	71	98	21.8940
%%%%cccyyyyyyyyyyyyyyyyccc6	chr5:54645288-54645581(+)$1	293	234	261	19.9832
b####ccc^^^^^^^^^^^^^^^^^^^	chr5:154172211-154172459(+)$1	248	27	54	16.9273
eee!!ddddvvvvvvvvvvvvvdddd3	chr2:47388758-47389081(-)$1	323	241	268	23.2094
fffdddd[ccctttttttttttccc]d	chr5:148880458-148880792(-)$1	334	192	219	21.0830
:ffffff[bbuuuuuuuuuuuubb]ff	chr3:142735581-142735803(+)$1	222	152	179	21.4102
iiiiiii[avvvvvvvvvvvvvaiiii	chr2:172582023-172582307(+)$1	284	210	237	23.9877
Cccc!!bbwwwwwwwwwwwwwwbbccc	chr17:48820966-48821221(+)$1	255	115	142	21.1863
:ffffffyyyyyyyyyyyyyyyyffff	chr2:29169490-29169778(+)$1	288	167	194	20.9023
iiii!!cccvvvvvvvvvvvvvccc]i	chr16:11931694-11931962(-)$1	268	231	258	24.2728
hh$$$$$cccuuuuuuuuuuuuccc55	chr14:31425244-31425533(-)$1	289	19	46	21.0539
[ccc[ddddvvvvvvvvvvvvvdddd3	chr19:8531015-8531242(+)$1	227	171	198	23.2953
bb:eeeeewwwwwwwwwwwwwweeeee	chr11:93470121-93470385(-)$1	264	183	210	20.8866
ffff[a!!ccctttttttttttccca]	chr3:142761886-142762160(+)$1	274	131	158	21.8810
fffff[dddduuuuuuuuuuuuddddf	chr18:55282945-55283207(-)$1	262	73	100	22.2543
ee!!ccc^^^^^^^^^^^^^^^^^^^^	chrX:20173157-20173436(-)$1	279	191	218	16.8246
[cccccc[attttttttttta]ccc33	chr7:134632261-134632621(+)$1	360	12	39	21.9753
b"""eeeeettttttttttteeeee33	chr12:123466179-123466499(+)$1	320	202	229	20.6433
!!ccc!!cccuuuuuuuuuuuuccc>>	chr5:140083993-140084257(+)$1	264	178	205	23.4644
cc[eeeee^^^^^^^^^^^^^^^^^^^	chr17:7082242-7082503(-)$1	261	114	141	16.5191
hhhhhhh[bbuuuuuuuuuuuubb]hh	chr20:34319759-34319992(-)$1	233	178	205	20.6608
""ffffffyyyyyyyyyyyyyyyyfff	chr1:150198843-150199132(-)$1	289	138	165	21.7935
gggg[ddddvvvvvvvvvvvvvddddg	chr20:34317289-34317550(-)$1	261	83	110	23.3299
:ccc[ddddtttttttttttdddd]cc	chr1:1325738-1326027(-)$1	289	147	174	19.5191
====ffffffuuuuuuuuuuuufffff	chr7:139094218-139094506(+)$1	288	211	238	22.4412
=[gggggggvvvvvvvvvvvvvggggg	chr17:76183350-76183616(+)$1	266	12	39	23.6478
a[gggggggtttttttttttggggggg	chr16:69681313-69681590(+)$1	277	153	180	20.5070
gggg:ddddwwwwwwwwwwwwwwdddd	chr16:89348391-89348699(-)$1	308	55	82	21.6098
eea[ffffffuuuuuuuuuuuufffff	chr2:27592254-27592521(-)$1	267	50	77	22.2144
cc!!ccc"""attttttttttta333c	chr2:27592182-27592454(-)$1	272	233	260	22.4780
::gggggggvvvvvvvvvvvvvggggg	chr21:34931863-34932180(+)$1	317	168	195	21.7417
gggggggyyyyyyyyyyyyyyyygggg	chr17:48829447-48829695(+)$1	248	36	63	22.5054
cccffffffwwwwwwwwwwwwwwffff	chr2:232577058-232577275(+)$1	217	84	111	22.2834
ccc[ffffffuuuuuuuuuuuufffff	chr3:50099370-50099642(+)$1	272	159	186	22.3495
))))))cccvvvvvvvvvvvvvccc88	chr14:102551125-102551383(-)$1	258	54	81	20.9429
++++++cccuuuuuuuuuuuuccc>>>	chr9:139734670-139734893(+)$1	223	109	136	19.1442
eeeee"""bbtttttttttttbb333e	chr14:73572822-73573093(+)$1	271	92	119	20.3769
f####cccxxxxxxxxxxxxxxxccc2	chr11:129991501-129991803(+)$1	302	180	207	19.6058
gggggdddduuuuuuuuuuuudddd]g	chr1:46072982-46073280(+)$1	298	257	284	22.5773
ggggggggxxxxxxxxxxxxxxxgggg	chr7:23561678-23561975(-)$1	297	198	225	19.5578
cc[ccca[ccctttttttttttccc]a	chr1:52252106-52252402(+)$1	296	143	170	21.9801
fff"""eeeeettttttttttteeeee	chr10:102289471-102289723(-)$1	252	76	103	20.4592
=========wwwwwwwwwwwwww====	chr1:185275539-185275882(-)$1	343	51	78	23.5256
=========vvvvvvvvvvvvv=====	chr3:101308958-101309210(+)$1	252	77	104	23.9581
ffffff!!bbyyyyyyyyyyyyyyyyb	chr5:74077175-74077482(-)$1	307	241	268	19.7200
eeee[bb[ccctttttttttttccc]b	chr3:52724589-52724820(+)$1	231	177	204	20.9011
:::ccccccvvvvvvvvvvvvvccc44	chr2:188418825-188419171(-)$1	346	168	195	21.3486
ffff[a!!ccctttttttttttccca]	chr3:142761852-142762086(+)$1	234	165	192	21.8810
gg[ffffffvvvvvvvvvvvvvfffff	chr3:40503027-40503252(+)$1	225	177	204	22.8528
ffff:ddddwwwwwwwwwwwwwwdddd	chr17:62523162-62523502(+)$1	340	222	249	21.2209
========^^^^^^^^^^^^^^^^^^^	chr18:19208921-19209213(+)$1	292	2	29	17.1470
=====:cccvvvvvvvvvvvvvccccc	chr2:232327818-232328124(-)$1	306	94	121	23.1834
ee!!eeeeettttttttttteeeeeee	chr4:113568222-113568559(+)$1	337	276	303	20.2441
b####ddddwwwwwwwwwwwwwwdddd	chr19:5600026-5600360(-)$1	334	92	119	22.5728
gggggggccctttttttttttccc]gg	chr3:142741234-142741597(+)$1	363	264	291	22.1109
ddd[ddddwwwwwwwwwwwwwwdddd]	chr12:108923825-108924194(-)$1	369	130	157	21.9775
eeebb[cccwwwwwwwwwwwwwwccc]	chr17:74731023-74731348(-)$1	325	83	110	22.6046
eee[eeeeeuuuuuuuuuuuueeeee]	chr17:73664511-73664806(+)$1	295	230	257	22.1933
:gggggggwwwwwwwwwwwwwwggggg	chr14:73566274-73566563(+)$1	289	75	102	22.2830
ee!!eeeeeuuuuuuuuuuuueeeeee	chr5:891228-891503(-)$1	275	233	260	22.2935
b!!eeeeexxxxxxxxxxxxxxxeeee	chr15:69072373-69072582(-)$1	209	162	189	18.8554

#otherMatches

#Seq PSSM
CAUGCUUGGAGAGAAUGAAGAUGAUga	chr2:197657587-197657898(-)$1	311	71	98	21.8940
GAUUGCAUAUAUUCACUUUACAUUGCU	chr5:54645288-54645581(+)$1	293	234	261	19.9832
GAACAGGAGAAAGGAGAAGGGAGUGAU	chr5:154172211-154172459(+)$1	248	27	54	16.9273
CUCAUUCUUCACUUUGAUUUUUAAGAU	chr2:47388758-47389081(-)$1	323	241	268	23.2094
GGGAAAGAAUCAAUUAUAAACAGGUAU	chr5:148880458-148880792(-)$1	334	192	219	21.0830
AGAUUUGCAGAUCAAAAAAAUCCUCCA	chr3:142735581-142735803(+)$1	222	152	179	21.4102
GAAUUAAACUUUAAAACAUUUUGUUGA	chr2:172582023-172582307(+)$1	284	210	237	23.9877
UCUGAAGGAAAAGUAGAAGAAGCCCAG	chr17:48820966-48821221(+)$1	255	115	142	21.1863
AAGCCGGUCAAACUAUAUAAACUCUGG	chr2:29169490-29169778(+)$1	288	167	194	20.9023
UUUCACCACUCCUAGUAAAUCUGUGAG	chr16:11931694-11931962(-)$1	268	231	258	24.2728
CCAUUUUUCAGUUUCCUAUGUAUGGUU	chr14:31425244-31425533(-)$1	289	19	46	21.0539
AGACAUUCUUGAAGAUAAAGAUGGAAA	chr19:8531015-8531242(+)$1	227	171	198	23.2953
GUAAUAGGUUAUAAAUUAAAUUUCUAU	chr11:93470121-93470385(-)$1	264	183	210	20.8866
AUUUGUACUCUAAUCCAAUCAAAGAAG	chr3:142761886-142762160(+)$1	274	131	158	21.8810
AUGUUAUUUCUAAAUCACAGUUGAAGA	chr18:55282945-55283207(-)$1	262	73	100	22.2543
UGAAUACCACCUAAAAAUACACUGAAU	chrX:20173157-20173436(-)$1	279	191	218	16.8246
GGCCAGCGUGGACACCAAGGAGGCUGA	chr7:134632261-134632621(+)$1	360	12	39	21.9753
UGGACCAGUGGCACCGAUCAGCUGGGG	chr12:123466179-123466499(+)$1	320	202	229	20.6433
CCUUCCCCUCUCCCCCAGAUUUGAGUU	chr5:140083993-140084257(+)$1	264	178	205	23.4644
CCUGGGAGGGGAUGGAGGAAAGAAGAA	chr17:7082242-7082503(-)$1	261	114	141	16.5191
UUCAGAUGGCAGUUUAACUUGAGUGAU	chr20:34319759-34319992(-)$1	233	178	205	20.6608
GGGAGAGGGAGAAGAGGAAGUGGGCCU	chr1:150198843-150199132(-)$1	289	138	165	21.7935
UUUGUGUUUCCUUUUUAGCUCCGGACC	chr20:34317289-34317550(-)$1	261	83	110	23.3299
GAAAUCUGCUUAAAGAUCUUGCAGCUU	chr1:1325738-1326027(-)$1	289	147	174	19.5191
UUGAAUCUCUGUGGUUCUAAAAAGAGA	chr7:139094218-139094506(+)$1	288	211	238	22.4412
GGUCCGCCCACCAAGUUUAAAGGGGCG	chr17:76183350-76183616(+)$1	266	12	39	23.6478
GGCAACUCAAAAGCGGGAAAUGGGUUG	chr16:69681313-69681590(+)$1	277	153	180	20.5070
GAACCUUCCAAGAAAAUAGAAAAGGAA	chr16:89348391-89348699(-)$1	308	55	82	21.6098
UUUGUUCCCCUUUGGAAUUGUUGGGGA	chr2:27592254-27592521(-)$1	267	50	77	22.2144
GAGAGAUAAGGGAGAGACAGGACAAAG	chr2:27592182-27592454(-)$1	272	233	260	22.4780
AAGAAAACAAAGAUGAUGAUAAUGUUU	chr21:34931863-34932180(+)$1	317	168	195	21.7417
GGGCCAACACUUUCUCAUAAAAAUUGG	chr17:48829447-48829695(+)$1	248	36	63	22.5054
UUCUCUCCAGGUGAGGAAGAGGAUGGA	chr2:232577058-232577275(+)$1	217	84	111	22.2834
GGAGUGACGAGGGUAAGAGGAAUUGUU	chr3:50099370-50099642(+)$1	272	159	186	22.3495
AAGGAACGUGAUAAAGAAGUAAGCGAU	chr14:102551125-102551383(-)$1	258	54	81	20.9429
gaaaaagcugccaagaagaagagcaaa	chr9:139734670-139734893(+)$1	223	109	136	19.1442
UUGGGAAAUCAGAGAACGAAAGAAAAC	chr14:73572822-73573093(+)$1	271	92	119	20.3769
ggaagaCUAUGAUGUUUAUAAAAGGUA	chr11:129991501-129991803(+)$1	302	180	207	19.6058
AGAAGGACCGAAUGAAGCUGAGGUCAC	chr1:46072982-46073280(+)$1	298	257	284	22.5773
GAAUCUGGAAGAAUGAAUGGGUCCUAG	chr7:23561678-23561975(-)$1	297	198	225	19.5578
UGAGGAAGUUGGAAGAUCAGAACGAGU	chr1:52252106-52252402(+)$1	296	143	170	21.9801
UUUGCGCAUGUGCAGAAGGGAAACGUG	chr10:102289471-102289723(-)$1	252	76	103	20.4592
UUUUUGCUUUAAAUUUGACAAGUAGGU	chr1:185275539-185275882(-)$1	343	51	78	23.5256
GGUUUACUUACUUUUUUCUUUAGAGUG	chr3:101308958-101309210(+)$1	252	77	104	23.9581
GUUGUUGUUUUUAAAAUAUGGUAAUUA	chr5:74077175-74077482(-)$1	307	241	268	19.7200
UGAAAUAUGAUGAGUGUACAAAAUCUU	chr3:52724589-52724820(+)$1	231	177	204	20.9011
CCUGGAAGGAAAAACAAAAUAACCUCA	chr2:188418825-188419171(-)$1	346	168	195	21.3486
AUUUGUACUCUAAUCCAAUCAAAGAAG	chr3:142761852-142762086(+)$1	234	165	192	21.8810
GCAGUAGCCAAAUCCCAUUUCAGGCUG	chr3:40503027-40503252(+)$1	225	177	204	22.8528
ACUUACCCCAGAGAGACUGAGAAGGGG	chr17:62523162-62523502(+)$1	340	222	249	21.2209
AUAAACAGGGAAAGGUGUGUGUGUAAA	chr18:19208921-19209213(+)$1	292	2	29	17.1470
UAGGCAGGUAAAAAUCAAGGUGACCCC	chr2:232327818-232328124(-)$1	306	94	121	23.1834
AGUCCACUGAACCCCAAAAGCAGUGCU	chr4:113568222-113568559(+)$1	337	276	303	20.2441
UGUAAUUAAGAAGGAAGAGAAGAUUGA	chr19:5600026-5600360(-)$1	334	92	119	22.5728
UGAAUGGUAAGAACAUUUUUAUUAUCC	chr3:142741234-142741597(+)$1	363	264	291	22.1109
UGUGCAGCAAGAAGAAGAAAAGGCUGA	chr12:108923825-108924194(-)$1	369	130	157	21.9775
UGAACUUCUUUCUUUUCAAACCUAGAU	chr17:74731023-74731348(-)$1	325	83	110	22.6046
ACAAUUUCAUUUGUCAGAUUUUGGAAC	chr17:73664511-73664806(+)$1	295	230	257	22.1933
CCCUCCUGUGCCCGUUUUCUUUUAGGA	chr14:73566274-73566563(+)$1	289	75	102	22.2830
GGCAAGGGUGCACUUUUAGAGACUCUC	chr5:891228-891503(-)$1	275	233	260	22.2935
AGUGGAAUAACCUAUUUUGAAAAAUUC	chr15:69072373-69072582(-)$1	209	162	189	18.8554

#DB
(.(.((((................)))	chr2:197657587-197657898(-)$1	1	71	98	21.8940
....(((................))).	chr5:54645288-54645581(+)$1	1	234	261	19.9832
(....(((...................	chr5:154172211-154172459(+)$1	1	27	54	16.9273
(((..((((.............)))).	chr2:47388758-47389081(-)$1	1	241	268	23.2094
(((((((.(((...........))).)	chr5:148880458-148880792(-)$1	1	192	219	21.0830
.((((((.((............)).))	chr3:142735581-142735803(+)$1	1	152	179	21.4102
(((((((.(.............)))))	chr2:172582023-172582307(+)$1	1	210	237	23.9877
)(((..((..............)))))	chr17:48820966-48821221(+)$1	1	115	142	21.1863
.((((((................))))	chr2:29169490-29169778(+)$1	1	167	194	20.9023
((((..(((.............))).)	chr16:11931694-11931962(-)$1	1	231	258	24.2728
((.....(((............)))..	chr14:31425244-31425533(-)$1	1	19	46	21.0539
.(((.((((.............)))).	chr19:8531015-8531242(+)$1	1	171	198	23.2953
)).(((((..............)))))	chr11:93470121-93470385(-)$1	1	183	210	20.8866
((((.(..(((...........)))).	chr3:142761886-142762160(+)$1	1	131	158	21.8810
(((((.((((............)))))	chr18:55282945-55283207(-)$1	1	73	100	22.2543
((..(((....................	chrX:20173157-20173436(-)$1	1	191	218	16.8246
.((((((.(...........).)))..	chr7:134632261-134632621(+)$1	1	12	39	21.9753
(...(((((...........)))))..	chr12:123466179-123466499(+)$1	1	202	229	20.6433
..(((..(((............)))..	chr5:140083993-140084257(+)$1	1	178	205	23.4644
((.(((((...................	chr17:7082242-7082503(-)$1	1	114	141	16.5191
(((((((.((............)).))	chr20:34319759-34319992(-)$1	1	178	205	20.6608
..((((((................)))	chr1:150198843-150199132(-)$1	1	138	165	21.7935
((((.((((.............)))))	chr20:34317289-34317550(-)$1	1	83	110	23.3299
.(((.((((...........)))).))	chr1:1325738-1326027(-)$1	1	147	174	19.5191
((((((((((............)))))	chr7:139094218-139094506(+)$1	1	211	238	22.4412
(.(((((((.............)))))	chr17:76183350-76183616(+)$1	1	12	39	23.6478
(.(((((((...........)))))))	chr16:69681313-69681590(+)$1	1	153	180	20.5070
)))).((((..............))))	chr16:89348391-89348699(-)$1	1	55	82	21.6098
(((.((((((............)))))	chr2:27592254-27592521(-)$1	1	50	77	22.2144
((..(((...(...........)...)	chr2:27592182-27592454(-)$1	1	233	260	22.4780
..(((((((.............)))))	chr21:34931863-34932180(+)$1	1	168	195	21.7417
(((((((................))))	chr17:48829447-48829695(+)$1	1	36	63	22.5054
(((((((((..............))))	chr2:232577058-232577275(+)$1	1	84	111	22.2834
(((.((((((............)))))	chr3:50099370-50099642(+)$1	1	159	186	22.3495
......(((.............)))..	chr14:102551125-102551383(-)$1	1	54	81	20.9429
......(((............)))...	chr9:139734670-139734893(+)$1	1	109	136	19.1442
(((((...((...........))...)	chr14:73572822-73573093(+)$1	1	92	119	20.3769
(....(((...............))).	chr11:129991501-129991803(+)$1	1	180	207	19.6058
(((((((((............)))).)	chr1:46072982-46073280(+)$1	1	257	284	22.5773
)(((((((...............))))	chr7:23561678-23561975(-)$1	1	198	225	19.5578
((.((((.(((...........))).)	chr1:52252106-52252402(+)$1	1	143	170	21.9801
(((...(((((...........)))))	chr10:102289471-102289723(-)$1	1	76	103	20.4592
(((((((((..............))))	chr1:185275539-185275882(-)$1	1	51	78	23.5256
(((((((((.............)))))	chr3:101308958-101309210(+)$1	1	77	104	23.9581
((((((..((................)	chr5:74077175-74077482(-)$1	1	241	268	19.7200
((((.((.(((...........))).)	chr3:52724589-52724820(+)$1	1	177	204	20.9011
...((((((.............)))..	chr2:188418825-188419171(-)$1	1	168	195	21.3486
((((.(..(((...........)))).	chr3:142761852-142762086(+)$1	1	165	192	21.8810
((.((((((.............)))))	chr3:40503027-40503252(+)$1	1	177	204	22.8528
)))).((((..............))))	chr17:62523162-62523502(+)$1	1	222	249	21.2209
((((((((...................	chr18:19208921-19209213(+)$1	1	2	29	17.1470
))))).(((.............)))((	chr2:232327818-232328124(-)$1	1	94	121	23.1834
((..(((((...........)))))))	chr4:113568222-113568559(+)$1	1	276	303	20.2441
(....((((..............))))	chr19:5600026-5600360(-)$1	1	92	119	22.5728
((((((((((...........))).))	chr3:142741234-142741597(+)$1	1	264	291	22.1109
(((.((((..............)))).	chr12:108923825-108924194(-)$1	1	130	157	21.9775
(((((.(((..............))).	chr17:74731023-74731348(-)$1	1	83	110	22.6046
(((.(((((............))))).	chr17:73664511-73664806(+)$1	1	230	257	22.1933
.(((((((..............)))))	chr14:73566274-73566563(+)$1	1	75	102	22.2830
((..(((((............))))))	chr5:891228-891503(-)$1	1	233	260	22.2935
(..(((((...............))))	chr15:69072373-69072582(-)$1	1	162	189	18.8554

#PSSM
e : 0.16	f : 0.13	g : 0.11	: : 0.09	= : 0.09	b : 0.08	c : 0.08	i : 0.03	h : 0.03	[ : 0.03	% : 0.01	C : 0.01	! : 0.01	" : 0.01	a : 0.01	) : 0.01	+ : 0.01	d : 0.01	
e : 0.14	f : 0.14	c : 0.14	g : 0.13	= : 0.08	[ : 0.04	# : 0.04	i : 0.03	h : 0.03	" : 0.03	! : 0.03	: : 0.03	% : 0.01	b : 0.01	) : 0.01	+ : 0.01	d : 0.01	
f : 0.16	g : 0.16	c : 0.11	e : 0.08	! : 0.08	= : 0.08	# : 0.04	[ : 0.04	a : 0.03	i : 0.03	: : 0.03	% : 0.01	$ : 0.01	" : 0.01	h : 0.01	) : 0.01	+ : 0.01	d : 0.01	
f : 0.16	g : 0.16	c : 0.11	[ : 0.08	! : 0.08	e : 0.08	= : 0.08	# : 0.04	i : 0.03	" : 0.03	% : 0.01	d : 0.01	$ : 0.01	h : 0.01	) : 0.01	+ : 0.01	b : 0.01	
f : 0.16	e : 0.13	g : 0.13	c : 0.11	[ : 0.09	= : 0.06	d : 0.04	# : 0.04	! : 0.04	: : 0.03	i : 0.01	$ : 0.01	h : 0.01	) : 0.01	+ : 0.01	" : 0.01	b : 0.01	
d : 0.18	f : 0.14	c : 0.13	e : 0.11	g : 0.11	! : 0.04	= : 0.04	a : 0.03	[ : 0.03	" : 0.03	i : 0.01	$ : 0.01	h : 0.01	) : 0.01	+ : 0.01	b : 0.01	: : 0.01	
d : 0.19	c : 0.19	f : 0.13	e : 0.13	g : 0.11	! : 0.06	= : 0.04	b : 0.03	i : 0.01	$ : 0.01	h : 0.01	" : 0.01	a : 0.01	
d : 0.18	c : 0.18	e : 0.13	[ : 0.11	f : 0.09	g : 0.08	y : 0.04	! : 0.04	= : 0.04	" : 0.03	b : 0.01	^ : 0.01	
c : 0.22	d : 0.14	y : 0.08	e : 0.08	f : 0.08	^ : 0.06	b : 0.06	w : 0.06	g : 0.04	x : 0.04	a : 0.03	= : 0.03	" : 0.01	
v : 0.19	w : 0.16	c : 0.13	y : 0.08	t : 0.08	^ : 0.06	b : 0.06	u : 0.06	f : 0.04	x : 0.04	d : 0.01	" : 0.01	e : 0.01	
v : 0.19	u : 0.19	w : 0.16	t : 0.11	y : 0.09	c : 0.08	^ : 0.06	x : 0.04	a : 0.01	e : 0.01	
t : 0.22	v : 0.19	u : 0.19	w : 0.16	y : 0.09	^ : 0.06	x : 0.04	
t : 0.22	v : 0.19	u : 0.19	w : 0.16	y : 0.09	^ : 0.06	x : 0.04	
t : 0.22	v : 0.19	u : 0.19	w : 0.16	y : 0.09	^ : 0.06	x : 0.04	
t : 0.22	v : 0.19	u : 0.19	w : 0.16	y : 0.09	^ : 0.06	x : 0.04	
t : 0.22	v : 0.19	u : 0.19	w : 0.16	y : 0.09	^ : 0.06	x : 0.04	
t : 0.22	v : 0.19	u : 0.19	w : 0.16	y : 0.09	^ : 0.06	x : 0.04	
t : 0.22	v : 0.19	u : 0.19	w : 0.16	y : 0.09	^ : 0.06	x : 0.04	
t : 0.22	v : 0.19	u : 0.19	w : 0.16	y : 0.09	^ : 0.06	x : 0.04	
t : 0.22	v : 0.19	u : 0.19	w : 0.16	y : 0.09	^ : 0.06	x : 0.04	
v : 0.19	u : 0.19	w : 0.16	t : 0.14	y : 0.09	^ : 0.06	x : 0.04	e : 0.03	a : 0.01	d : 0.01	g : 0.01	
v : 0.19	w : 0.16	u : 0.13	t : 0.11	y : 0.09	^ : 0.06	e : 0.06	x : 0.04	d : 0.03	c : 0.03	] : 0.01	g : 0.01	b : 0.01	
c : 0.22	d : 0.11	y : 0.09	e : 0.09	w : 0.09	^ : 0.06	b : 0.06	f : 0.06	g : 0.06	x : 0.04	a : 0.03	= : 0.01	
c : 0.27	d : 0.16	e : 0.11	f : 0.09	g : 0.09	^ : 0.06	y : 0.04	b : 0.04	3 : 0.03	= : 0.03	i : 0.01	
c : 0.26	d : 0.16	f : 0.11	e : 0.11	g : 0.09	^ : 0.06	] : 0.06	3 : 0.03	= : 0.03	i : 0.01	> : 0.01	y : 0.01	
d : 0.14	f : 0.13	g : 0.11	c : 0.09	e : 0.09	] : 0.08	^ : 0.06	3 : 0.06	a : 0.03	> : 0.03	= : 0.03	i : 0.01	5 : 0.01	h : 0.01	8 : 0.01	y : 0.01	4 : 0.01	
f : 0.14	g : 0.14	e : 0.09	d : 0.08	] : 0.08	^ : 0.06	3 : 0.06	c : 0.06	i : 0.03	> : 0.03	= : 0.03	b : 0.03	6 : 0.01	5 : 0.01	h : 0.01	8 : 0.01	2 : 0.01	a : 0.01	4 : 0.01	

#score	1306.2563238178207
#seq	61
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890KEE_HNRNPL_UTR_m3_run2.txt

#BEAR
cccooooooccc	chr20:61536447-61536728(-)$1	281	195	207	12.6117
cccooooooccc	chr4:763714-764020(-)$1	306	136	148	12.6117
cccooooooccc	chr16:4737506-4737753(+)$1	247	143	155	12.6117
cccooooooccc	chr11:2152783-2152989(-)$1	206	74	86	12.6117
cccooooooccc	chr11:2152691-2152893(-)$1	202	104	116	12.6117
cccooooooccc	chr11:2153056-2153260(-)$1	204	53	65	12.6117
cccooooooccc	chr11:2152713-2152916(-)$1	203	1	13	12.6117
cccooooooccc	chr11:2152498-2152704(-)$1	206	13	25	12.6117
cccooooooccc	chrX:63409225-63409504(-)$1	279	29	41	12.6117
cccooooooccc	chr11:2152952-2153163(-)$1	211	0	12	12.6117
cccooooooccc	chr3:38183654-38183995(+)$1	341	259	271	12.6117
cccooooooccc	chr11:2152693-2152898(-)$1	205	109	121	12.6117
cccooooooccc	chr19:4172629-4173005(+)$1	376	200	212	12.6117
cccooooooccc	chr11:2152894-2153101(-)$1	207	107	119	12.6117
cccooooooccc	chr4:152042327-152042609(-)$1	282	161	173	12.6117
cccooooooccc	chr11:2152621-2152827(-)$1	206	38	50	12.6117
cccooooooccc	chr11:2152627-2152834(-)$1	207	45	57	12.6117
cccooooooccc	chr11:2152881-2153085(-)$1	204	91	103	12.6117
cccooooooccc	chr11:2152676-2152880(-)$1	204	91	103	12.6117
cccooooooccc	chr21:46915776-46915998(+)$1	222	36	48	12.6117
cccooooooccc	chr11:2152688-2152891(-)$1	203	102	114	12.6117
cccooooooccc	chr11:2152680-2152882(-)$1	202	93	105	12.6117
cccooooooccc	chr13:30779980-30780235(-)$1	255	41	53	12.6117
cccooooooccc	chr11:2152672-2152876(-)$1	204	87	99	12.6117
cccooooooccc	chr11:2153117-2153323(-)$1	206	116	128	12.6117
cccooooooccc	chr11:2152448-2152651(-)$1	203	2	14	12.6117
cccooooooccc	chr12:123997838-123998093(-)$1	255	70	82	12.6117
cccooooooccc	chr4:763600-763895(-)$1	295	11	23	12.6117
cccooooooccc	chr22:20052423-20052725(+)$1	302	93	105	12.6117
cccooooooccc	chr11:2152541-2152752(-)$1	211	61	73	12.6117
cccooooooccc	chr18:32913154-32913444(-)$1	290	81	93	12.6117
cccooooooccc	chr15:75952688-75952974(+)$1	286	117	129	12.6117
cccooooooccc	chr17:34851669-34851978(-)$1	309	65	77	12.6117
cccooooooccc	chr21:46915618-46915838(+)$1	220	194	206	12.6117
cccooooooccc	chr11:2152698-2152905(-)$1	207	116	128	12.6117
cccooooooccc	chr1:10436740-10437001(+)$1	261	125	137	12.6117
cccooooooccc	chr18:32913244-32913494(-)$1	250	131	143	12.6117
cccooooooccc	chr11:2153071-2153279(-)$1	208	72	84	12.6117
cccooooooccc	chr14:25279982-25280244(-)$1	262	122	134	12.6117
cccooooooccc	chr11:2153135-2153341(-)$1	206	134	146	12.6117
cccooooooccc	chr19:6663600-6663822(-)$1	222	122	134	12.6117
cccooooooccc	chr9:99578893-99579181(-)$1	288	16	28	12.6117
cccooooooccc	chr11:2152718-2152921(-)$1	203	6	18	12.6117
cccooooooccc	chr11:2152708-2152913(-)$1	205	124	136	12.6117
cccooooooccc	chr4:1019607-1019847(+)$1	240	3	15	12.6117
cccooooooccc	chr11:2152492-2152697(-)$1	205	48	60	12.6117
cccooooooccc	chr4:1019540-1019807(+)$1	267	61	73	12.6117
cccooooooccc	chr11:2152800-2153003(-)$1	203	88	100	12.6117
cccooooooccc	chr11:2153043-2153250(-)$1	207	43	55	12.6117
cccooooooccc	chr11:2152514-2152722(-)$1	208	31	43	12.6117
cccooooooccc	chr11:2153026-2153231(-)$1	205	24	36	12.6117
cccooooooccc	chr11:2152853-2153056(-)$1	203	62	74	12.6117

#otherMatches

#Seq PSSM
GGCUUUCUUGCC	chr20:61536447-61536728(-)$1	281	195	207	12.6117
CUUUCACUUAAG	chr4:763714-764020(-)$1	306	136	148	12.6117
UGUAGGCAGACG	chr16:4737506-4737753(+)$1	247	143	155	12.6117
gcacacacaugc	chr11:2152783-2152989(-)$1	206	74	86	12.6117
gcacacacaugc	chr11:2152691-2152893(-)$1	202	104	116	12.6117
gcacacacaugc	chr11:2153056-2153260(-)$1	204	53	65	12.6117
gcacacacaugc	chr11:2152713-2152916(-)$1	203	1	13	12.6117
gcacccaccugc	chr11:2152498-2152704(-)$1	206	13	25	12.6117
GUAAUUUUGUGC	chrX:63409225-63409504(-)$1	279	29	41	12.6117
gcacacacaugc	chr11:2152952-2153163(-)$1	211	0	12	12.6117
UGUCCCUGAACA	chr3:38183654-38183995(+)$1	341	259	271	12.6117
gcacacacaugc	chr11:2152693-2152898(-)$1	205	109	121	12.6117
CUGAACAGACAG	chr19:4172629-4173005(+)$1	376	200	212	12.6117
gcacacacaugc	chr11:2152894-2153101(-)$1	207	107	119	12.6117
UCAUUCCUUUGA	chr4:152042327-152042609(-)$1	282	161	173	12.6117
gcacacacaugc	chr11:2152621-2152827(-)$1	206	38	50	12.6117
gcacacacaugc	chr11:2152627-2152834(-)$1	207	45	57	12.6117
gcacacacaugc	chr11:2152881-2153085(-)$1	204	91	103	12.6117
gcacacacaugc	chr11:2152676-2152880(-)$1	204	91	103	12.6117
GCCCUCCCUGGC	chr21:46915776-46915998(+)$1	222	36	48	12.6117
gcacacacaugc	chr11:2152688-2152891(-)$1	203	102	114	12.6117
gcacacacaugc	chr11:2152680-2152882(-)$1	202	93	105	12.6117
gcccacauuggc	chr13:30779980-30780235(-)$1	255	41	53	12.6117
gcacacacaugc	chr11:2152672-2152876(-)$1	204	87	99	12.6117
gcacacacaugc	chr11:2153117-2153323(-)$1	206	116	128	12.6117
CCACAAAAUUGG	chr11:2152448-2152651(-)$1	203	2	14	12.6117
GCCCAGGAAGGU	chr12:123997838-123998093(-)$1	255	70	82	12.6117
CUUUCACUUAAG	chr4:763600-763895(-)$1	295	11	23	12.6117
gcacacacaugc	chr22:20052423-20052725(+)$1	302	93	105	12.6117
gcacccaccugc	chr11:2152541-2152752(-)$1	211	61	73	12.6117
ACUUACCACAGU	chr18:32913154-32913444(-)$1	290	81	93	12.6117
CGAAUGUAAUCG	chr15:75952688-75952974(+)$1	286	117	129	12.6117
GCUACAUCAAGC	chr17:34851669-34851978(-)$1	309	65	77	12.6117
GCCCUCCCUGGC	chr21:46915618-46915838(+)$1	220	194	206	12.6117
gcacacacaugc	chr11:2152698-2152905(-)$1	207	116	128	12.6117
CCUAACAAAAGG	chr1:10436740-10437001(+)$1	261	125	137	12.6117
ACUUACCACAGU	chr18:32913244-32913494(-)$1	250	131	143	12.6117
gcacacacaugc	chr11:2153071-2153279(-)$1	208	72	84	12.6117
UCUCAGUUCAGA	chr14:25279982-25280244(-)$1	262	122	134	12.6117
gcacacacaugc	chr11:2153135-2153341(-)$1	206	134	146	12.6117
GUCACAGACGGC	chr19:6663600-6663822(-)$1	222	122	134	12.6117
GUCACAUAGGAC	chr9:99578893-99579181(-)$1	288	16	28	12.6117
gcacacacaugc	chr11:2152718-2152921(-)$1	203	6	18	12.6117
gcacacacaugc	chr11:2152708-2152913(-)$1	205	124	136	12.6117
CAGAUAAUGCUG	chr4:1019607-1019847(+)$1	240	3	15	12.6117
CCACAAAAUUGG	chr11:2152492-2152697(-)$1	205	48	60	12.6117
CUGGACACACAG	chr4:1019540-1019807(+)$1	267	61	73	12.6117
gcacacacaugc	chr11:2152800-2153003(-)$1	203	88	100	12.6117
gcacacacaugc	chr11:2153043-2153250(-)$1	207	43	55	12.6117
gcacccaccugc	chr11:2152514-2152722(-)$1	208	31	43	12.6117
gcacacacaugc	chr11:2153026-2153231(-)$1	205	24	36	12.6117
gcacacacaugc	chr11:2152853-2153056(-)$1	203	62	74	12.6117

#DB
(((......)))	chr20:61536447-61536728(-)$1	1	195	207	12.6117
(((......)))	chr4:763714-764020(-)$1	1	136	148	12.6117
(((......)))	chr16:4737506-4737753(+)$1	1	143	155	12.6117
(((......)))	chr11:2152783-2152989(-)$1	1	74	86	12.6117
(((......)))	chr11:2152691-2152893(-)$1	1	104	116	12.6117
(((......)))	chr11:2153056-2153260(-)$1	1	53	65	12.6117
(((......)))	chr11:2152713-2152916(-)$1	1	1	13	12.6117
(((......)))	chr11:2152498-2152704(-)$1	1	13	25	12.6117
(((......)))	chrX:63409225-63409504(-)$1	1	29	41	12.6117
(((......)))	chr11:2152952-2153163(-)$1	1	0	12	12.6117
(((......)))	chr3:38183654-38183995(+)$1	1	259	271	12.6117
(((......)))	chr11:2152693-2152898(-)$1	1	109	121	12.6117
(((......)))	chr19:4172629-4173005(+)$1	1	200	212	12.6117
(((......)))	chr11:2152894-2153101(-)$1	1	107	119	12.6117
(((......)))	chr4:152042327-152042609(-)$1	1	161	173	12.6117
(((......)))	chr11:2152621-2152827(-)$1	1	38	50	12.6117
(((......)))	chr11:2152627-2152834(-)$1	1	45	57	12.6117
(((......)))	chr11:2152881-2153085(-)$1	1	91	103	12.6117
(((......)))	chr11:2152676-2152880(-)$1	1	91	103	12.6117
(((......)))	chr21:46915776-46915998(+)$1	1	36	48	12.6117
(((......)))	chr11:2152688-2152891(-)$1	1	102	114	12.6117
(((......)))	chr11:2152680-2152882(-)$1	1	93	105	12.6117
(((......)))	chr13:30779980-30780235(-)$1	1	41	53	12.6117
(((......)))	chr11:2152672-2152876(-)$1	1	87	99	12.6117
(((......)))	chr11:2153117-2153323(-)$1	1	116	128	12.6117
(((......)))	chr11:2152448-2152651(-)$1	1	2	14	12.6117
(((......)))	chr12:123997838-123998093(-)$1	1	70	82	12.6117
(((......)))	chr4:763600-763895(-)$1	1	11	23	12.6117
(((......)))	chr22:20052423-20052725(+)$1	1	93	105	12.6117
(((......)))	chr11:2152541-2152752(-)$1	1	61	73	12.6117
(((......)))	chr18:32913154-32913444(-)$1	1	81	93	12.6117
(((......)))	chr15:75952688-75952974(+)$1	1	117	129	12.6117
(((......)))	chr17:34851669-34851978(-)$1	1	65	77	12.6117
(((......)))	chr21:46915618-46915838(+)$1	1	194	206	12.6117
(((......)))	chr11:2152698-2152905(-)$1	1	116	128	12.6117
(((......)))	chr1:10436740-10437001(+)$1	1	125	137	12.6117
(((......)))	chr18:32913244-32913494(-)$1	1	131	143	12.6117
(((......)))	chr11:2153071-2153279(-)$1	1	72	84	12.6117
(((......)))	chr14:25279982-25280244(-)$1	1	122	134	12.6117
(((......)))	chr11:2153135-2153341(-)$1	1	134	146	12.6117
(((......)))	chr19:6663600-6663822(-)$1	1	122	134	12.6117
(((......)))	chr9:99578893-99579181(-)$1	1	16	28	12.6117
(((......)))	chr11:2152718-2152921(-)$1	1	6	18	12.6117
(((......)))	chr11:2152708-2152913(-)$1	1	124	136	12.6117
(((......)))	chr4:1019607-1019847(+)$1	1	3	15	12.6117
(((......)))	chr11:2152492-2152697(-)$1	1	48	60	12.6117
(((......)))	chr4:1019540-1019807(+)$1	1	61	73	12.6117
(((......)))	chr11:2152800-2153003(-)$1	1	88	100	12.6117
(((......)))	chr11:2153043-2153250(-)$1	1	43	55	12.6117
(((......)))	chr11:2152514-2152722(-)$1	1	31	43	12.6117
(((......)))	chr11:2153026-2153231(-)$1	1	24	36	12.6117
(((......)))	chr11:2152853-2153056(-)$1	1	62	74	12.6117

#PSSM
c : 1.00	
c : 1.00	
c : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	

#score	655.8135540528001
#seq	52
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_transcript_m3_run2.txt

#BEAR
fffffoooooofffff	chr8:48701618-48701849(-)$1	231	174	190	9.6677
gggggooooooggggg	chr13:33344232-33344545(+)$1	313	280	296	10.3222
!!cccooooooccc22	chr10:120803465-120803704(-)$1	239	146	162	10.7550
eee[aooooooa]eee	chr3:123418933-123419254(-)$1	321	169	185	10.2889
eeeeeooooooeeeee	chr1:93307221-93307431(+)$1	210	173	189	10.8284
eeeeeooooooeeeee	chr12:133358893-133359181(-)$1	288	165	181	10.8284
Cddddoooooodddd:	chr5:145850104-145850413(+)$1	309	162	178	9.6954
fffffoooooofffff	chr8:48767818-48768033(-)$1	215	148	164	9.6677
[ddddoooooodddd]	chr8:124348627-124348873(-)$1	246	41	57	11.7047
f[cccoooooocccff	chr3:184046346-184046586(+)$1	240	144	160	10.6069
:ddddoooooodddd:	chr2:47389322-47389598(-)$1	276	35	51	9.9355
eeeeeooooooeeeee	chr7:134625757-134626050(+)$1	293	246	262	10.8284
eeeeeooooooeeeee	chr3:58154085-58154348(+)$1	263	193	209	10.8284
e[cccooooooccc33	chr2:242174805-242175096(-)$1	291	74	90	10.9100
!!cccooooooccc]a	chr14:56128150-56128431(+)$1	281	30	46	11.0139
:ddddooooooddddB	chr8:48715922-48716140(-)$1	218	52	68	9.8582
:ddddoooooodddd:	chr14:56094532-56094784(+)$1	252	235	251	9.9355
d[cccoooooocccdd	chr2:54150085-54150302(-)$1	217	90	106	10.7380
fffffoooooofffff	chr9:131370157-131370388(+)$1	231	73	89	9.6677
"ddddooooooddddh	chr15:62165344-62165653(-)$1	309	267	283	11.2853
bbcccooooooccc]b	chr1:19478179-19478445(-)$1	266	154	170	9.9731
gggggooooooggggg	chr2:230659876-230660146(-)$1	270	251	267	10.3222
eeeeeooooooeeeee	chr20:49508195-49508437(-)$1	242	209	225	10.8284
eeeeeooooooeeeee	chr20:31020986-31021244(+)$1	258	33	49	10.8284
d[cccooooooccc]d	chr17:42290086-42290398(-)$1	312	207	223	10.5890
eeeeeooooooeeeee	chr13:77785231-77785469(-)$1	238	192	208	10.8284
eeeeeooooooeeeee	chr6:4041007-4041262(+)$1	255	198	214	10.8284
:ddddooooooddddJ	chr1:39844062-39844293(+)$1	231	6	22	9.3416
[ddddooooooddddc	chr1:39763265-39763506(+)$1	241	217	233	11.5808
=====oooooo=====	chr3:184045517-184045759(+)$1	242	215	231	10.4291
:ddddoooooodddd:	chr5:14387751-14388057(+)$1	306	95	111	9.9355
[ddddooooooddddb	chr14:31604100-31604333(-)$1	233	167	183	11.3966
=ddddoooooodddd:	chr12:49435774-49435989(-)$1	215	182	198	10.7659
[ddddoooooodddd]	chr1:39909054-39909302(+)$1	248	117	133	11.7047
!ddddoooooodddd2	chr2:54880645-54880858(+)$1	213	54	70	11.5910
eeeeeooooooeeeee	chr16:2814916-2815184(+)$1	268	21	37	10.8284
[ddddoooooodddd]	chr17:65899840-65900129(+)$1	289	224	240	11.7047
!ddddoooooodddd2	chr2:61575426-61575715(-)$1	289	191	207	11.5910
#ddddoooooodddd5	chr6:64404419-64404755(+)$1	336	212	228	10.8086
"ddddoooooodddd3	chr8:144946870-144947105(-)$1	235	147	163	11.6769
eeeeeooooooeeeee	chr17:4925823-4926106(+)$1	283	96	112	10.8284
dd[bboooooobb]dd	chr7:134617985-134618254(+)$1	269	128	144	9.2748
eeeeeooooooeeeee	chr7:98574519-98574754(+)$1	235	37	53	10.8284
:ddddoooooodddd:	chr6:64394075-64394334(+)$1	259	242	258	9.9355
===bboooooobb]==	chr14:56079102-56079392(+)$1	290	252	268	9.3845
fffffoooooofffff	chr11:9225695-9225965(-)$1	270	247	263	9.6677
!!cccooooooccc22	chr3:121410229-121410488(-)$1	259	87	103	10.7550
GddddooooooddddG	chr10:126673385-126673740(+)$1	355	219	235	10.6218
fffffoooooofffff	chr2:109370186-109370435(+)$1	249	45	61	9.6677
fffffoooooofffff	chr1:39903519-39903779(+)$1	260	242	258	9.6677
iiiiiooooooiiiii	chr2:54882191-54882424(+)$1	233	199	215	10.2016
ddcccooooooccc]d	chr2:242194846-242195096(-)$1	250	31	47	10.6448
cccbboooooobb]cc	chr14:95569995-95570238(-)$1	243	123	139	9.2562
fffffoooooofffff	chr19:50104765-50105081(+)$1	316	89	105	9.6677
!!cccooooooccccc	chr6:26157053-26157326(+)$1	273	192	208	10.9997
!ddddoooooodddd]	chr11:62297632-62297885(-)$1	253	209	225	11.7333
!ddddoooooodddd2	chr2:27606326-27606568(-)$1	242	134	150	11.5910
!!cccooooooccccc	chr9:33295162-33295429(+)$1	267	223	239	10.9997
gggggooooooggggg	chr12:104332048-104332273(+)$1	225	29	45	10.3222
d[cccoooooocccdd	chr12:1372099-1372409(+)$1	310	18	34	10.7380

#otherMatches

#Seq PSSM
AAGUUGGGUAAAACUU	chr8:48701618-48701849(-)$1	231	174	190	9.6677
ACCAAAACCUCUUGGU	chr13:33344232-33344545(+)$1	313	280	296	10.3222
GAGUUGAGGAAAAUAA	chr10:120803465-120803704(-)$1	239	146	162	10.7550
GCAAGAGAGGCCAUGC	chr3:123418933-123419254(-)$1	321	169	185	10.2889
AGCUCAGGAGCGGGCU	chr1:93307221-93307431(+)$1	210	173	189	10.8284
GCUCUUGAAUUAGAGC	chr12:133358893-133359181(-)$1	288	165	181	10.8284
GAGGAGGAGGAUCCUA	chr5:145850104-145850413(+)$1	309	162	178	9.6954
UGAAACAUGUCUUUCA	chr8:48767818-48768033(-)$1	215	148	164	9.6677
UUGACUCACAUGUUAU	chr8:124348627-124348873(-)$1	246	41	57	11.7047
ACUGGUAACACCCAUU	chr3:184046346-184046586(+)$1	240	144	160	10.6069
AAAGCUUUGAUGUUUC	chr2:47389322-47389598(-)$1	276	35	51	9.9355
UAGUUAAUAGAAACUG	chr7:134625757-134626050(+)$1	293	246	262	10.8284
GUACAAAGUCAUGUAC	chr3:58154085-58154348(+)$1	263	193	209	10.8284
AUCCUCCCUGCAGGCA	chr2:242174805-242175096(-)$1	291	74	90	10.9100
UCUAAGUUGUAUUACU	chr14:56128150-56128431(+)$1	281	30	46	11.0139
UUGUGUAUCAUCAUAC	chr8:48715922-48716140(-)$1	218	52	68	9.8582
AGGGAUAUACUUCCCA	chr14:56094532-56094784(+)$1	252	235	251	9.9355
GCAGUGUUAUAACUCA	chr2:54150085-54150302(-)$1	217	90	106	10.7380
UCAAGCAGAAACUUGA	chr9:131370157-131370388(+)$1	231	73	89	9.6677
UGGUUGUGUGAAACUU	chr15:62165344-62165653(-)$1	309	267	283	11.2853
GAUCCAGAUUGGGACU	chr1:19478179-19478445(-)$1	266	154	170	9.9731
GGUAAGGACCAUUGCC	chr2:230659876-230660146(-)$1	270	251	267	10.3222
GCAGUAAGCCAGCUGC	chr20:49508195-49508437(-)$1	242	209	225	10.8284
UUAUUCAUAGAAAUAA	chr20:31020986-31021244(+)$1	258	33	49	10.8284
CAGAUGUGAGUGUCCG	chr17:42290086-42290398(-)$1	312	207	223	10.5890
GUCAAUAAGUUUUGAU	chr13:77785231-77785469(-)$1	238	192	208	10.8284
AAGUCUUAUUUGACUU	chr6:4041007-4041262(+)$1	255	198	214	10.8284
AGUGCCUAUAUGUAUU	chr1:39844062-39844293(+)$1	231	6	22	9.3416
GUUUAUAUCCUUGAAA	chr1:39763265-39763506(+)$1	241	217	233	11.5808
AGCUGCUGCACCAGCU	chr3:184045517-184045759(+)$1	242	215	231	10.4291
AGUCUCCAGCUAGAUA	chr5:14387751-14388057(+)$1	306	95	111	9.9355
AGAAAUUGGGUUUUCC	chr14:31604100-31604333(-)$1	233	167	183	11.3966
AAGUCUUCUCUGACUC	chr12:49435774-49435989(-)$1	215	182	198	10.7659
GAGAGCCAGCUUUCUG	chr1:39909054-39909302(+)$1	248	117	133	11.7047
AGGCCGCCAUGGGCUG	chr2:54880645-54880858(+)$1	213	54	70	11.5910
CUAGAACGCCAUCUAG	chr16:2814916-2815184(+)$1	268	21	37	10.8284
GUUAGCCAUUUCUGAG	chr17:65899840-65900129(+)$1	289	224	240	11.7047
CUAGCAAUGAGGUUAA	chr2:61575426-61575715(-)$1	289	191	207	11.5910
AGGAGAAAAAGCUUCA	chr6:64404419-64404755(+)$1	336	212	228	10.8086
UGGCCACUGGGGGCCU	chr8:144946870-144947105(-)$1	235	147	163	11.6769
GCUGCAGAACAGCAGC	chr17:4925823-4926106(+)$1	283	96	112	10.8284
aaagcgagggagcauu	chr7:134617985-134618254(+)$1	269	128	144	9.2748
UUCAGGAGAUACUGGA	chr7:98574519-98574754(+)$1	235	37	53	10.8284
AUGGAUUAGAUUCUAA	chr6:64394075-64394334(+)$1	259	242	258	9.9355
UGUUAGGUACAUACAC	chr14:56079102-56079392(+)$1	290	252	268	9.3845
CUGCAGUGCAAUGCAG	chr11:9225695-9225965(-)$1	270	247	263	9.6677
GAUUUAUCUAAAGAGA	chr3:121410229-121410488(-)$1	259	87	103	10.7550
AUGACCCUAAAGUUAG	chr10:126673385-126673740(+)$1	355	219	235	10.6218
UUUUUUGUUUUAAAAA	chr2:109370186-109370435(+)$1	249	45	61	9.6677
AUUUAUUUCUUUGAAU	chr1:39903519-39903779(+)$1	260	242	258	9.6677
AAAAUGACUUUGUUUU	chr2:54882191-54882424(+)$1	233	199	215	10.2016
AGUGGCCAUGCCCACC	chr2:242194846-242195096(-)$1	250	31	47	10.6448
GCAGGAAAUACCCGUG	chr14:95569995-95570238(-)$1	243	123	139	9.2562
ccacccccGCUGGUGG	chr19:50104765-50105081(+)$1	316	89	105	9.6677
AAGCCAAAGAAGGCGG	chr6:26157053-26157326(+)$1	273	192	208	10.9997
AAGCUGCCCAAAGCUG	chr11:62297632-62297885(-)$1	253	209	225	11.7333
GCCCUGAUACGAGGGA	chr2:27606326-27606568(-)$1	242	134	150	11.5910
AAACAGAACCAUGUGC	chr9:33295162-33295429(+)$1	267	223	239	10.9997
UAAACAAAUGAGUUUA	chr12:104332048-104332273(+)$1	225	29	45	10.3222
GCAAACAGCCCUUUCU	chr12:1372099-1372409(+)$1	310	18	34	10.7380

#DB
(((((......)))))	chr8:48701618-48701849(-)$1	1	174	190	9.6677
(((((......)))))	chr13:33344232-33344545(+)$1	1	280	296	10.3222
..(((......)))..	chr10:120803465-120803704(-)$1	1	146	162	10.7550
(((.(......).)))	chr3:123418933-123419254(-)$1	1	169	185	10.2889
(((((......)))))	chr1:93307221-93307431(+)$1	1	173	189	10.8284
(((((......)))))	chr12:133358893-133359181(-)$1	1	165	181	10.8284
(((((......)))).	chr5:145850104-145850413(+)$1	1	162	178	9.6954
(((((......)))))	chr8:48767818-48768033(-)$1	1	148	164	9.6677
.((((......)))).	chr8:124348627-124348873(-)$1	1	41	57	11.7047
(.(((......)))))	chr3:184046346-184046586(+)$1	1	144	160	10.6069
.((((......)))).	chr2:47389322-47389598(-)$1	1	35	51	9.9355
(((((......)))))	chr7:134625757-134626050(+)$1	1	246	262	10.8284
(((((......)))))	chr3:58154085-58154348(+)$1	1	193	209	10.8284
(.(((......)))..	chr2:242174805-242175096(-)$1	1	74	90	10.9100
..(((......))).)	chr14:56128150-56128431(+)$1	1	30	46	11.0139
.((((......)))))	chr8:48715922-48716140(-)$1	1	52	68	9.8582
.((((......)))).	chr14:56094532-56094784(+)$1	1	235	251	9.9355
(.(((......)))))	chr2:54150085-54150302(-)$1	1	90	106	10.7380
(((((......)))))	chr9:131370157-131370388(+)$1	1	73	89	9.6677
.((((......)))))	chr15:62165344-62165653(-)$1	1	267	283	11.2853
(((((......))).)	chr1:19478179-19478445(-)$1	1	154	170	9.9731
(((((......)))))	chr2:230659876-230660146(-)$1	1	251	267	10.3222
(((((......)))))	chr20:49508195-49508437(-)$1	1	209	225	10.8284
(((((......)))))	chr20:31020986-31021244(+)$1	1	33	49	10.8284
(.(((......))).)	chr17:42290086-42290398(-)$1	1	207	223	10.5890
(((((......)))))	chr13:77785231-77785469(-)$1	1	192	208	10.8284
(((((......)))))	chr6:4041007-4041262(+)$1	1	198	214	10.8284
.((((......))))(	chr1:39844062-39844293(+)$1	1	6	22	9.3416
.((((......)))))	chr1:39763265-39763506(+)$1	1	217	233	11.5808
(((((......)))))	chr3:184045517-184045759(+)$1	1	215	231	10.4291
.((((......)))).	chr5:14387751-14388057(+)$1	1	95	111	9.9355
.((((......)))))	chr14:31604100-31604333(-)$1	1	167	183	11.3966
)((((......)))).	chr12:49435774-49435989(-)$1	1	182	198	10.7659
.((((......)))).	chr1:39909054-39909302(+)$1	1	117	133	11.7047
.((((......)))).	chr2:54880645-54880858(+)$1	1	54	70	11.5910
(((((......)))))	chr16:2814916-2815184(+)$1	1	21	37	10.8284
.((((......)))).	chr17:65899840-65900129(+)$1	1	224	240	11.7047
.((((......)))).	chr2:61575426-61575715(-)$1	1	191	207	11.5910
.((((......)))).	chr6:64404419-64404755(+)$1	1	212	228	10.8086
.((((......)))).	chr8:144946870-144947105(-)$1	1	147	163	11.6769
(((((......)))))	chr17:4925823-4926106(+)$1	1	96	112	10.8284
((.((......)).))	chr7:134617985-134618254(+)$1	1	128	144	9.2748
(((((......)))))	chr7:98574519-98574754(+)$1	1	37	53	10.8284
.((((......)))).	chr6:64394075-64394334(+)$1	1	242	258	9.9355
(((((......)).))	chr14:56079102-56079392(+)$1	1	252	268	9.3845
(((((......)))))	chr11:9225695-9225965(-)$1	1	247	263	9.6677
..(((......)))..	chr3:121410229-121410488(-)$1	1	87	103	10.7550
(((((......))))(	chr10:126673385-126673740(+)$1	1	219	235	10.6218
(((((......)))))	chr2:109370186-109370435(+)$1	1	45	61	9.6677
(((((......)))))	chr1:39903519-39903779(+)$1	1	242	258	9.6677
(((((......)))))	chr2:54882191-54882424(+)$1	1	199	215	10.2016
(((((......))).)	chr2:242194846-242195096(-)$1	1	31	47	10.6448
(((((......)).))	chr14:95569995-95570238(-)$1	1	123	139	9.2562
(((((......)))))	chr19:50104765-50105081(+)$1	1	89	105	9.6677
..(((......)))))	chr6:26157053-26157326(+)$1	1	192	208	10.9997
.((((......)))).	chr11:62297632-62297885(-)$1	1	209	225	11.7333
.((((......)))).	chr2:27606326-27606568(-)$1	1	134	150	11.5910
..(((......)))))	chr9:33295162-33295429(+)$1	1	223	239	10.9997
(((((......)))))	chr12:104332048-104332273(+)$1	1	29	45	10.3222
(.(((......)))))	chr12:1372099-1372409(+)$1	1	18	34	10.7380

#PSSM
e : 0.21	! : 0.15	f : 0.13	: : 0.09	[ : 0.08	d : 0.08	g : 0.05	= : 0.05	" : 0.03	C : 0.01	b : 0.01	# : 0.01	G : 0.01	i : 0.01	c : 0.01	
d : 0.38	e : 0.19	f : 0.11	! : 0.08	[ : 0.08	g : 0.05	= : 0.03	b : 0.01	i : 0.01	c : 0.01	
d : 0.35	c : 0.21	e : 0.19	f : 0.11	g : 0.05	= : 0.03	[ : 0.01	i : 0.01	
d : 0.35	c : 0.19	e : 0.18	f : 0.11	g : 0.05	b : 0.05	[ : 0.01	= : 0.01	i : 0.01	
d : 0.35	c : 0.19	e : 0.18	f : 0.11	g : 0.05	b : 0.05	a : 0.01	= : 0.01	i : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.35	c : 0.19	e : 0.18	f : 0.11	g : 0.05	b : 0.05	a : 0.01	= : 0.01	i : 0.01	
d : 0.35	c : 0.19	e : 0.18	f : 0.11	g : 0.05	b : 0.05	] : 0.01	= : 0.01	i : 0.01	
d : 0.35	c : 0.19	e : 0.19	f : 0.11	g : 0.05	] : 0.05	= : 0.01	i : 0.01	
d : 0.39	e : 0.19	f : 0.13	] : 0.06	g : 0.05	c : 0.05	2 : 0.03	= : 0.03	3 : 0.01	i : 0.01	
e : 0.19	f : 0.13	: : 0.09	2 : 0.08	d : 0.08	] : 0.06	c : 0.06	g : 0.05	3 : 0.03	b : 0.03	= : 0.03	a : 0.01	B : 0.01	h : 0.01	J : 0.01	5 : 0.01	G : 0.01	i : 0.01	

#score	633.707503086337
#seq	60
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_CDS_m3_run1.txt

#BEAR
hheeeeennnnneeeee:	chr19:3576488-3576724(+)$1	236	193	211	9.5496
!bb[cccnnnnnccc]bb	chr3:194181418-194181659(-)$1	241	86	104	10.8893
ccc!!bbnnnnnbb333c	chr5:137500631-137500897(-)$1	266	120	138	10.9606
cffffffnnnnnffffff	chr19:1621952-1622233(-)$1	281	151	169	10.4051
####cccnnnnnccc333	chr10:120809223-120809504(-)$1	281	123	141	12.5328
ddd[cccnnnnnccc333	chr3:49751250-49751488(+)$1	238	100	118	12.1249
cceeeeennnnneeeee]	chr2:97530909-97531156(-)$1	247	83	101	10.9881
iffffffnnnnnffffff	chr8:103372725-103372979(-)$1	254	193	211	10.3853
:ffffffnnnnnffffff	chrX:53227695-53227952(-)$1	257	214	232	9.5019
ccc[bbannnnna]bb]c	chr12:31241874-31242125(+)$1	251	65	83	10.2401
bb!!cccnnnnnccc333	chr17:27445292-27445515(-)$1	223	86	104	12.2216
c[eeeeennnnneeeee]	chr22:42294563-42294774(+)$1	211	130	148	11.1337
!ccccccnnnnnccc]cc	chr9:4834082-4834347(+)$1	265	40	58	11.6465
bb[ddddnnnnndddd]b	chr1:1248377-1248605(-)$1	228	209	227	9.8360
####cccnnnnnccc444	chr9:134025902-134026128(+)$1	226	202	220	12.1240
gggggggnnnnngggggg	chr1:19528111-19528335(-)$1	224	169	187	11.2919
cc[ddddnnnnnddddcc	chr16:89858239-89858473(-)$1	234	103	121	10.3362
!!eeeeennnnneeeee2	chr16:2225950-2226193(+)$1	243	27	45	11.1023
:ffffffnnnnnffffff	chr3:197574178-197574430(+)$1	252	62	80	9.5019
eeee[bbnnnnnbbeeee	chr6:31725834-31726090(+)$1	256	132	150	10.0342
:ffffffnnnnnffffff	chr16:89949679-89949921(+)$1	242	104	122	9.5019
####cccnnnnnccc22e	chr21:34133269-34133486(-)$1	217	42	60	11.7417
ddd:cccnnnnnccciii	chrX:70618418-70618685(+)$1	267	190	208	10.2482
b"""cccnnnnnccc333	chr19:19135401-19135704(-)$1	303	126	144	12.4134
a[eeeeennnnneeeeea	chr3:69082701-69082956(-)$1	255	174	192	10.9784
=======nnnnn======	chr16:28840651-28840890(+)$1	239	12	30	11.5557
ddd[cccnnnnnccc]dd	chr12:56744091-56744315(-)$1	224	167	185	11.2111
d!!ddddnnnnndddd22	chr22:40796668-40796917(+)$1	249	218	236	10.4788
a[bb[bbnnnnnbbbb]a	chr3:9979220-9979457(+)$1	237	55	73	9.4834
fff[cccnnnnncccfff	chr1:1249133-1249417(-)$1	284	88	106	11.4320
g[eeeeennnnneeeee]	chr1:247065824-247066080(-)$1	256	27	45	11.1127
cc[ddddnnnnndddd]c	chr3:172013112-172013385(+)$1	273	184	202	10.5405
ccc[cccnnnnnccc22c	chr5:141026956-141027193(-)$1	237	171	189	11.8327
ffff[bbnnnnnbbffff	chr17:55693311-55693546(+)$1	235	162	180	9.8951
ddd[cccnnnnncccddd	chr11:9182215-9182483(-)$1	268	183	201	10.9809
cc!!cccnnnnnccc444	chr17:57760009-57760252(+)$1	243	137	155	12.2589
ddd!!bbnnnnnbb]ddd	chr8:21929781-21930059(+)$1	278	66	84	9.6484
gggggggnnnnngggggg	chr9:134353033-134353271(+)$1	238	20	38	11.2919
gggggggnnnnngggggg	chr1:11210089-11210333(-)$1	244	142	160	11.2919
!!ccc[annnnna]ccc2	chr22:39135734-39136041(-)$1	307	113	131	11.1226
ee!!cccnnnnnccc]ee	chr17:61885002-61885262(+)$1	260	197	215	11.7063
ffffcccnnnnnccc22f	chr19:19768043-19768259(-)$1	216	159	177	11.2230
###ddddnnnnndddd22	chr16:720355-720560(+)$1	205	86	104	10.4512
f[eeeeennnnneeeee3	chr17:35614524-35614758(-)$1	234	180	198	11.0914
ddeeeeennnnneeeeeB	chr16:15095531-15095745(+)$1	214	177	195	9.6534
####cccnnnnnccc333	chr1:150525274-150525533(+)$1	259	104	122	12.5328
c####bbnnnnnbb4444	chr16:28137005-28137270(-)$1	265	80	98	10.6881
gggggggnnnnngggggg	chr17:36873009-36873266(+)$1	257	144	162	11.2919
b:eeeeennnnneeeeeh	chr6:146242289-146242625(-)$1	336	175	193	9.4357
ggggg[annnnna]gggg	chr12:53564129-53564403(-)$1	274	133	151	11.1236
ddeeeeennnnneeeee2	chr22:22035528-22035780(+)$1	252	20	38	10.6148
ggg[cccnnnnncccggg	chr5:176919214-176919514(-)$1	300	267	285	11.9886
gggggggnnnnngggggg	chr19:35502283-35502553(+)$1	270	176	194	11.2919
=======nnnnn======	chr6:31657751-31657977(-)$1	226	173	191	11.5557
gggggggnnnnngggggg	chr5:72182792-72183085(+)$1	293	182	200	11.2919
iiiicccnnnnnccc:ff	chr17:76120710-76120963(-)$1	253	179	197	10.6653
eeeee[annnnnaeeeee	chr14:103804976-103805245(+)$1	269	3	21	10.5601

#otherMatches

#Seq PSSM
GUGGGCCAGGAGGGCCCC	chr19:3576488-3576724(+)$1	236	193	211	9.5496
UGUGUCCAUGCAGGAGAU	chr3:194181418-194181659(-)$1	241	86	104	10.8893
CAGUCCCUGCCUGGCCCC	chr5:137500631-137500897(-)$1	266	120	138	10.9606
UUUGGUGGCCUGCACCAG	chr19:1621952-1622233(-)$1	281	151	169	10.4051
GAAAUUGAAGAACGAGAA	chr10:120809223-120809504(-)$1	281	123	141	12.5328
CCAUGGUGAGGAACCUCC	chr3:49751250-49751488(+)$1	238	100	118	12.1249
CCUCUGUCUCCCAUAGAU	chr2:97530909-97531156(-)$1	247	83	101	10.9881
GUAUUUAGCUCUUAGGUA	chr8:103372725-103372979(-)$1	254	193	211	10.3853
ACUGCCUGAGUGAGGCAG	chrX:53227695-53227952(-)$1	257	214	232	9.5019
GGUUCUCUCUUUGAAGCG	chr12:31241874-31242125(+)$1	251	65	83	10.2401
AGAACAAUGUGUUUGGGA	chr17:27445292-27445515(-)$1	223	86	104	12.2216
GUGGCCAUCAGCUGGCUC	chr22:42294563-42294774(+)$1	211	130	148	11.1337
UUCUCACUCUCUGUGUAG	chr9:4834082-4834347(+)$1	265	40	58	11.6465
CUGGGCUGGCAGGGCCGA	chr1:1248377-1248605(-)$1	228	209	227	9.8360
UCAGAUGACUUGCAUACC	chr9:134025902-134026128(+)$1	226	202	220	12.1240
GGGGGAUUGUUUAUCCUC	chr1:19528111-19528335(-)$1	224	169	187	11.2919
UUGUCUGCUUUCCAGAAG	chr16:89858239-89858473(-)$1	234	103	121	10.3362
AAGGCCAGACUGUGGCCC	chr16:2225950-2226193(+)$1	243	27	45	11.1023
CAAAGAGUUUUUUUCUUU	chr3:197574178-197574430(+)$1	252	62	80	9.5019
GGGAUGCCUGCCGCUCCC	chr6:31725834-31726090(+)$1	256	132	150	10.0342
ACCCUGUGGUGAACGGGG	chr16:89949679-89949921(+)$1	242	104	122	9.5019
GUAACUGGAGAACAGGAU	chr21:34133269-34133486(-)$1	217	42	60	11.7417
UACAGCUAACGGAGCAAA	chrX:70618418-70618685(+)$1	267	190	208	10.2482
UACAUAGACCACCUGAAG	chr19:19135401-19135704(-)$1	303	126	144	12.4134
GACAAAUAGAAAAUUUGC	chr3:69082701-69082956(-)$1	255	174	192	10.9784
AAGUGACUUGUCGUUGCU	chr16:28840651-28840890(+)$1	239	12	30	11.5557
ugcagaaccacauucggc	chr12:56744091-56744315(-)$1	224	167	185	11.2111
GGCUUGUUUUCCAUAAAA	chr22:40796668-40796917(+)$1	249	218	236	10.4788
UGUGUGCAGCAAGUCAGA	chr3:9979220-9979457(+)$1	237	55	73	9.4834
CUGUGCUGACUGGGCCGG	chr1:1249133-1249417(-)$1	284	88	106	11.4320
AUUUGGAGAAUAUUUAAU	chr1:247065824-247066080(-)$1	256	27	45	11.1127
AUUUACAGGUUGUGUAUG	chr3:172013112-172013385(+)$1	273	184	202	10.5405
GGAAGCCGCAGAGGUCAU	chr5:141026956-141027193(-)$1	237	171	189	11.8327
Auggacugggagggcuau	chr17:55693311-55693546(+)$1	235	162	180	9.8951
UCCUGGAAAGGAUCUGGA	chr11:9182215-9182483(-)$1	268	183	201	10.9809
GGAAAGAGGUAAUCUAAA	chr17:57760009-57760252(+)$1	243	137	155	12.2589
AGGAAGCGGAAGGCGUCU	chr8:21929781-21930059(+)$1	278	66	84	9.6484
GUGUGCAGGCUGUGUGCA	chr9:134353033-134353271(+)$1	238	20	38	11.2919
GGGGUUUAGGUAAAGCUU	chr1:11210089-11210333(-)$1	244	142	160	11.2919
CUGGAUCAGUCAGUUCCU	chr22:39135734-39136041(-)$1	307	113	131	11.1226
GGAACCAGGUGAUGGACC	chr17:61885002-61885262(+)$1	260	197	215	11.7063
GCUUUCCUAACCGGAUCA	chr19:19768043-19768259(-)$1	216	159	177	11.2230
UCCCACUUUCCCAGUGUU	chr16:720355-720560(+)$1	205	86	104	10.4512
UAAUCUUAAGUGAAGGUG	chr17:35614524-35614758(-)$1	234	180	198	11.0914
CCCAGGUAAUGAACCUGG	chr16:15095531-15095745(+)$1	214	177	195	9.6534
GUCCGGACACUCUCUUCA	chr1:150525274-150525533(+)$1	259	104	122	12.5328
GUCUGGCGUGUUGUGUUC	chr16:28137005-28137270(-)$1	265	80	98	10.6881
UGGGAGGUCUGUCCUCCC	chr17:36873009-36873266(+)$1	257	144	162	11.2919
CACCCGGGGUCUCUGGGC	chr6:146242289-146242625(-)$1	336	175	193	9.4357
AGAAGGGAGCUGCGUUUC	chr12:53564129-53564403(-)$1	274	133	151	11.1236
CAGAGGUGACUGGCCUCC	chr22:22035528-22035780(+)$1	252	20	38	10.6148
GGGGCUGCUGCACGGUCC	chr5:176919214-176919514(-)$1	300	267	285	11.9886
UGGGCCUGGGUGAGGCCC	chr19:35502283-35502553(+)$1	270	176	194	11.2919
CUCUGGUCAGCCAUUGGA	chr6:31657751-31657977(-)$1	226	173	191	11.5557
UGAAAGAAUUACUUUUUC	chr5:72182792-72183085(+)$1	293	182	200	11.2919
GGGGGCCAGUUCGGCUCC	chr17:76120710-76120963(-)$1	253	179	197	10.6653
GAUGGACUUGAUGCCAUU	chr14:103804976-103805245(+)$1	269	3	21	10.5601

#DB
))(((((.....))))).	chr19:3576488-3576724(+)$1	1	193	211	9.5496
.((.(((.....))).))	chr3:194181418-194181659(-)$1	1	86	104	10.8893
(((..((.....))...)	chr5:137500631-137500897(-)$1	1	120	138	10.9606
(((((((.....))))))	chr19:1621952-1622233(-)$1	1	151	169	10.4051
....(((.....)))...	chr10:120809223-120809504(-)$1	1	123	141	12.5328
(((.(((.....)))...	chr3:49751250-49751488(+)$1	1	100	118	12.1249
(((((((.....))))).	chr2:97530909-97531156(-)$1	1	83	101	10.9881
(((((((.....))))))	chr8:103372725-103372979(-)$1	1	193	211	10.3853
.((((((.....))))))	chrX:53227695-53227952(-)$1	1	214	232	9.5019
(((.(((.....).)).)	chr12:31241874-31242125(+)$1	1	65	83	10.2401
((..(((.....)))...	chr17:27445292-27445515(-)$1	1	86	104	12.2216
(.(((((.....))))).	chr22:42294563-42294774(+)$1	1	130	148	11.1337
.((((((.....))).))	chr9:4834082-4834347(+)$1	1	40	58	11.6465
((.((((.....)))).)	chr1:1248377-1248605(-)$1	1	209	227	9.8360
....(((.....)))...	chr9:134025902-134026128(+)$1	1	202	220	12.1240
(((((((.....))))))	chr1:19528111-19528335(-)$1	1	169	187	11.2919
((.((((.....))))))	chr16:89858239-89858473(-)$1	1	103	121	10.3362
..(((((.....))))).	chr16:2225950-2226193(+)$1	1	27	45	11.1023
.((((((.....))))))	chr3:197574178-197574430(+)$1	1	62	80	9.5019
((((.((.....))))))	chr6:31725834-31726090(+)$1	1	132	150	10.0342
.((((((.....))))))	chr16:89949679-89949921(+)$1	1	104	122	9.5019
....(((.....)))..)	chr21:34133269-34133486(-)$1	1	42	60	11.7417
))).(((.....)))(((	chrX:70618418-70618685(+)$1	1	190	208	10.2482
(...(((.....)))...	chr19:19135401-19135704(-)$1	1	126	144	12.4134
(.(((((.....))))))	chr3:69082701-69082956(-)$1	1	174	192	10.9784
(((((((.....))))))	chr16:28840651-28840890(+)$1	1	12	30	11.5557
(((.(((.....))).))	chr12:56744091-56744315(-)$1	1	167	185	11.2111
(..((((.....))))..	chr22:40796668-40796917(+)$1	1	218	236	10.4788
(.((.((.....)))).)	chr3:9979220-9979457(+)$1	1	55	73	9.4834
(((.(((.....))))))	chr1:1249133-1249417(-)$1	1	88	106	11.4320
(.(((((.....))))).	chr1:247065824-247066080(-)$1	1	27	45	11.1127
((.((((.....)))).)	chr3:172013112-172013385(+)$1	1	184	202	10.5405
(((.(((.....)))..)	chr5:141026956-141027193(-)$1	1	171	189	11.8327
((((.((.....))))))	chr17:55693311-55693546(+)$1	1	162	180	9.8951
(((.(((.....))))))	chr11:9182215-9182483(-)$1	1	183	201	10.9809
((..(((.....)))...	chr17:57760009-57760252(+)$1	1	137	155	12.2589
(((..((.....)).)))	chr8:21929781-21930059(+)$1	1	66	84	9.6484
(((((((.....))))))	chr9:134353033-134353271(+)$1	1	20	38	11.2919
(((((((.....))))))	chr1:11210089-11210333(-)$1	1	142	160	11.2919
..(((.(.....).))).	chr22:39135734-39136041(-)$1	1	113	131	11.1226
((..(((.....))).))	chr17:61885002-61885262(+)$1	1	197	215	11.7063
(((((((.....)))..)	chr19:19768043-19768259(-)$1	1	159	177	11.2230
...((((.....))))..	chr16:720355-720560(+)$1	1	86	104	10.4512
(.(((((.....))))).	chr17:35614524-35614758(-)$1	1	180	198	11.0914
))(((((.....))))))	chr16:15095531-15095745(+)$1	1	177	195	9.6534
....(((.....)))...	chr1:150525274-150525533(+)$1	1	104	122	12.5328
(....((.....))....	chr16:28137005-28137270(-)$1	1	80	98	10.6881
(((((((.....))))))	chr17:36873009-36873266(+)$1	1	144	162	11.2919
).(((((.....)))))(	chr6:146242289-146242625(-)$1	1	175	193	9.4357
(((((.(.....).))))	chr12:53564129-53564403(-)$1	1	133	151	11.1236
(((((((.....))))).	chr22:22035528-22035780(+)$1	1	20	38	10.6148
(((.(((.....))))))	chr5:176919214-176919514(-)$1	1	267	285	11.9886
(((((((.....))))))	chr19:35502283-35502553(+)$1	1	176	194	11.2919
(((((((.....))))))	chr6:31657751-31657977(-)$1	1	173	191	11.5557
(((((((.....))))))	chr5:72182792-72183085(+)$1	1	182	200	11.2919
))))(((.....))).((	chr17:76120710-76120963(-)$1	1	179	197	10.6653
(((((.(.....))))))	chr14:103804976-103805245(+)$1	1	3	21	10.5601

#PSSM
c : 0.17	g : 0.15	d : 0.14	# : 0.08	! : 0.07	b : 0.07	f : 0.07	: : 0.05	e : 0.05	i : 0.03	a : 0.03	= : 0.03	h : 0.01	
c : 0.14	f : 0.14	g : 0.14	d : 0.12	# : 0.10	[ : 0.08	b : 0.05	! : 0.05	e : 0.05	= : 0.03	h : 0.01	" : 0.01	: : 0.01	i : 0.01	
e : 0.21	f : 0.14	g : 0.14	# : 0.10	c : 0.08	d : 0.08	! : 0.07	[ : 0.05	b : 0.03	= : 0.03	" : 0.01	i : 0.01	
e : 0.21	[ : 0.14	f : 0.12	g : 0.12	! : 0.08	# : 0.08	d : 0.08	c : 0.03	= : 0.03	: : 0.01	" : 0.01	b : 0.01	i : 0.01	
c : 0.35	e : 0.19	g : 0.12	f : 0.08	d : 0.08	[ : 0.05	! : 0.03	= : 0.03	b : 0.01	# : 0.01	
c : 0.33	e : 0.17	b : 0.12	g : 0.10	f : 0.08	d : 0.08	[ : 0.05	= : 0.03	
c : 0.33	e : 0.17	b : 0.10	g : 0.10	f : 0.08	d : 0.08	a : 0.07	= : 0.03	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
c : 0.33	e : 0.17	b : 0.10	g : 0.10	f : 0.08	d : 0.08	a : 0.07	= : 0.03	
c : 0.33	e : 0.19	b : 0.10	g : 0.10	f : 0.08	d : 0.08	] : 0.05	= : 0.03	
c : 0.35	e : 0.21	g : 0.12	f : 0.10	d : 0.08	b : 0.03	= : 0.03	3 : 0.01	] : 0.01	4 : 0.01	
e : 0.21	g : 0.14	f : 0.12	d : 0.12	3 : 0.10	] : 0.07	4 : 0.05	2 : 0.05	b : 0.03	= : 0.03	i : 0.01	c : 0.01	: : 0.01	
e : 0.22	f : 0.14	g : 0.14	3 : 0.10	2 : 0.08	] : 0.07	c : 0.05	4 : 0.05	d : 0.05	= : 0.03	b : 0.01	i : 0.01	
f : 0.15	g : 0.14	c : 0.10	3 : 0.10	2 : 0.08	e : 0.07	] : 0.05	4 : 0.05	d : 0.05	b : 0.03	a : 0.03	= : 0.03	: : 0.01	i : 0.01	B : 0.01	h : 0.01	

#score	622.9948182754338
#seq	57
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_UTR_m1_run2.txt

#BEAR
!!ffffffuuuuuuuuuuuuffffff2	chr9:127998702-127998966(-)$1	264	141	168	24.3512
dd!!cccxxxxxxxxxxxxxxxccc22	chr5:70805975-70806236(+)$1	261	209	236	18.8074
====:cccvvvvvvvvvvvvvcccccc	chr2:232327842-232328099(-)$1	257	70	97	22.9732
"""ddddvvvvvvvvvvvvvdddd333	chr6:56425080-56425318(-)$1	238	165	192	23.7362
hhhhcccwwwwwwwwwwwwwwccc]hh	chr11:62284067-62284280(-)$1	213	125	152	22.6243
ccc!!cccuuuuuuuuuuuuccc22cc	chr18:2795911-2796166(+)$1	255	86	113	24.0249
dd[eeeeeuuuuuuuuuuuueeeeedd	chr6:56371458-56371685(-)$1	227	174	201	23.2448
:ffffffwwwwwwwwwwwwwwffffff	chr6:56391158-56391418(-)$1	260	165	192	22.5117
gggggggvvvvvvvvvvvvvggggggg	chr22:29696008-29696275(+)$1	267	142	169	24.4883
c:ffffffuuuuuuuuuuuuffffff:	chr6:56323893-56324162(-)$1	269	82	109	22.3477
ddeeeeeattttttttttta]eeeee:	chr3:184042648-184042907(+)$1	259	153	180	22.4520
=======attttttttttta]======	chr14:31588918-31589163(-)$1	245	48	75	24.2529
[ffffffwwwwwwwwwwwwwwffffff	chr5:150501607-150501844(-)$1	237	190	217	23.3529
iiiicccwwwwwwwwwwwwwwccc]ii	chr11:62284044-62284267(-)$1	223	112	139	23.9362
++ddddvvvvvvvvvvvvvdddd333b	chr3:184052904-184053189(+)$1	285	233	260	20.5421
$$$bbwwwwwwwwwwwwwwbb333===	chr3:184044218-184044423(+)$1	205	67	94	20.0716
!!ffffffuuuuuuuuuuuuffffff2	chr9:127998766-127999063(-)$1	297	238	265	24.3512
a!!ddddwwwwwwwwwwwwwwdddd]a	chr2:54197746-54198039(-)$1	293	16	43	23.0353
eeeeyyyyyyyyyyyyyyyyeeeee33	chr2:182780666-182780913(+)$1	247	74	101	20.8967
cceeeeewwwwwwwwwwwwwweeeee]	chr19:47504461-47504703(+)$1	242	146	173	23.3869
:ffffffwwwwwwwwwwwwwwffffff	chr7:151855904-151856224(-)$1	320	1	28	22.5117
bbffffffuuuuuuuuuuuuffffff]	chr9:134350463-134350726(+)$1	263	181	208	23.8689
!ffffffvvvvvvvvvvvvvffffffd	chr16:58576092-58576326(-)$1	234	199	226	24.0495
ccceeeeettttttttttteeeee]cc	chr6:56327748-56327999(-)$1	251	160	187	22.4086
ee!!ddddtttttttttttdddd]eee	chr3:184043276-184043521(+)$1	245	17	44	21.8269
d!!ddddwwwwwwwwwwwwwwdddd]d	chr16:8987794-8988027(-)$1	233	103	130	22.7514
=======attttttttttta]======	chr14:31588963-31589172(-)$1	209	57	84	24.2529
eeeddddvvvvvvvvvvvvvdddd]ee	chr2:54895749-54895974(+)$1	225	61	88	23.0444
eee[cccxxxxxxxxxxxxxxxccc22	chr9:134342849-134343131(+)$1	282	95	122	18.7486
:gggggggtttttttttttggggggg:	chr16:89349563-89349820(-)$1	257	5	32	21.4892
eeffffffuuuuuuuuuuuuffffffE	chr20:36374769-36374998(+)$1	229	161	188	22.8996
========uuuuuuuuuuuu=======	chr7:104741804-104742117(+)$1	313	252	279	24.6706
dddd[cccuuuuuuuuuuuucccdddd	chr2:101622706-101622967(+)$1	261	2	29	23.4534
""fffffftttttttttttffffff==	chr6:56362697-56362952(-)$1	255	55	82	22.9861
!!eeeeewwwwwwwwwwwwwweeeee2	chr3:58139089-58139357(+)$1	268	178	205	23.4515
h[ddddyyyyyyyyyyyyyyyydddd]	chr12:26639117-26639375(-)$1	258	44	71	20.8801
::eeeeeuuuuuuuuuuuueeeeefff	chr6:11191286-11191531(-)$1	245	137	164	21.2692
hhhhhhhwwwwwwwwwwwwwwhhhhhh	chr6:56437700-56437938(-)$1	238	120	147	21.0010
iiiiiiiyyyyyyyyyyyyyyyyiiii	chr8:124338069-124338361(-)$1	292	226	253	21.7353
c####cccuuuuuuuuuuuuccc7777	chr19:10260476-10260745(-)$1	269	37	64	21.7898
bffffffvvvvvvvvvvvvvffffff]	chr6:56401504-56401814(-)$1	310	36	63	24.1114
ccc!!ccctttttttttttccc]ccc]	chr3:123418933-123419254(-)$1	321	100	127	23.4459
hh!!dddduuuuuuuuuuuudddd22h	chr3:121409924-121410209(-)$1	285	152	179	22.5813
bffffffvvvvvvvvvvvvvffffff]	chr6:56401614-56401836(-)$1	222	58	85	24.1114
ccc[cccwwwwwwwwwwwwwwcccccc	chr9:95012070-95012317(-)$1	247	63	90	23.6589
$bb!!cccuuuuuuuuuuuuccc22bb	chr12:56563459-56563761(-)$1	302	169	196	22.9121
ddeeeeeattttttttttta]eeeee:	chr3:184042707-184043002(+)$1	295	94	121	22.4520
========ttttttttttt========	chr14:31590535-31590756(-)$1	221	25	52	23.3588
dd####bbtttttttttttbbddddee	chr18:12329450-12329805(-)$1	355	196	223	21.1501
cceeeeewwwwwwwwwwwwwweeeee]	chr11:130010248-130010466(+)$1	218	188	215	23.3869
ddd[cccvvvvvvvvvvvvvccc]ddd	chr3:184052433-184052725(+)$1	292	146	173	23.6863
hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr3:184045333-184045591(+)$1	258	124	151	20.9552
:ggggggguuuuuuuuuuuuggggggg	chrX:153585810-153586044(-)$1	234	144	171	23.6176
[ffffffwwwwwwwwwwwwwwffffff	chr2:54093185-54093441(-)$1	256	189	216	23.3529
:gggggggtttttttttttggggggg:	chr9:123171408-123171681(-)$1	273	123	150	21.4892
e[ffffffuuuuuuuuuuuuffffff]	chr19:10273242-10273470(-)$1	228	120	147	24.3006
$$$ddddvvvvvvvvvvvvvdddd666	chr2:71653702-71653989(+)$1	287	180	207	21.4801
ggggyyyyyyyyyyyyyyyyggggggg	chrX:53439050-53439304(-)$1	254	46	73	21.3892
:gggggggtttttttttttggggggg:	chr19:5711702-5712021(-)$1	319	70	97	21.4892
ggggg[bbuuuuuuuuuuuubb]gggg	chr16:46711155-46711411(-)$1	256	61	88	23.5590
eeeeebbuuuuuuuuuuuubb]eeeee	chr17:48823798-48824166(+)$1	368	51	78	22.1929
!!ffffffuuuuuuuuuuuuffffff]	chr8:124369818-124370042(-)$1	224	32	59	24.5681
ddd[cccwwwwwwwwwwwwwwcccddd	chr3:123345550-123345853(-)$1	303	74	101	22.9580
========ttttttttttt========	chr14:31590566-31590787(-)$1	221	56	83	23.3588
b[dddd[attttttttttta]ddddbb	chr2:232577060-232577269(+)$1	209	148	175	22.3750

#otherMatches

#Seq PSSM
AACUUUUGUUAGGAAAAAAUUGAAAGA	chr9:127998702-127998966(-)$1	264	141	168	24.3512
UAGAUUUGGAAGAAACUGAAAGAGAAA	chr5:70805975-70806236(+)$1	261	209	236	18.8074
AGGCAGGUAAAAAUCAAGGUGACCCCA	chr2:232327842-232328099(-)$1	257	70	97	22.9732
GUUGGAGGAGAACCCAGAUACUCCUGA	chr6:56425080-56425318(-)$1	238	165	192	23.7362
UGUUCCUAUAUAAACUCCAAAGGGAAA	chr11:62284067-62284280(-)$1	213	125	152	22.6243
AGGAUCUUAACAGUCAAUUAGAGUACC	chr18:2795911-2796166(+)$1	255	86	113	24.0249
CAUGUGGGGAGCCUGAUAAACCCAUUG	chr6:56371458-56371685(-)$1	227	174	201	23.2448
UGGUAGCUGAGGACAAUGAGCGCUACC	chr6:56391158-56391418(-)$1	260	165	192	22.5117
GAUGCAGAGACCCCGCAGAGCUGCAUU	chr22:29696008-29696275(+)$1	267	142	169	24.4883
ACCUUCUUUCCUCAGAUUCCAAGAAGA	chr6:56323893-56324162(-)$1	269	82	109	22.3477
GUGUGGUCAAACUGCUUAAGAACCAUG	chr3:184042648-184042907(+)$1	259	153	180	22.4520
UUUGCAUCUUAUUAUGUUUGUGUGUGA	chr14:31588918-31589163(-)$1	245	48	75	24.2529
GUGAUCCUCAUAAGCCCAGGUGGAUUA	chr5:150501607-150501844(-)$1	237	190	217	23.3529
UGUUCCUAUAUAAACUCCAAAGGGAAA	chr11:62284044-62284267(-)$1	223	112	139	23.9362
UUAAGCUCACUGCCUUUCUGCUUUAUG	chr3:184052904-184053189(+)$1	285	233	260	20.5421
UAUGAUUCUACUCCCCUUUUCUUCUUC	chr3:184044218-184044423(+)$1	205	67	94	20.0716
AACUUUUGUUAGGAAAAAAUUGAAAGA	chr9:127998766-127999063(-)$1	297	238	265	24.3512
CGGCCGCAGGGCGACGAAGACGCGGAG	chr2:54197746-54198039(-)$1	293	16	43	23.0353
GGUCAGUCUUUAGUUAAAUCGACCAUU	chr2:182780666-182780913(+)$1	247	74	101	20.8967
UCCCUGGCAAACAAAGGAACACUAGGA	chr19:47504461-47504703(+)$1	242	146	173	23.3869
CUGCAUGAACUAAAAACCAAAUAUGCA	chr7:151855904-151856224(-)$1	320	1	28	22.5117
CAUGAAGAGAAAUAACUGGAUCUUUAU	chr9:134350463-134350726(+)$1	263	181	208	23.8689
UUGGGGCUCUGUCUUUCCCCGUCCCAU	chr16:58576092-58576326(-)$1	234	199	226	24.0495
UGUAAGGCCCCAGAGUCCAGUCUUAAC	chr6:56327748-56327999(-)$1	251	160	187	22.4086
UCAGGGUCCCAAGACCAUUGACCAGAU	chr3:184043276-184043521(+)$1	245	17	44	21.8269
CCACUUCAACAAAGCCCCAAAGAGGAG	chr16:8987794-8988027(-)$1	233	103	130	22.7514
UUUGCAUCUUAUUAUGUUUGUGUGUGA	chr14:31588963-31589172(-)$1	209	57	84	24.2529
UGGUUGauuuuuuuuuuuuuuuaauuu	chr2:54895749-54895974(+)$1	225	61	88	23.0444
UCUAGGCUCCCCAGAAUUCCCUGCCCA	chr9:134342849-134343131(+)$1	282	95	122	18.7486
AUGUCAGAAGGACAAAGAAUUUGAUAA	chr16:89349563-89349820(-)$1	257	5	32	21.4892
AUGCCAGACCUGUACCACCUUCUGGUG	chr20:36374769-36374998(+)$1	229	161	188	22.8996
UUUAUUUUCUUAAACACUUUAAAAUAA	chr7:104741804-104742117(+)$1	313	252	279	24.6706
GGUUGUGGAAAAUAGAAUGCCCAGACC	chr2:101622706-101622967(+)$1	261	2	29	23.4534
AACAUGUUACAAACUAGCAAACAUGGU	chr6:56362697-56362952(-)$1	255	55	82	22.9861
CAGCCCCUUCCAGUUCACCGUGGGGCC	chr3:58139089-58139357(+)$1	268	178	205	23.4515
AUUGGUUCAGAAAUAUAAAAGUACUGC	chr12:26639117-26639375(-)$1	258	44	71	20.8801
UAGGGAAAAAGACUAUGACUUCCCCCC	chr6:11191286-11191531(-)$1	245	137	164	21.2692
CAUGAAUGAAAAAGUGAAGAAAUUUAU	chr6:56437700-56437938(-)$1	238	120	147	21.0010
AAAGUAUGUAAAUUGAAAUCAUAAUGC	chr8:124338069-124338361(-)$1	292	226	253	21.7353
UGCAAGUCAAGGCCAGCAAAGACCCUC	chr19:10260476-10260745(-)$1	269	37	64	21.7898
GGUAAUAUAACUCAUAUAAUUAUUACU	chr6:56401504-56401814(-)$1	310	36	63	24.1114
AGCCUGAUGAGAACCUGAAAUCCGCUA	chr3:123418933-123419254(-)$1	321	100	127	23.4459
GGAGAUGGAACAGAAAUUACUCAUGGU	chr3:121409924-121410209(-)$1	285	152	179	22.5813
GGUAAUAUAACUCAUAUAAUUAUUACU	chr6:56401614-56401836(-)$1	222	58	85	24.1114
GAGUGAACUUUCCCCUCCCUUUUCCUC	chr9:95012070-95012317(-)$1	247	63	90	23.6589
AGGAGUCCGAGAAGAGUGAUGGAGACC	chr12:56563459-56563761(-)$1	302	169	196	22.9121
GUGUGGUCAAACUGCUUAAGAACCAUG	chr3:184042707-184043002(+)$1	295	94	121	22.4520
UUGGGAUUGUUUUAUUUUAGAUUCUGA	chr14:31590535-31590756(-)$1	221	25	52	23.3588
GGAAAAGGAGAAAGAGGAGCCCCCGGG	chr18:12329450-12329805(-)$1	355	196	223	21.1501
UGACCUGAUGUCAGAUGCUUCCAGGUG	chr11:130010248-130010466(+)$1	218	188	215	23.3869
AGUUGGGAGAGUAGCAAGGACCCCGCU	chr3:184052433-184052725(+)$1	292	146	173	23.6863
UCAUUGAGGAAUAUCUCCAUCUCAAUG	chr3:184045333-184045591(+)$1	258	124	151	20.9552
ACACCAUCCUCAUCAAGUACGGUGGUG	chrX:153585810-153586044(-)$1	234	144	171	23.6176
CUUGUGUCACCAUGCUAUUAUGCAUAG	chr2:54093185-54093441(-)$1	256	189	216	23.3529
UCUCCAGGAAGACCGUGAGCCUGGAGC	chr9:123171408-123171681(-)$1	273	123	150	21.4892
AUGAAAAGGUAAAGGUCUCACUUUUCU	chr19:10273242-10273470(-)$1	228	120	147	24.3006
AGAACUAAAUAUGGAAGAAAUGGUAAA	chr2:71653702-71653989(+)$1	287	180	207	21.4801
GAACCCUCCCUUCUUCCAUAGUUCUCA	chrX:53439050-53439304(-)$1	254	46	73	21.3892
AGCCCCGCAGGAAGUCAAAGCGGGGCA	chr19:5711702-5712021(-)$1	319	70	97	21.4892
AAACAGAUUUUAACCCUUAUGUGUGUU	chr16:46711155-46711411(-)$1	256	61	88	23.5590
CUUUACUUAUUGUAAUACUGGCUGAAG	chr17:48823798-48824166(+)$1	368	51	78	22.1929
UGUAAUACUAAAAUGUUAAUGUAUUGU	chr8:124369818-124370042(-)$1	224	32	59	24.5681
GGACUGCACGCAGUGCCUUCAGCAUCC	chr3:123345550-123345853(-)$1	303	74	101	22.9580
UUGGGAUUGUUUUAUUUUAGAUUCUGA	chr14:31590566-31590787(-)$1	221	56	83	23.3588
GCAGCUGAAGAUGAUGAGGUGGGUUCU	chr2:232577060-232577269(+)$1	209	148	175	22.3750

#DB
..((((((............)))))).	chr9:127998702-127998966(-)$1	1	141	168	24.3512
((..(((...............)))..	chr5:70805975-70806236(+)$1	1	209	236	18.8074
)))).(((.............)))(((	chr2:232327842-232328099(-)$1	1	70	97	22.9732
...((((.............))))...	chr6:56425080-56425318(-)$1	1	165	192	23.7362
(((((((..............))).))	chr11:62284067-62284280(-)$1	1	125	152	22.6243
(((..(((............)))..))	chr18:2795911-2796166(+)$1	1	86	113	24.0249
((.(((((............)))))))	chr6:56371458-56371685(-)$1	1	174	201	23.2448
.((((((..............))))))	chr6:56391158-56391418(-)$1	1	165	192	22.5117
(((((((.............)))))))	chr22:29696008-29696275(+)$1	1	142	169	24.4883
).((((((............)))))).	chr6:56323893-56324162(-)$1	1	82	109	22.3477
))((((((...........).))))).	chr3:184042648-184042907(+)$1	1	153	180	22.4520
((((((((...........).))))))	chr14:31588918-31589163(-)$1	1	48	75	24.2529
.((((((..............))))))	chr5:150501607-150501844(-)$1	1	190	217	23.3529
(((((((..............))).))	chr11:62284044-62284267(-)$1	1	112	139	23.9362
..((((.............))))...)	chr3:184052904-184053189(+)$1	1	233	260	20.5421
...((..............))...)))	chr3:184044218-184044423(+)$1	1	67	94	20.0716
..((((((............)))))).	chr9:127998766-127999063(-)$1	1	238	265	24.3512
(..((((..............)))).)	chr2:54197746-54198039(-)$1	1	16	43	23.0353
((((................)))))..	chr2:182780666-182780913(+)$1	1	74	101	20.8967
(((((((..............))))).	chr19:47504461-47504703(+)$1	1	146	173	23.3869
.((((((..............))))))	chr7:151855904-151856224(-)$1	1	1	28	22.5117
((((((((............)))))).	chr9:134350463-134350726(+)$1	1	181	208	23.8689
.((((((.............)))))))	chr16:58576092-58576326(-)$1	1	199	226	24.0495
((((((((...........))))).))	chr6:56327748-56327999(-)$1	1	160	187	22.4086
((..((((...........)))).)))	chr3:184043276-184043521(+)$1	1	17	44	21.8269
(..((((..............)))).)	chr16:8987794-8988027(-)$1	1	103	130	22.7514
((((((((...........).))))))	chr14:31588963-31589172(-)$1	1	57	84	24.2529
(((((((.............)))).))	chr2:54895749-54895974(+)$1	1	61	88	23.0444
(((.(((...............)))..	chr9:134342849-134343131(+)$1	1	95	122	18.7486
.(((((((...........))))))).	chr16:89349563-89349820(-)$1	1	5	32	21.4892
))((((((............)))))))	chr20:36374769-36374998(+)$1	1	161	188	22.8996
((((((((............)))))))	chr7:104741804-104742117(+)$1	1	252	279	24.6706
((((.(((............)))))))	chr2:101622706-101622967(+)$1	1	2	29	23.4534
..((((((...........))))))))	chr6:56362697-56362952(-)$1	1	55	82	22.9861
..(((((..............))))).	chr3:58139089-58139357(+)$1	1	178	205	23.4515
(.((((................)))).	chr12:26639117-26639375(-)$1	1	44	71	20.8801
..(((((............)))))(((	chr6:11191286-11191531(-)$1	1	137	164	21.2692
(((((((..............))))))	chr6:56437700-56437938(-)$1	1	120	147	21.0010
(((((((................))))	chr8:124338069-124338361(-)$1	1	226	253	21.7353
(....(((............)))....	chr19:10260476-10260745(-)$1	1	37	64	21.7898
(((((((.............)))))).	chr6:56401504-56401814(-)$1	1	36	63	24.1114
(((..(((...........))).))).	chr3:123418933-123419254(-)$1	1	100	127	23.4459
((..((((............))))..)	chr3:121409924-121410209(-)$1	1	152	179	22.5813
(((((((.............)))))).	chr6:56401614-56401836(-)$1	1	58	85	24.1114
(((.(((..............))))))	chr9:95012070-95012317(-)$1	1	63	90	23.6589
.((..(((............)))..))	chr12:56563459-56563761(-)$1	1	169	196	22.9121
))((((((...........).))))).	chr3:184042707-184043002(+)$1	1	94	121	22.4520
((((((((...........))))))))	chr14:31590535-31590756(-)$1	1	25	52	23.3588
((....((...........))))))((	chr18:12329450-12329805(-)$1	1	196	223	21.1501
(((((((..............))))).	chr11:130010248-130010466(+)$1	1	188	215	23.3869
(((.(((.............))).)))	chr3:184052433-184052725(+)$1	1	146	173	23.6863
((((((((............)))))))	chr3:184045333-184045591(+)$1	1	124	151	20.9552
.(((((((............)))))))	chrX:153585810-153586044(-)$1	1	144	171	23.6176
.((((((..............))))))	chr2:54093185-54093441(-)$1	1	189	216	23.3529
.(((((((...........))))))).	chr9:123171408-123171681(-)$1	1	123	150	21.4892
(.((((((............)))))).	chr19:10273242-10273470(-)$1	1	120	147	24.3006
...((((.............))))...	chr2:71653702-71653989(+)$1	1	180	207	21.4801
((((................)))))))	chrX:53439050-53439304(-)$1	1	46	73	21.3892
.(((((((...........))))))).	chr19:5711702-5712021(-)$1	1	70	97	21.4892
(((((.((............)).))))	chr16:46711155-46711411(-)$1	1	61	88	23.5590
(((((((............)).)))))	chr17:48823798-48824166(+)$1	1	51	78	22.1929
..((((((............)))))).	chr8:124369818-124370042(-)$1	1	32	59	24.5681
(((.(((..............))))))	chr3:123345550-123345853(-)$1	1	74	101	22.9580
((((((((...........))))))))	chr14:31590566-31590787(-)$1	1	56	83	23.3588
(.((((.(...........).))))))	chr2:232577060-232577269(+)$1	1	148	175	22.3750

#PSSM
d : 0.13	c : 0.12	: : 0.10	e : 0.10	= : 0.09	! : 0.07	h : 0.07	b : 0.06	g : 0.04	$ : 0.04	" : 0.03	[ : 0.03	i : 0.03	+ : 0.01	a : 0.01	
d : 0.12	f : 0.10	g : 0.10	! : 0.09	= : 0.09	c : 0.09	e : 0.09	h : 0.06	[ : 0.04	" : 0.03	: : 0.03	i : 0.03	$ : 0.03	b : 0.03	+ : 0.01	# : 0.01	
f : 0.23	e : 0.15	g : 0.10	= : 0.09	d : 0.09	! : 0.07	c : 0.06	h : 0.04	i : 0.03	$ : 0.03	# : 0.03	" : 0.01	[ : 0.01	b : 0.01	
f : 0.23	e : 0.15	d : 0.13	g : 0.10	! : 0.09	= : 0.09	[ : 0.06	h : 0.04	i : 0.03	# : 0.03	b : 0.01	
f : 0.23	d : 0.15	e : 0.13	c : 0.10	g : 0.09	= : 0.07	! : 0.04	y : 0.03	h : 0.03	# : 0.03	: : 0.01	b : 0.01	[ : 0.01	i : 0.01	
f : 0.23	c : 0.20	d : 0.15	e : 0.12	g : 0.07	= : 0.07	y : 0.03	h : 0.03	w : 0.01	i : 0.01	# : 0.01	[ : 0.01	b : 0.01	
f : 0.23	c : 0.20	e : 0.12	d : 0.10	g : 0.07	= : 0.07	y : 0.04	b : 0.04	h : 0.03	v : 0.01	w : 0.01	i : 0.01	[ : 0.01	
w : 0.23	v : 0.13	f : 0.12	c : 0.09	a : 0.07	y : 0.06	g : 0.06	= : 0.04	x : 0.03	e : 0.03	d : 0.03	u : 0.03	b : 0.03	h : 0.01	
u : 0.29	w : 0.23	t : 0.23	v : 0.15	y : 0.06	x : 0.03	
u : 0.29	w : 0.23	t : 0.23	v : 0.15	y : 0.06	x : 0.03	
u : 0.29	w : 0.23	t : 0.23	v : 0.15	y : 0.06	x : 0.03	
u : 0.29	w : 0.23	t : 0.23	v : 0.15	y : 0.06	x : 0.03	
u : 0.29	w : 0.23	t : 0.23	v : 0.15	y : 0.06	x : 0.03	
u : 0.29	w : 0.23	t : 0.23	v : 0.15	y : 0.06	x : 0.03	
u : 0.29	w : 0.23	t : 0.23	v : 0.15	y : 0.06	x : 0.03	
u : 0.29	w : 0.23	t : 0.23	v : 0.15	y : 0.06	x : 0.03	
u : 0.29	w : 0.23	t : 0.23	v : 0.15	y : 0.06	x : 0.03	
u : 0.29	w : 0.23	t : 0.23	v : 0.15	y : 0.06	x : 0.03	
u : 0.29	w : 0.23	t : 0.23	v : 0.15	y : 0.06	x : 0.03	
u : 0.26	w : 0.21	v : 0.13	a : 0.07	y : 0.06	b : 0.04	g : 0.04	x : 0.03	d : 0.03	e : 0.03	= : 0.03	f : 0.01	c : 0.01	
w : 0.21	f : 0.16	d : 0.09	c : 0.09	g : 0.09	] : 0.07	e : 0.06	b : 0.06	= : 0.04	x : 0.03	y : 0.03	v : 0.01	h : 0.01	
f : 0.23	c : 0.16	d : 0.15	e : 0.13	g : 0.09	= : 0.07	x : 0.03	y : 0.03	h : 0.03	3 : 0.01	b : 0.01	] : 0.01	
f : 0.23	c : 0.18	d : 0.16	e : 0.15	g : 0.09	= : 0.07	h : 0.03	] : 0.03	3 : 0.01	y : 0.01	
f : 0.23	d : 0.15	e : 0.15	c : 0.12	g : 0.10	= : 0.07	2 : 0.03	3 : 0.03	] : 0.03	h : 0.03	i : 0.01	7 : 0.01	
f : 0.24	e : 0.13	d : 0.12	g : 0.10	= : 0.09	c : 0.07	] : 0.06	2 : 0.04	3 : 0.03	h : 0.03	i : 0.01	7 : 0.01	6 : 0.01	
f : 0.23	e : 0.13	g : 0.10	= : 0.10	c : 0.07	d : 0.07	2 : 0.04	3 : 0.04	h : 0.04	i : 0.03	] : 0.03	b : 0.03	7 : 0.01	6 : 0.01	
] : 0.13	= : 0.10	d : 0.09	: : 0.09	2 : 0.07	f : 0.07	c : 0.06	h : 0.06	g : 0.06	e : 0.06	b : 0.04	3 : 0.03	i : 0.03	a : 0.01	E : 0.01	7 : 0.01	6 : 0.01	

#score	1476.4207516219753
#seq	65
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_transcript_m1_run1.txt

#BEAR
##eeeeeuuuuuuuuuuuueeeee]	chr4:79786780-79787072(+)$1	292	221	246	23.8239
===[ccctttttttttttccc====	chr13:92003225-92003431(+)$1	206	116	141	23.5681
:ddddbbtttttttttttbb]dddd	chr20:33438855-33439106(-)$1	251	156	181	20.4467
:eeeeevvvvvvvvvvvvveeeeeC	chr7:104742571-104742869(+)$1	298	50	75	21.0638
c!!ddddtttttttttttdddd22c	chr11:67663045-67663319(+)$1	274	130	155	21.9254
ff[cccvvvvvvvvvvvvvccc]ff	chr1:196646725-196646988(+)$1	263	152	177	23.5335
%gggggggtttttttttttgggggg	chr6:36566688-36566940(+)$1	252	98	123	22.7467
fffffwwwwwwwwwwwwwwffffff	chr16:15724007-15724260(-)$1	253	197	222	21.4597
[ffffffuuuuuuuuuuuuffffff	chr9:138836651-138836938(-)$1	287	176	201	23.6617
ggggggwwwwwwwwwwwwwwggggg	chr7:72397428-72397684(+)$1	256	120	145	22.5927
eeedddduuuuuuuuuuuudddd]e	chr2:61722411-61722660(-)$1	249	10	35	22.8109
""fffffftttttttttttffffff	chr8:11689104-11689367(+)$1	263	178	203	22.5887
hhhhhhhvvvvvvvvvvvvvhhhhh	chr2:232577156-232577413(+)$1	257	145	170	20.9364
ggggggguuuuuuuuuuuugggggg	chr4:39459635-39459884(-)$1	249	46	71	24.3849
ii!!ccctttttttttttccc333i	chr1:23403804-23404083(+)$1	279	152	177	23.2207
'gggggggtttttttttttgggggg	chr3:9477521-9477765(+)$1	244	65	90	22.7487
ggggggvvvvvvvvvvvvvgggggg	chr21:34932010-34932262(+)$1	252	24	49	23.8531
===[ccctttttttttttccc====	chr13:92003231-92003448(+)$1	217	110	135	23.5681
""ddddauuuuuuuuuuuua]dddd	chr6:160210257-160210509(-)$1	252	152	177	23.3658
::fffffftttttttttttffffff	chr8:57829614-57829851(+)$1	237	186	211	20.6264
ggggggvvvvvvvvvvvvvgggggg	chr7:128637242-128637511(-)$1	269	228	253	23.8531
fff[cccuuuuuuuuuuuuccc]ff	chr7:103029305-103029525(-)$1	220	169	194	24.1661
Gfffffftttttttttttffffffd	chr9:114178371-114178624(-)$1	253	72	97	21.9403
[ccc[bbtttttttttttbb]ccc]	chr12:125270684-125270965(-)$1	281	228	253	22.1071
:ffffffvvvvvvvvvvvvvfffff	chr11:88345863-88346151(-)$1	288	223	248	22.1175
iiiyyyyyyyyyyyyyyyyiiiiii	chr17:74730954-74731215(-)$1	261	74	99	21.2163
ggggggwwwwwwwwwwwwwwggggg	chr3:185643058-185643327(-)$1	269	136	161	22.5927
hheeeeeuuuuuuuuuuuueeeee:	chr12:104326119-104326398(+)$1	279	178	203	22.1387
iiiiiiiitttttttttttiiiiii	chr1:171482243-171482497(+)$1	254	214	239	22.7646
#ddddwwwwwwwwwwwwwwdddd22	chr21:44520283-44520570(-)$1	287	173	198	20.6387
%fffffftttttttttttffffff2	chr14:102552377-102552624(-)$1	247	197	222	21.7884
""eeeeettttttttttteeeeecc	chrX:151130701-151130965(-)$1	264	185	210	22.6578
&ddddyyyyyyyyyyyyyyyydddd	chr20:34328540-34328810(-)$1	270	107	132	19.8602
ggggggvvvvvvvvvvvvvgggggg	chr3:9516186-9516504(+)$1	318	121	146	23.8531
cccyyyyyyyyyyyyyyyyccc]gg	chr19:51307649-51307908(-)$1	259	82	107	21.2216
[a[eeeeettttttttttteeeee]	chr2:174783127-174783393(-)$1	266	81	106	22.7314
)))cccvvvvvvvvvvvvvccc333	chr9:134027210-134027466(+)$1	256	109	134	22.1811
dd"""bbtttttttttttbb333dd	chr17:30697028-30697264(+)$1	236	54	79	21.0042
!!eeeeewwwwwwwwwwwwwweeee	chr11:61732663-61732914(-)$1	251	197	222	21.7193
:gggggggtttttttttttgggggg	chr6:4049268-4049523(+)$1	255	179	204	22.3733
:ffffffuuuuuuuuuuuuffffff	chr16:28844758-28845009(+)$1	251	195	220	22.7728
ff[dddduuuuuuuuuuuuddddff	chr9:123233853-123234096(-)$1	243	69	94	23.1809
[ffffffuuuuuuuuuuuuffffff	chr5:131039543-131039829(-)$1	286	122	147	23.6617
:bb[ddddtttttttttttddddbb	chr11:62620112-62620345(-)$1	233	11	36	20.3026
========ttttttttttt======	chr2:152292023-152292275(+)$1	252	75	100	23.1536
!!eeeeevvvvvvvvvvvvveeeee	chr5:140966413-140966675(-)$1	262	11	36	23.2045
hhhhhhhuuuuuuuuuuuuhhhhhh	chr5:10378870-10379137(+)$1	267	228	253	21.4081
c"""cccuuuuuuuuuuuuccc22c	chr1:162551169-162551439(+)$1	270	116	141	23.5225
::eeeeeuuuuuuuuuuuueeeee:	chr10:72513690-72513958(+)$1	268	120	145	20.8659
fffyyyyyyyyyyyyyyyyffffff	chr1:245018982-245019278(-)$1	296	178	203	20.7134
d[eeeeeuuuuuuuuuuuueeeeed	chr7:138200022-138200286(+)$1	264	72	97	23.3979
fff[cccuuuuuuuuuuuuccc]ff	chr10:70099240-70099512(+)$1	272	186	211	24.1661
ggggggwwwwwwwwwwwwwwggggg	chr15:93498673-93498918(+)$1	245	194	219	22.5927
gggyyyyyyyyyyyyyyyygggggg	chr1:97250738-97251000(+)$1	262	221	246	21.4117
gggg[bbvvvvvvvvvvvvvbb]gg	chr1:26800556-26800792(+)$1	236	179	204	22.6558
ff[ddddtttttttttttdddd]ff	chr12:123889549-123889805(+)$1	256	191	216	22.2968
i!!ddddtttttttttttddddiii	chr1:52280029-52280275(-)$1	246	210	235	22.5304
ddddcccuuuuuuuuuuuuccc]dd	chr1:150526542-150526832(+)$1	290	192	217	23.2900
iiidddduuuuuuuuuuuuddddee	chr2:61760718-61760980(-)$1	262	147	172	23.2371
##bb[ccctttttttttttccc]bb	chr21:37709235-37709490(+)$1	255	81	106	22.1921
""eeeeewwwwwwwwwwwwwweeee	chr7:158679693-158679989(+)$1	296	37	62	21.6308
=======wwwwwwwwwwwwww====	chr4:79766129-79766384(+)$1	255	161	186	22.1237
fffddddwwwwwwwwwwwwwwdddd	chr16:2312082-2312351(-)$1	269	72	97	20.7700
b:eeeeeuuuuuuuuuuuueeeee:	chr15:55562167-55562435(-)$1	268	85	110	21.4187
ffffffwwwwwwwwwwwwwwfffff	chr16:1915599-1915849(-)$1	250	109	134	21.6756
:gggggggtttttttttttgggggg	chr6:49582202-49582470(-)$1	268	193	218	22.3733
ddccc[attttttttttta]ccc]d	chr12:54674536-54674801(+)$1	265	45	70	22.7133

#otherMatches

#Seq PSSM
CUAUUGAUGUCUAAUAAAUUCAGUU	chr4:79786780-79787072(+)$1	292	221	246	23.8239
CAGGUAGUGUUUAGUUAUCUACUGC	chr13:92003225-92003431(+)$1	206	116	141	23.5681
UGUUUCCAUUCCUCAUGCGGCAAAC	chr20:33438855-33439106(-)$1	251	156	181	20.4467
AGUACCCCAAAACAAAGAAGGUAUG	chr7:104742571-104742869(+)$1	298	50	75	21.0638
gacacgcaaauucgugaagcguucc	chr11:67663045-67663319(+)$1	274	130	155	21.9254
AUCAGCAAUAUUaacaauagcuaau	chr1:196646725-196646988(+)$1	263	152	177	23.5335
GUAUUGGUGUAAUGGAGUAGCUAGU	chr6:36566688-36566940(+)$1	252	98	123	22.7467
UGAAGUAAGGCUUAGAAACCUUCGG	chr16:15724007-15724260(-)$1	253	197	222	21.4597
GUCCCAGGAGAGAGAGAAGCUGGGG	chr9:138836651-138836938(-)$1	287	176	201	23.6617
AUGGGAUGAGAUGUAGACAUUCCCA	chr7:72397428-72397684(+)$1	256	120	145	22.5927
UCUUAAGGAACAUGAUCAACUUAUA	chr2:61722411-61722660(-)$1	249	10	35	22.8109
UAUCCUGUGGCCUAAAGAGACAGGA	chr8:11689104-11689367(+)$1	263	178	203	22.5887
UGCGGAGGGACUGUUUCUGACUUUG	chr2:232577156-232577413(+)$1	257	145	170	20.9364
CCUUCUUGGAAAGAAAAAAAAGAGG	chr4:39459635-39459884(-)$1	249	46	71	24.3849
GACACCAUAGGUAAAAAUUGGCAUU	chr1:23403804-23404083(+)$1	279	152	177	23.2207
CAAGGUAUGCAGGGUAAAAAUAUCU	chr3:9477521-9477765(+)$1	244	65	90	22.7487
AAAACAAAGAUGAUGAUAAUGUUUU	chr21:34932010-34932262(+)$1	252	24	49	23.8531
CAGGUAGUGUUUAGUUAUCUACUGC	chr13:92003231-92003448(+)$1	217	110	135	23.5681
GUUUCUCUCCUUUACCUCCGCAGAA	chr6:160210257-160210509(-)$1	252	152	177	23.3658
ugacccagccaucccauuacugggu	chr8:57829614-57829851(+)$1	237	186	211	20.6264
cccaggaauucaagaccagccuggg	chr7:128637242-128637511(-)$1	269	228	253	23.8531
UUUGAUGAUUUCUAGUUAGCGUGAG	chr7:103029305-103029525(-)$1	220	169	194	24.1661
GGUAGAACUUUCAUAUAUUUCUAUU	chr9:114178371-114178624(-)$1	253	72	97	21.9403
AGCACGCUUGCGUCUUUUGCAUGCC	chr12:125270684-125270965(-)$1	281	228	253	22.1071
auuuaugcagccaaaaaacacauga	chr11:88345863-88346151(-)$1	288	223	248	22.1175
UUAUUUUGUAACAUUUGUCUAACUU	chr17:74730954-74731215(-)$1	261	74	99	21.2163
AGAGCUGAUUUUGACAAUAGAGCUU	chr3:185643058-185643327(-)$1	269	136	161	22.5927
GUAGGUAACAACCUUUAAAUACCUA	chr12:104326119-104326398(+)$1	279	178	203	22.1387
CUUUUGGUUAAUUUUCCCUAUUAAA	chr1:171482243-171482497(+)$1	254	214	239	22.7646
CUCCCACCGUGUGUUAAAAGGGAAA	chr21:44520283-44520570(-)$1	287	173	198	20.6387
AUCCCAGUAAAUUAGACUCUGGGAA	chr14:102552377-102552624(-)$1	247	197	222	21.7884
CCAGCUUUCCUagaccaugagcuca	chrX:151130701-151130965(-)$1	264	185	210	22.6578
UAGCAUUAUUCACGAAACUACUGCU	chr20:34328540-34328810(-)$1	270	107	132	19.8602
AUGAGCCGAGUCCUGUACAGUUCAU	chr3:9516186-9516504(+)$1	318	121	146	23.8531
GAGGUUCUUAAGUUUAUUACUUUUU	chr19:51307649-51307908(-)$1	259	82	107	21.2216
ACAUGAAACACAUAUAUAUUUUUAA	chr2:174783127-174783393(-)$1	266	81	106	22.7314
ACAAGCUCAUGUAACAAUUGCUACC	chr9:134027210-134027466(+)$1	256	109	134	22.1811
ACAUACCACCCUAGUAAAGGCAAGU	chr17:30697028-30697264(+)$1	236	54	79	21.0042
UUUUUAGGCUUACCAUCUAAACUAA	chr11:61732663-61732914(-)$1	251	197	222	21.7193
AGUGCCAUCUUUAAAAAUUGUGGCA	chr6:4049268-4049523(+)$1	255	179	204	22.3733
AUGUCAUAAAAAUGUAAGGAUGGCA	chr16:28844758-28845009(+)$1	251	195	220	22.7728
AGGUACACACUUUAUUCUAUGUGCU	chr9:123233853-123234096(-)$1	243	69	94	23.1809
CAAUUAAGCAUUAUAUUUAUUAAUU	chr5:131039543-131039829(-)$1	286	122	147	23.6617
AACAUUGGUUUUAUUUUUUCCAGGU	chr11:62620112-62620345(-)$1	233	11	36	20.3026
GAGGUAGAUAUUCUUGUUUUUUGCU	chr2:152292023-152292275(+)$1	252	75	100	23.1536
AGUCAUUGCAAGAUGUUUCAGAUGA	chr5:140966413-140966675(-)$1	262	11	36	23.2045
AAGUAUUGAUAUUUAGGAAAAUAUU	chr5:10378870-10379137(+)$1	267	228	253	21.4081
GUCUUGCUCUGUCAUAUACGCAUUC	chr1:162551169-162551439(+)$1	270	116	141	23.5225
UGAGGGAUUUUUUUGGUGUUCCCUG	chr10:72513690-72513958(+)$1	268	120	145	20.8659
ACAGUAACUAAAGUAUUCAUGUGAU	chr1:245018982-245019278(-)$1	296	178	203	20.7134
GUAUCUCCAGGUAAUAAAUGAGAUC	chr7:138200022-138200286(+)$1	264	72	97	23.3979
AAAUAGAUCUACCUUUAAuucuuuu	chr10:70099240-70099512(+)$1	272	186	211	24.1661
GGUAGGGUCUGUACCUCCUACUUGC	chr15:93498673-93498918(+)$1	245	194	219	22.5927
ACUGUUAAGAAAAACCCAAAGUAUU	chr1:97250738-97251000(+)$1	262	221	246	21.4117
GGAUAGCUUACCUCGUCCGUGUCAU	chr1:26800556-26800792(+)$1	236	179	204	22.6558
uuuuuuuuuuuauuuuuugagaugg	chr12:123889549-123889805(+)$1	256	191	216	22.2968
GAUUGUAUACUAAGGCUUUACACAU	chr1:52280029-52280275(-)$1	246	210	235	22.5304
GGAGCUCUUCCGCUGACCUGAGCCU	chr1:150526542-150526832(+)$1	290	192	217	23.2900
AAUUAUCACCUUUAAAAAAGAUAUU	chr2:61760718-61760980(-)$1	262	147	172	23.2371
GUGCCACACUUCUUAAAAUUGUUGC	chr21:37709235-37709490(+)$1	255	81	106	22.1921
AGGAAUCAUGGAAAAGAUAAAGAUU	chr7:158679693-158679989(+)$1	296	37	62	21.6308
UAUUUCAUUUAUAGAUUUCUUUGAA	chr4:79766129-79766384(+)$1	255	161	186	22.1237
GGUGGGUGACCCUGCCACAUAACCC	chr16:2312082-2312351(-)$1	269	72	97	20.7700
AUUUAUCUUUUUUUUUUUUGGUAGU	chr15:55562167-55562435(-)$1	268	85	110	21.4187
ACUUUGGCUUAUGACUACAACAAAG	chr16:1915599-1915849(-)$1	250	109	134	21.6756
AGAAUGUUCUAAAAACAACAACAUU	chr6:49582202-49582470(-)$1	268	193	218	22.3733
CCCUGCCGUCAUGUCUAAGUCAGAG	chr12:54674536-54674801(+)$1	265	45	70	22.7133

#DB
..(((((............))))).	chr4:79786780-79787072(+)$1	1	221	246	23.8239
(((.(((...........)))))))	chr13:92003225-92003431(+)$1	1	116	141	23.5681
.((((((...........)).))))	chr20:33438855-33439106(-)$1	1	156	181	20.4467
.(((((.............)))))(	chr7:104742571-104742869(+)$1	1	50	75	21.0638
(..((((...........))))..)	chr11:67663045-67663319(+)$1	1	130	155	21.9254
((.(((.............))).))	chr1:196646725-196646988(+)$1	1	152	177	23.5335
.(((((((...........))))))	chr6:36566688-36566940(+)$1	1	98	123	22.7467
(((((..............))))))	chr16:15724007-15724260(-)$1	1	197	222	21.4597
.((((((............))))))	chr9:138836651-138836938(-)$1	1	176	201	23.6617
((((((..............)))))	chr7:72397428-72397684(+)$1	1	120	145	22.5927
(((((((............)))).)	chr2:61722411-61722660(-)$1	1	10	35	22.8109
..((((((...........))))))	chr8:11689104-11689367(+)$1	1	178	203	22.5887
(((((((.............)))))	chr2:232577156-232577413(+)$1	1	145	170	20.9364
(((((((............))))))	chr4:39459635-39459884(-)$1	1	46	71	24.3849
((..(((...........)))...)	chr1:23403804-23404083(+)$1	1	152	177	23.2207
.(((((((...........))))))	chr3:9477521-9477765(+)$1	1	65	90	22.7487
((((((.............))))))	chr21:34932010-34932262(+)$1	1	24	49	23.8531
(((.(((...........)))))))	chr13:92003231-92003448(+)$1	1	110	135	23.5681
..(((((............).))))	chr6:160210257-160210509(-)$1	1	152	177	23.3658
..((((((...........))))))	chr8:57829614-57829851(+)$1	1	186	211	20.6264
((((((.............))))))	chr7:128637242-128637511(-)$1	1	228	253	23.8531
(((.(((............))).))	chr7:103029305-103029525(-)$1	1	169	194	24.1661
(((((((...........))))))(	chr9:114178371-114178624(-)$1	1	72	97	21.9403
.(((.((...........)).))).	chr12:125270684-125270965(-)$1	1	228	253	22.1071
.((((((.............)))))	chr11:88345863-88346151(-)$1	1	223	248	22.1175
(((................))))))	chr17:74730954-74731215(-)$1	1	74	99	21.2163
((((((..............)))))	chr3:185643058-185643327(-)$1	1	136	161	22.5927
))(((((............))))).	chr12:104326119-104326398(+)$1	1	178	203	22.1387
((((((((...........))))))	chr1:171482243-171482497(+)$1	1	214	239	22.7646
.((((..............))))..	chr21:44520283-44520570(-)$1	1	173	198	20.6387
.((((((...........)))))).	chr14:102552377-102552624(-)$1	1	197	222	21.7884
..(((((...........)))))))	chrX:151130701-151130965(-)$1	1	185	210	22.6578
.((((................))))	chr20:34328540-34328810(-)$1	1	107	132	19.8602
((((((.............))))))	chr3:9516186-9516504(+)$1	1	121	146	23.8531
(((................))).))	chr19:51307649-51307908(-)$1	1	82	107	21.2216
.(.(((((...........))))).	chr2:174783127-174783393(-)$1	1	81	106	22.7314
...(((.............)))...	chr9:134027210-134027466(+)$1	1	109	134	22.1811
((...((...........))...))	chr17:30697028-30697264(+)$1	1	54	79	21.0042
..(((((..............))))	chr11:61732663-61732914(-)$1	1	197	222	21.7193
.(((((((...........))))))	chr6:4049268-4049523(+)$1	1	179	204	22.3733
.((((((............))))))	chr16:28844758-28845009(+)$1	1	195	220	22.7728
((.((((............))))))	chr9:123233853-123234096(-)$1	1	69	94	23.1809
.((((((............))))))	chr5:131039543-131039829(-)$1	1	122	147	23.6617
.((.((((...........))))))	chr11:62620112-62620345(-)$1	1	11	36	20.3026
((((((((...........))))))	chr2:152292023-152292275(+)$1	1	75	100	23.1536
..(((((.............)))))	chr5:140966413-140966675(-)$1	1	11	36	23.2045
(((((((............))))))	chr5:10378870-10379137(+)$1	1	228	253	21.4081
(...(((............)))..)	chr1:162551169-162551439(+)$1	1	116	141	23.5225
..(((((............))))).	chr10:72513690-72513958(+)$1	1	120	145	20.8659
(((................))))))	chr1:245018982-245019278(-)$1	1	178	203	20.7134
(.(((((............))))))	chr7:138200022-138200286(+)$1	1	72	97	23.3979
(((.(((............))).))	chr10:70099240-70099512(+)$1	1	186	211	24.1661
((((((..............)))))	chr15:93498673-93498918(+)$1	1	194	219	22.5927
(((................))))))	chr1:97250738-97251000(+)$1	1	221	246	21.4117
((((.((.............)).))	chr1:26800556-26800792(+)$1	1	179	204	22.6558
((.((((...........)))).))	chr12:123889549-123889805(+)$1	1	191	216	22.2968
(..((((...........)))))))	chr1:52280029-52280275(-)$1	1	210	235	22.5304
(((((((............))).))	chr1:150526542-150526832(+)$1	1	192	217	23.2900
)))((((............))))((	chr2:61760718-61760980(-)$1	1	147	172	23.2371
..((.(((...........))).))	chr21:37709235-37709490(+)$1	1	81	106	22.1921
..(((((..............))))	chr7:158679693-158679989(+)$1	1	37	62	21.6308
(((((((..............))))	chr4:79766129-79766384(+)$1	1	161	186	22.1237
(((((((..............))))	chr16:2312082-2312351(-)$1	1	72	97	20.7700
).(((((............))))).	chr15:55562167-55562435(-)$1	1	85	110	21.4187
((((((..............)))))	chr16:1915599-1915849(-)$1	1	109	134	21.6756
.(((((((...........))))))	chr6:49582202-49582470(-)$1	1	193	218	22.3733
(((((.(...........).))).)	chr12:54674536-54674801(+)$1	1	45	70	22.7133

#PSSM
: : 0.13	f : 0.13	g : 0.13	i : 0.07	= : 0.05	[ : 0.05	" : 0.05	d : 0.05	# : 0.04	c : 0.04	h : 0.04	% : 0.02	! : 0.02	e : 0.01	' : 0.01	G : 0.01	& : 0.01	) : 0.01	b : 0.01	
f : 0.22	g : 0.19	d : 0.08	" : 0.07	= : 0.05	! : 0.05	i : 0.05	h : 0.04	: : 0.04	# : 0.02	e : 0.02	c : 0.02	a : 0.01	) : 0.01	b : 0.01	[ : 0.01	
f : 0.20	g : 0.19	e : 0.16	d : 0.07	= : 0.05	[ : 0.05	! : 0.04	c : 0.04	i : 0.04	h : 0.02	" : 0.02	b : 0.02	) : 0.01	
d : 0.17	g : 0.17	e : 0.16	f : 0.14	[ : 0.07	c : 0.05	y : 0.05	h : 0.02	" : 0.02	= : 0.02	! : 0.01	i : 0.01	b : 0.01	
d : 0.17	e : 0.16	g : 0.16	c : 0.14	f : 0.14	y : 0.05	[ : 0.04	h : 0.02	= : 0.02	i : 0.01	" : 0.01	
e : 0.16	g : 0.16	c : 0.14	d : 0.13	f : 0.13	y : 0.07	b : 0.05	w : 0.02	h : 0.02	= : 0.02	i : 0.01	[ : 0.01	
e : 0.14	c : 0.11	d : 0.11	f : 0.11	v : 0.08	w : 0.08	g : 0.07	y : 0.07	b : 0.05	h : 0.02	a : 0.02	= : 0.02	i : 0.01	
u : 0.26	t : 0.19	v : 0.14	w : 0.14	y : 0.07	g : 0.05	f : 0.02	i : 0.01	e : 0.01	d : 0.01	= : 0.01	c : 0.01	
t : 0.35	u : 0.26	v : 0.14	w : 0.14	y : 0.07	
t : 0.35	u : 0.26	v : 0.14	w : 0.14	y : 0.07	
t : 0.35	u : 0.26	v : 0.14	w : 0.14	y : 0.07	
t : 0.35	u : 0.26	v : 0.14	w : 0.14	y : 0.07	
t : 0.35	u : 0.26	v : 0.14	w : 0.14	y : 0.07	
t : 0.35	u : 0.26	v : 0.14	w : 0.14	y : 0.07	
t : 0.35	u : 0.26	v : 0.14	w : 0.14	y : 0.07	
t : 0.35	u : 0.26	v : 0.14	w : 0.14	y : 0.07	
t : 0.35	u : 0.26	v : 0.14	w : 0.14	y : 0.07	
t : 0.35	u : 0.26	v : 0.14	w : 0.14	y : 0.07	
u : 0.26	t : 0.16	v : 0.14	w : 0.14	y : 0.07	c : 0.04	b : 0.04	d : 0.04	f : 0.02	e : 0.01	a : 0.01	
c : 0.16	g : 0.13	f : 0.13	e : 0.11	d : 0.11	w : 0.11	v : 0.05	b : 0.04	i : 0.02	a : 0.01	y : 0.01	= : 0.01	h : 0.01	] : 0.01	
c : 0.17	g : 0.17	f : 0.16	e : 0.13	d : 0.11	w : 0.05	] : 0.04	h : 0.02	i : 0.02	y : 0.01	3 : 0.01	= : 0.01	b : 0.01	
d : 0.17	g : 0.17	e : 0.16	f : 0.16	c : 0.14	= : 0.05	h : 0.02	3 : 0.02	i : 0.02	b : 0.01	
g : 0.17	e : 0.16	f : 0.16	d : 0.13	] : 0.11	= : 0.05	3 : 0.04	i : 0.04	2 : 0.02	h : 0.02	c : 0.02	
f : 0.23	g : 0.20	e : 0.16	d : 0.08	= : 0.05	2 : 0.04	i : 0.04	] : 0.02	h : 0.02	3 : 0.02	c : 0.02	b : 0.02	
f : 0.20	g : 0.20	d : 0.13	e : 0.07	= : 0.05	i : 0.05	] : 0.04	c : 0.04	: : 0.04	h : 0.02	2 : 0.02	b : 0.02	C : 0.01	3 : 0.01	

#score	1499.1163166549097
#seq	67
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_CDS_m3_run2.txt

#BEAR
eee[bbnnnnnbbeee	chr2:179434271-179434507(+)$1	236	5	21	9.3202
======nnnnn=====	chr2:179427974-179428276(+)$1	302	136	152	10.3247
!!ddddnnnnndddd]	chr7:141463800-141464072(+)$1	272	167	183	10.9909
ffffffnnnnnfffff	chr2:179438959-179439218(+)$1	259	225	241	9.2087
ggggggnnnnnggggg	chr2:179424328-179424551(+)$1	223	81	97	10.3050
c[ddddnnnnndddd]	chr7:141464064-141464311(+)$1	247	6	22	10.8546
c!!cccnnnnnccc22	chr10:71914713-71914991(-)$1	278	74	90	9.9569
!!ddddnnnnndddd2	chr3:99569365-99569704(+)$1	339	226	242	10.8457
iii[bbnnnnnbb]ii	chr2:179408978-179409249(+)$1	271	230	246	8.8040
:eeeeennnnneeeee	chr3:99568622-99568845(+)$1	223	185	201	10.5202
b[ddddnnnnndddd]	chr19:45912055-45912311(-)$1	256	14	30	10.6604
ggddddnnnnndddd:	chr12:133578178-133578447(+)$1	269	216	232	9.6659
ff[cccnnnnnccc22	chrX:71427139-71427413(+)$1	274	179	195	9.6651
ggggggnnnnnggggg	chr2:179433927-179434165(+)$1	238	150	166	10.3050
ggggggnnnnnggggg	chr19:37825980-37826230(+)$1	250	16	32	10.3050
a[eeeeellleeeee]	chr2:186654581-186654815(-)$1	234	61	77	6.1426
##ddddnnnnndddd>	chr2:179425562-179425812(+)$1	250	148	164	10.4130
ggggggnnnnnggggg	chr3:99567658-99567918(+)$1	260	118	134	10.3050
"eeeeennnnneeeee	chr2:186655992-186656237(-)$1	245	160	176	11.4272
ffffffnnnnnfffff	chr2:179428629-179428867(+)$1	238	147	163	9.2087
e[ddddnnnnndddd]	chr1:174417668-174417946(+)$1	278	158	174	10.7410
++ddddnnnnnddddc	chr2:179431166-179431420(+)$1	254	156	172	9.1954
:eeeeennnnneeeee	chr2:179436510-179436756(+)$1	246	227	243	10.5202
ffffffnnnnnfffff	chr2:179467093-179467351(+)$1	258	100	116	9.2087
#eeeeennnnneeeee	chr20:37125767-37126104(+)$1	337	53	69	11.3989
dd[cccnnnnnccc]d	chr5:112228298-112228614(-)$1	316	87	103	9.4819
c[eeeeellleeeee]	chr1:91967158-91967409(+)$1	251	143	159	6.1241
iiddddnnnnndddd:	chr7:141490134-141490384(+)$1	250	176	192	9.6459
ggggggnnnnnggggg	chr2:179434528-179434815(+)$1	287	136	152	10.3050
!!ddddnnnnndddd2	chr19:45911588-45911841(-)$1	253	145	161	10.8457
[bbcccnnnnnccc]b	chr2:186661167-186661443(-)$1	276	106	122	9.0751
Ceeeeennnnneeeee	chr2:179465872-179466142(+)$1	270	12	28	10.2791
ccddddnnnnndddd2	chr6:132031144-132031398(+)$1	254	175	191	10.4523
ggggggnnnnnggggg	chr2:186658456-186658721(-)$1	265	215	231	10.3050
e[ddddnnnnndddde	chr2:179424783-179425026(+)$1	243	140	156	10.6522
[eeeeennnnneeeee	chr2:186658169-186658415(-)$1	246	157	173	11.4195
ggggggnnnnnggggg	chr3:99568250-99568528(+)$1	278	204	220	10.3050
eeeeeennnnneeeee	chr16:28109853-28110107(-)$1	254	113	129	11.1761
:eeeeennnnneeeee	chr2:179431265-179431526(+)$1	261	2	18	10.5202
"""cccnnnnnccc22	chr2:186660776-186661060(-)$1	284	23	39	9.8400
!eeeeennnnneeeee	chr2:186657691-186657988(-)$1	297	119	135	11.4646
ccccccnnnnncccii	chr7:141478254-141478559(+)$1	305	135	151	9.9012
ffddddnnnnndddd3	chr3:99569627-99569901(+)$1	274	109	125	10.5008
======nnnnn=====	chr22:51162450-51162706(+)$1	256	11	27	10.3247
ffffffnnnnnfffff	chr2:179432051-179432307(+)$1	256	45	61	9.2087
!eeeeennnnneeeee	chr2:179429451-179429698(+)$1	247	88	104	11.4646
:eeeeennnnneeeee	chr2:179430836-179431098(+)$1	262	82	98	10.5202
"eeeeennnnneeeee	chr3:99567098-99567401(+)$1	303	30	46	11.4272
eeeeeannnnna]eee	chrX:71426787-71427062(+)$1	275	209	225	10.5136
:eeeeennnnneeeee	chr7:141478740-141478990(+)$1	250	196	212	10.5202
deeeeennnnneeeee	chr2:186655355-186655601(-)$1	246	83	99	11.1086

#otherMatches

#Seq PSSM
AGGAGCCACCUGCCCU	chr2:179434271-179434507(+)$1	236	5	21	9.3202
GAAGUGUCCGUCACUU	chr2:179427974-179428276(+)$1	302	136	152	10.3247
CUCACCGAGGGGGUGU	chr7:141463800-141464072(+)$1	272	167	183	10.9909
UAAGUCCACUUGAUUU	chr2:179438959-179439218(+)$1	259	225	241	9.2087
UGUUGGCAUUUUCAAU	chr2:179424328-179424551(+)$1	223	81	97	10.3050
CCAAGAGAAUGUCUUU	chr7:141464064-141464311(+)$1	247	6	22	10.8546
AUUUUAUUCACUAACU	chr10:71914713-71914991(-)$1	278	74	90	9.9569
UAAUUGUGUCUUGGUC	chr3:99569365-99569704(+)$1	339	226	242	10.8457
GGAGCAGAAGGUGGUC	chr2:179408978-179409249(+)$1	271	230	246	8.8040
AAUUUGUUUUUUAAAU	chr3:99568622-99568845(+)$1	223	185	201	10.5202
CAGAGGCUUCAUCUCC	chr19:45912055-45912311(-)$1	256	14	30	10.6604
GCGGCAGUCUUUGCCU	chr12:133578178-133578447(+)$1	269	216	232	9.6659
UGAGCAGAGAAUGUCC	chrX:71427139-71427413(+)$1	274	179	195	9.6651
ACAAAGGCAGACUUUG	chr2:179433927-179434165(+)$1	238	150	166	10.3050
GGAGCGGACUGCGCUU	chr19:37825980-37826230(+)$1	250	16	32	10.3050
CUACUUAUUCUAGGUU	chr2:186654581-186654815(-)$1	234	61	77	6.1426
CCUGCAAUGUCUGCAU	chr2:179425562-179425812(+)$1	250	148	164	10.4130
CUGUGUUUUGUACAUG	chr3:99567658-99567918(+)$1	260	118	134	10.3050
AAAGAUUUUUUAUCUU	chr2:186655992-186656237(-)$1	245	160	176	11.4272
GGUAUAGACUUUGUAC	chr2:179428629-179428867(+)$1	238	147	163	9.2087
GUGCCACGUCUUGGCU	chr1:174417668-174417946(+)$1	278	158	174	10.7410
GAUGGGUUUACCCCAG	chr2:179431166-179431420(+)$1	254	156	172	9.1954
CACUGGCACACUCAGU	chr2:179436510-179436756(+)$1	246	227	243	10.5202
UGCAUUUCUACAAUGU	chr2:179467093-179467351(+)$1	258	100	116	9.2087
CUUUACGACGAGUAAG	chr20:37125767-37126104(+)$1	337	53	69	11.3989
AUUUCUUUUGUAGGUG	chr5:112228298-112228614(-)$1	316	87	103	9.4819
AUGAGCCAAUGGCUUU	chr1:91967158-91967409(+)$1	251	143	159	6.1241
CCUGGCUGGCUGCCGA	chr7:141490134-141490384(+)$1	250	176	192	9.6459
CUUUUGGUAAGCAGAA	chr2:179434528-179434815(+)$1	287	136	152	10.3050
GGUGGGUUGCCCCCAA	chr19:45911588-45911841(-)$1	253	145	161	10.8457
AACCUGAUUAACAGUG	chr2:186661167-186661443(-)$1	276	106	122	9.0751
AGGAUCAGGAGGAUCU	chr2:179465872-179466142(+)$1	270	12	28	10.2791
CCUGAUCUUUCAUCAU	chr6:132031144-132031398(+)$1	254	175	191	10.4523
AAAAACGCUCUGUUUU	chr2:186658456-186658721(-)$1	265	215	231	10.3050
UGCCCUAAUUAAGGGA	chr2:179424783-179425026(+)$1	243	140	156	10.6522
UCAGAAUUUUCUUCUG	chr2:186658169-186658415(-)$1	246	157	173	11.4195
ACUUGUACUUAGCAAG	chr3:99568250-99568528(+)$1	278	204	220	10.3050
UGUUGUUGGCUGCAGC	chr16:28109853-28110107(-)$1	254	113	129	11.1761
CAUCUGCUUUACAGAU	chr2:179431265-179431526(+)$1	261	2	18	10.5202
AAUAGUAUUUGACUCG	chr2:186660776-186661060(-)$1	284	23	39	9.8400
AUAAGUAUUUAAUUUA	chr2:186657691-186657988(-)$1	297	119	135	11.4646
UUGGGUCAAAAGCCAU	chr7:141478254-141478559(+)$1	305	135	151	9.9012
UUGGAUUUUCUGUCUU	chr3:99569627-99569901(+)$1	274	109	125	10.5008
AAUGCAAAUGCUGUGU	chr22:51162450-51162706(+)$1	256	11	27	10.3247
UUUUACAAUAAGUAAA	chr2:179432051-179432307(+)$1	256	45	61	9.2087
AGCCAAUAAUUUUGGU	chr2:179429451-179429698(+)$1	247	88	104	11.4646
UGGGUAUAGUUUACUC	chr2:179430836-179431098(+)$1	262	82	98	10.5202
UAUUACUUACUGUAAU	chr3:99567098-99567401(+)$1	303	30	46	11.4272
ACCACCUACUUGAGUG	chrX:71426787-71427062(+)$1	275	209	225	10.5136
UUCUGGAAUCCCCAGA	chr7:141478740-141478990(+)$1	250	196	212	10.5202
GGUAUUUAUUUGGUGC	chr2:186655355-186655601(-)$1	246	83	99	11.1086

#DB
(((.((.....)))))	chr2:179434271-179434507(+)$1	1	5	21	9.3202
((((((.....)))))	chr2:179427974-179428276(+)$1	1	136	152	10.3247
..((((.....)))).	chr7:141463800-141464072(+)$1	1	167	183	10.9909
((((((.....)))))	chr2:179438959-179439218(+)$1	1	225	241	9.2087
((((((.....)))))	chr2:179424328-179424551(+)$1	1	81	97	10.3050
(.((((.....)))).	chr7:141464064-141464311(+)$1	1	6	22	10.8546
(..(((.....)))..	chr10:71914713-71914991(-)$1	1	74	90	9.9569
..((((.....)))).	chr3:99569365-99569704(+)$1	1	226	242	10.8457
(((.((.....)).))	chr2:179408978-179409249(+)$1	1	230	246	8.8040
.(((((.....)))))	chr3:99568622-99568845(+)$1	1	185	201	10.5202
(.((((.....)))).	chr19:45912055-45912311(-)$1	1	14	30	10.6604
))((((.....)))).	chr12:133578178-133578447(+)$1	1	216	232	9.6659
((.(((.....)))..	chrX:71427139-71427413(+)$1	1	179	195	9.6651
((((((.....)))))	chr2:179433927-179434165(+)$1	1	150	166	10.3050
((((((.....)))))	chr19:37825980-37826230(+)$1	1	16	32	10.3050
(.(((((...))))).	chr2:186654581-186654815(-)$1	1	61	77	6.1426
..((((.....)))).	chr2:179425562-179425812(+)$1	1	148	164	10.4130
((((((.....)))))	chr3:99567658-99567918(+)$1	1	118	134	10.3050
.(((((.....)))))	chr2:186655992-186656237(-)$1	1	160	176	11.4272
((((((.....)))))	chr2:179428629-179428867(+)$1	1	147	163	9.2087
(.((((.....)))).	chr1:174417668-174417946(+)$1	1	158	174	10.7410
..((((.....)))))	chr2:179431166-179431420(+)$1	1	156	172	9.1954
.(((((.....)))))	chr2:179436510-179436756(+)$1	1	227	243	10.5202
((((((.....)))))	chr2:179467093-179467351(+)$1	1	100	116	9.2087
.(((((.....)))))	chr20:37125767-37126104(+)$1	1	53	69	11.3989
((.(((.....))).)	chr5:112228298-112228614(-)$1	1	87	103	9.4819
(.(((((...))))).	chr1:91967158-91967409(+)$1	1	143	159	6.1241
))((((.....)))).	chr7:141490134-141490384(+)$1	1	176	192	9.6459
((((((.....)))))	chr2:179434528-179434815(+)$1	1	136	152	10.3050
..((((.....)))).	chr19:45911588-45911841(-)$1	1	145	161	10.8457
.(((((.....))).)	chr2:186661167-186661443(-)$1	1	106	122	9.0751
((((((.....)))))	chr2:179465872-179466142(+)$1	1	12	28	10.2791
((((((.....)))).	chr6:132031144-132031398(+)$1	1	175	191	10.4523
((((((.....)))))	chr2:186658456-186658721(-)$1	1	215	231	10.3050
(.((((.....)))))	chr2:179424783-179425026(+)$1	1	140	156	10.6522
.(((((.....)))))	chr2:186658169-186658415(-)$1	1	157	173	11.4195
((((((.....)))))	chr3:99568250-99568528(+)$1	1	204	220	10.3050
((((((.....)))))	chr16:28109853-28110107(-)$1	1	113	129	11.1761
.(((((.....)))))	chr2:179431265-179431526(+)$1	1	2	18	10.5202
...(((.....)))..	chr2:186660776-186661060(-)$1	1	23	39	9.8400
.(((((.....)))))	chr2:186657691-186657988(-)$1	1	119	135	11.4646
)))(((.....)))((	chr7:141478254-141478559(+)$1	1	135	151	9.9012
((((((.....)))).	chr3:99569627-99569901(+)$1	1	109	125	10.5008
((((((.....)))))	chr22:51162450-51162706(+)$1	1	11	27	10.3247
((((((.....)))))	chr2:179432051-179432307(+)$1	1	45	61	9.2087
.(((((.....)))))	chr2:179429451-179429698(+)$1	1	88	104	11.4646
.(((((.....)))))	chr2:179430836-179431098(+)$1	1	82	98	10.5202
.(((((.....)))))	chr3:99567098-99567401(+)$1	1	30	46	11.4272
((((((.....).)))	chrX:71426787-71427062(+)$1	1	209	225	10.5136
.(((((.....)))))	chr7:141478740-141478990(+)$1	1	196	212	10.5202
)(((((.....)))))	chr2:186655355-186655601(-)$1	1	83	99	11.1086

#PSSM
g : 0.15	f : 0.11	e : 0.09	! : 0.09	c : 0.09	: : 0.09	" : 0.05	= : 0.03	i : 0.03	# : 0.03	d : 0.03	[ : 0.03	b : 0.01	a : 0.01	+ : 0.01	C : 0.01	
e : 0.31	g : 0.15	f : 0.11	[ : 0.11	! : 0.07	= : 0.03	i : 0.03	c : 0.03	# : 0.01	+ : 0.01	d : 0.01	b : 0.01	" : 0.01	
e : 0.35	d : 0.25	g : 0.13	f : 0.07	= : 0.03	[ : 0.03	! : 0.01	i : 0.01	b : 0.01	" : 0.01	c : 0.01	
e : 0.33	d : 0.25	g : 0.13	c : 0.11	f : 0.07	[ : 0.03	= : 0.03	
e : 0.33	d : 0.25	g : 0.13	c : 0.11	f : 0.07	b : 0.03	= : 0.03	
e : 0.31	d : 0.25	g : 0.13	c : 0.11	f : 0.07	b : 0.03	= : 0.03	a : 0.01	
n : 0.96	e : 0.03	
n : 0.96	l : 0.03	
n : 0.96	l : 0.03	
n : 0.96	l : 0.03	
n : 0.96	e : 0.03	
e : 0.31	d : 0.25	g : 0.13	c : 0.11	f : 0.07	b : 0.03	= : 0.03	a : 0.01	
e : 0.31	d : 0.25	g : 0.13	c : 0.11	f : 0.07	b : 0.03	= : 0.03	] : 0.01	
e : 0.35	d : 0.25	g : 0.13	c : 0.11	f : 0.07	= : 0.03	] : 0.01	
e : 0.35	d : 0.25	g : 0.13	f : 0.07	2 : 0.05	= : 0.03	i : 0.03	] : 0.03	
e : 0.33	g : 0.13	] : 0.11	2 : 0.11	f : 0.07	= : 0.03	i : 0.03	: : 0.03	> : 0.01	c : 0.01	d : 0.01	b : 0.01	3 : 0.01	

#score	517.6774120005844
#seq	51
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_transcript_m3_run2.txt

#BEAR
gggggnnnnngggggg	chrX:73500797-73501020(-)$1	223	56	72	10.1951
!!cccnnnnnccc]bb	chr17:66526006-66526228(+)$1	222	79	95	10.4230
fffffnnnnnffffff	chr2:131116348-131116641(+)$1	293	144	160	9.8283
dd[bbnnnnnbb]ddd	chr15:62302569-62302842(-)$1	273	8	24	9.6984
[a!!annnnna22a]c	chr17:40970136-40970458(-)$1	322	30	46	9.4620
bb[bbnnnnnbb]bb]	chr1:171492341-171492594(+)$1	253	131	147	9.2006
eeeeennnnneeeee4	chr5:32390396-32390644(-)$1	248	203	219	10.6320
cc[bbnnnnnbbccc:	chr17:74060066-74060353(-)$1	287	260	276	9.1663
!!cccnnnnncccbb3	chr12:1192227-1192521(+)$1	294	183	199	10.2576
"ddddnnnnndddd]f	chr19:54649242-54649514(+)$1	272	44	60	9.4169
[ddddnnnnndddd]c	chr13:20216152-20216442(+)$1	290	85	101	9.4758
eeeeennnnneeeee:	chr12:53345264-53345529(+)$1	265	121	137	9.8377
fffffnnnnnffffff	chr17:4790802-4791029(+)$1	227	22	38	9.8283
iiiiinnnnniiiiii	chr19:39196583-39196822(+)$1	239	85	101	10.1253
dd[bbnnnnnbbdddd	chr17:80129476-80129745(-)$1	269	189	205	9.5737
iiiiinnnnniiiiii	chr17:35993216-35993478(-)$1	262	14	30	10.1253
eeeeennnnneeeee]	chr14:51401724-51401982(-)$1	258	169	185	10.6422
d[cccnnnnnccc]dd	chr3:101292941-101293208(+)$1	267	221	237	10.4302
dd[bbnnnnnbbdddd	chr6:91256930-91257201(-)$1	271	137	153	9.5737
eeeeennnnneeeeeC	chrX:53610475-53610727(-)$1	252	28	44	9.6567
eeeeennnnneeeeeb	chr12:103310748-103310977(-)$1	229	83	99	10.4349
fffffnnnnnffffff	chr13:113478596-113478843(+)$1	247	229	245	9.8283
a[cccnnnnnccc]a2	chr4:3533835-3534059(-)$1	224	65	81	10.5268
##cccnnnnnccc22f	chr2:135891412-135891668(+)$1	256	69	85	10.0412
c[cccnnnnnccc444	chr18:10752559-10752828(-)$1	269	41	57	10.5821
eeeeennnnneeeee:	chr16:2810287-2810556(+)$1	269	208	224	9.8377
eeeeennnnneeeee]	chr9:71862912-71863164(+)$1	252	181	197	10.6422
""cccnnnnnccceee	chr9:130119397-130119739(+)$1	342	105	121	10.6169
gggbbnnnnnbb]ggg	chr12:56211349-56211594(-)$1	245	163	179	10.0339
eeeeennnnneeeeeb	chr2:10942526-10942771(-)$1	245	36	52	10.4349
"""bbnnnnnbb333e	chr10:79800296-79800504(+)$1	208	150	166	9.9239
eeeeennnnneeeee]	chr15:57212076-57212286(+)$1	210	93	109	10.6422
eeeeennnnneeeee=	chr11:71195264-71195585(+)$1	321	214	230	10.5719
fffffnnnnnffffff	chr17:38787764-38788046(-)$1	282	121	137	9.8283
a[cccnnnnnccc]a4	chr1:43852425-43852657(-)$1	232	23	39	10.7181
ee[bbnnnnnbb]eee	chr22:29999916-30000220(+)$1	304	159	175	10.3452
eeeeennnnneeeee:	chr9:35724727-35725019(-)$1	292	102	118	9.8377
eeeeennnnneeeee6	chr2:234750597-234750896(-)$1	299	103	119	10.2458
[ddddnnnnnddddee	chr17:76210660-76210901(+)$1	241	86	102	9.4989
eeeeennnnneeeee5	chr1:29314213-29314518(+)$1	305	102	118	9.8895
bddddnnnnndddd]b	chr12:56749866-56750110(-)$1	244	136	152	9.0987
ff[bbnnnnnbb]fff	chr18:55276559-55276776(-)$1	217	144	160	9.9527
e[cccnnnnnccceee	chr17:37673656-37673898(+)$1	242	167	183	10.7790
dd[bbnnnnnbb]ddd	chr20:48273074-48273335(-)$1	261	152	168	9.6984
eeeeennnnneeeeeE	chr16:57790178-57790456(+)$1	278	169	185	9.7025
b[cccnnnnnccc]bb	chr2:32656021-32656255(+)$1	234	197	213	10.1869
ddd[annnnna]dddd	chr1:206632149-206632400(+)$1	251	89	105	9.3502
##cccnnnnnccc22f	chr12:132497939-132498196(+)$1	257	195	211	10.0412
ddcccnnnnnccc]dd	chr2:234344863-234345127(+)$1	264	219	235	10.2054
fffffnnnnnffffff	chr4:76721723-76721999(+)$1	276	183	199	9.8283
fffffnnnnnffffff	chr2:54882988-54883217(+)$1	229	151	167	9.8283
e[cccnnnnnccc]ee	chr14:24032500-24032733(-)$1	233	127	143	10.7907
eeeeennnnneeeee9	chr2:27552004-27552241(-)$1	237	172	188	10.1014
iiiiinnnnniiiiii	chr1:16973934-16974170(+)$1	236	136	152	10.1253
gggggnnnnngggggg	chr1:44137174-44137446(+)$1	272	125	141	10.1951
b[cccnnnnnccc]bb	chr5:176965840-176966162(-)$1	322	183	199	10.1869
eeeeennnnneeeee2	chr12:121747462-121747764(-)$1	302	65	81	10.4408
"""bbnnnnnbb333d	chr16:1735364-1735625(+)$1	261	139	155	9.8984
eeeeennnnneeeeef	chr15:64426760-64427070(+)$1	310	285	301	10.5347
bbcccnnnnnccc]bb	chr18:11999045-11999289(+)$1	244	186	202	9.7374
bb[bbnnnnnbb]bbc	chrX:135593990-135594256(+)$1	266	108	124	9.1090
ccc[annnnna]ccc2	chr9:140685258-140685525(+)$1	267	123	139	9.6882
gggggnnnnngggggg	chr7:65546723-65547004(+)$1	281	64	80	10.1951
fffffnnnnnffffff	chr2:219604743-219604985(+)$1	242	90	106	9.8283
b[cccnnnnncccbb]	chr3:8667828-8668099(-)$1	271	92	108	9.9892
!a[bbnnnnnbb]a22	chr11:129939782-129940015(+)$1	233	26	42	9.7576
fffffnnnnnffffff	chr14:35480692-35480940(+)$1	248	142	158	9.8283

#otherMatches

#Seq PSSM
uuuguuaugcauaaaa	chrX:73500797-73501020(-)$1	223	56	72	10.1951
GGUCAGAAAAUGAAGA	chr17:66526006-66526228(+)$1	222	79	95	10.4230
GGCCGGCAGUCGGCCA	chr2:131116348-131116641(+)$1	293	144	160	9.8283
UAUGAACAUAUCUUAU	chr15:62302569-62302842(-)$1	273	8	24	9.6984
GUUUGGAGAUCUUAGA	chr17:40970136-40970458(-)$1	322	30	46	9.4620
AAGCUGAUGAAGGUUG	chr1:171492341-171492594(+)$1	253	131	147	9.2006
AGGCCCAUUAGGCCUU	chr5:32390396-32390644(-)$1	248	203	219	10.6320
CAAUCGCGUGGAUGCC	chr17:74060066-74060353(-)$1	287	260	276	9.1663
AGCAGCAGGACUGGCG	chr12:1192227-1192521(+)$1	294	183	199	10.2576
AGCAGGUGCUCUGCAG	chr19:54649242-54649514(+)$1	272	44	60	9.4169
UUUAUUUUCUAUAACA	chr13:20216152-20216442(+)$1	290	85	101	9.4758
CUCGGAAGAACCGAGA	chr12:53345264-53345529(+)$1	265	121	137	9.8377
GAACCAACAGGGUUCU	chr17:4790802-4791029(+)$1	227	22	38	9.8283
UUGUGUGUUUUGCAGA	chr19:39196583-39196822(+)$1	239	85	101	10.1253
GGUACUUGCUGUCCCC	chr17:80129476-80129745(-)$1	269	189	205	9.5737
UAAAAAUAUAUUUUAG	chr17:35993216-35993478(-)$1	262	14	30	10.1253
UGUGAGUGUAUUAUAU	chr14:51401724-51401982(-)$1	258	169	185	10.6422
CCGGGCCUUUCUUUGA	chr3:101292941-101293208(+)$1	267	221	237	10.4302
AGUGUGGAGAGCUUGC	chr6:91256930-91257201(-)$1	271	137	153	9.5737
GUCUCUGUCUGAGGCU	chrX:53610475-53610727(-)$1	252	28	44	9.6567
CCUGGAAAACCCAGGC	chr12:103310748-103310977(-)$1	229	83	99	10.4349
GGCAGUUCCUUUGCCA	chr13:113478596-113478843(+)$1	247	229	245	9.8283
AGUCCGGAGAGGAGUU	chr4:3533835-3534059(-)$1	224	65	81	10.5268
CUGGCUUUGUGUCUCU	chr2:135891412-135891668(+)$1	256	69	85	10.0412
CAGCAUCUUUUGCAUG	chr18:10752559-10752828(-)$1	269	41	57	10.5821
AGGAGGUAUGUUCCUG	chr16:2810287-2810556(+)$1	269	208	224	9.8377
UGGUGUCGUCCAUCAC	chr9:71862912-71863164(+)$1	252	181	197	10.6422
CUGUCUGUCUGACUCU	chr9:130119397-130119739(+)$1	342	105	121	10.6169
GGGCUGAGUUGGACUU	chr12:56211349-56211594(-)$1	245	163	179	10.0339
GAAUGGUCUGUAUUCC	chr2:10942526-10942771(-)$1	245	36	52	10.4349
AAAACUUCAUGUGUCU	chr10:79800296-79800504(+)$1	208	150	166	9.9239
UACUGGACUUCAGUGC	chr15:57212076-57212286(+)$1	210	93	109	10.6422
CUGCAAAAUGUGCAGG	chr11:71195264-71195585(+)$1	321	214	230	10.5719
UCUUCAAAUAGAGGAA	chr17:38787764-38788046(-)$1	282	121	137	9.8283
UGAGGUAGUCCCUGAC	chr1:43852425-43852657(-)$1	232	23	39	10.7181
ACGCCGAGAUGGAGUU	chr22:29999916-30000220(+)$1	304	159	175	10.3452
AUCCGUAUGCUGGAUG	chr9:35724727-35725019(-)$1	292	102	118	9.8377
UCCCAGAGAAUGGGAU	chr2:234750597-234750896(-)$1	299	103	119	10.2458
GCUGUCCCUUGCAGAU	chr17:76210660-76210901(+)$1	241	86	102	9.4989
GAUGAAGAGAUCAUUU	chr1:29314213-29314518(+)$1	305	102	118	9.8895
AGGACCCAGAGUCCUU	chr12:56749866-56750110(-)$1	244	136	152	9.0987
UUGCAGUGUAUGGAAU	chr18:55276559-55276776(-)$1	217	144	160	9.9527
AAUGAACAUCUCGUUU	chr17:37673656-37673898(+)$1	242	167	183	10.7790
AGAACAAUCGGUGCUC	chr20:48273074-48273335(-)$1	261	152	168	9.6984
CACCCUCUGUGGGUGU	chr16:57790178-57790456(+)$1	278	169	185	9.7025
CGUAGAAUUCCUAGGU	chr2:32656021-32656255(+)$1	234	197	213	10.1869
AAGGUCAAAAAGCUUC	chr1:206632149-206632400(+)$1	251	89	105	9.3502
CUGAGCUCCCCUCUGA	chr12:132497939-132498196(+)$1	257	195	211	10.0412
CCAUGGUGAGUGUGGG	chr2:234344863-234345127(+)$1	264	219	235	10.2054
AUGAUAUUUGAUCAUG	chr4:76721723-76721999(+)$1	276	183	199	9.8283
GGAUGUAGUUUAUCUU	chr2:54882988-54883217(+)$1	229	151	167	9.8283
GCAGAAGACAUUUCCC	chr14:24032500-24032733(-)$1	233	127	143	10.7907
UCAAGCGCUUCUUGAG	chr2:27552004-27552241(-)$1	237	172	188	10.1014
GCUGCGGUAGGCGGCG	chr1:16973934-16974170(+)$1	236	136	152	10.1253
GGGACGCCUUGUCUUC	chr1:44137174-44137446(+)$1	272	125	141	10.1951
UGUGGGUCUGCCAGAG	chr5:176965840-176966162(-)$1	322	183	199	10.1869
GGUAUGUACAGUGCCA	chr12:121747462-121747764(-)$1	302	65	81	10.4408
UCCAGCAGGCCUAAUA	chr16:1735364-1735625(+)$1	261	139	155	9.8984
GGUUCCAAAUGAACCC	chr15:64426760-64427070(+)$1	310	285	301	10.5347
CUCAUAGAGAAUGCAG	chr18:11999045-11999289(+)$1	244	186	202	9.7374
GUGUUGAAGAAGGGCC	chrX:135593990-135594256(+)$1	266	108	124	9.1090
UGAAGUACCUCAUCAA	chr9:140685258-140685525(+)$1	267	123	139	9.6882
AGAGUGGGAAGCUUUG	chr7:65546723-65547004(+)$1	281	64	80	10.1951
AACUAGUAGAUGGUUU	chr2:219604743-219604985(+)$1	242	90	106	9.8283
AUGCAGCACUUGCUCA	chr3:8667828-8668099(-)$1	271	92	108	9.9892
GUGCUAAGCGAGGAGU	chr11:129939782-129940015(+)$1	233	26	42	9.7576
UGAAGAAAUGCUUCAA	chr14:35480692-35480940(+)$1	248	142	158	9.8283

#DB
(((((.....))))))	chrX:73500797-73501020(-)$1	1	56	72	10.1951
..(((.....))).))	chr17:66526006-66526228(+)$1	1	79	95	10.4230
(((((.....))))))	chr2:131116348-131116641(+)$1	1	144	160	9.8283
((.((.....)).)))	chr15:62302569-62302842(-)$1	1	8	24	9.6984
.(..(.....)..).)	chr17:40970136-40970458(-)$1	1	30	46	9.4620
((.((.....)).)).	chr1:171492341-171492594(+)$1	1	131	147	9.2006
(((((.....))))).	chr5:32390396-32390644(-)$1	1	203	219	10.6320
((.((.....))))).	chr17:74060066-74060353(-)$1	1	260	276	9.1663
..(((.....))))).	chr12:1192227-1192521(+)$1	1	183	199	10.2576
.((((.....)))).)	chr19:54649242-54649514(+)$1	1	44	60	9.4169
.((((.....)))).)	chr13:20216152-20216442(+)$1	1	85	101	9.4758
(((((.....))))).	chr12:53345264-53345529(+)$1	1	121	137	9.8377
(((((.....))))))	chr17:4790802-4791029(+)$1	1	22	38	9.8283
(((((.....))))))	chr19:39196583-39196822(+)$1	1	85	101	10.1253
((.((.....))))))	chr17:80129476-80129745(-)$1	1	189	205	9.5737
(((((.....))))))	chr17:35993216-35993478(-)$1	1	14	30	10.1253
(((((.....))))).	chr14:51401724-51401982(-)$1	1	169	185	10.6422
(.(((.....))).))	chr3:101292941-101293208(+)$1	1	221	237	10.4302
((.((.....))))))	chr6:91256930-91257201(-)$1	1	137	153	9.5737
(((((.....)))))(	chrX:53610475-53610727(-)$1	1	28	44	9.6567
(((((.....))))))	chr12:103310748-103310977(-)$1	1	83	99	10.4349
(((((.....))))))	chr13:113478596-113478843(+)$1	1	229	245	9.8283
(.(((.....))).).	chr4:3533835-3534059(-)$1	1	65	81	10.5268
..(((.....)))..)	chr2:135891412-135891668(+)$1	1	69	85	10.0412
(.(((.....)))...	chr18:10752559-10752828(-)$1	1	41	57	10.5821
(((((.....))))).	chr16:2810287-2810556(+)$1	1	208	224	9.8377
(((((.....))))).	chr9:71862912-71863164(+)$1	1	181	197	10.6422
..(((.....))))))	chr9:130119397-130119739(+)$1	1	105	121	10.6169
(((((.....)).)))	chr12:56211349-56211594(-)$1	1	163	179	10.0339
(((((.....))))))	chr2:10942526-10942771(-)$1	1	36	52	10.4349
...((.....))...)	chr10:79800296-79800504(+)$1	1	150	166	9.9239
(((((.....))))).	chr15:57212076-57212286(+)$1	1	93	109	10.6422
(((((.....)))))(	chr11:71195264-71195585(+)$1	1	214	230	10.5719
(((((.....))))))	chr17:38787764-38788046(-)$1	1	121	137	9.8283
(.(((.....))).).	chr1:43852425-43852657(-)$1	1	23	39	10.7181
((.((.....)).)))	chr22:29999916-30000220(+)$1	1	159	175	10.3452
(((((.....))))).	chr9:35724727-35725019(-)$1	1	102	118	9.8377
(((((.....))))).	chr2:234750597-234750896(-)$1	1	103	119	10.2458
.((((.....))))))	chr17:76210660-76210901(+)$1	1	86	102	9.4989
(((((.....))))).	chr1:29314213-29314518(+)$1	1	102	118	9.8895
(((((.....)))).)	chr12:56749866-56750110(-)$1	1	136	152	9.0987
((.((.....)).)))	chr18:55276559-55276776(-)$1	1	144	160	9.9527
(.(((.....))))))	chr17:37673656-37673898(+)$1	1	167	183	10.7790
((.((.....)).)))	chr20:48273074-48273335(-)$1	1	152	168	9.6984
(((((.....))))))	chr16:57790178-57790456(+)$1	1	169	185	9.7025
(.(((.....))).))	chr2:32656021-32656255(+)$1	1	197	213	10.1869
(((.(.....).))))	chr1:206632149-206632400(+)$1	1	89	105	9.3502
..(((.....)))..)	chr12:132497939-132498196(+)$1	1	195	211	10.0412
(((((.....))).))	chr2:234344863-234345127(+)$1	1	219	235	10.2054
(((((.....))))))	chr4:76721723-76721999(+)$1	1	183	199	9.8283
(((((.....))))))	chr2:54882988-54883217(+)$1	1	151	167	9.8283
(.(((.....))).))	chr14:24032500-24032733(-)$1	1	127	143	10.7907
(((((.....))))).	chr2:27552004-27552241(-)$1	1	172	188	10.1014
(((((.....))))))	chr1:16973934-16974170(+)$1	1	136	152	10.1253
(((((.....))))))	chr1:44137174-44137446(+)$1	1	125	141	10.1951
(.(((.....))).))	chr5:176965840-176966162(-)$1	1	183	199	10.1869
(((((.....))))).	chr12:121747462-121747764(-)$1	1	65	81	10.4408
...((.....))...)	chr16:1735364-1735625(+)$1	1	139	155	9.8984
(((((.....))))))	chr15:64426760-64427070(+)$1	1	285	301	10.5347
(((((.....))).))	chr18:11999045-11999289(+)$1	1	186	202	9.7374
((.((.....)).)))	chrX:135593990-135594256(+)$1	1	108	124	9.1090
(((.(.....).))).	chr9:140685258-140685525(+)$1	1	123	139	9.6882
(((((.....))))))	chr7:65546723-65547004(+)$1	1	64	80	10.1951
(((((.....))))))	chr2:219604743-219604985(+)$1	1	90	106	9.8283
(.(((.....))))).	chr3:8667828-8668099(-)$1	1	92	108	9.9892
.(.((.....)).)..	chr11:129939782-129940015(+)$1	1	26	42	9.7576
(((((.....))))))	chr14:35480692-35480940(+)$1	1	142	158	9.8283

#PSSM
e : 0.29	f : 0.13	d : 0.10	b : 0.10	g : 0.05	" : 0.05	! : 0.04	[ : 0.04	c : 0.04	i : 0.04	a : 0.02	# : 0.02	
e : 0.26	d : 0.14	f : 0.13	[ : 0.13	g : 0.05	b : 0.04	i : 0.04	" : 0.04	! : 0.02	a : 0.02	c : 0.02	# : 0.02	
c : 0.25	e : 0.25	[ : 0.14	f : 0.11	d : 0.07	g : 0.05	i : 0.04	" : 0.02	! : 0.01	
e : 0.25	c : 0.23	b : 0.19	f : 0.11	d : 0.05	g : 0.04	i : 0.04	[ : 0.02	! : 0.01	
e : 0.25	c : 0.23	b : 0.19	f : 0.11	d : 0.05	g : 0.04	a : 0.04	i : 0.04	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
e : 0.25	c : 0.23	b : 0.19	f : 0.11	d : 0.05	g : 0.04	a : 0.04	i : 0.04	
e : 0.25	c : 0.23	b : 0.19	f : 0.11	d : 0.05	g : 0.04	i : 0.04	] : 0.02	2 : 0.01	
c : 0.26	e : 0.25	f : 0.11	] : 0.11	d : 0.10	g : 0.04	i : 0.04	3 : 0.02	2 : 0.01	
e : 0.29	] : 0.13	f : 0.13	d : 0.13	g : 0.05	b : 0.05	i : 0.04	a : 0.02	c : 0.02	2 : 0.02	3 : 0.02	4 : 0.01	
e : 0.32	f : 0.13	b : 0.11	d : 0.10	g : 0.05	] : 0.05	i : 0.04	2 : 0.04	c : 0.02	a : 0.02	3 : 0.02	4 : 0.01	
f : 0.19	d : 0.11	b : 0.10	e : 0.08	] : 0.07	g : 0.05	: : 0.05	2 : 0.05	c : 0.04	4 : 0.04	i : 0.04	3 : 0.01	C : 0.01	= : 0.01	6 : 0.01	5 : 0.01	E : 0.01	9 : 0.01	

#score	671.1109608000436
#seq	67
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_UTR_m3_run1.txt

#BEAR
:eeeeeooooooeeeee	chr11:122929530-122929741(-)$1	211	176	193	12.0201
gggeeeeemmmmeeeee	chr3:10362532-10362784(-)$1	252	180	197	9.5915
ccc[eeeeellleeeee	chr1:228285804-228286039(+)$1	235	14	31	9.7684
FFFeeeeemmmmeeeee	chr11:122929979-122930223(-)$1	244	5	22	8.9065
eee[bboooooobbeee	chr1:63833241-63833466(+)$1	225	206	223	9.0226
:eeeeeooooooeeeee	chr11:122929515-122929718(-)$1	203	153	170	12.0201
c"""eeeeellleeeee	chr19:8550833-8551095(+)$1	262	159	176	9.6300
:eeeeeooooooeeeee	chr16:447647-447876(+)$1	229	143	160	12.0201
[eeeeeooooooeeeee	chr19:8550671-8550944(+)$1	273	52	69	12.2830

#otherMatches

#Seq PSSM
UAGUAAUUUGUUUUAUU	chr11:122929530-122929741(-)$1	211	176	193	12.0201
UGGGGGGCUCUGGCCCC	chr3:10362532-10362784(-)$1	252	180	197	9.5915
CACCGUGUGCAUCGCAC	chr1:228285804-228286039(+)$1	235	14	31	9.7684
GAGCAUCAACCCUGAUG	chr11:122929979-122930223(-)$1	244	5	22	8.9065
UGGCGACCCGUCUCCCA	chr1:63833241-63833466(+)$1	225	206	223	9.0226
UAGUAAUUUGUUUUAUU	chr11:122929515-122929718(-)$1	203	153	170	12.0201
AACAAUCUGGAGCGGAU	chr19:8550833-8551095(+)$1	262	159	176	9.6300
UCUGACUGGGACGUCAG	chr16:447647-447876(+)$1	229	143	160	12.0201
GCAUGGGCCAGACCAUG	chr19:8550671-8550944(+)$1	273	52	69	12.2830

#DB
.(((((......)))))	chr11:122929530-122929741(-)$1	1	176	193	12.0201
)))(((((....)))))	chr3:10362532-10362784(-)$1	1	180	197	9.5915
(((.(((((...)))))	chr1:228285804-228286039(+)$1	1	14	31	9.7684
((((((((....)))))	chr11:122929979-122930223(-)$1	1	5	22	8.9065
(((.((......)))))	chr1:63833241-63833466(+)$1	1	206	223	9.0226
.(((((......)))))	chr11:122929515-122929718(-)$1	1	153	170	12.0201
(...(((((...)))))	chr19:8550833-8551095(+)$1	1	159	176	9.6300
.(((((......)))))	chr16:447647-447876(+)$1	1	143	160	12.0201
.(((((......)))))	chr19:8550671-8550944(+)$1	1	52	69	12.2830

#PSSM
: : 0.33	c : 0.22	g : 0.11	F : 0.11	e : 0.11	[ : 0.11	
e : 0.55	g : 0.11	c : 0.11	F : 0.11	" : 0.11	
e : 0.55	g : 0.11	c : 0.11	F : 0.11	" : 0.11	
e : 0.66	[ : 0.22	" : 0.11	
e : 0.88	b : 0.11	
e : 0.88	b : 0.11	
o : 0.55	e : 0.44	
o : 0.55	e : 0.44	
o : 0.55	m : 0.22	e : 0.22	
o : 0.55	m : 0.22	l : 0.22	
o : 0.55	m : 0.22	l : 0.22	
o : 0.55	m : 0.22	l : 0.22	
e : 0.88	b : 0.11	
e : 0.88	b : 0.11	
e : 1.00	
e : 1.00	
e : 1.00	

#score	95.26278757290002
#seq	9
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242FDW_UPF1_transcript_m2_run2.txt

#BEAR
ggggggguuuuuuuuuuuuggggggg	chr19:19230425-19230707(-)$1	282	240	266	24.1294
iiiiiiivvvvvvvvvvvvviiiiii	chr16:31501600-31501902(-)$1	302	186	212	25.4993
""eeeeettttttttttteeeee333	chr20:2126858-2127113(+)$1	255	158	184	21.3999
f####cccuuuuuuuuuuuuccc]ff	chr6:42979347-42979624(+)$1	277	169	195	23.6659
ccc[cccuuuuuuuuuuuuccc]ccc	chr16:87866109-87866339(-)$1	230	191	217	23.9651
:ffffffvvvvvvvvvvvvvffffff	chr17:79780906-79781176(-)$1	270	215	241	23.3432
=======yyyyyyyyyyyyyyyy===	chr5:73923908-73924164(-)$1	256	155	181	21.3563
iiicccwwwwwwwwwwwwwwccc]ii	chr20:62271289-62271564(-)$1	275	126	152	23.9393
gggggggvvvvvvvvvvvvvgggggg	chr1:160967684-160967937(-)$1	253	34	60	25.6662
g!!eeeeeuuuuuuuuuuuueeeee2	chr14:24592831-24593127(+)$1	296	204	230	23.6469
h[eeeeeuuuuuuuuuuuueeeee]h	chr1:109855613-109855844(-)$1	231	184	210	23.1469
c"""ccctttttttttttccc]ccc]	chr8:22108250-22108491(+)$1	241	7	33	22.0869
gggggggwwwwwwwwwwwwwwggggg	chr20:33515343-33515654(+)$1	311	272	298	24.4456
=========ttttttttttt======	chr1:150547293-150547562(-)$1	269	236	262	22.6342
e[eeeeewwwwwwwwwwwwwweeeee	chr5:150409691-150409971(-)$1	280	197	223	23.4597
[ddddbbvvvvvvvvvvvvvbb]ddd	chr14:105476302-105476614(-)$1	312	102	128	23.0937
c!!ddddwwwwwwwwwwwwwwdddd2	chr17:74386049-74386313(-)$1	264	95	121	22.8041
dd:eeeeeuuuuuuuuuuuueeeee:	chr9:139958960-139959225(-)$1	265	93	119	21.1531
ii!!cccvvvvvvvvvvvvvccc22i	chrX:130418813-130419103(-)$1	290	12	38	25.1845
ffacccyyyyyyyyyyyyyyyyccc]	chr9:86583862-86584141(-)$1	279	198	224	20.7920
ffff!!avvvvvvvvvvvvva22fff	chr11:67022842-67023122(+)$1	280	220	246	24.1449
::gggggggtttttttttttgggggg	chr12:133298938-133299198(+)$1	260	233	259	20.5414
[ffffffwwwwwwwwwwwwwwfffff	chr11:61117419-61117725(-)$1	306	143	169	23.1591
dddd[bbvvvvvvvvvvvvvbb333d	chr2:71214075-71214370(-)$1	295	103	129	23.2884
gggggggvvvvvvvvvvvvvgggggg	chr1:182352371-182352597(-)$1	226	85	111	25.6662
ccc[cccuuuuuuuuuuuucccccce	chr22:41973064-41973392(-)$1	328	274	300	23.8662
eeeee[auuuuuuuuuuuua]eeeee	chr3:50257664-50257926(+)$1	262	24	50	23.6191
hhhhhhhhuuuuuuuuuuuuhhhhhh	chr17:73059287-73059549(+)$1	262	186	212	21.8785
gggggggwwwwwwwwwwwwwwggggg	chr11:69466845-69467114(+)$1	269	46	72	24.4456
gggggggwwwwwwwwwwwwwwggggg	chr10:88810922-88811243(-)$1	321	224	250	24.4456
gggggggwwwwwwwwwwwwwwggggg	chr5:115165659-115165922(-)$1	263	84	110	24.4456
====[cccuuuuuuuuuuuuccc]==	chr4:1718318-1718650(-)$1	332	11	37	24.5957
hhhheeeeettttttttttteeeee:	chr7:44841686-44841965(+)$1	279	219	245	20.4292
cceeeeevvvvvvvvvvvvveeeee:	chr2:130909740-130909989(-)$1	249	104	130	23.7585
bb[cccwwwwwwwwwwwwwwccc]bb	chr1:155106760-155106996(+)$1	236	164	190	22.7612
:ffffffvvvvvvvvvvvvvffffff	chr15:81241334-81241606(+)$1	272	182	208	23.3432
eeeee[ccctttttttttttccceee	chr17:44833308-44833624(+)$1	316	20	46	22.2439
ggggggguuuuuuuuuuuuggggggg	chr20:33515499-33515758(+)$1	259	140	166	24.1294
cc[eeeeeuuuuuuuuuuuueeeeec	chr1:27180363-27180630(+)$1	267	175	201	23.7357
::ffffffuuuuuuuuuuuuffffff	chr3:57557409-57557637(-)$1	228	20	46	21.1796
fffddddtttttttttttdddd]fff	chr19:1924484-1924815(+)$1	331	248	274	20.6376
cccddddwwwwwwwwwwwwwwdddd5	chr19:49426198-49426518(+)$1	320	224	250	21.8904
hhhhhhhhuuuuuuuuuuuuhhhhhh	chr16:29869852-29870117(-)$1	265	49	75	21.8785
eeee!!bbuuuuuuuuuuuubb22ee	chr20:307634-307879(+)$1	245	1	27	22.3900
ffffffwwwwwwwwwwwwwwffffff	chr1:226033804-226034104(-)$1	300	111	137	22.7320
a[a[cccvvvvvvvvvvvvvccc22a	chr19:56185505-56185782(+)$1	277	160	186	24.8901
gggggggwwwwwwwwwwwwwwggggg	chr12:51325288-51325497(+)$1	209	143	169	24.4456
hhhhhhhvvvvvvvvvvvvvhhhhhh	chr20:24944256-24944573(-)$1	317	203	229	23.3858
fffff[auuuuuuuuuuuua]fffff	chr10:74035473-74035781(+)$1	308	220	246	23.4839
::ddddwwwwwwwwwwwwwwddddff	chr14:75202838-75203078(+)$1	240	107	133	20.4240
e[bb[ccctttttttttttccc]bb]	chr16:70696982-70697253(-)$1	271	4	30	21.7426
eeeecccbbtttttttttttbb]ccc	chr1:9325806-9326096(+)$1	290	152	178	21.3679
"""ddddyyyyyyyyyyyyyyyyddd	chr19:47112483-47112774(+)$1	291	87	113	19.9145
iiiiiiivvvvvvvvvvvvviiiiii	chr9:130648437-130648714(-)$1	277	235	261	25.4993
ccc[eeeeettttttttttteeeeec	chr22:43266668-43266931(-)$1	263	209	235	21.9449
bb[ddddvvvvvvvvvvvvvdddd]b	chr7:2702648-2702887(+)$1	239	19	45	23.4810
+fffffftttttttttttffffff]d	chr16:68293851-68294124(+)$1	273	40	66	20.2552
cc[eeeeeuuuuuuuuuuuueeeee3	chr17:46024483-46024733(+)$1	250	117	143	23.7707
gggggggwwwwwwwwwwwwwwggggg	chr12:123346509-123346796(+)$1	287	67	93	24.4456
dd!!cccvvvvvvvvvvvvvccc22d	chr17:37884410-37884738(+)$1	328	246	272	24.4859

#otherMatches

#Seq PSSM
UGCUCUUCUGAACAAAUAAAGGAGCA	chr19:19230425-19230707(-)$1	282	240	266	24.1294
GCGGAGGACUGCCCACCCCACCUCUG	chr16:31501600-31501902(-)$1	302	186	212	25.4993
UCUGGUGCAUCGUCUCAACACCACCA	chr20:2126858-2127113(+)$1	255	158	184	21.3999
AAAUAGGCCCCCCAGUCCCAGCCGUG	chr6:42979347-42979624(+)$1	277	169	195	23.6659
UCAUUGCUACCACAGACUUGCACUGA	chr16:87866109-87866339(-)$1	230	191	217	23.9651
AGCCCCCUUCCUUCAUCCUUGGGGGU	chr17:79780906-79781176(-)$1	270	215	241	23.3432
UUGGAAGAAAAGAAUCACAGUACUUU	chr5:73923908-73924164(-)$1	256	155	181	21.3563
GCCCUCAACUUCCAUCCUGCGGGAGG	chr20:62271289-62271564(-)$1	275	126	152	23.9393
ggucaggaguucaagaucagccugac	chr1:160967684-160967937(-)$1	253	34	60	25.6662
CUGGGUCUUUAGGGUAGGACAGGCUG	chr14:24592831-24593127(+)$1	296	204	230	23.6469
CUGCCUAUCUGCUGCUUCUUAGGUUG	chr1:109855613-109855844(-)$1	231	184	210	23.1469
GCCCUGCUAUUUAUUUUUGUAUUUAU	chr8:22108250-22108491(+)$1	241	7	33	22.0869
CAGAGGAGCUUGUCUUCCUUGUCCUC	chr20:33515343-33515654(+)$1	311	272	298	24.4456
AAAUCCUCCAAAAGGGAAAGGGAGGA	chr1:150547293-150547562(-)$1	269	236	262	22.6342
AACAGAAGAGAAUGAUGGAUAUUCUG	chr5:150409691-150409971(-)$1	280	197	223	23.4597
UCAUUCAUAACCCCUUGAUCUGUAGU	chr14:105476302-105476614(-)$1	312	102	128	23.0937
UCCCCCAUCACAUGGUCACACUGGGA	chr17:74386049-74386313(-)$1	264	95	121	22.8041
UCUGGAUUCCACCUUCAUCUAGUCCU	chr9:139958960-139959225(-)$1	265	93	119	21.1531
AGCUAGGGUUUCUGAUUUUACUUUCC	chrX:130418813-130419103(-)$1	290	12	38	25.1845
CAGGGAGGAAAAGUAACAAUAGUCCA	chr9:86583862-86584141(-)$1	279	198	224	20.7920
UGAGAUCUCCCAAACCUCACGUCCUU	chr11:67022842-67023122(+)$1	280	220	246	24.1449
UAUGCUGUUAAUUUAGGAAAAACAGU	chr12:133298938-133299198(+)$1	260	233	259	20.5414
ugcugccugucugcuuuccuUGGUGG	chr11:61117419-61117725(-)$1	306	143	169	23.1591
CAGCUGGCCCUAcuuuccucccucug	chr2:71214075-71214370(-)$1	295	103	129	23.2884
CAGAGGGGGUAUUGGGGUUAUUUUCU	chr1:182352371-182352597(-)$1	226	85	111	25.6662
CAGAGUGUUCCCCAUGCUCCACCUGG	chr22:41973064-41973392(-)$1	328	274	300	23.8662
AGUCGGGGGAGGAGAAAGACGCGAUU	chr3:50257664-50257926(+)$1	262	24	50	23.6191
UCCUUGGAAAUGGCCUGUACUUUAAG	chr17:73059287-73059549(+)$1	262	186	212	21.8785
GAAAUAGUGACAUAAUAUAUUCUAUU	chr11:69466845-69467114(+)$1	269	46	72	24.4456
GCAGGUUGCAAACAAAUAUAAAACCU	chr10:88810922-88811243(-)$1	321	224	250	24.4456
uuuuuuuuuuuuuuuuuuuuuaaaga	chr5:115165659-115165922(-)$1	263	84	110	24.4456
AGAUCCUGCACACACAGACACAGCGU	chr4:1718318-1718650(-)$1	332	11	37	24.5957
cccagcuaauuuuuguauuuuuagua	chr7:44841686-44841965(+)$1	279	219	245	20.4292
GCGGCGGCCUUUCCCUCCCUCCGCCA	chr2:130909740-130909989(-)$1	249	104	130	23.7585
AGCCAGGAUGCCCAGAUGAACUGACU	chr1:155106760-155106996(+)$1	236	164	190	22.7612
UGGGUGCUUCUCUCCUAUCUGUGCCU	chr15:81241334-81241606(+)$1	272	182	208	23.3432
GUGCAAUAAAACUCCCUUCCUUAUGC	chr17:44833308-44833624(+)$1	316	20	46	22.2439
UCUGUUCCCACCCUCCCCUGAACAGA	chr20:33515499-33515758(+)$1	259	140	166	24.1294
CUAGGUACCCCAGCUGAUCAGUGCCA	chr1:27180363-27180630(+)$1	267	175	201	23.7357
UUUAAAGUUAUCCCCUUGCUACUUUA	chr3:57557409-57557637(-)$1	228	20	46	21.1796
GCCCUUGGCCGGAACUAAUAAGAGGC	chr19:1924484-1924815(+)$1	331	248	274	20.6376
AGACCAGUCCCACCCACCUUUCUGGC	chr19:49426198-49426518(+)$1	320	224	250	21.8904
GUCCUGCCUACCCUGGUCCUGGCGGG	chr16:29869852-29870117(-)$1	265	49	75	21.8785
UGGACGUGCCCAUCCCCCCUCAGAUC	chr20:307634-307879(+)$1	245	1	27	22.3900
CAGCCUCUCUCACCUCUUCAGGGCUG	chr1:226033804-226034104(-)$1	300	111	137	22.7320
CGCACCCACACAGACACAGAGGGAAG	chr19:56185505-56185782(+)$1	277	160	186	24.8901
ugcagugaaccgagaucaugccauug	chr12:51325288-51325497(+)$1	209	143	169	24.4456
UGGACACAGUCGUGGUUCAAGUGUCC	chr20:24944256-24944573(-)$1	317	203	229	23.3858
AUGAAGAUAAGAUACUCACUGUUCAU	chr10:74035473-74035781(+)$1	308	220	246	23.4839
uacuaaaaauacaaaaaaaauuagcu	chr14:75202838-75203078(+)$1	240	107	133	20.4240
CAGGCUGGCCUCCCUUUCACCAUCCC	chr16:70696982-70697253(-)$1	271	4	30	21.7426
CUCCGCUGCUCCUCUGUCCUGCUAGC	chr1:9325806-9326096(+)$1	290	152	178	21.3679
AUUGCUCUUUCUCCUUCUUCCCUGAG	chr19:47112483-47112774(+)$1	291	87	113	19.9145
GGUGUUGCCCCCUCAAUUUCCAGCAC	chr9:130648437-130648714(-)$1	277	235	261	25.4993
GGAAUGCUCUUUGUGCUUUUGGGCAU	chr22:43266668-43266931(-)$1	263	209	235	21.9449
AUGGUGCUUUUGGCUUUAGUGUACGA	chr7:2702648-2702887(+)$1	239	19	45	23.4810
UGUGGGCUUUUCAUACUUGCCUACUG	chr16:68293851-68294124(+)$1	273	40	66	20.2552
AACCUUGGGAGUCAUUAAAGCCAAGU	chr17:46024483-46024733(+)$1	250	117	143	23.7707
UGUUUUUAAUAUUCCUCUUCAGAAAA	chr12:123346509-123346796(+)$1	287	67	93	24.4456
CUAAGAACAAAAGCGACCCAUUCAGA	chr17:37884410-37884738(+)$1	328	246	272	24.4859

#DB
(((((((............)))))))	chr19:19230425-19230707(-)$1	1	240	266	24.1294
(((((((.............))))))	chr16:31501600-31501902(-)$1	1	186	212	25.4993
..(((((...........)))))...	chr20:2126858-2127113(+)$1	1	158	184	21.3999
(....(((............))).))	chr6:42979347-42979624(+)$1	1	169	195	23.6659
(((.(((............))).)))	chr16:87866109-87866339(-)$1	1	191	217	23.9651
.((((((.............))))))	chr17:79780906-79781176(-)$1	1	215	241	23.3432
(((((((................)))	chr5:73923908-73924164(-)$1	1	155	181	21.3563
((((((..............))).))	chr20:62271289-62271564(-)$1	1	126	152	23.9393
(((((((.............))))))	chr1:160967684-160967937(-)$1	1	34	60	25.6662
(..(((((............))))).	chr14:24592831-24593127(+)$1	1	204	230	23.6469
(.(((((............))))).)	chr1:109855613-109855844(-)$1	1	184	210	23.1469
(...(((...........))).))).	chr8:22108250-22108491(+)$1	1	7	33	22.0869
(((((((..............)))))	chr20:33515343-33515654(+)$1	1	272	298	24.4456
(((((((((...........))))))	chr1:150547293-150547562(-)$1	1	236	262	22.6342
(.(((((..............)))))	chr5:150409691-150409971(-)$1	1	197	223	23.4597
.((((((.............)).)))	chr14:105476302-105476614(-)$1	1	102	128	23.0937
(..((((..............)))).	chr17:74386049-74386313(-)$1	1	95	121	22.8041
)).(((((............))))).	chr9:139958960-139959225(-)$1	1	93	119	21.1531
((..(((.............)))..)	chrX:130418813-130419103(-)$1	1	12	38	25.1845
((((((................))).	chr9:86583862-86584141(-)$1	1	198	224	20.7920
((((..(.............)..)))	chr11:67022842-67023122(+)$1	1	220	246	24.1449
..(((((((...........))))))	chr12:133298938-133299198(+)$1	1	233	259	20.5414
.((((((..............)))))	chr11:61117419-61117725(-)$1	1	143	169	23.1591
((((.((.............))...)	chr2:71214075-71214370(-)$1	1	103	129	23.2884
(((((((.............))))))	chr1:182352371-182352597(-)$1	1	85	111	25.6662
(((.(((............))))))(	chr22:41973064-41973392(-)$1	1	274	300	23.8662
(((((.(............).)))))	chr3:50257664-50257926(+)$1	1	24	50	23.6191
((((((((............))))))	chr17:73059287-73059549(+)$1	1	186	212	21.8785
(((((((..............)))))	chr11:69466845-69467114(+)$1	1	46	72	24.4456
(((((((..............)))))	chr10:88810922-88811243(-)$1	1	224	250	24.4456
(((((((..............)))))	chr5:115165659-115165922(-)$1	1	84	110	24.4456
((((.(((............))).))	chr4:1718318-1718650(-)$1	1	11	37	24.5957
))))(((((...........))))).	chr7:44841686-44841965(+)$1	1	219	245	20.4292
))(((((.............))))).	chr2:130909740-130909989(-)$1	1	104	130	23.7585
((.(((..............))).))	chr1:155106760-155106996(+)$1	1	164	190	22.7612
.((((((.............))))))	chr15:81241334-81241606(+)$1	1	182	208	23.3432
(((((.(((...........))))))	chr17:44833308-44833624(+)$1	1	20	46	22.2439
(((((((............)))))))	chr20:33515499-33515758(+)$1	1	140	166	24.1294
((.(((((............))))))	chr1:27180363-27180630(+)$1	1	175	201	23.7357
..((((((............))))))	chr3:57557409-57557637(-)$1	1	20	46	21.1796
(((((((...........)))).)))	chr19:1924484-1924815(+)$1	1	248	274	20.6376
(((((((..............)))).	chr19:49426198-49426518(+)$1	1	224	250	21.8904
((((((((............))))))	chr16:29869852-29870117(-)$1	1	49	75	21.8785
((((..((............))..))	chr20:307634-307879(+)$1	1	1	27	22.3900
((((((..............))))))	chr1:226033804-226034104(-)$1	1	111	137	22.7320
(.(.(((.............)))..)	chr19:56185505-56185782(+)$1	1	160	186	24.8901
(((((((..............)))))	chr12:51325288-51325497(+)$1	1	143	169	24.4456
(((((((.............))))))	chr20:24944256-24944573(-)$1	1	203	229	23.3858
(((((.(............).)))))	chr10:74035473-74035781(+)$1	1	220	246	23.4839
..((((..............))))((	chr14:75202838-75203078(+)$1	1	107	133	20.4240
(.((.(((...........))).)).	chr16:70696982-70697253(-)$1	1	4	30	21.7426
))))(((((...........)).)))	chr1:9325806-9326096(+)$1	1	152	178	21.3679
...((((................)))	chr19:47112483-47112774(+)$1	1	87	113	19.9145
(((((((.............))))))	chr9:130648437-130648714(-)$1	1	235	261	25.4993
(((.(((((...........))))))	chr22:43266668-43266931(-)$1	1	209	235	21.9449
((.((((.............)))).)	chr7:2702648-2702887(+)$1	1	19	45	23.4810
.((((((...........)))))).)	chr16:68293851-68294124(+)$1	1	40	66	20.2552
((.(((((............))))).	chr17:46024483-46024733(+)$1	1	117	143	23.7707
(((((((..............)))))	chr12:123346509-123346796(+)$1	1	67	93	24.4456
((..(((.............)))..)	chr17:37884410-37884738(+)$1	1	246	272	24.4859

#PSSM
g : 0.18	c : 0.15	f : 0.09	e : 0.09	: : 0.08	h : 0.08	i : 0.06	= : 0.05	d : 0.05	" : 0.03	[ : 0.03	b : 0.03	a : 0.01	+ : 0.01	
g : 0.16	f : 0.15	c : 0.11	i : 0.06	[ : 0.06	d : 0.06	e : 0.06	h : 0.06	" : 0.05	= : 0.05	: : 0.05	! : 0.03	b : 0.03	# : 0.01	
g : 0.18	f : 0.15	e : 0.13	c : 0.06	! : 0.06	h : 0.06	[ : 0.06	i : 0.05	= : 0.05	d : 0.05	" : 0.03	a : 0.03	# : 0.01	: : 0.01	b : 0.01	
e : 0.19	g : 0.18	f : 0.13	d : 0.13	[ : 0.06	h : 0.06	= : 0.05	c : 0.05	i : 0.03	! : 0.03	# : 0.01	" : 0.01	b : 0.01	
e : 0.19	g : 0.18	c : 0.16	f : 0.11	d : 0.11	[ : 0.05	h : 0.05	i : 0.03	= : 0.03	! : 0.03	# : 0.01	
c : 0.21	g : 0.18	e : 0.16	f : 0.09	d : 0.09	[ : 0.05	h : 0.05	i : 0.03	= : 0.03	b : 0.03	! : 0.03	
g : 0.18	c : 0.18	e : 0.16	f : 0.08	d : 0.08	w : 0.06	b : 0.05	a : 0.05	h : 0.05	i : 0.03	= : 0.03	y : 0.01	
v : 0.24	w : 0.23	u : 0.11	e : 0.09	t : 0.06	c : 0.06	y : 0.05	h : 0.03	b : 0.03	= : 0.01	g : 0.01	f : 0.01	
u : 0.28	v : 0.24	w : 0.23	t : 0.08	y : 0.05	e : 0.03	= : 0.01	g : 0.01	c : 0.01	b : 0.01	
u : 0.28	v : 0.24	w : 0.23	t : 0.18	y : 0.05	
u : 0.28	v : 0.24	w : 0.23	t : 0.18	y : 0.05	
u : 0.28	v : 0.24	w : 0.23	t : 0.18	y : 0.05	
u : 0.28	v : 0.24	w : 0.23	t : 0.18	y : 0.05	
u : 0.28	v : 0.24	w : 0.23	t : 0.18	y : 0.05	
u : 0.28	v : 0.24	w : 0.23	t : 0.18	y : 0.05	
u : 0.28	v : 0.24	w : 0.23	t : 0.18	y : 0.05	
u : 0.28	v : 0.24	w : 0.23	t : 0.18	y : 0.05	
u : 0.28	v : 0.24	w : 0.23	t : 0.18	y : 0.05	
u : 0.28	v : 0.24	w : 0.23	t : 0.11	y : 0.05	e : 0.01	c : 0.01	d : 0.01	f : 0.01	
v : 0.24	w : 0.23	u : 0.16	t : 0.09	c : 0.06	y : 0.05	g : 0.03	e : 0.03	a : 0.03	d : 0.01	f : 0.01	
c : 0.19	w : 0.16	e : 0.15	g : 0.08	f : 0.08	b : 0.06	y : 0.05	h : 0.05	d : 0.05	i : 0.03	] : 0.03	= : 0.01	a : 0.01	
g : 0.18	e : 0.18	c : 0.18	f : 0.11	d : 0.08	b : 0.06	y : 0.05	h : 0.05	i : 0.03	] : 0.01	= : 0.01	2 : 0.01	
g : 0.18	e : 0.18	c : 0.18	f : 0.11	] : 0.08	d : 0.06	h : 0.05	i : 0.03	y : 0.03	2 : 0.03	= : 0.01	3 : 0.01	
g : 0.18	e : 0.18	f : 0.15	d : 0.09	c : 0.08	] : 0.06	2 : 0.06	h : 0.05	i : 0.03	3 : 0.03	= : 0.03	b : 0.01	
g : 0.18	e : 0.18	f : 0.16	c : 0.08	d : 0.06	i : 0.05	= : 0.05	] : 0.05	2 : 0.05	h : 0.05	3 : 0.03	b : 0.03	
g : 0.18	f : 0.16	e : 0.08	d : 0.08	i : 0.06	c : 0.06	h : 0.06	= : 0.05	] : 0.05	: : 0.05	3 : 0.03	2 : 0.03	b : 0.03	5 : 0.01	a : 0.01	

#score	1384.1576067698318
#seq	60
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_CDS_m3_run1.txt

#BEAR
eee[apppppppa]ee	chrM:14253-14459(-)$1	206	93	109	13.7496
eee[apppppppa]ee	chrM:14191-14399(-)$1	208	33	49	13.7496
ddd[apppppppaddd	chr2:216248669-216248910(-)$1	241	1	17	13.7357
:ddddpppppppdddd	chrM:15064-15278(+)$1	214	43	59	12.8635
d[cccpppppppccc]	chrM:6827-7032(+)$1	205	174	190	13.3002
d[cccpppppppccc]	chrM:6832-7052(+)$1	220	169	185	13.3002
##cccpppppppccc4	chrM:12724-12939(+)$1	215	99	115	13.2523
##cccpppppppccc5	chr1:1155984-1156227(-)$1	243	63	79	12.4459
##cccpppppppccc4	chrM:12654-12862(+)$1	208	169	185	13.2523
eeeeepppppppeeee	chr2:216272966-216273193(-)$1	227	28	44	13.5769
eeeeepppppppeeee	chrM:3256-3477(+)$1	221	24	40	13.5769
:ddddpppppppdddd	chr17:38153988-38154257(+)$1	269	249	265	12.8635
eeeeepppppppeeee	chr4:74283234-74283480(+)$1	246	221	237	13.5769
eeeeepppppppeeee	chrM:8086-8294(+)$1	208	190	206	13.5769
eeerrrrrrrrreeee	chr8:9629756-9630018(+)$1	262	209	225	9.8325
cddddpppppppdddd	chr3:133497329-133497587(+)$1	258	112	128	13.6542
eeeeepppppppeeee	chr19:18530345-18530622(+)$1	277	227	243	13.5769
ddddrrrrrrrrrddd	chrM:15041-15257(+)$1	216	64	80	10.0265
hddddpppppppdddd	chr12:123997756-123998008(-)$1	252	119	135	13.4516
gggggpppppppgggg	chr1:229693930-229694232(-)$1	302	74	90	12.5397
##cccpppppppccc4	chrM:12701-12924(+)$1	223	122	138	13.2523
hhcccpppppppccc]	chr22:19711744-19712005(+)$1	261	49	65	12.8365
dd[bbpppppppbb22	chr17:34171767-34172045(+)$1	278	98	114	11.1320
ddcccpppppppccc:	chrM:14922-15152(+)$1	230	185	201	12.4029
+ddddpppppppdddd	chrM:9307-9540(+)$1	233	166	182	13.1378
:ddddpppppppdddd	chr3:133476588-133476891(+)$1	303	50	66	12.8635
!ddddpppppppdddd	chr3:133473288-133473618(+)$1	330	161	177	13.8031
dddddpppppppdddd	chr1:230838864-230839139(-)$1	275	31	47	13.6765
eeeeepppppppeeee	chr6:31760725-31760998(-)$1	273	56	72	13.5769
fffffpppppppffff	chr1:2126017-2126311(-)$1	294	144	160	11.7694
##cccpppppppccc4	chrM:12757-12999(+)$1	242	66	82	13.2523
gggggpppppppgggg	chrM:14362-14573(-)$1	211	149	165	12.5397
eeeeepppppppeeee	chrM:8094-8317(+)$1	223	182	198	13.5769
===[apppppppa]==	chr8:145149927-145150237(+)$1	310	102	118	13.1303
eee[apppppppa]ee	chrM:14157-14378(-)$1	221	12	28	13.7496
iiiiipppppppiiii	chrM:6537-6773(+)$1	236	23	39	12.6026
eeeeepppppppeeee	chr19:2270510-2270783(+)$1	273	199	215	13.5769
[ddddpppppppdddd	chr3:133474135-133474436(+)$1	301	183	199	13.7610
eeeeepppppppeeee	chr2:11484091-11484339(-)$1	248	219	235	13.5769
ddddrrrrrrrrrddd	chrM:15026-15241(+)$1	215	79	95	10.0265
eee[apppppppa]ee	chrM:14290-14500(-)$1	210	134	150	13.7496
eeeeepppppppeeee	chr3:13418913-13419165(-)$1	252	80	96	13.5769
d[cccpppppppccc]	chrM:6818-7027(+)$1	209	183	199	13.3002
cddddpppppppdddd	chr22:21983237-21983519(-)$1	282	63	79	13.6542
[ddddpppppppdddd	chr11:111896272-111896536(+)$1	264	107	123	13.7610
ffcccrrrrrrrrrcc	chr2:216274294-216274518(-)$1	224	129	145	9.1224
##cccpppppppccc4	chrM:12684-12901(+)$1	217	139	155	13.2523
eecccrrrrrrrrrcc	chr14:94849282-94849530(-)$1	248	78	94	9.6326
a[cccpppppppccc]	chr22:50018090-50018335(-)$1	245	110	126	13.3056
ddddrrrrrrrrrddd	chr2:21228768-21229014(-)$1	246	171	187	10.0265
eee[apppppppa]ee	chrM:14259-14470(-)$1	211	104	120	13.7496
$cccrrrrrrrrrccc	chr1:231557523-231557809(-)$1	286	60	76	9.3242
[cccapppppppa]cc	chr21:45941872-45942121(+)$1	249	97	113	13.3128
eee[apppppppa]ee	chrM:14184-14391(-)$1	207	25	41	13.7496
ddddapppppppa]dd	chr11:64013976-64014219(-)$1	243	135	151	13.7196
:ddddpppppppdddd	chrM:12501-12713(+)$1	212	58	74	12.8635
cddddpppppppdddd	chrM:15085-15306(+)$1	221	22	38	13.6542
eeerrrrrrrrreeee	chr4:74275052-74275304(+)$1	252	40	56	9.8325
Gddddpppppppdddd	chrM:9398-9641(+)$1	243	218	234	13.1521
:ddddpppppppdddd	chr2:216279513-216279767(-)$1	254	125	141	12.8635
eeeeepppppppeeee	chrM:3219-3456(+)$1	237	61	77	13.5769
fffffpppppppffff	chr19:50985390-50985643(+)$1	253	3	19	11.7694

#otherMatches

#Seq PSSM
GCUGUGGGUGAAAGAG	chrM:14253-14459(-)$1	206	93	109	13.7496
GCUGUGGGUGAAAGAG	chrM:14191-14399(-)$1	208	33	49	13.7496
AGGAGGAAAUAGCCCU	chr2:216248669-216248910(-)$1	241	1	17	13.7357
CUUGCAACUAUAGCAA	chrM:15064-15278(+)$1	214	43	59	12.8635
ACUACACGACACGUAC	chrM:6827-7032(+)$1	205	174	190	13.3002
ACUACACGACACGUAC	chrM:6832-7052(+)$1	220	169	185	13.3002
GAUGCCAACACAGCAG	chrM:12724-12939(+)$1	215	99	115	13.2523
CUGAUUGUGUCUGUCU	chr1:1155984-1156227(-)$1	243	63	79	12.4459
GAUGCCAACACAGCAG	chrM:12654-12862(+)$1	208	169	185	13.2523
UCUUUUCAUUUCAAAG	chr2:216272966-216273193(-)$1	227	28	44	13.5769
agagguucaauuccuc	chrM:3256-3477(+)$1	221	24	40	13.5769
ACUGCAGUAUUGGCAG	chr17:38153988-38154257(+)$1	269	249	265	12.8635
CUUUCAUAAGCAGAAG	chr4:74283234-74283480(+)$1	246	221	237	13.5769
CUCUACCCCCUCUAGA	chrM:8086-8294(+)$1	208	190	206	13.5769
uuuuuuaauguugaaa	chr8:9629756-9630018(+)$1	262	209	225	9.8325
CCUGCACUUUCCGUAG	chr3:133497329-133497587(+)$1	258	112	128	13.6542
cgcgggcgggcaccgc	chr19:18530345-18530622(+)$1	277	227	243	13.5769
UGCUUGCAACUAUAGC	chrM:15041-15257(+)$1	216	64	80	10.0265
CGCCCCAGGACAGGGC	chr12:123997756-123998008(-)$1	252	119	135	13.4516
GGGGCGUCCUGGGCCU	chr1:229693930-229694232(-)$1	302	74	90	12.5397
GAUGCCAACACAGCAG	chrM:12701-12924(+)$1	223	122	138	13.2523
CCGGCCCGCUCUGCUG	chr22:19711744-19712005(+)$1	261	49	65	12.8365
cuauggaggagACAGA	chr17:34171767-34172045(+)$1	278	98	114	11.1320
CUUGCAACUAUAGCAA	chrM:14922-15152(+)$1	230	185	201	12.4029
AGAAGUUUUUUUCUUC	chrM:9307-9540(+)$1	233	166	182	13.1378
AGAAUUCCAACUAUUC	chr3:133476588-133476891(+)$1	303	50	66	12.8635
GGUGGAACAUCCCCAU	chr3:133473288-133473618(+)$1	330	161	177	13.8031
CUCAGAAUGAUCCUGA	chr1:230838864-230839139(-)$1	275	31	47	13.6765
GAGGUGGGCCAAACCU	chr6:31760725-31760998(-)$1	273	56	72	13.5769
CGGCUGGGGUUGAgcc	chr1:2126017-2126311(-)$1	294	144	160	11.7694
GAUGCCAACACAGCAG	chrM:12757-12999(+)$1	242	66	82	13.2523
CAGGGGUUGAGGUCUU	chrM:14362-14573(-)$1	211	149	165	12.5397
CUCUACCCCCUCUAGA	chrM:8094-8317(+)$1	223	182	198	13.5769
GGGGUAGUGUUgggcc	chr8:145149927-145150237(+)$1	310	102	118	13.1303
GCUGUGGGUGAAAGAG	chrM:14157-14378(-)$1	221	12	28	13.7496
CUUCGACCCCGCCGGA	chrM:6537-6773(+)$1	236	23	39	12.6026
GCCGCGGUGCUGGCGG	chr19:2270510-2270783(+)$1	273	199	215	13.5769
CGGCUACUCGGGAGCC	chr3:133474135-133474436(+)$1	301	183	199	13.7610
UAGGUGGCCGGGGCCU	chr2:11484091-11484339(-)$1	248	219	235	13.5769
UGCUUGCAACUAUAGC	chrM:15026-15241(+)$1	215	79	95	10.0265
GCUGUGGGUGAAAGAG	chrM:14290-14500(-)$1	210	134	150	13.7496
CAGGCUCCCUCUGCCU	chr3:13418913-13419165(-)$1	252	80	96	13.5769
ACUACACGACACGUAC	chrM:6818-7027(+)$1	209	183	199	13.3002
GAGGCGCUGCAGGCCU	chr22:21983237-21983519(-)$1	282	63	79	13.6542
ACCCCCAGUUCUGGGG	chr11:111896272-111896536(+)$1	264	107	123	13.7610
AGCCAGUAGCUUUGUG	chr2:216274294-216274518(-)$1	224	129	145	9.1224
GAUGCCAACACAGCAG	chrM:12684-12901(+)$1	217	139	155	13.2523
UCAGGAUCACCCAACC	chr14:94849282-94849530(-)$1	248	78	94	9.6326
GUGGCUGCUGUUGCUU	chr22:50018090-50018335(-)$1	245	110	126	13.3056
UGGAAAAAUGAAGUCC	chr2:21228768-21229014(-)$1	246	171	187	10.0265
GCUGUGGGUGAAAGAG	chrM:14259-14470(-)$1	211	104	120	13.7496
UGGCGCAGUAACGGCC	chr1:231557523-231557809(-)$1	286	60	76	9.3242
GACACUGUCGAUGUUG	chr21:45941872-45942121(+)$1	249	97	113	13.3128
GCUGUGGGUGAAAGAG	chrM:14184-14391(-)$1	207	25	41	13.7496
GUGGCGGCCCAGGACC	chr11:64013976-64014219(-)$1	243	135	151	13.7196
CAGCUCUCCCUAAGCU	chrM:12501-12713(+)$1	212	58	74	12.8635
CUUGCAACUAUAGCAA	chrM:15085-15306(+)$1	221	22	38	13.6542
AAGACAUCCUUACUUU	chr4:74275052-74275304(+)$1	252	40	56	9.8325
UACUCGCAUCAGGAGU	chrM:9398-9641(+)$1	243	218	234	13.1521
CGAGUCAGCCCAACUC	chr2:216279513-216279767(-)$1	254	125	141	12.8635
agagguucaauuccuc	chrM:3219-3456(+)$1	237	61	77	13.5769
GUCCGGCUGCAGUGGA	chr19:50985390-50985643(+)$1	253	3	19	11.7694

#DB
(((.(.......).))	chrM:14253-14459(-)$1	1	93	109	13.7496
(((.(.......).))	chrM:14191-14399(-)$1	1	33	49	13.7496
(((.(.......))))	chr2:216248669-216248910(-)$1	1	1	17	13.7357
.((((.......))))	chrM:15064-15278(+)$1	1	43	59	12.8635
(.(((.......))).	chrM:6827-7032(+)$1	1	174	190	13.3002
(.(((.......))).	chrM:6832-7052(+)$1	1	169	185	13.3002
..(((.......))).	chrM:12724-12939(+)$1	1	99	115	13.2523
..(((.......))).	chr1:1155984-1156227(-)$1	1	63	79	12.4459
..(((.......))).	chrM:12654-12862(+)$1	1	169	185	13.2523
(((((.......))))	chr2:216272966-216273193(-)$1	1	28	44	13.5769
(((((.......))))	chrM:3256-3477(+)$1	1	24	40	13.5769
.((((.......))))	chr17:38153988-38154257(+)$1	1	249	265	12.8635
(((((.......))))	chr4:74283234-74283480(+)$1	1	221	237	13.5769
(((((.......))))	chrM:8086-8294(+)$1	1	190	206	13.5769
(((.........))))	chr8:9629756-9630018(+)$1	1	209	225	9.8325
)((((.......))))	chr3:133497329-133497587(+)$1	1	112	128	13.6542
(((((.......))))	chr19:18530345-18530622(+)$1	1	227	243	13.5769
((((.........)))	chrM:15041-15257(+)$1	1	64	80	10.0265
(((((.......))))	chr12:123997756-123998008(-)$1	1	119	135	13.4516
(((((.......))))	chr1:229693930-229694232(-)$1	1	74	90	12.5397
..(((.......))).	chrM:12701-12924(+)$1	1	122	138	13.2523
(((((.......))).	chr22:19711744-19712005(+)$1	1	49	65	12.8365
((.((.......))..	chr17:34171767-34172045(+)$1	1	98	114	11.1320
))(((.......))).	chrM:14922-15152(+)$1	1	185	201	12.4029
.((((.......))))	chrM:9307-9540(+)$1	1	166	182	13.1378
.((((.......))))	chr3:133476588-133476891(+)$1	1	50	66	12.8635
.((((.......))))	chr3:133473288-133473618(+)$1	1	161	177	13.8031
)((((.......))))	chr1:230838864-230839139(-)$1	1	31	47	13.6765
(((((.......))))	chr6:31760725-31760998(-)$1	1	56	72	13.5769
(((((.......))))	chr1:2126017-2126311(-)$1	1	144	160	11.7694
..(((.......))).	chrM:12757-12999(+)$1	1	66	82	13.2523
(((((.......))))	chrM:14362-14573(-)$1	1	149	165	12.5397
(((((.......))))	chrM:8094-8317(+)$1	1	182	198	13.5769
(((.(.......).))	chr8:145149927-145150237(+)$1	1	102	118	13.1303
(((.(.......).))	chrM:14157-14378(-)$1	1	12	28	13.7496
(((((.......))))	chrM:6537-6773(+)$1	1	23	39	12.6026
(((((.......))))	chr19:2270510-2270783(+)$1	1	199	215	13.5769
.((((.......))))	chr3:133474135-133474436(+)$1	1	183	199	13.7610
(((((.......))))	chr2:11484091-11484339(-)$1	1	219	235	13.5769
((((.........)))	chrM:15026-15241(+)$1	1	79	95	10.0265
(((.(.......).))	chrM:14290-14500(-)$1	1	134	150	13.7496
(((((.......))))	chr3:13418913-13419165(-)$1	1	80	96	13.5769
(.(((.......))).	chrM:6818-7027(+)$1	1	183	199	13.3002
(((((.......))))	chr22:21983237-21983519(-)$1	1	63	79	13.6542
.((((.......))))	chr11:111896272-111896536(+)$1	1	107	123	13.7610
))(((.........))	chr2:216274294-216274518(-)$1	1	129	145	9.1224
..(((.......))).	chrM:12684-12901(+)$1	1	139	155	13.2523
(((((.........))	chr14:94849282-94849530(-)$1	1	78	94	9.6326
(.(((.......))).	chr22:50018090-50018335(-)$1	1	110	126	13.3056
((((.........)))	chr2:21228768-21229014(-)$1	1	171	187	10.0265
(((.(.......).))	chrM:14259-14470(-)$1	1	104	120	13.7496
.(((.........)))	chr1:231557523-231557809(-)$1	1	60	76	9.3242
.((((.......).))	chr21:45941872-45942121(+)$1	1	97	113	13.3128
(((.(.......).))	chrM:14184-14391(-)$1	1	25	41	13.7496
(((((.......).))	chr11:64013976-64014219(-)$1	1	135	151	13.7196
.((((.......))))	chrM:12501-12713(+)$1	1	58	74	12.8635
)((((.......))))	chrM:15085-15306(+)$1	1	22	38	13.6542
(((.........))))	chr4:74275052-74275304(+)$1	1	40	56	9.8325
)((((.......))))	chrM:9398-9641(+)$1	1	218	234	13.1521
.((((.......))))	chr2:216279513-216279767(-)$1	1	125	141	12.8635
(((((.......))))	chrM:3219-3456(+)$1	1	61	77	13.5769
(((((.......))))	chr19:50985390-50985643(+)$1	1	3	19	11.7694

#PSSM
e : 0.32	d : 0.17	# : 0.09	: : 0.08	c : 0.04	f : 0.04	[ : 0.04	h : 0.03	g : 0.03	+ : 0.01	! : 0.01	= : 0.01	i : 0.01	a : 0.01	$ : 0.01	G : 0.01	
d : 0.35	e : 0.32	# : 0.09	[ : 0.06	f : 0.04	g : 0.03	c : 0.03	h : 0.01	= : 0.01	i : 0.01	
d : 0.32	e : 0.30	c : 0.25	g : 0.03	f : 0.03	[ : 0.01	= : 0.01	i : 0.01	
d : 0.30	c : 0.25	e : 0.17	[ : 0.12	r : 0.03	g : 0.03	f : 0.03	b : 0.01	i : 0.01	
d : 0.24	c : 0.22	e : 0.17	a : 0.16	r : 0.09	g : 0.03	f : 0.03	b : 0.01	i : 0.01	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
p : 0.87	r : 0.12	
d : 0.24	e : 0.20	c : 0.19	a : 0.16	r : 0.09	g : 0.03	f : 0.03	b : 0.01	i : 0.01	
d : 0.30	c : 0.20	e : 0.20	] : 0.14	g : 0.03	f : 0.03	r : 0.03	b : 0.01	i : 0.01	
d : 0.32	e : 0.30	c : 0.25	g : 0.03	f : 0.03	2 : 0.01	= : 0.01	i : 0.01	
d : 0.32	e : 0.30	] : 0.08	4 : 0.08	c : 0.06	g : 0.03	f : 0.03	5 : 0.01	2 : 0.01	: : 0.01	= : 0.01	i : 0.01	

#score	793.097002005975
#seq	62
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_CDS_m2_run1.txt

#BEAR
===!!ccc[a[ddddmmmmdddd]accc]======	chr12:107360946-107361198(+)$1	252	42	77	16.5646
ooooooccc:eeeeeooooooeeeee:========	chr19:11256982-11257249(-)$1	267	36	71	16.9084
cc####dddd[eeeeennnnneeeee]dddd4444	chr4:39459953-39460161(-)$1	208	141	176	17.9393
[ggggggg[a[ddddoooooodddda]ggggggge	chr5:133707175-133707418(+)$1	243	9	44	17.6678
geeeeebb[a[eeeeennnnneeeee]a]bb22ee	chr14:81686746-81687065(-)$1	319	250	285	18.6208

#otherMatches

#Seq PSSM
AAAAAUAUACUGAAUUAAAGUUCUGAUAGUUUUUA	chr12:107360946-107361198(+)$1	252	42	77	16.5646
cgccuuggccucccaaagugcugggauuacaggug	chr19:11256982-11257249(-)$1	267	36	71	16.9084
GAAAAUGGUAUGAGACUUGAUGUCUUUUACUUACA	chr4:39459953-39460161(-)$1	208	141	176	17.9393
gcggcggcggcgAUCCACAGUGAUUcggccgccgc	chr5:133707175-133707418(+)$1	243	9	44	17.6678
UGGCCGGCGGGGGCUUCGUUCAGGCUGCAGCAACG	chr14:81686746-81687065(-)$1	319	250	285	18.6208

#DB
(((..(((.(.((((....)))).)))).))))))	chr12:107360946-107361198(+)$1	1	42	77	16.5646
......))).(((((......))))).((((((((	chr19:11256982-11257249(-)$1	1	36	71	16.9084
((....((((.(((((.....))))).))))....	chr4:39459953-39460161(-)$1	1	141	176	17.9393
.(((((((.(.((((......))))).))))))))	chr5:133707175-133707418(+)$1	1	9	44	17.6678
((((((((.(.(((((.....))))).).))..))	chr14:81686746-81687065(-)$1	1	250	285	18.6208

#PSSM
= : 0.20	o : 0.20	c : 0.20	[ : 0.20	g : 0.20	
= : 0.20	o : 0.20	c : 0.20	g : 0.20	e : 0.20	
= : 0.20	o : 0.20	# : 0.20	g : 0.20	e : 0.20	
! : 0.20	o : 0.20	# : 0.20	g : 0.20	e : 0.20	
! : 0.20	o : 0.20	# : 0.20	g : 0.20	e : 0.20	
c : 0.20	o : 0.20	# : 0.20	g : 0.20	e : 0.20	
c : 0.40	d : 0.20	g : 0.20	b : 0.20	
c : 0.40	d : 0.20	g : 0.20	b : 0.20	
[ : 0.60	c : 0.20	d : 0.20	
a : 0.60	: : 0.20	d : 0.20	
[ : 0.80	e : 0.20	
e : 0.60	d : 0.40	
e : 0.60	d : 0.40	
e : 0.60	d : 0.40	
e : 0.60	d : 0.40	
o : 0.40	e : 0.40	m : 0.20	
o : 0.40	n : 0.40	m : 0.20	
o : 0.40	n : 0.40	m : 0.20	
o : 0.40	n : 0.40	m : 0.20	
o : 0.40	n : 0.40	d : 0.20	
o : 0.40	n : 0.40	d : 0.20	
e : 0.60	d : 0.40	
e : 0.60	d : 0.40	
e : 0.60	] : 0.20	d : 0.20	
e : 0.60	a : 0.20	d : 0.20	
e : 0.60	c : 0.20	a : 0.20	
] : 0.60	c : 0.20	: : 0.20	
c : 0.20	= : 0.20	d : 0.20	g : 0.20	a : 0.20	
] : 0.40	= : 0.20	d : 0.20	g : 0.20	
= : 0.40	d : 0.20	g : 0.20	b : 0.20	
= : 0.40	d : 0.20	g : 0.20	b : 0.20	
= : 0.40	4 : 0.20	g : 0.20	2 : 0.20	
= : 0.40	4 : 0.20	g : 0.20	2 : 0.20	
= : 0.40	4 : 0.20	g : 0.20	e : 0.20	
= : 0.40	e : 0.40	4 : 0.20	

#score	87.7012414513
#seq	5
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_transcript_m3_run1.txt

#BEAR
eeeeemmmmeeeee	chr1:149814934-149815166(+)$1	232	51	65	12.2058
eeeeemmmmeeeee	chr6:26055932-26056152(-)$1	220	135	149	12.2058
eeeeemmmmeeeee	chr9:130575934-130576192(+)$1	258	57	71	12.2058
eeeeemmmmeeeee	chr6:27860378-27860621(-)$1	243	9	23	12.2058
eeeeemmmmeeeee	chr1:149783334-149783576(-)$1	242	31	45	12.2058
eeeeemmmmeeeee	chr6:27861507-27861762(+)$1	255	66	80	12.2058
eeeeemmmmeeeee	chr6:26285248-26285477(-)$1	229	175	189	12.2058
eeeeemmmmeeeee	chr6:16266055-16266331(+)$1	276	144	158	12.2058
!eeeeellleeeee	chr5:137896628-137896845(-)$1	217	29	43	9.7842
eeeeemmmmeeeee	chr6:26196976-26197224(-)$1	248	214	228	12.2058
eeeeemmmmeeeee	chr6:26055872-26056103(-)$1	231	86	100	12.2058
eeeeemmmmeeeee	chr6:26027025-26027257(-)$1	232	169	183	12.2058
eeeeemmmmeeeee	chr11:118965970-118966233(-)$1	263	72	86	12.2058
eeeeemmmmeeeee	chr6:27806772-27806986(+)$1	214	0	14	12.2058
eeeeemmmmeeeee	chr6:26198912-26199117(-)$1	205	174	188	12.2058
eeeeemmmmeeeee	chr6:26123595-26123800(-)$1	205	1	15	12.2058
eeeeellleeeee3	chr6:26124687-26124937(+)$1	250	86	100	9.4770
eeeeemmmmeeeee	chr1:149857670-149857939(-)$1	269	130	144	12.2058
eeeeemmmmeeeee	chr1:149813687-149813993(-)$1	306	132	146	12.2058
eeeeemmmmeeeee	chr1:149821745-149821998(-)$1	253	38	52	12.2058
eeeeemmmmeeeee	chr6:26124750-26124979(+)$1	229	194	208	12.2058
eeeeemmmmeeeee	chr1:149814966-149815194(+)$1	228	19	33	12.2058
[eeeeellleeeee	chr6:26204764-26205046(+)$1	282	149	163	9.8083
eeeeemmmmeeeee	chr6:26055910-26056117(-)$1	207	100	114	12.2058
eeeeemmmmeeeee	chr6:26252152-26252401(+)$1	249	108	122	12.2058
eeeeemmmmeeeee	chr6:27860421-27860671(-)$1	250	59	73	12.2058
eeeeemmmmeeeee	chr6:26055927-26056132(-)$1	205	115	129	12.2058
[eeeeellleeeee	chr6:27100755-27100971(+)$1	216	146	160	9.8083
eeeeemmmmeeeee	chr6:26200100-26200304(+)$1	204	122	136	12.2058
[eeeeellleeeee	chr6:26031785-26032007(-)$1	222	13	27	9.8083
eeeeemmmmeeeee	chr6:26055917-26056127(-)$1	210	110	124	12.2058
eeeeemmmmeeeee	chr6:27792118-27792355(+)$1	237	213	227	12.2058
eeeeemmmmeeeee	chr6:16266131-16266423(+)$1	292	68	82	12.2058
eeeeellleeeee]	chr6:27857994-27858239(-)$1	245	8	22	9.5169
eeeeemmmmeeeee	chr6:27834471-27834760(-)$1	289	235	249	12.2058
eeeeellleeeee3	chr6:27114040-27114250(-)$1	210	55	69	9.4770
[eeeeellleeeee	chr6:26020995-26021279(+)$1	284	16	30	9.8083
eeeeemmmmeeeee	chr6:26055952-26056192(-)$1	240	175	189	12.2058
eeeeemmmmeeeee	chr6:26285277-26285486(-)$1	209	184	198	12.2058
eeeeemmmmeeeee	chr6:27861562-27861766(+)$1	204	166	180	12.2058
eeeeemmmmeeeee	chr11:118965445-118965677(-)$1	232	92	106	12.2058

#otherMatches

#Seq PSSM
GUCCCUGCCGGGAC	chr1:149814934-149815166(+)$1	232	51	65	12.2058
UAGGCGAACGCCUA	chr6:26055932-26056152(-)$1	220	135	149	12.2058
UGGCCUAGGGGCCA	chr9:130575934-130576192(+)$1	258	57	71	12.2058
GGCGGUGUUCUGCC	chr6:27860378-27860621(-)$1	243	9	23	12.2058
GUGUCCGAGGGCAC	chr1:149783334-149783576(-)$1	242	31	45	12.2058
GUGUCCGAGGGCAC	chr6:27861507-27861762(+)$1	255	66	80	12.2058
UUGCUGAGAAGUAG	chr6:26285248-26285477(-)$1	229	175	189	12.2058
uuguggaugugcaa	chr6:16266055-16266331(+)$1	276	144	158	12.2058
CUCUUUGACAAAGA	chr5:137896628-137896845(-)$1	217	29	43	9.7842
CUUUUCUAUAAAAG	chr6:26196976-26197224(-)$1	248	214	228	12.2058
UAGGCGAACGCCUA	chr6:26055872-26056103(-)$1	231	86	100	12.2058
GGAUGGUAACAUCU	chr6:26027025-26027257(-)$1	232	169	183	12.2058
GGCGGGCGUCUGUU	chr11:118965970-118966233(-)$1	263	72	86	12.2058
GUGUCGGAGGGCAC	chr6:27806772-27806986(+)$1	214	0	14	12.2058
CCAUUUAUAAGUGG	chr6:26198912-26199117(-)$1	205	174	188	12.2058
GUGUCGGAGGGCAC	chr6:26123595-26123800(-)$1	205	1	15	12.2058
AGGGCGGCGUCCUU	chr6:26124687-26124937(+)$1	250	86	100	9.4770
GUCCCUGCCGGGAC	chr1:149857670-149857939(-)$1	269	130	144	12.2058
GGCCCAAGUGGGCC	chr1:149813687-149813993(-)$1	306	132	146	12.2058
GUCCCUGCCGGGAC	chr1:149821745-149821998(-)$1	253	38	52	12.2058
CUGCUUGUAGGUAG	chr6:26124750-26124979(+)$1	229	194	208	12.2058
GUCCCUGCCGGGAC	chr1:149814966-149815194(+)$1	228	19	33	12.2058
AGGCGCUAAGCGUC	chr6:26204764-26205046(+)$1	282	149	163	9.8083
UAGGCGAACGCCUA	chr6:26055910-26056117(-)$1	207	100	114	12.2058
UGGACGCAUGUUCA	chr6:26252152-26252401(+)$1	249	108	122	12.2058
GGCGGUGUUCUGCC	chr6:27860421-27860671(-)$1	250	59	73	12.2058
UAGGCGAACGCCUA	chr6:26055927-26056132(-)$1	205	115	129	12.2058
CGCUCUUCUAGGGC	chr6:27100755-27100971(+)$1	216	146	160	9.8083
CAGCUAUAGAGUUG	chr6:26200100-26200304(+)$1	204	122	136	12.2058
GCCUACUUGGUAGG	chr6:26031785-26032007(-)$1	222	13	27	9.8083
UAGGCGAACGCCUA	chr6:26055917-26056127(-)$1	210	110	124	12.2058
GUUCUGGGGGGAAC	chr6:27792118-27792355(+)$1	237	213	227	12.2058
uuguggaugugcaa	chr6:16266131-16266423(+)$1	292	68	82	12.2058
CACGCCAAGCGUGU	chr6:27857994-27858239(-)$1	245	8	22	9.5169
GCAAGAUUCCUUGC	chr6:27834471-27834760(-)$1	289	235	249	12.2058
CUUGCCAAGUAAGC	chr6:27114040-27114250(-)$1	210	55	69	9.4770
GCCUACUUGGUAGG	chr6:26020995-26021279(+)$1	284	16	30	9.8083
UAGGCGAACGCCUA	chr6:26055952-26056192(-)$1	240	175	189	12.2058
UUGCUGAGAAGUAG	chr6:26285277-26285486(-)$1	209	184	198	12.2058
CCUCCAUUAGGAGG	chr6:27861562-27861766(+)$1	204	166	180	12.2058
CUGAGCCGCUUCAG	chr11:118965445-118965677(-)$1	232	92	106	12.2058

#DB
(((((....)))))	chr1:149814934-149815166(+)$1	1	51	65	12.2058
(((((....)))))	chr6:26055932-26056152(-)$1	1	135	149	12.2058
(((((....)))))	chr9:130575934-130576192(+)$1	1	57	71	12.2058
(((((....)))))	chr6:27860378-27860621(-)$1	1	9	23	12.2058
(((((....)))))	chr1:149783334-149783576(-)$1	1	31	45	12.2058
(((((....)))))	chr6:27861507-27861762(+)$1	1	66	80	12.2058
(((((....)))))	chr6:26285248-26285477(-)$1	1	175	189	12.2058
(((((....)))))	chr6:16266055-16266331(+)$1	1	144	158	12.2058
.(((((...)))))	chr5:137896628-137896845(-)$1	1	29	43	9.7842
(((((....)))))	chr6:26196976-26197224(-)$1	1	214	228	12.2058
(((((....)))))	chr6:26055872-26056103(-)$1	1	86	100	12.2058
(((((....)))))	chr6:26027025-26027257(-)$1	1	169	183	12.2058
(((((....)))))	chr11:118965970-118966233(-)$1	1	72	86	12.2058
(((((....)))))	chr6:27806772-27806986(+)$1	1	0	14	12.2058
(((((....)))))	chr6:26198912-26199117(-)$1	1	174	188	12.2058
(((((....)))))	chr6:26123595-26123800(-)$1	1	1	15	12.2058
(((((...))))).	chr6:26124687-26124937(+)$1	1	86	100	9.4770
(((((....)))))	chr1:149857670-149857939(-)$1	1	130	144	12.2058
(((((....)))))	chr1:149813687-149813993(-)$1	1	132	146	12.2058
(((((....)))))	chr1:149821745-149821998(-)$1	1	38	52	12.2058
(((((....)))))	chr6:26124750-26124979(+)$1	1	194	208	12.2058
(((((....)))))	chr1:149814966-149815194(+)$1	1	19	33	12.2058
.(((((...)))))	chr6:26204764-26205046(+)$1	1	149	163	9.8083
(((((....)))))	chr6:26055910-26056117(-)$1	1	100	114	12.2058
(((((....)))))	chr6:26252152-26252401(+)$1	1	108	122	12.2058
(((((....)))))	chr6:27860421-27860671(-)$1	1	59	73	12.2058
(((((....)))))	chr6:26055927-26056132(-)$1	1	115	129	12.2058
.(((((...)))))	chr6:27100755-27100971(+)$1	1	146	160	9.8083
(((((....)))))	chr6:26200100-26200304(+)$1	1	122	136	12.2058
.(((((...)))))	chr6:26031785-26032007(-)$1	1	13	27	9.8083
(((((....)))))	chr6:26055917-26056127(-)$1	1	110	124	12.2058
(((((....)))))	chr6:27792118-27792355(+)$1	1	213	227	12.2058
(((((....)))))	chr6:16266131-16266423(+)$1	1	68	82	12.2058
(((((...))))).	chr6:27857994-27858239(-)$1	1	8	22	9.5169
(((((....)))))	chr6:27834471-27834760(-)$1	1	235	249	12.2058
(((((...))))).	chr6:27114040-27114250(-)$1	1	55	69	9.4770
.(((((...)))))	chr6:26020995-26021279(+)$1	1	16	30	9.8083
(((((....)))))	chr6:26055952-26056192(-)$1	1	175	189	12.2058
(((((....)))))	chr6:26285277-26285486(-)$1	1	184	198	12.2058
(((((....)))))	chr6:27861562-27861766(+)$1	1	166	180	12.2058
(((((....)))))	chr11:118965445-118965677(-)$1	1	92	106	12.2058

#PSSM
e : 0.87	[ : 0.09	! : 0.02	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
m : 0.80	e : 0.12	l : 0.07	
m : 0.80	l : 0.19	
m : 0.80	l : 0.19	
m : 0.80	l : 0.12	e : 0.07	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 0.92	3 : 0.04	] : 0.02	

#score	480.28177529649537
#seq	41
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_CDS_m3_run1.txt

#BEAR
cc[eeeeeqqqqqqqqeeeeecc	chr5:158634782-158635048(-)$1	266	115	138	12.2412
fgggggggqqqqqqqqggggggg	chr2:201728806-201729067(-)$1	261	57	80	10.8830
dd[eeeeeqqqqqqqqeeeee]d	chr17:80789358-80789625(+)$1	267	68	91	12.4979
===xxxxxxxxxxxxxxx=====	chr17:80788037-80788281(+)$1	244	81	104	7.3522
gg[ddddssssssssssdddd]g	chr17:29622328-29622594(+)$1	266	82	105	8.8713
iiiiiiirrrrrrrrriiiiiii	chr12:50135945-50136257(+)$1	312	174	197	8.8035
iiiiiiiiqqqqqqqqiiiiiii	chr3:99567523-99567841(+)$1	318	106	129	11.2017
ee[ccc[arrrrrrrrra]ccc]	chr1:247094471-247094745(-)$1	274	156	179	9.1735
ddd!!cccqqqqqqqqccc]ddd	chr17:74287954-74288216(-)$1	262	157	180	11.7326
dd[eeeeepppppppeeeee]dd	chr11:940786-941056(+)$1	270	114	137	7.7135
ffaeeeeerrrrrrrrreeeee]	chr4:52774982-52775246(+)$1	264	142	165	9.2178
hhhhhhhhqqqqqqqqhhhhhhh	chr2:186660608-186660931(-)$1	323	206	229	8.9498
cc[eeeeepppppppeeeee333	chr3:99549300-99549541(+)$1	241	145	168	7.6022
dd[cccxxxxxxxxxxxxxxxcc	chr2:201728764-201729006(-)$1	242	174	197	7.5730
dddd[cccqqqqqqqqccc]ddd	chr20:30947420-30947665(+)$1	245	25	48	11.6746
ddd[ddddqqqqqqqqdddd]dd	chr21:46281466-46281750(-)$1	284	141	164	11.1135
dd[eeeeeqqqqqqqqeeeeedd	chr2:11721003-11721259(+)$1	256	143	166	12.4623
bb[ddddssssssssssdddd]b	chr6:159047623-159047857(+)$1	234	128	151	8.0431
b!!eeeeeqqqqqqqqeeeee]b	chr17:48545686-48545949(+)$1	263	50	73	11.8073
ddd!!cccqqqqqqqqccc22dd	chr7:923745-924047(+)$1	302	54	77	11.4682
dd[eeeeeooooooeeeee22dd	chr7:6075000-6075263(-)$1	263	212	235	6.8932
f!!ddddcccooooooccc]ddd	chr1:91967158-91967408(+)$1	250	54	77	6.3695
dddd[cccqqqqqqqqccc]ddd	chr17:74288472-74288769(-)$1	297	6	29	11.6746
eeccc[bbrrrrrrrrrbbccc5	chr16:48399219-48399570(-)$1	351	300	323	7.4340
eeeeecccssssssssssccc]e	chr17:29632112-29632463(+)$1	351	290	313	8.7075
b!!eeeeeqqqqqqqqeeeee22	chr2:27998725-27998979(+)$1	254	93	116	11.6379
eee[bbbbqqqqqqqqbb]bbee	chr14:24002712-24003013(+)$1	301	271	294	9.5845
[bbeeeeeqqqqqqqqeeeee]b	chr12:121125100-121125338(+)$1	238	73	96	11.1350
ccc[ddddqqqqqqqqddddccc	chr19:59073422-59073737(+)$1	315	291	314	10.9334
c[bb!!bbqqqqqqqqbb22bbc	chr20:30947465-30947735(+)$1	270	31	54	9.8843
iiiiicccqqqqqqqqcccGGGG	chr2:240921484-240921741(-)$1	257	185	208	8.7619
dddd[cccqqqqqqqqcccdddd	chr17:29622546-29622792(+)$1	246	45	68	11.5751
ffffffbbqqqqqqqqbb22fff	chr12:31477780-31478002(-)$1	222	92	115	9.7504
iiiiiiiiooooooiiiiiiiii	chr12:27132598-27132880(-)$1	282	192	215	5.6914
g!!eeeeesssssssssseeeee	chr19:59073599-59073870(+)$1	271	148	171	9.4250
gggggeeeeeooooooeeeee66	chr17:80788856-80789150(+)$1	294	159	182	5.3216
dddd!!bbqqqqqqqqbb22ddd	chr12:104681010-104681270(+)$1	260	90	113	11.1962
eeee!!bbqqqqqqqqbb22eee	chr3:99567708-99567970(+)$1	262	169	192	11.0429
####a[bbqqqqqqqqbb]a333	chr3:99569568-99569897(+)$1	329	91	114	10.8417
h!!eeeeepppppppeeeeehhh	chr1:1689858-1690096(-)$1	238	146	169	6.8926
dccc!!bbqqqqqqqqbb22ccc	chr17:74288199-74288433(-)$1	234	3	26	11.0790
[ffffffssssssssssffffff	chr17:29622740-29622984(+)$1	244	37	60	7.0762
[gggggggssssssssssggggg	chr2:3322522-3322750(-)$1	228	150	173	8.5069
dd[eeeeepppppppeeeee]dd	chr11:940686-940966(+)$1	280	214	237	7.7135
d[bbddddqqqqqqqqdddd444	chr7:141478453-141478703(+)$1	250	154	177	10.4809
dd[cccrrrrrrrrrccc]dddd	chr3:49756505-49756844(+)$1	339	252	275	8.4214
ee[dddd[aqqqqqqqqadddd2	chr17:44626328-44626584(-)$1	256	39	62	9.9310
eeeee[bbqqqqqqqqbb]eeee	chr17:29632263-29632537(+)$1	274	196	219	11.2734
ddddddddoooooodddd]dddd	chr3:185538711-185538987(-)$1	276	125	148	5.8399

#otherMatches

#Seq PSSM
CUGCAGUCGUGACCCAGGCUGAG	chr5:158634782-158635048(-)$1	266	115	138	12.2412
CGCCUGACGCGGGACGGUCGGGC	chr2:201728806-201729067(-)$1	261	57	80	10.8830
AUGUGGCUGGAGAUGGAGCCAGG	chr17:80789358-80789625(+)$1	267	68	91	12.4979
UUGUCCUCUUUUGUCCUUUGGGU	chr17:80788037-80788281(+)$1	244	81	104	7.3522
CGUUGUUUCCUUUGUUCGAUAUU	chr17:29622328-29622594(+)$1	266	82	105	8.8713
GCUCAGCAAGGGCGUCGUUGGGC	chr12:50135945-50136257(+)$1	312	174	197	8.8035
CGGUAGAGGUUUUGGACUUUACU	chr3:99567523-99567841(+)$1	318	106	129	11.2017
GCAGUCGGGUCCCUUUACGGACG	chr1:247094471-247094745(-)$1	274	156	179	9.1735
GGUCAGCAAGGUAUGGUGCAACC	chr17:74287954-74288216(-)$1	262	157	180	11.7326
AGGUGGGUGUUGUGAGCCCGGCU	chr11:940786-941056(+)$1	270	114	137	7.7135
ACCCUUGCAGAGCAGGAGUAAGU	chr4:52774982-52775246(+)$1	264	142	165	9.2178
AGCAGUAAUGUGUUCUUUACUGU	chr2:186660608-186660931(-)$1	323	206	229	8.9498
UGAUCUUGAAUUAAACAAGAGAA	chr3:99549300-99549541(+)$1	241	145	168	7.6022
UUGUCUGGAGUAAGUGGAGAAAG	chr2:201728764-201729006(-)$1	242	174	197	7.5730
GUAUGUUGGACAAAGACAAAGUA	chr20:30947420-30947665(+)$1	245	25	48	11.6746
UCCAGUCUGUUGAUCGAGGCAGG	chr21:46281466-46281750(-)$1	284	141	164	11.1135
UGAGUGACACUUGGGAGUUACCG	chr2:11721003-11721259(+)$1	256	143	166	12.4623
CUCUGUGACGUCUCAUACACAUG	chr6:159047623-159047857(+)$1	234	128	151	8.0431
CAGCGGGGAGAGCAACCCCCGGG	chr17:48545686-48545949(+)$1	263	50	73	11.8073
GCAAAGCAGAAGCUGGUGUGGUG	chr7:923745-924047(+)$1	302	54	77	11.4682
UUACACUGAAUUCACAGUGGGAA	chr7:6075000-6075263(-)$1	263	212	235	6.8932
GCUUUGCUCCCCCUGUGGAUGUA	chr1:91967158-91967408(+)$1	250	54	77	6.3695
AGCCUGGUGCAUAUCAGCCUGGC	chr17:74288472-74288769(-)$1	297	6	29	11.6746
GAGGCUGUGAAACUUGAACGCUA	chr16:48399219-48399570(-)$1	351	300	323	7.4340
UUUGGCAGGUGAUAUUGAUUGUC	chr17:29632112-29632463(+)$1	351	290	313	8.7075
CCUCUGAUUUCUUUGUGUCAGCU	chr2:27998725-27998979(+)$1	254	93	116	11.6379
UGUAGAGUAGUUGCAGACGUCAC	chr14:24002712-24003013(+)$1	301	271	294	9.5845
GAUCCGGGGACCCGGGCUCGGCG	chr12:121125100-121125338(+)$1	238	73	96	11.1350
GGUGCUCGGUGAGCCGCGAGACC	chr19:59073422-59073737(+)$1	315	291	314	10.9334
GAUUUAGCAAGGGAGAGCGUAAC	chr20:30947465-30947735(+)$1	270	31	54	9.8843
GGAAGACCUUCUCAUCGGUCUUC	chr2:240921484-240921741(-)$1	257	185	208	8.7619
GGAGUCCCUAUCACAUGGGCUUU	chr17:29622546-29622792(+)$1	246	45	68	11.5751
CGGCCGCCGUCGGGCAGGUCCGG	chr12:31477780-31478002(-)$1	222	92	115	9.7504
UGUUCGAGUGACUGUUUGAAUAC	chr12:27132598-27132880(-)$1	282	192	215	5.6914
CAGGCCGCACUCACCGCAGUGGU	chr19:59073599-59073870(+)$1	271	148	171	9.4250
AGGCUGCCUUGUUGGAGAGGUCG	chr17:80788856-80789150(+)$1	294	159	182	5.3216
CACAAAGCUUCAGCAUGUCAUGU	chr12:104681010-104681270(+)$1	260	90	113	11.1962
UUAGUUUGCAUUUUUCCAUUCUG	chr3:99567708-99567970(+)$1	262	169	192	11.0429
UUCUGCUCUUCCUCCUGAACUCU	chr3:99569568-99569897(+)$1	329	91	114	10.8417
CCAAGCGUGGCCUGGAUGCUGUG	chr1:1689858-1690096(-)$1	238	146	169	6.8926
aaccugguauaguucagcguggu	chr17:74288199-74288433(-)$1	234	3	26	11.0790
GUCAGGUUUAUUAAUGUACCUGG	chr17:29622740-29622984(+)$1	244	37	60	7.0762
AGCACCCCUCCUGAGUUUGGGGU	chr2:3322522-3322750(-)$1	228	150	173	8.5069
AGGUGGGUGUUGUGAGCCCGGCU	chr11:940686-940966(+)$1	280	214	237	7.7135
GUGUGAAGAUUACUAACUUCCAA	chr7:141478453-141478703(+)$1	250	154	177	10.4809
GCAGCUUAGCAGGUCGGCAGCGC	chr3:49756505-49756844(+)$1	339	252	275	8.4214
GCUGCAGAGAAUGGAAGCCUGUU	chr17:44626328-44626584(-)$1	256	39	62	9.9310
CAAAGGAUUCCCUGUUGUGUUUU	chr17:29632263-29632537(+)$1	274	196	219	11.2734
AUGAAGCAGCUGUAUGUUCUCAU	chr3:185538711-185538987(-)$1	276	125	148	5.8399

#DB
((.(((((........)))))))	chr5:158634782-158635048(-)$1	1	115	138	12.2412
((((((((........)))))))	chr2:201728806-201729067(-)$1	1	57	80	10.8830
((.(((((........))))).)	chr17:80789358-80789625(+)$1	1	68	91	12.4979
(((...............)))))	chr17:80788037-80788281(+)$1	1	81	104	7.3522
((.((((..........)))).)	chr17:29622328-29622594(+)$1	1	82	105	8.8713
(((((((.........)))))))	chr12:50135945-50136257(+)$1	1	174	197	8.8035
((((((((........)))))))	chr3:99567523-99567841(+)$1	1	106	129	11.2017
((.(((.(.........).))).	chr1:247094471-247094745(-)$1	1	156	179	9.1735
(((..(((........))).)))	chr17:74287954-74288216(-)$1	1	157	180	11.7326
((.(((((.......))))).))	chr11:940786-941056(+)$1	1	114	137	7.7135
((((((((.........))))).	chr4:52774982-52775246(+)$1	1	142	165	9.2178
((((((((........)))))))	chr2:186660608-186660931(-)$1	1	206	229	8.9498
((.(((((.......)))))...	chr3:99549300-99549541(+)$1	1	145	168	7.6022
((.(((...............))	chr2:201728764-201729006(-)$1	1	174	197	7.5730
((((.(((........))).)))	chr20:30947420-30947665(+)$1	1	25	48	11.6746
(((.((((........)))).))	chr21:46281466-46281750(-)$1	1	141	164	11.1135
((.(((((........)))))))	chr2:11721003-11721259(+)$1	1	143	166	12.4623
((.((((..........)))).)	chr6:159047623-159047857(+)$1	1	128	151	8.0431
(..(((((........))))).)	chr17:48545686-48545949(+)$1	1	50	73	11.8073
(((..(((........)))..))	chr7:923745-924047(+)$1	1	54	77	11.4682
((.(((((......)))))..))	chr7:6075000-6075263(-)$1	1	212	235	6.8932
(..(((((((......))).)))	chr1:91967158-91967408(+)$1	1	54	77	6.3695
((((.(((........))).)))	chr17:74288472-74288769(-)$1	1	6	29	11.6746
(((((.((.........))))).	chr16:48399219-48399570(-)$1	1	300	323	7.4340
((((((((..........))).)	chr17:29632112-29632463(+)$1	1	290	313	8.7075
(..(((((........)))))..	chr2:27998725-27998979(+)$1	1	93	116	11.6379
(((.((((........)).))))	chr14:24002712-24003013(+)$1	1	271	294	9.5845
.(((((((........))))).)	chr12:121125100-121125338(+)$1	1	73	96	11.1350
(((.((((........)))))))	chr19:59073422-59073737(+)$1	1	291	314	10.9334
(.((..((........))..)))	chr20:30947465-30947735(+)$1	1	31	54	9.8843
)))))(((........)))))))	chr2:240921484-240921741(-)$1	1	185	208	8.7619
((((.(((........)))))))	chr17:29622546-29622792(+)$1	1	45	68	11.5751
((((((((........))..)))	chr12:31477780-31478002(-)$1	1	92	115	9.7504
((((((((......)))))))))	chr12:27132598-27132880(-)$1	1	192	215	5.6914
(..(((((..........)))))	chr19:59073599-59073870(+)$1	1	148	171	9.4250
((((((((((......)))))..	chr17:80788856-80789150(+)$1	1	159	182	5.3216
((((..((........))..)))	chr12:104681010-104681270(+)$1	1	90	113	11.1962
((((..((........))..)))	chr3:99567708-99567970(+)$1	1	169	192	11.0429
....(.((........)).)...	chr3:99569568-99569897(+)$1	1	91	114	10.8417
(..(((((.......))))))))	chr1:1689858-1690096(-)$1	1	146	169	6.8926
((((..((........))..)))	chr17:74288199-74288433(-)$1	1	3	26	11.0790
.((((((..........))))))	chr17:29622740-29622984(+)$1	1	37	60	7.0762
.(((((((..........)))))	chr2:3322522-3322750(-)$1	1	150	173	8.5069
((.(((((.......))))).))	chr11:940686-940966(+)$1	1	214	237	7.7135
(.((((((........))))...	chr7:141478453-141478703(+)$1	1	154	177	10.4809
((.(((.........))).))))	chr3:49756505-49756844(+)$1	1	252	275	8.4214
((.((((.(........))))).	chr17:44626328-44626584(-)$1	1	39	62	9.9310
(((((.((........)).))))	chr17:29632263-29632537(+)$1	1	196	219	11.2734
((((((((......)))).))))	chr3:185538711-185538987(-)$1	1	125	148	5.8399

#PSSM
d : 0.34	e : 0.14	c : 0.08	f : 0.08	i : 0.08	g : 0.06	b : 0.06	[ : 0.06	h : 0.04	= : 0.02	# : 0.02	
d : 0.30	e : 0.14	! : 0.10	c : 0.08	g : 0.08	i : 0.08	f : 0.06	b : 0.04	[ : 0.04	= : 0.02	h : 0.02	# : 0.02	
[ : 0.26	d : 0.16	! : 0.10	i : 0.08	e : 0.08	g : 0.06	c : 0.06	b : 0.06	f : 0.04	= : 0.02	a : 0.02	h : 0.02	# : 0.02	
e : 0.32	d : 0.18	c : 0.10	i : 0.08	g : 0.06	[ : 0.06	! : 0.04	b : 0.04	f : 0.04	x : 0.02	h : 0.02	# : 0.02	
e : 0.30	d : 0.16	! : 0.12	i : 0.08	c : 0.08	g : 0.06	[ : 0.06	f : 0.04	x : 0.02	h : 0.02	b : 0.02	a : 0.02	
e : 0.28	c : 0.20	d : 0.16	! : 0.08	i : 0.06	[ : 0.06	g : 0.04	f : 0.04	x : 0.02	h : 0.02	b : 0.02	
e : 0.28	b : 0.18	d : 0.16	c : 0.14	i : 0.06	g : 0.04	x : 0.04	[ : 0.02	h : 0.02	f : 0.02	r : 0.02	
e : 0.28	b : 0.18	c : 0.16	d : 0.08	s : 0.06	g : 0.04	x : 0.04	r : 0.04	i : 0.04	a : 0.02	h : 0.02	[ : 0.02	
q : 0.53	s : 0.12	r : 0.10	p : 0.08	o : 0.06	x : 0.04	c : 0.02	e : 0.02	a : 0.02	
q : 0.55	s : 0.12	r : 0.10	p : 0.08	o : 0.06	x : 0.04	c : 0.02	e : 0.02	
q : 0.55	s : 0.12	r : 0.10	o : 0.10	p : 0.08	x : 0.04	
q : 0.55	s : 0.12	r : 0.10	o : 0.10	p : 0.08	x : 0.04	
q : 0.55	s : 0.12	r : 0.10	o : 0.10	p : 0.08	x : 0.04	
q : 0.55	s : 0.12	r : 0.10	o : 0.10	p : 0.08	x : 0.04	
q : 0.55	s : 0.12	r : 0.10	p : 0.08	x : 0.04	o : 0.04	e : 0.02	i : 0.02	d : 0.02	
q : 0.55	s : 0.12	e : 0.10	r : 0.08	x : 0.04	o : 0.04	i : 0.02	c : 0.02	d : 0.02	
e : 0.24	c : 0.16	b : 0.16	s : 0.12	d : 0.08	i : 0.06	r : 0.06	x : 0.04	g : 0.02	h : 0.02	q : 0.02	
e : 0.26	b : 0.18	c : 0.16	d : 0.12	i : 0.06	s : 0.06	x : 0.04	a : 0.04	g : 0.02	h : 0.02	f : 0.02	
e : 0.28	c : 0.16	d : 0.12	] : 0.12	2 : 0.10	i : 0.06	g : 0.04	= : 0.02	h : 0.02	x : 0.02	b : 0.02	f : 0.02	
e : 0.28	d : 0.18	2 : 0.14	] : 0.08	i : 0.06	c : 0.06	g : 0.04	= : 0.02	h : 0.02	x : 0.02	b : 0.02	G : 0.02	a : 0.02	f : 0.02	
e : 0.22	d : 0.22	c : 0.10	i : 0.06	] : 0.06	g : 0.04	h : 0.04	3 : 0.04	2 : 0.04	b : 0.04	f : 0.04	= : 0.02	x : 0.02	G : 0.02	4 : 0.02	
d : 0.30	c : 0.12	] : 0.12	e : 0.10	i : 0.06	g : 0.04	h : 0.04	3 : 0.04	f : 0.04	= : 0.02	2 : 0.02	b : 0.02	G : 0.02	6 : 0.02	4 : 0.02	
d : 0.30	c : 0.10	e : 0.10	g : 0.06	i : 0.06	b : 0.06	] : 0.04	h : 0.04	3 : 0.04	2 : 0.04	f : 0.04	= : 0.02	5 : 0.02	G : 0.02	6 : 0.02	4 : 0.02	

#score	465.4596796843325
#seq	49
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_UTR_m3_run2.txt

#BEAR
iiiiiiqqqqqqqqiiii	chr17:73233951-73234189(-)$1	238	65	83	13.1793
[eeeeeqqqqqqqqeeee	chr4:2935877-2936133(-)$1	256	107	125	13.6114
:eeeeeqqqqqqqqeeee	chr9:117020769-117020973(+)$1	204	185	203	12.6969
eeee[aqqqqqqqqa]ee	chr2:20550261-20550595(-)$1	334	117	135	13.1776
::ddddqqqqqqqqdddd	chr9:117046924-117047148(+)$1	224	35	53	13.1399
e[a[bbqqqqqqqqbb]a	chr2:191513658-191513921(+)$1	263	226	244	12.6148
c[ddddqqqqqqqqdddd	chr11:60658387-60658660(-)$1	273	153	171	14.9669
"""cccqqqqqqqqccc]	chr12:26875231-26875449(-)$1	218	69	87	13.7794
!!ddddqqqqqqqqdddd	chr16:447942-448197(+)$1	255	17	35	15.2740
i[ddddqqqqqqqqdddd	chr7:139478031-139478311(+)$1	280	125	143	14.9916
Eeeeeeqqqqqqqqeeee	chr15:28508131-28508416(-)$1	285	174	192	12.5632
ddddddrrrrrrrrrddd	chr16:4664156-4664451(-)$1	295	37	55	8.2113
!!ddddqqqqqqqqdddd	chr19:56166203-56166480(+)$1	277	162	180	15.2740
ddddbbqqqqqqqqbb]d	chr5:79946686-79946961(-)$1	275	252	270	13.0434
!!ddddqqqqqqqqdddd	chr19:54041190-54041448(+)$1	258	46	64	15.2740
iiiiiiqqqqqqqqiiii	chr11:3013196-3013461(-)$1	265	168	186	13.1793
##ddddqqqqqqqqdddd	chr2:62974429-62974670(+)$1	241	172	190	15.1064
d[ddddqqqqqqqqdddd	chr17:22022487-22022800(+)$1	313	215	233	14.8803
ggggggqqqqqqqqgggg	chr2:44065358-44065645(-)$1	287	223	241	13.0146
F:cccaqqqqqqqqa]cc	chr17:46048405-46048652(+)$1	247	151	169	12.0144
hhhh[aqqqqqqqqa]hh	chr5:176980204-176980472(-)$1	268	28	46	12.0631
#eeeeeqqqqqqqqeeee	chr15:28510663-28510905(-)$1	242	125	143	13.6430
d[ddddqqqqqqqqdddd	chr5:79946501-79946745(-)$1	244	157	175	14.8803
ddddbbqqqqqqqqbb]d	chr12:132402699-132403001(+)$1	302	209	227	13.0434
##ddddqqqqqqqqdddd	chr2:62974470-62974688(+)$1	218	131	149	15.1064
!!ddddqqqqqqqqdddd	chr9:710782-711044(+)$1	262	208	226	15.2740
c[ddddqqqqqqqqdddd	chr9:35690590-35690872(-)$1	282	116	134	14.9669
bb[cccqqqqqqqqccc]	chr14:56103091-56103354(+)$1	263	73	91	12.9018
%eeeeeqqqqqqqqeeee	chr14:21549699-21549937(+)$1	238	126	144	13.0753
=:ddddqqqqqqqqdddd	chr12:62919644-62919980(+)$1	336	279	297	13.9286
cc[cccqqqqqqqqccc4	chr9:116997788-116998032(+)$1	244	151	169	13.3067
!!ddddqqqqqqqqdddd	chr17:45773262-45773557(+)$1	295	219	237	15.2740
fff[bbqqqqqqqqbb]f	chrX:53710718-53710941(-)$1	223	78	96	11.9215
::ddddqqqqqqqqdddd	chr10:121341870-121342115(-)$1	245	227	245	13.1399
ggggggqqqqqqqqgggg	chr2:44055034-44055303(-)$1	269	186	204	13.0146
ggggggqqqqqqqqgggg	chr17:48823804-48824030(+)$1	226	78	96	13.0146
!!ddddrrrrrrrrrddd	chr20:43029847-43030126(+)$1	279	48	66	9.0137
:eeeeeqqqqqqqqeeee	chr2:36776045-36776320(+)$1	275	238	256	12.6969
$bb[bbqqqqqqqqbb]b	chr14:32546303-32546550(+)$1	247	158	176	11.7070
feeeeeqqqqqqqqeeee	chr7:150777514-150777882(-)$1	368	41	59	13.2839
"""cccqqqqqqqqccc3	chr2:32667098-32667355(+)$1	257	198	216	13.7798
"""cccqqqqqqqqccc4	chr6:111136175-111136406(-)$1	231	87	105	13.7929
!!ddddrrrrrrrrrddd	chr9:117044635-117044851(+)$1	216	2	20	9.0137
!!ddddqqqqqqqqdddd	chr2:97525493-97525817(-)$1	324	123	141	15.2740
ffffffqqqqqqqqffff	chr17:45773171-45773414(+)$1	243	140	158	11.6488
d[ddddqqqqqqqqdddd	chr3:96336714-96336957(-)$1	243	156	174	14.8803
iiiiiiqqqqqqqqiiii	chr16:30935307-30935576(+)$1	269	34	52	13.1793
feeeeeqqqqqqqqeeee	chr19:10221639-10221943(+)$1	304	251	269	13.2839
e[ddddqqqqqqqqdddd	chr9:116999160-116999413(+)$1	253	37	55	14.8731
ddddbbqqqqqqqqbb]d	chr11:10530494-10530736(-)$1	242	158	176	13.0434
::ddddqqqqqqqqdddd	chr17:58469149-58469460(-)$1	311	85	103	13.1399
ee!!bbqqqqqqqqbb22	chr6:15248997-15249294(+)$1	297	141	159	11.9906
"""cccqqqqqqqqccc3	chr8:25315651-25315919(-)$1	268	237	255	13.7798
dddd[aqqqqqqqqa]dd	chr6:56380149-56380464(-)$1	315	245	263	13.7212
ggddddqqqqqqqqdddd	chr11:18034120-18034395(-)$1	275	88	106	14.7305

#otherMatches

#Seq PSSM
AGGGGUGCGGAGUGGCCC	chr17:73233951-73234189(-)$1	238	65	83	13.1793
gggaucgggaucgggauc	chr4:2935877-2936133(-)$1	256	107	125	13.6114
UGGGCUUUGCCCCUAGCC	chr9:117020769-117020973(+)$1	204	185	203	12.6969
GUGGAGAAAGAAGACAUU	chr2:20550261-20550595(-)$1	334	117	135	13.1776
CCUGAGUCCUCAUUCUCA	chr9:117046924-117047148(+)$1	224	35	53	13.1399
UGGGCGGGAAGAAGCGGC	chr2:191513658-191513921(+)$1	263	226	244	12.6148
CUGGUCUGAGUGGUGGCC	chr11:60658387-60658660(-)$1	273	153	171	14.9669
UCUUGGUUUUAUAUUCAU	chr12:26875231-26875449(-)$1	218	69	87	13.7794
GCGCCCUGCAAACUGGGU	chr16:447942-448197(+)$1	255	17	35	15.2740
GUGCCCAGGUGCGAGGGU	chr7:139478031-139478311(+)$1	280	125	143	14.9916
AAAGCUGAUUGAAAAGCU	chr15:28508131-28508416(-)$1	285	174	192	12.5632
CCACCCCUUUUGUCCGGG	chr16:4664156-4664451(-)$1	295	37	55	8.2113
GGCGGCCGGAAGUAGCCG	chr19:56166203-56166480(+)$1	277	162	180	15.2740
AAGGACUAACCCCUGUAC	chr5:79946686-79946961(-)$1	275	252	270	13.0434
UGUACGCUCACAUACGUG	chr19:54041190-54041448(+)$1	258	46	64	15.2740
cuuggggccuggagcccg	chr11:3013196-3013461(-)$1	265	168	186	13.1793
UAAAUUUCUUACCUAAUU	chr2:62974429-62974670(+)$1	241	172	190	15.1064
AUCUAUGUAGCAAAAUAG	chr17:22022487-22022800(+)$1	313	215	233	14.8803
CUACGGCCUGCCCUCUGU	chr2:44065358-44065645(-)$1	287	223	241	13.0146
CGGACCCCUAACCUGUGU	chr17:46048405-46048652(+)$1	247	151	169	12.0144
UGGGAGGGUUGUGGCACU	chr5:176980204-176980472(-)$1	268	28	46	12.0631
GGCUGUCACUGAGAACGG	chr15:28510663-28510905(-)$1	242	125	143	13.6430
GUCUAUGUAGCAAAAUAG	chr5:79946501-79946745(-)$1	244	157	175	14.8803
GCAUUGGGAUAUAACAGG	chr12:132402699-132403001(+)$1	302	209	227	13.0434
UAAAUUUCUUACCUAAUU	chr2:62974470-62974688(+)$1	218	131	149	15.1064
ACCCAGGACCACAUCUGG	chr9:710782-711044(+)$1	262	208	226	15.2740
cguccgggugggagcggg	chr9:35690590-35690872(-)$1	282	116	134	14.9669
AGGUUCAACUACAAGAAG	chr14:56103091-56103354(+)$1	263	73	91	12.9018
AGCCCUGCGAGAAUGGGG	chr14:21549699-21549937(+)$1	238	126	144	13.0753
GGGGGUGAUAUUUAACCU	chr12:62919644-62919980(+)$1	336	279	297	13.9286
CAUGAGAUUUUCCCCUCC	chr9:116997788-116998032(+)$1	244	151	169	13.3067
GAGUCCAUGUUCGAGGAC	chr17:45773262-45773557(+)$1	295	219	237	15.2740
GGGAGCAGGGUUACGUCC	chrX:53710718-53710941(-)$1	223	78	96	11.9215
GAGCAGAUAUUCGGCUGC	chr10:121341870-121342115(-)$1	245	227	245	13.1399
GUGGCACCCAGAACUGUU	chr2:44055034-44055303(-)$1	269	186	204	13.0146
UUUGGUUUUAAAUUAUUA	chr17:48823804-48824030(+)$1	226	78	96	13.0146
GGUUUGAAAGGAAGGCAG	chr20:43029847-43030126(+)$1	279	48	66	9.0137
AGCUCAGGCCUGAAUGAG	chr2:36776045-36776320(+)$1	275	238	256	12.6969
AGGGCGGGGGGAGGUGGC	chr14:32546303-32546550(+)$1	247	158	176	11.7070
CGGGGGGAACCCGGCCCC	chr7:150777514-150777882(-)$1	368	41	59	13.2839
UAAUAAUUAAAAUUUUGC	chr2:32667098-32667355(+)$1	257	198	216	13.7798
GAAGCUGGCGGCGGAGCG	chr6:111136175-111136406(-)$1	231	87	105	13.7929
CCUGCGUCCCUCCCCCGC	chr9:117044635-117044851(+)$1	216	2	20	9.0137
UCAGUGGUAUUUUAUACU	chr2:97525493-97525817(-)$1	324	123	141	15.2740
CCUGCUGAGCUCGGGGCA	chr17:45773171-45773414(+)$1	243	140	158	11.6488
GUCUAUGUAGCAAAAUAG	chr3:96336714-96336957(-)$1	243	156	174	14.8803
GACCCCUGGGCAGUGGGG	chr16:30935307-30935576(+)$1	269	34	52	13.1793
CCCGAGAUGUGGCCCUCG	chr19:10221639-10221943(+)$1	304	251	269	13.2839
GCGGCUGUUCACCUGGCC	chr9:116999160-116999413(+)$1	253	37	55	14.8731
AAGGACUAAUCCCUGUAC	chr11:10530494-10530736(-)$1	242	158	176	13.0434
GACGCCGAGGAGAAGGCG	chr17:58469149-58469460(-)$1	311	85	103	13.1399
ggaggAAGAUGCGCUCGG	chr6:15248997-15249294(+)$1	297	141	159	11.9906
ggggucggggcgagggcg	chr8:25315651-25315919(-)$1	268	237	255	13.7798
AUUCCCCAUUAAAAGAGA	chr6:56380149-56380464(-)$1	315	245	263	13.7212
GCGGUCGACUUAGGGGCC	chr11:18034120-18034395(-)$1	275	88	106	14.7305

#DB
((((((........))))	chr17:73233951-73234189(-)$1	1	65	83	13.1793
.(((((........))))	chr4:2935877-2936133(-)$1	1	107	125	13.6114
.(((((........))))	chr9:117020769-117020973(+)$1	1	185	203	12.6969
((((.(........).))	chr2:20550261-20550595(-)$1	1	117	135	13.1776
..((((........))))	chr9:117046924-117047148(+)$1	1	35	53	13.1399
(.(.((........)).)	chr2:191513658-191513921(+)$1	1	226	244	12.6148
(.((((........))))	chr11:60658387-60658660(-)$1	1	153	171	14.9669
...(((........))).	chr12:26875231-26875449(-)$1	1	69	87	13.7794
..((((........))))	chr16:447942-448197(+)$1	1	17	35	15.2740
(.((((........))))	chr7:139478031-139478311(+)$1	1	125	143	14.9916
((((((........))))	chr15:28508131-28508416(-)$1	1	174	192	12.5632
))((((.........)))	chr16:4664156-4664451(-)$1	1	37	55	8.2113
..((((........))))	chr19:56166203-56166480(+)$1	1	162	180	15.2740
((((((........)).)	chr5:79946686-79946961(-)$1	1	252	270	13.0434
..((((........))))	chr19:54041190-54041448(+)$1	1	46	64	15.2740
((((((........))))	chr11:3013196-3013461(-)$1	1	168	186	13.1793
..((((........))))	chr2:62974429-62974670(+)$1	1	172	190	15.1064
(.((((........))))	chr17:22022487-22022800(+)$1	1	215	233	14.8803
((((((........))))	chr2:44065358-44065645(-)$1	1	223	241	13.0146
(.((((........).))	chr17:46048405-46048652(+)$1	1	151	169	12.0144
((((.(........).))	chr5:176980204-176980472(-)$1	1	28	46	12.0631
.(((((........))))	chr15:28510663-28510905(-)$1	1	125	143	13.6430
(.((((........))))	chr5:79946501-79946745(-)$1	1	157	175	14.8803
((((((........)).)	chr12:132402699-132403001(+)$1	1	209	227	13.0434
..((((........))))	chr2:62974470-62974688(+)$1	1	131	149	15.1064
..((((........))))	chr9:710782-711044(+)$1	1	208	226	15.2740
(.((((........))))	chr9:35690590-35690872(-)$1	1	116	134	14.9669
((.(((........))).	chr14:56103091-56103354(+)$1	1	73	91	12.9018
.(((((........))))	chr14:21549699-21549937(+)$1	1	126	144	13.0753
).((((........))))	chr12:62919644-62919980(+)$1	1	279	297	13.9286
((.(((........))).	chr9:116997788-116998032(+)$1	1	151	169	13.3067
..((((........))))	chr17:45773262-45773557(+)$1	1	219	237	15.2740
(((.((........)).)	chrX:53710718-53710941(-)$1	1	78	96	11.9215
..((((........))))	chr10:121341870-121342115(-)$1	1	227	245	13.1399
((((((........))))	chr2:44055034-44055303(-)$1	1	186	204	13.0146
((((((........))))	chr17:48823804-48824030(+)$1	1	78	96	13.0146
..((((.........)))	chr20:43029847-43030126(+)$1	1	48	66	9.0137
.(((((........))))	chr2:36776045-36776320(+)$1	1	238	256	12.6969
.((.((........)).)	chr14:32546303-32546550(+)$1	1	158	176	11.7070
)(((((........))))	chr7:150777514-150777882(-)$1	1	41	59	13.2839
...(((........))).	chr2:32667098-32667355(+)$1	1	198	216	13.7798
...(((........))).	chr6:111136175-111136406(-)$1	1	87	105	13.7929
..((((.........)))	chr9:117044635-117044851(+)$1	1	2	20	9.0137
..((((........))))	chr2:97525493-97525817(-)$1	1	123	141	15.2740
((((((........))))	chr17:45773171-45773414(+)$1	1	140	158	11.6488
(.((((........))))	chr3:96336714-96336957(-)$1	1	156	174	14.8803
((((((........))))	chr16:30935307-30935576(+)$1	1	34	52	13.1793
)(((((........))))	chr19:10221639-10221943(+)$1	1	251	269	13.2839
(.((((........))))	chr9:116999160-116999413(+)$1	1	37	55	14.8731
((((((........)).)	chr11:10530494-10530736(-)$1	1	158	176	13.0434
..((((........))))	chr17:58469149-58469460(-)$1	1	85	103	13.1399
((..((........))..	chr6:15248997-15249294(+)$1	1	141	159	11.9906
...(((........))).	chr8:25315651-25315919(-)$1	1	237	255	13.7798
((((.(........).))	chr6:56380149-56380464(-)$1	1	245	263	13.7212
))((((........))))	chr11:18034120-18034395(-)$1	1	88	106	14.7305

#PSSM
! : 0.14	d : 0.14	: : 0.09	i : 0.07	e : 0.07	" : 0.07	g : 0.07	f : 0.07	c : 0.05	# : 0.05	[ : 0.01	E : 0.01	F : 0.01	h : 0.01	b : 0.01	% : 0.01	= : 0.01	$ : 0.01	
e : 0.18	[ : 0.14	! : 0.14	: : 0.09	d : 0.09	" : 0.07	g : 0.07	i : 0.05	# : 0.03	b : 0.03	f : 0.03	h : 0.01	c : 0.01	
d : 0.49	e : 0.16	" : 0.07	i : 0.05	g : 0.05	[ : 0.03	f : 0.03	a : 0.01	c : 0.01	h : 0.01	b : 0.01	! : 0.01	
d : 0.49	e : 0.16	c : 0.12	i : 0.05	[ : 0.05	g : 0.05	h : 0.01	f : 0.01	! : 0.01	
d : 0.41	e : 0.14	b : 0.12	c : 0.12	i : 0.05	[ : 0.05	g : 0.05	f : 0.01	
d : 0.41	e : 0.14	b : 0.12	c : 0.10	a : 0.07	i : 0.05	g : 0.05	f : 0.01	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
d : 0.36	e : 0.14	b : 0.12	c : 0.10	a : 0.07	i : 0.05	r : 0.05	g : 0.05	f : 0.01	
d : 0.41	e : 0.14	b : 0.12	c : 0.10	] : 0.07	i : 0.05	g : 0.05	f : 0.01	
d : 0.43	e : 0.16	c : 0.12	] : 0.10	i : 0.05	g : 0.05	h : 0.01	f : 0.01	2 : 0.01	
d : 0.49	e : 0.16	i : 0.05	g : 0.05	] : 0.03	4 : 0.03	f : 0.03	3 : 0.03	a : 0.01	c : 0.01	h : 0.01	b : 0.01	2 : 0.01	

#score	735.3825875855657
#seq	55
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF929AVT_ABCF1_CDS_m2_run2.txt

#BEAR
ffffffqqqqqqqqfffff	chr7:45144136-45144441(-)$1	305	189	208	15.5712
ffffffqqqqqqqqfffff	chr17:27050608-27050830(+)$1	222	139	158	15.5712
!!ddddqqqqqqqqdddd2	chr16:85689999-85690336(+)$1	337	85	104	13.5632
ffffffqqqqqqqqfffff	chr9:139734826-139735104(+)$1	278	258	277	15.5712
gggg[aqqqqqqqqa]ggg	chr17:80045175-80045413(-)$1	238	80	99	14.4881
""ddddqqqqqqqqddddc	chr9:100777588-100777836(+)$1	248	138	157	13.6280
dd!!bbqqqqqqqqbb22d	chr1:984893-985170(+)$1	277	201	220	13.4672
fff[bbqqqqqqqqbbfff	chr19:4037223-4037473(+)$1	250	36	55	15.4307

#otherMatches

#Seq PSSM
GCUGGCAGCUCAGAGCCGG	chr7:45144136-45144441(-)$1	305	189	208	15.5712
UAGUCAUAAUUAACUGACU	chr17:27050608-27050830(+)$1	222	139	158	15.5712
gagcgugagaaggagcgcg	chr16:85689999-85690336(+)$1	337	85	104	13.5632
GCUUCUGAGCUGGAAGAGG	chr9:139734826-139735104(+)$1	278	258	277	15.5712
GACACCAUGCUGCAGAUGU	chr17:80045175-80045413(-)$1	238	80	99	14.4881
CUGCAGAAACAGAACUGUU	chr9:100777588-100777836(+)$1	248	138	157	13.6280
CCAACCCCUGCCAUGGCGG	chr1:984893-985170(+)$1	277	201	220	13.4672
CUUGCAGAGAGAAGUGGGG	chr19:4037223-4037473(+)$1	250	36	55	15.4307

#DB
((((((........)))))	chr7:45144136-45144441(-)$1	1	189	208	15.5712
((((((........)))))	chr17:27050608-27050830(+)$1	1	139	158	15.5712
..((((........)))).	chr16:85689999-85690336(+)$1	1	85	104	13.5632
((((((........)))))	chr9:139734826-139735104(+)$1	1	258	277	15.5712
((((.(........).)))	chr17:80045175-80045413(-)$1	1	80	99	14.4881
..((((........)))))	chr9:100777588-100777836(+)$1	1	138	157	13.6280
((..((........))..)	chr1:984893-985170(+)$1	1	201	220	13.4672
(((.((........)))))	chr19:4037223-4037473(+)$1	1	36	55	15.4307

#PSSM
f : 0.50	! : 0.12	g : 0.12	" : 0.12	d : 0.12	
f : 0.50	! : 0.12	g : 0.12	" : 0.12	d : 0.12	
f : 0.50	d : 0.25	g : 0.12	! : 0.12	
f : 0.37	d : 0.25	g : 0.12	! : 0.12	[ : 0.12	
f : 0.37	d : 0.25	b : 0.25	[ : 0.12	
f : 0.37	d : 0.25	b : 0.25	a : 0.12	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
f : 0.37	d : 0.25	b : 0.25	a : 0.12	
f : 0.37	d : 0.25	b : 0.25	] : 0.12	
f : 0.50	d : 0.25	g : 0.12	2 : 0.12	
f : 0.50	d : 0.25	g : 0.12	2 : 0.12	
f : 0.50	2 : 0.12	g : 0.12	c : 0.12	d : 0.12	

#score	117.29131859975
#seq	8
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_CDS_m1_run2.txt

#BEAR
"cccwwwwwwwwwwwwwwccc33	chr14:102449685-102449999(+)$1	314	116	139	22.1170
!!bbxxxxxxxxxxxxxxxbb22	chr14:39649884-39650194(+)$1	310	140	163	17.9689
ffffwwwwwwwwwwwwwwfffff	chr2:232326571-232326829(-)$1	258	211	234	20.8737
!!cccwwwwwwwwwwwwwwccc2	chr9:131456218-131456421(+)$1	203	95	118	22.4771
"eeeeeuuuuuuuuuuuueeeee	chrX:118971671-118972060(-)$1	389	138	161	23.3930
gg[cccuuuuuuuuuuuuccc]g	chr7:127975841-127976150(-)$1	309	245	268	22.8418
eeeddddtttttttttttddddE	chr19:54705253-54705497(+)$1	244	150	173	19.2551
[cccxxxxxxxxxxxxxxxcccf	chr20:13756432-13756857(-)$1	425	297	320	18.9585
eeeewwwwwwwwwwwwwweeeee	chr7:148514851-148515175(-)$1	324	301	324	22.0903
FFFcccvvvvvvvvvvvvvccc:	chr1:212506776-212507049(+)$1	273	184	207	19.7805
eee[bbvvvvvvvvvvvvvbbee	chr1:156713354-156713635(-)$1	281	56	79	21.2526
!eeeeevvvvvvvvvvvvveeee	chr7:139060731-139060974(+)$1	243	48	71	22.5847
[bb[awwwwwwwwwwwwwwa]bb	chr5:10391600-10391949(+)$1	349	63	86	21.1698
gggggggtttttttttttggggg	chr1:154148588-154148825(-)$1	237	135	158	20.0952
::dddduuuuuuuuuuuudddd:	chr1:52305891-52306157(-)$1	266	13	36	19.5889
ddd[bbwwwwwwwwwwwwwwbb]	chr19:46195043-46195294(-)$1	251	176	199	20.4233
=eeeeeuuuuuuuuuuuueeeee	chr6:99849282-99849547(-)$1	265	186	209	23.2330
!eeeeexxxxxxxxxxxxxxxee	chr15:69072327-69072582(-)$1	255	164	187	18.7160
eeeeexxxxxxxxxxxxxxxeee	chr1:38166030-38166319(+)$1	289	127	150	18.8809
!eeeeeuuuuuuuuuuuueeeee	chr1:200587354-200587684(-)$1	330	70	93	23.5061
(((cccuuuuuuuuuuuuccc00	chr12:104333204-104333473(+)$1	269	63	86	20.0053
#cccxxxxxxxxxxxxxxxccc2	chr11:129991472-129991771(+)$1	299	213	236	18.8910
gggggggtttttttttttggggg	chr11:32610039-32610323(+)$1	284	183	206	20.0952
ggggggvvvvvvvvvvvvvgggg	chrX:13337393-13337662(+)$1	269	93	116	21.6086
ddd!!bbtttttttttttbb22d	chr4:2930080-2930394(+)$1	314	256	279	19.2722
"""bbvvvvvvvvvvvvvbb22d	chr10:70098299-70098546(+)$1	247	54	77	20.3667
[eeeeeuuuuuuuuuuuueeeee	chr8:30945292-30945537(+)$1	245	39	62	23.4595
!eeeeeuuuuuuuuuuuueeeee	chr7:91708445-91708751(+)$1	306	95	118	23.5061
!!dddduuuuuuuuuuuudddd7	chr1:52305957-52306232(-)$1	275	88	111	22.1726
!!ddddtttttttttttdddd22	chr16:2809473-2809722(+)$1	249	84	107	20.1581
e[dddduuuuuuuuuuuudddd]	chr2:170668076-170668357(+)$1	281	200	223	22.3111
gggyyyyyyyyyyyyyyyygggg	chr12:53865370-53865612(+)$1	242	197	220	21.2307
eeeeexxxxxxxxxxxxxxxeee	chr5:77071906-77072206(-)$1	300	97	120	18.8809
eee!!bbtttttttttttbb444	chr12:104340317-104340545(+)$1	228	142	165	20.1464
::cccvvvvvvvvvvvvvcccff	chr17:57767890-57768173(+)$1	283	26	49	19.8692
eeeewwwwwwwwwwwwwweeeee	chr15:40477346-40477622(+)$1	276	35	58	22.0903
ffffffuuuuuuuuuuuufffff	chr1:24021077-24021335(+)$1	258	132	155	21.4736
[eeeeevvvvvvvvvvvvveeee	chr2:47388761-47389098(-)$1	337	209	232	22.5381
h[dddduuuuuuuuuuuudddd]	chr17:34171852-34172137(+)$1	285	191	214	22.1772
:ddddvvvvvvvvvvvvvdddd:	chr4:152024089-152024383(+)$1	294	160	183	19.6142
!eeeeeyyyyyyyyyyyyyyyye	chr15:40488685-40489029(+)$1	344	163	186	20.7616
ffyyyyyyyyyyyyyyyyfffff	chr1:150198838-150199203(-)$1	365	215	238	19.9058
dd!!bbuuuuuuuuuuuubb22d	chr5:177019211-177019501(+)$1	290	193	216	21.2218
!!cccwwwwwwwwwwwwwwccc2	chr9:131456193-131456418(+)$1	225	120	143	22.4771
[bb[ccctttttttttttccc]b	chr9:100774602-100774807(+)$1	205	139	162	20.3210
:eeeeettttttttttteeeee:	chr1:150192894-150193164(-)$1	270	37	60	19.1928
iiyyyyyyyyyyyyyyyyiiiii	chr13:107211782-107212097(-)$1	315	25	48	20.3134
ffffwwwwwwwwwwwwwwfffff	chr2:233697466-233697806(+)$1	340	166	189	20.8737
!eeeeettttttttttteeeee2	chr2:27607806-27608056(-)$1	250	156	179	21.1389
ffyyyyyyyyyyyyyyyyfffff	chr2:168726328-168726589(-)$1	261	227	250	19.9058
ggggggvvvvvvvvvvvvvgggg	chr11:32610123-32610390(+)$1	267	4	27	21.6086
hhhhhhvvvvvvvvvvvvvhhhh	chr12:95879554-95879797(+)$1	243	52	75	19.5811
[eeeeeuuuuuuuuuuuueeeee	chr17:73664515-73664809(+)$1	294	229	252	23.4595
=======ttttttttttt=====	chr8:124381972-124382290(-)$1	318	258	281	20.3235
:eeeeeuuuuuuuuuuuueeeee	chr1:70694053-70694359(+)$1	306	283	306	22.3240
[ddddwwwwwwwwwwwwwwdddd	chr10:17275505-17275784(+)$1	279	4	27	21.8487
ggggggvvvvvvvvvvvvvgggg	chr13:107196274-107196609(-)$1	335	287	310	21.6086
'cccxxxxxxxxxxxxxxxccc8	chr2:232325323-232325598(-)$1	275	203	226	18.0150
!!cccyyyyyyyyyyyyyyyycc	chr9:127998783-127999061(-)$1	278	241	264	21.1814

#otherMatches

#Seq PSSM
AAGAAAAAGGGAAGAAAAUCUGA	chr14:102449685-102449999(+)$1	314	116	139	22.1170
agguaagggaaagugagaagcag	chr14:39649884-39650194(+)$1	310	140	163	17.9689
UGUCACUCCAGGCAAAAAGGCAG	chr2:232326571-232326829(-)$1	258	211	234	20.8737
aaggagagguaaaagaaAAUUUG	chr9:131456218-131456421(+)$1	203	95	118	22.4771
AGCGGCAAGAAGAAGAGCGCCGU	chrX:118971671-118972060(-)$1	389	138	161	23.3930
AAGAGGUAAGCAGCUCAUCCUGU	chr7:127975841-127976150(-)$1	309	245	268	22.8418
CCUGGCCAAGAUCCGCAAGGCCG	chr19:54705253-54705497(+)$1	244	150	173	19.2551
GCUUGGAGAGAAUUAGAUAAAGA	chr20:13756432-13756857(-)$1	425	297	320	18.9585
GGUUAGUUUCAGUAUAAAGACCA	chr7:148514851-148515175(-)$1	324	301	324	22.0903
UUGGCAGUUUUUAUAUUUAUGCU	chr1:212506776-212507049(+)$1	273	184	207	19.7805
AGGUGGAAAAGAAUAGCACCCCC	chr1:156713354-156713635(-)$1	281	56	79	21.2526
GAAUGUUAUUAACUCUUCUAUAU	chr7:139060731-139060974(+)$1	243	48	71	22.5847
GAGGAAAUGGUGCAGAAAAUGUU	chr5:10391600-10391949(+)$1	349	63	86	21.1698
UCCAGCUGGUUGAAGAAGAGCUG	chr1:154148588-154148825(-)$1	237	135	158	20.0952
AGACCUAAGUAAUAUGGAAGGUA	chr1:52305891-52306157(-)$1	266	13	36	19.5889
GGGAAUGAGGUUGAGGGUGGAUA	chr19:46195043-46195294(-)$1	251	176	199	20.4233
AGUUUUAGAACCAAAAAAAGAGC	chr6:99849282-99849547(-)$1	265	186	209	23.2330
UGGAAUAACCUAUUUUGAAAAAU	chr15:69072327-69072582(-)$1	255	164	187	18.7160
GAAGAAAAUGAACGUAAGAAUCU	chr1:38166030-38166319(+)$1	289	127	150	18.8809
CUUACCCCUAAUCCUGUAGGUAG	chr1:200587354-200587684(-)$1	330	70	93	23.5061
AAUACUAUAAUAACUUCAGGUUG	chr12:104333204-104333473(+)$1	269	63	86	20.0053
gaCUAUGAUGUUUAUAAAAGGUA	chr11:129991472-129991771(+)$1	299	213	236	18.8910
UGUGAAAAGCUGGUCAAAUUUCG	chr11:32610039-32610323(+)$1	284	183	206	20.0952
UGGUGUAUCCAUCUCUUCGACAC	chrX:13337393-13337662(+)$1	269	93	116	21.6086
GGAAUGCAAAAAAGCCAAGCCCU	chr4:2930080-2930394(+)$1	314	256	279	19.2722
AGACCAAUAGGAGGAAGAGGGGG	chr10:70098299-70098546(+)$1	247	54	77	20.3667
AUUCUAAAUGCUUAAAAAUGGAA	chr8:30945292-30945537(+)$1	245	39	62	23.4595
AUAUUGGACAGAAGACAUCAAUG	chr7:91708445-91708751(+)$1	306	95	118	23.5061
AGACCUAAGUAAUAUGGAAGGUA	chr1:52305957-52306232(-)$1	275	88	111	22.1726
GUCUUCCUUCAGGUCUCGAAGUA	chr16:2809473-2809722(+)$1	249	84	107	20.1581
CAAUUUUUUAUUCAUUUUAAAUA	chr2:170668076-170668357(+)$1	281	200	223	22.3111
GGCUCAAUAUCUAAUCAAUGUCA	chr12:53865370-53865612(+)$1	242	197	220	21.2307
CCCUCCUUCUCGCGGCGCUCGAG	chr5:77071906-77072206(-)$1	300	97	120	18.8809
CUUCGACGAAUUAAGGUAGUAUU	chr12:104340317-104340545(+)$1	228	142	165	20.1464
AAGGCUUUUCCACUUUCUGCCAU	chr17:57767890-57768173(+)$1	283	26	49	19.8692
AGGACUCCAAAAUCCAUUUCCUC	chr15:40477346-40477622(+)$1	276	35	58	22.0903
AUCCAGGAACACAUCGAUCUGGG	chr1:24021077-24021335(+)$1	258	132	155	21.4736
GAUGGUGAUGGUCAAGUAAACUA	chr2:47388761-47389098(-)$1	337	209	232	22.5381
UGAGUAUUAGAAUGUGUUUAUUA	chr17:34171852-34172137(+)$1	285	191	214	22.1772
CCUCACACAACACAACCUUGAGU	chr4:152024089-152024383(+)$1	294	160	183	19.6142
GCGUCUGAGGAGAAGAAAGAGAA	chr15:40488685-40489029(+)$1	344	163	186	20.7616
GGGAGAAGAGGAAGUGGGCCUCU	chr1:150198838-150199203(-)$1	365	215	238	19.9058
GGGGCGGGGAGGAAGGGGCGAGU	chr5:177019211-177019501(+)$1	290	193	216	21.2218
aaggagagguaaaagaaAAUUUG	chr9:131456193-131456418(+)$1	225	120	143	22.4771
GAUGAGGAUGAAGGUGGGCCUAA	chr9:100774602-100774807(+)$1	205	139	162	20.3210
AAAAUGUAACCAAUCCUCAUUUG	chr1:150192894-150193164(-)$1	270	37	60	19.1928
UAGUUUUGUUUAAAUUUAUAGUU	chr13:107211782-107212097(-)$1	315	25	48	20.3134
CUGCGGAUGGAAGAGGAGGCAGC	chr2:233697466-233697806(+)$1	340	166	189	20.8737
GCUGCUGACACGCUACGGGCAGA	chr2:27607806-27608056(-)$1	250	156	179	21.1389
ACACAGUCCCACAUAUACGUCUU	chr2:168726328-168726589(-)$1	261	227	250	19.9058
AUACUUGUGUAGAUGUUGAAAGU	chr11:32610123-32610390(+)$1	267	4	27	21.6086
AAUUUUAUUUUUAACUACAGAAG	chr12:95879554-95879797(+)$1	243	52	75	19.5811
AUUUCAUUUGUCAGAUUUUGGAA	chr17:73664515-73664809(+)$1	294	229	252	23.4595
GAUGUAAUUAUAUUAGCUUUAUA	chr8:124381972-124382290(-)$1	318	258	281	20.3235
UUAACAUUUUUAAACCCUUGUUA	chr1:70694053-70694359(+)$1	306	283	306	22.3240
AAUCUAAGACAAAUAAAUGAGAU	chr10:17275505-17275784(+)$1	279	4	27	21.8487
ACAAAGAAAAAUGGAAAAACUUU	chr13:107196274-107196609(-)$1	335	287	310	21.6086
GAAGAGGAGGAGGAAGGUACUUA	chr2:232325323-232325598(-)$1	275	203	226	18.0150
UUGUUAGGAAAAAAUUGAAAGAA	chr9:127998783-127999061(-)$1	278	241	264	21.1814

#DB
.(((..............)))..	chr14:102449685-102449999(+)$1	1	116	139	22.1170
..((...............))..	chr14:39649884-39650194(+)$1	1	140	163	17.9689
((((..............)))))	chr2:232326571-232326829(-)$1	1	211	234	20.8737
..(((..............))).	chr9:131456218-131456421(+)$1	1	95	118	22.4771
.(((((............)))))	chrX:118971671-118972060(-)$1	1	138	161	23.3930
((.(((............))).)	chr7:127975841-127976150(-)$1	1	245	268	22.8418
)))((((...........)))))	chr19:54705253-54705497(+)$1	1	150	173	19.2551
.(((...............))))	chr20:13756432-13756857(-)$1	1	297	320	18.9585
((((..............)))))	chr7:148514851-148515175(-)$1	1	301	324	22.0903
)))(((.............))).	chr1:212506776-212507049(+)$1	1	184	207	19.7805
(((.((.............))))	chr1:156713354-156713635(-)$1	1	56	79	21.2526
.(((((.............))))	chr7:139060731-139060974(+)$1	1	48	71	22.5847
.((.(..............).))	chr5:10391600-10391949(+)$1	1	63	86	21.1698
(((((((...........)))))	chr1:154148588-154148825(-)$1	1	135	158	20.0952
..((((............)))).	chr1:52305891-52306157(-)$1	1	13	36	19.5889
(((.((..............)).	chr19:46195043-46195294(-)$1	1	176	199	20.4233
)(((((............)))))	chr6:99849282-99849547(-)$1	1	186	209	23.2330
.(((((...............))	chr15:69072327-69072582(-)$1	1	164	187	18.7160
(((((...............)))	chr1:38166030-38166319(+)$1	1	127	150	18.8809
.(((((............)))))	chr1:200587354-200587684(-)$1	1	70	93	23.5061
...(((............)))..	chr12:104333204-104333473(+)$1	1	63	86	20.0053
.(((...............))).	chr11:129991472-129991771(+)$1	1	213	236	18.8910
(((((((...........)))))	chr11:32610039-32610323(+)$1	1	183	206	20.0952
((((((.............))))	chrX:13337393-13337662(+)$1	1	93	116	21.6086
(((..((...........))..)	chr4:2930080-2930394(+)$1	1	256	279	19.2722
...((.............))..)	chr10:70098299-70098546(+)$1	1	54	77	20.3667
.(((((............)))))	chr8:30945292-30945537(+)$1	1	39	62	23.4595
.(((((............)))))	chr7:91708445-91708751(+)$1	1	95	118	23.5061
..((((............)))).	chr1:52305957-52306232(-)$1	1	88	111	22.1726
..((((...........))))..	chr16:2809473-2809722(+)$1	1	84	107	20.1581
(.((((............)))).	chr2:170668076-170668357(+)$1	1	200	223	22.3111
(((................))))	chr12:53865370-53865612(+)$1	1	197	220	21.2307
(((((...............)))	chr5:77071906-77072206(-)$1	1	97	120	18.8809
(((..((...........))...	chr12:104340317-104340545(+)$1	1	142	165	20.1464
..(((.............)))((	chr17:57767890-57768173(+)$1	1	26	49	19.8692
((((..............)))))	chr15:40477346-40477622(+)$1	1	35	58	22.0903
((((((............)))))	chr1:24021077-24021335(+)$1	1	132	155	21.4736
.(((((.............))))	chr2:47388761-47389098(-)$1	1	209	232	22.5381
(.((((............)))).	chr17:34171852-34172137(+)$1	1	191	214	22.1772
.((((.............)))).	chr4:152024089-152024383(+)$1	1	160	183	19.6142
.(((((................)	chr15:40488685-40489029(+)$1	1	163	186	20.7616
((................)))))	chr1:150198838-150199203(-)$1	1	215	238	19.9058
((..((............))..)	chr5:177019211-177019501(+)$1	1	193	216	21.2218
..(((..............))).	chr9:131456193-131456418(+)$1	1	120	143	22.4771
.((.(((...........))).)	chr9:100774602-100774807(+)$1	1	139	162	20.3210
.(((((...........))))).	chr1:150192894-150193164(-)$1	1	37	60	19.1928
((................)))))	chr13:107211782-107212097(-)$1	1	25	48	20.3134
((((..............)))))	chr2:233697466-233697806(+)$1	1	166	189	20.8737
.(((((...........))))).	chr2:27607806-27608056(-)$1	1	156	179	21.1389
((................)))))	chr2:168726328-168726589(-)$1	1	227	250	19.9058
((((((.............))))	chr11:32610123-32610390(+)$1	1	4	27	21.6086
((((((.............))))	chr12:95879554-95879797(+)$1	1	52	75	19.5811
.(((((............)))))	chr17:73664515-73664809(+)$1	1	229	252	23.4595
(((((((...........)))))	chr8:124381972-124382290(-)$1	1	258	281	20.3235
.(((((............)))))	chr1:70694053-70694359(+)$1	1	283	306	22.3240
.((((..............))))	chr10:17275505-17275784(+)$1	1	4	27	21.8487
((((((.............))))	chr13:107196274-107196609(-)$1	1	287	310	21.6086
.(((...............))).	chr2:232325323-232325598(-)$1	1	203	226	18.0150
..(((................))	chr9:127998783-127999061(-)$1	1	241	264	21.1814

#PSSM
! : 0.20	e : 0.13	g : 0.11	[ : 0.11	f : 0.08	: : 0.08	" : 0.05	d : 0.05	= : 0.03	h : 0.03	F : 0.01	( : 0.01	# : 0.01	i : 0.01	' : 0.01	
e : 0.33	g : 0.11	! : 0.10	f : 0.08	d : 0.08	c : 0.06	b : 0.03	: : 0.03	[ : 0.03	F : 0.01	( : 0.01	" : 0.01	i : 0.01	h : 0.01	= : 0.01	
e : 0.33	d : 0.15	c : 0.13	g : 0.10	b : 0.05	f : 0.05	y : 0.05	[ : 0.01	F : 0.01	( : 0.01	" : 0.01	! : 0.01	h : 0.01	= : 0.01	
e : 0.28	c : 0.18	d : 0.13	g : 0.08	[ : 0.06	y : 0.06	f : 0.05	! : 0.05	b : 0.03	h : 0.01	= : 0.01	
e : 0.25	c : 0.13	d : 0.13	w : 0.08	g : 0.08	x : 0.06	b : 0.06	y : 0.06	! : 0.03	a : 0.01	f : 0.01	h : 0.01	= : 0.01	
e : 0.22	w : 0.15	x : 0.10	d : 0.10	b : 0.08	g : 0.08	y : 0.08	c : 0.06	v : 0.05	f : 0.01	h : 0.01	= : 0.01	
u : 0.25	v : 0.18	w : 0.16	x : 0.11	y : 0.10	t : 0.05	g : 0.03	b : 0.03	d : 0.01	c : 0.01	= : 0.01	
u : 0.25	v : 0.18	w : 0.16	t : 0.16	x : 0.11	y : 0.10	
u : 0.25	v : 0.18	w : 0.16	t : 0.16	x : 0.11	y : 0.10	
u : 0.25	v : 0.18	w : 0.16	t : 0.16	x : 0.11	y : 0.10	
u : 0.25	v : 0.18	w : 0.16	t : 0.16	x : 0.11	y : 0.10	
u : 0.25	v : 0.18	w : 0.16	t : 0.16	x : 0.11	y : 0.10	
u : 0.25	v : 0.18	w : 0.16	t : 0.16	x : 0.11	y : 0.10	
u : 0.25	v : 0.18	w : 0.16	t : 0.16	x : 0.11	y : 0.10	
u : 0.25	v : 0.18	w : 0.16	t : 0.16	x : 0.11	y : 0.10	
u : 0.25	v : 0.18	w : 0.16	t : 0.16	x : 0.11	y : 0.10	
u : 0.25	v : 0.18	w : 0.16	t : 0.16	x : 0.11	y : 0.10	
u : 0.25	v : 0.18	w : 0.16	x : 0.11	t : 0.11	y : 0.10	e : 0.03	d : 0.01	
e : 0.18	v : 0.13	x : 0.11	d : 0.11	c : 0.08	f : 0.08	w : 0.08	b : 0.06	y : 0.05	g : 0.03	i : 0.01	= : 0.01	
e : 0.22	c : 0.18	d : 0.13	b : 0.10	g : 0.10	f : 0.08	x : 0.05	y : 0.03	a : 0.01	w : 0.01	i : 0.01	h : 0.01	= : 0.01	
e : 0.25	c : 0.18	d : 0.13	g : 0.10	f : 0.08	b : 0.05	2 : 0.05	y : 0.03	] : 0.01	x : 0.01	4 : 0.01	i : 0.01	h : 0.01	= : 0.01	
e : 0.28	c : 0.11	d : 0.11	f : 0.10	g : 0.10	2 : 0.08	] : 0.03	b : 0.03	3 : 0.01	0 : 0.01	4 : 0.01	y : 0.01	i : 0.01	h : 0.01	= : 0.01	
e : 0.27	f : 0.11	g : 0.11	2 : 0.10	: : 0.06	d : 0.06	] : 0.05	b : 0.03	3 : 0.01	E : 0.01	0 : 0.01	7 : 0.01	4 : 0.01	i : 0.01	h : 0.01	= : 0.01	8 : 0.01	c : 0.01	

#score	1235.1384829470971
#seq	59
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_UTR_m3_run2.txt

#BEAR
ffffffpppppppffffff:	chr2:44396119-44396417(+)$1	298	247	267	13.5913
bbbcccpppppppccc]bb3	chr1:202304750-202305024(-)$1	274	189	209	14.0136
b!!cccpppppppccc]bb]	chr3:49507704-49507971(+)$1	267	200	220	15.0085
a!!cccpppppppccc22a]	chr17:43225854-43226086(+)$1	232	105	125	15.5378
ee[cccpppppppccc]eee	chr18:77748342-77748627(-)$1	285	73	93	15.5300
eee[bbpppppppbb]eeee	chr17:73401487-73401824(-)$1	337	137	157	14.0975
e[ddddpppppppdddd]ee	chr19:974785-975090(+)$1	305	49	69	14.6559
!eeeeepppppppeeeee]b	chr16:15736774-15737038(-)$1	264	36	56	14.0942
ggddddpppppppdddd]gg	chr2:20550306-20550564(-)$1	258	150	170	14.8169
[eeeeepppppppeeeee22	chr8:98788087-98788348(+)$1	261	146	166	14.0447
ff[cccpppppppccc]fff	chr1:234509875-234510173(+)$1	298	207	227	15.7810
c[ddddpppppppdddd]cc	chr4:57301455-57301780(-)$1	325	298	318	14.7200
ff[cccpppppppccc]fff	chr16:3777285-3777562(-)$1	277	42	62	15.7810
gg[cccpppppppccc]ggg	chr22:21998435-21998663(+)$1	228	133	153	15.9447
ffffffpppppppffffff]	chr11:57529211-57529608(+)$1	397	296	316	14.5307
cc[cccpppppppccc]ccc	chr1:87380370-87380636(+)$1	266	133	153	15.4631
fff[bbpppppppbb]ffff	chr16:447639-447889(+)$1	250	7	27	14.3016
ffffffpppppppffffff:	chr19:40871356-40871597(+)$1	241	187	207	13.5913
dd[cccpppppppccc]ddd	chr9:100818962-100819254(+)$1	292	235	255	14.8123
a!!cccpppppppccc22a]	chr19:1249810-1250086(+)$1	276	147	167	15.5378
ccc[bbpppppppbb]ccc2	chr12:49350994-49351281(-)$1	287	152	172	13.7846
ee[cccpppppppccc]eee	chr7:140396527-140396743(+)$1	216	20	40	15.5300
ccddddpppppppdddd]cc	chr14:77924354-77924698(+)$1	344	187	207	14.4764
ggggggpppppppggggggg	chr12:58145880-58146155(-)$1	275	130	150	15.0399
d[ddddpppppppdddd]dd	chr1:205718996-205719253(-)$1	257	54	74	14.3422
ff[cccpppppppccc]fff	chr6:31704106-31704382(-)$1	276	85	105	15.7810
a!!cccpppppppccc22a]	chr17:43225829-43226054(+)$1	225	130	150	15.5378
ggggggpppppppggggggg	chr16:730440-730711(+)$1	271	49	69	15.0399
ggggggpppppppggggggg	chr16:730351-730640(+)$1	289	138	158	15.0399
ff[cccpppppppcccffff	chr4:80994086-80994359(-)$1	273	17	37	15.5238
f[ddddpppppppdddd22f	chr20:43530070-43530299(+)$1	229	124	144	14.5794
gggg[apppppppa]ggggg	chr15:64752858-64753145(+)$1	287	79	99	14.7676
ffffffpppppppffffff]	chr14:50360162-50360445(+)$1	283	199	219	14.5307
ffffffpppppppffffffb	chr5:137688347-137688603(+)$1	256	62	82	14.2262
feeeeepppppppeeeee44	chr16:2301217-2301494(-)$1	277	207	227	14.1806
!!ddddpppppppdddd]dd	chr7:150779755-150780105(-)$1	350	321	341	14.5177
iiiiiipppppppiiiiiii	chr17:40761127-40761392(-)$1	265	17	37	14.7471
deeeeepppppppeeeee]d	chr12:120907161-120907575(-)$1	414	69	89	13.9912
[bb[bbpppppppbb]bb]b	chr7:65338179-65338425(+)$1	246	56	76	12.8307
ggg[bbpppppppbb22ggg	chr15:66679268-66679550(+)$1	282	139	159	14.2666
b[ddddpppppppdddd]bb	chr14:50359877-50360216(+)$1	339	226	246	14.0674
!!ddddpppppppdddd22c	chrX:62570704-62570967(-)$1	263	7	27	14.5677
deeeeepppppppeeeee]d	chr4:183836536-183836829(-)$1	293	119	139	13.9912
!!ddddpppppppdddd22c	chr2:97535592-97535857(-)$1	265	186	206	14.5677
eee[bbpppppppbb]eeee	chr10:98346473-98346743(-)$1	270	68	88	14.0975
ff[abbpppppppbb]a]ff	chr1:116926533-116926823(+)$1	290	103	123	14.5906
g!!cccpppppppccc333g	chr17:46128066-46128360(+)$1	294	53	73	16.0311
iiiiiipppppppiiiiiii	chr19:50168666-50168911(-)$1	245	158	178	14.7471
d"""bbpppppppbb333dd	chr3:100428849-100429132(+)$1	283	50	70	14.0253
ffffffpppppppffffff]	chr15:43477592-43477901(+)$1	309	180	200	14.5307
""ddddpppppppdddd]cc	chr8:29931455-29931673(-)$1	218	181	201	14.5430
bb[cccpppppppccc]bbB	chr8:145159357-145159696(+)$1	339	0	20	13.6442
ff[cccpppppppccc22ff	chrX:20284830-20285182(-)$1	352	208	228	15.5525
ee[a[apppppppa]a]eee	chr7:77166502-77166764(+)$1	262	93	113	14.5521
e[ddddpppppppdddd22e	chr15:79165199-79165501(+)$1	302	257	277	14.4860
ggggggpppppppggggggg	chr11:118656974-118657322(-)$1	348	2	22	15.0399
ggggggpppppppggggggg	chr2:20251173-20251423(-)$1	250	165	185	15.0399
eeeebbpppppppbb]eeee	chr10:129924405-129924702(-)$1	297	170	190	14.0031
[eeeeepppppppeeeee22	chr8:98788044-98788287(+)$1	243	189	209	14.0447
!!ddddpppppppdddd22d	chr20:3740627-3740930(-)$1	303	196	216	14.4683
ffffffpppppppffffff7	chr7:150028704-150029008(+)$1	304	40	60	13.8710
ffffffpppppppffffffb	chr5:179132578-179132791(+)$1	213	90	110	14.2262
ee[cccpppppppccc]eee	chr19:36486052-36486353(+)$1	301	185	205	15.5300
ggggggpppppppggggggg	chr2:242707710-242707991(+)$1	281	177	197	15.0399

#otherMatches

#Seq PSSM
GGGCGCGAGCGAGGCGCCCU	chr2:44396119-44396417(+)$1	298	247	267	13.5913
AGAGCCACCCCCAGGCAUCA	chr1:202304750-202305024(-)$1	274	189	209	14.0136
CUUGGGCCCCCAUCCCUGCU	chr3:49507704-49507971(+)$1	267	200	220	15.0085
gaaCUGAGCAGAGCAGAGCA	chr17:43225854-43226086(+)$1	232	105	125	15.5378
GCCGGGUGGCAGUCCCAGCG	chr18:77748342-77748627(-)$1	285	73	93	15.5300
uguggcggugacggcggcgg	chr17:73401487-73401824(-)$1	337	137	157	14.0975
CUGUUAACUCCGAUGAUUGU	chr19:974785-975090(+)$1	305	49	69	14.6559
gaagugaagggugcgcuugg	chr16:15736774-15737038(-)$1	264	36	56	14.0942
CGCCGUGUGCCCAACGGUCG	chr2:20550306-20550564(-)$1	258	150	170	14.8169
AGCGAUGAAGAUGGUCGCGC	chr8:98788087-98788348(+)$1	261	146	166	14.0447
CUCAAUGCAAGAAGUUAAGA	chr1:234509875-234510173(+)$1	298	207	227	15.7810
GUCUCCAUCUCUCGGAGCCG	chr4:57301455-57301780(-)$1	325	298	318	14.7200
UUGGUUUUUUUUUGGCGGGG	chr16:3777285-3777562(-)$1	277	42	62	15.7810
UAAAGAAUGUUGGUCUAUGA	chr22:21998435-21998663(+)$1	228	133	153	15.9447
CCACAUUUGAGGUGUGUGGC	chr11:57529211-57529608(+)$1	397	296	316	14.5307
UCGGCUGAGGAGAAGCGGAC	chr1:87380370-87380636(+)$1	266	133	153	15.4631
CCGGCCgggguggggguggg	chr16:447639-447889(+)$1	250	7	27	14.3016
UCCCUGCCCUACACGGGGAC	chr19:40871356-40871597(+)$1	241	187	207	13.5913
CAAGCGCAUGAUCCGCAUGG	chr9:100818962-100819254(+)$1	292	235	255	14.8123
GACGGCACCCAGCGCCACCA	chr19:1249810-1250086(+)$1	276	147	167	15.5378
GCGGCGGCCGCAGCGGCGCA	chr12:49350994-49351281(-)$1	287	152	172	13.7846
UCCGCUCUGACUCGGCUGGC	chr7:140396527-140396743(+)$1	216	20	40	15.5300
UGGGGUGAGGGAGACCCACG	chr14:77924354-77924698(+)$1	344	187	207	14.4764
GGGCCGUAGGAACCGGCUCC	chr12:58145880-58146155(-)$1	275	130	150	15.0399
CAUCGGCUGAAGUUCGGGGG	chr1:205718996-205719253(-)$1	257	54	74	14.3422
GCCCGGGAGAGGACCGAGCU	chr6:31704106-31704382(-)$1	276	85	105	15.7810
gaaCUGAGCAGAGCAGAGCA	chr17:43225829-43226054(+)$1	225	130	150	15.5378
CUUGGGAGCGGAGCCCAGGC	chr16:730440-730711(+)$1	271	49	69	15.0399
CUUGGGAGCGGAGCCCAGGC	chr16:730351-730640(+)$1	289	138	158	15.0399
GCGUGGCUUCUCUCCAGCCG	chr4:80994086-80994359(-)$1	273	17	37	15.5238
GCUGGUACAGAAAGCCAAAC	chr20:43530070-43530299(+)$1	229	124	144	14.5794
ccgcgggaacggauggcggC	chr15:64752858-64753145(+)$1	287	79	99	14.7676
GAGGCUUCGUUUCGGUUUCG	chr14:50360162-50360445(+)$1	283	199	219	14.5307
CGGGCGGAUCGGGCGCUUgg	chr5:137688347-137688603(+)$1	256	62	82	14.2262
CGUGGGGUCAGGACCCGCGG	chr16:2301217-2301494(-)$1	277	207	227	14.1806
AGGACGGUGGGAGCGUCGCG	chr7:150779755-150780105(-)$1	350	321	341	14.5177
CACGGCCCCGGAUGUUGUGG	chr17:40761127-40761392(-)$1	265	17	37	14.7471
GCCUCGGAGCCCGCGGGGAC	chr12:120907161-120907575(-)$1	414	69	89	13.9912
ggcggcggugguggcggcgg	chr7:65338179-65338425(+)$1	246	56	76	12.8307
CUGCCGAACCGCACGUUCAG	chr15:66679268-66679550(+)$1	282	139	159	14.2666
UCCCUCGCGGUGAGAGGAAG	chr14:50359877-50360216(+)$1	339	226	246	14.0674
GUCAGCCGCCACUGCUGCAG	chrX:62570704-62570967(-)$1	263	7	27	14.5677
UUCCUGCAAGAAACGGGACG	chr4:183836536-183836829(-)$1	293	119	139	13.9912
gacggcggucagagccgaac	chr2:97535592-97535857(-)$1	265	186	206	14.5677
cgcggcggaggcggcggcgg	chr10:98346473-98346743(-)$1	270	68	88	14.0975
UUGGACGUGAUAAGUAUGAG	chr1:116926533-116926823(+)$1	290	103	123	14.5906
GAAUCUACAGAGAGGACAAC	chr17:46128066-46128360(+)$1	294	53	73	16.0311
GCCGACGCUGGAGGUCGGCU	chr19:50168666-50168911(-)$1	245	158	178	14.7471
CAAGCGUUUGGAUUGAGAGG	chr3:100428849-100429132(+)$1	283	50	70	14.0253
AGGAGCUGCGGUUGCUCCUG	chr15:43477592-43477901(+)$1	309	180	200	14.5307
CCCACAGUUGAAAUGUGUUG	chr8:29931455-29931673(-)$1	218	181	201	14.5430
CGGGCCAUUCAGAggcgcgg	chr8:145159357-145159696(+)$1	339	0	20	13.6442
GCGGGCGUCUCUGGCCAGGC	chrX:20284830-20285182(-)$1	352	208	228	15.5525
GGGGGUUGGGGUUGGCGCUA	chr7:77166502-77166764(+)$1	262	93	113	14.5521
CGAGGUGAUUGAGGCUUGAG	chr15:79165199-79165501(+)$1	302	257	277	14.4860
AAAAGAUGAGAAUUCUUUUA	chr11:118656974-118657322(-)$1	348	2	22	15.0399
GAACCGCAGUGACCGGUUCU	chr2:20251173-20251423(-)$1	250	165	185	15.0399
GGGUGCAGCGAACGCGACCC	chr10:129924405-129924702(-)$1	297	170	190	14.0031
AGCGAUGAAGAUGGUCGCGC	chr8:98788044-98788287(+)$1	243	189	209	14.0447
ACAAGGGUAAGUGCCUUCCU	chr20:3740627-3740930(-)$1	303	196	216	14.4683
CAUACACCUUGUCUGUGUGG	chr7:150028704-150029008(+)$1	304	40	60	13.8710
uuuauguguagaucauggaa	chr5:179132578-179132791(+)$1	213	90	110	14.2262
CCGGGCGUGGGAAGCCGGGC	chr19:36486052-36486353(+)$1	301	185	205	15.5300
GGCUCUGCUGAAUGGAGCCG	chr2:242707710-242707991(+)$1	281	177	197	15.0399

#DB
((((((.......)))))).	chr2:44396119-44396417(+)$1	1	247	267	13.5913
((((((.......))).)).	chr1:202304750-202305024(-)$1	1	189	209	14.0136
(..(((.......))).)).	chr3:49507704-49507971(+)$1	1	200	220	15.0085
(..(((.......)))..).	chr17:43225854-43226086(+)$1	1	105	125	15.5378
((.(((.......))).)))	chr18:77748342-77748627(-)$1	1	73	93	15.5300
(((.((.......)).))))	chr17:73401487-73401824(-)$1	1	137	157	14.0975
(.((((.......)))).))	chr19:974785-975090(+)$1	1	49	69	14.6559
.(((((.......))))).)	chr16:15736774-15737038(-)$1	1	36	56	14.0942
((((((.......)))).))	chr2:20550306-20550564(-)$1	1	150	170	14.8169
.(((((.......)))))..	chr8:98788087-98788348(+)$1	1	146	166	14.0447
((.(((.......))).)))	chr1:234509875-234510173(+)$1	1	207	227	15.7810
(.((((.......)))).))	chr4:57301455-57301780(-)$1	1	298	318	14.7200
((.(((.......))).)))	chr16:3777285-3777562(-)$1	1	42	62	15.7810
((.(((.......))).)))	chr22:21998435-21998663(+)$1	1	133	153	15.9447
((((((.......)))))).	chr11:57529211-57529608(+)$1	1	296	316	14.5307
((.(((.......))).)))	chr1:87380370-87380636(+)$1	1	133	153	15.4631
(((.((.......)).))))	chr16:447639-447889(+)$1	1	7	27	14.3016
((((((.......)))))).	chr19:40871356-40871597(+)$1	1	187	207	13.5913
((.(((.......))).)))	chr9:100818962-100819254(+)$1	1	235	255	14.8123
(..(((.......)))..).	chr19:1249810-1250086(+)$1	1	147	167	15.5378
(((.((.......)).))).	chr12:49350994-49351281(-)$1	1	152	172	13.7846
((.(((.......))).)))	chr7:140396527-140396743(+)$1	1	20	40	15.5300
((((((.......)))).))	chr14:77924354-77924698(+)$1	1	187	207	14.4764
((((((.......)))))))	chr12:58145880-58146155(-)$1	1	130	150	15.0399
(.((((.......)))).))	chr1:205718996-205719253(-)$1	1	54	74	14.3422
((.(((.......))).)))	chr6:31704106-31704382(-)$1	1	85	105	15.7810
(..(((.......)))..).	chr17:43225829-43226054(+)$1	1	130	150	15.5378
((((((.......)))))))	chr16:730440-730711(+)$1	1	49	69	15.0399
((((((.......)))))))	chr16:730351-730640(+)$1	1	138	158	15.0399
((.(((.......)))))))	chr4:80994086-80994359(-)$1	1	17	37	15.5238
(.((((.......))))..)	chr20:43530070-43530299(+)$1	1	124	144	14.5794
((((.(.......).)))))	chr15:64752858-64753145(+)$1	1	79	99	14.7676
((((((.......)))))).	chr14:50360162-50360445(+)$1	1	199	219	14.5307
((((((.......))))))(	chr5:137688347-137688603(+)$1	1	62	82	14.2262
((((((.......)))))..	chr16:2301217-2301494(-)$1	1	207	227	14.1806
..((((.......)))).))	chr7:150779755-150780105(-)$1	1	321	341	14.5177
((((((.......)))))))	chr17:40761127-40761392(-)$1	1	17	37	14.7471
((((((.......))))).)	chr12:120907161-120907575(-)$1	1	69	89	13.9912
.((.((.......)).)).)	chr7:65338179-65338425(+)$1	1	56	76	12.8307
(((.((.......))..)))	chr15:66679268-66679550(+)$1	1	139	159	14.2666
(.((((.......)))).))	chr14:50359877-50360216(+)$1	1	226	246	14.0674
..((((.......))))..)	chrX:62570704-62570967(-)$1	1	7	27	14.5677
((((((.......))))).)	chr4:183836536-183836829(-)$1	1	119	139	13.9912
..((((.......))))..)	chr2:97535592-97535857(-)$1	1	186	206	14.5677
(((.((.......)).))))	chr10:98346473-98346743(-)$1	1	68	88	14.0975
((.(((.......)).).))	chr1:116926533-116926823(+)$1	1	103	123	14.5906
(..(((.......)))...)	chr17:46128066-46128360(+)$1	1	53	73	16.0311
((((((.......)))))))	chr19:50168666-50168911(-)$1	1	158	178	14.7471
(...((.......))...))	chr3:100428849-100429132(+)$1	1	50	70	14.0253
((((((.......)))))).	chr15:43477592-43477901(+)$1	1	180	200	14.5307
..((((.......)))).))	chr8:29931455-29931673(-)$1	1	181	201	14.5430
((.(((.......))).))(	chr8:145159357-145159696(+)$1	1	0	20	13.6442
((.(((.......)))..))	chrX:20284830-20285182(-)$1	1	208	228	15.5525
((.(.(.......).).)))	chr7:77166502-77166764(+)$1	1	93	113	14.5521
(.((((.......))))..)	chr15:79165199-79165501(+)$1	1	257	277	14.4860
((((((.......)))))))	chr11:118656974-118657322(-)$1	1	2	22	15.0399
((((((.......)))))))	chr2:20251173-20251423(-)$1	1	165	185	15.0399
((((((.......)).))))	chr10:129924405-129924702(-)$1	1	170	190	14.0031
.(((((.......)))))..	chr8:98788044-98788287(+)$1	1	189	209	14.0447
..((((.......))))..)	chr20:3740627-3740930(-)$1	1	196	216	14.4683
((((((.......)))))).	chr7:150028704-150029008(+)$1	1	40	60	13.8710
((((((.......)))))))	chr5:179132578-179132791(+)$1	1	90	110	14.2262
((.(((.......))).)))	chr19:36486052-36486353(+)$1	1	185	205	15.5300
((((((.......)))))))	chr2:242707710-242707991(+)$1	1	177	197	15.0399

#PSSM
f : 0.26	g : 0.17	e : 0.14	! : 0.07	d : 0.07	b : 0.06	c : 0.06	a : 0.04	[ : 0.04	i : 0.03	" : 0.01	
f : 0.23	e : 0.20	g : 0.15	! : 0.14	[ : 0.09	b : 0.04	c : 0.04	i : 0.03	" : 0.03	d : 0.01	
[ : 0.21	d : 0.20	f : 0.14	e : 0.14	g : 0.12	! : 0.07	b : 0.03	i : 0.03	c : 0.01	" : 0.01	
c : 0.28	d : 0.20	f : 0.12	e : 0.10	g : 0.10	[ : 0.09	i : 0.03	a : 0.03	" : 0.01	
c : 0.28	d : 0.20	b : 0.14	f : 0.12	e : 0.09	g : 0.09	[ : 0.03	i : 0.03	
c : 0.28	d : 0.20	b : 0.14	f : 0.12	e : 0.09	g : 0.09	a : 0.03	i : 0.03	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
c : 0.28	d : 0.20	b : 0.14	f : 0.12	e : 0.09	g : 0.09	a : 0.03	i : 0.03	
c : 0.28	d : 0.20	b : 0.14	f : 0.12	e : 0.09	g : 0.09	] : 0.03	i : 0.03	
c : 0.28	d : 0.20	f : 0.12	] : 0.10	g : 0.10	e : 0.09	i : 0.03	2 : 0.01	3 : 0.01	a : 0.01	
] : 0.20	d : 0.20	f : 0.15	e : 0.14	g : 0.10	2 : 0.07	i : 0.03	3 : 0.03	c : 0.01	b : 0.01	a : 0.01	
f : 0.20	e : 0.20	2 : 0.14	] : 0.14	g : 0.14	b : 0.06	c : 0.03	i : 0.03	3 : 0.03	d : 0.01	
f : 0.23	g : 0.15	e : 0.12	2 : 0.10	c : 0.07	b : 0.06	] : 0.06	d : 0.06	a : 0.04	i : 0.03	4 : 0.01	3 : 0.01	
g : 0.17	e : 0.14	f : 0.12	] : 0.10	d : 0.10	c : 0.09	b : 0.07	2 : 0.04	: : 0.03	i : 0.03	3 : 0.01	4 : 0.01	B : 0.01	7 : 0.01	

#score	937.8471484521737
#seq	64
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_CDS_m2_run2.txt

#BEAR
fffuuuuuuuuuuuuffff	chrM:7926-8134(+)$1	208	149	168	18.5008
^^^^^^^^^^^^^^^^ccc	chrM:10747-10956(+)$1	209	38	57	19.4073
fffuuuuuuuuuuuuffff	chrM:5335-5594(+)$1	259	228	247	18.5008
^^^^^^^^^^^^^^^^ccc	chrM:10756-10983(+)$1	227	29	48	19.4073
cxxxxxxxxxxxxxxxccc	chrM:6473-6699(+)$1	226	14	33	20.0569
hhhuuuuuuuuuuuuhhhh	chr11:639274-639550(+)$1	276	149	168	16.1325
dwwwwwwwwwwwwwwdddd	chr19:10407089-10407336(+)$1	247	181	200	19.9964
fwwwwwwwwwwwwwwffff	chrM:10172-10406(+)$1	234	148	167	20.7777
ewwwwwwwwwwwwwweeee	chrM:9490-9751(+)$1	261	35	54	20.7034
^^^^^^^^^^^^^^^eeee	chrM:8566-8794(+)$1	228	34	53	19.1768
^^^^^^^^^^^^^^^^ccc	chrM:10710-10947(+)$1	237	26	45	19.4073
fwwwwwwwwwwwwwwffff	chrM:10206-10416(+)$1	210	114	133	20.7777
^^^^^^^^^^^^^^^eeee	chrM:8450-8675(+)$1	225	150	169	19.1768
bvvvvvvvvvvvvvbb]ee	chrM:10126-10348(+)$1	222	56	75	18.4190
^^^^^^^^^^^^^^^eeee	chrM:8440-8650(+)$1	210	160	179	19.1768
bwwwwwwwwwwwwwwbb::	chrM:7777-7983(+)$1	206	38	57	18.3896
bxxxxxxxxxxxxxxxbb2	chr14:39649907-39650212(+)$1	305	120	139	19.1532
cxxxxxxxxxxxxxxxccc	chrM:9029-9279(+)$1	250	133	152	20.0569
yyyyyyyyyyyyyyyffff	chr11:65349570-65349830(+)$1	260	100	119	20.2454

#otherMatches

#Seq PSSM
GCUGUCCCCACAUUAGGCU	chrM:7926-8134(+)$1	208	149	168	18.5008
UUAUAUUACUACCACUGAC	chrM:10747-10956(+)$1	209	38	57	19.4073
GCAAUACUUAAUUUCUGCA	chrM:5335-5594(+)$1	259	228	247	18.5008
UUAUAUUACUACCACUGAC	chrM:10756-10983(+)$1	227	29	48	19.4073
UUCUCCUAUCUCUCCCAGU	chrM:6473-6699(+)$1	226	14	33	20.0569
GCCGCGCAGGUCCAGGGUG	chr11:639274-639550(+)$1	276	149	168	16.1325
CAUACAGCUGACAUCGGCG	chr19:10407089-10407336(+)$1	247	181	200	19.9964
GUUAUGUCAUCCCUCUUAU	chrM:10172-10406(+)$1	234	148	167	20.7777
GCCCCUACCCCCCAACUAG	chrM:9490-9751(+)$1	261	35	54	20.7034
UAUUUCCCCCUCUAUUGAU	chrM:8566-8794(+)$1	228	34	53	19.1768
CGUACAUAACCUAAACCUA	chrM:10710-10947(+)$1	237	26	45	19.4073
GUUAUGUCAUCCCUCUUAU	chrM:10206-10416(+)$1	210	114	133	20.7777
UAUUUCCCCCUCUAUUGAU	chrM:8450-8675(+)$1	225	150	169	19.1768
GACCCUAUAUCCCCCGCCC	chrM:10126-10348(+)$1	222	56	75	18.4190
UAUUUCCCCCUCUAUUGAU	chrM:8440-8650(+)$1	210	160	179	19.1768
CCCUCCCAUCCCUACGCAU	chrM:7777-7983(+)$1	206	38	57	18.3896
uaagggaaagugagaagca	chr14:39649907-39650212(+)$1	305	120	139	19.1532
CGUUUUCACACUUCUAGUA	chrM:9029-9279(+)$1	250	133	152	20.0569
GAAGUGAGGGGUGGAGCAC	chr11:65349570-65349830(+)$1	260	100	119	20.2454

#DB
(((............))))	chrM:7926-8134(+)$1	1	149	168	18.5008
................)))	chrM:10747-10956(+)$1	1	38	57	19.4073
(((............))))	chrM:5335-5594(+)$1	1	228	247	18.5008
................)))	chrM:10756-10983(+)$1	1	29	48	19.4073
(...............)))	chrM:6473-6699(+)$1	1	14	33	20.0569
(((............))))	chr11:639274-639550(+)$1	1	149	168	16.1325
(..............))))	chr19:10407089-10407336(+)$1	1	181	200	19.9964
(..............))))	chrM:10172-10406(+)$1	1	148	167	20.7777
(..............))))	chrM:9490-9751(+)$1	1	35	54	20.7034
...............))))	chrM:8566-8794(+)$1	1	34	53	19.1768
................)))	chrM:10710-10947(+)$1	1	26	45	19.4073
(..............))))	chrM:10206-10416(+)$1	1	114	133	20.7777
...............))))	chrM:8450-8675(+)$1	1	150	169	19.1768
(.............)).))	chrM:10126-10348(+)$1	1	56	75	18.4190
...............))))	chrM:8440-8650(+)$1	1	160	179	19.1768
(..............))..	chrM:7777-7983(+)$1	1	38	57	18.3896
(...............)).	chr14:39649907-39650212(+)$1	1	120	139	19.1532
(...............)))	chrM:9029-9279(+)$1	1	133	152	20.0569
...............))))	chr11:65349570-65349830(+)$1	1	100	119	20.2454

#PSSM
^ : 0.31	f : 0.21	b : 0.15	c : 0.10	h : 0.05	d : 0.05	e : 0.05	y : 0.05	
^ : 0.31	w : 0.26	x : 0.15	f : 0.10	h : 0.05	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	x : 0.15	f : 0.10	h : 0.05	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	u : 0.15	x : 0.15	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	u : 0.15	x : 0.15	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	u : 0.15	x : 0.15	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	u : 0.15	x : 0.15	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	u : 0.15	x : 0.15	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	u : 0.15	x : 0.15	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	u : 0.15	x : 0.15	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	u : 0.15	x : 0.15	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	u : 0.15	x : 0.15	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	u : 0.15	x : 0.15	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	u : 0.15	x : 0.15	v : 0.05	y : 0.05	
^ : 0.31	w : 0.26	u : 0.15	x : 0.15	b : 0.05	y : 0.05	
f : 0.26	e : 0.21	^ : 0.15	x : 0.15	b : 0.10	h : 0.05	d : 0.05	
f : 0.26	c : 0.26	e : 0.21	b : 0.10	h : 0.05	d : 0.05	] : 0.05	
f : 0.26	c : 0.26	e : 0.26	h : 0.05	d : 0.05	: : 0.05	b : 0.05	
f : 0.26	c : 0.26	e : 0.26	h : 0.05	d : 0.05	: : 0.05	2 : 0.05	

#score	367.46370986992645
#seq	19
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_CDS_m3_run2.txt

#BEAR
e[adddd!!ccclllccc22dddd444	chr5:150487941-150488185(-)$1	244	80	107	10.0841
ga!!dddd[cccmmmmcccdddd22a]	chr12:125397904-125398133(-)$1	229	72	99	11.9437
fffccc"""cccmmmmccc4444ccc]	chr19:59059090-59059353(+)$1	263	167	194	13.3102
===========oooooo==========	chr19:38866894-38867183(+)$1	289	41	68	10.3258
!eeeee!!ddddmmmmdddd22eeeee	chr22:30737744-30737975(-)$1	231	52	79	10.4330
ffffdddd[cccmmmmcccdddd>>>>	chr3:52265051-52265295(-)$1	244	113	140	10.8434
Hddddgggggggmmmmggggggg4444	chr11:62284822-62285085(-)$1	263	11	38	10.2453
=============lll===========	chr12:6978223-6978447(+)$1	224	148	175	11.1004
hhhhccc!!cccmmmmccc]ccc]hhh	chr10:120931795-120932063(-)$1	268	38	65	11.9193
[eeeee[a!!bbmmmmbb22a]eeeee	chr17:33328841-33329224(+)$1	383	195	222	11.9533
eeeee####cccmmmmccc666666ee	chr11:64535025-64535344(-)$1	319	261	288	10.8714
[eeeee"""cccmmmmccc333eeeee	chr1:160252645-160252948(-)$1	303	95	122	14.2636
eeee[ccc[cccmmmmccc]ccc]eee	chr4:122599496-122599746(-)$1	250	30	57	13.2937
eeeeeccc[cccmmmmcccccc]eeee	chr8:11679158-11679364(+)$1	206	93	120	12.6797
eeee"""eeeeemmmmeeeee333eee	chr19:39336449-39336712(-)$1	263	217	244	10.0641
da####bb[cccmmmmcccbb4444a]	chr8:61778310-61778581(+)$1	271	54	81	11.8514
eeeadddd[ccclllccc]dddd]a]e	chr12:58112057-58112303(+)$1	246	180	207	9.5117
ii"""ccc[cccmmmmccc]ccc>>>>	chr3:139081147-139081448(-)$1	301	106	133	12.5313
eeee[gggggggmmmmggggggg22ee	chr11:18424287-18424532(+)$1	245	128	155	11.0006
heeeee####bbmmmmbb4444eeeee	chr14:74533327-74533679(-)$1	352	111	138	12.1870
::==========mmmm==========:	chr2:102505157-102505457(+)$1	300	3	30	9.9703
eeeeee"""cccmmmmccc22eeeee:	chr3:49064293-49064567(-)$1	274	214	241	12.5830
ffffff"""cccmmmmccc]ffffff:	chr14:74187899-74188232(-)$1	333	301	328	11.1266
[ggggggg[cccmmmmccc]ggggggg	chr19:2433724-2434014(-)$1	290	74	101	13.2889
bbeeeee!!cccmmmmccceeeee444	chr1:45480333-45480607(+)$1	274	138	165	12.2846
!ggggggg[aooooooa]ggggggg]c	chr10:43882572-43882840(-)$1	268	183	210	8.8398
eeee[cccddddmmmmdddd22ccc22	chr17:7124792-7125036(+)$1	244	6	33	9.8331
iiii!!bb[cccmmmmccc]bb]iiii	chr17:7477477-7477718(+)$1	241	37	64	12.8731
bb!!eeeeecccmmmmccc333eeeee	chr6:7584316-7584576(+)$1	260	157	184	12.2757
C===========mmmm===========	chr10:75864863-75865134(+)$1	271	54	81	11.8962
dddddd[bbcccmmmmccc]bb]dddd	chr17:78263404-78263735(+)$1	331	41	68	10.5375
======####bbmmmmbb22=======	chr9:131371354-131371612(+)$1	258	203	230	13.1553
g"""ccc"""bbmmmmbb333ccc]gg	chr3:139091954-139092241(-)$1	287	21	48	12.4120
gggggg!!ddddmmmmdddd]gggggg	chr2:219130201-219130434(-)$1	233	25	52	10.5957
fff[dddd[cccmmmmccc]dddd333	chr12:113617639-113617906(-)$1	267	45	72	12.5616
c!!a"""eeeeemmmmeeeee333a22	chr3:47958388-47958694(-)$1	306	83	110	9.8607
ddd!!cccacccmmmmccc]a]ccc33	chr3:49714262-49714554(+)$1	292	67	94	12.6345
[a[eeeee[cccmmmmccc]eeeee]a	chrX:77380270-77380505(+)$1	235	168	195	12.8414
fggggggg!!bbmmmmbbggggggg]f	chrX:153582182-153582418(-)$1	236	58	85	11.5025
iiiiiii!!cccmmmmccciiiiiiii	chr3:41266359-41266609(+)$1	250	212	239	13.8038
[eeeee####bbmmmmbb4444eeeee	chr14:23495289-23495576(-)$1	287	139	166	12.4581
ee[dddd!!cccmmmmccc4444dddd	chr12:56504117-56504361(+)$1	244	92	119	12.9509
iiiiiiiii[bbmmmmbb22iiiiiii	chr3:49063658-49063929(-)$1	271	9	36	11.9184
cccbbddddcccmmmmccc22dddd]b	chr17:41348951-41349221(+)$1	270	145	172	10.7006
cccdddd"""bbmmmmbb333dddd]c	chr1:160261602-160261817(-)$1	215	180	207	11.7781
eeeiiiiiiiiimmmmiiiiiiiii55	chr2:84668269-84668594(-)$1	325	19	46	10.6452
:a[dddd!!cccmmmmccc22dddd]a	chr12:6879036-6879265(+)$1	229	160	187	11.9058
========[cccmmmmccc========	chr18:43669543-43669763(-)$1	220	156	183	14.4284
fffff[bb[cccmmmmccc]bb]ffff	chr9:140137521-140137770(+)$1	249	68	95	11.2164
====!!bb!!ccclllccc22bb]===	chr1:201824920-201825164(+)$1	244	35	62	10.5151
e!!a[bb!!cccmmmmcccbb]a22ee	chr11:62294688-62294945(-)$1	257	158	185	11.9875
=========[bbmmmmbb]========	chr10:103921221-103921469(+)$1	248	191	218	12.7415

#otherMatches

#Seq PSSM
AGGAGUUCAUCAAGAUGACCAACUAUG	chr5:150487941-150488185(-)$1	244	80	107	10.0841
GCAAGACCAUCACCCUUGAGGUCGAGC	chr12:125397904-125398133(-)$1	229	72	99	11.9437
GGUCAAUGAUGCCCAGGUAAGCCUUGU	chr19:59059090-59059353(+)$1	263	167	194	13.3102
GGUGGUUGGGGAAGAGACCUCAGUCAC	chr19:38866894-38867183(+)$1	289	41	68	10.3258
UAGGUGGGUCUUUGAUAAGGAAUACCU	chr22:30737744-30737975(-)$1	231	52	79	10.4330
CUCGGCUGAGAGAGAGCUCCAGCAGAU	chr3:52265051-52265295(-)$1	244	113	140	10.8434
UCUCAACUUGGACACAUCUAAGUUUGC	chr11:62284822-62285085(-)$1	263	11	38	10.2453
GGGAUGUCUUUUUCCAAGAAGGAUGUC	chr12:6978223-6978447(+)$1	224	148	175	11.1004
CUAACAGUCAUGUUUGCAUUUUGAUUA	chr10:120931795-120932063(-)$1	268	38	65	11.9193
CUGCUGUGUCCCGCAAGGCCCCCAGCA	chr17:33328841-33329224(+)$1	383	195	222	11.9533
GGGCCCCCACCCUCCUGGGCACCAUGG	chr11:64535025-64535344(-)$1	319	261	288	10.8714
ACAGUGAACUGGCUUCCCAAGCCACUG	chr1:160252645-160252948(-)$1	303	95	122	14.2636
UAAUGGGGCAAGAUUACUUUUCUAGUU	chr4:122599496-122599746(-)$1	250	30	57	13.2937
AUUUCAGAUCUCCCUUGAGUUUAGAAA	chr8:11679158-11679364(+)$1	206	93	120	12.6797
ACGGUACGUGCCAGCAGGCAUUUCUUG	chr19:39336449-39336712(-)$1	263	217	244	10.0641
GCGAUGCCGAGGAGAGCCUGGAUAAGA	chr8:61778310-61778581(+)$1	271	54	81	11.8514
GCCGCCUGGUCCCGUGGAGCAGGACAG	chr12:58112057-58112303(+)$1	246	180	207	9.5117
UCUUACAGUAUCCACAGAUCCUGAGCA	chr3:139081147-139081448(-)$1	301	106	133	12.5313
AUAAGUGGUUUUCCCAAAAACCGUGUU	chr11:18424287-18424532(+)$1	245	128	155	11.0006
UUGGCCCUCUGAUCACUCCCCAGGCCA	chr14:74533327-74533679(-)$1	352	111	138	12.1870
uuuagaaguauaaaaauauauuuuuau	chr2:102505157-102505457(+)$1	300	3	30	9.9703
UAGGGUCCUGAUUCAUGUCCUGCCCUG	chr3:49064293-49064567(-)$1	274	214	241	12.5830
GAGGGUAGAGCAGGACUGUGAUCCUCA	chr14:74187899-74188232(-)$1	333	301	328	11.1266
ACGGGUGGCAGCGGUGGCUUCCACCUG	chr19:2433724-2434014(-)$1	290	74	101	13.2889
UUGGGCUUGACUGGACAGUGGCCCCAA	chr1:45480333-45480607(+)$1	274	138	165	12.2846
GCAGGCCUGGAAAGGAUGAGGCCUGGU	chr10:43882572-43882840(-)$1	268	183	210	8.8398
GUUAAGGUCAGGUCCCCCUGCAGCCAG	chr17:7124792-7125036(+)$1	244	6	33	9.8331
GCUGUCAGGAUUUCUGAGUGCUUCGGU	chr17:7477477-7477718(+)$1	241	37	64	12.8731
GAGAAGCUCCUGUCUGCAGAACGAGCU	chr6:7584316-7584576(+)$1	260	157	184	12.2757
GAUGCUGGUUGCUGGGGCAACCAGUAU	chr10:75864863-75865134(+)$1	271	54	81	11.8962
UCCUUGUUCCAGGAAGCUGAGACCAAG	chr17:78263404-78263735(+)$1	331	41	68	10.5375
AUCCAGGUAAGCUGAAGUGACUGGGUG	chr9:131371354-131371612(+)$1	258	203	230	13.1553
CCAAUGGAAAGAUAAUUUGGGCCAAGC	chr3:139091954-139092241(-)$1	287	21	48	12.4120
UCAGGUGGUGGGUGUUUUUAGACCUGA	chr2:219130201-219130434(-)$1	233	25	52	10.5957
UGGUGCUGUGGGGACUCCCUCGGCCCC	chr12:113617639-113617906(-)$1	267	45	72	12.5616
GCACAAGCAUUGGAAAUAAUGAUGGGA	chr3:47958388-47958694(-)$1	306	83	110	9.8607
GCCCAGAGCUCCUCUCGGAUGACUCCC	chr3:49714262-49714554(+)$1	292	67	94	12.6345
GUGGAAUGGUCCUGUGGGGGUAUUUGA	chrX:77380270-77380505(+)$1	235	168	195	12.8414
CCUAUGGGCCUGGCCUCACCCAUGGAG	chrX:153582182-153582418(-)$1	236	58	85	11.5025
GCGUUUGGCUGAACCAUCACAGAUGCU	chr3:41266359-41266609(+)$1	250	212	239	13.8038
CCAUCUACCAAGCCACCUACAGAGAUG	chr14:23495289-23495576(-)$1	287	139	166	12.4581
GGUACAUGAAGUAUAUGCUGUGGAUGU	chr12:56504117-56504361(+)$1	244	92	119	12.9509
GGUGGGAGUGGGUAAGCUGGGCUCCCA	chr3:49063658-49063929(-)$1	271	9	36	11.9184
CUCCUUGCAGACAGAAGUCCUUGCAGA	chr17:41348951-41349221(+)$1	270	145	172	10.7006
CUCUAGAACAGCAGAAGCGCAUCUGUG	chr1:160261602-160261817(-)$1	215	180	207	11.7781
ACAGACAGGAGCAACGGCUUCUGUCAU	chr2:84668269-84668594(-)$1	325	19	46	10.6452
AAGUCUGGGCUCAAAGGAGAGCAGAGU	chr12:6879036-6879265(+)$1	229	160	187	11.9058
GCAUUAAGGCUGUGGAUAGCUUGGUGC	chr18:43669543-43669763(-)$1	220	156	183	14.4284
AUGGCCGCUACCUGACGGUUGCCGCCG	chr9:140137521-140137770(+)$1	249	68	95	11.2164
UUGUCCAUGCUCUACUAGAAAAUAGCA	chr1:201824920-201825164(+)$1	244	35	62	10.5151
AAGUGGAAAACUCCUAAGUUCAAGAUG	chr11:62294688-62294945(-)$1	257	158	185	11.9875
GAAGAAAGUAAGUUGUCUCACUUUCUU	chr10:103921221-103921469(+)$1	248	191	218	12.7415

#DB
(.(((((..(((...)))..))))...	chr5:150487941-150488185(-)$1	1	80	107	10.0841
((..((((.(((....)))))))..).	chr12:125397904-125398133(-)$1	1	72	99	11.9437
((((((...(((....)))....))).	chr19:59059090-59059353(+)$1	1	167	194	13.3102
(((((((((((......))))))))))	chr19:38866894-38867183(+)$1	1	41	68	10.3258
.(((((..((((....))))..)))))	chr22:30737744-30737975(-)$1	1	52	79	10.4330
((((((((.(((....)))))))....	chr3:52265051-52265295(-)$1	1	113	140	10.8434
((((((((((((....)))))))....	chr11:62284822-62285085(-)$1	1	11	38	10.2453
(((((((((((((...)))))))))))	chr12:6978223-6978447(+)$1	1	148	175	11.1004
(((((((..(((....))).))).)))	chr10:120931795-120932063(-)$1	1	38	65	11.9193
.(((((.(..((....))..).)))))	chr17:33328841-33329224(+)$1	1	195	222	11.9533
(((((....(((....)))......))	chr11:64535025-64535344(-)$1	1	261	288	10.8714
.(((((...(((....)))...)))))	chr1:160252645-160252948(-)$1	1	95	122	14.2636
((((.(((.(((....))).))).)))	chr4:122599496-122599746(-)$1	1	30	57	13.2937
((((((((.(((....)))))).))))	chr8:11679158-11679364(+)$1	1	93	120	12.6797
((((...(((((....)))))...)))	chr19:39336449-39336712(-)$1	1	217	244	10.0641
((....((.(((....)))))....).	chr8:61778310-61778581(+)$1	1	54	81	11.8514
((((((((.(((...))).)))).).)	chr12:58112057-58112303(+)$1	1	180	207	9.5117
((...(((.(((....))).)))....	chr3:139081147-139081448(-)$1	1	106	133	12.5313
((((.(((((((....)))))))..))	chr11:18424287-18424532(+)$1	1	128	155	11.0006
)(((((....((....))....)))))	chr14:74533327-74533679(-)$1	1	111	138	12.1870
..((((((((((....)))))))))).	chr2:102505157-102505457(+)$1	1	3	30	9.9703
)(((((...(((....)))..))))).	chr3:49064293-49064567(-)$1	1	214	241	12.5830
((((((...(((....))).)))))).	chr14:74187899-74188232(-)$1	1	301	328	11.1266
.(((((((.(((....))).)))))))	chr19:2433724-2434014(-)$1	1	74	101	13.2889
(((((((..(((....))))))))...	chr1:45480333-45480607(+)$1	1	138	165	12.2846
.(((((((.(......).))))))).)	chr10:43882572-43882840(-)$1	1	183	210	8.8398
((((.(((((((....))))..)))..	chr17:7124792-7125036(+)$1	1	6	33	9.8331
((((..((.(((....))).)).))))	chr17:7477477-7477718(+)$1	1	37	64	12.8731
((..((((((((....)))...)))))	chr6:7584316-7584576(+)$1	1	157	184	12.2757
((((((((((((....)))))))))))	chr10:75864863-75865134(+)$1	1	54	81	11.8962
((((((.(((((....))).)).))))	chr17:78263404-78263735(+)$1	1	41	68	10.5375
((((((....((....))..)))))))	chr9:131371354-131371612(+)$1	1	203	230	13.1553
(...(((...((....))...))).))	chr3:139091954-139092241(-)$1	1	21	48	12.4120
((((((..((((....)))).))))))	chr2:219130201-219130434(-)$1	1	25	52	10.5957
(((.((((.(((....))).))))...	chr12:113617639-113617906(-)$1	1	45	72	12.5616
(..(...(((((....)))))...)..	chr3:47958388-47958694(-)$1	1	83	110	9.8607
(((..(((((((....))).).)))..	chr3:49714262-49714554(+)$1	1	67	94	12.6345
.(.(((((.(((....))).))))).)	chrX:77380270-77380505(+)$1	1	168	195	12.8414
((((((((..((....))))))))).)	chrX:153582182-153582418(-)$1	1	58	85	11.5025
(((((((..(((....)))))))))))	chr3:41266359-41266609(+)$1	1	212	239	13.8038
.(((((....((....))....)))))	chr14:23495289-23495576(-)$1	1	139	166	12.4581
((.((((..(((....)))....))))	chr12:56504117-56504361(+)$1	1	92	119	12.9509
(((((((((.((....))..)))))))	chr3:49063658-49063929(-)$1	1	9	36	11.9184
((((((((((((....)))..)))).)	chr17:41348951-41349221(+)$1	1	145	172	10.7006
(((((((...((....))...)))).)	chr1:160261602-160261817(-)$1	1	180	207	11.7781
((((((((((((....)))))))))..	chr2:84668269-84668594(-)$1	1	19	46	10.6452
.(.((((..(((....)))..)))).)	chr12:6879036-6879265(+)$1	1	160	187	11.9058
((((((((.(((....)))))))))))	chr18:43669543-43669763(-)$1	1	156	183	14.4284
(((((.((.(((....))).)).))))	chr9:140137521-140137770(+)$1	1	68	95	11.2164
((((..((..(((...)))..)).)))	chr1:201824920-201825164(+)$1	1	35	62	10.5151
(..(.((..(((....))))).)..))	chr11:62294688-62294945(-)$1	1	158	185	11.9875
(((((((((.((....)).))))))))	chr10:103921221-103921469(+)$1	1	191	218	12.7415

#PSSM
e : 0.23	f : 0.11	= : 0.11	[ : 0.09	i : 0.07	g : 0.05	d : 0.05	c : 0.05	! : 0.03	h : 0.03	: : 0.03	b : 0.03	H : 0.01	C : 0.01	
e : 0.28	= : 0.13	f : 0.09	a : 0.07	i : 0.07	g : 0.07	d : 0.05	b : 0.03	! : 0.03	c : 0.03	[ : 0.01	h : 0.01	: : 0.01	" : 0.01	
e : 0.28	= : 0.15	f : 0.09	! : 0.07	g : 0.07	d : 0.05	i : 0.05	[ : 0.05	" : 0.03	c : 0.03	a : 0.01	h : 0.01	# : 0.01	
e : 0.26	= : 0.15	d : 0.11	g : 0.07	i : 0.07	! : 0.05	f : 0.05	a : 0.05	" : 0.03	c : 0.01	h : 0.01	# : 0.01	[ : 0.01	b : 0.01	
e : 0.21	d : 0.19	= : 0.13	[ : 0.07	g : 0.07	c : 0.05	" : 0.05	! : 0.05	i : 0.05	f : 0.03	# : 0.01	b : 0.01	
d : 0.19	e : 0.17	c : 0.15	= : 0.13	g : 0.11	i : 0.05	# : 0.03	" : 0.03	! : 0.03	f : 0.01	[ : 0.01	b : 0.01	
d : 0.17	c : 0.13	" : 0.11	= : 0.11	g : 0.09	b : 0.09	# : 0.07	e : 0.05	i : 0.05	! : 0.03	[ : 0.03	
! : 0.17	" : 0.11	= : 0.11	d : 0.09	g : 0.09	c : 0.09	b : 0.09	# : 0.07	e : 0.07	i : 0.03	a : 0.01	
[ : 0.26	! : 0.19	" : 0.11	= : 0.09	d : 0.07	# : 0.07	e : 0.05	g : 0.03	i : 0.03	b : 0.01	a : 0.01	
c : 0.55	= : 0.07	d : 0.05	! : 0.05	# : 0.05	g : 0.03	e : 0.03	" : 0.03	[ : 0.03	a : 0.01	i : 0.01	
c : 0.57	b : 0.17	= : 0.07	d : 0.05	g : 0.03	e : 0.03	o : 0.01	i : 0.01	
c : 0.57	b : 0.17	d : 0.05	= : 0.05	o : 0.03	g : 0.03	e : 0.03	i : 0.01	
m : 0.88	l : 0.03	o : 0.03	= : 0.01	c : 0.01	
m : 0.88	l : 0.07	o : 0.03	
m : 0.88	l : 0.07	o : 0.03	
m : 0.88	c : 0.03	o : 0.03	l : 0.03	
c : 0.57	b : 0.17	d : 0.05	= : 0.05	g : 0.03	e : 0.03	o : 0.01	a : 0.01	i : 0.01	
c : 0.57	b : 0.17	= : 0.07	d : 0.05	g : 0.03	e : 0.03	] : 0.01	i : 0.01	
c : 0.53	2 : 0.07	= : 0.07	g : 0.07	d : 0.05	e : 0.03	] : 0.03	4 : 0.03	3 : 0.03	i : 0.01	
] : 0.21	2 : 0.15	d : 0.11	= : 0.11	4 : 0.07	g : 0.07	3 : 0.07	e : 0.05	b : 0.03	i : 0.03	6 : 0.01	c : 0.01	
= : 0.13	2 : 0.11	d : 0.09	g : 0.09	b : 0.09	4 : 0.07	c : 0.07	3 : 0.07	e : 0.07	i : 0.05	a : 0.03	6 : 0.01	f : 0.01	] : 0.01	
d : 0.15	= : 0.13	g : 0.11	4 : 0.09	c : 0.09	3 : 0.07	b : 0.07	] : 0.05	e : 0.05	i : 0.05	2 : 0.03	6 : 0.01	f : 0.01	
e : 0.17	d : 0.15	= : 0.13	g : 0.11	c : 0.11	] : 0.07	4 : 0.05	i : 0.05	3 : 0.03	6 : 0.01	f : 0.01	b : 0.01	a : 0.01	
e : 0.19	d : 0.13	= : 0.13	c : 0.07	] : 0.07	g : 0.07	i : 0.07	2 : 0.05	> : 0.03	4 : 0.03	3 : 0.03	f : 0.03	6 : 0.01	
e : 0.21	= : 0.15	d : 0.09	4 : 0.07	g : 0.07	i : 0.07	2 : 0.05	c : 0.05	> : 0.03	a : 0.03	f : 0.03	h : 0.01	6 : 0.01	] : 0.01	3 : 0.01	
e : 0.24	= : 0.15	] : 0.13	4 : 0.05	g : 0.05	i : 0.05	a : 0.03	> : 0.03	f : 0.03	2 : 0.03	d : 0.03	3 : 0.03	c : 0.01	h : 0.01	5 : 0.01	
e : 0.24	= : 0.13	4 : 0.05	] : 0.05	: : 0.05	g : 0.05	i : 0.05	> : 0.03	c : 0.03	2 : 0.03	d : 0.03	3 : 0.03	a : 0.03	f : 0.03	h : 0.01	b : 0.01	5 : 0.01	

#score	608.537976766002
#seq	52
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF534ONM_EIF3G_UTR_m2_run2.txt

#BEAR
ccc!!gggggggpppppppggggggg22cc	chr17:56429328-56429653(-)$1	325	9	39	15.2954
:dddd[bb[cccpppppppccc]bb]dddd	chr4:39460409-39460618(-)$1	209	173	203	13.3780
[ffffff"""bbpppppppbbffffff]a]	chr12:6643913-6644128(+)$1	215	132	162	14.7830
eee[hhhhhhhhrrrrrrrrrhhhhhhhh]	chr19:39109733-39109997(+)$1	264	53	83	10.0771
bb[bb"""ddddpppppppdddd4444bb]	chr15:40331192-40331460(-)$1	268	31	61	14.0527
F:ffffff[cccpppppppccc]ffffffI	chr6:31704057-31704309(-)$1	252	6	36	13.2107
cc!!ffffffrrrrrrrrrffffff333cc	chr4:39699659-39699916(+)$1	257	185	215	12.7975
[bb"""aeeeeepppppppeeeee]a333b	chr7:54826750-54827018(-)$1	268	81	111	14.8912
[dddd####cccrrrrrrrrrccc4444dd	chr6:27860776-27861050(-)$1	274	76	106	12.7815
iiii[ffffffaqqqqqqqqa]ffffffii	chr15:44580970-44581218(+)$1	248	28	58	7.9599
!ccc[bbeeeeepppppppeeeee]bb]cc	chr20:2451244-2451532(-)$1	288	87	117	14.0971
[bb####eeeeepppppppeeeee333bbd	chr16:18801529-18801757(-)$1	228	134	164	14.3308
""hhhhhhhhrrrrrrrrrhhhhhhhh22=	chrX:77359649-77359902(+)$1	253	65	95	9.7993
ggggggg[ddddpppppppdddd]gggggg	chr6:27775856-27776113(+)$1	257	58	88	15.3905
hhhccc"""cccpppppppccc]ccc22hh	chr4:53117-53441(+)$1	324	218	248	14.8155
!ccca[ccc[bbpppppppbb]ccc]a]cc	chr22:24951875-24952129(+)$1	254	209	239	15.1169
:ffffff[ddddpppppppdddd]ffffff	chr11:17099065-17099318(-)$1	253	14	44	13.7611
FFggggggg[cccooooooccc]ggggggg	chr12:49663147-49663376(+)$1	229	95	125	7.6854
ffggggggg[bbpppppppbbggggggg::	chr3:23959240-23959465(+)$1	225	26	56	13.5997
:===========ppppppp===========	chr1:145438432-145438735(+)$1	303	231	261	15.3966
#ccc[eeeeerrrrrrrrreeeee22cccf	chr8:100905766-100906034(-)$1	268	84	114	12.0226
!!dddd[eeeeepppppppeeeee22dddd	chr4:39459913-39460161(-)$1	248	8	38	13.5785
eeeeeeee[cccpppppppccc]eeeee::	chr12:50135255-50135495(+)$1	240	125	155	13.5340
b[==========ppppppp==========2	chr15:64385842-64386171(-)$1	329	210	240	15.8442
!!eeeee!!cccpppppppccc]eeeee22	chr17:7215171-7215419(+)$1	248	146	176	15.3907
C::gggggggrrrrrrrrrgggggggeeee	chr12:111180494-111180746(-)$1	252	16	46	9.8660
eee[ccc"""bbpppppppbb22ccc]eee	chr19:18433730-18433995(-)$1	265	193	223	14.0955
ggg####cccrrrrrrrrrccc22gggggg	chr1:235291996-235292247(-)$1	251	192	222	13.0867
"bb[dddd[cccrrrrrrrrrcccddddbb	chr8:56986931-56987163(-)$1	232	53	83	11.7803
ddddbb"""cccpppppppccc4444bb]d	chr19:9938489-9938764(+)$1	275	184	214	14.4140
eeeeeee"""bbpppppppbb333eeeee:	chr19:50000350-50000565(+)$1	215	157	187	13.4035
bb[bb[ffffffpppppppffffff]bb]b	chr3:128902521-128902787(-)$1	266	169	199	13.8274
ffff"""bb[bbpppppppbbbb]ffffff	chr6:170862155-170862478(-)$1	323	249	279	13.5985
ggg!!ddddcccpppppppccc22dddd22	chr12:57039581-57039850(-)$1	269	91	121	14.2253
ccc[bb[ddddrrrrrrrrrdddd]bbccc	chr15:63449498-63449762(-)$1	264	209	239	11.7513
eeeeeeee[bbrrrrrrrrrbb]eeeee33	chr12:120933828-120934095(+)$1	267	71	101	11.9381
ff####ffffffpppppppffffff333ff	chr1:111991988-111992304(+)$1	316	180	210	14.7429
ffff[a[ccc[apppppppa]ccc]a22ff	chr6:31703977-31704257(-)$1	280	87	117	14.8370
dd[a[ffffffrrrrrrrrrffffff]add	chr22:24236485-24236756(+)$1	271	9	39	12.1376
::ffffffddddpppppppdddd]ffffff	chr17:73042918-73043161(-)$1	243	31	61	12.7913
dd[ffffff[bbpppppppbb]ffffff55	chr1:45987397-45987650(-)$1	253	183	213	12.6586
bb[dddd[ddddpppppppdddd]dddd]b	chr1:205719114-205719404(-)$1	290	199	229	13.7202
g[ffffff[cccpppppppcccffffffgg	chr10:75541713-75542002(+)$1	289	120	150	15.5042
bb[dddd[ddddpppppppdddd]dddd]b	chr1:205718997-205719220(-)$1	223	15	45	13.7202
!bb[ccc[ddddrrrrrrrrrdddd]ccc]	chr2:47403478-47403739(-)$1	261	30	60	12.5678
cc[bb"""ddddpppppppdddd]bbccc]	chr19:572492-572804(+)$1	312	267	297	14.2939
[ddddbb[acccrrrrrrrrrccc22a]bb	chr17:41150359-41150589(+)$1	230	51	81	12.0887
eeeee[bb[bbrrrrrrrrrbbbb]eeeee	chr16:18800334-18800541(-)$1	207	59	89	10.8622
[ggggggg[cccpppppppccc]ggggggg	chr11:75110463-75110722(+)$1	259	207	237	16.5657
eeee:gggggggrrrrrrrrrgggggggFF	chr6:144416512-144416800(-)$1	288	53	83	11.0619
fbb[gggggggapppppppa]ggggggg]b	chr1:8021672-8021944(+)$1	272	146	176	15.2820
!!ccc!!eeeeeqqqqqqqqeeeee]ccc2	chr7:10979563-10979855(-)$1	292	21	51	7.9600

#otherMatches

#Seq PSSM
GGUAGGGGCGGAGCUGGCGUCCGCCCACAC	chr17:56429328-56429653(-)$1	325	9	39	15.2954
CGGCGCGGCUCCCACUCUCGGAACCUUGUC	chr4:39460409-39460618(-)$1	209	173	203	13.3780
GGGGGGCCCUGGGCUGCGACCGCCCCCGAA	chr12:6643913-6644128(+)$1	215	132	162	14.7830
AGCUGGAGCGACAACAACGACGUCGUUUCC	chr19:39109733-39109997(+)$1	264	53	83	10.0771
UUGGUGGAAGACAAUGGAAGUCUAGUAGCG	chr15:40331192-40331460(-)$1	268	31	61	14.0527
GAUCCAGCCCGGGAGAGGACCGAGCUGGAG	chr6:31704057-31704309(-)$1	252	6	36	13.2107
CUGAAUCGCCGAGggaggaggcgguggagg	chr4:39699659-39699916(+)$1	257	185	215	12.7975
CAGAAACCCGGAUUCCGGUUCCGGUGGGCC	chr7:54826750-54827018(-)$1	268	81	111	14.8912
AGGUUCCUUUCACUCACUUUCUGACUUAGG	chr6:27860776-27861050(-)$1	274	76	106	12.7815
GGGUUCAAAGCCUCCGGAACGCGUUUUGGC	chr15:44580970-44581218(+)$1	248	28	58	7.9599
ACGUGGUGCUGCAUUUCCGGUAGCGGCGGC	chr20:2451244-2451532(-)$1	288	87	117	14.0971
CACUCUCUGAGAGCUCCAAUUUCAUCCGUC	chr16:18801529-18801757(-)$1	228	134	164	14.3308
UAGUGUGGGCCCUGUUCCUGCCCGCGCGGU	chrX:77359649-77359902(+)$1	253	65	95	9.7993
GAGGCUAUAAAAUGUACGUUUUUCUAGUUU	chr6:27775856-27776113(+)$1	257	58	88	15.3905
AUUGGACAAUUUGUAGCUAAGACUCCCGGA	chr4:53117-53441(+)$1	324	218	248	14.8155
GCCAGGGGCUGGAGAAAGACUUGCUGCAUG	chr22:24951875-24952129(+)$1	254	209	239	15.1169
GCUCCGCCUCCUGCGUGAGAGGAAGCGGGG	chr11:17099065-17099318(-)$1	253	14	44	13.7611
CACAGCGUGAGUGCAUCUCCAUCCACGUUG	chr12:49663147-49663376(+)$1	229	95	125	7.6854
ACUAAGAUGGACGGAUACAGUCGUCUUAUU	chr3:23959240-23959465(+)$1	225	26	56	13.5997
UUAUUUUUAAGCUCAAACUGCUUAAGAAUA	chr1:145438432-145438735(+)$1	303	231	261	15.3966
UCGCUGUGCACUCUUAUUCUGCGCCUGCGC	chr8:100905766-100906034(-)$1	268	84	114	12.0226
UGGCAGUCUCCAGUAGGAGUGGAGCUCUGU	chr4:39459913-39460161(-)$1	248	8	38	13.5785
GGCGGGUUAGGAAGGUACGUCUGAACCUAG	chr12:50135255-50135495(+)$1	240	125	155	13.5340
CGGGUGUCCGGGCUGCUCUCCUGGACGCUG	chr15:64385842-64386171(-)$1	329	210	240	15.8442
UUGGCCAGGAGCGAGCGAAGCUGUGGCCUU	chr17:7215171-7215419(+)$1	248	146	176	15.3907
CGAGGCUGUCUAAGGAGUCGGCGGCCAUUU	chr12:111180494-111180746(-)$1	252	16	46	9.8660
UCACCGGGAGGCGGGAACAGCAGUCGUUGG	chr19:18433730-18433995(-)$1	265	193	223	14.0955
GUCCACGCUCAGCGUUGUAGAGAAGAUGGU	chr1:235291996-235292247(-)$1	251	192	222	13.0867
GGAUGCAAGCGUGCUAUAUAAGCGUUGCUC	chr8:56986931-56987163(-)$1	232	53	83	11.7803
GCGGAGAGGCUCGGAGUCGGAGAAAGCUGU	chr19:9938489-9938764(+)$1	275	184	214	14.4140
CUGGGAGAAACUGGCAAGGAGAAGCUCCCG	chr19:50000350-50000565(+)$1	215	157	187	13.4035
GUGAGGGCUGGGGGAGGGGCCCGGCGCUGA	chr3:128902521-128902787(-)$1	266	169	199	13.8274
UUUCAACGGAGGGUAAAAACCCCAGAGAGC	chr6:170862155-170862478(-)$1	323	249	279	13.5985
CCGGACUACGCCAUGUUGGGGUUUGUGGGU	chr12:57039581-57039850(-)$1	269	91	121	14.2253
CCGAGAGUCAUAUGGGACGGAUGAGUCCGG	chr15:63449498-63449762(-)$1	264	209	239	11.7513
UGGCGUGGGGCUGCUUAGAUGCGCCACGGU	chr12:120933828-120934095(+)$1	267	71	101	11.9381
GUCCCGGGUGGUACUUUCCGCCGCCGCCAC	chr1:111991988-111992304(+)$1	316	180	210	14.7429
GGAGAGAGUCCCUGAGUGUGAGACCCGCCU	chr6:31703977-31704257(-)$1	280	87	117	14.8370
CCACUCGGGGCGGAGCCGCAGCCUCGCGGG	chr22:24236485-24236756(+)$1	271	9	39	12.1376
UGCGAAGCAAGGCCCACCCCCUUGGCUUUG	chr17:73042918-73043161(-)$1	243	31	61	12.7913
GGCGCGGCGCGCCCUUCUUGCCUGUUGCCU	chr1:45987397-45987650(-)$1	253	183	213	12.6586
CGGUCCCAUCGGCUGAAGUUCGGGGGGGGU	chr1:205719114-205719404(-)$1	290	199	229	13.7202
AUGGCGACACCCAGCCUGCGGGGUCGUCUG	chr10:75541713-75542002(+)$1	289	120	150	15.5042
CGGUCCCAUCGGCUGAAGUUCGGGGGGGGU	chr1:205718997-205719220(-)$1	223	15	45	13.7202
GCGGAGGGAUCUGGCGGAGGGAGGUGUUUA	chr2:47403478-47403739(-)$1	261	30	60	12.5678
GGUGCCGACCCGAAGCCGACGGGAGCCUGG	chr19:572492-572804(+)$1	312	267	297	14.2939
UCACUCCUCACCGGGGUGAAAGGUUAGCGG	chr17:41150359-41150589(+)$1	230	51	81	12.0887
GGCAAUGCCAGUAAAACCUCCUGUUUUGUC	chr16:18800334-18800541(-)$1	207	59	89	10.8622
AGGGCUUCUCGGGGUGCCACCGCGAGGCCU	chr11:75110463-75110722(+)$1	259	207	237	16.5657
CGACGGCGCGGACCUGGAGCUUCCGCGCGG	chr6:144416512-144416800(-)$1	288	53	83	11.0619
GGCGCCGCGUCCGCAGGAAGAGGCGCGGGG	chr1:8021672-8021944(+)$1	272	146	176	15.2820
GCAAGCUGCCCUCCCAGCCAAGGGUCCUUC	chr7:10979563-10979855(-)$1	292	21	51	7.9600

#DB
(((..(((((((.......)))))))..))	chr17:56429328-56429653(-)$1	1	9	39	15.2954
.((((.((.(((.......))).)).))))	chr4:39460409-39460618(-)$1	1	173	203	13.3780
.((((((...((.......)))))))).).	chr12:6643913-6644128(+)$1	1	132	162	14.7830
(((.((((((((.........)))))))).	chr19:39109733-39109997(+)$1	1	53	83	10.0771
((.((...((((.......))))....)).	chr15:40331192-40331460(-)$1	1	31	61	14.0527
(.((((((.(((.......))).))))))(	chr6:31704057-31704309(-)$1	1	6	36	13.2107
((..((((((.........))))))...))	chr4:39699659-39699916(+)$1	1	185	215	12.7975
.((...((((((.......))))).)...)	chr7:54826750-54827018(-)$1	1	81	111	14.8912
.((((....(((.........)))....))	chr6:27860776-27861050(-)$1	1	76	106	12.7815
((((.(((((((........).))))))))	chr15:44580970-44581218(+)$1	1	28	58	7.9599
.(((.(((((((.......))))).)).))	chr20:2451244-2451532(-)$1	1	87	117	14.0971
.((....(((((.......)))))...)))	chr16:18801529-18801757(-)$1	1	134	164	14.3308
..((((((((.........))))))))..)	chrX:77359649-77359902(+)$1	1	65	95	9.7993
(((((((.((((.......)))).))))))	chr6:27775856-27776113(+)$1	1	58	88	15.3905
((((((...(((.......))).)))..))	chr4:53117-53441(+)$1	1	218	248	14.8155
.((((.(((.((.......)).))).).))	chr22:24951875-24952129(+)$1	1	209	239	15.1169
.((((((.((((.......)))).))))))	chr11:17099065-17099318(-)$1	1	14	44	13.7611
(((((((((.(((......))).)))))))	chr12:49663147-49663376(+)$1	1	95	125	7.6854
))(((((((.((.......)))))))))..	chr3:23959240-23959465(+)$1	1	26	56	13.5997
.(((((((((((.......)))))))))))	chr1:145438432-145438735(+)$1	1	231	261	15.3966
.(((.(((((.........)))))..))))	chr8:100905766-100906034(-)$1	1	84	114	12.0226
..((((.(((((.......)))))..))))	chr4:39459913-39460161(-)$1	1	8	38	13.5785
)))(((((.(((.......))).)))))..	chr12:50135255-50135495(+)$1	1	125	155	13.5340
(.((((((((((.......)))))))))).	chr15:64385842-64386171(-)$1	1	210	240	15.8442
..(((((..(((.......))).)))))..	chr17:7215171-7215419(+)$1	1	146	176	15.3907
(..(((((((.........)))))))((((	chr12:111180494-111180746(-)$1	1	16	46	9.8660
(((.(((...((.......))..))).)))	chr19:18433730-18433995(-)$1	1	193	223	14.0955
(((....(((.........)))..))))))	chr1:235291996-235292247(-)$1	1	192	222	13.0867
.((.((((.(((.........)))))))))	chr8:56986931-56987163(-)$1	1	53	83	11.7803
((((((...(((.......)))....)).)	chr19:9938489-9938764(+)$1	1	184	214	14.4140
))(((((...((.......))...))))).	chr19:50000350-50000565(+)$1	1	157	187	13.4035
((.((.((((((.......)))))).)).)	chr3:128902521-128902787(-)$1	1	169	199	13.8274
((((...((.((.......)))).))))))	chr6:170862155-170862478(-)$1	1	249	279	13.5985
(((..(((((((.......)))..))))..	chr12:57039581-57039850(-)$1	1	91	121	14.2253
(((.((.((((.........)))).)))))	chr15:63449498-63449762(-)$1	1	209	239	11.7513
((((((((.((.........)).)))))..	chr12:120933828-120934095(+)$1	1	71	101	11.9381
((....((((((.......))))))...))	chr1:111991988-111992304(+)$1	1	180	210	14.7429
((((.(.(((.(.......).))).)..))	chr6:31703977-31704257(-)$1	1	87	117	14.8370
((.(.((((((.........)))))).)))	chr22:24236485-24236756(+)$1	1	9	39	12.1376
..((((((((((.......)))).))))))	chr17:73042918-73043161(-)$1	1	31	61	12.7913
((.((((((.((.......)).))))))..	chr1:45987397-45987650(-)$1	1	183	213	12.6586
((.((((.((((.......)))).)))).)	chr1:205719114-205719404(-)$1	1	199	229	13.7202
(.((((((.(((.......)))))))))))	chr10:75541713-75542002(+)$1	1	120	150	15.5042
((.((((.((((.......)))).)))).)	chr1:205718997-205719220(-)$1	1	15	45	13.7202
.((.(((.((((.........)))).))).	chr2:47403478-47403739(-)$1	1	30	60	12.5678
((.((...((((.......)))).))))).	chr19:572492-572804(+)$1	1	267	297	14.2939
.((((((.((((.........)))..).))	chr17:41150359-41150589(+)$1	1	51	81	12.0887
(((((.((.((.........)))).)))))	chr16:18800334-18800541(-)$1	1	59	89	10.8622
.(((((((.(((.......))).)))))))	chr11:75110463-75110722(+)$1	1	207	237	16.5657
)))).(((((((.........)))))))))	chr6:144416512-144416800(-)$1	1	53	83	11.0619
)((.((((((((.......).))))))).)	chr1:8021672-8021944(+)$1	1	146	176	15.2820
..(((..(((((........))))).))).	chr7:10979563-10979855(-)$1	1	21	51	7.9600

#PSSM
e : 0.13	[ : 0.11	! : 0.11	b : 0.09	f : 0.09	c : 0.07	: : 0.07	g : 0.07	d : 0.05	F : 0.03	" : 0.03	i : 0.01	h : 0.01	# : 0.01	C : 0.01	
b : 0.17	c : 0.13	e : 0.13	d : 0.11	f : 0.11	g : 0.07	: : 0.05	! : 0.05	[ : 0.03	i : 0.01	" : 0.01	h : 0.01	F : 0.01	= : 0.01	
e : 0.15	f : 0.13	[ : 0.13	c : 0.11	g : 0.11	d : 0.09	b : 0.09	h : 0.03	= : 0.03	! : 0.01	i : 0.01	: : 0.01	# : 0.01	
f : 0.15	d : 0.13	[ : 0.11	e : 0.11	c : 0.09	g : 0.09	! : 0.05	b : 0.05	# : 0.05	= : 0.03	" : 0.01	i : 0.01	h : 0.01	a : 0.01	
d : 0.13	f : 0.13	g : 0.11	b : 0.09	[ : 0.09	e : 0.09	c : 0.07	# : 0.05	! : 0.03	h : 0.03	" : 0.03	= : 0.03	a : 0.01	: : 0.01	
f : 0.17	g : 0.15	e : 0.09	d : 0.09	[ : 0.07	" : 0.07	# : 0.07	b : 0.07	c : 0.05	h : 0.03	= : 0.03	a : 0.01	! : 0.01	
f : 0.21	g : 0.15	" : 0.09	e : 0.09	b : 0.07	d : 0.07	# : 0.05	c : 0.05	[ : 0.05	h : 0.03	= : 0.03	a : 0.01	! : 0.01	
f : 0.17	e : 0.15	g : 0.13	" : 0.13	[ : 0.11	b : 0.05	c : 0.05	d : 0.05	h : 0.03	= : 0.03	# : 0.01	! : 0.01	
d : 0.19	[ : 0.15	g : 0.11	f : 0.11	e : 0.11	" : 0.09	c : 0.05	h : 0.03	= : 0.03	# : 0.01	! : 0.01	b : 0.01	a : 0.01	
c : 0.26	d : 0.17	e : 0.11	f : 0.09	[ : 0.09	g : 0.07	" : 0.05	h : 0.03	= : 0.03	b : 0.03	
c : 0.24	b : 0.17	d : 0.17	r : 0.09	e : 0.09	f : 0.07	g : 0.05	= : 0.03	h : 0.01	[ : 0.01	
c : 0.24	r : 0.17	d : 0.15	b : 0.13	e : 0.09	a : 0.05	g : 0.03	= : 0.03	f : 0.03	h : 0.01	
p : 0.65	r : 0.28	q : 0.03	c : 0.01	
p : 0.65	r : 0.28	q : 0.03	o : 0.01	
p : 0.65	r : 0.28	q : 0.03	o : 0.01	
p : 0.65	r : 0.28	q : 0.03	o : 0.01	
p : 0.65	r : 0.28	q : 0.03	o : 0.01	
p : 0.65	r : 0.28	q : 0.03	o : 0.01	
p : 0.65	r : 0.28	q : 0.03	o : 0.01	
c : 0.21	r : 0.19	b : 0.13	d : 0.13	e : 0.09	f : 0.05	g : 0.03	q : 0.03	= : 0.03	a : 0.03	h : 0.01	
c : 0.21	b : 0.17	d : 0.15	r : 0.11	e : 0.11	f : 0.07	g : 0.03	= : 0.03	] : 0.03	a : 0.01	h : 0.01	
c : 0.28	d : 0.17	e : 0.11	g : 0.09	f : 0.09	] : 0.05	b : 0.05	h : 0.03	= : 0.03	2 : 0.01	3 : 0.01	
d : 0.17	] : 0.15	f : 0.15	e : 0.11	g : 0.09	c : 0.09	2 : 0.05	h : 0.03	= : 0.03	b : 0.03	4 : 0.01	3 : 0.01	
f : 0.17	e : 0.17	g : 0.13	c : 0.13	] : 0.13	b : 0.03	h : 0.03	4 : 0.03	= : 0.03	2 : 0.03	d : 0.03	3 : 0.01	
f : 0.23	g : 0.17	] : 0.09	e : 0.09	d : 0.09	4 : 0.05	c : 0.05	2 : 0.05	b : 0.03	h : 0.03	= : 0.03	3 : 0.01	
g : 0.17	f : 0.17	] : 0.09	e : 0.09	d : 0.07	4 : 0.05	3 : 0.05	b : 0.05	2 : 0.05	h : 0.03	a : 0.03	c : 0.03	= : 0.03	
f : 0.15	g : 0.13	d : 0.11	e : 0.11	3 : 0.07	b : 0.07	c : 0.07	2 : 0.05	h : 0.03	4 : 0.03	a : 0.03	= : 0.03	] : 0.03	
f : 0.13	g : 0.13	e : 0.13	d : 0.11	c : 0.09	2 : 0.07	] : 0.07	b : 0.07	3 : 0.05	= : 0.03	h : 0.01	4 : 0.01	a : 0.01	
c : 0.17	f : 0.11	g : 0.09	] : 0.09	d : 0.07	b : 0.07	e : 0.07	2 : 0.05	h : 0.03	3 : 0.03	: : 0.03	= : 0.03	a : 0.01	i : 0.01	5 : 0.01	F : 0.01	
b : 0.13	d : 0.11	f : 0.11	c : 0.09	] : 0.09	g : 0.09	2 : 0.07	: : 0.05	e : 0.05	= : 0.03	I : 0.01	i : 0.01	h : 0.01	3 : 0.01	5 : 0.01	F : 0.01	

#score	686.3738358799252
#seq	52
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_UTR_m3_run1.txt

#BEAR
eeeeqqqqqqqqeeee	chr4:39905590-39905867(-)$1	277	232	248	14.2214
ggggqqqqqqqqgggg	chr3:42687280-42687570(+)$1	290	67	83	13.1309
!cccqqqqqqqqccc2	chr3:14199602-14199891(-)$1	289	36	52	13.7503
ggggqqqqqqqqgggg	chr21:45550552-45550852(+)$1	300	55	71	13.1309
!cccqqqqqqqqccc2	chr6:31727767-31727997(+)$1	230	27	43	13.7503
:cccqqqqqqqqcccd	chr19:34949646-34949902(+)$1	256	197	213	13.0796
ddddqqqqqqqqdddd	chr20:43514374-43514639(+)$1	265	185	201	14.5049
ddddqqqqqqqqdddd	chr11:16760198-16760420(+)$1	222	15	31	14.5049
ddddqqqqqqqqdddd	chr20:34302004-34302232(-)$1	228	203	219	14.5049
:cccqqqqqqqqcccf	chr19:8531051-8531290(+)$1	239	163	179	12.7955
ccccqqqqqqqqccc]	chr17:27001454-27001656(+)$1	202	2	18	13.8395
eeeeqqqqqqqqeeee	chr10:70545803-70546029(+)$1	226	13	29	14.2214
eeeeqqqqqqqqeeee	chr5:140032514-140032758(+)$1	244	179	195	14.2214
:cccqqqqqqqqccce	chr16:75668039-75668291(-)$1	252	158	174	13.0952
ddddqqqqqqqqdddd	chr1:150198839-150199116(-)$1	277	160	176	14.5049
ddddqqqqqqqqdddd	chrX:154020322-154020535(-)$1	213	160	176	14.5049
:cccqqqqqqqqccce	chr4:17806090-17806397(-)$1	307	47	63	13.0952
Ccccqqqqqqqqccce	chr3:10157273-10157604(+)$1	331	117	133	13.0914
eeeeqqqqqqqqeeee	chr12:133254124-133254406(-)$1	282	196	212	14.2214
!cccqqqqqqqqccc]	chr7:156526769-156527051(-)$1	282	113	129	13.9153
eeeeqqqqqqqqeeee	chr2:153512715-153513011(-)$1	296	244	260	14.2214
ddddqqqqqqqqdddd	chr7:35943763-35943998(+)$1	235	37	53	14.5049
ecccqqqqqqqqccc2	chr14:102547948-102548166(-)$1	218	128	144	13.8307
[cccqqqqqqqqccc3	chr17:7480272-7480506(+)$1	234	36	52	13.8774
ddddqqqqqqqqdddd	chr1:53504485-53504716(+)$1	231	210	226	14.5049
dd[aqqqqqqqqaddd	chr21:38456475-38456745(+)$1	270	31	47	14.0286
eeeeqqqqqqqqeeee	chr15:64428954-64429295(+)$1	341	247	263	14.2214
eeeeqqqqqqqqeeee	chr7:158448811-158449074(-)$1	263	27	43	14.2214
eeeeqqqqqqqqeeee	chr12:76442885-76443102(-)$1	217	147	163	14.2214
ddddqqqqqqqqdddd	chr15:89790785-89791019(+)$1	234	73	89	14.5049
eeeeqqqqqqqqeeee	chr6:28119938-28120225(+)$1	287	216	232	14.2214
ddddqqqqqqqqdddd	chr14:90871012-90871233(+)$1	221	111	127	14.5049
[cccqqqqqqqqcccc	chr6:26123908-26124234(-)$1	326	55	71	13.8333
ddddqqqqqqqqdddd	chrX:151130795-151131018(-)$1	223	112	128	14.5049
[cccqqqqqqqqcccc	chr12:118693167-118693514(-)$1	347	143	159	13.8333
ddddqqqqqqqqdddd	chr15:59185067-59185290(-)$1	223	187	203	14.5049
ddddqqqqqqqqdddd	chr10:98346595-98346877(-)$1	282	52	68	14.5049
[cccqqqqqqqqccca	chr19:5609986-5610199(-)$1	213	137	153	13.7887
cc[aqqqqqqqqa]cc	chr12:76442115-76442324(-)$1	209	126	142	13.2644
ddddqqqqqqqqdddd	chr15:93541627-93541881(+)$1	254	45	61	14.5049
eeeeqqqqqqqqeeee	chr12:76442879-76443081(-)$1	202	126	142	14.2214
[cccqqqqqqqqccc3	chr1:156303246-156303466(-)$1	220	65	81	13.8774
ggggqqqqqqqqgggg	chr1:51171360-51171646(-)$1	286	39	55	13.1309
ddddqqqqqqqqdddd	chr12:76449793-76449998(-)$1	205	152	168	14.5049
dcccqqqqqqqqccc]	chr17:27001351-27001560(+)$1	209	105	121	14.0197
ee[aqqqqqqqqa]ee	chr12:131360542-131360811(+)$1	269	45	61	13.6486
dd[aqqqqqqqqa]dd	chr12:131357332-131357557(+)$1	225	133	149	13.7661
ddddqqqqqqqqdddd	chr15:74918041-74918371(+)$1	330	191	207	14.5049
eeeeqqqqqqqqeeee	chr1:85117486-85117744(-)$1	258	146	162	14.2214
cc[aqqqqqqqqaccc	chr18:13015226-13015521(+)$1	295	248	264	13.4645
ddddqqqqqqqqdddd	chr11:62650279-62650537(+)$1	258	179	195	14.5049
[cccqqqqqqqqccc2	chrX:151127458-151127720(-)$1	262	241	257	13.7200
eeeeqqqqqqqqeeee	chr11:3047818-3048118(-)$1	300	227	243	14.2214
fcccqqqqqqqqccc]	chr2:242206112-242206414(-)$1	302	37	53	13.6948
eeeeqqqqqqqqeeee	chr8:128752539-128752797(+)$1	258	36	52	14.2214
eeeeqqqqqqqqeeee	chr6:163876226-163876533(+)$1	307	96	112	14.2214
eeeeqqqqqqqqeeee	chr5:140032463-140032714(+)$1	251	230	246	14.2214
ddddqqqqqqqqdddd	chr17:62498464-62498668(-)$1	204	9	25	14.5049
ddddqqqqqqqqdddd	chr3:184044954-184045246(+)$1	292	115	131	14.5049
eeeeqqqqqqqqeeee	chr12:56563458-56563677(-)$1	219	127	143	14.2214
ddddqqqqqqqqdddd	chr4:17585005-17585366(+)$1	361	251	267	14.5049
ddddqqqqqqqqdddd	chr9:127998769-127999036(-)$1	267	45	61	14.5049
ggggqqqqqqqqgggg	chr3:101292938-101293195(+)$1	257	93	109	13.1309
eeeeqqqqqqqqeeee	chr9:123201819-123202056(-)$1	237	84	100	14.2214
ddddqqqqqqqqdddd	chrX:102933324-102933572(-)$1	248	30	46	14.5049
ddddqqqqqqqqdddd	chr17:56066367-56066679(-)$1	312	184	200	14.5049
eeeeqqqqqqqqeeee	chr5:33461161-33461391(+)$1	230	139	155	14.2214
eeeeqqqqqqqqeeee	chr1:43132919-43133193(+)$1	274	169	185	14.2214
eeeeqqqqqqqqeeee	chr6:160199964-160200251(-)$1	287	51	67	14.2214
"cccqqqqqqqqccc3	chr17:40133849-40134127(-)$1	278	225	241	13.7679
dcccqqqqqqqqccc]	chr17:27001264-27001518(+)$1	254	192	208	14.0197

#otherMatches

#Seq PSSM
GGUUGAGUGUAAAACU	chr4:39905590-39905867(-)$1	277	232	248	14.2214
AGAUUUUUAUAUAUUU	chr3:42687280-42687570(+)$1	290	67	83	13.1309
GGCAAGAAAAUGUGCA	chr3:14199602-14199891(-)$1	289	36	52	13.7503
GCUUGGAGGAGGAGGC	chr21:45550552-45550852(+)$1	300	55	71	13.1309
AAGGCUACAUCUUCUG	chr6:31727767-31727997(+)$1	230	27	43	13.7503
UGGGUCUCUUUUCCUU	chr19:34949646-34949902(+)$1	256	197	213	13.0796
cgggggcccAAACUCG	chr20:43514374-43514639(+)$1	265	185	201	14.5049
CUGCGUUCUGUAGUGG	chr11:16760198-16760420(+)$1	222	15	31	14.5049
AAGGGAAAAAGAUUUU	chr20:34302004-34302232(-)$1	228	203	219	14.5049
AGUCGUGGAAUAGGCA	chr19:8531051-8531290(+)$1	239	163	179	12.7955
GCAGUGAGUAGUCUGU	chr17:27001454-27001656(+)$1	202	2	18	13.8395
cagucaugugccacug	chr10:70545803-70546029(+)$1	226	13	29	14.2214
AGCUAACUAUAGGGCU	chr5:140032514-140032758(+)$1	244	179	195	14.2214
ACUUAUCACAACGAGC	chr16:75668039-75668291(-)$1	252	158	174	13.0952
UGAAAGAAGAAAUUCA	chr1:150198839-150199116(-)$1	277	160	176	14.5049
CCCAUGAGUCACUGGG	chrX:154020322-154020535(-)$1	213	160	176	14.5049
AGCUAAAUCACCAGUU	chr4:17806090-17806397(-)$1	307	47	63	13.0952
GGGACAGGAGGAUCCG	chr3:10157273-10157604(+)$1	331	117	133	13.0914
AUGUUCCCUACCACAU	chr12:133254124-133254406(-)$1	282	196	212	14.2214
GGUGGAAUACAACAUA	chr7:156526769-156527051(-)$1	282	113	129	13.9153
GACUCUAUUUUAAGUU	chr2:153512715-153513011(-)$1	296	244	260	14.2214
CAUGUUGUCUAUCAUG	chr7:35943763-35943998(+)$1	235	37	53	14.5049
AGGGAUGACUUACCUG	chr14:102547948-102548166(-)$1	218	128	144	13.8307
UGGAUAUAUCUCUCCC	chr17:7480272-7480506(+)$1	234	36	52	13.8774
AGGAUCAGUGCUUCCU	chr1:53504485-53504716(+)$1	231	210	226	14.5049
ggagaagaagaaccca	chr21:38456475-38456745(+)$1	270	31	47	14.0286
UGCAACAAGAUGUGCA	chr15:64428954-64429295(+)$1	341	247	263	14.2214
GAGUAUCUGCUGACUC	chr7:158448811-158449074(-)$1	263	27	43	14.2214
UAUUAAAUUUAAGAUA	chr12:76442885-76443102(-)$1	217	147	163	14.2214
GUUCUGUGAUAUGAGC	chr15:89790785-89791019(+)$1	234	73	89	14.5049
CUCCCUGGGUAAGGAG	chr6:28119938-28120225(+)$1	287	216	232	14.2214
UCUUGCAAAAAAAAGA	chr14:90871012-90871233(+)$1	221	111	127	14.5049
UAGCAGAAAUCCGCUC	chr6:26123908-26124234(-)$1	326	55	71	13.8333
GUACACAAUUAGGUAU	chrX:151130795-151131018(-)$1	223	112	128	14.5049
UGCGUAAAGGGGUGCU	chr12:118693167-118693514(-)$1	347	143	159	13.8333
CUUCGAAGGUAGGAAG	chr15:59185067-59185290(-)$1	223	187	203	14.5049
UGACGUGGCUGAGUCA	chr10:98346595-98346877(-)$1	282	52	68	14.5049
CUGUCCUCCACAACAC	chr19:5609986-5610199(-)$1	213	137	153	13.7887
AUGUGGCCUUGAGGAU	chr12:76442115-76442324(-)$1	209	126	142	13.2644
AUCCACUAACCAGGAU	chr15:93541627-93541881(+)$1	254	45	61	14.5049
UAUUAAAUUUAAGAUA	chr12:76442879-76443081(-)$1	202	126	142	14.2214
AUCGAAAUUAGCCGGA	chr1:156303246-156303466(-)$1	220	65	81	13.8774
CUUGUUCAUCUCUGAG	chr1:51171360-51171646(-)$1	286	39	55	13.1309
UAAGAAUGUUGACUUG	chr12:76449793-76449998(-)$1	205	152	168	14.5049
GCAGUGAGUAGUCUGU	chr17:27001351-27001560(+)$1	209	105	121	14.0197
CAUCUGUGGGAUGCUG	chr12:131360542-131360811(+)$1	269	45	61	13.6486
GUAUGUGCUGGAAAAC	chr12:131357332-131357557(+)$1	225	133	149	13.7661
GAAGGAGAAUAACUUC	chr15:74918041-74918371(+)$1	330	191	207	14.5049
AAAAUGUGAAACUUUU	chr1:85117486-85117744(-)$1	258	146	162	14.2214
GGUCUUCACCUUGCCA	chr18:13015226-13015521(+)$1	295	248	264	13.4645
CACCAAGGUGAAGGUG	chr11:62650279-62650537(+)$1	258	179	195	14.5049
CCAACCAGCCAUUUGU	chrX:151127458-151127720(-)$1	262	241	257	13.7200
CCUGAGAGCAUGUGGG	chr11:3047818-3048118(-)$1	300	227	243	14.2214
CUCAUAGAUAAUUGAG	chr2:242206112-242206414(-)$1	302	37	53	13.6948
AAUCUGGUAAUUGAUU	chr8:128752539-128752797(+)$1	258	36	52	14.2214
UACGGAAAGACAUGUA	chr6:163876226-163876533(+)$1	307	96	112	14.2214
AGCUAACUAUAGGGCU	chr5:140032463-140032714(+)$1	251	230	246	14.2214
GUCUAAUGGAAGAGAU	chr17:62498464-62498668(-)$1	204	9	25	14.5049
ACGGGGAGGGGACCGU	chr3:184044954-184045246(+)$1	292	115	131	14.5049
CCACAAGGGUAGGUGG	chr12:56563458-56563677(-)$1	219	127	143	14.2214
CUAUGGAAGGUGAUGG	chr4:17585005-17585366(+)$1	361	251	267	14.5049
CUUCAAAGCUAAGAAG	chr9:127998769-127999036(-)$1	267	45	61	14.5049
GGCUGCAGGGGAGGCC	chr3:101292938-101293195(+)$1	257	93	109	13.1309
AUAAUUACAGUUUUGU	chr9:123201819-123202056(-)$1	237	84	100	14.2214
GCCUUUCUUUCUAGGU	chrX:102933324-102933572(-)$1	248	30	46	14.5049
GACAUCUGACGCUGUC	chr17:56066367-56066679(-)$1	312	184	200	14.5049
UACGGUAUAUAGCGUA	chr5:33461161-33461391(+)$1	230	139	155	14.2214
AGUCCAGACAAAGACU	chr1:43132919-43133193(+)$1	274	169	185	14.2214
UGCAACAGAAGCUGCA	chr6:160199964-160200251(-)$1	287	51	67	14.2214
ACCUAGAUGAGGAGGG	chr17:40133849-40134127(-)$1	278	225	241	13.7679
GCAGUGAGUAGUCUGU	chr17:27001264-27001518(+)$1	254	192	208	14.0197

#DB
((((........))))	chr4:39905590-39905867(-)$1	1	232	248	14.2214
((((........))))	chr3:42687280-42687570(+)$1	1	67	83	13.1309
.(((........))).	chr3:14199602-14199891(-)$1	1	36	52	13.7503
((((........))))	chr21:45550552-45550852(+)$1	1	55	71	13.1309
.(((........))).	chr6:31727767-31727997(+)$1	1	27	43	13.7503
.(((........)))(	chr19:34949646-34949902(+)$1	1	197	213	13.0796
((((........))))	chr20:43514374-43514639(+)$1	1	185	201	14.5049
((((........))))	chr11:16760198-16760420(+)$1	1	15	31	14.5049
((((........))))	chr20:34302004-34302232(-)$1	1	203	219	14.5049
.(((........)))(	chr19:8531051-8531290(+)$1	1	163	179	12.7955
((((........))).	chr17:27001454-27001656(+)$1	1	2	18	13.8395
((((........))))	chr10:70545803-70546029(+)$1	1	13	29	14.2214
((((........))))	chr5:140032514-140032758(+)$1	1	179	195	14.2214
.(((........)))(	chr16:75668039-75668291(-)$1	1	158	174	13.0952
((((........))))	chr1:150198839-150199116(-)$1	1	160	176	14.5049
((((........))))	chrX:154020322-154020535(-)$1	1	160	176	14.5049
.(((........)))(	chr4:17806090-17806397(-)$1	1	47	63	13.0952
((((........)))(	chr3:10157273-10157604(+)$1	1	117	133	13.0914
((((........))))	chr12:133254124-133254406(-)$1	1	196	212	14.2214
.(((........))).	chr7:156526769-156527051(-)$1	1	113	129	13.9153
((((........))))	chr2:153512715-153513011(-)$1	1	244	260	14.2214
((((........))))	chr7:35943763-35943998(+)$1	1	37	53	14.5049
((((........))).	chr14:102547948-102548166(-)$1	1	128	144	13.8307
.(((........))).	chr17:7480272-7480506(+)$1	1	36	52	13.8774
((((........))))	chr1:53504485-53504716(+)$1	1	210	226	14.5049
((.(........))))	chr21:38456475-38456745(+)$1	1	31	47	14.0286
((((........))))	chr15:64428954-64429295(+)$1	1	247	263	14.2214
((((........))))	chr7:158448811-158449074(-)$1	1	27	43	14.2214
((((........))))	chr12:76442885-76443102(-)$1	1	147	163	14.2214
((((........))))	chr15:89790785-89791019(+)$1	1	73	89	14.5049
((((........))))	chr6:28119938-28120225(+)$1	1	216	232	14.2214
((((........))))	chr14:90871012-90871233(+)$1	1	111	127	14.5049
.(((........))))	chr6:26123908-26124234(-)$1	1	55	71	13.8333
((((........))))	chrX:151130795-151131018(-)$1	1	112	128	14.5049
.(((........))))	chr12:118693167-118693514(-)$1	1	143	159	13.8333
((((........))))	chr15:59185067-59185290(-)$1	1	187	203	14.5049
((((........))))	chr10:98346595-98346877(-)$1	1	52	68	14.5049
.(((........))))	chr19:5609986-5610199(-)$1	1	137	153	13.7887
((.(........).))	chr12:76442115-76442324(-)$1	1	126	142	13.2644
((((........))))	chr15:93541627-93541881(+)$1	1	45	61	14.5049
((((........))))	chr12:76442879-76443081(-)$1	1	126	142	14.2214
.(((........))).	chr1:156303246-156303466(-)$1	1	65	81	13.8774
((((........))))	chr1:51171360-51171646(-)$1	1	39	55	13.1309
((((........))))	chr12:76449793-76449998(-)$1	1	152	168	14.5049
((((........))).	chr17:27001351-27001560(+)$1	1	105	121	14.0197
((.(........).))	chr12:131360542-131360811(+)$1	1	45	61	13.6486
((.(........).))	chr12:131357332-131357557(+)$1	1	133	149	13.7661
((((........))))	chr15:74918041-74918371(+)$1	1	191	207	14.5049
((((........))))	chr1:85117486-85117744(-)$1	1	146	162	14.2214
((.(........))))	chr18:13015226-13015521(+)$1	1	248	264	13.4645
((((........))))	chr11:62650279-62650537(+)$1	1	179	195	14.5049
.(((........))).	chrX:151127458-151127720(-)$1	1	241	257	13.7200
((((........))))	chr11:3047818-3048118(-)$1	1	227	243	14.2214
((((........))).	chr2:242206112-242206414(-)$1	1	37	53	13.6948
((((........))))	chr8:128752539-128752797(+)$1	1	36	52	14.2214
((((........))))	chr6:163876226-163876533(+)$1	1	96	112	14.2214
((((........))))	chr5:140032463-140032714(+)$1	1	230	246	14.2214
((((........))))	chr17:62498464-62498668(-)$1	1	9	25	14.5049
((((........))))	chr3:184044954-184045246(+)$1	1	115	131	14.5049
((((........))))	chr12:56563458-56563677(-)$1	1	127	143	14.2214
((((........))))	chr4:17585005-17585366(+)$1	1	251	267	14.5049
((((........))))	chr9:127998769-127999036(-)$1	1	45	61	14.5049
((((........))))	chr3:101292938-101293195(+)$1	1	93	109	13.1309
((((........))))	chr9:123201819-123202056(-)$1	1	84	100	14.2214
((((........))))	chrX:102933324-102933572(-)$1	1	30	46	14.5049
((((........))))	chr17:56066367-56066679(-)$1	1	184	200	14.5049
((((........))))	chr5:33461161-33461391(+)$1	1	139	155	14.2214
((((........))))	chr1:43132919-43133193(+)$1	1	169	185	14.2214
((((........))))	chr6:160199964-160200251(-)$1	1	51	67	14.2214
.(((........))).	chr17:40133849-40134127(-)$1	1	225	241	13.7679
((((........))).	chr17:27001264-27001518(+)$1	1	192	208	14.0197

#PSSM
d : 0.36	e : 0.30	[ : 0.08	g : 0.05	: : 0.05	! : 0.04	c : 0.04	C : 0.01	f : 0.01	" : 0.01	
d : 0.33	c : 0.30	e : 0.29	g : 0.05	
d : 0.30	e : 0.28	c : 0.28	[ : 0.07	g : 0.05	
d : 0.30	e : 0.28	c : 0.28	a : 0.07	g : 0.05	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.30	e : 0.28	c : 0.28	a : 0.07	g : 0.05	
d : 0.32	c : 0.29	e : 0.28	g : 0.05	] : 0.04	
d : 0.33	c : 0.30	e : 0.29	g : 0.05	
d : 0.35	e : 0.33	] : 0.07	g : 0.05	2 : 0.05	c : 0.05	3 : 0.04	f : 0.01	a : 0.01	

#score	996.9091790523723
#seq	71
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298ZAG_TIA1_UTR_m2_run2.txt

#BEAR
####bb[a!!bb!!cccooooooccc22bb22a]bb22a	chr17:55333779-55334024(+)$1	245	96	135	17.2334
hhhhhhhadddd!!cccooooooccc333dddd]a22hh	chr4:17805671-17805930(-)$1	259	161	200	16.3500
[eeeee!!eeeeeddddoooooodddd333eeeee]eee	chrX:128940077-128940324(-)$1	247	131	170	15.2191
f==========!!ddddoooooodddd==========::	chr1:203278199-203278440(+)$1	241	150	189	16.4910
ggg"""bb[ccc!!cccooooooccc]ccc]bb4444gg	chr5:90664505-90664763(-)$1	258	95	134	18.1439
eeee####dddd####cccmmmmccc333dddd]eeeee	chr8:20077872-20078121(+)$1	249	96	135	13.2968
[iiiiiiiii####cccooooooccc333iiiiiiiii]	chr14:70238180-70238428(+)$1	248	167	206	21.3338
dd[bb[===========oooooo===========]bb]d	chr5:110465165-110465463(+)$1	298	16	55	16.9741
dddd!!eeeee[bb[bboooooobb]bb]eeeee333dd	chr22:22838723-22838983(-)$1	260	209	248	13.9155
ggggeeeeeccc"""bboooooobb4444ccc]eeeee4	chr8:90947121-90947380(-)$1	259	149	188	17.4027
iiiiiiiii"""a[cccooooooccc]a666666iiiii	chr19:3052961-3053215(-)$1	254	87	126	17.2831
!ccc"""cccccccccrrrrrrrrrccc]ccc]ccc22c	chr12:69663873-69664117(+)$1	244	139	178	13.0527
gggggg[ccc"""ddddoooooodddd333cccgggggg	chr8:26268731-26268940(+)$1	209	2	41	18.1046
=============[ddddmmmmdddd]============	chr1:27860707-27860990(-)$1	283	47	86	15.1387
#=============!!cccmmmmccc=============	chr1:35649827-35650120(-)$1	293	157	196	15.6567
ddd[ccc[a!!ffffffooooooffffff333a]ccc]d	chr12:31478556-31478792(-)$1	236	24	63	14.9188
eeeeggggggg[addddmmmmdddd]a333ggggggg]e	chr19:8387122-8387331(+)$1	209	114	153	12.5947
fff"""bb!!ccc!!cccnnnnnccc22ccc22bb333f	chr2:232577764-232577981(+)$1	217	47	86	14.7630
ccc!!eeeee[a####cccmmmmccc333a]eeeee]cc	chr15:41571908-41572190(+)$1	282	36	75	14.4934
ggg!!dddd[ccc!!bboooooobb22ccc]dddd22gg	chr17:25635609-25635817(+)$1	208	53	92	16.1499
eee####bb$$$$$cccooooooccc22bb]eeeee22d	chr14:69846854-69847123(-)$1	269	13	52	17.0409
dd[ffffff[ccc[cccooooooccc]ccc]ffffff]d	chr19:54379333-54379569(+)$1	236	21	60	16.4266
!!ccc$$$$$ccc!!bboooooobb22ccc333ccc22e	chr6:37142717-37142935(+)$1	218	39	78	16.5953
ii[ggggggg!!eeeeeooooooeeeee]ggggggg22i	chr17:66527946-66528199(+)$1	253	65	104	16.0281
'''cccccca[a"""cccnnnnnccc333a]a22ccc]c	chr7:138982554-138982786(+)$1	232	40	79	14.1913
==============cccooooooccc333==========	chr1:47141847-47142099(-)$1	252	184	223	21.6114
fccc!!===========nnnnn===========4444cc	chr12:49086198-49086425(-)$1	227	96	135	14.6265
b!!============bboooooobb4444==========	chr6:32948866-32949095(+)$1	229	3	42	19.8222
=####ccc!!ddddcccooooooccc]dddd]ccc]===	chr7:30407083-30407363(+)$1	280	135	174	17.1468
ggg!!ffffff####bboooooobb4444ffffff]ggg	chr2:152657920-152658190(-)$1	270	5	44	17.3657
"""ggggggg!!eeeeeooooooeeeee22ggggggg]e	chr11:118766793-118767032(-)$1	239	14	53	15.6629
dd"""dddd[bb[ddddooooooddddbb]dddd]dddd	chr7:104754274-104754527(+)$1	253	77	116	13.4388
dd[ggggggg####cccoooooocccggggggg]dddd:	chr5:95128820-95129053(+)$1	233	130	169	16.5940
==!!ccc"""ccc[cccooooooccc]ccc333ccc444	chr5:108670498-108670755(-)$1	257	47	86	19.2262
iiiii####ccc"""bboooooobb333ccc333iiiii	chr2:29023744-29023975(+)$1	231	69	108	19.8744
cc[iiiiiiiii####bbnnnnnbb4444iiiiiiiii3	chr1:46744245-46744471(-)$1	226	94	133	15.8074
========[ccc!!cccpppppppccc22ccc=======	chr11:71710631-71710884(+)$1	253	176	215	13.8111
gggg[eeeee[ffffffooooooffffff]eeeee]ggg	chr1:45976741-45976962(-)$1	221	98	137	14.0015
e!!eeeee!!cccacccooooooccc]a]ccceeeee22	chr17:4848984-4849215(-)$1	231	148	187	17.1507
==========[bbddddnnnnndddd333bb]=======	chr2:20232419-20232636(-)$1	217	22	61	15.3882
bb!!dddd!!ccc[cccoooooocccccc]dddd22bb6	chr2:152332234-152332487(+)$1	253	101	140	14.7462
#dddd"""ccc"""cccooooooccc333ccc22ddddf	chr19:56598755-56598991(-)$1	236	115	154	18.4792
=========bb[cccqqqqqqqqccc333bb22======	chr8:20078763-20079020(+)$1	257	64	103	13.4277
ccccccgggggggbbbboooooobb]bb4444ggggggg	chr22:38879486-38879728(-)$1	242	79	118	15.3190
eee####eeeee"""cccmmmmccc4444eeeee]eeee	chr1:9789902-9790159(-)$1	257	109	148	13.5148
ffffff[ccc[bb[cccooooooccc22bbccc]fffff	chr7:77268625-77268874(+)$1	249	75	114	15.9516
==!!bb!!ccc"""ddddmmmmdddd4444cccbb]===	chr19:47113853-47114073(+)$1	220	101	140	14.2660
dd"""ccc####bb[cccnnnnnccc22bb333ccc22d	chr1:226172661-226172874(-)$1	213	130	169	14.7403
eeee"""dddd!!ddddoooooodddddddd22eeeee]	chr12:104742439-104742680(+)$1	241	175	214	14.4397
b[a[ffffff####cccoooooocccffffffabb]bb]	chr20:49547785-49548000(-)$1	215	92	131	15.4230
ggggggg####eeeeeooooooeeeee333ggggggg:i	chr3:133307593-133307865(+)$1	272	154	193	14.4753

#otherMatches

#Seq PSSM
GGGGGGGUGUGCGAGGCAGCGGGGCUGAGCUAAGCCGAG	chr17:55333779-55334024(+)$1	245	96	135	17.2334
UUCUGAUGGGUCCUAGAAAUCCCUCUCCUGACCACUUGU	chr4:17805671-17805930(-)$1	259	161	200	16.3500
UGCUGCAAGCUUUUUUAAAUUUCUGAACUCAAGGCAGUG	chrX:128940077-128940324(-)$1	247	131	170	15.2191
GCCCACAGACCCAAGAGCUAAUUUUCUGGUUUGUGGGUU	chr1:203278199-203278440(+)$1	241	150	189	16.4910
UUAUUUGGUGCUGAAUAUGUCCUUGUAGGCUCUGUUUUA	chr5:90664505-90664763(-)$1	258	95	134	18.1439
UUCCUUUUGCACUCUCGGUUCCCACCUUUGUGUUGGAGU	chr8:20077872-20078121(+)$1	249	96	135	13.2968
GUUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAAG	chr14:70238180-70238428(+)$1	248	167	206	21.3338
cauauuuuuguauguuuauuuuagaacauauaaacauuu	chr5:110465165-110465463(+)$1	298	16	55	16.9741
GAAAAAAAUGCuguugcuguauuguugcuguauuguCUU	chr22:22838723-22838983(-)$1	260	209	248	13.9155
CAGUGGUGCAGAUGUCACCUACAUGUUAUUCUAGUACUA	chr8:90947121-90947380(-)$1	259	149	188	17.4027
uuuuuuCUUUUUCCAGUAUACUAGCUUGUCUUUUAAGAA	chr19:3052961-3053215(-)$1	254	87	126	17.2831
AAUGGUAUGUAAACUUGUAAAAAUAGAGAUUUGACAGAC	chr12:69663873-69664117(+)$1	244	139	178	13.0527
CGUGUGUGUUUGAUAUUUUUUACGAUAAUUAGCUGCAUG	chr8:26268731-26268940(+)$1	209	2	41	18.1046
GGAGGGAGAAGAACCUCUUGCGGGAGCUUUUUUUUUCUU	chr1:27860707-27860990(-)$1	283	47	86	15.1387
UUUAUGGAUGUUAGCAGUUUAUUGACCUAAUAUUUGUAA	chr1:35649827-35650120(-)$1	293	157	196	15.6567
UACGCUCGUGUUUAGUGUGUAUUUAUUAAUUGGGGAGGG	chr12:31478556-31478792(-)$1	236	24	63	14.9188
AACUGAGAUGCUCCUUUAAAUAAAGCGUUUGUGUUUCAA	chr19:8387122-8387331(+)$1	209	114	153	12.5947
AAAGGAAAUUUGUUUGUAUUUUUUAUUUACAUUUUAUAU	chr2:232577764-232577981(+)$1	217	47	86	14.7630
AGCCCUGCUGCCUUCCCUCCAGCGAGUCUGCCAGCAUGC	chr15:41571908-41572190(+)$1	282	36	75	14.4934
AGUGAUUAUCUCAAAGGGAGAUGCCAAUGGAGUAACAAU	chr17:25635609-25635817(+)$1	208	53	92	16.1499
GGAUCUUGUUCAAUCGGAAACCCCCGUUACCUCCUCUUU	chr14:69846854-69847123(-)$1	269	13	52	17.0409
GCUGUUCUCUUUUGCCCGUAGGUGGGAGGGUGGGGAUUG	chr19:54379333-54379569(+)$1	236	21	60	16.4266
UCAAUGuuauguauuuauuuauuuauuuauuuGGUUCCC	chr6:37142717-37142935(+)$1	218	39	78	16.5953
CAUUGUGAUUUAUAUAUAAGGUAAUGUAGGGUUAUAUUU	chr17:66527946-66528199(+)$1	253	65	104	16.0281
CAAAGGAGACGAAAUGUUUAGUUGACUGAUGGAAUCUAC	chr7:138982554-138982786(+)$1	232	40	79	14.1913
CAGAGGUGUUUAUACUGCAUUCUCAGAUCUAUGAAUAUU	chr1:47141847-47142099(-)$1	252	184	223	21.6114
GGGAUUUUGCUGUGUGUAUAUGAUACAUAGCAGUAACUC	chr12:49086198-49086425(-)$1	227	96	135	14.6265
GUAAGGCUGGGGGGAGGGUGGGGCCGUGGUCCCCUCAGC	chr6:32948866-32949095(+)$1	229	3	42	19.8222
UAAAAGGGCAAGUACAGGAGCAACUGCUGCUACCCAGAA	chr7:30407083-30407363(+)$1	280	135	174	17.1468
ACUCAAUAUCUAAAUCCAGGUCAGGCAUGGGAUAUCAGU	chr2:152657920-152658190(-)$1	270	5	44	17.3657
CCAUuauauaaauauauauauaaauauaaauauauaaau	chr11:118766793-118767032(-)$1	239	14	53	15.6629
UUUUCUCAUUUGAUAUAUAGCAUUGUACAUAUGACAAGU	chr7:104754274-104754527(+)$1	253	77	116	13.4388
UUCUUCUGACCGAAACCAAUGUGGGUGUUAGAAAAAUUA	chr5:95128820-95129053(+)$1	233	130	169	16.5940
GACUUAACCUAAUUUUAUUUUUUUAACAUUUUCUUAUUU	chr5:108670498-108670755(-)$1	257	47	86	19.2262
AAAAUGCAUAUGUCUUUUUUUCUAAUUCCGUUUUGUUUU	chr2:29023744-29023975(+)$1	231	69	108	19.8744
AUGAGGCCCAGCAAACAGGCAUUCUCACAGCUGGGUUUA	chr1:46744245-46744471(-)$1	226	94	133	15.8074
AGCUGGGGUGGGGAAGGAUUGUCACUUGACCCCCCCAGC	chr11:71710631-71710884(+)$1	253	176	215	13.8111
CUACAGGGGGUGGAGAGACCAGCCUUUCUUCCUUUGGUA	chr1:45976741-45976962(-)$1	221	98	137	14.0015
GCUGGGGGCCAGGGCUGGAUGGACAGACACCUCCCCCUA	chr17:4848984-4849215(-)$1	231	148	187	17.1507
ACCCUGAGUACUUUCAGGAAGACUGACUUAAAUAUUCGG	chr2:20232419-20232636(-)$1	217	22	61	15.3882
GCAUGGGUUUUUCUGCAGCUUAUUGUGAAUACCUUGGUU	chr2:152332234-152332487(+)$1	253	101	140	14.7462
CAUCCUUAGAGCUCGAGUCGUUCCUUCCCCUCCUGGAUU	chr19:56598755-56598991(-)$1	236	115	154	18.4792
AGAGAGCAGCCUUUGAAAAUCCCCAAUUUGGUUCUGCUU	chr8:20078763-20079020(+)$1	257	64	103	13.4277
GCUUGGGAUCAGUGCUCUCUAUUGAUGUUCUUGCUGGUC	chr22:38879486-38879728(-)$1	242	79	118	15.3190
UCCUUGUGUCCUUUGUGCUAGUGUAACCCGGGACUGGAA	chr1:9789902-9790159(-)$1	257	109	148	13.5148
GUAGAUUGUUACCUUAAUAUUUUUUGCUGGGACCAUCUA	chr7:77268625-77268874(+)$1	249	75	114	15.9516
UUAAACCGGGCAAUAUUGUGUUCAGUUCAAGCUGUGAAG	chr19:47113853-47114073(+)$1	220	101	140	14.2660
cauuuagguaaugaaucuauccaagaaaucuauccuuuu	chr1:226172661-226172874(-)$1	213	130	169	14.7403
UAGCAGUUGAUUUUUGUCCAAAAGCAAGUCAUGGCUAGA	chr12:104742439-104742680(+)$1	241	175	214	14.4397
CUGAGGGGAGACGCGGGAUCAgcccccucccccgcccgu	chr20:49547785-49548000(-)$1	215	92	131	15.4230
GCAUAUUGCUUGGUUAAUUAAGUAACCUAAAGUAUGCAU	chr3:133307593-133307865(+)$1	272	154	193	14.4753

#DB
....((.(..((..(((......)))..))..).))..)	chr17:55333779-55334024(+)$1	1	96	135	17.2334
((((((((((((..(((......)))...)))).)..))	chr4:17805671-17805930(-)$1	1	161	200	16.3500
.(((((..(((((((((......))))...))))).)))	chrX:128940077-128940324(-)$1	1	131	170	15.2191
)((((((((((..((((......))))))))))))))..	chr1:203278199-203278440(+)$1	1	150	189	16.4910
(((...((.(((..(((......))).))).))....))	chr5:90664505-90664763(-)$1	1	95	134	18.1439
((((....((((....(((....)))...)))).)))))	chr8:20077872-20078121(+)$1	1	96	135	13.2968
.(((((((((....(((......)))...))))))))).	chr14:70238180-70238428(+)$1	1	167	206	21.3338
((.((.(((((((((((......))))))))))).)).)	chr5:110465165-110465463(+)$1	1	16	55	16.9741
((((..(((((.((.((......)).)).)))))...))	chr22:22838723-22838983(-)$1	1	209	248	13.9155
((((((((((((...((......))....))).))))).	chr8:90947121-90947380(-)$1	1	149	188	17.4027
(((((((((...(.(((......))).)......)))))	chr19:3052961-3053215(-)$1	1	87	126	17.2831
.(((...(((((((((.........))).))).)))..)	chr12:69663873-69664117(+)$1	1	139	178	13.0527
((((((.(((...((((......))))...)))))))))	chr8:26268731-26268940(+)$1	1	2	41	18.1046
(((((((((((((.((((....)))).))))))))))))	chr1:27860707-27860990(-)$1	1	47	86	15.1387
.(((((((((((((..(((....))))))))))))))))	chr1:35649827-35650120(-)$1	1	157	196	15.6567
(((.(((.(..((((((......))))))...).))).)	chr12:31478556-31478792(-)$1	1	24	63	14.9188
(((((((((((.(((((....)))).)...))))))).)	chr19:8387122-8387331(+)$1	1	114	153	12.5947
(((...((..(((..(((.....)))..)))..))...)	chr2:232577764-232577981(+)$1	1	47	86	14.7630
(((..(((((.(....(((....)))...).))))).))	chr15:41571908-41572190(+)$1	1	36	75	14.4934
(((..((((.(((..((......))..))).))))..))	chr17:25635609-25635817(+)$1	1	53	92	16.1499
(((....((.....(((......)))..)).)))))..)	chr14:69846854-69847123(-)$1	1	13	52	17.0409
((.((((((.(((.(((......))).))).)))))).)	chr19:54379333-54379569(+)$1	1	21	60	16.4266
..(((.....(((..((......))..)))...)))..)	chr6:37142717-37142935(+)$1	1	39	78	16.5953
((.(((((((..(((((......))))).)))))))..)	chr17:66527946-66528199(+)$1	1	65	104	16.0281
...(((((((.(...(((.....)))...).)..))).)	chr7:138982554-138982786(+)$1	1	40	79	14.1913
(((((((((((((((((......)))...))))))))))	chr1:47141847-47142099(-)$1	1	184	223	21.6114
)(((..(((((((((((.....)))))))))))....))	chr12:49086198-49086425(-)$1	1	96	135	14.6265
(..((((((((((((((......))....))))))))))	chr6:32948866-32949095(+)$1	1	3	42	19.8222
(....(((..(((((((......))).)))).))).)))	chr7:30407083-30407363(+)$1	1	135	174	17.1468
(((..((((((....((......))....)))))).)))	chr2:152657920-152658190(-)$1	1	5	44	17.3657
...(((((((..(((((......)))))..))))))).)	chr11:118766793-118767032(-)$1	1	14	53	15.6629
((...((((.((.((((......)))))).)))).))))	chr7:104754274-104754527(+)$1	1	77	116	13.4388
((.(((((((....(((......)))))))))).)))).	chr5:95128820-95129053(+)$1	1	130	169	16.5940
((..(((...(((.(((......))).)))...)))...	chr5:108670498-108670755(-)$1	1	47	86	19.2262
(((((....(((...((......))...)))...)))))	chr2:29023744-29023975(+)$1	1	69	108	19.8744
((.(((((((((....((.....))....))))))))).	chr1:46744245-46744471(-)$1	1	94	133	15.8074
((((((((.(((..(((.......)))..))))))))))	chr11:71710631-71710884(+)$1	1	176	215	13.8111
((((.(((((.((((((......)))))).))))).)))	chr1:45976741-45976962(-)$1	1	98	137	14.0015
(..(((((..(((((((......))).).))))))))..	chr17:4848984-4849215(-)$1	1	148	187	17.1507
((((((((((.((((((.....))))...)).)))))))	chr2:20232419-20232636(-)$1	1	22	61	15.3882
((..((((..(((.(((......)))))).))))..)).	chr2:152332234-152332487(+)$1	1	101	140	14.7462
.((((...(((...(((......)))...)))..)))))	chr19:56598755-56598991(-)$1	1	115	154	18.4792
(((((((((((.(((........)))...))..))))))	chr8:20078763-20079020(+)$1	1	64	103	13.4277
)))((((((((((((((......)).))....)))))))	chr22:38879486-38879728(-)$1	1	79	118	15.3190
(((....(((((...(((....)))....))))).))))	chr1:9789902-9790159(-)$1	1	109	148	13.5148
((((((.(((.((.(((......)))..))))).)))))	chr7:77268625-77268874(+)$1	1	75	114	15.9516
((..((..(((...((((....))))....))))).)))	chr19:47113853-47114073(+)$1	1	101	140	14.2660
((...(((....((.(((.....)))..))...)))..)	chr1:226172661-226172874(-)$1	1	130	169	14.7403
((((...((((..((((......))))))))..))))).	chr12:104742439-104742680(+)$1	1	175	214	14.4397
(.(.((((((....(((......)))))))))))).)).	chr20:49547785-49548000(-)$1	1	92	131	15.4230
(((((((....(((((......)))))...))))))).(	chr3:133307593-133307865(+)$1	1	154	193	14.4753

#PSSM
= : 0.15	g : 0.13	d : 0.13	e : 0.11	f : 0.07	# : 0.05	i : 0.05	c : 0.05	b : 0.05	[ : 0.03	! : 0.03	h : 0.01	' : 0.01	" : 0.01	
= : 0.17	d : 0.15	g : 0.13	e : 0.11	c : 0.09	i : 0.07	! : 0.05	# : 0.03	f : 0.03	h : 0.01	' : 0.01	" : 0.01	b : 0.01	[ : 0.01	
= : 0.13	g : 0.13	e : 0.11	[ : 0.09	c : 0.09	! : 0.09	i : 0.05	d : 0.05	" : 0.05	# : 0.03	f : 0.03	h : 0.01	' : 0.01	a : 0.01	
= : 0.15	g : 0.13	! : 0.11	e : 0.09	c : 0.09	# : 0.07	" : 0.07	i : 0.07	d : 0.03	[ : 0.03	f : 0.03	h : 0.01	b : 0.01	
= : 0.15	" : 0.11	g : 0.11	! : 0.09	c : 0.09	# : 0.07	i : 0.07	b : 0.05	e : 0.05	f : 0.05	d : 0.03	h : 0.01	[ : 0.01	
= : 0.15	g : 0.11	c : 0.11	e : 0.09	" : 0.09	# : 0.07	f : 0.07	i : 0.05	d : 0.05	b : 0.03	! : 0.03	h : 0.01	[ : 0.01	$ : 0.01	
= : 0.19	g : 0.11	e : 0.09	c : 0.09	# : 0.07	[ : 0.05	i : 0.05	" : 0.05	d : 0.05	f : 0.05	! : 0.03	b : 0.03	h : 0.01	$ : 0.01	
= : 0.19	e : 0.11	c : 0.11	g : 0.09	d : 0.07	b : 0.05	# : 0.05	i : 0.05	f : 0.05	a : 0.03	! : 0.03	" : 0.03	[ : 0.01	$ : 0.01	
= : 0.17	e : 0.11	c : 0.11	! : 0.09	d : 0.09	g : 0.09	i : 0.05	f : 0.05	# : 0.05	[ : 0.03	a : 0.01	b : 0.01	$ : 0.01	" : 0.01	
c : 0.17	= : 0.15	! : 0.11	e : 0.09	g : 0.09	d : 0.05	[ : 0.05	i : 0.03	" : 0.03	$ : 0.03	f : 0.03	# : 0.03	a : 0.01	b : 0.01	
c : 0.27	= : 0.13	# : 0.09	[ : 0.09	d : 0.07	b : 0.05	e : 0.05	! : 0.05	" : 0.03	g : 0.03	$ : 0.01	f : 0.01	i : 0.01	
c : 0.23	= : 0.11	# : 0.09	b : 0.07	! : 0.07	" : 0.07	d : 0.05	e : 0.05	[ : 0.05	f : 0.03	a : 0.03	$ : 0.01	i : 0.01	g : 0.01	
c : 0.17	# : 0.13	" : 0.13	! : 0.11	= : 0.11	e : 0.07	b : 0.07	a : 0.03	f : 0.03	$ : 0.01	d : 0.01	[ : 0.01	g : 0.01	
d : 0.15	! : 0.13	# : 0.13	" : 0.11	[ : 0.11	= : 0.09	b : 0.05	e : 0.05	c : 0.03	f : 0.03	$ : 0.01	a : 0.01	
c : 0.37	d : 0.17	# : 0.07	" : 0.07	! : 0.07	= : 0.05	e : 0.05	[ : 0.03	f : 0.03	b : 0.01	
c : 0.43	d : 0.17	b : 0.15	# : 0.05	e : 0.05	= : 0.03	f : 0.03	! : 0.01	q : 0.01	
c : 0.47	d : 0.17	b : 0.17	= : 0.03	f : 0.03	e : 0.03	r : 0.01	q : 0.01	o : 0.01	
o : 0.68	c : 0.13	d : 0.03	n : 0.03	r : 0.01	m : 0.01	b : 0.01	p : 0.01	q : 0.01	
o : 0.68	n : 0.11	m : 0.07	c : 0.05	r : 0.01	p : 0.01	q : 0.01	
o : 0.68	m : 0.13	n : 0.11	r : 0.01	p : 0.01	q : 0.01	
o : 0.68	m : 0.13	n : 0.11	r : 0.01	p : 0.01	q : 0.01	
o : 0.68	m : 0.11	n : 0.11	r : 0.01	d : 0.01	p : 0.01	q : 0.01	
o : 0.66	d : 0.07	n : 0.07	m : 0.05	r : 0.01	= : 0.01	p : 0.01	q : 0.01	c : 0.01	e : 0.01	
c : 0.47	d : 0.17	b : 0.17	e : 0.05	= : 0.03	f : 0.03	r : 0.01	p : 0.01	
c : 0.49	d : 0.17	b : 0.17	e : 0.05	= : 0.03	f : 0.03	r : 0.01	
c : 0.49	d : 0.15	4 : 0.09	] : 0.05	e : 0.05	= : 0.03	f : 0.03	2 : 0.03	3 : 0.01	
3 : 0.19	2 : 0.13	] : 0.13	4 : 0.11	d : 0.09	= : 0.05	c : 0.05	f : 0.05	e : 0.05	b : 0.03	a : 0.01	g : 0.01	
3 : 0.27	c : 0.13	2 : 0.11	4 : 0.11	= : 0.09	b : 0.05	f : 0.05	a : 0.03	e : 0.03	d : 0.03	g : 0.01	
3 : 0.25	c : 0.15	4 : 0.13	b : 0.09	= : 0.09	] : 0.07	f : 0.05	d : 0.03	2 : 0.03	6 : 0.01	g : 0.01	
c : 0.23	= : 0.13	b : 0.11	3 : 0.09	d : 0.07	] : 0.05	i : 0.03	e : 0.03	a : 0.03	g : 0.03	f : 0.03	4 : 0.03	6 : 0.01	2 : 0.01	
c : 0.19	= : 0.13	d : 0.11	] : 0.11	g : 0.09	e : 0.07	3 : 0.07	i : 0.03	f : 0.03	b : 0.03	2 : 0.01	6 : 0.01	4 : 0.01	
c : 0.15	= : 0.13	e : 0.11	d : 0.09	3 : 0.09	g : 0.09	2 : 0.07	f : 0.05	i : 0.03	] : 0.03	b : 0.01	6 : 0.01	a : 0.01	4 : 0.01	
= : 0.17	e : 0.13	g : 0.11	d : 0.09	2 : 0.09	c : 0.07	3 : 0.07	a : 0.05	i : 0.03	] : 0.03	f : 0.03	b : 0.01	6 : 0.01	
e : 0.17	= : 0.17	] : 0.11	g : 0.11	c : 0.09	b : 0.05	d : 0.05	4 : 0.03	i : 0.03	f : 0.03	2 : 0.03	6 : 0.01	3 : 0.01	
e : 0.15	= : 0.15	c : 0.13	g : 0.11	b : 0.07	i : 0.07	] : 0.05	d : 0.05	f : 0.05	4 : 0.03	a : 0.01	3 : 0.01	2 : 0.01	
= : 0.15	e : 0.13	] : 0.11	c : 0.11	g : 0.11	i : 0.07	2 : 0.05	d : 0.05	b : 0.03	4 : 0.03	3 : 0.03	f : 0.03	
= : 0.19	2 : 0.15	g : 0.13	e : 0.11	i : 0.07	4 : 0.05	b : 0.05	d : 0.05	3 : 0.03	c : 0.03	f : 0.03	] : 0.01	
= : 0.17	2 : 0.13	g : 0.11	] : 0.11	e : 0.09	i : 0.07	d : 0.07	: : 0.03	c : 0.03	b : 0.03	h : 0.01	3 : 0.01	4 : 0.01	f : 0.01	
= : 0.17	d : 0.13	e : 0.11	g : 0.11	i : 0.07	c : 0.07	] : 0.05	f : 0.05	: : 0.03	4 : 0.03	a : 0.01	h : 0.01	3 : 0.01	2 : 0.01	6 : 0.01	

#score	815.1115459272379
#seq	51
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF888SME_DDX52_CDS_m1_run2.txt

#BEAR
dddd"""ccclllccc4444dddd]bb]f	chr4:83350558-83350797(-)$1	239	120	149	10.4521
[ddddccc!!bblllbb22ccc]dddd]b	chr19:4037251-4037475(+)$1	224	119	148	9.7695
dd####cccoooooocccdddd22adddd	chr19:2425978-2426265(-)$1	287	132	161	11.7323
=======[cccmmmmccc]==========	chrM:14301-14521(-)$1	220	24	53	11.1602
f[bb"""bboooooobb333bb]ffffff	chr16:3767279-3767620(-)$1	341	92	121	14.3115
cccbb[ddddmmmmdddd333bb]ccc]d	chr17:7387947-7388219(+)$1	272	146	175	10.4905
iiiiiii[cccmmmmccc22iiiiiiiii	chr1:2125972-2126321(-)$1	349	36	65	11.2347
cc]ccc]==========333bb333ffff	chr15:80215312-80215553(-)$1	241	139	168	9.7959
dddda[ddddmmmmdddd22a]dddd444	chr19:1104622-1104880(+)$1	258	204	233	9.1577
==========nnnnn==========ffff	chrM:14167-14397(-)$1	230	172	201	10.6678
eee[bb[bboooooobb333bb]eeeeeb	chr7:933171-933479(+)$1	308	267	296	13.6608
e"""bb!!ccclllccc333bb]eeeee]	chr6:3259155-3259417(+)$1	262	179	208	13.0042
dd[bb[cccooooooccc22bb]dddd]e	chrM:14249-14477(-)$1	228	112	141	16.8060
ggggg[ccc[allla]ccc]ggggggg]b	chr12:123997687-123998013(-)$1	326	182	211	11.0857
ee[bb[bb[bbnnnnnbb22bb]bb]eee	chr16:89367233-89367494(-)$1	261	184	213	10.5943
eeeee!!bboooooobb22eeeee22eee	chr9:131873722-131874006(+)$1	284	57	86	10.4733
dd[bb[cccooooooccc22bb]dddd]e	chrM:14204-14416(-)$1	212	51	80	16.8060
dd[bb[cccooooooccc22bb]dddd]e	chrM:14277-14487(-)$1	210	122	151	16.8060
dd[bb[cccooooooccc22bb]dddd]e	chrM:14216-14424(-)$1	208	59	88	16.8060
ffccc[cccooooooccc]ccc]ffffff	chr8:145149893-145150124(+)$1	231	178	207	12.9297
cc[bb[ccclllccc]bb]ccc]dddd]b	chr5:154135533-154135767(+)$1	234	33	62	11.0333
ff[bb!!cccmmmmccc4444bb22ffff	chrM:14367-14601(-)$1	234	132	161	11.6530
d!!bb####annnnna4444bb22dddd7	chr2:54197770-54198043(-)$1	273	31	60	12.0363
ffffffcccooooooccc333ffffff]f	chr19:1416346-1416584(+)$1	238	191	220	12.8732
b[bb!!bboooooobb]bb]bb22ccc]c	chr1:22263565-22263826(-)$1	261	85	114	10.3776
dd[bb[cccooooooccc22bb]dddd]e	chrM:14224-14449(-)$1	225	84	113	16.8060
=======[cccmmmmccc]==========	chrM:14287-14501(-)$1	214	4	33	11.1602
ee!!ccc[bbnnnnnbb4444ccceeeee	chr1:22155946-22156187(-)$1	241	121	150	10.3818

#otherMatches

#Seq PSSM
GGGCCCAGCGCCACGUCACCGCCCAGCAG	chr4:83350558-83350797(-)$1	239	120	149	10.4521
GGCUCCUCUCGAAGAUCCUGAGCGAGUGU	chr19:4037251-4037475(+)$1	224	119	148	9.7695
UCCUGUUGCUUUCACGUAGAGUCUCGGCC	chr19:2425978-2426265(-)$1	287	132	161	11.7323
UUAGGGGGAAUGAUGGUUGUCUUUGGAUA	chrM:14301-14521(-)$1	220	24	53	11.1602
GGCGCUCUGGGAGUACGACAUGGCGCGCG	chr16:3767279-3767620(-)$1	341	92	121	14.3115
GUGGCCCCCCCUCGGGGGACAGCGCAUGC	chr17:7387947-7388219(+)$1	272	146	175	10.4905
CCUCGCUGCAGAGGUCUGGAGGCggggcc	chr1:2125972-2126321(-)$1	349	36	65	11.2347
CUGGUCGGGCGCCUGGCUUUGUGUAGCCA	chr15:80215312-80215553(-)$1	241	139	168	9.7959
GCCCCAGCGUGCAGGCGCAGGAGGGCGCG	chr19:1104622-1104880(+)$1	258	204	233	9.1577
UUGAUUAGUAGUGGUUACUGGUUGAACAU	chrM:14167-14397(-)$1	230	172	201	10.6678
CCAUGUACAACGAGGUGAGAGCUUGGGGC	chr7:933171-933479(+)$1	308	267	296	13.6608
CACUUCCACGUCAUGCGGCUGACGGACUC	chr6:3259155-3259417(+)$1	262	179	208	13.0042
CUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14249-14477(-)$1	228	112	141	16.8060
GAGUUUGUGGCUUUGGCACUGACUUCUGU	chr12:123997687-123998013(-)$1	326	182	211	11.0857
UGGGCCGAAGCUGCCUGCCCUCUGCACGU	chr16:89367233-89367494(-)$1	261	184	213	10.5943
CUCGGAGCCUUUGGUGGAGCCGGGGAGAG	chr9:131873722-131874006(+)$1	284	57	86	10.4733
CUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14204-14416(-)$1	212	51	80	16.8060
CUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14277-14487(-)$1	210	122	151	16.8060
CUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14216-14424(-)$1	208	59	88	16.8060
cgugcccggggUCUGCUGUGCAGCGCGCG	chr8:145149893-145150124(+)$1	231	178	207	12.9297
GCCGAAGGCCCGGCCAUCAGCGACGGGGA	chr5:154135533-154135767(+)$1	234	33	62	11.0333
AUACUACAGCGAUGGCUAUUGAGGAGUAU	chrM:14367-14601(-)$1	234	132	161	11.6530
CGACGAAGACGCGGAGGAGGCGGAGCCCg	chr2:54197770-54198043(-)$1	273	31	60	12.0363
UAAGGCCCCGUGCCUGGGUAAGCCUUGUG	chr19:1416346-1416584(+)$1	238	191	220	12.8732
gagcgagcgagagagcggcgcgggccggg	chr1:22263565-22263826(-)$1	261	85	114	10.3776
CUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14224-14449(-)$1	225	84	113	16.8060
UUAGGGGGAAUGAUGGUUGUCUUUGGAUA	chrM:14287-14501(-)$1	214	4	33	11.1602
UGCUGGCUCCUACCUGGCACUGCCCGCCC	chr1:22155946-22156187(-)$1	241	121	150	10.3818

#DB
((((...(((...)))....)))).)).)	chr4:83350558-83350797(-)$1	1	120	149	10.4521
.(((((((..((...))..))).)))).)	chr19:4037251-4037475(+)$1	1	119	148	9.7695
((....(((......)))))))..)))))	chr19:2425978-2426265(-)$1	1	132	161	11.7323
(((((((.(((....))).))))))))))	chrM:14301-14521(-)$1	1	24	53	11.1602
(.((...((......))...)).))))))	chr16:3767279-3767620(-)$1	1	92	121	14.3115
(((((.((((....))))...)).))).)	chr17:7387947-7388219(+)$1	1	146	175	10.4905
(((((((.(((....)))..)))))))))	chr1:2125972-2126321(-)$1	1	36	65	11.2347
)).))).))))))))))...))...))))	chr15:80215312-80215553(-)$1	1	139	168	9.7959
(((((.((((....))))..).))))...	chr19:1104622-1104880(+)$1	1	204	233	9.1577
((((((((((.....))))))))))((((	chrM:14167-14397(-)$1	1	172	201	10.6678
(((.((.((......))...)).))))))	chr7:933171-933479(+)$1	1	267	296	13.6608
(...((..(((...)))...)).))))).	chr6:3259155-3259417(+)$1	1	179	208	13.0042
((.((.(((......)))..)).)))).)	chrM:14249-14477(-)$1	1	112	141	16.8060
(((((.(((.(...).))).))))))).)	chr12:123997687-123998013(-)$1	1	182	211	11.0857
((.((.((.((.....))..)).)).)))	chr16:89367233-89367494(-)$1	1	184	213	10.5943
(((((..((......))..)))))..)))	chr9:131873722-131874006(+)$1	1	57	86	10.4733
((.((.(((......)))..)).)))).)	chrM:14204-14416(-)$1	1	51	80	16.8060
((.((.(((......)))..)).)))).)	chrM:14277-14487(-)$1	1	122	151	16.8060
((.((.(((......)))..)).)))).)	chrM:14216-14424(-)$1	1	59	88	16.8060
(((((.(((......))).))).))))))	chr8:145149893-145150124(+)$1	1	178	207	12.9297
((.((.(((...))).)).))).)))).)	chr5:154135533-154135767(+)$1	1	33	62	11.0333
((.((..(((....)))....))..))))	chrM:14367-14601(-)$1	1	132	161	11.6530
(..((....(.....)....))..)))).	chr2:54197770-54198043(-)$1	1	31	60	12.0363
(((((((((......)))...)))))).)	chr19:1416346-1416584(+)$1	1	191	220	12.8732
(.((..((......)).)).))..))).)	chr1:22263565-22263826(-)$1	1	85	114	10.3776
((.((.(((......)))..)).)))).)	chrM:14224-14449(-)$1	1	84	113	16.8060
(((((((.(((....))).))))))))))	chrM:14287-14501(-)$1	1	4	33	11.1602
((..(((.((.....))....))))))))	chr1:22155946-22156187(-)$1	1	121	150	10.3818

#PSSM
d : 0.32	e : 0.17	f : 0.14	= : 0.10	c : 0.10	[ : 0.03	i : 0.03	g : 0.03	b : 0.03	
d : 0.32	e : 0.14	= : 0.10	c : 0.10	f : 0.10	[ : 0.07	i : 0.03	" : 0.03	g : 0.03	! : 0.03	
[ : 0.28	d : 0.10	= : 0.10	b : 0.07	c : 0.07	e : 0.07	! : 0.07	# : 0.03	i : 0.03	] : 0.03	" : 0.03	g : 0.03	f : 0.03	
b : 0.42	d : 0.10	= : 0.10	c : 0.07	# : 0.03	i : 0.03	[ : 0.03	" : 0.03	g : 0.03	e : 0.03	f : 0.03	! : 0.03	
b : 0.42	= : 0.10	c : 0.10	" : 0.07	d : 0.03	# : 0.03	i : 0.03	a : 0.03	g : 0.03	e : 0.03	f : 0.03	! : 0.03	
[ : 0.39	c : 0.10	= : 0.10	! : 0.10	" : 0.07	# : 0.07	b : 0.07	i : 0.03	f : 0.03	
c : 0.42	= : 0.10	! : 0.10	" : 0.07	d : 0.07	b : 0.07	i : 0.03	] : 0.03	[ : 0.03	# : 0.03	
c : 0.46	b : 0.17	[ : 0.14	d : 0.07	= : 0.07	! : 0.03	# : 0.03	
c : 0.57	b : 0.14	d : 0.07	= : 0.07	! : 0.03	[ : 0.03	# : 0.03	o : 0.03	
o : 0.42	c : 0.21	d : 0.07	= : 0.07	b : 0.07	! : 0.03	[ : 0.03	l : 0.03	a : 0.03	
o : 0.42	c : 0.14	m : 0.10	n : 0.10	l : 0.07	b : 0.07	= : 0.03	a : 0.03	
o : 0.42	m : 0.21	l : 0.14	n : 0.14	b : 0.03	= : 0.03	
o : 0.42	m : 0.21	l : 0.14	n : 0.14	= : 0.03	c : 0.03	
o : 0.42	m : 0.21	n : 0.14	l : 0.10	c : 0.07	= : 0.03	
o : 0.39	c : 0.14	n : 0.14	m : 0.10	d : 0.07	l : 0.03	= : 0.03	a : 0.03	b : 0.03	
c : 0.49	b : 0.21	d : 0.07	= : 0.07	] : 0.07	n : 0.03	a : 0.03	
c : 0.49	b : 0.24	4 : 0.07	d : 0.07	= : 0.07	] : 0.03	
c : 0.42	4 : 0.14	3 : 0.14	b : 0.10	2 : 0.07	d : 0.07	= : 0.03	
2 : 0.35	3 : 0.21	4 : 0.14	] : 0.14	d : 0.03	= : 0.03	c : 0.03	b : 0.03	
2 : 0.28	3 : 0.21	4 : 0.14	c : 0.10	= : 0.10	] : 0.07	d : 0.03	e : 0.03	
b : 0.42	c : 0.10	= : 0.10	d : 0.07	3 : 0.07	4 : 0.07	i : 0.03	a : 0.03	g : 0.03	e : 0.03	
b : 0.49	c : 0.14	= : 0.10	d : 0.07	i : 0.03	] : 0.03	g : 0.03	e : 0.03	f : 0.03	
] : 0.42	2 : 0.10	= : 0.10	d : 0.07	b : 0.07	i : 0.03	3 : 0.03	g : 0.03	e : 0.03	f : 0.03	c : 0.03	
d : 0.32	2 : 0.14	= : 0.10	f : 0.10	e : 0.10	] : 0.03	i : 0.03	3 : 0.03	g : 0.03	b : 0.03	c : 0.03	
d : 0.32	= : 0.10	f : 0.10	e : 0.10	c : 0.07	2 : 0.07	] : 0.03	a : 0.03	i : 0.03	3 : 0.03	g : 0.03	b : 0.03	
d : 0.35	f : 0.21	e : 0.10	= : 0.07	c : 0.07	b : 0.03	i : 0.03	g : 0.03	] : 0.03	2 : 0.03	
d : 0.32	f : 0.21	e : 0.17	= : 0.07	c : 0.07	b : 0.03	i : 0.03	4 : 0.03	g : 0.03	
] : 0.42	f : 0.17	e : 0.17	d : 0.07	= : 0.07	i : 0.03	4 : 0.03	
e : 0.28	f : 0.24	b : 0.14	d : 0.07	= : 0.07	i : 0.03	4 : 0.03	] : 0.03	7 : 0.03	c : 0.03	

#score	344.0670175889856
#seq	28
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_CDS_m2_run2.txt

#BEAR
####ccc[bbnnnnnbb22ccc3	chr1:2160056-2160328(+)$1	272	139	162	11.5645
cccc[eeeeennnnneeeee]cc	chr1:27023025-27023288(+)$1	263	144	167	11.7841
####ccccccnnnnnccc333cc	chr11:607176-607427(+)$1	251	183	206	12.8524
[a####ddddnnnnndddd4444	chr17:43227199-43227497(+)$1	298	161	184	14.3055
c!!dddd[bbnnnnnbb]dddd6	chr8:94752512-94752806(-)$1	294	199	222	10.8089
!ccc!!ddddnnnnnddddccc2	chr8:94746592-94746929(-)$1	337	33	56	13.7282
b[ccc[ddddnnnnndddd]ccc	chr22:45724171-45724398(+)$1	227	76	99	13.6601
eeee!!ddddnnnnndddd22ee	chr6:31868001-31868253(-)$1	252	202	225	13.3372
eeeee[a[bbnnnnnbb]a333e	chr6:1313306-1313544(+)$1	238	15	38	12.1066
!!bbffffffnnnnnffffff44	chr6:138752171-138752414(-)$1	243	144	167	10.1652
bb[a!!ddddnnnnndddd]a]b	chr19:50099335-50099594(+)$1	259	220	243	13.5626
ccc"""ddddnnnnndddd333c	chr17:79860493-79860770(-)$1	277	38	61	14.4041
==========nnnnn========	chrM:14155-14395(-)$1	240	170	193	12.3253
b!!cccddddnnnnndddd6666	chr6:31599538-31599804(+)$1	266	178	201	11.8177
ee:ddddcccnnnnnccc]dddd	chr14:105715428-105715730(-)$1	302	152	175	10.1515
eeeee[a!!annnnna4444a]e	chr20:61443936-61444221(+)$1	285	41	64	12.1202
gggggg[cccnnnnncccggggg	chr19:1912527-1912836(+)$1	309	153	176	11.8652
dd[bb[ddddnnnnnddddbbdd	chr6:138745216-138745473(-)$1	257	33	56	12.1781
[cccffffffnnnnnffffff]c	chr8:94748226-94748487(-)$1	261	28	51	10.3134
bb[gggggggnnnnnggggggg]	chr2:171570277-171570567(-)$1	290	137	160	11.2450
fff[a[ddddnnnnndddd]a]f	chr16:9185806-9186090(+)$1	284	151	174	13.3085
eddddeeeeennnnneeeee]dd	chr8:144672182-144672445(-)$1	263	15	38	10.7340
dddd!!a[bbnnnnnbb]a]ddd	chr16:89348397-89348653(-)$1	256	180	203	11.4791
##eeeee[bbnnnnnbb]eeeee	chr17:42255524-42255827(-)$1	303	62	85	10.7790
ggggg[a[bbnnnnnbbaggggg	chr6:31599833-31600091(+)$1	258	2	25	11.6764
gggggddddoooooodddd]ggg	chr17:37618278-37618527(+)$1	249	20	43	8.4104
eee!!bb!!annnnna22bb22e	chr5:139493777-139494046(+)$1	269	180	203	10.2270
eeee!!ddddnnnnndddd22ee	chr22:50279969-50280274(+)$1	305	103	126	13.3372
[ccc!!ddddllldddd22ccc]	chr22:45126647-45126881(+)$1	234	160	183	8.0983
eeeee[ddddnnnnndddd4444	chr6:138754338-138754594(-)$1	256	67	90	13.5605
!!bb[eeeeennnnneeeee]bb	chr3:32932361-32932613(+)$1	252	26	49	11.0727
eeccc!!cccnnnnnccc22ccc	chr10:77159156-77159405(-)$1	249	203	226	12.3390
fff"""ddddnnnnnddddffff	chr16:89346582-89346830(-)$1	248	132	155	12.9042
ee[gggggggnnnnnggggggg6	chr19:57325904-57326156(-)$1	252	114	137	11.1864
[ccc####bbnnnnnbbccceee	chr19:59074102-59074382(+)$1	280	218	241	11.5628
bb"""eeeeennnnneeeee333	chr9:138379041-138379297(+)$1	256	139	162	12.0125
$ccc"""cccnnnnnccc]ccce	chr19:4048131-4048399(-)$1	268	116	139	12.4244
ccc"""ddddllldddd333ccc	chr4:982812-983089(-)$1	277	183	206	8.6205
bb[bb[ddddnnnnndddd]bb]	chr22:41832354-41832607(-)$1	253	47	70	12.6100
"""bb[ddddnnnnndddd]bbb	chr8:94746313-94746586(-)$1	273	160	183	12.8169
ggggggddddnnnnndddd:eee	chr10:43882509-43882767(-)$1	258	129	152	11.9329
dddd[ccc[annnnna]ccc]dd	chr1:27022733-27023026(+)$1	293	45	68	11.3282
cc[bbccc[annnnna]ccc]bb	chr8:144940504-144940777(-)$1	273	72	95	11.1327
b[ccc[ddddnnnnndddd]ccc	chr22:45723781-45724047(+)$1	266	138	161	13.6601

#otherMatches

#Seq PSSM
ggagcgCACCAUGGAGGCGGCGG	chr1:2160056-2160328(+)$1	272	139	162	11.5645
cggGCCCGGCGCGGAGCCGGACC	chr1:27023025-27023288(+)$1	263	144	167	11.7841
CCAACAAGCACACCUUGCCCCUU	chr11:607176-607427(+)$1	251	183	206	12.8524
GGAGACGUACGAGCGGUACCACA	chr17:43227199-43227497(+)$1	298	161	184	14.3055
CAACUUUGGCCUGGCGCGAAAGA	chr8:94752512-94752806(-)$1	294	199	222	10.8089
ACCUAGGGAGGAAGACUUCAGGC	chr8:94746592-94746929(-)$1	337	33	56	13.7282
CCUGGACUUGAAGGACAAGACCA	chr22:45724171-45724398(+)$1	227	76	99	13.6601
CGUGGAGAAGCUGGUCUUCCACA	chr6:31868001-31868253(-)$1	252	202	225	13.3372
UCGCCAUGGCCAUCCGCGACUCG	chr6:1313306-1313544(+)$1	238	15	38	12.1066
AAGCAUUGCAGAUGGUGCAGUUG	chr6:138752171-138752414(-)$1	243	144	167	10.1652
CCUCAGGGGCGGACGGCUUGGUG	chr19:50099335-50099594(+)$1	259	220	243	13.5626
GCGGAGUAGGGGAGACCUGGGGC	chr17:79860493-79860770(-)$1	277	38	61	14.4041
UUGAUUAGUAGUGGUUACUGGUU	chrM:14155-14395(-)$1	240	170	193	12.3253
CGAGGGUUCAGAGUAUGAGGAAA	chr6:31599538-31599804(+)$1	266	178	201	11.8177
GGCGGGCACCGUCCUGGUCGCCC	chr14:105715428-105715730(-)$1	302	152	175	10.1515
UGGGGGCAGGGUGGACGAGGGGC	chr20:61443936-61444221(+)$1	285	41	64	12.1202
GGGCCGUGGUAGUGGACCCGGCC	chr19:1912527-1912836(+)$1	309	153	176	11.8652
GGAGCCUGUGGACAGCAUAGCCC	chr6:138745216-138745473(-)$1	257	33	56	12.1781
AGGAGGGUUUAUCAAGGAUUCAU	chr8:94748226-94748487(-)$1	261	28	51	10.3134
CCGCGGGGUGCUCACCGCCCUGG	chr2:171570277-171570567(-)$1	290	137	160	11.2450
CUGGUUCUCCAAGUGGGAGCGGC	chr16:9185806-9186090(+)$1	284	151	174	13.3085
UUGACUUCGAAGUCCUCGAAUGU	chr8:144672182-144672445(-)$1	263	15	38	10.7340
CUGCGGCAUCACAGGGACGAGCA	chr16:89348397-89348653(-)$1	256	180	203	11.4791
AUGGGGUUCACUGGAUGCACCCC	chr17:42255524-42255827(-)$1	303	62	85	10.7790
AGGGAACACUCACCCAGGUCCCU	chr6:31599833-31600091(+)$1	258	2	25	11.6764
CCCUUCUUCAGGUCAGGGGAAAG	chr17:37618278-37618527(+)$1	249	20	43	8.4104
GCGGGUGGACAUCCAGAACAAGC	chr5:139493777-139494046(+)$1	269	180	203	10.2270
GAUCAGCUGCGACCAGUGGGAGG	chr22:50279969-50280274(+)$1	305	103	126	13.3372
UCCCUGUCAUGUGAUGGAUGGGC	chr22:45126647-45126881(+)$1	234	160	183	8.0983
GAUGCUGGCUUCCAUAGUCUUCC	chr6:138754338-138754594(-)$1	256	67	90	13.5605
GACACUGUGCAACCAGCACAUUG	chr3:32932361-32932613(+)$1	252	26	49	11.0727
GCGUCUCCGCCGUCCGUGAUGAC	chr10:77159156-77159405(-)$1	249	203	226	12.3390
CUGUGUAGCCGCUGUGGCUCAGG	chr16:89346582-89346830(-)$1	248	132	155	12.9042
CCAGAUGGCUGAGGAAGCUAUCA	chr19:57325904-57326156(-)$1	252	114	137	11.1864
ACGGAAAGGCUGUUCGCCCGUGU	chr19:59074102-59074382(+)$1	280	218	241	11.5628
CCAGCGGCGGUGUCUCCGCCAAG	chr9:138379041-138379297(+)$1	256	139	162	12.0125
CCGGCCCCACUGACCGUGCCCGC	chr19:4048131-4048399(-)$1	268	116	139	12.4244
CGGCUUCCACACAGUGGUCAUCG	chr4:982812-983089(-)$1	277	183	206	8.6205
ggugguggcucacccagccucuu	chr22:41832354-41832607(-)$1	253	47	70	12.6100
AUUUCCGGAGACCACCUCCAGAG	chr8:94746313-94746586(-)$1	273	160	183	12.8169
GGCCUGGUGCCUACAGCACAGGC	chr10:43882509-43882767(-)$1	258	129	152	11.9329
gcccgcccgggcggguggggagg	chr1:27022733-27023026(+)$1	293	45	68	11.3282
CCAGGAGAAGAUGAGCAUCUACC	chr8:144940504-144940777(-)$1	273	72	95	11.1327
CCUGGACUUGAAGGACAAGACCA	chr22:45723781-45724047(+)$1	266	138	161	13.6601

#DB
....(((.((.....))..))).	chr1:2160056-2160328(+)$1	1	139	162	11.5645
)(((.(((((.....))))).))	chr1:27023025-27023288(+)$1	1	144	167	11.7841
....((((((.....)))...))	chr11:607176-607427(+)$1	1	183	206	12.8524
.(....((((.....))))....	chr17:43227199-43227497(+)$1	1	161	184	14.3055
(..((((.((.....)).)))).	chr8:94752512-94752806(-)$1	1	199	222	10.8089
.(((..((((.....))))))).	chr8:94746592-94746929(-)$1	1	33	56	13.7282
(.(((.((((.....)))).)))	chr22:45724171-45724398(+)$1	1	76	99	13.6601
((((..((((.....))))..))	chr6:31868001-31868253(-)$1	1	202	225	13.3372
(((((.(.((.....)).)...)	chr6:1313306-1313544(+)$1	1	15	38	12.1066
..((((((((.....))))))..	chr6:138752171-138752414(-)$1	1	144	167	10.1652
((.(..((((.....)))).).)	chr19:50099335-50099594(+)$1	1	220	243	13.5626
(((...((((.....))))...)	chr17:79860493-79860770(-)$1	1	38	61	14.4041
((((((((((.....))))))))	chrM:14155-14395(-)$1	1	170	193	12.3253
(..(((((((.....))))....	chr6:31599538-31599804(+)$1	1	178	201	11.8177
)).(((((((.....))).))))	chr14:105715428-105715730(-)$1	1	152	175	10.1515
(((((.(..(.....)....).)	chr20:61443936-61444221(+)$1	1	41	64	12.1202
((((((.(((.....))))))))	chr19:1912527-1912836(+)$1	1	153	176	11.8652
((.((.((((.....))))))))	chr6:138745216-138745473(-)$1	1	33	56	12.1781
.(((((((((.....)))))).)	chr8:94748226-94748487(-)$1	1	28	51	10.3134
((.(((((((.....))))))).	chr2:171570277-171570567(-)$1	1	137	160	11.2450
(((.(.((((.....)))).).)	chr16:9185806-9186090(+)$1	1	151	174	13.3085
((((((((((.....))))).))	chr8:144672182-144672445(-)$1	1	15	38	10.7340
((((..(.((.....)).).)))	chr16:89348397-89348653(-)$1	1	180	203	11.4791
..(((((.((.....)).)))))	chr17:42255524-42255827(-)$1	1	62	85	10.7790
(((((.(.((.....))))))))	chr6:31599833-31600091(+)$1	1	2	25	11.6764
(((((((((......)))).)))	chr17:37618278-37618527(+)$1	1	20	43	8.4104
(((..((..(.....)..))..)	chr5:139493777-139494046(+)$1	1	180	203	10.2270
((((..((((.....))))..))	chr22:50279969-50280274(+)$1	1	103	126	13.3372
.(((..((((...))))..))).	chr22:45126647-45126881(+)$1	1	160	183	8.0983
(((((.((((.....))))....	chr6:138754338-138754594(-)$1	1	67	90	13.5605
..((.(((((.....))))).))	chr3:32932361-32932613(+)$1	1	26	49	11.0727
))(((..(((.....)))..)))	chr10:77159156-77159405(-)$1	1	203	226	12.3390
(((...((((.....))))))))	chr16:89346582-89346830(-)$1	1	132	155	12.9042
((.(((((((.....))))))).	chr19:57325904-57326156(-)$1	1	114	137	11.1864
.(((....((.....))))))))	chr19:59074102-59074382(+)$1	1	218	241	11.5628
((...(((((.....)))))...	chr9:138379041-138379297(+)$1	1	139	162	12.0125
.(((...(((.....))).))))	chr19:4048131-4048399(-)$1	1	116	139	12.4244
(((...((((...))))...)))	chr4:982812-983089(-)$1	1	183	206	8.6205
((.((.((((.....)))).)).	chr22:41832354-41832607(-)$1	1	47	70	12.6100
...((.((((.....)))).)))	chr8:94746313-94746586(-)$1	1	160	183	12.8169
))))))((((.....)))).(((	chr10:43882509-43882767(-)$1	1	129	152	11.9329
((((.(((.(.....).))).))	chr1:27022733-27023026(+)$1	1	45	68	11.3282
((.(((((.(.....).))).))	chr8:144940504-144940777(-)$1	1	72	95	11.1327
(.(((.((((.....)))).)))	chr22:45723781-45724047(+)$1	1	138	161	13.6601

#PSSM
e : 0.22	b : 0.15	c : 0.11	[ : 0.09	g : 0.09	# : 0.06	! : 0.06	d : 0.06	f : 0.04	= : 0.02	$ : 0.02	" : 0.02	
c : 0.20	e : 0.20	! : 0.09	b : 0.09	g : 0.09	d : 0.09	# : 0.06	[ : 0.04	f : 0.04	a : 0.02	= : 0.02	" : 0.02	
c : 0.25	e : 0.15	[ : 0.13	g : 0.09	# : 0.06	d : 0.06	! : 0.04	b : 0.04	f : 0.04	" : 0.04	= : 0.02	: : 0.02	
c : 0.22	e : 0.13	b : 0.13	g : 0.13	d : 0.11	" : 0.09	# : 0.06	a : 0.02	= : 0.02	[ : 0.02	! : 0.02	
! : 0.15	c : 0.13	g : 0.13	" : 0.11	e : 0.09	b : 0.09	[ : 0.06	d : 0.06	# : 0.04	f : 0.04	= : 0.02	a : 0.02	
[ : 0.22	! : 0.15	c : 0.11	e : 0.11	" : 0.09	g : 0.09	d : 0.06	# : 0.04	f : 0.04	= : 0.02	b : 0.02	
d : 0.47	e : 0.11	c : 0.09	a : 0.09	f : 0.04	g : 0.04	= : 0.02	[ : 0.02	b : 0.02	! : 0.02	# : 0.02	" : 0.02	
d : 0.43	c : 0.15	[ : 0.13	e : 0.09	f : 0.04	! : 0.04	g : 0.04	= : 0.02	# : 0.02	
d : 0.43	b : 0.15	c : 0.11	e : 0.09	f : 0.04	! : 0.04	g : 0.04	[ : 0.04	= : 0.02	
d : 0.40	b : 0.15	c : 0.11	e : 0.09	a : 0.09	f : 0.04	g : 0.04	= : 0.02	o : 0.02	
n : 0.93	l : 0.04	o : 0.02	
n : 0.93	l : 0.04	o : 0.02	
n : 0.93	l : 0.04	o : 0.02	
n : 0.93	d : 0.04	o : 0.02	
n : 0.93	d : 0.04	o : 0.02	
d : 0.43	b : 0.15	c : 0.11	e : 0.09	a : 0.09	f : 0.04	g : 0.04	= : 0.02	
d : 0.43	b : 0.15	c : 0.11	e : 0.09	f : 0.04	g : 0.04	] : 0.04	= : 0.02	4 : 0.02	2 : 0.02	
d : 0.38	c : 0.18	e : 0.09	] : 0.09	2 : 0.06	f : 0.04	g : 0.04	= : 0.02	4 : 0.02	a : 0.02	3 : 0.02	
d : 0.40	e : 0.11	g : 0.09	2 : 0.06	c : 0.06	3 : 0.04	a : 0.04	f : 0.04	] : 0.04	= : 0.02	4 : 0.02	b : 0.02	
] : 0.18	c : 0.15	e : 0.11	3 : 0.09	g : 0.09	4 : 0.06	2 : 0.06	f : 0.06	d : 0.04	b : 0.04	= : 0.02	6 : 0.02	: : 0.02	
c : 0.18	] : 0.11	g : 0.11	3 : 0.09	d : 0.06	2 : 0.06	f : 0.06	a : 0.06	b : 0.06	e : 0.06	4 : 0.04	= : 0.02	6 : 0.02	
c : 0.22	d : 0.13	e : 0.11	g : 0.11	] : 0.09	b : 0.09	4 : 0.06	3 : 0.06	= : 0.02	6 : 0.02	2 : 0.02	f : 0.02	
e : 0.20	c : 0.18	d : 0.11	b : 0.09	4 : 0.06	6 : 0.06	g : 0.06	] : 0.06	3 : 0.04	f : 0.04	2 : 0.02	= : 0.02	

#score	521.5116603380955
#seq	44
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF149CJJ_FXR2_CDS_m2_run1.txt

#BEAR
dddd[aqqqqqqqqa]ddd	chr14:31583113-31583363(-)$1	250	204	223	13.9220
%%ddddqqqqqqqqdddd]	chr9:134330431-134330652(+)$1	221	183	202	14.8913
e"""bbqqqqqqqqbb333	chr16:3779043-3779294(-)$1	251	19	38	13.3113
!!ddddqqqqqqqqdddd]	chr5:14387544-14387763(+)$1	219	19	38	16.0936
[eeeeeqqqqqqqqeeeee	chr6:44220702-44220916(+)$1	214	7	26	15.0177
::ddddqqqqqqqqddddc	chr2:39224393-39224667(-)$1	274	117	136	13.6140
:eeeeeqqqqqqqqeeeee	chr2:109400177-109400452(+)$1	275	5	24	14.1018
dd[cccqqqqqqqqccc]d	chr2:242179428-242179637(-)$1	209	3	22	13.8869
ccc!!aqqqqqqqqa22cc	chr21:34925152-34925452(+)$1	300	127	146	13.1311
ccccccqqqqqqqqccc77	chr9:95040410-95040661(-)$1	251	99	118	13.2510
"""cccqqqqqqqqcccff	chr4:144469093-144469371(+)$1	278	217	236	14.6446
:eeeeeqqqqqqqqeeeee	chr14:39648427-39648661(+)$1	234	3	22	14.1018
ggggggqqqqqqqqggggg	chr2:48027848-48028114(+)$1	266	16	35	13.6425
ccc!!aqqqqqqqqa22cc	chr17:48823798-48824166(+)$1	368	226	245	13.1311
[eeeeeqqqqqqqqeeeee	chr2:44201188-44201421(-)$1	233	184	203	15.0177
hhddddqqqqqqqqdddd>	chr1:19479732-19479996(-)$1	264	30	49	14.6444
:eeeeeqqqqqqqqeeeee	chr11:65830806-65831116(+)$1	310	3	22	14.1018
feeeeeqqqqqqqqeeeee	chr20:46265115-46265397(+)$1	282	210	229	14.5481
"""cccqqqqqqqqccc22	chr2:54024559-54024808(+)$1	249	116	135	14.8755
c!!cccqqqqqqqqccc33	chr16:18856649-18856931(-)$1	282	164	183	15.1107
bb[cccqqqqqqqqccc]b	chr2:54891567-54891848(+)$1	281	136	155	13.4872
:a[cccqqqqqqqqccc]a	chr2:48025829-48026081(+)$1	252	77	96	13.7126
#eeeeeqqqqqqqqeeeee	chrX:39930209-39930451(-)$1	242	36	55	15.0805
:eeeeeqqqqqqqqeeeee	chr19:10254341-10254559(-)$1	218	185	204	14.1018
""ddddqqqqqqqqdddd3	chr14:95595715-95595953(-)$1	238	41	60	16.2310
======qqqqqqqq=====	chr8:623269-623527(-)$1	258	224	243	14.0952
""ddddqqqqqqqqdddd4	chr4:13605118-13605385(-)$1	267	171	190	16.1464
e[ddddqqqqqqqqdddd]	chr17:1559844-1560073(-)$1	229	193	212	15.5105
a:ddddqqqqqqqqdddd:	chr14:21861167-21861507(-)$1	340	239	258	13.6070
!!ddddqqqqqqqqdddd3	chr6:7577100-7577318(+)$1	218	133	152	16.2503
$$ddddqqqqqqqqdddd4	chr14:103406545-103406751(-)$1	206	98	117	15.7384
eeddddqqqqqqqqdddd:	chr17:57759529-57759889(+)$1	360	134	153	14.2622
d!!cccqqqqqqqqccc44	chr7:5396795-5397001(-)$1	206	84	103	14.8979
:eeeeeqqqqqqqqeeeee	chr3:37363138-37363432(+)$1	294	159	178	14.1018
##ddddqqqqqqqqdddd4	chr17:57759061-57759300(+)$1	239	136	155	16.0799
b!!cccqqqqqqqqccc33	chr19:10270415-10270699(-)$1	284	101	120	14.9390
[eeeeeqqqqqqqqeeeee	chr1:39782913-39783152(+)$1	239	113	132	15.0177
$$ddddqqqqqqqqdddd3	chr14:31598130-31598355(-)$1	225	46	65	15.8230
d!!cccqqqqqqqqccc44	chr3:184017973-184018333(+)$1	360	140	159	14.8979
[eeeeeqqqqqqqqeeeee	chr21:38536252-38536475(+)$1	223	33	52	15.0177
e!!cccqqqqqqqqccc]e	chr10:70546201-70546433(+)$1	232	6	25	14.6508
e"""bbqqqqqqqqbb333	chr6:56422078-56422415(-)$1	337	213	232	13.3113
eee!!aqqqqqqqqa22ee	chr3:121416019-121416268(-)$1	249	74	93	13.4958
"eeeeeqqqqqqqqeeeee	chr10:70545791-70546076(+)$1	285	23	42	15.1045
ggggggqqqqqqqqggggg	chr2:11348355-11348617(-)$1	262	136	155	13.6425
:eeeeeqqqqqqqqeeeee	chrX:41204561-41204860(+)$1	299	206	225	14.1018
[eeeeeqqqqqqqqeeeee	chr3:167747706-167747925(-)$1	219	53	72	15.0177
[eeeeeqqqqqqqqeeeee	chr1:39789846-39790089(+)$1	243	11	30	15.0177
""ddddqqqqqqqqddddf	chr8:17823443-17823729(+)$1	286	220	239	15.7588
$$ddddqqqqqqqqdddd3	chr14:31572105-31572342(-)$1	237	147	166	15.8230
d[ddddqqqqqqqqdddd]	chr8:95541197-95541494(-)$1	297	214	233	15.4932
##ddddqqqqqqqqdddd3	chr2:54873352-54873579(+)$1	227	24	43	16.1645
iiiiiiqqqqqqqqiiiii	chr14:31604582-31604793(-)$1	211	123	142	13.7427
ddd[bbqqqqqqqqbbddd	chr2:242178933-242179195(-)$1	262	198	217	12.8650
!!ddddqqqqqqqqdddd]	chr16:70588854-70589119(+)$1	265	191	210	16.0936
!!ddddqqqqqqqqdddd2	chr1:186321058-186321296(-)$1	238	149	168	16.0026
ccddddqqqqqqqqdddd3	chr6:7248979-7249228(+)$1	249	138	157	15.4773
a[ddddqqqqqqqqdddda	chr18:9516975-9517237(+)$1	262	222	241	15.5685
ggggggqqqqqqqqggggg	chr17:35445861-35446108(-)$1	247	8	27	13.6425
[eeeeeqqqqqqqqeeeee	chr6:56463182-56463420(-)$1	238	26	45	15.0177
!!ddddqqqqqqqqddddg	chr17:42934342-42934625(-)$1	283	205	224	15.8714
###cccqqqqqqqqccc44	chr17:27003149-27003439(+)$1	290	241	260	15.1365
c!!cccqqqqqqqqccc22	chr11:65826643-65826910(+)$1	267	97	116	14.6552
[eeeeeqqqqqqqqeeeee	chr8:144944742-144945013(-)$1	271	215	234	15.0177
!!ddddqqqqqqqqdddd]	chr16:18826396-18826622(-)$1	226	105	124	16.0936

#otherMatches

#Seq PSSM
GCCACUGGAAAUUAACUGG	chr14:31583113-31583363(-)$1	250	204	223	13.9220
CAGAGCAUUUCCCAGUUUC	chr9:134330431-134330652(+)$1	221	183	202	14.8913
GCCCGGACUCAGCCCCCCA	chr16:3779043-3779294(-)$1	251	19	38	13.3113
GAAGCUAUUGAUACAGCUG	chr5:14387544-14387763(+)$1	219	19	38	16.0936
uuaGGCUUGACAAUGCCUG	chr6:44220702-44220916(+)$1	214	7	26	15.0177
UAUCUUGAAAACAGAAGAA	chr2:39224393-39224667(-)$1	274	117	136	13.6140
CAAUAAUUCUCAAUUUGUU	chr2:109400177-109400452(+)$1	275	5	24	14.1018
GGGAGCCCGAGCUUGCUGU	chr2:242179428-242179637(-)$1	209	3	22	13.8869
UUCCAGAACCACCACCAGA	chr21:34925152-34925452(+)$1	300	127	146	13.1311
CCAGAGGACGAUUACUCAU	chr9:95040410-95040661(-)$1	251	99	118	13.2510
UUUUGUGUAAUGUAGCAGA	chr4:144469093-144469371(+)$1	278	217	236	14.6446
AAGUUGAGCUUGCGCAGCU	chr14:39648427-39648661(+)$1	234	3	22	14.1018
GCCUUUGACCAUGAAAAGG	chr2:48027848-48028114(+)$1	266	16	35	13.6425
GUCGGGACAGAGAACAAGA	chr17:48823798-48824166(+)$1	368	226	245	13.1311
AUUCUUUAAAGUAUAGGAA	chr2:44201188-44201421(-)$1	233	184	203	15.0177
GCCUGCAAUGAGCAGCAGC	chr1:19479732-19479996(-)$1	264	30	49	14.6444
agccuggcacauaauaggu	chr11:65830806-65831116(+)$1	310	3	22	14.1018
GGAGAAUAAUGCACUUCUU	chr20:46265115-46265397(+)$1	282	210	229	14.5481
GUAUGUCAUGGAAAACACA	chr2:54024559-54024808(+)$1	249	116	135	14.8755
GGAUUCCAUUUAAAGAGGU	chr16:18856649-18856931(-)$1	282	164	183	15.1107
GCCCUCCCAGCCCAGAGUG	chr2:54891567-54891848(+)$1	281	136	155	13.4872
AUGUGGAAUUUAAGCCAGA	chr2:48025829-48026081(+)$1	252	77	96	13.7126
UAGCGUGCAAUGAUGCGCU	chrX:39930209-39930451(-)$1	242	36	55	15.0805
UUGUGGCAUAGCACCCACA	chr19:10254341-10254559(-)$1	218	185	204	14.1018
AAUGGGAAAUGUGAUCCAG	chr14:95595715-95595953(-)$1	238	41	60	16.2310
UGUAUUUUUAUGACGGUAU	chr8:623269-623527(-)$1	258	224	243	14.0952
AGACCAAAAAAGAGUGGUG	chr4:13605118-13605385(-)$1	267	171	190	16.1464
UUGGACUUGAUCUUGUCUU	chr17:1559844-1560073(-)$1	229	193	212	15.5105
CAAGGUAACAAACAGCCUC	chr14:21861167-21861507(-)$1	340	239	258	13.6070
GAAGUACAAAAAAUUGCUG	chr6:7577100-7577318(+)$1	218	133	152	16.2503
CCCACCCACGUCACGGUGU	chr14:103406545-103406751(-)$1	206	98	117	15.7384
AUGGCCCGUAAGAAGGCUC	chr17:57759529-57759889(+)$1	360	134	153	14.2622
CCCUCUCCAGCUAAAGAUU	chr7:5396795-5397001(-)$1	206	84	103	14.8979
AGUUGCAGAAAAAAGCAAU	chr3:37363138-37363432(+)$1	294	159	178	14.1018
GUGGUAUGACUUCUUACCU	chr17:57759061-57759300(+)$1	239	136	155	16.0799
ACCCACCCUCCCAAGUGCA	chr19:10270415-10270699(-)$1	284	101	120	14.9390
GGCUCCCAGCUGCAGGAGC	chr1:39782913-39783152(+)$1	239	113	132	15.0177
AUGAACCAAUUGUUGUUCU	chr14:31598130-31598355(-)$1	225	46	65	15.8230
GGCAGAUUCGUUCUUCUAC	chr3:184017973-184018333(+)$1	360	140	159	14.8979
CUGGUUAAAUAAUAAACCA	chr21:38536252-38536475(+)$1	223	33	52	15.0177
UAUUGCUAUCUUAUGCACA	chr10:70546201-70546433(+)$1	232	6	25	14.6508
UUGUGGAAAAAGAACUUAU	chr6:56422078-56422415(-)$1	337	213	232	13.3113
AGUGCCAAGAAAUAGAAAU	chr3:121416019-121416268(-)$1	249	74	93	13.4958
aacagucaugugccacugu	chr10:70545791-70546076(+)$1	285	23	42	15.1045
UGUGACCUCAAACAGUCAC	chr2:11348355-11348617(-)$1	262	136	155	13.6425
CGGUCAUUUCUGCUUGACC	chrX:41204561-41204860(+)$1	299	206	225	14.1018
CAGAGGAGCUAACCCCUCU	chr3:167747706-167747925(-)$1	219	53	72	15.0177
AUUCUAGAAAGUGGUAGAA	chr1:39789846-39790089(+)$1	243	11	30	15.0177
UCAGCUAAAGAAACAGCUU	chr8:17823443-17823729(+)$1	286	220	239	15.7588
AACCAGUCACCAUCCUGGG	chr14:31572105-31572342(-)$1	237	147	166	15.8230
GGACUUUGGGGUUUAAGUA	chr8:95541197-95541494(-)$1	297	214	233	15.4932
UCUUUGAGAGGAGCCAAAA	chr2:54873352-54873579(+)$1	227	24	43	16.1645
AUUUUACUUUAAGCUGGAG	chr14:31604582-31604793(-)$1	211	123	142	13.7427
GGGAGGGGUUCUCACCCCC	chr2:242178933-242179195(-)$1	262	198	217	12.8650
GAACCAGCGACAAGUGGUG	chr16:70588854-70589119(+)$1	265	191	210	16.0936
GGGGCAAAACUUACUGCUA	chr1:186321058-186321296(-)$1	238	149	168	16.0026
CUGCUGGAGCCGCGCAGCA	chr6:7248979-7249228(+)$1	249	138	157	15.4773
GACCAUGAUGUAUGAUGGC	chr18:9516975-9517237(+)$1	262	222	241	15.5685
UGGAGUAAGCAAGCACUCC	chr17:35445861-35446108(-)$1	247	8	27	13.6425
GAUUGAACAGAAACUUAAU	chr6:56463182-56463420(-)$1	238	26	45	15.0177
CUGGGACUGCAGCCUCCUG	chr17:42934342-42934625(-)$1	283	205	224	15.8714
CCACCUCACAGAUCAGGAC	chr17:27003149-27003439(+)$1	290	241	260	15.1365
GCCCCCAAGAAGAAGGGAU	chr11:65826643-65826910(+)$1	267	97	116	14.6552
AGGCGGACAUCAUGCUGCC	chr8:144944742-144945013(-)$1	271	215	234	15.0177
AUCAGCCAUCCUUCGCUGC	chr16:18826396-18826622(-)$1	226	105	124	16.0936

#DB
((((.(........).)))	chr14:31583113-31583363(-)$1	1	204	223	13.9220
..((((........)))).	chr9:134330431-134330652(+)$1	1	183	202	14.8913
(...((........))...	chr16:3779043-3779294(-)$1	1	19	38	13.3113
..((((........)))).	chr5:14387544-14387763(+)$1	1	19	38	16.0936
.(((((........)))))	chr6:44220702-44220916(+)$1	1	7	26	15.0177
..((((........))))(	chr2:39224393-39224667(-)$1	1	117	136	13.6140
.(((((........)))))	chr2:109400177-109400452(+)$1	1	5	24	14.1018
((.(((........))).)	chr2:242179428-242179637(-)$1	1	3	22	13.8869
(((..(........)..))	chr21:34925152-34925452(+)$1	1	127	146	13.1311
((((((........)))..	chr9:95040410-95040661(-)$1	1	99	118	13.2510
...(((........)))))	chr4:144469093-144469371(+)$1	1	217	236	14.6446
.(((((........)))))	chr14:39648427-39648661(+)$1	1	3	22	14.1018
((((((........)))))	chr2:48027848-48028114(+)$1	1	16	35	13.6425
(((..(........)..))	chr17:48823798-48824166(+)$1	1	226	245	13.1311
.(((((........)))))	chr2:44201188-44201421(-)$1	1	184	203	15.0177
((((((........)))).	chr1:19479732-19479996(-)$1	1	30	49	14.6444
.(((((........)))))	chr11:65830806-65831116(+)$1	1	3	22	14.1018
)(((((........)))))	chr20:46265115-46265397(+)$1	1	210	229	14.5481
...(((........)))..	chr2:54024559-54024808(+)$1	1	116	135	14.8755
(..(((........)))..	chr16:18856649-18856931(-)$1	1	164	183	15.1107
((.(((........))).)	chr2:54891567-54891848(+)$1	1	136	155	13.4872
.(.(((........))).)	chr2:48025829-48026081(+)$1	1	77	96	13.7126
.(((((........)))))	chrX:39930209-39930451(-)$1	1	36	55	15.0805
.(((((........)))))	chr19:10254341-10254559(-)$1	1	185	204	14.1018
..((((........)))).	chr14:95595715-95595953(-)$1	1	41	60	16.2310
((((((........)))))	chr8:623269-623527(-)$1	1	224	243	14.0952
..((((........)))).	chr4:13605118-13605385(-)$1	1	171	190	16.1464
(.((((........)))).	chr17:1559844-1560073(-)$1	1	193	212	15.5105
).((((........)))).	chr14:21861167-21861507(-)$1	1	239	258	13.6070
..((((........)))).	chr6:7577100-7577318(+)$1	1	133	152	16.2503
..((((........)))).	chr14:103406545-103406751(-)$1	1	98	117	15.7384
))((((........)))).	chr17:57759529-57759889(+)$1	1	134	153	14.2622
(..(((........)))..	chr7:5396795-5397001(-)$1	1	84	103	14.8979
.(((((........)))))	chr3:37363138-37363432(+)$1	1	159	178	14.1018
..((((........)))).	chr17:57759061-57759300(+)$1	1	136	155	16.0799
(..(((........)))..	chr19:10270415-10270699(-)$1	1	101	120	14.9390
.(((((........)))))	chr1:39782913-39783152(+)$1	1	113	132	15.0177
..((((........)))).	chr14:31598130-31598355(-)$1	1	46	65	15.8230
(..(((........)))..	chr3:184017973-184018333(+)$1	1	140	159	14.8979
.(((((........)))))	chr21:38536252-38536475(+)$1	1	33	52	15.0177
(..(((........))).)	chr10:70546201-70546433(+)$1	1	6	25	14.6508
(...((........))...	chr6:56422078-56422415(-)$1	1	213	232	13.3113
(((..(........)..))	chr3:121416019-121416268(-)$1	1	74	93	13.4958
.(((((........)))))	chr10:70545791-70546076(+)$1	1	23	42	15.1045
((((((........)))))	chr2:11348355-11348617(-)$1	1	136	155	13.6425
.(((((........)))))	chrX:41204561-41204860(+)$1	1	206	225	14.1018
.(((((........)))))	chr3:167747706-167747925(-)$1	1	53	72	15.0177
.(((((........)))))	chr1:39789846-39790089(+)$1	1	11	30	15.0177
..((((........)))))	chr8:17823443-17823729(+)$1	1	220	239	15.7588
..((((........)))).	chr14:31572105-31572342(-)$1	1	147	166	15.8230
(.((((........)))).	chr8:95541197-95541494(-)$1	1	214	233	15.4932
..((((........)))).	chr2:54873352-54873579(+)$1	1	24	43	16.1645
((((((........)))))	chr14:31604582-31604793(-)$1	1	123	142	13.7427
(((.((........)))))	chr2:242178933-242179195(-)$1	1	198	217	12.8650
..((((........)))).	chr16:70588854-70589119(+)$1	1	191	210	16.0936
..((((........)))).	chr1:186321058-186321296(-)$1	1	149	168	16.0026
((((((........)))).	chr6:7248979-7249228(+)$1	1	138	157	15.4773
(.((((........)))))	chr18:9516975-9517237(+)$1	1	222	241	15.5685
((((((........)))))	chr17:35445861-35446108(-)$1	1	8	27	13.6425
.(((((........)))))	chr6:56463182-56463420(-)$1	1	26	45	15.0177
..((((........)))))	chr17:42934342-42934625(-)$1	1	205	224	15.8714
...(((........)))..	chr17:27003149-27003439(+)$1	1	241	260	15.1365
(..(((........)))..	chr11:65826643-65826910(+)$1	1	97	116	14.6552
.(((((........)))))	chr8:144944742-144945013(-)$1	1	215	234	15.0177
..((((........)))).	chr16:18826396-18826622(-)$1	1	105	124	16.0936

#PSSM
[ : 0.12	: : 0.12	d : 0.09	e : 0.09	! : 0.09	c : 0.09	" : 0.09	# : 0.06	g : 0.04	$ : 0.04	b : 0.03	a : 0.03	% : 0.01	h : 0.01	f : 0.01	= : 0.01	i : 0.01	
e : 0.29	! : 0.18	" : 0.10	c : 0.06	d : 0.04	g : 0.04	[ : 0.04	$ : 0.04	# : 0.04	: : 0.03	% : 0.01	h : 0.01	b : 0.01	a : 0.01	= : 0.01	i : 0.01	
d : 0.38	e : 0.27	! : 0.09	" : 0.06	[ : 0.04	c : 0.04	g : 0.04	= : 0.01	i : 0.01	# : 0.01	
d : 0.36	e : 0.26	c : 0.20	! : 0.04	g : 0.04	" : 0.03	= : 0.01	i : 0.01	[ : 0.01	
d : 0.35	e : 0.26	c : 0.20	b : 0.04	! : 0.04	g : 0.04	[ : 0.01	= : 0.01	i : 0.01	
d : 0.35	e : 0.26	c : 0.20	a : 0.06	b : 0.04	g : 0.04	= : 0.01	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.35	e : 0.26	c : 0.20	a : 0.06	b : 0.04	g : 0.04	= : 0.01	i : 0.01	
d : 0.35	e : 0.26	c : 0.20	b : 0.04	2 : 0.04	g : 0.04	] : 0.01	= : 0.01	i : 0.01	
d : 0.38	e : 0.26	c : 0.20	2 : 0.04	g : 0.04	3 : 0.03	= : 0.01	i : 0.01	
d : 0.38	e : 0.27	3 : 0.06	] : 0.06	g : 0.04	4 : 0.04	c : 0.03	2 : 0.03	7 : 0.01	f : 0.01	= : 0.01	i : 0.01	
e : 0.29	3 : 0.15	] : 0.09	4 : 0.09	g : 0.06	d : 0.04	c : 0.04	2 : 0.04	f : 0.03	a : 0.03	: : 0.03	7 : 0.01	> : 0.01	b : 0.01	= : 0.01	i : 0.01	

#score	956.8058607524637
#seq	65
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_transcript_m1_run1.txt

#BEAR
iiiiiiiii[a[cccmmmmcccaiiiiiiiii	chr1:228585094-228585350(-)$1	256	154	186	16.3070
"iiiiiiiii[bboooooobbiiiiiiiii44	chr7:45144384-45144597(-)$1	213	41	73	15.8177
===========[bbnnnnnbb]==========	chr12:6619487-6619698(+)$1	211	82	114	16.5254
"""ggggggg!!ddddlllddddggggggg]c	chr9:139561873-139562119(+)$1	246	105	137	12.1376
dddd[ccc$$$$$bbmmmmbb4444ccc]ddd	chr16:2204945-2205149(-)$1	204	144	176	12.2715
ggggg==========oooooo==========3	chr10:101996748-101996964(-)$1	216	77	109	16.1661
======!!a[a[cccmmmmccc]a]a22====	chr22:19967981-19968223(-)$1	242	5	37	15.3943
[iiiiiiiii"""bbmmmmbb]iiiiiiiii2	chr2:234197339-234197547(+)$1	208	57	89	17.9629
ccc"""dddd[bboooooobb]dddd333ccc	chr21:45562587-45562869(+)$1	282	142	174	11.9091
=========[ccc[bblllbb]ccc=======	chr16:89627220-89627436(+)$1	216	4	36	16.0615
======"""ccccccmmmmccc]ccc333===	chr7:53843823-53844054(+)$1	231	122	154	15.4085
[ccceeeee!!bboooooobb]eeeee4444c	chr16:85658504-85658724(+)$1	220	14	46	11.8239
gggggg[bbbb!!bbmmmmbb22bb]bbgggg	chr1:181423030-181423257(+)$1	227	97	129	12.7916
[iiiiiiiii"""bbmmmmbb]iiiiiiiii2	chr2:234197293-234197505(+)$1	212	103	135	17.9629
[ggggggg!!ddddoooooodddd]ggggggg	chr19:49994382-49994595(+)$1	213	132	164	12.1911
!ffffff[ccc!!bbmmmmbb]ccc]ffffff	chr19:58903754-58904082(+)$1	328	131	163	12.9618
iiiiiiiii"""cccooooooccciiiiiiii	chr10:70514869-70515082(+)$1	213	14	46	15.9091
[iiiiiiiii[cccooooooccciiiiiiiii	chr4:1724985-1725280(+)$1	295	89	121	15.8166
=========="""bbmmmmbb]==========	chr20:37058223-37058446(-)$1	223	85	117	19.0065
&&=============mmmm=============	chr14:20791296-20791513(-)$1	217	39	71	15.9187
cc####ccc"""cccmmmmccc333ccc4444	chr12:54801544-54801836(-)$1	292	188	220	14.5317
b[ggggggg"""bbnnnnnbb4444ggggggg	chr22:39709753-39709970(-)$1	217	171	203	13.9524
Fffffffccc"""bbmmmmbb333ccc]ffff	chr18:690622-690880(-)$1	258	186	218	13.4771
===========[bbnnnnnbb]==========	chr12:6619416-6619629(+)$1	213	153	185	16.5254
[iiiiiiiii"""bbmmmmbb]iiiiiiiii2	chr2:234197305-234197522(+)$1	217	91	123	17.9629
ffccc[ccc"""cccmmmmccc22ccc]ccc]	chr22:23611018-23611265(+)$1	247	146	178	13.9165
####ggggggg!!annnnna22ggggggg444	chr2:97554462-97554718(-)$1	256	98	130	12.7596
ccc[ccc[bb!!ccclllccc22bb]ccc]cc	chr11:122929965-122930174(-)$1	209	76	108	11.6927
ggggg!!ccc!!cccmmmmcccccc333gggg	chr22:23625004-23625259(+)$1	255	159	191	14.7679
!!ccc[dddd"""ccclllccc22ddddccc]	chr17:42398253-42398512(-)$1	259	116	148	11.6694
dddd"""a[ccc[bbmmmmbb]ccca333ddd	chr16:89008718-89008962(-)$1	244	191	223	12.8285
ggggg==========oooooo==========3	chr10:101996830-101997049(-)$1	219	162	194	16.1661
[a[cccccc[ccc[ammmmaccc]ccc]ccca	chr19:798492-798740(+)$1	248	61	93	13.4976
ggggggiiiiiiiiimmmmiiiiiiiii333g	chr5:137896636-137896882(-)$1	246	186	218	15.1778
=========!!bboooooobb]==========	chr19:2045855-2046129(-)$1	274	184	216	17.2677
==========[bb[bblllbb]bb]=======	chr9:139426686-139426948(-)$1	262	158	190	15.5143
iccc[ccc[ccc[bbmmmmbbcccccc]ccc:	chr22:38897199-38897435(-)$1	236	43	75	12.8822
e"""ggggggg!!bbmmmmbb333ggggggge	chr4:1236266-1236498(-)$1	232	48	80	15.4679
fff!!==========mmmm==========fff	chr11:2412230-2412466(+)$1	236	197	229	15.2074
==========####ammmma333=========	chr22:49963744-49963977(-)$1	233	95	127	18.3694
:ggggggg[ccc[bbmmmmbbccc]ggggggg	chr4:53579400-53579608(+)$1	208	84	116	13.7088
!!ggggggg[a[bboooooobba]ggggggg2	chr19:1883505-1883775(-)$1	270	208	240	14.2521
gggggggggggg[aooooooa]ggggggg333	chr7:1498073-1498311(-)$1	238	34	66	14.4687
========bb[cccoooooocccbb4444===	chr19:1433148-1433413(+)$1	265	162	194	14.0945
cccccc[a[ccccccmmmmccc22ccc]a]cc	chr16:88532232-88532504(+)$1	272	111	143	12.8901
========[ccc!!ammmma22ccc]======	chr12:49061153-49061363(-)$1	210	69	101	16.0895
========!!a[ccclllccc]a22=======	chr17:7809347-7809596(+)$1	249	176	208	15.8295
!!cccdddd"""cccmmmmcccdddd]ccc33	chr16:1361830-1362077(+)$1	247	144	176	13.0150
$$$$===========lll===========444	chr3:128216106-128216360(+)$1	254	79	111	15.0377

#otherMatches

#Seq PSSM
CACCCAGAGGCGCCCACUUGGGGCUCUGGGUG	chr1:228585094-228585350(-)$1	256	154	186	16.3070
GCCCUGGGUCACCUACCCUGGGACCUGGGGAU	chr7:45144384-45144597(-)$1	213	41	73	15.8177
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGG	chr12:6619487-6619698(+)$1	211	82	114	16.5254
UUCCGGUUCCGGUGACACUGUCGGGGGCUGCU	chr9:139561873-139562119(+)$1	246	105	137	12.1376
CGGGGAGCUGAGAGUGGAAACAGGUGUUGCCC	chr16:2204945-2205149(-)$1	204	144	176	12.2715
CCUUACAGACAGGCUGACACAGGCUUGUCUGG	chr10:101996748-101996964(-)$1	216	77	109	16.1661
GGUCCUACUGGGAUGGCUUCAUGCGGAGAGGG	chr22:19967981-19968223(-)$1	242	5	37	15.3943
CUCCAUCGCACUUCAGAAGUGCUGCGAUGGGC	chr2:234197339-234197547(+)$1	208	57	89	17.9629
CCCUCUCUGUGAGUGGACUUUGGCAGCCCGGG	chr21:45562587-45562869(+)$1	282	142	174	11.9091
UUCGGCCGCUGCCCGGGCUCUAGGCGCGGCCG	chr16:89627220-89627436(+)$1	216	4	36	16.0615
ggUUGAAAAUAAUAUACAUAUGCUUAAUGUUG	chr7:53843823-53844054(+)$1	231	122	154	15.4085
CGGCCUGUGUCACUUUGCUGUUCGCAGCUUUG	chr16:85658504-85658724(+)$1	220	14	46	11.8239
uucucuugccucaggguucucacagugcagag	chr1:181423030-181423257(+)$1	227	97	129	12.7916
CUCCAUCGCACUUCAGAAGUGCUGCGAUGGGC	chr2:234197293-234197505(+)$1	212	103	135	17.9629
GAGGCUUGGGUGGGUGCUUUUCUAACAGGCCU	chr19:49994382-49994595(+)$1	213	132	164	12.1911
ggagguugaggcaggagaaccauuugaaccuc	chr19:58903754-58904082(+)$1	328	131	163	12.9618
UGUUUCUUUAAAAGAACUCUAUCUGAAGAAAU	chr10:70514869-70515082(+)$1	213	14	46	15.9091
GCUGUCACGUCUGUGUCUGGACAAUGUGGUAG	chr4:1724985-1725280(+)$1	295	89	121	15.8166
GUUUGGAGGGUCCACUCCUGUCUCUUCCAAAC	chr20:37058223-37058446(-)$1	223	85	117	19.0065
CCUCUCACUGCUUGAAGCCUUAGGCAGUGGGA	chr14:20791296-20791513(-)$1	217	39	71	15.9187
CUGUUGGUGAAUUCAGUGGUGAUGACACAGAA	chr12:54801544-54801836(-)$1	292	188	220	14.5317
CUGGAGGGGUCAUCUGCACGACAAUCCCCUCC	chr22:39709753-39709970(-)$1	217	171	203	13.9524
GGCACUUCCAAUUCCGAAGGGCCCUGGAAAGU	chr18:690622-690880(-)$1	258	186	218	13.4771
UCCAGUUGCUGGAGAGAAAUUGUGGUAACUGG	chr12:6619416-6619629(+)$1	213	153	185	16.5254
CUCCAUCGCACUUCAGAAGUGCUGCGAUGGGC	chr2:234197305-234197522(+)$1	217	91	123	17.9629
GUGCUCUGUGGACCCAUGUGGGGAGCAAAGCG	chr22:23611018-23611265(+)$1	247	146	178	13.9165
GUGCUCCAGGGAUUGGGUGAUGCUCUGGGAUA	chr2:97554462-97554718(-)$1	256	98	130	12.7596
guuuccaccaaaagcuuggcuaaugauggcaa	chr11:122929965-122930174(-)$1	209	76	108	11.6927
cucauuaaggaccugccuacagccuguugugg	chr22:23625004-23625259(+)$1	255	159	191	14.7679
AGGGAACCCUGGGGUGAUGCACAAAGGGUCUA	chr17:42398253-42398512(-)$1	259	116	148	11.6694
GCCUCUUGUGUCUCCUAAUGGUGACCCCUGGG	chr16:89008718-89008962(-)$1	244	191	223	12.8285
CCUUACAGACAGGCUGACACAGGCUUGUCUGG	chr10:101996830-101997049(-)$1	219	162	194	16.1661
UGCAGACGGCGAGACGAGGGCUCCCCGCUCUC	chr19:798492-798740(+)$1	248	61	93	13.4976
AAUAGGAUUAUCUUGGACCUAAGAUAGUGACC	chr5:137896636-137896882(-)$1	246	186	218	15.1778
UGAGCUGUCCCUGAGGGUACAUGACAGUUUGG	chr19:2045855-2046129(-)$1	274	184	216	17.2677
AGGCACUGGGCGAGGCUGGGCAUUAUUCAGUG	chr9:139426686-139426948(-)$1	262	158	190	15.5143
UAGGCUGGUAGUAUCCCUAGAACUCCAUCCUU	chr22:38897199-38897435(-)$1	236	43	75	12.8822
CACACAGCACCUGCCAUGAGGAGUGGUGUUGG	chr4:1236266-1236498(-)$1	232	48	80	15.4679
GCUCUGGGAGCAUUUGUUGAGAUGCUUCUGGC	chr11:2412230-2412466(+)$1	236	197	229	15.2074
GUCCCUUGUGGGAGCUUAGGAAAUGCAGGGGA	chr22:49963744-49963977(-)$1	233	95	127	18.3694
CCCAGAGAAGAGACUGGAAAGCUCCUCUUUGG	chr4:53579400-53579608(+)$1	208	84	116	13.7088
CCACCUCGGUGUGCCCCUUCGUCUCCGGGGUC	chr19:1883505-1883775(-)$1	270	208	240	14.2521
GCCCCCAUCUCUGGGAGCAGCAGGAGGUGGCA	chr7:1498073-1498311(-)$1	238	34	66	14.4687
CUUGCUCAGGACCAACGCGGUGGCCUCAGUGG	chr19:1433148-1433413(+)$1	265	162	194	14.0945
GGGGUGGAGGGUGCCAAGGGGCCCGCCGUGCA	chr16:88532232-88532504(+)$1	272	111	143	12.8901
UGGCCAUUUCAUAACUUUGGAAAUGUAAUGGU	chr12:49061153-49061363(-)$1	210	69	101	16.0895
AGGGGAGGGGCGUUGAAGCAAGGAGCCUCUCC	chr17:7809347-7809596(+)$1	249	176	208	15.8295
ACAGCCUUGAAACCGUGGUUGGCGGGCGCUCC	chr16:1361830-1362077(+)$1	247	144	176	13.0150
CCCGCCGGGCGUGCUUGGGGUGUGCUUGGGUC	chr3:128216106-128216360(+)$1	254	79	111	15.0377

#DB
(((((((((.(.(((....)))))))))))))	chr1:228585094-228585350(-)$1	1	154	186	16.3070
.(((((((((.((......)))))))))))..	chr7:45144384-45144597(-)$1	1	41	73	15.8177
(((((((((((.((.....)).))))))))))	chr12:6619487-6619698(+)$1	1	82	114	16.5254
...(((((((..((((...))))))))))).)	chr9:139561873-139562119(+)$1	1	105	137	12.1376
((((.(((.....((....))....))).)))	chr16:2204945-2205149(-)$1	1	144	176	12.2715
(((((((((((((((......)))))))))).	chr10:101996748-101996964(-)$1	1	77	109	16.1661
((((((..(.(.(((....))).).)..))))	chr22:19967981-19968223(-)$1	1	5	37	15.3943
.(((((((((...((....)).))))))))).	chr2:234197339-234197547(+)$1	1	57	89	17.9629
(((...((((.((......)).))))...)))	chr21:45562587-45562869(+)$1	1	142	174	11.9091
(((((((((.(((.((...)).))))))))))	chr16:89627220-89627436(+)$1	1	4	36	16.0615
((((((...((((((....))).)))...)))	chr7:53843823-53844054(+)$1	1	122	154	15.4085
.((((((((..((......)).)))))....)	chr16:85658504-85658724(+)$1	1	14	46	11.8239
((((((.((((..((....))..)).))))))	chr1:181423030-181423257(+)$1	1	97	129	12.7916
.(((((((((...((....)).))))))))).	chr2:234197293-234197505(+)$1	1	103	135	17.9629
.(((((((..((((......)))).)))))))	chr19:49994382-49994595(+)$1	1	132	164	12.1911
.((((((.(((..((....)).))).))))))	chr19:58903754-58904082(+)$1	1	131	163	12.9618
(((((((((...(((......)))))))))))	chr10:70514869-70515082(+)$1	1	14	46	15.9091
.(((((((((.(((......))))))))))))	chr4:1724985-1725280(+)$1	1	89	121	15.8166
((((((((((...((....)).))))))))))	chr20:37058223-37058446(-)$1	1	85	117	19.0065
..(((((((((((((....)))))))))))))	chr14:20791296-20791513(-)$1	1	39	71	15.9187
((....(((...(((....)))...)))....	chr12:54801544-54801836(-)$1	1	188	220	14.5317
(.(((((((...((.....))....)))))))	chr22:39709753-39709970(-)$1	1	171	203	13.9524
)(((((((((...((....))...))).))))	chr18:690622-690880(-)$1	1	186	218	13.4771
(((((((((((.((.....)).))))))))))	chr12:6619416-6619629(+)$1	1	153	185	16.5254
.(((((((((...((....)).))))))))).	chr2:234197305-234197522(+)$1	1	91	123	17.9629
(((((.(((...(((....)))..))).))).	chr22:23611018-23611265(+)$1	1	146	178	13.9165
....(((((((..(.....)..)))))))...	chr2:97554462-97554718(-)$1	1	98	130	12.7596
(((.(((.((..(((...)))..)).))).))	chr11:122929965-122930174(-)$1	1	76	108	11.6927
(((((..(((..(((....))))))...))))	chr22:23625004-23625259(+)$1	1	159	191	14.7679
..(((.((((...(((...)))..))))))).	chr17:42398253-42398512(-)$1	1	116	148	11.6694
((((...(.(((.((....)).))))...)))	chr16:89008718-89008962(-)$1	1	191	223	12.8285
(((((((((((((((......)))))))))).	chr10:101996830-101997049(-)$1	1	162	194	16.1661
.(.((((((.(((.(....)))).))).))))	chr19:798492-798740(+)$1	1	61	93	13.4976
(((((((((((((((....)))))))))...)	chr5:137896636-137896882(-)$1	1	186	218	15.1778
(((((((((..((......)).))))))))))	chr19:2045855-2046129(-)$1	1	184	216	17.2677
((((((((((.((.((...)).)).)))))))	chr9:139426686-139426948(-)$1	1	158	190	15.5143
)(((.(((.(((.((....)))))))).))).	chr22:38897199-38897435(-)$1	1	43	75	12.8822
(...(((((((..((....))...))))))))	chr4:1236266-1236498(-)$1	1	48	80	15.4679
(((..((((((((((....)))))))))))))	chr11:2412230-2412466(+)$1	1	197	229	15.2074
((((((((((....(....)...)))))))))	chr22:49963744-49963977(-)$1	1	95	127	18.3694
.(((((((.(((.((....))))).)))))))	chr4:53579400-53579608(+)$1	1	84	116	13.7088
..(((((((.(.((......))).))))))).	chr19:1883505-1883775(-)$1	1	208	240	14.2521
((((((((((((.(......).)))))))...	chr7:1498073-1498311(-)$1	1	34	66	14.4687
((((((((((.(((......)))))....)))	chr19:1433148-1433413(+)$1	1	162	194	14.0945
)))(((.(.((((((....)))..))).).))	chr16:88532232-88532504(+)$1	1	111	143	12.8901
((((((((.(((..(....)..))).))))))	chr12:49061153-49061363(-)$1	1	69	101	16.0895
((((((((..(.(((...))).)..)))))))	chr17:7809347-7809596(+)$1	1	176	208	15.8295
..(((((((...(((....))))))).)))..	chr16:1361830-1362077(+)$1	1	144	176	13.0150
....(((((((((((...)))))))))))...	chr3:128216106-128216360(+)$1	1	79	111	15.0377

#PSSM
= : 0.24	[ : 0.14	g : 0.12	c : 0.08	! : 0.08	i : 0.06	" : 0.04	d : 0.04	f : 0.04	& : 0.02	b : 0.02	F : 0.02	# : 0.02	e : 0.02	: : 0.02	$ : 0.02	
= : 0.24	g : 0.16	i : 0.14	c : 0.12	f : 0.08	! : 0.06	" : 0.04	d : 0.04	& : 0.02	[ : 0.02	# : 0.02	a : 0.02	$ : 0.02	
= : 0.26	g : 0.20	c : 0.16	i : 0.14	f : 0.06	" : 0.04	d : 0.04	# : 0.04	[ : 0.02	$ : 0.02	
= : 0.26	g : 0.22	i : 0.14	c : 0.14	d : 0.04	" : 0.04	f : 0.04	# : 0.04	[ : 0.02	! : 0.02	$ : 0.02	
= : 0.28	g : 0.26	i : 0.14	c : 0.12	[ : 0.04	" : 0.04	f : 0.04	e : 0.02	# : 0.02	! : 0.02	
= : 0.34	g : 0.20	i : 0.14	c : 0.10	" : 0.04	f : 0.04	[ : 0.04	e : 0.02	# : 0.02	! : 0.02	d : 0.02	
= : 0.30	i : 0.16	g : 0.16	c : 0.12	d : 0.06	! : 0.04	" : 0.04	[ : 0.04	f : 0.04	e : 0.02	
= : 0.30	i : 0.16	g : 0.16	c : 0.14	d : 0.06	[ : 0.04	a : 0.04	! : 0.02	" : 0.02	e : 0.02	b : 0.02	
= : 0.24	i : 0.16	g : 0.12	c : 0.12	[ : 0.10	d : 0.06	b : 0.06	! : 0.04	$ : 0.02	a : 0.02	" : 0.02	e : 0.02	
= : 0.20	c : 0.18	i : 0.12	[ : 0.10	" : 0.10	g : 0.08	! : 0.08	b : 0.06	d : 0.04	$ : 0.02	
" : 0.22	c : 0.18	= : 0.14	[ : 0.10	! : 0.10	a : 0.08	g : 0.06	$ : 0.02	b : 0.02	d : 0.02	i : 0.02	# : 0.02	
" : 0.22	c : 0.20	! : 0.14	[ : 0.12	b : 0.10	= : 0.10	$ : 0.02	d : 0.02	i : 0.02	# : 0.02	g : 0.02	
c : 0.30	b : 0.18	" : 0.12	= : 0.10	! : 0.10	[ : 0.08	d : 0.04	$ : 0.02	i : 0.02	# : 0.02	
b : 0.32	c : 0.28	= : 0.10	o : 0.08	[ : 0.06	d : 0.04	a : 0.04	i : 0.02	# : 0.02	! : 0.02	
b : 0.28	c : 0.24	o : 0.18	= : 0.10	n : 0.08	a : 0.06	d : 0.02	i : 0.02	
m : 0.53	o : 0.24	n : 0.08	l : 0.06	b : 0.04	d : 0.02	c : 0.02	
m : 0.53	o : 0.24	l : 0.14	n : 0.08	
m : 0.53	o : 0.24	l : 0.14	n : 0.08	
m : 0.53	o : 0.24	n : 0.08	l : 0.08	c : 0.04	= : 0.02	
b : 0.42	c : 0.22	o : 0.16	a : 0.08	= : 0.06	d : 0.02	i : 0.02	
b : 0.44	c : 0.28	o : 0.06	= : 0.06	d : 0.04	2 : 0.04	i : 0.02	3 : 0.02	a : 0.02	
c : 0.30	] : 0.30	= : 0.10	2 : 0.08	3 : 0.06	i : 0.04	d : 0.04	4 : 0.04	b : 0.02	
c : 0.22	= : 0.18	i : 0.10	2 : 0.10	d : 0.08	3 : 0.08	a : 0.06	4 : 0.04	] : 0.04	g : 0.04	e : 0.02	b : 0.02	
= : 0.20	c : 0.18	i : 0.14	b : 0.08	2 : 0.08	g : 0.06	d : 0.06	3 : 0.06	4 : 0.04	] : 0.04	a : 0.02	e : 0.02	
c : 0.22	= : 0.20	i : 0.16	g : 0.10	] : 0.08	d : 0.06	b : 0.06	4 : 0.04	e : 0.02	3 : 0.02	2 : 0.02	
= : 0.26	i : 0.16	g : 0.16	c : 0.16	] : 0.08	d : 0.06	a : 0.04	e : 0.02	3 : 0.02	4 : 0.02	
= : 0.28	i : 0.16	g : 0.16	c : 0.16	3 : 0.08	2 : 0.02	e : 0.02	b : 0.02	f : 0.02	d : 0.02	4 : 0.02	] : 0.02	
= : 0.28	i : 0.16	g : 0.16	] : 0.10	c : 0.08	3 : 0.08	4 : 0.04	2 : 0.02	b : 0.02	f : 0.02	d : 0.02	
= : 0.30	g : 0.20	i : 0.14	c : 0.12	3 : 0.08	4 : 0.06	f : 0.04	] : 0.02	a : 0.02	
= : 0.30	g : 0.16	i : 0.14	c : 0.12	4 : 0.08	f : 0.06	d : 0.04	] : 0.04	3 : 0.04	
= : 0.30	c : 0.14	g : 0.14	i : 0.12	4 : 0.10	f : 0.06	3 : 0.06	d : 0.04	] : 0.02	
= : 0.26	g : 0.12	c : 0.10	4 : 0.08	3 : 0.08	2 : 0.08	i : 0.06	f : 0.06	d : 0.04	] : 0.04	a : 0.02	: : 0.02	e : 0.02	

#score	723.3663933649634
#seq	49
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF758EWI_SUPV3L1_CDS_m1_run2.txt

#BEAR
iiiiii!!bbmmmmbb22iiiiiiiiiff	chr2:219267643-219267872(+)$1	229	117	146	9.6277
iii[eeeeeooooooeeeee]iiiiiiii	chr11:721152-721409(+)$1	257	99	128	10.6564
==========nnnnn==========ffff	chrM:14157-14381(-)$1	224	156	185	13.6044
d[bb"""cccooooooccc]bb]dddddd	chr17:80016426-80016720(-)$1	294	195	224	11.3542
++gggggggoooooogggggggiiiiiii	chr16:67984010-67984326(-)$1	316	127	156	10.4942
"dddd"""bbnnnnnbb]dddd22fffff	chr6:134493183-134493437(-)$1	254	125	154	9.6678
dd[bb[cccooooooccc22bb]dddd]e	chrM:14217-14422(-)$1	205	57	86	11.3725
[ccc"""cccooooooccc22ccc]a]hh	chr16:50582551-50582813(+)$1	262	45	74	12.1292
==========nnnnn==========GGGG	chrM:14181-14398(-)$1	217	173	202	11.5419
==========nnnnn==========bb[a	chr3:48451341-48451548(-)$1	207	147	176	13.1023
ccc"""ddddnnnnndddd333ccc]a]b	chr9:139904666-139904966(-)$1	300	5	34	11.5063
c[ccc[ddddnnnnndddd333ccc]ccc	chr17:7010948-7011255(-)$1	307	152	181	11.7538
e[agggggggooooooggggggg]a]eee	chr17:77078044-77078299(+)$1	255	106	135	10.9819
[ggggggg[ccclllcccggggggg333b	chr16:67984709-67984966(-)$1	257	150	179	10.0335
ee####ddddnnnnnddddeeeee]ccc]	chr1:44442124-44442392(+)$1	268	178	207	10.3911
[dddd!!cccnnnnnccc]ddddffffff	chr17:79865281-79865532(-)$1	251	6	35	10.9581
eeeee!!cccnnnnnccc22eeeee====	chr20:2819566-2819827(-)$1	261	103	132	12.1926
dd[bb[cccooooooccc22bb]dddd]e	chrM:14222-14435(-)$1	213	70	99	11.3725
gggggggggglllgggggggiiiiiiiii	chr11:70265862-70266136(+)$1	274	52	81	9.9047
dd[bb[cccooooooccc22bb]dddd]e	chrM:14213-14417(-)$1	204	52	81	11.3725
[==========mmmm==========]ccc	chr9:140347388-140347614(-)$1	226	196	225	11.8208
fff[a!!ccc[aooooooa]ccc22a]ff	chr17:7011759-7012033(-)$1	274	234	263	9.1235
ggggg!!aooooooa22ggggggg22ccc	chr7:100282732-100283073(-)$1	341	107	136	10.3022
gggggggddddmmmmdddd22gggggggd	chrM:3215-3459(+)$1	244	206	235	8.7060
eee####cccooooooccceeeee333cc	chr14:54418396-54418665(-)$1	269	160	189	11.4692
iiiiiii[bbnnnnnbb]iiiiiiiii:J	chr20:61452781-61453044(+)$1	263	13	42	10.4919
""dddd!!bbnnnnnbb22dddd]fffff	chr16:72142227-72142502(+)$1	275	204	233	9.6182
eeeee"""bbnnnnnbb22eeeee22ccc	chrX:153668587-153668866(+)$1	279	153	182	10.2871
a[iiiiiiiiiooooooiiiiiiiii]a:	chr20:60856116-60856361(+)$1	245	162	191	10.7310
d[ccc[a!!aooooooa22a]ccc]dddd	chr16:50664604-50664846(+)$1	242	184	213	10.9661
hhhhhh[cccnnnnnccc333hhhhhhhh	chrM:10250-10469(+)$1	219	141	170	10.7934
======[cccmmmmccc]==========I	chrM:14301-14514(-)$1	213	18	47	10.7750
:iiiiiiiiinnnnniiiiiiiii:gggg	chr17:4686007-4686270(+)$1	263	62	91	10.9632
===="""ddddmmmmdddd]=========	chr2:128180682-128180991(+)$1	309	125	154	11.0155
dd[bb[cccooooooccc22bb]dddd]e	chrM:14235-14449(-)$1	214	84	113	11.3725
=====!!cccnnnnnccc==========]	chr1:11718441-11718755(+)$1	314	272	301	14.7484
"""bb!!cccooooooccc]bb]ccc333	chr14:35872778-35872996(-)$1	218	76	105	12.2664
[a[dddd[bbnnnnnbbdddd]a]bb]gg	chr7:142962001-142962239(+)$1	238	136	165	9.4460
d[ccc[ddddnnnnndddd333ccc]ddd	chr9:135930323-135930613(+)$1	290	229	258	11.2756
======[cccmmmmccc]==========I	chrM:14282-14501(-)$1	219	5	34	10.7750
"""bb"""cccmmmmccc22bb]dddd22	chr1:1289508-1289782(-)$1	274	166	195	9.5024
ddd!!eeeeennnnneeeee22ddddccc	chr16:67983707-67984038(-)$1	331	59	88	8.9179

#otherMatches

#Seq PSSM
UACGUGUUGAAGCGUCCUCACGUGGAUGA	chr2:219267643-219267872(+)$1	229	117	146	9.6277
GGCUCGGUGAGCAGCCGCCGUGUCCCCCA	chr11:721152-721409(+)$1	257	99	128	10.6564
UUGAUUAGUAGUGGUUACUGGUUGAACAU	chrM:14157-14381(-)$1	224	156	185	13.6044
AUGCCUCAGGACGGCCCCUUGCUUCCAGC	chr17:80016426-80016720(-)$1	294	195	224	11.3542
AUGGCCUGGCUGCUCCCAGGCCCUCGCCC	chr16:67984010-67984326(-)$1	316	127	156	10.4942
UGGUGCCUGGUUUACCCCCGCCUUCCAAG	chr6:134493183-134493437(-)$1	254	125	154	9.6678
CUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14217-14422(-)$1	205	57	86	11.3725
ccgccgccgccgccUCGCGAUGUGCCUGC	chr16:50582551-50582813(+)$1	262	45	74	12.1292
UUGAUUAGUAGUGGUUACUGGUUGAACAU	chrM:14181-14398(-)$1	217	173	202	11.5419
GCCUCGGAGGGGCAGCCUUCGGGGCGGGG	chr3:48451341-48451548(-)$1	207	147	176	13.1023
GGUGGGGCCUGCAUGGGGUGGGGCUGUGG	chr9:139904666-139904966(-)$1	300	5	34	11.5063
gguguguguaguguguacgugugcggugu	chr17:7010948-7011255(-)$1	307	152	181	11.7538
UGGUGGCUUUCGUCCAAGGGCCAGCGGCC	chr17:77078044-77078299(+)$1	255	106	135	10.9819
UUGGCCUGUGUACGUUGCCAGGUCACAUG	chr16:67984709-67984966(-)$1	257	150	179	10.0335
UGGCAAUUGUCAUUAGCAACAUGGCUGAG	chr1:44442124-44442392(+)$1	268	178	207	10.3911
UGGCCACGCCGGGAGGGCAGGCCCCUCAG	chr17:79865281-79865532(-)$1	251	6	35	10.9581
AGCUGAGCUUUGAACAGGACCAGCUGGUG	chr20:2819566-2819827(-)$1	261	103	132	12.1926
CUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14222-14435(-)$1	213	70	99	11.3725
UUGGCUUUGAGUAUCAAGGCAAAACGGAG	chr11:70265862-70266136(+)$1	274	52	81	9.9047
CUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14213-14417(-)$1	204	52	81	11.3725
GCCUUCUCCAGCUGCCUGGGGGAGGGUGU	chr9:140347388-140347614(-)$1	226	196	225	11.8208
CAGGCAAUCAGCACCCACGGUGAGGGGCU	chr17:7011759-7012033(-)$1	274	234	263	9.1235
GUAGGAAGGGAGGAUGGCCUACCUCCCGG	chr7:100282732-100283073(-)$1	341	107	136	10.3022
GUUGUAGGCCCCUACGGGCUACUACAACC	chrM:3215-3459(+)$1	244	206	235	8.7060
CCCUGGGGAAGAAGAGUUCGGGUUACAUC	chr14:54418396-54418665(-)$1	269	160	189	11.4692
GGGAGGGGUGAGGCGCAGCCCUUCUUGUG	chr20:61452781-61453044(+)$1	263	13	42	10.4919
UCGUGUGGCACUGACUGGGACAUCGUCAG	chr16:72142227-72142502(+)$1	275	204	233	9.6182
CUUGAGACCGUCAACCGCAUCAAGUUGUA	chrX:153668587-153668866(+)$1	279	153	182	10.2871
CGGGGAGCGUGAGCAUCCGUGCUCCUGGU	chr20:60856116-60856361(+)$1	245	162	191	10.7310
GAGCUGGGAGAAGAAGCAGCGAGCCCCGC	chr16:50664604-50664846(+)$1	242	184	213	10.9661
AGACUGAGCCGAAUUGGUAUAUAGUUUAA	chrM:10250-10469(+)$1	219	141	170	10.7934
UAGGGGGAAUGAUGGUUGUCUUUGGAUAU	chrM:14301-14514(-)$1	213	18	47	10.7750
UCCCCUGGGACGUAUUCUUGGGGGCGGGG	chr17:4686007-4686270(+)$1	263	62	91	10.9632
GCGGCACCAGCACCAGCUGCCCGCGCCCU	chr2:128180682-128180991(+)$1	309	125	154	11.0155
CUGUGGGUGAAAGAGUAUGAUGGGGUGGU	chrM:14235-14449(-)$1	214	84	113	11.3725
GGGGCAUGCCAAUCAGGCGCCCCACCCCC	chr1:11718441-11718755(+)$1	314	272	301	14.7484
CAACUUCCAGAACAACCUGCAGCAGGUGC	chr14:35872778-35872996(-)$1	218	76	105	12.2664
AUGCUGGAGAAAGCGUCCCGGGAGCUGUG	chr7:142962001-142962239(+)$1	238	136	165	9.4460
AGAGCAGGCCAUGUGGGCUGCAGCUGUGG	chr9:135930323-135930613(+)$1	290	229	258	11.2756
UAGGGGGAAUGAUGGUUGUCUUUGGAUAU	chrM:14282-14501(-)$1	219	5	34	10.7750
CCAGGCUACGAAUACUCGGACCAGAAGUC	chr1:1289508-1289782(-)$1	274	166	195	9.5024
GUGGAAUCAGGGAGACUGGUGACACCCAU	chr16:67983707-67984038(-)$1	331	59	88	8.9179

#DB
((((((..((....))..)))))))))((	chr2:219267643-219267872(+)$1	1	117	146	9.6277
(((.(((((......))))).))))))))	chr11:721152-721409(+)$1	1	99	128	10.6564
((((((((((.....))))))))))((((	chrM:14157-14381(-)$1	1	156	185	13.6044
(.((...(((......))).)).))))))	chr17:80016426-80016720(-)$1	1	195	224	11.3542
..(((((((......))))))))))))))	chr16:67984010-67984326(-)$1	1	127	156	10.4942
.((((...((.....)).))))..)))))	chr6:134493183-134493437(-)$1	1	125	154	9.6678
((.((.(((......)))..)).)))).)	chrM:14217-14422(-)$1	1	57	86	11.3725
.(((...(((......)))..))).).))	chr16:50582551-50582813(+)$1	1	45	74	12.1292
((((((((((.....))))))))))))))	chrM:14181-14398(-)$1	1	173	202	11.5419
((((((((((.....))))))))))((.(	chr3:48451341-48451548(-)$1	1	147	176	13.1023
(((...((((.....))))...))).).)	chr9:139904666-139904966(-)$1	1	5	34	11.5063
(.(((.((((.....))))...))).)))	chr17:7010948-7011255(-)$1	1	152	181	11.7538
(.((((((((......))))))).).)))	chr17:77078044-77078299(+)$1	1	106	135	10.9819
.(((((((.(((...))))))))))...)	chr16:67984709-67984966(-)$1	1	150	179	10.0335
((....((((.....))))))))).))).	chr1:44442124-44442392(+)$1	1	178	207	10.3911
.((((..(((.....))).))))))))))	chr17:79865281-79865532(-)$1	1	6	35	10.9581
(((((..(((.....)))..)))))((((	chr20:2819566-2819827(-)$1	1	103	132	12.1926
((.((.(((......)))..)).)))).)	chrM:14222-14435(-)$1	1	70	99	11.3725
)))(((((((...)))))))(((((((((	chr11:70265862-70266136(+)$1	1	52	81	9.9047
((.((.(((......)))..)).)))).)	chrM:14213-14417(-)$1	1	52	81	11.3725
.((((((((((....)))))))))).)))	chr9:140347388-140347614(-)$1	1	196	225	11.8208
(((.(..(((.(......).)))..).))	chr17:7011759-7012033(-)$1	1	234	263	9.1235
(((((..(......)..)))))))..)))	chr7:100282732-100283073(-)$1	1	107	136	10.3022
(((((((((((....))))..))))))))	chrM:3215-3459(+)$1	1	206	235	8.7060
(((....(((......))))))))...))	chr14:54418396-54418665(-)$1	1	160	189	11.4692
(((((((.((.....)).))))))))).(	chr20:61452781-61453044(+)$1	1	13	42	10.4919
..((((..((.....))..)))).)))))	chr16:72142227-72142502(+)$1	1	204	233	9.6182
(((((...((.....))..)))))..)))	chrX:153668587-153668866(+)$1	1	153	182	10.2871
(.(((((((((......))))))))).).	chr20:60856116-60856361(+)$1	1	162	191	10.7310
(.(((.(..(......)..).))).))))	chr16:50664604-50664846(+)$1	1	184	213	10.9661
((((((.(((.....)))...))))))))	chrM:10250-10469(+)$1	1	141	170	10.7934
((((((.(((....))).))))))))))(	chrM:14301-14514(-)$1	1	18	47	10.7750
.(((((((((.....))))))))).((((	chr17:4686007-4686270(+)$1	1	62	91	10.9632
((((...((((....)))).)))))))))	chr2:128180682-128180991(+)$1	1	125	154	11.0155
((.((.(((......)))..)).)))).)	chrM:14235-14449(-)$1	1	84	113	11.3725
(((((..(((.....))))))))))))).	chr1:11718441-11718755(+)$1	1	272	301	14.7484
...((..(((......))).)).)))...	chr14:35872778-35872996(-)$1	1	76	105	12.2664
.(.((((.((.....)))))).).)).))	chr7:142962001-142962239(+)$1	1	136	165	9.4460
(.(((.((((.....))))...))).)))	chr9:135930323-135930613(+)$1	1	229	258	11.2756
((((((.(((....))).))))))))))(	chrM:14282-14501(-)$1	1	5	34	10.7750
...((...(((....)))..)).))))..	chr1:1289508-1289782(-)$1	1	166	195	9.5024
(((..(((((.....)))))..)))))))	chr16:67983707-67984038(-)$1	1	59	88	8.9179

#PSSM
d : 0.19	= : 0.16	[ : 0.11	e : 0.11	" : 0.09	i : 0.07	g : 0.07	c : 0.04	+ : 0.02	f : 0.02	a : 0.02	h : 0.02	: : 0.02	
= : 0.19	d : 0.16	[ : 0.14	i : 0.09	g : 0.09	e : 0.09	" : 0.07	c : 0.04	+ : 0.02	f : 0.02	h : 0.02	a : 0.02	
= : 0.19	i : 0.11	g : 0.11	[ : 0.11	c : 0.11	d : 0.09	e : 0.07	" : 0.04	b : 0.02	a : 0.02	# : 0.02	f : 0.02	h : 0.02	
= : 0.19	b : 0.16	g : 0.14	i : 0.09	d : 0.09	c : 0.09	[ : 0.04	# : 0.04	e : 0.04	" : 0.02	h : 0.02	! : 0.02	
= : 0.16	g : 0.14	b : 0.14	i : 0.09	" : 0.09	d : 0.09	e : 0.07	c : 0.07	# : 0.04	a : 0.02	h : 0.02	! : 0.02	
" : 0.16	[ : 0.16	= : 0.14	! : 0.14	g : 0.11	i : 0.09	e : 0.04	# : 0.04	d : 0.04	h : 0.02	
! : 0.19	" : 0.14	g : 0.11	d : 0.11	= : 0.09	c : 0.09	i : 0.07	[ : 0.07	e : 0.04	# : 0.02	a : 0.02	
c : 0.35	d : 0.14	= : 0.09	g : 0.09	! : 0.07	" : 0.07	e : 0.04	[ : 0.04	i : 0.04	a : 0.02	
c : 0.38	b : 0.14	d : 0.14	= : 0.09	g : 0.07	e : 0.04	i : 0.04	[ : 0.02	o : 0.02	! : 0.02	
c : 0.30	o : 0.16	b : 0.14	d : 0.14	= : 0.09	g : 0.04	i : 0.04	a : 0.02	e : 0.02	
n : 0.42	o : 0.30	m : 0.07	c : 0.04	d : 0.04	l : 0.02	= : 0.02	[ : 0.02	i : 0.02	
n : 0.42	o : 0.33	m : 0.16	c : 0.02	l : 0.02	a : 0.02	
n : 0.42	o : 0.35	m : 0.16	l : 0.04	
n : 0.42	o : 0.35	m : 0.16	l : 0.02	g : 0.02	
n : 0.42	o : 0.33	m : 0.09	c : 0.04	b : 0.02	l : 0.02	g : 0.02	a : 0.02	
c : 0.28	o : 0.19	b : 0.14	d : 0.14	= : 0.09	e : 0.04	g : 0.04	2 : 0.02	i : 0.02	
c : 0.38	d : 0.14	b : 0.11	= : 0.09	g : 0.07	2 : 0.04	e : 0.04	o : 0.04	a : 0.02	i : 0.02	
c : 0.33	d : 0.16	2 : 0.09	= : 0.09	g : 0.09	] : 0.09	e : 0.04	i : 0.04	o : 0.02	
2 : 0.21	d : 0.19	= : 0.16	g : 0.11	i : 0.09	c : 0.09	e : 0.04	] : 0.02	a : 0.02	3 : 0.02	
2 : 0.19	= : 0.16	e : 0.11	g : 0.11	i : 0.09	] : 0.09	d : 0.09	3 : 0.09	a : 0.02	
= : 0.19	b : 0.16	i : 0.11	g : 0.09	d : 0.09	3 : 0.09	e : 0.09	2 : 0.07	] : 0.04	c : 0.02	
= : 0.19	b : 0.16	i : 0.14	g : 0.11	e : 0.09	d : 0.07	c : 0.07	3 : 0.07	h : 0.02	] : 0.02	2 : 0.02	
= : 0.19	i : 0.16	] : 0.16	c : 0.14	g : 0.09	e : 0.09	d : 0.07	2 : 0.02	h : 0.02	a : 0.02	
= : 0.19	i : 0.16	d : 0.16	c : 0.14	e : 0.09	] : 0.07	g : 0.07	2 : 0.04	f : 0.02	h : 0.02	
= : 0.19	d : 0.16	i : 0.14	c : 0.09	f : 0.07	] : 0.07	2 : 0.07	g : 0.04	a : 0.02	e : 0.02	3 : 0.02	h : 0.02	: : 0.02	b : 0.02	
d : 0.19	i : 0.14	] : 0.11	= : 0.11	f : 0.09	a : 0.04	b : 0.04	3 : 0.04	c : 0.04	2 : 0.04	g : 0.04	G : 0.02	h : 0.02	
d : 0.19	c : 0.14	i : 0.11	= : 0.11	f : 0.09	] : 0.09	3 : 0.07	g : 0.04	G : 0.02	b : 0.02	a : 0.02	e : 0.02	h : 0.02	
c : 0.16	f : 0.14	] : 0.11	= : 0.11	i : 0.07	d : 0.07	g : 0.07	h : 0.04	3 : 0.04	G : 0.02	[ : 0.02	e : 0.02	: : 0.02	a : 0.02	2 : 0.02	
f : 0.14	c : 0.14	e : 0.11	d : 0.09	i : 0.07	h : 0.04	b : 0.04	] : 0.04	= : 0.04	I : 0.04	g : 0.04	G : 0.02	a : 0.02	J : 0.02	: : 0.02	3 : 0.02	2 : 0.02	

#score	459.38701215455956
#seq	42
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_transcript_m1_run2.txt

#BEAR
gggggg"""ccc[dddd[bblllbbddddccc22gggggg	chr16:1368971-1369238(+)$1	267	64	104	14.8458
dddggggggg[a[ccc!!bbmmmmbb22cccaggggggg:	chr17:80189632-80189894(+)$1	262	176	216	10.8243
fffffffffff"""eeeeeooooooeeeee333ffffff9	chr4:1225619-1225872(-)$1	253	162	202	11.1420
iiiiii[bbccc"""ddddnnnnnddddccc]bbiiiiii	chr22:50727480-50727759(-)$1	279	102	142	14.0800
ggg####dddd!!a[eeeeeooooooeeeeea]ddddggg	chr9:138378804-138379087(+)$1	283	169	209	12.1965
[ffffff"""dddd!!ddddllldddddddd22ffffff]	chr7:1157282-1157568(-)$1	286	107	147	12.6959
]bb:ggggggg####ddddoooooodddd333ggggggg:	chr19:1167344-1167631(-)$1	287	48	88	13.0506
hhhhhccc[ccc[ccc!!ccclllccc]ccc]cccccc]h	chr16:69355167-69355445(-)$1	278	140	180	12.8978
:===========[ddddoooooodddd===========dd	chr7:73017673-73017928(-)$1	255	71	111	13.7462
eeeeebbdddd!!eeeeeooooooeeeee4444dddd]bb	chr16:89467310-89467583(-)$1	273	226	266	11.1497
e!!ccc!!ffffff"""ccclllccc]ffffff22cccee	chr1:3487043-3487288(-)$1	245	200	240	11.2323
cc[ccc"""ccc[eeeeerrrrrrrrreeeee]cccccc]	chr7:290238-290569(+)$1	331	121	161	11.6347
fffffccc!!a!!cccooooooccc22a]ccc]ffffff]	chr16:596216-596476(+)$1	260	143	183	11.3995
eeee!!ccc[eeeee[ddddnnnnndddd4444eeeeecc	chr6:138754338-138754594(-)$1	256	57	97	11.0610
dd[ccc"""ccc####ddddmmmmdddd4444ccc22ccc	chr11:70256161-70256460(+)$1	299	166	206	14.6558
hhhhhh"""dddd!!ddddoooooodddd22dddd333hh	chr22:50277368-50277649(+)$1	281	39	79	13.8069
cc[a[bb$$$$$a[ccc[ammmma]ccc]a333bb]a]cc	chr7:64499119-64499391(+)$1	272	124	164	12.1527
gggggg"""==========!!cccmmmmccc22=======	chr22:45125780-45126046(+)$1	266	137	177	10.4652
c!!ccc!!ccca!!ddddammmma]dddd22a]cccccc4	chr4:1240040-1240264(-)$1	224	84	124	13.9676
ee"""============[bbmmmmbb]============3	chr2:236543477-236543736(+)$1	259	59	99	12.9456
ccc:bb[ffffff!!ddddoooooodddd4444ffffff]	chr7:205452-205713(+)$1	261	202	242	12.2632
GGGbb!!ccc[ccc!!ddddllldddd333ccc]ccc22b	chr4:1797270-1797511(+)$1	241	32	72	12.1990
hhh!!ccc[eeeee[ddddnnnnndddd]eeeeeccchhh	chr12:12714602-12714890(-)$1	288	112	152	11.5282
ggg[eeeee!!dddd[a!!allla22a333dddd333eee	chr7:158200318-158200588(-)$1	270	158	198	11.7135
hhhhhggggggg[ccccccooooooccc]ccc]ggggggg	chr21:47563001-47563257(-)$1	256	63	103	14.0442
b[ccc####ccc[eeeeeooooooeeeee22ccc22ccc]	chr7:157650091-157650392(-)$1	301	33	73	13.4101
iiiiiii!!bba"""bboooooobb333a]bb]iiiiiii	chr18:30351506-30351747(+)$1	241	37	77	13.9057
======$$$$$a[bb[a[cccooooooccca]bb]a====	chr14:19888033-19888292(-)$1	259	17	57	11.7170
eeeee==========ddddmmmmdddd333==========	chr17:79963065-79963331(+)$1	266	125	165	14.7715
gggggg[a[dddd[ccc[bbmmmmbb]cccdddd]a]ggg	chr22:45724198-45724429(+)$1	231	92	132	11.8645
fffff####a[ccc"""ccc"""bb[=============!	chr21:9911444-9911692(-)$1	248	61	101	10.8581
hhhhhhh[ccc"""ddddnnnnndddd333ccchhhhhhh	chr17:79860493-79860770(-)$1	277	30	70	12.3176
iiiiiii!!ccc####ddddllldddd4444ccc4444ii	chr2:241562080-241562419(+)$1	339	254	294	16.5142
feeeee[ccc[a[dddd[bbmmmmbbdddd]a]ccc22ee	chr7:157866481-157866749(-)$1	268	80	120	11.0637
iiiiiiii[ccc[ddddoooooodddd22ccc]iiiiiii	chr12:104697337-104697643(+)$1	306	137	177	15.7599
a[dddd[a[ccc!!acccmmmmccc]a22ccc]a]dddd]	chr13:113380464-113380820(+)$1	356	101	141	11.7539
::=========="""cccnnnnnccc333==========:	chr2:101492989-101493257(+)$1	268	4	44	11.8242
iiiiiiii[ccc!!ddddooooooddddccc]iiiiiiii	chr1:245026472-245026751(-)$1	279	127	167	16.4842
bb[iiiiiiiiibb!!ddddllldddd22bb]iiiiiiii	chr16:89462557-89462921(-)$1	364	89	129	13.9497
ddd[dddd!!a[bb[cccooooooccc]bb]a22dddd]d	chr6:31600428-31600676(+)$1	248	87	127	11.2384
ffbb[bb!!ccceeeeeooooooeeeee]ccc22bb]bb]	chr2:3454206-3454471(+)$1	265	202	242	11.3119
gggggg[a[dddd[ccc[bbmmmmbb]cccdddd]a]ggg	chr22:45724171-45724398(+)$1	227	119	159	11.8645
hh[a[bb"""ccc!!bb[ddddllldddd]bb22ccc333	chr20:62312797-62313082(+)$1	285	180	220	11.3817
ff!!dddd[ccc!!ddddnnnnndddd22cccdddd333f	chr4:847097-847371(-)$1	274	19	59	12.4276
!iiiiiiiii$$$$$ddddmmmmdddd22iiiiiiiii]e	chr14:105715317-105715582(-)$1	265	131	171	13.7982
iiiiii[a[eeeee[eeeeellleeeeeeeeee22a]iii	chr2:138749738-138750013(+)$1	275	188	228	12.3413
hhhhhhhh[ccc"""eeeeellleeeee]ccchhhhhhhh	chr18:30350889-30351153(+)$1	264	181	221	12.0727
[bb[bb[a!!ccc!!eeeeeooooooeeeee22ccc]a]b	chr17:80534052-80534323(+)$1	271	49	89	12.6265
c[ccc[a[bb!!a[a[ddddmmmmdddd]a]a22bb]a]c	chr17:80848057-80848329(+)$1	272	76	116	12.8736
=====!!ccc[dddd"""bbnnnnnbb333ddddccc]==	chr8:124414503-124414822(-)$1	319	125	165	11.4032
!dddd[bb[ffffffddddoooooodddd4444ffffffb	chr8:594027-594303(-)$1	276	146	186	11.9818
==[eeeee!!bb[a[ddddllldddd22a]bb]eeeee==	chr20:17661743-17661986(-)$1	243	65	105	11.8457
f[a!!ccc!!bb"""cccmmmmcccbb22ccc22a]ffff	chr14:23450758-23451026(-)$1	268	16	56	11.6445
eeee!!gggggggbb[ddddmmmmdddd]bb]ggggggge	chr1:6516790-6517030(+)$1	240	67	107	11.8602
b[ggggggg####ccccccooooooccc]ccc22gggggg	chr7:2672539-2672799(+)$1	260	14	54	14.4379
ffff####dddd####a[ccclllcccadddd333fffff	chr16:585125-585386(+)$1	261	85	125	12.0363
""dddd"""a[bb!!ddddmmmmdddd22bb]a333dddd	chr19:57325425-57325737(-)$1	312	196	236	12.4071
ccc!!ccc[ddddccc[ccclllccc]ccc22ddddccc2	chr13:114186144-114186355(+)$1	211	1	41	11.8087
eeeee####cccccc!!bbmmmmbb22ccc]ccc22eeee	chr3:196695284-196695604(-)$1	320	247	287	10.4647
:bb[cccddddccc!!ddddllldddd]ccc22dddd]cc	chr7:947742-947980(-)$1	238	97	137	11.6820
d[dddd"""===========lll===========666666	chr8:144669905-144670173(-)$1	268	199	239	11.0841

#otherMatches

#Seq PSSM
CAGAAGAGCCCUGUAAGACGUAUCGCUUGAGGAACUUCUG	chr16:1368971-1369238(+)$1	267	64	104	14.8458
CUCGGCCCCGACACCUUUGCAGGCGCCUGGGGCGGGGCUG	chr17:80189632-80189894(+)$1	262	176	216	10.8243
GUGCAGCAGGCACCGCCGGUAACCCCUGGCCUGGCCUGCG	chr4:1225619-1225872(-)$1	253	162	202	11.1420
GGGCCUGUCCCGAGUCUUGGAGCGCGAGUGGAGAGGGCCC	chr22:50727480-50727759(-)$1	279	102	142	14.0800
GGCCAGAGGUGCUGUGCAGGAAGGAGCCUGCCCCACCGCC	chr9:138378804-138379087(+)$1	283	169	209	12.1965
GGUGAUGGAAGCUGGUCGGUAGAGCCGUAGCGAUGUCAUG	chr7:1157282-1157568(-)$1	286	107	147	12.6959
GGUCAGAAGCCUAAGAGGGACCUUGCCCUGCUGGCUUUUA	chr19:1167344-1167631(-)$1	287	48	88	13.0506
CGGCUCUCCAGGAGGCCUCAGAGACUGUGUCACCUGAGCA	chr16:69355167-69355445(-)$1	278	140	180	12.8978
ACCCCCACCCCUGUUCCAGUCCCGGGAGGGGGUGGGGGCU	chr7:73017673-73017928(-)$1	255	71	111	13.7462
UCUGUGAACCCGAGCAGGGUGGAGCCUGUGAGAGGGUGUC	chr16:89467310-89467583(-)$1	273	226	266	11.1497
CUCAGGUCCCAGGCUUUGAGGAGCUCUGCCUGGUUUCUGG	chr1:3487043-3487288(-)$1	245	200	240	11.2323
UGGCCCACUGGUGCCUGGCCCUACACACCAGGAAUCGGGG	chr7:290238-290569(+)$1	331	121	161	11.6347
GGGGAGGCCCCUUGCUCAGAUCAGCCUGUGCCUUCCCCAG	chr16:596216-596476(+)$1	260	143	183	11.3995
CCUUGACAGUGAUGCUGGCUUCCAUAGUCUUCCGCGUUCU	chr6:138754338-138754594(-)$1	256	57	97	11.0610
AGGCAGCCUUGUGAUAGGACAGAAGUCCAGAAGCAUCCUG	chr11:70256161-70256460(+)$1	299	166	206	14.6558
CUCCUGAUAGUUUGGAAAGAAUGGACUUUAAAAGCGAGCA	chr22:50277368-50277649(+)$1	281	39	79	13.8069
ccgggcugggcaggAGCGCGAGGGGGCUGCGGAGGGUGGG	chr7:64499119-64499391(+)$1	272	124	164	12.1527
GGCUGGCCACUGGGCUGGGAGCCAAAGAUGGGACCCAGUC	chr22:45125780-45126046(+)$1	266	137	177	10.4652
CAGGCCUGGCCCAGGGCCCAGGGGUGGCCAGGAGGUGGUA	chr4:1240040-1240264(-)$1	224	84	124	13.9676
GGAUGUGUUUGUUCCAUGUACGAGUGGAUGGAGCAGACAG	chr2:236543477-236543736(+)$1	259	59	99	12.9456
GGCUGCGCCGGGCUUGGGAUCCAUCUCCCUCCUGCCUGGG	chr7:205452-205713(+)$1	261	202	242	12.2632
GGCGCUUGCCCGGGAACAUAAAUUAUGGAGCCUUGGCUCG	chr4:1797270-1797511(+)$1	241	32	72	12.1990
GGCCGGGCGCGGGGUCGCAGUGGGUGCGCUCCCGGCCGCU	chr12:12714602-12714890(-)$1	288	112	152	11.5282
CUUCUGUCUCAAUccaggacccaggacgcaggaugcagga	chr7:158200318-158200588(-)$1	270	158	198	11.7135
AACAUGUGCCCCAGCCUCUGGAGCAGGGCGGUGGGGGCGC	chr21:47563001-47563257(-)$1	256	63	103	14.0442
CAGGGCACGGACCUCAGAGCUGGAUCUGGUUGUCAUCCCA	chr7:157650091-157650392(-)$1	301	33	73	13.4101
UCCCCUUCCAGCGAGGGGCGGCACCGAGGACUCAGGGGGA	chr18:30351506-30351747(+)$1	241	37	77	13.9057
UGCGCUGGACACGCCGGUGGCGCCUUUGCCUGGGGGAGCG	chr14:19888033-19888292(-)$1	259	17	57	11.7170
GGCCUGCGGGGCAGUGGUCCCCCGGCUCUUGCUGCCCUGC	chr17:79963065-79963331(+)$1	266	125	165	14.7715
GGCAGCCUGCAGGUGUGGGGAGUUCUGUGCCCUGGGAGCU	chr22:45724198-45724429(+)$1	231	92	132	11.8645
GGUGGAAACCCAGGUCUGGGCCAGCACUGUGGGUGUGGAC	chr21:9911444-9911692(-)$1	248	61	101	10.8581
CGGGGUGAGCGGAGUAGGGGAGACCUGGGGCGCCAUCCCG	chr17:79860493-79860770(-)$1	277	30	70	12.3176
GCCAGGUGGUCUGAAGCUGCCCAGCAGGGAGAGAACAGGC	chr2:241562080-241562419(+)$1	339	254	294	16.5142
GAGAUGAGCUGUGCUGGAGGGGAGUCCCAGGGGAGCCGCG	chr7:157866481-157866749(-)$1	268	80	120	11.0637
cgugcugggggcgggucgcgccgggccgggccgCUAGUGC	chr12:104697337-104697643(+)$1	306	137	177	15.7599
CGUGCAGGGAGAGGGGCCAGAGGGCACAGUCUGUGUGCAG	chr13:113380464-113380820(+)$1	356	101	141	11.7539
gcuuuccaaauaauucugcugcccagcuguauuuggagaC	chr2:101492989-101493257(+)$1	268	4	44	11.8242
ccgcgggcgggcggcgggagggagcccggucggcccgcgg	chr1:245026472-245026751(-)$1	279	127	167	16.4842
gcagcaggggagucucagggcuucccuuuggucucucuug	chr16:89462557-89462921(-)$1	364	89	129	13.9497
GGAGGUGGAGGUGGAGCCGUACCAGGUAUUUCAGCCAUGU	chr6:31600428-31600676(+)$1	248	87	127	11.2384
CUCCAAGAAGACUCUUUUACUUUGAAGAGGUCCCCUGGGA	chr2:3454206-3454471(+)$1	265	202	242	11.3119
GGCAGCCUGCAGGUGUGGGGAGUUCUGUGCCCUGGGAGCU	chr22:45724171-45724398(+)$1	227	119	159	11.8645
GCAGAUCCCGGAACAAGCAGGCACUGCCUUCUCCUUCACA	chr20:62312797-62313082(+)$1	285	180	220	11.3817
CCGGGGGGACGAGCCGCGUGUCUCGCGCAUUGCCCCGGGG	chr4:847097-847371(-)$1	274	19	59	12.4276
ggcgcgggggccgcggggcACGGGCUCACCUCUCGCGCAG	chr14:105715317-105715582(-)$1	265	131	171	13.7982
ggcugugcuuuuccucuguuggagacagggaggcuggacg	chr2:138749738-138750013(+)$1	275	188	228	12.3413
GGUCAACUUGUGCCCGAAGCUUUGCUUUUCGCAGUUGGCC	chr18:30350889-30351153(+)$1	264	181	221	12.0727
GGCGGCGGGUUCGUCCACACCAGCGUGUGUGCUCGGGUGG	chr17:80534052-80534323(+)$1	271	49	89	12.6265
UGGGCGUGUGGUUGGGUCUUGCAGGAGAGUGGGACAGAGG	chr17:80848057-80848329(+)$1	272	76	116	12.8736
GCAGGGAAGUGCCCUACAGGAGAAGCCAGGAGGGGCUGCC	chr8:124414503-124414822(-)$1	319	125	165	11.4032
gggccaggaggccacacagugaucccuguagcaguggccc	chr8:594027-594303(-)$1	276	146	186	11.9818
CGGCUGGGCUGCGCGGAGCCUGGCUCGAGGGCUcccggcg	chr20:17661743-17661986(-)$1	243	65	105	11.8457
CGGCCCUGCAGCAAUCGCACCAGCGGCAUCAGCAUGGGCU	chr14:23450758-23451026(-)$1	268	16	56	11.6445
AGCCUGAGUCUCCCUGAGCCAAGAGGCUGGGUGGGGGCUG	chr1:6516790-6517030(+)$1	240	67	107	11.8602
CAGGCUGCCUGUAGCCCCCGGGGGAGGGAGGCCCGGCGGC	chr7:2672539-2672799(+)$1	260	14	54	14.4379
UACCGAGAGGCACCUCGAGACCCUGUCCUGCCACGGGUGG	chr16:585125-585386(+)$1	261	85	125	12.0363
AGGGCCAGAUGGAGAGGCUGCAGAGCCCAUUGGAGAGGCU	chr19:57325425-57325737(-)$1	312	196	236	12.4071
GAGCCCUCAUCACUGUGCAUUUAAUGGACACUGUGGGAGU	chr13:114186144-114186355(+)$1	211	1	41	11.8087
CACUGACCCGCCCCGGACCUAGGGGGACGGAGGCAGCGGU	chr3:196695284-196695604(-)$1	320	247	287	10.4647
UGGUCAGGGCUGAUGGGCGGUGUCUGCAAUCUGAGCCUCU	chr7:947742-947980(-)$1	238	97	137	11.6820
CAGUGGGAGUGGCACGAGGUGGGGCUUUGUGCCAGUAAAA	chr8:144669905-144670173(-)$1	268	199	239	11.0841

#DB
((((((...(((.((((.((...)))))))))..))))))	chr16:1368971-1369238(+)$1	1	64	104	14.8458
)))(((((((.(.(((..((....))..))))))))))).	chr17:80189632-80189894(+)$1	1	176	216	10.8243
(((((((((((...(((((......)))))...)))))).	chr4:1225619-1225872(-)$1	1	162	202	11.1420
((((((.(((((...((((.....))))))).))))))))	chr22:50727480-50727759(-)$1	1	102	142	14.0800
(((....((((..(.(((((......)))))).)))))))	chr9:138378804-138379087(+)$1	1	169	209	12.1965
.((((((...((((..((((...))))))))..)))))).	chr7:1157282-1157568(-)$1	1	107	147	12.6959
.)).(((((((....((((......))))...))))))).	chr19:1167344-1167631(-)$1	1	48	88	13.0506
((((((((.(((.(((..(((...))).))).)))))).)	chr16:69355167-69355445(-)$1	1	140	180	12.8978
.(((((((((((.((((......)))))))))))))))((	chr7:73017673-73017928(-)$1	1	71	111	13.7462
(((((((((((..(((((......)))))....)))).))	chr16:89467310-89467583(-)$1	1	226	266	11.1497
(..(((..((((((...(((...))).))))))..)))))	chr1:3487043-3487288(-)$1	1	200	240	11.2323
((.(((...(((.(((((.........))))).)))))).	chr7:290238-290569(+)$1	1	121	161	11.6347
((((((((..(..(((......)))..).))).)))))).	chr16:596216-596476(+)$1	1	143	183	11.3995
((((..(((.(((((.((((.....))))....)))))))	chr6:138754338-138754594(-)$1	1	57	97	11.0610
((.(((...(((....((((....))))....)))..)))	chr11:70256161-70256460(+)$1	1	166	206	14.6558
((((((...((((..((((......))))..))))...))	chr22:50277368-50277649(+)$1	1	39	79	13.8069
((.(.((.....(.(((.(....).))).)...)).).))	chr7:64499119-64499391(+)$1	1	124	164	12.1527
((((((...((((((((((..(((....)))..)))))))	chr22:45125780-45126046(+)$1	1	137	177	10.4652
(..(((..((((..(((((....).))))..).)))))).	chr4:1240040-1240264(-)$1	1	84	124	13.9676
((...((((((((((((.((....)).)))))))))))).	chr2:236543477-236543736(+)$1	1	59	99	12.9456
))).((.((((((..((((......))))....)))))).	chr7:205452-205713(+)$1	1	202	242	12.2632
(((((..(((.(((..((((...))))...))).)))..)	chr4:1797270-1797511(+)$1	1	32	72	12.1990
(((..(((.(((((.((((.....)))).)))))))))))	chr12:12714602-12714890(-)$1	1	112	152	11.5282
(((.(((((..((((.(..(...)..)...))))...)))	chr7:158200318-158200588(-)$1	1	158	198	11.7135
((((((((((((.((((((......))).))).)))))))	chr21:47563001-47563257(-)$1	1	63	103	14.0442
(.(((....(((.(((((......)))))..)))..))).	chr7:157650091-157650392(-)$1	1	33	73	13.4101
(((((((..(((...((......))...).)).)))))))	chr18:30351506-30351747(+)$1	1	37	77	13.9057
((((((.....(.((.(.(((......)))).)).)))))	chr14:19888033-19888292(-)$1	1	17	57	11.7170
)))))((((((((((((((....))))...))))))))))	chr17:79963065-79963331(+)$1	1	125	165	14.7715
((((((.(.((((.(((.((....)).))))))).).)))	chr22:45724198-45724429(+)$1	1	92	132	11.8645
(((((....(.(((...(((...((.(((((((((((((.	chr21:9911444-9911692(-)$1	1	61	101	10.8581
(((((((.(((...((((.....))))...))))))))))	chr17:79860493-79860770(-)$1	1	30	70	12.3176
(((((((..(((....((((...))))....)))....))	chr2:241562080-241562419(+)$1	1	254	294	16.5142
((((((.(((.(.((((.((....)))))).).)))..))	chr7:157866481-157866749(-)$1	1	80	120	11.0637
((((((((.(((.((((......))))..))).)))))))	chr12:104697337-104697643(+)$1	1	137	177	15.7599
(.((((.(.(((..((((....))).)..))).).)))).	chr13:113380464-113380820(+)$1	1	101	141	11.7539
..((((((((((...(((.....)))...)))))))))).	chr2:101492989-101493257(+)$1	1	4	44	11.8242
((((((((.(((..((((......))))))).))))))))	chr1:245026472-245026751(-)$1	1	127	167	16.4842
((.(((((((((((..((((...))))..)).))))))))	chr16:89462557-89462921(-)$1	1	89	129	13.9497
(((.((((..(.((.(((......))).)).)..)))).)	chr6:31600428-31600676(+)$1	1	87	127	11.2384
((((.((..((((((((......))))).)))..)).)).	chr2:3454206-3454471(+)$1	1	202	242	11.3119
((((((.(.((((.(((.((....)).))))))).).)))	chr22:45724171-45724398(+)$1	1	119	159	11.8645
((.(.((...(((..((.((((...)))).))..)))...	chr20:62312797-62313082(+)$1	1	180	220	11.3817
((..((((.(((..((((.....))))..)))))))...)	chr4:847097-847371(-)$1	1	19	59	12.4276
.(((((((((.....((((....))))..))))))))).)	chr14:105715317-105715582(-)$1	1	131	171	13.7982
((((((.(.(((((.(((((...))))))))))..).)))	chr2:138749738-138750013(+)$1	1	188	228	12.3413
((((((((.(((...(((((...))))).)))))))))))	chr18:30350889-30351153(+)$1	1	181	221	12.0727
.((.((.(..(((..(((((......)))))..))).).)	chr17:80534052-80534323(+)$1	1	49	89	12.6265
(.(((.(.((..(.(.((((....)))).).)..)).).)	chr17:80848057-80848329(+)$1	1	76	116	12.8736
(((((..(((.((((...((.....))...))))))).))	chr8:124414503-124414822(-)$1	1	125	165	11.4032
.((((.((.((((((((((......))))....)))))))	chr8:594027-594303(-)$1	1	146	186	11.9818
((.(((((..((.(.((((...))))..).)).)))))))	chr20:17661743-17661986(-)$1	1	65	105	11.8457
(.(..(((..((...(((....)))))..)))..).))))	chr14:23450758-23451026(-)$1	1	16	56	11.6445
((((..(((((((((.((((....)))).)).))))))))	chr1:6516790-6517030(+)$1	1	67	107	11.8602
(.(((((((....((((((......))).)))..))))))	chr7:2672539-2672799(+)$1	1	14	54	14.4379
((((....((((....(.(((...))))))))...)))))	chr16:585125-585386(+)$1	1	85	125	12.0363
..((((...(.((..((((....))))..)).)...))))	chr19:57325425-57325737(-)$1	1	196	236	12.4071
(((..(((.(((((((.(((...))).)))..))))))).	chr13:114186144-114186355(+)$1	1	1	41	11.8087
(((((....((((((..((....))..))).)))..))))	chr3:196695284-196695604(-)$1	1	247	287	10.4647
.((.((((((((((..((((...)))).)))..)))).))	chr7:947742-947980(-)$1	1	97	137	11.6820
(.((((...(((((((((((...)))))))))))......	chr8:144669905-144670173(-)$1	1	199	239	11.0841

#PSSM
f : 0.13	h : 0.11	e : 0.11	g : 0.09	i : 0.09	c : 0.09	d : 0.06	: : 0.04	b : 0.04	= : 0.04	[ : 0.03	! : 0.03	] : 0.01	G : 0.01	a : 0.01	" : 0.01	
f : 0.11	i : 0.11	h : 0.11	e : 0.11	g : 0.09	[ : 0.09	d : 0.06	b : 0.06	= : 0.06	c : 0.06	! : 0.03	G : 0.01	: : 0.01	" : 0.01	
g : 0.11	i : 0.11	d : 0.09	h : 0.09	e : 0.09	[ : 0.09	f : 0.08	b : 0.06	= : 0.06	c : 0.06	! : 0.04	" : 0.01	G : 0.01	a : 0.01	
i : 0.13	e : 0.11	g : 0.09	c : 0.09	f : 0.08	h : 0.08	= : 0.06	! : 0.06	[ : 0.06	d : 0.06	: : 0.03	a : 0.03	b : 0.03	# : 0.01	" : 0.01	
i : 0.13	g : 0.11	c : 0.11	e : 0.09	d : 0.09	h : 0.08	! : 0.08	f : 0.06	= : 0.06	[ : 0.04	b : 0.04	# : 0.03	" : 0.01	
c : 0.16	g : 0.13	i : 0.13	b : 0.09	# : 0.08	= : 0.08	d : 0.08	! : 0.06	h : 0.04	e : 0.04	f : 0.03	[ : 0.03	
[ : 0.13	" : 0.11	c : 0.11	i : 0.09	g : 0.08	# : 0.08	b : 0.08	= : 0.06	! : 0.06	f : 0.03	e : 0.03	h : 0.03	d : 0.03	$ : 0.01	a : 0.01	
" : 0.14	c : 0.14	g : 0.08	d : 0.08	! : 0.08	a : 0.08	= : 0.06	# : 0.06	i : 0.06	f : 0.03	b : 0.03	$ : 0.03	e : 0.03	[ : 0.03	h : 0.01	
[ : 0.19	" : 0.14	! : 0.13	c : 0.09	g : 0.08	d : 0.06	= : 0.06	f : 0.04	# : 0.04	b : 0.03	$ : 0.03	i : 0.03	e : 0.01	
c : 0.31	d : 0.13	= : 0.09	! : 0.09	g : 0.06	f : 0.06	" : 0.03	$ : 0.03	e : 0.03	b : 0.03	a : 0.03	i : 0.03	[ : 0.01	# : 0.01	
c : 0.29	d : 0.14	[ : 0.09	= : 0.09	f : 0.06	g : 0.04	e : 0.04	$ : 0.04	b : 0.04	a : 0.03	! : 0.03	i : 0.01	# : 0.01	
c : 0.31	d : 0.13	= : 0.09	a : 0.08	! : 0.06	f : 0.04	e : 0.04	b : 0.04	" : 0.03	# : 0.03	$ : 0.03	g : 0.03	i : 0.01	[ : 0.01	
[ : 0.18	" : 0.11	! : 0.11	d : 0.11	c : 0.09	# : 0.08	e : 0.06	= : 0.06	f : 0.04	b : 0.04	a : 0.03	$ : 0.01	g : 0.01	
c : 0.16	! : 0.14	d : 0.11	" : 0.11	e : 0.11	# : 0.06	[ : 0.06	= : 0.06	b : 0.06	a : 0.03	f : 0.03	$ : 0.01	
d : 0.16	c : 0.16	! : 0.14	" : 0.11	e : 0.09	[ : 0.08	# : 0.06	= : 0.06	b : 0.03	a : 0.03	$ : 0.01	f : 0.01	
d : 0.29	c : 0.21	e : 0.14	! : 0.08	[ : 0.08	" : 0.04	# : 0.04	= : 0.04	b : 0.03	
d : 0.44	e : 0.14	c : 0.14	! : 0.04	" : 0.04	= : 0.04	a : 0.04	b : 0.03	o : 0.01	[ : 0.01	
d : 0.37	[ : 0.14	c : 0.14	e : 0.13	o : 0.08	! : 0.04	= : 0.03	" : 0.01	b : 0.01	
d : 0.32	o : 0.14	b : 0.13	c : 0.13	e : 0.08	n : 0.04	a : 0.03	= : 0.03	m : 0.03	r : 0.01	! : 0.01	
o : 0.26	d : 0.16	m : 0.13	b : 0.11	c : 0.09	n : 0.08	e : 0.06	r : 0.01	! : 0.01	a : 0.01	l : 0.01	= : 0.01	
o : 0.29	m : 0.26	l : 0.21	n : 0.11	c : 0.04	r : 0.01	! : 0.01	" : 0.01	d : 0.01	
o : 0.31	m : 0.26	l : 0.24	n : 0.11	r : 0.01	c : 0.01	" : 0.01	d : 0.01	
o : 0.29	l : 0.24	m : 0.22	n : 0.11	c : 0.06	r : 0.01	" : 0.01	d : 0.01	
o : 0.22	d : 0.21	m : 0.13	c : 0.11	b : 0.06	n : 0.06	l : 0.04	a : 0.04	e : 0.04	r : 0.01	= : 0.01	
d : 0.31	o : 0.16	b : 0.14	c : 0.14	e : 0.08	n : 0.03	] : 0.03	r : 0.01	m : 0.01	2 : 0.01	l : 0.01	= : 0.01	
d : 0.44	c : 0.14	b : 0.11	e : 0.09	o : 0.04	2 : 0.04	r : 0.01	m : 0.01	3 : 0.01	[ : 0.01	] : 0.01	= : 0.01	
d : 0.44	e : 0.13	c : 0.09	] : 0.08	2 : 0.06	a : 0.03	3 : 0.03	= : 0.03	b : 0.03	r : 0.01	m : 0.01	o : 0.01	
d : 0.26	2 : 0.14	e : 0.14	c : 0.13	3 : 0.11	= : 0.06	] : 0.04	a : 0.03	f : 0.01	m : 0.01	4 : 0.01	
d : 0.18	c : 0.18	] : 0.14	e : 0.11	2 : 0.11	3 : 0.09	= : 0.06	4 : 0.03	a : 0.03	f : 0.01	b : 0.01	
c : 0.34	e : 0.09	3 : 0.09	4 : 0.09	= : 0.08	b : 0.06	d : 0.04	2 : 0.04	] : 0.04	a : 0.03	f : 0.01	i : 0.01	
c : 0.29	d : 0.09	= : 0.09	4 : 0.09	b : 0.09	e : 0.08	2 : 0.06	] : 0.06	3 : 0.04	f : 0.01	a : 0.01	i : 0.01	
c : 0.24	] : 0.11	a : 0.09	= : 0.09	d : 0.09	2 : 0.08	4 : 0.08	3 : 0.04	e : 0.04	b : 0.04	f : 0.01	i : 0.01	
2 : 0.18	] : 0.16	c : 0.11	d : 0.11	= : 0.09	4 : 0.06	g : 0.04	3 : 0.04	i : 0.04	b : 0.03	e : 0.03	f : 0.01	h : 0.01	a : 0.01	
d : 0.16	2 : 0.14	c : 0.14	= : 0.11	f : 0.08	i : 0.08	g : 0.06	b : 0.04	e : 0.04	h : 0.03	3 : 0.03	] : 0.01	a : 0.01	
c : 0.16	d : 0.11	g : 0.09	i : 0.09	= : 0.09	f : 0.08	2 : 0.06	] : 0.06	b : 0.04	3 : 0.04	e : 0.03	h : 0.03	4 : 0.01	a : 0.01	6 : 0.01	
c : 0.16	d : 0.11	g : 0.09	f : 0.09	i : 0.09	= : 0.09	a : 0.06	2 : 0.04	3 : 0.04	e : 0.03	] : 0.03	h : 0.03	b : 0.03	4 : 0.01	6 : 0.01	
c : 0.16	f : 0.11	= : 0.11	g : 0.09	i : 0.09	d : 0.09	] : 0.09	e : 0.04	3 : 0.04	2 : 0.03	h : 0.03	a : 0.01	4 : 0.01	6 : 0.01	
g : 0.14	f : 0.11	i : 0.11	c : 0.11	= : 0.11	] : 0.06	e : 0.06	3 : 0.04	h : 0.04	d : 0.04	2 : 0.03	a : 0.03	4 : 0.01	b : 0.01	6 : 0.01	
g : 0.14	c : 0.13	= : 0.13	f : 0.11	i : 0.11	] : 0.08	e : 0.06	h : 0.06	d : 0.04	b : 0.03	3 : 0.03	2 : 0.01	6 : 0.01	
i : 0.11	] : 0.11	g : 0.09	e : 0.09	h : 0.08	c : 0.08	= : 0.08	b : 0.06	: : 0.04	d : 0.04	f : 0.04	3 : 0.03	9 : 0.01	4 : 0.01	! : 0.01	2 : 0.01	6 : 0.01	

#score	762.4878411453507
#seq	61
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_UTR_m3_run1.txt

#BEAR
gggggqqqqqqqqggggg	chr11:5269439-5269648(-)$1	209	80	98	14.3601
eeeeeqqqqqqqqeeeee	chr2:74383153-74383397(-)$1	244	204	222	14.9768
eeeeeqqqqqqqqeeeee	chr7:102732851-102733119(+)$1	268	151	169	14.9768
cc[bbqqqqqqqqbb333	chr17:73842535-73842869(-)$1	334	161	179	12.9779
gggggqqqqqqqqggggg	chr15:69071487-69071756(-)$1	269	107	125	14.3601
fffffqqqqqqqqfffff	chr4:88258139-88258439(-)$1	300	118	136	13.4383
eeeeeqqqqqqqqeeeee	chr6:30656212-30656504(-)$1	292	136	154	14.9768
eeeeeqqqqqqqqeeeee	chr12:93794800-93795116(+)$1	316	219	237	14.9768
eeeeeqqqqqqqqeeeee	chr3:150261978-150262196(-)$1	218	169	187	14.9768
eeeeeqqqqqqqqeeeee	chr1:229460409-229460718(-)$1	309	230	248	14.9768
hhcccqqqqqqqqcccdd	chr1:43392198-43392448(-)$1	250	66	84	13.5987
!!cccqqqqqqqqccc33	chr10:18964927-18965196(+)$1	269	210	228	14.4675
i[cccqqqqqqqqccc22	chr1:150548928-150549184(-)$1	256	193	211	14.0127
gddddqqqqqqqqdddd:	chr12:111158277-111158486(-)$1	209	75	93	12.8828
fffffqqqqqqqqfffff	chr6:129898896-129899217(-)$1	321	127	145	13.4383
fffffqqqqqqqqfffff	chr15:42450920-42451236(-)$1	316	146	164	13.4383
eeeeeqqqqqqqqeeeee	chr3:33907919-33908186(+)$1	267	161	179	14.9768
eeeeeqqqqqqqqeeeee	chr7:135614477-135614693(-)$1	216	60	78	14.9768
gggggqqqqqqqqggggg	chr10:70496619-70496906(+)$1	287	258	276	14.3601
!!cccqqqqqqqqccc33	chr11:6634630-6634876(-)$1	246	194	212	14.4675
eeeeeqqqqqqqqeeeee	chr21:46269843-46270096(-)$1	253	178	196	14.9768
[ddddqqqqqqqqdddd]	chr11:64537395-64537626(-)$1	231	210	228	13.9401
e[a[aqqqqqqqqa]a]e	chr16:57287108-57287379(+)$1	271	238	256	14.0643
d[cccqqqqqqqqccc]d	chr1:28527187-28527452(-)$1	265	191	209	13.9596
gggggqqqqqqqqggggg	chr4:170641469-170641738(+)$1	269	63	81	14.3601
!ddddqqqqqqqqdddd2	chr3:148748234-148748573(-)$1	339	85	103	13.8338
iiiiiqqqqqqqqiiiii	chr1:52248156-52248416(+)$1	260	234	252	14.1216
"ddddqqqqqqqqdddd2	chr1:37959001-37959301(-)$1	300	258	276	13.7087
!ddddqqqqqqqqdddd2	chr7:120936803-120937055(+)$1	252	184	202	13.8338
eeeeeqqqqqqqqeeeee	chr1:150783224-150783498(-)$1	274	212	230	14.9768
=====qqqqqqqq=====	chr9:114984588-114984843(-)$1	255	204	222	14.3507
[ddddqqqqqqqqddddc	chr10:71161083-71161358(+)$1	275	97	115	13.8111
gggggqqqqqqqqggggg	chr1:179043662-179043907(+)$1	245	140	158	14.3601
eeeeeqqqqqqqqeeeee	chr19:33088317-33088581(-)$1	264	193	211	14.9768
=====qqqqqqqq=====	chr5:95131635-95131907(+)$1	272	68	86	14.3507
dd!!aqqqqqqqqa22dd	chr2:37431000-37431271(+)$1	271	55	73	13.0076
eeeeeqqqqqqqqeeeee	chr1:150783101-150783393(-)$1	292	107	125	14.9768
eeeeeqqqqqqqqeeeee	chr17:64801165-64801432(+)$1	267	12	30	14.9768
gggggqqqqqqqqggggg	chr1:95658482-95658761(+)$1	279	221	239	14.3601
eeeeeqqqqqqqqeeeee	chr1:47682254-47682485(-)$1	231	172	190	14.9768
eeeeeqqqqqqqqeeeee	chr8:124220022-124220279(+)$1	257	3	21	14.9768
eeeeeqqqqqqqqeeeee	chr6:49573106-49573367(-)$1	261	21	39	14.9768
fffffqqqqqqqqfffff	chr3:33907986-33908333(+)$1	347	94	112	13.4383
eeebbqqqqqqqqbb]ee	chr12:124082327-124082533(+)$1	206	148	166	13.4734
eeeeeqqqqqqqqeeeee	chr11:61133415-61133778(+)$1	363	299	317	14.9768
fffffqqqqqqqqfffff	chr19:3976134-3976369(-)$1	235	135	153	13.4383
eeeeeqqqqqqqqeeeee	chr17:46699357-46699618(-)$1	261	189	207	14.9768
gggggqqqqqqqqggggg	chrX:123235793-123236072(+)$1	279	147	165	14.3601
gggggqqqqqqqqggggg	chr2:55199557-55199814(-)$1	257	184	202	14.3601
eee[aqqqqqqqqa]eee	chr3:150262033-150262311(-)$1	278	9	27	14.5247
ddcccqqqqqqqqccc22	chr14:104378563-104378856(-)$1	293	109	127	13.6991
gddddqqqqqqqqdddd:	chr12:111158202-111158468(-)$1	266	57	75	12.8828
eeeeeqqqqqqqqeeeee	chr21:46269751-46269996(-)$1	245	78	96	14.9768
!!cccqqqqqqqqccc]e	chr3:15483668-15483936(+)$1	268	66	84	14.4691
:ddddqqqqqqqqdddde	chr2:43450650-43450924(-)$1	274	113	131	12.8281
fffffqqqqqqqqfffff	chr3:185209374-185209647(-)$1	273	112	130	13.4383
gddddqqqqqqqqdddd:	chr12:111158335-111158571(-)$1	236	160	178	12.8828
g"""aqqqqqqqqa333g	chr1:115247822-115248064(-)$1	242	87	105	13.7009
!!cccqqqqqqqqccc33	chr3:138373848-138374147(-)$1	299	140	158	14.4675
a[cccqqqqqqqqccc]a	chr15:59931035-59931267(-)$1	232	63	81	14.1078
gggggqqqqqqqqggggg	chr9:114981675-114981908(-)$1	233	121	139	14.3601
eeeeeqqqqqqqqeeeee	chr9:114696773-114697051(+)$1	278	5	23	14.9768
fffffqqqqqqqqfffff	chr17:34050747-34050969(+)$1	222	105	123	13.4383
b[cccqqqqqqqqccc]b	chr12:24970281-24970564(-)$1	283	112	130	13.5820
!!cccqqqqqqqqcccee	chr8:30643470-30643754(-)$1	284	250	268	14.5236
iii[aqqqqqqqqa]iii	chr4:57368229-57368480(+)$1	251	208	226	13.9918
"""bbqqqqqqqqbb333	chr16:11444638-11444909(+)$1	271	197	215	12.9520
eeeeeqqqqqqqqeeeee	chr4:100802665-100802955(-)$1	290	80	98	14.9768
#ddddqqqqqqqqdddd3	chr17:27051011-27051292(+)$1	281	72	90	13.8524
b!!bbqqqqqqqqbb333	chr11:125526526-125526808(+)$1	282	7	25	12.9042
gggggqqqqqqqqggggg	chr2:74382213-74382454(-)$1	241	68	86	14.3601
[ddddqqqqqqqqdddda	chr1:40539296-40539571(-)$1	275	203	221	13.8331

#otherMatches

#Seq PSSM
AGCUUUCAAGGAUAGGCU	chr11:5269439-5269648(-)$1	209	80	98	14.3601
AUCUGUGUCACUUCAGAU	chr2:74383153-74383397(-)$1	244	204	222	14.9768
UGACAAACAUGACUGUUA	chr7:102732851-102733119(+)$1	268	151	169	14.9768
GUCUGAUCAUAAACAAUU	chr17:73842535-73842869(-)$1	334	161	179	12.9779
UUCUGUAAAAUAUUAGAA	chr15:69071487-69071756(-)$1	269	107	125	14.3601
UUCAAUAUCAUUUUUGAG	chr4:88258139-88258439(-)$1	300	118	136	13.4383
CUGGCUGCUUCAUGCCAG	chr6:30656212-30656504(-)$1	292	136	154	14.9768
CAGAGGUUACAUAUUCUG	chr12:93794800-93795116(+)$1	316	219	237	14.9768
GCAAUAAAAUUUGAUUGU	chr3:150261978-150262196(-)$1	218	169	187	14.9768
GUCAGCACUACUACUGAU	chr1:229460409-229460718(-)$1	309	230	248	14.9768
GAGACUAAGCCCUGUCGA	chr1:43392198-43392448(-)$1	250	66	84	13.5987
CAUAGCAUUUUUACUACC	chr10:18964927-18965196(+)$1	269	210	228	14.4675
GAACGAAUUGAUGUGUAA	chr1:150548928-150549184(-)$1	256	193	211	14.0127
AGGGAUUGCUUUUUCCUC	chr12:111158277-111158486(-)$1	209	75	93	12.8828
UCCUGCUGUAUCACAGGA	chr6:129898896-129899217(-)$1	321	127	145	13.4383
AAGAAUGUGUGUUUUCUU	chr15:42450920-42451236(-)$1	316	146	164	13.4383
GUGUACUAAACUCUACGC	chr3:33907919-33908186(+)$1	267	161	179	14.9768
GUGGCCUCACACUGCUGC	chr7:135614477-135614693(-)$1	216	60	78	14.9768
UCAUUUUACAGGUAGUGA	chr10:70496619-70496906(+)$1	287	258	276	14.3601
UAGAAUUCAGGCUUUCCC	chr11:6634630-6634876(-)$1	246	194	212	14.4675
UCAGGCUGAUUUCCCUGA	chr21:46269843-46270096(-)$1	253	178	196	14.9768
UAGGAUAUAGAAUUCCUU	chr11:64537395-64537626(-)$1	231	210	228	13.9401
AGUAGUUCAAUUCCCAGU	chr16:57287108-57287379(+)$1	271	238	256	14.0643
GAGCAGCAUCUGAUGCCC	chr1:28527187-28527452(-)$1	265	191	209	13.9596
UCCCUAUUUCUAGAGGGA	chr4:170641469-170641738(+)$1	269	63	81	14.3601
AUAAUAAUGUGGGAUUAG	chr3:148748234-148748573(-)$1	339	85	103	13.8338
GCUGAGGGUACUGUCAGU	chr1:52248156-52248416(+)$1	260	234	252	14.1216
UCUUAAAUCUUUCUGAGU	chr1:37959001-37959301(-)$1	300	258	276	13.7087
AAAAAAACACCUAUUUUG	chr7:120936803-120937055(+)$1	252	184	202	13.8338
UUUGCUUUAGAGUGCAAG	chr1:150783224-150783498(-)$1	274	212	230	14.9768
AGAAGGUGGGUUAUUUCU	chr9:114984588-114984843(-)$1	255	204	222	14.3507
CAUUCAUCCAACAGAGUU	chr10:71161083-71161358(+)$1	275	97	115	13.8111
UCUGAUGAUAAAUUUAGA	chr1:179043662-179043907(+)$1	245	140	158	14.3601
CUACACGUGCACCUGUAG	chr19:33088317-33088581(-)$1	264	193	211	14.9768
AUAGGGGACCAGAUUUGU	chr5:95131635-95131907(+)$1	272	68	86	14.3507
uauaccacauuuugcuua	chr2:37431000-37431271(+)$1	271	55	73	13.0076
UUUGCUUUAGAGUGCAAG	chr1:150783101-150783393(-)$1	292	107	125	14.9768
GCUGACUCUAGCAUCAGC	chr17:64801165-64801432(+)$1	267	12	30	14.9768
AAUAUCAGUAUUCAUAUU	chr1:95658482-95658761(+)$1	279	221	239	14.3601
GCCGACAACUAUUUCGGC	chr1:47682254-47682485(-)$1	231	172	190	14.9768
UUUGAAAAGACACUCAAA	chr8:124220022-124220279(+)$1	257	3	21	14.9768
UGUAAAAAUGUCCUUAUG	chr6:49573106-49573367(-)$1	261	21	39	14.9768
GUGUACUAAACUCUACGC	chr3:33907986-33908333(+)$1	347	94	112	13.4383
UUUUCAUGUUCAGGAUAA	chr12:124082327-124082533(+)$1	206	148	166	13.4734
UUuaauuuuuauuuuaaa	chr11:61133415-61133778(+)$1	363	299	317	14.9768
UUUAACAAACGCAUUAAG	chr19:3976134-3976369(-)$1	235	135	153	13.4383
CCUUCCAACAAAAGAAGG	chr17:46699357-46699618(-)$1	261	189	207	14.9768
GUGGUAGCCAAAAACCAU	chrX:123235793-123236072(+)$1	279	147	165	14.3601
AGAAGAAGAAAUAUUUCU	chr2:55199557-55199814(-)$1	257	184	202	14.3601
GCUCUUUCUUUUUACAGC	chr3:150262033-150262311(-)$1	278	9	27	14.5247
ACUGAGCCACCCAUCAUU	chr14:104378563-104378856(-)$1	293	109	127	13.6991
AGGGAUUGCUUUUUCCUC	chr12:111158202-111158468(-)$1	266	57	75	12.8828
UCAGGCUGAUUUCCCUGA	chr21:46269751-46269996(-)$1	245	78	96	14.9768
uguguguguaugAAUGGU	chr3:15483668-15483936(+)$1	268	66	84	14.4691
CCCUUGCAUUCCAAAGGU	chr2:43450650-43450924(-)$1	274	113	131	12.8281
AUAUAAUUUCAUCUGUGU	chr3:185209374-185209647(-)$1	273	112	130	13.4383
AGGGAUUGCUUUUUCCUC	chr12:111158335-111158571(-)$1	236	160	178	12.8828
GAACCUGUUAAAUGCUGU	chr1:115247822-115248064(-)$1	242	87	105	13.7009
AUGGAUAAUCAUUUCCUG	chr3:138373848-138374147(-)$1	299	140	158	14.4675
CCAGUAGAAAGAAACUUG	chr15:59931035-59931267(-)$1	232	63	81	14.1078
GUUCCAGAGAACAGGGAU	chr9:114981675-114981908(-)$1	233	121	139	14.3601
AGCUUUAAAUUCUGAGUU	chr9:114696773-114697051(+)$1	278	5	23	14.9768
GUGCUAACAUUAGGGCAC	chr17:34050747-34050969(+)$1	222	105	123	13.4383
CAUCACUGUUUUUUGAAG	chr12:24970281-24970564(-)$1	283	112	130	13.5820
AACCAUUUUCCUUUGGAC	chr8:30643470-30643754(-)$1	284	250	268	14.5236
AGACUGAAAGUGGAAUCU	chr4:57368229-57368480(+)$1	251	208	226	13.9918
UCUGCUGCCCCUUGCUUU	chr16:11444638-11444909(+)$1	271	197	215	12.9520
AUGGAUGAGAGAUUCUAU	chr4:100802665-100802955(-)$1	290	80	98	14.9768
UGAUCAUUCCAGAGAUCU	chr17:27051011-27051292(+)$1	281	72	90	13.8524
acugacuugaaccucuuc	chr11:125526526-125526808(+)$1	282	7	25	12.9042
AAGAAAACAUUUAUUUUU	chr2:74382213-74382454(-)$1	241	68	86	14.3601
UCUUGCCAUAUUUCAAGC	chr1:40539296-40539571(-)$1	275	203	221	13.8331

#DB
(((((........)))))	chr11:5269439-5269648(-)$1	1	80	98	14.3601
(((((........)))))	chr2:74383153-74383397(-)$1	1	204	222	14.9768
(((((........)))))	chr7:102732851-102733119(+)$1	1	151	169	14.9768
((.((........))...	chr17:73842535-73842869(-)$1	1	161	179	12.9779
(((((........)))))	chr15:69071487-69071756(-)$1	1	107	125	14.3601
(((((........)))))	chr4:88258139-88258439(-)$1	1	118	136	13.4383
(((((........)))))	chr6:30656212-30656504(-)$1	1	136	154	14.9768
(((((........)))))	chr12:93794800-93795116(+)$1	1	219	237	14.9768
(((((........)))))	chr3:150261978-150262196(-)$1	1	169	187	14.9768
(((((........)))))	chr1:229460409-229460718(-)$1	1	230	248	14.9768
))(((........)))((	chr1:43392198-43392448(-)$1	1	66	84	13.5987
..(((........)))..	chr10:18964927-18965196(+)$1	1	210	228	14.4675
(.(((........)))..	chr1:150548928-150549184(-)$1	1	193	211	14.0127
)((((........)))).	chr12:111158277-111158486(-)$1	1	75	93	12.8828
(((((........)))))	chr6:129898896-129899217(-)$1	1	127	145	13.4383
(((((........)))))	chr15:42450920-42451236(-)$1	1	146	164	13.4383
(((((........)))))	chr3:33907919-33908186(+)$1	1	161	179	14.9768
(((((........)))))	chr7:135614477-135614693(-)$1	1	60	78	14.9768
(((((........)))))	chr10:70496619-70496906(+)$1	1	258	276	14.3601
..(((........)))..	chr11:6634630-6634876(-)$1	1	194	212	14.4675
(((((........)))))	chr21:46269843-46270096(-)$1	1	178	196	14.9768
.((((........)))).	chr11:64537395-64537626(-)$1	1	210	228	13.9401
(.(.(........).).)	chr16:57287108-57287379(+)$1	1	238	256	14.0643
(.(((........))).)	chr1:28527187-28527452(-)$1	1	191	209	13.9596
(((((........)))))	chr4:170641469-170641738(+)$1	1	63	81	14.3601
.((((........)))).	chr3:148748234-148748573(-)$1	1	85	103	13.8338
(((((........)))))	chr1:52248156-52248416(+)$1	1	234	252	14.1216
.((((........)))).	chr1:37959001-37959301(-)$1	1	258	276	13.7087
.((((........)))).	chr7:120936803-120937055(+)$1	1	184	202	13.8338
(((((........)))))	chr1:150783224-150783498(-)$1	1	212	230	14.9768
(((((........)))))	chr9:114984588-114984843(-)$1	1	204	222	14.3507
.((((........)))))	chr10:71161083-71161358(+)$1	1	97	115	13.8111
(((((........)))))	chr1:179043662-179043907(+)$1	1	140	158	14.3601
(((((........)))))	chr19:33088317-33088581(-)$1	1	193	211	14.9768
(((((........)))))	chr5:95131635-95131907(+)$1	1	68	86	14.3507
((..(........)..))	chr2:37431000-37431271(+)$1	1	55	73	13.0076
(((((........)))))	chr1:150783101-150783393(-)$1	1	107	125	14.9768
(((((........)))))	chr17:64801165-64801432(+)$1	1	12	30	14.9768
(((((........)))))	chr1:95658482-95658761(+)$1	1	221	239	14.3601
(((((........)))))	chr1:47682254-47682485(-)$1	1	172	190	14.9768
(((((........)))))	chr8:124220022-124220279(+)$1	1	3	21	14.9768
(((((........)))))	chr6:49573106-49573367(-)$1	1	21	39	14.9768
(((((........)))))	chr3:33907986-33908333(+)$1	1	94	112	13.4383
(((((........)).))	chr12:124082327-124082533(+)$1	1	148	166	13.4734
(((((........)))))	chr11:61133415-61133778(+)$1	1	299	317	14.9768
(((((........)))))	chr19:3976134-3976369(-)$1	1	135	153	13.4383
(((((........)))))	chr17:46699357-46699618(-)$1	1	189	207	14.9768
(((((........)))))	chrX:123235793-123236072(+)$1	1	147	165	14.3601
(((((........)))))	chr2:55199557-55199814(-)$1	1	184	202	14.3601
(((.(........).)))	chr3:150262033-150262311(-)$1	1	9	27	14.5247
(((((........)))..	chr14:104378563-104378856(-)$1	1	109	127	13.6991
)((((........)))).	chr12:111158202-111158468(-)$1	1	57	75	12.8828
(((((........)))))	chr21:46269751-46269996(-)$1	1	78	96	14.9768
..(((........))).)	chr3:15483668-15483936(+)$1	1	66	84	14.4691
.((((........))))(	chr2:43450650-43450924(-)$1	1	113	131	12.8281
(((((........)))))	chr3:185209374-185209647(-)$1	1	112	130	13.4383
)((((........)))).	chr12:111158335-111158571(-)$1	1	160	178	12.8828
(...(........)...)	chr1:115247822-115248064(-)$1	1	87	105	13.7009
..(((........)))..	chr3:138373848-138374147(-)$1	1	140	158	14.4675
(.(((........))).)	chr15:59931035-59931267(-)$1	1	63	81	14.1078
(((((........)))))	chr9:114981675-114981908(-)$1	1	121	139	14.3601
(((((........)))))	chr9:114696773-114697051(+)$1	1	5	23	14.9768
(((((........)))))	chr17:34050747-34050969(+)$1	1	105	123	13.4383
(.(((........))).)	chr12:24970281-24970564(-)$1	1	112	130	13.5820
..(((........)))))	chr8:30643470-30643754(-)$1	1	250	268	14.5236
(((.(........).)))	chr4:57368229-57368480(+)$1	1	208	226	13.9918
...((........))...	chr16:11444638-11444909(+)$1	1	197	215	12.9520
(((((........)))))	chr4:100802665-100802955(-)$1	1	80	98	14.9768
.((((........)))).	chr17:27051011-27051292(+)$1	1	72	90	13.8524
(..((........))...	chr11:125526526-125526808(+)$1	1	7	25	12.9042
(((((........)))))	chr2:74382213-74382454(-)$1	1	68	86	14.3601
.((((........)))))	chr1:40539296-40539571(-)$1	1	203	221	13.8331

#PSSM
e : 0.33	g : 0.19	f : 0.09	! : 0.09	i : 0.04	[ : 0.04	d : 0.04	" : 0.02	= : 0.02	b : 0.02	c : 0.01	h : 0.01	: : 0.01	a : 0.01	# : 0.01	
e : 0.31	d : 0.18	g : 0.13	f : 0.09	! : 0.08	[ : 0.06	i : 0.02	= : 0.02	" : 0.02	c : 0.01	h : 0.01	
e : 0.31	c : 0.15	d : 0.15	g : 0.13	f : 0.09	i : 0.02	= : 0.02	! : 0.02	" : 0.02	[ : 0.01	a : 0.01	
e : 0.29	c : 0.15	d : 0.15	g : 0.13	f : 0.09	b : 0.05	[ : 0.04	= : 0.02	i : 0.01	! : 0.01	" : 0.01	
e : 0.29	c : 0.15	d : 0.15	g : 0.13	f : 0.09	a : 0.06	b : 0.05	= : 0.02	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.29	c : 0.15	d : 0.15	g : 0.13	f : 0.09	a : 0.06	b : 0.05	= : 0.02	i : 0.01	
e : 0.29	c : 0.15	d : 0.15	g : 0.13	f : 0.09	b : 0.05	] : 0.04	= : 0.02	i : 0.01	2 : 0.01	3 : 0.01	
e : 0.30	c : 0.15	d : 0.15	g : 0.13	f : 0.09	3 : 0.05	i : 0.02	= : 0.02	a : 0.01	2 : 0.01	] : 0.01	
e : 0.33	d : 0.18	g : 0.13	3 : 0.09	f : 0.09	] : 0.06	2 : 0.02	i : 0.02	= : 0.02	
e : 0.37	g : 0.15	3 : 0.09	f : 0.09	2 : 0.06	d : 0.04	: : 0.04	i : 0.02	= : 0.02	a : 0.02	] : 0.01	c : 0.01	b : 0.01	

#score	1020.2492397421001
#seq	72
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_transcript_m2_run1.txt

#BEAR
======:eeeeewwwwwwwwwwwwwweeeee	chr9:136216199-136216426(+)$1	227	81	112	21.1401
:ffffff!!ccctttttttttttccc4444f	chr19:51305477-51305683(-)$1	206	25	56	23.8493
ccc$$$$$dddduuuuuuuuuuuudddd22c	chr12:112035937-112036175(-)$1	238	71	102	23.1618
fffff!!cccbbvvvvvvvvvvvvvbb]ccc	chrX:47085865-47086120(+)$1	255	173	204	22.5871
eeee[bb[bb[attttttttttta]bb]bb]	chr11:6500088-6500353(-)$1	265	42	73	22.8123
dddd!!fffffftttttttttttffffff22	chr17:42398253-42398512(-)$1	259	160	191	23.2937
b[eeeee!!cccuuuuuuuuuuuuccc22ee	chr17:7480075-7480278(+)$1	203	14	45	24.2850
cccccc!!ddddtttttttttttdddd22cc	chr19:893482-893690(+)$1	208	70	101	23.9448
ccffffff[ccctttttttttttcccfffff	chr16:85651370-85651647(+)$1	277	194	225	24.1687
cccccc[eeeeeuuuuuuuuuuuueeeee]c	chr16:88528032-88528275(+)$1	243	185	216	23.8647
hhhhhhhh[cccuuuuuuuuuuuuccc333h	chr17:79680146-79680417(+)$1	271	202	233	23.6986
"""dddd[ddddwwwwwwwwwwwwwwdddd2	chrX:153585004-153585261(-)$1	257	49	80	21.9228
c===========vvvvvvvvvvvvv======	chr2:234197461-234197672(+)$1	211	117	148	24.7003
CCddddcccwwwwwwwwwwwwwwccc]dddd	chr19:1408176-1408414(+)$1	238	122	153	19.3914
c[ccc[fffffftttttttttttffffff33	chr19:15508576-15508825(-)$1	249	159	190	24.3740
eeeeegggggggtttttttttttggggggg:	chr17:8076709-8076924(-)$1	215	110	141	22.7403
eee:::ffffffvvvvvvvvvvvvvffffff	chr11:88345883-88346101(-)$1	218	168	199	19.8961
[bb[bb[bb[auuuuuuuuuuuua]bbbbbb	chr17:29058877-29059130(+)$1	253	36	67	21.5712
cc[dddd[ddddtttttttttttdddddddd	chr1:31440908-31441124(-)$1	216	64	95	23.0007
==========[auuuuuuuuuuuua]=====	chr16:89039386-89039631(-)$1	245	167	198	25.3719
hhh[bb[bbccctttttttttttccc]bb22	chr16:89022891-89023149(-)$1	258	37	68	23.2295
::::bb[eeeeeuuuuuuuuuuuueeeeebb	chr16:88844172-88844408(-)$1	236	0	31	19.2846
hhhhhhha[abbuuuuuuuuuuuubb]a]a]	chr7:100272219-100272501(+)$1	282	69	100	22.4971
============ttttttttttt========	chr16:88537259-88537497(+)$1	238	12	43	25.1590
((dddd"""ccctttttttttttccc]dddd	chr1:26607099-26607377(+)$1	278	66	97	23.0280
============uuuuuuuuuuuu=======	chr1:109642865-109643069(+)$1	204	57	88	25.4316
bb[dddd[dddduuuuuuuuuuuudddd]dd	chr18:210248-210515(+)$1	267	7	38	23.2081
dd[bb[cccxxxxxxxxxxxxxxxccc]bb3	chr4:169607662-169607879(-)$1	217	22	53	17.2955
##iiiiiiiiiuuuuuuuuuuuuiiiiiiii	chr1:15868644-15868901(+)$1	257	27	58	23.9136
$$eeeeeyyyyyyyyyyyyyyyyeeeee333	chr10:58119525-58119794(-)$1	269	193	224	19.8991
::gggggggwwwwwwwwwwwwwwgggggggd	chr19:5094046-5094344(+)$1	298	115	146	20.3220
d!!ccc!!ddddtttttttttttdddd22cc	chr6:28117109-28117397(+)$1	288	132	163	23.9713
ccc[ffffffvvvvvvvvvvvvvffffff]c	chr12:54675756-54675969(+)$1	213	159	190	22.5294
ggggggg[ddddwwwwwwwwwwwwwwdddd]	chrX:153693224-153693519(+)$1	295	127	158	22.4626
HHffffffbbvvvvvvvvvvvvvbb22ffff	chr1:1685543-1685797(-)$1	254	206	237	19.5549
[ccc[bb"""cccssssssssssccc333bb	chr1:228333461-228333731(+)$1	270	5	36	17.7941
[eeeee[ccccccssssssssssccc]ccce	chr19:13049787-13050042(+)$1	255	216	247	17.6819
b[ccc!!eeeeettttttttttteeeeeccc	chr19:572984-573258(+)$1	274	108	139	23.6550
ee"""gggggggtttttttttttggggggg3	chr1:76252719-76252923(+)$1	204	63	94	24.3065
bb!!a[gggggggssssssssssggggggg3	chr17:65353401-65353665(-)$1	264	118	149	17.4803
bb[a!!ffffffuuuuuuuuuuuuffffff2	chr17:17717603-17717900(-)$1	297	59	90	23.9774
eccc$$$$$cccuuuuuuuuuuuuccc4444	chr16:89034370-89034654(-)$1	284	217	248	24.6159
fff[ccc!!cccssssssssssccccccfff	chr15:34652102-34652385(-)$1	283	133	164	17.8145
$eeeee"""cccvvvvvvvvvvvvvccc333	chr16:89000731-89000973(-)$1	242	177	208	24.5181
=$$$$$ffffffvvvvvvvvvvvvvffffff	chr12:133398797-133399059(-)$1	262	116	147	22.3365
hh[bb"""ddddtttttttttttdddd4444	chr16:85669023-85669283(+)$1	260	212	243	23.7722
$$$$$ffffffuuuuuuuuuuuuffffff33	chr6:160204963-160205244(-)$1	281	107	138	22.8992
ee[dddd!!cccwwwwwwwwwwwwwwccc]d	chr1:6257721-6257970(-)$1	249	82	113	22.7502

#otherMatches

#Seq PSSM
UGAGAGAUGGUGAUGACAUUUUAAACCACCA	chr9:136216199-136216426(+)$1	227	81	112	21.1401
AGCACUGGGCUCUGAUCACCCCUGAGGACAC	chr19:51305477-51305683(-)$1	206	25	56	23.8493
GCCGCGUCCCCCGUGCCGGUUAAAGGGGUAG	chr12:112035937-112036175(-)$1	238	71	102	23.1618
UGUGGUACCGGCCCCCUGACAUCCUGCUUGG	chrX:47085865-47086120(+)$1	255	173	204	22.5871
UCUUCGUGAUCGUAAUAUCCCAUCUGUGGCU	chr11:6500088-6500353(-)$1	265	42	73	22.8123
agcuuugugacuagugaccaugaaguuacuu	chr17:42398253-42398512(-)$1	259	160	191	23.2937
CAUUCCCAAGGAUGCUGGUUUCUCUCUGGGG	chr17:7480075-7480278(+)$1	203	14	45	24.2850
aggaugacacgcaaauucgugaagcguucca	chr19:893482-893690(+)$1	208	70	101	23.9448
GAUGUCUGUGGGCCUUGUGUUAACCCCAGGC	chr16:85651370-85651647(+)$1	277	194	225	24.1687
GCCCGGAGAUCUGACCCACUGCUAagaucau	chr16:88528032-88528275(+)$1	243	185	216	23.8647
AGGGCCUGAGGCUUUGCACAGUCUGCCCAGC	chr17:79680146-79680417(+)$1	271	202	233	23.6986
CCACAGACCCCCAUCCCCACCUUCCAGGGGC	chrX:153585004-153585261(-)$1	257	49	80	21.9228
CUGAGACCUCUGAUUGAAAAUCCCCCAGGGG	chr2:234197461-234197672(+)$1	211	117	148	24.7003
GGGGACCCCGAAUGAGAACCUGAGGGAGUCU	chr19:1408176-1408414(+)$1	238	122	153	19.3914
GAUCCAGUUUGUGUGUUCUCUGUGCAAAUAC	chr19:15508576-15508825(-)$1	249	159	190	24.3740
ugcguaaucaggacuugcaacacccugauug	chr17:8076709-8076924(-)$1	215	110	141	22.7403
aagacauuuaugcagccaaaaaacacaugaa	chr11:88345883-88346101(-)$1	218	168	199	19.8961
AGAAGCACGGCGGUGGGGGAGGGGGCGGCUC	chr17:29058877-29059130(+)$1	253	36	67	21.5712
GCCCUCACUUAGACUAUAGUUCACUGAUGAG	chr1:31440908-31441124(-)$1	216	64	95	23.0007
CUGGGCUUUGGAGCUGGUGGAUCAUGCAGAG	chr16:89039386-89039631(-)$1	245	167	198	25.3719
GCCAGCAGGGUCCACCAGUAACAGACACCAG	chr16:89022891-89023149(-)$1	258	37	68	23.2295
UGUGGCUGUGGCGAGACCUGGAGGGCCAUGC	chr16:88844172-88844408(-)$1	236	0	31	19.2846
GCGGUUGCACCCUCAUUUCUCUAUGGAGCGC	chr7:100272219-100272501(+)$1	282	69	100	22.4971
GGUGAGGAUGUGGCAUAGGGAAACACAUCCU	chr16:88537259-88537497(+)$1	238	12	43	25.1590
UCCUGGUCACAGCCUCUCUCACCCUGCCCAG	chr1:26607099-26607377(+)$1	278	66	97	23.0280
UGUGCGCGCUUGGAGCGUGUUAGGCGAGUGC	chr1:109642865-109643069(+)$1	204	57	88	25.4316
GACAGUAGUAUCUUAUUGGAUUCUGAUAAUA	chr18:210248-210515(+)$1	267	7	38	23.2081
uggcagcucauauauacuaagaucgagauga	chr4:169607662-169607879(-)$1	217	22	53	17.2955
CUGGGGGGUGGGCUCAGUCUACACCACCUCC	chr1:15868644-15868901(+)$1	257	27	58	23.9136
UGCAGCUAAGGAACAAUGGAAAGAGCUGAAG	chr10:58119525-58119794(-)$1	269	193	224	19.8991
uuguguccucuugucugcuucuaagggcacc	chr19:5094046-5094344(+)$1	298	115	146	20.3220
AACUGUCUGUUGUUUCCAGGUCUCAGCUCGC	chr6:28117109-28117397(+)$1	288	132	163	23.9713
UUUGUUGGUGGCAUUAAAGAAGACACUGAAG	chr12:54675756-54675969(+)$1	213	159	190	22.5294
UCCCCGCAGGGCUGCCCUGAGAUCCUGCCCA	chrX:153693224-153693519(+)$1	295	127	158	22.4626
UCCAUGAUCCACCCCAACGUGCCGGCCAUCA	chr1:1685543-1685797(-)$1	254	206	237	19.5549
ACAGAACCUGAGGUUAUCACACUCCUGCUGU	chr1:228333461-228333731(+)$1	270	5	36	17.7941
GUUCUCAGUUCCGGCAAGUUCUACGGUGACG	chr19:13049787-13050042(+)$1	255	216	247	17.6819
CUGCGAAGGCGGUUGGAGGUGGCCCGCCCGC	chr19:572984-573258(+)$1	274	108	139	23.6550
UGAAUCUAAAGUUGAUUAUUACUACUUUAGC	chr1:76252719-76252923(+)$1	204	63	94	24.3065
GCUUCCGAUAUGGUAUCGACAUCCCGUAUCU	chr17:65353401-65353665(-)$1	264	118	149	17.4803
GUGCAGGAGGAGUCACCACCUUUUUUCCUCA	chr17:17717603-17717900(-)$1	297	59	90	23.9774
UAGUCAUGGUGCGAAAAGAAGGAUGCAGAAA	chr16:89034370-89034654(-)$1	284	217	248	24.6159
GGCCUAUUUUGGUAUGCUGUUUCCAGUAGCU	chr15:34652102-34652385(-)$1	283	133	164	17.8145
GCCCAGAAGCCCAAAGCAUCCAACAGGGGAC	chr16:89000731-89000973(-)$1	242	177	208	24.5181
AAAUCUGACAAGUUUCAUAAUACAUUUUGUC	chr12:133398797-133399059(-)$1	262	116	147	22.3365
CUGCUGCAGUUGUCUUUUUUUCUCAGCGUUU	chr16:85669023-85669283(+)$1	260	212	243	23.7722
GGAUAGACGUAUUAACUUAAUCUUAUGUUCA	chr6:160204963-160205244(-)$1	281	107	138	22.8992
UCUGGUUCUGUUAAUCUUGUUUUUCCGACUG	chr1:6257721-6257970(-)$1	249	82	113	22.7502

#DB
)))))).(((((..............)))))	chr9:136216199-136216426(+)$1	1	81	112	21.1401
.((((((..(((...........)))....)	chr19:51305477-51305683(-)$1	1	25	56	23.8493
(((.....((((............))))..)	chr12:112035937-112036175(-)$1	1	71	102	23.1618
(((((..(((((.............)).)))	chrX:47085865-47086120(+)$1	1	173	204	22.5871
((((.((.((.(...........).)).)).	chr11:6500088-6500353(-)$1	1	42	73	22.8123
((((..((((((...........))))))..	chr17:42398253-42398512(-)$1	1	160	191	23.2937
(.(((((..(((............)))..))	chr17:7480075-7480278(+)$1	1	14	45	24.2850
)))(((..((((...........))))..))	chr19:893482-893690(+)$1	1	70	101	23.9448
((((((((.(((...........))))))))	chr16:85651370-85651647(+)$1	1	194	225	24.1687
((((((.(((((............))))).)	chr16:88528032-88528275(+)$1	1	185	216	23.8647
((((((((.(((............)))...)	chr17:79680146-79680417(+)$1	1	202	233	23.6986
...((((.((((..............)))).	chrX:153585004-153585261(-)$1	1	49	80	21.9228
)(((((((((((.............))))))	chr2:234197461-234197672(+)$1	1	117	148	24.7003
(((((((((..............))).))))	chr19:1408176-1408414(+)$1	1	122	153	19.3914
(.(((.((((((...........))))))..	chr19:15508576-15508825(-)$1	1	159	190	24.3740
)))))(((((((...........))))))).	chr17:8076709-8076924(-)$1	1	110	141	22.7403
)))...((((((.............))))))	chr11:88345883-88346101(-)$1	1	168	199	19.8961
.((.((.((.(............).))))))	chr17:29058877-29059130(+)$1	1	36	67	21.5712
((.((((.((((...........))))))))	chr1:31440908-31441124(-)$1	1	64	95	23.0007
((((((((((.(............).)))))	chr16:89039386-89039631(-)$1	1	167	198	25.3719
(((.((.(((((...........))).))..	chr16:89022891-89023149(-)$1	1	37	68	23.2295
....((.(((((............)))))))	chr16:88844172-88844408(-)$1	1	0	31	19.2846
((((((((.(((............)).).).	chr7:100272219-100272501(+)$1	1	69	100	22.4971
((((((((((((...........))))))))	chr16:88537259-88537497(+)$1	1	12	43	25.1590
..((((...(((...........))).))))	chr1:26607099-26607377(+)$1	1	66	97	23.0280
((((((((((((............)))))))	chr1:109642865-109643069(+)$1	1	57	88	25.4316
((.((((.((((............)))).))	chr18:210248-210515(+)$1	1	7	38	23.2081
((.((.(((...............))).)).	chr4:169607662-169607879(-)$1	1	22	53	17.2955
..(((((((((............))))))))	chr1:15868644-15868901(+)$1	1	27	58	23.9136
..(((((................)))))...	chr10:58119525-58119794(-)$1	1	193	224	19.8991
..(((((((..............)))))))(	chr19:5094046-5094344(+)$1	1	115	146	20.3220
(..(((..((((...........))))..))	chr6:28117109-28117397(+)$1	1	132	163	23.9713
(((.((((((.............)))))).)	chr12:54675756-54675969(+)$1	1	159	190	22.5294
(((((((.((((..............)))).	chrX:153693224-153693519(+)$1	1	127	158	22.4626
))((((((((.............))..))))	chr1:1685543-1685797(-)$1	1	206	237	19.5549
.(((.((...(((..........)))...))	chr1:228333461-228333731(+)$1	1	5	36	17.7941
.(((((.((((((..........))).))))	chr19:13049787-13050042(+)$1	1	216	247	17.6819
(.(((..(((((...........))))))))	chr19:572984-573258(+)$1	1	108	139	23.6550
((...(((((((...........))))))).	chr1:76252719-76252923(+)$1	1	63	94	24.3065
((..(.(((((((..........))))))).	chr17:65353401-65353665(-)$1	1	118	149	17.4803
((.(..((((((............)))))).	chr17:17717603-17717900(-)$1	1	59	90	23.9774
((((.....(((............)))....	chr16:89034370-89034654(-)$1	1	217	248	24.6159
(((.(((..(((..........)))))))))	chr15:34652102-34652385(-)$1	1	133	164	17.8145
.(((((...(((.............)))...	chr16:89000731-89000973(-)$1	1	177	208	24.5181
(.....((((((.............))))))	chr12:133398797-133399059(-)$1	1	116	147	22.3365
((.((...((((...........))))....	chr16:85669023-85669283(+)$1	1	212	243	23.7722
.....((((((............))))))..	chr6:160204963-160205244(-)$1	1	107	138	22.8992
((.((((..(((..............))).)	chr1:6257721-6257970(-)$1	1	82	113	22.7502

#PSSM
c : 0.16	e : 0.12	= : 0.10	b : 0.10	h : 0.08	: : 0.06	d : 0.06	[ : 0.06	$ : 0.06	f : 0.04	" : 0.02	C : 0.02	( : 0.02	# : 0.02	g : 0.02	H : 0.02	
c : 0.16	e : 0.14	= : 0.10	h : 0.08	b : 0.08	f : 0.06	[ : 0.06	$ : 0.06	d : 0.04	: : 0.04	" : 0.02	C : 0.02	( : 0.02	# : 0.02	! : 0.02	g : 0.02	H : 0.02	
c : 0.16	e : 0.14	[ : 0.12	= : 0.10	f : 0.10	d : 0.06	h : 0.06	" : 0.04	g : 0.04	! : 0.04	$ : 0.04	b : 0.02	: : 0.02	i : 0.02	
d : 0.14	c : 0.14	e : 0.12	= : 0.10	f : 0.08	[ : 0.08	$ : 0.06	h : 0.04	: : 0.04	b : 0.04	g : 0.04	i : 0.02	" : 0.02	! : 0.02	a : 0.02	
c : 0.12	d : 0.12	= : 0.10	f : 0.10	e : 0.10	b : 0.10	$ : 0.08	[ : 0.04	! : 0.04	h : 0.04	g : 0.04	: : 0.02	i : 0.02	" : 0.02	a : 0.02	
d : 0.12	= : 0.10	f : 0.10	b : 0.10	! : 0.08	e : 0.08	c : 0.08	g : 0.08	$ : 0.06	[ : 0.06	h : 0.04	: : 0.02	i : 0.02	" : 0.02	
f : 0.20	[ : 0.10	g : 0.10	! : 0.08	d : 0.08	= : 0.08	c : 0.06	" : 0.06	$ : 0.04	b : 0.04	e : 0.04	h : 0.04	: : 0.02	i : 0.02	
f : 0.18	! : 0.12	[ : 0.10	e : 0.08	c : 0.08	= : 0.08	g : 0.08	" : 0.08	$ : 0.04	b : 0.04	h : 0.02	a : 0.02	i : 0.02	y : 0.02	
d : 0.16	f : 0.14	e : 0.08	! : 0.08	c : 0.08	b : 0.08	= : 0.08	g : 0.08	[ : 0.06	" : 0.06	i : 0.02	y : 0.02	$ : 0.02	
c : 0.25	d : 0.16	f : 0.14	e : 0.08	= : 0.08	g : 0.06	b : 0.04	w : 0.04	[ : 0.02	a : 0.02	x : 0.02	i : 0.02	y : 0.02	" : 0.02	
c : 0.25	d : 0.16	f : 0.12	e : 0.08	= : 0.06	g : 0.06	b : 0.04	[ : 0.04	w : 0.04	v : 0.04	a : 0.02	x : 0.02	i : 0.02	y : 0.02	
c : 0.25	d : 0.16	f : 0.10	e : 0.08	= : 0.06	g : 0.06	u : 0.06	b : 0.04	a : 0.04	w : 0.04	v : 0.04	x : 0.02	y : 0.02	
t : 0.31	u : 0.29	v : 0.14	w : 0.12	c : 0.04	x : 0.02	y : 0.02	g : 0.02	s : 0.02	
t : 0.31	u : 0.29	v : 0.14	w : 0.12	s : 0.08	x : 0.02	y : 0.02	
t : 0.31	u : 0.29	v : 0.14	w : 0.12	s : 0.08	x : 0.02	y : 0.02	
t : 0.31	u : 0.29	v : 0.14	w : 0.12	s : 0.08	x : 0.02	y : 0.02	
t : 0.31	u : 0.29	v : 0.14	w : 0.12	s : 0.08	x : 0.02	y : 0.02	
t : 0.31	u : 0.29	v : 0.14	w : 0.12	s : 0.08	x : 0.02	y : 0.02	
t : 0.31	u : 0.29	v : 0.14	w : 0.12	s : 0.08	x : 0.02	y : 0.02	
t : 0.31	u : 0.29	v : 0.14	w : 0.12	s : 0.08	x : 0.02	y : 0.02	
t : 0.31	u : 0.29	v : 0.14	w : 0.12	s : 0.08	x : 0.02	y : 0.02	
t : 0.31	u : 0.29	v : 0.14	w : 0.12	s : 0.08	x : 0.02	y : 0.02	
t : 0.31	u : 0.29	v : 0.14	w : 0.12	s : 0.06	x : 0.02	y : 0.02	c : 0.02	
u : 0.22	c : 0.16	v : 0.10	w : 0.08	f : 0.08	d : 0.08	g : 0.08	a : 0.04	e : 0.04	= : 0.02	x : 0.02	i : 0.02	b : 0.02	
c : 0.25	d : 0.12	v : 0.10	f : 0.10	w : 0.08	e : 0.08	g : 0.08	] : 0.04	b : 0.04	= : 0.04	a : 0.02	i : 0.02	
c : 0.27	f : 0.14	d : 0.12	w : 0.08	b : 0.08	e : 0.08	g : 0.08	= : 0.06	] : 0.02	i : 0.02	2 : 0.02	
d : 0.16	f : 0.16	c : 0.14	e : 0.10	] : 0.10	= : 0.08	g : 0.08	b : 0.06	4 : 0.02	i : 0.02	2 : 0.02	3 : 0.02	
f : 0.18	d : 0.14	e : 0.10	= : 0.08	g : 0.08	c : 0.08	4 : 0.06	] : 0.06	2 : 0.06	3 : 0.04	b : 0.04	a : 0.02	i : 0.02	
f : 0.20	d : 0.10	2 : 0.08	c : 0.08	b : 0.08	3 : 0.08	= : 0.08	g : 0.08	e : 0.06	4 : 0.06	] : 0.04	i : 0.02	
f : 0.12	d : 0.12	c : 0.10	b : 0.10	3 : 0.10	= : 0.08	g : 0.08	4 : 0.06	2 : 0.06	] : 0.06	e : 0.04	a : 0.02	i : 0.02	
c : 0.14	3 : 0.14	f : 0.12	d : 0.12	2 : 0.08	= : 0.08	e : 0.06	] : 0.06	b : 0.06	4 : 0.04	h : 0.02	: : 0.02	i : 0.02	

#score	1075.165468083956
#seq	48
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_transcript_m1_run2.txt

#BEAR
:============[cccmmmmccc============	chr2:63821519-63821775(+)$1	256	45	81	14.1289
e[cccbb[a[cccbboooooobb]ccc]a]bb333c	chr8:142422428-142422675(+)$1	247	68	104	15.7628
[a!!eeeee!!a[bboooooobb]a22eeeee22a]	chr12:49351013-49351329(-)$1	316	79	115	15.2559
cc"""==========oooooo==========333cc	chr16:81522815-81523086(+)$1	271	232	268	20.6325
[bb[gggggggddddoooooodddd]ggggggg22b	chr16:70601287-70601528(+)$1	241	163	199	14.9691
eee[ggggggg[bb[aooooooa]bb]gggggggee	chr19:954746-954982(+)$1	236	163	199	14.3831
ccc!!a[bb!!cccrrrrrrrrrccc22bb]a333c	chr17:75211253-75211535(+)$1	282	11	47	12.1097
eeee####a[bb[bboooooobb]bb]a4444eeee	chr7:72861492-72861719(-)$1	227	100	136	14.9377
bb!!ccc!!ggggggglllggggggg333ccc333b	chr17:4843821-4844115(+)$1	294	18	54	13.0025
dddcccccc!!bbbboooooobb]bb22ccc]ccc]	chr16:70076153-70076389(-)$1	236	114	150	14.7506
[==============mmmm==============]bb	chr2:153532960-153533239(-)$1	279	39	75	15.7199
:==============oooooo==============:	chr22:48977391-48977642(+)$1	251	28	64	18.6187
dddd####gggggggooooooggggggg333dddd]	chrX:153236504-153236764(-)$1	260	70	106	16.0687
c==========!!aooooooa]==========22cc	chr22:48982147-48982465(+)$1	318	227	263	18.6592
dddd"""ccc[ddddoooooodddd22ccc4444dd	chr18:7888005-7888268(+)$1	263	40	76	15.5973
bb[ccc[ccc[a[bboooooobb22a]cccccc]bb	chrX:20284756-20285018(-)$1	262	182	218	15.6337
gggggg!!dddd[bboooooobbdddd]ggggggge	chr17:79958092-79958377(+)$1	285	61	97	14.3832
ccc[===========oooooo===========22cc	chr16:89363898-89364130(-)$1	232	21	57	20.0134
"""ffffff!!ddddoooooodddd]ffffff22dd	chr8:9629762-9630032(+)$1	270	81	117	13.7572
iiiiiiiiibbrrrrrrrrrbb]iiiiiiiii333d	chr2:231729570-231729844(+)$1	274	6	42	11.9842
Jccc!!ccc[ccc[aooooooa]cccccc22cccee	chr4:151765152-151765398(-)$1	246	34	70	14.5163
:===========[bbmmmmbb]===========:gg	chr11:637282-637542(+)$1	260	129	165	12.5782
:ccc[==========oooooo==========ccc::	chr9:79934429-79934687(+)$1	258	198	234	16.7626
e####ffffff[cccoooooocccffffffeeeee:	chr15:28436187-28436435(-)$1	248	116	152	13.0668
cc!!a[eeeee[cccooooooccc]eeeee]a22cc	chr5:76987060-76987334(-)$1	274	149	185	15.2552
:==============oooooo==============:	chr22:48977210-48977518(+)$1	308	209	245	18.6187
[dddd[ccc!!ddddoooooodddd22ccc]dddd]	chr6:90438730-90438958(-)$1	228	133	169	14.1846
:ccc[dddd[eeeeeooooooeeeee]ddddccccc	chr2:209119561-209119837(-)$1	276	72	108	12.4544
ff[ccc!!gggggggoooooogggggggcccfffff	chr20:60628658-60628912(-)$1	254	44	80	15.5801
==a[============[a####=============[	chr17:70550346-70550601(-)$1	255	99	135	14.0569
cc==========[bbnnnnnbb]==========]cc	chr9:136848178-136848451(-)$1	273	159	195	15.2600
[ddddffffff[cccooooooccc333ffffff]dd	chr5:140699410-140699685(-)$1	275	227	263	14.4649
e:dddd!!gggggggooooooggggggg333dddd:	chr17:37618270-37618525(+)$1	255	81	117	13.9343
h"""bb[cccccc[cccmmmmccc]ccc]ccc22bb	chr12:123054127-123054404(+)$1	277	178	214	10.8793
E============bboooooobb4444=========	chr6:32948858-32949149(+)$1	291	13	49	18.3438
ff[a[ccc!!ccc[aooooooa]ccc22ccc]a]ff	chr11:63953576-63953843(+)$1	267	214	250	15.8944
dddd"""ccc[ddddoooooodddd]cccdddd]ff	chr5:102455923-102456269(+)$1	346	66	102	14.1924
[a####iiiiiiiiiooooooiiiiiiiii55555a	chr17:163994-164340(-)$1	346	169	205	15.0803
iiiiibb[gggggggooooooggggggg333bb]ii	chr16:18840850-18841114(-)$1	264	148	184	16.5201
hhh!!cccgggggggooooooggggggg333ccc33	chr2:32668535-32668755(+)$1	220	149	185	16.5028
d"""dddd!!bb!!aooooooa]bb22dddd333dd	chr17:166801-167083(-)$1	282	97	133	14.6087
bbccc"""ccc"""cccmmmmccc333ccc4444cc	chr16:2155763-2155998(-)$1	235	154	190	12.7498
!aaccc[ffffffbboooooobb]ffffff333ccc	chr9:134357662-134357932(+)$1	270	216	252	15.3091
ee:::==========oooooo===============	chr3:184045561-184045873(+)$1	312	161	197	16.2614
========="""cccpppppppccc333========	chr2:27458014-27458243(+)$1	229	180	216	12.4825
dddccc[bb[eeeeeooooooeeeee]bb]cccggg	chr12:123998097-123998362(-)$1	265	196	232	13.5354
=============bboooooobb22===========	chr1:179923940-179924305(+)$1	365	129	165	18.9144
d===========ddddmmmmdddd4444========	chr2:209119637-209119894(-)$1	257	159	195	13.2023
!!ccc"""gggggggooooooggggggg55555ccc	chr6:170706986-170707239(+)$1	253	186	222	13.6264
======ccccccbb[aooooooabb]ccc]cccddd	chr1:2199016-2199238(+)$1	222	87	123	14.4902

#otherMatches

#Seq PSSM
GGAUAUUUUUAAGGUACAGUAGUACUUAAAGAUGUU	chr2:63821519-63821775(+)$1	256	45	81	14.1289
AACUCCUGUUCCCGUGAAGGUGCUGGGUGGGGUGUG	chr8:142422428-142422675(+)$1	247	68	104	15.7628
GCGGCUUCCGGUGCUAGGUGGAGGGAAGGAAGGAGG	chr12:49351013-49351329(-)$1	316	79	115	15.2559
GUACAUCACUUGGGUGCAGGGGCUUGGGUGAGAGAC	chr16:81522815-81523086(+)$1	271	232	268	20.6325
GGCAUUGGUGCUGAGAUCUAGCUCAUGUGUCAAGGG	chr16:70601287-70601528(+)$1	241	163	199	14.9691
GGUCAGGCGGCGUGGAGGGGAGUGCGGGCCGCUUAU	chr19:954746-954982(+)$1	236	163	199	14.3831
AAUAUGGGAUUUGUUUGCCUUUUACAUUUUGUUUAA	chr17:75211253-75211535(+)$1	282	11	47	12.1097
agaUUAUGAGGUGGCUGGUUUGCGAUGUAAGUAUUU	chr7:72861492-72861719(-)$1	227	100	136	14.9377
GGAAGCCCUUUUCCAGAGGCUGGGAACACGGCCCAC	chr17:4843821-4844115(+)$1	294	18	54	13.0025
UUCCAGGCCCACUCCAGGGCAGGUAGGUGGCACUGA	chr16:70076153-70076389(-)$1	236	114	150	14.7506
AGCUGCUGUUGUUgcagcagcagcagcggcagcagc	chr2:153532960-153533239(-)$1	279	39	75	15.7199
AGCCCCUGGGCCUGGAGAAGGCCGGGUUCGGGGGCA	chr22:48977391-48977642(+)$1	251	28	64	18.6187
GGCCGGGGCUCCGCCAUUUCCGGCGGGGGAGGGCUA	chrX:153236504-153236764(-)$1	260	70	106	16.0687
CGUGUCUGUGGAGCAGAUGAGGCCACAGGCACUGGC	chr22:48982147-48982465(+)$1	318	227	263	18.6592
AGAGAUAACCAGAAAGUAGUGUUUCAGGGUAUGACU	chr18:7888005-7888268(+)$1	263	40	76	15.5973
UGGGGCUCgggcggcgacggagcggggccggccgug	chrX:20284756-20285018(-)$1	262	182	218	15.6337
AGUGCCCGCCCGUGCUCGCCCGUCGGGAGGCGCUGU	chr17:79958092-79958377(+)$1	285	61	97	14.3832
GGCCCAGGACAGGCUGUUCGGAGCUUGUCUUGCUGC	chr16:89363898-89364130(-)$1	232	21	57	20.0134
aaugagggacagauaggcuuauauuaucucucuagg	chr8:9629762-9630032(+)$1	270	81	117	13.7572
ggcccucccgcggggacggggcggggAGGGCUGGGG	chr2:231729570-231729844(+)$1	274	6	42	11.9842
aauaGAGCCCAGUGGACAUUGUGACUGGCGGUAUAU	chr4:151765152-151765398(-)$1	246	34	70	14.5163
GGCGCUGGUGGGGGGCGUGCUGCUCAUCGGCGCGGU	chr11:637282-637542(+)$1	260	129	165	12.5782
auguauuuuaaaagacuuuauuuuuuuaagaacaga	chr9:79934429-79934687(+)$1	258	198	234	16.7626
CAGUAGCUACAUGCCGUCCCUGGUUGUAGUGUCAGG	chr15:28436187-28436435(-)$1	248	116	152	13.0668
AUUAUUUUUGACCACUGCUAUGUGUUCAAGUAGUAU	chr5:76987060-76987334(-)$1	274	149	185	15.2552
AGCCCCUGGGCCUGGAGAAGGCCGGGUUCGGGGGCA	chr22:48977210-48977518(+)$1	308	209	245	18.6187
AUGCACUCAGUGCAGGGACCACUGCUAUGAAUGCAC	chr6:90438730-90438958(-)$1	228	133	169	14.1846
AGGCACUGGGAGUCCGGUUUGGGAUUGCCAGGCUGU	chr2:209119561-209119837(-)$1	276	72	108	12.4544
GGUCAUUGUCUGUGUCUGUCUGCACAGAGUGCUGGG	chr20:60628658-60628912(-)$1	254	44	80	15.5801
ccagguguuugagcauguggaugggugcacgugugg	chr17:70550346-70550601(-)$1	255	99	135	14.0569
UGGUGGGGCCAGUGUGGAAGACCCUGGCUUUAUGCA	chr9:136848178-136848451(-)$1	273	159	195	15.2600
CGUCAUGGAAUCGUCAGAGUGGACCGUGUUCCAUUG	chr5:140699410-140699685(-)$1	275	227	263	14.4649
AAGAAGGACGGGAGUGGAGGAGCUUCUGGAACUUUG	chr17:37618270-37618525(+)$1	255	81	117	13.9343
AAGCUGUGUCCAUGGUUUAAAAAUGAUGUGAUUCCA	chr12:123054127-123054404(+)$1	277	178	214	10.8793
AAGGCUGGGGGGAGGGUGGGGCCGUGGUCCCCUCAG	chr6:32948858-32949149(+)$1	291	13	49	18.3438
cgguggccaggccgcgguaggggggcggggcgggcg	chr11:63953576-63953843(+)$1	267	214	250	15.8944
GGAGAUUCCUGAGGUGUAGUAGCCUGAGGUUCCCUU	chr5:102455923-102456269(+)$1	346	66	102	14.1924
GCAGGACUCGGGCAGUGACUCCUGCCUGGGAGAACG	chr17:163994-164340(-)$1	346	169	205	15.0803
UCAAGGCAUUCACAGCUGACUUUGUGAGGCAGCUCU	chr16:18840850-18841114(-)$1	264	148	184	16.5201
GUUAUAGUCAUAUGGAACAUCUCAUAUGUAUACUUA	chr2:32668535-32668755(+)$1	220	149	185	16.5028
UACAGGUCAAUGGAGGUGGAGCACAGGGACUAAAGG	chr17:166801-167083(-)$1	282	97	133	14.6087
ACGUCACAUCUGCUGCAUGCGUGCUUGGGACCAAGA	chr16:2155763-2155998(-)$1	235	154	190	12.7498
GCGGGCCCGGCCUGGCGGAACCCAAGGCCGACAGCC	chr9:134357662-134357932(+)$1	270	216	252	15.3091
CAUAUGGGGCAGCUGCUGCACCAGCUGCUCUGUGCU	chr3:184045561-184045873(+)$1	312	161	197	16.2614
GCUUUGGGGAGAGCCGCUGUGAGGCAUACCUCAAGG	chr2:27458014-27458243(+)$1	229	180	216	12.4825
GUUGUGAGCACUUCACAUCGAUGAAGCGUGCACAGG	chr12:123998097-123998362(-)$1	265	196	232	13.5354
GGGAGGGGAGGCAGCCUUUCCGCCUUGUCUUCCUUC	chr1:179923940-179924305(+)$1	365	129	165	18.9144
GGCUGUGGUUGUGAGUCUGAGCUUGUGAGCGGCUGU	chr2:209119637-209119894(-)$1	257	159	195	13.2023
GUUCUGCAGACAGGUGUGCCUGCCUGUCACAGAGGA	chr6:170706986-170707239(+)$1	253	186	222	13.6264
GCGGGGGGCGCACCACACUUCAGGGAUGCAGCCGGC	chr1:2199016-2199238(+)$1	222	87	123	14.4902

#DB
.((((((((((((.(((....)))))))))))))))	chr2:63821519-63821775(+)$1	1	45	81	14.1289
(.(((((.(.(((((......)).))).).))...)	chr8:142422428-142422675(+)$1	1	68	104	15.7628
.(..(((((..(.((......)).)..)))))..).	chr12:49351013-49351329(-)$1	1	79	115	15.2559
((...((((((((((......))))))))))...))	chr16:81522815-81523086(+)$1	1	232	268	20.6325
.((.(((((((((((......)))).)))))))..)	chr16:70601287-70601528(+)$1	1	163	199	14.9691
(((.(((((((.((.(......).)).)))))))))	chr19:954746-954982(+)$1	1	163	199	14.3831
(((..(.((..(((.........)))..)).)...)	chr17:75211253-75211535(+)$1	1	11	47	12.1097
((((....(.((.((......)).)).)....))))	chr7:72861492-72861719(-)$1	1	100	136	14.9377
((..(((..(((((((...)))))))...)))...)	chr17:4843821-4844115(+)$1	1	18	54	13.0025
(((((((((..((((......)).))..))).))).	chr16:70076153-70076389(-)$1	1	114	150	14.7506
.((((((((((((((....)))))))))))))).))	chr2:153532960-153533239(-)$1	1	39	75	15.7199
.((((((((((((((......)))))))))))))).	chr22:48977391-48977642(+)$1	1	28	64	18.6187
((((....(((((((......)))))))...)))).	chrX:153236504-153236764(-)$1	1	70	106	16.0687
(((((((((((..(......).))))))))))..))	chr22:48982147-48982465(+)$1	1	227	263	18.6592
((((...(((.((((......))))..)))....))	chr18:7888005-7888268(+)$1	1	40	76	15.5973
((.(((.(((.(.((......))..).)))))).))	chrX:20284756-20285018(-)$1	1	182	218	15.6337
((((((..((((.((......)))))).))))))))	chr17:79958092-79958377(+)$1	1	61	97	14.3832
(((.(((((((((((......)))))))))))..))	chr16:89363898-89364130(-)$1	1	21	57	20.0134
...((((((..((((......)))).))))))..))	chr8:9629762-9630032(+)$1	1	81	117	13.7572
(((((((((((.........)).)))))))))...)	chr2:231729570-231729844(+)$1	1	6	42	11.9842
((((..(((.(((.(......).))))))..)))((	chr4:151765152-151765398(-)$1	1	34	70	14.5163
.(((((((((((.((....)).))))))))))).((	chr11:637282-637542(+)$1	1	129	165	12.5782
.(((.((((((((((......)))))))))))))..	chr9:79934429-79934687(+)$1	1	198	234	16.7626
(....((((((.(((......)))))))))))))).	chr15:28436187-28436435(-)$1	1	116	152	13.0668
((..(.(((((.(((......))).))))).)..))	chr5:76987060-76987334(-)$1	1	149	185	15.2552
.((((((((((((((......)))))))))))))).	chr22:48977210-48977518(+)$1	1	209	245	18.6187
.((((.(((..((((......))))..))).)))).	chr6:90438730-90438958(-)$1	1	133	169	14.1846
.(((.((((.(((((......))))).)))))))((	chr2:209119561-209119837(-)$1	1	72	108	12.4544
((.(((..(((((((......)))))))))))))))	chr20:60628658-60628912(-)$1	1	44	80	15.5801
(((.((((((((((((.(....(((((((((((((.	chr17:70550346-70550601(-)$1	1	99	135	14.0569
((((((((((((.((.....)).)))))))))).))	chr9:136848178-136848451(-)$1	1	159	195	15.2600
.((((((((((.(((......)))...)))))).))	chr5:140699410-140699685(-)$1	1	227	263	14.4649
).((((..(((((((......)))))))...)))).	chr17:37618270-37618525(+)$1	1	81	117	13.9343
(...((.((((((.(((....))).))).)))..))	chr12:123054127-123054404(+)$1	1	178	214	10.8793
(((((((((((((((......))....)))))))))	chr6:32948858-32949149(+)$1	1	13	49	18.3438
((.(.(((..(((.(......).)))..))).).))	chr11:63953576-63953843(+)$1	1	214	250	15.8944
((((...(((.((((......)))).))))))).))	chr5:102455923-102456269(+)$1	1	66	102	14.1924
.(....(((((((((......))))))))).....)	chr17:163994-164340(-)$1	1	169	205	15.0803
(((((((.(((((((......)))))))...)).))	chr16:18840850-18841114(-)$1	1	148	184	16.5201
(((..((((((((((......)))))))...)))..	chr2:32668535-32668755(+)$1	1	149	185	16.5028
(...((((..((..(......).))..))))...))	chr17:166801-167083(-)$1	1	97	133	14.6087
(((((...(((...(((....)))...)))....))	chr16:2155763-2155998(-)$1	1	154	190	12.7498
.(((((.((((((((......)).))))))...)))	chr9:134357662-134357932(+)$1	1	216	252	15.3091
))...((((((((((......))))))))))(((((	chr3:184045561-184045873(+)$1	1	161	197	16.2614
(((((((((...(((.......)))...))))))))	chr2:27458014-27458243(+)$1	1	180	216	12.4825
)))(((.((.(((((......))))).)).)))(((	chr12:123998097-123998362(-)$1	1	196	232	13.5354
(((((((((((((((......))..)))))))))))	chr1:179923940-179924305(+)$1	1	129	165	18.9144
)(((((((((((((((....))))....))))))))	chr2:209119637-209119894(-)$1	1	159	195	13.2023
..(((...(((((((......))))))).....)))	chr6:170706986-170707239(+)$1	1	186	222	13.6264
))))))((((((((.(......))).))).)))(((	chr1:2199016-2199238(+)$1	1	87	123	14.4902

#PSSM
d : 0.14	: : 0.12	e : 0.12	[ : 0.12	c : 0.12	= : 0.08	b : 0.06	i : 0.04	f : 0.04	h : 0.04	! : 0.04	g : 0.02	" : 0.02	J : 0.02	E : 0.02	
= : 0.23	c : 0.16	d : 0.14	b : 0.08	a : 0.06	e : 0.06	" : 0.06	i : 0.04	f : 0.04	[ : 0.02	g : 0.02	# : 0.02	: : 0.02	h : 0.02	! : 0.02	
= : 0.23	c : 0.16	d : 0.16	" : 0.08	! : 0.06	[ : 0.06	e : 0.04	i : 0.04	# : 0.04	a : 0.04	b : 0.02	g : 0.02	h : 0.02	: : 0.02	
= : 0.23	c : 0.21	d : 0.12	! : 0.10	[ : 0.08	" : 0.06	i : 0.04	# : 0.04	e : 0.02	g : 0.02	f : 0.02	a : 0.02	: : 0.02	
= : 0.27	c : 0.18	# : 0.08	d : 0.08	" : 0.06	g : 0.06	! : 0.06	[ : 0.06	i : 0.04	e : 0.02	f : 0.02	a : 0.02	b : 0.02	: : 0.02	
= : 0.34	c : 0.16	" : 0.08	b : 0.06	g : 0.06	# : 0.06	f : 0.06	d : 0.06	[ : 0.04	e : 0.02	a : 0.02	i : 0.02	! : 0.02	
= : 0.32	c : 0.14	[ : 0.10	" : 0.08	! : 0.06	f : 0.06	b : 0.04	e : 0.04	g : 0.04	# : 0.04	i : 0.04	d : 0.04	
= : 0.32	c : 0.19	! : 0.08	f : 0.08	[ : 0.04	e : 0.04	g : 0.04	b : 0.04	# : 0.04	i : 0.04	d : 0.04	" : 0.04	
= : 0.32	c : 0.18	g : 0.16	f : 0.08	! : 0.06	a : 0.04	e : 0.04	b : 0.04	d : 0.04	i : 0.04	
= : 0.30	g : 0.18	! : 0.14	c : 0.12	[ : 0.10	f : 0.06	d : 0.02	b : 0.02	e : 0.02	i : 0.02	" : 0.02	
= : 0.30	g : 0.18	c : 0.12	! : 0.10	b : 0.06	[ : 0.06	f : 0.06	e : 0.06	d : 0.02	i : 0.02	" : 0.02	
= : 0.27	g : 0.14	c : 0.12	d : 0.12	[ : 0.08	b : 0.06	a : 0.04	e : 0.04	" : 0.04	! : 0.02	r : 0.02	i : 0.02	f : 0.02	
= : 0.21	c : 0.18	g : 0.14	[ : 0.12	d : 0.12	b : 0.06	! : 0.04	e : 0.04	r : 0.02	i : 0.02	" : 0.02	f : 0.02	
b : 0.25	= : 0.16	g : 0.14	d : 0.12	c : 0.10	[ : 0.08	e : 0.04	a : 0.02	r : 0.02	i : 0.02	! : 0.02	" : 0.02	
b : 0.21	= : 0.16	c : 0.14	g : 0.14	d : 0.12	a : 0.06	[ : 0.04	r : 0.04	e : 0.04	o : 0.02	i : 0.02	
o : 0.72	c : 0.06	a : 0.04	r : 0.04	m : 0.04	g : 0.02	= : 0.02	n : 0.02	p : 0.02	d : 0.02	
o : 0.76	c : 0.06	m : 0.06	r : 0.04	l : 0.02	[ : 0.02	n : 0.02	p : 0.02	
o : 0.76	m : 0.12	r : 0.04	l : 0.02	a : 0.02	n : 0.02	p : 0.02	
o : 0.76	m : 0.12	r : 0.04	l : 0.02	# : 0.02	n : 0.02	p : 0.02	
o : 0.76	m : 0.08	r : 0.04	g : 0.02	= : 0.02	b : 0.02	# : 0.02	n : 0.02	p : 0.02	
o : 0.74	m : 0.06	b : 0.06	r : 0.02	g : 0.02	= : 0.02	a : 0.02	# : 0.02	p : 0.02	d : 0.02	
b : 0.21	= : 0.14	g : 0.14	c : 0.12	d : 0.12	a : 0.06	o : 0.04	] : 0.04	e : 0.04	r : 0.02	# : 0.02	i : 0.02	p : 0.02	
= : 0.19	b : 0.18	c : 0.14	g : 0.14	d : 0.12	] : 0.10	a : 0.04	e : 0.04	r : 0.02	i : 0.02	
= : 0.21	c : 0.19	d : 0.14	g : 0.14	] : 0.12	2 : 0.04	i : 0.04	e : 0.04	b : 0.04	4 : 0.02	
= : 0.23	g : 0.14	d : 0.12	c : 0.10	b : 0.10	2 : 0.04	i : 0.04	f : 0.04	] : 0.04	e : 0.04	3 : 0.04	4 : 0.04	a : 0.02	
= : 0.25	g : 0.14	c : 0.10	2 : 0.08	] : 0.08	b : 0.06	e : 0.06	3 : 0.06	i : 0.04	f : 0.04	4 : 0.04	a : 0.02	d : 0.02	
= : 0.25	2 : 0.14	g : 0.14	c : 0.10	] : 0.10	3 : 0.08	f : 0.06	i : 0.04	4 : 0.04	d : 0.02	e : 0.02	
= : 0.27	g : 0.16	c : 0.16	f : 0.08	2 : 0.06	] : 0.04	e : 0.04	3 : 0.04	i : 0.04	d : 0.04	a : 0.02	b : 0.02	4 : 0.02	
= : 0.32	c : 0.19	3 : 0.10	f : 0.08	g : 0.06	e : 0.04	b : 0.04	i : 0.04	d : 0.04	a : 0.02	4 : 0.02	] : 0.02	5 : 0.02	
= : 0.32	c : 0.18	3 : 0.08	f : 0.08	] : 0.06	g : 0.06	d : 0.06	e : 0.04	i : 0.04	b : 0.02	4 : 0.02	2 : 0.02	5 : 0.02	
= : 0.32	c : 0.16	3 : 0.10	g : 0.06	] : 0.06	4 : 0.06	d : 0.06	e : 0.04	f : 0.04	5 : 0.04	b : 0.02	i : 0.02	2 : 0.02	
= : 0.27	c : 0.18	d : 0.08	3 : 0.06	g : 0.06	4 : 0.06	f : 0.06	b : 0.04	e : 0.04	a : 0.04	] : 0.04	5 : 0.04	i : 0.02	
= : 0.23	c : 0.16	3 : 0.14	2 : 0.12	d : 0.08	g : 0.06	e : 0.04	4 : 0.04	f : 0.04	5 : 0.04	a : 0.02	b : 0.02	
= : 0.18	2 : 0.14	c : 0.14	] : 0.14	3 : 0.12	d : 0.08	g : 0.06	e : 0.04	4 : 0.04	: : 0.02	f : 0.02	5 : 0.02	
c : 0.19	= : 0.18	d : 0.16	3 : 0.10	e : 0.08	b : 0.06	g : 0.06	f : 0.06	a : 0.02	2 : 0.02	: : 0.02	5 : 0.02	i : 0.02	
c : 0.21	= : 0.12	d : 0.12	b : 0.10	: : 0.10	] : 0.08	e : 0.08	f : 0.06	g : 0.04	[ : 0.02	a : 0.02	i : 0.02	3 : 0.02	

#score	753.697050052974
#seq	50
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_CDS_m3_run1.txt

#BEAR
:eeeee[cccmmmmccc]eeeee	chr10:102822464-102822707(+)$1	243	205	228	9.0492
eeedddd[bbmmmmbb]dddd55	chr2:242707145-242707414(+)$1	269	152	175	10.5671
e[dddd[cccmmmmccc]dddde	chr16:4431609-4431876(-)$1	267	4	27	9.4516
eeeee!!cccmmmmccc22eeee	chr7:228289-228563(+)$1	274	62	85	10.0825
eeeee"""bbmmmmbb]eeeee:	chr17:38498926-38499175(+)$1	249	66	89	11.8558
[ccc[bb[bbmmmmbb]bb]ccc	chr2:232575239-232575500(+)$1	261	185	208	12.4658
ffffff!!bbmmmmbb22fffff	chr22:42525212-42525544(+)$1	332	169	192	11.5523
""dddd[cccmmmmccc]dddd2	chr21:46929119-46929371(-)$1	252	125	148	9.4570
e[eeeeecccmmmmccc4444ee	chr16:725727-726021(+)$1	294	23	46	9.9308
eeee[bb[ammmmabb]eeeee]	chr19:1468754-1469010(-)$1	256	208	231	10.2356
[cccccc[bbmmmmbb]ccc]cc	chr19:56599440-56599675(-)$1	235	35	58	12.6911
eeeeccc[bbmmmmbb]ccc]ee	chr19:47778371-47778591(+)$1	220	134	157	12.8255
[cccccc[bbmmmmbb]ccc]cc	chr19:56599527-56599789(-)$1	262	149	172	12.6911
eeee[bb[bbmmmmbb]bb]eee	chr6:48036284-48036526(-)$1	242	175	198	12.7020
""eeeee!!bblllbb22eeeee	chr9:132382166-132382447(+)$1	281	219	242	9.6686
ccceeeeebbmmmmbb]eeeee2	chr17:48545494-48545731(+)$1	237	134	157	11.7691
fffffa!!bbmmmmbb22a]fff	chr16:1433713-1433970(-)$1	257	157	180	12.0656
!!eeeee[bbmmmmbbeeeee22	chr14:103576291-103576532(+)$1	241	136	159	11.8250
fffff"""bbmmmmbb]ffffff	chr19:49843012-49843263(-)$1	251	131	154	11.6888
eeee[bb[bbmmmmbb]bb]eee	chr14:23991188-23991485(+)$1	297	65	88	12.7020
gggggg[cccmmmmcccgggggg	chr11:63883990-63884230(-)$1	240	6	29	9.3477
[ccc####bbmmmmbb333ccc2	chr8:145754278-145754567(-)$1	289	113	136	12.8400
e[aa[a[cccmmmmccc]a]a]a	chr17:75471689-75471959(+)$1	270	111	134	10.1595
gggg[bb[bbmmmmbb]bbgggg	chr9:38620172-38620504(-)$1	332	198	221	12.1557
dccc"""cccmmmmccc333ccc	chr19:38876626-38876875(+)$1	249	99	122	9.9308
eccc[a[a[bblllbb]a]a]cc	chr12:132402927-132403160(+)$1	233	64	87	9.9169
eeee[ccc[bblllbb]ccc333	chr1:976415-976662(+)$1	247	101	124	9.9669
a[bb[bb[bbmmmmbb]bb]bb]	chr16:431662-431925(-)$1	263	237	260	11.4402
cceeeee!!ammmma22eeeee2	chr16:725994-726279(+)$1	285	148	171	9.7645
eeeeee[cccmmmmccc22eeee	chr14:24002558-24002839(+)$1	281	115	138	9.9827
c!!ccc!!bbmmmmbb22ccc22	chr16:2580661-2580906(+)$1	245	34	57	12.4479
fffff!!cccmmmmccc22ffff	chr11:1983456-1983699(+)$1	243	216	239	9.0929
:ddddcccbbmmmmbb]ccc]dd	chr11:57243950-57244207(-)$1	257	17	40	10.6898
::eeeee[bbmmmmbb333eeee	chr1:36788407-36788689(+)$1	282	19	42	11.0073
&eeeee[cccmmmmccceeeeeg	chr12:62996869-62997141(+)$1	272	13	36	9.1475
d[ffffffbbmmmmbb]ffffff	chr19:577881-578125(+)$1	244	178	201	10.9468
"""dddd[bbmmmmbb]dddd33	chr5:154135275-154135541(+)$1	266	183	206	12.3676
ccc!!bb[bbmmmmbb]bb22cc	chr19:47731493-47731821(-)$1	328	263	286	11.6871
eeee[bb!!ammmma22bb]eee	chr17:79875862-79876133(-)$1	271	189	212	9.9317
c[ccc!!cccmmmmccc22ccc]	chr19:1032588-1032840(+)$1	252	86	109	9.9737
[a[dddd[bbmmmmbbdddd]ad	chr11:66626359-66626599(-)$1	240	187	210	11.2210
b[bb[bb[bbmmmmbb]bb]bb3	chr18:30350897-30351160(+)$1	263	22	45	11.2597
eea[ccc[bbmmmmbb]ccc]a]	chr19:56663010-56663268(+)$1	258	65	88	12.5760
cceeeeecccmmmmccc]eeeee	chr15:51386772-51387033(+)$1	261	66	89	9.5913
[a[ddddcccmmmmccc22dddd	chr5:176868668-176868891(-)$1	223	25	48	9.0263
eccc[a[a[bblllbb]a]a]cc	chr12:132402960-132403243(+)$1	283	31	54	9.9169
gg[dddd!!ammmma22dddd]g	chr21:46876313-46876572(+)$1	259	69	92	9.1921
eccc[a[a[bblllbb]a]a]cc	chr12:132402836-132403127(+)$1	291	155	178	9.9169
affffff[bbmmmmbb]ffffff	chr16:29817801-29818126(-)$1	325	297	320	11.4581
c[ccc####bblllbb]ccc]cc	chr21:46876599-46876866(+)$1	267	226	249	9.9126
eeee[cccbbmmmmbb333ccc]	chr6:43738643-43738866(+)$1	223	6	29	12.8532
b!!a[bb[bbmmmmbb]bb]a22	chr10:101379900-101380215(-)$1	315	74	97	12.0690
"""dddd[bbmmmmbb]dddd]d	chr17:75471535-75471763(+)$1	228	35	58	11.9301
"""dddd[bbmmmmbb]dddd33	chr5:154135341-154135595(+)$1	254	117	140	12.3676

#otherMatches

#Seq PSSM
GUGCCGGCUGGACACAGGCGGCG	chr10:102822464-102822707(+)$1	243	205	228	9.0492
GCCCUGCAGCUCAUGCAGCAGCU	chr2:242707145-242707414(+)$1	269	152	175	10.5671
GCGGGAAGUGGCAGCGCGUCUCC	chr16:4431609-4431876(-)$1	267	4	27	9.4516
UCACAGGGGCUCUUGUCAGUGUG	chr7:228289-228563(+)$1	274	62	85	10.0825
AAUCCCUUCCUAGUGGUGGAUUU	chr17:38498926-38499175(+)$1	249	66	89	11.8558
AGUUGGUGGCUCCGGCGGCAGGC	chr2:232575239-232575500(+)$1	261	185	208	12.4658
CCCUGACCGCCUUUGCACUCAGG	chr22:42525212-42525544(+)$1	332	169	192	11.5523
UGUCGGCGGGGGGACCCUCCGGG	chr21:46929119-46929371(-)$1	252	125	148	9.4570
gcggccgccgaccccggaccccg	chr16:725727-726021(+)$1	294	23	46	9.9308
GCUCGGGACUUUGGCUGGAGCCG	chr19:1468754-1469010(-)$1	256	208	231	10.2356
GCCCAGCACGGGGACGGGCUCGG	chr19:56599440-56599675(-)$1	235	35	58	12.6911
GCUGAGCCGCCGCCGCCGCUACA	chr19:47778371-47778591(+)$1	220	134	157	12.8255
GCCCAGCACGGGGACGGGCUCGG	chr19:56599527-56599789(-)$1	262	149	172	12.6911
UCUGGUGGAGGAUGCUGCGGCAG	chr6:48036284-48036526(-)$1	242	175	198	12.7020
GUGCAGGAACUCACGGAACCUGC	chr9:132382166-132382447(+)$1	281	219	242	9.6686
CGCGUUUUCCGACAGGUAGAGCC	chr17:48545494-48545731(+)$1	237	134	157	11.7691
UCCCUGCCUGGACACACUCUGGG	chr16:1433713-1433970(-)$1	257	157	180	12.0656
UCUCUUGCAGCACACUCAAGACC	chr14:103576291-103576532(+)$1	241	136	159	11.8250
AGGGCCAUGGGCAGCUUGCCCUG	chr19:49843012-49843263(-)$1	251	131	154	11.6888
CCACAGCAGCCGAGGCAGCAGUG	chr14:23991188-23991485(+)$1	297	65	88	12.7020
GAGUUGUCAUCCAGGUGCAGCUU	chr11:63883990-63884230(-)$1	240	6	29	9.3477
CCCCGAGGCCCGAGGGAGAGGGA	chr8:145754278-145754567(-)$1	289	113	136	12.8400
GGGCAAGGGCACCAGCUGUAGAU	chr17:75471689-75471959(+)$1	270	111	134	10.1595
GUGGGCGUCUGAGAAGUCGCCAC	chr9:38620172-38620504(-)$1	332	198	221	12.1557
UGGCGGAGGGGAGCCCCAAGGCC	chr19:38876626-38876875(+)$1	249	99	122	9.9308
CCACGGUGUCUGCUGGUCCUGGU	chr12:132402927-132403160(+)$1	233	64	87	9.9169
gggcggCCCGUCUGACCGGCAAA	chr1:976415-976662(+)$1	247	101	124	9.9669
CGCGGGCGCCAUcgggggcgugg	chr16:431662-431925(-)$1	263	237	260	11.4402
GGACUGGGACCCAGGCACCAGUG	chr16:725994-726279(+)$1	285	148	171	9.7645
GUGGGGGAGGAGGGCCUGGCCCC	chr14:24002558-24002839(+)$1	281	115	138	9.9827
GGGCCCCACCUGUUGGAAGGGAA	chr16:2580661-2580906(+)$1	245	34	57	12.4479
CAAGGCCAAGAAUUCUUCUCUUU	chr11:1983456-1983699(+)$1	243	216	239	9.0929
GCGAGUCUUCGGCAGGCAGAUCU	chr11:57243950-57244207(-)$1	257	17	40	10.6898
ACCCCUACUCGAAGGGCAUUAGG	chr1:36788407-36788689(+)$1	282	19	42	11.0073
AUCGGCGCCGAGAGCGGGCCGGC	chr12:62996869-62997141(+)$1	272	13	36	9.1475
CCUGACCCGGGCGCCCAGGGUCA	chr19:577881-578125(+)$1	244	178	201	10.9468
GAGCCGGACGGCAGCGCUCGGAG	chr5:154135275-154135541(+)$1	266	183	206	12.3676
UGgcugccgcccccgccgccccc	chr19:47731493-47731821(-)$1	328	263	286	11.6871
GAGGAGCAGCAGAGGGAGCGCCU	chr17:79875862-79876133(-)$1	271	189	212	9.9317
cuucucgcccuggcggggaaggu	chr19:1032588-1032840(+)$1	252	86	109	9.9737
ACCCUCGGCAGCAGUGCGAGCGG	chr11:66626359-66626599(-)$1	240	187	210	11.2210
CAGCAGUGGCAGCAGCGACGGCA	chr18:30350897-30351160(+)$1	263	22	45	11.2597
UCUGGUCUGUGGGAGCUGACGGU	chr19:56663010-56663268(+)$1	258	65	88	12.5760
GGGCGCUCGGGCAGCCGCGGCGC	chr15:51386772-51387033(+)$1	261	66	89	9.5913
UCACUGUGCAAAACUGUAAACGG	chr5:176868668-176868891(-)$1	223	25	48	9.0263
CCACGGUGUCUGCUGGUCCUGGU	chr12:132402960-132403243(+)$1	283	31	54	9.9169
GCCGGGUCUUGCUAAUAACUCUG	chr21:46876313-46876572(+)$1	259	69	92	9.1921
CCACGGUGUCUGCUGGUCCUGGU	chr12:132402836-132403127(+)$1	291	155	178	9.9169
gcgccgcggcgacggcggcggcg	chr16:29817801-29818126(-)$1	325	297	320	11.4581
UUCCUUUUUGCCUUGCCAGGUAA	chr21:46876599-46876866(+)$1	267	226	249	9.9126
CCGCGCGGGGGAAGCCGAGCCGA	chr6:43738643-43738866(+)$1	223	6	29	12.8532
cagugguggcagcggcggcggGG	chr10:101379900-101380215(-)$1	315	74	97	12.0690
CUGUUAGUUUAUAGGACCUGAAG	chr17:75471535-75471763(+)$1	228	35	58	11.9301
GAGCCGGACGGCAGCGCUCGGAG	chr5:154135341-154135595(+)$1	254	117	140	12.3676

#DB
.(((((.(((....))).)))))	chr10:102822464-102822707(+)$1	1	205	228	9.0492
(((((((.((....)).))))..	chr2:242707145-242707414(+)$1	1	152	175	10.5671
(.((((.(((....))).)))))	chr16:4431609-4431876(-)$1	1	4	27	9.4516
(((((..(((....)))..))))	chr7:228289-228563(+)$1	1	62	85	10.0825
(((((...((....)).))))).	chr17:38498926-38499175(+)$1	1	66	89	11.8558
.(((.((.((....)).)).)))	chr2:232575239-232575500(+)$1	1	185	208	12.4658
((((((..((....))..)))))	chr22:42525212-42525544(+)$1	1	169	192	11.5523
..((((.(((....))).)))).	chr21:46929119-46929371(-)$1	1	125	148	9.4570
(.((((((((....)))....))	chr16:725727-726021(+)$1	1	23	46	9.9308
((((.((.(....))).))))).	chr19:1468754-1469010(-)$1	1	208	231	10.2356
.((((((.((....)).))).))	chr19:56599440-56599675(-)$1	1	35	58	12.6911
(((((((.((....)).))).))	chr19:47778371-47778591(+)$1	1	134	157	12.8255
.((((((.((....)).))).))	chr19:56599527-56599789(-)$1	1	149	172	12.6911
((((.((.((....)).)).)))	chr6:48036284-48036526(-)$1	1	175	198	12.7020
..(((((..((...))..)))))	chr9:132382166-132382447(+)$1	1	219	242	9.6686
((((((((((....)).))))).	chr17:48545494-48545731(+)$1	1	134	157	11.7691
((((((..((....))..).)))	chr16:1433713-1433970(-)$1	1	157	180	12.0656
..(((((.((....)))))))..	chr14:103576291-103576532(+)$1	1	136	159	11.8250
(((((...((....)).))))))	chr19:49843012-49843263(-)$1	1	131	154	11.6888
((((.((.((....)).)).)))	chr14:23991188-23991485(+)$1	1	65	88	12.7020
((((((.(((....)))))))))	chr11:63883990-63884230(-)$1	1	6	29	9.3477
.(((....((....))...))).	chr8:145754278-145754567(-)$1	1	113	136	12.8400
(.((.(.(((....))).).).)	chr17:75471689-75471959(+)$1	1	111	134	10.1595
((((.((.((....)).))))))	chr9:38620172-38620504(-)$1	1	198	221	12.1557
)(((...(((....)))...)))	chr19:38876626-38876875(+)$1	1	99	122	9.9308
((((.(.(.((...)).).).))	chr12:132402927-132403160(+)$1	1	64	87	9.9169
((((.(((.((...)).)))...	chr1:976415-976662(+)$1	1	101	124	9.9669
(.((.((.((....)).)).)).	chr16:431662-431925(-)$1	1	237	260	11.4402
(((((((..(....)..))))).	chr16:725994-726279(+)$1	1	148	171	9.7645
((((((.(((....)))..))))	chr14:24002558-24002839(+)$1	1	115	138	9.9827
(..(((..((....))..)))..	chr16:2580661-2580906(+)$1	1	34	57	12.4479
(((((..(((....)))..))))	chr11:1983456-1983699(+)$1	1	216	239	9.0929
.(((((((((....)).))).))	chr11:57243950-57244207(-)$1	1	17	40	10.6898
..(((((.((....))...))))	chr1:36788407-36788689(+)$1	1	19	42	11.0073
.(((((.(((....)))))))))	chr12:62996869-62997141(+)$1	1	13	36	9.1475
(.((((((((....)).))))))	chr19:577881-578125(+)$1	1	178	201	10.9468
...((((.((....)).))))..	chr5:154135275-154135541(+)$1	1	183	206	12.3676
(((..((.((....)).))..))	chr19:47731493-47731821(-)$1	1	263	286	11.6871
((((.((..(....)..)).)))	chr17:79875862-79876133(-)$1	1	189	212	9.9317
(.(((..(((....)))..))).	chr19:1032588-1032840(+)$1	1	86	109	9.9737
.(.((((.((....)))))).))	chr11:66626359-66626599(-)$1	1	187	210	11.2210
(.((.((.((....)).)).)).	chr18:30350897-30351160(+)$1	1	22	45	11.2597
(((.(((.((....)).))).).	chr19:56663010-56663268(+)$1	1	65	88	12.5760
((((((((((....))).)))))	chr15:51386772-51387033(+)$1	1	66	89	9.5913
.(.(((((((....)))..))))	chr5:176868668-176868891(-)$1	1	25	48	9.0263
((((.(.(.((...)).).).))	chr12:132402960-132403243(+)$1	1	31	54	9.9169
((.((((..(....)..)))).)	chr21:46876313-46876572(+)$1	1	69	92	9.1921
((((.(.(.((...)).).).))	chr12:132402836-132403127(+)$1	1	155	178	9.9169
(((((((.((....)).))))))	chr16:29817801-29818126(-)$1	1	297	320	11.4581
(.(((....((...)).))).))	chr21:46876599-46876866(+)$1	1	226	249	9.9126
((((.(((((....))...))).	chr6:43738643-43738866(+)$1	1	6	29	12.8532
(..(.((.((....)).)).)..	chr10:101379900-101380215(-)$1	1	74	97	12.0690
...((((.((....)).)))).)	chr17:75471535-75471763(+)$1	1	35	58	11.9301
...((((.((....)).))))..	chr5:154135341-154135595(+)$1	1	117	140	12.3676

#PSSM
e : 0.33	c : 0.12	[ : 0.11	" : 0.09	f : 0.07	: : 0.05	g : 0.05	d : 0.03	a : 0.03	b : 0.03	! : 0.01	& : 0.01	
e : 0.25	c : 0.22	[ : 0.14	f : 0.09	" : 0.09	! : 0.05	g : 0.05	a : 0.03	d : 0.01	: : 0.01	
e : 0.35	c : 0.22	f : 0.11	d : 0.05	" : 0.05	[ : 0.05	g : 0.03	a : 0.03	b : 0.03	! : 0.03	
e : 0.35	c : 0.20	d : 0.18	f : 0.11	g : 0.03	a : 0.03	b : 0.03	! : 0.01	[ : 0.01	
[ : 0.27	e : 0.22	d : 0.18	c : 0.12	f : 0.11	g : 0.01	# : 0.01	" : 0.01	! : 0.01	
e : 0.18	b : 0.18	d : 0.16	c : 0.14	a : 0.09	! : 0.05	" : 0.05	f : 0.05	# : 0.03	g : 0.01	
[ : 0.18	b : 0.18	d : 0.12	e : 0.12	c : 0.12	! : 0.11	" : 0.05	# : 0.03	f : 0.03	
[ : 0.38	c : 0.31	! : 0.12	a : 0.05	" : 0.03	# : 0.03	e : 0.01	f : 0.01	
b : 0.55	c : 0.25	! : 0.07	[ : 0.07	a : 0.01	# : 0.01	
b : 0.66	c : 0.25	a : 0.05	m : 0.01	
m : 0.88	b : 0.11	
m : 0.88	l : 0.11	
m : 0.88	l : 0.11	
m : 0.87	l : 0.11	a : 0.01	
b : 0.68	c : 0.25	a : 0.05	
b : 0.68	c : 0.25	2 : 0.05	
] : 0.51	c : 0.25	2 : 0.12	3 : 0.05	e : 0.01	d : 0.01	
2 : 0.16	b : 0.16	c : 0.12	d : 0.11	e : 0.11	] : 0.09	3 : 0.07	f : 0.05	a : 0.05	4 : 0.01	g : 0.01	
e : 0.16	b : 0.16	d : 0.14	c : 0.14	2 : 0.09	f : 0.07	3 : 0.07	] : 0.05	a : 0.03	4 : 0.01	g : 0.01	
e : 0.22	c : 0.20	d : 0.16	] : 0.16	f : 0.09	a : 0.05	g : 0.03	4 : 0.01	3 : 0.01	2 : 0.01	
e : 0.27	] : 0.18	d : 0.14	c : 0.11	f : 0.11	g : 0.03	a : 0.03	b : 0.03	4 : 0.01	3 : 0.01	2 : 0.01	
e : 0.29	c : 0.22	f : 0.11	d : 0.07	2 : 0.05	] : 0.05	3 : 0.05	g : 0.03	b : 0.03	a : 0.03	5 : 0.01	
e : 0.22	c : 0.16	2 : 0.12	f : 0.11	] : 0.09	g : 0.07	3 : 0.07	d : 0.07	5 : 0.01	: : 0.01	a : 0.01	

#score	591.3670004351441
#seq	54
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_CDS_m3_run2.txt

#BEAR
::::::::::::::::::::::::	chr1:14107181-14107524(+)$1	343	17	41	10.6275
::::::::::::::::::::::::	chrM:5331-5601(+)$1	270	28	52	10.6275
::::::::::::::::::::::::	chr17:2298354-2298639(-)$1	285	100	124	10.6275
::::::::::::::::::::::::	chr1:171526774-171527025(+)$1	251	0	24	10.6275
::::::::::::::::::::::::	chr7:73011496-73011751(-)$1	255	26	50	10.6275
::::::::::::::::::::::::	chr12:122261010-122261313(+)$1	303	217	241	10.6275
FF::::::::::::::::::::::	chr7:73011730-73011942(-)$1	212	187	211	9.3414
::::::::::::::::::::::::	chr12:7045694-7045969(+)$1	275	150	174	10.6275
::::::::::::::::::::::::	chr1:153923729-153924002(-)$1	273	53	77	10.6275
::::::::::::::::::::::::	chr17:40946791-40947095(+)$1	304	125	149	10.6275
:::::::::::::::::::::EEE	chr1:8420600-8420931(-)$1	331	283	307	9.2755
::::::::::::::::::::::::	chr12:7045613-7045880(+)$1	267	0	24	10.6275
::::::::::::::::::::::::	chr17:42474930-42475187(-)$1	257	94	118	10.6275
::::::::::::::::::::::::	chrM:10873-11108(+)$1	235	0	24	10.6275
DDD:::::::::::::::::::::	chr20:33328675-33328951(-)$1	276	234	258	8.9239
::::::::::::::::::::::::	chr17:27212855-27213122(-)$1	267	100	124	10.6275
::::::::::::::::::::::::	chr6:31626716-31627047(+)$1	331	154	178	10.6275
::::::::::::::::::::::::	chr11:46398630-46398912(+)$1	282	73	97	10.6275
::::::::::::::::CCC:::::	chr12:49434167-49434448(-)$1	281	234	258	9.7952
::::::::::::::::::::::::	chr5:31526670-31526906(-)$1	236	54	78	10.6275
:::::::::::::::::::::::G	chr14:24653312-24653604(-)$1	292	135	159	10.2206
::::::::::::::::::::::::	chr16:67576727-67576986(+)$1	259	29	53	10.6275
::::::::::::::::::::::A}	chr12:57111071-57111323(-)$1	252	86	110	9.9450
::::::::::::::::::::::::	chrM:3438-3653(+)$1	215	46	70	10.6275
::::::::::::::::::::::::	chr11:61048316-61048669(-)$1	353	139	163	10.6275
::::::::::::::::::::::::	chr12:122252155-122252468(+)$1	313	172	196	10.6275
bb::::::::::::::::::::::	chr19:15353695-15353972(-)$1	277	98	122	9.4794
::::::::::::::::::::::::	chr19:496446-496770(-)$1	324	172	196	10.6275
::::::::::::::::::::::::	chr10:103900736-103901016(+)$1	280	254	278	10.6275
::::::::::::::::::::::::	chr7:73011586-73011839(-)$1	253	114	138	10.6275
::::::::::::::::::::::A}	chr12:57111158-57111391(-)$1	233	154	178	9.9450
::::::::::::::::::::::::	chrM:10831-11044(+)$1	213	85	109	10.6275
YYCCC:::::::::::::::::::	chrM:14697-14939(+)$1	242	103	127	8.9857
::::::::::::::::::::::::	chr17:7417170-7417424(+)$1	254	0	24	10.6275
::::::::::::::::::::::::	chr16:30748741-30749001(+)$1	260	16	40	10.6275
::::::::::::::::::::::::	chr12:57114828-57115109(-)$1	281	0	24	10.6275
DD::::::::::::::::::::::	chr5:31526546-31526811(-)$1	265	2	26	9.5322
::::::::::::::::::::::::	chr12:49433766-49434032(-)$1	266	71	95	10.6275
::::::::::::::::::::::::	chr12:57919562-57919810(+)$1	248	177	201	10.6275
::::::::::::::::CCC@@@@@	chr7:73011697-73011930(-)$1	233	177	201	9.1927
::::::::::::::::::::::::	chr12:122617970-122618256(+)$1	286	114	138	10.6275
::::::::::::::::::::::::	chr17:30469834-30470151(+)$1	317	166	190	10.6275
::::::::::::::::::::::::	chr1:33236968-33237212(+)$1	244	0	24	10.6275
::::::::::::::::::::::::	chr12:53511880-53512254(+)$1	374	159	183	10.6275
::::::::::::::::::::::::	chr17:7416641-7417010(+)$1	369	162	186	10.6275
EEE:::::::::::::::::::::	chr12:57110974-57111234(-)$1	260	138	162	9.4174
::::::::::::::::::::::::	chr17:7417081-7417370(+)$1	289	19	43	10.6275
::::::::::::::::::::::::	chr17:42475016-42475275(-)$1	259	8	32	10.6275
::::::::::::::::::::::HH	chr12:57112093-57112340(-)$1	247	23	47	9.7156
::::::::::::::::::::::::	chr12:49444440-49444649(-)$1	209	77	101	10.6275
::::::::::::::::::::::::	chr17:76201847-76202140(+)$1	293	22	46	10.6275
::::::::::::::::::::::::	chr19:17531726-17532042(+)$1	316	130	154	10.6275
::::::::::::::::::::::::	chr22:51019964-51020279(-)$1	315	203	227	10.6275
::::::::::::::::::::::::	chr12:112036844-112037119(-)$1	275	108	132	10.6275
::::::::::::::::::::::::	chr7:138968782-138969089(+)$1	307	88	112	10.6275
::::::::::::::::::::::::	chr14:99976817-99977110(+)$1	293	75	99	10.6275
::::::::::::::::::::::::	chr19:41255597-41255873(-)$1	276	65	89	10.6275
::::::::::::::::::::::::	chr19:48197564-48197970(+)$1	406	151	175	10.6275
HHH:::::::::::::::::::::	chr1:33236582-33236840(+)$1	258	135	159	9.2719
::::::::::::::::::::::::	chr17:40946895-40947173(+)$1	278	26	50	10.6275
::::::::::::::::::::::::	chr16:31476146-31476478(+)$1	332	132	156	10.6275
::::::::::::::::::::::::	chr12:49445257-49445564(-)$1	307	0	24	10.6275

#otherMatches

#Seq PSSM
CCUCUUCCCCUCCACCCUGUCCCC	chr1:14107181-14107524(+)$1	343	17	41	10.6275
UCUACUCCACCUCAAUCACACUAC	chrM:5331-5601(+)$1	270	28	52	10.6275
accaacuccccucagccucuaccc	chr17:2298354-2298639(-)$1	285	100	124	10.6275
ccaacccccauccuugccucaguu	chr1:171526774-171527025(+)$1	251	0	24	10.6275
AGCCCAGCCCCCACCCCCUUCCCC	chr7:73011496-73011751(-)$1	255	26	50	10.6275
cccuccaccaccccuuccccccca	chr12:122261010-122261313(+)$1	303	217	241	10.6275
GCCUUCCCACCCACCCCACAGUCU	chr7:73011730-73011942(-)$1	212	187	211	9.3414
CCCACCCACCAGUCUCAACACAUC	chr12:7045694-7045969(+)$1	275	150	174	10.6275
cuccuccuccucuuccuccuccuc	chr1:153923729-153924002(-)$1	273	53	77	10.6275
UCCCAUCUUCCCCAUCACUUCUCC	chr17:40946791-40947095(+)$1	304	125	149	10.6275
CUCCCUGUCCACACAUCACCCCCC	chr1:8420600-8420931(-)$1	331	283	307	9.2755
cugccucccccuucccAGCUUCCC	chr12:7045613-7045880(+)$1	267	0	24	10.6275
CCUUCACCUUUCACCCUGUCCCAC	chr17:42474930-42475187(-)$1	257	94	118	10.6275
CCUACUAUUUUUUAACCAAAUCAA	chrM:10873-11108(+)$1	235	0	24	10.6275
GAACACUCUUCCCUCUUCACAGUC	chr20:33328675-33328951(-)$1	276	234	258	8.9239
GUGUCCCCUCCUUCCCUUCCUGUC	chr17:27212855-27213122(-)$1	267	100	124	10.6275
UCCUCACCUUCCCUCUCCAACCCC	chr6:31626716-31627047(+)$1	331	154	178	10.6275
CCUGACCUCCCAACCCCCACUUCC	chr11:46398630-46398912(+)$1	282	73	97	10.6275
CCUGACCCUUAUUCUCGCCCACCC	chr12:49434167-49434448(-)$1	281	234	258	9.7952
UCUCAAACUCUCCAGCCCCCAAUU	chr5:31526670-31526906(-)$1	236	54	78	10.6275
CCCUCCCCUCCUGUCUUCCCACUG	chr14:24653312-24653604(-)$1	292	135	159	10.2206
CCCUCCAAACACUCAGACCCCACC	chr16:67576727-67576986(+)$1	259	29	53	10.6275
CCCAACUACUCCAUCCUCCAAAGA	chr12:57111071-57111323(-)$1	252	86	110	9.9450
CCCCUAAAACCCGCCACAUCUACC	chrM:3438-3653(+)$1	215	46	70	10.6275
CCCCACGACUACCCACAUCCUCCC	chr11:61048316-61048669(-)$1	353	139	163	10.6275
UCCCGCCCCCACCCAUCCUGCCAC	chr12:122252155-122252468(+)$1	313	172	196	10.6275
GCAGUUUUCCACCCACAUCCAACA	chr19:15353695-15353972(-)$1	277	98	122	9.4794
CCCCCUCCUAACUCACUCCUCUCU	chr19:496446-496770(-)$1	324	172	196	10.6275
UACUACCUGAUCCGUUUACUCACU	chr10:103900736-103901016(+)$1	280	254	278	10.6275
AGCCCAGCCCCCACCCCCUUCCCC	chr7:73011586-73011839(-)$1	253	114	138	10.6275
CCCAACUACUCCAUCCUCCAAAGA	chr12:57111158-57111391(-)$1	233	154	178	9.9450
UCCCCAACCUUUUCCUCCGACCCC	chrM:10831-11044(+)$1	213	85	109	10.6275
CAUCGACCUCCCCACCCCAUCCAA	chrM:14697-14939(+)$1	242	103	127	8.9857
CCAGUCCCAAAUAUUCACCCACCU	chr17:7417170-7417424(+)$1	254	0	24	10.6275
uacccauuucagccccaaauccaA	chr16:30748741-30749001(+)$1	260	16	40	10.6275
UCCCCCUCUACUAUUGCCUCGACC	chr12:57114828-57115109(-)$1	281	0	24	10.6275
CUUUGUACCCUUCCCCCCACCCAU	chr5:31526546-31526811(-)$1	265	2	26	9.5322
CCUCUCCCAUGCGUUUCACUUUCC	chr12:49433766-49434032(-)$1	266	71	95	10.6275
CACAGCAUCCCCCACUACCCCCUC	chr12:57919562-57919810(+)$1	248	177	201	10.6275
CUUCCCACCCACCCCACAGUCUGU	chr7:73011697-73011930(-)$1	233	177	201	9.1927
UCCUCCCUGUCUUCACCAUGCCCC	chr12:122617970-122618256(+)$1	286	114	138	10.6275
CCGUCCUCCCAAGCCAUGUCCCUA	chr17:30469834-30470151(+)$1	317	166	190	10.6275
CACCUUCCCCACCCCCAUCUUAUC	chr1:33236968-33237212(+)$1	244	0	24	10.6275
ccacucaccaaucccaccacccuu	chr12:53511880-53512254(+)$1	374	159	183	10.6275
uacucacccaccagcccGAACUAU	chr17:7416641-7417010(+)$1	369	162	186	10.6275
AGUGAUUCCUCUCUCCCCCAAAAA	chr12:57110974-57111234(-)$1	260	138	162	9.4174
ACCCCAACCAGUCCUUCUUACAGU	chr17:7417081-7417370(+)$1	289	19	43	10.6275
UUCACCCUCACCCCCAUCCCCAAC	chr17:42475016-42475275(-)$1	259	8	32	10.6275
UCCAGCUACUCCAUCCCCCAAAGG	chr12:57112093-57112340(-)$1	247	23	47	9.7156
UCCCCUUCCUCCUCCACUCUCACC	chr12:49444440-49444649(-)$1	209	77	101	10.6275
UUAUUUUCCUCUUUCUUUUACCCA	chr17:76201847-76202140(+)$1	293	22	46	10.6275
acccuucccuaccccuccUCUUCU	chr19:17531726-17532042(+)$1	316	130	154	10.6275
AAUUUCCCCCAAAACCCUGACUUC	chr22:51019964-51020279(-)$1	315	203	227	10.6275
CCUUCGUCGUCCUCCUUCUCCCCC	chr12:112036844-112037119(-)$1	275	108	132	10.6275
AAACUUAUUUCUAAAUCCAACCCA	chr7:138968782-138969089(+)$1	307	88	112	10.6275
ACcccccacccccacccaccuaca	chr14:99976817-99977110(+)$1	293	75	99	10.6275
UCUUAAACCUUUAAAAUCUCCAUC	chr19:41255597-41255873(-)$1	276	65	89	10.6275
CCCCCACCUCCCUCCAUCCUCCAC	chr19:48197564-48197970(+)$1	406	151	175	10.6275
UGGGCCACAGAUAUUGACCCCCCU	chr1:33236582-33236840(+)$1	258	135	159	9.2719
UCUUCCCCAUCACUUCUCCCCCAU	chr17:40946895-40947173(+)$1	278	26	50	10.6275
CCCAGAACCUCACCUUCCCACUCA	chr16:31476146-31476478(+)$1	332	132	156	10.6275
UAUGUCCCCACCACCUGAAGAAUC	chr12:49445257-49445564(-)$1	307	0	24	10.6275

#DB
........................	chr1:14107181-14107524(+)$1	1	17	41	10.6275
........................	chrM:5331-5601(+)$1	1	28	52	10.6275
........................	chr17:2298354-2298639(-)$1	1	100	124	10.6275
........................	chr1:171526774-171527025(+)$1	1	0	24	10.6275
........................	chr7:73011496-73011751(-)$1	1	26	50	10.6275
........................	chr12:122261010-122261313(+)$1	1	217	241	10.6275
))......................	chr7:73011730-73011942(-)$1	1	187	211	9.3414
........................	chr12:7045694-7045969(+)$1	1	150	174	10.6275
........................	chr1:153923729-153924002(-)$1	1	53	77	10.6275
........................	chr17:40946791-40947095(+)$1	1	125	149	10.6275
.....................)))	chr1:8420600-8420931(-)$1	1	283	307	9.2755
........................	chr12:7045613-7045880(+)$1	1	0	24	10.6275
........................	chr17:42474930-42475187(-)$1	1	94	118	10.6275
........................	chrM:10873-11108(+)$1	1	0	24	10.6275
))).....................	chr20:33328675-33328951(-)$1	1	234	258	8.9239
........................	chr17:27212855-27213122(-)$1	1	100	124	10.6275
........................	chr6:31626716-31627047(+)$1	1	154	178	10.6275
........................	chr11:46398630-46398912(+)$1	1	73	97	10.6275
................))).....	chr12:49434167-49434448(-)$1	1	234	258	9.7952
........................	chr5:31526670-31526906(-)$1	1	54	78	10.6275
.......................)	chr14:24653312-24653604(-)$1	1	135	159	10.2206
........................	chr16:67576727-67576986(+)$1	1	29	53	10.6275
......................).	chr12:57111071-57111323(-)$1	1	86	110	9.9450
........................	chrM:3438-3653(+)$1	1	46	70	10.6275
........................	chr11:61048316-61048669(-)$1	1	139	163	10.6275
........................	chr12:122252155-122252468(+)$1	1	172	196	10.6275
))......................	chr19:15353695-15353972(-)$1	1	98	122	9.4794
........................	chr19:496446-496770(-)$1	1	172	196	10.6275
........................	chr10:103900736-103901016(+)$1	1	254	278	10.6275
........................	chr7:73011586-73011839(-)$1	1	114	138	10.6275
......................).	chr12:57111158-57111391(-)$1	1	154	178	9.9450
........................	chrM:10831-11044(+)$1	1	85	109	10.6275
..)))...................	chrM:14697-14939(+)$1	1	103	127	8.9857
........................	chr17:7417170-7417424(+)$1	1	0	24	10.6275
........................	chr16:30748741-30749001(+)$1	1	16	40	10.6275
........................	chr12:57114828-57115109(-)$1	1	0	24	10.6275
((......................	chr5:31526546-31526811(-)$1	1	2	26	9.5322
........................	chr12:49433766-49434032(-)$1	1	71	95	10.6275
........................	chr12:57919562-57919810(+)$1	1	177	201	10.6275
................))).....	chr7:73011697-73011930(-)$1	1	177	201	9.1927
........................	chr12:122617970-122618256(+)$1	1	114	138	10.6275
........................	chr17:30469834-30470151(+)$1	1	166	190	10.6275
........................	chr1:33236968-33237212(+)$1	1	0	24	10.6275
........................	chr12:53511880-53512254(+)$1	1	159	183	10.6275
........................	chr17:7416641-7417010(+)$1	1	162	186	10.6275
))).....................	chr12:57110974-57111234(-)$1	1	138	162	9.4174
........................	chr17:7417081-7417370(+)$1	1	19	43	10.6275
........................	chr17:42475016-42475275(-)$1	1	8	32	10.6275
......................((	chr12:57112093-57112340(-)$1	1	23	47	9.7156
........................	chr12:49444440-49444649(-)$1	1	77	101	10.6275
........................	chr17:76201847-76202140(+)$1	1	22	46	10.6275
........................	chr19:17531726-17532042(+)$1	1	130	154	10.6275
........................	chr22:51019964-51020279(-)$1	1	203	227	10.6275
........................	chr12:112036844-112037119(-)$1	1	108	132	10.6275
........................	chr7:138968782-138969089(+)$1	1	88	112	10.6275
........................	chr14:99976817-99977110(+)$1	1	75	99	10.6275
........................	chr19:41255597-41255873(-)$1	1	65	89	10.6275
........................	chr19:48197564-48197970(+)$1	1	151	175	10.6275
))).....................	chr1:33236582-33236840(+)$1	1	135	159	9.2719
........................	chr17:40946895-40947173(+)$1	1	26	50	10.6275
........................	chr16:31476146-31476478(+)$1	1	132	156	10.6275
........................	chr12:49445257-49445564(-)$1	1	0	24	10.6275

#PSSM
: : 0.88	D : 0.03	F : 0.01	b : 0.01	Y : 0.01	E : 0.01	H : 0.01	
: : 0.88	D : 0.03	F : 0.01	b : 0.01	Y : 0.01	E : 0.01	H : 0.01	
: : 0.93	D : 0.01	C : 0.01	E : 0.01	H : 0.01	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.99	
: : 0.96	C : 0.03	
: : 0.96	C : 0.03	
: : 0.96	C : 0.03	
: : 0.98	@ : 0.01	
: : 0.98	@ : 0.01	
: : 0.96	E : 0.01	@ : 0.01	
: : 0.91	A : 0.03	E : 0.01	@ : 0.01	H : 0.01	
: : 0.90	} : 0.03	E : 0.01	G : 0.01	@ : 0.01	H : 0.01	

#score	643.1625760930933
#seq	62
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_CDS_m1_run1.txt

#BEAR
ffffff!!ccc####cccoooooocccccc]ffffffccc	chr19:15512310-15512561(-)$1	251	96	136	12.2717
eeeee[ccc[eeeeerrrrrrrrreeeee333ccc]eeee	chr20:60737653-60737945(+)$1	292	80	120	11.5935
bb!!bb[ffffff####aqqqqqqqqa4444ffffff]bb	chr19:10406910-10407197(+)$1	287	190	230	15.3453
===a[dddddddd[ddddqqqqqqqqdddddddd4444dd	chr8:52811346-52811688(-)$1	342	133	173	13.8624
cc[ccc[bb"""ffffffqqqqqqqqffffff333bb]cc	chr16:28847427-28847738(+)$1	311	82	122	16.2900
e[bbggggggg[bb!!bbqqqqqqqqbbbb]ggggggg]b	chr11:58346747-58347044(+)$1	297	209	249	15.1667
ffffbbccca!!ffffffqqqqqqqqffffff22a]ccc]	chr12:56740569-56740892(-)$1	323	253	293	15.5319
ddffffff[a[a[ddddqqqqqqqqdddd22a]a]fffff	chr1:22177838-22178144(-)$1	306	89	129	13.9026
"""ccc"""cccbb[cccrrrrrrrrrccc]bb]ccc]cc	chr2:55276587-55276909(-)$1	322	257	297	14.7095
i####eeeee[bb!!cccqqqqqqqqccc]bb]eeeeeii	chr1:26496910-26497204(+)$1	294	149	189	16.4349
dddd:ffffffgggggggqqqqqqqqggggggg22fffff	chr22:50354815-50355086(+)$1	271	52	92	14.5873
[gggggggffffff[cccqqqqqqqqccc22ffffff000	chr6:25973198-25973530(+)$1	332	131	171	16.2330
cc[bb[ccccccffffffooooooffffff]ccc4444cc	chr19:1978292-1978514(+)$1	222	121	161	11.5690
cc!!bb[ffffff!!cccqqqqqqqqccc22ffffff]bb	chr15:80215333-80215694(-)$1	361	46	86	16.9063
Fdddd!!bb!!ccc[a[aqqqqqqqqa]a]ccc22bbddd	chr11:64010753-64011033(+)$1	280	227	267	15.2468
aiiiiiiiii[gggggggrrrrrrrrrggggggg]iiiii	chr8:145687759-145688000(-)$1	241	54	94	15.9748
eeee"""===========rrrrrrrrr===========ee	chr1:207494929-207495405(+)$1	476	327	367	16.2640
bb[ggggggg$$$$$bbcccooooooccc]bb]ggggggg	chr20:62373902-62374156(+)$1	254	145	185	11.2746
::ggggggg[bb[a[cccqqqqqqqqccc]abbggggggg	chr18:9102757-9103012(+)$1	255	82	122	15.6315
[eeeee!!ffffff[cccqqqqqqqqcccffffff22eee	chr20:62373515-62373802(+)$1	287	233	273	16.2521
ffff!!==========ssssssssss==========ffff	chr6:28891106-28891398(-)$1	292	114	154	15.1015
=========[a####cccqqqqqqqqccc22a]=======	chr20:42086836-42087114(+)$1	278	30	70	19.9083
ii[a[bb####ccc!!cccooooooccccccbb]a]iiii	chr9:74979417-74979671(-)$1	254	139	179	12.8012
a]iiiiiiiiigggggggrrrrrrrrrgggggggFFFFFF	chr7:6523402-6523700(-)$1	298	143	183	12.4766
c[ccc!!ffffff!!cccqqqqqqqqccc333ffffff44	chr3:9516154-9516436(+)$1	282	211	251	17.9169
eeeee####gggggggssssssssssggggggg333eeee	chr1:27022731-27023035(+)$1	304	128	168	14.0712
==========[ccc[cccqqqqqqqqccc22ccc======	chr7:107531629-107531933(+)$1	304	197	237	19.8440
HHHHeeeee!!gggggggqqqqqqqqggggggg22eeeee	chr12:110719600-110719847(+)$1	247	195	235	14.1713
ffbb!!ggggggg!!cccqqqqqqqqccc]ggggggg444	chr19:11145700-11145962(+)$1	262	165	205	18.4191
f::eeeee!!dddd[cccqqqqqqqqccc]dddd22eeee	chr2:98274455-98274734(-)$1	279	54	94	13.9082
=========!!eeeeerrrrrrrrreeeee22========	chr9:127533167-127533448(-)$1	281	237	277	14.8271
{BB:ccc####gggggggqqqqqqqqggggggg333ccce	chrX:20284628-20284891(-)$1	263	154	194	14.2686
[===============ssssssssss==============	chr6:31864797-31865082(-)$1	285	37	77	16.3825
d"""ccca!!accc[cccqqqqqqqqccc]ccc]a22a]c	chr19:5609951-5610250(-)$1	299	100	140	17.8343
ccc[bb!!bb[gggggggssssssssssggggggg]bb22	chr3:52514258-52514537(+)$1	279	38	78	12.4175
fff[eeeeeeeeee[arrrrrrrrra]eeeee]eeeee]f	chr10:6130988-6131356(+)$1	368	191	231	11.5763
eeeee[ffffffdddd[aqqqqqqqqa]dddd22ffffff	chr1:229693893-229694241(-)$1	348	205	245	14.0423
"""a[ccc[ccc[eeeeeqqqqqqqqeeeee]ccc]ccca	chr22:19431802-19432079(-)$1	277	148	188	16.3809
f!!eeeee!!ccc[ddddqqqqqqqqddddccc]eeeeef	chr1:896854-897115(+)$1	261	9	49	15.5444
c!!============[a[cccnnnnnccc22a]=======	chr17:73823576-73823859(-)$1	283	78	118	12.3089
f[==========!!avvvvvvvvvvvvva22=========	chrX:41193696-41193953(+)$1	257	150	190	13.2579
dddd!!ccc####eeeeeqqqqqqqqeeeee]ccc333dd	chr19:18420180-18420465(-)$1	285	206	246	15.7880
Egggggggcccbb!!bbrrrrrrrrrbbbb]ccc22gggg	chr16:30078597-30078876(+)$1	279	128	168	12.4314
============[eeeeepppppppeeeee]=========	chr17:46985885-46986143(+)$1	258	144	184	13.5372
===========ggggggg!!aooooooa22ggggggg444	chr3:47040270-47040595(+)$1	325	217	257	12.6364
bb####dddd####ddddqqqqqqqqdddd4444dddd44	chr17:39846357-39846591(+)$1	234	95	135	14.4465
cc[bb[ccccccffffffooooooffffff]ccc4444cc	chr19:1978314-1978537(+)$1	223	99	139	11.5690
eeee"""a[a[iiiiiiiiiooooooiiiiiiiiiaa]ee	chr5:179248034-179248279(+)$1	245	25	65	12.2728
fffffdddd[a[ffffffqqqqqqqqffffff]a]dddd4	chr19:2270509-2270778(+)$1	269	123	163	14.7397
!ccc[bb!!ddddeeeeeqqqqqqqqeeeee]ddddbb]c	chr19:1271406-1271667(+)$1	261	166	206	13.6286

#otherMatches

#Seq PSSM
GGUGAGGGAUCCUGAGGGGCUCCACCUGAUGCUCACCCCA	chr19:15512310-15512561(-)$1	251	96	136	12.2717
UGGGGUGUCUUCACCUUCAGAAGUGGUGACCUGGCUCCCC	chr20:60737653-60737945(+)$1	292	80	120	11.5935
UCCACCGCCUGCAAGAAGGGCGAGUACAACGUGCAGGAGG	chr19:10406910-10407197(+)$1	287	190	230	15.3453
CGUCUGGCUGCUGCGGACCCCGCCGAGUCCUAGCGCCUGG	chr8:52811346-52811688(-)$1	342	133	173	13.8624
UAGCUGGGGGAAUUUGGCAUGGAAGAGCUGAGGGGCUGCA	chr16:28847427-28847738(+)$1	311	82	122	16.2900
UGUCCCGCCGGAGGAAGGCCGAGUAUCCCCGCCGGCGGAG	chr11:58346747-58347044(+)$1	297	209	249	15.1667
GGCAUUACCUGCUCCUGGGUGGAGCACCAGGAUGAUGGUC	chr12:56740569-56740892(-)$1	323	253	293	15.5319
UCCCUGUCCGGCACCAGGUAUGGGACUGGAGGACAGACAG	chr1:22177838-22178144(-)$1	306	89	129	13.9026
ACCGCUCCCGGCUCCCACUUUCACCCUGUGUGAUGCCCAG	chr2:55276587-55276909(-)$1	322	257	297	14.7095
UCCCAGGCUGAAGCAGCUGAGCGUCGAGCCCUACAGUCAG	chr1:26496910-26497204(+)$1	294	149	189	16.4349
GCCGACGGGCUCCCGGUGAGUCGGACCGCCGGGCGGGCCC	chr22:50354815-50355086(+)$1	271	52	92	14.5873
GGAGGGGUGUGCGUAUAUAGAAAUGAAUGGAAUGCACCUC	chr6:25973198-25973530(+)$1	332	131	171	16.2330
CCUGGUGACUCGCUCUUGUGCCCCCAGGAGCCGAUCAAGU	chr19:1978292-1978514(+)$1	222	121	161	11.5690
CCCCUUGGGUCUCAGCGCAAAGUCGGGCGGCGGGGCCGGA	chr15:80215333-80215694(-)$1	361	46	86	16.9063
CUCCUGAGGGUGCAGAGCGAGUUUGGGGUGUGUGACUGGG	chr11:64010753-64011033(+)$1	280	227	267	15.2468
ggcccggggcggccgccgggcaggcggcggcggcggcucu	chr8:145687759-145688000(-)$1	241	54	94	15.9748
GGUCCAAGUCGGUCUCUGAGACACGCACAGGGGCCGGCGA	chr1:207494929-207495405(+)$1	476	327	367	16.2640
GUAGGGCUGCCUGACGCCCGCCCGCCUGGAGCCGCAGCCC	chr20:62373902-62374156(+)$1	254	145	185	11.2746
UUGCUCUCCGUGUCUCCCUUAGUUUUGGGCGCAGGAGAGC	chr18:9102757-9103012(+)$1	255	82	122	15.6315
UGUUGGUGUGGACACGCUGACCGACGGGCUGUCCAGCCUG	chr20:62373515-62373802(+)$1	287	233	273	16.2521
CUGCUGGGGCACGGCAGAGACUAACGUGUCGUGCCCGCAG	chr6:28891106-28891398(-)$1	292	114	154	15.1015
GCGCCGCGUGGCAGGGCCUCAAAGAUGGCGACGGCGCGGC	chr20:42086836-42087114(+)$1	278	30	70	19.9083
GCGGGCCAAUGGCGAAGCCGGAGCAGGCCGCGGAUGGCGG	chr9:74979417-74979671(-)$1	254	139	179	12.8012
GGCCGGGUCUCGCCGAGGACCCGCCGACCUCGGCCACCCC	chr7:6523402-6523700(-)$1	298	143	183	12.4766
AUGCAGUUGGGCUCCACCGCAUGCUAGGUUCCAGCCCACU	chr3:9516154-9516436(+)$1	282	211	251	17.9169
GGCCGGGUCUCUCCGCGGACGAGACAGCGGGGAUCAUGGC	chr1:27022731-27023035(+)$1	304	128	168	14.0712
CGGAGGCGGGCGCCUGGGCCGCACCACCCCUGGCCCCGCC	chr7:107531629-107531933(+)$1	304	197	237	19.8440
CUUCGGCUCCGCGCCCGCCGACAGCUGCGGGCGGAGGGUC	chr12:110719600-110719847(+)$1	247	195	235	14.1713
GACAAAGGGCCCACCGCCAGGACUCAGGCCUGGGUCCAAA	chr19:11145700-11145962(+)$1	262	165	205	18.4191
GGCCGGGCCUGGCACUGGAGUGGCAGCCGAUGCCCAGCCU	chr2:98274455-98274734(-)$1	279	54	94	13.9082
CGCCCUGGGAAGCCGCAGCGGCCCCGCGGCCCCUUAGGGU	chr9:127533167-127533448(-)$1	281	237	277	14.8271
AGCUGGCGGACCCGUGGCAGAAGAUGGCUGUGGAGAGCCC	chrX:20284628-20284891(-)$1	263	154	194	14.2686
AGGAgggggcggggccggggcgcggaggccccgcccccUC	chr6:31864797-31865082(-)$1	285	37	77	16.3825
GUUAGGCCUUGGGGUGAUGCCUAAGAAUCUCCCUCUCGUG	chr19:5609951-5610250(-)$1	299	100	140	17.8343
UCCUCUCUAACCAAGGUAAUCGUGUAUGUAUCUUGCUUCU	chr3:52514258-52514537(+)$1	279	38	78	12.4175
GGGUGGGUGGCCUGGCGGGACCUGAGGCGGGCGCGCCUUC	chr10:6130988-6131356(+)$1	368	191	231	11.5763
CCCGCAGCCGCUGCCUGGGCAGGGGACGAGGCCUggcggc	chr1:229693893-229694241(-)$1	348	205	245	14.0423
AGAGUCUCAUUUGCACAGCAAUCCCUCUGUGAGAGCGAGC	chr22:19431802-19432079(-)$1	277	148	188	16.3809
CCAAGGAGAUCCGUGCGCACAAAGUGGUGCUGGCCUCCUG	chr1:896854-897115(+)$1	261	9	49	15.5444
CUGCCCCUGCCCGCCUCUCAGAAAAGCUGCUGUGGUGGGC	chr17:73823576-73823859(-)$1	283	78	118	12.3089
UGCGCGAAUCCCGACUGAUUAGUGACCUGGGGGGGUUUGC	chrX:41193696-41193953(+)$1	257	150	190	13.2579
caccuccccaagccucaguuuccccucugagaggguaugg	chr19:18420180-18420465(-)$1	285	206	246	15.7880
UGGGAGUGGCAGGCUGAUCCCCUAAUUCCCAUGUGACACU	chr16:30078597-30078876(+)$1	279	128	168	12.4314
cgggggcCCGGGGAGCGGCCUGGCUCCGCUGCCCGGGCUC	chr17:46985885-46986143(+)$1	258	144	184	13.5372
GGUUCCCUGGUGCAGGAGUCCUUGGCUGUCUUUCUGUUGG	chr3:47040270-47040595(+)$1	325	217	257	12.6364
CACUACUUGAUUUGUGCCUCUCUGCUGGCAAAUCUCAGAU	chr17:39846357-39846591(+)$1	234	95	135	14.4465
CCUGGUGACUCGCUCUUGUGCCCCCAGGAGCCGAUCAAGU	chr19:1978314-1978537(+)$1	223	99	139	11.5690
GGACCCUGCGAGCGGCUGCUGAGCCGGGUGGCCGCCCUGU	chr5:179248034-179248279(+)$1	245	25	65	12.2728
CCCGCGGGGUCUCGGUCGAGCUUUCCCGACUGCGUCCCCC	chr19:2270509-2270778(+)$1	269	123	163	14.7397
GGGAACCGGUUCGAGUCCAGGAGUGGGGGCUACGGAGGCU	chr19:1271406-1271667(+)$1	261	166	206	13.6286

#DB
((((((..(((....(((......)))))).)))))))))	chr19:15512310-15512561(-)$1	1	96	136	12.2717
(((((.(((.(((((.........)))))...))).))))	chr20:60737653-60737945(+)$1	1	80	120	11.5935
((..((.((((((....(........)....)))))).))	chr19:10406910-10407197(+)$1	1	190	230	15.3453
((((.((((((((.((((........))))))))....))	chr8:52811346-52811688(-)$1	1	133	173	13.8624
((.(((.((...((((((........))))))...)).))	chr16:28847427-28847738(+)$1	1	82	122	16.2900
(.(((((((((.((..((........)))).))))))).)	chr11:58346747-58347044(+)$1	1	209	249	15.1667
((((((((((..((((((........))))))..).))).	chr12:56740569-56740892(-)$1	1	253	293	15.5319
((((((((.(.(.((((........))))..).).)))))	chr1:22177838-22178144(-)$1	1	89	129	13.9026
...(((...(((((.(((.........))).)).))).))	chr2:55276587-55276909(-)$1	1	257	297	14.7095
(....(((((.((..(((........))).)).)))))))	chr1:26496910-26497204(+)$1	1	149	189	16.4349
)))).(((((((((((((........)))))))..)))))	chr22:50354815-50355086(+)$1	1	52	92	14.5873
.(((((((((((((.(((........)))..))))))...	chr6:25973198-25973530(+)$1	1	131	171	16.2330
((.((.((((((((((((......)))))).)))....))	chr19:1978292-1978514(+)$1	1	121	161	11.5690
((..((.((((((..(((........)))..)))))).))	chr15:80215333-80215694(-)$1	1	46	86	16.9063
)((((..((..(((.(.(........).).)))..)))))	chr11:64010753-64011033(+)$1	1	227	267	15.2468
)(((((((((.(((((((.........))))))).)))))	chr8:145687759-145688000(-)$1	1	54	94	15.9748
((((...(((((((((((.........)))))))))))))	chr1:207494929-207495405(+)$1	1	327	367	16.2640
((.(((((((.....(((((......))).)).)))))))	chr20:62373902-62374156(+)$1	1	145	185	11.2746
..(((((((.((.(.(((........))).))))))))))	chr18:9102757-9103012(+)$1	1	82	122	15.6315
.(((((..((((((.(((........)))))))))..)))	chr20:62373515-62373802(+)$1	1	233	273	16.2521
((((..((((((((((..........))))))))))))))	chr6:28891106-28891398(-)$1	1	114	154	15.1015
(((((((((.(....(((........)))..).)))))))	chr20:42086836-42087114(+)$1	1	30	70	19.9083
((.(.((....(((..(((......)))))))).).))))	chr9:74979417-74979671(-)$1	1	139	179	12.8012
).)))))))))(((((((.........)))))))((((((	chr7:6523402-6523700(-)$1	1	143	183	12.4766
(.(((..((((((..(((........)))...))))))..	chr3:9516154-9516436(+)$1	1	211	251	17.9169
(((((....(((((((..........)))))))...))))	chr1:27022731-27023035(+)$1	1	128	168	14.0712
((((((((((.(((.(((........)))..)))))))))	chr7:107531629-107531933(+)$1	1	197	237	19.8440
))))(((((..(((((((........)))))))..)))))	chr12:110719600-110719847(+)$1	1	195	235	14.1713
((((..(((((((..(((........))).)))))))...	chr19:11145700-11145962(+)$1	1	165	205	18.4191
)..(((((..((((.(((........))).))))..))))	chr2:98274455-98274734(-)$1	1	54	94	13.9082
(((((((((..(((((.........)))))..))))))))	chr9:127533167-127533448(-)$1	1	237	277	14.8271
.((.(((....(((((((........)))))))...)))(	chrX:20284628-20284891(-)$1	1	154	194	14.2686
.(((((((((((((((..........))))))))))))))	chr6:31864797-31865082(-)$1	1	37	77	16.3825
(...((((..((((.(((........))).))).)..).)	chr19:5609951-5610250(-)$1	1	100	140	17.8343
(((.((..((.(((((((..........))))))).))..	chr3:52514258-52514537(+)$1	1	38	78	12.4175
(((.((((((((((.(.........).))))).))))).)	chr10:6130988-6131356(+)$1	1	191	231	11.5763
(((((.((((((((((.(........).))))..))))))	chr1:229693893-229694241(-)$1	1	205	245	14.0423
...(.(((.(((.(((((........))))).))).))))	chr22:19431802-19432079(-)$1	1	148	188	16.3809
(..(((((..(((.((((........))))))).))))))	chr1:896854-897115(+)$1	1	9	49	15.5444
(..((((((((((((.(.(((.....)))..).)))))))	chr17:73823576-73823859(-)$1	1	78	118	12.3089
(.((((((((((..(.............)..)))))))))	chrX:41193696-41193953(+)$1	1	150	190	13.2579
((((..(((....(((((........))))).)))...))	chr19:18420180-18420465(-)$1	1	206	246	15.7880
)((((((((((((..((.........)))).)))..))))	chr16:30078597-30078876(+)$1	1	128	168	12.4314
((((((((((((.(((((.......))))).)))))))))	chr17:46985885-46986143(+)$1	1	144	184	13.5372
((((((((((((((((((..(......)..)))))))...	chr3:47040270-47040595(+)$1	1	217	257	12.6364
((....((((....((((........))))....))))..	chr17:39846357-39846591(+)$1	1	95	135	14.4465
((.((.((((((((((((......)))))).)))....))	chr19:1978314-1978537(+)$1	1	99	139	11.5690
((((...(.(.(((((((((......))))))))))).))	chr5:179248034-179248279(+)$1	1	25	65	12.2728
(((((((((.(.((((((........)))))).).)))).	chr19:2270509-2270778(+)$1	1	123	163	14.7397
.(((.((..(((((((((........))))).)))))).)	chr19:1271406-1271667(+)$1	1	166	206	13.6286

#PSSM
f : 0.18	c : 0.14	e : 0.12	= : 0.12	d : 0.08	b : 0.06	[ : 0.06	" : 0.04	i : 0.04	a : 0.04	F : 0.02	: : 0.02	H : 0.02	{ : 0.02	E : 0.02	! : 0.02	
= : 0.14	f : 0.12	e : 0.12	c : 0.12	d : 0.08	b : 0.06	[ : 0.06	" : 0.06	g : 0.04	i : 0.04	: : 0.04	! : 0.04	# : 0.02	] : 0.02	H : 0.02	B : 0.02	
= : 0.16	f : 0.12	e : 0.12	[ : 0.10	! : 0.08	" : 0.06	d : 0.06	g : 0.06	c : 0.06	b : 0.04	# : 0.04	i : 0.04	H : 0.02	: : 0.02	B : 0.02	
e : 0.16	= : 0.16	f : 0.10	c : 0.08	b : 0.08	g : 0.08	a : 0.06	d : 0.06	! : 0.04	# : 0.04	i : 0.04	[ : 0.04	H : 0.02	: : 0.02	" : 0.02	
e : 0.16	= : 0.16	b : 0.12	c : 0.10	g : 0.10	[ : 0.08	f : 0.06	! : 0.06	# : 0.04	i : 0.04	" : 0.04	: : 0.02	d : 0.02	
= : 0.16	b : 0.12	e : 0.12	c : 0.10	g : 0.10	! : 0.10	[ : 0.08	f : 0.06	d : 0.04	i : 0.04	" : 0.04	# : 0.04	
= : 0.18	c : 0.16	g : 0.12	! : 0.10	e : 0.10	[ : 0.06	d : 0.06	f : 0.06	" : 0.06	i : 0.04	b : 0.04	# : 0.02	
= : 0.19	c : 0.12	f : 0.12	g : 0.12	e : 0.10	! : 0.08	d : 0.06	# : 0.06	b : 0.04	i : 0.04	a : 0.04	" : 0.02	
= : 0.19	c : 0.14	f : 0.14	g : 0.08	! : 0.08	d : 0.06	b : 0.06	[ : 0.06	e : 0.06	# : 0.06	i : 0.04	" : 0.02	
= : 0.16	f : 0.14	c : 0.12	! : 0.12	[ : 0.08	g : 0.08	d : 0.06	a : 0.06	# : 0.06	e : 0.04	i : 0.04	" : 0.02	b : 0.02	
c : 0.14	f : 0.14	= : 0.14	[ : 0.12	! : 0.08	# : 0.08	d : 0.06	g : 0.06	a : 0.06	e : 0.04	" : 0.02	$ : 0.02	b : 0.02	i : 0.02	
c : 0.18	g : 0.18	f : 0.12	= : 0.12	# : 0.08	e : 0.06	d : 0.06	b : 0.06	[ : 0.04	" : 0.02	! : 0.02	a : 0.02	$ : 0.02	i : 0.02	
f : 0.19	g : 0.18	c : 0.10	# : 0.08	d : 0.08	b : 0.08	[ : 0.08	= : 0.08	e : 0.06	$ : 0.02	! : 0.02	i : 0.02	
g : 0.16	e : 0.14	f : 0.14	! : 0.12	# : 0.08	c : 0.08	= : 0.08	d : 0.06	[ : 0.04	b : 0.04	$ : 0.02	a : 0.02	i : 0.02	
[ : 0.18	g : 0.16	! : 0.14	e : 0.12	d : 0.10	f : 0.10	= : 0.08	# : 0.06	$ : 0.02	a : 0.02	i : 0.02	
c : 0.25	g : 0.16	d : 0.10	f : 0.10	e : 0.10	= : 0.06	! : 0.04	a : 0.04	b : 0.04	r : 0.02	# : 0.02	[ : 0.02	v : 0.02	i : 0.02	
c : 0.27	g : 0.14	f : 0.10	d : 0.08	e : 0.08	r : 0.06	b : 0.06	s : 0.06	[ : 0.04	# : 0.02	= : 0.02	a : 0.02	v : 0.02	i : 0.02	
c : 0.30	g : 0.14	f : 0.10	r : 0.08	e : 0.08	a : 0.06	d : 0.06	s : 0.06	b : 0.02	q : 0.02	= : 0.02	[ : 0.02	v : 0.02	i : 0.02	
q : 0.56	r : 0.16	s : 0.08	o : 0.06	c : 0.06	v : 0.02	p : 0.02	! : 0.02	i : 0.02	
q : 0.56	r : 0.16	o : 0.08	s : 0.08	c : 0.04	v : 0.02	p : 0.02	! : 0.02	i : 0.02	
q : 0.56	r : 0.16	o : 0.12	s : 0.08	c : 0.02	v : 0.02	p : 0.02	a : 0.02	
q : 0.56	r : 0.16	o : 0.14	s : 0.08	n : 0.02	v : 0.02	p : 0.02	
q : 0.56	r : 0.16	o : 0.14	s : 0.08	n : 0.02	v : 0.02	p : 0.02	
q : 0.56	r : 0.16	o : 0.14	s : 0.08	n : 0.02	v : 0.02	p : 0.02	
q : 0.56	r : 0.14	o : 0.08	s : 0.08	f : 0.04	c : 0.02	e : 0.02	n : 0.02	v : 0.02	p : 0.02	
q : 0.54	r : 0.10	s : 0.08	e : 0.06	o : 0.06	c : 0.04	f : 0.04	d : 0.02	a : 0.02	n : 0.02	v : 0.02	
c : 0.30	e : 0.12	f : 0.10	d : 0.08	r : 0.08	g : 0.08	a : 0.06	b : 0.04	= : 0.04	s : 0.02	] : 0.02	v : 0.02	o : 0.02	i : 0.02	
c : 0.32	e : 0.14	g : 0.12	f : 0.10	d : 0.08	= : 0.06	b : 0.04	] : 0.04	4 : 0.02	s : 0.02	v : 0.02	a : 0.02	i : 0.02	
c : 0.32	e : 0.14	g : 0.14	d : 0.10	f : 0.10	= : 0.06	b : 0.04	a : 0.04	4 : 0.02	2 : 0.02	i : 0.02	
2 : 0.16	] : 0.14	g : 0.14	f : 0.12	e : 0.12	d : 0.08	c : 0.06	= : 0.06	3 : 0.04	b : 0.04	4 : 0.02	i : 0.02	
g : 0.18	2 : 0.16	] : 0.14	f : 0.08	c : 0.08	e : 0.08	d : 0.06	= : 0.06	3 : 0.04	4 : 0.04	b : 0.04	a : 0.02	i : 0.02	
g : 0.19	f : 0.16	c : 0.14	b : 0.10	= : 0.10	d : 0.06	a : 0.06	] : 0.06	3 : 0.04	2 : 0.02	e : 0.02	4 : 0.02	i : 0.02	
c : 0.19	g : 0.19	] : 0.14	f : 0.12	= : 0.12	d : 0.06	b : 0.06	2 : 0.04	3 : 0.02	4 : 0.02	i : 0.02	
g : 0.16	= : 0.16	c : 0.14	f : 0.12	2 : 0.10	] : 0.08	d : 0.06	3 : 0.06	a : 0.04	e : 0.04	4 : 0.02	i : 0.02	
= : 0.18	f : 0.14	g : 0.12	2 : 0.10	c : 0.08	4 : 0.06	3 : 0.06	a : 0.06	] : 0.06	e : 0.06	d : 0.04	F : 0.02	i : 0.02	
= : 0.18	f : 0.16	] : 0.10	g : 0.10	e : 0.08	2 : 0.08	4 : 0.06	3 : 0.06	d : 0.06	b : 0.04	c : 0.02	i : 0.02	F : 0.02	a : 0.02	
f : 0.18	= : 0.16	e : 0.14	g : 0.12	b : 0.08	c : 0.08	4 : 0.06	i : 0.04	2 : 0.04	d : 0.04	F : 0.02	3 : 0.02	a : 0.02	
e : 0.16	= : 0.16	] : 0.10	4 : 0.10	f : 0.10	c : 0.08	g : 0.08	d : 0.06	i : 0.04	b : 0.04	0 : 0.02	F : 0.02	a : 0.02	3 : 0.02	
c : 0.16	e : 0.16	= : 0.14	d : 0.08	] : 0.08	f : 0.08	4 : 0.08	i : 0.06	g : 0.06	b : 0.04	0 : 0.02	F : 0.02	2 : 0.02	
e : 0.16	c : 0.14	= : 0.14	f : 0.12	4 : 0.10	b : 0.06	d : 0.06	i : 0.06	g : 0.06	] : 0.02	0 : 0.02	F : 0.02	2 : 0.02	a : 0.02	

#score	733.5590004449978
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_UTR_m1_run1.txt

#BEAR
eeeeettttttttttteeeee	chr11:124789927-124790169(-)$1	242	22	43	25.8546
=====uuuuuuuuuuuu====	chr11:2152346-2152549(-)$1	203	116	137	23.2720
eeeeevvvvvvvvvvvvveee	chr3:149087519-149087767(-)$1	248	138	159	24.1990
eeeeevvvvvvvvvvvvveee	chr16:19514691-19514983(-)$1	292	182	203	24.1990
=====ttttttttttt=====	chr11:2151101-2151312(-)$1	211	45	66	24.0440
eeeeeuuuuuuuuuuuueeee	chr11:2153396-2153600(-)$1	204	150	171	24.8949
ffffftttttttttttfffff	chr2:27422847-27423109(-)$1	262	158	179	23.1678
eeeeettttttttttteeeee	chr11:2152708-2152913(-)$1	205	153	174	25.8546
=====uuuuuuuuuuuu====	chr11:2152331-2152533(-)$1	202	100	121	23.2720
ddddvvvvvvvvvvvvvdddd	chr5:149936588-149936849(+)$1	261	32	53	21.6910
ffffftttttttttttfffff	chr20:60963283-60963514(+)$1	231	62	83	23.1678
cccbbtttttttttttbb]cc	chr3:49136720-49136946(-)$1	226	145	166	21.9738
eeeeeuuuuuuuuuuuueeee	chr11:2153252-2153458(-)$1	206	8	29	24.8949
[cccuuuuuuuuuuuuccc]a	chr3:53260766-53260990(-)$1	224	83	104	22.0216
ffffftttttttttttfffff	chr17:40731938-40732222(-)$1	284	254	275	23.1678
eeeeettttttttttteeeee	chr11:2152672-2152874(-)$1	202	114	135	25.8546
c!!auuuuuuuuuuuua22cc	chr1:161192063-161192269(-)$1	206	146	167	21.2636
eeeeettttttttttteeeee	chr11:2154005-2154214(-)$1	209	107	128	25.8546
eeeeettttttttttteeeee	chr11:2152616-2152824(-)$1	208	64	85	25.8546
eeeeevvvvvvvvvvvvveee	chr11:2159507-2159721(-)$1	214	132	153	24.1990
eeeeettttttttttteeeee	chr12:50157994-50158238(+)$1	244	9	30	25.8546
=====uuuuuuuuuuuu====	chr11:2152297-2152506(-)$1	209	73	94	23.2720
gggggtttttttttttggggg	chr19:7113176-7113441(-)$1	265	8	29	23.6768
eeeeettttttttttteeeee	chr11:2152570-2152772(-)$1	202	12	33	25.8546
eeeeettttttttttteeeee	chr11:2153555-2153758(-)$1	203	72	93	25.8546
f[ccctttttttttttcccff	chr11:2154211-2154414(-)$1	203	105	126	23.6381
[cccvvvvvvvvvvvvvccc]	chr11:2150556-2150759(-)$1	203	9	30	22.1348
eeeeettttttttttteeeee	chr11:2153513-2153726(-)$1	213	40	61	25.8546
[ddddtttttttttttdddd]	chr16:89629220-89629431(+)$1	211	111	132	23.1346
eeeeettttttttttteeeee	chr11:2153500-2153704(-)$1	204	18	39	25.8546
eeeeevvvvvvvvvvvvveee	chr11:2159483-2159688(-)$1	205	99	120	24.1990
eeeeettttttttttteeeee	chr11:2153542-2153747(-)$1	205	61	82	25.8546
eeeeevvvvvvvvvvvvveee	chr11:2159446-2159651(-)$1	205	62	83	24.1990
eeeeeuuuuuuuuuuuueeee	chr11:2153407-2153610(-)$1	203	160	181	24.8949
=====ttttttttttt=====	chr11:2151085-2151298(-)$1	213	31	52	24.0440
eeeeeuuuuuuuuuuuueeee	chr11:2153410-2153618(-)$1	208	168	189	24.8949
[cccvvvvvvvvvvvvvccc]	chr11:2150590-2150796(-)$1	206	46	67	22.1348
eeeeettttttttttteeeee	chr11:2153590-2153794(-)$1	204	108	129	25.8546
eeeeettttttttttteeeee	chr11:2153511-2153713(-)$1	202	27	48	25.8546
eeeeettttttttttteeeee	chr11:2153623-2153840(-)$1	217	154	175	25.8546
eeeeettttttttttteeeee	chr11:2152572-2152776(-)$1	204	16	37	25.8546
=====uuuuuuuuuuuu====	chr11:2152349-2152552(-)$1	203	119	140	23.2720
eeeeettttttttttteeeee	chr11:2153995-2154198(-)$1	203	91	112	25.8546
f[ccctttttttttttcccff	chr11:2154202-2154404(-)$1	202	95	116	23.6381
f[ccctttttttttttcccff	chr11:2154222-2154425(-)$1	203	116	137	23.6381
gggggtttttttttttggggg	chr11:2151354-2151580(-)$1	226	164	185	23.6768
eeeeeuuuuuuuuuuuueeee	chr18:34378311-34378640(-)$1	329	191	212	24.8949
eeeeeuuuuuuuuuuuueeee	chr11:2153258-2153473(-)$1	215	23	44	24.8949
ccc[avvvvvvvvvvvvva]c	chr11:8706267-8706518(+)$1	251	121	142	21.8539
gggggtttttttttttggggg	chr12:120635155-120635365(-)$1	210	20	41	23.6768
eeeeettttttttttteeeee	chr11:2152584-2152786(-)$1	202	26	47	25.8546
f[ccctttttttttttcccff	chr11:2154225-2154431(-)$1	206	122	143	23.6381
=====uuuuuuuuuuuu====	chr11:2152352-2152562(-)$1	210	129	150	23.2720
f[ccctttttttttttcccff	chr11:2154259-2154461(-)$1	202	152	173	23.6381
""ccctttttttttttccc44	chr2:85823915-85824148(+)$1	233	142	163	23.1799
eeeeettttttttttteeeee	chr11:2152426-2152628(-)$1	202	6	27	25.8546
eeeeettttttttttteeeee	chr11:2152609-2152812(-)$1	203	52	73	25.8546
eeeeevvvvvvvvvvvvveee	chr11:2159432-2159634(-)$1	202	45	66	24.1990
eeeeettttttttttteeeee	chr11:2152612-2152816(-)$1	204	56	77	25.8546
f[ccctttttttttttcccff	chr11:2154204-2154411(-)$1	207	102	123	23.6381
eeeeettttttttttteeeee	chr12:123998769-123999014(-)$1	245	144	165	25.8546
eeeeettttttttttteeeee	chr11:2152582-2152784(-)$1	202	24	45	25.8546
eeeeettttttttttteeeee	chr11:2153969-2154176(-)$1	207	69	90	25.8546
[cccuuuuuuuuuuuuccc]a	chr3:53260738-53260966(-)$1	228	59	80	22.0216
eeeeettttttttttteeeee	chr17:48459715-48459970(-)$1	255	138	159	25.8546
cccvvvvvvvvvvvvvcccee	chr6:34556391-34556633(-)$1	242	136	157	21.8933
=====uuuuuuuuuuuu====	chr11:2152378-2152580(-)$1	202	147	168	23.2720
ddddduuuuuuuuuuuudddd	chr11:2160087-2160288(-)$1	201	84	105	22.1573

#otherMatches

#Seq PSSM
GGCUUCCUUACAAAACAAGCC	chr11:124789927-124790169(-)$1	242	22	43	25.8546
CACCCGUAGGGUGGGCGGGGU	chr11:2152346-2152549(-)$1	203	116	137	23.2720
ACAAUCUUCCUCUAUUUCAUU	chr3:149087519-149087767(-)$1	248	138	159	24.1990
UCACUUCUAGACUUUCACGGU	chr16:19514691-19514983(-)$1	292	182	203	24.1990
GGUCCGAAGCUCUGUGGGACC	chr11:2151101-2151312(-)$1	211	45	66	24.0440
GCAUGAAAACCAAAAUCCAUG	chr11:2153396-2153600(-)$1	204	150	171	24.8949
UCUGGUUAUAAUUGCCCCAGG	chr2:27422847-27423109(-)$1	262	158	179	23.1678
UCAUGCGCAGCACAUACAUGA	chr11:2152708-2152913(-)$1	205	153	174	25.8546
CACCCGUAGGGUGGGCGGGGU	chr11:2152331-2152533(-)$1	202	100	121	23.2720
aggcuacaugagauuuugccu	chr5:149936588-149936849(+)$1	261	32	53	21.6910
CUUUUUUUUUUUUCUUAAGGG	chr20:60963283-60963514(+)$1	231	62	83	23.1678
GGCCAUCAACAACUUCUGUGC	chr3:49136720-49136946(-)$1	226	145	166	21.9738
GCAUGAAAACCAAAAUCCAUG	chr11:2153252-2153458(-)$1	206	8	29	24.8949
CUCUCCCUCACAGAAAAGAUC	chr3:53260766-53260990(-)$1	224	83	104	22.0216
CCUGUUUUCAUGUACUGCAGG	chr17:40731938-40732222(-)$1	284	254	275	23.1678
UCAUGCGCAGCACAUACAUGA	chr11:2152672-2152874(-)$1	202	114	135	25.8546
UCCCUACCCACUCUUUGCUAC	chr1:161192063-161192269(-)$1	206	146	167	21.2636
CUGGGGCUUCUCCUGACCCAG	chr11:2154005-2154214(-)$1	209	107	128	25.8546
UCAUGCGCAGCACAUACAUGA	chr11:2152616-2152824(-)$1	208	64	85	25.8546
GUCGCACAUUCGGCCCCCGCG	chr11:2159507-2159721(-)$1	214	132	153	24.1990
CCCAGAAGGGUCAAUGUUGGG	chr12:50157994-50158238(+)$1	244	9	30	25.8546
CACCCGUAGGGUGGGCGGGGU	chr11:2152297-2152506(-)$1	209	73	94	23.2720
CAGUGAGAAAGAGAAGCACUG	chr19:7113176-7113441(-)$1	265	8	29	23.6768
UCAUGCGCAGCACAUACAUGA	chr11:2152570-2152772(-)$1	202	12	33	25.8546
GAGUCAAAUUGGCCUGGACUU	chr11:2153555-2153758(-)$1	203	72	93	25.8546
GAGGCCAAACGUCACCGUCCC	chr11:2154211-2154414(-)$1	203	105	126	23.6381
AGUGUUAUAUUCUGCCUCGCC	chr11:2150556-2150759(-)$1	203	9	30	22.1348
GAGUCAAAUUGGCCUGGACUU	chr11:2153513-2153726(-)$1	213	40	61	25.8546
AGAAGAAUUUCAAAGCCUUCG	chr16:89629220-89629431(+)$1	211	111	132	23.1346
GAGUCAAAUUGGCCUGGACUU	chr11:2153500-2153704(-)$1	204	18	39	25.8546
GUCGCACAUUCGGCCCCCGCG	chr11:2159483-2159688(-)$1	205	99	120	24.1990
GAGUCAAAUUGGCCUGGACUU	chr11:2153542-2153747(-)$1	205	61	82	25.8546
GUCGCACAUUCGGCCCCCGCG	chr11:2159446-2159651(-)$1	205	62	83	24.1990
GCAUGAAAACCAAAAUCCAUG	chr11:2153407-2153610(-)$1	203	160	181	24.8949
GGUCCGAAGCUCUGUGGGACC	chr11:2151085-2151298(-)$1	213	31	52	24.0440
GCAUGAAAACCAAAAUCCAUG	chr11:2153410-2153618(-)$1	208	168	189	24.8949
AGUGUUAUAUUCUGCCUCGCC	chr11:2150590-2150796(-)$1	206	46	67	22.1348
GAGUCAAAUUGGCCUGGACUU	chr11:2153590-2153794(-)$1	204	108	129	25.8546
GAGUCAAAUUGGCCUGGACUU	chr11:2153511-2153713(-)$1	202	27	48	25.8546
GAGUCAAAUUGGCCUGGACUU	chr11:2153623-2153840(-)$1	217	154	175	25.8546
UCAUGCGCAGCACAUACAUGA	chr11:2152572-2152776(-)$1	204	16	37	25.8546
CACCCGUAGGGUGGGCGGGGU	chr11:2152349-2152552(-)$1	203	119	140	23.2720
CUGGGGCUUCUCCUGACCCAG	chr11:2153995-2154198(-)$1	203	91	112	25.8546
GAGGCCAAACGUCACCGUCCC	chr11:2154202-2154404(-)$1	202	95	116	23.6381
GAGGCCAAACGUCACCGUCCC	chr11:2154222-2154425(-)$1	203	116	137	23.6381
UGGCCGGAGGGGAAGGGGCUA	chr11:2151354-2151580(-)$1	226	164	185	23.6768
AUGCCUUCACCAGCUAUGGCA	chr18:34378311-34378640(-)$1	329	191	212	24.8949
GCAUGAAAACCAAAAUCCAUG	chr11:2153258-2153473(-)$1	215	23	44	24.8949
GCUGCUAAAAACAAGACUGGG	chr11:8706267-8706518(+)$1	251	121	142	21.8539
AGGGUUCUCUUUAUUCACCCU	chr12:120635155-120635365(-)$1	210	20	41	23.6768
UCAUGCGCAGCACAUACAUGA	chr11:2152584-2152786(-)$1	202	26	47	25.8546
GAGGCCAAACGUCACCGUCCC	chr11:2154225-2154431(-)$1	206	122	143	23.6381
CACCCGUAGGGUGGGCGGGGU	chr11:2152352-2152562(-)$1	210	129	150	23.2720
GAGGCCAAACGUCACCGUCCC	chr11:2154259-2154461(-)$1	202	152	173	23.6381
CUGCUUCUCUUCUUCUAGCUC	chr2:85823915-85824148(+)$1	233	142	163	23.1799
AUAUCUAAGCAACUACGAUAU	chr11:2152426-2152628(-)$1	202	6	27	25.8546
UCAUGCGCAGCACAUACAUGA	chr11:2152609-2152812(-)$1	203	52	73	25.8546
GUCGCACAUUCGGCCCCCGCG	chr11:2159432-2159634(-)$1	202	45	66	24.1990
UCAUGCGCAGCACAUACAUGA	chr11:2152612-2152816(-)$1	204	56	77	25.8546
GAGGCCAAACGUCACCGUCCC	chr11:2154204-2154411(-)$1	207	102	123	23.6381
ucugcccucccucccugcagg	chr12:123998769-123999014(-)$1	245	144	165	25.8546
UCAUGCGCAGCACAUACAUGA	chr11:2152582-2152784(-)$1	202	24	45	25.8546
CUGGGGCUUCUCCUGACCCAG	chr11:2153969-2154176(-)$1	207	69	90	25.8546
CUCUCCCUCACAGAAAAGAUC	chr3:53260738-53260966(-)$1	228	59	80	22.0216
AGCCAcacaaaaucucuggcu	chr17:48459715-48459970(-)$1	255	138	159	25.8546
UGCUGAGAAGCGUGGUGCAGC	chr6:34556391-34556633(-)$1	242	136	157	21.8933
CACCCGUAGGGUGGGCGGGGU	chr11:2152378-2152580(-)$1	202	147	168	23.2720
CGCCUGUCCCCCUCCCGAGGC	chr11:2160087-2160288(-)$1	201	84	105	22.1573

#DB
(((((...........)))))	chr11:124789927-124790169(-)$1	1	22	43	25.8546
(((((............))))	chr11:2152346-2152549(-)$1	1	116	137	23.2720
(((((.............)))	chr3:149087519-149087767(-)$1	1	138	159	24.1990
(((((.............)))	chr16:19514691-19514983(-)$1	1	182	203	24.1990
(((((...........)))))	chr11:2151101-2151312(-)$1	1	45	66	24.0440
(((((............))))	chr11:2153396-2153600(-)$1	1	150	171	24.8949
(((((...........)))))	chr2:27422847-27423109(-)$1	1	158	179	23.1678
(((((...........)))))	chr11:2152708-2152913(-)$1	1	153	174	25.8546
(((((............))))	chr11:2152331-2152533(-)$1	1	100	121	23.2720
((((.............))))	chr5:149936588-149936849(+)$1	1	32	53	21.6910
(((((...........)))))	chr20:60963283-60963514(+)$1	1	62	83	23.1678
(((((...........)).))	chr3:49136720-49136946(-)$1	1	145	166	21.9738
(((((............))))	chr11:2153252-2153458(-)$1	1	8	29	24.8949
.(((............))).)	chr3:53260766-53260990(-)$1	1	83	104	22.0216
(((((...........)))))	chr17:40731938-40732222(-)$1	1	254	275	23.1678
(((((...........)))))	chr11:2152672-2152874(-)$1	1	114	135	25.8546
(..(............)..))	chr1:161192063-161192269(-)$1	1	146	167	21.2636
(((((...........)))))	chr11:2154005-2154214(-)$1	1	107	128	25.8546
(((((...........)))))	chr11:2152616-2152824(-)$1	1	64	85	25.8546
(((((.............)))	chr11:2159507-2159721(-)$1	1	132	153	24.1990
(((((...........)))))	chr12:50157994-50158238(+)$1	1	9	30	25.8546
(((((............))))	chr11:2152297-2152506(-)$1	1	73	94	23.2720
(((((...........)))))	chr19:7113176-7113441(-)$1	1	8	29	23.6768
(((((...........)))))	chr11:2152570-2152772(-)$1	1	12	33	25.8546
(((((...........)))))	chr11:2153555-2153758(-)$1	1	72	93	25.8546
(.(((...........)))))	chr11:2154211-2154414(-)$1	1	105	126	23.6381
.(((.............))).	chr11:2150556-2150759(-)$1	1	9	30	22.1348
(((((...........)))))	chr11:2153513-2153726(-)$1	1	40	61	25.8546
.((((...........)))).	chr16:89629220-89629431(+)$1	1	111	132	23.1346
(((((...........)))))	chr11:2153500-2153704(-)$1	1	18	39	25.8546
(((((.............)))	chr11:2159483-2159688(-)$1	1	99	120	24.1990
(((((...........)))))	chr11:2153542-2153747(-)$1	1	61	82	25.8546
(((((.............)))	chr11:2159446-2159651(-)$1	1	62	83	24.1990
(((((............))))	chr11:2153407-2153610(-)$1	1	160	181	24.8949
(((((...........)))))	chr11:2151085-2151298(-)$1	1	31	52	24.0440
(((((............))))	chr11:2153410-2153618(-)$1	1	168	189	24.8949
.(((.............))).	chr11:2150590-2150796(-)$1	1	46	67	22.1348
(((((...........)))))	chr11:2153590-2153794(-)$1	1	108	129	25.8546
(((((...........)))))	chr11:2153511-2153713(-)$1	1	27	48	25.8546
(((((...........)))))	chr11:2153623-2153840(-)$1	1	154	175	25.8546
(((((...........)))))	chr11:2152572-2152776(-)$1	1	16	37	25.8546
(((((............))))	chr11:2152349-2152552(-)$1	1	119	140	23.2720
(((((...........)))))	chr11:2153995-2154198(-)$1	1	91	112	25.8546
(.(((...........)))))	chr11:2154202-2154404(-)$1	1	95	116	23.6381
(.(((...........)))))	chr11:2154222-2154425(-)$1	1	116	137	23.6381
(((((...........)))))	chr11:2151354-2151580(-)$1	1	164	185	23.6768
(((((............))))	chr18:34378311-34378640(-)$1	1	191	212	24.8949
(((((............))))	chr11:2153258-2153473(-)$1	1	23	44	24.8949
(((.(.............).)	chr11:8706267-8706518(+)$1	1	121	142	21.8539
(((((...........)))))	chr12:120635155-120635365(-)$1	1	20	41	23.6768
(((((...........)))))	chr11:2152584-2152786(-)$1	1	26	47	25.8546
(.(((...........)))))	chr11:2154225-2154431(-)$1	1	122	143	23.6381
(((((............))))	chr11:2152352-2152562(-)$1	1	129	150	23.2720
(.(((...........)))))	chr11:2154259-2154461(-)$1	1	152	173	23.6381
..(((...........)))..	chr2:85823915-85824148(+)$1	1	142	163	23.1799
(((((...........)))))	chr11:2152426-2152628(-)$1	1	6	27	25.8546
(((((...........)))))	chr11:2152609-2152812(-)$1	1	52	73	25.8546
(((((.............)))	chr11:2159432-2159634(-)$1	1	45	66	24.1990
(((((...........)))))	chr11:2152612-2152816(-)$1	1	56	77	25.8546
(.(((...........)))))	chr11:2154204-2154411(-)$1	1	102	123	23.6381
(((((...........)))))	chr12:123998769-123999014(-)$1	1	144	165	25.8546
(((((...........)))))	chr11:2152582-2152784(-)$1	1	24	45	25.8546
(((((...........)))))	chr11:2153969-2154176(-)$1	1	69	90	25.8546
.(((............))).)	chr3:53260738-53260966(-)$1	1	59	80	22.0216
(((((...........)))))	chr17:48459715-48459970(-)$1	1	138	159	25.8546
(((.............)))))	chr6:34556391-34556633(-)$1	1	136	157	21.8933
(((((............))))	chr11:2152378-2152580(-)$1	1	147	168	23.2720
)((((............))))	chr11:2160087-2160288(-)$1	1	84	105	22.1573

#PSSM
e : 0.52	f : 0.13	= : 0.11	[ : 0.07	c : 0.05	g : 0.04	d : 0.02	" : 0.01	
e : 0.52	= : 0.11	c : 0.10	[ : 0.08	f : 0.04	d : 0.04	g : 0.04	! : 0.01	" : 0.01	
e : 0.52	c : 0.20	= : 0.11	f : 0.04	d : 0.04	g : 0.04	! : 0.01	
e : 0.52	c : 0.16	= : 0.11	f : 0.04	d : 0.04	g : 0.04	b : 0.01	a : 0.01	[ : 0.01	v : 0.01	
e : 0.52	= : 0.11	c : 0.10	v : 0.05	f : 0.04	u : 0.04	g : 0.04	d : 0.02	b : 0.01	a : 0.01	
t : 0.60	u : 0.23	v : 0.16	
t : 0.60	u : 0.23	v : 0.16	
t : 0.60	u : 0.23	v : 0.16	
t : 0.60	u : 0.23	v : 0.16	
t : 0.60	u : 0.23	v : 0.16	
t : 0.60	u : 0.23	v : 0.16	
t : 0.60	u : 0.23	v : 0.16	
t : 0.60	u : 0.23	v : 0.16	
t : 0.60	u : 0.23	v : 0.16	
t : 0.60	u : 0.23	v : 0.16	
t : 0.60	u : 0.23	v : 0.16	
e : 0.35	u : 0.19	v : 0.14	c : 0.14	f : 0.04	g : 0.04	= : 0.02	b : 0.01	a : 0.01	d : 0.01	
e : 0.44	c : 0.17	= : 0.11	v : 0.10	f : 0.04	d : 0.04	g : 0.04	b : 0.01	2 : 0.01	
e : 0.52	c : 0.17	= : 0.11	f : 0.04	d : 0.04	g : 0.04	] : 0.01	2 : 0.01	a : 0.01	
e : 0.54	f : 0.13	= : 0.11	c : 0.05	d : 0.04	] : 0.04	g : 0.04	4 : 0.01	
e : 0.54	f : 0.13	= : 0.11	c : 0.04	g : 0.04	] : 0.04	d : 0.02	a : 0.02	4 : 0.01	

#score	1650.6205362692217
#seq	68
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF938JQE_WRN_CDS_m3_run2.txt

#BEAR
++++++dddd[eeeeemmmmeeeee]ddddggggggg	chr10:79793520-79793765(+)$1	245	107	144	15.4402
$$$==============lll==============eee	chr11:62293169-62293424(-)$1	255	159	196	15.1231
a]a:eeeee[bb[cccmmmmccc]bb]eeeee:ccc!	chr11:75115614-75115831(+)$1	217	104	141	11.4880
++++eeeee"""eeeeellleeeeeeeeee333eeee	chr4:39460410-39460632(-)$1	222	171	208	17.9227
eeeeedddd[a[ddddnnnnndddd]a]dddd]eeee	chr20:62597553-62597756(-)$1	203	68	105	13.1304
c####dddd[eeeeennnnneeeee]dddd4444ccc	chr4:39459954-39460161(-)$1	207	142	179	15.7569
))))ggggggg!!cccmmmmcccgggggggeeeee]a	chr17:26919409-26919658(-)$1	249	36	73	14.6554

#otherMatches

#Seq PSSM
CCUCCUUGGCUGUCUGAAGAUAGAUCGCCAUCAUGGU	chr10:79793520-79793765(+)$1	245	107	144	15.4402
AAGUGGACAUUGAUGUCCCAGAUGUUAAUGUUCAGGG	chr11:62293169-62293424(-)$1	255	159	196	15.1231
UGCUGGGCAUCAAGGUGAAGAUCAUGCUGCCCUGGGA	chr11:75115614-75115831(+)$1	217	104	141	11.4880
GCUCUGGGAAAGGCUGCGGCGCGGCUCCCACUCUCGG	chr4:39460410-39460632(-)$1	222	171	208	17.9227
GCUUGUGACAGUUACGAAACCCGUGCCGGUCACCAAG	chr20:62597553-62597756(-)$1	203	68	105	13.1304
AAAAUGGUAUGAGACUUGAUGUCUUUUACUUACAUCU	chr4:39459954-39460161(-)$1	207	142	179	15.7569
CUACAUUGCUCCAAGGAAAGCCUGAGCAGUAGAACUG	chr17:26919409-26919658(-)$1	249	36	73	14.6554

#DB
......((((.(((((....))))).)))))))))))	chr10:79793520-79793765(+)$1	1	107	144	15.4402
...((((((((((((((...)))))))))))))))))	chr11:62293169-62293424(-)$1	1	159	196	15.1231
).).(((((.((.(((....))).)).))))).(((.	chr11:75115614-75115831(+)$1	1	104	141	11.4880
....(((((...(((((...))))))))))...))))	chr4:39460410-39460632(-)$1	1	171	208	17.9227
(((((((((.(.((((.....)))).).)))).))))	chr20:62597553-62597756(-)$1	1	68	105	13.1304
(....((((.(((((.....))))).))))....)))	chr4:39459954-39460161(-)$1	1	142	179	15.7569
....(((((((..(((....))))))))))))))).)	chr17:26919409-26919658(-)$1	1	36	73	14.6554

#PSSM
+ : 0.28	$ : 0.14	a : 0.14	e : 0.14	c : 0.14	) : 0.14	
+ : 0.28	$ : 0.14	] : 0.14	e : 0.14	# : 0.14	) : 0.14	
+ : 0.28	$ : 0.14	a : 0.14	e : 0.14	# : 0.14	) : 0.14	
+ : 0.28	= : 0.14	: : 0.14	e : 0.14	# : 0.14	) : 0.14	
e : 0.42	+ : 0.14	= : 0.14	# : 0.14	g : 0.14	
e : 0.28	d : 0.28	+ : 0.14	= : 0.14	g : 0.14	
d : 0.42	e : 0.28	= : 0.14	g : 0.14	
d : 0.42	e : 0.28	= : 0.14	g : 0.14	
d : 0.42	e : 0.28	= : 0.14	g : 0.14	
[ : 0.42	d : 0.14	= : 0.14	" : 0.14	g : 0.14	
[ : 0.14	= : 0.14	b : 0.14	" : 0.14	a : 0.14	e : 0.14	g : 0.14	
e : 0.28	= : 0.14	b : 0.14	" : 0.14	[ : 0.14	! : 0.14	
e : 0.42	= : 0.14	[ : 0.14	d : 0.14	! : 0.14	
e : 0.42	c : 0.28	= : 0.14	d : 0.14	
e : 0.42	c : 0.28	= : 0.14	d : 0.14	
e : 0.28	c : 0.28	= : 0.14	d : 0.14	n : 0.14	
m : 0.42	n : 0.28	= : 0.14	e : 0.14	
m : 0.42	l : 0.28	n : 0.28	
m : 0.42	l : 0.28	n : 0.28	
m : 0.42	l : 0.28	n : 0.28	
e : 0.42	c : 0.28	= : 0.14	n : 0.14	
e : 0.42	c : 0.28	= : 0.14	d : 0.14	
e : 0.42	c : 0.28	= : 0.14	d : 0.14	
e : 0.42	= : 0.14	] : 0.14	d : 0.14	g : 0.14	
e : 0.42	= : 0.14	b : 0.14	d : 0.14	g : 0.14	
] : 0.42	= : 0.14	b : 0.14	e : 0.14	g : 0.14	
d : 0.28	= : 0.14	] : 0.14	e : 0.14	a : 0.14	g : 0.14	
d : 0.28	e : 0.28	= : 0.14	] : 0.14	g : 0.14	
d : 0.42	e : 0.28	= : 0.14	g : 0.14	
d : 0.42	e : 0.28	= : 0.14	g : 0.14	
e : 0.28	g : 0.14	= : 0.14	3 : 0.14	d : 0.14	4 : 0.14	
e : 0.28	g : 0.14	= : 0.14	3 : 0.14	d : 0.14	4 : 0.14	
g : 0.14	= : 0.14	: : 0.14	3 : 0.14	] : 0.14	4 : 0.14	e : 0.14	
e : 0.42	g : 0.14	= : 0.14	c : 0.14	4 : 0.14	
e : 0.57	c : 0.28	g : 0.14	
e : 0.42	c : 0.28	g : 0.14	] : 0.14	
e : 0.42	g : 0.14	! : 0.14	c : 0.14	a : 0.14	

#score	103.51705098652866
#seq	7
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800GPC_DDX21_UTR_m2_run2.txt

#BEAR
d:ggggggg!!ddddrrrrrrrrrddddgggggg	chr11:122929530-122929741(-)$1	211	38	72	15.3417
BBhhhhhhhh[dddd[cccnnnnnccc]dddd]h	chr11:122929979-122930223(-)$1	244	184	218	18.1127
##ggggggg!!ddddrrrrrrrrrddddgggggg	chr11:122929515-122929718(-)$1	203	15	49	15.9091
b[hhhhhhhh[dddd[cccnnnnnccc]dddd]h	chr11:122929940-122930179(-)$1	239	140	174	17.9654
::eeeee[bb[ddddabboooooobb]a]ddddb	chr7:151845069-151845315(-)$1	246	194	228	14.0697
gggg!!dddd[dddd[bbnnnnnbbdddd]dddd	chr19:8550833-8551095(+)$1	262	218	252	14.8207
BBggggggga[dddd[eeeeeooooooeeeee88	chr3:10362532-10362784(-)$1	252	129	163	13.4270

#otherMatches

#Seq PSSM
ucgcuaugaugauggauuccaaaaccauucguag	chr11:122929530-122929741(-)$1	211	38	72	15.3417
AUAGUUAAAACAGGAGCUAUGUACUGGGUUUUCU	chr11:122929979-122930223(-)$1	244	184	218	18.1127
ucgcuaugaugauggauuccaaaaccauucguag	chr11:122929515-122929718(-)$1	203	15	49	15.9091
AUAGUUAAAACAGGAGCUAUGUACUGGGUUUUCU	chr11:122929940-122930179(-)$1	239	140	174	17.9654
AAAGGUAACGUCUGCCGUUCACAUGCUGUGCAGU	chr7:151845069-151845315(-)$1	246	194	228	14.0697
CCUGGAGCGCAUGGGUGCCAACAGCCUCGAGCGC	chr19:8550833-8551095(+)$1	262	218	252	14.8207
UCCCAAAUCCCAAGCUGGAGCCGUUCAGCUCCCC	chr3:10362532-10362784(-)$1	252	129	163	13.4270

#DB
).(((((((..((((.........))))))))))	chr11:122929530-122929741(-)$1	1	38	72	15.3417
))((((((((.((((.(((.....))).)))).)	chr11:122929979-122930223(-)$1	1	184	218	18.1127
..(((((((..((((.........))))))))))	chr11:122929515-122929718(-)$1	1	15	49	15.9091
(.((((((((.((((.(((.....))).)))).)	chr11:122929940-122930179(-)$1	1	140	174	17.9654
..(((((.((.(((((((......)).).)))))	chr7:151845069-151845315(-)$1	1	194	228	14.0697
((((..((((.((((.((.....)))))).))))	chr19:8550833-8551095(+)$1	1	218	252	14.8207
((((((((((.((((.(((((......)))))..	chr3:10362532-10362784(-)$1	1	129	163	13.4270

#PSSM
B : 0.28	d : 0.14	# : 0.14	b : 0.14	: : 0.14	g : 0.14	
: : 0.28	B : 0.28	# : 0.14	[ : 0.14	g : 0.14	
g : 0.57	h : 0.28	e : 0.14	
g : 0.57	h : 0.28	e : 0.14	
g : 0.42	h : 0.28	e : 0.14	! : 0.14	
g : 0.42	h : 0.28	e : 0.14	! : 0.14	
g : 0.42	h : 0.28	e : 0.14	d : 0.14	
g : 0.42	h : 0.28	[ : 0.14	d : 0.14	
g : 0.42	h : 0.28	b : 0.14	d : 0.14	
! : 0.28	h : 0.28	b : 0.14	d : 0.14	a : 0.14	
[ : 0.71	! : 0.28	
d : 0.99	
d : 0.99	
d : 0.99	
d : 0.99	
[ : 0.57	r : 0.28	a : 0.14	
r : 0.28	c : 0.28	b : 0.28	e : 0.14	
r : 0.28	c : 0.28	b : 0.28	e : 0.14	
r : 0.28	c : 0.28	o : 0.14	n : 0.14	e : 0.14	
n : 0.42	r : 0.28	o : 0.14	e : 0.14	
n : 0.42	r : 0.28	o : 0.14	e : 0.14	
n : 0.42	r : 0.28	o : 0.28	
n : 0.42	r : 0.28	o : 0.28	
r : 0.28	n : 0.28	o : 0.28	b : 0.14	
d : 0.28	c : 0.28	b : 0.28	o : 0.14	
d : 0.42	c : 0.28	b : 0.14	o : 0.14	
d : 0.42	c : 0.28	] : 0.14	o : 0.14	
d : 0.42	] : 0.28	a : 0.14	e : 0.14	
d : 0.42	g : 0.28	] : 0.14	e : 0.14	
d : 0.42	g : 0.28	] : 0.14	e : 0.14	
d : 0.57	g : 0.28	e : 0.14	
d : 0.57	g : 0.28	e : 0.14	
g : 0.28	] : 0.28	d : 0.28	8 : 0.14	
g : 0.28	h : 0.28	b : 0.14	d : 0.14	8 : 0.14	

#score	109.64669901737147
#seq	7
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_CDS_m3_run2.txt

#BEAR
ggggggguuuuuuuuuuuugggggg	chr12:56568429-56568679(-)$1	250	200	225	23.8142
%%ddddvvvvvvvvvvvvvdddd66	chr11:65359076-65359337(+)$1	261	121	146	20.2259
!!eeeeewwwwwwwwwwwwwweeee	chrX:44935829-44936082(+)$1	253	38	63	21.9983
""fffffftttttttttttffffff	chr1:247065828-247066128(-)$1	300	143	168	22.4577
hhhhhhhvvvvvvvvvvvvvhhhhh	chr4:39826960-39827261(-)$1	301	39	64	21.5799
ddddyyyyyyyyyyyyyyyydddde	chr1:31734371-31734634(-)$1	263	181	206	20.9732
c[eeeeevvvvvvvvvvvvveeeee	chr16:87782298-87782559(-)$1	261	120	145	23.4200
eeeeyyyyyyyyyyyyyyyyeeeee	chr1:76198178-76198475(+)$1	297	163	188	21.3312
dd!!ddddtttttttttttdddd22	chr18:33734666-33734934(+)$1	268	56	81	22.7646
ggggggguuuuuuuuuuuugggggg	chr2:54155321-54155599(-)$1	278	125	150	23.8142
b[eeeeevvvvvvvvvvvvveeeee	chr16:88777892-88778149(+)$1	257	127	152	23.1874
iiiiiiiitttttttttttiiiiii	chr2:27656689-27656959(+)$1	270	13	38	23.2315
fffcccwwwwwwwwwwwwwwccc]f	chr4:74007987-74008235(-)$1	248	7	32	22.3732
ggg[ddddtttttttttttdddd22	chr3:45052562-45052850(+)$1	288	233	258	23.0240
fff[bb[attttttttttta]bb]f	chr12:122999513-122999917(-)$1	404	133	158	22.9559
""fffffftttttttttttffffff	chr4:109543113-109543377(+)$1	264	200	225	22.4577
ddd!!ccctttttttttttccc22d	chr2:160620986-160621269(+)$1	283	137	162	22.7784
dcccyyyyyyyyyyyyyyyyccc]d	chr19:36640530-36640756(+)$1	226	82	107	21.7731
ffffffvvvvvvvvvvvvvffffff	chr6:31827922-31828186(-)$1	264	120	145	22.1105
gggggggvvvvvvvvvvvvvggggg	chr3:49138767-49139016(-)$1	249	193	218	23.9304
gggggggvvvvvvvvvvvvvggggg	chr7:131081905-131082162(+)$1	257	205	230	23.9304
""eeeeeuuuuuuuuuuuueeeee3	chr17:49357243-49357511(+)$1	268	20	45	23.4559
dddd[bbwwwwwwwwwwwwwwbb]d	chr3:185376079-185376347(-)$1	268	238	263	20.6752
g"""ddddtttttttttttdddd33	chr5:140963053-140963336(-)$1	283	209	234	23.2697
iiiiiiivvvvvvvvvvvvviiiii	chr4:128812131-128812420(+)$1	289	77	102	23.8182
ffffffvvvvvvvvvvvvvffffff	chr10:91470567-91470832(+)$1	265	168	193	22.1105
%%%%dddduuuuuuuuuuuudddd9	chr17:17171152-17171439(-)$1	287	158	183	19.5155
cc[ccc[attttttttttta]ccc]	chr6:131913460-131913720(-)$1	260	189	214	23.9926
eee[bb[bbuuuuuuuuuuuubb]b	chr19:3055618-3055880(-)$1	262	150	175	19.3545
ffffffvvvvvvvvvvvvvffffff	chr11:63403678-63403977(-)$1	299	173	198	22.1105
####ddddvvvvvvvvvvvvvdddd	chr17:80583236-80583510(-)$1	274	223	248	21.8759
:ffffffuuuuuuuuuuuuffffff	chr22:19124839-19125089(-)$1	250	5	30	21.7580
:gggggggtttttttttttgggggg	chr17:65147212-65147499(-)$1	287	175	200	22.3687
========ttttttttttt======	chr2:20512058-20512301(-)$1	243	23	48	23.5949
dddyyyyyyyyyyyyyyyydddd22	chr2:187500663-187500962(+)$1	299	227	252	20.1728
eeeeeeeeuuuuuuuuuuuueeeee	chr6:122773086-122773358(-)$1	272	167	192	22.5951
dd[eeeeettttttttttteeeee]	chr1:160323740-160324048(+)$1	308	13	38	22.8842
Gccc[ccctttttttttttcccccc	chr5:56542745-56543033(+)$1	288	194	219	22.9146
ggggggguuuuuuuuuuuugggggg	chr12:50395943-50396211(-)$1	268	192	217	23.8142
ccc[cccuuuuuuuuuuuucccccc	chr1:169349567-169349855(+)$1	288	80	105	23.8423
hhhhhhhhuuuuuuuuuuuuhhhhh	chr21:44524389-44524669(-)$1	280	224	249	20.8387
ffff[cccuuuuuuuuuuuuccc]f	chr1:31422999-31423255(-)$1	256	177	202	23.4029
ddd[cccuuuuuuuuuuuucccddd	chr3:98309413-98309658(-)$1	245	94	119	23.2965
dddyyyyyyyyyyyyyyyydddd:d	chr12:104326469-104326717(+)$1	248	67	92	19.2164
dd[dddduuuuuuuuuuuudddd]d	chr7:74119364-74119649(+)$1	285	89	114	23.0602
cc!!dddduuuuuuuuuuuudddd3	chr16:84214960-84215215(-)$1	255	85	110	23.1081
f[a[cccwwwwwwwwwwwwwwccca	chr17:27438745-27438989(-)$1	244	204	229	22.2335
c[eeeeevvvvvvvvvvvvveeeee	chr6:134491461-134491728(-)$1	267	176	201	23.4200
gggggggvvvvvvvvvvvvvggggg	chr1:55537461-55537763(-)$1	302	142	167	23.9304
"a[eeeeettttttttttteeeee]	chr17:73626223-73626553(-)$1	330	252	277	23.0836
"cccyyyyyyyyyyyyyyyyccc]c	chr16:67904547-67904807(+)$1	260	129	154	22.0008
ggggyyyyyyyyyyyyyyyyggggg	chr12:57883866-57884123(+)$1	257	149	174	22.0966
ii!!ddddtttttttttttdddd]i	chrX:41075003-41075256(+)$1	253	78	103	23.4261
fffffbbtttttttttttbb]ffff	chr9:123624901-123625164(-)$1	263	153	178	20.7589
b"""cccvvvvvvvvvvvvvccc33	chr7:99755437-99755716(-)$1	279	186	211	23.8924
f"""cccvvvvvvvvvvvvvccc]f	chr20:32681334-32681587(-)$1	253	165	190	24.0302
ccceeeeettttttttttteeeee]	chr8:27294488-27294748(+)$1	260	199	224	22.9504
gggggggwwwwwwwwwwwwwwgggg	chr12:53345362-53345630(+)$1	268	0	25	22.4043

#otherMatches

#Seq PSSM
CGCCUGCCGCCGAAACCUAGCGGGU	chr12:56568429-56568679(-)$1	250	200	225	23.8142
CUGGGCACUCUCUCCCUACGCCCCU	chr11:65359076-65359337(+)$1	261	121	146	20.2259
UUCAGGAUUCUUUUUUUUUUUUUCU	chrX:44935829-44936082(+)$1	253	38	63	21.9983
UGUUACAGGGGUUAGAAUACUGUGA	chr1:247065828-247066128(-)$1	300	143	168	22.4577
uuuaaaaaaaaaaaaaaaGAUUUUA	chr4:39826960-39827261(-)$1	301	39	64	21.5799
GCAGGAGAAUAUUGUAUAAGCUGCC	chr1:31734371-31734634(-)$1	263	181	206	20.9732
GACCUGUCACCUUUCUUUUCACAGG	chr16:87782298-87782559(-)$1	261	120	145	23.4200
GCAGAAAGAAUUUCAAGCUACUGCU	chr1:76198178-76198475(+)$1	297	163	188	21.3312
UUUAGUCUUCUCUGUUAUCAGACGU	chr18:33734666-33734934(+)$1	268	56	81	22.7646
UGGAGACUUUAAAAAUUCUGUUUUC	chr2:54155321-54155599(-)$1	278	125	150	23.8142
GUCCCUGCUGCUUCUCCCUCUAGGG	chr16:88777892-88778149(+)$1	257	127	152	23.1874
ACACUGAUGUUAGAGAGGAAUUGGU	chr2:27656689-27656959(+)$1	270	13	38	23.2315
AAGCGUUCUUUACCAAACCUAUGAU	chr4:74007987-74008235(-)$1	248	7	32	22.3732
GGGCCCAAGAGACAGAAAGUUGGAU	chr3:45052562-45052850(+)$1	288	233	258	23.0240
UUUACUACAGAGAUAGAAAGAAGAG	chr12:122999513-122999917(-)$1	404	133	158	22.9559
AAGCACCAAAAUCUGCAUGUGGUGU	chr4:109543113-109543377(+)$1	264	200	225	22.4577
GCAUUGUUUCUAGUUUAUUAACCUU	chr2:160620986-160621269(+)$1	283	137	162	22.7784
GCAGUCCCCUUCCUCCUAUUUUGCC	chr19:36640530-36640756(+)$1	226	82	107	21.7731
CUGAGGUCCUGUCCUCUCCCCUCAG	chr6:31827922-31828186(-)$1	264	120	145	22.1105
GCCAAAGCCAUCAAUUUCAACUUUG	chr3:49138767-49139016(-)$1	249	193	218	23.9304
ACCUUGUCUCAACUGGUAUAGCAAG	chr7:131081905-131082162(+)$1	257	205	230	23.9304
CACUUACGUAUUUUAAAAAGUAAGA	chr17:49357243-49357511(+)$1	268	20	45	23.4559
AGCCGCACCUGCCACUUCUCCUGGG	chr3:185376079-185376347(-)$1	268	238	263	20.6752
GGUCAGGCUUGCGGGAUAUGCCUCU	chr5:140963053-140963336(-)$1	283	209	234	23.2697
AAGAAUUAUUACUGAUUUUGGGUUU	chr4:128812131-128812420(+)$1	289	77	102	23.8182
GCAUUCUGCCUCGAACUUUGAAUGU	chr10:91470567-91470832(+)$1	265	168	193	22.1105
GAAUUGGCAUCCUUAAGCAAGCCAU	chr17:17171152-17171439(-)$1	287	158	183	19.5155
ACCAGUGAGUUAAUAAUUGUGAUUU	chr6:131913460-131913720(-)$1	260	189	214	23.9926
UUCCAGGCUGAGAUCGUCAAAAGGC	chr19:3055618-3055880(-)$1	262	150	175	19.3545
AUUGCUGGUGAAUUCAAAGAGCAGU	chr11:63403678-63403977(-)$1	299	173	198	22.1105
CGAAACCUGCUAUAACCCCAAAGGU	chr17:80583236-80583510(-)$1	274	223	248	21.8759
GAGUCCUGGGGAAGGAGAGAGGGCU	chr22:19124839-19125089(-)$1	250	5	30	21.7580
CGCUGGGUAAAGACUGUCCACCCAG	chr17:65147212-65147499(-)$1	287	175	200	22.3687
UGUGCUGAUUUUUCUUACUUCAGUA	chr2:20512058-20512301(-)$1	243	23	48	23.5949
AGCAACUCGGACUGCACAAGCUAUU	chr2:187500663-187500962(+)$1	299	227	252	20.1728
GCUACAGCUCUGAAUUAUCUGCUGU	chr6:122773086-122773358(-)$1	272	167	192	22.5951
UUGGUCCCAAAAGGCUUGAGGGAUA	chr1:160323740-160324048(+)$1	308	13	38	22.8842
UGGAACUUCUUUCCCUCAUGAGUCC	chr5:56542745-56543033(+)$1	288	194	219	22.9146
UUUGUUUAGUCUUUUUUUAAAACAA	chr12:50395943-50396211(-)$1	268	192	217	23.8142
AGUAGUAUAUUCAAUUUUUUACACU	chr1:169349567-169349855(+)$1	288	80	105	23.8423
AAUAAACCGACGUUUAGCCAGGUUU	chr21:44524389-44524669(-)$1	280	224	249	20.8387
GCAGAACGGAUUCGAGGCCACGUCC	chr1:31422999-31423255(-)$1	256	177	202	23.4029
GGGCGUGAGCUCUGUUAUCCACCCC	chr3:98309413-98309658(-)$1	245	94	119	23.2965
CAUAAAAUCGAAUAUCUUAAUGCAU	chr12:104326469-104326717(+)$1	248	67	92	19.2164
AAUGUUGAAAAACUAACUCCAAUUU	chr7:74119364-74119649(+)$1	285	89	114	23.0602
ACCCUUGAGCCCCUUCCCCAUCAGC	chr16:84214960-84215215(-)$1	255	85	110	23.1081
GAGCGCCUUUUCUCCUAUUAUGGCC	chr17:27438745-27438989(-)$1	244	204	229	22.2335
CACUUUGACCCCGAGUUUACCGAAG	chr6:134491461-134491728(-)$1	267	176	201	23.4200
GUCUUGUGUUUGAAUCUUCUGCAGG	chr1:55537461-55537763(-)$1	302	142	167	23.9304
AGGUGGCCAACCUCUACAAGGCCAG	chr17:73626223-73626553(-)$1	330	252	277	23.0836
CUGAAUCCUCUUUUCUCUCCUCAUA	chr16:67904547-67904807(+)$1	260	129	154	22.0008
UUCCAGACACUGAGUACCCAGGAAC	chr12:57883866-57884123(+)$1	257	149	174	22.0966
GCUUGGGGUUUUUUUUUUUUUCCUG	chrX:41075003-41075256(+)$1	253	78	103	23.4261
GAGAUCAAGAAGAAGAAGUGCAUCU	chr9:123624901-123625164(-)$1	263	153	178	20.7589
AUGAGGUCAUCUUCCCACUCACCGU	chr7:99755437-99755716(-)$1	279	186	211	23.8924
UGAAAAGGAUAUGUAACACACUUAG	chr20:32681334-32681587(-)$1	253	165	190	24.0302
CUCUGGACAACAAGGAGAAGUUCAU	chr8:27294488-27294748(+)$1	260	199	224	22.9504
CCGGGCCCAAUAUGACGAGCUGGCU	chr12:53345362-53345630(+)$1	268	0	25	22.4043

#DB
(((((((............))))))	chr12:56568429-56568679(-)$1	1	200	225	23.8142
..((((.............))))..	chr11:65359076-65359337(+)$1	1	121	146	20.2259
..(((((..............))))	chrX:44935829-44936082(+)$1	1	38	63	21.9983
..((((((...........))))))	chr1:247065828-247066128(-)$1	1	143	168	22.4577
(((((((.............)))))	chr4:39826960-39827261(-)$1	1	39	64	21.5799
((((................))))(	chr1:31734371-31734634(-)$1	1	181	206	20.9732
(.(((((.............)))))	chr16:87782298-87782559(-)$1	1	120	145	23.4200
((((................)))))	chr1:76198178-76198475(+)$1	1	163	188	21.3312
((..((((...........))))..	chr18:33734666-33734934(+)$1	1	56	81	22.7646
(((((((............))))))	chr2:54155321-54155599(-)$1	1	125	150	23.8142
(.(((((.............)))))	chr16:88777892-88778149(+)$1	1	127	152	23.1874
((((((((...........))))))	chr2:27656689-27656959(+)$1	1	13	38	23.2315
((((((..............))).)	chr4:74007987-74008235(-)$1	1	7	32	22.3732
(((.((((...........))))..	chr3:45052562-45052850(+)$1	1	233	258	23.0240
(((.((.(...........).)).)	chr12:122999513-122999917(-)$1	1	133	158	22.9559
..((((((...........))))))	chr4:109543113-109543377(+)$1	1	200	225	22.4577
(((..(((...........)))..)	chr2:160620986-160621269(+)$1	1	137	162	22.7784
((((................))).)	chr19:36640530-36640756(+)$1	1	82	107	21.7731
((((((.............))))))	chr6:31827922-31828186(-)$1	1	120	145	22.1105
(((((((.............)))))	chr3:49138767-49139016(-)$1	1	193	218	23.9304
(((((((.............)))))	chr7:131081905-131082162(+)$1	1	205	230	23.9304
..(((((............))))).	chr17:49357243-49357511(+)$1	1	20	45	23.4559
((((.((..............)).)	chr3:185376079-185376347(-)$1	1	238	263	20.6752
(...((((...........))))..	chr5:140963053-140963336(-)$1	1	209	234	23.2697
(((((((.............)))))	chr4:128812131-128812420(+)$1	1	77	102	23.8182
((((((.............))))))	chr10:91470567-91470832(+)$1	1	168	193	22.1105
....((((............)))).	chr17:17171152-17171439(-)$1	1	158	183	19.5155
((.(((.(...........).))).	chr6:131913460-131913720(-)$1	1	189	214	23.9926
(((.((.((............)).)	chr19:3055618-3055880(-)$1	1	150	175	19.3545
((((((.............))))))	chr11:63403678-63403977(-)$1	1	173	198	22.1105
....((((.............))))	chr17:80583236-80583510(-)$1	1	223	248	21.8759
.((((((............))))))	chr22:19124839-19125089(-)$1	1	5	30	21.7580
.(((((((...........))))))	chr17:65147212-65147499(-)$1	1	175	200	22.3687
((((((((...........))))))	chr2:20512058-20512301(-)$1	1	23	48	23.5949
(((................))))..	chr2:187500663-187500962(+)$1	1	227	252	20.1728
((((((((............)))))	chr6:122773086-122773358(-)$1	1	167	192	22.5951
((.(((((...........))))).	chr1:160323740-160324048(+)$1	1	13	38	22.8842
((((.(((...........))))))	chr5:56542745-56543033(+)$1	1	194	219	22.9146
(((((((............))))))	chr12:50395943-50396211(-)$1	1	192	217	23.8142
(((.(((............))))))	chr1:169349567-169349855(+)$1	1	80	105	23.8423
((((((((............)))))	chr21:44524389-44524669(-)$1	1	224	249	20.8387
((((.(((............))).)	chr1:31422999-31423255(-)$1	1	177	202	23.4029
(((.(((............))))))	chr3:98309413-98309658(-)$1	1	94	119	23.2965
(((................)))).(	chr12:104326469-104326717(+)$1	1	67	92	19.2164
((.((((............)))).)	chr7:74119364-74119649(+)$1	1	89	114	23.0602
((..((((............)))).	chr16:84214960-84215215(-)$1	1	85	110	23.1081
(.(.(((..............))))	chr17:27438745-27438989(-)$1	1	204	229	22.2335
(.(((((.............)))))	chr6:134491461-134491728(-)$1	1	176	201	23.4200
(((((((.............)))))	chr1:55537461-55537763(-)$1	1	142	167	23.9304
.(.(((((...........))))).	chr17:73626223-73626553(-)$1	1	252	277	23.0836
.(((................))).)	chr16:67904547-67904807(+)$1	1	129	154	22.0008
((((................)))))	chr12:57883866-57884123(+)$1	1	149	174	22.0966
((..((((...........)))).)	chrX:41075003-41075256(+)$1	1	78	103	23.4261
(((((((...........)).))))	chr9:123624901-123625164(-)$1	1	153	178	20.7589
(...(((.............)))..	chr7:99755437-99755716(-)$1	1	186	211	23.8924
(...(((.............))).)	chr20:32681334-32681587(-)$1	1	165	190	24.0302
((((((((...........))))).	chr8:27294488-27294748(+)$1	1	199	224	22.9504
(((((((..............))))	chr12:53345362-53345630(+)$1	1	0	25	22.4043

#PSSM
g : 0.17	d : 0.17	f : 0.15	c : 0.10	" : 0.08	e : 0.05	i : 0.05	% : 0.03	h : 0.03	b : 0.03	: : 0.03	! : 0.01	# : 0.01	= : 0.01	G : 0.01	
g : 0.17	d : 0.15	f : 0.13	c : 0.12	" : 0.10	[ : 0.06	e : 0.05	i : 0.05	% : 0.03	h : 0.03	! : 0.01	# : 0.01	= : 0.01	a : 0.01	
g : 0.17	f : 0.17	e : 0.13	d : 0.12	c : 0.08	[ : 0.06	! : 0.05	" : 0.05	h : 0.03	i : 0.03	% : 0.01	# : 0.01	= : 0.01	a : 0.01	
e : 0.17	g : 0.15	f : 0.13	[ : 0.10	c : 0.08	d : 0.06	! : 0.06	" : 0.05	h : 0.03	i : 0.03	y : 0.03	% : 0.01	# : 0.01	= : 0.01	
d : 0.15	e : 0.15	g : 0.13	f : 0.12	y : 0.12	c : 0.12	[ : 0.05	h : 0.03	i : 0.03	b : 0.03	! : 0.01	= : 0.01	
c : 0.17	d : 0.15	e : 0.15	g : 0.13	y : 0.12	f : 0.10	b : 0.06	h : 0.03	i : 0.03	= : 0.01	
e : 0.15	g : 0.13	d : 0.13	c : 0.13	y : 0.12	v : 0.06	f : 0.05	[ : 0.05	h : 0.03	i : 0.03	b : 0.03	w : 0.01	= : 0.01	
v : 0.24	u : 0.13	y : 0.12	d : 0.12	w : 0.08	e : 0.06	c : 0.05	f : 0.03	a : 0.03	i : 0.01	b : 0.01	g : 0.01	= : 0.01	h : 0.01	t : 0.01	
t : 0.29	v : 0.25	u : 0.22	y : 0.12	w : 0.08	b : 0.01	
t : 0.29	v : 0.25	u : 0.24	y : 0.12	w : 0.08	
t : 0.29	v : 0.25	u : 0.24	y : 0.12	w : 0.08	
t : 0.29	v : 0.25	u : 0.24	y : 0.12	w : 0.08	
t : 0.29	v : 0.25	u : 0.24	y : 0.12	w : 0.08	
t : 0.29	v : 0.25	u : 0.24	y : 0.12	w : 0.08	
t : 0.29	v : 0.25	u : 0.24	y : 0.12	w : 0.08	
t : 0.29	v : 0.25	u : 0.24	y : 0.12	w : 0.08	
t : 0.29	v : 0.25	u : 0.24	y : 0.12	w : 0.08	
t : 0.29	v : 0.25	u : 0.24	y : 0.12	w : 0.08	
t : 0.27	v : 0.25	u : 0.24	y : 0.12	w : 0.08	b : 0.01	
v : 0.18	d : 0.13	f : 0.10	u : 0.10	w : 0.08	y : 0.08	g : 0.06	c : 0.06	e : 0.06	a : 0.03	i : 0.01	= : 0.01	b : 0.01	
d : 0.18	c : 0.17	e : 0.15	g : 0.13	f : 0.10	w : 0.06	] : 0.05	h : 0.03	i : 0.03	u : 0.01	v : 0.01	= : 0.01	
d : 0.20	c : 0.20	e : 0.17	g : 0.15	f : 0.12	b : 0.05	h : 0.03	i : 0.03	= : 0.01	
d : 0.22	e : 0.17	c : 0.17	g : 0.15	f : 0.12	b : 0.05	h : 0.03	i : 0.03	2 : 0.01	= : 0.01	
e : 0.17	] : 0.17	g : 0.15	f : 0.12	d : 0.08	2 : 0.06	c : 0.06	h : 0.03	i : 0.03	3 : 0.03	6 : 0.01	= : 0.01	: : 0.01	
f : 0.18	g : 0.15	e : 0.12	d : 0.12	3 : 0.06	] : 0.06	2 : 0.05	i : 0.05	c : 0.05	h : 0.03	6 : 0.01	9 : 0.01	b : 0.01	= : 0.01	a : 0.01	

#score	1305.4078991954937
#seq	58
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_transcript_m2_run2.txt

#BEAR
$$ccc[bb[cccnnnnnccc]bbccc333cc	chr2:38812687-38813035(-)$1	348	100	131	14.2844
=[gggggggcccnnnnnccc4444ggggggg	chrX:103434274-103434543(+)$1	269	182	213	15.4454
ii[bba[eeeeennnnneeeee]a]bb]iii	chr19:13065154-13065401(-)$1	247	10	41	12.1761
!!ffffff!!bbnnnnnbb22ffffffffff	chr7:91603010-91603245(+)$1	235	22	53	13.1601
dddd!!bb!!bbnnnnnbb22bb]ddddbb3	chr5:151174935-151175206(+)$1	271	220	251	12.4948
bdddd!!eeeeennnnneeeee4444dddd]	chr11:3734974-3735300(-)$1	326	93	124	11.6323
cceeeee!!cccnnnnnccceeeee]ccc]c	chr1:182835508-182835747(+)$1	239	70	101	13.1600
!!ffffff!!bbnnnnnbb22ffffff22bb	chr12:112704891-112705192(+)$1	301	97	128	12.8913
c!!dddd[ddddnnnnndddd333dddd333	chr6:168281080-168281296(+)$1	216	15	46	12.6918
gggg"""eeeeennnnneeeee]gggggggf	chr18:47911479-47911797(+)$1	318	207	238	13.0672
$$$$$gggggggnnnnnggggggg4444bb4	chr7:101838683-101838985(+)$1	302	184	215	13.6634
ee####a[ddddnnnnndddd]a4444eeee	chr19:39955452-39955749(+)$1	297	74	105	13.1638
c"""==========lll==========4444	chr1:28564319-28564534(+)$1	215	174	205	12.9489
==========cccmmmmccc]==========	chr5:145529083-145529295(-)$1	212	151	182	11.8887
ccc"""bb[cccnnnnnccc]bb333ccc]g	chr18:33716183-33716445(+)$1	262	122	153	15.1236
=========cccnnnnnccc22=========	chr1:235384792-235385071(-)$1	279	76	107	16.5363
e####gggggggnnnnngggggggeeeee22	chr21:40642214-40642460(-)$1	246	204	235	13.8145
========[aaooooooa]a]==========	chr9:132593050-132593302(-)$1	252	73	104	13.2030
b[bb[ccc[cccnnnnnccc]ccc]bbbbEE	chr5:176958209-176958458(-)$1	249	11	42	11.3905
gggggg[ccc[annnnna]ccc]gggggggB	chr6:36562095-36562325(+)$1	230	58	89	13.3813
dd!!ccc!!cccnnnnnccc333ccc22ddd	chr9:139110718-139110989(-)$1	271	138	169	15.1670
[ddddgggggggnnnnnggggggg333dddd	chr6:4042619-4042878(+)$1	259	212	243	13.6065
"a!!ccc"""bboooooobb333ccc22a44	chr6:32948573-32948829(+)$1	256	78	109	12.2812
iiiiii"""cccnnnnnccc]iiiiiiiii:	chr6:34802975-34803339(+)$1	364	36	67	15.2368
dd"""gggggggoooooogggggggdddd]f	chr10:1063059-1063351(+)$1	292	167	198	10.9363
cc[ffffff[bbnnnnnbb333ffffff]cc	chr9:100774641-100774854(+)$1	213	107	138	13.7509
ddccc"""ddddnnnnnddddccc]dddd]c	chrX:153195497-153195758(-)$1	261	171	202	12.5284
####gggggggooooooggggggg4444ddd	chr16:72131476-72131775(+)$1	299	267	298	11.4816
fffff[ccc[bbnnnnnbb22cccffffff2	chr17:7481044-7481275(+)$1	231	160	191	13.0476
f[ccc[ffffffnnnnnffffff333cccff	chr20:52835486-52835767(+)$1	281	215	246	13.1447
iiiiiiii[cccooooooccciiiiiiiii:	chr2:174783356-174783615(-)$1	259	23	54	11.6785
[ffffff"""bbnnnnnbb22ffffff]ccc	chr10:81113411-81113716(+)$1	305	170	201	13.4837
!!==========nnnnn==========gggg	chr1:16257122-16257373(+)$1	251	171	202	16.4550
gggggccccccooooooccc]ccc4444ggg	chr8:48875405-48875623(+)$1	218	6	37	11.8086
d[bb"""cccbbnnnnnbb]ccc22bb22dd	chr16:70588859-70589125(+)$1	266	97	128	12.7870
a"""a[ffffffnnnnnffffff]a333aee	chr22:24953533-24953810(+)$1	277	173	204	13.7095
ee[ffffff[bbnnnnnbb]ffffff22eee	chr19:2114680-2114922(-)$1	242	202	233	12.5284
!============mmmm============22	chr16:11980249-11980543(-)$1	294	226	257	11.6191
=============mmmm==============	chr15:101812872-101813162(-)$1	290	191	222	11.9013
##eeeee!!cccnnnnnccc4444eeeee22	chr1:38040268-38040518(-)$1	250	107	138	13.7813
==========bboooooobb]==========	chr22:41650219-41650548(-)$1	329	294	325	13.2742
iiiiiii!!cccnnnnnccc55555iiiiii	chr9:131021346-131021552(-)$1	206	13	44	12.2323
fff!!gggggggnnnnngggggggffffff4	chr5:151173650-151173912(+)$1	262	125	156	13.6165
ee[==========oooooo==========66	chr19:7703835-7704087(+)$1	252	43	74	11.1248
ffff[bb!!cccnnnnnccc22bb]ffffff	chr17:62498237-62498442(-)$1	205	69	100	13.0405
c!!a"""bb[bbnnnnnbbbba22ccc]eee	chr11:71719917-71720167(-)$1	250	83	114	13.5036
e"""a[ffffffnnnnnffffffa22eeeee	chr12:53295669-53295954(-)$1	285	170	201	12.6029
cccaccc!!cccnnnnnccc333ccc22a]c	chrX:151130795-151131018(-)$1	223	15	46	15.4650
!dddd"""ddddnnnnndddd333ddddccc	chr7:120686846-120687100(+)$1	254	100	131	12.6175
hhhh!!a[acccnnnnnccc]a]ahhhhhhh	chr19:11362990-11363329(-)$1	339	155	186	12.9266
gggggg"""bboooooobb4444ggggggg2	chr12:22813898-22814221(+)$1	323	12	43	11.7237
[ccc[a[bb[bbnnnnnbbbb]a]ccc]bb]	chr6:52137144-52137349(-)$1	205	65	96	13.1696
ddccc[ccc[bbnnnnnbbccc]ccc]dddd	chrX:13346329-13346619(+)$1	290	70	101	13.6725
bb"""ccc!!bbnnnnnbb22cccbb]dddd	chr3:47742719-47742932(-)$1	213	39	70	13.4769
cc"""iiiiiiiiillliiiiiiiii22ccc	chr19:10905946-10906184(+)$1	238	46	77	11.3649
ggggggg####annnnna4444ggggggg44	chr4:56465239-56465448(-)$1	209	105	136	14.7902
[dddd[ccccccnnnnnccc]cccdddd]a]	chr15:49170342-49170598(+)$1	256	130	161	13.6529
ccc"""bbddddnnnnndddd]bb22ccc]b	chr17:1585060-1585291(-)$1	231	152	183	12.0553
gg[a[gggggggnnnnnggggggg]a]gggg	chr12:56188490-56188706(-)$1	216	24	55	14.8203

#otherMatches

#Seq PSSM
GAUGAACCCGUGUACAUUGCUGGUCAACAGG	chr2:38812687-38813035(-)$1	348	100	131	14.2844
UAAUAAGGGUGAAUUUAUCAACGUUCUUUGU	chrX:103434274-103434543(+)$1	269	182	213	15.4454
CUCUGCCCUGGCUGAGUGCCAGUGUCACAGC	chr19:13065154-13065401(-)$1	247	10	41	12.1761
GUUUCGACAAAGAAAAGCUCAGUCGGAUGGG	chr7:91603010-91603245(+)$1	235	22	53	13.1601
AUGUCCGGGGCUGCAUAAGAACUUGCAUUGU	chr5:151174935-151175206(+)$1	271	220	251	12.4948
GGAUGGAGUUUGGCCAACAGAUAAAACAUCU	chr11:3734974-3735300(-)$1	326	93	124	11.6323
CCCAGAAGAAUCAGUGCGGUUUCUGUGGCAG	chr1:182835508-182835747(+)$1	239	70	101	13.1600
augugcgucccucccgaagcugcgcgcucgg	chr12:112704891-112705192(+)$1	301	97	128	12.8913
AUCCUGCUGUCUACUACAGAUCCUGCAGACU	chr6:168281080-168281296(+)$1	216	15	46	12.6918
CAUUUAUAACUUGUGAUGAGUUCAAUGGUGU	chr18:47911479-47911797(+)$1	318	207	238	13.0672
AACAGCGACCUGAGCGGUAGGUUGGCCGGGC	chr7:101838683-101838985(+)$1	302	184	215	13.6634
CAUUGAGGGGGUGGGCAACCUGCGGCUUGGC	chr19:39955452-39955749(+)$1	297	74	105	13.1638
ACACCGUGUGCCAUAGAAUGGCACAUGUCAU	chr1:28564319-28564534(+)$1	215	174	205	12.9489
CUGUUAAUAGACUUGACAGUGUUAUUAGCAG	chr5:145529083-145529295(-)$1	212	151	182	11.8887
AUCAAGUGAUUCACUGGGAAAUAGAGGAUAA	chr18:33716183-33716445(+)$1	262	122	153	15.1236
UUUCACUUUGUCCAUUAGAUUGAAAGUGGAG	chr1:235384792-235385071(-)$1	279	76	107	16.5363
CUCAAAGUGUGGAAUUCUUACACUGGACAAC	chr21:40642214-40642460(-)$1	246	204	235	13.8145
GUUUCCUCAGCAAAGAAGACCGAGGAGAUGC	chr9:132593050-132593302(-)$1	252	73	104	13.2030
GAGGAGCUGCCCAUGAAGGGGGGCACCCUGG	chr5:176958209-176958458(-)$1	249	11	42	11.3905
CGCCGGGUGAGUGAGAGAGUUGGUUGGUGUU	chr6:36562095-36562325(+)$1	230	58	89	13.3813
CCCCCGGAGACAGUGCGUGUAGACCGAAGGC	chr9:139110718-139110989(-)$1	271	138	169	15.1670
AUUGUAGUAAAAGAUUUUUUUGCUUUAACAA	chr6:4042619-4042878(+)$1	259	212	243	13.6065
GGGACAUUUACUGAAGGAGGGACAUGGACAA	chr6:32948573-32948829(+)$1	256	78	109	12.2812
ACUUUGAAAGUUGGAAUGAUACGAGGUGAUA	chr6:34802975-34803339(+)$1	364	36	67	15.2368
AGUAUGGUUUCAUGAAAUUGGAGCUCUGUAU	chr10:1063059-1063351(+)$1	292	167	198	10.9363
AUGAAGGUGGGCCUAAUGCAUGCAUUUUGAU	chr9:100774641-100774854(+)$1	213	107	138	13.7509
UCCGAGCUCAGGAGAGGCCUGUCGCGAGGAG	chrX:153195497-153195758(-)$1	261	171	202	12.5284
UCGUCUUCAGUGAGAUUGCUGAGGCAUUGAG	chr16:72131476-72131775(+)$1	299	267	298	11.4816
AGCAGAGUUUUGAUUACCACUGACCUGCUGG	chr17:7481044-7481275(+)$1	231	160	191	13.0476
ACUUUUUUUAUUUGUUUAAUAAACUUGAAUA	chr20:52835486-52835767(+)$1	281	215	246	13.1447
AGAAGACAUGUAAUUUCAUGCUGUCUUUUUG	chr2:174783356-174783615(-)$1	259	23	54	11.6785
GUGGCCAGUUGAGCUAAUCUGUGGCCAGGGU	chr10:81113411-81113716(+)$1	305	170	201	13.4837
AAGAGAGGCAGGAAUUGUUUGCUUCUCGUUU	chr1:16257122-16257373(+)$1	251	171	202	16.4550
UUGGGGAGGUAAUCAAAUACUCUUUAAAUUC	chr8:48875405-48875623(+)$1	218	6	37	11.8086
UAUCCAGAUGGCAUUCGGCACAUACGAGCAG	chr16:70588859-70589125(+)$1	266	97	128	12.7870
CGAACACCGGUGAGGUAUAUCGGGGGAAGCU	chr22:24953533-24953810(+)$1	277	173	204	13.7095
GGUGGAGGCCACAUGUGGUUGCUUCCCUUCC	chr19:2114680-2114922(-)$1	242	202	233	12.5284
GUUUUUUCCUUUUUUUAAAAAGGAAAAGGAU	chr16:11980249-11980543(-)$1	294	226	257	11.6191
CUUGUUAGUGUCACUUUUGACAUUAGCAAGA	chr15:101812872-101813162(-)$1	290	191	222	11.9013
AAAUUAAGAGUCCUGAAGACCACAUUGGUGC	chr1:38040268-38040518(-)$1	250	107	138	13.7813
AGGCACUUUCACAAUGGGGUAGGGGGUGUCU	chr22:41650219-41650548(-)$1	329	294	325	13.2742
GCUGCAGACCCAGCUCGUGGACCAGCUGCAG	chr9:131021346-131021552(-)$1	206	13	44	12.2323
GGUCUUUGGUGGGUUUGUCACUGAGCCUCAG	chr5:151173650-151173912(+)$1	262	125	156	13.6165
AUCCAUCUGUCCAUCCAUCUGGACAGGUGCU	chr19:7703835-7704087(+)$1	252	43	74	11.1248
AGUUUAAUAACACAACUUGUCUUUUAACUUA	chr17:62498237-62498442(-)$1	205	69	100	13.0405
GGGCUGAAGACCAAGGAGGCUGAACAGACCU	chr11:71719917-71720167(-)$1	250	83	114	13.5036
CGAAGCAACAUGGACAACAUGUUCGAGAGCU	chr12:53295669-53295954(-)$1	285	170	201	12.6029
UCCCGGACACCUUUUUUAGGAAUUCUAAGAG	chrX:151130795-151131018(-)$1	223	15	46	15.4650
UGGGCUCUUGGGAUCUGCUCAUUUGCCUGUC	chr7:120686846-120687100(+)$1	254	100	131	12.6175
GUCAUUGUCCACAGAAGGUGAGUCUGACUUA	chr19:11362990-11363329(-)$1	339	155	186	12.9266
GGGAUUUAUUCAAAAUAGAUUUUAAUCCUUA	chr12:22813898-22814221(+)$1	323	12	43	11.7237
GGCAGGGAGAUGGAAUUCACUGUGUGUGGCU	chr6:52137144-52137349(-)$1	205	65	96	13.1696
CCGUGACAUCACAAUGAGUAUGAUACAGGUC	chrX:13346329-13346619(+)$1	290	70	101	13.6725
GCCAAGCUAGCCUUUAUGGGAAGCGCAGAAG	chr3:47742719-47742932(-)$1	213	39	70	13.4769
GCCACGGGGGCGCCCCGGGUGCCUCCAUGCA	chr19:10905946-10906184(+)$1	238	46	77	11.3649
GAAUGGAAGAAGGUCAGCAGGGUUCAUUUAA	chr4:56465239-56465448(-)$1	209	105	136	14.7902
GGCAGCGGGAGCCGGGAGCUAUCCCUGCGUC	chr15:49170342-49170598(+)$1	256	130	161	13.6529
CACCAGCCGUUGAGGGACAGCAGGAAGUGAG	chr17:1585060-1585291(-)$1	231	152	183	12.0553
UUGUCUAUUUUUACUUAGAGAAUGCAGAAGA	chr12:56188490-56188706(-)$1	216	24	55	14.8203

#DB
..(((.((.(((.....))).)))))...))	chr2:38812687-38813035(-)$1	1	100	131	14.2844
(.((((((((((.....)))....)))))))	chrX:103434274-103434543(+)$1	1	182	213	15.4454
((.(((.(((((.....))))).).)).)))	chr19:13065154-13065401(-)$1	1	10	41	12.1761
..((((((..((.....))..))))))))))	chr7:91603010-91603245(+)$1	1	22	53	13.1601
((((..((..((.....))..)).)))))).	chr5:151174935-151175206(+)$1	1	220	251	12.4948
(((((..(((((.....)))))....)))).	chr11:3734974-3735300(-)$1	1	93	124	11.6323
(((((((..(((.....)))))))).))).)	chr1:182835508-182835747(+)$1	1	70	101	13.1600
..((((((..((.....))..))))))..))	chr12:112704891-112705192(+)$1	1	97	128	12.8913
(..((((.((((.....))))...))))...	chr6:168281080-168281296(+)$1	1	15	46	12.6918
((((...(((((.....))))).))))))))	chr18:47911479-47911797(+)$1	1	207	238	13.0672
.....(((((((.....)))))))....)).	chr7:101838683-101838985(+)$1	1	184	215	13.6634
((....(.((((.....)))).)....))))	chr19:39955452-39955749(+)$1	1	74	105	13.1638
(...((((((((((...))))))))))....	chr1:28564319-28564534(+)$1	1	174	205	12.9489
(((((((((((((....))).))))))))))	chr5:145529083-145529295(-)$1	1	151	182	11.8887
(((...((.(((.....))).))...))).)	chr18:33716183-33716445(+)$1	1	122	153	15.1236
((((((((((((.....)))..)))))))))	chr1:235384792-235385071(-)$1	1	76	107	16.5363
(....(((((((.....))))))))))))..	chr21:40642214-40642460(-)$1	1	204	235	13.8145
((((((((.((......).).))))))))))	chr9:132593050-132593302(-)$1	1	73	104	13.2030
(.((.(((.(((.....))).))).))))((	chr5:176958209-176958458(-)$1	1	11	42	11.3905
((((((.(((.(.....).))).))))))))	chr6:36562095-36562325(+)$1	1	58	89	13.3813
((..(((..(((.....)))...)))..)))	chr9:139110718-139110989(-)$1	1	138	169	15.1670
.(((((((((((.....)))))))...))))	chr6:4042619-4042878(+)$1	1	212	243	13.6065
.(..(((...((......))...)))..)..	chr6:32948573-32948829(+)$1	1	78	109	12.2812
((((((...(((.....))).))))))))).	chr6:34802975-34803339(+)$1	1	36	67	15.2368
((...(((((((......))))))))))).)	chr10:1063059-1063351(+)$1	1	167	198	10.9363
((.((((((.((.....))...)))))).))	chr9:100774641-100774854(+)$1	1	107	138	13.7509
(((((...((((.....))))))).)))).)	chrX:153195497-153195758(-)$1	1	171	202	12.5284
....(((((((......)))))))....)))	chr16:72131476-72131775(+)$1	1	267	298	11.4816
(((((.(((.((.....))..))))))))).	chr17:7481044-7481275(+)$1	1	160	191	13.0476
(.(((.((((((.....))))))...)))))	chr20:52835486-52835767(+)$1	1	215	246	13.1447
((((((((.(((......)))))))))))).	chr2:174783356-174783615(-)$1	1	23	54	11.6785
.((((((...((.....))..)))))).)))	chr10:81113411-81113716(+)$1	1	170	201	13.4837
..((((((((((.....))))))))))))))	chr1:16257122-16257373(+)$1	1	171	202	16.4550
(((((((((((......))).)))....)))	chr8:48875405-48875623(+)$1	1	6	37	11.8086
(.((...(((((.....)).)))..))..))	chr16:70588859-70589125(+)$1	1	97	128	12.7870
(...(.((((((.....)))))).)...)))	chr22:24953533-24953810(+)$1	1	173	204	13.7095
((.((((((.((.....)).))))))..)))	chr19:2114680-2114922(-)$1	1	202	233	12.5284
.((((((((((((....))))))))))))..	chr16:11980249-11980543(-)$1	1	226	257	11.6191
(((((((((((((....))))))))))))))	chr15:101812872-101813162(-)$1	1	191	222	11.9013
..(((((..(((.....)))....)))))..	chr1:38040268-38040518(-)$1	1	107	138	13.7813
((((((((((((......)).))))))))))	chr22:41650219-41650548(-)$1	1	294	325	13.2742
(((((((..(((.....))).....))))))	chr9:131021346-131021552(-)$1	1	13	44	12.2323
(((..(((((((.....))))))))))))).	chr5:151173650-151173912(+)$1	1	125	156	13.6165
((.((((((((((......))))))))))..	chr19:7703835-7704087(+)$1	1	43	74	11.1248
((((.((..(((.....)))..)).))))))	chr17:62498237-62498442(-)$1	1	69	100	13.0405
(..(...((.((.....)))))..))).)))	chr11:71719917-71720167(-)$1	1	83	114	13.5036
(...(.((((((.....)))))))..)))))	chr12:53295669-53295954(-)$1	1	170	201	12.6029
(((((((..(((.....)))...)))..).)	chrX:151130795-151131018(-)$1	1	15	46	15.4650
.((((...((((.....))))...)))))))	chr7:120686846-120687100(+)$1	1	100	131	12.6175
((((..(.((((.....))).).))))))))	chr19:11362990-11363329(-)$1	1	155	186	12.9266
((((((...((......))....))))))).	chr12:22813898-22814221(+)$1	1	12	43	11.7237
.(((.(.((.((.....)))).).))).)).	chr6:52137144-52137349(-)$1	1	65	96	13.1696
(((((.(((.((.....))))).))).))))	chrX:13346329-13346619(+)$1	1	70	101	13.6725
((...(((..((.....))..))))).))))	chr3:47742719-47742932(-)$1	1	39	70	13.4769
((...(((((((((...)))))))))..)))	chr19:10905946-10906184(+)$1	1	46	77	11.3649
(((((((....(.....)....)))))))..	chr4:56465239-56465448(-)$1	1	105	136	14.7902
.((((.((((((.....))).))))))).).	chr15:49170342-49170598(+)$1	1	130	161	13.6529
(((...((((((.....)))).))..))).)	chr17:1585060-1585291(-)$1	1	152	183	12.0553
((.(.(((((((.....))))))).).))))	chr12:56188490-56188706(-)$1	1	24	55	14.8203

#PSSM
c : 0.15	= : 0.10	d : 0.10	g : 0.10	! : 0.08	e : 0.08	i : 0.06	[ : 0.06	f : 0.06	b : 0.05	$ : 0.03	# : 0.03	" : 0.01	a : 0.01	h : 0.01	
d : 0.15	c : 0.11	g : 0.10	= : 0.10	! : 0.08	[ : 0.06	i : 0.06	f : 0.06	e : 0.05	" : 0.05	# : 0.05	$ : 0.03	a : 0.01	h : 0.01	b : 0.01	
c : 0.13	= : 0.11	g : 0.10	f : 0.10	" : 0.10	[ : 0.08	d : 0.08	! : 0.06	# : 0.05	i : 0.05	e : 0.03	b : 0.03	$ : 0.01	h : 0.01	
" : 0.13	= : 0.13	f : 0.11	g : 0.10	d : 0.10	c : 0.08	b : 0.05	# : 0.05	! : 0.05	i : 0.05	a : 0.05	e : 0.03	$ : 0.01	h : 0.01	
= : 0.15	" : 0.13	c : 0.11	g : 0.10	f : 0.10	d : 0.08	[ : 0.06	! : 0.05	i : 0.05	e : 0.03	# : 0.03	a : 0.03	b : 0.01	$ : 0.01	
g : 0.18	= : 0.15	[ : 0.11	" : 0.11	c : 0.10	f : 0.08	i : 0.06	! : 0.05	a : 0.03	e : 0.03	d : 0.01	# : 0.01	b : 0.01	
g : 0.15	= : 0.15	c : 0.15	f : 0.13	" : 0.11	b : 0.08	[ : 0.05	i : 0.05	e : 0.03	a : 0.03	! : 0.01	d : 0.01	
= : 0.15	g : 0.13	c : 0.13	f : 0.11	b : 0.10	! : 0.10	" : 0.10	e : 0.05	[ : 0.05	i : 0.03	# : 0.01	
! : 0.16	g : 0.13	= : 0.13	c : 0.10	[ : 0.08	d : 0.08	f : 0.08	" : 0.06	e : 0.05	b : 0.03	a : 0.01	i : 0.01	# : 0.01	
c : 0.30	g : 0.11	= : 0.11	[ : 0.10	d : 0.08	! : 0.06	e : 0.05	f : 0.05	" : 0.03	a : 0.01	b : 0.01	i : 0.01	# : 0.01	
c : 0.28	b : 0.25	g : 0.11	d : 0.08	= : 0.08	e : 0.05	f : 0.05	a : 0.01	[ : 0.01	i : 0.01	# : 0.01	
c : 0.27	b : 0.23	g : 0.10	d : 0.08	= : 0.08	o : 0.06	e : 0.05	f : 0.05	a : 0.03	i : 0.01	
n : 0.76	o : 0.13	= : 0.06	c : 0.01	i : 0.01	
n : 0.76	o : 0.15	m : 0.05	= : 0.01	i : 0.01	
n : 0.76	o : 0.15	m : 0.05	l : 0.03	
n : 0.76	o : 0.15	m : 0.05	l : 0.03	
n : 0.76	o : 0.15	m : 0.05	l : 0.03	
c : 0.27	b : 0.22	g : 0.10	d : 0.08	o : 0.08	= : 0.06	e : 0.05	a : 0.05	f : 0.05	i : 0.01	
c : 0.28	b : 0.25	g : 0.11	d : 0.08	= : 0.06	e : 0.05	f : 0.05	] : 0.03	o : 0.01	i : 0.01	4 : 0.01	
c : 0.32	g : 0.11	2 : 0.10	d : 0.08	= : 0.08	b : 0.06	e : 0.05	f : 0.05	] : 0.03	4 : 0.03	a : 0.01	3 : 0.01	i : 0.01	
] : 0.16	2 : 0.13	g : 0.11	d : 0.08	= : 0.08	4 : 0.06	e : 0.06	c : 0.06	3 : 0.06	f : 0.06	b : 0.03	5 : 0.01	i : 0.01	
c : 0.15	= : 0.13	f : 0.11	g : 0.11	3 : 0.10	4 : 0.06	e : 0.06	b : 0.05	] : 0.05	i : 0.05	2 : 0.03	a : 0.03	5 : 0.01	
= : 0.15	f : 0.13	g : 0.13	c : 0.11	b : 0.08	] : 0.08	3 : 0.08	4 : 0.06	i : 0.05	a : 0.03	e : 0.01	5 : 0.01	2 : 0.01	
c : 0.18	g : 0.18	= : 0.15	f : 0.08	4 : 0.06	3 : 0.06	a : 0.05	] : 0.05	i : 0.05	2 : 0.03	b : 0.03	e : 0.01	5 : 0.01	
= : 0.15	c : 0.11	f : 0.11	g : 0.10	] : 0.08	4 : 0.08	d : 0.06	e : 0.05	3 : 0.05	i : 0.05	2 : 0.05	a : 0.01	5 : 0.01	h : 0.01	b : 0.01	
= : 0.15	f : 0.13	c : 0.11	d : 0.10	g : 0.08	4 : 0.08	b : 0.06	3 : 0.06	i : 0.06	e : 0.03	2 : 0.03	] : 0.01	h : 0.01	a : 0.01	
= : 0.15	f : 0.11	d : 0.11	c : 0.10	g : 0.08	2 : 0.08	4 : 0.06	3 : 0.05	b : 0.05	e : 0.05	i : 0.05	] : 0.05	h : 0.01	
d : 0.16	g : 0.11	2 : 0.11	= : 0.11	f : 0.08	] : 0.06	c : 0.06	4 : 0.06	e : 0.06	i : 0.05	3 : 0.03	b : 0.01	h : 0.01	
g : 0.13	d : 0.13	c : 0.11	= : 0.11	e : 0.10	i : 0.06	f : 0.06	b : 0.06	a : 0.05	3 : 0.03	2 : 0.03	] : 0.03	4 : 0.01	h : 0.01	
g : 0.11	d : 0.11	] : 0.10	c : 0.08	f : 0.08	e : 0.08	= : 0.08	i : 0.06	b : 0.06	4 : 0.05	2 : 0.05	3 : 0.01	E : 0.01	6 : 0.01	h : 0.01	a : 0.01	
c : 0.13	d : 0.10	g : 0.08	f : 0.08	4 : 0.08	e : 0.08	= : 0.08	2 : 0.08	] : 0.05	i : 0.03	3 : 0.03	b : 0.03	: : 0.03	E : 0.01	B : 0.01	6 : 0.01	h : 0.01	

#score	776.1844464067759
#seq	59
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_UTR_m1_run2.txt

#BEAR
ccccccbbccc[ccc[ddddooooooddddccc22ccc]	chr17:39847029-39847269(+)$1	240	81	120	11.5375
eeeee[ccc####cccaooooooa]ccc22ccc]eeeee	chrX:47442760-47443023(+)$1	263	43	82	12.0818
fffffeeeee[ffffffcccmmmmccc]ffffffeeeee	chr7:5567372-5567616(-)$1	244	25	64	11.4224
iiiiiiii"""bb"""ddddlllddddbb333iiiiiii	chr11:62482632-62482893(-)$1	261	80	119	12.6647
[a[ccc!!eeeee"""cccnnnnnccc4444eeeeeccc	chr5:10258458-10258712(+)$1	254	171	210	13.5334
###eeeee!!ccc####bboooooobb333ccc]eeeee	chr6:31750005-31750258(-)$1	253	10	49	14.7836
d!!dddd[dddd[ccc!!bbmmmmbb22ccc333ddddd	chr17:37009173-37009388(-)$1	215	91	130	12.6068
"""bb[ggggggg####ccclllccc4444ggggggg]b	chr12:49666701-49666944(+)$1	243	71	110	14.2647
hhhhhhh"""ccc"""ddddmmmmdddd]ccchhhhhhh	chr6:49573421-49573642(-)$1	221	26	65	11.9690
ggggggg"""eeeee!!cccnnnnnccc22eeeee]ggg	chr11:111959577-111959836(+)$1	259	164	203	12.2732
ee[eeeee####ccc[bb[ammmma]bb]ccc333eeee	chr11:63742049-63742325(+)$1	276	174	213	12.8879
i[ccc[eeeee$$$$$ddddmmmmdddd4444eeeee]c	chr20:33867691-33867930(-)$1	239	117	156	13.0810
ii[ccc"""ggggggg[bbmmmmbb]ggggggg]cccii	chr6:27806310-27806559(+)$1	249	52	91	13.0739
d[ccc!!bb[ccc[a[cccnnnnnccc]a]ccc]bbccc	chr6:26200072-26200311(+)$1	239	15	54	12.7880
b[ccc!!eeeee"""bb[bbmmmmbb]bb4444eeeee2	chr10:102120595-102120843(+)$1	248	174	213	12.3782
c[a####dddd[a[addddmmmmdddd]a]a]dddd333	chr16:87436551-87436796(+)$1	245	75	114	12.1849
eeee!!ffffff####ddddmmmmdddd4444ffffff2	chr6:33384363-33384640(-)$1	277	122	161	12.4377
dddd[bb"""ccc"""ddddmmmmdddd22ccc]bb]dd	chr3:179322495-179322783(+)$1	288	129	168	13.2893
dd"""cccdddd[ccc[cccmmmmccc]ccc]dddd]cc	chr10:74033597-74033862(+)$1	265	54	93	13.9069
fffeeeee!!aeeeee[cccmmmmccc22eeeee]a22e	chr19:13034871-13035136(-)$1	265	166	205	12.7624
ff!!dddd[eeeee[a[cccmmmmccc333a]eeeeedd	chr19:49119070-49119304(-)$1	234	44	83	14.7623
ddddffffff==========mmmm==========>>>>>	chr12:51636093-51636374(+)$1	281	112	151	11.6469
"""dddd!!bb[bb!!a[ccclllccc]a22bb]bb22d	chr4:6642458-6642730(+)$1	272	116	155	11.4590
cc"""ccc[bb[dddd[cccmmmmcccdddd]bb22ccc	chr19:39329460-39329749(-)$1	289	174	213	12.2977
!!dddd!!ccc[dddd[cccoooooocccdddd333ccc	chr6:30690602-30690831(+)$1	229	132	171	12.5396
bb[ccc"""ggggggg[bbmmmmbb]ggggggg333ccc	chr17:33953688-33953937(+)$1	249	25	64	12.8992
ddd####bb[ccc[acccooooooccc]a]ccc]bb444	chr11:760024-760280(+)$1	256	17	56	12.7848
c[bba[ccc"""dddd[cccmmmmcccdddd]ccc]a]b	chr8:100904144-100904380(-)$1	236	74	113	12.5130
cc[bb[eeeee[gggggggooooooggggggg]eeeee2	chr1:109968900-109969157(-)$1	257	130	169	11.4586
c!!ccc"""cccdddd[cccmmmmccc]dddd333ccc2	chrX:47444516-47444763(+)$1	247	148	187	14.5400
cc[ggggggg[bbccc[bbmmmmbbccc333bb]ggggg	chr1:25664772-25665045(+)$1	273	7	46	13.1483
ccccc"""ffffff####bbmmmmbb22ffffff333cc	chr11:61077687-61077933(-)$1	246	44	83	12.6589
cccddddiiiiiiiii[ccclllccc]iiiiiiiii333	chr19:40327159-40327396(-)$1	237	163	202	13.1568
bb[ccc!!dddd!!a[bbbbmmmmbb]bb]a22dddd]c	chr10:120938163-120938413(-)$1	250	185	224	11.9544
"""eeeee[ccc####ddddmmmmdddd333ccceeeee	chr19:19638764-19639011(+)$1	247	109	148	14.5522
c!!hhhhhhhhccc####bbmmmmbb4444ccc]hhhhh	chr5:177631584-177631838(+)$1	254	163	202	13.4346
fff!!bbdddd!!ccc[cccmmmmccc]ccc4444dddd	chr17:73774637-73774881(-)$1	244	164	203	13.4621
b]ffffffggggggg!!cccmmmmccc333gggggggFF	chr17:66033477-66033711(+)$1	234	188	227	13.3106
ddd[ggggggg####eeeeemmmmeeeeeggggggg]dd	chr15:72492714-72492940(-)$1	226	153	192	11.8458
bb[bb[ffffff[ddddcccooooooccc]dddd333ff	chr7:99691751-99691974(-)$1	223	100	139	11.0113
ffffff####ccc[ccc[bblllbb]ccc]ccc22ffff	chr15:40330409-40330661(-)$1	252	154	193	11.4158
bb[ccc[eeeee####ddddmmmmdddd22eeeeeccc]	chr16:88876436-88876656(-)$1	220	153	192	13.6108
iiiiiiiiaeeeee"""cccrrrrrrrrrccc333eeee	chr15:78832703-78832968(+)$1	265	135	174	11.1076
ee[hhhhhhhh!!cccddddmmmmdddd22ccc333hhh	chr17:41154620-41154860(+)$1	240	75	114	12.8360
dd[eeeeeccc[a!!a[cccmmmmcccaa]ccc]eeeee	chr6:31749555-31749826(-)$1	271	82	121	15.5529
eeee[ccc[ccc[a[a[bbmmmmbb]a]a]ccc]cccee	chr19:49611182-49611406(+)$1	224	122	161	13.5027
f[a[eeeee[ffffff[cccmmmmccc4444ffffff]e	chr22:22893144-22893399(-)$1	255	197	236	13.3970
bb[dddd[ccceeeee!!ccclllccc]eeeee333ccc	chr11:85779759-85780018(-)$1	259	187	226	11.9769
==========!!bb!!ddddmmmmdddd22bb]======	chr15:72501912-72502153(-)$1	241	78	117	13.7848
dd!!dddd[ccc[ffffffammmma]ffffff]ccc22d	chr5:151174939-151175249(+)$1	310	16	55	11.2050
fff####dddd[ccc!!bbmmmmbb]ccc]dddd333ff	chr5:81574037-81574273(-)$1	236	122	161	12.0125
====####dddd"""a[bboooooobb]a22dddd4444	chr1:45205536-45205770(+)$1	234	14	53	13.2347
ggggggg[dddd[bb!!bboooooobb22bb]ddddggg	chrX:77160604-77160877(+)$1	273	59	98	11.5010
ee::============[cccmmmmccc============	chr2:63821529-63821771(+)$1	242	32	71	13.4608
ggggggg[a[a!!ddddcccmmmmccc22dddd22a]ag	chr7:5567811-5568021(-)$1	210	28	67	13.7885
eeeeeiiiiiiiii"""bboooooobb333iiiiiiiii	chr19:40971510-40971746(-)$1	236	27	66	14.3991
dd####ccc[eeeee!!cccmmmmccceeeeecccdddd	chr1:161326364-161326609(+)$1	245	36	75	13.0486
h!!ggggggg!!ffffffbbmmmmbb]ffffffgggggg	chr19:59056223-59056464(+)$1	241	25	64	11.7947
dddddddd[ccc"""cccnnnnnccc4444ccc]dddd]	chr6:109703477-109703714(-)$1	237	176	215	11.3561
=======eeeee!!bb[ccclllcccbb22eeeeedddd	chr19:19011089-19011332(-)$1	243	59	98	12.4354
b!!ccchhhhhhhh"""bboooooobb333hhhhhhhh3	chr19:40883893-40884174(+)$1	281	170	209	12.1189
cc[ccc[ccc"""eeeeeooooooeeeee]ccc]ccc]c	chr10:70847771-70848004(+)$1	233	81	120	12.3138

#otherMatches

#Seq PSSM
UUUCCUUGCAAUGAGUAGAAUUUCCCUUCUCUCCCUUGU	chr17:39847029-39847269(+)$1	240	81	120	11.5375
CAGAACCCACCAUGGCCCCCUUUGAGCCCCUGGCUUCUG	chrX:47442760-47443023(+)$1	263	43	82	12.0818
UGGGGUCCUGUGGUGUGUGGGGAGCUGUCACAUCCAGGG	chr7:5567372-5567616(-)$1	244	25	64	11.4224
CCGAUACUACAGGAAUUACUACGGGUACCAAGGGUAUCG	chr11:62482632-62482893(-)$1	261	80	119	12.6647
GAAGAGAUGAUUCAACAAGUAAGUCUUACCAGAGUCCUC	chr5:10258458-10258712(+)$1	254	171	210	13.5334
UGGCCUUCUCACCUACGUGUACCCCCAGCCGGUCGAAGG	chr6:31750005-31750258(-)$1	253	10	49	14.7836
AAUCAAUUGUGCUGACAACACAGGUGAGGUCUUUGCACG	chr17:37009173-37009388(-)$1	215	91	130	12.6068
ACAGAGAGCUGUGUGCAUGCUGAGCAAUACCACAGCUGU	chr12:49666701-49666944(+)$1	243	71	110	14.2647
UUGUUUCAAUACUAAUUUCUGACAAGAACAGUGAAAUAA	chr6:49573421-49573642(-)$1	221	26	65	11.9690
AUAGCAAUUCCAAAUAUAGUUGUCUGCUCAGUUUGUUUG	chr11:111959577-111959836(+)$1	259	164	203	12.2732
CAAGAUCCAUUCGUUGCCGCCGGAGGGGAAGCUUGGGAU	chr11:63742049-63742325(+)$1	276	174	213	12.8879
CUGGUGCAUCCCAAGACUUCAAUUGAAGACCAGGAUGAG	chr20:33867691-33867930(-)$1	239	117	156	13.0810
AGUGAAUAAGCGGUAGGUUGACAGAGCUACCGUCUUCCU	chr6:27806310-27806559(+)$1	249	52	91	13.0739
UGCUGCUGCCCGGGGAGCUGGCUAAGCACGCCGUGUCAG	chr6:26200072-26200311(+)$1	239	15	54	12.7880
GCUACCAGGAUGCUAAAGAUGAUGAUGUUAACCCAUUCC	chr10:102120595-102120843(+)$1	248	174	213	12.3782
GUGAGAAAGAUGAAGAUGGAUUCCUGUACAUGGUCUAUG	chr16:87436551-87436796(+)$1	245	75	114	12.1849
CAUUGCCUGUGGAACAGGGGAACUUUCCGUACCUGCAGU	chr6:33384363-33384640(-)$1	277	122	161	12.4377
CGGCGGGUUUCGGUUACUGCGGUGGCAGCUCUGUCUGGC	chr3:179322495-179322783(+)$1	288	129	168	13.2893
UUAUAGGCUGCUCCGCGCUGGUGCUAGGGCGCAGCAGGC	chr10:74033597-74033862(+)$1	265	54	93	13.9069
GGAGCGGUAAGUGCCCAAGUGGAAACUCGGGGUGUCCAG	chr19:13034871-13035136(-)$1	265	166	205	12.7624
GGCCAGAAGCUGGGCGCCAGAUCCCUGUCUCACCCGGUU	chr19:49119070-49119304(-)$1	234	44	83	14.7623
CAUGGGUGGUUCAGAUGGUGGCUACACCAUCUGGUGAGG	chr12:51636093-51636374(+)$1	281	112	151	11.6469
AGGCAGUGGGAAGAGAUGCGGCCCCUGGACAUCGUCGAG	chr4:6642458-6642730(+)$1	272	116	155	11.4590
CCUCAACAACAACUUCAUGUUUGGGCAGAAGCUGAAUGU	chr19:39329460-39329749(-)$1	289	174	213	12.2977
ACCUGGGACCAUGGACUCUGUUCGCUCAGGUCCUUUUGG	chr6:30690602-30690831(+)$1	229	132	171	12.5396
UGAAGUUUCUAGAAUUGUUACCUAAGGAUUCUGACUACU	chr17:33953688-33953937(+)$1	249	25	64	12.8992
CAGACACCCGGCCUCCAGCUUGCUCUGCGUGGUGGGCAA	chr11:760024-760280(+)$1	256	17	56	12.7848
uaaucauauuuucugaaucucuuaagguuagcaUACGUA	chr8:100904144-100904380(-)$1	236	74	113	12.5130
GGUGAGUUGGGUGCCGGUGGAGUCGUGUUGGUCCUCAGA	chr1:109968900-109969157(-)$1	257	130	169	11.4586
CCAUGGAGAGUGUCUGCGGAUACUUCCACAGGUCCCACA	chrX:47444516-47444763(+)$1	247	148	187	14.5400
CCCUCCGCCCCGUGUCCGCAUGCGCGACUGAGCCGGGUG	chr1:25664772-25665045(+)$1	273	7	46	13.1483
CUCUGUCCAGCAGUGUAAGCUCCAGCAAGCUGUUCUCCA	chr11:61077687-61077933(-)$1	246	44	83	12.6589
UCCUGCGUAAUGGAGGACACUUUGUGAUUUCCAUUAAGG	chr19:40327159-40327396(-)$1	237	163	202	13.1568
GGUGGCUCCGGGAACGUGCUUCUCAGACAGGACCCCGCG	chr10:120938163-120938413(-)$1	250	185	224	11.9544
ACGGGCUGCGCACCACAGAGGAGGCUCUCCAUGCCAGCC	chr19:19638764-19639011(+)$1	247	109	148	14.5522
GGCGGCCGGCGGGCGGGAGCUCUGGCGGGAGCCGCGCCG	chr5:177631584-177631838(+)$1	254	163	202	13.4346
GACAUCCAGUUGGCUCGCCGGAUACGGGGAGAGAGAGCU	chr17:73774637-73774881(-)$1	244	164	203	13.4621
ACUUUUCUUAGAAAUUCAAGUAAACUUAACAUUUCUAGU	chr17:66033477-66033711(+)$1	234	188	227	13.3106
CUAGAGGAGCUUGGGGAUGCUUGAGCAUUGGCUUCUGUG	chr15:72492714-72492940(-)$1	226	153	192	11.8458
AGAGGCUUGGGCUAGUAAGGAUGCCACCUAUACUUCUGC	chr7:99691751-99691974(-)$1	223	100	139	11.0113
UGGGAAGAAGAAGAUCAGCACUGUGGUGAGCUUAAUUUC	chr15:40330409-40330661(-)$1	252	154	193	11.4158
CGUGGAUGAUCUGCUGGCCACUGGUGGUAAGGGUCUCCC	chr16:88876436-88876656(-)$1	220	153	192	13.6108
AAGGGCUCCGUGGACAUCUCAGGUCUUCAGGGUCUUCCA	chr15:78832703-78832968(+)$1	265	135	174	11.1076
UGUGGAUAUCCCCUUGGACAAAACUGUCGUCAAUAAGGA	chr17:41154620-41154860(+)$1	240	75	114	12.8360
CUGCACCUGUGGCAGGACCCUGAUGGGCGGUACUGGGUG	chr6:31749555-31749826(-)$1	271	82	121	15.5529
GAGGAGCUGCGUGGCGGCGGUGGCGACAUGGCGGAGCCC	chr19:49611182-49611406(+)$1	224	122	161	13.5027
GAGGUUCGCCCCAGGUAAGGGUGACCUAGCAGCUUGGUG	chr22:22893144-22893399(-)$1	255	197	236	13.3970
GCUGCAGAGAUGUCCGGCCAGAGCCUGACGGACCGAAUC	chr11:85779759-85780018(-)$1	259	187	226	11.9769
GGAAGUGGGCAGCAAGAUCUACGUGGAUGAUGGGCUUAU	chr15:72501912-72502153(-)$1	241	78	117	13.7848
UGUUGUUUUGUGAACAUUGCGAAAGUUAAUGUAUAUGUG	chr5:151174939-151175249(+)$1	310	16	55	11.2050
GCCGACAGGAUGGGUGAGCUGUUGUGGCCGGUUUAAGGG	chr5:81574037-81574273(-)$1	236	122	161	12.0125
GCGAAAUUGAGGUUUCUUGGUAUUGCGCGUUUCUCUUCC	chr1:45205536-45205770(+)$1	234	14	53	13.2347
CAUUUUAAUUCUUACAGGUAGCAACACAAGUCGGAAUAG	chrX:77160604-77160877(+)$1	273	59	98	11.5010
CCUGGAUAUUUUUAAGGUACAGUAGUACUUAAAGAUGUU	chr2:63821529-63821771(+)$1	242	32	71	13.4608
GAGCUGCCUGACGGCCAGGUCAUCACCAUUGGCAAUGAG	chr7:5567811-5568021(-)$1	210	28	67	13.7885
GCCCUUCGAGCCAGCUCCGCCCCGUUGUUCCUGGCUUGA	chr19:40971510-40971746(-)$1	236	27	66	14.3991
GUUUUAUGUAUCAUAUUAGUUGUAACUUAUGAGCAGCUG	chr1:161326364-161326609(+)$1	245	36	75	13.0486
CCUCUGCCUCAGCCGCGGCGUCGUcgcccgcggggggcg	chr19:59056223-59056464(+)$1	241	25	64	11.7947
UGGGCGUGCUCUGCGUGCUGUCCGCGGACAAGAACACGA	chr6:109703477-109703714(-)$1	237	176	215	11.3561
UGCCUGUGUCUCCAGGAUAGUGGCUACCCAGAGACGCUG	chr19:19011089-19011332(-)$1	243	59	98	12.4354
CCUGCCGCCUGCUCUGAGGCCCGAUCCAGUGGGCAGGCC	chr19:40883893-40884174(+)$1	281	170	209	12.1189
CCUGCUACAUUUCCUAAUCAAGAAGUUGGCGUGCAGCUG	chr10:70847771-70848004(+)$1	233	81	120	12.3138

#DB
(((((((((((.(((.((((......)))))))..))).	chr17:39847029-39847269(+)$1	1	81	120	11.5375
(((((.(((....((((......).)))..))).)))))	chrX:47442760-47443023(+)$1	1	43	82	12.0818
((((((((((.(((((((((....))).)))))))))))	chr7:5567372-5567616(-)$1	1	25	64	11.4224
((((((((...((...((((...))))))...)))))))	chr11:62482632-62482893(-)$1	1	80	119	12.6647
.(.(((..(((((...(((.....)))....))))))))	chr5:10258458-10258712(+)$1	1	171	210	13.5334
...(((((..(((....((......))...))).)))))	chr6:31750005-31750258(-)$1	1	10	49	14.7836
(..((((.((((.(((..((....))..)))...)))))	chr17:37009173-37009388(-)$1	1	91	130	12.6068
...((.(((((((....(((...)))....))))))).)	chr12:49666701-49666944(+)$1	1	71	110	14.2647
(((((((...(((...((((....)))).))))))))))	chr6:49573421-49573642(-)$1	1	26	65	11.9690
(((((((...(((((..(((.....)))..))))).)))	chr11:111959577-111959836(+)$1	1	164	203	12.2732
((.(((((....(((.((.(....).)).)))...))))	chr11:63742049-63742325(+)$1	1	174	213	12.8879
(.(((.(((((.....((((....))))....))))).)	chr20:33867691-33867930(-)$1	1	117	156	13.0810
((.(((...(((((((.((....)).))))))).)))))	chr6:27806310-27806559(+)$1	1	52	91	13.0739
(.(((..((.(((.(.(((.....))).).))).)))))	chr6:26200072-26200311(+)$1	1	15	54	12.7880
(.(((..(((((...((.((....)).))....))))).	chr10:102120595-102120843(+)$1	1	174	213	12.3782
(.(....((((.(.(((((....)))).).).))))...	chr16:87436551-87436796(+)$1	1	75	114	12.1849
((((..((((((....((((....))))....)))))).	chr6:33384363-33384640(-)$1	1	122	161	12.4377
((((.((...(((...((((....))))..))).)).))	chr3:179322495-179322783(+)$1	1	129	168	13.2893
((...(((((((.(((.(((....))).))).)))).))	chr10:74033597-74033862(+)$1	1	54	93	13.9069
((((((((..((((((.(((....)))..))))).)..)	chr19:13034871-13035136(-)$1	1	166	205	12.7624
((..((((.(((((.(.(((....)))...).)))))))	chr19:49119070-49119304(-)$1	1	44	83	14.7623
))))((((((((((((((((....)))))))))).....	chr12:51636093-51636374(+)$1	1	112	151	11.6469
...((((..((.((..(.(((...))).)..)).))..)	chr4:6642458-6642730(+)$1	1	116	155	11.4590
((...(((.((.((((.(((....))))))).))..)))	chr19:39329460-39329749(-)$1	1	174	213	12.2977
..((((..(((.((((.(((......)))))))...)))	chr6:30690602-30690831(+)$1	1	132	171	12.5396
((.(((...(((((((.((....)).)))))))...)))	chr17:33953688-33953937(+)$1	1	25	64	12.8992
(((....((.(((.((((......))).).))).))...	chr11:760024-760280(+)$1	1	17	56	12.7848
(.(((.(((...((((.(((....))))))).))).).)	chr8:100904144-100904380(-)$1	1	74	113	12.5130
((.((.(((((.(((((((......))))))).))))).	chr1:109968900-109969157(-)$1	1	130	169	11.4586
(..(((...(((((((.(((....))).))))...))).	chrX:47444516-47444763(+)$1	1	148	187	14.5400
((.(((((((.(((((.((....)))))...)).)))))	chr1:25664772-25665045(+)$1	1	7	46	13.1483
(((((...((((((....((....))..))))))...))	chr11:61077687-61077933(-)$1	1	44	83	12.6589
)))(((((((((((((.(((...))).)))))))))...	chr19:40327159-40327396(-)$1	1	163	202	13.1568
((.(((..((((..(.((((....)).)).)..)))).)	chr10:120938163-120938413(-)$1	1	185	224	11.9544
...(((((.(((....((((....))))...))))))))	chr19:19638764-19639011(+)$1	1	109	148	14.5522
(..(((((((((((....((....))....))).)))))	chr5:177631584-177631838(+)$1	1	163	202	13.4346
(((..((((((..(((.(((....))).)))....))))	chr17:73774637-73774881(-)$1	1	164	203	13.4621
).))))))(((((((..(((....)))...)))))))))	chr17:66033477-66033711(+)$1	1	188	227	13.3106
(((.(((((((....(((((....)))))))))))).))	chr15:72492714-72492940(-)$1	1	153	192	11.8458
((.((.((((((.(((((((......))).))))...))	chr7:99691751-99691974(-)$1	1	100	139	11.0113
((((((....(((.(((.((...)).))).)))..))))	chr15:40330409-40330661(-)$1	1	154	193	11.4158
((.(((.(((((....((((....))))..)))))))).	chr16:88876436-88876656(-)$1	1	153	192	13.6108
((((((((((((((...(((.........)))...))))	chr15:78832703-78832968(+)$1	1	135	174	11.1076
((.((((((((..(((((((....))))..)))...)))	chr17:41154620-41154860(+)$1	1	75	114	12.8360
((.((((((((.(..(.(((....))))).))).)))))	chr6:31749555-31749826(-)$1	1	82	121	15.5529
((((.(((.(((.(.(.((....)).).).))).)))))	chr19:49611182-49611406(+)$1	1	122	161	13.5027
(.(.(((((.((((((.(((....)))....)))))).)	chr22:22893144-22893399(-)$1	1	197	236	13.3970
((.((((.((((((((..(((...))).)))))...)))	chr11:85779759-85780018(-)$1	1	187	226	11.9769
((((((((((..((..((((....))))..)).))))))	chr15:72501912-72502153(-)$1	1	78	117	13.7848
((..((((.(((.(((((((....).)))))).)))..)	chr5:151174939-151175249(+)$1	1	16	55	11.2050
(((....((((.(((..((....)).))).))))...))	chr5:81574037-81574273(-)$1	1	122	161	12.0125
((((....((((...(.((......)).)..))))....	chr1:45205536-45205770(+)$1	1	14	53	13.2347
(((((((.((((.((..((......))..)).)))))))	chrX:77160604-77160877(+)$1	1	59	98	11.5010
))..((((((((((((.(((....)))))))))))))))	chr2:63821529-63821771(+)$1	1	32	71	13.4608
(((((((.(.(..(((((((....)))..))))..).))	chr7:5567811-5568021(-)$1	1	28	67	13.7885
((((((((((((((...((......))...)))))))))	chr19:40971510-40971746(-)$1	1	27	66	14.3991
((....(((.(((((..(((....)))))))))))))))	chr1:161326364-161326609(+)$1	1	36	75	13.0486
(..(((((((..((((((((....)).))))))))))))	chr19:59056223-59056464(+)$1	1	25	64	11.7947
((((((((.(((...(((.....)))....))).)))).	chr6:109703477-109703714(-)$1	1	176	215	11.3561
)))))))(((((..((.(((...)))))..)))))((((	chr19:19011089-19011332(-)$1	1	59	98	12.4354
(..(((((((((((...((......))...)))))))).	chr19:40883893-40884174(+)$1	1	170	209	12.1189
((.(((.(((...(((((......))))).))).))).)	chr10:70847771-70848004(+)$1	1	81	120	12.3138

#PSSM
c : 0.17	d : 0.17	b : 0.12	e : 0.11	f : 0.11	i : 0.06	" : 0.04	g : 0.04	= : 0.04	h : 0.03	[ : 0.01	# : 0.01	! : 0.01	
d : 0.14	c : 0.11	e : 0.11	f : 0.09	! : 0.09	[ : 0.09	b : 0.08	i : 0.04	" : 0.04	g : 0.04	= : 0.04	a : 0.01	# : 0.01	h : 0.01	] : 0.01	
[ : 0.20	! : 0.11	c : 0.09	f : 0.09	d : 0.09	" : 0.08	e : 0.06	g : 0.04	= : 0.04	i : 0.03	# : 0.03	a : 0.03	h : 0.01	b : 0.01	: : 0.01	
c : 0.20	e : 0.14	d : 0.12	g : 0.08	b : 0.06	# : 0.06	f : 0.04	h : 0.04	! : 0.04	= : 0.04	i : 0.03	" : 0.03	[ : 0.03	: : 0.01	
c : 0.20	e : 0.12	d : 0.12	g : 0.09	# : 0.08	f : 0.06	b : 0.04	h : 0.04	= : 0.04	i : 0.03	! : 0.03	[ : 0.03	" : 0.03	a : 0.01	
c : 0.19	d : 0.12	e : 0.11	[ : 0.09	g : 0.09	# : 0.08	i : 0.04	h : 0.04	! : 0.04	f : 0.04	= : 0.04	b : 0.03	" : 0.01	
e : 0.14	d : 0.11	g : 0.11	c : 0.09	! : 0.08	# : 0.08	h : 0.06	" : 0.06	f : 0.06	b : 0.04	i : 0.04	= : 0.04	[ : 0.03	
e : 0.19	c : 0.11	" : 0.11	d : 0.09	i : 0.06	! : 0.06	[ : 0.06	g : 0.06	f : 0.06	b : 0.04	h : 0.04	# : 0.03	= : 0.03	
c : 0.12	e : 0.12	d : 0.12	" : 0.11	[ : 0.09	g : 0.08	f : 0.06	! : 0.04	h : 0.04	# : 0.03	b : 0.03	i : 0.03	a : 0.03	= : 0.03	
c : 0.16	e : 0.14	d : 0.12	g : 0.11	" : 0.08	[ : 0.08	f : 0.06	# : 0.04	h : 0.04	! : 0.03	b : 0.03	i : 0.03	= : 0.03	
c : 0.24	e : 0.16	d : 0.12	g : 0.08	f : 0.06	" : 0.04	h : 0.04	# : 0.03	[ : 0.03	a : 0.03	= : 0.03	b : 0.03	i : 0.03	! : 0.03	
c : 0.19	e : 0.16	[ : 0.12	f : 0.08	d : 0.08	! : 0.08	g : 0.06	# : 0.04	b : 0.03	= : 0.03	" : 0.03	i : 0.03	$ : 0.01	h : 0.01	
c : 0.16	e : 0.11	[ : 0.09	# : 0.08	g : 0.08	! : 0.08	f : 0.06	b : 0.06	" : 0.06	d : 0.06	a : 0.03	= : 0.03	i : 0.03	$ : 0.01	h : 0.01	
c : 0.16	" : 0.11	e : 0.11	# : 0.09	d : 0.09	f : 0.08	g : 0.06	[ : 0.06	b : 0.04	! : 0.04	= : 0.03	i : 0.03	$ : 0.01	a : 0.01	h : 0.01	
c : 0.16	" : 0.16	# : 0.12	d : 0.09	e : 0.08	f : 0.06	g : 0.06	a : 0.06	! : 0.04	[ : 0.03	= : 0.03	b : 0.03	$ : 0.01	i : 0.01	
c : 0.14	" : 0.11	# : 0.11	! : 0.11	d : 0.11	[ : 0.06	f : 0.06	e : 0.06	a : 0.06	g : 0.04	b : 0.03	= : 0.03	$ : 0.01	i : 0.01	
[ : 0.29	d : 0.20	! : 0.11	c : 0.08	# : 0.06	f : 0.04	b : 0.04	" : 0.04	a : 0.03	e : 0.03	= : 0.01	g : 0.01	
c : 0.40	b : 0.19	d : 0.17	[ : 0.04	! : 0.03	# : 0.03	e : 0.03	f : 0.03	o : 0.01	= : 0.01	g : 0.01	
c : 0.40	b : 0.27	d : 0.17	o : 0.04	[ : 0.01	= : 0.01	g : 0.01	e : 0.01	f : 0.01	n : 0.01	
c : 0.37	d : 0.16	o : 0.14	b : 0.11	m : 0.09	n : 0.04	a : 0.03	= : 0.01	e : 0.01	
m : 0.61	o : 0.19	l : 0.08	n : 0.06	c : 0.03	r : 0.01	
m : 0.61	o : 0.19	l : 0.11	n : 0.06	r : 0.01	
m : 0.61	o : 0.19	l : 0.11	n : 0.06	r : 0.01	
m : 0.51	o : 0.17	b : 0.09	c : 0.06	n : 0.04	d : 0.03	l : 0.03	a : 0.01	r : 0.01	
c : 0.37	b : 0.19	d : 0.16	o : 0.14	a : 0.03	e : 0.03	] : 0.01	n : 0.01	= : 0.01	r : 0.01	
c : 0.41	b : 0.17	d : 0.16	] : 0.11	o : 0.04	e : 0.03	= : 0.01	g : 0.01	r : 0.01	
c : 0.41	d : 0.17	b : 0.11	] : 0.06	4 : 0.04	g : 0.04	2 : 0.03	e : 0.03	= : 0.01	r : 0.01	a : 0.01	f : 0.01	
d : 0.17	] : 0.17	c : 0.11	b : 0.08	4 : 0.08	3 : 0.08	2 : 0.08	g : 0.04	e : 0.04	= : 0.03	f : 0.03	i : 0.01	r : 0.01	a : 0.01	
2 : 0.16	4 : 0.11	3 : 0.11	c : 0.11	a : 0.11	d : 0.06	f : 0.06	e : 0.06	b : 0.04	g : 0.04	] : 0.03	= : 0.03	i : 0.01	r : 0.01	
] : 0.16	2 : 0.14	3 : 0.12	4 : 0.12	d : 0.09	c : 0.09	f : 0.06	g : 0.06	e : 0.04	= : 0.03	i : 0.01	b : 0.01	
c : 0.30	d : 0.11	g : 0.09	e : 0.09	4 : 0.08	f : 0.06	3 : 0.04	a : 0.04	= : 0.03	2 : 0.03	i : 0.03	b : 0.03	h : 0.01	
c : 0.27	e : 0.11	g : 0.09	] : 0.09	d : 0.09	f : 0.08	4 : 0.06	b : 0.04	3 : 0.03	= : 0.03	i : 0.03	2 : 0.01	h : 0.01	
c : 0.25	e : 0.12	d : 0.12	f : 0.08	g : 0.08	3 : 0.06	i : 0.04	b : 0.04	] : 0.04	h : 0.03	4 : 0.03	= : 0.03	2 : 0.01	
] : 0.20	e : 0.14	3 : 0.12	d : 0.11	f : 0.06	g : 0.06	c : 0.06	2 : 0.04	i : 0.04	= : 0.04	h : 0.03	b : 0.01	4 : 0.01	
e : 0.20	3 : 0.16	d : 0.11	c : 0.09	g : 0.08	2 : 0.06	b : 0.06	i : 0.04	h : 0.04	f : 0.03	= : 0.03	] : 0.01	> : 0.01	4 : 0.01	
e : 0.19	d : 0.14	c : 0.11	3 : 0.11	g : 0.08	b : 0.06	i : 0.04	h : 0.04	f : 0.04	] : 0.03	a : 0.03	= : 0.03	> : 0.01	2 : 0.01	4 : 0.01	
c : 0.19	e : 0.17	d : 0.09	g : 0.09	3 : 0.08	h : 0.06	] : 0.06	f : 0.04	2 : 0.04	i : 0.03	4 : 0.03	= : 0.03	> : 0.01	a : 0.01	
c : 0.17	e : 0.16	d : 0.12	] : 0.09	h : 0.06	g : 0.06	f : 0.06	i : 0.04	2 : 0.04	3 : 0.03	4 : 0.03	= : 0.03	> : 0.01	F : 0.01	a : 0.01	
c : 0.17	e : 0.16	d : 0.14	g : 0.08	2 : 0.06	] : 0.04	i : 0.04	h : 0.04	3 : 0.04	f : 0.04	b : 0.03	4 : 0.03	= : 0.03	> : 0.01	F : 0.01	

#score	791.2200042794955
#seq	62
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_UTR_m3_run1.txt

#BEAR
!!ccc[ccc!!bbaooooooa]bb22ccc]ccc2	chr1:47684850-47685137(-)$1	287	7	41	14.7679
e!!bb===========mmmm===========]bb	chr1:156712801-156713079(-)$1	278	120	154	11.5704
e!!bb!!gggggggooooooggggggg22bb]ee	chr10:74127783-74128059(-)$1	276	7	41	14.1004
[ggggggg####bboooooobb4444ggggggg]	chr19:49469954-49470186(+)$1	232	12	46	16.4447
:==========[bboooooobb333=========	chr17:47788612-47788888(-)$1	276	66	100	17.1696
:cccffffff!!bboooooobb22ffffff]ccc	chr1:22149033-22149331(-)$1	298	187	221	12.5421
========[a[cccnnnnnccc]a]=========	chr12:49523206-49523491(-)$1	285	109	143	14.5433
==========[cccooooooccc===========	chr1:26607582-26607999(+)$1	417	319	353	18.1074
eeeee[a[bb[cccooooooccc]bba]eeeee2	chr11:63743814-63744077(+)$1	263	139	173	14.3016
==========[ddddmmmmdddd===========	chr11:126133014-126133276(-)$1	262	92	126	12.5724
iiiii$$$$$ddddoooooodddd4444iiiiii	chr11:62392657-62392932(-)$1	275	193	227	15.5366
eeee[dddd"""bboooooobb4444ddddeeee	chr12:48189041-48189317(-)$1	276	160	194	14.2334
$hhhhhhhh"""bboooooobb22hhhhhhhh33	chr17:72764933-72765176(+)$1	243	107	141	12.9533
ddd[bbbb!!a[bboooooobb]a22bb]bb]dd	chr11:61732060-61732307(-)$1	247	62	96	12.9960
eeee!!dddd[cccooooooccc]dddd333eee	chr4:1986452-1986743(-)$1	291	219	253	14.6143
==========acccooooooccc]a333======	chr1:67878766-67879047(-)$1	281	104	138	17.9427
:ccc####ffffffooooooffffff333ccc:g	chr16:30096426-30096687(+)$1	261	153	187	12.0209
==$$$$$ccc!!cccmmmmccc22ccc333====	chr16:204311-204520(+)$1	209	102	136	11.4212
chhhhhhhh"""bboooooobb333hhhhhhhh3	chr19:40884066-40884382(+)$1	316	2	36	13.7217
gggg!!ccca[ddddnnnnndddd22a]ccc]gg	chr12:57023849-57024182(-)$1	333	241	275	11.9573
iiiii$$$$$ddddoooooodddd4444iiiiii	chr11:62392552-62392818(-)$1	266	79	113	15.5366
''''ccc!!a[cccooooooccc]a333ccc777	chr19:2755636-2755891(-)$1	255	65	99	12.3447
ddd####gggggggoooooogggggggdddd]ee	chr2:172016864-172017180(-)$1	316	267	301	13.8505
d!!ccc!!ccc[bboooooobbccc]ccc22ddd	chr9:131910555-131910864(+)$1	309	266	300	14.2921
e[bb[a[iiiiiiiiillliiiiiiiii]a]bb]	chr7:6063985-6064274(-)$1	289	30	64	10.8867
b[ffffffa!!cccooooooccc22a]ffffffb	chr10:121355849-121356125(-)$1	276	132	166	14.3651
==!!eeeee[bb[aooooooa]bbeeeee]====	chr2:70889487-70889741(-)$1	254	22	56	13.2731
========"""cccnnnnnccc333=========	chr7:30963543-30963826(+)$1	283	183	217	15.2272
ff[ccc[ccc[cccnnnnnccc]ccc]ccc]fff	chr19:1497269-1497601(+)$1	332	173	207	11.8965
:==========[bboooooobb333=========	chr17:47788688-47788956(-)$1	268	134	168	17.1696
b[dddd[a[eeeeeooooooeeeeea]dddd333	chr12:49524979-49525255(-)$1	276	163	197	12.8374
iiiiii####ddddoooooodddd22iiiiiiii	chr5:126112976-126113303(+)$1	327	75	109	16.3363
ggggggg[bb[cccoooooocccbbggggggg]a	chr2:27193497-27193765(+)$1	268	160	194	15.1904
[ccceeeee"""bboooooobb333eeeee22cc	chr1:156109020-156109283(+)$1	263	218	252	14.7249
hhhhh[acccbbbboooooobb]bb]ccc4444a	chr9:123619768-123620057(-)$1	289	228	262	13.5693
e"""ccc"""ddddooooooddddccc333eeee	chr17:79890435-79890682(-)$1	247	76	110	15.0849
"bb"""eeeee[bboooooobb]eeeee4444bb	chr1:153634719-153634987(-)$1	268	179	213	13.4783
eeee####ffffffooooooffffff]eeeee]c	chr7:100075662-100075986(-)$1	324	245	279	12.8431
bb[bb[ccc[ddddoooooodddd]ccc]bb]bb	chr11:763749-763995(+)$1	246	118	152	13.6037
ccc!!eeeee[cccooooooccceeeee]ccc22	chr11:65422139-65422532(-)$1	393	297	331	14.5344
:ggggggg!!ddddoooooodddd22ggggggg:	chr8:101721323-101721551(-)$1	228	193	227	13.6751
[a[a!!dddd[cccnnnnnccc]dddd22a]aee	chr16:28834318-28834590(+)$1	272	6	40	11.1445
"iiiiiiiii[ccclllccciiiiiiiii]eeee	chr19:47991328-47991562(-)$1	234	49	83	11.9275
eeeee!!ccc[cccnnnnnccc]ccc22eeeee]	chr19:1010282-1010548(-)$1	266	181	215	11.5667
ffffff"""eeeeeooooooeeeee4444fffff	chr11:8008807-8009085(+)$1	278	19	53	12.6670
!!dddd[bb!!cccooooooccc]bb]dddd22a	chr12:48187071-48187424(-)$1	353	110	144	14.0425
cc####ddddddddoooooodddd]dddd4444c	chrX:152961349-152961612(+)$1	263	41	75	13.6361
ciiiiiiiii[ddddllldddd]iiiiiiiii33	chr11:64532553-64532809(-)$1	256	119	153	12.4201
ddccccccccccccooooooccc22ccc]ccc:H	chr8:99057638-99057871(-)$1	233	139	173	13.3771
ffffff[bb[ddddooooooddddbb]ffffff2	chr15:89442287-89442603(-)$1	316	192	226	12.4783
eeee[eeeeeddddoooooodddd22eeeee]ee	chr19:56206648-56206866(+)$1	218	82	116	13.4082

#otherMatches

#Seq PSSM
CCCAAAUCCUUCCCAAGUAAGAGGCUGGAGUUGU	chr1:47684850-47685137(-)$1	287	7	41	14.7679
CUAUUUUCCAGGCUUCUGCUGGGGCCUGGGACAA	chr1:156712801-156713079(-)$1	278	120	154	11.5704
CCUGGAAAAGCCCAAAGACAUGGGUUUCACUCGC	chr10:74127783-74128059(-)$1	276	7	41	14.1004
AAAGGCUCACUCUCAAGCACGACUAAGAGCCUUC	chr19:49469954-49470186(+)$1	232	12	46	16.4447
UGAUGAAGCCCCUCUUCCCCGGCAUGGGCUUCAU	chr17:47788612-47788888(-)$1	276	66	100	17.1696
GCUGUAAGGGAAGGCCCACCCCAACUCUUACCAG	chr1:22149033-22149331(-)$1	298	187	221	12.5421
GGGGGAGGAGAUGACUCCUUCAACACCUUCUUCA	chr12:49523206-49523491(-)$1	285	109	143	14.5433
GGCUGAUGGGCACCUCUGUUGGUUCCAUCAGCCA	chr1:26607582-26607999(+)$1	417	319	353	18.1074
GGGGGUCACUGACCCUGCUUGGUGGGGUCCCCCU	chr11:63743814-63744077(+)$1	263	139	173	14.3016
AGGAGCUCAGCUGCAGCGUUGCAUUGGGCUUCUU	chr11:126133014-126133276(-)$1	262	92	126	12.5724
UGAGGUUGCUAAAGAACAUCCUUUUCCCUCUCAU	chr11:62392657-62392932(-)$1	275	193	227	15.5366
GGCUUGGGCCCUUGCCCUUCCACUUUGCCCAGUC	chr12:48189041-48189317(-)$1	276	160	194	14.2334
GGGUGUCCCUUUGCCACCCUGCCUGGGACAUCGC	chr17:72764933-72765176(+)$1	243	107	141	12.9533
AUCUCUUUGACAAGCACACCCUGGGAGACAGUGA	chr11:61732060-61732307(-)$1	247	62	96	12.9960
UGGCCCCAGCCUGGAACCAGCCAAGCUGCCUGCC	chr4:1986452-1986743(-)$1	291	219	253	14.6143
AGUGCUUCUGCUCCUGAUGUGGAUGACCCAGAGG	chr1:67878766-67879047(-)$1	281	104	138	17.9427
UGAACCAUGAAGUUUCCAAUAAuuuuuuuuucuu	chr16:30096426-30096687(+)$1	261	153	187	12.0209
ACCCCCAGGACAGGCUGCGGCCCCUCCCCCGUCC	chr16:204311-204520(+)$1	209	102	136	11.4212
CGCCUGCUCUGAGGCCCGAUCCAGUGGGCAGGCC	chr19:40884066-40884382(+)$1	316	2	36	13.7217
AGCCCCGAGCCCGGCUGGACGCCGCUGCCUCAGG	chr12:57023849-57024182(-)$1	333	241	275	11.9573
UGAGGUUGCUAAAGAACAUCCUUUUCCCUCUCAU	chr11:62392552-62392818(-)$1	266	79	113	15.5366
CCUCGGACCUGCAUGUCAAGAUGGAUUUUCCCCU	chr19:2755636-2755891(-)$1	255	65	99	12.3447
GUUUGGAGGGGCCGCCAUCUUGGUCCCAGCUCUC	chr2:172016864-172017180(-)$1	316	267	301	13.8505
CAGGCUUUGGCACUCAGAAUGGGCCCAGUGGGGG	chr9:131910555-131910864(+)$1	309	266	300	14.2921
UAUAGUUGGUACAAUGCUUCGUUGUAUUUAGUAA	chr7:6063985-6064274(-)$1	289	30	64	10.8867
CUCCGUCGCACCCACCAUGAUGGAAGACGACGGG	chr10:121355849-121356125(-)$1	276	132	166	14.3651
UGGCUUUGGGUUGUAUAAGGAGGAUCAAAACAAC	chr2:70889487-70889741(-)$1	254	22	56	13.2731
GGGCAAGCUUUGCUCCUUCAGUUCUGCUUGCUCC	chr7:30963543-30963826(+)$1	283	183	217	15.2272
CUGUGGCUCCCGCCUGUCCGGCAGGGCCCAGGGC	chr19:1497269-1497601(+)$1	332	173	207	11.8965
UGAUGAAGCCCCUCUUCCCCGGCAUGGGCUUCAU	chr17:47788688-47788956(-)$1	268	134	168	17.1696
CUAGCCACUAUGGUGAGUAAGCCGUGCGGCUCCC	chr12:49524979-49525255(-)$1	276	163	197	12.8374
GGUGCUUCUCCGUUCCUCUAAACGCCAGCGUCUG	chr5:126112976-126113303(+)$1	327	75	109	16.3363
cgccUCGUGCACUGUGAGUCCGGGCCGAGGCGAC	chr2:27193497-27193765(+)$1	268	160	194	15.1904
AGGCUAGCUUCUGCUUUUCUGCCCUGGCUGCUGC	chr1:156109020-156109283(+)$1	263	218	252	14.7249
GUCCCUCCACUGGAUCCCCUUCACACGUGACCCG	chr9:123619768-123620057(-)$1	289	228	262	13.5693
GAAGGGCCACAGCCCCUCUUGGCUGCCAAGCACG	chr17:79890435-79890682(-)$1	247	76	110	15.0849
GCUUUACAUGGUGACAGACAUUUCCGUGGGAUAG	chr1:153634719-153634987(-)$1	268	179	213	13.4783
CUUGUUCCAGGGGUGCCUGAGCCCCUUCAAGGAG	chr7:100075662-100075986(-)$1	324	245	279	12.8431
CACCAUCUCACCCAAGCUCCUGGGAGAGCUGCUG	chr11:763749-763995(+)$1	246	118	152	13.6037
CCUGCCCCCAAGCCCACCCAGGCUGGGGAAGGAA	chr11:65422139-65422532(-)$1	393	297	331	14.5344
AAGUCUUUUUUCUUUUAAUUAAGGUUGGGGAUUG	chr8:101721323-101721551(-)$1	228	193	227	13.6751
CGCGCACGCGCGCCAGCCCGGCUCGCGCCCUCUC	chr16:28834318-28834590(+)$1	272	6	40	11.1445
UGUCCCAUCUGCUCAGAGAGAGGUGGGGCCGAGA	chr19:47991328-47991562(-)$1	234	49	83	11.9275
CUCGGAGGUGGGGUCCUGAGCCGCACAGCUGAGC	chr19:1010282-1010548(-)$1	266	181	215	11.5667
UAUUCAGCCUAUCAAGCUCCUGAUAUUCAUGAAU	chr11:8008807-8009085(+)$1	278	19	53	12.6670
GACACUGUGCUGCUUCCUCUGGCCCAGGGUGGGC	chr12:48187071-48187424(-)$1	353	110	144	14.0425
AAAACUUGAGAGAAUGAGAUUUCUGCUUGUAUAU	chrX:152961349-152961612(+)$1	263	41	75	13.6361
AGUUCUCCUUCCCUUACCAAGGAGAGGGGAGCAA	chr11:64532553-64532809(-)$1	256	119	153	12.4201
AGUGGGCUCCUACCGACCGAGGUUUAGGCAGCGC	chr8:99057638-99057871(-)$1	233	139	173	13.3771
UCCUCACUGUCCUGUUUUCUUAGGCACUGAGGGA	chr15:89442287-89442603(-)$1	316	192	226	12.4783
GGAAGGGGGCCUGGCUCCAUCCGGCUGCCCCAUU	chr19:56206648-56206866(+)$1	218	82	116	13.4082

#DB
..(((.(((..(((......).))..))).))).	chr1:47684850-47685137(-)$1	1	7	41	14.7679
(..(((((((((((((....))))))))))).))	chr1:156712801-156713079(-)$1	1	120	154	11.5704
(..((..(((((((......)))))))..)).))	chr10:74127783-74128059(-)$1	1	7	41	14.1004
.(((((((....((......))....))))))).	chr19:49469954-49470186(+)$1	1	12	46	16.4447
.((((((((((.((......))...)))))))))	chr17:47788612-47788888(-)$1	1	66	100	17.1696
.(((((((((..((......))..)))))).)))	chr1:22149033-22149331(-)$1	1	187	221	12.5421
((((((((.(.(((.....))).).)))))))))	chr12:49523206-49523491(-)$1	1	109	143	14.5433
((((((((((.(((......))))))))))))))	chr1:26607582-26607999(+)$1	1	319	353	18.1074
(((((.(.((.(((......))).))).))))).	chr11:63743814-63744077(+)$1	1	139	173	14.3016
((((((((((.((((....)))))))))))))))	chr11:126133014-126133276(-)$1	1	92	126	12.5724
(((((.....((((......))))....))))))	chr11:62392657-62392932(-)$1	1	193	227	15.5366
((((.((((...((......))....))))))))	chr12:48189041-48189317(-)$1	1	160	194	14.2334
.((((((((...((......))..))))))))..	chr17:72764933-72765176(+)$1	1	107	141	12.9533
(((.((((..(.((......)).)..)).)).))	chr11:61732060-61732307(-)$1	1	62	96	12.9960
((((..((((.(((......))).))))...)))	chr4:1986452-1986743(-)$1	1	219	253	14.6143
((((((((((((((......))).)...))))))	chr1:67878766-67879047(-)$1	1	104	138	17.9427
.(((....((((((......))))))...))).(	chr16:30096426-30096687(+)$1	1	153	187	12.0209
((.....(((..(((....)))..)))...))))	chr16:204311-204520(+)$1	1	102	136	11.4212
(((((((((...((......))...)))))))).	chr19:40884066-40884382(+)$1	1	2	36	13.7217
((((..((((.((((.....))))..).))).))	chr12:57023849-57024182(-)$1	1	241	275	11.9573
(((((.....((((......))))....))))))	chr11:62392552-62392818(-)$1	1	79	113	15.5366
....(((..(.(((......))).)...)))...	chr19:2755636-2755891(-)$1	1	65	99	12.3447
(((....(((((((......))))))))))).))	chr2:172016864-172017180(-)$1	1	267	301	13.8505
(..(((..(((.((......))))).)))..)))	chr9:131910555-131910864(+)$1	1	266	300	14.2921
(.((.(.(((((((((...))))))))).).)).	chr7:6063985-6064274(-)$1	1	30	64	10.8867
(.(((((((..(((......)))..).)))))))	chr10:121355849-121356125(-)$1	1	132	166	14.3651
((..(((((.((.(......).))))))).))))	chr2:70889487-70889741(-)$1	1	22	56	13.2731
((((((((...(((.....)))...)))))))))	chr7:30963543-30963826(+)$1	1	183	217	15.2272
((.(((.(((.(((.....))).))).))).)))	chr19:1497269-1497601(+)$1	1	173	207	11.8965
.((((((((((.((......))...)))))))))	chr17:47788688-47788956(-)$1	1	134	168	17.1696
(.((((.(.(((((......)))))).))))...	chr12:49524979-49525255(-)$1	1	163	197	12.8374
((((((....((((......))))..))))))))	chr5:126112976-126113303(+)$1	1	75	109	16.3363
(((((((.((.(((......)))))))))))).)	chr2:27193497-27193765(+)$1	1	160	194	15.1904
.((((((((...((......))...)))))..))	chr1:156109020-156109283(+)$1	1	218	252	14.7249
(((((.((((((((......)).)).)))....)	chr9:123619768-123620057(-)$1	1	228	262	13.5693
(...(((...((((......)))))))...))))	chr17:79890435-79890682(-)$1	1	76	110	15.0849
.((...(((((.((......)).)))))....))	chr1:153634719-153634987(-)$1	1	179	213	13.4783
((((....((((((......)))))).))))).)	chr7:100075662-100075986(-)$1	1	245	279	12.8431
((.((.(((.((((......)))).))).)).))	chr11:763749-763995(+)$1	1	118	152	13.6037
(((..(((((.(((......)))))))).)))..	chr11:65422139-65422532(-)$1	1	297	331	14.5344
.(((((((..((((......))))..))))))).	chr8:101721323-101721551(-)$1	1	193	227	13.6751
.(.(..((((.(((.....))).))))..).)))	chr16:28834318-28834590(+)$1	1	6	40	11.1445
.(((((((((.(((...)))))))))))).))))	chr19:47991328-47991562(-)$1	1	49	83	11.9275
(((((..(((.(((.....))).)))..))))).	chr19:1010282-1010548(-)$1	1	181	215	11.5667
((((((...(((((......)))))....)))))	chr11:8008807-8009085(+)$1	1	19	53	12.6670
..((((.((..(((......))).)).))))..)	chr12:48187071-48187424(-)$1	1	110	144	14.0425
((....((((((((......)))).))))....)	chrX:152961349-152961612(+)$1	1	41	75	13.6361
((((((((((.((((...)))).)))))))))..	chr11:64532553-64532809(-)$1	1	119	153	12.4201
)))))(((((((((......)))..))).))).)	chr8:99057638-99057871(-)$1	1	139	173	13.3771
((((((.((.((((......)))))).)))))).	chr15:89442287-89442603(-)$1	1	192	226	12.4783
((((.(((((((((......))))..))))).))	chr19:56206648-56206866(+)$1	1	82	116	13.4082

#PSSM
e : 0.19	= : 0.13	: : 0.09	d : 0.07	c : 0.07	[ : 0.05	i : 0.05	b : 0.05	f : 0.05	! : 0.03	g : 0.03	" : 0.03	$ : 0.01	' : 0.01	h : 0.01	
= : 0.17	e : 0.11	! : 0.09	c : 0.09	i : 0.09	g : 0.07	h : 0.05	d : 0.05	[ : 0.05	f : 0.05	b : 0.03	' : 0.01	" : 0.01	a : 0.01	
= : 0.13	c : 0.11	e : 0.11	i : 0.09	! : 0.07	g : 0.07	d : 0.07	h : 0.05	f : 0.05	[ : 0.05	b : 0.03	$ : 0.01	' : 0.01	" : 0.01	# : 0.01	
c : 0.13	= : 0.13	e : 0.11	i : 0.09	b : 0.07	g : 0.07	h : 0.05	f : 0.05	# : 0.03	! : 0.03	d : 0.03	" : 0.03	[ : 0.01	$ : 0.01	' : 0.01	a : 0.01	
= : 0.13	c : 0.11	i : 0.09	b : 0.07	f : 0.07	e : 0.07	! : 0.07	# : 0.07	g : 0.05	[ : 0.05	h : 0.05	d : 0.03	$ : 0.01	" : 0.01	
= : 0.15	! : 0.09	c : 0.09	[ : 0.07	f : 0.07	# : 0.07	e : 0.07	g : 0.05	$ : 0.05	d : 0.05	i : 0.05	h : 0.03	b : 0.01	a : 0.01	" : 0.01	
= : 0.15	c : 0.11	[ : 0.09	e : 0.09	d : 0.07	# : 0.07	! : 0.05	g : 0.05	$ : 0.05	f : 0.03	a : 0.03	h : 0.03	i : 0.03	b : 0.01	" : 0.01	
c : 0.15	= : 0.15	e : 0.09	g : 0.07	d : 0.07	b : 0.05	# : 0.05	i : 0.05	f : 0.03	[ : 0.03	$ : 0.03	h : 0.03	! : 0.03	" : 0.03	a : 0.01	
c : 0.17	= : 0.11	e : 0.09	b : 0.07	d : 0.07	f : 0.05	! : 0.05	i : 0.05	" : 0.05	g : 0.03	# : 0.03	[ : 0.03	$ : 0.03	h : 0.03	a : 0.01	
= : 0.11	" : 0.11	c : 0.11	! : 0.09	e : 0.09	f : 0.05	a : 0.05	d : 0.05	i : 0.05	[ : 0.05	g : 0.03	# : 0.03	b : 0.03	$ : 0.03	
[ : 0.27	d : 0.17	! : 0.09	" : 0.09	= : 0.05	e : 0.05	g : 0.03	a : 0.03	f : 0.03	c : 0.03	b : 0.03	# : 0.01	i : 0.01	
c : 0.31	d : 0.23	[ : 0.09	" : 0.07	b : 0.05	g : 0.03	! : 0.03	f : 0.03	e : 0.03	= : 0.01	# : 0.01	i : 0.01	
c : 0.33	b : 0.25	d : 0.23	g : 0.03	f : 0.03	e : 0.03	= : 0.01	i : 0.01	[ : 0.01	
c : 0.33	b : 0.23	d : 0.23	a : 0.03	g : 0.03	f : 0.03	e : 0.03	= : 0.01	i : 0.01	
o : 0.76	n : 0.09	d : 0.05	= : 0.01	c : 0.01	i : 0.01	l : 0.01	
o : 0.76	n : 0.11	m : 0.03	l : 0.03	= : 0.01	i : 0.01	
o : 0.76	n : 0.11	m : 0.05	l : 0.05	
o : 0.76	n : 0.11	m : 0.05	l : 0.03	c : 0.01	
o : 0.76	n : 0.11	m : 0.05	l : 0.01	c : 0.01	d : 0.01	
o : 0.76	c : 0.13	d : 0.03	m : 0.01	n : 0.01	i : 0.01	
c : 0.31	b : 0.23	d : 0.23	a : 0.03	g : 0.03	f : 0.03	i : 0.03	e : 0.03	= : 0.01	
c : 0.31	b : 0.23	d : 0.23	] : 0.03	g : 0.03	f : 0.03	i : 0.03	e : 0.03	= : 0.01	
c : 0.21	d : 0.21	] : 0.15	3 : 0.09	2 : 0.05	b : 0.03	g : 0.03	4 : 0.03	f : 0.03	i : 0.03	e : 0.03	= : 0.01	
d : 0.21	3 : 0.09	2 : 0.09	] : 0.09	b : 0.07	e : 0.07	= : 0.05	c : 0.05	i : 0.05	g : 0.03	4 : 0.03	a : 0.03	f : 0.03	
2 : 0.15	3 : 0.09	b : 0.09	c : 0.09	e : 0.09	4 : 0.07	= : 0.05	f : 0.05	] : 0.05	i : 0.05	g : 0.03	d : 0.03	a : 0.03	h : 0.01	
= : 0.13	2 : 0.11	c : 0.11	4 : 0.09	e : 0.07	g : 0.05	f : 0.05	b : 0.05	d : 0.05	i : 0.05	h : 0.03	3 : 0.03	] : 0.03	a : 0.03	
c : 0.13	= : 0.13	] : 0.11	g : 0.09	e : 0.09	d : 0.07	i : 0.07	4 : 0.05	3 : 0.05	a : 0.03	h : 0.03	f : 0.01	b : 0.01	2 : 0.01	
= : 0.13	c : 0.11	d : 0.11	e : 0.11	3 : 0.09	i : 0.07	2 : 0.05	g : 0.05	f : 0.05	4 : 0.05	] : 0.03	h : 0.03	b : 0.01	
= : 0.15	c : 0.11	e : 0.11	i : 0.09	d : 0.09	] : 0.09	3 : 0.07	g : 0.05	f : 0.05	2 : 0.03	h : 0.03	4 : 0.03	
= : 0.15	c : 0.11	e : 0.09	f : 0.07	i : 0.07	d : 0.07	] : 0.05	b : 0.05	g : 0.05	3 : 0.05	4 : 0.05	h : 0.03	a : 0.03	2 : 0.01	
= : 0.19	e : 0.13	c : 0.11	] : 0.07	i : 0.07	b : 0.05	g : 0.05	d : 0.05	f : 0.05	4 : 0.05	h : 0.03	2 : 0.03	3 : 0.01	
= : 0.17	] : 0.13	e : 0.13	c : 0.09	i : 0.07	f : 0.07	g : 0.05	4 : 0.05	h : 0.03	2 : 0.03	7 : 0.01	d : 0.01	b : 0.01	3 : 0.01	a : 0.01	
e : 0.19	= : 0.17	b : 0.07	f : 0.07	c : 0.05	g : 0.05	i : 0.05	3 : 0.05	d : 0.03	: : 0.03	] : 0.03	4 : 0.03	2 : 0.03	h : 0.01	7 : 0.01	
= : 0.17	e : 0.15	2 : 0.07	b : 0.07	c : 0.07	3 : 0.07	] : 0.05	i : 0.05	a : 0.05	d : 0.03	g : 0.03	f : 0.03	7 : 0.01	: : 0.01	H : 0.01	

#score	704.9075680743829
#seq	51
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_CDS_m3_run1.txt

#BEAR
EE::::EEEEEIIIIIIIII::::::::	chr19:42401913-42402205(+)$1	292	75	103	12.4120
EEE}CCCYYFFFFFF}FFFFFF}CCCff	chr4:152200978-152201259(-)$1	281	219	247	11.2806
::::::EEEEE{IIIIIIIII{BBLLLC	chr21:45879948-45880256(+)$1	308	27	55	12.5767
E{BB:::::::FFFFFF{CCC{CCC::b	chr19:11257826-11258121(-)$1	295	9	37	9.4914
:::CCCZZZDDDD}GGGGGGG:::::::	chr5:137803447-137803736(+)$1	289	207	235	11.0811
ZZZBBYYDDDDCCCHHHHHHHHYYBB}F	chr16:30675650-30675929(+)$1	279	200	228	11.9483
@@@@@@@@@@@HHHHHHHHYYCCC::::	chr7:98507763-98508028(+)$1	265	236	264	11.5243

#otherMatches

#Seq PSSM
gucucugucccuguccugguuucucuuc	chr19:42401913-42402205(+)$1	292	75	103	12.4120
GGUCAAAGUGUAGGCUGACCUGCCAAGG	chr4:152200978-152201259(-)$1	281	219	247	11.2806
AGUCCUCAGCGCUCCCGGGGUACAGCCC	chr21:45879948-45880256(+)$1	308	27	55	12.5767
augagccgagaucgcaccacuguacucc	chr19:11257826-11258121(-)$1	295	9	37	9.4914
UCCCGGCCCAGGUCAGCAGCUUCCCUUC	chr5:137803447-137803736(+)$1	289	207	235	11.0811
CCUGGCCGGGGGGUGGGGGGCCAUCACC	chr16:30675650-30675929(+)$1	279	200	228	11.9483
AAGACAAUCACGUGGGGCAUAACAUCAU	chr7:98507763-98508028(+)$1	265	236	264	11.5243

#DB
((....((((((((((((((........	chr19:42401913-42402205(+)$1	1	75	103	12.4120
))).)))..)))))).)))))).)))((	chr4:152200978-152201259(-)$1	1	219	247	11.2806
......(((((.(((((((((.((...(	chr21:45879948-45880256(+)$1	1	27	55	12.5767
(.((.......((((((.(((.(((..(	chr19:11257826-11258121(-)$1	1	9	37	9.4914
...)))...)))).))))))).......	chr5:137803447-137803736(+)$1	1	207	235	11.0811
...))..)))))))))))))))..)).)	chr16:30675650-30675929(+)$1	1	200	228	11.9483
...........))))))))..)))....	chr7:98507763-98508028(+)$1	1	236	264	11.5243

#PSSM
E : 0.42	: : 0.28	Z : 0.14	@ : 0.14	
E : 0.28	: : 0.28	{ : 0.14	Z : 0.14	@ : 0.14	
: : 0.42	E : 0.14	B : 0.14	Z : 0.14	@ : 0.14	
: : 0.28	B : 0.28	} : 0.14	C : 0.14	@ : 0.14	
: : 0.42	C : 0.28	B : 0.14	@ : 0.14	
: : 0.42	C : 0.28	Y : 0.14	@ : 0.14	
E : 0.28	C : 0.14	: : 0.14	Z : 0.14	Y : 0.14	@ : 0.14	
E : 0.28	Y : 0.14	: : 0.14	Z : 0.14	D : 0.14	@ : 0.14	
E : 0.28	Y : 0.14	: : 0.14	Z : 0.14	D : 0.14	@ : 0.14	
E : 0.28	D : 0.28	F : 0.14	: : 0.14	@ : 0.14	
E : 0.28	D : 0.28	F : 0.14	: : 0.14	@ : 0.14	
F : 0.28	I : 0.14	{ : 0.14	D : 0.14	C : 0.14	H : 0.14	
I : 0.28	F : 0.28	D : 0.14	C : 0.14	H : 0.14	
I : 0.28	F : 0.28	} : 0.14	C : 0.14	H : 0.14	
I : 0.28	F : 0.28	H : 0.28	G : 0.14	
I : 0.28	H : 0.28	} : 0.14	F : 0.14	G : 0.14	
I : 0.28	F : 0.28	H : 0.28	G : 0.14	
I : 0.28	H : 0.28	F : 0.14	{ : 0.14	G : 0.14	
I : 0.28	H : 0.28	F : 0.14	C : 0.14	G : 0.14	
I : 0.28	F : 0.14	C : 0.14	G : 0.14	H : 0.14	Y : 0.14	
: : 0.14	F : 0.14	I : 0.14	C : 0.14	G : 0.14	H : 0.14	Y : 0.14	
: : 0.28	{ : 0.28	F : 0.14	H : 0.14	C : 0.14	
: : 0.28	C : 0.28	} : 0.14	B : 0.14	Y : 0.14	
C : 0.42	: : 0.28	B : 0.14	Y : 0.14	
: : 0.42	C : 0.28	L : 0.14	B : 0.14	
: : 0.57	C : 0.14	L : 0.14	B : 0.14	
: : 0.57	f : 0.14	L : 0.14	} : 0.14	
: : 0.42	f : 0.14	C : 0.14	b : 0.14	F : 0.14	

#score	80.31479948961429
#seq	7
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF304YLR_TBRG4_CDS_m3_run1.txt

#BEAR
:::::::::::::::::::::::::::	chrM:8437-8640(+)$1	203	0	27	12.1511
:::::::::::::::::::::::::::	chrM:7793-8044(+)$1	251	24	51	12.1511
:::::::::::::::::::::::::::	chrM:7757-7978(+)$1	221	177	204	12.1511
::::::::::::::::::::::::::d	chrM:8584-8794(+)$1	210	36	63	10.9805
:::::::::::::::::::::::::::	chrM:4846-5085(+)$1	239	209	236	12.1511
:::::::::::::::::::::::::::	chrM:7248-7452(+)$1	204	148	175	12.1511
:::::::::::::::::::::::::::	chrM:10869-11084(+)$1	215	0	27	12.1511
::::::::::::::::::::::::::d	chrM:8544-8784(+)$1	240	76	103	10.9805
:::::::::::::::::::::::::::	chrM:10782-10990(+)$1	208	134	161	12.1511
:::::::::::::::::::::::::::	chrM:5324-5599(+)$1	275	35	62	12.1511
:::::::::::::::::::::::::::	chrM:15708-15927(+)$1	219	100	127	12.1511
:::::::::::::::::::::::::::	chrM:15404-15625(+)$1	221	118	145	12.1511
:::::::::::::::::::::::::::	chrM:12567-12821(+)$1	254	120	147	12.1511
:::::::::::::::::::::::::::	chrM:7211-7448(+)$1	237	185	212	12.1511
:::::::::::::::::::::::::::	chrM:10146-10373(+)$1	227	179	206	12.1511
:::::::::::::::::::::::::::	chrM:15458-15708(+)$1	250	0	27	12.1511
:::::::::::::::::::::::::::	chrM:7778-7983(+)$1	205	156	183	12.1511
:::::::::::::::::::::::::::	chrM:13305-13575(+)$1	270	74	101	12.1511
:::::::::::::::::::::::::::	chrM:13608-13840(+)$1	232	153	180	12.1511
:::::::::::::::::::::::::::	chrM:4584-4823(+)$1	239	138	165	12.1511
:::::::::::::::::::::::::::	chrM:10187-10394(+)$1	207	0	27	12.1511
:::::::::::::::::::::::::::	chrM:8440-8658(+)$1	218	0	27	12.1511
:::::::::::::::::::::::::::	chrM:10710-10950(+)$1	240	68	95	12.1511
:::::::::::::::::::::::::::	chrM:7789-7993(+)$1	204	28	55	12.1511
:::::::::::::::::::::::::::	chrM:8510-8744(+)$1	234	110	137	12.1511
:::::::::::::::::::::::::::	chrM:15392-15603(+)$1	211	0	27	12.1511
:::::::::::::::::::::::CCC{	chrM:10180-10387(+)$1	207	0	27	11.0786
:::::::::::::::::::::::::::	chrM:8405-8637(+)$1	232	0	27	12.1511
:::::::::::::::::::::::::::	chrM:13437-13679(+)$1	242	212	239	12.1511
:::::::::::::::::::::::::::	chrM:7783-7989(+)$1	206	147	174	12.1511
E::::::::::::::::::::::::::	chrM:7744-7957(+)$1	213	185	212	11.7015
:::::::::::::::::::::::::::	chrM:10827-11055(+)$1	228	89	116	12.1511
:::::::::::::::::::::::::::	chrM:12510-12733(+)$1	223	65	92	12.1511
:::::::::::::::::::::::::::	chrM:10756-10982(+)$1	226	113	140	12.1511
d::::::::::::::::::::::::::	chrM:10791-10995(+)$1	204	28	55	10.9937
:::::::::::::::::::::::::::	chrM:12533-12742(+)$1	209	42	69	12.1511
:::::::::::::::::::::::::::	chrM:13171-13415(+)$1	244	208	235	12.1511
:::::::::::::::::::::::::::	chrM:8614-8840(+)$1	226	0	27	12.1511
CCC::::::::::::::::::::::::	chrM:12622-12862(+)$1	240	78	105	11.2935
d::::::::::::::::::::::::::	chrM:10795-11002(+)$1	207	24	51	10.9937
:::::::::::::::::::::::::::	chrM:15613-15863(+)$1	250	21	48	12.1511
:::::::::::::::::::::::::::	chrM:9506-9728(+)$1	222	141	168	12.1511
:::::::::::::::::::::::::::	chrM:9484-9706(+)$1	222	108	135	12.1511
:::::::::::::::::::::::::::	chrM:8594-8814(+)$1	220	0	27	12.1511
:::::::::::::::::::::::::::	chrM:9802-10028(+)$1	226	59	86	12.1511
:::::::::::::::::::::::::::	chrM:11668-11876(+)$1	208	133	160	12.1511
:::::::::::::::::::::::::::	chrM:9828-10035(+)$1	207	33	60	12.1511
:::::::::::::::::::::::::::	chrM:10209-10429(+)$1	220	50	77	12.1511
:::::::::::::::::::::::::::	chrM:11032-11262(+)$1	230	0	27	12.1511
:::::::::::::::::::::::::::	chrM:13947-14170(+)$1	223	95	122	12.1511
:::::::::::::::::::::::::::	chrM:13589-13808(+)$1	219	141	168	12.1511
:::::::::::::::::::::::::::	chrM:12501-12710(+)$1	209	74	101	12.1511
:::::::::::::::::::::::::::	chrM:10131-10346(+)$1	215	105	132	12.1511
:::::::::::::::::::::::::::	chrM:15590-15813(+)$1	223	61	88	12.1511
:::::::::::::::::::::::::EE	chrM:10194-10408(+)$1	214	0	27	11.2189
:::::::::::::::::::::::::::	chrM:13804-14076(+)$1	272	40	67	12.1511
:::::::::::::::::::::::::::	chrM:10803-11027(+)$1	224	113	140	12.1511
:::::::::::::::::::::::::::	chrM:13375-13593(+)$1	218	0	27	12.1511
:::::::::::::::::::::::::::	chrM:9528-9752(+)$1	224	119	146	12.1511
:::::::::::::::::::::::::::	chrM:10750-10956(+)$1	206	72	99	12.1511

#otherMatches

#Seq PSSM
CCAACUAAAAAUAUUAAACACAAACUA	chrM:8437-8640(+)$1	203	0	27	12.1511
CUCCCAUCCCUACGCAUCCUUUACAUA	chrM:7793-8044(+)$1	251	24	51	12.1511
AUCUUCAACUCCUACAUACUUCCCCCA	chrM:7757-7978(+)$1	221	177	204	12.1511
CCCACCUCCAAAUAUCUCAUCAACAAC	chrM:8584-8794(+)$1	210	36	63	10.9805
UACAACCCUAACAUAACCAUUCUUAAU	chrM:4846-5085(+)$1	239	209	236	12.1511
GCCCCCCACCCUACCACACAUUCGAAG	chrM:7248-7452(+)$1	204	148	175	12.1511
UCCCCCUACUAUUUUUUAACCAAAUCA	chrM:10869-11084(+)$1	215	0	27	12.1511
CCCACCUCCAAAUAUCUCAUCAACAAC	chrM:8544-8784(+)$1	240	76	103	10.9805
UCCCCAACCUUUUCCUCCGACCCCCUA	chrM:10782-10990(+)$1	208	134	161	12.1511
UCUACUCCACCUCAAUCACACUACUCC	chrM:5324-5599(+)$1	275	35	62	12.1511
AUCCGUACUAUACUUCACAACAAUCCU	chrM:15708-15927(+)$1	219	100	127	12.1511
CCAACCCCUUAAACACCCCUCCCCACA	chrM:15404-15625(+)$1	221	118	145	12.1511
CUUCAAAUAUCUACUCAUUUUCCUAAU	chrM:12567-12821(+)$1	254	120	147	12.1511
GCCCCCCACCCUACCACACAUUCGAAG	chrM:7211-7448(+)$1	237	185	212	12.1511
GUCAUCCCUCUUAUUAAUCAUCAUCCU	chrM:10146-10373(+)$1	227	179	206	12.1511
UCCUUAAUGACAUUAACACUAUUCUCA	chrM:15458-15708(+)$1	250	0	27	12.1511
AUCUUCAACUCCUACAUACUUCCCCCA	chrM:7778-7983(+)$1	205	156	183	12.1511
ACAACCUUAACAAUGAACAAGAUAUUC	chrM:13305-13575(+)$1	270	74	101	12.1511
AUCCCCCUUCCAAACAACAAUCCCCCU	chrM:13608-13840(+)$1	232	153	180	12.1511
ACCAUAACCAAUACUACCAAUCAAUAC	chrM:4584-4823(+)$1	239	138	165	12.1511
UAUAUCCCCCGCCCGCGUCCCUUUCUC	chrM:10187-10394(+)$1	207	0	27	12.1511
ACUAAAAAUAUUAAACACAAACUACCA	chrM:8440-8658(+)$1	218	0	27	12.1511
CCAACAAUUAUAUUACUACCACUGACA	chrM:10710-10950(+)$1	240	68	95	12.1511
CUCCCAUCCCUACGCAUCCUUUACAUA	chrM:7789-7993(+)$1	204	28	55	12.1511
CCCACCUCCAAAUAUCUCAUCAACAAC	chrM:8510-8744(+)$1	234	110	137	12.1511
GAUAAAAUCACCUUCCACCCUUACUAC	chrM:15392-15603(+)$1	211	0	27	12.1511
UCGACCCUAUAUCCCCCGCCCGCGUCC	chrM:10180-10387(+)$1	207	0	27	11.0786
ACCCCCAUACUCCUUACACUAUUCCUC	chrM:8405-8637(+)$1	232	0	27	12.1511
CCACCCUUACUAACAUUAACGAAAAUA	chrM:13437-13679(+)$1	242	212	239	12.1511
ACUAAUCUUCAACUCCUACAUACUUCC	chrM:7783-7989(+)$1	206	147	174	12.1511
GACUAAUCUUCAACUCCUACAUACUUC	chrM:7744-7957(+)$1	213	185	212	11.7015
UCCCCAACCUUUUCCUCCGACCCCCUA	chrM:10827-11055(+)$1	228	89	116	12.1511
UCAAACUAGACUACUUCUCCAUAAUAU	chrM:12510-12733(+)$1	223	65	92	12.1511
UCCCCCUACUAUUUUUUAACCAAAUCA	chrM:10756-10982(+)$1	226	113	140	12.1511
GCACAUAAUUUGAAUCAACACAACCAC	chrM:10791-10995(+)$1	204	28	55	10.9937
UCAAACUAGACUACUUCUCCAUAAUAU	chrM:12533-12742(+)$1	209	42	69	12.1511
ACAACCUUAACAAUGAACAAGAUAUUC	chrM:13171-13415(+)$1	244	208	235	12.1511
UUGAUCCCCACCUCCAAAUAUCUCAUC	chrM:8614-8840(+)$1	226	0	27	12.1511
CUCAUUUUCCUAAUUACCAUACUAAUC	chrM:12622-12862(+)$1	240	78	105	11.2935
GCACAUAAUUUGAAUCAACACAACCAC	chrM:10795-11002(+)$1	207	24	51	10.9937
AUCCAUCCUCAUCCUAGCAAUAAUCCC	chrM:15613-15863(+)$1	250	21	48	12.1511
UCACCAUAGUCUAAUAGAAAACAACCG	chrM:9506-9728(+)$1	222	141	168	12.1511
UCCCACUCCUAAACACAUCCGUAUUAC	chrM:9484-9706(+)$1	222	108	135	12.1511
UCAUUCUAUUUCCCCCUCUAUUGAUCC	chrM:8594-8814(+)$1	220	0	27	12.1511
UUCAUCCGCCAACUAAUAUUUCACUUU	chrM:9802-10028(+)$1	226	59	86	12.1511
CUUCAAACUCUACUCCCACUAAUAGCU	chrM:11668-11876(+)$1	208	133	160	12.1511
UUCAUCCGCCAACUAAUAUUUCACUUU	chrM:9828-10035(+)$1	207	33	60	12.1511
AGAAAUUGCCCUCCUUUUACCCCUACC	chrM:10209-10429(+)$1	220	50	77	12.1511
AAAAAAACUCUACCUCUCUAUACUAAU	chrM:11032-11262(+)$1	230	0	27	12.1511
ACCAAAUCUCCACCUCCAUCAUCACCU	chrM:13947-14170(+)$1	223	95	122	12.1511
GAUUUCUCAUUACUAACAACAUUUCCC	chrM:13589-13808(+)$1	219	141	168	12.1511
UCAAACUAGACUACUUCUCCAUAAUAU	chrM:12501-12710(+)$1	209	74	101	12.1511
AUUACCUUCUUAUUAUUUGAUCUAGAA	chrM:10131-10346(+)$1	215	105	132	12.1511
CAAUAAUCCCCAUCCUCCAUAUAUCCA	chrM:15590-15813(+)$1	223	61	88	12.1511
CCCGCCCGCGUCCCUUUCUCCAUAAAA	chrM:10194-10408(+)$1	214	0	27	11.2189
ACCUCAACUACCUAACCAACAAACUUA	chrM:13804-14076(+)$1	272	40	67	12.1511
UCCCCAACCUUUUCCUCCGACCCCCUA	chrM:10803-11027(+)$1	224	113	140	12.1511
AUCCACAACCUUAACAAUGAACAAGAU	chrM:13375-13593(+)$1	218	0	27	12.1511
UCACCAUAGUCUAAUAGAAAACAACCG	chrM:9528-9752(+)$1	224	119	146	12.1511
CAUAAUUUGAAUCAACACAACCACCCA	chrM:10750-10956(+)$1	206	72	99	12.1511

#DB
...........................	chrM:8437-8640(+)$1	1	0	27	12.1511
...........................	chrM:7793-8044(+)$1	1	24	51	12.1511
...........................	chrM:7757-7978(+)$1	1	177	204	12.1511
..........................(	chrM:8584-8794(+)$1	1	36	63	10.9805
...........................	chrM:4846-5085(+)$1	1	209	236	12.1511
...........................	chrM:7248-7452(+)$1	1	148	175	12.1511
...........................	chrM:10869-11084(+)$1	1	0	27	12.1511
..........................(	chrM:8544-8784(+)$1	1	76	103	10.9805
...........................	chrM:10782-10990(+)$1	1	134	161	12.1511
...........................	chrM:5324-5599(+)$1	1	35	62	12.1511
...........................	chrM:15708-15927(+)$1	1	100	127	12.1511
...........................	chrM:15404-15625(+)$1	1	118	145	12.1511
...........................	chrM:12567-12821(+)$1	1	120	147	12.1511
...........................	chrM:7211-7448(+)$1	1	185	212	12.1511
...........................	chrM:10146-10373(+)$1	1	179	206	12.1511
...........................	chrM:15458-15708(+)$1	1	0	27	12.1511
...........................	chrM:7778-7983(+)$1	1	156	183	12.1511
...........................	chrM:13305-13575(+)$1	1	74	101	12.1511
...........................	chrM:13608-13840(+)$1	1	153	180	12.1511
...........................	chrM:4584-4823(+)$1	1	138	165	12.1511
...........................	chrM:10187-10394(+)$1	1	0	27	12.1511
...........................	chrM:8440-8658(+)$1	1	0	27	12.1511
...........................	chrM:10710-10950(+)$1	1	68	95	12.1511
...........................	chrM:7789-7993(+)$1	1	28	55	12.1511
...........................	chrM:8510-8744(+)$1	1	110	137	12.1511
...........................	chrM:15392-15603(+)$1	1	0	27	12.1511
.......................(((.	chrM:10180-10387(+)$1	1	0	27	11.0786
...........................	chrM:8405-8637(+)$1	1	0	27	12.1511
...........................	chrM:13437-13679(+)$1	1	212	239	12.1511
...........................	chrM:7783-7989(+)$1	1	147	174	12.1511
)..........................	chrM:7744-7957(+)$1	1	185	212	11.7015
...........................	chrM:10827-11055(+)$1	1	89	116	12.1511
...........................	chrM:12510-12733(+)$1	1	65	92	12.1511
...........................	chrM:10756-10982(+)$1	1	113	140	12.1511
)..........................	chrM:10791-10995(+)$1	1	28	55	10.9937
...........................	chrM:12533-12742(+)$1	1	42	69	12.1511
...........................	chrM:13171-13415(+)$1	1	208	235	12.1511
...........................	chrM:8614-8840(+)$1	1	0	27	12.1511
(((........................	chrM:12622-12862(+)$1	1	78	105	11.2935
)..........................	chrM:10795-11002(+)$1	1	24	51	10.9937
...........................	chrM:15613-15863(+)$1	1	21	48	12.1511
...........................	chrM:9506-9728(+)$1	1	141	168	12.1511
...........................	chrM:9484-9706(+)$1	1	108	135	12.1511
...........................	chrM:8594-8814(+)$1	1	0	27	12.1511
...........................	chrM:9802-10028(+)$1	1	59	86	12.1511
...........................	chrM:11668-11876(+)$1	1	133	160	12.1511
...........................	chrM:9828-10035(+)$1	1	33	60	12.1511
...........................	chrM:10209-10429(+)$1	1	50	77	12.1511
...........................	chrM:11032-11262(+)$1	1	0	27	12.1511
...........................	chrM:13947-14170(+)$1	1	95	122	12.1511
...........................	chrM:13589-13808(+)$1	1	141	168	12.1511
...........................	chrM:12501-12710(+)$1	1	74	101	12.1511
...........................	chrM:10131-10346(+)$1	1	105	132	12.1511
...........................	chrM:15590-15813(+)$1	1	61	88	12.1511
.........................((	chrM:10194-10408(+)$1	1	0	27	11.2189
...........................	chrM:13804-14076(+)$1	1	40	67	12.1511
...........................	chrM:10803-11027(+)$1	1	113	140	12.1511
...........................	chrM:13375-13593(+)$1	1	0	27	12.1511
...........................	chrM:9528-9752(+)$1	1	119	146	12.1511
...........................	chrM:10750-10956(+)$1	1	72	99	12.1511

#PSSM
: : 0.93	d : 0.03	E : 0.01	C : 0.01	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 0.96	C : 0.01	E : 0.01	
: : 0.93	d : 0.03	{ : 0.01	E : 0.01	

#score	721.1013322921136
#seq	60
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_UTR_m3_run1.txt

#BEAR
iiiiqqqqqqqqiiiii	chr10:126370528-126370895(-)$1	367	249	266	14.2783
ggggqqqqqqqqggggg	chr5:10264923-10265191(+)$1	268	24	41	14.3285
Fcccqqqqqqqqcccdd	chr2:198256675-198256990(-)$1	315	151	168	13.7368
ggggqqqqqqqqggggg	chr8:23429535-23429765(+)$1	230	88	105	14.3285
:cccqqqqqqqqccchh	chr1:28527310-28527575(-)$1	265	200	217	13.2238
ggggqqqqqqqqggggg	chr2:170668290-170668556(+)$1	266	236	253	14.3285
:cccqqqqqqqqccca!	chr17:48829721-48829963(+)$1	242	100	117	13.1934
!!bbqqqqqqqqbb]hh	chr6:30593819-30594163(+)$1	344	168	185	12.9401
dcccqqqqqqqqccc]d	chr18:43669510-43669798(-)$1	288	135	152	14.2797
[cccqqqqqqqqcccbb	chrX:151121678-151121911(-)$1	233	15	32	14.0621
c[bbqqqqqqqqbb]cc	chr15:64364864-64365173(-)$1	309	270	287	12.8565
iiiiqqqqqqqqiiiii	chr5:10433799-10434095(+)$1	296	198	215	14.2783
bcccqqqqqqqqccc]b	chr3:49052847-49053172(+)$1	325	169	186	13.9883
hhhhqqqqqqqqhhhhh	chr16:2820925-2821163(+)$1	238	23	40	13.1260
eeeeqqqqqqqqeeeee	chr19:10941966-10942240(+)$1	274	16	33	13.6228
[cccqqqqqqqqccccc	chr11:102932785-102933035(-)$1	250	112	129	14.6049
iiiiqqqqqqqqiiiii	chr11:61067150-61067447(-)$1	297	180	197	14.2783
ff[aqqqqqqqqa]fff	chr17:76220053-76220312(+)$1	259	11	28	13.4678
ffffqqqqqqqqfffff	chr12:98995320-98995556(+)$1	236	73	90	13.4422
eeeeqqqqqqqqeeeee	chr2:26413946-26414185(-)$1	239	137	154	13.6228
ffffqqqqqqqqfffff	chr11:75111674-75111894(+)$1	220	2	19	13.4422
!cccqqqqqqqqccc]d	chr2:15770943-15771270(+)$1	327	256	273	14.6146
'cccqqqqqqqqccccc	chr17:62495810-62496103(-)$1	293	114	131	13.7924
"cccqqqqqqqqccc]f	chr15:90815167-90815431(+)$1	264	167	184	14.6097
[cccqqqqqqqqcccff	chr10:73576391-73576613(-)$1	222	11	28	14.5865
ffffqqqqqqqqfffff	chr10:120900580-120900842(-)$1	262	54	71	13.4422
#cccqqqqqqqqcccii	chr13:52988588-52988901(-)$1	313	42	59	14.6080
ffffqqqqqqqqfffff	chr7:12373004-12373266(-)$1	262	110	127	13.4422
gg[aqqqqqqqqa]ggg	chr22:45736594-45736837(+)$1	243	22	39	13.9822
ggggqqqqqqqqggggg	chr19:8553786-8554013(+)$1	227	140	157	14.3285
"cccqqqqqqqqccc22	chr4:39459940-39460162(-)$1	222	113	130	14.0487
iiiiqqqqqqqqiiiii	chr14:35786389-35786701(+)$1	312	288	305	14.2783
[cccqqqqqqqqccc]c	chr11:32610055-32610302(+)$1	247	51	68	14.7737
ffffqqqqqqqqfffff	chr11:764799-765068(+)$1	269	157	174	13.4422
ffffqqqqqqqqfffff	chr10:127541793-127542066(+)$1	273	207	224	13.4422
hhhhqqqqqqqqhhhhh	chr3:123632706-123632976(-)$1	270	214	231	13.1260
ddddqqqqqqqqdddd]	chr13:29252090-29252402(+)$1	312	243	260	12.8235
ecccqqqqqqqqccc]e	chr9:37436767-37437057(+)$1	290	33	50	14.5743
ggggqqqqqqqqggggg	chrX:64754349-64754699(-)$1	350	283	300	14.3285
eeeeqqqqqqqqeeeee	chr12:122692313-122692565(-)$1	252	161	178	13.6228
!!bbqqqqqqqqbb444	chr7:127732425-127732710(+)$1	285	169	186	12.8106
g[bbqqqqqqqqbb333	chr6:44221393-44221604(+)$1	211	180	197	13.0051
[cccqqqqqqqqccc]d	chr18:211443-211740(+)$1	297	87	104	14.6458
!cccqqqqqqqqccc33	chr17:1248078-1248418(-)$1	340	310	327	14.6059
ddddqqqqqqqqddddc	chr1:155882869-155883120(-)$1	251	137	154	12.8379
eeeeqqqqqqqqeeeee	chr9:33281178-33281488(+)$1	310	197	214	13.6228
!cccqqqqqqqqcccgg	chr10:103546064-103546332(-)$1	268	166	183	14.7583
ggggqqqqqqqqggggg	chr19:8553813-8554033(+)$1	220	113	130	14.3285
[cccqqqqqqqqccc]b	chr17:4800895-4801156(+)$1	261	139	156	14.5164
eeeeqqqqqqqqeeeee	chr17:40265251-40265523(-)$1	272	219	236	13.6228
iiiiqqqqqqqqiiiii	chr16:89663181-89663455(+)$1	274	145	162	14.2783
ddddqqqqqqqqdddde	chr17:34956757-34957012(+)$1	255	149	166	12.8549
eeeeqqqqqqqqeeeee	chr1:23409808-23410079(+)$1	271	232	249	13.6228
""bbqqqqqqqqbb]bb	chr2:10580663-10580955(-)$1	292	51	68	12.2898
[cccqqqqqqqqccc]c	chr8:100890361-100890594(-)$1	233	196	213	14.7737
iiiiqqqqqqqqiiiii	chr1:207217229-207217497(-)$1	268	157	174	14.2783
eeeeqqqqqqqqeeeee	chrX:154005736-154005999(+)$1	263	169	186	13.6228
[cccqqqqqqqqcccdd	chr19:10243996-10244384(-)$1	388	27	44	14.3728
ff[aqqqqqqqqa]fff	chr5:95131211-95131454(+)$1	243	134	151	13.4678
eeeeqqqqqqqqeeeee	chr17:16285115-16285319(+)$1	204	99	116	13.6228
"cccqqqqqqqqccc33	chr12:76441288-76441535(-)$1	247	94	111	14.4913
ffffqqqqqqqqfffff	chr22:42303014-42303317(+)$1	303	52	69	13.4422
eeeeqqqqqqqqeeeee	chr19:13264931-13265212(+)$1	281	128	145	13.6228
ddddqqqqqqqqdddd]	chr15:91503041-91503292(+)$1	251	175	192	12.8235
eeeeqqqqqqqqeeeee	chr10:71962662-71962993(-)$1	331	287	304	13.6228
[cccqqqqqqqqcccgg	chr3:186505532-186505770(+)$1	238	200	217	14.7894
ggggqqqqqqqqggggg	chr22:24967867-24968158(+)$1	291	269	286	14.3285
ggggqqqqqqqqggggg	chr2:170668356-170668586(+)$1	230	170	187	14.3285
hhhhqqqqqqqqhhhhh	chr15:64791495-64791773(+)$1	278	110	127	13.1260
eeeeqqqqqqqqeeeee	chrX:77381483-77381726(+)$1	243	38	55	13.6228
eeeeqqqqqqqqeeeee	chr12:54678430-54678688(+)$1	258	151	168	13.6228
hcccqqqqqqqqccc:a	chr6:18225640-18225910(-)$1	270	90	107	13.1972
eeeeqqqqqqqqeeeee	chr11:64084130-64084394(-)$1	264	164	181	13.6228

#otherMatches

#Seq PSSM
UGCUACAGCGGGGGCAG	chr10:126370528-126370895(-)$1	367	249	266	14.2783
AUGUCUCGUGAUGCAUC	chr5:10264923-10265191(+)$1	268	24	41	14.3285
AGUGACCAAGAACACAG	chr2:198256675-198256990(-)$1	315	151	168	13.7368
AGAAUGUAGCUUUUCUG	chr8:23429535-23429765(+)$1	230	88	105	14.3285
UCAGAGACAAGCCUGGA	chr1:28527310-28527575(-)$1	265	200	217	13.2238
UAGUACAAACUAACUAA	chr2:170668290-170668556(+)$1	266	236	253	14.3285
UUACUUAAACAUGUGGC	chr17:48829721-48829963(+)$1	242	100	117	13.1934
AAUCCAGGAAAUGAAUG	chr6:30593819-30594163(+)$1	344	168	185	12.9401
UCUGAAAGCCCCCGGUA	chr18:43669510-43669798(-)$1	288	135	152	14.2797
CUCAGUUCACCAUGAUU	chrX:151121678-151121911(-)$1	233	15	32	14.0621
UAGUUAUUAUGUGCAAG	chr15:64364864-64365173(-)$1	309	270	287	12.8565
GUAUAUGUGUAAAUACA	chr5:10433799-10434095(+)$1	296	198	215	14.2783
GGCCUUAAAUGUGGCUC	chr3:49052847-49053172(+)$1	325	169	186	13.9883
GGGUCCUUGUCUGCUCU	chr16:2820925-2821163(+)$1	238	23	40	13.1260
GGGGGACCAGAACCCUU	chr19:10941966-10942240(+)$1	274	16	33	13.6228
AUGGGCAUUGAGCCACA	chr11:102932785-102933035(-)$1	250	112	129	14.6049
uguguguguguguaugu	chr11:61067150-61067447(-)$1	297	180	197	14.2783
GUUGAAUCUGAGCUGCA	chr17:76220053-76220312(+)$1	259	11	28	13.4678
GGAAAUUGUCUAUUCCU	chr12:98995320-98995556(+)$1	236	73	90	13.4422
GGUGUCUAGAUUUAUCA	chr2:26413946-26414185(-)$1	239	137	154	13.6228
CUCAGGCGAAAGUGAGC	chr11:75111674-75111894(+)$1	220	2	19	13.4422
CAAUGAAAAUAAAUUUG	chr2:15770943-15771270(+)$1	327	256	273	14.6146
GUGUGUUAUCUGACAAG	chr17:62495810-62496103(-)$1	293	114	131	13.7924
AGUUUGCCUUCUGACCU	chr15:90815167-90815431(+)$1	264	167	184	14.6097
AGGGUUCUCUGUCCCUG	chr10:73576391-73576613(-)$1	222	11	28	14.5865
AAGAAACAGAAAUCUUU	chr10:120900580-120900842(-)$1	262	54	71	13.4422
AACUGAGUUGGAAGUGA	chr13:52988588-52988901(-)$1	313	42	59	14.6080
AUAUUUCCCAAUGUGUG	chr7:12373004-12373266(-)$1	262	110	127	13.4422
UCGUAAUAAAAGGGGAA	chr22:45736594-45736837(+)$1	243	22	39	13.9822
AAUUUUUUUUGUAGUUG	chr19:8553786-8554013(+)$1	227	140	157	14.3285
UUCUCAGCAAUCAGACU	chr4:39459940-39460162(-)$1	222	113	130	14.0487
UAAUUGCAUCCUGUUGU	chr14:35786389-35786701(+)$1	312	288	305	14.2783
UCACUGUUGAUUGUGUU	chr11:32610055-32610302(+)$1	247	51	68	14.7737
UAGAUUUCUGAUUUUAU	chr11:764799-765068(+)$1	269	157	174	13.4422
aguaauaaagaauauuu	chr10:127541793-127542066(+)$1	273	207	224	13.4422
UAGGUUGGUCUCUCUGC	chr3:123632706-123632976(-)$1	270	214	231	13.1260
UGAGAAUUUCUGCUCAA	chr13:29252090-29252402(+)$1	312	243	260	12.8235
CCGGGAAGCAAACCGUG	chr9:37436767-37437057(+)$1	290	33	50	14.5743
UGACGACCAUAAGUUGC	chrX:64754349-64754699(-)$1	350	283	300	14.3285
GUGAAAAACCUAUUACU	chr12:122692313-122692565(-)$1	252	161	178	13.6228
UUCUGUAUUUAAAGCUU	chr7:127732425-127732710(+)$1	285	169	186	12.8106
UUCUGAAAUUAAAGUAU	chr6:44221393-44221604(+)$1	211	180	197	13.0051
CUUGCAUUAUUUUAAAA	chr18:211443-211740(+)$1	297	87	104	14.6458
AAGCAGGUUAGCGUUGA	chr17:1248078-1248418(-)$1	340	310	327	14.6059
GAACCAGGAAUAGUUUG	chr1:155882869-155883120(-)$1	251	137	154	12.8379
UACUGUAUCAUGAGUGG	chr9:33281178-33281488(+)$1	310	197	214	13.6228
CACCUUGUGAAUGGUAG	chr10:103546064-103546332(-)$1	268	166	183	14.7583
AAUUUUUUUUGUAGUUG	chr19:8553813-8554033(+)$1	220	113	130	14.3285
AGCCACUCCAGGGGCAG	chr17:4800895-4801156(+)$1	261	139	156	14.5164
CUCAUUUUAGCUUGAGU	chr17:40265251-40265523(-)$1	272	219	236	13.6228
CCCCGAUGAGAAGGGGC	chr16:89663181-89663455(+)$1	274	145	162	14.2783
UGUCUUCCCUUUGACAU	chr17:34956757-34957012(+)$1	255	149	166	12.8549
AACUUGUCCAUUAGUUU	chr1:23409808-23410079(+)$1	271	232	249	13.6228
GAGUGGGAUGAAACGCC	chr2:10580663-10580955(-)$1	292	51	68	12.2898
AUAAAUAAACAAUUAAC	chr8:100890361-100890594(-)$1	233	196	213	14.7737
GAUGUCUAACUUCAUUU	chr1:207217229-207217497(-)$1	268	157	174	14.2783
AAAUUGUAAAAUAUUUU	chrX:154005736-154005999(+)$1	263	169	186	13.6228
GCUGCUAAGGACUAGUU	chr19:10243996-10244384(-)$1	388	27	44	14.3728
CACCAACAUCCAGAUGU	chr5:95131211-95131454(+)$1	243	134	151	13.4678
GGUCAAAAUGCAGAUCU	chr17:16285115-16285319(+)$1	204	99	116	13.6228
UCAAGUUAUUUGUUGUU	chr12:76441288-76441535(-)$1	247	94	111	14.4913
GGGUGUGCUUGGACCCC	chr22:42303014-42303317(+)$1	303	52	69	13.4422
UCAUUUUGUACUGUGGG	chr19:13264931-13265212(+)$1	281	128	145	13.6228
UCGCAAGGGAAGGUGAG	chr15:91503041-91503292(+)$1	251	175	192	12.8235
GCUUAAAUAUCAAAGCA	chr10:71962662-71962993(-)$1	331	287	304	13.6228
UAUGAAAGGUAACAUCA	chr3:186505532-186505770(+)$1	238	200	217	14.7894
UUUGUGUUCAUUUGAAG	chr22:24967867-24968158(+)$1	291	269	286	14.3285
UAGUACAAACUAACUAA	chr2:170668356-170668586(+)$1	230	170	187	14.3285
CGUUGACUCUAAGAUGU	chr15:64791495-64791773(+)$1	278	110	127	13.1260
UCAAGAUCCCAUUUGAA	chrX:77381483-77381726(+)$1	243	38	55	13.6228
UAGAUUUUUUUUUUUGC	chr12:54678430-54678688(+)$1	258	151	168	13.6228
CCUUUUUAUCUUGAGUG	chr6:18225640-18225910(-)$1	270	90	107	13.1972
ACACCAAACACAGUGUU	chr11:64084130-64084394(-)$1	264	164	181	13.6228

#DB
((((........)))))	chr10:126370528-126370895(-)$1	1	249	266	14.2783
((((........)))))	chr5:10264923-10265191(+)$1	1	24	41	14.3285
((((........)))((	chr2:198256675-198256990(-)$1	1	151	168	13.7368
((((........)))))	chr8:23429535-23429765(+)$1	1	88	105	14.3285
.(((........)))((	chr1:28527310-28527575(-)$1	1	200	217	13.2238
((((........)))))	chr2:170668290-170668556(+)$1	1	236	253	14.3285
.(((........)))(.	chr17:48829721-48829963(+)$1	1	100	117	13.1934
..((........)).))	chr6:30593819-30594163(+)$1	1	168	185	12.9401
((((........))).)	chr18:43669510-43669798(-)$1	1	135	152	14.2797
.(((........)))))	chrX:151121678-151121911(-)$1	1	15	32	14.0621
(.((........)).))	chr15:64364864-64365173(-)$1	1	270	287	12.8565
((((........)))))	chr5:10433799-10434095(+)$1	1	198	215	14.2783
((((........))).)	chr3:49052847-49053172(+)$1	1	169	186	13.9883
((((........)))))	chr16:2820925-2821163(+)$1	1	23	40	13.1260
((((........)))))	chr19:10941966-10942240(+)$1	1	16	33	13.6228
.(((........)))))	chr11:102932785-102933035(-)$1	1	112	129	14.6049
((((........)))))	chr11:61067150-61067447(-)$1	1	180	197	14.2783
((.(........).)))	chr17:76220053-76220312(+)$1	1	11	28	13.4678
((((........)))))	chr12:98995320-98995556(+)$1	1	73	90	13.4422
((((........)))))	chr2:26413946-26414185(-)$1	1	137	154	13.6228
((((........)))))	chr11:75111674-75111894(+)$1	1	2	19	13.4422
.(((........))).)	chr2:15770943-15771270(+)$1	1	256	273	14.6146
.(((........)))))	chr17:62495810-62496103(-)$1	1	114	131	13.7924
.(((........))).)	chr15:90815167-90815431(+)$1	1	167	184	14.6097
.(((........)))))	chr10:73576391-73576613(-)$1	1	11	28	14.5865
((((........)))))	chr10:120900580-120900842(-)$1	1	54	71	13.4422
.(((........)))))	chr13:52988588-52988901(-)$1	1	42	59	14.6080
((((........)))))	chr7:12373004-12373266(-)$1	1	110	127	13.4422
((.(........).)))	chr22:45736594-45736837(+)$1	1	22	39	13.9822
((((........)))))	chr19:8553786-8554013(+)$1	1	140	157	14.3285
.(((........)))..	chr4:39459940-39460162(-)$1	1	113	130	14.0487
((((........)))))	chr14:35786389-35786701(+)$1	1	288	305	14.2783
.(((........))).)	chr11:32610055-32610302(+)$1	1	51	68	14.7737
((((........)))))	chr11:764799-765068(+)$1	1	157	174	13.4422
((((........)))))	chr10:127541793-127542066(+)$1	1	207	224	13.4422
((((........)))))	chr3:123632706-123632976(-)$1	1	214	231	13.1260
((((........)))).	chr13:29252090-29252402(+)$1	1	243	260	12.8235
((((........))).)	chr9:37436767-37437057(+)$1	1	33	50	14.5743
((((........)))))	chrX:64754349-64754699(-)$1	1	283	300	14.3285
((((........)))))	chr12:122692313-122692565(-)$1	1	161	178	13.6228
..((........))...	chr7:127732425-127732710(+)$1	1	169	186	12.8106
(.((........))...	chr6:44221393-44221604(+)$1	1	180	197	13.0051
.(((........))).)	chr18:211443-211740(+)$1	1	87	104	14.6458
.(((........)))..	chr17:1248078-1248418(-)$1	1	310	327	14.6059
((((........))))(	chr1:155882869-155883120(-)$1	1	137	154	12.8379
((((........)))))	chr9:33281178-33281488(+)$1	1	197	214	13.6228
.(((........)))))	chr10:103546064-103546332(-)$1	1	166	183	14.7583
((((........)))))	chr19:8553813-8554033(+)$1	1	113	130	14.3285
.(((........))).)	chr17:4800895-4801156(+)$1	1	139	156	14.5164
((((........)))))	chr17:40265251-40265523(-)$1	1	219	236	13.6228
((((........)))))	chr16:89663181-89663455(+)$1	1	145	162	14.2783
((((........)))))	chr17:34956757-34957012(+)$1	1	149	166	12.8549
((((........)))))	chr1:23409808-23410079(+)$1	1	232	249	13.6228
..((........)).))	chr2:10580663-10580955(-)$1	1	51	68	12.2898
.(((........))).)	chr8:100890361-100890594(-)$1	1	196	213	14.7737
((((........)))))	chr1:207217229-207217497(-)$1	1	157	174	14.2783
((((........)))))	chrX:154005736-154005999(+)$1	1	169	186	13.6228
.(((........)))))	chr19:10243996-10244384(-)$1	1	27	44	14.3728
((.(........).)))	chr5:95131211-95131454(+)$1	1	134	151	13.4678
((((........)))))	chr17:16285115-16285319(+)$1	1	99	116	13.6228
.(((........)))..	chr12:76441288-76441535(-)$1	1	94	111	14.4913
((((........)))))	chr22:42303014-42303317(+)$1	1	52	69	13.4422
((((........)))))	chr19:13264931-13265212(+)$1	1	128	145	13.6228
((((........)))).	chr15:91503041-91503292(+)$1	1	175	192	12.8235
((((........)))))	chr10:71962662-71962993(-)$1	1	287	304	13.6228
.(((........)))))	chr3:186505532-186505770(+)$1	1	200	217	14.7894
((((........)))))	chr22:24967867-24968158(+)$1	1	269	286	14.3285
((((........)))))	chr2:170668356-170668586(+)$1	1	170	187	14.3285
((((........)))))	chr15:64791495-64791773(+)$1	1	110	127	13.1260
((((........)))))	chrX:77381483-77381726(+)$1	1	38	55	13.6228
((((........)))))	chr12:54678430-54678688(+)$1	1	151	168	13.6228
)(((........))).(	chr6:18225640-18225910(-)$1	1	90	107	13.1972
((((........)))))	chr11:64084130-64084394(-)$1	1	164	181	13.6228

#PSSM
e : 0.19	g : 0.13	[ : 0.12	f : 0.12	i : 0.08	! : 0.06	d : 0.06	h : 0.05	" : 0.05	: : 0.02	F : 0.01	c : 0.01	b : 0.01	' : 0.01	# : 0.01	
c : 0.32	e : 0.17	g : 0.12	f : 0.12	i : 0.08	d : 0.05	h : 0.04	! : 0.02	[ : 0.02	" : 0.01	
c : 0.32	e : 0.17	g : 0.10	f : 0.09	i : 0.08	b : 0.06	d : 0.05	h : 0.04	[ : 0.04	
c : 0.32	e : 0.17	g : 0.10	f : 0.09	i : 0.08	b : 0.06	d : 0.05	h : 0.04	a : 0.04	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.32	e : 0.17	g : 0.10	f : 0.09	i : 0.08	b : 0.06	d : 0.05	h : 0.04	a : 0.04	
c : 0.32	e : 0.17	g : 0.10	f : 0.09	i : 0.08	b : 0.06	d : 0.05	h : 0.04	] : 0.04	
c : 0.32	e : 0.17	g : 0.12	f : 0.12	i : 0.08	d : 0.05	] : 0.04	h : 0.04	4 : 0.01	3 : 0.01	
e : 0.17	g : 0.15	f : 0.13	] : 0.12	i : 0.09	d : 0.08	h : 0.06	c : 0.04	3 : 0.04	b : 0.02	a : 0.01	2 : 0.01	4 : 0.01	: : 0.01	
e : 0.20	g : 0.15	f : 0.15	i : 0.09	c : 0.08	d : 0.06	h : 0.06	b : 0.05	3 : 0.04	] : 0.02	! : 0.01	2 : 0.01	4 : 0.01	a : 0.01	

#score	1009.8784915695643
#seq	73
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_UTR_m3_run1.txt

#BEAR
bb[cccqqqqqqqqccc]bbFF	chr11:2159596-2159804(-)$1	208	117	139	13.3181
!!ddddqqqqqqqqdddd]ggg	chr15:44088192-44088460(+)$1	268	132	154	15.1110
d[ddddqqqqqqqqdddd]ddd	chr19:56671815-56672103(+)$1	288	99	121	14.8786
[eeeeeqqqqqqqqeeeeehhh	chr1:36789550-36789885(+)$1	335	163	185	14.7278
ddd[bbqqqqqqqqbbdddd]c	chr5:176899086-176899338(-)$1	252	58	80	13.9564
ddddddqqqqqqqqdddd]ddd	chr10:697069-697326(-)$1	257	82	104	14.6523
ggggggqqqqqqqqggggggg2	chr3:47892262-47892550(-)$1	288	231	253	14.5677
!eeeeeqqqqqqqqeeeee22d	chr11:118780904-118781169(-)$1	265	13	35	14.8943
eee[bbqqqqqqqqbb]eeeee	chr19:18892792-18893021(+)$1	229	129	151	14.5530
Beeeeeqqqqqqqqeeeee::e	chr19:41196678-41196934(-)$1	256	139	161	12.6503
ddddbbqqqqqqqqbb]dddd3	chr12:132402739-132403011(+)$1	272	169	191	13.8903
ffff[aqqqqqqqqa]ffffff	chr16:2588104-2588457(+)$1	353	168	190	14.4209
c[ddddqqqqqqqqdddd]ccc	chr9:35690595-35690880(-)$1	285	124	146	15.1329
c[ddddqqqqqqqqdddd]ccc	chr19:5891525-5891795(-)$1	270	102	124	15.1329
h!!cccqqqqqqqqccchhhhh	chr19:47248857-47249126(-)$1	269	59	81	13.9493
:ccc[aqqqqqqqqa]ccc:ee	chr8:142402059-142402278(+)$1	219	1	23	13.1057
gggcccqqqqqqqqccc]gggg	chr9:123630799-123631080(-)$1	281	168	190	15.1608
ee[cccqqqqqqqqccceeeee	chr14:100042642-100042907(-)$1	265	87	109	15.4064
eeee[aqqqqqqqqa]eeeeeb	chr17:188667-188925(-)$1	258	190	212	15.4243
d[ddddqqqqqqqqdddddddd	chr17:41623460-41623718(+)$1	258	209	231	14.6706
b[ddddqqqqqqqqddddbb66	chr21:45345173-45345409(+)$1	236	84	106	13.4004
ddd[bbqqqqqqqqbb333ddd	chr17:38083308-38083557(-)$1	249	67	89	13.7745
a[ddddqqqqqqqqdddd]a]b	chr1:2326627-2326874(+)$1	247	30	52	14.8975
ffff[aqqqqqqqqa]ffffff	chr20:8112774-8113027(+)$1	253	4	26	14.4209
:eeeeeqqqqqqqqeeeeeddd	chr16:75297392-75297642(-)$1	250	141	163	14.3082
cc[cccqqqqqqqqccc]ccc:	chr16:87733885-87734148(-)$1	263	164	186	14.1869
======qqqqqqqq========	chr18:46066236-46066493(+)$1	257	98	120	14.8890
e[bb[aqqqqqqqqa]bb]eee	chr20:57467238-57467490(+)$1	252	215	237	13.8713
+eeeeeqqqqqqqqeeeeefff	chr4:2811398-2811609(+)$1	211	161	183	14.5567
[eeeeeqqqqqqqqeeeee]bb	chr2:240322201-240322476(-)$1	275	174	196	14.7882
cc[cccqqqqqqqqccc]cccd	chr19:1104352-1104614(+)$1	262	34	56	15.0053
ggggggqqqqqqqqggggggg]	chr20:62330567-62330803(-)$1	236	12	34	14.7094
ff!!bbqqqqqqqqbb22ffff	chr16:30958843-30959073(+)$1	230	126	148	13.3931
feeeeeqqqqqqqqeeeee333	chr17:38077498-38077740(-)$1	242	31	53	15.3826
eeecccqqqqqqqqccc]eeee	chr1:116916437-116916662(+)$1	225	77	99	15.4664
eeee[aqqqqqqqqa]eeeeef	chr2:20550340-20550568(-)$1	228	90	112	15.6018
"""cccqqqqqqqqccc]dddd	chr4:83345632-83345900(-)$1	268	133	155	14.6517
eee[bbqqqqqqqqbb]eeeee	chr9:139249969-139250268(+)$1	299	75	97	14.5530
ffffffqqqqqqqqffffffdd	chr17:75479384-75479631(+)$1	247	73	95	13.6703
eee!!aqqqqqqqqa22eeeee	chr10:3818552-3818829(-)$1	277	193	215	14.9735
eeeeeaqqqqqqqqa]eeeee]	chr9:139942507-139942740(-)$1	233	181	203	15.6380
ffffffqqqqqqqqffffff]a	chr17:17713439-17713711(+)$1	272	233	255	13.7996
ccddddqqqqqqqqdddd]ccc	chr17:75479548-75479788(+)$1	240	32	54	14.9373
eeecccqqqqqqqqccc4444e	chr11:62433150-62433414(+)$1	264	176	198	15.0929
dddd[aqqqqqqqqa]dddda2	chr3:195622026-195622275(-)$1	249	83	105	14.7372
feeeeeqqqqqqqqeeeee333	chr16:4660569-4660823(-)$1	254	85	107	15.3826
:eeeeeqqqqqqqqeeeee:cc	chr10:102759180-102759456(+)$1	276	80	102	13.5665
bb[cccqqqqqqqqccc]bb22	chr11:844387-844638(+)$1	251	31	53	13.8378
geeeeeqqqqqqqqeeeeefff	chr19:18554255-18554490(-)$1	235	67	89	15.1508
a[ddddqqqqqqqqdddd]a::	chr3:100428680-100428941(+)$1	261	232	254	13.3097
ggggggqqqqqqqqggggggg3	chr1:113249517-113249805(-)$1	288	140	162	14.7711
fffcccqqqqqqqqccc]ffff	chr17:1394074-1394373(-)$1	299	236	258	14.7340

#otherMatches

#Seq PSSM
UCUGGCCCGCCCCAGCCCGAAG	chr11:2159596-2159804(-)$1	208	117	139	13.3181
UUGGGGAUAUGGAGCUCUUUAU	chr15:44088192-44088460(+)$1	268	132	154	15.1110
cccuuuuccUGCCUGAAGAGCA	chr19:56671815-56672103(+)$1	288	99	121	14.8786
GAGGGGACUGUCCACCCCUCCU	chr1:36789550-36789885(+)$1	335	163	185	14.7278
CUCACCCGCACACUGGGAGGGC	chr5:176899086-176899338(-)$1	252	58	80	13.9564
GGCUCUGCUUGUAAGGAGUCCA	chr10:697069-697326(-)$1	257	82	104	14.6523
ACUCCGCAGCUGUUUGGGGUGG	chr3:47892262-47892550(-)$1	288	231	253	14.5677
CGGGGCGGGGCGUGGCCCCAAC	chr11:118780904-118781169(-)$1	265	13	35	14.8943
CUGUGCUCCUCUGUGCCCAGGC	chr19:18892792-18893021(+)$1	229	129	151	14.5530
ACCGGGGGAAAGGACUCGGCGA	chr19:41196678-41196934(-)$1	256	139	161	12.6503
GCAUUGGGAUAUAACAGGUGUA	chr12:132402739-132403011(+)$1	272	169	191	13.8903
ccggggauggcgggcgccggcc	chr16:2588104-2588457(+)$1	353	168	190	14.4209
cguccgggugggagcgggggcg	chr9:35690595-35690880(-)$1	285	124	146	15.1329
GUGGGCGAUCAGGGGCCUCCUG	chr19:5891525-5891795(-)$1	270	102	124	15.1329
CCUGAGAGAGGCGACUCGAGCC	chr19:47248857-47249126(-)$1	269	59	81	13.9493
CCCCACGUGACCCAGCGGGUCC	chr8:142402059-142402278(+)$1	219	1	23	13.1057
CGCGUGGCAUCUAGCACUGUGG	chr9:123630799-123631080(-)$1	281	168	190	15.1608
GUGCUGGGAGGUGACAGACAGG	chr14:100042642-100042907(-)$1	265	87	109	15.4064
GCAGGGGUGUGGGACGCUGCCC	chr17:188667-188925(-)$1	258	190	212	15.4243
CACCGACUUGUUUUUCGGGCGC	chr17:41623460-41623718(+)$1	258	209	231	14.6706
CCAGGGCCCCACACUUCUGCCA	chr21:45345173-45345409(+)$1	236	84	106	13.4004
GCUUCGGGGAUAAACGUUUGGC	chr17:38083308-38083557(-)$1	249	67	89	13.7745
ugccagauaagaaacugggacg	chr1:2326627-2326874(+)$1	247	30	52	14.8975
CAGCGUGCAAAGUUGGGCUGGG	chr20:8112774-8113027(+)$1	253	4	26	14.4209
ACCCCCUGAGUGUUGGGGGAGG	chr16:75297392-75297642(-)$1	250	141	163	14.3082
GCAUCAUGAUGUCCUGAAGCUU	chr16:87733885-87734148(-)$1	263	164	186	14.1869
GCGUGUGUGAGUGUGCGCGCCC	chr18:46066236-46066493(+)$1	257	98	120	14.8890
CGCCGUGGUGGCGGAGGGGGCC	chr20:57467238-57467490(+)$1	252	215	237	13.8713
AGUGCCCUGUGUCUGGCAUGGU	chr4:2811398-2811609(+)$1	211	161	183	14.5567
CGCGGCAGGUGGACGCCGCCGG	chr2:240322201-240322476(-)$1	275	174	196	14.7882
GGUCGGGGAAGGGGCCGUCCAG	chr19:1104352-1104614(+)$1	262	34	56	15.0053
UGCUCAGGGGCUGGUGGGCAGG	chr20:62330567-62330803(-)$1	236	12	34	14.7094
GGGAACAAAGACCAGUUACUUG	chr16:30958843-30959073(+)$1	230	126	148	13.3931
UGUGGCGUUGUGAGGCCACCCC	chr17:38077498-38077740(-)$1	242	31	53	15.3826
GCCGGCAUCCCUGAGCCUGGCU	chr1:116916437-116916662(+)$1	225	77	99	15.4664
GUGGAGAAAGAAGACAUUGCCG	chr2:20550340-20550568(-)$1	228	90	112	15.6018
UCAGGUACUACAUAGCUCUGUA	chr4:83345632-83345900(-)$1	268	133	155	14.6517
GUCUCAGAAGUGUGUGUGGCCU	chr9:139249969-139250268(+)$1	299	75	97	14.5530
GCUGCCUGGAAGCUGGCAGCCU	chr17:75479384-75479631(+)$1	247	73	95	13.6703
GAGAACAACUCACCGACCUCAG	chr10:3818552-3818829(-)$1	277	193	215	14.9735
AGACGUGAAAGGAGAGUGUCUG	chr9:139942507-139942740(-)$1	233	181	203	15.6380
ACGUGGCACACAUUCCACGUGG	chr17:17713439-17713711(+)$1	272	233	255	13.7996
UCCCGGGAAGAUGGCUGGAGAG	chr17:75479548-75479788(+)$1	240	32	54	14.9373
UGGUCGAACUUACCCGAAUCUC	chr11:62433150-62433414(+)$1	264	176	198	15.0929
AGCCGCUGGGAUUUGGGGCUCC	chr3:195622026-195622275(-)$1	249	83	105	14.7372
UCCUUAGACAGCAGUGAGGGUU	chr16:4660569-4660823(-)$1	254	85	107	15.3826
UGCUGGAACAAUGACCAGCUGC	chr10:102759180-102759456(+)$1	276	80	102	13.5665
UCCCAGCAGAGCCCCUGAGAUC	chr11:844387-844638(+)$1	251	31	53	13.8378
CCACGCAAGUGUGGGUGUGUGA	chr19:18554255-18554490(-)$1	235	67	89	15.1508
UGAGAGGAGAGGGGCUUUGGGA	chr3:100428680-100428941(+)$1	261	232	254	13.3097
CUUGGGAACUCGUCCCCAGGAG	chr1:113249517-113249805(-)$1	288	140	162	14.7711
CCUCCUGGGGGGAGGGGUGGGG	chr17:1394074-1394373(-)$1	299	236	258	14.7340

#DB
((.(((........))).))))	chr11:2159596-2159804(-)$1	1	117	139	13.3181
..((((........)))).)))	chr15:44088192-44088460(+)$1	1	132	154	15.1110
(.((((........)))).)))	chr19:56671815-56672103(+)$1	1	99	121	14.8786
.(((((........))))))))	chr1:36789550-36789885(+)$1	1	163	185	14.7278
(((.((........)))))).)	chr5:176899086-176899338(-)$1	1	58	80	13.9564
((((((........)))).)))	chr10:697069-697326(-)$1	1	82	104	14.6523
((((((........))))))).	chr3:47892262-47892550(-)$1	1	231	253	14.5677
.(((((........)))))..)	chr11:118780904-118781169(-)$1	1	13	35	14.8943
(((.((........)).)))))	chr19:18892792-18893021(+)$1	1	129	151	14.5530
((((((........)))))..(	chr19:41196678-41196934(-)$1	1	139	161	12.6503
((((((........)).)))).	chr12:132402739-132403011(+)$1	1	169	191	13.8903
((((.(........).))))))	chr16:2588104-2588457(+)$1	1	168	190	14.4209
(.((((........)))).)))	chr9:35690595-35690880(-)$1	1	124	146	15.1329
(.((((........)))).)))	chr19:5891525-5891795(-)$1	1	102	124	15.1329
(..(((........))))))))	chr19:47248857-47249126(-)$1	1	59	81	13.9493
.(((.(........).))).((	chr8:142402059-142402278(+)$1	1	1	23	13.1057
((((((........))).))))	chr9:123630799-123631080(-)$1	1	168	190	15.1608
((.(((........))))))))	chr14:100042642-100042907(-)$1	1	87	109	15.4064
((((.(........).))))))	chr17:188667-188925(-)$1	1	190	212	15.4243
(.((((........))))))))	chr17:41623460-41623718(+)$1	1	209	231	14.6706
(.((((........))))))..	chr21:45345173-45345409(+)$1	1	84	106	13.4004
(((.((........))...)))	chr17:38083308-38083557(-)$1	1	67	89	13.7745
(.((((........)))).).)	chr1:2326627-2326874(+)$1	1	30	52	14.8975
((((.(........).))))))	chr20:8112774-8113027(+)$1	1	4	26	14.4209
.(((((........)))))(((	chr16:75297392-75297642(-)$1	1	141	163	14.3082
((.(((........))).))).	chr16:87733885-87734148(-)$1	1	164	186	14.1869
((((((........))))))))	chr18:46066236-46066493(+)$1	1	98	120	14.8890
(.((.(........).)).)))	chr20:57467238-57467490(+)$1	1	215	237	13.8713
.(((((........))))))))	chr4:2811398-2811609(+)$1	1	161	183	14.5567
.(((((........))))).))	chr2:240322201-240322476(-)$1	1	174	196	14.7882
((.(((........))).))))	chr19:1104352-1104614(+)$1	1	34	56	15.0053
((((((........))))))).	chr20:62330567-62330803(-)$1	1	12	34	14.7094
((..((........))..))))	chr16:30958843-30959073(+)$1	1	126	148	13.3931
((((((........)))))...	chr17:38077498-38077740(-)$1	1	31	53	15.3826
((((((........))).))))	chr1:116916437-116916662(+)$1	1	77	99	15.4664
((((.(........).))))))	chr2:20550340-20550568(-)$1	1	90	112	15.6018
...(((........))).))))	chr4:83345632-83345900(-)$1	1	133	155	14.6517
(((.((........)).)))))	chr9:139249969-139250268(+)$1	1	75	97	14.5530
((((((........))))))((	chr17:75479384-75479631(+)$1	1	73	95	13.6703
(((..(........)..)))))	chr10:3818552-3818829(-)$1	1	193	215	14.9735
((((((........).))))).	chr9:139942507-139942740(-)$1	1	181	203	15.6380
((((((........)))))).)	chr17:17713439-17713711(+)$1	1	233	255	13.7996
((((((........)))).)))	chr17:75479548-75479788(+)$1	1	32	54	14.9373
((((((........)))....)	chr11:62433150-62433414(+)$1	1	176	198	15.0929
((((.(........).))))).	chr3:195622026-195622275(-)$1	1	83	105	14.7372
((((((........)))))...	chr16:4660569-4660823(-)$1	1	85	107	15.3826
.(((((........))))).((	chr10:102759180-102759456(+)$1	1	80	102	13.5665
((.(((........))).))..	chr11:844387-844638(+)$1	1	31	53	13.8378
)(((((........)))))(((	chr19:18554255-18554490(-)$1	1	67	89	15.1508
(.((((........)))).)..	chr3:100428680-100428941(+)$1	1	232	254	13.3097
((((((........))))))).	chr1:113249517-113249805(-)$1	1	140	162	14.7711
((((((........))).))))	chr17:1394074-1394373(-)$1	1	236	258	14.7340

#PSSM
e : 0.19	f : 0.15	d : 0.13	g : 0.09	c : 0.09	b : 0.05	: : 0.05	! : 0.03	[ : 0.03	a : 0.03	B : 0.01	h : 0.01	= : 0.01	+ : 0.01	" : 0.01	
e : 0.36	[ : 0.15	f : 0.11	d : 0.09	g : 0.07	c : 0.07	b : 0.03	! : 0.03	= : 0.01	" : 0.01	
e : 0.34	d : 0.26	[ : 0.09	f : 0.09	g : 0.07	! : 0.03	c : 0.01	= : 0.01	b : 0.01	" : 0.01	
e : 0.24	c : 0.23	d : 0.23	[ : 0.07	f : 0.07	g : 0.05	! : 0.03	= : 0.01	b : 0.01	
c : 0.21	e : 0.21	d : 0.19	[ : 0.13	b : 0.11	g : 0.05	f : 0.03	= : 0.01	! : 0.01	
c : 0.21	d : 0.19	e : 0.19	a : 0.17	b : 0.11	g : 0.05	f : 0.03	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.21	d : 0.19	e : 0.19	a : 0.17	b : 0.11	g : 0.05	f : 0.03	= : 0.01	
c : 0.21	d : 0.19	e : 0.19	] : 0.15	b : 0.11	g : 0.05	f : 0.03	= : 0.01	2 : 0.01	
e : 0.24	c : 0.23	d : 0.23	f : 0.07	g : 0.05	] : 0.05	2 : 0.03	3 : 0.01	= : 0.01	b : 0.01	
e : 0.32	d : 0.24	] : 0.15	f : 0.07	g : 0.05	h : 0.01	c : 0.01	3 : 0.01	= : 0.01	b : 0.01	2 : 0.01	4 : 0.01	
e : 0.34	] : 0.17	f : 0.11	d : 0.09	g : 0.07	b : 0.05	c : 0.05	h : 0.01	3 : 0.01	= : 0.01	4 : 0.01	
d : 0.17	e : 0.17	f : 0.15	g : 0.09	c : 0.09	b : 0.05	: : 0.05	h : 0.03	a : 0.03	3 : 0.03	2 : 0.01	= : 0.01	] : 0.01	4 : 0.01	
e : 0.19	d : 0.15	f : 0.11	c : 0.11	g : 0.09	] : 0.05	h : 0.03	2 : 0.03	: : 0.03	3 : 0.03	F : 0.01	6 : 0.01	= : 0.01	b : 0.01	4 : 0.01	a : 0.01	
d : 0.17	e : 0.17	f : 0.13	c : 0.09	3 : 0.07	2 : 0.05	b : 0.05	g : 0.03	h : 0.03	: : 0.03	] : 0.03	F : 0.01	6 : 0.01	= : 0.01	a : 0.01	

#score	755.0643641562466
#seq	52
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF934PXE_SAFB_CDS_m1_run2.txt

#BEAR
iiiiixxxxxxxxxxxxxxxiiiiiiii	chr8:124266895-124267183(-)$1	288	105	133	20.2470
=======uuuuuuuuuuuu=========	chr2:152321203-152321518(+)$1	315	24	52	21.6518
eddddwwwwwwwwwwwwwwdddd]eeee	chr3:160150795-160151038(+)$1	243	94	122	21.5176
fffffftttttttttttffffff66666	chr2:152319594-152319919(+)$1	325	167	195	17.2382
dbb[bbvvvvvvvvvvvvvbb]bb22dd	chr2:152319888-152320131(+)$1	243	67	95	20.4229
eeeee^^^^^^^^^^^^^^^^^^^^^^^	chr15:40916935-40917211(+)$1	276	105	133	20.7380
eeeeewwwwwwwwwwwwwweeeee:ccc	chr11:5443360-5443645(-)$1	285	13	41	22.0061
d[eeeeeuuuuuuuuuuuueeeee]ddd	chr2:55252674-55252929(-)$1	255	116	144	20.8691
!a[bbxxxxxxxxxxxxxxxbba22a22	chr12:46319944-46320217(-)$1	273	201	229	19.4616
!dddduuuuuuuuuuuudddd22a]ccc	chr1:155447776-155448047(-)$1	271	188	216	19.5519
ffff[bbuuuuuuuuuuuubbffffff:	chr2:55252969-55253247(-)$1	278	47	75	19.9564
fffffwwwwwwwwwwwwwwffffff22b	chr3:42679138-42679394(+)$1	256	8	36	22.2695
gggg^^^^^^^^^^^^^^^^^^^^^^^^	chr10:64973378-64973662(-)$1	284	44	72	20.6121
[a!!cccuuuuuuuuuuuuccc22a444	chr1:111490755-111491014(-)$1	259	167	195	21.8237
ffffffuuuuuuuuuuuuffffff::::	chr6:4032031-4032329(+)$1	298	237	265	17.8376
fffffyyyyyyyyyyyyyyyyffffff]	chr11:65350441-65350699(+)$1	258	86	114	21.4060
gggggwwwwwwwwwwwwwwggggggg22	chr3:25667994-25668255(-)$1	261	68	96	22.6123
iiiiiiiitttttttttttiiiiiiiii	chr3:160143809-160144057(+)$1	248	30	58	17.4283
fffffuuuuuuuuuuuuffffffeeeee	chr2:109380765-109381053(+)$1	288	50	78	19.8931
[dddd^^^^^^^^^^^^^^^^^^^^^^d	chr2:55253239-55253483(-)$1	244	203	231	20.2315
eeeeewwwwwwwwwwwwwweeeeeeeee	chr2:55252254-55252510(-)$1	256	218	246	22.3505
ggggguuuuuuuuuuuuggggggg333c	chr2:170493232-170493585(+)$1	353	187	215	21.0101
hhhhhhwwwwwwwwwwwwwwhhhhhhhh	chr3:42680266-42680503(+)$1	237	39	67	18.5114
cc^^^^^^^^^^^^^^^^^^^^^^^ccc	chr10:70333644-70333911(+)$1	267	174	202	19.3629
fffff^^^^^^^^^^^^^^^^^^^^^^^	chr2:55253460-55253726(-)$1	266	11	39	20.7675
dddd[bbuuuuuuuuuuuubb]ddddFF	chr12:46320921-46321191(-)$1	270	196	224	19.1909
eeeeevvvvvvvvvvvvveeeee22ccc	chr10:119043418-119043721(-)$1	303	259	287	21.8179
eeeee^^^^^^^^^^^^^^^^^^^^^^e	chr2:170493659-170493936(+)$1	277	124	152	20.6426
d[eeeeeuuuuuuuuuuuueeeee22dd	chr6:64422831-64423193(+)$1	362	218	246	20.9306
!ddddwwwwwwwwwwwwwwdddd]ffff	chr6:87965634-87965938(+)$1	304	74	102	21.4755
ffffffvvvvvvvvvvvvvffffffbbf	chr2:109379920-109380173(+)$1	253	197	225	21.4109
iiiiiivvvvvvvvvvvvviiiiiiiii	chr8:53569095-53569403(-)$1	308	244	272	21.9108
hhhhh^^^^^^^^^^^^^^^^^^^^^^h	chr17:27614505-27614764(-)$1	259	214	242	19.6254
fffff^^^^^^^^^^^^^^^^^^^^^^^	chr1:203768515-203768778(+)$1	263	72	100	20.7675

#otherMatches

#Seq PSSM
UUCCUACACACAUUUCCACAGGGAGUAA	chr8:124266895-124267183(-)$1	288	105	133	20.2470
UGUGAUUGCUGUGGGGAAAAAUCACAAC	chr2:152321203-152321518(+)$1	315	24	52	21.6518
UUAGUAUUUGCUCUUCACCACUACAAGC	chr3:160150795-160151038(+)$1	243	94	122	21.5176
UUUCAUCAACUGUUACAGUGAAAAAUAA	chr2:152319594-152319919(+)$1	325	167	195	17.2382
UCUGAGCCGGAGAAAAAUACUGAGGAAU	chr2:152319888-152320131(+)$1	243	67	95	20.4229
GACGUAACUAAGCAAGUCAUUCAAACUC	chr15:40916935-40917211(+)$1	276	105	133	20.7380
GCAUGGAGAGAAACAGAUACAUGCGCUG	chr11:5443360-5443645(-)$1	285	13	41	22.0061
GAUAACACAAAAGAUACCCUGUUACCUG	chr2:55252674-55252929(-)$1	255	116	144	20.8691
AGAUGUACAAAACUACUACUCACGACGA	chr12:46319944-46320217(-)$1	273	201	229	19.4616
AUGAACAUACAAACCUUUUCACAAGUGC	chr1:155447776-155448047(-)$1	271	188	216	19.5519
GAGCCUGAAAAUAUUAAUGCAGCUCUUC	chr2:55252969-55253247(-)$1	278	47	75	19.9564
AGUUUAGCAAAUAUUAAAGAGACUGGUA	chr3:42679138-42679394(+)$1	256	8	36	22.2695
GUCAAACUCCAUUACCUACCAUUAACAC	chr10:64973378-64973662(-)$1	284	44	72	20.6121
ACGAGUCACAGCAAAACCAGACAAGAAA	chr1:111490755-111491014(-)$1	259	167	195	21.8237
UUGUGGACAAUAAAAUUACUACAAAGAA	chr6:4032031-4032329(+)$1	298	237	265	17.8376
GAUCCAGGUGAAAGAGGUUGGGGGUUCA	chr11:65350441-65350699(+)$1	258	86	114	21.4060
UGCUAUAUAACUUUUCUCUUAGCAAUUU	chr3:25667994-25668255(-)$1	261	68	96	22.6123
AAAUGUUAAAACUUUUUUGUAGCGUUUA	chr3:160143809-160144057(+)$1	248	30	58	17.4283
AGUUGCCAAAACCAGAACAACUUGCUAU	chr2:109380765-109381053(+)$1	288	50	78	19.8931
AGCCUGAAAACCCCCCACCAUAUGAAGA	chr2:55253239-55253483(-)$1	244	203	231	20.2315
UCCUUCCGAUACAGAAAAAGAGGACAGA	chr2:55252254-55252510(-)$1	256	218	246	22.3505
UAACUAAAGGUAAACACAGUUAUAAUAG	chr2:170493232-170493585(+)$1	353	187	215	21.0101
AGGAAUCAAAAGAGAAAAAAGUUUCUGA	chr3:42680266-42680503(+)$1	237	39	67	18.5114
CCUAUACCACUUUGCUACCGACUUUGGA	chr10:70333644-70333911(+)$1	267	174	202	19.3629
AGAAGAAUACUAGCACCAAAACAUCAAA	chr2:55253460-55253726(-)$1	266	11	39	20.7675
CUCAAUCACCAUCUCCUAAGAAUGAGUC	chr12:46320921-46321191(-)$1	270	196	224	19.1909
GUCAAUAAAACAACAGGUUUGACAAGGC	chr10:119043418-119043721(-)$1	303	259	287	21.8179
UAGCUCAAAUAACAGCAGGGAAAAAAAG	chr2:170493659-170493936(+)$1	277	124	152	20.6426
CCACCUGUUGUUCAUCUCCCAGGUCAGC	chr6:64422831-64423193(+)$1	362	218	246	20.9306
AGAAUUUUUUCGGAAGCUUAUUUACUAU	chr6:87965634-87965938(+)$1	304	74	102	21.4755
UGGUGACUUCACGUUUUCCUCACCACAG	chr2:109379920-109380173(+)$1	253	197	225	21.4109
UGCUGGAAGAAAGCAGAGCCCAGCAGAA	chr8:53569095-53569403(-)$1	308	244	272	21.9108
CAUUCAGAAAAACAGUAUGGACAAAAAG	chr17:27614505-27614764(-)$1	259	214	242	19.6254
CCAUUGGAUUUCUACUUUUUAUAUGUUA	chr1:203768515-203768778(+)$1	263	72	100	20.7675

#DB
(((((...............))))))))	chr8:124266895-124267183(-)$1	1	105	133	20.2470
(((((((............)))))))))	chr2:152321203-152321518(+)$1	1	24	52	21.6518
(((((..............)))).))))	chr3:160150795-160151038(+)$1	1	94	122	21.5176
((((((...........)))))).....	chr2:152319594-152319919(+)$1	1	167	195	17.2382
(((.((.............)).))..))	chr2:152319888-152320131(+)$1	1	67	95	20.4229
(((((.......................	chr15:40916935-40917211(+)$1	1	105	133	20.7380
(((((..............))))).(((	chr11:5443360-5443645(-)$1	1	13	41	22.0061
(.(((((............))))).)))	chr2:55252674-55252929(-)$1	1	116	144	20.8691
.(.((...............)))..)..	chr12:46319944-46320217(-)$1	1	201	229	19.4616
.((((............))))..).)))	chr1:155447776-155448047(-)$1	1	188	216	19.5519
((((.((............)))))))).	chr2:55252969-55253247(-)$1	1	47	75	19.9564
(((((..............))))))..)	chr3:42679138-42679394(+)$1	1	8	36	22.2695
((((........................	chr10:64973378-64973662(-)$1	1	44	72	20.6121
.(..(((............)))..)...	chr1:111490755-111491014(-)$1	1	167	195	21.8237
((((((............))))))....	chr6:4032031-4032329(+)$1	1	237	265	17.8376
(((((................)))))).	chr11:65350441-65350699(+)$1	1	86	114	21.4060
(((((..............)))))))..	chr3:25667994-25668255(-)$1	1	68	96	22.6123
((((((((...........)))))))))	chr3:160143809-160144057(+)$1	1	30	58	17.4283
(((((............))))))(((((	chr2:109380765-109381053(+)$1	1	50	78	19.8931
.((((......................)	chr2:55253239-55253483(-)$1	1	203	231	20.2315
(((((..............)))))((((	chr2:55252254-55252510(-)$1	1	218	246	22.3505
(((((............)))))))...)	chr2:170493232-170493585(+)$1	1	187	215	21.0101
((((((..............))))))))	chr3:42680266-42680503(+)$1	1	39	67	18.5114
((.......................)))	chr10:70333644-70333911(+)$1	1	174	202	19.3629
(((((.......................	chr2:55253460-55253726(-)$1	1	11	39	20.7675
((((.((............)).))))))	chr12:46320921-46321191(-)$1	1	196	224	19.1909
(((((.............)))))..)))	chr10:119043418-119043721(-)$1	1	259	287	21.8179
(((((......................)	chr2:170493659-170493936(+)$1	1	124	152	20.6426
(.(((((............)))))..))	chr6:64422831-64423193(+)$1	1	218	246	20.9306
.((((..............)))).))))	chr6:87965634-87965938(+)$1	1	74	102	21.4755
((((((.............))))))))(	chr2:109379920-109380173(+)$1	1	197	225	21.4109
((((((.............)))))))))	chr8:53569095-53569403(-)$1	1	244	272	21.9108
(((((......................)	chr17:27614505-27614764(-)$1	1	214	242	19.6254
(((((.......................	chr1:203768515-203768778(+)$1	1	72	100	20.7675

#PSSM
f : 0.26	e : 0.17	d : 0.11	i : 0.08	! : 0.08	g : 0.08	[ : 0.05	h : 0.05	= : 0.02	c : 0.02	
f : 0.26	d : 0.14	e : 0.14	i : 0.08	g : 0.08	[ : 0.05	a : 0.05	h : 0.05	= : 0.02	b : 0.02	c : 0.02	
f : 0.26	e : 0.20	d : 0.14	i : 0.08	g : 0.08	h : 0.05	= : 0.02	b : 0.02	[ : 0.02	! : 0.02	^ : 0.02	
f : 0.26	e : 0.20	d : 0.14	i : 0.08	g : 0.08	h : 0.05	= : 0.02	[ : 0.02	b : 0.02	! : 0.02	^ : 0.02	
f : 0.23	e : 0.20	d : 0.11	i : 0.08	b : 0.05	[ : 0.05	^ : 0.05	g : 0.05	h : 0.05	= : 0.02	c : 0.02	
^ : 0.23	w : 0.17	f : 0.08	b : 0.08	u : 0.08	x : 0.05	e : 0.05	i : 0.05	= : 0.02	c : 0.02	y : 0.02	h : 0.02	v : 0.02	
^ : 0.23	w : 0.20	v : 0.11	u : 0.11	x : 0.05	e : 0.05	b : 0.05	= : 0.02	t : 0.02	c : 0.02	y : 0.02	i : 0.02	
u : 0.29	^ : 0.23	w : 0.20	v : 0.11	x : 0.05	t : 0.02	y : 0.02	i : 0.02	
u : 0.29	^ : 0.23	w : 0.20	v : 0.11	x : 0.05	t : 0.05	y : 0.02	
u : 0.29	^ : 0.23	w : 0.20	v : 0.11	x : 0.05	t : 0.05	y : 0.02	
u : 0.29	^ : 0.23	w : 0.20	v : 0.11	x : 0.05	t : 0.05	y : 0.02	
u : 0.29	^ : 0.23	w : 0.20	v : 0.11	x : 0.05	t : 0.05	y : 0.02	
u : 0.29	^ : 0.23	w : 0.20	v : 0.11	x : 0.05	t : 0.05	y : 0.02	
u : 0.29	^ : 0.23	w : 0.20	v : 0.11	x : 0.05	t : 0.05	y : 0.02	
u : 0.29	^ : 0.23	w : 0.20	v : 0.11	x : 0.05	t : 0.05	y : 0.02	
u : 0.29	^ : 0.23	w : 0.20	v : 0.11	x : 0.05	t : 0.05	y : 0.02	
u : 0.29	^ : 0.23	w : 0.20	v : 0.11	x : 0.05	t : 0.05	y : 0.02	
^ : 0.23	u : 0.20	w : 0.20	v : 0.11	x : 0.05	f : 0.05	d : 0.02	y : 0.02	t : 0.02	g : 0.02	
^ : 0.23	w : 0.20	u : 0.17	f : 0.08	v : 0.08	x : 0.05	d : 0.02	y : 0.02	t : 0.02	g : 0.02	e : 0.02	
^ : 0.23	f : 0.14	e : 0.14	d : 0.08	b : 0.08	x : 0.05	g : 0.05	i : 0.05	= : 0.02	c : 0.02	y : 0.02	w : 0.02	
^ : 0.23	f : 0.14	e : 0.14	b : 0.11	i : 0.08	d : 0.08	g : 0.05	= : 0.02	c : 0.02	y : 0.02	h : 0.02	
^ : 0.23	f : 0.20	e : 0.14	i : 0.08	d : 0.05	] : 0.05	g : 0.05	= : 0.02	b : 0.02	2 : 0.02	c : 0.02	h : 0.02	
^ : 0.23	f : 0.20	e : 0.14	i : 0.08	d : 0.08	2 : 0.05	g : 0.05	= : 0.02	b : 0.02	a : 0.02	h : 0.02	
^ : 0.23	e : 0.14	f : 0.14	i : 0.08	2 : 0.08	] : 0.05	g : 0.05	= : 0.02	6 : 0.02	b : 0.02	a : 0.02	h : 0.02	d : 0.02	
^ : 0.23	f : 0.14	2 : 0.11	i : 0.08	e : 0.08	: : 0.05	] : 0.05	= : 0.02	6 : 0.02	a : 0.02	g : 0.02	3 : 0.02	h : 0.02	d : 0.02	
^ : 0.20	c : 0.11	i : 0.08	e : 0.08	2 : 0.08	f : 0.08	d : 0.05	= : 0.02	6 : 0.02	a : 0.02	4 : 0.02	: : 0.02	g : 0.02	3 : 0.02	h : 0.02	b : 0.02	
^ : 0.20	c : 0.11	i : 0.08	e : 0.08	d : 0.08	2 : 0.08	f : 0.08	= : 0.02	6 : 0.02	4 : 0.02	: : 0.02	3 : 0.02	h : 0.02	F : 0.02	b : 0.02	
c : 0.14	e : 0.11	d : 0.11	^ : 0.11	i : 0.08	2 : 0.05	: : 0.05	h : 0.05	f : 0.05	= : 0.02	6 : 0.02	b : 0.02	4 : 0.02	] : 0.02	F : 0.02	

#score	697.5509037796237
#seq	34
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_CDS_m1_run2.txt

#BEAR
ffffff!!ccc!!eeeeeooooooeeeee22ccc]fffff	chr3:49755246-49755516(+)$1	270	118	158	12.4445
[ggggggg[bb!!fffffflllffffff22bb]ggggggg	chr17:79860162-79860406(-)$1	244	46	86	11.3467
!cccddddffffff!!cccooooooccc22ffffff7777	chr22:50873291-50873526(+)$1	235	156	196	11.5538
ggg$$$$$bb[dddd[cccooooooccc]dddd]bbgggg	chr19:538656-538923(+)$1	267	155	195	13.7447
ggggggg"""dddd[bbbbnnnnnbb]bb]ddddgggggg	chr8:145687775-145688071(-)$1	296	27	67	12.0465
d[ggggggg[a[gggggggnnnnnggggggg]aggggggg	chr3:98451615-98451834(+)$1	219	62	102	12.1214
cc]cccccc[ccc[bb!!ccclllccc333bb]ccc]ccc	chr5:138629655-138629972(+)$1	317	241	281	12.2805
iiiiiiii!!dddd!!cccooooooccc22dddd]iiiii	chr12:62996807-62997118(+)$1	311	122	162	17.8669
gggg!!bb$$$$$ffffffooooooffffff333bb22gg	chr11:637269-637528(+)$1	259	179	219	11.3415
cc[a[bb[bb[ccc!!bbbblllbb]bb22ccc]bb]bb3	chr19:1467299-1467542(-)$1	243	150	190	12.0183
=========[ccc!!bbmmmmbb22ccc22==========	chr17:74381116-74381378(+)$1	262	50	90	11.6703
f[a!!bb[a!!ccc[eeeeemmmmeeeee]ccc22a]bb2	chr21:47565643-47565898(-)$1	255	131	171	11.4420
eeeccc[bb!!ccc[cccqqqqqqqqccc]ccc22bbccc	chr20:32255459-32255706(-)$1	247	78	118	10.4785
[ccc[bb!!ggggggg[ddddllldddd22gggggggbb]	chr11:702875-703118(-)$1	243	116	156	12.5224
ddccc[ccc[ffffffcccooooooccc]ffffff]ccc]	chr2:232575101-232575353(+)$1	252	171	211	13.5511
hhhhhhgggggggdddd[cccmmmmccc22dddd]ggggg	chr2:231902423-231902682(+)$1	259	132	172	12.1944
eeee[accc[eeeee[cccnnnnnccc]eeeeeccc]a]e	chr1:27320446-27320740(+)$1	294	150	190	11.7550
bggggggg[eeeee[a[cccbbmmmmbb22ccc]a]eeee	chr3:13461595-13461878(-)$1	283	37	77	11.3824
iiiiiiccceeeee!!ammmma22eeeee22ccc]iiiii	chr16:725992-726263(+)$1	271	143	183	10.5968
ddddccc!!eeeee[dddd!!annnnna22dddd22eeee	chr7:127670459-127670707(+)$1	248	143	183	10.4070
dddd[a!!bb[ccc[ddddoooooodddd22ccc]bb22a	chr1:36788412-36788683(+)$1	271	1	41	13.5517
e:eeeee[dddd[bb[cccoooooocccbb]dddd]eeee	chr17:79860483-79860800(-)$1	317	79	119	10.6544
gggggggeeeee!!a[bboooooobb]a22eeeee]gggg	chr8:103424361-103424610(-)$1	249	122	162	13.9724
ee:eeeee!!ccc!!bbrrrrrrrrrbb22ccc22eeeee	chr8:30669833-30670093(-)$1	260	208	248	10.8256
fffffccc!!dddd[dddd[aooooooa]dddd]dddd22	chr10:75551929-75552212(+)$1	283	20	60	11.4896
h[iiiiiiiiidddd[cccoooooocccdddd]iiiiiii	chr16:2029100-2029389(+)$1	289	23	63	15.0767
iiiiii[bb!!hhhhhhhhoooooohhhhhhhh333bb]i	chr19:1468580-1468829(-)$1	249	67	107	12.7448
========bb[ccc[ccc[bbmmmmbb]cccccc333bb3	chr1:27320165-27320415(+)$1	250	158	198	11.8466

#otherMatches

#Seq PSSM
UGGGGGAGCCCUGGGCAGUCUAGGUUGUCAUGGGACCCUC	chr3:49755246-49755516(+)$1	270	118	158	12.4445
gccggccccgcccgggggUUCCGCCCCUCUGUAGGGCUGG	chr17:79860162-79860406(-)$1	244	46	86	11.3467
ACGCGGUGGUGCAGAACCUGGAGCGGGGCCCUGUGCAGAC	chr22:50873291-50873526(+)$1	235	156	196	11.5538
UCCUGGGAAGUGGCCUGCAAGCACCUGCUGGCCUCUGGAG	chr19:538656-538923(+)$1	267	155	195	13.7447
ggccgcuauguccggcgccgaggaggccggcgggggcggc	chr8:145687775-145688071(-)$1	296	27	67	12.0465
UUUCUGCCGGCCUCGGGCUUCUGCGGCCCGAUGUGGCAGG	chr3:98451615-98451834(+)$1	219	62	102	12.1214
UCGCUCGAGGCCUGAGGGACAGACUGUACACUGGGGGCUU	chr5:138629655-138629972(+)$1	317	241	281	12.2805
GUGGGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCCCC	chr12:62996807-62997118(+)$1	311	122	162	17.8669
CUCGCGGGGAACUCGCUCGUGUGCGUGAGCGUGGCCACCG	chr11:637269-637528(+)$1	259	179	219	11.3415
UGGCACCAGCGCGGAGGCCACCUUGCGCAGCCGGGCAGGC	chr19:1467299-1467542(-)$1	243	150	190	12.0183
CCAGAACUUCGUGCCCAGCAAUGUCCGCUCAAGUUCUGGG	chr17:74381116-74381378(+)$1	262	50	90	11.6703
gggggcggcucgguggcggcggccgcugcggccaugguga	chr21:47565643-47565898(-)$1	255	131	171	11.4420
CCACGCUGAAACUGGCCGGAUGGUGGCGGGCGGGGUCGCG	chr20:32255459-32255706(-)$1	247	78	118	10.4785
GUGAGGGCCAGGCUGGCGGCCAGCGGCCUCUCAGCCUCUG	chr11:702875-703118(-)$1	243	116	156	12.5224
CAGGCCCGGACGCCGGACCUCUGUUGGUAUUGGUGGCCGU	chr2:232575101-232575353(+)$1	252	171	211	13.5511
gggggcggcggcggcggcggcgCGCGCCAUCCGCUCGCCG	chr2:231902423-231902682(+)$1	259	132	172	12.1944
GGCGGCGGCUGCUGGAGGUGGAGGGCCGCCGGCGCCUGGU	chr1:27320446-27320740(+)$1	294	150	190	11.7550
ccccgcccccgcgcUCAUCACCUGCUGGCCUggcgcgcgc	chr3:13461595-13461878(-)$1	283	37	77	11.3824
AGCUGGAGGACUGGGACCCAGGCACCAGUGCCCUGCCAGC	chr16:725992-726263(+)$1	271	143	183	10.5968
GAAUCCACACUUGCGCCGUGAGGUAGACGAACGGGAGCAG	chr7:127670459-127670707(+)$1	248	143	183	10.4070
GGCGAGGCCUGUAACCCCUACUCGAAGGGCAUUAGGGAAC	chr1:36788412-36788683(+)$1	271	1	41	13.5517
GAGACCUGGGGCGCCAUCCCGCGCCGGAGGGGCCUGGGGU	chr17:79860483-79860800(-)$1	317	79	119	10.6544
GAGUGGAGGACGAGAAGGAAAGCACCAUGACGUCCAUCCA	chr8:103424361-103424610(-)$1	249	122	162	13.9724
ACGAGUGUAAGCAGCUGAACGAGAACCAAGUGCGGACGCU	chr8:30669833-30670093(-)$1	260	208	248	10.8256
CUUGGGUGAGGGGGUCCCCUCAUCACAGCGGGGUCCCCGC	chr10:75551929-75552212(+)$1	283	20	60	11.4896
GCUCCAGGGCCCUGCGUGUGACGGUGCAGCAGCGGCUCUG	chr16:2029100-2029389(+)$1	289	23	63	15.0767
GGGGGCGCCACCUUCCGCGGUGUGGCGCGGGGGCCGGGGG	chr19:1468580-1468829(-)$1	249	67	107	12.7448
GGACGGCAGAGCAGAGGUCGccgccgccgcccugggaucc	chr1:27320165-27320415(+)$1	250	158	198	11.8466

#DB
((((((..(((..(((((......)))))..))).)))))	chr3:49755246-49755516(+)$1	1	118	158	12.4445
.(((((((.((..((((((...))))))..)).)))))))	chr17:79860162-79860406(-)$1	1	46	86	11.3467
.(((((((((((((..(((......)))..))))))....	chr22:50873291-50873526(+)$1	1	156	196	11.5538
(((.....((.((((.(((......))).)))).))))))	chr19:538656-538923(+)$1	1	155	195	13.7447
(((((((...((((.((((.....)).)).))))))))))	chr8:145687775-145688071(-)$1	1	27	67	12.0465
(.(((((((.(.(((((((.....))))))).))))))))	chr3:98451615-98451834(+)$1	1	62	102	12.1214
)).)))(((.(((.((..(((...)))...)).))).)))	chr5:138629655-138629972(+)$1	1	241	281	12.2805
((((((((..((((..(((......)))..)))).)))))	chr12:62996807-62997118(+)$1	1	122	162	17.8669
((((..((.....((((((......))))))...))..))	chr11:637269-637528(+)$1	1	179	219	11.3415
((.(.((.((.(((..((((...)).))..))).)).)).	chr19:1467299-1467542(-)$1	1	150	190	12.0183
(((((((((.(((..((....))..)))..))))))))))	chr17:74381116-74381378(+)$1	1	50	90	11.6703
(.(..((.(..(((.(((((....))))).)))..).)).	chr21:47565643-47565898(-)$1	1	131	171	11.4420
)))(((.((..(((.(((........))).)))..)))))	chr20:32255459-32255706(-)$1	1	78	118	10.4785
.(((.((..(((((((.((((...))))..))))))))).	chr11:702875-703118(-)$1	1	116	156	12.5224
(((((.(((.(((((((((......))).)))))).))).	chr2:232575101-232575353(+)$1	1	171	211	13.5511
(((((((((((((((((.(((....)))..)))).)))))	chr2:231902423-231902682(+)$1	1	132	172	12.1944
((((.((((.(((((.(((.....))).)))))))).).)	chr1:27320446-27320740(+)$1	1	150	190	11.7550
((((((((.(((((.(.(((((....))..))).).))))	chr3:13461595-13461878(-)$1	1	37	77	11.3824
((((((((((((((..(....)..)))))..))).)))))	chr16:725992-726263(+)$1	1	143	183	10.5968
(((((((..(((((.((((..(.....)..))))..))))	chr7:127670459-127670707(+)$1	1	143	183	10.4070
((((.(..((.(((.((((......))))..))).))..)	chr1:36788412-36788683(+)$1	1	1	41	13.5517
).(((((.((((.((.(((......))))).)))).))))	chr17:79860483-79860800(-)$1	1	79	119	10.6544
((((((((((((..(.((......)).)..))))).))))	chr8:103424361-103424610(-)$1	1	122	162	13.9724
)).(((((..(((..((.........))..)))..)))))	chr8:30669833-30670093(-)$1	1	208	248	10.8256
)))))(((..((((.((((.(......).)))).))))..	chr10:75551929-75552212(+)$1	1	20	60	11.4896
(.(((((((((((((.(((......))))))).)))))))	chr16:2029100-2029389(+)$1	1	23	63	15.0767
((((((.((..((((((((......))))))))...)).)	chr19:1468580-1468829(-)$1	1	67	107	12.7448
((((((((((.(((.(((.((....)).))))))...)).	chr1:27320165-27320415(+)$1	1	158	198	11.8466

#PSSM
g : 0.14	d : 0.14	e : 0.14	f : 0.10	i : 0.10	[ : 0.07	c : 0.07	= : 0.07	h : 0.07	! : 0.03	b : 0.03	
g : 0.21	c : 0.14	[ : 0.10	i : 0.10	e : 0.10	d : 0.10	f : 0.07	= : 0.07	h : 0.03	: : 0.03	
g : 0.24	i : 0.14	c : 0.10	e : 0.10	f : 0.07	= : 0.07	d : 0.07	] : 0.03	[ : 0.03	a : 0.03	h : 0.03	: : 0.03	
g : 0.21	c : 0.17	i : 0.14	e : 0.10	f : 0.07	= : 0.07	d : 0.07	$ : 0.03	a : 0.03	! : 0.03	h : 0.03	
g : 0.17	c : 0.14	i : 0.14	[ : 0.14	f : 0.07	! : 0.07	= : 0.07	e : 0.07	d : 0.03	$ : 0.03	h : 0.03	
g : 0.17	c : 0.14	i : 0.14	b : 0.10	= : 0.07	a : 0.07	e : 0.07	f : 0.03	d : 0.03	$ : 0.03	! : 0.03	[ : 0.03	h : 0.03	
g : 0.21	c : 0.21	b : 0.14	! : 0.07	i : 0.07	= : 0.07	[ : 0.07	e : 0.07	d : 0.03	$ : 0.03	
c : 0.17	! : 0.14	g : 0.14	b : 0.10	[ : 0.10	i : 0.07	= : 0.07	e : 0.07	d : 0.03	$ : 0.03	" : 0.03	
b : 0.21	c : 0.17	! : 0.17	[ : 0.07	g : 0.07	f : 0.03	" : 0.03	$ : 0.03	= : 0.03	a : 0.03	d : 0.03	e : 0.03	i : 0.03	
! : 0.21	b : 0.17	[ : 0.17	e : 0.14	g : 0.07	c : 0.03	f : 0.03	" : 0.03	$ : 0.03	d : 0.03	i : 0.03	
e : 0.17	c : 0.14	[ : 0.14	d : 0.14	! : 0.10	f : 0.07	g : 0.07	b : 0.03	a : 0.03	$ : 0.03	i : 0.03	
c : 0.28	d : 0.21	e : 0.17	! : 0.07	f : 0.07	g : 0.07	[ : 0.03	$ : 0.03	h : 0.03	
c : 0.28	d : 0.17	e : 0.14	! : 0.10	g : 0.10	f : 0.07	$ : 0.03	[ : 0.03	h : 0.03	
d : 0.21	e : 0.17	c : 0.17	f : 0.14	! : 0.10	g : 0.07	[ : 0.03	b : 0.03	h : 0.03	
[ : 0.28	! : 0.21	f : 0.10	d : 0.10	e : 0.07	g : 0.07	b : 0.07	a : 0.03	h : 0.03	
[ : 0.17	! : 0.14	b : 0.14	d : 0.14	f : 0.10	e : 0.07	g : 0.07	c : 0.07	a : 0.03	h : 0.03	
c : 0.32	b : 0.17	d : 0.14	e : 0.07	f : 0.07	[ : 0.07	g : 0.03	! : 0.03	a : 0.03	h : 0.03	
c : 0.35	d : 0.14	b : 0.10	e : 0.07	f : 0.07	m : 0.07	g : 0.03	! : 0.03	[ : 0.03	r : 0.03	h : 0.03	
c : 0.35	d : 0.14	o : 0.07	f : 0.07	b : 0.07	m : 0.07	g : 0.03	e : 0.03	q : 0.03	r : 0.03	h : 0.03	[ : 0.03	
o : 0.39	n : 0.10	c : 0.10	b : 0.07	m : 0.07	l : 0.03	e : 0.03	q : 0.03	d : 0.03	! : 0.03	r : 0.03	[ : 0.03	
o : 0.39	n : 0.10	m : 0.10	l : 0.07	c : 0.07	b : 0.07	q : 0.03	d : 0.03	! : 0.03	r : 0.03	a : 0.03	
o : 0.42	l : 0.14	n : 0.10	m : 0.10	b : 0.07	a : 0.07	q : 0.03	r : 0.03	
o : 0.42	n : 0.14	m : 0.14	l : 0.10	f : 0.03	b : 0.03	q : 0.03	2 : 0.03	r : 0.03	
o : 0.42	n : 0.14	m : 0.14	l : 0.07	2 : 0.07	f : 0.03	b : 0.03	q : 0.03	r : 0.03	
o : 0.35	e : 0.10	b : 0.10	m : 0.10	c : 0.07	f : 0.03	g : 0.03	2 : 0.03	q : 0.03	d : 0.03	n : 0.03	r : 0.03	
c : 0.35	e : 0.10	b : 0.10	f : 0.07	d : 0.07	g : 0.03	] : 0.03	q : 0.03	m : 0.03	n : 0.03	r : 0.03	o : 0.03	h : 0.03	
c : 0.39	b : 0.14	e : 0.10	f : 0.07	] : 0.07	d : 0.07	g : 0.03	n : 0.03	o : 0.03	h : 0.03	
c : 0.32	b : 0.14	e : 0.10	a : 0.10	f : 0.07	d : 0.07	] : 0.07	g : 0.03	3 : 0.03	h : 0.03	
2 : 0.39	e : 0.14	] : 0.10	b : 0.07	c : 0.07	d : 0.07	g : 0.03	3 : 0.03	f : 0.03	h : 0.03	
2 : 0.49	d : 0.10	] : 0.10	f : 0.07	g : 0.03	3 : 0.03	e : 0.03	b : 0.03	h : 0.03	c : 0.03	
d : 0.24	c : 0.21	2 : 0.10	f : 0.10	b : 0.07	g : 0.07	e : 0.07	= : 0.03	] : 0.03	h : 0.03	
c : 0.32	d : 0.28	b : 0.07	f : 0.07	e : 0.07	] : 0.03	3 : 0.03	= : 0.03	g : 0.03	h : 0.03	
c : 0.32	d : 0.24	] : 0.10	f : 0.07	e : 0.07	a : 0.03	3 : 0.03	= : 0.03	g : 0.03	h : 0.03	
c : 0.21	d : 0.17	] : 0.14	g : 0.10	2 : 0.10	f : 0.07	3 : 0.07	= : 0.03	e : 0.03	i : 0.03	
] : 0.17	g : 0.14	2 : 0.14	b : 0.10	f : 0.07	c : 0.07	d : 0.07	3 : 0.07	= : 0.03	a : 0.03	e : 0.03	i : 0.03	
g : 0.17	b : 0.17	] : 0.14	i : 0.10	f : 0.07	c : 0.07	3 : 0.07	= : 0.03	a : 0.03	2 : 0.03	e : 0.03	d : 0.03	
g : 0.24	] : 0.14	e : 0.14	i : 0.10	b : 0.10	f : 0.03	7 : 0.03	2 : 0.03	= : 0.03	c : 0.03	d : 0.03	3 : 0.03	
g : 0.21	b : 0.17	e : 0.14	c : 0.10	i : 0.10	2 : 0.07	f : 0.03	7 : 0.03	= : 0.03	a : 0.03	d : 0.03	
g : 0.24	b : 0.14	e : 0.14	c : 0.10	i : 0.10	] : 0.07	2 : 0.07	f : 0.03	7 : 0.03	= : 0.03	
g : 0.24	e : 0.17	i : 0.14	c : 0.07	3 : 0.07	2 : 0.07	] : 0.07	f : 0.03	7 : 0.03	= : 0.03	a : 0.03	

#score	342.9279037949284
#seq	28
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_transcript_m1_run2.txt

#BEAR
!a[ddddvvvvvvvvvvvvvdddd]	chr1:214813641-214813914(+)$1	273	47	72	24.1406
ee!!cccyyyyyyyyyyyyyyyycc	chr8:91385775-91386013(+)$1	238	89	114	21.9558
:bb[cccvvvvvvvvvvvvvccc]b	chr2:96479883-96480197(-)$1	314	150	175	22.8845
eeeecccvvvvvvvvvvvvvccc77	chr10:1111024-1111293(+)$1	269	42	67	23.1561
ccc[ccctttttttttttccc]ccc	chr1:225174684-225174967(+)$1	283	89	114	21.9314
::ccc[bbuuuuuuuuuuuubb]cc	chr15:29272233-29272544(+)$1	311	230	255	20.7726
fffffbbyyyyyyyyyyyyyyyybb	chr3:195152353-195152629(-)$1	276	82	107	20.5041
dgggggggtttttttttttgggggg	chr13:92990858-92991199(+)$1	341	224	249	22.0850
ggg[bbccctttttttttttccc]b	chr4:510921-511241(+)$1	320	83	108	21.8838
a[a!!ddddtttttttttttdddd3	chr7:158730653-158730915(+)$1	262	224	249	21.6113
ggggggwwwwwwwwwwwwwwggggg	chr15:40913089-40913334(+)$1	245	15	40	23.3388
hhhhhbbvvvvvvvvvvvvvbb]hh	chr2:109088096-109088376(+)$1	280	188	213	22.8816
iiiiiiiiuuuuuuuuuuuuiiiii	chr21:47652590-47652938(+)$1	348	158	183	23.8565
cc[ddddvvvvvvvvvvvvvdddd2	chr1:22010046-22010320(-)$1	274	126	151	23.8539
iiiddddyyyyyyyyyyyyyyyydd	chr1:42766564-42766844(-)$1	280	103	128	21.5070
=========ttttttttttt=====	chrX:113173288-113173573(-)$1	285	56	81	22.8014
!!eeeeevvvvvvvvvvvvveeeee	chr21:38798355-38798658(+)$1	303	110	135	24.3329
ee!!eeeeettttttttttteeeee	chr7:43740668-43740943(-)$1	275	234	259	21.6332
dd"""bbvvvvvvvvvvvvvbb22d	chr2:63108289-63108580(+)$1	291	229	254	23.0298
gggggggvvvvvvvvvvvvvggggg	chr3:15087301-15087578(-)$1	277	105	130	24.8167
ddd:cccyyyyyyyyyyyyyyyycc	chr11:65267196-65267399(+)$1	203	49	74	20.2256
ggggggwwwwwwwwwwwwwwggggg	chr2:112056183-112056494(-)$1	311	201	226	23.3388
gggggggvvvvvvvvvvvvvggggg	chr2:3471326-3471617(+)$1	291	199	224	24.8167
ccc[bbwwwwwwwwwwwwwwbb22c	chr7:87511958-87512225(+)$1	267	165	190	21.9052
gggggggvvvvvvvvvvvvvggggg	chr7:127571065-127571356(+)$1	291	171	196	24.8167
=======yyyyyyyyyyyyyyyy==	chr22:48231020-48231269(+)$1	249	83	108	22.4452
ggggggwwwwwwwwwwwwwwggggg	chr22:17529061-17529341(+)$1	280	156	181	23.3388
hhhh[bbwwwwwwwwwwwwwwbb33	chr21:36317755-36318021(-)$1	266	191	216	22.1125
"""ddddvvvvvvvvvvvvvdddd6	chr15:90750023-90750292(+)$1	269	154	179	23.4991
=======vvvvvvvvvvvvv=====	chr1:225122822-225123068(+)$1	246	173	198	25.2659
c!!cccyyyyyyyyyyyyyyyyccc	chr5:53659397-53659760(+)$1	363	83	108	21.9652
c[eeeeeuuuuuuuuuuuueeeee]	chr3:33587969-33588273(-)$1	304	138	163	23.0781
ffff[bbwwwwwwwwwwwwwwbb]f	chr18:13107933-13108225(+)$1	292	194	219	22.1437
[ffffffuuuuuuuuuuuuffffff	chr6:52248772-52249039(+)$1	267	39	64	22.0778
ee[ddddwwwwwwwwwwwwwwdddd	chr15:27344777-27345047(+)$1	270	221	246	22.5621
gggggggtttttttttttggggggg	chr7:64522477-64522804(+)$1	327	260	285	21.7566
f:eeeeevvvvvvvvvvvvveeeee	chr4:73354837-73355146(-)$1	309	190	215	23.0462
ggggggguuuuuuuuuuuugggggg	chr2:37833861-37834235(+)$1	374	308	333	23.5063
iiiiibbvvvvvvvvvvvvvbb]ii	chr2:3475961-3476262(+)$1	301	57	82	24.3492
fff[cccvvvvvvvvvvvvvcccff	chr6:167407935-167408221(-)$1	286	141	166	24.2688
""eeeeeyyyyyyyyyyyyyyyyee	chr21:15414239-15414546(+)$1	307	137	162	21.6022
ff[ddddvvvvvvvvvvvvvdddd]	chr7:93344416-93344697(+)$1	281	62	87	23.9470
bb[dddduuuuuuuuuuuuddddbb	chrX:113107996-113108284(-)$1	288	1	26	21.7924
fffffbbuuuuuuuuuuuubb]fff	chr15:51355018-51355301(+)$1	283	162	187	21.9491
cc"""ccctttttttttttccc444	chr11:62292324-62292588(-)$1	264	89	114	22.4039
ddd:cccyyyyyyyyyyyyyyyycc	chr11:65267172-65267376(+)$1	204	73	98	20.2256
========uuuuuuuuuuuu=====	chr11:43483750-43484020(+)$1	270	227	252	24.3035
hhhcccwwwwwwwwwwwwwwccc33	chr7:119523988-119524256(-)$1	268	123	148	22.7161
gggggggtttttttttttggggggg	chr1:51370319-51370592(-)$1	273	187	212	21.7566
f[eeeeevvvvvvvvvvvvveeeee	chr7:120895790-120896046(+)$1	256	7	32	24.1961
::eeeeevvvvvvvvvvvvveeeee	chr2:168744565-168744948(-)$1	383	267	292	22.1272
$$$ddddvvvvvvvvvvvvvdddd3	chr11:65267285-65267488(+)$1	203	118	143	23.3456
b[ccc!!attttttttttta22ccc	chr4:120408564-120408823(+)$1	259	93	118	22.3689
=======wwwwwwwwwwwwww====	chr13:51056537-51056811(+)$1	274	81	106	23.9272
gg[ddddvvvvvvvvvvvvvddddg	chr7:119537992-119538275(-)$1	283	56	81	24.2584
##eeeeewwwwwwwwwwwwwweeee	chr17:6784714-6785008(-)$1	294	137	162	22.8410
e[eeeeevvvvvvvvvvvvveeeee	chr22:48196524-48196800(+)$1	276	118	143	24.2217
ee:eeeeeuuuuuuuuuuuueeeee	chr4:13446242-13446543(-)$1	301	232	257	21.8468
[ffffffvvvvvvvvvvvvvfffff	chr7:43741009-43741260(-)$1	251	174	199	23.3471
eeeeeyyyyyyyyyyyyyyyyeeee	chr11:65739060-65739351(+)$1	291	20	45	21.1268
iiii[cccuuuuuuuuuuuuccc]i	chr11:65267558-65267767(+)$1	209	122	147	24.0417
eeeeeeeeettttttttttteeeee	chr3:6616448-6616690(+)$1	242	194	219	21.3333
ee####bbuuuuuuuuuuuubb444	chr9:95001379-95001639(-)$1	260	158	183	22.4932

#otherMatches

#Seq PSSM
AUGGACAGAGAAAACCUAAGUGUCG	chr1:214813641-214813914(+)$1	273	47	72	24.1406
ucagguagacaagaaaaaagaaaua	chr8:91385775-91386013(+)$1	238	89	114	21.9558
AUCAGGAGAAGAAAAGGAGAUCCAG	chr2:96479883-96480197(-)$1	314	150	175	22.8845
aauggacagcaaaaauaucggucaa	chr10:1111024-1111293(+)$1	269	42	67	23.1561
cauuuacaauagcuacaAGUAUAUG	chr1:225174684-225174967(+)$1	283	89	114	21.9314
aaggcauccaaauaagaaaagaagc	chr15:29272233-29272544(+)$1	311	230	255	20.7726
cagugggaauguaaaauggugagcc	chr3:195152353-195152629(-)$1	276	82	107	20.5041
uuugugcagaccuaaagaauguaca	chr13:92990858-92991199(+)$1	341	224	249	22.0850
uuugugcuguaggaggagaccaguc	chr4:510921-511241(+)$1	320	83	108	21.8838
ggugaaggagaaagagaagauccua	chr7:158730653-158730915(+)$1	262	224	249	21.6113
UUCAAUGACUUCAUAAAAAGAUUGA	chr15:40913089-40913334(+)$1	245	15	40	23.3388
AGAGACUAUGAGCAAGAGAAAGUUC	chr2:109088096-109088376(+)$1	280	188	213	22.8816
uucagcuguacagcagacaccagcu	chr21:47652590-47652938(+)$1	348	158	183	23.8565
auauuucaaaagagcuagaagaaaa	chr1:22010046-22010320(-)$1	274	126	151	23.8539
agucugggaagagauuuagacaucc	chr1:42766564-42766844(-)$1	280	103	128	21.5070
aaucaggugagcaauaauaguaccu	chrX:113173288-113173573(-)$1	285	56	81	22.8014
AGAAGAUAAAAGCACAGGAGAUCUU	chr21:38798355-38798658(+)$1	303	110	135	24.3329
aaagauuuuaaaaaguaaaaaaGAU	chr7:43740668-43740943(-)$1	275	234	259	21.6332
cugaaccuguaauacaaguuggaaa	chr2:63108289-63108580(+)$1	291	229	254	23.0298
UGUCUUAACCCAACAUUAUCUGAGA	chr3:15087301-15087578(-)$1	277	105	130	24.8167
aggaagcagaagaaaaaagacaagc	chr11:65267196-65267399(+)$1	203	49	74	20.2256
agacgucauuaccgcaacucacguu	chr2:112056183-112056494(-)$1	311	201	226	23.3388
CACCCAGUUCUGAAACACUCCUGGG	chr2:3471326-3471617(+)$1	291	199	224	24.8167
guuaacaaagauuugaagaaguaga	chr7:87511958-87512225(+)$1	267	165	190	21.9052
gcccaggaguugcagaucagccugg	chr7:127571065-127571356(+)$1	291	171	196	24.8167
uuuuuacucugaaaaaaagccaugu	chr22:48231020-48231269(+)$1	249	83	108	22.4452
GUUCCCAUGCUGUGGGAAUAGGGAA	chr22:17529061-17529341(+)$1	280	156	181	23.3388
GGAGAGCAGUGGGAGUAAAAAGCAG	chr21:36317755-36318021(-)$1	266	191	216	22.1125
GAACUUCUAAUGCAAGAAAUGAAGA	chr15:90750023-90750292(+)$1	269	154	179	23.4991
gcugaauggauuuuaaaaagauuca	chr1:225122822-225123068(+)$1	246	173	198	25.2659
gaaucuagauauaauugaagacaga	chr5:53659397-53659760(+)$1	363	83	108	21.9652
ugauaaaugaagaaauaauuuuaua	chr3:33587969-33588273(-)$1	304	138	163	23.0781
caccauguauaaaaauuaacucaag	chr18:13107933-13108225(+)$1	292	194	219	22.1437
AGUGAAAAAAAGGGACAGGUUUUGC	chr6:52248772-52249039(+)$1	267	39	64	22.0778
cuacagccacuaaagggauaaguug	chr15:27344777-27345047(+)$1	270	221	246	22.5621
caggugcaugagaggagagcaccug	chr7:64522477-64522804(+)$1	327	260	285	21.7566
gucugcacuuucauauucauugcag	chr4:73354837-73355146(-)$1	309	190	215	23.0462
cauugccaauaaacucccaggugau	chr2:37833861-37834235(+)$1	374	308	333	23.5063
GAAGCUGGGAAAGACUUGAGCACGU	chr2:3475961-3476262(+)$1	301	57	82	24.3492
agacagcaaagccaacccccgcuuc	chr6:167407935-167408221(-)$1	286	141	166	24.2688
auuccugaauaagaaaaugaagccg	chr21:15414239-15414546(+)$1	307	137	162	21.6022
UUAUUUCAGAAAUAAAACAGGAAGG	chr7:93344416-93344697(+)$1	281	62	87	23.9470
gagucuggaaaauaaaaaacggguc	chrX:113107996-113108284(-)$1	288	1	26	21.7924
uggcucugaagauggauggagaagu	chr15:51355018-51355301(+)$1	283	162	187	21.9491
CAAAGUGGAUAUUAAUGCCCCAGAU	chr11:62292324-62292588(-)$1	264	89	114	22.4039
aggaagcagaagaaaaaagacaagc	chr11:65267172-65267376(+)$1	204	73	98	20.2256
ugugugacaauagaggcagaguuau	chr11:43483750-43484020(+)$1	270	227	252	24.3035
guaggaaaaaaaucuaauaauccaa	chr7:119523988-119524256(-)$1	268	123	148	22.7161
AUUAUUAUUUAGGACCAUUAGUAAU	chr1:51370319-51370592(-)$1	273	187	212	21.7566
uagcauuucuauacaccaauaaugu	chr7:120895790-120896046(+)$1	256	7	32	24.1961
aaucaggaagaauuagauacccuga	chr2:168744565-168744948(-)$1	383	267	292	22.1272
aaguauagaagauagaaaaauauaa	chr11:65267285-65267488(+)$1	203	118	143	23.3456
aggggaacaacacacacuggggccu	chr4:120408564-120408823(+)$1	259	93	118	22.3689
aguagacagguugacuaaaaaguuu	chr13:51056537-51056811(+)$1	274	81	106	23.9272
uacuuauaaauugaagcuaaaugau	chr7:119537992-119538275(-)$1	283	56	81	24.2584
uggguacaaaaaaauuagaaagugu	chr17:6784714-6785008(-)$1	294	137	162	22.8410
uauuuggagaggcaaaauacccaga	chr22:48196524-48196800(+)$1	276	118	143	24.2217
cuguuaucaaaaagacaaaagguaa	chr4:13446242-13446543(-)$1	301	232	257	21.8468
acauacacaccauggaauacugugu	chr7:43741009-43741260(-)$1	251	174	199	23.3471
CUGAGGAGGGGGAUGGUGGGAUUCA	chr11:65739060-65739351(+)$1	291	20	45	21.1268
UUUUGGAAGAGUUAGAAGAAUUUGG	chr11:65267558-65267767(+)$1	209	122	147	24.0417
cuguggaguuuuuacuaccuacucc	chr3:6616448-6616690(+)$1	242	194	219	21.3333
uuaccacagaaaggaaauaaugaaa	chr9:95001379-95001639(-)$1	260	158	183	22.4932

#DB
.(.((((.............)))).	chr1:214813641-214813914(+)$1	1	47	72	24.1406
((..(((................))	chr8:91385775-91386013(+)$1	1	89	114	21.9558
.((.(((.............))).)	chr2:96479883-96480197(-)$1	1	150	175	22.8845
(((((((.............)))..	chr10:1111024-1111293(+)$1	1	42	67	23.1561
(((.(((...........))).)))	chr1:225174684-225174967(+)$1	1	89	114	21.9314
..(((.((............)).))	chr15:29272233-29272544(+)$1	1	230	255	20.7726
(((((((................))	chr3:195152353-195152629(-)$1	1	82	107	20.5041
)(((((((...........))))))	chr13:92990858-92991199(+)$1	1	224	249	22.0850
(((.(((((...........))).)	chr4:510921-511241(+)$1	1	83	108	21.8838
(.(..((((...........)))).	chr7:158730653-158730915(+)$1	1	224	249	21.6113
((((((..............)))))	chr15:40913089-40913334(+)$1	1	15	40	23.3388
(((((((.............)).))	chr2:109088096-109088376(+)$1	1	188	213	22.8816
((((((((............)))))	chr21:47652590-47652938(+)$1	1	158	183	23.8565
((.((((.............)))).	chr1:22010046-22010320(-)$1	1	126	151	23.8539
)))((((................))	chr1:42766564-42766844(-)$1	1	103	128	21.5070
(((((((((...........)))))	chrX:113173288-113173573(-)$1	1	56	81	22.8014
..(((((.............)))))	chr21:38798355-38798658(+)$1	1	110	135	24.3329
((..(((((...........)))))	chr7:43740668-43740943(-)$1	1	234	259	21.6332
((...((.............))..)	chr2:63108289-63108580(+)$1	1	229	254	23.0298
(((((((.............)))))	chr3:15087301-15087578(-)$1	1	105	130	24.8167
))).(((................))	chr11:65267196-65267399(+)$1	1	49	74	20.2256
((((((..............)))))	chr2:112056183-112056494(-)$1	1	201	226	23.3388
(((((((.............)))))	chr2:3471326-3471617(+)$1	1	199	224	24.8167
(((.((..............))..)	chr7:87511958-87512225(+)$1	1	165	190	21.9052
(((((((.............)))))	chr7:127571065-127571356(+)$1	1	171	196	24.8167
(((((((................))	chr22:48231020-48231269(+)$1	1	83	108	22.4452
((((((..............)))))	chr22:17529061-17529341(+)$1	1	156	181	23.3388
((((.((..............))..	chr21:36317755-36318021(-)$1	1	191	216	22.1125
...((((.............)))).	chr15:90750023-90750292(+)$1	1	154	179	23.4991
(((((((.............)))))	chr1:225122822-225123068(+)$1	1	173	198	25.2659
(..(((................)))	chr5:53659397-53659760(+)$1	1	83	108	21.9652
(.(((((............))))).	chr3:33587969-33588273(-)$1	1	138	163	23.0781
((((.((..............)).)	chr18:13107933-13108225(+)$1	1	194	219	22.1437
.((((((............))))))	chr6:52248772-52249039(+)$1	1	39	64	22.0778
((.((((..............))))	chr15:27344777-27345047(+)$1	1	221	246	22.5621
(((((((...........)))))))	chr7:64522477-64522804(+)$1	1	260	285	21.7566
).(((((.............)))))	chr4:73354837-73355146(-)$1	1	190	215	23.0462
(((((((............))))))	chr2:37833861-37834235(+)$1	1	308	333	23.5063
(((((((.............)).))	chr2:3475961-3476262(+)$1	1	57	82	24.3492
(((.(((.............)))))	chr6:167407935-167408221(-)$1	1	141	166	24.2688
..(((((................))	chr21:15414239-15414546(+)$1	1	137	162	21.6022
((.((((.............)))).	chr7:93344416-93344697(+)$1	1	62	87	23.9470
((.((((............))))))	chrX:113107996-113108284(-)$1	1	1	26	21.7924
(((((((............)).)))	chr15:51355018-51355301(+)$1	1	162	187	21.9491
((...(((...........)))...	chr11:62292324-62292588(-)$1	1	89	114	22.4039
))).(((................))	chr11:65267172-65267376(+)$1	1	73	98	20.2256
((((((((............)))))	chr11:43483750-43484020(+)$1	1	227	252	24.3035
((((((..............)))..	chr7:119523988-119524256(-)$1	1	123	148	22.7161
(((((((...........)))))))	chr1:51370319-51370592(-)$1	1	187	212	21.7566
(.(((((.............)))))	chr7:120895790-120896046(+)$1	1	7	32	24.1961
..(((((.............)))))	chr2:168744565-168744948(-)$1	1	267	292	22.1272
...((((.............)))).	chr11:65267285-65267488(+)$1	1	118	143	23.3456
(.(((..(...........)..)))	chr4:120408564-120408823(+)$1	1	93	118	22.3689
(((((((..............))))	chr13:51056537-51056811(+)$1	1	81	106	23.9272
((.((((.............)))))	chr7:119537992-119538275(-)$1	1	56	81	24.2584
..(((((..............))))	chr17:6784714-6785008(-)$1	1	137	162	22.8410
(.(((((.............)))))	chr22:48196524-48196800(+)$1	1	118	143	24.2217
)).(((((............)))))	chr4:13446242-13446543(-)$1	1	232	257	21.8468
.((((((.............)))))	chr7:43741009-43741260(-)$1	1	174	199	23.3471
(((((................))))	chr11:65739060-65739351(+)$1	1	20	45	21.1268
((((.(((............))).)	chr11:65267558-65267767(+)$1	1	122	147	24.0417
))))(((((...........)))))	chr3:6616448-6616690(+)$1	1	194	219	21.3333
((....((............))...	chr9:95001379-95001639(-)$1	1	158	183	22.4932

#PSSM
g : 0.17	e : 0.14	f : 0.11	c : 0.09	= : 0.07	d : 0.06	i : 0.06	: : 0.04	h : 0.04	! : 0.03	" : 0.03	[ : 0.03	b : 0.03	a : 0.01	$ : 0.01	# : 0.01	
g : 0.19	e : 0.12	f : 0.11	[ : 0.07	= : 0.07	c : 0.06	i : 0.06	: : 0.04	h : 0.04	d : 0.04	b : 0.03	! : 0.03	" : 0.03	a : 0.01	$ : 0.01	# : 0.01	
e : 0.17	g : 0.17	[ : 0.09	f : 0.09	= : 0.07	c : 0.06	i : 0.06	! : 0.04	h : 0.04	" : 0.04	d : 0.03	b : 0.01	a : 0.01	$ : 0.01	: : 0.01	# : 0.01	
e : 0.19	g : 0.15	d : 0.14	[ : 0.07	f : 0.07	= : 0.07	c : 0.06	! : 0.04	i : 0.04	h : 0.03	" : 0.03	: : 0.03	# : 0.01	
e : 0.19	c : 0.17	g : 0.15	d : 0.14	= : 0.07	f : 0.06	[ : 0.04	b : 0.03	i : 0.03	" : 0.03	! : 0.01	h : 0.01	# : 0.01	
c : 0.17	e : 0.17	d : 0.15	g : 0.15	b : 0.14	= : 0.07	f : 0.03	[ : 0.01	i : 0.01	! : 0.01	y : 0.01	# : 0.01	
e : 0.17	d : 0.15	c : 0.15	b : 0.14	g : 0.11	w : 0.07	= : 0.07	y : 0.03	f : 0.03	i : 0.01	! : 0.01	
v : 0.34	w : 0.15	y : 0.14	u : 0.07	t : 0.04	c : 0.04	e : 0.04	b : 0.03	= : 0.03	g : 0.01	d : 0.01	i : 0.01	a : 0.01	
v : 0.34	u : 0.17	w : 0.15	y : 0.14	t : 0.09	e : 0.03	c : 0.01	d : 0.01	= : 0.01	
v : 0.34	t : 0.17	u : 0.17	w : 0.15	y : 0.14	
v : 0.34	t : 0.17	u : 0.17	w : 0.15	y : 0.14	
v : 0.34	t : 0.17	u : 0.17	w : 0.15	y : 0.14	
v : 0.34	t : 0.17	u : 0.17	w : 0.15	y : 0.14	
v : 0.34	t : 0.17	u : 0.17	w : 0.15	y : 0.14	
v : 0.34	t : 0.17	u : 0.17	w : 0.15	y : 0.14	
v : 0.34	t : 0.17	u : 0.17	w : 0.15	y : 0.14	
v : 0.34	t : 0.17	u : 0.17	w : 0.15	y : 0.14	
v : 0.34	t : 0.17	u : 0.17	w : 0.15	y : 0.14	
v : 0.34	u : 0.17	w : 0.15	y : 0.14	t : 0.12	g : 0.03	c : 0.01	
v : 0.34	w : 0.15	y : 0.14	u : 0.09	t : 0.07	g : 0.06	c : 0.03	e : 0.01	f : 0.01	d : 0.01	b : 0.01	a : 0.01	
g : 0.15	y : 0.14	e : 0.14	d : 0.12	c : 0.12	b : 0.11	w : 0.07	= : 0.04	f : 0.03	i : 0.01	2 : 0.01	
e : 0.17	g : 0.15	d : 0.14	y : 0.12	b : 0.12	c : 0.11	= : 0.06	] : 0.03	f : 0.03	i : 0.01	2 : 0.01	
e : 0.17	g : 0.15	d : 0.14	c : 0.14	y : 0.11	= : 0.06	] : 0.04	f : 0.04	2 : 0.03	b : 0.03	4 : 0.03	i : 0.01	
e : 0.19	g : 0.15	d : 0.14	c : 0.11	= : 0.07	] : 0.06	f : 0.06	b : 0.03	i : 0.03	2 : 0.03	3 : 0.03	4 : 0.03	7 : 0.01	h : 0.01	
g : 0.17	e : 0.17	c : 0.12	= : 0.07	f : 0.07	b : 0.06	3 : 0.06	] : 0.04	i : 0.04	d : 0.04	4 : 0.03	7 : 0.01	h : 0.01	2 : 0.01	6 : 0.01	

#score	1435.670204327623
#seq	63
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF440FET_XPO5_transcript_m1_run2.txt

#BEAR
========hhhhhhhh[bbmmmmbb22hhhhhhhh]====	chr11:65211887-65212116(+)$1	229	65	105	16.2473
===========!!cccrrrrrrrrrccc===========]	chr9:107645062-107645312(-)$1	250	199	239	16.1148
c[ccc[iiiiiiiii[cccmmmmccciiiiiiiii]ccc]	chr20:61540803-61541078(-)$1	275	107	147	18.9944
""bb$$$$$==========oooooo==========bb]ee	chr1:91437466-91437727(-)$1	261	148	188	16.1807
========[adddd!!aooooooa22dddd]a]=======	chr10:77826607-77826860(+)$1	253	106	146	15.8762
iiiiiiii[ggggggg[bbmmmmbb]ggggggg]iiiiii	chr17:80890629-80890886(+)$1	257	101	141	19.3703
iiiiiiiii[bb####cccmmmmccc4444bb22iiiiii	chr6:138728559-138728790(+)$1	231	157	197	16.3528
=========[a!!eeeeeooooooeeeee22a]=======	chr16:11664126-11664347(-)$1	221	59	99	16.7181
iiiii[ffffff!!eeeeemmmmeeeeeffffffiiiiii	chrX:20037066-20037332(-)$1	266	102	142	14.4287
eeee[gggggggbb[cccooooooccc]bb]ggggggg22	chr19:893459-893690(+)$1	231	175	215	14.5221
fffff]bbgggggggbboooooobb333gggggggiiiii	chr1:156346819-156347064(+)$1	245	30	70	14.7583
e####ccc[ggggggg[bbmmmmbb]ggggggg]ccc22e	chr6:16458956-16459173(-)$1	217	100	140	16.5759
f!!a[a[ccc[ccceeeeemmmmeeeee]ccc]ccc]a]a	chr12:53906017-53906236(-)$1	219	56	96	15.0338
bb[ggggggg[eeeeebboooooobb]eeeee]ggggggg	chr7:158379649-158379878(-)$1	229	98	138	14.0270
oggggggga==========mmmm==========iiiiiii	chr17:57971093-57971321(+)$1	228	61	101	20.4678
:ggggggg!!iiiiiiiiimmmmiiiiiiiii22gggggg	chr17:62532255-62532510(+)$1	255	66	106	18.2550
"ccc[a[ggggggga[ddddllldddd22a]ggggggg]a	chr19:5041766-5042055(+)$1	289	29	69	14.3943
ddd[============[bbmmmmbb]============]d	chr9:126552926-126553191(-)$1	265	92	132	19.8297
===================mmmm=================	chr4:89689570-89689823(-)$1	253	66	106	22.1076
d[iiiiiiiii!!ffffffmmmmffffff22iiiiiiiii	chr11:1972988-1973252(+)$1	264	186	226	16.6622
=!!eeeee[gggggggcccmmmmccc22gggggggeeeee	chr11:66915680-66915938(+)$1	258	99	139	15.9530
""eeeee[ccc[gggggggmmmmggggggg]ccceeeee2	chr16:83987244-83987510(+)$1	266	106	146	14.8734
[dddd[ccc==========mmmm==========]ccc]dd	chr17:48830579-48830819(+)$1	240	108	148	17.9878
gggggg[a####gggggggoooooogggggggaggggggg	chr20:62318538-62318757(+)$1	219	158	198	16.4401
###iiiiiiiii[dddd[ammmma]dddd]iiiiiiiii3	chr8:125640613-125640835(-)$1	222	57	97	17.7023
cc[dddd!!ggggggg[bbmmmmbbggggggg22dddd]c	chr2:242642260-242642510(+)$1	250	82	122	15.1725
:ggggggg"""hhhhhhhhmmmmhhhhhhhh333gggggg	chr22:40960763-40961018(-)$1	255	87	127	14.3379
=====!!ccchhhhhhhhoooooohhhhhhhh]ccc22==	chr9:74361626-74361915(-)$1	289	90	130	14.4424
d!!iiiiiiiii[a[ddddmmmmdddda]iiiiiiiii22	chr9:130888235-130888495(-)$1	260	99	139	17.7266
hhhh[bbggggggg[ddddmmmmddddggggggg333bbh	chr14:100029601-100029852(-)$1	251	75	115	14.4271
f!!a[a[ccc[ccceeeeemmmmeeeee]ccc]ccc]a]a	chr12:53906036-53906267(-)$1	231	87	127	15.0338
gggg!!iiiiiiiii[ccclllccc]iiiiiiiii22ggg	chr12:26914056-26914307(-)$1	251	84	124	17.8718
==================oooooo================	chr4:166008371-166008670(-)$1	299	87	127	20.9913
iiiiiiii[ggggggg[bbmmmmbb]gggggggiiiiiii	chr21:47569433-47569644(-)$1	211	92	132	19.4794
fffiiiiiiiii####cccmmmmccciiiiiiiii::ddd	chr15:79285826-79286082(-)$1	256	127	167	15.5653
d"""bb[bb[iiiiiiiiimmmmiiiiiiiii]bb]bbdd	chr3:38178385-38178652(-)$1	267	153	193	16.1371
cc[bb[=============nnnnn=============]bb	chr14:55169843-55170175(+)$1	332	123	163	17.3451
ccca[bb!!eeeee!!cccmmmmccc]eeeee]bb]a]cc	chr16:16272769-16273017(-)$1	248	81	121	13.9623
ffffggggggg[gggggggmmmmggggggg]ggggggg22	chr16:55851833-55852083(-)$1	250	81	121	17.1212
ggggggg[iiiiiiiiibbmmmmbb22iiiiiiiii]ggg	chr11:64073290-64073526(+)$1	236	120	160	19.2210
=========="""ddddoooooodddd4444=========	chr22:19417923-19418183(-)$1	260	194	234	16.6729
dd[bb!!ggggggg[cccammmma]ccc]ggggggg22bb	chr14:104164642-104164962(-)$1	320	112	152	16.0646
!bb[ggggggg!!ccc[bbmmmmbb22ccc22gggggggb	chr1:15285145-15285404(+)$1	259	85	125	15.6601
gggg[cccbb[gggggggnnnnngggggggbb]ccc]ggg	chr8:26220403-26220677(+)$1	274	108	148	13.8815
d[bb[iiiiiiiii!!cccmmmmccc333iiiiiiiiibb	chr5:149890169-149890417(+)$1	248	82	122	18.6763
iiiiiiiii[iiiiiiiiimmmmiiiiiiiii]iiiiiii	chr1:160194490-160194787(-)$1	297	117	157	21.0113
ggggg[a!!===========lll===========aggggg	chr20:60907744-60908003(-)$1	259	183	223	19.0274
%ccc!!ccc[ccc"""cccooooooccc]ccc]ccc4444	chr17:80218026-80218286(-)$1	260	126	166	14.0304
===============!!bbmmmmbb===============	chr18:77894632-77894891(+)$1	259	22	62	21.3630
!bbeeeee[==========lll==========]eeeee]b	chr17:78081186-78081419(+)$1	233	83	123	16.1304
:ggggggg===========mmmm===========]ggggg	chr14:31467655-31467929(-)$1	274	98	138	19.4651

#otherMatches

#Seq PSSM
GGCUUCUGAGCUCCUUAGCACUAGCAGGAGGGGCUCCAGG	chr11:65211887-65212116(+)$1	229	65	105	16.2473
UCUUCUCUGGGAAGACAGAAGAAAAGUCCCCAGGGAAGAA	chr9:107645062-107645312(-)$1	250	199	239	16.1148
CAGGACGGGUGCUGCACCCAUGUGGGGCGGUGCCUCUCCC	chr20:61540803-61541078(-)$1	275	107	147	18.9944
ucagccuccugaguagcugggacuacagcugcUUACUUGC	chr1:91437466-91437727(-)$1	261	148	188	16.1807
CUGGUCUGAGGCUGCCACAGUGUUCCCAGCACCCAGGCCA	chr10:77826607-77826860(+)$1	253	106	146	15.8762
GGUCAGUUAUGGUGACUGUAAAUACCGUCAUCACAGCUGG	chr17:80890629-80890886(+)$1	257	101	141	19.3703
uaccaggcucgaauugcacaccgguggcccucccagucug	chr6:138728559-138728790(+)$1	231	157	197	16.3528
GGGUACAGAACAGGUCCCUGUGGCGGGAUGAGGUCUGUGc	chr16:11664126-11664347(-)$1	221	59	99	16.7181
uggggcugcaguaagcugugauggcagcacugcacuccaa	chrX:20037066-20037332(-)$1	266	102	142	14.4287
uugcccaggcuggaaugcaauggcgcgaucuuagcuuguu	chr19:893459-893690(+)$1	231	175	215	14.5221
CUUUACUCCCUUGCUCUGACACGAGGACAGCAGGGAUGUC	chr1:156346819-156347064(+)$1	245	30	70	14.7583
ggcuucuggcccggagaaccuuuguccucuggggcaguac	chr6:16458956-16459173(-)$1	217	100	140	16.5759
GAACUCAACUCGGUCUGGGUCUCCCCAGUGCCCAGUGGUG	chr12:53906017-53906236(-)$1	219	56	96	15.0338
CCGGGGGUCUCGGGGUUCCAGCGCGACACCCCCAGGCUCU	chr7:158379649-158379878(-)$1	229	98	138	14.0270
AGGAAGCGCUCAGCUGUUAGAAGUGACAGCUGAAAACUUC	chr17:57971093-57971321(+)$1	228	61	101	20.4678
uguaaucccagcacuuugggaagcugaggugcaaggauug	chr17:62532255-62532510(+)$1	255	66	106	18.2550
GGUCCCCCAGGCCCCGCUGGACGCCAGAAGUGGGCCUGCG	chr19:5041766-5042055(+)$1	289	29	69	14.3943
GGAGAGUGUAUGUGUACGUAUAUGCAUACACAUGUACUAU	chr9:126552926-126553191(-)$1	265	92	132	19.8297
uguauaugugugugugcauauauauguauauacauauaua	chr4:89689570-89689823(-)$1	253	66	106	22.1076
CAGCACUGGUGUUGCUGGGGCUGCCUGGCCUCACUAGUGC	chr11:1972988-1973252(+)$1	264	186	226	16.6622
ugcuugggaggucgaggccaaagggucgcuugacccccgg	chr11:66915680-66915938(+)$1	258	99	139	15.9530
CUGGGUUUCUGCUUCUCCUGCUCAGGAGGGACAGAGCCCU	chr16:83987244-83987510(+)$1	266	106	146	14.8734
GAGGGUCCUGUGGCUUCAUGUUUAUGGAGUUGCUAGGUCU	chr17:48830579-48830819(+)$1	240	108	148	17.9878
UGCAGAAGUUUAGGGUUGGAGUGGGCUGACCUCUCUGCAG	chr20:62318538-62318757(+)$1	219	158	198	16.4401
CCUGCUGUGGGGGCUGGUGGGAGCUCCAGGUUCCACAGCU	chr8:125640613-125640835(-)$1	222	57	97	17.7023
GGCGCUGCACUGGGGAUCCUCAUGGUCUUCGGCCUGGCAC	chr2:242642260-242642510(+)$1	250	82	122	15.1725
uguaauccuagcacuuugggaagccgaggugggcggauug	chr22:40960763-40961018(-)$1	255	87	127	14.3379
AGCCACUUGCCUCUUUCAUUUUGUUGGGAGAGUGCACAUG	chr9:74361626-74361915(-)$1	289	90	130	14.4424
GCAGCAGGCUCCCCUGGGGGCUUUCCUGCGGAGCUUGCCA	chr9:130888235-130888495(-)$1	260	99	139	17.7266
AGGGUGAGGGGGGCGUGGCUUGGGCCAGUUUCCCAGGUCU	chr14:100029601-100029852(-)$1	251	75	115	14.4271
GAACUCAACUCGGUCUGGGUCUCCCCAGUGCCCAGUGGUG	chr12:53906036-53906267(-)$1	231	87	127	15.0338
accaaucagcccguccagagauucuugaugggcugucugg	chr12:26914056-26914307(-)$1	251	84	124	17.8718
cuggauaggauuggugaucagucagucaucagucuuauuc	chr4:166008371-166008670(-)$1	299	87	127	20.9913
CUGGGGUGUGGCAGCGUCUGCAGAGCCGCUGUCCGCCUUG	chr21:47569433-47569644(-)$1	211	92	132	19.4794
UGAGGGUCCCCUCCCUGUGAGCACACAGGGGAUCCCCUGC	chr15:79285826-79286082(-)$1	256	127	167	15.5653
CACCUGAGGGGUCCGGCCGAUUCCGGCUGGAUGCCGCAGG	chr3:38178385-38178652(-)$1	267	153	193	16.1371
UGCGUGGGGAGAGCGGAGGACAGCCCUCUGCUCUUUUGAC	chr14:55169843-55170175(+)$1	332	123	163	17.3451
GUUGAGCUGUACCUCACCCUGAUGGGCAGGUGUGCCCUGA	chr16:16272769-16273017(-)$1	248	81	121	13.9623
UCACUGGACUCUGCUUGUGUUUCCAUGAGUUGAGUCCAAU	chr16:55851833-55852083(-)$1	250	81	121	17.1212
GCCUGGGGCAGGAUCUGGCUCUGGCUGCGGGUCCUGACUC	chr11:64073290-64073526(+)$1	236	120	160	19.2210
GGAGCGAGAAUAGAUAUUUUAACAUGUGGCUUUUUCGUUU	chr22:19417923-19418183(-)$1	260	194	234	16.6729
GCUGGAGCCUGGGGUGUCCUACAGUGACUCCCUGGGAGCC	chr14:104164642-104164962(-)$1	320	112	152	16.0646
CGCUCCUGGCUCUACCUGCAUGUGUCCGGUCUAGCCAGGG	chr1:15285145-15285404(+)$1	259	85	125	15.6601
CUCAUGAGGCAUUCCAGGUUAUUCCUGGAAGCUCUCUUGG	chr8:26220403-26220677(+)$1	274	108	148	13.8815
ccugagguuuuCUGUUGGGCCUUCCCUGCCAGGGAACCCA	chr5:149890169-149890417(+)$1	248	82	122	18.6763
UGCCAGGUACCAUUUGCAGAAUGCUGCAGAUGAUAUUUGG	chr1:160194490-160194787(-)$1	297	117	157	21.0113
GAAGGGCGAGGGGUGGCGGGCCUCCCGUCACCCUGCCUUC	chr20:60907744-60908003(-)$1	259	183	223	19.0274
CACUCAGUACACCAUCAGUCACAUCACUCGGUAUACCAuc	chr17:80218026-80218286(-)$1	260	126	166	14.0304
GAUGACUCCUGCAGGCCAGAUGACUCCUGCAGGGGUUAUC	chr18:77894632-77894891(+)$1	259	22	62	21.3630
CCAGGGCCCGGGGGUGCUCUCUGGGUGCUCUCAGGCUCGU	chr17:78081186-78081419(+)$1	233	83	123	16.1304
aacauguaaguccucuggucuuugccagggggcucuaugu	chr14:31467655-31467929(-)$1	274	98	138	19.4651

#DB
((((((((((((((((.((....))..)))))))).))))	chr11:65211887-65212116(+)$1	1	65	105	16.2473
(((((((((((..(((.........)))))))))))))).	chr9:107645062-107645312(-)$1	1	199	239	16.1148
(.(((.(((((((((.(((....)))))))))))).))).	chr20:61540803-61541078(-)$1	1	107	147	18.9944
..((.....((((((((((......)))))))))))).))	chr1:91437466-91437727(-)$1	1	148	188	16.1807
((((((((.(((((..(......)..)))).).)))))))	chr10:77826607-77826860(+)$1	1	106	146	15.8762
((((((((.(((((((.((....)).))))))).))))))	chr17:80890629-80890886(+)$1	1	101	141	19.3703
(((((((((.((....(((....)))....))..))))))	chr6:138728559-138728790(+)$1	1	157	197	16.3528
(((((((((.(..(((((......)))))..).)))))))	chr16:11664126-11664347(-)$1	1	59	99	16.7181
(((((.((((((..(((((....)))))))))))))))))	chrX:20037066-20037332(-)$1	1	102	142	14.4287
((((.(((((((((.(((......))).)).)))))))..	chr19:893459-893690(+)$1	1	175	215	14.5221
))))).))(((((((((......))...)))))))(((((	chr1:156346819-156347064(+)$1	1	30	70	14.7583
(....(((.(((((((.((....)).))))))).)))..)	chr6:16458956-16459173(-)$1	1	100	140	16.5759
(..(.(.(((.((((((((....))))).))).))).).)	chr12:53906017-53906236(-)$1	1	56	96	15.0338
((.(((((((.(((((((......)).))))).)))))))	chr7:158379649-158379878(-)$1	1	98	138	14.0270
.))))))))((((((((((....))))))))))(((((((	chr17:57971093-57971321(+)$1	1	61	101	20.4678
.(((((((..(((((((((....)))))))))..))))))	chr17:62532255-62532510(+)$1	1	66	106	18.2550
.(((.(.((((((((.((((...))))..).))))))).)	chr19:5041766-5042055(+)$1	1	29	69	14.3943
(((.((((((((((((.((....)).)))))))))))).)	chr9:126552926-126553191(-)$1	1	92	132	19.8297
(((((((((((((((((((....)))))))))))))))))	chr4:89689570-89689823(-)$1	1	66	106	22.1076
(.(((((((((..((((((....))))))..)))))))))	chr11:1972988-1973252(+)$1	1	186	226	16.6622
(..(((((.((((((((((....)))..))))))))))))	chr11:66915680-66915938(+)$1	1	99	139	15.9530
..(((((.(((.(((((((....))))))).)))))))).	chr16:83987244-83987510(+)$1	1	106	146	14.8734
.((((.(((((((((((((....)))))))))).))).))	chr17:48830579-48830819(+)$1	1	108	148	17.9878
((((((.(....(((((((......)))))))))))))))	chr20:62318538-62318757(+)$1	1	158	198	16.4401
...(((((((((.((((.(....).)))).))))))))).	chr8:125640613-125640835(-)$1	1	57	97	17.7023
((.((((..(((((((.((....)))))))))..)))).)	chr2:242642260-242642510(+)$1	1	82	122	15.1725
.(((((((...((((((((....))))))))...))))))	chr22:40960763-40961018(-)$1	1	87	127	14.3379
(((((..(((((((((((......)))))))).)))..))	chr9:74361626-74361915(-)$1	1	90	130	14.4424
(..(((((((((.(.((((....))))).)))))))))..	chr9:130888235-130888495(-)$1	1	99	139	17.7266
((((.(((((((((.((((....)))))))))))...)))	chr14:100029601-100029852(-)$1	1	75	115	14.4271
(..(.(.(((.((((((((....))))).))).))).).)	chr12:53906036-53906267(-)$1	1	87	127	15.0338
((((..(((((((((.(((...))).)))))))))..)))	chr12:26914056-26914307(-)$1	1	84	124	17.8718
((((((((((((((((((......))))))))))))))))	chr4:166008371-166008670(-)$1	1	87	127	20.9913
((((((((.(((((((.((....)).))))))))))))))	chr21:47569433-47569644(-)$1	1	92	132	19.4794
)))(((((((((....(((....))))))))))))..(((	chr15:79285826-79286082(-)$1	1	127	167	15.5653
(...((.((.(((((((((....))))))))).)).))))	chr3:38178385-38178652(-)$1	1	153	193	16.1371
((.((.(((((((((((((.....))))))))))))).))	chr14:55169843-55170175(+)$1	1	123	163	17.3451
((((.((..(((((..(((....))).))))).)).).))	chr16:16272769-16273017(-)$1	1	81	121	13.9623
(((((((((((.(((((((....))))))).)))))))..	chr16:55851833-55852083(-)$1	1	81	121	17.1212
(((((((.(((((((((((....))..))))))))).)))	chr11:64073290-64073526(+)$1	1	120	160	19.2210
((((((((((...((((......))))....)))))))))	chr22:19417923-19418183(-)$1	1	194	234	16.6729
((.((..(((((((.((((....).))).)))))))..))	chr14:104164642-104164962(-)$1	1	112	152	16.0646
.((.(((((((..(((.((....))..)))..))))))))	chr1:15285145-15285404(+)$1	1	85	125	15.6601
((((.(((((.(((((((.....))))))))).))).)))	chr8:26220403-26220677(+)$1	1	108	148	13.8815
(.((.(((((((((..(((....)))...)))))))))))	chr5:149890169-149890417(+)$1	1	82	122	18.6763
(((((((((.(((((((((....))))))))).)))))))	chr1:160194490-160194787(-)$1	1	117	157	21.0113
(((((.(..(((((((((((...)))))))))))))))))	chr20:60907744-60908003(-)$1	1	183	223	19.0274
.(((..(((.(((...(((......))).))).)))....	chr17:80218026-80218286(-)$1	1	126	166	14.0304
(((((((((((((((..((....)))))))))))))))))	chr18:77894632-77894891(+)$1	1	22	62	21.3630
.(((((((.((((((((((...)))))))))).))))).)	chr17:78081186-78081419(+)$1	1	83	123	16.1304
.((((((((((((((((((....))))))))))).)))))	chr14:31467655-31467929(-)$1	1	98	138	19.4651

#PSSM
= : 0.19	d : 0.11	i : 0.09	f : 0.09	g : 0.09	c : 0.07	" : 0.05	: : 0.05	e : 0.03	! : 0.03	b : 0.01	o : 0.01	[ : 0.01	# : 0.01	h : 0.01	% : 0.01	
= : 0.17	g : 0.17	i : 0.09	c : 0.09	! : 0.07	[ : 0.05	" : 0.05	f : 0.05	b : 0.05	d : 0.05	# : 0.03	e : 0.01	h : 0.01	
= : 0.17	g : 0.17	i : 0.11	c : 0.07	b : 0.07	! : 0.07	[ : 0.07	f : 0.05	e : 0.03	# : 0.03	d : 0.03	h : 0.01	" : 0.01	
g : 0.19	= : 0.17	i : 0.17	b : 0.07	e : 0.07	c : 0.05	a : 0.05	f : 0.03	[ : 0.03	d : 0.03	# : 0.01	h : 0.01	" : 0.01	
= : 0.19	g : 0.19	i : 0.17	[ : 0.15	e : 0.05	b : 0.05	d : 0.03	! : 0.03	c : 0.01	$ : 0.01	f : 0.01	# : 0.01	
g : 0.19	= : 0.17	i : 0.17	[ : 0.09	! : 0.07	a : 0.05	e : 0.05	b : 0.05	c : 0.03	$ : 0.01	] : 0.01	d : 0.01	
i : 0.21	= : 0.19	g : 0.17	[ : 0.09	c : 0.07	b : 0.05	e : 0.05	! : 0.03	$ : 0.01	f : 0.01	d : 0.01	a : 0.01	
i : 0.21	g : 0.21	= : 0.19	c : 0.13	! : 0.05	b : 0.03	e : 0.03	[ : 0.03	$ : 0.01	f : 0.01	a : 0.01	
i : 0.19	= : 0.17	g : 0.15	[ : 0.11	c : 0.11	! : 0.07	b : 0.03	h : 0.01	$ : 0.01	f : 0.01	a : 0.01	# : 0.01	" : 0.01	
= : 0.25	g : 0.25	i : 0.15	[ : 0.09	c : 0.07	h : 0.01	a : 0.01	f : 0.01	! : 0.01	# : 0.01	" : 0.01	e : 0.01	b : 0.01	
= : 0.23	g : 0.23	i : 0.21	[ : 0.07	h : 0.03	c : 0.03	" : 0.03	d : 0.01	b : 0.01	a : 0.01	f : 0.01	# : 0.01	e : 0.01	
= : 0.21	g : 0.21	i : 0.19	! : 0.07	h : 0.05	c : 0.05	e : 0.03	[ : 0.03	d : 0.01	b : 0.01	f : 0.01	# : 0.01	" : 0.01	
g : 0.25	= : 0.21	i : 0.13	! : 0.09	h : 0.05	c : 0.05	# : 0.03	e : 0.03	[ : 0.03	d : 0.01	b : 0.01	" : 0.01	
g : 0.25	= : 0.21	i : 0.13	c : 0.07	h : 0.05	d : 0.05	e : 0.05	# : 0.03	! : 0.01	b : 0.01	f : 0.01	a : 0.01	" : 0.01	
= : 0.21	g : 0.19	i : 0.11	e : 0.09	[ : 0.07	h : 0.05	! : 0.05	c : 0.03	# : 0.03	d : 0.03	a : 0.01	f : 0.01	" : 0.01	
= : 0.19	g : 0.17	e : 0.09	c : 0.07	! : 0.07	i : 0.07	d : 0.07	h : 0.05	[ : 0.05	# : 0.03	b : 0.01	f : 0.01	" : 0.01	
c : 0.19	= : 0.17	[ : 0.13	d : 0.09	e : 0.07	i : 0.07	g : 0.07	b : 0.03	h : 0.03	r : 0.01	a : 0.01	f : 0.01	! : 0.01	
b : 0.19	c : 0.19	= : 0.17	e : 0.07	g : 0.07	o : 0.05	i : 0.05	d : 0.05	h : 0.03	r : 0.01	f : 0.01	[ : 0.01	
b : 0.17	c : 0.15	= : 0.15	o : 0.15	e : 0.05	i : 0.05	d : 0.05	g : 0.05	a : 0.03	r : 0.01	f : 0.01	h : 0.01	n : 0.01	
m : 0.64	o : 0.21	l : 0.03	n : 0.03	r : 0.01	d : 0.01	= : 0.01	
m : 0.64	o : 0.21	l : 0.07	n : 0.03	r : 0.01	
m : 0.64	o : 0.21	l : 0.07	n : 0.03	r : 0.01	
m : 0.64	o : 0.21	l : 0.03	n : 0.03	r : 0.01	c : 0.01	= : 0.01	
b : 0.19	o : 0.15	c : 0.13	= : 0.11	d : 0.07	a : 0.05	e : 0.05	i : 0.05	g : 0.05	r : 0.01	f : 0.01	h : 0.01	n : 0.01	
b : 0.21	c : 0.15	= : 0.15	e : 0.07	d : 0.07	o : 0.05	i : 0.05	g : 0.05	] : 0.03	h : 0.03	r : 0.01	2 : 0.01	f : 0.01	
c : 0.19	= : 0.19	] : 0.09	d : 0.09	g : 0.09	2 : 0.07	e : 0.07	i : 0.05	h : 0.03	3 : 0.01	b : 0.01	f : 0.01	
= : 0.21	g : 0.15	i : 0.11	d : 0.11	2 : 0.07	c : 0.07	e : 0.07	3 : 0.03	] : 0.03	h : 0.03	4 : 0.01	f : 0.01	
= : 0.21	g : 0.17	i : 0.13	e : 0.11	c : 0.07	h : 0.05	d : 0.03	4 : 0.03	3 : 0.03	2 : 0.03	] : 0.01	f : 0.01	a : 0.01	
= : 0.23	g : 0.21	i : 0.13	] : 0.09	h : 0.05	e : 0.05	d : 0.03	4 : 0.03	f : 0.03	b : 0.01	2 : 0.01	c : 0.01	3 : 0.01	
= : 0.23	g : 0.23	i : 0.17	c : 0.07	h : 0.05	4 : 0.03	2 : 0.03	e : 0.03	d : 0.01	f : 0.01	b : 0.01	a : 0.01	] : 0.01	
= : 0.23	i : 0.19	g : 0.17	] : 0.09	h : 0.05	2 : 0.05	c : 0.05	b : 0.03	e : 0.03	f : 0.01	4 : 0.01	
= : 0.25	g : 0.23	i : 0.21	c : 0.07	h : 0.03	a : 0.03	b : 0.03	e : 0.03	f : 0.01	3 : 0.01	2 : 0.01	
= : 0.23	] : 0.23	g : 0.21	i : 0.15	2 : 0.05	h : 0.01	f : 0.01	c : 0.01	a : 0.01	3 : 0.01	
= : 0.23	i : 0.21	g : 0.19	c : 0.11	] : 0.05	2 : 0.05	b : 0.03	h : 0.01	f : 0.01	3 : 0.01	e : 0.01	
i : 0.27	g : 0.21	= : 0.19	c : 0.13	e : 0.03	b : 0.03	h : 0.01	d : 0.01	3 : 0.01	a : 0.01	] : 0.01	
i : 0.23	g : 0.21	= : 0.17	c : 0.13	] : 0.07	e : 0.05	b : 0.01	d : 0.01	3 : 0.01	2 : 0.01	: : 0.01	
i : 0.21	= : 0.19	g : 0.19	] : 0.07	c : 0.05	e : 0.05	2 : 0.05	b : 0.03	d : 0.01	3 : 0.01	: : 0.01	a : 0.01	4 : 0.01	
g : 0.25	i : 0.21	= : 0.17	] : 0.07	2 : 0.05	e : 0.05	a : 0.03	d : 0.03	b : 0.03	c : 0.01	4 : 0.01	
g : 0.19	= : 0.17	i : 0.17	] : 0.11	2 : 0.07	b : 0.07	e : 0.05	d : 0.05	c : 0.03	4 : 0.01	
g : 0.17	= : 0.15	i : 0.15	b : 0.09	2 : 0.07	d : 0.07	e : 0.05	a : 0.05	] : 0.03	c : 0.03	3 : 0.01	h : 0.01	4 : 0.01	

#score	860.6939807279241
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF834BGX_RPS3_transcript_m2_run2.txt

#BEAR
bccc[eeeeeqqqqqqqqeeeee]	chr12:120876081-120876303(+)$1	222	104	128	16.3434
eeee[eeeeeqqqqqqqqeeeee]	chrX:77372707-77372937(+)$1	230	131	155	16.3482
hhhhhhddddqqqqqqqqdddd]h	chr19:18685620-18685853(+)$1	233	192	216	14.8331
gggggggcccqqqqqqqqccc666	chr6:31785251-31785545(+)$1	294	180	204	14.8213
ffff[eeeeeqqqqqqqqeeeee]	chr19:13049846-13050053(+)$1	207	79	103	16.0588
ccc[a[ddddqqqqqqqqdddd]a	chr9:35062199-35062448(-)$1	249	50	74	16.6564
ddddccccccqqqqqqqqccc22c	chr8:146017289-146017532(-)$1	243	126	150	15.1920
ccc"""ddddqqqqqqqqdddd33	chr10:75868716-75868958(+)$1	242	69	93	17.3602
ee"""eeeeeqqqqqqqqeeeee4	chr19:36149445-36149724(+)$1	279	208	232	16.6237
eeeee[bb[aqqqqqqqqa]bbee	chr17:57697184-57697407(+)$1	223	129	153	13.7690
c!!ccc[cccqqqqqqqqccc]cc	chr17:26901411-26901620(-)$1	209	67	91	15.9885
ffff!!ddddqqqqqqqqddddff	chrX:118603861-118604088(+)$1	227	169	193	16.0771
ggggggg[bbqqqqqqqqbb]ggg	chr1:40525008-40525229(+)$1	221	76	100	14.4363
:ccc!!ddddqqqqqqqqdddd]c	chr11:5274426-5274687(-)$1	261	210	234	15.9989
ee[ccc!!bbqqqqqqqqbb]ccc	chr6:27835145-27835395(-)$1	250	215	239	14.5402
eeee"""cccqqqqqqqqccc333	chr1:160264210-160264441(-)$1	231	30	54	16.9308
#ccc[eeeeeqqqqqqqqeeeee]	chr11:760024-760280(+)$1	256	199	223	16.4785
ddd!!eeeeeqqqqqqqqeeeee2	chr6:170846221-170846496(-)$1	275	181	205	16.2548
ddd[a[ddddqqqqqqqqdddda]	chr17:72199719-72199963(+)$1	244	11	35	16.4593
eeeee[ddddqqqqqqqqddddee	chr5:10288462-10288725(-)$1	263	202	226	16.0377
cc[bb[ddddqqqqqqqqdddd22	chr1:26232786-26232995(-)$1	209	179	203	16.0937
+ccc[eeeeeqqqqqqqqeeeee]	chr6:35436650-35436883(+)$1	233	118	142	15.9390
bb"""eeeeeqqqqqqqqeeeee4	chr19:40957173-40957496(-)$1	323	268	292	16.2546
e$$$$$ddddqqqqqqqqdddd44	chr17:5336570-5336827(-)$1	257	59	83	15.9673
ffff[eeeeeqqqqqqqqeeeee]	chr1:24021155-24021381(+)$1	226	145	169	16.0588
dd[a[eeeeeqqqqqqqqeeeeea	chr1:151372080-151372304(+)$1	224	98	122	16.2140
e]ddddddddqqqqqqqqddddbb	chr7:5568160-5568410(-)$1	250	191	215	14.6725
eeee[eeeeeqqqqqqqqeeeee]	chr9:75774143-75774389(+)$1	246	101	125	16.3482
eee"""ddddqqqqqqqqdddd33	chr19:12907693-12907993(-)$1	300	244	268	17.2808
fffffeeeeeqqqqqqqqeeeee2	chr11:18428562-18428793(+)$1	231	111	135	15.5241
dd!!bb[cccqqqqqqqqccc]bb	chr11:5290768-5290996(-)$1	228	71	95	14.9368
b!!gggggggqqqqqqqqgggggg	chr1:156107403-156107686(+)$1	283	98	122	15.1926
:eeeee[cccqqqqqqqqccc]ee	chr18:47018732-47018946(-)$1	214	51	75	14.8805
cccgggggggqqqqqqqqgggggg	chr4:109571720-109572049(+)$1	329	208	232	15.2035
[bb####cccqqqqqqqqccc333	chr6:31703938-31704149(-)$1	211	13	37	16.5140
ffccc!!cccqqqqqqqqccc22c	chr11:62396578-62396800(-)$1	222	69	93	15.9088
:bb"""ddddqqqqqqqqdddd33	chr19:39116588-39116833(+)$1	245	39	63	16.0055
##ccc[ddddqqqqqqqqdddd]c	chr16:3715873-3716119(-)$1	246	26	50	16.3955
""eeeee[bbqqqqqqqqbb]eee	chr7:97486017-97486229(-)$1	212	107	131	14.3808
[ccc!!ddddqqqqqqqqddddcc	chr10:51582764-51583011(+)$1	247	8	32	16.6600
Fccc!!ddddqqqqqqqqdddd33	chr1:36752282-36752532(+)$1	250	148	172	16.9279
=!!bb"""bbqqqqqqqqbb4444	chr14:50050242-50050494(-)$1	252	133	157	14.9156
e"""ffffffqqqqqqqqffffff	chr1:32503333-32503578(+)$1	245	75	99	14.1320
####ffffffqqqqqqqqffffff	chr9:86594976-86595215(-)$1	239	13	37	13.9943
d[bb"""cccqqqqqqqqccc]bb	chr11:111958480-111958704(+)$1	224	148	172	15.2840
[ffffff!!aqqqqqqqqa22fff	chr1:207925499-207925757(+)$1	258	132	156	13.7845
!!dddd"""aqqqqqqqqa4444d	chr15:72492800-72493051(-)$1	251	18	42	14.7772
gggggg[cccqqqqqqqqcccggg	chr17:16285245-16285495(+)$1	250	105	129	15.8761
eeeebbddddqqqqqqqqdddd]b	chr16:21991782-21992107(+)$1	325	235	259	15.3061
[dddd!!cccqqqqqqqqccc333	chr1:120279671-120279933(+)$1	262	90	114	16.4706
iiiiiiicccqqqqqqqqccc888	chr8:145152141-145152389(+)$1	248	131	155	14.9822
==========qqqqqqqq======	chr12:57627450-57627722(+)$1	272	18	42	15.8103
eeeeeeeeeeqqqqqqqqeeeee:	chr6:32148004-32148251(+)$1	247	34	58	14.9282
c[dddd!!bbqqqqqqqqbbdddd	chr2:97544052-97544286(-)$1	234	67	91	14.1092
Ceeeee[cccqqqqqqqqccceee	chr1:113498640-113498926(-)$1	286	181	205	14.8291
dddd[ccc[aqqqqqqqqacccdd	chr19:59060769-59060992(+)$1	223	188	212	14.9787
bb####ddddqqqqqqqqdddd22	chr15:45007520-45007729(+)$1	209	125	149	16.3462
dd[a"""cccqqqqqqqqccc]ad	chr11:75115676-75115924(+)$1	248	88	112	16.1972
bbccceeeeeqqqqqqqqeeeee]	chr11:73692420-73692669(-)$1	249	131	155	15.7992

#otherMatches

#Seq PSSM
CAUGUGGAAGACUCUCACCUUCUU	chr12:120876081-120876303(+)$1	222	104	128	16.3434
UUCCGAGCUUCACUUUCCAAGCUA	chrX:77372707-77372937(+)$1	230	131	155	16.3482
GGGGGCUGCCGGAGUCGGGGUAUG	chr19:18685620-18685853(+)$1	233	192	216	14.8331
AGGCCCCACCAUUGAGGAGGUAGA	chr6:31785251-31785545(+)$1	294	180	204	14.8213
ACCCCUCUAAUCCCCCACUUAGAC	chr19:13049846-13050053(+)$1	207	79	103	16.0588
AAUUGGGAAAGACUAUCAUUUUGU	chr9:35062199-35062448(-)$1	249	50	74	16.6564
CGGCACGGCUACAUCAAGGGCAUC	chr8:146017289-146017532(-)$1	243	126	150	15.1920
CCUAGGCCUCCACCACCAGAGGAA	chr10:75868716-75868958(+)$1	242	69	93	17.3602
ACCUGCUAAUAAAAACUCAUUGGA	chr19:36149445-36149724(+)$1	279	208	232	16.6237
ggagccuccgcccccgacccgagc	chr17:57697184-57697407(+)$1	223	129	153	13.7690
GGAGACCACGACCUCAAACGUUGU	chr17:26901411-26901620(-)$1	209	67	91	15.9885
GUACCAAGGCUUUAACGUGUCUGU	chrX:118603861-118604088(+)$1	227	169	193	16.0771
CAUACCUCUGACAUGCACCGUGGG	chr1:40525008-40525229(+)$1	221	76	100	14.4363
GGAUAGGCUUUAUUCUGCAAGCAA	chr11:5274426-5274687(-)$1	261	210	234	15.9989
UCUCAGAGCUGAUCACCAAGGCUG	chr6:27835145-27835395(-)$1	250	215	239	14.5402
CUGUUUUGAGCUUGAAUUUUCCUU	chr1:160264210-160264441(-)$1	231	30	54	16.9308
AUCAACCUGGGAAGGAAUUCAGGC	chr11:760024-760280(+)$1	256	199	223	16.4785
AUACUGUGUCCAGGUAAUGAUACU	chr6:170846221-170846496(-)$1	275	181	205	16.2548
CCUACAUGAGUCUUGAUCCUCGGC	chr17:72199719-72199963(+)$1	244	11	35	16.4593
CGCAGACGUGGCCAUGUGCACGUU	chr5:10288462-10288725(-)$1	263	202	226	16.0377
GGAGGGGCUGGGCCGUGGCAGCGA	chr1:26232786-26232995(-)$1	209	179	203	16.0937
UCCCCAGAAGGACAAGCGCUUCUC	chr6:35436650-35436883(+)$1	233	118	142	15.9390
GUUCCCUCCUGCCCUCUGGGGAGA	chr19:40957173-40957496(-)$1	323	268	292	16.2546
ACCCUUCAGUUUCCCAAUAUUGUU	chr17:5336570-5336827(-)$1	257	59	83	15.9673
UCCCGCUCCUGGUCUGUGAGGAGA	chr1:24021155-24021381(+)$1	226	145	169	16.0588
ACAGAGGUCCAAUCACGCGGACCC	chr1:151372080-151372304(+)$1	224	98	122	16.2140
CUACGAGGGGUAUGCCCUCCCCCA	chr7:5568160-5568410(-)$1	250	191	215	14.6725
GUGUGGAUGAAGCAACCAUCAUUG	chr9:75774143-75774389(+)$1	246	101	125	16.3482
AGGCCAAGGCCUUCUCAUGCCUCC	chr19:12907693-12907993(-)$1	300	244	268	17.2808
GAAUAAAGGAUGAUGUCUUCCUUA	chr11:18428562-18428793(+)$1	231	111	135	15.5241
AUAUGGUGUCAUUUCAUAGACUCC	chr11:5290768-5290996(-)$1	228	71	95	14.9368
GAGGAUGGAGAUGACCUGCUCCAU	chr1:156107403-156107686(+)$1	283	98	122	15.1926
CGAGAAGUCAAGUUCUCAUGAGUU	chr18:47018732-47018946(-)$1	214	51	75	14.8805
UCUUACUUCCUCAUCACCGGAGGU	chr4:109571720-109572049(+)$1	329	208	232	15.2035
CGGUCCCAGCCCCUCCCAGUUCCC	chr6:31703938-31704149(-)$1	211	13	37	16.5140
ACCAUUUGAAGAUCUCUAUUCCUA	chr11:62396578-62396800(-)$1	222	69	93	15.9088
CGCUCCGAGGCCAGUUUUCCUUAA	chr19:39116588-39116833(+)$1	245	39	63	16.0055
GGCUGAUCAAAUUCUUCAUUGACC	chr16:3715873-3716119(-)$1	246	26	50	16.3955
GAUCAUAUUGGAAGUGAACAUUAU	chr7:97486017-97486229(-)$1	212	107	131	14.3808
AUUCCUUGUUUUGUGAUUAACAGA	chr10:51582764-51583011(+)$1	247	8	32	16.6600
GGCCAAGGAGCAGACAUUCUCUGG	chr1:36752282-36752532(+)$1	250	148	172	16.9279
CCGGGGCAUCUACUCAAUGAAAAA	chr14:50050242-50050494(-)$1	252	133	157	14.9156
CAUUUAAGAUAAACUUUCAUUUUG	chr1:32503333-32503578(+)$1	245	75	99	14.1320
UGAAGCCCUGGCAGCCAAUAGGGC	chr9:86594976-86595215(-)$1	239	13	37	13.9943
UUCUUCAGGACCGACCUAUCCCAG	chr11:111958480-111958704(+)$1	224	148	172	15.2840
GUUGCUGCUGUACUCCUUCUCCGG	chr1:207925499-207925757(+)$1	258	132	156	13.7845
UAAUGGUCUCUUCUGUAUGUCCCC	chr15:72492800-72493051(-)$1	251	18	42	14.7772
AUCUUUGCAGGCAAGCAGCUGGAA	chr17:16285245-16285495(+)$1	250	105	129	15.8761
AAAUGUAAGUAAAUGAAAACUUAA	chr16:21991782-21992107(+)$1	325	235	259	15.3061
UGGACCAUGAGAAUGUCAUCAGCU	chr1:120279671-120279933(+)$1	262	90	114	16.4706
ACAGGCCCUCAAGCCCAAGAGCCA	chr8:145152141-145152389(+)$1	248	131	155	14.9822
GGGCCUCUGUAGCUUCAGGCAGAG	chr12:57627450-57627722(+)$1	272	18	42	15.8103
GCUGGCAGGAUUCCCUCUUCCUGU	chr6:32148004-32148251(+)$1	247	34	58	14.9282
GUGCCACAGCUUGCUGAUGCUGGC	chr2:97544052-97544286(-)$1	234	67	91	14.1092
GACGGGAGCCGGACCCUGGGCCCC	chr1:113498640-113498926(-)$1	286	181	205	14.8291
CCAGUGUGAGUUUUGUUUCCACCU	chr19:59060769-59060992(+)$1	223	188	212	14.9787
ACGUCAUCCAGCAGAGAAUGGAAA	chr15:45007520-45007729(+)$1	209	125	149	16.3462
UAAGAUUGGCCCUAAGAAGCCCCU	chr11:75115676-75115924(+)$1	248	88	112	16.1972
GAGACCUUACAAAGCCGGGUAAGA	chr11:73692420-73692669(-)$1	249	131	155	15.7992

#DB
((((.(((((........))))).	chr12:120876081-120876303(+)$1	1	104	128	16.3434
((((.(((((........))))).	chrX:77372707-77372937(+)$1	1	131	155	16.3482
((((((((((........)))).)	chr19:18685620-18685853(+)$1	1	192	216	14.8331
((((((((((........)))...	chr6:31785251-31785545(+)$1	1	180	204	14.8213
((((.(((((........))))).	chr19:13049846-13050053(+)$1	1	79	103	16.0588
(((.(.((((........)))).)	chr9:35062199-35062448(-)$1	1	50	74	16.6564
))))((((((........)))..)	chr8:146017289-146017532(-)$1	1	126	150	15.1920
(((...((((........))))..	chr10:75868716-75868958(+)$1	1	69	93	17.3602
((...(((((........))))).	chr19:36149445-36149724(+)$1	1	208	232	16.6237
(((((.((.(........).))))	chr17:57697184-57697407(+)$1	1	129	153	13.7690
(..(((.(((........))).))	chr17:26901411-26901620(-)$1	1	67	91	15.9885
((((..((((........))))))	chrX:118603861-118604088(+)$1	1	169	193	16.0771
(((((((.((........)).)))	chr1:40525008-40525229(+)$1	1	76	100	14.4363
.(((..((((........)))).)	chr11:5274426-5274687(-)$1	1	210	234	15.9989
((.(((..((........)).)))	chr6:27835145-27835395(-)$1	1	215	239	14.5402
((((...(((........)))...	chr1:160264210-160264441(-)$1	1	30	54	16.9308
.(((.(((((........))))).	chr11:760024-760280(+)$1	1	199	223	16.4785
(((..(((((........))))).	chr6:170846221-170846496(-)$1	1	181	205	16.2548
(((.(.((((........))))).	chr17:72199719-72199963(+)$1	1	11	35	16.4593
(((((.((((........))))))	chr5:10288462-10288725(-)$1	1	202	226	16.0377
((.((.((((........))))..	chr1:26232786-26232995(-)$1	1	179	203	16.0937
.(((.(((((........))))).	chr6:35436650-35436883(+)$1	1	118	142	15.9390
((...(((((........))))).	chr19:40957173-40957496(-)$1	1	268	292	16.2546
(.....((((........))))..	chr17:5336570-5336827(-)$1	1	59	83	15.9673
((((.(((((........))))).	chr1:24021155-24021381(+)$1	1	145	169	16.0588
((.(.(((((........))))))	chr1:151372080-151372304(+)$1	1	98	122	16.2140
).))))((((........))))((	chr7:5568160-5568410(-)$1	1	191	215	14.6725
((((.(((((........))))).	chr9:75774143-75774389(+)$1	1	101	125	16.3482
(((...((((........))))..	chr19:12907693-12907993(-)$1	1	244	268	17.2808
((((((((((........))))).	chr11:18428562-18428793(+)$1	1	111	135	15.5241
((..((.(((........))).))	chr11:5290768-5290996(-)$1	1	71	95	14.9368
(..(((((((........))))))	chr1:156107403-156107686(+)$1	1	98	122	15.1926
.(((((.(((........))).))	chr18:47018732-47018946(-)$1	1	51	75	14.8805
)))(((((((........))))))	chr4:109571720-109572049(+)$1	1	208	232	15.2035
.((....(((........)))...	chr6:31703938-31704149(-)$1	1	13	37	16.5140
(((((..(((........)))..)	chr11:62396578-62396800(-)$1	1	69	93	15.9088
.((...((((........))))..	chr19:39116588-39116833(+)$1	1	39	63	16.0055
..(((.((((........)))).)	chr16:3715873-3716119(-)$1	1	26	50	16.3955
..(((((.((........)).)))	chr7:97486017-97486229(-)$1	1	107	131	14.3808
.(((..((((........))))))	chr10:51582764-51583011(+)$1	1	8	32	16.6600
)(((..((((........))))..	chr1:36752282-36752532(+)$1	1	148	172	16.9279
(..((...((........))....	chr14:50050242-50050494(-)$1	1	133	157	14.9156
(...((((((........))))))	chr1:32503333-32503578(+)$1	1	75	99	14.1320
....((((((........))))))	chr9:86594976-86595215(-)$1	1	13	37	13.9943
(.((...(((........))).))	chr11:111958480-111958704(+)$1	1	148	172	15.2840
.((((((..(........)..)))	chr1:207925499-207925757(+)$1	1	132	156	13.7845
..((((...(........)....)	chr15:72492800-72493051(-)$1	1	18	42	14.7772
((((((.(((........))))))	chr17:16285245-16285495(+)$1	1	105	129	15.8761
((((((((((........)))).)	chr16:21991782-21992107(+)$1	1	235	259	15.3061
.((((..(((........)))...	chr1:120279671-120279933(+)$1	1	90	114	16.4706
((((((((((........)))...	chr8:145152141-145152389(+)$1	1	131	155	14.9822
((((((((((........))))))	chr12:57627450-57627722(+)$1	1	18	42	15.8103
)))))(((((........))))).	chr6:32148004-32148251(+)$1	1	34	58	14.9282
(.((((..((........))))))	chr2:97544052-97544286(-)$1	1	67	91	14.1092
((((((.(((........))))))	chr1:113498640-113498926(-)$1	1	181	205	14.8291
((((.(((.(........))))))	chr19:59060769-59060992(+)$1	1	188	212	14.9787
((....((((........))))..	chr15:45007520-45007729(+)$1	1	125	149	16.3462
((.(...(((........))).))	chr11:75115676-75115924(+)$1	1	88	112	16.1972
((((((((((........))))).	chr11:73692420-73692669(-)$1	1	131	155	15.7992

#PSSM
e : 0.22	d : 0.13	c : 0.10	b : 0.08	f : 0.08	[ : 0.06	g : 0.05	: : 0.05	# : 0.05	= : 0.03	h : 0.01	+ : 0.01	" : 0.01	F : 0.01	! : 0.01	i : 0.01	C : 0.01	
e : 0.20	c : 0.16	d : 0.13	f : 0.10	b : 0.08	! : 0.06	g : 0.05	# : 0.03	" : 0.03	[ : 0.03	h : 0.01	$ : 0.01	] : 0.01	i : 0.01	= : 0.01	
c : 0.20	e : 0.18	d : 0.13	f : 0.08	! : 0.06	[ : 0.06	g : 0.05	" : 0.05	b : 0.05	# : 0.03	h : 0.01	$ : 0.01	i : 0.01	= : 0.01	
c : 0.18	e : 0.16	d : 0.10	" : 0.10	g : 0.08	f : 0.08	b : 0.05	# : 0.05	[ : 0.03	! : 0.03	a : 0.03	h : 0.01	$ : 0.01	i : 0.01	= : 0.01	
[ : 0.15	" : 0.13	c : 0.10	e : 0.10	g : 0.08	! : 0.08	b : 0.06	d : 0.06	f : 0.06	a : 0.03	# : 0.03	h : 0.01	$ : 0.01	i : 0.01	= : 0.01	
e : 0.28	" : 0.11	[ : 0.10	! : 0.10	g : 0.08	c : 0.06	d : 0.05	f : 0.05	b : 0.03	# : 0.03	h : 0.01	$ : 0.01	i : 0.01	= : 0.01	
d : 0.28	e : 0.25	[ : 0.08	" : 0.08	g : 0.06	! : 0.06	f : 0.05	c : 0.03	b : 0.01	# : 0.01	i : 0.01	= : 0.01	
d : 0.28	c : 0.25	e : 0.23	! : 0.05	[ : 0.03	g : 0.03	" : 0.03	f : 0.03	b : 0.01	= : 0.01	
d : 0.28	e : 0.23	c : 0.23	b : 0.08	[ : 0.03	g : 0.03	f : 0.03	! : 0.01	" : 0.01	= : 0.01	
d : 0.28	e : 0.23	c : 0.23	b : 0.08	a : 0.06	g : 0.03	f : 0.03	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.28	e : 0.23	c : 0.23	b : 0.08	a : 0.06	g : 0.03	f : 0.03	= : 0.01	
d : 0.28	c : 0.25	e : 0.23	b : 0.08	g : 0.03	f : 0.03	] : 0.01	2 : 0.01	4 : 0.01	= : 0.01	
d : 0.30	c : 0.25	e : 0.23	] : 0.05	g : 0.03	4 : 0.03	f : 0.03	b : 0.01	2 : 0.01	= : 0.01	
d : 0.30	e : 0.27	] : 0.08	g : 0.06	3 : 0.05	f : 0.05	2 : 0.03	c : 0.03	4 : 0.03	6 : 0.01	b : 0.01	8 : 0.01	= : 0.01	
e : 0.32	3 : 0.11	] : 0.08	2 : 0.06	f : 0.06	g : 0.06	c : 0.05	4 : 0.05	b : 0.05	a : 0.03	d : 0.03	6 : 0.01	8 : 0.01	= : 0.01	
] : 0.15	c : 0.11	3 : 0.11	e : 0.08	4 : 0.06	f : 0.06	g : 0.06	2 : 0.06	b : 0.06	d : 0.06	a : 0.03	h : 0.01	6 : 0.01	8 : 0.01	= : 0.01	: : 0.01	

#score	923.0907705754906
#seq	59
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_UTR_m3_run2.txt

#BEAR
C==========nnnnn==========	chr10:38407909-38408195(+)$1	286	222	248	10.3162
ccc"""a!!cccmmmmccc22a4444	chr1:46073068-46073296(+)$1	228	71	97	9.1307
ggggggg[ccclllccc333gggggg	chr10:38410951-38411223(+)$1	272	0	26	9.3532
bb[bb[eeeeeooooooeeeeebb]b	chr6:111694126-111694442(-)$1	316	224	250	10.0099
============mmmm==========	chr10:43084679-43085048(-)$1	369	54	80	11.1460
:::ccc!!cccooooooccc22ccce	chr8:59473933-59474219(+)$1	286	170	196	10.4393
gdddd[bbcccooooooccc22bb33	chr1:155451356-155451640(-)$1	284	220	246	11.5885
iiiii!!ddddoooooodddd]iiii	chr8:91018065-91018366(+)$1	301	116	142	13.0785
fffff"""cccoooooocccffffff	chr15:40913962-40914228(+)$1	266	179	205	11.6252
ggiiiiiiiiiooooooiiiiiiiii	chr4:761223-761500(-)$1	277	110	136	13.9714
=======!!cccmmmmccc]======	chr2:101624056-101624371(+)$1	315	42	68	10.7978
[eeeee!!cccooooooccc22eeee	chr5:112177766-112178081(+)$1	315	49	75	12.1669
iiiiiiiirrrrrrrrriiiiiiiii	chr3:40577141-40577408(+)$1	267	82	108	9.9520
ddiiiiiiiiiooooooiiiiiiiii	chr4:761155-761423(-)$1	268	33	59	13.6759
$$$ddddddddoooooodddd]dddd	chr2:109087823-109088099(+)$1	276	186	212	10.1238
iiiiiiiiiccclllccc]iiiiiii	chr12:54396516-54396819(+)$1	303	175	201	10.3637
%%iiiiiiiiinnnnniiiiiiiii3	chrX:106309747-106310031(-)$1	284	45	71	9.4901
hhhccc[ddddoooooodddd333cc	chr17:58326922-58327203(-)$1	281	170	196	11.6986
ggggggcccrrrrrrrrrccc]gggg	chr3:49057705-49058041(-)$1	336	74	100	8.9930
iiiiiiiirrrrrrrrriiiiiiiii	chr3:40577044-40577326(+)$1	282	179	205	9.9520
::iiiiiiiiiooooooiiiiiiiii	chr19:58772383-58772637(+)$1	254	162	188	12.4300
iii:gggggggooooooggggggg::	chr7:44923009-44923317(-)$1	308	239	265	9.7346
###==========lll==========	chr6:111694880-111695209(-)$1	329	228	254	11.7567
##ccc[eeeeeooooooeeeee]ccc	chr10:129897179-129897480(-)$1	301	48	74	11.6394
eeeee[ccc[aooooooaccceeeee	chr1:203766418-203766703(+)$1	285	5	31	11.2830
ggggggg[cccrrrrrrrrrcccggg	chrX:106309633-106309893(-)$1	260	95	121	8.9578
::iiiiiiiiiooooooiiiiiiiii	chr6:64422239-64422514(+)$1	275	143	169	12.4300
ggggggg!!cccmmmmccc22ggggg	chr15:40914291-40914596(+)$1	305	277	303	9.3263
###eeeeecccooooooccc]eeeee	chr4:760050-760303(-)$1	253	29	55	12.0252
a[a!!a[ddddoooooodddd]a22a	chr17:43225832-43226100(+)$1	268	226	252	11.9084
::dddd"""bboooooobb333dddd	chr2:109087048-109087306(+)$1	258	18	44	9.2915
##ggggggg[aooooooa]ggggggg	chr4:759929-760202(-)$1	273	39	65	13.0266
!!ccc"""ddddmmmmdddd333ccc	chr6:111694048-111694310(-)$1	262	170	196	8.8332
=======[cccooooooccc======	chr1:92853100-92853521(+)$1	421	329	355	14.8377
Cccc!!eeeeeooooooeeeee]ccc	chr21:39469258-39469496(-)$1	238	18	44	10.5721
[a"""bb[cccooooooccc]bb333	chr1:203769306-203769566(+)$1	260	212	238	13.0251
ddddddddcccooooooccc4444dd	chr6:147613311-147613583(+)$1	272	145	171	11.2507
::a[ccc!!bboooooobb22ccc]a	chr1:67724667-67724962(+)$1	295	164	190	10.1955
eeeee"""ccc[allla]ccceeeee	chr13:108518857-108519174(-)$1	317	188	214	8.7649
!a[gggggggaooooooa]ggggggg	chr19:41770836-41771103(+)$1	267	47	73	13.2012
dd[ffffffbboooooobb]ffffff	chr3:121415970-121416260(-)$1	290	178	204	9.7569
fff!!ccc[bboooooobb]ccc]ff	chr6:3270301-3270562(+)$1	261	19	45	10.8322
!a[ccc[ddddoooooodddd]ccca	chr10:38409721-38410032(+)$1	311	22	48	12.4360
ccc[gggggggooooooggggggg22	chrX:106309991-106310251(-)$1	260	70	96	12.4779
==========oooooo==========	chr18:9255272-9255515(+)$1	243	69	95	13.8252
cc[ccceeeeeooooooeeeee]ccc	chr4:761642-761885(-)$1	243	56	82	11.4587
eeee[bbddddoooooodddd]bb33	chr3:15084401-15084659(-)$1	258	199	225	10.8804
dd[ccc[ddddoooooodddd4444c	chr1:203768747-203768965(+)$1	218	57	83	11.9246
ccc"""a!!cccmmmmccc22a4444	chr1:46073041-46073268(+)$1	227	98	124	9.1307
[a"""bb[cccooooooccc]bb333	chr1:203769420-203769659(+)$1	239	98	124	13.0251

#otherMatches

#Seq PSSM
CACACUUGGAGAAACCUUUUGGGUGU	chr10:38407909-38408195(+)$1	286	222	248	10.3162
UGGAUAUAAGUAAAUCUGCAGAGGAG	chr1:46073068-46073296(+)$1	228	71	97	9.1307
gcucaggaguuugagaccagccuggg	chr10:38410951-38411223(+)$1	272	0	26	9.3532
UUCAGUAAGCAAAGAAGUGUUUCUUA	chr6:111694126-111694442(-)$1	316	224	250	10.0099
auguuguaugauugcaauuauaugac	chr10:43084679-43085048(-)$1	369	54	80	11.1460
agaagugggaugauauagucaaacug	chr8:59473933-59474219(+)$1	286	170	196	10.4393
CAGGUCUGAUCAGUAAAGAUGCCAUA	chr1:155451356-155451640(-)$1	284	220	246	11.5885
gaggguguugggaggugccagguucu	chr8:91018065-91018366(+)$1	301	116	142	13.0785
UGAUAGAAAGACUGAACUCUUAUCAG	chr15:40913962-40914228(+)$1	266	179	205	11.6252
AGCUGCUUUUUAUCUAAAGGAAGCAG	chr4:761223-761500(-)$1	277	110	136	13.9714
UUCUCAAUACAUAGAAAUGCUUGAGG	chr2:101624056-101624371(+)$1	315	42	68	10.7978
AUUGGAAACUAAAAAGAUAGAAUCUG	chr5:112177766-112178081(+)$1	315	49	75	12.1669
cugaaaauggggaagggauuuucaga	chr3:40577141-40577408(+)$1	267	82	108	9.9520
AGCUGCUUUUUAUCUAAAGGAAGCAG	chr4:761155-761423(-)$1	268	33	59	13.6759
AUAAACUGCUUGAAAAUGAGCAAGUU	chr2:109087823-109088099(+)$1	276	186	212	10.1238
GGGGAGAGAAACUGCGUUCUCUUUCC	chr12:54396516-54396819(+)$1	303	175	201	10.3637
AAGCGUUCUCUAGAAAAGAGGAUGCC	chrX:106309747-106310031(-)$1	284	45	71	9.4901
aagugugugguaauuuaaccaggagc	chr17:58326922-58327203(-)$1	281	170	196	11.6986
GCGCCCUCAGGCUGGAGGUGAUGGGU	chr3:49057705-49058041(-)$1	336	74	100	8.9930
cugaaaauggggaagggauuuucaga	chr3:40577044-40577326(+)$1	282	179	205	9.9520
AAAGAGUUGAAACAAAAUUCAGCUUU	chr19:58772383-58772637(+)$1	254	162	188	12.4300
UCAUUACCAAGAAAUGCUUUGGUAUG	chr7:44923009-44923317(-)$1	308	239	265	9.7346
GACUGGCAGUUCUAAAAGAAUUGUUA	chr6:111694880-111695209(-)$1	329	228	254	11.7567
AAUAUAAUAAAGUUAGUUUUGUGAUA	chr10:129897179-129897480(-)$1	301	48	74	11.6394
UUGGAAGGGACCUUAAAGCCCUCUAA	chr1:203766418-203766703(+)$1	285	5	31	11.2830
agugaggauaauaaugcuacuuaccu	chrX:106309633-106309893(-)$1	260	95	121	8.9578
AAACCUUGUUGCUAAUACAGCGAGGU	chr6:64422239-64422514(+)$1	275	143	169	12.4300
UUUUCAUCAGGACAGUUCUCUAUGAA	chr15:40914291-40914596(+)$1	305	277	303	9.3263
UAAAAGUCCAACUACACUUGAGGCUU	chr4:760050-760303(-)$1	253	29	55	12.0252
AGCGACACCCGUGGAAGUGGGAGGAG	chr17:43225832-43226100(+)$1	268	226	252	11.9084
AGUCUUAAGGAACAACAUCAAAAAGA	chr2:109087048-109087306(+)$1	258	18	44	9.2915
GAAGGUGACUCAGAACCGUGUUGCCU	chr4:759929-760202(-)$1	273	39	65	13.0266
AAUGGGACAGUCUCUUGACUCAGCCA	chr6:111694048-111694310(-)$1	262	170	196	8.8332
GCAGUAGGCCAUAGAAUUGGCUACUG	chr1:92853100-92853521(+)$1	421	329	355	14.8377
UAAGCUUUCUCAACAAGGAGAAUCUU	chr21:39469258-39469496(-)$1	238	18	44	10.5721
ACGUUGGUUCUGAGCUGGGAUCCUGA	chr1:203769306-203769566(+)$1	260	212	238	13.0251
GAGGUGUAUCAUCUGUUUGACUCUUG	chr6:147613311-147613583(+)$1	272	145	171	11.2507
UAUGAGAAAGCUGCCUUGCAAUCUGA	chr1:67724667-67724962(+)$1	295	164	190	10.1955
GCCCUCACGGUGGAGUCGGCCAGGGC	chr13:108518857-108519174(-)$1	317	188	214	8.7649
ACACUCAGUGCAGGGGGGACACUGGG	chr19:41770836-41771103(+)$1	267	47	73	13.2012
GGCUCUGGUCAAACAGAUGAAUCAGA	chr3:121415970-121416260(-)$1	290	178	204	9.7569
UGUUCAGCUCCAUCUCAGGUGUUCAC	chr6:3270301-3270562(+)$1	261	19	45	10.8322
ugucucaugcugcauagggcaggagc	chr10:38409721-38410032(+)$1	311	22	48	12.4360
CUAUAUAUUUUUCUAGUGAAAUAUUU	chrX:106309991-106310251(-)$1	260	70	96	12.4779
agagaauuuuggaaagagaauuuuuu	chr18:9255272-9255515(+)$1	243	69	95	13.8252
AUGAUAUUCAGUUUCAUCUGAACUGU	chr4:761642-761885(-)$1	243	56	82	11.4587
AUGUAGGGGAUUAUGCUGUCUAUCGA	chr3:15084401-15084659(-)$1	258	199	225	10.8804
CUACUCCUUUCCCUGCAGAAACUCAG	chr1:203768747-203768965(+)$1	218	57	83	11.9246
UGGAUAUAAGUAAAUCUGCAGAGGAG	chr1:46073041-46073268(+)$1	227	98	124	9.1307
ACGUUGGUUCUGAGCUGGGAUCCUGA	chr1:203769420-203769659(+)$1	239	98	124	13.0251

#DB
(((((((((((.....))))))))))	chr10:38407909-38408195(+)$1	1	222	248	10.3162
(((...(..(((....)))..)....	chr1:46073068-46073296(+)$1	1	71	97	9.1307
(((((((.(((...)))...))))))	chr10:38410951-38411223(+)$1	1	0	26	9.3532
((.((.(((((......))))))).)	chr6:111694126-111694442(-)$1	1	224	250	10.0099
((((((((((((....))))))))))	chr10:43084679-43085048(-)$1	1	54	80	11.1460
...(((..(((......)))..)))(	chr8:59473933-59474219(+)$1	1	170	196	10.4393
(((((.(((((......)))..))..	chr1:155451356-155451640(-)$1	1	220	246	11.5885
(((((..((((......)))).))))	chr8:91018065-91018366(+)$1	1	116	142	13.0785
(((((...(((......)))))))))	chr15:40913962-40914228(+)$1	1	179	205	11.6252
(((((((((((......)))))))))	chr4:761223-761500(-)$1	1	110	136	13.9714
(((((((..(((....))).))))))	chr2:101624056-101624371(+)$1	1	42	68	10.7978
.(((((..(((......)))..))))	chr5:112177766-112178081(+)$1	1	49	75	12.1669
((((((((.........)))))))))	chr3:40577141-40577408(+)$1	1	82	108	9.9520
))(((((((((......)))))))))	chr4:761155-761423(-)$1	1	33	59	13.6759
...((((((((......)))).))))	chr2:109087823-109088099(+)$1	1	186	212	10.1238
((((((((((((...))).)))))))	chr12:54396516-54396819(+)$1	1	175	201	10.3637
..(((((((((.....))))))))).	chrX:106309747-106310031(-)$1	1	45	71	9.4901
((((((.((((......))))...))	chr17:58326922-58327203(-)$1	1	170	196	11.6986
(((((((((.........))).))))	chr3:49057705-49058041(-)$1	1	74	100	8.9930
((((((((.........)))))))))	chr3:40577044-40577326(+)$1	1	179	205	9.9520
..(((((((((......)))))))))	chr19:58772383-58772637(+)$1	1	162	188	12.4300
))).(((((((......)))))))..	chr7:44923009-44923317(-)$1	1	239	265	9.7346
...((((((((((...))))))))))	chr6:111694880-111695209(-)$1	1	228	254	11.7567
..(((.(((((......))))).)))	chr10:129897179-129897480(-)$1	1	48	74	11.6394
(((((.(((.(......)))))))))	chr1:203766418-203766703(+)$1	1	5	31	11.2830
(((((((.(((.........))))))	chrX:106309633-106309893(-)$1	1	95	121	8.9578
..(((((((((......)))))))))	chr6:64422239-64422514(+)$1	1	143	169	12.4300
(((((((..(((....)))..)))))	chr15:40914291-40914596(+)$1	1	277	303	9.3263
...((((((((......))).)))))	chr4:760050-760303(-)$1	1	29	55	12.0252
(.(..(.((((......)))).)..)	chr17:43225832-43226100(+)$1	1	226	252	11.9084
..((((...((......))...))))	chr2:109087048-109087306(+)$1	1	18	44	9.2915
..(((((((.(......).)))))))	chr4:759929-760202(-)$1	1	39	65	13.0266
..(((...((((....))))...)))	chr6:111694048-111694310(-)$1	1	170	196	8.8332
(((((((.(((......)))))))))	chr1:92853100-92853521(+)$1	1	329	355	14.8377
((((..(((((......))))).)))	chr21:39469258-39469496(-)$1	1	18	44	10.5721
.(...((.(((......))).))...	chr1:203769306-203769566(+)$1	1	212	238	13.0251
(((((((((((......)))....))	chr6:147613311-147613583(+)$1	1	145	171	11.2507
..(.(((..((......))..))).)	chr1:67724667-67724962(+)$1	1	164	190	10.1955
(((((...(((.(...).))))))))	chr13:108518857-108519174(-)$1	1	188	214	8.7649
.(.((((((((......).)))))))	chr19:41770836-41771103(+)$1	1	47	73	13.2012
((.((((((((......)).))))))	chr3:121415970-121416260(-)$1	1	178	204	9.7569
(((..(((.((......)).))).))	chr6:3270301-3270562(+)$1	1	19	45	10.8322
.(.(((.((((......)))).))))	chr10:38409721-38410032(+)$1	1	22	48	12.4360
(((.(((((((......)))))))..	chrX:106309991-106310251(-)$1	1	70	96	12.4779
((((((((((......))))))))))	chr18:9255272-9255515(+)$1	1	69	95	13.8252
((.((((((((......))))).)))	chr4:761642-761885(-)$1	1	56	82	11.4587
((((.((((((......)))).))..	chr3:15084401-15084659(-)$1	1	199	225	10.8804
((.(((.((((......))))....)	chr1:203768747-203768965(+)$1	1	57	83	11.9246
(((...(..(((....)))..)....	chr1:46073041-46073268(+)$1	1	98	124	9.1307
.(...((.(((......))).))...	chr1:203769420-203769659(+)$1	1	98	124	13.0251

#PSSM
g : 0.12	: : 0.10	i : 0.10	c : 0.08	= : 0.08	d : 0.08	# : 0.08	[ : 0.06	e : 0.06	! : 0.06	C : 0.04	f : 0.04	b : 0.02	$ : 0.02	% : 0.02	h : 0.02	a : 0.02	
= : 0.10	c : 0.10	g : 0.10	: : 0.10	d : 0.10	i : 0.10	e : 0.08	# : 0.08	a : 0.08	f : 0.04	b : 0.02	$ : 0.02	% : 0.02	h : 0.02	[ : 0.02	! : 0.02	
i : 0.19	c : 0.12	[ : 0.12	= : 0.10	g : 0.10	e : 0.08	d : 0.06	f : 0.04	# : 0.04	a : 0.04	" : 0.04	: : 0.02	$ : 0.02	h : 0.02	
i : 0.18	c : 0.16	= : 0.12	g : 0.12	e : 0.10	" : 0.08	d : 0.08	f : 0.04	! : 0.04	[ : 0.04	b : 0.02	: : 0.02	
i : 0.18	g : 0.16	c : 0.16	= : 0.12	" : 0.08	d : 0.08	e : 0.08	! : 0.06	f : 0.04	b : 0.02	[ : 0.02	
g : 0.16	i : 0.16	c : 0.14	= : 0.12	" : 0.10	[ : 0.08	d : 0.06	b : 0.06	! : 0.04	e : 0.04	a : 0.02	f : 0.02	
i : 0.16	g : 0.14	= : 0.12	e : 0.10	b : 0.08	" : 0.08	[ : 0.08	c : 0.08	! : 0.06	a : 0.04	d : 0.04	f : 0.02	
d : 0.16	i : 0.16	! : 0.14	[ : 0.10	e : 0.10	= : 0.08	" : 0.08	g : 0.08	c : 0.06	b : 0.02	f : 0.02	
c : 0.27	d : 0.16	i : 0.12	! : 0.10	= : 0.08	e : 0.08	g : 0.08	r : 0.04	" : 0.02	f : 0.02	[ : 0.02	
c : 0.34	d : 0.16	i : 0.10	= : 0.08	e : 0.08	b : 0.08	r : 0.06	g : 0.06	[ : 0.04	
c : 0.34	d : 0.16	i : 0.10	e : 0.08	b : 0.08	= : 0.06	r : 0.06	a : 0.06	g : 0.04	o : 0.02	
o : 0.68	c : 0.10	r : 0.08	n : 0.04	= : 0.04	l : 0.02	d : 0.02	[ : 0.02	
o : 0.68	m : 0.12	r : 0.08	n : 0.04	l : 0.04	= : 0.02	a : 0.02	
o : 0.68	m : 0.12	l : 0.08	r : 0.08	n : 0.04	
o : 0.68	m : 0.12	r : 0.08	l : 0.06	n : 0.04	c : 0.02	
o : 0.68	m : 0.12	r : 0.08	n : 0.04	c : 0.04	l : 0.04	
o : 0.66	c : 0.12	= : 0.08	r : 0.08	i : 0.02	d : 0.02	a : 0.02	
c : 0.27	d : 0.16	i : 0.14	= : 0.08	e : 0.08	b : 0.08	a : 0.06	r : 0.04	g : 0.04	3 : 0.02	] : 0.02	
c : 0.32	d : 0.16	i : 0.14	= : 0.08	e : 0.08	b : 0.08	] : 0.06	g : 0.04	3 : 0.02	r : 0.02	
c : 0.23	d : 0.16	i : 0.16	= : 0.08	2 : 0.08	e : 0.08	g : 0.08	] : 0.06	3 : 0.04	r : 0.02	
i : 0.16	2 : 0.14	d : 0.14	= : 0.12	g : 0.10	c : 0.10	e : 0.08	] : 0.06	f : 0.04	3 : 0.04	4 : 0.02	
i : 0.16	e : 0.14	= : 0.12	g : 0.12	] : 0.12	2 : 0.06	3 : 0.06	c : 0.06	a : 0.04	f : 0.04	b : 0.04	4 : 0.04	
i : 0.18	g : 0.14	= : 0.12	b : 0.10	c : 0.10	4 : 0.08	e : 0.08	] : 0.06	f : 0.04	d : 0.04	3 : 0.04	a : 0.02	
i : 0.18	g : 0.16	c : 0.14	= : 0.12	4 : 0.08	e : 0.08	b : 0.06	3 : 0.06	f : 0.04	d : 0.04	2 : 0.02	] : 0.02	
i : 0.18	c : 0.14	= : 0.12	g : 0.12	3 : 0.08	e : 0.08	4 : 0.06	f : 0.06	d : 0.06	] : 0.04	2 : 0.04	: : 0.02	
i : 0.16	= : 0.12	g : 0.12	c : 0.12	e : 0.10	3 : 0.10	f : 0.06	d : 0.06	a : 0.06	4 : 0.04	b : 0.02	: : 0.02	2 : 0.02	

#score	558.1127640979541
#seq	50
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_transcript_m2_run2.txt

#BEAR
iiiiiiiuuuuuuuuuuuuiiii	chr20:401266-401548(+)$1	282	189	212	23.0811
dd[cccwwwwwwwwwwwwwwccc	chr10:70518172-70518422(+)$1	250	16	39	21.6547
dd[ddddtttttttttttdddd]	chr2:198356852-198357105(-)$1	253	7	30	22.3494
fff[ccctttttttttttccc]f	chr16:31194193-31194424(+)$1	231	179	202	22.1965
[eeeeevvvvvvvvvvvvveeee	chr13:20253018-20253297(-)$1	279	84	107	23.1278
!!eeeeeuuuuuuuuuuuueeee	chr7:75566387-75566685(+)$1	298	183	206	23.0931
cc!!ddddtttttttttttdddd	chr6:30290463-30290751(-)$1	288	227	250	22.7661
hhhhhhhwwwwwwwwwwwwwwhh	chr16:89594120-89594426(+)$1	306	18	41	19.5698
cc[cccvvvvvvvvvvvvvcccc	chr2:176022962-176023209(-)$1	247	73	96	23.5539
::ddddvvvvvvvvvvvvvdddd	chrX:132993788-132994074(-)$1	286	103	126	21.7346
gg!!ddddtttttttttttdddd	chr11:2160225-2160431(-)$1	206	171	194	22.7116
=======uuuuuuuuuuuu====	chr2:235919532-235919792(+)$1	260	40	63	23.2441
bb!!ccctttttttttttccc22	chr3:197002335-197002619(-)$1	284	95	118	22.2659
JJddddvvvvvvvvvvvvvdddd	chr19:18496061-18496323(+)$1	262	82	105	20.8213
::ddddvvvvvvvvvvvvvdddd	chr3:197591663-197591971(+)$1	308	68	91	21.7346
ff!!ddddtttttttttttdddd	chr5:32268081-32268386(-)$1	305	261	284	22.5025
bbddddvvvvvvvvvvvvvdddd	chr14:21733722-21733989(-)$1	267	209	232	23.1618
eeeeewwwwwwwwwwwwwweeee	chr2:131893654-131893956(+)$1	302	142	165	21.2450
ccc[ccctttttttttttccc]c	chr1:8805811-8806041(-)$1	230	140	163	22.6038
iii[cccuuuuuuuuuuuuccc]	chr17:28462049-28462308(+)$1	259	27	50	23.5978
gggggggattttttttttta]gg	chr8:42999067-42999342(+)$1	275	10	33	22.3684
b!!eeeeettttttttttteeee	chr20:45969095-45969343(-)$1	248	145	168	22.2374
ddddddduuuuuuuuuuuudddd	chr17:26996562-26996817(+)$1	255	223	246	23.1406
ccbb[bbuuuuuuuuuuuubb]b	chr19:39447526-39447782(-)$1	256	88	111	21.2027
eeeee[bbtttttttttttbb]e	chr4:24581545-24581796(-)$1	251	176	199	21.3416
iiiiiiiuuuuuuuuuuuuiiii	chr14:35423326-35423535(-)$1	209	85	108	23.0811
eeeeeyyyyyyyyyyyyyyyyee	chr2:70309840-70310081(-)$1	241	94	117	19.8277
fffff[bbtttttttttttbb]f	chr3:141208723-141208980(+)$1	257	6	29	20.6913
ff[dddduuuuuuuuuuuudddd	chr20:47603331-47603616(+)$1	285	104	127	23.3739
FFFFddddtttttttttttdddd	chr10:21961028-21961304(+)$1	276	118	141	20.6235
gg!!bbwwwwwwwwwwwwwwbb2	chr2:203264958-203265242(+)$1	284	67	90	20.5939
f:eeeeevvvvvvvvvvvvveee	chr19:46360990-46361282(-)$1	292	180	203	21.8503
[eeeeevvvvvvvvvvvvveeee	chr6:31509086-31509339(-)$1	253	212	235	23.1278
=======uuuuuuuuuuuu====	chr4:79012701-79012963(+)$1	262	154	177	23.2441
:ddddwwwwwwwwwwwwwwdddd	chr10:104496094-104496348(+)$1	254	175	198	20.6435
hhhhhhhuuuuuuuuuuuuhhhh	chr11:101989155-101989418(+)$1	263	92	115	21.3581
bb!!cccvvvvvvvvvvvvvccc	chr21:46214591-46214853(-)$1	262	57	80	23.1303
b!!eeeeettttttttttteeee	chr20:35840435-35840712(+)$1	277	50	73	22.2374
EEddddvvvvvvvvvvvvvdddd	chr7:23379894-23380138(-)$1	244	189	212	21.7919
bb!!ccctttttttttttccc22	chr2:101878683-101878933(+)$1	250	190	213	22.2659
ddd[cccuuuuuuuuuuuuccc]	chr4:57284452-57284714(-)$1	262	150	173	23.3342
::eeeeeuuuuuuuuuuuueeee	chr2:32785567-32785811(+)$1	244	169	192	21.5094
[eeeeeyyyyyyyyyyyyyyyye	chr3:172055723-172055951(+)$1	228	57	80	19.7659
ffffffvvvvvvvvvvvvvffff	chr6:53188510-53188800(-)$1	290	86	109	21.8552
gggggggtttttttttttggggg	chr8:13027153-13027460(-)$1	307	74	97	21.7230
bbcccwwwwwwwwwwwwwwccc]	chr16:29707560-29707844(+)$1	284	238	261	21.2667
dd[ddddtttttttttttddddd	chr8:103419620-103419883(-)$1	263	35	58	22.3494
eeeeddddtttttttttttdddd	chr22:20848320-20848572(-)$1	252	83	106	22.2628
[fffffftttttttttttfffff	chr17:76195281-76195522(+)$1	241	4	27	20.7493
CCeeeeettttttttttteeeee	chr2:161340609-161340864(-)$1	255	146	169	20.3372
ddddcccvvvvvvvvvvvvvccc	chr16:81533574-81533846(+)$1	272	25	48	22.7155
efffffftttttttttttfffff	chr3:47769365-47769650(-)$1	285	191	214	20.6501
a"""ccctttttttttttccc33	chr1:151177802-151178068(+)$1	266	9	32	22.3519
ddddddduuuuuuuuuuuudddd	chr11:2160075-2160283(-)$1	208	77	100	23.1406
bb[eeeeettttttttttteeee	chr17:48807271-48807526(+)$1	255	163	186	22.1468
ee!!ddddtttttttttttdddd	chr16:87390934-87391195(-)$1	261	158	181	22.5601
cc[cccvvvvvvvvvvvvvccc]	chr19:30434827-30435085(+)$1	258	1	24	23.6250
hhhhhhhuuuuuuuuuuuuhhhh	chr20:47576009-47576284(+)$1	275	190	213	21.3581
dd[bbwwwwwwwwwwwwwwbb]d	chrX:108969284-108969536(-)$1	252	192	215	20.4577
hhhhbbwwwwwwwwwwwwwwbb]	chr17:73383387-73383627(-)$1	240	134	157	19.9048

#otherMatches

#Seq PSSM
GGGGUCUGACCCGCCCCCGAGGC	chr20:401266-401548(+)$1	282	189	212	23.0811
guagucgcagcacuuugagaggc	chr10:70518172-70518422(+)$1	250	16	39	21.6547
cuacuaaaaauauaaaaauuagc	chr2:198356852-198357105(-)$1	253	7	30	22.3494
GUUCCAUAUUUCUUUUCCGUGAA	chr16:31194193-31194424(+)$1	231	179	202	22.1965
UGUUUUAAAAAAUACUUACAgga	chr13:20253018-20253297(-)$1	279	84	107	23.1278
gacaucagccuggacaacguggu	chr7:75566387-75566685(+)$1	298	183	206	23.0931
ugcaggaagacgguuuugauucc	chr6:30290463-30290751(-)$1	288	227	250	22.7661
AGAGGUUUAUUGUUGACUUGUAA	chr16:89594120-89594426(+)$1	306	18	41	19.5698
acuccaaaaaaaauuuagcuggg	chr2:176022962-176023209(-)$1	247	73	96	23.5539
augugaucucuccuccccuucac	chrX:132993788-132994074(-)$1	286	103	126	21.7346
GCCUCGGGCCGCUCCCCUUUCCG	chr11:2160225-2160431(-)$1	206	171	194	22.7116
UAGGAGAACCCUUUCUCUCUCUC	chr2:235919532-235919792(+)$1	260	40	63	23.2441
auuugccuuucuuugucuggcuu	chr3:197002335-197002619(-)$1	284	95	118	22.2659
ccugggcucaaacaauccaccca	chr19:18496061-18496323(+)$1	262	82	105	20.8213
aaaugcaaaaauuaacugggcau	chr3:197591663-197591971(+)$1	308	68	91	21.7346
uguacuaaaaauacaaaaauuag	chr5:32268081-32268386(-)$1	305	261	284	22.5025
gccaggcuggccuugaauuccug	chr14:21733722-21733989(-)$1	267	209	232	23.1618
cucucucccCUGACCCCCUGAga	chr2:131893654-131893956(+)$1	302	142	165	21.2450
cuaccacagccucccaaagugcu	chr1:8805811-8806041(-)$1	230	140	163	22.6038
UCAAGAGGAAAUUCAGAAAUUUG	chr17:28462049-28462308(+)$1	259	27	50	23.5978
CAGUUGUCAUUAGAAAUCAGCAC	chr8:42999067-42999342(+)$1	275	10	33	22.3684
gcagugguuauucacaguugcca	chr20:45969095-45969343(-)$1	248	145	168	22.2374
cuacuaaaaaaaacaaaaauuag	chr17:26996562-26996817(+)$1	255	223	246	23.1406
CCACAGCUUCAUUCUUUCUGCGG	chr19:39447526-39447782(-)$1	256	88	111	21.2027
ggucaagagauugaaaccauccu	chr4:24581545-24581796(-)$1	251	176	199	21.3416
uucuuuuuuuuuuuuuuuugaga	chr14:35423326-35423535(-)$1	209	85	108	23.0811
guggcuccaucguagcucacugc	chr2:70309840-70310081(-)$1	241	94	117	19.8277
AGGUCACAAAAUAACAACAUGAG	chr3:141208723-141208980(+)$1	257	6	29	20.6913
uucaccguguugcccagucuggu	chr20:47603331-47603616(+)$1	285	104	127	23.3739
gacagggccuugcuuuguugccc	chr10:21961028-21961304(+)$1	276	118	141	20.6235
agcuaauuuuuuuuuuuuuuuuu	chr2:203264958-203265242(+)$1	284	67	90	20.5939
ccugggaaacaagagugaaauuc	chr19:46360990-46361282(-)$1	292	180	203	21.8503
ACCUAUUAGCUUUCUUAUUGUAG	chr6:31509086-31509339(-)$1	253	212	235	23.1278
uguggcuauucacaggcaagguc	chr4:79012701-79012963(+)$1	262	154	177	23.2441
ccugaacgauucuccugccucag	chr10:104496094-104496348(+)$1	254	175	198	20.6435
gcaguggcacgaucucaacucac	chr11:101989155-101989418(+)$1	263	92	115	21.3581
ucuuugcuucuuucaaaauugug	chr21:46214591-46214853(-)$1	262	57	80	23.1303
uuaauggcugcauauuauuGCUA	chr20:35840435-35840712(+)$1	277	50	73	22.2374
CAGCAGCAUCUUGUCUCCCCUGC	chr7:23379894-23380138(-)$1	244	189	212	21.7919
CAUUUUCUCUCUCUCUCUGAAUC	chr2:101878683-101878933(+)$1	250	190	213	22.2659
gcaaugggcugagaauacaccac	chr4:57284452-57284714(-)$1	262	150	173	23.3342
ucuuaggcucaaacauccuccug	chr2:32785567-32785811(+)$1	244	169	192	21.5094
UUGGUAUUUUCAUCUCCUAACUU	chr3:172055723-172055951(+)$1	228	57	80	19.7659
AAAGCUUGUUACUUAUCCUGGCU	chr6:53188510-53188800(-)$1	290	86	109	21.8552
caucuggcuuuuuuuuuuuuaga	chr8:13027153-13027460(-)$1	307	74	97	21.7230
cccugacucaaaaacaaaaCAGU	chr16:29707560-29707844(+)$1	284	238	261	21.2667
uggcuaauuuuuguauuuuuagu	chr8:103419620-103419883(-)$1	263	35	58	22.3494
gaaagggucgcgcuauauugccc	chr22:20848320-20848572(-)$1	252	83	106	22.2628
AGCUUUAAUCCAUCCAGCUGAAG	chr17:76195281-76195522(+)$1	241	4	27	20.7493
UACAUUUUUAUUAGCCUCAAAUG	chr2:161340609-161340864(-)$1	255	146	169	20.3372
GGAGGAGCCCUUUCUUCCUUCUC	chr16:81533574-81533846(+)$1	272	25	48	22.7155
caugugauaauugugccuuugcg	chr3:47769365-47769650(-)$1	285	191	214	20.6501
cagauaauuuuuguauuuuuagu	chr1:151177802-151178068(+)$1	266	9	32	22.3519
ACCGCCUGUCCCCCUCCCGAGGC	chr11:2160075-2160283(-)$1	208	77	100	23.1406
agcaggcuccucccauuccagcc	chr17:48807271-48807526(+)$1	255	163	186	22.1468
cuugaacccgggaggugaagguu	chr16:87390934-87391195(-)$1	261	158	181	22.5601
ccaaggaguucgagaucagccug	chr19:30434827-30435085(+)$1	258	1	24	23.6250
gcaguggcgcaaucucaaaucac	chr20:47576009-47576284(+)$1	275	190	213	21.3581
guaauuuguuuaauauguuguaa	chrX:108969284-108969536(-)$1	252	192	215	20.4577
aggugccaucauagcucacugca	chr17:73383387-73383627(-)$1	240	134	157	19.9048

#DB
(((((((............))))	chr20:401266-401548(+)$1	1	189	212	23.0811
((.(((..............)))	chr10:70518172-70518422(+)$1	1	16	39	21.6547
((.((((...........)))).	chr2:198356852-198357105(-)$1	1	7	30	22.3494
(((.(((...........))).)	chr16:31194193-31194424(+)$1	1	179	202	22.1965
.(((((.............))))	chr13:20253018-20253297(-)$1	1	84	107	23.1278
..(((((............))))	chr7:75566387-75566685(+)$1	1	183	206	23.0931
((..((((...........))))	chr6:30290463-30290751(-)$1	1	227	250	22.7661
(((((((..............))	chr16:89594120-89594426(+)$1	1	18	41	19.5698
((.(((.............))))	chr2:176022962-176023209(-)$1	1	73	96	23.5539
..((((.............))))	chrX:132993788-132994074(-)$1	1	103	126	21.7346
((..((((...........))))	chr11:2160225-2160431(-)$1	1	171	194	22.7116
(((((((............))))	chr2:235919532-235919792(+)$1	1	40	63	23.2441
((..(((...........)))..	chr3:197002335-197002619(-)$1	1	95	118	22.2659
((((((.............))))	chr19:18496061-18496323(+)$1	1	82	105	20.8213
..((((.............))))	chr3:197591663-197591971(+)$1	1	68	91	21.7346
((..((((...........))))	chr5:32268081-32268386(-)$1	1	261	284	22.5025
((((((.............))))	chr14:21733722-21733989(-)$1	1	209	232	23.1618
(((((..............))))	chr2:131893654-131893956(+)$1	1	142	165	21.2450
(((.(((...........))).)	chr1:8805811-8806041(-)$1	1	140	163	22.6038
(((.(((............))).	chr17:28462049-28462308(+)$1	1	27	50	23.5978
((((((((...........).))	chr8:42999067-42999342(+)$1	1	10	33	22.3684
(..(((((...........))))	chr20:45969095-45969343(-)$1	1	145	168	22.2374
(((((((............))))	chr17:26996562-26996817(+)$1	1	223	246	23.1406
((((.((............)).)	chr19:39447526-39447782(-)$1	1	88	111	21.2027
(((((.((...........)).)	chr4:24581545-24581796(-)$1	1	176	199	21.3416
(((((((............))))	chr14:35423326-35423535(-)$1	1	85	108	23.0811
(((((................))	chr2:70309840-70310081(-)$1	1	94	117	19.8277
(((((.((...........)).)	chr3:141208723-141208980(+)$1	1	6	29	20.6913
((.((((............))))	chr20:47603331-47603616(+)$1	1	104	127	23.3739
((((((((...........))))	chr10:21961028-21961304(+)$1	1	118	141	20.6235
((..((..............)).	chr2:203264958-203265242(+)$1	1	67	90	20.5939
).(((((.............)))	chr19:46360990-46361282(-)$1	1	180	203	21.8503
.(((((.............))))	chr6:31509086-31509339(-)$1	1	212	235	23.1278
(((((((............))))	chr4:79012701-79012963(+)$1	1	154	177	23.2441
.((((..............))))	chr10:104496094-104496348(+)$1	1	175	198	20.6435
(((((((............))))	chr11:101989155-101989418(+)$1	1	92	115	21.3581
((..(((.............)))	chr21:46214591-46214853(-)$1	1	57	80	23.1303
(..(((((...........))))	chr20:35840435-35840712(+)$1	1	50	73	22.2374
))((((.............))))	chr7:23379894-23380138(-)$1	1	189	212	21.7919
((..(((...........)))..	chr2:101878683-101878933(+)$1	1	190	213	22.2659
(((.(((............))).	chr4:57284452-57284714(-)$1	1	150	173	23.3342
..(((((............))))	chr2:32785567-32785811(+)$1	1	169	192	21.5094
.(((((................)	chr3:172055723-172055951(+)$1	1	57	80	19.7659
((((((.............))))	chr6:53188510-53188800(-)$1	1	86	109	21.8552
(((((((...........)))))	chr8:13027153-13027460(-)$1	1	74	97	21.7230
(((((..............))).	chr16:29707560-29707844(+)$1	1	238	261	21.2667
((.((((...........)))))	chr8:103419620-103419883(-)$1	1	35	58	22.3494
))))((((...........))))	chr22:20848320-20848572(-)$1	1	83	106	22.2628
.((((((...........)))))	chr17:76195281-76195522(+)$1	1	4	27	20.7493
(((((((...........)))))	chr2:161340609-161340864(-)$1	1	146	169	20.3372
(((((((.............)))	chr16:81533574-81533846(+)$1	1	25	48	22.7155
(((((((...........)))))	chr3:47769365-47769650(-)$1	1	191	214	20.6501
(...(((...........)))..	chr1:151177802-151178068(+)$1	1	9	32	22.3519
)))((((............))))	chr11:2160075-2160283(-)$1	1	77	100	23.1406
((.(((((...........))))	chr17:48807271-48807526(+)$1	1	163	186	22.1468
((..((((...........))))	chr16:87390934-87391195(-)$1	1	158	181	22.5601
((.(((.............))).	chr19:30434827-30435085(+)$1	1	1	24	23.6250
(((((((............))))	chr20:47576009-47576284(+)$1	1	190	213	21.3581
((.((..............)).)	chrX:108969284-108969536(-)$1	1	192	215	20.4577
((((((..............)).	chr17:73383387-73383627(-)$1	1	134	157	19.9048

#PSSM
d : 0.13	b : 0.13	f : 0.09	e : 0.09	c : 0.08	[ : 0.06	h : 0.06	: : 0.06	g : 0.06	i : 0.05	= : 0.03	! : 0.01	J : 0.01	F : 0.01	E : 0.01	C : 0.01	a : 0.01	
d : 0.15	e : 0.13	f : 0.11	b : 0.09	c : 0.08	h : 0.06	: : 0.06	g : 0.06	i : 0.05	! : 0.05	= : 0.03	J : 0.01	F : 0.01	E : 0.01	C : 0.01	" : 0.01	
e : 0.18	! : 0.16	d : 0.16	[ : 0.13	f : 0.08	h : 0.06	i : 0.05	= : 0.03	c : 0.03	g : 0.03	b : 0.01	F : 0.01	" : 0.01	
e : 0.23	d : 0.19	! : 0.13	c : 0.06	[ : 0.06	h : 0.06	f : 0.06	i : 0.03	= : 0.03	g : 0.03	b : 0.03	F : 0.01	" : 0.01	
d : 0.28	c : 0.21	e : 0.21	f : 0.06	h : 0.05	b : 0.05	i : 0.03	= : 0.03	g : 0.03	[ : 0.01	
d : 0.26	c : 0.19	e : 0.16	w : 0.06	h : 0.05	b : 0.05	f : 0.05	i : 0.03	= : 0.03	g : 0.03	[ : 0.03	y : 0.01	
d : 0.18	v : 0.16	c : 0.15	w : 0.11	e : 0.11	h : 0.05	b : 0.05	i : 0.03	= : 0.03	g : 0.03	y : 0.03	f : 0.03	
u : 0.23	v : 0.21	t : 0.18	w : 0.13	d : 0.09	e : 0.05	b : 0.03	y : 0.03	a : 0.01	
t : 0.38	u : 0.23	v : 0.21	w : 0.13	y : 0.03	
t : 0.38	u : 0.23	v : 0.21	w : 0.13	y : 0.03	
t : 0.38	u : 0.23	v : 0.21	w : 0.13	y : 0.03	
t : 0.38	u : 0.23	v : 0.21	w : 0.13	y : 0.03	
t : 0.38	u : 0.23	v : 0.21	w : 0.13	y : 0.03	
t : 0.38	u : 0.23	v : 0.21	w : 0.13	y : 0.03	
t : 0.38	u : 0.23	v : 0.21	w : 0.13	y : 0.03	
t : 0.38	u : 0.23	v : 0.21	w : 0.13	y : 0.03	
t : 0.38	u : 0.23	v : 0.21	w : 0.13	y : 0.03	
t : 0.38	u : 0.23	v : 0.21	w : 0.13	y : 0.03	
u : 0.23	v : 0.21	t : 0.19	w : 0.13	c : 0.08	d : 0.03	y : 0.03	f : 0.03	g : 0.01	e : 0.01	
d : 0.28	c : 0.16	e : 0.15	w : 0.06	b : 0.06	v : 0.05	f : 0.05	i : 0.03	= : 0.03	y : 0.03	h : 0.03	a : 0.01	g : 0.01	
d : 0.28	c : 0.21	e : 0.16	b : 0.09	f : 0.05	i : 0.03	= : 0.03	y : 0.03	h : 0.03	w : 0.01	] : 0.01	g : 0.01	
d : 0.28	e : 0.18	c : 0.13	] : 0.09	h : 0.05	f : 0.05	i : 0.03	= : 0.03	2 : 0.03	g : 0.03	b : 0.03	y : 0.01	3 : 0.01	
d : 0.28	e : 0.21	] : 0.09	c : 0.08	f : 0.08	h : 0.05	2 : 0.05	i : 0.03	= : 0.03	g : 0.03	b : 0.01	3 : 0.01	

#score	1319.2135120259277
#seq	60
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF039FGP_RBM22_CDS_m3_run2.txt

#BEAR
eeegggggggmmmmggggg	chr18:2700586-2700867(+)$1	281	75	94	8.9045
ffffff[cccmmmmccc22	chr17:78310107-78310362(+)$1	255	48	67	8.6060
cc[a!!ddddmmmmdddd2	chr1:1019491-1019808(-)$1	317	104	123	8.1469
fffff"""bbmmmmbb333	chr6:36937541-36937800(-)$1	259	115	134	7.4757
:eeeee[cccmmmmccc]e	chr5:81572033-81572287(-)$1	254	149	168	7.9518
"a!!bb[cccmmmmccc]b	chr12:125270684-125270965(-)$1	281	102	121	8.0238
addddeeeeemmmmeeeee	chr6:99852285-99852551(-)$1	266	234	253	8.5333
bbgggggggoooooogggg	chr17:40659575-40659821(+)$1	246	12	31	6.7404
cc[a!!eeeeellleeeee	chr12:122618457-122618765(+)$1	308	62	81	7.4775
b[gggggggammmma]ggg	chr14:104145831-104146108(+)$1	277	83	102	9.0324
ffff:eeeeemmmmeeeee	chr5:86690674-86690930(-)$1	256	169	188	8.2084
cc[gggggggmmmmggggg	chr5:180664426-180664677(-)$1	251	195	214	9.5264
:a[gggggggmmmmggggg	chr1:145439642-145439879(+)$1	237	2	21	8.7974
fffffeeeeemmmmeeeee	chr7:142962129-142962400(+)$1	271	138	157	9.1504
dddd[eeeeellleeeee]	chr1:224619047-224619302(-)$1	255	61	80	6.5153

#otherMatches

#Seq PSSM
GUUUGAUUUUUGCUGAAAU	chr18:2700586-2700867(+)$1	281	75	94	8.9045
ACCAGUACCUGCCCAGGAA	chr17:78310107-78310362(+)$1	255	48	67	8.6060
GGGUUUCCCAUCUCUGGGC	chr1:1019491-1019808(-)$1	317	104	123	8.1469
CUUGGUAUCUAUAAGGCAU	chr6:36937541-36937800(-)$1	259	115	134	7.4757
CUCACAUGAAAGUAUUUUU	chr5:81572033-81572287(-)$1	254	149	168	7.9518
UCGCUUGCCUGCUGGGGGA	chr12:125270684-125270965(-)$1	281	102	121	8.0238
GCUAUACAAAUAUUUUUGU	chr6:99852285-99852551(-)$1	266	234	253	8.5333
GGAUGCUGAGAUUAUUCAG	chr17:40659575-40659821(+)$1	246	12	31	6.7404
CCCGUAUCGCCCCAGGUGA	chr12:122618457-122618765(+)$1	308	62	81	7.4775
GGAGGCGCCCCCAAGUGGC	chr14:104145831-104146108(+)$1	277	83	102	9.0324
GAGUUGUGGGUUUUUUCAU	chr5:86690674-86690930(-)$1	256	169	188	8.2084
GUUGAUGAGGAUGCCCUCG	chr5:180664426-180664677(-)$1	251	195	214	9.5264
CGGCUUUGAGCUUCCUCAG	chr1:145439642-145439879(+)$1	237	2	21	8.7974
UCCUGCCCCCGCCCGGGGG	chr7:142962129-142962400(+)$1	271	138	157	9.1504
CCUCAUGCUAUUGUGGUAA	chr1:224619047-224619302(-)$1	255	61	80	6.5153

#DB
((((((((((....)))))	chr18:2700586-2700867(+)$1	1	75	94	8.9045
((((((.(((....)))..	chr17:78310107-78310362(+)$1	1	48	67	8.6060
((.(..((((....)))).	chr1:1019491-1019808(-)$1	1	104	123	8.1469
(((((...((....))...	chr6:36937541-36937800(-)$1	1	115	134	7.4757
.(((((.(((....))).)	chr5:81572033-81572287(-)$1	1	149	168	7.9518
.(..((.(((....))).)	chr12:125270684-125270965(-)$1	1	102	121	8.0238
)))))(((((....)))))	chr6:99852285-99852551(-)$1	1	234	253	8.5333
(((((((((......))))	chr17:40659575-40659821(+)$1	1	12	31	6.7404
((.(..(((((...)))))	chr12:122618457-122618765(+)$1	1	62	81	7.4775
(.((((((((....).)))	chr14:104145831-104146108(+)$1	1	83	102	9.0324
)))).(((((....)))))	chr5:86690674-86690930(-)$1	1	169	188	8.2084
((.(((((((....)))))	chr5:180664426-180664677(-)$1	1	195	214	9.5264
.(.(((((((....)))))	chr1:145439642-145439879(+)$1	1	2	21	8.7974
)))))(((((....)))))	chr7:142962129-142962400(+)$1	1	138	157	9.1504
((((.(((((...))))).	chr1:224619047-224619302(-)$1	1	61	80	6.5153

#PSSM
f : 0.26	c : 0.20	: : 0.13	b : 0.13	e : 0.06	" : 0.06	a : 0.06	d : 0.06	
f : 0.26	c : 0.20	e : 0.13	a : 0.13	d : 0.13	b : 0.06	[ : 0.06	
f : 0.26	[ : 0.26	e : 0.13	d : 0.13	g : 0.13	! : 0.06	
g : 0.33	f : 0.26	a : 0.13	d : 0.13	e : 0.06	! : 0.06	
g : 0.33	f : 0.20	! : 0.13	e : 0.06	b : 0.06	d : 0.06	: : 0.06	[ : 0.06	
g : 0.33	e : 0.33	! : 0.13	f : 0.06	" : 0.06	b : 0.06	
g : 0.33	e : 0.33	[ : 0.20	d : 0.06	" : 0.06	
g : 0.33	e : 0.33	c : 0.20	d : 0.06	" : 0.06	
g : 0.33	e : 0.33	c : 0.20	d : 0.06	b : 0.06	
e : 0.33	g : 0.20	c : 0.20	d : 0.06	b : 0.06	o : 0.06	a : 0.06	
m : 0.79	o : 0.06	e : 0.06	l : 0.06	
m : 0.79	l : 0.13	o : 0.06	
m : 0.79	l : 0.13	o : 0.06	
m : 0.79	o : 0.06	l : 0.06	e : 0.06	
e : 0.33	g : 0.20	c : 0.20	d : 0.06	b : 0.06	o : 0.06	a : 0.06	
e : 0.33	g : 0.26	c : 0.20	d : 0.06	b : 0.06	] : 0.06	
g : 0.33	e : 0.33	c : 0.20	d : 0.06	3 : 0.06	
g : 0.33	e : 0.33	] : 0.13	2 : 0.06	d : 0.06	3 : 0.06	
g : 0.33	e : 0.33	2 : 0.13	3 : 0.06	b : 0.06	] : 0.06	

#score	123.09109159235334
#seq	15
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_UTR_m3_run2.txt

#BEAR
ddd!!aqqqqqqqqa22dd	chr17:4794261-4794516(+)$1	255	95	114	13.1144
eeddddqqqqqqqqdddd2	chr12:49233557-49233792(-)$1	235	127	146	13.9032
:eeeeeqqqqqqqqeeeee	chr3:156867800-156868029(-)$1	229	161	180	14.0069
cc[cccqqqqqqqqccccc	chr16:1809869-1810116(+)$1	247	40	59	14.4017
eeeeaaqqqqqqqqa]a]e	chr17:40134198-40134511(-)$1	313	101	120	14.3119
ccc[bbqqqqqqqqbb]cc	chr19:5641518-5641765(+)$1	247	106	125	12.9980
ggggggqqqqqqqqggggg	chr7:104716409-104716625(+)$1	216	12	31	14.1601
&eeeeeqqqqqqqqeeeee	chr17:56083224-56083433(-)$1	209	43	62	14.3343
###cccqqqqqqqqccc44	chr6:44114497-44114743(+)$1	246	82	101	14.7665
:eeeeeqqqqqqqqeeeee	chr11:102953894-102954152(-)$1	258	234	253	14.0069
ccddddqqqqqqqqdddd]	chr16:720220-720457(+)$1	237	86	105	13.9736
###cccqqqqqqqqccc44	chr1:28564320-28564537(+)$1	217	31	50	14.7665
d[bb[aqqqqqqqqa]bb]	chr7:129520630-129520859(-)$1	229	52	71	13.0011
###cccqqqqqqqqcccff	chr12:62949672-62949937(+)$1	265	14	33	14.5588
====bbqqqqqqqqbb]==	chr12:82751901-82752257(-)$1	356	302	321	13.5561
[eeeeeqqqqqqqqeeeee	chr7:155537725-155538033(+)$1	308	212	231	14.8968
!ccc[aqqqqqqqqacccd	chr16:69689429-69689738(+)$1	309	180	199	14.2766
ee[cccqqqqqqqqccc]e	chr4:79792994-79793202(+)$1	208	150	169	14.7522
b!!cccqqqqqqqqccc22	chr7:75609556-75609829(+)$1	273	38	57	14.5416
beeeeeqqqqqqqqeeeee	chr14:65381090-65381359(+)$1	269	116	135	14.6104
"eeeeeqqqqqqqqeeeee	chr11:74647828-74648095(-)$1	267	123	142	14.9354
!!ddddqqqqqqqqdddd2	chr17:4120154-4120438(-)$1	284	89	108	14.3040
:eeeeeqqqqqqqqeeeee	chr7:86813770-86814042(+)$1	272	147	166	14.0069
ffffffqqqqqqqqfffff	chr1:151342064-151342340(-)$1	276	36	55	13.1958
ffffffqqqqqqqqfffff	chr5:179151635-179151885(+)$1	250	211	230	13.1958
Eeeeeeqqqqqqqqeeeee	chr17:29112850-29113137(-)$1	287	165	184	13.8968
:eeeeeqqqqqqqqeeeee	chr14:91976406-91976654(-)$1	248	154	173	14.0069
dddd[aqqqqqqqqa]ddd	chr6:136582404-136582695(-)$1	291	97	116	13.6796
:eeeeeqqqqqqqqeeeee	chr11:47315398-47315635(+)$1	237	147	166	14.0069
ee!!bbqqqqqqqqbbeee	chr2:159477812-159478040(+)$1	228	98	117	13.6783
gg[cccqqqqqqqqccc]g	chr5:65474815-65475112(+)$1	297	127	146	14.7248
[eeeeeqqqqqqqqeeeee	chr9:100777766-100778031(+)$1	265	230	249	14.8968
c[ddddqqqqqqqqddddc	chr19:5616050-5616311(-)$1	261	235	254	14.0438
ffffffqqqqqqqqfffff	chr3:9489429-9489680(+)$1	251	170	189	13.1958
e!!cccqqqqqqqqccc22	chr19:9764195-9764446(-)$1	251	45	64	14.5868
!!ddddqqqqqqqqdddd2	chr11:3033383-3033606(-)$1	223	7	26	14.3040
:eeeeeqqqqqqqqeeeee	chr3:9486863-9487085(+)$1	222	159	178	14.0069
eeeeeeqqqqqqqqeeeee	chr9:128103355-128103575(+)$1	220	45	64	14.6557
iii[bbqqqqqqqqbb]ii	chr5:70751527-70751819(+)$1	292	84	103	13.3285
c!!cccqqqqqqqqccc22	chr7:99935721-99935988(+)$1	267	206	225	14.6833
gggg[aqqqqqqqqagggg	chr1:46079867-46080084(+)$1	217	91	110	14.2934
cc[cccqqqqqqqqccc]c	chr9:95077279-95077540(-)$1	261	157	176	14.5565
eeeebbqqqqqqqqbb22e	chr2:208442183-208442486(+)$1	303	130	149	13.1783
d[bb[aqqqqqqqqa]bb]	chr7:129520659-129520913(-)$1	254	106	125	13.0011
iiiiiiqqqqqqqqiiiii	chr20:32441238-32441511(+)$1	273	116	135	14.1395
ccccccqqqqqqqqccc22	chr14:102550079-102550339(-)$1	260	116	135	14.2384
d!!cccqqqqqqqqcccdd	chr1:29010003-29010340(+)$1	337	232	251	14.5216
eeee[aqqqqqqqqaeeee	chr16:69725792-69726026(+)$1	234	30	49	14.6460
gggcccqqqqqqqqcccHH	chr20:34304562-34304791(-)$1	229	72	91	12.9915
"""cccqqqqqqqqccc]c	chr1:89225807-89226086(+)$1	279	195	214	14.8207
[eeeeeqqqqqqqqeeeee	chr12:112429457-112429693(-)$1	236	202	221	14.8968
b[ddddqqqqqqqqdddd]	chr1:249148034-249148248(-)$1	214	64	83	14.0675
b[ddddqqqqqqqqddddb	chr1:11894205-11894456(+)$1	251	67	86	13.5971
b[ddddqqqqqqqqdddd]	chr3:142756849-142757067(+)$1	218	114	133	14.0675
======qqqqqqqq=====	chr9:125895051-125895313(-)$1	262	14	33	14.4845
dd[cccqqqqqqqqccc]d	chr3:44794725-44795005(-)$1	280	143	162	14.3056
$$$cccqqqqqqqqccc22	chr14:73580906-73581139(+)$1	233	45	64	13.9958
ffffffqqqqqqqqfffff	chr21:34996883-34997162(-)$1	279	63	82	13.1958
##ddddqqqqqqqqdddd5	chr15:63928229-63928437(-)$1	208	135	154	13.4037
ggggggqqqqqqqqggggg	chr4:54325414-54325714(+)$1	300	276	295	14.1601
ffffffqqqqqqqqfffff	chr9:32985874-32986130(-)$1	256	177	196	13.1958
!eeeeeqqqqqqqqeeeee	chr11:831433-831682(+)$1	249	223	242	14.9499
!eeeeeqqqqqqqqeeeee	chr6:35259022-35259277(+)$1	255	217	236	14.9499
d"""bbqqqqqqqqbb333	chr1:163315367-163315574(+)$1	207	95	114	13.4121
ggggggqqqqqqqqggggg	chr17:40865266-40865495(-)$1	229	190	209	14.1601
""ddddqqqqqqqqdddd3	chr5:76987188-76987424(-)$1	236	17	36	14.3762
#eeeeeqqqqqqqqeeeee	chr3:156867758-156867972(-)$1	214	104	123	14.9185
iiiiiiqqqqqqqqiiiii	chr10:35349700-35349943(-)$1	243	73	92	14.1395
"eeeeeqqqqqqqqeeeee	chr10:70545793-70546033(+)$1	240	21	40	14.9354
[a[cccqqqqqqqqccc]a	chr17:16049588-16049842(-)$1	254	155	174	14.6998

#otherMatches

#Seq PSSM
GGACCCCUUUCCCAGACUC	chr17:4794261-4794516(+)$1	255	95	114	13.1144
CUGGCCAAGAAAAAGGCUG	chr12:49233557-49233792(-)$1	235	127	146	13.9032
UAUACCAGAAAAAAGGUAU	chr3:156867800-156868029(-)$1	229	161	180	14.0069
UGACCUGUUUUGAAGGGCA	chr16:1809869-1810116(+)$1	247	40	59	14.4017
AGCUCCUAAAAAAUGCGCA	chr17:40134198-40134511(-)$1	313	101	120	14.3119
GGUGUGGAAGAUAACGGGC	chr19:5641518-5641765(+)$1	247	106	125	12.9980
AUUAAUUCUUAAAUAUUAA	chr7:104716409-104716625(+)$1	216	12	31	14.1601
GCUUAACGUGAAAUUUAAG	chr17:56083224-56083433(-)$1	209	43	62	14.3343
UCAGGGAAGCCUACCCCAA	chr6:44114497-44114743(+)$1	246	82	101	14.7665
UCGAGACACUUUAAUCUUG	chr11:102953894-102954152(-)$1	258	234	253	14.0069
GCCGUGCUCCCCAUCAUGA	chr16:720220-720457(+)$1	237	86	105	13.9736
CAGAGUAGAGAACAACUGG	chr1:28564320-28564537(+)$1	217	31	50	14.7665
GAGAGUAAACAUGAGGUUA	chr7:129520630-129520859(-)$1	229	52	71	13.0011
UUUGUAGAUUCUUAUGCUG	chr12:62949672-62949937(+)$1	265	14	33	14.5588
UUAGGAUAUAAGAUUCGCU	chr12:82751901-82752257(-)$1	356	302	321	13.5561
UUCUUGUUAAAAACCAGGA	chr7:155537725-155538033(+)$1	308	212	231	14.8968
UGGACGAAAUACAACUCCU	chr16:69689429-69689738(+)$1	309	180	199	14.2766
UGGUGUUGGAAUUCACAGU	chr4:79792994-79793202(+)$1	208	150	169	14.7522
CGGGUUGAACCUUGAACAG	chr7:75609556-75609829(+)$1	273	38	57	14.5416
CGUCGCGAUGUGUGGCGAC	chr14:65381090-65381359(+)$1	269	116	135	14.6104
AUCAGGUGGACCUUCCUGG	chr11:74647828-74648095(-)$1	267	123	142	14.9354
AGAGGAUGAUGUGUUCCUG	chr17:4120154-4120438(-)$1	284	89	108	14.3040
AGAUGAAAUCAAUCUCAUC	chr7:86813770-86814042(+)$1	272	147	166	14.0069
GGAGGGAGCCUUCACCCUC	chr1:151342064-151342340(-)$1	276	36	55	13.1958
ACAGUCAAGUUAAGGAUUG	chr5:179151635-179151885(+)$1	250	211	230	13.1958
UGCAGCGGGAUCAAGCUGU	chr17:29112850-29113137(-)$1	287	165	184	13.8968
AGCAGGAUCAGGCGCCUGU	chr14:91976406-91976654(-)$1	248	154	173	14.0069
UGGUGUGGAUUAUUGGGCC	chr6:136582404-136582695(-)$1	291	97	116	13.6796
CCUUGUUGAAAUUUGCAAG	chr11:47315398-47315635(+)$1	237	147	166	14.0069
CUGAAGGACAAACACUGGU	chr2:159477812-159478040(+)$1	228	98	117	13.6783
CACACUUGUCAUGUGGUCU	chr5:65474815-65475112(+)$1	297	127	146	14.7248
GAGUCAACCGUCUGUGGCU	chr9:100777766-100778031(+)$1	265	230	249	14.8968
UCGUGUGAGGGAGAACACA	chr19:5616050-5616311(-)$1	261	235	254	14.0438
CAGGCCAUUAACAGGGUCU	chr3:9489429-9489680(+)$1	251	170	189	13.1958
GCCUCUAUUGGACAAGAAC	chr19:9764195-9764446(-)$1	251	45	64	14.5868
CCCUGCCCUGUGUCGCGGC	chr11:3033383-3033606(-)$1	223	7	26	14.3040
AUCCUCCAAAGGAAGAGGA	chr3:9486863-9487085(+)$1	222	159	178	14.0069
UUAGUAAUUUAUCCUGCUA	chr9:128103355-128103575(+)$1	220	45	64	14.6557
GGGCGUAGUUCCUAAUCCC	chr5:70751527-70751819(+)$1	292	84	103	13.3285
CAGcccagcuauucgggag	chr7:99935721-99935988(+)$1	267	206	225	14.6833
UUUUAGGCAAGAAACAAAA	chr1:46079867-46080084(+)$1	217	91	110	14.2934
UGAUGGACCAGAAACCACC	chr9:95077279-95077540(-)$1	261	157	176	14.5565
AGCACUUCCUACACAGCCU	chr2:208442183-208442486(+)$1	303	130	149	13.1783
GAGAGUAAACAUGAGGUUA	chr7:129520659-129520913(-)$1	254	106	125	13.0011
GGAUCCAUGUAAUGGGGUC	chr20:32441238-32441511(+)$1	273	116	135	14.1395
UUUGGUCAAAAAAUGCUUA	chr14:102550079-102550339(-)$1	260	116	135	14.2384
CAGCCUGUGCAACAAGGGU	chr1:29010003-29010340(+)$1	337	232	251	14.5216
CAGGACAUCUCACAGCCUG	chr16:69725792-69726026(+)$1	234	30	49	14.6460
UAUCCAGCUGAUGAUGGAC	chr20:34304562-34304791(-)$1	229	72	91	12.9915
AAAGUAAAACAAGGUGCAG	chr1:89225807-89226086(+)$1	279	195	214	14.8207
AUUCACCUUGGGAAGUGGA	chr12:112429457-112429693(-)$1	236	202	221	14.8968
UCUUUCAACUUUAAGAAAC	chr1:249148034-249148248(-)$1	214	64	83	14.0675
UCGGUGUUUUCCUUCACUA	chr1:11894205-11894456(+)$1	251	67	86	13.5971
GACUCAAAAAAGAAUGAGC	chr3:142756849-142757067(+)$1	218	114	133	14.0675
AAAUAAAAUGGUUCUUAUU	chr9:125895051-125895313(-)$1	262	14	33	14.4845
UCUUUUGACAACGAAGAUG	chr3:44794725-44795005(-)$1	280	143	162	14.3056
uuuuuauuuauuuuuaauG	chr14:73580906-73581139(+)$1	233	45	64	13.9958
AUAACAUAUUGUUUUGUUA	chr21:34996883-34997162(-)$1	279	63	82	13.1958
AUGGGCACUCUAUGGCCCU	chr15:63928229-63928437(-)$1	208	135	154	13.4037
UUUAAGAAAUUUACCUUAA	chr4:54325414-54325714(+)$1	300	276	295	14.1601
UGGAAUUUCAGUACAUUUC	chr9:32985874-32986130(-)$1	256	177	196	13.1958
GCUGGGCUCGGCCCCCCAG	chr11:831433-831682(+)$1	249	223	242	14.9499
UUUCAGACUUAGACCUGGA	chr6:35259022-35259277(+)$1	255	217	236	14.9499
CAAAGCAAGAAGUGGUGGA	chr1:163315367-163315574(+)$1	207	95	114	13.4121
UCAGCCUCUGCUGUGGCUG	chr17:40865266-40865495(-)$1	229	190	209	14.1601
UUAAUGGUUUGUAAUAUUU	chr5:76987188-76987424(-)$1	236	17	36	14.3762
UAUACCAGAAAAAAGGUAU	chr3:156867758-156867972(-)$1	214	104	123	14.9185
ACUUGUUAUGUAUCAUAGG	chr10:35349700-35349943(-)$1	243	73	92	14.1395
aacagucaugugccacugu	chr10:70545793-70546033(+)$1	240	21	40	14.9354
GAGUAGUUUGAUGUUUAAU	chr17:16049588-16049842(-)$1	254	155	174	14.6998

#DB
(((..(........)..))	chr17:4794261-4794516(+)$1	1	95	114	13.1144
((((((........)))).	chr12:49233557-49233792(-)$1	1	127	146	13.9032
.(((((........)))))	chr3:156867800-156868029(-)$1	1	161	180	14.0069
((.(((........)))))	chr16:1809869-1810116(+)$1	1	40	59	14.4017
((((((........).).)	chr17:40134198-40134511(-)$1	1	101	120	14.3119
(((.((........)).))	chr19:5641518-5641765(+)$1	1	106	125	12.9980
((((((........)))))	chr7:104716409-104716625(+)$1	1	12	31	14.1601
.(((((........)))))	chr17:56083224-56083433(-)$1	1	43	62	14.3343
...(((........)))..	chr6:44114497-44114743(+)$1	1	82	101	14.7665
.(((((........)))))	chr11:102953894-102954152(-)$1	1	234	253	14.0069
((((((........)))).	chr16:720220-720457(+)$1	1	86	105	13.9736
...(((........)))..	chr1:28564320-28564537(+)$1	1	31	50	14.7665
(.((.(........).)).	chr7:129520630-129520859(-)$1	1	52	71	13.0011
...(((........)))))	chr12:62949672-62949937(+)$1	1	14	33	14.5588
((((((........)).))	chr12:82751901-82752257(-)$1	1	302	321	13.5561
.(((((........)))))	chr7:155537725-155538033(+)$1	1	212	231	14.8968
.(((.(........)))))	chr16:69689429-69689738(+)$1	1	180	199	14.2766
((.(((........))).)	chr4:79792994-79793202(+)$1	1	150	169	14.7522
(..(((........)))..	chr7:75609556-75609829(+)$1	1	38	57	14.5416
((((((........)))))	chr14:65381090-65381359(+)$1	1	116	135	14.6104
.(((((........)))))	chr11:74647828-74648095(-)$1	1	123	142	14.9354
..((((........)))).	chr17:4120154-4120438(-)$1	1	89	108	14.3040
.(((((........)))))	chr7:86813770-86814042(+)$1	1	147	166	14.0069
((((((........)))))	chr1:151342064-151342340(-)$1	1	36	55	13.1958
((((((........)))))	chr5:179151635-179151885(+)$1	1	211	230	13.1958
((((((........)))))	chr17:29112850-29113137(-)$1	1	165	184	13.8968
.(((((........)))))	chr14:91976406-91976654(-)$1	1	154	173	14.0069
((((.(........).)))	chr6:136582404-136582695(-)$1	1	97	116	13.6796
.(((((........)))))	chr11:47315398-47315635(+)$1	1	147	166	14.0069
((..((........)))))	chr2:159477812-159478040(+)$1	1	98	117	13.6783
((.(((........))).)	chr5:65474815-65475112(+)$1	1	127	146	14.7248
.(((((........)))))	chr9:100777766-100778031(+)$1	1	230	249	14.8968
(.((((........)))))	chr19:5616050-5616311(-)$1	1	235	254	14.0438
((((((........)))))	chr3:9489429-9489680(+)$1	1	170	189	13.1958
(..(((........)))..	chr19:9764195-9764446(-)$1	1	45	64	14.5868
..((((........)))).	chr11:3033383-3033606(-)$1	1	7	26	14.3040
.(((((........)))))	chr3:9486863-9487085(+)$1	1	159	178	14.0069
)(((((........)))))	chr9:128103355-128103575(+)$1	1	45	64	14.6557
(((.((........)).))	chr5:70751527-70751819(+)$1	1	84	103	13.3285
(..(((........)))..	chr7:99935721-99935988(+)$1	1	206	225	14.6833
((((.(........)))))	chr1:46079867-46080084(+)$1	1	91	110	14.2934
((.(((........))).)	chr9:95077279-95077540(-)$1	1	157	176	14.5565
((((((........))..)	chr2:208442183-208442486(+)$1	1	130	149	13.1783
(.((.(........).)).	chr7:129520659-129520913(-)$1	1	106	125	13.0011
((((((........)))))	chr20:32441238-32441511(+)$1	1	116	135	14.1395
((((((........)))..	chr14:102550079-102550339(-)$1	1	116	135	14.2384
(..(((........)))))	chr1:29010003-29010340(+)$1	1	232	251	14.5216
((((.(........)))))	chr16:69725792-69726026(+)$1	1	30	49	14.6460
)))(((........)))((	chr20:34304562-34304791(-)$1	1	72	91	12.9915
...(((........))).)	chr1:89225807-89226086(+)$1	1	195	214	14.8207
.(((((........)))))	chr12:112429457-112429693(-)$1	1	202	221	14.8968
(.((((........)))).	chr1:249148034-249148248(-)$1	1	64	83	14.0675
(.((((........)))))	chr1:11894205-11894456(+)$1	1	67	86	13.5971
(.((((........)))).	chr3:142756849-142757067(+)$1	1	114	133	14.0675
((((((........)))))	chr9:125895051-125895313(-)$1	1	14	33	14.4845
((.(((........))).)	chr3:44794725-44795005(-)$1	1	143	162	14.3056
...(((........)))..	chr14:73580906-73581139(+)$1	1	45	64	13.9958
((((((........)))))	chr21:34996883-34997162(-)$1	1	63	82	13.1958
..((((........)))).	chr15:63928229-63928437(-)$1	1	135	154	13.4037
((((((........)))))	chr4:54325414-54325714(+)$1	1	276	295	14.1601
((((((........)))))	chr9:32985874-32986130(-)$1	1	177	196	13.1958
.(((((........)))))	chr11:831433-831682(+)$1	1	223	242	14.9499
.(((((........)))))	chr6:35259022-35259277(+)$1	1	217	236	14.9499
(...((........))...	chr1:163315367-163315574(+)$1	1	95	114	13.4121
((((((........)))))	chr17:40865266-40865495(-)$1	1	190	209	14.1601
..((((........)))).	chr5:76987188-76987424(-)$1	1	17	36	14.3762
.(((((........)))))	chr3:156867758-156867972(-)$1	1	104	123	14.9185
((((((........)))))	chr10:35349700-35349943(-)$1	1	73	92	14.1395
.(((((........)))))	chr10:70545793-70546033(+)$1	1	21	40	14.9354
.(.(((........))).)	chr17:16049588-16049842(-)$1	1	155	174	14.6998

#PSSM
e : 0.11	d : 0.10	c : 0.10	: : 0.08	g : 0.08	# : 0.07	! : 0.07	b : 0.07	f : 0.07	[ : 0.05	" : 0.05	i : 0.04	= : 0.02	& : 0.01	E : 0.01	$ : 0.01	
e : 0.34	c : 0.08	g : 0.08	[ : 0.08	! : 0.08	f : 0.07	# : 0.05	d : 0.04	i : 0.04	" : 0.04	= : 0.02	$ : 0.01	a : 0.01	
e : 0.30	d : 0.17	[ : 0.08	g : 0.07	! : 0.07	f : 0.07	c : 0.04	# : 0.04	i : 0.04	b : 0.02	= : 0.02	" : 0.02	$ : 0.01	
e : 0.30	c : 0.25	d : 0.15	f : 0.07	g : 0.05	! : 0.02	[ : 0.02	b : 0.02	= : 0.02	i : 0.02	" : 0.01	
e : 0.25	c : 0.24	d : 0.14	b : 0.08	[ : 0.08	f : 0.07	g : 0.04	i : 0.02	! : 0.01	a : 0.01	= : 0.01	
e : 0.25	c : 0.24	d : 0.14	a : 0.11	b : 0.08	f : 0.07	g : 0.04	i : 0.02	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.25	c : 0.24	d : 0.14	a : 0.11	b : 0.08	f : 0.07	g : 0.04	i : 0.02	= : 0.01	
e : 0.27	c : 0.25	d : 0.14	b : 0.08	f : 0.07	] : 0.05	g : 0.05	i : 0.02	2 : 0.01	= : 0.01	
e : 0.28	c : 0.25	d : 0.15	f : 0.07	g : 0.05	] : 0.04	2 : 0.02	b : 0.02	i : 0.02	a : 0.01	= : 0.01	3 : 0.01	
e : 0.28	d : 0.18	] : 0.10	f : 0.08	2 : 0.08	g : 0.05	c : 0.04	i : 0.04	4 : 0.02	b : 0.02	= : 0.02	H : 0.01	3 : 0.01	
e : 0.32	2 : 0.11	f : 0.08	d : 0.07	c : 0.07	g : 0.07	] : 0.07	i : 0.04	4 : 0.02	= : 0.02	3 : 0.02	H : 0.01	b : 0.01	5 : 0.01	a : 0.01	

#score	988.5725600727243
#seq	70
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_CDS_m1_run1.txt

#BEAR
FFfffffftttttttttttffffff	chr16:56970488-56970732(+)$1	244	4	29	22.7480
::eeeeeuuuuuuuuuuuueeeee:	chr1:172546811-172547081(+)$1	270	186	211	20.2234
bb[eeeeettttttttttteeeee]	chr18:2578814-2579058(+)$1	244	70	95	23.3406
b[fffffftttttttttttffffff	chrX:135961350-135961599(-)$1	249	90	115	23.2963
Iffffffuuuuuuuuuuuuffffff	chr12:8075492-8075738(-)$1	246	29	54	21.7315
gggggg[auuuuuuuuuuuua]ggg	chr16:74685676-74685937(-)$1	261	171	196	23.6897
ddfffffftttttttttttffffff	chr7:156956402-156956688(+)$1	286	176	201	23.1170
a[ffffffvvvvvvvvvvvvvffff	chr12:57058444-57058729(-)$1	285	173	198	22.5521
:ffffffuuuuuuuuuuuuffffff	chr2:153547361-153547596(-)$1	235	82	107	21.9486
::fffffftttttttttttffffff	chr2:136690261-136690519(-)$1	258	56	81	21.7008
fff[ddddyyyyyyyyyyyyyyyyd	chr3:150176052-150176326(+)$1	274	206	231	19.2491
bb!!ddddtttttttttttdddd22	chr13:53030542-53030876(+)$1	334	223	248	22.8415
iiiiiiiitttttttttttiiiiii	chr1:29485878-29486110(-)$1	232	91	116	23.7372
dd[bbyyyyyyyyyyyyyyyybb]d	chr4:151849636-151849878(-)$1	242	140	165	19.4230
=!!eeeeevvvvvvvvvvvvveeee	chr3:195782047-195782297(-)$1	250	75	100	22.8493
FFFddddvvvvvvvvvvvvvdddd:	chr1:22013590-22013841(-)$1	251	222	247	20.5628
:gggggggtttttttttttgggggg	chr3:42674951-42675234(+)$1	283	70	95	23.1947
gg[a[a[attttttttttta]a]a]	chr6:32943001-32943264(+)$1	263	53	78	23.8449
!gggggggtttttttttttgggggg	chr1:44451016-44451299(+)$1	283	118	143	24.0479
========uuuuuuuuuuuu=====	chr3:52722009-52722252(+)$1	243	57	82	23.7345
[cccyyyyyyyyyyyyyyyyccc]h	chr12:123005800-123006089(-)$1	289	106	131	20.1142
!!ffffffuuuuuuuuuuuufffff	chr5:118437479-118437781(+)$1	302	198	223	23.0492
ggggggguuuuuuuuuuuugggggg	chr21:47690327-47690601(-)$1	274	103	128	23.4443
ffffffvvvvvvvvvvvvvffffff	chr9:128002456-128002752(-)$1	296	164	189	22.2117
FFeeeeeuuuuuuuuuuuueeeeeB	chr3:195791070-195791296(-)$1	226	159	184	21.2490
f[ddddvvvvvvvvvvvvvdddd]f	chr9:86584220-86584455(-)$1	235	144	169	22.0786
dd!!ddddtttttttttttdddd]d	chr8:126017810-126018071(+)$1	261	170	195	23.2974
ggggggguuuuuuuuuuuugggggg	chr3:33866710-33866962(+)$1	252	141	166	23.4443
dd!!ddddwwwwwwwwwwwwwwddd	chr7:129091346-129091592(+)$1	246	139	164	20.4172
========ttttttttttt======	chr10:98290115-98290400(-)$1	285	102	127	24.2456
=ggggggguuuuuuuuuuuuggggg	chr21:34994178-34994467(-)$1	289	102	127	23.5419
"""cccvvvvvvvvvvvvvccc333	chr8:61531039-61531321(+)$1	282	167	192	22.6922
[gggggggtttttttttttgggggg	chr2:38536378-38536673(-)$1	295	267	292	24.0371
dd[dddduuuuuuuuuuuudddd]d	chr6:43594517-43594826(-)$1	309	242	267	22.4894
ffffffvvvvvvvvvvvvvffffff	chr1:206810879-206811137(+)$1	258	195	220	22.2117
ceeeee[atttttttttttaeeeee	chr11:68343270-68343564(+)$1	294	181	206	23.6944
ii"""ccctttttttttttccc444	chr18:9594805-9595154(-)$1	349	31	56	23.4397
dddbb[bbtttttttttttbb]bb]	chr6:36568820-36569106(+)$1	286	53	78	21.1604
gggggggvvvvvvvvvvvvvggggg	chr5:137902558-137902802(-)$1	244	121	146	23.6007
ffffddddtttttttttttdddd::	chr1:144912155-144912407(-)$1	252	198	223	21.0846
gggggggvvvvvvvvvvvvvggggg	chr14:73572503-73572794(+)$1	291	49	74	23.6007
ccc!!ccctttttttttttccc22c	chr9:86587636-86587864(-)$1	228	181	206	23.3276
"""eeeeeuuuuuuuuuuuueeeee	chr16:24807081-24807333(+)$1	252	29	54	23.0637
++++ddddtttttttttttdddd>>	chr1:65890927-65891243(+)$1	316	37	62	20.2559
ggggg[bbtttttttttttbbgggg	chr17:27050447-27050691(+)$1	244	129	154	23.2149
hhhhhhhhuuuuuuuuuuuuhhhhh	chr1:234744034-234744296(-)$1	262	149	174	20.3495
ggg!!ccctttttttttttccc22g	chr9:100774634-100774855(+)$1	221	64	89	23.6603
========uuuuuuuuuuuu=====	chr7:158669199-158669482(+)$1	283	89	114	23.7345
[eeeeeyyyyyyyyyyyyyyyyeee	chr6:43589771-43590029(-)$1	258	10	35	20.4859
gg!!ddddtttttttttttdddd22	chr2:201724299-201724576(-)$1	277	104	129	23.3411
c"""bbvvvvvvvvvvvvvbb4444	chr2:95770340-95770580(-)$1	240	131	156	21.3389
ddd[ddddtttttttttttdddd]d	chr1:46078714-46078980(+)$1	266	211	236	23.0165
:eeeeevvvvvvvvvvvvveeeeee	chrX:48434780-48435035(+)$1	255	142	167	21.5436
ddd[ddddwwwwwwwwwwwwwwddd	chr21:30324449-30324704(-)$1	255	84	109	20.1363
ccceeeeeuuuuuuuuuuuueeeee	chr16:21987451-21987747(+)$1	296	244	269	22.8920
[dddd[bbvvvvvvvvvvvvvbb]d	chr1:47767868-47768167(-)$1	299	227	252	21.3572
::fffffftttttttttttffffff	chr19:16199695-16199986(+)$1	291	127	152	21.7008
dd[eeeeettttttttttteeeeed	chr21:37734316-37734623(+)$1	307	39	64	23.3250
========vvvvvvvvvvvvv====	chr1:24975180-24975498(+)$1	318	207	232	23.2645
ggggggguuuuuuuuuuuugggggg	chr20:42088270-42088564(+)$1	294	124	149	23.4443
##ffffffvvvvvvvvvvvvvffff	chr12:9913207-9913478(-)$1	271	231	256	22.4683
h[ddddvvvvvvvvvvvvvdddd]h	chr1:150940066-150940314(-)$1	248	54	79	21.7805
===[ddddvvvvvvvvvvvvvdddd	chr12:56436036-56436335(+)$1	299	101	126	22.4707
:::eeeeettttttttttteeeee:	chr6:52138012-52138259(-)$1	247	203	228	19.8117

#otherMatches

#Seq PSSM
UGGGGGGUAGGAGAUGUAAGCCCUU	chr16:56970488-56970732(+)$1	244	4	29	22.7480
AAAUUGAUAUACAAAAUUUUCGAUA	chr1:172546811-172547081(+)$1	270	186	211	20.2234
AAUAACAUUAAAUUAGCUUAUGUUU	chr18:2578814-2579058(+)$1	244	70	95	23.3406
AGUAUUUGGCAAAUAUGGACGAAUA	chrX:135961350-135961599(-)$1	249	90	115	23.2963
GAGGAGCUUGCCGUUAAUUGCUUCU	chr12:8075492-8075738(-)$1	246	29	54	21.7315
AAAUUUCGGAAGGCUAGAAACUAGA	chr16:74685676-74685937(-)$1	261	171	196	23.6897
UCUGUAGAUAAGCAUUUUUUCUACA	chr7:156956402-156956688(+)$1	286	176	201	23.1170
AGUGUAUAUAAAAAGUAUGUUUAUA	chr12:57058444-57058729(-)$1	285	173	198	22.5521
UUGCCUGUUUUUUAUUUUUUAGGUA	chr2:153547361-153547596(-)$1	235	82	107	21.9486
UCAAAAUAUUAGUAAAAuuuauuuu	chr2:136690261-136690519(-)$1	258	56	81	21.7008
GAACGAGAAAAUGCACUGUUAAAAU	chr3:150176052-150176326(+)$1	274	206	231	19.2491
CACUUCUGUAAAAUUGUAUCAGAUc	chr13:53030542-53030876(+)$1	334	223	248	22.8415
AUUUAUUUGAACCUUCCAAAGGUGG	chr1:29485878-29486110(-)$1	232	91	116	23.7372
CUAGCUAUAAUUUGACAGUUCGCGA	chr4:151849636-151849878(-)$1	242	140	165	19.4230
UCUUGCUCUUAGAACUCACGUGAGU	chr3:195782047-195782297(-)$1	250	75	100	22.8493
UUGAAGCUUUAGUGUACAGUGCUUU	chr1:22013590-22013841(-)$1	251	222	247	20.5628
AUGAAAUGCAAACAUUAUACAUUUU	chr3:42674951-42675234(+)$1	283	70	95	23.1947
UAGGGGGGgugugugugugugugug	chr6:32943001-32943264(+)$1	263	53	78	23.8449
GGGGUUCUUUGCCCUUCCUGGAGCC	chr1:44451016-44451299(+)$1	283	118	143	24.0479
UUAGAGGUUACAGUUGCUCUACUUC	chr3:52722009-52722252(+)$1	243	57	82	23.7345
AUUCACAGAUAAUGAAGGAAGAAAA	chr12:123005800-123006089(-)$1	289	106	131	20.1142
CUACCAAAACAAAAGAAAAAUUUGG	chr5:118437479-118437781(+)$1	302	198	223	23.0492
UUUCUCUCCUUUAAUUAACAGAGAA	chr21:47690327-47690601(-)$1	274	103	128	23.4443
GUGGUUGAAAAGAAAACUAAACCAU	chr9:128002456-128002752(-)$1	296	164	189	22.2117
AUACAGUUCUAGAUGUUAUACUGUG	chr3:195791070-195791296(-)$1	226	159	184	21.2490
UUUUUCUUUUUUAUAGUGUGAAGCA	chr9:86584220-86584455(-)$1	235	144	169	22.0786
AGAAUCAAUGCAUUUAAAUUUGACC	chr8:126017810-126018071(+)$1	261	170	195	23.2974
UUGUUGCAUGUGAAAAAAAGUGAUA	chr3:33866710-33866962(+)$1	252	141	166	23.4443
GAUGCCCAAAAGGCCUAUAUAAUGG	chr7:129091346-129091592(+)$1	246	139	164	20.4172
AUGUAAGUUUUGAUAAUGUAUUUAU	chr10:98290115-98290400(-)$1	285	102	127	24.2456
GAAAUGAAGAUGAAAAAGGAUUUAU	chr21:34994178-34994467(-)$1	289	102	127	23.5419
GGUAUAUACAUAUAAAUAUUGUUGG	chr8:61531039-61531321(+)$1	282	167	192	22.6922
GUGAUUUAUCUUUCUGCCUUGAAUU	chr2:38536378-38536673(-)$1	295	267	292	24.0371
uucuuucuuuuuuuuuuuugagaug	chr6:43594517-43594826(-)$1	309	242	267	22.4894
CUUCUGAACCACCUCCACCCAGAAG	chr1:206810879-206811137(+)$1	258	195	220	22.2117
UGGGAGACGUUCUGCACAAGCUCCU	chr11:68343270-68343564(+)$1	294	181	206	23.6944
UGAUGUGAUUAUUAUACCUUCAGCC	chr18:9594805-9595154(-)$1	349	31	56	23.4397
UCACGCCAUAAAUACUAAUUGAUGA	chr6:36568820-36569106(+)$1	286	53	78	21.1604
CCAAUGUGGUUAAUAUGUAGACGUU	chr5:137902558-137902802(-)$1	244	121	146	23.6007
CCCUGAUGUCCCAAGCACCCAUCUC	chr1:144912155-144912407(-)$1	252	198	223	21.0846
UUUGUUUACAUUAGAGAAAAAAGCA	chr14:73572503-73572794(+)$1	291	49	74	23.6007
GCAUUUAGUCUAAUAGUCUUUAUUU	chr9:86587636-86587864(-)$1	228	181	206	23.3276
aaaguugcgauaacuaguaagcgac	chr16:24807081-24807333(+)$1	252	29	54	23.0637
UUUUGGCUUUAUUUUUCACAGCUCU	chr1:65890927-65891243(+)$1	316	37	62	20.2559
UCUCUACCCUAGGCCUGAUGGAGAG	chr17:27050447-27050691(+)$1	244	129	154	23.2149
CGGAGAGCAGAGGAAGGGUGGUUCU	chr1:234744034-234744296(-)$1	262	149	174	20.3495
UUAGGAAGAAGAAUUUGGACUUGAU	chr9:100774634-100774855(+)$1	221	64	89	23.6603
ACUUCUUGUAGUAAGUAAAGUAAGA	chr7:158669199-158669482(+)$1	283	89	114	23.7345
AGAGUUGUGUAGAGGAAGAGGAAAU	chr6:43589771-43590029(-)$1	258	10	35	20.4859
UAGAUGAAAUUGUUGAUACUUUAGG	chr2:201724299-201724576(-)$1	277	104	129	23.3411
GAAAGAGGGAAGAAAGAAAUCGAUC	chr2:95770340-95770580(-)$1	240	131	156	21.3389
UUGUUAGCCACUCAGUACUGUUGUC	chr1:46078714-46078980(+)$1	266	211	236	23.0165
GCAGGUAUUAUGACAGUCGACCUGG	chrX:48434780-48435035(+)$1	255	142	167	21.5436
AAACGGAAUAUAAUUUUUUUCUUUC	chr21:30324449-30324704(-)$1	255	84	109	20.1363
cccauauccuaccaccuaaagauau	chr16:21987451-21987747(+)$1	296	244	269	22.8920
AUGCUUUUUACUUGGUUCUCUGACA	chr1:47767868-47768167(-)$1	299	227	252	21.3572
AUAAGACACAAAAAUCCUUUGUCUU	chr19:16199695-16199986(+)$1	291	127	152	21.7008
UUACUGUUGAUUAUAUUGAAAUAGA	chr21:37734316-37734623(+)$1	307	39	64	23.3250
AUUUUUGAAUGGAAAAAAUGCUCGA	chr1:24975180-24975498(+)$1	318	207	232	23.2645
CCUUCAUGUGAUAAAGGUGGUGGAG	chr20:42088270-42088564(+)$1	294	124	149	23.4443
CUUAGAGAAAUAUACUGCUAAUCUC	chr12:9913207-9913478(-)$1	271	231	256	22.4683
UCUGGCAAGGUCAGGUGAGGCCAUG	chr1:150940066-150940314(-)$1	248	54	79	21.7805
UUGUGGCCGGAAAGGGACUGAGGCU	chr12:56436036-56436335(+)$1	299	101	126	22.4707
AACCUUCUACAUGGGACCAAGAAGA	chr6:52138012-52138259(-)$1	247	203	228	19.8117

#DB
((((((((...........))))))	chr16:56970488-56970732(+)$1	1	4	29	22.7480
..(((((............))))).	chr1:172546811-172547081(+)$1	1	186	211	20.2234
((.(((((...........))))).	chr18:2578814-2579058(+)$1	1	70	95	23.3406
(.((((((...........))))))	chrX:135961350-135961599(-)$1	1	90	115	23.2963
(((((((............))))))	chr12:8075492-8075738(-)$1	1	29	54	21.7315
((((((.(............).)))	chr16:74685676-74685937(-)$1	1	171	196	23.6897
))((((((...........))))))	chr7:156956402-156956688(+)$1	1	176	201	23.1170
(.((((((.............))))	chr12:57058444-57058729(-)$1	1	173	198	22.5521
.((((((............))))))	chr2:153547361-153547596(-)$1	1	82	107	21.9486
..((((((...........))))))	chr2:136690261-136690519(-)$1	1	56	81	21.7008
(((.((((................)	chr3:150176052-150176326(+)$1	1	206	231	19.2491
((..((((...........))))..	chr13:53030542-53030876(+)$1	1	223	248	22.8415
((((((((...........))))))	chr1:29485878-29486110(-)$1	1	91	116	23.7372
((.((................)).)	chr4:151849636-151849878(-)$1	1	140	165	19.4230
(..(((((.............))))	chr3:195782047-195782297(-)$1	1	75	100	22.8493
)))((((.............)))).	chr1:22013590-22013841(-)$1	1	222	247	20.5628
.(((((((...........))))))	chr3:42674951-42675234(+)$1	1	70	95	23.1947
((.(.(.(...........).).).	chr6:32943001-32943264(+)$1	1	53	78	23.8449
.(((((((...........))))))	chr1:44451016-44451299(+)$1	1	118	143	24.0479
((((((((............)))))	chr3:52722009-52722252(+)$1	1	57	82	23.7345
.(((................))).)	chr12:123005800-123006089(-)$1	1	106	131	20.1142
..((((((............)))))	chr5:118437479-118437781(+)$1	1	198	223	23.0492
(((((((............))))))	chr21:47690327-47690601(-)$1	1	103	128	23.4443
((((((.............))))))	chr9:128002456-128002752(-)$1	1	164	189	22.2117
))(((((............))))))	chr3:195791070-195791296(-)$1	1	159	184	21.2490
(.((((.............)))).)	chr9:86584220-86584455(-)$1	1	144	169	22.0786
((..((((...........)))).)	chr8:126017810-126018071(+)$1	1	170	195	23.2974
(((((((............))))))	chr3:33866710-33866962(+)$1	1	141	166	23.4443
((..((((..............)))	chr7:129091346-129091592(+)$1	1	139	164	20.4172
((((((((...........))))))	chr10:98290115-98290400(-)$1	1	102	127	24.2456
((((((((............)))))	chr21:34994178-34994467(-)$1	1	102	127	23.5419
...(((.............)))...	chr8:61531039-61531321(+)$1	1	167	192	22.6922
.(((((((...........))))))	chr2:38536378-38536673(-)$1	1	267	292	24.0371
((.((((............)))).)	chr6:43594517-43594826(-)$1	1	242	267	22.4894
((((((.............))))))	chr1:206810879-206811137(+)$1	1	195	220	22.2117
)(((((.(...........))))))	chr11:68343270-68343564(+)$1	1	181	206	23.6944
((...(((...........)))...	chr18:9594805-9595154(-)$1	1	31	56	23.4397
(((((.((...........)).)).	chr6:36568820-36569106(+)$1	1	53	78	21.1604
(((((((.............)))))	chr5:137902558-137902802(-)$1	1	121	146	23.6007
))))((((...........))))..	chr1:144912155-144912407(-)$1	1	198	223	21.0846
(((((((.............)))))	chr14:73572503-73572794(+)$1	1	49	74	23.6007
(((..(((...........)))..)	chr9:86587636-86587864(-)$1	1	181	206	23.3276
...(((((............)))))	chr16:24807081-24807333(+)$1	1	29	54	23.0637
....((((...........))))..	chr1:65890927-65891243(+)$1	1	37	62	20.2559
(((((.((...........))))))	chr17:27050447-27050691(+)$1	1	129	154	23.2149
((((((((............)))))	chr1:234744034-234744296(-)$1	1	149	174	20.3495
(((..(((...........)))..)	chr9:100774634-100774855(+)$1	1	64	89	23.6603
((((((((............)))))	chr7:158669199-158669482(+)$1	1	89	114	23.7345
.(((((................)))	chr6:43589771-43590029(-)$1	1	10	35	20.4859
((..((((...........))))..	chr2:201724299-201724576(-)$1	1	104	129	23.3411
(...((.............))....	chr2:95770340-95770580(-)$1	1	131	156	21.3389
(((.((((...........)))).)	chr1:46078714-46078980(+)$1	1	211	236	23.0165
.(((((.............)))))(	chrX:48434780-48435035(+)$1	1	142	167	21.5436
(((.((((..............)))	chr21:30324449-30324704(-)$1	1	84	109	20.1363
)))(((((............)))))	chr16:21987451-21987747(+)$1	1	244	269	22.8920
.((((.((.............)).)	chr1:47767868-47768167(-)$1	1	227	252	21.3572
..((((((...........))))))	chr19:16199695-16199986(+)$1	1	127	152	21.7008
((.(((((...........))))))	chr21:37734316-37734623(+)$1	1	39	64	23.3250
((((((((.............))))	chr1:24975180-24975498(+)$1	1	207	232	23.2645
(((((((............))))))	chr20:42088270-42088564(+)$1	1	124	149	23.4443
..((((((.............))))	chr12:9913207-9913478(-)$1	1	231	256	22.4683
(.((((.............)))).)	chr1:150940066-150940314(-)$1	1	54	79	21.7805
(((.((((.............))))	chr12:56436036-56436335(+)$1	1	101	126	22.4707
...(((((...........))))).	chr6:52138012-52138259(-)$1	1	203	228	19.8117

#PSSM
g : 0.15	d : 0.14	: : 0.10	= : 0.10	f : 0.07	[ : 0.06	c : 0.06	F : 0.04	b : 0.04	i : 0.03	! : 0.03	" : 0.03	h : 0.03	I : 0.01	a : 0.01	+ : 0.01	# : 0.01	
g : 0.21	d : 0.15	f : 0.09	= : 0.07	: : 0.06	[ : 0.06	F : 0.04	c : 0.04	" : 0.04	e : 0.04	b : 0.03	i : 0.03	! : 0.03	+ : 0.01	h : 0.01	# : 0.01	
f : 0.21	g : 0.18	d : 0.09	e : 0.07	[ : 0.07	! : 0.07	= : 0.07	" : 0.06	c : 0.04	i : 0.01	F : 0.01	+ : 0.01	h : 0.01	: : 0.01	
f : 0.20	e : 0.17	g : 0.17	! : 0.09	d : 0.07	[ : 0.06	= : 0.06	b : 0.03	c : 0.03	" : 0.03	i : 0.01	a : 0.01	+ : 0.01	h : 0.01	
d : 0.23	f : 0.18	e : 0.17	g : 0.17	= : 0.06	b : 0.04	! : 0.03	i : 0.01	[ : 0.01	y : 0.01	c : 0.01	" : 0.01	h : 0.01	
d : 0.21	f : 0.18	e : 0.17	g : 0.15	= : 0.06	c : 0.06	[ : 0.04	y : 0.03	i : 0.01	a : 0.01	h : 0.01	b : 0.01	
d : 0.18	f : 0.15	g : 0.14	e : 0.12	v : 0.10	= : 0.06	[ : 0.04	y : 0.04	c : 0.04	b : 0.04	i : 0.01	h : 0.01	
d : 0.15	v : 0.15	f : 0.12	u : 0.12	e : 0.09	g : 0.06	= : 0.06	a : 0.04	y : 0.04	c : 0.04	b : 0.04	i : 0.01	h : 0.01	
t : 0.40	u : 0.25	v : 0.25	y : 0.06	w : 0.03	
t : 0.40	u : 0.25	v : 0.25	y : 0.06	w : 0.03	
t : 0.40	u : 0.25	v : 0.25	y : 0.06	w : 0.03	
t : 0.40	u : 0.25	v : 0.25	y : 0.06	w : 0.03	
t : 0.40	u : 0.25	v : 0.25	y : 0.06	w : 0.03	
t : 0.40	u : 0.25	v : 0.25	y : 0.06	w : 0.03	
t : 0.40	u : 0.25	v : 0.25	y : 0.06	w : 0.03	
t : 0.40	u : 0.25	v : 0.25	y : 0.06	w : 0.03	
t : 0.40	u : 0.25	v : 0.25	y : 0.06	w : 0.03	
t : 0.40	u : 0.25	v : 0.25	y : 0.06	w : 0.03	
t : 0.40	u : 0.25	v : 0.25	y : 0.06	w : 0.03	
f : 0.14	v : 0.14	d : 0.14	u : 0.12	e : 0.09	g : 0.09	y : 0.06	c : 0.06	b : 0.04	a : 0.03	w : 0.03	i : 0.01	= : 0.01	
f : 0.15	d : 0.15	e : 0.14	g : 0.14	v : 0.09	c : 0.07	y : 0.04	= : 0.04	b : 0.04	w : 0.03	a : 0.01	i : 0.01	] : 0.01	h : 0.01	
f : 0.18	d : 0.17	e : 0.15	g : 0.15	c : 0.07	= : 0.06	] : 0.03	y : 0.03	b : 0.03	w : 0.03	i : 0.01	a : 0.01	h : 0.01	4 : 0.01	
d : 0.20	f : 0.18	e : 0.17	g : 0.17	= : 0.06	b : 0.04	4 : 0.03	2 : 0.03	y : 0.01	i : 0.01	] : 0.01	c : 0.01	3 : 0.01	h : 0.01	
f : 0.18	e : 0.17	g : 0.17	] : 0.12	2 : 0.06	d : 0.06	= : 0.06	4 : 0.03	y : 0.01	i : 0.01	a : 0.01	3 : 0.01	b : 0.01	: : 0.01	> : 0.01	h : 0.01	
f : 0.20	g : 0.18	d : 0.15	e : 0.09	: : 0.06	= : 0.06	] : 0.04	h : 0.04	2 : 0.03	4 : 0.03	i : 0.01	B : 0.01	3 : 0.01	c : 0.01	> : 0.01	

#score	1432.9240445495345
#seq	64
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_transcript_m2_run1.txt

#BEAR
eebb[eeeeeddddmmmmdddd]eeeee]	chr20:60625425-60625691(-)$1	266	201	230	11.4829
ddeeeee"""cccnnnnnccc333eeeee	chr8:121823182-121823441(-)$1	259	194	223	10.0056
ffffff[addddoooooodddd]a]ffff	chr17:70557400-70557665(-)$1	265	105	134	10.3839
!!bb[a[a"""ddddllldddd22a]abb	chr19:57350732-57350993(-)$1	261	161	190	12.6061
hhhh"""cccddddmmmmdddd4444ccc	chr16:50592373-50592606(+)$1	233	182	211	13.8848
ddd"""ccc!!cccmmmmccc22ccc444	chr5:34192839-34193101(-)$1	262	18	47	11.4462
[bb!!bb!!ddddnnnnndddd22bb22b	chrX:73366242-73366604(-)$1	362	108	137	10.2843
hhhhhhh"""ddddmmmmdddd22hhhhh	chr16:31198262-31198487(+)$1	225	74	103	13.4261
dddggggggg[cccmmmmccc22gggggg	chr17:48797162-48797449(+)$1	287	11	40	10.6844
hhhhccc"""ddddllldddd333ccc77	chr3:133472076-133472312(+)$1	236	28	57	12.0765
eeggggggg[ddddmmmmdddd]gggggg	chr1:156341664-156341927(+)$1	263	193	222	13.3927
cc[ffffff!!cccmmmmccc4444ffff	chr11:129871651-129871960(-)$1	309	272	301	11.7966
iiiii$$$$$ddddmmmmdddd666666i	chr11:12729611-12730009(+)$1	398	236	265	12.2982
eeeee"""ddddoooooodddd4444eee	chr17:74730244-74730500(-)$1	256	9	38	11.5396
ee"""ccc"""cccmmmmccc333cccee	chr16:31199358-31199603(+)$1	245	175	204	12.8958
[ccc[ffffffcccmmmmccc333fffff	chr17:6812161-6812480(+)$1	319	12	41	11.1579
beeeee[a!!ddddmmmmdddd22a]eee	chr2:241562834-241563103(+)$1	269	96	125	14.8780
ceeeeeccc!!ddddllldddd]ccc]ee	chr7:47403219-47403482(-)$1	263	176	205	11.6165
b[ffffff!!ddddmmmmdddd22fffff	chr1:44061805-44062092(+)$1	287	221	250	14.1885
gg!!bb####ddddmmmmdddd]bb22gg	chr19:41771242-41771482(+)$1	240	115	144	13.8334
hhhhhhccca[ddddllldddd22a]ccc	chr3:48468860-48469116(-)$1	256	173	202	11.5579
a[ccc!!a"""cccmmmmccc333a22cc	chr1:1206068-1206337(-)$1	269	222	251	13.6508
:eeeee####cccooooooccc4444eee	chr1:228276730-228277019(+)$1	289	112	141	10.0350
d[dddd[ccc[cccmmmmccc22ccc]dd	chr22:20110918-20111194(+)$1	276	121	150	10.4878
!bb[eeeee!!ddddllldddd333eeee	chr19:933298-933546(+)$1	248	24	53	11.9819
ffffff!!bbddddmmmmdddd]bb22ff	chr16:88568099-88568409(+)$1	310	1	30	12.0866
bb!!adddd[ddddmmmmdddd333dddd	chr17:1303071-1303343(-)$1	272	211	240	13.0223
ccc!!bb!!ddddnnnnndddd22bb22c	chr7:99159297-99159554(+)$1	257	19	48	11.0125
g!!ccc$$$$$ddddllldddd22ccc22	chr9:110046071-110046350(+)$1	279	133	162	12.2901
c[ccc####eeeeemmmmeeeee4444cc	chr5:34191256-34191530(-)$1	274	164	193	12.2436
===:eeeee[ddddmmmmdddd333eeee	chr10:43903734-43903989(-)$1	255	101	130	13.1032
ccc[ccc!!eeeeemmmmeeeee22ccc]	chr5:34190695-34190957(-)$1	262	223	252	11.6744
ffffff####ddddmmmmddddffffff]	chr20:60625227-60625479(-)$1	252	24	53	13.4438
[ffffff[a[ddddmmmmdddd]a]ffff	chr19:2270253-2270568(+)$1	315	57	86	13.6778
fffffccc[ddddnnnnndddd333ccc:	chr8:144678726-144678991(-)$1	265	158	187	10.6106
hhhhhhh"""ddddmmmmddddhhhhhhh	chr11:18425214-18425435(+)$1	221	62	91	11.6036
ggg[ffffff[cccmmmmccc333fffff	chr20:60722532-60722785(+)$1	253	116	145	11.4914
ccc[a####eeeeemmmmeeeee22accc	chr7:2675538-2675774(+)$1	236	127	156	11.8979
e####ccc[eeeeemmmmeeeeeccc333	chr11:70924865-70925125(-)$1	260	188	217	10.3178
fff[bb####ddddmmmmdddd22bb]ff	chr12:66225660-66225959(+)$1	299	20	49	14.5434
cddddccc[eeeeemmmmeeeee22ccc]	chr8:123855642-123855958(+)$1	316	227	256	10.5463
ggggg[bb!!ddddmmmmdddd666666b	chr20:60623512-60623788(-)$1	276	24	53	12.2856
ddeeeee[a[ddddmmmmdddda]eeeee	chr20:362229-362561(+)$1	332	89	118	12.9181
!eeeee[a[eeeeemmmmeeeee]a]eee	chr4:1237451-1237716(-)$1	265	63	92	10.9782
a[ccc[bb!!ddddmmmmddddbbccc]a	chr11:65195293-65195508(+)$1	215	147	176	12.9433
ggggg[bb!!ddddmmmmdddd666666b	chr20:60623670-60623946(-)$1	276	182	211	12.2856
d[ffffff!!ddddmmmmddddffffffd	chr15:69110069-69110337(-)$1	268	42	71	12.7116
!!eeeee"""ddddmmmmddddeeeee33	chr19:34875166-34875420(+)$1	254	189	218	13.5384
ggggg$$$$$ddddmmmmddddggggggg	chr16:21519180-21519455(-)$1	275	3	32	13.3861
c[ccc[bb!!cccooooooccc22bbccc	chr8:134308219-134308478(-)$1	259	143	172	10.3260
fdddd"""a[ddddmmmmdddd]a333dd	chr17:75454939-75455217(+)$1	278	130	159	14.2205
cc[dddd[ccccccmmmmccc333ccc]d	chr16:50628579-50628938(+)$1	359	148	177	11.5866

#otherMatches

#Seq PSSM
CAUUGUGGCGUUUUGGGAAGAGUCGUCAG	chr20:60625425-60625691(-)$1	266	201	230	11.4829
UAGCAGGGUUUCCCAGCCGGAUUGCCUGC	chr8:121823182-121823441(-)$1	259	194	223	10.0056
CCCGGUGGGUCUGGGGCAGGACACGGCUG	chr17:70557400-70557665(-)$1	265	105	134	10.3839
GUGACUGGGUAGCAUUAGAUGUGACGAUC	chr19:57350732-57350993(-)$1	261	161	190	12.6061
ugguggaucaccugaggucaggaguuuga	chr16:50592373-50592606(+)$1	233	182	211	13.8848
AGAGCUGUGGGAGCUGGAGCUGGCAUUUC	chr5:34192839-34193101(-)$1	262	18	47	11.4462
gcaaacaugugcuggcaaagugauuggau	chrX:73366242-73366604(-)$1	362	108	137	10.2843
GUAGGGGUAAGACUCAAUAGUCAUCUUUU	chr16:31198262-31198487(+)$1	225	74	103	13.4261
GCGGUGGGACCACGAGAGCGUAAGUCCCG	chr17:48797162-48797449(+)$1	287	11	40	10.6844
gggcggcuuucucccacggagccugccag	chr3:133472076-133472312(+)$1	236	28	57	12.0765
GCCAGAGGGAGGUGCAGCCACUGCCCUUU	chr1:156341664-156341927(+)$1	263	193	222	13.3927
AGAGGGCUGAUGGUGUGCACCUCUCCAGC	chr11:129871651-129871960(-)$1	309	272	301	11.7966
GCAGUGCAGUGCCUGGUAAGGCUUUCAAA	chr11:12729611-12730009(+)$1	398	236	265	12.2982
GCCUGACAACUGCACUUCCAGUCACCCGG	chr17:74730244-74730500(-)$1	256	9	38	11.5396
AGUUUGGAUUUGGUGUUAAUUUUUUUCCU	chr16:31199358-31199603(+)$1	245	175	204	12.8958
auguguuuguggcggugguguuagcaugg	chr17:6812161-6812480(+)$1	319	12	41	11.1579
GAGGGUGCAGCUUUGGGGAGAGAGGGGCC	chr2:241562834-241563103(+)$1	269	96	125	14.8780
AUAGACUGGAAGUUCUGAGAGCACUAUGU	chr7:47403219-47403482(-)$1	263	176	205	11.6165
ggggcucuggggccagugggucaaggggc	chr1:44061805-44062092(+)$1	287	221	250	14.1885
GAUUGAACUAGGGGGCACCCCCAUCUCUC	chr19:41771242-41771482(+)$1	240	115	144	13.8334
AAUUCUGCUCAAGGAAAGUCCUGAGAAGU	chr3:48468860-48469116(-)$1	256	173	202	11.5579
GGAUGGGGGAGUGGGUGAUCGGAACAGUA	chr1:1206068-1206337(-)$1	269	222	251	13.6508
GCAGGAAUUGGGAGGAGGGUCUAAAGUCU	chr1:228276730-228277019(+)$1	289	112	141	10.0350
UGUUCGGGCAGUGUAAGAGCAGAUGUGUG	chr22:20110918-20111194(+)$1	276	121	150	10.4878
AGGAGGAAGUAGGGGCCGCCCCAGCCUUU	chr19:933298-933546(+)$1	248	24	53	11.9819
GCCUCUCCCGCAGGUGCUCUUGAUGAUGG	chr16:88568099-88568409(+)$1	310	1	30	12.0866
ACAACUCGCGGGCCGGGAGGCCGGGGCGA	chr17:1303071-1303343(-)$1	272	211	240	13.0223
UCAAAACACGCAUAAGGCAUGCAAGUACU	chr7:99159297-99159554(+)$1	257	19	48	11.0125
GGUGGCAGAUGGCGUGGAGCGCACGCCCG	chr9:110046071-110046350(+)$1	279	133	162	12.2901
UGGGCACGUGCUGCAGCUGUGGCUGAGGC	chr5:34191256-34191530(-)$1	274	164	193	12.2436
GGUGACGGGAUUCGAGGUCGAGGGGCCCG	chr10:43903734-43903989(-)$1	255	101	130	13.1032
UCUACGGGGCCUAGAGGCCUGGGAUCUGG	chr5:34190695-34190957(-)$1	262	223	252	11.6744
CCUCCUAUGGGGCAGAGGUGCCAGGAGGA	chr20:60625227-60625479(-)$1	252	24	53	13.4438
CGAGCGUGCGCUGCGGGAGCGGGGAGCGC	chr19:2270253-2270568(+)$1	315	57	86	13.6778
CGCCUGGCAGCAGAAGAACUGUGUAGCUA	chr8:144678726-144678991(-)$1	265	158	187	10.6106
CUCUGAAGACUCUGCACCCAGAUUUAGGG	chr11:18425214-18425435(+)$1	221	62	91	11.6036
AUAAUAGCAGUGGUGUCUGCCUGUCUGCU	chr20:60722532-60722785(+)$1	253	116	145	11.4914
ggcacugugccagcccaggcuggauggcc	chr7:2675538-2675774(+)$1	236	127	156	11.8979
aacuagccagcucuggaaggggcggucuc	chr11:70924865-70925125(-)$1	260	188	217	10.3178
UGAGUUAAGGAAAGGUAACUUUGGAAGUU	chr12:66225660-66225959(+)$1	299	20	49	14.5434
UGGGGAGACCCCACUUUAGUGGGUUUCUG	chr8:123855642-123855958(+)$1	316	227	256	10.5463
CAGGGACCGAGGUGGGCACGCCAGGAGAG	chr20:60623512-60623788(-)$1	276	24	53	12.2856
GGGCUGGGCACUUGGUGGCAGGGGUUGGC	chr20:362229-362561(+)$1	332	89	118	12.9181
UGGGCUGAGAGCCGUGUGCGGCUGUGAGU	chr4:1237451-1237716(-)$1	265	63	92	10.9782
GAGGCCGACUGCUGAAGACAGCUCGCCAC	chr11:65195293-65195508(+)$1	215	147	176	12.9433
CAGGGACCGAGGUGGGCACGCCAGGAGAG	chr20:60623670-60623946(-)$1	276	182	211	12.2856
GCGCGCCUGUGGCACGACUGCCGGGCGCC	chr15:69110069-69110337(-)$1	268	42	71	12.7116
GGGUAGAGUUUGUCAGGUGACAUCUAUGA	chr19:34875166-34875420(+)$1	254	189	218	13.5384
UCUCUCUGUGGCCAGCAAUGGUGGGGAGG	chr16:21519180-21519455(-)$1	275	3	32	13.3861
UGUCACGCCUCUGUCAAAUUAGUAGCUGG	chr8:134308219-134308478(-)$1	259	143	172	10.3260
CGUGGGGACAGAGGAGGGCCUUGGGGGCC	chr17:75454939-75455217(+)$1	278	130	159	14.2205
ccggggggaucugcacgugcacacggugc	chr16:50628579-50628938(+)$1	359	148	177	11.5866

#DB
((((.(((((((((....)))).))))).	chr20:60625425-60625691(-)$1	1	201	230	11.4829
(((((((...(((.....)))...)))))	chr8:121823182-121823441(-)$1	1	194	223	10.0056
((((((.(((((......)))).).))))	chr17:70557400-70557665(-)$1	1	105	134	10.3839
..((.(.(...((((...))))..).)))	chr19:57350732-57350993(-)$1	1	161	190	12.6061
((((...(((((((....))))....)))	chr16:50592373-50592606(+)$1	1	182	211	13.8848
(((...(((..(((....)))..)))...	chr5:34192839-34193101(-)$1	1	18	47	11.4462
.((..((..((((.....))))..))..)	chrX:73366242-73366604(-)$1	1	108	137	10.2843
(((((((...((((....))))..)))))	chr16:31198262-31198487(+)$1	1	74	103	13.4261
)))(((((((.(((....)))..))))))	chr17:48797162-48797449(+)$1	1	11	40	10.6844
(((((((...((((...))))...)))..	chr3:133472076-133472312(+)$1	1	28	57	12.0765
))(((((((.((((....)))).))))))	chr1:156341664-156341927(+)$1	1	193	222	13.3927
((.((((((..(((....)))....))))	chr11:129871651-129871960(-)$1	1	272	301	11.7966
(((((.....((((....))))......)	chr11:12729611-12730009(+)$1	1	236	265	12.2982
(((((...((((......))))....)))	chr17:74730244-74730500(-)$1	1	9	38	11.5396
((...(((...(((....)))...)))))	chr16:31199358-31199603(+)$1	1	175	204	12.8958
.(((.(((((((((....)))...)))))	chr17:6812161-6812480(+)$1	1	12	41	11.1579
)(((((.(..((((....))))..).)))	chr2:241562834-241563103(+)$1	1	96	125	14.8780
)((((((((..((((...)))).))).))	chr7:47403219-47403482(-)$1	1	176	205	11.6165
(.((((((..((((....))))..)))))	chr1:44061805-44062092(+)$1	1	221	250	14.1885
((..((....((((....)))).))..))	chr19:41771242-41771482(+)$1	1	115	144	13.8334
((((((((((.((((...))))..).)))	chr3:48468860-48469116(-)$1	1	173	202	11.5579
(.(((..(...(((....)))...)..))	chr1:1206068-1206337(-)$1	1	222	251	13.6508
.(((((....(((......)))....)))	chr1:228276730-228277019(+)$1	1	112	141	10.0350
(.((((.(((.(((....)))..))).))	chr22:20110918-20111194(+)$1	1	121	150	10.4878
.((.(((((..((((...))))...))))	chr19:933298-933546(+)$1	1	24	53	11.9819
((((((..((((((....)))).))..))	chr16:88568099-88568409(+)$1	1	1	30	12.0866
((..(((((.((((....))))...))))	chr17:1303071-1303343(-)$1	1	211	240	13.0223
(((..((..((((.....))))..))..)	chr7:99159297-99159554(+)$1	1	19	48	11.0125
(..(((.....((((...))))..)))..	chr9:110046071-110046350(+)$1	1	133	162	12.2901
(.(((....(((((....)))))....))	chr5:34191256-34191530(-)$1	1	164	193	12.2436
))).(((((.((((....))))...))))	chr10:43903734-43903989(-)$1	1	101	130	13.1032
(((.(((..(((((....)))))..))).	chr5:34190695-34190957(-)$1	1	223	252	11.6744
((((((....((((....)))))))))).	chr20:60625227-60625479(-)$1	1	24	53	13.4438
.((((((.(.((((....)))).).))))	chr19:2270253-2270568(+)$1	1	57	86	13.6778
)))))(((.((((.....))))...))).	chr8:144678726-144678991(-)$1	1	158	187	10.6106
(((((((...((((....)))))))))))	chr11:18425214-18425435(+)$1	1	62	91	11.6036
(((.((((((.(((....)))...)))))	chr20:60722532-60722785(+)$1	1	116	145	11.4914
(((.(....(((((....)))))..))))	chr7:2675538-2675774(+)$1	1	127	156	11.8979
(....(((.(((((....))))))))...	chr11:70924865-70925125(-)$1	1	188	217	10.3178
(((.((....((((....))))..)).))	chr12:66225660-66225959(+)$1	1	20	49	14.5434
)(((((((.(((((....)))))..))).	chr8:123855642-123855958(+)$1	1	227	256	10.5463
(((((.((..((((....))))......)	chr20:60623512-60623788(-)$1	1	24	53	12.2856
))(((((.(.((((....))))).)))))	chr20:362229-362561(+)$1	1	89	118	12.9181
.(((((.(.(((((....))))).).)))	chr4:1237451-1237716(-)$1	1	63	92	10.9782
(.(((.((..((((....))))))))).)	chr11:65195293-65195508(+)$1	1	147	176	12.9433
(((((.((..((((....))))......)	chr20:60623670-60623946(-)$1	1	182	211	12.2856
(.((((((..((((....)))))))))))	chr15:69110069-69110337(-)$1	1	42	71	12.7116
..(((((...((((....)))))))))..	chr19:34875166-34875420(+)$1	1	189	218	13.5384
(((((.....((((....)))))))))))	chr16:21519180-21519455(-)$1	1	3	32	13.3861
(.(((.((..(((......)))..)))))	chr8:134308219-134308478(-)$1	1	143	172	10.3260
(((((...(.((((....)))).)...))	chr17:75454939-75455217(+)$1	1	130	159	14.2205
((.((((.((((((....)))...))).)	chr16:50628579-50628938(+)$1	1	148	177	11.5866

#PSSM
c : 0.17	d : 0.11	f : 0.11	g : 0.11	e : 0.09	h : 0.09	! : 0.07	[ : 0.05	b : 0.05	a : 0.03	i : 0.01	: : 0.01	= : 0.01	
e : 0.15	[ : 0.13	d : 0.11	f : 0.11	c : 0.11	h : 0.09	g : 0.09	! : 0.05	b : 0.05	i : 0.01	= : 0.01	# : 0.01	
e : 0.15	f : 0.15	c : 0.15	h : 0.09	d : 0.09	g : 0.09	b : 0.07	! : 0.05	[ : 0.03	i : 0.01	" : 0.01	= : 0.01	# : 0.01	
e : 0.15	f : 0.15	c : 0.11	h : 0.09	g : 0.09	[ : 0.09	! : 0.07	d : 0.07	b : 0.03	" : 0.03	i : 0.01	: : 0.01	# : 0.01	
e : 0.19	f : 0.17	c : 0.13	g : 0.09	d : 0.07	[ : 0.05	" : 0.05	h : 0.05	! : 0.03	b : 0.03	a : 0.03	i : 0.01	# : 0.01	
e : 0.19	f : 0.17	c : 0.13	" : 0.07	b : 0.07	[ : 0.07	h : 0.05	d : 0.05	g : 0.03	$ : 0.03	# : 0.03	a : 0.01	! : 0.01	
c : 0.17	e : 0.11	b : 0.11	f : 0.11	# : 0.11	[ : 0.09	" : 0.05	$ : 0.05	h : 0.03	g : 0.03	! : 0.03	d : 0.03	
c : 0.17	" : 0.13	# : 0.11	a : 0.09	f : 0.09	! : 0.07	b : 0.07	e : 0.05	$ : 0.05	[ : 0.05	g : 0.03	d : 0.01	
! : 0.19	" : 0.15	c : 0.11	# : 0.11	[ : 0.07	e : 0.05	d : 0.05	f : 0.05	$ : 0.05	a : 0.05	g : 0.03	b : 0.01	
! : 0.21	" : 0.15	e : 0.13	[ : 0.11	d : 0.09	# : 0.07	c : 0.05	$ : 0.05	f : 0.03	g : 0.01	a : 0.01	b : 0.01	
d : 0.55	e : 0.11	c : 0.07	! : 0.07	[ : 0.07	" : 0.05	f : 0.01	$ : 0.01	
d : 0.65	c : 0.23	e : 0.11	
d : 0.61	c : 0.23	e : 0.11	o : 0.03	
d : 0.55	c : 0.17	e : 0.11	n : 0.07	o : 0.07	
m : 0.73	d : 0.09	n : 0.07	o : 0.07	l : 0.01	
m : 0.73	l : 0.11	n : 0.07	o : 0.07	
m : 0.73	l : 0.11	n : 0.07	o : 0.07	
m : 0.73	l : 0.09	n : 0.07	o : 0.07	d : 0.01	
d : 0.65	c : 0.19	e : 0.11	o : 0.03	
d : 0.65	c : 0.23	e : 0.11	
d : 0.65	c : 0.23	e : 0.11	
d : 0.63	3 : 0.13	e : 0.11	2 : 0.05	c : 0.03	4 : 0.01	
2 : 0.24	3 : 0.21	] : 0.15	e : 0.13	4 : 0.07	6 : 0.05	f : 0.03	h : 0.01	a : 0.01	b : 0.01	g : 0.01	
2 : 0.24	3 : 0.21	4 : 0.09	c : 0.07	a : 0.05	g : 0.05	6 : 0.05	b : 0.05	e : 0.03	f : 0.03	] : 0.03	h : 0.01	
c : 0.17	b : 0.11	a : 0.09	4 : 0.09	f : 0.09	3 : 0.09	e : 0.07	g : 0.05	6 : 0.05	2 : 0.05	] : 0.03	h : 0.03	
c : 0.23	f : 0.15	e : 0.11	] : 0.07	4 : 0.07	b : 0.07	g : 0.05	6 : 0.05	2 : 0.05	h : 0.03	d : 0.01	a : 0.01	3 : 0.01	
c : 0.23	e : 0.19	f : 0.15	2 : 0.09	g : 0.05	6 : 0.05	] : 0.05	4 : 0.03	h : 0.03	3 : 0.03	a : 0.01	d : 0.01	
e : 0.21	f : 0.19	c : 0.17	g : 0.07	2 : 0.05	6 : 0.05	d : 0.05	h : 0.03	3 : 0.03	] : 0.03	b : 0.01	4 : 0.01	7 : 0.01	
e : 0.19	f : 0.15	c : 0.13	d : 0.09	] : 0.07	b : 0.07	g : 0.07	h : 0.03	3 : 0.03	4 : 0.01	7 : 0.01	i : 0.01	2 : 0.01	: : 0.01	a : 0.01	

#score	632.3392738121677
#seq	52
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431WWR_WDR43_UTR_m3_run1.txt

#BEAR
[ddddmmmmddddc	chr3:184044922-184045214(+)$1	292	182	196	6.4636
[ddddmmmmddddc	chr1:19444252-19444503(-)$1	251	217	231	6.4636
eeeeeooooooeee	chr12:26985874-26986096(-)$1	222	74	88	8.4070
eeeeemmmmeeeee	chr9:117050890-117051131(+)$1	241	124	138	10.4467
eeeeeooooooeee	chr4:174253031-174253318(-)$1	287	174	188	8.4070
:eeeeellleeeee	chr14:102549353-102549619(-)$1	266	137	151	8.0444
eeeeemmmmeeeee	chr9:117073829-117074115(+)$1	286	58	72	10.4467
eeeeemmmmeeeee	chr2:62932849-62933153(+)$1	304	257	271	10.4467
eeeeemmmmeeeee	chr11:130011740-130012027(+)$1	287	213	227	10.4467
eeeeemmmmeeeee	chr16:30087575-30087857(+)$1	282	82	96	10.4467
[eeeeellleeeee	chr12:112756954-112757265(-)$1	311	115	129	9.2845
eeeeemmmmeeeee	chr8:124381215-124381517(-)$1	302	245	259	10.4467
[ddddmmmmddddd	chr16:28847471-28847734(+)$1	263	134	148	6.5713
eeeeemmmmeeeee	chr17:75484225-75484478(+)$1	253	186	200	10.4467
eeeeennnnneeee	chr20:34309609-34309854(-)$1	245	126	140	8.4300
eeeeemmmmeeeee	chr3:48456292-48456542(-)$1	250	166	180	10.4467
eeeeemmmmeeeee	chr17:80193762-80194054(+)$1	292	230	244	10.4467
eeeeennnnneeee	chr16:70696474-70696723(-)$1	249	164	178	8.4300
[eeeeellleeeee	chr9:131451536-131451809(+)$1	273	232	246	9.2845
[eeeeellleeeee	chr9:117014773-117015022(+)$1	249	135	149	9.2845
eeeeemmmmeeeee	chr21:46915219-46915445(+)$1	226	2	16	10.4467
eeeeemmmmeeeee	chr11:67810715-67811052(+)$1	337	164	178	10.4467
eeeeennnnneeee	chr1:245027514-245027764(-)$1	250	84	98	8.4300

#otherMatches

#Seq PSSM
CGCGGACACCUGCU	chr3:184044922-184045214(+)$1	292	182	196	6.4636
AGGCCAAUAGGUCC	chr1:19444252-19444503(-)$1	251	217	231	6.4636
UGGAGAGAAAACUU	chr12:26985874-26986096(-)$1	222	74	88	8.4070
CCGGGAGACCCUGG	chr9:117050890-117051131(+)$1	241	124	138	10.4467
AUACUAGCUUCAGU	chr4:174253031-174253318(-)$1	287	174	188	8.4070
CCuggaacuuccag	chr14:102549353-102549619(-)$1	266	137	151	8.0444
GUAGAGAGAUUUAC	chr9:117073829-117074115(+)$1	286	58	72	10.4467
gcggcugcugcugc	chr2:62932849-62933153(+)$1	304	257	271	10.4467
CCACGGGAUCGUGG	chr11:130011740-130012027(+)$1	287	213	227	10.4467
GGGGCGGCGGCCCC	chr16:30087575-30087857(+)$1	282	82	96	10.4467
CUCAAUGGAAUUGA	chr12:112756954-112757265(-)$1	311	115	129	9.2845
UUAUGACAACAUAA	chr8:124381215-124381517(-)$1	302	245	259	10.4467
UGUCCCACAGGGCG	chr16:28847471-28847734(+)$1	263	134	148	6.5713
CCUCCAGGGGGAGG	chr17:75484225-75484478(+)$1	253	186	200	10.4467
UGUGGGCUCAUUAC	chr20:34309609-34309854(-)$1	245	126	140	8.4300
GGACCCCUGGGUCC	chr3:48456292-48456542(-)$1	250	166	180	10.4467
GCCUUCCCCAAGGC	chr17:80193762-80194054(+)$1	292	230	244	10.4467
GUCCUAUGGCAGGA	chr16:70696474-70696723(-)$1	249	164	178	8.4300
GCGCGUGUGGCGUG	chr9:131451536-131451809(+)$1	273	232	246	9.2845
GGACCCAAGGGGUC	chr9:117014773-117015022(+)$1	249	135	149	9.2845
CUGGUAAUCAUCAG	chr21:46915219-46915445(+)$1	226	2	16	10.4467
AGAGCGCCUGCUCU	chr11:67810715-67811052(+)$1	337	164	178	10.4467
GCCGCCACCAGUGG	chr1:245027514-245027764(-)$1	250	84	98	8.4300

#DB
.((((....)))))	chr3:184044922-184045214(+)$1	1	182	196	6.4636
.((((....)))))	chr1:19444252-19444503(-)$1	1	217	231	6.4636
(((((......)))	chr12:26985874-26986096(-)$1	1	74	88	8.4070
(((((....)))))	chr9:117050890-117051131(+)$1	1	124	138	10.4467
(((((......)))	chr4:174253031-174253318(-)$1	1	174	188	8.4070
.(((((...)))))	chr14:102549353-102549619(-)$1	1	137	151	8.0444
(((((....)))))	chr9:117073829-117074115(+)$1	1	58	72	10.4467
(((((....)))))	chr2:62932849-62933153(+)$1	1	257	271	10.4467
(((((....)))))	chr11:130011740-130012027(+)$1	1	213	227	10.4467
(((((....)))))	chr16:30087575-30087857(+)$1	1	82	96	10.4467
.(((((...)))))	chr12:112756954-112757265(-)$1	1	115	129	9.2845
(((((....)))))	chr8:124381215-124381517(-)$1	1	245	259	10.4467
.((((....)))))	chr16:28847471-28847734(+)$1	1	134	148	6.5713
(((((....)))))	chr17:75484225-75484478(+)$1	1	186	200	10.4467
(((((.....))))	chr20:34309609-34309854(-)$1	1	126	140	8.4300
(((((....)))))	chr3:48456292-48456542(-)$1	1	166	180	10.4467
(((((....)))))	chr17:80193762-80194054(+)$1	1	230	244	10.4467
(((((.....))))	chr16:70696474-70696723(-)$1	1	164	178	8.4300
.(((((...)))))	chr9:131451536-131451809(+)$1	1	232	246	9.2845
.(((((...)))))	chr9:117014773-117015022(+)$1	1	135	149	9.2845
(((((....)))))	chr21:46915219-46915445(+)$1	1	2	16	10.4467
(((((....)))))	chr11:67810715-67811052(+)$1	1	164	178	10.4467
(((((.....))))	chr1:245027514-245027764(-)$1	1	84	98	8.4300

#PSSM
e : 0.69	[ : 0.26	: : 0.04	
e : 0.86	d : 0.13	
e : 0.86	d : 0.13	
e : 0.86	d : 0.13	
e : 0.86	d : 0.13	
m : 0.60	e : 0.17	n : 0.13	o : 0.08	
m : 0.60	l : 0.17	n : 0.13	o : 0.08	
m : 0.60	l : 0.17	n : 0.13	o : 0.08	
m : 0.60	l : 0.17	n : 0.13	o : 0.08	
e : 0.65	d : 0.13	n : 0.13	o : 0.08	
e : 0.78	d : 0.13	o : 0.08	
e : 0.86	d : 0.13	
e : 0.86	d : 0.13	
e : 0.86	c : 0.08	d : 0.04	

#score	212.4157808771217
#seq	23
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_UTR_m2_run1.txt

#BEAR
$ggggggg!!ddddmmmmdddd]ggggggg22d	chr11:9335978-9336286(-)$1	308	58	91	11.3200
ee!!ccc[ccc[bbmmmmbb]cccccc333eee	chr11:64949279-64949544(+)$1	265	138	171	15.4618
d!!ffffff!!cccmmmmccc]ffffff]dddd	chr4:17812498-17812803(+)$1	305	63	96	11.6961
"bb[ggggggg[bbmmmmbb]gggggggbbeee	chr5:133707165-133707394(+)$1	229	189	222	14.4933
ggg[a[cccbb[bbmmmmbb]bb]ccc]a]ggg	chr15:42867759-42868022(+)$1	263	27	60	14.6167
cc####dddd!!bbmmmmbb22dddd4444ccc	chr6:47445594-47445907(+)$1	313	191	224	14.5423
bb!!bb[ccc[cccmmmmccc]ccc]bb22bb]	chr16:75018806-75019087(-)$1	281	180	213	11.9409
fff!!ccc[a[cccmmmmccc]a]ccc333fff	chr1:109825592-109825852(-)$1	260	10	43	13.3995
[a"""bbgggggggmmmmggggggg]bb22a]b	chr7:150756615-150756911(+)$1	296	37	70	12.6877
ffff!!dddd!!bbmmmmbb22ddddffffff]	chr3:38206982-38207215(+)$1	233	78	111	13.3501
eeeeggggggg[bbmmmmbb]ggggggg]eeee	chr2:46926276-46926541(+)$1	265	130	163	15.0968
dddd!!ccc!!cccmmmmccc22ccc]dddd]e	chr3:37284660-37284985(+)$1	325	143	176	11.7313
ff[a[bb[ccc[bbmmmmbb]ccc]bb22a]ff	chr16:30662130-30662417(+)$1	287	154	187	13.9275
c!!eeeeeccc[bbmmmmbb]ccc22eeeeecc	chr18:43678109-43678357(-)$1	248	140	173	13.9991
ddd[bbeeeee!!ammmma22eeeee]bb22dd	chr8:145650730-145651010(-)$1	280	123	156	11.7222
eeeee[bbddddbbmmmmbb]dddd]bb]eeee	chr6:166755853-166756149(-)$1	296	17	50	12.5494
eeeee[eeeee[bbmmmmbbeeeee]eeeee:a	chr19:1605261-1605549(-)$1	288	57	90	12.6238
gggggg[ccc[cccmmmmccc]cccggggggg:	chr11:67810665-67810942(+)$1	277	160	193	12.6316
cc!!eeeeebb[bbmmmmbb]bb]eeeee22cc	chr22:20105341-20105574(+)$1	233	147	180	13.6222
eee"""bbccc[bbmmmmbb]ccc]bbeeeee]	chr2:28974739-28975051(+)$1	312	128	161	13.8844
""ddddeeeee[bbmmmmbb]eeeee]dddd]e	chr7:104654741-104655015(+)$1	274	134	167	13.4764
ggg[==========mmmm==========>>>>>	chr10:7830054-7830326(+)$1	272	53	86	13.6725
eeeccc[a[eeeeemmmmeeeee]a]ccc]eee	chr3:197676964-197677212(+)$1	248	194	227	11.1395
a"""eeeee!!cccmmmmccc]eeeee4444a]	chr7:154794540-154794786(-)$1	246	10	43	13.2928
ggggggggggggggmmmmggggggg22gggggg	chr12:125398683-125398946(-)$1	263	170	203	13.0886
dd[bb[adddd[bbmmmmbb22dddd]a]bb]d	chr9:101558621-101558914(-)$1	293	101	134	13.1818
==============mmmm===============	chr21:38445482-38445750(+)$1	268	118	151	14.9875
c[ccc[eeeeecccmmmmccc]eeeee]ccc22	chr4:56262028-56262277(+)$1	249	82	115	12.5032
ffff"""dddd[bbmmmmbb]dddd333fffff	chr19:9938497-9938778(+)$1	281	241	274	14.2337
ddd[ggggggg[bbmmmmbb]ggggggg]dddd	chr7:97498360-97498604(-)$1	244	47	80	15.0039
:gggggggeeeeeammmma]eeeee]ggggggg	chr9:91926024-91926276(+)$1	252	67	100	11.9074
fffff!!ccc[cccmmmmccc]cccffffffbb	chr21:47878917-47879215(+)$1	298	89	122	11.8755
ff"""eeeee!!bbmmmmbb22eeeeeffffff	chr19:56166205-56166472(+)$1	267	229	262	14.3504
===========!!ammmma22===========f	chr8:17941466-17941707(-)$1	241	42	75	14.9813
========####bbmmmmbb333==========	chr6:47445514-47445792(+)$1	278	45	78	16.1282
[gggggggeeeeeammmma]eeeee]ggggggg	chr9:91926080-91926310(+)$1	230	11	44	13.0450
f[bbeeeee"""bbmmmmbb]eeeee]bb]fff	chr19:49990766-49991003(+)$1	237	95	128	13.6499
iiiiiieeeee[bbmmmmbb]eeeee]iiiiii	chr15:91537544-91537831(-)$1	287	92	125	15.4929
ggg$$$$$ffffffmmmmffffffggggggg33	chr8:87354874-87355138(+)$1	264	174	207	11.3916
========[bb[bbmmmmbb]bb]=========	chr19:572481-572715(+)$1	234	3	36	15.6223
!ccc[a!!ffffffmmmmffffff]a]ccc22g	chr16:88729360-88729637(-)$1	277	67	100	11.5578
h[a####gggggggmmmmggggggg22a]hhhh	chr6:32095846-32096103(-)$1	257	38	71	12.7299
[a[bb!!a[bb[bbmmmmbb]bb]a22bb]a]f	chr10:101379907-101380260(-)$1	353	115	148	13.7220
hhhh"""cccddddmmmmdddd333ccc333hh	chr21:35287924-35288197(-)$1	273	124	157	11.2195
"cccggggggg[bbmmmmbbggggggg22ccc3	chr5:43121610-43121928(+)$1	318	6	39	14.9287
c[ggggggg[bboooooobb]ggggggg]cccA	chr3:138553461-138553737(-)$1	276	229	262	10.2225
d"""iiiiiiiiinnnnniiiiiiiii333ddd	chr7:102119210-102119445(-)$1	235	158	191	10.1324
c[ccc[bb[ccc[ammmmaccc]bbccc]cccf	chr1:894494-894738(-)$1	244	41	74	11.9919
ccc####eeeeebbmmmmbb]eeeee]ccc]bb	chr17:43024913-43025181(-)$1	268	227	260	14.4798
"""bb"""ccc!!ammmma22ccc22bb333dd	chr7:99686488-99686804(+)$1	316	157	190	13.0063

#otherMatches

#Seq PSSM
ACUGGGCCGGCGCGAGCACGCGAGGCUCGGGGG	chr11:9335978-9336286(-)$1	308	58	91	11.3200
UGCCCUGAGCUGCCACCGGGAAGCCAGCCUCAG	chr11:64949279-64949544(+)$1	265	138	171	15.4618
AAUUAUUUGAACGUUCGAGCGGUAAAUACUCCC	chr4:17812498-17812803(+)$1	305	63	96	11.6961
AUGACGGCCCCUCAAAGCUGCGGGGCUGCAGGG	chr5:133707165-133707394(+)$1	229	189	222	14.4933
CGCGCGGCGGCGUCCCCAGAGGCGCGUGGGGCG	chr15:42867759-42868022(+)$1	263	27	60	14.6167
UCGAGGGCCGCGCUGAAGAGACUGGUAGGAGAG	chr6:47445594-47445907(+)$1	313	191	224	14.5423
GCGAUGGAGCAGCGAAAACGUGGUUGUAGAGUU	chr16:75018806-75019087(-)$1	281	180	213	11.9409
ACCAAUCACGGUGCGCGUGUGGCUUGAGUAGGU	chr1:109825592-109825852(-)$1	260	10	43	13.3995
GCGCACGGUgcgccggggggcgcgcacgcaggg	chr7:150756615-150756911(+)$1	296	37	70	12.6877
CAGAGGGGCUGGGCCCAGGCAAAGCUUCUGUCG	chr3:38206982-38207215(+)$1	233	78	111	13.3501
CCGGCGGAGCUGGGGUCCCCGGGCUCCGUCCGG	chr2:46926276-46926541(+)$1	265	130	163	15.0968
GCUGGAUGGGGGGCCGAGGCCAGCCAGUGGCAC	chr3:37284660-37284985(+)$1	325	143	176	11.7313
UUGGAGUGAAGAGGGUAUCUGCUUGACAGUGGA	chr16:30662130-30662417(+)$1	287	154	187	13.9275
CCUGCGGAGUAACUGCAAAGAUGCUGUCCGUGC	chr18:43678109-43678357(-)$1	248	140	173	13.9991
GGCAGAGGCGCAGCUCCUGGGGUGUCAUCCGGC	chr8:145650730-145651010(-)$1	280	123	156	11.7222
GGCUGGUGAGCAUGCGCGCAUUGCUACGGCGGC	chr6:166755853-166756149(-)$1	296	17	50	12.5494
gcgcgcgugcgcgccgcggccgcgccUGCGCAG	chr19:1605261-1605549(-)$1	288	57	90	12.6238
CGUGGCCGCCAGCUUUGUGGCAGGUGCCGUGGA	chr11:67810665-67810942(+)$1	277	160	193	12.6316
GGUGCGGGCGGCGGGUUUCCUCCGGCUCGGCCC	chr22:20105341-20105574(+)$1	233	147	180	13.6222
GUUGGAGCCGGGGUCGAAACGCCGCGUGACUUG	chr2:28974739-28975051(+)$1	312	128	161	13.8844
CCGCAGUGGCUGCUGUCGGGGGGUCGCCUGUUC	chr7:104654741-104655015(+)$1	274	134	167	13.4764
GGGAGCUUCGGCGCAUGCGCGCUGAGGCCUGCC	chr10:7830054-7830326(+)$1	272	53	86	13.6725
GGCGAGUCGCCGGUGCGUAUCGGAGUCUCUGCC	chr3:197676964-197677212(+)$1	248	194	227	11.1395
gauucgcaggaccgggcccgggcugcgcgggca	chr7:154794540-154794786(-)$1	246	10	43	13.2928
UUGUCGUCUGUUGCGGGGGCGGCAGUUAUGGCG	chr12:125398683-125398946(-)$1	263	170	203	13.0886
cggcggggcggacgggagcgggccgcgcguggc	chr9:101558621-101558914(-)$1	293	101	134	13.1818
gcggcggcggcggcggcUGCUGCUGCUGCUGCC	chr21:38445482-38445750(+)$1	268	118	151	14.9875
GAGGCAGCUGGCUGACUCCAGUUUAGCCGCCGC	chr4:56262028-56262277(+)$1	249	82	115	12.5032
AGGUGAGGCCAGGGAGUUUUGUGGCAGGGCUUU	chr19:9938497-9938778(+)$1	281	241	274	14.2337
CAAGAUUUAAUGCAGAGUUGGAUUGGAUAUUGA	chr7:97498360-97498604(-)$1	244	47	80	15.0039
AUCGUUGGGACUGCGGUCGUUAGUCUCCGGCGA	chr9:91926024-91926276(+)$1	252	67	100	11.9074
CGGUUCCAGCCUCUGCCCGGACGCUAGCCGGCC	chr21:47878917-47879215(+)$1	298	89	122	11.8755
CGAAAGCUGCACAGGGCCCUACGCGGCCGCCUC	chr19:56166205-56166472(+)$1	267	229	262	14.3504
GCGGGUCACGCGGCGGAGGGGGCGUGGCCUGCC	chr8:17941466-17941707(-)$1	241	42	75	14.9813
CCUUUUCUAACUGCGAGUGCUAAGGAAGAGGCG	chr6:47445514-47445792(+)$1	278	45	78	16.1282
AUCGUUGGGACUGCGGUCGUUAGUCUCCGGCGA	chr9:91926080-91926310(+)$1	230	11	44	13.0450
CUCCUUUUCCAAGCGGCUGCCGAAGAUGGCGGA	chr19:49990766-49991003(+)$1	237	95	128	13.6499
GUGACAUCGCCGGUGUUUGCGGGUGGUUGUUGC	chr15:91537544-91537831(-)$1	287	92	125	15.4929
GCCUGCUGCGAGAUGGCGAUCUUGGGCGCGGAA	chr8:87354874-87355138(+)$1	264	174	207	11.3916
CGGGGCGACCGGCGUCCCCGGCGCUCGCCCCGC	chr19:572481-572715(+)$1	234	3	36	15.6223
GCGCGUGAGGAGGCAGAGGCCUCUGGGGUGGGA	chr16:88729360-88729637(-)$1	277	67	100	11.5578
UGAAAGAGUCAACUGAUUAGUUGGUGAUGGGGA	chr6:32095846-32096103(-)$1	257	38	71	12.7299
gcggcagugguggcagcggcggcggGGGUGGGC	chr10:101379907-101380260(-)$1	353	115	148	13.7220
GAGAAGAUGGCUGCCCCAGCAGUGUCCGGGCUC	chr21:35287924-35288197(-)$1	273	124	157	11.2195
CGGUGUGCGUCGACGUAAGUGACGCGCAAGCCU	chr5:43121610-43121928(+)$1	318	6	39	14.9287
GGCGCGGCUGAGGGGCGGCUGGGUCGCGGCGCC	chr3:138553461-138553737(-)$1	276	229	262	10.2225
CGAGUCGUUCUUGCUCUUCGAGGGCGAGAAGAA	chr7:102119210-102119445(-)$1	235	158	191	10.1324
ggggccugggcggCGGAAGUGCGCAGCCGCGCG	chr1:894494-894738(-)$1	244	41	74	11.9919
GCUCUCAGGUCUCGGACGCGCAGACCCAGCUGC	chr17:43024913-43025181(-)$1	268	227	260	14.4798
GAACGGGACCGGAGGAAGCAGCGGGAUGGAGGU	chr7:99686488-99686804(+)$1	316	157	190	13.0063

#DB
.(((((((..((((....)))).)))))))..)	chr11:9335978-9336286(-)$1	1	58	91	11.3200
((..(((.(((.((....)).))))))...)))	chr11:64949279-64949544(+)$1	1	138	171	15.4618
(..((((((..(((....))).)))))).))))	chr4:17812498-17812803(+)$1	1	63	96	11.6961
.((.(((((((.((....)).))))))))))))	chr5:133707165-133707394(+)$1	1	189	222	14.4933
(((.(.(((((.((....)).)).))).).)))	chr15:42867759-42868022(+)$1	1	27	60	14.6167
((....((((..((....))..))))....)))	chr6:47445594-47445907(+)$1	1	191	224	14.5423
((..((.(((.(((....))).))).))..)).	chr16:75018806-75019087(-)$1	1	180	213	11.9409
(((..(((.(.(((....))).).)))...)))	chr1:109825592-109825852(-)$1	1	10	43	13.3995
.(...(((((((((....))))))).))..).)	chr7:150756615-150756911(+)$1	1	37	70	12.6877
((((..((((..((....))..)))))))))).	chr3:38206982-38207215(+)$1	1	78	111	13.3501
(((((((((((.((....)).))))))).))))	chr2:46926276-46926541(+)$1	1	130	163	15.0968
((((..(((..(((....)))..))).)))).)	chr3:37284660-37284985(+)$1	1	143	176	11.7313
((.(.((.(((.((....)).))).))..).))	chr16:30662130-30662417(+)$1	1	154	187	13.9275
(..((((((((.((....)).)))..)))))))	chr18:43678109-43678357(-)$1	1	140	173	13.9991
(((.(((((((..(....)..))))).))..))	chr8:145650730-145651010(-)$1	1	123	156	11.7222
(((((.((((((((....)).)))).)).))))	chr6:166755853-166756149(-)$1	1	17	50	12.5494
(((((.(((((.((....))))))).))))).(	chr19:1605261-1605549(-)$1	1	57	90	12.6238
((((((.(((.(((....))).)))))))))).	chr11:67810665-67810942(+)$1	1	160	193	12.6316
((..(((((((.((....)).)).)))))..))	chr22:20105341-20105574(+)$1	1	147	180	13.6222
(((...(((((.((....)).))).))))))).	chr2:28974739-28975051(+)$1	1	128	161	13.8844
..(((((((((.((....)).))))).)))).)	chr7:104654741-104655015(+)$1	1	134	167	13.4764
(((.((((((((((....)))))))))).....	chr10:7830054-7830326(+)$1	1	53	86	13.6725
((((((.(.(((((....))))).).))).)))	chr3:197676964-197677212(+)$1	1	194	227	11.1395
(...(((((..(((....))).)))))....).	chr7:154794540-154794786(-)$1	1	10	43	13.2928
((((((((((((((....)))))))..))))))	chr12:125398683-125398946(-)$1	1	170	203	13.0886
((.((.(((((.((....))..)))).).)).)	chr9:101558621-101558914(-)$1	1	101	134	13.1818
((((((((((((((....)))))))))))))))	chr21:38445482-38445750(+)$1	1	118	151	14.9875
(.(((.((((((((....))).))))).)))..	chr4:56262028-56262277(+)$1	1	82	115	12.5032
((((...((((.((....)).))))...)))))	chr19:9938497-9938778(+)$1	1	241	274	14.2337
(((.(((((((.((....)).))))))).))))	chr7:97498360-97498604(-)$1	1	47	80	15.0039
.(((((((((((((....).))))).)))))))	chr9:91926024-91926276(+)$1	1	67	100	11.9074
(((((..(((.(((....))).)))))))))))	chr21:47878917-47879215(+)$1	1	89	122	11.8755
((...(((((..((....))..)))))))))))	chr19:56166205-56166472(+)$1	1	229	262	14.3504
(((((((((((..(....)..)))))))))))(	chr8:17941466-17941707(-)$1	1	42	75	14.9813
((((((((....((....))...))))))))))	chr6:47445514-47445792(+)$1	1	45	78	16.1282
.(((((((((((((....).))))).)))))))	chr9:91926080-91926310(+)$1	1	11	44	13.0450
(.(((((((...((....)).))))).)).)))	chr19:49990766-49991003(+)$1	1	95	128	13.6499
(((((((((((.((....)).))))).))))))	chr15:91537544-91537831(-)$1	1	92	125	15.4929
(((.....((((((....)))))))))))))..	chr8:87354874-87355138(+)$1	1	174	207	11.3916
((((((((.((.((....)).)).)))))))))	chr19:572481-572715(+)$1	1	3	36	15.6223
.(((.(..((((((....)))))).).)))..)	chr16:88729360-88729637(-)$1	1	67	100	11.5578
(.(....(((((((....)))))))..).))))	chr6:32095846-32096103(-)$1	1	38	71	12.7299
.(.((..(.((.((....)).)).)..)).).)	chr10:101379907-101380260(-)$1	1	115	148	13.7220
((((...(((((((....))))...)))...))	chr21:35287924-35288197(-)$1	1	124	157	11.2195
.((((((((((.((....)))))))))..))).	chr5:43121610-43121928(+)$1	1	6	39	14.9287
(.(((((((.((......)).))))))).))))	chr3:138553461-138553737(-)$1	1	229	262	10.2225
(...(((((((((.....)))))))))...)))	chr7:102119210-102119445(-)$1	1	158	191	10.1324
(.(((.((.(((.(....)))).))))).)))(	chr1:894494-894738(-)$1	1	41	74	11.9919
(((....(((((((....)).))))).))).))	chr17:43024913-43025181(-)$1	1	227	260	14.4798
...((...(((..(....)..)))..))...))	chr7:99686488-99686804(+)$1	1	157	190	13.0063

#PSSM
c : 0.14	f : 0.14	e : 0.12	d : 0.12	g : 0.10	" : 0.08	= : 0.08	[ : 0.06	h : 0.04	$ : 0.02	b : 0.02	a : 0.02	: : 0.02	i : 0.02	! : 0.02	
g : 0.16	e : 0.12	f : 0.12	c : 0.10	[ : 0.10	d : 0.08	" : 0.08	= : 0.08	! : 0.04	b : 0.04	a : 0.04	i : 0.02	h : 0.02	
g : 0.18	! : 0.10	" : 0.10	e : 0.10	c : 0.10	f : 0.08	d : 0.08	= : 0.08	[ : 0.06	b : 0.04	# : 0.02	i : 0.02	a : 0.02	h : 0.02	
g : 0.12	[ : 0.10	" : 0.10	c : 0.10	! : 0.08	f : 0.08	e : 0.08	b : 0.08	= : 0.08	# : 0.06	d : 0.04	a : 0.02	i : 0.02	$ : 0.02	h : 0.02	
g : 0.19	e : 0.12	b : 0.10	" : 0.10	= : 0.10	c : 0.08	# : 0.06	! : 0.06	f : 0.04	[ : 0.04	i : 0.04	a : 0.02	d : 0.02	$ : 0.02	
g : 0.19	[ : 0.12	e : 0.10	= : 0.10	b : 0.08	! : 0.08	" : 0.08	c : 0.06	# : 0.06	i : 0.04	f : 0.02	d : 0.02	$ : 0.02	a : 0.02	
e : 0.19	g : 0.18	b : 0.10	= : 0.10	c : 0.08	[ : 0.06	" : 0.06	! : 0.06	d : 0.04	# : 0.04	f : 0.02	a : 0.02	$ : 0.02	i : 0.02	
g : 0.21	e : 0.21	c : 0.14	= : 0.10	d : 0.08	b : 0.06	[ : 0.04	a : 0.04	f : 0.02	$ : 0.02	! : 0.02	i : 0.02	" : 0.02	
e : 0.23	c : 0.21	g : 0.16	d : 0.10	[ : 0.10	f : 0.06	= : 0.06	! : 0.02	# : 0.02	i : 0.02	
c : 0.19	e : 0.19	g : 0.14	d : 0.10	! : 0.08	b : 0.08	= : 0.06	f : 0.04	a : 0.02	# : 0.02	" : 0.02	[ : 0.02	i : 0.02	
e : 0.18	g : 0.14	c : 0.12	! : 0.12	d : 0.10	b : 0.10	[ : 0.08	= : 0.06	f : 0.04	# : 0.02	" : 0.02	i : 0.02	
[ : 0.34	c : 0.18	! : 0.12	e : 0.08	d : 0.06	g : 0.06	= : 0.04	f : 0.04	# : 0.02	" : 0.02	b : 0.02	i : 0.02	
b : 0.48	c : 0.16	g : 0.06	! : 0.06	e : 0.06	d : 0.04	= : 0.04	f : 0.04	o : 0.02	i : 0.02	[ : 0.02	
b : 0.48	c : 0.16	a : 0.12	g : 0.06	d : 0.04	= : 0.04	f : 0.04	e : 0.02	o : 0.02	n : 0.02	
m : 0.96	o : 0.02	n : 0.02	
m : 0.96	o : 0.02	n : 0.02	
m : 0.96	o : 0.02	n : 0.02	
m : 0.96	o : 0.02	n : 0.02	
b : 0.50	c : 0.16	a : 0.12	g : 0.06	d : 0.04	= : 0.04	f : 0.04	e : 0.02	i : 0.02	
b : 0.50	c : 0.18	g : 0.06	2 : 0.06	d : 0.04	= : 0.04	] : 0.04	f : 0.04	e : 0.02	i : 0.02	
] : 0.36	c : 0.18	2 : 0.14	g : 0.08	e : 0.08	d : 0.04	= : 0.04	f : 0.04	3 : 0.02	i : 0.02	
e : 0.18	g : 0.16	] : 0.14	c : 0.12	2 : 0.10	d : 0.08	b : 0.08	= : 0.06	f : 0.04	3 : 0.02	i : 0.02	
e : 0.23	c : 0.16	g : 0.16	d : 0.10	b : 0.08	f : 0.06	= : 0.06	] : 0.04	3 : 0.04	a : 0.02	2 : 0.02	i : 0.02	
e : 0.21	g : 0.18	c : 0.18	] : 0.12	d : 0.10	= : 0.08	f : 0.06	3 : 0.02	i : 0.02	b : 0.02	
e : 0.23	g : 0.19	c : 0.14	d : 0.10	= : 0.10	] : 0.06	2 : 0.04	a : 0.04	f : 0.02	3 : 0.02	i : 0.02	b : 0.02	
e : 0.18	g : 0.16	] : 0.14	c : 0.12	2 : 0.10	= : 0.10	d : 0.06	f : 0.04	b : 0.04	3 : 0.02	a : 0.02	i : 0.02	
g : 0.19	] : 0.16	c : 0.12	b : 0.12	e : 0.12	= : 0.10	f : 0.06	2 : 0.06	4 : 0.02	3 : 0.02	i : 0.02	
g : 0.19	b : 0.14	= : 0.10	c : 0.10	3 : 0.08	f : 0.08	e : 0.08	] : 0.04	4 : 0.04	d : 0.04	2 : 0.04	a : 0.04	i : 0.02	
] : 0.16	g : 0.12	3 : 0.10	b : 0.08	2 : 0.08	f : 0.08	e : 0.08	c : 0.08	= : 0.08	4 : 0.04	d : 0.04	a : 0.02	> : 0.02	i : 0.02	
g : 0.12	c : 0.12	3 : 0.10	e : 0.10	d : 0.08	] : 0.08	2 : 0.08	f : 0.08	= : 0.08	b : 0.04	4 : 0.04	a : 0.02	> : 0.02	i : 0.02	h : 0.02	
e : 0.16	g : 0.12	f : 0.12	d : 0.10	c : 0.10	2 : 0.08	= : 0.08	b : 0.04	a : 0.04	] : 0.04	3 : 0.04	> : 0.02	4 : 0.02	i : 0.02	h : 0.02	
e : 0.12	c : 0.12	f : 0.12	d : 0.10	g : 0.10	] : 0.10	= : 0.08	2 : 0.06	b : 0.06	h : 0.04	: : 0.02	> : 0.02	a : 0.02	i : 0.02	3 : 0.02	
f : 0.16	d : 0.14	e : 0.14	g : 0.10	] : 0.08	c : 0.06	b : 0.06	= : 0.06	3 : 0.04	h : 0.04	a : 0.02	: : 0.02	> : 0.02	2 : 0.02	i : 0.02	A : 0.02	

#score	662.314510769858
#seq	50
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_transcript_m3_run1.txt

#BEAR
dddd!!gggggggooooooggggggg22dddd	chr1:109642812-109643021(+)$1	209	171	203	10.2760
ddd"""bb[a[cccmmmmccca]bb333dddd	chr22:46751244-46751589(+)$1	345	191	223	10.7865
iiiiiii[eeeeennnnneeeee]iiiiiiii	chr21:44269047-44269274(-)$1	227	17	49	10.2691
[eeeeebb!!ddddmmmmdddd333bb]eeee	chr7:158158147-158158410(-)$1	263	48	80	9.9997
dd"""bb!!ddddoooooodddd22bb333dd	chr4:880848-881103(-)$1	255	214	246	10.6289
cc[a[ccc"""cccmmmmccc4444ccc]a]c	chr17:7079227-7079499(-)$1	272	53	85	10.8332
ccc!!a[gggggggnnnnnggggggg]a22cc	chr6:31638088-31638379(+)$1	291	170	202	12.5251
####dddd####cccmmmmccc4444dddd44	chr3:48670835-48671078(-)$1	243	148	180	9.2850
cceeeee[a!!a[bblllbb]a22a]eeeee2	chr14:105338848-105339113(+)$1	265	203	235	9.2844
gg]===========4444dddd22ccc]ccc]	chr22:51149538-51149786(+)$1	248	134	166	9.2856
dddd[a"""bb[bbnnnnnbbbba]dddd]dd	chr10:7764937-7765232(+)$1	295	132	164	10.7402
[a[ccc[ccc[cccmmmmcccccc]ccca]dd	chr16:70711708-70711957(-)$1	249	136	168	9.9004
B:=============lll=============:	chr11:65271884-65272127(+)$1	243	211	243	9.4272
b[dddd####ddddnnnnndddd22dddd]bb	chr19:16479248-16479527(-)$1	279	7	39	11.2749
cc[dddd[a[ddddnnnnndddda]dddd444	chr1:1822249-1822542(-)$1	293	117	149	11.5996
dd####hhhhhhhhnnnnnhhhhhhhh333dd	chr4:144257822-144258102(+)$1	280	179	211	10.5315
dbb!!==========mmmm==========22b	chr16:89370810-89371075(-)$1	265	141	173	10.7681
eeee!!dddd[ddddllldddd]dddd22eee	chr17:38334415-38334721(+)$1	306	151	183	9.6289
ddd==========annnnna]==========4	chr9:138899055-138899277(-)$1	222	4	36	13.6501
eeee!!bb[eeeeennnnneeeeebb22eeee	chr1:16957415-16957694(-)$1	279	177	209	11.3419
eeeeeeeee[ddddnnnnndddd22eeeeeFF	chr2:27448985-27449246(+)$1	261	61	93	10.5291
cc####a[ffffffnnnnnffffff]a333cc	chr11:93454806-93455010(+)$1	204	6	38	11.3978
ggggg[bb!!ddddnnnnndddd22bbggggg	chr11:57267586-57267839(-)$1	253	67	99	11.6711
[dddd$$$$$ddddnnnnndddd4444ddddg	chr7:158134399-158134630(-)$1	231	94	126	11.7018
eeeeeccc"""ddddllldddd22ccc333ee	chr14:103571655-103571897(+)$1	242	159	191	11.8679
dddd!!a[cccddddllldddd22ccc]a22d	chr14:103571245-103571495(+)$1	250	12	44	11.1110
c[ccceeeee!!cccmmmmccc22eeeee]cc	chr16:1785824-1786085(+)$1	261	198	230	9.2230
ffffeeeee[ddddnnnnndddd]eeeee333	chr1:109642763-109642967(+)$1	204	42	74	11.0205
iiiiiiii[eeeeennnnneeeee]iiiiiii	chr21:44268429-44268676(-)$1	247	4	36	11.7091
iii"""iiiiiiiiimmmmiiiiiiiii333i	chr16:22435025-22435331(-)$1	306	183	215	11.2676
eeeee"""bb[cccnnnnnccc]bbeeeee33	chr15:60834684-60835032(-)$1	348	29	61	12.7081
ccc$$$$$ffffffnnnnnffffff4444ccc	chr2:61697693-61697962(-)$1	269	128	160	10.2424
eeeeeeee[cccddddllldddd]ccc]eeee	chr21:44268260-44268520(-)$1	260	59	91	9.7511
========"""eeeeellleeeee]=======	chr4:880801-881048(-)$1	247	49	81	10.5259
iiii==========nnnnn==========:::	chr19:18881296-18881538(+)$1	242	117	149	11.0401
[dddda[bb[ddddnnnnndddd]bb]a22dd	chr7:47391784-47392083(-)$1	299	25	57	11.7732
dddd"""bb[cccooooooccc]bb22dddd]	chr20:43033430-43033714(+)$1	284	240	272	10.2373
eeee[ccc[bb[ccclllcccbbccc]eeeee	chr20:4843382-4843647(-)$1	265	84	116	10.0140
ffff[bb[bb[cccnnnnnccc]bb]bbffff	chr14:39554916-39555182(-)$1	266	192	224	10.5497
[ggggggg!!eeeeellleeeee]ggggggg]	chr16:31197730-31197958(+)$1	228	128	160	9.6786
c[bb[ffffffcccnnnnnccc22ffffff]b	chr3:120363105-120363354(-)$1	249	169	201	10.5493
ddd$$$$$ccc[cccmmmmccc]ccc4444dd	chr16:89555492-89555771(-)$1	279	74	106	10.4169
eeee[bb[a!!cccnnnnnccca]bb]eeeee	chr4:152246558-152246866(-)$1	308	181	213	13.2008
g[eeeee!!eeeeemmmmeeeee333eeeee4	chr16:50657629-50657943(+)$1	314	236	268	9.2573
!ddddccc####cccmmmmccc22ccc]dddd	chr20:31608086-31608305(+)$1	219	72	104	10.5550
eeeee####ccc[bbnnnnnbb]ccceeeee]	chr4:2070181-2070553(+)$1	372	324	356	10.4510
ddd$$$$$gggggggmmmmggggggg4444dd	chr2:238484931-238485199(-)$1	268	169	201	9.6221
""bb[iiiiiiiiimmmmiiiiiiiii]bb33	chr17:79048140-79048543(+)$1	403	214	246	9.2894
ddd:==========nnnnn==========:bb	chr7:158349479-158349827(-)$1	348	173	205	11.4017
dbb!!iiiiiiiiinnnnniiiiiiiii22bb	chr7:158125818-158126072(-)$1	254	3	35	12.2322
eeee[ccc"""cccnnnnnccc22ccceeeee	chr3:52832131-52832387(+)$1	256	224	256	14.1120
eeee[ccc[a!!bbnnnnnbb22a]ccc]eee	chr3:172020544-172020853(+)$1	309	153	185	11.9804
eee[bb!!bb[cccnnnnnccc]bb22bb]ee	chr1:12677133-12677386(-)$1	253	208	240	11.3581
[eeeee[ccc[cccnnnnnccc]ccc]eeeee	chr3:48665087-48665350(-)$1	263	61	93	13.0968
fffff!!ccc[cccnnnnnccc22ccc22fff	chr20:61914114-61914351(+)$1	237	175	207	12.3568
dddd!!bb"""cccmmmmccc22bb4444ddd	chr17:7142507-7142845(-)$1	338	132	164	10.5236
d[a!!dddd[ddddnnnnndddddddd]a]dd	chr13:76054872-76055123(-)$1	251	19	51	11.4456

#otherMatches

#Seq PSSM
UUACACUUUGAUCUUAUUUGAUCGGAUCGUGA	chr1:109642812-109643021(+)$1	209	171	203	10.2760
GGACAAGAUGAUGGAGUGCCACUUCCGAUUCC	chr22:46751244-46751589(+)$1	345	191	223	10.7865
ucgugugcugugugaggugcgcgccgcgugau	chr21:44269047-44269274(-)$1	227	17	49	10.2691
UGCUGUGUGUGUGCGUGUGCAUUGGGCUGCGG	chr7:158158147-158158410(-)$1	263	48	80	9.9997
gcugugcgagcgccugugugugugagcugugu	chr4:880848-881103(-)$1	255	214	246	10.6289
cagagucugagugugagaaugagagggagugu	chr17:7079227-7079499(-)$1	272	53	85	10.8332
GAGACUGCUCAUCUCAGAAGGAUGGGGAUGCU	chr6:31638088-31638379(+)$1	291	170	202	12.5251
CCAGUGGCGGACCUGGUUGCAGUAAGGCCAAG	chr3:48670835-48671078(-)$1	243	148	180	9.2850
GUGCCUGUGGCCGCCAAUGGGGAACUCGGGUG	chr14:105338848-105339113(+)$1	265	203	235	9.2844
uggcacacgugugugcgugggugAGCGGAUAC	chr22:51149538-51149786(+)$1	248	134	166	9.2856
gugugguguggagcggagugcccuggcauggc	chr10:7764937-7765232(+)$1	295	132	164	10.7402
UGACUCGCUGCUUCCUCAGAAUGGAGAGCUGA	chr16:70711708-70711957(-)$1	249	136	168	9.9004
UGGGAGGGGACUGAAGCCUUUAGUCUUUUCCA	chr11:65271884-65272127(+)$1	243	211	243	9.4272
GGUGUCUGUGUUAUGUAGGGUGAAUGAUGGUU	chr19:16479248-16479527(-)$1	279	7	39	11.2749
GGGGCCGGGAGUGGAGCAGCCGCCGCGGCGGG	chr1:1822249-1822542(-)$1	293	117	149	11.5996
ACAGAAGCUCCGGCACCGAGUCGGGGCAGAGU	chr4:144257822-144258102(+)$1	280	179	211	10.5315
ugccuguaugugugccuguguaugcgugCCCG	chr16:89370810-89371075(-)$1	265	141	173	10.7681
GAGCAUCUUCUGAACCGGGUUCUGGAGCGGCU	chr17:38334415-38334721(+)$1	306	151	183	9.6289
ugugcacgcgcgucugugugCACGUGCGUGUC	chr9:138899055-138899277(-)$1	222	4	36	13.6501
UCUCCACCGCGGCGCUCCUCGCCGGGCCGAGG	chr1:16957415-16957694(-)$1	279	177	209	11.3419
UCCAUAGUGGUGGCCCCUAGCCAGACACUGAA	chr2:27448985-27449246(+)$1	261	61	93	10.5291
CAAUAAGGGCAUAUGUCUGgugugugugugug	chr11:93454806-93455010(+)$1	204	6	38	11.3978
GUGGGAGAGUGGGUGUGUGACCCCGUCCCUGU	chr11:57267586-57267839(-)$1	253	67	99	11.6711
UGUGGGUGUGAGUGACGUCUGCUGGUGUCACC	chr7:158134399-158134630(-)$1	231	94	126	11.7018
guCCAUCCGAGCAGGGGCCCUGGGGGAGUGUG	chr14:103571655-103571897(+)$1	242	159	191	11.8679
UUGGGAGGGUGGACCCAGGGUCAUCGCGCAGC	chr14:103571245-103571495(+)$1	250	12	44	11.1110
ccguccaugugagcauccgugugagcguguga	chr16:1785824-1786085(+)$1	261	198	230	9.2230
ACUUCCGCUGUUUUAGGGAGGGAGAGCGGCCU	chr1:109642763-109642967(+)$1	204	42	74	11.0205
AUCGUGUGCUGUGUGAGGUGCGCGCCGCGUGA	chr21:44268429-44268676(-)$1	247	4	36	11.7091
cauugugcacaugugugugcacguguguugug	chr16:22435025-22435331(-)$1	306	183	215	11.2676
UCAGCAAGUGGAGGCAGGACUUGCAGCUGAAU	chr15:60834684-60835032(-)$1	348	29	61	12.7081
CCGAACGAUGUGCGAGAACUGCGCAGACCUGG	chr2:61697693-61697962(-)$1	269	128	160	10.2424
UGUGUGUGAGGUGCGCACUGCGUGACCGUGCG	chr21:44268260-44268520(-)$1	260	59	91	9.7511
uacgcgugagugcgcgagccgcgugcaugugu	chr4:880801-881048(-)$1	247	49	81	10.5259
gggugcggguguauguggugugcaccugcaug	chr19:18881296-18881538(+)$1	242	117	149	11.0401
ACCAUCCGUUUGUGAGCAGCACAUGCAGCUGU	chr7:47391784-47392083(-)$1	299	25	57	11.7732
ugcgugugugugcuuguguguggacugugugg	chr20:43033430-43033714(+)$1	284	240	272	10.2373
UGUUCUGCAGGUCGGCAGCCGCCGCGUGAUAC	chr20:4843382-4843647(-)$1	265	84	116	10.0140
UUCCAUAGCUGUAGGACUGCUGGAGGUAGGGA	chr14:39554916-39555182(-)$1	266	192	224	10.5497
GGUUAUUUUUUUUCCAGAGGAAAUAGAUAACG	chr16:31197730-31197958(+)$1	228	128	160	9.6786
AGCUGUUUGCUGCCAAACAGGUAAAGUAAAAG	chr3:120363105-120363354(-)$1	249	169	201	10.5493
AUCCCCUGGCAGGGCGGUAGCugugugugugg	chr16:89555492-89555771(-)$1	279	74	106	10.4169
GCCGGCUGCAGGUGGAGUUCGCGGAGGUGGCC	chr4:152246558-152246866(-)$1	308	181	213	13.2008
UGGCUGAAGCAAGGUUGGCUUUGAACUCAGCG	chr16:50657629-50657943(+)$1	314	236	268	9.2573
CUGUGUCCAAGGUGAAGCUUCAGGGGACCACG	chr20:31608086-31608305(+)$1	219	72	104	10.5550
GGCCCCUCUUGCCCCUCAGUGGAGCAGGGCCU	chr4:2070181-2070553(+)$1	372	324	356	10.4510
AUGGGCUGUGUGCUUGGGCAGGCACAAAAACA	chr2:238484931-238485199(-)$1	268	169	201	9.6221
GUGCCUGUUCGUgugcgugcauggauguguga	chr17:79048140-79048543(+)$1	403	214	246	9.2894
CUGACCUGCGUGGGAGUGACCUGCGCGGGAGC	chr7:158349479-158349827(-)$1	348	173	205	11.4017
GCGAGUGUGGGUGUGAGUGACGUCUGCAGGUG	chr7:158125818-158126072(-)$1	254	3	35	12.2322
CUGUUCCAGGGGCCUUAAUGGCAGUGGACAGU	chr3:52832131-52832387(+)$1	256	224	256	14.1120
guuugugugugccugagagagagagacagaga	chr3:172020544-172020853(+)$1	309	153	185	11.9804
CGGAGCGCGGCGCCAGAAAGGUACCAGGCACU	chr1:12677133-12677386(-)$1	253	208	240	11.3581
AGCUGUGGGCUCGAGGGUGUUGCGCCGAUGGC	chr3:48665087-48665350(-)$1	263	61	93	13.0968
CCCUCUUCUCAGGCCACAUGCUCAGAGCUGAG	chr20:61914114-61914351(+)$1	237	175	207	12.3568
GCUGAGGCGGACACUUCUGUGGAGCGAAGCAG	chr17:7142507-7142845(-)$1	338	132	164	10.5236
AGGAGCGCCCGUCCCGGGAGGACGGCGGUGUC	chr13:76054872-76055123(-)$1	251	19	51	11.4456

#DB
((((..(((((((......)))))))..))))	chr1:109642812-109643021(+)$1	1	171	203	10.2760
(((...((.(.(((....)))).))...))))	chr22:46751244-46751589(+)$1	1	191	223	10.7865
(((((((.(((((.....))))).))))))))	chr21:44269047-44269274(-)$1	1	17	49	10.2691
.(((((((..((((....))))...)).))))	chr7:158158147-158158410(-)$1	1	48	80	9.9997
((...((..((((......))))..))...))	chr4:880848-881103(-)$1	1	214	246	10.6289
((.(.(((...(((....)))....))).).)	chr17:7079227-7079499(-)$1	1	53	85	10.8332
(((..(.(((((((.....))))))).)..))	chr6:31638088-31638379(+)$1	1	170	202	12.5251
....((((....(((....)))....))))..	chr3:48670835-48671078(-)$1	1	148	180	9.2850
(((((((.(..(.((...)).)..).))))).	chr14:105338848-105339113(+)$1	1	203	235	9.2844
)).)))))))))))....))))..))).))).	chr22:51149538-51149786(+)$1	1	134	166	9.2856
((((.(...((.((.....))))).)))).))	chr10:7764937-7765232(+)$1	1	132	164	10.7402
.(.(((.(((.(((....)))))).)))).))	chr16:70711708-70711957(-)$1	1	136	168	9.9004
).(((((((((((((...))))))))))))).	chr11:65271884-65272127(+)$1	1	211	243	9.4272
(.((((....((((.....))))..)))).))	chr19:16479248-16479527(-)$1	1	7	39	11.2749
((.((((.(.((((.....))))).))))...	chr1:1822249-1822542(-)$1	1	117	149	11.5996
((....((((((((.....))))))))...))	chr4:144257822-144258102(+)$1	1	179	211	10.5315
(((..((((((((((....))))))))))..)	chr16:89370810-89371075(-)$1	1	141	173	10.7681
((((..((((.((((...)))).))))..)))	chr17:38334415-38334721(+)$1	1	151	183	9.6289
((((((((((((((.....).)))))))))).	chr9:138899055-138899277(-)$1	1	4	36	13.6501
((((..((.(((((.....)))))))..))))	chr1:16957415-16957694(-)$1	1	177	209	11.3419
))))(((((.((((.....))))..)))))((	chr2:27448985-27449246(+)$1	1	61	93	10.5291
((....(.((((((.....)))))).)...))	chr11:93454806-93455010(+)$1	1	6	38	11.3978
(((((.((..((((.....))))..)))))))	chr11:57267586-57267839(-)$1	1	67	99	11.6711
.((((.....((((.....))))....)))))	chr7:158134399-158134630(-)$1	1	94	126	11.7018
((((((((...((((...))))..)))...))	chr14:103571655-103571897(+)$1	1	159	191	11.8679
((((..(.(((((((...))))..))).)..)	chr14:103571245-103571495(+)$1	1	12	44	11.1110
(.((((((((..(((....)))..))))).))	chr16:1785824-1786085(+)$1	1	198	230	9.2230
(((((((((.((((.....)))).)))))...	chr1:109642763-109642967(+)$1	1	42	74	11.0205
((((((((.(((((.....))))).)))))))	chr21:44268429-44268676(-)$1	1	4	36	11.7091
(((...(((((((((....)))))))))...)	chr16:22435025-22435331(-)$1	1	183	215	11.2676
(((((...((.(((.....))).)))))))..	chr15:60834684-60835032(-)$1	1	29	61	12.7081
(((.....((((((.....))))))....)))	chr2:61697693-61697962(-)$1	1	128	160	10.2424
((((((((.(((((((...)))).))).))))	chr21:44268260-44268520(-)$1	1	59	91	9.7511
((((((((...(((((...))))).)))))))	chr4:880801-881048(-)$1	1	49	81	10.5259
))))((((((((((.....))))))))))...	chr19:18881296-18881538(+)$1	1	117	149	11.0401
.(((((.((.((((.....)))).)).)..))	chr7:47391784-47392083(-)$1	1	25	57	11.7732
((((...((.(((......))).))..)))).	chr20:43033430-43033714(+)$1	1	240	272	10.2373
((((.(((.((.(((...)))))))).)))))	chr20:4843382-4843647(-)$1	1	84	116	10.0140
((((.((.((.(((.....))).)).))))))	chr14:39554916-39555182(-)$1	1	192	224	10.5497
.(((((((..(((((...))))).))))))).	chr16:31197730-31197958(+)$1	1	128	160	9.6786
(.((.(((((((((.....)))..)))))).)	chr3:120363105-120363354(-)$1	1	169	201	10.5493
(((.....(((.(((....))).)))....))	chr16:89555492-89555771(-)$1	1	74	106	10.4169
((((.((.(..(((.....)))).)).)))))	chr4:152246558-152246866(-)$1	1	181	213	13.2008
(.(((((..(((((....)))))...))))).	chr16:50657629-50657943(+)$1	1	236	268	9.2573
.(((((((....(((....)))..))).))))	chr20:31608086-31608305(+)$1	1	72	104	10.5550
(((((....(((.((.....)).)))))))).	chr4:2070181-2070553(+)$1	1	324	356	10.4510
(((.....(((((((....)))))))....))	chr2:238484931-238485199(-)$1	1	169	201	9.6221
..((.(((((((((....))))))))).))..	chr17:79048140-79048543(+)$1	1	214	246	9.2894
))).((((((((((.....)))))))))).((	chr7:158349479-158349827(-)$1	1	173	205	11.4017
(((..(((((((((.....)))))))))..))	chr7:158125818-158126072(-)$1	1	3	35	12.2322
((((.(((...(((.....)))..))))))))	chr3:52832131-52832387(+)$1	1	224	256	14.1120
((((.(((.(..((.....))..).))).)))	chr3:172020544-172020853(+)$1	1	153	185	11.9804
(((.((..((.(((.....))).))..)).))	chr1:12677133-12677386(-)$1	1	208	240	11.3581
.(((((.(((.(((.....))).))).)))))	chr3:48665087-48665350(-)$1	1	61	93	13.0968
(((((..(((.(((.....)))..)))..)))	chr20:61914114-61914351(+)$1	1	175	207	12.3568
((((..((...(((....)))..))....)))	chr17:7142507-7142845(-)$1	1	132	164	10.5236
(.(..((((.((((.....)))))))).).))	chr13:76054872-76055123(-)$1	1	19	51	11.4456

#PSSM
d : 0.26	e : 0.21	c : 0.14	[ : 0.10	i : 0.07	g : 0.05	f : 0.05	# : 0.01	B : 0.01	b : 0.01	= : 0.01	! : 0.01	" : 0.01	
d : 0.26	e : 0.24	c : 0.10	[ : 0.08	i : 0.07	g : 0.05	f : 0.05	b : 0.03	# : 0.01	a : 0.01	: : 0.01	= : 0.01	" : 0.01	
e : 0.28	d : 0.24	i : 0.07	b : 0.07	[ : 0.05	c : 0.05	# : 0.05	f : 0.05	= : 0.03	g : 0.03	" : 0.01	] : 0.01	a : 0.01	
e : 0.26	d : 0.17	! : 0.07	= : 0.07	" : 0.05	i : 0.05	# : 0.05	f : 0.05	$ : 0.05	c : 0.03	g : 0.03	b : 0.03	a : 0.01	: : 0.01	[ : 0.01	
e : 0.17	! : 0.15	[ : 0.15	d : 0.10	= : 0.10	" : 0.07	$ : 0.05	i : 0.03	c : 0.03	# : 0.03	g : 0.03	b : 0.01	f : 0.01	
e : 0.14	c : 0.12	= : 0.12	! : 0.10	" : 0.07	i : 0.07	b : 0.07	d : 0.07	$ : 0.07	a : 0.05	# : 0.05	[ : 0.01	g : 0.01	f : 0.01	
b : 0.14	= : 0.12	c : 0.10	e : 0.10	i : 0.08	[ : 0.07	d : 0.07	$ : 0.07	" : 0.05	g : 0.03	# : 0.03	a : 0.03	! : 0.03	h : 0.01	f : 0.01	
c : 0.15	b : 0.12	[ : 0.12	= : 0.12	e : 0.07	$ : 0.07	i : 0.07	g : 0.05	! : 0.05	d : 0.05	" : 0.03	# : 0.03	h : 0.01	f : 0.01	
[ : 0.10	" : 0.10	= : 0.10	! : 0.08	c : 0.08	b : 0.08	e : 0.07	# : 0.07	g : 0.05	a : 0.05	f : 0.05	i : 0.05	d : 0.03	h : 0.01	$ : 0.01	
c : 0.12	= : 0.10	[ : 0.10	e : 0.08	! : 0.08	" : 0.08	b : 0.08	g : 0.05	# : 0.05	f : 0.05	i : 0.05	a : 0.03	d : 0.03	h : 0.01	$ : 0.01	
d : 0.17	[ : 0.14	= : 0.10	e : 0.08	" : 0.08	c : 0.08	! : 0.07	g : 0.05	f : 0.05	i : 0.05	# : 0.03	b : 0.03	h : 0.01	
c : 0.26	d : 0.22	e : 0.10	= : 0.10	g : 0.05	[ : 0.05	i : 0.05	# : 0.03	f : 0.03	! : 0.03	a : 0.01	h : 0.01	
c : 0.31	d : 0.24	e : 0.10	= : 0.10	g : 0.05	i : 0.05	[ : 0.03	b : 0.03	f : 0.03	h : 0.01	
c : 0.29	d : 0.22	= : 0.08	e : 0.08	b : 0.07	o : 0.05	i : 0.05	g : 0.03	f : 0.03	n : 0.01	h : 0.01	a : 0.01	
n : 0.50	m : 0.12	c : 0.08	d : 0.07	o : 0.05	b : 0.03	= : 0.03	e : 0.03	4 : 0.01	i : 0.01	g : 0.01	
n : 0.52	m : 0.24	l : 0.12	o : 0.05	4 : 0.01	d : 0.01	e : 0.01	
n : 0.52	m : 0.24	l : 0.15	o : 0.05	4 : 0.01	
n : 0.52	m : 0.24	l : 0.15	o : 0.05	4 : 0.01	
n : 0.50	m : 0.12	c : 0.08	d : 0.08	o : 0.05	e : 0.05	l : 0.03	b : 0.01	= : 0.01	i : 0.01	
c : 0.31	d : 0.26	e : 0.10	= : 0.07	g : 0.05	b : 0.05	i : 0.05	f : 0.03	h : 0.01	a : 0.01	n : 0.01	
c : 0.31	d : 0.26	e : 0.10	= : 0.07	g : 0.05	b : 0.05	i : 0.05	] : 0.03	f : 0.03	h : 0.01	
d : 0.26	c : 0.24	e : 0.10	= : 0.08	g : 0.05	b : 0.05	i : 0.05	a : 0.03	f : 0.03	2 : 0.03	4 : 0.01	h : 0.01	
2 : 0.19	d : 0.17	] : 0.15	e : 0.10	= : 0.08	g : 0.05	i : 0.05	4 : 0.03	b : 0.03	f : 0.03	3 : 0.01	c : 0.01	h : 0.01	a : 0.01	
2 : 0.22	b : 0.10	] : 0.10	c : 0.08	= : 0.08	g : 0.05	4 : 0.05	a : 0.05	e : 0.05	i : 0.05	3 : 0.03	d : 0.03	f : 0.03	h : 0.01	
c : 0.19	b : 0.15	] : 0.10	= : 0.08	g : 0.07	i : 0.07	2 : 0.07	4 : 0.05	f : 0.05	3 : 0.03	d : 0.03	e : 0.03	a : 0.01	h : 0.01	
c : 0.24	b : 0.10	= : 0.10	i : 0.08	d : 0.08	g : 0.07	4 : 0.07	e : 0.07	] : 0.05	3 : 0.03	2 : 0.03	h : 0.01	f : 0.01	
c : 0.17	e : 0.12	d : 0.10	= : 0.10	i : 0.08	] : 0.08	4 : 0.08	2 : 0.07	b : 0.07	3 : 0.01	h : 0.01	a : 0.01	g : 0.01	f : 0.01	
e : 0.19	] : 0.12	d : 0.10	= : 0.10	3 : 0.08	2 : 0.07	i : 0.07	4 : 0.07	c : 0.05	a : 0.03	g : 0.03	b : 0.03	f : 0.01	
e : 0.24	d : 0.15	= : 0.10	3 : 0.08	2 : 0.08	4 : 0.07	a : 0.05	i : 0.03	] : 0.03	g : 0.03	f : 0.03	b : 0.03	c : 0.01	
e : 0.24	d : 0.12	3 : 0.10	] : 0.10	2 : 0.08	= : 0.05	4 : 0.05	f : 0.05	i : 0.03	c : 0.03	g : 0.03	: : 0.03	a : 0.01	b : 0.01	
d : 0.24	e : 0.24	c : 0.08	3 : 0.07	= : 0.05	b : 0.05	i : 0.03	] : 0.03	4 : 0.03	2 : 0.03	g : 0.03	f : 0.03	F : 0.01	: : 0.01	
d : 0.22	e : 0.19	c : 0.08	b : 0.08	4 : 0.07	] : 0.07	i : 0.05	3 : 0.05	: : 0.03	g : 0.03	f : 0.03	2 : 0.01	F : 0.01	= : 0.01	

#score	621.9075157942384
#seq	57
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_UTR_m1_run2.txt

#BEAR
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dd	chr13:52731257-52731527(-)$1	270	25	63	51.5973
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:32153790-32154015(-)$1	225	60	98	53.8502
ggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gg	chr6:52367690-52367943(-)$1	253	113	151	52.2304
iiiiiii^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ii	chr9:116169950-116170243(-)$1	293	212	250	49.2138
!!eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ee	chr4:74269944-74270159(+)$1	215	104	142	49.6333
d[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:4390247-4390621(-)$1	374	53	91	54.1678
c[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:122735096-122735351(-)$1	255	82	120	54.3213
ffccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:4306806-4307105(+)$1	299	77	115	53.9290
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr8:37556545-37556810(+)$1	265	172	210	53.8502
ggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:96874014-96874292(+)$1	278	179	217	54.1691
cc[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^cc	chr14:95085227-95085494(+)$1	267	134	172	51.2575
"""bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:36198784-36199078(+)$1	294	122	160	53.6383
ggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gg	chr6:52367591-52367890(-)$1	299	60	98	52.2304
c[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr22:25589448-25589747(+)$1	299	132	170	54.3213
c!!bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:153294379-153294679(-)$1	300	66	104	53.8125
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:72182662-72182897(+)$1	235	59	97	53.6692
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:28300697-28300991(-)$1	294	175	213	54.0295
gggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^gg	chr9:33111913-33112223(-)$1	310	261	299	50.8985
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:131203622-131203894(-)$1	272	33	71	53.8502
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:214161426-214161694(+)$1	268	91	129	53.6692
!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:81941011-81941265(-)$1	254	101	139	54.5111
[a[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^cc	chr4:170641558-170641833(+)$1	275	119	157	51.4046
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr20:279687-279950(+)$1	263	20	58	53.8502
ggg[a^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr5:92919031-92919287(+)$1	256	122	160	54.1479
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr22:35690686-35690972(+)$1	286	72	110	54.0295
ggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:30808494-30808753(+)$1	259	97	135	54.1691
ca[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc]	chr7:73609903-73610171(+)$1	268	80	118	48.6037
:dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr16:70190839-70191078(+)$1	239	121	159	47.8864
ggggggg^^^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr12:123776161-123776444(-)$1	283	150	188	41.5952
:dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^ddddd	chr1:204095948-204096228(+)$1	280	54	92	46.2799
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:35663889-35664223(-)$1	334	161	199	54.0295
"""bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:214161374-214161624(+)$1	250	37	75	53.6383
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ff	chr17:27207230-27207533(-)$1	303	197	235	51.3576
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:18474812-18475067(+)$1	255	77	115	53.4136
c[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:122735151-122735440(-)$1	289	171	209	54.3213
hhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:240898928-240899282(-)$1	354	150	188	53.4017
f!!bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:63955111-63955465(-)$1	354	27	65	53.6956
ddd[a^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr20:35090722-35090957(+)$1	235	161	199	53.8195
eeeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee8888	chr11:66432711-66433004(-)$1	293	77	115	42.3239
ggggg^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:204308608-204308884(-)$1	276	6	44	54.1691
""ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:73685765-73686081(-)$1	316	168	206	54.3047
ddd[a^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:150758715-150759007(+)$1	292	108	146	53.8195
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr1:150595907-150596186(-)$1	279	88	126	49.0902
!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:81940959-81941211(-)$1	252	47	85	54.5111
ggggggg^^^^^^^^^^^^^^^^^^^^^^^^^gggggg	chr12:58141967-58142253(-)$1	286	77	115	43.2654
hhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr14:23768712-23768966(-)$1	254	32	70	53.4017
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ee	chr19:18280137-18280472(+)$1	335	94	132	51.9580
ccc"""ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^cc	chr2:27875517-27875823(-)$1	306	160	198	47.0619
=====eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^ee	chr11:63765247-63765531(+)$1	284	168	206	44.6905
#dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^d	chr12:110606750-110607029(+)$1	279	131	169	52.9218
!dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:77744645-77744915(-)$1	270	143	181	54.0367
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:18670656-18670932(+)$1	276	110	148	54.0295
eeeee!!a^^^^^^^^^^^^^^^^^^^^^^^^^^a22e	chr15:65809086-65809350(-)$1	264	105	143	46.9747
##ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:40509372-40509644(-)$1	272	178	216	54.2184

#otherMatches

#Seq PSSM
gucaacuguucuuacaucuuuccuucccauuuuuucug	chr13:52731257-52731527(-)$1	270	25	63	51.5973
UCUGUCUCUCCCUUUUUUCCAUCUUUUUCCUCUCUCGC	chr6:32153790-32154015(-)$1	225	60	98	53.8502
GGCUUCCUCUUAUUCUUCCACAAACCAUUCUCAAUAAA	chr6:52367690-52367943(-)$1	253	113	151	52.2304
CUCUUGAUUCCUUAGUUCUAAUCUCACGuuuuguuuuu	chr9:116169950-116170243(-)$1	293	212	250	49.2138
AGUGGGUAACCUUUAUUUCCCUUCUUUUUCUCUUUAGC	chr4:74269944-74270159(+)$1	215	104	142	49.6333
GCGGGUUucccucucucccuucucuccccuccucuccc	chr19:4390247-4390621(-)$1	374	53	91	54.1678
CUAAGccucccuccccuacucccuccuuuccuuccuuc	chrX:122735096-122735351(-)$1	255	82	120	54.3213
cccucccuccuucccucccuuccuuccucucuuuccuc	chr7:4306806-4307105(+)$1	299	77	115	53.9290
UUUGUUuuuuguuuuguuuuguuuuguuuuUUCCUUUG	chr8:37556545-37556810(+)$1	265	172	210	53.8502
UGGUGAUCUGCCCUCCUCUCUCUCUUUUAUCAUUUCUC	chr15:96874014-96874292(+)$1	278	179	217	54.1691
CUGGGCUCUCCCUCACCCCCAAUAACUUUUACUCUUGC	chr14:95085227-95085494(+)$1	267	134	172	51.2575
CUUGCUUUCUCUUUCCCAUAUUCCUUUUCUUUUUCUCU	chr6:36198784-36199078(+)$1	294	122	160	53.6383
GGCUUCCUCUUAUUCUUCCACAAACCAUUCUCAAUAAA	chr6:52367591-52367890(-)$1	299	60	98	52.2304
CUCCCUCAUCUUCCUUUACCCCUCUUCUCUGUCUUAGU	chr22:25589448-25589747(+)$1	299	132	170	54.3213
AUUGGUUUCUcuucuccccuuccauuucugccuuuugu	chrX:153294379-153294679(-)$1	300	66	104	53.8125
ccuaccucccucacuuucuuccucucuccuuccuuucc	chr10:72182662-72182897(+)$1	235	59	97	53.6692
cuuccucucucccucccucucugccucucucucucucu	chr1:28300697-28300991(-)$1	294	175	213	54.0295
AAGUUCAGCCGAACCCACACCCCAACUCCCUCCCAAGA	chr9:33111913-33112223(-)$1	310	261	299	50.8985
CCCAAUCACCUCCCCUUCAUUCAUUCCUUCCCUUAUCC	chr6:131203622-131203894(-)$1	272	33	71	53.8502
agcuccucuucuuuucuucuccucuucuucccucuccu	chr1:214161426-214161694(+)$1	268	91	129	53.6692
UUGCCUUUUUCUAUUGUUAAUGUUCUGAAUUUCCUUUU	chr14:81941011-81941265(-)$1	254	101	139	54.5111
ucucucucucucucucucucucucucucucucuACUGA	chr4:170641558-170641833(+)$1	275	119	157	51.4046
GGGUAUUUGUUUUGUUUCUUGUACUUUUUCUCUCUCUC	chr20:279687-279950(+)$1	263	20	58	53.8502
ucuccuuucucuccuuuuucucccuccuccuugucucu	chr5:92919031-92919287(+)$1	256	122	160	54.1479
UACAGAUUUGUCAuuucucccuuccgcccucccuucuu	chr22:35690686-35690972(+)$1	286	72	110	54.0295
uccugcauuccucuccucucuucuuuccucucuguccc	chr17:30808494-30808753(+)$1	259	97	135	54.1691
UGCGUCAUUUUUCCUUUGCUUUCUCUUUACUUUAGACA	chr7:73609903-73610171(+)$1	268	80	118	48.6037
UGCCCUUCCACCUCCUCCUCCUAAUAUUCACUCUGGGC	chr16:70190839-70191078(+)$1	239	121	159	47.8864
GCUCUAUUUAUUCUUUUCUUGACUUUCCCAUAUGGGGC	chr12:123776161-123776444(-)$1	283	150	188	41.5952
GUGCAUUUCUGUCUCUCUCUGUCCUCGUCUCUCUGCAA	chr1:204095948-204096228(+)$1	280	54	92	46.2799
UAGCAUUUCUUUUUUUAUCACACUAGUUUCUUUUCCUC	chr15:35663889-35664223(-)$1	334	161	199	54.0295
UUCGCUCCUCUUCUCUUCUUUACCCUucuccucucucc	chr1:214161374-214161624(+)$1	250	37	75	53.6383
GCGUGUCUUUUCCUUUGUCUGUCUUUUUCUUUCCCCCA	chr17:27207230-27207533(-)$1	303	197	235	51.3576
CUGGcuuucuuucuuucuuucuuucuuucuuucuugcu	chr19:18474812-18475067(+)$1	255	77	115	53.4136
CUAAGccucccuccccuacucccuccuuuccuuccuuc	chrX:122735151-122735440(-)$1	289	171	209	54.3213
uuuuccucccugccucuuuccuucccuccuucucuucc	chr2:240898928-240899282(-)$1	354	150	188	53.4017
GUUGGUuuccuuccuuccuuccuuccuuccuuccuucc	chr10:63955111-63955465(-)$1	354	27	65	53.6956
CUGUCUCCCCUUCUCUCUGCUCCUUGUCUCCCUCUCCC	chr20:35090722-35090957(+)$1	235	161	199	53.8195
CAACUAUGUUUUCUUUCUUAAUUCUUCUAAGUUGACUU	chr11:66432711-66433004(-)$1	293	77	115	42.3239
agccucucucucucuuuuuuucucuucuuuuuuauucu	chr2:204308608-204308884(-)$1	276	6	44	54.1691
ACCACCUUCCCUCUUUCUACAUUCUCAUCUACUCAUUG	chr11:73685765-73686081(-)$1	316	168	206	54.3047
aguccucuccugucuccuuguucuucucuuuucuucCU	chr7:150758715-150759007(+)$1	292	108	146	53.8195
GUACGUUUUCUUCAUCUCCGAUCUUCUCAAAUUCUGUA	chr1:150595907-150596186(-)$1	279	88	126	49.0902
UUGCCUUUUUCUAUUGUUAAUGUUCUGAAUUUCCUUUU	chr14:81940959-81941211(-)$1	252	47	85	54.5111
GCCUUAAUGACAUUCCCCUCCCACCUCUCCUUUUGAGG	chr12:58141967-58142253(-)$1	286	77	115	43.2654
ccuauuccuaaccucuuugcuucucucuuucuuuccuu	chr14:23768712-23768966(-)$1	254	32	70	53.4017
UGGGGUucucucacccucuuucucuuuccuucccuccc	chr19:18280137-18280472(+)$1	335	94	132	51.9580
GGACUCACAUACUUUCACCAUAUACAUAUUUUCAAUUG	chr2:27875517-27875823(-)$1	306	160	198	47.0619
UCCCAGGGCCACCCACACUUCAUCUGCUCCCUCAUAGG	chr11:63765247-63765531(+)$1	284	168	206	44.6905
cuuccucucucucucucuuucuuUCuuucuucuuucug	chr12:110606750-110607029(+)$1	279	131	169	52.9218
uuccuucuuuuuuuguuuguuuguuuguuuuuuAAUUA	chr2:77744645-77744915(-)$1	270	143	181	54.0367
uucucucucucuuucucucucucccuuccuuccuuccc	chr19:18670656-18670932(+)$1	276	110	148	54.0295
GGCAUUCCUCCCAUCUCUCUUCUCAAUAUUCUCUGCUA	chr15:65809086-65809350(-)$1	264	105	143	46.9747
UUGACUAAACUUUUAUCCUUCCUUUAACUUAAUCUUUU	chrX:40509372-40509644(-)$1	272	178	216	54.2184

#DB
((((................................))	chr13:52731257-52731527(-)$1	1	25	63	51.5973
(((((.................................	chr6:32153790-32154015(-)$1	1	60	98	53.8502
(((((...............................))	chr6:52367690-52367943(-)$1	1	113	151	52.2304
(((((((.............................))	chr9:116169950-116170243(-)$1	1	212	250	49.2138
..(((((.............................))	chr4:74269944-74270159(+)$1	1	104	142	49.6333
(.(((.................................	chr19:4390247-4390621(-)$1	1	53	91	54.1678
(.(((.................................	chrX:122735096-122735351(-)$1	1	82	120	54.3213
(((((.................................	chr7:4306806-4307105(+)$1	1	77	115	53.9290
(((((.................................	chr8:37556545-37556810(+)$1	1	172	210	53.8502
(((((.................................	chr15:96874014-96874292(+)$1	1	179	217	54.1691
((.(((..............................))	chr14:95085227-95085494(+)$1	1	134	172	51.2575
...((.................................	chr6:36198784-36199078(+)$1	1	122	160	53.6383
(((((...............................))	chr6:52367591-52367890(-)$1	1	60	98	52.2304
(.(((.................................	chr22:25589448-25589747(+)$1	1	132	170	54.3213
(..((.................................	chrX:153294379-153294679(-)$1	1	66	104	53.8125
(((...................................	chr10:72182662-72182897(+)$1	1	59	97	53.6692
.((((.................................	chr1:28300697-28300991(-)$1	1	175	213	54.0295
((((((..............................))	chr9:33111913-33112223(-)$1	1	261	299	50.8985
(((((.................................	chr6:131203622-131203894(-)$1	1	33	71	53.8502
(((...................................	chr1:214161426-214161694(+)$1	1	91	129	53.6692
..(((.................................	chr14:81941011-81941265(-)$1	1	101	139	54.5111
.(.(((..............................))	chr4:170641558-170641833(+)$1	1	119	157	51.4046
(((((.................................	chr20:279687-279950(+)$1	1	20	58	53.8502
(((.(.................................	chr5:92919031-92919287(+)$1	1	122	160	54.1479
.((((.................................	chr22:35690686-35690972(+)$1	1	72	110	54.0295
(((((.................................	chr17:30808494-30808753(+)$1	1	97	135	54.1691
((.(((............................))).	chr7:73609903-73610171(+)$1	1	80	118	48.6037
.((((.............................))))	chr16:70190839-70191078(+)$1	1	121	159	47.8864
(((((((........................)))))))	chr12:123776161-123776444(-)$1	1	150	188	41.5952
.((((............................))))(	chr1:204095948-204096228(+)$1	1	54	92	46.2799
.((((.................................	chr15:35663889-35664223(-)$1	1	161	199	54.0295
...((.................................	chr1:214161374-214161624(+)$1	1	37	75	53.6383
(((((...............................))	chr17:27207230-27207533(-)$1	1	197	235	51.3576
(((((.................................	chr19:18474812-18475067(+)$1	1	77	115	53.4136
(.(((.................................	chrX:122735151-122735440(-)$1	1	171	209	54.3213
(((((.................................	chr2:240898928-240899282(-)$1	1	150	188	53.4017
(..((.................................	chr10:63955111-63955465(-)$1	1	27	65	53.6956
(((.(.................................	chr20:35090722-35090957(+)$1	1	161	199	53.8195
(((((........................)))))....	chr11:66432711-66433004(-)$1	1	77	115	42.3239
(((((.................................	chr2:204308608-204308884(-)$1	1	6	44	54.1691
..(((.................................	chr11:73685765-73686081(-)$1	1	168	206	54.3047
(((.(.................................	chr7:150758715-150759007(+)$1	1	108	146	53.8195
(((((.............................))))	chr1:150595907-150596186(-)$1	1	88	126	49.0902
..(((.................................	chr14:81940959-81941211(-)$1	1	47	85	54.5111
(((((((.........................))))))	chr12:58141967-58142253(-)$1	1	77	115	43.2654
(((((.................................	chr14:23768712-23768966(-)$1	1	32	70	53.4017
(((((...............................))	chr19:18280137-18280472(+)$1	1	94	132	51.9580
(((...(((...........................))	chr2:27875517-27875823(-)$1	1	160	198	47.0619
)))))(((((..........................))	chr11:63765247-63765531(+)$1	1	168	206	44.6905
.((((................................)	chr12:110606750-110607029(+)$1	1	131	169	52.9218
.((((.................................	chr2:77744645-77744915(-)$1	1	143	181	54.0367
.((((.................................	chr19:18670656-18670932(+)$1	1	110	148	54.0295
(((((..(..........................)..)	chr15:65809086-65809350(-)$1	1	105	143	46.9747
..(((.................................	chrX:40509372-40509644(-)$1	1	178	216	54.2184

#PSSM
g : 0.16	c : 0.16	e : 0.14	[ : 0.09	d : 0.07	! : 0.07	f : 0.07	" : 0.05	: : 0.03	h : 0.03	# : 0.03	i : 0.01	= : 0.01	
d : 0.20	g : 0.16	e : 0.14	! : 0.09	[ : 0.07	c : 0.07	f : 0.05	" : 0.05	a : 0.03	h : 0.03	i : 0.01	= : 0.01	# : 0.01	
c : 0.22	d : 0.20	e : 0.16	g : 0.16	[ : 0.05	" : 0.03	! : 0.03	f : 0.03	h : 0.03	i : 0.01	= : 0.01	
c : 0.22	d : 0.16	e : 0.16	g : 0.14	b : 0.07	[ : 0.05	^ : 0.03	f : 0.03	h : 0.03	i : 0.01	" : 0.01	= : 0.01	
c : 0.22	e : 0.16	g : 0.14	d : 0.14	b : 0.07	^ : 0.05	a : 0.05	f : 0.03	h : 0.03	i : 0.01	" : 0.01	= : 0.01	
^ : 0.79	c : 0.05	g : 0.05	e : 0.03	i : 0.01	" : 0.01	! : 0.01	
^ : 0.87	e : 0.03	g : 0.03	i : 0.01	c : 0.01	! : 0.01	
^ : 0.94	c : 0.01	e : 0.01	a : 0.01	
^ : 0.96	c : 0.01	e : 0.01	
^ : 0.98	e : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.98	e : 0.01	
^ : 0.98	e : 0.01	
^ : 0.96	g : 0.01	e : 0.01	
^ : 0.94	g : 0.03	e : 0.01	
^ : 0.92	g : 0.03	d : 0.01	e : 0.01	
^ : 0.85	d : 0.03	g : 0.03	c : 0.01	8 : 0.01	e : 0.01	a : 0.01	
^ : 0.85	d : 0.03	g : 0.03	c : 0.01	8 : 0.01	e : 0.01	2 : 0.01	
^ : 0.62	g : 0.09	e : 0.07	c : 0.07	d : 0.05	i : 0.01	f : 0.01	8 : 0.01	2 : 0.01	
^ : 0.61	g : 0.09	e : 0.09	d : 0.07	c : 0.05	i : 0.01	] : 0.01	f : 0.01	8 : 0.01	

#score	2803.273365088708
#seq	54
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363HHT_NONO_CDS_m1_run2.txt

#BEAR
iiiiiiii!!dddd!!cccooooooccc22dddd]iiiii	chr12:62996855-62997115(+)$1	260	74	114	13.8027
!!dddd!!eeeee[bb[bboooooobbbb]eeeee22ddd	chr19:10407024-10407254(+)$1	230	125	165	11.3939
ccc[eeeee[eeeee[cccnnnnnccceeeee22eeeee]	chr22:50639562-50639858(+)$1	296	177	217	14.8075
eeccc[abb!!gggggggooooooggggggg333bb]a]c	chr19:47778071-47778313(+)$1	242	130	170	12.1659
eeeee"""dddd!!eeeeennnnneeeee333dddd22ee	chr11:66392979-66393226(+)$1	247	179	219	12.8673
ee[ggggggg!!dddd[bbnnnnnbb]dddd22ggggggg	chr16:2059374-2059630(-)$1	256	72	112	14.8977
b!!iiiiiiiiibb[ddddoooooodddd22bb]iiiiii	chr8:66753527-66753835(-)$1	308	11	51	11.9971
ffff!!bb"""dddd!!bbnnnnnbb22dddd333bb333	chr19:2811949-2812266(+)$1	317	201	241	14.2770
ddd[eeeee[eeeee[cccnnnnnccceeeee22eeeee]	chr22:50639692-50639906(+)$1	214	47	87	14.4285
f[eeeeeffffff"""cccooooooccc22ffffff]eee	chr22:18256213-18256483(-)$1	270	172	212	12.3515
ccdddd"""ccc[bb[cccnnnnnccc]bb]ccc]dddd]	chr19:36517721-36517989(+)$1	268	164	204	14.5782
B:dddda[ffffff"""bbnnnnnbb]ffffff]a]dddd	chr1:54703741-54704049(-)$1	308	3	43	12.7676
ggggggg[dddd"""ddddnnnnndddd333ddddggggg	chr15:23086194-23086452(-)$1	258	81	121	14.1982
gggggeeeee[bb[bb[bbnnnnnbb22bb]bb]eeeee]	chr16:89367025-89367337(-)$1	312	19	59	13.6225
eeeee!!bb[bb[ffffffnnnnnffffffbb]bbeeeee	chr16:85392842-85393087(+)$1	245	177	217	11.4626
c!!dddd[a[===========lll===========]a]dd	chr10:70481118-70481409(+)$1	291	57	97	13.8436
ggggggg!!dddd[eeeeennnnneeeeedddd22ggggg	chr21:45560805-45561060(+)$1	255	133	173	13.4784
ggggg!!bb[dddd!!bboooooobbdddd]bb]gggggg	chr22:50018026-50018238(-)$1	212	84	124	12.5249
[a[eeeee[===========mmmm===========eeeee	chr1:155658010-155658348(-)$1	338	147	187	12.4294
============[ccccccmmmmccc]ccc==========	chr17:80788091-80788385(+)$1	294	55	95	13.4810
CCC===========!!cccnnnnnccc]===========C	chr18:3451884-3452164(+)$1	280	73	113	13.3372
##aiiiiiiiii"""ddddnnnnndddd]iiiiiiiii]a	chr1:1271450-1271727(-)$1	277	175	215	15.0462
[ccc"""dddd!!ffffffnnnnnffffff22dddd333c	chr19:58991392-58991660(-)$1	268	95	135	12.9174
$$eeeee!!ccc####cccnnnnnccc4444ccc22eeee	chr12:112036485-112036706(-)$1	221	24	64	15.3910
c[bb[bbggggggg!!cccnnnnnccc]ggggggg4444b	chr1:36787827-36788081(+)$1	254	103	143	15.3487
c!!gggggggdddd[ddddoooooodddd]dddd]ggggg	chr15:80215165-80215442(-)$1	277	118	158	12.3527
cc!!ffffff[eeeee[bbnnnnnbbeeeee]ffffffcc	chr12:62996653-62996982(+)$1	329	80	120	14.0604
cc[ffffff[ccc"""ccclllccc333ccc]ffffffcc	chr3:50374562-50374874(-)$1	312	256	296	12.4837
hhhhh[ddddeeeee[cccnnnnnccc]eeeee]ddddhh	chr1:22263567-22263808(-)$1	241	4	44	13.3570
d"""dddd[dddd[cccooooooccc]dddddddd333dd	chr18:10526607-10526886(+)$1	279	181	221	11.8615
!!ccc[bb[dddd[bb[bbnnnnnbbbb22dddd]bb]cc	chr19:541044-541307(+)$1	263	154	194	13.4646
==========!!ccc"""bbmmmmbb]ccc==========	chr5:884048-884265(-)$1	217	34	74	12.8152
e!!eeeee!!gggggggbbnnnnnbb]gggggggeeeee2	chr17:7476604-7476859(+)$1	255	65	105	16.0048
bb[ffffffcccbb"""bbnnnnnbb333bb]ccc]ffff	chr12:111872655-111872890(+)$1	235	17	57	14.0118
d!!ffffff!!a[a[cccnnnnnccc]a]affffff22dd	chr19:798419-798763(+)$1	344	253	293	13.7660
ffffff]ddddgggggggooooooggggggggggggggdd	chr2:24239724-24240009(+)$1	285	133	173	11.5898
b!!ffffff[ccc[a[cccmmmmccc]acccffffff22b	chr8:145107296-145107543(-)$1	247	102	142	11.3366
bb"""bb[eeeee####bbnnnnnbb333eeeeebbbbdd	chr7:127669182-127669434(+)$1	252	5	45	13.8201
ccc:ccc[ccc[ddddcccnnnnnccc]dddd]ccc]ccc	chr20:32250010-32250258(-)$1	248	64	104	13.7193
a[ffffff!!ddddeeeeennnnneeeee]dddd22ffff	chr7:1498714-1498969(-)$1	255	173	213	12.4331
a!!dddd[gggggggcccmmmmccc333gggggggdddd2	chr3:5229417-5229701(+)$1	284	231	271	10.7426
"""bbccc!!ffffffbb[annnnna]bb]ffffffccc]	chr12:49523942-49524185(-)$1	243	93	133	12.2406
dd!!ddddbbccc[cccooooooccc]ccc]bb]dddd33	chr1:1689814-1690095(-)$1	281	204	244	11.2398
'''dddd[dddd[ddddbbnnnnnbb]dddd]dddddddd	chr8:144909489-144909794(-)$1	305	16	56	12.1785
c[bbccc[eeeeeccc[bbnnnnnbb]ccc]eeeee]ccc	chr10:74452357-74452641(+)$1	284	117	157	15.0554
dddd[ffffff[a[cccooooooccc]a]ffffffddddf	chr4:78740326-78740613(-)$1	287	30	70	10.8274
iiii[bb"""eeeee[cccnnnnnccc]eeeee333bb]i	chr19:36526216-36526512(+)$1	296	150	190	15.0015
fffff[dddd[ccc!!cccnnnnnccc22ccc4444dddd	chr9:133710735-133711015(+)$1	280	118	158	14.5841
###dddd!!cccbb!!cccnnnnnccc4444bb]ccc]dd	chr16:2105264-2105566(+)$1	302	216	256	15.5924
iiiiiii"""hhhhhhhh[annnnna]hhhhhhhh333ii	chr16:1421474-1421744(-)$1	270	75	115	11.9873
dddd!!ccc!!bb[bb[bbnnnnnbb]bb]bb22ccc22d	chr22:50020419-50020645(-)$1	226	101	141	13.2935
a[bb"""ggggggg[cccbblllbb333ccc]ggggggg2	chr16:89643768-89644078(+)$1	310	41	81	12.1163
eeeebb[bbccc[ccc[bbnnnnnbbccc]ccc]bb]bb3	chr11:61584269-61584515(+)$1	246	44	84	13.4494
zzzzzzzeeeee]ccccccnnnnncccccc[dddd[eeee	chr1:1499956-1500212(-)$1	256	83	123	12.2552
cc[==============[aooooooa]=============	chr12:123464886-123465170(+)$1	284	67	107	15.3392
!!eeeee[a####ffffffnnnnnffffff22a]eeeee2	chr7:5460767-5461001(-)$1	234	128	168	13.4572

#otherMatches

#Seq PSSM
GUGGGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCCCC	chr12:62996855-62997115(+)$1	260	74	114	13.8027
CAGGCGAGGCCGUGUGUCUGAACGGAgcgggcggcggcgc	chr19:10407024-10407254(+)$1	230	125	165	11.3939
AGCCGCGCCUCGUGGCGCUGUCAGAGCCCGCGCUGGCGUU	chr22:50639562-50639858(+)$1	296	177	217	14.8075
GCGGCGCCGAGAGCCCCGGAGGCGCGGGGCUGAGCGAGGG	chr19:47778071-47778313(+)$1	242	130	170	12.1659
GCCCCCCCGCCUCUGCCCCCAGCUGGGGCUUAGGGCAAGG	chr11:66392979-66393226(+)$1	247	179	219	12.8673
CUACUGCGCCGUGUGCCGCGAGGAGCUGCGCCAGGUgcgg	chr16:2059374-2059630(-)$1	256	72	112	14.8977
CGAGCCGCGGCCCCCUCCCACUGCAggggccggcggccgc	chr8:66753527-66753835(-)$1	308	11	51	11.9971
GGAGAAGGCUUGGCGUUUGCCAUUCAUUUGCUCCUCCAAC	chr19:2811949-2812266(+)$1	317	201	241	14.2770
AGCCGCGCCUCGUGGCGCUGUCAGAGCCCGCGCUGGCGUU	chr22:50639692-50639906(+)$1	214	47	87	14.4285
GCAGGUGAGGAGCAGAUGGACCCACCCAGAGCUCUUCCAC	chr22:18256213-18256483(-)$1	270	172	212	12.3515
UGGAGCAGUGUCAUGUCGGUCAGCCCGUCACGAUCGUUCA	chr19:36517721-36517989(+)$1	268	164	204	14.5782
GAGCUCAGGGUCUGAAAAGGAGGUCUACAGACUGUAGAGC	chr1:54703741-54704049(-)$1	308	3	43	12.7676
cggcggcCGGGGAGGGGGCGCGUAGCCCGAGCCCCGCCGC	chr15:23086194-23086452(-)$1	258	81	121	14.1982
GAGCGCCAUGGGCCGAAGCUGCCUGCCCUCUGCACGUGGA	chr16:89367025-89367337(-)$1	312	19	59	13.6225
ggaguuuggcugugguuuggggagcaggcccacccacuuc	chr16:85392842-85393087(+)$1	245	177	217	11.4626
UGGGACUGGGACGGGAGGGACGCGGUCCCUUUUGUGCGGG	chr10:70481118-70481409(+)$1	291	57	97	13.8436
GUGGGUGAACAUCAGUGAGGCGCACUCGCGAUGGCCGCUC	chr21:45560805-45561060(+)$1	255	133	173	13.4784
CUGGAUAGAAGGGCCAGUGAGGAGAUGCCCAUCCUCCAGG	chr22:50018026-50018238(-)$1	212	84	124	12.5249
AGUGGGAGGUUGGGGGUGUCGCUAGGCGCCCUUAGCUCCC	chr1:155658010-155658348(-)$1	338	147	187	12.4294
GUCACACUGGGCCUCUUGGCUCUCCAUGGAGCUCAGUGUG	chr17:80788091-80788385(+)$1	294	55	95	13.4810
AGGGGCUCUGUGUUUCGAGGAUGGUUCUAGCGCAGAGCCG	chr18:3451884-3452164(+)$1	280	73	113	13.3372
CCCCUGCGAGUUCUUCGUGGACAUCAUGUGACUCGUGGCG	chr1:1271450-1271727(-)$1	277	175	215	15.0462
AGGUGGACCCUCACUCUCAUUUCCUGGGGGCAGGGGCAAA	chr19:58991392-58991660(-)$1	268	95	135	12.9174
UCGCCGUCCUCGUCCUCGGUCUCCUCGUCCUCGGCCACGG	chr12:112036485-112036706(-)$1	221	24	64	15.3910
CCGUGGGGCUGGGCCCCAGCGUGCCUGUGCCCAGCAGGUC	chr1:36787827-36788081(+)$1	254	103	143	15.3487
GUUGGGGGUUCGAGGCUUGCAAGUACAGGGCUUGUAGCUC	chr15:80215165-80215442(-)$1	277	118	158	12.3527
UCGUUUGUUCCGUUUUCGCCUCCUGUAGAGCUGAACGGGA	chr12:62996653-62996982(+)$1	329	80	120	14.0604
CCGCGCCGGGACCAGGUGGGAGCCAGGGGGUGCCGGCGGG	chr3:50374562-50374874(-)$1	312	256	296	12.4837
cgcugucccgagcuggccggcgagcgggcggcugcgggcg	chr1:22263567-22263808(-)$1	241	4	44	13.3570
uugugggacugaaCUGAUAAUCCUUAAUUCAUCCUUUUGG	chr18:10526607-10526886(+)$1	279	181	221	11.8615
GCUUUGUCCUAAGUGGUCGCCACACGCCGUUUUAAGAGAA	chr19:541044-541307(+)$1	263	154	194	13.4646
GGUGGGGACGCUGCCUCCAGGUGACUUGGUUGUCCCCACC	chr5:884048-884265(-)$1	217	34	74	12.8152
GGGGAGAAGAAACCGGCCGUUCAGUGUGCUGGUUUUCUUG	chr17:7476604-7476859(+)$1	255	65	105	16.0048
UGAGAGUCCGUGCCGGGUGGAGCUCAGAAGGACAUGGGAU	chr12:111872655-111872890(+)$1	235	17	57	14.0118
CGAGUCACUUAGGGCCUCGCCGGGAGUUGCAGUGGCCGGG	chr19:798419-798763(+)$1	344	253	293	13.7660
GGGCCUGUGCUCUGGCGAAGCCCAUUGCUGGCCAUGGCCA	chr2:24239724-24240009(+)$1	285	133	173	11.5898
GAGGCGGCGGUGGUGGGCGGCAACGUGCUCACGUCGCAGC	chr8:145107296-145107543(-)$1	247	102	142	11.3366
CUUGGGCACACGGGUAGUCUGAAUGAGCACCGUGGUAGAG	chr7:127669182-127669434(+)$1	252	5	45	13.8201
GCUUGGGUGCUUUGGUCCUUUUGUGGGAACUAUAGUUUCC	chr20:32250010-32250258(-)$1	248	64	104	13.7193
GAUUCUUCUGCUGUUCGGCUGCGCGCUGACACGGGCGGGG	chr7:1498714-1498969(-)$1	255	173	213	12.4331
GUCGCCCACCUCGGGGCCCGUGGGCCGGCCUGGGGGGGUA	chr3:5229417-5229701(+)$1	284	231	271	10.7426
UCUGCGCUGGUCUGGCCACGUGCUUCCUGUGCUAGGAGCU	chr12:49523942-49524185(-)$1	243	93	133	12.2406
UCGCGAGCCACAUGUGUGACCCGGCAGGUGCUGAGCUCAU	chr1:1689814-1690095(-)$1	281	204	244	11.2398
AGGGUUAUCUGUUCCCACCGUCCUGGUUGGGCACAGUGAU	chr8:144909489-144909794(-)$1	305	16	56	12.1785
UUGCCGCGGCCGCCUUGUGUGUGCCAGGAGAGUGGCAGUG	chr10:74452357-74452641(+)$1	284	117	157	15.0554
GCCGCGGCUCUGGAGGGGAAGCAUCUGUGGGGGCCUGGUG	chr4:78740326-78740613(-)$1	287	30	70	10.8274
AGGAGCUCCGGCUUGGCAUCCACUGUGGCAGGUGCAGGGU	chr19:36526216-36526512(+)$1	296	150	190	15.0015
GCUGGUGGGCUGCAAAUCCAAGAAGGGGCUGUCCUCGUCC	chr9:133710735-133711015(+)$1	280	118	158	14.5841
AUAGCUGUUACCUCGACGAGUACAUCGCAAGGAUGGUUCA	chr16:2105264-2105566(+)$1	302	216	256	15.5924
CUUCCUGAGCUCUGCAGCGCUGGGUGGGCUGUGGAUGAUG	chr16:1421474-1421744(-)$1	270	75	115	11.9873
UUAUGUGCACAGUGGACGUGGAAGGCUUUGAUGAUGUUGG	chr22:50020419-50020645(-)$1	226	101	141	13.2935
GAGCAGGCAGGAGGUCUUCCCAGGGUAUGAGUCCUCCUGA	chr16:89643768-89644078(+)$1	310	41	81	12.1163
GCUGGCGCGCGCCCAGAGCCAGCCGCCUGCGCGCCGGGUU	chr11:61584269-61584515(+)$1	246	44	84	13.4494
AAAACCCCCCGUGUGGUCCUCCCUGGAAGGUGUUACGUGU	chr1:1499956-1500212(-)$1	256	83	123	12.2552
CCGGGGAGGAGGGCGGCGCGCGCGAGGGUCGCCUUCUUCC	chr12:123464886-123465170(+)$1	284	67	107	15.3392
AUGGCCGAGACUUCGGGCCCCAGCGGUCCGUGCACGGUCC	chr7:5460767-5461001(-)$1	234	128	168	13.4572

#DB
((((((((..((((..(((......)))..)))).)))))	chr12:62996855-62997115(+)$1	1	74	114	13.8027
..((((..(((((.((.((......)))).)))))..)))	chr19:10407024-10407254(+)$1	1	125	165	11.3939
(((.(((((.(((((.(((.....))))))))..))))).	chr22:50639562-50639858(+)$1	1	177	217	14.8075
))(((.(((..(((((((......)))))))...)).).)	chr19:47778071-47778313(+)$1	1	130	170	12.1659
(((((...((((..(((((.....)))))...))))..))	chr11:66392979-66393226(+)$1	1	179	219	12.8673
((.(((((((..((((.((.....)).))))..)))))))	chr16:2059374-2059630(-)$1	1	72	112	14.8977
(..(((((((((((.((((......))))..)).))))))	chr8:66753527-66753835(-)$1	1	11	51	11.9971
((((..((...((((..((.....))..))))...))...	chr19:2811949-2812266(+)$1	1	201	241	14.2770
(((.(((((.(((((.(((.....))))))))..))))).	chr22:50639692-50639906(+)$1	1	47	87	14.4285
(.(((((((((((...(((......)))..)))))).)))	chr22:18256213-18256483(-)$1	1	172	212	12.3515
((((((...(((.((.(((.....))).)).))).)))).	chr19:36517721-36517989(+)$1	1	164	204	14.5782
(.(((((.((((((...((.....)).)))))).).))))	chr1:54703741-54704049(-)$1	1	3	43	12.7676
(((((((.((((...((((.....))))...)))))))))	chr15:23086194-23086452(-)$1	1	81	121	14.1982
((((((((((.((.((.((.....))..)).)).))))).	chr16:89367025-89367337(-)$1	1	19	59	13.6225
(((((..((.((.((((((.....)))))))).)))))))	chr16:85392842-85393087(+)$1	1	177	217	11.4626
(..((((.(.(((((((((((...))))))))))).).))	chr10:70481118-70481409(+)$1	1	57	97	13.8436
(((((((..((((.(((((.....)))))))))..)))))	chr21:45560805-45561060(+)$1	1	133	173	13.4784
(((((..((.((((..((......)))))).)).))))))	chr22:50018026-50018238(-)$1	1	84	124	12.5249
.(.(((((.(((((((((((....))))))))))))))))	chr1:155658010-155658348(-)$1	1	147	187	12.4294
)(((((((((((.((((((....))).)))))))))))))	chr17:80788091-80788385(+)$1	1	55	95	13.4810
((((((((((((((..(((.....))).)))))))))))(	chr18:3451884-3452164(+)$1	1	73	113	13.3372
..((((((((((...((((.....)))).))))))))).)	chr1:1271450-1271727(-)$1	1	175	215	15.0462
.(((...((((..((((((.....))))))..))))...)	chr19:58991392-58991660(-)$1	1	95	135	12.9174
..(((((..(((....(((.....)))....)))..))))	chr12:112036485-112036706(-)$1	1	24	64	15.3910
(.((.(((((((((..(((.....))).)))))))....)	chr1:36787827-36788081(+)$1	1	103	143	15.3487
(..(((((((((((.((((......)))).)))).)))))	chr15:80215165-80215442(-)$1	1	118	158	12.3527
((..((((((.(((((.((.....))))))).))))))))	chr12:62996653-62996982(+)$1	1	80	120	14.0604
((.((((((.(((...(((...)))...))).))))))))	chr3:50374562-50374874(-)$1	1	256	296	12.4837
(((((.(((((((((.(((.....))).))))).))))))	chr1:22263567-22263808(-)$1	1	4	44	13.3570
(...((((.((((.(((......))).))))))))...))	chr18:10526607-10526886(+)$1	1	181	221	11.8615
..(((.((.((((.((.((.....))))..)))).)).))	chr19:541044-541307(+)$1	1	154	194	13.4646
((((((((((..(((...((....)).)))))))))))))	chr5:884048-884265(-)$1	1	34	74	12.8152
(..(((((..(((((((((.....)).)))))))))))).	chr17:7476604-7476859(+)$1	1	65	105	16.0048
((.(((((((((((...((.....))...)).))).))))	chr12:111872655-111872890(+)$1	1	17	57	14.0118
(..((((((..(.(.(((.....))).).)))))))..))	chr19:798419-798763(+)$1	1	253	293	13.7660
)))))).))))(((((((......)))))))(((((((((	chr2:24239724-24240009(+)$1	1	133	173	11.5898
(..((((((.(((.(.(((....))).))))))))))..)	chr8:145107296-145107543(-)$1	1	102	142	11.3366
((...((.(((((....((.....))...)))))))))))	chr7:127669182-127669434(+)$1	1	5	45	13.8201
))).(((.(((.(((((((.....))).)))).))).)))	chr20:32250010-32250258(-)$1	1	64	104	13.7193
(.((((((..(((((((((.....))))).))))..))))	chr7:1498714-1498969(-)$1	1	173	213	12.4331
(..((((.((((((((((....)))...))))))))))).	chr3:5229417-5229701(+)$1	1	231	271	10.7426
...(((((..((((((((.(.....).)).))))))))).	chr12:49523942-49524185(-)$1	1	93	133	12.2406
((..(((((((((.(((......))).))).)).))))..	chr1:1689814-1690095(-)$1	1	204	244	11.2398
...((((.((((.((((((.....)).)))).))))))))	chr8:144909489-144909794(-)$1	1	16	56	12.1785
(.(((((.((((((((.((.....)).))).))))).)))	chr10:74452357-74452641(+)$1	1	117	157	15.0554
((((.((((((.(.(((......))).).))))))))))(	chr4:78740326-78740613(-)$1	1	30	70	10.8274
((((.((...(((((.(((.....))).)))))...)).)	chr19:36526216-36526512(+)$1	1	150	190	15.0015
(((((.((((.(((..(((.....)))..)))....))))	chr9:133710735-133711015(+)$1	1	118	158	14.5841
...((((..(((((..(((.....)))....)).))).))	chr16:2105264-2105566(+)$1	1	216	256	15.5924
(((((((...((((((((.(.....).))))))))...))	chr16:1421474-1421744(-)$1	1	75	115	11.9873
((((..(((..((.((.((.....)).)).))..)))..)	chr22:50020419-50020645(-)$1	1	101	141	13.2935
(.((...(((((((.(((((...))...))).))))))).	chr16:89643768-89644078(+)$1	1	41	81	12.1163
((((((.(((((.(((.((.....))))).))).)).)).	chr11:61584269-61584515(+)$1	1	44	84	13.4494
.......))))).)))(((.....)))(((.((((.((((	chr1:1499956-1500212(-)$1	1	83	123	12.2552
((.((((((((((((((.(......).)))))))))))))	chr12:123464886-123465170(+)$1	1	67	107	15.3392
..(((((.(....((((((.....))))))..).))))).	chr7:5460767-5461001(-)$1	1	128	168	13.4572

#PSSM
c : 0.17	e : 0.10	d : 0.10	b : 0.07	f : 0.07	g : 0.07	i : 0.05	! : 0.05	a : 0.05	[ : 0.03	= : 0.03	# : 0.03	B : 0.01	C : 0.01	$ : 0.01	h : 0.01	" : 0.01	' : 0.01	z : 0.01	
! : 0.17	c : 0.12	e : 0.08	[ : 0.08	d : 0.07	g : 0.07	i : 0.05	f : 0.05	= : 0.03	# : 0.03	" : 0.03	b : 0.03	: : 0.01	a : 0.01	C : 0.01	$ : 0.01	h : 0.01	' : 0.01	z : 0.01	
! : 0.16	d : 0.10	e : 0.10	c : 0.08	[ : 0.08	f : 0.07	g : 0.07	i : 0.05	b : 0.05	" : 0.05	= : 0.03	C : 0.01	a : 0.01	h : 0.01	' : 0.01	# : 0.01	z : 0.01	
d : 0.16	e : 0.14	f : 0.14	g : 0.10	i : 0.08	= : 0.07	b : 0.07	c : 0.05	[ : 0.03	! : 0.03	" : 0.03	h : 0.01	: : 0.01	z : 0.01	
d : 0.16	e : 0.16	f : 0.14	g : 0.10	i : 0.07	c : 0.07	= : 0.07	" : 0.05	[ : 0.05	! : 0.03	b : 0.03	h : 0.01	z : 0.01	
d : 0.16	e : 0.14	f : 0.14	i : 0.07	[ : 0.07	g : 0.07	! : 0.07	= : 0.07	b : 0.07	" : 0.05	c : 0.05	z : 0.01	
e : 0.14	d : 0.14	f : 0.12	b : 0.08	i : 0.07	" : 0.07	g : 0.07	= : 0.07	c : 0.07	! : 0.05	a : 0.03	] : 0.01	[ : 0.01	z : 0.01	
[ : 0.16	f : 0.14	e : 0.10	b : 0.10	d : 0.10	! : 0.07	" : 0.07	g : 0.07	= : 0.07	i : 0.05	c : 0.03	
f : 0.14	! : 0.12	e : 0.12	d : 0.12	b : 0.08	g : 0.08	" : 0.07	= : 0.07	[ : 0.05	i : 0.03	a : 0.03	c : 0.03	
d : 0.17	! : 0.12	[ : 0.12	c : 0.10	e : 0.08	g : 0.08	= : 0.08	f : 0.07	" : 0.05	i : 0.03	b : 0.01	# : 0.01	
d : 0.21	c : 0.16	e : 0.14	! : 0.08	= : 0.08	f : 0.07	g : 0.07	[ : 0.05	i : 0.03	" : 0.01	b : 0.01	h : 0.01	# : 0.01	
d : 0.19	e : 0.16	c : 0.16	g : 0.10	= : 0.08	! : 0.05	f : 0.05	b : 0.05	i : 0.03	[ : 0.03	a : 0.01	h : 0.01	# : 0.01	
d : 0.17	e : 0.14	g : 0.10	[ : 0.10	b : 0.08	c : 0.08	= : 0.07	f : 0.05	! : 0.03	" : 0.03	# : 0.03	a : 0.01	h : 0.01	] : 0.01	
[ : 0.16	d : 0.14	g : 0.10	c : 0.10	e : 0.08	f : 0.08	b : 0.07	" : 0.07	= : 0.07	# : 0.03	! : 0.01	a : 0.01	h : 0.01	
e : 0.14	c : 0.14	! : 0.10	" : 0.10	b : 0.08	g : 0.07	d : 0.07	[ : 0.07	f : 0.07	= : 0.05	# : 0.03	a : 0.01	h : 0.01	
c : 0.17	! : 0.12	d : 0.12	[ : 0.10	" : 0.08	b : 0.07	e : 0.07	f : 0.07	g : 0.05	= : 0.05	# : 0.03	h : 0.01	
c : 0.41	[ : 0.14	d : 0.08	g : 0.05	e : 0.05	" : 0.05	f : 0.05	= : 0.05	b : 0.03	! : 0.01	# : 0.01	h : 0.01	
c : 0.35	b : 0.28	d : 0.07	e : 0.05	f : 0.05	o : 0.05	g : 0.03	= : 0.03	" : 0.01	h : 0.01	[ : 0.01	
c : 0.30	b : 0.28	o : 0.10	d : 0.07	e : 0.05	f : 0.05	= : 0.03	[ : 0.03	n : 0.01	m : 0.01	a : 0.01	
n : 0.60	o : 0.21	m : 0.05	= : 0.03	b : 0.03	a : 0.03	l : 0.01	
n : 0.64	o : 0.21	m : 0.08	l : 0.03	= : 0.01	
n : 0.64	o : 0.21	m : 0.08	l : 0.05	
n : 0.64	o : 0.21	m : 0.07	l : 0.03	c : 0.03	
n : 0.62	o : 0.16	c : 0.14	m : 0.03	l : 0.01	b : 0.01	
c : 0.35	b : 0.28	o : 0.10	e : 0.05	f : 0.05	g : 0.03	d : 0.03	= : 0.03	n : 0.03	
c : 0.35	b : 0.28	d : 0.07	e : 0.05	f : 0.05	3 : 0.05	a : 0.05	g : 0.03	= : 0.03	
] : 0.28	c : 0.26	d : 0.08	3 : 0.08	e : 0.07	f : 0.05	b : 0.03	g : 0.03	2 : 0.03	= : 0.03	
c : 0.14	d : 0.14	e : 0.10	] : 0.10	3 : 0.08	b : 0.07	f : 0.07	g : 0.05	2 : 0.05	= : 0.05	a : 0.05	4 : 0.03	h : 0.01	
c : 0.16	e : 0.14	d : 0.14	b : 0.08	g : 0.08	2 : 0.07	f : 0.07	= : 0.07	3 : 0.05	] : 0.05	4 : 0.03	h : 0.01	
c : 0.16	d : 0.12	] : 0.10	e : 0.10	g : 0.08	f : 0.08	2 : 0.07	= : 0.07	b : 0.05	3 : 0.03	4 : 0.03	i : 0.01	a : 0.01	h : 0.01	
d : 0.17	e : 0.12	= : 0.10	g : 0.08	f : 0.08	] : 0.08	c : 0.08	2 : 0.05	b : 0.05	3 : 0.03	4 : 0.03	i : 0.01	h : 0.01	[ : 0.01	
d : 0.17	e : 0.12	b : 0.12	f : 0.10	= : 0.10	] : 0.08	c : 0.07	g : 0.07	2 : 0.05	3 : 0.03	i : 0.01	h : 0.01	
d : 0.19	f : 0.14	= : 0.10	e : 0.08	b : 0.08	g : 0.08	2 : 0.07	c : 0.07	3 : 0.03	] : 0.03	i : 0.01	4 : 0.01	h : 0.01	a : 0.01	
d : 0.17	] : 0.16	f : 0.12	g : 0.10	= : 0.10	2 : 0.07	c : 0.07	e : 0.05	3 : 0.05	b : 0.01	i : 0.01	4 : 0.01	h : 0.01	
d : 0.14	e : 0.12	f : 0.12	g : 0.10	= : 0.10	] : 0.07	b : 0.07	c : 0.07	2 : 0.05	i : 0.03	3 : 0.03	a : 0.01	4 : 0.01	h : 0.01	
e : 0.14	d : 0.14	g : 0.12	f : 0.10	b : 0.08	= : 0.07	i : 0.05	2 : 0.05	] : 0.05	3 : 0.05	c : 0.05	4 : 0.03	[ : 0.01	
e : 0.16	d : 0.14	g : 0.12	] : 0.08	f : 0.08	b : 0.07	= : 0.07	i : 0.05	2 : 0.05	3 : 0.05	c : 0.05	a : 0.01	4 : 0.01	
e : 0.17	d : 0.16	g : 0.12	2 : 0.07	3 : 0.07	= : 0.07	f : 0.07	i : 0.05	] : 0.05	b : 0.05	c : 0.05	a : 0.01	4 : 0.01	
d : 0.23	e : 0.19	g : 0.10	c : 0.10	= : 0.07	i : 0.05	] : 0.05	3 : 0.05	f : 0.03	2 : 0.03	4 : 0.01	h : 0.01	b : 0.01	
d : 0.19	c : 0.12	e : 0.10	] : 0.08	g : 0.08	i : 0.07	2 : 0.07	3 : 0.05	= : 0.05	f : 0.05	b : 0.03	C : 0.01	a : 0.01	h : 0.01	

#score	743.8557977844629
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_UTR_m1_run1.txt

#BEAR
!!dddd[dddd[a!!bb[cccooooooccc]bb22a]dd	chr17:66031922-66032178(+)$1	256	154	193	12.1530
ffffdddd[eeeee!!arrrrrrrrra22eeeee22ddd	chr3:100428670-100428988(+)$1	318	116	155	12.0412
ggggg!!gggggggbbqqqqqqqqbb22ggggggg]ggg	chr11:62609091-62609322(-)$1	231	14	53	13.9299
dd[cccgggggggffffff[bblllbb]ffffff]gggg	chr1:32832198-32832472(-)$1	274	197	236	12.6189
####ccc"""a!!dddd[annnnna]dddd22a22ccc3	chr1:245026262-245026521(-)$1	259	41	80	12.0642
gggggg!!eeeee"""cccnnnnnccc22eeeee22ggg	chr12:56554868-56555123(+)$1	255	31	70	14.8189
ggg####ccc[ccc!!eeeeellleeeeeccc]cccggg	chr7:5569356-5569623(-)$1	267	127	166	12.7945
[a[bb"""bb[ffffff[ccclllccc]ffffff22bb3	chr17:74732714-74732970(-)$1	256	54	93	14.8702
ggggg!!gggggggbbqqqqqqqqbb22ggggggg]ggg	chr11:62609122-62609357(-)$1	235	49	88	13.9299
iiiiiii####ggggggg[bblllbb]ggggggg22iii	chr17:46053121-46053361(+)$1	240	36	75	16.5035
ddd::ggggggg[ccc[ddddooooooddddccc22ggg	chr19:18682642-18682916(+)$1	274	158	197	11.4692
dddd[a!!==========[bblllbb]==========22	chr17:26940991-26941300(-)$1	309	187	226	15.1589

#otherMatches

#Seq PSSM
UUGACUAGGCCUCGGGGGCGACGUUCAUUGACCAGGCGG	chr17:66031922-66032178(+)$1	256	154	193	12.1530
GGUCGCGGAGGGGGAGGGGAGAGAGGCAACCCCUGGCUG	chr3:100428670-100428988(+)$1	318	116	155	12.0412
GGCCGCCGAGGCGACCGAAGUAAAGGUaucgcuucucgg	chr11:62609091-62609322(-)$1	231	14	53	13.9299
UUACCCCCUCCCAUUUGCAGCUGGAAGAUGUAGAGUGGG	chr1:32832198-32832472(-)$1	274	197	236	12.6189
UAUUGUGCAAGGAGCGCAGGGGCUCGGCGUGACGUCACU	chr1:245026262-245026521(-)$1	259	41	80	12.0642
CAGUAGCUGUAGGUGUAGUGGAGAACUUUUCUGCCUCUG	chr12:56554868-56555123(+)$1	255	31	70	14.8189
GGGGCCUGGCUUCCUGCCGCGCGCCGCGGGGACGCCUCC	chr7:5569356-5569623(-)$1	267	127	166	12.7945
GUACGGGGGCGGUGGCUACGGACGCCGGAGCCGCAGGUA	chr17:74732714-74732970(-)$1	256	54	93	14.8702
GGCCGCCGAGGCGACCGAAGUAAAGGUaucgcuucucgg	chr11:62609122-62609357(-)$1	235	49	88	13.9299
CCAUGUGGCCCAGGCCAAAGCCCAGUGUUGGCCUUACGC	chr17:46053121-46053361(+)$1	240	36	75	16.5035
CUCAUGCGGGCCAGUCUCGGCAGGGUGGCUGGGCAGGGC	chr19:18682642-18682916(+)$1	274	158	197	11.4692
CCUCACAAGGUAGGCUGUGGGGCUCUGGCAGCCUACUGA	chr17:26940991-26941300(-)$1	309	187	226	15.1589

#DB
..((((.((((.(..((.(((......))).))..).))	chr17:66031922-66032178(+)$1	1	154	193	12.1530
))))((((.(((((..(.........)..)))))..)))	chr3:100428670-100428988(+)$1	1	116	155	12.0412
(((((..(((((((((........))..))))))).)))	chr11:62609091-62609322(-)$1	1	14	53	13.9299
((.((((((((((((((((.((...)).)))))).))))	chr1:32832198-32832472(-)$1	1	197	236	12.6189
....(((...(..((((.(.....).))))..)..))).	chr1:245026262-245026521(-)$1	1	41	80	12.0642
((((((..(((((...(((.....)))..)))))..)))	chr12:56554868-56555123(+)$1	1	31	70	14.8189
(((....(((.(((..(((((...)))))))).))))))	chr7:5569356-5569623(-)$1	1	127	166	12.7945
.(.((...((.((((((.(((...))).))))))..)).	chr17:74732714-74732970(-)$1	1	54	93	14.8702
(((((..(((((((((........))..))))))).)))	chr11:62609122-62609357(-)$1	1	49	88	13.9299
(((((((....(((((((.((...)).)))))))..)))	chr17:46053121-46053361(+)$1	1	36	75	16.5035
)))..(((((((.(((.((((......)))))))..)))	chr19:18682642-18682916(+)$1	1	158	197	11.4692
((((.(..((((((((((.((...)).))))))))))..	chr17:26940991-26941300(-)$1	1	187	226	15.1589

#PSSM
g : 0.33	d : 0.25	! : 0.08	f : 0.08	# : 0.08	[ : 0.08	i : 0.08	
g : 0.33	d : 0.25	! : 0.08	f : 0.08	# : 0.08	a : 0.08	i : 0.08	
g : 0.33	d : 0.25	[ : 0.16	f : 0.08	# : 0.08	i : 0.08	
g : 0.25	d : 0.16	# : 0.16	f : 0.08	c : 0.08	b : 0.08	i : 0.08	: : 0.08	
g : 0.25	d : 0.16	c : 0.16	# : 0.08	b : 0.08	i : 0.08	: : 0.08	[ : 0.08	
d : 0.16	! : 0.16	c : 0.16	g : 0.16	# : 0.08	" : 0.08	i : 0.08	a : 0.08	
! : 0.33	g : 0.16	[ : 0.08	d : 0.08	c : 0.08	# : 0.08	" : 0.08	i : 0.08	
g : 0.33	d : 0.16	" : 0.16	! : 0.16	c : 0.08	# : 0.08	
g : 0.33	d : 0.08	[ : 0.08	" : 0.08	e : 0.08	c : 0.08	b : 0.08	# : 0.08	= : 0.08	
g : 0.33	e : 0.16	d : 0.08	" : 0.08	c : 0.08	b : 0.08	# : 0.08	= : 0.08	
g : 0.33	e : 0.16	[ : 0.16	d : 0.08	a : 0.08	# : 0.08	= : 0.08	
g : 0.41	e : 0.16	[ : 0.08	! : 0.08	c : 0.08	f : 0.08	= : 0.08	
g : 0.33	e : 0.16	a : 0.08	! : 0.08	c : 0.08	f : 0.08	[ : 0.08	= : 0.08	
g : 0.25	f : 0.16	c : 0.16	! : 0.08	e : 0.08	d : 0.08	" : 0.08	= : 0.08	
! : 0.25	b : 0.16	f : 0.16	d : 0.08	" : 0.08	g : 0.08	c : 0.08	= : 0.08	
b : 0.25	! : 0.16	f : 0.16	d : 0.08	" : 0.08	g : 0.08	c : 0.08	= : 0.08	
q : 0.16	f : 0.16	b : 0.08	a : 0.08	d : 0.08	c : 0.08	e : 0.08	g : 0.08	[ : 0.08	= : 0.08	
[ : 0.25	q : 0.16	r : 0.08	f : 0.08	c : 0.08	e : 0.08	g : 0.08	d : 0.08	= : 0.08	
c : 0.25	q : 0.16	[ : 0.16	r : 0.08	f : 0.08	a : 0.08	e : 0.08	d : 0.08	
c : 0.16	q : 0.16	n : 0.16	b : 0.16	r : 0.08	[ : 0.08	e : 0.08	d : 0.08	
b : 0.25	c : 0.16	q : 0.16	n : 0.16	r : 0.08	e : 0.08	d : 0.08	
l : 0.33	o : 0.16	q : 0.16	n : 0.16	r : 0.08	b : 0.08	
l : 0.41	o : 0.16	q : 0.16	n : 0.16	r : 0.08	
l : 0.41	o : 0.16	q : 0.16	n : 0.16	r : 0.08	
b : 0.33	o : 0.16	c : 0.16	r : 0.08	l : 0.08	a : 0.08	e : 0.08	
b : 0.41	o : 0.16	c : 0.16	r : 0.08	] : 0.08	e : 0.08	
o : 0.16	2 : 0.16	c : 0.16	] : 0.16	a : 0.08	b : 0.08	d : 0.08	e : 0.08	
2 : 0.33	] : 0.16	d : 0.16	c : 0.08	e : 0.08	g : 0.08	= : 0.08	
g : 0.25	2 : 0.16	f : 0.16	d : 0.16	c : 0.08	e : 0.08	= : 0.08	
g : 0.25	c : 0.16	e : 0.16	f : 0.16	d : 0.16	= : 0.08	
g : 0.25	e : 0.16	f : 0.16	] : 0.08	2 : 0.08	c : 0.08	d : 0.08	= : 0.08	
g : 0.25	e : 0.16	f : 0.16	c : 0.16	b : 0.08	2 : 0.08	= : 0.08	
g : 0.25	e : 0.16	f : 0.16	b : 0.08	a : 0.08	] : 0.08	c : 0.08	= : 0.08	
g : 0.25	2 : 0.16	e : 0.16	f : 0.16	c : 0.16	= : 0.08	
2 : 0.58	g : 0.16	] : 0.08	c : 0.08	= : 0.08	
2 : 0.41	] : 0.16	c : 0.16	a : 0.08	g : 0.08	= : 0.08	
g : 0.49	] : 0.08	d : 0.08	c : 0.08	b : 0.08	i : 0.08	= : 0.08	
g : 0.49	d : 0.16	c : 0.08	b : 0.08	i : 0.08	2 : 0.08	
g : 0.49	d : 0.16	3 : 0.16	i : 0.08	2 : 0.08	

#score	162.3529759735583
#seq	12
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_UTR_m2_run2.txt

#BEAR
ddd[eeeeellleeeeedddd	chr17:8076800-8077005(-)$1	205	124	145	10.2828
hhh!!ddddmmmmdddd4444	chr18:47017992-47018199(-)$1	207	26	47	7.5143
ccc[eeeeellleeeee]ccc	chr15:25227040-25227245(+)$1	205	135	156	11.3461
deeeeeooooooeeeee22dd	chr11:122930024-122930231(-)$1	207	100	121	7.5509
a[cccddddllldddd22ccc	chr8:134250822-134251065(-)$1	243	95	116	8.8438
ddd[eeeeellleeeeedddd	chr11:68201145-68201387(+)$1	242	102	123	10.2828
ccc[ddddnnnnndddd]ccc	chr14:95089953-95090230(+)$1	277	109	130	7.8044
hhh!!ddddmmmmdddd4444	chr18:47017987-47018192(-)$1	205	19	40	7.5143
ccc[eeeeellleeeee]ccc	chr15:25227070-25227283(+)$1	213	105	126	11.3461
ffffeeeeeooooooeeeee5	chr6:31804756-31804977(+)$1	221	17	38	7.3243
ddd[eeeeellleeeee8888	chr17:27050607-27050834(+)$1	227	79	100	10.0318
!!eeeeennnnneeeee22ee	chr1:230849731-230849993(-)$1	262	195	216	7.6415
ccc[eeeee"""ffffff!!a	chr17:27047501-27047732(+)$1	231	54	75	5.5906
ccc[cccnnnnnccc333ccc	chr6:31903634-31903888(+)$1	254	191	212	6.7312
ddd[eeeeellleeeeedddd	chr17:8076761-8077000(-)$1	239	119	140	10.2828
=====[ccclllccc333===	chr11:75111334-75111576(+)$1	242	66	87	7.9243
ffffeeeeeooooooeeeee5	chr6:31804750-31804954(+)$1	204	23	44	7.3243
!!bb[ddddllldddd]bb22	chr6:31802966-31803176(+)$1	210	105	126	7.6855
ccc[eeeeellleeeee]ccc	chr15:25227045-25227270(+)$1	225	130	151	11.3461
"""eeeeemmmmeeeee]ccc	chr8:11704493-11704767(-)$1	274	25	46	8.1685
fffffddddllldddd>>>>>	chr20:23614226-23614482(-)$1	256	91	112	8.1275
!dddd[ccclllccc]ddddc	chr6:31804777-31804981(+)$1	204	8	29	7.1387
ddd[eeeeellleeeee8888	chr17:27050634-27050863(+)$1	229	52	73	10.0318
"""ddddoooooodddd333h	chr17:79803646-79803859(-)$1	213	75	96	7.3658
!!bb[ddddllldddd]bb22	chr6:31802963-31803166(+)$1	203	108	129	7.6855
ccc[eeeee"""ffffff!!a	chr17:27047482-27047701(+)$1	219	73	94	5.5906
ggggeeeeeooooooeeeee:	chr3:96336128-96336392(-)$1	264	176	197	7.3510

#otherMatches

#Seq PSSM
uguuccuccuccggagggcag	chr17:8076800-8077005(-)$1	205	124	145	10.2828
UACUUCUGUGGAAGCAGUGCU	chr18:47017992-47018199(-)$1	207	26	47	7.5143
UGAUUUCAAAAUUUGAGCUUA	chr15:25227040-25227245(+)$1	205	135	156	11.3461
Cucgcugugaugagugauugu	chr11:122930024-122930231(-)$1	207	100	121	7.5509
GAGGUCUAUUACGUGGGUGCC	chr8:134250822-134251065(-)$1	243	95	116	8.8438
CCUGCGCUGCGACGGCGAGGC	chr11:68201145-68201387(+)$1	242	102	123	10.2828
UCAACAGGCCCUUCCUGAUGA	chr14:95089953-95090230(+)$1	277	109	130	7.8044
UACUUCUGUGGAAGCAGUGCU	chr18:47017987-47018192(-)$1	205	19	40	7.5143
UGAUUUCAAAAUUUGAGCUUA	chr15:25227070-25227283(+)$1	213	105	126	11.3461
UACUGGGACUGUUGUGUUUUC	chr6:31804756-31804977(+)$1	221	17	38	7.3243
UGCUCACCCCUUGGGUGCAAA	chr17:27050607-27050834(+)$1	227	79	100	10.0318
CUUGUCUCUCUCAGAUGUAAC	chr1:230849731-230849993(-)$1	262	195	216	7.6415
GCCUCUGGUAUCGUGCAUAUG	chr17:27047501-27047732(+)$1	231	54	75	5.5906
GCCAACUAUAAAGGUACGGGU	chr6:31903634-31903888(+)$1	254	191	212	6.7312
uguuccuccuccggagggcag	chr17:8076761-8077000(-)$1	239	119	140	10.2828
GUUUCUUGUUUUGCAUGUGGA	chr11:75111334-75111576(+)$1	242	66	87	7.9243
UACUGGGACUGUUGUGUUUUC	chr6:31804750-31804954(+)$1	204	23	44	7.3243
GUCGCUGAUGCCAUCACCGCA	chr6:31802966-31803176(+)$1	210	105	126	7.6855
UGAUUUCAAAAUUUGAGCUUA	chr15:25227045-25227270(+)$1	225	130	151	11.3461
GACCGUGGCGUGCCACGAGGC	chr8:11704493-11704767(-)$1	274	25	46	8.1685
GCAAGGGGCUCUGCCCUCCCU	chr20:23614226-23614482(-)$1	256	91	112	8.1275
UGUGUUUUCUUUGAGUGUACU	chr6:31804777-31804981(+)$1	204	8	29	7.1387
UGCUCACCCCUUGGGUGCAAA	chr17:27050634-27050863(+)$1	229	52	73	10.0318
GGCUUUUGAUGAGAAAAAAAA	chr17:79803646-79803859(-)$1	213	75	96	7.3658
GUCGCUGAUGCCAUCACCGCA	chr6:31802963-31803166(+)$1	203	108	129	7.6855
GCCUCUGGUAUCGUGCAUAUG	chr17:27047482-27047701(+)$1	219	73	94	5.5906
GAGGCACCGCCUGCCCGGUGA	chr3:96336128-96336392(-)$1	264	176	197	7.3510

#DB
(((.(((((...)))))))))	chr17:8076800-8077005(-)$1	1	124	145	10.2828
(((..((((....))))....	chr18:47017992-47018199(-)$1	1	26	47	7.5143
(((.(((((...))))).)))	chr15:25227040-25227245(+)$1	1	135	156	11.3461
((((((......)))))..))	chr11:122930024-122930231(-)$1	1	100	121	7.5509
(.(((((((...))))..)))	chr8:134250822-134251065(-)$1	1	95	116	8.8438
(((.(((((...)))))))))	chr11:68201145-68201387(+)$1	1	102	123	10.2828
(((.((((.....)))).)))	chr14:95089953-95090230(+)$1	1	109	130	7.8044
(((..((((....))))....	chr18:47017987-47018192(-)$1	1	19	40	7.5143
(((.(((((...))))).)))	chr15:25227070-25227283(+)$1	1	105	126	11.3461
(((((((((......))))).	chr6:31804756-31804977(+)$1	1	17	38	7.3243
(((.(((((...)))))....	chr17:27050607-27050834(+)$1	1	79	100	10.0318
..(((((.....)))))..))	chr1:230849731-230849993(-)$1	1	195	216	7.6415
(((.(((((...((((((..(	chr17:27047501-27047732(+)$1	1	54	75	5.5906
(((.(((.....)))...)))	chr6:31903634-31903888(+)$1	1	191	212	6.7312
(((.(((((...)))))))))	chr17:8076761-8077000(-)$1	1	119	140	10.2828
(((((.(((...)))...)))	chr11:75111334-75111576(+)$1	1	66	87	7.9243
(((((((((......))))).	chr6:31804750-31804954(+)$1	1	23	44	7.3243
..((.((((...)))).))..	chr6:31802966-31803176(+)$1	1	105	126	7.6855
(((.(((((...))))).)))	chr15:25227045-25227270(+)$1	1	130	151	11.3461
...(((((....))))).)))	chr8:11704493-11704767(-)$1	1	25	46	8.1685
(((((((((...)))).....	chr20:23614226-23614482(-)$1	1	91	112	8.1275
.((((.(((...))).)))))	chr6:31804777-31804981(+)$1	1	8	29	7.1387
(((.(((((...)))))....	chr17:27050634-27050863(+)$1	1	52	73	10.0318
...((((......))))...)	chr17:79803646-79803859(-)$1	1	75	96	7.3658
..((.((((...)))).))..	chr6:31802963-31803166(+)$1	1	108	129	7.6855
(((.(((((...((((((..(	chr17:27047482-27047701(+)$1	1	73	94	5.5906
))))(((((......))))).	chr3:96336128-96336392(-)$1	1	176	197	7.3510

#PSSM
c : 0.25	d : 0.22	! : 0.14	f : 0.11	h : 0.07	" : 0.07	a : 0.03	= : 0.03	g : 0.03	
c : 0.25	d : 0.22	f : 0.11	! : 0.11	h : 0.07	" : 0.07	e : 0.03	[ : 0.03	= : 0.03	g : 0.03	
c : 0.29	d : 0.22	f : 0.11	h : 0.07	e : 0.07	b : 0.07	" : 0.07	= : 0.03	g : 0.03	
[ : 0.44	e : 0.11	f : 0.11	! : 0.07	b : 0.07	d : 0.07	c : 0.03	= : 0.03	g : 0.03	
e : 0.59	d : 0.11	! : 0.07	c : 0.07	[ : 0.07	= : 0.03	f : 0.03	
e : 0.59	d : 0.29	[ : 0.07	c : 0.03	
e : 0.55	d : 0.29	c : 0.11	o : 0.03	
e : 0.51	d : 0.25	o : 0.07	n : 0.07	c : 0.07	
e : 0.48	d : 0.22	n : 0.11	o : 0.07	c : 0.07	m : 0.03	
l : 0.51	o : 0.18	m : 0.11	n : 0.11	" : 0.07	
l : 0.51	o : 0.18	m : 0.11	n : 0.11	" : 0.07	
l : 0.51	o : 0.18	m : 0.11	n : 0.11	" : 0.07	
e : 0.40	d : 0.14	o : 0.14	c : 0.11	m : 0.07	f : 0.07	n : 0.03	
e : 0.40	d : 0.29	o : 0.11	c : 0.11	f : 0.07	
e : 0.40	d : 0.29	o : 0.11	c : 0.11	f : 0.07	
e : 0.51	d : 0.29	f : 0.07	3 : 0.07	] : 0.03	
e : 0.51	d : 0.18	f : 0.07	3 : 0.07	] : 0.07	2 : 0.03	> : 0.03	
] : 0.18	d : 0.14	2 : 0.11	e : 0.11	3 : 0.11	4 : 0.07	8 : 0.07	f : 0.07	b : 0.07	> : 0.03	
c : 0.25	d : 0.14	e : 0.11	4 : 0.07	2 : 0.07	8 : 0.07	! : 0.07	b : 0.07	= : 0.03	> : 0.03	3 : 0.03	
c : 0.25	d : 0.18	e : 0.14	4 : 0.07	8 : 0.07	! : 0.07	2 : 0.07	= : 0.03	> : 0.03	3 : 0.03	
c : 0.29	d : 0.14	4 : 0.07	5 : 0.07	8 : 0.07	a : 0.07	2 : 0.07	e : 0.03	= : 0.03	> : 0.03	h : 0.03	: : 0.03	

#score	225.82846044441848
#seq	27
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF327WXM_ZC3H11A_transcript_m1_run2.txt

#BEAR
dd^^^^^^^^^^^^^^^^^^dddd444	chr3:152558511-152558772(+)$1	261	63	90	17.9788
iiiiiiiitttttttttttiiiiiiii	chr2:55199829-55200091(-)$1	262	62	89	19.7997
cc[cccvvvvvvvvvvvvvccc]ccc:	chr16:238918-239196(-)$1	278	24	51	22.9282
ffffffuuuuuuuuuuuuffffff444	chr12:116397225-116397482(-)$1	257	202	229	21.2146
ff[cccxxxxxxxxxxxxxxxccc]ff	chr16:28848182-28848477(+)$1	295	242	269	18.1261
a[cccwwwwwwwwwwwwwwccc]a333	chr4:17838677-17838917(+)$1	240	15	42	23.3938
^^^^^^^^^^^^^^^^^^^eeeee333	chr6:160176720-160177029(+)$1	309	105	132	17.9908
ee"""bbuuuuuuuuuuuubb]eeeee	chr11:9302395-9302686(-)$1	291	191	218	21.4922
ddddyyyyyyyyyyyyyyyydddd]bb	chr3:152558572-152558819(+)$1	247	93	120	21.2213
dd^^^^^^^^^^^^^^^^^^dddd]ff	chr8:23429775-23430017(+)$1	242	61	88	17.8609
ff[cccvvvvvvvvvvvvvcccfffff	chr3:43761029-43761270(+)$1	241	42	69	23.2308
==ddddvvvvvvvvvvvvvdddd7777	chr15:40512663-40512916(+)$1	253	210	237	21.5452
d^^^^^^^^^^^^^^^^^^^dddd]gg	chr1:247350661-247350982(-)$1	321	270	297	18.0806
eeeeeevvvvvvvvvvvvveeeee]ee	chr18:211216-211508(+)$1	292	49	76	23.4716
!!ddddvvvvvvvvvvvvvdddd4444	chrX:19377506-19377776(+)$1	270	207	234	23.9889
ddddbbtttttttttttbb]dddd]gg	chr1:234742314-234742589(-)$1	275	129	156	19.7227
ggaeeeeettttttttttteeeee]a]	chr12:22843070-22843334(+)$1	264	85	112	20.3917
"""cccvvvvvvvvvvvvvccc]ccc:	chr12:69667881-69668157(+)$1	276	130	157	23.0413
cc[ccctttttttttttccc]ccc444	chr19:59060610-59060862(+)$1	252	151	178	20.7426
gggggguuuuuuuuuuuuggggggg::	chr4:1981077-1981351(+)$1	274	124	151	19.8498
======ttttttttttt==========	chr8:26227914-26228156(+)$1	242	129	156	20.4391
!!cccxxxxxxxxxxxxxxxccc22ee	chr18:9954312-9954593(+)$1	281	223	250	18.3916
fff[bbwwwwwwwwwwwwwwbb]ffff	chr12:56990009-56990261(-)$1	252	84	111	21.1434
ddddyyyyyyyyyyyyyyyydddd]cc	chr3:10142855-10143091(+)$1	236	95	122	21.6911
eeddddvvvvvvvvvvvvvdddd]eee	chrX:153671437-153671682(+)$1	245	96	123	23.1688
^^^^^^^^^^^^^^^^^^^ccc333cc	chr15:91464057-91464313(+)$1	256	218	245	18.0914
fffffftttttttttttffffff22ee	chr15:52839373-52839639(-)$1	266	184	211	18.7514
cc!!ddddtttttttttttdddd22cc	chr20:60757268-60757532(+)$1	264	106	133	20.4575
hhddddwwwwwwwwwwwwwwdddd]hh	chrX:152481577-152481821(-)$1	244	73	100	21.8909
^^^^^^^^^^^^^^^^^^^========	chr5:180682122-180682401(-)$1	279	54	81	17.7617
d[ddddvvvvvvvvvvvvvdddddddd	chr3:160152416-160152774(+)$1	358	12	39	22.9571
gggggguuuuuuuuuuuuggggggg::	chr2:183790122-183790393(-)$1	271	142	169	19.8498
##ddddvvvvvvvvvvvvvdddd====	chr15:50852551-50852825(-)$1	274	111	138	23.6928
eeeeewwwwwwwwwwwwwweeeeeccc	chr6:99847859-99848134(-)$1	275	229	256	22.3267
ddd[cccuuuuuuuuuuuuccc]dddd	chr17:40463756-40464031(+)$1	275	67	94	22.1279
ff[cccxxxxxxxxxxxxxxxccc]ff	chr16:28848287-28848533(+)$1	246	137	164	18.1261
ffffffvvvvvvvvvvvvvffffffbb	chr5:34925556-34925836(+)$1	280	121	148	21.6851
^^^^^^^^^^^^^^^^^^^^dddd]cc	chr10:121334989-121335249(-)$1	260	86	113	18.1206
eeeeewwwwwwwwwwwwwweeeee]cc	chr17:74730214-74730494(-)$1	280	92	119	22.7955
:eeeeevvvvvvvvvvvvveeeee:ee	chr17:61895006-61895232(+)$1	226	37	64	21.2696
"eeeeevvvvvvvvvvvvveeeee22f	chr3:128996359-128996580(+)$1	221	133	160	23.1927
iiiiiiiuuuuuuuuuuuuiiiiiiii	chr2:166801931-166802242(-)$1	311	235	262	22.1172
ee[ddddtttttttttttdddd]eeee	chr2:217069809-217070083(+)$1	274	78	105	20.4605
c"""ddddtttttttttttdddd22cc	chr5:134063285-134063549(+)$1	264	184	211	20.4219
ff[cccvvvvvvvvvvvvvccc]ffff	chr2:68405920-68406195(-)$1	275	108	135	23.4192
^^^^^^^^^^^^^^^^^^^^dddd]cc	chr1:27108257-27108473(+)$1	216	86	113	18.1206
d[eeeeeuuuuuuuuuuuueeeee]dd	chr15:50852512-50852743(-)$1	231	119	146	22.2242
deeeeeyyyyyyyyyyyyyyyyeeeee	chr15:72491598-72491860(-)$1	262	177	204	20.1161
eeeyyyyyyyyyyyyyyyyeeeee22c	chr12:69667809-69668081(+)$1	272	88	115	21.1305
iiiiiiiitttttttttttiiiiiiii	chr1:22005411-22005761(-)$1	350	173	200	19.7997
[fffffftttttttttttffffff333	chr6:32948857-32949126(+)$1	269	146	173	19.9442
======vvvvvvvvvvvvv========	chr9:97222870-97223116(+)$1	246	55	82	23.8982
fff[bbwwwwwwwwwwwwwwbbfffff	chr13:111545406-111545669(-)$1	263	153	180	20.9549
^^^^^^^^^^^^^^^^^^^========	chr5:10264872-10265117(+)$1	245	106	133	17.7617
eeee[bbuuuuuuuuuuuubb]eeeee	chr20:61920968-61921207(+)$1	239	125	152	21.3364
dddd[avvvvvvvvvvvvvadddd:::	chr5:134262608-134262876(+)$1	268	164	191	20.8665
gg[cccvvvvvvvvvvvvvccc]gggg	chr7:149171051-149171304(-)$1	253	89	116	23.9085
##ddddvvvvvvvvvvvvvdddd22a]	chr1:1270791-1271084(-)$1	293	75	102	23.5155
"""ddddtttttttttttdddd4444c	chr22:22890955-22891165(-)$1	210	78	105	21.0201
ddd[cccuuuuuuuuuuuuccc]dddd	chr22:20099219-20099444(+)$1	225	148	175	22.1279
eeebb[avvvvvvvvvvvvva]bb]ee	chr19:34890703-34890930(+)$1	227	32	59	21.5472
ggg!!bbuuuuuuuuuuuubb4444gg	chr2:153511796-153512030(-)$1	234	40	67	21.9853
c^^^^^^^^^^^^^^^^^^ccc4444e	chr11:62656159-62656390(+)$1	231	22	49	17.9548
hhhhhwwwwwwwwwwwwwwhhhhhhhh	chr11:9610912-9611206(+)$1	294	4	31	19.4847
bfffffftttttttttttffffff]bb	chr12:133160420-133160900(+)$1	480	162	189	19.0309
"""ddddtttttttttttdddd]gggg	chr22:22114649-22114911(-)$1	262	160	187	20.7279
dddccctttttttttttccc]ddddee	chr8:20078051-20078348(+)$1	297	10	37	19.9288

#otherMatches

#Seq PSSM
CACUGCUAUUGAUUUUAAUCUGUUUUU	chr3:152558511-152558772(+)$1	261	63	90	17.9788
GUGGAAUAAAAAACCUGUAUAUUUUAC	chr2:55199829-55200091(-)$1	262	62	89	19.7997
AGUCUGAUAAACGUUCACACAGUCUAA	chr16:238918-239196(-)$1	278	24	51	22.9282
ACAAAUUGUAAAGUAGAUAUUUGUAAU	chr12:116397225-116397482(-)$1	257	202	229	21.2146
UCCCAUUAACUUGAGUGACCUGUGUGA	chr16:28848182-28848477(+)$1	295	242	269	18.1261
CGUGUAAAAAUACUGUAGGACAGGCUA	chr4:17838677-17838917(+)$1	240	15	42	23.3938
UCAAUACUUCUGCCGCUUUGGAAAUUG	chr6:160176720-160177029(+)$1	309	105	132	17.9908
GCAAGGCUGUACCCUCAAUGCAGUUGA	chr11:9302395-9302686(-)$1	291	191	218	21.4922
GAAUUCUGUUAGAGUUUUUUAUUCUGU	chr3:152558572-152558819(+)$1	247	93	120	21.2213
GUUUUUGAAUUUGUGUGUGUGCUUGUG	chr8:23429775-23430017(+)$1	242	61	88	17.8609
AUUGUGUUAAUUAAAUCAUUACAUACU	chr3:43761029-43761270(+)$1	241	42	69	23.2308
UUUGACACUACAUUCCAAAGUCACCUG	chr15:40512663-40512916(+)$1	253	210	237	21.5452
aaaauuaaauuuuaaaaaaauucuauu	chr1:247350661-247350982(-)$1	321	270	297	18.0806
AGAGGAAAGUGAACAGUAAUCUUCAUU	chr18:211216-211508(+)$1	292	49	76	23.4716
CCCACCUUUUGAAGUUCGUGGUGCCAA	chrX:19377506-19377776(+)$1	270	207	234	23.9889
GGCCCCUUUCUCAGGCCGGAGGCCAAG	chr1:234742314-234742589(-)$1	275	129	156	19.7227
CUCUUAAAUGAAUGCAACUUUUGAUGU	chr12:22843070-22843334(+)$1	264	85	112	20.3917
UUUCCUUUCUUUAGCAUUUAGGUGACU	chr12:69667881-69668157(+)$1	276	130	157	23.0413
CUGUGCUUAUGGCUCUUGCGGAGGGUC	chr19:59060610-59060862(+)$1	252	151	178	20.7426
CUUCUUUUCCAUCCUAGUGAGAAGCUG	chr4:1981077-1981351(+)$1	274	124	151	19.8498
AGUGUGCCAUUCGACAACACAUUGUUA	chr8:26227914-26228156(+)$1	242	129	156	20.4391
UGUUAUUUUAAUAAUCCCUUUAAAUUU	chr18:9954312-9954593(+)$1	281	223	250	18.3916
GCAUGAUCAAAGGGGCCAUUUCUUGCU	chr12:56990009-56990261(-)$1	252	84	111	21.1434
CAGAUAAAUUGUUGCCUGCUUCUGUGU	chr3:10142855-10143091(+)$1	236	95	122	21.6911
CAGCCUGGGGGAGUGGGGAAGGCUUGG	chrX:153671437-153671682(+)$1	245	96	123	23.1688
ccauuaaagucagaaacuagccaaggg	chr15:91464057-91464313(+)$1	256	218	245	18.0914
AAUGGAUCUACCUAAUUUCUAUUGAUU	chr15:52839373-52839639(-)$1	266	184	211	18.7514
CCACUUCAUUUCUAUUUAUUGAACAGG	chr20:60757268-60757532(+)$1	264	106	133	20.4575
UUUUGUGAAUUGGGAUAAUAACAGCAG	chrX:152481577-152481821(-)$1	244	73	100	21.8909
UUUGCUCCUUACACCUUAAAAAGCUUU	chr5:180682122-180682401(-)$1	279	54	81	17.7617
AGUAAUGUUUGCCUAUAAAAUUGUCAG	chr3:160152416-160152774(+)$1	358	12	39	22.9571
AUUUAGGUUGCACAUUCACUGAAUUCA	chr2:183790122-183790393(-)$1	271	142	169	19.8498
UACUAAUUUUAAUUUUUAUUUGGAAGG	chr15:50852551-50852825(-)$1	274	111	138	23.6928
UGUUCUUAAAAUUAUUCUUGAAUGUAC	chr6:99847859-99848134(-)$1	275	229	256	22.3267
ACCAUGGAAGAUUGAGAGCCCAAGGUU	chr17:40463756-40464031(+)$1	275	67	94	22.1279
UCCCAUUAACUUGAGUGACCUGUGUGA	chr16:28848287-28848533(+)$1	246	137	164	18.1261
AUACUAUCUUACGUCUAAUUAGUGUAG	chr5:34925556-34925836(+)$1	280	121	148	21.6851
AAAAAAAUUGUAAUUCAUGAUAGGCUU	chr10:121334989-121335249(-)$1	260	86	113	18.1206
UUUUUUCCCUCUUCCCCCUAAAAAUGG	chr17:74730214-74730494(-)$1	280	92	119	22.7955
UCUCUUUCAGUCACAGUACAAGAGUCA	chr17:61895006-61895232(+)$1	226	37	64	21.2696
AUCUUGCUGUCCACCCUUCCAGGAAAG	chr3:128996359-128996580(+)$1	221	133	160	23.1927
AUAACAUUAAAAAAUGCUUAUGUUAUU	chr2:166801931-166802242(-)$1	311	235	262	22.1172
AAGUGUGUUGUUCUUGUUCACAGUUGG	chr2:217069809-217070083(+)$1	274	78	105	20.4605
GUUUGUAAUUUUCACUGUUUUAUUCCU	chr5:134063285-134063549(+)$1	264	184	211	20.4219
GUUGAAUGUUUAGUUUUUCUUCUGCAU	chr2:68405920-68406195(-)$1	275	108	135	23.4192
UUUUGUUUUGUUUUCUUUCUAAUCGAG	chr1:27108257-27108473(+)$1	216	86	113	18.1206
GAUAAGCUGUUUAAAUAGUGUUUAAUA	chr15:50852512-50852743(-)$1	231	119	146	22.2242
UGUCCAGUUCCUUUAGAAAAAAUGGAU	chr15:72491598-72491860(-)$1	262	177	204	20.1161
UUUUUUUUUUGCUGUCCAUGAGAAUUA	chr12:69667809-69668081(+)$1	272	88	115	21.1305
GGGGAAUAAAGUUCUGUUAUAUUUCCU	chr1:22005411-22005761(-)$1	350	173	200	19.7997
CUGGGGGUUUCAGUCAUCUCCCCAUUU	chr6:32948857-32949126(+)$1	269	146	173	19.9442
AGGUAUGAAAUAUAUGUAGAUAUUUGU	chr9:97222870-97223116(+)$1	246	55	82	23.8982
CAUCUGAACCAUUUCUAUAACAAUGGC	chr13:111545406-111545669(-)$1	263	153	180	20.9549
GUUACAUCCUUUUCCAGACACUGUAGA	chr5:10264872-10265117(+)$1	245	106	133	17.7617
GGAAGGCGCGGACCUGACAGCAUUCCA	chr20:61920968-61921207(+)$1	239	125	152	21.3364
GGCGACUAUGAGAAUGACUGCGCCGGU	chr5:134262608-134262876(+)$1	268	164	191	20.8665
uuguuuuuuUUUAAUUCUUGAGGAAAA	chr7:149171051-149171304(-)$1	253	89	116	23.9085
CAGUCUGAAAGUACGUGGAGGACGGGA	chr1:1270791-1271084(-)$1	293	75	102	23.5155
UAACUGCUUUGUCUAUUUGCAGGCACG	chr22:22890955-22891165(-)$1	210	78	105	21.0201
CUGAACACAUAAAGCAAACUGUCCAGA	chr22:20099219-20099444(+)$1	225	148	175	22.1279
CUCAGGGAUUUCAGUAGCAACGUUAGA	chr19:34890703-34890930(+)$1	227	32	59	21.5472
CUCUUGCUUUUUUUUCCCUGCUAUUGA	chr2:153511796-153512030(-)$1	234	40	67	21.9853
ACCCACUACCCUUCUCCUUUCCUUCCC	chr11:62656159-62656390(+)$1	231	22	49	17.9548
ACUGGUUUUGUAACUUGUUCUGGUAAU	chr11:9610912-9611206(+)$1	294	4	31	19.4847
CCUUUUCCCCCCACAGAUGAGAAGUGU	chr12:133160420-133160900(+)$1	480	162	189	19.0309
UUUCAUCUUAAUUCUUUUGAUGUUGUA	chr22:22114649-22114911(-)$1	262	160	187	20.7279
GUUGCAACGUUUUAAACUGCUAACAGA	chr8:20078051-20078348(+)$1	297	10	37	19.9288

#DB
((..................))))...	chr3:152558511-152558772(+)$1	1	63	90	17.9788
((((((((...........))))))))	chr2:55199829-55200091(-)$1	1	62	89	19.7997
((.(((.............))).))).	chr16:238918-239196(-)$1	1	24	51	22.9282
((((((............))))))...	chr12:116397225-116397482(-)$1	1	202	229	21.2146
((.(((...............))).))	chr16:28848182-28848477(+)$1	1	242	269	18.1261
(.(((..............))).)...	chr4:17838677-17838917(+)$1	1	15	42	23.3938
...................)))))...	chr6:160176720-160177029(+)$1	1	105	132	17.9908
((...((............)).)))))	chr11:9302395-9302686(-)$1	1	191	218	21.4922
((((................)))).))	chr3:152558572-152558819(+)$1	1	93	120	21.2213
((..................)))).))	chr8:23429775-23430017(+)$1	1	61	88	17.8609
((.(((.............))))))))	chr3:43761029-43761270(+)$1	1	42	69	23.2308
((((((.............))))....	chr15:40512663-40512916(+)$1	1	210	237	21.5452
(...................)))).))	chr1:247350661-247350982(-)$1	1	270	297	18.0806
((((((.............))))).))	chr18:211216-211508(+)$1	1	49	76	23.4716
..((((.............))))....	chrX:19377506-19377776(+)$1	1	207	234	23.9889
((((((...........)).)))).))	chr1:234742314-234742589(-)$1	1	129	156	19.7227
((((((((...........))))).).	chr12:22843070-22843334(+)$1	1	85	112	20.3917
...(((.............))).))).	chr12:69667881-69668157(+)$1	1	130	157	23.0413
((.(((...........))).)))...	chr19:59060610-59060862(+)$1	1	151	178	20.7426
((((((............)))))))..	chr4:1981077-1981351(+)$1	1	124	151	19.8498
((((((...........))))))))))	chr8:26227914-26228156(+)$1	1	129	156	20.4391
..(((...............)))..))	chr18:9954312-9954593(+)$1	1	223	250	18.3916
(((.((..............)).))))	chr12:56990009-56990261(-)$1	1	84	111	21.1434
((((................)))).))	chr3:10142855-10143091(+)$1	1	95	122	21.6911
((((((.............)))).)))	chrX:153671437-153671682(+)$1	1	96	123	23.1688
...................)))...))	chr15:91464057-91464313(+)$1	1	218	245	18.0914
((((((...........))))))..))	chr15:52839373-52839639(-)$1	1	184	211	18.7514
((..((((...........))))..))	chr20:60757268-60757532(+)$1	1	106	133	20.4575
((((((..............)))).))	chrX:152481577-152481821(-)$1	1	73	100	21.8909
...................))))))))	chr5:180682122-180682401(-)$1	1	54	81	17.7617
(.((((.............))))))))	chr3:160152416-160152774(+)$1	1	12	39	22.9571
((((((............)))))))..	chr2:183790122-183790393(-)$1	1	142	169	19.8498
..((((.............))))))))	chr15:50852551-50852825(-)$1	1	111	138	23.6928
(((((..............))))))))	chr6:99847859-99848134(-)$1	1	229	256	22.3267
(((.(((............))).))))	chr17:40463756-40464031(+)$1	1	67	94	22.1279
((.(((...............))).))	chr16:28848287-28848533(+)$1	1	137	164	18.1261
((((((.............))))))))	chr5:34925556-34925836(+)$1	1	121	148	21.6851
....................)))).))	chr10:121334989-121335249(-)$1	1	86	113	18.1206
(((((..............))))).))	chr17:74730214-74730494(-)$1	1	92	119	22.7955
.(((((.............))))).((	chr17:61895006-61895232(+)$1	1	37	64	21.2696
.(((((.............)))))..)	chr3:128996359-128996580(+)$1	1	133	160	23.1927
(((((((............))))))))	chr2:166801931-166802242(-)$1	1	235	262	22.1172
((.((((...........)))).))))	chr2:217069809-217070083(+)$1	1	78	105	20.4605
(...((((...........))))..))	chr5:134063285-134063549(+)$1	1	184	211	20.4219
((.(((.............))).))))	chr2:68405920-68406195(-)$1	1	108	135	23.4192
....................)))).))	chr1:27108257-27108473(+)$1	1	86	113	18.1206
(.(((((............))))).))	chr15:50852512-50852743(-)$1	1	119	146	22.2242
)(((((................)))))	chr15:72491598-72491860(-)$1	1	177	204	20.1161
(((................)))))..)	chr12:69667809-69668081(+)$1	1	88	115	21.1305
((((((((...........))))))))	chr1:22005411-22005761(-)$1	1	173	200	19.7997
.((((((...........))))))...	chr6:32948857-32949126(+)$1	1	146	173	19.9442
((((((.............))))))))	chr9:97222870-97223116(+)$1	1	55	82	23.8982
(((.((..............)))))))	chr13:111545406-111545669(-)$1	1	153	180	20.9549
...................))))))))	chr5:10264872-10265117(+)$1	1	106	133	17.7617
((((.((............)).)))))	chr20:61920968-61921207(+)$1	1	125	152	21.3364
((((.(.............)))))...	chr5:134262608-134262876(+)$1	1	164	191	20.8665
((.(((.............))).))))	chr7:149171051-149171304(-)$1	1	89	116	23.9085
..((((.............))))..).	chr1:1270791-1271084(-)$1	1	75	102	23.5155
...((((...........))))....)	chr22:22890955-22891165(-)$1	1	78	105	21.0201
(((.(((............))).))))	chr22:20099219-20099444(+)$1	1	148	175	22.1279
(((((.(.............).)).))	chr19:34890703-34890930(+)$1	1	32	59	21.5472
(((..((............))....))	chr2:153511796-153512030(-)$1	1	40	67	21.9853
(..................)))....)	chr11:62656159-62656390(+)$1	1	22	49	17.9548
(((((..............))))))))	chr11:9610912-9611206(+)$1	1	4	31	19.4847
(((((((...........)))))).))	chr12:133160420-133160900(+)$1	1	162	189	19.0309
...((((...........)))).))))	chr22:22114649-22114911(-)$1	1	160	187	20.7279
((((((...........))).))))((	chr8:20078051-20078348(+)$1	1	10	37	19.9288

#PSSM
d : 0.19	f : 0.13	e : 0.13	^ : 0.08	c : 0.07	g : 0.07	" : 0.05	i : 0.04	= : 0.04	! : 0.02	h : 0.02	# : 0.02	a : 0.01	: : 0.01	[ : 0.01	b : 0.01	
e : 0.17	f : 0.16	d : 0.13	^ : 0.11	g : 0.07	" : 0.05	i : 0.04	c : 0.04	[ : 0.04	= : 0.04	! : 0.02	h : 0.02	# : 0.02	
d : 0.20	^ : 0.14	e : 0.14	[ : 0.11	f : 0.10	" : 0.07	i : 0.04	g : 0.04	c : 0.02	= : 0.02	a : 0.01	! : 0.01	h : 0.01	
d : 0.20	c : 0.16	^ : 0.14	e : 0.13	f : 0.07	[ : 0.05	i : 0.04	" : 0.02	g : 0.02	= : 0.02	! : 0.02	y : 0.01	b : 0.01	h : 0.01	
c : 0.19	d : 0.17	^ : 0.14	e : 0.11	f : 0.07	b : 0.05	i : 0.04	y : 0.04	g : 0.02	= : 0.02	[ : 0.02	" : 0.01	! : 0.01	h : 0.01	
d : 0.17	c : 0.16	^ : 0.14	b : 0.08	e : 0.08	f : 0.07	w : 0.05	i : 0.04	y : 0.04	g : 0.02	= : 0.02	x : 0.01	a : 0.01	[ : 0.01	
v : 0.25	^ : 0.14	w : 0.10	t : 0.07	d : 0.07	y : 0.05	i : 0.04	u : 0.04	x : 0.04	b : 0.04	e : 0.02	c : 0.02	f : 0.02	a : 0.01	
v : 0.26	^ : 0.14	u : 0.14	t : 0.14	w : 0.10	y : 0.05	x : 0.04	i : 0.02	d : 0.02	e : 0.01	
v : 0.26	t : 0.22	^ : 0.14	u : 0.14	w : 0.10	y : 0.05	x : 0.04	
v : 0.26	t : 0.22	^ : 0.14	u : 0.14	w : 0.10	y : 0.05	x : 0.04	
v : 0.26	t : 0.22	^ : 0.14	u : 0.14	w : 0.10	y : 0.05	x : 0.04	
v : 0.26	t : 0.22	^ : 0.14	u : 0.14	w : 0.10	y : 0.05	x : 0.04	
v : 0.26	t : 0.22	^ : 0.14	u : 0.14	w : 0.10	y : 0.05	x : 0.04	
v : 0.26	t : 0.22	^ : 0.14	u : 0.14	w : 0.10	y : 0.05	x : 0.04	
v : 0.26	t : 0.22	^ : 0.14	u : 0.14	w : 0.10	y : 0.05	x : 0.04	
v : 0.26	t : 0.22	^ : 0.14	u : 0.14	w : 0.10	y : 0.05	x : 0.04	
v : 0.26	t : 0.22	^ : 0.14	u : 0.14	w : 0.10	y : 0.05	x : 0.04	
v : 0.26	^ : 0.14	t : 0.14	u : 0.14	w : 0.10	y : 0.05	x : 0.04	c : 0.02	b : 0.01	= : 0.01	f : 0.01	
v : 0.26	^ : 0.14	w : 0.10	u : 0.10	t : 0.07	f : 0.05	y : 0.05	x : 0.04	d : 0.04	c : 0.02	g : 0.02	b : 0.01	= : 0.01	
c : 0.17	d : 0.16	e : 0.13	^ : 0.07	f : 0.07	= : 0.05	i : 0.04	x : 0.04	b : 0.04	y : 0.04	w : 0.04	g : 0.02	] : 0.01	a : 0.01	v : 0.01	h : 0.01	
d : 0.31	c : 0.16	e : 0.13	f : 0.07	b : 0.07	= : 0.05	i : 0.04	x : 0.02	] : 0.02	g : 0.02	y : 0.01	a : 0.01	h : 0.01	
d : 0.32	c : 0.20	e : 0.13	f : 0.07	= : 0.05	i : 0.04	] : 0.04	g : 0.02	b : 0.02	y : 0.01	4 : 0.01	h : 0.01	
d : 0.28	e : 0.17	] : 0.14	f : 0.10	c : 0.05	= : 0.05	i : 0.04	4 : 0.04	g : 0.02	3 : 0.01	b : 0.01	h : 0.01	
d : 0.20	e : 0.19	f : 0.11	c : 0.07	= : 0.07	2 : 0.07	4 : 0.05	g : 0.05	i : 0.04	a : 0.01	7 : 0.01	] : 0.01	3 : 0.01	b : 0.01	h : 0.01	
] : 0.23	4 : 0.10	2 : 0.10	e : 0.07	f : 0.07	= : 0.07	3 : 0.05	g : 0.05	d : 0.05	i : 0.04	c : 0.04	: : 0.02	7 : 0.01	h : 0.01	
e : 0.16	c : 0.14	f : 0.10	4 : 0.08	g : 0.07	= : 0.07	d : 0.05	i : 0.04	3 : 0.04	b : 0.04	: : 0.04	a : 0.02	h : 0.02	2 : 0.02	7 : 0.01	
e : 0.17	c : 0.14	f : 0.11	: : 0.07	g : 0.07	= : 0.07	4 : 0.05	d : 0.05	i : 0.04	3 : 0.04	b : 0.04	] : 0.02	h : 0.02	7 : 0.01	

#score	1397.809007359864
#seq	67
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456PLF_NCBP2_UTR_m2_run2.txt

#BEAR
gdddd[ddddbb!!cccpppppppcccbb]dddd22dddd	chr8:42396494-42396719(-)$1	225	123	163	14.9032
cc!!gggggggcccrrrrrrrrrccc]ggggggg]ccc44	chr8:23104054-23104354(+)$1	300	19	59	16.1758
eeecccccc[eeeee[apppppppa]eeeeeccc]ccc]e	chrX:153686522-153686859(+)$1	337	189	229	18.2701
b[bb!!ffffff[cccrrrrrrrrrcccffffff]bbbb2	chr1:31538385-31538655(-)$1	270	142	182	14.9485
:ccc[ccc[ffffffrrrrrrrrrffffff]ccc22cccd	chr20:44718325-44718577(-)$1	252	162	202	15.0948
e[ccc!!eeeee[acccpppppppccc]a]eeeee4444c	chr7:916095-916398(+)$1	303	170	210	17.7114
ccc[dddd[dddd[a[arrrrrrrrra]a]dddd]dddd]	chr17:8533871-8534146(-)$1	275	21	61	15.2150
eee!!dddd[gggggggrrrrrrrrrggggggg22dddd]	chr13:100741257-100741581(+)$1	324	11	51	16.6798
eee"""ggggggg[bbrrrrrrrrrbbggggggg]eeeee	chr1:6662758-6663029(-)$1	271	189	229	17.1777
ccc"""ccc!!ffffffrrrrrrrrrffffff333ccc]c	chr4:39699739-39699967(+)$1	228	98	138	17.6620
a[a!!ccc!!ccc[ddddpppppppdddd22ccc]ccc22	chr6:24775079-24775369(+)$1	290	114	154	16.6859
gg!!ccc[ccc[a[cccpppppppccc]a]ccc]ccc22g	chr6:30584618-30584876(-)$1	258	30	70	18.7099
e[iiiiiiiii[ccc[apppppppa]ccciiiiiiiiiee	chr5:126365970-126366345(-)$1	375	315	355	19.4684
eee[dddd!!gggggggrrrrrrrrrgggggggddddeee	chr12:104324161-104324401(+)$1	240	165	205	16.0441
++ccc"""bb[a!!cccpppppppccc22a]bb22ccc>>	chr17:43225832-43226099(+)$1	267	116	156	16.1909
##a!!a[eeeee!!a[arrrrrrrrra]a]eeeee]a22a	chr7:100136838-100137097(+)$1	259	173	213	16.3645
fff!!===========rrrrrrrrr===========8888	chr19:12035817-12036078(+)$1	261	22	62	17.7467
eeeee==========rrrrrrrrr==========22eeee	chr6:30584894-30585120(-)$1	226	120	160	17.5283
cc:==========[cccpppppppccc==========FFF	chr5:132299146-132299423(-)$1	277	229	269	17.7497
ccc!!bb[dddd[a[bbpppppppbb22a]dddd]bbccc	chr16:67217679-67217961(-)$1	282	122	162	15.0625
eeeee[a[a[gggggggqqqqqqqqgggggggaa]eeeee	chr11:67980535-67980805(-)$1	270	160	200	13.2339
cc[ccc[cccdddd[aqqqqqqqqa]dddd]ccc22ccc]	chr16:21610814-21611078(+)$1	264	220	260	12.0614
eeee[ccc!!ccc[bbrrrrrrrrrbb]ccc22ccceeee	chr16:577710-578022(+)$1	312	209	249	16.2183
[bb[=============qqqqqqqq=============]b	chrX:153744279-153744648(-)$1	369	47	87	15.3064
eee!!ccc!!gggggggpppppppggggggg22ccc5555	chr11:64879244-64879536(+)$1	292	122	162	16.3059
eeebb[ccc"""eeeeepppppppeeeee666666ccc22	chr18:76829295-76829614(+)$1	319	198	238	14.6520
b####ccc####ddddrrrrrrrrrdddd4444ccc4444	chr17:55333787-55334042(+)$1	255	205	245	17.0532
cggggggg!!ccc[cccpppppppcccccc]ggggggg]c	chr20:5931213-5931621(+)$1	408	297	337	19.0422
[dddd!!ccc[ffffffpppppppffffffccc22dddde	chr12:95867829-95868115(+)$1	286	67	107	16.3237
===[ffffff[ffffffpppppppffffff]ffffff]==	chr4:164415731-164416010(+)$1	279	135	175	16.3246
!!cccggggggg!!cccpppppppccc22ggggggg333c	chr11:14521143-14521375(-)$1	232	145	185	19.2282
"bb!!ccc[ccc!!cccssssssssssccc]ccc]ccc22	chr2:162016838-162017098(+)$1	260	193	233	13.2352
=============[bbapppppppa]bb]===========	chr19:17581203-17581569(+)$1	366	169	209	19.6554
dd"""ccc"""ffffffpppppppffffff333ccc333d	chr16:30709499-30709764(+)$1	265	189	229	18.7008
dd[ffffffgggggggrrrrrrrrrggggggg]ffffffd	chr8:124780607-124780961(+)$1	354	180	220	15.6669
iiii[a!!a!!ddddrrrrrrrrrdddd22a22a]iiiii	chr20:43029848-43030079(+)$1	231	38	78	16.3988
iiiiiiiccc!!ccc[aqqqqqqqqaccc]ccc]iiiiii	chr12:110011134-110011413(-)$1	279	216	256	14.2438
bb[dddd[bb[ffffffpppppppffffff]bb333dddd	chr4:2794658-2794974(+)$1	316	27	67	15.3034
iiiiiiiii[eeeeerrrrrrrrreeeee333iiiiiiii	chr17:46048538-46048801(+)$1	263	6	46	17.1378
!!ccc[bb[gggggggrrrrrrrrrggggggg]bbccc]e	chr17:7476465-7476696(+)$1	231	78	118	16.9911
ddd!!eeeee"""ddddpppppppdddd4444eeeee]dd	chr3:27525678-27525958(-)$1	280	142	182	15.6717
eeee!!ccc!!addddqqqqqqqqdddd333a22ccc444	chr17:75084793-75085045(+)$1	252	152	192	13.5001
:a[ccc!!hhhhhhhhrrrrrrrrrhhhhhhhh22ccc]a	chr20:8112768-8113029(+)$1	261	194	234	14.1161
c[ggggggg$$$$$cccqqqqqqqqccc]gggggggccc]	chr11:93474453-93474704(-)$1	251	133	173	13.3070
d[bb!!iiiiiiiiibbpppppppbb333iiiiiiiiibb	chr20:524206-524474(-)$1	268	27	67	17.6349
e::ccc!!iiiiiiiiipppppppiiiiiiiii333ccc:	chr6:154831644-154831887(-)$1	243	97	137	16.6364
:==========[eeeeepppppppeeeee]==========	chr6:7590358-7590658(+)$1	300	90	130	18.4123
f[ccc$$$$$ccc[cccpppppppccc333ccccccffff	chr8:38034051-38034319(-)$1	268	30	70	17.1229
eeee[bb"""eeeee[apppppppa]eeeee4444bb]ee	chr21:45284974-45285269(+)$1	295	22	62	16.9629
[bba[dddd!!eeeeerrrrrrrrreeeee22dddd]a66	chr4:78078326-78078626(+)$1	300	23	63	14.6361
[bb[bb[iiiiiiiiirrrrrrrrriiiiiiiii22bb]b	chr17:73892752-73893138(-)$1	386	187	227	16.8693
cc[===========[bbpppppppbb]===========22	chr15:50978814-50979100(-)$1	286	189	229	19.1736
eee[a[ccc[a!!eeeeeqqqqqqqqeeeee22a]ccc]a	chr16:66785286-66785608(-)$1	322	93	133	12.3676
$$ggggggg####a!!apppppppa22a22ggggggg555	chr15:79165206-79165450(+)$1	244	112	152	15.9421
ddd!!ggggggg[ddddpppppppddddggggggg22ddd	chrX:17755570-17755832(+)$1	262	202	242	16.9583
iiiiiiia"""eeeeerrrrrrrrreeeee333a]iiiii	chr14:90798084-90798431(-)$1	347	27	67	17.8864
dbb[ggggggg[eeeeeqqqqqqqqeeeee]ggggggg]b	chr17:58469250-58469516(-)$1	266	158	198	12.8196
!!ffffff!!a!!bb[apppppppa]bb22a22ffffff2	chr11:93474435-93474653(-)$1	218	39	79	16.1637
eeee!!a[ffffffcccpppppppccc]ffffffaeeeee	chr17:74722444-74722779(-)$1	335	181	221	16.6316
eebb[eeeee!!ccc[apppppppa]ccc22eeeee]bb4	chr20:3801103-3801396(+)$1	293	241	281	16.4259

#otherMatches

#Seq PSSM
GCGUGAGUGGAGCCGGGCUCCUUUCCCCUAccgcgccgcg	chr8:42396494-42396719(-)$1	225	123	163	14.9032
UUAUUUCACGCUCAGGGCGGCGGUGACGUGUGAACGAGAA	chr8:23104054-23104354(+)$1	300	19	59	16.1758
cucgggggcgCGUCCACGUGGCCAGAGGGCGGCCACCCGG	chrX:153686522-153686859(+)$1	337	189	229	18.2701
GAGAGAGAAGAUCGGGGGGCUGAAAUCCAUCUUCAUCCUA	chr1:31538385-31538655(-)$1	270	142	182	14.9485
GCUGACGGGCAGGCCGUUGUGGGGGGCCUGGCCGGACGGG	chr20:44718325-44718577(-)$1	252	162	202	15.0948
cgcggagcgccggcccgauggcggcggcggcggcgauggc	chr7:916095-916398(+)$1	303	170	210	17.7114
UGGAGCUGGCCCAAUGAGGGUAGGGGUGGGUGGGGCAGCC	chr17:8533871-8534146(-)$1	275	21	61	15.2150
GGCAUCGGGUUUCUGGCUCGUGAUUUGCCGGAGCUCCUGC	chr13:100741257-100741581(+)$1	324	11	51	16.6798
CGGACCCCGCGCACGCCCUGAGCCUGCUGCGCGGCCUGAG	chr1:6662758-6663029(-)$1	271	189	229	17.1777
CUCAGGUCUGAAUCGCCGAGggaggaggcgguggaggaag	chr4:39699739-39699967(+)$1	228	98	138	17.6620
GGCGAGCGGAGUUAGCAGGGCUUUACUGCAGAGCGCGCCG	chr6:24775079-24775369(+)$1	290	114	154	16.6859
UGGCAUUUGUGAGUGUUUUGAAGCAACCCGUACUGAUUAC	chr6:30584618-30584876(-)$1	258	30	70	18.7099
CGCGCCGGGCUAGCGGCUCCUCUCGGCGCGGUUCGGCGGC	chr5:126365970-126366345(-)$1	375	315	355	19.4684
GUCCUGCUGACCUUCGGUGAGUGAUUCUGGAGGAGCAGAC	chr12:104324161-104324401(+)$1	240	165	205	16.0441
gaggcggaggagaaCUGAGCAGAGCAGAGCAUCGAGCCAA	chr17:43225832-43226099(+)$1	267	116	156	16.1909
gucagcgggggcaaggcggaggcggaggcggccucggagg	chr7:100136838-100137097(+)$1	259	173	213	16.3645
CGGGACCUAGUAUUUCAUCCAAUCAGAGGUGCUGGGGCGU	chr19:12035817-12036078(+)$1	261	22	62	17.7467
GUAAGUUUGCCUACUUUGUCGUCUAGUGGGUAAAAUUUUG	chr6:30584894-30585120(-)$1	226	120	160	17.5283
CGUCAUGGAGCGGUGCGGGGCCUACGCCUGUUCCGUGUGA	chr5:132299146-132299423(-)$1	277	229	269	17.7497
GCUGGGCGUCCGGUGGCCGGUGUAGCAGAGCGGGAGCGGC	chr16:67217679-67217961(-)$1	282	122	162	15.0625
GCCUGGGACGCGCCCCGAGGAGGAGCGGGGCGGCGCAGGC	chr11:67980535-67980805(-)$1	270	160	200	13.2339
GCGAGCGGCCGCGGCCCCCGAUGAGACUGCUGGCGGGCUG	chr16:21610814-21611078(+)$1	264	220	260	12.0614
GCUCUCCGGAGGCAGAAGUUGUGGAUcggccggcgggggc	chr16:577710-578022(+)$1	312	209	249	16.2183
UgccgggggcggggccggcgggcUGUGGCCCCGCCCUUAG	chrX:153744279-153744648(-)$1	369	47	87	15.3064
GUGCAGGCGCCGCGGGGCCGGAUCCUCCGCGCGGCCGAGU	chr11:64879244-64879536(+)$1	292	122	162	16.3059
CGCGGGGCCCAGGCCGGGAGCCGACCGGCACAGCAGGUAA	chr18:76829295-76829614(+)$1	319	198	238	14.6520
gaggagggggaggagggagcggagAUCUCGGGGCUCGGAG	chr17:55333787-55334042(+)$1	255	205	245	17.0532
CAGGAGUCGCCUGAGGAGCUAAGAUCCCGGAGACUCUUAG	chr20:5931213-5931621(+)$1	408	297	337	19.0422
UGGAGAAGGAUCGGGGCCCUCGCCGCUCUGUCUCAUUCCC	chr12:95867829-95868115(+)$1	286	67	107	16.3237
GUGCUCUUGUGAGCUGCUGCUCCUGCGGUUGGUGAGAUUA	chr4:164415731-164416010(+)$1	279	135	175	16.3246
AACUGGCUUUCUAgcuggaagaugcggaaggggagcgacu	chr11:14521143-14521375(-)$1	232	145	185	19.2282
AUCCGUCAAGCACGACGUCGGAGAAUUUGUAUGCGUGAGC	chr2:162016838-162017098(+)$1	260	193	233	13.2352
GGCCUCGGUGGUCUCGCUGGCGCUGUUGUGGCUGCUGGGG	chr19:17581203-17581569(+)$1	366	169	209	19.6554
GGGAGUUUAAAGGCCGCGAAGGCGGUGGCCAAGAGGGGGC	chr16:30709499-30709764(+)$1	265	189	229	18.7008
UGUCGGGAGCCUAGGCCAUGGGGCAGCCUGGGCCUUCUGC	chr8:124780607-124780961(+)$1	354	180	220	15.6669
CCAGAGGACGGUUUGAAAGGAAGGCAGAGAGGGCACUGGG	chr20:43029848-43030079(+)$1	231	38	78	16.3988
CCCGUUUCCAGAGCCGCGGCCCUCAGGGCGUGGAAGACGG	chr12:110011134-110011413(-)$1	279	216	256	14.2438
GGAUUgcgggacccgccggggaggggcggggccggggcgg	chr4:2794658-2794974(+)$1	316	27	67	15.3034
GGGGACUGGCCGCGGACCCCUAACCUGUGUCUCCGGUCUC	chr17:46048538-46048801(+)$1	263	6	46	17.1378
UUGCCUCCCUGUGCCGGGGGAGGGACGGCGCGCGGGGUUC	chr17:7476465-7476696(+)$1	231	78	118	16.9911
UCGCAGCGCGCACACGCACGCCCCGCGUCUCCCGCGCCCG	chr3:27525678-27525958(-)$1	280	142	182	15.6717
GAGGCACUGACCGGGUGACCAGAGACCCAGAGACCAGACC	chr17:75084793-75085045(+)$1	252	152	192	13.5001
AGGCGGCGGCGGCGGAGGAGCAGAAUCCGCCGCGACUGGC	chr20:8112768-8113029(+)$1	261	194	234	14.1161
CACCAGGCCAGUCGCGGGUUUUGGGCCGAGGCCUGGGUUA	chr11:93474453-93474704(-)$1	251	133	173	13.3070
CAGCAGCGGCUGCAGCCUCGCUCUGGUCCCUGCGGCUGGC	chr20:524206-524474(-)$1	268	27	67	17.6349
UUUGCAACCCGAGCGCGCACGCUCUGCGCUCGGCCCUGCC	chr6:154831644-154831887(-)$1	243	97	137	16.6364
UCUGCAGUUCGGCCGCUUCCUCUUGGCGGGUGGGCUGCAG	chr6:7590358-7590658(+)$1	300	90	130	18.4123
GUCGGACGACGCCAGCCAAUCCCAGGCCCGGGCCCGCCCC	chr8:38034051-38034319(-)$1	268	30	70	17.1229
gccggcggAACUGUGGGAUCGCCGCGCACAggaaguggcg	chr21:45284974-45285269(+)$1	295	22	62	16.9629
GGGCGUCGAAACUCUUAACAAAAACAAGGGGCUCGGGGAG	chr4:78078326-78078626(+)$1	300	23	63	14.6361
UGACGCUGCCCUGCGGCCACAACUUCUGCGGGGCCUGCAU	chr17:73892752-73893138(-)$1	386	187	227	16.8693
AAAGACUCGGCUUCUGCUGCUAGCGCCGGAGCUGAGUUAG	chr15:50978814-50979100(-)$1	286	189	229	19.1736
UUUGUGGCUGCAGUUGGCAAGAUGGCGCCGGUGGGGGUGG	chr16:66785286-66785608(-)$1	322	93	133	12.3676
GGGGGUGGUGGGAGAAGGAGGAGGCGGCGAAUCACUUAUA	chr15:79165206-79165450(+)$1	244	112	152	15.9421
GGCGUGACAGGCUCUGUCACUAAAAUAGGUCUGUCCAGUC	chrX:17755570-17755832(+)$1	262	202	242	16.9583
CUCUGGGCCCCGCCCCUCCCGCUUCGGGGUCAAGCCCCAG	chr14:90798084-90798431(-)$1	347	27	67	17.8864
GGGAGGGGGGUGGGGGCGAGAUCAGGCUCCGACCCCCCGC	chr17:58469250-58469516(-)$1	266	158	198	12.8196
GGAGGGCUGAGGUCGGGAGGGUGGUGUGUACAGAGCUCUA	chr11:93474435-93474653(-)$1	218	39	79	16.1637
UGCGCCGAGGUCGUAGCGGAACCAGCUGGCGACCCCGCAG	chr17:74722444-74722779(-)$1	335	181	221	16.6316
CCGGAGUAAGAAACUACAACCCCCGAAGUGCCUUGCGCCU	chr20:3801103-3801396(+)$1	293	241	281	16.4259

#DB
(((((.((((((..(((.......))))).))))..))))	chr8:42396494-42396719(-)$1	1	123	163	14.9032
((..((((((((((.........))).))))))).)))..	chr8:23104054-23104354(+)$1	1	19	59	16.1758
(((((((((.(((((.(.......).)))))))).))).)	chrX:153686522-153686859(+)$1	1	189	229	18.2701
(.((..((((((.(((.........))))))))).)))).	chr1:31538385-31538655(-)$1	1	142	182	14.9485
.(((.(((.((((((.........)))))).)))..)))(	chr20:44718325-44718577(-)$1	1	162	202	15.0948
(.(((..(((((.((((.......))).).)))))....)	chr7:916095-916398(+)$1	1	170	210	17.7114
(((.((((.((((.(.(.........).).)))).)))).	chr17:8533871-8534146(-)$1	1	21	61	15.2150
(((..((((.(((((((.........)))))))..)))).	chr13:100741257-100741581(+)$1	1	11	51	16.6798
(((...(((((((.((.........))))))))).)))))	chr1:6662758-6663029(-)$1	1	189	229	17.1777
(((...(((..((((((.........))))))...))).)	chr4:39699739-39699967(+)$1	1	98	138	17.6620
(.(..(((..(((.((((.......))))..))).)))..	chr6:24775079-24775369(+)$1	1	114	154	16.6859
((..(((.(((.(.(((.......))).).))).)))..)	chr6:30584618-30584876(-)$1	1	30	70	18.7099
(.(((((((((.(((.(.......).))))))))))))))	chr5:126365970-126366345(-)$1	1	315	355	19.4684
(((.((((..(((((((.........))))))))))))))	chr12:104324161-104324401(+)$1	1	165	205	16.0441
..(((...((.(..(((.......)))..).))..)))..	chr17:43225832-43226099(+)$1	1	116	156	16.1909
..(..(.(((((..(.(.........).).))))).)..)	chr7:100136838-100137097(+)$1	1	173	213	16.3645
(((..(((((((((((.........)))))))))))....	chr19:12035817-12036078(+)$1	1	22	62	17.7467
(((((((((((((((.........))))))))))..))))	chr6:30584894-30585120(-)$1	1	120	160	17.5283
)).((((((((((.(((.......))))))))))))))))	chr5:132299146-132299423(-)$1	1	229	269	17.7497
(((..((.((((.(.((.......))..).)))).)))))	chr16:67217679-67217961(-)$1	1	122	162	15.0625
(((((.(.(.(((((((........))))))))).)))))	chr11:67980535-67980805(-)$1	1	160	200	13.2339
((.(((.(((((((.(........).)))).)))..))).	chr16:21610814-21611078(+)$1	1	220	260	12.0614
((((.(((..(((.((.........)).)))..)))))))	chr16:577710-578022(+)$1	1	209	249	16.2183
.((.(((((((((((((........))))))))))))).)	chrX:153744279-153744648(-)$1	1	47	87	15.3064
(((..(((..(((((((.......)))))))..)))....	chr11:64879244-64879536(+)$1	1	122	162	16.3059
(((((.(((...(((((.......)))))......)))..	chr18:76829295-76829614(+)$1	1	198	238	14.6520
(....(((....((((.........))))....)))....	chr17:55333787-55334042(+)$1	1	205	245	17.0532
((((((((..(((.(((.......)))))).))))))).)	chr20:5931213-5931621(+)$1	1	297	337	19.0422
.((((..(((.((((((.......)))))))))..)))))	chr12:95867829-95868115(+)$1	1	67	107	16.3237
(((.((((((.((((((.......)))))).)))))).))	chr4:164415731-164416010(+)$1	1	135	175	16.3246
..((((((((((..(((.......)))..)))))))...)	chr11:14521143-14521375(-)$1	1	145	185	19.2282
.((..(((.(((..(((..........))).))).)))..	chr2:162016838-162017098(+)$1	1	193	233	13.2352
(((((((((((((.(((.......).)).)))))))))))	chr19:17581203-17581569(+)$1	1	169	209	19.6554
((...(((...((((((.......))))))...)))...)	chr16:30709499-30709764(+)$1	1	189	229	18.7008
((.(((((((((((((.........))))))).)))))))	chr8:124780607-124780961(+)$1	1	180	220	15.6669
((((.(..(..((((.........))))..)..).)))))	chr20:43029848-43030079(+)$1	1	38	78	16.3988
((((((((((..(((.(........)))).))).))))))	chr12:110011134-110011413(-)$1	1	216	256	14.2438
((.((((.((.((((((.......)))))).))...))))	chr4:2794658-2794974(+)$1	1	27	67	15.3034
(((((((((.(((((.........)))))...))))))))	chr17:46048538-46048801(+)$1	1	6	46	17.1378
..(((.((.(((((((.........))))))).))))).)	chr17:7476465-7476696(+)$1	1	78	118	16.9911
(((..(((((...((((.......))))....))))).))	chr3:27525678-27525958(-)$1	1	142	182	15.6717
((((..(((..(((((........))))...)..)))...	chr17:75084793-75085045(+)$1	1	152	192	13.5001
.(.(((..((((((((.........))))))))..))).)	chr20:8112768-8113029(+)$1	1	194	234	14.1161
(.(((((((.....(((........))).)))))))))).	chr11:93474453-93474704(-)$1	1	133	173	13.3070
(.((..(((((((((((.......))...)))))))))))	chr20:524206-524474(-)$1	1	27	67	17.6349
)..(((..(((((((((.......)))))))))...))).	chr6:154831644-154831887(-)$1	1	97	137	16.6364
.((((((((((.(((((.......))))).))))))))))	chr6:7590358-7590658(+)$1	1	90	130	18.4123
(.(((.....(((.(((.......)))...))))))))))	chr8:38034051-38034319(-)$1	1	30	70	17.1229
((((.((...(((((.(.......).)))))....)).))	chr21:45284974-45285269(+)$1	1	22	62	16.9629
.(((.((((..(((((.........)))))..)))).)..	chr4:78078326-78078626(+)$1	1	23	63	14.6361
.((.((.(((((((((.........)))))))))..)).)	chr17:73892752-73893138(-)$1	1	187	227	16.8693
((.(((((((((((.((.......)).)))))))))))..	chr15:50978814-50979100(-)$1	1	189	229	19.1736
(((.(.(((.(..(((((........)))))..).))).)	chr16:66785286-66785608(-)$1	1	93	133	12.3676
..(((((((....(..(.......)..)..)))))))...	chr15:79165206-79165450(+)$1	1	112	152	15.9421
(((..(((((((.((((.......)))))))))))..)))	chrX:17755570-17755832(+)$1	1	202	242	16.9583
((((((((...(((((.........)))))...).)))))	chr14:90798084-90798431(-)$1	1	27	67	17.8864
)((.(((((((.(((((........))))).))))))).)	chr17:58469250-58469516(-)$1	1	158	198	12.8196
..((((((..(..((.(.......).))..)..)))))).	chr11:93474435-93474653(-)$1	1	39	79	16.1637
((((..(.(((((((((.......))).))))))))))))	chr17:74722444-74722779(-)$1	1	181	221	16.6316
((((.(((((..(((.(.......).)))..))))).)).	chr20:3801103-3801396(+)$1	1	241	281	16.4259

#PSSM
e : 0.28	c : 0.15	d : 0.09	[ : 0.06	i : 0.06	b : 0.05	: : 0.05	! : 0.05	g : 0.03	f : 0.03	= : 0.03	a : 0.01	+ : 0.01	# : 0.01	" : 0.01	$ : 0.01	
e : 0.23	c : 0.13	[ : 0.11	d : 0.09	b : 0.09	i : 0.06	= : 0.05	! : 0.05	g : 0.03	# : 0.03	+ : 0.01	f : 0.01	a : 0.01	: : 0.01	$ : 0.01	
e : 0.21	c : 0.15	b : 0.13	i : 0.08	[ : 0.08	d : 0.06	g : 0.05	= : 0.05	! : 0.03	a : 0.03	f : 0.03	: : 0.03	# : 0.01	" : 0.01	
! : 0.18	c : 0.16	[ : 0.11	e : 0.09	i : 0.08	b : 0.06	= : 0.06	d : 0.05	" : 0.05	g : 0.05	f : 0.03	# : 0.01	a : 0.01	
! : 0.21	c : 0.16	[ : 0.09	d : 0.08	g : 0.08	= : 0.08	i : 0.06	" : 0.05	f : 0.05	e : 0.03	b : 0.03	# : 0.01	a : 0.01	
c : 0.19	g : 0.11	= : 0.11	! : 0.09	[ : 0.08	d : 0.08	i : 0.06	" : 0.05	b : 0.05	f : 0.05	a : 0.03	e : 0.03	$ : 0.01	
c : 0.21	g : 0.13	= : 0.11	d : 0.09	! : 0.08	i : 0.08	f : 0.06	[ : 0.05	b : 0.05	a : 0.03	e : 0.03	" : 0.01	$ : 0.01	
c : 0.24	g : 0.13	= : 0.11	d : 0.08	[ : 0.08	f : 0.06	e : 0.06	i : 0.06	! : 0.05	" : 0.03	b : 0.01	$ : 0.01	a : 0.01	
c : 0.15	g : 0.11	= : 0.11	! : 0.09	i : 0.08	d : 0.06	f : 0.06	[ : 0.06	e : 0.06	" : 0.05	b : 0.03	a : 0.03	# : 0.01	h : 0.01	$ : 0.01	
! : 0.16	g : 0.11	= : 0.11	[ : 0.08	c : 0.08	f : 0.06	e : 0.06	i : 0.06	" : 0.06	d : 0.05	b : 0.03	# : 0.03	$ : 0.03	h : 0.01	
g : 0.18	= : 0.11	! : 0.09	c : 0.09	e : 0.08	i : 0.06	[ : 0.06	" : 0.06	f : 0.05	d : 0.05	# : 0.03	a : 0.03	b : 0.01	h : 0.01	$ : 0.01	
g : 0.15	f : 0.13	e : 0.11	c : 0.09	= : 0.09	d : 0.06	[ : 0.06	! : 0.06	i : 0.05	a : 0.03	" : 0.03	# : 0.03	b : 0.01	h : 0.01	$ : 0.01	
c : 0.13	e : 0.13	! : 0.11	f : 0.11	g : 0.11	= : 0.09	d : 0.08	[ : 0.06	i : 0.05	a : 0.01	" : 0.01	h : 0.01	$ : 0.01	# : 0.01	
e : 0.15	[ : 0.15	f : 0.11	g : 0.09	d : 0.09	! : 0.08	c : 0.08	= : 0.06	a : 0.05	i : 0.05	h : 0.01	$ : 0.01	b : 0.01	
c : 0.24	e : 0.15	f : 0.09	g : 0.09	d : 0.09	b : 0.06	= : 0.05	[ : 0.05	i : 0.05	a : 0.03	r : 0.01	h : 0.01	! : 0.01	
c : 0.19	[ : 0.13	g : 0.09	b : 0.09	e : 0.09	r : 0.08	f : 0.08	d : 0.08	= : 0.03	i : 0.03	a : 0.01	h : 0.01	! : 0.01	
r : 0.26	c : 0.18	a : 0.16	f : 0.08	g : 0.06	e : 0.06	d : 0.05	b : 0.05	q : 0.03	= : 0.01	i : 0.01	
p : 0.48	r : 0.35	q : 0.11	d : 0.01	s : 0.01	e : 0.01	
p : 0.49	r : 0.35	q : 0.13	s : 0.01	
p : 0.49	r : 0.35	q : 0.13	s : 0.01	
p : 0.49	r : 0.35	q : 0.13	s : 0.01	
p : 0.49	r : 0.35	q : 0.13	s : 0.01	
p : 0.49	r : 0.35	q : 0.13	s : 0.01	
p : 0.49	r : 0.33	q : 0.13	c : 0.01	s : 0.01	
r : 0.26	c : 0.16	a : 0.13	q : 0.09	f : 0.08	d : 0.06	b : 0.05	e : 0.05	p : 0.01	= : 0.01	g : 0.01	s : 0.01	i : 0.01	
c : 0.19	] : 0.11	d : 0.09	e : 0.09	f : 0.08	r : 0.08	b : 0.08	g : 0.06	= : 0.05	i : 0.03	s : 0.01	a : 0.01	h : 0.01	q : 0.01	2 : 0.01	
c : 0.23	e : 0.15	d : 0.11	f : 0.09	g : 0.09	b : 0.06	= : 0.05	] : 0.03	a : 0.03	2 : 0.03	i : 0.03	s : 0.01	h : 0.01	3 : 0.01	
e : 0.15	g : 0.13	c : 0.11	d : 0.11	f : 0.09	] : 0.09	= : 0.08	b : 0.05	2 : 0.05	3 : 0.03	i : 0.03	h : 0.01	a : 0.01	
g : 0.15	e : 0.15	f : 0.13	c : 0.09	a : 0.08	2 : 0.08	= : 0.08	d : 0.05	3 : 0.05	] : 0.03	i : 0.03	b : 0.01	4 : 0.01	h : 0.01	
g : 0.18	] : 0.13	f : 0.13	e : 0.09	= : 0.09	2 : 0.08	i : 0.06	c : 0.05	3 : 0.05	4 : 0.03	a : 0.01	d : 0.01	6 : 0.01	h : 0.01	
g : 0.19	] : 0.13	= : 0.11	e : 0.08	c : 0.08	i : 0.06	3 : 0.06	d : 0.05	f : 0.05	2 : 0.05	4 : 0.03	a : 0.03	6 : 0.01	h : 0.01	
g : 0.21	c : 0.15	= : 0.11	2 : 0.09	f : 0.06	i : 0.06	d : 0.05	e : 0.05	4 : 0.05	3 : 0.05	b : 0.03	6 : 0.01	a : 0.01	h : 0.01	
g : 0.16	c : 0.15	= : 0.11	2 : 0.09	i : 0.08	d : 0.06	e : 0.06	f : 0.05	3 : 0.05	b : 0.03	4 : 0.03	] : 0.03	a : 0.01	6 : 0.01	h : 0.01	
c : 0.16	g : 0.13	= : 0.11	d : 0.08	f : 0.08	2 : 0.08	e : 0.06	i : 0.06	a : 0.06	3 : 0.05	] : 0.03	6 : 0.01	b : 0.01	4 : 0.01	
] : 0.19	2 : 0.15	c : 0.11	= : 0.09	g : 0.09	e : 0.06	i : 0.06	3 : 0.05	f : 0.05	d : 0.03	6 : 0.01	b : 0.01	4 : 0.01	a : 0.01	
c : 0.28	2 : 0.09	i : 0.09	= : 0.09	d : 0.08	e : 0.08	g : 0.08	b : 0.05	f : 0.05	3 : 0.03	4 : 0.01	] : 0.01	
c : 0.26	d : 0.09	e : 0.09	i : 0.09	= : 0.08	b : 0.06	f : 0.06	g : 0.05	4 : 0.03	3 : 0.03	] : 0.03	a : 0.01	8 : 0.01	5 : 0.01	2 : 0.01	
c : 0.24	d : 0.09	e : 0.09	i : 0.09	= : 0.06	b : 0.05	4 : 0.05	] : 0.05	f : 0.05	2 : 0.03	5 : 0.03	g : 0.03	3 : 0.03	8 : 0.01	F : 0.01	a : 0.01	
] : 0.15	e : 0.13	d : 0.11	2 : 0.09	c : 0.08	4 : 0.06	i : 0.06	b : 0.05	= : 0.05	f : 0.05	5 : 0.03	3 : 0.03	> : 0.01	8 : 0.01	F : 0.01	6 : 0.01	
e : 0.18	d : 0.11	2 : 0.09	c : 0.08	4 : 0.06	] : 0.06	b : 0.06	i : 0.06	a : 0.05	= : 0.05	5 : 0.03	g : 0.01	> : 0.01	8 : 0.01	F : 0.01	: : 0.01	f : 0.01	6 : 0.01	

#score	977.7141208365719
#seq	60
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456SOS_UTP18_transcript_m3_run2.txt

#BEAR
!!ddddnnnnndddd]	chr7:5569700-5569980(-)$1	280	256	272	9.5242
ceeeeeooooooeeee	chr17:18965262-18965550(+)$1	288	89	105	8.5121
[ddddooooooddddd	chr7:98479336-98479603(+)$1	267	126	142	6.7541
[eeeeeooooooeeee	chr17:19015760-19016007(-)$1	247	142	158	8.7089
iiiiiinnnnniiiii	chr11:122929940-122930185(-)$1	245	222	238	8.2337
iiddddnnnnndddd:	chr11:122928726-122928972(-)$1	246	82	98	8.1292
c!!eeeeellleeeee	chr7:5569357-5569611(-)$1	254	128	144	7.2086
ggggggnnnnnggggg	chr12:6878988-6879221(+)$1	233	198	214	8.2344
d[ddddoooooodddd	chr21:44479552-44479784(-)$1	232	67	83	6.9058
ccddddnnnnndddd:	chr13:92000340-92000606(+)$1	266	201	217	8.0044
[eeeeellleeeeeee	chr20:2637183-2637414(+)$1	231	119	135	7.2331
!eeeeennnnneeeee	chr4:83816903-83817166(-)$1	263	220	236	10.9607
g!!eeeeellleeeee	chr3:160232628-160232891(-)$1	263	228	244	7.2116
ggggggnnnnnggggg	chr17:19015807-19016027(-)$1	220	33	49	8.2344
:eeeeennnnneeeee	chr16:2819213-2819466(+)$1	253	8	24	9.9933
deeeeeooooooeeee	chr5:137896649-137896870(-)$1	221	146	162	8.4068
)eeeeennnnneeeee	chr11:17096146-17096390(-)$1	244	130	146	10.4509
[eeeeennnnneeeee	chr20:47896781-47897019(+)$1	238	181	197	10.9123
[eeeeennnnneeeee	chr1:109642831-109643036(+)$1	205	38	54	10.9123
""ddddnnnnndddd]	chr2:97559874-97560144(-)$1	270	227	243	9.3281
dd[cccnnnnnccc]d	chr15:66793493-66793753(-)$1	260	72	88	7.5694
%eeeeennnnneeeee	chr12:6619570-6619809(+)$1	239	43	59	10.3731
d[ddddnnnnnddddd	chr17:80051553-80051788(-)$1	235	123	139	9.0230
:eeeeeooooooeeee	chr17:2232338-2232574(-)$1	236	216	232	7.7899
ccceeeeellleeeee	chr1:76253498-76253738(+)$1	240	198	214	6.8956
:eeeeeooooooeeee	chr11:122929521-122929760(-)$1	239	195	211	7.7899
ccceeeeellleeeee	chr20:26190359-26190593(-)$1	234	135	151	6.8956
#eeeeennnnneeeee	chr1:173835915-173836182(-)$1	267	132	148	10.8910
:eeeeennnnneeeee	chr16:70563327-70563592(+)$1	265	228	244	9.9933
%eeeeeooooooeeee	chr4:53578777-53579004(+)$1	227	153	169	8.1697
eee[bbnnnnnbb]ee	chr11:17097223-17097471(-)$1	248	142	158	7.4461
Deeeeennnnneeeee	chr4:174253033-174253339(-)$1	306	153	169	9.8551
ggggggnnnnnggggg	chr3:186502507-186502735(+)$1	228	100	116	8.2344
""ddddnnnnndddd3	chr2:203157698-203157926(+)$1	228	66	82	9.2111
!eeeeennnnneeeee	chr9:33952673-33952919(-)$1	246	213	229	10.9607
======nnnnn=====	chr17:27050366-27050608(+)$1	242	87	103	8.4977
f[eeeeellleeeee]	chr17:19091288-19091510(+)$1	222	66	82	6.9882
ggddddnnnnndddd:	chr10:101996745-101996999(-)$1	254	182	198	8.1188
eeeeeeooooooeeee	chr2:159313512-159313832(+)$1	320	231	247	8.3807
c[ddddnnnnndddd]	chr15:66795058-66795303(-)$1	245	224	240	9.2821
[eeeeellleeeeeee	chr20:2637214-2637441(+)$1	227	88	104	7.2331
ggggggnnnnnggggg	chr17:74557628-74557883(+)$1	255	216	232	8.2344
:eeeeeooooooeeee	chr11:122929515-122929721(-)$1	206	156	172	7.7899
dd[cccnnnnnccc]d	chr11:122929985-122930224(-)$1	239	198	214	7.5694
iiiiiinnnnniiiii	chr22:22899783-22900056(-)$1	273	176	192	8.2337
b[ddddnnnnndddd]	chr4:1803739-1804021(+)$1	282	220	236	9.0462
e[ddddnnnnndddd]	chr1:109642808-109643021(+)$1	213	5	21	9.1508
)eeeeennnnneeeee	chr11:17096098-17096346(-)$1	248	86	102	10.4509
!ddddoooooodddd]	chr16:1426158-1426406(-)$1	248	131	147	6.9564
!!eeeeemmmmeeeee	chr11:62622002-62622223(-)$1	221	135	151	6.6200
!!ddddnnnnndddd2	chr1:228333670-228333930(+)$1	260	23	39	9.2239
dd[eeeeellleeeee	chr17:27050597-27050866(+)$1	269	90	106	6.8716
iiiiiinnnnniiiii	chr11:75111337-75111658(+)$1	321	163	179	8.2337
eeee[annnnna]eee	chr5:138614414-138614638(+)$1	224	76	92	9.3233

#otherMatches

#Seq PSSM
AGGCGCUAACUGCGCG	chr7:5569700-5569980(-)$1	280	256	272	9.5242
cguugcuuggcugcaa	chr17:18965262-18965550(+)$1	288	89	105	8.5121
UGCCUUCUAUUAGGCC	chr7:98479336-98479603(+)$1	267	126	142	6.7541
agagagguagcguuuu	chr17:19015760-19016007(-)$1	247	142	158	8.7089
AGGCAGCCAUCUUGUC	chr11:122929940-122930185(-)$1	245	222	238	8.2337
GAGCUGGAUUUCAGUG	chr11:122928726-122928972(-)$1	246	82	98	8.1292
CUGCCGCGCGCCGCGG	chr7:5569357-5569611(-)$1	254	128	144	7.2086
UGGGCUGGCAAAGUCU	chr12:6878988-6879221(+)$1	233	198	214	8.2344
CUUGGCCAGCCUGCCA	chr21:44479552-44479784(-)$1	232	67	83	6.9058
CCCCUCGGGGAGAGGA	chr13:92000340-92000606(+)$1	266	201	217	8.0044
GUUCACCUAGUGAGUG	chr20:2637183-2637414(+)$1	231	119	135	7.2331
UGAAUGUUUUUCGUUU	chr4:83816903-83817166(-)$1	263	220	236	10.9607
AUUUUUUAGAGUAAAA	chr3:160232628-160232891(-)$1	263	228	244	7.2116
UUUGCGGCAGAUGUAG	chr17:19015807-19016027(-)$1	220	33	49	8.2344
AGCCUGGCCCUCAGGC	chr16:2819213-2819466(+)$1	253	8	24	9.9933
UGAAGAUGCAGUUCUU	chr5:137896649-137896870(-)$1	221	146	162	8.4068
aguuuccaccagaaau	chr11:17096146-17096390(-)$1	244	130	146	10.4509
UCCCAGCUCCCCUGGG	chr20:47896781-47897019(+)$1	238	181	197	10.9123
UCGCGUGUGAGGCGCG	chr1:109642831-109643036(+)$1	205	38	54	10.9123
GGUCUGUGUCUCAGAA	chr2:97559874-97560144(-)$1	270	227	243	9.3281
UAUACUCUGCAAGUCU	chr15:66793493-66793753(-)$1	260	72	88	7.5694
GGAACAGGGCAUGUUC	chr12:6619570-6619809(+)$1	239	43	59	10.3731
GACCACUGUUUGUGGC	chr17:80051553-80051788(-)$1	235	123	139	9.0230
GGUAUUAGGGUGGGUG	chr17:2232338-2232574(-)$1	236	216	232	7.7899
CUCUGGGACAAUCUUA	chr1:76253498-76253738(+)$1	240	198	214	6.8956
UAGUAAUUUGUUUUAU	chr11:122929521-122929760(-)$1	239	195	211	7.7899
gacauucguggcgaau	chr20:26190359-26190593(-)$1	234	135	151	6.8956
ACAGAAGGGAUUUCUG	chr1:173835915-173836182(-)$1	267	132	148	10.8910
UUACUGUUUUUCAGUA	chr16:70563327-70563592(+)$1	265	228	244	9.9933
AGCCGGAGGUUCCCGG	chr4:53578777-53579004(+)$1	227	153	169	8.1697
gugaGCUUUAUGUGCA	chr11:17097223-17097471(-)$1	248	142	158	7.4461
AGGCAAUUAUUUUGCU	chr4:174253033-174253339(-)$1	306	153	169	9.8551
UUCGGGACUGACCUGA	chr3:186502507-186502735(+)$1	228	100	116	8.2344
AAGGGCCAAGUGUUCA	chr2:203157698-203157926(+)$1	228	66	82	9.2111
UGAAAGUACCCCUUUC	chr9:33952673-33952919(-)$1	246	213	229	10.9607
UGAUGGAAAAAUCAUU	chr17:27050366-27050608(+)$1	242	87	103	8.4977
uauaguguguuacuag	chr17:19091288-19091510(+)$1	222	66	82	6.9882
CUGUGAUGGAUUUGCU	chr10:101996745-101996999(-)$1	254	182	198	8.1188
CUCGCGGGAGGGCGCG	chr2:159313512-159313832(+)$1	320	231	247	8.3807
GGAGGCCGAAUGUUUG	chr15:66795058-66795303(-)$1	245	224	240	9.2821
GUUCACCUAGUGAGUG	chr20:2637214-2637441(+)$1	227	88	104	7.2331
UCAGCAUAUCCUGCUG	chr17:74557628-74557883(+)$1	255	216	232	8.2344
UAGUAAUUUGUUUUAU	chr11:122929515-122929721(-)$1	206	156	172	7.7899
GAGCUAUGUACUGGGU	chr11:122929985-122930224(-)$1	239	198	214	7.5694
guuuucucucuggaaa	chr22:22899783-22900056(-)$1	273	176	192	8.2337
CAGAGGGCCAGCCUCA	chr4:1803739-1804021(+)$1	282	220	236	9.0462
UGUUUUAGGGAGGGAG	chr1:109642808-109643021(+)$1	213	5	21	9.1508
aguuuccaccagaaau	chr11:17096098-17096346(-)$1	248	86	102	10.4509
GCCCUGGAGAGAGGGA	chr16:1426158-1426406(-)$1	248	131	147	6.9564
UUGUUUAUGAAUAAGC	chr11:62622002-62622223(-)$1	221	135	151	6.6200
CAGCCCCCGAUGGGUG	chr1:228333670-228333930(+)$1	260	23	39	9.2239
GCUCACCCCUUGGGUG	chr17:27050597-27050866(+)$1	269	90	106	6.8716
UGCUGCGUUCUGUGGC	chr11:75111337-75111658(+)$1	321	163	179	8.2337
AGGCUCAUGUGGUGCC	chr5:138614414-138614638(+)$1	224	76	92	9.3233

#DB
..((((.....)))).	chr7:5569700-5569980(-)$1	1	256	272	9.5242
((((((......))))	chr17:18965262-18965550(+)$1	1	89	105	8.5121
.((((......)))))	chr7:98479336-98479603(+)$1	1	126	142	6.7541
.(((((......))))	chr17:19015760-19016007(-)$1	1	142	158	8.7089
((((((.....)))))	chr11:122929940-122930185(-)$1	1	222	238	8.2337
))((((.....)))).	chr11:122928726-122928972(-)$1	1	82	98	8.1292
(..(((((...)))))	chr7:5569357-5569611(-)$1	1	128	144	7.2086
((((((.....)))))	chr12:6878988-6879221(+)$1	1	198	214	8.2344
(.((((......))))	chr21:44479552-44479784(-)$1	1	67	83	6.9058
))((((.....)))).	chr13:92000340-92000606(+)$1	1	201	217	8.0044
.(((((...)))))))	chr20:2637183-2637414(+)$1	1	119	135	7.2331
.(((((.....)))))	chr4:83816903-83817166(-)$1	1	220	236	10.9607
(..(((((...)))))	chr3:160232628-160232891(-)$1	1	228	244	7.2116
((((((.....)))))	chr17:19015807-19016027(-)$1	1	33	49	8.2344
.(((((.....)))))	chr16:2819213-2819466(+)$1	1	8	24	9.9933
)(((((......))))	chr5:137896649-137896870(-)$1	1	146	162	8.4068
.(((((.....)))))	chr11:17096146-17096390(-)$1	1	130	146	10.4509
.(((((.....)))))	chr20:47896781-47897019(+)$1	1	181	197	10.9123
.(((((.....)))))	chr1:109642831-109643036(+)$1	1	38	54	10.9123
..((((.....)))).	chr2:97559874-97560144(-)$1	1	227	243	9.3281
((.(((.....))).)	chr15:66793493-66793753(-)$1	1	72	88	7.5694
.(((((.....)))))	chr12:6619570-6619809(+)$1	1	43	59	10.3731
(.((((.....)))))	chr17:80051553-80051788(-)$1	1	123	139	9.0230
.(((((......))))	chr17:2232338-2232574(-)$1	1	216	232	7.7899
)))(((((...)))))	chr1:76253498-76253738(+)$1	1	198	214	6.8956
.(((((......))))	chr11:122929521-122929760(-)$1	1	195	211	7.7899
)))(((((...)))))	chr20:26190359-26190593(-)$1	1	135	151	6.8956
.(((((.....)))))	chr1:173835915-173836182(-)$1	1	132	148	10.8910
.(((((.....)))))	chr16:70563327-70563592(+)$1	1	228	244	9.9933
.(((((......))))	chr4:53578777-53579004(+)$1	1	153	169	8.1697
(((.((.....)).))	chr11:17097223-17097471(-)$1	1	142	158	7.4461
)(((((.....)))))	chr4:174253033-174253339(-)$1	1	153	169	9.8551
((((((.....)))))	chr3:186502507-186502735(+)$1	1	100	116	8.2344
..((((.....)))).	chr2:203157698-203157926(+)$1	1	66	82	9.2111
.(((((.....)))))	chr9:33952673-33952919(-)$1	1	213	229	10.9607
((((((.....)))))	chr17:27050366-27050608(+)$1	1	87	103	8.4977
(.(((((...))))).	chr17:19091288-19091510(+)$1	1	66	82	6.9882
))((((.....)))).	chr10:101996745-101996999(-)$1	1	182	198	8.1188
)(((((......))))	chr2:159313512-159313832(+)$1	1	231	247	8.3807
(.((((.....)))).	chr15:66795058-66795303(-)$1	1	224	240	9.2821
.(((((...)))))))	chr20:2637214-2637441(+)$1	1	88	104	7.2331
((((((.....)))))	chr17:74557628-74557883(+)$1	1	216	232	8.2344
.(((((......))))	chr11:122929515-122929721(-)$1	1	156	172	7.7899
((.(((.....))).)	chr11:122929985-122930224(-)$1	1	198	214	7.5694
((((((.....)))))	chr22:22899783-22900056(-)$1	1	176	192	8.2337
(.((((.....)))).	chr4:1803739-1804021(+)$1	1	220	236	9.0462
(.((((.....)))).	chr1:109642808-109643021(+)$1	1	5	21	9.1508
.(((((.....)))))	chr11:17096098-17096346(-)$1	1	86	102	10.4509
.((((......)))).	chr16:1426158-1426406(-)$1	1	131	147	6.9564
..(((((....)))))	chr11:62622002-62622223(-)$1	1	135	151	6.6200
..((((.....)))).	chr1:228333670-228333930(+)$1	1	23	39	9.2239
((.(((((...)))))	chr17:27050597-27050866(+)$1	1	90	106	6.8716
((((((.....)))))	chr11:75111337-75111658(+)$1	1	163	179	8.2337
((((.(.....).)))	chr5:138614414-138614638(+)$1	1	76	92	9.3233

#PSSM
! : 0.11	c : 0.11	[ : 0.11	g : 0.11	d : 0.11	: : 0.09	i : 0.07	e : 0.07	) : 0.03	" : 0.03	% : 0.03	# : 0.01	D : 0.01	= : 0.01	f : 0.01	b : 0.01	
e : 0.42	[ : 0.11	! : 0.09	d : 0.09	g : 0.09	i : 0.07	c : 0.05	" : 0.03	= : 0.01	
e : 0.46	d : 0.25	g : 0.07	i : 0.05	[ : 0.05	! : 0.03	c : 0.03	= : 0.01	
e : 0.53	d : 0.25	g : 0.07	i : 0.05	c : 0.03	[ : 0.01	= : 0.01	
e : 0.51	d : 0.25	g : 0.07	i : 0.05	c : 0.03	b : 0.01	= : 0.01	[ : 0.01	
e : 0.51	d : 0.22	g : 0.07	i : 0.05	o : 0.03	c : 0.03	b : 0.01	= : 0.01	a : 0.01	
n : 0.62	o : 0.20	e : 0.12	l : 0.03	
n : 0.62	o : 0.20	e : 0.09	l : 0.05	m : 0.01	
n : 0.62	o : 0.20	l : 0.14	m : 0.01	
n : 0.62	o : 0.20	l : 0.11	e : 0.03	m : 0.01	
n : 0.62	o : 0.20	l : 0.09	e : 0.05	m : 0.01	
e : 0.37	d : 0.24	o : 0.16	g : 0.07	i : 0.05	c : 0.03	b : 0.01	= : 0.01	a : 0.01	
e : 0.51	d : 0.25	g : 0.07	i : 0.05	c : 0.03	b : 0.01	= : 0.01	] : 0.01	
e : 0.53	d : 0.25	g : 0.07	i : 0.05	c : 0.03	] : 0.01	= : 0.01	
e : 0.55	d : 0.25	g : 0.07	i : 0.05	] : 0.03	= : 0.01	
e : 0.53	] : 0.12	d : 0.09	g : 0.07	i : 0.05	: : 0.05	3 : 0.01	= : 0.01	2 : 0.01	

#score	461.1636686070682
#seq	54
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_UTR_m3_run2.txt

#BEAR
iiiiiiinnnnniiiiii	chr11:75111412-75111623(+)$1	211	87	105	11.3008
ggggcccnnnnnccc22g	chr11:93463672-93463907(-)$1	235	31	49	10.7192
eeeecccnnnnnccc22e	chr15:25227104-25227332(+)$1	228	99	117	9.8091
gggggggnnnnngggggg	chr11:93464058-93464264(-)$1	206	167	185	11.2918
gggggggnnnnngggggg	chr11:93464064-93464273(-)$1	209	176	194	11.2918
gggggggnnnnngggggg	chr11:93464075-93464282(-)$1	207	185	203	11.2918
!ffffffnnnnnffffff	chr22:20113864-20114092(+)$1	228	58	76	11.0898
cc[ddddnnnnnddddcc	chr3:12881708-12881926(-)$1	218	127	145	9.5052
!ffffffnnnnnffffff	chr22:20113854-20114064(+)$1	210	68	86	11.0898
cc[ddddnnnnndddd]c	chr16:23478561-23478773(-)$1	212	9	27	9.7388
[ffffffnnnnnffffff	chr17:7481276-7481480(+)$1	204	6	24	11.0683
hhh[cccnnnnnccc]hh	chr18:47017938-47018152(-)$1	214	140	158	10.0191
iiiiiiiiillliiiiii	chr11:93463655-93463859(-)$1	204	182	200	7.4416
"""ddddnnnnndddd33	chr3:12881784-12881992(-)$1	208	107	125	9.5307
""eeeeennnnneeeeec	chr16:67697490-67697776(-)$1	286	239	257	9.3600
ff[ddddnnnnnddddff	chr3:12881776-12881979(-)$1	203	180	198	9.5975
iiiiiiiiillliiiiii	chr11:93463643-93463846(-)$1	203	169	187	7.4416
dd!!cccnnnnnccc22d	chr16:2012320-2012525(-)$1	205	73	91	9.8598
[ffffffnnnnnffffff	chr17:7481216-7481429(+)$1	213	66	84	11.0683
Effffffnnnnnffffff	chr15:83424668-83424918(+)$1	250	175	193	10.0193
dddddddnnnnndddd]d	chr15:25227053-25227297(+)$1	244	164	182	8.8285
e[a[cccnnnnnccc333	chr14:65569012-65569307(-)$1	295	29	47	10.6096
:ffffffnnnnnffffff	chr11:62609112-62609348(-)$1	236	133	151	10.1693
=========lll======	chr16:23478538-23478761(-)$1	223	97	115	7.8628
eeeee[annnnna]eeee	chr19:5140270-5140504(+)$1	234	47	65	9.1543
dd!!cccnnnnnccc22d	chr16:2012360-2012567(-)$1	207	115	133	9.8598
iiiiiiinnnnniiiiii	chr11:75111426-75111679(+)$1	253	73	91	11.3008
bb[ddddnnnnndddd]b	chr17:8076747-8076960(-)$1	213	127	145	9.0353
!ffffffnnnnnffffff	chr22:20113823-20114054(+)$1	231	99	117	11.0898
iiiiiiiiillliiiiii	chr11:93463630-93463843(-)$1	213	166	184	7.4416
:ffffffnnnnnffffff	chr11:62609050-62609259(-)$1	209	44	62	10.1693
iiiii[ccclllccciii	chr17:36884631-36884917(+)$1	286	57	75	7.1230
gggggggnnnnngggggg	chr15:83424659-83424864(+)$1	205	184	202	11.2918
:ffffffnnnnnffffff	chr11:62609012-62609221(-)$1	209	6	24	10.1693
:ffffffnnnnnffffff	chr11:62609021-62609250(-)$1	229	35	53	10.1693
:ffffffnnnnnffffff	chr11:93464161-93464366(-)$1	205	170	188	10.1693
iiiiiiiiillliiiiii	chr11:93463646-93463849(-)$1	203	172	190	7.4416
iiiiiiiiillliiiiii	chr11:93463616-93463830(-)$1	214	153	171	7.4416
"""ddddnnnnndddd33	chr3:12881802-12882006(-)$1	204	121	139	9.5307
[ffffffnnnnnffffff	chr17:7481172-7481412(+)$1	240	110	128	11.0683
hhh[cccnnnnnccc]hh	chr18:47017933-47018138(-)$1	205	126	144	10.0191
iiiiiiiiillliiiiii	chr11:93463649-93463853(-)$1	204	176	194	7.4416
dddddddnnnnndddd]d	chr15:25227039-25227253(+)$1	214	178	196	8.8285
:ffffffnnnnnffffff	chr11:62609093-62609307(-)$1	214	92	110	10.1693
iiiiiiinnnnniiiiii	chr11:75111332-75111562(+)$1	230	167	185	11.3008
gggggggnnnnngggggg	chr13:45911512-45911723(-)$1	211	0	18	11.2918
gggggggnnnnngggggg	chr13:26828245-26828454(+)$1	209	8	26	11.2918
:ffffffnnnnnffffff	chr11:62609081-62609293(-)$1	212	78	96	10.1693

#otherMatches

#Seq PSSM
GUGCUGCGUUCUGUGGCA	chr11:75111412-75111623(+)$1	211	87	105	11.3008
CUGACAGGACAACUGGAU	chr11:93463672-93463907(-)$1	235	31	49	10.7192
CACUCUGAAAUCCAGUCA	chr15:25227104-25227332(+)$1	228	99	117	9.8091
UGAUUUUUCUUUAAAAUC	chr11:93464058-93464264(-)$1	206	167	185	11.2918
UGAUUUUUCUUUAAAAUC	chr11:93464064-93464273(-)$1	209	176	194	11.2918
UGAUUUUUCUUUAAAAUC	chr11:93464075-93464282(-)$1	207	185	203	11.2918
UUGCAGACUCACUCUGCA	chr22:20113864-20114092(+)$1	228	58	76	11.0898
GGCAGGAAAGCCUCCUUC	chr3:12881708-12881926(-)$1	218	127	145	9.5052
UUGCAGACUCACUCUGCA	chr22:20113854-20114064(+)$1	210	68	86	11.0898
CAGAUGCUCugugugugu	chr16:23478561-23478773(-)$1	212	9	27	9.7388
AUUCCCUCUCCAAGGGGA	chr17:7481276-7481480(+)$1	204	6	24	11.0683
AUACUGAAUGAGUUACUG	chr18:47017938-47018152(-)$1	214	140	158	10.0191
GUAAUAAUCCAGGAUUGU	chr11:93463655-93463859(-)$1	204	182	200	7.4416
CAAGCCUGGCAGAGGCAC	chr3:12881784-12881992(-)$1	208	107	125	9.5307
CAGGGUGAAGGACACCUG	chr16:67697490-67697776(-)$1	286	239	257	9.3600
GGCAGGAAAGCCUCCUUC	chr3:12881776-12881979(-)$1	203	180	198	9.5975
GUAAUAAUCCAGGAUUGU	chr11:93463643-93463846(-)$1	203	169	187	7.4416
CUUAACCACACGGGUCCA	chr16:2012320-2012525(-)$1	205	73	91	9.8598
AUUCCCUCUCCAAGGGGA	chr17:7481216-7481429(+)$1	213	66	84	11.0683
UUCCUAUAGAAAAUAGGA	chr15:83424668-83424918(+)$1	250	175	193	10.0193
GUCAGUGUGCCUCACUAG	chr15:25227053-25227297(+)$1	244	164	182	8.8285
GGGGGCCGACCGGGCGUG	chr14:65569012-65569307(-)$1	295	29	47	10.6096
cguccucuauccgaggac	chr11:62609112-62609348(-)$1	236	133	151	10.1693
GGGAAAUGCGAAGCAUUU	chr16:23478538-23478761(-)$1	223	97	115	7.8628
UGCAGGGCUGUCUGCUGC	chr19:5140270-5140504(+)$1	234	47	65	9.1543
CUUAACCACACGGGUCCA	chr16:2012360-2012567(-)$1	207	115	133	9.8598
GUGCUGCGUUCUGUGGCA	chr11:75111426-75111679(+)$1	253	73	91	11.3008
gaaacgugauuaacgucu	chr17:8076747-8076960(-)$1	213	127	145	9.0353
UUGCAGACUCACUCUGCA	chr22:20113823-20114054(+)$1	231	99	117	11.0898
GUAAUAAUCCAGGAUUGU	chr11:93463630-93463843(-)$1	213	166	184	7.4416
cguccucuauccgaggac	chr11:62609050-62609259(-)$1	209	44	62	10.1693
CAUGAGAGCAGAGCUUCG	chr17:36884631-36884917(+)$1	286	57	75	7.1230
UUCCUAUAGAAAAUAGGA	chr15:83424659-83424864(+)$1	205	184	202	11.2918
cguccucuauccgaggac	chr11:62609012-62609221(-)$1	209	6	24	10.1693
cguccucuauccgaggac	chr11:62609021-62609250(-)$1	229	35	53	10.1693
AGUAGGUUUUCUAUCUGC	chr11:93464161-93464366(-)$1	205	170	188	10.1693
GUAAUAAUCCAGGAUUGU	chr11:93463646-93463849(-)$1	203	172	190	7.4416
GUAAUAAUCCAGGAUUGU	chr11:93463616-93463830(-)$1	214	153	171	7.4416
CAAGCCUGGCAGAGGCAC	chr3:12881802-12882006(-)$1	204	121	139	9.5307
AUUCCCUCUCCAAGGGGA	chr17:7481172-7481412(+)$1	240	110	128	11.0683
AUACUGAAUGAGUUACUG	chr18:47017933-47018138(-)$1	205	126	144	10.0191
GUAAUAAUCCAGGAUUGU	chr11:93463649-93463853(-)$1	204	176	194	7.4416
GUCAGUGUGCCUCACUAG	chr15:25227039-25227253(+)$1	214	178	196	8.8285
cguccucuauccgaggac	chr11:62609093-62609307(-)$1	214	92	110	10.1693
GUGCUGCGUUCUGUGGCA	chr11:75111332-75111562(+)$1	230	167	185	11.3008
GAACAAUUUACUGUUGUU	chr13:45911512-45911723(-)$1	211	0	18	11.2918
CCUCCUCUCUUUGAGGAG	chr13:26828245-26828454(+)$1	209	8	26	11.2918
cguccucuauccgaggac	chr11:62609081-62609293(-)$1	212	78	96	10.1693

#DB
(((((((.....))))))	chr11:75111412-75111623(+)$1	1	87	105	11.3008
(((((((.....)))..)	chr11:93463672-93463907(-)$1	1	31	49	10.7192
(((((((.....)))..)	chr15:25227104-25227332(+)$1	1	99	117	9.8091
(((((((.....))))))	chr11:93464058-93464264(-)$1	1	167	185	11.2918
(((((((.....))))))	chr11:93464064-93464273(-)$1	1	176	194	11.2918
(((((((.....))))))	chr11:93464075-93464282(-)$1	1	185	203	11.2918
.((((((.....))))))	chr22:20113864-20114092(+)$1	1	58	76	11.0898
((.((((.....))))))	chr3:12881708-12881926(-)$1	1	127	145	9.5052
.((((((.....))))))	chr22:20113854-20114064(+)$1	1	68	86	11.0898
((.((((.....)))).)	chr16:23478561-23478773(-)$1	1	9	27	9.7388
.((((((.....))))))	chr17:7481276-7481480(+)$1	1	6	24	11.0683
(((.(((.....))).))	chr18:47017938-47018152(-)$1	1	140	158	10.0191
(((((((((...))))))	chr11:93463655-93463859(-)$1	1	182	200	7.4416
...((((.....))))..	chr3:12881784-12881992(-)$1	1	107	125	9.5307
..(((((.....))))))	chr16:67697490-67697776(-)$1	1	239	257	9.3600
((.((((.....))))))	chr3:12881776-12881979(-)$1	1	180	198	9.5975
(((((((((...))))))	chr11:93463643-93463846(-)$1	1	169	187	7.4416
((..(((.....)))..)	chr16:2012320-2012525(-)$1	1	73	91	9.8598
.((((((.....))))))	chr17:7481216-7481429(+)$1	1	66	84	11.0683
(((((((.....))))))	chr15:83424668-83424918(+)$1	1	175	193	10.0193
(((((((.....)))).)	chr15:25227053-25227297(+)$1	1	164	182	8.8285
(.(.(((.....)))...	chr14:65569012-65569307(-)$1	1	29	47	10.6096
.((((((.....))))))	chr11:62609112-62609348(-)$1	1	133	151	10.1693
(((((((((...))))))	chr16:23478538-23478761(-)$1	1	97	115	7.8628
(((((.(.....).))))	chr19:5140270-5140504(+)$1	1	47	65	9.1543
((..(((.....)))..)	chr16:2012360-2012567(-)$1	1	115	133	9.8598
(((((((.....))))))	chr11:75111426-75111679(+)$1	1	73	91	11.3008
((.((((.....)))).)	chr17:8076747-8076960(-)$1	1	127	145	9.0353
.((((((.....))))))	chr22:20113823-20114054(+)$1	1	99	117	11.0898
(((((((((...))))))	chr11:93463630-93463843(-)$1	1	166	184	7.4416
.((((((.....))))))	chr11:62609050-62609259(-)$1	1	44	62	10.1693
(((((.(((...))))))	chr17:36884631-36884917(+)$1	1	57	75	7.1230
(((((((.....))))))	chr15:83424659-83424864(+)$1	1	184	202	11.2918
.((((((.....))))))	chr11:62609012-62609221(-)$1	1	6	24	10.1693
.((((((.....))))))	chr11:62609021-62609250(-)$1	1	35	53	10.1693
.((((((.....))))))	chr11:93464161-93464366(-)$1	1	170	188	10.1693
(((((((((...))))))	chr11:93463646-93463849(-)$1	1	172	190	7.4416
(((((((((...))))))	chr11:93463616-93463830(-)$1	1	153	171	7.4416
...((((.....))))..	chr3:12881802-12882006(-)$1	1	121	139	9.5307
.((((((.....))))))	chr17:7481172-7481412(+)$1	1	110	128	11.0683
(((.(((.....))).))	chr18:47017933-47018138(-)$1	1	126	144	10.0191
(((((((((...))))))	chr11:93463649-93463853(-)$1	1	176	194	7.4416
(((((((.....)))).)	chr15:25227039-25227253(+)$1	1	178	196	8.8285
.((((((.....))))))	chr11:62609093-62609307(-)$1	1	92	110	10.1693
(((((((.....))))))	chr11:75111332-75111562(+)$1	1	167	185	11.3008
(((((((.....))))))	chr13:45911512-45911723(-)$1	1	0	18	11.2918
(((((((.....))))))	chr13:26828245-26828454(+)$1	1	8	26	11.2918
.((((((.....))))))	chr11:62609081-62609293(-)$1	1	78	96	10.1693

#PSSM
i : 0.20	g : 0.14	: : 0.14	d : 0.08	e : 0.06	! : 0.06	[ : 0.06	" : 0.06	c : 0.04	h : 0.04	f : 0.02	E : 0.02	= : 0.02	b : 0.02	
f : 0.31	i : 0.20	g : 0.14	d : 0.08	" : 0.06	e : 0.04	c : 0.04	h : 0.04	[ : 0.02	= : 0.02	b : 0.02	
f : 0.29	i : 0.20	g : 0.14	[ : 0.08	e : 0.06	h : 0.04	" : 0.04	! : 0.04	d : 0.04	a : 0.02	= : 0.02	
f : 0.29	i : 0.20	d : 0.16	g : 0.14	e : 0.06	[ : 0.06	! : 0.04	= : 0.02	
f : 0.29	i : 0.20	d : 0.16	c : 0.14	g : 0.12	e : 0.04	= : 0.02	
f : 0.29	i : 0.18	d : 0.16	c : 0.14	g : 0.12	[ : 0.04	e : 0.02	= : 0.02	
f : 0.29	i : 0.18	c : 0.16	d : 0.16	g : 0.12	e : 0.02	= : 0.02	a : 0.02	
n : 0.83	i : 0.12	= : 0.02	c : 0.02	
n : 0.83	i : 0.12	= : 0.02	c : 0.02	
n : 0.83	l : 0.16	
n : 0.83	l : 0.16	
n : 0.83	l : 0.16	
f : 0.29	i : 0.18	c : 0.16	d : 0.16	g : 0.12	e : 0.02	= : 0.02	a : 0.02	
f : 0.29	i : 0.18	c : 0.16	d : 0.16	g : 0.12	e : 0.02	= : 0.02	] : 0.02	
f : 0.29	i : 0.18	c : 0.16	d : 0.16	g : 0.12	e : 0.04	= : 0.02	
f : 0.29	i : 0.20	d : 0.16	g : 0.12	2 : 0.08	] : 0.04	e : 0.04	3 : 0.02	= : 0.02	
f : 0.31	i : 0.20	g : 0.12	2 : 0.08	] : 0.08	3 : 0.06	h : 0.04	e : 0.04	c : 0.02	= : 0.02	
f : 0.31	i : 0.20	g : 0.14	d : 0.08	c : 0.06	3 : 0.06	e : 0.04	h : 0.04	= : 0.02	b : 0.02	

#score	472.9752490637774
#seq	48
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF355WVE_HNRNPUL1_CDS_m2_run2.txt

#BEAR
JJJJJZZZCCC}DDDDYYBB}HHHHHHHHEEEEEFFFFFF	chr13:113760978-113761308(+)$1	330	277	317	31.9321
FFAEEEEE{DDDD{DDDDCCCJJJJJJJJJJ{DDDD{BBb	chr17:41622796-41623050(+)$1	254	61	101	32.4421

#otherMatches

#Seq PSSM
GGGCCCAGUGGGGGCCAACAUCACCUCCUUCCCCUCCCAU	chr13:113760978-113761308(+)$1	330	277	317	31.9321
gggggcuguggugagaguaggggcugggugcggggcgggg	chr17:41622796-41623050(+)$1	254	61	101	32.4421

#DB
)))))...))).))))..)).)))))))))))))))))))	chr13:113760978-113761308(+)$1	1	277	317	31.9321
((((((((.((((.(((((((((((((((((.((((.(((	chr17:41622796-41623050(+)$1	1	61	101	32.4421

#PSSM
J : 0.50	F : 0.50	
J : 0.50	F : 0.50	
J : 0.50	A : 0.50	
J : 0.50	E : 0.50	
J : 0.50	E : 0.50	
Z : 0.50	E : 0.50	
Z : 0.50	E : 0.50	
Z : 0.50	E : 0.50	
C : 0.50	{ : 0.50	
C : 0.50	D : 0.50	
C : 0.50	D : 0.50	
} : 0.50	D : 0.50	
D : 1.00	
D : 0.50	{ : 0.50	
D : 1.00	
D : 1.00	
Y : 0.50	D : 0.50	
Y : 0.50	D : 0.50	
B : 0.50	C : 0.50	
B : 0.50	C : 0.50	
} : 0.50	C : 0.50	
H : 0.50	J : 0.50	
H : 0.50	J : 0.50	
H : 0.50	J : 0.50	
H : 0.50	J : 0.50	
H : 0.50	J : 0.50	
H : 0.50	J : 0.50	
H : 0.50	J : 0.50	
H : 0.50	J : 0.50	
E : 0.50	J : 0.50	
E : 0.50	J : 0.50	
E : 0.50	{ : 0.50	
E : 0.50	D : 0.50	
E : 0.50	D : 0.50	
F : 0.50	D : 0.50	
F : 0.50	D : 0.50	
F : 0.50	{ : 0.50	
F : 0.50	B : 0.50	
F : 0.50	B : 0.50	
F : 0.50	b : 0.50	

#score	64.37436194545002
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_transcript_m3_run1.txt

#BEAR
ccc####dddddddduuuuuuuuuuuudddd]dddd	chr22:24498040-24498304(+)$1	264	24	60	25.0160
ff[dddd[bb[ddddtttttttttttdddd22bb]d	chr2:219265220-219265472(+)$1	252	183	219	24.5512
dddd!!eeeee[cccuuuuuuuuuuuuccc]eeeee	chrX:73507087-73507318(-)$1	231	4	40	25.5026
[eeeee####dddduuuuuuuuuuuuddddeeeee]	chr3:49057495-49057698(-)$1	203	57	93	26.1524
eeee####eeeeevvvvvvvvvvvvveeeee4444e	chr9:111808519-111808807(-)$1	288	176	212	25.3161
#dddd!!hhhhhhhhttttttttttthhhhhhhh]d	chr16:75278083-75278353(-)$1	270	68	104	23.8042
eee[bb[ccc[ddddtttttttttttdddd22ccc]	chr17:19248020-19248282(-)$1	262	172	208	25.9589
eeee[bb[bb[bb[auuuuuuuuuuuua]bbbbbbe	chr17:29058857-29059131(+)$1	274	52	88	23.2841
========[a[dddduuuuuuuuuuuudddda]===	chr9:4850243-4850468(+)$1	225	72	108	27.8823
[eeeee####dddduuuuuuuuuuuuddddeeeee]	chr3:49057560-49057798(-)$1	238	157	193	26.1524
dddd"""ggggggguuuuuuuuuuuuggggggg333	chr17:57918695-57918906(+)$1	211	94	130	26.9467
gg[bb[iiiiiiiiitttttttttttiiiiiiiii]	chr17:80054602-80054856(-)$1	254	72	108	26.5881
====[bb"""ddddyyyyyyyyyyyyyyyydddd22	chr16:3766825-3767165(-)$1	340	269	305	22.7041
=[dddd[hhhhhhhhttttttttttthhhhhhhh]d	chrX:139006282-139006555(-)$1	273	187	223	23.7007
cccccc!!ccc[bbvvvvvvvvvvvvvbb]ccc]cc	chr11:2156310-2156555(-)$1	245	139	175	25.2775
""bb[iiiiiiiiiuuuuuuuuuuuuiiiiiiiii]	chr1:205418500-205418747(-)$1	247	196	232	27.2111
eeee!!ccc!!ddddtttttttttttddddccc22e	chrX:49773236-49773465(+)$1	229	100	136	26.4314
======bb[ffffffwwwwwwwwwwwwwwffffffb	chr9:97847295-97847585(+)$1	290	220	256	23.8315
============[cccssssssssssccc]======	chr9:111808314-111808569(-)$1	255	89	125	20.8827
ggg!!ccc!!eeeeevvvvvvvvvvvvveeeeeccc	chr9:96939289-96939538(+)$1	249	67	103	25.9496
hhhhhhhhhhhcccuuuuuuuuuuuuccc22hhhhh	chr1:1821790-1822033(-)$1	243	140	176	23.7818
eeeee[ffffffwwwwwwwwwwwwwwffffffeeee	chr1:71533224-71533451(-)$1	227	77	113	22.6103
::ggggggg[cccvvvvvvvvvvvvvccc]gggggg	chr11:57408651-57408884(+)$1	233	146	182	25.1480
=[bb[dddd!!ddddvvvvvvvvvvvvvdddddddd	chr12:54730934-54731185(+)$1	251	97	133	24.5943
======bb[ffffffwwwwwwwwwwwwwwffffffb	chr9:97847423-97847692(+)$1	269	92	128	23.8315
eeee[cccgggggggtttttttttttggggggg]cc	chr1:94312708-94313008(+)$1	300	248	284	26.4738
iiii[dddd[ddddvvvvvvvvvvvvvdddd]dddd	chr12:46752325-46752581(-)$1	256	56	92	25.8950
dddd[ccc[ffffffvvvvvvvvvvvvvffffff]c	chr17:57918991-57919221(+)$1	230	28	64	24.9905
GG:ggggggg[ddddtttttttttttddddgggggg	chr1:42645827-42646076(-)$1	249	95	131	25.2222
eccceeeeeffffffwwwwwwwwwwwwwwffffffD	chr22:24497950-24498240(+)$1	290	47	83	21.4383
ffff"""bbddddvvvvvvvvvvvvvdddd]bbfff	chr22:50870765-50871035(+)$1	270	41	77	24.8665
============[cccssssssssssccc]======	chr9:111808369-111808601(-)$1	232	121	157	20.8827
"ggggggggggggggtttttttttttggggggg]gg	chr19:42758777-42759031(-)$1	254	114	150	26.8862
dddd[bbccccccvvvvvvvvvvvvvccc]ccc444	chrX:53583866-53584110(-)$1	244	36	72	25.7779
ffffffccc[cccwwwwwwwwwwwwwwccc22ccc]	chrX:20284221-20284460(-)$1	239	157	193	24.5319
::ffffff[ddddvvvvvvvvvvvvvdddd333fff	chr17:28443848-28444132(+)$1	284	69	105	23.5298
iiiiiiiieeeee[ayyyyyyyyyyyyyyyya]eee	chr17:27718053-27718314(+)$1	261	199	235	22.4287
dddd"""ggggggguuuuuuuuuuuuggggggg333	chr17:57918733-57918962(+)$1	229	56	92	26.9467
{BBeeeee!!dddduuuuuuuuuuuudddd22eeee	chr22:20074299-20074546(+)$1	247	119	155	23.0168
::==========wwwwwwwwwwwwww==========	chr3:160122246-160122487(+)$1	241	22	58	24.2259
""bb[hhhhhhhhwwwwwwwwwwwwwwhhhhhhhh]	chr12:62997497-62997767(+)$1	270	170	206	23.2049
===========[ccctttttttttttccc=======	chr13:92003240-92003471(+)$1	231	93	129	28.5484
========[a[dddduuuuuuuuuuuudddda]===	chr9:4850143-4850369(+)$1	226	172	208	27.8823
dddd[affffffbbuuuuuuuuuuuubb]ffffff]	chr19:13946668-13946976(-)$1	308	158	194	24.2248
"""ggggggg[ddddtttttttttttddddgggggg	chr7:130561406-130561610(-)$1	204	53	89	27.3723
bffffff!!ddddvvvvvvvvvvvvvddddffffff	chr13:92003396-92003629(+)$1	233	74	110	25.0639
[ffffff!!ffffffvvvvvvvvvvvvvffffffff	chr7:130562126-130562358(-)$1	232	79	115	24.3659
====[bb[eeeeevvvvvvvvvvvvveeeeebb]==	chrX:73506793-73507018(-)$1	225	7	43	25.9351
fiiiiiiiii!!ccctttttttttttccc22iiiii	chr13:92003587-92003802(+)$1	215	132	168	27.4651
iiiiiiii!!eeeeevvvvvvvvvvvvveeeee]ii	chr9:97848151-97848358(+)$1	207	164	200	26.7642
===========[ccctttttttttttccc=======	chr13:92003271-92003488(+)$1	217	62	98	28.5484
bb]cccbb!!eeeeettttttttttteeeee22bb:	chr6:167358204-167358472(-)$1	268	181	217	23.3203
ddd[a[bb!!eeeeeuuuuuuuuuuuueeeee22bb	chr22:41487714-41487983(+)$1	269	150	186	24.6322
"""ggggggg[ddddtttttttttttddddgggggg	chr7:130561410-130561632(-)$1	222	75	111	27.3723
dddd"""ggggggguuuuuuuuuuuuggggggg333	chr17:57918762-57918989(+)$1	227	27	63	26.9467

#otherMatches

#Seq PSSM
gucugAAUCUCCCUCCACCCCUAGCCAGAGGUGAGA	chr22:24498040-24498304(+)$1	264	24	60	25.0160
GGCGCCGACCCCCUCGGAGGCACAGAGAGGACGGCC	chr2:219265220-219265472(+)$1	252	183	219	24.5512
AAAGCCUGAAUAUUUGAAAUAACCGAAAAGCAUUUA	chrX:73507087-73507318(-)$1	231	4	40	25.5026
CUCCCGUUGAGUGGGCACCCGAGAAGCCAUCGGGAA	chr3:49057495-49057698(-)$1	203	57	93	26.1524
AAUGUAUACAUCACACCCUUCUUCCCUGAUGCUCCC	chr9:111808519-111808807(-)$1	288	176	212	25.3161
AGGCUCCUGCUUCCUGUUUCUGCCCAAGGGGGCGUG	chr16:75278083-75278353(-)$1	270	68	104	23.8042
GGCAGCUGAGAGCCCCUCCCUGGCCUGGGCCCCUCU	chr17:19248020-19248282(-)$1	262	172	208	25.9589
CCUCAGAAGCACGGCGGUGGGGGAGGGGGCGGCUCG	chr17:29058857-29059131(+)$1	274	52	88	23.2841
CAUGGUACCGAUGCUGUAUAUCUGAAAGGUACAGUA	chr9:4850243-4850468(+)$1	225	72	108	27.8823
CUCCCGUUGAGUGGGCACCCGAGAAGCCAUCGGGAA	chr3:49057560-49057798(-)$1	238	157	193	26.1524
CUGUCUGGUGGCACUUAGAGUCUUUUGUGCCAUAAU	chr17:57918695-57918906(+)$1	211	94	130	26.9467
GCUGGCCACCUGAGGCCUUGUCCCCAUCUCAGGUGA	chr17:80054602-80054856(-)$1	254	72	108	26.5881
ggacgccacagugaacaaaaccuauagcagucAUCC	chr16:3766825-3767165(-)$1	340	269	305	22.7041
GGAAGUAUUGAUGUUUCUGCCAGUUUAGCGUCAACA	chrX:139006282-139006555(-)$1	273	187	223	23.7007
CUGCCUUUCCCAUCACACGCCUCCUUCGAAGGGUGG	chr11:2156310-2156555(-)$1	245	139	175	25.2775
GGCCUGGGGCCUCUUACCAUCUUCUUGGGGGCCCCU	chr1:205418500-205418747(-)$1	247	196	232	27.2111
UGGGCCACAGAGUGGACUUCUCAUUACCACUGUCAC	chrX:49773236-49773465(+)$1	229	100	136	26.4314
CUGGCAUGCUGAUUUGUGACUUAAGAUUAAAAUCAC	chr9:97847295-97847585(+)$1	290	220	256	23.8315
CUUGCUUGCUGGGAUUACAGCUUUUCAGUGCCAGUG	chr9:111808314-111808569(-)$1	255	89	125	20.8827
GAAAAGGUUUCUUCAAUUUUAAUACCCAUGAAGGCC	chr9:96939289-96939538(+)$1	249	67	103	25.9496
CUCGGGCCCGCGGCGCGAGAACAAAggccgggcggg	chr1:1821790-1822033(-)$1	243	140	176	23.7818
CCUUUUGGGCUUUCUGGUUUUAUUUUAAGCCCAAAG	chr1:71533224-71533451(-)$1	227	77	113	22.6103
UCUCCCAUCUGGGCACCAGUCAGCUACCCUGGUGGG	chr11:57408651-57408884(+)$1	233	146	182	25.1480
UUAUACACUCAGGCUGUGGCUCUCUGAAAGUCAGUG	chr12:54730934-54731185(+)$1	251	97	133	24.5943
CUGGCAUGCUGAUUUGUGACUUAAGAUUAAAAUCAC	chr9:97847423-97847692(+)$1	269	92	128	23.8315
GGCGACCACUGCGGGGAGACCGAGAGCCUGCGGCUG	chr1:94312708-94313008(+)$1	300	248	284	26.4738
CUAUGUACAUAUAUUGUCUGUCCAUAUGUAUUUGUA	chr12:46752325-46752581(-)$1	256	56	92	25.8950
AUUUUAGAUAGAUUAACAUUAACCAACAUAAUUUUU	chr17:57918991-57919221(+)$1	230	28	64	24.9905
UCCUCUGUGUUCACUUGACAUUACUUGGUGGCACAG	chr1:42645827-42646076(-)$1	249	95	131	25.2222
gcugagggcagguaggcacucauccaaaacugccug	chr22:24497950-24498240(+)$1	290	47	83	21.4383
GCAGAGACGCACCUCACCCAAGCCCUGGUGACGCUG	chr22:50870765-50871035(+)$1	270	41	77	24.8665
CUUGCUUGCUGGGAUUACAGCUUUUCAGUGCCAGUG	chr9:111808369-111808601(-)$1	232	121	157	20.8827
GCUGCGGGUCUUGGUCCUGUAUCCCUACCGGGACCC	chr19:42758777-42759031(-)$1	254	114	150	26.8862
GAGGUCAUGUGUCUUGUUCAUUUCCUGACUGCAACU	chrX:53583866-53584110(-)$1	244	36	72	25.7779
CUUUGGGAGAUGAGGGAGGGGUAGGGAUCGGGUUCA	chrX:20284221-20284460(-)$1	239	157	193	24.5319
GAGAAACUACGGCGACUGUAUCUUUGGCCGAGGAGU	chr17:28443848-28444132(+)$1	284	69	105	23.5298
AGGGUCACCGGAAGGGGUGGUGGAAGGGGGAUGUUU	chr17:27718053-27718314(+)$1	261	199	235	22.4287
CUGUCUGGUGGCACUUAGAGUCUUUUGUGCCAUAAU	chr17:57918733-57918962(+)$1	229	56	92	26.9467
GGCCCUGCAUCCCUGAUCUAGCGCGUGGGGCAGCAG	chr22:20074299-20074546(+)$1	247	119	155	23.0168
CAUAAUAGAUUUUUAAUUUUACAGGUAAGUUUAUUA	chr3:160122246-160122487(+)$1	241	22	58	24.2259
AACCGUUAGUUUCACAUUUUCCUAGAAGGAAUUGAG	chr12:62997497-62997767(+)$1	270	170	206	23.2049
UUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUU	chr13:92003240-92003471(+)$1	231	93	129	28.5484
CAUGGUACCGAUGCUGUAUAUCUGAAAGGUACAGUA	chr9:4850143-4850369(+)$1	226	172	208	27.8823
GGCUUGGCCCCUCCUCUCCCAAGCCUGGCAGGGGCA	chr19:13946668-13946976(-)$1	308	158	194	24.2248
UUUUGGUGUUCAGAGUCAAUAUAAUUUUCUAGCACC	chr7:130561406-130561610(-)$1	204	53	89	27.3723
GUUUGCAUCCAGCUGUGUGAUAUUCUGCUGUGCAAA	chr13:92003396-92003629(+)$1	233	74	110	25.0639
UAUGGUGGUUUAGAUUUAAAUAGUGAUUGUCUAGCA	chr7:130562126-130562358(-)$1	232	79	115	24.3659
guuuauuagaugaauaaauGAAUGACUCAUCAGCAA	chrX:73506793-73507018(-)$1	225	7	43	25.9351
AUACAUGAAAUAUUAAAGAAAAUGUGUAACUUUUUG	chr13:92003587-92003802(+)$1	215	132	168	27.4651
UGAGCUGAUAUCAGUUCUCAUUUUACACACUGGCUC	chr9:97848151-97848358(+)$1	207	164	200	26.7642
UUAUAGUGCAGGUAGUGUUUAGUUAUCUACUGCAUU	chr13:92003271-92003488(+)$1	217	62	98	28.5484
GUGCCUGCAGCUGGGAAAGGCGGAAACCCAGGAGUG	chr6:167358204-167358472(-)$1	268	181	217	23.3203
UGAGUGCUAACUGCGGGAGCCAGAGAGUGCGGAGGG	chr22:41487714-41487983(+)$1	269	150	186	24.6322
UUUUGGUGUUCAGAGUCAAUAUAAUUUUCUAGCACC	chr7:130561410-130561632(-)$1	222	75	111	27.3723
CUGUCUGGUGGCACUUAGAGUCUUUUGUGCCAUAAU	chr17:57918762-57918989(+)$1	227	27	63	26.9467

#DB
(((....((((((((............)))).))))	chr22:24498040-24498304(+)$1	1	24	60	25.0160
((.((((.((.((((...........))))..)).)	chr2:219265220-219265472(+)$1	1	183	219	24.5512
((((..(((((.(((............))).)))))	chrX:73507087-73507318(-)$1	1	4	40	25.5026
.(((((....((((............))))))))).	chr3:49057495-49057698(-)$1	1	57	93	26.1524
((((....(((((.............)))))....)	chr9:111808519-111808807(-)$1	1	176	212	25.3161
.((((..((((((((...........)))))))).)	chr16:75278083-75278353(-)$1	1	68	104	23.8042
(((.((.(((.((((...........))))..))).	chr17:19248020-19248282(-)$1	1	172	208	25.9589
((((.((.((.((.(............).)))))))	chr17:29058857-29059131(+)$1	1	52	88	23.2841
((((((((.(.((((............))))).)))	chr9:4850243-4850468(+)$1	1	72	108	27.8823
.(((((....((((............))))))))).	chr3:49057560-49057798(-)$1	1	157	193	26.1524
((((...(((((((............)))))))...	chr17:57918695-57918906(+)$1	1	94	130	26.9467
((.((.(((((((((...........))))))))).	chr17:80054602-80054856(-)$1	1	72	108	26.5881
((((.((...((((................))))..	chr16:3766825-3767165(-)$1	1	269	305	22.7041
(.((((.((((((((...........)))))))).)	chrX:139006282-139006555(-)$1	1	187	223	23.7007
((((((..(((.((.............)).))).))	chr11:2156310-2156555(-)$1	1	139	175	25.2775
..((.(((((((((............))))))))).	chr1:205418500-205418747(-)$1	1	196	232	27.2111
((((..(((..((((...........)))))))..)	chrX:49773236-49773465(+)$1	1	100	136	26.4314
((((((((.((((((..............)))))))	chr9:97847295-97847585(+)$1	1	220	256	23.8315
((((((((((((.(((..........))).))))))	chr9:111808314-111808569(-)$1	1	89	125	20.8827
(((..(((..(((((.............))))))))	chr9:96939289-96939538(+)$1	1	67	103	25.9496
)))(((((((((((............)))..)))))	chr1:1821790-1822033(-)$1	1	140	176	23.7818
(((((.((((((..............))))))))))	chr1:71533224-71533451(-)$1	1	77	113	22.6103
..(((((((.(((.............))).))))))	chr11:57408651-57408884(+)$1	1	146	182	25.1480
(.((.((((..((((.............))))))))	chr12:54730934-54731185(+)$1	1	97	133	24.5943
((((((((.((((((..............)))))))	chr9:97847423-97847692(+)$1	1	92	128	23.8315
((((.((((((((((...........))))))).))	chr1:94312708-94313008(+)$1	1	248	284	26.4738
((((.((((.((((.............)))).))))	chr12:46752325-46752581(-)$1	1	56	92	25.8950
((((.(((.((((((.............)))))).)	chr17:57918991-57919221(+)$1	1	28	64	24.9905
((.(((((((.((((...........))))))))))	chr1:42645827-42646076(-)$1	1	95	131	25.2222
)))))))))((((((..............))))))(	chr22:24497950-24498240(+)$1	1	47	83	21.4383
((((...((((((.............)))).)))))	chr22:50870765-50871035(+)$1	1	41	77	24.8665
((((((((((((.(((..........))).))))))	chr9:111808369-111808601(-)$1	1	121	157	20.8827
.((((((((((((((...........))))))).))	chr19:42758777-42759031(-)$1	1	114	150	26.8862
((((.((((((((.............))).)))...	chrX:53583866-53584110(-)$1	1	36	72	25.7779
(((((((((.(((..............)))..))).	chrX:20284221-20284460(-)$1	1	157	193	24.5319
..((((((.((((.............))))...)))	chr17:28443848-28444132(+)$1	1	69	105	23.5298
(((((((((((((.(................).)))	chr17:27718053-27718314(+)$1	1	199	235	22.4287
((((...(((((((............)))))))...	chr17:57918733-57918962(+)$1	1	56	92	26.9467
.(((((((..((((............))))..))))	chr22:20074299-20074546(+)$1	1	119	155	23.0168
..((((((((((..............))))))))))	chr3:160122246-160122487(+)$1	1	22	58	24.2259
..((.((((((((..............)))))))).	chr12:62997497-62997767(+)$1	1	170	206	23.2049
(((((((((((.(((...........))))))))))	chr13:92003240-92003471(+)$1	1	93	129	28.5484
((((((((.(.((((............))))).)))	chr9:4850143-4850369(+)$1	1	172	208	27.8823
((((.(((((((((............)).)))))).	chr19:13946668-13946976(-)$1	1	158	194	24.2248
...(((((((.((((...........))))))))))	chr7:130561406-130561610(-)$1	1	53	89	27.3723
(((((((..((((.............))))))))))	chr13:92003396-92003629(+)$1	1	74	110	25.0639
.((((((..((((((.............))))))))	chr7:130562126-130562358(-)$1	1	79	115	24.3659
((((.((.(((((.............))))))).))	chrX:73506793-73507018(-)$1	1	7	43	25.9351
((((((((((..(((...........)))..)))))	chr13:92003587-92003802(+)$1	1	132	168	27.4651
((((((((..(((((.............))))).))	chr9:97848151-97848358(+)$1	1	164	200	26.7642
(((((((((((.(((...........))))))))))	chr13:92003271-92003488(+)$1	1	62	98	28.5484
)).)))((..(((((...........)))))..)).	chr6:167358204-167358472(-)$1	1	181	217	23.3203
(((.(.((..(((((............)))))..))	chr22:41487714-41487983(+)$1	1	150	186	24.6322
...(((((((.((((...........))))))))))	chr7:130561410-130561632(-)$1	1	75	111	27.3723
((((...(((((((............)))))))...	chr17:57918762-57918989(+)$1	1	27	63	26.9467

#PSSM
= : 0.21	d : 0.14	e : 0.12	" : 0.09	f : 0.07	[ : 0.05	: : 0.05	i : 0.05	c : 0.03	g : 0.03	b : 0.03	# : 0.01	h : 0.01	G : 0.01	{ : 0.01	
= : 0.18	d : 0.16	e : 0.14	f : 0.09	" : 0.07	i : 0.07	c : 0.05	g : 0.05	: : 0.05	[ : 0.03	h : 0.01	G : 0.01	B : 0.01	b : 0.01	
= : 0.20	d : 0.18	e : 0.14	f : 0.09	i : 0.07	c : 0.05	b : 0.05	g : 0.05	[ : 0.03	" : 0.03	h : 0.01	: : 0.01	B : 0.01	] : 0.01	
= : 0.20	d : 0.18	e : 0.14	g : 0.09	f : 0.09	b : 0.07	i : 0.07	c : 0.05	[ : 0.03	# : 0.01	! : 0.01	h : 0.01	
[ : 0.20	= : 0.16	e : 0.09	g : 0.09	" : 0.07	f : 0.07	d : 0.05	! : 0.05	i : 0.05	# : 0.03	b : 0.03	c : 0.03	h : 0.01	a : 0.01	
= : 0.16	b : 0.09	c : 0.09	g : 0.09	d : 0.07	e : 0.07	" : 0.07	i : 0.07	f : 0.07	! : 0.05	[ : 0.05	# : 0.03	h : 0.03	a : 0.01	
b : 0.14	= : 0.12	i : 0.09	c : 0.09	f : 0.09	g : 0.09	# : 0.07	" : 0.07	d : 0.05	e : 0.05	! : 0.03	[ : 0.03	h : 0.03	
g : 0.14	c : 0.12	= : 0.12	i : 0.09	b : 0.09	h : 0.07	d : 0.05	[ : 0.05	e : 0.05	# : 0.05	! : 0.05	f : 0.05	" : 0.01	
g : 0.16	! : 0.12	[ : 0.10	e : 0.09	c : 0.09	= : 0.09	h : 0.07	d : 0.05	b : 0.05	i : 0.05	# : 0.03	f : 0.03	" : 0.01	
g : 0.14	! : 0.12	f : 0.12	= : 0.09	d : 0.07	e : 0.07	h : 0.07	c : 0.05	i : 0.05	[ : 0.05	b : 0.03	# : 0.03	a : 0.03	" : 0.01	
d : 0.16	[ : 0.14	e : 0.14	f : 0.12	g : 0.09	= : 0.09	h : 0.07	c : 0.07	! : 0.05	i : 0.03	
d : 0.32	e : 0.12	f : 0.12	g : 0.09	[ : 0.07	c : 0.07	h : 0.05	= : 0.05	i : 0.03	b : 0.01	! : 0.01	
d : 0.32	c : 0.14	e : 0.12	g : 0.09	f : 0.09	h : 0.05	b : 0.05	i : 0.03	[ : 0.03	w : 0.03	
d : 0.27	c : 0.12	v : 0.12	g : 0.09	f : 0.09	e : 0.07	w : 0.07	h : 0.03	[ : 0.03	i : 0.03	b : 0.03	
d : 0.18	u : 0.16	v : 0.16	c : 0.10	f : 0.09	e : 0.07	w : 0.07	h : 0.03	a : 0.03	g : 0.03	i : 0.01	y : 0.01	
u : 0.27	t : 0.27	v : 0.25	w : 0.12	y : 0.03	c : 0.03	
u : 0.27	t : 0.27	v : 0.25	w : 0.12	y : 0.03	s : 0.03	
u : 0.27	t : 0.27	v : 0.25	w : 0.12	y : 0.03	s : 0.03	
u : 0.27	t : 0.27	v : 0.25	w : 0.12	y : 0.03	s : 0.03	
u : 0.27	t : 0.27	v : 0.25	w : 0.12	y : 0.03	s : 0.03	
u : 0.27	t : 0.27	v : 0.25	w : 0.12	y : 0.03	s : 0.03	
u : 0.27	t : 0.27	v : 0.25	w : 0.12	y : 0.03	s : 0.03	
u : 0.27	t : 0.27	v : 0.25	w : 0.12	y : 0.03	s : 0.03	
u : 0.27	t : 0.27	v : 0.25	w : 0.12	y : 0.03	s : 0.03	
u : 0.27	t : 0.27	v : 0.25	w : 0.12	y : 0.03	s : 0.03	
u : 0.27	t : 0.27	v : 0.25	w : 0.12	y : 0.03	s : 0.03	
d : 0.21	c : 0.14	v : 0.12	u : 0.10	g : 0.09	w : 0.09	e : 0.05	h : 0.03	i : 0.03	y : 0.03	f : 0.01	= : 0.01	b : 0.01	
d : 0.29	c : 0.18	g : 0.09	v : 0.09	e : 0.07	h : 0.05	w : 0.05	i : 0.03	y : 0.03	b : 0.03	a : 0.01	f : 0.01	= : 0.01	
d : 0.30	c : 0.18	e : 0.10	g : 0.09	h : 0.05	w : 0.05	f : 0.05	] : 0.03	i : 0.03	y : 0.03	b : 0.01	= : 0.01	
d : 0.30	f : 0.12	e : 0.10	g : 0.09	] : 0.09	h : 0.05	= : 0.05	c : 0.03	i : 0.03	y : 0.03	2 : 0.03	b : 0.01	
g : 0.16	e : 0.14	f : 0.14	d : 0.10	2 : 0.10	= : 0.09	h : 0.05	c : 0.05	] : 0.03	i : 0.03	b : 0.01	3 : 0.01	y : 0.01	
g : 0.16	f : 0.14	e : 0.10	2 : 0.09	= : 0.09	h : 0.07	b : 0.05	a : 0.05	i : 0.05	c : 0.05	] : 0.03	d : 0.03	4 : 0.01	3 : 0.01	
g : 0.16	e : 0.12	f : 0.12	c : 0.09	= : 0.09	d : 0.07	b : 0.07	h : 0.07	] : 0.05	i : 0.05	2 : 0.03	4 : 0.01	3 : 0.01	
f : 0.16	= : 0.12	e : 0.10	] : 0.09	d : 0.07	h : 0.07	g : 0.07	b : 0.05	c : 0.05	3 : 0.05	i : 0.05	4 : 0.03	2 : 0.03	
= : 0.14	f : 0.14	e : 0.10	c : 0.09	g : 0.09	] : 0.07	i : 0.07	d : 0.05	b : 0.05	3 : 0.05	4 : 0.03	2 : 0.03	h : 0.03	
] : 0.14	= : 0.14	e : 0.12	d : 0.10	g : 0.09	c : 0.07	f : 0.07	3 : 0.05	b : 0.05	i : 0.03	2 : 0.01	h : 0.01	D : 0.01	4 : 0.01	: : 0.01	

#score	1381.8720207206345
#seq	55
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_transcript_m1_run1.txt

#BEAR
d####==========[bboooooobb]==========333	chr11:800954-801196(-)$1	242	124	164	18.4463
dddd[ccc[dddd[cccooooooccc]dddd]ccc333dd	chr14:102510131-102510344(+)$1	213	18	58	16.2292
cccbb[bb[eeeee[bboooooobbeeeee]bbbb]ccc]	chr14:74193459-74193790(-)$1	331	187	227	13.5443
%%bb[iiiiiiiiirrrrrrrrriiiiiiiiibb333ddd	chr16:70602811-70603066(+)$1	255	170	210	11.5859
]ccc=============rrrrrrrrr=============:	chr5:95087863-95088192(+)$1	329	46	86	14.0170
ggg####bb"""a[cccooooooccc22a333bb333ggg	chr19:13216080-13216385(-)$1	305	162	202	18.4603
eee$$$$$a!!ffffffooooooffffff22a333eeeee	chr7:1521002-1521260(-)$1	258	57	97	14.1218
"""iiiiiiiii[eeeeellleeeee]iiiiiiiii>>>>	chr8:121824467-121824755(-)$1	288	180	220	12.4595
ffeeeee$$$$$eeeeeooooooeeeee333eeeee]fff	chr14:24112359-24112581(+)$1	222	163	203	13.2598
gggeeeee####ccc[bboooooobb]ccceeeee]gggg	chr9:130707062-130707309(-)$1	247	199	239	14.6629
ddd[ffffff"""ddddoooooodddd333ffffffdddd	chr2:178080151-178080363(+)$1	212	59	99	13.6339
fffff!!dddd"""cccooooooccc22dddd22ffffff	chr16:84796563-84796833(+)$1	270	138	178	15.0288
FFFa[gggggggbb!!aooooooa22bb]ggggggg]a:i	chr11:121437524-121437809(+)$1	285	5	45	13.6656
cccccc[ccc[bb[cccooooooccc22bb]ccc]ccc]c	chr16:29989466-29989701(+)$1	235	94	134	16.7254
iiiiiii[eeeeebbrrrrrrrrrbb]eeeee333iiiii	chr2:96932918-96933209(+)$1	291	134	174	12.5070
E:::gggggggdddd[aooooooa]dddd333gggggggf	chrX:38663806-38664065(+)$1	259	41	81	12.5069
eee####ccc[ffffffooooooffffff]ccc4444eee	chr2:96991348-96991653(+)$1	305	228	268	15.2371
ff"""eeeee[ffffffooooooffffffeeeee333fff	chr12:49438132-49438375(-)$1	243	47	87	15.0175
ee22eeeeeccc!!cccooooooccc]ccc==========	chr1:16934855-16935171(-)$1	316	258	298	17.1163
g[bbggggggg"""cccooooooccc]ggggggg333bb3	chr19:18266119-18266406(+)$1	287	178	218	18.6064
c"""ccc==========nnnnn==========]cccccc]	chr1:173833081-173833336(-)$1	255	93	133	15.2239
a####ccceeeee[cccooooooccc]eeeee]ccc22a]	chr16:16465314-16465588(+)$1	274	120	160	17.3473
dd[ccc[gggggggcccooooooccc4444ggggggg]cc	chr17:36878423-36878680(+)$1	257	7	47	17.9196
b[ggggggg[ccc!!ccclllccc22cccggggggg]bb4	chr9:71835696-71835943(+)$1	247	55	95	12.6721
dd[dddd!!ccceeeeeooooooeeeee]cccdddd]ddd	chr15:91503436-91503714(+)$1	278	101	141	13.1029
=====ccc%%%%%%cccooooooccc]ccc]=========	chr20:61458495-61458743(+)$1	248	166	206	15.9427
hh!!cccgggggggcccooooooccc4444ggggggg]cc	chr16:9186254-9186494(+)$1	240	11	51	17.7514
ffdddd!!dddd####aooooooa4444dddd4444dddd	chr17:34883859-34884126(-)$1	267	63	103	14.9808
gggggggbb!!bb!!bboooooobb22bb333bb]ggggg	chr9:139937377-139937640(-)$1	263	192	232	15.3974
$dddd!!bb"""a!!bboooooobb22a]bb22ddddfff	chr3:101573388-101573632(+)$1	244	25	65	13.9103
b[============a[aooooooa]a]============]	chr20:47895506-47895734(+)$1	228	115	155	20.2088
!!bbccc!!ccc[abbaooooooa]bb]a]ccc]ccc]bb	chr21:47977354-47977652(+)$1	298	238	278	15.6873
$$$ccc$$$$$ffffffooooooffffffccc22eeeee2	chr5:110837640-110837889(-)$1	249	123	163	13.2990
eeee:===========cccooooooccc]===========	chr2:97530268-97530490(-)$1	222	181	221	15.1563
!!ccc[eeeee####cccooooooccceeeee333ccc22	chr14:54418386-54418654(-)$1	268	141	181	16.0266
####ccc[bb[ccccccooooooccc]ccc]bb]ccc666	chr16:8895497-8895747(+)$1	250	151	191	15.9488
c[ccc[ggggggg[bboooooobb]gggggggccccccee	chr14:64906913-64907159(+)$1	246	61	101	15.4998
ooeeeeegggggggcccooooooccc::==========''	chr12:1881874-1882150(+)$1	276	175	215	13.9887
hhhhhh!!ffffffcccooooooccc333ffffffhhhhh	chr9:139757146-139757419(-)$1	273	52	92	14.0299
ccc####dddd[ddddoooooodddd]dddd333ccc333	chr19:2235873-2236150(-)$1	277	67	107	14.6855
b[ggggggg"""ddddooooooddddggggggg]bb22ee	chr7:5410404-5410655(-)$1	251	67	107	14.2579
""ccc[eeeee!!ccccccmmmmccc]ccceeeee333cc	chr3:48668326-48668573(-)$1	247	86	126	12.9339
eeee::===========oooooo===========cccooo	chr2:96954735-96954951(-)$1	216	71	111	15.2639
bb[ccc[eeeeea[cccooooooccc]a]eeeee]ccc]b	chr9:71864281-71864572(+)$1	291	96	136	16.6089
bb####eeeee"""bboooooobb333eeeee]bb]ccc4	chr4:1741590-1741865(+)$1	275	16	56	15.0394
cc"""ccc"""dddd[aooooooa]dddd22ccc22ccc]	chr19:39926258-39926498(-)$1	240	73	113	16.1321
D==========a[abboooooobb]a]a]==========:	chr21:46893715-46893968(+)$1	253	35	75	16.2276
iiiiiiiii[ccc[ddddmmmmdddd]ccciiiiiiiii:	chr20:34317336-34317550(-)$1	214	21	61	12.0510
============"""cccnnnnnccc4444==========	chr2:219514982-219515234(-)$1	252	180	220	16.5014
""ccc[dddd[ccccccooooooccc22cccdddd]ccc]	chr16:89977382-89977665(+)$1	283	13	53	16.4655
======="""bb[bb[bbnnnnnbbbb]bb22========	chr2:242169248-242169524(-)$1	276	142	182	11.9555
c####ggggggg####bbmmmmbb22ggggggg4444ccc	chr22:19969025-19969277(-)$1	252	11	51	12.6834

#otherMatches

#Seq PSSM
CUGCAGCCACCUGGGAUGACAUCACAGCUCAGGUGGUCCU	chr11:800954-801196(-)$1	242	124	164	18.4463
GCACUGUUCUUGGCGAAGUGCUGUUUUCUAAUGACUCUGU	chr14:102510131-102510344(+)$1	213	18	58	16.2292
UCCCCACAAGGCUGACUUGGUGUGGCAGCCAUGGGAGGAC	chr14:74193459-74193790(-)$1	331	187	227	13.5443
GAGGAUCCUACAGGAAACAAAGCCCUGUGGGACCGUGGCU	chr16:70602811-70603066(+)$1	255	170	210	11.5859
GGAUCUUCAAUUAAAAUUUGAUUCCUGUUUUAGUUGGAGU	chr5:95087863-95088192(+)$1	329	46	86	14.0170
UCCCCUCGCACAGGGGCAAGGCGGCCGACGAAGCUAUGGA	chr19:13216080-13216385(-)$1	305	162	202	18.4603
CAGCCCCAGGUCUCGGGUGGGGUCCCGAGUGCGCAUUGCC	chr7:1521002-1521260(-)$1	258	57	97	14.1218
AAGCUGUCCCCGCGGCGUCGUGCGCUCUGGGGACAGAGGA	chr8:121824467-121824755(-)$1	288	180	220	12.4595
CAGAAGAGGUCUGGGAUCUCCACAUCCCUCAUCUUCUUGU	chr14:24112359-24112581(+)$1	222	163	203	13.2598
AUCGUGGAGAAGAUCGUGCAGAGCCAGGAUUUCACAGAUG	chr9:130707062-130707309(-)$1	247	199	239	14.6629
UGCAUCUUAAUUCAUCUACUGUAAGGUAACUUAAGAGUAU	chr2:178080151-178080363(+)$1	212	59	99	13.6339
AUGGUCCACUUGCCGCAGAGUUGUGCAAGAGUUCGCUGUA	chr16:84796563-84796833(+)$1	270	138	178	15.0288
GAGAGCUUCUCGCUGUCCUUUCCGUAAGACGAGGAGGUUG	chr11:121437524-121437809(+)$1	285	5	45	13.6656
CUGACCCCCUAGAAAUGGCAAGACAUCAUCAAGGAGGUGC	chr16:29989466-29989701(+)$1	235	94	134	16.7254
CUUUAGGUGACAGCUGGAUCUGCAAGUCUGUCCUUUCUGA	chr2:96932918-96933209(+)$1	291	134	174	12.5070
GAGAAGGGGGUGCGCGCGGGCAAGGGCGCCAGGCCCCCUA	chrX:38663806-38664065(+)$1	259	41	81	12.5069
CAUGAAUGUUGGUAAGCGCGGUAGCUUGUGAAUUAGGGUG	chr2:96991348-96991653(+)$1	305	228	268	15.2371
AUCUCUUCUGUCACCAUACGCAGGUGGUGUGGAGCACAUG	chr12:49438132-49438375(-)$1	243	47	87	15.0175
CUAAACAUUGCAGGGCCUugcuuggcaugcaacagauauu	chr1:16934855-16935171(-)$1	316	258	298	17.1163
CAGCCUGCACCCUUGGCUCCCUUGUCUGGUGCAGCCAGCA	chr19:18266119-18266406(+)$1	287	178	218	18.6064
CUAAAAGucuugucuuauuuuuugagacagggucuugccu	chr1:173833081-173833336(-)$1	255	93	133	15.2239
CCGUCGGUGCUGUGGUCACCCUGGACAGCAGCAACCCUGU	chr16:16465314-16465588(+)$1	274	120	160	17.3473
AGCCAGGCUGGCGGGGCCCCCACGCUGCAGCUGCCAGGCU	chr17:36878423-36878680(+)$1	257	7	47	17.9196
ACAUUCAGUUGUGAUUGUCCUGCGUCCACACUGAGUUUGU	chr9:71835696-71835943(+)$1	247	55	95	12.6721
UCAUUAUUAUCAUUCUGAAGCCACAGAACUGAAUGAAGAU	chr15:91503436-91503714(+)$1	278	101	141	13.1029
GUUGGUUCCCUGGGUCCUUAUGUGGAAGAACCCAAUUUCC	chr20:61458495-61458743(+)$1	248	166	206	15.9427
UGCCGCCCCCUCCCCGCAAGAUGGCGCCGCGGGAGGGAGG	chr16:9186254-9186494(+)$1	240	11	51	17.7514
cuggccUCACCUUCACGUUAUCUCUUCCAGGUCAAUGGCC	chr17:34883859-34884126(-)$1	267	63	103	14.9808
GGGCCCUGCCUUCAGCCCUUCCAGGAGGACCAGCAAGGGC	chr9:139937377-139937640(-)$1	263	192	232	15.3974
UUCCCCAGGUUCCUUCAUAUUGCUGUUGCCCAAGGGAGAA	chr3:101573388-101573632(+)$1	244	25	65	13.9103
UUUAUUUGUUGGUUCACAGGUUAGAGCAGCCAGCGGGUAC	chr20:47895506-47895734(+)$1	228	115	155	20.2088
GCGUCACCUUCUGCUCCUACUCUGUGAUGGAGAUGUGCAC	chr21:47977354-47977652(+)$1	298	238	278	15.6873
UAGAUGACCUUGUCUAUAGUAUAAUAGACCAUAUACGCCC	chr5:110837640-110837889(-)$1	249	123	163	13.2990
UGGCACCUGCCCCUUUCAGAGCUGCCUGUGAAGGGGCAGG	chr2:97530268-97530490(-)$1	222	181	221	15.1563
AGUGAAAGCCCUGGGGAAGAAGAGUUCGGGUUACAUCAAA	chr14:54418386-54418654(-)$1	268	141	181	16.0266
AAUUUAGAAAAUUACCAAAGAAAUGGAUGACUUCCUACAA	chr16:8895497-8895747(+)$1	250	151	191	15.9488
CGAAGAUCUGGUGGGUACCCAGACACGCCAGGCUUGGCGA	chr14:64906913-64907159(+)$1	246	61	101	15.4998
GAUGAGGGCUUUAUGGGCAUGUCCCCUCUCUUACAAGCCC	chr12:1881874-1882150(+)$1	276	175	215	13.9887
CGGGCCAUUGGUGAGUGUCCCUCCACCCUUCGCCGGGUCC	chr9:139757146-139757419(-)$1	273	52	92	14.0299
ccggaggccggaguccgggucggggcgccggggacgggag	chr19:2235873-2236150(-)$1	277	67	107	14.6855
UGCGCAGAGCCCUCUGAGUGUCCAGACUUUGUGGAGGGGC	chr7:5410404-5410655(-)$1	251	67	107	14.2579
UUGCCAUCUCACUGGGGAAGAUCUUCGCCCUGAGGCACGG	chr3:48668326-48668573(-)$1	247	86	126	12.9339
CUUGACCUUUUCCUCCUUGUGGCAGGAGGAGAAGCUGGAG	chr2:96954735-96954951(-)$1	216	71	111	15.2639
GCAUUCAAGCCAGAGCCGCCCAAGGUACGUGGCUGGGAAG	chr9:71864281-71864572(+)$1	291	96	136	16.6089
guccccguccccauccccaCCUGGCCUGGGACCGCUGGGC	chr4:1741590-1741865(+)$1	275	16	56	15.0394
GUGGGCAGGAAUCUAGGGGGUAACAUGGGAGCUGGAGCCG	chr19:39926258-39926498(-)$1	240	73	113	16.1321
CGGGGUUGCCACUGCCACCUCAGGACCGCUGGUGACCCCU	chr21:46893715-46893968(+)$1	253	35	75	16.2276
GUCUUGCUGGAGAGCGCAUGAAUGCGAUCUUAGCAAGACC	chr20:34317336-34317550(-)$1	214	21	61	12.0510
UUGGUGGUGGGGAAGAAUGGAUUGUUGAAACCCUGCCAUU	chr2:219514982-219515234(-)$1	252	180	220	16.5014
CACCUCGGGCUCCACAGUGCCUCCUGCUUGGGCCCCGGGC	chr16:89977382-89977665(+)$1	283	13	53	16.4655
CUGCAGCUAGCUGACGUGGUGGACAGUGAGGCGCUGCAGG	chr2:242169248-242169524(-)$1	276	142	182	11.9555
CACCAGGUCACCAAGACUGUCAAGACGGUGACCACUCGGA	chr22:19969025-19969277(-)$1	252	11	51	12.6834

#DB
(....((((((((((.((......)).))))))))))...	chr11:800954-801196(-)$1	1	124	164	18.4463
((((.(((.((((.(((......))).)))).)))...))	chr14:102510131-102510344(+)$1	1	18	58	16.2292
(((((.((.(((((.((......))))))).)))).))).	chr14:74193459-74193790(-)$1	1	187	227	13.5443
..((.(((((((((.........)))))))))))...)))	chr16:70602811-70603066(+)$1	1	170	210	11.5859
.)))(((((((((((((.........))))))))))))).	chr5:95087863-95088192(+)$1	1	46	86	14.0170
(((....((...(.(((......)))..)...))...)))	chr19:13216080-13216385(-)$1	1	162	202	18.4603
(((.....(..((((((......))))))..)...)))))	chr7:1521002-1521260(-)$1	1	57	97	14.1218
...(((((((((.(((((...))))).)))))))))....	chr8:121824467-121824755(-)$1	1	180	220	12.4595
(((((((.....(((((......)))))...))))).)))	chr14:24112359-24112581(+)$1	1	163	203	13.2598
((((((((....(((.((......)).)))))))).))))	chr9:130707062-130707309(-)$1	1	199	239	14.6629
(((.((((((...((((......))))...))))))))))	chr2:178080151-178080363(+)$1	1	59	99	13.6339
(((((..((((...(((......)))..))))..))))))	chr16:84796563-84796833(+)$1	1	138	178	15.0288
((((.(((((((((..(......)..)).))))))).).(	chr11:121437524-121437809(+)$1	1	5	45	13.6656
((((((.(((.((.(((......)))..)).))).))).)	chr16:29989466-29989701(+)$1	1	94	134	16.7254
(((((((.(((((((.........)).)))))...)))))	chr2:96932918-96933209(+)$1	1	134	174	12.5070
(...(((((((((((.(......).))))...)))))))(	chrX:38663806-38664065(+)$1	1	41	81	12.5069
(((....(((.((((((......)))))).)))....)))	chr2:96991348-96991653(+)$1	1	228	268	15.2371
((...(((((.((((((......)))))))))))...)))	chr12:49438132-49438375(-)$1	1	47	87	15.0175
))..)))))(((..(((......))).)))((((((((((	chr1:16934855-16935171(-)$1	1	258	298	17.1163
(.(((((((((...(((......))).)))))))...)).	chr19:18266119-18266406(+)$1	1	178	218	18.6064
(...(((((((((((((.....)))))))))).)))))).	chr1:173833081-173833336(-)$1	1	93	133	15.2239
(....((((((((.(((......))).))))).)))..).	chr16:16465314-16465588(+)$1	1	120	160	17.3473
((.(((.((((((((((......)))....))))))).))	chr17:36878423-36878680(+)$1	1	7	47	17.9196
(.(((((((.(((..(((...)))..)))))))))).)).	chr9:71835696-71835943(+)$1	1	55	95	12.6721
((.((((..((((((((......))))).))))))).)))	chr15:91503436-91503714(+)$1	1	101	141	13.1029
((((((((......(((......))).))).)))))))))	chr20:61458495-61458743(+)$1	1	166	206	15.9427
((..(((((((((((((......)))....))))))).))	chr16:9186254-9186494(+)$1	1	11	51	17.7514
))((((..((((....(......)....))))....))))	chr17:34883859-34884126(-)$1	1	63	103	14.9808
(((((((((..((..((......))..))...)).)))))	chr9:139937377-139937640(-)$1	1	192	232	15.3974
.((((..((...(..((......))..).))..)))))))	chr3:101573388-101573632(+)$1	1	25	65	13.9103
(.(((((((((((((.(......).).)))))))))))).	chr20:47895506-47895734(+)$1	1	115	155	20.2088
..(((((..(((.((((......).)).).))).))).))	chr21:47977354-47977652(+)$1	1	238	278	15.6873
...(((.....((((((......)))))))))..))))).	chr5:110837640-110837889(-)$1	1	123	163	13.2990
)))).((((((((((((((......))).)))))))))))	chr2:97530268-97530490(-)$1	1	181	221	15.1563
..(((.(((((....(((......))))))))...)))..	chr14:54418386-54418654(-)$1	1	141	181	16.0266
....(((.((.((((((......))).))).)).)))...	chr16:8895497-8895747(+)$1	1	151	191	15.9488
(.(((.(((((((.((......)).)))))))))))))((	chr14:64906913-64907159(+)$1	1	61	101	15.4998
..))))))))))))(((......)))..((((((((((..	chr12:1881874-1882150(+)$1	1	175	215	13.9887
((((((..(((((((((......)))...)))))))))))	chr9:139757146-139757419(-)$1	1	52	92	14.0299
(((....((((.((((......)))).))))...)))...	chr19:2235873-2236150(-)$1	1	67	107	14.6855
(.(((((((...((((......))))))))))).))..))	chr7:5410404-5410655(-)$1	1	67	107	14.2579
..(((.(((((..((((((....))).))))))))...))	chr3:48668326-48668573(-)$1	1	86	126	12.9339
))))..(((((((((((......)))))))))))(((...	chr2:96954735-96954951(-)$1	1	71	111	15.2639
((.(((.((((((.(((......))).).))))).))).)	chr9:71864281-71864572(+)$1	1	96	136	16.6089
((....(((((...((......))...))))).)).))).	chr4:1741590-1741865(+)$1	1	16	56	15.0394
((...(((...((((.(......).))))..)))..))).	chr19:39926258-39926498(-)$1	1	73	113	16.1321
((((((((((((.(((......)).).).)))))))))).	chr21:46893715-46893968(+)$1	1	35	75	16.2276
(((((((((.(((.((((....)))).)))))))))))).	chr20:34317336-34317550(-)$1	1	21	61	12.0510
((((((((((((...(((.....)))....))))))))))	chr2:219514982-219515234(-)$1	1	180	220	16.5014
..(((.((((.((((((......)))..))))))).))).	chr16:89977382-89977665(+)$1	1	13	53	16.4655
(((((((...((.((.((.....)))).))..))))))))	chr2:242169248-242169524(-)$1	1	142	182	11.9555
(....(((((((....((....))..)))))))....)))	chr22:19969025-19969277(-)$1	1	11	51	12.6834

#PSSM
c : 0.13	d : 0.09	e : 0.09	b : 0.09	g : 0.07	f : 0.07	" : 0.05	= : 0.05	i : 0.03	h : 0.03	$ : 0.03	! : 0.03	% : 0.01	] : 0.01	F : 0.01	E : 0.01	a : 0.01	# : 0.01	o : 0.01	D : 0.01	
d : 0.09	c : 0.09	e : 0.09	[ : 0.09	# : 0.07	" : 0.07	f : 0.07	= : 0.07	g : 0.05	i : 0.03	h : 0.03	! : 0.03	b : 0.03	% : 0.01	F : 0.01	: : 0.01	$ : 0.01	o : 0.01	
c : 0.15	e : 0.11	# : 0.09	g : 0.09	= : 0.09	d : 0.07	" : 0.07	b : 0.05	[ : 0.05	i : 0.03	f : 0.01	F : 0.01	: : 0.01	2 : 0.01	! : 0.01	$ : 0.01	h : 0.01	
c : 0.17	# : 0.15	e : 0.09	= : 0.09	d : 0.07	b : 0.07	i : 0.05	" : 0.05	g : 0.05	$ : 0.01	[ : 0.01	f : 0.01	a : 0.01	: : 0.01	2 : 0.01	! : 0.01	h : 0.01	
c : 0.23	# : 0.13	= : 0.11	g : 0.09	e : 0.07	[ : 0.05	i : 0.05	d : 0.05	f : 0.03	" : 0.03	: : 0.03	b : 0.01	$ : 0.01	h : 0.01	
c : 0.23	= : 0.13	g : 0.13	[ : 0.09	e : 0.09	i : 0.07	# : 0.07	! : 0.03	d : 0.03	$ : 0.01	f : 0.01	h : 0.01	: : 0.01	
= : 0.15	c : 0.15	e : 0.15	g : 0.15	i : 0.07	! : 0.07	# : 0.05	[ : 0.05	$ : 0.03	d : 0.03	b : 0.01	f : 0.01	
g : 0.19	= : 0.15	e : 0.13	c : 0.11	b : 0.07	! : 0.07	i : 0.05	$ : 0.05	d : 0.05	[ : 0.03	f : 0.01	" : 0.01	
g : 0.19	= : 0.15	e : 0.15	b : 0.07	d : 0.07	i : 0.05	[ : 0.03	$ : 0.03	f : 0.03	c : 0.03	! : 0.03	" : 0.03	a : 0.01	# : 0.01	% : 0.01	
= : 0.15	e : 0.15	g : 0.15	d : 0.09	" : 0.09	c : 0.09	i : 0.03	! : 0.03	$ : 0.03	f : 0.03	[ : 0.03	# : 0.01	% : 0.01	b : 0.01	
= : 0.15	g : 0.15	e : 0.13	" : 0.09	[ : 0.09	c : 0.09	d : 0.07	i : 0.03	! : 0.03	$ : 0.03	# : 0.01	% : 0.01	f : 0.01	b : 0.01	
= : 0.13	" : 0.13	c : 0.13	g : 0.11	f : 0.09	d : 0.07	e : 0.07	b : 0.05	i : 0.03	# : 0.03	$ : 0.01	% : 0.01	[ : 0.01	! : 0.01	a : 0.01	
= : 0.11	d : 0.09	e : 0.09	f : 0.09	c : 0.09	" : 0.09	[ : 0.07	g : 0.07	a : 0.05	b : 0.05	# : 0.05	! : 0.03	i : 0.01	% : 0.01	
[ : 0.13	= : 0.11	f : 0.09	d : 0.09	e : 0.07	c : 0.07	" : 0.07	! : 0.07	b : 0.05	g : 0.05	# : 0.05	a : 0.03	i : 0.01	% : 0.01	
c : 0.32	d : 0.11	b : 0.11	= : 0.09	f : 0.07	! : 0.07	e : 0.05	# : 0.05	[ : 0.01	r : 0.01	a : 0.01	" : 0.01	
c : 0.36	b : 0.13	[ : 0.11	= : 0.07	f : 0.07	d : 0.07	e : 0.05	r : 0.03	# : 0.03	! : 0.01	
c : 0.38	b : 0.13	a : 0.11	o : 0.09	f : 0.07	= : 0.05	e : 0.05	r : 0.03	d : 0.03	
o : 0.71	c : 0.09	b : 0.07	r : 0.05	e : 0.01	n : 0.01	d : 0.01	
o : 0.76	r : 0.05	n : 0.05	l : 0.03	c : 0.03	m : 0.03	
o : 0.78	r : 0.05	n : 0.05	m : 0.05	l : 0.03	
o : 0.78	r : 0.05	n : 0.05	m : 0.05	l : 0.03	
o : 0.78	r : 0.05	n : 0.05	m : 0.05	e : 0.01	c : 0.01	
o : 0.69	b : 0.07	r : 0.05	d : 0.05	n : 0.03	e : 0.01	= : 0.01	c : 0.01	m : 0.01	
c : 0.34	b : 0.15	a : 0.11	o : 0.07	f : 0.07	d : 0.07	e : 0.05	r : 0.03	= : 0.03	i : 0.01	
c : 0.34	b : 0.13	] : 0.11	f : 0.07	d : 0.07	e : 0.05	2 : 0.05	= : 0.03	i : 0.01	r : 0.01	4 : 0.01	o : 0.01	3 : 0.01	
c : 0.36	d : 0.11	b : 0.09	2 : 0.09	e : 0.07	f : 0.07	= : 0.03	a : 0.03	i : 0.01	r : 0.01	4 : 0.01	g : 0.01	3 : 0.01	
] : 0.30	2 : 0.11	f : 0.07	4 : 0.07	e : 0.05	= : 0.05	d : 0.05	b : 0.05	c : 0.05	g : 0.05	3 : 0.03	i : 0.01	: : 0.01	
c : 0.15	e : 0.13	= : 0.09	d : 0.07	2 : 0.07	f : 0.07	g : 0.07	4 : 0.07	a : 0.05	i : 0.03	3 : 0.03	b : 0.03	] : 0.03	: : 0.01	
c : 0.15	= : 0.11	d : 0.11	] : 0.11	e : 0.09	f : 0.07	g : 0.07	3 : 0.05	b : 0.05	4 : 0.05	i : 0.03	a : 0.03	
c : 0.17	= : 0.15	e : 0.13	g : 0.11	3 : 0.09	d : 0.07	b : 0.05	4 : 0.05	i : 0.03	2 : 0.03	] : 0.03	f : 0.01	
= : 0.19	e : 0.15	g : 0.15	c : 0.09	d : 0.07	] : 0.07	3 : 0.07	i : 0.05	2 : 0.05	f : 0.03	b : 0.01	
= : 0.21	e : 0.17	g : 0.15	c : 0.11	3 : 0.07	i : 0.05	d : 0.05	b : 0.03	f : 0.03	2 : 0.03	] : 0.01	a : 0.01	
= : 0.21	g : 0.15	c : 0.11	b : 0.09	e : 0.09	3 : 0.07	2 : 0.05	] : 0.05	i : 0.03	f : 0.03	d : 0.03	4 : 0.01	
= : 0.21	c : 0.11	g : 0.11	b : 0.09	e : 0.09	3 : 0.07	4 : 0.05	d : 0.05	] : 0.05	i : 0.03	f : 0.03	2 : 0.03	
= : 0.19	c : 0.15	3 : 0.13	g : 0.09	e : 0.07	b : 0.05	f : 0.05	] : 0.05	4 : 0.05	d : 0.05	i : 0.03	2 : 0.01	
= : 0.19	c : 0.19	3 : 0.11	g : 0.11	] : 0.07	e : 0.05	i : 0.05	4 : 0.05	f : 0.03	d : 0.03	h : 0.01	b : 0.01	2 : 0.01	
c : 0.24	= : 0.19	3 : 0.11	g : 0.09	] : 0.07	d : 0.05	e : 0.03	i : 0.03	4 : 0.03	2 : 0.03	> : 0.01	f : 0.01	h : 0.01	
c : 0.19	= : 0.17	3 : 0.07	d : 0.07	g : 0.07	f : 0.07	e : 0.05	] : 0.05	i : 0.03	b : 0.03	2 : 0.03	> : 0.01	a : 0.01	6 : 0.01	h : 0.01	o : 0.01	
c : 0.17	= : 0.15	d : 0.09	e : 0.09	g : 0.07	f : 0.07	b : 0.05	3 : 0.03	] : 0.03	i : 0.03	> : 0.01	: : 0.01	a : 0.01	2 : 0.01	6 : 0.01	' : 0.01	h : 0.01	o : 0.01	
] : 0.11	d : 0.09	f : 0.09	c : 0.09	= : 0.09	e : 0.07	3 : 0.05	: : 0.05	g : 0.05	i : 0.03	4 : 0.03	b : 0.03	2 : 0.03	> : 0.01	6 : 0.01	' : 0.01	h : 0.01	o : 0.01	

#score	781.7344731355274
#seq	52
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF656IDO_XRCC6_UTR_m1_run2.txt

#BEAR
eeeee22dddd22ccc]bb4444ffffff22ddddeeeee	chr2:85546249-85546464(-)$1	215	105	145	23.4568
eeeee]a22ggggggg>>>>>>>>>>>>>>>>dddd]ddd	chr6:30711093-30711367(-)$1	274	72	112	21.9051
dddcccooooooccc0000000000dddd333dddd]iii	chr3:184036867-184037123(+)$1	256	167	207	22.0532
fffddddmmmmdddd88888888ffffff22ffffff===	chr10:103606793-103607043(-)$1	250	87	127	20.8827
eeeee22dddd22ccc]bb4444ffffff22ddddfffff	chr2:85546235-85546449(-)$1	214	90	130	23.4374

#otherMatches

#Seq PSSM
cacugaacuccaaccugccaauagagcgagacuccgucuc	chr2:85546249-85546464(-)$1	215	105	145	23.4568
ACCUGGAACUGCGGCAAAGUAGGAGAAGAAAUGGGGAGGA	chr6:30711093-30711367(-)$1	274	72	112	21.9051
GGCAGAUCUCUUUCUCUCAUUACCAGCCAAAGACCUGGUU	chr3:184036867-184037123(+)$1	256	167	207	22.0532
GGUGAGGCAAGCCUCAGGGUAAUGCCAGCACCCUGAAAGU	chr10:103606793-103607043(-)$1	250	87	127	20.8827
cacugaacuccaaccugccaauagagcgagacuccgucuc	chr2:85546235-85546449(-)$1	214	90	130	23.4374

#DB
)))))..))))..))).))....))))))..)))))))))	chr2:85546249-85546464(-)$1	1	105	145	23.4568
))))).)..)))))))................)))).)))	chr6:30711093-30711367(-)$1	1	72	112	21.9051
((((((......)))..........))))...)))).)))	chr3:184036867-184037123(+)$1	1	167	207	22.0532
(((((((....))))........))))))..)))))))))	chr10:103606793-103607043(-)$1	1	87	127	20.8827
)))))..))))..))).))....))))))..)))))))))	chr2:85546235-85546449(-)$1	1	90	130	23.4374

#PSSM
e : 0.60	d : 0.20	f : 0.20	
e : 0.60	d : 0.20	f : 0.20	
e : 0.60	d : 0.20	f : 0.20	
e : 0.60	c : 0.20	d : 0.20	
e : 0.60	c : 0.20	d : 0.20	
2 : 0.40	] : 0.20	c : 0.20	d : 0.20	
2 : 0.40	a : 0.20	o : 0.20	d : 0.20	
d : 0.40	2 : 0.20	o : 0.20	m : 0.20	
d : 0.40	2 : 0.20	o : 0.20	m : 0.20	
d : 0.40	g : 0.20	o : 0.20	m : 0.20	
d : 0.40	g : 0.20	o : 0.20	m : 0.20	
2 : 0.40	g : 0.20	o : 0.20	d : 0.20	
2 : 0.40	g : 0.20	c : 0.20	d : 0.20	
c : 0.60	g : 0.20	d : 0.20	
c : 0.60	g : 0.20	d : 0.20	
c : 0.40	g : 0.20	0 : 0.20	8 : 0.20	
] : 0.40	> : 0.20	0 : 0.20	8 : 0.20	
b : 0.40	> : 0.20	0 : 0.20	8 : 0.20	
b : 0.40	> : 0.20	0 : 0.20	8 : 0.20	
4 : 0.40	> : 0.20	0 : 0.20	8 : 0.20	
4 : 0.40	> : 0.20	0 : 0.20	8 : 0.20	
4 : 0.40	> : 0.20	0 : 0.20	8 : 0.20	
4 : 0.40	> : 0.20	0 : 0.20	8 : 0.20	
f : 0.60	> : 0.20	0 : 0.20	
f : 0.60	> : 0.20	0 : 0.20	
f : 0.60	> : 0.20	d : 0.20	
f : 0.60	> : 0.20	d : 0.20	
f : 0.60	> : 0.20	d : 0.20	
f : 0.60	> : 0.20	d : 0.20	
2 : 0.60	> : 0.20	3 : 0.20	
2 : 0.60	> : 0.20	3 : 0.20	
d : 0.40	> : 0.20	3 : 0.20	f : 0.20	
d : 0.80	f : 0.20	
d : 0.80	f : 0.20	
d : 0.80	f : 0.20	
d : 0.40	f : 0.40	e : 0.20	
] : 0.40	f : 0.40	e : 0.20	
e : 0.20	d : 0.20	i : 0.20	= : 0.20	f : 0.20	
e : 0.20	d : 0.20	i : 0.20	= : 0.20	f : 0.20	
e : 0.20	d : 0.20	i : 0.20	= : 0.20	f : 0.20	

#score	111.73547111747999
#seq	5
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_CDS_m2_run2.txt

#BEAR
""iiiiiiiiiqqqqqqqqiiiiiiiii	chr1:19557674-19557975(-)$1	301	46	74	16.9872
!ffffff!!bbqqqqqqqqbb333ffff	chr12:56536913-56537159(+)$1	246	61	89	16.6043
d[ccc[bb[bbqqqqqqqqbb]bb]ccc	chr11:62648504-62648773(+)$1	269	47	75	15.6576
""bb!!eeeeeqqqqqqqqeeeee]bb]	chr17:26696269-26696524(-)$1	255	186	214	15.9443
ccc!!ccc[bbqqqqqqqqbb]ccc22c	chr3:190039692-190039959(-)$1	267	15	43	16.3430
======eeeeeqqqqqqqqeeeee22==	chrX:105970208-105970532(+)$1	324	153	181	16.3022
Gbb[gggggggqqqqqqqqggggggg]b	chr17:48460332-48460597(-)$1	265	80	108	15.9399
ggggdddd[bbqqqqqqqqbb]dddd55	chr20:30193758-30193967(+)$1	209	99	127	14.7272
ii:ccc[ddddqqqqqqqqdddd]cccf	chr17:79478010-79478233(-)$1	223	72	100	15.3400
===========qqqqqqqq=========	chr7:75686661-75686912(+)$1	251	202	230	17.3591
[affffff!!aqqqqqqqqa22ffffff	chr1:211751797-211752049(-)$1	252	207	235	15.7024
e[ccc!!ddddqqqqqqqqdddd22ccc	chr6:132271521-132271765(-)$1	244	143	171	16.6133
d[ccc[eeeeeqqqqqqqqeeeee]ccc	chr19:6686060-6686287(-)$1	227	138	166	16.5315
eeeee!!ddddqqqqqqqqdddd22eee	chr17:73946843-73947148(-)$1	305	23	51	15.9594
ffffgggggggqqqqqqqqgggggggFF	chr17:21075287-21075593(+)$1	306	54	82	15.7422
b[ccc[cccbbqqqqqqqqbb]ccc]cc	chr8:17739526-17739780(-)$1	254	101	129	16.4932
cccbb[eeeeeqqqqqqqqeeeee]bb]	chr1:226016405-226016666(+)$1	261	121	149	15.4756
[bbhhhhhhhhqqqqqqqqhhhhhhhh3	chr9:101990087-101990343(+)$1	256	18	46	14.0975
dd$$$$$ddddqqqqqqqqdddd22ddd	chr3:148925067-148925332(-)$1	265	28	56	14.5948
[ccc[ffffffqqqqqqqqffffffccc	chr4:74275936-74276158(+)$1	222	44	72	15.5228
cc[agggggggqqqqqqqqggggggg]a	chr14:102481474-102481735(+)$1	261	37	65	16.8078
ffffgggggggqqqqqqqqggggggg44	chr19:6706990-6707246(-)$1	256	142	170	16.8960
DDiiiiiiiiiqqqqqqqqiiiiiiiii	chr4:155487649-155487858(+)$1	209	114	142	14.6078
e[ggggggg[aqqqqqqqqa]ggggggg	chr7:143573413-143573780(-)$1	367	253	281	16.9614
####bb!!cccqqqqqqqqccc22bb44	chr19:6697319-6697563(-)$1	244	94	122	16.0286
!ccc!!eeeeeqqqqqqqqeeeee]ccc	chr7:10979554-10979858(-)$1	304	25	53	16.7969
ggggdddd[bbqqqqqqqqbb]dddd55	chr20:30193782-30194029(+)$1	247	75	103	14.7272
Bggggggg[bbqqqqqqqqbb]gggggg	chr19:6710563-6710828(-)$1	265	33	61	16.0939
e"""dddd[bbqqqqqqqqbb]dddd44	chr1:92262910-92263130(-)$1	220	67	95	16.2425
::ffffffcccqqqqqqqqccc]fffff	chr14:24569131-24569388(+)$1	257	216	244	14.0769
eeee[ccc[bbqqqqqqqqbb]ccc]ee	chr6:28891274-28891560(-)$1	286	1	29	16.1295
e[bb[a[ddddqqqqqqqqdddd]abb]	chr13:100153754-100154018(+)$1	264	172	200	15.6284
:eeeee!!cccqqqqqqqqccc22eeee	chr11:71149844-71150140(-)$1	296	265	293	15.2562
eeeeebb"""aqqqqqqqqa333bb]ee	chr17:1674314-1674558(+)$1	244	41	69	14.8622
!ffffff!!bbqqqqqqqqbb22fffff	chr10:7750939-7751168(+)$1	229	109	137	16.0326
e$$$$$cccbbqqqqqqqqbb]ccceee	chr3:133474168-133474385(+)$1	217	164	192	15.2397
""dddd[ddddqqqqqqqqdddd]dddd	chrX:77380723-77380961(+)$1	238	183	211	15.6923
ffff!!eeeeeqqqqqqqqeeeeeffff	chr12:9253654-9253863(-)$1	209	47	75	16.1379
fffff!!ddddqqqqqqqqdddd22fff	chr4:74302790-74302998(+)$1	208	122	150	16.1152
""ccc[eeeeeqqqqqqqqeeeeeccc3	chr7:75608684-75608926(+)$1	242	35	63	16.8028
ddd[eeeee[aqqqqqqqqa]eeeee]d	chr20:34135061-34135357(+)$1	296	201	229	15.7558
dddd####cccqqqqqqqqccc22dddd	chr8:97614522-97614751(+)$1	229	43	71	15.6103
eeeee!!ddddqqqqqqqqdddd22eee	chr11:118965878-118966152(-)$1	274	70	98	15.9594
ccc[gggggggqqqqqqqqgggggggcc	chr16:30080720-30080961(+)$1	241	77	105	16.9161
ffffffeeeeeqqqqqqqqeeeee4444	chr11:130011712-130011956(+)$1	244	78	106	16.0254
[ffffff!!bbqqqqqqqqbb22fffff	chr12:46754836-46755079(-)$1	243	33	61	16.0107
iiiiiddddbbqqqqqqqqbb]dddd33	chr17:16256269-16256662(-)$1	393	339	367	16.3480
""eeeee[cccqqqqqqqqccc]eeeee	chr12:6979334-6979598(+)$1	264	123	151	16.2491
bb####ccc[aqqqqqqqqa]ccc333b	chr20:44520461-44520744(+)$1	283	44	72	16.0107
eeeee[eeeeeqqqqqqqqeeeee]eee	chr7:75692744-75693011(+)$1	267	28	56	15.9445
gg[ddddddddqqqqqqqqdddd22ddd	chr12:9254042-9254269(-)$1	227	54	82	15.3427
dddddd!!cccqqqqqqqqcccdddd]d	chr9:35059677-35059898(-)$1	221	182	210	15.7285
ffffgggggggqqqqqqqqggggggg::	chr7:75609602-75609842(+)$1	240	88	116	14.8921
hhhhbb!!cccqqqqqqqqccc22bb33	chr1:230846423-230846633(-)$1	210	30	58	15.2410
ffffgggggggqqqqqqqqggggggg22	chr7:107595855-107596105(-)$1	250	165	193	16.4744
hhdddd[ddddqqqqqqqqdddd]dddd	chr2:8822243-8822505(+)$1	262	74	102	14.9911
%ffffffbb[aqqqqqqqqa]bb]ffff	chr1:182356266-182356529(-)$1	263	160	188	14.2384
!bb!!a!!cccqqqqqqqqccc22a22b	chr12:50152902-50153158(+)$1	256	140	168	16.2455
eeee####cccqqqqqqqqccc4444ee	chr19:19010599-19010857(-)$1	258	1	29	16.0743
""dddd[a[bbqqqqqqqqbb]adddd2	chr16:5125286-5125559(+)$1	273	107	135	15.8673
bb!!gggggggqqqqqqqqggggggg]b	chr1:19577828-19578086(-)$1	258	59	87	16.3699
fff!!ffffffqqqqqqqqfffffffff	chr6:44217428-44217671(+)$1	243	26	54	15.1724
a[ccc[eeeeeqqqqqqqqeeeeeccc]	chr1:979613-979825(+)$1	212	154	182	16.5943
[bb[dddd!!aqqqqqqqqa22dddd22	chr2:171573177-171573430(+)$1	253	6	34	15.4228

#otherMatches

#Seq PSSM
UUGCUCAUUUUAGGAGUCGGGAAUGAGU	chr1:19557674-19557975(-)$1	301	46	74	16.9872
AAGGACUCCUGGCCCCUAACAUCCAGUC	chr12:56536913-56537159(+)$1	246	61	89	16.6043
CGAGAAGCAGCCGAUGAACGCGGCGUCU	chr11:62648504-62648773(+)$1	269	47	75	15.6576
ACUGUCAGGGGAAGACCUACCUCUUCAA	chr17:26696269-26696524(-)$1	255	186	214	15.9443
UGGAUCGGCGCCAUCGUCAGCACUGCCC	chr3:190039692-190039959(-)$1	267	15	43	16.3430
GGACUCGCCGCUGGAGCCUGUGGCUGGG	chrX:105970208-105970532(+)$1	324	153	181	16.3022
gcugcugcugcuAUUUGGUGUGGCGGGA	chr17:48460332-48460597(-)$1	265	80	108	15.9399
GGCAUGCGUUCCUGCGGACGAUCGCAUC	chr20:30193758-30193967(+)$1	209	99	127	14.7272
UCACUAAGGGAGGGCUCUGUCCCCUAGG	chr17:79478010-79478233(-)$1	223	72	100	15.3400
UAAAUCCAUUUCCUAUUAAAAAUGGAUU	chr7:75686661-75686912(+)$1	251	202	230	17.3591
UCUCCGACUCCUUCCACAUGCUGUCGGA	chr1:211751797-211752049(-)$1	252	207	235	15.7024
GAGCAGCUGCAAGUACCAGUGCACGUGC	chr6:132271521-132271765(-)$1	244	143	171	16.6133
UAUGGCUCUACCCAGGCAAGUGGGCCCA	chr19:6686060-6686287(-)$1	227	138	166	16.5315
GAGGAGGGGUGUGUUUUCUCAUUGGUUC	chr17:73946843-73947148(-)$1	305	23	51	15.9594
CGAAGGUGAAGGCCAUGGACUUCAUCAC	chr17:21075287-21075593(+)$1	306	54	82	15.7422
GACUGUGCCCAGGAGCAGAUGCGGCUCA	chr8:17739526-17739780(-)$1	254	101	129	16.4932
UGGUGGGGGCCAGGCACGAGGUCCGCAG	chr1:226016405-226016666(+)$1	261	121	149	15.4756
AAUGGUAGCAUAUGUUAUAAUGCUAUUC	chr9:101990087-101990343(+)$1	256	18	46	14.0975
GCACGCAGCUUUCUUUCACGGGCAAGCA	chr3:148925067-148925332(-)$1	265	28	56	14.5948
CAUGUAGAAUUUUUCUUCUAAUUUUCAU	chr4:74275936-74276158(+)$1	222	44	72	15.5228
UCUGGUUCAGUGAGGAUGUGCUGAGCAC	chr14:102481474-102481735(+)$1	261	37	65	16.8078
ACCUGGGCCUGGCCAGGAGUAGGUCCCA	chr19:6706990-6707246(-)$1	256	142	170	16.8960
UCCUUUCAGUACAUGUAUUUGCUGAAAG	chr4:155487649-155487858(+)$1	209	114	142	14.6078
CUGGUGGUCGUGUCCCAUGAGGACUACU	chr7:143573413-143573780(-)$1	367	253	281	16.9614
GUCCGUUCCAUAUGUCAUCGUGCCGCUA	chr19:6697319-6697563(-)$1	244	94	122	16.0286
CAAGCUGCCCUCCCAGCCAAGGGUCCUU	chr7:10979554-10979858(-)$1	304	25	53	16.7969
GGCAUGCGUUCCUGCGGACGAUCGCAUC	chr20:30193782-30194029(+)$1	247	75	103	14.7272
UGGUGGUGCUGCCCCUGUCCAUCACCAC	chr19:6710563-6710828(-)$1	265	33	61	16.0939
UUCUGAGUGGCUUGUGUUUGUGAUUCCC	chr1:92262910-92263130(-)$1	220	67	95	16.2425
ACUGGGAGGGCAUUGACCAGCCUCUUCC	chr14:24569131-24569388(+)$1	257	216	244	14.0769
GCGCGUCUGGGAUACGGGCCCGGGAGGC	chr6:28891274-28891560(-)$1	286	1	29	16.1295
CUGCUGGGGGCGGUUCCUGGCCCGCGCC	chr13:100153754-100154018(+)$1	264	172	200	15.6284
GGGGAACCCGCAAGCCAGAGCGUAUUCC	chr11:71149844-71150140(-)$1	296	265	293	15.2562
GGGCUCUCUACUAUGACUUGAUCAGCAG	chr17:1674314-1674558(+)$1	244	41	69	14.8622
CCACCACCAUGAUCCAGAGCAAAGUGGU	chr10:7750939-7751168(+)$1	229	109	137	16.0326
CCUUCAAGUGAGUGAGAUGUCUGCUGCU	chr3:133474168-133474385(+)$1	217	164	192	15.2397
UUGGAGCUCCUGGAAGGUGAGGGUCUUC	chrX:77380723-77380961(+)$1	238	183	211	15.6923
UCCUUUUUUGCAGAUAAUGGCAAAGGGA	chr12:9253654-9253863(-)$1	209	47	75	16.1379
UAAGUUUAGCUGACCUGUAAGUUUUGCU	chr4:74302790-74302998(+)$1	208	122	150	16.1152
CGUGGCUGAGGUCUGUGGCCCUCACCAA	chr7:75608684-75608926(+)$1	242	35	63	16.8028
UGGGGGGGAGCGGGAGCAGGGUUCCCAU	chr20:34135061-34135357(+)$1	296	201	229	15.7558
AUGGAGACAUCUGUGUCAUGAUUGCCAU	chr8:97614522-97614751(+)$1	229	43	71	15.6103
GCGGCAAGGCCCGCGCCAAGGCCAAGUC	chr11:118965878-118966152(-)$1	274	70	98	15.9594
CCGUGCGCCUGCUCUGCUCCAGGUGCUG	chr16:30080720-30080961(+)$1	241	77	105	16.9161
UCCACGUCUGCUUUAUUACGUAGGAAUC	chr11:130011712-130011956(+)$1	244	78	106	16.0254
UUUAGCAUAUAUGUUUUAUUACUUGCUG	chr12:46754836-46755079(-)$1	243	33	61	16.0107
gggggcgcgggAGCCGUUGCCACGCGGA	chr17:16256269-16256662(-)$1	393	339	367	16.3480
CUGGCCAGCCAGCCUGAUGUGGAUGGCU	chr12:6979334-6979598(+)$1	264	123	151	16.2491
GGAAAGGGCCCCUCCAACUGCGCCAACC	chr20:44520461-44520744(+)$1	283	44	72	16.0107
UGACAUGUUUUACAGUGAAAGAGCUUGU	chr7:75692744-75693011(+)$1	267	28	56	15.9445
ACGAAGAGGCACAUCACACUGCUUAUCU	chr12:9254042-9254269(-)$1	227	54	82	15.3427
GUGGUGGGGCUGCUGACCGAGUCAUCAA	chr9:35059677-35059898(-)$1	221	182	210	15.7285
CCCUGGUGGUUUUCUGCAUGGCCACCUA	chr7:75609602-75609842(+)$1	240	88	116	14.8921
UCAGGGUAUGCGGAAGCGAGCACCCCAG	chr1:230846423-230846633(-)$1	210	30	58	15.2410
UGCCUGUGUUUGUGAUCCUGGAUACAUU	chr7:107595855-107596105(-)$1	250	165	193	16.4744
GGUCCGUUAGGAAAAACAGCCUGUCGGA	chr2:8822243-8822505(+)$1	262	74	102	14.9911
UGACAUGUAUCUCGUGCCUGCUGCCAUG	chr1:182356266-182356529(-)$1	263	160	188	14.2384
GUCCUUUUUGAUACUCAACUCAUUAUUG	chr12:50152902-50153158(+)$1	256	140	168	16.2455
GGGUACUGUGGCUCUCACCCCAAUCCAC	chr19:19010599-19010857(-)$1	258	1	29	16.0743
CCCAGGUCUGCCUAGCAUUGCUGUCUGC	chr16:5125286-5125559(+)$1	273	107	135	15.8673
GUGGGUGGUGCAUGCGCUCGCAUCAUGG	chr1:19577828-19578086(-)$1	258	59	87	16.3699
UUUAUUCUGCCUACUUGGUGGCAGAGAA	chr6:44217428-44217671(+)$1	243	26	54	15.1724
AGGUGUGAGUCACAGCGAGGGCUCUACG	chr1:979613-979825(+)$1	212	154	182	16.5943
CGCCAGGCUACUCCAACCUgcugccucc	chr2:171573177-171573430(+)$1	253	6	34	15.4228

#DB
..(((((((((........)))))))))	chr1:19557674-19557975(-)$1	1	46	74	16.9872
.((((((..((........))...))))	chr12:56536913-56537159(+)$1	1	61	89	16.6043
(.(((.((.((........)).)).)))	chr11:62648504-62648773(+)$1	1	47	75	15.6576
..((..(((((........))))).)).	chr17:26696269-26696524(-)$1	1	186	214	15.9443
(((..(((.((........)).)))..)	chr3:190039692-190039959(-)$1	1	15	43	16.3430
(((((((((((........)))))..))	chrX:105970208-105970532(+)$1	1	153	181	16.3022
(((.(((((((........))))))).)	chr17:48460332-48460597(-)$1	1	80	108	15.9399
((((((((.((........)).))))..	chr20:30193758-30193967(+)$1	1	99	127	14.7272
)).(((.((((........)))).)))(	chr17:79478010-79478233(-)$1	1	72	100	15.3400
(((((((((((........)))))))))	chr7:75686661-75686912(+)$1	1	202	230	17.3591
.(((((((..(........)..))))))	chr1:211751797-211752049(-)$1	1	207	235	15.7024
(.(((..((((........))))..)))	chr6:132271521-132271765(-)$1	1	143	171	16.6133
(.(((.(((((........))))).)))	chr19:6686060-6686287(-)$1	1	138	166	16.5315
(((((..((((........))))..)))	chr17:73946843-73947148(-)$1	1	23	51	15.9594
))))(((((((........)))))))((	chr17:21075287-21075593(+)$1	1	54	82	15.7422
(.(((.(((((........)).))).))	chr8:17739526-17739780(-)$1	1	101	129	16.4932
(((((.(((((........))))).)).	chr1:226016405-226016666(+)$1	1	121	149	15.4756
.((((((((((........)))))))).	chr9:101990087-101990343(+)$1	1	18	46	14.0975
((.....((((........))))..)))	chr3:148925067-148925332(-)$1	1	28	56	14.5948
.(((.((((((........)))))))))	chr4:74275936-74276158(+)$1	1	44	72	15.5228
((.((((((((........))))))).)	chr14:102481474-102481735(+)$1	1	37	65	16.8078
(((((((((((........)))))))..	chr19:6706990-6707246(-)$1	1	142	170	16.8960
(((((((((((........)))))))))	chr4:155487649-155487858(+)$1	1	114	142	14.6078
(.(((((((.(........).)))))))	chr7:143573413-143573780(-)$1	1	253	281	16.9614
....((..(((........)))..))..	chr19:6697319-6697563(-)$1	1	94	122	16.0286
.(((..(((((........))))).)))	chr7:10979554-10979858(-)$1	1	25	53	16.7969
((((((((.((........)).))))..	chr20:30193782-30194029(+)$1	1	75	103	14.7272
((((((((.((........)).))))))	chr19:6710563-6710828(-)$1	1	33	61	16.0939
(...((((.((........)).))))..	chr1:92262910-92263130(-)$1	1	67	95	16.2425
..(((((((((........))).)))))	chr14:24569131-24569388(+)$1	1	216	244	14.0769
((((.(((.((........)).))).))	chr6:28891274-28891560(-)$1	1	1	29	16.1295
(.((.(.((((........)))).))).	chr13:100153754-100154018(+)$1	1	172	200	15.6284
.(((((..(((........)))..))))	chr11:71149844-71150140(-)$1	1	265	293	15.2562
(((((((...(........)...)).))	chr17:1674314-1674558(+)$1	1	41	69	14.8622
.((((((..((........))..)))))	chr10:7750939-7751168(+)$1	1	109	137	16.0326
(.....(((((........)).))))))	chr3:133474168-133474385(+)$1	1	164	192	15.2397
..((((.((((........)))).))))	chrX:77380723-77380961(+)$1	1	183	211	15.6923
((((..(((((........)))))))))	chr12:9253654-9253863(-)$1	1	47	75	16.1379
(((((..((((........))))..)))	chr4:74302790-74302998(+)$1	1	122	150	16.1152
..(((.(((((........)))))))).	chr7:75608684-75608926(+)$1	1	35	63	16.8028
(((.(((((.(........).))))).)	chr20:34135061-34135357(+)$1	1	201	229	15.7558
((((....(((........)))..))))	chr8:97614522-97614751(+)$1	1	43	71	15.6103
(((((..((((........))))..)))	chr11:118965878-118966152(-)$1	1	70	98	15.9594
(((.(((((((........)))))))))	chr16:30080720-30080961(+)$1	1	77	105	16.9161
(((((((((((........)))))....	chr11:130011712-130011956(+)$1	1	78	106	16.0254
.((((((..((........))..)))))	chr12:46754836-46755079(-)$1	1	33	61	16.0107
(((((((((((........)).))))..	chr17:16256269-16256662(-)$1	1	339	367	16.3480
..(((((.(((........))).)))))	chr12:6979334-6979598(+)$1	1	123	151	16.2491
((....(((.(........).)))...)	chr20:44520461-44520744(+)$1	1	44	72	16.0107
(((((.(((((........))))).)))	chr7:75692744-75693011(+)$1	1	28	56	15.9445
((.((((((((........))))..)))	chr12:9254042-9254269(-)$1	1	54	82	15.3427
((((((..(((........))))))).)	chr9:35059677-35059898(-)$1	1	182	210	15.7285
))))(((((((........)))))))..	chr7:75609602-75609842(+)$1	1	88	116	14.8921
((((((..(((........)))..))..	chr1:230846423-230846633(-)$1	1	30	58	15.2410
(((((((((((........)))))))..	chr7:107595855-107596105(-)$1	1	165	193	16.4744
))((((.((((........)))).))))	chr2:8822243-8822505(+)$1	1	74	102	14.9911
.((((((((.(........).)).))))	chr1:182356266-182356529(-)$1	1	160	188	14.2384
.((..(..(((........)))..)..)	chr12:50152902-50153158(+)$1	1	140	168	16.2455
((((....(((........)))....))	chr19:19010599-19010857(-)$1	1	1	29	16.0743
..((((.(.((........)).))))).	chr16:5125286-5125559(+)$1	1	107	135	15.8673
((..(((((((........))))))).)	chr1:19577828-19578086(-)$1	1	59	87	16.3699
(((..((((((........)))))))))	chr6:44217428-44217671(+)$1	1	26	54	15.1724
(.(((.(((((........)))))))).	chr1:979613-979825(+)$1	1	154	182	16.5943
.((.((((..(........)..))))..	chr2:171573177-171573430(+)$1	1	6	34	15.4228

#PSSM
e : 0.17	f : 0.12	" : 0.09	d : 0.09	[ : 0.07	! : 0.06	c : 0.06	g : 0.04	b : 0.04	= : 0.03	i : 0.03	: : 0.03	h : 0.03	G : 0.01	D : 0.01	# : 0.01	B : 0.01	% : 0.01	a : 0.01	
f : 0.18	" : 0.10	[ : 0.10	e : 0.10	c : 0.09	b : 0.09	g : 0.06	d : 0.06	= : 0.03	i : 0.03	h : 0.03	a : 0.01	D : 0.01	# : 0.01	: : 0.01	$ : 0.01	
f : 0.21	c : 0.17	e : 0.12	b : 0.09	d : 0.09	g : 0.06	i : 0.04	= : 0.03	$ : 0.03	[ : 0.03	# : 0.03	: : 0.01	" : 0.01	h : 0.01	! : 0.01	
f : 0.20	c : 0.14	e : 0.12	d : 0.09	! : 0.06	[ : 0.06	g : 0.06	i : 0.04	b : 0.04	= : 0.03	h : 0.03	$ : 0.03	# : 0.03	a : 0.01	" : 0.01	
g : 0.15	d : 0.14	f : 0.12	c : 0.10	e : 0.10	! : 0.09	i : 0.04	b : 0.04	[ : 0.04	# : 0.04	= : 0.03	$ : 0.03	h : 0.01	
g : 0.15	d : 0.15	f : 0.14	[ : 0.10	! : 0.10	c : 0.04	b : 0.04	e : 0.04	# : 0.04	i : 0.03	= : 0.03	$ : 0.03	a : 0.03	h : 0.01	
e : 0.18	g : 0.15	! : 0.14	f : 0.12	d : 0.09	c : 0.07	[ : 0.07	i : 0.03	b : 0.03	# : 0.03	= : 0.01	h : 0.01	$ : 0.01	
d : 0.23	e : 0.17	g : 0.15	! : 0.12	c : 0.07	f : 0.06	i : 0.03	b : 0.03	# : 0.03	= : 0.01	h : 0.01	" : 0.01	[ : 0.01	a : 0.01	
c : 0.18	e : 0.17	d : 0.17	g : 0.14	[ : 0.12	! : 0.07	i : 0.03	f : 0.03	= : 0.01	h : 0.01	" : 0.01	b : 0.01	
b : 0.21	e : 0.15	d : 0.15	c : 0.14	g : 0.12	[ : 0.06	i : 0.03	! : 0.03	f : 0.03	= : 0.01	h : 0.01	" : 0.01	
b : 0.21	e : 0.15	d : 0.15	c : 0.14	g : 0.12	a : 0.10	i : 0.03	f : 0.03	= : 0.01	h : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
b : 0.21	e : 0.15	d : 0.15	c : 0.14	g : 0.12	a : 0.10	i : 0.03	f : 0.03	= : 0.01	h : 0.01	
b : 0.21	e : 0.15	d : 0.15	c : 0.14	g : 0.12	] : 0.06	i : 0.03	2 : 0.03	f : 0.03	= : 0.01	h : 0.01	3 : 0.01	
] : 0.17	e : 0.17	d : 0.15	c : 0.15	g : 0.14	2 : 0.06	i : 0.03	3 : 0.03	f : 0.03	= : 0.01	h : 0.01	b : 0.01	
d : 0.25	e : 0.17	g : 0.15	2 : 0.10	c : 0.07	f : 0.04	i : 0.03	3 : 0.03	b : 0.03	] : 0.03	= : 0.01	h : 0.01	4 : 0.01	a : 0.01	
e : 0.18	2 : 0.17	g : 0.15	d : 0.10	f : 0.09	c : 0.07	] : 0.07	i : 0.03	b : 0.03	3 : 0.01	= : 0.01	h : 0.01	4 : 0.01	
g : 0.15	d : 0.15	f : 0.14	c : 0.10	2 : 0.10	] : 0.09	b : 0.04	e : 0.04	i : 0.03	a : 0.03	4 : 0.03	= : 0.01	h : 0.01	3 : 0.01	
d : 0.18	g : 0.15	f : 0.14	c : 0.12	e : 0.10	b : 0.07	2 : 0.04	] : 0.04	i : 0.03	4 : 0.03	= : 0.01	h : 0.01	3 : 0.01	
c : 0.15	f : 0.14	e : 0.14	d : 0.09	] : 0.07	2 : 0.06	4 : 0.06	b : 0.04	3 : 0.04	i : 0.03	= : 0.03	5 : 0.03	g : 0.03	F : 0.01	h : 0.01	: : 0.01	
f : 0.15	e : 0.14	c : 0.12	d : 0.10	] : 0.06	b : 0.06	3 : 0.06	4 : 0.06	2 : 0.04	i : 0.03	= : 0.03	5 : 0.03	g : 0.03	F : 0.01	a : 0.01	: : 0.01	

#score	1014.5614877449256
#seq	64
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_transcript_m3_run1.txt

#BEAR
iiiii!!cccqqqqqqqqccciiiiii	chr7:72861490-72861755(-)$1	265	228	255	17.1242
gggggg!!bbqqqqqqqqbb22ggggg	chr7:158277746-158278038(-)$1	292	85	112	15.9692
#a!!ffffffqqqqqqqqffffff22a	chr14:19658082-19658377(+)$1	295	134	161	15.5710
c[hhhhhhhhqqqqqqqqhhhhhhhhc	chr20:61452436-61452664(+)$1	228	39	66	14.0640
d[a[bb[cccqqqqqqqqcccbbaddd	chr19:39437030-39437285(-)$1	255	174	201	15.6599
"eeeee[cccqqqqqqqqccceeeeed	chr8:121820725-121821014(-)$1	289	95	122	16.0364
e[eeeee[bbqqqqqqqqbb]eeeeee	chr6:143382373-143382627(+)$1	254	110	137	15.4409
dddd"""cccqqqqqqqqccc333ddd	chr19:49514144-49514395(+)$1	251	124	151	16.2517
####ffffffqqqqqqqqffffff22d	chr11:2680278-2680554(-)$1	276	168	195	15.3492
cc$$$$$cccqqqqqqqqcccccc]ee	chr17:80151737-80152036(-)$1	299	178	205	15.7127
dddgggggggqqqqqqqqggggggg::	chr7:732860-733161(-)$1	301	207	234	14.2536
eeeee[bbbbqqqqqqqqbb]bb]eee	chr2:101494727-101494993(+)$1	266	231	258	14.6184
c!!eeeeebbqqqqqqqqbb]eeeee3	chr9:100818961-100819252(+)$1	291	87	114	15.5832
iiiiiiiiirrrrrrrrriiiiiiiii	chr13:114187820-114188154(+)$1	334	224	251	10.3790
cc[gggggggqqqqqqqqggggggg33	chr2:101482087-101482412(+)$1	325	176	203	16.4682
ee!!ccc[bbqqqqqqqqbb]ccc22e	chr8:94746584-94746916(-)$1	332	96	123	16.0769
ccc[ffffffqqqqqqqqffffff]cc	chr10:135215570-135215839(+)$1	269	200	227	15.7512
::ccc!!cccqqqqqqqqccc22cccD	chr17:74379033-74379293(+)$1	260	130	157	13.7498
fff"""ddddqqqqqqqqdddd333ff	chr4:770835-771112(-)$1	277	164	191	15.1637
eehhhhhhhhqqqqqqqqhhhhhhhh4	chr1:29508046-29508391(-)$1	345	165	192	13.8122
==========qqqqqqqq=========	chr19:35513090-35513349(+)$1	259	141	168	16.9796
dddccccccrrrrrrrrrccc4444cc	chr3:30722826-30723089(+)$1	263	38	65	10.0184
dd[gggggggqqqqqqqqggggggg]d	chr16:31719354-31719626(+)$1	272	242	269	16.1469
==========qqqqqqqq=========	chr9:139743573-139743849(+)$1	276	163	190	16.9796
!!ccc[ddddqqqqqqqqdddd]ccc2	chr11:65267983-65268209(+)$1	226	118	145	15.3318
$$a[bb[cccqqqqqqqqccc]bb]a5	chr20:25202788-25203077(+)$1	289	129	156	15.1630
[bb[ccc[bbqqqqqqqqbb]ccc]bb	chr6:30584571-30584873(-)$1	302	209	236	15.3823
a[ccc[ddddqqqqqqqqdddd]ccca	chr14:73569933-73570260(+)$1	327	176	203	15.4638
===bb!!bbaqqqqqqqqa]bb22bb8	chr6:154831054-154831316(-)$1	262	67	94	13.9151
fff!!a[cccqqqqqqqqccc]a22ff	chr3:197334214-197334560(-)$1	346	99	126	16.3359
:ccc[eeeeeqqqqqqqqeeeee22cc	chrX:20269210-20269480(-)$1	270	222	249	14.3017
dd!!bb[cccqqqqqqqqccc]bb22d	chr17:73201687-73202001(+)$1	314	145	172	15.9532
d[a!!eeeeeqqqqqqqqeeeee22a]	chr12:110025770-110026124(+)$1	354	59	86	15.4763
c[ffffffbbqqqqqqqqbb]ffffff	chr22:46685232-46685551(+)$1	319	141	168	15.0432
hhhccca[bbqqqqqqqqbb]a]ccc]	chr17:75428753-75429020(+)$1	267	7	34	15.3821
a[ddddddddqqqqqqqqdddd22ddd	chr9:127107003-127107331(+)$1	328	165	192	14.1510
gggg[eeeeerrrrrrrrreeeee]gg	chr3:13390080-13390343(-)$1	263	60	87	9.2783
eeeee!!cccqqqqqqqqccc22eeee	chr3:52323989-52324268(+)$1	279	102	129	16.0793
:iiiiiiiiiqqqqqqqqiiiiiiiii	chr11:85375448-85375725(-)$1	277	88	115	15.5898
ccc[ffffffqqqqqqqqffffffccc	chr16:75298138-75298376(-)$1	238	139	166	15.4669
eeeeeeee[aqqqqqqqqaeeeee22e	chr17:70531786-70532048(-)$1	262	75	102	15.0304
ggggg[ddddqqqqqqqqdddd]gggg	chr16:89588779-89589127(+)$1	348	252	279	15.4914
c[bb[ccc[aqqqqqqqqa]ccc]bbc	chr12:133360601-133360911(-)$1	310	70	97	15.0802
eeeee[ddddqqqqqqqqdddd>>>>>	chr9:116999160-116999402(+)$1	242	33	60	14.1006
$$$gggggggqqqqqqqqgggggggcc	chr2:74708850-74709109(-)$1	259	190	217	15.7794
[bb[ffffffqqqqqqqqffffff]bb	chr14:39735782-39736034(+)$1	252	62	89	14.7890
ddd$$$$$bbqqqqqqqqbbdddd]cc	chr16:24551000-24551261(+)$1	261	105	132	14.4369
eee####cccqqqqqqqqccc4444ee	chr22:24025810-24026016(-)$1	206	108	135	16.4764
ncccffffffqqqqqqqqffffffeee	chr1:53377136-53377420(-)$1	284	178	205	14.4689
[eeeee[cccqqqqqqqqccc]eeeee	chr6:138785214-138785613(-)$1	399	358	385	16.1692
ddddbb!!bbqqqqqqqqbb22bb]dd	chr8:141912221-141912536(-)$1	315	277	304	14.5092

#otherMatches

#Seq PSSM
UGGCUUGGCAGUAGGUAGUGUGGCCGG	chr7:72861490-72861755(-)$1	265	228	255	17.1242
GAGGGCAAGAGGAGCAAGUCGCGCUCU	chr7:158277746-158278038(-)$1	292	85	112	15.9692
AGAUCUAAGCAAGAUGGAGCUUGGUGC	chr14:19658082-19658377(+)$1	295	134	161	15.5710
GAUUGGGUUUGCAAAUAGAGGCCCAGC	chr20:61452436-61452664(+)$1	228	39	66	14.0640
GUGAGUGAGGAGCGGCACCCUGCCCCA	chr19:39437030-39437285(-)$1	255	174	201	15.6599
agucucagugucuucauccgcgagaug	chr8:121820725-121821014(-)$1	289	95	122	16.0364
UUGGAGGGGGACACCGAACUGCUUCUA	chr6:143382373-143382627(+)$1	254	110	137	15.4409
GAUCAAGUCAGAAGUCCGUGAGCAGAU	chr19:49514144-49514395(+)$1	251	124	151	16.2517
aacugaaucucaaagaguggauuuuac	chr11:2680278-2680554(-)$1	276	168	195	15.3492
GGUGCGCGAGUCCUUCAUCUCCCGAGG	chr17:80151737-80152036(-)$1	299	178	205	15.7127
cugaauugugcacuuuaauacaguuga	chr7:732860-733161(-)$1	301	207	234	14.2536
AGGCAUGGAGAGAUUUGGCUACUUUGU	chr2:101494727-101494993(+)$1	266	231	258	14.6184
gACCCAGACUGGUAGUGAGGCUUUGGA	chr9:100818961-100819252(+)$1	291	87	114	15.5832
GCCUGGCGAGGAAUUUUAUCGUCAGGC	chr13:114187820-114188154(+)$1	334	224	251	10.3790
CCUAUUUGGACCAUACUCUCUAAGUUC	chr2:101482087-101482412(+)$1	325	176	203	16.4682
CCGGAGGAUGACUUCAGGCACCCUAGG	chr8:94746584-94746916(-)$1	332	96	123	16.0769
ggcuggggcugggaccggggcCCCUGC	chr10:135215570-135215839(+)$1	269	200	227	15.7512
AGGUGCAGGACCCAUCAUUCCGACACG	chr17:74379033-74379293(+)$1	260	130	157	13.7498
guuuccuauaaaguucaauguacacag	chr4:770835-771112(-)$1	277	164	191	15.1637
CCGGGAGCGCGAUGUGGAGCGCUUCUU	chr1:29508046-29508391(-)$1	345	165	192	13.8122
UUAGGUGCACAGGGAGAGGUGUGCCUA	chr19:35513090-35513349(+)$1	259	141	168	16.9796
UUGCUGCCCUGUUACAUUGGGACUACA	chr3:30722826-30723089(+)$1	263	38	65	10.0184
AAGAUGGUGGUGUGGCCCCCAUCGUGU	chr16:31719354-31719626(+)$1	272	242	269	16.1469
CCUCGGUCGGCGGUACAAUUGGCUGAG	chr9:139743573-139743849(+)$1	276	163	190	16.9796
AGUGCAAUUUGGUGAUGAAGGUAGCAG	chr11:65267983-65268209(+)$1	226	118	145	15.3318
GAUGGGGCCUGGUGGAGGAGGACUGGG	chr20:25202788-25203077(+)$1	289	129	156	15.1630
CAGCCACCAGCCCAACCACUUGUGUCU	chr6:30584571-30584873(-)$1	302	209	236	15.3823
gaucgggaucgagagagagaUCGUGAC	chr14:73569933-73570260(+)$1	327	176	203	15.4638
CAUGGAACCCGUGACCAAGUGGAGCCC	chr6:154831054-154831316(-)$1	262	67	94	13.9151
GAGAAAUGACAACCUGAGGUCCUGCCU	chr3:197334214-197334560(-)$1	346	99	126	16.3359
auggaugccagaaggauauggcacacc	chrX:20269210-20269480(-)$1	270	222	249	14.3017
UCUAGGAGCCUGGGGUUCGGCGCUAUG	chr17:73201687-73202001(+)$1	314	145	172	15.9532
CAGUAGGAGCGUGGAACAGCUUCCUCG	chr12:110025770-110026124(+)$1	354	59	86	15.4763
UGAGGACGGGAACCCUGACCGCGUCCU	chr22:46685232-46685551(+)$1	319	141	168	15.0432
GAGGCCCUGGAAAUGGUGCCUGCGGCA	chr17:75428753-75429020(+)$1	267	7	34	15.3821
ACGCCCCUCCGUGGUGGAGGAGCAGGG	chr9:127107003-127107331(+)$1	328	165	192	14.1510
GGGGGAGGGAGUCCCACUGUUCCUGUU	chr3:13390080-13390343(-)$1	263	60	87	9.2783
CAUGUGGUCUGCAGAAGAGGAGGACGU	chr3:52323989-52324268(+)$1	279	102	129	16.0793
GAGACGGAGGAUAUGGACUUUCUGUCU	chr11:85375448-85375725(-)$1	277	88	115	15.5898
CAGUAGUGAUUAGGGAAUGUCACUCUG	chr16:75298138-75298376(-)$1	238	139	166	15.4669
AGUGGCAGAGACAGCCCACCUGCCCUG	chr17:70531786-70532048(-)$1	262	75	102	15.0304
GUGUCCGUGGUGGUUUGUCCGCAGGCG	chr16:89588779-89589127(+)$1	348	252	279	15.4914
CGCUGCUGGAAAAGGAACUGCAGGAGG	chr12:133360601-133360911(-)$1	310	70	97	15.0802
CUGGGCGGCUGUUCACCUGGCCAUUUC	chr9:116999160-116999402(+)$1	242	33	60	14.1006
UUUGGGAAGGCUGGGGUCUCUUCCUUC	chr2:74708850-74709109(-)$1	259	190	217	15.7794
GGCAGGGCGCACCGGCGCGUGCCCCGC	chr14:39735782-39736034(+)$1	252	62	89	14.7890
GAGAAGAAGCGUCAGGGAGCCUCGGCG	chr16:24551000-24551261(+)$1	261	105	132	14.4369
AGCUCAUGGCACAGCAAGGCCUCACGC	chr22:24025810-24026016(-)$1	206	108	135	16.4764
UGCAGGUAGGUUCUCUCUCCUGCCCCC	chr1:53377136-53377420(-)$1	284	178	205	14.4689
GUGAGGAUAGCUGAACACCUGACCUCG	chr6:138785214-138785613(-)$1	399	358	385	16.1692
ccaggaggcugaggcaggagaaucacu	chr8:141912221-141912536(-)$1	315	277	304	14.5092

#DB
(((((..(((........)))))))))	chr7:72861490-72861755(-)$1	1	228	255	17.1242
((((((..((........))..)))))	chr7:158277746-158278038(-)$1	1	85	112	15.9692
.(..((((((........))))))..)	chr14:19658082-19658377(+)$1	1	134	161	15.5710
(.((((((((........)))))))))	chr20:61452436-61452664(+)$1	1	39	66	14.0640
(.(.((.(((........)))))))))	chr19:39437030-39437285(-)$1	1	174	201	15.6599
.(((((.(((........)))))))))	chr8:121820725-121821014(-)$1	1	95	122	16.0364
(.(((((.((........)).))))))	chr6:143382373-143382627(+)$1	1	110	137	15.4409
((((...(((........)))...)))	chr19:49514144-49514395(+)$1	1	124	151	16.2517
....((((((........))))))..)	chr11:2680278-2680554(-)$1	1	168	195	15.3492
((.....(((........)))))).))	chr17:80151737-80152036(-)$1	1	178	205	15.7127
)))(((((((........)))))))..	chr7:732860-733161(-)$1	1	207	234	14.2536
(((((.((((........)).)).)))	chr2:101494727-101494993(+)$1	1	231	258	14.6184
(..(((((((........)).))))).	chr9:100818961-100819252(+)$1	1	87	114	15.5832
(((((((((.........)))))))))	chr13:114187820-114188154(+)$1	1	224	251	10.3790
((.(((((((........)))))))..	chr2:101482087-101482412(+)$1	1	176	203	16.4682
((..(((.((........)).)))..)	chr8:94746584-94746916(-)$1	1	96	123	16.0769
(((.((((((........)))))).))	chr10:135215570-135215839(+)$1	1	200	227	15.7512
..(((..(((........)))..))))	chr17:74379033-74379293(+)$1	1	130	157	13.7498
(((...((((........))))...))	chr4:770835-771112(-)$1	1	164	191	15.1637
((((((((((........)))))))).	chr1:29508046-29508391(-)$1	1	165	192	13.8122
((((((((((........)))))))))	chr19:35513090-35513349(+)$1	1	141	168	16.9796
(((((((((.........)))....))	chr3:30722826-30723089(+)$1	1	38	65	10.0184
((.(((((((........))))))).)	chr16:31719354-31719626(+)$1	1	242	269	16.1469
((((((((((........)))))))))	chr9:139743573-139743849(+)$1	1	163	190	16.9796
..(((.((((........)))).))).	chr11:65267983-65268209(+)$1	1	118	145	15.3318
..(.((.(((........))).)).).	chr20:25202788-25203077(+)$1	1	129	156	15.1630
.((.(((.((........)).))).))	chr6:30584571-30584873(-)$1	1	209	236	15.3823
(.(((.((((........)))).))))	chr14:73569933-73570260(+)$1	1	176	203	15.4638
(((((..(((........).))..)).	chr6:154831054-154831316(-)$1	1	67	94	13.9151
(((..(.(((........))).)..))	chr3:197334214-197334560(-)$1	1	99	126	16.3359
.(((.(((((........)))))..))	chrX:20269210-20269480(-)$1	1	222	249	14.3017
((..((.(((........))).))..)	chr17:73201687-73202001(+)$1	1	145	172	15.9532
(.(..(((((........)))))..).	chr12:110025770-110026124(+)$1	1	59	86	15.4763
(.((((((((........)).))))))	chr22:46685232-46685551(+)$1	1	141	168	15.0432
(((((((.((........)).).))).	chr17:75428753-75429020(+)$1	1	7	34	15.3821
(.((((((((........))))..)))	chr9:127107003-127107331(+)$1	1	165	192	14.1510
((((.(((((.........))))).))	chr3:13390080-13390343(-)$1	1	60	87	9.2783
(((((..(((........)))..))))	chr3:52323989-52324268(+)$1	1	102	129	16.0793
.(((((((((........)))))))))	chr11:85375448-85375725(-)$1	1	88	115	15.5898
(((.((((((........)))))))))	chr16:75298138-75298376(-)$1	1	139	166	15.4669
((((((((.(........))))))..)	chr17:70531786-70532048(-)$1	1	75	102	15.0304
(((((.((((........)))).))))	chr16:89588779-89589127(+)$1	1	252	279	15.4914
(.((.(((.(........).))).)))	chr12:133360601-133360911(-)$1	1	70	97	15.0802
(((((.((((........)))).....	chr9:116999160-116999402(+)$1	1	33	60	14.1006
...(((((((........)))))))))	chr2:74708850-74709109(-)$1	1	190	217	15.7794
.((.((((((........)))))).))	chr14:39735782-39736034(+)$1	1	62	89	14.7890
(((.....((........)))))).))	chr16:24551000-24551261(+)$1	1	105	132	14.4369
(((....(((........)))....))	chr22:24025810-24026016(-)$1	1	108	135	16.4764
.)))((((((........))))))(((	chr1:53377136-53377420(-)$1	1	178	205	14.4689
.(((((.(((........))).)))))	chr6:138785214-138785613(-)$1	1	358	385	16.1692
((((((..((........))..)).))	chr8:141912221-141912536(-)$1	1	277	304	14.5092

#PSSM
d : 0.17	c : 0.15	e : 0.15	g : 0.05	: : 0.05	= : 0.05	[ : 0.05	i : 0.03	# : 0.03	f : 0.03	$ : 0.03	a : 0.03	" : 0.01	! : 0.01	h : 0.01	n : 0.01	
e : 0.17	[ : 0.15	d : 0.13	c : 0.11	i : 0.05	g : 0.05	= : 0.05	! : 0.03	f : 0.03	$ : 0.03	b : 0.03	a : 0.01	# : 0.01	: : 0.01	h : 0.01	
e : 0.15	c : 0.13	d : 0.11	! : 0.07	i : 0.05	g : 0.05	h : 0.05	a : 0.05	f : 0.05	= : 0.05	b : 0.05	$ : 0.03	[ : 0.03	# : 0.01	
e : 0.15	g : 0.13	c : 0.13	[ : 0.11	! : 0.09	i : 0.05	d : 0.05	h : 0.03	# : 0.03	$ : 0.03	= : 0.03	b : 0.03	" : 0.01	f : 0.01	
e : 0.15	f : 0.13	c : 0.13	g : 0.11	b : 0.09	i : 0.05	[ : 0.05	h : 0.03	" : 0.03	$ : 0.03	= : 0.03	! : 0.03	d : 0.01	# : 0.01	
e : 0.15	f : 0.13	g : 0.09	[ : 0.09	c : 0.09	! : 0.07	b : 0.07	h : 0.03	" : 0.03	$ : 0.03	i : 0.03	= : 0.03	a : 0.01	d : 0.01	# : 0.01	
f : 0.13	! : 0.11	[ : 0.11	e : 0.11	d : 0.11	g : 0.07	c : 0.07	h : 0.03	$ : 0.03	i : 0.03	= : 0.03	" : 0.01	b : 0.01	a : 0.01	# : 0.01	
c : 0.27	f : 0.13	d : 0.11	e : 0.09	[ : 0.07	g : 0.07	! : 0.03	h : 0.03	b : 0.03	i : 0.03	= : 0.03	$ : 0.01	
c : 0.25	b : 0.21	f : 0.11	d : 0.11	g : 0.07	e : 0.05	h : 0.03	i : 0.03	= : 0.03	[ : 0.03	
c : 0.23	b : 0.19	f : 0.11	d : 0.11	g : 0.07	a : 0.05	e : 0.05	h : 0.03	r : 0.03	= : 0.03	i : 0.01	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
q : 0.94	r : 0.05	
c : 0.25	b : 0.19	f : 0.11	d : 0.11	g : 0.07	a : 0.05	h : 0.03	i : 0.03	= : 0.03	e : 0.03	r : 0.01	
c : 0.25	b : 0.19	f : 0.11	d : 0.11	g : 0.07	e : 0.07	h : 0.03	i : 0.03	= : 0.03	] : 0.03	
c : 0.27	] : 0.13	d : 0.13	f : 0.11	g : 0.07	e : 0.07	2 : 0.03	h : 0.03	i : 0.03	= : 0.03	b : 0.01	
f : 0.13	e : 0.13	d : 0.13	2 : 0.07	c : 0.07	g : 0.07	] : 0.07	i : 0.05	b : 0.05	h : 0.03	= : 0.03	4 : 0.03	3 : 0.01	a : 0.01	
e : 0.15	f : 0.13	g : 0.09	b : 0.09	c : 0.07	2 : 0.07	] : 0.07	i : 0.05	h : 0.03	3 : 0.03	= : 0.03	4 : 0.03	a : 0.01	> : 0.01	d : 0.01	
f : 0.13	e : 0.13	c : 0.13	g : 0.11	2 : 0.09	i : 0.05	b : 0.05	h : 0.03	3 : 0.03	] : 0.03	= : 0.03	4 : 0.03	a : 0.01	> : 0.01	d : 0.01	
2 : 0.15	] : 0.15	e : 0.13	g : 0.11	c : 0.09	i : 0.05	d : 0.05	h : 0.03	= : 0.03	4 : 0.03	b : 0.03	3 : 0.01	f : 0.01	> : 0.01	
c : 0.19	e : 0.17	2 : 0.09	d : 0.07	b : 0.07	i : 0.05	g : 0.05	f : 0.05	h : 0.03	= : 0.03	a : 0.03	: : 0.01	3 : 0.01	] : 0.01	> : 0.01	
e : 0.17	c : 0.15	d : 0.15	i : 0.05	g : 0.05	f : 0.05	a : 0.03	3 : 0.03	= : 0.03	b : 0.03	] : 0.03	: : 0.01	D : 0.01	4 : 0.01	2 : 0.01	5 : 0.01	8 : 0.01	> : 0.01	

#score	767.807739304269
#seq	51
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF222ULF_CSTF2_UTR_m3_run1.txt

#BEAR
e[cccqqqqqqqqccce	chr17:53400846-53401052(+)$1	206	178	195	14.0901
!!cccqqqqqqqqccc2	chr2:8868816-8869095(-)$1	279	61	78	13.9040
d[cccqqqqqqqqccc]	chr2:202001621-202001879(+)$1	258	47	64	13.9619
eeeeeqqqqqqqqeeee	chr2:17722040-17722330(+)$1	290	71	88	13.6524
d[a[aqqqqqqqqa]a]	chr2:27665137-27665391(+)$1	254	138	155	13.5926
gggggqqqqqqqqgggg	chr2:11320727-11320995(-)$1	268	29	46	13.4840
"""bbqqqqqqqqbb33	chr5:170837807-170838117(+)$1	310	224	241	12.1763
eeeeeqqqqqqqqeeee	chr20:30959944-30960213(+)$1	269	149	166	13.6524
eeeeeqqqqqqqqeeee	chr1:11085455-11085737(+)$1	282	0	17	13.6524
:ddddqqqqqqqqdddd	chr11:2152569-2152782(-)$1	213	111	128	13.0839
cccccqqqqqqqqccc:	chr4:763370-763773(-)$1	403	240	257	12.8907
!ddddqqqqqqqqdddd	chr3:50156296-50156555(+)$1	259	40	57	14.0035
"ddddqqqqqqqqdddd	chr16:87731539-87731835(-)$1	296	269	286	13.9170
c[cccqqqqqqqqccc]	chr4:6885008-6885302(+)$1	294	28	45	14.0696
ee!!aqqqqqqqqa22e	chr10:3818542-3818792(-)$1	250	157	174	13.1297
"ddddqqqqqqqqdddd	chr5:151190820-151191056(+)$1	236	112	129	13.9170
:ddddqqqqqqqqdddd	chr19:18888666-18888945(+)$1	279	108	125	13.0839
cc[bbqqqqqqqqbbcc	chr17:26988771-26989098(-)$1	327	203	220	12.4537
fffffqqqqqqqqffff	chr12:58176265-58176562(+)$1	297	208	225	12.4493
hhhhhqqqqqqqqhhhh	chr22:31673270-31673521(+)$1	251	169	186	12.5201
ggg[aqqqqqqqqa]gg	chr20:55953413-55953695(+)$1	282	22	39	13.6836
c[cccqqqqqqqqcccc	chr2:131907320-131907627(+)$1	307	16	33	13.9763
""cccqqqqqqqqccc6	chr16:2821324-2821616(+)$1	292	131	148	13.3272
eeeeeqqqqqqqqeeee	chr6:43304381-43304690(-)$1	309	237	254	13.6524
[bb[aqqqqqqqqa]bb	chr4:17487977-17488267(-)$1	290	263	280	12.5512
gggggqqqqqqqqgggg	chr2:38791085-38791344(-)$1	259	31	48	13.4840
c[cccqqqqqqqqccc]	chr11:57585855-57586133(+)$1	278	126	143	14.0696
eecccqqqqqqqqccc]	chr17:66510874-66511201(+)$1	327	215	232	14.0416
hhhhhqqqqqqqqhhhh	chr22:31673237-31673470(+)$1	233	202	219	12.5201
ddd[aqqqqqqqqa]dd	chr6:30710209-30710539(-)$1	330	228	245	13.7641
fffffqqqqqqqqffff	chr14:39819811-39820078(+)$1	267	125	142	12.4493
hhhhhqqqqqqqqhhhh	chr10:113912770-113913105(-)$1	335	134	151	12.5201
:ddddqqqqqqqqdddd	chr11:2152502-2152709(-)$1	207	38	55	13.0839
eeeeeqqqqqqqqeeee	chr9:123941334-123941659(-)$1	325	245	262	13.6524
!ddddqqqqqqqqdddd	chr2:178087690-178087928(+)$1	238	22	39	14.0035
dddbbqqqqqqqqbb]d	chr16:16243282-16243518(-)$1	236	130	147	12.4450
:ddddqqqqqqqqdddd	chr4:760910-761161(-)$1	251	188	205	13.0839
:ddddqqqqqqqqdddd	chr18:649650-649939(-)$1	289	1	18	13.0839
eeeeeqqqqqqqqeeee	chr2:223806897-223807155(+)$1	258	37	54	13.6524
gggggqqqqqqqqgggg	chr7:64450532-64450842(-)$1	310	25	42	13.4840
:ddddqqqqqqqqdddd	chr11:2152605-2152815(-)$1	210	144	161	13.0839
eeeeeqqqqqqqqeeee	chr20:35155993-35156295(-)$1	302	6	23	13.6524
#ddddqqqqqqqqdddd	chr17:27050862-27051136(+)$1	274	221	238	13.8864
"ddddqqqqqqqqdddd	chrX:100650690-100650954(+)$1	264	79	96	13.9170
:ddddqqqqqqqqdddd	chr11:2153200-2153405(-)$1	205	37	54	13.0839
eeeeeqqqqqqqqeeee	chr6:74227054-74227337(-)$1	283	15	32	13.6524
e[cccqqqqqqqqccc]	chr20:42825350-42825638(-)$1	288	36	53	14.0989
ggg[aqqqqqqqqa]gg	chr19:49995036-49995291(+)$1	255	162	179	13.6836
eeeeeqqqqqqqqeeee	chr2:223806955-223807184(+)$1	229	81	98	13.6524
c[cccqqqqqqqqccc]	chr5:122344802-122345107(+)$1	305	150	167	14.0696
:ddddqqqqqqqqdddd	chr6:138203619-138203910(+)$1	291	31	48	13.0839
hhhhhqqqqqqqqhhhh	chr4:4421025-4421293(-)$1	268	100	117	12.5201
fffffqqqqqqqqffff	chr22:18185109-18185372(+)$1	263	145	162	12.4493
[bb[aqqqqqqqqa]bb	chr11:75116640-75116907(+)$1	267	242	259	12.5512
fffffqqqqqqqqffff	chr19:42375392-42375661(+)$1	269	11	28	12.4493
eecccqqqqqqqqccc4	chr11:62433155-62433419(+)$1	264	172	189	13.9231
eee[aqqqqqqqqa]ee	chr12:111157436-111157703(-)$1	267	38	55	13.8322
eeeeeqqqqqqqqeeee	chr10:21783244-21783514(-)$1	270	27	44	13.6524
[ddddqqqqqqqqdddd	chr7:138269987-138270268(+)$1	281	43	60	13.9569
b[cccqqqqqqqqcccb	chr4:760961-761200(-)$1	239	109	126	13.4902

#otherMatches

#Seq PSSM
ACUGGCUGCCUCUCCAU	chr17:53400846-53401052(+)$1	206	178	195	14.0901
CUAUGAUGAUUCACAUU	chr2:8868816-8869095(-)$1	279	61	78	13.9040
CAGCCAUGACCAGGGCA	chr2:202001621-202001879(+)$1	258	47	64	13.9619
uuaaauauauauuuuua	chr2:17722040-17722330(+)$1	290	71	88	13.6524
CGGGAUGAGGCGCUGCA	chr2:27665137-27665391(+)$1	254	138	155	13.5926
UGUACAUACAUGAGUGC	chr2:11320727-11320995(-)$1	268	29	46	13.4840
UUUUCAUCAUAAGGAUU	chr5:170837807-170838117(+)$1	310	224	241	12.1763
AUUGAAUAUUUGCUCAG	chr20:30959944-30960213(+)$1	269	149	166	13.6524
GAUUUGUUUUUAAAAAU	chr1:11085455-11085737(+)$1	282	0	17	13.6524
augcgcacacacacgca	chr11:2152569-2152782(-)$1	213	111	128	13.0839
GAGUGGACAUUUACACG	chr4:763370-763773(-)$1	403	240	257	12.8907
AGAUUUUCAGUCUAGUU	chr3:50156296-50156555(+)$1	259	40	57	14.0035
GGGUCCUGCGUAUGGCC	chr16:87731539-87731835(-)$1	296	269	286	13.9170
CUGAUUUUUUUUUGUUU	chr4:6885008-6885302(+)$1	294	28	45	14.0696
AGAACAACUCACCGACC	chr10:3818542-3818792(-)$1	250	157	174	13.1297
CGACAUAAAGCCUUGUC	chr5:151190820-151191056(+)$1	236	112	129	13.9170
UUCUGAGCACACACAGA	chr19:18888666-18888945(+)$1	279	108	125	13.0839
GAUGGCUGUAGUACCUC	chr17:26988771-26989098(-)$1	327	203	220	12.4537
CACCAUACUCGUUUGGU	chr12:58176265-58176562(+)$1	297	208	225	12.4493
UAGAGUUGAAAUUUUCU	chr22:31673270-31673521(+)$1	251	169	186	12.5201
UGUACGUGUUAGAGAAU	chr20:55953413-55953695(+)$1	282	22	39	13.6836
GAGAACUGAUUUUUUCC	chr2:131907320-131907627(+)$1	307	16	33	13.9763
GCCACUUCCCUCCGUGA	chr16:2821324-2821616(+)$1	292	131	148	13.3272
UCUGGGAAAAACACCAG	chr6:43304381-43304690(-)$1	309	237	254	13.6524
CUGCCUUGGACAUGUCA	chr4:17487977-17488267(-)$1	290	263	280	12.5512
GCAUGUUAGAAUUUAUG	chr2:38791085-38791344(-)$1	259	31	48	13.4840
GUUACUUCCUUAUGUAU	chr11:57585855-57586133(+)$1	278	126	143	14.0696
AGAUAUUCUUCAUUGUG	chr17:66510874-66511201(+)$1	327	215	232	14.0416
UAGAGUUGAAAUUUUCU	chr22:31673237-31673470(+)$1	233	202	219	12.5201
CCCGGAAGGUGAGUGGG	chr6:30710209-30710539(-)$1	330	228	245	13.7641
UUGAGGUGCAAAACUCA	chr14:39819811-39820078(+)$1	267	125	142	12.4493
CACAGAAAUGUAGCUGU	chr10:113912770-113913105(-)$1	335	134	151	12.5201
augcgcacacacacgca	chr11:2152502-2152709(-)$1	207	38	55	13.0839
CACAGCUUUAUUCUUGU	chr9:123941334-123941659(-)$1	325	245	262	13.6524
UUCAAACUGGUUGUUGA	chr2:178087690-178087928(+)$1	238	22	39	14.0035
gcaguuuuaucacacau	chr16:16243282-16243518(-)$1	236	130	147	12.4450
CGGCUUCCCUCCUAGCC	chr4:760910-761161(-)$1	251	188	205	13.0839
AAUUCUACUUACUGGAU	chr18:649650-649939(-)$1	289	1	18	13.0839
UAAGAAGUUGAGAUCUU	chr2:223806897-223807155(+)$1	258	37	54	13.6524
cccugucuuuguucagg	chr7:64450532-64450842(-)$1	310	25	42	13.4840
augcgcacacacacgca	chr11:2152605-2152815(-)$1	210	144	161	13.0839
GGCUGAGGACUGACGGC	chr20:35155993-35156295(-)$1	302	6	23	13.6524
UGAUCAUUCCAGAGAUC	chr17:27050862-27051136(+)$1	274	221	238	13.8864
UGAGUUUAUGUUCACUU	chrX:100650690-100650954(+)$1	264	79	96	13.9170
AAAAGCACUCAUACUUU	chr11:2153200-2153405(-)$1	205	37	54	13.0839
UAAAAUCAGUACUUUUU	chr6:74227054-74227337(-)$1	283	15	32	13.6524
GAAGACAUCUCUUUCUG	chr20:42825350-42825638(-)$1	288	36	53	14.0989
GGAGCAAGGAAAGGGUC	chr19:49995036-49995291(+)$1	255	162	179	13.6836
AUAGCAAGAGAGGGUUA	chr2:223806955-223807184(+)$1	229	81	98	13.6524
UCUGUUUacacacacac	chr5:122344802-122345107(+)$1	305	150	167	14.0696
UACAUAUUCAUCGAUGU	chr6:138203619-138203910(+)$1	291	31	48	13.0839
UCAAUGAGUCUAAGUUG	chr4:4421025-4421293(-)$1	268	100	117	12.5201
gugucuaauugcuggca	chr22:18185109-18185372(+)$1	263	145	162	12.4493
UGUGUGAUAGAGAAGGC	chr11:75116640-75116907(+)$1	267	242	259	12.5512
CAUCUUUUCCCACAGGU	chr19:42375392-42375661(+)$1	269	11	28	12.4493
GGUCGAACUUACCCGAA	chr11:62433155-62433419(+)$1	264	172	189	13.9231
GUUGAUGGCAUAUUGAA	chr12:111157436-111157703(-)$1	267	38	55	13.8322
AGCUGACUUUUCCCAGC	chr10:21783244-21783514(-)$1	270	27	44	13.6524
GAAAGGAAAUAGACUUU	chr7:138269987-138270268(+)$1	281	43	60	13.9569
CUGUUUAUUCUCUAAUG	chr4:760961-761200(-)$1	239	109	126	13.4902

#DB
(.(((........))))	chr17:53400846-53401052(+)$1	1	178	195	14.0901
..(((........))).	chr2:8868816-8869095(-)$1	1	61	78	13.9040
(.(((........))).	chr2:202001621-202001879(+)$1	1	47	64	13.9619
(((((........))))	chr2:17722040-17722330(+)$1	1	71	88	13.6524
(.(.(........).).	chr2:27665137-27665391(+)$1	1	138	155	13.5926
(((((........))))	chr2:11320727-11320995(-)$1	1	29	46	13.4840
...((........))..	chr5:170837807-170838117(+)$1	1	224	241	12.1763
(((((........))))	chr20:30959944-30960213(+)$1	1	149	166	13.6524
(((((........))))	chr1:11085455-11085737(+)$1	1	0	17	13.6524
.((((........))))	chr11:2152569-2152782(-)$1	1	111	128	13.0839
))(((........))).	chr4:763370-763773(-)$1	1	240	257	12.8907
.((((........))))	chr3:50156296-50156555(+)$1	1	40	57	14.0035
.((((........))))	chr16:87731539-87731835(-)$1	1	269	286	13.9170
(.(((........))).	chr4:6885008-6885302(+)$1	1	28	45	14.0696
((..(........)..)	chr10:3818542-3818792(-)$1	1	157	174	13.1297
.((((........))))	chr5:151190820-151191056(+)$1	1	112	129	13.9170
.((((........))))	chr19:18888666-18888945(+)$1	1	108	125	13.0839
((.((........))))	chr17:26988771-26989098(-)$1	1	203	220	12.4537
(((((........))))	chr12:58176265-58176562(+)$1	1	208	225	12.4493
(((((........))))	chr22:31673270-31673521(+)$1	1	169	186	12.5201
(((.(........).))	chr20:55953413-55953695(+)$1	1	22	39	13.6836
(.(((........))))	chr2:131907320-131907627(+)$1	1	16	33	13.9763
..(((........))).	chr16:2821324-2821616(+)$1	1	131	148	13.3272
(((((........))))	chr6:43304381-43304690(-)$1	1	237	254	13.6524
.((.(........).))	chr4:17487977-17488267(-)$1	1	263	280	12.5512
(((((........))))	chr2:38791085-38791344(-)$1	1	31	48	13.4840
(.(((........))).	chr11:57585855-57586133(+)$1	1	126	143	14.0696
(((((........))).	chr17:66510874-66511201(+)$1	1	215	232	14.0416
(((((........))))	chr22:31673237-31673470(+)$1	1	202	219	12.5201
(((.(........).))	chr6:30710209-30710539(-)$1	1	228	245	13.7641
(((((........))))	chr14:39819811-39820078(+)$1	1	125	142	12.4493
(((((........))))	chr10:113912770-113913105(-)$1	1	134	151	12.5201
.((((........))))	chr11:2152502-2152709(-)$1	1	38	55	13.0839
(((((........))))	chr9:123941334-123941659(-)$1	1	245	262	13.6524
.((((........))))	chr2:178087690-178087928(+)$1	1	22	39	14.0035
(((((........)).)	chr16:16243282-16243518(-)$1	1	130	147	12.4450
.((((........))))	chr4:760910-761161(-)$1	1	188	205	13.0839
.((((........))))	chr18:649650-649939(-)$1	1	1	18	13.0839
(((((........))))	chr2:223806897-223807155(+)$1	1	37	54	13.6524
(((((........))))	chr7:64450532-64450842(-)$1	1	25	42	13.4840
.((((........))))	chr11:2152605-2152815(-)$1	1	144	161	13.0839
(((((........))))	chr20:35155993-35156295(-)$1	1	6	23	13.6524
.((((........))))	chr17:27050862-27051136(+)$1	1	221	238	13.8864
.((((........))))	chrX:100650690-100650954(+)$1	1	79	96	13.9170
.((((........))))	chr11:2153200-2153405(-)$1	1	37	54	13.0839
(((((........))))	chr6:74227054-74227337(-)$1	1	15	32	13.6524
(.(((........))).	chr20:42825350-42825638(-)$1	1	36	53	14.0989
(((.(........).))	chr19:49995036-49995291(+)$1	1	162	179	13.6836
(((((........))))	chr2:223806955-223807184(+)$1	1	81	98	13.6524
(.(((........))).	chr5:122344802-122345107(+)$1	1	150	167	14.0696
.((((........))))	chr6:138203619-138203910(+)$1	1	31	48	13.0839
(((((........))))	chr4:4421025-4421293(-)$1	1	100	117	12.5201
(((((........))))	chr22:18185109-18185372(+)$1	1	145	162	12.4493
.((.(........).))	chr11:75116640-75116907(+)$1	1	242	259	12.5512
(((((........))))	chr19:42375392-42375661(+)$1	1	11	28	12.4493
(((((........))).	chr11:62433155-62433419(+)$1	1	172	189	13.9231
(((.(........).))	chr12:111157436-111157703(-)$1	1	38	55	13.8322
(((((........))))	chr10:21783244-21783514(-)$1	1	27	44	13.6524
.((((........))))	chr7:138269987-138270268(+)$1	1	43	60	13.9569
(.(((........))))	chr4:760961-761200(-)$1	1	109	126	13.4902

#PSSM
e : 0.26	: : 0.13	c : 0.09	g : 0.08	" : 0.08	d : 0.06	f : 0.06	h : 0.06	! : 0.05	[ : 0.05	# : 0.01	b : 0.01	
d : 0.28	e : 0.23	[ : 0.15	g : 0.08	f : 0.06	h : 0.06	" : 0.03	c : 0.03	b : 0.03	! : 0.01	
d : 0.28	c : 0.21	e : 0.18	g : 0.08	f : 0.06	h : 0.06	b : 0.03	a : 0.01	" : 0.01	! : 0.01	[ : 0.01	
d : 0.24	c : 0.21	e : 0.16	[ : 0.11	f : 0.06	h : 0.06	g : 0.05	b : 0.05	! : 0.01	
d : 0.24	c : 0.21	e : 0.16	a : 0.13	f : 0.06	h : 0.06	g : 0.05	b : 0.05	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.24	c : 0.21	e : 0.16	a : 0.13	f : 0.06	h : 0.06	g : 0.05	b : 0.05	
d : 0.24	c : 0.21	e : 0.16	] : 0.11	f : 0.06	h : 0.06	g : 0.05	b : 0.05	2 : 0.01	
d : 0.26	c : 0.23	e : 0.18	g : 0.08	f : 0.06	h : 0.06	b : 0.03	a : 0.01	3 : 0.01	2 : 0.01	] : 0.01	
d : 0.28	e : 0.21	] : 0.11	g : 0.08	f : 0.06	h : 0.06	b : 0.05	c : 0.03	2 : 0.01	3 : 0.01	: : 0.01	6 : 0.01	4 : 0.01	

#score	802.9046749892224
#seq	60
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF803GSP_RPS11_CDS_m2_run1.txt

#BEAR
ccc####dddd[a[eeeeennnnneeeee]adddd44	chr6:26204967-26205210(+)$1	243	99	136	23.5727
cccc::dddd!!bb####annnnna4444bb22dddd	chr2:54197781-54198048(-)$1	267	27	64	24.0639
hhhhh[ddddeeeee[cccnnnnnccc]eeeee]ddd	chr1:22263547-22263814(-)$1	267	10	47	22.2455

#otherMatches

#Seq PSSM
CGUGAUUCGUGAUGCUGUGACUUACACGGAGCACGCC	chr6:26204967-26205210(+)$1	243	99	136	23.5727
GCCGCAGGGCGACGAAGACGCGGAGGAGGCGGAGCCC	chr2:54197781-54198048(-)$1	267	27	64	24.0639
cgcugucccgagcuggccggcgagcgggcggcugcgg	chr1:22263547-22263814(-)$1	267	10	47	22.2455

#DB
(((....((((.(.(((((.....))))).)))))..	chr6:26204967-26205210(+)$1	1	99	136	23.5727
))))..((((..((....(.....)....))..))))	chr2:54197781-54198048(-)$1	1	27	64	24.0639
(((((.(((((((((.(((.....))).))))).)))	chr1:22263547-22263814(-)$1	1	10	47	22.2455

#PSSM
c : 0.66	h : 0.33	
c : 0.66	h : 0.33	
c : 0.66	h : 0.33	
# : 0.33	c : 0.33	h : 0.33	
# : 0.33	: : 0.33	h : 0.33	
# : 0.33	: : 0.33	[ : 0.33	
d : 0.66	# : 0.33	
d : 1.00	
d : 1.00	
d : 1.00	
d : 0.33	! : 0.33	e : 0.33	
[ : 0.33	! : 0.33	e : 0.33	
a : 0.33	b : 0.33	e : 0.33	
[ : 0.33	b : 0.33	e : 0.33	
e : 0.66	# : 0.33	
e : 0.33	# : 0.33	[ : 0.33	
e : 0.33	# : 0.33	c : 0.33	
e : 0.33	# : 0.33	c : 0.33	
e : 0.33	a : 0.33	c : 0.33	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
e : 0.33	a : 0.33	c : 0.33	
e : 0.33	4 : 0.33	c : 0.33	
e : 0.33	4 : 0.33	c : 0.33	
e : 0.33	4 : 0.33	] : 0.33	
e : 0.66	4 : 0.33	
] : 0.33	b : 0.33	e : 0.33	
a : 0.33	b : 0.33	e : 0.33	
d : 0.33	2 : 0.33	e : 0.33	
d : 0.33	2 : 0.33	e : 0.33	
d : 0.66	] : 0.33	
d : 1.00	
d : 0.66	4 : 0.33	
d : 0.66	4 : 0.33	

#score	69.88224890189997
#seq	3
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_UTR_m3_run2.txt

#BEAR
iiiiiiiii[bb[ddddoooooodddd]bb333iiiiiii	chr11:64894842-64895102(-)$1	260	152	192	16.0418
============[a[bboooooobb]a]============	chr6:33172040-33172253(+)$1	213	50	90	20.4384
ggggggg####ffffffooooooffffff4444ggggggg	chr1:92146117-92146398(-)$1	281	156	196	15.7858
!!eeeee!!a[ccccccooooooccc]ccc]a333eeeee	chr1:161192664-161192886(-)$1	222	51	91	16.2702
gggggg[dddd"""cccooooooccc4444dddd]ggggg	chr5:177022684-177022947(+)$1	263	47	87	16.0386
eeeee[a"""a[ffffffnnnnnffffff]a333aeeeee	chr22:24953531-24953801(+)$1	270	169	209	12.6262
==="""bb[a[gggggggnnnnnggggggg]a]bb333==	chr17:53470265-53470527(-)$1	262	181	221	13.7353
gggg"""bb[dddd[bboooooobbdddd]bb22gggggg	chr4:1810300-1810568(+)$1	268	137	177	15.8286
==========="""cccpppppppccc333==========	chr8:22477445-22477745(+)$1	300	51	91	13.8634
bb[a[ffffff"""cccooooooccc]ffffff]a]bbee	chr17:79976815-79977049(-)$1	234	68	108	14.1452
======!!dddd!!ddddmmmmdddd22dddd4444====	chr22:22114805-22115062(-)$1	257	64	104	12.4069
bb[ccc####ccc!!bboooooobb22ccc55555ccc33	chr1:9789073-9789318(-)$1	245	195	235	13.2952
gggg!!bb!!a[bb[bbmmmmbbbb]a22bb]ggggggge	chr9:117073369-117073620(+)$1	251	146	186	12.1640
i==========[bb[cccmmmmccc]bb]==========c	chr12:12875017-12875349(+)$1	332	217	257	15.4278
++iiiiiiiiia!!cccooooooccc22a]iiiiiiiii>	chr10:102744484-102744780(+)$1	296	196	236	16.5246
cc!!dddd####eeeeeooooooeeeee333dddd22ccc	chr2:27599784-27600038(+)$1	254	87	127	13.5917
d!!===========!!bbmmmmbb22===========333	chr1:29652695-29652997(+)$1	302	237	277	15.5524
==========="""a[bbnnnnnbb]a===========]c	chr2:54896424-54896737(+)$1	313	269	309	17.6353
[ccc"""eeeee"""bb[bblllbb]bb333eeeeeccc]	chr13:20978058-20978352(-)$1	294	237	277	12.5492
c!!a"""==========oooooo==========22a22cc	chr22:38203081-38203318(+)$1	237	118	158	18.0959
gggg"""bb[dddd[bboooooobbdddd]bb22gggggg	chr4:1810240-1810500(+)$1	260	197	237	15.8286
Feeeee!!bb[ccc[cccooooooccc]cccbb]eeeee:	chr12:56547598-56547901(+)$1	303	252	292	12.6955
eee####==========oooooo==========22eeeee	chr17:7474858-7475137(+)$1	279	76	116	17.4669
ggggggg####ffffffooooooffffff4444ggggggg	chr1:92146063-92146317(-)$1	254	75	115	15.7858
[dddd[dddd"""ddddoooooodddd]dddddddd]bb]	chr17:66528676-66528952(+)$1	276	213	253	12.3085
Cddddffffff!!a[bboooooobb]a22ffffff]dddd	chr19:12810071-12810333(-)$1	262	139	179	13.1456
cc!!ccc!!ccc[a!!ccclllccc22a]ccc]cccccc:	chr16:30103600-30103915(-)$1	315	89	129	13.5138
[ccc$$$$$==========mmmm==========4444ccc	chr5:52781895-52782183(+)$1	288	54	94	14.3931
::a!!bb[gggggggbboooooobb22ggggggg]bb22a	chr17:80272945-80273246(-)$1	301	129	169	13.2129
ccc[ffffff$$$$$bboooooobb4444ffffffccc22	chr2:43450143-43450430(-)$1	287	225	265	14.3815
c!!==========!!ddddllldddd==========22cc	chr19:13054974-13055215(+)$1	241	104	144	15.4156
cc!!eeeee####ccc[bbmmmmbb]ccc4444eeeeecc	chr6:166733262-166733580(-)$1	318	74	114	12.6343
ccc!!cccccc[ccccccmmmmccc]cccccc]cccccc]	chr8:144898487-144898746(-)$1	259	16	56	13.0319
cc!!ccc!!ccc[a!!ccclllccc22a]ccc]cccccc:	chr16:30103735-30103996(-)$1	261	170	210	13.5138
e####ccc!!gggggggooooooggggggg4444ccc444	chr6:17615408-17615679(-)$1	271	63	103	16.2221
effffff"""dddd[cccnnnnnccc]dddd333ffffff	chr1:234742440-234742772(-)$1	332	150	190	12.6296
:=========="""ddddnnnnndddd22==========E	chr1:110943840-110944115(-)$1	275	227	267	14.3000
eeeee[bb[ccc!!cccoooooocccccc]bb]eeeee22	chr19:17342696-17342967(-)$1	271	72	112	15.0141
ddd[ffffff[ccc[cccooooooccc]ccc]ffffff]d	chr19:54379338-54379607(+)$1	269	15	55	13.5173
c[eeeee"""eeeee[bbnnnnnbb]eeeeeeeeee]ccc	chr20:35869812-35870034(+)$1	222	78	118	12.1794
========[eeeee[cccnnnnnccceeeee333======	chr1:6683613-6683967(+)$1	354	35	75	15.4351
=========="""ddddoooooodddd===========hh	chr20:61303392-61303649(+)$1	257	57	97	18.1162
iiiiiii"""dddd[bboooooobb]ddddiiiiiiiii:	chr17:39979067-39979335(+)$1	268	122	162	16.8486
dddd[bb!!eeeee[bboooooobbeeeeebb]ddddeee	chr2:10580496-10580748(-)$1	252	27	67	13.6673
FFFF:bb[iiiiiiiiiooooooiiiiiiiii]bbeeeee	chr17:17715343-17715615(-)$1	272	62	102	12.4865
dd:==========a[bboooooobb]a]==========::	chr1:33789725-33789999(-)$1	274	207	247	16.7662
c[ggggggg[dddd[bbnnnnnbbdddd]gggggggccc]	chr10:73576902-73577199(-)$1	297	152	192	13.1359
[ggggggg[==========mmmm==========22ggggg	chr11:62392231-62392475(-)$1	244	71	111	15.2003
!!ccc[eeeee####ddddllldddd4444eeeee]cccf	chr15:75136531-75136800(-)$1	269	157	197	11.8945

#otherMatches

#Seq PSSM
GGUCUUUCCAGUUUAGAAAAGGCUCUGUGCCAAGGAGGGA	chr11:64894842-64895102(-)$1	260	152	192	16.0418
GGAGAGGGUUAGUUGGUAUUCUCAUGGCCUGAUUUUUUUU	chr6:33172040-33172253(+)$1	213	50	90	20.4384
GGGUGAGUCCUAUGUGAUUUUUUUCAUGUUUGUUUUAUCU	chr1:92146117-92146398(-)$1	281	156	196	15.7858
UUGGUUCGGAGACAGGCAAAGGAGCCAUGUGUGGAGAGCC	chr1:161192664-161192886(-)$1	222	51	91	16.2702
GGGGGAGGGGAAUGGGCAGGCAAGCCAGUCUUCUGUCUUC	chr5:177022684-177022947(+)$1	263	47	87	16.0386
GUGAGACGAACACCGGUGAGGUAUAUCGGGGGAAGCUCAU	chr22:24953531-24953801(+)$1	270	169	209	12.6262
GAAUUCUUGGUUUGAUGAUAACCUUAUUAAUUGAAAUUUU	chr17:53470265-53470527(-)$1	262	181	221	13.7353
GGGCAGCUGUCCCUUGCUUGCCUGCAGGGCCAUGGCUCAG	chr4:1810300-1810568(+)$1	268	137	177	15.8286
UUUCUCCUGUCCUCUUCCAGUUUAGAAUAAGACAGGGGAG	chr8:22477445-22477745(+)$1	300	51	91	13.8634
CUGAAGGAUUUGGAGUUGAUUCAAACAAGAUCUCUGGGAG	chr17:79976815-79977049(-)$1	234	68	108	14.1452
AGAGCACUCAAGAAAGUUCUGAAACUGCUUUGUAUCUGCU	chr22:22114805-22115062(-)$1	257	64	104	12.4069
GAAAGUGUAUCCGCUACAAUAAAGUUCUGGUUCUAACUAA	chr1:9789073-9789318(-)$1	245	195	235	13.2952
UGGGAAGCGGCGAGAUCCUCGGGCUGGGGGUGCCCACGUU	chr9:117073369-117073620(+)$1	251	146	186	12.1640
GUAAUGUGUGAAAAAGAUGCCAAUUAUUGUUACACAUUAA	chr12:12875017-12875349(+)$1	332	217	257	15.4278
AUGCACAUGUGGUAACACACACCUGUAUCACACAUGUGCU	chr10:102744484-102744780(+)$1	296	196	236	16.5246
AUAUCUCCCUCUGGGCCGCUUCUGGCCUCUUGGAGCCAUG	chr2:27599784-27600038(+)$1	254	87	127	13.5917
GCCUCACUGGCCUGUCCUGCUCAGCUUGGGCCAGUGACAA	chr1:29652695-29652997(+)$1	302	237	277	15.5524
GCUGGGCCUGAACAGGGAGGUGGUCGCUCAGGCCUGGUGC	chr2:54896424-54896737(+)$1	313	269	309	17.6353
GUAGUCUGCCCGUCACUUUGGAUCAUAGCCCUGGGCCUGG	chr13:20978058-20978352(-)$1	294	237	277	12.5492
UGUGUGCAUGUGUGUGUUUGUGUAUAUAUACAUAUCUAGG	chr22:38203081-38203318(+)$1	237	118	158	18.0959
GGGCAGCUGUCCCUUGCUUGCCUGCAGGGCCAUGGCUCAG	chr4:1810240-1810500(+)$1	260	197	237	15.8286
CUCCAGUCGAUCUCUCCAAAGUGGUGGUGAGUCUCUGGAA	chr12:56547598-56547901(+)$1	303	252	292	12.6955
AAUUUCUGUAUUUUUUUUUCUUUGAGAGAAUACUUGUUGA	chr17:7474858-7475137(+)$1	279	76	116	17.4669
GGGUGAGUCCUAUGUGAUUUUUUUCAUGUUUGUUUUAUCU	chr1:92146063-92146317(-)$1	254	75	115	15.7858
UGAAAUAAUUUAAAUUCUUAAAUGAAUCAGUUUUUCUUCC	chr17:66528676-66528952(+)$1	276	213	253	12.3085
CAGGGCUGUGGACCCAGACUGGCCUUGAGCCACAGUCCCU	chr19:12810071-12810333(-)$1	262	139	179	13.1456
GGCUGGCUUGGAUCUCGUUUUUAACCCGUUCCUGCCCCAC	chr16:30103600-30103915(-)$1	315	89	129	13.5138
GUCCAUACUGUAAAUAAGUGUAUGCUUAUUUAUUUGGGGG	chr5:52781895-52782183(+)$1	288	54	94	14.3931
CCCUCACCCUGCUGUCCUCCCACGGCUGCAGCAGAGUUUG	chr17:80272945-80273246(-)$1	301	129	169	13.2129
AUGACCACAUACUUUGCAAUCAGGCUGAAAUGUGGCAUGC	chr2:43450143-43450430(-)$1	287	225	265	14.3815
CAUCUGCUCUCCUUCCUGGAGCCCAGAGGAGGGCAGCAGA	chr19:13054974-13055215(+)$1	241	104	144	15.4156
UGUCAUUAAUAUACUUUUCCAAAGAUAAGAUUUUUAAUCA	chr6:166733262-166733580(-)$1	318	74	114	12.6343
ACGACCAGGAGCGUUUUGAUAACAGUGACCUCUCUGCGUG	chr8:144898487-144898746(-)$1	259	16	56	13.0319
GGCUGGCUUGGAUCUCGUUUUUAACCCGUUCCUGCCCCAC	chr16:30103735-30103996(-)$1	261	170	210	13.5138
CUUGAAAUUUGAAUUUUGUGUUAGAGAUUUUUUUGUUGUU	chr6:17615408-17615679(-)$1	271	63	103	16.2221
CGUUCUAUGUAGGCUGUGACUUGCGCUGCUUUUUUAGAGC	chr1:234742440-234742772(-)$1	332	150	190	12.6296
UGUUUGGAGGAAAAUGGAUCUUUUCUAGAUUCUUUAAACU	chr1:110943840-110944115(-)$1	275	227	267	14.3000
CCUCAGCACCCCUAGCAUGAACUUGUGGGAUGGUGGGGUU	chr19:17342696-17342967(-)$1	271	72	112	15.0141
AGCUGUUCUCUUUUGCCCGUAGGUGGGAGGGUGGGGAUUG	chr19:54379338-54379607(+)$1	269	15	55	13.5173
CCUGGUGAGCUCAGAUAGUCUCUUUCUCUGACACUGUGUA	chr20:35869812-35870034(+)$1	222	78	118	12.1794
UCACGUGUGCUAGAAGGUUCGAUGCCUCUGGAAUGCAUGU	chr1:6683613-6683967(+)$1	354	35	75	15.4351
UUAUGGACACACAGUUUGCAUCAGAACGUGUUUAUAGAAU	chr20:61303392-61303649(+)$1	257	57	97	18.1162
CUCCAGUGGAGGCUGAGCUGACCCUGGGCUGCUGGAGGCC	chr17:39979067-39979335(+)$1	268	122	162	16.8486
GGAAGACUAGGAUAUGGGUCACACUUAUCUGUGUUCCUAU	chr2:10580496-10580748(-)$1	252	27	67	13.6673
CAGAGGCCUCUCUCUCCGUCGUGGGAGAGAGACGUGUACA	chr17:17715343-17715615(-)$1	272	62	102	12.4865
GUGCUUUGUCCUGGACUCCACUCAGCCUCAGGAUGGGGAA	chr1:33789725-33789999(-)$1	274	207	247	16.7662
GCUGUCUGCAAGGGAGCCCCUAGCCCCUGGCAGACAUAGC	chr10:73576902-73577199(-)$1	297	152	192	13.1359
UGGGGAGUCGGGGAAUAUUUGUGGGUAUUUUUUUUACUUC	chr11:62392231-62392475(-)$1	244	71	111	15.2003
AAGCUGUCCUGCCUAGCGUCCAGCGUCUUCUAGGAGGGUG	chr15:75136531-75136800(-)$1	269	157	197	11.8945

#DB
(((((((((.((.((((......)))).))...)))))))	chr11:64894842-64895102(-)$1	1	152	192	16.0418
((((((((((((.(.((......)).).))))))))))))	chr6:33172040-33172253(+)$1	1	50	90	20.4384
(((((((....((((((......))))))....)))))))	chr1:92146117-92146398(-)$1	1	156	196	15.7858
..(((((..(.((((((......))).))).)...)))))	chr1:161192664-161192886(-)$1	1	51	91	16.2702
((((((.((((...(((......)))....)))).)))))	chr5:177022684-177022947(+)$1	1	47	87	16.0386
(((((.(...(.((((((.....)))))).)...))))))	chr22:24953531-24953801(+)$1	1	169	209	12.6262
(((...((.(.(((((((.....))))))).).))...))	chr17:53470265-53470527(-)$1	1	181	221	13.7353
((((...((.((((.((......)))))).))..))))))	chr4:1810300-1810568(+)$1	1	137	177	15.8286
(((((((((((...(((.......)))...))))))))))	chr8:22477445-22477745(+)$1	1	51	91	13.8634
((.(.((((((...(((......))).)))))).).))((	chr17:79976815-79977049(-)$1	1	68	108	14.1452
((((((..((((..((((....))))..))))....))))	chr22:22114805-22115062(-)$1	1	64	104	12.4069
((.(((....(((..((......))..))).....)))..	chr1:9789073-9789318(-)$1	1	195	235	13.2952
((((..((..(.((.((....)))).)..)).))))))))	chr9:117073369-117073620(+)$1	1	146	186	12.1640
)((((((((((.((.(((....))).)).))))))))))(	chr12:12875017-12875349(+)$1	1	217	257	15.4278
..((((((((((..(((......)))..).))))))))).	chr10:102744484-102744780(+)$1	1	196	236	16.5246
((..((((....(((((......)))))...))))..)))	chr2:27599784-27600038(+)$1	1	87	127	13.5917
(..(((((((((((..((....))..)))))))))))...	chr1:29652695-29652997(+)$1	1	237	277	15.5524
(((((((((((...(.((.....)).)))))))))))).)	chr2:54896424-54896737(+)$1	1	269	309	17.6353
.(((...(((((...((.((...)).))...)))))))).	chr13:20978058-20978352(-)$1	1	237	277	12.5492
(..(...((((((((((......))))))))))..)..))	chr22:38203081-38203318(+)$1	1	118	158	18.0959
((((...((.((((.((......)))))).))..))))))	chr4:1810240-1810500(+)$1	1	197	237	15.8286
)(((((..((.(((.(((......))).))))).))))).	chr12:56547598-56547901(+)$1	1	252	292	12.6955
(((....((((((((((......))))))))))..)))))	chr17:7474858-7475137(+)$1	1	76	116	17.4669
(((((((....((((((......))))))....)))))))	chr1:92146063-92146317(-)$1	1	75	115	15.7858
.((((.((((...((((......)))).)))))))).)).	chr17:66528676-66528952(+)$1	1	213	253	12.3085
)((((((((((..(.((......)).)..)))))).))))	chr19:12810071-12810333(-)$1	1	139	179	13.1456
((..(((..(((.(..(((...)))..).))).)))))).	chr16:30103600-30103915(-)$1	1	89	129	13.5138
.(((.....((((((((((....))))))))))....)))	chr5:52781895-52782183(+)$1	1	54	94	14.3931
..(..((.(((((((((......))..))))))).))..)	chr17:80272945-80273246(-)$1	1	129	169	13.2129
(((.((((((.....((......))....)))))))))..	chr2:43450143-43450430(-)$1	1	225	265	14.3815
(..((((((((((..((((...))))))))))))))..))	chr19:13054974-13055215(+)$1	1	104	144	15.4156
((..(((((....(((.((....)).)))....)))))))	chr6:166733262-166733580(-)$1	1	74	114	12.6343
(((..((((((.((((((....))).)))))).)))))).	chr8:144898487-144898746(-)$1	1	16	56	13.0319
((..(((..(((.(..(((...)))..).))).)))))).	chr16:30103735-30103996(-)$1	1	170	210	13.5138
(....(((..(((((((......)))))))....)))...	chr6:17615408-17615679(-)$1	1	63	103	16.2221
)((((((...((((.(((.....))).))))...))))))	chr1:234742440-234742772(-)$1	1	150	190	12.6296
.((((((((((...((((.....))))..)))))))))))	chr1:110943840-110944115(-)$1	1	227	267	14.3000
(((((.((.(((..(((......)))))).)).)))))..	chr19:17342696-17342967(-)$1	1	72	112	15.0141
(((.((((((.(((.(((......))).))).)))))).)	chr19:54379338-54379607(+)$1	1	15	55	13.5173
(.(((((...(((((.((.....)).)))))))))).)))	chr20:35869812-35870034(+)$1	1	78	118	12.1794
((((((((.(((((.(((.....))))))))...))))))	chr1:6683613-6683967(+)$1	1	35	75	15.4351
((((((((((...((((......)))))))))))))))))	chr20:61303392-61303649(+)$1	1	57	97	18.1162
(((((((...((((.((......)).))))))))))))).	chr17:39979067-39979335(+)$1	1	122	162	16.8486
((((.((..(((((.((......))))))))).)))))))	chr2:10580496-10580748(-)$1	1	27	67	13.6673
((((.((.(((((((((......))))))))).))(((((	chr17:17715343-17715615(-)$1	1	62	102	12.4865
)).(((((((((((.((......)).).))))))))))..	chr1:33789725-33789999(-)$1	1	207	247	16.7662
(.(((((((.((((.((.....)))))).)))))))))).	chr10:73576902-73577199(-)$1	1	152	192	13.1359
.(((((((.((((((((((....))))))))))..)))))	chr11:62392231-62392475(-)$1	1	71	111	15.2003
..(((.(((((....((((...))))....))))).))))	chr15:75136531-75136800(-)$1	1	157	197	11.8945

#PSSM
c : 0.20	= : 0.14	g : 0.12	e : 0.10	d : 0.08	[ : 0.08	i : 0.06	! : 0.04	b : 0.04	F : 0.04	: : 0.04	+ : 0.02	C : 0.02	
= : 0.18	c : 0.16	g : 0.14	! : 0.10	d : 0.10	e : 0.08	i : 0.04	b : 0.04	[ : 0.04	+ : 0.02	: : 0.02	# : 0.02	f : 0.02	F : 0.02	
= : 0.18	g : 0.16	! : 0.14	e : 0.12	c : 0.10	d : 0.08	i : 0.06	[ : 0.04	a : 0.02	# : 0.02	f : 0.02	F : 0.02	: : 0.02	
= : 0.22	g : 0.16	! : 0.12	e : 0.10	c : 0.08	i : 0.06	d : 0.06	a : 0.04	# : 0.04	[ : 0.04	" : 0.02	f : 0.02	F : 0.02	
= : 0.22	e : 0.12	g : 0.10	" : 0.10	c : 0.08	i : 0.06	! : 0.06	d : 0.06	f : 0.06	[ : 0.04	# : 0.04	$ : 0.02	: : 0.02	
= : 0.22	g : 0.10	" : 0.10	f : 0.10	c : 0.10	e : 0.08	[ : 0.08	i : 0.06	b : 0.06	! : 0.02	d : 0.02	# : 0.02	$ : 0.02	
= : 0.20	b : 0.12	f : 0.10	g : 0.08	e : 0.08	" : 0.08	c : 0.08	i : 0.06	! : 0.04	# : 0.04	d : 0.04	[ : 0.02	a : 0.02	$ : 0.02	
= : 0.24	! : 0.12	b : 0.10	" : 0.08	f : 0.08	# : 0.06	d : 0.06	e : 0.06	i : 0.04	[ : 0.04	c : 0.04	g : 0.04	$ : 0.02	
= : 0.22	! : 0.12	# : 0.08	" : 0.08	[ : 0.08	f : 0.08	i : 0.06	d : 0.06	b : 0.06	e : 0.06	g : 0.04	$ : 0.02	c : 0.02	
= : 0.26	# : 0.10	[ : 0.08	" : 0.08	f : 0.08	e : 0.08	c : 0.08	d : 0.06	a : 0.04	! : 0.04	i : 0.04	b : 0.02	g : 0.02	
= : 0.24	d : 0.14	c : 0.10	e : 0.10	# : 0.08	[ : 0.08	a : 0.04	f : 0.04	i : 0.04	" : 0.04	g : 0.04	b : 0.02	$ : 0.02	
= : 0.16	c : 0.14	" : 0.14	d : 0.12	[ : 0.08	e : 0.08	g : 0.06	# : 0.06	f : 0.04	b : 0.02	a : 0.02	! : 0.02	$ : 0.02	i : 0.02	
" : 0.16	= : 0.14	c : 0.10	d : 0.10	[ : 0.08	! : 0.08	e : 0.08	f : 0.06	g : 0.06	b : 0.04	# : 0.04	$ : 0.02	i : 0.02	
d : 0.16	" : 0.12	a : 0.10	c : 0.10	! : 0.10	= : 0.10	e : 0.08	f : 0.06	g : 0.06	b : 0.04	$ : 0.02	i : 0.02	# : 0.02	
[ : 0.28	c : 0.16	d : 0.10	! : 0.10	= : 0.08	f : 0.06	g : 0.06	e : 0.04	a : 0.02	" : 0.02	$ : 0.02	i : 0.02	# : 0.02	
b : 0.26	c : 0.26	d : 0.14	= : 0.08	f : 0.06	! : 0.06	g : 0.04	[ : 0.04	e : 0.02	i : 0.02	
b : 0.32	c : 0.28	d : 0.14	= : 0.08	f : 0.06	g : 0.04	e : 0.02	[ : 0.02	i : 0.02	
o : 0.51	c : 0.16	d : 0.08	b : 0.08	= : 0.04	f : 0.02	g : 0.02	p : 0.02	m : 0.02	[ : 0.02	n : 0.02	
o : 0.55	n : 0.16	m : 0.10	b : 0.04	c : 0.04	= : 0.04	d : 0.04	p : 0.02	
o : 0.55	n : 0.16	m : 0.16	l : 0.08	p : 0.02	b : 0.02	
o : 0.55	n : 0.16	m : 0.16	l : 0.10	p : 0.02	
o : 0.55	n : 0.16	m : 0.14	l : 0.10	p : 0.02	b : 0.02	
o : 0.55	n : 0.14	c : 0.08	d : 0.06	b : 0.06	m : 0.06	p : 0.02	l : 0.02	
b : 0.34	c : 0.22	d : 0.14	= : 0.08	f : 0.06	g : 0.04	o : 0.04	p : 0.02	e : 0.02	i : 0.02	
b : 0.30	c : 0.28	d : 0.16	= : 0.08	f : 0.06	g : 0.04	e : 0.02	2 : 0.02	i : 0.02	
] : 0.22	d : 0.20	c : 0.20	2 : 0.10	= : 0.08	f : 0.06	g : 0.04	e : 0.04	4 : 0.02	i : 0.02	
d : 0.16	c : 0.12	2 : 0.12	= : 0.12	a : 0.10	e : 0.08	f : 0.06	] : 0.06	4 : 0.06	g : 0.04	b : 0.04	i : 0.02	
= : 0.16	] : 0.12	c : 0.10	d : 0.10	2 : 0.10	f : 0.08	e : 0.08	4 : 0.06	g : 0.06	b : 0.04	a : 0.04	3 : 0.02	i : 0.02	
= : 0.20	c : 0.14	d : 0.12	f : 0.08	] : 0.08	4 : 0.06	g : 0.06	3 : 0.06	2 : 0.06	e : 0.06	b : 0.02	a : 0.02	i : 0.02	
= : 0.24	c : 0.14	4 : 0.10	] : 0.10	g : 0.08	d : 0.08	3 : 0.06	f : 0.06	e : 0.06	b : 0.04	i : 0.02	
= : 0.26	b : 0.10	c : 0.10	4 : 0.08	d : 0.08	3 : 0.06	f : 0.06	i : 0.06	e : 0.06	] : 0.04	g : 0.04	a : 0.02	5 : 0.02	
= : 0.26	b : 0.10	3 : 0.08	4 : 0.08	d : 0.08	f : 0.06	i : 0.06	e : 0.06	c : 0.06	a : 0.04	] : 0.04	g : 0.04	5 : 0.02	
= : 0.26	] : 0.14	3 : 0.10	4 : 0.10	f : 0.08	d : 0.06	g : 0.06	e : 0.06	2 : 0.04	i : 0.04	5 : 0.02	b : 0.02	
= : 0.18	g : 0.10	2 : 0.10	e : 0.10	3 : 0.08	d : 0.08	i : 0.06	4 : 0.06	f : 0.06	c : 0.06	b : 0.04	] : 0.04	5 : 0.02	
= : 0.20	g : 0.12	e : 0.12	f : 0.08	c : 0.08	i : 0.06	d : 0.06	2 : 0.06	] : 0.04	a : 0.04	b : 0.04	4 : 0.04	3 : 0.02	5 : 0.02	
= : 0.20	e : 0.18	g : 0.16	c : 0.12	i : 0.06	] : 0.06	4 : 0.04	d : 0.04	f : 0.04	3 : 0.02	2 : 0.02	a : 0.02	b : 0.02	
= : 0.20	c : 0.18	g : 0.14	e : 0.14	i : 0.06	2 : 0.06	b : 0.04	] : 0.04	d : 0.04	f : 0.04	3 : 0.02	4 : 0.02	
c : 0.22	= : 0.18	e : 0.16	g : 0.14	i : 0.06	2 : 0.06	3 : 0.04	b : 0.04	f : 0.04	d : 0.02	4 : 0.02	
c : 0.24	= : 0.14	g : 0.14	e : 0.14	i : 0.06	2 : 0.06	3 : 0.04	] : 0.04	b : 0.02	d : 0.02	4 : 0.02	f : 0.02	h : 0.02	: : 0.02	
c : 0.16	e : 0.14	g : 0.12	= : 0.10	: : 0.10	] : 0.08	3 : 0.04	d : 0.04	2 : 0.04	f : 0.04	i : 0.02	> : 0.02	a : 0.02	4 : 0.02	E : 0.02	h : 0.02	

#score	716.759839481943
#seq	49
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF803GSP_RPS11_transcript_m1_run2.txt

#BEAR
[ccc"""hhhhhhhh[ccclllccc333hhhhhhhh]ccc	chr8:141554079-141554299(-)$1	220	62	102	18.4707
ee[ggggggg[ccc!!a!!ammmma22a22cccggggggg	chr6:27778060-27778301(+)$1	241	3	43	14.4841
ciiiiiiiii[cccccc[bblllbb]ccc]ccciiiiiii	chr13:92000514-92000804(+)$1	290	28	68	14.2156
cc$$$$$bb[bb"""cccnnnnnccc4444bb]bb333cc	chr19:893464-893689(+)$1	225	65	105	15.5037
[ccc"""hhhhhhhh[ccclllccc333hhhhhhhh]ccc	chr8:141554074-141554279(-)$1	205	42	82	18.4707
ffff####cccbbddddoooooodddd22bb22ccc333f	chrX:68892278-68892501(+)$1	223	61	101	20.3789
eeee"""bb!!dddd!!bbmmmmbb22dddd22bb4444e	chr3:134502292-134502497(-)$1	205	117	157	19.5789
eeee"""bb!!dddd!!bbmmmmbb22dddd22bb4444e	chr3:134502255-134502492(-)$1	237	112	152	19.5789
ddddffffff[dddd[ccclllccc22dddd22ffffffd	chr17:56408990-56409278(-)$1	288	151	191	14.8888
ffff####cccbbddddoooooodddd22bb22ccc333f	chrX:68892301-68892514(+)$1	213	38	78	20.3789
ffff####cccbbddddoooooodddd22bb22ccc333f	chrX:68892270-68892478(+)$1	208	69	109	20.3789
gggggccc[ccc[cccccclllccc22ccc]cccccc]gg	chr2:54197781-54198048(-)$1	267	159	199	16.0091

#otherMatches

#Seq PSSM
GUGGCCAGGGGUCCUUCCUGAAAGGCAUGGGGUCUCACUA	chr8:141554079-141554299(-)$1	220	62	102	18.4707
GGUGCGUGAGAUCGCGCAGGACUUCAAGACCGACUUGCGC	chr6:27778060-27778301(+)$1	241	3	43	14.4841
CCCUCGGGGAGAGGACGUGCGAGGCCCGUGCCUUCUccgg	chr13:92000514-92000804(+)$1	290	28	68	14.2156
aagauuagcauggccccugcgcaaggaugacacgcaaauu	chr19:893464-893689(+)$1	225	65	105	15.5037
GUGGCCAGGGGUCCUUCCUGAAAGGCAUGGGGUCUCACUA	chr8:141554074-141554279(-)$1	205	42	82	18.4707
ccugaaugagccugaucucgucugaucuuggaagcuaagc	chrX:68892278-68892501(+)$1	223	61	101	20.3789
ccugaacgcgcccgaucucgucugaucucggaagcuaagc	chr3:134502292-134502497(-)$1	205	117	157	19.5789
ccugaacgcgcccgaucucgucugaucucggaagcuaagc	chr3:134502255-134502492(-)$1	237	112	152	19.5789
AAGGGUGGGGACUGAGGCUCUGGGCAGUCAGGACCUCACG	chr17:56408990-56409278(-)$1	288	151	191	14.8888
ccugaaugagccugaucucgucugaucuuggaagcuaagc	chrX:68892301-68892514(+)$1	213	38	78	20.3789
ccugaaugagccugaucucgucugaucuuggaagcuaagc	chrX:68892270-68892478(+)$1	208	69	109	20.3789
gcccccggagccgggcgggcgucccgagccgggcccgcgg	chr2:54197781-54198048(-)$1	267	159	199	16.0091

#DB
.(((...((((((((.(((...)))...)))))))).)))	chr8:141554079-141554299(-)$1	1	62	102	18.4707
((.(((((((.(((..(..(....)..)..))))))))))	chr6:27778060-27778301(+)$1	1	3	43	14.4841
)(((((((((.((((((.((...)).))).))))))))))	chr13:92000514-92000804(+)$1	1	28	68	14.2156
((.....((.((...(((.....)))....)).))...))	chr19:893464-893689(+)$1	1	65	105	15.5037
.(((...((((((((.(((...)))...)))))))).)))	chr8:141554074-141554279(-)$1	1	42	82	18.4707
((((....(((((((((......))))..))..)))...)	chrX:68892278-68892501(+)$1	1	61	101	20.3789
((((...((..((((..((....))..))))..))....)	chr3:134502292-134502497(-)$1	1	117	157	19.5789
((((...((..((((..((....))..))))..))....)	chr3:134502255-134502492(-)$1	1	112	152	19.5789
))))((((((.((((.(((...)))..))))..))))))(	chr17:56408990-56409278(-)$1	1	151	191	14.8888
((((....(((((((((......))))..))..)))...)	chrX:68892301-68892514(+)$1	1	38	78	20.3789
((((....(((((((((......))))..))..)))...)	chrX:68892270-68892478(+)$1	1	69	109	20.3789
((((((((.(((.((((((...)))..))).)))))).))	chr2:54197781-54198048(-)$1	1	159	199	16.0091

#PSSM
e : 0.25	f : 0.25	[ : 0.16	c : 0.16	d : 0.08	g : 0.08	
c : 0.25	e : 0.25	f : 0.25	i : 0.08	d : 0.08	g : 0.08	
f : 0.25	c : 0.16	e : 0.16	[ : 0.08	i : 0.08	$ : 0.08	d : 0.08	g : 0.08	
f : 0.25	c : 0.16	g : 0.16	e : 0.16	i : 0.08	$ : 0.08	d : 0.08	
" : 0.33	# : 0.25	g : 0.16	i : 0.08	$ : 0.08	f : 0.08	
" : 0.33	# : 0.25	g : 0.08	i : 0.08	$ : 0.08	f : 0.08	c : 0.08	
" : 0.33	# : 0.25	g : 0.08	i : 0.08	$ : 0.08	f : 0.08	c : 0.08	
b : 0.25	# : 0.25	h : 0.16	g : 0.08	i : 0.08	f : 0.08	c : 0.08	
b : 0.25	c : 0.25	h : 0.16	g : 0.08	i : 0.08	f : 0.08	[ : 0.08	
c : 0.33	h : 0.16	! : 0.16	g : 0.08	i : 0.08	[ : 0.08	f : 0.08	
c : 0.33	[ : 0.25	h : 0.16	! : 0.16	b : 0.08	
b : 0.33	c : 0.25	d : 0.25	h : 0.16	
b : 0.25	d : 0.25	h : 0.16	c : 0.16	" : 0.08	[ : 0.08	
d : 0.49	c : 0.25	h : 0.16	" : 0.08	
d : 0.49	h : 0.16	c : 0.16	! : 0.08	" : 0.08	
[ : 0.25	! : 0.25	c : 0.25	d : 0.25	
c : 0.49	d : 0.25	! : 0.16	a : 0.08	
c : 0.41	o : 0.25	b : 0.16	! : 0.08	[ : 0.08	
c : 0.33	b : 0.25	o : 0.25	! : 0.08	n : 0.08	
l : 0.33	o : 0.25	m : 0.16	a : 0.08	b : 0.08	n : 0.08	
l : 0.41	m : 0.25	o : 0.25	n : 0.08	
l : 0.41	m : 0.25	o : 0.25	n : 0.08	
c : 0.33	m : 0.25	o : 0.25	l : 0.08	n : 0.08	
c : 0.41	b : 0.25	d : 0.25	m : 0.08	
c : 0.41	b : 0.25	d : 0.25	a : 0.08	
2 : 0.41	d : 0.25	3 : 0.16	] : 0.08	c : 0.08	
2 : 0.41	d : 0.25	3 : 0.16	c : 0.08	4 : 0.08	
2 : 0.25	d : 0.25	3 : 0.16	c : 0.16	a : 0.08	4 : 0.08	
2 : 0.33	d : 0.25	h : 0.16	c : 0.16	4 : 0.08	
b : 0.25	d : 0.25	h : 0.16	2 : 0.08	] : 0.08	4 : 0.08	c : 0.08	
b : 0.33	d : 0.25	h : 0.16	c : 0.16	] : 0.08	
2 : 0.49	c : 0.25	h : 0.16	b : 0.08	
2 : 0.49	c : 0.25	h : 0.16	] : 0.08	
c : 0.33	b : 0.25	h : 0.16	g : 0.08	i : 0.08	f : 0.08	
c : 0.33	b : 0.25	h : 0.16	g : 0.08	i : 0.08	f : 0.08	
c : 0.33	h : 0.16	4 : 0.16	g : 0.08	i : 0.08	3 : 0.08	f : 0.08	
3 : 0.33	] : 0.16	4 : 0.16	g : 0.08	i : 0.08	f : 0.08	c : 0.08	
3 : 0.33	c : 0.16	4 : 0.16	g : 0.08	i : 0.08	f : 0.08	] : 0.08	
c : 0.25	3 : 0.25	g : 0.16	4 : 0.16	i : 0.08	f : 0.08	
c : 0.25	f : 0.25	g : 0.16	e : 0.16	i : 0.08	d : 0.08	

#score	212.33784762132498
#seq	12
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_CDS_m1_run2.txt

#BEAR
!dddd[ccc[a[eeeeemmmmeeeee]a4444cccdddd2	chr3:48481711-48481969(+)$1	258	172	212	12.8192
fffff$$$$$a!!cccnnnnnccc22a22ffffffiiiii	chrX:119010376-119010594(+)$1	218	76	116	11.7805
[a!!gggggggccc!!ammmma22ccc]ggggggg333a]	chr2:47387800-47388044(-)$1	244	131	171	13.6496
!============!!ccclllccc]============444	chrX:47073643-47073917(+)$1	274	21	61	15.5573
dddd[eeeee"""ddddnnnnndddd333eeeee]dddd2	chr17:45299055-45299286(+)$1	231	149	189	11.0912
##eeeee"""bb!!cccmmmmccc]bb]eeeee4444ggg	chr19:34887209-34887436(+)$1	227	169	209	15.4689
d[bb"""ccc####cccmmmmccc]ccc]bbdddd:FFFF	chr1:156109457-156109757(+)$1	300	253	293	13.0829
ggggg$$$$$cccddddmmmmdddd]ccc333ggggggg2	chr17:47490503-47490754(-)$1	251	83	123	13.0219
ccc!!ccc[ccc!!cccmmmmccc22cccccc22ccc333	chr6:150123256-150123573(+)$1	317	166	206	16.9714
eeedddd!!ccc[cccooooooccc]ccc]dddd]eeeee	chr12:56511165-56511393(+)$1	228	45	85	11.8749
ccc[eeeee####ddddmmmmdddd22eeeeeccc]bba]	chr16:88876439-88876656(-)$1	217	156	196	13.3191
fffff[a[dddd"""bbmmmmbb333dddd]a22ffffff	chr19:2427311-2427575(-)$1	264	139	179	12.3503
c"""iiiiiiiii[cccmmmmccciiiiiiiii4444ccc	chr22:24967877-24968131(+)$1	254	125	165	16.1519
ddd[ggggggg"""cccmmmmccc]ggggggg]dddd:CC	chr6:33239761-33240000(+)$1	239	196	236	13.4726
iii[a[eeeee"""cccooooooccc]eeeeea]iiiiii	chr17:27076851-27077133(+)$1	282	160	200	14.0120
cdddd"""eeeee[cccmmmmccc4444eeeeedddd]cc	chr11:5290687-5290916(-)$1	229	76	116	17.2692
[eeeeeccc!!a!!cccmmmmccc22a22ccc]eeeee]b	chr16:88713416-88713683(-)$1	267	63	103	15.5869
========ccc"""cccmmmmccc4444ccc]========	chr14:78182037-78182305(+)$1	268	83	123	18.8507
eeeedddd[bb"""cccmmmmccc333bb]dddd888888	chr7:22857523-22857764(-)$1	241	166	206	12.9961
[bb"""eeeee####bbmmmmbb4444eeeee4444bb]d	chr2:232576553-232576793(+)$1	240	194	234	14.3954
eeeee[ccc!!ffffffmmmmffffff333ccceeeee]h	chr19:19636890-19637167(+)$1	277	52	92	12.0140
[bb"""bb!!a[ddddmmmmdddd]a333bb]bb======	chr17:39680112-39680351(-)$1	239	160	200	12.5084
d!!ffffff"""a[cccmmmmccc]affffff22ddddFF	chr9:127623726-127623934(-)$1	208	150	190	14.2425
"""dddd[ccca[cccnnnnnccc]a]cccddddddddii	chr2:97749335-97749626(-)$1	291	181	221	12.5848
ffff[ccc[a!!eeeeemmmmeeeee22accc]fffffff	chr12:56553942-56554204(+)$1	262	213	253	12.1087
GBBggggggg!!a[cccmmmmccc]a22gggggggeeeee	chr6:34385214-34385423(-)$1	209	55	95	13.8191
cdddd"""eeeee[cccmmmmccc4444eeeeedddd]cc	chr11:5290596-5290848(-)$1	252	8	48	17.2692
cc"""eeeee[ccccccmmmmccc]ccc]eeeee4444cc	chr7:99751475-99751733(+)$1	258	102	142	15.6678
ddd[ccc[bb!!cccooooooccc]bb]ccc]dddd]bb]	chr12:56552041-56552289(+)$1	248	127	167	12.4982
cdddd"""eeeee[cccmmmmccc4444eeeeedddd]cc	chr11:5290716-5290930(-)$1	214	90	130	17.2692
cdddd"""eeeee[cccmmmmccc4444eeeeedddd]cc	chr11:5290763-5290973(-)$1	210	133	173	17.2692
d!!ffffff"""a[cccmmmmccc]affffff22dddd:b	chr9:127623676-127623926(-)$1	250	142	182	14.1342
ffff"""cccbbbbcccmmmmccc]bb]bb]cccffffff	chr2:217069810-217070073(+)$1	263	19	59	13.0853
ggggccc!!ccca[cccmmmmccc]a]ccc22ccc55555	chr5:140025014-140025284(-)$1	270	20	60	13.2658
[ccc"""bb[gggggggmmmmggggggg]bb4444cccab	chr19:42364744-42364955(+)$1	211	125	165	13.2130
fffeeeeeccc"""cccmmmmccc333ccc88888888ee	chr11:5269486-5269706(-)$1	220	3	43	13.8051
gbb[ffffff####cccmmmmcccffffff]bb]gggggg	chr10:106026953-106027276(+)$1	323	167	207	13.7847
ccc!!ccc[ccc[ddddmmmmddddcccccc]ccc]a]cc	chr16:202819-203051(+)$1	232	111	151	14.4363
b[bb!!ccc"""a[aooooooa]a4444ccc22bb]bbbb	chr19:49611426-49611723(+)$1	297	85	125	12.9277
fffff[a[dddd!!cccmmmmcccdddd]a]ffffff333	chr17:78109710-78109968(-)$1	258	69	109	14.3318
!!dddd"""bb!!ddddnnnnndddd22bb333dddd]dd	chr12:57038862-57039096(-)$1	234	138	178	11.3217
cccccc[accc"""ddddmmmmdddd]ccc22a]ccc]cc	chr12:57031949-57032218(-)$1	269	64	104	13.2311
===bb!!ccc[a!!cccnnnnnccc22accc22bb]====	chr14:77935425-77935762(+)$1	337	20	60	13.5823
cbbccc!!ccc[ccc[ammmma]ccc22ccc]ccc333bb	chr19:50363432-50363693(+)$1	261	148	188	14.9061
bb!!ccc[ffffff[ccclllccc4444ffffff]ccc22	chr15:44085807-44086031(+)$1	224	78	118	12.3856
========bb[ddddoooooodddd333bb333=======	chr16:29708525-29708917(+)$1	392	6	46	13.1585
ccc!!bbeeeee!!cccmmmmccceeeee4444bb22ccc	chr1:45480367-45480608(+)$1	241	99	139	14.3307
ee[accc[eeeee[aooooooa]eeeeeccc]a]eeeeee	chrX:119007179-119007452(+)$1	273	153	193	11.1115
cdddd"""eeeee[cccmmmmccc4444eeeeedddd]cc	chr11:5290773-5290997(-)$1	224	157	197	17.2692
[============[cccmmmmccc666666==========	chr19:38743433-38743695(-)$1	262	31	71	15.5556
[ccc"""eeeee"""bbmmmmbb4444eeeee333ccccc	chr10:106026907-106027153(+)$1	246	104	144	15.4252
cdddd"""eeeee[cccmmmmccc4444eeeeedddd]cc	chr11:5290797-5291006(-)$1	209	166	206	17.2692
ggggggg"""ccc[cccmmmmccc]ccc666666gggggg	chr16:31201527-31201820(+)$1	293	7	47	13.6628
#dddd!!ccc[ffffffmmmmffffff]ccc333dddd44	chr5:159855563-159855823(+)$1	260	192	232	13.4649
eee!!ccc[dddd[cccooooooccc]dddd]ccc4444e	chr16:88876377-88876625(-)$1	248	103	143	12.9682

#otherMatches

#Seq PSSM
gaggcacuggcgggugcgggggcgCUGGGAGACAGGCCUG	chr3:48481711-48481969(+)$1	258	172	212	12.8192
UCUCCUUUUUAAACUGUUUUUCAGGGUUUGGAGAACAUUG	chrX:119010376-119010594(+)$1	218	76	116	11.7805
GACCUUGUACAGAAUGUGUUAAAUUUCUUGUACAAAAUUG	chr2:47387800-47388044(-)$1	244	131	171	13.6496
CAGAUGGGGGCUGGACCCUCUGGGAUGGUCUCCAUCUUAC	chrX:47073643-47073917(+)$1	274	21	61	15.5573
CGUCCUUGCCACCCUGGGUAUGCCAGCUGGGCAGAGAUGA	chr17:45299055-45299286(+)$1	231	149	189	11.0912
AGGAUCUUCCAGAAGAGAUAUCUCACUUAGGUCAGUGCCC	chr19:34887209-34887436(+)$1	227	169	209	15.4689
CUGGAAAGGGGAGAGCCUGCUGGCACCCACCGUGGAGGAG	chr1:156109457-156109757(+)$1	300	253	293	13.0829
UUGUUUUUAUCCCCUUAGGUGUGAGAGGGUCCAGCAGAAG	chr17:47490503-47490754(-)$1	251	83	123	13.0219
CUACAAGAUGGCAGCAUCAAAAUGAAGCCUCUGAUGGGGG	chr6:150123256-150123573(+)$1	317	166	206	16.9714
GAGGGAAAGGCAACUCUGGUUUGAGGUGUAUUCCAUUCCU	chr12:56511165-56511393(+)$1	228	45	85	11.8749
GGAUGAUCUGCUGGCCACUGGUGGUAAGGGUCUCCCCGCA	chr16:88876439-88876656(-)$1	217	156	196	13.3191
GGCCAACGCGCAGGAGCUGCUGCAGGUGCGGGGCUGGCCG	chr19:2427311-2427575(-)$1	264	139	179	12.3503
GAGUGGGUGCUUGUGCAUAUAUGCUAGGUAUCUUUUGCCA	chr22:24967877-24968131(+)$1	254	125	165	16.1519
GCUGUCAGGGUUCUGGAAACGUCCUGCCCUGAGGGCCUGC	chr6:33239761-33240000(+)$1	239	196	236	13.4726
CCCCCUCUGGUUAUUUAUUUCCUUAGUGCCAGGAGGGCAC	chr17:27076851-27077133(+)$1	282	160	200	14.0120
UGCCAUCCUGGGCAACCCCAAGGUCAAGGCCCAUGGCAAG	chr11:5290687-5290916(-)$1	229	76	116	17.2692
GGCUGAGCUGGGCUGUUCCUUAACCACAUGGCUUCAGUGU	chr16:88713416-88713683(-)$1	267	63	103	15.5869
GAGACUGGCUUUCACAGAGGUUUGGGUUGGGUUCAGUUUU	chr14:78182037-78182305(+)$1	268	83	123	18.8507
CAUUUCAGGACAAAUGUUCAUACAGUAGUACUGAAUCACU	chr7:22857523-22857764(-)$1	241	166	206	12.9961
GGCAGAAGGGGAAGGAAGGAAUUGGGGCUCCUGGGAGUGG	chr2:232576553-232576793(+)$1	240	194	234	14.3954
GGGUGUCUGGGGGCGGGCUGGCCCGCUGAGCAGCGCCUCU	chr19:19636890-19637167(+)$1	277	52	92	12.0140
CGCAUAUCCAGGCGCUGAUCAGCGGUAUUGAAGCCCAGCU	chr17:39680112-39680351(-)$1	239	160	200	12.5084
GAAACAGCUGGACGACCUGAAGGUGGAGCUGUCCCAGCUG	chr9:127623726-127623934(-)$1	208	150	190	14.2425
UCAGCCUAGCCCAGGGAAAGGCCCAGUGGCAGGUGUGGGC	chr2:97749335-97749626(-)$1	291	181	221	12.5848
AAGUAUAGUGUCUGGGGCUUUCCCUAUCCCUGGACUUGGG	chr12:56553942-56554204(+)$1	262	213	253	12.1087
ACCAGAGUGCCGCUCAUGCUGAUGUGAUGUGCUUUCUCUU	chr6:34385214-34385423(-)$1	209	55	95	13.8191
UGCCAUCCUGGGCAACCCCAAGGUCAAGGCCCAUGGCAAG	chr11:5290596-5290848(-)$1	252	8	48	17.2692
UGAUGUCUGAGCCUGCCGGAGGGCGAGGGUCGGAGAAGCG	chr7:99751475-99751733(+)$1	258	102	142	15.6678
AGAGCUGAGCAGUCAAGAUGGUGGGGCCCAGGUCUUGGGA	chr12:56552041-56552289(+)$1	248	127	167	12.4982
UGCCAUCCUGGGCAACCCCAAGGUCAAGGCCCAUGGCAAG	chr11:5290716-5290930(-)$1	214	90	130	17.2692
UGCCAUCCUGGGCAACCCCAAGGUCAAGGCCCAUGGCAAG	chr11:5290763-5290973(-)$1	210	133	173	17.2692
GAAACAGCUGGACGACCUGAAGGUGGAGCUGUCCCAGCUG	chr9:127623676-127623926(-)$1	250	142	182	14.1342
UCAUUAAACCCUCUCUCACCAGAGAAGCAGUGGUAUGAAA	chr2:217069810-217070073(+)$1	263	19	59	13.0853
GCAUUUGGCCAAGAGACGAAUGUCCCUUUGAACAACUUCA	chr5:140025014-140025284(-)$1	270	20	60	13.2658
UGAACCAGCAGGAGUUCGUCAGAGCUCUGGCAGCCUUCCU	chr19:42364744-42364955(+)$1	211	125	165	13.2130
GCUGGUGACCGUUUUGGCAAUCCAUUUCGGCAAAGAAUUC	chr11:5269486-5269706(-)$1	220	3	43	13.8051
CUACUUACAGAACAGCCCUGAGGCCUGUGACUAUGGGCUC	chr10:106026953-106027276(+)$1	323	167	207	13.7847
GGACCAUCAUUGUGUCCAUGUGGGCCAAGAUCUCCACGCA	chr16:202819-203051(+)$1	232	111	151	14.4363
cgcgagcacaaacggggggagcggggcagugagcggggca	chr19:49611426-49611723(+)$1	297	85	125	12.9277
GGUGUGGCCAUUAACUUUGUAAAGAAUGACGACAUCCGCA	chr17:78109710-78109968(-)$1	258	69	109	14.3318
UUGGGUAAGUAGAGUUUGUUAGGAAUAGUAAAGACCUUGU	chr12:57038862-57039096(-)$1	234	138	178	11.3217
GAAGCUGUGGCAAAAGCUGAUAAGCUGGCUGAAGAGCAUU	chr12:57031949-57032218(-)$1	269	64	104	13.2311
UUCAUCGACAAGAACGGAGAGACUGAGCUGUGCAUGGAAG	chr14:77935425-77935762(+)$1	337	20	60	13.5823
CCCGCAGAGACUGGUGAGUGGUGACCCUGUCAUGUACAGG	chr19:50363432-50363693(+)$1	261	148	188	14.9061
GCCCCAUCAUCUCUACCCCCAGGGACUCGGAGAUCAUGCA	chr15:44085807-44086031(+)$1	224	78	118	12.3856
ACGGCCACCGUGCUGAAGGCCCAGUUCCCGAGUGUGGCUG	chr16:29708525-29708917(+)$1	392	6	46	13.1585
GGUGGUUGGGCUUGACUGGACAGUGGCCCCAAAGAAAGCC	chr1:45480367-45480608(+)$1	241	99	139	14.3307
GUUGAUCGUUACUAUGUGUCAAAGGUAAGAUGCCACUCUG	chrX:119007179-119007452(+)$1	273	153	193	11.1115
UGCCAUCCUGGGCAACCCCAAGGUCAAGGCCCAUGGCAAG	chr11:5290773-5290997(-)$1	224	157	197	17.2692
GAGGGAGGGAGGGAAGGGGAUCCUAAGCACCCCUCCCUCC	chr19:38743433-38743695(-)$1	262	31	71	15.5556
GUGUAGACCACACUCCAAAACUGAAACUGUGGAUGGCAGC	chr10:106026907-106027153(+)$1	246	104	144	15.4252
UGCCAUCCUGGGCAACCCCAAGGUCAAGGCCCAUGGCAAG	chr11:5290797-5291006(-)$1	209	166	206	17.2692
AUGGGUUAGAUUUACCAAACUUGGAGAGGGAGCAGACCCA	chr16:31201527-31201820(+)$1	293	7	47	13.6628
GUAUUGUGGUUGCUUUUCCAUGGAGGUUACUUAAAAUAAC	chr5:159855563-159855823(+)$1	260	192	232	13.4649
CAGGACAGAGGGUGGUCGUCGUGGAUGAUCUGCUGGCCAC	chr16:88876377-88876625(-)$1	248	103	143	12.9682

#DB
.((((.(((.(.(((((....))))).)....))))))).	chr3:48481711-48481969(+)$1	1	172	212	12.8192
(((((.....(..(((.....)))..)..))))))(((((	chrX:119010376-119010594(+)$1	1	76	116	11.7805
.(..((((((((((..(....)..))).)))))))...).	chr2:47387800-47388044(-)$1	1	131	171	13.6496
.((((((((((((..(((...))).))))))))))))...	chrX:47073643-47073917(+)$1	1	21	61	15.5573
((((.(((((...((((.....))))...))))).)))).	chr17:45299055-45299286(+)$1	1	149	189	11.0912
..(((((...((..(((....))).)).)))))....)))	chr19:34887209-34887436(+)$1	1	169	209	15.4689
(.((...(((....(((....))).))).)))))).))))	chr1:156109457-156109757(+)$1	1	253	293	13.0829
(((((.....(((((((....)))).)))...))))))).	chr17:47490503-47490754(-)$1	1	83	123	13.0219
(((..(((.(((..(((....)))..))))))..)))...	chr6:150123256-150123573(+)$1	1	166	206	16.9714
(((((((..(((.(((......))).))).)))).)))))	chr12:56511165-56511393(+)$1	1	45	85	11.8749
(((.(((((....((((....))))..)))))))).))).	chr16:88876439-88876656(-)$1	1	156	196	13.3191
(((((.(.((((...((....))...)))).)..))))))	chr19:2427311-2427575(-)$1	1	139	179	12.3503
(...(((((((((.(((....))))))))))))....)))	chr22:24967877-24968131(+)$1	1	125	165	16.1519
(((.(((((((...(((....))).))))))).)))).))	chr6:33239761-33240000(+)$1	1	196	236	13.4726
(((.(.(((((...(((......))).)))))).))))))	chr17:27076851-27077133(+)$1	1	160	200	14.0120
(((((...(((((.(((....)))....))))))))).))	chr11:5290687-5290916(-)$1	1	76	116	17.2692
.((((((((..(..(((....)))..)..))).))))).)	chr16:88713416-88713683(-)$1	1	63	103	15.5869
(((((((((((...(((....)))....))).))))))))	chr14:78182037-78182305(+)$1	1	83	123	18.8507
((((((((.((...(((....)))...)).))))......	chr7:22857523-22857764(-)$1	1	166	206	12.9961
.((...(((((....((....))....)))))....)).)	chr2:232576553-232576793(+)$1	1	194	234	14.3954
(((((.(((..((((((....))))))...)))))))).)	chr19:19636890-19637167(+)$1	1	52	92	12.0140
.((...((..(.((((....)))).)...)).))))))))	chr17:39680112-39680351(-)$1	1	160	200	12.5084
(..((((((...(.(((....))).)))))))..))))))	chr9:127623726-127623934(-)$1	1	150	190	14.2425
...((((.((((.(((.....))).).)))))))))))))	chr2:97749335-97749626(-)$1	1	181	221	12.5848
((((.(((.(..(((((....)))))..)))).)))))))	chr12:56553942-56554204(+)$1	1	213	253	12.1087
((((((((((..(.(((....))).)..)))))))(((((	chr6:34385214-34385423(-)$1	1	55	95	13.8191
(((((...(((((.(((....)))....))))))))).))	chr11:5290596-5290848(-)$1	1	8	48	17.2692
((...(((((.((((((....))).))).)))))....))	chr7:99751475-99751733(+)$1	1	102	142	15.6678
(((.(((.((..(((......))).)).))).)))).)).	chr12:56552041-56552289(+)$1	1	127	167	12.4982
(((((...(((((.(((....)))....))))))))).))	chr11:5290716-5290930(-)$1	1	90	130	17.2692
(((((...(((((.(((....)))....))))))))).))	chr11:5290763-5290973(-)$1	1	133	173	17.2692
(..((((((...(.(((....))).)))))))..)))).(	chr9:127623676-127623926(-)$1	1	142	182	14.1342
((((...((((((((((....))).)).)).)))))))))	chr2:217069810-217070073(+)$1	1	19	59	13.0853
(((((((..((((.(((....))).).)))..))).....	chr5:140025014-140025284(-)$1	1	20	60	13.2658
.(((...((.(((((((....))))))).))....)))))	chr19:42364744-42364955(+)$1	1	125	165	13.2130
(((((((((((...(((....)))...)))........))	chr11:5269486-5269706(-)$1	1	3	43	13.8051
(((.((((((....(((....))))))))).)).))))))	chr10:106026953-106027276(+)$1	1	167	207	13.7847
(((..(((.(((.((((....)))))))))).))).).))	chr16:202819-203051(+)$1	1	111	151	14.4363
(.((..(((...(.(......).)....)))..)).))))	chr19:49611426-49611723(+)$1	1	85	125	12.9277
(((((.(.((((..(((....))))))).).))))))...	chr17:78109710-78109968(-)$1	1	69	109	14.3318
..((((...((..((((.....))))..))...)))).))	chr12:57038862-57039096(-)$1	1	138	178	11.3217
((((((.((((...((((....)))).)))..).))).))	chr12:57031949-57032218(-)$1	1	64	104	13.2311
(((((..(((.(..(((.....)))..))))..)).))))	chr14:77935425-77935762(+)$1	1	20	60	13.5823
((((((..(((.(((.(....).)))..))).)))...))	chr19:50363432-50363693(+)$1	1	148	188	14.9061
((..(((.((((((.(((...)))....)))))).)))..	chr15:44085807-44086031(+)$1	1	78	118	12.3856
((((((((((.((((......))))...))...)))))))	chr16:29708525-29708917(+)$1	1	6	46	13.1585
(((..(((((((..(((....))))))))....))..)))	chr1:45480367-45480608(+)$1	1	99	139	14.3307
((.((((.(((((.(......).)))))))).).))))))	chrX:119007179-119007452(+)$1	1	153	193	11.1115
(((((...(((((.(((....)))....))))))))).))	chr11:5290773-5290997(-)$1	1	157	197	17.2692
.((((((((((((.(((....)))......))))))))))	chr19:38743433-38743695(-)$1	1	31	71	15.5556
.(((...(((((...((....))....)))))...)))))	chr10:106026907-106027153(+)$1	1	104	144	15.4252
(((((...(((((.(((....)))....))))))))).))	chr11:5290797-5291006(-)$1	1	166	206	17.2692
(((((((...(((.(((....))).)))......))))))	chr16:31201527-31201820(+)$1	1	7	47	13.6628
.((((..(((.((((((....)))))).)))...))))..	chr5:159855563-159855823(+)$1	1	192	232	13.4649
(((..(((.((((.(((......))).)))).)))....)	chr16:88876377-88876625(-)$1	1	103	143	12.9682

#PSSM
c : 0.25	[ : 0.12	f : 0.10	d : 0.10	e : 0.09	g : 0.07	! : 0.05	= : 0.05	# : 0.03	b : 0.03	i : 0.01	" : 0.01	G : 0.01	
d : 0.20	c : 0.14	f : 0.10	e : 0.10	= : 0.09	b : 0.09	g : 0.05	! : 0.05	[ : 0.03	" : 0.03	a : 0.01	# : 0.01	i : 0.01	B : 0.01	
d : 0.21	c : 0.12	f : 0.10	e : 0.10	b : 0.10	= : 0.09	! : 0.07	g : 0.05	" : 0.05	i : 0.01	B : 0.01	[ : 0.01	
d : 0.21	f : 0.12	! : 0.10	e : 0.09	[ : 0.09	= : 0.07	g : 0.07	" : 0.07	c : 0.07	b : 0.05	a : 0.01	
d : 0.21	" : 0.12	f : 0.10	c : 0.10	g : 0.09	e : 0.09	! : 0.09	= : 0.07	[ : 0.03	i : 0.01	a : 0.01	b : 0.01	
" : 0.21	c : 0.18	e : 0.10	[ : 0.09	g : 0.07	= : 0.07	d : 0.07	f : 0.05	! : 0.05	$ : 0.03	i : 0.01	b : 0.01	
c : 0.21	" : 0.20	e : 0.12	g : 0.07	= : 0.07	d : 0.05	f : 0.05	! : 0.05	$ : 0.03	a : 0.03	b : 0.03	i : 0.01	[ : 0.01	
c : 0.21	" : 0.16	e : 0.14	[ : 0.10	= : 0.07	g : 0.05	! : 0.05	f : 0.05	$ : 0.03	b : 0.03	i : 0.01	d : 0.01	a : 0.01	
e : 0.25	c : 0.23	[ : 0.09	f : 0.07	g : 0.05	" : 0.05	! : 0.05	b : 0.05	$ : 0.03	= : 0.03	d : 0.03	i : 0.01	
e : 0.23	c : 0.23	" : 0.09	b : 0.07	g : 0.05	d : 0.05	! : 0.05	[ : 0.03	$ : 0.03	= : 0.03	f : 0.03	# : 0.01	i : 0.01	a : 0.01	
c : 0.20	e : 0.20	! : 0.09	" : 0.07	b : 0.07	[ : 0.07	a : 0.05	g : 0.05	# : 0.05	d : 0.05	= : 0.03	i : 0.01	f : 0.01	
" : 0.18	e : 0.16	c : 0.14	! : 0.09	# : 0.07	d : 0.07	[ : 0.05	a : 0.05	f : 0.05	= : 0.03	b : 0.03	i : 0.01	g : 0.01	
e : 0.16	" : 0.16	! : 0.14	c : 0.10	a : 0.09	# : 0.07	[ : 0.05	f : 0.05	d : 0.05	= : 0.03	i : 0.01	b : 0.01	g : 0.01	
[ : 0.29	" : 0.14	c : 0.12	! : 0.12	d : 0.12	# : 0.05	f : 0.05	e : 0.03	b : 0.01	g : 0.01	
c : 0.61	d : 0.14	e : 0.03	! : 0.03	" : 0.03	f : 0.03	a : 0.03	# : 0.01	g : 0.01	[ : 0.01	
c : 0.61	d : 0.12	o : 0.07	b : 0.05	e : 0.03	f : 0.03	! : 0.01	g : 0.01	[ : 0.01	
c : 0.56	d : 0.10	o : 0.09	b : 0.05	e : 0.03	n : 0.03	a : 0.03	f : 0.03	m : 0.01	g : 0.01	
m : 0.72	o : 0.12	n : 0.09	c : 0.03	d : 0.01	
m : 0.74	o : 0.12	n : 0.09	l : 0.03	
m : 0.74	o : 0.12	n : 0.09	l : 0.03	
m : 0.72	o : 0.12	n : 0.09	l : 0.03	d : 0.01	
c : 0.56	d : 0.09	a : 0.07	n : 0.05	o : 0.05	b : 0.05	e : 0.03	f : 0.03	g : 0.01	m : 0.01	
c : 0.60	d : 0.14	b : 0.05	] : 0.05	e : 0.03	o : 0.03	f : 0.03	2 : 0.01	g : 0.01	
c : 0.65	d : 0.14	e : 0.05	4 : 0.03	f : 0.03	2 : 0.01	3 : 0.01	g : 0.01	a : 0.01	
] : 0.25	4 : 0.20	d : 0.14	c : 0.10	e : 0.07	2 : 0.05	3 : 0.05	f : 0.05	i : 0.01	g : 0.01	6 : 0.01	
4 : 0.20	c : 0.14	a : 0.10	2 : 0.09	e : 0.07	d : 0.07	3 : 0.07	b : 0.05	f : 0.05	] : 0.03	g : 0.03	= : 0.01	i : 0.01	6 : 0.01	
4 : 0.20	c : 0.14	] : 0.10	2 : 0.10	3 : 0.09	f : 0.09	b : 0.05	a : 0.03	d : 0.03	g : 0.03	e : 0.03	= : 0.01	i : 0.01	6 : 0.01	
c : 0.20	4 : 0.16	2 : 0.10	e : 0.10	] : 0.09	3 : 0.07	d : 0.05	f : 0.05	a : 0.03	g : 0.03	= : 0.01	i : 0.01	b : 0.01	6 : 0.01	
c : 0.27	e : 0.21	] : 0.07	b : 0.07	f : 0.07	g : 0.05	3 : 0.05	2 : 0.03	d : 0.03	6 : 0.03	4 : 0.01	= : 0.01	i : 0.01	a : 0.01	
c : 0.27	e : 0.23	b : 0.10	f : 0.09	g : 0.05	4 : 0.03	3 : 0.03	] : 0.03	d : 0.03	6 : 0.03	= : 0.01	i : 0.01	a : 0.01	
e : 0.23	c : 0.21	f : 0.07	d : 0.07	] : 0.07	g : 0.05	b : 0.05	3 : 0.05	4 : 0.03	= : 0.03	2 : 0.03	i : 0.01	8 : 0.01	6 : 0.01	
e : 0.23	] : 0.12	f : 0.09	c : 0.09	d : 0.07	3 : 0.07	2 : 0.07	4 : 0.05	g : 0.05	= : 0.03	a : 0.01	i : 0.01	8 : 0.01	b : 0.01	6 : 0.01	
e : 0.16	c : 0.14	2 : 0.10	d : 0.09	3 : 0.07	f : 0.05	g : 0.05	= : 0.05	] : 0.05	a : 0.05	4 : 0.05	b : 0.03	i : 0.01	8 : 0.01	6 : 0.01	
d : 0.23	c : 0.12	f : 0.07	= : 0.07	e : 0.07	4 : 0.07	2 : 0.07	] : 0.07	b : 0.07	g : 0.05	3 : 0.03	8 : 0.01	6 : 0.01	
d : 0.25	c : 0.14	f : 0.09	g : 0.09	= : 0.09	4 : 0.09	] : 0.05	e : 0.05	b : 0.05	8 : 0.03	i : 0.01	3 : 0.01	
d : 0.27	= : 0.09	4 : 0.09	c : 0.09	e : 0.09	] : 0.07	f : 0.07	g : 0.05	i : 0.03	3 : 0.03	8 : 0.03	: : 0.01	5 : 0.01	2 : 0.01	
d : 0.25	= : 0.10	c : 0.09	e : 0.09	4 : 0.07	f : 0.07	g : 0.05	b : 0.05	i : 0.03	3 : 0.03	8 : 0.03	F : 0.01	] : 0.01	5 : 0.01	a : 0.01	2 : 0.01	
] : 0.16	d : 0.10	e : 0.09	c : 0.09	= : 0.09	3 : 0.07	g : 0.07	b : 0.07	4 : 0.05	f : 0.05	i : 0.03	8 : 0.03	F : 0.01	: : 0.01	5 : 0.01	
c : 0.21	= : 0.09	g : 0.07	e : 0.07	d : 0.05	i : 0.05	a : 0.05	4 : 0.05	f : 0.05	] : 0.05	b : 0.05	F : 0.03	3 : 0.03	C : 0.01	8 : 0.01	: : 0.01	5 : 0.01	2 : 0.01	
c : 0.21	e : 0.09	b : 0.09	= : 0.09	2 : 0.07	i : 0.05	] : 0.05	g : 0.05	f : 0.05	4 : 0.03	F : 0.03	3 : 0.03	d : 0.03	C : 0.01	8 : 0.01	h : 0.01	5 : 0.01	

#score	773.6019556091236
#seq	55
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955PCQ_HNRNPA1_CDS_m1_run1.txt

#BEAR
ddda!!dddd####ffffffnnnnnffffff4444dddd2	chr1:161088100-161088509(+)$1	409	144	184	30.6298
dd$$$$$cccbb"""eeeeennnnneeeeebb]ccc333d	chr14:39650061-39650320(+)$1	259	83	123	31.4944

#otherMatches

#Seq PSSM
AGUCAAGGAGAGAGUCUUGGGAAAACCAAGGAUAGUUCCC	chr1:161088100-161088509(+)$1	409	144	184	30.6298
UUGAAAGUGUAGAACCUUCAGAAAAUGAAGCUAGCAAAGA	chr14:39650061-39650320(+)$1	259	83	123	31.4944

#DB
)))(..((((....((((((.....))))))....)))).	chr1:161088100-161088509(+)$1	1	144	184	30.6298
((.....(((((...(((((.....))))))).)))...)	chr14:39650061-39650320(+)$1	1	83	123	31.4944

#PSSM
d : 1.00	
d : 1.00	
d : 0.50	$ : 0.50	
a : 0.50	$ : 0.50	
! : 0.50	$ : 0.50	
! : 0.50	$ : 0.50	
d : 0.50	$ : 0.50	
d : 0.50	c : 0.50	
d : 0.50	c : 0.50	
d : 0.50	c : 0.50	
# : 0.50	b : 0.50	
# : 0.50	b : 0.50	
# : 0.50	" : 0.50	
# : 0.50	" : 0.50	
f : 0.50	" : 0.50	
f : 0.50	e : 0.50	
f : 0.50	e : 0.50	
f : 0.50	e : 0.50	
f : 0.50	e : 0.50	
f : 0.50	e : 0.50	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
f : 0.50	e : 0.50	
f : 0.50	e : 0.50	
f : 0.50	e : 0.50	
f : 0.50	e : 0.50	
f : 0.50	e : 0.50	
f : 0.50	b : 0.50	
4 : 0.50	b : 0.50	
4 : 0.50	] : 0.50	
4 : 0.50	c : 0.50	
4 : 0.50	c : 0.50	
d : 0.50	c : 0.50	
d : 0.50	3 : 0.50	
d : 0.50	3 : 0.50	
d : 0.50	3 : 0.50	
2 : 0.50	d : 0.50	

#score	62.12435540375
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF470JIH_PUS1_transcript_m3_run2.txt

#BEAR
nnnnndddd:ggggggglllggggggg:::::DDDDYYBB	chrM:12072-12277(+)$1	205	79	119	22.6812
nnnnnffffff:cccqqqqqqqqccc::::::EEEEEHHH	chrM:4189-4420(+)$1	231	175	215	21.2528
nnnnndddd:ggggggglllggggggg:DDDDDDDD::::	chrM:12059-12265(+)$1	206	92	132	21.5013
nnnnnffffff:cccqqqqqqqqccc::::::EEEEEHHH	chrM:4302-4537(+)$1	235	62	102	21.2528
nnnnnffffff:cccqqqqqqqqccc::::::EEEEEHHH	chrM:4220-4426(+)$1	206	144	184	21.2528
nnnnndddd:ggggggglllggggggg:DDDDDDDD::::	chrM:12055-12259(+)$1	204	96	136	21.5013
nnnnndddd:ggggggglllggggggg::BBEEEEE????	chrM:12065-12272(+)$1	207	86	126	21.3082

#otherMatches

#Seq PSSM
AACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGCUUA	chrM:12072-12277(+)$1	205	79	119	22.6812
ccaaaauucuccgugccaccuaucacaccccauccuaAAG	chrM:4189-4420(+)$1	231	175	215	21.2528
AACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGCUUA	chrM:12059-12265(+)$1	206	92	132	21.5013
ccaaaauucuccgugccaccuaucacaccccauccuaAAG	chrM:4302-4537(+)$1	235	62	102	21.2528
ccaaaauucuccgugccaccuaucacaccccauccuaAAG	chrM:4220-4426(+)$1	206	144	184	21.2528
AACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGCUUA	chrM:12055-12259(+)$1	204	96	136	21.5013
AACCAAAACAUCAGAUUGUGAAUCUGACAACAGAGGCUUA	chrM:12065-12272(+)$1	207	86	126	21.3082

#DB
.....)))).(((((((...))))))).....))))..))	chrM:12072-12277(+)$1	1	79	119	22.6812
.....)))))).(((........)))......))))))))	chrM:4189-4420(+)$1	1	175	215	21.2528
.....)))).(((((((...))))))).))))))))....	chrM:12059-12265(+)$1	1	92	132	21.5013
.....)))))).(((........)))......))))))))	chrM:4302-4537(+)$1	1	62	102	21.2528
.....)))))).(((........)))......))))))))	chrM:4220-4426(+)$1	1	144	184	21.2528
.....)))).(((((((...))))))).))))))))....	chrM:12055-12259(+)$1	1	96	136	21.5013
.....)))).(((((((...)))))))..)))))))....	chrM:12065-12272(+)$1	1	86	126	21.3082

#PSSM
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
d : 0.57	f : 0.42	
d : 0.57	f : 0.42	
d : 0.57	f : 0.42	
d : 0.57	f : 0.42	
: : 0.57	f : 0.42	
g : 0.57	f : 0.42	
g : 0.57	: : 0.42	
g : 0.57	c : 0.42	
g : 0.57	c : 0.42	
g : 0.57	c : 0.42	
g : 0.57	q : 0.42	
g : 0.57	q : 0.42	
l : 0.57	q : 0.42	
l : 0.57	q : 0.42	
l : 0.57	q : 0.42	
g : 0.57	q : 0.42	
g : 0.57	q : 0.42	
g : 0.57	q : 0.42	
g : 0.57	c : 0.42	
g : 0.57	c : 0.42	
g : 0.57	c : 0.42	
g : 0.57	: : 0.42	
: : 0.99	
: : 0.71	D : 0.28	
: : 0.57	D : 0.28	B : 0.14	
: : 0.57	D : 0.28	B : 0.14	
: : 0.57	D : 0.28	E : 0.14	
E : 0.57	D : 0.42	
E : 0.57	D : 0.42	
E : 0.57	D : 0.42	
E : 0.57	D : 0.42	
E : 0.42	: : 0.28	Y : 0.14	? : 0.14	
H : 0.42	: : 0.28	Y : 0.14	? : 0.14	
H : 0.42	: : 0.28	B : 0.14	? : 0.14	
H : 0.42	: : 0.28	B : 0.14	? : 0.14	

#score	150.75081991144282
#seq	7
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_UTR_m1_run2.txt

#BEAR
a[dddd[gggggggnnnnngggggggdddd]ab	chr11:57558807-57559077(+)$1	270	50	83	10.6786
ee"""iiiiiiiiirrrrrrrrriiiiiiiii6	chrX:110925408-110925623(+)$1	215	130	163	11.3839
ggccc[ccc[ddddnnnnnddddcccccc333g	chr3:140675264-140675527(+)$1	263	45	78	12.2089
fffffccc!!ddddnnnnndddd]ccc:iiiii	chr16:23505560-23505840(-)$1	280	171	204	10.9873
eee[ggggggg[aooooooa22gggggggeeee	chr14:50361089-50361339(+)$1	250	10	43	12.5871
bb[ccceeeee[bboooooobb]eeeee22ccc	chr3:9516640-9516895(+)$1	255	196	229	10.3916
eee[ccc!!cccbbnnnnnbb22ccc333ccc2	chr1:39796769-39797021(+)$1	252	190	223	11.2340
==="""dddd"""annnnna333dddd333===	chr20:42088301-42088553(+)$1	252	70	103	12.5472
####bb####ddddnnnnndddd333bb]iiii	chr3:156870803-156871058(-)$1	255	191	224	12.2850
ddd[bb####ddddoooooodddd22bb]dddd	chr6:138192239-138192500(+)$1	261	142	175	10.8402
bb!!dddd"""cccnnnnnccc333dddd]bbc	chr10:1038319-1038575(+)$1	256	107	140	11.3939
"""===========ppppppp===========]	chr12:131285889-131286163(-)$1	274	185	218	10.8044
ccc"""ccc!!cccooooooccc22ccc22ccc	chr12:6603171-6603431(+)$1	260	123	156	13.7387
ggggggg!!ddddoooooodddd22ggggggg:	chr11:74976953-74977218(-)$1	265	14	47	12.3378
cc[ccc[gggggggooooooggggggg]ccc]c	chr2:118860660-118860914(+)$1	254	50	83	13.7680
cc[==========ppppppp==========ccc	chr3:38539012-38539278(+)$1	266	180	213	10.7082
dd!!gggggggcccooooooccc]ggggggg22	chr16:89958489-89958736(+)$1	247	33	66	13.7820
!ccc"""gggggggooooooggggggg333ccc	chr6:83896645-83896907(-)$1	262	28	61	14.1453
ee[ccc[bb[ddddnnnnndddd]bbccc]eee	chr1:154242879-154243128(+)$1	249	180	213	11.2240
ddd"""eeeeebboooooobb]eeeee]dddd2	chr5:179047862-179048115(-)$1	253	75	108	10.4785
ggggg!!eeeee[annnnnaeeeee]ggggggg	chr3:20016982-20017259(+)$1	277	73	106	12.2503
==========cccmmmmccc4444=========	chr7:127011734-127011986(-)$1	252	143	176	11.3176
gg[ccc[bb[cccooooooccc]bb]cccgggg	chr5:38945334-38945607(-)$1	273	222	255	12.9676
##ccc!!cccddddnnnnndddd]ccc]cccff	chr5:179044942-179045168(-)$1	226	96	129	11.8910
eee!!ddddbb[aooooooa]bb22dddd]eee	chr1:226053533-226053743(-)$1	210	98	131	10.4004
[eeeee[iiiiiiiiillliiiiiiiiieeeee	chr11:62566072-62566324(-)$1	252	108	141	10.9638
hhh[ccc"""cccooooooccc22ccc]hhhhh	chr7:30407069-30407363(+)$1	294	238	271	12.7781
eee"""cccddddoooooodddd]ccc]eeeee	chr2:187370065-187370321(+)$1	256	51	84	12.5718
iiiiii[a!!eeeeemmmmeeeee22aiiiiii	chr2:191523768-191524051(+)$1	283	139	172	10.5240
ccc[gggggggeeeeellleeeee]ggggggg]	chr14:23795140-23795366(+)$1	226	131	164	10.8421
ccc[a[iiiiiiiiillliiiiiiiii]a]ccc	chr12:125263028-125263244(-)$1	216	131	164	12.5649
eeeeccceeeeeooooooeeeee333ccc]eee	chr6:27094106-27094320(-)$1	214	80	113	10.7386
ddd####ggggggglllggggggg4444dddd]	chr11:111728316-111728575(-)$1	259	33	66	9.9095
ii[===========qqqqqqqq===========	chr17:48817555-48817801(+)$1	246	21	54	10.9018
####ccc"""cccoooooocccccc22======	chr7:100481561-100481858(+)$1	297	124	157	14.0895
gg[eeeee"""bb[aooooooa]bb4444eeee	chr17:25634655-25634887(+)$1	232	118	151	10.7677
c"""ggggggg!!ccclllccc22gggggggcc	chr18:23663987-23664248(-)$1	261	109	142	11.8839
ccc"""gggggggoooooogggggggccc333d	chr16:66858647-66858910(-)$1	263	115	148	13.9327
a[bb####bb[cccnnnnnccc]bb4444bb]a	chr5:150121569-150121822(-)$1	253	183	216	10.4721
c####==========mmmm==========6666	chr7:104681155-104681452(+)$1	297	18	51	10.8885
gggg[eeeee[cccnnnnnccceeeeegggggg	chr8:124361504-124361783(-)$1	279	35	68	11.8837
bb[===========nnnnn===========]bb	chr16:3777317-3777606(-)$1	289	148	181	13.8065
gg!!==========nnnnn==========]ggg	chr5:133509309-133509575(-)$1	266	138	171	15.3683
cc[a[ccc[ddddoooooodddd]ccc]a]ccc	chr1:222906335-222906547(+)$1	212	5	38	13.3800
[eeeee!!bb[cccooooooccc]bb22eeeee	chr7:99697242-99697483(-)$1	241	120	153	11.1133
iiiiiiiii[ddddrrrrrrrrrdddd]iiiii	chr17:56083755-56084005(-)$1	250	1	34	10.5722
"ccc"""gggggggnnnnnggggggg22ccc33	chr7:148516021-148516267(-)$1	246	48	81	12.5911
gg"""dddd[cccooooooccc]ddddgggggg	chr3:43740899-43741138(+)$1	239	181	214	13.0589
''ddddgggggggaooooooa]ggggggg]ddd	chr19:54971839-54972093(+)$1	254	24	57	11.0627
========!!ddddoooooodddd333======	chr12:62954155-62954413(+)$1	258	62	95	14.9093
cc!!bb[iiiiiiiiimmmmiiiiiiiii333b	chr17:62498209-62498450(-)$1	241	166	199	10.8218
ccc[ccc!!eeeeennnnneeeeeccc]cccGG	chr8:41468142-41468409(+)$1	267	207	240	10.7953
eeee[ccc!!a[cccmmmmccc]a22ccc]eee	chr17:38323638-38323901(+)$1	263	65	98	10.2820
E==========bboooooobb]==========h	chr7:131163275-131163531(+)$1	256	156	189	13.2479
ggggg[a####ddddmmmmdddda]ggggggg2	chr6:15468661-15468915(+)$1	254	37	70	10.4425
ggggggg!!eeeeeooooooeeeee]ggggggg	chr7:150066644-150066908(+)$1	264	69	102	13.0174
d[ggggggg!!cccnnnnnccc22ggggggg22	chr3:156874735-156874993(-)$1	258	126	159	12.8518
gggg[eeeee!!bboooooobb22eeeee]ggg	chr19:10284450-10284706(-)$1	256	157	190	11.4925
ccc[bbaccc[ddddoooooodddd]ccc]a]b	chr18:33749920-33750175(+)$1	255	55	88	11.0019

#otherMatches

#Seq PSSM
GUGAAGUGAGGGGGUCUCUCUCCCUCCUUCUCC	chr11:57558807-57559077(+)$1	270	50	83	10.6786
AUCUCAGGGUUGGGUCUUUUAAuuuuaauuuuu	chrX:110925408-110925623(+)$1	215	130	163	11.3839
UAUAUACUAACUUAUGAAUUAAGUAGAUAAGCU	chr3:140675264-140675527(+)$1	263	45	78	12.2089
CAAGAUCCAGUCUCCGCAAGAGAAGGAAGCUCU	chr16:23505560-23505840(-)$1	280	171	204	10.9873
GUUACUGUUCUACAGUUUGGCGGGGACGGGGCU	chr14:50361089-50361339(+)$1	250	10	43	12.5871
CCAGGUGAGAUGAGAAAUUGCUGGUCUCUAGCC	chr3:9516640-9516895(+)$1	255	196	229	10.3916
ACCAAGACACAGGCCUAGUGCUUCUGGAAUCUC	chr1:39796769-39797021(+)$1	252	190	223	11.2340
CAUUACAAGGCAUCUAAUUGUUCCCUUCAUGUG	chr20:42088301-42088553(+)$1	252	70	103	12.5472
AAAGGAGUUGGGAUUUUGUGUUCAUGUCAAGCA	chr3:156870803-156871058(-)$1	255	191	224	12.2850
UCCUCAGGCUUUGUAUUUGAGCAAUAUGCGGAA	chr6:138192239-138192500(+)$1	261	142	175	10.8402
AGGACUUCAUAGACCUCACGUUGUCGAAGACUC	chr10:1038319-1038575(+)$1	256	107	140	11.3939
AUCCAUCUUCACUUCCGACGUGAGUGGGGGUGC	chr12:131285889-131286163(-)$1	274	185	218	10.8044
AUCAGAGCCGCGGGUGAGAUCCCCAGGUAAGAU	chr12:6603171-6603431(+)$1	260	123	156	13.7387
GGGCCGGCCCUGCCUCCACGUGGCUCCGGCUCC	chr11:74976953-74977218(-)$1	265	14	47	12.3378
UAGCUUAAGUGUUGCCAGUACAACAUUGGAGGU	chr2:118860660-118860914(+)$1	254	50	83	13.7680
UCACGCUUUGUCUUAUGAUCAGGCAAAGCGGGU	chr3:38539012-38539278(+)$1	266	180	213	10.7082
UGCAGGGAUCAGGCAGCCAAGCCUUGGUCCCCA	chr16:89958489-89958736(+)$1	247	33	66	13.7820
AUGUAAUUUUUGCAUUUGCUUGCAGAACCAGCA	chr6:83896645-83896907(-)$1	262	28	61	14.1453
UCCUCCUGUUCACCCUGGUGGUGUACGGAUGAG	chr1:154242879-154243128(+)$1	249	180	213	11.2240
UCAGUAUUCAAGUCAAACAACGUUGAAAUGGAU	chr5:179047862-179048115(-)$1	253	75	108	10.4785
GAAAAAUGAUUGACUUAUUGUAGUCCUUUUCUU	chr3:20016982-20017259(+)$1	277	73	106	12.2503
GUUUGGAGUUCAUUUUUGUGGAAAGACUUUAAA	chr7:127011734-127011986(-)$1	252	143	176	11.3176
auuaggucuuuuccacugugaacagcccugucc	chr5:38945334-38945607(-)$1	273	222	255	12.9676
UUGUCUUUCAGGCUAUGGAGGCUAUGAUGAUUA	chr5:179044942-179045168(-)$1	226	96	129	11.8910
CAGGACUCCCCAGAGAUGCCAGGAAGGAGACUG	chr1:226053533-226053743(-)$1	210	98	131	10.4004
GUCAGGUGGGGAGUGGGGGCCAUUUUUCCCUGA	chr11:62566072-62566324(-)$1	252	108	141	10.9638
AUUCCAGCUCAGAUAACAUUUUCCCUGAAGUUA	chr7:30407069-30407363(+)$1	294	238	271	12.7781
GCAACUAAGCACUAUUUGAGGUGACUUCUGUGG	chr2:187370065-187370321(+)$1	256	51	84	12.5718
UGCGGCCUUACCCAGGACCCUGGGGGAGUUGCA	chr2:191523768-191524051(+)$1	283	139	172	10.5240
GAGGUGGGAGGUGGAUUUUGUUUAUUUUUUUAG	chr14:23795140-23795366(+)$1	226	131	164	10.8421
GCCAGCCAGGCCUGGCCGCUGGGCCUGACCGGC	chr12:125263028-125263244(-)$1	216	131	164	12.5649
UGGAGUGGCUGAAACUUCUCAGCAGGCGCAUCU	chr6:27094106-27094320(-)$1	214	80	113	10.7386
AUUUUUAAUCAGUUUUUAAUUGAUACCUAAUUA	chr11:111728316-111728575(-)$1	259	33	66	9.9095
UUUUUAAAAAGAAAAAUAACUCUUUUUUUUUGG	chr17:48817555-48817801(+)$1	246	21	54	10.9018
CCCAGGUUUCGGUCUAAGUACCACCCAGAUGAG	chr7:100481561-100481858(+)$1	297	124	157	14.0895
UGGCAGCAAUAUUGGUGUGAUUGAGGUUAUGCU	chr17:25634655-25634887(+)$1	232	118	151	10.7677
aucuggccagugggagccccucaagcuggcuuc	chr18:23663987-23664248(-)$1	261	109	142	11.8839
ACUUUAGUUUCUUCCUUCAAAGAAGCAGUAUCG	chr16:66858647-66858910(-)$1	263	115	148	13.9327
GGAAAAAAUUGAGUAAAAGACUGAAGAUCUUGC	chr5:150121569-150121822(-)$1	253	183	216	10.4721
UAAGCAAAUUUCAAUUUAUAUUGAGAUUUUAAU	chr7:104681155-104681452(+)$1	297	18	51	10.8885
AUUACUGAAUGAUAUAGACUGUGUUCAUAGUAU	chr8:124361504-124361783(-)$1	279	35	68	11.8837
GGGGAGGGGGGUUUUGUUUGGAUUCUUUUUGUC	chr16:3777317-3777606(-)$1	289	148	181	13.8065
UGAAUUAGUGAGGGUCGUUCUCUCAUUAAAUGG	chr5:133509309-133509575(-)$1	266	138	171	15.3683
UAAGUUUCAGGUCAGUAUAGGCCCGAAUCAUGU	chr1:222906335-222906547(+)$1	212	5	38	13.3800
AUCGGGAACAGGUGGCUCUGUAUGUGGACCUGG	chr7:99697242-99697483(-)$1	241	120	153	11.1133
GCGCAUGUGGGCUCUUCCACGUUGGGUGCGCAU	chr17:56083755-56084005(-)$1	250	1	34	10.5722
AUAUGAGGUAGAAAAGUUGUUUUUACGGGUACU	chr7:148516021-148516267(-)$1	246	48	81	12.5911
aggaccccaaggagauuuguuuaugggcuuauu	chr3:43740899-43741138(+)$1	239	181	214	13.0589
AUGGGGGGGCCUCCCCGCUCGUGGGGCCCUCCC	chr19:54971839-54972093(+)$1	254	24	57	11.0627
AGAAAAUUUGAUCGCUUUUAUGAUAAUAGUUUU	chr12:62954155-62954413(+)$1	258	62	95	14.9093
AAAUGGUAAAUAUUUCAAAUGAAGUAUUUUUCC	chr17:62498209-62498450(-)$1	241	166	199	10.8218
CAUGCCUGAAGGACAGUUAGUUCUGGGAAUGGU	chr8:41468142-41468409(+)$1	267	207	240	10.7953
AGAGCCCUCUAGAAUUCUUAUUGUUUAGGCCUC	chr17:38323638-38323901(+)$1	263	65	98	10.2820
UCUGGGUAAGUAUUGCAGUAUAAUUUAUCCAGC	chr7:131163275-131163531(+)$1	256	156	189	13.2479
UCAUUGUGGUGUUCCUUCUGGAAAGGGUGAGGG	chr6:15468661-15468915(+)$1	254	37	70	10.4425
AGAGGAGCUCAGAGCCUCACUUCUGUUUUCUCU	chr7:150066644-150066908(+)$1	264	69	102	13.0174
AGCUACAUUUACCAAAGCCUGGGUGAUGUGGAG	chr3:156874735-156874993(-)$1	258	126	159	12.8518
ACGGUAAGAAUAGUUACUAUACCUUUCUUUUUG	chr19:10284450-10284706(-)$1	256	157	190	11.4925
AGAAACCUUGCAAAGAGAAGGCUUUACAGUGUG	chr18:33749920-33750175(+)$1	255	55	88	11.0019

#DB
(.((((.(((((((.....))))))))))).))	chr11:57558807-57559077(+)$1	1	50	83	10.6786
((...(((((((((.........))))))))).	chrX:110925408-110925623(+)$1	1	130	163	11.3839
(((((.(((.((((.....))))))))))...)	chr3:140675264-140675527(+)$1	1	45	78	12.2089
)))))(((..((((.....)))).))).(((((	chr16:23505560-23505840(-)$1	1	171	204	10.9873
(((.(((((((.(......)..)))))))))))	chr14:50361089-50361339(+)$1	1	10	43	12.5871
((.((((((((.((......)).)))))..)))	chr3:9516640-9516895(+)$1	1	196	229	10.3916
(((.(((..(((((.....))..)))...))).	chr1:39796769-39797021(+)$1	1	190	223	11.2340
(((...((((...(.....)...))))...)))	chr20:42088301-42088553(+)$1	1	70	103	12.5472
....((....((((.....))))...)).))))	chr3:156870803-156871058(-)$1	1	191	224	12.2850
(((.((....((((......))))..)).))))	chr6:138192239-138192500(+)$1	1	142	175	10.8402
((..((((...(((.....)))...)))).)))	chr10:1038319-1038575(+)$1	1	107	140	11.3939
...(((((((((((.......))))))))))).	chr12:131285889-131286163(-)$1	1	185	218	10.8044
(((...(((..(((......)))..)))..)))	chr12:6603171-6603431(+)$1	1	123	156	13.7387
(((((((..((((......))))..))))))).	chr11:74976953-74977218(-)$1	1	14	47	12.3378
((.(((.(((((((......))))))).))).)	chr2:118860660-118860914(+)$1	1	50	83	13.7680
((.((((((((((.......)))))))))))))	chr3:38539012-38539278(+)$1	1	180	213	10.7082
((..((((((((((......))).)))))))..	chr16:89958489-89958736(+)$1	1	33	66	13.7820
.(((...(((((((......)))))))...)))	chr6:83896645-83896907(-)$1	1	28	61	14.1453
((.(((.((.((((.....)))).))))).)))	chr1:154242879-154243128(+)$1	1	180	213	11.2240
(((...(((((((......)).))))).)))).	chr5:179047862-179048115(-)$1	1	75	108	10.4785
(((((..(((((.(.....)))))).)))))))	chr3:20016982-20017259(+)$1	1	73	106	12.2503
(((((((((((((....)))....)))))))))	chr7:127011734-127011986(-)$1	1	143	176	11.3176
((.(((.((.(((......))).)).)))))))	chr5:38945334-38945607(-)$1	1	222	255	12.9676
..(((..(((((((.....)))).))).)))))	chr5:179044942-179045168(-)$1	1	96	129	11.8910
(((..((((((.(......).))..)))).)))	chr1:226053533-226053743(-)$1	1	98	131	10.4004
.(((((.(((((((((...))))))))))))))	chr11:62566072-62566324(-)$1	1	108	141	10.9638
(((.(((...(((......)))..))).)))))	chr7:30407069-30407363(+)$1	1	238	271	12.7781
(((...(((((((......)))).))).)))))	chr2:187370065-187370321(+)$1	1	51	84	12.5718
((((((.(..(((((....)))))..)))))))	chr2:191523768-191524051(+)$1	1	139	172	10.5240
(((.((((((((((((...))))).))))))).	chr14:23795140-23795366(+)$1	1	131	164	10.8421
(((.(.(((((((((...))))))))).).)))	chr12:125263028-125263244(-)$1	1	131	164	12.5649
((((((((((((......)))))...))).)))	chr6:27094106-27094320(-)$1	1	80	113	10.7386
(((....(((((((...)))))))....)))).	chr11:111728316-111728575(-)$1	1	33	66	9.9095
((.(((((((((((........)))))))))))	chr17:48817555-48817801(+)$1	1	21	54	10.9018
....(((...(((......))))))..))))))	chr7:100481561-100481858(+)$1	1	124	157	14.0895
((.(((((...((.(......).))....))))	chr17:25634655-25634887(+)$1	1	118	151	10.7677
(...(((((((..(((...)))..)))))))))	chr18:23663987-23664248(-)$1	1	109	142	11.8839
(((...(((((((......))))))))))...)	chr16:66858647-66858910(-)$1	1	115	148	13.9327
(.((....((.(((.....))).))....)).)	chr5:150121569-150121822(-)$1	1	183	216	10.4721
(....((((((((((....))))))))))....	chr7:104681155-104681452(+)$1	1	18	51	10.8885
((((.(((((.(((.....))))))))))))))	chr8:124361504-124361783(-)$1	1	35	68	11.8837
((.(((((((((((.....))))))))))).))	chr16:3777317-3777606(-)$1	1	148	181	13.8065
((..((((((((((.....)))))))))).)))	chr5:133509309-133509575(-)$1	1	138	171	15.3683
((.(.(((.((((......)))).))).).)))	chr1:222906335-222906547(+)$1	1	5	38	13.3800
.(((((..((.(((......))).))..)))))	chr7:99697242-99697483(-)$1	1	120	153	11.1133
(((((((((.((((.........)))).)))))	chr17:56083755-56084005(-)$1	1	1	34	10.5722
.(((...(((((((.....)))))))..)))..	chr7:148516021-148516267(-)$1	1	48	81	12.5911
((...((((.(((......))).))))))))))	chr3:43740899-43741138(+)$1	1	181	214	13.0589
..((((((((((((......).))))))).)))	chr19:54971839-54972093(+)$1	1	24	57	11.0627
((((((((..((((......))))...))))))	chr12:62954155-62954413(+)$1	1	62	95	14.9093
((..((.(((((((((....)))))))))...)	chr17:62498209-62498450(-)$1	1	166	199	10.8218
(((.(((..(((((.....)))))))).)))))	chr8:41468142-41468409(+)$1	1	207	240	10.7953
((((.(((..(.(((....))).)..))).)))	chr17:38323638-38323901(+)$1	1	65	98	10.2820
(((((((((((((......)).))))))))))(	chr7:131163275-131163531(+)$1	1	156	189	13.2479
(((((.(....((((....))))).))))))).	chr6:15468661-15468915(+)$1	1	37	70	10.4425
(((((((..(((((......))))).)))))))	chr7:150066644-150066908(+)$1	1	69	102	13.0174
(.(((((((..(((.....)))..)))))))..	chr3:156874735-156874993(-)$1	1	126	159	12.8518
((((.(((((..((......))..))))).)))	chr19:10284450-10284706(-)$1	1	157	190	11.4925
(((.((((((.((((......)))).))).).)	chr18:33749920-33750175(+)$1	1	55	88	11.0019

#PSSM
c : 0.20	g : 0.18	e : 0.13	d : 0.08	b : 0.05	= : 0.05	# : 0.05	i : 0.05	a : 0.03	" : 0.03	[ : 0.03	f : 0.01	! : 0.01	h : 0.01	' : 0.01	E : 0.01	
c : 0.20	g : 0.18	e : 0.16	= : 0.06	# : 0.06	d : 0.06	[ : 0.05	b : 0.05	i : 0.05	" : 0.03	f : 0.01	h : 0.01	' : 0.01	
c : 0.16	[ : 0.15	e : 0.13	g : 0.11	d : 0.08	" : 0.06	= : 0.06	! : 0.06	# : 0.05	i : 0.03	f : 0.01	h : 0.01	b : 0.01	
" : 0.13	c : 0.13	[ : 0.13	= : 0.11	g : 0.11	! : 0.08	e : 0.08	# : 0.06	d : 0.03	i : 0.03	f : 0.01	b : 0.01	a : 0.01	
c : 0.18	" : 0.15	g : 0.15	= : 0.13	b : 0.06	[ : 0.06	d : 0.05	e : 0.05	# : 0.05	i : 0.03	f : 0.01	! : 0.01	a : 0.01	
c : 0.20	= : 0.15	g : 0.11	" : 0.11	d : 0.08	e : 0.08	b : 0.06	i : 0.05	[ : 0.05	! : 0.03	# : 0.03	
c : 0.18	g : 0.15	= : 0.15	[ : 0.11	e : 0.08	d : 0.06	# : 0.06	i : 0.05	! : 0.05	" : 0.03	a : 0.03	
g : 0.20	= : 0.15	c : 0.13	e : 0.11	i : 0.08	! : 0.08	d : 0.06	# : 0.06	b : 0.03	" : 0.03	a : 0.01	
g : 0.20	! : 0.13	= : 0.13	e : 0.10	i : 0.08	c : 0.08	" : 0.06	b : 0.06	d : 0.05	# : 0.05	[ : 0.01	
g : 0.18	e : 0.13	= : 0.13	! : 0.10	[ : 0.08	i : 0.06	d : 0.06	" : 0.06	c : 0.05	# : 0.05	b : 0.05	
g : 0.18	d : 0.18	e : 0.11	= : 0.11	c : 0.10	i : 0.06	[ : 0.06	" : 0.05	! : 0.05	b : 0.01	a : 0.01	# : 0.01	
d : 0.22	c : 0.22	g : 0.11	= : 0.10	e : 0.10	i : 0.06	[ : 0.06	b : 0.05	! : 0.03	" : 0.01	
d : 0.22	c : 0.22	g : 0.11	b : 0.10	= : 0.10	i : 0.06	e : 0.06	a : 0.03	" : 0.01	[ : 0.01	o : 0.01	! : 0.01	
o : 0.22	d : 0.16	c : 0.15	g : 0.08	= : 0.08	i : 0.06	e : 0.06	b : 0.05	a : 0.05	p : 0.01	m : 0.01	[ : 0.01	
o : 0.40	n : 0.28	i : 0.05	r : 0.03	p : 0.03	e : 0.03	c : 0.03	d : 0.03	m : 0.01	l : 0.01	q : 0.01	a : 0.01	= : 0.01	
o : 0.44	n : 0.28	m : 0.08	r : 0.03	p : 0.03	i : 0.03	l : 0.03	e : 0.01	q : 0.01	c : 0.01	
o : 0.44	n : 0.28	m : 0.10	l : 0.08	r : 0.03	p : 0.03	q : 0.01	
o : 0.44	n : 0.28	m : 0.08	l : 0.06	r : 0.03	p : 0.03	c : 0.01	g : 0.01	q : 0.01	
o : 0.42	n : 0.28	m : 0.08	l : 0.05	r : 0.03	p : 0.03	c : 0.01	i : 0.01	e : 0.01	g : 0.01	q : 0.01	
o : 0.22	c : 0.18	d : 0.15	g : 0.06	a : 0.06	e : 0.06	b : 0.05	= : 0.05	r : 0.03	p : 0.03	i : 0.03	q : 0.01	m : 0.01	
c : 0.22	d : 0.18	g : 0.10	e : 0.10	b : 0.08	= : 0.06	i : 0.05	r : 0.03	o : 0.03	2 : 0.01	3 : 0.01	p : 0.01	4 : 0.01	] : 0.01	q : 0.01	a : 0.01	
c : 0.22	d : 0.20	g : 0.10	e : 0.10	= : 0.08	b : 0.05	] : 0.05	i : 0.05	r : 0.03	2 : 0.03	3 : 0.01	4 : 0.01	q : 0.01	a : 0.01	
d : 0.20	g : 0.13	e : 0.13	= : 0.11	] : 0.10	2 : 0.08	c : 0.06	i : 0.05	r : 0.03	3 : 0.03	4 : 0.01	b : 0.01	
g : 0.13	e : 0.13	] : 0.11	= : 0.11	2 : 0.11	d : 0.10	i : 0.06	c : 0.05	3 : 0.05	b : 0.05	a : 0.03	4 : 0.01	
g : 0.16	c : 0.15	= : 0.13	e : 0.10	2 : 0.10	b : 0.08	i : 0.06	d : 0.06	3 : 0.06	] : 0.03	4 : 0.01	
g : 0.22	c : 0.15	= : 0.13	d : 0.08	i : 0.06	e : 0.06	2 : 0.06	] : 0.06	3 : 0.05	4 : 0.05	b : 0.03	
c : 0.23	g : 0.20	= : 0.13	d : 0.10	i : 0.06	e : 0.06	4 : 0.05	2 : 0.05	3 : 0.03	b : 0.03	a : 0.01	
g : 0.20	= : 0.16	] : 0.15	c : 0.13	i : 0.06	d : 0.05	3 : 0.05	4 : 0.05	e : 0.03	b : 0.03	2 : 0.03	: : 0.01	
g : 0.20	c : 0.18	= : 0.16	d : 0.08	i : 0.08	e : 0.06	3 : 0.05	2 : 0.03	] : 0.03	a : 0.03	4 : 0.03	h : 0.01	
] : 0.18	g : 0.18	= : 0.13	i : 0.08	3 : 0.08	e : 0.08	c : 0.08	d : 0.06	2 : 0.03	h : 0.01	b : 0.01	6 : 0.01	
g : 0.22	c : 0.18	e : 0.15	= : 0.11	i : 0.08	d : 0.06	3 : 0.05	] : 0.03	b : 0.03	h : 0.01	6 : 0.01	a : 0.01	
g : 0.16	e : 0.15	c : 0.13	= : 0.11	i : 0.08	3 : 0.06	d : 0.06	] : 0.05	b : 0.03	2 : 0.03	a : 0.01	f : 0.01	h : 0.01	6 : 0.01	G : 0.01	
e : 0.15	c : 0.15	g : 0.13	2 : 0.08	= : 0.08	b : 0.06	i : 0.06	d : 0.05	] : 0.05	6 : 0.03	h : 0.03	: : 0.01	f : 0.01	a : 0.01	3 : 0.01	G : 0.01	

#score	701.8828950386169
#seq	59
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF540UOQ_LIN28B_UTR_m1_run2.txt

#BEAR
ddd[ddddvvvvvvvvvvvvvdddd	chr8:21862727-21862995(+)$1	268	196	221	22.0615
========ttttttttttt======	chr2:669654-669904(-)$1	250	201	226	24.0891
b[fffffftttttttttttffffff	chr6:34557066-34557303(-)$1	237	28	53	23.3037
eeeee!!attttttttttta22eee	chr3:44486697-44486942(-)$1	245	173	198	23.3676
gggg[cccwwwwwwwwwwwwwwccc	chr17:40351479-40351744(-)$1	265	230	255	22.1339
bbfffffftttttttttttffffff	chr19:8530217-8530459(+)$1	242	202	227	22.9262
dddd[cccvvvvvvvvvvvvvccc]	chr19:54711280-54711542(+)$1	262	0	25	23.4045
eeecccvvvvvvvvvvvvvccc]ee	chr19:18418206-18418414(-)$1	208	28	53	22.7264
e[bb[bbvvvvvvvvvvvvvbbbb]	chr1:155217167-155217468(-)$1	301	14	39	21.7518
::fffffftttttttttttffffff	chr10:70102017-70102238(+)$1	221	124	149	21.3557
dddd[ccctttttttttttccc22d	chr8:30657072-30657290(-)$1	218	29	54	23.4471
a!!eeeeettttttttttteeeee2	chr17:39847409-39847628(+)$1	219	38	63	23.3047
===!!ccctttttttttttccc444	chr16:20781345-20781588(+)$1	243	58	83	24.2563
gggggggvvvvvvvvvvvvvggggg	chr11:62334770-62334972(-)$1	202	15	40	23.8246
eeeeeeeevvvvvvvvvvvvveeee	chr14:24606427-24606681(+)$1	254	79	104	23.1679
hhhhhhwwwwwwwwwwwwwwhhhhh	chr8:37612488-37612758(+)$1	270	159	184	20.0284
eeee[ccctttttttttttccceee	chr17:80572858-80573128(-)$1	270	108	133	24.4116
eeeeeeeettttttttttteeeee:	chr22:36677766-36678016(-)$1	250	88	113	22.4722
ddccc[bbtttttttttttbb22cc	chr12:4768101-4768372(+)$1	271	197	222	22.2347
dddd[cccvvvvvvvvvvvvvcccd	chr3:136667234-136667504(+)$1	270	43	68	23.2646
===!!ccctttttttttttccc22=	chr2:62095650-62095906(-)$1	256	166	191	24.1316
eggggggguuuuuuuuuuuuggggg	chr11:10818820-10819059(-)$1	239	111	136	23.8065
[a[eeeeeuuuuuuuuuuuueeeee	chr20:44526543-44526805(+)$1	262	115	140	23.4941
ggggggguuuuuuuuuuuugggggg	chr18:10552245-10552477(+)$1	232	35	60	23.3819
eee!!cccvvvvvvvvvvvvvccce	chr1:145441697-145441912(+)$1	215	89	114	23.6929
[cccyyyyyyyyyyyyyyyyccc]b	chr15:43483491-43483824(+)$1	333	22	47	20.0161
ffff[cccuuuuuuuuuuuuccc]f	chr16:29679259-29679515(+)$1	256	79	104	23.8585
ggggggguuuuuuuuuuuugggggg	chr6:159187653-159187870(-)$1	217	11	36	23.3819
iiiiiivvvvvvvvvvvvviiiiii	chr11:67379509-67379766(+)$1	257	222	247	22.6678
eeee[bbvvvvvvvvvvvvvbb]ee	chr9:127639258-127639527(+)$1	269	17	42	22.9485
""fffffftttttttttttffffff	chr16:2112870-2113102(+)$1	232	113	138	23.3596
!!eeeeewwwwwwwwwwwwwweeee	chr15:72499367-72499593(-)$1	226	102	127	22.1219
========ttttttttttt======	chr21:27096759-27097030(-)$1	271	95	120	24.0891
EEfffffftttttttttttffffff	chr1:55315529-55315754(-)$1	225	67	92	21.3486
ggg!!cccwwwwwwwwwwwwwwccc	chr14:24607207-24607418(+)$1	211	173	198	22.0503
b[fffffftttttttttttffffff	chr4:141472550-141472843(+)$1	293	131	156	23.3037
[ccc[cccuuuuuuuuuuuuccc]c	chr22:20099854-20100107(-)$1	253	91	116	24.1411
b[ddddbbtttttttttttbb]ddd	chr11:129992106-129992353(+)$1	247	179	204	22.0872
g####bbvvvvvvvvvvvvvbb444	chr6:30037763-30038035(+)$1	272	18	43	22.0657
hhhhhhhhttttttttttthhhhhh	chr1:175135663-175135922(-)$1	259	87	112	21.3180
""eeeeeuuuuuuuuuuuueeeee]	chr1:26159261-26159513(+)$1	252	109	134	22.9037
dd[eeeeeuuuuuuuuuuuueeeee	chr1:32641541-32641801(+)$1	260	225	250	23.2735
dddd[ccctttttttttttccc]dd	chr11:18424457-18424661(+)$1	204	157	182	23.7624
==ffffffuuuuuuuuuuuufffff	chr12:133302762-133303025(-)$1	263	157	182	23.4042
gg:eeeeettttttttttteeeee:	chr3:138430953-138431168(-)$1	215	137	162	21.4778
ggggggguuuuuuuuuuuugggggg	chr17:79214788-79215117(+)$1	329	130	155	23.3819
eeeeeyyyyyyyyyyyyyyyyeeee	chr1:93300251-93300476(+)$1	225	133	158	20.4816
eee:dddduuuuuuuuuuuuddddB	chr11:59343527-59343777(-)$1	250	155	180	20.3598
dddd[ccctttttttttttccc22d	chr8:30657111-30657363(-)$1	252	102	127	23.4471
bb[eeeeettttttttttteeeee]	chr2:87003814-87004051(+)$1	237	87	112	23.1163
fffffffftttttttttttffffff	chr22:18184910-18185151(+)$1	241	43	68	23.1795
[cccddddwwwwwwwwwwwwwwddd	chr17:17152136-17152390(-)$1	254	82	107	20.6948
fffff[bbtttttttttttbb]fff	chr11:320660-320882(-)$1	222	164	189	22.6354
hhhhhhhhuuuuuuuuuuuuhhhhh	chr5:138264832-138265065(+)$1	233	23	48	21.4443
====ddddtttttttttttdddd::	chr17:40353273-40353599(-)$1	326	227	252	20.8434
ggggggguuuuuuuuuuuugggggg	chr17:79804247-79804496(-)$1	249	140	165	23.3819
!!ffffffuuuuuuuuuuuufffff	chr12:49666905-49667162(+)$1	257	211	236	23.4331
cc[eeeeevvvvvvvvvvvvveeee	chr4:122737709-122737977(-)$1	268	12	37	23.2252
fff!!cccwwwwwwwwwwwwwwccc	chr16:57187771-57188023(-)$1	252	3	28	21.6742

#otherMatches

#Seq PSSM
AAACAUGUACAUUUUUUCAUAACAU	chr8:21862727-21862995(+)$1	268	196	221	22.0615
UAAACAUGUCUCAAACAAUUGUGUU	chr2:669654-669904(-)$1	250	201	226	24.0891
CUCUGAUAUUUUCACAGCCUGUUAG	chr6:34557066-34557303(-)$1	237	28	53	23.3037
UCAGACUCCUCCCCACUCCGUUUCU	chr3:44486697-44486942(-)$1	245	173	198	23.3676
ACACAAGUCCUCAAAAGUUUCAGCU	chr17:40351479-40351744(-)$1	265	230	255	22.1339
UCUAAAGUAGAAAAUCAGAACUUUA	chr19:8530217-8530459(+)$1	242	202	227	22.9262
GGUGAACAUCCCGUCCUUCAUUGUC	chr19:54711280-54711542(+)$1	262	0	25	23.4045
CGCCCUCUCUCUGUCCUCUAGGUGU	chr19:18418206-18418414(-)$1	208	28	53	22.7264
AAAGUGUCCCUUUCCCUCCUACCUC	chr1:155217167-155217468(-)$1	301	14	39	21.7518
UUUAGAGGAUAAUGGUUCACCUCUG	chr10:70102017-70102238(+)$1	221	124	149	21.3557
UUUUAACAAAAGAAUCAAAUGUGCA	chr8:30657072-30657290(-)$1	218	29	54	23.4471
CAGUCCUCGGUGAAUCUGAGAGGAG	chr17:39847409-39847628(+)$1	219	38	63	23.3047
UCAGCGCCUAGCAAUUUUUGGUUCU	chr16:20781345-20781588(+)$1	243	58	83	24.2563
GCUGGUUCCUCACCUGCAUUAACCA	chr11:62334770-62334972(-)$1	202	15	40	23.8246
GCCCUCCUCCCACCCUACACCAGGA	chr14:24606427-24606681(+)$1	254	79	104	23.1679
UAGUGAUAAAAGGACUCUAUUCACU	chr8:37612488-37612758(+)$1	270	159	184	20.0284
UGUUUCCCGGUUAUGUGUAGGGAAC	chr17:80572858-80573128(-)$1	270	108	133	24.4116
GGGGACCAAAUAUAUUUAAUGGUUA	chr22:36677766-36678016(-)$1	250	88	113	22.4722
CUGAAUGCGAAUAUUAAAAGCUCUU	chr12:4768101-4768372(+)$1	271	197	222	22.2347
GUCAAGCAUUUAUCAUGAUACUGCU	chr3:136667234-136667504(+)$1	270	43	68	23.2646
UUAUUUCCUCUGAAUUUCUGGGCUU	chr2:62095650-62095906(-)$1	256	166	191	24.1316
UGUUACAGAAAAAUUCUUAACUGUA	chr11:10818820-10819059(-)$1	239	111	136	23.8065
CGGCCCUGGUUAGUGAAGUACGGGG	chr20:44526543-44526805(+)$1	262	115	140	23.4941
CUUCACCCUUCCUGCCCACGGUGAG	chr18:10552245-10552477(+)$1	232	35	60	23.3819
CUUUCCCUGUGAUUAUAAAAAAGGA	chr1:145441697-145441912(+)$1	215	89	114	23.6929
UGGUAAAAGUAUAAUAAUAGGCCUC	chr15:43483491-43483824(+)$1	333	22	47	20.0161
UCCCAUGCAUGUGUACUGUGGCAAG	chr16:29679259-29679515(+)$1	256	79	104	23.8585
AGGAACUCCCUCAGAUCCCAGUUCC	chr6:159187653-159187870(-)$1	217	11	36	23.3819
UGCAGGUAUUCACCACCCUUCUGCG	chr11:67379509-67379766(+)$1	257	222	247	22.6678
AAGAAGGGAUUGACAAUGGACCAUC	chr9:127639258-127639527(+)$1	269	17	42	22.9485
GAGGCGCCGUGCGCAUCAAGGUGCU	chr16:2112870-2113102(+)$1	232	113	138	23.3596
AAGCCUGUCAUCUGUGCUACUCAGG	chr15:72499367-72499593(-)$1	226	102	127	22.1219
UUAAUCUGGUAAUUUGUCACGGAUU	chr21:27096759-27097030(-)$1	271	95	120	24.0891
GCCAUCCAUGUGAUGGUUUUGGAUG	chr1:55315529-55315754(-)$1	225	67	92	21.3486
UUCCCCCUUGCUUUUUUUCCCUAGG	chr14:24607207-24607418(+)$1	211	173	198	22.0503
AUGAGAUUUUUAUGGGAAUGAUUUC	chr4:141472550-141472843(+)$1	293	131	156	23.3037
UGCUGGCCAGGAUAUUCAGAGGUAG	chr22:20099854-20100107(-)$1	253	91	116	24.1411
ugguggaggaCCGAGAUUACUACUA	chr11:129992106-129992353(+)$1	247	179	204	22.0872
CCUCUGCCUUUUGUUUUUCAGCUUC	chr6:30037763-30038035(+)$1	272	18	43	22.0657
GUUCAGCGAUUGUUUACUACGUUGA	chr1:175135663-175135922(-)$1	259	87	112	21.3180
ACUGCUUGUGUUUGGGUUGAAGCAC	chr1:26159261-26159513(+)$1	252	109	134	22.9037
UUUGUGGGAAUUGCCUUUGACCUAU	chr1:32641541-32641801(+)$1	260	225	250	23.2735
GGGCAUUAUAUUAUUCAAUUAGAGC	chr11:18424457-18424661(+)$1	204	157	182	23.7624
AGCCUUCACCUUGACUUGAAUGAAG	chr12:133302762-133303025(-)$1	263	157	182	23.4042
UCCUUAGUGUUAAAGCAUAACUAAC	chr3:138430953-138431168(-)$1	215	137	162	21.4778
GGGAAUGGCGAAGAUGUGACAUUCC	chr17:79214788-79215117(+)$1	329	130	155	23.3819
CACACGAACUGCCAAAAUAUGGUGU	chr1:93300251-93300476(+)$1	225	133	158	20.4816
UUCCCUUAAAAAGAAACACAUAAGA	chr11:59343527-59343777(-)$1	250	155	180	20.3598
UUUUAACAAAAGAAUCAAAUGUGCA	chr8:30657111-30657363(-)$1	252	102	127	23.4471
UCAUCACUAGGAUGUAUAAGGUGAC	chr2:87003814-87004051(+)$1	237	87	112	23.1163
AACACAUUAUAAGAAUUUCAGUGUG	chr22:18184910-18185151(+)$1	241	43	68	23.1795
AUGGUCAGUUUCCAUGAUAACCCUG	chr17:17152136-17152390(-)$1	254	82	107	20.6948
GGGGGCGCCCCACAACCCUGCUCCC	chr11:320660-320882(-)$1	222	164	189	22.6354
CCUGGCCAAGAGGCUCAGGGUGGCU	chr5:138264832-138265065(+)$1	233	23	48	21.4443
GGCUGUUUGAAUAAGAGAAGGACAA	chr17:40353273-40353599(-)$1	326	227	252	20.8434
GGCAGAGAGGAUCACAGAGUUCUGC	chr17:79804247-79804496(-)$1	249	140	165	23.3819
AUGUCGAGCUGACUUAAAUACUUGA	chr12:49666905-49667162(+)$1	257	211	236	23.4331
CUUGGUGCUUUUUCUUGUUUUGCAC	chr4:122737709-122737977(-)$1	268	12	37	23.2252
GUUCCUCUUUCUACUCCACUGCAGA	chr16:57187771-57188023(-)$1	252	3	28	21.6742

#DB
(((.((((.............))))	chr8:21862727-21862995(+)$1	1	196	221	22.0615
((((((((...........))))))	chr2:669654-669904(-)$1	1	201	226	24.0891
(.((((((...........))))))	chr6:34557066-34557303(-)$1	1	28	53	23.3037
(((((..(...........)..)))	chr3:44486697-44486942(-)$1	1	173	198	23.3676
((((.(((..............)))	chr17:40351479-40351744(-)$1	1	230	255	22.1339
((((((((...........))))))	chr19:8530217-8530459(+)$1	1	202	227	22.9262
((((.(((.............))).	chr19:54711280-54711542(+)$1	1	0	25	23.4045
((((((.............))).))	chr19:18418206-18418414(-)$1	1	28	53	22.7264
(.((.((.............)))).	chr1:155217167-155217468(-)$1	1	14	39	21.7518
..((((((...........))))))	chr10:70102017-70102238(+)$1	1	124	149	21.3557
((((.(((...........)))..)	chr8:30657072-30657290(-)$1	1	29	54	23.4471
(..(((((...........))))).	chr17:39847409-39847628(+)$1	1	38	63	23.3047
(((..(((...........)))...	chr16:20781345-20781588(+)$1	1	58	83	24.2563
(((((((.............)))))	chr11:62334770-62334972(-)$1	1	15	40	23.8246
)))(((((.............))))	chr14:24606427-24606681(+)$1	1	79	104	23.1679
((((((..............)))))	chr8:37612488-37612758(+)$1	1	159	184	20.0284
((((.(((...........))))))	chr17:80572858-80573128(-)$1	1	108	133	24.4116
)))(((((...........))))).	chr22:36677766-36678016(-)$1	1	88	113	22.4722
(((((.((...........))..))	chr12:4768101-4768372(+)$1	1	197	222	22.2347
((((.(((.............))))	chr3:136667234-136667504(+)$1	1	43	68	23.2646
(((..(((...........)))..)	chr2:62095650-62095906(-)$1	1	166	191	24.1316
)(((((((............)))))	chr11:10818820-10819059(-)$1	1	111	136	23.8065
.(.(((((............)))))	chr20:44526543-44526805(+)$1	1	115	140	23.4941
(((((((............))))))	chr18:10552245-10552477(+)$1	1	35	60	23.3819
(((..(((.............))))	chr1:145441697-145441912(+)$1	1	89	114	23.6929
.(((................))).)	chr15:43483491-43483824(+)$1	1	22	47	20.0161
((((.(((............))).)	chr16:29679259-29679515(+)$1	1	79	104	23.8585
(((((((............))))))	chr6:159187653-159187870(-)$1	1	11	36	23.3819
((((((.............))))))	chr11:67379509-67379766(+)$1	1	222	247	22.6678
((((.((.............)).))	chr9:127639258-127639527(+)$1	1	17	42	22.9485
..((((((...........))))))	chr16:2112870-2113102(+)$1	1	113	138	23.3596
..(((((..............))))	chr15:72499367-72499593(-)$1	1	102	127	22.1219
((((((((...........))))))	chr21:27096759-27097030(-)$1	1	95	120	24.0891
((((((((...........))))))	chr1:55315529-55315754(-)$1	1	67	92	21.3486
(((..(((..............)))	chr14:24607207-24607418(+)$1	1	173	198	22.0503
(.((((((...........))))))	chr4:141472550-141472843(+)$1	1	131	156	23.3037
.(((.(((............))).)	chr22:20099854-20100107(-)$1	1	91	116	24.1411
(.((((((...........)).)))	chr11:129992106-129992353(+)$1	1	179	204	22.0872
(....((.............))...	chr6:30037763-30038035(+)$1	1	18	43	22.0657
((((((((...........))))))	chr1:175135663-175135922(-)$1	1	87	112	21.3180
..(((((............))))).	chr1:26159261-26159513(+)$1	1	109	134	22.9037
((.(((((............)))))	chr1:32641541-32641801(+)$1	1	225	250	23.2735
((((.(((...........))).))	chr11:18424457-18424661(+)$1	1	157	182	23.7624
((((((((............)))))	chr12:133302762-133303025(-)$1	1	157	182	23.4042
)).(((((...........))))).	chr3:138430953-138431168(-)$1	1	137	162	21.4778
(((((((............))))))	chr17:79214788-79215117(+)$1	1	130	155	23.3819
(((((................))))	chr1:93300251-93300476(+)$1	1	133	158	20.4816
))).((((............)))))	chr11:59343527-59343777(-)$1	1	155	180	20.3598
((((.(((...........)))..)	chr8:30657111-30657363(-)$1	1	102	127	23.4471
((.(((((...........))))).	chr2:87003814-87004051(+)$1	1	87	112	23.1163
((((((((...........))))))	chr22:18184910-18185151(+)$1	1	43	68	23.1795
.(((((((..............)))	chr17:17152136-17152390(-)$1	1	82	107	20.6948
(((((.((...........)).)))	chr11:320660-320882(-)$1	1	164	189	22.6354
((((((((............)))))	chr5:138264832-138265065(+)$1	1	23	48	21.4443
))))((((...........))))..	chr17:40353273-40353599(-)$1	1	227	252	20.8434
(((((((............))))))	chr17:79804247-79804496(-)$1	1	140	165	23.3819
..((((((............)))))	chr12:49666905-49667162(+)$1	1	211	236	23.4331
((.(((((.............))))	chr4:122737709-122737977(-)$1	1	12	37	23.2252
(((..(((..............)))	chr16:57187771-57188023(-)$1	1	3	28	21.6742

#PSSM
e : 0.18	g : 0.15	d : 0.13	= : 0.10	b : 0.08	[ : 0.06	f : 0.06	h : 0.05	" : 0.03	! : 0.03	: : 0.01	a : 0.01	i : 0.01	E : 0.01	c : 0.01	
e : 0.15	g : 0.15	d : 0.13	= : 0.10	[ : 0.06	c : 0.06	f : 0.06	! : 0.05	h : 0.05	b : 0.03	" : 0.03	: : 0.01	a : 0.01	i : 0.01	E : 0.01	# : 0.01	
f : 0.20	e : 0.18	g : 0.13	d : 0.11	= : 0.08	c : 0.06	[ : 0.06	h : 0.05	b : 0.01	! : 0.01	i : 0.01	# : 0.01	: : 0.01	
e : 0.23	f : 0.18	g : 0.11	d : 0.10	c : 0.08	! : 0.08	= : 0.05	h : 0.05	[ : 0.01	b : 0.01	i : 0.01	# : 0.01	: : 0.01	
e : 0.20	[ : 0.18	f : 0.16	g : 0.10	d : 0.08	! : 0.08	h : 0.05	= : 0.03	c : 0.03	y : 0.01	i : 0.01	# : 0.01	
c : 0.25	e : 0.16	f : 0.15	g : 0.10	d : 0.08	b : 0.05	h : 0.05	= : 0.03	[ : 0.03	y : 0.03	! : 0.01	i : 0.01	
c : 0.23	e : 0.16	f : 0.15	b : 0.10	g : 0.10	d : 0.06	= : 0.03	v : 0.03	y : 0.03	h : 0.03	! : 0.01	w : 0.01	
c : 0.23	f : 0.15	e : 0.13	v : 0.10	u : 0.08	d : 0.06	b : 0.05	= : 0.03	w : 0.03	y : 0.03	h : 0.03	a : 0.01	g : 0.01	
t : 0.42	u : 0.23	v : 0.20	w : 0.10	y : 0.03	
t : 0.42	u : 0.23	v : 0.20	w : 0.10	y : 0.03	
t : 0.42	u : 0.23	v : 0.20	w : 0.10	y : 0.03	
t : 0.42	u : 0.23	v : 0.20	w : 0.10	y : 0.03	
t : 0.42	u : 0.23	v : 0.20	w : 0.10	y : 0.03	
t : 0.42	u : 0.23	v : 0.20	w : 0.10	y : 0.03	
t : 0.42	u : 0.23	v : 0.20	w : 0.10	y : 0.03	
t : 0.42	u : 0.23	v : 0.20	w : 0.10	y : 0.03	
t : 0.42	u : 0.23	v : 0.20	w : 0.10	y : 0.03	
t : 0.42	u : 0.23	v : 0.20	w : 0.10	y : 0.03	
t : 0.42	u : 0.23	v : 0.20	w : 0.10	y : 0.03	
v : 0.16	u : 0.15	f : 0.11	c : 0.11	w : 0.10	e : 0.08	g : 0.06	b : 0.05	= : 0.03	y : 0.03	a : 0.01	i : 0.01	h : 0.01	d : 0.01	
c : 0.16	f : 0.15	e : 0.11	v : 0.10	b : 0.10	g : 0.10	w : 0.08	h : 0.05	= : 0.03	d : 0.03	2 : 0.01	i : 0.01	y : 0.01	
c : 0.22	e : 0.18	f : 0.15	g : 0.10	w : 0.06	d : 0.05	b : 0.05	h : 0.05	= : 0.03	2 : 0.03	] : 0.03	i : 0.01	
e : 0.22	f : 0.16	c : 0.15	g : 0.10	d : 0.08	2 : 0.06	] : 0.05	h : 0.05	= : 0.03	4 : 0.03	b : 0.01	i : 0.01	
e : 0.25	f : 0.16	c : 0.11	g : 0.10	d : 0.08	2 : 0.05	h : 0.05	] : 0.05	= : 0.03	4 : 0.03	b : 0.01	i : 0.01	: : 0.01	
f : 0.18	e : 0.18	d : 0.11	g : 0.10	c : 0.08	] : 0.06	= : 0.05	h : 0.05	: : 0.05	4 : 0.03	2 : 0.01	b : 0.01	i : 0.01	B : 0.01	

#score	1340.920590709258
#seq	59
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF027CBV_QKI_transcript_m3_run2.txt

#BEAR
b[gggggggooooooggggggg]b	chr4:80940948-80941213(-)$1	265	185	209	13.4381
""gggggggoooooogggggggcc	chr10:115600416-115600694(-)$1	278	175	199	13.8697
gggg!!cccoooooocccgggggg	chr6:109696066-109696369(-)$1	303	107	131	14.0265
=========oooooo=========	chr6:155096012-155096310(+)$1	298	77	101	14.3289
::gggggggooooooggggggg::	chr14:90501121-90501491(+)$1	370	0	24	9.9135
[ccceeeeeooooooeeeee22cc	chr6:147664439-147664764(+)$1	325	89	113	11.5782
c[gggggggnnnnnggggggg]cc	chr12:27113277-27113555(+)$1	278	44	68	9.4291
iiiiii[cccnnnnnccciiiiii	chr5:56533510-56533813(+)$1	303	82	106	9.5886
""gggggggnnnnngggggggeee	chr2:26508949-26509278(+)$1	329	211	235	9.1970
iii####bboooooobb333iiii	chr1:182852724-182853072(+)$1	348	80	104	12.6174
gggggg[bboooooobb333gggg	chr8:52766358-52766657(-)$1	299	60	84	12.8909
=========oooooo=========	chr11:8991204-8991538(+)$1	334	19	43	14.3289
eeeccc[bboooooobb22ccc]e	chr2:159486021-159486288(+)$1	267	239	263	11.2009
c[cccddddoooooodddd]ccc]	chrM:848-1052(+)$1	204	135	159	12.2090
%dddd[cccoooooocccdddddd	chr2:61508280-61508550(-)$1	270	46	70	11.3018
ffff[ddddoooooodddd333ff	chr11:112223244-112223465(-)$1	221	151	175	11.9072
ffffeeeeeooooooeeeeedddd	chr5:138225194-138225497(+)$1	303	69	93	10.9717
fff####bboooooobb4444fff	chr15:55575053-55575338(-)$1	285	162	186	11.2317
bb!!eeeeeooooooeeeeebbgg	chr10:76166946-76167205(+)$1	259	19	43	11.1687
::gggggggooooooggggggg::	chr12:62969246-62969549(+)$1	303	0	24	9.9135
##==========lll=========	chr1:100537051-100537346(+)$1	295	116	140	10.1750
!!bb!!cccooooooccc22bbcc	chr1:171475966-171476269(+)$1	303	173	197	12.4703
fffff[cccooooooccc]fffff	chr8:133017093-133017407(+)$1	314	97	121	12.5692
bbgggggggooooooggggggg]b	chr8:91338431-91338740(+)$1	309	224	248	13.0485
gggg!!cccooooooccc]ggggg	chr2:189119105-189119398(-)$1	293	200	224	14.1319
:eeeeecccooooooccc]eeeee	chr4:170639826-170640162(+)$1	336	42	66	11.5536
!!ccc[cccooooooccc]ccc22	chr3:197895733-197895994(+)$1	261	18	42	13.1372
fffffddddoooooodddd]ffff	chrM:8346-8594(+)$1	248	181	205	11.3581
G:gggggggooooooggggggg:e	chr7:111018757-111019084(-)$1	327	164	188	11.2081
ddd!!ddddoooooodddd22ddd	chr7:110933816-110934142(-)$1	326	271	295	11.3282
!hhhhhhhhoooooohhhhhhhhf	chr3:152028386-152028671(+)$1	285	256	280	10.6805
ddddd[cccoooooocccdddd]d	chr22:27067422-27067680(+)$1	258	163	187	11.8270
&&gggggggooooooggggggg88	chr22:32137864-32138136(-)$1	272	198	222	11.5120
eee!!ddddoooooodddd]eeee	chrM:15721-15968(+)$1	247	20	44	11.8452
ccc[bbcccooooooccc]bb]cc	chr18:51905481-51905779(+)$1	298	229	253	12.1707
e[gggggggnnnnnggggggg]ee	chr2:61722371-61722657(-)$1	286	239	263	9.1561
[bb[ccc[aooooooaccc]bb]b	chr3:180689003-180689259(+)$1	256	171	195	11.9332
f[gggggggnnnnnggggggg]ff	chr1:16916955-16917249(-)$1	294	248	272	9.1771
ggg!!ddddoooooodddd22ggg	chr2:38535450-38535757(-)$1	307	15	39	12.4476
c"""eeeeeooooooeeeee]ccc	chr14:60723185-60723506(+)$1	321	115	139	12.0211
eeee[ddddoooooodddd22eee	chr13:50832449-50832762(+)$1	313	286	310	11.3317
===========lll==========	chr2:159349125-159349470(+)$1	345	277	301	10.3042
ggffffffaooooooa]ffffff]	chr1:38016917-38017204(-)$1	287	183	207	11.4363
!dddd[cccooooooccc]dddd3	chr1:31737463-31737753(-)$1	290	193	217	12.3489
ggggggg[aooooooaggggggg]	chr7:77208049-77208382(+)$1	333	238	262	13.5882
ddd[a[cccooooooccc]adddd	chr3:160125562-160125793(+)$1	231	50	74	12.4841
ddd"""cccooooooccc4444dd	chr10:52178299-52178604(-)$1	305	65	89	12.4299
======[bboooooobb]======	chr11:475691-475949(+)$1	258	65	89	13.2121
cc!!eeeeeooooooeeeee]ccc	chr6:158330662-158330923(+)$1	261	176	200	12.0615
$$$$$ddddooooooddddiiiii	chr10:72499044-72499321(+)$1	277	160	184	11.5830
eeeffffffooooooffffff333	chr16:75061975-75062257(+)$1	282	188	212	11.1434
=========oooooo=========	chr11:68505360-68505709(-)$1	349	313	337	14.3289
c[ccc[cccooooooccc]ccccc	chr6:147582324-147582603(+)$1	279	59	83	13.4647
[eeeee!!aooooooa22eeeeec	chrX:110975266-110975526(+)$1	260	62	86	11.4604
iiiiiiiiiooooooiiiiiiiii	chr7:131044025-131044324(+)$1	299	224	248	13.8686

#otherMatches

#Seq PSSM
AAUUUGAAAUCAUAUUUUCAAAAU	chr4:80940948-80941213(-)$1	265	185	209	13.4381
AUAAUGCAUGAAACAAUGUAUUUU	chr10:115600416-115600694(-)$1	278	175	199	13.8697
UACUAACUUGAGAGGAAGAGUAAA	chr6:109696066-109696369(-)$1	303	107	131	14.0265
UACUUAUUUCUAAUUAAGUAGGUA	chr6:155096012-155096310(+)$1	298	77	101	14.3289
uuuuaaugacaucacucauugaua	chr14:90501121-90501491(+)$1	370	0	24	9.9135
UAACUAAAGUCUUCUCUUUGUUGU	chr6:147664439-147664764(+)$1	325	89	113	11.5782
CCUUUUUGGAAAUCUUAAAAAAGC	chr12:27113277-27113555(+)$1	278	44	68	9.4291
GGAAAGACUUCAAUAGAGCUUUUC	chr5:56533510-56533813(+)$1	303	82	106	9.5886
CAAGAGAGAAACUAUCUUUCUAGA	chr2:26508949-26509278(+)$1	329	211	235	9.1970
UCUUAGAAUUACAAUAUGAUGGAA	chr1:182852724-182853072(+)$1	348	80	104	12.6174
CAAAUAcagccaauccuuacuauu	chr8:52766358-52766657(-)$1	299	60	84	12.8909
cacuacaaauacuucuuuguggug	chr11:8991204-8991538(+)$1	334	19	43	14.3289
ugcccaggcuggcgugcaguggcg	chr2:159486021-159486288(+)$1	267	239	263	11.2009
ACCUGAGUUGUAAAAAACUCCAGU	chrM:848-1052(+)$1	204	135	159	12.2090
aaagugcugggauuacaggcuugC	chr2:61508280-61508550(-)$1	270	46	70	11.3018
gaugacaugcaaauucgugaagca	chr11:112223244-112223465(-)$1	221	151	175	11.9072
GCUUAUAUAUUUUAUUGUAUUUCA	chr5:138225194-138225497(+)$1	303	69	93	10.9717
CCAAUUCUAAGUCAGUAAAUGUGG	chr15:55575053-55575338(-)$1	285	162	186	11.2317
gaccucccaaauugcugggauugc	chr10:76166946-76167205(+)$1	259	19	43	11.1687
UUGAACAGUAGGAAGAUUGUUUUG	chr12:62969246-62969549(+)$1	303	0	24	9.9135
cauuuuguuuaagauuuAGAUGAA	chr1:100537051-100537346(+)$1	295	116	140	10.1750
UUGGUUUCACUUGCUUGAUUCCCC	chr1:171475966-171476269(+)$1	303	173	197	12.4703
AGAAUAAGUAUUAUAACUAAUUCU	chr8:133017093-133017407(+)$1	314	97	121	12.5692
cuaaaaaugGCUCUACAUUUUUGA	chr8:91338431-91338740(+)$1	309	224	248	13.0485
gaagugauuguuucaaauguuuug	chr2:189119105-189119398(-)$1	293	200	224	14.1319
CCAGUUUGCUUAAGUGCACAACUG	chr4:170639826-170640162(+)$1	336	42	66	11.5536
ACCAUCGCUUCCAAUAGUAAUGUA	chr3:197895733-197895994(+)$1	261	18	42	13.1372
AUGAACGAAAAUCUGUUCGCUUCA	chrM:8346-8594(+)$1	248	181	205	11.3581
UGCAAGUCAGCUAGGUGGCUUGAA	chr7:111018757-111019084(-)$1	327	164	188	11.2081
uuuccccauucacuugugguaaag	chr7:110933816-110934142(-)$1	326	271	295	11.3282
GAUUUCAAGAUAAAGCUUGGAAUU	chr3:152028386-152028671(+)$1	285	256	280	10.6805
CUGGGAUCUUUGUGCAGACCCACG	chr22:27067422-27067680(+)$1	258	163	187	11.8270
GAUGUUUCUGUAUCUGGAAAUAAA	chr22:32137864-32138136(-)$1	272	198	222	11.5120
UCCUCAUUCUAACCUGAAUCGGAG	chrM:15721-15968(+)$1	247	20	44	11.8452
AACACUUCACCCAAAUGAUAGCGU	chr18:51905481-51905779(+)$1	298	229	253	12.1707
GAUUUUAUGUUCUCCAUAAAGCUA	chr2:61722371-61722657(-)$1	286	239	263	9.1561
GUUUACAUGGAAAUACUGUUGAGA	chr3:180689003-180689259(+)$1	256	171	195	11.9332
GAUAUGAUUCUUAAAAUCAUAACU	chr1:16916955-16917249(-)$1	294	248	272	9.1771
uacucuuuguuauuuuaaaaugua	chr2:38535450-38535757(-)$1	307	15	39	12.4476
UUUCCUAGCCUUGACGUUAGCAAC	chr14:60723185-60723506(+)$1	321	115	139	12.0211
gaccagcuccaggcugagcagggu	chr13:50832449-50832762(+)$1	313	286	310	11.3317
GGAUUAUGCUUCAUAGGCAUAGUC	chr2:159349125-159349470(+)$1	345	277	301	10.3042
uuuauauucccaccagcaauguau	chr1:38016917-38017204(-)$1	287	183	207	11.4363
CAGUCUCUCGGCCAAGAGUGAUUU	chr1:31737463-31737753(-)$1	290	193	217	12.3489
uauaucauguauccucugaugugu	chr7:77208049-77208382(+)$1	333	238	262	13.5882
gagagcagcaaggaagcuaccucu	chr3:160125562-160125793(+)$1	231	50	74	12.4841
auccaaaucugcuuugauaccagg	chr10:52178299-52178604(-)$1	305	65	89	12.4299
aaugacugcuuguuugcugucauu	chr11:475691-475949(+)$1	258	65	89	13.2121
UCAAAAGCAGAAUCAUGUUUGGAU	chr6:158330662-158330923(+)$1	261	176	200	12.0615
CCCCUGAGUUUUAGCAUUCUGGGG	chr10:72499044-72499321(+)$1	277	160	184	11.5830
agauacuaguccauucugguacuu	chr16:75061975-75062257(+)$1	282	188	212	11.1434
uuuguuuuguuuuuuugagacgga	chr11:68505360-68505709(-)$1	349	313	337	14.3289
acuuuuugauaaauuuuauaaaua	chr6:147582324-147582603(+)$1	279	59	83	13.4647
aggaaucuauucccuuucauuccu	chrX:110975266-110975526(+)$1	260	62	86	11.4604
gucaguuagaucuaguugauugau	chr7:131044025-131044324(+)$1	299	224	248	13.8686

#DB
(.(((((((......))))))).)	chr4:80940948-80941213(-)$1	1	185	209	13.4381
..(((((((......)))))))))	chr10:115600416-115600694(-)$1	1	175	199	13.8697
((((..(((......)))))))))	chr6:109696066-109696369(-)$1	1	107	131	14.0265
(((((((((......)))))))))	chr6:155096012-155096310(+)$1	1	77	101	14.3289
..(((((((......)))))))..	chr14:90501121-90501491(+)$1	1	0	24	9.9135
.((((((((......)))))..))	chr6:147664439-147664764(+)$1	1	89	113	11.5782
(.(((((((.....))))))).))	chr12:27113277-27113555(+)$1	1	44	68	9.4291
((((((.(((.....)))))))))	chr5:56533510-56533813(+)$1	1	82	106	9.5886
..(((((((.....))))))))))	chr2:26508949-26509278(+)$1	1	211	235	9.1970
(((....((......))...))))	chr1:182852724-182853072(+)$1	1	80	104	12.6174
((((((.((......))...))))	chr8:52766358-52766657(-)$1	1	60	84	12.8909
(((((((((......)))))))))	chr11:8991204-8991538(+)$1	1	19	43	14.3289
((((((.((......))..))).)	chr2:159486021-159486288(+)$1	1	239	263	11.2009
(.(((((((......)))).))).	chrM:848-1052(+)$1	1	135	159	12.2090
.((((.(((......)))))))))	chr2:61508280-61508550(-)$1	1	46	70	11.3018
((((.((((......))))...))	chr11:112223244-112223465(-)$1	1	151	175	11.9072
))))(((((......)))))((((	chr5:138225194-138225497(+)$1	1	69	93	10.9717
(((....((......))....)))	chr15:55575053-55575338(-)$1	1	162	186	11.2317
((..(((((......)))))))))	chr10:76166946-76167205(+)$1	1	19	43	11.1687
..(((((((......)))))))..	chr12:62969246-62969549(+)$1	1	0	24	9.9135
..((((((((((...)))))))))	chr1:100537051-100537346(+)$1	1	116	140	10.1750
..((..(((......)))..))))	chr1:171475966-171476269(+)$1	1	173	197	12.4703
(((((.(((......))).)))))	chr8:133017093-133017407(+)$1	1	97	121	12.5692
(((((((((......))))))).)	chr8:91338431-91338740(+)$1	1	224	248	13.0485
((((..(((......))).)))))	chr2:189119105-189119398(-)$1	1	200	224	14.1319
.((((((((......))).)))))	chr4:170639826-170640162(+)$1	1	42	66	11.5536
..(((.(((......))).)))..	chr3:197895733-197895994(+)$1	1	18	42	13.1372
(((((((((......)))).))))	chrM:8346-8594(+)$1	1	181	205	11.3581
(.(((((((......))))))).(	chr7:111018757-111019084(-)$1	1	164	188	11.2081
(((..((((......))))..)))	chr7:110933816-110934142(-)$1	1	271	295	11.3282
.((((((((......)))))))))	chr3:152028386-152028671(+)$1	1	256	280	10.6805
(((((.(((......))))))).)	chr22:27067422-27067680(+)$1	1	163	187	11.8270
..(((((((......)))))))..	chr22:32137864-32138136(-)$1	1	198	222	11.5120
(((..((((......)))).))))	chrM:15721-15968(+)$1	1	20	44	11.8452
(((.(((((......))).)).))	chr18:51905481-51905779(+)$1	1	229	253	12.1707
(.(((((((.....))))))).))	chr2:61722371-61722657(-)$1	1	239	263	9.1561
.((.(((.(......)))).)).)	chr3:180689003-180689259(+)$1	1	171	195	11.9332
(.(((((((.....))))))).))	chr1:16916955-16917249(-)$1	1	248	272	9.1771
(((..((((......))))..)))	chr2:38535450-38535757(-)$1	1	15	39	12.4476
(...(((((......))))).)))	chr14:60723185-60723506(+)$1	1	115	139	12.0211
((((.((((......))))..)))	chr13:50832449-50832762(+)$1	1	286	310	11.3317
(((((((((((...))))))))))	chr2:159349125-159349470(+)$1	1	277	301	10.3042
(((((((((......).)))))).	chr1:38016917-38017204(-)$1	1	183	207	11.4363
.((((.(((......))).)))).	chr1:31737463-31737753(-)$1	1	193	217	12.3489
(((((((.(......)))))))).	chr7:77208049-77208382(+)$1	1	238	262	13.5882
(((.(.(((......))).)))))	chr3:160125562-160125793(+)$1	1	50	74	12.4841
(((...(((......)))....))	chr10:52178299-52178604(-)$1	1	65	89	12.4299
((((((.((......)).))))))	chr11:475691-475949(+)$1	1	65	89	13.2121
((..(((((......))))).)))	chr6:158330662-158330923(+)$1	1	176	200	12.0615
.....((((......)))))))))	chr10:72499044-72499321(+)$1	1	160	184	11.5830
(((((((((......))))))...	chr16:75061975-75062257(+)$1	1	188	212	11.1434
(((((((((......)))))))))	chr11:68505360-68505709(-)$1	1	313	337	14.3289
(.(((.(((......))).)))))	chr6:147582324-147582603(+)$1	1	59	83	13.4647
.(((((..(......)..))))))	chrX:110975266-110975526(+)$1	1	62	86	11.4604
(((((((((......)))))))))	chr7:131044025-131044324(+)$1	1	224	248	13.8686

#PSSM
g : 0.10	c : 0.10	f : 0.10	= : 0.09	e : 0.09	! : 0.07	d : 0.07	b : 0.05	: : 0.05	[ : 0.05	i : 0.05	" : 0.03	% : 0.01	# : 0.01	G : 0.01	& : 0.01	$ : 0.01	
[ : 0.10	g : 0.10	e : 0.10	d : 0.10	= : 0.09	f : 0.09	" : 0.05	: : 0.05	c : 0.05	i : 0.05	b : 0.05	! : 0.03	# : 0.01	h : 0.01	& : 0.01	$ : 0.01	
g : 0.29	= : 0.10	e : 0.10	d : 0.10	f : 0.10	c : 0.09	i : 0.05	! : 0.03	b : 0.03	h : 0.01	" : 0.01	$ : 0.01	
g : 0.27	= : 0.10	f : 0.10	c : 0.09	! : 0.09	d : 0.05	e : 0.05	[ : 0.05	i : 0.03	# : 0.03	" : 0.03	b : 0.01	h : 0.01	$ : 0.01	
g : 0.23	e : 0.12	! : 0.10	= : 0.10	c : 0.09	f : 0.07	d : 0.05	i : 0.03	# : 0.03	[ : 0.03	h : 0.01	b : 0.01	a : 0.01	" : 0.01	$ : 0.01	
g : 0.23	d : 0.14	e : 0.12	[ : 0.12	= : 0.10	! : 0.05	i : 0.03	# : 0.03	c : 0.03	f : 0.03	h : 0.01	b : 0.01	" : 0.01	
c : 0.25	g : 0.21	d : 0.14	= : 0.09	e : 0.09	[ : 0.07	# : 0.03	f : 0.03	h : 0.01	! : 0.01	i : 0.01	
c : 0.25	g : 0.20	d : 0.14	= : 0.09	e : 0.09	b : 0.09	[ : 0.03	f : 0.03	h : 0.01	! : 0.01	i : 0.01	
c : 0.25	g : 0.20	d : 0.14	= : 0.09	e : 0.09	b : 0.09	a : 0.07	h : 0.01	f : 0.01	i : 0.01	
o : 0.87	n : 0.07	= : 0.03	c : 0.01	
o : 0.87	n : 0.09	= : 0.03	
o : 0.87	n : 0.09	= : 0.01	l : 0.01	
o : 0.87	n : 0.09	l : 0.03	
o : 0.87	n : 0.09	l : 0.03	
o : 0.87	g : 0.07	n : 0.01	l : 0.01	= : 0.01	
c : 0.25	g : 0.20	d : 0.14	= : 0.09	e : 0.09	b : 0.09	a : 0.07	h : 0.01	f : 0.01	i : 0.01	
c : 0.27	g : 0.21	d : 0.14	= : 0.09	e : 0.09	b : 0.09	h : 0.01	] : 0.01	f : 0.01	2 : 0.01	i : 0.01	
c : 0.27	g : 0.21	d : 0.14	= : 0.09	e : 0.09	3 : 0.03	2 : 0.03	f : 0.03	4 : 0.01	h : 0.01	] : 0.01	i : 0.01	
g : 0.23	d : 0.18	] : 0.14	= : 0.10	e : 0.10	i : 0.03	3 : 0.03	2 : 0.03	4 : 0.03	f : 0.03	h : 0.01	c : 0.01	
g : 0.25	e : 0.12	= : 0.10	] : 0.07	2 : 0.07	i : 0.05	3 : 0.05	c : 0.05	d : 0.05	f : 0.05	4 : 0.03	h : 0.01	b : 0.01	a : 0.01	
g : 0.27	= : 0.10	d : 0.09	2 : 0.07	i : 0.07	c : 0.07	b : 0.07	f : 0.07	e : 0.05	4 : 0.03	] : 0.03	3 : 0.01	h : 0.01	
g : 0.21	= : 0.10	c : 0.10	d : 0.10	e : 0.09	] : 0.07	i : 0.07	f : 0.07	b : 0.05	3 : 0.03	2 : 0.01	h : 0.01	4 : 0.01	
c : 0.16	g : 0.10	= : 0.10	e : 0.10	d : 0.10	f : 0.10	] : 0.09	i : 0.07	: : 0.05	2 : 0.01	h : 0.01	8 : 0.01	3 : 0.01	
c : 0.16	e : 0.12	= : 0.10	d : 0.10	f : 0.10	g : 0.09	i : 0.07	b : 0.05	] : 0.05	: : 0.03	3 : 0.03	2 : 0.01	8 : 0.01	

#score	653.9109444780894
#seq	55
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_UTR_m2_run1.txt

#BEAR
bb[dddduuuuuuuuuuuudddd]	chr18:12986719-12987043(+)$1	324	119	143	19.4042
ggggggvvvvvvvvvvvvvggggg	chr6:31657350-31657595(-)$1	245	154	178	21.0838
a!!eeeeeuuuuuuuuuuuueeee	chr18:2728347-2728591(+)$1	244	63	87	20.5528
ffffffvvvvvvvvvvvvvfffff	chr2:209176821-209177096(+)$1	275	50	74	20.6606
deeeeeuuuuuuuuuuuueeeee]	chr1:29486895-29487144(-)$1	249	3	27	20.4614
:eeeeevvvvvvvvvvvvveeeee	chr16:3777317-3777606(-)$1	289	54	78	20.2629
fff"""ccctttttttttttccc3	chr15:68434183-68434432(+)$1	249	19	43	17.5669
iiiiiiivvvvvvvvvvvvviiii	chrX:106366643-106366895(-)$1	252	80	104	20.5841
[eeeee[atttttttttttaeeee	chr14:103801866-103802090(+)$1	224	63	87	19.5469
gggggg^^^^^^^^^^^^^^^^^^	chr4:169923204-169923466(-)$1	262	77	101	18.3956
gggggg^^^^^^^^^^^^^^^^^^	chr17:57915496-57915835(+)$1	339	83	107	18.3956
ggggggtttttttttttggggggg	chr17:25634655-25634887(+)$1	232	20	44	17.3095
ccc[bbuuuuuuuuuuuubb22cc	chr13:96638556-96638805(-)$1	249	132	156	19.0161
cc!!eeeeettttttttttteeee	chr7:12410293-12410601(-)$1	308	182	206	17.6677
d!!bb[ccctttttttttttcccb	chr2:201719670-201719923(-)$1	253	173	197	16.8467
b!!cccuuuuuuuuuuuuccc22b	chr4:139104303-139104563(-)$1	260	155	179	19.5989
:eeeeewwwwwwwwwwwwwweeee	chr20:34329923-34330139(-)$1	216	80	104	20.9935
eeeeexxxxxxxxxxxxxxxeeee	chr11:9304994-9305248(-)$1	254	215	239	18.6075
#eeeee^^^^^^^^^^^^^^^^^^	chr21:34931186-34931442(+)$1	256	68	92	18.2023
======^^^^^^^^^^^^^^^^^^	chr4:77996923-77997143(-)$1	220	40	64	18.3352
eeeeeexxxxxxxxxxxxxxxeee	chr3:156874735-156874993(-)$1	258	4	28	18.9654
ffffff^^^^^^^^^^^^^^^^^^	chr12:112443323-112443622(-)$1	299	26	50	18.0840
cc[eeeeettttttttttteeeee	chr18:9104055-9104269(+)$1	214	175	199	18.6514
eeee^^^^^^^^^^^^^^^^^^^^	chr12:21661180-21661463(+)$1	283	86	110	17.7845
d[bb!!bbuuuuuuuuuuuubb22	chr1:153719637-153719919(+)$1	282	104	128	18.3653
ffffffuuuuuuuuuuuuffffff	chr7:140434429-140434674(-)$1	245	135	159	19.9626
"bb[ddddtttttttttttdddd]	chr19:10284450-10284706(-)$1	256	104	128	16.8452
fffff[bbtttttttttttbb]ff	chr10:69832800-69833057(-)$1	257	54	78	17.7953
ffffffuuuuuuuuuuuuffffff	chr12:6603171-6603431(+)$1	260	215	239	19.9626
"""cccyyyyyyyyyyyyyyyycc	chr3:43743598-43743838(+)$1	240	114	138	21.3502
gggggg^^^^^^^^^^^^^^^^^^	chr7:50793588-50793841(-)$1	253	73	97	18.3956
!eeeeeyyyyyyyyyyyyyyyyee	chr9:134067483-134067736(+)$1	253	171	195	21.9045
ggggggtttttttttttggggggg	chr6:99848076-99848297(-)$1	221	10	34	17.3095
ffffff^^^^^^^^^^^^^^^^^^	chr9:95033802-95034065(-)$1	263	101	125	18.0840
ffffffxxxxxxxxxxxxxxxfff	chr11:95560841-95561097(+)$1	256	61	85	18.6742
cc[cccccctttttttttttccc]	chr11:33307849-33308101(+)$1	252	150	174	17.8744
eeeeexxxxxxxxxxxxxxxeeee	chr19:15348246-15348492(-)$1	246	123	147	18.6075
ffffffwwwwwwwwwwwwwwffff	chr12:57909768-57910046(+)$1	278	20	44	21.4713
ggggggwwwwwwwwwwwwwwgggg	chr7:26230678-26230944(-)$1	266	42	66	21.9194
hhhhhhhvvvvvvvvvvvvvhhhh	chr21:34821044-34821305(-)$1	261	32	56	18.0936
ggggggwwwwwwwwwwwwwwgggg	chr5:150121569-150121822(-)$1	253	69	93	21.9194
ffffffvvvvvvvvvvvvvfffff	chr6:79911316-79911555(-)$1	239	60	84	20.6606
f!!ccc^^^^^^^^^^^^^^^^^^	chr1:155884167-155884445(-)$1	278	51	75	18.1650
iii[bb^^^^^^^^^^^^^^^^^^	chr7:148516021-148516267(-)$1	246	195	219	17.6834
FFFeeeeettttttttttteeeee	chr11:63525504-63525762(+)$1	258	30	54	17.5088
ggg!!cccuuuuuuuuuuuuccc2	chr6:36507832-36508092(-)$1	260	214	238	20.4640
ggggggtttttttttttggggggg	chr17:26910533-26910777(-)$1	244	61	85	17.3095
f!!ccc^^^^^^^^^^^^^^^^^^	chr18:2729170-2729421(+)$1	251	183	207	18.1650
eeee^^^^^^^^^^^^^^^^^^^e	chr5:167922248-167922508(+)$1	260	46	70	17.7579
eeeeyyyyyyyyyyyyyyyyeeee	chr11:62574952-62575223(-)$1	271	160	184	21.0299
cc[cccwwwwwwwwwwwwwwccc]	chr17:4579947-4580220(-)$1	273	120	144	21.7612
fffffyyyyyyyyyyyyyyyyfff	chr8:8861472-8861727(+)$1	255	211	235	21.3333
:eeeeewwwwwwwwwwwwwweeee	chr20:34329904-34330123(-)$1	219	64	88	20.9935
======^^^^^^^^^^^^^^^^^^	chr12:123001866-123002079(-)$1	213	46	70	18.3352
iiiiiiitttttttttttiiiiii	chr2:220096507-220096788(+)$1	281	128	152	17.6730
#fffffftttttttttttffffff	chr11:47843214-47843492(-)$1	278	146	170	17.7658
ggggggvvvvvvvvvvvvvggggg	chr7:148515067-148515323(-)$1	256	224	248	21.0838
cc[dddduuuuuuuuuuuudddd]	chr18:23658972-23659235(-)$1	263	7	31	19.8949
fff[cccuuuuuuuuuuuuccc]f	chr5:179044507-179044759(-)$1	252	39	63	20.9433
ffffffxxxxxxxxxxxxxxxfff	chr16:23505560-23505840(-)$1	280	137	161	18.6742
&eeeeewwwwwwwwwwwwwweeee	chr11:33182761-33183007(-)$1	246	49	73	21.3367
d[ddddxxxxxxxxxxxxxxxddd	chr17:29551999-29552289(+)$1	290	176	200	17.5951
eeee^^^^^^^^^^^^^^^^^^^^	chr12:53567422-53567696(-)$1	274	66	90	17.7845
!eeeeexxxxxxxxxxxxxxxeee	chr22:19438112-19438379(-)$1	267	201	225	19.0997
iiiiiiitttttttttttiiiiii	chr18:2750236-2750483(+)$1	247	91	115	17.6730
!!eeeeevvvvvvvvvvvvveeee	chr14:35786328-35786614(+)$1	286	37	61	21.2253
==[cccwwwwwwwwwwwwwwccc=	chr3:183705344-183705641(-)$1	297	242	266	21.8918

#otherMatches

#Seq PSSM
guuccugucuucauuguuuCAGGU	chr18:12986719-12987043(+)$1	324	119	143	19.4042
UGGUGGUCCAGUUUGCCAUCCACC	chr6:31657350-31657595(-)$1	245	154	178	21.0838
CUUUGAAACCUGAAUAUGUAUUUC	chr18:2728347-2728591(+)$1	244	63	87	20.5528
GGCGUAUUCUCUAUAUAAUUAUGC	chr2:209176821-209177096(+)$1	275	50	74	20.6606
UGCAAAAUCCACCUAACCUUUGCU	chr1:29486895-29487144(-)$1	249	3	27	20.4614
AACCAGUUGAUUUAAAUAUCUGGU	chr16:3777317-3777606(-)$1	289	54	78	20.2629
ACAUGUGUGUUUUUUUUUUUUGCU	chr15:68434183-68434432(+)$1	249	19	43	17.5669
uuguuuguuuuguuuuguuuuAAA	chrX:106366643-106366895(-)$1	252	80	104	20.5841
AUCCAGCGAUGAUGUUAAACCUGG	chr14:103801866-103802090(+)$1	224	63	87	19.5469
Cuuuuuuuuuuuuuuuuuuuuuuu	chr4:169923204-169923466(-)$1	262	77	101	18.3956
ACAUUUUCUUUAACGUUUUUCCUG	chr17:57915496-57915835(+)$1	339	83	107	18.3956
UUCUUUACAAAUCAUAAGAAGAAC	chr17:25634655-25634887(+)$1	232	20	44	17.3095
AGCAGCUUCUCAAAUAAUGUCCGC	chr13:96638556-96638805(-)$1	249	132	156	19.0161
CCCUAGUGUAGAUUACAGAAACAC	chr7:12410293-12410601(-)$1	308	182	206	17.6677
UAUCUUGGGUUUACCGUAUUUCCA	chr2:201719670-201719923(-)$1	253	173	197	16.8467
GUUGCCCUCUCCUGCUUUGGCUCC	chr4:139104303-139104563(-)$1	260	155	179	19.5989
CUCUAAUUCCAUUGUUUUUUUUAG	chr20:34329923-34330139(-)$1	216	80	104	20.9935
UUGGCUGUUCUUUCUAUUCUGCCA	chr11:9304994-9305248(-)$1	254	215	239	18.6075
augucuucuacuuuuuuuuuuuuu	chr21:34931186-34931442(+)$1	256	68	92	18.2023
CCUCUGUCUCGCUUUUUCUUAUUU	chr4:77996923-77997143(-)$1	220	40	64	18.3352
CCUUUUUUUAAAGCAGGAUGUAAA	chr3:156874735-156874993(-)$1	258	4	28	18.9654
CUAGUAUUUGUCUCUUCUGUUACC	chr12:112443323-112443622(-)$1	299	26	50	18.0840
GUGUUCCCaaaugaaauaagggag	chr18:9104055-9104269(+)$1	214	175	199	18.6514
UGCAUUGUGUUUAAUUACCUUUUC	chr12:21661180-21661463(+)$1	283	86	110	17.7845
CUCUUUCCUUUAGUUGGUGUGGUU	chr1:153719637-153719919(+)$1	282	104	128	18.3653
CAUUGCCAAAAAUUCACCGCAGUG	chr7:140434429-140434674(-)$1	245	135	159	19.9626
UUCUUCCUUCCCUCCACACAGGAU	chr19:10284450-10284706(-)$1	256	104	128	16.8452
AAGAGCAAUUAUACAUCCUUUUUU	chr10:69832800-69833057(-)$1	257	54	78	17.7953
UUGGGCAAAAUACAAUAGGCCUAG	chr12:6603171-6603431(+)$1	260	215	239	19.9626
CUUGCACAUACAAAAAAGAACCUG	chr3:43743598-43743838(+)$1	240	114	138	21.3502
UCUGGAUGUGUuauuuuuucuauu	chr7:50793588-50793841(-)$1	253	73	97	18.3956
AGCCUUUCUCAUUUUCUCCAUCAG	chr9:134067483-134067736(+)$1	253	171	195	21.9045
AUGUUAGAAAUCCuauauaauauu	chr6:99848076-99848297(-)$1	221	10	34	17.3095
UCUUCCCUCUCUUUUGCCUUUUCU	chr9:95033802-95034065(-)$1	263	101	125	18.0840
AGAGAAUAUAACUUCAAUUACUUC	chr11:95560841-95561097(+)$1	256	61	85	18.6742
CAAACUCAGUCAAGUGCCUUUUGU	chr11:33307849-33308101(+)$1	252	150	174	17.8744
GCACUGCUUAUCUCCGAAAUGGUG	chr19:15348246-15348492(-)$1	246	123	147	18.6075
GGCUGUGCCCUCGCUCCACAACAG	chr12:57909768-57910046(+)$1	278	20	44	21.4713
AGAAUAAUUUUUAUAAACCCUGUU	chr7:26230678-26230944(-)$1	266	42	66	21.9194
GAAAUGGUGGCUGUUUUUUUCUAU	chr21:34821044-34821305(-)$1	261	32	56	18.0936
UGAAAGUCUUGUUUAAUAUUCUUU	chr5:150121569-150121822(-)$1	253	69	93	21.9194
UAUAGUAGUUUCAGUAGUAACUAU	chr6:79911316-79911555(-)$1	239	60	84	20.6606
ACUCACUUGCUAACuuuccuuuuu	chr1:155884167-155884445(-)$1	278	51	75	18.1650
AAGGUAUCCUAUUUUUAAGCAAUU	chr7:148516021-148516267(-)$1	246	195	219	17.6834
AGGACUGUCCUCUAGCAUCACAGU	chr11:63525504-63525762(+)$1	258	30	54	17.5088
UAUCGCUCAACAUGAAGAACGAGA	chr6:36507832-36508092(-)$1	260	214	238	20.4640
CAGAGAAGGUAAUUUGGUCUUUGG	chr17:26910533-26910777(-)$1	244	61	85	17.3095
CAAGUUCAGAAUAUUAAAAAAGAC	chr18:2729170-2729421(+)$1	251	183	207	18.1650
GCCUUUCUCUUUUUGUCUACCCCA	chr5:167922248-167922508(+)$1	260	46	70	17.7579
GAGGCCGCCCAUUCAGAGAUCCUC	chr11:62574952-62575223(-)$1	271	160	184	21.0299
UGGCCUCAUUUUUUCUGUCUAGGG	chr17:4579947-4580220(-)$1	273	120	144	21.7612
CAAUUAUCUUUCUCCUUCUAAGGU	chr8:8861472-8861727(+)$1	255	211	235	21.3333
CUCUAAUUCCAUUGUUUUUUUUAG	chr20:34329904-34330123(-)$1	219	64	88	20.9935
AUAAAUGAAACAACACAACUUUUA	chr12:123001866-123002079(-)$1	213	46	70	18.3352
CUUCCCUUAUUUAGGCUCAGGGGA	chr2:220096507-220096788(+)$1	281	128	152	17.6730
UCCACGGAUAUCUGGGCCCUGUGG	chr11:47843214-47843492(-)$1	278	146	170	17.7658
CAGCACCCCCACCAUUAAUGUGCU	chr7:148515067-148515323(-)$1	256	224	248	21.0838
GUAAGAUUACAAUAAGCAUGUUUA	chr18:23658972-23659235(-)$1	263	7	31	19.8949
UUAGAAAUUUUAGGUUUUUUUUGU	chr5:179044507-179044759(-)$1	252	39	63	20.9433
GUAGCCCCACACAUGCGCCCUGGC	chr16:23505560-23505840(-)$1	280	137	161	18.6742
UACUGAUUUGGGGGUGGUUUUUAG	chr11:33182761-33183007(-)$1	246	49	73	21.3367
AGUGGAAAUACCAGUCAAAUGUCC	chr17:29551999-29552289(+)$1	290	176	200	17.5951
ugaauuuaugaaaaaaacacuuaa	chr12:53567422-53567696(-)$1	274	66	90	17.7845
CUGAUUGGAAAAUAAUAAAAGAAU	chr22:19438112-19438379(-)$1	267	201	225	19.0997
CUCCUCUUUUGUUUUGUUAGGGGA	chr18:2750236-2750483(+)$1	247	91	115	17.6730
uaugggaguuuauuauacuauccc	chr14:35786328-35786614(+)$1	286	37	61	21.2253
CAGCUGGAAGGAUGAAAGGGCAGU	chr3:183705344-183705641(-)$1	297	242	266	21.8918

#DB
((.((((............)))).	chr18:12986719-12987043(+)$1	1	119	143	19.4042
((((((.............)))))	chr6:31657350-31657595(-)$1	1	154	178	21.0838
(..(((((............))))	chr18:2728347-2728591(+)$1	1	63	87	20.5528
((((((.............)))))	chr2:209176821-209177096(+)$1	1	50	74	20.6606
((((((............))))).	chr1:29486895-29487144(-)$1	1	3	27	20.4614
.(((((.............)))))	chr16:3777317-3777606(-)$1	1	54	78	20.2629
(((...(((...........))).	chr15:68434183-68434432(+)$1	1	19	43	17.5669
(((((((.............))))	chrX:106366643-106366895(-)$1	1	80	104	20.5841
.(((((.(...........)))))	chr14:103801866-103802090(+)$1	1	63	87	19.5469
((((((..................	chr4:169923204-169923466(-)$1	1	77	101	18.3956
((((((..................	chr17:57915496-57915835(+)$1	1	83	107	18.3956
((((((...........)))))))	chr17:25634655-25634887(+)$1	1	20	44	17.3095
(((.((............))..))	chr13:96638556-96638805(-)$1	1	132	156	19.0161
((..(((((...........))))	chr7:12410293-12410601(-)$1	1	182	206	17.6677
(..((.(((...........))))	chr2:201719670-201719923(-)$1	1	173	197	16.8467
(..(((............)))..)	chr4:139104303-139104563(-)$1	1	155	179	19.5989
.(((((..............))))	chr20:34329923-34330139(-)$1	1	80	104	20.9935
(((((...............))))	chr11:9304994-9305248(-)$1	1	215	239	18.6075
.(((((..................	chr21:34931186-34931442(+)$1	1	68	92	18.2023
((((((..................	chr4:77996923-77997143(-)$1	1	40	64	18.3352
((((((...............)))	chr3:156874735-156874993(-)$1	1	4	28	18.9654
((((((..................	chr12:112443323-112443622(-)$1	1	26	50	18.0840
((.(((((...........)))))	chr18:9104055-9104269(+)$1	1	175	199	18.6514
((((....................	chr12:21661180-21661463(+)$1	1	86	110	17.7845
(.((..((............))..	chr1:153719637-153719919(+)$1	1	104	128	18.3653
((((((............))))))	chr7:140434429-140434674(-)$1	1	135	159	19.9626
.((.((((...........)))).	chr19:10284450-10284706(-)$1	1	104	128	16.8452
(((((.((...........)).))	chr10:69832800-69833057(-)$1	1	54	78	17.7953
((((((............))))))	chr12:6603171-6603431(+)$1	1	215	239	19.9626
...(((................))	chr3:43743598-43743838(+)$1	1	114	138	21.3502
((((((..................	chr7:50793588-50793841(-)$1	1	73	97	18.3956
.(((((................))	chr9:134067483-134067736(+)$1	1	171	195	21.9045
((((((...........)))))))	chr6:99848076-99848297(-)$1	1	10	34	17.3095
((((((..................	chr9:95033802-95034065(-)$1	1	101	125	18.0840
((((((...............)))	chr11:95560841-95561097(+)$1	1	61	85	18.6742
((.((((((...........))).	chr11:33307849-33308101(+)$1	1	150	174	17.8744
(((((...............))))	chr19:15348246-15348492(-)$1	1	123	147	18.6075
((((((..............))))	chr12:57909768-57910046(+)$1	1	20	44	21.4713
((((((..............))))	chr7:26230678-26230944(-)$1	1	42	66	21.9194
(((((((.............))))	chr21:34821044-34821305(-)$1	1	32	56	18.0936
((((((..............))))	chr5:150121569-150121822(-)$1	1	69	93	21.9194
((((((.............)))))	chr6:79911316-79911555(-)$1	1	60	84	20.6606
(..(((..................	chr1:155884167-155884445(-)$1	1	51	75	18.1650
(((.((..................	chr7:148516021-148516267(-)$1	1	195	219	17.6834
((((((((...........)))))	chr11:63525504-63525762(+)$1	1	30	54	17.5088
(((..(((............))).	chr6:36507832-36508092(-)$1	1	214	238	20.4640
((((((...........)))))))	chr17:26910533-26910777(-)$1	1	61	85	17.3095
(..(((..................	chr18:2729170-2729421(+)$1	1	183	207	18.1650
((((...................)	chr5:167922248-167922508(+)$1	1	46	70	17.7579
((((................))))	chr11:62574952-62575223(-)$1	1	160	184	21.0299
((.(((..............))).	chr17:4579947-4580220(-)$1	1	120	144	21.7612
(((((................)))	chr8:8861472-8861727(+)$1	1	211	235	21.3333
.(((((..............))))	chr20:34329904-34330123(-)$1	1	64	88	20.9935
((((((..................	chr12:123001866-123002079(-)$1	1	46	70	18.3352
(((((((...........))))))	chr2:220096507-220096788(+)$1	1	128	152	17.6730
.((((((...........))))))	chr11:47843214-47843492(-)$1	1	146	170	17.7658
((((((.............)))))	chr7:148515067-148515323(-)$1	1	224	248	21.0838
((.((((............)))).	chr18:23658972-23659235(-)$1	1	7	31	19.8949
(((.(((............))).)	chr5:179044507-179044759(-)$1	1	39	63	20.9433
((((((...............)))	chr16:23505560-23505840(-)$1	1	137	161	18.6742
.(((((..............))))	chr11:33182761-33183007(-)$1	1	49	73	21.3367
(.((((...............)))	chr17:29551999-29552289(+)$1	1	176	200	17.5951
((((....................	chr12:53567422-53567696(-)$1	1	66	90	17.7845
.(((((...............)))	chr22:19438112-19438379(-)$1	1	201	225	19.0997
(((((((...........))))))	chr18:2750236-2750483(+)$1	1	91	115	17.6730
..(((((.............))))	chr14:35786328-35786614(+)$1	1	37	61	21.2253
((.(((..............))))	chr3:183705344-183705641(-)$1	1	242	266	21.8918

#PSSM
f : 0.22	g : 0.16	e : 0.10	c : 0.08	d : 0.05	i : 0.05	: : 0.04	= : 0.04	! : 0.04	b : 0.02	# : 0.02	" : 0.02	a : 0.01	[ : 0.01	h : 0.01	F : 0.01	& : 0.01	
e : 0.23	f : 0.20	g : 0.16	! : 0.08	c : 0.08	i : 0.05	= : 0.04	b : 0.02	[ : 0.02	" : 0.01	h : 0.01	F : 0.01	
e : 0.25	f : 0.20	g : 0.16	[ : 0.08	! : 0.08	i : 0.05	= : 0.02	b : 0.02	c : 0.01	" : 0.01	h : 0.01	F : 0.01	d : 0.01	
e : 0.29	f : 0.17	g : 0.14	c : 0.10	[ : 0.05	d : 0.04	i : 0.04	! : 0.02	b : 0.02	= : 0.02	" : 0.01	h : 0.01	
e : 0.25	f : 0.17	g : 0.14	c : 0.11	d : 0.05	i : 0.04	b : 0.04	^ : 0.04	= : 0.02	! : 0.02	" : 0.01	h : 0.01	y : 0.01	
e : 0.22	g : 0.14	f : 0.14	c : 0.13	d : 0.05	i : 0.04	^ : 0.04	b : 0.02	[ : 0.02	x : 0.02	= : 0.02	y : 0.02	" : 0.01	! : 0.01	h : 0.01	
^ : 0.20	w : 0.11	x : 0.10	v : 0.07	e : 0.07	u : 0.07	c : 0.07	y : 0.05	d : 0.04	i : 0.04	t : 0.04	b : 0.02	[ : 0.01	h : 0.01	f : 0.01	
^ : 0.20	u : 0.11	v : 0.11	w : 0.11	x : 0.10	t : 0.08	e : 0.05	c : 0.05	y : 0.05	b : 0.02	a : 0.01	d : 0.01	
^ : 0.20	u : 0.16	t : 0.16	v : 0.11	w : 0.11	x : 0.10	y : 0.05	c : 0.04	e : 0.01	
t : 0.22	^ : 0.20	u : 0.16	v : 0.11	w : 0.11	x : 0.10	y : 0.05	
t : 0.22	^ : 0.20	u : 0.16	v : 0.11	w : 0.11	x : 0.10	y : 0.05	
t : 0.22	^ : 0.20	u : 0.16	v : 0.11	w : 0.11	x : 0.10	y : 0.05	
t : 0.22	^ : 0.20	u : 0.16	v : 0.11	w : 0.11	x : 0.10	y : 0.05	
t : 0.22	^ : 0.20	u : 0.16	v : 0.11	w : 0.11	x : 0.10	y : 0.05	
t : 0.22	^ : 0.20	u : 0.16	v : 0.11	w : 0.11	x : 0.10	y : 0.05	
t : 0.22	^ : 0.20	u : 0.16	v : 0.11	w : 0.11	x : 0.10	y : 0.05	
t : 0.22	^ : 0.20	u : 0.16	v : 0.11	w : 0.11	x : 0.10	y : 0.05	
^ : 0.20	t : 0.17	u : 0.16	v : 0.11	w : 0.11	x : 0.10	y : 0.05	g : 0.04	
^ : 0.20	t : 0.13	v : 0.11	w : 0.11	x : 0.10	u : 0.08	y : 0.05	g : 0.04	f : 0.04	i : 0.02	e : 0.01	b : 0.01	c : 0.01	
^ : 0.20	w : 0.11	x : 0.10	g : 0.07	f : 0.07	e : 0.05	t : 0.05	y : 0.05	d : 0.04	u : 0.04	v : 0.04	b : 0.02	c : 0.02	i : 0.02	a : 0.01	
e : 0.20	^ : 0.20	c : 0.11	g : 0.10	f : 0.08	x : 0.07	d : 0.04	i : 0.04	y : 0.04	b : 0.02	2 : 0.01	h : 0.01	
e : 0.23	^ : 0.20	f : 0.13	g : 0.10	c : 0.10	d : 0.05	i : 0.04	2 : 0.02	y : 0.02	b : 0.01	] : 0.01	h : 0.01	
e : 0.25	^ : 0.20	f : 0.14	c : 0.11	g : 0.10	d : 0.05	i : 0.04	2 : 0.02	h : 0.01	] : 0.01	
e : 0.25	^ : 0.19	f : 0.16	g : 0.10	] : 0.08	i : 0.04	c : 0.02	b : 0.02	2 : 0.02	3 : 0.01	h : 0.01	d : 0.01	= : 0.01	

#score	1289.323442022891
#seq	67
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_CDS_m3_run1.txt

#BEAR
ggggggg"""ccc[cccmmmmccc22ccc]ggggggg]	chr19:1621964-1622245(-)$1	281	108	146	15.3494
dd"""ccc!!gggggggmmmmggggggg4444ccc555	chr3:36897858-36898137(-)$1	279	183	221	11.8192
eecccffffff"""ccclllccc333ffffff22ccc]	chr9:134334525-134334803(+)$1	278	198	236	11.3361
[a!!bbaccc####cccnnnnnccc22ccc]a]bb22a	chr1:16053716-16054021(+)$1	305	19	57	11.7205
dagggggggbb[eeeeemmmmeeeeebb333ggggggg	chr1:19452912-19453137(-)$1	225	8	46	12.2454
=========!!ddddccclllccc22dddd]=======	chr4:1729717-1729981(+)$1	264	204	242	13.2678
eeeee####ccc!!cccmmmmccc]ccc333eeeeeff	chr17:38560945-38561186(-)$1	241	104	142	15.3862
dddddddd[ccc!!cccmmmmccc22ccc22dddd]dd	chr1:16258648-16258907(+)$1	259	31	69	14.5924
:eeeee####gggggggmmmmggggggg4444eeeeed	chr17:1562616-1562866(-)$1	250	46	84	12.4829
ddddd[bb[ccc[ddddmmmmddddccc]bbddddeee	chr1:19536511-19536774(-)$1	263	111	149	13.0406
d[a!!eeeee"""ddddmmmmdddd]eeeee22a]ddd	chrX:47062308-47062519(+)$1	211	51	89	13.6340
e####eeeee####ccclllccceeeee333eeeee44	chr9:286426-286671(+)$1	245	94	132	12.8476
!!dddd"""ccc[addddmmmmdddd]a]ccc333ddd	chr5:37370898-37371145(-)$1	247	173	211	13.2769
####bb####ccc!!bbmmmmbb]ccc333bb22a22a	chr2:54853120-54853426(+)$1	306	247	285	13.7966
!!a[a[a"""bb!!cccmmmmccc22bb333a]aa22e	chr12:6696596-6696823(-)$1	227	71	109	16.9197
[ddddbb!!cccccc[ammmma]ccc]ccc333bb]dd	chrX:153596000-153596205(-)$1	205	139	177	13.4166
$bb"""bb!!bb[ddddmmmmdddd]bb22bbbbgggg	chr14:102476213-102476472(+)$1	259	135	173	12.3743
iiiiiiii####ddddmmmmdddd]iiiiiiiiia22b	chr16:27475924-27476237(-)$1	313	213	251	12.4831
ffffffdddd"""ddddmmmmdddd333ddddeeeeeq	chr2:216973981-216974266(+)$1	285	222	260	12.1853
iiii[bb"""ccc[ddddoooooodddd333ccc333b	chr6:31762676-31762925(-)$1	249	13	51	11.8179
===[a[dddd!!bbcccmmmmccc]bbdddda]=====	chrX:153219927-153220185(-)$1	258	122	160	13.4048
[a[dddd!!ccc[ddddllldddd333cccdddda]cc	chr5:149748994-149749238(+)$1	244	47	85	13.2525
dddddddd[a!!ddddmmmmdddd]adddd]dddd]cc	chr11:61081238-61081473(-)$1	235	112	150	11.4332
!!ccc[gggggggddddmmmmdddd]ggggggg]ccc]	chr1:202711427-202711731(-)$1	304	83	121	13.8001
ddd[eeeee[cccddddmmmmdddd]ccc]eeeee333	chr17:80041894-80042128(-)$1	234	82	120	13.7862
f$$$$$bb[bb!!ddddmmmmdddd22bb]bb333fff	chr11:62300342-62300617(-)$1	275	79	117	12.4869
##ccc[bb####eeeeemmmmeeeee333bbcccffff	chr12:120582347-120582577(-)$1	230	135	173	12.5210
iiiiii[cccbb[ddddmmmmdddd]bb]ccciiiiii	chr12:120611847-120612073(-)$1	226	104	142	13.6501
ff!!eeeeedddd[ccclllccc]dddd4444eeeeef	chr17:38562613-38562845(-)$1	232	58	96	11.0925
b"""dddd[bb[eeeeemmmmeeeeebb]dddd4444b	chr19:49377460-49377724(+)$1	264	26	64	11.9155
a[eeeee!!dddd[cccmmmmcccdddd]eeeee]abb	chr3:184041199-184041444(+)$1	245	170	208	12.8111
!eeeee!!dddd"""bbmmmmbb4444dddd22eeeee	chrX:53574615-53574886(-)$1	271	225	263	12.5634
ee!!dddd!!ccc[cccnnnnnccccccdddd]eeeee	chr1:201952103-201952343(+)$1	240	199	237	11.2037
!ffffff####ffffffmmmmffffff333ffffff22	chr1:202710441-202710721(-)$1	280	81	119	11.3169
###a[bb[dddd[ddddmmmmdddd]ddddbb]a333d	chr1:109793608-109793900(+)$1	292	195	233	13.9482
!dddd$$$$$ccc!!bbmmmmbb333cccdddd4444d	chr18:657593-657863(+)$1	270	53	91	13.5309
fff!!bb!!ccc[cccbbmmmmbb]ccc]ccc22bb33	chr16:24196680-24196914(+)$1	234	166	204	11.5234
ffiiiiiiiii"""ddddllldddd4444iiiiiiiii	chr17:73839154-73839429(-)$1	275	69	107	12.9092
ggggggeeeee"""cccmmmmccc333eeeee]ggggg	chr8:48872437-48872664(-)$1	227	58	96	14.7232
ddddccc[dddd!!cccmmmmccc22dddd]ccc22dd	chr17:78337356-78337595(+)$1	239	102	140	14.0346
!dddd[bb[eeeeecccmmmmccc]eeeee]bb]dddd	chrX:47074113-47074347(+)$1	234	113	151	12.7438
[ccc####dddd!!cccmmmmccc22ddddcccccc]e	chr17:78292889-78293112(+)$1	223	128	166	14.6431
bccc[ggggggg!!cccnnnnnccc333ggggggg]cc	chr1:55680472-55680829(-)$1	357	286	324	11.6323
h"""bb!!bb####cccmmmmccc666666bb]bb333	chr3:184016936-184017279(+)$1	343	184	222	12.0819
ee!!a[ccc!!ffffffmmmmffffff333ccc]a22e	chr19:10443979-10444222(-)$1	243	68	106	12.8785
dddd[ggggggg[ddddmmmmdddd]ggggggg]dddd	chr17:73824852-73825109(-)$1	257	176	214	13.3805
======[a[bb####bbmmmmbb333bb]a]=======	chr17:1585217-1585429(-)$1	212	55	93	14.6542
d[dddd[eeeee####ammmma333eeeee]dddd]dd	chr3:47866439-47866737(+)$1	298	92	130	12.4330
ccc[a[eeeee"""cccmmmmccc22eeeee]accc]b	chr17:80050297-80050532(-)$1	235	19	57	14.1594
cc[dddd####ffffffmmmmffffffddddcccdddd	chrX:39931677-39931937(-)$1	260	28	66	11.5859
gggg!!bb!!gggggggmmmmggggggg22bb333ggg	chr17:38564221-38564476(-)$1	255	138	176	13.4429
$$$$ccc"""a[eeeeemmmmeeeee]a333cccccc2	chr11:62293389-62293666(-)$1	277	113	151	13.3764
:eeeeeeeeee!!ddddmmmmdddd]eeeee4444eee	chr15:44955559-44955896(-)$1	337	293	331	12.2842
eeeedddd[ccc"""bbmmmmbb4444ccc]dddd]ee	chr7:128488007-128488220(+)$1	213	6	44	13.3082
dddd!!a!!eeeee[ccclllccc]eeeee]a22dddd	chr22:21982750-21982971(-)$1	221	177	215	11.6531

#otherMatches

#Seq PSSM
GCUGCCCCUCCCGCCCGGUAGCGGCCCGGUGGGCAGCA	chr19:1621964-1622245(-)$1	281	108	146	15.3494
UUGUACAGAUUGUGGAAGAAAUUCCACGUUUACUGGGA	chr3:36897858-36898137(-)$1	279	183	221	11.8192
CACCAGGCCCUGACUACCAGGUACCAAGGGCCCUUGGC	chr9:134334525-134334803(+)$1	278	198	236	11.3361
AGCCGGGCCUGCUGAUCCCUGAGAUGAAGGACACCUCC	chr1:16053716-16054021(+)$1	305	19	57	11.7205
UGCCACAGCAGCAGCUCUACUGAGCUCUGGGGCUGUGG	chr1:19452912-19453137(-)$1	225	8	46	12.2454
CUGCAGGGUCUGCCUGGCGAAGCCCUGGGCUGCCCUGC	chr4:1729717-1729981(+)$1	264	204	242	13.2678
GGAGGAUAGAAGACAACGAAAGUUACUUGGGCUUCCUG	chr17:38560945-38561186(-)$1	241	104	142	15.3862
GGUCGCCAAGGUCCCAGAAAACUGCAGCUGGUGGUGGA	chr1:16258648-16258907(+)$1	259	31	69	14.5924
ACCCAGAAAUACUGGAUUGACAUCCAGUUGCGCUGGGG	chr17:1562616-1562866(-)$1	250	46	84	12.4829
CGGGCUGGGAGGUGGCUGUGCGGCCCCUGCUGUCCGCG	chr1:19536511-19536774(-)$1	263	111	149	13.0406
AUGCCCAUCAUGCAGUGGCUAUACUUUGAUGCCCUUGA	chrX:47062308-47062519(+)$1	211	51	89	13.6340
AACAGCCUGGAUGUGCAGCUUGCCCAGGAGCUCGGGGA	chr9:286426-286671(+)$1	245	94	132	12.8476
GGACCGCAUGUACCCGGACCUUUCCGAGCUGCUUAUGG	chr5:37370898-37371145(-)$1	247	173	211	13.2769
GAAGGUAAAACCUGACCGAAAGGAAGGACGACAGAGCU	chr2:54853120-54853426(+)$1	306	247	285	13.7966
GGGAUGUGGGCCCUUGAUUUUUUAUAGGAGGAGACAAC	chr12:6696596-6696823(-)$1	227	71	109	16.9197
CGUUACCAAUGCGCGAGAGGCCAUGCAGCAGGCGGAUG	chrX:153596000-153596205(-)$1	205	139	177	13.4166
CGCCCAGGUCAUGCUGUACUCACAGGGUUUCCGCACUG	chr14:102476213-102476472(+)$1	259	135	173	12.3743
AAGACCCCCAGGCCAGACCCCUGGAGGGGUCUUCCAGU	chr16:27475924-27476237(-)$1	313	213	251	12.4831
GGCUUUACCCGGACUGGGGAUCCGGAGAGGGUGGUUCG	chr2:216973981-216974266(+)$1	285	222	260	12.1853
GGGAGGGUCCCGGAUGGGGAGGAGCCCACCCCCGCAUC	chr6:31762676-31762925(-)$1	249	13	51	11.8179
GGUGGCUCGCCCAGCACCACAGUGACUGUGACAGCCCU	chrX:153219927-153220185(-)$1	258	122	160	13.4048
GGUGAGGCUGGAAAGGGAGUCCCUCAGUCCCCUCCGUG	chr5:149748994-149749238(+)$1	244	47	85	13.2525
UUCUACUUUGGGCUCAACAUUGAGACAGGUGAGAGUAG	chr11:61081238-61081473(-)$1	235	112	150	11.4332
CCUUUGUCUUUACAGAUAUCGAUCUGGUGGAGGGAAAU	chr1:202711427-202711731(-)$1	304	83	121	13.8001
ACCUGCUGCAUCCCCAGGACGCUGGAGGAGGCGGCCUC	chr17:80041894-80042128(-)$1	234	82	120	13.7862
AUUGAUGUGACACUGCCUACAGGUGAAGUGACUGUUCC	chr11:62300342-62300617(-)$1	275	79	117	12.4869
GUAGGUACCAUGACCUUGGCAAGGGUAGAGUCCUUGAG	chr12:120582347-120582577(-)$1	230	135	173	12.5210
UGGGAGCGUCAGUCAUCACGUGGUGUCUGGACCUUCCA	chr12:120611847-120612073(-)$1	226	104	142	13.6501
UACAAGACUAUAUGAAGGAACUUGGUAUUUUUGGUUUU	chr17:38562613-38562845(-)$1	232	58	96	11.0925
CCCCCACCAAGUGCCUUCCUGAAGGCCUGGGUGUAUUG	chr19:49377460-49377724(+)$1	264	26	64	11.9155
AGCAAAACCCAGGUACUGGCAAGUCCUGCUUUUGGUCU	chr3:184041199-184041444(+)$1	245	170	208	12.8111
CCCACGACUGCUACCACUACUGUUUCAAGUAAGUGUGG	chrX:53574615-53574886(-)$1	271	225	263	12.5634
UGCACCCUCACCUACCCCACCCGGGAGGAGGGACAGGG	chr1:201952103-201952343(+)$1	240	199	237	11.2037
ACUUUAGAUGAUAUGAGACGUCUCAUAGACCUAGGGGU	chr1:202710441-202710721(-)$1	280	81	119	11.3169
AGGCAAGUGACCAGGGUCGGGACCCGGGUCCUCGGAGU	chr1:109793608-109793900(+)$1	292	195	233	13.9482
CGCGCCACUUGGCCUGCCUCCGUCCCGCCGCGCCACUU	chr18:657593-657863(+)$1	270	53	91	13.5309
CCCAAGUCUAUGUCCAAGGAAGCUGUGGCCAUCUGCAA	chr16:24196680-24196914(+)$1	234	166	204	11.5234
CCGUGUGUCUUAGCGGGCCCUGCUCUACGAGGACGCAC	chr17:73839154-73839429(-)$1	275	69	107	12.9092
UGCCCUGGCCGGUCAUCAACUGAUCCGCGGCCUGGGGC	chr8:48872437-48872664(-)$1	227	58	96	14.7232
CACCCUGAAGCCCAGUCCCCAGGCGUGGCUACAGUUGG	chr17:78337356-78337595(+)$1	239	102	140	14.0346
AAGCUGGGCCGCCACGUGCGGGCGCUGGUGCUUGAGCU	chrX:47074113-47074347(+)$1	234	113	151	12.7438
ACUGCAAUAGUUGCUGGGACACCAAAGGCUUAGAGGAC	chr17:78292889-78293112(+)$1	223	128	166	14.6431
ggcCCCUCCCGCGGCGGGAGCACCGGAGGCGGGGGCGG	chr1:55680472-55680829(-)$1	357	286	324	11.6323
GGCACGGACGAGAAGCCGAGCGGCAAGGAGCGGCGGGA	chr3:184016936-184017279(+)$1	343	184	222	12.0819
GCCCCCGCUGAGCCCUAAGUCUGGGGCCGAAGUCGAAG	chr19:10443979-10444222(-)$1	243	68	106	12.8785
GUGGCUCUGAGGAGCCUGGUGAGGUGCCUCAGACCCGC	chr17:73824852-73825109(-)$1	257	176	214	13.3805
AGGCAGUGGGUAGAAAUGGUUGUGUGAUGUCUUGCCUU	chr17:1585217-1585429(-)$1	212	55	93	14.6542
GGCGGCCGCUAGGAGACUCAUGGCGCUGGCCGCCGGCA	chr3:47866439-47866737(+)$1	298	92	130	12.4330
UGGAGAGGUGACCUGGCCAGAGCCCCUCACCCCCCAUG	chr17:80050297-80050532(-)$1	235	19	57	14.1594
CGACUCCAUUCCUGGAGCCACCUCUGGGGAGCGAUGGC	chrX:39931677-39931937(-)$1	260	28	66	11.5859
GAGGGAGAUUCAGCCAAAACUUUGGCUGUUUCAGGCCU	chr17:38564221-38564476(-)$1	255	138	176	13.4429
UCAAAGGAGAAGGUCCAGAUGUGGACGUGAACCUGCCC	chr11:62293389-62293666(-)$1	277	113	151	13.3764
GGGCCCCUUCUGGCAGUAAGUGCUGAGGGAGAGUUGGG	chr15:44955559-44955896(-)$1	337	293	331	12.2842
UGGAGGUGCGGGACAAUGGAGAUGGCACCCACACUGUC	chr7:128488007-128488220(+)$1	213	6	44	13.3082
CCUCGACGACCUGGACUCCAAGAGGCCAGGGGAGGAGG	chr22:21982750-21982971(-)$1	221	177	215	11.6531

#DB
(((((((...(((.(((....)))..))).))))))).	chr19:1621964-1622245(-)$1	1	108	146	15.3494
((...(((..(((((((....)))))))....)))...	chr3:36897858-36898137(-)$1	1	183	221	11.8192
(((((((((((...(((...)))...))))))..))).	chr9:134334525-134334803(+)$1	1	198	236	11.3361
.(..((((((....(((.....)))..))).).))..)	chr1:16053716-16054021(+)$1	1	19	57	11.7205
(((((((((((.(((((....)))))))...)))))))	chr1:19452912-19453137(-)$1	1	8	46	12.2454
(((((((((..(((((((...)))..)))).)))))))	chr4:1729717-1729981(+)$1	1	204	242	13.2678
(((((....(((..(((....))).)))...)))))))	chr17:38560945-38561186(-)$1	1	104	142	15.3862
((((((((.(((..(((....)))..)))..)))).))	chr1:16258648-16258907(+)$1	1	31	69	14.5924
.(((((....(((((((....)))))))....)))))(	chr17:1562616-1562866(-)$1	1	46	84	12.4829
)((((.((.(((.((((....))))))).))))))(((	chr1:19536511-19536774(-)$1	1	111	149	13.0406
(.(..(((((...((((....)))).)))))..).)))	chrX:47062308-47062519(+)$1	1	51	89	13.6340
(....(((((....(((...))))))))...)))))..	chr9:286426-286671(+)$1	1	94	132	12.8476
..((((...(((.(((((....)))).).)))...)))	chr5:37370898-37371145(-)$1	1	173	211	13.2769
....((....(((..((....)).)))...))..)..)	chr2:54853120-54853426(+)$1	1	247	285	13.7966
..(.(.(...((..(((....)))..))...).))..)	chr12:6696596-6696823(-)$1	1	71	109	16.9197
.((((((..((((((.(....).))).)))...)).))	chrX:153596000-153596205(-)$1	1	139	177	13.4166
.((...((..((.((((....)))).))..))))))))	chr14:102476213-102476472(+)$1	1	135	173	12.3743
((((((((....((((....)))).))))))))))..)	chr16:27475924-27476237(-)$1	1	213	251	12.4831
))))))((((...((((....))))...))))(((((.	chr2:216973981-216974266(+)$1	1	222	260	12.1853
((((.((...(((.((((......))))...)))...)	chr6:31762676-31762925(-)$1	1	13	51	11.8179
(((.(.((((..(((((....))).))))))).)))))	chrX:153219927-153220185(-)$1	1	122	160	13.4048
.(.((((..(((.((((...))))...)))))))).))	chr5:149748994-149749238(+)$1	1	47	85	13.2525
((((((((.(..((((....)))).))))).)))).))	chr11:61081238-61081473(-)$1	1	112	150	11.4332
..(((.(((((((((((....)))).))))))).))).	chr1:202711427-202711731(-)$1	1	83	121	13.8001
(((.(((((.(((((((....)))).))).)))))...	chr17:80041894-80042128(-)$1	1	82	120	13.7862
(.....((.((..((((....))))..)).))...)))	chr11:62300342-62300617(-)$1	1	79	117	12.4869
..(((.((....(((((....)))))...)))))))))	chr12:120582347-120582577(-)$1	1	135	173	12.5210
((((((.(((((.((((....)))).)).)))))))))	chr12:120611847-120612073(-)$1	1	104	142	13.6501
((..(((((((((.(((...))).))))....))))))	chr17:38562613-38562845(-)$1	1	58	96	11.0925
(...((((.((.(((((....))))))).))))....)	chr19:49377460-49377724(+)$1	1	26	64	11.9155
(.(((((..((((.(((....))))))).))))).)))	chr3:184041199-184041444(+)$1	1	170	208	12.8111
.(((((..((((...((....))....))))..)))))	chrX:53574615-53574886(-)$1	1	225	263	12.5634
((..((((..(((.(((.....)))))))))).)))))	chr1:201952103-201952343(+)$1	1	199	237	11.2037
.((((((....((((((....))))))...))))))..	chr1:202710441-202710721(-)$1	1	81	119	11.3169
...(.((.((((.((((....)))).)))))).)...)	chr1:109793608-109793900(+)$1	1	195	233	13.9482
.((((.....(((..((....))...)))))))....)	chr18:657593-657863(+)$1	1	53	91	13.5309
(((..((..(((.(((((....)).))).)))..))..	chr16:24196680-24196914(+)$1	1	166	204	11.5234
))(((((((((...((((...))))....)))))))))	chr17:73839154-73839429(-)$1	1	69	107	12.9092
(((((((((((...(((....)))...))))).)))))	chr8:48872437-48872664(-)$1	1	58	96	14.7232
(((((((.((((..(((....)))..)))).)))..))	chr17:78337356-78337595(+)$1	1	102	140	14.0346
.((((.((.((((((((....))).))))).)).))))	chrX:47074113-47074347(+)$1	1	113	151	12.7438
.(((....((((..(((....)))..)))))))))).)	chr17:78292889-78293112(+)$1	1	128	166	14.6431
((((.(((((((..(((.....)))...))))))).))	chr1:55680472-55680829(-)$1	1	286	324	11.6323
(...((..((....(((....)))......)).))...	chr3:184016936-184017279(+)$1	1	184	222	12.0819
((..(.(((..((((((....))))))...))).)..)	chr19:10443979-10444222(-)$1	1	68	106	12.8785
((((.(((((((.((((....)))).))))))).))))	chr17:73824852-73825109(-)$1	1	176	214	13.3805
((((((.(.((....((....))...)).).)))))))	chr17:1585217-1585429(-)$1	1	55	93	14.6542
(.((((.(((((....(....)...))))).)))).))	chr3:47866439-47866737(+)$1	1	92	130	12.4330
(((.(.(((((...(((....)))..))))).)))).)	chr17:80050297-80050532(-)$1	1	19	57	14.1594
((.((((....((((((....)))))))))))))))))	chrX:39931677-39931937(-)$1	1	28	66	11.5859
((((..((..(((((((....)))))))..))...)))	chr17:38564221-38564476(-)$1	1	138	176	13.4429
....(((...(.(((((....))))).)...)))))).	chr11:62293389-62293666(-)$1	1	113	151	13.3764
.((((((((((..((((....)))).)))))....)))	chr15:44955559-44955896(-)$1	1	293	331	12.2842
((((((((.(((...((....))....))).)))).))	chr7:128488007-128488220(+)$1	1	6	44	13.3082
((((..(..(((((.(((...))).))))).)..))))	chr22:21982750-21982971(-)$1	1	177	215	11.6531

#PSSM
d : 0.20	! : 0.12	e : 0.10	f : 0.09	[ : 0.07	g : 0.05	= : 0.05	# : 0.05	i : 0.05	: : 0.03	$ : 0.03	b : 0.03	c : 0.03	a : 0.01	h : 0.01	
d : 0.20	e : 0.14	f : 0.09	# : 0.07	c : 0.07	g : 0.05	a : 0.05	= : 0.05	[ : 0.05	! : 0.05	i : 0.05	$ : 0.03	" : 0.03	b : 0.01	
d : 0.21	c : 0.10	e : 0.10	g : 0.07	! : 0.07	i : 0.07	" : 0.05	= : 0.05	# : 0.05	f : 0.05	a : 0.03	[ : 0.03	$ : 0.03	b : 0.01	
d : 0.23	! : 0.10	e : 0.10	c : 0.09	g : 0.07	" : 0.07	[ : 0.07	i : 0.07	= : 0.03	# : 0.03	f : 0.03	$ : 0.03	a : 0.01	
d : 0.23	e : 0.12	c : 0.09	! : 0.07	a : 0.07	[ : 0.07	g : 0.05	b : 0.05	i : 0.05	" : 0.03	= : 0.03	# : 0.03	f : 0.03	$ : 0.01	
d : 0.16	e : 0.14	[ : 0.14	b : 0.12	g : 0.09	c : 0.05	f : 0.05	i : 0.05	= : 0.03	# : 0.03	$ : 0.03	! : 0.03	" : 0.01	
b : 0.18	d : 0.16	e : 0.14	g : 0.09	c : 0.07	# : 0.07	a : 0.05	[ : 0.05	f : 0.03	i : 0.03	! : 0.03	= : 0.01	" : 0.01	$ : 0.01	
e : 0.14	d : 0.12	! : 0.12	# : 0.10	b : 0.10	" : 0.09	c : 0.07	g : 0.07	i : 0.03	[ : 0.03	f : 0.01	= : 0.01	$ : 0.01	a : 0.01	
! : 0.16	[ : 0.14	e : 0.14	# : 0.12	d : 0.10	" : 0.09	g : 0.07	c : 0.05	f : 0.01	= : 0.01	$ : 0.01	i : 0.01	b : 0.01	
c : 0.18	e : 0.14	d : 0.14	! : 0.10	# : 0.10	b : 0.09	" : 0.07	g : 0.05	f : 0.01	a : 0.01	[ : 0.01	$ : 0.01	i : 0.01	
c : 0.25	# : 0.12	b : 0.12	g : 0.10	d : 0.10	e : 0.10	! : 0.07	" : 0.03	f : 0.01	i : 0.01	a : 0.01	
c : 0.25	d : 0.12	g : 0.10	" : 0.10	# : 0.10	! : 0.07	[ : 0.05	b : 0.05	f : 0.05	e : 0.05	
" : 0.14	! : 0.14	[ : 0.14	c : 0.12	e : 0.10	# : 0.09	d : 0.09	g : 0.07	f : 0.05	b : 0.01	
d : 0.27	! : 0.14	" : 0.10	e : 0.10	[ : 0.09	# : 0.09	g : 0.05	f : 0.05	c : 0.03	a : 0.01	b : 0.01	
c : 0.36	d : 0.32	e : 0.07	g : 0.05	f : 0.05	! : 0.03	" : 0.03	# : 0.03	[ : 0.01	
c : 0.38	d : 0.30	b : 0.09	e : 0.07	g : 0.05	f : 0.05	[ : 0.01	# : 0.01	
c : 0.36	d : 0.27	b : 0.10	e : 0.07	g : 0.05	f : 0.05	a : 0.03	m : 0.03	
m : 0.76	l : 0.07	n : 0.05	d : 0.05	c : 0.03	b : 0.01	
m : 0.80	l : 0.12	n : 0.05	o : 0.01	
m : 0.80	l : 0.12	n : 0.05	o : 0.01	
m : 0.76	c : 0.05	n : 0.05	l : 0.05	d : 0.05	o : 0.01	
c : 0.30	d : 0.27	b : 0.09	e : 0.07	g : 0.05	n : 0.05	f : 0.05	m : 0.03	a : 0.03	o : 0.01	
c : 0.36	d : 0.29	b : 0.10	e : 0.07	g : 0.05	f : 0.05	] : 0.01	o : 0.01	3 : 0.01	
c : 0.32	d : 0.29	e : 0.09	3 : 0.07	g : 0.05	f : 0.05	] : 0.03	4 : 0.03	o : 0.01	b : 0.01	
d : 0.29	2 : 0.12	] : 0.12	3 : 0.10	c : 0.09	e : 0.09	g : 0.05	f : 0.05	4 : 0.03	6 : 0.01	
2 : 0.16	e : 0.14	] : 0.14	3 : 0.12	c : 0.10	d : 0.07	g : 0.05	4 : 0.05	f : 0.05	i : 0.01	b : 0.01	a : 0.01	6 : 0.01	
c : 0.16	d : 0.14	b : 0.12	e : 0.12	g : 0.09	3 : 0.09	f : 0.07	] : 0.05	4 : 0.05	2 : 0.03	i : 0.01	6 : 0.01	
c : 0.21	d : 0.20	e : 0.14	b : 0.12	3 : 0.10	g : 0.09	a : 0.03	f : 0.01	i : 0.01	4 : 0.01	6 : 0.01	
3 : 0.18	d : 0.18	c : 0.14	] : 0.12	e : 0.12	4 : 0.07	g : 0.05	2 : 0.03	f : 0.01	i : 0.01	b : 0.01	6 : 0.01	
d : 0.21	3 : 0.16	e : 0.14	c : 0.12	] : 0.05	4 : 0.05	2 : 0.05	g : 0.05	b : 0.03	i : 0.03	f : 0.01	6 : 0.01	a : 0.01	
] : 0.16	b : 0.14	d : 0.14	3 : 0.12	e : 0.10	c : 0.09	g : 0.07	4 : 0.05	f : 0.03	i : 0.03	2 : 0.01	
d : 0.18	c : 0.18	b : 0.12	g : 0.09	e : 0.09	4 : 0.07	a : 0.07	f : 0.03	= : 0.03	2 : 0.03	i : 0.03	3 : 0.01	] : 0.01	
c : 0.14	d : 0.14	] : 0.12	e : 0.12	2 : 0.10	g : 0.09	3 : 0.07	i : 0.05	= : 0.03	b : 0.03	f : 0.01	a : 0.01	4 : 0.01	
e : 0.16	c : 0.14	d : 0.10	g : 0.07	2 : 0.07	b : 0.07	] : 0.07	= : 0.05	a : 0.05	3 : 0.05	i : 0.05	4 : 0.05	f : 0.01	
d : 0.16	e : 0.14	c : 0.10	g : 0.09	3 : 0.09	a : 0.09	b : 0.07	= : 0.05	4 : 0.05	] : 0.03	f : 0.03	i : 0.03	2 : 0.01	
e : 0.16	] : 0.12	2 : 0.10	d : 0.10	g : 0.09	c : 0.09	3 : 0.07	= : 0.05	f : 0.05	i : 0.03	4 : 0.03	5 : 0.01	a : 0.01	b : 0.01	
d : 0.18	e : 0.14	c : 0.10	2 : 0.10	g : 0.09	3 : 0.09	= : 0.05	f : 0.05	4 : 0.05	i : 0.03	] : 0.03	5 : 0.01	b : 0.01	
d : 0.23	e : 0.14	b : 0.09	g : 0.07	f : 0.07	] : 0.05	= : 0.05	c : 0.05	3 : 0.05	a : 0.03	i : 0.03	2 : 0.03	5 : 0.01	4 : 0.01	q : 0.01	

#score	714.1603906648731
#seq	55
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_transcript_m1_run2.txt

#BEAR
e[bb!!a[ccc"""a[cccmmmmccc]a333ccc]a22bb	chr11:68135064-68135344(+)$1	280	57	97	13.2312
c"""bb!!cccbb[cccnnnnnccc]bb]cccbb333ccc	chr9:14843600-14843852(-)$1	252	179	219	13.6569
ggg[ccc"""cccddddnnnnndddd]ccccccggggggg	chr20:31046076-31046332(-)$1	256	31	71	12.7051
iiiii!!a[ccc!!ddddnnnnndddd4444ccc]a22ii	chr2:58418554-58418849(-)$1	295	88	128	14.1684
r===========eeeeeooooooeeeeea[gggggggccc	chr16:31199289-31199540(+)$1	251	179	219	18.1607
$$ccc[ccc!!==========mmmm==========22ccc	chr17:70549266-70549529(-)$1	263	138	178	13.9289
hh!!ccc[iiiiiiiiiooooooiiiiiiiii22ccc]hh	chr10:79799454-79799747(+)$1	293	134	174	17.6487
"bb!!dddd[ccc[cccrrrrrrrrrcccccc]dddd]bb	chr3:48471150-48471414(-)$1	264	65	105	11.7084
ff!!iiiiiiiii[ccclllccciiiiiiiii22ffffff	chr6:4777321-4777600(+)$1	279	36	76	14.2371
=========ffffffbboooooobb22ffffff]======	chr15:99193636-99193918(+)$1	282	152	192	16.5390
eeee!!===========oooooo===========333eee	chr2:149639192-149639433(-)$1	241	115	155	19.7767
b$$$$$eeeeebb[cccooooooccc]bb]eeeee22bb4	chr9:110046071-110046350(+)$1	279	230	270	14.3421
fff!!==========[aooooooa]==========22fff	chr16:88730098-88730365(+)$1	267	67	107	19.8412
ddd"""bbiiiiiiiiiooooooiiiiiiiii>>>>>>>>	chr1:1206068-1206337(-)$1	269	39	79	16.0742
"""bb"""gggggggbboooooobb]ggggggg333bb]b	chr13:113379980-113380311(+)$1	331	230	270	16.8025
f####bbddddbb[cccooooooccc22bb22dddd]bb3	chr17:7077797-7078044(-)$1	247	162	202	14.2145
==========!!eeeeeooooooeeeee4444========	chr11:65194337-65194552(+)$1	215	3	43	20.3581
iiiiiiccc"""a[a[bboooooobb]a]a333cccccc[	chr17:55364671-55364935(+)$1	264	89	129	16.5493
$iiiiiiiii####ddddnnnnnddddiiiiiiiiigggg	chr1:1242478-1242725(-)$1	247	122	162	15.4003
iiiiiiiii"""bb[bboooooobbbb333iiiiiiiii]	chr8:121823182-121823441(-)$1	259	10	50	18.4809
####ccc"""gggggggaooooooa]ggggggg55555cc	chr20:62362933-62363211(+)$1	278	193	233	13.7732
==========!!eeeeeooooooeeeee4444========	chr11:65194239-65194453(+)$1	214	101	141	20.3581
e!!ccc"""==========mmmm==========ccceeee	chr8:144675066-144675279(-)$1	213	10	50	14.9856
======[ggggggg[bbrrrrrrrrrbbggggggg22===	chr11:70449341-70449626(-)$1	285	108	148	14.9043
cccggggggg[ccccccooooooccc]ccc]gggggggBB	chr21:47563066-47563307(-)$1	241	115	155	15.7360
ccc"""bb[a[eeeeeooooooeeeeea]bb333ccc]bb	chr17:7477028-7477309(+)$1	281	61	101	14.6817
ffiiiiiiiii[eeeeeooooooeeeeeiiiiiiiii:::	chr16:31199358-31199603(+)$1	245	25	65	15.8778
===========[a[ccc[ammmma]ccc]a]=========	chr16:68331309-68331656(+)$1	347	233	273	17.5077
ee[cccbb[hhhhhhhhoooooohhhhhhhh]bb333ccc	chr16:81487438-81487670(+)$1	232	8	48	13.7825
a"""bb[ccc[ffffffooooooffffff22ccc]bb333	chr20:62513677-62513949(+)$1	272	139	179	15.2113
g####bb[a[ccc[bboooooobb]ccc]a]bb4444ggg	chr9:126691931-126692225(-)$1	294	235	275	15.6662
========eeeee!!bboooooobb]eeeee:dddd[ddd	chr16:2580590-2580881(+)$1	291	123	163	13.8607
[aggggggg!!ggggggglllggggggg22ggggggg]a]	chr22:20111296-20111563(+)$1	267	214	254	13.7815
==========!!eeeeeooooooeeeee4444========	chr11:65194304-65194519(+)$1	215	36	76	20.3581
r===========eeeeeooooooeeeeea[gggggggccc	chr16:31199340-31199558(+)$1	218	128	168	18.1607
=============[cccrrrrrrrrrccc]==========	chr21:47560620-47560860(-)$1	240	99	139	17.7932
==========!!eeeeeooooooeeeee4444========	chr11:65194263-65194481(+)$1	218	77	117	20.3581
$$$$$iiiiiiiii!!bblllbb22iiiiiiiii4444bb	chr3:12329490-12329764(+)$1	274	185	225	14.1811
iiiiiii[bb"""ddddooooooddddbb]iiiiiiiii]	chr2:128568064-128568371(-)$1	307	64	104	17.6832
:cccbb[===========mmmm===========bb22ccc	chr16:2581146-2581444(+)$1	298	47	87	14.1785
dd!!eeeee####ddddoooooodddd4444eeeee333d	chr11:82535691-82535970(-)$1	279	17	57	15.2660
=================oooooo=================	chr17:53354586-53354816(+)$1	230	26	66	22.1212
####iiiiiiiii[cccooooooccciiiiiiiii333bb	chr21:47560043-47560310(-)$1	267	28	68	21.0561
i!!===========rrrrrrrrr===========iiiiii	chr20:362229-362561(+)$1	332	258	298	17.7734
[cccggggggga!!cccmmmmccc22a]ggggggg4444c	chr2:11769627-11769918(+)$1	291	23	63	13.1489
bb!!hhhhhhhheeeeeooooooeeeee333hhhhhhhh]	chr8:134308518-134308847(-)$1	329	190	230	14.2906
!!a!!dddd!!bbddddoooooodddd]bb22dddd22a2	chr9:136750913-136751172(-)$1	259	177	217	14.3115
==========="""cccpppppppccc============f	chr11:65194140-65194358(+)$1	218	85	125	15.6667
a[dddd[dddd[a[cccooooooccc]a333dddd]dddd	chr14:105259208-105259485(-)$1	277	58	98	15.1630
[aiiiiiiiii[a[bboooooobb]aiiiiiiiii]a]dd	chr20:24943988-24944271(-)$1	283	160	200	17.8515
giiiiiiiii[bb!!bboooooobb22bb]iiiiiiiii]	chr17:70549538-70549839(-)$1	301	248	288	18.1212

#otherMatches

#Seq PSSM
GGCGGAAAGGGAAAGAGUGAGGACAUACGGGCUCAUGACG	chr11:68135064-68135344(+)$1	280	57	97	13.2312
CUGaagaauaaccaacauuuauuguaggcuuacuguugcU	chr9:14843600-14843852(-)$1	252	179	219	13.6569
GUCUGUCCUGGUGGGGCAGAUGGCCCUCACGAUGACCCUG	chr20:31046076-31046332(-)$1	256	31	71	12.7051
UAUUUACGUGCAGUAAACAAGGAGUUUUCUAUGCUCAAAA	chr2:58418554-58418849(-)$1	295	88	128	14.1684
CUCUGGGCAGGCGACCCAGGAAAGGGUUUGGAGUGAGGCU	chr16:31199289-31199540(+)$1	251	179	219	18.1607
UUCCACGCGUCUGGGGGCGGGACUUUCUGUCUUUAUCUGC	chr17:70549266-70549529(-)$1	263	138	178	13.9289
CUGGUGUGUGUCCAGCACAAUGUUGCUGGGCAGAGCAGAG	chr10:79799454-79799747(+)$1	293	134	174	17.6487
GGCGAGGCCGGGCGCUGGCAGAAGAACGGGUCGGGCUGGU	chr3:48471150-48471414(-)$1	264	65	105	11.7084
CCGUUGCCGCUCGGCGGGGACCGUGGGCGGUACGGGGGGU	chr6:4777321-4777600(+)$1	279	36	76	14.2371
GGGUGUGUGGUCGGAGCCGACGUGCAUUCCGACACACGUG	chr15:99193636-99193918(+)$1	282	152	192	16.5390
GUUCACCCUCUAAAUCACCACGAUGAUUUAGAGGUAAGGA	chr2:149639192-149639433(-)$1	241	115	155	19.7767
CGUAGAGCCUGGCUUUCUGGUAUGGGUGCACAGGUGGGGG	chr9:110046071-110046350(+)$1	279	230	270	14.3421
GCUGAGGGGAGGGCGGGUCGCGCUGUGCCCUCCUUGAAGC	chr16:88730098-88730365(+)$1	267	67	107	19.8412
UUUGGAGUGGGACCUGGGCCGUGCUGGGUCUUGGGAGUUG	chr1:1206068-1206337(-)$1	269	39	79	16.0742
GAGGUGACGAGGGUGCCCCUGAAGGACGCCCUCAGAGCAA	chr13:113379980-113380311(+)$1	331	230	270	16.8025
GUGUUCGGGUCCCAGCAGGAGGAUGUAGGGCUGACCUCGU	chr17:7077797-7078044(-)$1	247	162	202	14.2145
AUUUUUGUUUGGUUAGGGGAAAGCCUGAAUAAAAACAGAA	chr11:65194337-65194552(+)$1	215	3	43	20.3581
AGGGGUCCUGUGGGGGACAGAAUAGUGUGUGUGAGGGGCU	chr17:55364671-55364935(+)$1	264	89	129	16.5493
AGUCUGCAUGUUUUCCAUCAUUCGUGGCGUGCAGGCGUGU	chr1:1242478-1242725(-)$1	247	122	162	15.4003
CACUCGGCCACAUGCGGACACACCCCAGGGGGCCGGGUGU	chr8:121823182-121823441(-)$1	259	10	50	18.4809
auauccaucauuucaaccaaucucgaguugaaaauaauug	chr20:62362933-62363211(+)$1	278	193	233	13.7732
AUUUUUGUUUGGUUAGGGGAAAGCCUGAAUAAAAACAGAA	chr11:65194239-65194453(+)$1	214	101	141	20.3581
CAGUGCAGGUGAGGGGCUUGGGGGAGCUCCUUGGCAGCUC	chr8:144675066-144675279(-)$1	213	10	50	14.9856
CUCCUUCGGGCAGCUGGGAAGAUGGGCUGCUGCCCCAGAG	chr11:70449341-70449626(-)$1	285	108	148	14.9043
CAUGUGCCCCAGCCUCUGGAGCAGGGCGGUGGGGGCGCCU	chr21:47563066-47563307(-)$1	241	115	155	15.7360
UCCGGGCAACGCGAGGGGGGGGCUUCGGCUGGAGGGAGUG	chr17:7477028-7477309(+)$1	281	61	101	14.6817
GGGGAGGCAGCAUUUGCUGAAGUGUGGAGUUGUCUCUGUG	chr16:31199358-31199603(+)$1	245	25	65	15.8778
AAUGCUAGGUUGAUAGGGCUGGUGGCUUCUGAAUUUGGUA	chr16:68331309-68331656(+)$1	347	233	273	17.5077
GUUUGUAGAUCUGGCCGCUUGGuuggcuagaacucagaca	chr16:81487438-81487670(+)$1	232	8	48	13.7825
GGGGGCCGAGACUCGGCAGGGUCGCCGAGAGCUCAGUGAG	chr20:62513677-62513949(+)$1	272	139	179	15.2113
ggggugcgcgcgggguggcagggcgccgggggUCAGGUGU	chr9:126691931-126692225(-)$1	294	235	275	15.6662
GGGAACAGCCAGGGAAGAACCACCUGCCUGGGCAGGGCCU	chr16:2580590-2580881(+)$1	291	123	163	13.8607
GGGUGGUGGUCUGCCUAUGCCAUGGGCACCUCACUGCACG	chr22:20111296-20111563(+)$1	267	214	254	13.7815
AUUUUUGUUUGGUUAGGGGAAAGCCUGAAUAAAAACAGAA	chr11:65194304-65194519(+)$1	215	36	76	20.3581
CUCUGGGCAGGCGACCCAGGAAAGGGUUUGGAGUGAGGCU	chr16:31199340-31199558(+)$1	218	128	168	18.1607
UUACGCUCCCUGUGAGCAAUGUGAAGGCUGACGGGGAGUG	chr21:47560620-47560860(-)$1	240	99	139	17.7932
AUUUUUGUUUGGUUAGGGGAAAGCCUGAAUAAAAACAGAA	chr11:65194263-65194481(+)$1	218	77	117	20.3581
AGGGGGUCUCGGCUGAGGGGUCCGGGGCUGAGGCAGGGUC	chr3:12329490-12329764(+)$1	274	185	225	14.1811
GUUAAGACGUGAAGUUUGGAGGGAAAUGCAUUUUAACUGA	chr2:128568064-128568371(-)$1	307	64	104	17.6832
CGCCCCACCUCCCUGGCUGGAGGGUCGGGGAGGGGCUGGC	chr16:2581146-2581444(+)$1	298	47	87	14.1785
CACUGAGAAACUUUUGAUUGUUUUCAAUUUCUUCUUUUAU	chr11:82535691-82535970(-)$1	279	17	57	15.2660
ugugugugugugugugugugugugcgcgcgcauguguacg	chr17:53354586-53354816(+)$1	230	26	66	22.1212
GGACGGGGGAGUGCUGGGUUGGUUUACACUCCCUCUGAGC	chr21:47560043-47560310(-)$1	267	28	68	21.0561
UGGACGGUGCGCGCGUGUCUGCGGUGUGUGCUGUGCCUGC	chr20:362229-362561(+)$1	332	258	298	17.7734
AGCAUAUGCAGCUAGUGUUAAUAUGUGAUUGCAUGUAACU	chr2:11769627-11769918(+)$1	291	23	63	13.1489
GCAGGGUGCGCCCCCGGAGGAACCCGGGAUUGGCGCAUCG	chr8:134308518-134308847(-)$1	329	190	230	14.2906
UUGUCACCAAUGGGCCGUCCCAGUGGCGCCUGUGGUUCCU	chr9:136750913-136751172(-)$1	259	177	217	14.3115
CAUUGGUUUGAAAUGUGAUGAAACCACUCAAGCCAAUGAA	chr11:65194140-65194358(+)$1	218	85	125	15.6667
UGAUUUGUCCAACGGCUGGGGGAGGUGGGAAUGGGGAGGU	chr14:105259208-105259485(-)$1	277	58	98	15.1630
GGAGCAGUAAGGCACUACCCAGAGAGCUUGCUGCUGCGGC	chr20:24943988-24944271(-)$1	283	160	200	17.8515
cgcccacguggaugaguguguggaugggugugugugggcu	chr17:70549538-70549839(-)$1	301	248	288	18.1212

#DB
(.((..(.(((...(.(((....))).)...))).)..))	chr11:68135064-68135344(+)$1	1	57	97	13.2312
(...((..(((((.(((.....))).)).)))))...)))	chr9:14843600-14843852(-)$1	1	179	219	13.6569
(((.(((...(((((((.....)))).)))))))))))))	chr20:31046076-31046332(-)$1	1	31	71	12.7051
(((((..(.(((..((((.....))))....))).)..))	chr2:58418554-58418849(-)$1	1	88	128	14.1684
.)))))))))))(((((......)))))(.((((((((((	chr16:31199289-31199540(+)$1	1	179	219	18.1607
..(((.(((..((((((((((....))))))))))..)))	chr17:70549266-70549529(-)$1	1	138	178	13.9289
((..(((.(((((((((......)))))))))..))).))	chr10:79799454-79799747(+)$1	1	134	174	17.6487
.((..((((.(((.(((.........)))))).)))).))	chr3:48471150-48471414(-)$1	1	65	105	11.7084
((..(((((((((.(((...))))))))))))..))))))	chr6:4777321-4777600(+)$1	1	36	76	14.2371
(((((((((((((((((......))..)))))).))))))	chr15:99193636-99193918(+)$1	1	152	192	16.5390
((((..(((((((((((......)))))))))))...)))	chr2:149639192-149639433(-)$1	1	115	155	19.7767
(.....(((((((.(((......))).)).)))))..)).	chr9:110046071-110046350(+)$1	1	230	270	14.3421
(((..((((((((((.(......).))))))))))..)))	chr16:88730098-88730365(+)$1	1	67	107	19.8412
(((...(((((((((((......)))))))))........	chr1:1206068-1206337(-)$1	1	39	79	16.0742
...((...(((((((((......)).)))))))...)).)	chr13:113379980-113380311(+)$1	1	230	270	16.8025
(....((((((((.(((......)))..))..)))).)).	chr17:7077797-7078044(-)$1	1	162	202	14.2145
((((((((((..(((((......)))))....))))))))	chr11:65194337-65194552(+)$1	1	3	43	20.3581
))))))(((...(.(.((......)).).)...)))(((.	chr17:55364671-55364935(+)$1	1	89	129	16.5493
.(((((((((....((((.....)))))))))))))))))	chr1:1242478-1242725(-)$1	1	122	162	15.4003
(((((((((...((.((......))))...))))))))).	chr8:121823182-121823441(-)$1	1	10	50	18.4809
....(((...((((((((......).))))))).....))	chr20:62362933-62363211(+)$1	1	193	233	13.7732
((((((((((..(((((......)))))....))))))))	chr11:65194239-65194453(+)$1	1	101	141	20.3581
(..(((...((((((((((....)))))))))))))))))	chr8:144675066-144675279(-)$1	1	10	50	14.9856
((((((.(((((((.((.........)))))))))..)))	chr11:70449341-70449626(-)$1	1	108	148	14.9043
)))(((((((.((((((......))).))).)))))))))	chr21:47563066-47563307(-)$1	1	115	155	15.7360
(((...((.(.(((((......)))))).))...))).))	chr17:7477028-7477309(+)$1	1	61	101	14.6817
))(((((((((.(((((......))))))))))))))...	chr16:31199358-31199603(+)$1	1	25	65	15.8778
(((((((((((.(.(((.(....).))).).)))))))))	chr16:68331309-68331656(+)$1	1	233	273	17.5077
((.(((((.((((((((......)))))))).))...)))	chr16:81487438-81487670(+)$1	1	8	48	13.7825
(...((.(((.((((((......))))))..))).))...	chr20:62513677-62513949(+)$1	1	139	179	15.2113
(....((.(.(((.((......)).))).).))....)))	chr9:126691931-126692225(-)$1	1	235	275	15.6662
))))))))(((((..((......)).))))).((((.(((	chr16:2580590-2580881(+)$1	1	123	163	13.8607
.((((((((..(((((((...)))))))..))))))).).	chr22:20111296-20111563(+)$1	1	214	254	13.7815
((((((((((..(((((......)))))....))))))))	chr11:65194304-65194519(+)$1	1	36	76	20.3581
.)))))))))))(((((......)))))(.((((((((((	chr16:31199340-31199558(+)$1	1	128	168	18.1607
(((((((((((((.(((.........))).))))))))))	chr21:47560620-47560860(-)$1	1	99	139	17.7932
((((((((((..(((((......)))))....))))))))	chr11:65194263-65194481(+)$1	1	77	117	20.3581
.....(((((((((..((...))..)))))))))....))	chr3:12329490-12329764(+)$1	1	185	225	14.1811
(((((((.((...((((......)))))).))))))))).	chr2:128568064-128568371(-)$1	1	64	104	17.6832
.(((((.(((((((((((....)))))))))))))..)))	chr16:2581146-2581444(+)$1	1	47	87	14.1785
((..(((((....((((......))))....)))))...)	chr11:82535691-82535970(-)$1	1	17	57	15.2660
(((((((((((((((((......)))))))))))))))))	chr17:53354586-53354816(+)$1	1	26	66	22.1212
....(((((((((.(((......))))))))))))...))	chr21:47560043-47560310(-)$1	1	28	68	21.0561
(..(((((((((((.........)))))))))))))))))	chr20:362229-362561(+)$1	1	258	298	17.7734
.(((((((((((..(((....)))..).)))))))....)	chr2:11769627-11769918(+)$1	1	23	63	13.1489
((..(((((((((((((......)))))...)))))))).	chr8:134308518-134308847(-)$1	1	190	230	14.2906
..(..((((..((((((......)))).))..))))..).	chr9:136750913-136751172(-)$1	1	177	217	14.3115
(((((((((((...(((.......)))))))))))))))(	chr11:65194140-65194358(+)$1	1	85	125	15.6667
(.((((.((((.(.(((......))).)...)))).))))	chr14:105259208-105259485(-)$1	1	58	98	15.1630
.((((((((((.(.((......)).)))))))))).).))	chr20:24943988-24944271(-)$1	1	160	200	17.8515
((((((((((.((..((......))..)).))))))))).	chr17:70549538-70549839(-)$1	1	248	288	18.1212

#PSSM
= : 0.21	i : 0.09	e : 0.07	f : 0.07	c : 0.05	g : 0.05	$ : 0.05	[ : 0.05	r : 0.03	" : 0.03	b : 0.03	d : 0.03	# : 0.03	a : 0.03	h : 0.01	: : 0.01	! : 0.01	
= : 0.25	i : 0.11	# : 0.07	c : 0.07	" : 0.05	$ : 0.05	f : 0.05	! : 0.05	[ : 0.03	b : 0.03	e : 0.03	d : 0.03	a : 0.03	g : 0.01	h : 0.01	
= : 0.25	i : 0.15	! : 0.11	c : 0.09	# : 0.07	" : 0.05	b : 0.03	g : 0.03	$ : 0.03	d : 0.03	e : 0.01	f : 0.01	[ : 0.01	a : 0.01	
= : 0.27	i : 0.15	! : 0.13	c : 0.09	" : 0.07	# : 0.07	b : 0.03	$ : 0.03	g : 0.03	[ : 0.01	e : 0.01	d : 0.01	
= : 0.27	i : 0.19	c : 0.11	! : 0.09	b : 0.07	g : 0.05	$ : 0.03	" : 0.03	# : 0.03	e : 0.01	h : 0.01	d : 0.01	
= : 0.29	i : 0.19	b : 0.09	c : 0.09	! : 0.05	d : 0.05	" : 0.05	g : 0.05	[ : 0.01	$ : 0.01	e : 0.01	h : 0.01	
= : 0.29	i : 0.17	c : 0.09	b : 0.09	[ : 0.07	g : 0.05	! : 0.03	d : 0.03	e : 0.03	" : 0.03	a : 0.01	h : 0.01	
= : 0.31	i : 0.15	[ : 0.07	" : 0.07	d : 0.07	g : 0.07	c : 0.05	b : 0.05	e : 0.03	! : 0.01	a : 0.01	h : 0.01	
= : 0.29	i : 0.19	c : 0.09	g : 0.09	d : 0.07	" : 0.05	[ : 0.05	e : 0.05	a : 0.01	b : 0.01	h : 0.01	
= : 0.29	i : 0.17	c : 0.07	" : 0.07	g : 0.07	! : 0.05	[ : 0.03	e : 0.03	d : 0.03	h : 0.03	f : 0.01	a : 0.01	b : 0.01	# : 0.01	
= : 0.21	! : 0.13	i : 0.13	c : 0.11	g : 0.07	[ : 0.07	" : 0.05	e : 0.03	d : 0.03	# : 0.03	h : 0.03	f : 0.01	
= : 0.19	" : 0.09	b : 0.09	c : 0.09	i : 0.09	g : 0.07	! : 0.07	[ : 0.07	f : 0.03	# : 0.03	e : 0.03	h : 0.03	a : 0.01	
e : 0.19	= : 0.15	b : 0.11	i : 0.09	c : 0.07	g : 0.07	a : 0.07	" : 0.05	! : 0.03	f : 0.03	# : 0.03	h : 0.01	
[ : 0.23	e : 0.17	= : 0.13	d : 0.07	! : 0.07	g : 0.07	i : 0.05	" : 0.03	f : 0.03	# : 0.01	b : 0.01	c : 0.01	h : 0.01	
c : 0.23	e : 0.17	d : 0.11	= : 0.11	g : 0.05	! : 0.05	a : 0.03	i : 0.03	f : 0.03	[ : 0.03	b : 0.03	h : 0.01	r : 0.01	
c : 0.23	e : 0.17	b : 0.15	d : 0.11	= : 0.09	[ : 0.05	i : 0.03	g : 0.03	h : 0.01	f : 0.01	! : 0.01	r : 0.01	
c : 0.25	e : 0.15	b : 0.15	d : 0.11	= : 0.09	o : 0.05	i : 0.03	g : 0.03	a : 0.01	h : 0.01	f : 0.01	r : 0.01	
o : 0.60	r : 0.07	= : 0.05	n : 0.03	d : 0.03	b : 0.03	c : 0.01	l : 0.01	a : 0.01	[ : 0.01	g : 0.01	m : 0.01	p : 0.01	
o : 0.64	n : 0.07	r : 0.07	l : 0.05	= : 0.03	m : 0.03	c : 0.01	a : 0.01	p : 0.01	
o : 0.64	m : 0.09	n : 0.07	r : 0.07	l : 0.05	= : 0.01	p : 0.01	
o : 0.64	m : 0.09	n : 0.07	r : 0.07	l : 0.03	= : 0.01	c : 0.01	p : 0.01	
o : 0.64	m : 0.09	n : 0.07	r : 0.07	c : 0.03	g : 0.01	b : 0.01	p : 0.01	
o : 0.58	m : 0.07	r : 0.07	c : 0.05	b : 0.05	n : 0.03	d : 0.01	e : 0.01	g : 0.01	= : 0.01	p : 0.01	
e : 0.17	c : 0.15	b : 0.13	d : 0.11	= : 0.09	i : 0.05	r : 0.05	a : 0.03	o : 0.03	m : 0.01	h : 0.01	f : 0.01	g : 0.01	2 : 0.01	p : 0.01	
e : 0.17	c : 0.15	d : 0.11	b : 0.11	= : 0.09	] : 0.07	i : 0.05	r : 0.05	2 : 0.03	m : 0.01	a : 0.01	h : 0.01	f : 0.01	g : 0.01	
c : 0.17	e : 0.17	= : 0.13	d : 0.11	] : 0.07	i : 0.07	r : 0.05	2 : 0.05	b : 0.03	h : 0.01	f : 0.01	g : 0.01	a : 0.01	
e : 0.19	= : 0.13	] : 0.11	i : 0.11	d : 0.09	c : 0.09	b : 0.05	2 : 0.05	g : 0.05	h : 0.01	f : 0.01	a : 0.01	
e : 0.17	= : 0.15	i : 0.13	c : 0.11	b : 0.09	a : 0.07	g : 0.05	4 : 0.03	f : 0.03	] : 0.03	2 : 0.01	3 : 0.01	h : 0.01	
= : 0.15	i : 0.15	4 : 0.11	] : 0.09	b : 0.09	3 : 0.07	c : 0.07	g : 0.07	a : 0.03	f : 0.03	h : 0.01	e : 0.01	2 : 0.01	
= : 0.15	i : 0.15	4 : 0.11	3 : 0.07	c : 0.07	] : 0.07	g : 0.07	b : 0.05	a : 0.05	[ : 0.03	2 : 0.03	f : 0.01	h : 0.01	e : 0.01	
i : 0.21	= : 0.17	g : 0.13	4 : 0.11	3 : 0.07	c : 0.05	2 : 0.05	] : 0.05	e : 0.03	f : 0.01	b : 0.01	h : 0.01	
i : 0.21	= : 0.19	g : 0.15	c : 0.11	4 : 0.07	e : 0.03	2 : 0.03	3 : 0.03	f : 0.01	] : 0.01	b : 0.01	: : 0.01	h : 0.01	d : 0.01	
= : 0.27	g : 0.15	i : 0.15	c : 0.07	d : 0.07	b : 0.05	2 : 0.03	e : 0.03	3 : 0.03	] : 0.01	f : 0.01	> : 0.01	h : 0.01	
= : 0.23	i : 0.15	g : 0.13	c : 0.09	d : 0.09	b : 0.05	2 : 0.03	e : 0.03	3 : 0.03	] : 0.01	> : 0.01	5 : 0.01	4 : 0.01	h : 0.01	
= : 0.21	i : 0.15	g : 0.13	d : 0.09	3 : 0.07	c : 0.07	] : 0.05	e : 0.03	4 : 0.03	f : 0.01	> : 0.01	5 : 0.01	b : 0.01	h : 0.01	
= : 0.17	i : 0.11	3 : 0.09	g : 0.09	2 : 0.09	c : 0.07	d : 0.07	4 : 0.05	a : 0.03	] : 0.03	f : 0.01	> : 0.01	5 : 0.01	b : 0.01	e : 0.01	h : 0.01	
= : 0.17	2 : 0.15	g : 0.11	3 : 0.09	i : 0.09	c : 0.05	4 : 0.05	d : 0.03	b : 0.03	f : 0.01	> : 0.01	] : 0.01	5 : 0.01	e : 0.01	[ : 0.01	h : 0.01	a : 0.01	
= : 0.19	c : 0.13	] : 0.09	g : 0.07	i : 0.07	2 : 0.05	b : 0.05	3 : 0.05	f : 0.03	e : 0.03	d : 0.03	4 : 0.03	> : 0.01	5 : 0.01	: : 0.01	h : 0.01	
= : 0.19	c : 0.15	b : 0.13	i : 0.09	g : 0.05	d : 0.05	h : 0.03	f : 0.03	e : 0.03	3 : 0.03	a : 0.03	> : 0.01	] : 0.01	B : 0.01	: : 0.01	4 : 0.01	
= : 0.17	c : 0.15	b : 0.11	] : 0.09	d : 0.07	g : 0.05	f : 0.05	i : 0.03	e : 0.03	3 : 0.03	h : 0.01	4 : 0.01	> : 0.01	[ : 0.01	B : 0.01	: : 0.01	2 : 0.01	

#score	825.436441543606
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_UTR_m3_run2.txt

#BEAR
e"""eeeeeqqqqqqqqeeeee]ee	chr11:118916032-118916281(-)$1	249	156	181	15.0680
eee[ccc[aqqqqqqqqa]ccc]ee	chr6:160526517-160526761(+)$1	244	216	241	15.8160
dddd[ddddqqqqqqqqdddddddd	chr7:128410569-128410830(+)$1	261	134	159	15.2496
========rrrrrrrrr========	chr16:89980256-89980525(+)$1	269	113	138	10.1703
ccc####bbqqqqqqqqbb22ccc]	chr5:177022501-177022735(+)$1	234	185	210	15.0176
::gggggggqqqqqqqqggggggg:	chrX:70800016-70800269(+)$1	253	145	170	13.4278
=========qqqqqqqq========	chr10:1094580-1094878(-)$1	298	218	243	16.7691
eeeffffffqqqqqqqqffffff22	chr2:187543750-187544013(+)$1	263	226	251	14.4580
hhhh[ddddqqqqqqqqdddd]hhh	chr19:1585189-1585489(-)$1	300	179	204	14.8097
dddd[ddddqqqqqqqqdddd]ddd	chr3:128840659-128840926(-)$1	267	2	27	15.5339
adddd[cccqqqqqqqqccc]dddd	chr5:180236976-180237256(-)$1	280	108	133	15.6827
cccffffffqqqqqqqqffffffdd	chr22:40719628-40719887(+)$1	259	191	216	14.9304
======[bbqqqqqqqqbb======	chr8:101963104-101963391(-)$1	287	90	115	16.1395
ffff"""bbqqqqqqqqbb333fff	chr7:138711024-138711345(-)$1	321	78	103	15.0642
]accc[cccqqqqqqqqccc]ccc:	chr19:2425551-2425807(-)$1	256	55	80	15.1255
[ccc!!cccqqqqqqqqcccccc]f	chr7:766211-766486(-)$1	275	183	208	16.4808
##gggggggqqqqqqqqggggggg2	chr11:8969331-8969589(-)$1	258	177	202	16.0548
[ccceeeeeqqqqqqqqeeeee]cc	chr2:135207298-135207545(+)$1	247	164	189	15.3913
eee"""cccqqqqqqqqccc333ee	chr5:172379353-172379605(+)$1	252	132	157	16.4782
eeeee[cccqqqqqqqqccc]eeee	chr9:33111609-33111867(-)$1	258	83	108	15.9116
$$a[ccc[aqqqqqqqqa]ccc]ac	chr5:171710805-171711097(-)$1	292	234	259	15.5613
d[gggggggqqqqqqqqggggggg]	chr17:46131911-46132181(+)$1	270	53	78	16.1516
[dddd[cccqqqqqqqqccc333dd	chr7:100781881-100782132(+)$1	251	117	142	16.2761
"""ffffffqqqqqqqqffffff33	chr16:848551-848832(+)$1	281	59	84	15.0080
#ccc[ddddqqqqqqqqdddd]ccc	chr11:60658338-60658662(-)$1	324	152	177	16.1257
!!a[eeeeeqqqqqqqqeeeee]a]	chr19:34287639-34287915(+)$1	276	21	46	15.4968
:ccc!!cccqqqqqqqqccc22ccc	chr5:176873510-176873791(-)$1	281	189	214	15.5728
dddd[bb[aqqqqqqqqabb]dddd	chr19:14529748-14530099(-)$1	351	9	34	14.6116
[dddd!!bbqqqqqqqqbbdddd]d	chr2:11484588-11484846(-)$1	258	146	171	15.0076
ffff[ddddqqqqqqqqdddd]fff	chr2:676522-676791(-)$1	269	96	121	15.3483
%%gggggggqqqqqqqqggggggge	chr19:41770802-41771094(+)$1	292	208	233	15.0081
[bb!!ddddqqqqqqqqdddd22bb	chr2:128951262-128951506(+)$1	244	60	85	14.7561
cccffffffqqqqqqqqffffffDD	chr17:2593118-2593422(-)$1	304	21	46	13.0473
eeee!!cccqqqqqqqqccc22eee	chr12:54679567-54679844(+)$1	277	210	235	16.0889
iiiiiiiiiqqqqqqqqiiiiiiii	chr16:30935318-30935548(+)$1	230	20	45	16.2690
%ffffff[aqqqqqqqqa]ffffff	chr6:17611464-17611731(+)$1	267	47	72	14.3303
eecccddddqqqqqqqqdddd22cc	chr1:167511076-167511361(-)$1	285	190	215	15.3308
ccc!!ddddqqqqqqqqddddcccd	chr2:20401577-20401876(-)$1	299	36	61	15.8874
iiiiiiiiiqqqqqqqqiiiiiiii	chr19:48885791-48886070(-)$1	279	224	249	16.2690
eeee[ddddqqqqqqqqddddeeee	chr15:69072029-69072318(-)$1	289	201	226	15.4953
:a[ffffffqqqqqqqqffffff]a	chr2:242707323-242707603(+)$1	280	126	151	14.0901
[a[a[ddddqqqqqqqqdddd]a]a	chr5:175308572-175308856(+)$1	284	25	50	15.9738
iiiiiiiiiqqqqqqqqiiiiiiii	chr20:60709739-60709997(+)$1	258	178	203	16.2690
fffffa[bbqqqqqqqqbb]a]fff	chr19:41859247-41859565(+)$1	318	173	198	14.6471
dddd!!cccqqqqqqqqccc22ddd	chr3:49572016-49572280(+)$1	264	173	198	15.9216
eee[eeeeeqqqqqqqqeeeee]ee	chr8:71314107-71314320(-)$1	213	154	179	15.1752
bbgggggggqqqqqqqqggggggg]	chr2:153574332-153574631(+)$1	299	185	210	15.7090
eeeee[a[aqqqqqqqqaaeeeee2	chr21:46270985-46271217(-)$1	232	97	122	15.2783
ddd!!ddddqqqqqqqqdddddddd	chr16:56395947-56396213(-)$1	266	237	262	15.4196
gggggggbbqqqqqqqqbb]ggggg	chr20:61584225-61584516(+)$1	291	172	197	15.5947
a[dddd[bbqqqqqqqqbb]dddd]	chr17:73315797-73316034(-)$1	237	131	156	14.8358

#otherMatches

#Seq PSSM
UACCUCUGUGGUUAAAAAUGGAAAC	chr11:118916032-118916281(-)$1	249	156	181	15.0680
GUGCGUGCGAGCACACACACACAUA	chr6:160526517-160526761(+)$1	244	216	241	15.8160
GAGCUAAAGAAACCACCCUUUGUUC	chr7:128410569-128410830(+)$1	261	134	159	15.2496
cgcauguggugugggugcacgugug	chr16:89980256-89980525(+)$1	269	113	138	10.1703
AUCACAGUGUUACUGAUCAGGGAUG	chr5:177022501-177022735(+)$1	234	185	210	15.0176
AAAAGUUUGCAACAAAACAAAUUUA	chrX:70800016-70800269(+)$1	253	145	170	13.4278
UGGUCUCCCGAACUGGAGGGAGGCC	chr10:1094580-1094878(-)$1	298	218	243	16.7691
GCAAAAGUGUUAGAAUUUGCUUUUG	chr2:187543750-187544013(+)$1	263	226	251	14.4580
ugaagcuggggcugggacuggguuu	chr19:1585189-1585489(-)$1	300	179	204	14.8097
guucgggcugagggcggagucgggg	chr3:128840659-128840926(-)$1	267	2	27	15.5339
GGGUCGAGGGGGUGGGGCCUGGGCC	chr5:180236976-180237256(-)$1	280	108	133	15.6827
UUGGCUGGUUGAUAAAUACCAGUGU	chr22:40719628-40719887(+)$1	259	191	216	14.9304
UUUUGCUCCUUGUGAACGGGCGGGG	chr8:101963104-101963391(-)$1	287	90	115	16.1395
GUCCUUUUGGAAGAAUACAUUUGGG	chr7:138711024-138711345(-)$1	321	78	103	15.0642
GUGGUCCCGGAGUGGAACGGUGCCU	chr19:2425551-2425807(-)$1	256	55	80	15.1255
AGAUUACGGCAGCACUUCCGGUCCG	chr7:766211-766486(-)$1	275	183	208	16.4808
GUAAAUAGACCUUACCUUCUAUUUU	chr11:8969331-8969589(-)$1	258	177	202	16.0548
CCAAAGUCCAGGGAAGGGGGCUCUU	chr2:135207298-135207545(+)$1	247	164	189	15.3913
GCACAUGAGUUGAAAUUCUUUUAUG	chr5:172379353-172379605(+)$1	252	132	157	16.4782
AAGGCACUCCUACCACUGAGCGCCU	chr9:33111609-33111867(-)$1	258	83	108	15.9116
agugggcgcggaggaaggggccgag	chr5:171710805-171711097(-)$1	292	234	259	15.5613
GGAGGGGGUGGGGAUUGGCUCCCUG	chr17:46131911-46132181(+)$1	270	53	78	16.1516
GUGAGAGAGACAGGCAGCUCGGAUU	chr7:100781881-100782132(+)$1	251	117	142	16.2761
GGGACUCACAGGAUGGAGUGAGUGG	chr16:848551-848832(+)$1	281	59	84	15.0080
ACUCUGGUCUGAGUGGUGGCCUGAG	chr11:60658338-60658662(-)$1	324	152	177	16.1257
aggguggggaggggaggccccggcg	chr19:34287639-34287915(+)$1	276	21	46	15.4968
AGGGGAGGCACACGCCGGCCGACCC	chr5:176873510-176873791(-)$1	281	189	214	15.5728
GGGAGCCAGGUGAGCAGCGGAUCCC	chr19:14529748-14530099(-)$1	351	9	34	14.6116
gcggcgaccauggcagcgggccggc	chr2:11484588-11484846(-)$1	258	146	171	15.0076
GUUCGUCUGACAGAUCCCAGGGGAG	chr2:676522-676791(-)$1	269	96	121	15.3483
GUCGGAAGAACAAGAGGUUUUCCGU	chr19:41770802-41771094(+)$1	292	208	233	15.0081
GACAGUCAGACAUCACCCUGAGAGU	chr2:128951262-128951506(+)$1	244	60	85	14.7561
UCAGGGUUUAGGCCGAAAAACCCGG	chr17:2593118-2593422(-)$1	304	21	46	13.0473
GAUUCGUGACAAUGCCUUUAAAGAU	chr12:54679567-54679844(+)$1	277	210	235	16.0889
CUGGACCCCUGGGCAGUGGGGUCCG	chr16:30935318-30935548(+)$1	230	20	45	16.2690
AUUUCUAGCAAAGGAAGGGUAGAAA	chr6:17611464-17611731(+)$1	267	47	72	14.3303
AUGUGUUCUUUAUUCCUAGAAGCCA	chr1:167511076-167511361(-)$1	285	190	215	15.3308
CUGGAAGCCAAAAUGUAGGCUUAGU	chr2:20401577-20401876(-)$1	299	36	61	15.8874
CAGAAGAAAAUGAAACCUUUCUUUU	chr19:48885791-48886070(-)$1	279	224	249	16.2690
ACUCUCAAAGAGGAUGGUUUGGAGU	chr15:69072029-69072318(-)$1	289	201	226	15.4953
CGGUGGCUCUGAGGGAUGAGCCGGC	chr2:242707323-242707603(+)$1	280	126	151	14.0901
GUGUGCAUGGAUGUGUGCGUGGGGA	chr5:175308572-175308856(+)$1	284	25	50	15.9738
UUCCAGGUUGGGGUUGGAGCCUGGG	chr20:60709739-60709997(+)$1	258	178	203	16.2690
CCCGGCGGCAAAGGGAGGCGGUCUG	chr19:41859247-41859565(+)$1	318	173	198	14.6471
CAUUUUGAGCAUGACUUUUCUUGAU	chr3:49572016-49572280(+)$1	264	173	198	15.9216
GACGUUGUCUUAGACACGACGAAGU	chr8:71314107-71314320(-)$1	213	154	179	15.1752
CGCGCGCCUGGGGAAGGAGGCGUGU	chr2:153574332-153574631(+)$1	299	185	210	15.7090
GCUUCACACGCAACACAGGGAAGUC	chr21:46270985-46271217(-)$1	232	97	122	15.2783
UUGAACAAGAUGUGGGCCUUGCAAG	chr16:56395947-56396213(-)$1	266	237	262	15.4196
GGAAGGAAGUGAGUGCCCUGUCCUU	chr20:61584225-61584516(+)$1	291	172	197	15.5947
UGUAUUUUGUCCAAGUUCACAGUAG	chr17:73315797-73316034(-)$1	237	131	156	14.8358

#DB
(...(((((........))))).))	chr11:118916032-118916281(-)$1	1	156	181	15.0680
(((.(((.(........).))).))	chr6:160526517-160526761(+)$1	1	216	241	15.8160
((((.((((........))))))))	chr7:128410569-128410830(+)$1	1	134	159	15.2496
((((((((.........))))))))	chr16:89980256-89980525(+)$1	1	113	138	10.1703
(((....((........))..))).	chr5:177022501-177022735(+)$1	1	185	210	15.0176
..(((((((........))))))).	chrX:70800016-70800269(+)$1	1	145	170	13.4278
(((((((((........))))))))	chr10:1094580-1094878(-)$1	1	218	243	16.7691
(((((((((........))))))..	chr2:187543750-187544013(+)$1	1	226	251	14.4580
((((.((((........)))).)))	chr19:1585189-1585489(-)$1	1	179	204	14.8097
((((.((((........)))).)))	chr3:128840659-128840926(-)$1	1	2	27	15.5339
(((((.(((........))).))))	chr5:180236976-180237256(-)$1	1	108	133	15.6827
)))((((((........))))))((	chr22:40719628-40719887(+)$1	1	191	216	14.9304
((((((.((........))))))))	chr8:101963104-101963391(-)$1	1	90	115	16.1395
((((...((........))...)))	chr7:138711024-138711345(-)$1	1	78	103	15.0642
.)(((.(((........))).))).	chr19:2425551-2425807(-)$1	1	55	80	15.1255
.(((..(((........)))))).)	chr7:766211-766486(-)$1	1	183	208	16.4808
..(((((((........))))))).	chr11:8969331-8969589(-)$1	1	177	202	16.0548
.((((((((........))))).))	chr2:135207298-135207545(+)$1	1	164	189	15.3913
(((...(((........)))...))	chr5:172379353-172379605(+)$1	1	132	157	16.4782
(((((.(((........))).))))	chr9:33111609-33111867(-)$1	1	83	108	15.9116
..(.(((.(........).))).))	chr5:171710805-171711097(-)$1	1	234	259	15.5613
(.(((((((........))))))).	chr17:46131911-46132181(+)$1	1	53	78	16.1516
.((((.(((........)))...))	chr7:100781881-100782132(+)$1	1	117	142	16.2761
...((((((........))))))..	chr16:848551-848832(+)$1	1	59	84	15.0080
.(((.((((........)))).)))	chr11:60658338-60658662(-)$1	1	152	177	16.1257
..(.(((((........))))).).	chr19:34287639-34287915(+)$1	1	21	46	15.4968
.(((..(((........)))..)))	chr5:176873510-176873791(-)$1	1	189	214	15.5728
((((.((.(........))).))))	chr19:14529748-14530099(-)$1	1	9	34	14.6116
.((((..((........)))))).)	chr2:11484588-11484846(-)$1	1	146	171	15.0076
((((.((((........)))).)))	chr2:676522-676791(-)$1	1	96	121	15.3483
..(((((((........))))))))	chr19:41770802-41771094(+)$1	1	208	233	15.0081
.((..((((........))))..))	chr2:128951262-128951506(+)$1	1	60	85	14.7561
)))((((((........))))))((	chr17:2593118-2593422(-)$1	1	21	46	13.0473
((((..(((........)))..)))	chr12:54679567-54679844(+)$1	1	210	235	16.0889
(((((((((........))))))))	chr16:30935318-30935548(+)$1	1	20	45	16.2690
.((((((.(........).))))))	chr6:17611464-17611731(+)$1	1	47	72	14.3303
(((((((((........))))..))	chr1:167511076-167511361(-)$1	1	190	215	15.3308
(((..((((........))))))))	chr2:20401577-20401876(-)$1	1	36	61	15.8874
(((((((((........))))))))	chr19:48885791-48886070(-)$1	1	224	249	16.2690
((((.((((........))))))))	chr15:69072029-69072318(-)$1	1	201	226	15.4953
.(.((((((........)))))).)	chr2:242707323-242707603(+)$1	1	126	151	14.0901
.(.(.((((........)))).).)	chr5:175308572-175308856(+)$1	1	25	50	15.9738
(((((((((........))))))))	chr20:60709739-60709997(+)$1	1	178	203	16.2690
((((((.((........)).).)))	chr19:41859247-41859565(+)$1	1	173	198	14.6471
((((..(((........)))..)))	chr3:49572016-49572280(+)$1	1	173	198	15.9216
(((.(((((........))))).))	chr8:71314107-71314320(-)$1	1	154	179	15.1752
(((((((((........))))))).	chr2:153574332-153574631(+)$1	1	185	210	15.7090
(((((.(.(........))))))).	chr21:46270985-46271217(-)$1	1	97	122	15.2783
(((..((((........))))))))	chr16:56395947-56396213(-)$1	1	237	262	15.4196
(((((((((........)).)))))	chr20:61584225-61584516(+)$1	1	172	197	15.5947
(.((((.((........)).)))).	chr17:73315797-73316034(-)$1	1	131	156	14.8358

#PSSM
e : 0.19	d : 0.11	[ : 0.11	c : 0.07	= : 0.05	: : 0.05	f : 0.05	i : 0.05	a : 0.03	# : 0.03	% : 0.03	h : 0.01	] : 0.01	$ : 0.01	" : 0.01	! : 0.01	b : 0.01	g : 0.01	
e : 0.17	d : 0.15	c : 0.15	f : 0.07	= : 0.05	a : 0.05	i : 0.05	" : 0.03	[ : 0.03	b : 0.03	: : 0.01	h : 0.01	# : 0.01	$ : 0.01	! : 0.01	% : 0.01	g : 0.01	
c : 0.19	d : 0.17	e : 0.15	g : 0.11	f : 0.07	= : 0.05	i : 0.05	" : 0.03	a : 0.03	[ : 0.03	h : 0.01	b : 0.01	
f : 0.17	d : 0.15	g : 0.11	c : 0.11	[ : 0.07	e : 0.07	= : 0.05	! : 0.05	i : 0.05	" : 0.03	# : 0.01	h : 0.01	a : 0.01	
[ : 0.15	f : 0.13	! : 0.13	e : 0.11	g : 0.11	c : 0.07	d : 0.07	= : 0.05	i : 0.05	" : 0.03	# : 0.01	
d : 0.23	g : 0.11	f : 0.11	[ : 0.09	! : 0.09	e : 0.07	= : 0.05	i : 0.05	c : 0.03	" : 0.03	# : 0.01	b : 0.01	a : 0.01	
c : 0.21	d : 0.21	g : 0.11	f : 0.11	e : 0.07	[ : 0.05	i : 0.05	= : 0.03	# : 0.01	" : 0.01	b : 0.01	! : 0.01	a : 0.01	
d : 0.21	c : 0.17	b : 0.13	[ : 0.09	g : 0.09	f : 0.09	e : 0.07	i : 0.05	= : 0.03	
d : 0.21	c : 0.17	b : 0.13	a : 0.09	g : 0.09	f : 0.09	e : 0.07	i : 0.05	r : 0.01	= : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
q : 0.98	r : 0.01	
d : 0.21	c : 0.17	b : 0.13	a : 0.09	g : 0.09	f : 0.09	e : 0.07	i : 0.05	= : 0.03	
d : 0.21	c : 0.17	b : 0.15	g : 0.09	f : 0.09	e : 0.07	] : 0.05	i : 0.05	= : 0.03	a : 0.01	
d : 0.23	c : 0.21	f : 0.11	e : 0.09	g : 0.09	= : 0.05	i : 0.05	] : 0.05	2 : 0.01	3 : 0.01	b : 0.01	
d : 0.25	g : 0.11	f : 0.11	e : 0.09	2 : 0.07	] : 0.07	c : 0.05	= : 0.05	3 : 0.05	i : 0.05	a : 0.01	
e : 0.13	c : 0.11	d : 0.11	g : 0.11	f : 0.11	] : 0.11	2 : 0.09	= : 0.05	3 : 0.05	i : 0.05	
f : 0.17	d : 0.15	] : 0.11	c : 0.11	g : 0.11	e : 0.07	= : 0.05	i : 0.05	3 : 0.03	2 : 0.03	h : 0.01	a : 0.01	
d : 0.17	e : 0.15	c : 0.13	g : 0.11	f : 0.07	] : 0.07	= : 0.05	i : 0.05	a : 0.03	2 : 0.01	h : 0.01	3 : 0.01	b : 0.01	D : 0.01	
d : 0.19	e : 0.15	] : 0.09	f : 0.09	c : 0.09	= : 0.05	2 : 0.05	i : 0.05	: : 0.03	a : 0.03	h : 0.01	3 : 0.01	b : 0.01	D : 0.01	g : 0.01	

#score	780.1380406092418
#seq	51
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_UTR_m3_run2.txt

#BEAR
dddgggggggmmmmggggggg22dd	chr12:110971586-110971881(-)$1	295	157	182	9.6503
dd[ccc!!ccclllccc]ccc]ddd	chr19:50028171-50028460(+)$1	289	101	126	10.3582
ffffff[cccmmmmccc]ffffff3	chr20:25433751-25434037(-)$1	286	81	106	11.5306
ffffff[cccmmmmccc]ffffff:	chr11:62382889-62383217(-)$1	328	114	139	10.6193
iiiiiiicccmmmmcccbb[eeeee	chr17:79976663-79976917(-)$1	254	87	112	10.7406
!!bb####bbmmmmbb4444bb22c	chr1:11721489-11721729(+)$1	240	189	214	9.8672
dddgggggggmmmmggggggg22dd	chrX:153031551-153031797(+)$1	246	202	227	9.6503
[ffffffcccmmmmccc333fffff	chr19:10464428-10464685(-)$1	257	184	209	11.7368
dd!!bb[cccmmmmcccbb22dddd	chr17:42268471-42268731(+)$1	260	100	125	11.0900
gggggg[ccclllccc]gggggggi	chr17:80207640-80207872(-)$1	232	117	142	9.9245
eeeee!!ccclllccc22eeeee]c	chr8:144921637-144922005(-)$1	368	185	210	9.1912
ddd[bb[cccmmmmccc333bb]dd	chr19:49606273-49606522(+)$1	249	161	186	12.2949
b[a[bb[cccmmmmcccbb]a]bb]	chr3:184033258-184033542(+)$1	284	50	75	10.8799
[ffffffcccmmmmccc333fffff	chr19:10464218-10464570(-)$1	352	69	94	11.7368
gggggg!!bbmmmmbb4444ggggg	chr5:176980292-176980564(-)$1	272	71	96	11.0085
======[cccmmmmccc]=======	chr10:75578193-75578450(-)$1	257	171	196	13.2663
c####ddddammmma]dddd22ccc	chr17:80192784-80193046(+)$1	262	80	105	8.5931
ccccc"""ccclllccc]ccc]ccc	chr19:54378395-54378649(+)$1	254	221	246	10.6613
fiiiiiiiiimmmmiiiiiiiii44	chr8:145168988-145169317(+)$1	329	62	87	10.2852
Fddddbbcccmmmmccc]bb]dddd	chr7:75024530-75024818(+)$1	288	259	284	10.0858
hhhhh!!cccmmmmccchhhhhhhh	chr3:194343708-194343993(-)$1	285	243	268	10.1221
!ccc"""cccmmmmccc333ccc33	chr8:144344011-144344255(+)$1	244	133	158	13.7560
[ccc"""cccmmmmccc]ccc]a]d	chr12:7024552-7024777(+)$1	225	127	152	13.3455
!ccc[cccooooooccc]ccceeee	chr22:25005474-25005716(+)$1	242	125	150	9.3012
[ccc####bbmmmmbb4444ccc]b	chr19:2096592-2096869(+)$1	277	64	89	10.9813
eee!!bbcccmmmmccc]bb22eee	chr20:4680562-4680817(+)$1	255	114	139	11.3120
fffff!!cccmmmmccc]ffffff:	chr22:40804932-40805212(+)$1	280	157	182	10.9289
ddddaa[cccmmmmccc]a]a]ddd	chr9:139743746-139744009(+)$1	263	230	255	12.5230
[eeeee!!bbmmmmbb333eeeee]	chr7:1584892-1585148(-)$1	256	215	240	10.0889
eecccccc[ammmma]ccc]ccc]e	chr17:7311371-7311621(+)$1	250	200	225	10.7615
!ccc"""cccmmmmccc333ccc22	chr8:141679948-141680175(-)$1	227	45	70	13.3399
!bbbb!!cccmmmmccc333bb]bb	chr10:74035403-74035651(+)$1	248	183	208	11.5900
dddd"""ccclllccc22dddd]ee	chr22:50945405-50945665(-)$1	260	166	191	9.3866
c!!ddddcccmmmmccc]dddd]cc	chr11:68660123-68660428(-)$1	305	105	130	10.8607
####ccccccmmmmccc]ccceeee	chr19:18547563-18547883(-)$1	320	82	107	11.8842
cc"""eeeeemmmmeeeee]cccii	chr11:65325313-65325590(-)$1	277	138	163	8.6362
ddd[bb[cccmmmmccc]bbdddd:	chr12:6833456-6833730(+)$1	274	32	57	10.5673
dccc[a!!bbmmmmbb22a]ccc]d	chr20:62272068-62272362(-)$1	294	242	267	10.6752
!bb[a!!cccmmmmccc]abb22dd	chr19:46285643-46285912(-)$1	269	186	211	12.0215
ff[ccc[ccclllcccccc22ffff	chr9:131583216-131583504(-)$1	288	174	199	9.6062
ee[bb[a!!ammmma]a]bb]eeee	chr8:22423301-22423666(+)$1	365	126	151	10.0762
ee[ccc[bbammmma]bb22ccc]e	chr20:33432444-33432723(-)$1	279	250	275	9.7744
gggggggcccmmmmccc22gggggg	chr19:13260886-13261197(-)$1	311	92	117	12.0476
hhh[bb[cccmmmmccc]bbhhhhh	chr19:35530866-35531125(+)$1	259	85	110	11.0115
gg!!ffffffmmmmffffff]gggg	chr15:73852965-73853241(-)$1	276	247	272	9.0496
cc!!dddd[ammmma]dddd22ccc	chr20:62271934-62272200(-)$1	266	151	176	8.6713
eeegggggggmmmmggggggg22ee	chr6:116573613-116573883(-)$1	270	219	244	9.7989
eeeee!!cccmmmmccc4444eeee	chr17:38189714-38189955(-)$1	241	182	207	12.3949
gggggg[cccooooooccc]ggggg	chr16:1826158-1826425(+)$1	267	173	198	9.3599
dddd"""cccmmmmccc4444dddd	chr9:131583445-131583712(-)$1	267	183	208	12.4652
a[bb"""ccclllccc4444bb]a]	chr19:917309-917593(+)$1	284	92	117	10.0152
bb"""cccccclllccc]ccc]bb]	chr1:44820607-44820861(-)$1	254	115	140	9.3468
eeea[a[cccmmmmccc]a]a333e	chr20:33872316-33872617(-)$1	301	95	120	13.1178
fff]ccccccmmmmccc========	chr19:41770781-41771086(+)$1	305	19	44	11.4516

#otherMatches

#Seq PSSM
GAUGGGAGAGCGUCCUCUCCUCUAU	chr12:110971586-110971881(-)$1	295	157	182	9.6503
GGCCAGUCCUCCCUGAGUCUGACCA	chr19:50028171-50028460(+)$1	289	101	126	10.3582
GCAGAUAGUUAAUGAAUGGUCUGCC	chr20:25433751-25434037(-)$1	286	81	106	11.5306
CAGGAUGUGGUUUUCCAAGUCCUGA	chr11:62382889-62383217(-)$1	328	114	139	10.6193
CCCUGGGACAAUAGUGUGCAUGCCA	chr17:79976663-79976917(-)$1	254	87	112	10.7406
ACCAUUCUACCUGUGUUCUUUGACC	chr1:11721489-11721729(+)$1	240	189	214	9.8672
CUUGCAGCCGGCCCUGGCUGCCCAA	chrX:153031551-153031797(+)$1	246	202	227	9.6503
CAGCUCCCUCAAGUGAGAAUGGGGU	chr19:10464428-10464685(-)$1	257	184	209	11.7368
UGCAUGUCUGCCCCCAGCACCCAGG	chr17:42268471-42268731(+)$1	260	100	125	11.0900
UUGGAAGUUUAAGGAAGUUCUGAGC	chr17:80207640-80207872(-)$1	232	117	142	9.9245
CCUCGGACAGGGGCUGGGCGAGGAU	chr8:144921637-144922005(-)$1	368	185	210	9.1912
GGGCGGACAGGUUUCUGAGGCCUCC	chr19:49606273-49606522(+)$1	249	161	186	12.2949
CGUGGACUUGUUCUUAAUCGAGGGG	chr3:184033258-184033542(+)$1	284	50	75	10.8799
CAGCUCCCUCAAGUGAGAAUGGGGU	chr19:10464218-10464570(-)$1	352	69	94	11.7368
CCUGCCAAAGUUCACUGAGAGGCGG	chr5:176980292-176980564(-)$1	272	71	96	11.0085
CCUUUUGCUCCUGUGAGGAAAGGGU	chr10:75578193-75578450(-)$1	257	171	196	13.2663
UGCAGCUCCCUGGUGAGGAGAGGAC	chr17:80192784-80193046(+)$1	262	80	105	8.5931
GGCGGGAGGCUUUAAGCACCGACCC	chr19:54378395-54378649(+)$1	254	221	246	10.6613
AUCUUCAGCCUGCAGGUUGGAGGGA	chr8:145168988-145169317(+)$1	329	62	87	10.2852
GUGUGGCCCGUAAUCGGAGCGCACA	chr7:75024530-75024818(+)$1	288	259	284	10.0858
UGAGGACGGCGGGAGCCUCUCGGGG	chr3:194343708-194343993(-)$1	285	243	268	10.1221
cgcacccgcaccccugcaccugcca	chr8:144344011-144344255(+)$1	244	133	158	13.7560
CGGGAACCACUGUCGUGCCCCUCCC	chr12:7024552-7024777(+)$1	225	127	152	13.3455
UGGGGCUCAUUGGAGGGGCUUGCUG	chr22:25005474-25005716(+)$1	242	125	150	9.3012
GGCCAUUGGCGCAUGCGUAGGGCGC	chr19:2096592-2096869(+)$1	277	64	89	10.9813
GGGAGGCGGUAUCCACCUGCAGCCC	chr20:4680562-4680817(+)$1	255	114	139	11.3120
UCCUUACAGGGAACCCUAAAGGACA	chr22:40804932-40805212(+)$1	280	157	182	10.9289
GCUCCGGGGCUCCGGCUGCAGAGAG	chr9:139743746-139744009(+)$1	263	230	255	12.5230
CCGGCUGCCUGAUAAGAUAGGCUGA	chr7:1584892-1585148(-)$1	256	215	240	10.0889
AGCAUGUGGCUCCUGGCGCUGUGUC	chr17:7311371-7311621(+)$1	250	200	225	10.7615
UGCUGCUGGAUUGUUCCUCGGGCUU	chr8:141679948-141680175(-)$1	227	45	70	13.3399
AUCGUGUACUGCAGAGUUGAGCUGG	chr10:74035403-74035651(+)$1	248	183	208	11.5900
UGUCCAGGGCCUGGCCAUGACAUGC	chr22:50945405-50945665(-)$1	260	166	191	9.3866
ACGGUGCUGGUUGCCCAGGCGCAUG	chr11:68660123-68660428(-)$1	305	105	130	10.8607
AACGACCUCGUGUUCGAUGGUGGGC	chr19:18547563-18547883(-)$1	320	82	107	11.8842
cccccgggUCCUGCGGCCCCGGAUG	chr11:65325313-65325590(-)$1	277	138	163	8.6362
UCGUCAGGGUGGACACCAUGCGACA	chr12:6833456-6833730(+)$1	274	32	57	10.5673
CUCUGAGACCACCUGGCGUGAGGUG	chr20:62272068-62272362(-)$1	294	242	267	10.6752
GGGACAGGCAGACAUGCAGCCAGGG	chr19:46285643-46285912(-)$1	269	186	211	12.0215
AUGGUCAGGGGUACCCGACAGGUCU	chr9:131583216-131583504(-)$1	288	174	199	9.6062
cgggcgggagggaacguggcgcggc	chr8:22423301-22423666(+)$1	365	126	151	10.0762
GAGAGGAGACCUCGGCUCACCCUGU	chr20:33432444-33432723(-)$1	279	250	275	9.7744
GCUCUCGAUGGUGGCGUGACGGGGG	chr19:13260886-13261197(-)$1	311	92	117	12.0476
UCUGCUGCCUGUUUGGGGAGGGGGG	chr19:35530866-35531125(+)$1	259	85	110	11.0115
uacaguauauaaauauauauauaua	chr15:73852965-73853241(-)$1	276	247	272	9.0496
AGUCUGCUGGGGAGUGGGCAUUCUC	chr20:62271934-62272200(-)$1	266	151	176	8.6713
AUGAUACUAUAGAUAUAGUGUACCA	chr6:116573613-116573883(-)$1	270	219	244	9.7989
CAGGGCCAGGUGCUCCUUCUCUCCU	chr17:38189714-38189955(-)$1	241	182	207	12.3949
UCAGCCUGGGUGGGUUCUCUGGCUG	chr16:1826158-1826425(+)$1	267	173	198	9.3599
CCGCAGACCUGCAGGGGGAAGGCGG	chr9:131583445-131583712(-)$1	267	183	208	12.4652
UUCCACAGGCGCAGCCCCCGGGCGG	chr19:917309-917593(+)$1	284	92	117	10.0152
GCACCUGGAGGGAGCCUGCCGCGCU	chr1:44820607-44820861(-)$1	254	115	140	9.3468
UGGUGUGAGGGGAACCUGGGAGGGU	chr20:33872316-33872617(-)$1	301	95	120	13.1178
CCUGAGGAUCGGGGGAUCCCGCUAC	chr19:41770781-41771086(+)$1	305	19	44	11.4516

#DB
((((((((((....)))))))..))	chr12:110971586-110971881(-)$1	1	157	182	9.6503
((.(((..(((...))).))).)))	chr19:50028171-50028460(+)$1	1	101	126	10.3582
((((((.(((....))).)))))).	chr20:25433751-25434037(-)$1	1	81	106	11.5306
((((((.(((....))).)))))).	chr11:62382889-62383217(-)$1	1	114	139	10.6193
)))))))(((....)))((.(((((	chr17:79976663-79976917(-)$1	1	87	112	10.7406
..((....((....))....))..)	chr1:11721489-11721729(+)$1	1	189	214	9.8672
((((((((((....)))))))..))	chrX:153031551-153031797(+)$1	1	202	227	9.6503
.(((((((((....)))...)))))	chr19:10464428-10464685(-)$1	1	184	209	11.7368
((..((.(((....)))))..))))	chr17:42268471-42268731(+)$1	1	100	125	11.0900
((((((.(((...))).)))))))(	chr17:80207640-80207872(-)$1	1	117	142	9.9245
(((((..(((...)))..))))).)	chr8:144921637-144922005(-)$1	1	185	210	9.1912
(((.((.(((....)))...)).))	chr19:49606273-49606522(+)$1	1	161	186	12.2949
(.(.((.(((....))))).).)).	chr3:184033258-184033542(+)$1	1	50	75	10.8799
.(((((((((....)))...)))))	chr19:10464218-10464570(-)$1	1	69	94	11.7368
((((((..((....))....)))))	chr5:176980292-176980564(-)$1	1	71	96	11.0085
((((((.(((....))).)))))))	chr10:75578193-75578450(-)$1	1	171	196	13.2663
(....(((((....).))))..)))	chr17:80192784-80193046(+)$1	1	80	105	8.5931
(((((...(((...))).))).)))	chr19:54378395-54378649(+)$1	1	221	246	10.6613
((((((((((....)))))))))..	chr8:145168988-145169317(+)$1	1	62	87	10.2852
)(((((((((....))).)).))))	chr7:75024530-75024818(+)$1	1	259	284	10.0858
(((((..(((....)))))))))))	chr3:194343708-194343993(-)$1	1	243	268	10.1221
.(((...(((....)))...)))..	chr8:144344011-144344255(+)$1	1	133	158	13.7560
.(((...(((....))).))).).)	chr12:7024552-7024777(+)$1	1	127	152	13.3455
.(((.(((......))).)))))))	chr22:25005474-25005716(+)$1	1	125	150	9.3012
.(((....((....))....))).)	chr19:2096592-2096869(+)$1	1	64	89	10.9813
(((..(((((....))).))..)))	chr20:4680562-4680817(+)$1	1	114	139	11.3120
(((((..(((....))).)))))).	chr22:40804932-40805212(+)$1	1	157	182	10.9289
((((((.(((....))).).).)))	chr9:139743746-139744009(+)$1	1	230	255	12.5230
.(((((..((....))...))))).	chr7:1584892-1585148(-)$1	1	215	240	10.0889
((((((((.(....).))).))).)	chr17:7311371-7311621(+)$1	1	200	225	10.7615
.(((...(((....)))...)))..	chr8:141679948-141680175(-)$1	1	45	70	13.3399
.((((..(((....)))...)).))	chr10:74035403-74035651(+)$1	1	183	208	11.5900
((((...(((...)))..)))).))	chr22:50945405-50945665(-)$1	1	166	191	9.3866
(..(((((((....))).)))).))	chr11:68660123-68660428(-)$1	1	105	130	10.8607
....((((((....))).)))))))	chr19:18547563-18547883(-)$1	1	82	107	11.8842
((...(((((....))))).)))))	chr11:65325313-65325590(-)$1	1	138	163	8.6362
(((.((.(((....))).)))))).	chr12:6833456-6833730(+)$1	1	32	57	10.5673
((((.(..((....))..).))).)	chr20:62272068-62272362(-)$1	1	242	267	10.6752
.((.(..(((....))).)))..))	chr19:46285643-46285912(-)$1	1	186	211	12.0215
((.(((.(((...))))))..))))	chr9:131583216-131583504(-)$1	1	174	199	9.6062
((.((.(..(....).).)).))))	chr8:22423301-22423666(+)$1	1	126	151	10.0762
((.(((.(((....).))..))).)	chr20:33432444-33432723(-)$1	1	250	275	9.7744
((((((((((....)))..))))))	chr19:13260886-13261197(-)$1	1	92	117	12.0476
(((.((.(((....))).)))))))	chr19:35530866-35531125(+)$1	1	85	110	11.0115
((..((((((....)))))).))))	chr15:73852965-73853241(-)$1	1	247	272	9.0496
((..((((.(....).))))..)))	chr20:62271934-62272200(-)$1	1	151	176	8.6713
((((((((((....)))))))..))	chr6:116573613-116573883(-)$1	1	219	244	9.7989
(((((..(((....)))....))))	chr17:38189714-38189955(-)$1	1	182	207	12.3949
((((((.(((......))).)))))	chr16:1826158-1826425(+)$1	1	173	198	9.3599
((((...(((....)))....))))	chr9:131583445-131583712(-)$1	1	183	208	12.4652
(.((...(((...)))....)).).	chr19:917309-917593(+)$1	1	92	117	10.0152
((...((((((...))).))).)).	chr1:44820607-44820861(-)$1	1	115	140	9.3468
((((.(.(((....))).).)...)	chr20:33872316-33872617(-)$1	1	95	120	13.1178
))).)))(((....)))((((((((	chr19:41770781-41771086(+)$1	1	19	44	11.4516

#PSSM
d : 0.18	e : 0.14	f : 0.11	! : 0.11	[ : 0.09	g : 0.09	c : 0.09	b : 0.03	h : 0.03	i : 0.01	= : 0.01	F : 0.01	# : 0.01	a : 0.01	
d : 0.18	e : 0.16	c : 0.16	f : 0.12	g : 0.09	b : 0.05	i : 0.03	! : 0.03	[ : 0.03	# : 0.03	h : 0.03	= : 0.01	
d : 0.14	c : 0.14	f : 0.11	e : 0.11	[ : 0.07	b : 0.07	! : 0.07	g : 0.07	i : 0.03	# : 0.03	h : 0.03	" : 0.03	a : 0.01	= : 0.01	
c : 0.20	g : 0.12	f : 0.09	[ : 0.09	d : 0.09	b : 0.07	! : 0.07	e : 0.05	i : 0.03	# : 0.03	" : 0.03	= : 0.01	h : 0.01	a : 0.01	] : 0.01	
" : 0.14	g : 0.12	c : 0.12	b : 0.12	f : 0.11	# : 0.05	e : 0.05	d : 0.05	[ : 0.05	i : 0.03	a : 0.03	= : 0.01	h : 0.01	! : 0.01	
c : 0.14	g : 0.12	b : 0.12	" : 0.12	! : 0.11	f : 0.09	d : 0.05	a : 0.05	i : 0.03	# : 0.03	e : 0.03	= : 0.01	[ : 0.01	
[ : 0.25	! : 0.18	" : 0.12	c : 0.09	g : 0.07	f : 0.05	d : 0.05	i : 0.03	# : 0.03	b : 0.03	e : 0.01	a : 0.01	
c : 0.68	! : 0.09	g : 0.05	# : 0.03	d : 0.03	" : 0.01	i : 0.01	e : 0.01	b : 0.01	f : 0.01	
c : 0.68	b : 0.11	g : 0.05	[ : 0.03	d : 0.01	i : 0.01	o : 0.01	e : 0.01	! : 0.01	f : 0.01	
c : 0.68	b : 0.09	a : 0.09	g : 0.05	i : 0.01	o : 0.01	e : 0.01	f : 0.01	
m : 0.81	l : 0.09	c : 0.05	o : 0.03	
m : 0.81	l : 0.14	o : 0.03	
m : 0.81	l : 0.14	o : 0.03	
m : 0.81	c : 0.09	l : 0.05	o : 0.03	
c : 0.68	b : 0.09	a : 0.09	g : 0.05	i : 0.01	e : 0.01	f : 0.01	o : 0.01	
c : 0.68	b : 0.09	] : 0.09	g : 0.05	i : 0.01	e : 0.01	f : 0.01	o : 0.01	
c : 0.64	4 : 0.07	g : 0.05	2 : 0.05	d : 0.03	] : 0.01	i : 0.01	3 : 0.01	e : 0.01	a : 0.01	b : 0.01	f : 0.01	
] : 0.35	3 : 0.12	4 : 0.11	g : 0.07	b : 0.07	2 : 0.07	c : 0.05	d : 0.03	i : 0.01	h : 0.01	e : 0.01	f : 0.01	= : 0.01	
c : 0.16	b : 0.14	3 : 0.12	4 : 0.11	g : 0.07	f : 0.07	d : 0.07	a : 0.07	e : 0.03	= : 0.03	2 : 0.03	i : 0.01	h : 0.01	
] : 0.12	c : 0.11	4 : 0.11	3 : 0.11	b : 0.11	g : 0.09	f : 0.07	d : 0.07	2 : 0.05	e : 0.03	= : 0.03	[ : 0.01	i : 0.01	h : 0.01	
c : 0.24	g : 0.12	f : 0.09	b : 0.09	2 : 0.09	e : 0.05	a : 0.05	] : 0.05	d : 0.05	= : 0.03	h : 0.03	4 : 0.03	i : 0.01	
2 : 0.12	e : 0.12	c : 0.12	] : 0.11	f : 0.11	d : 0.11	g : 0.09	b : 0.07	= : 0.03	h : 0.03	i : 0.01	3 : 0.01	
c : 0.18	e : 0.14	d : 0.11	f : 0.11	2 : 0.09	g : 0.09	] : 0.09	b : 0.03	= : 0.03	h : 0.03	i : 0.01	a : 0.01	3 : 0.01	
d : 0.18	e : 0.16	f : 0.11	] : 0.11	g : 0.09	c : 0.07	b : 0.05	2 : 0.03	= : 0.03	h : 0.03	3 : 0.03	4 : 0.01	i : 0.01	a : 0.01	
d : 0.20	e : 0.20	c : 0.11	] : 0.07	g : 0.07	: : 0.05	f : 0.05	3 : 0.03	i : 0.03	= : 0.03	h : 0.03	b : 0.03	4 : 0.01	2 : 0.01	

#score	583.4429690794481
#seq	54
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF567MGK_YBX3_UTR_m2_run2.txt

#BEAR
eee[a[ddddrrrrrrrrrdddd333a]e	chr2:27293386-27293598(-)$1	212	168	197	11.9282
[a[ccc[cccqqqqqqqqccc]ccc]agg	chr17:1324324-1324595(-)$1	271	27	56	16.2438
=====!!cccqqqqqqqqccc]=======	chr8:90801461-90801717(+)$1	256	84	113	16.2672
ddddffffffqqqqqqqqffffff22ddd	chr19:16243686-16244010(+)$1	324	77	106	12.4286
:eeeee[a[aqqqqqqqqa]aeeeeehhh	chr5:85913755-85913963(+)$1	208	27	56	12.0589
!!ccc[a[cccpppppppccc]accc22a	chr6:86322408-86322643(-)$1	235	52	81	11.1814
c[ccc"""cccpppppppccc333ccc]c	chr16:2217977-2218204(+)$1	227	97	126	11.7637
iii"""cccrrrrrrrrrccc]iiiiiii	chr20:33516338-33516574(-)$1	236	84	113	13.1708
ffffffcccrrrrrrrrrccc]ffffff:	chr17:20905882-20906115(-)$1	233	200	229	11.1568
fdddd!!cccrrrrrrrrrccc22dddd:	chr7:135613583-135613788(-)$1	205	95	124	11.5654
fffddddcccrrrrrrrrrccc4444ddd	chr17:76219521-76219768(+)$1	247	95	124	12.2564
bb!!dddd[aqqqqqqqqa]dddd22bb]	chr2:105977384-105977608(-)$1	224	117	146	13.1149
cc[ccc[cccrrrrrrrrrccccccccc]	chr10:81930545-81930771(-)$1	226	153	182	13.1642
ee[ccc[a!!aqqqqqqqqa22a]cccee	chr17:73702376-73702655(+)$1	279	190	219	13.1473
e!!dddd[bbqqqqqqqqbb]dddd333e	chr2:12863370-12863590(+)$1	220	8	37	14.0056
""dddd[cccqqqqqqqqccc22dddd33	chr12:48174737-48175018(+)$1	281	16	45	15.7512
ccc[ddddrrrrrrrrrdddd]ccc]ddd	chr19:1440105-1440312(+)$1	207	104	133	10.4520
[ccc[bb[bbqqqqqqqqbb]bb]ccc]f	chr4:84391310-84391567(-)$1	257	79	108	13.0510
f!!gggggggqqqqqqqqggggggg22ff	chr11:8941395-8941637(+)$1	242	89	118	13.8891
"""bb[ddddqqqqqqqqddddbb22fff	chr14:23415602-23415831(-)$1	229	10	39	12.7865
&ccc!!ddddqqqqqqqqdddd333cccd	chr7:64838682-64838959(+)$1	277	25	54	14.1162
ee[ccccccrrrrrrrrrccc]ccc]eee	chr10:64566305-64566574(+)$1	269	225	254	13.0133
fffff!!cccqqqqqqqqccc]ffffffF	chr6:125598150-125598367(-)$1	217	49	78	14.3923
ccbbffffffqqqqqqqqffffff]bb]c	chr13:48832197-48832418(+)$1	221	73	102	12.2098
ga[ccc[cccqqqqqqqqccc]ccc]a]g	chr1:93300235-93300437(+)$1	202	103	132	16.2955
""ddddcccrrrrrrrrrccc]dddd333	chr3:4888812-4889118(+)$1	306	235	264	13.2769
dd!!dddd[aqqqqqqqqa]dddd22ddd	chr4:77976398-77976610(-)$1	212	16	45	13.7077
b[ccc[ddddqqqqqqqqdddd22ccc]b	chr16:67476944-67477185(-)$1	241	114	143	14.1268
ddddddd[bbqqqqqqqqbbdddd]dddd	chr10:76855245-76855577(-)$1	332	158	187	12.6897
ffffff!!bbqqqqqqqqbb22ffffffb	chrX:153608496-153608715(+)$1	219	188	217	12.7076
ff"""ccc[aqqqqqqqqa]ccc333fff	chr3:14184283-14184619(+)$1	336	138	167	15.0515
$ffffff!!aqqqqqqqqa22ffffff]g	chr11:62397826-62398036(-)$1	210	126	155	13.1073
========[aqqqqqqqqa==========	chr1:114518921-114519133(+)$1	212	90	119	15.2706
gggggg[bbrrrrrrrrrbbgggggggee	chr3:52288876-52289140(-)$1	264	103	132	11.3383
hhheeeee[aqqqqqqqqa]eeeee]hhh	chr12:111157570-111157806(-)$1	236	136	165	12.2194
[ccc!!cccrrrrrrrrrccc22ccc333	chr5:180666445-180666655(-)$1	210	162	191	13.9648
!!ddddcccrrrrrrrrrccc]dddd22b	chr12:49523068-49523273(-)$1	205	80	109	12.5765
eee!!eeeeeqqqqqqqqeeeee22eeee	chr19:989746-989994(+)$1	248	171	200	12.5902
dddd!!ddddqqqqqqqqdddddddd]dd	chr17:61670767-61671064(+)$1	297	6	35	13.1267
"""ccc[acccpppppppccc]a]ccc>>	chrX:154467823-154468073(+)$1	250	144	173	11.3390
e:ddddcccrrrrrrrrrccc333ddddD	chrX:48334591-48334846(+)$1	255	87	116	11.0127
====####arrrrrrrrra4444======	chrX:118920445-118920653(-)$1	208	110	139	12.8092
[a!!ddddrrrrrrrrrdddd22accc33	chr7:151075166-151075383(+)$1	217	172	201	11.3007
b####eeeeerrrrrrrrreeeee4444b	chr11:61556561-61556800(-)$1	239	123	152	10.8566
$$$gggggggqqqqqqqqggggggg4444	chr2:176046058-176046264(-)$1	206	50	79	13.9771
""dddd[cccrrrrrrrrrcccdddd]ee	chr6:116421975-116422229(+)$1	254	117	146	12.5180
ffffff[cccqqqqqqqqccc]ffffff>	chr8:37613733-37614021(+)$1	288	122	151	14.4892
"""ddddcccqqqqqqqqccc22dddd22	chr8:117671023-117671226(-)$1	203	114	143	15.2670
eeccc!!cccqqqqqqqqccc333ccc]e	chr10:94452132-94452377(+)$1	245	89	118	16.4569
!gggggggbbqqqqqqqqbb]ggggggg2	chr22:42479128-42479407(+)$1	279	226	255	13.6653
fffccc[cccqqqqqqqqccc22ccceee	chr17:73259477-73259685(+)$1	208	74	103	15.2864
""a!!eeeeeqqqqqqqqeeeee22a333	chr19:33072055-33072278(+)$1	223	147	176	13.9877
dddd"""cccqqqqqqqqccc333dddd:	chr19:49514155-49514380(+)$1	225	113	142	14.6217
ccc[bb[cccqqqqqqqqccc333bb]cc	chr12:120638507-120638710(-)$1	203	33	62	14.9946
c"""ffffffrrrrrrrrrffffff22cc	chr17:78109140-78109380(-)$1	240	15	44	10.9853
cc[ccc[a[assssssssssa]a]ccc]c	chr22:31500338-31500592(+)$1	254	205	234	10.9566
[ffffff[bbqqqqqqqqbb]ffffff]c	chr8:117657087-117657303(-)$1	216	182	211	13.0498
dddd!!ddddqqqqqqqqdddd22dddd]	chr19:46190874-46191082(-)$1	208	154	183	13.4399

#otherMatches

#Seq PSSM
GCUGCCACUGAAUAGGGCCCAGUAUAGGG	chr2:27293386-27293598(-)$1	212	168	197	11.9282
GCUUGUAAUGUCUCUUUUCAUCAUAUGUA	chr17:1324324-1324595(-)$1	271	27	56	16.2438
UAGGAAAAGCUCAAGACUGUUAUUUUAUG	chr8:90801461-90801717(+)$1	256	84	113	16.2672
GCCUCUCCUGUCCACAGCCAGGGGUUAGG	chr19:16243686-16244010(+)$1	324	77	106	12.4286
ACAAGGUCGUGAAAAAAAAGGUCUUGGUG	chr5:85913755-85913963(+)$1	208	27	56	12.0589
UUGCUAUGUGGGAUUACACCAGAAGCUUG	chr6:86322408-86322643(-)$1	235	52	81	11.1814
CAGCUGACGGGACCAGCACCUACAAGCAG	chr16:2217977-2218204(+)$1	227	97	126	11.7637
AGGACCAGAAAAGUUGUGUCUCCCUUAGA	chr20:33516338-33516574(-)$1	236	84	113	13.1708
ACAGAGGGCCUUGCAGAUGCCUUUCUGUU	chr17:20905882-20906115(-)$1	233	200	229	11.1568
CUGAUUACUUACUGCACCAAAGCUAUCAC	chr7:135613583-135613788(-)$1	205	95	124	11.5654
GCUGGCUGCCAUGGAUUGAGGCCUCUGGC	chr17:76219521-76219768(+)$1	247	95	124	12.2564
CACCCAAAUGUAAAAAUCCUUUUGAAUGA	chr2:105977384-105977608(-)$1	224	117	146	13.1149
AUCGGGCUGGAUAACGUGGCCACCUAUGC	chr10:81930545-81930771(-)$1	226	153	182	13.1642
CUGUGGGCACCAUUGUGAAGAAGGCCAAG	chr17:73702376-73702655(+)$1	279	190	219	13.1473
GUCGUAGGUGUUUGAUAUCAGCUGCUACC	chr2:12863370-12863590(+)$1	220	8	37	14.0056
CAGGCAAGGGUUUCCAUCCCCGCUGCCCU	chr12:48174737-48175018(+)$1	281	16	45	15.7512
GGGCGUCUACAACGGCAAGACCUUCAACC	chr19:1440105-1440312(+)$1	207	104	133	10.4520
GGCUGCUUCACAAAAACUUGCAGGAGCAU	chr4:84391310-84391567(-)$1	257	79	108	13.0510
CAGUGCCUUUUUUAACUUGAGGGUGUAGA	chr11:8941395-8941637(+)$1	242	89	118	13.8891
CAGGCUGGUGAAAGAGUACACCGUACUCA	chr14:23415602-23415831(-)$1	229	10	39	12.7865
AUCCAAUCAGGCACGCAACUGGAGCGGAC	chr7:64838682-64838959(+)$1	277	25	54	14.1162
UUAUGCUUCCAAACAACUGAAUGUAAAAC	chr10:64566305-64566574(+)$1	269	225	254	13.0133
UCAAGCAUCUGAAUAUGAAGACCUUGAAC	chr6:125598150-125598367(-)$1	217	49	78	14.3923
GCCUAUUUAGAUCUUAACCUGGAUAAGUG	chr13:48832197-48832418(+)$1	221	73	102	12.2098
GCUUAUGCCCGUAUAGAGGGGGAUAUGAU	chr1:93300235-93300437(+)$1	202	103	132	16.2955
AUGGAUCUCAUUUUACAAGAGAAUCUCUC	chr3:4888812-4889118(+)$1	306	235	264	13.2769
UUCUAUAUGUAAUUUCCCAGAUAUUUAAA	chr4:77976398-77976610(-)$1	212	16	45	13.7077
CCAGGACUGCAUUUCAGAGCAGGACCUUG	chr16:67476944-67477185(-)$1	241	114	143	14.1268
AGGCGGACGACAACCCCUUCUUCGACCUC	chr10:76855245-76855577(-)$1	332	158	187	12.6897
GUCAGUGACUUCAUUCCCAGAUGCUGACG	chrX:153608496-153608715(+)$1	219	188	217	12.7076
CACAAUCAAGAACUGAGGCCUGAGGCUGG	chr3:14184283-14184619(+)$1	336	138	167	15.0515
ACCUGGGGCUGUAUGUUAAAACCCGGGAU	chr11:62397826-62398036(-)$1	210	126	155	13.1073
GUUCCUUGUCUUUUUUCUGUAAGGGACAA	chr1:114518921-114519133(+)$1	212	90	119	15.2706
gcggugaguugagaucgugccauugcacu	chr3:52288876-52289140(-)$1	264	103	132	11.3383
GAACUGUUGAUGGCAUAUUGAAUAGAUUU	chr12:111157570-111157806(-)$1	236	136	165	12.2194
GGUCAAGGUGAGCGUCAAGCCAAGGCAGG	chr5:180666445-180666655(-)$1	210	162	191	13.9648
UCCUUCUCUCCCUCCUCCAGAUGAAGUUC	chr12:49523068-49523273(-)$1	205	80	109	12.5765
CUGCACCUGGAACUGCACCCGGGCUCAGG	chr19:989746-989994(+)$1	248	171	200	12.5902
AUGUCAUUUUUAAAAUAUGGAAACAUGCA	chr17:61670767-61671064(+)$1	297	6	35	13.1267
GACCAGCGCUGGGUGAUACAGAUUCUGAU	chrX:154467823-154468073(+)$1	250	144	173	11.3390
AUUCGGGUGGACUACGAACACAAACUGAA	chrX:48334591-48334846(+)$1	255	87	116	11.0127
GUUUUCCUCUCUGAAUCUGUUAUGAACAC	chrX:118920445-118920653(-)$1	208	110	139	12.8092
UGCCAGGUGCAUCCAAGACUUUCCCUCCC	chr7:151075166-151075383(+)$1	217	172	201	11.3007
CUUUUGUAAAUUACUUUUUUUUACUGUUG	chr11:61556561-61556800(-)$1	239	123	152	10.8566
AAGCCUCUUUUCCUCCGCAGAGAGGAAGC	chr2:176046058-176046264(-)$1	206	50	79	13.9771
CAUGGCUCAGCACUUCUCCCUGGCCGCCU	chr6:116421975-116422229(+)$1	254	117	146	12.5180
UCUGAGCUCUUGUUGCCUAGACCUCAGAA	chr8:37613733-37614021(+)$1	288	122	151	14.4892
CUCCUGGACUCUCAGUUUAGUUACCAGCA	chr8:117671023-117671226(-)$1	203	114	143	15.2670
GAAGAAAUUCGAGACGCAGAAAUAUCUCU	chr10:94452132-94452377(+)$1	245	89	118	16.4569
UCAGCCGUGCGUGACUGAGUGAUGGCUGC	chr22:42479128-42479407(+)$1	279	226	255	13.6653
GCUGGUACCCAUCCUCAAGGGAGGCCGUU	chr17:73259477-73259685(+)$1	208	74	103	15.2864
GAGGCUGGCCGAGCUGCAGGCCAAACACG	chr19:33072055-33072278(+)$1	223	147	176	13.9877
GAUCAAGUCAGAAGUCCGUGAGCAGAUCA	chr19:49514155-49514380(+)$1	225	113	142	14.6217
GGGUGUCGGCGUGACCAGGCCUGAGCUCC	chr12:120638507-120638710(-)$1	203	33	62	14.9946
GUUAACAAAUUUUCAUUUUGUUUGUGUUG	chr17:78109140-78109380(-)$1	240	15	44	10.9853
GUCUGUUGCGACACCCUCCCCCCCACAUA	chr22:31500338-31500592(+)$1	254	205	234	10.9566
UUGGCUAUAACAGUGUCUUUCUAGCCAUA	chr8:117657087-117657303(-)$1	216	182	211	13.0498
UGGCAAGGGCAAGAAGAAGUCCAAGCCAG	chr19:46190874-46191082(-)$1	208	154	183	13.4399

#DB
(((.(.((((.........))))...).)	chr2:27293386-27293598(-)$1	1	168	197	11.9282
.(.(((.(((........))).))).)))	chr17:1324324-1324595(-)$1	1	27	56	16.2438
(((((..(((........))).)))))))	chr8:90801461-90801717(+)$1	1	84	113	16.2672
((((((((((........))))))..)))	chr19:16243686-16244010(+)$1	1	77	106	12.4286
.(((((.(.(........).))))))(((	chr5:85913755-85913963(+)$1	1	27	56	12.0589
..(((.(.(((.......))).))))..)	chr6:86322408-86322643(-)$1	1	52	81	11.1814
(.(((...(((.......)))...))).)	chr16:2217977-2218204(+)$1	1	97	126	11.7637
(((...(((.........))).)))))))	chr20:33516338-33516574(-)$1	1	84	113	13.1708
(((((((((.........))).)))))).	chr17:20905882-20906115(-)$1	1	200	229	11.1568
)((((..(((.........)))..)))).	chr7:135613583-135613788(-)$1	1	95	124	11.5654
((((((((((.........)))....)))	chr17:76219521-76219768(+)$1	1	95	124	12.2564
((..((((.(........).))))..)).	chr2:105977384-105977608(-)$1	1	117	146	13.1149
((.(((.(((.........))))))))).	chr10:81930545-81930771(-)$1	1	153	182	13.1642
((.(((.(..(........)..).)))))	chr17:73702376-73702655(+)$1	1	190	219	13.1473
(..((((.((........)).))))...)	chr2:12863370-12863590(+)$1	1	8	37	14.0056
..((((.(((........)))..))))..	chr12:48174737-48175018(+)$1	1	16	45	15.7512
(((.((((.........)))).))).)))	chr19:1440105-1440312(+)$1	1	104	133	10.4520
.(((.((.((........)).)).))).)	chr4:84391310-84391567(-)$1	1	79	108	13.0510
(..(((((((........)))))))..))	chr11:8941395-8941637(+)$1	1	89	118	13.8891
...((.((((........))))))..)))	chr14:23415602-23415831(-)$1	1	10	39	12.7865
.(((..((((........))))...))))	chr7:64838682-64838959(+)$1	1	25	54	14.1162
((.((((((.........))).))).)))	chr10:64566305-64566574(+)$1	1	225	254	13.0133
(((((..(((........))).)))))))	chr6:125598150-125598367(-)$1	1	49	78	14.3923
((((((((((........)))))).)).)	chr13:48832197-48832418(+)$1	1	73	102	12.2098
((.(((.(((........))).))).).)	chr1:93300235-93300437(+)$1	1	103	132	16.2955
..(((((((.........))).))))...	chr3:4888812-4889118(+)$1	1	235	264	13.2769
((..((((.(........).))))..)))	chr4:77976398-77976610(-)$1	1	16	45	13.7077
(.(((.((((........))))..))).)	chr16:67476944-67477185(-)$1	1	114	143	14.1268
(((((((.((........)))))).))))	chr10:76855245-76855577(-)$1	1	158	187	12.6897
((((((..((........))..)))))))	chrX:153608496-153608715(+)$1	1	188	217	12.7076
((...(((.(........).)))...)))	chr3:14184283-14184619(+)$1	1	138	167	15.0515
.((((((..(........)..)))))).)	chr11:62397826-62398036(-)$1	1	126	155	13.1073
((((((((.(........)))))))))))	chr1:114518921-114519133(+)$1	1	90	119	15.2706
((((((.((.........)))))))))))	chr3:52288876-52289140(-)$1	1	103	132	11.3383
((((((((.(........).))))).)))	chr12:111157570-111157806(-)$1	1	136	165	12.2194
.(((..(((.........)))..)))...	chr5:180666445-180666655(-)$1	1	162	191	13.9648
..(((((((.........))).))))..)	chr12:49523068-49523273(-)$1	1	80	109	12.5765
(((..(((((........)))))..))))	chr19:989746-989994(+)$1	1	171	200	12.5902
((((..((((........)))))))).))	chr17:61670767-61671064(+)$1	1	6	35	13.1267
...(((.((((.......))).).)))..	chrX:154467823-154468073(+)$1	1	144	173	11.3390
).(((((((.........)))...)))))	chrX:48334591-48334846(+)$1	1	87	116	11.0127
((((....(.........)....))))))	chrX:118920445-118920653(-)$1	1	110	139	12.8092
.(..((((.........))))..))))..	chr7:151075166-151075383(+)$1	1	172	201	11.3007
(....(((((.........)))))....)	chr11:61556561-61556800(-)$1	1	123	152	10.8566
...(((((((........)))))))....	chr2:176046058-176046264(-)$1	1	50	79	13.9771
..((((.(((.........))))))).))	chr6:116421975-116422229(+)$1	1	117	146	12.5180
((((((.(((........))).)))))).	chr8:37613733-37614021(+)$1	1	122	151	14.4892
...(((((((........)))..))))..	chr8:117671023-117671226(-)$1	1	114	143	15.2670
(((((..(((........)))...))).)	chr10:94452132-94452377(+)$1	1	89	118	16.4569
.(((((((((........)).))))))).	chr22:42479128-42479407(+)$1	1	226	255	13.6653
)))(((.(((........)))..)))(((	chr17:73259477-73259685(+)$1	1	74	103	15.2864
..(..(((((........)))))..)...	chr19:33072055-33072278(+)$1	1	147	176	13.9877
((((...(((........)))...)))).	chr19:49514155-49514380(+)$1	1	113	142	14.6217
(((.((.(((........)))...)).))	chr12:120638507-120638710(-)$1	1	33	62	14.9946
(...((((((.........))))))..))	chr17:78109140-78109380(-)$1	1	15	44	10.9853
((.(((.(.(..........).).))).)	chr22:31500338-31500592(+)$1	1	205	234	10.9566
.((((((.((........)).)))))).)	chr8:117657087-117657303(-)$1	1	182	211	13.0498
((((..((((........))))..)))).	chr19:46190874-46191082(-)$1	1	154	183	13.4399

#PSSM
f : 0.15	e : 0.12	c : 0.12	" : 0.12	d : 0.10	[ : 0.08	= : 0.05	! : 0.05	b : 0.05	g : 0.03	$ : 0.03	: : 0.01	i : 0.01	& : 0.01	h : 0.01	
f : 0.15	c : 0.13	" : 0.13	d : 0.12	e : 0.10	! : 0.06	a : 0.05	= : 0.05	[ : 0.03	g : 0.03	i : 0.01	b : 0.01	h : 0.01	: : 0.01	# : 0.01	$ : 0.01	
d : 0.18	c : 0.15	f : 0.13	[ : 0.10	! : 0.08	" : 0.08	e : 0.05	= : 0.05	g : 0.03	i : 0.01	b : 0.01	h : 0.01	# : 0.01	$ : 0.01	a : 0.01	
c : 0.25	d : 0.24	f : 0.10	! : 0.08	g : 0.06	[ : 0.05	= : 0.05	" : 0.05	e : 0.03	b : 0.03	# : 0.01	
d : 0.24	c : 0.20	f : 0.15	! : 0.10	g : 0.06	" : 0.05	= : 0.03	e : 0.03	b : 0.03	# : 0.03	a : 0.01	[ : 0.01	
d : 0.22	c : 0.15	! : 0.13	f : 0.13	e : 0.08	[ : 0.06	g : 0.06	" : 0.05	b : 0.03	= : 0.01	# : 0.01	
d : 0.24	[ : 0.22	c : 0.13	! : 0.08	f : 0.08	e : 0.06	g : 0.05	" : 0.03	a : 0.01	b : 0.01	= : 0.01	# : 0.01	
c : 0.39	d : 0.17	[ : 0.08	a : 0.06	e : 0.06	f : 0.05	g : 0.05	! : 0.03	" : 0.01	= : 0.01	b : 0.01	# : 0.01	
c : 0.43	[ : 0.12	b : 0.12	d : 0.10	f : 0.05	e : 0.05	! : 0.03	r : 0.03	g : 0.03	a : 0.01	
c : 0.31	r : 0.18	a : 0.13	d : 0.10	b : 0.10	f : 0.05	e : 0.05	g : 0.03	! : 0.01	
q : 0.60	r : 0.31	c : 0.05	a : 0.01	s : 0.01	
q : 0.62	r : 0.31	p : 0.05	s : 0.01	
q : 0.62	r : 0.31	p : 0.05	s : 0.01	
q : 0.62	r : 0.31	p : 0.05	s : 0.01	
q : 0.62	r : 0.31	p : 0.05	s : 0.01	
q : 0.62	r : 0.31	p : 0.05	s : 0.01	
q : 0.62	r : 0.31	p : 0.05	s : 0.01	
q : 0.62	r : 0.27	p : 0.05	d : 0.03	s : 0.01	
c : 0.36	a : 0.13	r : 0.12	b : 0.12	d : 0.12	f : 0.03	g : 0.03	e : 0.03	q : 0.01	s : 0.01	
c : 0.43	d : 0.13	b : 0.12	] : 0.08	f : 0.05	e : 0.05	g : 0.03	a : 0.01	2 : 0.01	= : 0.01	4 : 0.01	s : 0.01	
c : 0.44	d : 0.18	] : 0.06	e : 0.06	f : 0.05	2 : 0.05	g : 0.05	a : 0.03	= : 0.01	4 : 0.01	
] : 0.24	d : 0.17	2 : 0.12	f : 0.08	e : 0.08	3 : 0.08	c : 0.08	g : 0.06	b : 0.01	= : 0.01	4 : 0.01	
d : 0.15	f : 0.15	2 : 0.13	c : 0.10	3 : 0.10	e : 0.08	a : 0.06	g : 0.06	= : 0.03	4 : 0.03	b : 0.03	i : 0.01	
d : 0.17	f : 0.15	3 : 0.13	c : 0.13	2 : 0.08	] : 0.06	g : 0.06	= : 0.05	e : 0.05	i : 0.01	4 : 0.01	b : 0.01	a : 0.01	
c : 0.27	d : 0.18	f : 0.12	2 : 0.10	g : 0.06	3 : 0.05	= : 0.05	e : 0.03	4 : 0.03	] : 0.03	i : 0.01	b : 0.01	
c : 0.22	d : 0.18	2 : 0.10	f : 0.10	] : 0.08	3 : 0.05	= : 0.05	4 : 0.05	e : 0.03	b : 0.03	g : 0.03	i : 0.01	a : 0.01	
d : 0.18	c : 0.17	f : 0.13	2 : 0.06	3 : 0.06	a : 0.05	= : 0.05	e : 0.05	] : 0.05	h : 0.03	b : 0.03	g : 0.03	4 : 0.03	i : 0.01	
] : 0.17	d : 0.17	f : 0.12	e : 0.10	3 : 0.10	c : 0.06	= : 0.05	2 : 0.05	g : 0.03	h : 0.03	4 : 0.03	i : 0.01	b : 0.01	> : 0.01	
e : 0.15	d : 0.12	c : 0.10	3 : 0.08	f : 0.06	b : 0.06	g : 0.05	= : 0.05	: : 0.05	] : 0.05	h : 0.03	> : 0.03	2 : 0.03	a : 0.01	i : 0.01	F : 0.01	D : 0.01	4 : 0.01	

#score	766.1809947497461
#seq	58
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_UTR_m3_run1.txt

#BEAR
::::::::::::::::::::	chr21:46915826-46916036(+)$1	210	62	82	9.0530
::::::::::::::::::::	chr2:209170044-209170314(+)$1	270	85	105	9.0530
::::::::::::::::::::	chr16:4854960-4855227(-)$1	267	88	108	9.0530
::::::::::::::::::::	chr4:107269939-107270273(+)$1	334	175	195	9.0530
::::::::::::::::::::	chr17:56405733-56406033(-)$1	300	263	283	9.0530
::::::::::::::::::::	chr1:45116489-45116741(+)$1	252	93	113	9.0530
::::::::::::::::::::	chr11:6634909-6635199(-)$1	290	60	80	9.0530
::::::::::::::::::::	chr16:67209899-67210152(-)$1	253	120	140	9.0530
::::::::::::::::::::	chr17:4618845-4619209(+)$1	364	0	20	9.0530
::::::::::::::::::::	chr10:50534854-50535129(+)$1	275	90	110	9.0530
::::::::::::::::::::	chr8:27660939-27661226(+)$1	287	125	145	9.0530
D:::::::::::::::::::	chr2:168725309-168725561(-)$1	252	231	251	8.4471
::::::::::::::::::::	chr10:18829766-18830072(-)$1	306	281	301	9.0530
::::::::::::::::::::	chr21:46915752-46915996(+)$1	244	170	190	9.0530
::::::::::::::::::::	chr4:145031783-145032018(-)$1	235	44	64	9.0530
::::::::::::::::::::	chr9:15463410-15463699(+)$1	289	0	20	9.0530
c:::::::::::::::::::	chr15:75952772-75953084(+)$1	312	144	164	8.1329
::::::::::::::::::::	chr13:30779809-30780054(-)$1	245	138	158	9.0530
::::::::::::::::::::	chr1:31345291-31345556(-)$1	265	217	237	9.0530
::::::::::::::::::::	chrX:79931653-79931938(-)$1	285	52	72	9.0530
::::::::::::::::::::	chr4:145031818-145032050(-)$1	232	76	96	9.0530
F:::::::::::::::::::	chr9:37779856-37780186(-)$1	330	251	271	8.3347
::::::::::::::::::::	chr18:23615620-23615915(-)$1	295	137	157	9.0530
::::::::::::::::::::	chr10:102760893-102761175(+)$1	282	110	130	9.0530
::::::::::::::::::::	chr1:43133379-43133667(+)$1	288	0	20	9.0530
::::::::::::::::::::	chr21:46915796-46916016(+)$1	220	92	112	9.0530
::::::::::::::::::::	chr17:56405628-56405867(-)$1	239	0	20	9.0530
::::::::::::::::::::	chr5:112213509-112213809(-)$1	300	94	114	9.0530
::::::::::::::::::::	chr10:50534929-50535212(+)$1	283	12	32	9.0530
::::::::::::::::::::	chr5:89755427-89755735(-)$1	308	101	121	9.0530
::::::::::::::::::::	chr7:104753484-104753743(+)$1	259	0	20	9.0530
::::::::::::::::::::	chr7:99268573-99268948(-)$1	375	169	189	9.0530
::::::::::::::::::::	chr8:91094784-91095120(-)$1	336	160	180	9.0530
::::::::::::::::::::	chr11:72433023-72433350(-)$1	327	61	81	9.0530
::::::::::::::::::::	chr9:94972889-94973179(-)$1	290	0	20	9.0530
::::::::::::::::::::	chr7:128498605-128498842(+)$1	237	14	34	9.0530
::::::::::::::::::::	chr12:102792754-102793073(-)$1	319	150	170	9.0530
::::::::::::::::::::	chr10:70516228-70516489(+)$1	261	78	98	9.0530
::::::::::::::::::::	chr5:139494627-139494904(+)$1	277	128	148	9.0530
:::::::::::::::::::b	chr5:38962901-38963156(-)$1	255	94	114	8.4486
::::::::::::::::::::	chrX:79931738-79932007(-)$1	269	21	41	9.0530
::::::::::::::::::::	chrX:123045877-123046139(+)$1	262	205	225	9.0530
::::::::::::::::::::	chr19:41938660-41938952(-)$1	292	230	250	9.0530
::::::::::::::::::::	chr5:139944786-139945077(+)$1	291	0	20	9.0530
::::::::::::::::::::	chr16:24230970-24231191(+)$1	221	0	20	9.0530
::::::::::::::::::::	chr20:5975054-5975300(+)$1	246	80	100	9.0530
a:::::::::::::::::::	chr19:41938933-41939187(-)$1	254	47	67	8.4603
::::::::::::::::::::	chr20:44512599-44512930(+)$1	331	136	156	9.0530
::::::::::::::::::::	chr21:46915724-46915952(+)$1	228	164	184	9.0530
::::::::::::::::::::	chr1:52253785-52254008(+)$1	223	23	43	9.0530
::::::::::::::::::::	chr20:37206230-37206567(+)$1	337	111	131	9.0530
::::::::::::::::::::	chr6:146230352-146230621(-)$1	269	172	192	9.0530
::::::::::::::::::::	chr6:31715102-31715374(+)$1	272	193	213	9.0530
::::::::::::::::::::	chr11:125491006-125491282(+)$1	276	93	113	9.0530
::::::::::::::::::::	chr3:128532285-128532534(+)$1	249	35	55	9.0530
::::::::::::::::::::	chrX:48205928-48206184(-)$1	256	123	143	9.0530
::::::::::::::::::::	chr16:4737286-4737589(+)$1	303	56	76	9.0530
::::::::::::::::::::	chr2:168725140-168725434(-)$1	294	164	184	9.0530
::::::::::::::::::::	chr17:56405566-56405783(-)$1	217	114	134	9.0530
::::::::::::::::::::	chr14:65233000-65233244(-)$1	244	198	218	9.0530
::::::::::::::::::::	chr17:4619009-4619264(+)$1	255	0	20	9.0530
::::::::::::::::::::	chr3:9860773-9861082(+)$1	309	46	66	9.0530
::::::::::::::::::::	chr16:30590323-30590601(-)$1	278	0	20	9.0530
::::::::::::::::::::	chr12:105155107-105155412(+)$1	305	123	143	9.0530
::::::::::::::::::::	chr2:157181700-157182006(-)$1	306	142	162	9.0530
::::::::::::::::::::	chrX:118750885-118751178(-)$1	293	70	90	9.0530
::::::::::::::::::::	chr7:150646453-150646719(-)$1	266	51	71	9.0530

#otherMatches

#Seq PSSM
uacacaccaauacacauaua	chr21:46915826-46916036(+)$1	210	62	82	9.0530
AUAAUAUUUCACUAAACCCA	chr2:209170044-209170314(+)$1	270	85	105	9.0530
CCUAUCUCCAUUUCCUUUUA	chr16:4854960-4855227(-)$1	267	88	108	9.0530
ACACACAAAUACACACACUC	chr4:107269939-107270273(+)$1	334	175	195	9.0530
caauacagacacccacacac	chr17:56405733-56406033(-)$1	300	263	283	9.0530
cacacacacacauuuacaca	chr1:45116489-45116741(+)$1	252	93	113	9.0530
AACCAUUACCAUCUCACUAA	chr11:6634909-6635199(-)$1	290	60	80	9.0530
ACUCCCAUUacacacacaca	chr16:67209899-67210152(-)$1	253	120	140	9.0530
GCAAacacacacacacggac	chr17:4618845-4619209(+)$1	364	0	20	9.0530
ACUUCCCCCUCCCCCAAAAC	chr10:50534854-50535129(+)$1	275	90	110	9.0530
auacacacacacacacacac	chr8:27660939-27661226(+)$1	287	125	145	9.0530
CCUCUUAACUCUGCAAAAUC	chr2:168725309-168725561(-)$1	252	231	251	8.4471
AUAUAGCACAAUUAAUUAAA	chr10:18829766-18830072(-)$1	306	281	301	9.0530
cccauauacacacauacaAC	chr21:46915752-46915996(+)$1	244	170	190	9.0530
cacacacacacacacacaaa	chr4:145031783-145032018(-)$1	235	44	64	9.0530
AAUCAAAACACAUACGUACA	chr9:15463410-15463699(+)$1	289	0	20	9.0530
UAUUACACAUUCACAGCCAC	chr15:75952772-75953084(+)$1	312	144	164	8.1329
acacacacacacacacacac	chr13:30779809-30780054(-)$1	245	138	158	9.0530
CCACACUAUCACCAUAUUUU	chr1:31345291-31345556(-)$1	265	217	237	9.0530
CCcacacacacacaaacaca	chrX:79931653-79931938(-)$1	285	52	72	9.0530
cacacacacacacacacaaa	chr4:145031818-145032050(-)$1	232	76	96	9.0530
GCUAAAAUCAUUUCCUAGGA	chr9:37779856-37780186(-)$1	330	251	271	8.3347
ACACACAUACACAUAUAUAU	chr18:23615620-23615915(-)$1	295	137	157	9.0530
AUCCACAUUUAUAACUUUCA	chr10:102760893-102761175(+)$1	282	110	130	9.0530
GUAUCAAUGUGAAAACUACU	chr1:43133379-43133667(+)$1	288	0	20	9.0530
uacacaccaauacacauaua	chr21:46915796-46916016(+)$1	220	92	112	9.0530
cacugacagacacacaacga	chr17:56405628-56405867(-)$1	239	0	20	9.0530
acacacacacacacacacac	chr5:112213509-112213809(-)$1	300	94	114	9.0530
CUUACUUCCCCCUCCCCCAA	chr10:50534929-50535212(+)$1	283	12	32	9.0530
UUAUUCAUUCAACUcacaca	chr5:89755427-89755735(-)$1	308	101	121	9.0530
AUCCCUCACAAGCUACACAU	chr7:104753484-104753743(+)$1	259	0	20	9.0530
acacacacacacacacacac	chr7:99268573-99268948(-)$1	375	169	189	9.0530
AUAUUCACACACCCAGACAC	chr8:91094784-91095120(-)$1	336	160	180	9.0530
acacacacauacacacagac	chr11:72433023-72433350(-)$1	327	61	81	9.0530
CAUUCUAGAAAUUACAGAAG	chr9:94972889-94973179(-)$1	290	0	20	9.0530
acacacacauuacacacaca	chr7:128498605-128498842(+)$1	237	14	34	9.0530
cacacacacacacacacaca	chr12:102792754-102793073(-)$1	319	150	170	9.0530
ACACCACACACUACAUAAUA	chr10:70516228-70516489(+)$1	261	78	98	9.0530
acacacacacacaugcauac	chr5:139494627-139494904(+)$1	277	128	148	9.0530
AGACCACAUUAUUCAGAAAG	chr5:38962901-38963156(-)$1	255	94	114	8.4486
CAUUUAUGCCAGUAUACAUU	chrX:79931738-79932007(-)$1	269	21	41	9.0530
ACACAAUAAAAAAAAAAAAU	chrX:123045877-123046139(+)$1	262	205	225	9.0530
acacacacacacacacacac	chr19:41938660-41938952(-)$1	292	230	250	9.0530
CACUCACACCACCCUCAUUC	chr5:139944786-139945077(+)$1	291	0	20	9.0530
ACAGCAacacacacacacac	chr16:24230970-24231191(+)$1	221	0	20	9.0530
acacacacacacacacacac	chr20:5975054-5975300(+)$1	246	80	100	9.0530
CACCUCUCCCACCUAACCCA	chr19:41938933-41939187(-)$1	254	47	67	8.4603
uccacccauacacacacaca	chr20:44512599-44512930(+)$1	331	136	156	9.0530
uacacaccaauacacauaua	chr21:46915724-46915952(+)$1	228	164	184	9.0530
GUUCAUAUAAUCUCGGGAUa	chr1:52253785-52254008(+)$1	223	23	43	9.0530
acacacacacacacacacac	chr20:37206230-37206567(+)$1	337	111	131	9.0530
auacacauaaauaaaacaga	chr6:146230352-146230621(-)$1	269	172	192	9.0530
AUUCUCACAUACACCACCCC	chr6:31715102-31715374(+)$1	272	193	213	9.0530
AACUAUCAAAGACCAAUUCA	chr11:125491006-125491282(+)$1	276	93	113	9.0530
CUUCAACACAAUUCCCCUCU	chr3:128532285-128532534(+)$1	249	35	55	9.0530
acacacaaaccacaccacac	chrX:48205928-48206184(-)$1	256	123	143	9.0530
aauucaagaucaguguagaa	chr16:4737286-4737589(+)$1	303	56	76	9.0530
ACAUACUGAAAUAAACAUAA	chr2:168725140-168725434(-)$1	294	164	184	9.0530
CACCCAUCUUCCCAACACAU	chr17:56405566-56405783(-)$1	217	114	134	9.0530
ACUCACCCCCUGCACCcaca	chr14:65233000-65233244(-)$1	244	198	218	9.0530
acacacacacaaacacacac	chr17:4619009-4619264(+)$1	255	0	20	9.0530
cacccacccacccuuccacu	chr3:9860773-9861082(+)$1	309	46	66	9.0530
caucaccuagauucuacaaa	chr16:30590323-30590601(-)$1	278	0	20	9.0530
CAGUCCUCCCCUacacacac	chr12:105155107-105155412(+)$1	305	123	143	9.0530
cacacauacacacacacaca	chr2:157181700-157182006(-)$1	306	142	162	9.0530
acacacacacacacacacac	chrX:118750885-118751178(-)$1	293	70	90	9.0530
ucucagcucuguacaaacac	chr7:150646453-150646719(-)$1	266	51	71	9.0530

#DB
....................	chr21:46915826-46916036(+)$1	1	62	82	9.0530
....................	chr2:209170044-209170314(+)$1	1	85	105	9.0530
....................	chr16:4854960-4855227(-)$1	1	88	108	9.0530
....................	chr4:107269939-107270273(+)$1	1	175	195	9.0530
....................	chr17:56405733-56406033(-)$1	1	263	283	9.0530
....................	chr1:45116489-45116741(+)$1	1	93	113	9.0530
....................	chr11:6634909-6635199(-)$1	1	60	80	9.0530
....................	chr16:67209899-67210152(-)$1	1	120	140	9.0530
....................	chr17:4618845-4619209(+)$1	1	0	20	9.0530
....................	chr10:50534854-50535129(+)$1	1	90	110	9.0530
....................	chr8:27660939-27661226(+)$1	1	125	145	9.0530
)...................	chr2:168725309-168725561(-)$1	1	231	251	8.4471
....................	chr10:18829766-18830072(-)$1	1	281	301	9.0530
....................	chr21:46915752-46915996(+)$1	1	170	190	9.0530
....................	chr4:145031783-145032018(-)$1	1	44	64	9.0530
....................	chr9:15463410-15463699(+)$1	1	0	20	9.0530
)...................	chr15:75952772-75953084(+)$1	1	144	164	8.1329
....................	chr13:30779809-30780054(-)$1	1	138	158	9.0530
....................	chr1:31345291-31345556(-)$1	1	217	237	9.0530
....................	chrX:79931653-79931938(-)$1	1	52	72	9.0530
....................	chr4:145031818-145032050(-)$1	1	76	96	9.0530
)...................	chr9:37779856-37780186(-)$1	1	251	271	8.3347
....................	chr18:23615620-23615915(-)$1	1	137	157	9.0530
....................	chr10:102760893-102761175(+)$1	1	110	130	9.0530
....................	chr1:43133379-43133667(+)$1	1	0	20	9.0530
....................	chr21:46915796-46916016(+)$1	1	92	112	9.0530
....................	chr17:56405628-56405867(-)$1	1	0	20	9.0530
....................	chr5:112213509-112213809(-)$1	1	94	114	9.0530
....................	chr10:50534929-50535212(+)$1	1	12	32	9.0530
....................	chr5:89755427-89755735(-)$1	1	101	121	9.0530
....................	chr7:104753484-104753743(+)$1	1	0	20	9.0530
....................	chr7:99268573-99268948(-)$1	1	169	189	9.0530
....................	chr8:91094784-91095120(-)$1	1	160	180	9.0530
....................	chr11:72433023-72433350(-)$1	1	61	81	9.0530
....................	chr9:94972889-94973179(-)$1	1	0	20	9.0530
....................	chr7:128498605-128498842(+)$1	1	14	34	9.0530
....................	chr12:102792754-102793073(-)$1	1	150	170	9.0530
....................	chr10:70516228-70516489(+)$1	1	78	98	9.0530
....................	chr5:139494627-139494904(+)$1	1	128	148	9.0530
...................(	chr5:38962901-38963156(-)$1	1	94	114	8.4486
....................	chrX:79931738-79932007(-)$1	1	21	41	9.0530
....................	chrX:123045877-123046139(+)$1	1	205	225	9.0530
....................	chr19:41938660-41938952(-)$1	1	230	250	9.0530
....................	chr5:139944786-139945077(+)$1	1	0	20	9.0530
....................	chr16:24230970-24231191(+)$1	1	0	20	9.0530
....................	chr20:5975054-5975300(+)$1	1	80	100	9.0530
)...................	chr19:41938933-41939187(-)$1	1	47	67	8.4603
....................	chr20:44512599-44512930(+)$1	1	136	156	9.0530
....................	chr21:46915724-46915952(+)$1	1	164	184	9.0530
....................	chr1:52253785-52254008(+)$1	1	23	43	9.0530
....................	chr20:37206230-37206567(+)$1	1	111	131	9.0530
....................	chr6:146230352-146230621(-)$1	1	172	192	9.0530
....................	chr6:31715102-31715374(+)$1	1	193	213	9.0530
....................	chr11:125491006-125491282(+)$1	1	93	113	9.0530
....................	chr3:128532285-128532534(+)$1	1	35	55	9.0530
....................	chrX:48205928-48206184(-)$1	1	123	143	9.0530
....................	chr16:4737286-4737589(+)$1	1	56	76	9.0530
....................	chr2:168725140-168725434(-)$1	1	164	184	9.0530
....................	chr17:56405566-56405783(-)$1	1	114	134	9.0530
....................	chr14:65233000-65233244(-)$1	1	198	218	9.0530
....................	chr17:4619009-4619264(+)$1	1	0	20	9.0530
....................	chr3:9860773-9861082(+)$1	1	46	66	9.0530
....................	chr16:30590323-30590601(-)$1	1	0	20	9.0530
....................	chr12:105155107-105155412(+)$1	1	123	143	9.0530
....................	chr2:157181700-157182006(-)$1	1	142	162	9.0530
....................	chrX:118750885-118751178(-)$1	1	70	90	9.0530
....................	chr7:150646453-150646719(-)$1	1	51	71	9.0530

#PSSM
: : 0.94	D : 0.01	c : 0.01	F : 0.01	a : 0.01	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 0.98	b : 0.01	

#score	603.1138318867739
#seq	67
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_transcript_m1_run2.txt

#BEAR
dddd^^^^^^^^^^^^^^^^^^dd	chr19:1604147-1604445(-)$1	298	49	73	25.6380
cc[a^^^^^^^^^^^^^^^^^^^^	chr16:88588165-88588465(+)$1	300	143	167	26.8834
iiii^^^^^^^^^^^^^^^^^^^i	chr19:40481501-40481777(+)$1	276	193	217	26.5961
ddddyyyyyyyyyyyyyyyydddd	chr7:75102114-75102366(-)$1	252	172	196	23.9512
!ccc^^^^^^^^^^^^^^^^^^^^	chr7:6429643-6429925(+)$1	282	78	102	27.2852
:eeeeewwwwwwwwwwwwwweeee	chr19:56173670-56173928(+)$1	258	173	197	18.2493
hhhhyyyyyyyyyyyyyyyyhhhh	chr2:10304339-10304617(+)$1	278	114	138	22.2135
eeee^^^^^^^^^^^^^^^^^^^^	chr19:42715375-42715671(-)$1	296	95	119	27.1541
eeee^^^^^^^^^^^^^^^^^^^^	chr22:42285995-42286205(+)$1	210	168	192	27.1541
ddddyyyyyyyyyyyyyyyydddd	chr14:23498406-23498676(-)$1	270	32	56	23.9512
ddddxxxxxxxxxxxxxxxddddg	chr16:23994564-23994799(+)$1	235	83	107	20.3537
eeee^^^^^^^^^^^^^^^^^^^e	chrX:23880722-23881068(-)$1	346	315	339	26.7251
gggg^^^^^^^^^^^^^^^^^^^g	chr17:15416703-15416999(-)$1	296	220	244	26.6192
eeee^^^^^^^^^^^^^^^^^^^^	chr22:29126046-29126316(-)$1	270	111	135	27.1541
!!bb^^^^^^^^^^^^^^^^^^^^	chr1:207859406-207859664(+)$1	258	140	164	26.6999
eeee^^^^^^^^^^^^^^^^^^^^	chr15:57233031-57233283(+)$1	252	80	104	27.1541
ggggggwwwwwwwwwwwwwwgggg	chr13:114539957-114540224(-)$1	267	139	163	18.8231
!ccc^^^^^^^^^^^^^^^^^^^^	chr17:79222821-79223106(-)$1	285	116	140	27.2852
gggg^^^^^^^^^^^^^^^^^^^^	chr8:126225851-126226173(+)$1	322	43	67	27.0837
e!!bbxxxxxxxxxxxxxxxbb22	chr21:39579257-39579529(+)$1	272	11	35	20.3560
c[bbyyyyyyyyyyyyyyyybb]c	chr6:36860930-36861267(+)$1	337	131	155	23.6324
dddd^^^^^^^^^^^^^^^^^^^^	chr2:3340750-3341013(-)$1	263	38	62	26.9439
eeee^^^^^^^^^^^^^^^^^^^e	chr3:171911380-171911648(+)$1	268	227	251	26.7251
iiiiixxxxxxxxxxxxxxxiiii	chr13:113377233-113377505(+)$1	272	5	29	20.6949
ddddyyyyyyyyyyyyyyyydddd	chr14:73568576-73568825(+)$1	249	145	169	23.9512
eccc^^^^^^^^^^^^^^^^^^^^	chr5:65327604-65327915(+)$1	311	232	256	27.1742
iiii^^^^^^^^^^^^^^^^^^^i	chr17:60067485-60067771(-)$1	286	162	186	26.5961
fffffxxxxxxxxxxxxxxxffff	chr9:140102955-140103319(+)$1	364	120	144	20.0960
ffff^^^^^^^^^^^^^^^^^^^^	chr1:142661866-142662142(+)$1	276	162	186	26.6597
ffff^^^^^^^^^^^^^^^^^^^^	chr8:100129629-100129988(+)$1	359	208	232	26.6597
eeeeexxxxxxxxxxxxxxxeeee	chr19:55645755-55645982(-)$1	227	69	93	21.1161
dddd^^^^^^^^^^^^^^^^^^^d	chr15:66878724-66878972(+)$1	248	145	169	26.4561
ffffffwwwwwwwwwwwwwwffff	chr8:90758239-90758596(-)$1	357	173	197	18.1234
#cccyyyyyyyyyyyyyyyyccc3	chr7:129081681-129081979(+)$1	298	78	102	24.8241
!ccc^^^^^^^^^^^^^^^^^^^^	chr4:160042418-160042688(+)$1	270	82	106	27.2852
dddd^^^^^^^^^^^^^^^^^^^d	chr11:3410828-3411040(+)$1	212	8	32	26.4561
ffff^^^^^^^^^^^^^^^^^^^f	chr22:21961241-21961481(+)$1	240	71	95	26.1247
eeeeyyyyyyyyyyyyyyyyeeee	chr3:172055551-172055876(+)$1	325	231	255	24.4187
[ccc^^^^^^^^^^^^^^^^^^^^	chr6:34304852-34305112(-)$1	260	205	229	27.2927
[cccxxxxxxxxxxxxxxxccccc	chr1:143185834-143186079(+)$1	245	12	36	21.3872
:ccc^^^^^^^^^^^^^^^^^^^^	chrX:79927742-79928014(-)$1	272	29	53	26.1128
hhhhyyyyyyyyyyyyyyyyhhhh	chr6:31771144-31771392(-)$1	248	207	231	22.2135
f[bbyyyyyyyyyyyyyyyybb]f	chr20:45855062-45855282(-)$1	220	164	188	23.4567
iiii^^^^^^^^^^^^^^^^^^^^	chr17:1258235-1258501(-)$1	266	187	211	27.0741
dddd^^^^^^^^^^^^^^^^^^^d	chr15:66878658-66878914(+)$1	256	211	235	26.4561
eeee[cccuuuuuuuuuuuuccce	chr10:131946351-131946648(+)$1	297	139	163	17.9246
ggg[cccvvvvvvvvvvvvvccc]	chr5:65311185-65311468(+)$1	283	53	77	17.5270
dddd^^^^^^^^^^^^^^^^^^^d	chr4:71770545-71770778(+)$1	233	139	163	26.4561
dddd^^^^^^^^^^^^^^^^^^^^	chr9:37235498-37235749(+)$1	251	87	111	26.9439
#cccyyyyyyyyyyyyyyyyccc2	chr14:99976925-99977207(+)$1	282	121	145	24.5451
"eeeeeuuuuuuuuuuuueeeee4	chr4:80145891-80146147(+)$1	256	166	190	17.5672
[eeeeeuuuuuuuuuuuueeeeec	chr16:23994100-23994324(+)$1	224	5	29	17.4626
eeeeyyyyyyyyyyyyyyyyeeee	chr20:43560347-43560639(+)$1	292	104	128	24.4187
[cccyyyyyyyyyyyyyyyyccc]	chr19:3680056-3680320(-)$1	264	129	153	24.8363
eeeeexxxxxxxxxxxxxxxeeee	chr1:29234331-29234618(+)$1	287	142	166	21.1161
[ccc^^^^^^^^^^^^^^^^^^^^	chr7:102052547-102052872(+)$1	325	285	309	27.2927
[ccc^^^^^^^^^^^^^^^^^^^^	chr5:159537971-159538261(-)$1	290	256	280	27.2927
!!bb^^^^^^^^^^^^^^^^^^^^	chr17:29422036-29422320(+)$1	284	91	115	26.6999
gggg^^^^^^^^^^^^^^^^^^^^	chr13:60712741-60713062(-)$1	321	58	82	27.0837

#otherMatches

#Seq PSSM
cucuacaaaacaaaaaauuaucag	chr19:1604147-1604445(-)$1	298	49	73	25.6380
CUCGUAUCCACACCCUCCCCUCCU	chr16:88588165-88588465(+)$1	300	143	167	26.8834
GUACuuuauugaacuuuuacucug	chr19:40481501-40481777(+)$1	276	193	217	26.5961
AUGAUCAUUGUCCUUUUCCUUCAU	chr7:75102114-75102366(-)$1	252	172	196	23.9512
ccucccuUUUuuuuuuuuuuuuuu	chr7:6429643-6429925(+)$1	282	78	102	27.2852
ccUUGUCUCCUAUUCCCUCUGCAG	chr19:56173670-56173928(+)$1	258	173	197	18.2493
agaucauaucaucuauccacaucu	chr2:10304339-10304617(+)$1	278	114	138	22.2135
ccucucucccuuccuuccuuccuu	chr19:42715375-42715671(-)$1	296	95	119	27.1541
guuucuuaccaauacaugaaccug	chr22:42285995-42286205(+)$1	210	168	192	27.1541
AUGUAAAAAagggaaagggaacau	chr14:23498406-23498676(-)$1	270	32	56	23.9512
GAGGUUUUUCAAAGUCUGUUCUCA	chr16:23994564-23994799(+)$1	235	83	107	20.3537
cacaccugacuaauuuuuuuuuuu	chrX:23880722-23881068(-)$1	346	315	339	26.7251
GGAGCUUCCUCUAUACUUAUCAAU	chr17:15416703-15416999(-)$1	296	220	244	26.6192
cuucucucuuccucucuccuuucu	chr22:29126046-29126316(-)$1	270	111	135	27.1541
uuccuucuccuuauuuucuuucuu	chr1:207859406-207859664(+)$1	258	140	164	26.6999
gcucuuuuuuuuuuuuuuuucuuu	chr15:57233031-57233283(+)$1	252	80	104	27.1541
ACCUGGAAGACAGCAGCACCCCAG	chr13:114539957-114540224(-)$1	267	139	163	18.8231
CUGUCUCCUCUUUCCUCCUCUUCC	chr17:79222821-79223106(-)$1	285	116	140	27.2852
cuguuucucucucuuucucucuuu	chr8:126225851-126226173(+)$1	322	43	67	27.0837
UGAAGAAACGACAGUAAUGCCUAG	chr21:39579257-39579529(+)$1	272	11	35	20.3560
UCGUAUccaaccaaaucccaauag	chr6:36860930-36861267(+)$1	337	131	155	23.6324
CCCGAUCUAAUAUUCCACUUUCAC	chr2:3340750-3341013(-)$1	263	38	62	26.9439
ACAUCAUCUUUUUAAUAACUAAAG	chr3:171911380-171911648(+)$1	268	227	251	26.7251
ugcuuuacuuuuuucuuuuuaagu	chr13:113377233-113377505(+)$1	272	5	29	20.6949
UAGCUUUCCUUUCAUAACCUGCUA	chr14:73568576-73568825(+)$1	249	145	169	23.9512
ACAUAAGAUUUAAAGAAAAAAAAA	chr5:65327604-65327915(+)$1	311	232	256	27.1742
gcauuaccuuacauaccuuuuuug	chr17:60067485-60067771(-)$1	286	162	186	26.5961
cccaggaguucaagaccagacugg	chr9:140102955-140103319(+)$1	364	120	144	20.0960
AUCUGcuucauacaaaaauuaacu	chr1:142661866-142662142(+)$1	276	162	186	26.6597
uguacaaaaaaaugaaauacugau	chr8:100129629-100129988(+)$1	359	208	232	26.6597
gcuaauuuuuuuaauuauuuuuag	chr19:55645755-55645982(-)$1	227	69	93	21.1161
AGCCUGGAAAACACAGAACGAAUG	chr15:66878724-66878972(+)$1	248	145	169	26.4561
auaggcaaugauuguaagaagcuu	chr8:90758239-90758596(-)$1	357	173	197	18.1234
acauguuucaguaucaauaaaugc	chr7:129081681-129081979(+)$1	298	78	102	24.8241
ccucuucuuuucucuuuuuuccuu	chr4:160042418-160042688(+)$1	270	82	106	27.2852
gagguuacuccuaauaucacacuc	chr11:3410828-3411040(+)$1	212	8	32	26.4561
CUUAUGUCAUCUUAUCCAUCCUUU	chr22:21961241-21961481(+)$1	240	71	95	26.1247
GGUAUUUUCAUCUCCUAACUUGCC	chr3:172055551-172055876(+)$1	325	231	255	24.4187
UACAAACAAUAAAAAUAAGAGAAC	chr6:34304852-34305112(-)$1	260	205	229	27.2927
UGCCAUCUGCUUUUCCUCAGGCCU	chr1:143185834-143186079(+)$1	245	12	36	21.3872
CAGGuuucuuucuuuuuucuuuuc	chrX:79927742-79928014(-)$1	272	29	53	26.1128
uggggcuauaugccaccaugccca	chr6:31771144-31771392(-)$1	248	207	231	22.2135
CCUCACGUAGUAUCAGAUCAGAUG	chr20:45855062-45855282(-)$1	220	164	188	23.4567
cugggcaacauaacgaaucccuua	chr17:1258235-1258501(-)$1	266	187	211	27.0741
AGCCUGGAAAACACAGAACGAAUG	chr15:66878658-66878914(+)$1	256	211	235	26.4561
ggcucaagcaauuucuccaccuua	chr10:131946351-131946648(+)$1	297	139	163	17.9246
acauacauucauguacauauuguc	chr5:65311185-65311468(+)$1	283	53	77	17.5270
UGUAUAUAGAACUUUAGAGCAUUU	chr4:71770545-71770778(+)$1	233	139	163	26.4561
uGUCCuuuuuuucuuuucuuucaa	chr9:37235498-37235749(+)$1	251	87	111	26.9439
UGUGCCCCCGCCCAUUCCCCCACC	chr14:99976925-99977207(+)$1	282	121	145	24.5451
augguuuacaaaagauccgaccag	chr4:80145891-80146147(+)$1	256	166	190	17.5672
CGGAGACAUCUUUUUCAUUCucug	chr16:23994100-23994324(+)$1	224	5	29	17.4626
aucuacacuauucuacccuaagau	chr20:43560347-43560639(+)$1	292	104	128	24.4187
augAACGAGCCAACAGACAAUCAC	chr19:3680056-3680320(-)$1	264	129	153	24.8363
acAGCCccuaauucaucuaagcug	chr1:29234331-29234618(+)$1	287	142	166	21.1161
cccuacaaaauauuuaaaaauaag	chr7:102052547-102052872(+)$1	325	285	309	27.2927
GUCAuuuuuuuuuuuuuuuuuuuu	chr5:159537971-159538261(-)$1	290	256	280	27.2927
uugccaacgcccccuuucccucuc	chr17:29422036-29422320(+)$1	284	91	115	26.6999
AAGACUAAUCCUUUCCUUUUUUCU	chr13:60712741-60713062(-)$1	321	58	82	27.0837

#DB
((((..................))	chr19:1604147-1604445(-)$1	1	49	73	25.6380
((.(....................	chr16:88588165-88588465(+)$1	1	143	167	26.8834
((((...................)	chr19:40481501-40481777(+)$1	1	193	217	26.5961
((((................))))	chr7:75102114-75102366(-)$1	1	172	196	23.9512
.(((....................	chr7:6429643-6429925(+)$1	1	78	102	27.2852
.(((((..............))))	chr19:56173670-56173928(+)$1	1	173	197	18.2493
((((................))))	chr2:10304339-10304617(+)$1	1	114	138	22.2135
((((....................	chr19:42715375-42715671(-)$1	1	95	119	27.1541
((((....................	chr22:42285995-42286205(+)$1	1	168	192	27.1541
((((................))))	chr14:23498406-23498676(-)$1	1	32	56	23.9512
((((...............)))))	chr16:23994564-23994799(+)$1	1	83	107	20.3537
((((...................)	chrX:23880722-23881068(-)$1	1	315	339	26.7251
((((...................)	chr17:15416703-15416999(-)$1	1	220	244	26.6192
((((....................	chr22:29126046-29126316(-)$1	1	111	135	27.1541
..((....................	chr1:207859406-207859664(+)$1	1	140	164	26.6999
((((....................	chr15:57233031-57233283(+)$1	1	80	104	27.1541
((((((..............))))	chr13:114539957-114540224(-)$1	1	139	163	18.8231
.(((....................	chr17:79222821-79223106(-)$1	1	116	140	27.2852
((((....................	chr8:126225851-126226173(+)$1	1	43	67	27.0837
(..((...............))..	chr21:39579257-39579529(+)$1	1	11	35	20.3560
(.((................)).)	chr6:36860930-36861267(+)$1	1	131	155	23.6324
((((....................	chr2:3340750-3341013(-)$1	1	38	62	26.9439
((((...................)	chr3:171911380-171911648(+)$1	1	227	251	26.7251
(((((...............))))	chr13:113377233-113377505(+)$1	1	5	29	20.6949
((((................))))	chr14:73568576-73568825(+)$1	1	145	169	23.9512
((((....................	chr5:65327604-65327915(+)$1	1	232	256	27.1742
((((...................)	chr17:60067485-60067771(-)$1	1	162	186	26.5961
(((((...............))))	chr9:140102955-140103319(+)$1	1	120	144	20.0960
((((....................	chr1:142661866-142662142(+)$1	1	162	186	26.6597
((((....................	chr8:100129629-100129988(+)$1	1	208	232	26.6597
(((((...............))))	chr19:55645755-55645982(-)$1	1	69	93	21.1161
((((...................)	chr15:66878724-66878972(+)$1	1	145	169	26.4561
((((((..............))))	chr8:90758239-90758596(-)$1	1	173	197	18.1234
.(((................))).	chr7:129081681-129081979(+)$1	1	78	102	24.8241
.(((....................	chr4:160042418-160042688(+)$1	1	82	106	27.2852
((((...................)	chr11:3410828-3411040(+)$1	1	8	32	26.4561
((((...................)	chr22:21961241-21961481(+)$1	1	71	95	26.1247
((((................))))	chr3:172055551-172055876(+)$1	1	231	255	24.4187
.(((....................	chr6:34304852-34305112(-)$1	1	205	229	27.2927
.(((...............)))))	chr1:143185834-143186079(+)$1	1	12	36	21.3872
.(((....................	chrX:79927742-79928014(-)$1	1	29	53	26.1128
((((................))))	chr6:31771144-31771392(-)$1	1	207	231	22.2135
(.((................)).)	chr20:45855062-45855282(-)$1	1	164	188	23.4567
((((....................	chr17:1258235-1258501(-)$1	1	187	211	27.0741
((((...................)	chr15:66878658-66878914(+)$1	1	211	235	26.4561
((((.(((............))))	chr10:131946351-131946648(+)$1	1	139	163	17.9246
(((.(((.............))).	chr5:65311185-65311468(+)$1	1	53	77	17.5270
((((...................)	chr4:71770545-71770778(+)$1	1	139	163	26.4561
((((....................	chr9:37235498-37235749(+)$1	1	87	111	26.9439
.(((................))).	chr14:99976925-99977207(+)$1	1	121	145	24.5451
.(((((............))))).	chr4:80145891-80146147(+)$1	1	166	190	17.5672
.(((((............))))))	chr16:23994100-23994324(+)$1	1	5	29	17.4626
((((................))))	chr20:43560347-43560639(+)$1	1	104	128	24.4187
.(((................))).	chr19:3680056-3680320(-)$1	1	129	153	24.8363
(((((...............))))	chr1:29234331-29234618(+)$1	1	142	166	21.1161
.(((....................	chr7:102052547-102052872(+)$1	1	285	309	27.2927
.(((....................	chr5:159537971-159538261(-)$1	1	256	280	27.2927
..((....................	chr17:29422036-29422320(+)$1	1	91	115	26.6999
((((....................	chr13:60712741-60713062(-)$1	1	58	82	27.0837

#PSSM
e : 0.22	d : 0.18	f : 0.10	[ : 0.10	! : 0.08	g : 0.08	i : 0.06	c : 0.03	: : 0.03	h : 0.03	# : 0.03	" : 0.01	
e : 0.23	c : 0.22	d : 0.18	g : 0.08	f : 0.08	i : 0.06	! : 0.05	h : 0.03	[ : 0.03	
e : 0.23	c : 0.20	d : 0.18	g : 0.08	f : 0.08	i : 0.06	b : 0.06	h : 0.03	[ : 0.01	! : 0.01	
e : 0.23	c : 0.20	d : 0.18	b : 0.08	f : 0.08	i : 0.06	g : 0.06	h : 0.03	a : 0.01	[ : 0.01	
^ : 0.55	y : 0.20	e : 0.08	x : 0.03	f : 0.03	g : 0.01	b : 0.01	i : 0.01	[ : 0.01	c : 0.01	
^ : 0.55	y : 0.20	x : 0.11	e : 0.05	c : 0.03	g : 0.01	f : 0.01	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	c : 0.03	u : 0.03	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	u : 0.03	c : 0.01	v : 0.01	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	u : 0.05	v : 0.01	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	u : 0.05	v : 0.01	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	u : 0.05	v : 0.01	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	u : 0.05	v : 0.01	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	u : 0.05	v : 0.01	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	u : 0.05	v : 0.01	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	u : 0.05	v : 0.01	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	u : 0.05	v : 0.01	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	u : 0.05	v : 0.01	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	u : 0.05	v : 0.01	
^ : 0.55	y : 0.20	x : 0.11	w : 0.05	e : 0.03	u : 0.01	v : 0.01	
^ : 0.55	y : 0.20	x : 0.08	w : 0.05	e : 0.03	d : 0.01	c : 0.01	u : 0.01	v : 0.01	
^ : 0.55	e : 0.11	c : 0.10	d : 0.06	b : 0.05	h : 0.03	f : 0.03	g : 0.01	i : 0.01	
^ : 0.55	e : 0.11	c : 0.10	d : 0.06	b : 0.05	h : 0.03	f : 0.03	g : 0.01	i : 0.01	
^ : 0.54	e : 0.11	c : 0.10	d : 0.08	h : 0.03	] : 0.03	f : 0.03	g : 0.01	2 : 0.01	i : 0.01	
^ : 0.37	d : 0.13	e : 0.13	f : 0.06	i : 0.05	g : 0.05	c : 0.05	h : 0.03	2 : 0.03	] : 0.03	3 : 0.01	4 : 0.01	

#score	1442.4307380706948
#seq	59
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_UTR_m2_run2.txt

#BEAR
beeeee!!ccclllccc333eeeee	chr2:74749949-74750206(-)$1	257	203	228	10.0900
b!!ccc[ddddmmmmddddccc22b	chr13:76378342-76378644(+)$1	302	157	182	9.6310
eeeeddddcccmmmmccc]ddddFF	chr12:26633974-26634223(-)$1	249	70	95	10.7170
ddd####ddddmmmmdddd22dddd	chr20:60715823-60716053(-)$1	230	200	225	10.7399
dd[ccc!!cccmmmmccc22ccc]d	chr17:62500240-62500455(-)$1	215	117	142	13.1360
fff[a!!ddddmmmmdddda]ffff	chr11:93464216-93464480(-)$1	264	208	233	10.1040
f[dddd!!cccmmmmccc333dddd	chr10:79800282-79800495(+)$1	213	44	69	13.5366
[ffffff[cccmmmmccc22fffff	chr12:123466038-123466286(+)$1	248	200	225	11.4300
:dddd####bbmmmmbb4444dddd	chr14:24606530-24606739(+)$1	209	4	29	9.6240
eeeegggggggmmmmggggggg]ee	chr19:5626318-5626600(+)$1	282	86	111	10.0320
ddd"""ccc[ammmma]ccc22ddd	chr2:242206154-242206372(-)$1	218	102	127	10.4698
dddddd[ddddmmmmdddd]dddd2	chr15:75194807-75195184(-)$1	377	258	283	10.4941
hhhhhhh[cccmmmmccc]hhhhhh	chr19:1206719-1207050(+)$1	331	184	209	10.3723
gggggg[bb[ammmma]bb]ggggg	chr20:30327089-30327360(+)$1	271	185	210	9.7236
ggggggg[cccmmmmccc]gggggg	chr2:136511644-136511948(+)$1	304	251	276	12.5305
f[dddd!!cccmmmmcccdddd333	chr14:24114250-24114452(+)$1	202	88	113	12.1323
d####ccc!!ammmma22ccc333d	chr3:132338211-132338490(-)$1	279	37	62	9.4175
ggg!!a[ddddmmmmdddd]a]ggg	chr16:8906828-8907070(+)$1	242	20	45	11.3543
ddd$$$$$cccmmmmccc22dddd]	chr12:103310802-103311087(-)$1	285	111	136	12.0202
ffff[ccccccmmmmccc]cccfff	chr19:58331023-58331323(+)$1	300	207	232	11.4796
ddccc]bbcccmmmmcccccc!!hh	chr17:56083604-56083817(-)$1	213	82	107	9.9680
ccc!!bb[cccmmmmccc]bb>>>>	chr5:137498731-137499056(-)$1	325	97	122	10.5890
hhhhhh!!cccmmmmccchhhhhhh	chr2:207025972-207026199(+)$1	227	200	225	10.4250
eeeeebb[cccmmmmccc]bb]eee	chr14:21546472-21546744(+)$1	272	134	159	11.2494
ddd!!a!!ccclllccc4444a22d	chr5:177631465-177631815(+)$1	350	136	161	10.1569
gggggg!!cccmmmmccc]gggggg	chr16:88724165-88724408(-)$1	243	216	241	12.9931
iiiiiii[cccmmmmccc]iiiiii	chr11:75146295-75146622(-)$1	327	4	29	12.6702
!!dddd!!cccmmmmccc22dddd2	chr17:30228481-30228800(-)$1	319	62	87	13.1386
[==========mmmm==========	chr9:140347382-140347615(-)$1	233	197	222	11.1873
ddddccc[cccmmmmccc]ccceee	chr12:133251922-133252202(-)$1	280	190	215	12.3463
e[ddddaddddmmmmdddd]a]ddd	chr16:18812648-18812905(-)$1	257	79	104	10.5990
b[a!!a!!cccmmmmccc22a]abb	chr9:131451715-131451980(+)$1	265	206	231	12.7182
!ccc[ddddbbmmmmbb333ddddc	chr11:62494680-62494948(-)$1	268	40	65	10.4143
dd[ccc!!cccmmmmccc22cccdd	chr3:48459512-48459795(-)$1	283	153	178	13.1692
fffff"""ccclllccc333fffff	chr9:134334535-134334808(+)$1	273	194	219	9.4918
ccc[bb!!cccmmmmccc22bbccc	chr12:69656227-69656484(+)$1	257	46	71	12.1228
ggg!!a[ddddmmmmdddd]a]ggg	chr16:8906756-8907028(+)$1	272	92	117	11.3543
h[dddd[ddddmmmmdddd4444dd	chr14:23945352-23945621(+)$1	269	80	105	10.7226
[eeeee!!cccmmmmccc22eeeee	chr6:24357686-24357911(-)$1	225	140	165	13.0135
gggggg!!cccmmmmccc]gggggg	chr2:201994396-201994713(+)$1	317	91	116	12.9931
b!!eeeeecccmmmmccc]eeeee2	chr19:45451856-45452084(+)$1	228	148	173	11.0888
edddd"""cccmmmmccc333dddd	chr6:56350015-56350357(-)$1	342	146	171	13.5013
[dddd"""cccmmmmccc22dddd]	chr16:69726168-69726457(+)$1	289	146	171	13.2485
cccdddd[cccmmmmccc]dddd::	chr20:31407708-31407935(+)$1	227	183	208	9.9515
!!iiiiiiiiimmmmiiiiiiiii2	chr6:126332365-126332657(+)$1	292	201	226	10.5387
===========mmmm==========	chr20:34319818-34320075(-)$1	257	3	28	11.1248
ii:eeeeecccmmmmccc22eeeee	chr2:216981281-216981543(+)$1	262	113	138	10.8515
eee"""ccc[ammmma]ccc333ee	chr11:82868103-82868424(+)$1	321	246	271	10.9377
!dddd"""cccmmmmccc4444ddd	chr8:21927633-21927894(+)$1	261	159	184	13.1886
eee[ddddcccmmmmccc4444ddd	chr17:49337830-49338169(+)$1	339	215	240	12.2011
ffffff[ddddmmmmdddd]fffff	chr3:156874633-156874953(-)$1	320	187	212	9.4968
[eeeee[ddddmmmmdddd]eeeee	chr1:48703279-48703543(+)$1	264	207	232	10.5848
ffff[a!!cccmmmmccc22affff	chr16:8941967-8942256(+)$1	289	186	211	12.6346
!ccc!!eeeeemmmmeeeee]ccc]	chr14:90867500-90867832(+)$1	332	12	37	9.0654
cc!!dddd!!ammmma22dddd]cc	chr19:19135421-19135711(-)$1	290	179	204	9.3419
eeee[ccc[bbmmmmbb]ccceeee	chr22:44328670-44328963(+)$1	293	100	125	9.3246
ddddddd[cccmmmmccc]dddd]d	chr7:148513673-148513942(-)$1	269	55	80	11.9328

#otherMatches

#Seq PSSM
GUCACUUCCUGGACCAGCCUGGUGA	chr2:74749949-74750206(-)$1	257	203	228	10.0900
GGAUUUCGGCUGUUGAGCCAAAGAC	chr13:76378342-76378644(+)$1	302	157	182	9.6310
UCUAAUGGGAUUGAUAUCAUCAUUG	chr12:26633974-26634223(-)$1	249	70	95	10.7170
CUGUCUUACUCUCUAGAGUCUCAGC	chr20:60715823-60716053(-)$1	230	200	225	10.7399
UAAGUGCUACUUUUCAGUUCUACCU	chr17:62500240-62500455(-)$1	215	117	142	13.1360
GGUGUAAUGGUCAUUACCAAGGCUU	chr11:93464216-93464480(-)$1	264	208	233	10.1040
AUUUUAAAGGCAGUUGUUGACUAAA	chr10:79800282-79800495(+)$1	213	44	69	13.5366
cucuuccuccAGUGAUGGCCGgaag	chr12:123466038-123466286(+)$1	248	200	225	11.4300
AGCUCUCAAUGAAGCCAACUUGAGC	chr14:24606530-24606739(+)$1	209	4	29	9.6240
CUUCUUUUUAGGCAAUUGAAGAUGA	chr19:5626318-5626600(+)$1	282	86	111	10.0320
AGUUUUGACCCAAGAGAGUUUUGCU	chr2:242206154-242206372(-)$1	218	102	127	10.4698
GAGGCCUACAGAGCCCUGUUGGCCA	chr15:75194807-75195184(-)$1	377	258	283	10.4941
GGGUCCAGCAUGGAGGUGGUGGACC	chr19:1206719-1207050(+)$1	331	184	209	10.3723
GGCGGUUGCGGUGCUCGGUCGCCGC	chr20:30327089-30327360(+)$1	271	185	210	9.7236
GGAuuuuuuuuuuugagauggaguc	chr2:136511644-136511948(+)$1	304	251	276	12.5305
UCUUCCAUCCAGGAUUGGGGAGUCA	chr14:24114250-24114452(+)$1	202	88	113	12.1323
UUAUGACAUUGUUUACUUUGUAUUA	chr3:132338211-132338490(-)$1	279	37	62	9.4175
AGGCCAGAUCAGCUUUGAUGUCUUU	chr16:8906828-8907070(+)$1	242	20	45	11.3543
UGCUGUUUGCAAACCUGCCUGUACC	chr12:103310802-103311087(-)$1	285	111	136	12.0202
CCGGUGAGGGCGCCUGCUGCUCCCG	chr19:58331023-58331323(+)$1	300	207	232	11.4796
CAGGCGGUCUGAAAACAGAGUGGUU	chr17:56083604-56083817(-)$1	213	82	107	9.9680
UCAAGGAGAAGGCUACUUGUCAGAA	chr5:137498731-137499056(-)$1	325	97	122	10.5890
CUCUUUGGAUCUGAUGAUGAGGAGG	chr2:207025972-207026199(+)$1	227	200	225	10.4250
GGGGCCAUCCUGAUGAGGCUGCGCU	chr14:21546472-21546744(+)$1	272	134	159	11.2494
GAGGAGGAGACACAGUUGGAGCAGC	chr5:177631465-177631815(+)$1	350	136	161	10.1569
GGCCGCCAGCUCCAGGGCAGUGGCC	chr16:88724165-88724408(-)$1	243	216	241	12.9931
CACCCCUGUGGGCCCCCGAGGGGGU	chr11:75146295-75146622(-)$1	327	4	29	12.6702
GGUAGGGCUGGGUCUCCGAACCUGA	chr17:30228481-30228800(-)$1	319	62	87	13.1386
GCCUUCUCCAGCUGCCUGGGGGAGG	chr9:140347382-140347615(-)$1	233	197	222	11.1873
CCCCAGUGCAUCCACAUGGACUGCC	chr12:133251922-133252202(-)$1	280	190	215	12.3463
AGGUGGCCUGCGCUUGUAGAGACUG	chr16:18812648-18812905(-)$1	257	79	104	10.5990
GACGAGACCUCAGGUGAGAGCAGCG	chr9:131451715-131451980(+)$1	265	206	231	12.7182
CCCGCGGCUGGGGAACCAAGGGCCU	chr11:62494680-62494948(-)$1	268	40	65	10.4143
UGAGGCUGUGGCCACCCAGUGCCCA	chr3:48459512-48459795(-)$1	283	153	178	13.1692
GCCCUGACUACCAGGUACCAAGGGC	chr9:134334535-134334808(+)$1	273	194	219	9.4918
CACCGGGAUcgugaccgagaccgug	chr12:69656227-69656484(+)$1	257	46	71	12.1228
AGGCCAGAUCAGCUUUGAUGUCUUU	chr16:8906756-8907028(+)$1	272	92	117	11.3543
AUUUUCAUCAUGUAGAUGAAACAGA	chr14:23945352-23945621(+)$1	269	80	105	10.7226
ACUGGCCACCGAAUCCGGAAGCUAG	chr6:24357686-24357911(-)$1	225	140	165	13.0135
GUCAGCCCUCAGAAAUGAAGUUGAC	chr2:201994396-201994713(+)$1	317	91	116	12.9931
ACCUUCCUCACCCAGGUGAAGGAAU	chr19:45451856-45452084(+)$1	228	148	173	11.0888
GCUCUCAUUGAUUGGUUAUAUAGAG	chr6:56350015-56350357(-)$1	342	146	171	13.5013
AUGUUUUCCUCAACAGAGCCAACAG	chr16:69726168-69726457(+)$1	289	146	171	13.2485
GCCGGGCGUGCGCGGGCAGGCCCUA	chr20:31407708-31407935(+)$1	227	183	208	9.9515
AGUUUAUUUUUAUACAAAAGUAGGA	chr6:126332365-126332657(+)$1	292	201	226	10.5387
UUUUUUUCUUCUCAGGAGGAAAAAA	chr20:34319818-34320075(-)$1	257	3	28	11.1248
ACAAGGAUGAGAUUGCUUUAGUCCU	chr2:216981281-216981543(+)$1	262	113	138	10.8515
CCGCGGUCAGCAUGUGGUGAAGCCG	chr11:82868103-82868424(+)$1	321	246	271	10.9377
AGCCAAAAUCGAAACCGACUACUGG	chr8:21927633-21927894(+)$1	261	159	184	13.1886
GGCCAGGCGGGCCUCCCCAAAAGCC	chr17:49337830-49338169(+)$1	339	215	240	12.2011
CCAGUGCUCUGAGAAUAGGUCACUG	chr3:156874633-156874953(-)$1	320	187	212	9.4968
CUGGCCAUCUUCUGCAAGAGGGUCA	chr1:48703279-48703543(+)$1	264	207	232	10.5848
AGGACGAAGUUUACAAACACCUCCU	chr16:8941967-8942256(+)$1	289	186	211	12.6346
AUGGCUGGCUUUGGCAAGCCCCCGG	chr14:90867500-90867832(+)$1	332	12	37	9.0654
UCCAGGUUAAGAAAGCCGAACCAGA	chr19:19135421-19135711(-)$1	290	179	204	9.3419
GAGGAGUGAGUGACAACGUACCCUU	chr22:44328670-44328963(+)$1	293	100	125	9.3246
ACUGUGCCUCUUGUCAGGUGUAUGA	chr7:148513673-148513942(-)$1	269	55	80	11.9328

#DB
((((((..(((...)))...)))))	chr2:74749949-74750206(-)$1	1	203	228	10.0900
(..(((.((((....)))))))..)	chr13:76378342-76378644(+)$1	1	157	182	9.6310
))))(((((((....))).))))((	chr12:26633974-26634223(-)$1	1	70	95	10.7170
(((....((((....))))..))))	chr20:60715823-60716053(-)$1	1	200	225	10.7399
((.(((..(((....)))..))).)	chr17:62500240-62500455(-)$1	1	117	142	13.1360
(((.(..((((....))))).))))	chr11:93464216-93464480(-)$1	1	208	233	10.1040
(.((((..(((....)))...))))	chr10:79800282-79800495(+)$1	1	44	69	13.5366
.((((((.(((....)))..)))))	chr12:123466038-123466286(+)$1	1	200	225	11.4300
.((((....((....))....))))	chr14:24606530-24606739(+)$1	1	4	29	9.6240
(((((((((((....))))))).))	chr19:5626318-5626600(+)$1	1	86	111	10.0320
(((...(((.(....).)))..)))	chr2:242206154-242206372(-)$1	1	102	127	10.4698
((((((.((((....)))).)))).	chr15:75194807-75195184(-)$1	1	258	283	10.4941
(((((((.(((....))).))))))	chr19:1206719-1207050(+)$1	1	184	209	10.3723
((((((.((.(....).)).)))))	chr20:30327089-30327360(+)$1	1	185	210	9.7236
(((((((.(((....))).))))))	chr2:136511644-136511948(+)$1	1	251	276	12.5305
(.((((..(((....)))))))...	chr14:24114250-24114452(+)$1	1	88	113	12.1323
(....(((..(....)..)))...)	chr3:132338211-132338490(-)$1	1	37	62	9.4175
(((..(.((((....)))).).)))	chr16:8906828-8907070(+)$1	1	20	45	11.3543
(((.....(((....)))..)))).	chr12:103310802-103311087(-)$1	1	111	136	12.0202
((((.((((((....))).))))))	chr19:58331023-58331323(+)$1	1	207	232	11.4796
))))).))(((....)))(((..((	chr17:56083604-56083817(-)$1	1	82	107	9.9680
(((..((.(((....))).))....	chr5:137498731-137499056(-)$1	1	97	122	10.5890
((((((..(((....))))))))))	chr2:207025972-207026199(+)$1	1	200	225	10.4250
(((((((.(((....))).)).)))	chr14:21546472-21546744(+)$1	1	134	159	11.2494
(((..(..(((...)))....)..)	chr5:177631465-177631815(+)$1	1	136	161	10.1569
((((((..(((....))).))))))	chr16:88724165-88724408(-)$1	1	216	241	12.9931
(((((((.(((....))).))))))	chr11:75146295-75146622(-)$1	1	4	29	12.6702
..((((..(((....)))..)))).	chr17:30228481-30228800(-)$1	1	62	87	13.1386
.((((((((((....))))))))))	chr9:140347382-140347615(-)$1	1	197	222	11.1873
))))(((.(((....))).)))(((	chr12:133251922-133252202(-)$1	1	190	215	12.3463
(.(((((((((....)))).).)))	chr16:18812648-18812905(-)$1	1	79	104	10.5990
(.(..(..(((....)))..).)))	chr9:131451715-131451980(+)$1	1	206	231	12.7182
.(((.((((((....))...)))))	chr11:62494680-62494948(-)$1	1	40	65	10.4143
((.(((..(((....)))..)))))	chr3:48459512-48459795(-)$1	1	153	178	13.1692
(((((...(((...)))...)))))	chr9:134334535-134334808(+)$1	1	194	219	9.4918
(((.((..(((....)))..)))))	chr12:69656227-69656484(+)$1	1	46	71	12.1228
(((..(.((((....)))).).)))	chr16:8906756-8907028(+)$1	1	92	117	11.3543
(.((((.((((....))))....))	chr14:23945352-23945621(+)$1	1	80	105	10.7226
.(((((..(((....)))..)))))	chr6:24357686-24357911(-)$1	1	140	165	13.0135
((((((..(((....))).))))))	chr2:201994396-201994713(+)$1	1	91	116	12.9931
(..((((((((....))).))))).	chr19:45451856-45452084(+)$1	1	148	173	11.0888
)((((...(((....)))...))))	chr6:56350015-56350357(-)$1	1	146	171	13.5013
.((((...(((....)))..)))).	chr16:69726168-69726457(+)$1	1	146	171	13.2485
)))((((.(((....))).))))..	chr20:31407708-31407935(+)$1	1	183	208	9.9515
..(((((((((....))))))))).	chr6:126332365-126332657(+)$1	1	201	226	10.5387
(((((((((((....))))))))))	chr20:34319818-34320075(-)$1	1	3	28	11.1248
)).((((((((....)))..)))))	chr2:216981281-216981543(+)$1	1	113	138	10.8515
(((...(((.(....).)))...))	chr11:82868103-82868424(+)$1	1	246	271	10.9377
.((((...(((....)))....)))	chr8:21927633-21927894(+)$1	1	159	184	13.1886
(((.(((((((....)))....)))	chr17:49337830-49338169(+)$1	1	215	240	12.2011
((((((.((((....)))).)))))	chr3:156874633-156874953(-)$1	1	187	212	9.4968
.(((((.((((....)))).)))))	chr1:48703279-48703543(+)$1	1	207	232	10.5848
((((.(..(((....)))..)))))	chr16:8941967-8942256(+)$1	1	186	211	12.6346
.(((..(((((....))))).))).	chr14:90867500-90867832(+)$1	1	12	37	9.0654
((..((((..(....)..)))).))	chr19:19135421-19135711(-)$1	1	179	204	9.3419
((((.(((.((....)).)))))))	chr22:44328670-44328963(+)$1	1	100	125	9.3246
(((((((.(((....))).)))).)	chr7:148513673-148513942(-)$1	1	55	80	11.9328

#PSSM
d : 0.19	e : 0.14	f : 0.12	g : 0.10	[ : 0.08	! : 0.08	b : 0.07	c : 0.07	h : 0.05	i : 0.03	: : 0.01	= : 0.01	
d : 0.24	e : 0.15	f : 0.10	g : 0.10	c : 0.10	[ : 0.08	! : 0.07	h : 0.03	i : 0.03	= : 0.03	# : 0.01	
d : 0.28	e : 0.15	f : 0.10	g : 0.10	c : 0.10	! : 0.05	[ : 0.03	h : 0.03	i : 0.03	= : 0.03	# : 0.01	a : 0.01	: : 0.01	
d : 0.22	e : 0.15	c : 0.10	! : 0.10	f : 0.08	g : 0.07	[ : 0.05	# : 0.03	" : 0.03	h : 0.03	i : 0.03	= : 0.03	$ : 0.01	
d : 0.26	e : 0.10	! : 0.10	c : 0.08	g : 0.08	[ : 0.07	f : 0.05	# : 0.03	" : 0.03	h : 0.03	i : 0.03	= : 0.03	a : 0.01	$ : 0.01	b : 0.01	
d : 0.21	c : 0.12	" : 0.10	e : 0.08	g : 0.08	a : 0.08	b : 0.05	# : 0.03	! : 0.03	f : 0.03	h : 0.03	i : 0.03	= : 0.03	$ : 0.01	] : 0.01	
! : 0.26	[ : 0.14	d : 0.10	c : 0.10	" : 0.07	b : 0.05	e : 0.05	# : 0.03	g : 0.03	i : 0.03	= : 0.03	f : 0.01	h : 0.01	$ : 0.01	a : 0.01	
! : 0.24	d : 0.24	[ : 0.15	c : 0.08	" : 0.07	e : 0.05	b : 0.03	= : 0.03	# : 0.01	g : 0.01	$ : 0.01	i : 0.01	
c : 0.63	d : 0.19	! : 0.03	= : 0.03	# : 0.01	g : 0.01	b : 0.01	i : 0.01	e : 0.01	[ : 0.01	
c : 0.59	d : 0.17	b : 0.05	[ : 0.05	! : 0.03	= : 0.03	g : 0.01	i : 0.01	e : 0.01	
c : 0.59	d : 0.17	a : 0.08	b : 0.05	= : 0.03	g : 0.01	i : 0.01	e : 0.01	
m : 0.94	l : 0.05	
m : 0.94	l : 0.05	
m : 0.94	l : 0.05	
m : 0.94	c : 0.05	
c : 0.59	d : 0.17	a : 0.08	b : 0.05	= : 0.03	g : 0.01	i : 0.01	e : 0.01	
c : 0.59	d : 0.17	b : 0.05	] : 0.05	2 : 0.03	= : 0.03	g : 0.01	i : 0.01	e : 0.01	
c : 0.57	d : 0.17	3 : 0.05	4 : 0.03	2 : 0.03	= : 0.03	g : 0.01	b : 0.01	i : 0.01	e : 0.01	] : 0.01	
] : 0.22	d : 0.21	2 : 0.19	3 : 0.08	c : 0.08	4 : 0.07	= : 0.03	g : 0.01	b : 0.01	h : 0.01	i : 0.01	e : 0.01	
2 : 0.21	c : 0.14	] : 0.12	3 : 0.08	d : 0.08	4 : 0.08	g : 0.07	h : 0.03	b : 0.03	i : 0.03	= : 0.03	e : 0.03	a : 0.01	
d : 0.17	c : 0.14	e : 0.08	4 : 0.08	g : 0.08	a : 0.08	3 : 0.05	f : 0.05	b : 0.05	2 : 0.03	] : 0.03	h : 0.03	i : 0.03	= : 0.03	
d : 0.24	e : 0.10	c : 0.10	f : 0.08	g : 0.08	] : 0.08	4 : 0.05	h : 0.03	3 : 0.03	i : 0.03	= : 0.03	2 : 0.01	! : 0.01	> : 0.01	a : 0.01	b : 0.01	
d : 0.28	e : 0.14	f : 0.10	g : 0.10	c : 0.07	3 : 0.05	2 : 0.03	] : 0.03	h : 0.03	i : 0.03	= : 0.03	! : 0.01	> : 0.01	a : 0.01	4 : 0.01	
d : 0.26	e : 0.17	f : 0.10	g : 0.10	h : 0.05	c : 0.05	2 : 0.03	] : 0.03	3 : 0.03	i : 0.03	= : 0.03	F : 0.01	> : 0.01	b : 0.01	: : 0.01	
d : 0.24	e : 0.15	f : 0.10	g : 0.10	2 : 0.07	h : 0.05	] : 0.05	c : 0.05	b : 0.03	= : 0.03	F : 0.01	3 : 0.01	> : 0.01	i : 0.01	: : 0.01	

#score	639.3735389003087
#seq	57
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF131ZWK_TAF15_transcript_m1_run2.txt

#BEAR
eeiiiiiiiii[bbmmmmbbiiiiiiiii:ffff	chr15:66892547-66892808(+)$1	261	102	136	12.6086
bb[ggggggg[cccmmmmccc]ggggggg]bb]f	chr19:34874882-34875143(+)$1	261	27	61	15.5392
d!!ccc[ddddcccmmmmccc22ddddccc22dd	chr2:236452348-236452638(+)$1	290	79	113	13.2409
$$$$$ccc!!ddddmmmmdddd4444ccc4444c	chr19:34874534-34874818(+)$1	284	150	184	12.9574
ggggggg####cccmmmmccc4444ggggggg22	chr19:34885259-34885512(+)$1	253	85	119	18.2244
eeedddd####cccmmmmccc4444dddd4444e	chr22:20095436-20095701(+)$1	265	117	151	15.8138
[a[dddd####cccmmmmccc4444dddd]a]ii	chr16:89967307-89967721(+)$1	414	308	342	17.0684
ggggggg"""bb[aooooooa]bb333ggggggg	chr19:19248596-19248863(-)$1	267	57	91	12.9824
=========[cccnnnnnccc333==========	chr10:81109717-81110037(+)$1	320	252	286	15.6550
a[ffffff"""cccmmmmccc22ffffff]a]cc	chr17:73890424-73890715(-)$1	291	30	64	15.9671
!!ggggggg!!ccclllccc333ggggggg333f	chr2:97558875-97559138(-)$1	263	83	117	15.8002
====[bb[bb[cccmmmmcccbb]bb]=======	chr16:89483959-89484234(-)$1	275	236	270	14.8122
"bb[iiiiiiiiiooooooiiiiiiiii]bb444	chr16:89360383-89360628(-)$1	245	27	61	11.9713
iiiiiiii!!bboooooobb]iiiiiiiii]a33	chr5:34191284-34191529(-)$1	245	9	43	13.2073
"""eeeee"""cccmmmmccc]eeeee333ccc]	chr19:28919972-28920263(-)$1	291	27	61	16.7316
iiiiiiii"""cccmmmmccc333iiiiiiiii:	chr16:89360643-89360877(-)$1	234	66	100	18.6948
Bggggggg[bbcccmmmmccc22bb22ggggggg	chrX:13332974-13333321(+)$1	347	39	73	14.4610
cc[ccc####ddddmmmmddddccccccbb22ii	chrX:13333353-13333624(+)$1	271	195	229	12.4299
=======[a"""bbmmmmbb]a]===========	chr22:20112238-20112491(+)$1	253	151	185	17.1700
============bbmmmmbb]============7	chr7:158659891-158660167(+)$1	276	167	201	15.7068
gggggggbb!!cccmmmmccc]bb333ggggggg	chr1:94372208-94372535(-)$1	327	146	180	16.2461
###ffffff!!cccmmmmccc]ffffff333===	chr19:34882454-34882727(+)$1	273	145	179	15.6708
ffffff"""a[cccmmmmccc]a333ffffffgg	chr16:1427321-1427571(-)$1	250	149	183	15.6077
!!ggggggg!!cccmmmmccc4444ggggggg]d	chr2:132044072-132044345(+)$1	273	14	48	18.0205
!bbeeeee####bbmmmmbb333eeeee]bbddd	chr19:34882215-34882449(+)$1	234	134	168	13.7843
!!eeeee"""ddddmmmmddddeeeee333dddd	chr19:34875170-34875418(+)$1	248	185	219	12.6587
gggg"""gggggggmmmmgggggggggggggg]a	chr16:2809950-2810274(+)$1	324	17	51	13.6177
=======####cccmmmmccc============6	chr16:31197828-31198039(+)$1	211	157	191	18.7989
####ccc####cccmmmmccc333ccc]eeeee2	chr19:34873555-34873816(+)$1	261	143	177	17.2249
gg!!eeeee!!cccmmmmccc]eeeee]gggggg	chr1:228275784-228276023(+)$1	239	33	67	15.6290
iiiiiii[a[bb[ammmma]bb]a22iiiiiiii	chr22:19939217-19939483(+)$1	266	18	52	14.2749
iiiii####a[bbnnnnnbb]a22iiiiiiiii2	chr10:99187644-99187950(+)$1	306	131	165	12.5422
iiiiiiii"""cccmmmmccc22iiiiiiiii]c	chr20:33508530-33508861(+)$1	331	155	189	19.1167
####dddd"""cccmmmmccc22dddd4444ddd	chr2:236517701-236517991(+)$1	290	124	158	15.8050
c==========cccmmmmccc55555========	chr13:114243482-114243751(+)$1	269	108	142	14.5891
[eeeee$$$$$cccmmmmccc22eeeee22a]a]	chr1:2325766-2326036(+)$1	270	156	190	15.3471
=======[ccc[bbmmmmbb333ccc]=======	chr1:2198680-2198956(+)$1	276	57	91	16.1607
ffff[bb[ccccccmmmmccc]ccc]bb]fffff	chr22:49945661-49945910(-)$1	249	126	160	12.8872
a[eeeee"""cccooooooccc]eeeee]abb]e	chr19:59083193-59083480(-)$1	287	181	215	12.6626
ccc[dddd"""cccmmmmccc333dddd]cccGG	chr22:49995098-49995361(-)$1	263	130	164	15.3435
bb[ggggggg[cccmmmmccc]ggggggg]bb]f	chr19:34874834-34875039(+)$1	205	75	109	15.5392
!ggggggg[cccbbmmmmbb]ccc]ggggggg]b	chr19:34876280-34876509(+)$1	229	91	125	14.2979
%%%===========mmmm===========333bb	chr11:65192390-65192620(+)$1	230	126	160	13.9172
$$$eeeee"""cccmmmmccc4444eeeee6666	chr1:228278706-228278969(+)$1	263	143	177	14.8567
gggggg[bb!!cccmmmmccc22bb333gggggg	chrX:13333905-13334160(+)$1	255	46	80	16.6228
hhhhhh[bb!!cccmmmmccc22bb]hhhhhhhh	chr19:59057371-59057630(+)$1	259	140	174	13.4284
[ccc"""ccc[cccooooooccc]ccc22ccc]a	chr1:26147624-26147896(+)$1	272	150	184	11.6797
[bb[dddd[a[cccmmmmccc22a]dddd]bbee	chr8:130453383-130453659(-)$1	276	61	95	14.4770

#otherMatches

#Seq PSSM
UCAUUCAUUGUGACAGGUGUGCAGUGGGUACUGG	chr15:66892547-66892808(+)$1	261	102	136	12.6086
CUGGGUUUCUAGGGGAGGCCUGAGGAGCCAAGAC	chr19:34874882-34875143(+)$1	261	27	61	15.5392
GGUAGUGUCAGGGCGGUAGCCAUCUGAGCUCACA	chr2:236452348-236452638(+)$1	290	79	113	13.2409
AAAGGGCCAGAGACCUGGGUCUACAGGGCAGACA	chr19:34874534-34874818(+)$1	284	150	184	12.9574
GUAUCUGGGGAGGAAGGAUCUGGUACAGGUAUGA	chr19:34885259-34885512(+)$1	253	85	119	18.2244
GCAGCCCUAGGACUGUGUGGUGGGUGGGCCCUCU	chr22:20095436-20095701(+)$1	265	117	151	15.8138
GACUCAGCCUGCACAGCCGUGACCCCUGACUGCA	chr16:89967307-89967721(+)$1	414	308	342	17.0684
CCCUGCUAUAUCGGGGUGUGUGGAACGGGCAGGG	chr19:19248596-19248863(-)$1	267	57	91	12.9824
AAAGGCAUUAUUCUCGGUGAAAUGAAUGUUUUUC	chr10:81109717-81110037(+)$1	320	252	286	15.6550
ugagcUCCAAAGCUCAGGAGCGGGGAGCUGGAAG	chr17:73890424-73890715(-)$1	291	30	64	15.9671
GAGUCCCUGGGUGAAUGUCAGAGCAGGGAUGUGG	chr2:97558875-97559138(-)$1	263	83	117	15.8002
GAGUGGGAGCCUGGUUCGCCAGCCCUGACUCCUU	chr16:89483959-89484234(-)$1	275	236	270	14.8122
CGUAAGGGAAGCCAACUCAGGCUUUCUUCACCAA	chr16:89360383-89360628(-)$1	245	27	61	11.9713
GGCCAGCUGGCAGUGGGAUGAGGCUGGCCCCCUC	chr5:34191284-34191529(-)$1	245	9	43	13.2073
cuauaggucaaggcugaagcccaccuggaaaggu	chr19:28919972-28920263(-)$1	291	27	61	16.7316
GACUUUUUUGGUGUCAGGACAAGUAAAAAGUCCU	chr16:89360643-89360877(-)$1	234	66	100	18.6948
AGCAUCCAAGUAAGAGUCCUUCAACGAUGGAUGC	chrX:13332974-13333321(+)$1	347	39	73	14.4610
UGACUCCCACAGUGAUUAUACUGAGCAAGGCGGU	chrX:13333353-13333624(+)$1	271	195	229	12.4299
ACCCUGGGCUUCUGACUUCACGGCCAGGGUCAGA	chr22:20112238-20112491(+)$1	253	151	185	17.1700
CUGCACUGAGGUUCUGCUGAGGCCUCAGUGCAGC	chr7:158659891-158660167(+)$1	276	167	201	15.7068
UACAACUCCAGAUCUAAUGGUAGGCUAAGUUGUG	chr1:94372208-94372535(-)$1	327	146	180	16.2461
GUAGGAUCUGGUACAGUUGUGAGGAUCUGGGUCU	chr19:34882454-34882727(+)$1	273	145	179	15.6708
GUCCUGAGGGGCCUGGGGAGGACGGGCAGGACCA	chr16:1427321-1427571(-)$1	250	149	183	15.6077
UUCAUCUGAGAGCAAAAAUGUAAAAUUGGAUGCA	chr2:132044072-132044345(+)$1	273	14	48	18.0205
UACCAUCUGGUACAGGAAUGAGGAGAUGUGUCUU	chr19:34882215-34882449(+)$1	234	134	168	13.7843
GGGUAGAGUUUGUCAGGUGACAUCUAUGAAACCA	chr19:34875170-34875418(+)$1	248	185	219	12.6587
uccuuaaucggggaaggcuuccugaaggaggugg	chr16:2809950-2810274(+)$1	324	17	51	13.6177
GGAUGUAUUUUAGUAGCCACUUGUAUCUUUUUCC	chr16:31197828-31198039(+)$1	211	157	191	18.7989
AGGAAUGAUAGCUGGACACAGGAACAUGGGGCCA	chr19:34873555-34873816(+)$1	261	143	177	17.2249
GUGGCUGUGACGGUGAGUGCCACACAGAGCUGCC	chr1:228275784-228276023(+)$1	239	33	67	15.6290
ccgcuccgaguugugcaaagaaguggggaguggg	chr22:19939217-19939483(+)$1	266	18	52	14.2749
AAUGGAAAGUGCUGGUAAAGGAGGCCAUUUUCUU	chr10:99187644-99187950(+)$1	306	131	165	12.5422
CUGGCCAGGGAGUGAAGAUAUGGUUGGUCAGAAA	chr20:33508530-33508861(+)$1	331	155	189	19.1167
UCCUAGUGAGGCAGCUUUCUGAGCACUUUUUCUU	chr2:236517701-236517991(+)$1	290	124	158	15.8050
AGGAGUCAGCUGCCAUACGGCCACCUGGCUGGCU	chr13:114243482-114243751(+)$1	269	108	142	14.5891
gugcagguucuggcuccugcccacugcgaacaug	chr1:2325766-2326036(+)$1	270	156	190	15.3471
AGAAUUCAGCUUGCGCGGGCUGCGGUGGAGUUCU	chr1:2198680-2198956(+)$1	276	57	91	16.1607
CUGGUGUCCUCUGGGUGGCUGUGAGAGCCCCAGC	chr22:49945661-49945910(-)$1	249	126	160	12.8872
ggucaagguaagaggaucaucugcuugagcccag	chr19:59083193-59083480(-)$1	287	181	215	12.6626
GAAAUGAUAGAGUCCCAAGGCCAAAUUAAUUUCC	chr22:49995098-49995361(-)$1	263	130	164	15.3435
CUGGGUUUCUAGGGGAGGCCUGAGGAGCCAAGAC	chr19:34874834-34875039(+)$1	205	75	109	15.5392
UCUUGGGUGAGGUCUUUGGAGCCUGGCCCAGGUA	chr19:34876280-34876509(+)$1	229	91	125	14.2979
AGGGAAUUCUCUGGGGCUUUGGGGAAUUUAGUGC	chr11:65192390-65192620(+)$1	230	126	160	13.9172
CAGUCCAUGAGGUGGAAUCACAAAAAUGGAAUUC	chr1:228278706-228278969(+)$1	263	143	177	14.8567
GAAGUUACAGAGUUAAGAAAUGAUGAUAAACUUC	chrX:13333905-13334160(+)$1	255	46	80	16.6228
GUUUGAGAAGGCUUAUCAGGGAGUUGUCAGACCU	chr19:59057371-59057630(+)$1	259	140	174	13.4284
GGAAGUGGCAGUAAGCACCGUUAGUGCAAUUUGU	chr1:26147624-26147896(+)$1	272	150	184	11.6797
cgcauuauggaggaguuuucugaugaugaagcug	chr8:130453383-130453659(-)$1	276	61	95	14.4770

#DB
))(((((((((.((....))))))))))).((((	chr15:66892547-66892808(+)$1	1	102	136	12.6086
((.(((((((.(((....))).))))))).)).)	chr19:34874882-34875143(+)$1	1	27	61	15.5392
(..(((.(((((((....)))..)))))))..))	chr2:236452348-236452638(+)$1	1	79	113	13.2409
.....(((..((((....))))....)))....)	chr19:34874534-34874818(+)$1	1	150	184	12.9574
(((((((....(((....)))....)))))))..	chr19:34885259-34885512(+)$1	1	85	119	18.2244
(((((((....(((....)))....))))....)	chr22:20095436-20095701(+)$1	1	117	151	15.8138
.(.((((....(((....)))....)))).).))	chr16:89967307-89967721(+)$1	1	308	342	17.0684
(((((((...((.(......).))...)))))))	chr19:19248596-19248863(-)$1	1	57	91	12.9824
(((((((((.(((.....)))...))))))))))	chr10:81109717-81110037(+)$1	1	252	286	15.6550
(.((((((...(((....)))..)))))).).))	chr17:73890424-73890715(-)$1	1	30	64	15.9671
..(((((((..(((...)))...)))))))...)	chr2:97558875-97559138(-)$1	1	83	117	15.8002
((((.((.((.(((....))))).)).)))))))	chr16:89483959-89484234(-)$1	1	236	270	14.8122
.((.(((((((((......))))))))).))...	chr16:89360383-89360628(-)$1	1	27	61	11.9713
((((((((..((......)).))))))))).)..	chr5:34191284-34191529(-)$1	1	9	43	13.2073
...(((((...(((....))).)))))...))).	chr19:28919972-28920263(-)$1	1	27	61	16.7316
((((((((...(((....)))...))))))))).	chr16:89360643-89360877(-)$1	1	66	100	18.6948
((((((((.(((((....)))..))..)))))))	chrX:13332974-13333321(+)$1	1	39	73	14.4610
((.(((....((((....))))))))))))..))	chrX:13333353-13333624(+)$1	1	195	229	12.4299
(((((((.(...((....)).).)))))))))))	chr22:20112238-20112491(+)$1	1	151	185	17.1700
((((((((((((((....)).)))))))))))).	chr7:158659891-158660167(+)$1	1	167	201	15.7068
(((((((((..(((....))).))...)))))))	chr1:94372208-94372535(-)$1	1	146	180	16.2461
...((((((..(((....))).))))))...)))	chr19:34882454-34882727(+)$1	1	145	179	15.6708
((((((...(.(((....))).)...))))))))	chr16:1427321-1427571(-)$1	1	149	183	15.6077
..(((((((..(((....)))....))))))).)	chr2:132044072-132044345(+)$1	1	14	48	18.0205
.(((((((....((....))...))))).)))))	chr19:34882215-34882449(+)$1	1	134	168	13.7843
..(((((...((((....)))))))))...))))	chr19:34875170-34875418(+)$1	1	185	219	12.6587
((((...(((((((....)))))))))))))).)	chr16:2809950-2810274(+)$1	1	17	51	13.6177
(((((((....(((....))))))))))))))).	chr16:31197828-31198039(+)$1	1	157	191	18.7989
....(((....(((....)))...))).))))).	chr19:34873555-34873816(+)$1	1	143	177	17.2249
((..(((((..(((....))).))))).))))))	chr1:228275784-228276023(+)$1	1	33	67	15.6290
(((((((.(.((.(....).)).)..))))))))	chr22:19939217-19939483(+)$1	1	18	52	14.2749
(((((....(.((.....)).)..))))))))).	chr10:99187644-99187950(+)$1	1	131	165	12.5422
((((((((...(((....)))..))))))))).)	chr20:33508530-33508861(+)$1	1	155	189	19.1167
....((((...(((....)))..))))....)))	chr2:236517701-236517991(+)$1	1	124	158	15.8050
)(((((((((((((....))).....))))))))	chr13:114243482-114243751(+)$1	1	108	142	14.5891
.(((((.....(((....)))..)))))..).).	chr1:2325766-2326036(+)$1	1	156	190	15.3471
(((((((.(((.((....))...))).)))))))	chr1:2198680-2198956(+)$1	1	57	91	16.1607
((((.((.((((((....))).))).)).)))))	chr22:49945661-49945910(-)$1	1	126	160	12.8872
(.(((((...(((......))).))))).))).)	chr19:59083193-59083480(-)$1	1	181	215	12.6626
(((.((((...(((....)))...)))).)))))	chr22:49995098-49995361(-)$1	1	130	164	15.3435
((.(((((((.(((....))).))))))).)).)	chr19:34874834-34875039(+)$1	1	75	109	15.5392
.(((((((.(((((....)).))).))))))).)	chr19:34876280-34876509(+)$1	1	91	125	14.2979
...(((((((((((....)))))))))))...))	chr11:65192390-65192620(+)$1	1	126	160	13.9172
...(((((...(((....)))....)))))....	chr1:228278706-228278969(+)$1	1	143	177	14.8567
((((((.((..(((....)))..))...))))))	chrX:13333905-13334160(+)$1	1	46	80	16.6228
((((((.((..(((....)))..)).))))))))	chr19:59057371-59057630(+)$1	1	140	174	13.4284
.(((...(((.(((......))).)))..))).)	chr1:26147624-26147896(+)$1	1	150	184	11.6797
.((.((((.(.(((....)))..).)))).))))	chr8:130453383-130453659(-)$1	1	61	95	14.4770

#PSSM
g : 0.12	= : 0.12	! : 0.10	i : 0.10	[ : 0.08	c : 0.06	# : 0.06	e : 0.04	b : 0.04	$ : 0.04	a : 0.04	" : 0.04	f : 0.04	d : 0.02	B : 0.02	% : 0.02	h : 0.02	
g : 0.16	= : 0.14	b : 0.10	i : 0.10	! : 0.08	e : 0.06	c : 0.06	# : 0.06	$ : 0.04	[ : 0.04	f : 0.04	a : 0.02	" : 0.02	% : 0.02	h : 0.02	
g : 0.18	= : 0.14	i : 0.12	[ : 0.08	e : 0.08	f : 0.06	b : 0.06	# : 0.06	! : 0.04	$ : 0.04	c : 0.04	" : 0.02	% : 0.02	h : 0.02	
g : 0.22	= : 0.16	i : 0.12	e : 0.12	f : 0.08	c : 0.06	[ : 0.06	d : 0.04	# : 0.04	$ : 0.02	! : 0.02	h : 0.02	
g : 0.20	i : 0.14	= : 0.14	e : 0.14	d : 0.10	c : 0.06	f : 0.06	[ : 0.04	" : 0.04	$ : 0.02	h : 0.02	
g : 0.20	= : 0.14	e : 0.14	i : 0.12	d : 0.10	c : 0.08	f : 0.06	b : 0.04	" : 0.04	# : 0.02	h : 0.02	
g : 0.18	= : 0.14	i : 0.12	e : 0.12	d : 0.10	[ : 0.06	" : 0.06	c : 0.04	f : 0.04	b : 0.04	# : 0.04	$ : 0.02	
g : 0.14	# : 0.14	i : 0.10	[ : 0.10	d : 0.08	" : 0.08	= : 0.08	e : 0.08	b : 0.06	c : 0.04	f : 0.04	$ : 0.02	
" : 0.22	# : 0.16	g : 0.10	= : 0.08	b : 0.08	[ : 0.06	c : 0.06	i : 0.04	! : 0.04	a : 0.04	d : 0.02	f : 0.02	e : 0.02	$ : 0.02	
" : 0.22	! : 0.18	# : 0.14	c : 0.08	g : 0.06	= : 0.06	a : 0.06	i : 0.04	[ : 0.04	b : 0.04	d : 0.02	$ : 0.02	
" : 0.16	[ : 0.14	! : 0.14	# : 0.12	c : 0.10	d : 0.08	b : 0.08	= : 0.06	i : 0.04	g : 0.02	$ : 0.02	
c : 0.68	b : 0.08	d : 0.06	[ : 0.04	= : 0.04	i : 0.02	" : 0.02	# : 0.02	g : 0.02	
c : 0.66	b : 0.14	d : 0.06	[ : 0.04	i : 0.02	o : 0.02	g : 0.02	= : 0.02	
c : 0.62	b : 0.12	d : 0.06	o : 0.06	a : 0.04	n : 0.04	g : 0.02	= : 0.02	
m : 0.83	o : 0.10	n : 0.04	l : 0.02	
m : 0.83	o : 0.10	n : 0.04	l : 0.02	
m : 0.83	o : 0.10	n : 0.04	l : 0.02	
m : 0.83	o : 0.10	n : 0.04	c : 0.02	
c : 0.62	b : 0.16	o : 0.08	d : 0.06	g : 0.02	a : 0.02	= : 0.02	
c : 0.64	b : 0.16	d : 0.06	o : 0.04	i : 0.02	g : 0.02	] : 0.02	= : 0.02	
c : 0.64	] : 0.10	d : 0.06	3 : 0.06	i : 0.04	a : 0.02	g : 0.02	b : 0.02	= : 0.02	
] : 0.18	2 : 0.18	3 : 0.14	4 : 0.10	i : 0.06	d : 0.06	= : 0.06	c : 0.06	b : 0.04	a : 0.04	g : 0.02	5 : 0.02	
2 : 0.20	3 : 0.14	4 : 0.12	c : 0.08	i : 0.06	g : 0.06	b : 0.06	e : 0.06	] : 0.06	= : 0.06	f : 0.02	a : 0.02	5 : 0.02	
4 : 0.12	e : 0.12	b : 0.10	3 : 0.10	i : 0.08	g : 0.08	c : 0.08	= : 0.08	d : 0.04	f : 0.04	] : 0.04	a : 0.04	2 : 0.02	5 : 0.02	
i : 0.12	4 : 0.12	e : 0.12	= : 0.10	c : 0.10	g : 0.08	b : 0.08	d : 0.06	3 : 0.06	f : 0.04	] : 0.04	2 : 0.02	5 : 0.02	
g : 0.14	e : 0.14	i : 0.12	d : 0.12	= : 0.10	3 : 0.08	c : 0.08	f : 0.04	2 : 0.04	] : 0.04	4 : 0.02	b : 0.02	5 : 0.02	
i : 0.14	g : 0.14	e : 0.14	d : 0.12	= : 0.12	c : 0.08	3 : 0.06	f : 0.06	] : 0.04	2 : 0.02	b : 0.02	h : 0.02	
g : 0.20	= : 0.16	i : 0.14	d : 0.08	e : 0.08	c : 0.06	f : 0.06	3 : 0.06	] : 0.04	4 : 0.02	b : 0.02	h : 0.02	2 : 0.02	
g : 0.25	= : 0.16	i : 0.12	] : 0.10	d : 0.06	3 : 0.06	c : 0.04	f : 0.04	e : 0.04	2 : 0.04	b : 0.02	4 : 0.02	h : 0.02	
g : 0.20	= : 0.14	] : 0.10	i : 0.10	3 : 0.08	c : 0.06	4 : 0.06	b : 0.06	f : 0.04	e : 0.04	: : 0.02	2 : 0.02	a : 0.02	h : 0.02	
g : 0.18	= : 0.14	b : 0.12	i : 0.08	f : 0.06	4 : 0.06	a : 0.06	3 : 0.06	c : 0.06	2 : 0.04	] : 0.02	d : 0.02	e : 0.02	6 : 0.02	h : 0.02	
g : 0.18	= : 0.16	b : 0.08	i : 0.08	f : 0.06	4 : 0.06	] : 0.06	c : 0.06	d : 0.06	2 : 0.04	3 : 0.04	a : 0.02	e : 0.02	6 : 0.02	h : 0.02	
] : 0.16	= : 0.16	g : 0.12	i : 0.10	d : 0.08	4 : 0.06	f : 0.04	c : 0.04	3 : 0.04	e : 0.04	2 : 0.02	a : 0.02	G : 0.02	b : 0.02	6 : 0.02	h : 0.02	
g : 0.12	= : 0.12	f : 0.10	d : 0.10	c : 0.06	2 : 0.06	e : 0.06	i : 0.06	] : 0.04	a : 0.04	6 : 0.04	b : 0.04	4 : 0.02	3 : 0.02	: : 0.02	7 : 0.02	G : 0.02	h : 0.02	

#score	721.8512719395106
#seq	48
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_UTR_m2_run2.txt

#BEAR
b==========oooooo==========:	chr19:892271-892517(-)$1	246	48	76	9.7379
E==========oooooo==========:	chrX:41193692-41193951(+)$1	259	223	251	9.1170
####bb!!cccnnnnnccc]bb333ddd	chr17:1388955-1389244(-)$1	289	217	245	13.5348
:==========nnnnn==========::	chr11:704716-704955(-)$1	239	112	140	12.0718
fff####ddddnnnnnddddffffff::	chr7:99055659-99055920(-)$1	261	187	215	10.4249
Fccc[ffffffnnnnnffffff]cccee	chr17:45773251-45773519(+)$1	268	200	228	11.9611
eeeeedddd[annnnna]dddd]eeeee	chr7:27153178-27153465(-)$1	287	2	30	11.2841
:==========nnnnn==========::	chr19:56154300-56154580(+)$1	280	232	260	12.0718
hhhh!!eeeeennnnneeeee4444hhh	chr1:155243079-155243353(-)$1	274	216	244	11.3800
ggggg"""cccnnnnnccc333gggggg	chr11:58346516-58346817(+)$1	301	243	271	14.1024
!!eeeeeddddnnnnndddd]eeeee]d	chr6:41673454-41673722(-)$1	268	55	83	12.2558
[ccc[ffffffnnnnnffffff22ccc]	chr14:75894874-75895220(+)$1	346	9	37	12.5769
cccdddd[cccnnnnnccc22dddd]cc	chr16:88922409-88922664(-)$1	255	117	145	12.6688
!!bb[bb[cccnnnnnccc]bbbb22cc	chr7:139477898-139478182(+)$1	284	99	127	12.2313
cceeeee[cccnnnnnccceeeee]ccc	chr6:41691307-41691568(-)$1	261	35	63	13.7186
dddccc!!cccnnnnnccc]ccc66666	chr7:228763-228982(+)$1	219	159	187	11.3207
cc!!gggggggnnnnnggggggg22ccc	chr17:80708591-80708874(+)$1	283	22	50	13.4698
$ccc[a!!cccnnnnnccc22a]ccccc	chr16:2551219-2551477(+)$1	258	126	154	13.9311
d"""gggggggnnnnnggggggg]dddd	chr2:20550290-20550540(-)$1	250	136	164	12.9902
[ffffff[cccnnnnnccc]ffffffcc	chr19:41306316-41306575(+)$1	259	211	239	13.4885
d####ffffffnnnnnffffff4444dd	chr1:1822250-1822562(-)$1	312	65	93	12.4921
###dddd[cccnnnnncccdddd22ccc	chr6:149638867-149639201(+)$1	334	280	308	12.7366
[bb[ccc[cccnnnnnccc]ccc]bb]c	chr14:24629783-24630035(+)$1	252	5	33	13.1956
ccdddd!!cccnnnnnccc333dddd::	chr16:1408165-1408429(+)$1	264	115	143	11.8699
dffffff[cccnnnnncccffffff444	chr2:219264650-219264886(+)$1	236	136	164	13.0547
bdddd[eeeeennnnneeeee]dddd]b	chr8:21914452-21914692(+)$1	240	142	170	10.9579
d####ffffffnnnnnffffff4444dd	chr1:161087973-161088296(+)$1	323	280	308	12.4921
eeeee!!ddddnnnnnddddeeeeehhh	chr3:13008995-13009284(-)$1	289	221	249	11.5302
e[ccc####bbnnnnnbbccceeeee::	chr19:59074107-59074388(+)$1	281	212	240	10.9200
hhhhhhh[cccnnnnnccc]hhhhhhhh	chr2:85199055-85199312(+)$1	257	207	235	11.0924
gggggbb!!bbnnnnnbb22bb]ggggg	chr21:46932559-46932814(-)$1	255	115	143	11.5536
cc[ccceeeeennnnneeeee]ccc]cc	chr7:229343-229601(+)$1	258	53	81	12.4687
fff[dddd[bbnnnnnbbddddffffff	chr16:1408040-1408338(+)$1	298	125	153	10.6750
!!eeeee[cccooooooccc22eeeee2	chr17:74497178-74497468(-)$1	290	118	146	9.4401
!eeeee[ddddnnnnnddddeeeee22c	chr1:6673917-6674205(-)$1	288	177	205	11.9175
cc[a[bb[cccnnnnnccc]bb]accc]	chr4:56411984-56412228(-)$1	244	30	58	13.5535
cc[gggggggooooooggggggg]ccc:	chr18:74533894-74534150(-)$1	256	180	208	9.0954
ddd[bb!!abbnnnnnbb]a22bbdddd	chr7:229320-229543(+)$1	223	60	88	10.9525
ee####eeeeeooooooeeeee333eee	chr2:242756992-242757219(+)$1	227	187	215	8.7381
a[ffffff[bbnnnnnbb]ffffffa]b	chr16:30935407-30935650(+)$1	243	30	58	11.7351
[ffffff[cccnnnnnccc]ffffff]d	chr6:111196677-111196925(+)$1	248	19	47	13.3912
Hbb!!ffffffnnnnnffffff333bb:	chr7:1577669-1577894(+)$1	225	44	72	10.8440
!eeeee[ddddnnnnndddd]eeeee33	chr16:85646872-85647092(+)$1	220	152	180	12.3829
eeeee[eeeeennnnneeeeeeeeeeee	chr2:196522158-196522406(+)$1	248	167	195	11.5750
fffccc[ddddnnnnndddd333ccc:i	chr8:144678706-144678937(-)$1	231	106	134	11.6679
d[bb[ffffffnnnnnffffff]bbddd	chr11:703389-703648(-)$1	259	190	218	11.4029
ddd[bb!!cccooooooccc22bb]ddd	chr2:230786614-230786884(-)$1	270	221	249	8.5918
iii[eeeee[annnnna]eeeeeiiiii	chr15:67391078-67391392(+)$1	314	88	116	12.6596
ccc[gggggggnnnnnggggggg22ccc	chr7:27153328-27153583(-)$1	255	35	63	13.3780
===========nnnnn===========f	chr16:4744605-4744865(+)$1	260	29	57	14.1135
!eeeee"""bbnnnnnbb333eeeee22	chr10:79800360-79800632(+)$1	272	80	108	12.2812
iiiiiiii[bbnnnnnbbiiiiiiiii2	chr12:52388977-52389240(+)$1	263	125	153	12.9447
cc[ccc[ddddoooooodddd]ccc]cc	chr14:69261295-69261551(-)$1	256	107	135	9.0047

#otherMatches

#Seq PSSM
GGGUCCCCGGGGUGGAGUCUGGGGACUG	chr19:892271-892517(-)$1	246	48	76	9.7379
GGAGGCCCUUUUGGCUUGGAGGGCUUCG	chrX:41193692-41193951(+)$1	259	223	251	9.1170
ggcgccaggccggccgggcAGGAUGCGC	chr17:1388955-1389244(-)$1	289	217	245	13.5348
GGGGGGUGGGGUCCCUCUCCACUCCUAA	chr11:704716-704955(-)$1	239	112	140	12.0718
UUUCCAGGCCGUUGACCGGUGAAGGCCU	chr7:99055659-99055920(-)$1	261	187	215	10.4249
CGUGUGGGCCGCGGCCCGGCCCUCACCA	chr17:45773251-45773519(+)$1	268	200	228	11.9611
CCAGUCGGCCCUGGGCGAGCCGUGCUGG	chr7:27153178-27153465(-)$1	287	2	30	11.2841
aaagggaggagcaucauuccuuccuuac	chr19:56154300-56154580(+)$1	280	232	260	12.0718
GGGAACGGGGCGGGAGGUCCCAGGGUCC	chr1:155243079-155243353(-)$1	274	216	244	11.3800
GGGGGAGACGGAAGAGCCGAGACCCCCG	chr11:58346516-58346817(+)$1	301	243	271	14.1024
ACGAGAGCUUCAGGUGGGAGCCUCUCCC	chr6:41673454-41673722(-)$1	268	55	83	12.2558
gcggagcgggcacggcgccugcagccgg	chr14:75894874-75895220(+)$1	346	9	37	12.5769
AGGGGUCACAGCCAGCCUGGAGGCCUCC	chr16:88922409-88922664(-)$1	255	117	145	12.6688
GCGCAGCGCGGGGGGACUGGGCGCAGGG	chr7:139477898-139478182(+)$1	284	99	127	12.2313
GCCUCCUGUGGGAGGACCAAGGAGCGCU	chr6:41691307-41691568(-)$1	261	35	63	13.7186
CCAAGACCGCCCACCAGGCAUCUUGUUC	chr7:228763-228982(+)$1	219	159	187	11.3207
CGAAGGCUGCUCAAGUAGCGGCCCCUGc	chr17:80708591-80708874(+)$1	283	22	50	13.4698
UGCAGCUAAGGGUGGGCCUGUGGUGCCC	chr16:2551219-2551477(+)$1	258	126	154	13.9311
CCAACGGUCGGUGUCCCCGGCUGAGGCA	chr2:20550290-20550540(-)$1	250	136	164	12.9902
ACCAGGGUCUUCGUCAGAGCCCUUGGAG	chr19:41306316-41306575(+)$1	259	211	239	13.4885
GGAGGCGUCUGAGGggcggacggaggcg	chr1:1822250-1822562(-)$1	312	65	93	12.4921
AAGGGUAAGCGGACAGCGCUGCCGGGCC	chr6:149638867-149639201(+)$1	334	280	308	12.7366
GCAAGGGUCCCGAUGAGGGUCCCAUGGC	chr14:24629783-24630035(+)$1	252	5	33	13.1956
gcugccccgcucccccagccccggcacc	chr16:1408165-1408429(+)$1	264	115	143	11.8699
CGGCCGGAGCGGAGCGCGCCCGGCCCCA	chr2:219264650-219264886(+)$1	236	136	164	13.0547
CCUCUCGGGCCUCUGUGGCCUCAGAGCG	chr8:21914452-21914692(+)$1	240	142	170	10.9579
GAGAGUCUUGGGAAAACCAAGGAUAGUU	chr1:161087973-161088296(+)$1	323	280	308	12.4921
CCGGGUGGCCGGGUGUCGGCCCCGGGAU	chr3:13008995-13009284(-)$1	289	221	249	11.5302
AACGGAAAGGCUGUUCGCCCGUGUGCAC	chr19:59074107-59074388(+)$1	281	212	240	10.9200
CCUGCUCAGUCACCCAGGCGGAGCAGGG	chr2:85199055-85199312(+)$1	257	207	235	11.0924
UGCUGCUAGGUGGGAGAUGAAGUCAGCA	chr21:46932559-46932814(-)$1	255	115	143	11.5536
AGACCUCCUGUGUUGAGCGGGAAGGCCU	chr7:229343-229601(+)$1	258	53	81	12.4687
GGGUAGGGACGCUGCACGCCUUCCCUCU	chr16:1408040-1408338(+)$1	298	125	153	10.6750
GCCCUGGAGCGGUGGUGCGCGGCCAGGA	chr17:74497178-74497468(-)$1	290	118	146	9.4401
agggcggacccgggaggggUCGCCCGGG	chr1:6673917-6674205(-)$1	288	177	205	11.9175
AGUCCGCAGUCCGAACGGCCGCCGUUGC	chr4:56411984-56412228(-)$1	244	30	58	13.5535
UAAUGUUCCUUUCCCUGGGGGCAGUGCA	chr18:74533894-74534150(-)$1	256	180	208	9.0954
ACAUGGCCGCUGAAAAAGACCUCCUGUG	chr7:229320-229543(+)$1	223	60	88	10.9525
UGCUAAGAGCUGUGAGAGGCUUGUUCAG	chr2:242756992-242757219(+)$1	227	187	215	8.7381
GACCCGGGACUGAGUGGGCCCCGGGCAG	chr16:30935407-30935650(+)$1	243	30	58	11.7351
gcugggcggcgggcggcgcggcccgggg	chr6:111196677-111196925(+)$1	248	19	47	13.3912
UGCAACCUGACCUGAAGUCAGGAUCGCG	chr7:1577669-1577894(+)$1	225	44	72	10.8440
CGGGGACGGGGUCCUCCCCCCUCCCCCC	chr16:85646872-85647092(+)$1	220	152	180	12.3829
CUGUGGAGGUUGGCGGAGCCUCGCGGGC	chr2:196522158-196522406(+)$1	248	167	195	11.5750
CCUGGCAGCAGAAGAACUGUGUAGCUAA	chr8:144678706-144678937(-)$1	231	106	134	11.6679
GAGGCCUGGCUGCUAAAGCCAGACCCCA	chr11:703389-703648(-)$1	259	190	218	11.4029
UGGGGGGAGCUAGUGGAAGUUACUGCCG	chr2:230786614-230786884(-)$1	270	221	249	8.5918
GUUGCUCAGCUGGGGGAUUUGGGGACGG	chr15:67391078-67391392(+)$1	314	88	116	12.6596
GCUGCUGCCCUCgggaagggcagggggc	chr7:27153328-27153583(-)$1	255	35	63	13.3780
UUGUGGUCUGGAAGGGCUGGACUGCGGG	chr16:4744605-4744865(+)$1	260	29	57	14.1135
AAACUAAAAACUUCAUGUGUCUGGUUGU	chr10:79800360-79800632(+)$1	272	80	108	12.2812
AGGGAGGCAUCUGCAUGGGUCUUCUUUU	chr12:52388977-52389240(+)$1	263	125	153	12.9447
GGGUGGUGAGAAUGCGCUCUCUUCGGCC	chr14:69261295-69261551(-)$1	256	107	135	9.0047

#DB
)((((((((((......)))))))))).	chr19:892271-892517(-)$1	1	48	76	9.7379
)((((((((((......)))))))))).	chrX:41193692-41193951(+)$1	1	223	251	9.1170
....((..(((.....))).))...)))	chr17:1388955-1389244(-)$1	1	217	245	13.5348
.((((((((((.....))))))))))..	chr11:704716-704955(-)$1	1	112	140	12.0718
(((....((((.....))))))))))..	chr7:99055659-99055920(-)$1	1	187	215	10.4249
)(((.((((((.....)))))).)))((	chr17:45773251-45773519(+)$1	1	200	228	11.9611
(((((((((.(.....).)))).)))))	chr7:27153178-27153465(-)$1	1	2	30	11.2841
.((((((((((.....))))))))))..	chr19:56154300-56154580(+)$1	1	232	260	12.0718
((((..(((((.....)))))....)))	chr1:155243079-155243353(-)$1	1	216	244	11.3800
(((((...(((.....)))...))))))	chr11:58346516-58346817(+)$1	1	243	271	14.1024
..(((((((((.....)))).))))).)	chr6:41673454-41673722(-)$1	1	55	83	12.2558
.(((.((((((.....))))))..))).	chr14:75894874-75895220(+)$1	1	9	37	12.5769
(((((((.(((.....)))..)))).))	chr16:88922409-88922664(-)$1	1	117	145	12.6688
..((.((.(((.....))).))))..))	chr7:139477898-139478182(+)$1	1	99	127	12.2313
(((((((.(((.....)))))))).)))	chr6:41691307-41691568(-)$1	1	35	63	13.7186
((((((..(((.....))).))).....	chr7:228763-228982(+)$1	1	159	187	11.3207
((..(((((((.....)))))))..)))	chr17:80708591-80708874(+)$1	1	22	50	13.4698
.(((.(..(((.....)))..).)))))	chr16:2551219-2551477(+)$1	1	126	154	13.9311
(...(((((((.....))))))).))))	chr2:20550290-20550540(-)$1	1	136	164	12.9902
.((((((.(((.....))).))))))))	chr19:41306316-41306575(+)$1	1	211	239	13.4885
(....((((((.....))))))....))	chr1:1822250-1822562(-)$1	1	65	93	12.4921
...((((.(((.....)))))))..)))	chr6:149638867-149639201(+)$1	1	280	308	12.7366
.((.(((.(((.....))).))).)).)	chr14:24629783-24630035(+)$1	1	5	33	13.1956
))((((..(((.....)))...))))..	chr16:1408165-1408429(+)$1	1	115	143	11.8699
(((((((.(((.....)))))))))...	chr2:219264650-219264886(+)$1	1	136	164	13.0547
(((((.(((((.....))))).)))).)	chr8:21914452-21914692(+)$1	1	142	170	10.9579
(....((((((.....))))))....))	chr1:161087973-161088296(+)$1	1	280	308	12.4921
(((((..((((.....))))))))))))	chr3:13008995-13009284(-)$1	1	221	249	11.5302
(.(((....((.....))))))))))..	chr19:59074107-59074388(+)$1	1	212	240	10.9200
(((((((.(((.....))).))))))))	chr2:85199055-85199312(+)$1	1	207	235	11.0924
(((((((..((.....))..)).)))))	chr21:46932559-46932814(-)$1	1	115	143	11.5536
((.((((((((.....))))).))).))	chr7:229343-229601(+)$1	1	53	81	12.4687
(((.((((.((.....))))))))))))	chr16:1408040-1408338(+)$1	1	125	153	10.6750
..(((((.(((......)))..))))).	chr17:74497178-74497468(-)$1	1	118	146	9.4401
.(((((.((((.....)))))))))..)	chr1:6673917-6674205(-)$1	1	177	205	11.9175
((.(.((.(((.....))).)).)))).	chr4:56411984-56412228(-)$1	1	30	58	13.5535
((.(((((((......))))))).))).	chr18:74533894-74534150(-)$1	1	180	208	9.0954
(((.((..(((.....)).)..))))))	chr7:229320-229543(+)$1	1	60	88	10.9525
((....(((((......)))))...)))	chr2:242756992-242757219(+)$1	1	187	215	8.7381
(.((((((.((.....)).))))))).)	chr16:30935407-30935650(+)$1	1	30	58	11.7351
.((((((.(((.....))).)))))).)	chr6:111196677-111196925(+)$1	1	19	47	13.3912
(((..((((((.....))))))...)).	chr7:1577669-1577894(+)$1	1	44	72	10.8440
.(((((.((((.....)))).)))))..	chr16:85646872-85647092(+)$1	1	152	180	12.3829
(((((.(((((.....))))))))))((	chr2:196522158-196522406(+)$1	1	167	195	11.5750
)))(((.((((.....))))...))).(	chr8:144678706-144678937(-)$1	1	106	134	11.6679
(.((.((((((.....)))))).)))))	chr11:703389-703648(-)$1	1	190	218	11.4029
(((.((..(((......)))..)).)))	chr2:230786614-230786884(-)$1	1	221	249	8.5918
(((.(((((.(.....).))))))))))	chr15:67391078-67391392(+)$1	1	88	116	12.6596
(((.(((((((.....)))))))..)))	chr7:27153328-27153583(-)$1	1	35	63	13.3780
(((((((((((.....)))))))))))(	chr16:4744605-4744865(+)$1	1	29	57	14.1135
.(((((...((.....))...)))))..	chr10:79800360-79800632(+)$1	1	80	108	12.2812
((((((((.((.....))))))))))).	chr12:52388977-52389240(+)$1	1	125	153	12.9447
((.(((.((((......)))).))).))	chr14:69261295-69261551(-)$1	1	107	135	9.0047

#PSSM
c : 0.16	d : 0.15	! : 0.11	e : 0.09	[ : 0.07	f : 0.05	b : 0.03	# : 0.03	: : 0.03	h : 0.03	g : 0.03	i : 0.03	E : 0.01	F : 0.01	$ : 0.01	a : 0.01	H : 0.01	= : 0.01	
c : 0.22	e : 0.13	f : 0.11	= : 0.09	# : 0.07	d : 0.07	! : 0.05	[ : 0.05	h : 0.03	g : 0.03	b : 0.03	i : 0.03	" : 0.01	
e : 0.16	f : 0.13	c : 0.11	= : 0.09	# : 0.09	d : 0.09	b : 0.07	[ : 0.07	h : 0.03	g : 0.03	i : 0.03	! : 0.01	" : 0.01	
e : 0.16	c : 0.15	[ : 0.11	= : 0.09	# : 0.09	d : 0.07	f : 0.07	g : 0.05	h : 0.03	b : 0.03	! : 0.03	" : 0.01	a : 0.01	i : 0.01	
e : 0.18	[ : 0.11	g : 0.11	c : 0.11	= : 0.09	d : 0.09	# : 0.07	f : 0.07	b : 0.05	! : 0.03	h : 0.01	i : 0.01	
f : 0.18	e : 0.13	b : 0.11	= : 0.09	d : 0.09	c : 0.09	g : 0.07	# : 0.05	! : 0.03	[ : 0.03	" : 0.01	a : 0.01	h : 0.01	i : 0.01	
f : 0.18	e : 0.16	! : 0.13	= : 0.09	d : 0.07	g : 0.07	[ : 0.07	b : 0.05	# : 0.03	" : 0.03	c : 0.01	h : 0.01	i : 0.01	
[ : 0.20	d : 0.16	! : 0.13	f : 0.13	e : 0.11	= : 0.09	g : 0.07	" : 0.03	# : 0.01	i : 0.01	
c : 0.32	d : 0.15	f : 0.11	e : 0.11	= : 0.09	g : 0.07	[ : 0.05	# : 0.01	! : 0.01	a : 0.01	" : 0.01	
c : 0.32	d : 0.13	b : 0.13	f : 0.11	= : 0.09	e : 0.09	g : 0.07	[ : 0.03	
c : 0.32	d : 0.13	b : 0.13	f : 0.11	= : 0.09	e : 0.09	g : 0.05	a : 0.03	o : 0.01	
n : 0.86	o : 0.13	
n : 0.86	o : 0.13	
n : 0.86	o : 0.13	
n : 0.86	o : 0.13	
n : 0.86	o : 0.13	
c : 0.28	b : 0.13	o : 0.11	d : 0.11	f : 0.11	e : 0.07	g : 0.07	= : 0.05	a : 0.03	
c : 0.32	d : 0.13	b : 0.13	f : 0.11	= : 0.09	e : 0.09	g : 0.07	] : 0.03	
c : 0.33	d : 0.16	f : 0.11	e : 0.11	= : 0.09	g : 0.07	] : 0.03	2 : 0.01	3 : 0.01	i : 0.01	
d : 0.18	] : 0.15	f : 0.15	e : 0.13	= : 0.09	g : 0.07	3 : 0.05	2 : 0.05	c : 0.05	a : 0.01	i : 0.01	
f : 0.20	e : 0.16	= : 0.09	2 : 0.09	b : 0.07	d : 0.07	3 : 0.07	g : 0.07	c : 0.05	] : 0.03	h : 0.01	i : 0.01	
f : 0.20	e : 0.18	= : 0.09	b : 0.07	d : 0.07	g : 0.07	3 : 0.05	] : 0.05	2 : 0.05	c : 0.03	4 : 0.01	a : 0.01	h : 0.01	i : 0.01	
e : 0.18	f : 0.11	] : 0.11	= : 0.09	g : 0.09	3 : 0.07	d : 0.07	c : 0.07	4 : 0.05	b : 0.05	2 : 0.01	h : 0.01	i : 0.01	
e : 0.18	f : 0.11	= : 0.09	c : 0.09	2 : 0.07	b : 0.07	3 : 0.05	4 : 0.05	d : 0.05	] : 0.05	g : 0.03	i : 0.03	6 : 0.01	h : 0.01	a : 0.01	
e : 0.16	c : 0.15	f : 0.11	= : 0.09	d : 0.09	2 : 0.07	3 : 0.05	4 : 0.05	g : 0.03	] : 0.03	b : 0.03	i : 0.03	6 : 0.01	h : 0.01	
c : 0.18	e : 0.15	d : 0.13	= : 0.09	f : 0.07	h : 0.05	] : 0.05	4 : 0.05	g : 0.03	2 : 0.03	b : 0.03	i : 0.03	6 : 0.01	a : 0.01	
c : 0.24	d : 0.13	: : 0.11	e : 0.09	] : 0.09	= : 0.05	h : 0.05	g : 0.03	2 : 0.03	i : 0.03	6 : 0.01	4 : 0.01	f : 0.01	b : 0.01	3 : 0.01	
c : 0.22	: : 0.16	d : 0.16	e : 0.07	h : 0.05	2 : 0.05	g : 0.03	] : 0.03	b : 0.03	f : 0.03	i : 0.03	6 : 0.01	4 : 0.01	3 : 0.01	

#score	629.0488442091772
#seq	53
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_transcript_m1_run1.txt

#BEAR
iiiddddyyyyyyyyyyyyyyyydddd]ii	chr2:69586270-69586541(-)$1	271	169	199	22.6155
gggg[a[a[attttttttttta]a]a]ggg	chr6:32943001-32943264(+)$1	263	51	81	24.6182
ccc[eeeeeuuuuuuuuuuuueeeee]ccc	chr11:93463073-93463332(+)$1	259	200	230	24.5877
ee[a[cccwwwwwwwwwwwwwwccca]eee	chr16:56968986-56969277(+)$1	291	129	159	24.3902
ddd[eeeeettttttttttteeeeedddd]	chr2:70456019-70456259(-)$1	240	166	196	21.9851
======bbxxxxxxxxxxxxxxxbb]====	chr8:141856626-141856894(-)$1	268	93	123	19.0521
c[bb[cccvvvvvvvvvvvvvcccbbccc]	chr11:63714293-63714572(+)$1	279	154	184	23.6076
====[ddddvvvvvvvvvvvvvdddd333=	chr12:56436036-56436335(+)$1	299	100	130	24.7967
eeee[cccxxxxxxxxxxxxxxxccceeee	chr19:1021470-1021719(+)$1	249	14	44	19.2079
&gggggggwwwwwwwwwwwwwwggggggg]	chr6:158353116-158353365(+)$1	249	154	184	23.9848
eee[eeeeevvvvvvvvvvvvveeeee]ee	chr10:62539846-62540090(+)$1	244	54	84	24.2829
eeeeecccxxxxxxxxxxxxxxxccc]eee	chrX:41205620-41205839(+)$1	219	52	82	19.1982
###bb[ccctttttttttttcccbb=====	chr1:245009865-245010117(-)$1	252	38	68	22.6537
bb[ffffffvvvvvvvvvvvvvffffff]b	chr1:145441070-145441320(+)$1	250	117	147	23.2149
:ccc[dddduuuuuuuuuuuudddd]ccc:	chr17:43163764-43164027(+)$1	263	34	64	22.6450
dddd[a[ccctttttttttttccc]a]ddd	chr1:32798214-32798451(+)$1	237	74	104	23.2462
ddddbb[bbtttttttttttbb]bb]dddd	chr6:36568820-36569106(+)$1	286	52	82	20.4537
ggggggg[auuuuuuuuuuuua]ggggggg	chr17:34171477-34171733(+)$1	256	211	241	25.5800
=========uuuuuuuuuuuu=========	chr7:158669199-158669482(+)$1	283	88	118	25.5253
=========vvvvvvvvvvvvv========	chr2:152267660-152267951(+)$1	291	27	57	25.3692
d[eeeeeyyyyyyyyyyyyyyyyeeeee22	chr6:43589771-43590029(-)$1	258	9	39	22.6761
#iiiiiiiiitttttttttttiiiiiiiii	chr6:126332065-126332333(+)$1	268	200	230	23.6530
d[ffffff[attttttttttta]ffffffd	chrX:12994418-12994705(+)$1	287	199	229	23.0876
hhhhhhhyyyyyyyyyyyyyyyyhhhhhhh	chr8:95780663-95780887(+)$1	224	83	113	21.1185
eee[ddddxxxxxxxxxxxxxxxdddd333	chr7:30639455-30639686(+)$1	231	28	58	18.8143
%%bb[dddduuuuuuuuuuuudddd]bb22	chr7:138943907-138944208(+)$1	301	202	232	22.0702
hhh!!ddddvvvvvvvvvvvvvdddd333h	chr19:53119967-53120259(-)$1	292	19	49	23.8838
a"""eeeeeuuuuuuuuuuuueeeee]a]e	chr16:24807081-24807333(+)$1	252	28	58	24.6417
::gggggggvvvvvvvvvvvvvggggggg:	chr5:137902558-137902802(-)$1	244	119	149	22.1425
hhccc!!ccctttttttttttccc22ccc:	chr9:86587636-86587864(-)$1	228	179	209	22.2906
[cccfffffftttttttttttffffff]cc	chr3:12650074-12650339(-)$1	265	87	117	22.3487
:ddddddddvvvvvvvvvvvvvdddd4444	chrX:23801650-23801897(+)$1	247	210	240	22.6451
chhhhhhhhuuuuuuuuuuuuhhhhhhhh2	chr1:234744034-234744296(-)$1	262	148	178	22.0647
ceeeee[bbuuuuuuuuuuuubb]eeeee:	chr1:29486905-29487143(-)$1	238	64	94	22.8810
ggg!!cccwwwwwwwwwwwwwwccc333gg	chrX:41198269-41198508(+)$1	239	86	116	24.7506
eeeee[cccvvvvvvvvvvvvvccc]eeee	chr19:6422128-6422397(-)$1	269	78	108	24.6529
eeeee!!ccctttttttttttccc]eeeee	chr11:43467369-43467618(+)$1	249	49	79	23.6303
pccceeeeeuuuuuuuuuuuueeeee:FFF	chr16:21987451-21987747(+)$1	296	243	273	21.1814
bb[ccc[bbtttttttttttbb]cccbb22	chr10:75005537-75005802(-)$1	265	31	61	21.5913
cc[ffffffvvvvvvvvvvvvvffffff]c	chr5:137897372-137897595(-)$1	223	38	68	23.8398
hhhhh[cccuuuuuuuuuuuuccc22hhhh	chr1:43220504-43220845(-)$1	341	171	201	23.5210
%%%a[cccwwwwwwwwwwwwwwccc]a555	chr1:32403118-32403360(-)$1	242	96	126	20.2718
ggggggg[bbtttttttttttbbggggggg	chr17:27050447-27050691(+)$1	244	127	157	23.2430
iiieeeeewwwwwwwwwwwwwweeeee:ee	chr16:74685899-74686147(-)$1	248	55	85	23.0510
ggggg!!ccctttttttttttccc22gggg	chr9:100774634-100774855(+)$1	221	62	92	23.9643
::cccyyyyyyyyyyyyyyyycccgggggg	chr3:172028478-172028804(+)$1	326	152	182	20.4543
ii[bbeeeeettttttttttteeeee]bb3	chr10:17738660-17738905(+)$1	245	119	149	22.4947
d!!eeeeewwwwwwwwwwwwwweeeeeddd	chr11:68358024-68358277(+)$1	253	114	144	23.5992
bb[ffffffvvvvvvvvvvvvvffffff]b	chr1:145441044-145441270(+)$1	226	143	173	23.2149
dddd[ddddvvvvvvvvvvvvvdddddddd	chr12:8082908-8083142(-)$1	234	159	189	23.1573
:ffffffwwwwwwwwwwwwwwffffffeee	chr12:57033002-57033243(-)$1	241	70	100	21.2911
gggg"""ccctttttttttttcccgggggg	chr7:151167601-151167858(-)$1	257	144	174	24.0852
fiiiiiiiiitttttttttttiiiiiiiii	chr7:104717251-104717496(+)$1	245	27	57	23.4396
$$$cccyyyyyyyyyyyyyyyyccc]bb]h	chr1:109893476-109893733(-)$1	257	52	82	21.9267
"ffffff!!attttttttttta]ffffff]	chr14:23791036-23791292(+)$1	256	132	162	23.3709
==!!eeeeevvvvvvvvvvvvveeeee444	chr3:195782047-195782297(-)$1	250	74	104	24.7382
eeeeddddwwwwwwwwwwwwwwdddd]eee	chr12:96676095-96676379(-)$1	284	118	148	23.2490

#otherMatches

#Seq PSSM
AGUCUUUGAGAAUACUUCUAACGAGAGCAC	chr2:69586270-69586541(-)$1	271	169	199	22.6155
CAUAGGGGGGgugugugugugugugugugu	chr6:32943001-32943264(+)$1	263	51	81	24.6182
CUUAUGCCCAAAACAGAGCAAGGGCAAAAG	chr11:93463073-93463332(+)$1	259	200	230	24.5877
GACCUGUGUUACUCUUUCUUUCCAUGAUCA	chr16:56968986-56969277(+)$1	291	129	159	24.3902
GAGGAGAUAUUAUUUCUAUUUGUCUCUCUA	chr2:70456019-70456259(-)$1	240	166	196	21.9851
UUUUUCCCAUUCCUUUUGUUGUAGGUGAAG	chr8:141856626-141856894(-)$1	268	93	123	19.0521
CAGUGUUCAAGAAAUAUGAUAGAAACGGGU	chr11:63714293-63714572(+)$1	279	154	184	23.6076
CUUGUGGCCGGAAAGGGACUGAGGCUGGGU	chr12:56436036-56436335(+)$1	299	100	130	24.7967
AGGGCUUAAAAUAGGUGUGACAGUAACCCU	chr19:1021470-1021719(+)$1	249	14	44	19.2079
UUGGCCACAGUGUUCAGUUCCAGUGGCUAU	chr6:158353116-158353365(+)$1	249	154	184	23.9848
UCUACCAUACCCAUUGACUAACUAUGGAAG	chr10:62539846-62540090(+)$1	244	54	84	24.2829
AACAUCUUUCUUUUAUUCAAAUUGAGCAUG	chrX:41205620-41205839(+)$1	219	52	82	19.1982
AAAGUAGGUAUGAUAGAUAAGCCACAAGAA	chr1:245009865-245010117(-)$1	252	38	68	22.6537
UCCCUGCAUCCUCAACAACAAUGUGCAGUG	chr1:145441070-145441320(+)$1	250	117	147	23.2149
AACUCUUGAACUCAUAAUUAAUCAAAAGUC	chr17:43163764-43164027(+)$1	263	34	64	22.6450
UCUUGUGUUCUAGAAGUCACCGAAGAGGAG	chr1:32798214-32798451(+)$1	237	74	104	23.2462
CUCACGCCAUAAAUACUAAUUGAUGAUGAG	chr6:36568820-36569106(+)$1	286	52	82	20.4537
cuaugguggggacagaggaggcggcuaugg	chr17:34171477-34171733(+)$1	256	211	241	25.5800
UACUUCUUGUAGUAAGUAAAGUAAGAAGUG	chr7:158669199-158669482(+)$1	283	88	118	25.5253
UUUUAAAAAGAUUGUACAUGUAUUUUUGAG	chr2:152267660-152267951(+)$1	291	27	57	25.3692
UAGAGUUGUGUAGAGGAAGAGGAAAUUCAG	chr6:43589771-43590029(-)$1	258	9	39	22.6761
AUUAAGAUUUUAAAUGAAAGCAAAUUUUGA	chr6:126332065-126332333(+)$1	268	200	230	23.6530
UUGCAAAGGUUAAUUAAAAAUGGUUUUGCA	chrX:12994418-12994705(+)$1	287	199	229	23.0876
CUUUCUAUGUUGCAAGUUAUUUUUAGGAGG	chr8:95780663-95780887(+)$1	224	83	113	21.1185
AAUAAACUAAAUUCAGAUAUAUAAGUUCAG	chr7:30639455-30639686(+)$1	231	28	58	18.8143
AACUGGGGUACGUUAAAUUAAACCUAAGAA	chr7:138943907-138944208(+)$1	301	202	232	22.0702
ucuaaucguucaacucccacuuaugaguga	chr19:53119967-53120259(-)$1	292	19	49	23.8838
caaaguugcgauaacuaguaagcgacagag	chr16:24807081-24807333(+)$1	252	28	58	24.6417
UACCAAUGUGGUUAAUAUGUAGACGUUGGG	chr5:137902558-137902802(-)$1	244	119	149	22.1425
GAGCAUUUAGUCUAAUAGUCUUUAUUUGCC	chr9:86587636-86587864(-)$1	228	179	209	22.2906
UCUUUUAUCCAAGGAAGAUAGGGAUGAGGA	chr3:12650074-12650339(-)$1	265	87	117	22.3487
UCGGUGCCUGUCACCUUCGCCAAGGCCAUU	chrX:23801650-23801897(+)$1	247	210	240	22.6451
ACGGAGAGCAGAGGAAGGGUGGUUCUUUGG	chr1:234744034-234744296(-)$1	262	148	178	22.0647
AGCUGGAUGUCAAAAUGGUACCAACCAGUA	chr1:29486905-29487143(-)$1	238	64	94	22.8810
UUCGUAGGUCUAUUUUUUGCCUCCUUUAGA	chrX:41198269-41198508(+)$1	239	86	116	24.7506
GGAAGGGCUGGGGGCCUAAAGAGGUGCUUU	chr19:6422128-6422397(-)$1	269	78	108	24.6529
auuguagauuuucuaagaacUAAUaauaau	chr11:43467369-43467618(+)$1	249	49	79	23.6303
acccauauccuaccaccuaaagauauaauu	chr16:21987451-21987747(+)$1	296	243	273	21.1814
UCAUUCAGCAAGCUAUUGACGCCGGAGAGG	chr10:75005537-75005802(-)$1	265	31	61	21.5913
GUCAUAUUUUAGUUGAAAUAAUAAAUGUAA	chr5:137897372-137897595(-)$1	223	38	68	23.8398
GCUGUGCUCAUAGGUCAGAACGGGAAACAG	chr1:43220504-43220845(-)$1	341	171	201	23.5210
ugagggcaggggaggguauggguguguggg	chr1:32403118-32403360(-)$1	242	96	126	20.2718
CUUCUCUACCCUAGGCCUGAUGGAGAGAAG	chr17:27050447-27050691(+)$1	244	127	157	23.2430
CAAAUCACUAUAGAUUGUUUUUGUGAUGAU	chr16:74685899-74686147(-)$1	248	55	85	23.0510
CUUUAGGAAGAAGAAUUUGGACUUGAUGAA	chr9:100774634-100774855(+)$1	221	62	92	23.9643
ACGGUUCAAAAAUCACCAACUACCUUUUAG	chr3:172028478-172028804(+)$1	326	152	182	20.4543
UAACUGGUGGAAAGGUGAAACCCAUCAAGG	chr10:17738660-17738905(+)$1	245	119	149	22.4947
AUCGAGUAUCAGACAUCAACUUUACUCUCA	chr11:68358024-68358277(+)$1	253	114	144	23.5992
UCCCUGCAUCCUCAACAACAAUGUGCAGUG	chr1:145441044-145441270(+)$1	226	143	173	23.2149
CCCUGCCUCUCAGAAUCCAAGUGAGGAGGG	chr12:8082908-8083142(-)$1	234	159	189	23.1573
CCUAGCAUGUAACUUUCCCUUUGUUAGCUU	chr12:57033002-57033243(-)$1	241	70	100	21.2911
AGCUUUGGCAGAAUCUUGGAAUGCAGCUUU	chr7:151167601-151167858(-)$1	257	144	174	24.0852
UAGUUUAUAUUAUGUUCUUUUGUAUAGAUU	chr7:104717251-104717496(+)$1	245	27	57	23.4396
ACAAGCAACUACACAGGAUAAAGCUAGAAU	chr1:109893476-109893733(-)$1	257	52	82	21.9267
AUGGGUCAGCGAUCACUACAAGGGGCCCGA	chr14:23791036-23791292(+)$1	256	132	162	23.3709
CUCUUGCUCUUAGAACUCACGUGAGUACCA	chr3:195782047-195782297(-)$1	250	74	104	24.7382
CCUGCUUUAUUUUUAUUUGUCCAAGGUUAG	chr12:96676095-96676379(-)$1	284	118	148	23.2490

#DB
(((((((................)))).))	chr2:69586270-69586541(-)$1	1	169	199	22.6155
((((.(.(.(...........).).).)))	chr6:32943001-32943264(+)$1	1	51	81	24.6182
(((.(((((............))))).)))	chr11:93463073-93463332(+)$1	1	200	230	24.5877
((.(.(((..............)))).)))	chr16:56968986-56969277(+)$1	1	129	159	24.3902
(((.(((((...........))))))))).	chr2:70456019-70456259(-)$1	1	166	196	21.9851
((((((((...............)).))))	chr8:141856626-141856894(-)$1	1	93	123	19.0521
(.((.(((.............)))))))).	chr11:63714293-63714572(+)$1	1	154	184	23.6076
((((.((((.............))))...)	chr12:56436036-56436335(+)$1	1	100	130	24.7967
((((.(((...............)))))))	chr19:1021470-1021719(+)$1	1	14	44	19.2079
.(((((((..............))))))).	chr6:158353116-158353365(+)$1	1	154	184	23.9848
(((.(((((.............))))).))	chr10:62539846-62540090(+)$1	1	54	84	24.2829
((((((((...............))).)))	chrX:41205620-41205839(+)$1	1	52	82	19.1982
...((.(((...........))))))))))	chr1:245009865-245010117(-)$1	1	38	68	22.6537
((.((((((.............)))))).)	chr1:145441070-145441320(+)$1	1	117	147	23.2149
.(((.((((............)))).))).	chr17:43163764-43164027(+)$1	1	34	64	22.6450
((((.(.(((...........))).).)))	chr1:32798214-32798451(+)$1	1	74	104	23.2462
((((((.((...........)).)).))))	chr6:36568820-36569106(+)$1	1	52	82	20.4537
(((((((.(............).)))))))	chr17:34171477-34171733(+)$1	1	211	241	25.5800
(((((((((............)))))))))	chr7:158669199-158669482(+)$1	1	88	118	25.5253
(((((((((.............))))))))	chr2:152267660-152267951(+)$1	1	27	57	25.3692
(.(((((................)))))..	chr6:43589771-43590029(-)$1	1	9	39	22.6761
.(((((((((...........)))))))))	chr6:126332065-126332333(+)$1	1	200	230	23.6530
(.((((((.(...........).)))))))	chrX:12994418-12994705(+)$1	1	199	229	23.0876
(((((((................)))))))	chr8:95780663-95780887(+)$1	1	83	113	21.1185
(((.((((...............))))...	chr7:30639455-30639686(+)$1	1	28	58	18.8143
..((.((((............)))).))..	chr7:138943907-138944208(+)$1	1	202	232	22.0702
(((..((((.............))))...)	chr19:53119967-53120259(-)$1	1	19	49	23.8838
(...(((((............))))).).)	chr16:24807081-24807333(+)$1	1	28	58	24.6417
..(((((((.............))))))).	chr5:137902558-137902802(-)$1	1	119	149	22.1425
))(((..(((...........)))..))).	chr9:86587636-86587864(-)$1	1	179	209	22.2906
.(((((((((...........)))))).))	chr3:12650074-12650339(-)$1	1	87	117	22.3487
.((((((((.............))))....	chrX:23801650-23801897(+)$1	1	210	240	22.6451
(((((((((............)))))))).	chr1:234744034-234744296(-)$1	1	148	178	22.0647
)(((((.((............)).))))).	chr1:29486905-29487143(-)$1	1	64	94	22.8810
(((..(((..............)))...))	chrX:41198269-41198508(+)$1	1	86	116	24.7506
(((((.(((.............))).))))	chr19:6422128-6422397(-)$1	1	78	108	24.6529
(((((..(((...........))).)))))	chr11:43467369-43467618(+)$1	1	49	79	23.6303
.)))(((((............))))).)))	chr16:21987451-21987747(+)$1	1	243	273	21.1814
((.(((.((...........)).)))))..	chr10:75005537-75005802(-)$1	1	31	61	21.5913
((.((((((.............)))))).)	chr5:137897372-137897595(-)$1	1	38	68	23.8398
(((((.(((............)))..))))	chr1:43220504-43220845(-)$1	1	171	201	23.5210
...(.(((..............))).)...	chr1:32403118-32403360(-)$1	1	96	126	20.2718
(((((((.((...........)))))))))	chr17:27050447-27050691(+)$1	1	127	157	23.2430
)))(((((..............))))).((	chr16:74685899-74686147(-)$1	1	55	85	23.0510
(((((..(((...........)))..))))	chr9:100774634-100774855(+)$1	1	62	92	23.9643
..(((................)))((((((	chr3:172028478-172028804(+)$1	1	152	182	20.4543
((.(((((((...........))))).)).	chr10:17738660-17738905(+)$1	1	119	149	22.4947
(..(((((..............))))))))	chr11:68358024-68358277(+)$1	1	114	144	23.5992
((.((((((.............)))))).)	chr1:145441044-145441270(+)$1	1	143	173	23.2149
((((.((((.............))))))))	chr12:8082908-8083142(-)$1	1	159	189	23.1573
.((((((..............))))))(((	chr12:57033002-57033243(-)$1	1	70	100	21.2911
((((...(((...........)))))))))	chr7:151167601-151167858(-)$1	1	144	174	24.0852
)(((((((((...........)))))))))	chr7:104717251-104717496(+)$1	1	27	57	23.4396
...(((................))).)).)	chr1:109893476-109893733(-)$1	1	52	82	21.9267
.((((((..(...........).)))))).	chr14:23791036-23791292(+)$1	1	132	162	23.3709
((..(((((.............)))))...	chr3:195782047-195782297(-)$1	1	74	104	24.7382
((((((((..............)))).)))	chr12:96676095-96676379(-)$1	1	118	148	23.2490

#PSSM
e : 0.14	d : 0.12	g : 0.10	c : 0.08	= : 0.08	: : 0.08	h : 0.07	i : 0.05	b : 0.05	# : 0.03	% : 0.03	& : 0.01	a : 0.01	[ : 0.01	p : 0.01	f : 0.01	$ : 0.01	" : 0.01	
e : 0.15	g : 0.12	i : 0.08	c : 0.08	d : 0.08	= : 0.08	h : 0.08	[ : 0.05	b : 0.05	% : 0.03	: : 0.03	f : 0.03	# : 0.01	" : 0.01	! : 0.01	$ : 0.01	
e : 0.15	g : 0.14	c : 0.10	[ : 0.10	d : 0.08	i : 0.07	= : 0.07	h : 0.07	f : 0.05	b : 0.03	! : 0.03	# : 0.01	" : 0.01	% : 0.01	$ : 0.01	
e : 0.15	g : 0.12	c : 0.12	f : 0.10	d : 0.08	[ : 0.07	= : 0.07	b : 0.07	h : 0.05	! : 0.05	a : 0.03	i : 0.03	" : 0.01	
e : 0.22	[ : 0.17	f : 0.12	g : 0.08	d : 0.07	c : 0.07	= : 0.05	b : 0.05	h : 0.05	i : 0.03	! : 0.03	" : 0.01	
e : 0.19	d : 0.15	c : 0.14	f : 0.12	g : 0.07	= : 0.05	[ : 0.05	! : 0.05	a : 0.03	i : 0.03	h : 0.03	b : 0.01	y : 0.01	" : 0.01	
e : 0.17	d : 0.15	c : 0.15	f : 0.12	[ : 0.08	g : 0.07	! : 0.05	= : 0.03	i : 0.03	h : 0.03	y : 0.03	b : 0.01	" : 0.01	
c : 0.24	e : 0.15	d : 0.14	y : 0.08	f : 0.08	b : 0.07	g : 0.03	[ : 0.03	= : 0.03	i : 0.03	a : 0.01	h : 0.01	w : 0.01	! : 0.01	
w : 0.14	c : 0.14	e : 0.12	d : 0.10	y : 0.08	x : 0.07	f : 0.07	b : 0.07	[ : 0.03	= : 0.03	i : 0.03	v : 0.01	a : 0.01	g : 0.01	h : 0.01	! : 0.01	
v : 0.22	u : 0.17	w : 0.14	y : 0.08	c : 0.08	t : 0.07	x : 0.07	a : 0.05	i : 0.03	f : 0.01	b : 0.01	e : 0.01	
t : 0.29	v : 0.22	u : 0.17	w : 0.14	y : 0.08	x : 0.07	
t : 0.29	v : 0.22	u : 0.17	w : 0.14	y : 0.08	x : 0.07	
t : 0.29	v : 0.22	u : 0.17	w : 0.14	y : 0.08	x : 0.07	
t : 0.29	v : 0.22	u : 0.17	w : 0.14	y : 0.08	x : 0.07	
t : 0.29	v : 0.22	u : 0.17	w : 0.14	y : 0.08	x : 0.07	
t : 0.29	v : 0.22	u : 0.17	w : 0.14	y : 0.08	x : 0.07	
t : 0.29	v : 0.22	u : 0.17	w : 0.14	y : 0.08	x : 0.07	
t : 0.29	v : 0.22	u : 0.17	w : 0.14	y : 0.08	x : 0.07	
t : 0.29	v : 0.22	u : 0.17	w : 0.14	y : 0.08	x : 0.07	
t : 0.29	v : 0.22	u : 0.17	w : 0.14	y : 0.08	x : 0.07	
t : 0.22	v : 0.22	u : 0.17	w : 0.14	y : 0.08	x : 0.07	b : 0.03	e : 0.01	c : 0.01	
v : 0.21	c : 0.15	w : 0.12	e : 0.08	y : 0.07	a : 0.07	x : 0.07	b : 0.07	d : 0.03	i : 0.03	f : 0.03	= : 0.01	h : 0.01	
c : 0.24	e : 0.15	d : 0.12	] : 0.10	f : 0.08	x : 0.07	y : 0.05	g : 0.03	= : 0.03	i : 0.03	b : 0.03	h : 0.01	
c : 0.28	e : 0.17	d : 0.15	f : 0.12	g : 0.07	b : 0.05	= : 0.03	i : 0.03	h : 0.03	a : 0.01	] : 0.01	
e : 0.19	d : 0.15	c : 0.14	f : 0.12	g : 0.10	b : 0.07	] : 0.05	2 : 0.05	= : 0.03	i : 0.03	h : 0.03	
e : 0.19	d : 0.14	] : 0.12	f : 0.12	g : 0.10	a : 0.05	c : 0.05	= : 0.05	2 : 0.05	i : 0.03	h : 0.03	b : 0.01	3 : 0.01	
e : 0.15	] : 0.14	g : 0.12	f : 0.12	d : 0.08	= : 0.07	c : 0.05	3 : 0.05	h : 0.05	b : 0.05	i : 0.03	4 : 0.01	: : 0.01	a : 0.01	
e : 0.15	g : 0.14	d : 0.08	f : 0.08	c : 0.07	= : 0.07	3 : 0.07	b : 0.07	] : 0.05	h : 0.05	i : 0.03	4 : 0.03	a : 0.01	F : 0.01	5 : 0.01	: : 0.01	
e : 0.17	g : 0.15	c : 0.08	d : 0.08	] : 0.08	= : 0.07	i : 0.05	3 : 0.05	2 : 0.05	h : 0.05	f : 0.03	4 : 0.03	F : 0.01	5 : 0.01	b : 0.01	
e : 0.17	g : 0.12	= : 0.08	d : 0.08	] : 0.07	: : 0.07	2 : 0.07	h : 0.07	i : 0.05	c : 0.05	b : 0.03	3 : 0.03	4 : 0.03	F : 0.01	5 : 0.01	

#score	1304.0541743470537
#seq	57
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_transcript_m1_run2.txt

#BEAR
ee!!ggggggg!!cccmmmmccc4444gggggggee	chr1:155234407-155234666(-)$1	259	9	45	15.2777
d[ccc[a[ccc[ddddmmmmdddd]ccc]a22cccd	chr12:132489520-132489758(+)$1	238	124	160	14.4128
[a"""ffffff[ddddoooooodddd]ffffff333	chr22:18314621-18314960(-)$1	339	171	207	12.6834
g[a!!dddd"""ddddmmmmddddddddaggggggg	chr1:19484222-19484463(-)$1	241	51	87	15.8595
ff####gggggggabbmmmmbb]a]ggggggg]fff	chr2:238990350-238990575(+)$1	225	88	124	11.8187
gggggggccc!!ddddoooooodddd333ccc7777	chr14:24113935-24114153(+)$1	218	83	119	11.7563
h"""ccc!!bb!!cccnnnnnccc22bb22ccc333	chr1:43220437-43220758(-)$1	321	249	285	11.8928
[ccc!!ccc!!eeeeemmmmeeeee]cccccc333d	chr13:103286198-103286442(+)$1	244	73	109	13.6391
ggggggccc"""ddddmmmmdddd22ccc333gggg	chr22:46709756-46710036(+)$1	280	216	252	16.6244
ccc[a[eeeee[ddddnnnnnddddeeeee]accc3	chrX:48934201-48934439(-)$1	238	184	220	11.8301
c[aa!!ccc!!eeeeemmmmeeeee22ccc22a]a]	chr4:1987421-1987706(-)$1	285	82	118	13.2087
ee!!ccc!!a####bboooooobb4444a22ccc]e	chr12:6657534-6657790(-)$1	256	72	108	12.3001
d[ffffff####ddddmmmmdddd4444ffffff]d	chr12:121176089-121176334(+)$1	245	177	213	15.0643
======="""bb!!bbmmmmbb22bb]=========	chr17:38418745-38418998(+)$1	253	29	65	12.1076
ddd[eeeee"""cccooooooccc333eeeee22dd	chr9:116997814-116998023(+)$1	209	35	71	13.4658
ccc[eeeee"""ddddllldddd4444eeeee333c	chr17:12914905-12915189(-)$1	284	42	78	15.0933
dd[ggggggg"""cccmmmmccc22gggggggdddd	chr11:65321305-65321583(-)$1	278	168	204	14.2398
eee####eeeee[cccmmmmccc]eeeeeeeeeeee	chr1:40627081-40627361(+)$1	280	59	95	11.8935
e[eeeee####eeeeemmmmeeeee]eeeee]eeee	chr20:62320861-62321101(+)$1	240	161	197	11.8794
==!!ccc[ccc[bboooooobb]ccc]ccc]=====	chr14:31163958-31164176(+)$1	218	169	205	11.5104
aeeeee[cccbb[cccmmmmccc]bb]ccc]eeeee	chr22:20100576-20100844(-)$1	268	66	102	11.6256
[iiiiiiiii!!ddddmmmmdddd]iiiiiiiii]a	chr22:50694928-50695137(-)$1	209	5	41	15.9755
ffff[dddd####ccclllccc4444ddddffffff	chr1:21076241-21076476(-)$1	235	6	42	12.7349
fffff!!dddd[ddddmmmmdddddddd333fffff	chr3:51673353-51673666(+)$1	313	267	303	13.0509
(eeeee[bb"""ddddmmmmddddbb]eeeee>>>>	chr8:53580478-53580774(-)$1	296	137	173	12.5912
d[ggggggg[bb[cccmmmmccc]bbggggggg22d	chr16:70569173-70569424(+)$1	251	43	79	13.1560
ccc!!eeeee[ddddnnnnndddd]eeeee22cccb	chr19:46518206-46518496(+)$1	290	105	141	11.4863
ffffccc!!a!!ddddnnnnndddd]a22ccc22ff	chr2:74718528-74718757(+)$1	229	118	154	12.1250
fffff[ccc"""cccnnnnnccc333ccc22fffff	chr3:48670990-48671230(-)$1	240	57	93	13.0205
iii!!bb[ccc[ddddlllddddccc]bb]iiiiii	chr4:3446465-3446700(+)$1	235	30	66	12.6092
================lll=================	chr6:110991535-110991797(-)$1	262	195	231	13.3938
c[ggggggg!!eeeeennnnneeeeeggggggg]cc	chr8:22885742-22885985(-)$1	243	159	195	11.4814
))iiiiiiiii[ddddoooooodddd]iiiiiiiii	chr11:118369936-118370237(+)$1	301	98	134	12.6189
b[ccc[ccc[a!!ccclllccc]a]ccc]ccc]bb:	chr16:88800215-88800479(-)$1	264	4	40	11.7374
dddd[dddd"""cccnnnnnccc333dddd]dddd9	chr2:86364117-86364347(+)$1	230	152	188	11.2110
##ggggggg"""ddddmmmmdddd4444gggggggd	chr4:2900123-2900360(+)$1	237	42	78	16.7132
gg"""ccc[gggggggmmmmgggggggcccgggggg	chr1:11888133-11888365(+)$1	232	84	120	12.6161
gggg!!bb####cccammmma]cccbb22ggggggg	chr4:152097946-152098199(-)$1	253	193	229	13.6163
[bb!!dddd"""cccmmmmccc333ddddbb22===	chr7:102004313-102004591(+)$1	278	173	209	12.4207
a!!ggggggg"""cccmmmmccc333ggggggg22a	chr12:49719286-49719541(+)$1	255	187	223	16.2110
ddccc[a"""a[ddddmmmmdddd]aa]ccc]dddd	chr17:7154411-7154642(-)$1	231	166	202	14.4053
!!ccc[dddd!!ddddmmmmdddd]dddd]ccc22d	chr12:53498790-53499030(+)$1	240	90	126	14.7765
e[ggggggg"""ddddoooooodddd]ggggggg22	chr1:53712555-53712816(-)$1	261	185	221	14.8017
dbb!!eeeeea[ddddmmmmdddd]a]eeeee4444	chr7:44796936-44797199(+)$1	263	213	249	14.5253
gggggg[a$$$$$cccooooooccc22a]ggggggg	chr21:45217687-45217901(+)$1	214	175	211	12.9924
eee!!eeeee!!ddddmmmmddddeeeee22eeeee	chr2:74754846-74755066(-)$1	220	96	132	14.0854
eee"""ccc"""ddddmmmmddddccc]eeeee22a	chr7:65551630-65551835(+)$1	205	40	76	15.6079
===========a[cccmmmmccc]a22=========	chr19:7709441-7709702(+)$1	261	198	234	15.0454
!!ccc!!ccc"""cccmmmmccc333ccc22cccee	chr11:212511-212807(+)$1	296	194	230	15.5750
ccc####dddd!!cccmmmmccc22ddddcccccc]	chr17:78292982-78293213(+)$1	231	36	72	13.3020
gggg[ffffff[accclllccc]a]ffffff333gg	chr17:4455435-4455687(-)$1	252	61	97	11.8497
cbba[dddd"""ddddmmmmdddd333dddd]a]bb	chr15:34875643-34875919(-)$1	276	59	95	14.8662
[ffffff[bb!!ddddmmmmdddd22bb]ffffffa	chr16:69402194-69402466(-)$1	272	223	259	13.1989
ccc!!eeeee[a[cccmmmmccca]eeeeeccc22g	chr14:24650711-24650921(-)$1	210	70	106	14.0235
e"""dddd####ddddmmmmdddd]dddd22eeeee	chr19:7688589-7688829(-)$1	240	25	61	14.7519

#otherMatches

#Seq PSSM
UACCUUUUUUAAGGCUCAGAAGCAAUGUAGAGAAUA	chr1:155234407-155234666(-)$1	259	9	45	15.2777
AUGAAGCUGUACGAAGGCGCCUUCCUGCCGAGUUCU	chr12:132489520-132489758(+)$1	238	124	160	14.4128
GUGGAAGGAGGCCGUGCGGAUCCAUGCCCUUCUGAA	chr22:18314621-18314960(-)$1	339	171	207	12.6834
GGCAGCUGAUCAGUGCUCAUGUGCUCAGGCGGGUGG	chr1:19484222-19484463(-)$1	241	51	87	15.8595
ACCAUCAUGCUGGCCAACAAUGAGACUGGCAUUGUC	chr2:238990350-238990575(+)$1	225	88	124	11.8187
UUCUUCCCUUUGCCCAGUUUCAUGGGAAUGAGUCUC	chr14:24113935-24114153(+)$1	218	83	119	11.7563
CUGUUGUCAGGGAGCCAGGCAGGUCACCCCACAUUU	chr1:43220437-43220758(-)$1	321	249	285	11.8928
AAGCAAACUUCAAUGGCUUUCCAUUUAGUGCUGACG	chr13:103286198-103286442(+)$1	244	73	109	13.6391
AGGCCUUGGAGACUGUUUCUGCAGAACCACUUAGGC	chr22:46709756-46710036(+)$1	280	216	252	16.6244
GUGAGAGGGAUAGUCCUCCCUGGGCAUCCCGCCACC	chrX:48934201-48934439(-)$1	238	184	220	11.8301
GGGCACUGGCGAGGACUCCUGUUUUGUCCACAGAUG	chr4:1987421-1987706(-)$1	285	82	118	13.2087
UCUCUAGGAGGGAGUAUGAUUUUGAGGACGACUGUG	chr12:6657534-6657790(-)$1	256	72	108	12.3001
UGGGGGUGGCACCUUGAGGCCAGGCCCGCGCCCCGG	chr12:121176089-121176334(+)$1	245	177	213	15.0643
AGAGCCGAAAGGAAGCAGUGGUGGCUAUGGCUCUGG	chr17:38418745-38418998(+)$1	253	29	65	12.1076
UGUAACCUUCUUUGCUGGUGUGUACUUAGGGUGAAC	chr9:116997814-116998023(+)$1	209	35	71	13.4658
CAGCUCACCUUGUGCAGUGUGUAAUUUGGUGGUAUC	chr17:12914905-12915189(-)$1	284	42	78	15.0933
CGCGGUGCGGGCAGCCCUGAGGCCACCGCGCCCGCC	chr11:65321305-65321583(-)$1	278	168	204	14.2398
gccggagauggagucgagacugagUCCAUGGUUCGG	chr1:40627081-40627361(+)$1	280	59	95	11.8935
CUGGGGUAAGGCGGUCUGGUGACUGAGCCCCCGCCC	chr20:62320861-62321101(+)$1	240	161	197	11.8794
CAUUUUCAAUUGAGUAAACUUUGAAUAGAAUUGUUG	chr14:31163958-31164176(+)$1	218	169	205	11.5104
GCCACGGUGCCAUCUCUUCAGAGUUGAGUAAUGUGG	chr22:20100576-20100844(-)$1	268	66	102	11.6256
GGCUGUGCCCAUGCUUGGGAGGGUGGGGCACAGUGG	chr22:50694928-50695137(-)$1	209	5	41	15.9755
AGGAACUCCGACCCACCUGGUGCAGAGGAGUCUUGU	chr1:21076241-21076476(-)$1	235	6	42	12.7349
UUCCUACAGGGCGUUGGCUUCAACCCUUUCCAGGAG	chr3:51673353-51673666(+)$1	313	267	303	13.0509
GACCAGAUGAUUGCUAGCUGUGGCCGACUGGUGAAU	chr8:53580478-53580774(-)$1	296	137	173	12.5912
GAGGGUCAGAUGGUCCAAGUGGAGUACUGAUCUGCU	chr16:70569173-70569424(+)$1	251	43	79	13.1560
CGCGCCUGGCGUCCGAGAAGCGGGAGCUGGAGGCGC	chr19:46518206-46518496(+)$1	290	105	141	11.4863
UUGCGCAAGGUUGGGGAUUGGCCCCUCAGUGCCCGC	chr2:74718528-74718757(+)$1	229	118	154	12.1250
GGGCCUGGAAAAAUCAGGUAGGUAACUCUCUGGUCC	chr3:48670990-48671230(-)$1	240	57	93	13.0205
GUGCCGGGUGGACCCACCGUGGGCCGGCCUCACUGC	chr4:3446465-3446700(+)$1	235	30	66	12.6092
GUUUUAUAUAGGUAUGGAGCAUAUUUAUAUAAAAUA	chr6:110991535-110991797(-)$1	262	195	231	13.3938
GCGGGGGCACAGGGCACUCUCUGCCCUGCCCCCUCC	chr8:22885742-22885985(-)$1	243	159	195	11.4814
AUUUGAAGUUUUCAGAAGAGUGUUUGUGGACUUUGA	chr11:118369936-118370237(+)$1	301	98	134	12.6189
GACCCUCUCCCAGGCAGGAUGCAGUGAGUGGGACCC	chr16:88800215-88800479(-)$1	264	4	40	11.7374
GGUCACCAUGAAGCAUAGUUUGUAAAAUGGAGACCU	chr2:86364117-86364347(+)$1	230	152	188	11.2110
AUUCUCCGGAACCAUGGGCUCGUGUCAGUUGGAGAG	chr4:2900123-2900360(+)$1	237	42	78	16.7132
AGUUUGGAAGCUGGGGUUCCUUCCAGCUCCCUGGAU	chr1:11888133-11888365(+)$1	232	84	120	12.6161
CAGGCUCUUGGAGGCCUAAUGAGCUGGUUCCUGCUG	chr4:152097946-152098199(-)$1	253	193	229	13.6163
GGGCCGGGUAGAGGCUCGAGCCGGGACCCCCGAGCG	chr7:102004313-102004591(+)$1	278	173	209	12.4207
GGGGGCACUGAGGGGGGCAUCCUGAGCAGUGCUGAC	chr12:49719286-49719541(+)$1	255	187	223	16.2110
UGGCGGUGUUGGGGACAUCUGUCCGUGGUGCUCAGG	chr17:7154411-7154642(-)$1	231	166	202	14.4053
UGUCCCGUAGGCUGUGAAGGCACAAUUGCUGGAGCA	chr12:53498790-53499030(+)$1	240	90	126	14.7765
UGguguaugacuggaugaauggguuucuauauaugg	chr1:53712555-53712816(-)$1	261	185	221	14.8017
AGUAUGGAGCGGUGAGCCCCCUCAGCAGCUCCUCCC	chr7:44796936-44797199(+)$1	263	213	249	14.5253
CCUCCUGAAUGAACUGGACACACAGGAUGAGGAGGU	chr21:45217687-45217901(+)$1	214	175	211	12.9924
CCUAGCUGGUGGCCAAGGAAUUGGGCCAGACAGGGA	chr2:74754846-74755066(-)$1	220	96	132	14.0854
GGCUGUGCUAGAGGGGAGGACCCCGGCUGCCCUGAC	chr7:65551630-65551835(+)$1	205	40	76	15.6079
UGGGUGGGGGCUGCAGGGAGUUGGAACGUCCCCAUU	chr19:7709441-7709702(+)$1	261	198	234	15.0454
CAGAUGUGAAGAGGGUGGCUGCCGAGUUCUUGUUUG	chr11:212511-212807(+)$1	296	194	230	15.5750
CUGCAAUAGUUGCUGGGACACCAAAGGCUUAGAGGA	chr17:78292982-78293213(+)$1	231	36	72	13.3020
UGUGAGGCAAGUGUUCCCUGAGUCCCUUGCCCUCCG	chr17:4455435-4455687(-)$1	252	61	97	11.8497
CCGCCGCUAUUCAGCUUCCGGGCUAAUUAGCAGUCG	chr15:34875643-34875919(-)$1	276	59	95	14.8662
ACUAGGGUGGUCGCUGGAAGCAGUCUCCUCCUUAGG	chr16:69402194-69402466(-)$1	272	223	259	13.1989
GGUUGGCCUGAGACAUUUGUGUGCCCAGGUGCUGGC	chr14:24650711-24650921(-)$1	210	70	106	14.0235
GUCUCCGCCCCUGACAAACAUGUUCGCGGCUCCCAG	chr19:7688589-7688829(-)$1	240	25	61	14.7519

#DB
((..(((((((..(((....)))....)))))))))	chr1:155234407-155234666(-)$1	1	9	45	15.2777
(.(((.(.(((.((((....)))).))).)..))))	chr12:132489520-132489758(+)$1	1	124	160	14.4128
.(...((((((.((((......)))).))))))...	chr22:18314621-18314960(-)$1	1	171	207	12.6834
(.(..((((...((((....))))))))))))))))	chr1:19484222-19484463(-)$1	1	51	87	15.8595
((....((((((((((....)).).))))))).)))	chr2:238990350-238990575(+)$1	1	88	124	11.8187
((((((((((..((((......))))...)))....	chr14:24113935-24114153(+)$1	1	83	119	11.7563
(...(((..((..(((.....)))..))..)))...	chr1:43220437-43220758(-)$1	1	249	285	11.8928
.(((..(((..(((((....))))).))))))...)	chr13:103286198-103286442(+)$1	1	73	109	13.6391
(((((((((...((((....))))..)))...))))	chr22:46709756-46710036(+)$1	1	216	252	16.6244
(((.(.(((((.((((.....))))))))).)))).	chrX:48934201-48934439(-)$1	1	184	220	11.8301
(.((..(((..(((((....)))))..)))..).).	chr4:1987421-1987706(-)$1	1	82	118	13.2087
((..(((..(....((......))....)..))).)	chr12:6657534-6657790(-)$1	1	72	108	12.3001
(.((((((....((((....))))....)))))).)	chr12:121176089-121176334(+)$1	1	177	213	15.0643
(((((((...((..((....))..)).)))))))))	chr17:38418745-38418998(+)$1	1	29	65	12.1076
(((.(((((...(((......)))...)))))..))	chr9:116997814-116998023(+)$1	1	35	71	13.4658
(((.(((((...((((...))))....)))))...)	chr17:12914905-12915189(-)$1	1	42	78	15.0933
((.(((((((...(((....)))..)))))))))))	chr11:65321305-65321583(-)$1	1	168	204	14.2398
(((....(((((.(((....))).))))))))))((	chr1:40627081-40627361(+)$1	1	59	95	11.8935
(.(((((....(((((....))))).))))).))))	chr20:62320861-62321101(+)$1	1	161	197	11.8794
((..(((.(((.((......)).))).))).)))))	chr14:31163958-31164176(+)$1	1	169	205	11.5104
((((((.(((((.(((....))).)).))).)))))	chr22:20100576-20100844(-)$1	1	66	102	11.6256
.(((((((((..((((....)))).))))))))).)	chr22:50694928-50695137(-)$1	1	5	41	15.9755
((((.((((....(((...)))....))))))))))	chr1:21076241-21076476(-)$1	1	6	42	12.7349
(((((..((((.((((....))))))))...)))))	chr3:51673353-51673666(+)$1	1	267	303	13.0509
.(((((.((...((((....)))))).)))))....	chr8:53580478-53580774(-)$1	1	137	173	12.5912
(.(((((((.((.(((....))).)))))))))..)	chr16:70569173-70569424(+)$1	1	43	79	13.1560
(((..(((((.((((.....)))).)))))..))))	chr19:46518206-46518496(+)$1	1	105	141	11.4863
(((((((..(..((((.....)))).)..)))..))	chr2:74718528-74718757(+)$1	1	118	154	12.1250
(((((.(((...(((.....)))...)))..)))))	chr3:48670990-48671230(-)$1	1	57	93	13.0205
(((..((.(((.((((...))))))).)).))))))	chr4:3446465-3446700(+)$1	1	30	66	12.6092
((((((((((((((((...)))))))))))))))))	chr6:110991535-110991797(-)$1	1	195	231	13.3938
(.(((((((..(((((.....)))))))))))).))	chr8:22885742-22885985(-)$1	1	159	195	11.4814
..(((((((((.((((......)))).)))))))))	chr11:118369936-118370237(+)$1	1	98	134	12.6189
(.(((.(((.(..(((...))).).))).))).)).	chr16:88800215-88800479(-)$1	1	4	40	11.7374
((((.((((...(((.....)))...)))).)))).	chr2:86364117-86364347(+)$1	1	152	188	11.2110
..(((((((...((((....))))....))))))))	chr4:2900123-2900360(+)$1	1	42	78	16.7132
((...(((.(((((((....))))))))))))))))	chr1:11888133-11888365(+)$1	1	84	120	12.6161
((((..((....((((....).)))))..)))))))	chr4:152097946-152098199(-)$1	1	193	229	13.6163
.((..((((...(((....)))...))))))..)))	chr7:102004313-102004591(+)$1	1	173	209	12.4207
(..(((((((...(((....)))...)))))))..)	chr12:49719286-49719541(+)$1	1	187	223	16.2110
(((((.(...(.((((....)))).)).))).))))	chr17:7154411-7154642(-)$1	1	166	202	14.4053
..(((.((((..((((....)))).)))).)))..)	chr12:53498790-53499030(+)$1	1	90	126	14.7765
(.(((((((...((((......)))).)))))))..	chr1:53712555-53712816(-)$1	1	185	221	14.8017
(((..((((((.((((....)))).).)))))....	chr7:44796936-44797199(+)$1	1	213	249	14.5253
((((((.(.....(((......)))..).)))))))	chr21:45217687-45217901(+)$1	1	175	211	12.9924
(((..(((((..((((....)))))))))..)))))	chr2:74754846-74755066(-)$1	1	96	132	14.0854
(((...(((...((((....))))))).)))))..)	chr7:65551630-65551835(+)$1	1	40	76	15.6079
((((((((((((.(((....))).)..)))))))))	chr19:7709441-7709702(+)$1	1	198	234	15.0454
..(((..(((...(((....)))...)))..)))))	chr11:212511-212807(+)$1	1	194	230	15.5750
(((....((((..(((....)))..)))))))))).	chr17:78292982-78293213(+)$1	1	36	72	13.3020
((((.((((((.((((...))).).))))))...))	chr17:4455435-4455687(-)$1	1	61	97	11.8497
((((.((((...((((....))))...)))).).))	chr15:34875643-34875919(-)$1	1	59	95	14.8662
.((((((.((..((((....))))..)).)))))))	chr16:69402194-69402466(-)$1	1	223	259	13.1989
(((..(((((.(.(((....)))).))))))))..)	chr14:24650711-24650921(-)$1	1	70	106	14.0235
(...((((....((((....)))).))))..)))))	chr19:7688589-7688829(-)$1	1	25	61	14.7519

#PSSM
e : 0.14	d : 0.14	c : 0.14	g : 0.12	[ : 0.09	f : 0.09	= : 0.07	a : 0.03	! : 0.03	h : 0.01	( : 0.01	i : 0.01	) : 0.01	b : 0.01	# : 0.01	
[ : 0.16	e : 0.12	f : 0.10	g : 0.10	c : 0.10	= : 0.07	d : 0.07	b : 0.05	! : 0.05	" : 0.03	i : 0.03	a : 0.01	) : 0.01	# : 0.01	
c : 0.20	g : 0.16	f : 0.10	e : 0.10	! : 0.07	" : 0.07	= : 0.05	i : 0.05	b : 0.05	a : 0.03	d : 0.03	# : 0.01	[ : 0.01	
g : 0.20	! : 0.18	c : 0.10	f : 0.10	" : 0.09	# : 0.05	[ : 0.05	= : 0.05	e : 0.05	a : 0.03	i : 0.03	d : 0.01	
g : 0.18	! : 0.18	c : 0.16	e : 0.09	f : 0.07	[ : 0.07	" : 0.05	# : 0.05	= : 0.05	i : 0.03	a : 0.01	d : 0.01	
g : 0.18	e : 0.16	[ : 0.10	d : 0.10	c : 0.09	! : 0.09	f : 0.07	# : 0.05	= : 0.05	i : 0.03	b : 0.01	" : 0.01	
c : 0.20	g : 0.16	e : 0.14	d : 0.12	f : 0.07	= : 0.05	[ : 0.05	a : 0.03	# : 0.03	i : 0.03	! : 0.03	b : 0.03	
c : 0.18	d : 0.16	g : 0.14	e : 0.14	[ : 0.07	f : 0.05	! : 0.05	" : 0.03	i : 0.03	b : 0.03	= : 0.03	# : 0.01	a : 0.01	
c : 0.21	g : 0.14	d : 0.14	e : 0.14	# : 0.07	! : 0.05	f : 0.03	" : 0.03	i : 0.03	b : 0.03	= : 0.03	[ : 0.01	$ : 0.01	
" : 0.25	c : 0.10	e : 0.10	g : 0.09	# : 0.09	! : 0.05	d : 0.05	f : 0.03	b : 0.03	a : 0.03	i : 0.03	[ : 0.03	= : 0.03	$ : 0.01	
" : 0.27	! : 0.16	# : 0.10	b : 0.07	g : 0.05	c : 0.05	a : 0.05	f : 0.03	e : 0.03	d : 0.03	[ : 0.03	= : 0.03	i : 0.01	$ : 0.01	
" : 0.27	! : 0.18	[ : 0.18	e : 0.09	# : 0.09	b : 0.05	g : 0.03	a : 0.03	d : 0.01	= : 0.01	$ : 0.01	
d : 0.45	! : 0.09	c : 0.09	[ : 0.09	e : 0.07	" : 0.05	g : 0.03	# : 0.03	b : 0.01	= : 0.01	$ : 0.01	a : 0.01	
d : 0.45	c : 0.36	e : 0.07	a : 0.01	# : 0.01	! : 0.01	b : 0.01	= : 0.01	g : 0.01	
d : 0.45	c : 0.36	e : 0.07	b : 0.05	o : 0.01	= : 0.01	g : 0.01	
d : 0.43	c : 0.27	e : 0.07	b : 0.05	n : 0.05	o : 0.03	= : 0.01	g : 0.01	a : 0.01	m : 0.01	
m : 0.61	o : 0.14	n : 0.12	l : 0.10	
m : 0.61	o : 0.14	n : 0.12	l : 0.10	
m : 0.61	o : 0.14	n : 0.12	l : 0.10	
m : 0.60	o : 0.14	n : 0.12	c : 0.07	d : 0.03	= : 0.01	
d : 0.34	c : 0.29	o : 0.12	n : 0.07	b : 0.05	e : 0.05	= : 0.01	g : 0.01	a : 0.01	
d : 0.38	c : 0.32	o : 0.10	e : 0.07	b : 0.05	= : 0.01	g : 0.01	] : 0.01	
d : 0.45	c : 0.29	] : 0.07	e : 0.07	b : 0.01	2 : 0.01	4 : 0.01	= : 0.01	g : 0.01	3 : 0.01	
d : 0.41	c : 0.10	3 : 0.09	a : 0.07	e : 0.07	] : 0.07	4 : 0.05	2 : 0.05	b : 0.01	= : 0.01	g : 0.01	
] : 0.20	d : 0.14	3 : 0.12	4 : 0.10	e : 0.10	2 : 0.09	c : 0.09	b : 0.07	= : 0.01	g : 0.01	a : 0.01	
d : 0.18	4 : 0.10	2 : 0.10	e : 0.10	3 : 0.10	c : 0.09	b : 0.09	g : 0.05	] : 0.05	a : 0.03	i : 0.01	= : 0.01	f : 0.01	
] : 0.16	d : 0.14	c : 0.12	g : 0.10	e : 0.10	4 : 0.09	3 : 0.05	b : 0.05	2 : 0.05	a : 0.03	i : 0.01	= : 0.01	f : 0.01	
c : 0.18	e : 0.18	d : 0.16	g : 0.12	b : 0.05	4 : 0.05	= : 0.05	f : 0.03	i : 0.03	2 : 0.03	] : 0.03	3 : 0.01	a : 0.01	
e : 0.20	c : 0.16	g : 0.14	d : 0.12	] : 0.07	f : 0.05	2 : 0.05	= : 0.05	a : 0.03	3 : 0.03	i : 0.03	b : 0.01	
g : 0.20	c : 0.18	e : 0.18	2 : 0.10	f : 0.07	= : 0.05	d : 0.05	3 : 0.03	i : 0.03	] : 0.03	a : 0.01	b : 0.01	
g : 0.21	c : 0.16	2 : 0.14	e : 0.12	f : 0.09	] : 0.07	= : 0.05	i : 0.05	3 : 0.03	b : 0.01	d : 0.01	
g : 0.21	c : 0.18	e : 0.16	f : 0.10	2 : 0.07	= : 0.07	] : 0.05	i : 0.05	3 : 0.03	a : 0.01	d : 0.01	
g : 0.20	c : 0.16	f : 0.10	e : 0.10	= : 0.07	3 : 0.05	2 : 0.05	d : 0.05	i : 0.05	] : 0.03	a : 0.03	7 : 0.01	> : 0.01	4 : 0.01	
g : 0.14	2 : 0.12	c : 0.10	f : 0.10	3 : 0.09	= : 0.09	e : 0.09	] : 0.05	d : 0.05	i : 0.05	7 : 0.01	> : 0.01	b : 0.01	4 : 0.01	
e : 0.12	g : 0.12	f : 0.10	2 : 0.10	c : 0.09	= : 0.09	3 : 0.07	d : 0.07	] : 0.05	i : 0.03	b : 0.03	7 : 0.01	a : 0.01	> : 0.01	4 : 0.01	
d : 0.16	e : 0.14	g : 0.12	f : 0.09	= : 0.09	a : 0.07	3 : 0.05	] : 0.03	c : 0.03	b : 0.03	i : 0.03	7 : 0.01	> : 0.01	: : 0.01	9 : 0.01	2 : 0.01	4 : 0.01	

#score	740.7622192657208
#seq	55
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284NOU_LARP4_CDS_m2_run2.txt

#BEAR
hxxxxxxxxxxxxxxxhhhh	chr8:100904038-100904283(-)$1	245	220	240	12.8146
eeeeuuuuuuuuuuuueeee	chr19:42375316-42375547(+)$1	231	38	58	19.8984
dddduuuuuuuuuuuudddd	chr16:56643140-56643397(+)$1	257	56	76	18.6534
eeeeesssssssssseeeee	chr11:62298795-62299025(-)$1	230	135	155	15.1933
eeeeesssssssssseeeee	chr5:85916384-85916670(+)$1	286	154	174	15.1933
eeeeuuuuuuuuuuuueeee	chr2:98264436-98264681(+)$1	245	4	24	19.8984
ffffffssssssssssffff	chr4:39460416-39460631(-)$1	215	100	120	13.5338
ffffuuuuuuuuuuuuffff	chr2:85824518-85824775(+)$1	257	153	173	18.7214
fffffyyyyyyyyyyyyyyy	chr2:98263714-98263961(+)$1	247	68	88	17.8049
gggggvvvvvvvvvvvvvgg	chr16:88876057-88876305(-)$1	248	32	52	16.8332
cccxxxxxxxxxxxxxxxcc	chr11:5290961-5291214(-)$1	253	0	20	15.1138
ffffuuuuuuuuuuuuffff	chr11:5290770-5291006(-)$1	236	126	146	18.7214
[ddddssssssssssdddd]	chr2:217363467-217363701(+)$1	234	90	110	13.7475
cdddd^^^^^^^^^^^^^^^	chr2:47387818-47388044(-)$1	226	26	46	13.1943
fffffyyyyyyyyyyyyyyy	chr11:62284215-62284446(-)$1	231	141	161	17.8049
eeeeesssssssssseeeee	chr11:62294489-62294762(-)$1	273	179	199	15.1933
:ddddssssssssssdddd:	chr11:62296868-62297121(-)$1	253	12	32	11.7939
eeeeevvvvvvvvvvvvvee	chr16:227306-227531(+)$1	225	88	108	18.0129
eeeeexxxxxxxxxxxxxxx	chr11:62286000-62286255(-)$1	255	190	210	15.9594
eeeeettttttttttteeee	chr1:150192912-150193165(-)$1	253	39	59	19.1406
ee[bbuuuuuuuuuuuubb2	chr2:176042949-176043202(-)$1	253	157	177	17.9997
!!ccctttttttttttccc2	chr11:67353925-67354207(+)$1	282	170	190	17.6867
ccc^^^^^^^^^^^^^^^^^	chr15:44085875-44086131(+)$1	256	230	250	13.3257
[ddddtttttttttttdddd	chr14:50052567-50052780(-)$1	213	173	193	17.7664
eeeee^^^^^^^^^^^^^^^	chr11:62295148-62295394(-)$1	246	31	51	14.0934
dddduuuuuuuuuuuudddd	chr16:56717812-56718084(+)$1	272	79	99	18.6534
ffffffssssssssssffff	chr16:88709610-88709920(-)$1	310	287	307	13.5338
ddddvvvvvvvvvvvvvddd	chr11:67353849-67354109(+)$1	260	170	190	17.1617
eeeeesssssssssseeeee	chr11:5275492-5275739(-)$1	247	32	52	15.1933
eeeee^^^^^^^^^^^^^^^	chr19:1599394-1599637(-)$1	243	186	206	14.0934
ddddvvvvvvvvvvvvvddd	chr11:62299844-62300079(-)$1	235	123	143	17.1617
eeeeesssssssssseeeee	chr5:159855550-159855833(+)$1	283	80	100	15.1933
gggguuuuuuuuuuuugggg	chr16:204289-204594(+)$1	305	74	94	18.6322
ffffffssssssssssffff	chr12:53693007-53693327(+)$1	320	212	232	13.5338
ffffuuuuuuuuuuuuffff	chr11:5290691-5290970(-)$1	279	90	110	18.7214
ffffattttttttttta]ff	chr1:46775795-46776023(+)$1	228	123	143	18.1724
eeeeuuuuuuuuuuuueeee	chr1:165624532-165624788(+)$1	256	54	74	19.8984
eeeeeyyyyyyyyyyyyyyy	chr16:204215-204475(+)$1	260	51	71	18.5867
eeeeuuuuuuuuuuuueeee	chr8:11696008-11696249(+)$1	241	55	75	19.8984
eeeeesssssssssseeeee	chr2:176042879-176043131(-)$1	252	27	47	15.1933
eewwwwwwwwwwwwwweeee	chr11:5289673-5289907(-)$1	234	58	78	17.7587
dddduuuuuuuuuuuudddd	chr11:8704241-8704464(+)$1	223	194	214	18.6534
a!!bbuuuuuuuuuuuubb3	chr12:56510460-56510686(+)$1	226	164	184	17.6770
ffffffssssssssssffff	chr4:39460409-39460616(-)$1	207	85	105	13.5338
gggggtttttttttttgggg	chr19:46190663-46190958(-)$1	295	213	233	17.6504
eeeee^^^^^^^^^^^^^^^	chr11:62294343-62294588(-)$1	245	168	188	14.0934
eeeeesssssssssseeeee	chr21:33040723-33040989(+)$1	266	228	248	15.1933
ffffftttttttttttffff	chr6:31694791-31695084(-)$1	293	80	100	17.8298
cc!!attttttttttta22c	chr20:2442301-2442542(-)$1	241	190	210	17.6077
d[cccyyyyyyyyyyyyyyy	chr1:8923192-8923434(-)$1	242	151	171	17.6570
eeeee^^^^^^^^^^^^^^^	chr11:62340097-62340315(-)$1	218	56	76	14.0934
[cccwwwwwwwwwwwwwwcc	chr11:67352123-67352344(+)$1	221	64	84	17.9949
dddd^^^^^^^^^^^^^^^^	chr11:5269494-5269750(-)$1	256	210	230	13.5583

#otherMatches

#Seq PSSM
CUCCCCCUUGUAAUGUGUUU	chr8:100904038-100904283(-)$1	245	220	240	12.8146
UGUUACAAAGUGCCCCAGCA	chr19:42375316-42375547(+)$1	231	38	58	19.8984
GGGCUGUGCCAAGUGUGCCC	chr16:56643140-56643397(+)$1	257	56	76	18.6534
AGAUUAAAAUGCCCAAAUUU	chr11:62298795-62299025(-)$1	230	135	155	15.1933
CAUAUGCCAUACUAGAUAUG	chr5:85916384-85916670(+)$1	286	154	174	15.1933
ACCUUUUUUCCCUUUUAGGU	chr2:98264436-98264681(+)$1	245	4	24	19.8984
CUUUGCUGCGUCUACUGCGA	chr4:39460416-39460631(-)$1	215	100	120	13.5338
CCUUGAAUCCUCAUUAAAGG	chr2:85824518-85824775(+)$1	257	153	173	18.7214
uuuuguuuuUUGUUUUUUCU	chr2:98263714-98263961(+)$1	247	68	88	17.8049
GGGGACCUCACCCUCCCAUC	chr16:88876057-88876305(-)$1	248	32	52	16.8332
GGCAGUAAAGAAUAAAAGGC	chr11:5290961-5291214(-)$1	253	0	20	15.1138
AGAGAUUUUUUGACAGCUUU	chr11:5290770-5291006(-)$1	236	126	146	18.7214
CGUCUCUUCCUUUCUGGGCU	chr2:217363467-217363701(+)$1	234	90	110	13.7475
UGUGAuuuuuuuuuuuuuuu	chr2:47387818-47388044(-)$1	226	26	46	13.1943
CUGUCCUCCUCUUCUAGCAA	chr11:62284215-62284446(-)$1	231	141	161	17.8049
UUGAAAGGCCCUAAGUUCAA	chr11:62294489-62294762(-)$1	273	179	199	15.1933
AAAACUGAUGUAGAUGUUUC	chr11:62296868-62297121(-)$1	253	12	32	11.7939
CUCCAAAUACCGUUAAGCUG	chr16:227306-227531(+)$1	225	88	108	18.0129
GGCCCGAUGUUUCUCUAAAG	chr11:62286000-62286255(-)$1	255	190	210	15.9594
AAAUGUAACCAAUCCUCAUU	chr1:150192912-150193165(-)$1	253	39	59	19.1406
GUUGCUUUCUUGAUUUUGUU	chr2:176042949-176043202(-)$1	253	157	177	17.9997
CAGGACCAAUAAAAUUUCUA	chr11:67353925-67354207(+)$1	282	170	190	17.6867
GGGUCCCUUUUGUGCUUCCU	chr15:44085875-44086131(+)$1	256	230	250	13.3257
UUCCGCGAAAGACAAACGGA	chr14:50052567-50052780(-)$1	213	173	193	17.7664
GAGAUGCACUUCAAGACCCC	chr11:62295148-62295394(-)$1	246	31	51	14.0934
GGGCUGUGCCAAGUGUGCCC	chr16:56717812-56718084(+)$1	272	79	99	18.6534
GGCAGGCACCCCGUUUCCUG	chr16:88709610-88709920(-)$1	310	287	307	13.5338
UCCCCAUCAAUGGCAACGGG	chr11:67353849-67354109(+)$1	260	170	190	17.1617
GACAGCUUUGGCAACCUGUC	chr11:5275492-5275739(-)$1	247	32	52	15.1933
GAAGGAUAAUUAAUUACACA	chr19:1599394-1599637(-)$1	243	186	206	14.0934
GGUCCAGAUGUUCAUAUGAC	chr11:62299844-62300079(-)$1	235	123	143	17.1617
CAUUCUGUCGACCCUGGAUG	chr5:159855550-159855833(+)$1	283	80	100	15.1933
GUCGUAUCCUCUGUCCUGAC	chr16:204289-204594(+)$1	305	74	94	18.6322
GCCAGCUGGGCAGAAUGUUG	chr12:53693007-53693327(+)$1	320	212	232	13.5338
AGAGAUUUUUUGACAGCUUU	chr11:5290691-5290970(-)$1	279	90	110	18.7214
CUCUCGAUCACAUACAGAAG	chr1:46775795-46776023(+)$1	228	123	143	18.1724
UUCUUUCUUCUUUUUCAGAA	chr1:165624532-165624788(+)$1	256	54	74	19.8984
CCAGCUCCUGUCCCACUGCC	chr16:204215-204475(+)$1	260	51	71	18.5867
CCUGACCACUCUCUCCCAGG	chr8:11696008-11696249(+)$1	241	55	75	19.8984
UCUCAUAUGCUAUCCUGGGA	chr2:176042879-176043131(-)$1	252	27	47	15.1933
UAUUUUGUCUUUUGCCUAAC	chr11:5289673-5289907(-)$1	234	58	78	17.7587
UCAUCCACUCCCUACCAUGG	chr11:8704241-8704464(+)$1	223	194	214	18.6534
CGAGUAGUAGCGAGGAGACG	chr12:56510460-56510686(+)$1	226	164	184	17.6770
CUUUGCUGCGUCUACUGCGA	chr4:39460409-39460616(-)$1	207	85	105	13.5338
GAAUAAUAAAGCUCUGUGUU	chr19:46190663-46190958(-)$1	295	213	233	17.6504
GGGGCCCCAAAGUUGAUGUA	chr11:62294343-62294588(-)$1	245	168	188	14.0934
AAUGUAUCCUGAUAAACAUU	chr21:33040723-33040989(+)$1	266	228	248	15.1933
CUUGGGGUACUGCUGGCCAG	chr6:31694791-31695084(-)$1	293	80	100	17.8298
CAUAGUCCUUUUAUCUCCUU	chr20:2442301-2442542(-)$1	241	190	210	17.6077
GCGUCUCCUCCUUUCUUCUC	chr1:8923192-8923434(-)$1	242	151	171	17.6570
GGGACCCUUCUACUCAUUAA	chr11:62340097-62340315(-)$1	218	56	76	14.0934
AGACCUCACCCUGUACCAGU	chr11:67352123-67352344(+)$1	221	64	84	17.9949
AGCAAUACAAAUAAUAAAUC	chr11:5269494-5269750(-)$1	256	210	230	13.5583

#DB
(...............))))	chr8:100904038-100904283(-)$1	1	220	240	12.8146
((((............))))	chr19:42375316-42375547(+)$1	1	38	58	19.8984
((((............))))	chr16:56643140-56643397(+)$1	1	56	76	18.6534
(((((..........)))))	chr11:62298795-62299025(-)$1	1	135	155	15.1933
(((((..........)))))	chr5:85916384-85916670(+)$1	1	154	174	15.1933
((((............))))	chr2:98264436-98264681(+)$1	1	4	24	19.8984
((((((..........))))	chr4:39460416-39460631(-)$1	1	100	120	13.5338
((((............))))	chr2:85824518-85824775(+)$1	1	153	173	18.7214
(((((...............	chr2:98263714-98263961(+)$1	1	68	88	17.8049
(((((.............))	chr16:88876057-88876305(-)$1	1	32	52	16.8332
(((...............))	chr11:5290961-5291214(-)$1	1	0	20	15.1138
((((............))))	chr11:5290770-5291006(-)$1	1	126	146	18.7214
.((((..........)))).	chr2:217363467-217363701(+)$1	1	90	110	13.7475
(((((...............	chr2:47387818-47388044(-)$1	1	26	46	13.1943
(((((...............	chr11:62284215-62284446(-)$1	1	141	161	17.8049
(((((..........)))))	chr11:62294489-62294762(-)$1	1	179	199	15.1933
.((((..........)))).	chr11:62296868-62297121(-)$1	1	12	32	11.7939
(((((.............))	chr16:227306-227531(+)$1	1	88	108	18.0129
(((((...............	chr11:62286000-62286255(-)$1	1	190	210	15.9594
(((((...........))))	chr1:150192912-150193165(-)$1	1	39	59	19.1406
((.((............)).	chr2:176042949-176043202(-)$1	1	157	177	17.9997
..(((...........))).	chr11:67353925-67354207(+)$1	1	170	190	17.6867
(((.................	chr15:44085875-44086131(+)$1	1	230	250	13.3257
.((((...........))))	chr14:50052567-50052780(-)$1	1	173	193	17.7664
(((((...............	chr11:62295148-62295394(-)$1	1	31	51	14.0934
((((............))))	chr16:56717812-56718084(+)$1	1	79	99	18.6534
((((((..........))))	chr16:88709610-88709920(-)$1	1	287	307	13.5338
((((.............)))	chr11:67353849-67354109(+)$1	1	170	190	17.1617
(((((..........)))))	chr11:5275492-5275739(-)$1	1	32	52	15.1933
(((((...............	chr19:1599394-1599637(-)$1	1	186	206	14.0934
((((.............)))	chr11:62299844-62300079(-)$1	1	123	143	17.1617
(((((..........)))))	chr5:159855550-159855833(+)$1	1	80	100	15.1933
((((............))))	chr16:204289-204594(+)$1	1	74	94	18.6322
((((((..........))))	chr12:53693007-53693327(+)$1	1	212	232	13.5338
((((............))))	chr11:5290691-5290970(-)$1	1	90	110	18.7214
(((((...........).))	chr1:46775795-46776023(+)$1	1	123	143	18.1724
((((............))))	chr1:165624532-165624788(+)$1	1	54	74	19.8984
(((((...............	chr16:204215-204475(+)$1	1	51	71	18.5867
((((............))))	chr8:11696008-11696249(+)$1	1	55	75	19.8984
(((((..........)))))	chr2:176042879-176043131(-)$1	1	27	47	15.1933
((..............))))	chr11:5289673-5289907(-)$1	1	58	78	17.7587
((((............))))	chr11:8704241-8704464(+)$1	1	194	214	18.6534
(..((............)).	chr12:56510460-56510686(+)$1	1	164	184	17.6770
((((((..........))))	chr4:39460409-39460616(-)$1	1	85	105	13.5338
(((((...........))))	chr19:46190663-46190958(-)$1	1	213	233	17.6504
(((((...............	chr11:62294343-62294588(-)$1	1	168	188	14.0934
(((((..........)))))	chr21:33040723-33040989(+)$1	1	228	248	15.1933
(((((...........))))	chr6:31694791-31695084(-)$1	1	80	100	17.8298
((..(...........)..)	chr20:2442301-2442542(-)$1	1	190	210	17.6077
(.(((...............	chr1:8923192-8923434(-)$1	1	151	171	17.6570
(((((...............	chr11:62340097-62340315(-)$1	1	56	76	14.0934
.(((..............))	chr11:67352123-67352344(+)$1	1	64	84	17.9949
((((................	chr11:5269494-5269750(-)$1	1	210	230	13.5583

#PSSM
e : 0.39	f : 0.20	d : 0.13	c : 0.07	g : 0.05	[ : 0.05	h : 0.01	: : 0.01	! : 0.01	a : 0.01	
e : 0.39	f : 0.20	d : 0.18	c : 0.07	g : 0.05	! : 0.03	x : 0.01	[ : 0.01	
e : 0.35	f : 0.20	d : 0.18	c : 0.09	g : 0.05	! : 0.03	x : 0.01	[ : 0.01	w : 0.01	
e : 0.35	f : 0.20	d : 0.18	g : 0.05	c : 0.05	x : 0.03	b : 0.03	^ : 0.01	w : 0.01	! : 0.01	
e : 0.28	u : 0.20	f : 0.13	d : 0.07	x : 0.03	g : 0.03	b : 0.03	c : 0.03	^ : 0.03	v : 0.03	a : 0.03	w : 0.03	
u : 0.24	s : 0.16	^ : 0.13	t : 0.13	f : 0.07	y : 0.07	v : 0.07	x : 0.05	w : 0.03	
u : 0.24	s : 0.24	^ : 0.13	t : 0.13	y : 0.07	v : 0.07	x : 0.05	w : 0.03	
u : 0.24	s : 0.24	^ : 0.13	t : 0.13	y : 0.07	v : 0.07	x : 0.05	w : 0.03	
u : 0.24	s : 0.24	^ : 0.13	t : 0.13	y : 0.07	v : 0.07	x : 0.05	w : 0.03	
u : 0.24	s : 0.24	^ : 0.13	t : 0.13	y : 0.07	v : 0.07	x : 0.05	w : 0.03	
u : 0.24	s : 0.24	^ : 0.13	t : 0.13	y : 0.07	v : 0.07	x : 0.05	w : 0.03	
u : 0.24	s : 0.24	^ : 0.13	t : 0.13	y : 0.07	v : 0.07	x : 0.05	w : 0.03	
u : 0.24	s : 0.24	^ : 0.13	t : 0.13	y : 0.07	v : 0.07	x : 0.05	w : 0.03	
u : 0.24	s : 0.24	^ : 0.13	t : 0.13	y : 0.07	v : 0.07	x : 0.05	w : 0.03	
u : 0.24	s : 0.24	^ : 0.13	t : 0.13	y : 0.07	v : 0.07	x : 0.05	w : 0.03	
u : 0.24	e : 0.13	^ : 0.13	t : 0.13	s : 0.07	y : 0.07	v : 0.07	x : 0.05	d : 0.03	w : 0.03	
e : 0.24	f : 0.15	^ : 0.13	d : 0.11	y : 0.07	v : 0.07	x : 0.03	u : 0.03	g : 0.03	a : 0.03	h : 0.01	c : 0.01	w : 0.01	
e : 0.24	d : 0.15	f : 0.15	^ : 0.13	y : 0.07	v : 0.03	x : 0.03	b : 0.03	g : 0.03	h : 0.01	c : 0.01	] : 0.01	2 : 0.01	w : 0.01	
e : 0.26	f : 0.16	d : 0.15	^ : 0.13	y : 0.07	g : 0.05	c : 0.05	b : 0.03	h : 0.01	x : 0.01	2 : 0.01	
e : 0.26	f : 0.16	^ : 0.13	d : 0.11	y : 0.07	g : 0.05	c : 0.05	2 : 0.03	h : 0.01	] : 0.01	: : 0.01	x : 0.01	3 : 0.01	

#score	875.0295226893832
#seq	53
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_UTR_m3_run2.txt

#BEAR
ddddoooooodddd	chr7:917480-917730(+)$1	250	155	169	12.3898
[cccooooooccc]	chr19:43012762-43013056(-)$1	294	103	117	10.6472
eeeeooooooeeee	chr2:69472424-69472716(+)$1	292	250	264	10.6391
[cccooooooccc]	chr19:3053150-3053399(-)$1	249	23	37	10.6472
eeeeooooooeeee	chr7:127667243-127667504(+)$1	261	27	41	10.6391
iiiiooooooiiii	chr19:42758646-42758941(-)$1	295	83	97	9.6788
ddddoooooodddd	chr17:36891487-36891832(-)$1	345	25	39	12.3898
#cccooooooccc5	chr3:11888080-11888362(-)$1	282	236	250	9.6698
ddddoooooodddd	chr2:110371398-110371678(-)$1	280	192	206	12.3898
ddddoooooodddd	chr7:150929535-150929797(+)$1	262	105	119	12.3898
eeeeooooooeeee	chr9:6925316-6925621(+)$1	305	152	166	10.6391
dd[aooooooa]dd	chr19:4045138-4045389(-)$1	251	178	192	11.0488
ddddoooooodddd	chr16:28914932-28915246(+)$1	314	151	165	12.3898
ddddoooooodddd	chr19:4045311-4045593(-)$1	282	54	68	12.3898
dcccooooooccc]	chr19:49606465-49606775(+)$1	310	4	18	10.8936
[cccooooooccc4	chr19:39435857-39436275(-)$1	418	39	53	10.6375
acccooooooccc]	chr17:75447274-75447592(+)$1	318	180	194	10.5390
ddddoooooodddd	chr2:159314184-159314486(+)$1	302	238	252	12.3898
ddddoooooodddd	chr16:69599836-69600149(+)$1	313	193	207	12.3898
dd[aooooooaddd	chr14:24616169-24616409(-)$1	240	20	34	11.4473
[cccoooooocccd	chr15:72491298-72491553(-)$1	255	157	171	10.9087
eeeeooooooeeee	chr5:175307105-175307348(+)$1	243	73	87	10.6391
"cccooooooccc3	chr3:52007711-52008099(-)$1	388	186	200	10.4809
ddddoooooodddd	chr7:44807167-44807465(+)$1	298	121	135	12.3898
eeeeooooooeeee	chr2:27264189-27264462(+)$1	273	177	191	10.6391
eeeeooooooeeee	chr14:24653312-24653604(-)$1	292	62	76	10.6391
eeeeooooooeeee	chr20:30155926-30156206(+)$1	280	168	182	10.6391
ddddoooooodddd	chr11:62649142-62649397(+)$1	255	236	250	12.3898
[cccooooooccc]	chr19:3053199-3053502(-)$1	303	78	92	10.6472
ddddoooooodddd	chr12:49332430-49332708(-)$1	278	193	207	12.3898
ddddoooooodddd	chr19:54969994-54970240(+)$1	246	142	156	12.3898
eeeeooooooeeee	chr17:36698316-36698569(-)$1	253	180	194	10.6391
ddddoooooodddd	chr19:55901072-55901345(+)$1	273	167	181	12.3898
ddddoooooodddd	chr17:16346742-16347103(+)$1	361	250	264	12.3898
#cccooooooccc>	chr11:45826869-45827177(+)$1	308	212	226	10.2281
ddddoooooodddd	chr17:80708545-80708817(+)$1	272	48	62	12.3898
ddddoooooodddd	chr19:45452128-45452381(+)$1	253	43	57	12.3898
eeeeooooooeeee	chr14:24616100-24616352(-)$1	252	76	90	10.6391
ddddoooooodddd	chr17:42474987-42475216(-)$1	229	52	66	12.3898
ddddoooooodddd	chr19:35533050-35533382(+)$1	332	101	115	12.3898
ddddoooooodddd	chr19:54971589-54971829(+)$1	240	5	19	12.3898
eeeeooooooeeee	chr12:58005267-58005577(+)$1	310	170	184	10.6391
dd[aooooooa]dd	chr9:130704874-130705106(-)$1	232	7	21	11.0488
ddddoooooodddd	chr17:41846694-41846987(-)$1	293	135	149	12.3898
[cccooooooccc]	chr12:50494002-50494352(+)$1	350	268	282	10.6472
[cccooooooccc]	chr17:7082635-7082904(-)$1	269	208	222	10.6472
ddddoooooodddd	chr12:6715737-6716024(-)$1	287	86	100	12.3898
ddddoooooodddd	chr14:21905055-21905358(-)$1	303	4	18	12.3898
eeeeooooooeeee	chr9:139849663-139849947(+)$1	284	49	63	10.6391
ddddoooooodddd	chr16:58699427-58699750(-)$1	323	130	144	12.3898
ddddoooooodddd	chr6:43472836-43473085(+)$1	249	220	234	12.3898
ddddoooooodddd	chr7:1028326-1028639(+)$1	313	296	310	12.3898
ccccooooooccc]	chr14:24028816-24029031(-)$1	215	8	22	10.5761
ddddoooooodddd	chr16:28885175-28885449(+)$1	274	241	255	12.3898
ddddoooooodddd	chr8:27402712-27403028(+)$1	316	272	286	12.3898
ddddoooooodddd	chr6:167356883-167357212(-)$1	329	181	195	12.3898
dddaooooooa]dd	chr20:62695304-62695554(+)$1	250	19	33	11.4022
#cccooooooccc=	chr20:30252884-30253139(-)$1	255	94	108	10.4852
ddddoooooodddd	chrX:148561661-148561920(-)$1	259	191	205	12.3898
ddddoooooodddd	chr17:46005416-46005749(+)$1	333	153	167	12.3898

#otherMatches

#Seq PSSM
GCCCUACACCGGGC	chr7:917480-917730(+)$1	250	155	169	12.3898
AAACUUGCCUGUUC	chr19:43012762-43013056(-)$1	294	103	117	10.6472
CUUUCCAGUUAGAG	chr2:69472424-69472716(+)$1	292	250	264	10.6391
AGUCUCCCCCGACC	chr19:3053150-3053399(-)$1	249	23	37	10.6472
AACUGAAAGAAGUU	chr7:127667243-127667504(+)$1	261	27	41	10.6391
CCCGGGAUCACGGG	chr19:42758646-42758941(-)$1	295	83	97	9.6788
GGCUCACCCUAGCC	chr17:36891487-36891832(-)$1	345	25	39	12.3898
UGUUAGCCUCGACC	chr3:11888080-11888362(-)$1	282	236	250	9.6698
CGGCCUUCCCGCCG	chr2:110371398-110371678(-)$1	280	192	206	12.3898
GGGGUCUGUUCCCC	chr7:150929535-150929797(+)$1	262	105	119	12.3898
CUUUUCAAAUAAGG	chr9:6925316-6925621(+)$1	305	152	166	10.6391
UGUCGUCCUAGCCA	chr19:4045138-4045389(-)$1	251	178	192	11.0488
CAGCCCAGCUGCUG	chr16:28914932-28915246(+)$1	314	151	165	12.3898
CAAUUUUCAUAUUG	chr19:4045311-4045593(-)$1	282	54	68	12.3898
UUGUAAAUUCACAC	chr19:49606465-49606775(+)$1	310	4	18	10.8936
CUCCACCCCAGGAC	chr19:39435857-39436275(-)$1	418	39	53	10.6375
GAGGUCCCUCCCUA	chr17:75447274-75447592(+)$1	318	180	194	10.5390
CUCCCUGCCAGGAG	chr2:159314184-159314486(+)$1	302	238	252	12.3898
AUCGUUUCCUCGGU	chr16:69599836-69600149(+)$1	313	193	207	12.3898
CCACCCUGCAGGGG	chr14:24616169-24616409(-)$1	240	20	34	11.4473
AUGUCAAUAAACAA	chr15:72491298-72491553(-)$1	255	157	171	10.9087
GGGGCUUCUCCCCC	chr5:175307105-175307348(+)$1	243	73	87	10.6391
UUCCUUUCUCGGAU	chr3:52007711-52008099(-)$1	388	186	200	10.4809
CCCAGCCCCAUGGG	chr7:44807167-44807465(+)$1	298	121	135	12.3898
CCCAUCAUGCUGGG	chr2:27264189-27264462(+)$1	273	177	191	10.6391
CUGCGACCAGGUAG	chr14:24653312-24653604(-)$1	292	62	76	10.6391
ACUGCAGCUCCAGU	chr20:30155926-30156206(+)$1	280	168	182	10.6391
CUCGAUUACCUGAG	chr11:62649142-62649397(+)$1	255	236	250	12.3898
CUGCAUGCACGCAA	chr19:3053199-3053502(-)$1	303	78	92	10.6472
UCCAAUUUACUGGA	chr12:49332430-49332708(-)$1	278	193	207	12.3898
GCUCCUUUGAGAGC	chr19:54969994-54970240(+)$1	246	142	156	12.3898
CCCCAUCUCCGGGG	chr17:36698316-36698569(-)$1	253	180	194	10.6391
GGUGACUUCGUACC	chr19:55901072-55901345(+)$1	273	167	181	12.3898
GUCCCUUCCCGGAC	chr17:16346742-16347103(+)$1	361	250	264	12.3898
UGGCCUCACCGCCU	chr11:45826869-45827177(+)$1	308	212	226	10.2281
GCCCUUCCUUGGGC	chr17:80708545-80708817(+)$1	272	48	62	12.3898
Ggacccagaaguuc	chr19:45452128-45452381(+)$1	253	43	57	12.3898
CUCUCUUCUAAGAG	chr14:24616100-24616352(-)$1	252	76	90	10.6391
UGGCCACCCUGCCA	chr17:42474987-42475216(-)$1	229	52	66	12.3898
CCUGCAAAUCCAGG	chr19:35533050-35533382(+)$1	332	101	115	12.3898
UGGCAGCCCCGCCA	chr19:54971589-54971829(+)$1	240	5	19	12.3898
cgcccagcccggcg	chr12:58005267-58005577(+)$1	310	170	184	10.6391
CUGUGGCUGAGGGG	chr9:130704874-130705106(-)$1	232	7	21	11.0488
GUGUGUCCCAACAC	chr17:41846694-41846987(-)$1	293	135	149	12.3898
CUGGCUGGAACCAU	chr12:50494002-50494352(+)$1	350	268	282	10.6472
CUUGGACACACAGA	chr17:7082635-7082904(-)$1	269	208	222	10.6472
ggccuccccuggcc	chr12:6715737-6716024(-)$1	287	86	100	12.3898
AGGUAAAGCCACCU	chr14:21905055-21905358(-)$1	303	4	18	12.3898
CUUCUCACCUGAAG	chr9:139849663-139849947(+)$1	284	49	63	10.6391
CAGCCCCUCAGCUG	chr16:58699427-58699750(-)$1	323	130	144	12.3898
gccucagcccaggc	chr6:43472836-43473085(+)$1	249	220	234	12.3898
CAGGACUACCCCUG	chr7:1028326-1028639(+)$1	313	296	310	12.3898
CACUUUCACCAGUC	chr14:24028816-24029031(-)$1	215	8	22	10.5761
GCCCGAGGCAGGGU	chr16:28885175-28885449(+)$1	274	241	255	12.3898
GCCGCCCACAUGGU	chr8:27402712-27403028(+)$1	316	272	286	12.3898
cuugaacccccaag	chr6:167356883-167357212(-)$1	329	181	195	12.3898
GAGCUUCCGUGCCU	chr20:62695304-62695554(+)$1	250	19	33	11.4022
UUGCAGUUCAGCAC	chr20:30252884-30253139(-)$1	255	94	108	10.4852
UGAUAACACCGUCA	chrX:148561661-148561920(-)$1	259	191	205	12.3898
GCGUCAUGCCAUGC	chr17:46005416-46005749(+)$1	333	153	167	12.3898

#DB
((((......))))	chr7:917480-917730(+)$1	1	155	169	12.3898
.(((......))).	chr19:43012762-43013056(-)$1	1	103	117	10.6472
((((......))))	chr2:69472424-69472716(+)$1	1	250	264	10.6391
.(((......))).	chr19:3053150-3053399(-)$1	1	23	37	10.6472
((((......))))	chr7:127667243-127667504(+)$1	1	27	41	10.6391
((((......))))	chr19:42758646-42758941(-)$1	1	83	97	9.6788
((((......))))	chr17:36891487-36891832(-)$1	1	25	39	12.3898
.(((......))).	chr3:11888080-11888362(-)$1	1	236	250	9.6698
((((......))))	chr2:110371398-110371678(-)$1	1	192	206	12.3898
((((......))))	chr7:150929535-150929797(+)$1	1	105	119	12.3898
((((......))))	chr9:6925316-6925621(+)$1	1	152	166	10.6391
((.(......).))	chr19:4045138-4045389(-)$1	1	178	192	11.0488
((((......))))	chr16:28914932-28915246(+)$1	1	151	165	12.3898
((((......))))	chr19:4045311-4045593(-)$1	1	54	68	12.3898
((((......))).	chr19:49606465-49606775(+)$1	1	4	18	10.8936
.(((......))).	chr19:39435857-39436275(-)$1	1	39	53	10.6375
((((......))).	chr17:75447274-75447592(+)$1	1	180	194	10.5390
((((......))))	chr2:159314184-159314486(+)$1	1	238	252	12.3898
((((......))))	chr16:69599836-69600149(+)$1	1	193	207	12.3898
((.(......))))	chr14:24616169-24616409(-)$1	1	20	34	11.4473
.(((......))))	chr15:72491298-72491553(-)$1	1	157	171	10.9087
((((......))))	chr5:175307105-175307348(+)$1	1	73	87	10.6391
.(((......))).	chr3:52007711-52008099(-)$1	1	186	200	10.4809
((((......))))	chr7:44807167-44807465(+)$1	1	121	135	12.3898
((((......))))	chr2:27264189-27264462(+)$1	1	177	191	10.6391
((((......))))	chr14:24653312-24653604(-)$1	1	62	76	10.6391
((((......))))	chr20:30155926-30156206(+)$1	1	168	182	10.6391
((((......))))	chr11:62649142-62649397(+)$1	1	236	250	12.3898
.(((......))).	chr19:3053199-3053502(-)$1	1	78	92	10.6472
((((......))))	chr12:49332430-49332708(-)$1	1	193	207	12.3898
((((......))))	chr19:54969994-54970240(+)$1	1	142	156	12.3898
((((......))))	chr17:36698316-36698569(-)$1	1	180	194	10.6391
((((......))))	chr19:55901072-55901345(+)$1	1	167	181	12.3898
((((......))))	chr17:16346742-16347103(+)$1	1	250	264	12.3898
.(((......))).	chr11:45826869-45827177(+)$1	1	212	226	10.2281
((((......))))	chr17:80708545-80708817(+)$1	1	48	62	12.3898
((((......))))	chr19:45452128-45452381(+)$1	1	43	57	12.3898
((((......))))	chr14:24616100-24616352(-)$1	1	76	90	10.6391
((((......))))	chr17:42474987-42475216(-)$1	1	52	66	12.3898
((((......))))	chr19:35533050-35533382(+)$1	1	101	115	12.3898
((((......))))	chr19:54971589-54971829(+)$1	1	5	19	12.3898
((((......))))	chr12:58005267-58005577(+)$1	1	170	184	10.6391
((.(......).))	chr9:130704874-130705106(-)$1	1	7	21	11.0488
((((......))))	chr17:41846694-41846987(-)$1	1	135	149	12.3898
.(((......))).	chr12:50494002-50494352(+)$1	1	268	282	10.6472
.(((......))).	chr17:7082635-7082904(-)$1	1	208	222	10.6472
((((......))))	chr12:6715737-6716024(-)$1	1	86	100	12.3898
((((......))))	chr14:21905055-21905358(-)$1	1	4	18	12.3898
((((......))))	chr9:139849663-139849947(+)$1	1	49	63	10.6391
((((......))))	chr16:58699427-58699750(-)$1	1	130	144	12.3898
((((......))))	chr6:43472836-43473085(+)$1	1	220	234	12.3898
((((......))))	chr7:1028326-1028639(+)$1	1	296	310	12.3898
((((......))).	chr14:24028816-24029031(-)$1	1	8	22	10.5761
((((......))))	chr16:28885175-28885449(+)$1	1	241	255	12.3898
((((......))))	chr8:27402712-27403028(+)$1	1	272	286	12.3898
((((......))))	chr6:167356883-167357212(-)$1	1	181	195	12.3898
((((......).))	chr20:62695304-62695554(+)$1	1	19	33	11.4022
.(((......))))	chr20:30252884-30253139(-)$1	1	94	108	10.4852
((((......))))	chrX:148561661-148561920(-)$1	1	191	205	12.3898
((((......))))	chr17:46005416-46005749(+)$1	1	153	167	12.3898

#PSSM
d : 0.58	e : 0.18	[ : 0.11	# : 0.05	i : 0.01	a : 0.01	" : 0.01	c : 0.01	
d : 0.56	c : 0.23	e : 0.18	i : 0.01	
d : 0.51	c : 0.23	e : 0.18	[ : 0.05	i : 0.01	
d : 0.49	c : 0.23	e : 0.18	a : 0.06	i : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.49	c : 0.23	e : 0.18	a : 0.06	i : 0.01	
d : 0.51	c : 0.23	e : 0.18	] : 0.05	i : 0.01	
d : 0.56	c : 0.23	e : 0.18	i : 0.01	
d : 0.58	e : 0.18	] : 0.13	i : 0.01	5 : 0.01	4 : 0.01	3 : 0.01	> : 0.01	= : 0.01	

#score	691.0073816801255
#seq	60
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514KIW_AATF_UTR_m3_run2.txt

#BEAR
[ggggggg[ammmma]ggggggg]	chr3:133465151-133465428(+)$1	277	89	113	9.8095
ccc[bb!!ccclllccc22bb]cc	chr11:122929963-122930184(-)$1	221	90	114	8.5031
!ffffff[ccclllccc]ffffff	chr6:31804748-31804956(+)$1	208	121	145	8.0669
!!dddd!!bbmmmmbb22dddd]d	chr18:47017963-47018172(-)$1	209	89	113	8.7218
iiiiiiiiinnnnniiiiiiiii5	chr11:75111426-75111679(+)$1	253	71	95	7.7057
cc[a[ccc[ammmma]ccc]a]cc	chr12:125398883-125399120(-)$1	237	53	77	9.3505
ee[a[cccbbmmmmbb22ccc]a]	chr3:13461567-13461855(-)$1	288	26	50	9.6071
ddd[bb[cccmmmmccc]bb]ddd	chr5:180670207-180670479(-)$1	272	127	151	8.1991
ddd####cccmmmmccc333dddd	chr16:89627003-89627219(+)$1	216	130	154	8.6335
iiiiiiiiinnnnniiiiiiiii:	chr16:1413724-1413989(-)$1	265	241	265	7.5606
===[ffffffmmmmffffff333=	chr17:72912792-72913089(-)$1	297	29	53	8.7698
==========lll==========]	chr16:23478554-23478842(-)$1	288	177	201	10.5825
eee[ddddbbmmmmbb]dddd]ee	chr19:49993154-49993363(+)$1	209	52	76	8.1918
e!!ggggggglllggggggg22ee	chr1:178994961-178995236(+)$1	275	132	156	8.0499
:ccc[a[cccmmmmccc]a]ccc:	chr1:155658321-155658569(-)$1	248	85	109	7.5634
gbb[ccccccnnnnnccc]ccc]b	chr15:83424598-83424906(+)$1	308	26	50	6.9089
==========mmmm==========	chr16:89980231-89980509(+)$1	278	247	271	10.9790
ddddggggggglllggggggg]dd	chr3:12881714-12881964(-)$1	250	33	57	7.8311
ccc[ccc[bblllbb]ccc]ccc3	chr17:27047496-27047718(+)$1	222	5	29	8.8364
ggggggg[bbmmmmbb]ggggggg	chr6:74230388-74230636(-)$1	248	120	144	10.4550
a!!eeeeebbmmmmbb333eeeee	chr22:20067945-20068242(+)$1	297	37	61	8.8828
ggggggg[bbmmmmbbgggggggI	chr2:85770357-85770648(+)$1	291	248	272	9.0699
iiiiiiiiinnnnniiiiiiiii5	chr11:75111377-75111607(+)$1	230	120	144	7.7057
:iiiiiiiiimmmmiiiiiiiiiJ	chr20:62330505-62330761(-)$1	256	31	55	7.7322
c!!ddddccclllccc]dddd22c	chr22:19929020-19929366(-)$1	346	320	344	7.2427
eeeea!!cccmmmmccc333a]ee	chr17:8076725-8076952(-)$1	227	192	216	9.2394
""ccc[a!!ammmma22a]ccc22	chr8:30669826-30670090(-)$1	264	49	73	8.6155
==========oooooo========	chr1:28832474-28832697(+)$1	223	136	160	9.8231
fffff!!cccmmmmccc]ffffff	chr5:85916233-85916486(+)$1	253	110	134	8.4930
###eeeeebbmmmmbb]eeeee66	chr17:48827967-48828254(+)$1	287	136	160	7.2361
gg!!ffffffmmmmffffff]ggg	chr1:249151853-249152142(-)$1	289	32	56	8.4474
eee[ddddbbmmmmbb]dddd]ee	chr19:49993167-49993402(+)$1	235	39	63	8.1918
dddd[bb[ccclllccc]bb]ddd	chr18:47017932-47018163(-)$1	231	109	133	7.3302
ddd[ffffffmmmmffffff]ddd	chr19:5140266-5140589(+)$1	323	255	279	7.4141
ggggggg!!bblllbb22gggggg	chr11:116707960-116708207(-)$1	247	166	190	9.2423
eeeee!!ccclllccc22eeeee]	chr1:42643255-42643525(-)$1	270	191	215	7.6581
cc"""bb[bboooooobb]bb]cc	chr17:76124556-76124809(-)$1	253	97	121	7.6101
[bb!!ccc!!a[============	chr1:228327931-228328179(+)$1	248	136	160	6.7197
ffffff[cccoooooocccfffff	chr5:179050127-179050360(-)$1	233	73	97	7.1446
ccc"""ddddmmmmdddd]ccc22	chr6:43752770-43753016(+)$1	246	47	71	7.1618
ggggggg[bbmmmmbb]ggggggg	chr17:37076016-37076317(+)$1	301	256	280	10.4550
!ffffff[ccclllccc]ffffff	chr6:31804756-31804974(+)$1	218	113	137	8.0669
cc[bbbb[bbmmmmbb]bb]bb]c	chr2:21266704-21267036(-)$1	332	261	285	8.0645
cc!!bb"""bblllbb333bb22c	chr6:31804774-31804985(+)$1	211	10	34	8.6204
[ccc[fffffflllffffff22cc	chr6:31802967-31803197(+)$1	230	175	199	6.9920
ggggggg[bbmmmmbb]ggggggg	chr2:158731844-158732189(-)$1	345	249	273	10.4550
!!dddd!!bbmmmmbb22dddd]d	chr18:47017972-47018186(-)$1	214	103	127	8.7218
ccc[ccc[bblllbb]ccc]ccc3	chr17:27047482-27047696(+)$1	214	19	43	8.8364
ee!!bb!!bboooooobb]bb]ee	chr11:5275503-5275744(-)$1	241	172	196	7.5788
==========nnnnn=========	chr1:249151745-249152050(-)$1	305	198	222	9.2405
==========oooooo========	chr11:47379918-47380227(-)$1	309	227	251	9.8231

#otherMatches

#Seq PSSM
AAGCGAGUCCGACUGUGCUCGCUG	chr3:133465151-133465428(+)$1	277	89	113	9.8095
ccaccaaaagcuuggcuaaugaug	chr11:122929963-122930184(-)$1	221	90	114	8.5031
AGACUAGAGUCUCCGAUGCUGGUC	chr6:31804748-31804956(+)$1	208	121	145	8.0669
UCUUAGGACACCUUUGGAUUAAUA	chr18:47017963-47018172(-)$1	209	89	113	8.7218
CUGUGCUGCGUUCUGUGGCACAGU	chr11:75111426-75111679(+)$1	253	71	95	7.7057
GCGUGUGGAGAGACCGCCAAGGGC	chr12:125398883-125399120(-)$1	237	53	77	9.3505
gcUCAUCACCUGCUGGCCUggcgc	chr3:13461567-13461855(-)$1	288	26	50	9.6071
CUGAGUGUCGGUGCUGAAAUCCAG	chr5:180670207-180670479(-)$1	272	127	151	8.1991
GGUCCUGGCCUUUGGGCAUCAUCC	chr16:89627003-89627219(+)$1	216	130	154	8.6335
UCCUGGGGCUGUGUGCCCUGGGGC	chr16:1413724-1413989(-)$1	265	241	265	7.5606
acgugaacgcgugcguguuugugu	chr17:72912792-72913089(-)$1	297	29	53	8.7698
UGGGAAAUGCGAAGCAUUUCUCAU	chr16:23478554-23478842(-)$1	288	177	201	10.5825
CAUGGGCCCCCGCUGGAGGUCAGU	chr19:49993154-49993363(+)$1	209	52	76	8.1918
GGAgccgcuguggcggcggcggcg	chr1:178994961-178995236(+)$1	275	132	156	8.0499
GGAGGUGGAGAAGGCUUGGGCUCG	chr1:155658321-155658569(-)$1	248	85	109	7.5634
ACAUGAUCUUUAUUUGAGUAUCUU	chr15:83424598-83424906(+)$1	308	26	50	6.9089
gugcgcacguauguauguguguac	chr16:89980231-89980509(+)$1	278	247	271	10.9790
CUGGAGAGUGCCUAGUAUUCUGCC	chr3:12881714-12881964(-)$1	250	33	57	7.8311
UGCUACUUUGUUUCAUAGUCGUAU	chr17:27047496-27047718(+)$1	222	5	29	8.8364
GCCGCCGCGUGCGAAUCUGGUGGC	chr6:74230388-74230636(-)$1	248	120	144	10.4550
cccgccucccuccgggaccgaggc	chr22:20067945-20068242(+)$1	297	37	61	8.8828
UAUAGUUACUAAUAAGGACUGUGC	chr2:85770357-85770648(+)$1	291	248	272	9.0699
CUGUGCUGCGUUCUGUGGCACAGU	chr11:75111377-75111607(+)$1	230	120	144	7.7057
CCCUUCCUGCGGAUGUGGGAAGGA	chr20:62330505-62330761(-)$1	256	31	55	7.7322
UAGCCCCCUUCCCAGGUGGGGAAA	chr22:19929020-19929366(-)$1	346	320	344	7.2427
AUCACUUACAUUUGUGUUAUGCUG	chr17:8076725-8076952(-)$1	227	192	216	9.2394
gagggagaggggagcggcgcccgg	chr8:30669826-30670090(-)$1	264	49	73	8.6155
UGGUAAGUGUGAUCAGAUGCUUGC	chr1:28832474-28832697(+)$1	223	136	160	9.8231
AGUAUGAAUGAAUUCAUGAUACUG	chr5:85916233-85916486(+)$1	253	110	134	8.4930
ACAGUGCAGCGUAAGUAUGCACAG	chr17:48827967-48828254(+)$1	287	136	160	7.2361
CUGAGGGUGGCUGGCCACCUGAGU	chr1:249151853-249152142(-)$1	289	32	56	8.4474
CAUGGGCCCCCGCUGGAGGUCAGU	chr19:49993167-49993402(+)$1	235	39	63	8.1918
AACAACUACUCUCUGAGCAGCUGU	chr18:47017932-47018163(-)$1	231	109	133	7.3302
cgaucuccugaggucaggaguucg	chr19:5140266-5140589(+)$1	323	255	279	7.4141
GGGAGCCAACCAUCGGGGGGCUUU	chr11:116707960-116708207(-)$1	247	166	190	9.2423
UGUUGUUUGGACCCUACUUGGCAU	chr1:42643255-42643525(-)$1	270	191	215	7.6581
UCCUCCCCGGCGCCUCCCAGGUGA	chr17:76124556-76124809(-)$1	253	97	121	7.6101
AGUACGACAAGCGCGAUCGCGAGG	chr1:228327931-228328179(+)$1	248	136	160	6.7197
GCCGGGGUGGGUGCAUCCGCCCGG	chr5:179050127-179050360(-)$1	233	73	97	7.1446
CUCAGAUCCUGACAGGGAAGAGGA	chr6:43752770-43753016(+)$1	246	47	71	7.1618
AGAGAAGUUCCUUAGGUUUUCUUU	chr17:37076016-37076317(+)$1	301	256	280	10.4550
AGACUAGAGUCUCCGAUGCUGGUC	chr6:31804756-31804974(+)$1	218	113	137	8.0669
ccugcgcugcugcugcugcugcug	chr2:21266704-21267036(-)$1	332	261	285	8.0645
UUGUGUUUUCUUUGAGUGUACUAG	chr6:31804774-31804985(+)$1	211	10	34	8.6204
UGGCCAAGAUUCCUAAUCUUUUGU	chr6:31802967-31803197(+)$1	230	175	199	6.9920
GGGCUUACCUUCCUAGCUGAGCUU	chr2:158731844-158732189(-)$1	345	249	273	10.4550
UCUUAGGACACCUUUGGAUUAAUA	chr18:47017972-47018186(-)$1	214	103	127	8.7218
UGCUACUUUGUUUCAUAGUCGUAU	chr17:27047482-27047696(+)$1	214	19	43	8.8364
CUGAGUGAACUGCACUGUGACAAG	chr11:5275503-5275744(-)$1	241	172	196	7.5788
CAGGAUCUAGUGUGUCUAGGUUCU	chr1:249151745-249152050(-)$1	305	198	222	9.2405
guuugugugucugucaacacauga	chr11:47379918-47380227(-)$1	309	227	251	9.8231

#DB
.(((((((.(....).))))))).	chr3:133465151-133465428(+)$1	1	89	113	9.8095
(((.((..(((...)))..)).))	chr11:122929963-122930184(-)$1	1	90	114	8.5031
.((((((.(((...))).))))))	chr6:31804748-31804956(+)$1	1	121	145	8.0669
..((((..((....))..)))).)	chr18:47017963-47018172(-)$1	1	89	113	8.7218
(((((((((.....))))))))).	chr11:75111426-75111679(+)$1	1	71	95	7.7057
((.(.(((.(....).))).).))	chr12:125398883-125399120(-)$1	1	53	77	9.3505
((.(.(((((....))..))).).	chr3:13461567-13461855(-)$1	1	26	50	9.6071
(((.((.(((....))).)).)))	chr5:180670207-180670479(-)$1	1	127	151	8.1991
(((....(((....)))...))))	chr16:89627003-89627219(+)$1	1	130	154	8.6335
(((((((((.....))))))))).	chr16:1413724-1413989(-)$1	1	241	265	7.5606
(((.((((((....))))))...)	chr17:72912792-72913089(-)$1	1	29	53	8.7698
((((((((((...)))))))))).	chr16:23478554-23478842(-)$1	1	177	201	10.5825
(((.((((((....)).)))).))	chr19:49993154-49993363(+)$1	1	52	76	8.1918
(..(((((((...)))))))..))	chr1:178994961-178995236(+)$1	1	132	156	8.0499
.(((.(.(((....))).).))).	chr1:155658321-155658569(-)$1	1	85	109	7.5634
)((.((((((.....))).))).)	chr15:83424598-83424906(+)$1	1	26	50	6.9089
((((((((((....))))))))))	chr16:89980231-89980509(+)$1	1	247	271	10.9790
(((((((((((...))))))).))	chr3:12881714-12881964(-)$1	1	33	57	7.8311
(((.(((.((...)).))).))).	chr17:27047496-27047718(+)$1	1	5	29	8.8364
(((((((.((....)).)))))))	chr6:74230388-74230636(-)$1	1	120	144	10.4550
(..(((((((....))...)))))	chr22:20067945-20068242(+)$1	1	37	61	8.8828
(((((((.((....))))))))))	chr2:85770357-85770648(+)$1	1	248	272	9.0699
(((((((((.....))))))))).	chr11:75111377-75111607(+)$1	1	120	144	7.7057
.(((((((((....)))))))))(	chr20:62330505-62330761(-)$1	1	31	55	7.7322
(..(((((((...))).))))..)	chr22:19929020-19929366(-)$1	1	320	344	7.2427
(((((..(((....)))...).))	chr17:8076725-8076952(-)$1	1	192	216	9.2394
..(((.(..(....)..).)))..	chr8:30669826-30670090(-)$1	1	49	73	8.6155
((((((((((......))))))))	chr1:28832474-28832697(+)$1	1	136	160	9.8231
(((((..(((....))).))))))	chr5:85916233-85916486(+)$1	1	110	134	8.4930
...(((((((....)).)))))..	chr17:48827967-48828254(+)$1	1	136	160	7.2361
((..((((((....)))))).)))	chr1:249151853-249152142(-)$1	1	32	56	8.4474
(((.((((((....)).)))).))	chr19:49993167-49993402(+)$1	1	39	63	8.1918
((((.((.(((...))).)).)))	chr18:47017932-47018163(-)$1	1	109	133	7.3302
(((.((((((....)))))).)))	chr19:5140266-5140589(+)$1	1	255	279	7.4141
(((((((..((...))..))))))	chr11:116707960-116708207(-)$1	1	166	190	9.2423
(((((..(((...)))..))))).	chr1:42643255-42643525(-)$1	1	191	215	7.6581
((...((.((......)).)).))	chr17:76124556-76124809(-)$1	1	97	121	7.6101
.((..(((..(.((((((((((((	chr1:228327931-228328179(+)$1	1	136	160	6.7197
((((((.(((......))))))))	chr5:179050127-179050360(-)$1	1	73	97	7.1446
(((...((((....)))).)))..	chr6:43752770-43753016(+)$1	1	47	71	7.1618
(((((((.((....)).)))))))	chr17:37076016-37076317(+)$1	1	256	280	10.4550
.((((((.(((...))).))))))	chr6:31804756-31804974(+)$1	1	113	137	8.0669
((.((((.((....)).)).)).)	chr2:21266704-21267036(-)$1	1	261	285	8.0645
((..((...((...))...))..)	chr6:31804774-31804985(+)$1	1	10	34	8.6204
.(((.((((((...))))))..))	chr6:31802967-31803197(+)$1	1	175	199	6.9920
(((((((.((....)).)))))))	chr2:158731844-158732189(-)$1	1	249	273	10.4550
..((((..((....))..)))).)	chr18:47017972-47018186(-)$1	1	103	127	8.7218
(((.(((.((...)).))).))).	chr17:27047482-27047696(+)$1	1	19	43	8.8364
((..((..((......)).)).))	chr11:5275503-5275744(-)$1	1	172	196	7.5788
((((((((((.....)))))))))	chr1:249151745-249152050(-)$1	1	198	222	9.2405
((((((((((......))))))))	chr11:47379918-47380227(-)$1	1	227	251	9.8231

#PSSM
c : 0.17	e : 0.13	g : 0.13	= : 0.11	d : 0.09	! : 0.07	[ : 0.05	i : 0.05	: : 0.03	f : 0.03	a : 0.01	" : 0.01	# : 0.01	
c : 0.19	g : 0.13	e : 0.11	= : 0.11	! : 0.09	d : 0.09	f : 0.07	i : 0.07	b : 0.03	" : 0.01	# : 0.01	
c : 0.13	d : 0.13	g : 0.11	= : 0.11	! : 0.11	f : 0.07	i : 0.07	e : 0.07	[ : 0.05	b : 0.03	# : 0.01	" : 0.01	
[ : 0.17	g : 0.13	d : 0.09	= : 0.09	f : 0.07	i : 0.07	e : 0.07	! : 0.07	c : 0.05	a : 0.03	" : 0.03	# : 0.01	b : 0.01	
g : 0.15	f : 0.13	b : 0.09	d : 0.09	[ : 0.09	= : 0.09	i : 0.07	c : 0.07	e : 0.05	" : 0.03	# : 0.01	a : 0.01	! : 0.01	
g : 0.15	b : 0.13	f : 0.13	c : 0.11	d : 0.09	= : 0.09	i : 0.07	! : 0.05	e : 0.03	# : 0.01	a : 0.01	[ : 0.01	" : 0.01	
g : 0.15	! : 0.13	f : 0.11	c : 0.11	= : 0.09	i : 0.07	d : 0.07	[ : 0.05	b : 0.05	e : 0.03	# : 0.01	a : 0.01	" : 0.01	
c : 0.23	[ : 0.21	! : 0.11	= : 0.09	i : 0.07	f : 0.07	g : 0.05	d : 0.05	e : 0.03	" : 0.01	
b : 0.31	c : 0.25	= : 0.09	i : 0.07	f : 0.07	! : 0.05	[ : 0.03	g : 0.03	d : 0.01	" : 0.01	
b : 0.35	c : 0.25	= : 0.09	f : 0.07	a : 0.05	n : 0.05	g : 0.03	i : 0.01	! : 0.01	d : 0.01	
m : 0.50	l : 0.11	n : 0.09	o : 0.09	c : 0.07	b : 0.03	g : 0.01	a : 0.01	f : 0.01	
m : 0.50	l : 0.27	n : 0.09	o : 0.09	[ : 0.01	
m : 0.50	l : 0.27	n : 0.09	o : 0.09	= : 0.01	
m : 0.50	l : 0.15	n : 0.09	o : 0.09	= : 0.03	b : 0.03	c : 0.03	g : 0.01	
b : 0.31	c : 0.21	o : 0.09	i : 0.07	f : 0.07	a : 0.05	= : 0.05	g : 0.03	n : 0.03	d : 0.01	
b : 0.27	c : 0.23	o : 0.09	] : 0.07	i : 0.07	f : 0.07	= : 0.07	g : 0.03	2 : 0.01	d : 0.01	
c : 0.27	] : 0.15	2 : 0.11	= : 0.11	g : 0.07	i : 0.07	f : 0.07	3 : 0.03	b : 0.03	d : 0.01	
g : 0.13	2 : 0.11	] : 0.11	= : 0.11	c : 0.09	i : 0.07	3 : 0.07	f : 0.07	d : 0.07	b : 0.05	a : 0.01	e : 0.01	
g : 0.15	f : 0.13	= : 0.11	d : 0.09	c : 0.09	] : 0.09	i : 0.07	3 : 0.07	b : 0.05	e : 0.03	2 : 0.01	a : 0.01	
g : 0.15	f : 0.15	b : 0.11	= : 0.11	d : 0.09	] : 0.09	i : 0.07	c : 0.07	e : 0.05	3 : 0.03	
g : 0.13	c : 0.13	d : 0.11	= : 0.11	b : 0.09	f : 0.07	i : 0.07	] : 0.07	e : 0.05	a : 0.03	2 : 0.03	3 : 0.01	
] : 0.17	g : 0.13	d : 0.11	= : 0.11	c : 0.11	f : 0.07	i : 0.07	2 : 0.07	e : 0.05	3 : 0.01	b : 0.01	
g : 0.13	c : 0.13	e : 0.13	= : 0.11	d : 0.09	f : 0.07	] : 0.07	i : 0.07	2 : 0.07	a : 0.01	3 : 0.01	6 : 0.01	
c : 0.13	d : 0.13	= : 0.11	e : 0.11	g : 0.09	] : 0.07	f : 0.07	5 : 0.03	: : 0.03	3 : 0.03	2 : 0.03	b : 0.01	I : 0.01	J : 0.01	6 : 0.01	

#score	432.1432191458294
#seq	51
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_UTR_m3_run1.txt

#BEAR
""ffffffqqqqqqqqffffff22eee	chr4:100815391-100815671(-)$1	280	128	155	15.4188
cc!!acccqqqqqqqqccc]a333ccc	chr11:118657103-118657328(-)$1	225	190	217	17.5768
gggggg[aqqqqqqqqa]ggggggg]e	chr9:95432089-95432476(-)$1	387	86	113	17.2287
eeeeecccqqqqqqqqccc]eeeeecc	chr15:49913191-49913450(+)$1	259	118	145	16.2575
[ccc[cccqqqqqqqqccccccddddg	chr12:66547045-66547331(-)$1	286	162	189	16.5181
ccc[ddddqqqqqqqqddddccc22cc	chr1:26496328-26496677(+)$1	349	79	106	15.9609
==ffffffqqqqqqqqffffff00000	chr19:59066254-59066471(-)$1	217	152	179	13.7764
bb[eeeeeqqqqqqqqeeeee]bb333	chr20:35207043-35207340(+)$1	297	11	38	15.6475
iiiiiiiiqqqqqqqqiiiiiiiii:d	chr12:121789995-121790254(-)$1	259	141	168	15.7758
ffff!!bbqqqqqqqqbb]ffffff]c	chr6:91296499-91296760(-)$1	261	21	48	14.8128
a####cccqqqqqqqqccc22a]ffff	chr11:70049332-70049625(+)$1	293	142	169	16.4421
eee!!cccqqqqqqqqccc]eeeee]e	chr20:35812493-35812800(+)$1	307	69	96	16.5511
b[ffffffqqqqqqqqffffff]bb]a	chr19:17378154-17378407(+)$1	253	200	227	15.1547
ggggggggqqqqqqqqggggggg]ggg	chr3:42835629-42835868(-)$1	239	28	55	16.8757
ee!!ddddqqqqqqqqdddd4444eee	chrX:140992402-140992673(+)$1	271	133	160	16.0005
========qqqqqqqq==========E	chr8:125551381-125551594(+)$1	213	7	34	16.3616
!gggggggqqqqqqqqggggggg22cc	chr16:85834712-85834925(+)$1	213	80	107	16.6468
e[ccc!!aqqqqqqqqa22ccceeeee	chr21:30671094-30671376(+)$1	282	63	90	15.7363
cc[eeeeeqqqqqqqqeeeee]ccc]c	chr10:74114481-74114761(-)$1	280	124	151	16.7128
gggggggaqqqqqqqqa]ggggggg]d	chr15:41960954-41961246(+)$1	292	83	110	17.1532
c"""cccaqqqqqqqqa]ccc333ccc	chr20:306138-306405(+)$1	267	40	67	17.6175
[ccc[a[aqqqqqqqqa]a22ccc]cc	chr1:26185668-26185970(-)$1	302	246	273	16.8422
fffffcccqqqqqqqqcccggggggg[	chr1:212458782-212459105(+)$1	323	124	151	16.5267
c[eeeeeaqqqqqqqqa]eeeee]ccc	chr17:73900651-73900901(-)$1	250	132	159	16.5617
fff[ddddqqqqqqqqdddd]ffffff	chr1:235291926-235292180(-)$1	254	188	215	15.5900
"""eeeeeqqqqqqqqeeeeeffffff	chr1:38273657-38273942(-)$1	285	141	168	16.0689
cgggggggrrrrrrrrrggggggg]cc	chr15:67813440-67813719(+)$1	279	55	82	10.5929
iiiii!!aqqqqqqqqa22iiiiiiii	chr2:177134193-177134453(+)$1	260	50	77	16.4356
h[ffffffqqqqqqqqffffffhhhhh	chr8:38033798-38034076(-)$1	278	128	155	14.8162
eeee[cccqqqqqqqqccceeeeebb]	chr1:193028731-193028982(+)$1	251	199	226	15.7483
!gggggggqqqqqqqqggggggg]eee	chr19:54692023-54692301(-)$1	278	203	230	16.7791
""ccccccqqqqqqqqccc]ccc]ccc	chr6:116600848-116601162(-)$1	314	106	133	17.2375
ccceeeeeqqqqqqqqeeeee]ccc::	chr17:8286371-8286576(-)$1	205	0	27	14.6121
ddd[ddddqqqqqqqqdddd22dddd:	chr2:136742968-136743216(-)$1	248	28	55	14.1371
:ccc[cccqqqqqqqqcccccceeeee	chr8:41906665-41906916(-)$1	251	100	127	15.5938
eeeccc[aqqqqqqqqa]cccbb!!ff	chr12:51419997-51420265(-)$1	268	147	174	15.2382
i"""ddddqqqqqqqqdddd333iiii	chr3:141462250-141462464(+)$1	214	140	167	16.7788
ddd[ddddqqqqqqqqdddd22dddd]	chr19:54606321-54606598(+)$1	277	110	137	15.0240
cc[eeeeeqqqqqqqqeeeeeccc333	chr7:30544152-30544479(-)$1	327	295	322	16.6689
d!!ccc[aqqqqqqqqa]ccc333ddd	chr11:205853-206120(-)$1	267	28	55	17.0385
e[ffffffqqqqqqqqffffffeeeee	chr19:39971465-39971702(+)$1	237	151	178	15.4417
[ccc[cccqqqqqqqqccc22cccccc	chr16:420396-420619(-)$1	223	54	81	17.1025
[a[eeeeeqqqqqqqqeeeee]a]bb2	chr2:130939734-130939976(+)$1	242	67	94	15.8143
===eeeeeqqqqqqqqeeeee666666	chr1:245027480-245027761(-)$1	281	191	218	13.7601
$$$$ddddqqqqqqqqdddd22ccc]d	chr12:112123551-112123855(-)$1	304	196	223	15.3659
ggg!!cccqqqqqqqqcccgggggggf	chr1:85742026-85742281(-)$1	255	111	138	17.3333
!!ccccccqqqqqqqqccc22ccc22e	chr12:110883161-110883449(-)$1	288	114	141	16.7044
cc!!cccrrrrrrrrrccc22ccc333	chr17:76210295-76210522(+)$1	227	153	180	10.9698
bb[a[cccqqqqqqqqccc]a]bb]a]	chr2:27651397-27651661(+)$1	264	155	182	16.1700
ccc[ddddqqqqqqqqdddd]cccddd	chr9:86571292-86571633(-)$1	341	224	251	15.9939
fffffbbaqqqqqqqqa]bb]ffffff	chr9:115480164-115480398(-)$1	234	69	96	14.8207
========qqqqqqqq===========	chr2:32396284-32396544(+)$1	260	121	148	17.2966
dd[eeeeeqqqqqqqqeeeeeddddee	chr3:23958523-23958761(+)$1	238	128	155	15.3158

#otherMatches

#Seq PSSM
AAGCUGUCCCUGAAGUGACAGCGGAGA	chr4:100815391-100815671(-)$1	280	128	155	15.4188
UGCUGCUUACCGUUCAGAGACUUACAG	chr11:118657103-118657328(-)$1	225	190	217	17.5768
GGGGCGGCAGCUGACAGGCGCUCCUCC	chr9:95432089-95432476(-)$1	387	86	113	17.2287
GGGUGUGCAGGUCUGAGUACCACUCCG	chr15:49913191-49913450(+)$1	259	118	145	16.2575
UCAACAGUUUUUUUAUACUUUGAGUCU	chr12:66547045-66547331(-)$1	286	162	189	16.5181
GGAAGUGCUCACACGUGUGCUCCCUGC	chr1:26496328-26496677(+)$1	349	79	106	15.9609
GGCGUGCGGGCGGCAGCGUACGAGGCC	chr19:59066254-59066471(-)$1	217	152	179	13.7764
CAGGCUCAAGUAAUGCUGAGCAUGUUU	chr20:35207043-35207340(+)$1	297	11	38	15.6475
AAUCCCAUGAUGACCAAUGGGGUUGUG	chr12:121789995-121790254(-)$1	259	141	168	15.7758
ACCCCCGCCACGGAUCGCCGGGUAGUA	chr6:91296499-91296760(-)$1	261	21	48	14.8128
CAAGCGGCGAGACCUGGCCAGGGCCAG	chr11:70049332-70049625(+)$1	293	142	169	16.4421
AAUGGUUGUUUCCCCCCAAGGUUCAAG	chr20:35812493-35812800(+)$1	307	69	96	16.5511
UGGGGCCCGUUCCUAGGGGCCCAGCUC	chr19:17378154-17378407(+)$1	253	200	227	15.1547
UUUAAAUACAUCCAGAUAUUUAAUAAU	chr3:42835629-42835868(-)$1	239	28	55	16.8757
GUGAGGGACACAUACAUCCUAAAAGCA	chrX:140992402-140992673(+)$1	271	133	160	16.0005
UCCCGGCUCUCCGCGCGGCCGGGGAAG	chr8:125551381-125551594(+)$1	213	7	34	16.3616
UACAUUUUUAUCUUUCAGAAUGUUGGC	chr16:85834712-85834925(+)$1	213	80	107	16.6468
CGCAGAAGGGAGGGGGCGGCUGGCCGC	chr21:30671094-30671376(+)$1	282	63	90	15.7363
GAAGCUGAGCGCUGUAUCAGCAUCGCC	chr10:74114481-74114761(-)$1	280	124	151	16.7128
AUUGUGACUAUGUGGUGAUUACAGUUG	chr15:41960954-41961246(+)$1	292	83	110	17.1532
cgcgcggggAGAAAGACACUGAAAGGC	chr20:306138-306405(+)$1	267	40	67	17.6175
GGAGGCGUAAGACGGGAGGAGUUUGGG	chr1:26185668-26185970(-)$1	302	246	273	16.8422
CCCCGGGCGAUGAGGGGCCGGCGUUGA	chr1:212458782-212459105(+)$1	323	124	151	16.5267
GCCGAUGCCCAACAGUGACAUCGACUU	chr17:73900651-73900901(-)$1	250	132	159	16.5617
CGGGGCCCUUUUCAUUGGGUACUGCAU	chr1:235291926-235292180(-)$1	254	188	215	15.5900
GUGGGGUUGAGCGAGGGGCCUGCUGGC	chr1:38273657-38273942(-)$1	285	141	168	16.0689
GGCGCCGGUUGGCCUUCCCGGCGCUCG	chr15:67813440-67813719(+)$1	279	55	82	10.5929
GUCUGAACGUUGGCGGGGCUAGGCUCG	chr2:177134193-177134453(+)$1	260	50	77	16.4356
UCGGGAUUCCGGGCUUGGUCCCACCGA	chr8:38033798-38034076(-)$1	278	128	155	14.8162
UGGGAGCCUUUUGUGCGGCCCCAGGGA	chr1:193028731-193028982(+)$1	251	199	226	15.7483
CCUGGGCCCUCAUUCAGGCCCAGCCCU	chr19:54692023-54692301(-)$1	278	203	230	16.7791
GCUCCCAGUUCGGCCUCUGAGGAAAAC	chr6:116600848-116601162(-)$1	314	106	133	17.2375
CUCCGAGAGACAUAGGUCUCGCGAGAU	chr17:8286371-8286576(-)$1	205	0	27	14.6121
GGAGCCGCACCUCCACGCGGAGUCCGA	chr2:136742968-136743216(-)$1	248	28	55	14.1371
AAGAUGCACAUUUUUCUGCUCUGGAGC	chr8:41906665-41906916(-)$1	251	100	127	15.5938
UGUCAGGUGGUUGCGGAGCUGGUAAGG	chr12:51419997-51420265(-)$1	268	147	174	15.2382
CUGUGUUGGUAUGUUGUAAUUUUGUUC	chr3:141462250-141462464(+)$1	214	140	167	16.7788
CUUCCUCAAGAAUGCCUGGGACAAGGA	chr19:54606321-54606598(+)$1	277	110	137	15.0240
GUGAGUGCCCCCUCCCGCGCUACCCAC	chr7:30544152-30544479(-)$1	327	295	322	16.6689
GGCCGUGCUCACCGAUGGAUGCAACCC	chr11:205853-206120(-)$1	267	28	55	17.0385
GUGGCCCUCUGAAUGUGGGGUCCCUUC	chr19:39971465-39971702(+)$1	237	151	178	15.4417
AGCGGUGGGAGGAGGGCCAGGCGCGGC	chr16:420396-420619(-)$1	223	54	81	17.1025
GCAGCCGCUAGGGGGCGCGGCGGGGCG	chr2:130939734-130939976(+)$1	242	67	94	15.8143
UCGGAGCUGAAAGAGGAGCUCAAGAAG	chr1:245027480-245027761(-)$1	281	191	218	13.7601
UCUCGGCUCGCCUUCCAGCCUCGCCUG	chr12:112123551-112123855(-)$1	304	196	223	15.3659
CGGCCGUCUUUCUCCCGACCCGCUCCG	chr1:85742026-85742281(-)$1	255	111	138	17.3333
GAUCCUGAUACCAAACUCAUCGGAAAC	chr12:110883161-110883449(-)$1	288	114	141	16.7044
CGCAUCUCUACAUUCAAGAACUGGCCC	chr17:76210295-76210522(+)$1	227	153	180	10.9698
CCCGAGCUGGAGCUGAAGCGCAGGCUG	chr2:27651397-27651661(+)$1	264	155	182	16.1700
GGGCUCCUAAAUCCCAGGGAAUCCUCU	chr9:86571292-86571633(-)$1	341	224	251	15.9939
GUCGCGCCCCCUUUAAGAGCAGCGAUU	chr9:115480164-115480398(-)$1	234	69	96	14.8207
GUUACGGGAAUUUAGACUUGUAGCAGC	chr2:32396284-32396544(+)$1	260	121	148	17.2966
CGGCAGCCAUCAGGUAGGCUGCGUUGA	chr3:23958523-23958761(+)$1	238	128	155	15.3158

#DB
..((((((........))))))..)))	chr4:100815391-100815671(-)$1	1	128	155	15.4188
((..((((........))).)...)))	chr11:118657103-118657328(-)$1	1	190	217	17.5768
((((((.(........).))))))).)	chr9:95432089-95432476(-)$1	1	86	113	17.2287
((((((((........))).)))))))	chr15:49913191-49913450(+)$1	1	118	145	16.2575
.(((.(((........))))))))))(	chr12:66547045-66547331(-)$1	1	162	189	16.5181
(((.((((........)))))))..))	chr1:26496328-26496677(+)$1	1	79	106	15.9609
((((((((........)))))).....	chr19:59066254-59066471(-)$1	1	152	179	13.7764
((.(((((........))))).))...	chr20:35207043-35207340(+)$1	1	11	38	15.6475
((((((((........))))))))).(	chr12:121789995-121790254(-)$1	1	141	168	15.7758
((((..((........)).)))))).)	chr6:91296499-91296760(-)$1	1	21	48	14.8128
(....(((........)))..).))))	chr11:70049332-70049625(+)$1	1	142	169	16.4421
(((..(((........))).))))).)	chr20:35812493-35812800(+)$1	1	69	96	16.5511
(.((((((........)))))).)).)	chr19:17378154-17378407(+)$1	1	200	227	15.1547
((((((((........))))))).)))	chr3:42835629-42835868(-)$1	1	28	55	16.8757
((..((((........))))....)))	chrX:140992402-140992673(+)$1	1	133	160	16.0005
((((((((........))))))))))(	chr8:125551381-125551594(+)$1	1	7	34	16.3616
.(((((((........)))))))..))	chr16:85834712-85834925(+)$1	1	80	107	16.6468
(.(((..(........)..))))))))	chr21:30671094-30671376(+)$1	1	63	90	15.7363
((.(((((........))))).))).)	chr10:74114481-74114761(-)$1	1	124	151	16.7128
((((((((........).))))))).)	chr15:41960954-41961246(+)$1	1	83	110	17.1532
(...((((........).)))...)))	chr20:306138-306405(+)$1	1	40	67	17.6175
.(((.(.(........).)..))).))	chr1:26185668-26185970(-)$1	1	246	273	16.8422
)))))(((........)))(((((((.	chr1:212458782-212459105(+)$1	1	124	151	16.5267
(.((((((........).))))).)))	chr17:73900651-73900901(-)$1	1	132	159	16.5617
(((.((((........)))).))))))	chr1:235291926-235292180(-)$1	1	188	215	15.5900
...(((((........)))))))))))	chr1:38273657-38273942(-)$1	1	141	168	16.0689
((((((((.........))))))).))	chr15:67813440-67813719(+)$1	1	55	82	10.5929
(((((..(........)..))))))))	chr2:177134193-177134453(+)$1	1	50	77	16.4356
(.((((((........)))))))))))	chr8:38033798-38034076(-)$1	1	128	155	14.8162
((((.(((........)))))))))).	chr1:193028731-193028982(+)$1	1	199	226	15.7483
.(((((((........))))))).)))	chr19:54692023-54692301(-)$1	1	203	230	16.7791
..((((((........))).))).)))	chr6:116600848-116601162(-)$1	1	106	133	17.2375
((((((((........))))).)))..	chr17:8286371-8286576(-)$1	1	0	27	14.6121
(((.((((........))))..)))).	chr2:136742968-136743216(-)$1	1	28	55	14.1371
.(((.(((........))))))(((((	chr8:41906665-41906916(-)$1	1	100	127	15.5938
)))(((.(........).)))((..((	chr12:51419997-51420265(-)$1	1	147	174	15.2382
(...((((........))))...))))	chr3:141462250-141462464(+)$1	1	140	167	16.7788
(((.((((........))))..)))).	chr19:54606321-54606598(+)$1	1	110	137	15.0240
((.(((((........))))))))...	chr7:30544152-30544479(-)$1	1	295	322	16.6689
(..(((.(........).)))...)))	chr11:205853-206120(-)$1	1	28	55	17.0385
(.((((((........)))))))))))	chr19:39971465-39971702(+)$1	1	151	178	15.4417
.(((.(((........)))..))))))	chr16:420396-420619(-)$1	1	54	81	17.1025
.(.(((((........))))).).)).	chr2:130939734-130939976(+)$1	1	67	94	15.8143
((((((((........)))))......	chr1:245027480-245027761(-)$1	1	191	218	13.7601
....((((........))))..))).)	chr12:112123551-112123855(-)$1	1	196	223	15.3659
(((..(((........))))))))))(	chr1:85742026-85742281(-)$1	1	111	138	17.3333
..((((((........)))..)))..)	chr12:110883161-110883449(-)$1	1	114	141	16.7044
((..(((.........)))..)))...	chr17:76210295-76210522(+)$1	1	153	180	10.9698
((.(.(((........))).).)).).	chr2:27651397-27651661(+)$1	1	155	182	16.1700
(((.((((........)))).))))))	chr9:86571292-86571633(-)$1	1	224	251	15.9939
((((((((........).)).))))))	chr9:115480164-115480398(-)$1	1	69	96	14.8207
((((((((........)))))))))))	chr2:32396284-32396544(+)$1	1	121	148	17.2966
((.(((((........)))))))))))	chr3:23958523-23958761(+)$1	1	128	155	15.3158

#PSSM
c : 0.18	e : 0.13	g : 0.07	[ : 0.07	= : 0.07	f : 0.07	d : 0.07	" : 0.05	b : 0.05	i : 0.05	! : 0.05	a : 0.01	h : 0.01	: : 0.01	$ : 0.01	
c : 0.20	g : 0.13	" : 0.09	e : 0.09	[ : 0.09	= : 0.07	f : 0.07	d : 0.05	b : 0.03	i : 0.03	! : 0.03	# : 0.01	a : 0.01	$ : 0.01	
c : 0.18	f : 0.16	g : 0.13	[ : 0.11	e : 0.09	! : 0.07	= : 0.05	" : 0.05	i : 0.03	d : 0.03	# : 0.01	$ : 0.01	
e : 0.20	c : 0.16	f : 0.15	g : 0.11	! : 0.09	[ : 0.09	i : 0.03	= : 0.03	" : 0.03	# : 0.01	$ : 0.01	a : 0.01	
e : 0.18	d : 0.15	f : 0.13	c : 0.13	g : 0.11	[ : 0.11	! : 0.05	i : 0.03	= : 0.03	a : 0.01	# : 0.01	
c : 0.32	e : 0.16	d : 0.15	g : 0.11	f : 0.09	! : 0.05	= : 0.03	i : 0.01	a : 0.01	b : 0.01	
c : 0.28	e : 0.16	d : 0.15	f : 0.09	g : 0.09	[ : 0.07	b : 0.03	= : 0.03	! : 0.03	i : 0.01	
c : 0.24	a : 0.18	d : 0.15	e : 0.15	f : 0.09	g : 0.07	= : 0.03	i : 0.01	b : 0.01	r : 0.01	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
q : 0.96	r : 0.03	
c : 0.26	a : 0.18	d : 0.15	e : 0.15	f : 0.09	g : 0.05	= : 0.03	i : 0.01	b : 0.01	r : 0.01	
c : 0.26	] : 0.15	d : 0.15	e : 0.15	f : 0.09	g : 0.07	= : 0.03	2 : 0.03	i : 0.01	b : 0.01	
c : 0.32	e : 0.16	d : 0.15	g : 0.11	f : 0.09	= : 0.03	2 : 0.03	i : 0.01	] : 0.01	a : 0.01	b : 0.01	
e : 0.18	g : 0.15	d : 0.15	f : 0.11	c : 0.11	] : 0.09	2 : 0.09	i : 0.03	= : 0.03	b : 0.01	
e : 0.22	g : 0.15	c : 0.15	2 : 0.15	f : 0.11	] : 0.05	a : 0.03	i : 0.03	= : 0.03	4 : 0.01	3 : 0.01	
c : 0.20	f : 0.16	g : 0.15	] : 0.09	3 : 0.07	e : 0.07	2 : 0.05	i : 0.03	= : 0.03	a : 0.01	4 : 0.01	b : 0.01	6 : 0.01	d : 0.01	
c : 0.20	g : 0.15	e : 0.13	3 : 0.07	d : 0.07	f : 0.07	b : 0.05	i : 0.03	] : 0.03	= : 0.03	2 : 0.01	0 : 0.01	4 : 0.01	h : 0.01	a : 0.01	6 : 0.01	
c : 0.16	e : 0.11	g : 0.09	f : 0.09	] : 0.09	d : 0.07	2 : 0.05	3 : 0.05	b : 0.05	i : 0.05	= : 0.03	0 : 0.01	4 : 0.01	h : 0.01	! : 0.01	6 : 0.01	
e : 0.15	c : 0.15	d : 0.11	g : 0.09	f : 0.09	2 : 0.05	3 : 0.05	i : 0.05	b : 0.05	] : 0.05	= : 0.03	0 : 0.01	h : 0.01	! : 0.01	6 : 0.01	
c : 0.18	e : 0.13	] : 0.13	d : 0.09	f : 0.09	3 : 0.05	g : 0.05	: : 0.03	= : 0.03	i : 0.03	b : 0.03	0 : 0.01	h : 0.01	6 : 0.01	2 : 0.01	a : 0.01	
c : 0.22	e : 0.18	f : 0.11	d : 0.09	3 : 0.05	] : 0.05	g : 0.03	i : 0.03	: : 0.03	0 : 0.01	a : 0.01	E : 0.01	[ : 0.01	h : 0.01	2 : 0.01	6 : 0.01	= : 0.01	

#score	840.6080241995044
#seq	53
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_CDS_m3_run2.txt

#BEAR
gggggvvvvvvvvvvvvvggg	chr14:24909146-24909402(-)$1	256	87	108	21.8538
ggggggtttttttttttgggg	chr3:49721307-49721580(-)$1	273	171	192	19.9930
eeeeevvvvvvvvvvvvveee	chr17:1680614-1680849(+)$1	235	23	44	22.8668
hhhhhattttttttttta]hh	chr3:184101256-184101521(+)$1	265	43	64	19.9927
b[cccvvvvvvvvvvvvvccc	chr14:24612503-24612731(-)$1	228	36	57	21.7373
e[ccc^^^^^^^^^^^^^^^^	chr9:117071529-117071789(+)$1	260	168	189	14.2458
eeeeevvvvvvvvvvvvveee	chr17:1680598-1680814(+)$1	216	39	60	22.8668
eeeeebbtttttttttttbb]	chr21:35275751-35276042(-)$1	291	251	272	19.6545
======uuuuuuuuuuuu===	chr10:93768697-93768921(+)$1	224	158	179	21.3309
!!bb[attttttttttta]bb	chr19:49611408-49611760(+)$1	352	100	121	20.1561
:dddduuuuuuuuuuuudddd	chr3:52842059-52842294(+)$1	235	63	84	20.8073
eeeee[assssssssssaeee	chr1:43220552-43220823(-)$1	271	228	249	15.1635
eeeeewwwwwwwwwwwwwwee	chrX:70782750-70782968(+)$1	218	180	201	21.7461
iiiiixxxxxxxxxxxxxxxi	chr3:52842134-52842337(+)$1	203	104	125	15.9295
))ddddtttttttttttdddd	chr12:57106192-57106436(-)$1	244	66	87	19.7798
gggggwwwwwwwwwwwwwwgg	chr9:117069913-117070157(+)$1	244	174	195	20.8734
e!!bbyyyyyyyyyyyyyyyy	chr20:61468470-61468716(+)$1	246	174	195	19.2919
d"""ccctttttttttttccc	chr1:155290210-155290483(+)$1	273	159	180	19.5765
ddddwwwwwwwwwwwwwwddd	chr3:9876873-9877166(+)$1	293	4	25	20.8562
=====xxxxxxxxxxxxxxx=	chr12:30862661-30862939(-)$1	278	221	242	15.9972
gg[bbwwwwwwwwwwwwwwbb	chr5:179264352-179264634(-)$1	282	74	95	19.9089
gggggvvvvvvvvvvvvvggg	chr19:45882858-45883166(-)$1	308	100	121	21.8538
dddd[bbtttttttttttbbd	chr7:151947837-151948071(-)$1	234	50	71	19.2335
ggg:ccctttttttttttccc	chr2:220074016-220074294(+)$1	278	171	192	18.9733
eeeeevvvvvvvvvvvvveee	chr3:132361420-132361656(-)$1	236	142	163	22.8668
""ddddtttttttttttdddd	chr1:153617564-153617821(+)$1	257	102	123	20.7338
eeeeevvvvvvvvvvvvveee	chr3:132277719-132277963(-)$1	244	12	33	22.8668
eeeeevvvvvvvvvvvvveee	chr2:58386413-58386673(-)$1	260	153	174	22.8668
:dddduuuuuuuuuuuudddd	chr3:52842102-52842306(+)$1	204	20	41	20.8073
ee[cccuuuuuuuuuuuuccc	chr20:2815954-2816213(-)$1	259	212	233	21.6808
[dddduuuuuuuuuuuudddd	chr5:79733123-79733379(+)$1	256	30	51	21.7240
eeeeevvvvvvvvvvvvveee	chr17:1680558-1680798(+)$1	240	79	100	22.8668
!!ddddtttttttttttdddd	chr21:35275684-35275951(-)$1	267	40	61	21.0291
eeeee^^^^^^^^^^^^^^^^	chrM:9867-10072(+)$1	205	1	22	14.6936
hhhhhhhttttttttttthhh	chr14:39819238-39819544(+)$1	306	217	238	17.5690
d[ddddtttttttttttdddd	chrM:15732-15940(+)$1	208	127	148	20.9430
eeeee^^^^^^^^^^^^^^^^	chr4:77969434-77969676(-)$1	242	80	101	14.6936
eeeeettttttttttteeeee	chr2:42990383-42990595(-)$1	212	69	90	20.2478
eeeeevvvvvvvvvvvvveee	chr16:31202321-31202532(+)$1	211	115	136	22.8668
d[ddddtttttttttttdddd	chrM:15740-15971(+)$1	231	119	140	20.9430
eeeeyyyyyyyyyyyyyyyye	chr19:14589058-14589357(-)$1	299	138	159	20.1287
:dddduuuuuuuuuuuudddd	chr3:52842106-52842334(+)$1	228	16	37	20.8073
eeeeeuuuuuuuuuuuueeee	chr1:19404368-19404616(-)$1	248	130	151	22.1779
:dddduuuuuuuuuuuudddd	chr3:52842094-52842302(+)$1	208	28	49	20.8073
d[ddddtttttttttttdddd	chrM:15716-15932(+)$1	216	143	164	20.9430
eeeeevvvvvvvvvvvvveee	chr16:31202266-31202521(+)$1	255	170	191	22.8668

#otherMatches

#Seq PSSM
GCUGCCUUAAAGGAAAUUGUA	chr14:24909146-24909402(-)$1	256	87	108	21.8538
AUAAAGCCAUGUUUCCUCUUU	chr3:49721307-49721580(-)$1	273	171	192	19.9930
GCUGGACUAUCACCUUAACCA	chr17:1680614-1680849(+)$1	235	23	44	22.8668
CUGCCCAUCAGGUGCAAGUGG	chr3:184101256-184101521(+)$1	265	43	64	19.9927
GAGCUUUAUCAUAUCAUCAGC	chr14:24612503-24612731(-)$1	228	36	57	21.7373
UGGACAGAUUUUUGAAGCUGG	chr9:117071529-117071789(+)$1	260	168	189	14.2458
GCUGGACUAUCACCUUAACCA	chr17:1680598-1680814(+)$1	216	39	60	22.8668
UUGGAGCAACAAUAAAAAGCU	chr21:35275751-35276042(-)$1	291	251	272	19.6545
GUUUGUCCGCCAACAUUAACA	chr10:93768697-93768921(+)$1	224	158	179	21.3309
gaccgcgagcacaaacggggg	chr19:49611408-49611760(+)$1	352	100	121	20.1561
CAGGGCAAUUCUUCCAACCCU	chr3:52842059-52842294(+)$1	235	63	84	20.8073
CCUUGUGGAAGAGAAGACCAA	chr1:43220552-43220823(-)$1	271	228	249	15.1635
UGUCUAUGUAAAUCCUAAAAG	chrX:70782750-70782968(+)$1	218	180	201	21.7461
UGAGGAGACUUCUCCCACACC	chr3:52842134-52842337(+)$1	203	104	125	15.9295
AUAAGAACCGCUAAUUAUCUU	chr12:57106192-57106436(-)$1	244	66	87	19.7798
GGCUGUCUGCCUCUAUCCCCA	chr9:117069913-117070157(+)$1	244	174	195	20.8734
ACCCUGCUGUAAAAAUCCCUG	chr20:61468470-61468716(+)$1	246	174	195	19.2919
UGCGCGCAAAAUCUACAAGCG	chr1:155290210-155290483(+)$1	273	159	180	19.5765
GGCCAAAGGCAAAUUCAAGGC	chr3:9876873-9877166(+)$1	293	4	25	20.8562
GGAGGUCCUUACUUUUUUGUU	chr12:30862661-30862939(-)$1	278	221	242	15.9972
CCACACACCCCGUCACAUCUG	chr5:179264352-179264634(-)$1	282	74	95	19.9089
UGCUGACACCAUCUCUCCCAG	chr19:45882858-45883166(-)$1	308	100	121	21.8538
CUGAAGAUCAAAUGGUAUUCU	chr7:151947837-151948071(-)$1	234	50	71	19.2335
UCCAGCUGCAUGGAAGAGAGC	chr2:220074016-220074294(+)$1	278	171	192	18.9733
UAACACUUAAUCUUAUUUUGU	chr3:132361420-132361656(-)$1	236	142	163	22.8668
UAUGUCGAAAACAAAAGGACA	chr1:153617564-153617821(+)$1	257	102	123	20.7338
CCUGAUUCUUUUGCUUUUUCA	chr3:132277719-132277963(-)$1	244	12	33	22.8668
GAGACUCUUGAUAUUUCUGUC	chr2:58386413-58386673(-)$1	260	153	174	22.8668
CAGGGCAAUUCUUCCAACCCU	chr3:52842102-52842306(+)$1	204	20	41	20.8073
AUUGCUGUCACCAAUAAAGGC	chr20:2815954-2816213(-)$1	259	212	233	21.6808
AUUCCUAUAAUUACAGUGGAA	chr5:79733123-79733379(+)$1	256	30	51	21.7240
GCUGGACUAUCACCUUAACCA	chr17:1680558-1680798(+)$1	240	79	100	22.8668
GCGCAUUGGCGAGAAAUAUGU	chr21:35275684-35275951(-)$1	267	40	61	21.0291
GCCAACUAAUAUUUCACUUUA	chrM:9867-10072(+)$1	205	1	22	14.6936
GCAAGAAACCUGACAAUAUUU	chr14:39819238-39819544(+)$1	306	217	238	17.5690
AAUUGAAAACAAAAUACUCAA	chrM:15732-15940(+)$1	208	127	148	20.9430
GCAGCCUUUUACCAUCAUCUC	chr4:77969434-77969676(-)$1	242	80	101	14.6936
UGGCGCUCAUCCUCUUUGCUA	chr2:42990383-42990595(-)$1	212	69	90	20.2478
ACUUUAAAUCAGAAUAAAAAA	chr16:31202321-31202532(+)$1	211	115	136	22.8668
AAUUGAAAACAAAAUACUCAA	chrM:15740-15971(+)$1	231	119	140	20.9430
CCGGACCCUGCGAUGAUGACC	chr19:14589058-14589357(-)$1	299	138	159	20.1287
CAGGGCAAUUCUUCCAACCCU	chr3:52842106-52842334(+)$1	228	16	37	20.8073
UUUACAACAUGUUUAAGGUAA	chr1:19404368-19404616(-)$1	248	130	151	22.1779
CAGGGCAAUUCUUCCAACCCU	chr3:52842094-52842302(+)$1	208	28	49	20.8073
AAUUGAAAACAAAAUACUCAA	chrM:15716-15932(+)$1	216	143	164	20.9430
ACUUUAAAUCAGAAUAAAAAA	chr16:31202266-31202521(+)$1	255	170	191	22.8668

#DB
(((((.............)))	chr14:24909146-24909402(-)$1	1	87	108	21.8538
((((((...........))))	chr3:49721307-49721580(-)$1	1	171	192	19.9930
(((((.............)))	chr17:1680614-1680849(+)$1	1	23	44	22.8668
((((((...........).))	chr3:184101256-184101521(+)$1	1	43	64	19.9927
(.(((.............)))	chr14:24612503-24612731(-)$1	1	36	57	21.7373
(.(((................	chr9:117071529-117071789(+)$1	1	168	189	14.2458
(((((.............)))	chr17:1680598-1680814(+)$1	1	39	60	22.8668
(((((((...........)).	chr21:35275751-35276042(-)$1	1	251	272	19.6545
((((((............)))	chr10:93768697-93768921(+)$1	1	158	179	21.3309
..((.(...........).))	chr19:49611408-49611760(+)$1	1	100	121	20.1561
.((((............))))	chr3:52842059-52842294(+)$1	1	63	84	20.8073
(((((.(..........))))	chr1:43220552-43220823(-)$1	1	228	249	15.1635
(((((..............))	chrX:70782750-70782968(+)$1	1	180	201	21.7461
(((((...............)	chr3:52842134-52842337(+)$1	1	104	125	15.9295
..((((...........))))	chr12:57106192-57106436(-)$1	1	66	87	19.7798
(((((..............))	chr9:117069913-117070157(+)$1	1	174	195	20.8734
(..((................	chr20:61468470-61468716(+)$1	1	174	195	19.2919
(...(((...........)))	chr1:155290210-155290483(+)$1	1	159	180	19.5765
((((..............)))	chr3:9876873-9877166(+)$1	1	4	25	20.8562
(((((...............)	chr12:30862661-30862939(-)$1	1	221	242	15.9972
((.((..............))	chr5:179264352-179264634(-)$1	1	74	95	19.9089
(((((.............)))	chr19:45882858-45883166(-)$1	1	100	121	21.8538
((((.((...........)))	chr7:151947837-151948071(-)$1	1	50	71	19.2335
))).(((...........)))	chr2:220074016-220074294(+)$1	1	171	192	18.9733
(((((.............)))	chr3:132361420-132361656(-)$1	1	142	163	22.8668
..((((...........))))	chr1:153617564-153617821(+)$1	1	102	123	20.7338
(((((.............)))	chr3:132277719-132277963(-)$1	1	12	33	22.8668
(((((.............)))	chr2:58386413-58386673(-)$1	1	153	174	22.8668
.((((............))))	chr3:52842102-52842306(+)$1	1	20	41	20.8073
((.(((............)))	chr20:2815954-2816213(-)$1	1	212	233	21.6808
.((((............))))	chr5:79733123-79733379(+)$1	1	30	51	21.7240
(((((.............)))	chr17:1680558-1680798(+)$1	1	79	100	22.8668
..((((...........))))	chr21:35275684-35275951(-)$1	1	40	61	21.0291
(((((................	chrM:9867-10072(+)$1	1	1	22	14.6936
(((((((...........)))	chr14:39819238-39819544(+)$1	1	217	238	17.5690
(.((((...........))))	chrM:15732-15940(+)$1	1	127	148	20.9430
(((((................	chr4:77969434-77969676(-)$1	1	80	101	14.6936
(((((...........)))))	chr2:42990383-42990595(-)$1	1	69	90	20.2478
(((((.............)))	chr16:31202321-31202532(+)$1	1	115	136	22.8668
(.((((...........))))	chrM:15740-15971(+)$1	1	119	140	20.9430
((((................)	chr19:14589058-14589357(-)$1	1	138	159	20.1287
.((((............))))	chr3:52842106-52842334(+)$1	1	16	37	20.8073
(((((............))))	chr1:19404368-19404616(-)$1	1	130	151	22.1779
.((((............))))	chr3:52842094-52842302(+)$1	1	28	49	20.8073
(.((((...........))))	chrM:15716-15932(+)$1	1	143	164	20.9430
(((((.............)))	chr16:31202266-31202521(+)$1	1	170	191	22.8668

#PSSM
e : 0.41	g : 0.13	d : 0.13	: : 0.08	h : 0.04	= : 0.04	! : 0.04	b : 0.02	i : 0.02	) : 0.02	" : 0.02	[ : 0.02	
e : 0.36	d : 0.15	g : 0.13	[ : 0.10	! : 0.06	h : 0.04	= : 0.04	" : 0.04	i : 0.02	) : 0.02	
e : 0.34	d : 0.28	g : 0.10	h : 0.04	c : 0.04	= : 0.04	[ : 0.04	b : 0.02	i : 0.02	! : 0.02	" : 0.02	
e : 0.34	d : 0.28	g : 0.08	c : 0.06	b : 0.06	h : 0.04	= : 0.04	i : 0.02	" : 0.02	: : 0.02	
e : 0.32	d : 0.23	c : 0.10	g : 0.08	h : 0.04	= : 0.04	[ : 0.04	b : 0.04	i : 0.02	w : 0.02	y : 0.02	
v : 0.23	u : 0.13	d : 0.13	w : 0.08	^ : 0.06	c : 0.06	a : 0.04	b : 0.04	x : 0.04	y : 0.04	g : 0.02	= : 0.02	[ : 0.02	h : 0.02	t : 0.02	
v : 0.23	t : 0.21	u : 0.17	w : 0.08	^ : 0.06	b : 0.04	x : 0.04	y : 0.04	c : 0.04	a : 0.02	h : 0.02	
t : 0.32	v : 0.23	u : 0.17	w : 0.08	^ : 0.06	x : 0.04	y : 0.04	s : 0.02	
t : 0.32	v : 0.23	u : 0.17	w : 0.08	^ : 0.06	x : 0.04	y : 0.04	s : 0.02	
t : 0.32	v : 0.23	u : 0.17	w : 0.08	^ : 0.06	x : 0.04	y : 0.04	s : 0.02	
t : 0.32	v : 0.23	u : 0.17	w : 0.08	^ : 0.06	x : 0.04	y : 0.04	s : 0.02	
t : 0.32	v : 0.23	u : 0.17	w : 0.08	^ : 0.06	x : 0.04	y : 0.04	s : 0.02	
t : 0.32	v : 0.23	u : 0.17	w : 0.08	^ : 0.06	x : 0.04	y : 0.04	s : 0.02	
t : 0.32	v : 0.23	u : 0.17	w : 0.08	^ : 0.06	x : 0.04	y : 0.04	s : 0.02	
t : 0.32	v : 0.23	u : 0.17	w : 0.08	^ : 0.06	x : 0.04	y : 0.04	s : 0.02	
t : 0.32	v : 0.23	u : 0.17	w : 0.08	^ : 0.06	x : 0.04	y : 0.04	s : 0.02	
t : 0.30	v : 0.23	u : 0.17	w : 0.08	^ : 0.06	x : 0.04	y : 0.04	s : 0.02	e : 0.02	
v : 0.23	d : 0.23	t : 0.10	w : 0.08	a : 0.06	^ : 0.06	u : 0.04	x : 0.04	y : 0.04	e : 0.04	g : 0.02	
d : 0.26	e : 0.23	c : 0.08	g : 0.06	^ : 0.06	w : 0.06	] : 0.04	b : 0.04	x : 0.04	y : 0.04	= : 0.02	h : 0.02	
e : 0.26	d : 0.26	g : 0.08	c : 0.08	b : 0.08	^ : 0.06	h : 0.04	x : 0.04	y : 0.04	= : 0.02	
e : 0.28	d : 0.28	g : 0.08	c : 0.08	^ : 0.06	h : 0.04	= : 0.04	b : 0.04	] : 0.02	i : 0.02	y : 0.02	

#score	931.8207350734581
#seq	46
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF844VZT_HNRNPU_transcript_m3_run2.txt

#BEAR
fffffrrrrrrrrrffffff	chr11:2718270-2718501(-)$1	231	66	86	9.4863
ggggggpppppppggggggg	chr1:29224390-29224704(+)$1	314	202	222	13.3048
eee[bbpppppppbb]eeee	chr19:39339506-39339823(-)$1	317	41	61	11.7199
b[a[bbrrrrrrrrrbb]a]	chr10:72514369-72514624(+)$1	255	17	37	9.5180
======oooooo========	chr3:47010484-47010756(-)$1	272	10	30	6.7329
a[bb[apppppppa]bb]a]	chr21:45727923-45728227(+)$1	304	24	44	11.4702
ffffffpppppppffffff2	chr11:66135523-66135814(-)$1	291	215	235	11.4947
dd!!cccpppppppcccddd	chr9:117152378-117152658(-)$1	280	259	279	9.7308
[eeeeepppppppeeeee]e	chr12:122620618-122620917(+)$1	299	258	278	11.7146
d[bbbbpppppppbb]bb]d	chr8:41610025-41610330(-)$1	305	246	266	10.6932
:eeeeepppppppeeeee:g	chr7:153105990-153106249(-)$1	259	69	89	9.5639
ggggggssssssssssgggg	chr11:2710486-2710723(-)$1	237	95	115	6.6104
[eeeeerrrrrrrrreeeee	chr17:40853912-40854177(-)$1	265	15	35	9.6800
ggggggpppppppggggggg	chr1:892672-892934(-)$1	262	162	182	13.3048
ggggggpppppppggggggg	chr3:15091848-15092097(-)$1	249	222	242	13.3048
iiiiiiiooooooiiiiiii	chr10:126787783-126788061(-)$1	278	84	104	6.3801
ggggggrrrrrrrrrggggg	chr2:145271736-145271989(-)$1	253	75	95	11.2117
eeddddpppppppdddd]ee	chr11:2687827-2688113(-)$1	286	180	200	11.1478
hh:cccrrrrrrrrrcccdd	chr20:31392139-31392427(+)$1	288	118	138	8.7740
eeddddpppppppdddd22e	chr16:84744472-84744788(+)$1	316	283	303	10.8262
ffffffpppppppffffff5	chr7:142375233-142375498(+)$1	265	187	207	10.8463
ggggggpppppppggggggg	chr7:127723078-127723354(+)$1	276	227	247	13.3048
ccc[cccooooooccc]ccc	chrX:154012586-154012858(-)$1	272	211	231	5.7969
gggggapppppppa]ggggg	chr10:35652456-35652741(+)$1	285	216	236	13.3343
ggggggpppppppggggggg	chr2:236476564-236476848(+)$1	284	63	83	13.3048
gggggggooooooggggggg	chr22:20877217-20877500(+)$1	283	217	237	6.4395
ddd[bbpppppppbbddddf	chr22:42275493-42275740(+)$1	247	18	38	11.0354
ggggggpppppppggggggg	chr12:54806254-54806533(-)$1	279	24	44	13.3048
"""cccpppppppccc]ggg	chrX:73068201-73068438(-)$1	237	157	177	12.7359
ggggggpppppppggggggg	chr9:101554383-101554690(-)$1	307	92	112	13.3048
ffffffpppppppffffff]	chr12:121684599-121684942(-)$1	343	67	87	11.7411
hhh[bbpppppppbb22hhh	chr1:44465393-44465686(-)$1	293	255	275	11.1465
ff[cccpppppppccc]fff	chrX:73044966-73045196(-)$1	230	60	80	12.2983
d[ddddpppppppdddd]dd	chr1:55520978-55521337(+)$1	359	29	49	11.0295
cc[cccrrrrrrrrrccc]c	chr11:2716288-2716531(-)$1	243	1	21	10.3348
ccc[bbpppppppbb]ccc:	chrX:41194443-41194687(+)$1	244	0	20	10.9153
ggggggpppppppggggggg	chr7:100027469-100027794(+)$1	325	110	130	13.3048
[ddddrrrrrrrrrdddd33	chr4:10108870-10109136(-)$1	266	6	26	9.2099
""ddddrrrrrrrrrdddd6	chr4:10112374-10112634(-)$1	260	6	26	8.5864
iiiiirrrrrrrrriiiiii	chr11:2719720-2719949(-)$1	229	72	92	10.9291
ccccccpppppppccc]ccc	chr11:2709742-2709984(-)$1	242	139	159	12.3867
iiiiiipppppppiiiiiii	chr22:19493466-19493737(+)$1	271	229	249	13.1473
======qqqqqqqq======	chr12:54811947-54812203(-)$1	256	232	252	6.8868
eee[bbpppppppbbeeeee	chr15:64753587-64753871(+)$1	284	155	175	11.6606
ee!!bbpppppppbb22eee	chr1:184849721-184849959(-)$1	238	132	152	11.4634
[eeeeepppppppeeeee>>	chr10:126790280-126790562(-)$1	282	62	82	11.1629
gggggggooooooggggggg	chr19:46700866-46701085(-)$1	219	60	80	6.4395
h!!bbrrrrrrrrrbb22hh	chr12:109124206-109124496(-)$1	290	214	234	9.0751
ggggggqqqqqqqqgggggg	chr19:4457099-4457379(-)$1	280	134	154	6.8665
!!bb[apppppppa]bb22c	chr16:27492680-27492951(-)$1	271	166	186	11.2015
gg[cccpppppppccc22gg	chr19:49843200-49843488(-)$1	288	47	67	12.7095

#otherMatches

#Seq PSSM
cuuagaaguuaaaacuaaga	chr11:2718270-2718501(-)$1	231	66	86	9.4863
ugcucaggauagaugagcac	chr1:29224390-29224704(+)$1	314	202	222	13.3048
AAAUGCACUUUUAGCCUUUU	chr19:39339506-39339823(-)$1	317	41	61	11.7199
ugggagggauaggggcugcg	chr10:72514369-72514624(+)$1	255	17	37	9.5180
ACUCUCUGACUUGGGAGUAC	chr3:47010484-47010756(-)$1	272	10	30	6.7329
UACAGGGACGCAGCGUGAGG	chr21:45727923-45728227(+)$1	304	24	44	11.4702
auuguaaugagcaugcaaug	chr11:66135523-66135814(-)$1	291	215	235	11.4947
CUAUGCCCAGCAAUGGCAGC	chr9:117152378-117152658(-)$1	280	259	279	9.7308
Aggccaggcgcaguggcuca	chr12:122620618-122620917(+)$1	299	258	278	11.7146
ggagucaagagcagagcugu	chr8:41610025-41610330(-)$1	305	246	266	10.6932
cugagugguucuagcucaaa	chr7:153105990-153106249(-)$1	259	69	89	9.5639
AGUGGGCUUCUUCCACCCCA	chr11:2710486-2710723(-)$1	237	95	115	6.6104
AGUCCUUAUGUUAUUGGGAU	chr17:40853912-40854177(-)$1	265	15	35	9.6800
UGGCAAUCCUGUCUUGCUAG	chr1:892672-892934(-)$1	262	162	182	13.3048
UAGACAGAAUAAAUGUCUGG	chr3:15091848-15092097(-)$1	249	222	242	13.3048
GCCCUUUUAAUCUGGAGGGC	chr10:126787783-126788061(-)$1	278	84	104	6.3801
CUUUAUAUAAUUUUAAUGAA	chr2:145271736-145271989(-)$1	253	75	95	11.2117
GGAUGUCUCCAAAAUGUCCC	chr11:2687827-2688113(-)$1	286	180	200	11.1478
UCAGCCCCUCUUGUAGGCAC	chr20:31392139-31392427(+)$1	288	118	138	8.7740
AUUCAUUAAGUCCAUGAUUA	chr16:84744472-84744788(+)$1	316	283	303	10.8262
GAUGUUGGAUCAGGACAUCC	chr7:142375233-142375498(+)$1	265	187	207	10.8463
GCAGGAGACAAAGUCCUGCU	chr7:127723078-127723354(+)$1	276	227	247	13.3048
GAGACAAGAAAAGUUGGCUC	chrX:154012586-154012858(-)$1	272	211	231	5.7969
CCUACCUGGCACUGAGUAGG	chr10:35652456-35652741(+)$1	285	216	236	13.3343
UGGUAUGUAAGAAAUGCCAG	chr2:236476564-236476848(+)$1	284	63	83	13.3048
AAUAUAUAUACACAUGUAUU	chr22:20877217-20877500(+)$1	283	217	237	6.4395
GGGACUUGGGAAUAGCCCAU	chr22:42275493-42275740(+)$1	247	18	38	11.0354
UCCCCUCAUAUCAGGGGGAA	chr12:54806254-54806533(-)$1	279	24	44	13.3048
ACCCUUACUACUCAAGACCU	chrX:73068201-73068438(-)$1	237	157	177	12.7359
gugcucagaagaggggcacu	chr9:101554383-101554690(-)$1	307	92	112	13.3048
GUGUGGCGAGGUUUUACAUG	chr12:121684599-121684942(-)$1	343	67	87	11.7411
GGGCUCAGCACCAGACUUCC	chr1:44465393-44465686(-)$1	293	255	275	11.1465
UGAAUAAAUUAUAUGUAUAU	chrX:73044966-73045196(-)$1	230	60	80	12.2983
GUGGGGAAGUGUGCCCUUCU	chr1:55520978-55521337(+)$1	359	29	49	11.0295
cuguuuguguagggaggaga	chr11:2716288-2716531(-)$1	243	1	21	10.3348
CCAGAUUGUCCCUGUGUGGU	chrX:41194443-41194687(+)$1	244	0	20	10.9153
AGGGGGGGUUAGGCCCCCUG	chr7:100027469-100027794(+)$1	325	110	130	13.3048
GUAGCGACGAGUGGGCUGAA	chr4:10108870-10109136(-)$1	266	6	26	9.2099
UCACGUUUCCCACACAUGUU	chr4:10112374-10112634(-)$1	260	6	26	8.5864
GGAUUGGGGUUAGAGGUCUC	chr11:2719720-2719949(-)$1	229	72	92	10.9291
CAGCACAAGAUGAGUGCCUG	chr11:2709742-2709984(-)$1	242	139	159	12.3867
GGACGGAGCUGCCCUGUCUC	chr22:19493466-19493737(+)$1	271	229	249	13.1473
UCCUCUGGCUCUUGGGAGGA	chr12:54811947-54812203(-)$1	256	232	252	6.8868
UCCCUCUGGGGUUGAGGAGG	chr15:64753587-64753871(+)$1	284	155	175	11.6606
UAUGGAAUAAUGAUCAUUAU	chr1:184849721-184849959(-)$1	238	132	152	11.4634
cugaaggcccugacuucacc	chr10:126790280-126790562(-)$1	282	62	82	11.1629
uuugaacccaagaguuuaag	chr19:46700866-46701085(-)$1	219	60	80	6.4395
AAUGCAGAAACCGAGCUCUC	chr12:109124206-109124496(-)$1	290	214	234	9.0751
GGGGUCAGUGGAACGACCUU	chr19:4457099-4457379(-)$1	280	134	154	6.8665
GCCAGCGAUGCAGGGUGAGG	chr16:27492680-27492951(-)$1	271	166	186	11.2015
CCGGGCGAGAAAGGUCAGGG	chr19:49843200-49843488(-)$1	288	47	67	12.7095

#DB
(((((.........))))))	chr11:2718270-2718501(-)$1	1	66	86	9.4863
((((((.......)))))))	chr1:29224390-29224704(+)$1	1	202	222	13.3048
(((.((.......)).))))	chr19:39339506-39339823(-)$1	1	41	61	11.7199
(.(.((.........)).).	chr10:72514369-72514624(+)$1	1	17	37	9.5180
((((((......))))))))	chr3:47010484-47010756(-)$1	1	10	30	6.7329
(.((.(.......).)).).	chr21:45727923-45728227(+)$1	1	24	44	11.4702
((((((.......)))))).	chr11:66135523-66135814(-)$1	1	215	235	11.4947
((..(((.......))))))	chr9:117152378-117152658(-)$1	1	259	279	9.7308
.(((((.......))))).)	chr12:122620618-122620917(+)$1	1	258	278	11.7146
(.((((.......)).)).)	chr8:41610025-41610330(-)$1	1	246	266	10.6932
.(((((.......))))).(	chr7:153105990-153106249(-)$1	1	69	89	9.5639
((((((..........))))	chr11:2710486-2710723(-)$1	1	95	115	6.6104
.(((((.........)))))	chr17:40853912-40854177(-)$1	1	15	35	9.6800
((((((.......)))))))	chr1:892672-892934(-)$1	1	162	182	13.3048
((((((.......)))))))	chr3:15091848-15092097(-)$1	1	222	242	13.3048
(((((((......)))))))	chr10:126787783-126788061(-)$1	1	84	104	6.3801
((((((.........)))))	chr2:145271736-145271989(-)$1	1	75	95	11.2117
((((((.......)))).))	chr11:2687827-2688113(-)$1	1	180	200	11.1478
)).(((.........)))((	chr20:31392139-31392427(+)$1	1	118	138	8.7740
((((((.......))))..)	chr16:84744472-84744788(+)$1	1	283	303	10.8262
((((((.......)))))).	chr7:142375233-142375498(+)$1	1	187	207	10.8463
((((((.......)))))))	chr7:127723078-127723354(+)$1	1	227	247	13.3048
(((.(((......))).)))	chrX:154012586-154012858(-)$1	1	211	231	5.7969
((((((.......).)))))	chr10:35652456-35652741(+)$1	1	216	236	13.3343
((((((.......)))))))	chr2:236476564-236476848(+)$1	1	63	83	13.3048
(((((((......)))))))	chr22:20877217-20877500(+)$1	1	217	237	6.4395
(((.((.......)))))))	chr22:42275493-42275740(+)$1	1	18	38	11.0354
((((((.......)))))))	chr12:54806254-54806533(-)$1	1	24	44	13.3048
...(((.......))).)))	chrX:73068201-73068438(-)$1	1	157	177	12.7359
((((((.......)))))))	chr9:101554383-101554690(-)$1	1	92	112	13.3048
((((((.......)))))).	chr12:121684599-121684942(-)$1	1	67	87	11.7411
(((.((.......))..)))	chr1:44465393-44465686(-)$1	1	255	275	11.1465
((.(((.......))).)))	chrX:73044966-73045196(-)$1	1	60	80	12.2983
(.((((.......)))).))	chr1:55520978-55521337(+)$1	1	29	49	11.0295
((.(((.........))).)	chr11:2716288-2716531(-)$1	1	1	21	10.3348
(((.((.......)).))).	chrX:41194443-41194687(+)$1	1	0	20	10.9153
((((((.......)))))))	chr7:100027469-100027794(+)$1	1	110	130	13.3048
.((((.........))))..	chr4:10108870-10109136(-)$1	1	6	26	9.2099
..((((.........)))).	chr4:10112374-10112634(-)$1	1	6	26	8.5864
(((((.........))))))	chr11:2719720-2719949(-)$1	1	72	92	10.9291
((((((.......))).)))	chr11:2709742-2709984(-)$1	1	139	159	12.3867
((((((.......)))))))	chr22:19493466-19493737(+)$1	1	229	249	13.1473
((((((........))))))	chr12:54811947-54812203(-)$1	1	232	252	6.8868
(((.((.......)))))))	chr15:64753587-64753871(+)$1	1	155	175	11.6606
((..((.......))..)))	chr1:184849721-184849959(-)$1	1	132	152	11.4634
.(((((.......)))))..	chr10:126790280-126790562(-)$1	1	62	82	11.1629
(((((((......)))))))	chr19:46700866-46701085(-)$1	1	60	80	6.4395
(..((.........))..))	chr12:109124206-109124496(-)$1	1	214	234	9.0751
((((((........))))))	chr19:4457099-4457379(-)$1	1	134	154	6.8665
..((.(.......).))..)	chr16:27492680-27492951(-)$1	1	166	186	11.2015
((.(((.......)))..))	chr19:49843200-49843488(-)$1	1	47	67	12.7095

#PSSM
g : 0.29	f : 0.09	e : 0.09	d : 0.07	[ : 0.07	c : 0.07	i : 0.05	h : 0.05	= : 0.03	" : 0.03	b : 0.01	a : 0.01	: : 0.01	! : 0.01	
g : 0.29	e : 0.17	f : 0.09	[ : 0.07	c : 0.07	d : 0.05	i : 0.05	= : 0.03	h : 0.03	" : 0.03	! : 0.03	
g : 0.27	e : 0.11	d : 0.11	f : 0.07	b : 0.05	! : 0.05	i : 0.05	c : 0.05	[ : 0.05	= : 0.03	a : 0.01	: : 0.01	" : 0.01	h : 0.01	
g : 0.27	[ : 0.13	c : 0.11	d : 0.09	f : 0.07	b : 0.07	e : 0.07	i : 0.05	= : 0.03	! : 0.03	
g : 0.27	b : 0.17	c : 0.15	d : 0.09	f : 0.07	e : 0.07	i : 0.05	= : 0.03	[ : 0.03	
g : 0.25	b : 0.15	c : 0.15	r : 0.07	e : 0.07	d : 0.07	a : 0.05	f : 0.05	= : 0.03	i : 0.03	
p : 0.62	r : 0.19	c : 0.03	g : 0.03	q : 0.03	o : 0.01	s : 0.01	i : 0.01	
p : 0.64	r : 0.19	o : 0.09	q : 0.03	s : 0.01	
p : 0.64	r : 0.19	o : 0.09	q : 0.03	s : 0.01	
p : 0.64	r : 0.19	o : 0.09	q : 0.03	s : 0.01	
p : 0.64	r : 0.19	o : 0.09	q : 0.03	s : 0.01	
p : 0.64	r : 0.19	o : 0.09	q : 0.03	s : 0.01	
p : 0.64	r : 0.19	o : 0.07	q : 0.03	= : 0.01	s : 0.01	
r : 0.19	g : 0.19	b : 0.13	c : 0.09	a : 0.05	f : 0.05	e : 0.05	d : 0.05	i : 0.03	q : 0.03	= : 0.01	p : 0.01	s : 0.01	
g : 0.21	b : 0.15	r : 0.11	c : 0.11	f : 0.07	d : 0.07	] : 0.05	e : 0.05	i : 0.05	= : 0.03	s : 0.01	
g : 0.25	c : 0.15	d : 0.11	e : 0.09	f : 0.07	b : 0.07	] : 0.05	i : 0.05	= : 0.03	2 : 0.03	s : 0.01	
g : 0.27	e : 0.11	d : 0.11	f : 0.07	b : 0.07	c : 0.07	] : 0.07	2 : 0.07	i : 0.05	= : 0.03	
g : 0.29	e : 0.13	f : 0.09	c : 0.09	] : 0.07	d : 0.07	2 : 0.07	i : 0.05	= : 0.03	b : 0.01	h : 0.01	
g : 0.31	f : 0.09	e : 0.09	d : 0.09	] : 0.05	i : 0.05	c : 0.05	a : 0.03	= : 0.03	2 : 0.03	h : 0.03	: : 0.01	3 : 0.01	> : 0.01	
g : 0.33	e : 0.13	d : 0.07	c : 0.07	f : 0.05	] : 0.05	i : 0.05	= : 0.03	h : 0.03	2 : 0.01	5 : 0.01	: : 0.01	3 : 0.01	6 : 0.01	> : 0.01	

#score	542.5750876263235
#seq	51
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF322GPD_SF3B1_transcript_m3_run2.txt

#BEAR
ffffffqqqqqqqqfff	chr6:43746055-43746300(+)$1	245	175	192	7.6693
d[cccqqqqqqqqcccd	chr6:43745868-43746083(+)$1	215	170	187	9.0717
heeeeepppppppeeee	chr22:43011194-43011406(+)$1	212	107	124	9.6316
heeeeepppppppeeee	chr22:43011206-43011408(+)$1	202	95	112	9.6316
fffffqqqqqqqqffff	chr11:62609026-62609260(-)$1	234	26	43	8.6208
heeeeepppppppeeee	chr22:43011211-43011418(+)$1	207	90	107	9.6316
ggg[aqqqqqqqqa]gg	chr19:49607732-49607979(+)$1	247	205	222	8.7849
gggggrrrrrrrrrggg	chr19:54972215-54972522(+)$1	307	242	259	8.4751
heeeeepppppppeeee	chr22:43011221-43011459(+)$1	238	80	97	9.6316
d[cccqqqqqqqqcccd	chr6:43745909-43746132(+)$1	223	129	146	9.0717
heeeeepppppppeeee	chr22:43011171-43011394(+)$1	223	130	147	9.6316
ddddddrrrrrrrrrdd	chr8:23425658-23425967(+)$1	309	133	150	7.9366
[ddddqqqqqqqqdddd	chr19:893459-893690(+)$1	231	143	160	9.1720
b[ddddpppppppdddd	chr16:2810104-2810399(+)$1	295	139	156	8.4737
:ddddqqqqqqqqdddd	chr7:99950459-99950764(+)$1	305	268	285	7.9790
ddcccqqqqqqqqccc]	chr19:49607675-49607932(+)$1	257	4	21	8.7979
fffffqqqqqqqqffff	chr11:62609109-62609352(-)$1	243	118	135	8.6208
[eeeeepppppppeeee	chr17:41464595-41464859(-)$1	264	19	36	9.6816

#otherMatches

#Seq PSSM
UAGGAGAGAUGAGCUUC	chr6:43746055-43746300(+)$1	245	175	192	7.6693
CCUCUUUCCUGCUAGAG	chr6:43745868-43746083(+)$1	215	170	187	9.0717
CCUCACUGCUAAUGUGA	chr22:43011194-43011406(+)$1	212	107	124	9.6316
CCUCACUGCUAAUGUGA	chr22:43011206-43011408(+)$1	202	95	112	9.6316
aucaguuuaauaucuga	chr11:62609026-62609260(-)$1	234	26	43	8.6208
CCUCACUGCUAAUGUGA	chr22:43011211-43011418(+)$1	207	90	107	9.6316
CUUGUGGACGUGGAGAG	chr19:49607732-49607979(+)$1	247	205	222	8.7849
CUGGCCCAUCCCAUGCC	chr19:54972215-54972522(+)$1	307	242	259	8.4751
CCUCACUGCUAAUGUGA	chr22:43011221-43011459(+)$1	238	80	97	9.6316
CCUCUUUCCUGCUAGAG	chr6:43745909-43746132(+)$1	223	129	146	9.0717
CCUCACUGCUAAUGUGA	chr22:43011171-43011394(+)$1	223	130	147	9.6316
ACACCCGAUCGCAGAGG	chr8:23425658-23425967(+)$1	309	133	150	7.9366
auuuucccucccagaaa	chr19:893459-893690(+)$1	231	143	160	9.1720
CUGUUCUCCCUUUGAGC	chr16:2810104-2810399(+)$1	295	139	156	8.4737
UGUGCCGACAGAAGCAC	chr7:99950459-99950764(+)$1	305	268	285	7.9790
CGCUGAGAGGAAGCAGA	chr19:49607675-49607932(+)$1	257	4	21	8.7979
aucaguuuaauaucuga	chr11:62609109-62609352(-)$1	243	118	135	8.6208
GCGUCUUGAAUGUAGAU	chr17:41464595-41464859(-)$1	264	19	36	9.6816

#DB
((((((........)))	chr6:43746055-43746300(+)$1	1	175	192	7.6693
(.(((........))))	chr6:43745868-43746083(+)$1	1	170	187	9.0717
)(((((.......))))	chr22:43011194-43011406(+)$1	1	107	124	9.6316
)(((((.......))))	chr22:43011206-43011408(+)$1	1	95	112	9.6316
(((((........))))	chr11:62609026-62609260(-)$1	1	26	43	8.6208
)(((((.......))))	chr22:43011211-43011418(+)$1	1	90	107	9.6316
(((.(........).))	chr19:49607732-49607979(+)$1	1	205	222	8.7849
(((((.........)))	chr19:54972215-54972522(+)$1	1	242	259	8.4751
)(((((.......))))	chr22:43011221-43011459(+)$1	1	80	97	9.6316
(.(((........))))	chr6:43745909-43746132(+)$1	1	129	146	9.0717
)(((((.......))))	chr22:43011171-43011394(+)$1	1	130	147	9.6316
))((((.........))	chr8:23425658-23425967(+)$1	1	133	150	7.9366
.((((........))))	chr19:893459-893690(+)$1	1	143	160	9.1720
(.((((.......))))	chr16:2810104-2810399(+)$1	1	139	156	8.4737
.((((........))))	chr7:99950459-99950764(+)$1	1	268	285	7.9790
(((((........))).	chr19:49607675-49607932(+)$1	1	4	21	8.7979
(((((........))))	chr11:62609109-62609352(-)$1	1	118	135	8.6208
.(((((.......))))	chr17:41464595-41464859(-)$1	1	19	36	9.6816

#PSSM
h : 0.27	d : 0.22	f : 0.16	g : 0.11	[ : 0.11	b : 0.05	: : 0.05	
e : 0.33	d : 0.22	f : 0.16	[ : 0.16	g : 0.11	
e : 0.33	d : 0.22	f : 0.16	c : 0.16	g : 0.11	
e : 0.33	d : 0.22	f : 0.16	c : 0.16	[ : 0.05	g : 0.05	
e : 0.33	d : 0.22	f : 0.16	c : 0.16	a : 0.05	g : 0.05	
q : 0.44	e : 0.33	d : 0.11	f : 0.05	r : 0.05	
q : 0.50	p : 0.38	r : 0.11	
q : 0.50	p : 0.38	r : 0.11	
q : 0.50	p : 0.38	r : 0.11	
q : 0.50	p : 0.38	r : 0.11	
q : 0.50	p : 0.38	r : 0.11	
q : 0.50	p : 0.38	r : 0.11	
q : 0.50	p : 0.38	r : 0.11	
e : 0.33	c : 0.16	d : 0.16	f : 0.11	r : 0.11	q : 0.05	a : 0.05	
e : 0.33	f : 0.16	c : 0.16	d : 0.16	] : 0.05	g : 0.05	r : 0.05	
e : 0.33	d : 0.22	f : 0.16	c : 0.16	g : 0.11	
d : 0.33	e : 0.33	f : 0.16	g : 0.11	] : 0.05	

#score	160.51404747045555
#seq	18
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_transcript_m3_run2.txt

#BEAR
ccc[eeeeeyyyyyyyyyyyyyyyyeeeee]cc	chr1:19455371-19455577(-)$1	206	51	84	24.2997
=[bb[a[cccxxxxxxxxxxxxxxxccc]a]bb	chr6:90513160-90513372(-)$1	212	45	78	21.0040
c!!ccc[eeeeevvvvvvvvvvvvveeeee]cc	chr6:90402669-90402914(-)$1	245	193	226	23.8748
iiiiiiiiiwwwwwwwwwwwwwwiiiiiiiiib	chrX:54949290-54949541(+)$1	251	152	185	24.7862
[eeeee[cccyyyyyyyyyyyyyyyyccceeee	chr16:18852892-18853138(-)$1	246	143	176	24.5933
bb[eeeee[cccuuuuuuuuuuuuccceeeeeb	chr12:57566887-57567118(+)$1	231	160	193	24.1360
============vvvvvvvvvvvvv========	chr2:198267180-198267443(-)$1	263	179	212	26.3519
hhhhhh[eeeeettttttttttteeeee]hhhh	chr7:151927290-151927507(-)$1	217	57	90	22.1019
:iiiiiiiiiwwwwwwwwwwwwwwiiiiiiiii	chr17:5346289-5346542(-)$1	253	190	223	25.2768
==========wwwwwwwwwwwwww=========	chr12:123470125-123470381(-)$1	256	47	80	27.0511
]bb]eeeeecccvvvvvvvvvvvvvccc::eee	chrX:70782731-70782968(+)$1	237	169	202	20.7137
ee[gggggggxxxxxxxxxxxxxxxggggggg2	chr1:1322399-1322627(-)$1	228	170	203	21.5529
ee[cccbbxxxxxxxxxxxxxxxbb]ccc]eee	chr16:31090117-31090359(+)$1	242	116	149	19.0881
eea"""bb[cccvvvvvvvvvvvvvccc]bb44	chr20:61919232-61919564(+)$1	332	64	97	23.8772
ggg!!ggggggguuuuuuuuuuuuggggggg44	chr8:48812840-48813094(-)$1	254	34	67	25.8932
==========wwwwwwwwwwwwww=========	chr16:24834992-24835242(+)$1	250	5	38	27.0511
[==========uuuuuuuuuuuu==========	chr9:116967948-116968172(+)$1	224	168	201	27.2955
ffff"""eeeeeuuuuuuuuuuuueeeee5555	chr4:151842251-151842490(-)$1	239	14	47	22.0000
c####ffffffuuuuuuuuuuuuffffffccc]	chr13:32752335-32752667(+)$1	332	51	84	23.5322
ffff####ddddtttttttttttdddd333fff	chr16:2153504-2153728(-)$1	224	154	187	23.3793
"""iiiiiiiiiuuuuuuuuuuuuiiiiiiiii	chr12:26839313-26839525(-)$1	212	167	200	26.8236
iiiiiiiiixxxxxxxxxxxxxxxiiiiiiiii	chr16:24801094-24801337(+)$1	243	183	216	22.7404
h####ggggggguuuuuuuuuuuuggggggg22	chr17:80755542-80755779(+)$1	237	59	92	25.1068
=========yyyyyyyyyyyyyyyy========	chr13:52524041-52524270(-)$1	229	141	174	27.3354
ffffff[cccwwwwwwwwwwwwwwccc]fffff	chr8:103298548-103298809(-)$1	261	154	187	23.7964
fffff"""dddduuuuuuuuuuuudddd22fff	chr2:32692952-32693234(+)$1	282	166	199	23.6813
dddd!!ffffffuuuuuuuuuuuuffffff22d	chr2:198266368-198266598(-)$1	230	9	42	22.8359
ffff"""bb[bbtttttttttttbbbbffffff	chr1:110882321-110882544(+)$1	223	87	120	22.6758
gggg"""eeeeeuuuuuuuuuuuueeeeegggg	chr16:18482659-18482975(-)$1	316	64	97	25.4514
:ffffff!!ccctttttttttttccc22fffff	chr4:123159355-123159597(+)$1	242	148	181	21.9498
iiiiiiiiixxxxxxxxxxxxxxxiiiiiiiii	chr2:61541933-61542183(-)$1	250	52	85	22.7404
[ccc!!eeeeevvvvvvvvvvvvveeeee]ccc	chr16:15736772-15737026(-)$1	254	13	46	24.2377
eee[eeeee[bbyyyyyyyyyyyyyyyybb]ee	chr2:32639736-32639959(+)$1	223	154	187	22.4101
e####ccc!!bbtttttttttttbb22ccc555	chrX:53619424-53619660(-)$1	236	90	123	21.7071
"""ccc[dddduuuuuuuuuuuudddd333ccc	chr15:64791641-64791919(+)$1	278	92	125	24.7349
iiiiiiii[ccctttttttttttccc]iiiiii	chr13:99045808-99046035(+)$1	227	12	45	25.9263
eeee!!ccc^^^^^^^^^^^^^^^^^^^ccc]e	chr16:2815315-2815594(+)$1	279	17	50	17.7204
[a[ggggggg^^^^^^^^^^^^^^^^^^^^^^^	chr9:116930548-116930787(+)$1	239	44	77	17.3681
####bb[eeeeettttttttttteeeee]bb44	chr2:32626260-32626533(+)$1	273	111	144	23.1299
iiiiiiiii[bbtttttttttttbbiiiiiiii	chr15:43009024-43009253(+)$1	229	50	83	25.8279
c==========uuuuuuuuuuuu==========	chr9:116967972-116968189(+)$1	217	144	177	27.1072
eeeee[ccc[bbwwwwwwwwwwwwwwbb]ccce	chr13:52548843-52549130(-)$1	287	250	283	23.0756
ddhhhhhhhhwwwwwwwwwwwwwwhhhhhhhh4	chr2:32694540-32694780(+)$1	240	72	105	21.5917
=$$$$$bb!!bbtttttttttttbb22bb333=	chr10:21901175-21901414(+)$1	239	91	124	22.6784
adddd!!cccbbtttttttttttbb]ccc22dd	chr17:78320556-78320830(+)$1	274	189	222	23.0418
"""==========ssssssssss==========	chr2:198264771-198264989(-)$1	218	83	116	19.4338
:eeeee!!cccuuuuuuuuuuuuccc]eeeeec	chr2:234378606-234378864(+)$1	258	75	108	23.5421
[eeeee!!ddddtttttttttttdddd4444ee	chr16:2813419-2813660(+)$1	241	168	201	23.3115
[ccc!!cccyyyyyyyyyyyyyyyyccc22ccc	chr9:117054282-117054486(+)$1	204	70	103	25.2772
eeeee[ccc[bbuuuuuuuuuuuubbccceeee	chr9:139368555-139368807(-)$1	252	20	53	24.5250
"===========ttttttttttt==========	chr16:28222745-28222997(-)$1	252	58	91	26.4075
ffffccc[ddddtttttttttttdddd333ccc	chr6:170626444-170626693(+)$1	249	12	45	23.2606

#otherMatches

#Seq PSSM
GACCCUGCCUCAAUUACGAAACGUUGGCGGUGU	chr1:19455371-19455577(-)$1	206	51	84	24.2997
cugugucucaaaaaaaaaaaaaaaGUGAAAGAU	chr6:90513160-90513372(-)$1	212	45	78	21.0040
UUCAGGAUCUGCUCACACGGCUUCUGCAGGCCC	chr6:90402669-90402914(-)$1	245	193	226	23.8748
GAGGGUGGCACUAUACAGCUGAAGUCACCCUUG	chrX:54949290-54949541(+)$1	251	152	185	24.7862
ACCACUAGGAACAAGAUCAGGACUAAUCCAGUG	chr16:18852892-18853138(-)$1	246	143	176	24.5933
CUGCAUGGACUCCAGCGAUGAGAAGAGCUGUGA	chr12:57566887-57567118(+)$1	231	160	193	24.1360
ACuuugucuuuuuuuuuuuuucuuuaggagaca	chr2:198267180-198267443(-)$1	263	179	212	26.3519
GUGAAAAAUAUAACUUCGUAUUCUGUGUAUUUU	chr7:151927290-151927507(-)$1	217	57	90	22.1019
UUUUCUAUGAUAUUUUUUCCUUCUUCGUAGGGA	chr17:5346289-5346542(-)$1	253	190	223	25.2768
AGAACCUCCCACUCAGACUGGCCCGGGAGGUUC	chr12:123470125-123470381(-)$1	256	47	80	27.0511
AAGAACUGUAGCUUUUUAUUUCCUUGCUAUUGU	chrX:70782731-70782968(+)$1	237	169	202	20.7137
GGACCUUGGUGGAUUUGGAAAUGGAACUGAGGG	chr1:1322399-1322627(-)$1	228	170	203	21.5529
CCGCAGCCACUUCCAGAACCAUAGGCCUGGGGA	chr16:31090117-31090359(+)$1	242	116	149	19.0881
UCCUUCCAUUUGACCCAAGAAUCAGCAACUGCA	chr20:61919232-61919564(+)$1	332	64	97	23.8772
CUUAGGUGAGGUUUCCUAUUCUUUAUUUUACAG	chr8:48812840-48813094(-)$1	254	34	67	25.8932
GGACCCCGCAUUAUUCCACAAGCCUGUGGGGUC	chr16:24834992-24835242(+)$1	250	5	38	27.0511
UCUGUGGCCAUGGUGAUGUGAAGAUGGCCACAG	chr9:116967948-116968172(+)$1	224	168	201	27.2955
GUGGUUAAUGAAUUGUUAAUUAUCUUCAUAGCC	chr4:151842251-151842490(-)$1	239	14	47	22.0000
AUUAUGAUGUGAAAAGCCCUUCCCAUGUCUGGA	chr13:32752335-32752667(+)$1	332	51	84	23.5322
GGUGGACUCCAAUCCCUUUCCCUUUGGCUAUAU	chr16:2153504-2153728(-)$1	224	154	187	23.3793
GGAAUGaaaauaauaauauuaauauauuuuuau	chr12:26839313-26839525(-)$1	212	167	200	26.8236
UUCAGUGGUCAACCUCAAAAUAUUACCACUGAA	chr16:24801094-24801337(+)$1	243	183	216	22.7404
UAACAUUAAAAAUCUUUUUUUUUUUUUUUAGGC	chr17:80755542-80755779(+)$1	237	59	92	25.1068
UUUUAAAACUAACUUCAUCUUUCUCGUUUUAGA	chr13:52524041-52524270(-)$1	229	141	174	27.3354
GGCUGUCCGCAACACCCAGCAUCAGCGAGCAGC	chr8:103298548-103298809(-)$1	261	154	187	23.7964
AGCCAGAAAUUGACCAGCAUUUAGCAAUGAUGG	chr2:32692952-32693234(+)$1	282	166	199	23.6813
UAUUGGGUAUCUUAUUCCUCUUAUGGAUGCAGA	chr2:198266368-198266598(-)$1	230	9	42	22.8359
UCCCCGAGCACCAAAAAUUCUUCGGGCGGGGGC	chr1:110882321-110882544(+)$1	223	87	120	22.6758
UCACUCACUGCCUCCCACCGCCCCGGCAGGUGG	chr16:18482659-18482975(-)$1	316	64	97	25.4514
AGGUCAGUAUUCACUUAGAUUUAGAAGCCUGAU	chr4:123159355-123159597(+)$1	242	148	181	21.9498
AUACCAUAUUUUUCUUUCUUAGCUGUGUGGUAU	chr2:61541933-61542183(-)$1	250	52	85	22.7404
gugcggaagcggaagugaagggugcgcuuggcg	chr16:15736772-15737026(-)$1	254	13	46	24.2377
GCAUUCUCCAACAGCCAGAAAAACUUCAGUGGG	chr2:32639736-32639959(+)$1	223	154	187	22.4101
AAAAACUUAUGGAACCGGAAACCCCUGAAGGUA	chrX:53619424-53619660(-)$1	236	90	123	21.7071
ACGCCGAUCUGGAAAAGGACCAGCAGAAACUGG	chr15:64791641-64791919(+)$1	278	92	125	24.7349
UUUGUUUCAUUUAAAACCAAGGAAAAAGAAACA	chr13:99045808-99046035(+)$1	227	12	45	25.9263
CCUGAAGUGAAAGAUAAGCCAAGAGCAGCACCC	chr16:2815315-2815594(+)$1	279	17	50	17.7204
ACUCUGGCAGACCUUUUACCUUCCAGUCCGACC	chr9:116930548-116930787(+)$1	239	44	77	17.3681
GUCGGGGAGCUGCCCUCAUUUUCUAGCUGCUGC	chr2:32626260-32626533(+)$1	273	111	144	23.1299
GAGGCCCUGAUGUUCAGUGCUAUCACAGGGCCU	chr15:43009024-43009253(+)$1	229	50	83	25.8279
UCUGUGGCCAUGGUGAUGUGAAGAUGGCCACAG	chr9:116967972-116968189(+)$1	217	144	177	27.1072
GCUCCAUUGAAGGCAAGGUCCGGAAACUGCAAG	chr13:52548843-52549130(-)$1	287	250	283	23.0756
GUCAAUUUCUUUCUAAUGUCCUUCAGGAAUUGU	chr2:32694540-32694780(+)$1	240	72	105	21.5917
UAACCCCAAGACUUGCUACAUUUGUGAUGAACA	chr10:21901175-21901414(+)$1	239	91	124	22.6784
GACGAUCCCGCCCCCCACAAAAAGGUCGGCUUC	chr17:78320556-78320830(+)$1	274	189	222	23.0418
AUUUGUUUUAUUAUAGGAAAAAUUGAUGGGACA	chr2:198264771-198264989(-)$1	218	83	116	19.4338
GACGUGAAGAGAAAAAAAAAUUCCUCCUGCGUG	chr2:234378606-234378864(+)$1	258	75	108	23.5421
AGUCUAAAGACUCACUAGUUCAAAGUUGCCCUG	chr16:2813419-2813660(+)$1	241	168	201	23.3115
GACUGGUAAUUUUUUGUGUGUUUCUUUAAGGGU	chr9:117054282-117054486(+)$1	204	70	103	25.2772
AGAACUCAGCACAGUCACCAGCAAGUCUGGUUC	chr9:139368555-139368807(-)$1	252	20	53	24.5250
UCCUGCUUUUUCAGUUUCCUUGGGGAGGGGCGG	chr16:28222745-28222997(-)$1	252	58	91	26.4075
GAUCCUUUCCCGGAGUUCAGUUAUGGGUGUGAG	chr6:170626444-170626693(+)$1	249	12	45	23.2606

#DB
(((.(((((................))))).))	chr1:19455371-19455577(-)$1	1	51	84	24.2997
(.((.(.(((...............))).).))	chr6:90513160-90513372(-)$1	1	45	78	21.0040
(..(((.(((((.............))))).))	chr6:90402669-90402914(-)$1	1	193	226	23.8748
(((((((((..............)))))))))(	chrX:54949290-54949541(+)$1	1	152	185	24.7862
.(((((.(((................)))))))	chr16:18852892-18853138(-)$1	1	143	176	24.5933
((.(((((.(((............)))))))))	chr12:57566887-57567118(+)$1	1	160	193	24.1360
((((((((((((.............))))))))	chr2:198267180-198267443(-)$1	1	179	212	26.3519
((((((.(((((...........))))).))))	chr7:151927290-151927507(-)$1	1	57	90	22.1019
.(((((((((..............)))))))))	chr17:5346289-5346542(-)$1	1	190	223	25.2768
((((((((((..............)))))))))	chr12:123470125-123470381(-)$1	1	47	80	27.0511
.)).)))))(((.............)))..(((	chrX:70782731-70782968(+)$1	1	169	202	20.7137
((.(((((((...............))))))).	chr1:1322399-1322627(-)$1	1	170	203	21.5529
((.(((((...............)).))).)))	chr16:31090117-31090359(+)$1	1	116	149	19.0881
(((...((.(((.............))).))..	chr20:61919232-61919564(+)$1	1	64	97	23.8772
(((..(((((((............)))))))..	chr8:48812840-48813094(-)$1	1	34	67	25.8932
((((((((((..............)))))))))	chr16:24834992-24835242(+)$1	1	5	38	27.0511
.((((((((((............))))))))))	chr9:116967948-116968172(+)$1	1	168	201	27.2955
((((...(((((............)))))....	chr4:151842251-151842490(-)$1	1	14	47	22.0000
(....((((((............))))))))).	chr13:32752335-32752667(+)$1	1	51	84	23.5322
((((....((((...........))))...)))	chr16:2153504-2153728(-)$1	1	154	187	23.3793
...(((((((((............)))))))))	chr12:26839313-26839525(-)$1	1	167	200	26.8236
(((((((((...............)))))))))	chr16:24801094-24801337(+)$1	1	183	216	22.7404
(....(((((((............)))))))..	chr17:80755542-80755779(+)$1	1	59	92	25.1068
(((((((((................))))))))	chr13:52524041-52524270(-)$1	1	141	174	27.3354
((((((.(((..............))).)))))	chr8:103298548-103298809(-)$1	1	154	187	23.7964
(((((...((((............))))..)))	chr2:32692952-32693234(+)$1	1	166	199	23.6813
((((..((((((............))))))..)	chr2:198266368-198266598(-)$1	1	9	42	22.8359
((((...((.((...........))))))))))	chr1:110882321-110882544(+)$1	1	87	120	22.6758
((((...(((((............)))))))))	chr16:18482659-18482975(-)$1	1	64	97	25.4514
.((((((..(((...........)))..)))))	chr4:123159355-123159597(+)$1	1	148	181	21.9498
(((((((((...............)))))))))	chr2:61541933-61542183(-)$1	1	52	85	22.7404
.(((..(((((.............))))).)))	chr16:15736772-15737026(-)$1	1	13	46	24.2377
(((.(((((.((................)).))	chr2:32639736-32639959(+)$1	1	154	187	22.4101
(....(((..((...........))..)))...	chrX:53619424-53619660(-)$1	1	90	123	21.7071
...(((.((((............))))...)))	chr15:64791641-64791919(+)$1	1	92	125	24.7349
((((((((.(((...........))).))))))	chr13:99045808-99046035(+)$1	1	12	45	25.9263
((((..(((...................))).)	chr16:2815315-2815594(+)$1	1	17	50	17.7204
.(.(((((((.......................	chr9:116930548-116930787(+)$1	1	44	77	17.3681
....((.(((((...........))))).))..	chr2:32626260-32626533(+)$1	1	111	144	23.1299
(((((((((.((...........))))))))))	chr15:43009024-43009253(+)$1	1	50	83	25.8279
)((((((((((............))))))))))	chr9:116967972-116968189(+)$1	1	144	177	27.1072
(((((.(((.((..............)).))))	chr13:52548843-52549130(-)$1	1	250	283	23.0756
((((((((((..............)))))))).	chr2:32694540-32694780(+)$1	1	72	105	21.5917
(.....((..((...........))..))...)	chr10:21901175-21901414(+)$1	1	91	124	22.6784
)((((..(((((...........)).)))..))	chr17:78320556-78320830(+)$1	1	189	222	23.0418
...((((((((((..........))))))))))	chr2:198264771-198264989(-)$1	1	83	116	19.4338
.(((((..(((............))).)))))(	chr2:234378606-234378864(+)$1	1	75	108	23.5421
.(((((..((((...........))))....))	chr16:2813419-2813660(+)$1	1	168	201	23.3115
.(((..(((................)))..)))	chr9:117054282-117054486(+)$1	1	70	103	25.2772
(((((.(((.((............)))))))))	chr9:139368555-139368807(-)$1	1	20	53	24.5250
.(((((((((((...........))))))))))	chr16:28222745-28222997(-)$1	1	58	91	26.4075
(((((((.((((...........))))...)))	chr6:170626444-170626693(+)$1	1	12	45	23.2606

#PSSM
e : 0.15	= : 0.11	[ : 0.11	f : 0.11	i : 0.09	c : 0.07	" : 0.07	: : 0.05	h : 0.03	g : 0.03	d : 0.03	b : 0.01	] : 0.01	# : 0.01	a : 0.01	
e : 0.19	= : 0.13	f : 0.13	i : 0.11	# : 0.07	c : 0.05	" : 0.05	d : 0.05	b : 0.03	g : 0.03	[ : 0.01	! : 0.01	h : 0.01	a : 0.01	$ : 0.01	
e : 0.13	= : 0.13	f : 0.13	i : 0.11	[ : 0.07	# : 0.07	c : 0.05	" : 0.05	b : 0.03	h : 0.03	g : 0.03	d : 0.03	! : 0.01	a : 0.01	$ : 0.01	
= : 0.15	i : 0.13	e : 0.13	f : 0.13	c : 0.09	# : 0.07	g : 0.05	[ : 0.03	h : 0.03	d : 0.03	b : 0.01	] : 0.01	" : 0.01	! : 0.01	$ : 0.01	
e : 0.17	= : 0.15	i : 0.13	! : 0.09	c : 0.07	" : 0.07	# : 0.07	f : 0.05	h : 0.03	g : 0.03	[ : 0.01	b : 0.01	$ : 0.01	d : 0.01	
= : 0.15	e : 0.13	i : 0.13	c : 0.09	" : 0.09	! : 0.09	g : 0.07	f : 0.05	h : 0.03	[ : 0.03	a : 0.01	# : 0.01	b : 0.01	$ : 0.01	
= : 0.15	[ : 0.13	i : 0.13	c : 0.11	e : 0.09	g : 0.07	" : 0.07	b : 0.05	f : 0.05	! : 0.05	# : 0.01	h : 0.01	
e : 0.19	c : 0.17	= : 0.15	i : 0.13	g : 0.07	b : 0.07	! : 0.05	f : 0.03	# : 0.01	" : 0.01	d : 0.01	h : 0.01	[ : 0.01	
e : 0.17	c : 0.17	= : 0.15	i : 0.11	d : 0.09	g : 0.07	[ : 0.05	! : 0.05	f : 0.03	x : 0.01	b : 0.01	h : 0.01	
c : 0.19	= : 0.13	e : 0.11	d : 0.09	[ : 0.09	g : 0.07	y : 0.05	x : 0.05	i : 0.03	f : 0.03	! : 0.03	w : 0.01	^ : 0.01	h : 0.01	
b : 0.15	e : 0.11	w : 0.11	c : 0.11	x : 0.09	= : 0.09	d : 0.09	y : 0.07	g : 0.03	f : 0.03	^ : 0.03	i : 0.01	
b : 0.15	w : 0.11	x : 0.09	e : 0.09	c : 0.09	u : 0.09	y : 0.07	d : 0.07	= : 0.05	g : 0.03	^ : 0.03	i : 0.01	f : 0.01	v : 0.01	
u : 0.26	t : 0.24	w : 0.13	y : 0.09	x : 0.09	v : 0.09	^ : 0.03	= : 0.01	
u : 0.26	t : 0.24	w : 0.13	y : 0.09	x : 0.09	v : 0.09	^ : 0.03	s : 0.01	
u : 0.26	t : 0.24	w : 0.13	y : 0.09	x : 0.09	v : 0.09	^ : 0.03	s : 0.01	
u : 0.26	t : 0.24	w : 0.13	y : 0.09	x : 0.09	v : 0.09	^ : 0.03	s : 0.01	
u : 0.26	t : 0.24	w : 0.13	y : 0.09	x : 0.09	v : 0.09	^ : 0.03	s : 0.01	
u : 0.26	t : 0.24	w : 0.13	y : 0.09	x : 0.09	v : 0.09	^ : 0.03	s : 0.01	
u : 0.26	t : 0.24	w : 0.13	y : 0.09	x : 0.09	v : 0.09	^ : 0.03	s : 0.01	
u : 0.26	t : 0.24	w : 0.13	y : 0.09	x : 0.09	v : 0.09	^ : 0.03	s : 0.01	
u : 0.26	t : 0.24	w : 0.13	y : 0.09	x : 0.09	v : 0.09	^ : 0.03	s : 0.01	
u : 0.26	t : 0.24	w : 0.13	y : 0.09	x : 0.09	v : 0.09	^ : 0.03	s : 0.01	
u : 0.26	t : 0.24	w : 0.13	y : 0.09	x : 0.09	v : 0.09	^ : 0.03	s : 0.01	
u : 0.17	w : 0.11	b : 0.11	y : 0.09	v : 0.09	x : 0.07	= : 0.07	d : 0.07	c : 0.05	e : 0.03	^ : 0.03	i : 0.01	f : 0.01	
b : 0.13	= : 0.11	y : 0.09	i : 0.09	c : 0.09	e : 0.09	d : 0.09	v : 0.07	x : 0.03	g : 0.03	f : 0.03	^ : 0.03	w : 0.01	h : 0.01	
c : 0.17	= : 0.15	e : 0.13	i : 0.11	d : 0.09	g : 0.05	y : 0.03	] : 0.03	f : 0.03	b : 0.03	2 : 0.03	^ : 0.03	w : 0.01	h : 0.01	
c : 0.19	= : 0.15	e : 0.13	i : 0.11	d : 0.09	g : 0.05	2 : 0.05	f : 0.03	b : 0.03	] : 0.03	^ : 0.03	y : 0.01	h : 0.01	
e : 0.17	c : 0.17	= : 0.15	i : 0.13	g : 0.05	f : 0.05	3 : 0.05	^ : 0.03	b : 0.03	] : 0.01	d : 0.01	2 : 0.01	y : 0.01	h : 0.01	4 : 0.01	
= : 0.15	e : 0.13	i : 0.13	c : 0.11	] : 0.09	f : 0.09	g : 0.05	3 : 0.05	2 : 0.03	b : 0.03	: : 0.01	^ : 0.01	h : 0.01	4 : 0.01	
= : 0.15	i : 0.13	e : 0.11	g : 0.07	c : 0.07	3 : 0.07	f : 0.07	b : 0.05	2 : 0.05	h : 0.03	] : 0.03	a : 0.01	: : 0.01	5 : 0.01	^ : 0.01	4 : 0.01	
= : 0.15	i : 0.13	c : 0.13	e : 0.11	f : 0.09	] : 0.07	g : 0.07	h : 0.03	b : 0.03	5 : 0.03	2 : 0.03	^ : 0.01	3 : 0.01	4 : 0.01	
c : 0.15	e : 0.15	= : 0.15	i : 0.13	f : 0.09	4 : 0.05	h : 0.03	g : 0.03	5 : 0.03	2 : 0.03	b : 0.01	] : 0.01	^ : 0.01	3 : 0.01	d : 0.01	
= : 0.17	e : 0.15	c : 0.13	i : 0.11	f : 0.09	4 : 0.07	b : 0.05	2 : 0.03	5 : 0.03	d : 0.03	h : 0.01	] : 0.01	g : 0.01	^ : 0.01	

#score	1229.3135594000014
#seq	52
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF481RZR_NCBP2_transcript_m2_run2.txt

#BEAR
f:FFFFFF}EEEEEYYCCC}GG	chr4:6998896-6999155(+)$1	259	226	248	10.4788
GGGGGGG}EEEEE}CCCEEEEE	chr7:148580695-148580982(-)$1	287	224	246	11.6052
D}EEEEE}A}DDDD}A}A}CCC	chr19:6739607-6739900(+)$1	293	220	242	10.8604
HHHH}CCCYYDDDD}EEEEE::	chr1:39753047-39753335(+)$1	288	265	287	11.3314
}FFFFFFZZZCCC~~~~DDDD}	chr14:96968695-96968950(+)$1	255	184	206	13.7732
EEEEEBB}A}DDDD}EEEEEJJ	chr4:38666206-38666477(+)$1	271	222	244	11.3991
GGGGGGGEEEEEZZZDDDD}CC	chr17:76123907-76124141(-)$1	234	208	230	11.3336
GGGGGGG}AYYEEEEEFFFFFF	chr1:11072611-11072901(+)$1	290	249	271	12.4529
YYFFFFFF}EEEEE}FFFFFF=	chr19:5719967-5720250(-)$1	283	142	164	10.8318
YFFFFFFYYAYYFFFFFF::::	chr6:43745342-43745605(+)$1	263	241	263	10.0442
GGGGG}AZZZDDDD}A}AIIII	chr22:38902133-38902411(-)$1	278	237	259	12.3568
AFFFFFF}BBYYCCCBB}CCC}	chr7:158622049-158622304(-)$1	255	165	187	11.9052
EEE}CCC}A}DDDDEEEEE}DD	chr10:7452754-7453066(-)$1	312	256	278	10.7703
GGGGGGGZZZFFFFFF}BBA}B	chr17:55333991-55334261(+)$1	270	168	190	11.6283
cDDDD}AYYEEEEE}DDDD}A}	chr16:88729360-88729637(-)$1	277	250	272	11.2367
YFFFFFF}EEEEECCCYYJJJJ	chr12:7052894-7053148(+)$1	254	215	237	11.0983
}FFFFFFZZZDDDDZZZBB}EE	chr19:15442557-15442794(-)$1	237	191	213	13.7951
FFFF}BBZZZEEEEEYYEEEEE	chrX:153686525-153686889(+)$1	364	330	352	13.8534
HHHHCCC}BBDDDD}EEEEE}D	chr1:40626956-40627284(+)$1	328	253	275	11.8913
HHHH}BBZZZEEEEEYYFFFFF	chr2:85768646-85768907(+)$1	261	198	220	13.0153
GGGGG}BBYYBBBB}DDDD}BB	chr20:34252555-34252826(-)$1	271	223	245	12.7834
ZFFFFFF}A}BB}BBFFFFFFY	chr16:9185473-9185734(+)$1	261	215	237	11.6778
GGGGGGG}EEEEE~~~~BB}FF	chr1:1310383-1310624(-)$1	241	89	111	12.9393
FFFFFFYYBB}FFFFFF}A}FF	chr2:70056769-70057064(+)$1	295	253	275	11.5635
GGGGGGG~~~~A}CCC~~~~DD	chr10:101379907-101380260(-)$1	353	316	338	11.5898
}EEEEEYYBBYYAYYDDDD}HH	chr2:28974739-28975051(+)$1	312	238	260	11.5210
HHHHHHHHYYDDDDBB}EEEEE	chr17:80041204-80041461(-)$1	257	212	234	11.7375
YYDDDD~~~~DDDD}DDDDYYC	chr19:18548149-18548396(-)$1	247	213	235	10.6247
HHHHHHHZZZBB}EEEEE}BBZ	chr16:30134333-30134598(-)$1	265	171	193	12.5974
HHHHHHHHEEEEEFFFFFFFFF	chr2:20550296-20550592(-)$1	296	266	288	10.2513
ZFFFFFFYYCCCZZZDDDD}CC	chr9:91926080-91926310(+)$1	230	207	229	11.9638
}FFFFFFZZZDDDD}DDDD}CC	chr9:15422774-15423066(+)$1	292	250	272	14.5021
}FFFFFFA}DDDDYYDDDDYYC	chr17:74733264-74733513(-)$1	249	176	198	13.0419
DDDD}CCC}EEEEE}EEEEEYY	chr17:27717263-27717509(+)$1	246	219	241	10.7411
:FFFFFFYYFFFFFF}BBZZZF	chr11:65343548-65343817(+)$1	269	242	264	10.4260
A}FFFFFFYYEEEEEDDDD:::	chr7:150756615-150756911(+)$1	296	274	296	11.4820
GG}DDDDZZZCCCEEEEEYYCC	chr21:35287924-35288197(-)$1	273	244	266	11.0949
FFFFFFZZZEEEEEZZZDDDD}	chrX:152957483-152957736(+)$1	253	219	241	12.8158
HHHHHHHH}EEEEE}DDDDGGG	chr5:137688271-137688538(+)$1	267	184	206	11.0936
DDEEEEE~~~~FFFFFF}CCCZ	chr15:89878238-89878465(+)$1	227	197	219	9.4387
GGGGGGGYYBBYYFFFFFFJJJ	chr11:14520976-14521223(-)$1	247	181	203	10.7589
YFFFFFFDDDDYYA}BB}A}GG	chr21:37692563-37692854(+)$1	291	260	282	10.4350
ZZFFFFFF}EEEEE}EEEEEEE	chr3:122785815-122786174(+)$1	359	279	301	12.1799
JJJJJJJZZZCCC~~~~CCC}D	chr11:9335978-9336286(-)$1	308	278	300	11.2709
FFFFCCC}CCC~~~~DDDD}CC	chr2:74405843-74406102(-)$1	259	202	224	11.5687
FFFFFFFFF}A}BB}FFFFFF:	chr5:137688338-137688618(+)$1	280	257	279	10.9418
IIIIIIIZZZDDDDZZZBB~~~	chr10:103578019-103578291(-)$1	272	227	249	12.2262
DDDD}BBZZZDDDD}EEEEE}A	chr19:572481-572715(+)$1	234	186	208	11.8367
GGGGGG~~~~CCCYYDDDD:::	chr17:41154589-41154822(+)$1	233	207	229	10.8768
::FFFFFF}EEEEE}BBFFFFF	chr16:88799056-88799287(-)$1	231	81	103	11.6732
}BB}A}A}BB}BBYYDDDD}BB	chr6:34664393-34664666(-)$1	273	228	250	11.5839
HHHHHHHZZZBB}EEEEEBBYY	chr2:172379362-172379597(+)$1	235	169	191	12.9438
EEEEE}BBEEEEEYYDDDDYYF	chr7:44887469-44887718(-)$1	249	221	243	11.5361
GGGGG}BBYYDDDD}BBEEEEE	chr19:40791074-40791368(-)$1	294	167	189	12.8503
JJJJJJJJZZZBBYYDDDD}A}	chr17:76123312-76123549(-)$1	237	212	234	11.3838
GGGGGGG~~~~CCC}AYYGGGG	chr7:139044592-139044860(+)$1	268	240	262	10.8861

#otherMatches

#Seq PSSM
gcgcguggaucaccugaguugg	chr4:6998896-6999155(+)$1	259	226	248	10.4788
GAGGGGAAGGGGCAUGACAccc	chr7:148580695-148580982(-)$1	287	224	246	11.6052
CUUUGCUGGGGUCCAGGCACCC	chr19:6739607-6739900(+)$1	293	220	242	10.8604
UUUGUGUUCCCUGUGCAGAUUC	chr1:39753047-39753335(+)$1	288	265	287	11.3314
GGCGGCGGUUGCGGGGGGGAAG	chr14:96968695-96968950(+)$1	255	184	206	13.7732
GCCUCCUCCCGCCCGCUCACGA	chr4:38666206-38666477(+)$1	271	222	244	11.3991
CACCCAGGACACUGAGGGAGGG	chr17:76123907-76124141(-)$1	234	208	230	11.3336
GGCCCGAGGCAGACGCAGCGGC	chr1:11072611-11072901(+)$1	290	249	271	12.4529
AGCGGCGCGGUGCUGGGUGCUG	chr19:5719967-5720250(-)$1	283	142	164	10.8318
GGUUCCCAGCAAGCCCCAACCA	chr6:43745342-43745605(+)$1	263	241	263	10.0442
GGUGGCGUCUGCGACGGGAGAC	chr22:38902133-38902411(-)$1	278	237	259	12.3568
GCCGGGAGGGCAGCGCGGCACU	chr7:158622049-158622304(-)$1	255	165	187	11.9052
GCCGGCUGCUGUCCCCGGCGCC	chr10:7452754-7453066(-)$1	312	256	278	10.7703
CCCCGGGUAAGUUUCCAGCCGC	chr17:55333991-55334261(+)$1	270	168	190	11.6283
UGGCCGGGAGCGAGGCCGGGUA	chr16:88729360-88729637(-)$1	277	250	272	11.2367
UUGAUGCAGUUGUAAGCUUGGG	chr12:7052894-7053148(+)$1	254	215	237	11.0983
GGUCCGCGGUCCUCUAGGCGGG	chr19:15442557-15442794(-)$1	237	191	213	13.7951
UGGGGGUCAGGCCCUAUCCCUG	chrX:153686525-153686889(+)$1	364	330	352	13.8534
UCGGGACUGCGGCCGUGUCUGU	chr1:40626956-40627284(+)$1	328	253	275	11.8913
GAAGACAUUGGUGCUGGAGACC	chr2:85768646-85768907(+)$1	261	198	220	13.0153
CGGAGGCCUUCGAGCCCGCGGC	chr20:34252555-34252826(-)$1	271	223	245	12.7834
AGGCCUGGGGCGGGGGUCGUCC	chr16:9185473-9185734(+)$1	261	215	237	11.6778
AGGUCGGGCUUGGGAAGGGUCA	chr1:1310383-1310624(-)$1	241	89	111	12.9393
CCAUGGGAUCGUUGAGCAGCCG	chr2:70056769-70057064(+)$1	295	253	275	11.5635
GGCCCCCGGUACGACAAGAUCC	chr10:101379907-101380260(-)$1	353	316	338	11.5898
CUGUGCCGACAAGAUGGCGGAC	chr2:28974739-28975051(+)$1	312	238	260	11.5210
GUUCUUCAACGAGAGCAGUGCU	chr17:80041204-80041461(-)$1	257	212	234	11.7375
GGGGGCGGGGCCUGGCUGCAGG	chr19:18548149-18548396(-)$1	247	213	235	10.6247
CGUUCGACGUGGGCCCGCGCUA	chr16:30134333-30134598(-)$1	265	171	193	12.5974
UCCUUUGGCGCCGUCGAGGAUG	chr2:20550296-20550592(-)$1	296	266	288	10.2513
CGAGCCGGCUCCCUCAgccggg	chr9:91926080-91926310(+)$1	230	207	229	11.9638
CUGUGGCGGGGCCGUCUGCGCG	chr9:15422774-15423066(+)$1	292	250	272	14.5021
GCGGAAGGCAACUGCCUGAGAG	chr17:74733264-74733513(-)$1	249	176	198	13.0419
UCCCGCUCGCCCUGCGCCCUUC	chr17:27717263-27717509(+)$1	246	219	241	10.7411
GCGCCUGCAGCGCGUGGGCAAG	chr11:65343548-65343817(+)$1	269	242	264	10.4260
gagggaggaagggagggggaag	chr7:150756615-150756911(+)$1	296	274	296	11.4820
GCGAUGCUUCGGCUGGGGAAGU	chr21:35287924-35288197(-)$1	273	244	266	11.0949
CUCCCCACCCUGCAAAUCCAGG	chrX:152957483-152957736(+)$1	253	219	241	12.8158
cgggagcgcgggucaggccggc	chr5:137688271-137688538(+)$1	267	184	206	11.0936
AUGUGAACGUAGUCGCCGCCGA	chr15:89878238-89878465(+)$1	227	197	219	9.4387
ACCCCUAGGCGUACCCUUUCAG	chr11:14520976-14521223(-)$1	247	181	203	10.7589
CGGGGCGGGCCAGGGUCGCGGC	chr21:37692563-37692854(+)$1	291	260	282	10.4350
UGUCCCGCGUGCCCUUCUGCGC	chr3:122785815-122786174(+)$1	359	279	301	12.1799
CCCUUCACCUUGCAGCAGCCAU	chr11:9335978-9336286(-)$1	308	278	300	11.2709
CUGCCCGUGAGCUAAGGACGGU	chr2:74405843-74406102(-)$1	259	202	224	11.5687
CCGGGGCCUGCGCUGCGCACUC	chr5:137688338-137688618(+)$1	280	257	279	10.9418
UUCCAGGGAACGAGAGGUCACA	chr10:103578019-103578291(-)$1	272	227	249	12.2262
GCGCUGCUGGGCACCCACGGAG	chr19:572481-572715(+)$1	234	186	208	11.8367
AGAGGUAAGUAGGCUUUGGUAG	chr17:41154589-41154822(+)$1	233	207	229	10.8768
GGCUCCGGGCAGGGCCAGGGGG	chr16:88799056-88799287(-)$1	231	81	103	11.6732
gcggcgcggcggcggcUUGGUU	chr6:34664393-34664666(-)$1	273	228	250	11.5839
CUUGGUUAACUCUUUGCGGCGA	chr2:172379362-172379597(+)$1	235	169	191	12.9438
CCGCUACCUGUGGAGUCGGGAG	chr7:44887469-44887718(-)$1	249	221	243	11.5361
ccgcugccggcgccguugccgc	chr19:40791074-40791368(-)$1	294	167	189	12.8503
CUGUGCCAGAACCCUGGGCAUG	chr17:76123312-76123549(-)$1	237	212	234	11.3838
GGAGCGCAGUCCGGACUCUUCC	chr7:139044592-139044860(+)$1	268	240	262	10.8861

#DB
).)))))).)))))..))).))	chr4:6998896-6999155(+)$1	1	226	248	10.4788
))))))).))))).))))))))	chr7:148580695-148580982(-)$1	1	224	246	11.6052
).))))).).)))).).).)))	chr19:6739607-6739900(+)$1	1	220	242	10.8604
)))).)))..)))).)))))..	chr1:39753047-39753335(+)$1	1	265	287	11.3314
.))))))...)))....)))).	chr14:96968695-96968950(+)$1	1	184	206	13.7732
))))))).).)))).)))))))	chr4:38666206-38666477(+)$1	1	222	244	11.3991
))))))))))))...)))).))	chr17:76123907-76124141(-)$1	1	208	230	11.3336
))))))).)..)))))))))))	chr1:11072611-11072901(+)$1	1	249	271	12.4529
..)))))).))))).))))))(	chr19:5719967-5720250(-)$1	1	142	164	10.8318
.))))))..)..))))))....	chr6:43745342-43745605(+)$1	1	241	263	10.0442
))))).)...)))).).)))))	chr22:38902133-38902411(-)$1	1	237	259	12.3568
))))))).))..))))).))).	chr7:158622049-158622304(-)$1	1	165	187	11.9052
))).))).).))))))))).))	chr10:7452754-7453066(-)$1	1	256	278	10.7703
)))))))...)))))).))).)	chr17:55333991-55334261(+)$1	1	168	190	11.6283
))))).)..))))).)))).).	chr16:88729360-88729637(-)$1	1	250	272	11.2367
.)))))).))))))))..))))	chr12:7052894-7053148(+)$1	1	215	237	11.0983
.))))))...))))...)).))	chr19:15442557-15442794(-)$1	1	191	213	13.7951
)))).))...)))))..)))))	chrX:153686525-153686889(+)$1	1	330	352	13.8534
))))))).)))))).))))).)	chr1:40626956-40627284(+)$1	1	253	275	11.8913
)))).))...)))))..)))))	chr2:85768646-85768907(+)$1	1	198	220	13.0153
))))).))..)))).)))).))	chr20:34252555-34252826(-)$1	1	223	245	12.7834
.)))))).).)).)))))))).	chr16:9185473-9185734(+)$1	1	215	237	11.6778
))))))).)))))....)).))	chr1:1310383-1310624(-)$1	1	89	111	12.9393
))))))..)).)))))).).))	chr2:70056769-70057064(+)$1	1	253	275	11.5635
)))))))....).)))....))	chr10:101379907-101380260(-)$1	1	316	338	11.5898
.)))))..))..)..)))).))	chr2:28974739-28975051(+)$1	1	238	260	11.5210
))))))))..)))))).)))))	chr17:80041204-80041461(-)$1	1	212	234	11.7375
..))))....)))).))))..)	chr19:18548149-18548396(-)$1	1	213	235	10.6247
)))))))...)).))))).)).	chr16:30134333-30134598(-)$1	1	171	193	12.5974
))))))))))))))))))))))	chr2:20550296-20550592(-)$1	1	266	288	10.2513
.))))))..)))...)))).))	chr9:91926080-91926310(+)$1	1	207	229	11.9638
.))))))...)))).)))).))	chr9:15422774-15423066(+)$1	1	250	272	14.5021
.))))))).))))..))))..)	chr17:74733264-74733513(-)$1	1	176	198	13.0419
)))).))).))))).)))))..	chr17:27717263-27717509(+)$1	1	219	241	10.7411
.))))))..)))))).))...)	chr11:65343548-65343817(+)$1	1	242	264	10.4260
).))))))..)))))))))...	chr7:150756615-150756911(+)$1	1	274	296	11.4820
)).))))...))))))))..))	chr21:35287924-35288197(-)$1	1	244	266	11.0949
))))))...)))))...)))).	chrX:152957483-152957736(+)$1	1	219	241	12.8158
)))))))).))))).)))))))	chr5:137688271-137688538(+)$1	1	184	206	11.0936
)))))))....)))))).))).	chr15:89878238-89878465(+)$1	1	197	219	9.4387
)))))))..))..)))))))))	chr11:14520976-14521223(-)$1	1	181	203	10.7589
.))))))))))..).)).).))	chr21:37692563-37692854(+)$1	1	260	282	10.4350
..)))))).))))).)))))))	chr3:122785815-122786174(+)$1	1	279	301	12.1799
)))))))...)))....))).)	chr11:9335978-9336286(-)$1	1	278	300	11.2709
))))))).)))....)))).))	chr2:74405843-74406102(-)$1	1	202	224	11.5687
))))))))).).)).)))))).	chr5:137688338-137688618(+)$1	1	257	279	10.9418
)))))))...))))...))...	chr10:103578019-103578291(-)$1	1	227	249	12.2262
)))).))...)))).))))).)	chr19:572481-572715(+)$1	1	186	208	11.8367
))))))....)))..))))...	chr17:41154589-41154822(+)$1	1	207	229	10.8768
..)))))).))))).)))))))	chr16:88799056-88799287(-)$1	1	81	103	11.6732
.)).).).)).))..)))).))	chr6:34664393-34664666(-)$1	1	228	250	11.5839
)))))))...)).)))))))..	chr2:172379362-172379597(+)$1	1	169	191	12.9438
))))).)))))))..))))..)	chr7:44887469-44887718(-)$1	1	221	243	11.5361
))))).))..)))).)))))))	chr19:40791074-40791368(-)$1	1	167	189	12.8503
))))))))...))..)))).).	chr17:76123312-76123549(-)$1	1	212	234	11.3838
)))))))....))).)..))))	chr7:139044592-139044860(+)$1	1	240	262	10.8861

#PSSM
G : 0.23	H : 0.14	} : 0.10	Y : 0.08	F : 0.08	D : 0.07	E : 0.05	Z : 0.05	A : 0.03	: : 0.03	J : 0.03	f : 0.01	c : 0.01	I : 0.01	
F : 0.28	G : 0.23	H : 0.14	E : 0.07	D : 0.07	: : 0.03	} : 0.03	Y : 0.03	J : 0.03	Z : 0.01	I : 0.01	B : 0.01	
F : 0.37	G : 0.21	H : 0.14	E : 0.10	D : 0.07	J : 0.03	} : 0.01	I : 0.01	B : 0.01	
F : 0.37	G : 0.21	H : 0.14	E : 0.08	D : 0.08	} : 0.03	J : 0.03	I : 0.01	
F : 0.33	G : 0.21	E : 0.08	} : 0.08	H : 0.08	C : 0.05	D : 0.05	J : 0.03	I : 0.01	A : 0.01	
F : 0.33	G : 0.16	} : 0.10	C : 0.08	H : 0.08	B : 0.07	E : 0.05	D : 0.03	J : 0.03	I : 0.01	
F : 0.30	G : 0.14	B : 0.12	C : 0.08	H : 0.08	A : 0.05	E : 0.03	Y : 0.03	~ : 0.03	J : 0.03	D : 0.01	Z : 0.01	I : 0.01	
Z : 0.24	} : 0.21	Y : 0.12	F : 0.10	~ : 0.08	B : 0.05	H : 0.05	C : 0.03	E : 0.01	A : 0.01	D : 0.01	J : 0.01	
Z : 0.26	Y : 0.17	} : 0.12	E : 0.10	A : 0.08	B : 0.08	~ : 0.08	D : 0.01	C : 0.01	F : 0.01	
E : 0.24	Z : 0.24	Y : 0.10	B : 0.10	} : 0.08	~ : 0.08	C : 0.03	D : 0.03	A : 0.01	F : 0.01	
E : 0.30	D : 0.26	C : 0.10	B : 0.08	Y : 0.07	~ : 0.05	F : 0.03	} : 0.03	A : 0.01	Z : 0.01	
E : 0.32	D : 0.24	C : 0.10	B : 0.10	Y : 0.08	F : 0.07	A : 0.01	~ : 0.01	} : 0.01	
E : 0.30	D : 0.24	C : 0.10	F : 0.08	B : 0.07	} : 0.07	Z : 0.03	Y : 0.03	A : 0.01	~ : 0.01	
E : 0.26	D : 0.23	F : 0.12	Y : 0.10	~ : 0.07	C : 0.07	B : 0.05	Z : 0.03	} : 0.01	A : 0.01	
} : 0.33	E : 0.14	Y : 0.12	F : 0.12	Z : 0.08	C : 0.07	~ : 0.07	B : 0.03	
D : 0.26	E : 0.19	F : 0.16	B : 0.08	Y : 0.05	C : 0.05	A : 0.05	~ : 0.05	Z : 0.05	} : 0.01	
D : 0.26	E : 0.17	F : 0.16	B : 0.08	} : 0.07	~ : 0.07	Y : 0.07	Z : 0.05	C : 0.03	
D : 0.30	E : 0.24	F : 0.16	B : 0.08	} : 0.07	C : 0.03	A : 0.03	Y : 0.03	~ : 0.01	
D : 0.30	E : 0.19	F : 0.14	B : 0.08	C : 0.07	} : 0.03	A : 0.03	: : 0.01	I : 0.01	J : 0.01	~ : 0.01	Z : 0.01	Y : 0.01	G : 0.01	
} : 0.26	E : 0.17	F : 0.12	C : 0.07	Y : 0.07	: : 0.05	D : 0.03	J : 0.03	~ : 0.03	B : 0.03	G : 0.03	I : 0.01	A : 0.01	Z : 0.01	
F : 0.16	C : 0.14	E : 0.10	Y : 0.08	G : 0.07	: : 0.07	D : 0.07	} : 0.07	J : 0.05	B : 0.05	A : 0.03	I : 0.01	H : 0.01	Z : 0.01	~ : 0.01	
C : 0.14	F : 0.14	E : 0.10	: : 0.08	} : 0.08	G : 0.07	D : 0.07	J : 0.05	B : 0.05	Y : 0.05	Z : 0.03	= : 0.01	I : 0.01	H : 0.01	~ : 0.01	A : 0.01	

#score	654.502010183457
#seq	56
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF837ZOX_SLTM_transcript_m2_run1.txt

#BEAR
ggggg[cccqqqqqqqqcccgggg	chr17:79965286-79965518(+)$1	232	135	159	16.5426
cdddd[cccqqqqqqqqccc22dd	chr21:47565084-47565351(-)$1	267	180	204	15.5039
a[ccc[cccqqqqqqqqccc]ccc	chr22:45723781-45724047(+)$1	266	34	58	16.6557
:ddddddddqqqqqqqqdddd]dd	chr21:46829580-46829824(+)$1	244	70	94	13.3161
=####ddddqqqqqqqqdddd666	chr7:1130748-1130989(-)$1	241	79	103	14.2089
cccffffffqqqqqqqqffffff3	chr17:78890042-78890291(+)$1	249	134	158	15.1075
::ccc[cccqqqqqqqqcccccc:	chr5:139493777-139494046(+)$1	269	210	234	13.6667
"""ffffffqqqqqqqqffffff2	chr7:1133370-1133636(-)$1	266	213	237	15.0593
FFgggggggqqqqqqqqggggggg	chr8:610207-610431(-)$1	224	189	213	14.6815
c!!bb[cccqqqqqqqqcccbb22	chr7:2672539-2672799(+)$1	260	200	224	15.8320
=========qqqqqqqq=======	chr9:136686814-136687098(-)$1	284	155	179	16.2849
ffffff[bbqqqqqqqqbb]ffff	chr19:949293-949586(+)$1	293	8	32	14.7317
e"""eeeeeqqqqqqqqeeeee]e	chr5:177659166-177659415(-)$1	249	71	95	14.9794
c!!bb[cccqqqqqqqqccc]bb]	chr12:133126692-133126970(+)$1	278	124	148	16.1964
bb####cccqqqqqqqqccc4444	chr16:8952197-8952547(+)$1	350	59	83	16.4534
[eeeee[bbqqqqqqqqbbeeeee	chr11:70899010-70899327(-)$1	317	205	229	14.6569
cc!!a!!bbqqqqqqqqbb22a22	chr1:2214292-2214554(+)$1	262	51	75	15.8053
========aqqqqqqqqa]=====	chr17:79962958-79963193(+)$1	235	121	145	16.4331
========aqqqqqqqqa]=====	chr17:79963065-79963331(+)$1	266	14	38	16.4331
ddd[bbcccqqqqqqqqccc22bb	chr15:69110053-69110334(-)$1	281	112	136	14.9669
ggggggg[aqqqqqqqqa]ggggg	chr17:78890091-78890339(+)$1	248	194	218	15.9019
c!!ffffffqqqqqqqqffffff3	chr6:41516503-41516773(+)$1	270	203	227	15.4590
eeeccc[bbqqqqqqqqbb]ccc]	chr6:41516092-41516341(+)$1	249	72	96	15.3342
eeeee"""aqqqqqqqqa333eee	chr16:88520208-88520494(+)$1	286	24	48	15.3234
eccc[ddddqqqqqqqqdddd]cc	chr7:157627280-157627587(-)$1	307	226	250	15.1902
ddd####bbqqqqqqqqbb4444d	chr19:949082-949359(+)$1	277	91	115	15.4633
dddffffffqqqqqqqqffffff]	chr19:1912527-1912836(+)$1	309	52	76	14.6901
eeea!!cccqqqqqqqqccc22a]	chr8:94748226-94748487(-)$1	261	176	200	16.3235
====eeeeeqqqqqqqqeeeee]=	chr16:591347-591588(+)$1	241	172	196	14.9951
ccc!!ddddqqqqqqqqddddccc	chr2:3472342-3472611(+)$1	269	132	156	15.3748
eeee[ddddqqqqqqqqdddd]ee	chr6:41514189-41514434(+)$1	245	82	106	14.6014
ddddeeeeeqqqqqqqqeeeee22	chr22:31741630-31741912(-)$1	282	32	56	14.1611
cc####cccqqqqqqqqccc22cc	chr17:78891719-78891951(+)$1	232	68	92	16.7028
dd####cccqqqqqqqqcccdddd	chr4:770533-770809(-)$1	276	169	193	15.9719
ffccc[cccqqqqqqqqccc]ccc	chr7:158199599-158199846(-)$1	247	68	92	16.3379
#eeeee[bbqqqqqqqqbb]eeee	chr6:32939758-32939974(+)$1	216	54	78	14.6919
ccccc[cccqqqqqqqqccc]ccc	chr4:1797270-1797511(+)$1	241	188	212	16.6629
:ffffff[aqqqqqqqqa]fffff	chr7:283617-283921(+)$1	304	75	99	14.1098
cc[a[ddddqqqqqqqqdddda]c	chr1:6516730-6516990(+)$1	260	51	75	15.4534
ddd!!bb[aqqqqqqqqa]bbddd	chr19:5080934-5081206(+)$1	272	183	207	14.1629
c$$$$$cccqqqqqqqqccc6666	chr19:451881-452196(-)$1	315	39	63	14.1832
[ccc!!cccqqqqqqqqccc]ccc	chr9:139128129-139128373(-)$1	244	126	150	16.7603
c"""bb[bbqqqqqqqqbb]bb]c	chr14:32546423-32546668(+)$1	245	201	225	15.1144
dd[ffffffqqqqqqqqffffff3	chr19:933119-933371(+)$1	252	120	144	15.1068
gggggggbbqqqqqqqqbb]gggg	chr3:196693423-196693756(-)$1	333	218	242	15.6066
dd!!eeeeeqqqqqqqqeeeee22	chr21:47563001-47563257(-)$1	256	151	175	14.8851
:ccc[ddddqqqqqqqqdddd]cc	chr7:1132503-1132744(-)$1	241	60	84	14.4144
d"""ccc[aqqqqqqqqaccc333	chr15:76552506-76552753(-)$1	247	191	215	16.8868
cc"""ddddqqqqqqqqdddd22c	chr8:144940605-144940874(-)$1	269	200	224	15.4077
hhccc[cccqqqqqqqqccc]ccc	chr4:1227132-1227385(-)$1	253	131	155	16.1896
!ffffff[aqqqqqqqqa]fffff	chr11:70515582-70515835(-)$1	253	20	44	15.0036
gggggg[bbqqqqqqqqbbggggg	chr9:127106688-127106962(+)$1	274	28	52	15.6524
!ccc!!cccqqqqqqqqccc22cc	chr8:144677545-144677773(-)$1	228	31	55	16.5768
ggggg[cccqqqqqqqqccc]ggg	chr7:231416-231679(+)$1	263	145	169	16.6844
:eeeeecccqqqqqqqqccc]eee	chr7:157650464-157650729(-)$1	265	177	201	14.7641
ee!!eeeeeqqqqqqqqeeeee22	chr17:75433595-75433836(+)$1	241	142	166	14.8657
d!!bbddddqqqqqqqqdddd]bb	chr7:1177631-1177906(-)$1	275	107	131	14.4188
fffffbbbbqqqqqqqqbb]bb]f	chr16:9185806-9186090(+)$1	284	206	230	13.8364
d!!ccc[bbqqqqqqqqbb]ccc]	chr14:19890132-19890386(-)$1	254	7	31	15.8881
b[gggggggqqqqqqqqggggggg	chr16:74352906-74353191(-)$1	285	89	113	15.4665
[a[bb"""aqqqqqqqqa333bba	chr19:1410299-1410621(+)$1	322	183	207	15.3076

#otherMatches

#Seq PSSM
ACGUGGCCGCCUGAGCACGGCAUG	chr17:79965286-79965518(+)$1	232	135	159	16.5426
AGCACCGCCCUCACCCCGGCAAGU	chr21:47565084-47565351(-)$1	267	180	204	15.5039
CAGUCGAUCCUCAGCCUGAUGGAC	chr22:45723781-45724047(+)$1	266	34	58	16.6557
UUCCCCUCCUUAACCCCGGGGCGG	chr21:46829580-46829824(+)$1	244	70	94	13.3161
UUAUGAGCUCGGGAGGUGGCUGUG	chr7:1130748-1130989(-)$1	241	79	103	14.2089
agcaggcacccaugccagugccua	chr17:78890042-78890291(+)$1	249	134	158	15.1075
CCUGGACGUGAAGCAGAACGCCAA	chr5:139493777-139494046(+)$1	269	210	234	13.6667
CAAAGGCUGAACGUCACCAGCCUC	chr7:1133370-1133636(-)$1	266	213	237	15.0593
GUGUGUGUGAACAUGAGCACAUGC	chr8:610207-610431(-)$1	224	189	213	14.6815
CAAGCUACUGUCAUUUGAGUGCGG	chr7:2672539-2672799(+)$1	260	200	224	15.8320
GGAGGCCCAUUCACGUCUGGGCUU	chr9:136686814-136687098(-)$1	284	155	179	16.2849
CACCUGGGGAGCAGCAGCCGCAGG	chr19:949293-949586(+)$1	293	8	32	14.7317
UGGAGCUUCUAGGGCCCGAGGCGG	chr5:177659166-177659415(-)$1	249	71	95	14.9794
CAGGGGAGCGGAGAGGGGCUGCCA	chr12:133126692-133126970(+)$1	278	124	148	16.1964
GCCAUGGCCCUUGGACCGGCAGAA	chr16:8952197-8952547(+)$1	350	59	83	16.4534
uguggggucugaccuuugacccgc	chr11:70899010-70899327(-)$1	317	205	229	14.6569
UGCCCUAAGCUGAGCCACUGUGUA	chr1:2214292-2214554(+)$1	262	51	75	15.8053
GGGCAGAGCAGAACACGGCCUCUG	chr17:79962958-79963193(+)$1	235	121	145	16.4331
GGGCAGAGCAGAACACGGCCUCUG	chr17:79963065-79963331(+)$1	266	14	38	16.4331
GGGGGAGCGGAGUCUUGCGCCAUC	chr15:69110053-69110334(-)$1	281	112	136	14.9669
gcgccuggcuugccuuuggcaggu	chr17:78890091-78890339(+)$1	248	194	218	15.9019
UGAAACUCAAAAAACUGUGAGUUG	chr6:41516503-41516773(+)$1	270	203	227	15.4590
CCCAGCACGCACUGUUUCGGGUUC	chr6:41516092-41516341(+)$1	249	72	96	15.3342
GCCGUAAUCUAAUCUCCGCCGGCG	chr16:88520208-88520494(+)$1	286	24	48	15.3234
CACACAAGCACACCCACGUUUCUG	chr7:157627280-157627587(-)$1	307	226	250	15.1902
CCCAAAUGCAGAGCAGGGCCCCAG	chr19:949082-949359(+)$1	277	91	115	15.4633
GCGGCUCUUCUCCACGCAGGAGCG	chr19:1912527-1912836(+)$1	309	52	76	14.6901
AUUGAGUCUGUUAAGGAAGAAGCA	chr8:94748226-94748487(-)$1	261	176	200	16.3235
CACCGGAGCGCCUCCCAGUUCCUG	chr16:591347-591588(+)$1	241	172	196	14.9951
CUCCAGUGCACACGUGGGCACGAG	chr2:3472342-3472611(+)$1	269	132	156	15.3748
ccgggccggaaccagggcugggcc	chr6:41514189-41514434(+)$1	245	82	106	14.6014
CCCCCCCGGAAGGUAGACCGGGAA	chr22:31741630-31741912(-)$1	282	32	56	14.1611
CCUGCACCUCCACCACAAGGAUGG	chr17:78891719-78891951(+)$1	232	68	92	16.7028
gagauuuggggguggagccauucu	chr4:770533-770809(-)$1	276	169	193	15.9719
CCGACCUCCUCACAGGCGGAUGUU	chr7:158199599-158199846(-)$1	247	68	92	16.3379
GCGGAGAGGUGUUCCUUCCCCUUC	chr6:32939758-32939974(+)$1	216	54	78	14.6919
UGACCCCCCAGGGUGCAGGGAGGU	chr4:1797270-1797511(+)$1	241	188	212	16.6629
ACCCGGGAGACCUGUGCCACCCGG	chr7:283617-283921(+)$1	304	75	99	14.1098
AUUGUAGUGCCCGUAUCCACUCUA	chr1:6516730-6516990(+)$1	260	51	75	15.4534
guuacGCCCAGAACUCCGAGCAGC	chr19:5080934-5081206(+)$1	272	183	207	14.1629
ccccaaccgcagugaaacggagaa	chr19:451881-452196(-)$1	315	39	63	14.1832
GAGGGCGUCCUGUUUCAGAUACCU	chr9:139128129-139128373(-)$1	244	126	150	16.7603
GAGACCGACGUUGUUAGGUAGGAC	chr14:32546423-32546668(+)$1	245	201	225	15.1144
AGACGCAGGAGCCAGGGCCUGUGA	chr19:933119-933371(+)$1	252	120	144	15.1068
GCGGGGGUCGUUCCCUGGAGCUCC	chr3:196693423-196693756(-)$1	333	218	242	15.6066
CUACCUUACAAGGCUGGGUGAGAA	chr21:47563001-47563257(-)$1	256	151	175	14.8851
AAGGUGACCAGUCGUGAGGUUUCC	chr7:1132503-1132744(-)$1	241	60	84	14.4144
GAAAGCUUGGGCAUCAACAGCGAA	chr15:76552506-76552753(-)$1	247	191	215	16.8868
UGGAAGGGCGUGCUGCGGCCCGGC	chr8:144940605-144940874(-)$1	269	200	224	15.4077
GGAGGGCACAGGACGCAGUGGCCU	chr4:1227132-1227385(-)$1	253	131	155	16.1896
ucaacagagauuaaccgcacuguu	chr11:70515582-70515835(-)$1	253	20	44	15.0036
CCCCGCACCUGGCCCUCGGGUGGG	chr9:127106688-127106962(+)$1	274	28	52	15.6524
GUCAGACAGGAAAGUGGCUGAGUG	chr8:144677545-144677773(-)$1	228	31	55	16.5768
GUCAUCCAGCAGCUGCACUGUGUG	chr7:231416-231679(+)$1	263	145	169	16.6844
AUUCCACCCCCAACCUCGGGAUGG	chr7:157650464-157650729(-)$1	265	177	201	14.7641
CCUGCCCAGUCAUCCUUCUGGGGU	chr17:75433595-75433836(+)$1	241	142	166	14.8657
UGGCCGGCGGGUCAGGGCGCCAGG	chr7:1177631-1177906(-)$1	275	107	131	14.4188
CUGCCCCCCGAGCUGCAGGAGGAG	chr16:9185806-9186090(+)$1	284	206	230	13.8364
UGGAGAACACACGUUUUUGGUCUA	chr14:19890132-19890386(-)$1	254	7	31	15.8881
ggguccccuggagcuggaggggau	chr16:74352906-74353191(-)$1	285	89	113	15.4665
AGAGCACGCGCGAUCAGGAAGGCC	chr19:1410299-1410621(+)$1	322	183	207	15.3076

#DB
(((((.(((........)))))))	chr17:79965286-79965518(+)$1	1	135	159	16.5426
(((((.(((........)))..))	chr21:47565084-47565351(-)$1	1	180	204	15.5039
(.(((.(((........))).)))	chr22:45723781-45724047(+)$1	1	34	58	16.6557
.((((((((........)))).))	chr21:46829580-46829824(+)$1	1	70	94	13.3161
(....((((........))))...	chr7:1130748-1130989(-)$1	1	79	103	14.2089
(((((((((........)))))).	chr17:78890042-78890291(+)$1	1	134	158	15.1075
..(((.(((........)))))).	chr5:139493777-139494046(+)$1	1	210	234	13.6667
...((((((........)))))).	chr7:1133370-1133636(-)$1	1	213	237	15.0593
))(((((((........)))))))	chr8:610207-610431(-)$1	1	189	213	14.6815
(..((.(((........)))))..	chr7:2672539-2672799(+)$1	1	200	224	15.8320
(((((((((........)))))))	chr9:136686814-136687098(-)$1	1	155	179	16.2849
((((((.((........)).))))	chr19:949293-949586(+)$1	1	8	32	14.7317
(...(((((........))))).)	chr5:177659166-177659415(-)$1	1	71	95	14.9794
(..((.(((........))).)).	chr12:133126692-133126970(+)$1	1	124	148	16.1964
((....(((........)))....	chr16:8952197-8952547(+)$1	1	59	83	16.4534
.(((((.((........)))))))	chr11:70899010-70899327(-)$1	1	205	229	14.6569
((..(..((........))..)..	chr1:2214292-2214554(+)$1	1	51	75	15.8053
(((((((((........).)))))	chr17:79962958-79963193(+)$1	1	121	145	16.4331
(((((((((........).)))))	chr17:79963065-79963331(+)$1	1	14	38	16.4331
(((.(((((........)))..))	chr15:69110053-69110334(-)$1	1	112	136	14.9669
(((((((.(........).)))))	chr17:78890091-78890339(+)$1	1	194	218	15.9019
(..((((((........)))))).	chr6:41516503-41516773(+)$1	1	203	227	15.4590
((((((.((........)).))).	chr6:41516092-41516341(+)$1	1	72	96	15.3342
(((((...(........)...)))	chr16:88520208-88520494(+)$1	1	24	48	15.3234
)(((.((((........)))).))	chr7:157627280-157627587(-)$1	1	226	250	15.1902
(((....((........))....)	chr19:949082-949359(+)$1	1	91	115	15.4633
(((((((((........)))))).	chr19:1912527-1912836(+)$1	1	52	76	14.6901
((((..(((........)))..).	chr8:94748226-94748487(-)$1	1	176	200	16.3235
(((((((((........))))).)	chr16:591347-591588(+)$1	1	172	196	14.9951
(((..((((........)))))))	chr2:3472342-3472611(+)$1	1	132	156	15.3748
((((.((((........)))).))	chr6:41514189-41514434(+)$1	1	82	106	14.6014
(((((((((........)))))..	chr22:31741630-31741912(-)$1	1	32	56	14.1611
((....(((........)))..))	chr17:78891719-78891951(+)$1	1	68	92	16.7028
((....(((........)))))))	chr4:770533-770809(-)$1	1	169	193	15.9719
))(((.(((........))).)))	chr7:158199599-158199846(-)$1	1	68	92	16.3379
.(((((.((........)).))))	chr6:32939758-32939974(+)$1	1	54	78	14.6919
(((((.(((........))).)))	chr4:1797270-1797511(+)$1	1	188	212	16.6629
.((((((.(........).)))))	chr7:283617-283921(+)$1	1	75	99	14.1098
((.(.((((........))))).)	chr1:6516730-6516990(+)$1	1	51	75	15.4534
(((..((.(........).)))))	chr19:5080934-5081206(+)$1	1	183	207	14.1629
(.....(((........)))....	chr19:451881-452196(-)$1	1	39	63	14.1832
.(((..(((........))).)))	chr9:139128129-139128373(-)$1	1	126	150	16.7603
(...((.((........)).)).)	chr14:32546423-32546668(+)$1	1	201	225	15.1144
((.((((((........)))))).	chr19:933119-933371(+)$1	1	120	144	15.1068
(((((((((........)).))))	chr3:196693423-196693756(-)$1	1	218	242	15.6066
((..(((((........)))))..	chr21:47563001-47563257(-)$1	1	151	175	14.8851
.(((.((((........)))).))	chr7:1132503-1132744(-)$1	1	60	84	14.4144
(...(((.(........))))...	chr15:76552506-76552753(-)$1	1	191	215	16.8868
((...((((........))))..)	chr8:144940605-144940874(-)$1	1	200	224	15.4077
))(((.(((........))).)))	chr4:1227132-1227385(-)$1	1	131	155	16.1896
.((((((.(........).)))))	chr11:70515582-70515835(-)$1	1	20	44	15.0036
((((((.((........)))))))	chr9:127106688-127106962(+)$1	1	28	52	15.6524
.(((..(((........)))..))	chr8:144677545-144677773(-)$1	1	31	55	16.5768
(((((.(((........))).)))	chr7:231416-231679(+)$1	1	145	169	16.6844
.((((((((........))).)))	chr7:157650464-157650729(-)$1	1	177	201	14.7641
((..(((((........)))))..	chr17:75433595-75433836(+)$1	1	142	166	14.8657
(..((((((........)))).))	chr7:1177631-1177906(-)$1	1	107	131	14.4188
(((((((((........)).)).)	chr16:9185806-9186090(+)$1	1	206	230	13.8364
(..(((.((........)).))).	chr14:19890132-19890386(-)$1	1	7	31	15.8881
(.(((((((........)))))))	chr16:74352906-74353191(-)$1	1	89	113	15.4665
.(.((...(........)...)))	chr19:1410299-1410621(+)$1	1	183	207	15.3076

#PSSM
c : 0.21	d : 0.18	e : 0.11	g : 0.08	: : 0.08	= : 0.08	f : 0.04	[ : 0.04	b : 0.03	! : 0.03	a : 0.01	" : 0.01	F : 0.01	# : 0.01	h : 0.01	
c : 0.18	d : 0.16	e : 0.13	g : 0.08	! : 0.08	f : 0.08	" : 0.06	= : 0.06	[ : 0.03	# : 0.01	: : 0.01	F : 0.01	b : 0.01	$ : 0.01	h : 0.01	a : 0.01	
c : 0.18	! : 0.13	g : 0.11	d : 0.11	e : 0.11	" : 0.08	# : 0.06	= : 0.06	f : 0.06	[ : 0.04	$ : 0.01	
c : 0.18	f : 0.14	g : 0.11	# : 0.08	e : 0.08	! : 0.08	b : 0.06	= : 0.06	" : 0.06	d : 0.04	a : 0.03	[ : 0.01	$ : 0.01	
f : 0.14	e : 0.14	c : 0.13	g : 0.11	b : 0.09	# : 0.08	! : 0.08	[ : 0.06	= : 0.04	d : 0.03	a : 0.01	$ : 0.01	" : 0.01	
[ : 0.16	d : 0.14	f : 0.13	e : 0.13	g : 0.08	# : 0.06	! : 0.06	b : 0.06	= : 0.04	c : 0.04	" : 0.03	$ : 0.01	
c : 0.32	d : 0.14	f : 0.11	[ : 0.11	e : 0.08	g : 0.06	= : 0.04	" : 0.03	b : 0.03	! : 0.01	# : 0.01	
c : 0.31	b : 0.18	d : 0.14	f : 0.08	e : 0.08	[ : 0.08	= : 0.04	g : 0.03	" : 0.03	
c : 0.31	b : 0.18	d : 0.14	a : 0.14	f : 0.08	e : 0.08	g : 0.03	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.31	b : 0.18	d : 0.14	a : 0.14	f : 0.08	e : 0.08	g : 0.03	= : 0.01	
c : 0.32	b : 0.18	d : 0.14	] : 0.09	f : 0.08	e : 0.08	g : 0.03	3 : 0.03	= : 0.01	
c : 0.32	d : 0.14	f : 0.11	] : 0.11	e : 0.09	g : 0.06	= : 0.04	3 : 0.03	2 : 0.01	4 : 0.01	b : 0.01	
d : 0.16	] : 0.13	f : 0.13	e : 0.11	g : 0.09	2 : 0.09	c : 0.06	b : 0.06	= : 0.04	4 : 0.03	3 : 0.03	6 : 0.01	
c : 0.14	e : 0.14	f : 0.13	g : 0.11	2 : 0.09	] : 0.08	b : 0.08	= : 0.04	6 : 0.03	4 : 0.03	a : 0.03	d : 0.03	3 : 0.01	
c : 0.21	f : 0.13	g : 0.11	2 : 0.09	] : 0.08	e : 0.08	d : 0.06	b : 0.06	= : 0.04	6 : 0.03	4 : 0.03	a : 0.01	3 : 0.01	
c : 0.21	g : 0.11	2 : 0.09	e : 0.09	d : 0.08	] : 0.08	3 : 0.06	= : 0.06	f : 0.06	6 : 0.03	b : 0.03	: : 0.01	4 : 0.01	a : 0.01	

#score	937.448927808033
#seq	61
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_CDS_m3_run2.txt

#BEAR
a!!bb[bb[bb[ddddoooooodddd22bbbb22bb3	chr17:7788077-7788380(+)$1	303	178	215	14.6586
"""eeeee"""bb!!cccnnnnnccc22bb22eeeee	chr2:232325463-232325677(-)$1	214	87	124	12.6142
===========[cccqqqqqqqqccc]==========	chr1:70716026-70716282(+)$1	256	152	189	13.4751
dddd"""ccc[bbddddoooooodddd]bb4444ccc	chr2:153528916-153529238(-)$1	322	225	262	13.3382
[eeeee[a"""a[cccnnnnnccc]a333a]eeeee]	chr1:52305876-52306147(-)$1	271	142	179	14.7397
dddiiiiiiiii!!cccnnnnnccc333iiiiiiiii	chr5:145850113-145850406(+)$1	293	68	105	14.8672
+===========!!bboooooobb]===========5	chr1:165728658-165728916(-)$1	258	65	102	14.5891
###dddd[bb!!ddddoooooodddd22bbdddd333	chr10:70525540-70525759(+)$1	219	140	177	15.7430
c:bb[===========oooooo===========]bb:	chr9:131456819-131457021(+)$1	202	83	120	13.4802
dddd!!dddd!!bboooooobbdddd22dddd]bb]g	chr2:232326624-232326828(-)$1	204	13	50	11.8224
###bb!!gggggggooooooggggggg22bb333ccc	chr9:100777550-100777778(+)$1	228	71	108	12.3759
===!!bb$$$$$ddddoooooodddd333bb22====	chr13:31035379-31035665(-)$1	286	154	191	16.9585
iii[cccbb"""cccqqqqqqqqccc22bb]ccc]ii	chr6:16146869-16147128(+)$1	259	148	185	12.1555
ccccc!!ccc!!ddddnnnnnddddccc]ccc22ccc	chr17:49133706-49133945(-)$1	239	3	40	12.9051
e$$$$$dddd!!ddddoooooodddd]ddddeeeee]	chr2:232326567-232326824(-)$1	257	82	119	13.6879
a[dddd####cccrrrrrrrrrcccdddd]a333ddd	chr20:39721057-39721314(+)$1	257	86	123	10.6866
ccc[ggggggg[ddddmmmmddddggggggg]ccccc	chr15:69072327-69072582(-)$1	255	80	117	10.9545
ccc[eeeee"""cccqqqqqqqqccc22eeeee]ccc	chr2:170664929-170665163(+)$1	234	173	210	12.4485
d[a!!eeeee"""ddddmmmmdddd22eeeee22a]d	chr5:68660572-68660894(-)$1	322	202	239	11.9461
cc[ggggggg!!ddddmmmmddddggggggg333ccc	chr17:34942442-34942724(+)$1	282	220	257	12.3738
edddd[dddd!!ddddoooooodddd22dddddddd:	chr3:186507603-186507937(-)$1	334	162	199	14.0312
ccc!!eeeee!!ccc"""bblllbb4444ccc22eee	chr2:99980189-99980426(+)$1	237	7	44	10.6412
ff[eeeee[bb[bb[aooooooa]bb]bb]eeeee]f	chr10:70545839-70546076(+)$1	237	7	44	11.9219
b[ggggggg$$$$$cccooooooccc22gggggggbb	chr3:9488631-9488868(+)$1	237	135	172	15.2732
cc!!dddd[eeeeecccooooooccc22eeeee]ddd	chr7:117831866-117832217(+)$1	351	303	340	13.9022
!!bb"""ccc!!ddddoooooodddd22ccc333bb2	chr3:112260549-112260832(-)$1	283	67	104	17.1056
hhhhhh[ccc!!ddddoooooodddd22ccc333hhh	chr2:170465109-170465363(+)$1	254	72	109	16.2886
[eeeee[a"""a[cccnnnnnccc]a333a]eeeee]	chr1:52305801-52306076(-)$1	275	71	108	14.7397
""ccc!!eeeee[ddddnnnnndddd]eeeee22ccc	chr15:44106651-44106987(-)$1	336	210	247	11.9561
ddd[bb[dddd[cccooooooccc]dddd]bb]dddd	chr2:99980633-99980866(+)$1	233	60	97	11.0308
iiiiiiiii!!ddddpppppppdddd22iiiiiiiii	chr6:7310054-7310307(-)$1	253	164	201	12.6634
feeeee[eeeee"""cccmmmmccc333eeeee]eee	chr14:73572803-73573092(+)$1	289	11	48	10.9997
:ggggggg####ddddnnnnndddd4444ggggggg:	chr21:34136670-34136931(-)$1	261	202	239	12.8341
heeeee[ggggggg!!bboooooobb22ggggggg]e	chr20:13756481-13756854(-)$1	373	235	272	12.2252
=========####cccooooooccc333=========	chr9:131456088-131456311(+)$1	223	75	112	19.9478
======$$$$$eeeeeooooooeeeee==========	chr11:77336691-77336964(-)$1	273	8	45	14.8970
[eeeee[a"""a[cccnnnnnccc]a333a]eeeee]	chr1:52305947-52306221(-)$1	274	216	253	14.7397
ggggggg"""ffffffooooooffffff]gggggggd	chr15:59186021-59186301(-)$1	280	20	57	12.5680
cc:ggggggg"""cccooooooccc4444ggggggg:	chr10:70532661-70532958(+)$1	297	178	215	15.2381
ff!!eeeee!!ccc!!cccmmmmccc22ccc22eeee	chr2:232325096-232325372(-)$1	276	232	269	11.3670
=========####cccooooooccc333=========	chr9:131456077-131456288(+)$1	211	86	123	19.9478
=======dddd[ddddoooooodddd22dddd4444=	chr6:7303677-7303974(-)$1	297	219	256	16.5472
==========[ccc[aooooooaccc===========	chr15:44107043-44107297(-)$1	254	13	50	17.5258
c!!dddd[bb!!ddddoooooodddd22bbdddd444	chr10:70525559-70525860(+)$1	301	121	158	15.7509
"""eeeee"""bb!!cccnnnnnccc22bb22eeeee	chr2:232325425-232325663(-)$1	238	73	110	12.6142
=========####cccooooooccc333=========	chr9:131456113-131456340(+)$1	227	50	87	19.9478
=======!!gggggggooooooggggggg========	chr1:197053267-197053590(-)$1	323	24	61	15.8663
!bb[bb[iiiiiiiiiooooooiiiiiiiii]bb]bb	chr3:112256890-112257128(-)$1	238	72	109	12.9144
ddd:iiiiiiiii[ddddllldddd333iiiiiiiii	chr5:131953661-131953994(+)$1	333	296	333	12.8990

#otherMatches

#Seq PSSM
ggaggaCGACGACGAGGGAGUACUCGGGCGCGGGCCG	chr17:7788077-7788380(+)$1	303	178	215	14.6586
ACUUCUCUUUCAGACUCUGAAGAAGAAGCUAUGGAGA	chr2:232325463-232325677(-)$1	214	87	124	12.6142
AUGUAAAAGUAUGUUUACAAAUUGAUUUAUUUUUAUA	chr1:70716026-70716282(+)$1	256	152	189	13.4751
CUUGAAAAUCAUGAGAAAAUGACUUCUACAACCAGAU	chr2:153528916-153529238(-)$1	322	225	262	13.3382
gaagaugaguuugaugaugaacaugaugaugaucuug	chr1:52305876-52306147(-)$1	271	142	179	14.7397
CUUAAUUUUUUUCAUAGAAAAGUUAGAAGAGAAGAUU	chr5:145850113-145850406(+)$1	293	68	105	14.8672
AUUUUUACUGUGUUACUAUGUUGUUUACAGUGGAAAA	chr1:165728658-165728916(-)$1	258	65	102	14.5891
CAGCGUCGAGAAAGAAGAUAUAUUUUGCCUGAUGAAC	chr10:70525540-70525759(+)$1	219	140	177	15.7430
CCCACUUUUUCUUUCAGGAGGAUGAAGGAGAAGAUGA	chr9:131456819-131457021(+)$1	202	83	120	13.4802
GCCAGAGUCUAACAUCUCAUUGGGACCAUGGUUAUCU	chr2:232326624-232326828(-)$1	204	13	50	11.8224
AAGUCAAUUUUUGUUACUGUACagaggaggaagaagg	chr9:100777550-100777778(+)$1	228	71	108	12.3759
gaugaUGAUGAUGAAUAAGUUGGUUCUAGCGCAGUUU	chr13:31035379-31035665(-)$1	286	154	191	16.9585
UGAACUGCACUAUUAUAAACUAUUAAAAUGAUAGAUU	chr6:16146869-16147128(+)$1	259	148	185	12.1555
UUGCUAAGGAUUAUGGAUAGCCCAUUCUGAGUCUAAC	chr17:49133706-49133945(-)$1	239	3	40	12.9051
CAUUUAUUCUCAAGGUCGUCAUACCUCAGAAGAAAGG	chr2:232326567-232326824(-)$1	257	82	119	13.6879
AGUGGAAAUUCCUAGAACAUAAAGGUCCAGUAUUUGC	chr20:39721057-39721314(+)$1	257	86	123	10.6866
GCCGCUUUCUUACUUUUCCAGAAGAAGAAAGGGGUCA	chr15:69072327-69072582(-)$1	255	80	117	10.9545
UUAAAGCUCUGACAGAAAUAUAGCUGGUGAGCUCUGA	chr2:170664929-170665163(+)$1	234	173	210	12.4485
UUCAAGUUGUGUUUUAGAAAACUAAUAAUAAUGAGUA	chr5:68660572-68660894(-)$1	322	202	239	11.9461
CUGUUGAGGACAGAACACGUGUUUUCCUUGGAGUGGC	chr17:34942442-34942724(+)$1	282	220	257	12.3738
UUAUCUCAGAAUUGUUAACGUGAAUAUAUCUGGAUGG	chr3:186507603-186507937(-)$1	334	162	199	14.0312
AGCAAAGCCACUGUUAAAGCUAUGCAAGAAGCUCUGG	chr2:99980189-99980426(+)$1	237	7	44	10.6412
UAUGUGUAUUAAUGACUUUUUUGCCACUGUUAUAUUU	chr10:70545839-70546076(+)$1	237	7	44	11.9219
CAUGCUUUUGAAAACUUAGAGAAAAGAAAGAAGCGGC	chr3:9488631-9488868(+)$1	237	135	172	15.2732
CAUUGUAAUAUGUAAAUUAAAAUAUUUCUACAUUUUA	chr7:117831866-117832217(+)$1	351	303	340	13.9022
ACUUAAGUGAUUUUAAAUAUAAUUAAUUUCAAAGGAC	chr3:112260549-112260832(-)$1	283	67	104	17.1056
CGAGAGUUUCGCUGUUAAACACAACAAAGAAUUUCUC	chr2:170465109-170465363(+)$1	254	72	109	16.2886
gaagaugaguuugaugaugaacaugaugaugaucuug	chr1:52305801-52306076(-)$1	275	71	108	14.7397
AAUCAGAGUCUGAGUAUGAAGAGUACACAGACAGUGA	chr15:44106651-44106987(-)$1	336	210	247	11.9561
AAAUGAAUACAGGUUUUGUCUGACAUGUACUCUUUUA	chr2:99980633-99980866(+)$1	233	60	97	11.0308
GUUACAUACUAUUUAAUAUAUGUAAAAUGUAUGUAAU	chr6:7310054-7310307(-)$1	253	164	201	12.6634
UUAAAUCUUGGUAUCCCUUAAUAGGUUAAUCAAUAUU	chr14:73572803-73573092(+)$1	289	11	48	10.9997
AGAGGAAGAAAAGCCAAAGACUGGUGGAGCUUUUUCA	chr21:34136670-34136931(-)$1	261	202	239	12.8341
GUUCUGAAGAUGAAGAUGAUACGGCAGAUUUGUUUCC	chr20:13756481-13756854(-)$1	373	235	272	12.2252
UUUUUUUUAAGGUUCCCGAUAUGGAUGAUgaagaagg	chr9:131456088-131456311(+)$1	223	75	112	19.9478
GAAAUUAAAAUUGAAUUGCAAUAUUCAGAUUUUCAAU	chr11:77336691-77336964(-)$1	273	8	45	14.8970
gaagaugaguuugaugaugaacaugaugaugaucuug	chr1:52305947-52306221(-)$1	274	216	253	14.7397
uuuauuuuuauuuauuuauuuuGAUAAGCAGAUAGAC	chr15:59186021-59186301(-)$1	280	20	57	12.5680
UGAGGAUGAAGAAGAUGGUAUGAUUGAAAUUUAUUUA	chr10:70532661-70532958(+)$1	297	178	215	15.2381
UGAAUAACAAAGGGACUUAAUACUGAAACCUGAUGUU	chr2:232325096-232325372(-)$1	276	232	269	11.3670
UUUUUUUUAAGGUUCCCGAUAUGGAUGAUgaagaagg	chr9:131456077-131456288(+)$1	211	86	123	19.9478
AGAUGUAGGCAUUUUAAAACGAUGAGCUUGUUCAUAU	chr6:7303677-7303974(-)$1	297	219	256	16.5472
ACUGUUUUUCAGAUUGGCUCGACAUCGAAAAAUAGUG	chr15:44107043-44107297(-)$1	254	13	50	17.5258
CAGCGUCGAGAAAGAAGAUAUAUUUUGCCUGAUGAAC	chr10:70525559-70525860(+)$1	301	121	158	15.7509
ACUUCUCUUUCAGACUCUGAAGAAGAAGCUAUGGAGA	chr2:232325425-232325663(-)$1	238	73	110	12.6142
UUUUUUUUAAGGUUCCCGAUAUGGAUGAUgaagaagg	chr9:131456113-131456340(+)$1	227	50	87	19.9478
UUUUUAACAGACUUAAGCCAGAUUGGGUUUUGAGAAG	chr1:197053267-197053590(-)$1	323	24	61	15.8663
AUUAAUCUUUUGUUGUUUUUUUAUAACAGAAUAUGAA	chr3:112256890-112257128(-)$1	238	72	109	12.9144
CUGGAUAUUUAUUAUAAGACUCUUGACCAGUAAGUAU	chr5:131953661-131953994(+)$1	333	296	333	12.8990

#DB
(..((.((.((.((((......))))..))))..)).	chr17:7788077-7788380(+)$1	1	178	215	14.6586
...(((((...((..(((.....)))..))..)))))	chr2:232325463-232325677(-)$1	1	87	124	12.6142
(((((((((((.(((........))).))))))))))	chr1:70716026-70716282(+)$1	1	152	189	13.4751
((((...(((.((((((......)))).))....)))	chr2:153528916-153529238(-)$1	1	225	262	13.3382
.(((((.(...(.(((.....))).)...).))))).	chr1:52305876-52306147(-)$1	1	142	179	14.7397
((((((((((((..(((.....)))...)))))))))	chr5:145850113-145850406(+)$1	1	68	105	14.8672
.(((((((((((..((......)).))))))))))).	chr1:165728658-165728916(-)$1	1	65	102	14.5891
...((((.((..((((......))))..))))))...	chr10:70525540-70525759(+)$1	1	140	177	15.7430
).((.(((((((((((......))))))))))).)).	chr9:131456819-131457021(+)$1	1	83	120	13.4802
((((..((((..((......))))))..)))).)).)	chr2:232326624-232326828(-)$1	1	13	50	11.8224
...((..(((((((......)))))))..))...)))	chr9:100777550-100777778(+)$1	1	71	108	12.3759
(((..((.....((((......))))...))..))))	chr13:31035379-31035665(-)$1	1	154	191	16.9585
(((.(((((...(((........)))..)).))).))	chr6:16146869-16147128(+)$1	1	148	185	12.1555
(((((..(((..((((.....))))))).)))..)))	chr17:49133706-49133945(-)$1	1	3	40	12.9051
(.....((((..((((......)))).))))))))).	chr2:232326567-232326824(-)$1	1	82	119	13.6879
(.((((....(((.........))))))).)...)))	chr20:39721057-39721314(+)$1	1	86	123	10.6866
(((.(((((((.((((....))))))))))).)))((	chr15:69072327-69072582(-)$1	1	80	117	10.9545
(((.(((((...(((........)))..))))).)))	chr2:170664929-170665163(+)$1	1	173	210	12.4485
(.(..(((((...((((....))))..)))))..).)	chr5:68660572-68660894(-)$1	1	202	239	11.9461
((.(((((((..((((....)))))))))))...)))	chr17:34942442-34942724(+)$1	1	220	257	12.3738
)((((.((((..((((......))))..)))))))).	chr3:186507603-186507937(-)$1	1	162	199	14.0312
(((..(((((..(((...((...))....)))..)))	chr2:99980189-99980426(+)$1	1	7	44	10.6412
((.(((((.((.((.(......).)).)).))))).)	chr10:70545839-70546076(+)$1	1	7	44	11.9219
(.(((((((.....(((......)))..)))))))))	chr3:9488631-9488868(+)$1	1	135	172	15.2732
((..((((.((((((((......)))..))))).)))	chr7:117831866-117832217(+)$1	1	303	340	13.9022
..((...(((..((((......))))..)))...)).	chr3:112260549-112260832(-)$1	1	67	104	17.1056
((((((.(((..((((......))))..)))...)))	chr2:170465109-170465363(+)$1	1	72	109	16.2886
.(((((.(...(.(((.....))).)...).))))).	chr1:52305801-52306076(-)$1	1	71	108	14.7397
..(((..(((((.((((.....)))).)))))..)))	chr15:44106651-44106987(-)$1	1	210	247	11.9561
(((.((.((((.(((......))).)))).)).))))	chr2:99980633-99980866(+)$1	1	60	97	11.0308
(((((((((..((((.......))))..)))))))))	chr6:7310054-7310307(-)$1	1	164	201	12.6634
((((((.(((((...(((....)))...))))).)))	chr14:73572803-73573092(+)$1	1	11	48	10.9997
.(((((((....((((.....))))....))))))).	chr21:34136670-34136931(-)$1	1	202	239	12.8341
((((((.(((((((..((......))..))))))).)	chr20:13756481-13756854(-)$1	1	235	272	12.2252
(((((((((....(((......)))...)))))))))	chr9:131456088-131456311(+)$1	1	75	112	19.9478
((((((.....(((((......)))))))))))))))	chr11:77336691-77336964(-)$1	1	8	45	14.8970
.(((((.(...(.(((.....))).)...).))))).	chr1:52305947-52306221(-)$1	1	216	253	14.7397
(((((((...((((((......)))))).))))))))	chr15:59186021-59186301(-)$1	1	20	57	12.5680
)).(((((((...(((......)))....))))))).	chr10:70532661-70532958(+)$1	1	178	215	15.2381
((..(((((..(((..(((....)))..)))..))))	chr2:232325096-232325372(-)$1	1	232	269	11.3670
(((((((((....(((......)))...)))))))))	chr9:131456077-131456288(+)$1	1	86	123	19.9478
(((((((((((.((((......))))..))))....)	chr6:7303677-7303974(-)$1	1	219	256	16.5472
((((((((((.(((.(......)))))))))))))))	chr15:44107043-44107297(-)$1	1	13	50	17.5258
(..((((.((..((((......))))..))))))...	chr10:70525559-70525860(+)$1	1	121	158	15.7509
...(((((...((..(((.....)))..))..)))))	chr2:232325425-232325663(-)$1	1	73	110	12.6142
(((((((((....(((......)))...)))))))))	chr9:131456113-131456340(+)$1	1	50	87	19.9478
(((((((..(((((((......)))))))))))))))	chr1:197053267-197053590(-)$1	1	24	61	15.8663
.((.((.(((((((((......))))))))).)).))	chr3:112256890-112257128(-)$1	1	72	109	12.9144
))).(((((((((.((((...))))...)))))))))	chr5:131953661-131953994(+)$1	1	296	333	12.8990

#PSSM
= : 0.18	c : 0.18	d : 0.12	" : 0.06	[ : 0.06	f : 0.06	a : 0.04	# : 0.04	i : 0.04	e : 0.04	! : 0.04	h : 0.04	+ : 0.02	b : 0.02	: : 0.02	g : 0.02	
= : 0.20	c : 0.14	d : 0.12	e : 0.10	! : 0.06	" : 0.06	[ : 0.06	# : 0.04	i : 0.04	f : 0.04	g : 0.04	: : 0.02	$ : 0.02	h : 0.02	b : 0.02	
= : 0.20	d : 0.14	e : 0.10	c : 0.10	! : 0.08	b : 0.06	g : 0.06	" : 0.04	# : 0.04	i : 0.04	[ : 0.04	$ : 0.02	a : 0.02	h : 0.02	: : 0.02	
= : 0.18	e : 0.16	d : 0.12	! : 0.10	[ : 0.10	g : 0.10	b : 0.08	i : 0.04	c : 0.04	$ : 0.02	h : 0.02	: : 0.02	
e : 0.20	= : 0.18	g : 0.12	d : 0.10	b : 0.08	! : 0.08	i : 0.06	c : 0.06	" : 0.04	[ : 0.02	$ : 0.02	h : 0.02	
e : 0.24	= : 0.20	g : 0.12	d : 0.08	! : 0.08	i : 0.06	b : 0.06	[ : 0.04	" : 0.04	c : 0.02	$ : 0.02	h : 0.02	
= : 0.18	[ : 0.16	e : 0.14	d : 0.12	g : 0.12	i : 0.06	! : 0.06	b : 0.04	" : 0.04	c : 0.02	# : 0.02	$ : 0.02	
e : 0.18	= : 0.14	g : 0.14	d : 0.12	c : 0.08	i : 0.08	a : 0.06	b : 0.04	[ : 0.04	$ : 0.04	# : 0.02	" : 0.02	! : 0.02	
= : 0.14	" : 0.12	g : 0.12	e : 0.12	d : 0.10	c : 0.08	i : 0.08	[ : 0.06	b : 0.06	$ : 0.04	# : 0.04	! : 0.02	
" : 0.16	g : 0.12	d : 0.10	# : 0.10	e : 0.10	b : 0.08	= : 0.08	c : 0.08	i : 0.06	$ : 0.06	! : 0.04	
! : 0.24	" : 0.18	g : 0.08	# : 0.08	= : 0.06	i : 0.06	$ : 0.06	e : 0.06	b : 0.04	[ : 0.04	d : 0.04	c : 0.02	f : 0.02	
! : 0.20	[ : 0.12	" : 0.08	e : 0.08	# : 0.08	b : 0.06	a : 0.06	i : 0.06	g : 0.06	c : 0.06	= : 0.04	$ : 0.04	d : 0.02	f : 0.02	
d : 0.28	c : 0.16	b : 0.10	[ : 0.08	g : 0.06	" : 0.06	# : 0.06	! : 0.04	e : 0.04	i : 0.04	= : 0.02	$ : 0.02	f : 0.02	
d : 0.34	c : 0.28	! : 0.08	g : 0.06	b : 0.04	e : 0.04	= : 0.02	r : 0.02	$ : 0.02	" : 0.02	f : 0.02	i : 0.02	[ : 0.02	
d : 0.36	c : 0.30	! : 0.08	o : 0.04	[ : 0.04	b : 0.02	= : 0.02	r : 0.02	" : 0.02	e : 0.02	f : 0.02	g : 0.02	i : 0.02	
d : 0.34	c : 0.26	q : 0.06	o : 0.06	a : 0.04	! : 0.04	b : 0.02	= : 0.02	r : 0.02	" : 0.02	p : 0.02	e : 0.02	f : 0.02	g : 0.02	i : 0.02	
o : 0.48	c : 0.14	n : 0.10	d : 0.08	q : 0.06	m : 0.04	r : 0.02	" : 0.02	p : 0.02	b : 0.02	
o : 0.55	n : 0.14	c : 0.08	q : 0.06	m : 0.06	r : 0.02	" : 0.02	p : 0.02	b : 0.02	d : 0.02	
o : 0.57	n : 0.18	m : 0.08	q : 0.06	r : 0.02	b : 0.02	p : 0.02	c : 0.02	l : 0.02	
o : 0.57	n : 0.18	m : 0.10	q : 0.06	r : 0.02	b : 0.02	p : 0.02	l : 0.02	
o : 0.53	n : 0.18	q : 0.06	m : 0.06	d : 0.04	l : 0.04	b : 0.02	g : 0.02	r : 0.02	p : 0.02	
o : 0.51	d : 0.12	n : 0.08	c : 0.08	q : 0.06	m : 0.04	b : 0.02	g : 0.02	r : 0.02	l : 0.02	p : 0.02	
d : 0.36	c : 0.22	o : 0.08	q : 0.06	n : 0.04	g : 0.04	a : 0.04	b : 0.02	= : 0.02	l : 0.02	e : 0.02	f : 0.02	m : 0.02	i : 0.02	
c : 0.40	d : 0.38	b : 0.04	g : 0.04	= : 0.02	] : 0.02	o : 0.02	e : 0.02	f : 0.02	i : 0.02	
d : 0.34	c : 0.32	] : 0.10	g : 0.08	b : 0.06	= : 0.02	e : 0.02	f : 0.02	i : 0.02	
d : 0.30	c : 0.20	3 : 0.12	g : 0.08	a : 0.06	4 : 0.06	= : 0.04	b : 0.04	2 : 0.02	e : 0.02	f : 0.02	i : 0.02	
2 : 0.36	3 : 0.20	] : 0.08	g : 0.08	d : 0.06	= : 0.06	4 : 0.06	c : 0.02	e : 0.02	f : 0.02	i : 0.02	
2 : 0.36	3 : 0.20	= : 0.10	d : 0.06	g : 0.06	4 : 0.06	e : 0.04	] : 0.02	c : 0.02	b : 0.02	f : 0.02	i : 0.02	
b : 0.16	= : 0.16	d : 0.12	g : 0.10	e : 0.10	3 : 0.08	i : 0.08	4 : 0.06	c : 0.06	] : 0.04	2 : 0.02	
b : 0.18	= : 0.18	g : 0.14	c : 0.10	e : 0.10	i : 0.08	d : 0.08	a : 0.06	] : 0.06	
= : 0.18	g : 0.14	d : 0.12	e : 0.12	c : 0.10	b : 0.08	] : 0.08	i : 0.08	2 : 0.04	4 : 0.02	a : 0.02	
e : 0.20	= : 0.18	d : 0.10	3 : 0.10	g : 0.10	2 : 0.08	i : 0.06	c : 0.06	b : 0.04	] : 0.04	4 : 0.02	
e : 0.20	= : 0.18	2 : 0.14	3 : 0.10	g : 0.10	i : 0.06	d : 0.06	4 : 0.04	] : 0.04	c : 0.04	b : 0.02	
= : 0.18	e : 0.16	2 : 0.10	3 : 0.10	g : 0.10	d : 0.08	] : 0.08	i : 0.06	4 : 0.04	b : 0.04	c : 0.04	
e : 0.20	= : 0.18	c : 0.14	g : 0.10	b : 0.08	d : 0.08	i : 0.06	] : 0.04	4 : 0.04	3 : 0.02	a : 0.02	h : 0.02	
e : 0.18	= : 0.18	c : 0.14	b : 0.10	i : 0.08	] : 0.08	d : 0.08	g : 0.06	4 : 0.04	3 : 0.02	h : 0.02	
= : 0.18	c : 0.14	e : 0.12	d : 0.10	] : 0.08	i : 0.08	: : 0.08	3 : 0.04	b : 0.04	5 : 0.02	g : 0.02	f : 0.02	2 : 0.02	h : 0.02	4 : 0.02	

#score	684.2064096123511
#seq	49
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_UTR_m1_run2.txt

#BEAR
fffff[dddd[ccc[ddddooooooddddccc]ddddfff	chr19:54970267-54970495(+)$1	228	134	174	14.1902
gggg[bb[aeeeee[ddddoooooodddd]eeeee4444a	chr14:21733309-21733565(-)$1	256	66	106	14.5565
"""gggggggbb####cccooooooccc333bb]gggggg	chr9:15249503-15249756(-)$1	253	67	107	18.2268
meeeeegggggggccc[cccnnnnnccc]ccc]ggggggg	chr5:167980059-167980353(-)$1	294	132	172	13.5985
=========!!dddd!!bboooooobb333dddd4444==	chr12:121159961-121160221(+)$1	260	23	63	16.4156
dd####dddd[ffffff[aooooooa]ffffffdddd444	chr3:197477230-197477521(+)$1	291	206	246	13.0097
fffff:ffffffccc[cccooooooccc]ccc333fffff	chr21:44269749-44270001(-)$1	252	167	207	14.6253
!!iiiiiiiii[bb!!cccooooooccc]bbiiiiiiiii	chr17:79879113-79879357(-)$1	244	14	54	19.7923
"""cccffffffccc[cccooooooccc]ccc333fffff	chr21:44269602-44269855(-)$1	253	21	61	16.4020
===[ggggggg####bb!!bbmmmmbb22bbggggggg]=	chr6:44215480-44215757(+)$1	277	20	60	12.6650
iiiiiiiii"""gggggggnnnnnggggggg]iiiiiiii	chr20:24986864-24987128(-)$1	264	223	263	14.8625
[ggggggg[ccc[dddd[aooooooa]ddddcccgggggg	chr3:176914152-176914416(-)$1	264	70	110	16.9252
[ccc####==========qqqqqqqq==========ccc]	chr10:1094477-1094789(-)$1	312	120	160	12.9750
!!ggggggg"""ddddrrrrrrrrrdddd22gggggggdd	chr17:63556000-63556247(-)$1	247	149	189	13.0660
""hhhhhhhh$$$$$ddddoooooodddd333hhhhhhhh	chr2:240898537-240898828(-)$1	291	104	144	14.3389
cc"""eeeee"""ddddbboooooobb]ddddeeeeeccc	chr2:235887474-235887722(+)$1	248	115	155	14.2201
FFFggggggg[hhhhhhhhoooooohhhhhhhhggggggg	chr10:698396-698650(-)$1	254	51	91	13.0883
cc"""ggggggg[bb[cccooooooccc]bb]ggggggg4	chr12:50898802-50899051(+)$1	249	10	50	18.2439
=====[bb[a[bb[a[cccoooooocccabba]bb]====	chr1:182360314-182360561(-)$1	247	97	137	16.9895
ggg####dddd[eeeee[aooooooa]eeeeeddddgggg	chr5:138630413-138630674(+)$1	261	184	224	14.5204
gggg[a!!abb[ccc!!bboooooobb22cccbb]a22a]	chr6:32940774-32941007(+)$1	233	160	200	15.2286
gggg####ffffff[ddddoooooodddd]ffffff22gg	chr3:187454303-187454562(-)$1	259	32	72	15.7613
gggg####ffffff[ddddoooooodddd]ffffff22gg	chr3:187454373-187454589(-)$1	216	59	99	15.7613
==========!!bb[fffffflllffffff]bb=======	chr12:121160021-121160280(+)$1	259	173	213	13.4841
ffffggggggg!!a[bb!!allla22bb]a22ggggggg]	chr17:1462906-1463133(-)$1	227	153	193	13.5437
""a[ggggggg$$$$$cccmmmmccc4444ggggggg]a3	chr2:11917288-11917637(+)$1	349	138	178	13.7606
ee[iiiiiiiii####cccnnnnnccc333iiiiiiiii2	chr6:41034633-41034879(-)$1	246	87	127	16.1210
gggggg!!ccc!!ccc[bb[aooooooa]bb]ccc22ccc	chr16:89337982-89338247(-)$1	265	116	156	14.6578
ccc####ggggggg[ddddoooooodddd]ggggggg999	chr21:44269918-44270138(-)$1	220	84	124	14.9751
ggggg"""ccc[bbddddoooooodddd]bbccc22gggg	chr8:146279529-146279838(+)$1	309	24	64	15.5943
eeeeeggggggg####fffffflllffffff333gggggg	chr19:16038387-16038637(-)$1	250	49	89	12.2212
cc============[cccpppppppccc]===========	chr3:5258683-5258950(+)$1	267	16	56	14.4756
iiillliiiiiiiiiddddooooooddddeeeee"""ccc	chr7:917743-918032(+)$1	289	132	172	14.4428
cc"""eeeee"""ddddbboooooobb]ddddeeeeeccc	chr2:235887522-235887787(+)$1	265	67	107	14.2201
"ccc[iiiiiiiii[bbrrrrrrrrrbb]iiiiiiiii]c	chr12:121159738-121160010(+)$1	272	138	178	14.2585
:eeeee"""ccc[ccccccooooooccc333cccccc444	chr17:20905339-20905651(-)$1	312	201	241	15.6752
hhdddd[ggggggg!!cccooooooccc4444ggggggg]	chr22:45714593-45714861(+)$1	268	202	242	17.6956
iiiii####gggggggcccmmmmccc333gggggggiiii	chr6:89791582-89791816(+)$1	234	4	44	14.6219
hhhhhhh[gggggggcccaooooooa]ccc333ggggggg	chr6:74230385-74230644(-)$1	259	65	105	17.0410
!!iiiiiiiii!!ccc[a[ccclllccc]accciiiiiii	chr4:1950076-1950341(+)$1	265	85	125	15.9407
ddd[a[ffffff[a[cccammmma]ccc]a]ffffff]a]	chr13:99103991-99104254(-)$1	263	218	258	12.4697
hhhggggggg[a####bb[ccclllccc]bb4444a]ggg	chr6:32940753-32940974(+)$1	221	115	155	13.8343
h[ccc[bb!!a[bbddddoooooodddd]bb]a]bb]ccc	chr1:6259213-6259574(-)$1	361	65	105	14.0827
==========eeeee[cccooooooccceeeee22=====	chr19:40790538-40790807(-)$1	269	158	198	17.4107
ee==============accclllccc]a]===========	chr9:127020515-127020781(+)$1	266	59	99	16.1732
========####ccc[cccooooooccc]ccc4444====	chr3:47516867-47517129(-)$1	262	154	194	19.2679
iiiiiiii"""ccc"""bbmmmmbb]ccc22iiiiiiiii	chr17:79878966-79879226(-)$1	260	13	53	13.5691
"ccc"""ccc[ccc!!ddddoooooodddd22ccc]cccc	chr14:35451059-35451356(-)$1	297	196	236	15.5133
b[iiiiiiiii[bb!!ddddnnnnndddd]bb22iiiiii	chr7:157130188-157130472(+)$1	284	192	232	14.2395
hhhhh[dddd####eeeeeooooooeeeee333ddddhhh	chr21:44269443-44269691(-)$1	248	75	115	13.5184

#otherMatches

#Seq PSSM
uagugaguggaggccagggaugcugcCCUGCCACUGCCAU	chr19:54970267-54970495(+)$1	228	134	174	14.1902
UGGUUGUGGUUGAGCUAUAAAGUUAUGUAUCUUGAAAAUU	chr14:21733309-21733565(-)$1	256	66	106	14.5565
UAAGGUGAGUGCUGAAAUUGAAGAAAAUAGUGUGACUUGC	chr9:15249503-15249756(-)$1	253	67	107	18.2268
UCCAGAUCUUUGGUCUGGAGUUCAUCUUGGGGUCUGAAGA	chr5:167980059-167980353(-)$1	294	132	172	13.5985
AGGAGGAGGUGGGCAAUCUGGCUUGAGUUGUGCUGUAUCC	chr12:121159961-121160221(+)$1	260	23	63	16.4156
CUUUCCCUGGUCGCCGGGCGUUCCAGGCCGGCGCCGGCCA	chr3:197477230-197477521(+)$1	291	206	246	13.0097
CUUCGUGUCCGCUGCAUCUUCCUCUAGGAGCAUCUGUGGG	chr21:44269749-44270001(-)$1	252	167	207	14.6253
UCUCUUGCCGGUGCCGUGGUGUCGUCCGUGCCUGGUGAGG	chr17:79879113-79879357(-)$1	244	14	54	19.7923
CUUCGUGUCCGCUGCAUCUUCCUCUAGGAGCAUCUGUGGG	chr21:44269602-44269855(-)$1	253	21	61	16.4020
GGGAGGGGAGCAGGUUCUGGAAGAUUCAUGGGCUCCUUCC	chr6:44215480-44215757(+)$1	277	20	60	12.6650
GGAGGGAGUUCAAAUAAAGCUUUAUUUUGUUCAUUUUCUC	chr20:24986864-24987128(-)$1	264	223	263	14.8625
accccggccggcgugcugggggcugcgggcggcuguuggg	chr3:176914152-176914416(-)$1	264	70	110	16.9252
UGGCGGCGUUGGUCUCCCGAACUGGAGGGAGGCCGGGCCU	chr10:1094477-1094789(-)$1	312	120	160	12.9750
CUGGCUUCGGCGGCCUUCGUCUUCCAGGUAACGGGGCCGC	chr17:63556000-63556247(-)$1	247	149	189	13.0660
GGUCUGCCCUGUGGUCAGGAUUGCCCUUGUGAGGGGCAGA	chr2:240898537-240898828(-)$1	291	104	144	14.3389
AGGAUUUCUGGGUGCCGGACAUGCUUCUCGGUCAGAGCUG	chr2:235887474-235887722(+)$1	248	115	155	14.2201
GGUGUUAUUUUGUUCUGUUUUAUUUGGUAGAGCAAGUGAU	chr10:698396-698650(-)$1	254	51	91	13.0883
GUGGUGCUCGGCGGCCGGAGCCGGAUCCUGUAGCCGGGUG	chr12:50898802-50899051(+)$1	249	10	50	18.2439
GCGCUGUGGAUGGAGUGGCGGUGCGGUCCCCUGUGGAGCG	chr1:182360314-182360561(-)$1	247	97	137	16.9895
CCAGAUAUUUCUAGAACGGUUAUGGUGGUUCUGAAAUGGC	chr5:138630413-138630674(+)$1	261	184	224	14.5204
CCGUGGCCCAGUCUUAACCGAGUCAGGCAGAGCUAGUUUG	chr6:32940774-32941007(+)$1	233	160	200	15.2286
UCUUAAGACGAGUUGGCUUGCAAAGGAGUGAACUUGAGAA	chr3:187454303-187454562(-)$1	259	32	72	15.7613
UCUUAAGACGAGUUGGCUUGCAAAGGAGUGAACUUGAGAA	chr3:187454373-187454589(-)$1	216	59	99	15.7613
GGGUGUAAACCAGUAUGAGUUUGAAAUUCAAGCGUUUGUA	chr12:121160021-121160280(+)$1	259	173	213	13.4841
GCUGUUUACUAGCCUGGAGCAAGGAGCCUGAGUGGUGAGC	chr17:1462906-1463133(-)$1	227	153	193	13.5437
AACGGGCAGCAUUUAUGGUGGUGGCCUGUUUGCUGUUGGG	chr2:11917288-11917637(+)$1	349	138	178	13.7606
GUAUGCUACCUGAUUUGUUUGGCUGGCCACUAGGUGGCAG	chr6:41034633-41034879(-)$1	246	87	127	16.1210
agagcuagggucucguuucacucuucugcgaugcguagcc	chr16:89337982-89338247(-)$1	265	116	156	14.6578
UGUGACCAGCUCAGAGGAUGGGGCUGUCCCCUGGGCUCUA	chr21:44269918-44270138(-)$1	220	84	124	14.9751
AACCUGAAACAAUCCCCCUCCCUUGGGGUGGUGUAGGGGU	chr8:146279529-146279838(+)$1	309	24	64	15.5943
GGCAUUCUGUAGAGUGUUGAGCUAUGCUCAGGUGUUGCAG	chr19:16038387-16038637(-)$1	250	49	89	12.2212
AGGCUUUAGAUUAGUGCCUUAUAUUGGUUUUGGUUUGGGG	chr3:5258683-5258950(+)$1	267	16	56	14.4756
UGCUGCGUGGCUUGGUUGAUUGUCUUCAGGACUGCUCUGU	chr7:917743-918032(+)$1	289	132	172	14.4428
AGGAUUUCUGGGUGCCGGACAUGCUUCUCGGUCAGAGCUG	chr2:235887522-235887787(+)$1	265	67	107	14.2201
AGUAGAGUGUGUCUUGGAAACAUGCCCCUGGGCACACUGU	chr12:121159738-121160010(+)$1	272	138	178	14.2585
ACGGUGUGUCUGUCAUCUCAGUCUGGAGUAAAUGCAGUGU	chr17:20905339-20905651(-)$1	312	201	241	15.6752
UAAGCGAGCCACAGACCACCCAGGAGUGCGAGCUGUGGCC	chr22:45714593-45714861(+)$1	268	202	242	17.6956
CUGGGCCCGGCUUUCGGCCUCCCGGCUAUCGGGAGCCCCA	chr6:89791582-89791816(+)$1	234	4	44	14.6219
GGCCUUGCGCUUAAGGAGCCCCUUCGCCUCGUGCUUGAGU	chr6:74230385-74230644(-)$1	259	65	105	17.0410
CUGGAGUAAGGCUUGCUGUGGGACGCCCUCGUACUUUGCU	chr4:1950076-1950341(+)$1	265	85	125	15.9407
GGAGGGUUCGUGCAGCAGCUGUUGACUGGUACAUGAAGCA	chr13:99103991-99104254(-)$1	263	218	258	12.4697
GGUGGCGGCUCGGCUACUGCUCGUGGAGGGGAAUACAGGU	chr6:32940753-32940974(+)$1	221	115	155	13.8343
UGGGCUGGCAGGUCGGCCGGAGCGGGCCAGAGCCCCUGCC	chr1:6259213-6259574(-)$1	361	65	105	14.0827
CUUCCCCAACUGUGGCUGGGUUAUAUCACCACGGCGUUGG	chr19:40790538-40790807(-)$1	269	158	198	17.4107
CCCGGGGUGUGCGCGUCCCCGGCGGGUGUGCGUGUGCACC	chr9:127020515-127020781(+)$1	266	59	99	16.1732
GGGAAGCUGUUGUAGAACCUGCUUUGGUGCUGUUUGGGUU	chr3:47516867-47517129(-)$1	262	154	194	19.2679
GGUUUAGUUGUGCUUUUGCUUCUGCUGGCUUGCUGGACCU	chr17:79878966-79879226(-)$1	260	13	53	13.5691
agaugaauuugcucuguagagaauggucuggugaggggag	chr14:35451059-35451356(-)$1	297	196	236	15.5133
GAAGAGCAGGCUGCCUUUCUCACUCAGAAUGUUUGUCUGC	chr7:157130188-157130472(+)$1	284	192	232	14.2395
UCCCUUGUGGGAAGUGAGAAACACGUUUCGGAGUCGCAGG	chr21:44269443-44269691(-)$1	248	75	115	13.5184

#DB
(((((.((((.(((.((((......))))))).)))))))	chr19:54970267-54970495(+)$1	1	134	174	14.1902
((((.((.((((((.((((......)))).)))))....)	chr14:21733309-21733565(-)$1	1	66	106	14.5565
...(((((((((....(((......)))...)).))))))	chr9:15249503-15249756(-)$1	1	67	107	18.2268
.)))))((((((((((.(((.....))).))).)))))))	chr5:167980059-167980353(-)$1	1	132	172	13.5985
(((((((((..((((..((......))...))))....))	chr12:121159961-121160221(+)$1	1	23	63	16.4156
((....((((.((((((.(......).))))))))))...	chr3:197477230-197477521(+)$1	1	206	246	13.0097
))))).(((((((((.(((......))).)))...)))))	chr21:44269749-44270001(-)$1	1	167	207	14.6253
..(((((((((.((..(((......))).)))))))))))	chr17:79879113-79879357(-)$1	1	14	54	19.7923
...((((((((((((.(((......))).)))...)))))	chr21:44269602-44269855(-)$1	1	21	61	16.4020
(((.(((((((....((..((....))..))))))))).)	chr6:44215480-44215757(+)$1	1	20	60	12.6650
(((((((((...(((((((.....))))))).))))))))	chr20:24986864-24987128(-)$1	1	223	263	14.8625
.(((((((.(((.((((.(......).)))))))))))))	chr3:176914152-176914416(-)$1	1	70	110	16.9252
.(((....((((((((((........))))))))))))).	chr10:1094477-1094789(-)$1	1	120	160	12.9750
..(((((((...((((.........))))..)))))))))	chr17:63556000-63556247(-)$1	1	149	189	13.0660
..((((((((.....((((......))))...))))))))	chr2:240898537-240898828(-)$1	1	104	144	14.3389
((...(((((...((((((......)).))))))))))))	chr2:235887474-235887722(+)$1	1	115	155	14.2201
((((((((((.((((((((......)))))))))))))))	chr10:698396-698650(-)$1	1	51	91	13.0883
((...(((((((.((.(((......))).)).))))))).	chr12:50898802-50899051(+)$1	1	10	50	18.2439
(((((.((.(.((.(.(((......))))))).)).))))	chr1:182360314-182360561(-)$1	1	97	137	16.9895
(((....((((.(((((.(......).)))))))))))))	chr5:138630413-138630674(+)$1	1	184	224	14.5204
((((.(..(((.(((..((......))..))))).)..).	chr6:32940774-32941007(+)$1	1	160	200	15.2286
((((....((((((.((((......)))).))))))..))	chr3:187454303-187454562(-)$1	1	32	72	15.7613
((((....((((((.((((......)))).))))))..))	chr3:187454373-187454589(-)$1	1	59	99	15.7613
((((((((((..((.((((((...)))))).)))))))))	chr12:121160021-121160280(+)$1	1	173	213	13.4841
(((((((((((..(.((..(...)..)).)..))))))).	chr17:1462906-1463133(-)$1	1	153	193	13.5437
..(.(((((((.....(((....)))....))))))).).	chr2:11917288-11917637(+)$1	1	138	178	13.7606
((.(((((((((....(((.....)))...))))))))).	chr6:41034633-41034879(-)$1	1	87	127	16.1210
((((((..(((..(((.((.(......).)).)))..)))	chr16:89337982-89338247(-)$1	1	116	156	14.6578
(((....(((((((.((((......)))).)))))))...	chr21:44269918-44270138(-)$1	1	84	124	14.9751
(((((...(((.((((((......)))).)))))..))))	chr8:146279529-146279838(+)$1	1	24	64	15.5943
((((((((((((....((((((...))))))...))))))	chr19:16038387-16038637(-)$1	1	49	89	12.2212
((((((((((((((.(((.......))).)))))))))))	chr3:5258683-5258950(+)$1	1	16	56	14.4756
(((...)))))))))((((......))))(((((...(((	chr7:917743-918032(+)$1	1	132	172	14.4428
((...(((((...((((((......)).))))))))))))	chr2:235887522-235887787(+)$1	1	67	107	14.2201
.(((.(((((((((.((.........)).))))))))).)	chr12:121159738-121160010(+)$1	1	138	178	14.2585
.(((((...(((.((((((......)))...))))))...	chr17:20905339-20905651(-)$1	1	201	241	15.6752
((((((.(((((((..(((......)))....))))))).	chr22:45714593-45714861(+)$1	1	202	242	17.6956
(((((....((((((((((....)))...)))))))))))	chr6:89791582-89791816(+)$1	1	4	44	14.6219
(((((((.(((((((((((......).)))...)))))))	chr6:74230385-74230644(-)$1	1	65	105	17.0410
..(((((((((..(((.(.(((...))).)))))))))))	chr4:1950076-1950341(+)$1	1	85	125	15.9407
(((.(.((((((.(.((((....).))).).)))))).).	chr13:99103991-99104254(-)$1	1	218	258	12.4697
((((((((((.(....((.(((...))).))....).)))	chr6:32940753-32940974(+)$1	1	115	155	13.8343
(.(((.((..(.((((((......)))).)).).)).)))	chr1:6259213-6259574(-)$1	1	65	105	14.0827
(((((((((((((((.(((......))))))))..)))))	chr19:40790538-40790807(-)$1	1	158	198	17.4107
))((((((((((((((((((...))).).)))))))))))	chr9:127020515-127020781(+)$1	1	59	99	16.1732
((((((((....(((.(((......))).)))....))))	chr3:47516867-47517129(-)$1	1	154	194	19.2679
((((((((...(((...((....)).)))..)))))))))	chr17:79878966-79879226(-)$1	1	13	53	13.5691
.(((...(((.(((..((((......))))..))).))))	chr14:35451059-35451356(-)$1	1	196	236	15.5133
(.(((((((((.((..((((.....)))).))..))))))	chr7:157130188-157130472(+)$1	1	192	232	14.2395
(((((.((((....(((((......)))))...)))))))	chr21:44269443-44269691(-)$1	1	75	115	13.5184

#PSSM
g : 0.14	" : 0.12	= : 0.12	c : 0.10	h : 0.10	i : 0.08	f : 0.06	! : 0.06	e : 0.06	d : 0.04	[ : 0.04	m : 0.02	F : 0.02	: : 0.02	b : 0.02	
g : 0.16	c : 0.16	= : 0.12	e : 0.10	" : 0.08	i : 0.08	h : 0.08	f : 0.06	! : 0.06	d : 0.04	[ : 0.04	F : 0.02	
g : 0.18	= : 0.16	i : 0.14	" : 0.10	c : 0.10	h : 0.08	f : 0.06	e : 0.06	d : 0.04	# : 0.02	F : 0.02	a : 0.02	[ : 0.02	
g : 0.21	= : 0.14	i : 0.14	c : 0.10	f : 0.06	e : 0.06	# : 0.06	[ : 0.06	h : 0.06	" : 0.06	l : 0.02	d : 0.02	
g : 0.19	= : 0.14	i : 0.14	# : 0.12	" : 0.08	[ : 0.06	e : 0.06	h : 0.06	f : 0.04	c : 0.04	l : 0.02	d : 0.02	a : 0.02	
g : 0.21	# : 0.14	i : 0.14	= : 0.12	[ : 0.10	e : 0.08	h : 0.04	" : 0.04	b : 0.02	: : 0.02	c : 0.02	a : 0.02	l : 0.02	d : 0.02	
g : 0.21	i : 0.16	= : 0.12	# : 0.12	d : 0.06	b : 0.06	f : 0.06	" : 0.06	h : 0.04	e : 0.04	! : 0.04	[ : 0.02	
g : 0.25	i : 0.16	= : 0.12	d : 0.08	# : 0.08	f : 0.06	[ : 0.04	e : 0.04	b : 0.04	! : 0.04	" : 0.04	h : 0.02	c : 0.02	
g : 0.25	i : 0.14	= : 0.12	f : 0.10	d : 0.08	c : 0.06	a : 0.04	[ : 0.04	e : 0.04	" : 0.04	# : 0.04	h : 0.02	! : 0.02	
g : 0.25	i : 0.12	f : 0.10	c : 0.10	= : 0.10	d : 0.08	e : 0.06	" : 0.06	! : 0.04	h : 0.02	a : 0.02	b : 0.02	# : 0.02	
g : 0.19	[ : 0.12	i : 0.12	f : 0.10	" : 0.10	c : 0.08	= : 0.06	e : 0.04	b : 0.04	! : 0.04	# : 0.04	$ : 0.02	d : 0.02	a : 0.02	
g : 0.14	f : 0.12	[ : 0.12	c : 0.10	" : 0.08	! : 0.08	# : 0.06	= : 0.06	i : 0.06	e : 0.04	b : 0.04	$ : 0.04	d : 0.02	h : 0.02	a : 0.02	
c : 0.14	# : 0.12	g : 0.12	b : 0.12	[ : 0.08	e : 0.06	f : 0.06	= : 0.06	! : 0.06	d : 0.04	$ : 0.04	" : 0.04	i : 0.04	h : 0.02	
c : 0.21	# : 0.12	b : 0.12	d : 0.10	g : 0.10	e : 0.06	f : 0.06	= : 0.06	$ : 0.04	a : 0.04	i : 0.04	h : 0.02	[ : 0.02	
[ : 0.19	c : 0.16	d : 0.14	# : 0.10	! : 0.08	g : 0.06	e : 0.06	= : 0.04	$ : 0.04	f : 0.02	h : 0.02	b : 0.02	a : 0.02	i : 0.02	" : 0.02	
d : 0.25	c : 0.14	! : 0.12	[ : 0.12	# : 0.08	b : 0.06	f : 0.04	g : 0.04	= : 0.04	e : 0.04	h : 0.02	$ : 0.02	" : 0.02	
c : 0.32	d : 0.27	b : 0.08	[ : 0.06	f : 0.06	! : 0.04	e : 0.04	g : 0.02	= : 0.02	r : 0.02	h : 0.02	a : 0.02	" : 0.02	
c : 0.36	d : 0.21	b : 0.14	[ : 0.06	! : 0.04	r : 0.04	f : 0.04	g : 0.02	= : 0.02	h : 0.02	a : 0.02	e : 0.02	
c : 0.30	d : 0.18	b : 0.12	a : 0.10	! : 0.04	r : 0.04	f : 0.04	o : 0.04	[ : 0.04	g : 0.02	q : 0.02	h : 0.02	p : 0.02	e : 0.02	
o : 0.58	c : 0.08	m : 0.08	n : 0.04	r : 0.04	f : 0.04	d : 0.04	b : 0.02	q : 0.02	a : 0.02	[ : 0.02	p : 0.02	
o : 0.60	n : 0.08	m : 0.08	r : 0.04	f : 0.04	l : 0.04	c : 0.04	b : 0.02	q : 0.02	a : 0.02	p : 0.02	
o : 0.62	m : 0.10	n : 0.08	l : 0.06	r : 0.04	c : 0.04	q : 0.02	f : 0.02	p : 0.02	
o : 0.62	l : 0.12	m : 0.10	n : 0.08	r : 0.04	q : 0.02	p : 0.02	
o : 0.62	n : 0.08	l : 0.08	c : 0.06	r : 0.04	a : 0.04	m : 0.02	q : 0.02	p : 0.02	b : 0.02	
o : 0.58	c : 0.08	l : 0.06	n : 0.04	r : 0.04	d : 0.04	m : 0.02	g : 0.02	q : 0.02	f : 0.02	2 : 0.02	p : 0.02	] : 0.02	b : 0.02	
c : 0.38	d : 0.21	b : 0.10	a : 0.08	f : 0.04	o : 0.04	g : 0.02	q : 0.02	h : 0.02	2 : 0.02	r : 0.02	] : 0.02	e : 0.02	
c : 0.34	d : 0.23	b : 0.14	] : 0.10	f : 0.04	g : 0.02	= : 0.02	h : 0.02	4 : 0.02	o : 0.02	3 : 0.02	e : 0.02	
c : 0.34	d : 0.25	3 : 0.06	f : 0.06	2 : 0.04	] : 0.04	e : 0.04	b : 0.04	a : 0.04	g : 0.02	= : 0.02	h : 0.02	4 : 0.02	
] : 0.32	d : 0.25	3 : 0.10	f : 0.06	e : 0.06	2 : 0.04	4 : 0.04	c : 0.04	g : 0.02	= : 0.02	h : 0.02	a : 0.02	
b : 0.16	c : 0.14	] : 0.10	3 : 0.10	d : 0.08	e : 0.08	f : 0.06	= : 0.06	a : 0.06	g : 0.04	2 : 0.04	4 : 0.04	h : 0.02	i : 0.02	
b : 0.18	c : 0.14	3 : 0.10	e : 0.08	d : 0.08	f : 0.08	g : 0.08	2 : 0.08	= : 0.06	] : 0.04	i : 0.04	h : 0.02	4 : 0.02	
c : 0.19	g : 0.10	e : 0.08	f : 0.08	i : 0.08	] : 0.08	3 : 0.08	b : 0.06	d : 0.06	= : 0.06	2 : 0.04	4 : 0.04	h : 0.02	a : 0.02	
g : 0.16	c : 0.12	e : 0.10	3 : 0.10	i : 0.10	f : 0.08	] : 0.06	b : 0.06	= : 0.06	d : 0.04	h : 0.04	4 : 0.04	a : 0.02	2 : 0.02	
g : 0.21	i : 0.12	d : 0.10	c : 0.10	e : 0.08	= : 0.08	3 : 0.06	f : 0.06	] : 0.04	b : 0.04	4 : 0.04	2 : 0.04	h : 0.02	
g : 0.27	i : 0.14	d : 0.08	= : 0.08	e : 0.06	4 : 0.06	f : 0.06	c : 0.06	3 : 0.04	b : 0.04	2 : 0.04	h : 0.02	] : 0.02	" : 0.02	
g : 0.27	i : 0.14	f : 0.10	= : 0.10	d : 0.08	4 : 0.06	e : 0.04	] : 0.04	a : 0.04	2 : 0.04	h : 0.02	" : 0.02	c : 0.02	b : 0.02	
g : 0.30	i : 0.16	= : 0.12	2 : 0.08	d : 0.06	f : 0.06	c : 0.06	4 : 0.04	e : 0.04	] : 0.04	h : 0.02	" : 0.02	
g : 0.27	i : 0.16	c : 0.14	= : 0.12	4 : 0.08	f : 0.06	2 : 0.06	h : 0.04	] : 0.04	9 : 0.02	
g : 0.27	= : 0.14	i : 0.14	c : 0.14	f : 0.06	4 : 0.06	a : 0.06	] : 0.04	h : 0.04	d : 0.02	9 : 0.02	
g : 0.21	= : 0.16	c : 0.14	i : 0.12	] : 0.10	f : 0.06	4 : 0.06	h : 0.04	a : 0.02	d : 0.02	3 : 0.02	2 : 0.02	9 : 0.02	

#score	752.2732037095379
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363FKB_YWHAG_CDS_m2_run1.txt

#BEAR
ddddrrrrrrrrrddddb	chr1:16257660-16257917(+)$1	257	79	97	8.8653
ffffffpppppppfffff	chr5:71491431-71491669(+)$1	238	9	27	12.3702
bddddrrrrrrrrrdddd	chr5:71490576-71490832(+)$1	256	86	104	8.9760
hhhhhhppppppphhhhh	chr7:1131212-1131475(-)$1	263	76	94	11.8523
bb!!bbpppppppbb22b	chr17:27008802-27009067(+)$1	265	93	111	12.2470
iiiiiipppppppiiiii	chr13:108518035-108518327(-)$1	292	63	81	13.6376
ggggggpppppppggggg	chr8:94747044-94747314(-)$1	270	223	241	13.3093
dd!!bbpppppppbb22d	chr19:39138284-39138537(+)$1	253	12	30	12.5037
gggg[apppppppa]ggg	chr8:94748457-94748690(-)$1	233	192	210	13.4040
ee[cccpppppppccc]e	chr8:94747774-94748010(-)$1	236	73	91	13.4526
======ppppppp=====	chr11:62294594-62294832(-)$1	238	208	226	13.7857
eeee[apppppppa]eee	chr16:89348867-89349114(-)$1	247	205	223	12.6624
ddd[bbrrrrrrrrrbb]	chr16:89347792-89348081(-)$1	289	42	60	8.9301
bbddddpppppppdddd]	chr10:120801690-120801927(-)$1	237	49	67	12.3438
!bb[bbpppppppbb333	chr16:89348634-89348889(-)$1	255	102	120	12.8782
iiiiiipppppppiiiii	chr19:39959300-39959602(+)$1	302	185	203	13.6376
:eeeeepppppppeeeee	chr19:49376915-49377175(+)$1	260	217	235	11.4175
d"""bbpppppppbb444	chr19:49377468-49377731(+)$1	263	113	131	12.6921
a[ddddpppppppdddd]	chr10:71148852-71149104(+)$1	252	149	167	12.8205
!bb[bbpppppppbb333	chr16:89348751-89348973(-)$1	222	186	204	12.8782
d[ddddpppppppddddd	chr22:36697528-36697774(-)$1	246	208	226	12.5415
ffffffpppppppfffff	chr16:89350307-89350602(-)$1	295	33	51	12.3702
hhhhhhppppppphhhhh	chr16:87735153-87735409(-)$1	256	87	105	11.8523
[cccrrrrrrrrrccc]b	chr12:6691268-6691482(-)$1	214	92	110	9.8227
iiiiiipppppppiiiii	chr16:89347434-89347678(-)$1	244	162	180	13.6376
d[a[bbpppppppbb]a]	chr11:62297644-62297878(-)$1	234	73	91	13.1416
hhhhhhppppppphhhhh	chr8:94752685-94752943(-)$1	258	52	70	11.8523
!!ddddpppppppddddc	chr9:133760237-133760484(+)$1	247	164	182	12.8458
ffffffpppppppfffff	chr11:62297228-62297547(-)$1	319	222	240	12.3702
gg[bbrrrrrrrrrbb]g	chr1:16255362-16255598(+)$1	236	187	205	9.4588
ceeeeepppppppeeeee	chr8:144999533-144999816(-)$1	283	258	276	12.3474
ffff[apppppppa]fff	chr11:71725390-71725668(-)$1	278	2	20	12.6493
ddd[bbpppppppbb]dd	chr8:94745802-94746036(-)$1	234	205	223	12.7355
iiiiiipppppppiiiii	chr11:62294489-62294767(-)$1	278	143	161	13.6376
fff[bbpppppppbbfff	chr17:27005815-27006082(+)$1	267	88	106	12.7013
[cccrrrrrrrrrccc]b	chr16:89348127-89348411(-)$1	284	144	162	9.8227
!!bbbbpppppppbb]bb	chr5:71491920-71492210(+)$1	290	178	196	12.2534
##ddddrrrrrrrrrddd	chr17:20799074-20799334(+)$1	260	86	104	9.0031
iiiiiipppppppiiiii	chr16:89347358-89347609(-)$1	251	93	111	13.6376
e!!cccpppppppccc22	chr1:16259147-16259392(+)$1	245	34	52	13.2381
======ppppppp=====	chr11:71724803-71725026(-)$1	223	12	30	13.7857
ff[cccpppppppcccff	chr16:89346585-89346860(-)$1	275	50	68	13.2881
::cccapppppppa]ccc	chr16:89347152-89347422(-)$1	270	97	115	11.3568
h[a[bbpppppppbb]a]	chr20:31022362-31022605(+)$1	243	92	110	13.1177
cc[cccpppppppccc]c	chr1:16257502-16257777(+)$1	275	63	81	13.6980
:eeeeepppppppeeeee	chr17:27013571-27013821(+)$1	250	144	162	11.4175
ccddddpppppppdddd:	chr10:129902542-129902784(-)$1	242	56	74	11.7664
$$ddddpppppppdddd6	chr16:89350039-89350291(-)$1	252	210	228	11.6922
dd[cccpppppppcccdd	chr9:134350836-134351116(+)$1	280	77	95	13.1750
F:ddddpppppppdddd:	chr19:11138457-11138727(+)$1	270	195	213	10.3091
[cccrrrrrrrrrccc]c	chr11:62287152-62287430(-)$1	278	85	103	10.0120
ee[cccpppppppccc]e	chr1:54703734-54703993(-)$1	259	69	87	13.4526
bddddrrrrrrrrrdddd	chr5:71490506-71490752(+)$1	246	156	174	8.9760
hhhhhhppppppphhhhh	chr16:87735210-87735459(-)$1	249	137	155	11.8523
ddddddpppppppdddd2	chr8:94745836-94746125(-)$1	289	140	158	12.2981
cc[cccpppppppccc]c	chr11:71724492-71724737(-)$1	245	4	22	13.6980
cc!!bbrrrrrrrrrbb2	chr11:71725471-71725735(-)$1	264	108	126	9.0375
ggggggpppppppggggg	chr8:94748093-94748357(-)$1	264	221	239	13.3093
ggggggpppppppggggg	chr17:27023909-27024175(+)$1	266	138	156	13.3093
:eeeeepppppppeeeee	chr11:62300265-62300547(-)$1	282	129	147	11.4175
ffffffpppppppfffff	chr14:65241808-65242135(-)$1	327	60	78	12.3702
!!bbbbpppppppbb]bb	chr5:71492048-71492300(+)$1	252	50	68	12.2534
fffffrrrrrrrrrffff	chr8:94752623-94752867(-)$1	244	46	64	9.0709
ffffffpppppppfffff	chr1:16256852-16257091(+)$1	239	217	235	12.3702

#otherMatches

#Seq PSSM
ACAGAAGAGAAGACUGUG	chr1:16257660-16257917(+)$1	257	79	97	8.8653
UGCUUUAAAACCAAAAGU	chr5:71491431-71491669(+)$1	238	9	27	12.3702
CCCAGUACAACAUCCUGG	chr5:71490576-71490832(+)$1	256	86	104	8.9760
AGGCCCACGCCCCGGGCU	chr7:1131212-1131475(-)$1	263	76	94	11.8523
CCAGGUGAAGGUGACGAG	chr17:27008802-27009067(+)$1	265	93	111	12.2470
UUCCUACACACUUUGGGA	chr13:108518035-108518327(-)$1	292	63	81	13.6376
ACCAAUAUACUCAGUUGG	chr8:94747044-94747314(-)$1	270	223	241	13.3093
ugaagcggcgguagcggc	chr19:39138284-39138537(+)$1	253	12	30	12.5037
UGCAACAGAUGAAGAUGC	chr8:94748457-94748690(-)$1	233	192	210	13.4040
UGAGUUUGGUGGUAAUGC	chr8:94747774-94748010(-)$1	236	73	91	13.4526
UCAGUGGGCCAGACAUUG	chr11:62294594-62294832(-)$1	238	208	226	13.7857
GGAGAGGCACAGACACUC	chr16:89348867-89349114(-)$1	247	205	223	12.6624
UCCUGCUAAGAAACCGCC	chr16:89347792-89348081(-)$1	289	42	60	8.9301
GGCGCUGAUGAUGAGCGA	chr10:120801690-120801927(-)$1	237	49	67	12.3438
ACUCCGGCCAGUACGAAA	chr16:89348634-89348889(-)$1	255	102	120	12.8782
CGCCAUGUCUGCUGUGGU	chr19:39959300-39959602(+)$1	302	185	203	13.6376
UCCAAGCCCAGCACUUGG	chr19:49376915-49377175(+)$1	260	217	235	11.4175
UGGAUCAGAUGAGGAAGA	chr19:49377468-49377731(+)$1	263	113	131	12.6921
UGAUGACCUGUGCUUAUG	chr10:71148852-71149104(+)$1	252	149	167	12.8205
ACUCCGGCCAGUACGAAA	chr16:89348751-89348973(-)$1	222	186	204	12.8782
CAGGCUCAGUCCAGGUCG	chr22:36697528-36697774(-)$1	246	208	226	12.5415
UUUUUAAAGAAGAUAAAG	chr16:89350307-89350602(-)$1	295	33	51	12.3702
GCGCACGAGAAGGGUGUG	chr16:87735153-87735409(-)$1	256	87	105	11.8523
GACCUUUGCUGAUGGUGU	chr12:6691268-6691482(-)$1	214	92	110	9.8227
CAGCAGAGCGUUCCUGCU	chr16:89347434-89347678(-)$1	244	162	180	13.6376
CCCAAAGUUGACAUUAGU	chr11:62297644-62297878(-)$1	234	73	91	13.1416
GAUCUUGAGAGUGAAGAU	chr8:94752685-94752943(-)$1	258	52	70	11.8523
AAGGCUGGAGGAAAGCCC	chr9:133760237-133760484(+)$1	247	164	182	12.8458
GGCUUUAAAGGAGAGGGC	chr11:62297228-62297547(-)$1	319	222	240	12.3702
GUACCAAAGGAAAAGGGG	chr1:16255362-16255598(+)$1	236	187	205	9.4588
GGAGGUGGAGCUGGCCUC	chr8:144999533-144999816(-)$1	283	258	276	12.3474
CAGCACACAGGCAGCGCU	chr11:71725390-71725668(-)$1	278	2	20	12.6493
UAAUGUGAAUGAAAUUUU	chr8:94745802-94746036(-)$1	234	205	223	12.7355
UCAGUGGGCCAGACAUUG	chr11:62294489-62294767(-)$1	278	143	161	13.6376
GUAUGAACAGAUCUCUGC	chr17:27005815-27006082(+)$1	267	88	106	12.7013
AGGCAAGAAAGACGCCAG	chr16:89348127-89348411(-)$1	284	144	162	9.8227
GAGGAUGAGGAAAGUGCC	chr5:71491920-71492210(+)$1	290	178	196	12.2534
ACGCUGUUCUUCCACCAG	chr17:20799074-20799334(+)$1	260	86	104	9.0031
CAGCAGAGCGUUCCUGCU	chr16:89347358-89347609(-)$1	251	93	111	13.6376
GAAAGAAGACGUGUCUGC	chr1:16259147-16259392(+)$1	245	34	52	13.2381
GGGCACAGUCAGAGUGCC	chr11:71724803-71725026(-)$1	223	12	30	13.7857
CCAUCUCCACCUCAGAGG	chr16:89346585-89346860(-)$1	275	50	68	13.2881
CACCCCGUCUCCAGAGGG	chr16:89347152-89347422(-)$1	270	97	115	11.3568
CGGGUGGAGGUGGCGGCG	chr20:31022362-31022605(+)$1	243	92	110	13.1177
GAAGAUACAGAGAAUCAU	chr1:16257502-16257777(+)$1	275	63	81	13.6980
AGCUGGACCAGGGCCAGC	chr17:27013571-27013821(+)$1	250	144	162	11.4175
UCACAGAAGUAUCCUGUA	chr10:129902542-129902784(-)$1	242	56	74	11.7664
AGCUGCAAGGAGCGCAGG	chr16:89350039-89350291(-)$1	252	210	228	11.6922
AGACCCAUAGCGAGGGCU	chr9:134350836-134351116(+)$1	280	77	95	13.1750
UUACAGGGUUUUGUUGUU	chr19:11138457-11138727(+)$1	270	195	213	10.3091
GAUCUCCAUACCUGAUGU	chr11:62287152-62287430(-)$1	278	85	103	10.0120
UGGCUCCGUUCCUGAGGU	chr1:54703734-54703993(-)$1	259	69	87	13.4526
CCCAGUACAACAUCCUGG	chr5:71490506-71490752(+)$1	246	156	174	8.9760
GCGCACGAGAAGGGUGUG	chr16:87735210-87735459(-)$1	249	137	155	11.8523
UUGUGAAUUUUGGUCGCC	chr8:94745836-94746125(-)$1	289	140	158	12.2981
GCAGGCAGAGACAGCCAG	chr11:71724492-71724737(-)$1	245	4	22	13.6980
AGAGCAGAUGGGCAAUGA	chr11:71725471-71725735(-)$1	264	108	126	9.0375
AAGAUGAUGUACGUGUCU	chr8:94748093-94748357(-)$1	264	221	239	13.3093
AGGGCAAGGAAAAUGCCU	chr17:27023909-27024175(+)$1	266	138	156	13.3093
CCUGAAAUGAUUAUUCAG	chr11:62300265-62300547(-)$1	282	129	147	11.4175
UGCUGCAGAGAGGGCAGC	chr14:65241808-65242135(-)$1	327	60	78	12.3702
GAGGAUGAGGAAAGUGCC	chr5:71492048-71492300(+)$1	252	50	68	12.2534
UGGUGGCAGAAAAGCGCU	chr8:94752623-94752867(-)$1	244	46	64	9.0709
AGCUUUGCUUGAAAGAGC	chr1:16256852-16257091(+)$1	239	217	235	12.3702

#DB
((((.........)))))	chr1:16257660-16257917(+)$1	1	79	97	8.8653
((((((.......)))))	chr5:71491431-71491669(+)$1	1	9	27	12.3702
)((((.........))))	chr5:71490576-71490832(+)$1	1	86	104	8.9760
((((((.......)))))	chr7:1131212-1131475(-)$1	1	76	94	11.8523
((..((.......))..)	chr17:27008802-27009067(+)$1	1	93	111	12.2470
((((((.......)))))	chr13:108518035-108518327(-)$1	1	63	81	13.6376
((((((.......)))))	chr8:94747044-94747314(-)$1	1	223	241	13.3093
((..((.......))..)	chr19:39138284-39138537(+)$1	1	12	30	12.5037
((((.(.......).)))	chr8:94748457-94748690(-)$1	1	192	210	13.4040
((.(((.......))).)	chr8:94747774-94748010(-)$1	1	73	91	13.4526
((((((.......)))))	chr11:62294594-62294832(-)$1	1	208	226	13.7857
((((.(.......).)))	chr16:89348867-89349114(-)$1	1	205	223	12.6624
(((.((.........)).	chr16:89347792-89348081(-)$1	1	42	60	8.9301
((((((.......)))).	chr10:120801690-120801927(-)$1	1	49	67	12.3438
.((.((.......))...	chr16:89348634-89348889(-)$1	1	102	120	12.8782
((((((.......)))))	chr19:39959300-39959602(+)$1	1	185	203	13.6376
.(((((.......)))))	chr19:49376915-49377175(+)$1	1	217	235	11.4175
(...((.......))...	chr19:49377468-49377731(+)$1	1	113	131	12.6921
(.((((.......)))).	chr10:71148852-71149104(+)$1	1	149	167	12.8205
.((.((.......))...	chr16:89348751-89348973(-)$1	1	186	204	12.8782
(.((((.......)))))	chr22:36697528-36697774(-)$1	1	208	226	12.5415
((((((.......)))))	chr16:89350307-89350602(-)$1	1	33	51	12.3702
((((((.......)))))	chr16:87735153-87735409(-)$1	1	87	105	11.8523
.(((.........))).)	chr12:6691268-6691482(-)$1	1	92	110	9.8227
((((((.......)))))	chr16:89347434-89347678(-)$1	1	162	180	13.6376
(.(.((.......)).).	chr11:62297644-62297878(-)$1	1	73	91	13.1416
((((((.......)))))	chr8:94752685-94752943(-)$1	1	52	70	11.8523
..((((.......)))))	chr9:133760237-133760484(+)$1	1	164	182	12.8458
((((((.......)))))	chr11:62297228-62297547(-)$1	1	222	240	12.3702
((.((.........)).)	chr1:16255362-16255598(+)$1	1	187	205	9.4588
((((((.......)))))	chr8:144999533-144999816(-)$1	1	258	276	12.3474
((((.(.......).)))	chr11:71725390-71725668(-)$1	1	2	20	12.6493
(((.((.......)).))	chr8:94745802-94746036(-)$1	1	205	223	12.7355
((((((.......)))))	chr11:62294489-62294767(-)$1	1	143	161	13.6376
(((.((.......)))))	chr17:27005815-27006082(+)$1	1	88	106	12.7013
.(((.........))).)	chr16:89348127-89348411(-)$1	1	144	162	9.8227
..((((.......)).))	chr5:71491920-71492210(+)$1	1	178	196	12.2534
..((((.........)))	chr17:20799074-20799334(+)$1	1	86	104	9.0031
((((((.......)))))	chr16:89347358-89347609(-)$1	1	93	111	13.6376
(..(((.......)))..	chr1:16259147-16259392(+)$1	1	34	52	13.2381
((((((.......)))))	chr11:71724803-71725026(-)$1	1	12	30	13.7857
((.(((.......)))))	chr16:89346585-89346860(-)$1	1	50	68	13.2881
..((((.......).)))	chr16:89347152-89347422(-)$1	1	97	115	11.3568
(.(.((.......)).).	chr20:31022362-31022605(+)$1	1	92	110	13.1177
((.(((.......))).)	chr1:16257502-16257777(+)$1	1	63	81	13.6980
.(((((.......)))))	chr17:27013571-27013821(+)$1	1	144	162	11.4175
))((((.......)))).	chr10:129902542-129902784(-)$1	1	56	74	11.7664
..((((.......)))).	chr16:89350039-89350291(-)$1	1	210	228	11.6922
((.(((.......)))))	chr9:134350836-134351116(+)$1	1	77	95	13.1750
(.((((.......)))).	chr19:11138457-11138727(+)$1	1	195	213	10.3091
.(((.........))).)	chr11:62287152-62287430(-)$1	1	85	103	10.0120
((.(((.......))).)	chr1:54703734-54703993(-)$1	1	69	87	13.4526
)((((.........))))	chr5:71490506-71490752(+)$1	1	156	174	8.9760
((((((.......)))))	chr16:87735210-87735459(-)$1	1	137	155	11.8523
((((((.......)))).	chr8:94745836-94746125(-)$1	1	140	158	12.2981
((.(((.......))).)	chr11:71724492-71724737(-)$1	1	4	22	13.6980
((..((.........)).	chr11:71725471-71725735(-)$1	1	108	126	9.0375
((((((.......)))))	chr8:94748093-94748357(-)$1	1	221	239	13.3093
((((((.......)))))	chr17:27023909-27024175(+)$1	1	138	156	13.3093
.(((((.......)))))	chr11:62300265-62300547(-)$1	1	129	147	11.4175
((((((.......)))))	chr14:65241808-65242135(-)$1	1	60	78	12.3702
..((((.......)).))	chr5:71492048-71492300(+)$1	1	50	68	12.2534
(((((.........))))	chr8:94752623-94752867(-)$1	1	46	64	9.0709
((((((.......)))))	chr1:16256852-16257091(+)$1	1	217	235	12.3702

#PSSM
d : 0.14	f : 0.14	h : 0.07	i : 0.07	g : 0.07	! : 0.07	c : 0.07	b : 0.06	e : 0.06	: : 0.06	[ : 0.04	= : 0.03	a : 0.01	# : 0.01	$ : 0.01	F : 0.01	
f : 0.14	d : 0.12	e : 0.10	c : 0.10	i : 0.07	g : 0.07	h : 0.06	b : 0.06	[ : 0.06	! : 0.06	= : 0.03	: : 0.03	" : 0.01	# : 0.01	$ : 0.01	
d : 0.21	f : 0.12	[ : 0.10	i : 0.07	e : 0.07	h : 0.06	! : 0.06	g : 0.06	b : 0.06	c : 0.06	= : 0.03	a : 0.03	" : 0.01	
d : 0.18	c : 0.17	f : 0.10	[ : 0.10	i : 0.07	e : 0.07	h : 0.06	g : 0.06	! : 0.04	b : 0.04	= : 0.03	" : 0.01	
b : 0.21	d : 0.17	c : 0.12	f : 0.09	i : 0.07	r : 0.06	h : 0.06	e : 0.06	g : 0.04	[ : 0.04	= : 0.03	
b : 0.20	d : 0.14	r : 0.12	c : 0.10	f : 0.07	i : 0.07	h : 0.06	a : 0.06	e : 0.06	g : 0.04	= : 0.03	
p : 0.82	r : 0.17	
p : 0.82	r : 0.17	
p : 0.82	r : 0.17	
p : 0.82	r : 0.17	
p : 0.82	r : 0.17	
p : 0.82	r : 0.17	
p : 0.82	r : 0.17	
b : 0.17	c : 0.15	d : 0.14	r : 0.10	f : 0.07	i : 0.07	h : 0.06	a : 0.06	e : 0.06	g : 0.04	= : 0.03	
b : 0.18	d : 0.17	c : 0.15	f : 0.09	i : 0.07	h : 0.06	] : 0.06	e : 0.06	g : 0.04	r : 0.04	= : 0.03	
d : 0.18	c : 0.17	f : 0.12	i : 0.07	e : 0.07	] : 0.07	h : 0.06	g : 0.06	b : 0.04	2 : 0.03	= : 0.03	3 : 0.03	4 : 0.01	
d : 0.21	f : 0.14	] : 0.12	i : 0.07	e : 0.07	h : 0.06	g : 0.06	b : 0.06	2 : 0.04	= : 0.03	3 : 0.03	a : 0.03	4 : 0.01	c : 0.01	
f : 0.14	d : 0.10	e : 0.10	b : 0.09	i : 0.07	g : 0.07	] : 0.07	c : 0.07	h : 0.06	2 : 0.04	= : 0.03	3 : 0.03	: : 0.03	4 : 0.01	6 : 0.01	

#score	773.620341548741
#seq	64
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF159HMF_HNRNPC_transcript_m3_run1.txt

#BEAR
eeeeegggggggbbrrrrrrrrrbb]ggggggg22eeee	chr17:56073707-56073912(-)$1	205	97	136	21.4246
======!!ccc[bbrrrrrrrrrbb]ccc]=========	chr6:109688912-109689217(-)$1	305	70	109	18.2596
cc!!affffff[cccpppppppccc]ffffff]a22ccc	chr1:22082813-22083073(-)$1	260	171	210	17.7844
cc[ddddeeeeecccrrrrrrrrrccc]eeeee22dddd	chr22:22152855-22153112(-)$1	257	133	172	16.8748
ffffffccc[cccbbpppppppbb]ccc]ccc333ffff	chr11:65209291-65209508(+)$1	217	83	122	19.5946
eeeeeeeeee[ddddpppppppddddeeeeeccc!!eee	chr20:36699053-36699309(+)$1	256	137	176	16.4581
fffffggggggg[bbpppppppbbggggggg22ffffff	chr17:80052513-80052736(-)$1	223	102	141	19.7663
dddd####dddd[bbpppppppbbdddddddd22ddddd	chr14:21735100-21735361(-)$1	261	142	181	17.5908
ee[ccc[gggggggrrrrrrrrrggggggg]ccc]eeee	chr2:175956438-175956716(-)$1	278	80	119	18.2977
[bb!!eeeee[ddddpppppppddddeeeee4444bb]c	chr6:36564788-36565040(+)$1	252	121	160	15.9476
eeee[a!!bb[ddddpppppppdddd]bb22a]eeeeed	chr19:1272681-1272897(+)$1	216	147	186	16.1320
d[eeeeeffffffbbrrrrrrrrrbb]ffffff22eeee	chr12:133348986-133349236(-)$1	250	135	174	16.5981
cc[eeeeeccc[cccpppppppcccccc4444eeeeecc	chr1:32636776-32637000(+)$1	224	133	172	17.6406
dddd[dddd[cccrrrrrrrrrccc]dddddddd]dddd	chr4:77996929-77997146(-)$1	217	160	199	15.1514
fff[eeeee[eeeeepppppppeeeee]eeeee]fffff	chr1:33145904-33146144(+)$1	240	190	229	16.4356
####hhhhhhhh[bbpppppppbbhhhhhhhhddddccc	chr22:19390466-19390730(-)$1	264	135	174	18.6116
eeeeehhhhhhhh[bbpppppppbbhhhhhhhh22eeee	chr7:138151118-138151376(+)$1	258	138	177	18.9991
eeeeegggggggcccpppppppccc]ggggggg22eeee	chr19:33203201-33203465(+)$1	264	144	183	22.6547
eeeeegggggggcccpppppppccc]ggggggg22eeee	chr10:103569351-103569568(-)$1	217	130	169	22.6547
eeeeegggggggbbrrrrrrrrrbb]ggggggg22eeee	chr17:56073712-56073938(-)$1	226	123	162	21.4246
hffffff[eeeeebbrrrrrrrrrbb]eeeee22fffff	chr2:173461747-173461993(+)$1	246	133	172	15.4336
ddddhhhhhhhh[bbpppppppbbhhhhhhhh22ddddd	chrX:77158471-77158680(+)$1	209	99	138	20.8394
eeeeegggggggbbrrrrrrrrrbb]ggggggg22eeee	chr3:152035022-152035285(+)$1	263	133	172	21.4246
gggggggggggg[bbpppppppbbggggggg22gggggg	chr1:21070044-21070260(-)$1	216	137	176	20.7073
[ddddgggggggbbrrrrrrrrrbb]ggggggg22dddd	chr3:195801621-195801855(-)$1	234	135	174	21.0060
[ddddgggggggbbrrrrrrrrrbb]ggggggg22dddd	chr3:195792720-195792965(-)$1	245	135	174	21.0060
ddd!!==========ppppppp==========22dddd]	chr7:139048642-139048856(+)$1	214	50	89	20.6064
[ccc[iiiiiiiiiapppppppa]iiiiiiiii22cccc	chr11:34481911-34482170(+)$1	259	17	56	21.3757
eeeeeggggggg[bbpppppppbbggggggg22eeeeed	chr5:36183280-36183537(+)$1	257	136	175	21.5275
[hhhhhhhh[ccc[arrrrrrrrra]ccc]hhhhhhhh]	chr5:133707175-133707418(+)$1	243	129	168	15.3977
!bbbbgggggggbbrrrrrrrrrbb]ggggggg22bb22	chr6:33269208-33269445(-)$1	237	124	163	18.1590
eeeeegggggggbbrrrrrrrrrbb]ggggggg22eeee	chr17:56073738-56073949(-)$1	211	134	173	21.4246
eeeehhhhhhhh[bbpppppppbbhhhhhhhh]eeeee]	chr1:113641772-113642048(+)$1	276	135	174	20.3451
[ddddgggggggcccpppppppccc]ggggggg22dddd	chr10:21983905-21984168(+)$1	263	140	179	22.2361
ee==========bbrrrrrrrrrbb]==========]ee	chr1:29388002-29388258(+)$1	256	136	175	18.8824
cc!!eeeee[eeeeepppppppeeeee]eeeee333ccc	chr10:3163922-3164221(+)$1	299	180	219	17.8585
cc!!eeeee[eeeeepppppppeeeee]eeeee333ccc	chr6:17665128-17665391(-)$1	263	179	218	17.8585
ddddhhhhhhhh[bbpppppppbbhhhhhhhh22dddd2	chr7:105181496-105181782(+)$1	286	141	180	20.5411
ddddhhhhhhhh[bbpppppppbbhhhhhhhh22ddddd	chr1:1329993-1330219(-)$1	226	120	159	20.8394
[ddddgggggggbbrrrrrrrrrbb]ggggggg22dddd	chr3:195801604-195801821(-)$1	217	101	140	21.0060
==========!!cccpppppppccc22===========:	chr7:56147870-56148185(+)$1	315	132	171	18.1319
[ccc[dddd"""arrrrrrrrra333dddd]ccc]gggg	chr16:10480593-10480883(+)$1	290	197	236	14.3898
[dddd!!eeeeebbrrrrrrrrrbb]eeeee4444dddd	chr5:138649512-138649780(+)$1	268	140	179	18.0506
ddd[ccccccccc[apppppppa]ccc]ccc]ccc]ddd	chr4:71801301-71801534(+)$1	233	180	219	18.1059
ffffffccc[cccbbpppppppbb]ccc]ccc333ffff	chr11:65209257-65209478(+)$1	221	117	156	19.5946
ddddhhhhhhhh[bbpppppppbbhhhhhhhh22ddddd	chr1:1330019-1330237(-)$1	218	138	177	20.8394
fffffbb[gggggggpppppppggggggg]bb]ffffff	chr10:76987247-76987518(+)$1	271	51	90	16.7121
#eeeee!!gggggggpppppppggggggg333eeeee33	chr9:95051361-95051595(-)$1	234	33	72	18.8799
eeeeehhhhhhhh[bbpppppppbbhhhhhhhh22eeee	chr19:29024964-29025178(-)$1	214	135	174	18.9991

#otherMatches

#Seq PSSM
uggagugcaguggcgcagucucggcucacugcaaccucc	chr17:56073707-56073912(-)$1	205	97	136	21.4246
AUAGAGCUAAAUUGAUUUAAUUACACUUUCCUUUGUACU	chr6:109688912-109689217(-)$1	305	70	109	18.2596
uccugggcugaagcgauucuccugccucagccucuugag	chr1:22082813-22083073(-)$1	260	171	210	17.7844
gcagagugcaguagcacaaucucagcucacugcaagcuc	chr22:22152855-22153112(-)$1	257	133	172	16.8748
GAGGGUGUGAGGCAGUCUUGCUCUAGCCCCACCAUGCCC	chr11:65209291-65209508(+)$1	217	83	122	19.5946
agagugcaguagagcaaucugagcucacugccucccggg	chr20:36699053-36699309(+)$1	256	137	176	16.4581
ggagugcaguggcgcgaucucagcucacugcaagcucug	chr17:80052513-80052736(-)$1	223	102	141	19.7663
ugcaugucguggcacaaucucgguucacugcaaccuccg	chr14:21735100-21735361(-)$1	261	142	181	17.5908
AAUAUAUUUUAUCAUUUAUCAUCUGAUAAAUUGuuuuuu	chr2:175956438-175956716(-)$1	278	80	119	18.2977
ucuugcacugucacugggcuggagugcagugguacaguc	chr6:36564788-36565040(+)$1	252	121	160	15.9476
CUGAGAUCGAACGGACUGUGAAUCCGCUCUUUGUCGGAA	chr19:1272681-1272897(+)$1	216	147	186	16.1320
cuggagugcaguggcacacucuccgcucacugcaagcuc	chr12:133348986-133349236(-)$1	250	135	174	16.5981
UGAUCUGUGUAACUCUUAUCUUGGGUACUUGAGCAGACG	chr1:32636776-32637000(+)$1	224	133	172	17.6406
GGGGCAGAGCCGGUCUCACCCCCCGCCUCUCCCCGGCCC	chr4:77996929-77997146(-)$1	217	160	199	15.1514
AAUCCUUGAUAAGAGUUGCUUUUUUUUUUUAGGAGUUAG	chr1:33145904-33146144(+)$1	240	190	229	16.4356
aaaaugcaguggugcaauuacggcucacugcagccuuga	chr22:19390466-19390730(-)$1	264	135	174	18.6116
uggagugcaguggcgccaucucagcccacugcaaccucc	chr7:138151118-138151376(+)$1	258	138	177	18.9991
uggagugcaguggcccaaucucggcucacugcaaccucc	chr19:33203201-33203465(+)$1	264	144	183	22.6547
uggagugcaguggcccaaucucggcucacugcaaccucc	chr10:103569351-103569568(-)$1	217	130	169	22.6547
uggagugcaguggcgcagucucggcucacugcaaccucc	chr17:56073712-56073938(-)$1	226	123	162	21.4246
auggaguacaguggcauggucaaggcucacugcagcuuc	chr2:173461747-173461993(+)$1	246	133	172	15.4336
ggagugcaguggugcgaucuuggcucacugcaaccucug	chrX:77158471-77158680(+)$1	209	99	138	20.8394
uggagugcaguggcgcaaucuuagcucacugcaacuucc	chr3:152035022-152035285(+)$1	263	133	172	21.4246
ggagugcaguggugugaucuuggcucacugcaaacuccg	chr1:21070044-21070260(-)$1	216	137	176	20.7073
uggagugcaguggcgugauuucggcucacugcaaucucc	chr3:195801621-195801855(-)$1	234	135	174	21.0060
uggagugcaguggcgugaucucggcucacugcagccucc	chr3:195792720-195792965(-)$1	245	135	174	21.0060
AAAUUGAGGGUGUGGAUUUAGAUUACAUCCuuuuuuuuu	chr7:139048642-139048856(+)$1	214	50	89	20.6064
AGAAAGUCUCAGAGCUCAAAGUGUUUCUGAGAUAAUUCA	chr11:34481911-34482170(+)$1	259	17	56	21.3757
ggagugcaguggugcgaucucggcucacugcaagcuccg	chr5:36183280-36183537(+)$1	257	136	175	21.5275
AGGAGGCUCAUGCGGGAUUUCAAGCGGUAAGGGCCUUCA	chr5:133707175-133707418(+)$1	243	129	168	15.3977
ugcagugcaguggcaugaucuuggcuuacugcaaccucc	chr6:33269208-33269445(-)$1	237	124	163	18.1590
uggagugcaguggcgcagucucggcucacugcaaccucc	chr17:56073738-56073949(-)$1	211	134	173	21.4246
ggagugcuguggugcaaucacagcucacagcagcuucaa	chr1:113641772-113642048(+)$1	276	135	174	20.3451
uggagugcaguggucugaucuuggcucacugcaaccucu	chr10:21983905-21984168(+)$1	263	140	179	22.2361
uggagugcaguggcucaaucacugcuuacugcacucuca	chr1:29388002-29388258(+)$1	256	136	175	18.8824
ucccaggcuuaggugauccucccaccucagccuccugag	chr10:3163922-3164221(+)$1	299	180	219	17.8585
ucccggguucaagugauucuccugcuucagccccccgag	chr6:17665128-17665391(-)$1	263	179	218	17.8585
ggagugcgguggugcagucucagcucacugcaaccuccu	chr7:105181496-105181782(+)$1	286	141	180	20.5411
ggagugcaguggugcaaucuuggcucacugcaaccucug	chr1:1329993-1330219(-)$1	226	120	159	20.8394
uggagugcaguggcgugauuucggcucacugcaaucucc	chr3:195801604-195801821(-)$1	217	101	140	21.0060
ggcuagagugcacuggugaucacggcucacucuagccuu	chr7:56147870-56148185(+)$1	315	132	171	18.1319
AAAAUGAAGUUUCUAACCACGUGUUCCUUCCUUUACGAC	chr16:10480593-10480883(+)$1	290	197	236	14.3898
uggagugcaguggcgcagucucagcucacuggaaucucc	chr5:138649512-138649780(+)$1	268	140	179	18.0506
uccugagcuuaggcgauucucccaccucaagccucugga	chr4:71801301-71801534(+)$1	233	180	219	18.1059
GAGGGUGUGAGGCAGUCUUGCUCUAGCCCCACCAUGCCC	chr11:65209257-65209478(+)$1	221	117	156	19.5946
ggagugcaguggugcaaucuuggcucacugcaaccucug	chr1:1330019-1330237(-)$1	218	138	177	20.8394
GUUUCAUGGUUUAACUCUUACUGUUAAAUAAUAGGAAuu	chr10:76987247-76987518(+)$1	271	51	90	16.7121
AAGUUCCCUUAAGAAUAGUCAUUUCUuagacugaauucc	chr9:95051361-95051595(-)$1	234	33	72	18.8799
uggagugcaguggugcaaucuuggcucacugcaaccucc	chr19:29024964-29025178(-)$1	214	135	174	18.9991

#DB
((((((((((((((.........)).)))))))..))))	chr17:56073707-56073912(-)$1	1	97	136	21.4246
((((((..(((.((.........)).))).)))))))))	chr6:109688912-109689217(-)$1	1	70	109	18.2596
((..(((((((.(((.......))).)))))).)..)))	chr1:22082813-22083073(-)$1	1	171	210	17.7844
((.((((((((((((.........))).)))))..))))	chr22:22152855-22153112(-)$1	1	133	172	16.8748
(((((((((.(((((.......)).))).)))...))))	chr11:65209291-65209508(+)$1	1	83	122	19.5946
)))))(((((.((((.......)))))))))(((..(((	chr20:36699053-36699309(+)$1	1	137	176	16.4581
((((((((((((.((.......)))))))))..))))))	chr17:80052513-80052736(-)$1	1	102	141	19.7663
((((....((((.((.......))))))))))..)))))	chr14:21735100-21735361(-)$1	1	142	181	17.5908
((.(((.(((((((.........))))))).))).))))	chr2:175956438-175956716(-)$1	1	80	119	18.2977
.((..(((((.((((.......)))))))))....)).)	chr6:36564788-36565040(+)$1	1	121	160	15.9476
((((.(..((.((((.......)))).))..).)))))(	chr19:1272681-1272897(+)$1	1	147	186	16.1320
(.(((((((((((((.........)).))))))..))))	chr12:133348986-133349236(-)$1	1	135	174	16.5981
((.((((((((.(((.......))))))....)))))))	chr1:32636776-32637000(+)$1	1	133	172	17.6406
((((.((((.(((.........))).)))))))).))))	chr4:77996929-77997146(-)$1	1	160	199	15.1514
(((.(((((.(((((.......))))).))))).)))))	chr1:33145904-33146144(+)$1	1	190	229	16.4356
....((((((((.((.......)))))))))))))))))	chr22:19390466-19390730(-)$1	1	135	174	18.6116
(((((((((((((.((.......))))))))))..))))	chr7:138151118-138151376(+)$1	1	138	177	18.9991
(((((((((((((((.......))).)))))))..))))	chr19:33203201-33203465(+)$1	1	144	183	22.6547
(((((((((((((((.......))).)))))))..))))	chr10:103569351-103569568(-)$1	1	130	169	22.6547
((((((((((((((.........)).)))))))..))))	chr17:56073712-56073938(-)$1	1	123	162	21.4246
(((((((.(((((((.........)).)))))..)))))	chr2:173461747-173461993(+)$1	1	133	172	15.4336
((((((((((((.((.......))))))))))..)))))	chrX:77158471-77158680(+)$1	1	99	138	20.8394
((((((((((((((.........)).)))))))..))))	chr3:152035022-152035285(+)$1	1	133	172	21.4246
((((((((((((.((.......)))))))))..))))))	chr1:21070044-21070260(-)$1	1	137	176	20.7073
.(((((((((((((.........)).)))))))..))))	chr3:195801621-195801855(-)$1	1	135	174	21.0060
.(((((((((((((.........)).)))))))..))))	chr3:195792720-195792965(-)$1	1	135	174	21.0060
(((..((((((((((.......))))))))))..)))).	chr7:139048642-139048856(+)$1	1	50	89	20.6064
.(((.((((((((((.......).)))))))))..))))	chr11:34481911-34482170(+)$1	1	17	56	21.3757
((((((((((((.((.......)))))))))..))))))	chr5:36183280-36183537(+)$1	1	136	175	21.5275
.((((((((.(((.(.........).))).)))))))).	chr5:133707175-133707418(+)$1	1	129	168	15.3977
.(((((((((((((.........)).)))))))..))..	chr6:33269208-33269445(-)$1	1	124	163	18.1590
((((((((((((((.........)).)))))))..))))	chr17:56073738-56073949(-)$1	1	134	173	21.4246
((((((((((((.((.......)))))))))).))))).	chr1:113641772-113642048(+)$1	1	135	174	20.3451
.((((((((((((((.......))).)))))))..))))	chr10:21983905-21984168(+)$1	1	140	179	22.2361
((((((((((((((.........)).)))))))))).))	chr1:29388002-29388258(+)$1	1	136	175	18.8824
((..(((((.(((((.......))))).)))))...)))	chr10:3163922-3164221(+)$1	1	180	219	17.8585
((..(((((.(((((.......))))).)))))...)))	chr6:17665128-17665391(-)$1	1	179	218	17.8585
((((((((((((.((.......))))))))))..)))).	chr7:105181496-105181782(+)$1	1	141	180	20.5411
((((((((((((.((.......))))))))))..)))))	chr1:1329993-1330219(-)$1	1	120	159	20.8394
.(((((((((((((.........)).)))))))..))))	chr3:195801604-195801821(-)$1	1	101	140	21.0060
((((((((((..(((.......)))..))))))))))).	chr7:56147870-56148185(+)$1	1	132	171	18.1319
.(((.((((...(.........)...)))).))).))))	chr16:10480593-10480883(+)$1	1	197	236	14.3898
.((((..(((((((.........)).)))))....))))	chr5:138649512-138649780(+)$1	1	140	179	18.0506
(((.(((((((((.(.......).))).))).))).)))	chr4:71801301-71801534(+)$1	1	180	219	18.1059
(((((((((.(((((.......)).))).)))...))))	chr11:65209257-65209478(+)$1	1	117	156	19.5946
((((((((((((.((.......))))))))))..)))))	chr1:1330019-1330237(-)$1	1	138	177	20.8394
(((((((.(((((((.......))))))).)).))))))	chr10:76987247-76987518(+)$1	1	51	90	16.7121
.(((((..(((((((.......)))))))...)))))..	chr9:95051361-95051595(-)$1	1	33	72	18.8799
(((((((((((((.((.......))))))))))..))))	chr19:29024964-29025178(-)$1	1	135	174	18.9991

#PSSM
e : 0.28	d : 0.18	[ : 0.18	c : 0.10	f : 0.10	= : 0.04	# : 0.04	h : 0.02	g : 0.02	! : 0.02	
e : 0.30	d : 0.26	c : 0.14	f : 0.12	= : 0.04	b : 0.04	[ : 0.02	# : 0.02	g : 0.02	h : 0.02	
e : 0.28	d : 0.26	f : 0.12	= : 0.06	! : 0.06	[ : 0.06	b : 0.04	c : 0.04	# : 0.02	g : 0.02	h : 0.02	
e : 0.30	d : 0.24	! : 0.10	f : 0.10	= : 0.06	c : 0.06	[ : 0.04	# : 0.02	g : 0.02	h : 0.02	b : 0.02	
e : 0.32	h : 0.14	d : 0.12	f : 0.10	[ : 0.08	= : 0.06	c : 0.04	! : 0.04	a : 0.02	# : 0.02	g : 0.02	b : 0.02	
g : 0.28	h : 0.18	e : 0.16	= : 0.08	f : 0.08	d : 0.06	c : 0.04	# : 0.02	a : 0.02	i : 0.02	! : 0.02	b : 0.02	
g : 0.28	h : 0.18	e : 0.14	! : 0.08	d : 0.06	c : 0.06	= : 0.06	f : 0.04	# : 0.02	[ : 0.02	i : 0.02	b : 0.02	
g : 0.30	h : 0.18	e : 0.16	! : 0.06	c : 0.06	= : 0.06	f : 0.04	d : 0.04	[ : 0.04	# : 0.02	i : 0.02	
g : 0.34	h : 0.18	e : 0.16	c : 0.10	d : 0.06	= : 0.06	f : 0.04	b : 0.02	i : 0.02	
g : 0.34	h : 0.16	[ : 0.14	e : 0.10	c : 0.06	= : 0.06	f : 0.04	d : 0.02	b : 0.02	i : 0.02	" : 0.02	
g : 0.34	h : 0.16	c : 0.14	e : 0.12	[ : 0.06	f : 0.04	= : 0.04	d : 0.02	i : 0.02	! : 0.02	" : 0.02	
g : 0.34	h : 0.16	e : 0.12	c : 0.10	d : 0.08	[ : 0.06	= : 0.04	f : 0.02	i : 0.02	! : 0.02	" : 0.02	
c : 0.24	b : 0.22	[ : 0.20	e : 0.08	d : 0.06	g : 0.06	h : 0.04	f : 0.02	= : 0.02	i : 0.02	a : 0.02	
b : 0.51	c : 0.14	[ : 0.08	d : 0.06	g : 0.06	e : 0.06	r : 0.04	= : 0.02	i : 0.02	
b : 0.32	r : 0.28	c : 0.14	d : 0.06	e : 0.06	a : 0.06	g : 0.04	= : 0.02	
p : 0.59	r : 0.36	b : 0.04	
p : 0.63	r : 0.36	
p : 0.63	r : 0.36	
p : 0.63	r : 0.36	
p : 0.63	r : 0.36	
p : 0.63	r : 0.36	
p : 0.63	r : 0.36	
r : 0.32	b : 0.24	c : 0.14	d : 0.06	e : 0.06	a : 0.06	p : 0.04	g : 0.04	= : 0.02	
b : 0.51	c : 0.14	r : 0.08	d : 0.06	g : 0.06	e : 0.06	] : 0.04	= : 0.02	3 : 0.02	
b : 0.30	c : 0.18	g : 0.12	h : 0.12	d : 0.08	e : 0.06	] : 0.04	= : 0.02	i : 0.02	a : 0.02	3 : 0.02	
] : 0.34	h : 0.16	g : 0.12	c : 0.10	d : 0.08	e : 0.06	b : 0.04	= : 0.02	i : 0.02	2 : 0.02	3 : 0.02	
g : 0.34	h : 0.16	c : 0.14	e : 0.12	d : 0.06	] : 0.06	= : 0.04	f : 0.02	i : 0.02	2 : 0.02	
g : 0.34	h : 0.16	c : 0.10	] : 0.10	e : 0.08	d : 0.06	= : 0.06	f : 0.04	b : 0.02	i : 0.02	
g : 0.34	e : 0.16	h : 0.16	c : 0.06	d : 0.06	= : 0.06	f : 0.04	] : 0.04	b : 0.02	4 : 0.02	i : 0.02	
g : 0.30	e : 0.16	h : 0.16	] : 0.06	c : 0.06	d : 0.06	= : 0.06	f : 0.04	2 : 0.02	4 : 0.02	i : 0.02	3 : 0.02	
g : 0.28	h : 0.18	e : 0.16	= : 0.08	c : 0.06	f : 0.04	d : 0.04	] : 0.04	2 : 0.02	4 : 0.02	i : 0.02	b : 0.02	3 : 0.02	
g : 0.22	h : 0.18	e : 0.10	c : 0.10	= : 0.08	2 : 0.06	4 : 0.06	f : 0.04	d : 0.04	a : 0.02	i : 0.02	] : 0.02	b : 0.02	3 : 0.02	
g : 0.22	2 : 0.20	e : 0.12	] : 0.08	c : 0.08	= : 0.06	h : 0.06	3 : 0.04	4 : 0.04	d : 0.04	f : 0.02	i : 0.02	
2 : 0.46	e : 0.10	3 : 0.08	c : 0.08	= : 0.06	f : 0.04	4 : 0.04	d : 0.04	a : 0.02	] : 0.02	g : 0.02	h : 0.02	
2 : 0.34	d : 0.14	e : 0.10	3 : 0.08	f : 0.08	= : 0.06	] : 0.06	4 : 0.04	! : 0.02	g : 0.02	h : 0.02	c : 0.02	
e : 0.30	d : 0.28	f : 0.12	= : 0.06	b : 0.04	g : 0.04	3 : 0.04	2 : 0.02	! : 0.02	c : 0.02	h : 0.02	] : 0.02	
e : 0.32	d : 0.28	f : 0.12	c : 0.10	= : 0.04	b : 0.04	g : 0.04	h : 0.02	] : 0.02	
e : 0.30	d : 0.28	c : 0.12	f : 0.12	= : 0.04	g : 0.04	] : 0.02	h : 0.02	2 : 0.02	3 : 0.02	
d : 0.28	e : 0.24	c : 0.14	f : 0.12	] : 0.06	g : 0.04	2 : 0.04	= : 0.02	: : 0.02	3 : 0.02	

#score	930.4816683022201
#seq	49
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_CDS_m2_run1.txt

#BEAR
ccwwwwwwwwwwwwwwccc	chr12:56498355-56498640(+)$1	285	215	234	16.3310
!bbuuuuuuuuuuuubb22	chr11:62291035-62291272(-)$1	237	23	42	15.5941
iwwwwwwwwwwwwwwiiii	chr6:31797494-31797751(+)$1	257	191	210	16.0722
wwwwwwwwwwwwweeeee:	chr15:66786570-66786885(-)$1	315	6	25	12.3268
eeeeesssssssssseeee	chr14:102506527-102506754(+)$1	227	26	45	11.3303
fffuuuuuuuuuuuuffff	chr6:160204917-160205188(-)$1	271	59	78	16.8985
fffffssssssssssffff	chr1:155030375-155030652(+)$1	277	99	118	11.7368
eeeeesssssssssseeee	chr11:5275551-5275802(-)$1	251	95	114	11.3303
yyyyyyyyyyyyyyyffff	chr5:143543574-143543830(-)$1	256	199	218	14.3463
ddddwwwwwwwwwwwwwwd	chr1:228336383-228336642(+)$1	259	201	220	15.0883
:ccctttttttttttccc:	chr11:108593940-108594258(+)$1	318	12	31	14.8656
#ccctttttttttttccc3	chrX:47062956-47063197(+)$1	241	78	97	16.8417
eeeesssssssssseeeee	chr21:45223344-45223628(+)$1	284	106	125	11.4177
yyyyyyyyyyyyyyyffff	chr4:13603898-13604173(-)$1	275	7	26	14.3463
ffffffrrrrrrrrrffff	chr20:62626226-62626447(+)$1	221	56	75	9.6221
eeeevvvvvvvvvvvvvee	chr5:140699405-140699653(-)$1	248	45	64	16.0046
!!bb^^^^^^^^^^^^^^^	chr6:32945977-32946268(+)$1	291	94	113	10.8084
gggg^^^^^^^^^^^^^^^	chr17:8417096-8417313(-)$1	217	39	58	11.0720
ggggtttttttttttgggg	chr1:39896276-39896531(+)$1	255	91	110	16.7027
ggggrrrrrrrrrgggggg	chr1:27106041-27106263(+)$1	222	100	119	9.9067
ddddvvvvvvvvvvvvvdd	chr2:71653837-71654099(+)$1	262	48	67	15.3346
ggggrrrrrrrrrgggggg	chr12:49666495-49666738(+)$1	243	222	241	9.9067
======rrrrrrrrr====	chr9:139904710-139904981(-)$1	271	66	85	9.8314
ffffssssssssssfffff	chr11:47772367-47772618(-)$1	251	11	30	11.8319
ggggssssssssssggggg	chr6:31922229-31922514(-)$1	285	258	277	11.8131
yyyyyyyyyyyyyyybb]b	chr19:58905764-58906012(+)$1	248	136	155	13.5479
ccc^^^^^^^^^^^^^^^^	chr6:56966557-56966808(+)$1	251	173	192	11.2346
[cccvvvvvvvvvvvvvcc	chr5:134116720-134116959(+)$1	239	198	217	16.5663
ggggrrrrrrrrrgggggg	chr12:49666689-49666938(+)$1	249	28	47	9.9067
f[bbrrrrrrrrrbbffff	chr3:121435665-121435913(-)$1	248	189	208	9.6936
ffffrrrrrrrrrffffff	chr19:18700036-18700326(+)$1	290	138	157	10.0184
fffffssssssssssffff	chr15:90744740-90745005(+)$1	265	207	226	11.7368
iivvvvvvvvvvvvviiii	chr11:118344461-118344743(+)$1	282	192	211	16.3767
[cccrrrrrrrrrccc]af	chr11:62299314-62299624(-)$1	310	186	205	10.5644
=wwwwwwwwwwwwww====	chr11:62300890-62301145(-)$1	255	56	75	16.2884
eeeettttttttttteeee	chr21:35469534-35469786(+)$1	252	149	168	16.2571
"cccssssssssssccc]f	chr13:113209127-113209425(-)$1	298	212	231	12.1511
ffffyyyyyyyyyyyyyyy	chr11:62284190-62284535(-)$1	345	231	250	13.6308
yyyyyyyyyyyyyyydddd	chr12:112685721-112686050(-)$1	329	273	292	13.5584
cccarrrrrrrrra]ccc]	chr17:57774859-57775239(-)$1	380	358	377	10.6207
gggg^^^^^^^^^^^^^^^	chr14:75265156-75265420(+)$1	264	14	33	11.0720
cc[bbrrrrrrrrrbb]cc	chr22:20800697-20800981(-)$1	284	47	66	9.4281
gggvvvvvvvvvvvvvggg	chr11:62285879-62286131(-)$1	252	194	213	16.6153
$$bbtttttttttttbb55	chr8:22267339-22267630(+)$1	291	225	244	13.8408
ggggrrrrrrrrrgggggg	chr12:49666616-49666866(+)$1	250	101	120	9.9067
!eeeeerrrrrrrrreeee	chr2:17902325-17902604(-)$1	279	127	146	9.3760
fffftttttttttttffff	chr2:178082455-178082673(+)$1	218	178	197	16.6489
eeeewwwwwwwwwwwwwwe	chr1:12337783-12338029(+)$1	246	212	231	15.6244
eeeeesssssssssseeee	chr12:98994927-98995159(+)$1	232	164	183	11.3303
eevvvvvvvvvvvvveeee	chr1:183596534-183596802(-)$1	268	28	47	16.1859
ffvvvvvvvvvvvvvffff	chr11:62285221-62285458(-)$1	237	185	204	16.5122
[ccctttttttttttccca	chr16:72821493-72821757(-)$1	264	23	42	16.9436
[cccrrrrrrrrrcccfff	chr11:62284725-62285028(-)$1	303	148	167	10.7018
ddddtttttttttttdddd	chr7:2409013-2409267(+)$1	254	68	87	15.3370
[cccuuuuuuuuuuuuccc	chr5:140698988-140699246(-)$1	258	48	67	16.9674
fffffrrrrrrrrrfffff	chr2:153520551-153520772(-)$1	221	31	50	9.9919

#otherMatches

#Seq PSSM
UCGUGACCAAGUAUAAGAU	chr12:56498355-56498640(+)$1	285	215	234	16.3310
ACAUUGACUUAAACUUGAA	chr11:62291035-62291272(-)$1	237	23	42	15.5941
GGUGGACUGUUGGGACUCA	chr6:31797494-31797751(+)$1	257	191	210	16.0722
UGUAGACAAUGAAGCAUCA	chr15:66786570-66786885(-)$1	315	6	25	12.3268
CCUGUUGCACCCUUCGCAG	chr14:102506527-102506754(+)$1	227	26	45	11.3303
GUAUUAACUUAAUCUUAUG	chr6:160204917-160205188(-)$1	271	59	78	16.8985
GGCGUUGUGCCUCCUAUGC	chr1:155030375-155030652(+)$1	277	99	118	11.7368
GACAGCUUUGGCAACCUGU	chr11:5275551-5275802(-)$1	251	95	114	11.3303
CCUUUAAAUUUUAAAUGUU	chr5:143543574-143543830(-)$1	256	199	218	14.3463
GUCCCUAUCUCUCACUCUG	chr1:228336383-228336642(+)$1	259	201	220	15.0883
ACUGGUAAUgaagaacagg	chr11:108593940-108594258(+)$1	318	12	31	14.8656
GGACACCAUUGAGAAGUCA	chrX:47062956-47063197(+)$1	241	78	97	16.8417
GGGUGUAGGGGCCGACCCC	chr21:45223344-45223628(+)$1	284	106	125	11.4177
AAACUGUCAAACUUAAGCA	chr4:13603898-13604173(-)$1	275	7	26	14.3463
AGUCACAGAAGAAGAGUGG	chr20:62626226-62626447(+)$1	221	56	75	9.6221
AGUAAAAGCAAAGAUGAUG	chr5:140699405-140699653(-)$1	248	45	64	16.0046
AACCUAAGAAGUCCAAGAA	chr6:32945977-32946268(+)$1	291	94	113	10.8084
AUGACAACAGCCAUUCAAG	chr17:8417096-8417313(-)$1	217	39	58	11.0720
CCUUAGGAAUUAAAGAAGG	chr1:39896276-39896531(+)$1	255	91	110	16.7027
GGUCUAGCACCUUGACCGA	chr1:27106041-27106263(+)$1	222	100	119	9.9067
ACUAAAUAUGGAAGAAAUG	chr2:71653837-71654099(+)$1	262	48	67	15.3346
UUGGCAUUAAUUACCAGCC	chr12:49666495-49666738(+)$1	243	222	241	9.9067
GCUCUGGAGGUGGGGCAGG	chr9:139904710-139904981(-)$1	271	66	85	9.8314
UAAGUAUAUAUUUUUUUAG	chr11:47772367-47772618(-)$1	251	11	30	11.8319
GGUCUAUGUCUUGUGACUA	chr6:31922229-31922514(-)$1	285	258	277	11.8131
CCUUCCGGAACAUUAAGAC	chr19:58905764-58906012(+)$1	248	136	155	13.5479
AUCACAAAUACUAUAAUCA	chr6:56966557-56966808(+)$1	251	173	192	11.2346
GACCAGGAUGCCAUGGAGG	chr5:134116720-134116959(+)$1	239	198	217	16.5663
UUGGCAUUAAUUACCAGCC	chr12:49666689-49666938(+)$1	249	28	47	9.9067
CCUCUCAUAUUUUGAGUCU	chr3:121435665-121435913(-)$1	248	189	208	9.6936
CCAGUCCUCCCCUCUGGUG	chr19:18700036-18700326(+)$1	290	138	157	10.0184
CCGGAUCAGCCUGCCUCUG	chr15:90744740-90745005(+)$1	265	207	226	11.7368
CCAAAAAAGCAACAGGGCG	chr11:118344461-118344743(+)$1	282	192	211	16.3767
GAUCUCCAUGCCUGAUGUG	chr11:62299314-62299624(-)$1	310	186	205	10.5644
UGGGUGGCAGAGGAGGGGU	chr11:62300890-62301145(-)$1	255	56	75	16.2884
AGACAAUACUGACUGGUCU	chr21:35469534-35469786(+)$1	252	149	168	16.2571
AGUAGAAGGAAAGGUACAG	chr13:113209127-113209425(-)$1	298	212	231	12.1511
UGUCCUCCUCUUCUAGCAA	chr11:62284190-62284535(-)$1	345	231	250	13.6308
AAAAUAAUGUCAUUUCCUA	chr12:112685721-112686050(-)$1	329	273	292	13.5584
AGGCUCUCAAACUGUCCUA	chr17:57774859-57775239(-)$1	380	358	377	10.6207
UCGGGAUAAGAUGAUGGGU	chr14:75265156-75265420(+)$1	264	14	33	11.0720
GGGGAAGAUGUAUAUCACC	chr22:20800697-20800981(-)$1	284	47	66	9.4281
UCUGUUCCCAGCAUGAAGG	chr11:62285879-62286131(-)$1	252	194	213	16.6153
UUACUUCAUCGCCCUGUCC	chr8:22267339-22267630(+)$1	291	225	244	13.8408
UUGGCAUUAAUUACCAGCC	chr12:49666616-49666866(+)$1	250	101	120	9.9067
AGUAUUGCUGGUUUAAGUA	chr2:17902325-17902604(-)$1	279	127	146	9.3760
ACACAUAUUUGGAAAGUGU	chr2:178082455-178082673(+)$1	218	178	197	16.6489
CGGAUGUUUUGCCCACCUU	chr1:12337783-12338029(+)$1	246	212	231	15.6244
CAACAGUUUUGGAUAUGUU	chr12:98994927-98995159(+)$1	232	164	183	11.3303
ACCUUUUAUUAUUCUGUCA	chr1:183596534-183596802(-)$1	268	28	47	16.1859
CUGAUAUCAGUGUGAAGGG	chr11:62285221-62285458(-)$1	237	185	204	16.5122
AGGAGCCACCUGAAGUCCC	chr16:72821493-72821757(-)$1	264	23	42	16.9436
GCCGUGAGCUGGUUGGCAG	chr11:62284725-62285028(-)$1	303	148	167	10.7018
AACAUUUUAUUUUCCUGUU	chr7:2409013-2409267(+)$1	254	68	87	15.3370
GCCUCUAAAGAAUGUCAGG	chr5:140698988-140699246(-)$1	258	48	67	16.9674
AUGGACAACUGCAUUCUAU	chr2:153520551-153520772(-)$1	221	31	50	9.9919

#DB
((..............)))	chr12:56498355-56498640(+)$1	1	215	234	16.3310
.((............))..	chr11:62291035-62291272(-)$1	1	23	42	15.5941
(..............))))	chr6:31797494-31797751(+)$1	1	191	210	16.0722
.............))))).	chr15:66786570-66786885(-)$1	1	6	25	12.3268
(((((..........))))	chr14:102506527-102506754(+)$1	1	26	45	11.3303
(((............))))	chr6:160204917-160205188(-)$1	1	59	78	16.8985
(((((..........))))	chr1:155030375-155030652(+)$1	1	99	118	11.7368
(((((..........))))	chr11:5275551-5275802(-)$1	1	95	114	11.3303
...............))))	chr5:143543574-143543830(-)$1	1	199	218	14.3463
((((..............)	chr1:228336383-228336642(+)$1	1	201	220	15.0883
.(((...........))).	chr11:108593940-108594258(+)$1	1	12	31	14.8656
.(((...........))).	chrX:47062956-47063197(+)$1	1	78	97	16.8417
((((..........)))))	chr21:45223344-45223628(+)$1	1	106	125	11.4177
...............))))	chr4:13603898-13604173(-)$1	1	7	26	14.3463
((((((.........))))	chr20:62626226-62626447(+)$1	1	56	75	9.6221
((((.............))	chr5:140699405-140699653(-)$1	1	45	64	16.0046
..((...............	chr6:32945977-32946268(+)$1	1	94	113	10.8084
((((...............	chr17:8417096-8417313(-)$1	1	39	58	11.0720
((((...........))))	chr1:39896276-39896531(+)$1	1	91	110	16.7027
((((.........))))))	chr1:27106041-27106263(+)$1	1	100	119	9.9067
((((.............))	chr2:71653837-71654099(+)$1	1	48	67	15.3346
((((.........))))))	chr12:49666495-49666738(+)$1	1	222	241	9.9067
((((((.........))))	chr9:139904710-139904981(-)$1	1	66	85	9.8314
((((..........)))))	chr11:47772367-47772618(-)$1	1	11	30	11.8319
((((..........)))))	chr6:31922229-31922514(-)$1	1	258	277	11.8131
...............)).)	chr19:58905764-58906012(+)$1	1	136	155	13.5479
(((................	chr6:56966557-56966808(+)$1	1	173	192	11.2346
.(((.............))	chr5:134116720-134116959(+)$1	1	198	217	16.5663
((((.........))))))	chr12:49666689-49666938(+)$1	1	28	47	9.9067
(.((.........))))))	chr3:121435665-121435913(-)$1	1	189	208	9.6936
((((.........))))))	chr19:18700036-18700326(+)$1	1	138	157	10.0184
(((((..........))))	chr15:90744740-90745005(+)$1	1	207	226	11.7368
((.............))))	chr11:118344461-118344743(+)$1	1	192	211	16.3767
.(((.........))).))	chr11:62299314-62299624(-)$1	1	186	205	10.5644
(..............))))	chr11:62300890-62301145(-)$1	1	56	75	16.2884
((((...........))))	chr21:35469534-35469786(+)$1	1	149	168	16.2571
.(((..........))).)	chr13:113209127-113209425(-)$1	1	212	231	12.1511
((((...............	chr11:62284190-62284535(-)$1	1	231	250	13.6308
...............))))	chr12:112685721-112686050(-)$1	1	273	292	13.5584
((((.........).))).	chr17:57774859-57775239(-)$1	1	358	377	10.6207
((((...............	chr14:75265156-75265420(+)$1	1	14	33	11.0720
((.((.........)).))	chr22:20800697-20800981(-)$1	1	47	66	9.4281
(((.............)))	chr11:62285879-62286131(-)$1	1	194	213	16.6153
..((...........))..	chr8:22267339-22267630(+)$1	1	225	244	13.8408
((((.........))))))	chr12:49666616-49666866(+)$1	1	101	120	9.9067
.(((((.........))))	chr2:17902325-17902604(-)$1	1	127	146	9.3760
((((...........))))	chr2:178082455-178082673(+)$1	1	178	197	16.6489
((((..............)	chr1:12337783-12338029(+)$1	1	212	231	15.6244
(((((..........))))	chr12:98994927-98995159(+)$1	1	164	183	11.3303
((.............))))	chr1:183596534-183596802(-)$1	1	28	47	16.1859
((.............))))	chr11:62285221-62285458(-)$1	1	185	204	16.5122
.(((...........))))	chr16:72821493-72821757(-)$1	1	23	42	16.9436
.(((.........))))))	chr11:62284725-62285028(-)$1	1	148	167	10.7018
((((...........))))	chr7:2409013-2409267(+)$1	1	68	87	15.3370
.(((............)))	chr5:140698988-140699246(-)$1	1	48	67	16.9674
(((((.........)))))	chr2:153520551-153520772(-)$1	1	31	50	9.9919

#PSSM
f : 0.19	g : 0.16	e : 0.14	[ : 0.08	c : 0.07	y : 0.07	! : 0.05	d : 0.05	i : 0.03	= : 0.03	w : 0.01	: : 0.01	# : 0.01	" : 0.01	$ : 0.01	
c : 0.21	f : 0.17	e : 0.16	g : 0.16	y : 0.07	w : 0.05	d : 0.05	b : 0.01	! : 0.01	= : 0.01	[ : 0.01	i : 0.01	$ : 0.01	
c : 0.17	f : 0.16	g : 0.16	e : 0.14	w : 0.07	b : 0.07	y : 0.07	d : 0.05	v : 0.05	= : 0.01	[ : 0.01	
e : 0.14	f : 0.14	c : 0.14	g : 0.14	w : 0.07	y : 0.07	b : 0.07	v : 0.07	d : 0.05	u : 0.03	= : 0.01	^ : 0.01	a : 0.01	
r : 0.16	t : 0.14	v : 0.12	w : 0.10	y : 0.08	e : 0.07	f : 0.07	s : 0.07	^ : 0.07	u : 0.05	= : 0.01	b : 0.01	
r : 0.19	s : 0.16	t : 0.14	v : 0.12	w : 0.10	y : 0.08	^ : 0.07	u : 0.05	f : 0.01	= : 0.01	e : 0.01	
r : 0.24	s : 0.16	t : 0.14	v : 0.12	w : 0.10	y : 0.08	^ : 0.07	u : 0.05	
r : 0.24	s : 0.16	t : 0.14	v : 0.12	w : 0.10	y : 0.08	^ : 0.07	u : 0.05	
r : 0.24	s : 0.16	t : 0.14	v : 0.12	w : 0.10	y : 0.08	^ : 0.07	u : 0.05	
r : 0.24	s : 0.16	t : 0.14	v : 0.12	w : 0.10	y : 0.08	^ : 0.07	u : 0.05	
r : 0.24	s : 0.16	t : 0.14	v : 0.12	w : 0.10	y : 0.08	^ : 0.07	u : 0.05	
r : 0.24	s : 0.16	t : 0.14	v : 0.12	w : 0.10	y : 0.08	^ : 0.07	u : 0.05	
r : 0.24	s : 0.16	t : 0.14	v : 0.12	w : 0.10	y : 0.08	^ : 0.07	u : 0.05	
s : 0.16	t : 0.14	v : 0.12	w : 0.08	y : 0.08	r : 0.08	^ : 0.07	g : 0.07	u : 0.05	c : 0.03	e : 0.01	b : 0.01	f : 0.01	a : 0.01	
t : 0.14	v : 0.12	w : 0.08	s : 0.08	y : 0.08	g : 0.08	^ : 0.07	u : 0.05	r : 0.05	f : 0.05	c : 0.05	e : 0.03	b : 0.03	] : 0.01	
f : 0.21	e : 0.14	c : 0.12	g : 0.10	b : 0.07	v : 0.07	^ : 0.07	w : 0.05	i : 0.03	= : 0.03	d : 0.03	y : 0.01	u : 0.01	
f : 0.23	e : 0.14	c : 0.12	g : 0.12	^ : 0.07	b : 0.05	v : 0.05	i : 0.03	w : 0.03	= : 0.03	] : 0.03	d : 0.03	y : 0.01	
f : 0.23	e : 0.16	c : 0.14	g : 0.12	^ : 0.07	d : 0.05	i : 0.03	w : 0.03	= : 0.03	] : 0.03	2 : 0.01	a : 0.01	y : 0.01	5 : 0.01	
f : 0.26	e : 0.16	g : 0.12	c : 0.07	d : 0.07	^ : 0.07	i : 0.03	: : 0.03	= : 0.03	2 : 0.01	3 : 0.01	b : 0.01	y : 0.01	] : 0.01	5 : 0.01	a : 0.01	

#score	739.997124409246
#seq	56
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788LMZ_STAU2_transcript_m1_run2.txt

#BEAR
ff[bb[ggggggg####bbmmmmbbggggggg333bb]ff	chr1:2162575-2162837(+)$1	262	106	146	15.4926
===[eeeee####ccc[bbmmmmbb]ccc333eeeee000	chr1:33789873-33790097(-)$1	224	7	47	15.1396
eeeee!!gggggggbb[bbmmmmbbbb]ggggggg22eee	chr16:87893378-87893596(-)$1	218	87	127	14.4431
cc####ggggggg[eeeeellleeeee]gggggggccc22	chr9:136228428-136228679(-)$1	251	191	231	12.8930
fffff[ggggggg"""cccnnnnncccggggggg]fffff	chr1:2164005-2164293(+)$1	288	109	149	12.3878
cc"""ggggggg[eeeeemmmmeeeee]ggggggg4444c	chr17:78534593-78534848(+)$1	255	157	197	13.6849
:ccc!!eeeeegggggggbblllbb]ggggggg]eeeee4	chr17:70553128-70553384(-)$1	256	193	233	12.4456
iiiii===========]bb:ffffff[=============	chr20:43033039-43033291(+)$1	252	144	184	12.6453
h$$$$$eeeee[ccc[cccmmmmccc]ccc]eeeee4444	chr16:67614026-67614318(+)$1	292	65	105	13.4901
:ggggggg!!iiiiiiiiimmmmiiiiiiiii]ggggggg	chr17:7017153-7017426(-)$1	273	228	268	15.6308
ccbbccc!!==========mmmm==========4444ccc	chr1:2206725-2206974(+)$1	249	25	65	16.5216
gggiiiiiiiii[bb[ccclllccc333bbiiiiiiiii:	chr17:80014961-80015409(+)$1	448	363	403	14.5661
=============[eeeeemmmmeeeee============	chr11:116715121-116715401(-)$1	280	32	72	17.5459
gg!!ffffff[ccc"""bbmmmmbb22ccc]ffffff]gg	chr6:7883111-7883374(-)$1	263	102	142	14.8654
!!dddd####iiiiiiiiillliiiiiiiiidddd22eee	chr17:37075452-37075713(+)$1	261	64	104	12.8965
=====$$$$$iiiiiiiiimmmmiiiiiiiii333=====	chr17:7016051-7016284(-)$1	233	165	205	17.0555
====[ccc[dddd####ccclllccc333dddd22ccc]=	chr20:62362907-62363240(+)$1	333	33	73	12.4572
ff[a"""eeeee[ffffffmmmmffffff]eeeee333a]	chr16:89586129-89586363(+)$1	234	161	201	13.1098
gggg####ccc[bb[bboooooobb]bb]ccc22gggggg	chr7:47511217-47511509(-)$1	292	96	136	12.5882
[iiiiiiiii"""ddddoooooodddd22iiiiiiiiibb	chr21:46845419-46845679(+)$1	260	213	253	13.6164
####==========!!bbnnnnnbb==========]dddd	chr3:45785062-45785359(+)$1	297	125	165	16.0065
eee!!eeeee"""ccc[bbmmmmbb]ccceeeee333eee	chr17:74544387-74544701(-)$1	314	176	216	15.4491
iiiiiiiccc!!bb[ddddmmmmdddd]bb22ccc4444i	chr14:105890174-105890452(+)$1	278	101	141	13.3539
EEccc[iiiiiiiii!!bbmmmmbb22iiiiiiiii]ccc	chr1:2179475-2179680(+)$1	205	102	142	15.5273
bbcccggggggg!!eeeeemmmmeeeeegggggggggggg	chr19:945221-945517(+)$1	296	178	218	13.7384
=========$$$$$eeeeemmmmeeeee==========]b	chr16:4739396-4739646(+)$1	250	93	133	15.8908
!!============[bb[annnnna]bb============	chr12:133112776-133113051(+)$1	275	67	107	16.2423
gggggg[bb[iiiiiiiiillliiiiiiiii]bb333ggg	chr17:79477256-79477473(-)$1	217	13	53	14.6627
##dddd!!eeeee[cccbboooooobb]ccc]eeeee333	chr11:68241424-68241675(+)$1	251	173	213	11.7435
!!==========[ccc[bbmmmmbb333ccc]========	chr1:2198695-2198939(+)$1	244	37	77	20.0163
g==========[ccc!!bbmmmmbb22ccc==========	chr2:236480851-236481119(+)$1	268	149	189	19.4926
"""ddddeeeee[cccabbmmmmbb]a]ccc]eeeee]dd	chr16:89461683-89461929(-)$1	246	17	57	14.4132
:============cccnnnnnccc333============:	chr7:157667152-157667512(-)$1	360	69	109	12.5363
b!!ffffff"""gggggggmmmmggggggg]ffffffbb]	chr17:79961365-79961613(+)$1	248	58	98	13.0472
===========!!ccc[bbmmmmbb]ccc55555======	chr9:136533221-136533502(-)$1	281	216	256	15.3096
eeee[dddd[a!!ccc[bbmmmmbb]ccc22adddd]eee	chr2:20419554-20419808(-)$1	254	200	240	13.8897
c]dddd===========[annnnna]===========iii	chr4:1242005-1242270(-)$1	265	14	54	15.3880
ee!!cccggggggg"""bbmmmmbb22ggggggg]ccc>>	chr3:185533694-185534016(-)$1	322	125	165	15.9709
gg"""ccc[cccccc[cccmmmmccc]ccc]cccccc333	chr1:2179328-2179612(+)$1	284	197	237	15.2778
=========!!a[eeeeennnnneeeeea]==========	chr2:10306885-10307142(+)$1	257	126	166	15.0161
e[a####dddd"""a[bbnnnnnbb]a22dddd333a]ee	chr19:2272906-2273128(+)$1	222	138	178	12.7056
ggggg[ccc####ccccccmmmmccc]ccc4444ccc]gg	chr17:79780915-79781165(-)$1	250	147	187	15.6706
[iiiiiiiiillliiiiiiiii]bb333ggggggg333bb	chr17:79477340-79477548(-)$1	208	97	137	12.6237
===========####ddddoooooodddd333========	chr19:944891-945123(+)$1	232	111	151	15.6031
ffff[bb[a"""ccc[cccmmmmcccccc333abbfffff	chr19:3208335-3208608(+)$1	273	125	165	13.3634
g[ccc[ccc####ffffffmmmmffffff333ccc]cccg	chr21:46847450-46847721(+)$1	271	103	143	14.1976
====$$$$$ccc[bb!!bbmmmmbb]bb]ccc========	chr2:38553064-38553315(-)$1	251	27	67	16.3288
eeeee!!cccffffff[bbmmmmbbffffff]ccceeeee	chr1:2171846-2172094(+)$1	248	57	97	12.8776
[===========[a"""bbmmmmbb]a]===========c	chr22:20112239-20112505(+)$1	266	145	185	20.3918
$$$ggggggg[eeeee[bbmmmmbb]eeeee]ggggggg2	chr16:50630495-50630707(+)$1	212	48	88	14.7272

#otherMatches

#Seq PSSM
CGUGCAGGCUGCGUAGUGGGUCACCUGUGGCCAAGGCCUG	chr1:2162575-2162837(+)$1	262	106	146	15.4926
GGAUGGAGGCCUAGAAAGCCCUUGCCUUCCUUCCUCCCAC	chr1:33789873-33790097(-)$1	224	7	47	15.1396
gcuggagugcaguggcaugaucucagcucacugcaacccg	chr16:87893378-87893596(-)$1	218	87	127	14.4431
GAUUCUGGCAAAACAAUUUCUAAGAUUUUUUUGCUUUAUG	chr9:136228428-136228679(-)$1	251	191	231	12.8930
CUCCUCUUAGGGACCCUGGGGCUGCUAUCCUUGAcagggg	chr1:2164005-2164293(+)$1	288	109	149	12.3878
CCGGGGGGCUGGACAGGACAGAUCCUGACCGGCUUAUAAG	chr17:78534593-78534848(+)$1	255	157	197	13.6849
ACCCAUGGACAGAGACCCCUCCCGGAGGGUCUUGUGUCUU	chr17:70553128-70553384(-)$1	256	193	233	12.4456
uguauguauauguguggacuguaugugugcacacauuugu	chr20:43033039-43033291(+)$1	252	144	184	12.6453
UAGUUUGuuaaauuauaaugauuauuuuaaauuaauuuag	chr16:67614026-67614318(+)$1	292	65	105	13.4901
ACAUGUGCCUCGUAUGUGCGUGUGCACGUAUGUGCAUAUG	chr17:7017153-7017426(-)$1	273	228	268	15.6308
UCGAGGUUCCCACAGGGAGGAGGCUUCCUGUGGCUCCGCC	chr1:2206725-2206974(+)$1	249	25	65	16.5216
AUUAAAGAGCAGACUCAGCGUUGCUCUUGGCUGUUCUUUC	chr17:80014961-80015409(+)$1	448	363	403	14.5661
uauauaauauauaauauaauauauuauauauauauuauau	chr11:116715121-116715401(-)$1	280	32	72	17.5459
CAGAACAUACUAAGCGUGAGGUAUCUUCUUUGUGUGUGUG	chr6:7883111-7883374(-)$1	263	102	142	14.8654
AUGGGCUCUACCUCUCUUUCUCAAAGAGGGGGCUCUGCCC	chr17:37075452-37075713(+)$1	261	64	104	12.8965
UAGCUGGGCUGGAAUGAGGGACUCCUCAUUCCUGAGGCUG	chr17:7016051-7016284(-)$1	233	165	205	17.0555
uguAAAGUGUACAGUUGGCCCUUGgugugugugugauugu	chr20:62362907-62363240(+)$1	333	33	73	12.4572
CAGUGGUAUCAGCCGUUUGUUUUUAGAUGACUGAUUGAAG	chr16:89586129-89586363(+)$1	234	161	201	13.1098
CUCACACCUCUCCAGCCUCAUCUGGGUGAAGACAUGGGCC	chr7:47511217-47511509(-)$1	292	96	136	12.5882
UCCCUGGGGGCCUGUGGUGACCCCCAUCCUCCCCAGGGUG	chr21:46845419-46845679(+)$1	260	213	253	13.6164
CUUGGAAGAUUCCAUUGUGCAGAACUGGAGUCUUUACUGA	chr3:45785062-45785359(+)$1	297	125	165	16.0065
cugacaccugauacaggguuuguacauugcagguucccag	chr17:74544387-74544701(-)$1	314	176	216	15.4491
UUGGGGUCCCACCCAUCUUUUCCAAGAAGGCAGGGAAGAG	chr14:105890174-105890452(+)$1	278	101	141	13.3539
GCCCUAGGGGCCUGGCCAGCUGCCUUUCCAGGCCCUGAGG	chr1:2179475-2179680(+)$1	205	102	142	15.5273
CAGCCCACCUCCGUCUGCUCCCUAGCGGGGAGGUGUCCAG	chr19:945221-945517(+)$1	296	178	218	13.7384
GCUCGGGGCCUUGGGGUGCAUGGGUGCCGCCCUGGGCAGC	chr16:4739396-4739646(+)$1	250	93	133	15.8908
GCCAUGUGUACAUGAUGGUGUGUGAGUGCAUGUGUACAUG	chr12:133112776-133113051(+)$1	275	67	107	16.2423
GUACGUGUGGCUUGGUCACUUCGUGGCUAAGGUAAGAACG	chr17:79477256-79477473(-)$1	217	13	53	14.6627
aaacuccugggcucaaggaauccucucgcuucagccuccc	chr11:68241424-68241675(+)$1	251	173	213	11.7435
CACUCAGAAUUCAGCUUGCGCGGGCUGCGGUGGAGUUCUG	chr1:2198695-2198939(+)$1	244	37	77	20.0163
CCCCAUCAGUGGCACCUCACUGUUGCUGUGCACUGGUGGG	chr2:236480851-236481119(+)$1	268	149	189	19.4926
UGUGCGUCUGUUCCUGGGCGCAUGCUCACAGAAGCAGCAC	chr16:89461683-89461929(-)$1	246	17	57	14.4132
uguguaugugcaugagugugucucugugugugugugcaug	chr7:157667152-157667512(-)$1	360	69	109	12.5363
UGUGCUCAGCCUGGGGGCGGCGCCGUCUCCUCUGGGUGGG	chr17:79961365-79961613(+)$1	248	58	98	13.0472
AGAGGGGGCCCCUUGCAGACAGGUCAGCAUCCAUGGGUCC	chr9:136533221-136533502(-)$1	281	216	256	15.3096
CCAGGUCCUGCUGGGGGUGGGGACAGCCCAUGAGGAACUG	chr2:20419554-20419808(-)$1	254	200	240	13.8897
UGGGGCGCGCGCUCCCGGGCCACUCGCGGGAGCGCGCCUC	chr4:1242005-1242270(-)$1	265	14	54	15.3880
GGUUCAGACAGCCUGUUGCAAAGGUCAGGGCUGUGUUGUG	chr3:185533694-185534016(-)$1	322	125	165	15.9709
GACCCUGGUGCUUUUGGGGACUUUCUGGAGCAGCCCACAU	chr1:2179328-2179612(+)$1	284	197	237	15.2778
CGGGGUUGGGAGCGUGGCAAUGGGUCACCACUGACCCUGU	chr2:10306885-10307142(+)$1	257	126	166	15.0161
CCCGACGCUUGCUUCAUGGCCUACACGUUCGAGAGAGAGU	chr19:2272906-2273128(+)$1	222	138	178	12.7056
GGGCUGCAGAUCCCAGCACUGGCGUGACUGACGGCUGAGG	chr17:79780915-79781165(-)$1	250	147	187	15.6706
GCUUGGUCACUUCGUGGCUAAGGUAAGAACGUGCUUGUGG	chr17:79477340-79477548(-)$1	208	97	137	12.6237
GUGGCUGGGCGUCUCUGCCCUAGCUGGCGCCCUGCCCAGC	chr19:944891-945123(+)$1	232	111	151	15.6031
GCCCCUGUGCCUCUGCGGCCCCAGCCCAGCUCCCAGGGCC	chr19:3208335-3208608(+)$1	273	125	165	13.3634
GUGUUGAGGUCUCUGUGCAUGCUUGUGCGUACCCUGGACU	chr21:46847450-46847721(+)$1	271	103	143	14.1976
ugguaaaguguaggagagcagaagcaucguaugccaccuu	chr2:38553064-38553315(-)$1	251	27	67	16.3288
UUGCCUGGCCCCCAUGAGGAGGUCCCGUGGGUGGUGGCGG	chr1:2171846-2172094(+)$1	248	57	97	12.8776
AUCUGACCCUGGGCUUCUGACUUCACGGCCAGGGUCAGAA	chr22:20112239-20112505(+)$1	266	145	185	20.3918
UUCUGAGUCAGUAAAUACAGAGCUGCAUUUGGUGGUUCAA	chr16:50630495-50630707(+)$1	212	48	88	14.7272

#DB
((.((.(((((((....((....)))))))))...)).))	chr1:2162575-2162837(+)$1	1	106	146	15.4926
(((.(((((....(((.((....)).)))...)))))...	chr1:33789873-33790097(-)$1	1	7	47	15.1396
(((((..(((((((((.((....)))).)))))))..)))	chr16:87893378-87893596(-)$1	1	87	127	14.4431
((....(((((((.(((((...))))).))))))))))..	chr9:136228428-136228679(-)$1	1	191	231	12.8930
(((((.(((((((...(((.....)))))))))).)))))	chr1:2164005-2164293(+)$1	1	109	149	12.3878
((...(((((((.(((((....))))).)))))))....)	chr17:78534593-78534848(+)$1	1	157	197	13.6849
.(((..((((((((((((((...)).))))))).))))).	chr17:70553128-70553384(-)$1	1	193	233	12.4456
)))))))))))))))).)).((((((.(((((((((((((	chr20:43033039-43033291(+)$1	1	144	184	12.6453
(.....(((((.(((.(((....))).))).)))))....	chr16:67614026-67614318(+)$1	1	65	105	13.4901
.(((((((..(((((((((....))))))))).)))))))	chr17:7017153-7017426(-)$1	1	228	268	15.6308
(((((((..((((((((((....))))))))))....)))	chr1:2206725-2206974(+)$1	1	25	65	16.5216
)))(((((((((.((.(((...)))...))))))))))).	chr17:80014961-80015409(+)$1	1	363	403	14.5661
(((((((((((((.(((((....)))))))))))))))))	chr11:116715121-116715401(-)$1	1	32	72	17.5459
((..((((((.(((...((....))..))).)))))).))	chr6:7883111-7883374(-)$1	1	102	142	14.8654
..((((....(((((((((...)))))))))))))..)))	chr17:37075452-37075713(+)$1	1	64	104	12.8965
(((((.....(((((((((....)))))))))...)))))	chr17:7016051-7016284(-)$1	1	165	205	17.0555
((((.(((.((((....(((...)))...))))..))).)	chr20:62362907-62363240(+)$1	1	33	73	12.4572
((.(...(((((.((((((....)))))).)))))...).	chr16:89586129-89586363(+)$1	1	161	201	13.1098
((((....(((.((.((......)).)).)))..))))))	chr7:47511217-47511509(-)$1	1	96	136	12.5882
.(((((((((...((((......))))..)))))))))))	chr21:46845419-46845679(+)$1	1	213	253	13.6164
....((((((((((..((.....)))))))))))).))))	chr3:45785062-45785359(+)$1	1	125	165	16.0065
(((..(((((...(((.((....)).))))))))...)))	chr17:74544387-74544701(-)$1	1	176	216	15.4491
((((((((((..((.((((....)))).))..)))....)	chr14:105890174-105890452(+)$1	1	101	141	13.3539
))(((.(((((((((..((....))..))))))))).)))	chr1:2179475-2179680(+)$1	1	102	142	15.5273
)))))(((((((..(((((....))))))))))))(((((	chr19:945221-945517(+)$1	1	178	218	13.7384
(((((((((.....(((((....))))))))))))))).)	chr16:4739396-4739646(+)$1	1	93	133	15.8908
..((((((((((((.((.(.....).))))))))))))))	chr12:133112776-133113051(+)$1	1	67	107	16.2423
((((((.((.(((((((((...))))))))).))...)))	chr17:79477256-79477473(-)$1	1	13	53	14.6627
..((((..(((((.(((((......)).))).)))))...	chr11:68241424-68241675(+)$1	1	173	213	11.7435
..((((((((((.(((.((....))...))).))))))))	chr1:2198695-2198939(+)$1	1	37	77	20.0163
)((((((((((.(((..((....))..)))))))))))))	chr2:236480851-236481119(+)$1	1	149	189	19.4926
...(((((((((.((((((....)).).))).))))).))	chr16:89461683-89461929(-)$1	1	17	57	14.4132
.(((((((((((((((.....)))...)))))))))))).	chr7:157667152-157667512(-)$1	1	69	109	12.5363
(..((((((...(((((((....))))))).)))))))).	chr17:79961365-79961613(+)$1	1	58	98	13.0472
(((((((((((..(((.((....)).))).....))))))	chr9:136533221-136533502(-)$1	1	216	256	15.3096
((((.((((.(..(((.((....)).)))..))))).)))	chr2:20419554-20419808(-)$1	1	200	240	13.8897
).))))(((((((((((.(.....).)))))))))))(((	chr4:1242005-1242270(-)$1	1	14	54	15.3880
((..((((((((((...((....))..))))))).)))..	chr3:185533694-185534016(-)$1	1	125	165	15.9709
((...(((.((((((.(((....))).))).))))))...	chr1:2179328-2179612(+)$1	1	197	237	15.2778
(((((((((..(.(((((.....)))))).))))))))))	chr2:10306885-10307142(+)$1	1	126	166	15.0161
(.(....((((...(.((.....)).)..))))...).))	chr19:2272906-2273128(+)$1	1	138	178	12.7056
(((((.(((....((((((....))).)))....))).))	chr17:79780915-79781165(-)$1	1	147	187	15.6706
.(((((((((...))))))))).))...)))))))...))	chr17:79477340-79477548(-)$1	1	97	137	12.6237
(((((((((((....((((......))))...))))))))	chr19:944891-945123(+)$1	1	111	151	15.6031
((((.((.(...(((.(((....))))))...))))))))	chr19:3208335-3208608(+)$1	1	125	165	13.3634
(.(((.(((....((((((....))))))...))).))))	chr21:46847450-46847721(+)$1	1	103	143	14.1976
((((.....(((.((..((....)).)).)))))))))))	chr2:38553064-38553315(-)$1	1	27	67	16.3288
(((((..(((((((((.((....)))))))).))))))))	chr1:2171846-2172094(+)$1	1	57	97	12.8776
.(((((((((((.(...((....)).).))))))))))))	chr22:20112239-20112505(+)$1	1	145	185	20.3918
...(((((((.(((((.((....)).))))).))))))).	chr16:50630495-50630707(+)$1	1	48	88	14.7272

#PSSM
= : 0.18	g : 0.16	e : 0.12	f : 0.08	c : 0.08	: : 0.06	! : 0.06	[ : 0.06	i : 0.04	# : 0.04	b : 0.04	h : 0.02	E : 0.02	" : 0.02	$ : 0.02	
= : 0.23	g : 0.14	e : 0.10	f : 0.08	c : 0.08	i : 0.08	! : 0.08	$ : 0.04	# : 0.04	[ : 0.04	E : 0.02	b : 0.02	" : 0.02	] : 0.02	
= : 0.27	g : 0.10	e : 0.08	c : 0.08	i : 0.08	" : 0.06	! : 0.06	d : 0.06	[ : 0.04	# : 0.04	f : 0.04	$ : 0.04	b : 0.02	a : 0.02	
= : 0.25	i : 0.10	g : 0.10	c : 0.08	d : 0.08	e : 0.06	# : 0.06	f : 0.06	! : 0.06	b : 0.04	" : 0.04	[ : 0.02	$ : 0.02	a : 0.02	
= : 0.23	i : 0.10	c : 0.10	g : 0.08	d : 0.08	e : 0.06	# : 0.06	f : 0.06	" : 0.06	[ : 0.06	! : 0.04	$ : 0.04	b : 0.02	
= : 0.23	[ : 0.10	g : 0.10	d : 0.10	c : 0.08	i : 0.08	! : 0.06	# : 0.06	$ : 0.06	e : 0.04	f : 0.04	" : 0.02	b : 0.02	
= : 0.25	g : 0.14	c : 0.12	i : 0.10	e : 0.08	! : 0.06	# : 0.06	f : 0.04	$ : 0.04	d : 0.04	" : 0.02	[ : 0.02	b : 0.02	
= : 0.25	g : 0.18	e : 0.12	c : 0.12	i : 0.08	! : 0.04	f : 0.04	# : 0.04	$ : 0.04	d : 0.04	b : 0.02	[ : 0.02	
= : 0.25	g : 0.16	e : 0.14	c : 0.10	i : 0.08	! : 0.04	f : 0.04	$ : 0.04	[ : 0.04	d : 0.04	# : 0.02	b : 0.02	a : 0.02	
= : 0.23	g : 0.16	e : 0.12	c : 0.10	# : 0.08	i : 0.08	! : 0.04	$ : 0.04	d : 0.04	[ : 0.04	" : 0.04	f : 0.02	
= : 0.23	g : 0.14	i : 0.12	e : 0.10	" : 0.08	# : 0.06	c : 0.06	[ : 0.04	d : 0.04	! : 0.04	$ : 0.02	a : 0.02	l : 0.02	f : 0.02	
= : 0.18	g : 0.16	i : 0.12	" : 0.10	# : 0.08	e : 0.08	[ : 0.06	c : 0.06	! : 0.06	d : 0.02	$ : 0.02	a : 0.02	l : 0.02	f : 0.02	
[ : 0.16	g : 0.14	= : 0.14	c : 0.10	i : 0.10	# : 0.08	" : 0.06	! : 0.06	b : 0.04	e : 0.04	d : 0.02	$ : 0.02	l : 0.02	f : 0.02	
c : 0.25	i : 0.12	= : 0.10	g : 0.08	b : 0.08	# : 0.06	[ : 0.06	e : 0.06	f : 0.06	" : 0.04	d : 0.02	! : 0.02	$ : 0.02	a : 0.02	
c : 0.25	e : 0.14	i : 0.12	" : 0.08	# : 0.06	b : 0.06	= : 0.06	f : 0.06	[ : 0.06	g : 0.04	d : 0.02	! : 0.02	a : 0.02	
c : 0.18	e : 0.14	[ : 0.10	i : 0.10	" : 0.08	! : 0.08	b : 0.06	= : 0.06	f : 0.06	d : 0.06	# : 0.04	g : 0.04	
[ : 0.16	c : 0.14	e : 0.12	i : 0.10	b : 0.08	" : 0.06	d : 0.06	! : 0.06	# : 0.04	g : 0.04	= : 0.04	f : 0.04	] : 0.02	a : 0.02	n : 0.02	
b : 0.40	c : 0.14	e : 0.12	i : 0.10	g : 0.04	f : 0.04	o : 0.04	d : 0.04	[ : 0.04	= : 0.02	n : 0.02	
b : 0.38	c : 0.14	i : 0.10	e : 0.08	n : 0.08	f : 0.04	o : 0.04	d : 0.04	a : 0.04	m : 0.02	= : 0.02	g : 0.02	
m : 0.62	n : 0.14	l : 0.08	o : 0.08	b : 0.02	: : 0.02	c : 0.02	i : 0.02	
m : 0.62	n : 0.14	l : 0.12	o : 0.08	f : 0.02	i : 0.02	
m : 0.62	l : 0.12	n : 0.12	o : 0.08	f : 0.02	c : 0.02	i : 0.02	
m : 0.60	n : 0.12	o : 0.08	e : 0.04	l : 0.04	c : 0.04	i : 0.04	f : 0.02	] : 0.02	
b : 0.42	c : 0.14	e : 0.12	i : 0.08	n : 0.06	f : 0.06	d : 0.04	o : 0.04	= : 0.02	g : 0.02	
b : 0.42	c : 0.14	e : 0.12	i : 0.08	f : 0.06	d : 0.04	a : 0.04	o : 0.04	= : 0.02	3 : 0.02	g : 0.02	
] : 0.25	e : 0.12	c : 0.12	f : 0.08	i : 0.08	3 : 0.08	2 : 0.08	d : 0.06	g : 0.04	b : 0.04	= : 0.04	
e : 0.14	c : 0.12	b : 0.10	3 : 0.10	i : 0.08	2 : 0.08	g : 0.06	] : 0.06	= : 0.06	f : 0.06	d : 0.06	a : 0.06	[ : 0.02	
c : 0.19	] : 0.14	g : 0.10	= : 0.10	i : 0.10	e : 0.10	3 : 0.08	f : 0.06	b : 0.06	2 : 0.04	d : 0.02	
c : 0.25	g : 0.19	= : 0.18	i : 0.10	f : 0.06	b : 0.04	] : 0.04	2 : 0.04	3 : 0.02	a : 0.02	d : 0.02	e : 0.02	
g : 0.19	c : 0.19	= : 0.18	i : 0.12	3 : 0.08	b : 0.04	d : 0.04	] : 0.04	e : 0.04	5 : 0.02	2 : 0.02	f : 0.02	
= : 0.21	g : 0.18	i : 0.14	c : 0.10	3 : 0.08	] : 0.08	e : 0.06	d : 0.04	2 : 0.04	5 : 0.02	4 : 0.02	f : 0.02	
= : 0.21	g : 0.18	] : 0.12	i : 0.10	3 : 0.08	e : 0.06	d : 0.06	c : 0.06	f : 0.04	2 : 0.02	5 : 0.02	a : 0.02	4 : 0.02	
= : 0.27	g : 0.18	e : 0.12	d : 0.08	c : 0.08	i : 0.06	3 : 0.04	f : 0.04	] : 0.02	2 : 0.02	b : 0.02	5 : 0.02	4 : 0.02	a : 0.02	
= : 0.25	g : 0.18	e : 0.12	c : 0.08	3 : 0.06	i : 0.06	4 : 0.04	f : 0.04	d : 0.04	2 : 0.04	b : 0.04	] : 0.02	5 : 0.02	
= : 0.27	g : 0.16	e : 0.12	3 : 0.10	c : 0.10	i : 0.06	] : 0.04	f : 0.04	d : 0.04	4 : 0.02	2 : 0.02	b : 0.02	
= : 0.27	e : 0.12	c : 0.10	3 : 0.10	f : 0.08	g : 0.08	4 : 0.06	i : 0.06	2 : 0.04	] : 0.04	b : 0.02	d : 0.02	
= : 0.27	c : 0.12	e : 0.10	f : 0.08	4 : 0.08	g : 0.08	3 : 0.08	2 : 0.04	i : 0.04	] : 0.04	b : 0.02	d : 0.02	a : 0.02	
= : 0.25	e : 0.12	c : 0.12	] : 0.10	g : 0.10	3 : 0.08	4 : 0.06	i : 0.06	f : 0.04	0 : 0.02	d : 0.02	b : 0.02	
= : 0.23	e : 0.14	g : 0.14	f : 0.06	4 : 0.06	c : 0.06	b : 0.06	i : 0.04	] : 0.04	d : 0.04	3 : 0.04	0 : 0.02	2 : 0.02	a : 0.02	> : 0.02	
= : 0.21	g : 0.14	e : 0.12	c : 0.08	f : 0.06	b : 0.06	2 : 0.04	4 : 0.04	: : 0.04	] : 0.04	d : 0.04	i : 0.04	3 : 0.04	0 : 0.02	> : 0.02	

#score	734.9396859794178
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075NSB_SRSF9_CDS_m2_run2.txt

#BEAR
:dddd[eeeeemmmmeeeee]dddd	chr11:129991537-129991765(+)$1	228	68	93	8.7904
[dddd[eeeeemmmmeeeee]dddd	chr11:129991565-129991802(+)$1	237	40	65	9.8645
ggggggg[cccmmmmcccggggggg	chr14:21463959-21464221(+)$1	262	19	44	9.2972
ddd####ddddmmmmdddd22dddd	chr20:57266422-57266709(+)$1	287	173	198	12.6836
!!bb"""ddddmmmmdddd22bbdd	chr14:23528288-23528517(-)$1	229	119	144	12.9422
[ccc"""ddddmmmmddddcccbbe	chr3:184099255-184099512(+)$1	257	115	140	13.0886
gggggg[ddddmmmmddddgggggg	chr20:52197889-52198177(-)$1	288	150	175	12.0268
"""ccc[ddddmmmmddddccc22d	chr17:27075949-27076270(+)$1	321	44	69	12.3723
eee[cccddddmmmmdddd22ccc]	chr6:32939492-32939729(+)$1	237	178	203	11.8811
ffffff[ddddmmmmdddd333fff	chr16:68265771-68266090(-)$1	319	137	162	12.5597
[eeeee!!cccmmmmccc]eeeee]	chr20:52198008-52198239(-)$1	231	191	216	8.8499
[ccc!!ddddooooooddddccc]c	chr16:22337033-22337349(+)$1	316	289	314	9.7781
ffff[ccccccmmmmccc22ccc22	chr3:184098397-184098683(+)$1	286	197	222	9.4847
ffffcccddddmmmmdddd]ccc::	chr3:184102905-184103127(+)$1	222	81	106	10.1788
fffff[eeeeemmmmeeeee]ffff	chr6:117923173-117923507(-)$1	334	119	144	10.0533
cc$$$$$ddddmmmmddddccc444	chr17:78599411-78599694(+)$1	283	207	232	12.1271
"ccc"""ddddmmmmddddccc]ee	chr7:65551630-65551907(+)$1	277	45	70	13.4386
&&ccc!!ddddmmmmdddd4444cc	chr20:34302176-34302408(-)$1	232	88	113	12.4756
""ccc[bbcccmmmmccc]bbccc2	chr3:56716851-56717134(-)$1	283	88	113	8.8433
fff!!bbddddmmmmdddd]bb22f	chr2:85769679-85769899(+)$1	220	11	36	11.1889
dddd"""ddddmmmmdddd333ddd	chr3:9854573-9854897(+)$1	324	7	32	13.3308
fff####ddddmmmmddddffffff	chr6:138751667-138751951(-)$1	284	205	230	12.5138
ggggggeeeeemmmmeeeeecccbb	chr20:34302145-34302376(-)$1	231	141	166	9.5741
fff####ddddllldddd4444fff	chr4:83347514-83347719(-)$1	205	88	113	11.2024
###bb"""ddddllldddd333bb]	chr19:1360067-1360399(+)$1	332	229	254	10.4901
ffff####cccmmmmccc22fffff	chr21:47569911-47570164(-)$1	253	197	222	10.2709
fffff!!ddddllldddd4444fff	chr14:34931174-34931440(-)$1	266	2	27	10.7135
[dddd!!ddddmmmmdddddddd33	chr22:24036337-24036659(-)$1	322	150	175	11.9667
!ccc!!ddddnnnnnddddccc22d	chr8:94746733-94747045(-)$1	312	149	174	9.3269
ccc!!a!!cccmmmmccc22a22cc	chr2:39570422-39570694(-)$1	272	145	170	10.4766
gg"""bb[ddddlllddddbb333g	chr16:89350981-89351318(-)$1	337	208	233	8.9697
$dddd[eeeeemmmmeeeee333dd	chr20:25457554-25457809(-)$1	255	171	196	10.4603
dddd"""ddddmmmmdddddddd]d	chr20:62311915-62312171(+)$1	256	39	64	12.1283
$$$ccc[ddddllldddd]ccc22h	chr3:48445743-48445997(-)$1	254	217	242	9.2525
fff####ddddllldddd4444fff	chr4:83347519-83347770(-)$1	251	139	164	11.2024
dddbb"""cccmmmmccc333bb]d	chr16:66768063-66768315(-)$1	252	66	91	10.3367
!!bb"""ddddmmmmdddd22bbdd	chr14:23528234-23528478(-)$1	244	80	105	12.9422
!ccc!!ddddnnnnnddddccc22d	chr8:94746584-94746916(-)$1	332	20	45	9.3269
ccbba[eeeeemmmmeeeee]a]bb	chr1:2160404-2160676(+)$1	272	80	105	9.8315
eeeccc[ddddmmmmddddccc]ee	chr2:128180520-128180764(+)$1	244	167	192	11.8885
a[a[gggggggmmmmggggggg]a]	chr9:131456197-131456421(+)$1	224	182	207	8.7761
fffff[ccc[ammmma]ccc]ffff	chr2:85769699-85769930(+)$1	231	149	174	8.9600
fffff[addddmmmmdddd]a]fff	chr2:128180564-128180784(+)$1	220	81	106	12.1506
!!a####eeeeellleeeeea22dd	chr11:85375448-85375725(-)$1	277	128	153	9.0130
ffffff[ddddmmmmdddd]fffff	chr11:126145864-126146227(+)$1	363	100	125	11.6271
dd[bb[eeeeemmmmeeeee]bbdd	chr11:67810936-67811207(+)$1	271	85	110	9.4670
[eeeee[ddddmmmmdddd22eeee	chr12:133360601-133360911(-)$1	310	5	30	11.5090
ggg"""eeeeemmmmeeeeeggggg	chr11:116661379-116661660(-)$1	281	147	172	10.6922
dddbb[eeeeemmmmeeeee]bb]d	chr19:39437030-39437285(-)$1	255	142	167	9.5915
:==========mmmm==========	chr2:70056989-70057298(+)$1	309	3	28	8.6317
:ccc[a!!cccmmmmccc333a]cc	chr16:24802721-24802990(+)$1	269	125	150	10.4402
cccccc[ddddllldddd22ccc]c	chr20:60909215-60909496(-)$1	281	53	78	10.3262
::ccc!!ddddmmmmdddd]ccc:C	chr9:116997809-116998032(+)$1	223	183	208	9.5021
##ccc!!ddddmmmmdddd22cccd	chr19:19105847-19106166(-)$1	319	94	119	13.4126
bdddd!!ddddmmmmdddd666666	chr2:220099491-220099734(+)$1	243	191	216	9.8664
ggggggeeeeemmmmeeeeecccbb	chr20:34302118-34302345(-)$1	227	110	135	9.5741

#otherMatches

#Seq PSSM
AGACAAAGAUUAUUGGAUCUGUGUC	chr11:129991537-129991765(+)$1	228	68	93	8.7904
AGACAAAGAUUAUUGGAUCUGUGUC	chr11:129991565-129991802(+)$1	237	40	65	9.8645
UCAGUUUACUGAGUGCAGAGAUUGA	chr14:21463959-21464221(+)$1	262	19	44	9.2972
CCUGGAGCCUGUGGACAGGGAAGGU	chr20:57266422-57266709(+)$1	287	173	198	12.6836
AGUCGGAGCACACCUGUGCGGGACC	chr14:23528288-23528517(-)$1	229	119	144	12.9422
AGCCAGGCGCUGAGGAGCGGGCCCG	chr3:184099255-184099512(+)$1	257	115	140	13.0886
GAUGGGCUUCCCGAAGGAAUCCAUC	chr20:52197889-52198177(-)$1	288	150	175	12.0268
AGGAGAGUGUGAAGCCACAUCUGGC	chr17:27075949-27076270(+)$1	321	44	69	12.3723
ACAGCUCAGCCAAUUGGCUUGGAGA	chr6:32939492-32939729(+)$1	237	178	203	11.8811
CGGCUGCGGGGACUGCCCUUCUCGG	chr16:68265771-68266090(-)$1	319	137	162	12.5597
GGUUCUGAAGACGGAUCUGAGGAUG	chr20:52198008-52198239(-)$1	231	191	216	8.8499
GGCCAACGGGCUGCCUCUCGGGCGG	chr16:22337033-22337349(+)$1	316	289	314	9.7781
ccgcggccggcccgggcccuggcgg	chr3:184098397-184098683(+)$1	286	197	222	9.4847
AGGGCCUCGGCGGCUGCUGAAGGGA	chr3:184102905-184103127(+)$1	222	81	106	10.1788
GUGGGGGCCCCUGGCGGGGUAUCCA	chr6:117923173-117923507(-)$1	334	119	144	10.0533
CCACAAAGGCCGUCUGGCCGGCUCU	chr17:78599411-78599694(+)$1	283	207	232	12.1271
UGCUAGAGGGGAGGACCCCGGCUGC	chr7:65551630-65551907(+)$1	277	45	70	13.4386
AUCAUGUAGUUUUCUGACUCAGAAU	chr20:34302176-34302408(-)$1	232	88	113	12.4756
UAGGCCGGCGCGAUGGCGACUGCUG	chr3:56716851-56717134(-)$1	283	88	113	8.8433
GAUGCUGGUUUGACUGGACGCAAAA	chr2:85769679-85769899(+)$1	220	11	36	11.1889
acUUAUGCAAUACUUAUUGAAGAAG	chr3:9854573-9854897(+)$1	324	7	32	13.3308
AGUUCUGCAGCCCAAGCUGGCUCUC	chr6:138751667-138751951(-)$1	284	205	230	12.5138
UUGGUCAUGUUACUGAACGUACUGA	chr20:34302145-34302376(-)$1	231	141	166	9.5741
UAUGCAGACUACAGUGGUAAGAAUA	chr4:83347514-83347719(-)$1	205	88	113	11.2024
AUGUCUCCUCGCCCUGUGAUUCGAA	chr19:1360067-1360399(+)$1	332	229	254	10.4901
AGCUCACAGCCCUGGGGCGCAGCUU	chr21:47569911-47570164(-)$1	253	197	222	10.2709
gugugagcUGCAUCGCGGGAGGCGC	chr14:34931174-34931440(-)$1	266	2	27	10.7135
CGGUUCAGAGUUGGAGCUUGGCCCA	chr22:24036337-24036659(-)$1	322	150	175	11.9667
ACCUAGGGAGGAAGACUUCAGGCGG	chr8:94746733-94747045(-)$1	312	149	174	9.3269
CUUUACAGGAUAUUUAUCACGGUAA	chr2:39570422-39570694(-)$1	272	145	170	10.4766
AGCGCGGAGGGCGCUGUCCCCAAAC	chr16:89350981-89351318(-)$1	337	208	233	8.9697
GCCGCCGCAGGGACCCCUGCCACGC	chr20:25457554-25457809(-)$1	255	171	196	10.4603
GGGGCUGGGGUCGGGGCCUCCCCUG	chr20:62311915-62312171(+)$1	256	39	64	12.1283
GGAAGGUGACUCCCAGUCUCCUGGU	chr3:48445743-48445997(-)$1	254	217	242	9.2525
UAUGCAGACUACAGUGGUAAGAAUA	chr4:83347519-83347770(-)$1	251	139	164	11.2024
AAGCAAAAAGGUGACUCUGUCUGUC	chr16:66768063-66768315(-)$1	252	66	91	10.3367
AGUCGGAGCACACCUGUGCGGGACC	chr14:23528234-23528478(-)$1	244	80	105	12.9422
ACCUAGGGAGGAAGACUUCAGGCGG	chr8:94746584-94746916(-)$1	332	20	45	9.3269
UCCGACCGCUCCACCGAGCGCUGCG	chr1:2160404-2160676(+)$1	272	80	105	9.8315
GCAUCGGCAGCUUCAGCUGCGACUG	chr2:128180520-128180764(+)$1	244	167	192	11.8885
GGGGUGUAUAUAUAUAUAUAUAGUG	chr9:131456197-131456421(+)$1	224	182	207	8.7761
GUGCCGGAGGGUUCUUGUUCAGGUA	chr2:85769699-85769930(+)$1	231	149	174	8.9600
CGUGCGCCAGCCUGUGCUGCGGGCA	chr2:128180564-128180784(+)$1	220	81	106	12.1506
CGGAUCUCCUGGACCCCAGGCAACC	chr11:85375448-85375725(-)$1	277	128	153	9.0130
CCGCAGCCUGGAGUACCAGCCUGUG	chr11:126145864-126146227(+)$1	363	100	125	11.6271
UGAGCCUGCUCUGCAGGGCGAGCCA	chr11:67810936-67811207(+)$1	271	85	110	9.4670
UCUUGGCCCUUAGGAAAGGAUCCAG	chr12:133360601-133360911(-)$1	310	5	30	11.5090
GCAGGAGCUGCAGGAGCAGUUGCGC	chr11:116661379-116661660(-)$1	281	147	172	10.6922
AGCGCCCAGAUUGAGAUCUGUGUGG	chr19:39437030-39437285(-)$1	255	142	167	9.5915
GGGCUCCCUGAAGUCUCGGGGAGCC	chr2:70056989-70057298(+)$1	309	3	28	8.6317
ACAGGCAAACCUCCUGGUACAGGCU	chr16:24802721-24802990(+)$1	269	125	150	10.4402
GGUAGGAUGGCCAAGCUGCACCUGA	chr20:60909215-60909496(-)$1	281	53	78	10.3262
CUUGGCUUCCUUCCUAGGGUCCAUC	chr9:116997809-116998032(+)$1	223	183	208	9.5021
CUUCGCCCAGCAGAAGCUGACCGAU	chr19:19105847-19106166(-)$1	319	94	119	13.4126
GCCGAGACCAGGAGGCUGGGGCACA	chr2:220099491-220099734(+)$1	243	191	216	9.8664
UUGGUCAUGUUACUGAACGUACUGA	chr20:34302118-34302345(-)$1	227	110	135	9.5741

#DB
.((((.(((((....))))).))))	chr11:129991537-129991765(+)$1	1	68	93	8.7904
.((((.(((((....))))).))))	chr11:129991565-129991802(+)$1	1	40	65	9.8645
(((((((.(((....))))))))))	chr14:21463959-21464221(+)$1	1	19	44	9.2972
(((....((((....))))..))))	chr20:57266422-57266709(+)$1	1	173	198	12.6836
..((...((((....))))..))))	chr14:23528288-23528517(-)$1	1	119	144	12.9422
.(((...((((....)))))))))(	chr3:184099255-184099512(+)$1	1	115	140	13.0886
((((((.((((....))))))))))	chr20:52197889-52198177(-)$1	1	150	175	12.0268
...(((.((((....)))))))..)	chr17:27075949-27076270(+)$1	1	44	69	12.3723
(((.(((((((....))))..))).	chr6:32939492-32939729(+)$1	1	178	203	11.8811
((((((.((((....))))...)))	chr16:68265771-68266090(-)$1	1	137	162	12.5597
.(((((..(((....))).))))).	chr20:52198008-52198239(-)$1	1	191	216	8.8499
.(((..((((......))))))).)	chr16:22337033-22337349(+)$1	1	289	314	9.7781
((((.((((((....)))..)))..	chr3:184098397-184098683(+)$1	1	197	222	9.4847
))))(((((((....)))).)))..	chr3:184102905-184103127(+)$1	1	81	106	10.1788
(((((.(((((....))))).))))	chr6:117923173-117923507(-)$1	1	119	144	10.0533
((.....((((....)))))))...	chr17:78599411-78599694(+)$1	1	207	232	12.1271
.(((...((((....))))))).))	chr7:65551630-65551907(+)$1	1	45	70	13.4386
..(((..((((....))))....))	chr20:34302176-34302408(-)$1	1	88	113	12.4756
..(((.(((((....))).))))).	chr3:56716851-56717134(-)$1	1	88	113	8.8433
(((..((((((....)))).))..)	chr2:85769679-85769899(+)$1	1	11	36	11.1889
((((...((((....))))...)))	chr3:9854573-9854897(+)$1	1	7	32	13.3308
(((....((((....))))))))))	chr6:138751667-138751951(-)$1	1	205	230	12.5138
))))))(((((....)))))(((((	chr20:34302145-34302376(-)$1	1	141	166	9.5741
(((....((((...))))....)))	chr4:83347514-83347719(-)$1	1	88	113	11.2024
...((...((((...))))...)).	chr19:1360067-1360399(+)$1	1	229	254	10.4901
((((....(((....)))..)))))	chr21:47569911-47570164(-)$1	1	197	222	10.2709
(((((..((((...))))....)))	chr14:34931174-34931440(-)$1	1	2	27	10.7135
.((((..((((....))))))))..	chr22:24036337-24036659(-)$1	1	150	175	11.9667
.(((..((((.....)))))))..)	chr8:94746733-94747045(-)$1	1	149	174	9.3269
(((..(..(((....)))..)..))	chr2:39570422-39570694(-)$1	1	145	170	10.4766
((...((.((((...))))))...)	chr16:89350981-89351318(-)$1	1	208	233	8.9697
.((((.(((((....)))))...))	chr20:25457554-25457809(-)$1	1	171	196	10.4603
((((...((((....)))))))).)	chr20:62311915-62312171(+)$1	1	39	64	12.1283
...(((.((((...)))).)))..)	chr3:48445743-48445997(-)$1	1	217	242	9.2525
(((....((((...))))....)))	chr4:83347519-83347770(-)$1	1	139	164	11.2024
(((((...(((....)))...)).)	chr16:66768063-66768315(-)$1	1	66	91	10.3367
..((...((((....))))..))))	chr14:23528234-23528478(-)$1	1	80	105	12.9422
.(((..((((.....)))))))..)	chr8:94746584-94746916(-)$1	1	20	45	9.3269
(((((.(((((....))))).).))	chr1:2160404-2160676(+)$1	1	80	105	9.8315
((((((.((((....))))))).))	chr2:128180520-128180764(+)$1	1	167	192	11.8885
(.(.(((((((....))))))).).	chr9:131456197-131456421(+)$1	1	182	207	8.7761
(((((.(((.(....).))).))))	chr2:85769699-85769930(+)$1	1	149	174	8.9600
(((((.(((((....)))).).)))	chr2:128180564-128180784(+)$1	1	81	106	12.1506
..(....(((((...))))))..))	chr11:85375448-85375725(-)$1	1	128	153	9.0130
((((((.((((....)))).)))))	chr11:126145864-126146227(+)$1	1	100	125	11.6271
((.((.(((((....))))).))))	chr11:67810936-67811207(+)$1	1	85	110	9.4670
.(((((.((((....))))..))))	chr12:133360601-133360911(-)$1	1	5	30	11.5090
(((...(((((....))))))))))	chr11:116661379-116661660(-)$1	1	147	172	10.6922
(((((.(((((....))))).)).)	chr19:39437030-39437285(-)$1	1	142	167	9.5915
.((((((((((....))))))))))	chr2:70056989-70057298(+)$1	1	3	28	8.6317
.(((.(..(((....)))...).))	chr16:24802721-24802990(+)$1	1	125	150	10.4402
((((((.((((...))))..))).)	chr20:60909215-60909496(-)$1	1	53	78	10.3262
..(((..((((....)))).))).)	chr9:116997809-116998032(+)$1	1	183	208	9.5021
..(((..((((....))))..))))	chr19:19105847-19106166(-)$1	1	94	119	13.4126
(((((..((((....))))......	chr2:220099491-220099734(+)$1	1	191	216	9.8664
))))))(((((....)))))(((((	chr20:34302118-34302345(-)$1	1	110	135	9.5741

#PSSM
f : 0.23	[ : 0.10	g : 0.10	d : 0.10	! : 0.08	: : 0.07	c : 0.07	" : 0.05	e : 0.03	# : 0.03	$ : 0.03	& : 0.01	a : 0.01	b : 0.01	
f : 0.23	d : 0.19	c : 0.17	g : 0.10	e : 0.07	! : 0.05	" : 0.03	# : 0.03	& : 0.01	$ : 0.01	[ : 0.01	= : 0.01	: : 0.01	
f : 0.23	c : 0.21	d : 0.17	g : 0.08	e : 0.07	b : 0.05	" : 0.03	$ : 0.03	a : 0.03	# : 0.01	[ : 0.01	= : 0.01	
c : 0.24	f : 0.16	d : 0.12	b : 0.12	# : 0.08	g : 0.07	[ : 0.03	e : 0.03	! : 0.03	" : 0.03	$ : 0.01	= : 0.01	
c : 0.17	" : 0.14	# : 0.10	f : 0.10	d : 0.08	g : 0.08	! : 0.08	b : 0.07	e : 0.03	[ : 0.03	$ : 0.01	a : 0.01	= : 0.01	
[ : 0.17	" : 0.16	! : 0.16	c : 0.12	# : 0.10	g : 0.08	f : 0.03	e : 0.03	b : 0.03	a : 0.03	$ : 0.01	= : 0.01	
e : 0.17	! : 0.16	" : 0.14	[ : 0.14	# : 0.10	c : 0.07	d : 0.05	b : 0.05	g : 0.03	$ : 0.01	a : 0.01	= : 0.01	
d : 0.57	e : 0.19	! : 0.05	[ : 0.03	c : 0.03	" : 0.03	b : 0.01	# : 0.01	g : 0.01	= : 0.01	
d : 0.60	e : 0.19	c : 0.16	g : 0.01	= : 0.01	
d : 0.60	e : 0.19	c : 0.14	g : 0.01	[ : 0.01	= : 0.01	
d : 0.55	e : 0.19	c : 0.14	n : 0.03	o : 0.01	g : 0.01	a : 0.01	= : 0.01	
m : 0.80	l : 0.08	d : 0.03	n : 0.03	o : 0.01	e : 0.01	
m : 0.80	l : 0.14	n : 0.03	o : 0.01	
m : 0.80	l : 0.14	n : 0.03	o : 0.01	
m : 0.80	d : 0.08	l : 0.05	n : 0.03	o : 0.01	
d : 0.58	e : 0.19	c : 0.14	o : 0.01	g : 0.01	a : 0.01	= : 0.01	
d : 0.60	e : 0.19	c : 0.14	g : 0.01	] : 0.01	= : 0.01	
d : 0.60	e : 0.19	c : 0.16	g : 0.01	= : 0.01	
d : 0.51	e : 0.19	2 : 0.07	] : 0.05	4 : 0.05	g : 0.03	3 : 0.03	c : 0.01	= : 0.01	
e : 0.21	2 : 0.17	c : 0.16	3 : 0.08	] : 0.08	4 : 0.07	g : 0.05	d : 0.05	b : 0.03	f : 0.01	= : 0.01	6 : 0.01	
c : 0.26	] : 0.12	2 : 0.10	3 : 0.10	g : 0.07	4 : 0.07	b : 0.05	f : 0.05	a : 0.05	d : 0.03	e : 0.01	= : 0.01	6 : 0.01	
c : 0.32	b : 0.10	d : 0.08	3 : 0.08	f : 0.08	g : 0.07	4 : 0.07	e : 0.03	2 : 0.03	a : 0.03	] : 0.01	= : 0.01	6 : 0.01	
c : 0.17	f : 0.17	b : 0.12	2 : 0.12	d : 0.10	] : 0.08	g : 0.05	e : 0.03	4 : 0.03	3 : 0.03	= : 0.01	6 : 0.01	
f : 0.17	d : 0.16	2 : 0.10	c : 0.10	b : 0.08	] : 0.08	e : 0.07	g : 0.05	: : 0.03	3 : 0.03	4 : 0.01	a : 0.01	= : 0.01	6 : 0.01	
d : 0.28	f : 0.19	c : 0.08	g : 0.07	e : 0.07	] : 0.07	b : 0.05	2 : 0.03	: : 0.01	4 : 0.01	3 : 0.01	h : 0.01	= : 0.01	C : 0.01	6 : 0.01	

#score	601.6717377423807
#seq	56
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF985DTC_RPS3_UTR_m3_run1.txt

#BEAR
dd####bbnnnnnbb333dddd	chr12:6937531-6937836(+)$1	305	184	206	12.5045
ii[cccbbnnnnnbb]ccc22i	chr18:71958897-71959298(-)$1	401	116	138	12.1721
cc[ccc[annnnna]ccc]ccc	chr22:22221717-22221978(-)$1	261	33	55	11.7366
dd####bbnnnnnbb333dddd	chr12:6937636-6937889(+)$1	253	79	101	12.5045
ccceeeeennnnneeeee]ccc	chr3:186791957-186792222(+)$1	265	74	96	11.2414
========nnnnn=========	chr17:57728553-57728778(+)$1	225	62	84	12.2954
dd!!ddddnnnnndddd22ddd	chr5:131528548-131528808(-)$1	260	5	27	11.1481
[bb!!cccnnnnnccc]bb]cc	chr6:114178686-114178958(+)$1	272	161	183	11.8966
"""eeeeennnnneeeee22==	chr3:133474132-133474349(+)$1	217	12	34	11.2836
"""a[cccnnnnnccca]ffff	chr14:24568717-24568947(+)$1	230	132	154	12.2852
ggggggbbnnnnnbb]gggggg	chr15:76566699-76566936(-)$1	237	71	93	12.1906
ccc!!cccnnnnnccc22cccc	chr14:70346225-70346523(+)$1	298	123	145	12.6351
dddd!!bbnnnnnbb4444ddd	chr12:46754750-46754993(-)$1	243	207	229	12.1995
ddda[cccnnnnnccc]a]ddd	chr17:73774686-73774905(-)$1	219	99	121	12.2465
d]ccccccnnnnnccc:cccbb	chr22:24236933-24237178(+)$1	245	104	126	10.3460
cc!!ddddnnnnndddd4444c	chr15:72499010-72499226(-)$1	216	29	51	11.6375
eeeee[bbnnnnnbb]eeeee3	chr6:7883206-7883480(-)$1	274	68	90	12.0698
ff[eeeeennnnneeeee333f	chr1:156107418-156107685(+)$1	267	205	227	11.2278
iii"""bbnnnnnbb22iiiii	chr15:44045921-44046156(+)$1	235	103	125	12.3323
!bbeeeeennnnneeeee]bb2	chr11:74660213-74660541(+)$1	328	69	91	9.9568
!ccc[cccnnnnncccccc22b	chr15:44085868-44086145(+)$1	277	104	126	12.0438
eeffffffnnnnnffffff333	chr8:22277086-22277388(+)$1	302	258	280	10.7057
eee####annnnna4444eeee	chr8:134268909-134269199(-)$1	290	223	245	11.6730
ccc!!cccnnnnnccc]cccHH	chr17:79813013-79813225(-)$1	212	88	110	11.2640
#ccc[bboooooobb]ccceee	chr11:27493985-27494274(-)$1	289	90	112	7.2381
ddd!!cccnnnnncccdddddd	chr11:763290-763538(+)$1	248	177	199	11.8666
egggggggnnnnnggggggg]e	chr6:167369837-167370079(-)$1	242	130	152	11.3683
ccc[ddddnnnnnddddcccFF	chr17:8169970-8170266(+)$1	296	192	214	10.2681
eeeea[bbnnnnnbb]a]eeee	chr3:133467180-133467399(+)$1	219	73	95	12.0787
!cccddddnnnnndddd]ccc5	chr6:31827345-31827613(-)$1	268	182	204	10.4822
:eeeeebbnnnnnbb]eeeee:	chr3:52027753-52028065(-)$1	312	26	48	9.9769
c]ddddbbnnnnnbbhhhhhhh	chr14:24567613-24567866(+)$1	253	63	85	10.1823
""ccc[bbnnnnnbb22ccc]b	chr3:50396632-50396912(-)$1	280	9	31	11.8206
ddbb[cccnnnnnccc]bb]dd	chr20:60962083-60962291(+)$1	208	97	119	11.5147
iiiiiiiinnnnniiiiiiiii	chr19:40329682-40329927(-)$1	245	154	176	11.6982
eeee[cccnnnnnccceeeee]	chr6:167342979-167343276(-)$1	297	122	144	12.0664
c!!bbcccnnnnnccc22bb22	chr2:176046283-176046530(-)$1	247	202	224	10.9409
c[ffffffnnnnnffffff]cc	chr5:179147305-179147599(+)$1	294	162	184	10.6090
####ddddnnnnndddd333a]	chr17:28705896-28706135(+)$1	239	99	121	11.6436
ggggg!!annnnna22gggggg	chr14:95089847-95090060(+)$1	213	57	79	11.3316
fff!!cccnnnnncccffffff	chr14:23299159-23299422(+)$1	263	131	153	11.6243
fff!!cccnnnnnccc22ffff	chr3:133465224-133465428(+)$1	204	180	202	11.8068
"""eeeeennnnneeeeeffff	chr3:48638330-48638620(-)$1	290	32	54	10.9058
eeeee[bbnnnnnbbeeeeedd	chr6:30688179-30688440(+)$1	261	139	161	11.8180
[dddd[bbnnnnnbb333dddd	chrX:119602889-119603185(-)$1	296	135	157	12.1607
ddddddddnnnnndddd]dddd	chr2:20424693-20424950(-)$1	257	83	105	10.6322
eeeeecccnnnnnccceeeeec	chr11:6640326-6640550(-)$1	224	103	125	11.9301
c!!bb[bbnnnnnbb]bb22cc	chr11:118925829-118926074(-)$1	245	9	31	11.4168
eeeea[bbnnnnnbb]a]eeee	chr3:133467231-133467445(+)$1	214	22	44	12.0787
gggggbboooooobb]gggggg	chr3:128339087-128339369(-)$1	282	149	171	7.2419
dddeeeeennnnneeeee22dd	chr15:45009704-45009947(+)$1	243	119	141	10.8224
"""eeeeennnnneeeee22dd	chr17:79826734-79827041(-)$1	307	84	106	11.1838
d[bb[cccnnnnnccc]bb22d	chr19:48893602-48893854(-)$1	252	100	122	11.4033
eeffffffnnnnnffffff333	chr14:68151660-68151932(-)$1	272	175	197	10.7057
ebbbbcccnnnnnccc]bbccc	chr17:76969011-76969259(-)$1	248	36	58	10.8496
cc!!ddddnnnnndddd22ccc	chr7:91761017-91761269(-)$1	252	53	75	11.4301

#otherMatches

#Seq PSSM
CGACUUGCUCUACGCUGACGGG	chr12:6937531-6937836(+)$1	305	184	206	12.5045
GCUGGCUGAGUCGCGCGCUCUG	chr18:71958897-71959298(-)$1	401	116	138	12.1721
cccgcccgucagucugGCAGGC	chr22:22221717-22221978(-)$1	261	33	55	11.7366
CGACUUGCUCUACGCUGACGGG	chr12:6937636-6937889(+)$1	253	79	101	12.5045
AGCCCCAGAUGCCUUGGGAGCU	chr3:186791957-186792222(+)$1	265	74	96	11.2414
AGAAGGCAGUGGAUGUCUUCUU	chr17:57728553-57728778(+)$1	225	62	84	12.2954
GAUUGUAACAUGCUUGCUUUCU	chr5:131528548-131528808(-)$1	260	5	27	11.1481
CCGUCGUUACACCAACCCGAGG	chr6:114178686-114178958(+)$1	272	161	183	11.8966
GAUGCCAUUGGCUGUGGCCAGC	chr3:133474132-133474349(+)$1	217	12	34	11.2836
UAUGAUGCGGCCUGCACUGCCA	chr14:24568717-24568947(+)$1	230	132	154	12.2852
AAAAAAAUGACAAAUAUUUUUU	chr15:76566699-76566936(-)$1	237	71	93	12.1906
AGCCCGCGAACCCCGCUCGCUG	chr14:70346225-70346523(+)$1	298	123	145	12.6351
CAGAUUCCUCGCUGGUUCUUCU	chr12:46754750-46754993(-)$1	243	207	229	12.1995
AGGAGGCUAGCGAAGCGUACCU	chr17:73774686-73774905(-)$1	219	99	121	12.2465
ACAGCAUCGGCAAGAUCGGCGG	chr22:24236933-24237178(+)$1	245	104	126	10.3460
CCCCGCCCCACUCGGGCUGAAG	chr15:72499010-72499226(-)$1	216	29	51	11.6375
CGCUUUGUCCUGAGCCAAGCGA	chr6:7883206-7883480(-)$1	274	68	90	12.0698
AAAUCUUUUCAUUAAAGAAUGU	chr1:156107418-156107685(+)$1	267	205	227	11.2278
UGGACACUGCAAGAGACUUGCA	chr15:44045921-44046156(+)$1	235	103	125	12.3323
AUCGGCUUCAGACAAGUCGGAG	chr11:74660213-74660541(+)$1	328	69	91	9.9568
UUUGUGGCUUCGUGUCCAACCC	chr15:44085868-44086145(+)$1	277	104	126	12.0438
UUCAAAUGUCAGCCGUUUGUAA	chr8:22277086-22277388(+)$1	302	258	280	10.7057
AGGGACAGGUGCACACAGCCUC	chr8:134268909-134269199(-)$1	290	223	245	11.6730
GCCAAGCAGUUUUUGCAGGCAG	chr17:79813013-79813225(-)$1	212	88	110	11.2640
AGCCGCUGCAUUGAGAGGCCAG	chr11:27493985-27494274(-)$1	289	90	112	7.2381
UGGCAUGUGGCAAACACCGACA	chr11:763290-763538(+)$1	248	177	199	11.8666
ACGUGCGCGCUUGGUGCACGAU	chr6:167369837-167370079(-)$1	242	130	152	11.3683
GGCCUCCAUUGCCUGGAGCUGG	chr17:8169970-8170266(+)$1	296	192	214	10.2681
AGGGCUGUGUCUGGCUGUCCCU	chr3:133467180-133467399(+)$1	219	73	95	12.0787
GAGGGUCUGCUGGAGACGCCUG	chr6:31827345-31827613(-)$1	268	182	204	10.4822
CCGAGGCUAUCAAGGCCCUCGU	chr3:52027753-52028065(-)$1	312	26	48	9.9769
UCCACAGGCCGCACCAUGUAUG	chr14:24567613-24567866(+)$1	253	63	85	10.1823
GCCAGGCCGAGCGGGAGCUGAC	chr3:50396632-50396912(-)$1	280	9	31	11.8206
UGGUGGCAGCAGGUGUGGCGCG	chr20:60962083-60962291(+)$1	208	97	119	11.5147
GGUGUGGACCAGAUCCACAUCA	chr19:40329682-40329927(-)$1	245	154	176	11.6982
GGCCGCCGAGAGCCGGGGUCUG	chr6:167342979-167343276(-)$1	297	122	144	12.0664
GGACCCAUUCAUUGUGCCGGCG	chr2:176046283-176046530(-)$1	247	202	224	10.9409
UCCUGGAUGUGGUGUCUGGCAG	chr5:179147305-179147599(+)$1	294	162	184	10.6090
AAGAUGGCGAGCGGCCGGGACG	chr17:28705896-28706135(+)$1	239	99	121	11.6436
CGCAUCUGUGUUUCCCGUGUGU	chr14:95089847-95090060(+)$1	213	57	79	11.3316
GCUUGGGCGGGCGGCCAGUGGC	chr14:23299159-23299422(+)$1	263	131	153	11.6243
CUGCAUGCACUCCGCGCUCAGG	chr3:133465224-133465428(+)$1	204	180	202	11.8068
UCUGGCUGUUCCUCAGCCUUGU	chr3:48638330-48638620(-)$1	290	32	54	10.9058
UGGCAACCAGAUCGGUGCCAAG	chr6:30688179-30688440(+)$1	261	139	161	11.8180
gccgucgccgccUGCUCUGCGG	chrX:119602889-119603185(-)$1	296	135	157	12.1607
GCCUGUGGGUUUAUUAUAAGGC	chr2:20424693-20424950(-)$1	257	83	105	10.6322
GGAGCCCGACCAGCGGAGGACG	chr11:6640326-6640550(-)$1	224	103	125	11.9301
UCUUCACCCCUCAGGCGAUUAA	chr11:118925829-118926074(-)$1	245	9	31	11.4168
AGGGCUGUGUCUGGCUGUCCCU	chr3:133467231-133467445(+)$1	214	22	44	12.0787
CCUGCACUUUGCUGUGGCAGGC	chr3:128339087-128339369(-)$1	282	149	171	7.2419
GGAUUGGAUGAAUUCCAAAUUC	chr15:45009704-45009947(+)$1	243	119	141	10.8224
CCGCAGUUGACAAGACUGACUA	chr17:79826734-79827041(-)$1	307	84	106	11.1838
UUGCUGUGGUGUUCACUGCCCG	chr19:48893602-48893854(-)$1	252	100	122	11.4033
GAGAUUCUAAGUGGGAAUCAUU	chr14:68151660-68151932(-)$1	272	175	197	10.7057
GCGACCUGUCCAUCAGCGUGAA	chr17:76969011-76969259(-)$1	248	36	58	10.8496
AAUUGAAUUUACUAUUUUUUUC	chr7:91761017-91761269(-)$1	252	53	75	11.4301

#DB
((....((.....))...))))	chr12:6937531-6937836(+)$1	1	184	206	12.5045
((.(((((.....)).)))..)	chr18:71958897-71959298(-)$1	1	116	138	12.1721
((.(((.(.....).))).)))	chr22:22221717-22221978(-)$1	1	33	55	11.7366
((....((.....))...))))	chr12:6937636-6937889(+)$1	1	79	101	12.5045
((((((((.....))))).)))	chr3:186791957-186792222(+)$1	1	74	96	11.2414
((((((((.....)))))))))	chr17:57728553-57728778(+)$1	1	62	84	12.2954
((..((((.....))))..)))	chr5:131528548-131528808(-)$1	1	5	27	11.1481
.((..(((.....))).)).))	chr6:114178686-114178958(+)$1	1	161	183	11.8966
...(((((.....)))))..))	chr3:133474132-133474349(+)$1	1	12	34	11.2836
...(.(((.....)))).))))	chr14:24568717-24568947(+)$1	1	132	154	12.2852
((((((((.....)).))))))	chr15:76566699-76566936(-)$1	1	71	93	12.1906
(((..(((.....)))..)))(	chr14:70346225-70346523(+)$1	1	123	145	12.6351
((((..((.....))....)))	chr12:46754750-46754993(-)$1	1	207	229	12.1995
((((.(((.....))).).)))	chr17:73774686-73774905(-)$1	1	99	121	12.2465
).)))(((.....))).(((((	chr22:24236933-24237178(+)$1	1	104	126	10.3460
((..((((.....))))....)	chr15:72499010-72499226(-)$1	1	29	51	11.6375
(((((.((.....)).))))).	chr6:7883206-7883480(-)$1	1	68	90	12.0698
((.(((((.....)))))...)	chr1:156107418-156107685(+)$1	1	205	227	11.2278
(((...((.....))..)))))	chr15:44045921-44046156(+)$1	1	103	125	12.3323
.(((((((.....))))).)).	chr11:74660213-74660541(+)$1	1	69	91	9.9568
.(((.(((.....))))))..)	chr15:44085868-44086145(+)$1	1	104	126	12.0438
((((((((.....))))))...	chr8:22277086-22277388(+)$1	1	258	280	10.7057
(((....(.....)....))))	chr8:134268909-134269199(-)$1	1	223	245	11.6730
(((..(((.....))).)))))	chr17:79813013-79813225(-)$1	1	88	110	11.2640
.(((.((......)).))))))	chr11:27493985-27494274(-)$1	1	90	112	7.2381
(((..(((.....)))))))))	chr11:763290-763538(+)$1	1	177	199	11.8666
((((((((.....))))))).)	chr6:167369837-167370079(-)$1	1	130	152	11.3683
(((.((((.....)))))))))	chr17:8169970-8170266(+)$1	1	192	214	10.2681
(((((.((.....)).).))))	chr3:133467180-133467399(+)$1	1	73	95	12.0787
.(((((((.....)))).))).	chr6:31827345-31827613(-)$1	1	182	204	10.4822
.(((((((.....)).))))).	chr3:52027753-52028065(-)$1	1	26	48	9.9769
).))))((.....))(((((((	chr14:24567613-24567866(+)$1	1	63	85	10.1823
..(((.((.....))..))).)	chr3:50396632-50396912(-)$1	1	9	31	11.8206
((((.(((.....))).)).))	chr20:60962083-60962291(+)$1	1	97	119	11.5147
((((((((.....)))))))))	chr19:40329682-40329927(-)$1	1	154	176	11.6982
((((.(((.....)))))))).	chr6:167342979-167343276(-)$1	1	122	144	12.0664
(..(((((.....)))..))..	chr2:176046283-176046530(-)$1	1	202	224	10.9409
(.((((((.....)))))).))	chr5:179147305-179147599(+)$1	1	162	184	10.6090
....((((.....))))...).	chr17:28705896-28706135(+)$1	1	99	121	11.6436
(((((..(.....)..))))))	chr14:95089847-95090060(+)$1	1	57	79	11.3316
(((..(((.....)))))))))	chr14:23299159-23299422(+)$1	1	131	153	11.6243
(((..(((.....)))..))))	chr3:133465224-133465428(+)$1	1	180	202	11.8068
...(((((.....)))))))))	chr3:48638330-48638620(-)$1	1	32	54	10.9058
(((((.((.....)))))))((	chr6:30688179-30688440(+)$1	1	139	161	11.8180
.((((.((.....))...))))	chrX:119602889-119603185(-)$1	1	135	157	12.1607
((((((((.....)))).))))	chr2:20424693-20424950(-)$1	1	83	105	10.6322
)))))(((.....)))((((((	chr11:6640326-6640550(-)$1	1	103	125	11.9301
(..((.((.....)).))..))	chr11:118925829-118926074(-)$1	1	9	31	11.4168
(((((.((.....)).).))))	chr3:133467231-133467445(+)$1	1	22	44	12.0787
(((((((......)).))))))	chr3:128339087-128339369(-)$1	1	149	171	7.2419
((((((((.....)))))..))	chr15:45009704-45009947(+)$1	1	119	141	10.8224
...(((((.....)))))..))	chr17:79826734-79827041(-)$1	1	84	106	11.1838
(.((.(((.....))).))..)	chr19:48893602-48893854(-)$1	1	100	122	11.4033
((((((((.....))))))...	chr14:68151660-68151932(-)$1	1	175	197	10.7057
)))(((((.....))).))(((	chr17:76969011-76969259(-)$1	1	36	58	10.8496
((..((((.....))))..)))	chr7:91761017-91761269(-)$1	1	53	75	11.4301

#PSSM
d : 0.19	c : 0.19	e : 0.19	" : 0.08	i : 0.05	g : 0.05	f : 0.05	! : 0.05	[ : 0.03	# : 0.03	= : 0.01	: : 0.01	
d : 0.17	c : 0.17	e : 0.17	" : 0.08	g : 0.07	i : 0.05	b : 0.05	f : 0.05	] : 0.03	! : 0.03	[ : 0.03	= : 0.01	# : 0.01	
c : 0.16	e : 0.14	d : 0.12	! : 0.08	b : 0.08	f : 0.08	" : 0.07	g : 0.07	# : 0.05	[ : 0.05	i : 0.03	= : 0.01	
e : 0.24	! : 0.16	c : 0.12	b : 0.08	# : 0.07	g : 0.07	d : 0.07	f : 0.05	a : 0.03	= : 0.01	" : 0.01	[ : 0.01	i : 0.01	
e : 0.19	d : 0.16	! : 0.12	[ : 0.12	c : 0.07	g : 0.07	# : 0.05	f : 0.05	b : 0.05	a : 0.03	= : 0.01	" : 0.01	i : 0.01	
c : 0.32	e : 0.14	d : 0.14	[ : 0.12	# : 0.05	f : 0.05	g : 0.03	! : 0.03	b : 0.03	= : 0.01	" : 0.01	i : 0.01	
b : 0.30	c : 0.28	e : 0.12	d : 0.12	f : 0.05	[ : 0.01	= : 0.01	# : 0.01	g : 0.01	i : 0.01	! : 0.01	
c : 0.28	b : 0.26	e : 0.12	d : 0.12	a : 0.05	f : 0.05	o : 0.03	= : 0.01	g : 0.01	i : 0.01	
n : 0.96	o : 0.03	
n : 0.96	o : 0.03	
n : 0.96	o : 0.03	
n : 0.96	o : 0.03	
n : 0.96	o : 0.03	
b : 0.30	c : 0.28	e : 0.12	d : 0.12	a : 0.05	f : 0.05	= : 0.01	g : 0.01	i : 0.01	
b : 0.30	c : 0.28	e : 0.12	d : 0.12	f : 0.05	] : 0.01	= : 0.01	4 : 0.01	g : 0.01	i : 0.01	2 : 0.01	
c : 0.30	] : 0.16	e : 0.14	d : 0.12	3 : 0.05	2 : 0.05	f : 0.05	4 : 0.03	= : 0.01	g : 0.01	h : 0.01	i : 0.01	
e : 0.21	d : 0.14	] : 0.10	2 : 0.08	c : 0.07	g : 0.07	f : 0.07	3 : 0.05	a : 0.05	4 : 0.03	= : 0.01	: : 0.01	h : 0.01	i : 0.01	b : 0.01	
e : 0.21	c : 0.14	2 : 0.08	b : 0.08	] : 0.08	3 : 0.07	g : 0.07	f : 0.07	4 : 0.05	i : 0.03	= : 0.01	a : 0.01	d : 0.01	h : 0.01	
c : 0.16	e : 0.14	f : 0.12	2 : 0.10	d : 0.08	b : 0.08	] : 0.07	g : 0.07	4 : 0.03	3 : 0.03	i : 0.03	= : 0.01	h : 0.01	
c : 0.17	e : 0.16	d : 0.14	2 : 0.12	f : 0.07	g : 0.07	3 : 0.07	] : 0.05	i : 0.03	b : 0.03	= : 0.01	4 : 0.01	h : 0.01	
d : 0.21	c : 0.16	e : 0.14	2 : 0.07	f : 0.07	g : 0.05	3 : 0.05	= : 0.03	b : 0.03	i : 0.03	] : 0.03	4 : 0.01	H : 0.01	F : 0.01	h : 0.01	a : 0.01	
d : 0.23	c : 0.17	f : 0.08	e : 0.08	i : 0.05	g : 0.05	b : 0.05	3 : 0.05	= : 0.03	2 : 0.03	] : 0.03	H : 0.01	F : 0.01	5 : 0.01	: : 0.01	h : 0.01	

#score	634.6954856604858
#seq	56
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF764MPF_SUGP2_CDS_m2_run2.txt

#BEAR
!!ddddcccooooooccc]dddd4	chr18:77690179-77690416(-)$1	237	59	83	12.3199
b[gggggggooooooggggggg]b	chr20:37125767-37126104(+)$1	337	292	316	11.9511
eee[eeeeeooooooeeeee333e	chr2:179417091-179417332(+)$1	241	189	213	12.3297
!dddd[cccooooooccc22dddd	chr2:179427040-179427297(+)$1	257	45	69	12.4199
eeffffffaooooooa]ffffff]	chr2:32991435-32991698(+)$1	263	234	258	11.5904
fffff[cccoooooocccffffff	chr2:240922938-240923228(-)$1	290	198	222	12.5938
c####ddddoooooodddd22ccc	chr2:179432351-179432590(+)$1	239	38	62	11.9325
eeeee[cccooooooccc]eeeee	chr2:179427441-179427669(+)$1	228	88	112	13.2029
fffff[bbbboooooobb]bb]ff	chr2:186658456-186658721(-)$1	265	47	71	9.0574
ii"""ddddoooooodddd333ii	chr3:99567343-99567595(+)$1	252	115	139	12.6336
ffff[cccaooooooa]ccc22ff	chr2:179408978-179409249(+)$1	271	5	29	12.1702
eeee[ddddooooooddddeeeee	chr2:179438544-179438817(+)$1	273	9	33	11.9007
"""ffffffooooooffffff444	chr7:141463937-141464182(+)$1	245	198	222	11.6117
gggg"""bboooooobb4444ggg	chr3:99568181-99568420(+)$1	239	152	176	12.2115
eeee"""bboooooobbeeeee::	chr3:99568744-99569040(+)$1	296	258	282	9.8382
!!ddddcccooooooccc]dddd5	chr1:91967158-91967409(+)$1	251	55	79	11.5607
eeee"""cccnnnnnccc22eeee	chr2:186660776-186661060(-)$1	284	19	43	8.3834
hhhh[ddddooooooddddhhhhh	chr22:51162450-51162706(+)$1	256	202	226	10.1340
E:gggggggoooooogggggggFF	chr2:186659698-186659961(-)$1	263	4	28	9.5495
[ccc[ddddooooooddddccc]c	chr2:179417392-179417639(+)$1	247	148	172	11.9420
f!!bbddddoooooodddd22bb]	chr7:141464316-141464582(+)$1	266	178	202	10.9318
cc[ffffffooooooffffffccc	chr3:99568622-99568845(+)$1	223	115	139	11.6268
ccc[bb[bboooooobb]bbcccc	chr2:179427974-179428276(+)$1	302	23	47	10.2995
!ccceeeeeooooooeeeee333c	chr2:179429669-179429932(+)$1	263	11	35	12.2835
fffff[cccnnnnnccc22fffff	chrX:71427139-71427413(+)$1	274	176	200	7.7190
==========mmmm==========	chr3:99569365-99569704(+)$1	339	170	194	8.2153
Feeeeecccooooooccc]eeeee	chr2:97402831-97403074(-)$1	243	179	203	12.5786
fffff[cccooooooccc]fffff	chr2:179427860-179428174(+)$1	314	60	84	12.8699
eeeee[cccooooooccc22eeee	chr2:179432154-179432421(+)$1	267	219	243	13.1188
"""ffffffooooooffffff333	chr2:186657883-186658162(-)$1	279	62	86	11.7935
==========lll==========:	chr2:179432900-179433152(+)$1	252	69	93	8.1608
eee[a[cccooooooccc]a]eee	chr3:99569627-99569901(+)$1	274	195	219	13.3913
ccc:eeeeeooooooeeeeeccc[	chr2:186658814-186659041(-)$1	227	104	128	10.5131
iiiiiicccooooooccc333iii	chr2:186655222-186655493(-)$1	271	196	220	13.7778
iiiiiiiiiooooooiiiiiiiii	chr2:179422681-179422954(+)$1	273	15	39	12.4931
ddddeeeeeooooooeeeee]ddd	chr7:141464606-141464865(+)$1	259	28	52	11.2021
eeeee[cccooooooccc22eeee	chr2:179432273-179432494(+)$1	221	100	124	13.1188
dddd!!cccooooooccc22dddd	chr2:179454384-179454690(+)$1	306	240	264	12.4375
:ffffff[aooooooa]ffffff:	chrX:71425472-71425737(+)$1	265	174	198	9.7778
####ccc[aooooooaccc4444d	chr12:133578178-133578447(+)$1	269	64	88	12.4006
ggggggg[ccclllccc]gggggg	chr2:186658299-186658542(-)$1	243	208	232	7.8123
bb!!eeeeeooooooeeeee22bb	chr3:99567783-99568032(+)$1	249	101	125	10.9739
gggg"""bboooooobb4444ggg	chr3:99568250-99568528(+)$1	278	83	107	12.2115
dddd[ddddoooooodddd]dddd	chr19:37825980-37826230(+)$1	250	215	239	11.2312
cc!!eeeeeooooooeeeee22cc	chr2:186658931-186659169(-)$1	238	53	77	11.9870

#otherMatches

#Seq PSSM
uuacuagauguaagaaucuugguu	chr18:77690179-77690416(-)$1	237	59	83	12.3199
GCCCGUGAGUCAUCUCUCAUGGCC	chr20:37125767-37126104(+)$1	337	292	316	11.9511
UGACAGGAUCACUCAGUCCUUUCU	chr2:179417091-179417332(+)$1	241	189	213	12.3297
CAGAUAUAGUUGCUUCUAGAGUCU	chr2:179427040-179427297(+)$1	257	45	69	12.4199
aauaguagcaucaaagauuacugu	chr2:32991435-32991698(+)$1	263	234	258	11.5904
cuggcugaggucgugcuugcuggg	chr2:240922938-240923228(-)$1	290	198	222	12.5938
GAUCUUCAGUAAGACCUGACACAG	chr2:179432351-179432590(+)$1	239	38	62	11.9325
CUCUUAUGGUCAAAUUCACAGGGG	chr2:179427441-179427669(+)$1	228	88	112	13.2029
AAUCUAUUCUUUCUGUGGCAAAAG	chr2:186658456-186658721(-)$1	265	47	71	9.0574
CUGGGGAGCGUCCCUGCUCAGGAG	chr3:99567343-99567595(+)$1	252	115	139	12.6336
UUCACGUUCACGGCAGCAACUCUG	chr2:179408978-179409249(+)$1	271	5	29	12.1702
AGGGUAUAGGCACCACUAUCCCUU	chr2:179438544-179438817(+)$1	273	9	33	11.9007
UGUAUUAUCUUGACUGAUAGUUUU	chr7:141463937-141464182(+)$1	245	198	222	11.6117
UAUUCAUGAAUUUUCUCUUUUAAU	chr3:99568181-99568420(+)$1	239	152	176	12.2115
GUUUUCCGUUCAUCUACAAACAUC	chr3:99568744-99569040(+)$1	296	258	282	9.8382
CUUUGCUCCCCCUGUGGAUGUAAC	chr1:91967158-91967409(+)$1	251	55	79	11.5607
AAUUAAUAGUAUUUGACUCGGAUU	chr2:186660776-186661060(-)$1	284	19	43	8.3834
GGGGAUUCCUCAGCCGGAACCUCU	chr22:51162450-51162706(+)$1	256	202	226	10.1340
UCCAGGACCUAACUUGGUUUUGCU	chr2:186659698-186659961(-)$1	263	4	28	9.5495
UCAGCAGCCUUCACUGGCUCUGUA	chr2:179417392-179417639(+)$1	247	148	172	11.9420
UCUGAUCCAUGUUCUUGGGACUCU	chr7:141464316-141464582(+)$1	266	178	202	10.9318
UGAUUGAAGCCUAUUUUUCAACAU	chr3:99568622-99568845(+)$1	223	115	139	11.6268
UGCAGGUUGUCCAUUCAUCCGCAG	chr2:179427974-179428276(+)$1	302	23	47	10.2995
CCAGUGGGGCACUUUUUCCAUACC	chr2:179429669-179429932(+)$1	263	11	35	12.2835
UCUUGAGCAGAGAAUGUCCCAAGA	chrX:71427139-71427413(+)$1	274	176	200	7.7190
UGCCAGCUUUUGUUGAAGCUGGCG	chr3:99569365-99569704(+)$1	339	170	194	8.2153
ugcacugugauuuuguacaagugu	chr2:97402831-97403074(-)$1	243	179	203	12.5786
AAUACGGAAGUUAUAUUCAGUGUU	chr2:179427860-179428174(+)$1	314	60	84	12.8699
CUGAAUUCAUAUCUUUGAUCUUCA	chr2:179432154-179432421(+)$1	267	219	243	13.1188
CUCAUUGAGCAGCUUUUCAAUAAC	chr2:186657883-186658162(-)$1	279	62	86	11.7935
AAAUUGGUAUUCUGUACCAGUUUU	chr2:179432900-179433152(+)$1	252	69	93	8.1608
UCAGCUCCUCUUUCAGGGUGGUGA	chr3:99569627-99569901(+)$1	274	195	219	13.3913
GGCACUGGCAAUGACGUCAGCAUA	chr2:186658814-186659041(-)$1	227	104	128	10.5131
GGCUUUUCUGAAACAAGAACUGAA	chr2:186655222-186655493(-)$1	271	196	220	13.7778
AGCUUUGGUUGUACCACUGGAGUU	chr2:179422681-179422954(+)$1	273	15	39	12.4931
CUGAGGCCCACAAGAGGGCCAUCA	chr7:141464606-141464865(+)$1	259	28	52	11.2021
CUGAAUUCAUAUCUUUGAUCUUCA	chr2:179432273-179432494(+)$1	221	100	124	13.1188
GCGAUAUUCUACUAUGAAGUUUGU	chr2:179454384-179454690(+)$1	306	240	264	12.4375
UGCUCUGGAAUUAGGUGCAGAGCC	chrX:71425472-71425737(+)$1	265	174	198	9.7778
CUAAUGAGCUCAAGUGUCAAGUUC	chr12:133578178-133578447(+)$1	269	64	88	12.4006
AUUGGAUAUCAAAAUGACAUCUGA	chr2:186658299-186658542(-)$1	243	208	232	7.8123
GCAUUUUUCCAUUCUGAAGAUGGC	chr3:99567783-99568032(+)$1	249	101	125	10.9739
UAUUCAUGAAUUUUCUCUUUUAAU	chr3:99568250-99568528(+)$1	278	83	107	12.2115
AGAAUGGGUCCCAUUACCUUUUCU	chr19:37825980-37826230(+)$1	250	215	239	11.2312
UUAGAAUUUUCUUUUGAAUUAAAA	chr2:186658931-186659169(-)$1	238	53	77	11.9870

#DB
..(((((((......))).)))).	chr18:77690179-77690416(-)$1	1	59	83	12.3199
(.(((((((......))))))).)	chr20:37125767-37126104(+)$1	1	292	316	11.9511
(((.(((((......)))))...)	chr2:179417091-179417332(+)$1	1	189	213	12.3297
.((((.(((......)))..))))	chr2:179427040-179427297(+)$1	1	45	69	12.4199
(((((((((......).)))))).	chr2:32991435-32991698(+)$1	1	234	258	11.5904
(((((.(((......)))))))))	chr2:240922938-240923228(-)$1	1	198	222	12.5938
(....((((......))))..)))	chr2:179432351-179432590(+)$1	1	38	62	11.9325
(((((.(((......))).)))))	chr2:179427441-179427669(+)$1	1	88	112	13.2029
(((((.((((......)).)).))	chr2:186658456-186658721(-)$1	1	47	71	9.0574
((...((((......))))...))	chr3:99567343-99567595(+)$1	1	115	139	12.6336
((((.((((......).)))..))	chr2:179408978-179409249(+)$1	1	5	29	12.1702
((((.((((......)))))))))	chr2:179438544-179438817(+)$1	1	9	33	11.9007
...((((((......))))))...	chr7:141463937-141464182(+)$1	1	198	222	11.6117
((((...((......))....)))	chr3:99568181-99568420(+)$1	1	152	176	12.2115
((((...((......)))))))..	chr3:99568744-99569040(+)$1	1	258	282	9.8382
..(((((((......))).)))).	chr1:91967158-91967409(+)$1	1	55	79	11.5607
((((...(((.....)))..))))	chr2:186660776-186661060(-)$1	1	19	43	8.3834
((((.((((......)))))))))	chr22:51162450-51162706(+)$1	1	202	226	10.1340
(.(((((((......)))))))((	chr2:186659698-186659961(-)$1	1	4	28	9.5495
.(((.((((......))))))).)	chr2:179417392-179417639(+)$1	1	148	172	11.9420
(..((((((......))))..)).	chr7:141464316-141464582(+)$1	1	178	202	10.9318
((.((((((......)))))))))	chr3:99568622-99568845(+)$1	1	115	139	11.6268
(((.((.((......)).)))))(	chr2:179427974-179428276(+)$1	1	23	47	10.2995
.((((((((......)))))...)	chr2:179429669-179429932(+)$1	1	11	35	12.2835
(((((.(((.....)))..)))))	chrX:71427139-71427413(+)$1	1	176	200	7.7190
((((((((((....))))))))))	chr3:99569365-99569704(+)$1	1	170	194	8.2153
)((((((((......))).)))))	chr2:97402831-97403074(-)$1	1	179	203	12.5786
(((((.(((......))).)))))	chr2:179427860-179428174(+)$1	1	60	84	12.8699
(((((.(((......)))..))))	chr2:179432154-179432421(+)$1	1	219	243	13.1188
...((((((......))))))...	chr2:186657883-186658162(-)$1	1	62	86	11.7935
((((((((((...)))))))))).	chr2:179432900-179433152(+)$1	1	69	93	8.1608
(((.(.(((......))).).)))	chr3:99569627-99569901(+)$1	1	195	219	13.3913
))).(((((......)))))(((.	chr2:186658814-186659041(-)$1	1	104	128	10.5131
(((((((((......)))...)))	chr2:186655222-186655493(-)$1	1	196	220	13.7778
(((((((((......)))))))))	chr2:179422681-179422954(+)$1	1	15	39	12.4931
(((((((((......))))).)))	chr7:141464606-141464865(+)$1	1	28	52	11.2021
(((((.(((......)))..))))	chr2:179432273-179432494(+)$1	1	100	124	13.1188
((((..(((......)))..))))	chr2:179454384-179454690(+)$1	1	240	264	12.4375
.((((((.(......).)))))).	chrX:71425472-71425737(+)$1	1	174	198	9.7778
....(((.(......))))....)	chr12:133578178-133578447(+)$1	1	64	88	12.4006
(((((((.(((...))).))))))	chr2:186658299-186658542(-)$1	1	208	232	7.8123
((..(((((......)))))..))	chr3:99567783-99568032(+)$1	1	101	125	10.9739
((((...((......))....)))	chr3:99568250-99568528(+)$1	1	83	107	12.2115
((((.((((......)))).))))	chr19:37825980-37826230(+)$1	1	215	239	11.2312
((..(((((......)))))..))	chr2:186658931-186659169(-)$1	1	53	77	11.9870

#PSSM
e : 0.20	f : 0.13	c : 0.11	! : 0.08	i : 0.06	g : 0.06	d : 0.06	b : 0.04	" : 0.04	= : 0.04	h : 0.02	E : 0.02	[ : 0.02	F : 0.02	: : 0.02	# : 0.02	
e : 0.22	f : 0.13	c : 0.13	d : 0.08	! : 0.06	i : 0.06	g : 0.06	# : 0.04	" : 0.04	= : 0.04	[ : 0.02	h : 0.02	: : 0.02	b : 0.02	
e : 0.20	f : 0.15	d : 0.13	g : 0.11	c : 0.08	" : 0.06	! : 0.06	# : 0.04	= : 0.04	i : 0.04	h : 0.02	[ : 0.02	
f : 0.22	e : 0.15	d : 0.13	g : 0.11	[ : 0.06	# : 0.04	c : 0.04	= : 0.04	i : 0.04	! : 0.04	" : 0.02	h : 0.02	b : 0.02	: : 0.02	
e : 0.22	f : 0.20	" : 0.11	[ : 0.11	d : 0.06	g : 0.06	b : 0.04	= : 0.04	i : 0.04	# : 0.02	a : 0.02	! : 0.02	c : 0.02	
d : 0.20	[ : 0.20	e : 0.15	f : 0.11	" : 0.08	g : 0.06	c : 0.04	= : 0.04	i : 0.04	b : 0.02	! : 0.02	
c : 0.33	d : 0.15	e : 0.13	f : 0.11	" : 0.08	g : 0.06	= : 0.04	b : 0.02	[ : 0.02	i : 0.02	
c : 0.33	d : 0.15	e : 0.13	b : 0.11	f : 0.08	[ : 0.06	g : 0.04	= : 0.04	i : 0.02	
c : 0.33	d : 0.15	e : 0.13	b : 0.11	a : 0.08	f : 0.06	g : 0.04	= : 0.04	i : 0.02	
o : 0.86	c : 0.04	= : 0.04	b : 0.02	n : 0.02	
o : 0.88	n : 0.04	m : 0.02	l : 0.02	c : 0.02	
o : 0.88	n : 0.04	l : 0.04	m : 0.02	
o : 0.88	n : 0.04	l : 0.04	m : 0.02	
o : 0.88	n : 0.04	m : 0.02	= : 0.02	l : 0.02	
o : 0.88	c : 0.04	= : 0.04	n : 0.02	
c : 0.33	d : 0.15	e : 0.13	a : 0.08	b : 0.08	f : 0.06	g : 0.04	= : 0.04	o : 0.02	i : 0.02	
c : 0.35	d : 0.15	e : 0.13	b : 0.11	] : 0.06	f : 0.06	g : 0.04	= : 0.04	i : 0.02	
c : 0.33	e : 0.15	d : 0.15	f : 0.11	g : 0.04	4 : 0.04	] : 0.04	= : 0.04	b : 0.02	2 : 0.02	i : 0.02	
] : 0.15	e : 0.15	d : 0.15	2 : 0.13	f : 0.13	g : 0.06	c : 0.04	4 : 0.04	= : 0.04	b : 0.02	3 : 0.02	i : 0.02	
e : 0.22	f : 0.17	2 : 0.15	g : 0.06	4 : 0.06	d : 0.04	b : 0.04	3 : 0.04	c : 0.04	= : 0.04	h : 0.02	a : 0.02	i : 0.02	] : 0.02	
f : 0.17	e : 0.15	d : 0.11	2 : 0.11	3 : 0.08	g : 0.06	4 : 0.06	c : 0.06	= : 0.04	] : 0.04	b : 0.02	h : 0.02	i : 0.02	
e : 0.17	d : 0.13	g : 0.11	f : 0.11	c : 0.11	3 : 0.08	2 : 0.06	4 : 0.04	= : 0.04	i : 0.04	] : 0.02	h : 0.02	b : 0.02	
f : 0.15	e : 0.15	d : 0.13	c : 0.11	3 : 0.06	i : 0.06	g : 0.06	] : 0.04	4 : 0.04	b : 0.04	= : 0.04	: : 0.02	h : 0.02	F : 0.02	
e : 0.17	c : 0.13	d : 0.11	f : 0.11	i : 0.06	g : 0.06	: : 0.06	4 : 0.04	b : 0.04	] : 0.04	5 : 0.02	h : 0.02	F : 0.02	= : 0.02	3 : 0.02	[ : 0.02	

#score	512.2607109582335
#seq	45
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_UTR_m3_run2.txt

#BEAR
gggggtttttttttttgggggg	chr16:69496521-69496774(+)$1	253	127	149	23.0022
ffffvvvvvvvvvvvvvfffff	chr2:223806436-223806717(+)$1	281	177	199	22.0482
eeeeeuuuuuuuuuuuueeeee	chr14:38059626-38059925(-)$1	299	127	149	22.5937
[ddddtttttttttttdddddd	chr22:29191212-29191436(-)$1	224	125	147	23.3519
hhhhhttttttttttthhhhhh	chr6:52364410-52364640(-)$1	230	158	180	21.2497
dddvvvvvvvvvvvvvdddd]e	chr17:64224183-64224414(-)$1	231	62	84	22.2279
!ddddtttttttttttdddd22	chr17:80559456-80559748(+)$1	292	18	40	23.2391
ccc[atttttttttttaccc22	chr12:46581258-46581555(-)$1	297	262	284	23.0695
g[ccctttttttttttccc]gg	chr10:88811089-88811350(-)$1	261	141	163	23.4755
d[ccctttttttttttcccddd	chr17:40277277-40277548(-)$1	271	151	173	23.2058
:ddddtttttttttttdddddd	chr6:64290113-64290417(+)$1	304	81	103	22.3207
hhhhhttttttttttthhhhhh	chr5:38935195-38935427(+)$1	232	191	213	21.2497
eeeevvvvvvvvvvvvveeeee	chr1:202910322-202910566(-)$1	244	5	27	22.9166
cccbbtttttttttttbb]ccc	chr19:50000441-50000673(+)$1	232	206	228	22.0451
[ddddtttttttttttdddddd	chr22:29191185-29191412(-)$1	227	101	123	23.3519
gggguuuuuuuuuuuugggggg	chr2:171819256-171819511(+)$1	255	226	248	22.2698
eeeeeuuuuuuuuuuuueeeee	chr3:128532584-128532872(+)$1	288	224	246	22.5937
d[ccctttttttttttcccddd	chr16:74486625-74486893(-)$1	268	92	114	23.2058
'ddddtttttttttttdddddd	chr5:78074231-78074541(-)$1	310	249	271	22.6745
##cccuuuuuuuuuuuuccc22	chr17:37008794-37009010(-)$1	216	112	134	22.3006
:ddddvvvvvvvvvvvvvdddd	chr14:24707990-24708295(+)$1	305	260	282	21.4763
eeeeettttttttttteeeeec	chr5:149781549-149781802(-)$1	253	10	32	23.0720
eeeevvvvvvvvvvvvveeeee	chr5:78075351-78075600(-)$1	249	46	68	22.9166
cdddduuuuuuuuuuuudddd4	chr3:50337501-50337840(-)$1	339	124	146	22.7429
c[cccvvvvvvvvvvvvvcccc	chr1:230416445-230416698(+)$1	253	77	99	22.3715
eeeevvvvvvvvvvvvveeeee	chr1:230415235-230415487(+)$1	252	43	65	22.9166
eeeeeuuuuuuuuuuuueeeee	chr18:56996850-56997100(-)$1	250	33	55	22.5937
===vvvvvvvvvvvvv======	chr2:188329850-188330113(-)$1	263	57	79	22.2117
gggggtttttttttttgggggg	chr6:34213557-34213816(+)$1	259	54	76	23.0022
#ddddtttttttttttdddd44	chr3:186791894-186792165(+)$1	271	128	150	23.3193
ff[bbtttttttttttbb]fff	chrX:118925435-118925671(-)$1	236	46	68	21.7218
f[bbvvvvvvvvvvvvvbb]ff	chr13:113538550-113538801(+)$1	251	199	221	21.7103
""ccctttttttttttccc333	chr5:135399001-135399314(+)$1	313	79	101	23.3040
gggggtttttttttttgggggg	chr12:110783731-110784023(+)$1	292	130	152	23.0022
cccvvvvvvvvvvvvvccc22f	chr12:57108284-57108528(-)$1	244	121	143	21.8092
e[ccctttttttttttccc]ee	chr12:50157871-50158091(+)$1	220	39	61	23.4430
e!!bbuuuuuuuuuuuubb22e	chr11:6635360-6635636(-)$1	276	232	254	21.2884
[ddddtttttttttttddddcc	chr12:110784740-110784993(+)$1	253	34	56	23.4144
gggvvvvvvvvvvvvvgggggg	chr19:3976365-3976587(-)$1	222	36	58	22.1783
:ddddtttttttttttdddd::	chr11:6635250-6635533(-)$1	283	248	270	20.4336
e[ccctttttttttttccc]ee	chr17:79477139-79477394(-)$1	255	30	52	23.4430
gggguuuuuuuuuuuugggggg	chr5:179157359-179157595(+)$1	236	94	116	22.2698
eeeeeuuuuuuuuuuuueeeee	chr14:31569723-31570047(-)$1	324	214	236	22.5937
+ddddtttttttttttdddd33	chr20:48251769-48252060(-)$1	291	30	52	22.9123
:ddddvvvvvvvvvvvvvdddd	chr6:30692186-30692433(+)$1	247	8	30	21.4763
fffbbuuuuuuuuuuuubb]ff	chr20:307484-307768(+)$1	284	116	138	21.2756
dddddtttttttttttdddd44	chr3:48510728-48511010(-)$1	282	108	130	23.1895
hhhvvvvvvvvvvvvvhhhhhh	chr8:17423611-17423864(+)$1	253	51	73	20.7225
[bbwwwwwwwwwwwwwwbbddd	chr1:109854024-109854263(-)$1	239	212	234	19.7896
ffffvvvvvvvvvvvvvfffff	chr14:65406003-65406293(-)$1	290	212	234	22.0482
fffffftttttttttttfffff	chr19:7115322-7115595(-)$1	273	250	272	20.3453
gggggtttttttttttgggggg	chr19:43012575-43012821(-)$1	246	42	64	23.0022
eeewwwwwwwwwwwwwweeeee	chr4:119738324-119738612(-)$1	288	124	146	20.9668
iiiivvvvvvvvvvvvviiiii	chr5:38934294-38934556(+)$1	262	59	81	22.8576
:dddduuuuuuuuuuuudddd:	chr10:102122995-102123251(+)$1	256	74	96	20.8762
"ddddtttttttttttdddd33	chr19:3976221-3976476(-)$1	255	82	104	23.5160
[ddddvvvvvvvvvvvvvdddd	chr3:186795620-186795876(+)$1	256	160	182	22.5074
ffffuuuuuuuuuuuuffffff	chr6:7882552-7882797(-)$1	245	139	161	21.4054
cdddduuuuuuuuuuuudddd]	chr13:96444172-96444404(+)$1	232	202	224	22.8075
eeeeettttttttttteeeee2	chr8:97622345-97622612(+)$1	267	187	209	22.9856
ii[bbtttttttttttbbiiii	chr12:104743542-104743808(+)$1	266	116	138	22.2937
iiiivvvvvvvvvvvvviiiii	chr11:102269174-102269434(-)$1	260	94	116	22.8576
$ddddtttttttttttdddd55	chr14:95059073-95059321(+)$1	248	53	75	21.5717
fffffuuuuuuuuuuuufffff	chr7:94296471-94296695(+)$1	224	88	110	21.6502
eeevvvvvvvvvvvvveeeee]	chr16:58559035-58559364(-)$1	329	116	138	22.2766
ffffftttttttttttffffff	chrX:131507325-131507582(-)$1	257	141	163	22.1053
eeeeettttttttttteeeee:	chr1:150938242-150938464(-)$1	222	197	219	22.1256

#otherMatches

#Seq PSSM
CGGUGUUUCCUCUCUUCACUGG	chr16:69496521-69496774(+)$1	253	127	149	23.0022
AUGAGAAUUUUUCUGAAUCAUA	chr2:223806436-223806717(+)$1	281	177	199	22.0482
AGGACCCCAACCCCUUUGUCCU	chr14:38059626-38059925(-)$1	299	127	149	22.5937
CAUCUUCCUGCCUACUGGAUGC	chr22:29191212-29191436(-)$1	224	125	147	23.3519
CUAAGAACCCCUGAAGCUUGGG	chr6:52364410-52364640(-)$1	230	158	180	21.2497
AGAGAUUUGUUAACCAUCUGCU	chr17:64224183-64224414(-)$1	231	62	84	22.2279
CUUCACCUCUCAGCACUGAAAA	chr17:80559456-80559748(+)$1	292	18	40	23.2391
GCAAGGAAACCCAGAACUGCAU	chr12:46581258-46581555(-)$1	297	262	284	23.0695
AACACAAUCAGUGCUAGUGCUG	chr10:88811089-88811350(-)$1	261	141	163	23.4755
CAUCCUCACUUUGUUCGGAGUG	chr17:40277277-40277548(-)$1	271	151	173	23.2058
AAGGCAGUUUUACCAGGCCUCA	chr6:64290113-64290417(+)$1	304	81	103	22.3207
CCACACCUCAAAAUAAUGUGGC	chr5:38935195-38935427(+)$1	232	191	213	21.2497
CCCACUUUCACACCCACUGGGC	chr1:202910322-202910566(-)$1	244	5	27	22.9166
GCCCUGCCUGCAUCUAAGUGGC	chr19:50000441-50000673(+)$1	232	206	228	22.0451
CAUCUUCCUGCCUACUGGAUGC	chr22:29191185-29191412(-)$1	227	101	123	23.3519
GACUCUCUCUAAUAAAAGUUUU	chr2:171819256-171819511(+)$1	255	226	248	22.2698
GUUAAUGCUUGUUACUUUUAAC	chr3:128532584-128532872(+)$1	288	224	246	22.5937
UCUCUCUCAUACCAACAGAACU	chr16:74486625-74486893(-)$1	268	92	114	23.2058
UCCAUUUCUAUACUUUAUGGGA	chr5:78074231-78074541(-)$1	310	249	271	22.6745
UGGCCACAGUCAAGAAAGGCAA	chr17:37008794-37009010(-)$1	216	112	134	22.3006
AUCCUGAAGAUUAUUAAAAGGA	chr14:24707990-24708295(+)$1	305	260	282	21.4763
GGCGGUCUUCAACAUCCUGCCA	chr5:149781549-149781802(-)$1	253	10	32	23.0720
CCACUUCCAAUUCUUCUGUGGC	chr5:78075351-78075600(-)$1	249	46	68	22.9166
AGACACCAUUCAUUCCAUGUCC	chr3:50337501-50337840(-)$1	339	124	146	22.7429
GUCAGAACCAAACAAUACCUGC	chr1:230416445-230416698(+)$1	253	77	99	22.3715
UUUCUUAAACUUUCCGCGAAAC	chr1:230415235-230415487(+)$1	252	43	65	22.9166
AUGGUUGUCUUUCAUUUGCCAU	chr18:56996850-56997100(-)$1	250	33	55	22.5937
uuucaccacguuaccuaggcuu	chr2:188329850-188330113(-)$1	263	57	79	22.2117
GUUCACAAACUACCUCUGGACA	chr6:34213557-34213816(+)$1	259	54	76	23.0022
ACAUCCUCAAGCCCCAGAUGCC	chr3:186791894-186792165(+)$1	271	128	150	23.3193
AGCGCCUUCUAAGCUCGUUCUU	chrX:118925435-118925671(-)$1	236	46	68	21.7218
AACGUCUUUUUAAAAAUUGCUU	chr13:113538550-113538801(+)$1	251	199	221	21.7103
GAGAUGUACUUUUUAAAUCAUG	chr5:135399001-135399314(+)$1	313	79	101	23.3040
UGGGCUCCAUCUGCCUGUCCAU	chr12:110783731-110784023(+)$1	292	130	152	23.0022
GGCAACCACACAACAAGCCCAG	chr12:57108284-57108528(-)$1	244	121	143	21.8092
CCCAAUCCCUGCAGUUUUGUGG	chr12:50157871-50158091(+)$1	220	39	61	23.4430
ACCGUUUACUCUUUCCUACCCU	chr11:6635360-6635636(-)$1	276	232	254	21.2884
CAGUAUUGUUUUGGUUUGCUAC	chr12:110784740-110784993(+)$1	253	34	56	23.4144
GCGGCCCUUCCUGCAGCGCCUG	chr19:3976365-3976587(-)$1	222	36	58	22.1783
AGGUCUUAACUUCUCUGACUAC	chr11:6635250-6635533(-)$1	283	248	270	20.4336
UCUGUGCAGGGUAUUAACGUGU	chr17:79477139-79477394(-)$1	255	30	52	23.4430
CCUGAAAAUAUGUCUGCAGGUU	chr5:179157359-179157595(+)$1	236	94	116	22.2698
CACUGGUAAAUUUCUAACAGUG	chr14:31569723-31570047(-)$1	324	214	236	22.5937
ACCCGACCUUUAUUGCUGGGAG	chr20:48251769-48252060(-)$1	291	30	52	22.9123
AGGCUUCUCAGUUCCCUUAGCC	chr6:30692186-30692433(+)$1	247	8	30	21.4763
CUGGCACCCCAUCUCCCGCGCA	chr20:307484-307768(+)$1	284	116	138	21.2756
CAGCUACCCUGGACCAAGCUAC	chr3:48510728-48511010(-)$1	282	108	130	23.1895
GAAUGAUUCCUCCUUUUUCCAU	chr8:17423611-17423864(+)$1	253	51	73	20.7225
AGCCCAAAUCUGUUACAGCUUC	chr1:109854024-109854263(-)$1	239	212	234	19.7896
AGAGCCUUGCCUUUCCCCUCUG	chr14:65406003-65406293(-)$1	290	212	234	22.0482
GAAUGGGCGUGAAUCCACCGUU	chr19:7115322-7115595(-)$1	273	250	272	20.3453
UGUGUGAACUCACCAAACACAA	chr19:43012575-43012821(-)$1	246	42	64	23.0022
GGUCCUAUAUCCACUUCAUCUG	chr4:119738324-119738612(-)$1	288	124	146	20.9668
UUGGUUCCUCUUUUCUUUCAAG	chr5:38934294-38934556(+)$1	262	59	81	22.8576
AUUGGAAAUGUACACUACCAAA	chr10:102122995-102123251(+)$1	256	74	96	20.8762
CUUGAUGCCGUUUCUUUCAAUA	chr19:3976221-3976476(-)$1	255	82	104	23.5160
AGCCCCUUACCCCUCUCUGGGC	chr3:186795620-186795876(+)$1	256	160	182	22.5074
CAUGUCUUUAGUUCCUCAUGUU	chr6:7882552-7882797(-)$1	245	139	161	21.4054
UGCCUACAAGAAAAUACAGGCA	chr13:96444172-96444404(+)$1	232	202	224	22.8075
CAGUAUUUUAAGAAGUUGCUGC	chr8:97622345-97622612(+)$1	267	187	209	22.9856
CCCUGACCGUCCCCCACAGGGC	chr12:104743542-104743808(+)$1	266	116	138	22.2937
UCUUUUUUUUUUUGGCUGGGGU	chr11:102269174-102269434(-)$1	260	94	116	22.8576
cucuguaUACAAGGAUCAGAUU	chr14:95059073-95059321(+)$1	248	53	75	21.5717
CAGGAUUUGUGUCAUUUUCCUG	chr7:94296471-94296695(+)$1	224	88	110	21.6502
GGGAAUCGCUACAACCUCCAGC	chr16:58559035-58559364(-)$1	329	116	138	22.2766
CAUUUCCAUUGAUAUAAAAUGU	chrX:131507325-131507582(-)$1	257	141	163	22.1053
CCCUGACCUCCAGAGCCAGGGU	chr1:150938242-150938464(-)$1	222	197	219	22.1256

#DB
(((((...........))))))	chr16:69496521-69496774(+)$1	1	127	149	23.0022
((((.............)))))	chr2:223806436-223806717(+)$1	1	177	199	22.0482
(((((............)))))	chr14:38059626-38059925(-)$1	1	127	149	22.5937
.((((...........))))))	chr22:29191212-29191436(-)$1	1	125	147	23.3519
(((((...........))))))	chr6:52364410-52364640(-)$1	1	158	180	21.2497
(((.............)))).)	chr17:64224183-64224414(-)$1	1	62	84	22.2279
.((((...........))))..	chr17:80559456-80559748(+)$1	1	18	40	23.2391
(((.(...........))))..	chr12:46581258-46581555(-)$1	1	262	284	23.0695
(.(((...........))).))	chr10:88811089-88811350(-)$1	1	141	163	23.4755
(.(((...........))))))	chr17:40277277-40277548(-)$1	1	151	173	23.2058
.((((...........))))((	chr6:64290113-64290417(+)$1	1	81	103	22.3207
(((((...........))))))	chr5:38935195-38935427(+)$1	1	191	213	21.2497
((((.............)))))	chr1:202910322-202910566(-)$1	1	5	27	22.9166
(((((...........)).)))	chr19:50000441-50000673(+)$1	1	206	228	22.0451
.((((...........))))))	chr22:29191185-29191412(-)$1	1	101	123	23.3519
((((............))))))	chr2:171819256-171819511(+)$1	1	226	248	22.2698
(((((............)))))	chr3:128532584-128532872(+)$1	1	224	246	22.5937
(.(((...........))))))	chr16:74486625-74486893(-)$1	1	92	114	23.2058
.((((...........))))))	chr5:78074231-78074541(-)$1	1	249	271	22.6745
..(((............)))..	chr17:37008794-37009010(-)$1	1	112	134	22.3006
.((((.............))))	chr14:24707990-24708295(+)$1	1	260	282	21.4763
(((((...........)))))(	chr5:149781549-149781802(-)$1	1	10	32	23.0720
((((.............)))))	chr5:78075351-78075600(-)$1	1	46	68	22.9166
(((((............)))).	chr3:50337501-50337840(-)$1	1	124	146	22.7429
(.(((.............))))	chr1:230416445-230416698(+)$1	1	77	99	22.3715
((((.............)))))	chr1:230415235-230415487(+)$1	1	43	65	22.9166
(((((............)))))	chr18:56996850-56997100(-)$1	1	33	55	22.5937
(((.............))))))	chr2:188329850-188330113(-)$1	1	57	79	22.2117
(((((...........))))))	chr6:34213557-34213816(+)$1	1	54	76	23.0022
.((((...........))))..	chr3:186791894-186792165(+)$1	1	128	150	23.3193
((.((...........)).)))	chrX:118925435-118925671(-)$1	1	46	68	21.7218
(.((.............)).))	chr13:113538550-113538801(+)$1	1	199	221	21.7103
..(((...........)))...	chr5:135399001-135399314(+)$1	1	79	101	23.3040
(((((...........))))))	chr12:110783731-110784023(+)$1	1	130	152	23.0022
(((.............)))..)	chr12:57108284-57108528(-)$1	1	121	143	21.8092
(.(((...........))).))	chr12:50157871-50158091(+)$1	1	39	61	23.4430
(..((............))..)	chr11:6635360-6635636(-)$1	1	232	254	21.2884
.((((...........))))))	chr12:110784740-110784993(+)$1	1	34	56	23.4144
(((.............))))))	chr19:3976365-3976587(-)$1	1	36	58	22.1783
.((((...........))))..	chr11:6635250-6635533(-)$1	1	248	270	20.4336
(.(((...........))).))	chr17:79477139-79477394(-)$1	1	30	52	23.4430
((((............))))))	chr5:179157359-179157595(+)$1	1	94	116	22.2698
(((((............)))))	chr14:31569723-31570047(-)$1	1	214	236	22.5937
.((((...........))))..	chr20:48251769-48252060(-)$1	1	30	52	22.9123
.((((.............))))	chr6:30692186-30692433(+)$1	1	8	30	21.4763
(((((............)).))	chr20:307484-307768(+)$1	1	116	138	21.2756
(((((...........))))..	chr3:48510728-48511010(-)$1	1	108	130	23.1895
(((.............))))))	chr8:17423611-17423864(+)$1	1	51	73	20.7225
.((..............)))))	chr1:109854024-109854263(-)$1	1	212	234	19.7896
((((.............)))))	chr14:65406003-65406293(-)$1	1	212	234	22.0482
((((((...........)))))	chr19:7115322-7115595(-)$1	1	250	272	20.3453
(((((...........))))))	chr19:43012575-43012821(-)$1	1	42	64	23.0022
(((..............)))))	chr4:119738324-119738612(-)$1	1	124	146	20.9668
((((.............)))))	chr5:38934294-38934556(+)$1	1	59	81	22.8576
.((((............)))).	chr10:102122995-102123251(+)$1	1	74	96	20.8762
.((((...........))))..	chr19:3976221-3976476(-)$1	1	82	104	23.5160
.((((.............))))	chr3:186795620-186795876(+)$1	1	160	182	22.5074
((((............))))))	chr6:7882552-7882797(-)$1	1	139	161	21.4054
(((((............)))).	chr13:96444172-96444404(+)$1	1	202	224	22.8075
(((((...........))))).	chr8:97622345-97622612(+)$1	1	187	209	22.9856
((.((...........))))))	chr12:104743542-104743808(+)$1	1	116	138	22.2937
((((.............)))))	chr11:102269174-102269434(-)$1	1	94	116	22.8576
.((((...........))))..	chr14:95059073-95059321(+)$1	1	53	75	21.5717
(((((............)))))	chr7:94296471-94296695(+)$1	1	88	110	21.6502
(((.............))))).	chr16:58559035-58559364(-)$1	1	116	138	22.2766
(((((...........))))))	chrX:131507325-131507582(-)$1	1	141	163	22.1053
(((((...........))))).	chr1:150938242-150938464(-)$1	1	197	219	22.1256

#PSSM
e : 0.22	f : 0.13	g : 0.11	c : 0.08	[ : 0.07	: : 0.07	d : 0.05	h : 0.04	i : 0.04	# : 0.02	" : 0.02	! : 0.01	' : 0.01	= : 0.01	+ : 0.01	$ : 0.01	
d : 0.28	e : 0.17	f : 0.11	g : 0.10	[ : 0.10	h : 0.04	c : 0.04	i : 0.04	# : 0.01	= : 0.01	" : 0.01	! : 0.01	b : 0.01	
d : 0.28	e : 0.17	c : 0.16	g : 0.10	f : 0.10	h : 0.04	[ : 0.02	b : 0.02	i : 0.02	= : 0.01	! : 0.01	
d : 0.26	e : 0.14	c : 0.11	g : 0.08	f : 0.08	v : 0.08	b : 0.08	h : 0.02	w : 0.02	i : 0.02	[ : 0.01	
d : 0.26	v : 0.20	c : 0.11	e : 0.10	b : 0.07	g : 0.05	u : 0.04	f : 0.04	h : 0.02	w : 0.02	a : 0.01	
t : 0.47	v : 0.26	u : 0.20	w : 0.02	f : 0.01	
t : 0.49	v : 0.26	u : 0.20	w : 0.02	
t : 0.49	v : 0.26	u : 0.20	w : 0.02	
t : 0.49	v : 0.26	u : 0.20	w : 0.02	
t : 0.49	v : 0.26	u : 0.20	w : 0.02	
t : 0.49	v : 0.26	u : 0.20	w : 0.02	
t : 0.49	v : 0.26	u : 0.20	w : 0.02	
t : 0.49	v : 0.26	u : 0.20	w : 0.02	
t : 0.49	v : 0.26	u : 0.20	w : 0.02	
t : 0.49	v : 0.26	u : 0.20	w : 0.02	
t : 0.49	v : 0.26	u : 0.20	w : 0.02	
d : 0.19	v : 0.17	u : 0.16	g : 0.10	c : 0.10	e : 0.05	h : 0.04	b : 0.04	w : 0.02	f : 0.02	a : 0.01	= : 0.01	t : 0.01	
d : 0.23	e : 0.17	c : 0.13	g : 0.10	b : 0.10	f : 0.08	v : 0.05	h : 0.04	i : 0.02	= : 0.01	
d : 0.28	e : 0.17	c : 0.14	g : 0.10	f : 0.08	b : 0.05	h : 0.04	i : 0.04	] : 0.02	= : 0.01	
d : 0.32	e : 0.17	g : 0.10	f : 0.10	] : 0.07	c : 0.05	h : 0.04	i : 0.04	2 : 0.02	= : 0.01	3 : 0.01	
e : 0.20	d : 0.19	f : 0.13	g : 0.11	2 : 0.07	h : 0.04	c : 0.04	3 : 0.04	i : 0.04	4 : 0.02	] : 0.01	= : 0.01	: : 0.01	5 : 0.01	
e : 0.17	f : 0.14	d : 0.14	g : 0.11	2 : 0.05	c : 0.05	h : 0.04	4 : 0.04	3 : 0.04	: : 0.04	i : 0.04	] : 0.02	= : 0.01	5 : 0.01	

#score	1497.1942529445555
#seq	67
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF788UFQ_SRSF1_CDS_m3_run2.txt

#BEAR
!!ffffffqqqqqqqqffffff2	chr2:131883226-131883505(+)$1	279	197	220	14.6522
:gggggggqqqqqqqqggggggg	chr7:129098455-129098721(+)$1	266	123	146	14.6756
ddddddbbqqqqqqqqbb]dddd	chr2:38829571-38829833(-)$1	262	117	140	13.6313
"""eeeeeqqqqqqqqeeeee44	chr12:132446302-132446605(+)$1	303	180	203	16.1532
f####cccqqqqqqqqccc4444	chr16:257973-258293(-)$1	320	117	140	16.1567
gggggg[aqqqqqqqqa333ggg	chr1:78429693-78429946(-)$1	253	178	201	15.5495
cccc[cccqqqqqqqqccc]ccc	chr3:10191434-10191685(+)$1	251	28	51	15.8562
b[bb[cccqqqqqqqqccc22bb	chr11:62287298-62287605(-)$1	307	231	254	14.6310
###eeeeeqqqqqqqqeeeeeff	chr4:17625121-17625394(+)$1	273	21	44	15.6895
:gggggggqqqqqqqqggggggg	chr3:9862174-9862495(+)$1	321	252	275	14.6756
dddd!!bbqqqqqqqqbb22ddd	chr14:102493921-102494186(+)$1	265	68	91	13.6749
d####cccqqqqqqqqccc333d	chr12:123651100-123651364(-)$1	264	74	97	16.3838
bb!!ddddqqqqqqqqdddd]bb	chr1:52882206-52882452(+)$1	246	103	126	14.7309
!!ffffffqqqqqqqqffffff2	chr19:10401664-10401912(+)$1	248	6	29	14.6522
:gggggggqqqqqqqqggggggg	chr16:89349376-89349645(-)$1	269	47	70	14.6756
"a[eeeeeqqqqqqqqeeeee]a	chr3:32804180-32804474(+)$1	294	220	243	15.9823
d[dddd[aqqqqqqqqa22dddd	chr17:46052786-46053043(+)$1	257	47	70	14.3689
ddd!!cccqqqqqqqqcccdddd	chr1:23383872-23384116(+)$1	244	147	170	15.2739
c[ffffffqqqqqqqqffffffc	chr21:45745772-45746043(+)$1	271	131	154	14.5352
gggggg[aqqqqqqqqagggggg	chr7:99158051-99158332(+)$1	281	168	191	15.4964
c[ffffffqqqqqqqqffffff]	chr3:152052874-152053154(+)$1	280	96	119	14.5679
h!!eeeeeqqqqqqqqeeeee22	chr8:95541325-95541578(-)$1	253	78	101	15.7269
:ccc[cccqqqqqqqqccc]ccc	chr8:117862759-117863024(-)$1	265	53	76	15.0523
ff[eeeeeqqqqqqqqeeeee22	chr11:118919349-118919605(-)$1	256	144	167	15.4917
d!!eeeeeqqqqqqqqeeeee]d	chr5:176965937-176966174(-)$1	237	66	89	15.9890
hhhh[cccqqqqqqqqccc]hhh	chr15:59191830-59192129(-)$1	299	145	168	14.5118
bb!!ddddqqqqqqqqdddd333	chr7:12395738-12396021(-)$1	283	160	183	15.7415
#bbeeeeeqqqqqqqqeeeee]b	chr17:5445174-5445445(-)$1	271	181	204	15.0201
iiiiiiiiqqqqqqqqiiiiiii	chr1:24972381-24972631(+)$1	250	165	188	15.4259
c!!eeeeeqqqqqqqqeeeee22	chr12:116714762-116715062(-)$1	300	163	186	15.9961
####ddddqqqqqqqqdddd333	chr3:195792295-195792573(-)$1	278	126	149	16.0983
$$$$ddddqqqqqqqqdddd22g	chrX:64737798-64738078(-)$1	280	113	136	14.7120
ddddddddqqqqqqqqdddd]dd	chr11:6499981-6500263(-)$1	282	153	176	14.5104
bb!!ddddqqqqqqqqdddd22b	chr1:36501710-36501976(+)$1	266	82	105	14.9265
d!!eeeeeqqqqqqqqeeeee22	chr2:74684391-74684693(+)$1	302	107	130	15.9286
bb!!ddddqqqqqqqqdddd333	chr7:12395702-12395938(-)$1	236	77	100	15.7415
eeee[cccqqqqqqqqccceeee	chr8:11667240-11667488(+)$1	248	2	25	15.3702
dddd[cccqqqqqqqqccc]ddd	chr22:19898777-19899073(-)$1	296	5	28	15.1887
eee[ddddqqqqqqqqdddd]ee	chr7:99954271-99954568(+)$1	297	108	131	14.7258
bb[eeeeeqqqqqqqqeeeee]b	chr7:12443176-12443453(-)$1	277	147	170	15.3594
[gggggggqqqqqqqqggggggg	chrX:154009846-154010129(-)$1	283	115	138	15.5286
&gggggggqqqqqqqqggggggg	chr11:14515661-14516012(-)$1	351	71	94	15.0017
========qqqqqqqq=======	chr6:79770117-79770383(-)$1	266	233	256	15.9208
[ccc[cccqqqqqqqqccc]ccc	chr22:45723654-45723962(+)$1	308	162	185	15.9054
c[ccccccqqqqqqqqccc]ccc	chr19:11200059-11200333(+)$1	274	109	132	15.8015
dd[a[cccqqqqqqqqccca]dd	chr1:150528613-150528871(+)$1	258	34	57	15.6672
ffffff[aqqqqqqqqa]fffff	chr19:7711944-7712206(+)$1	262	19	42	14.2535
ddd"""bbqqqqqqqqbb22ddd	chr19:12886141-12886443(-)$1	302	189	212	13.6436
dd####bbqqqqqqqqbb4444d	chr19:5593773-5594113(-)$1	340	91	114	14.4784
f[dddd[aqqqqqqqqa]ddddf	chr1:22109203-22109513(-)$1	310	232	255	14.6284
:ccc[cccqqqqqqqqcccccc:	chr10:15902040-15902368(-)$1	328	270	293	13.9639
####ddddqqqqqqqqdddd444	chr18:9216661-9217006(+)$1	345	240	263	15.7842
ffffddddqqqqqqqqdddd444	chr15:63340673-63341000(+)$1	327	79	102	14.9244
e[ffffffqqqqqqqqffffff2	chr11:35685028-35685304(+)$1	276	191	214	14.3975
"gggggggqqqqqqqqggggggg	chr13:107220126-107220448(-)$1	322	281	304	15.5758
"""eeeeeqqqqqqqqeeeee]f	chr7:127975496-127975773(-)$1	277	178	201	16.0257
ee"""cccqqqqqqqqccc]eee	chr11:65293552-65293806(+)$1	254	72	95	15.6887
eeeeeeeeqqqqqqqqeeeee]e	chr3:196214216-196214494(-)$1	278	15	38	15.1844
dd[a[cccqqqqqqqqccc]a]d	chr11:377060-377321(+)$1	261	38	61	16.0348
ccc[ddddqqqqqqqqdddd]cc	chr2:38975614-38975888(-)$1	274	100	123	15.2444
cc[a!!bbqqqqqqqqbb22a]c	chr9:131830409-131830691(+)$1	282	94	117	14.7775
ggeeeeeaqqqqqqqqa]eeeee	chr12:98987873-98988130(+)$1	257	223	246	15.1235
========qqqqqqqq=======	chr1:11078787-11079031(+)$1	244	139	162	15.9208
ffff!!bbqqqqqqqqbb22fff	chr20:33470573-33470841(+)$1	268	25	48	13.7831
ffff[cccqqqqqqqqccc333f	chr19:58696969-58697340(+)$1	371	50	73	15.8131
=====cccqqqqqqqqccccccm	chr11:129762521-129762789(-)$1	268	175	198	15.2933
d!!eeeeeqqqqqqqqeeeee22	chr17:80156084-80156334(-)$1	250	192	215	15.9286
bb[eeeeeqqqqqqqqeeeeebb	chr6:16130696-16131057(+)$1	361	110	133	14.8624
$$ccc!!aqqqqqqqqa22ccc4	chr2:145274718-145275013(-)$1	295	166	189	14.5781

#otherMatches

#Seq PSSM
AAGGUCCACAUGCCAAUGGACUG	chr2:131883226-131883505(+)$1	279	197	220	14.6522
AGAUGAGCAGGAACAAGUUCAUC	chr7:129098455-129098721(+)$1	266	123	146	14.6756
ACGAGAGCCAGGCCAAGCGUCUC	chr2:38829571-38829833(-)$1	262	117	140	13.6313
AGGUUAUCAAUGACGAGGUAAGA	chr12:132446302-132446605(+)$1	303	180	203	16.1532
CUUGGAGUCCUUUAUUGCUGAAU	chr16:257973-258293(-)$1	320	117	140	16.1567
AGACCUUCUUCGAAGUGUUCAGG	chr1:78429693-78429946(-)$1	253	178	201	15.5495
CCUUCCAGUGUAUACUCUGAAAG	chr3:10191434-10191685(+)$1	251	28	51	15.8562
AUGCCUGAAAUAAAUAUCAAAGC	chr11:62287298-62287605(-)$1	307	231	254	14.6310
AUUGUUAGCCUCUUAACUAACCA	chr4:17625121-17625394(+)$1	273	21	44	15.6895
UGAGUCCCCUGCAGCUGGGACUU	chr3:9862174-9862495(+)$1	321	252	275	14.6756
CCUUGAUGACGCAGUGCAAAGAG	chr14:102493921-102494186(+)$1	265	68	91	13.6749
GGUGCAGAGUAUUCCAUCUUUAC	chr12:123651100-123651364(-)$1	264	74	97	16.3838
GCCAUUUCAGGUCUAAGAAGAGC	chr1:52882206-52882452(+)$1	246	103	126	14.7309
AACCCUUGACUCGACAUAGGGGC	chr19:10401664-10401912(+)$1	248	6	29	14.6522
AUCUUCACAGAUGAGAGUGAGGA	chr16:89349376-89349645(-)$1	269	47	70	14.6756
CCCUCCUGUCAUAAUUCAGGAUG	chr3:32804180-32804474(+)$1	294	220	243	15.9823
AUGUUUUCUUCAAUCUGUUGGAC	chr17:46052786-46053043(+)$1	257	47	70	14.3689
AUGUAGCUGAUCUUGGAGCCAUG	chr1:23383872-23384116(+)$1	244	147	170	15.2739
CUGUGGUUGUCGGAGAAGCUGCG	chr21:45745772-45746043(+)$1	271	131	154	14.5352
CAAGGGUCCAGUUUCAGUCUUUG	chr7:99158051-99158332(+)$1	281	168	191	15.4964
UGUAUCUUAUCUAUGGAAGAUAA	chr3:152052874-152053154(+)$1	280	96	119	14.5679
UUCUGUUCCCCAGGAAGGGCAAU	chr8:95541325-95541578(-)$1	253	78	101	15.7269
AGAGCUUCCCCCAGAAGAACCUC	chr8:117862759-117863024(-)$1	265	53	76	15.0523
CUUGCCAGAGGAUAAGCUGGCUC	chr11:118919349-118919605(-)$1	256	144	167	15.4917
UGCUGUGUCACCGGGAACGCAAA	chr5:176965937-176966174(-)$1	237	66	89	15.9890
CAGGCUGAAGAUGCCAUCACUCU	chr15:59191830-59192129(-)$1	299	145	168	14.5118
GCCUGGCUUCCAUGGCAGCCUUU	chr7:12395738-12396021(-)$1	283	160	183	15.7415
ACCUGAGCUUCAAUGUGCUCACG	chr17:5445174-5445445(-)$1	271	181	204	15.0201
GAAUGCCUAGAAAAAAAGGUAUU	chr1:24972381-24972631(+)$1	250	165	188	15.4259
GCCUGGAGGAUUGUCACUCCAAC	chr12:116714762-116715062(-)$1	300	163	186	15.9961
UGACUGGAAAACAGACUCUACAU	chr3:195792295-195792573(-)$1	278	126	149	16.0983
CUUUCUCUACAGGGCAAGAGUCC	chrX:64737798-64738078(-)$1	280	113	136	14.7120
UGCUGCGUGAGACGAAGCGCAAG	chr11:6499981-6500263(-)$1	282	153	176	14.5104
GCAACCAGUGAUCUUUUUGGGAG	chr1:36501710-36501976(+)$1	266	82	105	14.9265
UAUGCUGCCGCUGCCUGUAGCUG	chr2:74684391-74684693(+)$1	302	107	130	15.9286
GCCUGGCUUCCAUGGCAGCCUUU	chr7:12395702-12395938(-)$1	236	77	100	15.7415
AGUGUGGAAAAGAAGGUCCCGCU	chr8:11667240-11667488(+)$1	248	2	25	15.3702
AGCUCUGCUUGAUUCUGCAAAGC	chr22:19898777-19899073(-)$1	296	5	28	15.1887
UCCUCAGGAUCUCGAACCUGCGG	chr7:99954271-99954568(+)$1	297	108	131	14.7258
AUGUUCCUGGCCUGGGGGGAAGG	chr7:12443176-12443453(-)$1	277	147	170	15.3594
AGGAGAUGACGAGGAACAUCUCU	chrX:154009846-154010129(-)$1	283	115	138	15.5286
AUCAUUAUGAUUCUGAAUGGUGA	chr11:14515661-14516012(-)$1	351	71	94	15.0017
GAGCUUUUGAAAAUGAAAAGGUU	chr6:79770117-79770383(-)$1	266	233	256	15.9208
AGUCGAUCCUCAGCCUGAUGGAC	chr22:45723654-45723962(+)$1	308	162	185	15.9054
UAGGACACAGCAGGUCGUGAUCC	chr19:11200059-11200333(+)$1	274	109	132	15.8015
GUGAUGGGAUCCUUGGCUCUGGC	chr1:150528613-150528871(+)$1	258	34	57	15.6672
GCCCCUGAAUACCCCGUGGGGGG	chr19:7711944-7712206(+)$1	262	19	42	14.2535
GACAAAGCUGAGCUAUGCGGGUC	chr19:12886141-12886443(-)$1	302	189	212	13.6436
GUGAGCGCAGGAAGGAGCAGGAG	chr19:5593773-5594113(-)$1	340	91	114	14.4784
CGCCGGACCUUGGAAAGCCCGGG	chr1:22109203-22109513(-)$1	310	232	255	14.6284
CCAGUCGCCGUGCUCAGCGCUGA	chr10:15902040-15902368(-)$1	328	270	293	13.9639
AGUAUGAUAGAAAAAAAUCAAUA	chr18:9216661-9217006(+)$1	345	240	263	15.7842
CGCCCGCCUACCGUCCGGCGCGA	chr15:63340673-63341000(+)$1	327	79	102	14.9244
UACCUAUUGCCAGGAAGAUAGGC	chr11:35685028-35685304(+)$1	276	191	214	14.3975
AGGAGCGCGUGCGGAAGCGUUCC	chr13:107220126-107220448(-)$1	322	281	304	15.5758
UUUGUUUGGAUUUUCAUAAAUGU	chr7:127975496-127975773(-)$1	277	178	201	16.0257
AGCCUCAUCCACAACAAUGUCUG	chr11:65293552-65293806(+)$1	254	72	95	15.6887
AAGGAUUGCUCUUUAUUAAUCAC	chr3:196214216-196214494(-)$1	278	15	38	15.1844
CCGCGUCGGAGGACAGCGAGGAG	chr11:377060-377321(+)$1	261	38	61	16.0348
UCUAGAUCACAUUCUCGAUCCAG	chr2:38975614-38975888(-)$1	274	100	123	15.2444
GUGCUGGACUUCAUCCUCAUGGA	chr9:131830409-131830691(+)$1	282	94	117	14.7775
GCCUUCCCUCAAGGGCGUGGAAG	chr12:98987873-98988130(+)$1	257	223	246	15.1235
UAAGGUACUUGCGUCUGUGCUUU	chr1:11078787-11079031(+)$1	244	139	162	15.9208
UUCUGGGGAGACAUUGCCAAGGA	chr20:33470573-33470841(+)$1	268	25	48	13.7831
GUCUUUCUUUUGUCGUGGAUGCG	chr19:58696969-58697340(+)$1	371	50	73	15.8131
AGGAUGUGAGUAGUAACACGGUU	chr11:129762521-129762789(-)$1	268	175	198	15.2933
CACUGUGAAACUGAAAUCAUAUA	chr17:80156084-80156334(-)$1	250	192	215	15.9286
UCAUAGAAGUUGACUAUUUUGGA	chr6:16130696-16131057(+)$1	361	110	133	14.8624
ACGGUAAGAAGCAGCCCGAACCA	chr2:145274718-145275013(-)$1	295	166	189	14.5781

#DB
..((((((........)))))).	chr2:131883226-131883505(+)$1	1	197	220	14.6522
.(((((((........)))))))	chr7:129098455-129098721(+)$1	1	123	146	14.6756
))((((((........)).))))	chr2:38829571-38829833(-)$1	1	117	140	13.6313
...(((((........)))))..	chr12:132446302-132446605(+)$1	1	180	203	16.1532
(....(((........)))....	chr16:257973-258293(-)$1	1	117	140	16.1567
((((((.(........)...)))	chr1:78429693-78429946(-)$1	1	178	201	15.5495
)(((.(((........))).)))	chr3:10191434-10191685(+)$1	1	28	51	15.8562
(.((.(((........)))..))	chr11:62287298-62287605(-)$1	1	231	254	14.6310
...(((((........)))))))	chr4:17625121-17625394(+)$1	1	21	44	15.6895
.(((((((........)))))))	chr3:9862174-9862495(+)$1	1	252	275	14.6756
((((..((........))..)))	chr14:102493921-102494186(+)$1	1	68	91	13.6749
(....(((........)))...)	chr12:123651100-123651364(-)$1	1	74	97	16.3838
((..((((........)))).))	chr1:52882206-52882452(+)$1	1	103	126	14.7309
..((((((........)))))).	chr19:10401664-10401912(+)$1	1	6	29	14.6522
.(((((((........)))))))	chr16:89349376-89349645(-)$1	1	47	70	14.6756
.(.(((((........))))).)	chr3:32804180-32804474(+)$1	1	220	243	15.9823
(.((((.(........)..))))	chr17:46052786-46053043(+)$1	1	47	70	14.3689
(((..(((........)))))))	chr1:23383872-23384116(+)$1	1	147	170	15.2739
(.((((((........)))))))	chr21:45745772-45746043(+)$1	1	131	154	14.5352
((((((.(........)))))))	chr7:99158051-99158332(+)$1	1	168	191	15.4964
(.((((((........)))))).	chr3:152052874-152053154(+)$1	1	96	119	14.5679
(..(((((........)))))..	chr8:95541325-95541578(-)$1	1	78	101	15.7269
.(((.(((........))).)))	chr8:117862759-117863024(-)$1	1	53	76	15.0523
((.(((((........)))))..	chr11:118919349-118919605(-)$1	1	144	167	15.4917
(..(((((........))))).)	chr5:176965937-176966174(-)$1	1	66	89	15.9890
((((.(((........))).)))	chr15:59191830-59192129(-)$1	1	145	168	14.5118
((..((((........))))...	chr7:12395738-12396021(-)$1	1	160	183	15.7415
.(((((((........))))).)	chr17:5445174-5445445(-)$1	1	181	204	15.0201
((((((((........)))))))	chr1:24972381-24972631(+)$1	1	165	188	15.4259
(..(((((........)))))..	chr12:116714762-116715062(-)$1	1	163	186	15.9961
....((((........))))...	chr3:195792295-195792573(-)$1	1	126	149	16.0983
....((((........))))..)	chrX:64737798-64738078(-)$1	1	113	136	14.7120
((((((((........)))).))	chr11:6499981-6500263(-)$1	1	153	176	14.5104
((..((((........))))..)	chr1:36501710-36501976(+)$1	1	82	105	14.9265
(..(((((........)))))..	chr2:74684391-74684693(+)$1	1	107	130	15.9286
((..((((........))))...	chr7:12395702-12395938(-)$1	1	77	100	15.7415
((((.(((........)))))))	chr8:11667240-11667488(+)$1	1	2	25	15.3702
((((.(((........))).)))	chr22:19898777-19899073(-)$1	1	5	28	15.1887
(((.((((........)))).))	chr7:99954271-99954568(+)$1	1	108	131	14.7258
((.(((((........))))).)	chr7:12443176-12443453(-)$1	1	147	170	15.3594
.(((((((........)))))))	chrX:154009846-154010129(-)$1	1	115	138	15.5286
.(((((((........)))))))	chr11:14515661-14516012(-)$1	1	71	94	15.0017
((((((((........)))))))	chr6:79770117-79770383(-)$1	1	233	256	15.9208
.(((.(((........))).)))	chr22:45723654-45723962(+)$1	1	162	185	15.9054
(.((((((........))).)))	chr19:11200059-11200333(+)$1	1	109	132	15.8015
((.(.(((........)))).))	chr1:150528613-150528871(+)$1	1	34	57	15.6672
((((((.(........).)))))	chr19:7711944-7712206(+)$1	1	19	42	14.2535
(((...((........))..)))	chr19:12886141-12886443(-)$1	1	189	212	13.6436
((....((........))....)	chr19:5593773-5594113(-)$1	1	91	114	14.4784
(.((((.(........).)))))	chr1:22109203-22109513(-)$1	1	232	255	14.6284
.(((.(((........)))))).	chr10:15902040-15902368(-)$1	1	270	293	13.9639
....((((........))))...	chr18:9216661-9217006(+)$1	1	240	263	15.7842
((((((((........))))...	chr15:63340673-63341000(+)$1	1	79	102	14.9244
(.((((((........)))))).	chr11:35685028-35685304(+)$1	1	191	214	14.3975
.(((((((........)))))))	chr13:107220126-107220448(-)$1	1	281	304	15.5758
...(((((........))))).)	chr7:127975496-127975773(-)$1	1	178	201	16.0257
((...(((........))).)))	chr11:65293552-65293806(+)$1	1	72	95	15.6887
((((((((........))))).)	chr3:196214216-196214494(-)$1	1	15	38	15.1844
((.(.(((........))).).)	chr11:377060-377321(+)$1	1	38	61	16.0348
(((.((((........)))).))	chr2:38975614-38975888(-)$1	1	100	123	15.2444
((.(..((........))..).)	chr9:131830409-131830691(+)$1	1	94	117	14.7775
((((((((........).)))))	chr12:98987873-98988130(+)$1	1	223	246	15.1235
((((((((........)))))))	chr1:11078787-11079031(+)$1	1	139	162	15.9208
((((..((........))..)))	chr20:33470573-33470841(+)$1	1	25	48	13.7831
((((.(((........)))...)	chr19:58696969-58697340(+)$1	1	50	73	15.8131
)))))(((........)))(((.	chr11:129762521-129762789(-)$1	1	175	198	15.2933
(..(((((........)))))..	chr17:80156084-80156334(-)$1	1	192	215	15.9286
((.(((((........)))))))	chr6:16130696-16131057(+)$1	1	110	133	14.8624
..(((..(........)..))).	chr2:145274718-145275013(-)$1	1	166	189	14.5781

#PSSM
d : 0.20	f : 0.10	c : 0.10	b : 0.10	: : 0.07	e : 0.07	" : 0.05	# : 0.05	g : 0.04	= : 0.04	! : 0.02	h : 0.02	$ : 0.02	[ : 0.02	i : 0.01	& : 0.01	
g : 0.13	d : 0.13	! : 0.10	[ : 0.10	b : 0.10	c : 0.08	# : 0.07	f : 0.07	e : 0.05	= : 0.04	" : 0.02	$ : 0.02	a : 0.01	h : 0.01	i : 0.01	
f : 0.13	! : 0.13	g : 0.11	d : 0.11	c : 0.10	[ : 0.10	# : 0.08	e : 0.05	" : 0.04	= : 0.04	b : 0.02	h : 0.01	i : 0.01	$ : 0.01	
e : 0.23	f : 0.13	g : 0.11	d : 0.08	c : 0.08	# : 0.07	! : 0.07	= : 0.04	a : 0.04	[ : 0.02	" : 0.02	b : 0.01	h : 0.01	i : 0.01	$ : 0.01	
e : 0.21	d : 0.20	[ : 0.15	g : 0.11	f : 0.08	! : 0.05	# : 0.04	= : 0.04	c : 0.02	" : 0.02	i : 0.01	
c : 0.24	e : 0.21	d : 0.20	g : 0.11	f : 0.08	! : 0.05	= : 0.02	i : 0.01	" : 0.01	# : 0.01	
c : 0.24	e : 0.21	d : 0.15	g : 0.08	b : 0.08	f : 0.07	[ : 0.07	= : 0.02	i : 0.01	! : 0.01	
c : 0.24	e : 0.20	d : 0.15	a : 0.10	g : 0.08	b : 0.08	f : 0.07	= : 0.02	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.24	e : 0.20	d : 0.15	a : 0.10	g : 0.08	b : 0.08	f : 0.07	= : 0.02	i : 0.01	
c : 0.24	e : 0.20	d : 0.15	g : 0.10	b : 0.08	f : 0.07	] : 0.04	2 : 0.02	= : 0.02	3 : 0.01	i : 0.01	
c : 0.24	e : 0.21	d : 0.17	g : 0.10	f : 0.08	2 : 0.08	= : 0.02	] : 0.01	3 : 0.01	i : 0.01	4 : 0.01	
e : 0.23	d : 0.21	] : 0.11	g : 0.10	f : 0.08	2 : 0.07	3 : 0.04	c : 0.04	4 : 0.02	= : 0.02	i : 0.01	a : 0.01	
e : 0.24	g : 0.11	f : 0.10	d : 0.10	c : 0.10	3 : 0.07	] : 0.07	4 : 0.05	2 : 0.04	= : 0.02	a : 0.02	h : 0.01	i : 0.01	
d : 0.13	f : 0.11	g : 0.11	c : 0.11	] : 0.11	2 : 0.10	4 : 0.07	3 : 0.07	e : 0.05	b : 0.04	= : 0.02	h : 0.01	i : 0.01	
d : 0.17	g : 0.13	2 : 0.11	c : 0.10	b : 0.08	f : 0.08	4 : 0.07	e : 0.07	3 : 0.04	= : 0.02	a : 0.01	] : 0.01	h : 0.01	i : 0.01	: : 0.01	m : 0.01	

#score	1047.2663435842965
#seq	69
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF105AKX_HNRNPC_transcript_m2_run1.txt

#BEAR
eeeeevvvvvvvvvvvvveeee	chr20:47763070-47763345(-)$1	275	85	107	23.1025
ggg[ccctttttttttttccc2	chr10:80838385-80838642(+)$1	257	15	37	19.2939
[cccwwwwwwwwwwwwwwccc]	chrX:70763553-70763771(+)$1	218	194	216	21.2117
=====^^^^^^^^^^^^^^^^^	chr2:160605402-160605693(+)$1	291	57	79	17.6155
=====^^^^^^^^^^^^^^^^^	chr1:21394707-21394974(-)$1	267	81	103	17.6155
[dddd^^^^^^^^^^^^^^^^^	chr16:71795569-71795824(-)$1	255	82	104	17.3145
eeeeeuuuuuuuuuuuueeeee	chr2:188369340-188369628(-)$1	288	89	111	21.1584
!ddddvvvvvvvvvvvvvdddd	chr20:33007203-33007463(+)$1	260	52	74	22.6247
eeeeevvvvvvvvvvvvveeee	chr10:88824879-88825135(-)$1	256	230	252	23.1025
gggggyyyyyyyyyyyyyyyyg	chr1:62151351-62151619(-)$1	268	233	255	19.8092
fff[ccctttttttttttcccf	chr17:56073695-56073947(-)$1	252	35	57	19.0051
fffddddtttttttttttdddd	chr2:27257383-27257643(+)$1	260	228	250	18.4567
gggggvvvvvvvvvvvvvgggg	chr16:75400906-75401166(-)$1	260	54	76	22.8373
eeeeevvvvvvvvvvvvveeee	chr14:21684112-21684360(-)$1	248	143	165	23.1025
:ddddvvvvvvvvvvvvvdddd	chr14:36109037-36109249(-)$1	212	178	200	21.4936
hhhhhwwwwwwwwwwwwwwhhh	chr2:223747425-223747667(+)$1	242	54	76	20.2060
ee[cccuuuuuuuuuuuuccc]	chr17:3510093-3510349(-)$1	256	117	139	21.3667
eeeeeuuuuuuuuuuuueeeee	chr6:37820407-37820619(+)$1	212	84	106	21.1584
ggggguuuuuuuuuuuuggggg	chr20:30998940-30999192(+)$1	252	23	45	20.7666
!!cccwwwwwwwwwwwwwwccc	chr14:34916321-34916534(-)$1	213	160	182	21.7339
fffffvvvvvvvvvvvvvffff	chr2:242697797-242698056(+)$1	259	94	116	21.7452
[dddd^^^^^^^^^^^^^^^^^	chr1:21488318-21488555(-)$1	237	70	92	17.3145
$ddddvvvvvvvvvvvvvdddd	chr10:79798372-79798603(+)$1	231	34	56	22.2670
gggg[attttttttttta]ggg	chr16:87396587-87396797(-)$1	210	35	57	20.1464
[ddddvvvvvvvvvvvvvdddd	chr15:68415300-68415574(+)$1	274	198	220	22.6743
""ccctttttttttttccceee	chr15:66058427-66058663(-)$1	236	18	40	18.5952
eeeeevvvvvvvvvvvvveeee	chr2:173300263-173300543(+)$1	280	191	213	23.1025
eeeeevvvvvvvvvvvvveeee	chr8:82589081-82589319(-)$1	238	22	44	23.1025
gggggvvvvvvvvvvvvvgggg	chr2:171790466-171790745(+)$1	279	126	148	22.8373
iiiii^^^^^^^^^^^^^^^^^	chr17:59217852-59218106(+)$1	254	9	31	17.5547
eeeee^^^^^^^^^^^^^^^^^	chr6:38088020-38088271(+)$1	251	76	98	17.4893
hhhhhhuuuuuuuuuuuuhhhh	chr21:33054545-33054795(-)$1	250	140	162	18.9514
[dddduuuuuuuuuuuudddd]	chr5:72852777-72853031(-)$1	254	29	51	20.6879
=======ttttttttttt====	chr2:29133479-29133745(+)$1	266	33	55	19.4930
e[cccwwwwwwwwwwwwwwccc	chr12:110818715-110818970(-)$1	255	89	111	21.6648
ddd[ccctttttttttttcccd	chr6:144943234-144943517(+)$1	283	248	270	19.1109
gggggyyyyyyyyyyyyyyyyg	chr6:86333110-86333383(-)$1	273	82	104	19.8092
=[ccc^^^^^^^^^^^^^^^^^	chr9:99368466-99368718(-)$1	252	65	87	17.3646
iiiiiiuuuuuuuuuuuuiiii	chr17:30684735-30684997(+)$1	262	224	246	21.2303
gggggwwwwwwwwwwwwwwggg	chr6:119667160-119667376(-)$1	216	86	108	21.8407
=====xxxxxxxxxxxxxxx==	chr8:128828677-128828928(+)$1	251	62	84	17.8524
ffeeeeettttttttttteeee	chr2:219658350-219658629(+)$1	279	246	268	19.0744
ddddwwwwwwwwwwwwwwdddd	chr20:13774839-13775090(+)$1	251	16	38	20.7852
[ddddvvvvvvvvvvvvvdddd	chr2:26270510-26270782(+)$1	272	244	266	22.6743
ddddwwwwwwwwwwwwwwdddd	chr13:75910377-75910637(-)$1	260	88	110	20.7852
fffffwwwwwwwwwwwwwwfff	chr16:12840070-12840334(-)$1	264	35	57	20.8211
::cccwwwwwwwwwwwwwwccc	chr12:112858061-112858313(+)$1	252	155	177	19.4435
fffffvvvvvvvvvvvvvffff	chr9:71845378-71845668(+)$1	290	117	139	21.7452
eeeee^^^^^^^^^^^^^^^^^	chr16:89522843-89523053(-)$1	210	78	100	17.4893
iiiiiiuuuuuuuuuuuuiiii	chr1:113235903-113236167(+)$1	264	6	28	21.2303
[eeeeettttttttttteeeee	chr16:21510437-21510708(-)$1	271	83	105	19.5501
=====^^^^^^^^^^^^^^^^^	chr2:71600391-71600643(+)$1	252	10	32	17.6155
:ddddvvvvvvvvvvvvvdddd	chr17:73387726-73387990(-)$1	264	175	197	21.4936
iiiii^^^^^^^^^^^^^^^^^	chr10:1053285-1053549(+)$1	264	209	231	17.5547
eeeeevvvvvvvvvvvvveeee	chr12:110741442-110741695(+)$1	253	83	105	23.1025
ffffffuuuuuuuuuuuuffff	chr6:87888786-87889043(+)$1	257	18	40	20.1047
eeeee^^^^^^^^^^^^^^^^^	chr6:119520731-119520959(-)$1	228	27	49	17.4893
ggggg^^^^^^^^^^^^^^^^^	chr3:42661594-42661848(+)$1	254	187	209	17.5037
=====wwwwwwwwwwwwww===	chr8:17636153-17636419(-)$1	266	81	103	22.0664
iiiiiwwwwwwwwwwwwwwiii	chr6:99870602-99870856(-)$1	254	46	68	21.8809
iiiiiiitttttttttttiiii	chr6:119509282-119509573(-)$1	291	150	172	18.9153
deeeeettttttttttteeeee	chr6:24712770-24713022(-)$1	252	160	182	19.2344
ggggg^^^^^^^^^^^^^^^^^	chr2:203163615-203163858(+)$1	243	55	77	17.5037
eeeeevvvvvvvvvvvvveeee	chr20:8266015-8266290(+)$1	275	109	131	23.1025
:eeeeettttttttttteeeee	chr2:239111378-239111635(-)$1	257	231	253	18.3694
g[dddduuuuuuuuuuuudddd	chr2:223767769-223768030(+)$1	261	140	162	21.0291
eeeeevvvvvvvvvvvvveeee	chr2:42419278-42419546(+)$1	268	5	27	23.1025
Iddddvvvvvvvvvvvvvdddd	chr12:132582878-132583134(+)$1	256	60	82	21.3090

#otherMatches

#Seq PSSM
uuuccuuuuuuuuuuuuuggag	chr20:47763070-47763345(-)$1	275	85	107	23.1025
aggugauuuucccaccacaucc	chr10:80838385-80838642(+)$1	257	15	37	19.2939
ugcuuaagccucccaaauagcu	chrX:70763553-70763771(+)$1	218	194	216	21.2117
AAGAACUCUUCAUUUCUUuuuu	chr2:160605402-160605693(+)$1	291	57	79	17.6155
uuuuuuuuuuuuuuuuuuuuuu	chr1:21394707-21394974(-)$1	267	81	103	17.6155
uuuuuuuuuuuuuuuuuuuuuu	chr16:71795569-71795824(-)$1	255	82	104	17.3145
CUCUAGAUUGUUUUUGAUGGAG	chr2:188369340-188369628(-)$1	288	89	111	21.1584
GUUUCUCUUGAGCUCUAUGAAA	chr20:33007203-33007463(+)$1	260	52	74	22.6247
gcuaauuuuuuuguauuuuuag	chr10:88824879-88825135(-)$1	256	230	252	23.1025
UCAAGCCAAAUCAAUUUAAUCU	chr1:62151351-62151619(-)$1	268	233	255	19.8092
GUAUGCUUUGUUUUCUUCAGCU	chr17:56073695-56073947(-)$1	252	35	57	19.0051
uggcuaauuuuuguauuuuuag	chr2:27257383-27257643(+)$1	260	228	250	18.4567
caaauguauaguuuaauaauuu	chr16:75400906-75401166(-)$1	260	54	76	22.8373
aacccccacuuccuuccugggu	chr14:21684112-21684360(-)$1	248	143	165	23.1025
ccagguucacaccauucuccug	chr14:36109037-36109249(-)$1	212	178	200	21.4936
uuuuuuuuuuuuuuuuuuugaa	chr2:223747425-223747667(+)$1	242	54	76	20.2060
GCCGUCUAAUCUCAGAGUGGCA	chr17:3510093-3510349(-)$1	256	117	139	21.3667
ucuuuuuuuuuuuuuuuaaaga	chr6:37820407-37820619(+)$1	212	84	106	21.1584
gggagagcuuuaauuuauuccc	chr20:30998940-30999192(+)$1	252	23	45	20.7666
cacugaaaccuccaccucacag	chr14:34916321-34916534(-)$1	213	160	182	21.7339
cccACACCCuuuuuuuuggugg	chr2:242697797-242698056(+)$1	259	94	116	21.7452
AUCUCCAACuuuuuuuuuuuuu	chr1:21488318-21488555(-)$1	237	70	92	17.3145
CCUCAuuuguuuauuuuuugag	chr10:79798372-79798603(+)$1	231	34	56	22.2670
caccucgaccucccaaaguggu	chr16:87396587-87396797(-)$1	210	35	57	20.1464
ccugccuuauccucccaaguag	chr15:68415300-68415574(+)$1	274	198	220	22.6743
UAAGCUUAUACUUUGUGCUUUG	chr15:66058427-66058663(-)$1	236	18	40	18.5952
aggcaauccucccaccucugcc	chr2:173300263-173300543(+)$1	280	191	213	23.1025
AAAAGUUUUUACAGUUUUCUUU	chr8:82589081-82589319(-)$1	238	22	44	23.1025
GUACUGCUCUUUUUAAAUGGUG	chr2:171790466-171790745(+)$1	279	126	148	22.8373
GUUAUCACAAUCAAACAUUUAC	chr17:59217852-59218106(+)$1	254	9	31	17.5547
uuuuuuuuuuuuuuuuuuuuuu	chr6:38088020-38088271(+)$1	251	76	98	17.4893
caguggcgcaaucucaucucac	chr21:33054545-33054795(-)$1	250	140	162	18.9514
ccuauuuuauucuuuucauagu	chr5:72852777-72853031(-)$1	254	29	51	20.6879
uauauacagauaacgugcgugu	chr2:29133479-29133745(+)$1	266	33	55	19.4930
AUGGGGUUUUUUUUUUUUGUCC	chr12:110818715-110818970(-)$1	255	89	111	21.6648
uggcuaauuuuuguauuuuuau	chr6:144943234-144943517(+)$1	283	248	270	19.1109
uuuuuuuuuuuuuuuuuuuuug	chr6:86333110-86333383(-)$1	273	82	104	19.8092
ACAAAUAAUAuucuuuuuuuuu	chr9:99368466-99368718(-)$1	252	65	87	17.3646
gacuaauuuuuuguauuuuuag	chr17:30684735-30684997(+)$1	262	224	246	21.2303
uuuucuuuucuuucuuuuugga	chr6:119667160-119667376(-)$1	216	86	108	21.8407
aaaaaaacccaugcguauucuu	chr8:128828677-128828928(+)$1	251	62	84	17.8524
uggcuaauuuuucguauuuuag	chr2:219658350-219658629(+)$1	279	246	268	19.0744
ggguaaaauguccaguccaccc	chr20:13774839-13775090(+)$1	251	16	38	20.7852
gcuaauuuuuuuguauuuuuag	chr2:26270510-26270782(+)$1	272	244	266	22.6743
UCuuuuuuuuuuuuccuugaga	chr13:75910377-75910637(-)$1	260	88	110	20.7852
uuuuauguuaccuuuguuuugg	chr16:12840070-12840334(-)$1	264	35	57	20.8211
ucggcucaccacaaucuccgcc	chr12:112858061-112858313(+)$1	252	155	177	19.4435
UGCCUGCCAUCUUUCUUAAggc	chr9:71845378-71845668(+)$1	290	117	139	21.7452
guuuccaucuuuuuuuuuuuuu	chr16:89522843-89523053(-)$1	210	78	100	17.4893
UUCUACACACAAUUGCAGGUGG	chr1:113235903-113236167(+)$1	264	6	28	21.2303
agcuaauuuuuguauuuuuagu	chr16:21510437-21510708(-)$1	271	83	105	19.5501
ugaguugucuguaucuuuuccu	chr2:71600391-71600643(+)$1	252	10	32	17.6155
ccagguucaugccauucuccug	chr17:73387726-73387990(-)$1	264	175	197	21.4936
ugggacccugucucuauaaaaa	chr10:1053285-1053549(+)$1	264	209	231	17.5547
gcuaauauuuuuguauuuuuag	chr12:110741442-110741695(+)$1	253	83	105	23.1025
UAAAUAUUAAUAUAAGAUUAUU	chr6:87888786-87889043(+)$1	257	18	40	20.1047
gccaauuuuuaauuuuuuuuuu	chr6:119520731-119520959(-)$1	228	27	49	17.4893
UUGAAUAAAAGUUGAAAUUUCG	chr3:42661594-42661848(+)$1	254	187	209	17.5037
uuuuauuuuuauauauuuuugg	chr8:17636153-17636419(-)$1	266	81	103	22.0664
GGGGGGUAUUUAUAACCGACUC	chr6:99870602-99870856(-)$1	254	46	68	21.8809
GAAGUCAUUUUAUAUCCCUGGC	chr6:119509282-119509573(-)$1	291	150	172	18.9153
cugcaaccuccuccuccuugca	chr6:24712770-24713022(-)$1	252	160	182	19.2344
CAAGAuuuuuuuuuuuuuuuuu	chr2:203163615-203163858(+)$1	243	55	77	17.5037
uaaGAACCCUAUCUCAUCUCUU	chr20:8266015-8266290(+)$1	275	109	131	23.1025
ACAGGGCCUGUGUUAAUCCCUG	chr2:239111378-239111635(-)$1	257	231	253	18.3694
caguggcaugaucuuaacuuau	chr2:223767769-223768030(+)$1	261	140	162	21.0291
UUUUGAAUGUAAUUUCCCCAAG	chr2:42419278-42419546(+)$1	268	5	27	23.1025
aagggcuuuaaucuuuuucccu	chr12:132582878-132583134(+)$1	256	60	82	21.3090

#DB
(((((.............))))	chr20:47763070-47763345(-)$1	1	85	107	23.1025
(((.(((...........))).	chr10:80838385-80838642(+)$1	1	15	37	19.2939
.(((..............))).	chrX:70763553-70763771(+)$1	1	194	216	21.2117
(((((.................	chr2:160605402-160605693(+)$1	1	57	79	17.6155
(((((.................	chr1:21394707-21394974(-)$1	1	81	103	17.6155
.((((.................	chr16:71795569-71795824(-)$1	1	82	104	17.3145
(((((............)))))	chr2:188369340-188369628(-)$1	1	89	111	21.1584
.((((.............))))	chr20:33007203-33007463(+)$1	1	52	74	22.6247
(((((.............))))	chr10:88824879-88825135(-)$1	1	230	252	23.1025
(((((................)	chr1:62151351-62151619(-)$1	1	233	255	19.8092
(((.(((...........))))	chr17:56073695-56073947(-)$1	1	35	57	19.0051
)))((((...........))))	chr2:27257383-27257643(+)$1	1	228	250	18.4567
(((((.............))))	chr16:75400906-75401166(-)$1	1	54	76	22.8373
(((((.............))))	chr14:21684112-21684360(-)$1	1	143	165	23.1025
.((((.............))))	chr14:36109037-36109249(-)$1	1	178	200	21.4936
(((((..............)))	chr2:223747425-223747667(+)$1	1	54	76	20.2060
((.(((............))).	chr17:3510093-3510349(-)$1	1	117	139	21.3667
(((((............)))))	chr6:37820407-37820619(+)$1	1	84	106	21.1584
(((((............)))))	chr20:30998940-30999192(+)$1	1	23	45	20.7666
..(((..............)))	chr14:34916321-34916534(-)$1	1	160	182	21.7339
(((((.............))))	chr2:242697797-242698056(+)$1	1	94	116	21.7452
.((((.................	chr1:21488318-21488555(-)$1	1	70	92	17.3145
.((((.............))))	chr10:79798372-79798603(+)$1	1	34	56	22.2670
((((.(...........).)))	chr16:87396587-87396797(-)$1	1	35	57	20.1464
.((((.............))))	chr15:68415300-68415574(+)$1	1	198	220	22.6743
..(((...........))))))	chr15:66058427-66058663(-)$1	1	18	40	18.5952
(((((.............))))	chr2:173300263-173300543(+)$1	1	191	213	23.1025
(((((.............))))	chr8:82589081-82589319(-)$1	1	22	44	23.1025
(((((.............))))	chr2:171790466-171790745(+)$1	1	126	148	22.8373
(((((.................	chr17:59217852-59218106(+)$1	1	9	31	17.5547
(((((.................	chr6:38088020-38088271(+)$1	1	76	98	17.4893
((((((............))))	chr21:33054545-33054795(-)$1	1	140	162	18.9514
.((((............)))).	chr5:72852777-72853031(-)$1	1	29	51	20.6879
(((((((...........))))	chr2:29133479-29133745(+)$1	1	33	55	19.4930
(.(((..............)))	chr12:110818715-110818970(-)$1	1	89	111	21.6648
(((.(((...........))))	chr6:144943234-144943517(+)$1	1	248	270	19.1109
(((((................)	chr6:86333110-86333383(-)$1	1	82	104	19.8092
(.(((.................	chr9:99368466-99368718(-)$1	1	65	87	17.3646
((((((............))))	chr17:30684735-30684997(+)$1	1	224	246	21.2303
(((((..............)))	chr6:119667160-119667376(-)$1	1	86	108	21.8407
(((((...............))	chr8:128828677-128828928(+)$1	1	62	84	17.8524
))(((((...........))))	chr2:219658350-219658629(+)$1	1	246	268	19.0744
((((..............))))	chr20:13774839-13775090(+)$1	1	16	38	20.7852
.((((.............))))	chr2:26270510-26270782(+)$1	1	244	266	22.6743
((((..............))))	chr13:75910377-75910637(-)$1	1	88	110	20.7852
(((((..............)))	chr16:12840070-12840334(-)$1	1	35	57	20.8211
..(((..............)))	chr12:112858061-112858313(+)$1	1	155	177	19.4435
(((((.............))))	chr9:71845378-71845668(+)$1	1	117	139	21.7452
(((((.................	chr16:89522843-89523053(-)$1	1	78	100	17.4893
((((((............))))	chr1:113235903-113236167(+)$1	1	6	28	21.2303
.(((((...........)))))	chr16:21510437-21510708(-)$1	1	83	105	19.5501
(((((.................	chr2:71600391-71600643(+)$1	1	10	32	17.6155
.((((.............))))	chr17:73387726-73387990(-)$1	1	175	197	21.4936
(((((.................	chr10:1053285-1053549(+)$1	1	209	231	17.5547
(((((.............))))	chr12:110741442-110741695(+)$1	1	83	105	23.1025
((((((............))))	chr6:87888786-87889043(+)$1	1	18	40	20.1047
(((((.................	chr6:119520731-119520959(-)$1	1	27	49	17.4893
(((((.................	chr3:42661594-42661848(+)$1	1	187	209	17.5037
(((((..............)))	chr8:17636153-17636419(-)$1	1	81	103	22.0664
(((((..............)))	chr6:99870602-99870856(-)$1	1	46	68	21.8809
(((((((...........))))	chr6:119509282-119509573(-)$1	1	150	172	18.9153
)(((((...........)))))	chr6:24712770-24713022(-)$1	1	160	182	19.2344
(((((.................	chr2:203163615-203163858(+)$1	1	55	77	17.5037
(((((.............))))	chr20:8266015-8266290(+)$1	1	109	131	23.1025
.(((((...........)))))	chr2:239111378-239111635(-)$1	1	231	253	18.3694
(.((((............))))	chr2:223767769-223768030(+)$1	1	140	162	21.0291
(((((.............))))	chr2:42419278-42419546(+)$1	1	5	27	23.1025
(((((.............))))	chr12:132582878-132583134(+)$1	1	60	82	21.3090

#PSSM
e : 0.22	g : 0.16	[ : 0.10	= : 0.10	f : 0.10	i : 0.08	: : 0.05	d : 0.05	! : 0.02	h : 0.02	$ : 0.01	" : 0.01	I : 0.01	
e : 0.25	d : 0.19	g : 0.14	f : 0.10	= : 0.08	i : 0.08	[ : 0.04	h : 0.02	c : 0.01	! : 0.01	" : 0.01	: : 0.01	
e : 0.25	d : 0.20	g : 0.14	c : 0.08	= : 0.08	f : 0.08	i : 0.08	h : 0.02	[ : 0.01	
e : 0.25	d : 0.20	g : 0.13	c : 0.10	= : 0.08	i : 0.08	f : 0.05	[ : 0.04	h : 0.02	
e : 0.25	d : 0.17	c : 0.13	g : 0.11	= : 0.08	i : 0.08	f : 0.05	w : 0.04	h : 0.02	[ : 0.01	
v : 0.27	^ : 0.19	w : 0.16	c : 0.05	u : 0.05	e : 0.05	i : 0.04	y : 0.02	d : 0.02	a : 0.01	t : 0.01	h : 0.01	= : 0.01	x : 0.01	f : 0.01	
v : 0.27	^ : 0.19	w : 0.16	u : 0.14	t : 0.07	c : 0.04	y : 0.02	d : 0.01	= : 0.01	x : 0.01	e : 0.01	i : 0.01	
v : 0.27	^ : 0.19	t : 0.17	w : 0.16	u : 0.14	y : 0.02	x : 0.01	
v : 0.27	^ : 0.19	t : 0.17	w : 0.16	u : 0.14	y : 0.02	x : 0.01	
v : 0.27	^ : 0.19	t : 0.17	w : 0.16	u : 0.14	y : 0.02	x : 0.01	
v : 0.27	^ : 0.19	t : 0.17	w : 0.16	u : 0.14	y : 0.02	x : 0.01	
v : 0.27	^ : 0.19	t : 0.17	w : 0.16	u : 0.14	y : 0.02	x : 0.01	
v : 0.27	^ : 0.19	t : 0.17	w : 0.16	u : 0.14	y : 0.02	x : 0.01	
v : 0.27	^ : 0.19	t : 0.17	w : 0.16	u : 0.14	y : 0.02	x : 0.01	
v : 0.27	^ : 0.19	t : 0.17	w : 0.16	u : 0.14	y : 0.02	x : 0.01	
v : 0.27	^ : 0.19	t : 0.17	w : 0.16	u : 0.14	y : 0.02	x : 0.01	
v : 0.27	^ : 0.19	t : 0.16	w : 0.16	u : 0.14	y : 0.02	c : 0.01	x : 0.01	
v : 0.27	^ : 0.19	w : 0.16	t : 0.10	u : 0.08	e : 0.07	y : 0.02	g : 0.01	a : 0.01	c : 0.01	d : 0.01	x : 0.01	
e : 0.20	^ : 0.19	d : 0.17	w : 0.11	c : 0.08	g : 0.04	f : 0.04	i : 0.04	y : 0.02	] : 0.01	h : 0.01	= : 0.01	x : 0.01	
e : 0.22	^ : 0.19	d : 0.17	c : 0.11	g : 0.07	f : 0.05	i : 0.05	y : 0.02	h : 0.02	= : 0.02	x : 0.01	
e : 0.22	^ : 0.19	d : 0.17	c : 0.11	g : 0.07	f : 0.05	i : 0.05	= : 0.04	y : 0.02	h : 0.02	
e : 0.22	^ : 0.19	d : 0.17	g : 0.10	f : 0.07	i : 0.05	] : 0.04	c : 0.04	= : 0.04	h : 0.02	2 : 0.01	

#score	1382.7883016432736
#seq	68
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_transcript_m1_run2.txt

#BEAR
####ddddtttttttttttdddd444	chr4:39500429-39500701(-)$1	272	130	156	23.2807
ccc[cccuuuuuuuuuuuuccc]ccc	chr16:87866088-87866304(-)$1	216	156	182	24.6159
::eeeeeuuuuuuuuuuuueeeee::	chr21:45564841-45565131(+)$1	290	231	257	20.3057
:gggggggtttttttttttggggggg	chr3:185644483-185644756(-)$1	273	167	193	22.9504
iiiiiiiuuuuuuuuuuuuiiiiiii	chr6:160102082-160102332(-)$1	250	75	101	25.1500
eee[cccuuuuuuuuuuuuccceeee	chr19:57324389-57324635(-)$1	246	131	157	24.2690
ddd!!bbvvvvvvvvvvvvvbb22dd	chr16:31199393-31199638(+)$1	245	146	172	22.0100
[cccyyyyyyyyyyyyyyyyccc333	chr6:132212804-132213037(+)$1	233	125	151	22.0507
ddd[ddddtttttttttttdddd]dd	chr12:9264260-9264507(-)$1	247	205	231	22.6876
dddd[ccctttttttttttccc]ddd	chr8:98863673-98863924(+)$1	251	81	107	22.9325
iffffffuuuuuuuuuuuuffffff:	chr4:151509007-151509275(-)$1	268	159	185	22.4063
ffffcccvvvvvvvvvvvvvccc]ff	chr9:95013160-95013437(-)$1	277	26	52	23.5381
&&eeeeeuuuuuuuuuuuueeeee44	chr17:70120564-70120817(+)$1	253	45	71	22.9386
ddeeeeeuuuuuuuuuuuueeeee:C	chr11:65192169-65192401(+)$1	232	191	217	21.7003
ggggyyyyyyyyyyyyyyyygggggg	chr9:733283-733532(+)$1	249	155	181	22.2521
eeeeeyyyyyyyyyyyyyyyyeeeee	chr8:22279502-22279742(+)$1	240	51	77	21.4374
[ccc[ccctttttttttttcccccc]	chr20:32691070-32691345(-)$1	275	134	160	23.8908
========ttttttttttt=======	chr1:150547098-150547363(-)$1	265	38	64	24.4793
ffffffwwwwwwwwwwwwwwffffff	chr2:188418726-188418975(-)$1	249	207	233	21.4421
!!ddddvvvvvvvvvvvvvdddd22g	chr2:231743677-231743951(+)$1	274	45	71	23.1471
####ddddtttttttttttdddd444	chr4:39500501-39500741(-)$1	240	170	196	23.2807
$$eeeeettttttttttteeeee444	chr7:44618887-44619141(-)$1	254	119	145	22.5866
ggggcccuuuuuuuuuuuuccc]ggg	chr7:66422281-66422533(+)$1	252	154	180	24.9925
b!!ddddwwwwwwwwwwwwwwddddb	chr11:65272144-65272377(+)$1	233	25	51	21.7697
[ffffffyyyyyyyyyyyyyyyyfff	chr14:39502186-39502432(-)$1	246	167	193	20.8337
gggggggtttttttttttgggggggf	chrX:20168337-20168578(-)$1	241	154	180	23.3842
ggg!!bbuuuuuuuuuuuubb4444g	chr2:153511815-153512109(-)$1	294	119	145	23.6792
iiiiiiiwwwwwwwwwwwwwwiiiii	chr14:39651742-39652031(+)$1	289	170	196	23.2521
=======vvvvvvvvvvvvv======	chr17:40126359-40126608(+)$1	249	83	109	24.9980
$ffffffuuuuuuuuuuuuffffff5	chr6:163994662-163994907(+)$1	245	110	136	22.4675
gggggggwwwwwwwwwwwwwwggggg	chr2:47128980-47129247(-)$1	267	59	85	23.1158
ccceeeeettttttttttteeeee::	chr1:46744257-46744539(-)$1	282	68	94	21.2663
""ddddattttttttttta]dddd]i	chr1:205683243-205683491(-)$1	248	159	185	23.4298
"""eeeeettttttttttteeeee88	chr11:65197762-65197975(+)$1	213	29	55	22.5692
ggggggguuuuuuuuuuuuggggggg	chr1:20978631-20978920(-)$1	289	112	138	24.9732
ee[dddduuuuuuuuuuuudddd]ee	chr6:35824855-35825129(-)$1	274	235	261	23.8795
eee[ddddtttttttttttdddd]ee	chr20:43128170-43128447(-)$1	277	245	271	23.0399
cc[dddduuuuuuuuuuuuddddccc	chr6:132214771-132215018(+)$1	247	117	143	24.1066
ggggggguuuuuuuuuuuuggggggg	chr17:62495705-62495953(-)$1	248	90	116	24.9732
gggggggvvvvvvvvvvvvvgggggg	chr12:56629398-56629673(+)$1	275	214	240	24.5580
"""ddddwwwwwwwwwwwwwwdddd4	chr14:101201193-101201463(+)$1	270	74	100	22.2922
iiiiiiiuuuuuuuuuuuuiiiiiii	chr7:94296724-94296969(+)$1	245	162	188	25.1500
eeee[bbuuuuuuuuuuuubb22eee	chr2:21246235-21246455(-)$1	220	61	87	22.6849
iiiiiiivvvvvvvvvvvvviiiiii	chr7:94298808-94299045(+)$1	237	9	35	24.6951
gggggggtttttttttttggggggg]	chrX:132669702-132669944(-)$1	242	43	69	23.5879
ggggggguuuuuuuuuuuuggggggg	chr1:150238116-150238360(-)$1	244	85	111	24.9732
cc!!ddddtttttttttttdddd]cc	chr11:65210487-65210722(+)$1	235	163	189	23.4786
cc!!cccyyyyyyyyyyyyyyyyccc	chr2:85549631-85549884(-)$1	253	40	66	21.7374
b[bb[ccctttttttttttccc]bb]	chr2:188331387-188331650(-)$1	263	88	114	22.5364
gggggggtttttttttttgggggggd	chr7:103112510-103112744(-)$1	234	83	109	23.3617
""a[cccuuuuuuuuuuuuccc]a44	chrX:131505966-131506246(-)$1	280	147	173	24.7681
ggggggguuuuuuuuuuuuggggggg	chr3:50036892-50037177(+)$1	285	258	284	24.9732
cc[ddddvvvvvvvvvvvvvdddd]c	chr3:145787314-145787562(-)$1	248	28	54	23.7355
gggg[avvvvvvvvvvvvvagggggg	chr8:22278994-22279199(+)$1	205	175	201	24.2834
iiiiiiiitttttttttttiiiiiii	chr6:1314325-1314579(+)$1	254	5	31	23.9489
eeeddddvvvvvvvvvvvvvdddd]e	chr8:22279314-22279549(+)$1	235	54	80	23.3513
:eeeeevvvvvvvvvvvvveeeeehh	chr12:53873356-53873613(+)$1	257	114	140	22.0356
iiiiiiivvvvvvvvvvvvviiiiii	chr10:102122040-102122249(+)$1	209	168	194	24.6951
:eeeeevvvvvvvvvvvvveeeeecc	chr16:3777287-3777569(-)$1	282	17	43	22.4344
[ddddbbtttttttttttbb22dddd	chr16:8943823-8944085(+)$1	262	36	62	21.1525
iiiiiiiuuuuuuuuuuuuiiiiiii	chr6:119500824-119501066(-)$1	242	78	104	25.1500
fffffwwwwwwwwwwwwwwffffff]	chr11:65271765-65271984(+)$1	219	135	161	21.1545

#otherMatches

#Seq PSSM
UCAUUAUUAAAAUAUAUCCAAUGUCC	chr4:39500429-39500701(-)$1	272	130	156	23.2807
UCAUUGCUACCACAGACUUGCACUGA	chr16:87866088-87866304(-)$1	216	156	182	24.6159
CAGGGACUUGCCUCACUGUGUCCCAA	chr21:45564841-45565131(+)$1	290	231	257	20.3057
AGCAGCUUAUUUGUUUUUAAAGUUGC	chr3:185644483-185644756(-)$1	273	167	193	22.9504
ugaaggaaacucaagauucuccuuua	chr6:160102082-160102332(-)$1	250	75	101	25.1500
UUGUGCAUUAUUUGAACCCUGUCAAU	chr19:57324389-57324635(-)$1	246	131	157	24.2690
GAUUUGGUGUUAAUUUUUUUCCUUGU	chr16:31199393-31199638(+)$1	245	146	172	22.0100
ucuguauaugauauuuuuuucagccu	chr6:132212804-132213037(+)$1	233	125	151	22.0507
AUGCAGACAUCaacccaaagucuuca	chr12:9264260-9264507(-)$1	247	205	231	22.6876
GCAAUAGUUCUGUUAUUUCACUUUUG	chr8:98863673-98863924(+)$1	251	81	107	22.9325
GGCUUAGUUUGAAUUUCUUCUAAGUU	chr4:151509007-151509275(-)$1	268	159	185	22.4063
GUCAGUCUUCUGUGCAUAUUGACUUG	chr9:95013160-95013437(-)$1	277	26	52	23.5381
UUGGACAUUUGUGuuuuuuuguuuuu	chr17:70120564-70120817(+)$1	253	45	71	22.9386
AGGGGACAGCUUGGCACCGGUCCCGU	chr11:65192169-65192401(+)$1	232	191	217	21.7003
UAUGUCAUUUUUUUACUUUUCAUAUG	chr9:733283-733532(+)$1	249	155	181	22.2521
UUGCCUCAUGAGUCAAAAAUUGGCAA	chr8:22279502-22279742(+)$1	240	51	77	21.4374
CUGAUGUUUCCCUCUCUUUGACUCAU	chr20:32691070-32691345(-)$1	275	134	160	23.8908
AAUCCUCCAAAAGGGAAAGGGAGGAU	chr1:150547098-150547363(-)$1	265	38	64	24.4793
ACUCAAACUGCAAUCCAAACUUGAGU	chr2:188418726-188418975(-)$1	249	207	233	21.4421
UUCUGAAAUUCCAUCCCCCUCAGCUU	chr2:231743677-231743951(+)$1	274	45	71	23.1471
UCAUUAUUAAAAUAUAUCCAAUGUCC	chr4:39500501-39500741(-)$1	240	170	196	23.2807
ACAGUCCUUUAUCCACCUGGAUUUUU	chr7:44618887-44619141(-)$1	254	119	145	22.5866
AGUUGCUUACACGAUGCAUGGCUAAC	chr7:66422281-66422533(+)$1	252	154	180	24.9925
CAACAGUCUUCAAGAAAUUAAACUGG	chr11:65272144-65272377(+)$1	233	25	51	21.7697
AGAGCAAUAAGAACAAAUUUAUUUUG	chr14:39502186-39502432(-)$1	246	167	193	20.8337
AGAAAAAAAUCACAAAUAUUUUUCUA	chrX:20168337-20168578(-)$1	241	154	180	23.3842
CUCUUGCUUUUUUUUCCCUGCUAUUG	chr2:153511815-153512109(-)$1	294	119	145	23.6792
UGUUGGCUCUAACUUAAACAUGCUGA	chr14:39651742-39652031(+)$1	289	170	196	23.2521
ugucuuuuuucuuuguuuuuagagac	chr17:40126359-40126608(+)$1	249	83	109	24.9980
UUGCUGUUUCUAUUAACCCACAGCAU	chr6:163994662-163994907(+)$1	245	110	136	22.4675
UUUUCUUUAUUACAGUAUUAUAAGAA	chr2:47128980-47129247(-)$1	267	59	85	23.1158
CCCAGAACCCCAACCACCAGUUCUAU	chr1:46744257-46744539(-)$1	282	68	94	21.2663
AAACCCCUGAAGUAUUGUGUGGGUGU	chr1:205683243-205683491(-)$1	248	159	185	23.4298
UUUCAUGUAACGGGAAUCAGCAUGUA	chr11:65197762-65197975(+)$1	213	29	55	22.5692
GGUUUUGUUUUGCUUUGUUUAAAGCC	chr1:20978631-20978920(-)$1	289	112	138	24.9732
GAGAGGUCCGAAUUCAAAAACCUGUC	chr6:35824855-35825129(-)$1	274	235	261	23.8795
AUGAGUAUGUAAAAGUAAAAUGCAUG	chr20:43128170-43128447(-)$1	277	245	271	23.0399
UCCUUUCUUUUCUUUUCUUGAAAGAG	chr6:132214771-132215018(+)$1	247	117	143	24.1066
UUUUUAGGUUUUUUUUGUACUAGAAA	chr17:62495705-62495953(-)$1	248	90	116	24.9732
gguuaggaguucgaguccagccugac	chr12:56629398-56629673(+)$1	275	214	240	24.5580
GUUCCGCAGAGCUUACUAUACGCGGU	chr14:101201193-101201463(+)$1	270	74	100	22.2922
UAUUGUUAAACUAAGUAAAAAUGAUA	chr7:94296724-94296969(+)$1	245	162	188	25.1500
AAGAUUCUGUUUGCCUUUUGAUUUCU	chr2:21246235-21246455(-)$1	220	61	87	22.6849
AAAGUGAUAAAUAAAAACCCUUGCUU	chr7:94298808-94299045(+)$1	237	9	35	24.6951
GCCAAAUUAUUCUCCUAUGUUUGGCU	chrX:132669702-132669944(-)$1	242	43	69	23.5879
CUGCCUUUUUUUCUUUUUUGAGGUGG	chr1:150238116-150238360(-)$1	244	85	111	24.9732
UCCUGGGGUCUCUCCGCUUCCCCUGA	chr11:65210487-65210722(+)$1	235	163	189	23.4786
CCUCUGGAAAAAGAUGAACGUCACCA	chr2:85549631-85549884(-)$1	253	40	66	21.7374
UUCAUUAAAUUUUCUAUGCUUAUUGU	chr2:188331387-188331650(-)$1	263	88	114	22.5364
AAUAUACUCCUUAAAAAUGUAUGUUG	chr7:103112510-103112744(-)$1	234	83	109	23.3617
AUGCAGCUCAUUUUAGUAUGCUACUU	chrX:131505966-131506246(-)$1	280	147	173	24.7681
UAAAAGCUAGAGCCCAGUUGCUUUUG	chr3:50036892-50037177(+)$1	285	258	284	24.9732
UCGCUCCUUAUUCUUUUUUUGGGGGG	chr3:145787314-145787562(-)$1	248	28	54	23.7355
GAAGACUCUGGAAGAUUUUGCUUUAA	chr8:22278994-22279199(+)$1	205	175	201	24.2834
CCUUUGUGUUUUAUAACUUUACAGAG	chr6:1314325-1314579(+)$1	254	5	31	23.9489
AGGGUGUUUUCCCUUUUUGUGCACAC	chr8:22279314-22279549(+)$1	235	54	80	23.3513
UCAUGAAUUUUUCUGUUUGUCAUGGA	chr12:53873356-53873613(+)$1	257	114	140	22.0356
AGGAAUCUCUUCACUACCCUGAUUCU	chr10:102122040-102122249(+)$1	209	168	194	24.6951
AACCAGUUGAUUUAAAUAUCUGGUCU	chr16:3777287-3777569(-)$1	282	17	43	22.4344
cagcugccaagaccccaagccuaguu	chr16:8943823-8944085(+)$1	262	36	62	21.1525
AAUAAAAAGACAUUUUAUAUUUUAUU	chr6:119500824-119501066(-)$1	242	78	104	25.1500
CGACUGGAGUAUGAUUAAAAGUUGUG	chr11:65271765-65271984(+)$1	219	135	161	21.1545

#DB
....((((...........))))...	chr4:39500429-39500701(-)$1	1	130	156	23.2807
(((.(((............))).)))	chr16:87866088-87866304(-)$1	1	156	182	24.6159
..(((((............)))))..	chr21:45564841-45565131(+)$1	1	231	257	20.3057
.(((((((...........)))))))	chr3:185644483-185644756(-)$1	1	167	193	22.9504
(((((((............)))))))	chr6:160102082-160102332(-)$1	1	75	101	25.1500
(((.(((............)))))))	chr19:57324389-57324635(-)$1	1	131	157	24.2690
(((..((.............))..))	chr16:31199393-31199638(+)$1	1	146	172	22.0100
.(((................)))...	chr6:132212804-132213037(+)$1	1	125	151	22.0507
(((.((((...........)))).))	chr12:9264260-9264507(-)$1	1	205	231	22.6876
((((.(((...........))).)))	chr8:98863673-98863924(+)$1	1	81	107	22.9325
)((((((............)))))).	chr4:151509007-151509275(-)$1	1	159	185	22.4063
(((((((.............))).))	chr9:95013160-95013437(-)$1	1	26	52	23.5381
..(((((............)))))..	chr17:70120564-70120817(+)$1	1	45	71	22.9386
))(((((............))))).)	chr11:65192169-65192401(+)$1	1	191	217	21.7003
((((................))))))	chr9:733283-733532(+)$1	1	155	181	22.2521
(((((................)))))	chr8:22279502-22279742(+)$1	1	51	77	21.4374
.(((.(((...........)))))).	chr20:32691070-32691345(-)$1	1	134	160	23.8908
((((((((...........)))))))	chr1:150547098-150547363(-)$1	1	38	64	24.4793
((((((..............))))))	chr2:188418726-188418975(-)$1	1	207	233	21.4421
..((((.............))))..)	chr2:231743677-231743951(+)$1	1	45	71	23.1471
....((((...........))))...	chr4:39500501-39500741(-)$1	1	170	196	23.2807
..(((((...........)))))...	chr7:44618887-44619141(-)$1	1	119	145	22.5866
(((((((............))).)))	chr7:66422281-66422533(+)$1	1	154	180	24.9925
(..((((..............)))))	chr11:65272144-65272377(+)$1	1	25	51	21.7697
.((((((................)))	chr14:39502186-39502432(-)$1	1	167	193	20.8337
(((((((...........))))))))	chrX:20168337-20168578(-)$1	1	154	180	23.3842
(((..((............))....)	chr2:153511815-153512109(-)$1	1	119	145	23.6792
(((((((..............)))))	chr14:39651742-39652031(+)$1	1	170	196	23.2521
(((((((.............))))))	chr17:40126359-40126608(+)$1	1	83	109	24.9980
.((((((............)))))).	chr6:163994662-163994907(+)$1	1	110	136	22.4675
(((((((..............)))))	chr2:47128980-47129247(-)$1	1	59	85	23.1158
)))(((((...........)))))..	chr1:46744257-46744539(-)$1	1	68	94	21.2663
..(((((...........).)))).)	chr1:205683243-205683491(-)$1	1	159	185	23.4298
...(((((...........)))))..	chr11:65197762-65197975(+)$1	1	29	55	22.5692
(((((((............)))))))	chr1:20978631-20978920(-)$1	1	112	138	24.9732
((.((((............)))).))	chr6:35824855-35825129(-)$1	1	235	261	23.8795
(((.((((...........)))).))	chr20:43128170-43128447(-)$1	1	245	271	23.0399
((.((((............)))))))	chr6:132214771-132215018(+)$1	1	117	143	24.1066
(((((((............)))))))	chr17:62495705-62495953(-)$1	1	90	116	24.9732
(((((((.............))))))	chr12:56629398-56629673(+)$1	1	214	240	24.5580
...((((..............)))).	chr14:101201193-101201463(+)$1	1	74	100	22.2922
(((((((............)))))))	chr7:94296724-94296969(+)$1	1	162	188	25.1500
((((.((............))..)))	chr2:21246235-21246455(-)$1	1	61	87	22.6849
(((((((.............))))))	chr7:94298808-94299045(+)$1	1	9	35	24.6951
(((((((...........))))))).	chrX:132669702-132669944(-)$1	1	43	69	23.5879
(((((((............)))))))	chr1:150238116-150238360(-)$1	1	85	111	24.9732
((..((((...........)))).))	chr11:65210487-65210722(+)$1	1	163	189	23.4786
((..(((................)))	chr2:85549631-85549884(-)$1	1	40	66	21.7374
(.((.(((...........))).)).	chr2:188331387-188331650(-)$1	1	88	114	22.5364
(((((((...........)))))))(	chr7:103112510-103112744(-)$1	1	83	109	23.3617
..(.(((............))).)..	chrX:131505966-131506246(-)$1	1	147	173	24.7681
(((((((............)))))))	chr3:50036892-50037177(+)$1	1	258	284	24.9732
((.((((.............)))).)	chr3:145787314-145787562(-)$1	1	28	54	23.7355
((((.(.............)))))))	chr8:22278994-22279199(+)$1	1	175	201	24.2834
((((((((...........)))))))	chr6:1314325-1314579(+)$1	1	5	31	23.9489
(((((((.............)))).)	chr8:22279314-22279549(+)$1	1	54	80	23.3513
.(((((.............)))))((	chr12:53873356-53873613(+)$1	1	114	140	22.0356
(((((((.............))))))	chr10:102122040-102122249(+)$1	1	168	194	24.6951
.(((((.............)))))((	chr16:3777287-3777569(-)$1	1	17	43	22.4344
.((((((...........))..))))	chr16:8943823-8944085(+)$1	1	36	62	21.1525
(((((((............)))))))	chr6:119500824-119501066(-)$1	1	78	104	25.1500
(((((..............)))))).	chr11:65271765-65271984(+)$1	1	135	161	21.1545

#PSSM
g : 0.20	i : 0.12	c : 0.09	e : 0.09	: : 0.06	d : 0.06	[ : 0.06	" : 0.06	f : 0.04	# : 0.03	= : 0.03	$ : 0.03	b : 0.03	& : 0.01	! : 0.01	
g : 0.22	c : 0.12	e : 0.12	i : 0.11	f : 0.09	d : 0.08	" : 0.06	# : 0.03	= : 0.03	! : 0.03	: : 0.01	& : 0.01	$ : 0.01	[ : 0.01	
g : 0.22	e : 0.17	i : 0.11	d : 0.09	f : 0.09	c : 0.06	! : 0.04	[ : 0.04	# : 0.03	= : 0.03	" : 0.03	b : 0.01	a : 0.01	
g : 0.20	e : 0.16	d : 0.16	i : 0.11	f : 0.09	[ : 0.08	! : 0.06	# : 0.03	c : 0.03	= : 0.03	b : 0.01	
d : 0.22	g : 0.16	e : 0.14	i : 0.11	c : 0.09	[ : 0.08	f : 0.08	! : 0.03	y : 0.03	= : 0.03	
d : 0.20	g : 0.16	c : 0.14	e : 0.12	i : 0.11	b : 0.06	f : 0.06	y : 0.04	= : 0.03	a : 0.01	w : 0.01	
d : 0.17	g : 0.16	c : 0.14	i : 0.11	e : 0.09	b : 0.06	v : 0.06	y : 0.04	f : 0.04	= : 0.03	w : 0.03	a : 0.01	
u : 0.32	v : 0.19	w : 0.09	t : 0.09	d : 0.08	y : 0.08	c : 0.04	e : 0.03	g : 0.01	= : 0.01	i : 0.01	
u : 0.32	t : 0.30	v : 0.19	w : 0.09	y : 0.08	
u : 0.32	t : 0.30	v : 0.19	w : 0.09	y : 0.08	
u : 0.32	t : 0.30	v : 0.19	w : 0.09	y : 0.08	
u : 0.32	t : 0.30	v : 0.19	w : 0.09	y : 0.08	
u : 0.32	t : 0.30	v : 0.19	w : 0.09	y : 0.08	
u : 0.32	t : 0.30	v : 0.19	w : 0.09	y : 0.08	
u : 0.32	t : 0.30	v : 0.19	w : 0.09	y : 0.08	
u : 0.32	t : 0.30	v : 0.19	w : 0.09	y : 0.08	
u : 0.32	t : 0.30	v : 0.19	w : 0.09	y : 0.08	
u : 0.32	t : 0.30	v : 0.19	w : 0.09	y : 0.08	
u : 0.32	t : 0.20	v : 0.19	w : 0.09	y : 0.08	g : 0.04	e : 0.01	a : 0.01	b : 0.01	
d : 0.12	e : 0.12	g : 0.12	v : 0.12	c : 0.11	y : 0.08	w : 0.08	i : 0.06	f : 0.04	b : 0.04	= : 0.01	] : 0.01	a : 0.01	
d : 0.17	g : 0.17	c : 0.14	e : 0.12	i : 0.09	f : 0.06	w : 0.06	b : 0.04	y : 0.04	= : 0.03	2 : 0.01	
d : 0.20	g : 0.19	c : 0.14	e : 0.14	i : 0.11	f : 0.06	= : 0.03	y : 0.03	2 : 0.03	b : 0.01	4 : 0.01	
d : 0.22	g : 0.19	e : 0.16	i : 0.11	] : 0.08	f : 0.06	c : 0.04	2 : 0.03	= : 0.03	y : 0.03	4 : 0.01	
g : 0.20	e : 0.16	i : 0.11	d : 0.11	] : 0.08	f : 0.08	4 : 0.06	c : 0.06	2 : 0.03	= : 0.03	3 : 0.01	b : 0.01	a : 0.01	
g : 0.20	i : 0.11	4 : 0.09	c : 0.09	d : 0.09	f : 0.09	e : 0.08	: : 0.04	] : 0.04	= : 0.03	3 : 0.01	2 : 0.01	8 : 0.01	b : 0.01	h : 0.01	
g : 0.19	i : 0.12	4 : 0.09	c : 0.09	e : 0.09	d : 0.08	f : 0.06	] : 0.06	: : 0.04	= : 0.03	3 : 0.01	C : 0.01	b : 0.01	5 : 0.01	8 : 0.01	h : 0.01	

#score	1440.8231435204
#seq	62
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF036IYW_NSUN2_CDS_m1_run1.txt

#BEAR
cccc[eeeeeccc[ccc[cccmmmmccc]ccc]ccc4444	chr12:99080533-99080744(+)$1	211	103	143	29.9451
cccc[eeeeeccc[ccc[cccmmmmccc]ccc]ccc4444	chr12:99080544-99080748(+)$1	204	92	132	29.9451
dccceeeeeccca[ccclllccc]a]ccc333eeeee777	chr20:62597558-62597774(-)$1	216	149	189	27.5505
cccc[eeeeeccc[ccc[cccmmmmccc]ccc]ccc4444	chr12:99080548-99080751(+)$1	203	88	128	29.9451
dccceeeeeccca[ccclllccc]a]ccc333eeeee777	chr20:62597553-62597758(-)$1	205	133	173	27.5505

#otherMatches

#Seq PSSM
GAUGGAACCUUAAAGGUAUGCUUUUGUACACUAUUAAAAU	chr12:99080533-99080744(+)$1	211	103	143	29.9451
GAUGGAACCUUAAAGGUAUGCUUUUGUACACUAUUAAAAU	chr12:99080544-99080748(+)$1	204	92	132	29.9451
GGUCAGCAAGCCGGUGACAGUCAGCAGGCCCAUUGCUAUC	chr20:62597558-62597774(-)$1	216	149	189	27.5505
GAUGGAACCUUAAAGGUAUGCUUUUGUACACUAUUAAAAU	chr12:99080548-99080751(+)$1	203	88	128	29.9451
GGUCAGCAAGCCGGUGACAGUCAGCAGGCCCAUUGCUAUC	chr20:62597553-62597758(-)$1	205	133	173	27.5505

#DB
)(((.((((((((.(((.(((....))).))).)))....	chr12:99080533-99080744(+)$1	1	103	143	29.9451
)(((.((((((((.(((.(((....))).))).)))....	chr12:99080544-99080748(+)$1	1	92	132	29.9451
(((((((((((((.(((...))).).)))...)))))...	chr20:62597558-62597774(-)$1	1	149	189	27.5505
)(((.((((((((.(((.(((....))).))).)))....	chr12:99080548-99080751(+)$1	1	88	128	29.9451
(((((((((((((.(((...))).).)))...)))))...	chr20:62597553-62597758(-)$1	1	133	173	27.5505

#PSSM
c : 0.60	d : 0.40	
c : 1.00	
c : 1.00	
c : 1.00	
[ : 0.60	e : 0.40	
e : 1.00	
e : 1.00	
e : 1.00	
e : 1.00	
e : 0.60	c : 0.40	
c : 1.00	
c : 1.00	
c : 0.60	a : 0.40	
[ : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
[ : 0.60	l : 0.40	
c : 0.60	l : 0.40	
c : 0.60	l : 0.40	
c : 1.00	
m : 0.60	c : 0.40	
m : 0.60	c : 0.40	
m : 0.60	] : 0.40	
m : 0.60	a : 0.40	
c : 0.60	] : 0.40	
c : 1.00	
c : 1.00	
] : 0.60	c : 0.40	
c : 0.60	3 : 0.40	
c : 0.60	3 : 0.40	
c : 0.60	3 : 0.40	
] : 0.60	e : 0.40	
c : 0.60	e : 0.40	
c : 0.60	e : 0.40	
c : 0.60	e : 0.40	
4 : 0.60	e : 0.40	
4 : 0.60	7 : 0.40	
4 : 0.60	7 : 0.40	
4 : 0.60	7 : 0.40	

#score	144.93640067742
#seq	5
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_CDS_m2_run2.txt

#BEAR
ddd[ddddnnnnndddd22	chr2:231902561-231902869(+)$1	308	5	24	8.2085
c[ffffffnnnnnffffff	chr3:99567453-99567697(+)$1	244	141	160	11.9839
###eeeeennnnneeeeee	chr4:52774982-52775246(+)$1	264	54	73	10.0153
!!ffffffnnnnnffffff	chr2:201728806-201729067(-)$1	261	166	185	12.2372
::ffffffnnnnnffffff	chr21:46281627-46281848(-)$1	221	193	212	10.0777
:ffffffooooooffffff	chr7:141478453-141478703(+)$1	250	223	242	7.7950
ffff[cccoooooocccff	chr7:127669051-127669306(+)$1	255	229	248	7.8291
ddd!!cccnnnnnccc333	chr12:27132598-27132880(-)$1	282	99	118	9.9911
cc[eeeeennnnneeeee]	chr20:30947420-30947665(+)$1	245	136	155	9.8559
iiiiiiiiooooooiiiii	chr8:94752668-94752932(-)$1	264	164	183	7.0584
BBffffffnnnnnffffff	chr12:31477780-31478002(-)$1	222	70	89	10.1262
:gggggggnnnnngggggg	chr3:99567708-99567970(+)$1	262	66	85	10.1427
e[bb[cccnnnnnccc]bb	chr2:97482368-97482640(+)$1	272	22	41	9.5390
c!!fffffflllffffff2	chr17:44626328-44626584(-)$1	256	226	245	7.1315
ccc!!cccooooooccc22	chr17:74288684-74288958(-)$1	274	179	198	7.0809
""eeeeeooooooeeeee3	chr17:74288931-74289173(-)$1	242	104	123	7.4028
dddd[cccnnnnncccddd	chr8:41814685-41814932(-)$1	247	203	222	9.1699
Egggggggnnnnngggggg	chr5:158634782-158635048(-)$1	266	24	43	10.0108
!!dddd[annnnna]dddd	chr2:27998725-27998979(+)$1	254	14	33	9.3719
d[ccc[bbnnnnnbb]ccc	chr19:57986964-57987250(-)$1	286	174	193	8.8800
!!ffffffnnnnnffffff	chr2:201728724-201728964(-)$1	240	63	82	12.2372
eeeeecccnnnnnccc333	chr3:99549300-99549541(+)$1	241	211	230	10.1300
:gggggggnnnnngggggg	chr11:940786-941056(+)$1	270	212	231	10.1427
c[ffffffoooooofffff	chr3:49756505-49756844(+)$1	339	67	86	8.9902
ee[eeeeennnnneeeeee	chr12:50898802-50899051(+)$1	249	168	187	9.4623
##ffffffnnnnnffffff	chr19:56188480-56188734(+)$1	254	108	127	12.1425
e[eeeeeooooooeeeeee	chr7:6074953-6075200(-)$1	247	163	182	6.8131
:gggggggnnnnngggggg	chr17:48545686-48545949(+)$1	263	175	194	10.1427
""ffffffoooooofffff	chr19:8551019-8551270(+)$1	251	196	215	9.1968
[ccc[cccnnnnncccccc	chr17:76723594-76723859(-)$1	265	106	125	10.3692
$$ffffffnnnnnffffff	chr17:29632050-29632282(+)$1	232	101	120	11.8005
a[ffffffnnnnnffffff	chr8:94752559-94752810(-)$1	251	158	177	12.0582
eeffffffnnnnnffffff	chr17:80789358-80789625(+)$1	267	111	130	11.4025
:gggggggnnnnngggggg	chr14:24002712-24003013(+)$1	301	143	162	10.1427
ffbb[cccnnnnnccc22b	chr19:59073422-59073737(+)$1	315	192	211	8.9759
c!!eeeeennnnneeeee2	chr12:50135945-50136257(+)$1	312	258	277	10.0608
c[dddd[annnnna]dddd	chr11:9286484-9286849(-)$1	365	300	319	9.1186
((ffffffnnnnnffffff	chr21:46281466-46281750(-)$1	284	95	114	10.5982
ffffddddnnnnndddd33	chr3:99569568-99569897(+)$1	329	166	185	9.1117
dd!!cccannnnna]ccc2	chr17:80788967-80789215(+)$1	248	93	112	9.7788
gggggggoooooogggggg	chr17:29632263-29632537(+)$1	274	40	59	7.7074
[gggggggnnnnngggggg	chr12:121125100-121125338(+)$1	238	12	31	10.9460
ddd[ddddnnnnndddd22	chr7:6075000-6075263(-)$1	263	148	167	8.2085
!!ffffffnnnnnffffff	chr2:201728764-201729006(-)$1	242	105	124	12.2372
a[ffffffnnnnnffffff	chr8:94752610-94752863(-)$1	253	211	230	12.0582
[gggggggnnnnngggggg	chr17:48545634-48545886(+)$1	252	227	246	10.9460
fffffa[annnnna]a]ff	chr6:32940753-32940974(+)$1	221	74	93	10.4884
""ffffffoooooofffff	chr19:59073599-59073870(+)$1	271	214	233	9.1968
gggggcccnnnnnccc666	chr1:1689671-1689937(-)$1	266	159	178	9.1011
$$ffffffnnnnnffffff	chr17:29632112-29632463(+)$1	351	39	58	11.8005
"""eeeeennnnneeeeeg	chr16:48399219-48399570(-)$1	351	174	193	10.2574
fffffa[annnnna]a]ff	chr6:32940774-32941007(+)$1	233	53	72	10.4884
""ffffffnnnnnffffff	chr7:104752861-104753089(-)$1	228	50	69	12.1905
""bb[cccooooooccc]b	chr2:11721003-11721259(+)$1	256	12	31	7.2728

#otherMatches

#Seq PSSM
cggcggcggcgCGCGCCAU	chr2:231902561-231902869(+)$1	308	5	24	8.2085
UGGGGACAUGCCUUGUUCU	chr3:99567453-99567697(+)$1	244	141	160	11.9839
ACUAUUCAGAUUGUGAGUG	chr4:52774982-52775246(+)$1	264	54	73	10.0153
GGCUCCCCGUUGAGGGGGG	chr2:201728806-201729067(-)$1	261	166	185	12.2372
AACCUCACAGGAGGUGAGG	chr21:46281627-46281848(-)$1	221	193	212	10.0777
CCAGGCUGCUGCUGGCCUG	chr7:141478453-141478703(+)$1	250	223	242	7.7950
UCGCGUUGUGUCCUCAGGC	chr7:127669051-127669306(+)$1	255	229	248	7.8291
CAUGCUCUGUGUUGGACUA	chr12:27132598-27132880(-)$1	282	99	118	9.9911
UUGUGAAUUUUGUGUUCAG	chr20:30947420-30947665(+)$1	245	136	155	9.8559
GUUUUCAGUUAGAUCUGGG	chr8:94752668-94752932(-)$1	264	164	183	7.0584
GCCCCGCGUGAGCCGUGGG	chr12:31477780-31478002(-)$1	222	70	89	10.1262
GGCUGUGUUUUGUACAUGG	chr3:99567708-99567970(+)$1	262	66	85	10.1427
GGGCGGCUGAGGAGGCGGC	chr2:97482368-97482640(+)$1	272	22	41	9.5390
CACUUUCUAAAAUGGAAAU	chr17:44626328-44626584(-)$1	256	226	245	7.1315
CAGCGUGCUUUGGUGCAGC	chr17:74288684-74288958(-)$1	274	179	198	7.0809
UGGUGCAGCGUGGUGCAUA	chr17:74288931-74289173(-)$1	242	104	123	7.4028
GGGAACCUACCACAGGUCC	chr8:41814685-41814932(-)$1	247	203	222	9.1699
GAGAGGACUGUGUGUCUUU	chr5:158634782-158635048(-)$1	266	24	43	10.0108
GAUUCCUCAUAUGGUGGAA	chr2:27998725-27998979(+)$1	254	14	33	9.3719
CUGUACCGUGAUGUGAUGC	chr19:57986964-57987250(-)$1	286	174	193	8.8800
GGCUCCCCGUUGAGGGGGG	chr2:201728724-201728964(-)$1	240	63	82	12.2372
UUUAGGACAUGGAGUCAGU	chr3:99549300-99549541(+)$1	241	211	230	10.1300
UGCUCCACACUCCGUGGAG	chr11:940786-941056(+)$1	270	212	231	10.1427
CUGGCGUUGACGAAGACGC	chr3:49756505-49756844(+)$1	339	67	86	8.9902
GCCGCCUGAAGUGCGGGCG	chr12:50898802-50899051(+)$1	249	168	187	9.4623
gugucccugggcaaggggc	chr19:56188480-56188734(+)$1	254	108	127	12.1425
CAGUGGGAACGGCUCUACG	chr7:6074953-6075200(-)$1	247	163	182	6.8131
ACAAGUAGAUAAGUUGCUU	chr17:48545686-48545949(+)$1	263	175	194	10.1427
CAGGUUCCUUUGGUGGAGC	chr19:8551019-8551270(+)$1	251	196	215	9.1968
GCCUUGCCCUGCUGGUAGG	chr17:76723594-76723859(-)$1	265	106	125	10.3692
UUUCUAGAAGGGAUCUGGA	chr17:29632050-29632282(+)$1	232	101	120	11.8005
CUGAUUUUGGCUGAAAGUC	chr8:94752559-94752810(-)$1	251	158	177	12.0582
GUGAGGCAGGAAGUGUCUC	chr17:80789358-80789625(+)$1	267	111	130	11.4025
UCUCCCGCGGAGGGUGGGA	chr14:24002712-24003013(+)$1	301	143	162	10.1427
CCGUGUGGAUGCGCCGGUG	chr19:59073422-59073737(+)$1	315	192	211	8.9759
AUAUUUACUGAGUGUAGAA	chr12:50135945-50136257(+)$1	312	258	277	10.0608
GACUGGACACGGAGACCGG	chr11:9286484-9286849(-)$1	365	300	319	9.1186
AACCUCACAGGAGGUGAGG	chr21:46281466-46281750(-)$1	284	95	114	10.5982
UCUUGGAUUUUCUGUCUUU	chr3:99569568-99569897(+)$1	329	166	185	9.1117
UCGUCUGCAUGAAGUCGGU	chr17:80788967-80789215(+)$1	248	93	112	9.7788
UUGUUUGGUGUUGUAGGCA	chr17:29632263-29632537(+)$1	274	40	59	7.7074
GGGCGGUUGAGGGAACCGC	chr12:121125100-121125338(+)$1	238	12	31	10.9460
GCAGUAGCAUUAAGUUGAG	chr7:6075000-6075263(-)$1	263	148	167	8.2085
GGCUCCCCGUUGAGGGGGG	chr2:201728764-201729006(-)$1	242	105	124	12.2372
CUGAUUUUGGCUGAAAGUC	chr8:94752610-94752863(-)$1	253	211	230	12.0582
ACAAGUAGAUAAGUUGCUU	chr17:48545634-48545886(+)$1	252	227	246	10.9460
UCGGUCGCGCGGAGGGAAU	chr6:32940753-32940974(+)$1	221	74	93	10.4884
GAGGCGCUGGCUGAAGCGC	chr19:59073599-59073870(+)$1	271	214	233	9.1968
UCACAAGCGAUGGGCUAAG	chr1:1689671-1689937(-)$1	266	159	178	9.1011
UUUCUAGAAGGGAUCUGGA	chr17:29632112-29632463(+)$1	351	39	58	11.8005
GACUUCUCAUGACGGGAAA	chr16:48399219-48399570(-)$1	351	174	193	10.2574
UCGGUCGCGCGGAGGGAAU	chr6:32940774-32941007(+)$1	233	53	72	10.4884
AGAGGGCAAAAAAUGCCCU	chr7:104752861-104753089(-)$1	228	50	69	12.1905
GAGGGGGCAUGGGAGCUGC	chr2:11721003-11721259(+)$1	256	12	31	7.2728

#DB
(((.((((.....))))..	chr2:231902561-231902869(+)$1	1	5	24	8.2085
(.((((((.....))))))	chr3:99567453-99567697(+)$1	1	141	160	11.9839
...(((((.....))))))	chr4:52774982-52775246(+)$1	1	54	73	10.0153
..((((((.....))))))	chr2:201728806-201729067(-)$1	1	166	185	12.2372
..((((((.....))))))	chr21:46281627-46281848(-)$1	1	193	212	10.0777
.((((((......))))))	chr7:141478453-141478703(+)$1	1	223	242	7.7950
((((.(((......)))))	chr7:127669051-127669306(+)$1	1	229	248	7.8291
(((..(((.....)))...	chr12:27132598-27132880(-)$1	1	99	118	9.9911
((.(((((.....))))).	chr20:30947420-30947665(+)$1	1	136	155	9.8559
((((((((......)))))	chr8:94752668-94752932(-)$1	1	164	183	7.0584
((((((((.....))))))	chr12:31477780-31478002(-)$1	1	70	89	10.1262
.(((((((.....))))))	chr3:99567708-99567970(+)$1	1	66	85	10.1427
(.((.(((.....))).))	chr2:97482368-97482640(+)$1	1	22	41	9.5390
(..((((((...)))))).	chr17:44626328-44626584(-)$1	1	226	245	7.1315
(((..(((......)))..	chr17:74288684-74288958(-)$1	1	179	198	7.0809
..(((((......))))).	chr17:74288931-74289173(-)$1	1	104	123	7.4028
((((.(((.....))))))	chr8:41814685-41814932(-)$1	1	203	222	9.1699
((((((((.....))))))	chr5:158634782-158635048(-)$1	1	24	43	10.0108
..((((.(.....).))))	chr2:27998725-27998979(+)$1	1	14	33	9.3719
(.(((.((.....)).)))	chr19:57986964-57987250(-)$1	1	174	193	8.8800
..((((((.....))))))	chr2:201728724-201728964(-)$1	1	63	82	12.2372
((((((((.....)))...	chr3:99549300-99549541(+)$1	1	211	230	10.1300
.(((((((.....))))))	chr11:940786-941056(+)$1	1	212	231	10.1427
(.((((((......)))))	chr3:49756505-49756844(+)$1	1	67	86	8.9902
((.(((((.....))))))	chr12:50898802-50899051(+)$1	1	168	187	9.4623
..((((((.....))))))	chr19:56188480-56188734(+)$1	1	108	127	12.1425
(.(((((......))))))	chr7:6074953-6075200(-)$1	1	163	182	6.8131
.(((((((.....))))))	chr17:48545686-48545949(+)$1	1	175	194	10.1427
..((((((......)))))	chr19:8551019-8551270(+)$1	1	196	215	9.1968
.(((.(((.....))))))	chr17:76723594-76723859(-)$1	1	106	125	10.3692
..((((((.....))))))	chr17:29632050-29632282(+)$1	1	101	120	11.8005
(.((((((.....))))))	chr8:94752559-94752810(-)$1	1	158	177	12.0582
))((((((.....))))))	chr17:80789358-80789625(+)$1	1	111	130	11.4025
.(((((((.....))))))	chr14:24002712-24003013(+)$1	1	143	162	10.1427
((((.(((.....)))..)	chr19:59073422-59073737(+)$1	1	192	211	8.9759
(..(((((.....))))).	chr12:50135945-50136257(+)$1	1	258	277	10.0608
(.((((.(.....).))))	chr11:9286484-9286849(-)$1	1	300	319	9.1186
..((((((.....))))))	chr21:46281466-46281750(-)$1	1	95	114	10.5982
((((((((.....))))..	chr3:99569568-99569897(+)$1	1	166	185	9.1117
((..((((.....).))).	chr17:80788967-80789215(+)$1	1	93	112	9.7788
(((((((......))))))	chr17:29632263-29632537(+)$1	1	40	59	7.7074
.(((((((.....))))))	chr12:121125100-121125338(+)$1	1	12	31	10.9460
(((.((((.....))))..	chr7:6075000-6075263(-)$1	1	148	167	8.2085
..((((((.....))))))	chr2:201728764-201729006(-)$1	1	105	124	12.2372
(.((((((.....))))))	chr8:94752610-94752863(-)$1	1	211	230	12.0582
.(((((((.....))))))	chr17:48545634-48545886(+)$1	1	227	246	10.9460
((((((.(.....).).))	chr6:32940753-32940974(+)$1	1	74	93	10.4884
..((((((......)))))	chr19:59073599-59073870(+)$1	1	214	233	9.1968
((((((((.....)))...	chr1:1689671-1689937(-)$1	1	159	178	9.1011
..((((((.....))))))	chr17:29632112-29632463(+)$1	1	39	58	11.8005
...(((((.....))))))	chr16:48399219-48399570(-)$1	1	174	193	10.2574
((((((.(.....).).))	chr6:32940774-32941007(+)$1	1	53	72	10.4884
..((((((.....))))))	chr7:104752861-104753089(-)$1	1	50	69	12.1905
..((.(((......))).)	chr2:11721003-11721259(+)$1	1	12	31	7.2728

#PSSM
c : 0.12	d : 0.11	: : 0.11	" : 0.11	f : 0.09	e : 0.09	! : 0.07	[ : 0.05	# : 0.03	$ : 0.03	a : 0.03	g : 0.03	i : 0.01	B : 0.01	E : 0.01	( : 0.01	
g : 0.16	[ : 0.14	! : 0.11	f : 0.11	" : 0.11	d : 0.09	c : 0.05	e : 0.05	# : 0.03	$ : 0.03	: : 0.01	i : 0.01	B : 0.01	( : 0.01	
f : 0.40	g : 0.16	d : 0.11	b : 0.05	! : 0.05	c : 0.05	e : 0.05	[ : 0.03	# : 0.01	i : 0.01	" : 0.01	
f : 0.42	g : 0.16	e : 0.14	! : 0.05	b : 0.05	d : 0.05	[ : 0.03	c : 0.03	i : 0.01	
f : 0.38	g : 0.16	e : 0.14	[ : 0.11	d : 0.09	! : 0.03	c : 0.03	i : 0.01	
f : 0.35	c : 0.20	g : 0.14	e : 0.12	d : 0.09	a : 0.03	i : 0.01	[ : 0.01	
f : 0.35	c : 0.20	g : 0.14	e : 0.12	[ : 0.07	d : 0.05	i : 0.01	b : 0.01	
f : 0.33	c : 0.18	g : 0.12	e : 0.09	a : 0.09	o : 0.07	d : 0.05	i : 0.01	b : 0.01	
n : 0.77	o : 0.20	f : 0.01	
n : 0.77	o : 0.20	l : 0.01	
n : 0.77	o : 0.20	l : 0.01	
n : 0.77	o : 0.20	l : 0.01	
n : 0.77	o : 0.20	f : 0.01	
f : 0.29	g : 0.14	e : 0.12	o : 0.12	c : 0.12	a : 0.09	d : 0.05	b : 0.01	
f : 0.35	c : 0.18	g : 0.14	e : 0.12	] : 0.09	d : 0.05	i : 0.01	b : 0.01	
f : 0.35	c : 0.20	g : 0.14	e : 0.12	d : 0.09	a : 0.03	i : 0.01	] : 0.01	
f : 0.35	g : 0.14	e : 0.12	d : 0.11	c : 0.11	] : 0.05	3 : 0.03	i : 0.01	2 : 0.01	6 : 0.01	
f : 0.40	g : 0.14	e : 0.12	2 : 0.07	3 : 0.05	d : 0.05	c : 0.05	i : 0.01	b : 0.01	6 : 0.01	] : 0.01	
f : 0.38	g : 0.16	2 : 0.11	3 : 0.07	e : 0.05	b : 0.05	d : 0.05	c : 0.03	] : 0.01	i : 0.01	6 : 0.01	

#score	529.4841947735514
#seq	54
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_CDS_m3_run1.txt

#BEAR
ddooooooddd	chr19:49840793-49841087(-)$1	294	262	273	9.2154
eeooooooeee	chr16:47709342-47709603(+)$1	261	33	44	8.6911
ddooooooddd	chr12:49434655-49434907(-)$1	252	233	244	9.2154
ddooooooddd	chr11:12283858-12284144(+)$1	286	233	244	9.2154
bboooooobb2	chrX:140994984-140995239(+)$1	255	175	186	9.2139
ccooooooccc	chr14:63861885-63862163(-)$1	278	194	205	9.7282
ccooooooccc	chr19:14274089-14274388(-)$1	299	217	228	9.7282
ggooooooggg	chr13:45911534-45911752(-)$1	218	144	155	9.0567
[aooooooa]h	chr19:45912464-45912725(-)$1	261	172	183	9.0804
ddooooooddd	chr16:68324077-68324405(+)$1	328	272	283	9.2154
ccooooooccc	chr5:112227438-112227706(-)$1	268	249	260	9.7282
[aooooooa]h	chr19:45912355-45912599(-)$1	244	46	57	9.0804
bboooooobb:	chr16:2819087-2819355(+)$1	268	204	215	8.7197
ccooooooccc	chr19:48700362-48700680(-)$1	318	60	71	9.7282
bboooooobbe	chr12:42623919-42624162(-)$1	243	99	110	9.3715
ggooooooggg	chr7:141464567-141464841(+)$1	274	158	169	9.0567
ccooooooccc	chr5:140698599-140698866(-)$1	267	139	150	9.7282
ddooooooddd	chr12:76448737-76448971(-)$1	234	35	46	9.2154
eeooooooeee	chr19:47230815-47231086(-)$1	271	14	25	8.6911
ddooooooddd	chr2:101622709-101622971(+)$1	262	197	208	9.2154
bboooooobb:	chr22:18276456-18276725(-)$1	269	235	246	8.7197
[aooooooa]f	chr6:43151926-43152177(+)$1	251	101	112	9.0910
eeooooooeee	chr6:35447777-35448042(-)$1	265	12	23	8.6911
ggooooooggg	chr1:11888344-11888648(+)$1	304	240	251	9.0567
ccooooooccc	chr5:141046107-141046470(-)$1	363	107	118	9.7282
ccooooooccc	chr11:46686254-46686546(+)$1	292	53	64	9.7282
ddooooooddd	chr12:57114238-57114497(-)$1	259	64	75	9.2154
eeooooooeee	chr19:51323593-51323850(-)$1	257	71	82	8.6911
bboooooobb:	chr1:149895803-149896065(-)$1	262	203	214	8.7197
ccooooooccc	chr12:117289535-117289839(+)$1	304	261	272	9.7282
bboooooobb:	chr19:10400696-10400960(+)$1	264	202	213	8.7197
ccooooooccc	chr19:45912065-45912318(-)$1	253	167	178	9.7282
daooooooa]d	chr6:30673623-30673868(-)$1	245	182	193	9.3298
ccooooooccc	chr1:176137729-176138051(-)$1	322	194	205	9.7282
bboooooobb:	chr20:35090780-35091072(+)$1	292	51	62	8.7197
ddooooooddd	chr2:232324838-232325076(-)$1	238	220	231	9.2154
[aooooooa]e	chr1:183516081-183516355(+)$1	274	17	28	9.1996
bboooooobb:	chr11:57573786-57574037(+)$1	251	51	62	8.7197
ccooooooccc	chr1:14107383-14107661(+)$1	278	197	208	9.7282
ggooooooggg	chr8:101717130-101717370(-)$1	240	134	145	9.0567
ddooooooddd	chr1:154131411-154131688(-)$1	277	200	211	9.2154
bboooooobb]	chr8:145012459-145012759(-)$1	300	44	55	9.4473
ddooooooddd	chr10:102283774-102284050(-)$1	276	246	257	9.2154
bboooooobb]	chr17:38990865-38991169(+)$1	304	40	51	9.4473
ccooooooccc	chr12:57114100-57114359(-)$1	259	196	207	9.7282
ccooooooccc	chr19:45911951-45912223(-)$1	272	72	83	9.7282
ddooooooddd	chr8:62588758-62589042(-)$1	284	264	275	9.2154
ddooooooddd	chr13:39586882-39587252(-)$1	370	232	243	9.2154
bboooooobb]	chr1:205718996-205719254(-)$1	258	171	182	9.4473
bboooooobb]	chr1:202543964-202544231(+)$1	267	205	216	9.4473
ffoooooofff	chr16:30733716-30734005(+)$1	289	157	168	8.5688
ccooooooccc	chr5:140967699-140967974(-)$1	275	252	263	9.7282
bboooooobb:	chr12:57115115-57115364(-)$1	249	196	207	8.7197
ccooooooccc	chr19:42839817-42840204(+)$1	387	218	229	9.7282
bboooooobb:	chr19:42401837-42402103(+)$1	266	47	58	8.7197
ccooooooccc	chr19:49671012-49671313(+)$1	301	143	154	9.7282
!aooooooa22	chr1:144871732-144872025(-)$1	293	247	258	8.8338
bboooooobbe	chr1:44442819-44443062(+)$1	243	137	148	9.3715

#otherMatches

#Seq PSSM
cucacuguagc	chr19:49840793-49841087(-)$1	294	262	273	9.2154
GGAACCUCCCU	chr16:47709342-47709603(+)$1	261	33	44	8.6911
GGCAUCCUCUC	chr12:49434655-49434907(-)$1	252	233	244	9.2154
GUUUUCUUGCC	chr11:12283858-12284144(+)$1	286	233	244	9.2154
AGUCUCCUCUC	chrX:140994984-140995239(+)$1	255	175	186	9.2139
GCUGAACUGCU	chr14:63861885-63862163(-)$1	278	194	205	9.7282
ACACACGAGUC	chr19:14274089-14274388(-)$1	299	217	228	9.7282
UGGAAAUGUAG	chr13:45911534-45911752(-)$1	218	144	155	9.0567
GCUCUAGUGGC	chr19:45912464-45912725(-)$1	261	172	183	9.0804
GAAACCUCUCU	chr16:68324077-68324405(+)$1	328	272	283	9.2154
CAAGUUCCUGC	chr5:112227438-112227706(-)$1	268	249	260	9.7282
GCUCUAGUGGC	chr19:45912355-45912599(-)$1	244	46	57	9.0804
GCUGUCUUGCC	chr16:2819087-2819355(+)$1	268	204	215	8.7197
cuucccccagc	chr19:48700362-48700680(-)$1	318	60	71	9.7282
ucuuucuugaa	chr12:42623919-42624162(-)$1	243	99	110	9.3715
UAAUUUCCUAC	chr7:141464567-141464841(+)$1	274	158	169	9.0567
CCAGGACAGGG	chr5:140698599-140698866(-)$1	267	139	150	9.7282
GUGUAGUAACA	chr12:76448737-76448971(-)$1	234	35	46	9.2154
UGUGUCUUCAG	chr19:47230815-47231086(-)$1	271	14	25	8.6911
CAACAUAAUGU	chr2:101622709-101622971(+)$1	262	197	208	9.2154
CGUAACCUCGC	chr22:18276456-18276725(-)$1	269	235	246	8.7197
UGUGUAUCCCA	chr6:43151926-43152177(+)$1	251	101	112	9.0910
AUCUCUGCAUA	chr6:35447777-35448042(-)$1	265	12	23	8.6911
UCAUUGGGGGC	chr1:11888344-11888648(+)$1	304	240	251	9.0567
gcucucucgca	chr5:141046107-141046470(-)$1	363	107	118	9.7282
UCUCUACUGAG	chr11:46686254-46686546(+)$1	292	53	64	9.7282
GUCCCAACACC	chr12:57114238-57114497(-)$1	259	64	75	9.2154
GGACCCUCCCC	chr19:51323593-51323850(-)$1	257	71	82	8.6911
GGACAUCCCCA	chr1:149895803-149896065(-)$1	262	203	214	8.7197
CAGGGUAGUGG	chr12:117289535-117289839(+)$1	304	261	272	9.7282
GCUCCCACGCC	chr19:10400696-10400960(+)$1	264	202	213	8.7197
ACUCAACUGUC	chr19:45912065-45912318(-)$1	253	167	178	9.7282
GCUCCCUUGUC	chr6:30673623-30673868(-)$1	245	182	193	9.3298
CCUCCCUUGGU	chr1:176137729-176138051(-)$1	322	194	205	9.7282
GCUUCUUUGCC	chr20:35090780-35091072(+)$1	292	51	62	8.7197
GCUUCACUGCA	chr2:232324838-232325076(-)$1	238	220	231	9.2154
CGUUUUUUCUC	chr1:183516081-183516355(+)$1	274	17	28	9.1996
GCUUAUUUGCC	chr11:57573786-57574037(+)$1	251	51	62	8.7197
GAUAUCUUUCA	chr1:14107383-14107661(+)$1	278	197	208	9.7282
GUAAAAUCACU	chr8:101717130-101717370(-)$1	240	134	145	9.0567
UUUCUAAUGAG	chr1:154131411-154131688(-)$1	277	200	211	9.2154
GUCCCCAUGCU	chr8:145012459-145012759(-)$1	300	44	55	9.4473
GGGUCUGACCA	chr10:102283774-102284050(-)$1	276	246	257	9.2154
GUUGGCCUGCU	chr17:38990865-38991169(+)$1	304	40	51	9.4473
GUCCCUCUACC	chr12:57114100-57114359(-)$1	259	196	207	9.7282
ACUCAACUGUC	chr19:45911951-45912223(-)$1	272	72	83	9.7282
AUUUCUCUAUG	chr8:62588758-62589042(-)$1	284	264	275	9.2154
GCUUUUCUGUC	chr13:39586882-39587252(-)$1	370	232	243	9.2154
UCAGUGCGGAG	chr1:205718996-205719254(-)$1	258	171	182	9.4473
UGAACGAGCAA	chr1:202543964-202544231(+)$1	267	205	216	9.4473
CUUAACCCAGG	chr16:30733716-30734005(+)$1	289	157	168	8.5688
CAUAACUUUGA	chr5:140967699-140967974(-)$1	275	252	263	9.7282
GCUCUCCUGCC	chr12:57115115-57115364(-)$1	249	196	207	8.7197
gcucucuugcu	chr19:42839817-42840204(+)$1	387	218	229	9.7282
ccuguccuggu	chr19:42401837-42402103(+)$1	266	47	58	8.7197
GCUCCCAUGUG	chr19:49671012-49671313(+)$1	301	143	154	9.7282
CCUUGGCUGCU	chr1:144871732-144872025(-)$1	293	247	258	8.8338
GCUGAAGUGCU	chr1:44442819-44443062(+)$1	243	137	148	9.3715

#DB
((......)))	chr19:49840793-49841087(-)$1	1	262	273	9.2154
((......)))	chr16:47709342-47709603(+)$1	1	33	44	8.6911
((......)))	chr12:49434655-49434907(-)$1	1	233	244	9.2154
((......)))	chr11:12283858-12284144(+)$1	1	233	244	9.2154
((......)).	chrX:140994984-140995239(+)$1	1	175	186	9.2139
((......)))	chr14:63861885-63862163(-)$1	1	194	205	9.7282
((......)))	chr19:14274089-14274388(-)$1	1	217	228	9.7282
((......)))	chr13:45911534-45911752(-)$1	1	144	155	9.0567
.(......).)	chr19:45912464-45912725(-)$1	1	172	183	9.0804
((......)))	chr16:68324077-68324405(+)$1	1	272	283	9.2154
((......)))	chr5:112227438-112227706(-)$1	1	249	260	9.7282
.(......).)	chr19:45912355-45912599(-)$1	1	46	57	9.0804
((......)).	chr16:2819087-2819355(+)$1	1	204	215	8.7197
((......)))	chr19:48700362-48700680(-)$1	1	60	71	9.7282
((......))(	chr12:42623919-42624162(-)$1	1	99	110	9.3715
((......)))	chr7:141464567-141464841(+)$1	1	158	169	9.0567
((......)))	chr5:140698599-140698866(-)$1	1	139	150	9.7282
((......)))	chr12:76448737-76448971(-)$1	1	35	46	9.2154
((......)))	chr19:47230815-47231086(-)$1	1	14	25	8.6911
((......)))	chr2:101622709-101622971(+)$1	1	197	208	9.2154
((......)).	chr22:18276456-18276725(-)$1	1	235	246	8.7197
.(......).)	chr6:43151926-43152177(+)$1	1	101	112	9.0910
((......)))	chr6:35447777-35448042(-)$1	1	12	23	8.6911
((......)))	chr1:11888344-11888648(+)$1	1	240	251	9.0567
((......)))	chr5:141046107-141046470(-)$1	1	107	118	9.7282
((......)))	chr11:46686254-46686546(+)$1	1	53	64	9.7282
((......)))	chr12:57114238-57114497(-)$1	1	64	75	9.2154
((......)))	chr19:51323593-51323850(-)$1	1	71	82	8.6911
((......)).	chr1:149895803-149896065(-)$1	1	203	214	8.7197
((......)))	chr12:117289535-117289839(+)$1	1	261	272	9.7282
((......)).	chr19:10400696-10400960(+)$1	1	202	213	8.7197
((......)))	chr19:45912065-45912318(-)$1	1	167	178	9.7282
((......).)	chr6:30673623-30673868(-)$1	1	182	193	9.3298
((......)))	chr1:176137729-176138051(-)$1	1	194	205	9.7282
((......)).	chr20:35090780-35091072(+)$1	1	51	62	8.7197
((......)))	chr2:232324838-232325076(-)$1	1	220	231	9.2154
.(......).)	chr1:183516081-183516355(+)$1	1	17	28	9.1996
((......)).	chr11:57573786-57574037(+)$1	1	51	62	8.7197
((......)))	chr1:14107383-14107661(+)$1	1	197	208	9.7282
((......)))	chr8:101717130-101717370(-)$1	1	134	145	9.0567
((......)))	chr1:154131411-154131688(-)$1	1	200	211	9.2154
((......)).	chr8:145012459-145012759(-)$1	1	44	55	9.4473
((......)))	chr10:102283774-102284050(-)$1	1	246	257	9.2154
((......)).	chr17:38990865-38991169(+)$1	1	40	51	9.4473
((......)))	chr12:57114100-57114359(-)$1	1	196	207	9.7282
((......)))	chr19:45911951-45912223(-)$1	1	72	83	9.7282
((......)))	chr8:62588758-62589042(-)$1	1	264	275	9.2154
((......)))	chr13:39586882-39587252(-)$1	1	232	243	9.2154
((......)).	chr1:205718996-205719254(-)$1	1	171	182	9.4473
((......)).	chr1:202543964-202544231(+)$1	1	205	216	9.4473
((......)))	chr16:30733716-30734005(+)$1	1	157	168	8.5688
((......)))	chr5:140967699-140967974(-)$1	1	252	263	9.7282
((......)).	chr12:57115115-57115364(-)$1	1	196	207	8.7197
((......)))	chr19:42839817-42840204(+)$1	1	218	229	9.7282
((......)).	chr19:42401837-42402103(+)$1	1	47	58	8.7197
((......)))	chr19:49671012-49671313(+)$1	1	143	154	9.7282
.(......)..	chr1:144871732-144872025(-)$1	1	247	258	8.8338
((......)))	chr1:44442819-44443062(+)$1	1	137	148	9.3715

#PSSM
c : 0.27	b : 0.25	d : 0.22	e : 0.06	g : 0.06	[ : 0.06	f : 0.01	! : 0.01	
c : 0.27	b : 0.25	d : 0.20	a : 0.10	e : 0.06	g : 0.06	f : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
c : 0.27	b : 0.25	d : 0.20	a : 0.10	e : 0.06	g : 0.06	f : 0.01	
c : 0.27	b : 0.25	d : 0.20	] : 0.08	e : 0.06	g : 0.06	f : 0.01	2 : 0.01	
c : 0.27	d : 0.22	: : 0.13	e : 0.12	g : 0.06	] : 0.06	2 : 0.03	h : 0.03	f : 0.03	

#score	535.9173853117865
#seq	58
#width	11
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_CDS_m1_run2.txt

#BEAR
ee^^^^^^^^^^^^^^^^^^^eeeee333dd	chr19:49464109-49464405(+)$1	296	127	158	31.7749
[eeeee^^^^^^^^^^^^^^^^^^^^^eeee	chr19:42401286-42401608(+)$1	322	216	247	35.3318
b!!ccc^^^^^^^^^^^^^^^^^^^^^ccc2	chrM:13679-13897(+)$1	218	47	78	36.2091
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr3:47459203-47459470(-)$1	267	27	58	41.4340
^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhh	chr12:7046071-7046361(+)$1	290	106	137	40.3872
cc^^^^^^^^^^^^^^^^^^^^ccc4444dd	chr1:151400558-151400870(-)$1	312	162	193	35.1585
ccc^^^^^^^^^^^^^^^^^^^ccc22dddd	chr12:49445257-49445564(-)$1	307	183	214	33.1802
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr1:45274267-45274630(+)$1	363	200	231	41.4659
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr17:2298354-2298639(-)$1	285	67	98	41.4659
ggggggg^^^^^^^^^^^^^^^^^^^ggggg	chr17:40947148-40947485(+)$1	337	101	132	32.0276
dd^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrM:15550-15788(+)$1	238	73	104	40.2317
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr17:56051866-56052128(-)$1	262	176	207	41.3906
ff^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chrM:3438-3653(+)$1	215	170	201	40.2294
ddd^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr19:41255488-41255797(-)$1	309	233	264	39.1031
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr5:135496580-135496872(+)$1	292	94	125	41.5925
dd^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr16:72828922-72829212(-)$1	290	14	45	40.2317
ee^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr19:19109677-19109947(-)$1	270	115	146	40.0677
bb^^^^^^^^^^^^^^^^^^^^^^^bb333e	chr12:57112373-57112664(-)$1	291	85	116	37.1059
bb^^^^^^^^^^^^^^^^^^^^^^^^^bb]d	chr19:50183285-50183567(+)$1	282	140	171	39.5725
+++eeeee^^^^^^^^^^^^^^^^^^^eeee	chr17:30469834-30470151(+)$1	317	216	247	32.6553
!ccc^^^^^^^^^^^^^^^^^^^ccc]dddd	chr20:32250163-32250475(-)$1	312	175	206	33.6388
c[bb^^^^^^^^^^^^^^^^^^^^^bb]ccc	chr7:73011777-73012027(-)$1	250	138	169	35.2827
^^^^^^^^^^^^^^^^^^^^^^^^^^^bb]d	chr16:30748741-30749001(+)$1	260	176	207	40.8474
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10807-11031(+)$1	224	71	102	41.4340
ffff^^^^^^^^^^^^^^^^^^^^^^^ffff	chr17:46972812-46973128(+)$1	316	109	140	37.9651
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr14:99976817-99977110(+)$1	293	44	75	41.5925
^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc4	chrM:10168-10388(+)$1	220	98	129	41.4173
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr12:7045613-7045880(+)$1	267	94	125	41.3906
ccc^^^^^^^^^^^^^^^^^^ccc333dddd	chr19:3574156-3574452(+)$1	296	121	152	32.8269
ffff^^^^^^^^^^^^^^^^^^^^^^^ffff	chr20:2816620-2816868(-)$1	248	188	219	37.9651
eee^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr12:57919787-57920122(+)$1	335	142	173	39.0522
bb^^^^^^^^^^^^^^^^^^^^^bb333ccc	chr17:42475016-42475275(-)$1	259	137	168	35.6871
bb"""dddd^^^^^^^^^^^^^^^^^^dddd	chr7:73011697-73011930(-)$1	233	31	62	31.7325
ffffff^^^^^^^^^^^^^^^^^^^ffffff	chr22:18301434-18301784(-)$1	350	247	278	32.3857
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr11:68029577-68029879(-)$1	302	229	260	41.5925
eee^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr2:204305582-204305856(-)$1	274	63	94	39.0522
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr17:7417170-7417424(+)$1	254	150	181	41.4659
$$$dddd^^^^^^^^^^^^^^^^^^^^dddd	chr19:48197409-48197690(+)$1	281	68	99	34.4217
dd^^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr21:34941745-34941995(+)$1	250	69	100	40.1598
ffffff^^^^^^^^^^^^^^^^^^^ffffff	chr10:121355868-121356135(-)$1	267	40	71	32.3857
cc^^^^^^^^^^^^^^^^^^^^^^^^^ccc>	chr12:57110391-57110682(-)$1	291	55	86	40.2225
fffff^^^^^^^^^^^^^^^^^^^^^^ffff	chr12:56558098-56558413(-)$1	315	140	171	36.6409
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr19:36278916-36279194(+)$1	278	86	117	41.3906
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr17:7417081-7417370(+)$1	289	92	123	41.4659
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr17:7417224-7417505(+)$1	281	96	127	41.4659
ff^^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr19:42410426-42410717(+)$1	291	148	179	40.1611
:dddd^^^^^^^^^^^^^^^^^^^^^^dddd	chr8:22432368-22432594(+)$1	226	90	121	35.9899
ff^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chrM:3470-3719(+)$1	249	138	169	40.2294
"""ccc^^^^^^^^^^^^^^^^^^^^^ccc2	chr11:117152704-117152983(+)$1	279	148	179	36.5071
b!!ccc^^^^^^^^^^^^^^^^^^^^^ccc2	chrM:13697-13939(+)$1	242	29	60	36.2091
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr10:103901043-103901283(+)$1	240	204	235	41.5925
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr16:67576365-67576682(+)$1	317	196	227	41.4659
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10831-11044(+)$1	213	47	78	41.4340
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr16:30665998-30666278(+)$1	280	79	110	41.5925
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr16:30748697-30748941(+)$1	244	103	134	41.5925
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr17:47375765-47376048(-)$1	283	26	57	41.5925
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr9:126144143-126144411(-)$1	268	145	176	41.4659
bb^^^^^^^^^^^^^^^^^^^^^bb22dddd	chr12:7045868-7046126(+)$1	258	129	160	35.0213
fff^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr6:138752545-138752790(-)$1	245	144	175	39.1573
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr17:2298439-2298713(-)$1	274	141	172	41.4659
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10844-11059(+)$1	215	34	65	41.4340
cc!!ccc^^^^^^^^^^^^^^^^^^^^ccc2	chr19:42401824-42402095(+)$1	271	121	152	34.9986
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr16:67576518-67576746(+)$1	228	43	74	41.4659
ddccc^^^^^^^^^^^^^^^^^^ccc]dddd	chr19:15353863-15354116(-)$1	253	85	116	32.0708

#otherMatches

#Seq PSSM
ccugcccccCGCCACUCCUCUGGGACCCUGG	chr19:49464109-49464405(+)$1	296	127	158	31.7749
AGGGCUAGCCCCUCCCCCAUUUCUCCCAGCC	chr19:42401286-42401608(+)$1	322	216	247	35.3318
GCAGGAUUUCUCAUUACUAACAACAUUUCCC	chrM:13679-13897(+)$1	218	47	78	36.2091
cacccucuccccccacccccuuuucccuugc	chr3:47459203-47459470(-)$1	267	27	58	41.4340
ACCCAUGUUCACACCCCUCCCCUUCCCAGGG	chr12:7046071-7046361(+)$1	290	106	137	40.3872
GUCCACUCCCAGCACUUCUACCACUCCCACU	chr1:151400558-151400870(-)$1	312	162	193	35.1585
CUCCCCCACAUCCCCACCACCUGAGGACUCA	chr12:49445257-49445564(-)$1	307	183	214	33.1802
CCUCCACCCCAACCCCUUCUCACUCAUGGAG	chr1:45274267-45274630(+)$1	363	200	231	41.4659
gccccacugacugucaucccuaucccugugg	chr17:2298354-2298639(-)$1	285	67	98	41.4659
GGCCCAGUCCCUGCUGUCCCCCUCACCUGGG	chr17:40947148-40947485(+)$1	337	101	132	32.0276
GCCCUAUUACUAUCCAUCCUCAUCCUAGCAA	chrM:15550-15788(+)$1	238	73	104	40.2317
CAUCUCCAAUGAAUCUACCCACACCUAUGAC	chr17:56051866-56052128(-)$1	262	176	207	41.3906
GCCUCCUAUUUAUUCUAGCCACCUCUAGCCU	chrM:3438-3653(+)$1	215	170	201	40.2294
CAGACCCCUGUUCCCCCACCGCUCCCACUGC	chr19:41255488-41255797(-)$1	309	233	264	39.1031
CCAGCCCAACAACACUCCUUUUCCCUUAUCU	chr5:135496580-135496872(+)$1	292	94	125	41.5925
GCAGAAGACCAACACUCCCCAGCAGAAGCUC	chr16:72828922-72829212(-)$1	290	14	45	40.2317
ACCAGCCUUUCCCCUUCCUUCCCUACCCGUC	chr19:19109677-19109947(-)$1	270	115	146	40.0677
CCAUGACUUCUUCCUCCCCCAAAAAGGCCCG	chr12:57112373-57112664(-)$1	291	85	116	37.1059
CAUUUUCCUUCCCCUCCCCUCCCCAGCUGUG	chr19:50183285-50183567(+)$1	282	140	171	39.5725
CUCCGAAGCUUCUCUCCUCCUUUUCCUCUUC	chr17:30469834-30470151(+)$1	317	216	247	32.6553
UGCUCCCCAUCCCCCGCCCUCACAGCCGGCU	chr20:32250163-32250475(-)$1	312	175	206	33.6388
CCUGCCCCCCACCUCCCUUCCCUCCCAUGGC	chr7:73011777-73012027(-)$1	250	138	169	35.2827
UCUUGUAACUCCUUCCUCUCCUCUCUUGCUU	chr16:30748741-30749001(+)$1	260	176	207	40.8474
UAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10807-11031(+)$1	224	71	102	41.4340
GGAGUAACAGUCCCCAUUCACCUCACCCUCC	chr17:46972812-46973128(+)$1	316	109	140	37.9651
ccaccugccaucccacccccUACUCCUGGCU	chr14:99976817-99977110(+)$1	293	44	75	41.5925
GCCCUCCUUUUACCCCUACCAUGAGCCCUAC	chrM:10168-10388(+)$1	220	98	129	41.4173
GUAUACUCAGCCUUCUCUCCCAUCCCAGGCU	chr12:7045613-7045880(+)$1	267	94	125	41.3906
CGCCCCCAUCCCCGCCCAUACGCGUUAGGCC	chr19:3574156-3574452(+)$1	296	121	152	32.8269
GUGCUUCUGCAGCUCCCCCACCCUCUUGUAC	chr20:2816620-2816868(-)$1	248	188	219	37.9651
UCCUGUCCCCCAACCCUUUUCUCUCCCGGAG	chr12:57919787-57920122(+)$1	335	142	173	39.0522
GCCAUCCCAUCCACAUCAUUCCCGCCUCAGC	chr17:42475016-42475275(-)$1	259	137	168	35.6871
GGCCUGGAGCCCUGCCCCCCACCUCCCUUCC	chr7:73011697-73011930(-)$1	233	31	62	31.7325
CUGUCCAAAGCCAAAGUGACACCAAGGACAG	chr22:18301434-18301784(-)$1	350	247	278	32.3857
UAAAUCCACACCCAUGCCCUCAAACACAACC	chr11:68029577-68029879(-)$1	302	229	260	41.5925
GAGUUGUUccaccacccccucccccuccucc	chr2:204305582-204305856(-)$1	274	63	94	39.0522
gccccacuuacucgcccacuucccccaagua	chr17:7417170-7417424(+)$1	254	150	181	41.4659
CCCGGCCCCCUUCCCGCCCACCCUCCCGGCC	chr19:48197409-48197690(+)$1	281	68	99	34.4217
AGCCCUCUACCACCUUAAUUUUCCAUUCCUC	chr21:34941745-34941995(+)$1	250	69	100	40.1598
GGUGCCUUUUCCUCUGUCCCCAGCCGGUGCC	chr10:121355868-121356135(-)$1	267	40	71	32.3857
GCAAUUCCAACCCCCAAAGAAGCCCCAGCUA	chr12:57110391-57110682(-)$1	291	55	86	40.2225
GGCACUCUCCCCCCACCUAACCUGCCUGUGU	chr12:56558098-56558413(-)$1	315	140	171	36.6409
CCUCACCUGCCUCUUCCUCCUCCUCUUCCCC	chr19:36278916-36279194(+)$1	278	86	117	41.3906
GUCCCAAAUAUUCACCCACCUCUCCCAAGUA	chr17:7417081-7417370(+)$1	289	92	123	41.4659
gccccacuuacucgcccacuucccccaagua	chr17:7417224-7417505(+)$1	281	96	127	41.4659
UCUCCUGACUCCACCCCUCCUUGCCCCUGGC	chr19:42410426-42410717(+)$1	291	148	179	40.1611
UCCUCCCCACCCCACUCCCCAAAUACAGAGG	chr8:22432368-22432594(+)$1	226	90	121	35.9899
GCCUCCUAUUUAUUCUAGCCACCUCUAGCCU	chrM:3470-3719(+)$1	249	138	169	40.2294
CCUGCCGCCUCCAUCCCACCUCCCCCAGGCU	chr11:117152704-117152983(+)$1	279	148	179	36.5071
GCAGGAUUUCUCAUUACUAACAACAUUUCCC	chrM:13697-13939(+)$1	242	29	60	36.2091
UCUACUGUUCCCCCACCUCCUUUGCCUCCAG	chr10:103901043-103901283(+)$1	240	204	235	41.5925
ACCCCCACAAGUCCCACCCACAAAACCAGUA	chr16:67576365-67576682(+)$1	317	196	227	41.4659
UAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10831-11044(+)$1	213	47	78	41.4340
AUCUUCCUCACGCCCAACAAAACCCCACAGC	chr16:30665998-30666278(+)$1	280	79	110	41.5925
UAUCUUGccuucuccucccccuccuucacag	chr16:30748697-30748941(+)$1	244	103	134	41.5925
CCCCAACCCCUCCAAUCAAUAUGAAUCCUGU	chr17:47375765-47376048(-)$1	283	26	57	41.5925
AUUCCCACAGCCACCACUCAACCCCUUUGUC	chr9:126144143-126144411(-)$1	268	145	176	41.4659
GCUCCCACCACGCACACCCUUACGCCAUGUC	chr12:7045868-7046126(+)$1	258	129	160	35.0213
AGGUCUCCUUUCCUUCCUCCCCCACCUCCUG	chr6:138752545-138752790(-)$1	245	144	175	39.1573
gccccacugacugucaucccuaucccugugg	chr17:2298439-2298713(-)$1	274	141	172	41.4659
UAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10844-11059(+)$1	215	34	65	41.4340
cccuggccucuccccaccucugucccugccc	chr19:42401824-42402095(+)$1	271	121	152	34.9986
ACCCCCACAAGUCCCACCCACAAAACCAGUA	chr16:67576518-67576746(+)$1	228	43	74	41.4659
UGcagucccagcccccacccccccugccgcc	chr19:15353863-15354116(-)$1	253	85	116	32.0708

#DB
((...................)))))...))	chr19:49464109-49464405(+)$1	1	127	158	31.7749
.(((((.....................))))	chr19:42401286-42401608(+)$1	1	216	247	35.3318
(..(((.....................))).	chrM:13679-13897(+)$1	1	47	78	36.2091
............................)))	chr3:47459203-47459470(-)$1	1	27	58	41.4340
...........................))))	chr12:7046071-7046361(+)$1	1	106	137	40.3872
((....................)))....))	chr1:151400558-151400870(-)$1	1	162	193	35.1585
(((...................)))..))))	chr12:49445257-49445564(-)$1	1	183	214	33.1802
...........................))))	chr1:45274267-45274630(+)$1	1	200	231	41.4659
...........................))))	chr17:2298354-2298639(-)$1	1	67	98	41.4659
(((((((...................)))))	chr17:40947148-40947485(+)$1	1	101	132	32.0276
((.........................))))	chrM:15550-15788(+)$1	1	73	104	40.2317
...........................))))	chr17:56051866-56052128(-)$1	1	176	207	41.3906
((.........................))))	chrM:3438-3653(+)$1	1	170	201	40.2294
(((........................))))	chr19:41255488-41255797(-)$1	1	233	264	39.1031
...........................))))	chr5:135496580-135496872(+)$1	1	94	125	41.5925
((.........................))))	chr16:72828922-72829212(-)$1	1	14	45	40.2317
((..........................)))	chr19:19109677-19109947(-)$1	1	115	146	40.0677
((.......................))...)	chr12:57112373-57112664(-)$1	1	85	116	37.1059
((.........................)).)	chr19:50183285-50183567(+)$1	1	140	171	39.5725
...(((((...................))))	chr17:30469834-30470151(+)$1	1	216	247	32.6553
.(((...................))).))))	chr20:32250163-32250475(-)$1	1	175	206	33.6388
(.((.....................)).)))	chr7:73011777-73012027(-)$1	1	138	169	35.2827
...........................)).)	chr16:30748741-30749001(+)$1	1	176	207	40.8474
............................)))	chrM:10807-11031(+)$1	1	71	102	41.4340
((((.......................))))	chr17:46972812-46973128(+)$1	1	109	140	37.9651
...........................))))	chr14:99976817-99977110(+)$1	1	44	75	41.5925
...........................))).	chrM:10168-10388(+)$1	1	98	129	41.4173
...........................))))	chr12:7045613-7045880(+)$1	1	94	125	41.3906
(((..................)))...))))	chr19:3574156-3574452(+)$1	1	121	152	32.8269
((((.......................))))	chr20:2816620-2816868(-)$1	1	188	219	37.9651
(((........................))))	chr12:57919787-57920122(+)$1	1	142	173	39.0522
((.....................))...)))	chr17:42475016-42475275(-)$1	1	137	168	35.6871
((...((((..................))))	chr7:73011697-73011930(-)$1	1	31	62	31.7325
((((((...................))))))	chr22:18301434-18301784(-)$1	1	247	278	32.3857
...........................))))	chr11:68029577-68029879(-)$1	1	229	260	41.5925
(((........................))))	chr2:204305582-204305856(-)$1	1	63	94	39.0522
...........................))))	chr17:7417170-7417424(+)$1	1	150	181	41.4659
...((((....................))))	chr19:48197409-48197690(+)$1	1	68	99	34.4217
((..........................)))	chr21:34941745-34941995(+)$1	1	69	100	40.1598
((((((...................))))))	chr10:121355868-121356135(-)$1	1	40	71	32.3857
((.........................))).	chr12:57110391-57110682(-)$1	1	55	86	40.2225
(((((......................))))	chr12:56558098-56558413(-)$1	1	140	171	36.6409
...........................))))	chr19:36278916-36279194(+)$1	1	86	117	41.3906
...........................))))	chr17:7417081-7417370(+)$1	1	92	123	41.4659
...........................))))	chr17:7417224-7417505(+)$1	1	96	127	41.4659
((..........................)))	chr19:42410426-42410717(+)$1	1	148	179	40.1611
.((((......................))))	chr8:22432368-22432594(+)$1	1	90	121	35.9899
((.........................))))	chrM:3470-3719(+)$1	1	138	169	40.2294
...(((.....................))).	chr11:117152704-117152983(+)$1	1	148	179	36.5071
(..(((.....................))).	chrM:13697-13939(+)$1	1	29	60	36.2091
...........................))))	chr10:103901043-103901283(+)$1	1	204	235	41.5925
...........................))))	chr16:67576365-67576682(+)$1	1	196	227	41.4659
............................)))	chrM:10831-11044(+)$1	1	47	78	41.4340
...........................))))	chr16:30665998-30666278(+)$1	1	79	110	41.5925
...........................))))	chr16:30748697-30748941(+)$1	1	103	134	41.5925
...........................))))	chr17:47375765-47376048(-)$1	1	26	57	41.5925
...........................))))	chr9:126144143-126144411(-)$1	1	145	176	41.4659
((.....................))..))))	chr12:7045868-7046126(+)$1	1	129	160	35.0213
(((........................))))	chr6:138752545-138752790(-)$1	1	144	175	39.1573
...........................))))	chr17:2298439-2298713(-)$1	1	141	172	41.4659
............................)))	chrM:10844-11059(+)$1	1	34	65	41.4340
((..(((....................))).	chr19:42401824-42402095(+)$1	1	121	152	34.9986
...........................))))	chr16:67576518-67576746(+)$1	1	43	74	41.4659
(((((..................))).))))	chr19:15353863-15354116(-)$1	1	85	116	32.0708

#PSSM
^ : 0.40	f : 0.14	b : 0.10	c : 0.09	d : 0.07	e : 0.06	[ : 0.01	g : 0.01	+ : 0.01	! : 0.01	$ : 0.01	: : 0.01	" : 0.01	
^ : 0.40	f : 0.14	c : 0.09	d : 0.09	e : 0.07	b : 0.07	! : 0.03	g : 0.01	+ : 0.01	[ : 0.01	$ : 0.01	" : 0.01	
^ : 0.62	f : 0.09	c : 0.06	e : 0.04	! : 0.04	d : 0.03	" : 0.03	g : 0.01	+ : 0.01	b : 0.01	$ : 0.01	
^ : 0.71	c : 0.07	f : 0.07	e : 0.03	d : 0.03	g : 0.01	b : 0.01	" : 0.01	! : 0.01	
^ : 0.78	c : 0.07	f : 0.04	e : 0.03	d : 0.03	g : 0.01	" : 0.01	
^ : 0.82	c : 0.06	e : 0.03	d : 0.03	f : 0.03	g : 0.01	
^ : 0.92	d : 0.03	g : 0.01	e : 0.01	c : 0.01	
^ : 0.96	e : 0.01	d : 0.01	
^ : 0.98	d : 0.01	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 1.00	
^ : 0.96	e : 0.01	c : 0.01	
^ : 0.93	c : 0.04	e : 0.01	
^ : 0.87	c : 0.07	b : 0.03	e : 0.01	
^ : 0.87	c : 0.06	b : 0.03	e : 0.01	3 : 0.01	
^ : 0.81	2 : 0.03	b : 0.03	c : 0.03	3 : 0.03	f : 0.03	e : 0.01	4 : 0.01	
^ : 0.79	3 : 0.04	2 : 0.03	b : 0.03	] : 0.03	f : 0.03	4 : 0.01	g : 0.01	
d : 0.28	f : 0.26	e : 0.10	^ : 0.10	c : 0.09	3 : 0.04	b : 0.03	h : 0.01	4 : 0.01	g : 0.01	] : 0.01	
d : 0.29	f : 0.28	c : 0.18	e : 0.12	3 : 0.03	b : 0.03	h : 0.01	4 : 0.01	g : 0.01	
d : 0.32	f : 0.28	c : 0.18	e : 0.12	] : 0.03	h : 0.01	g : 0.01	3 : 0.01	
d : 0.35	f : 0.28	e : 0.14	c : 0.09	2 : 0.06	h : 0.01	g : 0.01	4 : 0.01	> : 0.01	

#score	2459.547017323998
#seq	64
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_UTR_m2_run2.txt

#BEAR
e:ddddoooooodddd:BB~~~~DDDDYYJJJJJJJJJJJ	chr9:19378781-19378998(-)$1	217	136	176	48.0075
e:ddddoooooodddd:BB~~~~DDDDYYJJJJJJJJJJJ	chr9:19378745-19378959(-)$1	214	97	137	48.0075
e:ddddoooooodddd:BB~~~~DDDDYYJJJJJJJJJJJ	chr9:19378798-19379017(-)$1	219	155	195	48.0075
e:ddddoooooodddd:BB~~~~DDDDYYJJJJJJJJJJJ	chr9:19378773-19378978(-)$1	205	116	156	48.0075
e:ddddoooooodddd:BB~~~~DDDDYYJJJJJJJJJJJ	chr9:19378759-19378973(-)$1	214	111	151	48.0075
e:ddddoooooodddd:BB~~~~DDDDYYJJJJJJJJJJJ	chr9:19378708-19378945(-)$1	237	83	123	48.0075

#otherMatches

#Seq PSSM
CAGGGUGUCUUGACCCAUGGCCGUGUCCGCCUGCUACUGA	chr9:19378781-19378998(-)$1	217	136	176	48.0075
CAGGGUGUCUUGACCCAUGGCCGUGUCCGCCUGCUACUGA	chr9:19378745-19378959(-)$1	214	97	137	48.0075
CAGGGUGUCUUGACCCAUGGCCGUGUCCGCCUGCUACUGA	chr9:19378798-19379017(-)$1	219	155	195	48.0075
CAGGGUGUCUUGACCCAUGGCCGUGUCCGCCUGCUACUGA	chr9:19378773-19378978(-)$1	205	116	156	48.0075
CAGGGUGUCUUGACCCAUGGCCGUGUCCGCCUGCUACUGA	chr9:19378759-19378973(-)$1	214	111	151	48.0075
CAGGGUGUCUUGACCCAUGGCCGUGUCCGCCUGCUACUGA	chr9:19378708-19378945(-)$1	237	83	123	48.0075

#DB
).((((......)))).))....))))..)))))))))))	chr9:19378781-19378998(-)$1	1	136	176	48.0075
).((((......)))).))....))))..)))))))))))	chr9:19378745-19378959(-)$1	1	97	137	48.0075
).((((......)))).))....))))..)))))))))))	chr9:19378798-19379017(-)$1	1	155	195	48.0075
).((((......)))).))....))))..)))))))))))	chr9:19378773-19378978(-)$1	1	116	156	48.0075
).((((......)))).))....))))..)))))))))))	chr9:19378759-19378973(-)$1	1	111	151	48.0075
).((((......)))).))....))))..)))))))))))	chr9:19378708-19378945(-)$1	1	83	123	48.0075

#PSSM
e : 0.99	
: : 0.99	
d : 0.99	
d : 0.99	
d : 0.99	
d : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
d : 0.99	
d : 0.99	
d : 0.99	
d : 0.99	
: : 0.99	
B : 0.99	
B : 0.99	
~ : 0.99	
~ : 0.99	
~ : 0.99	
~ : 0.99	
D : 0.99	
D : 0.99	
D : 0.99	
D : 0.99	
Y : 0.99	
Y : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	
J : 0.99	

#score	288.0454545935999
#seq	6
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF108TOJ_PCBP1_UTR_m3_run2.txt

#BEAR
eeeeeqqqqqqqqeeeee22	chr17:79801547-79801814(-)$1	267	137	157	13.4339
dd[bbqqqqqqqqbb22ddd	chr22:43015088-43015372(-)$1	284	57	77	13.6391
gggggqqqqqqqqggggggg	chr12:56992104-56992368(-)$1	264	67	87	14.5612
cc[bbqqqqqqqqbb333cc	chr17:73842630-73842936(-)$1	306	228	248	14.8199
bbcccqqqqqqqqccc]bb:	chr2:68479301-68479572(-)$1	271	232	252	12.8810
gg[bbqqqqqqqqbb]gggg	chr12:58141967-58142272(-)$1	305	244	264	14.7691
"ddddqqqqqqqqdddd333	chr19:17452768-17453050(+)$1	282	16	36	14.4908
ee[bbqqqqqqqqbb]eeee	chr20:23614336-23614576(-)$1	240	47	67	14.3682
!ddddqqqqqqqqdddd22c	chr19:36640813-36641108(+)$1	295	214	234	14.2495
[ddddqqqqqqqqddddeee	chr1:236140672-236141020(-)$1	348	224	244	14.0971
!ddddqqqqqqqqdddd22b	chr17:80036809-80037033(-)$1	224	75	95	14.0636
=====qqqqqqqq=======	chr11:2151343-2151570(-)$1	227	36	56	14.9357
:ddddqqqqqqqqddddfff	chr19:811243-811514(+)$1	271	92	112	12.8953
!!cccqqqqqqqqccc333b	chr11:2151451-2151670(-)$1	219	21	41	15.3354
fffffqqqqqqqqffffff2	chr1:226033017-226033316(+)$1	299	199	219	13.6359
h[a[aqqqqqqqqa]a]hhh	chr14:103396974-103397254(+)$1	280	106	126	13.7035
fffffqqqqqqqqffffffe	chr17:76967606-76967878(-)$1	272	193	213	13.7963
cc[bbqqqqqqqqbbccc]c	chr10:102120829-102121109(+)$1	280	198	218	14.5994
eeeeeqqqqqqqqeeeeeee	chr15:72491686-72491938(-)$1	252	130	150	13.5563
&&cccqqqqqqqqccc333c	chr6:31913032-31913335(+)$1	303	195	215	14.0773
[ddddqqqqqqqqdddd]ae	chr17:20946055-20946355(-)$1	300	55	75	14.2339
e[cccqqqqqqqqccc]eee	chr17:76967849-76968123(-)$1	274	188	208	14.8881
f"""aqqqqqqqqa333fff	chr12:57606560-57606822(+)$1	262	47	67	14.1317
!!cccqqqqqqqqccc]ddd	chrX:152953735-152953989(+)$1	254	23	43	14.7896
ee[bbqqqqqqqqbb]eeee	chr11:2159838-2160060(-)$1	222	194	214	14.3682
dddddqqqqqqqqdddd]dd	chr12:113826589-113826901(+)$1	312	18	38	13.8212
eeeeeqqqqqqqqeeeee]a	chr6:41566845-41567093(+)$1	248	6	26	13.7634
[ddddqqqqqqqqdddd22g	chr2:220403765-220404038(-)$1	273	57	77	14.2258
fff[aqqqqqqqqa]fffff	chr22:21141801-21142072(+)$1	271	154	174	13.8179
fffffqqqqqqqqffffff]	chr10:102122259-102122471(+)$1	212	66	86	13.8158
eecccqqqqqqqqccc]eee	chr9:35697469-35697762(-)$1	293	184	204	14.7595
hh[bbqqqqqqqqbb]hhhh	chr17:42153302-42153604(+)$1	302	59	79	13.5221
ee[bbqqqqqqqqbb]eeee	chr20:23614376-23614643(-)$1	267	114	134	14.3682
!ddddqqqqqqqqdddd22b	chr11:120100125-120100406(+)$1	281	26	46	14.0636
cccbbqqqqqqqqbb]ccc2	chr12:56555075-56555418(+)$1	343	40	60	14.1504
fffffqqqqqqqqffffffc	chr6:34212862-34213083(+)$1	221	77	97	13.8791
=====qqqqqqqq=======	chr11:2151430-2151650(-)$1	220	116	136	14.9357
ee[bbqqqqqqqqbb]eeee	chr19:49468547-49468809(+)$1	262	193	213	14.3682
c[cccqqqqqqqqccc]ccc	chr10:73576920-73577184(-)$1	264	23	43	15.0098
dd[bbqqqqqqqqbb]dddd	chr19:49469950-49470188(+)$1	238	161	181	13.9822
fffffqqqqqqqqffffff:	chr16:28834334-28834598(+)$1	264	181	201	12.9856
d[cccqqqqqqqqccc]ddd	chr14:23794781-23795071(+)$1	290	155	175	14.5112
bddddqqqqqqqqdddd]bb	chr19:49426063-49426312(+)$1	249	175	195	13.4912
bb[bbqqqqqqqqbbbb]cc	chr19:54377684-54378057(+)$1	373	7	27	13.4248
dddbbqqqqqqqqbb]dddd	chr1:160968345-160968613(-)$1	268	6	26	13.7943
!ddddqqqqqqqqdddd22b	chr17:80036909-80037170(-)$1	261	212	232	14.0636
"ddddqqqqqqqqdddd]cc	chr17:40931357-40931627(+)$1	270	101	121	14.2953
fffffqqqqqqqqffffffD	chr6:7883223-7883468(-)$1	245	87	107	12.8641
c[cccqqqqqqqqccccccg	chr19:1497434-1497770(+)$1	336	10	30	14.8082
#ddddqqqqqqqqdddd333	chr11:64895410-64895672(-)$1	262	20	40	14.4602
hhcccqqqqqqqqccc]hhh	chr11:2160426-2160671(-)$1	245	50	70	14.0847
=====qqqqqqqq=======	chr16:28848053-28848325(+)$1	272	232	252	14.9357
gggggqqqqqqqqggggggg	chr19:13054834-13055084(+)$1	250	192	212	14.5612
a[cccqqqqqqqqccc]a]c	chr10:102122187-102122436(+)$1	249	91	111	15.1242
&&cccqqqqqqqqccc333c	chr6:31913198-31913486(+)$1	288	29	49	14.0773
gg[bbqqqqqqqqbb333gg	chr6:44221323-44221606(+)$1	283	249	269	14.9795
gggggqqqqqqqqggggggg	chr19:18642713-18643006(-)$1	293	123	143	14.5612
=====qqqqqqqq=======	chr16:28848181-28848430(+)$1	249	104	124	14.9357
""cccqqqqqqqqccc]eee	chr19:18642528-18642803(-)$1	275	214	234	14.8968
eeeeeqqqqqqqqeeeee]b	chr19:51857403-51857773(-)$1	370	22	42	13.6212
fffffqqqqqqqqffffff:	chr17:73842180-73842480(-)$1	300	237	257	12.9856
fffffqqqqqqqqffffff]	chr2:172016901-172017274(-)$1	373	254	274	13.8158
gggggqqqqqqqqggggggg	chr7:2703826-2704072(+)$1	246	195	215	14.5612
""cccqqqqqqqqccc333g	chr19:12907696-12907979(-)$1	283	202	222	15.3379
ccc[aqqqqqqqqa]ccc]b	chr16:28845822-28846107(+)$1	285	4	24	14.2316
gggggqqqqqqqqggggggg	chr12:56495787-56496065(+)$1	278	253	273	14.5612

#otherMatches

#Seq PSSM
CCAGGCAGCCCACCCUGGUG	chr17:79801547-79801814(-)$1	267	137	157	13.4339
CACCACCUGACGCUGCAUGA	chr22:43015088-43015372(-)$1	284	57	77	13.6391
GUCAGAUACAACCCUGAUUU	chr12:56992104-56992368(-)$1	264	67	87	14.5612
GUCUGAUCAUAAACAAUUAC	chr17:73842630-73842936(-)$1	306	228	248	14.8199
gccgccgUUUCCUGCGAGCC	chr2:68479301-68479572(-)$1	271	232	252	12.8810
AAUAAUGGUCUUUUUUUUUU	chr12:58141967-58142272(-)$1	305	244	264	14.7691
CGUAGUUUUUUAUUUAUUUU	chr19:17452768-17453050(+)$1	282	16	36	14.4908
GCCUAUCACCUCUUAUGCAC	chr20:23614336-23614576(-)$1	240	47	67	14.3682
UGUGCCAAGCCUAGCACUUG	chr19:36640813-36641108(+)$1	295	214	234	14.2495
UGAGCUCAGCCUCGCUUUGA	chr1:236140672-236141020(-)$1	348	224	244	14.0971
cccCGCCAUGCAACGGGAUU	chr17:80036809-80037033(-)$1	224	75	95	14.0636
GGGACAGUGGCUGGUCCCCA	chr11:2151343-2151570(-)$1	227	36	56	14.9357
CGUGAUUCUCCCUUCACCCC	chr19:811243-811514(+)$1	271	92	112	12.8953
GUCCCUGUUGCUUGGGUUGA	chr11:2151451-2151670(-)$1	219	21	41	15.3354
CGUGUGGUAAGCAACAUGGC	chr1:226033017-226033316(+)$1	299	199	219	13.6359
UAGCCACCUCCUCGUCCAGC	chr14:103396974-103397254(+)$1	280	106	126	13.7035
CCUGACCAACUCCUCAGGUG	chr17:76967606-76967878(-)$1	272	193	213	13.7963
UCUGUAGCCUAAAACGAAUG	chr10:102120829-102121109(+)$1	280	198	218	14.5994
CAGCCCAGAGCCUGGCUGCC	chr15:72491686-72491938(-)$1	252	130	150	13.5563
CUCUCUCCUAGCUGAGUAAA	chr6:31913032-31913335(+)$1	303	195	215	14.0773
CGCAGCCCCAUCUUUGUCCG	chr17:20946055-20946355(-)$1	300	55	75	14.2339
UCUCCUGCUCCUCGGACGAG	chr17:76967849-76968123(-)$1	274	188	208	14.8881
ACCAGAACGCACCCCACUGG	chr12:57606560-57606822(+)$1	262	47	67	14.1317
cccgccgccgccCGCGCGCC	chrX:152953735-152953989(+)$1	254	23	43	14.7896
GCUGUUCUCUCCCGCUGUGC	chr11:2159838-2160060(-)$1	222	194	214	14.3682
CCCUCUCUCCCCCGAGGUGG	chr12:113826589-113826901(+)$1	312	18	38	13.8212
GUCCCCACCCCCAGGGACAC	chr6:41566845-41567093(+)$1	248	6	26	13.7634
UGGUCCCCUCUCUGGCUCUG	chr2:220403765-220404038(-)$1	273	57	77	14.2258
GUGUGCCAUGUCUCCCAUAC	chr22:21141801-21142072(+)$1	271	154	174	13.8179
CUUUGUGUGUAUUCAGAGGC	chr10:102122259-102122471(+)$1	212	66	86	13.8158
GCCUGCCCCUCCCCAGAGUA	chr9:35697469-35697762(-)$1	293	184	204	14.7595
CAGUGCACAUGUUCAGUGCC	chr17:42153302-42153604(+)$1	302	59	79	13.5221
GCCUAUCACCUCUUAUGCAC	chr20:23614376-23614643(-)$1	267	114	134	14.3682
UGCCAAAACAUGAUGGCCUC	chr11:120100125-120100406(+)$1	281	26	46	14.0636
GGCGUACCCCUCCACAGCCC	chr12:56555075-56555418(+)$1	343	40	60	14.1504
GCUAACAUCCCACUUAGCCG	chr6:34212862-34213083(+)$1	221	77	97	13.8791
GGGACAGUGGCUGGUCCCCA	chr11:2151430-2151650(-)$1	220	116	136	14.9357
UUAGCUCCUUCUUGCCAACC	chr19:49468547-49468809(+)$1	262	193	213	14.3682
UUGGUUUUUUUCUACUUGUG	chr10:73576920-73577184(-)$1	264	23	43	15.0098
AAUGGAAAUAAAGCUUUUUG	chr19:49469950-49470188(+)$1	238	161	181	13.9822
GGGCCCCAGCCCCGGCCCCC	chr16:28834334-28834598(+)$1	264	181	201	12.9856
GCCUGCUCCUGUCCAGCCAG	chr14:23794781-23795071(+)$1	290	155	175	14.5112
CGGUGAACCCUGAUACCAGG	chr19:49426063-49426312(+)$1	249	175	195	13.4912
CCUACUGGCGUAUGUGGCUG	chr19:54377684-54378057(+)$1	373	7	27	13.4248
GACUCUGGCCCCUGAUGUCU	chr1:160968345-160968613(-)$1	268	6	26	13.7943
cccCGCCAUGCAACGGGAUU	chr17:80036909-80037170(-)$1	261	212	232	14.0636
UGCCUCCCUUCUCAGGCUGG	chr17:40931357-40931627(+)$1	270	101	121	14.2953
UUUAGGAACACAGUUGGAGG	chr6:7883223-7883468(-)$1	245	87	107	12.8641
GUGGCUCCCGCCUGUCCGGC	chr19:1497434-1497770(+)$1	336	10	30	14.8082
CGGGUCAGUUCCAGCCUUCC	chr11:64895410-64895672(-)$1	262	20	40	14.4602
UCGCCUGCUCUCCGGCGGAG	chr11:2160426-2160671(-)$1	245	50	70	14.0847
UGGGGGGUUCCUGCUCUGCC	chr16:28848053-28848325(+)$1	272	232	252	14.9357
UCCCCUCCAACCUGGGGGGC	chr19:13054834-13055084(+)$1	250	192	212	14.5612
CUUUCUCUUCCCUGAACGUU	chr10:102122187-102122436(+)$1	249	91	111	15.1242
CUCUCUCCUAGCUGAGUAAA	chr6:31913198-31913486(+)$1	288	29	49	14.0773
GUUCUGAAAUUAAAGUAUGC	chr6:44221323-44221606(+)$1	283	249	269	14.9795
GGCCCCCUCCUCCGGGUUAG	chr19:18642713-18643006(-)$1	293	123	143	14.5612
UGGGGGGUUCCUGCUCUGCC	chr16:28848181-28848430(+)$1	249	104	124	14.9357
AAGCAUCCCACCCUGCAGUU	chr19:18642528-18642803(-)$1	275	214	234	14.8968
CAGGGUGACCUGCCCcugcc	chr19:51857403-51857773(-)$1	370	22	42	13.6212
AAGCUGUAAAAUGAGCUUCC	chr17:73842180-73842480(-)$1	300	237	257	12.9856
CCGCCAUGACGGAGGCGGGU	chr2:172016901-172017274(-)$1	373	254	274	13.8158
GGGGACCAGGGCCUCUCCUG	chr7:2703826-2704072(+)$1	246	195	215	14.5612
ACUCCACAGUAUGGGACCCU	chr19:12907696-12907979(-)$1	283	202	222	15.3379
GCUCCCUUCCUCCGCAGCGC	chr16:28845822-28846107(+)$1	285	4	24	14.2316
UUUCCCAACCCCAGGAAAGG	chr12:56495787-56496065(+)$1	278	253	273	14.5612

#DB
(((((........)))))..	chr17:79801547-79801814(-)$1	1	137	157	13.4339
((.((........))..)))	chr22:43015088-43015372(-)$1	1	57	77	13.6391
(((((........)))))))	chr12:56992104-56992368(-)$1	1	67	87	14.5612
((.((........))...))	chr17:73842630-73842936(-)$1	1	228	248	14.8199
(((((........))).)).	chr2:68479301-68479572(-)$1	1	232	252	12.8810
((.((........)).))))	chr12:58141967-58142272(-)$1	1	244	264	14.7691
.((((........))))...	chr19:17452768-17453050(+)$1	1	16	36	14.4908
((.((........)).))))	chr20:23614336-23614576(-)$1	1	47	67	14.3682
.((((........))))..)	chr19:36640813-36641108(+)$1	1	214	234	14.2495
.((((........)))))))	chr1:236140672-236141020(-)$1	1	224	244	14.0971
.((((........))))..)	chr17:80036809-80037033(-)$1	1	75	95	14.0636
(((((........)))))))	chr11:2151343-2151570(-)$1	1	36	56	14.9357
.((((........))))(((	chr19:811243-811514(+)$1	1	92	112	12.8953
..(((........)))...)	chr11:2151451-2151670(-)$1	1	21	41	15.3354
(((((........)))))).	chr1:226033017-226033316(+)$1	1	199	219	13.6359
(.(.(........).).)))	chr14:103396974-103397254(+)$1	1	106	126	13.7035
(((((........)))))))	chr17:76967606-76967878(-)$1	1	193	213	13.7963
((.((........))))).)	chr10:102120829-102121109(+)$1	1	198	218	14.5994
(((((........)))))))	chr15:72491686-72491938(-)$1	1	130	150	13.5563
..(((........)))...)	chr6:31913032-31913335(+)$1	1	195	215	14.0773
.((((........)))).)(	chr17:20946055-20946355(-)$1	1	55	75	14.2339
(.(((........))).)))	chr17:76967849-76968123(-)$1	1	188	208	14.8881
(...(........)...)))	chr12:57606560-57606822(+)$1	1	47	67	14.1317
..(((........))).)))	chrX:152953735-152953989(+)$1	1	23	43	14.7896
((.((........)).))))	chr11:2159838-2160060(-)$1	1	194	214	14.3682
(((((........)))).))	chr12:113826589-113826901(+)$1	1	18	38	13.8212
(((((........))))).)	chr6:41566845-41567093(+)$1	1	6	26	13.7634
.((((........))))..)	chr2:220403765-220404038(-)$1	1	57	77	14.2258
(((.(........).)))))	chr22:21141801-21142072(+)$1	1	154	174	13.8179
(((((........)))))).	chr10:102122259-102122471(+)$1	1	66	86	13.8158
(((((........))).)))	chr9:35697469-35697762(-)$1	1	184	204	14.7595
((.((........)).))))	chr17:42153302-42153604(+)$1	1	59	79	13.5221
((.((........)).))))	chr20:23614376-23614643(-)$1	1	114	134	14.3682
.((((........))))..)	chr11:120100125-120100406(+)$1	1	26	46	14.0636
(((((........)).))).	chr12:56555075-56555418(+)$1	1	40	60	14.1504
(((((........))))))(	chr6:34212862-34213083(+)$1	1	77	97	13.8791
(((((........)))))))	chr11:2151430-2151650(-)$1	1	116	136	14.9357
((.((........)).))))	chr19:49468547-49468809(+)$1	1	193	213	14.3682
(.(((........))).)))	chr10:73576920-73577184(-)$1	1	23	43	15.0098
((.((........)).))))	chr19:49469950-49470188(+)$1	1	161	181	13.9822
(((((........)))))).	chr16:28834334-28834598(+)$1	1	181	201	12.9856
(.(((........))).)))	chr14:23794781-23795071(+)$1	1	155	175	14.5112
(((((........)))).))	chr19:49426063-49426312(+)$1	1	175	195	13.4912
((.((........)))).))	chr19:54377684-54378057(+)$1	1	7	27	13.4248
(((((........)).))))	chr1:160968345-160968613(-)$1	1	6	26	13.7943
.((((........))))..)	chr17:80036909-80037170(-)$1	1	212	232	14.0636
.((((........)))).))	chr17:40931357-40931627(+)$1	1	101	121	14.2953
(((((........)))))))	chr6:7883223-7883468(-)$1	1	87	107	12.8641
(.(((........)))))))	chr19:1497434-1497770(+)$1	1	10	30	14.8082
.((((........))))...	chr11:64895410-64895672(-)$1	1	20	40	14.4602
(((((........))).)))	chr11:2160426-2160671(-)$1	1	50	70	14.0847
(((((........)))))))	chr16:28848053-28848325(+)$1	1	232	252	14.9357
(((((........)))))))	chr19:13054834-13055084(+)$1	1	192	212	14.5612
(.(((........))).).)	chr10:102122187-102122436(+)$1	1	91	111	15.1242
..(((........)))...)	chr6:31913198-31913486(+)$1	1	29	49	14.0773
((.((........))...))	chr6:44221323-44221606(+)$1	1	249	269	14.9795
(((((........)))))))	chr19:18642713-18643006(-)$1	1	123	143	14.5612
(((((........)))))))	chr16:28848181-28848430(+)$1	1	104	124	14.9357
..(((........))).)))	chr19:18642528-18642803(-)$1	1	214	234	14.8968
(((((........))))).)	chr19:51857403-51857773(-)$1	1	22	42	13.6212
(((((........)))))).	chr17:73842180-73842480(-)$1	1	237	257	12.9856
(((((........)))))).	chr2:172016901-172017274(-)$1	1	254	274	13.8158
(((((........)))))))	chr7:2703826-2704072(+)$1	1	195	215	14.5612
..(((........)))...)	chr19:12907696-12907979(-)$1	1	202	222	15.3379
(((.(........).))).)	chr16:28845822-28846107(+)$1	1	4	24	14.2316
(((((........)))))))	chr12:56495787-56496065(+)$1	1	253	273	14.5612

#PSSM
e : 0.15	f : 0.15	g : 0.10	c : 0.09	! : 0.09	d : 0.07	" : 0.06	= : 0.06	b : 0.04	[ : 0.04	h : 0.04	& : 0.03	: : 0.01	# : 0.01	a : 0.01	
d : 0.24	e : 0.13	f : 0.13	g : 0.10	[ : 0.09	c : 0.06	= : 0.06	" : 0.04	b : 0.03	! : 0.03	& : 0.03	h : 0.03	
c : 0.24	d : 0.21	[ : 0.18	f : 0.13	g : 0.07	e : 0.06	= : 0.06	a : 0.01	" : 0.01	
b : 0.21	c : 0.21	d : 0.19	f : 0.12	g : 0.07	e : 0.06	= : 0.06	[ : 0.04	" : 0.01	
b : 0.21	c : 0.21	d : 0.19	f : 0.12	g : 0.07	e : 0.06	= : 0.06	a : 0.06	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
b : 0.21	c : 0.21	d : 0.19	f : 0.12	g : 0.07	e : 0.06	= : 0.06	a : 0.06	
b : 0.21	c : 0.21	d : 0.19	f : 0.12	g : 0.07	e : 0.06	= : 0.06	] : 0.04	3 : 0.01	
c : 0.24	d : 0.19	] : 0.13	f : 0.13	g : 0.07	e : 0.06	= : 0.06	3 : 0.04	2 : 0.01	a : 0.01	b : 0.01	
d : 0.22	] : 0.15	f : 0.13	e : 0.12	3 : 0.10	g : 0.09	= : 0.06	c : 0.06	2 : 0.01	h : 0.01	b : 0.01	
e : 0.18	f : 0.16	3 : 0.12	g : 0.09	d : 0.07	2 : 0.07	c : 0.07	] : 0.07	= : 0.06	h : 0.04	b : 0.01	a : 0.01	
f : 0.16	e : 0.13	g : 0.10	2 : 0.09	d : 0.09	c : 0.09	3 : 0.09	] : 0.07	= : 0.06	h : 0.04	b : 0.03	a : 0.01	
e : 0.16	g : 0.15	c : 0.15	b : 0.10	d : 0.09	= : 0.06	2 : 0.04	: : 0.04	f : 0.04	h : 0.04	3 : 0.03	] : 0.03	a : 0.01	D : 0.01	

#score	936.7756823148281
#seq	66
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_transcript_m1_run2.txt

#BEAR
dddggggggg!!dddd[cccmmmmccc]dddd22gggggg	chr10:99218309-99218576(-)$1	267	132	172	11.1489
"""ccc####iiiiiiiiiooooooiiiiiiiii333ccc	chrX:153670357-153670605(+)$1	248	98	138	16.4680
$$$$dddd"""ffffffcccooooooccc]ffffff333d	chr16:31202048-31202261(+)$1	213	154	194	12.9541
ee[a[dddd[a!!eeeeeooooooeeeee22a]dddd]a]	chr22:50892844-50893105(-)$1	261	164	204	12.0747
ddd[bbggggggg"""ddddnnnnndddd]ggggggg]bb	chr8:145699230-145699474(+)$1	244	38	78	12.7624
bb[ccc[bb[bb!!ccccccmmmmccc]ccc4444bb]bb	chr6:160176286-160176642(+)$1	356	170	210	11.1601
b[dddd[ccc"""ccc[cccnnnnnccc22ccc333ccc]	chr19:7707985-7708233(+)$1	248	78	118	15.6567
=====!!ccc!!eeeeecccnnnnnccc]eeeeeccc]==	chr9:117063861-117064079(+)$1	218	132	172	14.9367
c]a:::==========[cccnnnnnccc]==========E	chr11:66372863-66373164(+)$1	301	251	291	12.3709
f]eeeee==========[a[bblllbb]a]==========	chr3:48603992-48604268(-)$1	276	206	246	12.5838
===========iiiiiiiiimmmmiiiiiiiii4444===	chr17:79861245-79861477(-)$1	232	147	187	14.3311
::eeeee[ccca!!ffffffnnnnnffffff22a333ccc	chr7:73009924-73010142(-)$1	218	86	126	12.1541
eeeeeiiiiiiiii####cccooooooccciiiiiiiii:	chr16:87367437-87367757(-)$1	320	279	319	12.5169
:hhhhhhhh[a!!ccc!!aooooooa22ccc22a]hhhhh	chr16:70696096-70696337(-)$1	241	121	161	11.4717
g"""bb####ggggggg[bbnnnnnbb]ggggggg22bb>	chr19:12778877-12779241(-)$1	364	246	286	13.4005
ddd:ccc[gggggggeeeeeooooooeeeee333gggggg	chr14:24612748-24612981(-)$1	233	168	208	13.1308
:dddd"""ccc!!gggggggoooooogggggggccc333d	chr22:50356551-50356822(+)$1	271	172	212	14.5592
b[ggggggg[a!!gggggggnnnnnggggggg]a]ggggg	chr12:123467167-123467492(+)$1	325	268	308	15.7196
hhhhh!!ccceeeeea[cccnnnnnccc]a]eeeee]ccc	chr22:25023728-25024038(+)$1	310	257	297	12.8441
gggggg[==========[bboooooobb]==========2	chr19:59061046-59061290(+)$1	244	151	191	15.7570
:ffffff"""eeeee[cccooooooccc]eeeee]fffff	chr9:140343216-140343474(-)$1	258	156	196	12.6148
=="""dddd"""bb[eeeeeooooooeeeeebbdddd22=	chr19:42409237-42409505(+)$1	268	75	115	12.1136
iiia[bb"""eeeee"""bbnnnnnbb22eeeee4444bb	chr1:40768703-40768914(-)$1	211	117	157	13.0534
fffff"""ccc!!gggggggooooooggggggg55555cc	chr9:117046905-117047147(+)$1	242	68	108	12.2591
gggbb[ffffff[eeeee[annnnna]eeeeeffffff]b	chr19:2231924-2232197(+)$1	273	194	234	11.4220
!!eeeee!!ddddgggggggnnnnnggggggg>>>>>>>>	chr2:232672560-232672826(+)$1	266	34	74	12.7204
gggg[dddd[ddddffffffooooooffffff]ddddddd	chr20:62327177-62327449(+)$1	272	169	209	11.0154
ffffff[bb"""iiiiiiiiillliiiiiiiii22bb]ff	chr11:47281235-47281631(+)$1	396	322	362	12.2563
::===========ccc[bboooooobb]ccc333======	chr21:46908231-46908457(+)$1	226	123	163	14.1855
ee[ffffff!!dddd!!cccnnnnnccc22dddd4444ff	chr20:39802824-39803051(+)$1	227	135	175	13.5376
ddd!!dddd[ffffff[abboooooobb]a]ffffff]dd	chr3:48445337-48445560(-)$1	223	15	55	11.4056
eeeee[a!!bb!!eeeeeooooooeeeee]bb]a]eeeee	chr2:242513230-242513496(+)$1	266	4	44	12.3182
d[ggggggg####ccc[bboooooobb]ccc7777777gg	chr14:68050409-68050699(+)$1	290	129	169	11.9961
ffbb!!ccc"""bb[eeeeennnnneeeee]bb]ccc]bb	chr19:5691944-5692231(-)$1	287	207	247	12.6815
eeeee"""ccc####a[cccmmmmccc]accc4444eeee	chr3:52840873-52841084(+)$1	211	43	83	12.8204
=============="""bboooooobb22===========	chr20:61467501-61467746(+)$1	245	165	205	15.8026
g[eeeee####bb[a[ddddnnnnndddd]a]bb]eeeee	chr18:72187821-72188113(+)$1	292	126	166	12.9308
fffff[ccc[bb[bb[ddddnnnnndddd]bb]bb]ccc]	chr12:48374249-48374483(-)$1	234	158	198	12.0216
b[ggggggg[bb[eeeeeooooooeeeeebb]ggggggg2	chr9:116854759-116855022(-)$1	263	183	223	11.9605
bb[bb[eeeee[gggggggooooooggggggg22eeeee]	chr20:409537-409792(+)$1	255	166	206	12.4429
ggg[ccc[a"""ccc!!cccnnnnnccc]ccc333a]ccc	chr11:65306708-65306957(-)$1	249	24	64	16.7025
!!bb!!ffffffdddd[cccooooooccc333dddd22ff	chr21:45745822-45746043(+)$1	221	27	67	12.4239
:ffffff!!bb!!ccc[bboooooobbccc22bb22ffff	chr6:109768477-109768737(-)$1	260	82	122	11.9701
!!eeeee!!bb!!a[ddddoooooodddd]a22bb]eeee	chr9:117072794-117073036(+)$1	242	179	219	13.1492
ggggccc"""a"""cccqqqqqqqqccc333a333ccc]g	chr2:85771364-85771597(+)$1	233	23	63	11.7797
cc[ccc!!ccc!!a[eeeeemmmmeeeee]accc22ccc2	chr4:1808466-1808704(+)$1	238	168	208	12.0091
hhhdddd[gggggggbbcccooooooccc]bb333ggggg	chr3:48445644-48445889(-)$1	245	138	178	13.6493
ddd[bb$$$$$iiiiiiiiinnnnniiiiiiiii22bb]d	chr16:571722-571993(+)$1	271	68	108	13.3011
iiiiiiiii$$$$$ccc[cccmmmmcccccciiiiiiiii	chr3:184105069-184105319(+)$1	250	39	79	12.2540
[eeeeeccc!!dddd[ddddnnnnnddddddddccc333e	chr11:71948310-71948563(+)$1	253	171	211	12.7032
""bb[ccc!!ccc[a[ddddnnnnndddd]a]ccc4444c	chr19:48258643-48258883(+)$1	240	74	114	14.1110
d[dddd[eeeee"""cccooooooccc333eeeee22ddd	chr9:116997809-116998023(+)$1	214	37	77	11.5491
[ffffff[ccc!!gggggggooooooggggggg4444ccc	chr22:50658049-50658311(-)$1	262	66	106	15.5299
eee[==========####bbnnnnnbb333==========	chr1:900620-900948(+)$1	328	158	198	15.7218
b"""ccc####dddd[ddddnnnnndddd]dddd4444cc	chr10:101605281-101605518(+)$1	237	37	77	13.9015
c[dddd[ccc!!ffffffcccmmmmccc333ffffff22c	chrX:152961546-152961792(+)$1	246	80	120	10.9359
dddd$$$$$cccbb[eeeeennnnneeeee]bb]ccc333	chr1:48708100-48708365(+)$1	265	50	90	11.8653
gggggg"""ccc!!ffffffooooooffffff]ccc]ggg	chr17:40266442-40266710(-)$1	268	35	75	14.3441
:ggggggg[ccc[a[eeeeennnnneeeee22a]ccc]gg	chr22:31329946-31330197(-)$1	251	0	40	13.2252

#otherMatches

#Seq PSSM
UCAGUCCUGGCCUAGACUGUUCUGACAAUCUAACCUGGGA	chr10:99218309-99218576(-)$1	267	132	172	11.1489
AGACAUCUACGUGUGCAUGAUCUCCUAUGCACACAACGUG	chrX:153670357-153670605(+)$1	248	98	138	16.4680
AGAAUCCUUAAUUUUUCAGCGGGGAGGCUCGGGGAACAUA	chr16:31202048-31202261(+)$1	213	154	194	12.9541
GGUGCGUGUGAUCCCAGAGCAGGGUCUGGCCUGGCACCCC	chr22:50892844-50893105(-)$1	261	164	204	12.0747
GCUCUCCCUCCCCCAGCCUGGAGCACGGGAGGGGAGGUGA	chr8:145699230-145699474(+)$1	244	38	78	12.7624
GUAUGAAAGUGUAGACUCUCCCACGGGCAGUGAAAACUCU	chr6:160176286-160176642(+)$1	356	170	210	11.1601
UGCAUCUAGCAGAUGAUUGUAUGAAGCACUUCAAGGGCUC	chr19:7707985-7708233(+)$1	248	78	118	15.6567
CCCGGUAGGUAACUGAGUGCUGGGUGCAUCUUGGACUCCU	chr9:117063861-117064079(+)$1	218	132	172	14.9367
GGAACCCAGGGGUGGGGGCCAAACAGGUACCCACCCCUGA	chr11:66372863-66373164(+)$1	301	251	291	12.3709
GAUCGGGGUGACUUCUGUUGUCCCUGAGGUCAGAGGUCAC	chr3:48603992-48604268(-)$1	276	206	246	12.5838
AGUGCUGCUGCCUGGGCCCGGAGGUGGGCCUGGCCCCGUA	chr17:79861245-79861477(-)$1	232	147	187	14.3311
CCCAUCACACACCAGCGUUUUGACCAGAUGCGAGACAUGU	chr7:73009924-73010142(-)$1	218	86	126	12.1541
GGGUACUGGGGCCUGAAGGUGGGACAGCAUGGGCUUCAGC	chr16:87367437-87367757(-)$1	320	279	319	12.5169
GGAGUCCUGGUGGCCCCGCAGGUCAGGAGGGAAAGCAGGG	chr16:70696096-70696337(-)$1	241	121	161	11.4717
UCCUGCCUCCCUUCCCCUGCCUGCUGCUGGGGGAGAUGCU	chr19:12778877-12779241(-)$1	364	246	286	13.4005
UGGACCUGAGGGCCUUCUAUGUGAGUGUGGAGUAAGGCUU	chr14:24612748-24612981(-)$1	233	168	208	13.1308
CCUCGACCCUGAUGACGUGGCCAGCACCACGUCCAGCAGC	chr22:50356551-50356822(+)$1	271	172	212	14.5592
UUAAAGGCCCCCUGGAUAGACUUUCUCUGUUCUGUGGCUU	chr12:123467167-123467492(+)$1	325	268	308	15.7196
GAGGGGCGGGUGUCCUGGGCAGGCAGCUGACGGGCAUCCC	chr22:25023728-25024038(+)$1	310	257	297	12.8441
GUGGCCAAGCUCUCACCAGCCAACCAGCGGGUGAGGGCUG	chr19:59061046-59061290(+)$1	244	151	191	15.7570
UGCCCAGCCUGGCUCUGUCUACACUGGCCGAGUCUCUGGG	chr9:140343216-140343474(-)$1	258	156	196	12.6148
GCCUUUCUCCCCAGCUGGUGUGCUCUCAUCACUGAGACUG	chr19:42409237-42409505(+)$1	268	75	115	12.1136
GGGCAGCAACCCCUCCUCACAGUCAGUUCGAGGGCAUCGC	chr1:40768703-40768914(-)$1	211	117	157	13.0534
CUCACUUCCCUCCUUCUUGUUUGCCUGCAGGGACACAAAG	chr9:117046905-117047147(+)$1	242	68	108	12.2591
UCCGUGGGCAGCUGGCGGGGACCUGUGCUGCUGCUGCUGA	chr19:2231924-2232197(+)$1	273	194	234	11.4220
UCAGACACUGCCCAGCUUCCCUCCAGGAGGUUCUUGUCUC	chr2:232672560-232672826(+)$1	266	34	74	12.7204
CGGGGCCCAUGGUUGGUCCCUGCGGUGGGACCGGAUCUGG	chr20:62327177-62327449(+)$1	272	169	209	11.0154
UAGGGGUCCAGAUUCCAGGUCCUGGAUCUGGAAGAGGUUC	chr11:47281235-47281631(+)$1	396	322	362	12.2563
UAAGGUCAGUGACGGAUAUGUCUGGGUUUCUGUGGUUGCU	chr21:46908231-46908457(+)$1	226	123	163	14.1855
GAUGGAGGGGUGCUAGAGCCAGGAAGGCAGUGGCUAGGUC	chr20:39802824-39803051(+)$1	227	135	175	13.5376
GGAUUCGGAGAGGAAGGAGGAGAGCCCCAUGCUUCCUGUC	chr3:48445337-48445560(-)$1	223	15	55	11.4056
GCCUUCCCUUGACGCCUACAUUUCUAGGCACAUGUGAGGC	chr2:242513230-242513496(+)$1	266	4	44	12.3182
CAGGUCCUAGACAGGUUCCACCCCAGGCGCUAUAGACAUG	chr14:68050409-68050699(+)$1	290	129	169	11.9961
AGGCGGCGGAUGUCAGGCCCUGUCUGGGCCAGAACUGAGC	chr19:5691944-5692231(-)$1	287	207	247	12.6815
GCCUCACAGUUAAUGGGCAGAUCACUGGCGACAAGAGAGG	chr3:52840873-52841084(+)$1	211	43	83	12.8204
GGGGAAGCCGGGAGUUCCGGUACGUCGCUUUUCCGGCUUU	chr20:61467501-61467746(+)$1	245	165	205	15.8026
uacucaggacacugacguaggaggguugcuugagacugag	chr18:72187821-72188113(+)$1	292	126	166	12.9308
UGCACUCCAAGAAUUGUUCCCUCAAGGAAGGGCUCCUGGC	chr12:48374249-48374483(-)$1	234	158	198	12.0216
CAAGUGCCCAAGAGAGAGGUGGGUCUCUCCUGGGGCACUG	chr9:116854759-116855022(-)$1	263	183	223	11.9605
GCUGGGUCACCAAGGGCCCACGCUGGGGCCCUGGGGUGAG	chr20:409537-409792(+)$1	255	166	206	12.4429
CAGAUGAGGACAGUUCAGAGGAGGAUUCAGACGAGUGUCG	chr11:65306708-65306957(-)$1	249	24	64	16.7025
GCUCCAACCCCCUUUGACCGGAACUAUGGGACCAAGCUGG	chr21:45745822-45746043(+)$1	221	27	67	12.4239
UUACCUCCUUAGAUGGAGGCCGAGACCCCAAGUACUGAGG	chr6:109768477-109768737(-)$1	260	82	122	11.9701
GACCUCUGACCUCGUGGCCACUCUAGGCCUCACGGAGGAG	chr9:117072794-117073036(+)$1	242	179	219	13.1492
CCUGUAACUUGAUCCAUUUCUAAUUAUGUAGCUCUUUGUC	chr2:85771364-85771597(+)$1	233	23	63	11.7797
CGUGUCCUUACCGUGACGUCCACCGACGUGAGUGCUGGCU	chr4:1808466-1808704(+)$1	238	168	208	12.0091
CUGGCCUCGGCCCUGCUGGAUCCACCUCCUAGACCCGGGG	chr3:48445644-48445889(-)$1	245	138	178	13.6493
ACCCUGUUUUCUUCUGGGUGUGUCUCACUUAGAAAUCGUG	chr16:571722-571993(+)$1	271	68	108	13.3011
GGGCCCAGCUGAUGAGCUCAUACUAAUGGCUGCUGGGCCC	chr3:184105069-184105319(+)$1	250	39	79	12.2540
UGCCCCCCAGCCUGGAUCCUUUACCAGGGCCAGUGGUCCG	chr11:71948310-71948563(+)$1	253	171	211	12.7032
gaggcggcggcaggcgcggcgggaggcUGAGGCUGACAAG	chr19:48258643-48258883(+)$1	240	74	114	14.1110
CAUUGUAACCUUCUUUGCUGGUGUGUACUUAGGGUGAACA	chr9:116997809-116998023(+)$1	214	37	77	11.5491
GGUUCUGAGGCUGGUGUUUUGUUAGGAAGACACAGCUGCC	chr22:50658049-50658311(-)$1	262	66	106	15.5299
CCUGCGUGUCCUCCCCUCCACUGCCUGCAUGGGGGGCGCG	chr1:900620-900948(+)$1	328	158	198	15.7218
CUAAAUAACUUUUCCCCAAGAAUUAUUUGUGGAACUAAUG	chr10:101605281-101605518(+)$1	237	37	77	13.9015
GAAAAGUGCAUGGUGGGGGCCUCGGGGCUGUCCCCACGCU	chrX:152961546-152961792(+)$1	246	80	120	10.9359
CUCGGAACUGCCCCCUCUCUGAGCUGGAGAAGGAGGCCCA	chr1:48708100-48708365(+)$1	265	50	90	11.8653
GAGGGGUUGUUGUUGGGGCUGGAGUUGGCCCCUCAGUCCC	chr17:40266442-40266710(-)$1	268	35	75	14.3441
CACGCUCCUCUUGCUCUAGGCUACCCCUAGUCGGAAGCGG	chr22:31329946-31330197(-)$1	251	0	40	13.2252

#DB
((((((((((..((((.(((....))).))))..))))))	chr10:99218309-99218576(-)$1	1	132	172	11.1489
...(((....(((((((((......)))))))))...)))	chrX:153670357-153670605(+)$1	1	98	138	16.4680
....((((...(((((((((......))).))))))...)	chr16:31202048-31202261(+)$1	1	154	194	12.9541
((.(.((((.(..(((((......)))))..).)))).).	chr22:50892844-50893105(-)$1	1	164	204	12.0747
(((.(((((((((...((((.....)))).))))))).))	chr8:145699230-145699474(+)$1	1	38	78	12.7624
((.(((.((.((..((((((....))).)))....)).))	chr6:160176286-160176642(+)$1	1	170	210	11.1601
(.((((.(((...(((.(((.....)))..)))...))).	chr19:7707985-7708233(+)$1	1	78	118	15.6567
(((((..(((..((((((((.....))).)))))))).))	chr9:117063861-117064079(+)$1	1	132	172	14.9367
).)...((((((((((.(((.....))).)))))))))))	chr11:66372863-66373164(+)$1	1	251	291	12.3709
).)))))((((((((((.(.((...)).).))))))))))	chr3:48603992-48604268(-)$1	1	206	246	12.5838
((((((((((((((((((((....)))))))))....)))	chr17:79861245-79861477(-)$1	1	147	187	14.3311
..(((((.((((..((((((.....))))))..)...)))	chr7:73009924-73010142(-)$1	1	86	126	12.1541
)))))(((((((((....(((......)))))))))))).	chr16:87367437-87367757(-)$1	1	279	319	12.5169
.((((((((.(..(((..(......)..)))..).)))))	chr16:70696096-70696337(-)$1	1	121	161	11.4717
(...((....(((((((.((.....)).)))))))..)).	chr19:12778877-12779241(-)$1	1	246	286	13.4005
))).(((.((((((((((((......)))))...))))))	chr14:24612748-24612981(-)$1	1	168	208	13.1308
.((((...(((..(((((((......))))))))))...)	chr22:50356551-50356822(+)$1	1	172	212	14.5592
(.(((((((.(..(((((((.....))))))).).)))))	chr12:123467167-123467492(+)$1	1	268	308	15.7196
(((((..(((((((((.(((.....))).).))))).)))	chr22:25023728-25024038(+)$1	1	257	297	12.8441
((((((.((((((((((.((......)).)))))))))).	chr19:59061046-59061290(+)$1	1	151	191	15.7570
.((((((...(((((.(((......))).))))).)))))	chr9:140343216-140343474(-)$1	1	156	196	12.6148
((...((((...((.(((((......)))))))))))..)	chr19:42409237-42409505(+)$1	1	75	115	12.1136
((((.((...(((((...((.....))..)))))....))	chr1:40768703-40768914(-)$1	1	117	157	13.0534
(((((...(((..(((((((......))))))).....))	chr9:117046905-117047147(+)$1	1	68	108	12.2591
)))((.((((((.(((((.(.....).))))))))))).)	chr19:2231924-2232197(+)$1	1	194	234	11.4220
..(((((..(((((((((((.....)))))))........	chr2:232672560-232672826(+)$1	1	34	74	12.7204
((((.((((.((((((((((......)))))).)))))))	chr20:62327177-62327449(+)$1	1	169	209	11.0154
((((((.((...(((((((((...)))))))))..)).))	chr11:47281235-47281631(+)$1	1	322	362	12.2563
..((((((((((((((.((......)).)))...))))))	chr21:46908231-46908457(+)$1	1	123	163	14.1855
((.((((((..((((..(((.....)))..))))....))	chr20:39802824-39803051(+)$1	1	135	175	13.5376
(((..((((.((((((.(((......)).).)))))).))	chr3:48445337-48445560(-)$1	1	15	55	11.4056
(((((.(..((..(((((......))))).)).).)))))	chr2:242513230-242513496(+)$1	1	4	44	12.3182
(.(((((((....(((.((......)).))).......))	chr14:68050409-68050699(+)$1	1	129	169	11.9961
((((..(((...((.(((((.....))))).)).))).))	chr19:5691944-5692231(-)$1	1	207	247	12.6815
(((((...(((....(.(((....))).))))....))))	chr3:52840873-52841084(+)$1	1	43	83	12.8204
((((((((((((((...((......))..)))))))))))	chr20:61467501-61467746(+)$1	1	165	205	15.8026
(.(((((....((.(.((((.....)))).).)).)))))	chr18:72187821-72188113(+)$1	1	126	166	12.9308
(((((.(((.((.((.((((.....)))).)).)).))).	chr12:48374249-48374483(-)$1	1	158	198	12.0216
(.(((((((.((.(((((......))))))).))))))).	chr9:116854759-116855022(-)$1	1	183	223	11.9605
((.((.(((((.(((((((......)))))))..))))).	chr20:409537-409792(+)$1	1	166	206	12.4429
(((.(((.(...(((..(((.....))).)))...).)))	chr11:65306708-65306957(-)$1	1	24	64	16.7025
..((..((((((((((.(((......)))...))))..))	chr21:45745822-45746043(+)$1	1	27	67	12.4239
.((((((..((..(((.((......)))))..))..))))	chr6:109768477-109768737(-)$1	1	82	122	11.9701
..(((((..((..(.((((......)))).)..)).))))	chr9:117072794-117073036(+)$1	1	179	219	13.1492
(((((((...(...(((........)))...)...))).)	chr2:85771364-85771597(+)$1	1	23	63	11.7797
((.(((..(((..(.(((((....))))).))))..))).	chr4:1808466-1808704(+)$1	1	168	208	12.0091
)))((((.((((((((((((......))).))...)))))	chr3:48445644-48445889(-)$1	1	138	178	13.6493
(((.((.....(((((((((.....)))))))))..)).)	chr16:571722-571993(+)$1	1	68	108	13.3011
(((((((((.....(((.(((....)))))))))))))))	chr3:184105069-184105319(+)$1	1	39	79	12.2540
.((((((((..((((.((((.....)))))))))))...)	chr11:71948310-71948563(+)$1	1	171	211	12.7032
..((.(((..(((.(.((((.....)))).).)))....)	chr19:48258643-48258883(+)$1	1	74	114	14.1110
(.((((.(((((...(((......)))...)))))..)))	chr9:116997809-116998023(+)$1	1	37	77	11.5491
.((((((.(((..(((((((......)))))))....)))	chr22:50658049-50658311(-)$1	1	66	106	15.5299
(((.((((((((((....((.....))...))))))))))	chr1:900620-900948(+)$1	1	158	198	15.7218
(...(((....((((.((((.....)))).))))....))	chr10:101605281-101605518(+)$1	1	37	77	13.9015
(.((((.(((..(((((((((....)))...))))))..)	chrX:152961546-152961792(+)$1	1	80	120	10.9359
((((.....(((((.(((((.....))))).)).)))...	chr1:48708100-48708365(+)$1	1	50	90	11.8653
((((((...(((..((((((......)))))).))).)))	chr17:40266442-40266710(-)$1	1	35	75	14.3441
.(((((((.(((.(.(((((.....)))))..).))).))	chr22:31329946-31330197(-)$1	1	0	40	13.2252

#PSSM
d : 0.13	g : 0.13	: : 0.11	e : 0.10	b : 0.10	f : 0.08	= : 0.06	c : 0.05	! : 0.05	" : 0.03	h : 0.03	i : 0.03	[ : 0.03	$ : 0.01	
d : 0.11	e : 0.11	[ : 0.11	g : 0.11	f : 0.11	" : 0.06	= : 0.06	h : 0.05	! : 0.05	b : 0.03	] : 0.03	: : 0.03	i : 0.03	$ : 0.01	c : 0.01	
d : 0.16	e : 0.16	g : 0.16	f : 0.10	[ : 0.08	" : 0.06	= : 0.06	h : 0.05	b : 0.05	i : 0.03	$ : 0.01	a : 0.01	
g : 0.15	e : 0.15	f : 0.11	d : 0.10	b : 0.08	[ : 0.06	= : 0.06	c : 0.05	" : 0.05	a : 0.03	: : 0.03	h : 0.03	$ : 0.01	! : 0.01	i : 0.01	
e : 0.15	g : 0.11	c : 0.11	f : 0.11	d : 0.10	b : 0.08	= : 0.08	[ : 0.06	! : 0.05	h : 0.03	: : 0.01	" : 0.01	i : 0.01	$ : 0.01	
d : 0.15	c : 0.13	g : 0.11	e : 0.10	f : 0.08	b : 0.06	! : 0.06	= : 0.06	[ : 0.06	" : 0.05	i : 0.03	: : 0.01	h : 0.01	$ : 0.01	
c : 0.13	g : 0.10	d : 0.10	[ : 0.10	e : 0.10	f : 0.10	= : 0.08	" : 0.06	! : 0.05	# : 0.03	i : 0.03	$ : 0.03	h : 0.01	b : 0.01	a : 0.01	
c : 0.13	= : 0.11	" : 0.11	g : 0.10	d : 0.08	[ : 0.08	! : 0.08	# : 0.06	f : 0.05	b : 0.03	i : 0.03	e : 0.03	$ : 0.03	h : 0.01	
c : 0.22	g : 0.11	= : 0.11	" : 0.08	! : 0.08	# : 0.06	d : 0.06	f : 0.05	b : 0.03	i : 0.03	e : 0.03	$ : 0.03	h : 0.01	a : 0.01	[ : 0.01	
c : 0.22	" : 0.13	[ : 0.13	= : 0.11	# : 0.08	g : 0.06	! : 0.05	b : 0.05	f : 0.03	e : 0.03	$ : 0.03	i : 0.01	d : 0.01	
c : 0.16	= : 0.11	" : 0.10	b : 0.10	! : 0.08	e : 0.08	a : 0.06	g : 0.06	f : 0.05	# : 0.05	i : 0.03	d : 0.03	$ : 0.03	
! : 0.22	" : 0.10	= : 0.10	d : 0.08	i : 0.06	f : 0.06	g : 0.06	b : 0.06	e : 0.06	c : 0.06	# : 0.03	a : 0.01	[ : 0.01	$ : 0.01	
! : 0.22	d : 0.11	= : 0.10	i : 0.08	g : 0.08	e : 0.06	b : 0.06	[ : 0.06	f : 0.05	" : 0.05	# : 0.03	c : 0.03	$ : 0.01	
g : 0.15	e : 0.13	d : 0.10	c : 0.10	i : 0.08	= : 0.08	b : 0.06	f : 0.05	" : 0.05	! : 0.05	a : 0.05	[ : 0.03	# : 0.01	$ : 0.01	
c : 0.15	g : 0.15	e : 0.13	f : 0.10	[ : 0.10	d : 0.08	i : 0.06	" : 0.05	= : 0.05	# : 0.05	a : 0.03	b : 0.01	
e : 0.18	c : 0.15	g : 0.11	f : 0.10	[ : 0.10	i : 0.06	d : 0.05	" : 0.05	= : 0.05	# : 0.03	a : 0.03	! : 0.03	b : 0.01	
e : 0.18	[ : 0.16	d : 0.11	g : 0.11	f : 0.08	c : 0.08	i : 0.06	! : 0.05	= : 0.03	# : 0.03	" : 0.03	b : 0.01	
c : 0.23	e : 0.16	d : 0.11	g : 0.10	i : 0.06	[ : 0.06	f : 0.06	b : 0.06	# : 0.03	! : 0.01	" : 0.01	a : 0.01	q : 0.01	
c : 0.27	b : 0.15	d : 0.11	e : 0.10	g : 0.10	i : 0.06	o : 0.06	f : 0.05	a : 0.03	[ : 0.01	q : 0.01	
c : 0.25	o : 0.22	d : 0.10	e : 0.10	b : 0.08	g : 0.08	i : 0.05	f : 0.05	[ : 0.01	a : 0.01	q : 0.01	
o : 0.42	n : 0.38	m : 0.08	c : 0.05	b : 0.01	i : 0.01	q : 0.01	
o : 0.44	n : 0.38	m : 0.11	b : 0.01	l : 0.01	q : 0.01	
o : 0.44	n : 0.38	m : 0.11	l : 0.03	q : 0.01	
o : 0.44	n : 0.38	m : 0.11	l : 0.03	q : 0.01	
n : 0.38	o : 0.37	c : 0.06	e : 0.06	i : 0.03	m : 0.03	l : 0.01	q : 0.01	
c : 0.23	o : 0.22	b : 0.13	e : 0.11	d : 0.11	i : 0.06	g : 0.05	a : 0.03	f : 0.01	
c : 0.28	b : 0.16	e : 0.15	d : 0.11	g : 0.10	i : 0.06	f : 0.05	o : 0.01	2 : 0.01	] : 0.01	
c : 0.25	e : 0.16	] : 0.11	d : 0.11	g : 0.10	i : 0.06	f : 0.05	2 : 0.05	b : 0.03	3 : 0.03	
c : 0.16	e : 0.16	d : 0.13	] : 0.11	g : 0.11	i : 0.06	2 : 0.06	3 : 0.06	f : 0.05	a : 0.03	
] : 0.18	c : 0.15	e : 0.15	g : 0.11	3 : 0.08	i : 0.06	2 : 0.05	= : 0.05	f : 0.05	d : 0.03	a : 0.03	b : 0.01	
g : 0.13	c : 0.13	e : 0.11	i : 0.08	= : 0.08	d : 0.06	f : 0.06	] : 0.06	b : 0.06	a : 0.06	2 : 0.05	3 : 0.05	
g : 0.13	i : 0.10	e : 0.10	b : 0.10	f : 0.08	= : 0.08	2 : 0.08	d : 0.06	c : 0.06	3 : 0.05	] : 0.05	a : 0.03	4 : 0.01	7 : 0.01	
i : 0.10	] : 0.10	g : 0.10	2 : 0.08	e : 0.08	= : 0.08	3 : 0.08	b : 0.08	f : 0.06	d : 0.06	c : 0.05	4 : 0.03	> : 0.01	7 : 0.01	a : 0.01	
d : 0.10	3 : 0.10	e : 0.08	= : 0.08	c : 0.08	i : 0.06	f : 0.06	4 : 0.06	a : 0.06	b : 0.06	2 : 0.05	g : 0.05	] : 0.05	5 : 0.01	> : 0.01	7 : 0.01	
c : 0.13	4 : 0.11	3 : 0.10	= : 0.10	g : 0.08	] : 0.08	f : 0.06	d : 0.06	2 : 0.06	e : 0.05	i : 0.03	b : 0.03	5 : 0.01	> : 0.01	7 : 0.01	
c : 0.13	4 : 0.11	g : 0.10	= : 0.10	f : 0.08	2 : 0.08	d : 0.06	e : 0.06	3 : 0.05	b : 0.03	i : 0.03	] : 0.03	h : 0.01	5 : 0.01	> : 0.01	7 : 0.01	a : 0.01	
c : 0.13	g : 0.10	= : 0.10	4 : 0.10	3 : 0.08	f : 0.08	e : 0.08	d : 0.05	b : 0.05	2 : 0.05	] : 0.05	i : 0.03	h : 0.01	5 : 0.01	> : 0.01	7 : 0.01	
c : 0.15	] : 0.13	= : 0.11	g : 0.10	e : 0.08	3 : 0.06	4 : 0.06	f : 0.05	2 : 0.05	i : 0.03	b : 0.03	d : 0.03	h : 0.01	5 : 0.01	> : 0.01	7 : 0.01	
c : 0.16	g : 0.13	= : 0.13	b : 0.08	f : 0.08	e : 0.08	3 : 0.06	] : 0.05	d : 0.05	i : 0.03	2 : 0.03	a : 0.01	h : 0.01	> : 0.01	4 : 0.01	
c : 0.15	g : 0.13	= : 0.11	d : 0.10	b : 0.08	f : 0.08	e : 0.08	] : 0.06	2 : 0.05	> : 0.03	E : 0.01	: : 0.01	h : 0.01	i : 0.01	3 : 0.01	

#score	770.6882610532136
#seq	59
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YIO_GRWD1_CDS_m3_run2.txt

#BEAR
ee"""bbddddmmmmdddd]bb333e	chr10:99123510-99123763(-)$1	253	184	210	10.5833
ffff[ccccccmmmmccc]ccc333f	chr15:43483073-43483341(+)$1	268	171	197	11.7559
[ggggggg[bbmmmmbb]ggggggg]	chr3:196666024-196666316(-)$1	292	165	191	11.1316
:==========mmmm==========C	chr1:171509156-171509377(+)$1	221	165	191	10.4103
ffffff!!cccmmmmcccffffff22	chr17:79804204-79804433(-)$1	229	142	168	10.7783
ddeeeee[cccmmmmccc]eeeee]d	chr22:30974740-30975053(-)$1	313	277	303	10.3511
ggg!!ccc[bbmmmmbb]ccc]gggg	chr8:30510848-30511133(-)$1	285	213	239	11.1102
dddd"""cccooooooccc333dddd	chr2:70314935-70315157(+)$1	222	85	111	8.5482
dd[bb!!ddddmmmmdddd]bb]ddd	chr11:65733257-65733488(+)$1	231	59	85	10.3005
cc[a####cccmmmmccc333accc]	chr5:162898268-162898537(+)$1	269	115	141	13.4642
ffffff"""bbmmmmbb]ffffff]g	chr2:198267604-198267851(-)$1	247	144	170	10.3805
eee[ccc!!bbmmmmbb22ccc]eee	chr5:177634079-177634299(+)$1	220	142	168	11.0436
g[ccc!!ddddmmmmdddd]ccc22g	chr3:185404755-185405048(-)$1	293	61	87	11.9878
"""dddd[cccmmmmccc]dddd]cc	chr2:44201188-44201420(-)$1	232	144	170	10.7525
f[dddd!!cccmmmmccc22dddd]f	chr2:27604538-27604772(-)$1	234	141	167	11.5382
[a$$$$$ddddmmmmdddd4444a]c	chr14:78183742-78184005(+)$1	263	126	152	11.3401
cc[ccc[a[bbmmmmbb]a]ccc]cc	chr7:140477730-140477976(-)$1	246	106	132	11.6694
"""dddd[cccmmmmccc22dddd22	chr17:78360469-78360730(+)$1	261	194	220	11.1584
eeeee"""cccmmmmccc333eeeee	chr1:40205732-40206044(+)$1	312	283	309	12.3643
ggggg[a!!bbmmmmbb22a]ggggg	chr1:186304486-186304733(-)$1	247	203	229	11.8523
ffccc"""cccmmmmccc4444ccc]	chr19:59059156-59059373(+)$1	217	102	128	13.2785
===========mmmm===========	chr11:812661-812874(+)$1	213	81	107	12.6785
cc[dddd[cccmmmmccc22dddd22	chr17:2234139-2234400(-)$1	261	93	119	11.0275
fff[gggggggmmmmggggggg]fff	chr3:41274934-41275238(+)$1	304	66	92	10.2945
b[bb[ccc[bbmmmmbb4444cccbb	chr1:155931552-155931804(-)$1	252	105	131	10.7573
ffffa[a!!bbmmmmbb22a]a]fff	chr1:40036764-40037029(-)$1	265	103	129	11.2275
"eeeee"""bbmmmmbb4444eeeee	chr9:95050014-95050290(-)$1	276	43	69	11.1833
=======[cccmmmmccc]=======	chr1:85121413-85121622(-)$1	209	106	132	13.3559
c[cccccccccmmmmccc333ccc]c	chrX:75397471-75397812(+)$1	341	25	51	13.2462
bbccc[bbcccmmmmccc]bbccc]b	chr12:25031359-25031608(-)$1	249	122	148	10.5344
ggg[cccddddmmmmdddd4444ccc	chr12:133372636-133372904(-)$1	268	197	223	11.9351
bdddd!!ddddmmmmdddd4444ddd	chr1:180047594-180047846(+)$1	252	179	205	10.9848
c!!ccc!!cccmmmmccc22ccc22c	chr2:232325104-232325310(-)$1	206	178	204	12.7864
===========mmmm===========	chr1:67885591-67885797(-)$1	206	122	148	12.6785
""eeeeeddddmmmmdddd22eeeee	chr8:128752895-128753145(+)$1	250	209	235	10.2305
fffff!!ddddmmmmddddffffff]	chr2:153532975-153533232(-)$1	257	162	188	10.5777
===========mmmm===========	chr1:12052573-12052819(+)$1	246	199	225	12.6785
d[bb"""ddddmmmmddddbb]dddd	chrX:106331805-106332078(-)$1	273	219	245	10.0163
eeeee[cccbbmmmmbb4444ccc]e	chr5:176885531-176885784(-)$1	253	152	178	11.7205
""ccc[eeeeemmmmeeeeeccc333	chr2:192700653-192700933(-)$1	280	181	207	10.5992
ee[ccceeeeemmmmeeeee]ccc]e	chr19:13263910-13264189(+)$1	279	245	271	10.1340
ccc[bb[ddddmmmmdddd]bb]ccc	chr7:2405851-2406092(+)$1	241	107	133	10.7292
b"""ccc!!bbmmmmbb22ccc]bb2	chr3:184039693-184039959(+)$1	266	170	196	10.8227
eee[a[ccc[ammmmaccc]a]eeee	chr3:167747709-167747922(-)$1	213	177	203	11.0007
===========mmmm===========	chr11:812718-812936(+)$1	218	24	50	12.6785
cc[ccc[ddddmmmmdddd333ccc]	chr3:170584037-170584383(-)$1	346	2	28	12.6055
bbcccbb[cccmmmmccc]bb]ccc]	chr6:90366369-90366604(-)$1	235	196	222	10.7810
fffff####ccclllccc333fffff	chr18:19203628-19203881(+)$1	253	80	106	9.5512
iiiiiii[ddddllldddd333iiii	chr12:54635443-54635709(-)$1	266	68	94	9.9326
!!ccc"""cccmmmmccc333ccc22	chr5:74016366-74016675(+)$1	309	99	125	13.8257
a[ccc[eeeeemmmmeeeee]ccc]a	chr2:86302087-86302443(-)$1	356	290	316	10.5223
gaa[gggggggmmmmggggggg]a]a	chr19:3055563-3055825(-)$1	262	145	171	10.8183
ccc!!a[ddddmmmmdddd]a22ccc	chr18:13666412-13666797(-)$1	385	147	173	11.3189
eggggggg!!ammmma22ggggggg]	chr17:59984678-59985022(-)$1	344	202	228	10.5309
======[ddddmmmmdddd333====	chr2:153512715-153513011(-)$1	296	193	219	13.1609
=======!!bbmmmmbb22=======	chr1:201932649-201932938(+)$1	289	69	95	12.7551
###ccc[ddddmmmmdddd22ccc55	chr17:30678709-30678982(+)$1	273	168	194	10.3221

#otherMatches

#Seq PSSM
CUUCAGACCUAAGCCUGGGCUCCACA	chr10:99123510-99123763(-)$1	253	184	210	10.5833
GGGGACCUCCAUCAUUGGAAGGCAAC	chr15:43483073-43483341(+)$1	268	171	197	11.7559
GAAAACAGCAUGUGGAUUCUGUUUUG	chr3:196666024-196666316(-)$1	292	165	191	11.1316
UAUCCGCUCCUCAAGAGGAGCGGAUU	chr1:171509156-171509377(+)$1	221	165	191	10.4103
CCCGGGCCAGGGCUGCCUCCCGGGUA	chr17:79804204-79804433(-)$1	229	142	168	10.7783
AACUGCACAGGUGAACUUAUGUGGCU	chr22:30974740-30975053(-)$1	313	277	303	10.3511
UUUUAUUCAGAUUAUUCAGGAGGAAA	chr8:30510848-30511133(-)$1	285	213	239	11.1102
UCUCGGAGGGGAAUUGUCCGGAGAGA	chr2:70314935-70315157(+)$1	222	85	111	8.5482
UGCGUGGAGGGAGGUUCCUGACUCGC	chr11:65733257-65733488(+)$1	231	59	85	10.3005
CAAGAAGGCAUGGAGAUGAAGCUGCA	chr5:162898268-162898537(+)$1	269	115	141	13.4642
UGGAAGGCCGAGAGAUCAUUUCUAAU	chr2:198267604-198267851(-)$1	247	144	170	10.3805
GCAAGGUAAGGUGUUCCCAGCUCUGC	chr5:177634079-177634299(+)$1	220	142	168	11.0436
UCCUACAGGGUAGAUAUCCAUAGAAA	chr3:185404755-185405048(-)$1	293	61	87	11.9878
CUUUUACUUUGUAGACAAUGUAAUUG	chr2:44201188-44201420(-)$1	232	144	170	10.7525
UACAGGGUGUGACAACAUGACCUGCA	chr2:27604538-27604772(-)$1	234	141	167	11.5382
CCGCAAACAUCUGAUGAUGAAAAGAA	chr14:78183742-78184005(+)$1	263	126	152	11.3401
GUGGCAGUGAAAAUGUUGAAUGUGAC	chr7:140477730-140477976(-)$1	246	106	132	11.6694
CCAGGGCAAGCCCCGGCUGAGCCUCA	chr17:78360469-78360730(+)$1	261	194	220	11.1584
UAUGCAUUCUAAAUAUGGUUAGUAUA	chr1:40205732-40206044(+)$1	312	283	309	12.3643
CAGGGAGCAUCAAGAGAGACACCUUG	chr1:186304486-186304733(-)$1	247	203	229	11.8523
GUCAAUGAUGCCCAGGUAAGCCUUGU	chr19:59059156-59059373(+)$1	217	102	128	13.2785
UCUCCUCUGUUCCACAGCAGAGGAGA	chr11:812661-812874(+)$1	213	81	107	12.6785
GAACUUUACUAACACUAGGAAAAGCA	chr17:2234139-2234400(-)$1	261	93	119	11.0275
UCUGUUUUUAUCUCCAUAGGAAGGGA	chr3:41274934-41275238(+)$1	304	66	92	10.2945
GAUCGAGGAGGAGCGCCAGGACCUGA	chr1:155931552-155931804(-)$1	252	105	131	10.7573
GCUCCUCAAUGACCGCAAAGUGUGAG	chr1:40036764-40037029(-)$1	265	103	129	11.2275
AGUUGCAGUUGUUUUCAUAGGGCAGC	chr9:95050014-95050290(-)$1	276	43	69	11.1833
AGGUAUUUUAAACAAUUGUAGUGCUU	chr1:85121413-85121622(-)$1	209	106	132	13.3559
AGGCUAUAACAAAGCUGUUUAUAUCA	chrX:75397471-75397812(+)$1	341	25	51	13.2462
GUCCUACAUUCAUUGGAACUGAGGUG	chr12:25031359-25031608(-)$1	249	122	148	10.5344
CAGAGCAGGGAGCAGUCCCUCGAUGC	chr12:133372636-133372904(-)$1	268	197	223	11.9351
CAGGAACUAGAAUCUUCUACCUCUCC	chr1:180047594-180047846(+)$1	252	179	205	10.9848
AAAGGGACUUAAUACUGAAACCUGAU	chr2:232325104-232325310(-)$1	206	178	204	12.7864
UCGUGUUUGAAAAUGUUCAGAUGUGA	chr1:67885591-67885797(-)$1	206	122	148	12.6785
AGCAGAGGAGCAAAAGCUCAUUUCUG	chr8:128752895-128753145(+)$1	250	209	235	10.2305
AUUGUUGCUACUGUUGUAGAUAAUGA	chr2:153532975-153533232(-)$1	257	162	188	10.5777
UCUUUCUUCCUGGCUAGGAGGGAGGG	chr1:12052573-12052819(+)$1	246	199	225	12.6785
AGGGUAAAGGCCCCAGUCUCCAUGUG	chrX:106331805-106332078(-)$1	273	219	245	10.0163
GGAGGAGCCCCCUCAGGCACAGGCGC	chr5:176885531-176885784(-)$1	253	152	178	11.7205
AGGUACGCUAUGAGGGUAGCUACGCG	chr2:192700653-192700933(-)$1	280	181	207	10.5992
GGAGGCCCUCGAGCCCGAGGUGUCGU	chr19:13263910-13264189(+)$1	279	245	271	10.1340
GUGACCUUUAGCCCCCUGAUGGACAC	chr7:2405851-2406092(+)$1	241	107	133	10.7292
AAUUUGGAGGCAGCAGCAGCCACUCA	chr3:184039693-184039959(+)$1	266	170	196	10.8227
AGCAGGUGGAGGAGGCCcagcagcug	chr3:167747709-167747922(-)$1	213	177	203	11.0007
UCUCCUCUGUUCCACAGCAGAGGAGA	chr11:812718-812936(+)$1	218	24	50	12.6785
UCGUAUAGUAAACCUUUACAUAGUAG	chr3:170584037-170584383(-)$1	346	2	28	12.6055
CUCCUCAGCUAAACUUAGGUGAAGGC	chr6:90366369-90366604(-)$1	235	196	222	10.7810
GUGUGGAUGUCAGCAUGAAUACACAU	chr18:19203628-19203881(+)$1	253	80	106	9.5512
GAAAUGUCCACAAAUUGUGAUAGCAU	chr12:54635443-54635709(-)$1	266	68	94	9.9326
AGGCCUCGGGCAAGUGCUGUUGGUGA	chr5:74016366-74016675(+)$1	309	99	125	13.8257
UGUGAGUAAGGGCAGCUUUGGUCAGG	chr2:86302087-86302443(-)$1	356	290	316	10.5223
GCCCUACCUCUCCCAAGAGGUAAGAG	chr19:3055563-3055825(-)$1	262	145	171	10.8183
GCGCAGUCAUGGCUACAUGUCCACGC	chr18:13666412-13666797(-)$1	385	147	173	11.3189
CCAGUGCACUCUUACGUCUGUACUGU	chr17:59984678-59985022(-)$1	344	202	228	10.5309
UUAUACCAAAUAUAUGUUUACAGUAU	chr2:153512715-153513011(-)$1	296	193	219	13.1609
CUUGUUUCUUUUUACAAUAAAAUAGG	chr1:201932649-201932938(+)$1	289	69	95	12.7551
AUAUGUCACAAGAAAUUGUAUACAGG	chr17:30678709-30678982(+)$1	273	168	194	10.3221

#DB
((...((((((....)))).))...)	chr10:99123510-99123763(-)$1	1	184	210	10.5833
((((.((((((....))).)))...)	chr15:43483073-43483341(+)$1	1	171	197	11.7559
.(((((((.((....)).))))))).	chr3:196666024-196666316(-)$1	1	165	191	11.1316
.((((((((((....)))))))))))	chr1:171509156-171509377(+)$1	1	165	191	10.4103
((((((..(((....)))))))))..	chr17:79804204-79804433(-)$1	1	142	168	10.7783
(((((((.(((....))).))))).)	chr22:30974740-30975053(-)$1	1	277	303	10.3511
(((..(((.((....)).))).))))	chr8:30510848-30511133(-)$1	1	213	239	11.1102
((((...(((......)))...))))	chr2:70314935-70315157(+)$1	1	85	111	8.5482
((.((..((((....)))).)).)))	chr11:65733257-65733488(+)$1	1	59	85	10.3005
((.(....(((....)))...)))).	chr5:162898268-162898537(+)$1	1	115	141	13.4642
((((((...((....)).)))))).)	chr2:198267604-198267851(-)$1	1	144	170	10.3805
(((.(((..((....))..))).)))	chr5:177634079-177634299(+)$1	1	142	168	11.0436
(.(((..((((....)))).)))..)	chr3:185404755-185405048(-)$1	1	61	87	11.9878
...((((.(((....))).)))).))	chr2:44201188-44201420(-)$1	1	144	170	10.7525
(.((((..(((....)))..)))).)	chr2:27604538-27604772(-)$1	1	141	167	11.5382
.(.....((((....))))....).)	chr14:78183742-78184005(+)$1	1	126	152	11.3401
((.(((.(.((....)).).))).))	chr7:140477730-140477976(-)$1	1	106	132	11.6694
...((((.(((....)))..))))..	chr17:78360469-78360730(+)$1	1	194	220	11.1584
(((((...(((....)))...)))))	chr1:40205732-40206044(+)$1	1	283	309	12.3643
(((((.(..((....))..).)))))	chr1:186304486-186304733(-)$1	1	203	229	11.8523
(((((...(((....)))....))).	chr19:59059156-59059373(+)$1	1	102	128	13.2785
(((((((((((....)))))))))))	chr11:812661-812874(+)$1	1	81	107	12.6785
((.((((.(((....)))..))))..	chr17:2234139-2234400(-)$1	1	93	119	11.0275
(((.(((((((....))))))).)))	chr3:41274934-41275238(+)$1	1	66	92	10.2945
(.((.(((.((....))....)))))	chr1:155931552-155931804(-)$1	1	105	131	10.7573
(((((.(..((....))..).).)))	chr1:40036764-40037029(-)$1	1	103	129	11.2275
.(((((...((....))....)))))	chr9:95050014-95050290(-)$1	1	43	69	11.1833
(((((((.(((....))).)))))))	chr1:85121413-85121622(-)$1	1	106	132	13.3559
(.(((((((((....)))...))).)	chrX:75397471-75397812(+)$1	1	25	51	13.2462
(((((.(((((....))).))))).)	chr12:25031359-25031608(-)$1	1	122	148	10.5344
(((.(((((((....))))....)))	chr12:133372636-133372904(-)$1	1	197	223	11.9351
(((((..((((....))))....)))	chr1:180047594-180047846(+)$1	1	179	205	10.9848
(..(((..(((....)))..)))..)	chr2:232325104-232325310(-)$1	1	178	204	12.7864
(((((((((((....)))))))))))	chr1:67885591-67885797(-)$1	1	122	148	12.6785
..(((((((((....))))..)))))	chr8:128752895-128753145(+)$1	1	209	235	10.2305
(((((..((((....)))))))))).	chr2:153532975-153533232(-)$1	1	162	188	10.5777
(((((((((((....)))))))))))	chr1:12052573-12052819(+)$1	1	199	225	12.6785
(.((...((((....)))))).))))	chrX:106331805-106332078(-)$1	1	219	245	10.0163
(((((.(((((....))....))).)	chr5:176885531-176885784(-)$1	1	152	178	11.7205
..(((.(((((....))))))))...	chr2:192700653-192700933(-)$1	1	181	207	10.5992
((.((((((((....))))).))).)	chr19:13263910-13264189(+)$1	1	245	271	10.1340
(((.((.((((....)))).)).)))	chr7:2405851-2406092(+)$1	1	107	133	10.7292
(...(((..((....))..))).)).	chr3:184039693-184039959(+)$1	1	170	196	10.8227
(((.(.(((.(....)))).).))))	chr3:167747709-167747922(-)$1	1	177	203	11.0007
(((((((((((....)))))))))))	chr11:812718-812936(+)$1	1	24	50	12.6785
((.(((.((((....))))...))).	chr3:170584037-170584383(-)$1	1	2	28	12.6055
(((((((.(((....))).)).))).	chr6:90366369-90366604(-)$1	1	196	222	10.7810
(((((....(((...)))...)))))	chr18:19203628-19203881(+)$1	1	80	106	9.5512
(((((((.((((...))))...))))	chr12:54635443-54635709(-)$1	1	68	94	9.9326
..(((...(((....)))...)))..	chr5:74016366-74016675(+)$1	1	99	125	13.8257
(.(((.(((((....))))).))).)	chr2:86302087-86302443(-)$1	1	290	316	10.5223
(((.(((((((....))))))).).)	chr19:3055563-3055825(-)$1	1	145	171	10.8183
(((..(.((((....)))).)..)))	chr18:13666412-13666797(-)$1	1	147	173	11.3189
((((((((..(....)..))))))).	chr17:59984678-59985022(-)$1	1	202	228	10.5309
((((((.((((....))))...))))	chr2:153512715-153513011(-)$1	1	193	219	13.1609
(((((((..((....))..)))))))	chr1:201932649-201932938(+)$1	1	69	95	12.7551
...(((.((((....))))..)))..	chr17:30678709-30678982(+)$1	1	168	194	10.3221

#PSSM
f : 0.15	c : 0.14	e : 0.12	= : 0.12	g : 0.08	" : 0.08	b : 0.08	d : 0.07	[ : 0.03	: : 0.01	i : 0.01	! : 0.01	a : 0.01	# : 0.01	
f : 0.14	= : 0.14	e : 0.12	c : 0.10	[ : 0.10	g : 0.08	" : 0.08	d : 0.07	a : 0.03	b : 0.03	! : 0.03	i : 0.01	# : 0.01	
c : 0.17	= : 0.14	f : 0.12	e : 0.12	[ : 0.10	g : 0.08	" : 0.07	d : 0.05	b : 0.03	$ : 0.01	! : 0.01	i : 0.01	a : 0.01	# : 0.01	
c : 0.22	= : 0.14	f : 0.10	d : 0.10	[ : 0.10	e : 0.08	g : 0.05	b : 0.05	" : 0.03	! : 0.03	a : 0.01	$ : 0.01	i : 0.01	
c : 0.28	= : 0.14	g : 0.08	e : 0.08	d : 0.08	f : 0.07	" : 0.05	[ : 0.03	! : 0.03	b : 0.03	a : 0.03	# : 0.01	$ : 0.01	i : 0.01	
c : 0.21	= : 0.14	[ : 0.12	" : 0.08	g : 0.07	! : 0.07	d : 0.07	b : 0.05	e : 0.05	f : 0.03	# : 0.03	$ : 0.01	i : 0.01	a : 0.01	
c : 0.15	= : 0.12	! : 0.12	" : 0.12	[ : 0.10	e : 0.08	g : 0.07	b : 0.05	d : 0.05	# : 0.03	a : 0.03	$ : 0.01	i : 0.01	
d : 0.24	! : 0.14	c : 0.12	[ : 0.12	= : 0.08	" : 0.08	g : 0.07	e : 0.05	# : 0.03	a : 0.01	b : 0.01	
c : 0.33	d : 0.26	! : 0.10	= : 0.08	[ : 0.07	e : 0.05	" : 0.03	g : 0.03	# : 0.01	
c : 0.31	d : 0.26	b : 0.21	= : 0.08	e : 0.05	g : 0.03	[ : 0.01	! : 0.01	
c : 0.29	d : 0.26	b : 0.21	= : 0.08	e : 0.05	g : 0.03	a : 0.03	o : 0.01	
m : 0.94	o : 0.01	c : 0.01	d : 0.01	
m : 0.94	l : 0.03	o : 0.01	
m : 0.94	l : 0.03	o : 0.01	
m : 0.94	l : 0.03	o : 0.01	
c : 0.29	d : 0.26	b : 0.21	= : 0.08	e : 0.05	g : 0.03	a : 0.03	o : 0.01	
c : 0.33	d : 0.26	b : 0.21	= : 0.08	e : 0.05	g : 0.03	2 : 0.01	
c : 0.33	d : 0.26	2 : 0.10	= : 0.08	] : 0.07	4 : 0.05	e : 0.05	g : 0.03	
d : 0.26	2 : 0.15	] : 0.10	= : 0.08	3 : 0.08	g : 0.07	4 : 0.07	c : 0.05	e : 0.05	f : 0.03	a : 0.01	
3 : 0.15	] : 0.12	= : 0.12	4 : 0.12	2 : 0.10	c : 0.07	g : 0.07	e : 0.07	f : 0.05	b : 0.05	a : 0.03	d : 0.01	
3 : 0.15	c : 0.14	= : 0.12	4 : 0.12	b : 0.10	g : 0.07	d : 0.07	] : 0.07	f : 0.05	2 : 0.03	a : 0.03	e : 0.01	
c : 0.26	= : 0.12	g : 0.08	f : 0.07	e : 0.07	] : 0.07	3 : 0.07	d : 0.07	4 : 0.07	b : 0.05	a : 0.03	2 : 0.01	
c : 0.28	= : 0.14	] : 0.12	d : 0.10	e : 0.08	g : 0.07	f : 0.07	4 : 0.05	3 : 0.03	i : 0.01	2 : 0.01	
c : 0.26	= : 0.14	d : 0.12	f : 0.10	e : 0.10	g : 0.07	3 : 0.05	2 : 0.03	] : 0.03	a : 0.03	b : 0.01	i : 0.01	
] : 0.17	c : 0.15	= : 0.14	2 : 0.10	e : 0.08	g : 0.07	d : 0.07	f : 0.07	3 : 0.05	b : 0.03	i : 0.01	5 : 0.01	
e : 0.14	c : 0.14	] : 0.12	= : 0.12	f : 0.08	2 : 0.08	d : 0.08	g : 0.07	b : 0.03	a : 0.03	C : 0.01	3 : 0.01	i : 0.01	5 : 0.01	

#score	645.8043008133998
#seq	57
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF257KKQ_DDX52_CDS_m2_run2.txt

#BEAR
ccddddtttttttttttdddd]ccccc	chr4:155507193-155507437(-)$1	244	137	164	25.1913
ffffvvvvvvvvvvvvvffffff4444	chr14:50235029-50235305(+)$1	276	23	50	27.4521
ggggggtttttttttttggggggg>>>	chr17:41150663-41150890(+)$1	227	89	116	26.1217
eeeevvvvvvvvvvvvveeeee:dddd	chr16:74506148-74506403(-)$1	255	183	210	25.7142

#otherMatches

#Seq PSSM
GUACCACACAGAAAAACUGGUCACUUC	chr4:155507193-155507437(-)$1	244	137	164	25.1913
GAGGCCUCAACGCCGUCCCUUUCGCCA	chr14:50235029-50235305(+)$1	276	23	50	27.4521
UUGCUCUCUGCAGAAAUGGGCAAGUUC	chr17:41150663-41150890(+)$1	227	89	116	26.1217
UUAAAAACAGAAACAAAUUGACAGGGA	chr16:74506148-74506403(-)$1	255	183	210	25.7142

#DB
((((((...........)))).)))))	chr4:155507193-155507437(-)$1	1	137	164	25.1913
((((.............))))))....	chr14:50235029-50235305(+)$1	1	23	50	27.4521
((((((...........)))))))...	chr17:41150663-41150890(+)$1	1	89	116	26.1217
((((.............))))).((((	chr16:74506148-74506403(-)$1	1	183	210	25.7142

#PSSM
c : 0.25	f : 0.25	g : 0.25	e : 0.25	
c : 0.25	f : 0.25	g : 0.25	e : 0.25	
d : 0.25	f : 0.25	g : 0.25	e : 0.25	
d : 0.25	f : 0.25	g : 0.25	e : 0.25	
v : 0.50	d : 0.25	g : 0.25	
v : 0.50	d : 0.25	g : 0.25	
t : 0.50	v : 0.50	
t : 0.50	v : 0.50	
t : 0.50	v : 0.50	
t : 0.50	v : 0.50	
t : 0.50	v : 0.50	
t : 0.50	v : 0.50	
t : 0.50	v : 0.50	
t : 0.50	v : 0.50	
t : 0.50	v : 0.50	
t : 0.50	v : 0.50	
t : 0.50	v : 0.50	
d : 0.25	f : 0.25	g : 0.25	e : 0.25	
d : 0.25	f : 0.25	g : 0.25	e : 0.25	
d : 0.25	f : 0.25	g : 0.25	e : 0.25	
d : 0.25	f : 0.25	g : 0.25	e : 0.25	
] : 0.25	f : 0.25	g : 0.25	e : 0.25	
c : 0.25	f : 0.25	g : 0.25	: : 0.25	
c : 0.25	4 : 0.25	g : 0.25	d : 0.25	
c : 0.25	4 : 0.25	> : 0.25	d : 0.25	
c : 0.25	4 : 0.25	> : 0.25	d : 0.25	
c : 0.25	4 : 0.25	> : 0.25	d : 0.25	

#score	104.47952763939999
#seq	4
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF963CVD_G3BP1_transcript_m2_run2.txt

#BEAR
iiiiiwwwwwwwwwwwwwwiiiiiiii	chr2:27309984-27310252(+)$1	268	73	100	23.0025
=======uuuuuuuuuuuu========	chr14:24613507-24613730(-)$1	223	82	109	25.3019
b[eeeeeuuuuuuuuuuuueeeee]bb	chr15:89173250-89173505(+)$1	255	110	137	23.9939
a[cccwwwwwwwwwwwwwwccc]a]hh	chr6:32086757-32087019(-)$1	262	162	189	22.5063
gggggggyyyyyyyyyyyyyyyygggg	chr2:63832358-63832625(+)$1	267	207	234	21.7940
!!eeeeevvvvvvvvvvvvveeeee22	chr5:132424648-132424876(+)$1	228	144	171	24.6105
cc[ddddvvvvvvvvvvvvvdddd]cc	chr6:26156719-26156931(+)$1	212	112	139	24.6898
ggggggguuuuuuuuuuuugggggggc	chr17:57721576-57721919(+)$1	343	93	120	25.0826
cc[ddddtttttttttttddddccc:D	chr12:109094827-109095124(-)$1	297	249	276	21.1052
%%eeeeeuuuuuuuuuuuueeeee666	chr7:73609398-73609617(+)$1	219	162	189	22.0029
[dddd[attttttttttta]dddd]ee	chr15:90992690-90992911(+)$1	221	176	203	23.3526
gggg[bbuuuuuuuuuuuubbgggggg	chr6:34839563-34839803(+)$1	240	80	107	24.1183
!bb!!ccctttttttttttccc22bb2	chr9:35060755-35061020(-)$1	265	115	142	22.3249
=======wwwwwwwwwwwwww======	chr17:7481047-7481275(+)$1	228	120	147	24.0171
###dddduuuuuuuuuuuudddd4444	chr6:34737969-34738203(+)$1	234	23	50	24.4786
ggggggguuuuuuuuuuuuggggggg:	chr7:56123903-56124144(+)$1	241	114	141	24.2007
gggggggyyyyyyyyyyyyyyyygggg	chr1:36754562-36754809(+)$1	247	83	110	21.7940
hhhhhhhwwwwwwwwwwwwwwhhhhhh	chr3:52597207-52597569(-)$1	362	37	64	21.8136
!!addddvvvvvvvvvvvvvdddd444	chr11:57077577-57077832(-)$1	255	33	60	24.7123
[ffffffvvvvvvvvvvvvvffffff2	chr20:40045779-40046079(-)$1	300	204	231	23.3794
dd[ddddtttttttttttdddd333dd	chr9:131371300-131371528(+)$1	228	143	170	22.8251
b!!ddddtttttttttttdddd22bb]	chr6:43017902-43018160(-)$1	258	76	103	22.4055
hhhhhhhuuuuuuuuuuuuhhhhhhhh	chr5:138264837-138265068(+)$1	231	19	46	22.5899
=======wwwwwwwwwwwwww======	chr3:81698013-81698242(-)$1	229	8	35	24.0171
dd[dddduuuuuuuuuuuudddddddd	chr16:22360507-22360785(-)$1	278	35	62	23.8059
fffff[auuuuuuuuuuuua]ffffff	chr2:209113103-209113354(-)$1	251	77	104	23.4038
"""ddddvvvvvvvvvvvvvdddd333	chr17:35547982-35548299(-)$1	317	188	215	24.9162
ccc[cccuuuuuuuuuuuucccccc]d	chr11:122931271-122931549(-)$1	278	207	234	24.6130
[ffffffwwwwwwwwwwwwwwffffff	chr17:57760783-57760996(+)$1	213	11	38	22.2087
ffffffvvvvvvvvvvvvvffffffff	chr1:113236607-113236893(+)$1	286	94	121	22.3419
g[eeeeeuuuuuuuuuuuueeeee]gg	chr17:1559870-1560137(-)$1	267	41	68	24.8257
[eeeeevvvvvvvvvvvvveeeee]ag	chr12:111180356-111180627(-)$1	271	40	67	24.0982
bb[dddduuuuuuuuuuuudddd]bb]	chr17:49232910-49233191(+)$1	281	48	75	23.7344
###ddddyyyyyyyyyyyyyyyydddd	chr4:39510101-39510330(-)$1	229	23	50	20.8890
gggggggvvvvvvvvvvvvvggggggg	chr6:30690598-30690835(+)$1	237	95	122	25.1273
gggggggwwwwwwwwwwwwwwgggggg	chr2:122122577-122122843(-)$1	266	118	145	23.9239
eeee!!avvvvvvvvvvvvva22eeee	chr20:47858381-47858624(+)$1	243	51	78	23.7726
gggggggtttttttttttggggggg::	chr17:66039852-66040091(+)$1	239	54	81	21.5980
========ttttttttttt========	chr17:47119502-47119840(+)$1	338	301	328	23.6979
::eeeeewwwwwwwwwwwwwweeeeeD	chr16:75674066-75674340(-)$1	274	186	213	20.1026
hhhhhhhuuuuuuuuuuuuhhhhhhhh	chr4:122590748-122590969(-)$1	221	67	94	22.5899
eeeee[attttttttttta]eeeee::	chr13:52548734-52549017(-)$1	283	205	232	21.5158
gggggggvvvvvvvvvvvvvggggggg	chr6:7583231-7583563(+)$1	332	278	305	25.1273
[bb[cccuuuuuuuuuuuucccbb]ee	chr6:30557365-30557581(+)$1	216	175	202	23.7825
"gggggggtttttttttttggggggge	chr21:35284528-35284803(-)$1	275	147	174	23.4470
++eeeeeuuuuuuuuuuuueeeee>>>	chr7:94294595-94294861(+)$1	266	55	82	22.6192
[gggggggtttttttttttgggggggf	chr1:220310071-220310307(+)$1	236	194	221	23.4375
dffffffuuuuuuuuuuuuffffff]d	chrX:108921217-108921440(-)$1	223	73	100	23.0403
c!!ddddtttttttttttdddd22ccc	chr12:103234122-103234394(-)$1	272	47	74	23.0496
ddddddvvvvvvvvvvvvvdddd333d	chr2:96964598-96964802(-)$1	204	53	80	23.5075
e!!a[ccctttttttttttccc]a22e	chr9:19116104-19116366(-)$1	262	52	79	23.2690
!!eeeeevvvvvvvvvvvvveeeee33	chr1:245025858-245026111(-)$1	253	130	157	24.9810
"ccc[ccctttttttttttccc]ccc5	chr3:41277114-41277335(+)$1	221	185	212	22.8296
hhh[cccuuuuuuuuuuuuccc]hhhh	chr3:184049635-184049893(+)$1	258	188	215	24.0155
ee[dddduuuuuuuuuuuuddddeeee	chr2:207018241-207018460(-)$1	219	156	183	24.1803
!!eeeeewwwwwwwwwwwwwweeeee2	chr20:17639369-17639637(-)$1	268	180	207	23.4869
dddd[bbuuuuuuuuuuuubb]dddd3	chr14:31619187-31619474(-)$1	287	17	44	22.6837
$$$$cccuuuuuuuuuuuuccc333dd	chr10:51582708-51582966(+)$1	258	158	185	23.9117
hhhhhhhvvvvvvvvvvvvvhhhhhhh	chr2:96968807-96969042(-)$1	235	161	188	22.8336
eeeecccwwwwwwwwwwwwwwccc]ee	chr11:61094217-61094466(-)$1	249	105	132	23.1412
cc[dddduuuuuuuuuuuudddd]ccc	chr20:17600907-17601115(-)$1	208	117	144	24.6137

#otherMatches

#Seq PSSM
CCUGGAUAAGAGGCAGAGGCCGGGAGG	chr2:27309984-27310252(+)$1	268	73	100	23.0025
CAAGAUUGAAGAUGGAAAUGAUUUUGG	chr14:24613507-24613730(-)$1	223	82	109	25.3019
CAGUGGGAACAGCAGGAGGCCCGCAGC	chr15:89173250-89173505(+)$1	255	110	137	23.9939
GGAGAAAGAAGAAAGAGUAUCUGCAGG	chr6:32086757-32087019(-)$1	262	162	189	22.5063
UUUUUGUUGCCUGAUGAUAUAAUAuaa	chr2:63832358-63832625(+)$1	267	207	234	21.7940
CUGAUGUAGUACCAUAUCCAAUAUCUC	chr5:132424648-132424876(+)$1	228	144	171	24.6105
GACGUGGAGAAGAACAACAGCCGCAUC	chr6:26156719-26156931(+)$1	212	112	139	24.6898
GGCUUCAGUACCCUGACUAUGGAGUCU	chr17:57721576-57721919(+)$1	343	93	120	25.0826
GGUAGACACCCUCUGAUAGUCUCCAUA	chr12:109094827-109095124(-)$1	297	249	276	21.1052
CAAGUAGCCAAUCCCAACUCUGCUAUC	chr7:73609398-73609617(+)$1	219	162	189	22.0029
AUCAGAGAAGUAAGAGUCCAUUGAAAU	chr15:90992690-90992911(+)$1	221	176	203	23.3526
GACAGCCCCCAAAAGAACAGGUGUUUU	chr6:34839563-34839803(+)$1	240	80	107	24.1183
AGUAACCCAUCAGCACUGCGGGAAACC	chr9:35060755-35061020(-)$1	265	115	142	22.3249
ACGAGACGUGAUUAUGAGGGAGUUUCG	chr17:7481047-7481275(+)$1	228	120	147	24.0171
ccgucucaaaaaaaaagaagagaaaaU	chr6:34737969-34738203(+)$1	234	23	50	24.4786
CAUUUUGGCCAUUAAAAAGCAAGAUGA	chr7:56123903-56124144(+)$1	241	114	141	24.2007
UGUUUUUAUAAAUAGGUAUCUAGAAGA	chr1:36754562-36754809(+)$1	247	83	110	21.7940
GUUUUUUAUGUCACUUUUUUCAGAAAA	chr3:52597207-52597569(-)$1	362	37	64	21.8136
AUCGGCCAGGAGGAGAUGGAGGCCAGC	chr11:57077577-57077832(-)$1	255	33	60	24.7123
AGGAGAAAACUCUCUAUUCCUUCUCUG	chr20:40045779-40046079(-)$1	300	204	231	23.3794
CUAGGAGAAUCUCAAACCCUCCAACAG	chr9:131371300-131371528(+)$1	228	143	170	22.8251
AGAUCUUGGGCUUUGAGGAAGACAUUG	chr6:43017902-43018160(-)$1	258	76	103	22.4055
CUGGCCAAGAGGCUCAGGGUGGCUGGG	chr5:138264837-138265068(+)$1	231	19	46	22.5899
GUAUAUUCACCACUUUUUAAAAAUAUA	chr3:81698013-81698242(-)$1	229	8	35	24.0171
UUGAAUGCCUGCAAACCAACAUUGAUC	chr16:22360507-22360785(-)$1	278	35	62	23.8059
CUCCUGAUGAGAAGAGGGUUGAGGAGU	chr2:209113103-209113354(-)$1	251	77	104	23.4038
AACCACAUCUUCCUCAACUUUGUGCCC	chr17:35547982-35548299(-)$1	317	188	215	24.9162
CUGACAAAGAUGAAGGAAAUUGCAGAA	chr11:122931271-122931549(-)$1	278	207	234	24.6130
UUUGUAUGACAAGUAUGAAGAAUAUGA	chr17:57760783-57760996(+)$1	213	11	38	22.2087
GUCCUCGGAGACACACCAGGAGGACCC	chr1:113236607-113236893(+)$1	286	94	121	22.3419
GUAGAGACUAAAUUUCCAUUUUCUUCU	chr17:1559870-1560137(-)$1	267	41	68	24.8257
GUGGGAAAGGAGGUGUGAGUcccgggc	chr12:111180356-111180627(-)$1	271	40	67	24.0982
GCUGUAGGCAAGUGAUUCACUGCUGUU	chr17:49232910-49233191(+)$1	281	48	75	23.7344
AUAUUGUUCAUUUUUUUCUUUCUGCAG	chr4:39510101-39510330(-)$1	229	23	50	20.8890
GGUGGCAAAUAUGUUCCUCGUGCCAUC	chr6:30690598-30690835(+)$1	237	95	122	25.1273
AGGAGCACUUCAAGACCAUUCUGCUCC	chr2:122122577-122122843(-)$1	266	118	145	23.9239
CCAAAGCUCUGCAGGAAUUUGACUUGG	chr20:47858381-47858624(+)$1	243	51	78	23.7726
GUGCUGGGGAAAAAAUAACCAGCAUCA	chr17:66039852-66040091(+)$1	239	54	81	21.5980
UGCAGGGUGAUGGACAUGUGCCCUGUG	chr17:47119502-47119840(+)$1	338	301	328	23.6979
ACUGACUUCAUCCAAAAAUAUAGUCAC	chr16:75674066-75674340(-)$1	274	186	213	20.1026
UCUCUUUUUUUUUUUUUUUAAAGGGAG	chr4:122590748-122590969(-)$1	221	67	94	22.5899
GAGGCCGUCAUCACUUAUCAGCCUUAU	chr13:52548734-52549017(-)$1	283	205	232	21.5158
UUCUGAAAUCCAGCCAUUCCUUCGGGG	chr6:7583231-7583563(+)$1	332	278	305	25.1273
AAGUGUGACUUUAACCGACCACCUCCC	chr6:30557365-30557581(+)$1	216	175	202	23.7825
UUAUUCUGCUGCAUCAAAACAGAAUAA	chr21:35284528-35284803(-)$1	275	147	174	23.4470
AUGAUUGCCGAGCUCCAAACAAUUUUA	chr7:94294595-94294861(+)$1	266	55	82	22.6192
CUAAAAUGUAUUUUAUUUUCGUUUUAA	chr1:220310071-220310307(+)$1	236	194	221	23.4375
UAAAAUAUUUCUCUUAUUUUGUUUUAG	chrX:108921217-108921440(-)$1	223	73	100	23.0403
GACUACCUUUCUCCAAAUGGUGCCCUU	chr12:103234122-103234394(-)$1	272	47	74	23.0496
GCUGGCAGAGACCUGGUGAGCUAAAUG	chr2:96964598-96964802(-)$1	204	53	80	23.5075
CAGGACCAAGGUGCAGAGAUGGACAAG	chr9:19116104-19116366(-)$1	262	52	79	23.2690
GACCACGAGAAGAUCAUGGCCGUGGAU	chr1:245025858-245026111(-)$1	253	130	157	24.9810
UCAGAGGACUAAAUACCAUUCCAUUGU	chr3:41277114-41277335(+)$1	221	185	212	22.8296
AGGCGCUCUACGCCCUCCAGGCCCUUG	chr3:184049635-184049893(+)$1	258	188	215	24.0155
ACCUUAUUUUUGUAAAUUUAUAAGUCU	chr2:207018241-207018460(-)$1	219	156	183	24.1803
CAGGGGAAAAAAGCAGAAGGGUCCCCC	chr20:17639369-17639637(-)$1	268	180	207	23.4869
AUGUUUAAUUGAAUAAUUCUACACAUU	chr14:31619187-31619474(-)$1	287	17	44	22.6837
UCAAGCUCCUUACAUACCCAGCACCGA	chr10:51582708-51582966(+)$1	258	158	185	23.9117
ugaaauauauauuaggucuuuauuuca	chr2:96968807-96969042(-)$1	235	161	188	22.8336
CUCAGGGGCGGCACGUAAAAACCUAUG	chr11:61094217-61094466(-)$1	249	105	132	23.1412
GCAUCUCGAAGAGAUUGUAGAGAAGCU	chr20:17600907-17601115(-)$1	208	117	144	24.6137

#DB
(((((..............))))))))	chr2:27309984-27310252(+)$1	1	73	100	23.0025
(((((((............))))))))	chr14:24613507-24613730(-)$1	1	82	109	25.3019
(.(((((............))))).))	chr15:89173250-89173505(+)$1	1	110	137	23.9939
(.(((..............))).).))	chr6:32086757-32087019(-)$1	1	162	189	22.5063
(((((((................))))	chr2:63832358-63832625(+)$1	1	207	234	21.7940
..(((((.............)))))..	chr5:132424648-132424876(+)$1	1	144	171	24.6105
((.((((.............)))).))	chr6:26156719-26156931(+)$1	1	112	139	24.6898
(((((((............)))))))(	chr17:57721576-57721919(+)$1	1	93	120	25.0826
((.((((...........))))))).)	chr12:109094827-109095124(-)$1	1	249	276	21.1052
..(((((............)))))...	chr7:73609398-73609617(+)$1	1	162	189	22.0029
.((((.(...........).)))).))	chr15:90992690-90992911(+)$1	1	176	203	23.3526
((((.((............))))))))	chr6:34839563-34839803(+)$1	1	80	107	24.1183
.((..(((...........)))..)).	chr9:35060755-35061020(-)$1	1	115	142	22.3249
(((((((..............))))))	chr17:7481047-7481275(+)$1	1	120	147	24.0171
...((((............))))....	chr6:34737969-34738203(+)$1	1	23	50	24.4786
(((((((............))))))).	chr7:56123903-56124144(+)$1	1	114	141	24.2007
(((((((................))))	chr1:36754562-36754809(+)$1	1	83	110	21.7940
(((((((..............))))))	chr3:52597207-52597569(-)$1	1	37	64	21.8136
..(((((.............))))...	chr11:57077577-57077832(-)$1	1	33	60	24.7123
.((((((.............)))))).	chr20:40045779-40046079(-)$1	1	204	231	23.3794
((.((((...........))))...))	chr9:131371300-131371528(+)$1	1	143	170	22.8251
(..((((...........))))..)).	chr6:43017902-43018160(-)$1	1	76	103	22.4055
(((((((............))))))))	chr5:138264837-138265068(+)$1	1	19	46	22.5899
(((((((..............))))))	chr3:81698013-81698242(-)$1	1	8	35	24.0171
((.((((............))))))))	chr16:22360507-22360785(-)$1	1	35	62	23.8059
(((((.(............).))))))	chr2:209113103-209113354(-)$1	1	77	104	23.4038
...((((.............))))...	chr17:35547982-35548299(-)$1	1	188	215	24.9162
(((.(((............)))))).)	chr11:122931271-122931549(-)$1	1	207	234	24.6130
.((((((..............))))))	chr17:57760783-57760996(+)$1	1	11	38	22.2087
((((((.............))))))((	chr1:113236607-113236893(+)$1	1	94	121	22.3419
(.(((((............))))).))	chr17:1559870-1560137(-)$1	1	41	68	24.8257
.(((((.............))))).))	chr12:111180356-111180627(-)$1	1	40	67	24.0982
((.((((............)))).)).	chr17:49232910-49233191(+)$1	1	48	75	23.7344
...((((................))))	chr4:39510101-39510330(-)$1	1	23	50	20.8890
(((((((.............)))))))	chr6:30690598-30690835(+)$1	1	95	122	25.1273
(((((((..............))))))	chr2:122122577-122122843(-)$1	1	118	145	23.9239
((((..(.............)..))))	chr20:47858381-47858624(+)$1	1	51	78	23.7726
(((((((...........)))))))..	chr17:66039852-66040091(+)$1	1	54	81	21.5980
((((((((...........))))))))	chr17:47119502-47119840(+)$1	1	301	328	23.6979
..(((((..............))))))	chr16:75674066-75674340(-)$1	1	186	213	20.1026
(((((((............))))))))	chr4:122590748-122590969(-)$1	1	67	94	22.5899
(((((.(...........).)))))..	chr13:52548734-52549017(-)$1	1	205	232	21.5158
(((((((.............)))))))	chr6:7583231-7583563(+)$1	1	278	305	25.1273
.((.(((............))))).))	chr6:30557365-30557581(+)$1	1	175	202	23.7825
.(((((((...........))))))))	chr21:35284528-35284803(-)$1	1	147	174	23.4470
..(((((............)))))...	chr7:94294595-94294861(+)$1	1	55	82	22.6192
.(((((((...........))))))))	chr1:220310071-220310307(+)$1	1	194	221	23.4375
(((((((............)))))).)	chrX:108921217-108921440(-)$1	1	73	100	23.0403
(..((((...........))))..)))	chr12:103234122-103234394(-)$1	1	47	74	23.0496
((((((.............))))...)	chr2:96964598-96964802(-)$1	1	53	80	23.5075
(..(.(((...........))).)..)	chr9:19116104-19116366(-)$1	1	52	79	23.2690
..(((((.............)))))..	chr1:245025858-245026111(-)$1	1	130	157	24.9810
.(((.(((...........))).))).	chr3:41277114-41277335(+)$1	1	185	212	22.8296
(((.(((............))).))))	chr3:184049635-184049893(+)$1	1	188	215	24.0155
((.((((............))))))))	chr2:207018241-207018460(-)$1	1	156	183	24.1803
..(((((..............))))).	chr20:17639369-17639637(-)$1	1	180	207	23.4869
((((.((............)).)))).	chr14:31619187-31619474(-)$1	1	17	44	22.6837
....(((............)))...))	chr10:51582708-51582966(+)$1	1	158	185	23.9117
(((((((.............)))))))	chr2:96968807-96969042(-)$1	1	161	188	22.8336
(((((((..............))).))	chr11:61094217-61094466(-)$1	1	105	132	23.1412
((.((((............)))).)))	chr20:17600907-17601115(-)$1	1	117	144	24.6137

#PSSM
g : 0.16	[ : 0.09	! : 0.08	c : 0.08	h : 0.08	d : 0.08	e : 0.08	= : 0.06	b : 0.04	" : 0.04	# : 0.03	f : 0.03	i : 0.01	a : 0.01	% : 0.01	: : 0.01	+ : 0.01	$ : 0.01	
g : 0.18	! : 0.11	c : 0.08	d : 0.08	h : 0.08	f : 0.08	e : 0.08	= : 0.06	[ : 0.04	b : 0.04	# : 0.03	i : 0.01	% : 0.01	" : 0.01	: : 0.01	+ : 0.01	$ : 0.01	
e : 0.19	g : 0.18	[ : 0.11	h : 0.08	f : 0.08	= : 0.06	c : 0.04	d : 0.04	! : 0.04	b : 0.03	# : 0.03	i : 0.01	a : 0.01	" : 0.01	$ : 0.01	
d : 0.26	e : 0.19	g : 0.18	f : 0.08	= : 0.06	h : 0.06	[ : 0.04	c : 0.03	i : 0.01	! : 0.01	a : 0.01	$ : 0.01	
d : 0.24	e : 0.16	g : 0.16	c : 0.09	f : 0.08	= : 0.06	[ : 0.06	h : 0.06	! : 0.03	i : 0.01	
d : 0.22	g : 0.16	e : 0.14	c : 0.13	= : 0.06	h : 0.06	f : 0.06	[ : 0.04	w : 0.03	b : 0.03	! : 0.01	
d : 0.21	g : 0.16	e : 0.13	c : 0.13	= : 0.06	a : 0.06	h : 0.06	f : 0.04	v : 0.04	w : 0.03	b : 0.03	
u : 0.36	v : 0.21	w : 0.16	t : 0.11	y : 0.04	c : 0.04	g : 0.03	= : 0.01	
u : 0.36	v : 0.21	t : 0.21	w : 0.16	y : 0.04	
u : 0.36	v : 0.21	t : 0.21	w : 0.16	y : 0.04	
u : 0.36	v : 0.21	t : 0.21	w : 0.16	y : 0.04	
u : 0.36	v : 0.21	t : 0.21	w : 0.16	y : 0.04	
u : 0.36	v : 0.21	t : 0.21	w : 0.16	y : 0.04	
u : 0.36	v : 0.21	t : 0.21	w : 0.16	y : 0.04	
u : 0.36	v : 0.21	t : 0.21	w : 0.16	y : 0.04	
u : 0.36	v : 0.21	t : 0.21	w : 0.16	y : 0.04	
u : 0.36	v : 0.21	t : 0.21	w : 0.16	y : 0.04	
u : 0.36	v : 0.21	t : 0.21	w : 0.16	y : 0.04	
u : 0.36	v : 0.21	w : 0.16	t : 0.09	d : 0.06	y : 0.04	a : 0.03	g : 0.01	
v : 0.16	d : 0.16	c : 0.13	w : 0.13	e : 0.08	g : 0.08	y : 0.04	= : 0.03	] : 0.03	b : 0.03	h : 0.03	f : 0.03	i : 0.01	a : 0.01	
d : 0.22	e : 0.13	c : 0.13	w : 0.13	g : 0.11	y : 0.04	f : 0.04	h : 0.04	= : 0.03	b : 0.03	i : 0.01	] : 0.01	a : 0.01	
d : 0.22	e : 0.16	c : 0.14	g : 0.14	f : 0.08	= : 0.06	h : 0.06	y : 0.04	i : 0.01	2 : 0.01	] : 0.01	
d : 0.18	e : 0.16	g : 0.14	f : 0.08	= : 0.06	] : 0.06	2 : 0.06	h : 0.06	y : 0.04	c : 0.04	3 : 0.03	i : 0.01	b : 0.01	
e : 0.19	g : 0.18	d : 0.11	h : 0.08	f : 0.08	= : 0.06	c : 0.06	2 : 0.04	3 : 0.04	a : 0.03	] : 0.03	i : 0.01	4 : 0.01	b : 0.01	
g : 0.18	] : 0.13	e : 0.11	c : 0.08	h : 0.08	f : 0.08	= : 0.06	3 : 0.06	b : 0.04	d : 0.04	4 : 0.03	i : 0.01	6 : 0.01	> : 0.01	2 : 0.01	
g : 0.18	e : 0.11	h : 0.09	d : 0.08	= : 0.06	b : 0.06	c : 0.06	f : 0.06	: : 0.04	3 : 0.04	2 : 0.03	4 : 0.03	] : 0.03	i : 0.01	6 : 0.01	a : 0.01	> : 0.01	
g : 0.13	e : 0.11	d : 0.11	h : 0.09	= : 0.06	2 : 0.06	c : 0.06	f : 0.06	: : 0.04	3 : 0.04	D : 0.03	4 : 0.03	] : 0.03	i : 0.01	b : 0.01	6 : 0.01	> : 0.01	5 : 0.01	

#score	1425.24321242622
#seq	61
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_transcript_m2_run1.txt

#BEAR
=======qqqqqqqq=======	chr20:44526380-44526650(+)$1	270	209	231	15.9108
ddd[cccqqqqqqqqccc]ddd	chr16:2313172-2313458(-)$1	286	241	263	15.1915
b"""cccqqqqqqqqccc]bbh	chr20:62599214-62599457(-)$1	243	11	33	15.6203
gggggggqqqqqqqqggggggg	chr5:179259865-179260123(+)$1	258	166	188	15.4875
ggggg[aqqqqqqqqa]ggggg	chr10:94451938-94452222(+)$1	284	15	37	15.6200
eee[cccqqqqqqqqccc]eee	chr19:11168776-11169058(+)$1	282	222	244	15.8403
gggg[bbqqqqqqqqbbggggg	chr20:61591614-61591848(+)$1	234	134	156	14.6827
gggggggqqqqqqqqggggggg	chr11:67048765-67049025(+)$1	260	161	183	15.4875
eeeeeeeqqqqqqqqeeeee]e	chr19:2110807-2111057(-)$1	250	30	52	14.5066
cc!!cccqqqqqqqqccc22cc	chr1:156352362-156352657(+)$1	295	215	237	16.2282
"""ddddqqqqqqqqdddd]ee	chr20:35467693-35468028(-)$1	335	114	136	15.5496
cc[ddddqqqqqqqqddddccc	chr18:33799867-33800131(+)$1	264	133	155	15.1277
ccc[cccqqqqqqqqccc]ccc	chr20:55967553-55967831(+)$1	278	187	209	16.0607
ccc[cccqqqqqqqqccc]ccc	chr5:176517760-176518028(+)$1	268	103	125	16.0607
"""bb[aqqqqqqqqabb333h	chr15:75094499-75094772(+)$1	273	139	161	15.2134
eeee!!aqqqqqqqqa22eeee	chr17:63554744-63555036(-)$1	292	81	103	14.4093
####cccqqqqqqqqccc4444	chr16:22320570-22320834(+)$1	264	126	148	16.4837
gggggggqqqqqqqqggggggg	chr20:60881549-60881799(+)$1	250	185	207	15.4875
bb!!cccqqqqqqqqccc22bb	chr1:120285255-120285522(+)$1	267	72	94	15.2854
c!!bb[aqqqqqqqqa]bb22c	chr17:79177319-79177562(-)$1	243	128	150	14.3610
eeeeeeeqqqqqqqqeeeee22	chr14:31598536-31598818(-)$1	282	5	27	14.3105
ff!!cccqqqqqqqqccc]fff	chr17:1648661-1648893(+)$1	232	179	201	16.1508
a[eeeeeqqqqqqqqeeeee]a	chr19:40739840-40740083(-)$1	243	127	149	14.8012
dddddddqqqqqqqqddddfff	chr3:49742802-49743061(+)$1	259	75	97	14.2837
[dddd[aqqqqqqqqa]dddd]	chr7:47463706-47463950(-)$1	244	171	193	14.7477
eeeee[aqqqqqqqqaeeeee:	chr9:130929340-130929622(-)$1	282	214	236	13.9142
ff!!cccqqqqqqqqccc]fff	chr12:111890550-111890816(-)$1	266	79	101	16.1508
eea[cccqqqqqqqqccc]a]e	chr22:46684147-46684419(+)$1	272	212	234	16.1040
$$$ddddqqqqqqqqdddd333	chr17:74085519-74085777(-)$1	258	160	182	15.3374
ggggg[aqqqqqqqqa]ggggg	chr20:60899768-60899996(-)$1	228	48	70	15.6200
gggggggqqqqqqqqggggggg	chr1:17964892-17965156(+)$1	264	19	41	15.4875
[a!!cccqqqqqqqqccc]a]b	chr7:100853326-100853569(-)$1	243	131	153	16.5248
"bb[cccqqqqqqqqccc]bb3	chr17:61899106-61899387(-)$1	281	90	112	15.4425
c[eeeeeqqqqqqqqeeeee22	chr6:35436574-35436814(+)$1	240	78	100	14.5922
bb!!cccqqqqqqqqccc333b	chr16:15221904-15222153(-)$1	249	219	241	16.0668
eeee[bbqqqqqqqqbb22eee	chr22:46668083-46668332(+)$1	249	192	214	13.7867
ff[ddddqqqqqqqqdddd]ff	chr11:115049434-115049682(-)$1	248	215	237	15.0103
d[eeeeeqqqqqqqqeeeee]d	chr17:74083752-74083964(-)$1	212	106	128	14.5377
$$$$cccqqqqqqqqccc]hhh	chr3:50338132-50338429(-)$1	297	248	270	15.2296
cc"""bbqqqqqqqqbb22ccc	chr16:87446707-87446973(-)$1	266	73	95	14.4036
gggggggqqqqqqqqggggggg	chr12:56630762-56631014(+)$1	252	80	102	15.4875
ddd!!bbqqqqqqqqbbdddd]	chr15:101865125-101865420(-)$1	295	207	229	13.8444
"""ddddqqqqqqqqdddd]bb	chr17:80558979-80559228(+)$1	249	210	232	15.1567
[a[ddddqqqqqqqqdddda]d	chr14:104167395-104167646(+)$1	251	190	212	15.3161
c!!ddddqqqqqqqqdddd22c	chr19:19766149-19766411(-)$1	262	46	68	15.3404
fffff[aqqqqqqqqaffffff	chr17:20908259-20908473(-)$1	214	161	183	14.3481
[ffffffqqqqqqqqffffffc	chr16:27366885-27367174(+)$1	289	175	197	14.1525
"""ddddqqqqqqqqdddd]a]	chr17:37006641-37006884(-)$1	243	90	112	15.7153
cccddddqqqqqqqqdddd]cc	chr20:60903431-60903666(-)$1	235	90	112	14.9858
[bb[cccqqqqqqqqccc]bb]	chr13:113748676-113748930(+)$1	254	212	234	15.4030
e[eeeeeqqqqqqqqeeeeeee	chr16:2818844-2819097(+)$1	253	77	99	14.5625
iiiiiiiqqqqqqqqiiiiiii	chr9:117129884-117130127(-)$1	243	90	112	15.4289
$$$ddddqqqqqqqqdddd444	chr19:42402472-42402736(+)$1	264	155	177	14.9990
bb[a!!aqqqqqqqqa22abb2	chr2:74076302-74076585(+)$1	283	10	32	13.8637
!!eeeeeqqqqqqqqeeeeeee	chr16:1867259-1867550(-)$1	291	162	184	14.8453
gggggggqqqqqqqqggggggg	chr6:111280224-111280469(+)$1	245	41	63	15.4875
eee!!bbqqqqqqqqbb22eee	chr3:47889488-47889757(+)$1	269	204	226	14.0756
=======qqqqqqqq=======	chr3:9831178-9831464(-)$1	286	147	169	15.9108
[ffffffqqqqqqqqffffff]	chr20:61917507-61917764(+)$1	257	199	221	14.2355
ee[ddddqqqqqqqqdddd]ee	chr13:113980327-113980578(-)$1	251	200	222	15.0578
gggggggqqqqqqqqggggggg	chr19:804382-804625(+)$1	243	22	44	15.4875
""a[cccqqqqqqqqccc]a33	chr7:100231069-100231311(-)$1	242	81	103	16.8312
[ccccccqqqqqqqqccc]ccc	chr19:648453-648698(-)$1	245	192	214	15.9597
cc!!cccqqqqqqqqccc4444	chr11:993134-993380(+)$1	246	92	114	16.4745
ee!!cccqqqqqqqqccc22ee	chr20:60589656-60589928(-)$1	272	220	242	16.0049
d"""cccqqqqqqqqccc7777	chr3:48636554-48636806(-)$1	252	164	186	14.0130
ggggg[aqqqqqqqqagggggg	chr1:3382522-3382810(+)$1	288	168	190	15.7076
"""ddddqqqqqqqqdddd333	chrY:2722456-2722736(+)$1	280	17	39	16.0403
!ffffffqqqqqqqqffffff2	chr2:86271333-86271590(-)$1	257	160	182	14.0822

#otherMatches

#Seq PSSM
AGCUGUGAGCAAGGAUGCAGCU	chr20:44526380-44526650(+)$1	270	209	231	15.9108
ccucagcauccagccgcucagg	chr16:2313172-2313458(-)$1	286	241	263	15.1915
CCACGUGAACAAAACCACAGGA	chr20:62599214-62599457(-)$1	243	11	33	15.6203
GCAUUGAAGUUGAUAUCGAUGU	chr5:179259865-179260123(+)$1	258	166	188	15.4875
uguuugugugucggugggaacg	chr10:94451938-94452222(+)$1	284	15	37	15.6200
ACGAGCUCAUCCGCAAGCCCGU	chr19:11168776-11169058(+)$1	282	222	244	15.8403
GAGGGACAGGUGGACGUCCUCU	chr20:61591614-61591848(+)$1	234	134	156	14.6827
UAGGUACGCCAUGAAGUGCCUG	chr11:67048765-67049025(+)$1	260	161	183	15.4875
GGGGCGCCCCUCUCCGUGCCUU	chr19:2110807-2111057(-)$1	250	30	52	14.5066
CAGUGCCACGUCACAGGCCAUG	chr1:156352362-156352657(+)$1	295	215	237	16.2282
UGUGGCCAGUACUCCGGCCUCC	chr20:35467693-35468028(-)$1	335	114	136	15.5496
UCUACCUUUUUGUUUAGGUGAC	chr18:33799867-33800131(+)$1	264	133	155	15.1277
GGGCUUGCAAAGACCCGAACCC	chr20:55967553-55967831(+)$1	278	187	209	16.0607
CUCAUCUGAUCACUGAGAAGAG	chr5:176517760-176518028(+)$1	268	103	125	16.0607
CCUGGACUGACUCCUGCCUCCC	chr15:75094499-75094772(+)$1	273	139	161	15.2134
AAGCCUGUUUACUUUCUUGCUU	chr17:63554744-63555036(-)$1	292	81	103	14.4093
CCCUGGCUCGGAGCUGCCUUCC	chr16:22320570-22320834(+)$1	264	126	148	16.4837
CAUGAGCCACAGCCAGCUCAUG	chr20:60881549-60881799(+)$1	250	185	207	15.4875
GGCUGGAGCCCUACAUCCUACC	chr1:120285255-120285522(+)$1	267	72	94	15.2854
AUUCCUGUCUCUCUUCCGGCCU	chr17:79177319-79177562(-)$1	243	128	150	14.3610
CAAAAAUUUACAUAUAUUUUAG	chr14:31598536-31598818(-)$1	282	5	27	14.3105
GCCAGGCCCCAGAAUGCCAGUG	chr17:1648661-1648893(+)$1	232	179	201	16.1508
CAGCCCCCGCCAGCUGGGGCCG	chr19:40739840-40740083(-)$1	243	127	149	14.8012
GGGAGAGAUGAUUUCCUCUCCU	chr3:49742802-49743061(+)$1	259	75	97	14.2837
CGACCAGGCCCUUGACAGGUUU	chr7:47463706-47463950(-)$1	244	171	193	14.7477
GGGCUCGGAGACCUACAGCCCC	chr9:130929340-130929622(-)$1	282	214	236	13.9142
CGAGGAUAGUUUACAAUCAUGU	chr12:111890550-111890816(-)$1	266	79	101	16.1508
GGCCCGGAAGCACAGCCGAGAC	chr22:46684147-46684419(+)$1	272	212	234	16.1040
UGAAGCCAGAACAAAGGCUGGG	chr17:74085519-74085777(-)$1	258	160	182	15.3374
GAGGUUUGUGGUUGAAUACCUC	chr20:60899768-60899996(-)$1	228	48	70	15.6200
UGGGGCUAAAUGUGCAGCCUCA	chr1:17964892-17965156(+)$1	264	19	41	15.4875
GGAAGGAGCAGUACAUCCACGA	chr7:100853326-100853569(-)$1	243	131	153	16.5248
GUGUUAGGGUGGGUACUACCAG	chr17:61899106-61899387(-)$1	281	90	112	15.4425
GAGUGCCGACCCUGGGGCACGG	chr6:35436574-35436814(+)$1	240	78	100	14.5922
CAGCACCUUCUUCCUGGUCAAU	chr16:15221904-15222153(-)$1	249	219	241	16.0668
CUGCCUGUCAAAGCUCAAAGCA	chr22:46668083-46668332(+)$1	249	192	214	13.7867
CAGGGCAGUGGAUCAUGCCGUG	chr11:115049434-115049682(-)$1	248	215	237	15.0103
GGAGGCCGUCGGCCGGGCCUGC	chr17:74083752-74083964(-)$1	212	106	128	14.5377
CAUCCUGAACGUGACCAGUGGG	chr3:50338132-50338429(-)$1	297	248	270	15.2296
UGGAAGGAGCACCUGCCGACAG	chr16:87446707-87446973(-)$1	266	73	95	14.4036
CUCCAAGGGGUAGAGCUUGGAG	chr12:56630762-56631014(+)$1	252	80	102	15.4875
ACACAGCAGCAAGACGCUGUCG	chr15:101865125-101865420(-)$1	295	207	229	13.8444
CCUUUGCACAUGUUGGCAACAC	chr17:80558979-80559228(+)$1	249	210	232	15.1567
GGAGCUGGCCCGGGACAGCCAG	chr14:104167395-104167646(+)$1	251	190	212	15.3161
CGCUGCAGCUGCCUAUGUAUGG	chr19:19766149-19766411(-)$1	262	46	68	15.3404
CUGUUACAGCAAAGAGAGCAGG	chr17:20908259-20908473(-)$1	214	161	183	14.3481
UCCUGGGAAGUGGAGCCCAGGC	chr16:27366885-27367174(+)$1	289	175	197	14.1525
AACUGCUUUUGUGGUGGCACUG	chr17:37006641-37006884(-)$1	243	90	112	15.7153
UAGGGCUGCAUUCUGGGCCUCU	chr20:60903431-60903666(-)$1	235	90	112	14.9858
AGAGGAGCAGAUUAACUCGUCC	chr13:113748676-113748930(+)$1	254	212	234	15.4030
CGUUCCUCCAGGCCAAGGAAGG	chr16:2818844-2819097(+)$1	253	77	99	14.5625
GUCCUUCAGCUCCUGGAAGGAC	chr9:117129884-117130127(-)$1	243	90	112	15.4289
GGACUGGAGCUUGAACCAGAAG	chr19:42402472-42402736(+)$1	264	155	177	14.9990
GGAGAAGACACUUUACAGCCCU	chr2:74076302-74076585(+)$1	283	10	32	13.8637
AGCCAGGGUUCGGGGCCUGGGC	chr16:1867259-1867550(-)$1	291	162	184	14.8453
UGAAAACAGGGUCCGGUUUUCA	chr6:111280224-111280469(+)$1	245	41	63	15.4875
GGUAUCAAGAGCCAAUGUGAUC	chr3:47889488-47889757(+)$1	269	204	226	14.0756
GAUCUGCUUCUCCCUGCAGGUU	chr3:9831178-9831464(-)$1	286	147	169	15.9108
UCUCCUUCCAGGUCCAGGGAGU	chr20:61917507-61917764(+)$1	257	199	221	14.2355
GAAGACCGACCAGGAGGUCCUC	chr13:113980327-113980578(-)$1	251	200	222	15.0578
GGAGCUGAAGACCGACAGCUCU	chr19:804382-804625(+)$1	243	22	44	15.4875
CCCUCCCUCUCCUCCGGGCGCC	chr7:100231069-100231311(-)$1	242	81	103	16.8312
CAGCUGCACACUCCCGCAGGCU	chr19:648453-648698(-)$1	245	192	214	15.9597
CCUCGCCUUAACUCUGGCACCU	chr11:993134-993380(+)$1	246	92	114	16.4745
CUUGGCCCAGAUGCAGGCGCAG	chr20:60589656-60589928(-)$1	272	220	242	16.0049
CCACCCUAUCCCCACAGGCCCC	chr3:48636554-48636806(-)$1	252	164	186	14.0130
CUGUGUCUCUCUUUUGUGCAGA	chr1:3382522-3382810(+)$1	288	168	190	15.7076
AUGGGAGAUCAUCAGCUCUGUG	chrY:2722456-2722736(+)$1	280	17	39	16.0403
CAGGUGCAUCAUCAAGCACCUA	chr2:86271333-86271590(-)$1	257	160	182	14.0822

#DB
(((((((........)))))))	chr20:44526380-44526650(+)$1	1	209	231	15.9108
(((.(((........))).)))	chr16:2313172-2313458(-)$1	1	241	263	15.1915
(...(((........))).)))	chr20:62599214-62599457(-)$1	1	11	33	15.6203
(((((((........)))))))	chr5:179259865-179260123(+)$1	1	166	188	15.4875
(((((.(........).)))))	chr10:94451938-94452222(+)$1	1	15	37	15.6200
(((.(((........))).)))	chr19:11168776-11169058(+)$1	1	222	244	15.8403
((((.((........)))))))	chr20:61591614-61591848(+)$1	1	134	156	14.6827
(((((((........)))))))	chr11:67048765-67049025(+)$1	1	161	183	15.4875
(((((((........))))).)	chr19:2110807-2111057(-)$1	1	30	52	14.5066
((..(((........)))..))	chr1:156352362-156352657(+)$1	1	215	237	16.2282
...((((........)))).))	chr20:35467693-35468028(-)$1	1	114	136	15.5496
((.((((........)))))))	chr18:33799867-33800131(+)$1	1	133	155	15.1277
(((.(((........))).)))	chr20:55967553-55967831(+)$1	1	187	209	16.0607
(((.(((........))).)))	chr5:176517760-176518028(+)$1	1	103	125	16.0607
...((.(........)))...)	chr15:75094499-75094772(+)$1	1	139	161	15.2134
((((..(........)..))))	chr17:63554744-63555036(-)$1	1	81	103	14.4093
....(((........)))....	chr16:22320570-22320834(+)$1	1	126	148	16.4837
(((((((........)))))))	chr20:60881549-60881799(+)$1	1	185	207	15.4875
((..(((........)))..))	chr1:120285255-120285522(+)$1	1	72	94	15.2854
(..((.(........).))..)	chr17:79177319-79177562(-)$1	1	128	150	14.3610
(((((((........)))))..	chr14:31598536-31598818(-)$1	1	5	27	14.3105
((..(((........))).)))	chr17:1648661-1648893(+)$1	1	179	201	16.1508
(.(((((........))))).)	chr19:40739840-40740083(-)$1	1	127	149	14.8012
)))((((........))))(((	chr3:49742802-49743061(+)$1	1	75	97	14.2837
.((((.(........).)))).	chr7:47463706-47463950(-)$1	1	171	193	14.7477
(((((.(........)))))).	chr9:130929340-130929622(-)$1	1	214	236	13.9142
((..(((........))).)))	chr12:111890550-111890816(-)$1	1	79	101	16.1508
(((.(((........))).).)	chr22:46684147-46684419(+)$1	1	212	234	16.1040
...((((........))))...	chr17:74085519-74085777(-)$1	1	160	182	15.3374
(((((.(........).)))))	chr20:60899768-60899996(-)$1	1	48	70	15.6200
(((((((........)))))))	chr1:17964892-17965156(+)$1	1	19	41	15.4875
.(..(((........))).).)	chr7:100853326-100853569(-)$1	1	131	153	16.5248
.((.(((........))).)).	chr17:61899106-61899387(-)$1	1	90	112	15.4425
(.(((((........)))))..	chr6:35436574-35436814(+)$1	1	78	100	14.5922
((..(((........)))...)	chr16:15221904-15222153(-)$1	1	219	241	16.0668
((((.((........))..)))	chr22:46668083-46668332(+)$1	1	192	214	13.7867
((.((((........)))).))	chr11:115049434-115049682(-)$1	1	215	237	15.0103
(.(((((........))))).)	chr17:74083752-74083964(-)$1	1	106	128	14.5377
....(((........))).)))	chr3:50338132-50338429(-)$1	1	248	270	15.2296
((...((........))..)))	chr16:87446707-87446973(-)$1	1	73	95	14.4036
(((((((........)))))))	chr12:56630762-56631014(+)$1	1	80	102	15.4875
(((..((........)))))).	chr15:101865125-101865420(-)$1	1	207	229	13.8444
...((((........)))).))	chr17:80558979-80559228(+)$1	1	210	232	15.1567
.(.((((........))))).)	chr14:104167395-104167646(+)$1	1	190	212	15.3161
(..((((........))))..)	chr19:19766149-19766411(-)$1	1	46	68	15.3404
(((((.(........)))))))	chr17:20908259-20908473(-)$1	1	161	183	14.3481
.((((((........)))))))	chr16:27366885-27367174(+)$1	1	175	197	14.1525
...((((........)))).).	chr17:37006641-37006884(-)$1	1	90	112	15.7153
(((((((........)))).))	chr20:60903431-60903666(-)$1	1	90	112	14.9858
.((.(((........))).)).	chr13:113748676-113748930(+)$1	1	212	234	15.4030
(.(((((........)))))))	chr16:2818844-2819097(+)$1	1	77	99	14.5625
(((((((........)))))))	chr9:117129884-117130127(-)$1	1	90	112	15.4289
...((((........))))...	chr19:42402472-42402736(+)$1	1	155	177	14.9990
((.(..(........)..))).	chr2:74076302-74076585(+)$1	1	10	32	13.8637
..(((((........)))))))	chr16:1867259-1867550(-)$1	1	162	184	14.8453
(((((((........)))))))	chr6:111280224-111280469(+)$1	1	41	63	15.4875
(((..((........))..)))	chr3:47889488-47889757(+)$1	1	204	226	14.0756
(((((((........)))))))	chr3:9831178-9831464(-)$1	1	147	169	15.9108
.((((((........)))))).	chr20:61917507-61917764(+)$1	1	199	221	14.2355
((.((((........)))).))	chr13:113980327-113980578(-)$1	1	200	222	15.0578
(((((((........)))))))	chr19:804382-804625(+)$1	1	22	44	15.4875
..(.(((........))).)..	chr7:100231069-100231311(-)$1	1	81	103	16.8312
.((((((........))).)))	chr19:648453-648698(-)$1	1	192	214	15.9597
((..(((........)))....	chr11:993134-993380(+)$1	1	92	114	16.4745
((..(((........)))..))	chr20:60589656-60589928(-)$1	1	220	242	16.0049
(...(((........)))....	chr3:48636554-48636806(-)$1	1	164	186	14.0130
(((((.(........)))))))	chr1:3382522-3382810(+)$1	1	168	190	15.7076
...((((........))))...	chrY:2722456-2722736(+)$1	1	17	39	16.0403
.((((((........)))))).	chr2:86271333-86271590(-)$1	1	160	182	14.0822

#PSSM
g : 0.15	e : 0.15	c : 0.14	" : 0.10	[ : 0.10	d : 0.07	b : 0.05	f : 0.05	$ : 0.04	= : 0.02	! : 0.02	# : 0.01	a : 0.01	i : 0.01	
g : 0.15	e : 0.14	" : 0.11	c : 0.11	f : 0.10	b : 0.07	d : 0.05	[ : 0.05	! : 0.04	$ : 0.04	= : 0.02	a : 0.02	# : 0.01	i : 0.01	
e : 0.17	g : 0.15	! : 0.14	" : 0.11	[ : 0.07	d : 0.05	c : 0.05	f : 0.05	$ : 0.04	= : 0.02	a : 0.02	b : 0.02	# : 0.01	i : 0.01	
d : 0.20	g : 0.15	e : 0.14	! : 0.14	[ : 0.11	f : 0.05	" : 0.04	= : 0.02	b : 0.02	# : 0.01	$ : 0.01	i : 0.01	a : 0.01	c : 0.01	
c : 0.30	d : 0.20	g : 0.14	e : 0.11	! : 0.05	f : 0.05	= : 0.02	[ : 0.02	b : 0.02	" : 0.01	i : 0.01	
c : 0.30	d : 0.18	[ : 0.11	g : 0.10	e : 0.10	b : 0.07	f : 0.04	= : 0.02	! : 0.02	i : 0.01	
c : 0.30	d : 0.18	a : 0.14	g : 0.10	e : 0.10	b : 0.07	f : 0.04	= : 0.02	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.30	d : 0.18	a : 0.14	g : 0.10	e : 0.10	b : 0.07	f : 0.04	= : 0.02	i : 0.01	
c : 0.30	d : 0.18	g : 0.11	e : 0.11	b : 0.08	] : 0.05	f : 0.05	= : 0.02	2 : 0.02	i : 0.01	
c : 0.30	d : 0.21	g : 0.15	e : 0.11	2 : 0.07	f : 0.05	= : 0.02	b : 0.02	i : 0.01	
d : 0.21	] : 0.20	g : 0.15	e : 0.13	2 : 0.08	f : 0.05	= : 0.02	3 : 0.02	4 : 0.02	b : 0.01	i : 0.01	a : 0.01	7 : 0.01	
e : 0.17	g : 0.15	f : 0.10	] : 0.08	2 : 0.07	c : 0.07	b : 0.05	3 : 0.05	a : 0.05	d : 0.04	4 : 0.04	= : 0.02	h : 0.01	i : 0.01	7 : 0.01	
g : 0.15	e : 0.14	f : 0.11	c : 0.10	b : 0.08	] : 0.08	3 : 0.07	2 : 0.05	d : 0.04	4 : 0.04	= : 0.02	h : 0.01	a : 0.01	i : 0.01	7 : 0.01	
g : 0.15	e : 0.15	c : 0.14	f : 0.07	] : 0.07	b : 0.05	2 : 0.05	3 : 0.05	d : 0.04	h : 0.04	4 : 0.04	= : 0.02	a : 0.01	: : 0.01	i : 0.01	7 : 0.01	

#score	1049.937578571473
#seq	69
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF945YRD_CSTF2T_transcript_m1_run2.txt

#BEAR
=========[a!!eeeeemmmmeeeee22a]=========	chr7:702340-702625(-)$1	285	126	166	14.8445
c[ggggggg[a[bb[ccclllccc4444bb]a]ggggggg	chr17:7381161-7381392(-)$1	231	173	213	14.2645
###ccc[bb!!a[eeeeeooooooeeeeea]bb]ccceee	chr16:88570500-88570749(+)$1	249	91	131	14.7841
b!!ccc[ccc!!dddd[aooooooa]ddddccc]ccc22b	chr13:31039250-31039510(-)$1	260	35	75	15.0272
=========[bb!!ddddooooooddddbb]=========	chr20:62331168-62331391(-)$1	223	59	99	18.1221
:ggggggg####ffffffooooooffffffggggggg:ff	chr8:142423658-142423910(+)$1	252	33	73	13.5731
c[cccdddd####cccbboooooobb]cccdddd]ccccc	chr16:88564531-88564790(+)$1	259	162	202	14.8589
iiiiiii!!dddd!!cccooooooccc22dddd]iiiiii	chr12:62996869-62997141(+)$1	272	61	101	18.0111
:ccc[==========!!aooooooa22==========]cc	chr17:36745248-36745526(-)$1	278	1	41	17.7125
dddd[cccccc"""ddddoooooodddd333ccc]ccc]d	chr16:88905402-88905653(-)$1	251	10	50	15.9453
ddd[bb[a[ffffffcccooooooccc]ffffffa]bbdd	chr19:662482-662735(-)$1	253	142	182	13.9872
[ccc[ggggggg!!a!!cccmmmmccc]a22ggggggg33	chr12:133098596-133098877(+)$1	281	151	191	14.7538
ee[a[a[ccc[ccc[cccnnnnncccccc]ccc]a333a]	chr12:124918628-124918881(-)$1	253	78	118	14.2234
iiiiiiiii"""cccrrrrrrrrrccc22iiiiiiiiicc	chr2:100106082-100106364(-)$1	282	66	106	15.2585
dddd[ccc[bbbb!!cccooooooccc]bb]bbccc]ddd	chr1:895958-896236(+)$1	278	101	141	15.2800
[a[ggggggg$$$$$cccoooooocccgggggggaeeeee	chr1:44495856-44496132(-)$1	276	116	156	17.0854
!!=============cccooooooccc]============	chr9:140092789-140093037(-)$1	248	53	93	20.9367
ccc[dddd[bb####cccooooooccc]bb]dddd]ccc]	chr5:1099854-1100075(-)$1	221	142	182	16.6435
bb[bb[dddd$$$$$cccooooooccc333dddd]bb]bb	chr12:133131616-133131838(+)$1	222	133	173	15.1155
fggggggg[a$$$$$a[cccmmmmccc]a22a]ggggggg	chr13:113380337-113380604(+)$1	267	126	166	14.5414
iiii[bb[gggggggccc[aooooooa]ccc22ggggggg	chr13:27745392-27745689(-)$1	297	45	85	15.1030
d####bb[ddddbb[cccooooooccc22bb]dddd]bb3	chr16:85658980-85659234(+)$1	254	142	182	14.4755
:iiiiiiiiidddd[cccnnnnnccc333dddd]iiiiii	chr16:21513051-21513318(-)$1	267	65	105	13.7230
adddd[eeeee!!a!!bboooooobb22a22eeeee]ddd	chr20:61517209-61517461(-)$1	252	114	154	14.1709
iiiiiiiii!!a[a[cccooooooccc]a]a22iiiiiii	chr17:59474179-59474435(-)$1	256	100	140	20.0577
gggggga[a!!ccc[ccclllcccccc22a]a]ggggggg	chr19:1162807-1163033(-)$1	226	81	121	15.0721
ddeeeee[ccc"""bb[bboooooobb]bbccc]eeeee]	chr19:1957961-1958224(+)$1	263	36	76	13.3302
a[iiiiiiiii####ccclllccc4444iiiiiiiii]a]	chr8:143438748-143439018(-)$1	270	39	79	16.3458
iiiggggggg!!ccc!!aooooooa]ccc22ggggggg==	chr17:134332-134628(-)$1	296	75	115	17.9256
===============[bboooooobb==============	chr2:242597533-242597798(+)$1	265	138	178	19.3509
$$iiiiiiiii[ccc"""bbmmmmbb4444ccc]iiiiii	chr13:113428154-113428398(+)$1	244	61	101	13.6127
ff!!ffffff"""bb[aooooooa]bb]ffffff22ffff	chr17:73891965-73892212(-)$1	247	147	187	13.2733
dddd[ccc[ccc####bboooooobb666666ccc]ccc]	chr19:4456827-4457090(-)$1	263	165	205	13.7759
[a[ccc[a[a[ccc[ddddmmmmdddd]ccc]a]a]ccc]	chr16:87888712-87889019(-)$1	307	212	252	13.0526
]bbeeeeeeeeee!!cccooooooccc22eeeee333eee	chr21:46392938-46393182(+)$1	244	98	138	14.5424
ee[bb!!a[ccc"""a[cccmmmmccc]a333ccc]a22b	chr11:68135063-68135333(+)$1	270	57	97	13.9597
ffffffccc[bbccc[bboooooobbccc]bb]ccc22ff	chr19:54711415-54711720(+)$1	305	248	288	13.4906
"""bb[==========[allla]==========4444bb3	chr2:264197-264471(-)$1	274	217	257	14.6134
!!===========^^^^^^^^^^^^^^^^^^^========	chr4:1011878-1012126(+)$1	248	91	131	13.2773
ffff[gggggggccccccooooooccc]ccc22ggggggg	chr11:63831454-63831703(-)$1	249	154	194	17.1053
iiii$$$$$eeeeeddddoooooodddd]eeeeeiiiiii	chr16:87356280-87356524(-)$1	244	116	156	13.8499
[==========####ddddbbmmmmbb]dddd333=====	chr11:706030-706297(-)$1	267	63	103	13.4726
e!!dddd####eeeee[aooooooa]eeeee22dddd444	chr7:158205631-158205958(-)$1	327	171	211	13.7730
###a[eeeee"""a[cccooooooccc]a333eeeee]af	chr19:2329249-2329499(+)$1	250	93	133	18.3676
:bb!!===========[aooooooa]===========22b	chr19:1468335-1468628(-)$1	293	252	292	17.0871
gggg[dddd!!gggggggrrrrrrrrrggggggg4444dd	chr14:105249195-105249461(-)$1	266	54	94	11.8309
FFFiiiiiiiii####cccnnnnnccc]iiiiiiiiiFFF	chr19:2200278-2200544(+)$1	266	210	250	13.0302
fff[bb[ccc"""eeeeeooooooeeeee]cccbb]ffff	chr3:128211817-128212082(+)$1	265	179	219	14.3268
======"""eeeee[ccclllccceeeee]==========	chr11:70962237-70962515(-)$1	278	180	220	14.5152
eeaccc[bbddddeeeeeooooooeeeee333dddd]bbc	chr17:79055702-79055973(+)$1	271	170	210	12.9854
###ffffff[ccceeeeeooooooeeeee4444ccc]fff	chr11:66626749-66627008(-)$1	259	8	48	14.5381
======="""bb"""bb[ccclllccc22bb]bb]=====	chr17:75352293-75352523(+)$1	230	8	48	14.2613
==========[a[bbddddmmmmdddd]bb]a]=======	chr3:53205556-53205802(+)$1	246	136	176	14.6289

#otherMatches

#Seq PSSM
GGGCCCCAGGUGGUGGGGGGAGCUUUGGAGGCUGGGGCCC	chr7:702340-702625(-)$1	285	126	166	14.8445
CUGCCCAGCGUGUCAGGGUCACCCGGAGGAGAGGCUGGGC	chr17:7381161-7381392(-)$1	231	173	213	14.2645
AGCGGCAUCCAGACCCUGGAAAAACGGGGCAGAGGCCAGG	chr16:88570500-88570749(+)$1	249	91	131	14.7841
CGAGCcgggcgcuggcggggagcgcggccagccgggcggg	chr13:31039250-31039510(-)$1	260	35	75	15.0272
UGGUCUGGGGCUGAUCUUGCCUUGAGGAAGACCCAGGCCA	chr20:62331168-62331391(-)$1	223	59	99	18.1221
AGGGAGGGUUAGGGCCGUCAGAACACGGCUCCCUCCUGCC	chr8:142423658-142423910(+)$1	252	33	73	13.5731
GUCUCGCAGCCACGCCCCUUCCCCGGAGGUUUGCUGAGCA	chr16:88564531-88564790(+)$1	259	162	202	14.8589
UGGGGGCCCGGGUACCGGACUCGGCCGCAGCCCAGCCCCC	chr12:62996869-62997141(+)$1	272	61	101	18.0111
AGACCCCUGCAUGUAGACUGUCAUGAAUACGUGUGGGUGU	chr17:36745248-36745526(-)$1	278	1	41	17.7125
GUGUCCCCUGUGGCCGGGCGGUGACCUGUGGACGUGGGCG	chr16:88905402-88905653(-)$1	251	10	50	15.9453
GCCAGGGGACCCCCGCCGAGCGCGUGGUUGGGGGCGCCGG	chr19:662482-662735(-)$1	253	142	182	13.9872
AUGGCGGGGCCACUGCUGGCUCCCGUCUCUCUGGCCCCUU	chr12:133098596-133098877(+)$1	281	151	191	14.7538
GAUGUGCCUGCCUCACCCCCACUGGGGAGUCAGACCCCCC	chr12:124918628-124918881(-)$1	253	78	118	14.2234
GGUCUGGGGCAACGCGGAAGGUGAGCGAcccccgggccgg	chr2:100106082-100106364(-)$1	282	66	106	15.2585
GGUCCGGCAGCCGAAUGCAGCCCCGCAGCGAGCGCCCGGC	chr1:895958-896236(+)$1	278	101	141	15.2800
GCGCCCCGGUACUUUUCCACCGCAggggccgggggcgggg	chr1:44495856-44496132(-)$1	276	116	156	17.0854
GAUCGGGGUUGGCUGGAUCCUCGCAUCACAGUCAGCCUUG	chr9:140092789-140093037(-)$1	248	53	93	20.9367
GGUGUCCCGAGUUUUGCUGCACUUGGUUUUGGGGAGACCA	chr5:1099854-1100075(-)$1	221	142	182	16.6435
GAGGUACGUGUUUCCUGUGAUUUAAUAUUUCACGAACGUU	chr12:133131616-133131838(+)$1	222	133	173	15.1155
UGCGUGCAGGGAGAGGGGCCAGGGGGCACAGUGUGCAUGC	chr13:113380337-113380604(+)$1	267	126	166	14.5414
CUCGCGGGGCCUAGCGCCGgggcgggcgggcgggcugggc	chr13:27745392-27745689(-)$1	297	45	85	15.1030
CCCCUGGGAUUGACCUGCUCCCUUGCACUGUCCAAUGCUG	chr16:85658980-85659234(+)$1	254	142	182	14.4755
GCUUCUCUGGGCGGCGGCGCUUGGCCAUAUCGUGUCGGGG	chr16:21513051-21513318(-)$1	267	65	105	13.7230
CUGCCGAGGGGAGGGGCUAGCCUGGGAACAGCCCCUGGGC	chr20:61517209-61517461(-)$1	252	114	154	14.1709
GGGACCUUCCCCGGGUUGAGCCUCCAGGUGGCAGGGGGUC	chr17:59474179-59474435(-)$1	256	100	140	20.0577
GGGGCUCUGUCCCGUCCACAUUGGUGGCCCUGCAGCCCCA	chr19:1162807-1163033(-)$1	226	81	121	15.0721
UCUUGUCCGGAAGCCGGGUGUUGGGACGCGUCCUGACGAC	chr19:1957961-1958224(+)$1	263	36	76	13.3302
CAGAACUUAGGACUUGUCCUUGACUCUCCCUGGGUUCCGU	chr8:143438748-143439018(-)$1	270	39	79	16.3458
acagcagccuaagcugacuacgaUGGGGCAGAGGCUGUCC	chr17:134332-134628(-)$1	296	75	115	17.9256
CCUCCCAUCUUCAGCACUGCAGCUGGGCUGGAGAUGGGAG	chr2:242597533-242597798(+)$1	265	138	178	19.3509
CCUUCCCAGGGAAGUCCUGCCUGUGCCUCUGCUGCCUUGG	chr13:113428154-113428398(+)$1	244	61	101	13.6127
CUCGGUGCCCUCUGGAUGAACAAAGCCUGGGCGUGAGGCA	chr17:73891965-73892212(-)$1	247	147	187	13.2733
UCCUGGCGAAUUGAGAGGGAGGGGCUGAGGAAGGUGUGUG	chr19:4456827-4457090(-)$1	263	165	205	13.7759
ACGUGGCGAGAGCAGUGGGAGGCCUUGGUGCCCACCCCAG	chr16:87888712-87889019(-)$1	307	212	252	13.0526
GAGCCAGCCUCUGCCCACGGGAAGGUGUUUAGGGGAUGCU	chr21:46392938-46393182(+)$1	244	98	138	14.5424
UGGCGGAAAGGGAAAGAGUGAGGACAUACGGGCUCAUGAC	chr11:68135063-68135333(+)$1	270	57	97	13.9597
CCAGAAACUUCUGUCAUCAGGGGAGAGACGAGUGGUAUUU	chr19:54711415-54711720(+)$1	305	248	288	13.4906
CACCGUGCUUGGAGCCGCCGCGGGGCUCUGGGCUUUUCGA	chr2:264197-264471(-)$1	274	217	257	14.6134
CAUCCCAGGGCCUGCCCACCUCCACCCUCCCUGGGCCCUG	chr4:1011878-1012126(+)$1	248	91	131	13.2773
GUUUGUGUGGGUGUCGCUGUUCAAAGCUGGCUAACCUACA	chr11:63831454-63831703(-)$1	249	154	194	17.1053
GGGGCUAGUGAGAUGCUGUGUCCUCAGCUGUCUUCCUCUC	chr16:87356280-87356524(-)$1	244	116	156	13.8499
GUCUGUUCGCGCCUCGGCCGGGGCGCCAGGUCUCCCGCGG	chr11:706030-706297(-)$1	267	63	103	13.4726
UGGAGCUGAGGAGGGCGCUGAGACGGGCCCUGGAGCUGAG	chr7:158205631-158205958(-)$1	327	171	211	13.7730
GUGUGCAGAAGGAGGACCGACUAUGGUGUGGAUUCUGGAG	chr19:2329249-2329499(+)$1	250	93	133	18.3676
GCCCUCCUGGAUGGCGCGCCACUCCACGCUAUCCAGGUCG	chr19:1468335-1468628(-)$1	293	252	292	17.0871
AUGCUGGGCCCCGGGUGGCUGUCUCCUCCACCUGCCCCGU	chr14:105249195-105249461(-)$1	266	54	94	11.8309
GUUGGGCUGGGCCCCCGUGCUUUCCACUGCCCAGCCUGGG	chr19:2200278-2200544(+)$1	266	210	250	13.0302
GCGACGCUGGCCUCGCUACCUUCCUGGCGCUCACGCUGCC	chr3:128211817-128212082(+)$1	265	179	219	14.3268
GCGUGCGGACACCCUGCUCGAGGUGGGUGGGCGCGUGGGC	chr11:70962237-70962515(-)$1	278	180	220	14.5152
GGCCAGCGUGGUCCUGGAGACUGAUCCAGCAUGACCUACC	chr17:79055702-79055973(+)$1	271	170	210	12.9854
CGGGCUCUUGGGUUCACUCAGGAAGGUGAACAGGCUGGAG	chr11:66626749-66627008(-)$1	259	8	48	14.5381
UGCCCAGCCCGCACCGCGAGGCUUCCUAAGCAGCUCUGGG	chr17:75352293-75352523(+)$1	230	8	48	14.2613
gccuucugagcugccuggaaggaucugugggaauucagaa	chr3:53205556-53205802(+)$1	246	136	176	14.6289

#DB
(((((((((.(..(((((....)))))..).)))))))))	chr7:702340-702625(-)$1	1	126	166	14.8445
(.(((((((.(.((.(((...)))....)).).)))))))	chr17:7381161-7381392(-)$1	1	173	213	14.2645
...(((.((..(.(((((......)))))).)).))))))	chr16:88570500-88570749(+)$1	1	91	131	14.7841
(..(((.(((..((((.(......).))))))).)))..)	chr13:31039250-31039510(-)$1	1	35	75	15.0272
(((((((((.((..((((......)))))).)))))))))	chr20:62331168-62331391(-)$1	1	59	99	18.1221
.(((((((....((((((......))))))))))))).((	chr8:142423658-142423910(+)$1	1	33	73	13.5731
(.(((((((....(((((......)).))))))).)))))	chr16:88564531-88564790(+)$1	1	162	202	14.8589
(((((((..((((..(((......)))..)))).))))))	chr12:62996869-62997141(+)$1	1	61	101	18.0111
.(((.((((((((((..(......)..)))))))))).))	chr17:36745248-36745526(-)$1	1	1	41	17.7125
((((.((((((...((((......))))...))).))).)	chr16:88905402-88905653(-)$1	1	10	50	15.9453
(((.((.(.(((((((((......))).))))))).))))	chr19:662482-662735(-)$1	1	142	182	13.9872
.(((.(((((((..(..(((....))).)..)))))))..	chr12:133098596-133098877(+)$1	1	151	191	14.7538
((.(.(.(((.(((.(((.....)))))).))).)...).	chr12:124918628-124918881(-)$1	1	78	118	14.2234
(((((((((...(((.........)))..)))))))))((	chr2:100106082-100106364(-)$1	1	66	106	15.2585
((((.(((.((((..(((......))).)).))))).)))	chr1:895958-896236(+)$1	1	101	141	15.2800
.(.(((((((.....(((......))))))))))))))))	chr1:44495856-44496132(-)$1	1	116	156	17.0854
..((((((((((((((((......))).))))))))))))	chr9:140092789-140093037(-)$1	1	53	93	20.9367
(((.((((.((....(((......))).)).)))).))).	chr5:1099854-1100075(-)$1	1	142	182	16.6435
((.((.((((.....(((......)))...)))).)).))	chr12:133131616-133131838(+)$1	1	133	173	15.1155
)(((((((.(.....(.(((....))).)..).)))))))	chr13:113380337-113380604(+)$1	1	126	166	14.5414
((((.((.((((((((((.(......).)))..)))))))	chr13:27745392-27745689(-)$1	1	45	85	15.1030
(....((.((((((.(((......)))..)).)))).)).	chr16:85658980-85659234(+)$1	1	142	182	14.4755
.(((((((((((((.(((.....)))...)))).))))))	chr16:21513051-21513318(-)$1	1	65	105	13.7230
(((((.(((((..(..((......))..)..))))).)))	chr20:61517209-61517461(-)$1	1	114	154	14.1709
(((((((((..(.(.(((......))).).)..)))))))	chr17:59474179-59474435(-)$1	1	100	140	20.0577
(((((((.(..(((.(((...))))))..).).)))))))	chr19:1162807-1163033(-)$1	1	81	121	15.0721
(((((((.(((...((.((......)).))))).))))).	chr19:1957961-1958224(+)$1	1	36	76	13.3302
(.(((((((((....(((...)))....))))))))).).	chr8:143438748-143439018(-)$1	1	39	79	16.3458
)))(((((((..(((..(......).)))..)))))))((	chr17:134332-134628(-)$1	1	75	115	17.9256
(((((((((((((((.((......))))))))))))))))	chr2:242597533-242597798(+)$1	1	138	178	19.3509
..(((((((((.(((...((....))....))).))))))	chr13:113428154-113428398(+)$1	1	61	101	13.6127
((..((((((...((.(......).)).))))))..))))	chr17:73891965-73892212(-)$1	1	147	187	13.2733
((((.(((.(((....((......))......))).))).	chr19:4456827-4457090(-)$1	1	165	205	13.7759
.(.(((.(.(.(((.((((....)))).))).).).))).	chr16:87888712-87889019(-)$1	1	212	252	13.0526
.))((((((((((..(((......)))..)))))...)))	chr21:46392938-46393182(+)$1	1	98	138	14.5424
((.((..(.(((...(.(((....))).)...))).)..)	chr11:68135063-68135333(+)$1	1	57	97	13.9597
(((((((((.(((((.((......))))).)).)))..))	chr19:54711415-54711720(+)$1	1	248	288	13.4906
...((.((((((((((.(...).))))))))))....)).	chr2:264197-264471(-)$1	1	217	257	14.6134
..(((((((((((...................))))))))	chr4:1011878-1012126(+)$1	1	91	131	13.2773
((((.(((((((((((((......))).)))..)))))))	chr11:63831454-63831703(-)$1	1	154	194	17.1053
((((.....(((((((((......)))).)))))))))))	chr16:87356280-87356524(-)$1	1	116	156	13.8499
.((((((((((....((((((....)).))))...)))))	chr11:706030-706297(-)$1	1	63	103	13.4726
(..((((....(((((.(......).)))))..))))...	chr7:158205631-158205958(-)$1	1	171	211	13.7730
...(.(((((...(.(((......))).)...))))).))	chr19:2329249-2329499(+)$1	1	93	133	18.3676
.((..(((((((((((.(......).)))))))))))..)	chr19:1468335-1468628(-)$1	1	252	292	17.0871
((((.((((..(((((((.........)))))))....))	chr14:105249195-105249461(-)$1	1	54	94	11.8309
)))(((((((((....(((.....))).))))))))))))	chr19:2200278-2200544(+)$1	1	210	250	13.0302
(((.((.(((...(((((......))))).))))).))))	chr3:128211817-128212082(+)$1	1	179	219	14.3268
((((((...(((((.(((...)))))))).))))))))))	chr11:70962237-70962515(-)$1	1	180	220	14.5152
((((((.(((((((((((......)))))...)))).)))	chr17:79055702-79055973(+)$1	1	170	210	12.9854
...((((((.((((((((......)))))....))).)))	chr11:66626749-66627008(-)$1	1	8	48	14.5381
(((((((...((...((.(((...)))..)).)).)))))	chr17:75352293-75352523(+)$1	1	8	48	14.2613
((((((((((.(.((((((....)))).)).).)))))))	chr3:53205556-53205802(+)$1	1	136	176	14.6289

#PSSM
= : 0.11	i : 0.11	d : 0.11	f : 0.09	: : 0.07	[ : 0.07	e : 0.07	c : 0.05	# : 0.05	b : 0.03	! : 0.03	a : 0.03	g : 0.03	$ : 0.01	] : 0.01	" : 0.01	F : 0.01	
= : 0.13	i : 0.13	d : 0.11	# : 0.07	! : 0.07	g : 0.07	f : 0.07	[ : 0.05	c : 0.05	e : 0.05	b : 0.05	a : 0.03	$ : 0.01	" : 0.01	F : 0.01	
= : 0.16	i : 0.16	g : 0.09	d : 0.09	[ : 0.09	# : 0.07	c : 0.07	! : 0.05	f : 0.05	b : 0.03	e : 0.01	" : 0.01	F : 0.01	a : 0.01	
= : 0.16	i : 0.16	g : 0.13	c : 0.13	d : 0.09	[ : 0.05	b : 0.05	f : 0.05	a : 0.03	e : 0.03	! : 0.03	# : 0.01	
[ : 0.18	= : 0.16	i : 0.13	g : 0.11	c : 0.09	b : 0.09	d : 0.05	f : 0.05	e : 0.03	# : 0.01	$ : 0.01	! : 0.01	
= : 0.20	g : 0.15	c : 0.13	i : 0.13	d : 0.07	b : 0.07	[ : 0.05	e : 0.05	f : 0.05	a : 0.01	! : 0.01	$ : 0.01	
= : 0.20	g : 0.13	[ : 0.13	i : 0.13	d : 0.09	c : 0.07	e : 0.07	b : 0.03	f : 0.03	a : 0.01	! : 0.01	$ : 0.01	" : 0.01	
= : 0.18	g : 0.13	c : 0.13	i : 0.11	d : 0.07	[ : 0.07	a : 0.05	e : 0.05	b : 0.03	f : 0.03	" : 0.03	! : 0.01	$ : 0.01	# : 0.01	
= : 0.18	[ : 0.13	g : 0.11	c : 0.11	i : 0.11	d : 0.07	e : 0.05	b : 0.03	# : 0.03	f : 0.03	" : 0.03	! : 0.01	a : 0.01	$ : 0.01	
= : 0.15	c : 0.13	[ : 0.09	g : 0.09	e : 0.09	! : 0.07	d : 0.07	i : 0.07	# : 0.05	f : 0.03	" : 0.03	b : 0.03	a : 0.03	
= : 0.13	! : 0.11	b : 0.09	c : 0.09	d : 0.07	" : 0.07	e : 0.07	# : 0.05	g : 0.05	[ : 0.05	$ : 0.05	i : 0.05	a : 0.03	f : 0.01	
= : 0.11	" : 0.11	c : 0.11	# : 0.09	! : 0.07	b : 0.07	d : 0.07	g : 0.07	e : 0.07	a : 0.05	$ : 0.05	[ : 0.03	f : 0.01	i : 0.01	
c : 0.16	" : 0.13	# : 0.11	= : 0.11	! : 0.07	d : 0.07	e : 0.07	b : 0.05	[ : 0.05	$ : 0.05	f : 0.03	g : 0.03	
c : 0.16	e : 0.15	! : 0.09	= : 0.09	# : 0.09	b : 0.07	" : 0.07	$ : 0.05	a : 0.05	d : 0.03	f : 0.03	g : 0.03	^ : 0.01	
[ : 0.16	e : 0.11	c : 0.11	= : 0.09	# : 0.09	d : 0.07	! : 0.07	$ : 0.05	b : 0.05	f : 0.03	g : 0.03	" : 0.03	a : 0.01	^ : 0.01	
c : 0.37	d : 0.13	e : 0.11	! : 0.07	[ : 0.05	a : 0.03	b : 0.03	# : 0.03	= : 0.03	f : 0.01	r : 0.01	" : 0.01	^ : 0.01	g : 0.01	
c : 0.37	[ : 0.13	d : 0.11	b : 0.11	e : 0.09	! : 0.05	f : 0.01	r : 0.01	" : 0.01	a : 0.01	^ : 0.01	g : 0.01	
c : 0.43	a : 0.11	d : 0.11	b : 0.11	e : 0.09	f : 0.01	r : 0.01	" : 0.01	o : 0.01	^ : 0.01	g : 0.01	[ : 0.01	
o : 0.58	l : 0.09	c : 0.09	d : 0.05	n : 0.03	r : 0.03	b : 0.03	m : 0.01	[ : 0.01	^ : 0.01	
o : 0.60	l : 0.09	c : 0.07	m : 0.05	n : 0.05	r : 0.03	b : 0.03	a : 0.01	^ : 0.01	
o : 0.62	m : 0.13	l : 0.09	n : 0.05	r : 0.03	^ : 0.01	b : 0.01	c : 0.01	
o : 0.62	m : 0.15	c : 0.07	n : 0.05	r : 0.03	a : 0.01	^ : 0.01	l : 0.01	
o : 0.62	m : 0.13	c : 0.07	n : 0.05	r : 0.03	e : 0.01	] : 0.01	^ : 0.01	l : 0.01	
o : 0.60	c : 0.11	m : 0.09	r : 0.03	d : 0.03	e : 0.01	a : 0.01	= : 0.01	^ : 0.01	n : 0.01	l : 0.01	
c : 0.39	e : 0.11	b : 0.11	a : 0.09	d : 0.09	4 : 0.03	o : 0.03	f : 0.01	] : 0.01	= : 0.01	^ : 0.01	m : 0.01	r : 0.01	
c : 0.39	b : 0.16	e : 0.11	d : 0.09	] : 0.07	4 : 0.03	f : 0.01	2 : 0.01	o : 0.01	= : 0.01	^ : 0.01	r : 0.01	
c : 0.41	e : 0.13	d : 0.11	4 : 0.05	b : 0.05	= : 0.05	2 : 0.03	f : 0.01	] : 0.01	a : 0.01	3 : 0.01	6 : 0.01	^ : 0.01	r : 0.01	
] : 0.32	2 : 0.15	e : 0.11	d : 0.07	c : 0.07	= : 0.07	4 : 0.05	g : 0.03	3 : 0.03	f : 0.01	6 : 0.01	^ : 0.01	
2 : 0.13	c : 0.13	b : 0.11	e : 0.11	a : 0.11	= : 0.09	f : 0.05	3 : 0.05	d : 0.03	g : 0.03	i : 0.03	4 : 0.01	6 : 0.01	^ : 0.01	] : 0.01	
b : 0.15	= : 0.09	3 : 0.09	] : 0.09	d : 0.07	c : 0.07	2 : 0.07	a : 0.05	f : 0.05	i : 0.05	e : 0.05	g : 0.03	4 : 0.03	6 : 0.01	^ : 0.01	
] : 0.15	c : 0.15	= : 0.11	d : 0.09	3 : 0.07	2 : 0.07	g : 0.05	i : 0.05	b : 0.05	e : 0.05	f : 0.03	a : 0.01	6 : 0.01	^ : 0.01	4 : 0.01	
= : 0.15	c : 0.11	d : 0.11	g : 0.09	a : 0.07	2 : 0.07	b : 0.05	i : 0.05	] : 0.05	e : 0.05	3 : 0.05	f : 0.03	6 : 0.01	^ : 0.01	4 : 0.01	
= : 0.16	c : 0.15	d : 0.13	] : 0.09	g : 0.09	2 : 0.07	e : 0.07	b : 0.05	i : 0.05	f : 0.03	a : 0.01	3 : 0.01	4 : 0.01	
g : 0.18	= : 0.16	] : 0.15	d : 0.11	c : 0.11	i : 0.07	e : 0.07	f : 0.03	b : 0.03	4 : 0.01	3 : 0.01	
= : 0.16	g : 0.15	i : 0.15	c : 0.13	] : 0.07	a : 0.07	d : 0.07	e : 0.05	3 : 0.03	4 : 0.03	2 : 0.01	b : 0.01	
= : 0.20	g : 0.15	i : 0.15	c : 0.13	] : 0.11	e : 0.07	d : 0.05	3 : 0.03	4 : 0.03	b : 0.01	2 : 0.01	
= : 0.20	g : 0.15	i : 0.15	c : 0.13	] : 0.09	e : 0.05	b : 0.03	3 : 0.03	f : 0.03	4 : 0.03	a : 0.01	2 : 0.01	d : 0.01	
= : 0.16	g : 0.13	i : 0.11	c : 0.09	e : 0.07	2 : 0.07	] : 0.07	b : 0.07	f : 0.05	d : 0.03	4 : 0.03	: : 0.01	3 : 0.01	F : 0.01	
= : 0.18	c : 0.11	g : 0.09	f : 0.09	i : 0.09	e : 0.07	d : 0.07	b : 0.07	2 : 0.05	a : 0.05	] : 0.01	3 : 0.01	4 : 0.01	F : 0.01	
= : 0.18	f : 0.11	] : 0.11	g : 0.09	i : 0.09	d : 0.09	b : 0.07	c : 0.07	e : 0.05	3 : 0.05	4 : 0.01	F : 0.01	

#score	801.8960847567959
#seq	53
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_UTR_m3_run1.txt

#BEAR
=======mmmm======	chr15:77242025-77242307(+)$1	282	186	203	7.0219
ffffffoooooofffff	chr1:151376538-151376834(-)$1	296	114	131	9.8488
dffffffmmmmffffff	chr1:203276584-203276885(+)$1	301	162	179	10.3956
[ffffffnnnnnfffff	chr15:34671260-34671628(-)$1	368	104	121	9.8504
[ffffffnnnnnfffff	chr17:46698476-46698707(-)$1	231	40	57	9.8504
gggggggmmmmgggggg	chr5:96365744-96365999(+)$1	255	79	96	7.9606
ffffffnnnnnffffff	chr19:18390586-18390863(-)$1	277	18	35	8.9804
gggggggoooooogggg	chr8:101715240-101715492(-)$1	252	164	181	7.4834
fffff[annnnna]fff	chr1:150237738-150238028(-)$1	290	115	132	8.0505
ffffffoooooofffff	chr6:16148229-16148465(+)$1	236	125	142	9.8488
$ffffffmmmmffffff	chr11:47491703-47491931(-)$1	228	157	174	10.6780
gggggggmmmmgggggg	chr3:50296203-50296465(+)$1	262	146	163	7.9606
[ffffffooooooffff	chr18:55216847-55217109(-)$1	262	102	119	10.1536
[ffffffmmmmffffff	chr11:85989505-85989841(+)$1	336	8	25	10.9990
"fffffflllffffff3	chr10:35859026-35859317(+)$1	291	35	52	9.6352
[ggggggglllgggggg	chr17:47128505-47128752(+)$1	247	95	112	7.2786
gggggggoooooogggg	chr4:174252911-174253218(-)$1	307	161	178	7.4834
fff[cccmmmmccc]ff	chr1:78413984-78414248(-)$1	264	203	220	8.1529
""fffffflllffffff	chr15:38776983-38777255(+)$1	272	19	36	9.2608
iffffffooooooffff	chr16:4307125-4307413(-)$1	288	171	188	9.8814
[ffffffmmmmffffff	chr1:93602579-93602835(+)$1	256	222	239	10.9990
fff[cccmmmmccc]ff	chr19:1258684-1258928(+)$1	244	181	198	8.1529
[fffffflllffffff]	chr19:18390666-18390885(-)$1	219	119	136	9.8492
:ffffffmmmmffffff	chr3:180702226-180702520(-)$1	294	10	27	9.7063
Fffffffmmmmffffff	chr10:74035222-74035599(+)$1	377	165	182	10.3171
!ffffffmmmmffffff	chr20:45838945-45839220(-)$1	275	226	243	10.9291
gggggggoooooogggg	chr22:36677295-36677528(-)$1	233	160	177	7.4834
!ffffffmmmmffffff	chr14:70238190-70238477(+)$1	287	127	144	10.9291
cffffffmmmmffffff	chr1:182352438-182352675(-)$1	237	104	121	10.6073
ffffffoooooofffff	chr5:137088274-137088556(-)$1	282	61	78	9.8488
gffffffmmmmffffff	chr1:162569462-162569710(+)$1	248	6	23	10.7542
iiiiiiimmmmiiiiii	chr1:182352694-182352978(-)$1	284	96	113	6.6838
#fffffflllfffffff	chr8:101734116-101734344(-)$1	228	14	31	10.0085
gggggggmmmmgggggg	chr2:204296397-204296646(+)$1	249	217	234	7.9606
[ffffffnnnnnfffff	chr6:37142966-37143259(+)$1	293	208	225	9.8504
gggggggoooooogggg	chr6:33377541-33377786(+)$1	245	136	153	7.4834
gggggggmmmmgggggg	chr3:51435663-51435934(-)$1	271	140	157	7.9606
+fffffflllffffff4	chr8:90945704-90945981(-)$1	277	85	102	8.7482
[ffffffnnnnnfffff	chr10:22032241-22032553(+)$1	312	62	79	9.8504
[ffffffmmmmffffff	chr6:33377426-33377716(+)$1	290	42	59	10.9990
ffffffoooooofffff	chr6:16148272-16148538(+)$1	266	82	99	9.8488
gggggggmmmmgggggg	chr15:77241869-77242152(+)$1	283	27	44	7.9606
ggggggglllggggggg	chr4:174252775-174253014(-)$1	239	122	139	7.1829
!ffffffnnnnnfffff	chr5:126172502-126172792(+)$1	290	60	77	9.7804
fff[cccmmmmccc333	chr1:202860148-202860430(-)$1	282	246	263	7.1400
ffffffoooooofffff	chr17:7757640-7757915(+)$1	275	115	132	9.8488
gggggggmmmmgggggg	chr1:29474185-29474471(-)$1	286	250	267	7.9606
%ffffffmmmmffffff	chr17:56050985-56051202(-)$1	217	190	207	10.2501
#fffffflllfffffff	chr8:101734155-101734404(-)$1	249	74	91	10.0085
hhfffffflllffffff	chr4:78088074-78088336(+)$1	262	204	221	8.7961
[ffffffnnnnnfffff	chr16:56462981-56463229(-)$1	248	52	69	9.8504
%ffffffmmmmffffff	chr17:56050935-56051185(-)$1	250	173	190	10.2501
:ffffffmmmmffffff	chr14:35870988-35871277(-)$1	289	85	102	9.7063
fffffffmmmmffffff	chr14:56150920-56151169(+)$1	249	115	132	10.6613

#otherMatches

#Seq PSSM
UUUUUGAGUGAUUAAAA	chr15:77242025-77242307(+)$1	282	186	203	7.0219
UUUUAUAUAAAAAUGAA	chr1:151376538-151376834(-)$1	296	114	131	9.8488
AGCUGCUUGGAAGUGGC	chr1:203276584-203276885(+)$1	301	162	179	10.3956
CUGAAAUAAAACAUUUU	chr15:34671260-34671628(-)$1	368	104	121	9.8504
GGGGUGAUUGUCUCGCU	chr17:46698476-46698707(-)$1	231	40	57	9.8504
uaugaaaauauuuuuau	chr5:96365744-96365999(+)$1	255	79	96	7.9606
CAGAGUGUUCGAUUCUG	chr19:18390586-18390863(-)$1	277	18	35	8.9804
CUGGGAAAAAGAAUUUU	chr8:101715240-101715492(-)$1	252	164	181	7.4834
GAGGGGCGGGGAGGUUU	chr1:150237738-150238028(-)$1	290	115	132	8.0505
GCCUUUAUUCCAAGAGG	chr6:16148229-16148465(+)$1	236	125	142	9.8488
UUUCUAUUUUUAUAGAA	chr11:47491703-47491931(-)$1	228	157	174	10.6780
UCUAGAAAACUUUUUAG	chr3:50296203-50296465(+)$1	262	146	163	7.9606
GAUUUUUUAUUAUAAAA	chr18:55216847-55217109(-)$1	262	102	119	10.1536
CUUAUAGCUGUUUGUGA	chr11:85989505-85989841(+)$1	336	8	25	10.9990
CAUUGUUGCAAGCAAUA	chr10:35859026-35859317(+)$1	291	35	52	9.6352
AUUUUUUUAAUGAAAAG	chr17:47128505-47128752(+)$1	247	95	112	7.2786
GUAGCUUUUUGAUGGGC	chr4:174252911-174253218(-)$1	307	161	178	7.4834
UUUCUUAGCAAUGAUAA	chr1:78413984-78414248(-)$1	264	203	220	8.1529
GUAAGAACAUUGUUUUU	chr15:38776983-38777255(+)$1	272	19	36	9.2608
AAGAGGCCACCGUGCCU	chr16:4307125-4307413(-)$1	288	171	188	9.8814
UUAAAUCUUAAGAUUUG	chr1:93602579-93602835(+)$1	256	222	239	10.9990
UACCUAUUUAAAUGUGU	chr19:1258684-1258928(+)$1	244	181	198	8.1529
GGUUUUUUAAAGAAAUG	chr19:18390666-18390885(-)$1	219	119	136	9.8492
UUCUUCCUAUAGGAGGA	chr3:180702226-180702520(-)$1	294	10	27	9.7063
CUGGUCUGAAGGGACCA	chr10:74035222-74035599(+)$1	377	165	182	10.3171
GUCUGUCACACGACGGA	chr20:45838945-45839220(-)$1	275	226	243	10.9291
GAUGUUUUCCACUGAGC	chr22:36677295-36677528(-)$1	233	160	177	7.4834
GAUAUCUUUGUAGAUGU	chr14:70238190-70238477(+)$1	287	127	144	10.9291
CACUUGUCCACAUAGGU	chr1:182352438-182352675(-)$1	237	104	121	10.6073
UUGCUGAUUCUGUAGCA	chr5:137088274-137088556(-)$1	282	61	78	9.8488
UGGAAGCAUUUGUUUUU	chr1:162569462-162569710(+)$1	248	6	23	10.7542
UUUAUAUUUAAAUGUAA	chr1:182352694-182352978(-)$1	284	96	113	6.6838
AGGAGGCGGUGCUUCCC	chr8:101734116-101734344(-)$1	228	14	31	10.0085
CCAUUUUUCUUAAAAUG	chr2:204296397-204296646(+)$1	249	217	234	7.9606
CGUUUUUUGAAUAAAAA	chr6:37142966-37143259(+)$1	293	208	225	9.8504
GCAGAUACUUUCAUAUC	chr6:33377541-33377786(+)$1	245	136	153	7.4834
GGGUAUGAACUUAUAUC	chr3:51435663-51435934(-)$1	271	140	157	7.9606
uauauaaacuuuauauu	chr8:90945704-90945981(-)$1	277	85	102	8.7482
UAAUUGGUAGAUUUAAU	chr10:22032241-22032553(+)$1	312	62	79	9.8504
GACGGAUCCAGAUCugu	chr6:33377426-33377716(+)$1	290	42	59	10.9990
GCCUUUAUUCCAAGAGG	chr6:16148272-16148538(+)$1	266	82	99	9.8488
AUAUUAUUUAAGUAGUA	chr15:77241869-77242152(+)$1	283	27	44	7.9606
Guuuuuuuaaaaaaaau	chr4:174252775-174253014(-)$1	239	122	139	7.1829
AUUCUUAAUUCAUGAGG	chr5:126172502-126172792(+)$1	290	60	77	9.7804
GAUCAGCCGUAGCUCCU	chr1:202860148-202860430(-)$1	282	246	263	7.1400
GGUUUUAAAGAAAGAAC	chr17:7757640-7757915(+)$1	275	115	132	9.8488
GAUAUAUCUUGAUAUGU	chr1:29474185-29474471(-)$1	286	250	267	7.9606
AGAGUCCAGUGGGAUUC	chr17:56050985-56051202(-)$1	217	190	207	10.2501
AGGAGGCGGUGCUUCCC	chr8:101734155-101734404(-)$1	249	74	91	10.0085
CAACAUCCGUUGGAUGU	chr4:78088074-78088336(+)$1	262	204	221	8.7961
UACGUUUAUGGCAAAUG	chr16:56462981-56463229(-)$1	248	52	69	9.8504
AGAGUCCAGUGGGAUUC	chr17:56050935-56051185(-)$1	250	173	190	10.2501
CUUGUAUAUUUGUACAA	chr14:35870988-35871277(-)$1	289	85	102	9.7063
UGUUUGAAUAAUUAGAC	chr14:56150920-56151169(+)$1	249	115	132	10.6613

#DB
(((((((....))))))	chr15:77242025-77242307(+)$1	1	186	203	7.0219
((((((......)))))	chr1:151376538-151376834(-)$1	1	114	131	9.8488
)((((((....))))))	chr1:203276584-203276885(+)$1	1	162	179	10.3956
.((((((.....)))))	chr15:34671260-34671628(-)$1	1	104	121	9.8504
.((((((.....)))))	chr17:46698476-46698707(-)$1	1	40	57	9.8504
(((((((....))))))	chr5:96365744-96365999(+)$1	1	79	96	7.9606
((((((.....))))))	chr19:18390586-18390863(-)$1	1	18	35	8.9804
(((((((......))))	chr8:101715240-101715492(-)$1	1	164	181	7.4834
(((((.(.....).)))	chr1:150237738-150238028(-)$1	1	115	132	8.0505
((((((......)))))	chr6:16148229-16148465(+)$1	1	125	142	9.8488
.((((((....))))))	chr11:47491703-47491931(-)$1	1	157	174	10.6780
(((((((....))))))	chr3:50296203-50296465(+)$1	1	146	163	7.9606
.((((((......))))	chr18:55216847-55217109(-)$1	1	102	119	10.1536
.((((((....))))))	chr11:85989505-85989841(+)$1	1	8	25	10.9990
.((((((...)))))).	chr10:35859026-35859317(+)$1	1	35	52	9.6352
.(((((((...))))))	chr17:47128505-47128752(+)$1	1	95	112	7.2786
(((((((......))))	chr4:174252911-174253218(-)$1	1	161	178	7.4834
(((.(((....))).))	chr1:78413984-78414248(-)$1	1	203	220	8.1529
..((((((...))))))	chr15:38776983-38777255(+)$1	1	19	36	9.2608
)((((((......))))	chr16:4307125-4307413(-)$1	1	171	188	9.8814
.((((((....))))))	chr1:93602579-93602835(+)$1	1	222	239	10.9990
(((.(((....))).))	chr19:1258684-1258928(+)$1	1	181	198	8.1529
.((((((...)))))).	chr19:18390666-18390885(-)$1	1	119	136	9.8492
.((((((....))))))	chr3:180702226-180702520(-)$1	1	10	27	9.7063
(((((((....))))))	chr10:74035222-74035599(+)$1	1	165	182	10.3171
.((((((....))))))	chr20:45838945-45839220(-)$1	1	226	243	10.9291
(((((((......))))	chr22:36677295-36677528(-)$1	1	160	177	7.4834
.((((((....))))))	chr14:70238190-70238477(+)$1	1	127	144	10.9291
)((((((....))))))	chr1:182352438-182352675(-)$1	1	104	121	10.6073
((((((......)))))	chr5:137088274-137088556(-)$1	1	61	78	9.8488
(((((((....))))))	chr1:162569462-162569710(+)$1	1	6	23	10.7542
(((((((....))))))	chr1:182352694-182352978(-)$1	1	96	113	6.6838
.((((((...)))))))	chr8:101734116-101734344(-)$1	1	14	31	10.0085
(((((((....))))))	chr2:204296397-204296646(+)$1	1	217	234	7.9606
.((((((.....)))))	chr6:37142966-37143259(+)$1	1	208	225	9.8504
(((((((......))))	chr6:33377541-33377786(+)$1	1	136	153	7.4834
(((((((....))))))	chr3:51435663-51435934(-)$1	1	140	157	7.9606
.((((((...)))))).	chr8:90945704-90945981(-)$1	1	85	102	8.7482
.((((((.....)))))	chr10:22032241-22032553(+)$1	1	62	79	9.8504
.((((((....))))))	chr6:33377426-33377716(+)$1	1	42	59	10.9990
((((((......)))))	chr6:16148272-16148538(+)$1	1	82	99	9.8488
(((((((....))))))	chr15:77241869-77242152(+)$1	1	27	44	7.9606
(((((((...)))))))	chr4:174252775-174253014(-)$1	1	122	139	7.1829
.((((((.....)))))	chr5:126172502-126172792(+)$1	1	60	77	9.7804
(((.(((....)))...	chr1:202860148-202860430(-)$1	1	246	263	7.1400
((((((......)))))	chr17:7757640-7757915(+)$1	1	115	132	9.8488
(((((((....))))))	chr1:29474185-29474471(-)$1	1	250	267	7.9606
.((((((....))))))	chr17:56050985-56051202(-)$1	1	190	207	10.2501
.((((((...)))))))	chr8:101734155-101734404(-)$1	1	74	91	10.0085
))((((((...))))))	chr4:78088074-78088336(+)$1	1	204	221	8.7961
.((((((.....)))))	chr16:56462981-56463229(-)$1	1	52	69	9.8504
.((((((....))))))	chr17:56050935-56051185(-)$1	1	173	190	10.2501
.((((((....))))))	chr14:35870988-35871277(-)$1	1	85	102	9.7063
)((((((....))))))	chr14:56150920-56151169(+)$1	1	115	132	10.6613

#PSSM
g : 0.22	f : 0.20	[ : 0.20	! : 0.05	" : 0.03	i : 0.03	: : 0.03	# : 0.03	% : 0.03	= : 0.01	d : 0.01	$ : 0.01	F : 0.01	c : 0.01	+ : 0.01	h : 0.01	
f : 0.70	g : 0.22	= : 0.01	" : 0.01	i : 0.01	h : 0.01	
f : 0.74	g : 0.22	= : 0.01	i : 0.01	
f : 0.68	g : 0.22	[ : 0.05	= : 0.01	i : 0.01	
f : 0.68	g : 0.22	c : 0.05	= : 0.01	i : 0.01	
f : 0.66	g : 0.22	c : 0.05	= : 0.01	[ : 0.01	i : 0.01	
f : 0.55	g : 0.22	o : 0.09	c : 0.05	= : 0.01	n : 0.01	a : 0.01	i : 0.01	
m : 0.48	o : 0.20	n : 0.14	l : 0.11	f : 0.03	g : 0.01	
m : 0.48	o : 0.20	l : 0.16	n : 0.14	
m : 0.48	o : 0.20	l : 0.16	n : 0.14	
m : 0.48	o : 0.20	n : 0.14	f : 0.09	l : 0.05	g : 0.01	
f : 0.42	o : 0.20	g : 0.14	n : 0.12	c : 0.05	= : 0.01	i : 0.01	
f : 0.62	g : 0.14	o : 0.11	c : 0.05	= : 0.01	a : 0.01	i : 0.01	
f : 0.66	g : 0.22	c : 0.05	= : 0.01	] : 0.01	i : 0.01	
f : 0.68	g : 0.22	] : 0.03	= : 0.01	i : 0.01	3 : 0.01	
f : 0.72	g : 0.22	= : 0.01	i : 0.01	3 : 0.01	
f : 0.66	g : 0.22	3 : 0.03	= : 0.01	] : 0.01	i : 0.01	4 : 0.01	

#score	499.14318098917374
#seq	54
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF427AAU_EXOSC5_CDS_m2_run2.txt

#BEAR
d[a[gggggggmmmmggggggga]d	chr17:29632159-29632448(+)$1	289	184	209	11.8123
""dddd[ddddmmmmddddddddgg	chr3:99567346-99567589(+)$1	243	200	225	8.7423
c==========mmmm==========	chr21:38119994-38120204(+)$1	210	116	141	12.7374
iiiiiii[cccnnnnnccc]iiiii	chr17:29632440-29632688(+)$1	248	171	196	8.2963
bb[dddd[cccmmmmccc]ddddbb	chr7:104753296-104753543(-)$1	247	39	64	8.3929
gggggg[ddddmmmmdddd]ggggg	chr7:104752495-104752757(-)$1	262	167	192	10.1420
ffffgggggggooooooggggggg8	chr17:29632117-29632359(+)$1	242	182	207	8.0245
=========oooooo==========	chrX:41193696-41193954(+)$1	258	221	246	10.6129
fff[ccc!!bbmmmmbb22ccc]ff	chr3:99549283-99549558(+)$1	275	10	35	8.8783
ccc[ccc!!bbmmmmbb333ccccc	chr17:29623081-29623317(+)$1	236	104	129	9.9924
d[a[gggggggmmmmggggggga]d	chr17:29632280-29632538(+)$1	258	63	88	11.8123
a[ccc[eeeeemmmmeeeee333cc	chr15:28508184-28508421(-)$1	237	151	176	11.4087
ggggg[eeeeemmmmeeeeeggggg	chr5:137688299-137688597(+)$1	298	211	236	11.1827
####eeeee[ammmmaeeeee333e	chr17:29632020-29632243(+)$1	223	55	80	11.3882
c!!a[ffffffmmmmffffff]acc	chr7:6071032-6071277(-)$1	245	12	37	10.3045
beeeee!!cccmmmmccceeeee]b	chr11:120207732-120208063(+)$1	331	236	261	9.4291
c!!bb[eeeeemmmmeeeeebbccc	chr7:6071077-6071356(-)$1	279	239	264	10.0301
h[ccc[eeeeemmmmeeeee333cc	chr7:104752274-104752544(-)$1	270	128	153	11.2266
===========mmmm==========	chr1:155657981-155658195(-)$1	214	3	28	12.7735
ddd[eeeeeooooooeeeee22ddd	chr7:6075005-6075275(-)$1	270	223	248	7.8109
gggg[ffffffmmmmffffffgggg	chr17:29623014-29623268(+)$1	254	51	76	9.9013
c==========mmmm==========	chr21:38119981-38120194(+)$1	213	129	154	12.7374
!!eeeee[cccmmmmccc]eeeee2	chr19:2199725-2199994(+)$1	269	169	194	10.0866
$$$$$ffffffmmmmffffff333a	chr15:28508123-28508384(-)$1	261	43	68	9.6359
e!!dddd!!bbmmmmbb22dddd22	chr7:6075250-6075476(-)$1	226	19	44	8.5315
d[a[gggggggmmmmggggggga]d	chr17:29632338-29632613(+)$1	275	5	30	11.8123
dddiiiiiiiiillliiiiiiiii:	chr3:99567695-99567949(+)$1	254	212	237	8.4926
ccc[eeeeeooooooeeeee22ccc	chr7:6074940-6075205(-)$1	265	153	178	8.7053
$$$$gggggggmmmmggggggg333	chr18:2656154-2656423(+)$1	269	41	66	11.4751
===========mmmm==========	chr1:155658049-155658346(-)$1	297	154	179	12.7735
ddd[a[ccc[bblllbb]ccc]a22	chr7:104752960-104753191(-)$1	231	34	59	7.4893
####a[eeeeemmmmeeeee]abb2	chr6:170844171-170844435(-)$1	264	102	127	10.6141
gggggg[ddddmmmmdddd]ggggg	chr7:104752407-104752657(-)$1	250	67	92	10.1420

#otherMatches

#Seq PSSM
UGUGCUUCUGGUUUUUCAGAAGAGG	chr17:29632159-29632448(+)$1	289	184	209	11.8123
ACCACAAGACUCUGGGGUCUGUGCU	chr3:99567346-99567589(+)$1	243	200	225	8.7423
ccgcgcggcacccgagugcugcgcg	chr21:38119994-38120204(+)$1	210	116	141	12.7374
AAUAUUUGGGAUCCAUUUCAGAAUA	chr17:29632440-29632688(+)$1	248	171	196	8.2963
AUGUGUAGCUUGUGAGGGAUACGGU	chr7:104753296-104753543(-)$1	247	39	64	8.3929
CAUGCUGUACAGGUGUGUGAGGCGU	chr7:104752495-104752757(-)$1	262	167	192	10.1420
UUGGUUGUUUGGUGUUGUAGGCAAG	chr17:29632117-29632359(+)$1	242	182	207	8.0245
AGGCCCUUUUGGCUUGGAGGGCUUC	chrX:41193696-41193954(+)$1	258	221	246	10.6129
GGUGACAGUUCUCACGAUGUGUAGC	chr3:99549283-99549558(+)$1	275	10	35	8.8783
UCUUGCAGUCCAGAUGGUAAUGUAG	chr17:29623081-29623317(+)$1	236	104	129	9.9924
UGUGCUUCUGGUUUUUCAGAAGAGG	chr17:29632280-29632538(+)$1	258	63	88	11.8123
GAGGUGGUAGUGAUGGCUGCAAAAC	chr15:28508184-28508421(-)$1	237	151	176	11.4087
gggcaagcggcugcugcugcuguuc	chr5:137688299-137688597(+)$1	298	211	236	11.1827
AAAUCCUGGUGUACUCCUAGGUGAA	chr17:29632020-29632243(+)$1	223	55	80	11.3882
GCCUGACUUUUUUCCAGAAGUGACU	chr7:6071032-6071277(-)$1	245	12	37	10.3045
CUACUAUCACCGACAGGUUGGUAUG	chr11:120207732-120208063(+)$1	331	236	261	9.4291
CAUGAUGGCUUCAUAGAGUUUCGAG	chr7:6071077-6071356(-)$1	279	239	264	10.0301
AUAGCUGUUUUUGUUGGAGCUCUGU	chr7:104752274-104752544(-)$1	270	128	153	11.2266
UUGGGGGUGUCGCUAGGCGCCCUUA	chr1:155657981-155658195(-)$1	214	3	28	12.7735
GUUACACUGAAUUCACAGUGGGAAC	chr7:6075005-6075275(-)$1	270	223	248	7.8109
GCAGGCAGGCUUUCAAGCCUGUUGU	chr17:29623014-29623268(+)$1	254	51	76	9.9013
ccgcgcggcacccgagugcugcgcg	chr21:38119981-38120194(+)$1	213	129	154	12.7374
GAUUUCCUCUCAGAAGAGUGGAGGG	chr19:2199725-2199994(+)$1	269	169	194	10.0866
UAUUUAAAUGCAUUUGUAUUUUUUA	chr15:28508123-28508384(-)$1	261	43	68	9.6359
AAGAGACAGCACAGUUGACGUUUGC	chr7:6075250-6075476(-)$1	226	19	44	8.5315
UGUGCUUCUGGUUUUUCAGAAGAGG	chr17:29632338-29632613(+)$1	275	5	30	11.8123
CCCUCCUUGGAUUUCAUCCAGGGAA	chr3:99567695-99567949(+)$1	254	212	237	8.4926
GUUACACUGAAUUCACAGUGGGAAC	chr7:6074940-6075205(-)$1	265	153	178	8.7053
GGGACCGGCCUCUGCAGGUCGGGGA	chr18:2656154-2656423(+)$1	269	41	66	11.4751
UUGGGGGUGUCGCUAGGCGCCCUUA	chr1:155658049-155658346(-)$1	297	154	179	12.7735
CAGAGUGUUGCUGAUGGGAAUUCGG	chr7:104752960-104753191(-)$1	231	34	59	7.4893
AAACUGUUUCCUUAAGGAAGGACUG	chr6:170844171-170844435(-)$1	264	102	127	10.6141
CAUGCUGUACAGGUGUGUGAGGCGU	chr7:104752407-104752657(-)$1	250	67	92	10.1420

#DB
(.(.(((((((....)))))))).)	chr17:29632159-29632448(+)$1	1	184	209	11.8123
..((((.((((....))))))))))	chr3:99567346-99567589(+)$1	1	200	225	8.7423
)((((((((((....))))))))))	chr21:38119994-38120204(+)$1	1	116	141	12.7374
(((((((.(((.....))).)))))	chr17:29632440-29632688(+)$1	1	171	196	8.2963
((.((((.(((....))).))))))	chr7:104753296-104753543(-)$1	1	39	64	8.3929
((((((.((((....)))).)))))	chr7:104752495-104752757(-)$1	1	167	192	10.1420
(((((((((((......))))))).	chr17:29632117-29632359(+)$1	1	182	207	8.0245
(((((((((......))))))))))	chrX:41193696-41193954(+)$1	1	221	246	10.6129
(((.(((..((....))..))).))	chr3:99549283-99549558(+)$1	1	10	35	8.8783
(((.(((..((....))...)))))	chr17:29623081-29623317(+)$1	1	104	129	9.9924
(.(.(((((((....)))))))).)	chr17:29632280-29632538(+)$1	1	63	88	11.8123
(.(((.(((((....)))))...))	chr15:28508184-28508421(-)$1	1	151	176	11.4087
(((((.(((((....))))))))))	chr5:137688299-137688597(+)$1	1	211	236	11.1827
....(((((.(....))))))...)	chr17:29632020-29632243(+)$1	1	55	80	11.3882
(..(.((((((....)))))).)))	chr7:6071032-6071277(-)$1	1	12	37	10.3045
((((((..(((....)))))))).)	chr11:120207732-120208063(+)$1	1	236	261	9.4291
(..((.(((((....))))))))))	chr7:6071077-6071356(-)$1	1	239	264	10.0301
(.(((.(((((....)))))...))	chr7:104752274-104752544(-)$1	1	128	153	11.2266
(((((((((((....))))))))))	chr1:155657981-155658195(-)$1	1	3	28	12.7735
(((.(((((......)))))..)))	chr7:6075005-6075275(-)$1	1	223	248	7.8109
((((.((((((....))))))))))	chr17:29623014-29623268(+)$1	1	51	76	9.9013
)((((((((((....))))))))))	chr21:38119981-38120194(+)$1	1	129	154	12.7374
..(((((.(((....))).))))).	chr19:2199725-2199994(+)$1	1	169	194	10.0866
.....((((((....))))))...)	chr15:28508123-28508384(-)$1	1	43	68	9.6359
(..((((..((....))..))))..	chr7:6075250-6075476(-)$1	1	19	44	8.5315
(.(.(((((((....)))))))).)	chr17:29632338-29632613(+)$1	1	5	30	11.8123
)))(((((((((...))))))))).	chr3:99567695-99567949(+)$1	1	212	237	8.4926
(((.(((((......)))))..)))	chr7:6074940-6075205(-)$1	1	153	178	8.7053
....(((((((....)))))))...	chr18:2656154-2656423(+)$1	1	41	66	11.4751
(((((((((((....))))))))))	chr1:155658049-155658346(-)$1	1	154	179	12.7735
(((.(.(((.((...)).))).)..	chr7:104752960-104753191(-)$1	1	34	59	7.4893
....(.(((((....))))).))).	chr6:170844171-170844435(-)$1	1	102	127	10.6141
((((((.((((....)))).)))))	chr7:104752407-104752657(-)$1	1	67	92	10.1420

#PSSM
d : 0.18	c : 0.18	g : 0.12	= : 0.09	b : 0.06	f : 0.06	# : 0.06	$ : 0.06	" : 0.03	i : 0.03	a : 0.03	h : 0.03	! : 0.03	e : 0.03	
[ : 0.15	= : 0.15	g : 0.12	! : 0.12	d : 0.09	f : 0.06	c : 0.06	# : 0.06	$ : 0.06	" : 0.03	i : 0.03	b : 0.03	e : 0.03	
= : 0.15	d : 0.12	g : 0.12	c : 0.12	a : 0.09	! : 0.09	f : 0.06	# : 0.06	e : 0.06	$ : 0.06	i : 0.03	[ : 0.03	
[ : 0.24	= : 0.15	g : 0.12	d : 0.09	i : 0.06	c : 0.06	# : 0.06	e : 0.06	$ : 0.06	f : 0.03	a : 0.03	b : 0.03	
g : 0.24	= : 0.15	e : 0.15	c : 0.12	d : 0.09	i : 0.06	[ : 0.06	a : 0.06	b : 0.03	$ : 0.03	
g : 0.21	[ : 0.18	= : 0.15	e : 0.15	d : 0.09	f : 0.09	i : 0.06	c : 0.06	
e : 0.27	g : 0.15	= : 0.15	[ : 0.09	c : 0.09	f : 0.09	i : 0.06	d : 0.06	! : 0.03	
e : 0.24	g : 0.15	= : 0.15	! : 0.12	d : 0.09	[ : 0.09	f : 0.09	i : 0.03	c : 0.03	
e : 0.24	g : 0.15	= : 0.15	c : 0.15	d : 0.09	! : 0.09	f : 0.09	i : 0.03	
g : 0.15	e : 0.15	= : 0.12	c : 0.12	d : 0.09	o : 0.09	b : 0.09	f : 0.09	[ : 0.06	i : 0.03	
g : 0.15	e : 0.15	= : 0.12	c : 0.12	b : 0.12	d : 0.09	o : 0.09	f : 0.09	a : 0.03	i : 0.03	
m : 0.78	o : 0.12	n : 0.03	i : 0.03	b : 0.03	
m : 0.78	o : 0.12	l : 0.06	n : 0.03	
m : 0.78	o : 0.12	l : 0.06	n : 0.03	
m : 0.78	o : 0.12	l : 0.06	n : 0.03	
e : 0.21	= : 0.15	g : 0.12	b : 0.12	d : 0.09	c : 0.09	f : 0.09	n : 0.03	o : 0.03	a : 0.03	i : 0.03	
e : 0.24	= : 0.15	g : 0.12	c : 0.12	b : 0.12	d : 0.09	f : 0.09	o : 0.03	i : 0.03	
e : 0.24	g : 0.15	= : 0.15	c : 0.12	d : 0.09	f : 0.09	2 : 0.06	3 : 0.03	i : 0.03	] : 0.03	
e : 0.27	g : 0.15	= : 0.15	d : 0.09	f : 0.09	c : 0.06	] : 0.06	2 : 0.06	3 : 0.03	i : 0.03	
e : 0.30	g : 0.15	= : 0.15	d : 0.09	] : 0.09	f : 0.09	c : 0.06	3 : 0.03	i : 0.03	
g : 0.24	= : 0.15	d : 0.09	c : 0.09	e : 0.09	f : 0.09	i : 0.06	3 : 0.06	2 : 0.06	b : 0.03	] : 0.03	
g : 0.27	= : 0.15	3 : 0.12	d : 0.09	i : 0.06	c : 0.06	] : 0.06	e : 0.06	2 : 0.06	b : 0.03	a : 0.03	
a : 0.15	= : 0.15	g : 0.15	3 : 0.15	d : 0.12	c : 0.09	i : 0.06	e : 0.06	] : 0.03	b : 0.03	
g : 0.18	c : 0.18	= : 0.15	] : 0.12	3 : 0.09	i : 0.06	b : 0.06	2 : 0.06	f : 0.03	d : 0.03	e : 0.03	
c : 0.18	g : 0.15	= : 0.15	d : 0.12	2 : 0.12	b : 0.06	i : 0.03	8 : 0.03	f : 0.03	e : 0.03	a : 0.03	: : 0.03	3 : 0.03	

#score	337.3962595264848
#seq	33
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_UTR_m2_run1.txt

#BEAR
dd=============mmmm=============ff	chr6:75963602-75963850(-)$1	248	116	150	16.2585
eee####ffffff[ammmma]ffffff4444eee	chr11:118622083-118622318(-)$1	235	197	231	11.3957
====!!bb[bb[cccmmmmccc]bb]bb22====	chr17:37560925-37561218(-)$1	293	145	179	13.4628
hggggggg!!a[cccmmmmccc]a22ggggggg6	chr17:55761355-55761609(+)$1	254	124	158	14.7782
eeee"""eeeee[bbmmmmbb22eeeee4444ee	chr2:10923687-10923915(-)$1	228	61	95	11.3227
dd"""eeeee!!cccmmmmccc22eeeeedddd5	chr18:212192-212458(+)$1	266	45	79	11.7067
ee!!cccccc!!cccmmmmccc22ccc]ccc]ee	chr3:182638294-182638551(+)$1	257	190	224	14.2169
ggggggg####ddddoooooodddd333gggggg	chr14:67852598-67852854(+)$1	256	31	65	12.2798
d!!ccc$$$$$cccooooooccc4444ccc333d	chr17:7215393-7215605(+)$1	212	84	118	12.1334
e[ggggggg[ddddnnnnndddd333ggggggg2	chr16:19090798-19091101(+)$1	303	197	231	11.7294
ee$$$$$ccc[ddddmmmmddddccc333eeeee	chr11:95564990-95565273(+)$1	283	10	44	12.1485
e"""ggggggg[cccmmmmccc]gggggggeeee	chr14:77806841-77807085(-)$1	244	32	66	14.9549
g"""eeeee"""cccmmmmccc>>>>>>>>>>>>	chr7:24839259-24839537(-)$1	278	38	72	11.7241
ff============oooooo============::	chr17:75494840-75495084(+)$1	244	79	113	12.9114
e[eeeee[a!!bbccclllccc]bb333a]eeee	chr22:22274155-22274412(-)$1	257	108	142	11.2846
fff!!a[ccc[bb[ammmma]bb]ccc]a]ffff	chr4:6644127-6644449(+)$1	322	62	96	11.8865
========ddddcccmmmmccc333dddd]====	chr1:10240313-10240593(+)$1	280	46	80	15.2484
c[ccc[eeeee[cccmmmmccc]eeeee]ccccc	chr17:46137469-46137758(+)$1	289	105	139	12.9545
=========ffffffmmmmffffff4444=====	chr12:112943887-112944134(+)$1	247	94	128	14.3305
d[bb"""ccc[ddddmmmmddddccc]bb]dddd	chr17:38435232-38435517(+)$1	285	64	98	11.4766
!!ggggggg!!acccmmmmccc]a4444gggggg	chr1:15987730-15987997(+)$1	267	227	261	15.9355
========cccddddnnnnndddd]ccc]=====	chr1:27734356-27734601(-)$1	245	157	191	12.1542
h===========rrrrrrrrr===========22	chr15:52203267-52203507(+)$1	240	191	225	12.2071
==!!ccc[ccc[cccnnnnnccc]ccc]ccc333	chr7:92239998-92240273(-)$1	275	63	97	12.2083
dddd####gggggggmmmmggggggg]ddddfff	chr4:57260030-57260271(-)$1	241	1	35	11.5221
ggggg"""eeeee[ammmmaeeeeeggggggg::	chr9:34087130-34087390(-)$1	260	192	226	11.3470
iiiiii!!eeeeebbmmmmbb4444eeeeeiiii	chr19:11032875-11033137(+)$1	262	114	148	13.5872
[==============mmmm==============e	chr15:58007715-58007979(+)$1	264	50	84	17.1660
========"""ddddmmmmdddd4444=======	chr3:194123619-194123859(-)$1	240	177	211	16.4659
=========####bbmmmmbb4444=========	chr4:39780310-39780563(+)$1	253	208	242	16.6213
"""ggggggg!!ddddllldddd4444ggggggg	chr17:37689846-37690101(+)$1	255	149	183	12.9958
==========[cccooooooccc==========:	chr17:44833824-44834077(+)$1	253	6	40	14.6733
===============mmmm===============	chr22:38881367-38881588(-)$1	221	175	209	17.3766
ddd!!ggggggg[bbmmmmbb22ggggggg4444	chr1:228369425-228369702(+)$1	277	173	207	13.0188
fffff"""gggggggmmmmgggggggffffff]c	chr12:112944328-112944605(+)$1	277	177	211	12.0478
=========="""bbmmmmbb333==========	chr1:87574402-87574655(+)$1	253	11	45	16.9753
ggg[bb[iiiiiiiiillliiiiiiiii]bb333	chr17:79477366-79477581(-)$1	215	124	158	12.3712
===========[cccmmmmccc]===========	chr20:36719054-36719334(+)$1	280	6	40	17.9168
=============eeeee]ccca333ggggggg]	chr8:21862959-21863216(+)$1	257	208	242	11.7179
cggggggg!!eeeeemmmmeeeee22ggggggg:	chr19:41770850-41771105(+)$1	255	64	98	12.1568
iiiiiiiieeeeebbmmmmbb]eeeee22iiiii	chr3:160219276-160219518(-)$1	242	125	159	12.8818
ee[ccc[a[bb[cccmmmmcccbba]ccceeeee	chr11:120356798-120357112(+)$1	314	140	174	12.6482
[a!!ggggggg[cccmmmmccc333ggggggg22	chr10:60158085-60158347(+)$1	262	90	124	15.9279
geeeee[ccceeeeemmmmeeeee333ccc]eee	chr10:105787273-105787515(+)$1	242	97	131	11.9221
eeeddddccc[ddddmmmmdddd]ccc4444ddd	chr16:58195757-58196025(-)$1	268	218	252	11.2237
ccc[ccc"""cccooooooccc]ccc]ccc]iii	chr12:4411888-4412161(+)$1	273	19	53	12.2769
((ccc[iiiiiiiiimmmmiiiiiiiii]ccc22	chr6:7288887-7289135(-)$1	248	184	218	12.6650
3===========cccmmmmccc:==========h	chrX:70280375-70280718(-)$1	343	124	158	16.1088
ebb[ggggggg[ccclllccc333ggggggg22b	chr15:89743928-89744156(+)$1	228	166	200	12.4901
c!!ggggggg[bbbbmmmmbb]bbgggggggccc	chr16:74655607-74655863(-)$1	256	189	223	12.7488
[ggggggg"""ddddmmmmdddd4444ggggggg	chr1:35649230-35649481(-)$1	251	88	122	14.7312

#otherMatches

#Seq PSSM
CAUGGGGGGAGGGAAGACAUUUCUUUUUCUUAUA	chr6:75963602-75963850(-)$1	248	116	150	16.2585
AUGCAACUGCAGUUCAUCCGCACUGUAAAUACAU	chr11:118622083-118622318(-)$1	235	197	231	11.3957
GAGGUUGGUGACUCUUGAAAGAUUUUCUUUCUUC	chr17:37560925-37561218(-)$1	293	145	179	13.4628
CGGAGGCUGAGAGACAAAAGUUCCAGAGCCUCCC	chr17:55761355-55761609(+)$1	254	124	158	14.7782
CUUUAGAUGGUGCCACCUAUGCCCACCACAACAG	chr2:10923687-10923915(-)$1	228	61	95	11.3227
UGGAUGCUGAAUGCAGUGAUGUUAUCAGUCAGAU	chr18:212192-212458(+)$1	266	45	79	11.7067
CUUUAAGUGACUCAGCACCCUGCCUCAGCUUCAG	chr3:182638294-182638551(+)$1	257	190	224	14.2169
AGCCAUUCUACUUUUACACCAAGAACAAAAUGGC	chr14:67852598-67852854(+)$1	256	31	65	12.2798
UUCUGGCAAAUGGUCCUUGUGCCCUCCCCACUCA	chr17:7215393-7215605(+)$1	212	84	118	12.1334
UAUAAGAUGCUUCUGGGAAAGAACCACAUUUUAG	chr16:19090798-19091101(+)$1	303	197	231	11.7294
UUUUUAAUCUGUUAAUUUUUUAAAGACCCAAGCA	chr11:95564990-95565273(+)$1	283	10	44	12.1485
UUUAGGUGAUAAUGAAGCUUCACUAUUGCUGCUG	chr14:77806841-77807085(-)$1	244	32	66	14.9549
UCCAAAGGUUAGGGAAGAUUCCAAUUAAAUUUAU	chr7:24839259-24839537(-)$1	278	38	72	11.7241
CCGCGGCCUCCCCGAGGUUGUGGGGAGGCUGCAC	chr17:75494840-75495084(+)$1	244	79	113	12.9114
ACGGGGUGCAGACGGCAGGGCCAGUAUGGGGCCC	chr22:22274155-22274412(-)$1	257	108	142	11.2846
GUUGAUGUAAUACCCUGAUGCGUUUUAGAGGACU	chr4:6644127-6644449(+)$1	322	62	96	11.8865
UUUUAAUCCAAUAUCCGUUGAUUUGAUUGUGAUU	chr1:10240313-10240593(+)$1	280	46	80	15.2484
GUGGGGAGGGACGGUGUUAACUCUUUCUGCUCCU	chr17:46137469-46137758(+)$1	289	105	139	12.9545
UUUUUUUUUUCCUCAUUGUUGGGGAUGAUGAGAA	chr12:112943887-112944134(+)$1	247	94	128	14.3305
AAGAAAAGUCACUUUUUGUGGAGGGCAUCAUUCA	chr17:38435232-38435517(+)$1	285	64	98	11.4766
UAACAGACAGGCCUGAAACCAGAGAAAAUGUCUG	chr1:15987730-15987997(+)$1	267	227	261	15.9355
CUUUCCUUCAAGUGCCUGUUGCAUAUUGAAAGGA	chr1:27734356-27734601(-)$1	245	157	191	12.1542
UAUGGGUAAUAUCUUUUUCAUAUAUUAUUUAUCA	chr15:52203267-52203507(+)$1	240	191	225	12.2071
CUAAGAACGUUCAUUGAAAAAAUAAAUUUUUAAA	chr7:92239998-92240273(-)$1	275	63	97	12.2083
AGAAUUUUUAAACAUAAAAGUGUUUGUUUCUGUU	chr4:57260030-57260271(-)$1	241	1	35	11.5221
UGGGACUUGGGGUUGAAGCCACCCCUCCUACUCU	chr9:34087130-34087390(-)$1	260	192	226	11.3470
GAGGGGUGGCCCCGCCGAGGCUUCAGGGGCCCCC	chr19:11032875-11033137(+)$1	262	114	148	13.5872
GUUUGAUAAGGAAAGCAUUUUUUUUUUGUUAAAA	chr15:58007715-58007979(+)$1	264	50	84	17.1660
UAAUGUAUUAAAAUUUGGUAAUUAUGUGUACAUU	chr3:194123619-194123859(-)$1	240	177	211	16.4659
UUAGGAUGGGUAGCUGAAAAGACCACCAUUUUAA	chr4:39780310-39780563(+)$1	253	208	242	16.6213
CUUUUAAAAUGAAAACAAAGUUUGGUAGUUUUGA	chr17:37689846-37690101(+)$1	255	149	183	12.9958
GUUGGUUGUGACUUCCCCUUAAGUAUAACUAAUU	chr17:44833824-44834077(+)$1	253	6	40	14.6733
AGUUGGAACAGGUUUCCUCGGGCCUGUUUUGACU	chr22:38881367-38881588(-)$1	221	175	209	17.3766
GGCAGUGCUCCACGUGCCAACCCUGGGGCAGGGA	chr1:228369425-228369702(+)$1	277	173	207	13.0188
ccugcagguggccacucauguggucagcaggucg	chr12:112944328-112944605(+)$1	277	177	211	12.0478
GAUGGUGAUGAACUCUUUAGAACGCAUUACUGUU	chr1:87574402-87574655(+)$1	253	11	45	16.9753
CGUGUGGCUUGGUCACUUCGUGGCUAAGGUAAGA	chr17:79477366-79477581(-)$1	215	124	158	12.3712
AUCCCUGGUGGGUGCGAAGGCAGUUGUUAGGGAU	chr20:36719054-36719334(+)$1	280	6	40	17.9168
AAUGUAUAUUUUUUCGUAUUGCCCUGUCCUCACC	chr8:21862959-21863216(+)$1	257	208	242	11.7179
GGCCUCUGGGUUUCGGAGGUGAGGGACGGGGGUG	chr19:41770850-41771105(+)$1	255	64	98	12.1568
GGAGAGCCAGGUUCAUCUUUGAAAUCUAGGGCUC	chr3:160219276-160219518(-)$1	242	125	159	12.8818
UGCACUGAUGGUGCCAAAGGGCCCUGAGUCAAAA	chr11:120356798-120357112(+)$1	314	140	174	12.6482
GGAAGGAGGGUUGUGUAUUUAUUUUACUUUCUGA	chr10:60158085-60158347(+)$1	262	90	124	15.9279
GAGGGAUUGGGAAGGAACGUCUUCAUACCACUUU	chr10:105787273-105787515(+)$1	242	97	131	11.9221
CCUUGUCCUGGGGUUUUGUAACUGCAGCUUUGAC	chr16:58195757-58196025(-)$1	268	218	252	11.2237
CUUCUCUACAGAGGUGAAAUUCCAGAUGAGUCAG	chr12:4411888-4412161(+)$1	273	19	53	12.2769
AAAUUAAGUUUGGCAUUAUUGUCAGACUGGAUGG	chr6:7288887-7289135(-)$1	248	184	218	12.6650
GCAUUUACCCAUGCCAGAAGGCUAACCUGGGGGG	chrX:70280375-70280718(-)$1	343	124	158	16.1088
cugagguuaggaguucaagaccagccuggccaac	chr15:89743928-89744156(+)$1	228	166	200	12.4901
gguugcagugagucgagaucgcgccacugcacuc	chr16:74655607-74655863(-)$1	256	189	223	12.7488
GGUGAAAGUGGGUUUGAUUAAAUGGAUCUUUUAU	chr1:35649230-35649481(-)$1	251	88	122	14.7312

#DB
))(((((((((((((....)))))))))))))((	chr6:75963602-75963850(-)$1	1	116	150	16.2585
(((....((((((.(....).))))))....)))	chr11:118622083-118622318(-)$1	1	197	231	11.3957
((((..((.((.(((....))).)).))..))))	chr17:37560925-37561218(-)$1	1	145	179	13.4628
((((((((..(.(((....))).)..))))))).	chr17:55761355-55761609(+)$1	1	124	158	14.7782
((((...(((((.((....))..)))))....))	chr2:10923687-10923915(-)$1	1	61	95	11.3227
((...(((((..(((....)))..))))))))).	chr18:212192-212458(+)$1	1	45	79	11.7067
((..((((((..(((....)))..))).))).))	chr3:182638294-182638551(+)$1	1	190	224	14.2169
(((((((....((((......))))...))))))	chr14:67852598-67852854(+)$1	1	31	65	12.2798
(..(((.....(((......)))....)))...)	chr17:7215393-7215605(+)$1	1	84	118	12.1334
(.(((((((.((((.....))))...))))))).	chr16:19090798-19091101(+)$1	1	197	231	11.7294
((.....(((.((((....)))))))...)))))	chr11:95564990-95565273(+)$1	1	10	44	12.1485
(...(((((((.(((....))).)))))))))))	chr14:77806841-77807085(-)$1	1	32	66	14.9549
(...(((((...(((....)))............	chr7:24839259-24839537(-)$1	1	38	72	11.7241
))((((((((((((......))))))))))))..	chr17:75494840-75495084(+)$1	1	79	113	12.9114
(.(((((.(..(((((...))).))...).))))	chr22:22274155-22274412(-)$1	1	108	142	11.2846
(((..(.(((.((.(....).)).))).).))))	chr4:6644127-6644449(+)$1	1	62	96	11.8865
(((((((((((((((....)))...)))).))))	chr1:10240313-10240593(+)$1	1	46	80	15.2484
(.(((.(((((.(((....))).))))).)))))	chr17:46137469-46137758(+)$1	1	105	139	12.9545
(((((((((((((((....))))))....)))))	chr12:112943887-112944134(+)$1	1	94	128	14.3305
(.((...(((.((((....))))))).)).))))	chr17:38435232-38435517(+)$1	1	64	98	11.4766
..(((((((..((((....))).)....))))))	chr1:15987730-15987997(+)$1	1	227	261	15.9355
(((((((((((((((.....)))).))).)))))	chr1:27734356-27734601(-)$1	1	157	191	12.1542
((((((((((((.........)))))))))))..	chr15:52203267-52203507(+)$1	1	191	225	12.2071
((..(((.(((.(((.....))).))).)))...	chr7:92239998-92240273(-)$1	1	63	97	12.2083
((((....(((((((....))))))).))))(((	chr4:57260030-57260271(-)$1	1	1	35	11.5221
(((((...(((((.(....)))))))))))))..	chr9:34087130-34087390(-)$1	1	192	226	11.3470
((((((..(((((((....))....)))))))))	chr19:11032875-11033137(+)$1	1	114	148	13.5872
.((((((((((((((....)))))))))))))))	chr15:58007715-58007979(+)$1	1	50	84	17.1660
((((((((...((((....))))....)))))))	chr3:194123619-194123859(-)$1	1	177	211	16.4659
(((((((((....((....))....)))))))))	chr4:39780310-39780563(+)$1	1	208	242	16.6213
...(((((((..((((...))))....)))))))	chr17:37689846-37690101(+)$1	1	149	183	12.9958
((((((((((.(((......))))))))))))).	chr17:44833824-44834077(+)$1	1	6	40	14.6733
(((((((((((((((....)))))))))))))))	chr22:38881367-38881588(-)$1	1	175	209	17.3766
(((..(((((((.((....))..)))))))....	chr1:228369425-228369702(+)$1	1	173	207	13.0188
(((((...(((((((....))))))))))))).)	chr12:112944328-112944605(+)$1	1	177	211	12.0478
((((((((((...((....))...))))))))))	chr1:87574402-87574655(+)$1	1	11	45	16.9753
(((.((.(((((((((...))))))))).))...	chr17:79477366-79477581(-)$1	1	124	158	12.3712
(((((((((((.(((....))).)))))))))))	chr20:36719054-36719334(+)$1	1	6	40	17.9168
)))))))))))))))))).))))...))))))).	chr8:21862959-21863216(+)$1	1	208	242	11.7179
)(((((((..(((((....)))))..))))))).	chr19:41770850-41771105(+)$1	1	64	98	12.1568
(((((((((((((((....)).)))))..)))))	chr3:160219276-160219518(-)$1	1	125	159	12.8818
((.(((.(.((.(((....)))))).))))))))	chr11:120356798-120357112(+)$1	1	140	174	12.6482
.(..(((((((.(((....)))...)))))))..	chr10:60158085-60158347(+)$1	1	90	124	15.9279
((((((.((((((((....)))))...))).)))	chr10:105787273-105787515(+)$1	1	97	131	11.9221
((((((((((.((((....)))).)))....)))	chr16:58195757-58196025(-)$1	1	218	252	11.2237
(((.(((...(((......))).))).))).)))	chr12:4411888-4412161(+)$1	1	19	53	12.2769
..(((.(((((((((....))))))))).)))..	chr6:7288887-7289135(-)$1	1	184	218	12.6650
.)))))))))))(((....))).(((((((((((	chrX:70280375-70280718(-)$1	1	124	158	16.1088
(((.(((((((.(((...)))...)))))))..)	chr15:89743928-89744156(+)$1	1	166	200	12.4901
(..(((((((.((((....)).))))))))))))	chr16:74655607-74655863(-)$1	1	189	223	12.7488
.(((((((...((((....))))....)))))))	chr1:35649230-35649481(-)$1	1	88	122	14.7312

#PSSM
= : 0.23	e : 0.19	d : 0.11	g : 0.09	c : 0.07	f : 0.05	[ : 0.05	h : 0.03	i : 0.03	! : 0.01	" : 0.01	( : 0.01	3 : 0.01	
= : 0.29	e : 0.13	g : 0.11	d : 0.07	[ : 0.07	! : 0.05	" : 0.05	f : 0.05	i : 0.03	a : 0.01	c : 0.01	( : 0.01	b : 0.01	
= : 0.31	g : 0.15	e : 0.09	! : 0.09	" : 0.07	c : 0.05	f : 0.03	b : 0.03	d : 0.03	i : 0.03	$ : 0.01	[ : 0.01	
= : 0.31	g : 0.17	! : 0.09	c : 0.07	e : 0.05	" : 0.05	[ : 0.05	d : 0.03	i : 0.03	# : 0.01	$ : 0.01	b : 0.01	f : 0.01	
= : 0.29	g : 0.23	c : 0.13	! : 0.05	" : 0.05	e : 0.05	# : 0.03	i : 0.03	$ : 0.01	f : 0.01	b : 0.01	d : 0.01	
= : 0.29	g : 0.23	c : 0.09	" : 0.07	e : 0.07	# : 0.03	[ : 0.03	i : 0.03	! : 0.01	$ : 0.01	a : 0.01	b : 0.01	d : 0.01	
= : 0.29	g : 0.23	" : 0.07	e : 0.07	[ : 0.07	c : 0.05	# : 0.03	$ : 0.03	i : 0.03	b : 0.01	! : 0.01	d : 0.01	
= : 0.29	g : 0.21	c : 0.11	e : 0.07	" : 0.05	i : 0.05	# : 0.03	[ : 0.03	f : 0.01	b : 0.01	$ : 0.01	! : 0.01	a : 0.01	
= : 0.23	g : 0.19	c : 0.15	e : 0.13	" : 0.05	[ : 0.03	! : 0.03	i : 0.03	f : 0.01	# : 0.01	$ : 0.01	a : 0.01	d : 0.01	
= : 0.19	c : 0.15	g : 0.15	e : 0.11	! : 0.07	" : 0.07	f : 0.03	b : 0.03	# : 0.03	i : 0.03	$ : 0.01	[ : 0.01	d : 0.01	
= : 0.15	e : 0.13	[ : 0.11	g : 0.11	! : 0.09	" : 0.07	c : 0.05	f : 0.03	b : 0.03	# : 0.03	d : 0.03	i : 0.03	a : 0.01	$ : 0.01	
[ : 0.17	d : 0.17	= : 0.13	e : 0.11	! : 0.05	c : 0.05	b : 0.05	g : 0.05	f : 0.03	" : 0.03	i : 0.03	a : 0.01	# : 0.01	
c : 0.35	d : 0.17	= : 0.09	e : 0.09	b : 0.05	f : 0.03	[ : 0.03	g : 0.03	i : 0.03	r : 0.01	# : 0.01	" : 0.01	
c : 0.35	d : 0.17	b : 0.13	= : 0.07	[ : 0.05	e : 0.05	g : 0.03	i : 0.03	f : 0.01	r : 0.01	o : 0.01	
c : 0.31	d : 0.15	b : 0.13	o : 0.07	= : 0.05	a : 0.05	e : 0.05	g : 0.03	i : 0.03	n : 0.01	f : 0.01	r : 0.01	
m : 0.72	o : 0.09	n : 0.05	c : 0.01	r : 0.01	d : 0.01	i : 0.01	e : 0.01	l : 0.01	
m : 0.72	o : 0.09	l : 0.07	n : 0.05	r : 0.01	e : 0.01	
m : 0.72	o : 0.09	l : 0.07	n : 0.05	r : 0.01	e : 0.01	
m : 0.72	o : 0.09	n : 0.05	l : 0.05	r : 0.01	] : 0.01	c : 0.01	
c : 0.33	b : 0.13	d : 0.13	o : 0.07	= : 0.05	a : 0.05	n : 0.03	g : 0.03	i : 0.03	e : 0.03	f : 0.01	r : 0.01	
c : 0.39	d : 0.15	b : 0.13	= : 0.07	e : 0.05	] : 0.03	g : 0.03	i : 0.03	o : 0.01	f : 0.01	r : 0.01	
c : 0.37	d : 0.17	= : 0.09	e : 0.05	f : 0.03	2 : 0.03	g : 0.03	4 : 0.03	3 : 0.03	i : 0.03	] : 0.03	b : 0.01	
d : 0.17	] : 0.15	= : 0.09	2 : 0.07	3 : 0.07	e : 0.07	c : 0.05	b : 0.05	f : 0.03	g : 0.03	4 : 0.03	i : 0.03	> : 0.01	a : 0.01	: : 0.01	
= : 0.15	e : 0.11	4 : 0.11	3 : 0.11	b : 0.07	g : 0.07	c : 0.05	] : 0.05	f : 0.03	a : 0.03	2 : 0.03	d : 0.03	i : 0.03	> : 0.01	
= : 0.17	c : 0.13	4 : 0.13	g : 0.11	e : 0.09	3 : 0.09	f : 0.03	b : 0.03	2 : 0.03	i : 0.03	d : 0.01	> : 0.01	] : 0.01	a : 0.01	
= : 0.19	c : 0.15	g : 0.15	4 : 0.11	e : 0.09	3 : 0.09	] : 0.03	2 : 0.03	i : 0.03	f : 0.01	> : 0.01	d : 0.01	
= : 0.19	g : 0.19	c : 0.11	4 : 0.11	e : 0.09	3 : 0.07	] : 0.05	f : 0.03	i : 0.03	b : 0.01	> : 0.01	d : 0.01	
g : 0.23	= : 0.21	c : 0.09	4 : 0.07	e : 0.07	] : 0.05	3 : 0.05	b : 0.03	d : 0.03	i : 0.03	> : 0.01	f : 0.01	2 : 0.01	
g : 0.27	= : 0.21	c : 0.11	4 : 0.07	] : 0.07	2 : 0.03	e : 0.03	a : 0.03	d : 0.03	3 : 0.01	> : 0.01	b : 0.01	f : 0.01	
g : 0.27	= : 0.25	c : 0.13	] : 0.07	4 : 0.05	e : 0.05	d : 0.03	2 : 0.01	> : 0.01	f : 0.01	b : 0.01	i : 0.01	
= : 0.29	g : 0.23	4 : 0.07	c : 0.07	e : 0.07	d : 0.05	f : 0.03	i : 0.03	] : 0.03	3 : 0.01	> : 0.01	b : 0.01	
= : 0.29	g : 0.19	e : 0.11	d : 0.05	3 : 0.05	f : 0.05	c : 0.05	i : 0.05	4 : 0.03	] : 0.01	> : 0.01	2 : 0.01	
= : 0.23	e : 0.15	g : 0.15	2 : 0.07	f : 0.05	d : 0.05	3 : 0.05	i : 0.05	: : 0.03	c : 0.03	> : 0.01	4 : 0.01	] : 0.01	
e : 0.17	= : 0.17	g : 0.07	2 : 0.07	: : 0.07	f : 0.05	d : 0.05	c : 0.05	i : 0.05	3 : 0.03	6 : 0.01	5 : 0.01	> : 0.01	4 : 0.01	] : 0.01	h : 0.01	b : 0.01	

#score	684.2958179737298
#seq	51
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_transcript_m3_run2.txt

#BEAR
###eeeee[a[bboooooobb]a22eeeee55	chr16:1425204-1425464(-)$1	260	23	55	12.6242
c[eeeee[a[cccooooooccc]a]eeeee]c	chr21:46858226-46858497(+)$1	271	175	207	14.7240
eeeeeccceeeeeooooooeeeee]ccc333e	chr8:145150558-145150831(+)$1	273	117	149	13.9229
ggg[bb!!bbabboooooobb]a]bb22bbgg	chr2:127429328-127429585(+)$1	257	175	207	12.4186
cbb[a[gggggggooooooggggggg22a]bb	chr7:104753046-104753347(-)$1	301	40	72	13.2306
eee!!hhhhhhhhoooooohhhhhhhh22eee	chr19:44284332-44284626(-)$1	294	219	251	11.8951
ggggg!!ffffffooooooffffff333gggg	chr2:97559957-97560192(-)$1	235	165	197	13.5971
[a[dddd[eeeeeooooooeeeeedddd]a]b	chr8:87354871-87355164(+)$1	293	10	42	13.0194
eeeee"""a[ddddnnnnndddd]a333eeee	chr9:126029739-126030001(-)$1	262	149	181	11.2967
ee[ffffff[cccoooooocccffffff]eee	chr12:123994623-123994899(-)$1	276	212	244	13.1220
[dddd[bb[ddddoooooodddd]bb]dddd]	chr14:105625733-105626043(-)$1	310	21	53	14.0323
eee[ggggggg[aooooooa]ggggggg]eee	chr13:115000297-115000572(+)$1	275	94	126	14.3568
[dddd[bb[bb[aooooooa]bb22bb]dddd	chr4:74123744-74124030(-)$1	286	195	227	12.6942
cca[dddd!!cccoooooocccdddd]a]ccc	chr19:907385-907676(-)$1	291	110	142	14.6164
ggggggg[dddd[aooooooadddd]gggggg	chr19:518682-518984(+)$1	302	205	237	13.2697
[dddd"""cccbboooooobb333ccc22ddd	chr16:1749167-1749436(+)$1	269	153	185	14.0885
ggggggg[eeeeeooooooeeeee]ggggggg	chr14:23777729-23777971(+)$1	242	98	130	14.0992
""bb!!eeeee[aooooooa]eeeee]bb333	chr20:46130701-46130954(+)$1	253	31	63	13.4553
c[a!!bb!!ddddoooooodddd22bb22acc	chr21:46903557-46903878(+)$1	321	204	236	14.9234
b!!ccc!!ddddoooooodddd333ccc]bb:	chr16:28507236-28507556(+)$1	320	1	33	12.5392
dd[a"""ccc[bboooooobb22ccc22addd	chr6:30688718-30688952(+)$1	234	107	139	13.1147
"""bbffffff[aooooooaffffff]bb333	chr11:2400586-2400864(+)$1	278	159	191	12.6130
c!!ddddbb!!cccooooooccc]bb]dddd2	chr16:15238781-15239059(-)$1	278	168	200	12.2941
===========rrrrrrrrr===========>	chr22:47401783-47402062(+)$1	279	166	198	10.2879
""ggggggg!!cccnnnnncccggggggg]dd	chr12:113756357-113756621(-)$1	264	23	55	10.9679
hhh[ccc!!bbbboooooobb]bb22ccc]hh	chr7:155510131-155510410(+)$1	279	225	257	12.7499
###bb####ddddoooooodddd4444bb444	chr16:89647037-89647308(+)$1	271	181	213	14.9451
========[ddddoooooodddd88888888=	chr2:134898986-134899243(+)$1	257	216	248	12.7439
ggeeeee!!a[bboooooobb]a22eeeee]g	chr8:103424364-103424624(-)$1	260	141	173	14.2245
!!dddd[a[bb[aooooooa]bb]a]dddd22	chr4:174254957-174255241(-)$1	284	237	269	13.4629
c:ddddbb[ddddoooooodddd333bb]ddd	chr1:51905781-51906111(-)$1	330	60	92	13.5278
iiiiiiii!!cccooooooccc22iiiiiiii	chr14:102177933-102178256(-)$1	323	193	225	15.8399
eee[eeeee!!bboooooobb333eeeee22e	chr22:19159887-19160153(+)$1	266	166	198	13.4031
eeeeeccc!!ddddnnnnndddd333ccc>>>	chr9:34179177-34179591(+)$1	414	150	182	11.1191
iiiiiiiiiddddoooooodddd]iiiiiiii	chr16:74638916-74639189(-)$1	273	175	207	15.5480
"""eeeee!!cccooooooccc]eeeeeeeee	chr9:132576485-132576752(-)$1	267	207	239	14.4619
!!ccc[dddd[bboooooobbdddd22ccc33	chr2:27249698-27249976(+)$1	278	119	151	13.6396
hhhhhh"""ddddoooooodddd4444hhhhh	chr4:1218905-1219150(-)$1	245	173	205	14.1076
ccc[iiiiiiiiiooooooiiiiiiiiiccc2	chr19:617803-618100(-)$1	297	121	153	14.4009
$$$eeeee!!ddddnnnnndddd]eeeee333	chr12:120532912-120533173(-)$1	261	8	40	10.4999
ee:dddd[a[cccooooooccc]a]ddddddd	chr19:55609158-55609439(-)$1	281	186	218	13.0838
bb"""hhhhhhhhoooooohhhhhhhh4444b	chr1:27883739-27883992(-)$1	253	129	161	11.6918
ddd!!ccc[ddddoooooodddd]ccc333dd	chr12:133614145-133614453(+)$1	308	116	148	15.6596
gggggg####ddddnnnnndddd22ggggggg	chr19:13262207-13262481(+)$1	274	29	61	11.4250
gggggg[a!!cccooooooccc55555a]ggg	chr7:98972306-98972665(+)$1	359	234	266	12.2752
2ddddccc!!cccooooooccc22cccggggg	chr4:1332441-1332740(+)$1	299	143	175	14.4838
e$$$$$ccc[cccooooooccc]ccc22eeee	chr2:97535515-97535849(-)$1	334	127	159	13.6880
ggggg[a!!ddddoooooodddd22a]ggggg	chr21:15352133-15352430(-)$1	297	74	106	16.0479
dd[ccc!!ccc[aooooooa]ccc22ccc]dd	chr1:1193819-1194132(-)$1	313	155	187	14.5529
ccc[cccffffffooooooffffff]cccccc	chr7:44646283-44646619(+)$1	336	233	265	12.6611
ddda[ccc[ddddoooooodddd22ccc]a]d	chr19:6424200-6424501(-)$1	301	238	270	15.3293
$$$$ddddeeeeeooooooeeeee]dddd]dd	chr9:136131158-136131421(-)$1	263	176	208	12.2674
hhh!!ccc[ddddooooooddddccc4444hh	chr6:33178891-33179177(+)$1	286	185	217	14.8298

#otherMatches

#Seq PSSM
AUUCCCUCACGGCUGGCGUGUGGACGAGGGUU	chr16:1425204-1425464(-)$1	260	23	55	12.6242
GCACCCAUCCUUGUUUUCUCGAUGUUGGGUUU	chr21:46858226-46858497(+)$1	271	175	207	14.7240
GUCAGAUCCCCAGGUAGGGCUGGGUGGUGUCC	chr8:145150558-145150831(+)$1	273	117	149	13.9229
uugagaaagcccugaaaaaagugagugaucca	chr2:127429328-127429585(+)$1	257	175	207	12.4186
CUUGGAGUCCUGUGGAUGGAUGGGGUGGUGGA	chr7:104753046-104753347(-)$1	301	40	72	13.2306
GGAAGGGAAUAUUUGUUUCAGUGUUUCAGUCU	chr19:44284332-44284626(-)$1	294	219	251	11.8951
GGGAGCUGGGUAUGUUUGGGUACCCCUCCUCU	chr2:97559957-97560192(-)$1	235	165	197	13.5971
gcggcgcgcUCCCGAGGAAGGGAGGUGUGGGG	chr8:87354871-87355164(+)$1	293	10	42	13.0194
GCUCCAGGAGACCUGCGAGGGGUGUGAGGGAG	chr9:126029739-126030001(-)$1	262	149	181	11.2967
CGGGGGGCCCGGCUUGGUUGCCGGUUCUGUGC	chr12:123994623-123994899(-)$1	276	212	244	13.1220
GCCCUGGGGAGGUGAUGGAGCCUGUUGGGGGG	chr14:105625733-105626043(-)$1	310	21	53	14.0323
GGGGUGCGGGUGUGGGUGGGGACCUGCGGCCU	chr13:115000297-115000572(+)$1	275	94	126	14.3568
GGUGUGGGAAUGUGGGGGAGGGUAGCUGACAC	chr4:74123744-74124030(-)$1	286	195	227	12.6942
ggguggugacgggggacagccccaccucucca	chr19:907385-907676(-)$1	291	110	142	14.6164
GGGCCGCCUUCAACAACAACGUGAGCGUGGCC	chr19:518682-518984(+)$1	302	205	237	13.2697
AUUGGAUGUCUAGGAAUGACUGAAAGAAACCA	chr16:1749167-1749436(+)$1	269	153	185	14.0885
GUCUCUCAGGGUGGGGGUGCACCUGGGGGGAU	chr14:23777729-23777971(+)$1	242	98	130	14.0992
AGCUGAGCUGCGAGGAAAAUGGCGGCGGGAGG	chr20:46130701-46130954(+)$1	253	31	63	13.4553
GUGAAUGCAUGUGcacauacacacacacaccu	chr21:46903557-46903878(+)$1	321	204	236	14.9234
CAGGGCAAUUUUAGAUGGGGAGGAAGCCAGGA	chr16:28507236-28507556(+)$1	320	1	33	12.5392
GGCGCUACCUUUCACAAAAGACCAGGGACCCC	chr6:30688718-30688952(+)$1	234	107	139	13.1147
GAAGGGGAGUCACGGGAGGGGACUUCUCCGGA	chr11:2400586-2400864(+)$1	278	159	191	12.6130
UGCCCACCCAGGCUGUGAAGGGUGGGAGUGGA	chr16:15238781-15239059(-)$1	278	168	200	12.2941
auguauuuagacacacccacUUUAGAUAUGUU	chr22:47401783-47402062(+)$1	279	166	198	10.2879
CAUGAGCCUCUGCAUCACCUGCAGGCUCAAGU	chr12:113756357-113756621(-)$1	264	23	55	10.9679
AAAAUCAAGAUCAGUAUAGUGCAUAAUGAGUU	chr7:155510131-155510410(+)$1	279	225	257	12.7499
ACCUGUAACACGGAACAUCCCGUCACCCAUCA	chr16:89647037-89647308(+)$1	271	181	213	14.9451
gggggcuuaguccaaucuagggcaucagaaaa	chr2:134898986-134899243(+)$1	257	216	248	12.7439
GAGGACGAGAAGGAAAGCACCAUGACGUCCAU	chr8:103424364-103424624(-)$1	260	141	173	14.2245
Ugcgccggggcgcgggcgggggcgcgggcggc	chr4:174254957-174255241(-)$1	284	237	269	13.4629
UACUCUUAACAAUGAAAUAGUUGACCUACAGA	chr1:51905781-51906111(-)$1	330	60	92	13.5278
GUUUCCUCUGAGGACUUGACCUGUGAGGGGAC	chr14:102177933-102178256(-)$1	323	193	225	15.8399
AAUGGGUGGAGUGGAACUACAGGGCCACCAUG	chr22:19159887-19160153(+)$1	266	166	198	13.4031
GGCCGAGCGAGGUGAAGGGCGCCGGAGCUAGG	chr9:34179177-34179591(+)$1	414	150	182	11.1191
GAAGAGUACUGUGAACACCUAUGUGUAUUCUU	chr16:74638916-74639189(-)$1	273	175	207	15.5480
GGUGGGUGGAUGUGGAUGAACAGCACCUUGUU	chr9:132576485-132576752(-)$1	267	207	239	14.4619
AUGUGAGGGAUGGAAAUGACCUCCUGGCACCA	chr2:27249698-27249976(+)$1	278	119	151	13.6396
GUGUGCCCUACGUGCACGGACGUCACAGCACA	chr4:1218905-1219150(-)$1	245	173	205	14.1076
GGGCGAGGCCUGCAGGAGGGUGGGCUUCCCUG	chr19:617803-618100(-)$1	297	121	153	14.4009
GCUUCUGGCAGCUGGACAUCAGCCCCAGGUAU	chr12:120532912-120533173(-)$1	261	8	40	10.4999
CCAUCCUGAGGGUGAUACGGCCaugagggguu	chr19:55609158-55609439(-)$1	281	186	218	13.0838
UGGGGCUGGAGGAGGGGAGUCCUCCGGGAGAC	chr1:27883739-27883992(-)$1	253	129	161	11.6918
GCGGGUUGGGGCUGGGCCGGGUCGUGAAGAUG	chr12:133614145-133614453(+)$1	308	116	148	15.6596
GUCCCAAGGCCUGAGAAGAUCAGUGUGGGGCA	chr19:13262207-13262481(+)$1	274	29	61	11.4250
GCGCCUGGAAGUGAGGACGCAUAGAUGUGGGG	chr7:98972306-98972665(+)$1	359	234	266	12.2752
gggcgggcagggcagcggggccaggcuggCAC	chr4:1332441-1332740(+)$1	299	143	175	14.4838
cggagggcuggcgggcgagcgcgggcaggcgg	chr2:97535515-97535849(-)$1	334	127	159	13.6880
GGAUUGCGGAUUUGGGGUUGGAUAGGGGAUUU	chr21:15352133-15352430(-)$1	297	74	106	16.0479
GGGUGCAGGGUGGGGGAAGUGGCUGAGCAGCC	chr1:1193819-1194132(-)$1	313	155	187	14.5529
CGCGCGGGGCGCGGAGCGACGCGCCAUUggcg	chr7:44646283-44646619(+)$1	336	233	265	12.6611
AGGGGCGCACUGGGGGUCACCAGGAGCGGCGC	chr19:6424200-6424501(-)$1	301	238	270	15.3293
CCAGGCCAACGGCAUCGAGGCCGUGUGGCACG	chr9:136131158-136131421(-)$1	263	176	208	12.2674
CCCAAGCGACCCCGUGGAGGGGGCGCAGGGGG	chr6:33178891-33179177(+)$1	286	185	217	14.8298

#DB
...(((((.(.((......)).)..)))))..	chr16:1425204-1425464(-)$1	1	23	55	12.6242
(.(((((.(.(((......))).).))))).)	chr21:46858226-46858497(+)$1	1	175	207	14.7240
(((((((((((((......))))).)))...)	chr8:145150558-145150831(+)$1	1	117	149	13.9229
(((.((..(((((......)).).))..))))	chr2:127429328-127429585(+)$1	1	175	207	12.4186
(((.(.(((((((......)))))))..).))	chr7:104753046-104753347(-)$1	1	40	72	13.2306
(((..((((((((......))))))))..)))	chr19:44284332-44284626(-)$1	1	219	251	11.8951
(((((..((((((......))))))...))))	chr2:97559957-97560192(-)$1	1	165	197	13.5971
.(.((((.(((((......))))))))).).)	chr8:87354871-87355164(+)$1	1	10	42	13.0194
(((((...(.((((.....)))).)...))))	chr9:126029739-126030001(-)$1	1	149	181	11.2967
((.((((((.(((......))))))))).)))	chr12:123994623-123994899(-)$1	1	212	244	13.1220
.((((.((.((((......)))).)).)))).	chr14:105625733-105626043(-)$1	1	21	53	14.0323
(((.(((((((.(......).))))))).)))	chr13:115000297-115000572(+)$1	1	94	126	14.3568
.((((.((.((.(......).))..)).))))	chr4:74123744-74124030(-)$1	1	195	227	12.6942
(((.((((..(((......))))))).).)))	chr19:907385-907676(-)$1	1	110	142	14.6164
(((((((.((((.(......))))).))))))	chr19:518682-518984(+)$1	1	205	237	13.2697
.((((...(((((......))...)))..)))	chr16:1749167-1749436(+)$1	1	153	185	14.0885
(((((((.(((((......))))).)))))))	chr14:23777729-23777971(+)$1	1	98	130	14.0992
..((..(((((.(......).))))).))...	chr20:46130701-46130954(+)$1	1	31	63	13.4553
(.(..((..((((......))))..))..)))	chr21:46903557-46903878(+)$1	1	204	236	14.9234
(..(((..((((......))))...))).)).	chr16:28507236-28507556(+)$1	1	1	33	12.5392
((.(...(((.((......))..)))..))))	chr6:30688718-30688952(+)$1	1	107	139	13.1147
...((((((((.(......))))))).))...	chr11:2400586-2400864(+)$1	1	159	191	12.6130
(..((((((..(((......))).)).)))).	chr16:15238781-15239059(-)$1	1	168	200	12.2941
(((((((((((.........))))))))))).	chr22:47401783-47402062(+)$1	1	166	198	10.2879
..(((((((..(((.....)))))))))).))	chr12:113756357-113756621(-)$1	1	23	55	10.9679
(((.(((..((((......)).))..))).))	chr7:155510131-155510410(+)$1	1	225	257	12.7499
...((....((((......))))....))...	chr16:89647037-89647308(+)$1	1	181	213	14.9451
((((((((.((((......))))........)	chr2:134898986-134899243(+)$1	1	216	248	12.7439
(((((((..(.((......)).)..))))).)	chr8:103424364-103424624(-)$1	1	141	173	14.2245
..((((.(.((.(......).)).).))))..	chr4:174254957-174255241(-)$1	1	237	269	13.4629
).((((((.((((......))))...)).)))	chr1:51905781-51906111(-)$1	1	60	92	13.5278
((((((((..(((......)))..))))))))	chr14:102177933-102178256(-)$1	1	193	225	15.8399
(((.(((((..((......))...)))))..)	chr22:19159887-19160153(+)$1	1	166	198	13.4031
((((((((..((((.....))))...)))...	chr9:34179177-34179591(+)$1	1	150	182	11.1191
(((((((((((((......)))).))))))))	chr16:74638916-74639189(-)$1	1	175	207	15.5480
...(((((..(((......))).)))))))))	chr9:132576485-132576752(-)$1	1	207	239	14.4619
..(((.((((.((......))))))..)))..	chr2:27249698-27249976(+)$1	1	119	151	13.6396
((((((...((((......))))....)))))	chr4:1218905-1219150(-)$1	1	173	205	14.1076
(((.(((((((((......)))))))))))).	chr19:617803-618100(-)$1	1	121	153	14.4009
...(((((..((((.....)))).)))))...	chr12:120532912-120533173(-)$1	1	8	40	10.4999
)).((((.(.(((......))).).))))(((	chr19:55609158-55609439(-)$1	1	186	218	13.0838
((...((((((((......))))))))....)	chr1:27883739-27883992(-)$1	1	129	161	11.6918
(((..(((.((((......)))).)))...))	chr12:133614145-133614453(+)$1	1	116	148	15.6596
((((((....((((.....))))..)))))))	chr19:13262207-13262481(+)$1	1	29	61	11.4250
((((((.(..(((......))).....).)))	chr7:98972306-98972665(+)$1	1	234	266	12.2752
.))))(((..(((......)))..)))(((((	chr4:1332441-1332740(+)$1	1	143	175	14.4838
(.....(((.(((......))).)))..))))	chr2:97535515-97535849(-)$1	1	127	159	13.6880
(((((.(..((((......))))..).)))))	chr21:15352133-15352430(-)$1	1	74	106	16.0479
((.(((..(((.(......).)))..))).))	chr1:1193819-1194132(-)$1	1	155	187	14.5529
(((.(((((((((......)))))).))))))	chr7:44646283-44646619(+)$1	1	233	265	12.6611
((((.(((.((((......))))..))).).)	chr19:6424200-6424501(-)$1	1	238	270	15.3293
....(((((((((......))))).)))).))	chr9:136131158-136131421(-)$1	1	176	208	12.2674
(((..(((.((((......)))))))....))	chr6:33178891-33179177(+)$1	1	185	217	14.8298

#PSSM
e : 0.16	c : 0.15	g : 0.15	[ : 0.07	" : 0.07	d : 0.07	h : 0.05	# : 0.03	b : 0.03	= : 0.03	! : 0.03	i : 0.03	$ : 0.03	2 : 0.01	
e : 0.15	g : 0.15	d : 0.15	" : 0.07	! : 0.07	c : 0.05	h : 0.05	$ : 0.05	# : 0.03	[ : 0.03	b : 0.03	= : 0.03	i : 0.03	a : 0.01	: : 0.01	
e : 0.15	g : 0.15	d : 0.15	[ : 0.07	" : 0.05	h : 0.05	c : 0.05	$ : 0.05	# : 0.03	b : 0.03	a : 0.03	! : 0.03	= : 0.03	i : 0.03	: : 0.01	
d : 0.16	e : 0.15	[ : 0.15	g : 0.13	! : 0.07	b : 0.05	c : 0.05	a : 0.03	= : 0.03	i : 0.03	$ : 0.03	f : 0.01	h : 0.01	" : 0.01	
d : 0.20	e : 0.16	g : 0.15	! : 0.09	c : 0.09	b : 0.05	i : 0.05	" : 0.03	= : 0.03	a : 0.01	f : 0.01	h : 0.01	$ : 0.01	[ : 0.01	
c : 0.18	d : 0.13	e : 0.11	g : 0.11	[ : 0.09	h : 0.05	" : 0.05	i : 0.05	b : 0.03	! : 0.03	f : 0.03	= : 0.03	# : 0.01	$ : 0.01	
c : 0.16	e : 0.13	d : 0.11	g : 0.09	! : 0.07	" : 0.07	b : 0.07	i : 0.05	h : 0.03	f : 0.03	= : 0.03	# : 0.03	[ : 0.03	a : 0.01	
c : 0.15	! : 0.13	e : 0.09	[ : 0.09	f : 0.07	b : 0.07	g : 0.05	" : 0.05	d : 0.05	i : 0.05	h : 0.03	= : 0.03	# : 0.03	a : 0.03	
! : 0.20	[ : 0.16	e : 0.11	f : 0.07	c : 0.07	a : 0.05	g : 0.05	d : 0.05	b : 0.03	h : 0.03	# : 0.03	i : 0.03	= : 0.01	" : 0.01	
d : 0.26	! : 0.18	[ : 0.09	e : 0.09	b : 0.07	f : 0.05	c : 0.05	a : 0.03	g : 0.03	h : 0.03	= : 0.01	i : 0.01	# : 0.01	
d : 0.32	c : 0.20	e : 0.09	[ : 0.07	f : 0.05	b : 0.05	! : 0.05	g : 0.03	h : 0.03	a : 0.01	= : 0.01	i : 0.01	
d : 0.32	c : 0.20	b : 0.15	[ : 0.11	e : 0.07	h : 0.03	f : 0.03	g : 0.01	r : 0.01	i : 0.01	
d : 0.28	c : 0.20	b : 0.15	a : 0.11	e : 0.07	h : 0.03	f : 0.03	g : 0.01	[ : 0.01	o : 0.01	r : 0.01	i : 0.01	
o : 0.84	d : 0.07	c : 0.03	a : 0.01	r : 0.01	
o : 0.88	n : 0.09	r : 0.01	
o : 0.88	n : 0.09	r : 0.01	
o : 0.88	n : 0.09	r : 0.01	
o : 0.88	n : 0.09	r : 0.01	
o : 0.86	n : 0.09	d : 0.01	r : 0.01	
d : 0.30	c : 0.18	b : 0.15	a : 0.11	e : 0.07	h : 0.03	f : 0.03	o : 0.03	g : 0.01	r : 0.01	i : 0.01	
d : 0.30	c : 0.20	b : 0.15	] : 0.09	e : 0.07	f : 0.05	h : 0.03	g : 0.01	a : 0.01	= : 0.01	i : 0.01	
d : 0.33	c : 0.22	e : 0.09	] : 0.07	f : 0.05	g : 0.03	h : 0.03	b : 0.03	3 : 0.03	2 : 0.01	= : 0.01	i : 0.01	
d : 0.33	e : 0.09	] : 0.07	f : 0.07	a : 0.05	g : 0.05	b : 0.05	3 : 0.05	2 : 0.05	h : 0.03	c : 0.03	= : 0.01	i : 0.01	5 : 0.01	
2 : 0.16	] : 0.15	e : 0.11	3 : 0.09	f : 0.07	c : 0.07	g : 0.05	d : 0.05	a : 0.03	h : 0.03	4 : 0.03	= : 0.01	b : 0.01	8 : 0.01	i : 0.01	5 : 0.01	
2 : 0.16	c : 0.11	] : 0.09	f : 0.07	d : 0.07	e : 0.07	b : 0.05	g : 0.05	3 : 0.05	i : 0.05	h : 0.03	a : 0.03	4 : 0.03	= : 0.01	8 : 0.01	5 : 0.01	
c : 0.16	e : 0.13	b : 0.09	g : 0.09	3 : 0.07	d : 0.07	] : 0.05	2 : 0.05	i : 0.05	h : 0.03	f : 0.03	4 : 0.03	= : 0.01	8 : 0.01	5 : 0.01	a : 0.01	
c : 0.18	e : 0.11	] : 0.11	2 : 0.09	g : 0.09	d : 0.07	b : 0.05	4 : 0.05	i : 0.05	h : 0.03	3 : 0.03	f : 0.01	= : 0.01	8 : 0.01	5 : 0.01	
c : 0.15	2 : 0.13	g : 0.13	e : 0.11	d : 0.11	b : 0.07	3 : 0.05	i : 0.05	a : 0.03	4 : 0.03	f : 0.01	] : 0.01	= : 0.01	8 : 0.01	h : 0.01	
e : 0.15	] : 0.15	g : 0.13	d : 0.11	c : 0.11	b : 0.07	2 : 0.05	3 : 0.03	a : 0.03	i : 0.03	4 : 0.03	= : 0.01	8 : 0.01	h : 0.01	
e : 0.16	d : 0.15	g : 0.13	3 : 0.09	] : 0.09	c : 0.07	a : 0.05	4 : 0.05	b : 0.03	i : 0.03	= : 0.01	8 : 0.01	2 : 0.01	> : 0.01	h : 0.01	
d : 0.20	g : 0.15	e : 0.11	3 : 0.09	] : 0.07	c : 0.07	h : 0.05	b : 0.03	4 : 0.03	2 : 0.03	i : 0.03	5 : 0.01	= : 0.01	8 : 0.01	> : 0.01	
d : 0.18	g : 0.16	e : 0.15	c : 0.07	3 : 0.07	b : 0.05	2 : 0.05	h : 0.05	> : 0.03	i : 0.03	5 : 0.01	] : 0.01	: : 0.01	4 : 0.01	= : 0.01	

#score	709.8754905430036
#seq	53
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565RQI_SSB_transcript_m3_run1.txt

#BEAR
effffffmmmmffffff	chr21:47558591-47558838(-)$1	247	213	230	10.3202
:ffffffmmmmffffff	chr17:73029900-73030181(+)$1	281	79	96	9.5544
ccc]ccc4444ffffff	chr16:28883235-28883471(+)$1	236	145	162	6.2420
ddd[cccmmmmccc]dd	chr14:20811347-20811558(-)$1	211	182	199	7.2358
iiiiiiiillliiiiii	chr14:20811362-20811566(-)$1	204	111	128	5.7542
####cccmmmmccceee	chr14:20811373-20811575(-)$1	202	24	41	7.6877
[ffffffmmmmffffff	chr9:35657833-35658036(-)$1	203	120	137	10.7079
####cccmmmmccceee	chr14:20811384-20811591(-)$1	207	40	57	7.6877
::fffffflllffffff	chr2:86276172-86276383(-)$1	211	29	46	6.2945
ee[a[bbmmmmbb]aee	chr21:47566716-47566975(-)$1	259	72	89	7.1802
a[fffffflllffffff	chr5:180618620-180618867(-)$1	247	79	96	8.3788
ccc[ccclllccc]ccc	chr12:6619589-6619810(+)$1	221	167	184	6.0499
[ffffffmmmmffffff	chr5:140090798-140091012(+)$1	214	60	77	10.7079
ffffffammmma]ffff	chr3:48642989-48643247(-)$1	258	89	106	9.4156
iiiiiiiillliiiiii	chr14:20811358-20811562(-)$1	204	107	124	5.7542
[ffffffmmmmffffff	chr9:35657850-35658052(-)$1	202	136	153	10.7079
[ffffffmmmmffffff	chr5:149755387-149755616(+)$1	229	167	184	10.7079
:ffffffmmmmffffff	chr5:138066716-138067009(+)$1	293	121	138	9.5544
dffffffmmmmffffff	chr9:35657836-35658044(-)$1	208	128	145	10.3212
dffffffmmmmffffff	chr9:35657824-35658033(-)$1	209	117	134	10.3212
ggggggbblllbb]ggg	chr3:186502554-186502795(+)$1	241	104	121	5.9903
fff!!bbmmmmbb]fff	chr17:7480027-7480274(+)$1	247	109	126	8.7615
dffffffmmmmffffff	chr9:35657822-35658024(-)$1	202	108	125	10.3212
cffffffmmmmffffff	chr21:47558559-47558791(-)$1	232	166	183	10.4293
==fffffflllffffff	chr17:27049545-27049810(+)$1	265	27	44	8.3806
fff!!bbmmmmbb]fff	chr17:7480116-7480359(+)$1	243	20	37	8.7615
####cccmmmmccceee	chr14:20811375-20811581(-)$1	206	30	47	7.6877
[ffffffmmmmffffff	chr5:149755370-149755584(+)$1	214	184	201	10.7079
ddd[cccmmmmccc]dd	chr13:114018197-114018435(-)$1	238	162	179	7.2358
[ffffffmmmmffffff	chr5:140090770-140090998(+)$1	228	88	105	10.7079
gggg[bbmmmmbb333g	chr9:137029516-137029762(-)$1	246	58	75	7.5939
[ffffffmmmmffffff	chr9:35657869-35658073(-)$1	204	157	174	10.7079
ffcccbbmmmmbb]ccc	chr21:47559794-47560051(-)$1	257	221	238	7.5818
[ffffffmmmmffffff	chr9:35657844-35658050(-)$1	206	134	151	10.7079
""eeeeemmmmeeeeeb	chr17:73559158-73559395(+)$1	237	22	39	6.2854
gggg[bbmmmmbbgggg	chr15:25330938-25331190(+)$1	252	137	154	7.8794
[ffffffmmmmffffff	chr9:35657813-35658022(-)$1	209	106	123	10.7079
ccc[cccmmmmccc]cc	chr21:47561079-47561339(-)$1	260	215	232	8.1279
ddd[cccmmmmccc]dd	chr14:20811343-20811547(-)$1	204	171	188	7.2358

#otherMatches

#Seq PSSM
UGCAGUGUGUCCACUGC	chr21:47558591-47558838(-)$1	247	213	230	10.3202
UGGCACGGCCACGUGCC	chr17:73029900-73030181(+)$1	281	79	96	9.5544
GAGCUGGCCCAGGGGAG	chr16:28883235-28883471(+)$1	236	145	162	6.2420
CCCGCCCUUCGGGGAGG	chr14:20811347-20811558(-)$1	211	182	199	7.2358
CUCCCUGAGCUUCGGGG	chr14:20811362-20811566(-)$1	204	111	128	5.7542
AUCAGUGGGGCCACGAG	chr14:20811373-20811575(-)$1	202	24	41	7.6877
CACGUGCAUACGCACGU	chr9:35657833-35658036(-)$1	203	120	137	10.7079
AUCAGUGGGGCCACGAG	chr14:20811384-20811591(-)$1	207	40	57	7.6877
AUUUUGGUGAAGCCAAA	chr2:86276172-86276383(-)$1	211	29	46	6.2945
CCUGGGGUUUUCUGCGG	chr21:47566716-47566975(-)$1	259	72	89	7.1802
UGCUUUUGUGUCAAAAG	chr5:180618620-180618867(-)$1	247	79	96	8.3788
AGUGAGUGAAACUGACU	chr12:6619589-6619810(+)$1	221	167	184	6.0499
CGGGCUGGCUUUAGCUC	chr5:140090798-140091012(+)$1	214	60	77	10.7079
UUGUCCCUCCUGAGGAU	chr3:48642989-48643247(-)$1	258	89	106	9.4156
CUCCCUGAGCUUCGGGG	chr14:20811358-20811562(-)$1	204	107	124	5.7542
CACGUGCAUACGCACGU	chr9:35657850-35658052(-)$1	202	136	153	10.7079
GCAGAGCAUGGGUUUUG	chr5:149755387-149755616(+)$1	229	167	184	10.7079
ugguuaaaagguuggcc	chr5:138066716-138067009(+)$1	293	121	138	9.5544
CACGUGCAUACGCACGU	chr9:35657836-35658044(-)$1	208	128	145	10.3212
CACGUGCAUACGCACGU	chr9:35657824-35658033(-)$1	209	117	134	10.3212
UUUGGGCAUAAUGUUCC	chr3:186502554-186502795(+)$1	241	104	121	5.9903
AUGGAGCCCAUGCGUGU	chr17:7480027-7480274(+)$1	247	109	126	8.7615
CACGUGCAUACGCACGU	chr9:35657822-35658024(-)$1	202	108	125	10.3212
UGCAGUGUGUCCACUGC	chr21:47558559-47558791(-)$1	232	166	183	10.4293
UUGGGGCUUCAGGCCCU	chr17:27049545-27049810(+)$1	265	27	44	8.3806
AUGGAGCCCAUGCGUGU	chr17:7480116-7480359(+)$1	243	20	37	8.7615
AUCAGUGGGGCCACGAG	chr14:20811375-20811581(-)$1	206	30	47	7.6877
GCAGAGCAUGGGUUUUG	chr5:149755370-149755584(+)$1	214	184	201	10.7079
CCCAGAGGAAACUUCGG	chr13:114018197-114018435(-)$1	238	162	179	7.2358
CGGGCUGGCUUUAGCUC	chr5:140090770-140090998(+)$1	228	88	105	10.7079
GCGCAGGGAAGCCGAGG	chr9:137029516-137029762(-)$1	246	58	75	7.5939
CACGUGCAUACGCACGU	chr9:35657869-35658073(-)$1	204	157	174	10.7079
GCCCAGGGAGACCAUGG	chr21:47559794-47560051(-)$1	257	221	238	7.5818
CACGUGCAUACGCACGU	chr9:35657844-35658050(-)$1	206	134	151	10.7079
GAUCGGCUACAGCCGAG	chr17:73559158-73559395(+)$1	237	22	39	6.2854
GCAUUGUGAGCACAUGC	chr15:25330938-25331190(+)$1	252	137	154	7.8794
CACGUGCAUACGCACGU	chr9:35657813-35658022(-)$1	209	106	123	10.7079
agucgugauugcaccac	chr21:47561079-47561339(-)$1	260	215	232	8.1279
CCCGCCCUUCGGGGAGG	chr14:20811343-20811547(-)$1	204	171	188	7.2358

#DB
)((((((....))))))	chr21:47558591-47558838(-)$1	1	213	230	10.3202
.((((((....))))))	chr17:73029900-73030181(+)$1	1	79	96	9.5544
))).)))....))))))	chr16:28883235-28883471(+)$1	1	145	162	6.2420
(((.(((....))).))	chr14:20811347-20811558(-)$1	1	182	199	7.2358
((((((((...))))))	chr14:20811362-20811566(-)$1	1	111	128	5.7542
....(((....))))))	chr14:20811373-20811575(-)$1	1	24	41	7.6877
.((((((....))))))	chr9:35657833-35658036(-)$1	1	120	137	10.7079
....(((....))))))	chr14:20811384-20811591(-)$1	1	40	57	7.6877
..((((((...))))))	chr2:86276172-86276383(-)$1	1	29	46	6.2945
((.(.((....)).)))	chr21:47566716-47566975(-)$1	1	72	89	7.1802
(.((((((...))))))	chr5:180618620-180618867(-)$1	1	79	96	8.3788
(((.(((...))).)))	chr12:6619589-6619810(+)$1	1	167	184	6.0499
.((((((....))))))	chr5:140090798-140091012(+)$1	1	60	77	10.7079
(((((((....).))))	chr3:48642989-48643247(-)$1	1	89	106	9.4156
((((((((...))))))	chr14:20811358-20811562(-)$1	1	107	124	5.7542
.((((((....))))))	chr9:35657850-35658052(-)$1	1	136	153	10.7079
.((((((....))))))	chr5:149755387-149755616(+)$1	1	167	184	10.7079
.((((((....))))))	chr5:138066716-138067009(+)$1	1	121	138	9.5544
)((((((....))))))	chr9:35657836-35658044(-)$1	1	128	145	10.3212
)((((((....))))))	chr9:35657824-35658033(-)$1	1	117	134	10.3212
((((((((...)).)))	chr3:186502554-186502795(+)$1	1	104	121	5.9903
(((..((....)).)))	chr17:7480027-7480274(+)$1	1	109	126	8.7615
)((((((....))))))	chr9:35657822-35658024(-)$1	1	108	125	10.3212
)((((((....))))))	chr21:47558559-47558791(-)$1	1	166	183	10.4293
((((((((...))))))	chr17:27049545-27049810(+)$1	1	27	44	8.3806
(((..((....)).)))	chr17:7480116-7480359(+)$1	1	20	37	8.7615
....(((....))))))	chr14:20811375-20811581(-)$1	1	30	47	7.6877
.((((((....))))))	chr5:149755370-149755584(+)$1	1	184	201	10.7079
(((.(((....))).))	chr13:114018197-114018435(-)$1	1	162	179	7.2358
.((((((....))))))	chr5:140090770-140090998(+)$1	1	88	105	10.7079
((((.((....))...)	chr9:137029516-137029762(-)$1	1	58	75	7.5939
.((((((....))))))	chr9:35657869-35658073(-)$1	1	157	174	10.7079
))(((((....)).)))	chr21:47559794-47560051(-)$1	1	221	238	7.5818
.((((((....))))))	chr9:35657844-35658050(-)$1	1	134	151	10.7079
..(((((....))))))	chr17:73559158-73559395(+)$1	1	22	39	6.2854
((((.((....))))))	chr15:25330938-25331190(+)$1	1	137	154	7.8794
.((((((....))))))	chr9:35657813-35658022(-)$1	1	106	123	10.7079
(((.(((....))).))	chr21:47561079-47561339(-)$1	1	215	232	8.1279
(((.(((....))).))	chr14:20811343-20811547(-)$1	1	171	188	7.2358

#PSSM
[ : 0.23	d : 0.15	c : 0.10	f : 0.10	: : 0.07	# : 0.07	g : 0.07	e : 0.05	i : 0.05	a : 0.02	= : 0.02	" : 0.02	
f : 0.51	c : 0.07	d : 0.07	# : 0.07	g : 0.07	i : 0.05	: : 0.02	e : 0.02	[ : 0.02	= : 0.02	" : 0.02	
f : 0.56	c : 0.10	d : 0.07	# : 0.07	g : 0.07	i : 0.05	[ : 0.02	e : 0.02	
f : 0.51	[ : 0.12	# : 0.07	g : 0.07	i : 0.05	! : 0.05	] : 0.02	a : 0.02	c : 0.02	e : 0.02	
f : 0.51	c : 0.25	[ : 0.07	i : 0.05	! : 0.05	g : 0.02	e : 0.02	
f : 0.51	c : 0.23	b : 0.15	i : 0.05	g : 0.02	e : 0.02	
f : 0.48	c : 0.23	b : 0.17	i : 0.05	a : 0.02	e : 0.02	
m : 0.79	f : 0.07	i : 0.05	4 : 0.02	l : 0.02	b : 0.02	
m : 0.79	l : 0.17	4 : 0.02	
m : 0.79	l : 0.17	4 : 0.02	
m : 0.79	l : 0.15	4 : 0.02	c : 0.02	
f : 0.51	c : 0.20	b : 0.17	i : 0.05	a : 0.02	e : 0.02	
f : 0.51	c : 0.20	b : 0.17	i : 0.05	] : 0.02	e : 0.02	
f : 0.53	c : 0.17	] : 0.15	i : 0.05	3 : 0.02	e : 0.02	g : 0.02	
f : 0.58	] : 0.10	e : 0.10	i : 0.05	c : 0.05	g : 0.05	a : 0.02	3 : 0.02	
f : 0.58	e : 0.12	d : 0.07	c : 0.07	i : 0.05	g : 0.05	3 : 0.02	
f : 0.58	e : 0.10	d : 0.07	c : 0.07	g : 0.07	i : 0.05	b : 0.02	

#score	336.39668708619496
#seq	39
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF767LWE_PUM2_UTR_m1_run1.txt

#BEAR
!eeeeeuuuuuuuuuuuueeeee2	chr13:73282626-73282884(-)$1	258	53	77	23.0100
:eeeeettttttttttteeeee:F	chr5:112180462-112180730(+)$1	268	86	110	21.2714
""bbvvvvvvvvvvvvvbb22ddd	chr6:33421048-33421321(+)$1	273	76	100	20.2777
eeeeewwwwwwwwwwwwwweeeee	chr22:39414932-39415235(+)$1	303	39	63	20.9491
""ddddtttttttttttdddd333	chr5:130977369-130977656(-)$1	287	12	36	24.1916
deeeeeuuuuuuuuuuuueeeee]	chr13:80910225-80910489(-)$1	264	62	86	22.8055
b[cccuuuuuuuuuuuuccc]bb]	chr14:20925618-20925864(+)$1	246	21	45	22.2061
iiiiiivvvvvvvvvvvvviiiii	chr16:30613855-30614101(-)$1	246	41	65	22.0785
"eeeeettttttttttteeeee44	chr6:13621766-13622032(-)$1	266	152	176	23.9740
ggggggwwwwwwwwwwwwwwgggg	chr5:112179802-112180081(+)$1	279	50	74	20.1444
ccc[bbtttttttttttbb]ccc]	chr19:56164244-56164542(+)$1	298	183	207	22.5430
ggggggtttttttttttggggggg	chr9:96441325-96441617(+)$1	292	66	90	23.1716
!eeeeewwwwwwwwwwwwwweeee	chrX:40465306-40465614(+)$1	308	57	81	20.4527
==[ccctttttttttttccc]===	chr9:114980977-114981198(-)$1	221	63	87	23.8033
!eeeeettttttttttteeeee22	chr2:20449991-20450254(-)$1	263	224	248	23.6248
eeddddtttttttttttdddd444	chr20:17971356-17971655(+)$1	299	239	263	23.8125
eee[bbtttttttttttbb]eeee	chr2:160175882-160176151(-)$1	269	60	84	22.6759
iiiiiivvvvvvvvvvvvviiiii	chr11:64532380-64532648(-)$1	268	33	57	22.0785
fffffftttttttttttffffffg	chr10:22031720-22031972(+)$1	252	126	150	22.1911
c[ddddtttttttttttdddd]cc	chr17:57187276-57187510(-)$1	234	54	78	23.6463
hhhhhhttttttttttthhhhhhh	chrX:123044261-123044532(+)$1	271	244	268	20.6654
[eeeeettttttttttteeeee]f	chr3:128532780-128533059(+)$1	279	117	141	23.6055
cccccctttttttttttccc]ccc	chr7:75046321-75046596(-)$1	275	128	152	23.2694
#dddduuuuuuuuuuuudddd444	chr2:172338078-172338366(+)$1	288	249	273	23.2598
iiiiiuuuuuuuuuuuuiiiiiii	chr1:39471367-39471619(+)$1	252	169	193	22.8406
$dddduuuuuuuuuuuudddd444	chr7:104753713-104753991(+)$1	278	31	55	23.0613
[eeeeevvvvvvvvvvvvveeeee	chr1:42642320-42642565(-)$1	245	26	50	22.2985
ddddyyyyyyyyyyyyyyyydddd	chr1:114304432-114304710(-)$1	278	190	214	19.9861
ii!!bbvvvvvvvvvvvvvbb333	chr7:107560040-107560319(+)$1	279	11	35	21.7613
d!!ccctttttttttttccc22dd	chr9:19373493-19373729(+)$1	236	89	113	22.9318
fffffuuuuuuuuuuuuffffff2	chr22:22115111-22115391(-)$1	280	16	40	21.7621
gyyyyyyyyyyyyyyyyggggggg	chr1:179887928-179888233(+)$1	305	64	88	19.8999
e[ddddtttttttttttdddd]ee	chr2:75118824-75119053(+)$1	229	116	140	23.5540
ddyyyyyyyyyyyyyyyydddd>>	chr1:75171800-75172068(-)$1	268	128	152	20.0714
[cccwwwwwwwwwwwwwwccc]bb	chr11:71808682-71808933(-)$1	251	3	27	20.4769
ddddddtttttttttttdddd555	chr4:110638602-110638865(-)$1	263	191	215	21.4984
iiiiiitttttttttttiiiiiii	chr1:1683502-1683755(-)$1	253	106	130	23.2964
eyyyyyyyyyyyyyyyyeeeee33	chr12:51140115-51140398(+)$1	283	35	59	20.4812
cc[ccctttttttttttccc22cc	chr19:4443077-4443328(+)$1	251	136	160	23.1106
]addddtttttttttttdddd:::	chr5:131607874-131608114(+)$1	240	93	117	20.4623
ggggggtttttttttttggggggg	chr4:1694976-1695232(-)$1	256	222	246	23.1716
""ddddtttttttttttdddd]dd	chr6:136579638-136579888(-)$1	250	220	244	23.4532
b[ddddtttttttttttdddd]bb	chr14:69847057-69847277(-)$1	220	152	176	22.9469
""cccvvvvvvvvvvvvvccc333	chr16:23614402-23614678(-)$1	276	208	232	23.1295
ggggggtttttttttttggggggg	chr3:133319486-133319745(-)$1	259	9	33	23.1716
!!ddddtttttttttttdddd]hh	chr3:128198265-128198502(-)$1	237	55	79	23.3598
[dddduuuuuuuuuuuuddddeee	chr1:206822187-206822477(+)$1	290	146	170	22.8675
cc!!bbtttttttttttbb4444c	chr14:96998861-96999092(+)$1	231	58	82	22.6598
ffffffuuuuuuuuuuuuffffff	chr1:100549338-100549589(-)$1	251	225	249	21.4423
:eeeeeuuuuuuuuuuuueeeee:	chr2:111395409-111395659(-)$1	250	27	51	21.1131
ggggggvvvvvvvvvvvvvggggg	chr5:114949212-114949481(-)$1	269	188	212	21.9692
fffffuuuuuuuuuuuuffffff2	chr9:127998725-127998945(-)$1	220	123	147	21.7621
eeeevvvvvvvvvvvvveeeee55	chr18:66343166-66343427(-)$1	261	53	77	21.1965
"""cccvvvvvvvvvvvvvccc55	chr8:21862750-21863050(+)$1	300	83	107	21.0134
iiiiiuuuuuuuuuuuuiiiiiii	chr15:66841542-66841831(+)$1	289	232	256	22.8406
ee[bbuuuuuuuuuuuubb]eeee	chr11:57584682-57584906(+)$1	224	10	34	21.9452
fyyyyyyyyyyyyyyyyffffff4	chr10:5498858-5499105(+)$1	247	134	158	19.5701
fffffftttttttttttffffff:	chr1:229577416-229577692(-)$1	276	125	149	21.4298
""ddddtttttttttttdddd333	chr14:52466324-52466590(+)$1	266	171	195	24.1916
eeeeeattttttttttta]eeeee	chr1:215794907-215795148(+)$1	241	115	139	23.5843
ffffbbtttttttttttbb]ffff	chr6:161536070-161536311(+)$1	241	133	157	21.8539
ddd!!avvvvvvvvvvvvva22dd	chr19:10795556-10795839(+)$1	283	86	110	21.3347
:ddddwwwwwwwwwwwwwwdddd:	chr18:29709180-29709430(+)$1	250	176	200	18.8925
eeeevvvvvvvvvvvvveeeee]a	chr17:663037-663383(-)$1	346	206	230	22.2628
f[ddddtttttttttttdddd]ff	chr15:65442966-65443246(-)$1	280	163	187	23.4167
eeeevvvvvvvvvvvvveeeee>>	chr7:50469829-50470118(+)$1	289	97	121	22.1148

#otherMatches

#Seq PSSM
CAACACUACAAAUACUAUGUGUUA	chr13:73282626-73282884(-)$1	258	53	77	23.0100
CUAUGCUGUAAUUUGUUGUAUAUU	chr5:112180462-112180730(+)$1	268	86	110	21.2714
UUCCUUCUCUCUUCUUUGGCUGUU	chr6:33421048-33421321(+)$1	273	76	100	20.2777
gggcaacagauagagacccugccu	chr22:39414932-39415235(+)$1	303	39	63	20.9491
UUUGUUUUGUUCCAAUUGGCAUAC	chr5:130977369-130977656(-)$1	287	12	36	24.1916
UCAAUCAGUAUGUUUUUAGAUUGU	chr13:80910225-80910489(-)$1	264	62	86	22.8055
UCCUAUCACCCUAUACCUAGCACU	chr14:20925618-20925864(+)$1	246	21	45	22.2061
CUCCUGAUCUCAGCACAAGCAGGG	chr16:30613855-30614101(-)$1	246	41	65	22.0785
UUAUUUAUAUAAAAACCAAAUAUU	chr6:13621766-13622032(-)$1	266	152	176	23.9740
CUAUGUUAAUUACAACUGCUAUAU	chr5:112179802-112180081(+)$1	279	50	74	20.1444
CUGCCCACCUGAUUCCCGGACAGA	chr19:56164244-56164542(+)$1	298	183	207	22.5430
CUGUAAUUUAUUAAUGUUUGUAGC	chr9:96441325-96441617(+)$1	292	66	90	23.1716
AAUGCUUAACUUCUUUACACAGCA	chrX:40465306-40465614(+)$1	308	57	81	20.4527
UGCUGUAAAUAUUUGUAACAACAU	chr9:114980977-114981198(-)$1	221	63	87	23.8033
UAUGAACCAGCUUUCUUUUUAUUA	chr2:20449991-20450254(-)$1	263	224	248	23.6248
UUUGGGAAACUUAAAUGCCCAUUA	chr20:17971356-17971655(+)$1	299	239	263	23.8125
AUAUACUGUUCAUUCUUGUUUAUA	chr2:160175882-160176151(-)$1	269	60	84	22.6759
UUGUGGGUUUUUCAAGGUGCCAUA	chr11:64532380-64532648(-)$1	268	33	57	22.0785
CUCAGGCAAAACUAUUACCUGGGU	chr10:22031720-22031972(+)$1	252	126	150	22.1911
gaauauucaaguuaaacaugucca	chr17:57187276-57187510(-)$1	234	54	78	23.6463
ucaggagaucgagaccauccuggc	chrX:123044261-123044532(+)$1	271	244	268	20.6654
GUUAAUAUAUGCAACCAAUUAAAA	chr3:128532780-128533059(+)$1	279	117	141	23.6055
CUCCCCGUUGUGACUGAGGGCGAG	chr7:75046321-75046596(-)$1	275	128	152	23.2694
UCUGAUUUGCAUCCUGUUUAGCUC	chr2:172338078-172338366(+)$1	288	249	273	23.2598
AAAUAAAAUACUUAAGCUAUUUGU	chr1:39471367-39471619(+)$1	252	169	193	22.8406
UUUCAAAACAAUUACCAUGGGUCA	chr7:104753713-104753991(+)$1	278	31	55	23.0613
UUCAAAUGGAAUAGAGUAUUUUGA	chr1:42642320-42642565(-)$1	245	26	50	22.2985
GGAAUGCAUAGUUUUUUUUUUUCC	chr1:114304432-114304710(-)$1	278	190	214	19.9861
UGGAGCUAGAAUUUGAUAUGUGAA	chr7:107560040-107560319(+)$1	279	11	35	21.7613
GUAAAUUUAUUAAGCUUGUUGCCA	chr9:19373493-19373729(+)$1	236	89	113	22.9318
UAUGUUAAUACACACAUACAUACG	chr22:22115111-22115391(-)$1	280	16	40	21.7621
AGUCAAACAUAGGUAUAUGAACUG	chr1:179887928-179888233(+)$1	305	64	88	19.8999
UUUAUAUGUUAAUUUGUUAUGUAU	chr2:75118824-75119053(+)$1	229	116	140	23.5540
ACUGUCUUUCCCCCAGUUGUACUU	chr1:75171800-75172068(-)$1	268	128	152	20.0714
GCACUUUCUCAGAUCCGUGUGGAC	chr11:71808682-71808933(-)$1	251	3	27	20.4769
GUGUACUUUUUAAAGUUGUAUCAA	chr4:110638602-110638865(-)$1	263	191	215	21.4984
UAGAGACUCUUUUAAACUUUCUGA	chr1:1683502-1683755(-)$1	253	106	130	23.2964
CCCCACUGUAACAUCAUGUAAACU	chr12:51140115-51140398(+)$1	283	35	59	20.4812
AUCUGCCCUUUAAUAAAGCAUUAU	chr19:4443077-4443328(+)$1	251	136	160	23.1106
CCGGUGUAAAUAUGUUUCACCCUG	chr5:131607874-131608114(+)$1	240	93	117	20.4623
CAGGCAUCUUCAGUUAUUGCUUGU	chr4:1694976-1695232(-)$1	256	222	246	23.1716
UUUAGAAUAUCAGCGCAUCUGUUA	chr6:136579638-136579888(-)$1	250	220	244	23.4532
UUAGAUGAAAUGUGAGGAUCUUGU	chr14:69847057-69847277(-)$1	220	152	176	22.9469
UAUUGUUUCCCAUUCUUUCAAGAU	chr16:23614402-23614678(-)$1	276	208	232	23.1295
CAAAUUCAUAACAACAAGAUUUGU	chr3:133319486-133319745(-)$1	259	9	33	23.1716
AAAGAAUCGGCAGUAUUUUCUGUU	chr3:128198265-128198502(-)$1	237	55	79	23.3598
GCAUAUGUGUAUAUUUUUAUGAUC	chr1:206822187-206822477(+)$1	290	146	170	22.8675
GCCAGCUUUAUCCAAAUGCAAUAG	chr14:96998861-96999092(+)$1	231	58	82	22.6598
UCUUUGCAUAUAUAUACACAAGGA	chr1:100549338-100549589(-)$1	251	225	249	21.4423
AAGUAUUUCAACAACACUAUACUA	chr2:111395409-111395659(-)$1	250	27	51	21.1131
CAGAGGGGUUUUUCAUUUACUUUU	chr5:114949212-114949481(-)$1	269	188	212	21.9692
UUUUGUUAGGAAAAAAUUGAAAGA	chr9:127998725-127998945(-)$1	220	123	147	21.7621
uuucuauuuuauauauugagauuu	chr18:66343166-66343427(-)$1	261	53	77	21.1965
UAAGAGAUACAAACUGAGACUCCA	chr8:21862750-21863050(+)$1	300	83	107	21.0134
UCUCUGAUUGCCCUUAUGGAGAAA	chr15:66841542-66841831(+)$1	289	232	256	22.8406
ACUGGCUUCCCCACUCCCCCGUUU	chr11:57584682-57584906(+)$1	224	10	34	21.9452
UUUGUUUAUAAAUGUGUACAGUUU	chr10:5498858-5499105(+)$1	247	134	158	19.5701
UGUACAAUUUCAUAACAUGUAUAG	chr1:229577416-229577692(-)$1	276	125	149	21.4298
UUACCUGGUAAUGCUUAAGGUCAG	chr14:52466324-52466590(+)$1	266	171	195	24.1916
CAUUCCAAGAAAUAUAAGUGAGUG	chr1:215794907-215795148(+)$1	241	115	139	23.5843
GGAUGGGACAUAAGCCACCAAUCC	chr6:161536070-161536311(+)$1	241	133	157	21.8539
UUUUUCUUAUUGCGAGCAUGUUAA	chr19:10795556-10795839(+)$1	283	86	110	21.3347
AGGUGUAAAAAAGAUGUUUCACUA	chr18:29709180-29709430(+)$1	250	176	200	18.8925
CGCAUUCUGUAUAUAACUGUGUUG	chr17:663037-663383(-)$1	346	206	230	22.2628
UAAAGGCAUUGGAUCUAUCUUGGA	chr15:65442966-65443246(-)$1	280	163	187	23.4167
CACCAACACUGUCCCAAGGUGAAA	chr7:50469829-50470118(+)$1	289	97	121	22.1148

#DB
.(((((............))))).	chr13:73282626-73282884(-)$1	1	53	77	23.0100
.(((((...........))))).)	chr5:112180462-112180730(+)$1	1	86	110	21.2714
..((.............))..)))	chr6:33421048-33421321(+)$1	1	76	100	20.2777
(((((..............)))))	chr22:39414932-39415235(+)$1	1	39	63	20.9491
..((((...........))))...	chr5:130977369-130977656(-)$1	1	12	36	24.1916
((((((............))))).	chr13:80910225-80910489(-)$1	1	62	86	22.8055
(.(((............))).)).	chr14:20925618-20925864(+)$1	1	21	45	22.2061
((((((.............)))))	chr16:30613855-30614101(-)$1	1	41	65	22.0785
.(((((...........)))))..	chr6:13621766-13622032(-)$1	1	152	176	23.9740
((((((..............))))	chr5:112179802-112180081(+)$1	1	50	74	20.1444
(((.((...........)).))).	chr19:56164244-56164542(+)$1	1	183	207	22.5430
((((((...........)))))))	chr9:96441325-96441617(+)$1	1	66	90	23.1716
.(((((..............))))	chrX:40465306-40465614(+)$1	1	57	81	20.4527
((.(((...........))).)))	chr9:114980977-114981198(-)$1	1	63	87	23.8033
.(((((...........)))))..	chr2:20449991-20450254(-)$1	1	224	248	23.6248
((((((...........))))...	chr20:17971356-17971655(+)$1	1	239	263	23.8125
(((.((...........)).))))	chr2:160175882-160176151(-)$1	1	60	84	22.6759
((((((.............)))))	chr11:64532380-64532648(-)$1	1	33	57	22.0785
((((((...........)))))))	chr10:22031720-22031972(+)$1	1	126	150	22.1911
(.((((...........)))).))	chr17:57187276-57187510(-)$1	1	54	78	23.6463
((((((...........)))))))	chrX:123044261-123044532(+)$1	1	244	268	20.6654
.(((((...........))))).)	chr3:128532780-128533059(+)$1	1	117	141	23.6055
((((((...........))).)))	chr7:75046321-75046596(-)$1	1	128	152	23.2694
.((((............))))...	chr2:172338078-172338366(+)$1	1	249	273	23.2598
(((((............)))))))	chr1:39471367-39471619(+)$1	1	169	193	22.8406
.((((............))))...	chr7:104753713-104753991(+)$1	1	31	55	23.0613
.(((((.............)))))	chr1:42642320-42642565(-)$1	1	26	50	22.2985
((((................))))	chr1:114304432-114304710(-)$1	1	190	214	19.9861
((..((.............))...	chr7:107560040-107560319(+)$1	1	11	35	21.7613
(..(((...........)))..))	chr9:19373493-19373729(+)$1	1	89	113	22.9318
(((((............)))))).	chr22:22115111-22115391(-)$1	1	16	40	21.7621
(................)))))))	chr1:179887928-179888233(+)$1	1	64	88	19.8999
(.((((...........)))).))	chr2:75118824-75119053(+)$1	1	116	140	23.5540
((................))))..	chr1:75171800-75172068(-)$1	1	128	152	20.0714
.(((..............))).))	chr11:71808682-71808933(-)$1	1	3	27	20.4769
((((((...........))))...	chr4:110638602-110638865(-)$1	1	191	215	21.4984
((((((...........)))))))	chr1:1683502-1683755(-)$1	1	106	130	23.2964
(................)))))..	chr12:51140115-51140398(+)$1	1	35	59	20.4812
((.(((...........)))..))	chr19:4443077-4443328(+)$1	1	136	160	23.1106
.)((((...........))))...	chr5:131607874-131608114(+)$1	1	93	117	20.4623
((((((...........)))))))	chr4:1694976-1695232(-)$1	1	222	246	23.1716
..((((...........)))).))	chr6:136579638-136579888(-)$1	1	220	244	23.4532
(.((((...........)))).))	chr14:69847057-69847277(-)$1	1	152	176	22.9469
..(((.............)))...	chr16:23614402-23614678(-)$1	1	208	232	23.1295
((((((...........)))))))	chr3:133319486-133319745(-)$1	1	9	33	23.1716
..((((...........)))).))	chr3:128198265-128198502(-)$1	1	55	79	23.3598
.((((............)))))))	chr1:206822187-206822477(+)$1	1	146	170	22.8675
((..((...........))....)	chr14:96998861-96999092(+)$1	1	58	82	22.6598
((((((............))))))	chr1:100549338-100549589(-)$1	1	225	249	21.4423
.(((((............))))).	chr2:111395409-111395659(-)$1	1	27	51	21.1131
((((((.............)))))	chr5:114949212-114949481(-)$1	1	188	212	21.9692
(((((............)))))).	chr9:127998725-127998945(-)$1	1	123	147	21.7621
((((.............)))))..	chr18:66343166-66343427(-)$1	1	53	77	21.1965
...(((.............)))..	chr8:21862750-21863050(+)$1	1	83	107	21.0134
(((((............)))))))	chr15:66841542-66841831(+)$1	1	232	256	22.8406
((.((............)).))))	chr11:57584682-57584906(+)$1	1	10	34	21.9452
(................)))))).	chr10:5498858-5499105(+)$1	1	134	158	19.5701
((((((...........)))))).	chr1:229577416-229577692(-)$1	1	125	149	21.4298
..((((...........))))...	chr14:52466324-52466590(+)$1	1	171	195	24.1916
((((((...........).)))))	chr1:215794907-215795148(+)$1	1	115	139	23.5843
((((((...........)).))))	chr6:161536070-161536311(+)$1	1	133	157	21.8539
(((..(.............)..))	chr19:10795556-10795839(+)$1	1	86	110	21.3347
.((((..............)))).	chr18:29709180-29709430(+)$1	1	176	200	18.8925
((((.............))))).)	chr17:663037-663383(-)$1	1	206	230	22.2628
(.((((...........)))).))	chr15:65442966-65443246(-)$1	1	163	187	23.4167
((((.............)))))..	chr7:50469829-50470118(+)$1	1	97	121	22.1148

#PSSM
e : 0.15	f : 0.12	" : 0.10	d : 0.09	i : 0.09	g : 0.09	c : 0.07	! : 0.06	[ : 0.06	: : 0.04	b : 0.03	= : 0.01	h : 0.01	# : 0.01	$ : 0.01	] : 0.01	
e : 0.25	d : 0.12	" : 0.09	i : 0.09	f : 0.09	[ : 0.07	g : 0.07	c : 0.07	y : 0.04	! : 0.03	= : 0.01	h : 0.01	a : 0.01	
d : 0.25	e : 0.22	f : 0.09	c : 0.07	i : 0.07	g : 0.07	y : 0.06	[ : 0.04	! : 0.04	b : 0.01	h : 0.01	" : 0.01	
d : 0.24	e : 0.21	c : 0.12	f : 0.09	i : 0.07	g : 0.07	y : 0.06	! : 0.04	b : 0.03	[ : 0.03	h : 0.01	
d : 0.22	e : 0.16	c : 0.10	b : 0.09	i : 0.07	g : 0.07	f : 0.07	y : 0.07	v : 0.06	h : 0.01	w : 0.01	! : 0.01	
d : 0.16	e : 0.13	u : 0.13	v : 0.07	g : 0.07	b : 0.07	c : 0.07	y : 0.07	w : 0.04	i : 0.04	f : 0.04	a : 0.03	h : 0.01	
t : 0.46	u : 0.19	v : 0.18	w : 0.07	y : 0.07	
t : 0.46	u : 0.19	v : 0.18	w : 0.07	y : 0.07	
t : 0.46	u : 0.19	v : 0.18	w : 0.07	y : 0.07	
t : 0.46	u : 0.19	v : 0.18	w : 0.07	y : 0.07	
t : 0.46	u : 0.19	v : 0.18	w : 0.07	y : 0.07	
t : 0.46	u : 0.19	v : 0.18	w : 0.07	y : 0.07	
t : 0.46	u : 0.19	v : 0.18	w : 0.07	y : 0.07	
t : 0.46	u : 0.19	v : 0.18	w : 0.07	y : 0.07	
t : 0.46	u : 0.19	v : 0.18	w : 0.07	y : 0.07	
t : 0.46	u : 0.19	v : 0.18	w : 0.07	y : 0.07	
t : 0.46	u : 0.19	v : 0.18	w : 0.07	y : 0.07	
d : 0.21	e : 0.12	v : 0.12	b : 0.09	w : 0.07	c : 0.07	f : 0.07	u : 0.06	g : 0.06	i : 0.04	y : 0.03	h : 0.01	a : 0.01	
d : 0.22	e : 0.16	c : 0.10	v : 0.10	b : 0.09	f : 0.09	w : 0.06	g : 0.06	i : 0.04	h : 0.01	y : 0.01	] : 0.01	
d : 0.24	e : 0.21	c : 0.12	f : 0.09	i : 0.07	g : 0.07	] : 0.06	w : 0.03	2 : 0.01	h : 0.01	y : 0.01	b : 0.01	4 : 0.01	a : 0.01	
e : 0.25	d : 0.25	f : 0.10	g : 0.09	i : 0.07	2 : 0.06	c : 0.06	] : 0.04	h : 0.01	b : 0.01	4 : 0.01	
e : 0.27	f : 0.10	] : 0.10	g : 0.09	i : 0.07	d : 0.06	3 : 0.06	4 : 0.06	c : 0.04	2 : 0.04	b : 0.01	= : 0.01	h : 0.01	5 : 0.01	: : 0.01	
e : 0.16	f : 0.12	d : 0.09	g : 0.09	3 : 0.07	i : 0.07	4 : 0.07	c : 0.06	b : 0.04	5 : 0.04	: : 0.03	h : 0.03	] : 0.03	> : 0.03	= : 0.01	2 : 0.01	
e : 0.12	g : 0.10	d : 0.07	3 : 0.07	i : 0.07	4 : 0.07	2 : 0.06	c : 0.06	f : 0.06	: : 0.06	] : 0.04	5 : 0.04	h : 0.03	> : 0.03	b : 0.03	F : 0.01	= : 0.01	a : 0.01	

#score	1463.89788304258
#seq	66
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_CDS_m2_run2.txt

#BEAR
vvvvvvvvvvvvvccc	chrX:140994816-140995070(+)$1	254	106	122	16.5756
ffssssssssssffff	chr19:42401903-42402191(+)$1	288	169	185	12.2027
^^^^^^^^^^^^^eee	chr16:68324077-68324405(+)$1	328	130	146	11.2046
ggtttttttttttggg	chr5:140698599-140698866(-)$1	267	189	205	16.6340
bbuuuuuuuuuuuubb	chr22:18276456-18276725(-)$1	269	31	47	16.6212
bbssssssssssbb44	chr2:70129719-70129974(+)$1	255	107	123	11.9370
ddssssssssssdddd	chr16:30734109-30734393(+)$1	284	264	280	12.0744
ccssssssssssccc:	chr7:141464567-141464841(+)$1	274	135	151	11.8358
eerrrrrrrrreeeee	chr5:176917484-176917744(-)$1	260	215	231	8.8174
bbssssssssssbb33	chr19:57742855-57743216(+)$1	361	262	278	11.9151
bbvvvvvvvvvvvvvb	chr1:109816492-109816802(+)$1	310	55	71	15.7917
vvvvvvvvvvvvvggg	chr1:14107383-14107661(+)$1	278	155	171	16.2824
ddtttttttttttddd	chr19:51323593-51323850(-)$1	257	229	245	16.5183
cvvvvvvvvvvvvvcc	chrX:140994886-140995168(+)$1	282	80	96	16.8525
fcccrrrrrrrrrccc	chr12:42623919-42624162(-)$1	243	143	159	8.8879
vvvvvvvvvvvvvccc	chr19:45912065-45912318(-)$1	253	218	234	16.5756
eerrrrrrrrreeeee	chr17:7813591-7813856(+)$1	265	63	79	8.8174
ddvvvvvvvvvvvvvd	chr19:45911721-45911966(-)$1	245	210	226	16.0620
ffssssssssssffff	chr13:25008728-25008988(-)$1	260	150	166	12.2027
ff^^^^^^^^^^^^^^	chr2:101622709-101622971(+)$1	262	6	22	10.9959
eerrrrrrrrreeeee	chr6:29599230-29599479(-)$1	249	91	107	8.8174
buuuuuuuuuuuubbg	chr9:111848180-111848508(-)$1	328	82	98	16.8779
guuuuuuuuuuuuggg	chr1:180042817-180043116(+)$1	299	202	218	17.2602
eerrrrrrrrreeeee	chr2:27558094-27558368(-)$1	274	150	166	8.8174
ff^^^^^^^^^^^^^^	chr13:39586882-39587252(-)$1	370	140	156	10.9959
cctttttttttttccc	chr19:38948391-38948797(+)$1	406	155	171	17.1271
cccssssssssssccc	chr12:117289535-117289839(+)$1	304	10	26	12.5206
eesssssssssseeee	chr9:98236302-98236610(-)$1	308	55	71	12.5402
ggassssssssssa]g	chr6:33286459-33286761(-)$1	302	165	181	12.5527
bbuuuuuuuuuuuubb	chr17:38209821-38210103(-)$1	282	110	126	16.6212
wwwwwwwwwwwwwwhh	chr3:99568465-99568757(+)$1	292	174	190	16.3654
euuuuuuuuuuuueee	chr1:10342218-10342485(+)$1	267	36	52	17.4576
yyyyyyyyyyyyyyyy	chr19:48700362-48700680(-)$1	318	260	276	14.9057
eettttttttttteee	chr12:76448737-76448971(-)$1	234	128	144	16.8960
ddssssssssssdddd	chr17:7369630-7369951(-)$1	321	244	260	12.0744
ddtttttttttttddd	chr16:47709342-47709603(+)$1	261	8	24	16.5183
fuuuuuuuuuuuufff	chr4:77068674-77068955(-)$1	281	21	37	17.2171
dduuuuuuuuuuuudd	chr12:49434655-49434907(-)$1	252	26	42	17.0195
hhttttttttttthhh	chr5:112227438-112227706(-)$1	268	169	185	15.6272
ffssssssssssffff	chr10:102283774-102284050(-)$1	276	41	57	12.2027
^^^^^^^^^^^^^ddd	chr19:14274089-14274388(-)$1	299	105	121	10.9486
fvvvvvvvvvvvvvff	chrX:70352554-70352802(+)$1	248	159	175	16.5803
cctttttttttttccc	chr1:176137729-176138051(-)$1	322	26	42	17.1271
^^^^^^^^^^^^^^cc	chr12:57115115-57115364(-)$1	249	94	110	11.4723
cctttttttttttccc	chr1:144871732-144872025(-)$1	293	50	66	17.1271
dxxxxxxxxxxxxxxx	chr6:43151926-43152177(+)$1	251	64	80	12.9986
fwwwwwwwwwwwwwwf	chr12:57113955-57114182(-)$1	227	134	150	16.7721
wwwwwwwwwwwwweee	chrX:21863302-21863595(+)$1	293	219	235	16.6344
ee^^^^^^^^^^^^^^	chr11:85671684-85671975(-)$1	291	5	21	11.0136
fuuuuuuuuuuuufff	chr12:57114238-57114497(-)$1	259	82	98	17.2171
eettttttttttteee	chr1:44442979-44443300(+)$1	321	300	316	16.8960
iitttttttttttiii	chr1:154143862-154144135(-)$1	273	82	98	16.5042
euuuuuuuuuuuueee	chr1:149895803-149896065(-)$1	262	32	48	17.4576
ffxxxxxxxxxxxxxx	chr19:49840793-49841087(-)$1	294	111	127	12.6926
ccuuuuuuuuuuuucc	chr19:2248284-2248566(+)$1	282	245	261	17.5027
[bbssssssssssbb2	chr2:74599930-74600252(-)$1	322	170	186	11.3006

#otherMatches

#Seq PSSM
ACUACUUUCCUCAGAG	chrX:140994816-140995070(+)$1	254	106	122	16.5756
UGUCCUUGGCCUCGGG	chr19:42401903-42402191(+)$1	288	169	185	12.2027
guaucuuucucuuaca	chr16:68324077-68324405(+)$1	328	130	146	11.2046
UGGCUCUCAAGAACAG	chr5:140698599-140698866(-)$1	267	189	205	16.6340
gcuuuuuguccucugc	chr22:18276456-18276725(-)$1	269	31	47	16.6212
gcuucuucuucugcuu	chr2:70129719-70129974(+)$1	255	107	123	11.9370
CCCCAGCACCCCGGCC	chr16:30734109-30734393(+)$1	284	264	280	12.0744
gcuuucuuAAUUGCAU	chr7:141464567-141464841(+)$1	274	135	151	11.8358
GCUCUGCCCACGUGCU	chr5:176917484-176917744(-)$1	260	215	231	8.8174
GCAAACCAAAcagccc	chr19:57742855-57743216(+)$1	361	262	278	11.9151
CUGUUUCCUUCGUCUG	chr1:109816492-109816802(+)$1	310	55	71	15.7917
UGUUGUUUCCUCUGGU	chr1:14107383-14107661(+)$1	278	155	171	16.2824
CUUCCCACACCCUGGC	chr19:51323593-51323850(-)$1	257	229	245	16.5183
CACUACUUUCCUCAGA	chrX:140994886-140995168(+)$1	282	80	96	16.8525
uagcgcgaucuuggcu	chr12:42623919-42624162(-)$1	243	143	159	8.8879
UCUUUCUCUUUUUGGU	chr19:45912065-45912318(-)$1	253	218	234	16.5756
ucuguccaucugaugc	chr17:7813591-7813856(+)$1	265	63	79	8.8174
UUUUUCUUCUUCCCUG	chr19:45911721-45911966(-)$1	245	210	226	16.0620
UCUGCUUUACCUGAGG	chr13:25008728-25008988(-)$1	260	150	166	12.2027
GAAAAUAGAAUGCCCA	chr2:101622709-101622971(+)$1	262	6	22	10.9959
CUCACCCCUUAGGUUG	chr6:29599230-29599479(-)$1	249	91	107	8.8174
GUUUUUCCUUUGUCUG	chr9:111848180-111848508(-)$1	328	82	98	16.8779
GUAUAUCUACAACCAG	chr1:180042817-180043116(+)$1	299	202	218	17.2602
GACUUUCCCCCUCUUG	chr2:27558094-27558368(-)$1	274	150	166	8.8174
AGCACCUUUCCCCCUC	chr13:39586882-39587252(-)$1	370	140	156	10.9959
auucuuccuccauguc	chr19:38948391-38948797(+)$1	406	155	171	17.1271
ucuaaaaaaaaaaaga	chr12:117289535-117289839(+)$1	304	10	26	12.5206
GGACCCUGUCUGCCCA	chr9:98236302-98236610(-)$1	308	55	71	12.5402
CUCUCACUUCCCUGCA	chr6:33286459-33286761(-)$1	302	165	181	12.5527
GCUUAAAUCUUCCCGC	chr17:38209821-38210103(-)$1	282	110	126	16.6212
UCCUUAAUCUUAUUGU	chr3:99568465-99568757(+)$1	292	174	190	16.3654
UGUCUUGGUCUUGGCG	chr1:10342218-10342485(+)$1	267	36	52	17.4576
UCCUCCCCCUCCCCCC	chr19:48700362-48700680(-)$1	318	260	276	14.9057
UUGAAAGAUAUUAAAG	chr12:76448737-76448971(-)$1	234	128	144	16.8960
UGUCCUCAACUUCAUC	chr17:7369630-7369951(-)$1	321	244	260	12.0744
CCACAAAUCUCAAGGU	chr16:47709342-47709603(+)$1	261	8	24	16.5183
UCUUAAACUGUUUGGA	chr4:77068674-77068955(-)$1	281	21	37	17.2171
GGAAUUCCACACUACC	chr12:49434655-49434907(-)$1	252	26	42	17.0195
CUUCUCUUCUUCUAGU	chr5:112227438-112227706(-)$1	268	169	185	15.6272
UGCCUCUGACUCUAAC	chr10:102283774-102284050(-)$1	276	41	57	12.2027
ucucuccucccucucg	chr19:14274089-14274388(-)$1	299	105	121	10.9486
CAGCCCUUCUUAUCGC	chrX:70352554-70352802(+)$1	248	159	175	16.5803
GAUAAUAUGAUUUUCU	chr1:176137729-176138051(-)$1	322	26	42	17.1271
UCUUUAUCUCCUUUUG	chr12:57115115-57115364(-)$1	249	94	110	11.4723
GGGAAUGCUUUUACCU	chr1:144871732-144872025(-)$1	293	50	66	17.1271
UUUUUUUUCUUUUCUC	chr6:43151926-43152177(+)$1	251	64	80	12.9986
UUAUCAUUAUCCUUUA	chr12:57113955-57114182(-)$1	227	134	150	16.7721
UUUAAAUAACUAUCGA	chrX:21863302-21863595(+)$1	293	219	235	16.6344
UUAACAAUCCAUUUUC	chr11:85671684-85671975(-)$1	291	5	21	11.0136
AUUUUCCCAUUUCUCU	chr12:57114238-57114497(-)$1	259	82	98	17.2171
UGUAUCUCCCUCUCAC	chr1:44442979-44443300(+)$1	321	300	316	16.8960
GGUUCAAUUCACGUCU	chr1:154143862-154144135(-)$1	273	82	98	16.5042
ACccuuuuuucuauau	chr1:149895803-149896065(-)$1	262	32	48	17.4576
CGUCUAUUUCUUUCUC	chr19:49840793-49841087(-)$1	294	111	127	12.6926
UCCCCCAACCAACUGA	chr19:2248284-2248566(+)$1	282	245	261	17.5027
UGUCCAGACCACAACU	chr2:74599930-74600252(-)$1	322	170	186	11.3006

#DB
.............)))	chrX:140994816-140995070(+)$1	1	106	122	16.5756
((..........))))	chr19:42401903-42402191(+)$1	1	169	185	12.2027
.............)))	chr16:68324077-68324405(+)$1	1	130	146	11.2046
((...........)))	chr5:140698599-140698866(-)$1	1	189	205	16.6340
((............))	chr22:18276456-18276725(-)$1	1	31	47	16.6212
((..........))..	chr2:70129719-70129974(+)$1	1	107	123	11.9370
((..........))))	chr16:30734109-30734393(+)$1	1	264	280	12.0744
((..........))).	chr7:141464567-141464841(+)$1	1	135	151	11.8358
((.........)))))	chr5:176917484-176917744(-)$1	1	215	231	8.8174
((..........))..	chr19:57742855-57743216(+)$1	1	262	278	11.9151
((.............)	chr1:109816492-109816802(+)$1	1	55	71	15.7917
.............)))	chr1:14107383-14107661(+)$1	1	155	171	16.2824
((...........)))	chr19:51323593-51323850(-)$1	1	229	245	16.5183
(.............))	chrX:140994886-140995168(+)$1	1	80	96	16.8525
((((.........)))	chr12:42623919-42624162(-)$1	1	143	159	8.8879
.............)))	chr19:45912065-45912318(-)$1	1	218	234	16.5756
((.........)))))	chr17:7813591-7813856(+)$1	1	63	79	8.8174
((.............)	chr19:45911721-45911966(-)$1	1	210	226	16.0620
((..........))))	chr13:25008728-25008988(-)$1	1	150	166	12.2027
((..............	chr2:101622709-101622971(+)$1	1	6	22	10.9959
((.........)))))	chr6:29599230-29599479(-)$1	1	91	107	8.8174
(............)))	chr9:111848180-111848508(-)$1	1	82	98	16.8779
(............)))	chr1:180042817-180043116(+)$1	1	202	218	17.2602
((.........)))))	chr2:27558094-27558368(-)$1	1	150	166	8.8174
((..............	chr13:39586882-39587252(-)$1	1	140	156	10.9959
((...........)))	chr19:38948391-38948797(+)$1	1	155	171	17.1271
(((..........)))	chr12:117289535-117289839(+)$1	1	10	26	12.5206
((..........))))	chr9:98236302-98236610(-)$1	1	55	71	12.5402
(((..........).)	chr6:33286459-33286761(-)$1	1	165	181	12.5527
((............))	chr17:38209821-38210103(-)$1	1	110	126	16.6212
..............))	chr3:99568465-99568757(+)$1	1	174	190	16.3654
(............)))	chr1:10342218-10342485(+)$1	1	36	52	17.4576
................	chr19:48700362-48700680(-)$1	1	260	276	14.9057
((...........)))	chr12:76448737-76448971(-)$1	1	128	144	16.8960
((..........))))	chr17:7369630-7369951(-)$1	1	244	260	12.0744
((...........)))	chr16:47709342-47709603(+)$1	1	8	24	16.5183
(............)))	chr4:77068674-77068955(-)$1	1	21	37	17.2171
((............))	chr12:49434655-49434907(-)$1	1	26	42	17.0195
((...........)))	chr5:112227438-112227706(-)$1	1	169	185	15.6272
((..........))))	chr10:102283774-102284050(-)$1	1	41	57	12.2027
.............)))	chr19:14274089-14274388(-)$1	1	105	121	10.9486
(.............))	chrX:70352554-70352802(+)$1	1	159	175	16.5803
((...........)))	chr1:176137729-176138051(-)$1	1	26	42	17.1271
..............))	chr12:57115115-57115364(-)$1	1	94	110	11.4723
((...........)))	chr1:144871732-144872025(-)$1	1	50	66	17.1271
(...............	chr6:43151926-43152177(+)$1	1	64	80	12.9986
(..............)	chr12:57113955-57114182(-)$1	1	134	150	16.7721
.............)))	chrX:21863302-21863595(+)$1	1	219	235	16.6344
((..............	chr11:85671684-85671975(-)$1	1	5	21	11.0136
(............)))	chr12:57114238-57114497(-)$1	1	82	98	17.2171
((...........)))	chr1:44442979-44443300(+)$1	1	300	316	16.8960
((...........)))	chr1:154143862-154144135(-)$1	1	82	98	16.5042
(............)))	chr1:149895803-149896065(-)$1	1	32	48	17.4576
((..............	chr19:49840793-49841087(-)$1	1	111	127	12.6926
((............))	chr19:2248284-2248566(+)$1	1	245	261	17.5027
.((..........)).	chr2:74599930-74600252(-)$1	1	170	186	11.3006

#PSSM
f : 0.19	e : 0.17	d : 0.12	c : 0.12	b : 0.10	v : 0.05	^ : 0.05	g : 0.05	w : 0.03	y : 0.01	h : 0.01	i : 0.01	[ : 0.01	
e : 0.14	c : 0.12	f : 0.10	b : 0.10	d : 0.10	u : 0.10	v : 0.08	^ : 0.05	w : 0.05	g : 0.03	y : 0.01	h : 0.01	x : 0.01	i : 0.01	
t : 0.17	u : 0.17	s : 0.16	v : 0.12	^ : 0.10	r : 0.07	w : 0.05	c : 0.03	x : 0.03	a : 0.01	y : 0.01	b : 0.01	
s : 0.21	t : 0.17	u : 0.17	v : 0.12	^ : 0.10	r : 0.07	w : 0.05	x : 0.03	c : 0.01	y : 0.01	
s : 0.21	t : 0.17	u : 0.17	v : 0.12	^ : 0.10	r : 0.08	w : 0.05	x : 0.03	y : 0.01	
s : 0.21	t : 0.17	u : 0.17	v : 0.12	^ : 0.10	r : 0.08	w : 0.05	x : 0.03	y : 0.01	
s : 0.21	t : 0.17	u : 0.17	v : 0.12	^ : 0.10	r : 0.08	w : 0.05	x : 0.03	y : 0.01	
s : 0.21	t : 0.17	u : 0.17	v : 0.12	^ : 0.10	r : 0.08	w : 0.05	x : 0.03	y : 0.01	
s : 0.21	t : 0.17	u : 0.17	v : 0.12	^ : 0.10	r : 0.08	w : 0.05	x : 0.03	y : 0.01	
s : 0.21	t : 0.17	u : 0.17	v : 0.12	^ : 0.10	r : 0.08	w : 0.05	x : 0.03	y : 0.01	
s : 0.21	t : 0.17	u : 0.17	v : 0.12	^ : 0.10	r : 0.08	w : 0.05	x : 0.03	y : 0.01	
s : 0.21	t : 0.17	u : 0.17	v : 0.12	^ : 0.10	e : 0.07	w : 0.05	x : 0.03	r : 0.01	y : 0.01	
t : 0.17	u : 0.17	v : 0.12	^ : 0.10	e : 0.08	f : 0.05	s : 0.05	w : 0.05	b : 0.03	d : 0.03	x : 0.03	c : 0.01	r : 0.01	y : 0.01	
e : 0.19	c : 0.14	f : 0.08	d : 0.08	u : 0.07	b : 0.07	v : 0.07	^ : 0.07	g : 0.05	w : 0.03	x : 0.03	a : 0.01	y : 0.01	h : 0.01	i : 0.01	
c : 0.19	e : 0.19	f : 0.10	d : 0.10	b : 0.07	g : 0.05	^ : 0.05	v : 0.03	h : 0.03	x : 0.03	4 : 0.01	3 : 0.01	] : 0.01	y : 0.01	w : 0.01	i : 0.01	
e : 0.19	c : 0.17	f : 0.12	d : 0.12	g : 0.08	b : 0.05	^ : 0.05	h : 0.03	x : 0.03	4 : 0.01	: : 0.01	3 : 0.01	y : 0.01	i : 0.01	2 : 0.01	

#score	799.4664115475176
#seq	56
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_UTR_m2_run1.txt

#BEAR
e^^^^^^^^^^^^^^^^^^^^^^eeeee	chr1:214161494-214161749(+)$1	255	178	206	36.2607
^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr12:56736521-56736770(-)$1	249	207	235	36.6209
ff^^^^^^^^^^^^^^^^^^^^^fffff	chr14:21463006-21463315(+)$1	309	193	221	34.5823
dddd^^^^^^^^^^^^^^^^^^^dddd:	chr5:92918948-92919231(+)$1	283	2	30	32.7514
[bb^^^^^^^^^^^^^^^^^^^bbccc5	chr7:100164293-100164562(+)$1	269	150	178	31.7163
dddd^^^^^^^^^^^^^^^^^^^dddd3	chr1:26148079-26148381(+)$1	302	158	186	33.5980
dddd^^^^^^^^^^^^^^^^^^^dddd8	chr11:2159659-2159863(-)$1	204	98	126	33.1814
^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr2:105964407-105964618(+)$1	211	113	141	36.6209
^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr2:105964418-105964630(+)$1	212	102	130	36.6209
eeee^^^^^^^^^^^^^^^^^^eeeee:	chr15:65809086-65809350(-)$1	264	76	104	31.2447
^^^^^^^^^^^^^^^^^^^^^^^ggggg	chr2:204308608-204308884(-)$1	276	160	188	36.4140
dddd^^^^^^^^^^^^^^^^^^^dddd:	chr5:41918341-41918666(+)$1	325	202	230	32.7514
^^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr11:57585704-57585922(+)$1	218	176	204	35.8020
^^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr2:240898928-240899282(-)$1	354	237	265	35.8020
d^^^^^^^^^^^^^^^^^^^^^^ddddc	chr12:66218348-66218617(+)$1	269	90	118	36.1485
^^^^^^^^^^^^^^^^^^^^^^^fffff	chr19:18474812-18475067(+)$1	255	150	178	35.8431
ff^^^^^^^^^^^^^^^^^^^^^fffff	chr14:21463115-21463376(+)$1	261	84	112	34.5823
eee^^^^^^^^^^^^^^^^^^^^eeeee	chr20:43536199-43536448(+)$1	249	102	130	34.7252
^^^^^^^^^^^^^^^^^^^^^^^fffff	chr5:92919087-92919326(+)$1	239	190	218	35.8431
e^^^^^^^^^^^^^^^^^^^^^^eeeee	chr11:58387728-58388009(+)$1	281	53	81	36.2607
c^^^^^^^^^^^^^^^^^^^^^^ccc]c	chr4:151502969-151503238(-)$1	269	11	39	36.1434
dddd^^^^^^^^^^^^^^^^^^^dddd:	chr11:2159687-2159892(-)$1	205	127	155	32.7514
[ccc^^^^^^^^^^^^^^^^^^^cccff	chr4:71655654-71656004(+)$1	350	181	209	33.5647
gg^^^^^^^^^^^^^^^^^^^^^ggggg	chr11:57585396-57585640(+)$1	244	60	88	35.2826
gg^^^^^^^^^^^^^^^^^^^^^ggggg	chr11:57585440-57585689(+)$1	249	16	44	35.2826
^^^^^^^^^^^^^^^^^^^^^^^dddd:	chr2:182781434-182781696(+)$1	262	76	104	35.7706
ea^^^^^^^^^^^^^^^^^^^^^a]eee	chr11:6504560-6504830(+)$1	270	149	177	35.6461
^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr19:18477069-18477338(+)$1	269	205	233	36.6209
ddd^^^^^^^^^^^^^^^^^^^^dddd]	chr17:6905498-6905788(-)$1	290	143	171	34.6851
^^^^^^^^^^^^^^^^^^^^^^^ccc]d	chr19:4390247-4390621(-)$1	374	167	195	36.3616
gggg^^^^^^^^^^^^^^^^^^^ggggg	chr4:73941051-73941326(-)$1	275	13	41	33.1758
d^^^^^^^^^^^^^^^^^^^^^^ddddd	chr2:85548072-85548332(-)$1	260	127	155	35.9999
^^^^^^^^^^^^^^^^^^^^^^^ccc]c	chrX:122735096-122735351(-)$1	255	124	152	36.5101
^^^^^^^^^^^^^^^^^^^^^^^ccc]c	chrX:122735151-122735440(-)$1	289	213	241	36.5101
eeeee^^^^^^^^^^^^^^^^^^eeeee	chr19:48957994-48958276(+)$1	282	199	227	32.1338
ee^^^^^^^^^^^^^^^^^^^^^eeeee	chr6:28123584-28123866(+)$1	282	153	181	35.6061
ccc^^^^^^^^^^^^^^^^^^^^ccc22	chr3:52003149-52003417(-)$1	268	122	150	34.3591
h^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr17:40994801-40995097(+)$1	296	25	53	35.0774
(dddd^^^^^^^^^^^^^^^^^^dddd6	chr4:74269944-74270159(+)$1	215	37	65	31.3741
^^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr2:85547884-85548118(-)$1	234	100	128	35.8020
eeeee^^^^^^^^^^^^^^^^^^eeeee	chr19:48958112-48958526(+)$1	414	81	109	32.1338
eee^^^^^^^^^^^^^^^^^^^^eeeee	chr20:43536126-43536399(+)$1	273	175	203	34.7252
[a^^^^^^^^^^^^^^^^^^^^^a]ccc	chr19:54377739-54377979(+)$1	240	190	218	35.5031
^^^^^^^^^^^^^^^^^^^^^^^dddd3	chr15:37390397-37390693(-)$1	296	258	286	36.6172
bb^^^^^^^^^^^^^^^^^^^^^bb22h	chr1:85784817-85785097(-)$1	280	82	110	33.6411
^^^^^^^^^^^^^^^^^^^^^^^bbfff	chr10:63955111-63955465(-)$1	354	80	108	35.5103
^^^^^^^^^^^^^^^^^^^^^^^hhhhh	chr12:19353460-19353742(+)$1	282	29	57	35.8020
gccc^^^^^^^^^^^^^^^^^^^ccc]g	chr20:251449-251768(-)$1	319	224	252	33.7280
^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr2:105964430-105964696(+)$1	266	90	118	36.6209
c^^^^^^^^^^^^^^^^^^^^^^^ccc2	chr1:61925550-61925799(+)$1	249	86	114	35.6564
f[ccc^^^^^^^^^^^^^^^^^^cccff	chr10:72182038-72182261(+)$1	223	145	173	31.9838
^^^^^^^^^^^^^^^^^^^^^^^dddd]	chr19:18670656-18670932(+)$1	276	153	181	36.6298
^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr4:89628905-89629192(+)$1	287	117	145	36.6209
dddd^^^^^^^^^^^^^^^^^^^dddd:	chr11:2159667-2159881(-)$1	214	116	144	32.7514
ggg^^^^^^^^^^^^^^^^^^^^ggggg	chr9:125636270-125636526(-)$1	256	134	162	34.3254
dddd^^^^^^^^^^^^^^^^^^^dddd:	chr11:2159663-2159867(-)$1	204	102	130	32.7514
d^^^^^^^^^^^^^^^^^^^^^^ddddc	chr12:66218417-66218697(+)$1	280	21	49	36.1485
^^^^^^^^^^^^^^^^^^^^^^^ccc33	chr5:114858505-114858772(-)$1	267	124	152	36.4823
a^^^^^^^^^^^^^^^^^^^^^^a22gg	chr19:54377703-54377939(+)$1	236	66	94	35.4675
dddd^^^^^^^^^^^^^^^^^^^dddd8	chr11:2159639-2159859(-)$1	220	94	122	33.1814
eeeee^^^^^^^^^^^^^^^^^^eeeee	chr7:92242693-92242926(-)$1	233	59	87	32.1338
iiii^^^^^^^^^^^^^^^^^^^iiiii	chr17:36891249-36891529(-)$1	280	208	236	32.9690
:ccc^^^^^^^^^^^^^^^^^^^ccc::	chr9:125636466-125636757(-)$1	291	90	118	31.0879

#otherMatches

#Seq PSSM
UCCAAUUAUCAUAUUCAUCACCCGCAAG	chr1:214161494-214161749(+)$1	255	178	206	36.2607
CUCCUCCCCUACUCUGCCCCUAAGCUGG	chr12:56736521-56736770(-)$1	249	207	235	36.6209
GAUUAUGUAAUGCCUAUUUCUUUUUAGG	chr14:21463006-21463315(+)$1	309	193	221	34.5823
CCCGUUUAAACGCAUUCAAUUUUUGGGu	chr5:92918948-92919231(+)$1	283	2	30	32.7514
UGUCCCUCUACCUAAUUCUCUUACCAGU	chr7:100164293-100164562(+)$1	269	150	178	31.7163
UUGUCUUCAUUUCCUACUCCCUCGCAAC	chr1:26148079-26148381(+)$1	302	158	186	33.5980
uaucucugccccccucuauccuuGAUAC	chr11:2159659-2159863(-)$1	204	98	126	33.1814
uuuaauucuccuuccuCCUUACUGUAGA	chr2:105964407-105964618(+)$1	211	113	141	36.6209
uuuaauucuccuuccuCCUUACUGUAGA	chr2:105964418-105964630(+)$1	212	102	130	36.6209
UCUUCUCACACACUUUUCUUCUAAGACU	chr15:65809086-65809350(-)$1	264	76	104	31.2447
ucccucucccuuucccgucacccaggcu	chr2:204308608-204308884(-)$1	276	160	188	36.4140
UCCCUAUCCACCCUCAGCUUUAUGGGAU	chr5:41918341-41918666(+)$1	325	202	230	32.7514
AAUGAGUUUUUUAUAUAAAUAAAGUUUU	chr11:57585704-57585922(+)$1	218	176	204	35.8020
CUCCUUCCUUGUUUUAAGAAUUUGAAAA	chr2:240898928-240899282(-)$1	354	237	265	35.8020
CUCCCCAUCCUCCUUUGCUUUCCGACUG	chr12:66218348-66218617(+)$1	269	90	118	36.1485
cuuuuuuuuuuuuuuuaaauagugcuag	chr19:18474812-18475067(+)$1	255	150	178	35.8431
GAUUAUGUAAUGCCUAUUUCUUUUUAGG	chr14:21463115-21463376(+)$1	261	84	112	34.5823
AAUUCUAUCUUUAUCUGUCUUUUGUUCA	chr20:43536199-43536448(+)$1	249	102	130	34.7252
CUUCUUAUCGUUAUUUUAUACAUAUAUG	chr5:92919087-92919326(+)$1	239	190	218	35.8431
CAUAUGCCUCAUUGUCCUUCCAGGGAGC	chr11:58387728-58388009(+)$1	281	53	81	36.2607
Gucucucccccuccucuccccuccgacc	chr4:151502969-151503238(-)$1	269	11	39	36.1434
uaucucugccccccucuauccuuGAUAC	chr11:2159687-2159892(-)$1	205	127	155	32.7514
UGUGUUUUCCCAGCUCUUACCUUCAUCU	chr4:71655654-71656004(+)$1	350	181	209	33.5647
ACAACCCACCACCCCCUUUACUCGUGCA	chr11:57585396-57585640(+)$1	244	60	88	35.2826
ACAACCCACCACCCCCUUUACUCGUGCA	chr11:57585440-57585689(+)$1	249	16	44	35.2826
UUCUCUCUUUCUCUCUGCUAUUUGAACA	chr2:182781434-182781696(+)$1	262	76	104	35.7706
CCAUUCCUUCAUUCAAACUGCUAGAGAA	chr11:6504560-6504830(+)$1	270	149	177	35.6461
uguuauuuuuuauuuuuauuuuuugaga	chr19:18477069-18477338(+)$1	269	205	233	36.6209
ACAUACAUCUCUAUCCACCUUACUGUUG	chr17:6905498-6905788(-)$1	290	143	171	34.6851
gcccucucaccucuucuuccucucucuc	chr19:4390247-4390621(-)$1	374	167	195	36.3616
UGCUUUCUUUUUGGUUUAUUUGUAGCAA	chr4:73941051-73941326(-)$1	275	13	41	33.1758
CCAGCUCCUUUCCAUCCACCUUCGUAUG	chr2:85548072-85548332(-)$1	260	127	155	35.9999
cuucUUCUCUAUCAAUAUAAUCACUUUG	chrX:122735096-122735351(-)$1	255	124	152	36.5101
cuucUUCUCUAUCAAUAUAAUCACUUUG	chrX:122735151-122735440(-)$1	289	213	241	36.5101
AAAACAUUUCUUUUCUCCUUUUCGUUUU	chr19:48957994-48958276(+)$1	282	199	227	32.1338
GUUACCAUUCCUAGUUUCUUUGUACUUG	chr6:28123584-28123866(+)$1	282	153	181	35.6061
UGUCUUUUCUACCUCUUUCUCUUGCAGU	chr3:52003149-52003417(-)$1	268	122	150	34.3591
CCCUAGCUCUUUUAUUCUACCACGGCUG	chr17:40994801-40995097(+)$1	296	25	53	35.0774
UGCUAAUUUCCCUCCGUUUGUCCUAGCU	chr4:74269944-74270159(+)$1	215	37	65	31.3741
CAGUUAUCCAAUCACCAAAUCCAUGGCU	chr2:85547884-85548118(-)$1	234	100	128	35.8020
AAAACAUUUCUUUUCUCCUUUUCGUUUU	chr19:48958112-48958526(+)$1	414	81	109	32.1338
AAUUCUAUCUUUAUCUGUCUUUUGUUCA	chr20:43536126-43536399(+)$1	273	175	203	34.7252
UCUUCUUCCUUCCCUUUCCUCUUGCUGU	chr19:54377739-54377979(+)$1	240	190	218	35.5031
uccugcgcccccucccccuucccGGGUU	chr15:37390397-37390693(-)$1	296	258	286	36.6172
guuuuucacuuuuccuuucuuuugcuuc	chr1:85784817-85785097(-)$1	280	82	110	33.6411
cuuccuuccuuccuuccuucauucccuc	chr10:63955111-63955465(-)$1	354	80	108	35.5103
UCAUUCCUAGUAGAUCAUACCUUGGAGA	chr12:19353460-19353742(+)$1	282	29	57	35.8020
UGCUAUUCCUUUUUUACCAAUAAAGCUG	chr20:251449-251768(-)$1	319	224	252	33.7280
uuuaauucuccuuccuCCUUACUGUAGA	chr2:105964430-105964696(+)$1	266	90	118	36.6209
auucuuucuuuucuuuuuuauuucuGGU	chr1:61925550-61925799(+)$1	249	86	114	35.6564
AUAGUUCAUCUUCCCAUUCUUUUACUUA	chr10:72182038-72182261(+)$1	223	145	173	31.9838
cccucCCuuccuuccuucuuuucgagau	chr19:18670656-18670932(+)$1	276	153	181	36.6298
uucuccuuccucccuucccuuauuuucu	chr4:89628905-89629192(+)$1	287	117	145	36.6209
uaucucugccccccucuauccuuGAUAC	chr11:2159667-2159881(-)$1	214	116	144	32.7514
UGGAUAACUAUUUCUAAUCAUACUCAGA	chr9:125636270-125636526(-)$1	256	134	162	34.3254
uaucucugccccccucuauccuuGAUAC	chr11:2159663-2159867(-)$1	204	102	130	32.7514
CUCCCCAUCCUCCUUUGCUUUCCGACUG	chr12:66218417-66218697(+)$1	280	21	49	36.1485
cucucucucacucacucacucACAGAUU	chr5:114858505-114858772(-)$1	267	124	152	36.4823
CCCGUUCCCUCUCCAACCUCUUUGUUCU	chr19:54377703-54377939(+)$1	236	66	94	35.4675
uaucucugccccccucuauccuuGAUAC	chr11:2159639-2159859(-)$1	220	94	122	33.1814
AACAGCUUUUCCUUUUUCUCUUACUGUU	chr7:92242693-92242926(-)$1	233	59	87	32.1338
GAAAAACCAAAUAUACAUACUUAUUUUC	chr17:36891249-36891529(-)$1	280	208	236	32.9690
CCAGUAUCUUCCUAUAUCUCAAUCUGUC	chr9:125636466-125636757(-)$1	291	90	118	31.0879

#DB
(......................)))))	chr1:214161494-214161749(+)$1	1	178	206	36.2607
.......................)))))	chr12:56736521-56736770(-)$1	1	207	235	36.6209
((.....................)))))	chr14:21463006-21463315(+)$1	1	193	221	34.5823
((((...................)))).	chr5:92918948-92919231(+)$1	1	2	30	32.7514
.((...................))))).	chr7:100164293-100164562(+)$1	1	150	178	31.7163
((((...................)))).	chr1:26148079-26148381(+)$1	1	158	186	33.5980
((((...................)))).	chr11:2159659-2159863(-)$1	1	98	126	33.1814
.......................)))))	chr2:105964407-105964618(+)$1	1	113	141	36.6209
.......................)))))	chr2:105964418-105964630(+)$1	1	102	130	36.6209
((((..................))))).	chr15:65809086-65809350(-)$1	1	76	104	31.2447
.......................)))))	chr2:204308608-204308884(-)$1	1	160	188	36.4140
((((...................)))).	chr5:41918341-41918666(+)$1	1	202	230	32.7514
.......................)))))	chr11:57585704-57585922(+)$1	1	176	204	35.8020
.......................)))))	chr2:240898928-240899282(-)$1	1	237	265	35.8020
(......................))))(	chr12:66218348-66218617(+)$1	1	90	118	36.1485
.......................)))))	chr19:18474812-18475067(+)$1	1	150	178	35.8431
((.....................)))))	chr14:21463115-21463376(+)$1	1	84	112	34.5823
(((....................)))))	chr20:43536199-43536448(+)$1	1	102	130	34.7252
.......................)))))	chr5:92919087-92919326(+)$1	1	190	218	35.8431
(......................)))))	chr11:58387728-58388009(+)$1	1	53	81	36.2607
(......................))).)	chr4:151502969-151503238(-)$1	1	11	39	36.1434
((((...................)))).	chr11:2159687-2159892(-)$1	1	127	155	32.7514
.(((...................)))))	chr4:71655654-71656004(+)$1	1	181	209	33.5647
((.....................)))))	chr11:57585396-57585640(+)$1	1	60	88	35.2826
((.....................)))))	chr11:57585440-57585689(+)$1	1	16	44	35.2826
.......................)))).	chr2:182781434-182781696(+)$1	1	76	104	35.7706
((.....................).)))	chr11:6504560-6504830(+)$1	1	149	177	35.6461
.......................)))))	chr19:18477069-18477338(+)$1	1	205	233	36.6209
(((....................)))).	chr17:6905498-6905788(-)$1	1	143	171	34.6851
.......................))).)	chr19:4390247-4390621(-)$1	1	167	195	36.3616
((((...................)))))	chr4:73941051-73941326(-)$1	1	13	41	33.1758
(......................)))))	chr2:85548072-85548332(-)$1	1	127	155	35.9999
.......................))).)	chrX:122735096-122735351(-)$1	1	124	152	36.5101
.......................))).)	chrX:122735151-122735440(-)$1	1	213	241	36.5101
(((((..................)))))	chr19:48957994-48958276(+)$1	1	199	227	32.1338
((.....................)))))	chr6:28123584-28123866(+)$1	1	153	181	35.6061
(((....................)))..	chr3:52003149-52003417(-)$1	1	122	150	34.3591
(......................)))))	chr17:40994801-40995097(+)$1	1	25	53	35.0774
.((((..................)))).	chr4:74269944-74270159(+)$1	1	37	65	31.3741
.......................)))))	chr2:85547884-85548118(-)$1	1	100	128	35.8020
(((((..................)))))	chr19:48958112-48958526(+)$1	1	81	109	32.1338
(((....................)))))	chr20:43536126-43536399(+)$1	1	175	203	34.7252
.(.....................).)))	chr19:54377739-54377979(+)$1	1	190	218	35.5031
.......................)))).	chr15:37390397-37390693(-)$1	1	258	286	36.6172
((.....................))..)	chr1:85784817-85785097(-)$1	1	82	110	33.6411
.......................)))))	chr10:63955111-63955465(-)$1	1	80	108	35.5103
.......................)))))	chr12:19353460-19353742(+)$1	1	29	57	35.8020
((((...................))).)	chr20:251449-251768(-)$1	1	224	252	33.7280
.......................)))))	chr2:105964430-105964696(+)$1	1	90	118	36.6209
(.......................))).	chr1:61925550-61925799(+)$1	1	86	114	35.6564
(.(((..................)))))	chr10:72182038-72182261(+)$1	1	145	173	31.9838
.......................)))).	chr19:18670656-18670932(+)$1	1	153	181	36.6298
.......................)))))	chr4:89628905-89629192(+)$1	1	117	145	36.6209
((((...................)))).	chr11:2159667-2159881(-)$1	1	116	144	32.7514
(((....................)))))	chr9:125636270-125636526(-)$1	1	134	162	34.3254
((((...................)))).	chr11:2159663-2159867(-)$1	1	102	130	32.7514
(......................))))(	chr12:66218417-66218697(+)$1	1	21	49	36.1485
.......................)))..	chr5:114858505-114858772(-)$1	1	124	152	36.4823
(......................)..))	chr19:54377703-54377939(+)$1	1	66	94	35.4675
((((...................)))).	chr11:2159639-2159859(-)$1	1	94	122	33.1814
(((((..................)))))	chr7:92242693-92242926(-)$1	1	59	87	32.1338
((((...................)))))	chr17:36891249-36891529(-)$1	1	208	236	32.9690
.(((...................)))..	chr9:125636466-125636757(-)$1	1	90	118	31.0879

#PSSM
^ : 0.33	d : 0.19	e : 0.15	g : 0.07	f : 0.04	[ : 0.04	c : 0.04	h : 0.01	( : 0.01	b : 0.01	a : 0.01	i : 0.01	: : 0.01	
^ : 0.47	d : 0.15	e : 0.11	c : 0.06	g : 0.06	f : 0.03	b : 0.03	a : 0.03	[ : 0.01	i : 0.01	
^ : 0.60	d : 0.15	e : 0.09	c : 0.07	g : 0.03	b : 0.01	i : 0.01	
^ : 0.69	d : 0.14	e : 0.06	c : 0.06	g : 0.01	i : 0.01	
^ : 0.92	e : 0.04	d : 0.01	c : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.96	b : 0.01	e : 0.01	
d : 0.25	e : 0.23	c : 0.15	g : 0.07	h : 0.07	f : 0.06	b : 0.04	a : 0.04	^ : 0.01	i : 0.01	
d : 0.25	e : 0.23	c : 0.19	g : 0.07	h : 0.07	f : 0.06	] : 0.03	b : 0.03	2 : 0.01	i : 0.01	
e : 0.25	d : 0.25	c : 0.20	f : 0.07	g : 0.07	h : 0.07	2 : 0.03	i : 0.01	
e : 0.25	d : 0.25	f : 0.11	g : 0.09	h : 0.07	] : 0.07	c : 0.04	2 : 0.03	3 : 0.01	i : 0.01	: : 0.01	
e : 0.23	: : 0.12	f : 0.11	g : 0.11	h : 0.09	c : 0.09	3 : 0.04	8 : 0.03	] : 0.03	d : 0.03	2 : 0.03	5 : 0.01	6 : 0.01	i : 0.01	

#score	2188.5013143058204
#seq	63
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_UTR_m2_run1.txt

#BEAR
a!!dddd####gggggggooooooggggggg4444ddd	chr1:224492605-224492928(-)$1	323	59	97	14.4230
eeee::dddd!!a!!bboooooobb22a22ddddeeee	chr11:129992252-129992501(+)$1	249	64	102	12.8454
c[bb[ccc"""bb[bbmmmmbb]bb333cccbb]ccc3	chr1:144902918-144903225(-)$1	307	47	85	11.8748
iiiiiiiii!!ffffffooooooffffff22iiiiiii	chr15:44093807-44094111(+)$1	304	1	39	13.7397
""ccc[ccc"""bbrrrrrrrrrbb22ccc]ccceeee	chr19:46191601-46191865(-)$1	264	92	130	13.3765
ee####bb####dddd!!annnnna22dddd333bb33	chr9:134348854-134349123(+)$1	269	123	161	12.7455
"dddd[ccc[gggggggooooooggggggg333ccc]d	chr22:20106561-20106772(+)$1	211	136	174	14.2578
::ggggggg!!bb!!bb[aooooooa]bb333bb22gg	chr1:27105613-27105897(+)$1	284	105	143	12.0385
gga[bb[ccc"""ccc[aooooooa]ccc]ccc22bb2	chr16:56642445-56642697(+)$1	252	111	149	15.2262
effffffccc[ccc[cccnnnnnccc]cccccc]ffff	chr17:38788445-38788720(-)$1	275	156	194	11.4520
cc"""ddddccc"""bboooooobb4444ccc]dddd3	chr17:37054564-37054879(+)$1	315	81	119	16.1582
=========$$$$$ddddllldddd22==========:	chr8:117669353-117669638(-)$1	285	243	281	12.2370
ddd!!bb[ccc[cccooooooccccccbb]dddd]ggg	chr7:128407592-128407810(+)$1	218	155	193	11.6888
c!!ffffff[dddd[bboooooobb]dddd]ffffffc	chr5:179149838-179150120(+)$1	282	93	131	13.4134
ccc"""eeeee!!cccooooooccc22eeeee333ccc	chr1:28564319-28564605(+)$1	286	136	174	15.3084
hhh[bb[ccc$$$$$bboooooobb4444ccc22bb33	chr14:35522489-35522758(+)$1	269	78	116	15.3107
b$$$$$bb[ccc####aooooooa4444ccc]bb]bb]	chr17:28612303-28612599(-)$1	296	135	173	14.9140
======="""eeeee!!aooooooa22eeeee888888	chr1:150192894-150193164(-)$1	270	174	212	13.0167
f"""===============mmmm===============	chr8:117738155-117738512(-)$1	357	14	52	12.8830
b!!ccc[a"""ddddoooooodddd333a]ccc22bb:	chr19:50002676-50002921(+)$1	245	68	106	14.0928
c!!ffffff[ccc!!bboooooobbcccffffff22cc	chr15:69072648-69072895(-)$1	247	129	167	14.5910
=========!!cccqqqqqqqqccc22===========	chr16:46731315-46731622(+)$1	307	253	291	12.5274
====[ccc####eeeeemmmmeeeee22ccc]======	chr8:124381235-124381467(-)$1	232	183	221	11.8945
ee####cccdddd[cccooooooccc]dddd]ccceee	chr19:1020826-1021194(-)$1	368	239	277	14.1903
bb[ddddccc[ccc[a!!annnnna22accc333ccc]	chr19:11560066-11560330(+)$1	264	128	166	13.3153
d[a!!ccc"""bb"""bbmmmmbb4444bb4444ccc]	chr14:21679568-21679826(-)$1	258	147	185	13.5524
}BBggggggg[ccc[bboooooobb]ccc]ggggggg:	chr12:123741398-123741746(+)$1	348	227	265	12.3698
Fdddd[bb####a!!cccmmmmccc22a333bb]dddd	chr8:48955507-48955775(+)$1	268	108	146	12.4580
iiiiii!!ccc"""cccooooooccc333ccc333iii	chr17:38784979-38785310(-)$1	331	3	41	18.0429
[ggggggg%%%%%%cccooooooccc333ggggggg]b	chr2:121050616-121050981(+)$1	365	102	140	13.4293
cc[a[ccc"""ddddaqqqqqqqqa]ddddccc]a]cc	chr11:68665294-68665571(-)$1	277	195	233	11.0722
h!!cccccc[cccrrrrrrrrrccc22ccc]ccc22hh	chr1:36621826-36622080(+)$1	254	179	217	12.5855
Fdddd!!bb[dddd[bboooooobb]dddd]bb22ddd	chr19:14199905-14200266(-)$1	361	264	302	13.0426
ccc!!ccc!!eeeee!!aooooooa22eeeee22ccc3	chr15:58913569-58913889(-)$1	320	242	280	15.1116
c"""cccccc!!a[cccooooooccca22ccc333ccc	chr19:16301597-16301827(+)$1	230	170	208	17.3947
d[dddd[a"""ccc[bboooooobb22ccc4444a]dd	chr14:55408199-55408505(-)$1	306	85	123	18.1347
!eeeee[bb####cccooooooccc22bb]eeeee444	chr1:151238895-151239166(+)$1	271	55	93	15.1040
ggg!!bb!!ccc[aooooooa]ccc22bbggggggg44	chr17:72205855-72206072(+)$1	217	24	62	13.4952
gg:ggggggg[bb[cccooooooccc]bb22ggggggg	chr8:117861084-117861299(-)$1	215	110	148	14.0272
"""dddd####bb[ccclllccc]bb22dddd]fffff	chr5:180665058-180665330(-)$1	272	174	212	11.4389
eeeeeedddd[ffffffooooooffffffdddd333ee	chr14:21698377-21698625(-)$1	248	180	218	11.8365
=####ccc"""bb!!bboooooobb22bb]ccc22===	chr17:27413441-27413695(-)$1	254	145	183	19.1093
dddd[ccc!!bb!!cccooooooccc22bb333ccc22	chr22:23522694-23522942(+)$1	248	42	80	16.0011
ff[ccc!!bb"""cccnnnnnccc333bb22ccc22ff	chr14:21820710-21821078(-)$1	368	93	131	11.8623
!!ccc[===========oooooo===========]ccc	chrX:16887105-16887392(-)$1	287	186	224	16.3379
b!!bb!!a"""cccqqqqqqqqccc333a22bb22bb]	chr2:197657578-197657852(-)$1	274	76	114	11.5617
cc"""ccc!!gggggggooooooggggggg]ccc333c	chr17:27416878-27417193(-)$1	315	201	239	16.0215
ddd!!ggggggg####annnnna4444ggggggg4444	chr4:56465213-56465437(-)$1	224	89	127	13.1265
h!!ccc####ccc[cccooooooccc22ccc333ccc2	chr11:64537770-64537981(-)$1	211	53	91	18.0938
dddccc[dddd[bb[aooooooabb]ddddccc]dddd	chr19:58898552-58898807(+)$1	255	119	157	12.7698
gggggg"""ccc"""cccnnnnnccc22ccc333gggg	chr5:33458639-33458870(+)$1	231	135	173	14.5151
dd[dddd"""ccc!!bboooooobb22cccdddd22dd	chr3:53263193-53263466(-)$1	273	25	63	16.6861
geeeee"""ccc"""bboooooobb22ccc]eeeee55	chr22:21224524-21224822(+)$1	298	53	91	15.2086
$$$eeeee[a[ccc[bbrrrrrrrrrbbccc]a333ee	chr19:9271358-9271752(+)$1	394	320	358	11.3933
eeeeeeeeee[ccc[bboooooobb22ccc]eeeee::	chr1:156294737-156294980(-)$1	243	109	147	13.2573

#otherMatches

#Seq PSSM
GGAUUCAAAAGAUUCUUCUCUUUUGGAGAGUGAUAUGA	chr1:224492605-224492928(-)$1	323	59	97	14.4230
CUUCAAAGGAGAUGACUACAAUGAGGAGAAUCCUACUG	chr11:129992252-129992501(+)$1	249	64	102	12.8454
UGGAACUGGAAGGGGCUCAGGUGUUACGCAGUCGGCUA	chr1:144902918-144903225(-)$1	307	47	85	11.8748
AUUCUGCUUAAUUUGGGUUGUUUCCUGAAACAAGCGGA	chr15:44093807-44094111(+)$1	304	1	39	13.7397
GCGAGAGGAGGAGGAAUUUAACACCGGUCCACUCUCUG	chr19:46191601-46191865(-)$1	264	92	130	13.3765
CAAGAAAGAAAAGUGACCCCCAUCGACUCACCCCCUGU	chr9:134348854-134349123(+)$1	269	123	161	12.7455
AGGACUCUUUAAGGUUGAGGUUACAACUUUUAUGGGUG	chr22:20106561-20106772(+)$1	211	136	174	14.2578
AAGAAGAGGAAGUAGUUGAAAAUGAUGAGGAGAUAGCC	chr1:27105613-27105897(+)$1	284	105	143	12.0385
UUCAGCUCGCCAUGGAUCCCAACUGCUCCUGCGCCGCC	chr16:56642445-56642697(+)$1	252	111	149	15.2262
CCACCGCCUCAUCAGUGAAAUUCUUAGUGAGAGUGUGG	chr17:38788445-38788720(-)$1	275	156	194	11.4520
UCUUCCUCCCCUCCUGCAGGUGCGCUACAAGGAGGAGU	chr17:37054564-37054879(+)$1	315	81	119	16.1582
UGCCACAUCUCUUGAAUCCUUGGUUGUGGUGUGGUAAU	chr8:117669353-117669638(-)$1	285	243	281	12.2370
AAGUAUGCUUCUAGGGGAUCACCUGAACAGUUUCUGUU	chr7:128407592-128407810(+)$1	218	155	193	11.6888
ACUUUAUCAUUUGUGCUGAUCGAAGAAUAGUUGAUGAU	chr5:179149838-179150120(+)$1	282	93	131	13.4134
GCAGAAGAUCAAAAUGCUAAAACAUGAUGAUUAAGUGC	chr1:28564319-28564605(+)$1	286	136	174	15.3084
GUUAGUGGUGAAACAAUGGAAGAAUAUAGCACAGAUGA	chr14:35522489-35522758(+)$1	269	78	116	15.3107
UACACAGUGGAGCAACCAAAGGAGAAAUCUCGGCCACA	chr17:28612303-28612599(-)$1	296	135	173	14.9140
CAUUCUAAGACCAGAUUCUCUAAUGUUUCUGGGUGUGC	chr1:150192894-150193164(-)$1	270	174	212	13.0167
UACAGUUUCUUUUGUUUUUUCUUAGAAAUAAAGGAAAU	chr8:117738155-117738512(-)$1	357	14	52	12.8830
ACAUGGCCCUACCUGCCUCCACAGGGACGUCCAGAUCG	chr19:50002676-50002921(+)$1	245	68	106	14.0928
AUGAAGAAGAGCUUGGUGGUAUGGCAGCCUUUUUACUC	chr15:69072648-69072895(-)$1	247	129	167	14.5910
UGGGAUUUUGUUUAAACUUUUAUAAUAAGGAUCCUAAG	chr16:46731315-46731622(+)$1	307	253	291	12.5274
AUAGUGAUUGAUUUAUGACAACAUAAUUGUUUUUAUGU	chr8:124381235-124381467(-)$1	232	183	221	11.8945
ccaacggcggcggcggcggcccggcccccgcgcgcggg	chr19:1020826-1021194(-)$1	368	239	277	14.1903
GCACCCACCGAAGACGACCAUGACGAGCUCUAGCUGGA	chr19:11560066-11560330(+)$1	264	128	166	13.3153
CGUGAAGAAAGAUGAGACUAAUGUGAAGAUGGAGUCUG	chr14:21679568-21679826(-)$1	258	147	185	13.5524
GGGAAUAAUGGUGGCGAGUUCCAUCACCAGCAUUAUUA	chr12:123741398-123741746(+)$1	348	227	265	12.3698
CGCUUGUUGGAAGAACUUGAAGAAGGACAAAAAGGAGU	chr8:48955507-48955775(+)$1	268	108	146	12.4580
UGUCAGCAUAACUAGAGUAAAAUUUCAUCUUGGAACUG	chr17:38784979-38785310(-)$1	331	3	41	18.0429
GUUCUUUGACCUAAUGAGAGAAAUCAGAACAAAGAAGA	chr2:121050616-121050981(+)$1	365	102	140	13.4293
ACAGAAGCUAGAGGGCACCACCUAGACCCUGCUCCAGU	chr11:68665294-68665571(-)$1	277	195	233	11.0722
UGACGCCGCAGCCAUGGAGAGCGGCCCGCGUGCGGAGC	chr1:36621826-36622080(+)$1	254	179	217	12.5855
GGGUCAAGGAGUGGACCCCCUGCGGACCGCACCAGGGC	chr19:14199905-14200266(-)$1	361	264	302	13.0426
GUUAACAUUCUUGUAAAGUUACCUCAAUGCAGUUAUGA	chr15:58913569-58913889(-)$1	320	242	280	15.1116
CGCCUGCCCCCAGUAUGGAGCAGCAUCGAGGGUUCGCA	chr19:16301597-16301827(+)$1	230	170	208	17.3947
CAUUUUACAAAGGUGUGGGCUAACAAAGCCAAAGGAGA	chr14:55408199-55408505(-)$1	306	85	123	18.1347
UGGGGUGAGGAAGUGUAACUGAACAGACUGACCUCUCU	chr1:151238895-151239166(+)$1	271	55	93	15.1040
AGACAAGCAGCAGCAACUCAGAUGUGUCUUCUGGAUGG	chr17:72205855-72206072(+)$1	217	24	62	13.4952
UUCAGGUAUUGCCGCUGUUGUCUCAGAGGAAAAUGCUU	chr8:117861084-117861299(-)$1	215	110	148	14.0272
CUUCAGCCCUAACCGCUACUGGCUGUGUGCUGCCACAG	chr5:180665058-180665330(-)$1	272	174	212	11.4389
AGCUAUUUAGUGAGAACCAUUUCGUUCUUCUGGUUUGU	chr14:21698377-21698625(-)$1	248	180	218	11.8365
GCUGACCUAAAGUUGGCAUUCAAGCGCAUCGGGGACCU	chr17:27413441-27413695(-)$1	254	145	183	19.1093
GCUGAGCUUAGCGUCCGAGGAggcggcggcggcggcgg	chr22:23522694-23522942(+)$1	248	42	80	16.0011
CUAUUUAGCGGACCGAGAAAGUCGUUACGAGGAAGAAG	chr14:21820710-21821078(-)$1	368	93	131	11.8623
GUGACUAAGUAAGGGUUUCUGGCAACUUUUAUUUUGUU	chrX:16887105-16887392(-)$1	287	186	224	16.3379
ggaggaggaggaggaagaAACACCUGAGCAACCCACUG	chr2:197657578-197657852(-)$1	274	76	114	11.5617
UGAAACGGCUGGAGGUGGGUUCACACUUCUCCCGGGCC	chr17:27416878-27417193(-)$1	315	201	239	16.0215
CCACGGAAUGGAAGAAGGUCAGCAGGGUUCAUUUAAAA	chr4:56465213-56465437(-)$1	224	89	127	13.1265
AUGAGAGAAGUCGGUGCAGAAUAGUAAACGGGAGUCUG	chr11:64537770-64537981(-)$1	211	53	91	18.0938
GCCGAGUGACAGAGACGCUCAGGCUGUGUUCUCAGGUG	chr19:58898552-58898807(+)$1	255	119	157	12.7698
UCAUAUUUAUUGCUUUCUUCUUUAGAUUUAGGAUAUGU	chr5:33458639-33458870(+)$1	231	135	173	14.5151
GGUGGGCUGUGCCACCCGCAACAGGACGGUGCCCUUCU	chr3:53263193-53263466(-)$1	273	25	63	16.6861
GGAGAGUCACAGAAAGCUAUAAUGCCACUGCCUCUCGG	chr22:21224524-21224822(+)$1	298	53	91	15.2086
AAGCUUUCAGCGCGAGUUCAAACCUCACCGCACACAGG	chr19:9271358-9271752(+)$1	394	320	358	11.3933
UGCUGUCUGUAGCUGAGCACUUCCUGGAGCAGCAGAUG	chr1:156294737-156294980(-)$1	243	109	147	13.2573

#DB
(..((((....(((((((......)))))))....)))	chr1:224492605-224492928(-)$1	1	59	97	14.4230
))))..((((..(..((......))..)..))))((((	chr11:129992252-129992501(+)$1	1	64	102	12.8454
(.((.(((...((.((....)).))...))))).))).	chr1:144902918-144903225(-)$1	1	47	85	11.8748
(((((((((..((((((......))))))..)))))))	chr15:44093807-44094111(+)$1	1	1	39	13.7397
..(((.(((...((.........))..))).)))))))	chr19:46191601-46191865(-)$1	1	92	130	13.3765
((....((....((((..(.....)..))))...))..	chr9:134348854-134349123(+)$1	1	123	161	12.7455
.((((.(((.(((((((......)))))))...))).)	chr22:20106561-20106772(+)$1	1	136	174	14.2578
..(((((((..((..((.(......).))...))..))	chr1:27105613-27105897(+)$1	1	105	143	12.0385
(((.((.(((...(((.(......).))).)))..)).	chr16:56642445-56642697(+)$1	1	111	149	15.2262
)(((((((((.(((.(((.....))).)))))).))))	chr17:38788445-38788720(-)$1	1	156	194	11.4520
((...(((((((...((......))....))).)))).	chr17:37054564-37054879(+)$1	1	81	119	16.1582
(((((((((.....((((...))))..)))))))))).	chr8:117669353-117669638(-)$1	1	243	281	12.2370
(((..((.(((.(((......)))))))).)))).)))	chr7:128407592-128407810(+)$1	1	155	193	11.6888
(..((((((.((((.((......)).)))).)))))))	chr5:179149838-179150120(+)$1	1	93	131	13.4134
(((...(((((..(((......)))..)))))...)))	chr1:28564319-28564605(+)$1	1	136	174	15.3084
(((.((.(((.....((......))....)))..))..	chr14:35522489-35522758(+)$1	1	78	116	15.3107
(.....((.(((....(......)....))).)).)).	chr17:28612303-28612599(-)$1	1	135	173	14.9140
(((((((...(((((..(......)..)))))......	chr1:150192894-150193164(-)$1	1	174	212	13.0167
(...(((((((((((((((....)))))))))))))))	chr8:117738155-117738512(-)$1	1	14	52	12.8830
(..(((.(...((((......))))...).)))..)).	chr19:50002676-50002921(+)$1	1	68	106	14.0928
(..((((((.(((..((......)))))))))))..))	chr15:69072648-69072895(-)$1	1	129	167	14.5910
(((((((((..(((........)))..)))))))))))	chr16:46731315-46731622(+)$1	1	253	291	12.5274
((((.(((....(((((....)))))..))).))))))	chr8:124381235-124381467(-)$1	1	183	221	11.8945
((....(((((((.(((......))).)))).))))))	chr19:1020826-1021194(-)$1	1	239	277	14.1903
((.(((((((.(((.(..(.....)..))))...))).	chr19:11560066-11560330(+)$1	1	128	166	13.3153
(.(..(((...((...((....))....))....))).	chr14:21679568-21679826(-)$1	1	147	185	13.5524
.))(((((((.(((.((......)).))).))))))).	chr12:123741398-123741746(+)$1	1	227	265	12.3698
(((((.((....(..(((....)))..)...)).))))	chr8:48955507-48955775(+)$1	1	108	146	12.4580
((((((..(((...(((......)))...)))...)))	chr17:38784979-38785310(-)$1	1	3	41	18.0429
.(((((((......(((......)))...))))))).)	chr2:121050616-121050981(+)$1	1	102	140	13.4293
((.(.(((...(((((........).))))))).).))	chr11:68665294-68665571(-)$1	1	195	233	11.0722
(..((((((.(((.........)))..))).)))..))	chr1:36621826-36622080(+)$1	1	179	217	12.5855
(((((..((.((((.((......)).)))).))..)))	chr19:14199905-14200266(-)$1	1	264	302	13.0426
(((..(((..(((((..(......)..)))))..))).	chr15:58913569-58913889(-)$1	1	242	280	15.1116
(...((((((..(.(((......))))..)))...)))	chr19:16301597-16301827(+)$1	1	170	208	17.3947
(.((((.(...(((.((......))..)))....).))	chr14:55408199-55408505(-)$1	1	85	123	18.1347
.(((((.((....(((......)))..)).)))))...	chr1:151238895-151239166(+)$1	1	55	93	15.1040
(((..((..(((.(......).)))..)))))))))..	chr17:72205855-72206072(+)$1	1	24	62	13.4952
)).(((((((.((.(((......))).))..)))))))	chr8:117861084-117861299(-)$1	1	110	148	14.0272
...((((....((.(((...))).))..)))).)))))	chr5:180665058-180665330(-)$1	1	174	212	11.4389
)(((((((((.((((((......))))))))))...))	chr14:21698377-21698625(-)$1	1	180	218	11.8365
(....(((...((..((......))..)).)))..)))	chr17:27413441-27413695(-)$1	1	145	183	19.1093
((((.(((..((..(((......)))..))...)))..	chr22:23522694-23522942(+)$1	1	42	80	16.0011
((.(((..((...(((.....)))...))..)))..))	chr14:21820710-21821078(-)$1	1	93	131	11.8623
..(((.(((((((((((......))))))))))).)))	chrX:16887105-16887392(-)$1	1	186	224	16.3379
(..((..(...(((........)))...)..))..)).	chr2:197657578-197657852(-)$1	1	76	114	11.5617
((...(((..(((((((......))))))).)))...)	chr17:27416878-27417193(-)$1	1	201	239	16.0215
(((..(((((((....(.....)....)))))))....	chr4:56465213-56465437(-)$1	1	89	127	13.1265
(..(((....(((.(((......)))..)))...))).	chr11:64537770-64537981(-)$1	1	53	91	18.0938
((((((.((((.((.(......))).))))))).))))	chr19:58898552-58898807(+)$1	1	119	157	12.7698
((((((...(((...(((.....)))..)))...))))	chr5:33458639-33458870(+)$1	1	135	173	14.5151
((.((((...(((..((......))..)))))))..))	chr3:53263193-53263466(-)$1	1	25	63	16.6861
((((((...(((...((......))..))).)))))..	chr22:21224524-21224822(+)$1	1	53	91	15.2086
...(((((.(.(((.((.........))))).)...))	chr19:9271358-9271752(+)$1	1	320	358	11.3933
)))))(((((.(((.((......))..))).)))))..	chr1:156294737-156294980(-)$1	1	109	147	13.2573

#PSSM
c : 0.16	d : 0.12	e : 0.10	g : 0.09	= : 0.09	b : 0.07	" : 0.05	h : 0.05	i : 0.03	f : 0.03	F : 0.03	! : 0.03	a : 0.01	: : 0.01	} : 0.01	[ : 0.01	$ : 0.01	
! : 0.14	d : 0.14	e : 0.12	g : 0.09	c : 0.09	" : 0.07	= : 0.07	[ : 0.05	i : 0.03	f : 0.03	$ : 0.03	: : 0.01	h : 0.01	b : 0.01	B : 0.01	# : 0.01	
d : 0.14	! : 0.12	e : 0.09	" : 0.09	c : 0.07	g : 0.07	= : 0.07	[ : 0.07	# : 0.05	i : 0.03	a : 0.03	$ : 0.03	b : 0.01	f : 0.01	h : 0.01	B : 0.01	: : 0.01	
d : 0.16	c : 0.12	e : 0.10	g : 0.09	" : 0.09	! : 0.09	= : 0.07	# : 0.05	f : 0.05	b : 0.03	i : 0.03	[ : 0.03	$ : 0.01	a : 0.01	
d : 0.14	c : 0.14	g : 0.09	! : 0.09	e : 0.09	[ : 0.07	= : 0.07	# : 0.05	b : 0.05	f : 0.05	" : 0.05	i : 0.03	: : 0.01	$ : 0.01	
c : 0.25	d : 0.10	g : 0.10	e : 0.09	[ : 0.07	b : 0.07	= : 0.07	f : 0.05	i : 0.03	# : 0.03	! : 0.03	: : 0.01	" : 0.01	$ : 0.01	
c : 0.23	d : 0.12	[ : 0.10	b : 0.09	g : 0.09	= : 0.09	! : 0.07	f : 0.05	e : 0.05	" : 0.03	i : 0.01	# : 0.01	
c : 0.30	b : 0.09	g : 0.09	d : 0.07	= : 0.07	" : 0.07	# : 0.05	e : 0.05	a : 0.05	! : 0.05	f : 0.03	i : 0.01	[ : 0.01	
" : 0.20	c : 0.20	# : 0.10	d : 0.07	g : 0.07	= : 0.07	! : 0.07	b : 0.05	f : 0.03	e : 0.03	[ : 0.03	i : 0.01	% : 0.01	
c : 0.21	" : 0.18	# : 0.12	! : 0.10	[ : 0.09	d : 0.07	g : 0.05	e : 0.03	= : 0.03	$ : 0.01	% : 0.01	b : 0.01	a : 0.01	
c : 0.20	" : 0.18	[ : 0.12	# : 0.10	! : 0.09	d : 0.07	g : 0.05	e : 0.05	$ : 0.03	= : 0.03	% : 0.01	b : 0.01	
c : 0.30	b : 0.12	d : 0.09	g : 0.07	" : 0.07	# : 0.07	! : 0.05	f : 0.03	$ : 0.03	[ : 0.03	e : 0.03	= : 0.03	% : 0.01	
c : 0.23	b : 0.14	d : 0.10	" : 0.10	g : 0.05	a : 0.05	# : 0.05	e : 0.05	f : 0.03	$ : 0.03	! : 0.03	= : 0.03	% : 0.01	[ : 0.01	
c : 0.23	! : 0.12	[ : 0.10	d : 0.09	" : 0.09	g : 0.05	e : 0.05	f : 0.03	b : 0.03	$ : 0.03	# : 0.03	= : 0.03	% : 0.01	r : 0.01	a : 0.01	
c : 0.23	[ : 0.16	! : 0.10	d : 0.07	" : 0.07	g : 0.05	e : 0.05	f : 0.03	r : 0.03	# : 0.03	= : 0.03	q : 0.03	b : 0.01	$ : 0.01	o : 0.01	
b : 0.27	c : 0.27	g : 0.05	o : 0.05	a : 0.05	f : 0.03	r : 0.03	d : 0.03	# : 0.03	! : 0.03	= : 0.03	q : 0.03	e : 0.01	" : 0.01	
b : 0.27	c : 0.20	o : 0.10	! : 0.07	g : 0.05	q : 0.05	f : 0.03	r : 0.03	a : 0.03	= : 0.03	m : 0.01	[ : 0.01	d : 0.01	e : 0.01	n : 0.01	
o : 0.56	r : 0.05	a : 0.05	c : 0.05	q : 0.05	m : 0.03	! : 0.03	n : 0.03	g : 0.01	[ : 0.01	d : 0.01	= : 0.01	b : 0.01	l : 0.01	
o : 0.63	m : 0.07	n : 0.07	r : 0.05	a : 0.05	q : 0.05	l : 0.03	= : 0.01	
o : 0.65	n : 0.10	m : 0.09	r : 0.05	q : 0.05	l : 0.03	
o : 0.63	n : 0.10	m : 0.07	r : 0.05	q : 0.05	b : 0.01	l : 0.01	a : 0.01	c : 0.01	
o : 0.60	n : 0.09	r : 0.05	c : 0.05	m : 0.05	q : 0.05	d : 0.03	b : 0.01	e : 0.01	] : 0.01	
o : 0.54	c : 0.18	n : 0.07	r : 0.03	d : 0.03	a : 0.03	] : 0.01	m : 0.01	e : 0.01	b : 0.01	q : 0.01	
c : 0.32	b : 0.29	o : 0.09	f : 0.03	n : 0.03	g : 0.03	d : 0.03	= : 0.03	a : 0.01	e : 0.01	q : 0.01	] : 0.01	4 : 0.01	r : 0.01	
c : 0.30	b : 0.29	a : 0.10	g : 0.05	4 : 0.05	f : 0.03	d : 0.03	= : 0.03	o : 0.01	e : 0.01	3 : 0.01	r : 0.01	
2 : 0.32	c : 0.20	] : 0.10	4 : 0.09	3 : 0.07	g : 0.05	f : 0.03	= : 0.03	a : 0.01	e : 0.01	b : 0.01	r : 0.01	
2 : 0.41	3 : 0.10	4 : 0.09	] : 0.07	c : 0.07	d : 0.07	g : 0.05	f : 0.03	= : 0.03	a : 0.01	b : 0.01	
c : 0.18	b : 0.14	d : 0.10	2 : 0.10	3 : 0.09	g : 0.07	4 : 0.07	= : 0.07	a : 0.05	e : 0.05	f : 0.03	
c : 0.29	b : 0.16	d : 0.12	g : 0.07	= : 0.07	f : 0.05	e : 0.05	3 : 0.05	2 : 0.03	4 : 0.03	a : 0.03	
c : 0.32	d : 0.14	g : 0.10	] : 0.10	2 : 0.09	= : 0.07	e : 0.05	3 : 0.03	b : 0.03	f : 0.01	
c : 0.30	d : 0.12	] : 0.12	g : 0.09	2 : 0.07	3 : 0.07	= : 0.07	e : 0.07	4 : 0.03	f : 0.01	
c : 0.25	3 : 0.12	e : 0.10	d : 0.09	g : 0.09	b : 0.07	= : 0.07	] : 0.07	4 : 0.05	f : 0.03	i : 0.01	
c : 0.20	3 : 0.16	b : 0.10	= : 0.09	g : 0.09	d : 0.07	4 : 0.05	e : 0.05	] : 0.03	f : 0.03	2 : 0.03	i : 0.01	8 : 0.01	a : 0.01	
3 : 0.16	c : 0.12	2 : 0.12	] : 0.09	= : 0.09	g : 0.09	d : 0.07	4 : 0.05	f : 0.05	e : 0.05	b : 0.03	i : 0.01	8 : 0.01	
2 : 0.18	c : 0.14	3 : 0.10	e : 0.09	g : 0.09	= : 0.07	f : 0.05	d : 0.05	] : 0.05	4 : 0.03	b : 0.03	a : 0.03	i : 0.01	8 : 0.01	
c : 0.18	b : 0.10	g : 0.10	d : 0.09	e : 0.09	2 : 0.09	= : 0.09	f : 0.05	3 : 0.05	i : 0.03	] : 0.03	4 : 0.03	8 : 0.01	
c : 0.18	d : 0.12	e : 0.09	g : 0.09	= : 0.09	b : 0.07	f : 0.07	3 : 0.05	4 : 0.05	i : 0.03	] : 0.03	8 : 0.01	h : 0.01	2 : 0.01	5 : 0.01	: : 0.01	
d : 0.12	c : 0.12	e : 0.09	3 : 0.09	g : 0.07	: : 0.07	] : 0.07	= : 0.07	2 : 0.05	f : 0.05	4 : 0.05	i : 0.03	8 : 0.01	b : 0.01	h : 0.01	5 : 0.01	

#score	766.5636223853656
#seq	55
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_transcript_m1_run1.txt

#BEAR
d!!ccc!!attttttttttta22cccd	chr20:2442207-2442445(-)$1	238	89	116	23.6232
"""ddddwwwwwwwwwwwwwwdddd44	chr14:101201176-101201399(+)$1	223	91	118	23.3995
========vvvvvvvvvvvvv======	chr5:176524835-176525056(+)$1	221	25	52	25.8591
c[ccc[ccctttttttttttccc]ccc	chr5:175816480-175816741(+)$1	261	167	194	24.0770
fffff[bbwwwwwwwwwwwwwwbb]ff	chr14:105954599-105954825(+)$1	226	179	206	21.3649
"""eeeeevvvvvvvvvvvvveeeee5	chr19:36038207-36038506(+)$1	299	202	229	24.5036
c!!eeeeevvvvvvvvvvvvveeeee2	chr6:75950791-75951020(-)$1	229	41	68	25.1051
+gggggggtttttttttttggggggg>	chr11:73373597-73373906(+)$1	309	128	155	22.4910
dddd[cccwwwwwwwwwwwwwwccc]d	chr19:1244631-1244889(+)$1	258	34	61	22.8123
#bbfffffftttttttttttffffff]	chr5:176516467-176516737(+)$1	270	118	145	22.2656
c[eeeeewwwwwwwwwwwwwweeeee]	chr11:66276675-66276981(+)$1	306	179	206	23.3417
hhhhhhhhwwwwwwwwwwwwwwhhhhh	chr3:52741722-52742038(+)$1	316	171	198	20.9182
:gggggggvvvvvvvvvvvvvgggggg	chr7:127729576-127729838(+)$1	262	225	252	24.5247
fffff[bbuuuuuuuuuuuubbfffff	chr2:74688198-74688443(-)$1	245	60	87	22.6204
========uuuuuuuuuuuu=======	chr5:176524745-176525006(+)$1	261	201	228	25.3332
!!bb[ddddtttttttttttdddd]bb	chr20:62694565-62694815(+)$1	250	102	129	22.5328
:ffffffvvvvvvvvvvvvvffffff:	chr16:31102221-31102536(-)$1	315	214	241	21.9237
bb[ddddvvvvvvvvvvvvvddddbb:	chrX:48750695-48750937(-)$1	242	213	240	22.4754
iiffffffuuuuuuuuuuuuffffff:	chr17:73143627-73143848(-)$1	221	55	82	22.7446
$$$$$cccvvvvvvvvvvvvvccc666	chr20:32667790-32668054(+)$1	264	36	63	23.2500
d!!eeeeeuuuuuuuuuuuueeeee]d	chr6:32813005-32813271(-)$1	266	184	211	24.4035
c####ddddtttttttttttdddd666	chr11:65688725-65688976(+)$1	251	112	139	22.0872
ccc[ddddtttttttttttdddd]ccc	chr5:135398785-135399067(+)$1	282	91	118	22.5444
====[cccvvvvvvvvvvvvvccc]==	chr9:131909922-131910190(+)$1	268	182	209	25.8588
hhhfffffftttttttttttffffffe	chr6:42988845-42989080(+)$1	235	154	181	22.0268
eeee:cccuuuuuuuuuuuucccGGGG	chr6:30711302-30711538(-)$1	236	194	221	21.0210
ccc!!ddddtttttttttttdddd22c	chr2:27599786-27600040(+)$1	254	167	194	23.0269
ccc"""ccctttttttttttccc333c	chr7:10978336-10978607(-)$1	271	88	115	23.9655
""gggggggtttttttttttggggggg	chr8:99057177-99057393(-)$1	216	85	112	24.0240
###eeeeewwwwwwwwwwwwwweeeee	chr4:88904125-88904388(+)$1	263	100	127	23.0383
ddd[cccvvvvvvvvvvvvvcccdddd	chrX:153577020-153577270(-)$1	250	190	217	23.9320
eeeeee[bbtttttttttttbbeeeee	chr6:41757394-41757613(+)$1	219	126	153	22.1318
##ccccccuuuuuuuuuuuuccc]ccc	chr2:217363891-217364109(+)$1	218	169	196	24.8177
========vvvvvvvvvvvvv======	chr19:4659842-4660061(-)$1	219	38	65	25.8591
gggggggvvvvvvvvvvvvvggggggg	chr6:75949915-75950129(-)$1	214	88	115	25.0324
hhh[dddduuuuuuuuuuuudddd]hh	chr17:34171835-34172136(+)$1	301	206	233	23.2055
dddd[cccwwwwwwwwwwwwwwccc]d	chr2:219679722-219679970(+)$1	248	153	180	22.8123
eeee[ddddtttttttttttdddd]ee	chr17:5336155-5336467(-)$1	312	251	278	22.7516
iiiiiiiiitttttttttttiiiiiii	chr6:31765232-31765514(-)$1	282	180	207	23.7833
b!!cccyyyyyyyyyyyyyyyyccc22	chr11:63743810-63744090(+)$1	280	187	214	20.8098
ggggg!!attttttttttta22ggggg	chr11:67758562-67758883(-)$1	321	275	302	23.4567
ddddeeeeettttttttttteeeee]d	chr1:46782151-46782406(+)$1	255	144	171	22.5647
c!!fffffftttttttttttffffffc	chr12:56555143-56555390(+)$1	247	218	245	23.1066
[ggggggguuuuuuuuuuuuggggggg	chr1:156563643-156563939(+)$1	296	5	32	24.8616
========ttttttttttt========	chr21:27096833-27097077(-)$1	244	142	169	23.8132
dgggggggvvvvvvvvvvvvvgggggg	chr6:75949981-75950201(-)$1	220	159	186	25.2994
eeebb[ccctttttttttttccc]bb]	chr16:18799310-18799520(-)$1	210	57	84	22.5249
c!!eeeeeuuuuuuuuuuuueeeee33	chr6:33384283-33384546(-)$1	263	193	220	24.9327
cc[cccavvvvvvvvvvvvva]ccc]c	chr20:34541870-34542142(-)$1	272	109	136	25.0502
Feeeeewwwwwwwwwwwwwweeeee::	chr1:23884772-23885007(-)$1	235	171	198	19.9620
c[gggggggtttttttttttggggggg	chr11:57509183-57509416(+)$1	233	45	72	23.9464
""a[cccvvvvvvvvvvvvvccc]a33	chr11:63971656-63971901(+)$1	245	103	130	25.5206
[cccddddvvvvvvvvvvvvvdddd22	chr7:142966021-142966279(+)$1	258	91	118	24.4457
egggggggtttttttttttggggggg3	chr20:57603789-57603996(-)$1	207	41	68	23.2314
$$$$dddduuuuuuuuuuuudddd333	chr22:47400785-47401135(+)$1	350	212	239	23.8941
iiiiiiiivvvvvvvvvvvvviiiiii	chr7:56170572-56170804(-)$1	232	2	29	25.4738
CCeeeeevvvvvvvvvvvvveeeeeee	chr1:1375850-1376114(+)$1	264	75	102	21.9010
"""ddddwwwwwwwwwwwwwwdddd33	chr19:13055076-13055282(+)$1	206	79	106	23.6300
gg[eeeeewwwwwwwwwwwwwweeeee	chr2:55461975-55462198(+)$1	223	29	56	22.9539
gggddddwwwwwwwwwwwwwwdddd]g	chr6:8079822-8080129(-)$1	307	218	245	23.0836
eccc[cccvvvvvvvvvvvvvccc]cc	chr2:232672406-232672702(+)$1	296	64	91	25.1719
cc[a!!bbuuuuuuuuuuuubb333a]	chr12:56510477-56510680(+)$1	203	144	171	23.7737

#otherMatches

#Seq PSSM
UGUACAUAGUCCUUUUAUCUCCUUGUG	chr20:2442207-2442445(-)$1	238	89	116	23.6232
GUUCCGCAGAGCUUACUAUACGCGGUC	chr14:101201176-101201399(+)$1	223	91	118	23.3995
CAGGGUUCUGCUCGGCUUCUUGGACCU	chr5:176524835-176525056(+)$1	221	25	52	25.8591
AAAGUUUUUUCAAAAAUCCUAGAUGCU	chr5:175816480-175816741(+)$1	261	167	194	24.0770
CCUGUUGACUUUUUCCACCUUCUCUGC	chr14:105954599-105954825(+)$1	226	179	206	21.3649
AAACAGUAUUUGGAAAGUUGUUGCUGC	chr19:36038207-36038506(+)$1	299	202	229	24.5036
UCUUCGUCAGAUUGGGCAGAGGACGAU	chr6:75950791-75951020(-)$1	229	41	68	25.1051
CUUUCUAUCCCAAUCACCAAUAGAAAU	chr11:73373597-73373906(+)$1	309	128	155	22.4910
GGGGCUCUCCUUCCGCCUCUCAAGAUC	chr19:1244631-1244889(+)$1	258	34	61	22.8123
GAGAGCUGUGAGAAGGAGAUGCGGCUG	chr5:176516467-176516737(+)$1	270	118	145	22.2656
GGUGACacaaccccuuccauuugucag	chr11:66276675-66276981(+)$1	306	179	206	23.3417
AUAAGAGCUAAAACCACCUAAUGCUCU	chr3:52741722-52742038(+)$1	316	171	198	20.9182
ACUGUUCCACAAGCCAGGAAGGGAGCA	chr7:127729576-127729838(+)$1	262	225	252	24.5247
AGCCAAGACACUCAUGCCACUCUGGCU	chr2:74688198-74688443(-)$1	245	60	87	22.6204
CCUCCUGCCUCCCAAUACCAGCAGGAG	chr5:176524745-176525006(+)$1	261	201	228	25.3332
GAUGGGCAAGGAAGAGGAGAUUGCGCG	chr20:62694565-62694815(+)$1	250	102	129	22.5328
CGCACAUGACAAUGGACCAAAUGUGCC	chr16:31102221-31102536(-)$1	315	214	241	21.9237
GGACUCCUUGAACUGCCUAUGGGGCCC	chrX:48750695-48750937(-)$1	242	213	240	22.4754
GUUUUUUCUAUUGUAUUUCUGAAGAAA	chr17:73143627-73143848(-)$1	221	55	82	22.7446
AGCAGGCGCCUCCUCCCCCAACGCAUC	chr20:32667790-32668054(+)$1	264	36	63	23.2500
UACGGAAAGAUGAUCAGCUAUUUUCAA	chr6:32813005-32813271(-)$1	266	184	211	24.4035
CCUUUGCCCCCAGCGCCCCCGGGCCCC	chr11:65688725-65688976(+)$1	251	112	139	22.0872
CCUGUCUAUCAAAAGUUAUUAGAGAGG	chr5:135398785-135399067(+)$1	282	91	118	22.5444
GGAGAGAUACCUGCUGCUUCCAUUGCU	chr9:131909922-131910190(+)$1	268	182	209	25.8588
CAGauuuuauaaaaauuaauuaaaauC	chr6:42988845-42989080(+)$1	235	154	181	22.0268
CAGGUCUCUUGGUAUUUAUUGAGCUUU	chr6:30711302-30711538(-)$1	236	194	221	21.0210
GGCCCAGUUCCCCAUCAUUAAACUCAG	chr2:27599786-27600040(+)$1	254	167	194	23.0269
UCCCCCUCUUUGUAUUUAUUGGAACUG	chr7:10978336-10978607(-)$1	271	88	115	23.9655
GCUGGAGUCGAUCAACUCUAGGCUCCA	chr8:99057177-99057393(-)$1	216	85	112	24.0240
ACUCCCUGUAAACUAAAAGCUUCAGGG	chr4:88904125-88904388(+)$1	263	100	127	23.0383
CUGCGCUCACCUGCCUCCCCAGCCAGC	chrX:153577020-153577270(-)$1	250	190	217	23.9320
AAAGUUCUGUACAUAGUUCCCAAGCUU	chr6:41757394-41757613(+)$1	219	126	153	22.1318
AAUGGUGAAGAAAAUUGAAAUCAGCCA	chr2:217363891-217364109(+)$1	218	169	196	24.8177
UUUUUCAGUCUAAAGCCGCAUUUGAAA	chr19:4659842-4660061(-)$1	219	38	65	25.8591
GCCACCAUGAUUCUUACAGUUGGUGGU	chr6:75949915-75950129(-)$1	214	88	115	25.0324
GGUGAGUAUUAGAAUGUGUUUAUUAAC	chr17:34171835-34172136(+)$1	301	206	233	23.2055
AGGAACUCCUUGCACACACCCUGAGCU	chr2:219679722-219679970(+)$1	248	153	180	22.8123
AUACCAAAUUUAAAUUAUAUGUUUUGU	chr17:5336155-5336467(-)$1	312	251	278	22.7516
GGCUGGGAAACUUCAAAGCCUUCCCAG	chr6:31765232-31765514(-)$1	282	180	207	23.7833
AAAUCUAUUUAAACUUUACUUCAGAAA	chr11:63743810-63744090(+)$1	280	187	214	20.8098
CAGAAAAUGAGCAAUAAAGAGAUUUUG	chr11:67758562-67758883(-)$1	321	275	302	23.4567
CAUCAGAAUAUUUCCUUAUGGUUUUGG	chr1:46782151-46782406(+)$1	255	144	171	22.5647
UCGGUUCGGUUCUUUCUUUCCUGAACA	chr12:56555143-56555390(+)$1	247	218	245	23.1066
UUCCUGAACACCACCCUCUUUUCAGGA	chr1:156563643-156563939(+)$1	296	5	32	24.8616
UUAAUCUGGUAAUUUGUCACGGAUUAG	chr21:27096833-27097077(-)$1	244	142	169	23.8132
AGCCACCAUGAUUCUUACAGUUGGUGG	chr6:75949981-75950201(-)$1	220	159	186	25.2994
UUACAUUGGCGAAUUUGAAAUCAUUGA	chr16:18799310-18799520(-)$1	210	57	84	22.5249
GCCCCCAAUAAAUCCCGUCUUUGGGUC	chr6:33384283-33384546(-)$1	263	193	220	24.9327
UGAAGCCAUCCCUACGCCCCGAGCUGC	chr20:34541870-34542142(-)$1	272	109	136	25.0502
AUGGGCCCCAACUUCGCCCUGCCCACU	chr1:23884772-23885007(-)$1	235	171	198	19.9620
GCGCCGGGGGGGGCCAGGGGCCCCGGU	chr11:57509183-57509416(+)$1	233	45	72	23.9464
UUGUGCCGCCGCUGCCUCUGGGCCCUC	chr11:63971656-63971901(+)$1	245	103	130	25.5206
AUGUGGCAACCUUUACUUCUAUGCCUC	chr7:142966021-142966279(+)$1	258	91	118	24.4457
GAGUUUUUAAGAAAACACAGAGAACUA	chr20:57603789-57603996(-)$1	207	41	68	23.2314
CCUUUGUAUUcacacacucuuacacac	chr22:47400785-47401135(+)$1	350	212	239	23.8941
CCAUUUUCCAUUAACCUCAAAGAGGAU	chr7:56170572-56170804(-)$1	232	2	29	25.4738
CCAGCAACCACACCAUCUUCUUGCUGU	chr1:1375850-1376114(+)$1	264	75	102	21.9010
AACGGGGCUCUUCUCAUUUCACCCCUC	chr19:13055076-13055282(+)$1	206	79	106	23.6300
UGCUAAGAAAAGGAAGAAGAAGUCUUA	chr2:55461975-55462198(+)$1	223	29	56	22.9539
AAGUUGAGAUCCAGUUAUAAAUUAACC	chr6:8079822-8080129(-)$1	307	218	245	23.0836
CCAGCGCCUCCCCACCCUGUUGGUACU	chr2:232672406-232672702(+)$1	296	64	91	25.1719
UGGCGAGUAGUAGCGAGGAGACGAAGG	chr12:56510477-56510680(+)$1	203	144	171	23.7737

#DB
(..(((..(...........)..))))	chr20:2442207-2442445(-)$1	1	89	116	23.6232
...((((..............))))..	chr14:101201176-101201399(+)$1	1	91	118	23.3995
((((((((.............))))))	chr5:176524835-176525056(+)$1	1	25	52	25.8591
(.(((.(((...........))).)))	chr5:175816480-175816741(+)$1	1	167	194	24.0770
(((((.((..............)).))	chr14:105954599-105954825(+)$1	1	179	206	21.3649
...(((((.............))))).	chr19:36038207-36038506(+)$1	1	202	229	24.5036
(..(((((.............))))).	chr6:75950791-75951020(-)$1	1	41	68	25.1051
.(((((((...........))))))).	chr11:73373597-73373906(+)$1	1	128	155	22.4910
((((.(((..............))).)	chr19:1244631-1244889(+)$1	1	34	61	22.8123
.((((((((...........)))))).	chr5:176516467-176516737(+)$1	1	118	145	22.2656
(.(((((..............))))).	chr11:66276675-66276981(+)$1	1	179	206	23.3417
((((((((..............)))))	chr3:52741722-52742038(+)$1	1	171	198	20.9182
.(((((((.............))))))	chr7:127729576-127729838(+)$1	1	225	252	24.5247
(((((.((............)))))))	chr2:74688198-74688443(-)$1	1	60	87	22.6204
((((((((............)))))))	chr5:176524745-176525006(+)$1	1	201	228	25.3332
..((.((((...........)))).))	chr20:62694565-62694815(+)$1	1	102	129	22.5328
.((((((.............)))))).	chr16:31102221-31102536(-)$1	1	214	241	21.9237
((.((((.............)))))).	chrX:48750695-48750937(-)$1	1	213	240	22.4754
))((((((............)))))).	chr17:73143627-73143848(-)$1	1	55	82	22.7446
.....(((.............)))...	chr20:32667790-32668054(+)$1	1	36	63	23.2500
(..(((((............))))).)	chr6:32813005-32813271(-)$1	1	184	211	24.4035
(....((((...........))))...	chr11:65688725-65688976(+)$1	1	112	139	22.0872
(((.((((...........)))).)))	chr5:135398785-135399067(+)$1	1	91	118	22.5444
((((.(((.............))).))	chr9:131909922-131910190(+)$1	1	182	209	25.8588
)))((((((...........))))))(	chr6:42988845-42989080(+)$1	1	154	181	22.0268
)))).(((............)))))))	chr6:30711302-30711538(-)$1	1	194	221	21.0210
(((..((((...........))))..)	chr2:27599786-27600040(+)$1	1	167	194	23.0269
(((...(((...........)))...)	chr7:10978336-10978607(-)$1	1	88	115	23.9655
..(((((((...........)))))))	chr8:99057177-99057393(-)$1	1	85	112	24.0240
...(((((..............)))))	chr4:88904125-88904388(+)$1	1	100	127	23.0383
(((.(((.............)))))))	chrX:153577020-153577270(-)$1	1	190	217	23.9320
((((((.((...........)))))))	chr6:41757394-41757613(+)$1	1	126	153	22.1318
..((((((............))).)))	chr2:217363891-217364109(+)$1	1	169	196	24.8177
((((((((.............))))))	chr19:4659842-4660061(-)$1	1	38	65	25.8591
(((((((.............)))))))	chr6:75949915-75950129(-)$1	1	88	115	25.0324
(((.((((............)))).))	chr17:34171835-34172136(+)$1	1	206	233	23.2055
((((.(((..............))).)	chr2:219679722-219679970(+)$1	1	153	180	22.8123
((((.((((...........)))).))	chr17:5336155-5336467(-)$1	1	251	278	22.7516
(((((((((...........)))))))	chr6:31765232-31765514(-)$1	1	180	207	23.7833
(..(((................)))..	chr11:63743810-63744090(+)$1	1	187	214	20.8098
(((((..(...........)..)))))	chr11:67758562-67758883(-)$1	1	275	302	23.4567
(((((((((...........))))).)	chr1:46782151-46782406(+)$1	1	144	171	22.5647
(..((((((...........)))))))	chr12:56555143-56555390(+)$1	1	218	245	23.1066
.(((((((............)))))))	chr1:156563643-156563939(+)$1	1	5	32	24.8616
((((((((...........))))))))	chr21:27096833-27097077(-)$1	1	142	169	23.8132
)(((((((.............))))))	chr6:75949981-75950201(-)$1	1	159	186	25.2994
(((((.(((...........))).)).	chr16:18799310-18799520(-)$1	1	57	84	22.5249
(..(((((............)))))..	chr6:33384283-33384546(-)$1	1	193	220	24.9327
((.((((.............).))).)	chr20:34541870-34542142(-)$1	1	109	136	25.0502
)(((((..............)))))..	chr1:23884772-23885007(-)$1	1	171	198	19.9620
(.(((((((...........)))))))	chr11:57509183-57509416(+)$1	1	45	72	23.9464
..(.(((.............))).)..	chr11:63971656-63971901(+)$1	1	103	130	25.5206
.(((((((.............))))..	chr7:142966021-142966279(+)$1	1	91	118	24.4457
((((((((...........))))))).	chr20:57603789-57603996(-)$1	1	41	68	23.2314
....((((............))))...	chr22:47400785-47401135(+)$1	1	212	239	23.8941
((((((((.............))))))	chr7:56170572-56170804(-)$1	1	2	29	25.4738
(((((((.............)))))((	chr1:1375850-1376114(+)$1	1	75	102	21.9010
...((((..............))))..	chr19:13055076-13055282(+)$1	1	79	106	23.6300
((.(((((..............)))))	chr2:55461975-55462198(+)$1	1	29	56	22.9539
(((((((..............)))).)	chr6:8079822-8080129(-)$1	1	218	245	23.0836
)(((.(((.............))).))	chr2:232672406-232672702(+)$1	1	64	91	25.1719
((.(..((............))...).	chr12:56510477-56510680(+)$1	1	144	171	23.7737

#PSSM
c : 0.19	d : 0.11	e : 0.09	" : 0.08	= : 0.08	g : 0.06	# : 0.04	h : 0.04	i : 0.04	f : 0.03	: : 0.03	b : 0.03	$ : 0.03	[ : 0.03	+ : 0.01	! : 0.01	F : 0.01	C : 0.01	
g : 0.14	! : 0.11	c : 0.11	" : 0.08	= : 0.08	e : 0.08	d : 0.06	[ : 0.04	f : 0.04	h : 0.04	i : 0.04	# : 0.04	b : 0.03	$ : 0.03	C : 0.01	
g : 0.16	c : 0.11	e : 0.11	! : 0.09	= : 0.08	f : 0.06	d : 0.06	[ : 0.06	" : 0.04	h : 0.04	b : 0.03	$ : 0.03	# : 0.03	i : 0.03	a : 0.01	
e : 0.19	g : 0.14	c : 0.11	d : 0.11	f : 0.11	= : 0.08	[ : 0.06	b : 0.03	$ : 0.03	i : 0.03	h : 0.01	# : 0.01	! : 0.01	" : 0.01	a : 0.01	
e : 0.17	g : 0.14	d : 0.12	c : 0.11	f : 0.11	[ : 0.09	= : 0.06	! : 0.03	i : 0.03	h : 0.01	$ : 0.01	# : 0.01	: : 0.01	" : 0.01	b : 0.01	
c : 0.19	d : 0.19	e : 0.17	g : 0.12	f : 0.08	= : 0.06	[ : 0.06	i : 0.03	! : 0.03	h : 0.01	" : 0.01	
d : 0.19	c : 0.19	e : 0.14	g : 0.12	f : 0.08	= : 0.06	b : 0.04	! : 0.03	i : 0.03	h : 0.01	[ : 0.01	y : 0.01	a : 0.01	w : 0.01	
c : 0.16	d : 0.12	e : 0.11	g : 0.11	v : 0.11	w : 0.08	= : 0.06	b : 0.06	f : 0.06	i : 0.03	! : 0.01	h : 0.01	y : 0.01	a : 0.01	
v : 0.29	w : 0.17	u : 0.17	t : 0.08	d : 0.06	c : 0.04	f : 0.04	g : 0.03	a : 0.01	b : 0.01	i : 0.01	y : 0.01	e : 0.01	
t : 0.33	v : 0.29	w : 0.17	u : 0.17	y : 0.01	
t : 0.33	v : 0.29	w : 0.17	u : 0.17	y : 0.01	
t : 0.33	v : 0.29	w : 0.17	u : 0.17	y : 0.01	
t : 0.33	v : 0.29	w : 0.17	u : 0.17	y : 0.01	
t : 0.33	v : 0.29	w : 0.17	u : 0.17	y : 0.01	
t : 0.33	v : 0.29	w : 0.17	u : 0.17	y : 0.01	
t : 0.33	v : 0.29	w : 0.17	u : 0.17	y : 0.01	
t : 0.33	v : 0.29	w : 0.17	u : 0.17	y : 0.01	
t : 0.33	v : 0.29	w : 0.17	u : 0.17	y : 0.01	
t : 0.33	v : 0.29	w : 0.17	u : 0.17	y : 0.01	
v : 0.29	t : 0.25	w : 0.17	u : 0.17	g : 0.03	d : 0.01	y : 0.01	a : 0.01	= : 0.01	
v : 0.17	w : 0.16	d : 0.12	c : 0.11	g : 0.09	f : 0.08	e : 0.08	b : 0.04	a : 0.03	= : 0.03	i : 0.01	y : 0.01	2 : 0.01	
d : 0.19	c : 0.16	e : 0.12	g : 0.12	w : 0.09	f : 0.08	= : 0.06	b : 0.04	2 : 0.03	i : 0.03	y : 0.01	] : 0.01	
c : 0.22	d : 0.19	e : 0.17	g : 0.14	f : 0.09	= : 0.06	i : 0.03	2 : 0.01	b : 0.01	h : 0.01	3 : 0.01	
d : 0.19	e : 0.17	g : 0.14	c : 0.12	f : 0.09	] : 0.08	= : 0.06	3 : 0.03	i : 0.03	b : 0.01	h : 0.01	G : 0.01	
e : 0.17	g : 0.14	c : 0.12	] : 0.09	f : 0.09	d : 0.08	= : 0.06	3 : 0.04	b : 0.03	6 : 0.03	i : 0.03	h : 0.01	G : 0.01	2 : 0.01	a : 0.01	
g : 0.14	e : 0.12	f : 0.11	] : 0.09	c : 0.08	= : 0.08	3 : 0.08	b : 0.04	2 : 0.04	h : 0.03	6 : 0.03	i : 0.03	4 : 0.01	G : 0.01	d : 0.01	: : 0.01	a : 0.01	
c : 0.12	g : 0.12	d : 0.09	e : 0.09	= : 0.08	3 : 0.08	] : 0.06	: : 0.06	2 : 0.04	f : 0.03	h : 0.03	6 : 0.03	i : 0.03	4 : 0.01	5 : 0.01	> : 0.01	b : 0.01	G : 0.01	

#score	1454.89941287842
#seq	62
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF854NXI_HNRNPU_transcript_m2_run1.txt

#BEAR
[cccqqqqqqqqccc]	chr11:102047441-102047752(+)$1	311	99	115	13.6071
ddddqqqqqqqqdddd	chr6:16419083-16419330(-)$1	247	146	162	14.7995
ddddqqqqqqqqdddd	chr3:37926898-37927196(+)$1	298	245	261	14.7995
ddddqqqqqqqqdddd	chr6:52414808-52415193(-)$1	385	48	64	14.7995
eeeeqqqqqqqqeeee	chr20:47548982-47549255(+)$1	273	246	262	13.7172
[cccqqqqqqqqccc]	chr2:73187586-73187894(-)$1	308	113	129	13.6071
ddddqqqqqqqqdddd	chr7:29319184-29319490(+)$1	306	268	284	14.7995
ddddqqqqqqqqdddd	chr22:24496832-24497059(+)$1	227	94	110	14.7995
eeeeqqqqqqqqeeee	chrX:132947191-132947445(-)$1	254	204	220	13.7172
ffffqqqqqqqqffff	chr6:47273430-47273681(-)$1	251	213	229	12.4081
eeeaqqqqqqqqa]ee	chr19:878832-879097(-)$1	265	182	198	13.5871
eeeeqqqqqqqqeeee	chr1:55326035-55326320(-)$1	285	107	123	13.7172
dd[aqqqqqqqqa]dd	chr11:65192500-65192758(+)$1	258	131	147	14.0309
ddddqqqqqqqqdddd	chr3:187874122-187874408(+)$1	286	11	27	14.7995
eeeeqqqqqqqqeeee	chr17:53348660-53348892(+)$1	232	36	52	13.7172
ddddqqqqqqqqdddd	chr2:102321648-102321957(+)$1	309	150	166	14.7995
ffffqqqqqqqqffff	chr17:70571886-70572144(-)$1	258	29	45	12.4081
"cccqqqqqqqqccc4	chr5:95273390-95273652(-)$1	262	22	38	13.4494
ddddqqqqqqqqdddd	chr16:50650543-50650795(+)$1	252	85	101	14.7995
eeeeqqqqqqqqeeee	chrX:132712246-132712498(-)$1	252	187	203	13.7172
eeeeqqqqqqqqeeee	chr22:22121532-22121821(-)$1	289	76	92	13.7172
ddddqqqqqqqqdddd	chr8:22227949-22228220(+)$1	271	29	45	14.7995
ddddqqqqqqqqdddd	chr6:41537387-41537672(+)$1	285	138	154	14.7995
[cccqqqqqqqqccc]	chr17:80230609-80230859(-)$1	250	114	130	13.6071
!cccqqqqqqqqccc]	chr1:46768023-46768354(-)$1	331	256	272	13.6190
e[bbqqqqqqqqbb]e	chr1:231981041-231981322(+)$1	281	51	67	12.2351
ffffqqqqqqqqffff	chr1:43407490-43407789(-)$1	299	162	178	12.4081
ddddqqqqqqqqdddd	chr11:2713291-2713589(-)$1	298	280	296	14.7995
ddddqqqqqqqqdddd	chr17:41620369-41620650(-)$1	281	162	178	14.7995
ddddqqqqqqqqdddd	chr6:119643152-119643467(-)$1	315	49	65	14.7995
ff[aqqqqqqqqa]ff	chr14:69428990-69429297(-)$1	307	195	211	12.8206
ddddqqqqqqqqdddd	chrX:133075329-133075586(-)$1	257	121	137	14.7995
ddddqqqqqqqqdddd	chr8:128843752-128844056(+)$1	304	156	172	14.7995
eeeeqqqqqqqqeeee	chr6:2123508-2123782(-)$1	274	96	112	13.7172
c[bbqqqqqqqqbbcc	chr7:137646043-137646299(-)$1	256	132	148	12.2124
ggggqqqqqqqqgggg	chrX:133032746-133033014(-)$1	268	16	32	12.9561
c[bbqqqqqqqqbb]c	chrX:133044364-133044620(-)$1	256	147	163	12.0238
ffffqqqqqqqqffff	chr15:67466195-67466484(+)$1	289	218	234	12.4081
[cccqqqqqqqqcccb	chr15:102015064-102015314(-)$1	250	136	152	13.2670
"cccqqqqqqqqccc3	chrX:133008838-133009089(-)$1	251	226	242	13.4213
dd[aqqqqqqqqa]dd	chr3:49045978-49046226(+)$1	248	18	34	14.0309
ddddqqqqqqqqdddd	chrX:132925478-132925736(-)$1	258	205	221	14.7995
eeeeqqqqqqqqeeee	chr17:7309501-7309762(+)$1	261	241	257	13.7172
[cccqqqqqqqqcccf	chr7:137681299-137681593(-)$1	294	55	71	13.5307
ddddqqqqqqqqdddd	chr11:120089746-120090019(+)$1	273	201	217	14.7995
ddddqqqqqqqqdddd	chr17:1465455-1465709(-)$1	254	167	183	14.7995
ddddqqqqqqqqdddd	chrX:133056085-133056340(-)$1	255	63	79	14.7995
ddddqqqqqqqqdddd	chr11:2713100-2713371(-)$1	271	185	201	14.7995
eeeeqqqqqqqqeeee	chr3:195636217-195636550(-)$1	333	10	26	13.7172
Fcccqqqqqqqqcccg	chr15:101998647-101998944(-)$1	297	231	247	13.1072
ddddqqqqqqqqdddd	chr11:2714038-2714285(-)$1	247	226	242	14.7995
ddddqqqqqqqqdddd	chr16:50652718-50652990(+)$1	272	117	133	14.7995
ffffqqqqqqqqffff	chr20:25528962-25529243(-)$1	281	51	67	12.4081
eeeeqqqqqqqqeeee	chr13:33838197-33838460(-)$1	263	11	27	13.7172
"cccqqqqqqqqccc]	chr10:77472109-77472368(+)$1	259	53	69	13.4994
dcccqqqqqqqqccc]	chr17:4915893-4916201(+)$1	308	245	261	13.7919
ee[aqqqqqqqqaeee	chr10:105404893-105405181(-)$1	288	146	162	13.6495
ddddqqqqqqqqdddd	chr3:61564245-61564520(+)$1	275	226	242	14.7995
ddddqqqqqqqqdddd	chr17:1465385-1465655(-)$1	270	113	129	14.7995
ddddqqqqqqqqdddd	chr11:2693803-2694047(-)$1	244	149	165	14.7995
ddddqqqqqqqqdddd	chr17:55755228-55755483(+)$1	255	1	17	14.7995
cc[aqqqqqqqqaccc	chr16:50615676-50615934(+)$1	258	26	42	13.4276
gg[aqqqqqqqqa]gg	chrM:3117-3326(+)$1	209	65	81	13.0933
ddddqqqqqqqqdddd	chr11:2713054-2713280(-)$1	226	94	110	14.7995

#otherMatches

#Seq PSSM
GCUGGGAGGACACAGG	chr11:102047441-102047752(+)$1	311	99	115	13.6071
GGGCAUAUCGAGGCCU	chr6:16419083-16419330(-)$1	247	146	162	14.7995
CAGGAAAAAUGAUCUG	chr3:37926898-37927196(+)$1	298	245	261	14.7995
aagcauucuaaggcuu	chr6:52414808-52415193(-)$1	385	48	64	14.7995
ggacaaagacagguuc	chr20:47548982-47549255(+)$1	273	246	262	13.7172
GGGCUGGGUGGUGUUG	chr2:73187586-73187894(-)$1	308	113	129	13.6071
UCUUAAGUAAAAGAGA	chr7:29319184-29319490(+)$1	306	268	284	14.7995
gccugggcucuggggc	chr22:24496832-24497059(+)$1	227	94	110	14.7995
GCCUAGUGUUAGGGGC	chrX:132947191-132947445(-)$1	254	204	220	13.7172
CUAUUUGCUGUUAUAG	chr6:47273430-47273681(-)$1	251	213	229	12.4081
ggUGGACAUUGACAAC	chr19:878832-879097(-)$1	265	182	198	13.5871
uucugggcauggggga	chr1:55326035-55326320(-)$1	285	107	123	13.7172
UUAGAAACUUUCCAAA	chr11:65192500-65192758(+)$1	258	131	147	14.0309
UCCAGGAAAUGAUGGA	chr3:187874122-187874408(+)$1	286	11	27	14.7995
CAAACAAUUGUUUUUG	chr17:53348660-53348892(+)$1	232	36	52	13.7172
GCUGUGGGAUGUCAGU	chr2:102321648-102321957(+)$1	309	150	166	14.7995
AGACGAUUUUUAGUCU	chr17:70571886-70572144(-)$1	258	29	45	12.4081
AGAUAAAAAUAAAUCC	chr5:95273390-95273652(-)$1	262	22	38	13.4494
GUACAGAAUAAAGUGC	chr16:50650543-50650795(+)$1	252	85	101	14.7995
auuuaagaagaagaau	chrX:132712246-132712498(-)$1	252	187	203	13.7172
CUCUCAAACCCAAGGG	chr22:22121532-22121821(-)$1	289	76	92	13.7172
Caaccauggaauguug	chr8:22227949-22228220(+)$1	271	29	45	14.7995
AACUCCCACUGCAGUU	chr6:41537387-41537672(+)$1	285	138	154	14.7995
ggccgcgaagcgggCG	chr17:80230609-80230859(-)$1	250	114	130	13.6071
ACCCGCAGGACAGGGA	chr1:46768023-46768354(-)$1	331	256	272	13.6190
UUugaaugaauacaug	chr1:231981041-231981322(+)$1	281	51	67	12.2351
AGUCACCAGGAAGGCU	chr1:43407490-43407789(-)$1	299	162	178	12.4081
GACUGGAAUGUGGGUC	chr11:2713291-2713589(-)$1	298	280	296	14.7995
UGGUGAUGGAUGGCCA	chr17:41620369-41620650(-)$1	281	162	178	14.7995
ACAGACAUACAGCUGU	chr6:119643152-119643467(-)$1	315	49	65	14.7995
GGGAACCAUCACUGCC	chr14:69428990-69429297(-)$1	307	195	211	12.8206
UCUGUACUAUAUCAGA	chrX:133075329-133075586(-)$1	257	121	137	14.7995
ggcagaaaaacaugcc	chr8:128843752-128844056(+)$1	304	156	172	14.7995
GAUGUUGUUGUGUAUC	chr6:2123508-2123782(-)$1	274	96	112	13.7172
AAGGAGAGAAAGCCUG	chr7:137646043-137646299(-)$1	256	132	148	12.2124
CAGUACAGGCCAACUG	chrX:133032746-133033014(-)$1	268	16	32	12.9561
uggaacuagcacucaa	chrX:133044364-133044620(-)$1	256	147	163	12.0238
GCCUGAGAGAAGGGGU	chr15:67466195-67466484(+)$1	289	218	234	12.4081
gugcUUUAAUCUGCAU	chr15:102015064-102015314(-)$1	250	136	152	13.2670
AGUAUAGGCAAUUGCA	chrX:133008838-133009089(-)$1	251	226	242	13.4213
caagaggguaagcaug	chr3:49045978-49046226(+)$1	248	18	34	14.0309
uucuauguaucaggaa	chrX:132925478-132925736(-)$1	258	205	221	14.7995
AGGAAAAGGAGAUCCU	chr17:7309501-7309762(+)$1	261	241	257	13.7172
ACAGUUUUAUAUCUGG	chr7:137681299-137681593(-)$1	294	55	71	13.5307
GUGGAACAGGAGCCAC	chr11:120089746-120090019(+)$1	273	201	217	14.7995
GGGCAUGGAGGGGCCC	chr17:1465455-1465709(-)$1	254	167	183	14.7995
AGGACCAGUCUUUCUU	chrX:133056085-133056340(-)$1	255	63	79	14.7995
UGGCAUUUAGUGGCCA	chr11:2713100-2713371(-)$1	271	185	201	14.7995
gcccggaggcgagggc	chr3:195636217-195636550(-)$1	333	10	26	13.7172
CUGGAGUCUGUACCAA	chr15:101998647-101998944(-)$1	297	231	247	13.1072
AUGAUCAUUGCCUCAU	chr11:2714038-2714285(-)$1	247	226	242	14.7995
CCUGAGGGAAGACAGG	chr16:50652718-50652990(+)$1	272	117	133	14.7995
AGCCGUGGGUGAGGCU	chr20:25528962-25529243(-)$1	281	51	67	12.4081
ugguauuaaacaacca	chr13:33838197-33838460(-)$1	263	11	27	13.7172
AUCCGGAAGCAGGGAG	chr10:77472109-77472368(+)$1	259	53	69	13.4994
UGUUAUAAUGGAAACA	chr17:4915893-4916201(+)$1	308	245	261	13.7919
GGAGAGAAGAUGCCCA	chr10:105404893-105405181(-)$1	288	146	162	13.6495
GGGAAAACCCCAUCCC	chr3:61564245-61564520(+)$1	275	226	242	14.7995
GGGCAUGGAGGGGCCC	chr17:1465385-1465655(-)$1	270	113	129	14.7995
agguccuaucauaucu	chr11:2693803-2694047(-)$1	244	149	165	14.7995
UUGGGAAGAACACCAG	chr17:55755228-55755483(+)$1	255	1	17	14.7995
AGAGGAGUGGGACCUG	chr16:50615676-50615934(+)$1	258	26	42	13.4276
AUCAUCUCAACUUAGU	chrM:3117-3326(+)$1	209	65	81	13.0933
UGGCAUUUAGUGGCCA	chr11:2713054-2713280(-)$1	226	94	110	14.7995

#DB
.(((........))).	chr11:102047441-102047752(+)$1	1	99	115	13.6071
((((........))))	chr6:16419083-16419330(-)$1	1	146	162	14.7995
((((........))))	chr3:37926898-37927196(+)$1	1	245	261	14.7995
((((........))))	chr6:52414808-52415193(-)$1	1	48	64	14.7995
((((........))))	chr20:47548982-47549255(+)$1	1	246	262	13.7172
.(((........))).	chr2:73187586-73187894(-)$1	1	113	129	13.6071
((((........))))	chr7:29319184-29319490(+)$1	1	268	284	14.7995
((((........))))	chr22:24496832-24497059(+)$1	1	94	110	14.7995
((((........))))	chrX:132947191-132947445(-)$1	1	204	220	13.7172
((((........))))	chr6:47273430-47273681(-)$1	1	213	229	12.4081
((((........).))	chr19:878832-879097(-)$1	1	182	198	13.5871
((((........))))	chr1:55326035-55326320(-)$1	1	107	123	13.7172
((.(........).))	chr11:65192500-65192758(+)$1	1	131	147	14.0309
((((........))))	chr3:187874122-187874408(+)$1	1	11	27	14.7995
((((........))))	chr17:53348660-53348892(+)$1	1	36	52	13.7172
((((........))))	chr2:102321648-102321957(+)$1	1	150	166	14.7995
((((........))))	chr17:70571886-70572144(-)$1	1	29	45	12.4081
.(((........))).	chr5:95273390-95273652(-)$1	1	22	38	13.4494
((((........))))	chr16:50650543-50650795(+)$1	1	85	101	14.7995
((((........))))	chrX:132712246-132712498(-)$1	1	187	203	13.7172
((((........))))	chr22:22121532-22121821(-)$1	1	76	92	13.7172
((((........))))	chr8:22227949-22228220(+)$1	1	29	45	14.7995
((((........))))	chr6:41537387-41537672(+)$1	1	138	154	14.7995
.(((........))).	chr17:80230609-80230859(-)$1	1	114	130	13.6071
.(((........))).	chr1:46768023-46768354(-)$1	1	256	272	13.6190
(.((........)).)	chr1:231981041-231981322(+)$1	1	51	67	12.2351
((((........))))	chr1:43407490-43407789(-)$1	1	162	178	12.4081
((((........))))	chr11:2713291-2713589(-)$1	1	280	296	14.7995
((((........))))	chr17:41620369-41620650(-)$1	1	162	178	14.7995
((((........))))	chr6:119643152-119643467(-)$1	1	49	65	14.7995
((.(........).))	chr14:69428990-69429297(-)$1	1	195	211	12.8206
((((........))))	chrX:133075329-133075586(-)$1	1	121	137	14.7995
((((........))))	chr8:128843752-128844056(+)$1	1	156	172	14.7995
((((........))))	chr6:2123508-2123782(-)$1	1	96	112	13.7172
(.((........))))	chr7:137646043-137646299(-)$1	1	132	148	12.2124
((((........))))	chrX:133032746-133033014(-)$1	1	16	32	12.9561
(.((........)).)	chrX:133044364-133044620(-)$1	1	147	163	12.0238
((((........))))	chr15:67466195-67466484(+)$1	1	218	234	12.4081
.(((........))))	chr15:102015064-102015314(-)$1	1	136	152	13.2670
.(((........))).	chrX:133008838-133009089(-)$1	1	226	242	13.4213
((.(........).))	chr3:49045978-49046226(+)$1	1	18	34	14.0309
((((........))))	chrX:132925478-132925736(-)$1	1	205	221	14.7995
((((........))))	chr17:7309501-7309762(+)$1	1	241	257	13.7172
.(((........))))	chr7:137681299-137681593(-)$1	1	55	71	13.5307
((((........))))	chr11:120089746-120090019(+)$1	1	201	217	14.7995
((((........))))	chr17:1465455-1465709(-)$1	1	167	183	14.7995
((((........))))	chrX:133056085-133056340(-)$1	1	63	79	14.7995
((((........))))	chr11:2713100-2713371(-)$1	1	185	201	14.7995
((((........))))	chr3:195636217-195636550(-)$1	1	10	26	13.7172
((((........)))(	chr15:101998647-101998944(-)$1	1	231	247	13.1072
((((........))))	chr11:2714038-2714285(-)$1	1	226	242	14.7995
((((........))))	chr16:50652718-50652990(+)$1	1	117	133	14.7995
((((........))))	chr20:25528962-25529243(-)$1	1	51	67	12.4081
((((........))))	chr13:33838197-33838460(-)$1	1	11	27	13.7172
.(((........))).	chr10:77472109-77472368(+)$1	1	53	69	13.4994
((((........))).	chr17:4915893-4916201(+)$1	1	245	261	13.7919
((.(........))))	chr10:105404893-105405181(-)$1	1	146	162	13.6495
((((........))))	chr3:61564245-61564520(+)$1	1	226	242	14.7995
((((........))))	chr17:1465385-1465655(-)$1	1	113	129	14.7995
((((........))))	chr11:2693803-2694047(-)$1	1	149	165	14.7995
((((........))))	chr17:55755228-55755483(+)$1	1	1	17	14.7995
((.(........))))	chr16:50615676-50615934(+)$1	1	26	42	13.4276
((.(........).))	chrM:3117-3326(+)$1	1	65	81	13.0933
((((........))))	chr11:2713054-2713280(-)$1	1	94	110	14.7995

#PSSM
d : 0.46	e : 0.20	f : 0.09	[ : 0.07	" : 0.04	c : 0.04	g : 0.03	! : 0.01	F : 0.01	
d : 0.45	c : 0.18	e : 0.18	f : 0.09	[ : 0.04	g : 0.03	
d : 0.42	c : 0.17	e : 0.17	[ : 0.09	f : 0.07	b : 0.04	g : 0.01	
d : 0.42	c : 0.17	e : 0.15	a : 0.10	f : 0.07	b : 0.04	g : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.42	c : 0.17	e : 0.15	a : 0.10	f : 0.07	b : 0.04	g : 0.01	
d : 0.42	c : 0.18	e : 0.17	f : 0.07	] : 0.07	b : 0.04	g : 0.01	
d : 0.45	c : 0.20	e : 0.18	f : 0.09	] : 0.03	g : 0.03	
d : 0.45	e : 0.20	f : 0.10	] : 0.09	c : 0.04	g : 0.04	4 : 0.01	b : 0.01	3 : 0.01	

#score	891.3776918219193
#seq	64
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_UTR_m2_run2.txt

#BEAR
eeeeedddd[cccmmmmccc]dddd]eeee	chr19:49588626-49588857(+)$1	231	97	127	10.2834
ccc####eeeeemmmmeeeee333ccc]a]	chr6:26285260-26285479(-)$1	219	170	200	10.5933
[eeeee!!ddddaooooooa]ddddeeeee	chr1:227505698-227506107(-)$1	409	347	377	11.4912
ggggggg[ddddmmmmdddd333ggggggg	chr2:191513649-191513934(+)$1	285	26	56	14.0198
ffff####ddddmmmmdddd333ffffff:	chr7:128694849-128695091(-)$1	242	118	148	12.8448
a!!ccc!!ddddmmmmddddccc22a]bb]	chr20:2451309-2451535(-)$1	226	57	87	12.3959
ggggbb!!ddddllldddd22bb]gggggg	chr3:12705315-12705635(-)$1	320	241	271	10.5517
cceeeee[cccooooooccc]eeeee]ccc	chr19:12912452-12912706(-)$1	254	171	201	10.9449
hhhhhh!!ddddmmmmdddd22hhhhhhhh	chr15:30114169-30114419(-)$1	250	205	235	11.8962
dddd####ddddnnnnndddddddd]cccF	chr9:35072332-35072574(-)$1	242	127	157	10.7467
[eeeee!!ddddmmmmdddd22eeeeeccc	chr7:150068535-150068792(+)$1	257	11	41	14.3594
[eeeee####bboooooobb333eeeee]b	chr11:46403154-46403400(+)$1	246	136	166	10.0912
iiiiddddddddmmmmdddd]dddd]iiii	chr1:11072618-11072888(+)$1	270	15	45	13.0803
eeeeegggggggmmmmggggggg333eeee	chr1:21113612-21113897(-)$1	285	234	264	9.6947
ccccc"""ddddmmmmdddd333ccc]ccc	chr22:39916691-39916968(+)$1	277	221	251	14.7255
ddd####ddddammmma]ddddddddccce	chr2:47136114-47136413(-)$1	299	145	175	11.7734
$$bb####ddddmmmmdddd333bb4444b	chr16:87425845-87426185(+)$1	340	77	107	12.5351
eeeee!!a[ddddllldddd]a]eeeee]b	chr19:41770220-41770570(+)$1	350	287	317	12.8658
ffff[a[ddddnnnnndddd]a]ffffff]	chr10:103874490-103874763(-)$1	273	167	197	10.4447
iiiiiiii[cccmmmmccc22iiiiiiiii	chr1:2126003-2126296(-)$1	293	10	40	11.1041
eeeee"""ddddmmmmdddd]eeeeeeeee	chr1:235292002-235292249(-)$1	247	150	180	14.8463
:bb[ddddddddmmmmdddd333dddd]bb	chr2:86668449-86668699(+)$1	250	20	50	11.0760
[dddd"""ddddmmmmdddd]dddddddd:	chr11:62609016-62609227(-)$1	211	61	91	13.2513
dd[eeeeeddddmmmmdddd]eeeee]ddd	chr5:109025231-109025522(+)$1	291	43	73	12.4271
a[ccc[a[a[cccmmmmccc]a]a]ccc]a	chr16:28223011-28223337(-)$1	326	117	147	10.6674
[dddd"""ddddmmmmdddd]ddddbb]bb	chr11:118272230-118272474(+)$1	244	211	241	13.4167
[ggggggg[cccmmmmccc]ggggggg]ee	chr19:3062259-3062532(-)$1	273	48	78	10.5091
ccc[ccc[ddddmmmmdddd]ccc22ccc2	chr8:126010695-126010944(+)$1	249	113	143	13.1470
gggcccddddoooooodddd]cccbb[ddd	chr22:19711434-19711689(+)$1	255	53	83	10.2199
eee[ccc[cccooooooccc22ccc]eeee	chr9:140149782-140150082(+)$1	300	245	275	11.2492
!dddd[a[cccooooooccc]a]dddd333	chr5:177631464-177631704(+)$1	240	6	36	11.5848
a[eeeee[ddddmmmmdddd]eeeee]a44	chr8:146017402-146017620(-)$1	218	146	176	13.6054
!dddd[ddddooooooddddddddffffff	chr12:56522239-56522500(+)$1	261	24	54	10.1841
b[ccc!!ddddnnnnndddd22ccc]bb]h	chr9:139304792-139305054(-)$1	262	168	198	10.5135
ggggg!!dddd[allla]ddddggggggg]	chr19:15442613-15442859(-)$1	246	19	49	11.1479
eeeee"""ddddmmmmdddd]eeeeeeeee	chr1:235291956-235292194(-)$1	238	95	125	14.8463
""eeeee[ddddmmmmdddd]eeeee4444	chr19:1206247-1206494(+)$1	247	82	112	13.4171
hh!!ccc[ddddooooooddddccc4444h	chr19:1652277-1652552(-)$1	275	162	192	11.1789
hhddddddddoooooodddd]dddd333hh	chr22:19467370-19467628(+)$1	258	95	125	10.8715
eeeee"""eeeeemmmmeeeee]eeeee22	chr19:39337856-39338123(-)$1	267	89	119	10.0552
eeee[a"""cccmmmmccc333a]eeeeee	chr10:105726970-105727225(+)$1	255	168	198	12.7298
eeee####ddddnnnnndddd]eeeee===	chr14:35761626-35761857(+)$1	231	31	61	11.9724
eeeedddd[cccmmmmcccdddd333eeee	chr10:126107340-126107580(-)$1	240	112	142	10.6953
iiiiiiiddddnnnnndddd]iiiiiiiii	chrX:153060006-153060310(+)$1	304	237	267	11.0550
ee[ddddaddddmmmmdddd]a]dddd]ee	chr16:18812652-18812932(-)$1	280	105	135	13.1850
cc!!ccc[ddddooooooddddccc]ccc:	chr12:120638432-120638658(-)$1	226	191	221	10.7551
gggg####ddddmmmmdddd4444gggggg	chr9:111775567-111775845(-)$1	278	244	274	14.4310
ffeeeee!!cccmmmmccc333eeeeeccc	chr19:5719750-5720047(-)$1	297	23	53	11.8255
fff[ccc[ddddmmmmddddccc333ffff	chr16:89556833-89557063(-)$1	230	62	92	12.2685
a!!ccc[acccooooooccc]a]ccc22ai	chr6:26204761-26205028(+)$1	267	12	42	10.7246
eeeee"""a[cccmmmmccc]a]eeeee::	chr15:44085072-44085306(+)$1	234	99	129	10.1639
ddd[ccc!!cccmmmmccc22ccc]dddd]	chr2:111880117-111880382(+)$1	265	180	210	10.9739
ddd"""a[ddddmmmmdddd]a]dddd]a2	chr5:218342-218745(+)$1	403	123	153	13.9365
hhhhh####ddddllldddd333hhhhhhh	chr11:122932670-122932908(-)$1	238	51	81	11.3624
eeee[ccc!!bbmmmmbb333ccc]eeeee	chr6:32940533-32940748(+)$1	215	70	100	9.6960
bdddd"""cccooooooccc]dddd]bb22	chr12:116714897-116715236(-)$1	339	269	299	10.6809

#otherMatches

#Seq PSSM
CGCGCGGGUGGCUGAGCAGCGGCCUGGUGC	chr19:49588626-49588857(+)$1	231	97	127	10.2834
CAGAUUUUUGCUGAGAAGUAGUUACUGUGC	chr6:26285260-26285479(-)$1	219	170	200	10.5933
ACGAGCGACCACCGACAUGGAGUGGGCUCG	chr1:227505698-227506107(-)$1	409	347	377	11.4912
UCUCCCAAUGUGACAGCGCGggguggggga	chr2:191513649-191513934(+)$1	285	26	56	14.0198
UUCUGCCCUGGUAACGGCCAAAGAGGAGGA	chr7:128694849-128695091(-)$1	242	118	148	12.8448
GACCGGAAGUAGGUUUCUACCCGACCGCAU	chr20:2451309-2451535(-)$1	226	57	87	12.3959
CUCCCUCACCCGCCGCGGGGAGGAGGAGCG	chr3:12705315-12705635(-)$1	320	241	271	10.5517
CACCUGGCGGGAGGACCCCCUUCAGGCUGC	chr19:12912452-12912706(-)$1	254	171	201	10.9449
GGCCGCCAAGGUGAGCGCCUCCGCGGCCGC	chr15:30114169-30114419(-)$1	250	205	235	11.8962
CUGGAAGAGCCGAGCCCCGGCCCAGUCGGU	chr9:35072332-35072574(-)$1	242	127	157	10.7467
UGGCUUCACACCCGCCGGUGCCAGGCCCGG	chr7:150068535-150068792(+)$1	257	11	41	14.3594
AGCGCGGGCAGCGAGCGAGUGAgcgcgcgg	chr11:46403154-46403400(+)$1	246	136	166	10.0912
CGGUGCCUUCCACCUCUGGACAGGCAACCG	chr1:11072618-11072888(+)$1	270	15	45	13.0803
CGGGGAGUGGGCGCGGGCUCGCUGGGCCCC	chr1:21113612-21113897(-)$1	285	234	264	9.6947
CUCGCGUGCCUGGGAUCGGGAAAGCGUAGU	chr22:39916691-39916968(+)$1	277	221	251	14.7255
CUGCUCUGGGCCUUUUGUGCCCCAGGCGCC	chr2:47136114-47136413(-)$1	299	145	175	11.7734
AAGGGAAGUGGCUAUCGCCAGAGUCGGAUU	chr16:87425845-87426185(+)$1	340	77	107	12.5351
CAGGCGGCGUUGGAGGCCGAGGAGCCUGAC	chr19:41770220-41770570(+)$1	350	287	317	12.8658
CCCGGUGGCCUGGGGAGGGCGGGCGGGCUG	chr10:103874490-103874763(-)$1	273	167	197	10.4447
GCCUCGCUGCAGAGGUCUGGAGGCggggcc	chr1:2126003-2126296(-)$1	293	10	40	11.1041
GAGGGUUCGUGGCCCACCGCUCCUUCGCGG	chr1:235292002-235292249(-)$1	247	150	180	14.8463
GUGUCUUGUGAGAGCUCUUGAACCAAGUCA	chr2:86668449-86668699(+)$1	250	20	50	11.0760
auggaauaggagcuugcuccguccacucca	chr11:62609016-62609227(-)$1	211	61	91	13.2513
AGCGGGCUUCUCUCCGGGGACGGUCCUUUC	chr5:109025231-109025522(+)$1	291	43	73	12.4271
GGCGCGCGCAAGGAUGCUCUAGGGGGCGGC	chr16:28223011-28223337(-)$1	326	117	147	10.6674
AUGUGAGACCGCCGAGGCGGGCACACGGGC	chr11:118272230-118272474(+)$1	244	211	241	13.4167
GUCGCCGCCAUUAGACAAUAGCgguggggc	chr19:3062259-3062532(-)$1	273	48	78	10.5091
CGCCGCGCUGGCGAGAGCCGCCGCCCGCGA	chr8:126010695-126010944(+)$1	249	113	143	13.1470
GCCGCGGGCUGACUUGGGCCUCGCUGCCGA	chr22:19711434-19711689(+)$1	255	53	83	10.2199
UGCACGGAGCCGCUCAAGGCCAUCGAGCAG	chr9:140149782-140150082(+)$1	300	245	275	11.2492
CAGUUUGUUGCGAUGUGGCACCCGGCUCCG	chr5:177631464-177631704(+)$1	240	6	36	11.5848
CUGUGUUCCGCGCGCACGUGAAGCACCGUA	chr8:146017402-146017620(-)$1	218	146	176	13.6054
UGCUGACUUCAUUCGGGAGGCGGUUGCUGG	chr12:56522239-56522500(+)$1	261	24	54	10.1841
CGGGCUAGGCAGGUCGUGCCCCGCCGGGCC	chr9:139304792-139305054(-)$1	262	168	198	10.5135
GUCGGACCCGGGCUUgggcuggccggcggg	chr19:15442613-15442859(-)$1	246	19	49	11.1479
GAGGGUUCGUGGCCCACCGCUCCUUCGCGG	chr1:235291956-235292194(-)$1	238	95	125	14.8463
UCCGCUCGGUCGUCCGCGGCGGAGCGUUUG	chr19:1206247-1206494(+)$1	247	82	112	13.4171
ccggccgcgacgcaccuuuguccggggggg	chr19:1652277-1652552(-)$1	275	162	192	11.1789
GCGCCAGGCGUCCGGCCGCCGUGGCUAUGU	chr22:19467370-19467628(+)$1	258	95	125	10.8715
UUGUCCACAUCAGGGGCCUGAUUGACGGUG	chr19:39337856-39338123(-)$1	267	89	119	10.0552
CGUGACACGGGCCUAAGCCGCCGCCGCGGG	chr10:105726970-105727225(+)$1	255	168	198	12.7298
UGUUUAAAGUAGUGCUUCUACCAACAUGUC	chr14:35761626-35761857(+)$1	231	31	61	11.9724
UACCCGGUUGUCCUCAGGCGCUGUCAGGUA	chr10:126107340-126107580(-)$1	240	112	142	10.6953
CUCUGACCCACGGCAGGUGGUGUUGGGGGC	chrX:153060006-153060310(+)$1	304	237	267	11.0550
GAGGUGGCCUGCGCUUGUAGAGACUGCAUC	chr16:18812652-18812932(-)$1	280	105	135	13.1850
cuaugugcugagggucuacucacaccggcu	chr12:120638432-120638658(-)$1	226	191	221	10.7551
UACUCCCGCUGGUUUCUCAGGUAAAGUGGC	chr9:111775567-111775845(-)$1	278	244	274	14.4310
CCGAGGCCAGCGGACCUGCGACGCCUCUCC	chr19:5719750-5720047(-)$1	297	23	53	11.8255
UCCCGCCGCAGCCGCCGCUGGGUCCUGGAG	chr16:89556833-89557063(-)$1	230	62	92	12.2685
GUUUUCAGUCUUCAUUUAGGUCCGAAUUCC	chr6:26204761-26205028(+)$1	267	12	42	10.7246
GGCGGUAACCAGCGUGAGCUCGCCCGCCAG	chr15:44085072-44085306(+)$1	234	99	129	10.1639
ccggcggagcgcggcggcggGCUGGCGGGA	chr2:111880117-111880382(+)$1	265	180	210	10.9739
CAGACAUGUCGGGGGUCCGGGGCCUGUCGC	chr5:218342-218745(+)$1	403	123	153	13.9365
GGCGGAAACCGGUCUCAUUGAACUCGCCUG	chr11:122932670-122932908(-)$1	238	51	81	11.3624
CGGGCGGUGAGGGGAACCGAGGCCACCCGG	chr6:32940533-32940748(+)$1	215	70	100	9.6960
cccgcucugGCGGCCGGGCUCGCGGAGGAU	chr12:116714897-116715236(-)$1	339	269	299	10.6809

#DB
(((((((((.(((....))).)))).))))	chr19:49588626-49588857(+)$1	1	97	127	10.2834
(((....(((((....)))))...))).).	chr6:26285260-26285479(-)$1	1	170	200	10.5933
.(((((..(((((......).)))))))))	chr1:227505698-227506107(-)$1	1	347	377	11.4912
(((((((.((((....))))...)))))))	chr2:191513649-191513934(+)$1	1	26	56	14.0198
((((....((((....))))...)))))).	chr7:128694849-128695091(-)$1	1	118	148	12.8448
(..(((..((((....)))))))..).)).	chr20:2451309-2451535(-)$1	1	57	87	12.3959
((((((..((((...))))..)).))))))	chr3:12705315-12705635(-)$1	1	241	271	10.5517
(((((((.(((......))).))))).)))	chr19:12912452-12912706(-)$1	1	171	201	10.9449
((((((..((((....))))..))))))))	chr15:30114169-30114419(-)$1	1	205	235	11.8962
((((....((((.....)))))))).))))	chr9:35072332-35072574(-)$1	1	127	157	10.7467
.(((((..((((....))))..))))))))	chr7:150068535-150068792(+)$1	1	11	41	14.3594
.(((((....((......))...))))).)	chr11:46403154-46403400(+)$1	1	136	166	10.0912
((((((((((((....)))).)))).))))	chr1:11072618-11072888(+)$1	1	15	45	13.0803
((((((((((((....)))))))...))))	chr1:21113612-21113897(-)$1	1	234	264	9.6947
(((((...((((....))))...))).)))	chr22:39916691-39916968(+)$1	1	221	251	14.7255
(((....(((((....).))))))))))))	chr2:47136114-47136413(-)$1	1	145	175	11.7734
..((....((((....))))...))....)	chr16:87425845-87426185(+)$1	1	77	107	12.5351
(((((..(.((((...)))).).))))).)	chr19:41770220-41770570(+)$1	1	287	317	12.8658
((((.(.((((.....)))).).)))))).	chr10:103874490-103874763(-)$1	1	167	197	10.4447
((((((((.(((....)))..)))))))))	chr1:2126003-2126296(-)$1	1	10	40	11.1041
(((((...((((....)))).)))))((((	chr1:235292002-235292249(-)$1	1	150	180	14.8463
.((.((((((((....))))...)))).))	chr2:86668449-86668699(+)$1	1	20	50	11.0760
.((((...((((....)))).)))))))).	chr11:62609016-62609227(-)$1	1	61	91	13.2513
((.(((((((((....)))).))))).)))	chr5:109025231-109025522(+)$1	1	43	73	12.4271
(.(((.(.(.(((....))).).).))).)	chr16:28223011-28223337(-)$1	1	117	147	10.6674
.((((...((((....)))).)))))).))	chr11:118272230-118272474(+)$1	1	211	241	13.4167
.(((((((.(((....))).))))))).))	chr19:3062259-3062532(-)$1	1	48	78	10.5091
(((.(((.((((....)))).)))..))).	chr8:126010695-126010944(+)$1	1	113	143	13.1470
)))(((((((......)))).)))((.(((	chr22:19711434-19711689(+)$1	1	53	83	10.2199
(((.(((.(((......)))..))).))))	chr9:140149782-140150082(+)$1	1	245	275	11.2492
.((((.(.(((......))).).))))...	chr5:177631464-177631704(+)$1	1	6	36	11.5848
(.(((((.((((....)))).))))).)..	chr8:146017402-146017620(-)$1	1	146	176	13.6054
.((((.((((......))))))))))))))	chr12:56522239-56522500(+)$1	1	24	54	10.1841
(.(((..((((.....))))..))).)).)	chr9:139304792-139305054(-)$1	1	168	198	10.5135
(((((..((((.(...).))))))))))).	chr19:15442613-15442859(-)$1	1	19	49	11.1479
(((((...((((....)))).)))))((((	chr1:235291956-235292194(-)$1	1	95	125	14.8463
..(((((.((((....)))).)))))....	chr19:1206247-1206494(+)$1	1	82	112	13.4171
((..(((.((((......)))))))....)	chr19:1652277-1652552(-)$1	1	162	192	11.1789
((((((((((......)))).))))...))	chr22:19467370-19467628(+)$1	1	95	125	10.8715
(((((...(((((....))))).)))))..	chr19:39337856-39338123(-)$1	1	89	119	10.0552
((((.(...(((....)))...).))))))	chr10:105726970-105727225(+)$1	1	168	198	12.7298
((((....((((.....)))).))))))))	chr14:35761626-35761857(+)$1	1	31	61	11.9724
((((((((.(((....)))))))...))))	chr10:126107340-126107580(-)$1	1	112	142	10.6953
(((((((((((.....)))).)))))))))	chrX:153060006-153060310(+)$1	1	237	267	11.0550
((.(((((((((....)))).).)))).))	chr16:18812652-18812932(-)$1	1	105	135	13.1850
((..(((.((((......))))))).))).	chr12:120638432-120638658(-)$1	1	191	221	10.7551
((((....((((....))))....))))))	chr9:111775567-111775845(-)$1	1	244	274	14.4310
))(((((..(((....)))...)))))(((	chr19:5719750-5720047(-)$1	1	23	53	11.8255
(((.(((.((((....)))))))...))))	chr16:89556833-89557063(-)$1	1	62	92	12.2685
(..(((.((((......))).).)))..)(	chr6:26204761-26205028(+)$1	1	12	42	10.7246
(((((...(.(((....))).).)))))..	chr15:44085072-44085306(+)$1	1	99	129	10.1639
(((.(((..(((....)))..))).)))).	chr2:111880117-111880382(+)$1	1	180	210	10.9739
(((...(.((((....)))).).)))).).	chr5:218342-218745(+)$1	1	123	153	13.9365
(((((....((((...))))...)))))))	chr11:122932670-122932908(-)$1	1	51	81	11.3624
((((.(((..((....))...))).)))))	chr6:32940533-32940748(+)$1	1	70	100	9.6960
(((((...(((......))).)))).))..	chr12:116714897-116715236(-)$1	1	269	299	10.6809

#PSSM
e : 0.23	[ : 0.10	c : 0.08	g : 0.08	d : 0.08	f : 0.07	a : 0.07	h : 0.07	i : 0.05	! : 0.03	b : 0.03	$ : 0.01	: : 0.01	" : 0.01	
e : 0.28	d : 0.17	g : 0.10	c : 0.08	f : 0.07	h : 0.07	i : 0.05	[ : 0.05	! : 0.03	$ : 0.01	b : 0.01	" : 0.01	
e : 0.33	d : 0.17	g : 0.10	c : 0.08	! : 0.07	f : 0.05	i : 0.05	h : 0.03	b : 0.03	[ : 0.03	
e : 0.33	d : 0.14	c : 0.10	g : 0.08	[ : 0.08	i : 0.05	# : 0.03	f : 0.03	h : 0.03	! : 0.03	b : 0.01	" : 0.01	
e : 0.26	c : 0.21	d : 0.17	# : 0.12	g : 0.05	[ : 0.05	h : 0.03	i : 0.03	b : 0.01	" : 0.01	
c : 0.17	" : 0.16	# : 0.14	e : 0.14	d : 0.10	g : 0.05	! : 0.05	[ : 0.05	a : 0.03	i : 0.03	b : 0.01	h : 0.01	
# : 0.16	" : 0.16	d : 0.14	! : 0.14	c : 0.12	e : 0.08	g : 0.05	a : 0.05	[ : 0.03	i : 0.03	
d : 0.21	[ : 0.21	" : 0.16	! : 0.12	# : 0.12	a : 0.05	e : 0.03	g : 0.03	i : 0.01	c : 0.01	
d : 0.64	c : 0.08	[ : 0.07	! : 0.05	e : 0.03	# : 0.03	a : 0.03	g : 0.01	" : 0.01	
d : 0.66	c : 0.19	[ : 0.05	e : 0.03	# : 0.01	g : 0.01	! : 0.01	
d : 0.60	c : 0.24	o : 0.05	e : 0.03	b : 0.03	g : 0.01	
d : 0.51	c : 0.16	o : 0.14	n : 0.05	e : 0.03	b : 0.03	g : 0.01	a : 0.01	[ : 0.01	
m : 0.55	o : 0.19	n : 0.08	c : 0.05	a : 0.03	d : 0.03	l : 0.01	e : 0.01	
m : 0.62	o : 0.21	n : 0.08	l : 0.07	
m : 0.62	o : 0.21	n : 0.08	l : 0.07	
m : 0.62	o : 0.21	n : 0.08	l : 0.05	d : 0.01	
d : 0.53	o : 0.16	c : 0.10	m : 0.07	n : 0.03	a : 0.03	e : 0.01	g : 0.01	b : 0.01	
d : 0.57	c : 0.24	o : 0.07	e : 0.03	] : 0.03	g : 0.01	b : 0.01	
d : 0.64	c : 0.24	e : 0.03	o : 0.01	b : 0.01	g : 0.01	3 : 0.01	
d : 0.64	c : 0.14	2 : 0.05	3 : 0.05	e : 0.03	a : 0.01	b : 0.01	g : 0.01	] : 0.01	
] : 0.42	3 : 0.17	d : 0.14	2 : 0.12	e : 0.03	c : 0.03	g : 0.03	4 : 0.01	
d : 0.24	3 : 0.17	a : 0.14	e : 0.12	c : 0.10	2 : 0.07	g : 0.03	i : 0.03	b : 0.01	] : 0.01	4 : 0.01	
d : 0.19	c : 0.17	e : 0.16	] : 0.16	3 : 0.14	g : 0.05	i : 0.03	b : 0.01	h : 0.01	a : 0.01	4 : 0.01	
d : 0.24	e : 0.23	c : 0.17	3 : 0.07	g : 0.05	f : 0.03	] : 0.03	h : 0.03	i : 0.03	2 : 0.01	b : 0.01	a : 0.01	4 : 0.01	
e : 0.24	d : 0.23	c : 0.12	g : 0.08	f : 0.05	3 : 0.05	] : 0.05	2 : 0.03	h : 0.03	b : 0.03	i : 0.03	
e : 0.28	] : 0.12	d : 0.12	g : 0.08	c : 0.07	3 : 0.07	f : 0.05	h : 0.03	4 : 0.03	i : 0.03	b : 0.03	a : 0.01	2 : 0.01	
e : 0.28	c : 0.10	d : 0.10	g : 0.08	] : 0.08	f : 0.07	i : 0.05	4 : 0.05	b : 0.05	h : 0.03	[ : 0.01	3 : 0.01	2 : 0.01	
e : 0.23	c : 0.16	] : 0.10	g : 0.07	f : 0.07	d : 0.07	b : 0.05	i : 0.05	4 : 0.05	h : 0.03	3 : 0.03	a : 0.01	= : 0.01	2 : 0.01	
e : 0.19	c : 0.14	g : 0.07	f : 0.07	] : 0.07	4 : 0.07	d : 0.07	a : 0.05	b : 0.05	h : 0.05	i : 0.05	2 : 0.03	3 : 0.01	= : 0.01	: : 0.01	
e : 0.21	] : 0.08	h : 0.08	b : 0.08	: : 0.07	c : 0.07	i : 0.07	2 : 0.07	g : 0.05	d : 0.03	4 : 0.03	f : 0.03	F : 0.01	a : 0.01	3 : 0.01	= : 0.01	

#score	661.1149519794177
#seq	56
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF324PNB_SSB_UTR_m3_run2.txt

#BEAR
GGFFFFFF?????CCCYYBB}AYYGGGGGGGZZZGGGGGG	chr6:31802963-31803166(+)$1	203	141	181	53.4269
GGFFFFFF?????CCCYYBB}AYYGGGGGGGZZZGGGGGG	chr6:31802966-31803178(+)$1	212	138	178	53.4269

#otherMatches

#Seq PSSM
CCCCCUCGGUCCAGCAUUUCUCAGGCUCAACGAGUUCAUG	chr6:31802963-31803166(+)$1	203	141	181	53.4269
CCCCCUCGGUCCAGCAUUUCUCAGGCUCAACGAGUUCAUG	chr6:31802966-31803178(+)$1	212	138	178	53.4269

#DB
)))))))).....)))..)).)..)))))))...))))))	chr6:31802963-31803166(+)$1	1	141	181	53.4269
)))))))).....)))..)).)..)))))))...))))))	chr6:31802966-31803178(+)$1	1	138	178	53.4269

#PSSM
G : 1.00	
G : 1.00	
F : 1.00	
F : 1.00	
F : 1.00	
F : 1.00	
F : 1.00	
F : 1.00	
? : 1.00	
? : 1.00	
? : 1.00	
? : 1.00	
? : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
Y : 1.00	
Y : 1.00	
B : 1.00	
B : 1.00	
} : 1.00	
A : 1.00	
Y : 1.00	
Y : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
Z : 1.00	
Z : 1.00	
Z : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	
G : 1.00	

#score	106.85390385739989
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_transcript_m1_run1.txt

#BEAR
==========[dddd[ddddllldddd]dddd]=======	chr5:176340867-176341132(-)$1	265	86	126	15.6641
::ggggggg"""gggggggmmmmggggggg333ggggggg	chr11:65190835-65191112(+)$1	277	63	103	14.3171
====####ffffff!!cccmmmmccc]ffffff333====	chr19:34882453-34882695(+)$1	242	141	181	14.9996
=====bbeeeee!!ccc[ammmma]ccceeeee]bb333=	chr19:34881589-34881832(+)$1	243	190	230	13.4135
ggg]hhhhhhhh===========!!cccccc[iiiiiiii	chr8:23412155-23412438(+)$1	283	136	176	12.3981
ccciiiiiiiii[bba[bbmmmmbb22a]bb]iiiiiiii	chr19:34883718-34883930(+)$1	212	125	165	14.5416
gggg!!ggggggg"""ddddllldddd4444ggggggggg	chr19:34881896-34882138(+)$1	242	133	173	16.1141
e####ccc[bb!!ccc[aooooooa]ccc22bb]ccc444	chr19:34874952-34875167(+)$1	215	48	88	12.4026
eeeiiiiiiiiibb[ddddmmmmdddd333bb]iiiiiii	chr8:110346478-110346728(+)$1	250	181	221	16.2857
[ffffff####dddd[cccmmmmccc]dddd4444fffff	chr22:49974000-49974249(-)$1	249	63	103	13.3422
eeeiiiiiiiiibb[ddddmmmmdddd333bb]iiiiiii	chr8:110346528-110346753(+)$1	225	131	171	16.2857
iiiiiii!!dddd[ccc[ammmmaccc]dddd]iiiiiii	chr16:88996266-88996507(-)$1	241	192	232	16.0940
iiiiiiiii[bb[ccc[bbmmmmbb]ccc]bb333iiiii	chr14:31344783-31345018(+)$1	235	48	88	15.1113
iiiiiii[ccc[eeeeeooooooeeeeeccc]iiiiiiii	chr6:86324670-86324932(-)$1	262	11	51	13.8783
cc[a[==========cccrrrrrrrrrccc]=========	chr1:203764779-203765030(+)$1	251	26	66	14.4063
ggggggg!!==========mmmm==========]gggggg	chr4:53578779-53579006(+)$1	227	80	120	18.4598
b[ccc$$$$$ccc!!ddddmmmmdddd4444ccc4444cc	chr19:34874494-34874776(+)$1	282	185	225	14.6737
"ggggggg[ccc####cccmmmmccc22ccc22ggggggg	chr1:53750095-53750378(-)$1	283	212	252	16.6958
fff$$$$$===========nnnnn===========4444f	chr22:20095416-20095688(+)$1	272	27	67	13.9795
gg####ccc[ccc!!eeeeellleeeeeccc]cccggggg	chr7:5569352-5569622(-)$1	270	127	167	13.5803
ddd[===========ddddmmmmdddd666666=======	chr16:10479954-10480203(+)$1	249	55	95	14.8317
ee####ggggggg"""cccmmmmccc4444gggggggeee	chr15:66639461-66639675(-)$1	214	124	164	16.3311
iiiiiiii[bb[ccc[ddddllldddd]cccbb]iiiiii	chr7:26233101-26233345(-)$1	244	21	61	15.2571
b[ccc$$$$$ccc!!ddddmmmmdddd4444ccc4444cc	chr19:34874576-34874796(+)$1	220	103	143	14.6737
f####ggggggg####cccmmmmccc4444ggggggg22f	chr19:34885261-34885510(+)$1	249	78	118	16.1696
"""ccc"""ccc[ccc[bboooooobbccc]ccc]ccc33	chr19:34881249-34881484(+)$1	235	64	104	13.1588
]ccc]ccc]ggggggg]bb4444ccc4444iiiiiiiiie	chr2:132041472-132041737(+)$1	265	176	216	12.7210
ccc"""gggggggccc[bbmmmmbb22ccc]ggggggg]c	chr19:34883556-34883813(+)$1	257	187	227	14.4593
e[eeeee[bb[=======================[bb[bb	chr16:30760300-30760548(+)$1	248	47	87	12.2351
gggggg"""==========rrrrrrrrr==========]g	chr3:48642216-48642473(-)$1	257	108	148	14.8302
d"""ffffff####a[bbammmma]bb]a333ffffff33	chr16:31201578-31201815(+)$1	237	98	138	13.5988
ggggggg!!a[gggggggooooooggggggg]aggggggg	chr16:2215615-2215859(+)$1	244	0	40	14.9418
:===========[iiiiiiiii!!==========[ccc[a	chr10:11921070-11921339(-)$1	269	7	47	13.3429
dd####dddd[ccc!!cccmmmmccc]cccdddd333ddd	chr5:179048268-179048515(-)$1	247	189	229	13.3739
c[a[a[============[iiiiiiiii!!==========	chr10:11921143-11921422(-)$1	279	84	124	14.9346
ggg####dddd[a"""ddddllldddd4444a]dddd444	chr11:64541179-64541451(-)$1	272	20	60	13.7338
eggggggg[dddd"""cccmmmmccc]dddd]ggggggg:	chr22:19486925-19487288(+)$1	363	24	64	14.2258
!!ffffff"""ccc[ddddmmmmdddd]ccc22ffffff]	chr19:34882691-34882922(+)$1	231	176	216	15.1896
========="""ggggggg[a####ffffff=========	chr19:34882821-34883027(+)$1	206	4	44	13.3403
"eeeee####dddd[ddddmmmmdddd]dddd333eeeee	chr9:19379271-19379514(-)$1	243	20	60	13.4246
!!ffffff"""ccc[ddddmmmmdddd]ccc22ffffff]	chr19:34882836-34883044(+)$1	208	31	71	15.1896
!!ffffff"""ccc[ddddmmmmdddd]ccc22ffffff]	chr19:34882850-34883058(+)$1	208	17	57	15.1896
[ggggggg!!a[gggggggooooooggggggg]agggggg	chr16:2215659-2215933(+)$1	274	37	77	14.9686
deeeee[dddd[a"""cccmmmmccc333a]dddd22eee	chr3:41281088-41281351(+)$1	263	207	247	12.9473
h!!eeeee!!iiiiiiiiimmmmiiiiiiiii4444eeee	chr6:26027258-26027485(-)$1	227	104	144	15.2188
d[ccc[ccc[a!!bb[ddddllldddd]bb22a]cccccc	chr19:34881015-34881244(+)$1	229	80	120	13.0698
h!!eeeee!!iiiiiiiiimmmmiiiiiiiii4444eeee	chr6:26027307-26027529(-)$1	222	148	188	15.2188
ccc[ccc=============lll=============333c	chr11:65272011-65272216(+)$1	205	79	119	17.6345
=====bbeeeee!!ccc[ammmma]ccceeeee]bb333=	chr19:34881632-34881849(+)$1	217	147	187	13.4135
qccciiiiiiiii[bba[bbmmmmbb22a]bb]iiiiiii	chr19:34883660-34883884(+)$1	224	182	222	12.7965
:ggggggg"""cccddddnnnnndddd]ccc]gggggggd	chr19:49606821-49607075(+)$1	254	149	189	13.0348
c]iiiiiiiii:============ggggggg[dddd[ccc	chr20:45886224-45886514(-)$1	290	108	148	11.2534
!!ffffff"""ccc[ddddmmmmdddd]ccc22ffffff]	chr19:34882738-34882947(+)$1	209	129	169	15.1896
"ggggggg[ccc####cccmmmmccc22ccc22ggggggg	chr1:53750053-53750295(-)$1	242	129	169	16.6958
===================mmmm=================	chr16:30760372-30760730(+)$1	358	14	54	19.5336
ccc[ccc=============lll=============333c	chr11:65271978-65272200(+)$1	222	112	152	17.6345

#otherMatches

#Seq PSSM
uaugguguaugguaugguaugguguaugguaugguaugcu	chr5:176340867-176341132(-)$1	265	86	126	15.6641
CAGCCUGGUGGAGCGUCCAGGUCUGGGUGCGAAGCCAGGC	chr11:65190835-65191112(+)$1	277	63	103	14.3171
AGGAGGUAGGAUCUGGUACAGUUGUGAGGAUCUGGGUCUU	chr19:34882453-34882695(+)$1	242	141	181	14.9996
UCUUCCCGUGUCUGAGGAGGUAGCACCUGGCACAGGUAUG	chr19:34881589-34881832(+)$1	243	190	230	13.4135
GCUGUAGCUUUGGAGAGAGCGACCAGCCUGUCCAGGGGCC	chr8:23412155-23412438(+)$1	283	136	176	12.3981
GGAGGUGGGCCCUGGCACAGGUAUGAGGUCCUGGGUCUGC	chr19:34883718-34883930(+)$1	212	125	165	14.5416
CUUCCAGUGCCUGAGGAGAUAGCAUCUGGCACAGGUAUGA	chr19:34881896-34882138(+)$1	242	133	173	16.1141
GCAGACAGGUCGAGCUGGGUCUGACAAGUGAGGGCUGAAA	chr19:34874952-34875167(+)$1	215	48	88	12.4026
AUUUCGUCGCUGGGAAGGGACGGCCCUCGCCCGCGGUGAU	chr8:110346478-110346728(+)$1	250	181	221	16.2857
gguguauguguaugugauaagugugugguguuugaguaua	chr22:49974000-49974249(-)$1	249	63	103	13.3422
AUUUCGUCGCUGGGAAGGGACGGCCCUCGCCCGCGGUGAU	chr8:110346528-110346753(+)$1	225	131	171	16.2857
AGCUGUGGGUAUUGGUGACUUUUGCGUGGAUGAUGCAGCU	chr16:88996266-88996507(-)$1	241	192	232	16.0940
CUCUACACGCUAGAGAGUUUAAAAAGUUUGUACCACGUGU	chr14:31344783-31345018(+)$1	235	48	88	15.1113
UAACUAUCGUGGUGGAUAUGAAGAUCCAUACUAUGGUUAU	chr6:86324670-86324932(-)$1	262	11	51	13.8783
CUAGUGCUGCUGCUGCUGGGAGGACGACGGACGGCAGCGG	chr1:203764779-203765030(+)$1	251	26	66	14.4063
gcggcccggggggcgggcggcggugcccgucccggggcUG	chr4:53578779-53579006(+)$1	227	80	120	18.4598
UGGGUAAAGGGCCAGAGACCUGGGUCUACAGGGCAGACAU	chr19:34874494-34874776(+)$1	282	185	225	14.6737
UCUGGAGCAUGCAGGAUUUGAUGGAAGGGCAAGGCUCUAG	chr1:53750095-53750378(-)$1	283	212	252	16.6958
GAGGUGAGUGUAAUCAUUUUCCUCAAAUGAUUACAGAAAC	chr22:20095416-20095688(+)$1	272	27	67	13.9795
GGGCCUGGCUUCCUGCCGCGCGCCGCGGGGACGCCUCCGA	chr7:5569352-5569622(-)$1	270	127	167	13.5803
GAGCGGCGAUUGGCGGGGUGGCGGCUCUAGGAGCGUCGGU	chr16:10479954-10480203(+)$1	249	55	95	14.8317
AUACAUGUUUGUUUUUGUUUUUUAACUUUUAACAGAUGUG	chr15:66639461-66639675(-)$1	214	124	164	16.3311
UUUAUAAUAGGUGGCAAUUUUGGAGGUAGCCCCGGUUAUG	chr7:26233101-26233345(-)$1	244	21	61	15.2571
UGGGUAAAGGGCCAGAGACCUGGGUCUACAGGGCAGACAU	chr19:34874576-34874796(+)$1	220	103	143	14.6737
UGUUAGUAUCUGGGGAGGAAGGAUCUGGUACAGGUAUGAG	chr19:34885261-34885510(+)$1	249	78	118	16.1696
GCACCGGUAAGGGGCUCUGGGUCUGCAAGUGUCUAUGGAA	chr19:34881249-34881484(+)$1	235	64	104	13.1588
uacucacuagggucccagucaggggcaucuggucaccuca	chr2:132041472-132041737(+)$1	265	176	216	12.7210
GGAGGUGGGCCCUGGCACAGGUAUGAGGCCUGGGGUCUGU	chr19:34883556-34883813(+)$1	257	187	227	14.4593
ggugguggugguggugguggugguggugguggugguggug	chr16:30760300-30760548(+)$1	248	47	87	12.2351
UUGGUAAACAGACUCUGGGAUCUGUGUCCCCAGAGUCUAU	chr3:48642216-48642473(-)$1	257	108	148	14.8302
guggaggACAGCAGCGAGCUGGUGACUGGAAGUGUCCUAA	chr16:31201578-31201815(+)$1	237	98	138	13.5988
gcgcagccuggucgcaugguuaagcgugugagugcugcgu	chr16:2215615-2215859(+)$1	244	0	40	14.9418
cucuggcuggggcugguugguugucccuggcuggagcggg	chr10:11921070-11921339(-)$1	269	7	47	13.3429
CUUUUGUUGAACUUGAAUCAGAAGAUGAAGUCAAAUUGGC	chr5:179048268-179048515(-)$1	247	189	229	13.3739
aguugucucuggcuggggcugguugguugucccuggcugg	chr10:11921143-11921422(-)$1	279	84	124	14.9346
GGUCUCAUUUUGGGCUAUGUUUAACAUUUAAUGAAGAAAA	chr11:64541179-64541451(-)$1	272	20	60	13.7338
CAGGGCCAGGCUUAGAGGCAGGUGCUGAGGUGUGGCCCUU	chr22:19486925-19487288(+)$1	363	24	64	14.2258
GAGGAUUUGGUUCUGUUCAUGUCUGAGGAGGUAGGAUCUG	chr19:34882691-34882922(+)$1	231	176	216	15.1896
UCUGGGUCUGUCAUGUCUGGAGGUAAGAUCUGGCAUGAGU	chr19:34882821-34883027(+)$1	206	4	44	13.3403
AGAAUGGAAGGUAAAAGUUGACAAAUUGUUGCAGGUAUUU	chr9:19379271-19379514(-)$1	243	20	60	13.4246
GAGGAUUUGGUUCUGUUCAUGUCUGAGGAGGUAGGAUCUG	chr19:34882836-34883044(+)$1	208	31	71	15.1896
GAGGAUUUGGUUCUGUUCAUGUCUGAGGAGGUAGGAUCUG	chr19:34882850-34883058(+)$1	208	17	57	15.1896
ggcgcggccuggUCGCAUGAUUAAGCGUGUGAGUGCUGCG	chr16:2215659-2215933(+)$1	274	37	77	14.9686
CCUUUUUGGUCGAGGAGUAACAAUACAAAUGGAUUUUGGG	chr3:41281088-41281351(+)$1	263	207	247	12.9473
GCCAUUCGGCGCCUUGCUAGGCGUGGUGGGGUUAAGCGAA	chr6:26027258-26027485(-)$1	227	104	144	15.2188
UGAGGAUCUGGGUUUGUCAGUAUCUGAGGAUGUGGGGCCU	chr19:34881015-34881244(+)$1	229	80	120	13.0698
GCCAUUCGGCGCCUUGCUAGGCGUGGUGGGGUUAAGCGAA	chr6:26027307-26027529(-)$1	222	148	188	15.2188
GGUGGUGGGAGGGGACUGAAGCCUUUAGUCUUUUCCAGAU	chr11:65272011-65272216(+)$1	205	79	119	17.6345
UCUUCCCGUGUCUGAGGAGGUAGCACCUGGCACAGGUAUG	chr19:34881632-34881849(+)$1	217	147	187	13.4135
AGGAGGUGGGCCCUGGCACAGGUAUGAGGUCCUGGGUCUG	chr19:34883660-34883884(+)$1	224	182	222	12.7965
UUUGGCCUUCAUGACAGCCCCACGUUGAUCACAGGCCAGG	chr19:49606821-49607075(+)$1	254	149	189	13.0348
auaugguaugaguauauguauguguguauaugguaugaca	chr20:45886224-45886514(-)$1	290	108	148	11.2534
GAGGAUUUGGUUCUGUUCAUGUCUGAGGAGGUAGGAUCUG	chr19:34882738-34882947(+)$1	209	129	169	15.1896
UCUGGAGCAUGCAGGAUUUGAUGGAAGGGCAAGGCUCUAG	chr1:53750053-53750295(-)$1	242	129	169	16.6958
gguggugguggugguggugguggugcugcugcugcugcug	chr16:30760372-30760730(+)$1	358	14	54	19.5336
GGUGGUGGGAGGGGACUGAAGCCUUUAGUCUUUUCCAGAU	chr11:65271978-65272200(+)$1	222	112	152	17.6345

#DB
((((((((((.((((.((((...)))).)))).)))))))	chr5:176340867-176341132(-)$1	1	86	126	15.6641
..(((((((...(((((((....)))))))...)))))))	chr11:65190835-65191112(+)$1	1	63	103	14.3171
((((....((((((..(((....))).))))))...))))	chr19:34882453-34882695(+)$1	1	141	181	14.9996
((((((((((((..(((.(....).)))))))).))...)	chr19:34881589-34881832(+)$1	1	190	230	13.4135
))).))))))))(((((((((((..((((((.((((((((	chr8:23412155-23412438(+)$1	1	136	176	12.3981
((((((((((((.(((.((....))..).)).))))))))	chr19:34883718-34883930(+)$1	1	125	165	14.5416
((((..(((((((...((((...))))....)))))))))	chr19:34881896-34882138(+)$1	1	133	173	16.1141
(....(((.((..(((.(......).)))..)).)))...	chr19:34874952-34875167(+)$1	1	48	88	12.4026
((((((((((((((.((((....))))...)).)))))))	chr8:110346478-110346728(+)$1	1	181	221	16.2857
.((((((....((((.(((....))).))))....)))))	chr22:49974000-49974249(-)$1	1	63	103	13.3422
((((((((((((((.((((....))))...)).)))))))	chr8:110346528-110346753(+)$1	1	131	171	16.2857
(((((((..((((.(((.(....)))).)))).)))))))	chr16:88996266-88996507(-)$1	1	192	232	16.0940
(((((((((.((.(((.((....)).))).))...)))))	chr14:31344783-31345018(+)$1	1	48	88	15.1113
(((((((.(((.(((((......)))))))).))))))))	chr6:86324670-86324932(-)$1	1	11	51	13.8783
((.(.(((((((((((((.........))).)))))))))	chr1:203764779-203765030(+)$1	1	26	66	14.4063
(((((((..((((((((((....)))))))))).))))))	chr4:53578779-53579006(+)$1	1	80	120	18.4598
(.(((.....(((..((((....))))....)))....))	chr19:34874494-34874776(+)$1	1	185	225	14.6737
.(((((((.(((....(((....)))..)))..)))))))	chr1:53750095-53750378(-)$1	1	212	252	16.6958
(((.....(((((((((((.....)))))))))))....)	chr22:20095416-20095688(+)$1	1	27	67	13.9795
((....(((.(((..(((((...)))))))).))))))))	chr7:5569352-5569622(-)$1	1	127	167	13.5803
(((.(((((((((((((((....))))......)))))))	chr16:10479954-10480203(+)$1	1	55	95	14.8317
((....(((((((...(((....)))....))))))))))	chr15:66639461-66639675(-)$1	1	124	164	16.3311
((((((((.((.(((.((((...)))).))))).))))))	chr7:26233101-26233345(-)$1	1	21	61	15.2571
(.(((.....(((..((((....))))....)))....))	chr19:34874576-34874796(+)$1	1	103	143	14.6737
(....(((((((....(((....)))....)))))))..)	chr19:34885261-34885510(+)$1	1	78	118	16.1696
...(((...(((.(((.((......))))).))).)))..	chr19:34881249-34881484(+)$1	1	64	104	13.1588
.))).))).))))))).))....)))....))))))))))	chr2:132041472-132041737(+)$1	1	176	216	12.7210
(((...((((((((((.((....))..))).))))))).)	chr19:34883556-34883813(+)$1	1	187	227	14.4593
(.(((((.((.(((((((((((((((((((((((.((.((	chr16:30760300-30760548(+)$1	1	47	87	12.2351
((((((...((((((((((.........)))))))))).)	chr3:48642216-48642473(-)$1	1	108	148	14.8302
(...((((((....(.(((....).)).)...))))))..	chr16:31201578-31201815(+)$1	1	98	138	13.5988
(((((((..(.(((((((......))))))).))))))))	chr16:2215615-2215859(+)$1	1	0	40	14.9418
.(((((((((((.(((((((((..((((((((((.(((.(	chr10:11921070-11921339(-)$1	1	7	47	13.3429
((....((((.(((..(((....))).)))))))...)))	chr5:179048268-179048515(-)$1	1	189	229	13.3739
(.(.(.((((((((((((.(((((((((..((((((((((	chr10:11921143-11921422(-)$1	1	84	124	14.9346
(((....((((.(...((((...))))....).))))...	chr11:64541179-64541451(-)$1	1	20	60	13.7338
)(((((((.((((...(((....))).)))).))))))).	chr22:19486925-19487288(+)$1	1	24	64	14.2258
..((((((...(((.((((....)))).)))..)))))).	chr19:34882691-34882922(+)$1	1	176	216	15.1896
(((((((((...(((((((.(....(((((((((((((((	chr19:34882821-34883027(+)$1	1	4	44	13.3403
.(((((....((((.((((....)))).))))...)))))	chr9:19379271-19379514(-)$1	1	20	60	13.4246
..((((((...(((.((((....)))).)))..)))))).	chr19:34882836-34883044(+)$1	1	31	71	15.1896
..((((((...(((.((((....)))).)))..)))))).	chr19:34882850-34883058(+)$1	1	17	57	15.1896
.(((((((..(.(((((((......))))))).)))))))	chr16:2215659-2215933(+)$1	1	37	77	14.9686
((((((.((((.(...(((....)))...).))))..)))	chr3:41281088-41281351(+)$1	1	207	247	12.9473
(..(((((..(((((((((....)))))))))....))))	chr6:26027258-26027485(-)$1	1	104	144	15.2188
(.(((.(((.(..((.((((...)))).))..).))))))	chr19:34881015-34881244(+)$1	1	80	120	13.0698
(..(((((..(((((((((....)))))))))....))))	chr6:26027307-26027529(-)$1	1	148	188	15.2188
(((.((((((((((((((((...)))))))))))))...)	chr11:65272011-65272216(+)$1	1	79	119	17.6345
((((((((((((..(((.(....).)))))))).))...)	chr19:34881632-34881849(+)$1	1	147	187	13.4135
.)))(((((((((.(((.((....))..).)).)))))))	chr19:34883660-34883884(+)$1	1	182	222	12.7965
.(((((((...(((((((.....)))).))).)))))))(	chr19:49606821-49607075(+)$1	1	149	189	13.0348
).))))))))).(((((((((((((((((((.((((.(((	chr20:45886224-45886514(-)$1	1	108	148	11.2534
..((((((...(((.((((....)))).)))..)))))).	chr19:34882738-34882947(+)$1	1	129	169	15.1896
.(((((((.(((....(((....)))..)))..)))))))	chr1:53750053-53750295(-)$1	1	129	169	16.6958
(((((((((((((((((((....)))))))))))))))))	chr16:30760372-30760730(+)$1	1	14	54	19.5336
(((.((((((((((((((((...)))))))))))))...)	chr11:65271978-65272200(+)$1	1	112	152	17.6345

#PSSM
g : 0.12	c : 0.12	= : 0.10	e : 0.10	d : 0.08	i : 0.07	" : 0.07	! : 0.07	: : 0.05	[ : 0.03	b : 0.03	f : 0.03	h : 0.03	] : 0.01	q : 0.01	
g : 0.21	= : 0.12	c : 0.12	! : 0.10	e : 0.08	[ : 0.08	i : 0.07	# : 0.03	f : 0.03	d : 0.03	" : 0.03	: : 0.01	] : 0.01	
g : 0.21	c : 0.16	= : 0.12	f : 0.10	# : 0.08	e : 0.08	i : 0.08	" : 0.03	! : 0.03	[ : 0.01	d : 0.01	a : 0.01	
g : 0.17	i : 0.14	= : 0.12	# : 0.10	c : 0.10	f : 0.08	e : 0.08	[ : 0.07	" : 0.03	] : 0.01	a : 0.01	$ : 0.01	
g : 0.16	i : 0.16	= : 0.12	# : 0.12	f : 0.10	c : 0.10	e : 0.08	h : 0.01	! : 0.01	[ : 0.01	$ : 0.01	] : 0.01	" : 0.01	a : 0.01	
g : 0.17	i : 0.16	= : 0.10	f : 0.10	# : 0.08	c : 0.08	e : 0.08	$ : 0.05	b : 0.03	[ : 0.03	h : 0.01	! : 0.01	" : 0.01	
g : 0.21	i : 0.16	= : 0.12	c : 0.10	f : 0.10	# : 0.05	$ : 0.05	e : 0.05	b : 0.03	" : 0.03	h : 0.01	d : 0.01	[ : 0.01	
g : 0.17	= : 0.16	i : 0.12	f : 0.08	e : 0.07	c : 0.07	# : 0.05	! : 0.05	$ : 0.05	d : 0.05	[ : 0.03	" : 0.03	h : 0.01	
= : 0.17	" : 0.12	i : 0.10	! : 0.10	g : 0.08	[ : 0.08	c : 0.05	d : 0.05	f : 0.03	e : 0.03	# : 0.03	$ : 0.03	h : 0.01	] : 0.01	b : 0.01	
= : 0.19	" : 0.12	i : 0.08	g : 0.08	d : 0.08	c : 0.07	b : 0.05	[ : 0.05	! : 0.05	f : 0.03	e : 0.03	# : 0.03	$ : 0.03	h : 0.01	a : 0.01	
= : 0.17	" : 0.12	i : 0.12	c : 0.12	g : 0.08	d : 0.08	[ : 0.07	b : 0.05	e : 0.03	# : 0.03	a : 0.03	f : 0.01	h : 0.01	
c : 0.21	= : 0.19	i : 0.10	g : 0.10	d : 0.08	[ : 0.08	" : 0.03	e : 0.03	! : 0.03	f : 0.01	h : 0.01	b : 0.01	# : 0.01	: : 0.01	
= : 0.21	c : 0.17	g : 0.14	d : 0.08	! : 0.07	[ : 0.07	# : 0.07	i : 0.05	b : 0.03	a : 0.03	f : 0.01	e : 0.01	
= : 0.21	c : 0.19	g : 0.08	! : 0.08	" : 0.08	b : 0.07	# : 0.07	d : 0.05	i : 0.05	[ : 0.03	f : 0.01	e : 0.01	
= : 0.21	c : 0.14	[ : 0.12	g : 0.08	! : 0.08	" : 0.08	d : 0.05	b : 0.05	# : 0.05	i : 0.05	e : 0.01	a : 0.01	
d : 0.19	= : 0.17	c : 0.14	[ : 0.08	g : 0.08	" : 0.08	# : 0.05	i : 0.05	! : 0.03	e : 0.03	a : 0.01	b : 0.01	
d : 0.28	c : 0.23	= : 0.17	[ : 0.08	g : 0.07	i : 0.05	e : 0.03	] : 0.01	b : 0.01	a : 0.01	
d : 0.28	c : 0.17	= : 0.17	b : 0.10	g : 0.07	[ : 0.07	i : 0.05	a : 0.01	o : 0.01	e : 0.01	
d : 0.26	c : 0.16	= : 0.16	b : 0.10	a : 0.07	g : 0.05	o : 0.05	i : 0.05	r : 0.01	e : 0.01	[ : 0.01	n : 0.01	
m : 0.55	d : 0.08	= : 0.08	o : 0.08	r : 0.03	n : 0.03	i : 0.03	e : 0.01	4 : 0.01	[ : 0.01	b : 0.01	
m : 0.57	l : 0.14	o : 0.08	= : 0.05	r : 0.03	n : 0.03	i : 0.03	4 : 0.01	a : 0.01	
m : 0.57	l : 0.14	o : 0.08	= : 0.05	r : 0.03	n : 0.03	i : 0.03	4 : 0.01	# : 0.01	
m : 0.57	l : 0.14	o : 0.08	= : 0.05	r : 0.03	n : 0.03	4 : 0.01	! : 0.01	i : 0.01	# : 0.01	
d : 0.28	c : 0.17	= : 0.10	a : 0.07	o : 0.07	b : 0.05	i : 0.05	! : 0.03	e : 0.03	r : 0.03	g : 0.01	n : 0.01	# : 0.01	m : 0.01	
d : 0.28	c : 0.19	= : 0.12	b : 0.07	g : 0.05	] : 0.05	i : 0.05	e : 0.03	r : 0.03	o : 0.03	! : 0.01	a : 0.01	# : 0.01	
d : 0.28	c : 0.24	= : 0.12	g : 0.07	b : 0.05	i : 0.05	2 : 0.03	] : 0.03	e : 0.03	r : 0.03	f : 0.01	
d : 0.28	= : 0.12	c : 0.10	2 : 0.08	g : 0.07	] : 0.07	4 : 0.05	i : 0.05	e : 0.03	r : 0.03	b : 0.03	f : 0.01	3 : 0.01	
] : 0.19	c : 0.16	4 : 0.12	= : 0.12	g : 0.07	3 : 0.05	2 : 0.05	i : 0.05	f : 0.03	d : 0.03	e : 0.03	a : 0.01	6 : 0.01	r : 0.01	
c : 0.30	= : 0.14	4 : 0.12	d : 0.08	g : 0.07	3 : 0.05	f : 0.03	e : 0.03	a : 0.03	i : 0.03	] : 0.01	6 : 0.01	! : 0.01	b : 0.01	
c : 0.26	= : 0.14	4 : 0.12	d : 0.08	g : 0.07	3 : 0.05	f : 0.03	e : 0.03	b : 0.03	] : 0.03	i : 0.03	2 : 0.01	6 : 0.01	! : 0.01	a : 0.01	
c : 0.19	= : 0.16	d : 0.10	b : 0.08	g : 0.08	4 : 0.07	] : 0.07	i : 0.05	3 : 0.03	f : 0.03	e : 0.03	2 : 0.03	6 : 0.01	
= : 0.19	2 : 0.12	] : 0.10	b : 0.10	d : 0.08	g : 0.08	c : 0.05	i : 0.05	3 : 0.03	e : 0.03	[ : 0.03	f : 0.01	4 : 0.01	6 : 0.01	a : 0.01	
= : 0.19	] : 0.12	g : 0.10	2 : 0.10	i : 0.07	c : 0.07	3 : 0.05	4 : 0.05	d : 0.05	f : 0.03	e : 0.03	b : 0.03	a : 0.03	6 : 0.01	
= : 0.21	g : 0.17	i : 0.14	] : 0.10	f : 0.08	c : 0.07	d : 0.07	3 : 0.05	4 : 0.05	a : 0.01	
g : 0.21	= : 0.17	i : 0.16	4 : 0.08	f : 0.08	3 : 0.07	c : 0.05	d : 0.05	b : 0.03	[ : 0.03	] : 0.01	
g : 0.23	i : 0.17	= : 0.16	f : 0.10	4 : 0.08	c : 0.07	b : 0.05	3 : 0.03	d : 0.03	e : 0.01	2 : 0.01	
g : 0.23	i : 0.17	= : 0.14	f : 0.10	3 : 0.08	c : 0.07	4 : 0.05	e : 0.05	b : 0.01	d : 0.01	2 : 0.01	[ : 0.01	
g : 0.19	i : 0.17	= : 0.14	f : 0.10	4 : 0.08	e : 0.08	3 : 0.07	c : 0.07	2 : 0.01	[ : 0.01	d : 0.01	
g : 0.17	i : 0.17	= : 0.12	3 : 0.10	f : 0.08	e : 0.08	c : 0.07	4 : 0.05	] : 0.03	2 : 0.01	b : 0.01	[ : 0.01	d : 0.01	
= : 0.16	g : 0.16	i : 0.16	c : 0.12	e : 0.10	] : 0.07	f : 0.05	4 : 0.03	3 : 0.03	d : 0.03	b : 0.01	a : 0.01	: : 0.01	

#score	820.408853201483
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_UTR_m2_run1.txt

#BEAR
ggggggg"""a[acccpppppppccc]a]a333ggggggg	chr4:83294795-83295071(-)$1	276	57	97	12.9671
!!hhhhhhhhffffffrrrrrrrrrffffff22hhhhhhh	chr1:205418920-205419162(-)$1	242	124	164	16.9122
!hhhhhhhh$$$$$cccrrrrrrrrrccc333hhhhhhhh	chr4:38870001-38870259(+)$1	258	29	69	16.5201
[eeeee"""gggggggrrrrrrrrrggggggg333eeeee	chr3:49058407-49058718(-)$1	311	49	89	16.6176
eeeeegggggggwwwwwwwwwwwwwwggggggg22eeeee	chr19:56652951-56653258(+)$1	307	194	234	19.5859
h"""ggggggg[ddddpppppppdddd]ggggggghhhhh	chr17:46128250-46128543(+)$1	293	39	79	11.0735
$$$$$dddd[bbrrrrrrrrrbb]dddd4444ggggggg4	chr7:128828630-128828912(+)$1	282	43	83	12.4477
###ccc!!eeeee[ddddrrrrrrrrrdddd]eeeee]cc	chr16:87739054-87739293(-)$1	239	70	110	14.8603
ddd!!===========rrrrrrrrr===========]ddd	chr16:2579691-2579986(+)$1	295	29	69	17.8951
!!ccc[dddd[eeeeerrrrrrrrreeeeedddd]ccc33	chr17:28444025-28444251(+)$1	226	95	135	17.1888
[adddd[bb!!eeeeerrrrrrrrreeeee]bbdddd]a]	chr19:48983011-48983316(+)$1	305	120	160	15.9372
cc[a!!gggggggwwwwwwwwwwwwwwggggggga]ccc]	chr9:35690584-35690872(-)$1	288	162	202	22.1349
"""ggggggg[a!!cccpppppppccc22a22ggggggg4	chr3:195635536-195635820(-)$1	284	180	220	13.4766
!!hhhhhhhhffffffrrrrrrrrrffffff22hhhhhhh	chr1:205418896-205419120(-)$1	224	82	122	16.9122
ccc[ccc####bbvvvvvvvvvvvvvbb4444ccc]ccc]	chr17:7082307-7082564(-)$1	257	51	91	19.8884
bb!!hhhhhhhh[axxxxxxxxxxxxxxxa]hhhhhhhh2	chr16:29985280-29985588(+)$1	308	241	281	17.0995
d!!eeeee[gggggggtttttttttttgggggggeeeee2	chr20:62572796-62573069(-)$1	273	191	231	18.1952
d####==========ttttttttttt==========dddd	chr16:24802021-24802339(+)$1	318	277	317	19.7993
mmmmdddd:gggggggrrrrrrrrrgggggggggggggg!	chr17:57918052-57918290(+)$1	238	76	116	13.6940
iiiii!!fffffftttttttttttffffff22iiiiiiii	chr10:133770920-133771228(+)$1	308	29	69	18.3890
:bb[ffffffffffffrrrrrrrrrffffff333ffffff	chr14:24036469-24036749(-)$1	280	113	153	14.1243
ee!!eeeeeeeeeecccrrrrrrrrrccc333eeeee]ee	chr22:46508667-46508962(+)$1	295	217	257	16.8582
eeeee[iiiiiiiiixxxxxxxxxxxxxxxiiiiiiiii2	chr17:57918344-57918564(+)$1	220	71	111	18.3055
ff"""dddd[eeeeeaqqqqqqqqa]eeeee]dddd4444	chr19:46522267-46522513(+)$1	246	27	67	10.9148
gg[dddd[ggggggguuuuuuuuuuuuggggggg]dddd]	chr9:35689918-35690161(-)$1	243	6	46	19.2358
####ccc[bb^^^^^^^^^^^^^^^^^^bb]ccc333ccc	chr20:57467327-57467612(+)$1	285	59	99	14.9922
dd[eeeee!!cccuuuuuuuuuuuuccc]eeeee22dddd	chr15:34678935-34679214(-)$1	279	79	119	17.3742
eeeebbgggggggcccrrrrrrrrrccc]ggggggg]bb]	chr3:49057757-49058043(-)$1	286	69	109	17.0537
cc[a!!gggggggwwwwwwwwwwwwwwggggggga]ccc]	chr9:35690529-35690784(-)$1	255	74	114	22.1349
mmmmdddd:gggggggrrrrrrrrrgggggggggggggg!	chr17:57918010-57918252(+)$1	242	118	158	13.6940
$$==============ttttttttttt=============	chr19:58991078-58991358(-)$1	280	158	198	20.2098
!!hhhhhhhhffffffrrrrrrrrrffffff22hhhhhhh	chr1:205418847-205419096(-)$1	249	58	98	16.9122
!!ccc[dddd[eeeeerrrrrrrrreeeeedddd]ccc33	chr17:28443932-28444225(+)$1	293	188	228	17.1888
gggg[ccceeeeeuuuuuuuuuuuueeeee4444cccggg	chr6:128327053-128327395(-)$1	342	188	228	19.5004
[ggggggg!!bbyyyyyyyyyyyyyyyybb22ggggggg]	chr12:391395-391697(-)$1	302	62	102	18.1262
!!ggggggg"""cccssssssssssccc4444ggggggg]	chr19:16187719-16188015(+)$1	296	174	214	17.9732
####gggggggeeeeerrrrrrrrreeeee22ggggggg]	chr18:20798956-20799213(+)$1	257	157	197	20.1342
&&&&&eeeeexxxxxxxxxxxxxxxeeeee4444======	chr11:35286743-35287081(-)$1	338	59	99	14.8912
b!!ccc[dddd[eeeeeqqqqqqqqeeeee22dddd]ccc	chr7:128388526-128388813(+)$1	287	24	64	11.5157
iiii[==========wwwwwwwwwwwwww==========]	chr12:58217991-58218476(-)$1	485	21	61	21.9029
!hhhhhhhh$$$$$cccrrrrrrrrrccc333hhhhhhhh	chr4:38869897-38870142(+)$1	245	133	173	16.5201
==="""bb!!cccvvvvvvvvvvvvvccc333bb333===	chr22:41487773-41488046(+)$1	273	22	62	20.8099
iiiiii!!eeeeevvvvvvvvvvvvveeeee]iiiiiiii	chr9:97848170-97848413(+)$1	243	147	187	21.8462
!!ffffff[ddddvvvvvvvvvvvvvdddd333ffffff2	chr17:28443794-28444129(+)$1	335	123	163	18.9343
c[ccca!!eeeeecccooooooccc]eeeee22a]ccc]c	chr7:150066650-150066963(+)$1	313	201	241	11.5465

#otherMatches

#Seq PSSM
GCGAAGGGGGCAGGCCAGGGAGAGGCGCAGGAGCCUUUGC	chr4:83294795-83295071(-)$1	276	57	97	12.9671
GAGGCGGACUGCGAGGGAAAGGGGGCCUUGUUGAGUCCGC	chr1:205418920-205419162(-)$1	242	124	164	16.9122
CUGCCUGCUCUUCCAGUCCAGCCAACACUCUAAGCAGGCA	chr4:38870001-38870259(+)$1	258	29	69	16.5201
ACCCGCGGGGCCGGGCGAGCGGGAAGCUCGGCACAGUGGG	chr3:49058407-49058718(-)$1	311	49	89	16.6176
CCGGACCCCUUCGGAAAGGUUUGCGGGAAGGGGCUUCCGG	chr19:56652951-56653258(+)$1	307	194	234	19.5859
CCUUGGCUCCACAGGGUGUGCUUUCCUCUGGGGCCGUCAG	chr17:46128250-46128543(+)$1	293	39	79	11.0735
GGGAAUGGGGCUGGGGAUUGGGGGCCCAGGGGUCUCCUAG	chr7:128828630-128828912(+)$1	282	43	83	12.4477
UUAGGUGGGAUUCCAAGGAAAAAGAGACUUUUGAAUCAAC	chr16:87739054-87739293(-)$1	239	70	110	14.8603
CACCCAGCAGGACUCGCCUUGGCUCCGGGUUUUGCUUGUG	chr16:2579691-2579986(+)$1	295	29	69	17.8951
AGAGAGCGAGACUUUUCUAUUUUCCAAAAGCUCGGUCUGA	chr17:28444025-28444251(+)$1	226	95	135	17.1888
UGCUGAUGGGAUGUCCUGAAGGGCUGGGCAGCCUUAGAUC	chr19:48983011-48983316(+)$1	305	120	160	15.9372
CCGCAGCCGCGUGGAAAAUAUGCGGGGCACGUGGGGGGCG	chr9:35690584-35690872(-)$1	288	162	202	22.1349
AAGGAGCCCCAGGAGGGAGAGGGACCCGGCGAGGGGCUCA	chr3:195635536-195635820(-)$1	284	180	220	13.4766
GAGGCGGACUGCGAGGGAAAGGGGGCCUUGUUGAGUCCGC	chr1:205418896-205419120(-)$1	224	82	122	16.9122
AGCAAGUAAAAUGGGAAGAGAGGUGGCGGGAGGCUGGCUG	chr17:7082307-7082564(-)$1	257	51	91	19.8884
GAUACCCGGGUAACAGUCCUCAUAGUCCAGAUAUCCGGGA	chr16:29985280-29985588(+)$1	308	241	281	17.0995
CCCGGCCCACUUCUGCUUCCUCUUAGCGCAGGAGGGGUCC	chr20:62572796-62573069(-)$1	273	191	231	18.1952
CUGUAUCAGGGUGGGGCGAUCCCAAACCUGCUCUGAGGUG	chr16:24802021-24802339(+)$1	318	277	317	19.7993
AAAUGGCACCUCUGGGAUUGGCCUACCUGGGGAUUUCUUG	chr17:57918052-57918290(+)$1	238	76	116	13.6940
AGAUGAAGGUGUGUGCUGAUUCCUCAUGCCCCUGUCUGGA	chr10:133770920-133771228(+)$1	308	29	69	18.3890
GGUACCUGUGGGACCCGGGCUCUUAGGGUCUUGACACAGG	chr14:24036469-24036749(-)$1	280	113	153	14.1243
ucaguuuccuccucuguaaaauggaggcaaAUGAGGAUGG	chr22:46508667-46508962(+)$1	295	217	257	16.8582
UGCUUGGGAGGAAAAUAAACAAUUUUACUUUUUUCCUUUA	chr17:57918344-57918564(+)$1	220	71	111	18.3055
CUGGGUUCCAAGCACCAGUGAGGAGAGUGCUGGGAGGGGA	chr19:46522267-46522513(+)$1	246	27	67	10.9148
CCAGCCGACCGUCGGCCACUUUUUCCUCCGACGGCUGGCA	chr9:35689918-35690161(-)$1	243	6	46	19.2358
GAGAUUUGUUgggagagggaaagaggggaagaaaggggcg	chr20:57467327-57467612(+)$1	285	59	99	14.9922
CCACGGGGAGGGCCCUACAUCAUCUGCUACCCUGAAGGAU	chr15:34678935-34679214(-)$1	279	79	119	17.3742
CUCAGUUGCGCCCUCAGGCUGGAGGUGAUGGGUGUAGACG	chr3:49057757-49058043(-)$1	286	69	109	17.0537
CCGCAGCCGCGUGGAAAAUAUGCGGGGCACGUGGGGGGCG	chr9:35690529-35690784(-)$1	255	74	114	22.1349
AAAUGGCACCUCUGGGAUUGGCCUACCUGGGGAUUUCUUG	chr17:57918010-57918252(+)$1	242	118	158	13.6940
AGAGCUGGGUAGGGCUGGUAGCACAGAGGCCCUGCCCAGC	chr19:58991078-58991358(-)$1	280	158	198	20.2098
GAGGCGGACUGCGAGGGAAAGGGGGCCUUGUUGAGUCCGC	chr1:205418847-205419096(-)$1	249	58	98	16.9122
AGAGAGCGAGACUUUUCUAUUUUCCAAAAGCUCGGUCUGA	chr17:28443932-28444225(+)$1	293	188	228	17.1888
UUGCCAGGAGGAGCUACUAUUCUUACUCCUACUACCUGUA	chr6:128327053-128327395(-)$1	342	188	228	19.5004
auguguagaugcaugacuuccucacuaagcugcugcacac	chr12:391395-391697(-)$1	302	62	102	18.1262
UUGUGGGGGAGAAUGAGGAUGAAAACGUGGAGCUUCCAUU	chr19:16187719-16188015(+)$1	296	174	214	17.9732
uacugugugcugggcacugccauccugccuuggguacacu	chr18:20798956-20799213(+)$1	257	157	197	20.1342
GAUUUCUUUAAAAAAAAAAAAACCGUAAAGCCCUGCAUGU	chr11:35286743-35287081(-)$1	338	59	99	14.8912
GAUGUGAGCUUUUAAUUUCUUAUUUAGUUAUUAAGCAUAC	chr7:128388526-128388813(+)$1	287	24	64	11.5157
AAUCCAGGAUAGGCUGUUUCCAUCUGUGAGGCCUAUUCUU	chr12:58217991-58218476(-)$1	485	21	61	21.9029
CUGCCUGCUCUUCCAGUCCAGCCAACACUCUAAGCAGGCA	chr4:38869897-38870142(+)$1	245	133	173	16.5201
UGUGUGCUAGGCUGGGGGGGAGAGAGGGCGAGAGAGAGCG	chr22:41487773-41488046(+)$1	273	22	62	20.8099
AGCUGAUAUCAGUUCUCAUUUUACACACUGGCUCAGUUCA	chr9:97848170-97848413(+)$1	243	147	187	21.8462
GAGAAACUACGGCGACUGUAUCUUUGGCCGAGGAGUUUUA	chr17:28443794-28444129(+)$1	335	123	163	18.9343
UACCGGAGUGUGGGCCGAAGCAGGCGCUGCAGCCGCGGAA	chr7:150066650-150066963(+)$1	313	201	241	11.5465

#DB
(((((((...(.((((.......))).).)...)))))))	chr4:83294795-83295071(-)$1	1	57	97	12.9671
..((((((((((((((.........))))))..)))))))	chr1:205418920-205419162(-)$1	1	124	164	16.9122
.((((((((.....(((.........)))...))))))))	chr4:38870001-38870259(+)$1	1	29	69	16.5201
.(((((...(((((((.........)))))))...)))))	chr3:49058407-49058718(-)$1	1	49	89	16.6176
((((((((((((..............)))))))..)))))	chr19:56652951-56653258(+)$1	1	194	234	19.5859
(...(((((((.((((.......)))).))))))))))))	chr17:46128250-46128543(+)$1	1	39	79	11.0735
.....((((.((.........)).))))....))))))).	chr7:128828630-128828912(+)$1	1	43	83	12.4477
...(((..(((((.((((.........)))).))))).))	chr16:87739054-87739293(-)$1	1	70	110	14.8603
(((..(((((((((((.........))))))))))).)))	chr16:2579691-2579986(+)$1	1	29	69	17.8951
..(((.((((.(((((.........))))))))).)))..	chr17:28444025-28444251(+)$1	1	95	135	17.1888
.(((((.((..(((((.........))))).)))))).).	chr19:48983011-48983316(+)$1	1	120	160	15.9372
((.(..(((((((..............)))))))).))).	chr9:35690584-35690872(-)$1	1	162	202	22.1349
...(((((((.(..(((.......)))..)..))))))).	chr3:195635536-195635820(-)$1	1	180	220	13.4766
..((((((((((((((.........))))))..)))))))	chr1:205418896-205419120(-)$1	1	82	122	16.9122
(((.(((....((.............))....))).))).	chr17:7082307-7082564(-)$1	1	51	91	19.8884
((..((((((((.(...............).)))))))).	chr16:29985280-29985588(+)$1	1	241	281	17.0995
(..(((((.(((((((...........)))))))))))).	chr20:62572796-62573069(-)$1	1	191	231	18.1952
(....((((((((((...........))))))))))))))	chr16:24802021-24802339(+)$1	1	277	317	19.7993
....)))).(((((((.........)))))))(((((((.	chr17:57918052-57918290(+)$1	1	76	116	13.6940
(((((..((((((...........))))))..))))))))	chr10:133770920-133771228(+)$1	1	29	69	18.3890
.((.((((((((((((.........))))))...))))))	chr14:24036469-24036749(-)$1	1	113	153	14.1243
((..(((((((((((((.........)))...))))).))	chr22:46508667-46508962(+)$1	1	217	257	16.8582
(((((.(((((((((...............))))))))).	chr17:57918344-57918564(+)$1	1	71	111	18.3055
((...((((.((((((........).))))).))))....	chr19:46522267-46522513(+)$1	1	27	67	10.9148
((.((((.(((((((............))))))).)))).	chr9:35689918-35690161(-)$1	1	6	46	19.2358
....(((.((..................)).)))...)))	chr20:57467327-57467612(+)$1	1	59	99	14.9922
((.(((((..(((............))).)))))..))))	chr15:34678935-34679214(-)$1	1	79	119	17.3742
((((((((((((((((.........))).))))))).)).	chr3:49057757-49058043(-)$1	1	69	109	17.0537
((.(..(((((((..............)))))))).))).	chr9:35690529-35690784(-)$1	1	74	114	22.1349
....)))).(((((((.........)))))))(((((((.	chr17:57918010-57918252(+)$1	1	118	158	13.6940
..((((((((((((((...........)))))))))))))	chr19:58991078-58991358(-)$1	1	158	198	20.2098
..((((((((((((((.........))))))..)))))))	chr1:205418847-205419096(-)$1	1	58	98	16.9122
..(((.((((.(((((.........))))))))).)))..	chr17:28443932-28444225(+)$1	1	188	228	17.1888
((((.((((((((............)))))....))))))	chr6:128327053-128327395(-)$1	1	188	228	19.5004
.(((((((..((................))..))))))).	chr12:391395-391697(-)$1	1	62	102	18.1262
..(((((((...(((..........)))....))))))).	chr19:16187719-16188015(+)$1	1	174	214	17.9732
....((((((((((((.........)))))..))))))).	chr18:20798956-20799213(+)$1	1	157	197	20.1342
.....(((((...............)))))....))))))	chr11:35286743-35287081(-)$1	1	59	99	14.8912
(..(((.((((.(((((........)))))..)))).)))	chr7:128388526-128388813(+)$1	1	24	64	11.5157
((((.((((((((((..............)))))))))).	chr12:58217991-58218476(-)$1	1	21	61	21.9029
.((((((((.....(((.........)))...))))))))	chr4:38869897-38870142(+)$1	1	133	173	16.5201
(((...((..(((.............)))...))...)))	chr22:41487773-41488046(+)$1	1	22	62	20.8099
((((((..(((((.............))))).))))))))	chr9:97848170-97848413(+)$1	1	147	187	21.8462
..((((((.((((.............))))...)))))).	chr17:28443794-28444129(+)$1	1	123	163	18.9343
(.((((..((((((((......))).)))))..).))).)	chr7:150066650-150066963(+)$1	1	201	241	11.5465

#PSSM
! : 0.20	e : 0.08	d : 0.08	c : 0.08	g : 0.06	[ : 0.06	# : 0.06	i : 0.06	$ : 0.04	b : 0.04	m : 0.04	h : 0.02	" : 0.02	: : 0.02	f : 0.02	& : 0.02	= : 0.02	
! : 0.20	e : 0.11	g : 0.08	# : 0.08	c : 0.06	i : 0.06	h : 0.04	" : 0.04	$ : 0.04	d : 0.04	b : 0.04	m : 0.04	a : 0.02	f : 0.02	& : 0.02	= : 0.02	[ : 0.02	
h : 0.11	g : 0.08	e : 0.08	# : 0.08	c : 0.08	[ : 0.08	! : 0.08	" : 0.06	i : 0.06	d : 0.04	m : 0.04	= : 0.04	$ : 0.02	b : 0.02	& : 0.02	f : 0.02	
e : 0.13	g : 0.11	h : 0.11	c : 0.11	" : 0.06	! : 0.06	# : 0.06	i : 0.06	d : 0.04	a : 0.04	[ : 0.04	m : 0.04	$ : 0.02	= : 0.02	& : 0.02	f : 0.02	
c : 0.15	g : 0.13	h : 0.13	e : 0.13	d : 0.08	! : 0.06	i : 0.04	f : 0.04	" : 0.04	[ : 0.04	$ : 0.02	# : 0.02	b : 0.02	= : 0.02	& : 0.02	
g : 0.15	h : 0.13	d : 0.13	e : 0.11	c : 0.11	= : 0.08	[ : 0.06	! : 0.06	f : 0.04	b : 0.02	" : 0.02	i : 0.02	a : 0.02	
g : 0.22	d : 0.15	h : 0.13	! : 0.08	= : 0.08	e : 0.08	c : 0.06	[ : 0.04	f : 0.04	" : 0.02	i : 0.02	b : 0.02	
g : 0.20	d : 0.15	h : 0.13	= : 0.08	e : 0.08	! : 0.06	f : 0.06	" : 0.04	b : 0.04	[ : 0.04	# : 0.02	i : 0.02	c : 0.02	
g : 0.20	h : 0.13	e : 0.13	d : 0.11	= : 0.08	! : 0.06	" : 0.04	b : 0.04	[ : 0.04	: : 0.04	f : 0.04	# : 0.02	i : 0.02	
g : 0.26	e : 0.13	h : 0.08	= : 0.08	d : 0.08	! : 0.08	" : 0.04	$ : 0.04	[ : 0.04	f : 0.04	# : 0.02	i : 0.02	b : 0.02	
g : 0.24	e : 0.13	f : 0.11	= : 0.08	[ : 0.06	$ : 0.04	b : 0.04	c : 0.04	d : 0.04	a : 0.02	! : 0.02	# : 0.02	h : 0.02	i : 0.02	^ : 0.02	" : 0.02	x : 0.02	
e : 0.22	g : 0.20	f : 0.11	= : 0.08	[ : 0.06	b : 0.06	$ : 0.04	c : 0.04	a : 0.02	h : 0.02	i : 0.02	^ : 0.02	" : 0.02	x : 0.02	d : 0.02	
e : 0.24	g : 0.17	f : 0.11	= : 0.08	c : 0.06	$ : 0.04	d : 0.04	a : 0.02	w : 0.02	r : 0.02	! : 0.02	b : 0.02	[ : 0.02	i : 0.02	^ : 0.02	y : 0.02	x : 0.02	
e : 0.15	g : 0.11	c : 0.08	f : 0.08	= : 0.08	v : 0.08	w : 0.06	$ : 0.04	u : 0.04	d : 0.02	r : 0.02	[ : 0.02	! : 0.02	a : 0.02	t : 0.02	i : 0.02	^ : 0.02	y : 0.02	x : 0.02	
c : 0.17	e : 0.13	g : 0.11	f : 0.08	= : 0.08	v : 0.08	w : 0.06	d : 0.04	x : 0.04	u : 0.04	r : 0.02	t : 0.02	i : 0.02	^ : 0.02	y : 0.02	
c : 0.15	e : 0.11	f : 0.08	g : 0.08	w : 0.08	v : 0.08	x : 0.06	u : 0.06	d : 0.04	= : 0.04	t : 0.04	r : 0.02	a : 0.02	^ : 0.02	y : 0.02	s : 0.02	
r : 0.31	c : 0.08	w : 0.08	v : 0.08	t : 0.08	x : 0.06	u : 0.06	p : 0.04	d : 0.02	q : 0.02	^ : 0.02	y : 0.02	s : 0.02	e : 0.02	o : 0.02	
r : 0.37	w : 0.08	v : 0.08	t : 0.08	p : 0.06	x : 0.06	u : 0.06	q : 0.04	d : 0.02	^ : 0.02	y : 0.02	s : 0.02	o : 0.02	
r : 0.39	w : 0.08	v : 0.08	t : 0.08	p : 0.06	x : 0.06	u : 0.06	q : 0.04	^ : 0.02	y : 0.02	s : 0.02	o : 0.02	
r : 0.39	w : 0.08	v : 0.08	t : 0.08	p : 0.06	x : 0.06	u : 0.06	q : 0.04	^ : 0.02	y : 0.02	s : 0.02	o : 0.02	
r : 0.39	w : 0.08	v : 0.08	t : 0.08	p : 0.06	x : 0.06	u : 0.06	q : 0.04	^ : 0.02	y : 0.02	s : 0.02	o : 0.02	
r : 0.37	w : 0.08	v : 0.08	t : 0.08	p : 0.06	x : 0.06	u : 0.06	q : 0.04	b : 0.02	^ : 0.02	y : 0.02	s : 0.02	o : 0.02	
r : 0.37	w : 0.08	v : 0.08	t : 0.08	p : 0.06	x : 0.06	u : 0.06	q : 0.04	b : 0.02	^ : 0.02	y : 0.02	s : 0.02	c : 0.02	
r : 0.37	w : 0.08	v : 0.08	t : 0.08	x : 0.06	u : 0.06	c : 0.04	q : 0.04	d : 0.02	] : 0.02	p : 0.02	^ : 0.02	y : 0.02	s : 0.02	
r : 0.37	w : 0.08	v : 0.08	c : 0.06	x : 0.06	t : 0.06	u : 0.06	d : 0.04	f : 0.02	a : 0.02	^ : 0.02	y : 0.02	s : 0.02	q : 0.02	
e : 0.15	c : 0.11	f : 0.11	r : 0.08	w : 0.08	v : 0.08	g : 0.06	t : 0.06	d : 0.04	x : 0.04	] : 0.04	= : 0.02	u : 0.02	^ : 0.02	y : 0.02	
e : 0.22	c : 0.17	f : 0.11	g : 0.08	d : 0.06	w : 0.06	= : 0.04	x : 0.04	t : 0.04	] : 0.02	r : 0.02	b : 0.02	u : 0.02	^ : 0.02	y : 0.02	
e : 0.22	g : 0.17	c : 0.15	f : 0.11	d : 0.06	= : 0.06	x : 0.04	a : 0.02	] : 0.02	2 : 0.02	b : 0.02	^ : 0.02	y : 0.02	w : 0.02	
e : 0.22	g : 0.20	f : 0.11	c : 0.08	] : 0.06	4 : 0.06	= : 0.06	d : 0.04	x : 0.04	b : 0.04	2 : 0.02	w : 0.02	
e : 0.24	g : 0.22	f : 0.11	3 : 0.08	= : 0.08	a : 0.06	4 : 0.06	d : 0.04	b : 0.04	x : 0.02	
g : 0.22	3 : 0.13	4 : 0.11	2 : 0.11	f : 0.08	= : 0.08	e : 0.08	d : 0.06	] : 0.06	i : 0.02	
g : 0.22	2 : 0.20	3 : 0.15	4 : 0.11	= : 0.08	] : 0.06	d : 0.04	b : 0.02	h : 0.02	i : 0.02	c : 0.02	e : 0.02	
g : 0.31	3 : 0.08	2 : 0.08	= : 0.08	d : 0.08	h : 0.06	e : 0.06	i : 0.06	b : 0.04	c : 0.04	4 : 0.04	
g : 0.31	h : 0.13	d : 0.11	= : 0.08	e : 0.06	i : 0.06	3 : 0.04	c : 0.04	4 : 0.04	2 : 0.02	b : 0.02	f : 0.02	a : 0.02	
g : 0.22	h : 0.13	= : 0.11	] : 0.08	3 : 0.06	e : 0.06	d : 0.06	i : 0.06	2 : 0.04	a : 0.04	c : 0.04	f : 0.04	
g : 0.20	h : 0.15	e : 0.11	= : 0.11	c : 0.08	d : 0.08	] : 0.06	i : 0.06	f : 0.04	3 : 0.04	2 : 0.02	
g : 0.17	h : 0.15	c : 0.15	e : 0.11	d : 0.08	] : 0.06	i : 0.06	= : 0.06	f : 0.04	3 : 0.04	4 : 0.02	
g : 0.20	c : 0.17	h : 0.15	d : 0.08	= : 0.08	e : 0.06	] : 0.06	i : 0.06	f : 0.04	4 : 0.02	b : 0.02	
g : 0.20	h : 0.15	c : 0.13	e : 0.08	d : 0.08	= : 0.08	i : 0.06	3 : 0.04	f : 0.04	a : 0.02	4 : 0.02	b : 0.02	] : 0.02	
] : 0.22	h : 0.13	c : 0.08	2 : 0.08	e : 0.06	4 : 0.06	d : 0.06	= : 0.06	g : 0.04	3 : 0.04	! : 0.04	i : 0.04	f : 0.02	

#score	764.2958618137179
#seq	45
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485NXM_DHX30_UTR_m1_run1.txt

#BEAR
####ggggggg"""bbmmmmbb]ggggggg4444ggggg	chr1:228675175-228675445(+)$1	270	21	60	14.1841
!!ccc[a[bb!!ddddmmmmdddd22bb333a]ccc22d	chr9:79009073-79009363(-)$1	290	231	270	12.9854
ffffff[ddddcccbbmmmmbb333ccc]dddd]fffff	chr5:154136582-154136839(+)$1	257	1	40	10.9636
dddd[ddddccc[cccmmmmccc22ccc22dddddddd]	chr2:10588220-10588472(-)$1	252	175	214	11.4882
iiiiiiiicccrrrrrrrrrccc22iiiiiiiii4444e	chr11:70116720-70117070(+)$1	350	279	318	12.2754
ddhhhhhhhh"""ccclllccc333hhhhhhhh333ddd	chr7:156931672-156931985(+)$1	313	198	237	12.4865
iiiiiiiaa[ffffffmmmmffffff]a]a]iiiiiiii	chr17:40351542-40351835(-)$1	293	185	224	12.6322
:ccc[============mmmm============]ccc::	chr16:89980254-89980515(+)$1	261	217	256	12.2778
ggggggg%%%%%%cccmmmmccc4444gggggggdddd[	chr17:40351641-40351880(-)$1	239	133	172	11.7906
!!gggggggccc[annnnna]ccc]ggggggg22ccc22	chr5:154135174-154135469(+)$1	295	39	78	12.5579
cc[ggggggg"""cccmmmmccc333ggggggg]ccc]d	chrX:20284774-20285016(-)$1	242	163	202	17.7206
""gggggggeeeeebbmmmmbb]eeeee]ggggggg===	chr17:80477550-80477817(+)$1	267	18	57	12.5711
dddd[===========mmmm===========dddd4444	chrX:55207990-55208247(-)$1	257	187	226	14.5396
EEEiiiiiiiiiddddmmmmdddd333iiiiiiiiiddd	chr1:27022570-27022816(+)$1	246	7	46	12.1151
cc!!ffffff!!ddddmmmmdddd]ffffff22ccc444	chr16:2043101-2043399(+)$1	298	154	193	12.6347
ddd[ggggggg!!bboooooobb]ggggggg]dddd22d	chr17:38153988-38154257(+)$1	269	171	210	12.8047
[eeeee!!a[a[ddddmmmmddddaa22eeeee22gggg	chr6:166755806-166756080(-)$1	274	154	193	11.9663
ee[ffffff[a[ddddmmmmdddd]a]ffffff]eeeee	chr19:2270195-2270431(+)$1	236	113	152	12.3613
dd!!ccc[gggggggrrrrrrrrrggggggg333ccc22	chr19:50985390-50985643(+)$1	253	32	71	11.2032
ca[ffffffa[cccbbmmmmbb]ccc]a]ffffff]a]c	chr17:7477031-7477316(+)$1	285	168	207	12.2354
bb[cccccc[bb[cccmmmmccc]bbccc]cccbb]ddd	chr20:34252567-34252897(-)$1	330	132	171	12.2725
b[ggggggg####ccclllccc4444ggggggg]bbccc	chr12:49666592-49666876(+)$1	284	184	223	15.2086
!a!!ggggggg!!cccmmmmcccggggggg22a22bb]e	chr19:16187748-16187998(+)$1	250	205	244	15.1877
=========gggggggnnnnnggggggg333========	chr16:89367078-89367334(-)$1	256	159	198	13.5210
:==========!!bboooooobb4444==========a!	chr3:33481515-33481766(-)$1	251	0	39	14.9230
dd[ggggggg[ddddnnnnndddd333gggggggdddd]	chr9:116822419-116822650(-)$1	231	132	171	12.6405
!!iiiiiiiii!!cccmmmmccc]iiiiiiiii22cccc	chr12:123756066-123756314(-)$1	248	53	92	16.9082
eeee$$$$$ccc[cccmmmmccc]ccc333eeeeebb33	chr20:62331382-62331632(-)$1	250	67	106	12.2029
[bb[a[eeeee!!a[ammmma]a22eeeee]a]bb]a]b	chr9:139743356-139743618(+)$1	262	16	55	12.0329
=####==========qqqqqqqq==========4444==	chr16:89980748-89981028(+)$1	280	140	179	11.6440
=====[bbccc[bb[ammmma]bb]ccc]bb22======	chr12:132402733-132403010(+)$1	277	75	114	12.9058
[bb[eeeee[bb[bboooooobb333bb]eeeeebb]ag	chr7:933229-933500(+)$1	271	203	242	11.1092
!iiiiiiiii!!bboooooobb55555iiiiiiiiiccc	chr17:75211498-75211788(+)$1	290	113	152	11.0336
ffggggggg[a[cccnnnnnccc]a]ggggggg333fff	chr1:231557523-231557809(-)$1	286	162	201	13.9894
e!!eeeee"""a[cccmmmmccc]a333eeeeeeeeee:	chr22:19711744-19712005(+)$1	261	189	228	13.0397
gggggg!!bb[ddddoooooodddd]bb22ggggggg]d	chr1:32403758-32404012(-)$1	254	103	142	11.7547
cc[a[dddd####cccnnnnnccc]dddd]a]ccc]iii	chr19:2425561-2425807(-)$1	246	91	130	11.7482
[ggggggg[eeeeennnnneeeee22ggggggg]a4444	chr6:168227628-168227905(+)$1	277	84	123	11.0339
ee[iiiiiiiii[cccqqqqqqqqccc]iiiiiiiii]e	chr5:179247988-179248234(+)$1	246	15	54	10.7680
=========####ccc[aannnnna]a]ccc]=======	chrX:153686584-153686856(+)$1	272	155	194	11.4511
iiiiiiii$$$$$cccooooooccciiiiiiiiiccc[c	chr7:142375235-142375492(+)$1	257	142	181	14.1801
ggggg!!a[bb[bbmmmmbb]bba22ggggggg]ccc]d	chrX:152953467-152953738(+)$1	271	203	242	10.8654
###ccc[bb!!ddddoooooodddd22bbccc4444===	chr19:4038174-4038426(+)$1	252	71	110	11.8828
bb!!bb[ggggggg[ammmma]ggggggg]bb22bb:cc	chr3:133465149-133465428(+)$1	279	85	124	11.0814
!!ccc[a[ccca[cccmmmmccc]a]ccc]a4444ccc2	chr6:170893553-170893810(-)$1	257	12	51	15.0623
cbb[ffffffbb[cccmmmmccc]bb]ffffff]bb]cc	chr1:2126017-2126311(-)$1	294	97	136	11.8703
""gggggggccc[bbmmmmbb]ccc22ggggggg]bb]c	chr19:14552003-14552274(+)$1	271	102	141	12.8261
d!!iiiiiiiii[cccooooooccciiiiiiiii4444d	chr15:91445894-91446143(+)$1	249	32	71	15.5368
iiiiiiii[a"""ccclllcccaiiiiiiiii4444eee	chr19:3062107-3062360(-)$1	253	68	107	15.3617
gggg!!bb[cccddddmmmmdddd]ccc]bb333ggggg	chr12:123997897-123998166(-)$1	269	94	133	12.9123
)))ccceeeee!!cccmmmmccc333eeeee]ccc====	chr5:154135053-154135313(+)$1	260	19	58	13.0805
eeeee[==========mmmm==========22eeeeeee	chr17:76122843-76123088(-)$1	245	79	118	13.8044
ccccc!!ccc[ddddmmmmdddd22ccc22ccc]ccc]d	chr4:122744714-122744974(-)$1	260	130	169	12.0516
ee[ffffff[a[ddddmmmmdddd]a]ffffff]eeeee	chr19:2270267-2270511(+)$1	244	41	80	12.3613
eeee!!ccc####cccmmmmccc4444ccc]eeeee]bb	chr11:10529723-10529946(-)$1	223	80	119	13.9270
iiiiiiiii[ccc[bbmmmmbbccciiiiiiiii::ddd	chr19:1434713-1434941(+)$1	228	93	132	12.6560

#otherMatches

#Seq PSSM
UCCCUGCGGGCCCCGCCGAGGCCGCCUGCGCCCUGUGCC	chr1:228675175-228675445(+)$1	270	21	60	14.1841
GACGCGCAGACCGGGCCGCAGCCCAUUCCCCGAGCGGAC	chr9:79009073-79009363(-)$1	290	231	270	12.9854
ccgcgggccgcucggccucggcguucggugcgggccgcg	chr5:154136582-154136839(+)$1	257	1	40	10.9636
GGCGUCUGCGCUUCCCCAUGGGGCUGGCCUGCGGCGCCU	chr2:10588220-10588472(-)$1	252	175	214	11.4882
CCGCUCCCGCCGGCGAGCAAGGUAAGGGAGCGGGACACU	chr11:70116720-70117070(+)$1	350	279	318	12.2754
gcgggcgggcgccgagagccucccagcccgccccgugcc	chr7:156931672-156931985(+)$1	313	198	237	12.4865
GAGAGUGGAGAUUUUUGAUGAAAGGUGUGCUCGCUCUCU	chr17:40351542-40351835(-)$1	293	185	224	12.6322
aacgugugugcgcacguauguauguguguacauuuguau	chr16:89980254-89980515(+)$1	261	217	256	12.2778
GGGGAGGAAGAGAGCUGAUGAGUGUGGCUUCCCUGAGCU	chr17:40351641-40351880(-)$1	239	133	172	11.7906
CCAGCGCCCCGGAGGAAGGCGUCGCGGGCGCUCUGCUAG	chr5:154135174-154135469(+)$1	295	39	78	12.5579
cgccgccgccgcugccgUGGGGCUCgggcggcgacggag	chrX:20284774-20285016(-)$1	242	163	202	17.7206
ccggcgugccggcucgguggcgcggccgcgcgugcuccc	chr17:80477550-80477817(+)$1	267	18	57	12.5711
GGACAUCCUAAUGGUGUCACCGCUAUUAGGGGUUCGUUU	chrX:55207990-55208247(-)$1	257	187	226	14.5396
CCCCUCAUUCCCAGGCAAGGGCUUGGGGGGAAUGAGCCG	chr1:27022570-27022816(+)$1	246	7	46	12.1151
AGUCCCUCAGCACCUGGCCCCAGGACUGAGGUCCUGAGA	chr16:2043101-2043399(+)$1	298	154	193	12.6347
GUUUUUUGAAGCUUCGAUUAUGAUUUUUAAACAAUAAAA	chr17:38153988-38154257(+)$1	269	171	210	12.8047
AGCAGGGCCUGACUGCGCAGGUAGCGAACUUGCGCCCUC	chr6:166755806-166756080(-)$1	274	154	193	11.9663
GUCGAGCGUGCGCUGCGGGAGCGGGGAGCGCUUUGCGGU	chr19:2270195-2270431(+)$1	236	113	152	12.3613
CGUCGUCCUGUUCCUCAUGAUGUCAGGAGCGCCAGACAC	chr19:50985390-50985643(+)$1	253	32	71	11.2032
GGGACUUCCAGCGCGCUGGUGCUGCGGUGGGAGGUGCAC	chr17:7477031-7477316(+)$1	285	168	207	12.2354
GCUGGGGCUGUCGGCCGCGGGGCGGAGGCACUCGCGCGG	chr20:34252567-34252897(-)$1	330	132	171	12.2725
AGAGCUGUGUGCAUGCUGAGCAAUACCACAGCUGUUGCC	chr12:49666592-49666876(+)$1	284	184	223	15.2086
ACAGGGAUUUCGACGGGGGACCGGGGAUCUGGGGAGGGG	chr19:16187748-16187998(+)$1	250	205	244	15.1877
GCCAGGCACAUGCUGGUUCCUUCAGCGUUAGGUGCUUGG	chr16:89367078-89367334(-)$1	256	159	198	13.5210
UGGGGGCGGGUGACGGGCGGGCGGAGGGCUUGCCCCCGU	chr3:33481515-33481766(-)$1	251	0	39	14.9230
CAACUGGCCGGUCUGCAAGUCAGAGGAUGGCCAGUGUCU	chr9:116822419-116822650(-)$1	231	132	171	12.6405
gcgcGGGGCUGCAGcgcuaccgcccggccucgccgccgc	chr12:123756066-123756314(-)$1	248	53	92	16.9082
CCUUUCCACAGGGCGCAGCGGCGGCCUUUCGAGGCCCUU	chr20:62331382-62331632(-)$1	250	67	106	12.2029
GCGGUGGAGGGGGUGGAGAGCGAGGCCUUCGGGCGGUGG	chr9:139743356-139743618(+)$1	262	16	55	12.0329
UUugugugugcgccugugugugggggugcacauuugugu	chr16:89980748-89981028(+)$1	280	140	179	11.6440
GCCCUUGGCCUGAGGUGGGGAGCUGGGGACUUGGGGGUU	chr12:132402733-132403010(+)$1	277	75	114	12.9058
GGGACCCCAUGUACAACGAGGUGAGAGCUUGGGGCUGGG	chr7:933229-933500(+)$1	271	203	242	11.1092
UCAGGAGGGCGGGGGAGGGACCGAGCAGCCCUCUUGCCC	chr17:75211498-75211788(+)$1	290	113	152	11.0336
cgccgccgccgccAUGGCCAAUGACAGCGGCGGGCCCGG	chr1:231557523-231557809(-)$1	286	162	201	13.9894
cUGUCGCUGACCGACCCGCUGGUGGCCGAGCGAGCCGGA	chr22:19711744-19712005(+)$1	261	189	228	13.0397
GUCCGGGAGCGGCUGGAGCGGCAGCGGCGGCCGGGCACG	chr1:32403758-32404012(-)$1	254	103	142	11.7547
CUCUGCCUGCUCUGCCGCCGAGGCCCGGGGAUGGGAUGC	chr19:2425561-2425807(-)$1	246	91	130	11.7482
ggcgggggGUGGCGAGGGGCGCCGGGCCCCCGCGGACCU	chr6:168227628-168227905(+)$1	277	84	123	11.0339
UCAGCUUCUGCUGCAGCCCCGAGCCUGAGGCGGAAGCCG	chr5:179247988-179248234(+)$1	246	15	54	10.7680
GCGGCCACCCGGAGCCAGCGGAGGGACAGGUAGGUGGCC	chrX:153686584-153686856(+)$1	272	155	194	11.4511
AUCCUAUUCUAGAGUCCAUAUUGACAAUAGGGUUUACGA	chr7:142375235-142375492(+)$1	257	142	181	14.1801
GGGCGAGGAGCCGCCGCAGCCGCCGCCGCCCGAGCCGCG	chrX:152953467-152953738(+)$1	271	203	242	10.8654
CUGCCCACGACCAUUCCAGCCAGUGCGCGGGGACCCGGG	chr19:4038174-4038426(+)$1	252	71	110	11.8828
GCACAGAAGCGAGUCCGACUGUGCUCGCUGCUCAGCGCC	chr3:133465149-133465428(+)$1	279	85	124	11.0814
GCUCCCGUCAGACGCGUUUCCGCCUCCUGUCCUCCGGAA	chr6:170893553-170893810(-)$1	257	12	51	15.0623
CUCACUUCCGCCCGGCGCGGGCUUGGAUGGAGGCGGCGC	chr1:2126017-2126311(-)$1	294	97	136	11.8703
ACCUGCGGCGGGCCACCACUGACCUGGGCCGCAGCCUGG	chr19:14552003-14552274(+)$1	271	102	141	12.8261
ggccggggcgggcggcgcggcUGUCCCCGCCCCGCACGC	chr15:91445894-91446143(+)$1	249	32	71	15.5368
GCGCCGGGACAAAggcgcggccgcccggcgcccccagca	chr19:3062107-3062360(-)$1	253	68	107	15.3617
GAGUCAGGCGCCAGGCUUCUGCCUCGGUCUCAUAGCUCC	chr12:123997897-123998166(-)$1	269	94	133	12.9123
CUAGGAGGCCUGGACUGCAGAGUGGGGGGCCUUCCUCCC	chr5:154135053-154135313(+)$1	260	19	58	13.0805
CUCUGUGCCCCUGUCUCAUCAGAUGGGGGCUCCGGAGGU	chr17:76122843-76123088(-)$1	245	79	118	13.8044
GGCAGAGUGCACGCUGCUUGGCGCCGCAGGCUGAUCCCG	chr4:122744714-122744974(-)$1	260	130	169	12.0516
GUCGAGCGUGCGCUGCGGGAGCGGGGAGCGCUUUGCGGU	chr19:2270267-2270511(+)$1	244	41	80	12.3613
CCGCCUGCCCAGUGACAUGCGUUUaacggccgcgguacc	chr11:10529723-10529946(-)$1	223	80	119	13.9270
GGGGGUCCCUCCGUGCCAGGGUcggggggcccccccgcc	chr19:1434713-1434941(+)$1	228	93	132	12.6560

#DB
....(((((((...((....)).)))))))....)))))	chr1:228675175-228675445(+)$1	1	21	60	14.1841
..(((.(.((..((((....))))..))...).)))..)	chr9:79009073-79009363(-)$1	1	231	270	12.9854
((((((.(((((((((....))...))).)))).)))))	chr5:154136582-154136839(+)$1	1	1	40	10.9636
((((.(((((((.(((....)))..)))..)))))))).	chr2:10588220-10588472(-)$1	1	175	214	11.4882
(((((((((((.........)))..)))))))))....)	chr11:70116720-70117070(+)$1	1	279	318	12.2754
((((((((((...(((...)))...))))))))...)))	chr7:156931672-156931985(+)$1	1	198	237	12.4865
(((((((((.((((((....)))))).).).))))))))	chr17:40351542-40351835(-)$1	1	185	224	12.6322
.(((.((((((((((((....)))))))))))).)))..	chr16:89980254-89980515(+)$1	1	217	256	12.2778
(((((((......(((....)))....)))))))((((.	chr17:40351641-40351880(-)$1	1	133	172	11.7906
..((((((((((.(.....).))).)))))))..)))..	chr5:154135174-154135469(+)$1	1	39	78	12.5579
((.(((((((...(((....)))...))))))).))).)	chrX:20284774-20285016(-)$1	1	163	202	17.7206
..((((((((((((((....)).))))).))))))))))	chr17:80477550-80477817(+)$1	1	18	57	12.5711
((((.(((((((((((....)))))))))))))))....	chrX:55207990-55208247(-)$1	1	187	226	14.5396
((((((((((((((((....))))...)))))))))(((	chr1:27022570-27022816(+)$1	1	7	46	12.1151
((..((((((..((((....)))).))))))..)))...	chr16:2043101-2043399(+)$1	1	154	193	12.6347
(((.(((((((..((......)).))))))).))))..)	chr17:38153988-38154257(+)$1	1	171	210	12.8047
.(((((..(.(.((((....))))))..)))))..))))	chr6:166755806-166756080(-)$1	1	154	193	11.9663
((.((((((.(.((((....)))).).)))))).)))))	chr19:2270195-2270431(+)$1	1	113	152	12.3613
((..(((.(((((((.........)))))))...)))..	chr19:50985390-50985643(+)$1	1	32	71	11.2032
((.(((((((.(((((....)).))).).)))))).).)	chr17:7477031-7477316(+)$1	1	168	207	12.2354
((.((((((.((.(((....))).))))).))))).)))	chr20:34252567-34252897(-)$1	1	132	171	12.2725
(.(((((((....(((...)))....))))))).)))))	chr12:49666592-49666876(+)$1	1	184	223	15.2086
.(..(((((((..(((....))))))))))..)..)).)	chr19:16187748-16187998(+)$1	1	205	244	15.1877
((((((((((((((((.....)))))))...))))))))	chr16:89367078-89367334(-)$1	1	159	198	13.5210
.((((((((((..((......))....))))))))))(.	chr3:33481515-33481766(-)$1	1	0	39	14.9230
((.(((((((.((((.....))))...))))))))))).	chr9:116822419-116822650(-)$1	1	132	171	12.6405
..(((((((((..(((....))).)))))))))..))))	chr12:123756066-123756314(-)$1	1	53	92	16.9082
((((.....(((.(((....))).)))...)))))))..	chr20:62331382-62331632(-)$1	1	67	106	12.2029
.((.(.(((((..(.(....).)..))))).).)).).)	chr9:139743356-139743618(+)$1	1	16	55	12.0329
(....((((((((((........))))))))))....))	chr16:89980748-89981028(+)$1	1	140	179	11.6440
(((((.(((((.((.(....).)).))).))..))))))	chr12:132402733-132403010(+)$1	1	75	114	12.9058
.((.(((((.((.((......))...)).))))))).))	chr7:933229-933500(+)$1	1	203	242	11.1092
.(((((((((..((......)).....))))))))))))	chr17:75211498-75211788(+)$1	1	113	152	11.0336
(((((((((.(.(((.....))).).)))))))...)))	chr1:231557523-231557809(-)$1	1	162	201	13.9894
(..(((((...(.(((....))).)...)))))))))).	chr22:19711744-19712005(+)$1	1	189	228	13.0397
((((((..((.((((......)))).))..))))))).)	chr1:32403758-32404012(-)$1	1	103	142	11.7547
((.(.((((....(((.....))).)))).).))).)))	chr19:2425561-2425807(-)$1	1	91	130	11.7482
.(((((((.(((((.....)))))..))))))).)....	chr6:168227628-168227905(+)$1	1	84	123	11.0339
((.(((((((((.(((........))).))))))))).)	chr5:179247988-179248234(+)$1	1	15	54	10.7680
(((((((((....(((.((.....).).))).)))))))	chrX:153686584-153686856(+)$1	1	155	194	11.4511
((((((((.....(((......))))))))))))(((.(	chr7:142375235-142375492(+)$1	1	142	181	14.1801
(((((..(.((.((....)).)))..))))))).))).)	chrX:152953467-152953738(+)$1	1	203	242	10.8654
...(((.((..((((......))))..)))))....)))	chr19:4038174-4038426(+)$1	1	71	110	11.8828
((..((.(((((((.(....).))))))).))..)).((	chr3:133465149-133465428(+)$1	1	85	124	11.0814
..(((.(.((((.(((....))).).))).)....))).	chr6:170893553-170893810(-)$1	1	12	51	15.0623
(((.((((((((.(((....))).)).)))))).)).))	chr1:2126017-2126311(-)$1	1	97	136	11.8703
..((((((((((.((....)).)))..))))))).)).)	chr19:14552003-14552274(+)$1	1	102	141	12.8261
(..(((((((((.(((......))))))))))))....)	chr15:91445894-91446143(+)$1	1	32	71	15.5368
((((((((.(...(((...)))))))))))))....)))	chr19:3062107-3062360(-)$1	1	68	107	15.3617
((((..((.(((((((....)))).))).))...)))))	chr12:123997897-123998166(-)$1	1	94	133	12.9123
...((((((((..(((....)))...))))).)))))))	chr5:154135053-154135313(+)$1	1	19	58	13.0805
(((((.((((((((((....))))))))))..)))))((	chr17:76122843-76123088(-)$1	1	79	118	13.8044
(((((..(((.((((....))))..)))..))).))).)	chr4:122744714-122744974(-)$1	1	130	169	12.0516
((.((((((.(.((((....)))).).)))))).)))))	chr19:2270267-2270511(+)$1	1	41	80	12.3613
((((..(((....(((....)))....))).))))).))	chr11:10529723-10529946(-)$1	1	80	119	13.9270
(((((((((.(((.((....))))))))))))))..(((	chr19:1434713-1434941(+)$1	1	93	132	12.6560

#PSSM
d : 0.12	e : 0.12	! : 0.10	c : 0.10	i : 0.08	g : 0.07	[ : 0.07	= : 0.07	b : 0.05	# : 0.03	f : 0.03	: : 0.03	" : 0.03	E : 0.01	) : 0.01	
e : 0.12	! : 0.10	d : 0.10	i : 0.10	c : 0.08	g : 0.08	b : 0.08	= : 0.07	# : 0.05	f : 0.03	" : 0.03	a : 0.03	E : 0.01	[ : 0.01	) : 0.01	
g : 0.17	[ : 0.14	i : 0.12	! : 0.10	c : 0.07	e : 0.07	= : 0.07	# : 0.05	d : 0.05	b : 0.05	f : 0.01	h : 0.01	E : 0.01	) : 0.01	
g : 0.21	i : 0.17	c : 0.12	e : 0.08	f : 0.07	! : 0.07	[ : 0.07	= : 0.07	# : 0.03	d : 0.03	h : 0.01	a : 0.01	
g : 0.24	i : 0.17	c : 0.12	f : 0.10	[ : 0.07	e : 0.07	= : 0.07	! : 0.03	h : 0.01	$ : 0.01	a : 0.01	# : 0.01	b : 0.01	
g : 0.23	i : 0.17	f : 0.10	= : 0.10	[ : 0.08	c : 0.07	! : 0.07	e : 0.05	d : 0.03	h : 0.01	$ : 0.01	b : 0.01	
g : 0.21	i : 0.17	= : 0.12	f : 0.08	! : 0.07	e : 0.07	[ : 0.05	c : 0.05	a : 0.03	d : 0.03	b : 0.03	h : 0.01	$ : 0.01	
g : 0.21	i : 0.16	= : 0.12	f : 0.08	e : 0.07	[ : 0.05	d : 0.05	c : 0.05	b : 0.05	a : 0.03	! : 0.03	h : 0.01	% : 0.01	$ : 0.01	
g : 0.21	= : 0.12	c : 0.10	i : 0.10	f : 0.08	[ : 0.07	b : 0.05	d : 0.05	e : 0.05	a : 0.03	$ : 0.03	h : 0.01	% : 0.01	" : 0.01	
c : 0.16	g : 0.14	[ : 0.14	= : 0.08	i : 0.08	e : 0.07	# : 0.07	b : 0.05	f : 0.03	a : 0.03	d : 0.01	h : 0.01	% : 0.01	" : 0.01	$ : 0.01	! : 0.01	
c : 0.16	g : 0.10	= : 0.08	! : 0.07	" : 0.07	e : 0.07	i : 0.07	a : 0.07	[ : 0.07	b : 0.07	# : 0.07	d : 0.01	f : 0.01	% : 0.01	$ : 0.01	
! : 0.16	c : 0.14	[ : 0.10	" : 0.07	= : 0.07	# : 0.07	d : 0.07	i : 0.05	g : 0.05	b : 0.05	e : 0.03	a : 0.03	r : 0.01	f : 0.01	% : 0.01	$ : 0.01	
d : 0.19	[ : 0.19	! : 0.10	" : 0.07	c : 0.07	= : 0.07	# : 0.07	g : 0.05	b : 0.05	e : 0.03	r : 0.01	f : 0.01	% : 0.01	$ : 0.01	
c : 0.41	d : 0.19	b : 0.12	= : 0.07	g : 0.05	a : 0.03	e : 0.03	" : 0.01	r : 0.01	f : 0.01	[ : 0.01	
c : 0.37	d : 0.19	b : 0.16	= : 0.07	[ : 0.05	n : 0.03	g : 0.03	r : 0.01	f : 0.01	o : 0.01	m : 0.01	
c : 0.35	d : 0.12	o : 0.10	b : 0.08	n : 0.07	= : 0.05	a : 0.05	m : 0.05	r : 0.03	f : 0.01	g : 0.01	q : 0.01	
m : 0.58	o : 0.14	n : 0.10	l : 0.05	r : 0.03	q : 0.03	= : 0.01	[ : 0.01	
m : 0.60	o : 0.14	n : 0.10	l : 0.05	r : 0.03	q : 0.03	a : 0.01	
m : 0.58	o : 0.14	n : 0.10	l : 0.05	r : 0.03	q : 0.03	a : 0.01	b : 0.01	
m : 0.55	o : 0.14	n : 0.08	c : 0.05	r : 0.03	q : 0.03	b : 0.03	a : 0.01	e : 0.01	d : 0.01	
c : 0.30	d : 0.16	b : 0.12	o : 0.12	n : 0.05	a : 0.05	] : 0.03	= : 0.03	q : 0.03	f : 0.01	m : 0.01	r : 0.01	e : 0.01	
c : 0.33	d : 0.19	b : 0.17	] : 0.07	= : 0.05	q : 0.03	o : 0.03	f : 0.01	r : 0.01	g : 0.01	e : 0.01	n : 0.01	
c : 0.35	d : 0.19	b : 0.08	] : 0.05	= : 0.05	3 : 0.03	g : 0.03	a : 0.03	q : 0.03	f : 0.01	r : 0.01	4 : 0.01	5 : 0.01	e : 0.01	n : 0.01	
d : 0.17	] : 0.14	c : 0.12	3 : 0.08	g : 0.07	2 : 0.07	= : 0.07	4 : 0.07	e : 0.03	f : 0.01	r : 0.01	b : 0.01	5 : 0.01	q : 0.01	n : 0.01	a : 0.01	i : 0.01	
2 : 0.12	3 : 0.12	] : 0.12	c : 0.12	g : 0.10	a : 0.08	= : 0.07	4 : 0.07	b : 0.03	i : 0.03	d : 0.03	f : 0.01	e : 0.01	5 : 0.01	
c : 0.14	g : 0.12	i : 0.10	3 : 0.10	2 : 0.08	= : 0.07	4 : 0.07	] : 0.07	a : 0.05	f : 0.03	e : 0.03	b : 0.03	h : 0.01	5 : 0.01	d : 0.01	
g : 0.21	c : 0.16	i : 0.10	] : 0.08	= : 0.07	b : 0.05	4 : 0.05	e : 0.05	3 : 0.05	2 : 0.05	h : 0.01	f : 0.01	5 : 0.01	d : 0.01	a : 0.01	
g : 0.26	c : 0.14	i : 0.14	= : 0.08	b : 0.07	f : 0.07	e : 0.05	a : 0.03	3 : 0.03	] : 0.03	h : 0.01	2 : 0.01	d : 0.01	
g : 0.24	i : 0.16	] : 0.12	= : 0.08	f : 0.07	e : 0.07	c : 0.07	3 : 0.05	2 : 0.05	h : 0.01	d : 0.01	b : 0.01	
g : 0.24	i : 0.16	= : 0.08	f : 0.08	e : 0.08	] : 0.07	3 : 0.05	2 : 0.05	c : 0.05	b : 0.03	d : 0.01	h : 0.01	a : 0.01	
g : 0.23	i : 0.16	f : 0.08	e : 0.08	= : 0.07	c : 0.07	] : 0.05	b : 0.05	3 : 0.03	d : 0.03	2 : 0.03	a : 0.03	4 : 0.01	h : 0.01	
g : 0.19	i : 0.17	e : 0.08	= : 0.07	2 : 0.07	] : 0.07	f : 0.07	d : 0.05	c : 0.05	4 : 0.03	a : 0.03	3 : 0.03	h : 0.01	b : 0.01	
g : 0.17	i : 0.16	e : 0.10	= : 0.08	4 : 0.07	d : 0.07	2 : 0.07	f : 0.07	c : 0.07	] : 0.03	3 : 0.03	h : 0.01	a : 0.01	
] : 0.17	i : 0.14	4 : 0.08	g : 0.08	2 : 0.08	e : 0.08	c : 0.07	3 : 0.07	= : 0.07	d : 0.05	b : 0.03	f : 0.01	
c : 0.19	4 : 0.10	e : 0.10	b : 0.10	d : 0.08	g : 0.07	i : 0.07	= : 0.07	2 : 0.05	f : 0.03	3 : 0.03	a : 0.01	] : 0.01	: : 0.01	
c : 0.19	4 : 0.12	b : 0.12	g : 0.08	e : 0.08	= : 0.08	d : 0.07	i : 0.07	] : 0.07	3 : 0.03	f : 0.01	: : 0.01	
c : 0.19	d : 0.12	= : 0.12	4 : 0.10	e : 0.08	g : 0.07	i : 0.05	b : 0.05	] : 0.05	2 : 0.03	f : 0.03	a : 0.03	: : 0.01	
] : 0.16	d : 0.12	= : 0.12	c : 0.10	4 : 0.08	e : 0.08	2 : 0.07	g : 0.05	f : 0.03	i : 0.03	a : 0.03	: : 0.01	3 : 0.01	[ : 0.01	b : 0.01	
d : 0.19	c : 0.14	e : 0.12	= : 0.12	g : 0.07	2 : 0.05	4 : 0.05	f : 0.03	] : 0.03	i : 0.03	: : 0.03	b : 0.03	[ : 0.01	! : 0.01	3 : 0.01	

#score	718.6313507597941
#seq	56
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_UTR_m1_run2.txt

#BEAR
eeeeedddd!!eeeee[a[bbnnnnnbb]aeeeee333dd	chr19:13873310-13873592(+)$1	282	106	146	15.1056
iiii[bb!!eeeee[cccrrrrrrrrrccc22eeeee444	chr8:48955559-48955842(+)$1	283	141	181	10.3658
=====####bb[dddd"""ccclllccc333dddd]bb33	chr19:17387585-17387812(+)$1	227	71	111	13.3416
b[eeeee[bbdddd[ccc[bbnnnnnbb333ccc]dddd]	chr8:124383045-124383257(-)$1	212	79	119	15.9944
!cccdddd[a!!eeeee!!bbannnnna]bb22eeeee22	chr12:118810497-118810784(-)$1	287	64	104	13.8300
!!eeeee####eeeee[ddddnnnnndddd333eeeeeee	chr21:34143831-34144104(-)$1	273	103	143	15.8229
d:::dddd!!ddddccc[cccnnnnnccc]ccc]dddddd	chr2:61577294-61577520(-)$1	226	43	83	12.0685
eeeedddd[eeeee!!ddddnnnnndddd22eeeee]ddd	chr16:24802866-24803219(+)$1	353	290	330	12.2901
ggggggg!!a[ccc!!bb[bbnnnnnbb]bb55555ccc]	chr3:9984397-9984634(+)$1	237	121	161	13.0199
ggg%%%%%%dddd$$$$$cccnnnnnccc4444dddd444	chr2:128046135-128046423(-)$1	288	74	114	12.5208
##eeeee[ccc!!bb"""cccnnnnnccc4444bb22ccc	chr5:75858120-75858413(+)$1	293	97	137	16.1418
"ccc!!dddd!!dddd[ddddnnnnndddd4444dddd]d	chr12:69084408-69084626(+)$1	218	60	100	14.0029
hhhhhhh!!ccc!!ccc[bboooooobb22ccc22ccc33	chr11:118920219-118920445(-)$1	226	169	209	12.2120
c[ffffff!!ccc!!ccc[bbnnnnnbb]ccccccfffff	chr4:79799882-79800146(+)$1	264	103	143	14.6827
c[dddd####eeeee"""bboooooobb333eeeee333d	chr5:154172176-154172455(+)$1	279	202	242	14.7874
"""dddd!!bb!!ccc!!ccclllccc4444ccc333bb2	chr1:15986831-15987071(+)$1	240	2	42	12.9677
[cccddddeeeee!!ccc[bbnnnnnbbccc22eeeee44	chr4:52743825-52744095(+)$1	270	14	54	15.2730
eeeebb!!ffffff[ccc[bbnnnnnbb]ccc]ffffff2	chr7:75609556-75609829(+)$1	273	189	229	13.7575
eeeeccc!!eeeee####eeeeellleeeee4444eeeee	chr1:32843470-32843704(-)$1	234	76	116	11.6250
eeeee[eeeee####bbrrrrrrrrrbb22eeeee]eeee	chr1:163315374-163315639(+)$1	265	191	231	9.5954
fffff$$$$$===========nnnnn===========]ff	chr8:124369709-124369947(-)$1	238	50	90	14.1175
e[eeeee"""bb[ccccccooooooccc22cccbb]eeee	chr8:56922600-56922808(+)$1	208	60	100	12.0112
H::eeeee[ccc[bbccc[bbnnnnnbbccc]bbccceee	chr17:41113161-41113400(-)$1	239	66	106	11.9619
##eeeee[ggggggg[aooooooaggggggg333eeeee2	chr2:201994392-201994776(+)$1	384	207	247	10.1032
hh!!ggggggg[bb"""cccnnnnnccc22bbggggggg2	chr17:48829497-48829722(+)$1	225	43	83	13.1574
eeeeccc[ccc[dddd[ddddnnnnndddddddd]ccc]c	chr8:124383833-124384109(-)$1	276	35	75	13.1177
"""dddd!!accc[dddd[bbannnnna]bb]dddd]ccc	chr19:33140495-33140745(-)$1	250	61	101	13.6101
b[eeeee####eeeee[ddddlllddddeeeee4444eee	chr3:156867270-156867486(-)$1	216	56	96	11.1414
c!!eeeee!!bb[bb"""cccnnnnnccc4444bb]bb44	chr20:33000330-33000543(+)$1	213	129	169	16.1378
b!!eeeeedddd[a"""cccmmmmccc333adddd]eeee	chr2:63053121-63053403(+)$1	282	124	164	10.6412
f!!==========bb!!cccnnnnnccc22bb]=======	chr7:151877735-151877971(-)$1	236	160	200	14.3156
====ffffff[ccc[bb[cccnnnnnccc]bb]ccc]fff	chr10:28879643-28879865(+)$1	222	135	175	13.5114
fffff$$$$$ccc"""eeeeennnnneeeee333ccc]ff	chr11:77413358-77413623(-)$1	265	118	158	13.1046
dddd!!bb[eeeee####cccnnnnnccc55555eeeee]	chr3:184039667-184039987(+)$1	320	41	81	13.0618
dddd==========[bb!!bbnnnnnbb7777777bb]==	chr11:57558890-57559146(+)$1	256	36	76	12.4021
###ccc"""ccc[dddd[cccnnnnnccc]dddd]ccc33	chr8:99591790-99592114(-)$1	324	83	123	15.6772
!a!!dddd[dddd!!eeeeeooooooeeeee333dddd33	chrX:134185075-134185319(-)$1	244	9	49	12.0744
gggg$$$$$ccc[eeeee[cccmmmmccc]eeeeeccc44	chr17:79633692-79633977(+)$1	285	78	118	10.0366
FFeeeee[cccccc"""ddddnnnnndddd22ccc]ccc]	chr20:32399072-32399332(+)$1	260	10	50	13.9007
ggg[eeeee[dddd[a[cccbbmmmmbb]ccca]dddd]e	chr5:157285838-157286170(-)$1	332	73	113	10.5345
:hhhhhhhh"""dddd"""bbnnnnnbb4444dddd22hh	chr11:63953628-63953843(+)$1	215	107	147	13.2066
[eeeee[bb[a[bb[bb"""annnnna333bb]bb]a]bb	chr18:9614121-9614370(-)$1	249	15	55	13.8214
a[eeeee!!eeeee[bb!!bbnnnnnbb22bb]eeeee44	chr1:156104589-156104846(+)$1	257	40	80	16.9266
ddd"""bb[eeeeedddd[annnnna]dddd4444eeeee	chr3:107241720-107242047(+)$1	327	112	152	12.3498
gg22ddddccc[ddddabb!!annnnna22bb]a]dddd]	chr12:76453477-76453690(-)$1	213	73	113	11.4750
[dddd####eeeeeddddcccooooooccc]dddd22eee	chr20:62367179-62367415(+)$1	236	143	183	11.4690
dda[ggggggg[dddd!!cccmmmmccc333dddd]gggg	chr1:71546535-71546800(-)$1	265	200	240	11.4821
::::dddd!!ccc####a[bbnnnnnbb]a333ccc22dd	chr1:29313859-29314114(+)$1	255	207	247	13.3132
f:::ccc"""ffffff"""bbnnnnnbb333ffffff333	chr1:53726148-53726374(-)$1	226	70	110	13.3424
:ggggggg!!ddddgggggggnnnnnggggggg22ddddg	chr12:57453580-57453938(-)$1	358	47	87	12.3143
dd[bbiiiiiiiii!!eeeeennnnneeeee]iiiiiiii	chr21:34971363-34971634(-)$1	271	205	245	12.4182
[eeeee[bb!!ccc!!bb[bbnnnnnbb]bb4444ccc22	chr16:24550842-24551077(+)$1	235	9	49	15.9021
DDDDdddd"""eeeee!!cccnnnnnccc]eeeee4444d	chr17:79804204-79804437(-)$1	233	15	55	11.5685
hhhhhh"""bb####bb[ccclllccc333bb22bb]hhh	chr19:16514449-16514732(-)$1	283	29	69	9.9111

#otherMatches

#Seq PSSM
GCAGAAACUCAAGCGGACCGAGAUCAUCAGCCGCUCCUGG	chr19:13873310-13873592(+)$1	282	106	146	15.1056
CACUUACAAGGUGGACAGGCAUGAUUAUUGGGCCACCAAG	chr8:48955559-48955842(+)$1	283	141	181	10.3658
UCUUUGACGUUGUUUACAUCCACAAUGGCACUGAGGAGAA	chr19:17387585-17387812(+)$1	227	71	111	13.3416
AUGAAGAAACAACUGAUAAUCAAGAAGGCAGUGUGGGUUA	chr8:124383045-124383257(-)$1	212	79	119	15.9944
CCCCUGGCAGGAGCCGCACCUCGGACAGCAGCAGCGGCGG	chr12:118810497-118810784(-)$1	287	64	104	13.8300
GACCGCCGUGCGGGCCGCGGGGAUGUUCCGAAAGGCCCGG	chr21:34143831-34144104(-)$1	273	103	143	15.8229
ACUAGCAGCUAAGGCUCAGUUAUCUAAACAGAGUUCUUUU	chr2:61577294-61577520(-)$1	226	43	83	12.0685
AAAUCAAGCCUUGUUUUAACUUACUGUUAUUAUAAGAUUU	chr16:24802866-24803219(+)$1	353	290	330	12.2901
GGGAGCCAACUGUGGAGCUGACCAAUUCUGCGUGAACACU	chr3:9984397-9984634(+)$1	237	121	161	13.0199
AUAUCAACAUUGACCUAAAGCCCACAGCUGUCCUCAGACC	chr2:128046135-128046423(-)$1	288	74	114	12.5208
UAGGUGGAUGGAAGUUUGCUUAGUUGAAGAAUUGCCACCA	chr5:75858120-75858413(+)$1	293	97	137	16.1418
AGGAGGGAAGUCGCCCCGACUUACGCAGUCUUCAGGGUUC	chr12:69084408-69084626(+)$1	218	60	100	14.0029
ACUGUCCAGGUGAGUUCAGGAUGGAGCCAGGGAAGCAUGG	chr11:118920219-118920445(-)$1	226	169	209	12.2120
AUUUCUCUAAGUUAACAGAAGAGGAACUAUUGGACAGAGA	chr4:79799882-79800146(+)$1	264	103	143	14.6827
UGGGAGAAGGUGGCAGGGUAGAACUGUGAAAUGUCAGGAC	chr5:154172176-154172455(+)$1	279	202	242	14.7874
GAACCUGAGUCAAGUGAGUGACCCUCAGCAGCACGAAGAA	chr1:15986831-15987071(+)$1	240	2	42	12.9677
UCUGGUUUGGGUAAAAGAAUAUAAAUUAUCUGCUACUUUA	chr4:52743825-52744095(+)$1	270	14	54	15.2730
CCAGGACUUCUACGACUGGCUGCAGGAGACAGACGUGGAU	chr7:75609556-75609829(+)$1	273	189	229	13.7575
CUGAAGCAGCGGGCGGAACAGAGCAUCUCUGAAGAGCCCG	chr1:32843470-32843704(-)$1	234	76	116	11.6250
CCUUUCAGAUAAUAGGGAAAAAUUAGCCAGUAUCUUAAAG	chr1:163315374-163315639(+)$1	265	191	231	9.5954
GAUAAAAGAGUAGCAUUUUUCAUGAGGAAAGGUGCUGAUU	chr8:124369709-124369947(-)$1	238	50	90	14.1175
CAGCCUUAGAGCACAGGGAGACCCGUCCAUUUGGCAGGGG	chr8:56922600-56922808(+)$1	208	60	100	12.0112
UGCUGAGAGUGACUCGCCGUGGGGAACAGGCUGAUCAUUU	chr17:41113161-41113400(-)$1	239	66	106	11.9619
AGUCAUCCAUCAGGUUGAAGAAGCACUUGAUACAGAUGAG	chr2:201994392-201994776(+)$1	384	207	247	10.1032
CCCCAAAUUUUGCGUUGUAGGACUACUGUUCGAAGAUUUU	chr17:48829497-48829722(+)$1	225	43	83	13.1574
CAAAGUGAUUCCAGUUACUCGGUCAUUGAGGGCUAGAAAC	chr8:124383833-124384109(-)$1	276	35	75	13.1177
CAAAGGAAGCCUGUCGAGCAGCAUCCAGUCUACUUGUCAG	chr19:33140495-33140745(-)$1	250	61	101	13.6101
UGUUAAAUCCAGUAGUUAACAUGUUGUUAUUAUAUCUUUU	chr3:156867270-156867486(-)$1	216	56	96	11.1414
CUAAUAGAAAUUGCACUUAGCUGUUUGUUUUUCUGGAAGA	chr20:33000330-33000543(+)$1	213	129	169	16.1378
GCUCUUGCUACUAGCAGCAUCAAUAUGAAACAGUAUGCAA	chr2:63053121-63053403(+)$1	282	124	164	10.6412
AGAGAAAUUGAGACAGGUAAACACAUUGUAUGUUCUCAGU	chr7:151877735-151877971(-)$1	236	160	200	14.3156
UUCUUUGAAAUGUAUGUUUGACUUAUUCGUAUUUAUUUUU	chr10:28879643-28879865(+)$1	222	135	175	13.5114
GAGCAGCCUAUGGAUUUAGAAAACCGUUCUACAGCCAAUG	chr11:77413358-77413623(-)$1	265	118	158	13.1046
CUUCAGCUACUUCCCCAGCUCAGGAGGAGGAAAUGgaaga	chr3:184039667-184039987(+)$1	320	41	81	13.0618
GCGGCGGCUCCGCCCCUUACCUUCAUGGACGACUCAGAGG	chr11:57558890-57559146(+)$1	256	36	76	12.4021
UUUUACUUUUUUAGCAUCCUUUUAUCAAGAAUGCCAAACC	chr8:99591790-99592114(-)$1	324	83	123	15.6772
AGCUGGACACAGCCCCUGGACAGUGAUCCAGACAGCUGGC	chrX:134185075-134185319(-)$1	244	9	49	12.0744
UCGCUAGGGAGCCUCCCGGCGUGGAGAUGGCGGGAGCUGG	chr17:79633692-79633977(+)$1	285	78	118	10.0366
ccgggccgggcgugggggccugugggagguggcgcggccg	chr20:32399072-32399332(+)$1	260	10	50	13.9007
GGGGAGUUCGAGGCGGCGGGCGGCGGUGACCCCGGCCUGG	chr5:157285838-157286170(-)$1	332	73	113	10.5345
GGAGCAGGUGAAGGGGGAGGGGCGGGCUGAGGCCCCGAGC	chr11:63953628-63953843(+)$1	215	107	147	13.2066
cggggcgggggggaggcgggcggggggggggcgucgcgcc	chr18:9614121-9614370(-)$1	249	15	55	13.8214
GACUGGUGGAGAUUGACAAUGGGAAGCAGCGUGAGUUUGA	chr1:156104589-156104846(+)$1	257	40	80	16.9266
GUGUACAGUGAAGCGGAGGCAGAGCGGCUCCGCGAGCUUC	chr3:107241720-107242047(+)$1	327	112	152	12.3498
AGAAUGUGAAUGGAAACCAGAUGAAGAAGAUGAGAUUUCG	chr12:76453477-76453690(-)$1	213	73	113	11.4750
UCAGGAAGACCAGUGUUGCCCGAGGAGGGGCCGGCCUGCU	chr20:62367179-62367415(+)$1	236	143	183	11.4690
AUUGGGACGGAGUUUGUUAGUGGAAGCUUUCCGAGGUCCG	chr1:71546535-71546800(-)$1	265	200	240	11.4821
CAAACAGCAGCUGAAGGAGAUAAUUGGUGUGAACAGAAGC	chr1:29313859-29314114(+)$1	255	207	247	13.3132
CCCAUCCUCUGCAUCUAUACCCCACAGGACAAGGUGUUCU	chr1:53726148-53726374(-)$1	226	70	110	13.3424
AGAAAGGACAGAAGGAUAUUUCUAACGAGUAUUAUCUUCU	chr12:57453580-57453938(-)$1	358	47	87	12.3143
UGUGUAGUUUUUUUAGUUUGAUGAAUUUAAGAAAAAAAAU	chr21:34971363-34971634(-)$1	271	205	245	12.4182
CGCGCCGCCCGUGCAAUCCCUGCUUAAGAGACCCCGCAGU	chr16:24550842-24551077(+)$1	235	9	49	15.9021
GGCCGUGCGCCUCAUCACCCUGGAGGAGGAGAUGACCAAG	chr17:79804204-79804437(-)$1	233	15	55	11.5685
UGACUUAAAGUCCCAGGAAGACGAUCUGAACCGAGCCAAG	chr19:16514449-16514732(-)$1	283	29	69	9.9111

#DB
(((((((((..(((((.(.((.....)).))))))...))	chr19:13873310-13873592(+)$1	1	106	146	15.1056
((((.((..(((((.(((.........)))..)))))...	chr8:48955559-48955842(+)$1	1	141	181	10.3658
(((((....((.((((...(((...)))...)))).))..	chr19:17387585-17387812(+)$1	1	71	111	13.3416
(.(((((.((((((.(((.((.....))...))).)))).	chr8:124383045-124383257(-)$1	1	79	119	15.9944
.(((((((.(..(((((..(((.....).))..)))))..	chr12:118810497-118810784(-)$1	1	64	104	13.8300
..(((((....(((((.((((.....))))...)))))))	chr21:34143831-34144104(-)$1	1	103	143	15.8229
)...((((..(((((((.(((.....))).))).))))))	chr2:61577294-61577520(-)$1	1	43	83	12.0685
))))((((.(((((..((((.....))))..))))).)))	chr16:24802866-24803219(+)$1	1	290	330	12.2901
(((((((..(.(((..((.((.....)).)).....))).	chr3:9984397-9984634(+)$1	1	121	161	13.0199
(((......((((.....(((.....)))....))))...	chr2:128046135-128046423(-)$1	1	74	114	12.5208
..(((((.(((..((...(((.....)))....))..)))	chr5:75858120-75858413(+)$1	1	97	137	16.1418
.(((..((((..((((.((((.....))))....)))).)	chr12:69084408-69084626(+)$1	1	60	100	14.0029
(((((((..(((..(((.((......))..)))..)))..	chr11:118920219-118920445(-)$1	1	169	209	12.2120
(.((((((..(((..(((.((.....)).)))))))))))	chr4:79799882-79800146(+)$1	1	103	143	14.6827
(.((((....(((((...((......))...)))))...)	chr5:154172176-154172455(+)$1	1	202	242	14.7874
...((((..((..(((..(((...)))....)))...)).	chr1:15986831-15987071(+)$1	1	2	42	12.9677
.((((((((((((..(((.((.....)))))..)))))..	chr4:52743825-52744095(+)$1	1	14	54	15.2730
((((((..((((((.(((.((.....)).))).)))))).	chr7:75609556-75609829(+)$1	1	189	229	13.7575
))))(((..(((((....(((((...)))))....)))))	chr1:32843470-32843704(-)$1	1	76	116	11.6250
(((((.(((((....((.........))..))))).))))	chr1:163315374-163315639(+)$1	1	191	231	9.5954
(((((.....(((((((((((.....))))))))))).))	chr8:124369709-124369947(-)$1	1	50	90	14.1175
(.(((((...((.((((((......)))..))))).))))	chr8:56922600-56922808(+)$1	1	60	100	12.0112
(..(((((.(((.(((((.((.....))))).))))))))	chr17:41113161-41113400(-)$1	1	66	106	11.9619
..(((((.(((((((.(......))))))))...))))).	chr2:201994392-201994776(+)$1	1	207	247	10.1032
((..(((((((.((...(((.....)))..))))))))).	chr17:48829497-48829722(+)$1	1	43	83	13.1574
))))(((.(((.((((.((((.....)))))))).))).)	chr8:124383833-124384109(-)$1	1	35	75	13.1177
...((((..((((.((((.(((.....).)).)))).)))	chr19:33140495-33140745(-)$1	1	61	101	13.6101
(.(((((....(((((.((((...)))))))))....)))	chr3:156867270-156867486(-)$1	1	56	96	11.1414
(..(((((..((.((...(((.....)))....)).))..	chr20:33000330-33000543(+)$1	1	129	169	16.1378
(..(((((((((.(...(((....)))...))))).))))	chr2:63053121-63053403(+)$1	1	124	164	10.6412
(..((((((((((((..(((.....)))..)).)))))))	chr7:151877735-151877971(-)$1	1	160	200	14.3156
))))((((((.(((.((.(((.....))).)).))).)))	chr10:28879643-28879865(+)$1	1	135	175	13.5114
(((((.....(((...(((((.....)))))...))).))	chr11:77413358-77413623(-)$1	1	118	158	13.1046
((((..((.(((((....(((.....))).....))))).	chr3:184039667-184039987(+)$1	1	41	81	13.0618
((((((((((((((.((..((.....)).......)).))	chr11:57558890-57559146(+)$1	1	36	76	12.4021
...(((...(((.((((.(((.....))).)))).)))..	chr8:99591790-99592114(-)$1	1	83	123	15.6772
.(..((((.((((..(((((......)))))...))))..	chrX:134185075-134185319(-)$1	1	9	49	12.0744
((((.....(((.(((((.(((....))).))))))))..	chr17:79633692-79633977(+)$1	1	78	118	10.0366
(((((((.((((((...((((.....))))..))).))).	chr20:32399072-32399332(+)$1	1	10	50	13.9007
(((.(((((.((((.(.(((((....)).)))).)))).)	chr5:157285838-157286170(-)$1	1	73	113	10.5345
.((((((((...((((...((.....))....))))..))	chr11:63953628-63953843(+)$1	1	107	147	13.2066
.(((((.((.(.((.((...(.....)...)).)).).))	chr18:9614121-9614370(-)$1	1	15	55	13.8214
(.(((((..(((((.((..((.....))..)).)))))..	chr1:156104589-156104846(+)$1	1	40	80	16.9266
(((...((.(((((((((.(.....).))))....)))))	chr3:107241720-107242047(+)$1	1	112	152	12.3498
))..))))(((.(((((((..(.....)..)).).)))).	chr12:76453477-76453690(-)$1	1	73	113	11.4750
.((((....((((((((((((......))).))))..)))	chr20:62367179-62367415(+)$1	1	143	183	11.4690
(((.(((((((.((((..(((....)))...)))).))))	chr1:71546535-71546800(-)$1	1	200	240	11.4821
....((((..(((....(.((.....)).)...)))..))	chr1:29313859-29314114(+)$1	1	207	247	13.3132
)...(((...((((((...((.....))...))))))...	chr1:53726148-53726374(-)$1	1	70	110	13.3424
.(((((((..(((((((((((.....)))))))..)))))	chr12:57453580-57453938(-)$1	1	47	87	12.3143
((.(((((((((((..(((((.....))))).))))))))	chr21:34971363-34971634(-)$1	1	205	245	12.4182
.(((((.((..(((..((.((.....)).))....)))..	chr16:24550842-24551077(+)$1	1	9	49	15.9021
((((((((...(((((..(((.....))).)))))....)	chr17:79804204-79804437(-)$1	1	15	55	11.5685
((((((...((....((.(((...)))...))..)).)))	chr19:16514449-16514732(-)$1	1	29	69	9.9111

#PSSM
e : 0.12	d : 0.11	g : 0.09	[ : 0.07	f : 0.07	b : 0.05	! : 0.05	# : 0.05	" : 0.05	h : 0.05	c : 0.05	: : 0.05	= : 0.03	i : 0.01	H : 0.01	F : 0.01	a : 0.01	D : 0.01	
e : 0.14	[ : 0.11	g : 0.11	d : 0.11	! : 0.07	: : 0.07	h : 0.07	c : 0.05	# : 0.05	= : 0.03	" : 0.03	f : 0.03	i : 0.01	a : 0.01	F : 0.01	D : 0.01	
e : 0.29	g : 0.09	d : 0.09	! : 0.09	: : 0.07	c : 0.05	h : 0.05	f : 0.05	= : 0.03	" : 0.03	i : 0.01	# : 0.01	2 : 0.01	a : 0.01	[ : 0.01	D : 0.01	
e : 0.35	d : 0.11	c : 0.07	= : 0.05	: : 0.05	g : 0.05	h : 0.05	f : 0.05	! : 0.03	[ : 0.03	i : 0.01	% : 0.01	" : 0.01	2 : 0.01	b : 0.01	D : 0.01	
e : 0.29	d : 0.22	g : 0.07	f : 0.07	c : 0.07	= : 0.05	h : 0.05	! : 0.03	b : 0.03	[ : 0.01	% : 0.01	$ : 0.01	" : 0.01	
e : 0.25	d : 0.22	g : 0.07	c : 0.07	h : 0.05	$ : 0.05	b : 0.03	# : 0.03	! : 0.03	f : 0.03	= : 0.03	% : 0.01	[ : 0.01	" : 0.01	i : 0.01	
e : 0.24	d : 0.22	g : 0.07	b : 0.05	# : 0.05	c : 0.05	$ : 0.05	h : 0.03	f : 0.03	= : 0.03	" : 0.03	[ : 0.03	% : 0.01	! : 0.01	i : 0.01	
d : 0.18	! : 0.14	# : 0.09	[ : 0.09	e : 0.09	" : 0.07	b : 0.07	$ : 0.05	g : 0.05	f : 0.03	= : 0.03	% : 0.01	h : 0.01	i : 0.01	
! : 0.22	[ : 0.11	# : 0.09	" : 0.09	c : 0.07	d : 0.05	b : 0.05	e : 0.05	$ : 0.05	g : 0.05	f : 0.03	= : 0.03	% : 0.01	h : 0.01	i : 0.01	
e : 0.16	c : 0.14	! : 0.12	b : 0.07	d : 0.07	" : 0.07	a : 0.05	# : 0.05	g : 0.05	f : 0.03	$ : 0.03	= : 0.03	[ : 0.03	i : 0.01	
c : 0.22	e : 0.18	d : 0.12	b : 0.09	! : 0.07	= : 0.05	g : 0.05	# : 0.03	[ : 0.03	f : 0.03	" : 0.03	a : 0.01	i : 0.01	
e : 0.24	c : 0.22	d : 0.12	[ : 0.11	! : 0.07	= : 0.05	f : 0.03	# : 0.03	b : 0.03	g : 0.01	" : 0.01	i : 0.01	
e : 0.25	d : 0.22	c : 0.14	[ : 0.11	! : 0.05	= : 0.05	f : 0.03	# : 0.03	b : 0.03	g : 0.01	i : 0.01	
e : 0.25	d : 0.20	c : 0.11	b : 0.11	! : 0.07	# : 0.05	f : 0.03	= : 0.03	$ : 0.01	g : 0.01	[ : 0.01	a : 0.01	" : 0.01	i : 0.01	
d : 0.18	[ : 0.14	e : 0.12	! : 0.12	# : 0.09	c : 0.07	b : 0.07	" : 0.07	g : 0.03	$ : 0.01	= : 0.01	f : 0.01	
c : 0.18	d : 0.18	e : 0.12	" : 0.12	b : 0.11	! : 0.09	# : 0.05	$ : 0.01	= : 0.01	[ : 0.01	a : 0.01	f : 0.01	g : 0.01	
c : 0.16	" : 0.16	b : 0.14	[ : 0.11	e : 0.09	d : 0.09	! : 0.07	# : 0.05	a : 0.03	$ : 0.01	= : 0.01	g : 0.01	
c : 0.20	d : 0.16	" : 0.12	! : 0.11	[ : 0.09	e : 0.07	b : 0.05	a : 0.03	# : 0.03	$ : 0.01	r : 0.01	= : 0.01	o : 0.01	g : 0.01	
c : 0.31	[ : 0.22	d : 0.11	" : 0.07	e : 0.07	! : 0.05	b : 0.05	r : 0.03	= : 0.01	o : 0.01	g : 0.01	
c : 0.33	b : 0.31	d : 0.11	e : 0.07	r : 0.03	o : 0.03	= : 0.01	" : 0.01	a : 0.01	! : 0.01	g : 0.01	
b : 0.29	c : 0.25	d : 0.09	o : 0.09	n : 0.07	e : 0.05	r : 0.03	= : 0.01	m : 0.01	a : 0.01	! : 0.01	g : 0.01	
n : 0.62	o : 0.11	a : 0.05	l : 0.05	r : 0.03	c : 0.03	m : 0.03	e : 0.01	b : 0.01	
n : 0.68	o : 0.11	l : 0.07	m : 0.07	r : 0.03	e : 0.01	
n : 0.68	l : 0.09	o : 0.09	m : 0.07	r : 0.03	a : 0.01	
n : 0.68	o : 0.09	c : 0.05	m : 0.05	r : 0.03	l : 0.03	g : 0.01	d : 0.01	
n : 0.61	c : 0.14	o : 0.07	r : 0.03	d : 0.03	m : 0.03	l : 0.01	g : 0.01	a : 0.01	
b : 0.31	c : 0.31	d : 0.11	e : 0.07	n : 0.05	g : 0.03	r : 0.01	= : 0.01	a : 0.01	] : 0.01	o : 0.01	
b : 0.31	c : 0.29	d : 0.12	e : 0.07	a : 0.05	3 : 0.05	g : 0.03	4 : 0.01	= : 0.01	
c : 0.24	] : 0.16	3 : 0.14	2 : 0.12	d : 0.11	e : 0.09	4 : 0.03	g : 0.03	= : 0.01	7 : 0.01	
3 : 0.14	2 : 0.14	c : 0.12	d : 0.09	] : 0.09	4 : 0.09	e : 0.09	b : 0.07	a : 0.03	g : 0.03	= : 0.01	5 : 0.01	7 : 0.01	
b : 0.20	e : 0.16	c : 0.14	3 : 0.12	4 : 0.11	2 : 0.05	d : 0.05	g : 0.03	= : 0.01	a : 0.01	5 : 0.01	7 : 0.01	] : 0.01	
c : 0.14	4 : 0.14	e : 0.12	b : 0.12	d : 0.11	3 : 0.09	2 : 0.07	] : 0.05	5 : 0.03	= : 0.01	7 : 0.01	f : 0.01	g : 0.01	
e : 0.14	d : 0.14	c : 0.12	4 : 0.12	] : 0.11	3 : 0.09	2 : 0.05	5 : 0.03	g : 0.03	= : 0.01	b : 0.01	7 : 0.01	a : 0.01	f : 0.01	i : 0.01	
e : 0.20	d : 0.16	c : 0.11	b : 0.09	4 : 0.09	2 : 0.05	3 : 0.05	] : 0.03	5 : 0.03	f : 0.03	= : 0.03	g : 0.01	7 : 0.01	a : 0.01	i : 0.01	
e : 0.24	d : 0.20	c : 0.11	b : 0.09	] : 0.07	4 : 0.07	2 : 0.03	f : 0.03	= : 0.03	5 : 0.01	3 : 0.01	g : 0.01	7 : 0.01	i : 0.01	
e : 0.20	d : 0.18	c : 0.16	] : 0.14	f : 0.05	3 : 0.03	2 : 0.03	= : 0.03	4 : 0.03	b : 0.03	5 : 0.01	g : 0.01	i : 0.01	
e : 0.22	c : 0.16	d : 0.14	] : 0.07	2 : 0.07	3 : 0.05	b : 0.05	f : 0.05	= : 0.03	g : 0.03	4 : 0.03	a : 0.01	i : 0.01	
e : 0.25	c : 0.16	d : 0.14	] : 0.07	3 : 0.05	4 : 0.05	b : 0.05	f : 0.05	g : 0.03	2 : 0.03	= : 0.01	i : 0.01	h : 0.01	
e : 0.20	d : 0.12	4 : 0.12	3 : 0.11	f : 0.09	c : 0.07	] : 0.05	2 : 0.03	b : 0.03	g : 0.03	= : 0.03	h : 0.03	i : 0.01	
e : 0.18	d : 0.12	4 : 0.11	2 : 0.11	3 : 0.09	] : 0.09	f : 0.07	c : 0.05	= : 0.03	h : 0.03	g : 0.03	b : 0.01	i : 0.01	

#score	703.5266592626349
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_UTR_m2_run2.txt

#BEAR
ggggg[dddd[ddddoooooodddd]dddd]gggggg	chr2:97525522-97525809(-)$1	287	140	177	13.7126
ohhhhhhhh]iiiiiiiii22dddd]ccc333dddd]	chr11:289415-289685(+)$1	270	187	224	11.2911
bbcccdddddddd[dddd!!ccclllccc22dddd]d	chr11:122929515-122929719(-)$1	204	110	147	11.9626
ffffffiiiiiiiiiooooooiiiiiiiii333ffff	chr9:100777550-100777862(+)$1	312	13	50	12.4754
[a[dddd[a[a[ddddmmmmddddaa]dddd]a]bb2	chr19:13054502-13054836(+)$1	334	214	251	11.5891
bb!!a!!ccc!!ddddnnnnndddd]ccc22a]bbcc	chr19:3053628-3053889(-)$1	261	42	79	14.8801
bbcccdddddddd[dddd!!ccclllccc22dddd]d	chr11:122929519-122929730(-)$1	211	121	158	11.9626
[eeeeedddd[ddddrrrrrrrrrdddd333dddd22	chr5:177022806-177023059(+)$1	253	152	189	12.0947
===ccc[a!!a[ddddmmmmdddd]a4444a]ccc22	chr11:62283507-62283768(-)$1	261	109	146	14.5442
=======]ggggggg]iiiiiiiiibb]a22dddd22	chr1:150192890-150193164(-)$1	274	217	254	11.9602
c####==========mmmm==========22ccc22c	chr6:31698294-31698539(-)$1	245	23	60	13.6784
iiiiiiii####cccooooooccc333iiiiiiiii]	chr14:70238205-70238473(+)$1	268	144	181	13.5976
hhhh[cccccc[ddddnnnnndddd]ccc22ccc333	chr2:220403042-220403331(+)$1	289	244	281	15.4349
ff!!bb!!ccc[eeeeellleeeee]ccc]bb]ffff	chr6:111136056-111136365(-)$1	309	233	270	10.8695

#otherMatches

#Seq PSSM
UUCCUGUACAGGGCUGGGAAAGGCUGUGUGAGGGGAG	chr2:97525522-97525809(-)$1	287	140	177	13.7126
CCUUUGGGGUCUGAGCCCCUCUGAGAGUCGAGCUCCU	chr11:289415-289685(+)$1	270	187	224	11.2911
UCCUUAGCAGGACCCUAGCACUGUCACAGACCUGGAG	chr11:122929515-122929719(-)$1	204	110	147	11.9626
UUUGUUGUUGUUGCCUCCAUUGGCAAUAAUCUAAGCA	chr9:100777550-100777862(+)$1	312	13	50	12.4754
ACGAGCUGUAGAGAGGCCUGCCUCCAGGGCUGGACUG	chr19:13054502-13054836(+)$1	334	214	251	11.5891
CCAGGAGGAUGAUGGCGAGAAGUCGGAUUAGCAGGGG	chr19:3053628-3053889(-)$1	261	42	79	14.8801
UCCUUAGCAGGACCCUAGCACUGUCACAGACCUGGAG	chr11:122929519-122929730(-)$1	211	121	158	11.9626
AUGGUUGUCCAUUCUGGGGCUUAAAGAACUGGGACCA	chr5:177022806-177023059(+)$1	253	152	189	12.0947
ACCCAGGGGUGGUGGUCCCAGCCAGUUUGGUGCUGAC	chr11:62283507-62283768(-)$1	261	109	146	14.5442
AGUGAUCACAUCUUUGUUUCUUCAUGUACGAUAGCUA	chr1:150192890-150193164(-)$1	274	217	254	11.9602
AGGGAAUCCUGGAGCACUUGUUCCGGGAUGGUGUGGU	chr6:31698294-31698539(-)$1	245	23	60	13.6784
UGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAAG	chr14:70238205-70238473(+)$1	268	144	181	13.5976
GGAGAGGAUGGCCCAGCAGGCCUGGCCCAGCUCCCAG	chr2:220403042-220403331(+)$1	289	244	281	15.4349
CCAGUCGGGCCGUGCCCGAGGGGCGAGGCGGAGGGGG	chr6:111136056-111136365(-)$1	309	233	270	10.8695

#DB
(((((.((((.((((......)))).)))).))))))	chr2:97525522-97525809(-)$1	1	140	177	13.7126
.)))))))).)))))))))..)))).)))...)))).	chr11:289415-289685(+)$1	1	187	224	11.2911
)))))))))((((.((((..(((...)))..)))).)	chr11:122929515-122929719(-)$1	1	110	147	11.9626
(((((((((((((((......)))))))))...))))	chr9:100777550-100777862(+)$1	1	13	50	12.4754
.(.((((.(.(.((((....)))))).)))).).)).	chr19:13054502-13054836(+)$1	1	214	251	11.5891
((..(..(((..((((.....)))).)))..).))))	chr19:3053628-3053889(-)$1	1	42	79	14.8801
)))))))))((((.((((..(((...)))..)))).)	chr11:122929519-122929730(-)$1	1	121	158	11.9626
.(((((((((.((((.........))))...))))..	chr5:177022806-177023059(+)$1	1	152	189	12.0947
((((((.(..(.((((....)))).)....).)))..	chr11:62283507-62283768(-)$1	1	109	146	14.5442
))))))).))))))).))))))))))).)..))))..	chr1:150192890-150193164(-)$1	1	217	254	11.9602
(....((((((((((....))))))))))..)))..)	chr6:31698294-31698539(-)$1	1	23	60	13.6784
((((((((....(((......)))...))))))))).	chr14:70238205-70238473(+)$1	1	144	181	13.5976
((((.((((((.((((.....)))).)))..)))...	chr2:220403042-220403331(+)$1	1	244	281	15.4349
((..((..(((.(((((...))))).))).)).))))	chr6:111136056-111136365(-)$1	1	233	270	10.8695

#PSSM
b : 0.21	f : 0.14	[ : 0.14	= : 0.14	g : 0.07	o : 0.07	c : 0.07	i : 0.07	h : 0.07	
b : 0.21	h : 0.14	f : 0.14	= : 0.14	g : 0.07	a : 0.07	e : 0.07	# : 0.07	i : 0.07	
h : 0.14	c : 0.14	! : 0.14	= : 0.14	g : 0.07	f : 0.07	[ : 0.07	e : 0.07	# : 0.07	i : 0.07	
c : 0.21	h : 0.14	! : 0.14	g : 0.07	f : 0.07	d : 0.07	e : 0.07	= : 0.07	# : 0.07	i : 0.07	
c : 0.21	g : 0.07	h : 0.07	f : 0.07	d : 0.07	a : 0.07	e : 0.07	= : 0.07	# : 0.07	i : 0.07	[ : 0.07	b : 0.07	
d : 0.21	c : 0.14	= : 0.14	[ : 0.07	h : 0.07	f : 0.07	! : 0.07	e : 0.07	i : 0.07	b : 0.07	
d : 0.35	i : 0.14	! : 0.14	= : 0.14	h : 0.07	[ : 0.07	c : 0.07	
d : 0.28	i : 0.14	c : 0.14	h : 0.07	[ : 0.07	a : 0.07	] : 0.07	= : 0.07	! : 0.07	
d : 0.28	c : 0.21	h : 0.07	i : 0.07	a : 0.07	! : 0.07	g : 0.07	= : 0.07	# : 0.07	
d : 0.28	c : 0.21	] : 0.07	i : 0.07	[ : 0.07	! : 0.07	g : 0.07	= : 0.07	# : 0.07	
[ : 0.14	i : 0.14	d : 0.14	a : 0.14	c : 0.14	! : 0.07	g : 0.07	= : 0.07	# : 0.07	
d : 0.28	[ : 0.28	i : 0.14	! : 0.07	g : 0.07	= : 0.07	# : 0.07	
d : 0.57	i : 0.14	g : 0.07	= : 0.07	c : 0.07	e : 0.07	
d : 0.42	i : 0.14	[ : 0.14	g : 0.07	= : 0.07	c : 0.07	e : 0.07	
d : 0.57	i : 0.14	g : 0.07	= : 0.07	c : 0.07	e : 0.07	
d : 0.42	o : 0.21	i : 0.07	r : 0.07	] : 0.07	m : 0.07	e : 0.07	
o : 0.21	m : 0.21	i : 0.14	d : 0.14	n : 0.14	r : 0.07	e : 0.07	
o : 0.21	m : 0.21	i : 0.14	d : 0.14	n : 0.14	r : 0.07	l : 0.07	
o : 0.21	m : 0.21	i : 0.14	! : 0.14	n : 0.14	r : 0.07	l : 0.07	
o : 0.21	! : 0.14	m : 0.14	n : 0.14	2 : 0.07	r : 0.07	i : 0.07	= : 0.07	l : 0.07	
o : 0.21	c : 0.14	d : 0.14	n : 0.14	2 : 0.07	r : 0.07	i : 0.07	= : 0.07	e : 0.07	
d : 0.42	c : 0.21	i : 0.14	r : 0.07	= : 0.07	e : 0.07	
d : 0.42	c : 0.21	i : 0.14	r : 0.07	= : 0.07	e : 0.07	
d : 0.42	l : 0.14	i : 0.14	r : 0.07	= : 0.07	c : 0.07	e : 0.07	
d : 0.35	l : 0.14	i : 0.14	a : 0.07	] : 0.07	= : 0.07	3 : 0.07	e : 0.07	
] : 0.35	l : 0.14	a : 0.14	i : 0.07	d : 0.07	b : 0.07	= : 0.07	3 : 0.07	
c : 0.42	d : 0.14	i : 0.07	] : 0.07	4 : 0.07	b : 0.07	= : 0.07	3 : 0.07	
c : 0.42	d : 0.21	i : 0.14	4 : 0.07	] : 0.07	= : 0.07	
c : 0.42	d : 0.14	i : 0.14	3 : 0.07	4 : 0.07	a : 0.07	= : 0.07	
2 : 0.42	d : 0.14	3 : 0.14	i : 0.14	4 : 0.07	] : 0.07	
2 : 0.42	3 : 0.21	] : 0.07	d : 0.07	a : 0.07	i : 0.07	b : 0.07	
d : 0.28	3 : 0.14	] : 0.14	c : 0.14	g : 0.07	a : 0.07	i : 0.07	b : 0.07	
d : 0.35	c : 0.21	] : 0.14	g : 0.07	3 : 0.07	a : 0.07	i : 0.07	
d : 0.35	c : 0.21	f : 0.14	g : 0.07	] : 0.07	b : 0.07	i : 0.07	
d : 0.35	f : 0.14	b : 0.14	g : 0.07	c : 0.07	2 : 0.07	i : 0.07	3 : 0.07	
2 : 0.28	] : 0.14	f : 0.14	g : 0.07	d : 0.07	b : 0.07	c : 0.07	i : 0.07	3 : 0.07	
2 : 0.28	] : 0.14	d : 0.14	f : 0.14	c : 0.14	g : 0.07	3 : 0.07	

#score	180.0536563728072
#seq	14
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_transcript_m2_run1.txt

#BEAR
ee[ddddwwwwwwwwwwwwwwdddd]	chr14:95999613-95999814(-)$1	201	143	169	23.1258
[gggggggwwwwwwwwwwwwwwgggg	chr16:30721798-30722008(+)$1	210	39	65	23.5242
eee[dddduuuuuuuuuuuudddd]e	chr2:216292953-216293158(-)$1	205	10	36	23.9084
:::eeeeeuuuuuuuuuuuueeeee:	chr19:49993159-49993376(+)$1	217	78	104	20.4815
"eeeeeyyyyyyyyyyyyyyyyeeee	chr7:98479387-98479605(+)$1	218	157	183	21.6193
eeeeeyyyyyyyyyyyyyyyyeeeee	chr1:173835364-173835588(-)$1	224	4	30	21.3844
========uuuuuuuuuuuu======	chr1:109642861-109643071(+)$1	210	65	91	25.5363
"gggggggtttttttttttggggggg	chr1:76252697-76252922(+)$1	225	89	115	23.4099
i####cccuuuuuuuuuuuuccc333	chr2:207026546-207026765(+)$1	219	17	43	24.5295
========vvvvvvvvvvvvv=====	chr4:119200332-119200542(+)$1	210	173	199	25.3728
========uuuuuuuuuuuu======	chr1:109642872-109643091(+)$1	219	54	80	25.5363
c[fffffftttttttttttffffff]	chr2:21234713-21234936(-)$1	223	43	69	22.1560
dd!!ddddwwwwwwwwwwwwwwdddd	chr6:133137883-133138089(+)$1	206	77	103	22.5044
ff[eeeeevvvvvvvvvvvvveeeee	chr11:62609020-62609227(-)$1	207	96	122	24.2894
ee[ddddwwwwwwwwwwwwwwdddd]	chr14:95999606-95999808(-)$1	202	137	163	23.1258
fff[dddduuuuuuuuuuuudddd]f	chr11:9450216-9450472(+)$1	256	17	43	23.5970
========vvvvvvvvvvvvv=====	chr2:234197442-234197649(+)$1	207	140	166	25.3728
dddeeeeeuuuuuuuuuuuueeeee4	chr3:186504472-186504697(+)$1	225	111	137	24.1503
fffff[bbvvvvvvvvvvvvvbbfff	chr22:39711139-39711348(-)$1	209	165	191	22.7604
:ddddbbvvvvvvvvvvvvvbb]ddd	chr2:21236022-21236249(-)$1	227	193	219	21.8634
iiieeeeeuuuuuuuuuuuueeeee]	chr11:122929556-122929776(-)$1	220	28	54	24.7782
:ffffffvvvvvvvvvvvvvffffff	chr2:216256360-216256613(-)$1	253	217	243	22.0787
dffffffvvvvvvvvvvvvvffffff	chr2:21237327-21237561(-)$1	234	122	148	22.9469
dd####bbvvvvvvvvvvvvvbb333	chr2:234184521-234184725(+)$1	204	138	164	23.2277
"""cccbbuuuuuuuuuuuubb]ccc	chr19:12817193-12817432(-)$1	239	140	166	23.7933
gggggggauuuuuuuuuuuua]gggg	chr2:21236142-21236379(-)$1	237	109	135	25.1209
[ggggggguuuuuuuuuuuugggggg	chr9:139621099-139621319(-)$1	220	142	168	24.9399
ccc!!bbvvvvvvvvvvvvvbb]ccc	chr1:28833974-28834180(+)$1	206	4	30	23.4777
egggggggtttttttttttggggggg	chr17:8076761-8076969(-)$1	208	159	185	23.3047
dddeeeeeuuuuuuuuuuuueeeee4	chr3:186504539-186504740(+)$1	201	44	70	24.1503
###eeeeettttttttttteeeeeff	chr15:25230183-25230414(+)$1	231	80	106	22.9433
gggggggvvvvvvvvvvvvvgggggg	chr3:195791077-195791303(-)$1	226	21	47	24.6198
========uuuuuuuuuuuu======	chr14:20791293-20791500(-)$1	207	87	113	25.5363
[bb!!cccuuuuuuuuuuuucccbbc	chr17:16342724-16342955(+)$1	231	142	168	23.6132
[eeeeeyyyyyyyyyyyyyyyyeeee	chr3:48642380-48642631(-)$1	251	102	128	21.6580
dddd[cccuuuuuuuuuuuucccddd	chr3:184043425-184043634(+)$1	209	166	192	24.0644
gggggawwwwwwwwwwwwwwa]gggg	chr19:5140309-5140588(+)$1	279	133	159	23.2871
###eeeeeuuuuuuuuuuuueeeee3	chr11:62620720-62620926(-)$1	206	84	110	24.6273
=!!ddddwwwwwwwwwwwwwwdddd2	chr2:21234494-21234764(-)$1	270	63	89	23.1626
dddd[cccuuuuuuuuuuuucccddd	chr3:184043434-184043646(+)$1	212	157	183	24.0644
ccceeeeeuuuuuuuuuuuueeeee2	chr2:21235115-21235340(-)$1	225	157	183	24.2631
eeee!!bbtttttttttttbb22eee	chr2:216248012-216248246(-)$1	234	166	192	22.2259
egggggggtttttttttttggggggg	chr17:8076721-8076924(-)$1	203	114	140	23.3047
eee!!ddddtttttttttttdddd]e	chr9:136217248-136217480(+)$1	232	116	142	22.4555
c::eeeeevvvvvvvvvvvvveeeee	chr18:47340690-47340898(+)$1	208	115	141	22.3691
d!!a[cccvvvvvvvvvvvvvccc]a	chr4:74280704-74280919(+)$1	215	107	133	24.6832
gggg[ddddtttttttttttdddd]g	chr9:136217652-136217868(+)$1	216	158	184	22.7695
========uuuuuuuuuuuu======	chr17:2232335-2232546(-)$1	211	13	39	25.5363
hhhhhhhhuuuuuuuuuuuuhhhhhh	chr1:45243455-45243670(+)$1	215	35	61	21.9058
=====ddddtttttttttttdddd99	chr1:93306305-93306508(+)$1	203	148	174	21.2472
%%eeeeewwwwwwwwwwwwwweeeee	chr17:16343302-16343521(+)$1	219	167	193	22.2243
ee!!cccwwwwwwwwwwwwwwccc22	chr18:51748613-51748837(-)$1	224	181	207	23.2114
"gggggggtttttttttttggggggg	chr1:76252673-76252888(+)$1	215	113	139	23.4099
CCeeeeewwwwwwwwwwwwwweeeee	chr2:216272992-216273231(-)$1	239	186	212	21.2537
========uuuuuuuuuuuu======	chr1:109642901-109643102(+)$1	201	25	51	25.5363
::ffffffuuuuuuuuuuuuffffff	chr2:21228165-21228390(-)$1	225	81	107	21.3539
dddd!!bbtttttttttttbb22ddd	chr20:60928224-60928530(-)$1	306	233	259	21.6207
d!!a[cccvvvvvvvvvvvvvccc]a	chr4:74280719-74280980(+)$1	261	92	118	24.6832
ee[ddddwwwwwwwwwwwwwwdddd]	chr14:95999620-95999824(-)$1	204	153	179	23.1258
iiiiiiiiuuuuuuuuuuuuiiiiii	chr1:15868593-15868894(+)$1	301	81	107	25.0809
hhhhh[bbuuuuuuuuuuuubbhhhh	chr20:2637220-2637440(+)$1	220	133	159	22.4276
iiii[ccctttttttttttccc]iii	chr5:111497211-111497415(+)$1	204	83	109	23.9169

#otherMatches

#Seq PSSM
UUGAGUAUUUUUUUACAAUGUUGCUG	chr14:95999613-95999814(-)$1	201	143	169	23.1258
UGGGUGCCUUUAUUUGUUACCUGGCA	chr16:30721798-30722008(+)$1	210	39	65	23.5242
GGCAUAGAUAGCAUUCCUUUUUUAAG	chr2:216292953-216293158(-)$1	205	10	36	23.9084
AACAUUCACCAUCUUUCGUUUGAGUC	chr19:49993159-49993376(+)$1	217	78	104	20.4815
AUAAUUUCCUUAACAUAAUUUCAAUU	chr7:98479387-98479605(+)$1	218	157	183	21.6193
UUCUCUCCCCUCUUUUCAAAUGAGAA	chr1:173835364-173835588(-)$1	224	4	30	21.3844
CGCGCUUGGAGCGUGUUAGGCGAGUG	chr1:109642861-109643071(+)$1	210	65	91	25.5363
UCUAAAGUUGAUUAUUACUACUUUAG	chr1:76252697-76252922(+)$1	225	89	115	23.4099
auccuggcuuuAAUUUAUAUGCCUUU	chr2:207026546-207026765(+)$1	219	17	43	24.5295
UUGGGCAAAAUUUCUAAACCGUUGUU	chr4:119200332-119200542(+)$1	210	173	199	25.3728
CGCGCUUGGAGCGUGUUAGGCGAGUG	chr1:109642872-109643091(+)$1	219	54	80	25.5363
CUGGAUCACUAAAUUCCCAUGGUCUU	chr2:21234713-21234936(-)$1	223	43	69	22.1560
GCUCCCUCUACUGAACUGCCAUGAGG	chr6:133137883-133138089(+)$1	206	77	103	22.5044
cgaccugguauugcaguacuuccagg	chr11:62609020-62609227(-)$1	207	96	122	24.2894
UUGAGUAUUUUUUUACAAUGUUGCUG	chr14:95999606-95999808(-)$1	202	137	163	23.1258
GACUUUUAUAUUGAAACUUUUAAAUG	chr11:9450216-9450472(+)$1	256	17	43	23.5970
GACCUCUGAUUGAAAAUCCCCCAGGG	chr2:234197442-234197649(+)$1	207	140	166	25.3728
GGGUGGACCUCUUUCUUAAUGUCCAA	chr3:186504472-186504697(+)$1	225	111	137	24.1503
CAGGGGACAACUUCUUAACACGUUCC	chr22:39711139-39711348(-)$1	209	165	191	22.7604
GACCUGCUUUCCUACAAUGUGCAAGG	chr2:21236022-21236249(-)$1	227	193	219	21.8634
CUUGUUUGGCUUACUGAUAACAGAUA	chr11:122929556-122929776(-)$1	220	28	54	24.7782
AGUUGUCAAUUUCUCCUUCAGACAAU	chr2:216256360-216256613(-)$1	253	217	243	22.0787
AUCUGGGAGUCUUCCUUAUACCCAGA	chr2:21237327-21237561(-)$1	234	122	148	22.9469
AAGAAACCAUAAAAAAGAAAAGGAAA	chr2:234184521-234184725(+)$1	204	138	164	23.2277
UUUAUCGCGUAUUCGUACUGGCUGAU	chr19:12817193-12817432(-)$1	239	140	166	23.7933
GGGAUUCCAUCUGCCAUCUCGAGAGU	chr2:21236142-21236379(-)$1	237	109	135	25.1209
GUUUUCCUUCGCUGGUAUCUGGGAGA	chr9:139621099-139621319(-)$1	220	142	168	24.9399
acguuggaaauaaagcugggccucgu	chr1:28833974-28834180(+)$1	206	4	30	23.4777
uaaucaggacuugcaacacccugauu	chr17:8076761-8076969(-)$1	208	159	185	23.3047
GGGUGGACCUCUUUCUUAAUGUCCAA	chr3:186504539-186504740(+)$1	201	44	70	24.1503
UGUUUACUGAGCAUGAUGAAGUAAAG	chr15:25230183-25230414(+)$1	231	80	106	22.9433
GGGGCCCAGAGAGAUGCAUGGGGCCC	chr3:195791077-195791303(-)$1	226	21	47	24.6198
UAUCUUCACUCAGGGCACCAUGAGGA	chr14:20791293-20791500(-)$1	207	87	113	25.5363
ACGACGUCUAAUGUCUAUCUGACCGC	chr17:16342724-16342955(+)$1	231	142	168	23.6132
GGGGGAGGUGUACUGGUAAUGAUCCC	chr3:48642380-48642631(-)$1	251	102	128	21.6580
UGCUAGGAUUUAUUCAUUAUUCCAGU	chr3:184043425-184043634(+)$1	209	166	192	24.0644
UGGCCCAGAAAGAAGAUGAGGAggcc	chr19:5140309-5140588(+)$1	279	133	159	23.2871
CCCCAGUCUGAUCAAUGUGUGACUGA	chr11:62620720-62620926(-)$1	206	84	110	24.6273
CAUCUAUGAAAUUAACAACAAAUGGC	chr2:21234494-21234764(-)$1	270	63	89	23.1626
UGCUAGGAUUUAUUCAUUAUUCCAGU	chr3:184043434-184043646(+)$1	212	157	183	24.0644
CCUGAGGUUUAACUCCUCCUACCUCC	chr2:21235115-21235340(-)$1	225	157	183	24.2631
GACCAACAAAAACUAAAACUGCAGGU	chr2:216248012-216248246(-)$1	234	166	192	22.2259
uaaucaggacuugcaacacccugauu	chr17:8076721-8076924(-)$1	203	114	140	23.3047
CUUUUUAACCCUGAGCAAUUGUUACA	chr9:136217248-136217480(+)$1	232	116	142	22.4555
UGAGGCCGGGCAAGCAGGAGGCGGCC	chr18:47340690-47340898(+)$1	208	115	141	22.3691
UGCCAAGACAUAUGAAACCACUCUAG	chr4:74280704-74280919(+)$1	215	107	133	24.6832
AAACUAAGGCAAAAAACCCACUUUUG	chr9:136217652-136217868(+)$1	216	158	184	22.7695
GGUUAGAGGUAUUUUCAGUACUCUGG	chr17:2232335-2232546(-)$1	211	13	39	25.5363
GGGAGGGCAGCCUGACUCCAGCCUUC	chr1:45243455-45243670(+)$1	215	35	61	21.9058
UUGUUGAUCUUUCAUGUUUUGAUCUU	chr1:93306305-93306508(+)$1	203	148	174	21.2472
ACGGUGACCUAAUUGCUAUAUUCACC	chr17:16343302-16343521(+)$1	219	167	193	22.2243
AUUUCUUCUGAUUAAAAAAAAAGGUU	chr18:51748613-51748837(-)$1	224	181	207	23.2114
UCUAAAGUUGAUUAUUACUACUUUAG	chr1:76252673-76252888(+)$1	215	113	139	23.4099
AUCCUGUCUACUUCACAAACAACAGG	chr2:216272992-216273231(-)$1	239	186	212	21.2537
CGCGCUUGGAGCGUGUUAGGCGAGUG	chr1:109642901-109643102(+)$1	201	25	51	25.5363
UUUGAGAUAACCGUGCCUGAAUCUCA	chr2:21228165-21228390(-)$1	225	81	107	21.3539
UGGCCUACGUCCUCAUCAAGUUUGCC	chr20:60928224-60928530(-)$1	306	233	259	21.6207
UGCCAAGACAUAUGAAACCACUCUAG	chr4:74280719-74280980(+)$1	261	92	118	24.6832
UUGAGUAUUUUUUUACAAUGUUGCUG	chr14:95999620-95999824(-)$1	204	153	179	23.1258
GGGGGUGGGCUCAGUCUACACCACCU	chr1:15868593-15868894(+)$1	301	81	107	25.0809
GGGAACACAGGGUUGGGGUAGUUUCU	chr20:2637220-2637440(+)$1	220	133	159	22.4276
GAGCUGCAUAAGUAACAGUUGCUGCU	chr5:111497211-111497415(+)$1	204	83	109	23.9169

#DB
((.((((..............)))).	chr14:95999613-95999814(-)$1	1	143	169	23.1258
.(((((((..............))))	chr16:30721798-30722008(+)$1	1	39	65	23.5242
(((.((((............)))).)	chr2:216292953-216293158(-)$1	1	10	36	23.9084
...(((((............))))).	chr19:49993159-49993376(+)$1	1	78	104	20.4815
.(((((................))))	chr7:98479387-98479605(+)$1	1	157	183	21.6193
(((((................)))))	chr1:173835364-173835588(-)$1	1	4	30	21.3844
((((((((............))))))	chr1:109642861-109643071(+)$1	1	65	91	25.5363
.(((((((...........)))))))	chr1:76252697-76252922(+)$1	1	89	115	23.4099
(....(((............)))...	chr2:207026546-207026765(+)$1	1	17	43	24.5295
((((((((.............)))))	chr4:119200332-119200542(+)$1	1	173	199	25.3728
((((((((............))))))	chr1:109642872-109643091(+)$1	1	54	80	25.5363
(.((((((...........)))))).	chr2:21234713-21234936(-)$1	1	43	69	22.1560
((..((((..............))))	chr6:133137883-133138089(+)$1	1	77	103	22.5044
((.(((((.............)))))	chr11:62609020-62609227(-)$1	1	96	122	24.2894
((.((((..............)))).	chr14:95999606-95999808(-)$1	1	137	163	23.1258
(((.((((............)))).)	chr11:9450216-9450472(+)$1	1	17	43	23.5970
((((((((.............)))))	chr2:234197442-234197649(+)$1	1	140	166	25.3728
((((((((............))))).	chr3:186504472-186504697(+)$1	1	111	137	24.1503
(((((.((.............)))))	chr22:39711139-39711348(-)$1	1	165	191	22.7604
.((((((.............)).)))	chr2:21236022-21236249(-)$1	1	193	219	21.8634
((((((((............))))).	chr11:122929556-122929776(-)$1	1	28	54	24.7782
.((((((.............))))))	chr2:216256360-216256613(-)$1	1	217	243	22.0787
)((((((.............))))))	chr2:21237327-21237561(-)$1	1	122	148	22.9469
((....((.............))...	chr2:234184521-234184725(+)$1	1	138	164	23.2277
...(((((............)).)))	chr19:12817193-12817432(-)$1	1	140	166	23.7933
((((((((............).))))	chr2:21236142-21236379(-)$1	1	109	135	25.1209
.(((((((............))))))	chr9:139621099-139621319(-)$1	1	142	168	24.9399
(((..((.............)).)))	chr1:28833974-28834180(+)$1	1	4	30	23.4777
)(((((((...........)))))))	chr17:8076761-8076969(-)$1	1	159	185	23.3047
((((((((............))))).	chr3:186504539-186504740(+)$1	1	44	70	24.1503
...(((((...........)))))))	chr15:25230183-25230414(+)$1	1	80	106	22.9433
(((((((.............))))))	chr3:195791077-195791303(-)$1	1	21	47	24.6198
((((((((............))))))	chr14:20791293-20791500(-)$1	1	87	113	25.5363
.((..(((............))))))	chr17:16342724-16342955(+)$1	1	142	168	23.6132
.(((((................))))	chr3:48642380-48642631(-)$1	1	102	128	21.6580
((((.(((............))))))	chr3:184043425-184043634(+)$1	1	166	192	24.0644
((((((..............).))))	chr19:5140309-5140588(+)$1	1	133	159	23.2871
...(((((............))))).	chr11:62620720-62620926(-)$1	1	84	110	24.6273
(..((((..............)))).	chr2:21234494-21234764(-)$1	1	63	89	23.1626
((((.(((............))))))	chr3:184043434-184043646(+)$1	1	157	183	24.0644
((((((((............))))).	chr2:21235115-21235340(-)$1	1	157	183	24.2631
((((..((...........))..)))	chr2:216248012-216248246(-)$1	1	166	192	22.2259
)(((((((...........)))))))	chr17:8076721-8076924(-)$1	1	114	140	23.3047
(((..((((...........)))).)	chr9:136217248-136217480(+)$1	1	116	142	22.4555
)..(((((.............)))))	chr18:47340690-47340898(+)$1	1	115	141	22.3691
(..(.(((.............))).)	chr4:74280704-74280919(+)$1	1	107	133	24.6832
((((.((((...........)))).)	chr9:136217652-136217868(+)$1	1	158	184	22.7695
((((((((............))))))	chr17:2232335-2232546(-)$1	1	13	39	25.5363
((((((((............))))))	chr1:45243455-45243670(+)$1	1	35	61	21.9058
(((((((((...........))))..	chr1:93306305-93306508(+)$1	1	148	174	21.2472
..(((((..............)))))	chr17:16343302-16343521(+)$1	1	167	193	22.2243
((..(((..............)))..	chr18:51748613-51748837(-)$1	1	181	207	23.2114
.(((((((...........)))))))	chr1:76252673-76252888(+)$1	1	113	139	23.4099
))(((((..............)))))	chr2:216272992-216273231(-)$1	1	186	212	21.2537
((((((((............))))))	chr1:109642901-109643102(+)$1	1	25	51	25.5363
..((((((............))))))	chr2:21228165-21228390(-)$1	1	81	107	21.3539
((((..((...........))..)))	chr20:60928224-60928530(-)$1	1	233	259	21.6207
(..(.(((.............))).)	chr4:74280719-74280980(+)$1	1	92	118	24.6832
((.((((..............)))).	chr14:95999620-95999824(-)$1	1	153	179	23.1258
((((((((............))))))	chr1:15868593-15868894(+)$1	1	81	107	25.0809
(((((.((............))))))	chr20:2637220-2637440(+)$1	1	133	159	22.4276
((((.(((...........))).)))	chr5:111497211-111497415(+)$1	1	83	109	23.9169

#PSSM
e : 0.16	d : 0.16	= : 0.14	[ : 0.06	: : 0.06	" : 0.06	i : 0.06	c : 0.06	g : 0.06	f : 0.04	# : 0.03	h : 0.03	% : 0.01	C : 0.01	
e : 0.16	g : 0.16	= : 0.12	d : 0.12	f : 0.08	: : 0.04	# : 0.04	i : 0.04	! : 0.04	c : 0.03	h : 0.03	[ : 0.01	" : 0.01	b : 0.01	% : 0.01	C : 0.01	
g : 0.16	e : 0.12	= : 0.12	f : 0.09	d : 0.09	! : 0.08	[ : 0.06	# : 0.06	i : 0.04	: : 0.03	c : 0.03	h : 0.03	" : 0.01	b : 0.01	
e : 0.24	g : 0.16	d : 0.12	= : 0.12	f : 0.08	! : 0.08	[ : 0.03	# : 0.03	a : 0.03	h : 0.03	i : 0.03	c : 0.01	
e : 0.22	g : 0.14	d : 0.12	= : 0.12	[ : 0.09	f : 0.08	! : 0.08	# : 0.03	c : 0.03	h : 0.03	i : 0.01	
e : 0.20	d : 0.16	c : 0.14	g : 0.12	= : 0.11	f : 0.06	[ : 0.03	b : 0.03	! : 0.03	y : 0.01	# : 0.01	a : 0.01	h : 0.01	i : 0.01	
e : 0.17	d : 0.16	g : 0.12	c : 0.12	b : 0.12	= : 0.11	f : 0.06	y : 0.04	w : 0.01	h : 0.01	i : 0.01	
e : 0.14	w : 0.12	= : 0.11	c : 0.11	g : 0.09	d : 0.09	b : 0.09	v : 0.08	y : 0.04	f : 0.03	a : 0.01	h : 0.01	i : 0.01	
u : 0.38	v : 0.20	w : 0.16	t : 0.14	y : 0.04	d : 0.04	
u : 0.38	v : 0.20	t : 0.19	w : 0.16	y : 0.04	
u : 0.38	v : 0.20	t : 0.19	w : 0.16	y : 0.04	
u : 0.38	v : 0.20	t : 0.19	w : 0.16	y : 0.04	
u : 0.38	v : 0.20	t : 0.19	w : 0.16	y : 0.04	
u : 0.38	v : 0.20	t : 0.19	w : 0.16	y : 0.04	
u : 0.38	v : 0.20	t : 0.19	w : 0.16	y : 0.04	
u : 0.38	v : 0.20	t : 0.19	w : 0.16	y : 0.04	
u : 0.38	v : 0.20	t : 0.19	w : 0.16	y : 0.04	
u : 0.38	v : 0.20	t : 0.19	w : 0.16	y : 0.04	
u : 0.38	v : 0.20	t : 0.19	w : 0.16	y : 0.04	
u : 0.38	v : 0.20	w : 0.16	g : 0.06	y : 0.04	t : 0.04	b : 0.03	f : 0.01	e : 0.01	c : 0.01	
w : 0.14	v : 0.12	e : 0.11	g : 0.09	b : 0.09	d : 0.08	= : 0.08	c : 0.08	f : 0.06	y : 0.04	a : 0.03	h : 0.01	i : 0.01	
e : 0.19	d : 0.14	c : 0.12	= : 0.11	g : 0.09	b : 0.09	f : 0.06	w : 0.03	y : 0.03	] : 0.03	2 : 0.03	h : 0.01	i : 0.01	
e : 0.22	d : 0.16	g : 0.14	= : 0.11	c : 0.11	f : 0.06	] : 0.06	b : 0.03	2 : 0.03	h : 0.03	i : 0.01	
e : 0.24	d : 0.22	g : 0.14	= : 0.11	f : 0.08	c : 0.08	3 : 0.03	h : 0.03	i : 0.03	b : 0.01	
e : 0.22	d : 0.14	g : 0.14	= : 0.11	] : 0.09	f : 0.09	3 : 0.03	c : 0.03	h : 0.03	i : 0.03	b : 0.01	9 : 0.01	2 : 0.01	
g : 0.16	e : 0.16	= : 0.11	f : 0.09	] : 0.08	d : 0.08	3 : 0.04	c : 0.04	2 : 0.04	4 : 0.03	a : 0.03	h : 0.03	i : 0.03	: : 0.01	9 : 0.01	

#score	1452.2506496070107
#seq	62
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_transcript_m2_run2.txt

#BEAR
eee!!eeeee"""bbmmmmbb22eeeeeeeee	chr22:50745408-50745633(-)$1	225	135	167	12.3553
eee####eeeeecccmmmmccc]eeeee333e	chr19:956525-956804(+)$1	279	41	73	12.5397
fffff"""accc[bbmmmmbbccc]a4444ff	chr17:75319411-75319741(+)$1	330	202	234	11.8995
cccggggggg!!bboooooobb22ggggggg4	chr16:4661260-4661484(-)$1	224	184	216	12.3909
eee[ccc!!ccc[bbmmmmbb22ccc22ccc]	chr20:62667617-62667863(+)$1	246	117	149	12.7880
:::ggggggg[a[bbmmmmbb333a]gggggg	chr16:4400900-4401300(-)$1	400	220	252	11.7061
ggggg[a[bb[bboooooobbbb]a]gggggg	chr19:1409373-1409613(+)$1	240	138	170	10.3381
hhhhh==========mmmm==========000	chr22:50740108-50740361(-)$1	253	8	40	11.6808
eeeee[a[ccc[cccmmmmccc]ccc22a]ee	chr17:80190016-80190277(+)$1	261	84	116	12.9503
fff!!ffffff[cccmmmmccc]fffffffff	chr22:50872224-50872469(+)$1	245	56	88	12.1954
d"""iiiiiiiiibbmmmmbb333iiiiiiii	chr17:79962838-79963060(+)$1	222	30	62	15.1016
:ggggggg!!bbcccmmmmccc]bbggggggg	chr16:591049-591314(+)$1	265	87	119	11.9117
$$$iiiiiiiii[bboooooobb]iiiiiiii	chr16:87378318-87378594(-)$1	276	16	48	11.2671
ccc[ffffffa[cccmmmmccc]a]ffffffc	chr1:2229286-2229544(+)$1	258	102	134	12.7494
!eeeee[gggggggooooooggggggg]eeee	chr19:576962-577228(+)$1	266	115	147	10.5903
====hhhhhhhh[bbmmmmbb]hhhhhhhh44	chr2:240321769-240322060(-)$1	291	116	148	10.9363
eee$$$$$ccc[cccmmmmcccccc22eeeee	chr12:133370907-133371146(-)$1	239	172	204	11.4534
:ggggggga[eeeeemmmmeeeee]a]ggggg	chr2:241906225-241906498(-)$1	273	206	238	9.7198
dddd!!dddd[bbbbmmmmbb]bb]dddd333	chr20:62526720-62527004(+)$1	284	183	215	10.8498
cc[============lll============]c	chr22:50873221-50873491(+)$1	270	154	186	12.7514
ddd[dddd[ccccccmmmmccc333ccc]ddd	chr20:62580889-62581142(-)$1	253	89	121	12.3221
:==========[bboooooobb]=========	chr7:5462009-5462251(-)$1	242	11	43	12.4431
iiiiiiii[ccc[bbmmmmbbccc]iiiiiii	chr17:59474511-59474763(-)$1	252	59	91	13.9003
$$$$eeeee!!cccooooooccc]eeeee444	chr1:44031310-44031620(+)$1	310	81	113	10.1921
fff####dddd[cccmmmmccc]dddd22fff	chr9:137249688-137249930(+)$1	242	10	42	11.3271
ccc[hhhhhhhhcccmmmmccc4444hhhhhh	chr9:138972686-138972933(-)$1	247	183	215	11.5797
fffff[eeeee!!bbmmmmbb]eeeee]ffff	chr19:35491138-35491399(+)$1	261	116	148	11.4506
ccc"""eeeee[cccmmmmccc22eeeee22c	chr16:88577288-88577533(+)$1	245	150	182	12.7429
dd"""ffffff[cccmmmmcccffffff4444	chr11:853510-853765(+)$1	255	138	170	12.0900
eeeeffffff[cccooooooccc]ffffff]e	chr8:144679194-144679447(-)$1	253	157	189	10.3138
eeeegggggggbbbbmmmmbb]bb]ggggggg	chr16:88877710-88877972(-)$1	262	14	46	12.4752
ccc==========[ammmma]==========2	chr11:1595883-1596162(+)$1	279	104	136	13.8139
"""bb[a[ccc!!bbmmmmbb22ccc22a]bb	chr19:4063670-4063944(-)$1	274	135	167	12.0628
ddd[ffffff[a[bbmmmmbb]a]ffffff22	chr11:851146-851389(+)$1	243	44	76	11.8937
b[bb[dddd"""cccmmmmccc333ddddbb]	chr14:105255327-105255559(-)$1	232	140	172	11.5385
c!!eeeee!!bb[bbmmmmbb]bb22eeeee]	chr16:88846382-88846639(-)$1	257	12	44	11.1598
ddd:ggggggg[bboooooobb]gggggggee	chr2:219263854-219264105(+)$1	251	106	138	10.7503
eee[ccc[ccc!!bbmmmmbb4444ccc]ccc	chr7:5459796-5460043(-)$1	247	30	62	13.7243
ddd[a!!eeeee[bbmmmmbb333eeeee]ad	chr13:103453021-103453268(+)$1	247	11	43	12.9773
ffff[iiiiiiiiiammmma]iiiiiiiii]f	chr22:41488086-41488355(+)$1	269	159	191	12.9790
a[a[a[dddd!!cccmmmmccc22dddd]a]a	chr17:80190700-80190970(+)$1	270	147	179	12.6895
eeeee[iiiiiiiiimmmmiiiiiiiiieeee	chr17:79877701-79877942(-)$1	241	208	240	12.6509
Giiiiiiiii!!bboooooobb22iiiiiiii	chr6:139013962-139014254(+)$1	292	62	94	12.2356
####bb!!gggggggaooooooa]ggggggg4	chr8:144679309-144679553(-)$1	244	57	89	10.1072
bb[dddd[ccc[cccmmmmccc]ccc]dddd]	chr17:7211174-7211424(+)$1	250	87	119	11.7135
eeee:gggggggccclllccc333ggggggg:	chr8:144887815-144888082(-)$1	267	126	158	10.2798
gggggeeeee!!cccmmmmccc22eeeee:cc	chr17:48542230-48542508(+)$1	278	131	163	11.8167
eeee===========mmmm===========33	chr19:4061229-4061487(-)$1	258	117	149	14.2856
iiiiiii!!bb[cccmmmmccc]bb]iiiiii	chr17:7477337-7477582(+)$1	245	174	206	13.3208
ddd!!ffffff[cccmmmmccc333ffffff2	chr16:586708-586945(+)$1	237	128	160	13.0851
f[bb!!ccc[a[cccmmmmccc]a22ccc]bb	chr16:75284644-75284909(-)$1	265	76	108	12.2728
ggggbb!!a[cccooooooccc]a22bb]ggg	chr5:899829-900082(+)$1	253	200	232	10.3963
b"""bb[gggggggooooooggggggg]bb]b	chr1:2162578-2162801(+)$1	223	55	87	10.0590
gg!!ccc[ccc[cccmmmmccc666666ccc]	chr20:62682561-62682832(+)$1	271	140	172	10.8199

#otherMatches

#Seq PSSM
ACUGCCUGGGCCUCCUCGCGGUUCCCAGAGUG	chr22:50745408-50745633(-)$1	225	135	167	12.3553
CCCCACACCCCUCAGGCAGCUGAAGGGGAAAG	chr19:956525-956804(+)$1	279	41	73	12.5397
GGGGCUUGGCCACGCUGUCGCUGGACGUCUGU	chr17:75319411-75319741(+)$1	330	202	234	11.8995
GGGAGGCUCAGGUGGGGAAGCGAGUGAGCCUA	chr16:4661260-4661484(-)$1	224	184	216	12.3909
GGGUACACACAGCUCAGGAGACACUGCUUGUU	chr20:62667617-62667863(+)$1	246	117	149	12.7880
AUCGAGGCCGGCAGCGGCGGCACCGGCGGCCU	chr16:4400900-4401300(-)$1	400	220	252	11.7061
GGAGAACUGGAGUGCAUGGACCCUGCUCUCCU	chr19:1409373-1409613(+)$1	240	138	170	10.3381
GUGUCUGCACAUGUGUGGUCAUGUGUGCAAGU	chr22:50740108-50740361(-)$1	253	8	40	11.6808
GGGCUGGAGUCAGUUAGGUAACAGGCCACGGG	chr17:80190016-80190277(+)$1	261	84	116	12.9503
GCAUGGAUGCUGGGCAGGGGCCGGGCAUUUGC	chr22:50872224-50872469(+)$1	245	56	88	12.1954
UCUGGGCCUCUUUGCAUCGGCUCAGGGGAGGC	chr17:79962838-79963060(+)$1	222	30	62	15.1016
UGUCUGUUGGCCCCCAGGUGGGAGGGACGGGC	chr16:591049-591314(+)$1	265	87	119	11.9117
GGGCUCUGCCCCCAGGUGGGGUUUGGGGCAGG	chr16:87378318-87378594(-)$1	276	16	48	11.2671
GCUGUGUGGCAGGCCUUGGGGUGUAGCCGCAA	chr1:2229286-2229544(+)$1	258	102	134	12.7494
GGCUGUUCCUGGCAGGCGAGUGCUAGGCACAG	chr19:576962-577228(+)$1	266	115	147	10.5903
CCCCGCGCUUGUCGUCGCCGCUGCGAGCGCCC	chr2:240321769-240322060(-)$1	291	116	148	10.9363
GCCUUGUCGGAAUGUGCACACAUCCCCGGCCA	chr12:133370907-133371146(-)$1	239	172	204	11.4534
GUCCUGCCCACUGGAGUCAUCCAGCGAGGUGG	chr2:241906225-241906498(-)$1	273	206	238	9.7198
ggccgggccgggGGUCUGAGCACCGUGGUGGG	chr20:62526720-62527004(+)$1	284	183	215	10.8498
UGGUGCCUGUUGCUUUCAGGGCAGCGGGUGGC	chr22:50873221-50873491(+)$1	270	154	186	12.7514
GCAUAGAGGGGAGGGGCCGCCUGGAUUUGUUC	chr20:62580889-62581142(-)$1	253	89	121	12.3221
CGGGAGCCGGUGGCUUUGGCGUGAUCGGCUUC	chr7:5462009-5462251(-)$1	242	11	43	12.4431
gccccggggggcgccucgcgggccgcccgggg	chr17:59474511-59474763(-)$1	252	59	91	13.9003
AAGCGGGAAAGCCUAGUGGGAGGAUUCCCUGG	chr1:44031310-44031620(+)$1	310	81	113	10.1921
UCACACUGUCUGAUCCUAGGGUGAGGCCAUGG	chr9:137249688-137249930(+)$1	242	10	42	11.3271
GGCACCCUAGCACGCAGGGGCGGCUCUGCUGG	chr9:138972686-138972933(-)$1	247	183	215	11.5797
GGGCGGCGGCCGCGGAAGGCCAGGCCGGUGCC	chr19:35491138-35491399(+)$1	261	116	148	11.4506
UGGCCGGAGCUGGCAUCUCUGCUGGGCUCACC	chr16:88577288-88577533(+)$1	245	150	182	12.7429
GGUGGUGGGGGACCCGGUGGGGCCUUCAGAGU	chr11:853510-853765(+)$1	255	138	170	12.0900
GGGGGCGCCGGGAGCACUGUCUCACGGCGCAU	chr8:144679194-144679447(-)$1	253	157	189	10.3138
GGCGAGUGCCCAGUGGCCGCAUCUAGGGCGCU	chr16:88877710-88877972(-)$1	262	14	46	12.4752
GCAGCCUGGGGCGGGGACGCGCGCUCCGGGCC	chr11:1595883-1596162(+)$1	279	104	136	13.8139
AGAGAGCGGCCCAAGGUCACUCAGGUGGGGUC	chr19:4063670-4063944(-)$1	274	135	167	12.0628
UGUCCUGUCCCUGGCUCCUGUGGAGGGCAGCU	chr11:851146-851389(+)$1	243	44	76	11.8937
UGUGACCCAGCAGGCCAAGGCCGAGUGGGCGG	chr14:105255327-105255559(-)$1	232	140	172	11.5385
GAAGGCUUCUCCUCUCCUUGGCGGUUGAGUCC	chr16:88846382-88846639(-)$1	257	12	44	11.1598
CGUGGGGAGAGGUCGGCAGGGGGCUUUCCCAG	chr2:219263854-219264105(+)$1	251	106	138	10.7503
CGGAGGUGCGGCAGGGACACCGAAACCGGACC	chr7:5459796-5460043(-)$1	247	30	62	13.7243
AGGACUCCCGGUAUCUUUUGACAGGCUGGCGC	chr13:103453021-103453268(+)$1	247	11	43	12.9773
ccggagcggggccuccucggugggcuccgcgu	chr22:41488086-41488355(+)$1	269	159	191	12.9790
GGAGAGGCCAAUGCUUGGUGGCUGUGGCGUGU	chr17:80190700-80190970(+)$1	270	147	179	12.6895
GGGGCGACUUCCCUGGGUCUAGGGGAGUGUUC	chr17:79877701-79877942(-)$1	241	208	240	12.6509
CCCUGCCCGCAGGGGAGAGGCcgggcgggcag	chr6:139013962-139014254(+)$1	292	62	94	12.2356
GGAAGGAGUCGGGCGCGACAGAGACGCCCGAG	chr8:144679309-144679553(-)$1	244	57	89	10.1072
UUGGCCCGGUGACGUUGGAGCGACGCAGGGCG	chr17:7211174-7211424(+)$1	250	87	119	11.7135
AGUAACCCAGCGACCUUAGGUGUGUGUUGGGC	chr8:144887815-144888082(-)$1	267	126	158	10.2798
UCUCCGGUGGAAGGCAGAGGCCAGUCACCAGG	chr17:48542230-48542508(+)$1	278	131	163	11.8167
CGGGGGCUGCCGGGUGCGGGCCUGGCAGCCGC	chr19:4061229-4061487(-)$1	258	117	149	14.2856
CCGGCUGUCAGGAUUUCUGAGUGCUUCGGUCG	chr17:7477337-7477582(+)$1	245	174	206	13.3208
AUUUCGGGAAGAGCAUCGGUGCCAGUUUCCCA	chr16:586708-586945(+)$1	237	128	160	13.0851
CGGCCGCCGGCGCGGGGUUCCGGGAGCGGAGC	chr16:75284644-75284909(-)$1	265	76	108	12.2728
UCAGUCAGUGUGUGGGGAAACAGGUGGAUUUG	chr5:899829-900082(+)$1	253	200	232	10.3963
CAGUGCCUGUGGCUGGAGGAAGCCACAUGUCG	chr1:2162578-2162801(+)$1	223	55	87	10.0590
GCCGUGCGAAGACCCCAAAGGGCUACCACUUG	chr20:62682561-62682832(+)$1	271	140	172	10.8199

#DB
(((..(((((...((....))..)))))))))	chr22:50745408-50745633(-)$1	1	135	167	12.3553
(((....((((((((....))).)))))...)	chr19:956525-956804(+)$1	1	41	73	12.5397
(((((...((((.((....))))).)....))	chr17:75319411-75319741(+)$1	1	202	234	11.8995
((((((((((..((......))..))))))).	chr16:4661260-4661484(-)$1	1	184	216	12.3909
(((.(((..(((.((....))..)))..))).	chr20:62667617-62667863(+)$1	1	117	149	12.7880
...(((((((.(.((....))...).))))))	chr16:4400900-4401300(-)$1	1	220	252	11.7061
(((((.(.((.((......)))).).))))))	chr19:1409373-1409613(+)$1	1	138	170	10.3381
(((((((((((((((....))))))))))...	chr22:50740108-50740361(-)$1	1	8	40	11.6808
(((((.(.(((.(((....))).)))..).))	chr17:80190016-80190277(+)$1	1	84	116	12.9503
(((..((((((.(((....))).)))))))))	chr22:50872224-50872469(+)$1	1	56	88	12.1954
(...(((((((((((....))...))))))))	chr17:79962838-79963060(+)$1	1	30	62	15.1016
.(((((((..(((((....))).)))))))))	chr16:591049-591314(+)$1	1	87	119	11.9117
...(((((((((.((......)).))))))))	chr16:87378318-87378594(-)$1	1	16	48	11.2671
(((.(((((((.(((....))).).)))))))	chr1:2229286-2229544(+)$1	1	102	134	12.7494
.(((((.(((((((......))))))).))))	chr19:576962-577228(+)$1	1	115	147	10.5903
((((((((((((.((....)).))))))))..	chr2:240321769-240322060(-)$1	1	116	148	10.9363
(((.....(((.(((....))))))..)))))	chr12:133370907-133371146(-)$1	1	172	204	11.4534
.((((((((.(((((....))))).).)))))	chr2:241906225-241906498(-)$1	1	206	238	9.7198
((((..((((.((((....)).)).))))...	chr20:62526720-62527004(+)$1	1	183	215	10.8498
((.((((((((((((...)))))))))))).)	chr22:50873221-50873491(+)$1	1	154	186	12.7514
(((.((((.((((((....)))...))).)))	chr20:62580889-62581142(-)$1	1	89	121	12.3221
.((((((((((.((......)).)))))))))	chr7:5462009-5462251(-)$1	1	11	43	12.4431
((((((((.(((.((....))))).)))))))	chr17:59474511-59474763(-)$1	1	59	91	13.9003
....(((((..(((......))).)))))...	chr1:44031310-44031620(+)$1	1	81	113	10.1921
(((....((((.(((....))).))))..)))	chr9:137249688-137249930(+)$1	1	10	42	11.3271
(((.(((((((((((....)))....))))))	chr9:138972686-138972933(-)$1	1	183	215	11.5797
(((((.(((((..((....)).))))).))))	chr19:35491138-35491399(+)$1	1	116	148	11.4506
(((...(((((.(((....)))..)))))..)	chr16:88577288-88577533(+)$1	1	150	182	12.7429
((...((((((.(((....)))))))))....	chr11:853510-853765(+)$1	1	138	170	12.0900
((((((((((.(((......))).)))))).)	chr8:144679194-144679447(-)$1	1	157	189	10.3138
(((((((((((((((....)).)).)))))))	chr16:88877710-88877972(-)$1	1	14	46	12.4752
(((((((((((((.(....).)))))))))).	chr11:1595883-1596162(+)$1	1	104	136	13.8139
...((.(.(((..((....))..)))..).))	chr19:4063670-4063944(-)$1	1	135	167	12.0628
(((.((((((.(.((....)).).))))))..	chr11:851146-851389(+)$1	1	44	76	11.8937
(.((.((((...(((....)))...)))))).	chr14:105255327-105255559(-)$1	1	140	172	11.5385
(..(((((..((.((....)).))..))))).	chr16:88846382-88846639(-)$1	1	12	44	11.1598
))).(((((((.((......)).)))))))((	chr2:219263854-219264105(+)$1	1	106	138	10.7503
(((.(((.(((..((....))....))).)))	chr7:5459796-5460043(-)$1	1	30	62	13.7243
(((.(..(((((.((....))...))))).))	chr13:103453021-103453268(+)$1	1	11	43	12.9773
((((.((((((((((....).))))))))).)	chr22:41488086-41488355(+)$1	1	159	191	12.9790
(.(.(.((((..(((....)))..)))).).)	chr17:80190700-80190970(+)$1	1	147	179	12.6895
(((((.(((((((((....)))))))))))))	chr17:79877701-79877942(-)$1	1	208	240	12.6509
((((((((((..((......))..))))))))	chr6:139013962-139014254(+)$1	1	62	94	12.2356
....((..((((((((......).))))))).	chr8:144679309-144679553(-)$1	1	57	89	10.1072
((.((((.(((.(((....))).))).)))).	chr17:7211174-7211424(+)$1	1	87	119	11.7135
)))).((((((((((...)))...))))))).	chr8:144887815-144888082(-)$1	1	126	158	10.2798
)))))(((((..(((....)))..))))).((	chr17:48542230-48542508(+)$1	1	131	163	11.8167
(((((((((((((((....)))))))))))..	chr19:4061229-4061487(-)$1	1	117	149	14.2856
(((((((..((.(((....))).)).))))))	chr17:7477337-7477582(+)$1	1	174	206	13.3208
(((..((((((.(((....)))...)))))).	chr16:586708-586945(+)$1	1	128	160	13.0851
(.((..(((.(.(((....))).)..))).))	chr16:75284644-75284909(-)$1	1	76	108	12.2728
((((((..(.(((......))).)..)).)))	chr5:899829-900082(+)$1	1	200	232	10.3963
(...((.(((((((......))))))).)).)	chr1:2162578-2162801(+)$1	1	55	87	10.0590
((..(((.(((.(((....)))......))).	chr20:62682561-62682832(+)$1	1	140	172	10.8199

#PSSM
e : 0.20	d : 0.14	c : 0.12	f : 0.11	: : 0.07	g : 0.07	b : 0.05	$ : 0.03	i : 0.03	h : 0.01	! : 0.01	= : 0.01	" : 0.01	a : 0.01	G : 0.01	# : 0.01	
e : 0.22	d : 0.12	c : 0.11	g : 0.11	f : 0.09	" : 0.05	i : 0.05	[ : 0.05	$ : 0.03	= : 0.03	: : 0.01	h : 0.01	! : 0.01	# : 0.01	b : 0.01	
e : 0.22	d : 0.11	f : 0.09	c : 0.09	g : 0.09	" : 0.07	i : 0.05	$ : 0.03	= : 0.03	[ : 0.03	b : 0.03	! : 0.03	: : 0.01	h : 0.01	a : 0.01	# : 0.01	
[ : 0.14	e : 0.14	g : 0.12	! : 0.07	" : 0.07	i : 0.07	= : 0.07	# : 0.05	f : 0.05	b : 0.05	$ : 0.03	d : 0.03	h : 0.01	: : 0.01	
g : 0.14	! : 0.09	f : 0.09	e : 0.09	i : 0.09	= : 0.07	b : 0.07	c : 0.05	h : 0.05	# : 0.03	d : 0.03	" : 0.03	[ : 0.03	a : 0.03	$ : 0.01	: : 0.01	
g : 0.12	[ : 0.11	f : 0.11	i : 0.11	e : 0.09	= : 0.09	c : 0.05	! : 0.05	d : 0.05	b : 0.05	# : 0.03	" : 0.03	h : 0.03	$ : 0.01	
g : 0.12	i : 0.12	e : 0.11	f : 0.11	= : 0.09	d : 0.09	c : 0.07	a : 0.05	! : 0.05	# : 0.03	[ : 0.03	h : 0.03	" : 0.01	$ : 0.01	
g : 0.16	e : 0.14	[ : 0.11	f : 0.11	i : 0.11	= : 0.09	d : 0.09	! : 0.07	h : 0.03	" : 0.01	$ : 0.01	c : 0.01	
g : 0.14	e : 0.12	c : 0.12	f : 0.11	= : 0.09	i : 0.09	! : 0.07	d : 0.07	a : 0.05	h : 0.03	[ : 0.03	b : 0.01	
c : 0.18	g : 0.14	e : 0.11	f : 0.11	= : 0.09	i : 0.09	! : 0.05	[ : 0.05	d : 0.05	b : 0.03	h : 0.03	" : 0.01	
c : 0.20	g : 0.11	e : 0.09	! : 0.09	[ : 0.09	= : 0.09	i : 0.07	f : 0.05	b : 0.05	" : 0.03	a : 0.03	h : 0.03	d : 0.01	
[ : 0.25	c : 0.12	! : 0.12	b : 0.09	= : 0.07	i : 0.07	g : 0.07	e : 0.05	" : 0.03	a : 0.03	h : 0.03	
c : 0.42	[ : 0.16	b : 0.12	= : 0.07	i : 0.05	g : 0.05	! : 0.05	" : 0.01	e : 0.01	
c : 0.40	b : 0.37	= : 0.05	g : 0.05	o : 0.03	i : 0.03	e : 0.01	[ : 0.01	
c : 0.37	b : 0.29	o : 0.18	= : 0.05	a : 0.03	e : 0.01	i : 0.01	g : 0.01	
m : 0.74	o : 0.20	l : 0.03	a : 0.01	
m : 0.74	o : 0.22	l : 0.03	
m : 0.74	o : 0.22	l : 0.03	
m : 0.74	o : 0.22	= : 0.01	c : 0.01	
c : 0.38	b : 0.29	o : 0.18	= : 0.05	a : 0.03	e : 0.01	i : 0.01	
c : 0.42	b : 0.37	= : 0.05	o : 0.03	g : 0.03	] : 0.03	e : 0.01	i : 0.01	
c : 0.44	b : 0.11	] : 0.11	3 : 0.07	= : 0.07	2 : 0.05	g : 0.03	i : 0.03	e : 0.01	4 : 0.01	o : 0.01	
] : 0.22	2 : 0.14	3 : 0.12	c : 0.09	b : 0.09	= : 0.07	g : 0.03	e : 0.03	4 : 0.03	a : 0.03	i : 0.03	h : 0.01	f : 0.01	6 : 0.01	
c : 0.12	3 : 0.12	] : 0.11	2 : 0.09	= : 0.09	b : 0.09	e : 0.07	a : 0.05	g : 0.05	f : 0.03	4 : 0.03	i : 0.03	h : 0.01	d : 0.01	6 : 0.01	
e : 0.12	] : 0.11	g : 0.11	c : 0.09	= : 0.09	i : 0.09	f : 0.07	3 : 0.05	2 : 0.05	a : 0.03	b : 0.03	d : 0.03	4 : 0.03	h : 0.01	6 : 0.01	
g : 0.14	e : 0.12	c : 0.11	f : 0.11	i : 0.11	= : 0.09	2 : 0.07	d : 0.07	] : 0.05	a : 0.03	h : 0.01	4 : 0.01	6 : 0.01	
g : 0.18	e : 0.14	i : 0.12	f : 0.11	= : 0.09	2 : 0.07	d : 0.07	c : 0.05	h : 0.03	] : 0.03	4 : 0.01	b : 0.01	6 : 0.01	
g : 0.16	e : 0.14	i : 0.12	f : 0.11	= : 0.09	2 : 0.07	d : 0.07	] : 0.05	c : 0.05	h : 0.03	4 : 0.01	b : 0.01	6 : 0.01	
e : 0.16	g : 0.16	f : 0.11	i : 0.11	= : 0.09	] : 0.07	c : 0.05	d : 0.05	4 : 0.03	a : 0.03	h : 0.03	3 : 0.01	2 : 0.01	b : 0.01	
g : 0.18	f : 0.12	i : 0.11	e : 0.09	] : 0.07	= : 0.07	4 : 0.05	c : 0.05	3 : 0.03	h : 0.03	d : 0.03	b : 0.03	0 : 0.01	2 : 0.01	a : 0.01	: : 0.01	
g : 0.16	e : 0.12	f : 0.11	i : 0.09	] : 0.09	c : 0.07	3 : 0.05	4 : 0.05	b : 0.05	d : 0.03	= : 0.03	2 : 0.03	0 : 0.01	h : 0.01	a : 0.01	
e : 0.14	g : 0.11	f : 0.09	4 : 0.09	] : 0.09	i : 0.09	c : 0.09	2 : 0.05	b : 0.05	3 : 0.03	d : 0.03	0 : 0.01	= : 0.01	h : 0.01	a : 0.01	: : 0.01	

#score	645.6463857864128
#seq	54
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF146YPF_DDX51_CDS_m1_run1.txt

#BEAR
]eeeeeggggggg[a[a[cccoooooocccaa]ggggggg	chr19:1407621-1407886(+)$1	265	189	229	13.4704
gccc[ccc[dddd[bb####===========[a[dddd!!	chr19:12845210-12845482(-)$1	272	93	133	11.8509
dd::iiiiiiiii[cccrrrrrrrrrccc22iiiiiiiii	chr11:65350526-65350804(+)$1	278	101	141	13.0541
fff!!eeeee[bb"""bbnnnnnbb333bb]eeeee]fff	chr5:138629681-138629966(+)$1	285	90	130	12.9607
ccc[iiiiiiiiifffffflllffffff333iiiiiiiii	chr19:18548429-18548688(-)$1	259	152	192	15.4417
hh===========[a"""eeeee"""a[a[iiiiiiiiio	chr5:179248031-179248276(+)$1	245	9	49	12.7606
fff"""ggggggg[bb[bbmmmmbb]bb22ggggggg]ff	chr19:4037218-4037484(+)$1	266	93	133	14.2966
ddddiiiiiiiii[bba[annnnna]a]bb]iiiiiiiii	chr19:2270490-2270716(+)$1	226	130	170	16.9788
ggggggg[eeeee[ccc[bbnnnnnbb]ccc]eeeee]gg	chr4:79697703-79697963(+)$1	260	209	249	12.1597
ggggggg[bb[ccc[bboooooobb]ccc22bb22ggggg	chr1:110527543-110527808(+)$1	265	3	43	13.8823
cc[a!!dddd[bb[a[cccmmmmccc]abb]dddda]ccc	chr16:69419499-69419750(-)$1	251	80	120	13.4041
gggggccc[ccc[cccccclllccc22ccc]cccccc]gg	chr2:54197735-54197984(-)$1	249	95	135	15.2657
=========[a[a[eeeeemmmmeeeee]a]a22======	chr10:72503663-72503929(+)$1	266	141	181	14.8823
gggggccc[ccc[cccccclllccc22ccc]cccccc]gg	chr2:54197784-54198040(-)$1	256	151	191	15.2657
[dddd[ggggggg[bb[bbmmmmbb]bb]ggggggg]ddd	chr9:101867477-101867761(+)$1	284	57	97	13.2892
g[ggggggg[a[bb[cccooooooccc]bb]a22gggggg	chr19:18547577-18547844(-)$1	267	111	151	15.4468
#iiiiiiiii[bb[eeeeellleeeee]bb22iiiiiiii	chr19:5719720-5720101(-)$1	381	124	164	15.2442

#otherMatches

#Seq PSSM
AGCGGCGCGGGCCUGCGUCUccgccccgagcccggcccgc	chr19:1407621-1407886(+)$1	265	189	229	13.4704
gggcugagucgggaucggggacgucgcccgagagcgggga	chr19:12845210-12845482(-)$1	272	93	133	11.8509
UCAGGGGUCCCAGGGCUAGAAUCUGAGGUAGCUGGGGCCC	chr11:65350526-65350804(+)$1	278	101	141	13.0541
GAGAUUUUGGGUGAAGAGGUGCGCUGACCGGCCGAGCUUC	chr5:138629681-138629966(+)$1	285	90	130	12.9607
CCGCCCGGCAGGUGCCCCGGCUCGGGGUCAUGCUUGUCGG	chr19:18548429-18548688(-)$1	259	152	192	15.4417
CGAGGCUGCGGCGGGUCCGGGACCCUGCGAGCGGCUGCUG	chr5:179248031-179248276(+)$1	245	9	49	12.7606
UGGGGAGUUGGGGGGGUGGGGCACCUCCAGCCCCGGCGUC	chr19:4037218-4037484(+)$1	266	93	133	14.2966
GUUGUGGGGGAGCCCGCGGGGUCUCGGUCGAGCUUUCCCG	chr19:2270490-2270716(+)$1	226	130	170	16.9788
GGAGGGUUGGGGUGUGGCGGCGGCUUCUCCGGGUCCUCGC	chr4:79697703-79697963(+)$1	260	209	249	12.1597
UCGACGCAGgggccggcaggagggugggcgaucgcguguc	chr1:110527543-110527808(+)$1	265	3	43	13.8823
cggcgggggcgccacgagccggggcuggggggcccggcgg	chr16:69419499-69419750(-)$1	251	80	120	13.4041
gcccccggagccgggcgggcgucccgagccgggcccgcgg	chr2:54197735-54197984(-)$1	249	95	135	15.2657
CUCACCUCUGGCCUCAGCCUGUCGGCUGUGACAAGGAGGU	chr10:72503663-72503929(+)$1	266	141	181	14.8823
gcccccggagccgggcgggcgucccgagccgggcccgcgg	chr2:54197784-54198040(-)$1	256	151	191	15.2657
GCUggcggcggcggcggcggcggcggcggcgCUGCUCCCG	chr9:101867477-101867761(+)$1	284	57	97	13.2892
GAGGGGCCCAGGAUCCGGGCAGGGCCGAGUGUGAGGGUCC	chr19:18547577-18547844(-)$1	267	111	151	15.4468
GCCGAGGCCCGGCAAUUGGGGGCCAAUGGCGGGGGUUUUG	chr19:5719720-5720101(-)$1	381	124	164	15.2442

#DB
.)))))(((((((.(.(.(((......))))).)))))))	chr19:1407621-1407886(+)$1	1	189	229	13.4704
((((.(((.((((.((....(((((((((((.(.((((..	chr19:12845210-12845482(-)$1	1	93	133	11.8509
))..(((((((((.(((.........)))..)))))))))	chr11:65350526-65350804(+)$1	1	101	141	13.0541
(((..(((((.((...((.....))...)).))))).)))	chr5:138629681-138629966(+)$1	1	90	130	12.9607
(((.(((((((((((((((...))))))...)))))))))	chr19:18548429-18548688(-)$1	1	152	192	15.4417
(((((((((((((.(...(((((...(.(.(((((((((.	chr5:179248031-179248276(+)$1	1	9	49	12.7606
(((...(((((((.((.((....)).))..))))))).))	chr19:4037218-4037484(+)$1	1	93	133	14.2966
))))(((((((((.(((.(.....).).)).)))))))))	chr19:2270490-2270716(+)$1	1	130	170	16.9788
(((((((.(((((.(((.((.....)).))).))))).))	chr4:79697703-79697963(+)$1	1	209	249	12.1597
(((((((.((.(((.((......)).)))..))..)))))	chr1:110527543-110527808(+)$1	1	3	43	13.8823
((.(..((((.((.(.(((....))).))).))))).)))	chr16:69419499-69419750(-)$1	1	80	120	13.4041
((((((((.(((.((((((...)))..))).)))))).))	chr2:54197735-54197984(-)$1	1	95	135	15.2657
(((((((((.(.(.(((((....))))).).)..))))))	chr10:72503663-72503929(+)$1	1	141	181	14.8823
((((((((.(((.((((((...)))..))).)))))).))	chr2:54197784-54198040(-)$1	1	151	191	15.2657
.((((.(((((((.((.((....)).)).))))))).)))	chr9:101867477-101867761(+)$1	1	57	97	13.2892
(.(((((((.(.((.(((......))).)).)..))))))	chr19:18547577-18547844(-)$1	1	111	151	15.4468
.(((((((((.((.(((((...))))).))..))))))))	chr19:5719720-5720101(-)$1	1	124	164	15.2442

#PSSM
g : 0.35	d : 0.11	f : 0.11	c : 0.11	] : 0.05	h : 0.05	= : 0.05	[ : 0.05	# : 0.05	
g : 0.23	c : 0.17	d : 0.17	f : 0.11	e : 0.05	h : 0.05	= : 0.05	[ : 0.05	i : 0.05	
g : 0.29	c : 0.11	f : 0.11	= : 0.11	d : 0.11	e : 0.05	: : 0.05	[ : 0.05	i : 0.05	
g : 0.29	= : 0.11	d : 0.11	e : 0.05	c : 0.05	: : 0.05	! : 0.05	[ : 0.05	" : 0.05	a : 0.05	i : 0.05	
g : 0.29	i : 0.23	! : 0.11	= : 0.11	e : 0.05	[ : 0.05	" : 0.05	d : 0.05	
i : 0.23	c : 0.17	g : 0.17	e : 0.11	= : 0.11	" : 0.05	! : 0.05	[ : 0.05	
g : 0.35	i : 0.23	c : 0.17	= : 0.11	e : 0.05	d : 0.05	
g : 0.23	i : 0.23	c : 0.17	= : 0.11	[ : 0.11	e : 0.05	d : 0.05	
g : 0.23	i : 0.23	[ : 0.17	e : 0.11	= : 0.11	b : 0.05	d : 0.05	
i : 0.23	g : 0.17	d : 0.11	e : 0.11	c : 0.11	[ : 0.11	= : 0.05	b : 0.05	
[ : 0.23	g : 0.17	i : 0.17	c : 0.11	a : 0.11	d : 0.05	= : 0.05	e : 0.05	
g : 0.17	i : 0.17	b : 0.17	c : 0.17	[ : 0.11	d : 0.05	= : 0.05	e : 0.05	
b : 0.23	g : 0.17	i : 0.17	[ : 0.11	d : 0.05	= : 0.05	e : 0.05	c : 0.05	a : 0.05	
[ : 0.64	c : 0.17	" : 0.05	f : 0.05	b : 0.05	
b : 0.23	c : 0.23	a : 0.17	[ : 0.11	e : 0.11	" : 0.05	f : 0.05	
b : 0.29	c : 0.29	[ : 0.11	" : 0.11	e : 0.11	f : 0.05	
c : 0.35	a : 0.11	b : 0.11	[ : 0.11	e : 0.11	# : 0.05	f : 0.05	" : 0.05	
c : 0.23	[ : 0.17	b : 0.17	e : 0.11	# : 0.05	r : 0.05	f : 0.05	" : 0.05	o : 0.05	
c : 0.23	e : 0.17	b : 0.17	o : 0.11	# : 0.05	r : 0.05	n : 0.05	f : 0.05	a : 0.05	
l : 0.23	m : 0.23	n : 0.11	o : 0.11	c : 0.05	# : 0.05	r : 0.05	e : 0.05	b : 0.05	
l : 0.23	m : 0.23	n : 0.17	o : 0.11	c : 0.05	= : 0.05	r : 0.05	e : 0.05	
l : 0.23	m : 0.23	o : 0.17	n : 0.17	= : 0.05	r : 0.05	e : 0.05	
m : 0.23	o : 0.17	n : 0.17	e : 0.11	c : 0.11	= : 0.05	r : 0.05	f : 0.05	
b : 0.23	c : 0.17	o : 0.11	n : 0.11	e : 0.11	= : 0.05	r : 0.05	f : 0.05	" : 0.05	
b : 0.23	c : 0.23	e : 0.11	o : 0.05	= : 0.05	r : 0.05	f : 0.05	" : 0.05	a : 0.05	n : 0.05	
] : 0.23	c : 0.11	2 : 0.11	e : 0.11	o : 0.05	= : 0.05	r : 0.05	3 : 0.05	f : 0.05	" : 0.05	b : 0.05	
c : 0.17	b : 0.17	a : 0.11	2 : 0.11	e : 0.11	o : 0.05	= : 0.05	3 : 0.05	f : 0.05	] : 0.05	
c : 0.29	] : 0.23	b : 0.11	= : 0.05	3 : 0.05	f : 0.05	[ : 0.05	a : 0.05	e : 0.05	
c : 0.35	b : 0.29	] : 0.11	= : 0.05	3 : 0.05	a : 0.05	2 : 0.05	
b : 0.29	c : 0.23	2 : 0.17	= : 0.05	3 : 0.05	[ : 0.05	a : 0.05	g : 0.05	
] : 0.41	2 : 0.17	g : 0.11	a : 0.05	= : 0.05	3 : 0.05	i : 0.05	c : 0.05	
i : 0.23	a : 0.17	g : 0.11	c : 0.11	[ : 0.05	e : 0.05	] : 0.05	b : 0.05	d : 0.05	2 : 0.05	
i : 0.29	e : 0.11	g : 0.11	c : 0.11	2 : 0.11	] : 0.05	a : 0.05	b : 0.05	d : 0.05	
i : 0.29	g : 0.17	2 : 0.17	e : 0.11	c : 0.11	[ : 0.05	d : 0.05	
i : 0.29	g : 0.23	d : 0.11	e : 0.11	c : 0.11	2 : 0.05	= : 0.05	
g : 0.29	i : 0.29	e : 0.11	c : 0.11	d : 0.05	a : 0.05	= : 0.05	
i : 0.29	g : 0.23	] : 0.17	c : 0.11	d : 0.05	e : 0.05	= : 0.05	
i : 0.29	] : 0.23	g : 0.17	d : 0.11	f : 0.05	c : 0.05	= : 0.05	
g : 0.35	i : 0.29	f : 0.11	! : 0.05	c : 0.05	= : 0.05	d : 0.05	
g : 0.35	i : 0.23	f : 0.11	! : 0.05	o : 0.05	c : 0.05	= : 0.05	d : 0.05	

#score	239.65460555540605
#seq	17
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_UTR_m2_run2.txt

#BEAR
cc"""ddddeeeee[aqqqqqqqqaeeeee333	chr19:49606592-49606852(+)$1	260	140	173	11.1191
eeeee^^^^^^^^^^^^^^^^^^^^eeeee666	chr8:144668923-144669265(-)$1	342	215	248	17.8552
!dddd[bb[cccvvvvvvvvvvvvvccc]bbdd	chr8:145742468-145742753(-)$1	285	60	93	23.0687
ffffff[eeeeevvvvvvvvvvvvveeeee22f	chr11:62609011-62609212(-)$1	201	77	110	29.4885
b!!iiiiiiiiirrrrrrrrriiiiiiiii22b	chr17:7080813-7081042(-)$1	229	51	84	15.2294
ffffff[eeeeevvvvvvvvvvvvveeeee22f	chr11:62609082-62609293(-)$1	211	158	191	29.4885
fffff:ccc[cccwwwwwwwwwwwwwwcccccc	chr3:184082592-184082887(+)$1	295	253	286	21.7733
dddd$$$$$eeeeettttttttttteeeee333	chr3:49051478-49051744(+)$1	266	58	91	22.9036
ffffff[eeeeevvvvvvvvvvvvveeeee22f	chr11:62609021-62609229(-)$1	208	94	127	29.4885
ffffff[eeeeevvvvvvvvvvvvveeeee22f	chr11:62609093-62609310(-)$1	217	175	208	29.4885
FFFFFccc[cccwwwwwwwwwwwwwwccc]ccc	chr9:117054285-117054525(+)$1	240	204	237	22.3970
!!==========vvvvvvvvvvvvv========	chr2:97533543-97533808(-)$1	265	37	70	25.8321

#otherMatches

#Seq PSSM
GGUAAGCGGUCCCGUGUCCCCCCCCCGGGAAGC	chr19:49606592-49606852(+)$1	260	140	173	11.1191
UGCUGACUUUGCCUCUUUCCCCUCCCAGCAGAA	chr8:144668923-144669265(-)$1	342	215	248	17.8552
GGGGGACUGGGCAAAGUGAAGAAGGGCCGGGCC	chr8:145742468-145742753(-)$1	285	60	93	23.0687
gcaucgaccugguauugcaguacuuccaggaac	chr11:62609011-62609212(-)$1	201	77	110	29.4885
UCCGAGGCGCGGGCCACUCAAUUGCGUUUCAAG	chr17:7080813-7081042(-)$1	229	51	84	15.2294
gcaucgaccugguauugcaguacuuccaggaac	chr11:62609082-62609293(-)$1	211	158	191	29.4885
UGAAUACAGACAAUAAUAAGAGACUUUUUGCUG	chr3:184082592-184082887(+)$1	295	253	286	21.7733
ACCCAGAGACCAGGUAAUAUAUGCUCCUGGGCA	chr3:49051478-49051744(+)$1	266	58	91	22.9036
gcaucgaccugguauugcaguacuuccaggaac	chr11:62609021-62609229(-)$1	208	94	127	29.4885
gcaucgaccugguauugcaguacuuccaggaac	chr11:62609093-62609310(-)$1	217	175	208	29.4885
GGUGAGUGAGCGCCAAAGAAUacacaugcccac	chr9:117054285-117054525(+)$1	240	204	237	22.3970
ACCGGGGCUCCUGGAAGGCCUGAUGAGGAGUCC	chr2:97533543-97533808(-)$1	265	37	70	25.8321

#DB
((...(((((((((.(........))))))...	chr19:49606592-49606852(+)$1	1	140	173	11.1191
(((((....................)))))...	chr8:144668923-144669265(-)$1	1	215	248	17.8552
.((((.((.(((.............))).))))	chr8:145742468-145742753(-)$1	1	60	93	23.0687
((((((.(((((.............)))))..)	chr11:62609011-62609212(-)$1	1	77	110	29.4885
(..(((((((((.........)))))))))..)	chr17:7080813-7081042(-)$1	1	51	84	15.2294
((((((.(((((.............)))))..)	chr11:62609082-62609293(-)$1	1	158	191	29.4885
))))).(((.(((..............))))))	chr3:184082592-184082887(+)$1	1	253	286	21.7733
((((.....(((((...........)))))...	chr3:49051478-49051744(+)$1	1	58	91	22.9036
((((((.(((((.............)))))..)	chr11:62609021-62609229(-)$1	1	94	127	29.4885
((((((.(((((.............)))))..)	chr11:62609093-62609310(-)$1	1	175	208	29.4885
)))))(((.(((..............))).)))	chr9:117054285-117054525(+)$1	1	204	237	22.3970
..((((((((((.............))))))))	chr2:97533543-97533808(-)$1	1	37	70	25.8321

#PSSM
f : 0.41	! : 0.16	c : 0.08	e : 0.08	b : 0.08	d : 0.08	F : 0.08	
f : 0.41	d : 0.16	! : 0.16	c : 0.08	e : 0.08	F : 0.08	
f : 0.41	d : 0.16	" : 0.08	e : 0.08	! : 0.08	F : 0.08	= : 0.08	
f : 0.41	d : 0.16	" : 0.08	e : 0.08	i : 0.08	F : 0.08	= : 0.08	
f : 0.41	" : 0.08	e : 0.08	d : 0.08	i : 0.08	$ : 0.08	F : 0.08	= : 0.08	
f : 0.33	d : 0.08	^ : 0.08	[ : 0.08	i : 0.08	: : 0.08	$ : 0.08	c : 0.08	= : 0.08	
[ : 0.33	c : 0.16	d : 0.08	^ : 0.08	b : 0.08	i : 0.08	$ : 0.08	= : 0.08	
e : 0.33	c : 0.16	d : 0.08	^ : 0.08	b : 0.08	i : 0.08	$ : 0.08	= : 0.08	
e : 0.33	[ : 0.16	d : 0.08	^ : 0.08	i : 0.08	c : 0.08	$ : 0.08	= : 0.08	
e : 0.49	c : 0.16	^ : 0.08	i : 0.08	[ : 0.08	= : 0.08	
e : 0.49	c : 0.25	^ : 0.08	i : 0.08	= : 0.08	
e : 0.49	c : 0.25	^ : 0.08	i : 0.08	= : 0.08	
v : 0.49	e : 0.16	^ : 0.08	r : 0.08	c : 0.08	w : 0.08	
v : 0.49	e : 0.16	w : 0.16	^ : 0.08	r : 0.08	
v : 0.49	w : 0.16	[ : 0.08	^ : 0.08	r : 0.08	t : 0.08	
v : 0.49	w : 0.16	a : 0.08	^ : 0.08	r : 0.08	t : 0.08	
v : 0.49	w : 0.16	q : 0.08	^ : 0.08	r : 0.08	t : 0.08	
v : 0.49	w : 0.16	q : 0.08	^ : 0.08	r : 0.08	t : 0.08	
v : 0.49	w : 0.16	q : 0.08	^ : 0.08	r : 0.08	t : 0.08	
v : 0.49	w : 0.16	q : 0.08	^ : 0.08	r : 0.08	t : 0.08	
v : 0.49	w : 0.16	q : 0.08	^ : 0.08	r : 0.08	t : 0.08	
v : 0.49	w : 0.16	q : 0.08	^ : 0.08	i : 0.08	t : 0.08	
v : 0.49	w : 0.16	q : 0.08	^ : 0.08	i : 0.08	t : 0.08	
v : 0.49	w : 0.16	q : 0.08	^ : 0.08	i : 0.08	t : 0.08	
v : 0.49	w : 0.16	a : 0.08	^ : 0.08	i : 0.08	t : 0.08	
e : 0.58	w : 0.16	c : 0.08	i : 0.08	= : 0.08	
e : 0.58	c : 0.16	i : 0.08	w : 0.08	= : 0.08	
e : 0.58	c : 0.25	i : 0.08	= : 0.08	
e : 0.58	c : 0.16	] : 0.08	i : 0.08	= : 0.08	
e : 0.58	b : 0.08	i : 0.08	c : 0.08	] : 0.08	= : 0.08	
2 : 0.41	3 : 0.16	c : 0.16	6 : 0.08	b : 0.08	= : 0.08	
2 : 0.41	3 : 0.16	c : 0.16	6 : 0.08	d : 0.08	= : 0.08	
f : 0.33	3 : 0.16	c : 0.16	6 : 0.08	d : 0.08	b : 0.08	= : 0.08	

#score	278.13279368581664
#seq	12
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_CDS_m3_run2.txt

#BEAR
eeeeeqqqqqqqqeeeee	chr1:24021077-24021335(+)$1	258	228	246	13.9058
:ddddqqqqqqqqddddh	chr2:96953073-96953310(-)$1	237	83	101	12.7447
a!!bbqqqqqqqqbb22a	chr6:31857141-31857469(-)$1	328	114	132	13.4991
c[cccqqqqqqqqccc]c	chr16:2813224-2813485(+)$1	261	46	64	14.5987
gggggqqqqqqqqggggg	chr6:7303698-7303973(-)$1	275	134	152	13.7602
[ddddqqqqqqqqddddb	chr9:116170935-116171288(-)$1	353	315	333	13.5967
eeeeeqqqqqqqqeeeee	chr12:76444282-76444534(-)$1	252	177	195	13.9058
"""bbqqqqqqqqbb]gg	chr17:26906283-26906557(-)$1	274	140	158	13.5235
gggggqqqqqqqqggggg	chr8:48719631-48719928(-)$1	297	219	237	13.7602
gggggqqqqqqqqggggg	chr7:139060731-139060974(+)$1	243	200	218	13.7602
eee[aqqqqqqqqa]eee	chr1:36769424-36769712(+)$1	288	220	238	13.9170
ddcccqqqqqqqqccc22	chr5:10391600-10391949(+)$1	349	17	35	14.1969
ddddaqqqqqqqqa]ddd	chr7:142651446-142651714(-)$1	268	184	202	13.5185
c[cccqqqqqqqqccc]c	chr19:54705034-54705275(+)$1	241	221	239	14.5987
fffffqqqqqqqqfffff	chr15:76161185-76161457(+)$1	272	11	29	12.9844
eecccqqqqqqqqccc]e	chr5:138658338-138658618(+)$1	280	131	149	14.6697
#ddddqqqqqqqqdddd2	chr12:76449748-76449967(-)$1	219	120	138	13.7873
a[cccqqqqqqqqccc]a	chr1:145456890-145457197(-)$1	307	185	203	14.6820
""cccqqqqqqqqccc33	chr3:184048967-184049257(+)$1	290	133	151	14.6852
eeeeeqqqqqqqqeeeee	chr2:230656763-230657045(-)$1	282	96	114	13.9058
"ddddqqqqqqqqddddc	chr9:100777576-100777798(+)$1	222	151	169	13.8544
gg[bbqqqqqqqqbbggg	chr3:156874634-156874964(-)$1	330	22	40	13.5671
dddbbqqqqqqqqbb]dd	chr10:120797649-120797934(-)$1	285	46	64	13.1829
!ddddqqqqqqqqddddc	chr12:125398091-125398421(-)$1	330	297	315	13.9306
dd[bbqqqqqqqqbbddd	chr3:99536635-99536995(+)$1	360	233	251	13.2815
"ddddqqqqqqqqddddd	chr1:150198838-150199203(-)$1	365	246	264	13.7686
e!!bbqqqqqqqqbb22e	chr1:24021057-24021277(+)$1	220	136	154	13.5727
###bbqqqqqqqqbbccc	chr3:9487288-9487525(+)$1	237	24	42	13.4040
eee[aqqqqqqqqaeeee	chr3:156867968-156868278(-)$1	310	246	264	14.0191
!ddddqqqqqqqqdddd]	chr11:47493615-47493929(-)$1	314	22	40	13.9841
!!cccqqqqqqqqccc]a	chr16:28838143-28838410(+)$1	267	137	155	14.8503
eee[aqqqqqqqqa]eee	chr19:54705253-54705497(+)$1	244	116	134	13.9170
hh[bbqqqqqqqqbbhhh	chr19:19105888-19106180(-)$1	292	196	214	12.7298
d[cccqqqqqqqqccc]d	chr3:170584050-170584361(-)$1	311	156	174	14.4412
""cccqqqqqqqqccc44	chr2:48025688-48025961(+)$1	273	117	135	14.4494
a[cccqqqqqqqqccc]a	chr11:68660255-68660506(-)$1	251	71	89	14.6820
eeeeeqqqqqqqqeeeee	chr1:24976398-24976665(+)$1	267	179	197	13.9058
gg[bbqqqqqqqqbb22g	chr4:59875-60158(+)$1	283	77	95	13.3637
eddddqqqqqqqqdddd:	chr2:233697466-233697806(+)$1	340	107	125	12.8479
::cccqqqqqqqqccccc	chr14:73572478-73572888(+)$1	410	41	59	12.2646
fffffqqqqqqqqfffff	chr20:61537182-61537500(-)$1	318	62	80	12.9844
fffffqqqqqqqqfffff	chr1:35652701-35652952(-)$1	251	196	214	12.9844
h[cccqqqqqqqqccc]h	chr15:59191827-59192154(-)$1	327	173	191	14.3521
eeeeeqqqqqqqqeeeee	chr19:14199895-14200272(-)$1	377	53	71	13.9058
!ddddqqqqqqqqdddd2	chr17:48820972-48821274(+)$1	302	252	270	13.8970
hhcccqqqqqqqqccc]h	chr13:107196274-107196609(-)$1	335	94	112	14.0233
[a[bbqqqqqqqqbb]a2	chr2:86258547-86258847(-)$1	300	87	105	13.3964
:ddddqqqqqqqqdddde	chr2:170667684-170667933(+)$1	249	66	84	12.9077
fffffqqqqqqqqfffff	chr7:105176995-105177305(+)$1	310	217	235	12.9844
fffffqqqqqqqqfffff	chr5:145850104-145850411(+)$1	307	1	19	12.9844
eecccqqqqqqqqccc]e	chr9:131456819-131457056(+)$1	237	56	74	14.6697
eeeeeqqqqqqqqeeeee	chr5:32395160-32395492(-)$1	332	12	30	13.9058
eeeeeqqqqqqqqeeeee	chr3:196214164-196214498(-)$1	334	22	40	13.9058
eeeeeqqqqqqqqeeeee	chr9:37126536-37126853(+)$1	317	51	69	13.9058
eeeeeqqqqqqqqeeeee	chr4:73967994-73968347(-)$1	353	301	319	13.9058
!!cccqqqqqqqqccc22	chr6:44217972-44218197(+)$1	225	48	66	14.6614
eecccqqqqqqqqccc22	chr1:205718994-205719228(-)$1	234	144	162	14.4256
eeeeeqqqqqqqqeeeee	chr2:168726328-168726589(-)$1	261	71	89	13.9058
fffffqqqqqqqqfffff	chr9:131036053-131036352(-)$1	299	211	229	12.9844
c[cccqqqqqqqqccc]c	chr7:127975841-127976150(-)$1	309	72	90	14.5987
:ddddqqqqqqqqddddg	chr12:69656090-69656459(+)$1	369	214	232	12.8887
eeeeeqqqqqqqqeeeee	chr1:38166030-38166319(+)$1	289	258	276	13.9058
b!!bbqqqqqqqqbb22b	chr2:47388761-47389098(-)$1	337	127	145	12.9054
ggg[aqqqqqqqqa]ggg	chr2:232577052-232577257(+)$1	205	54	72	13.7420
[ddddqqqqqqqqdddd]	chr5:95087842-95088112(+)$1	270	102	120	13.9339
##cccqqqqqqqqccc22	chr14:23528454-23528775(-)$1	321	219	237	14.3894
!!cccqqqqqqqqccc22	chrX:53588970-53589221(-)$1	251	179	197	14.6614

#otherMatches

#Seq PSSM
CUCCUGGUCUGUGAGGAG	chr1:24021077-24021335(+)$1	258	228	246	13.9058
AGAAGAAUUUCCCCUUUG	chr2:96953073-96953310(-)$1	237	83	101	12.7447
CAACUAAGUgaagaggag	chr6:31857141-31857469(-)$1	328	114	132	13.4991
UCCACAACCCAAAGUGAA	chr16:2813224-2813485(+)$1	261	46	64	14.5987
GUGAACCUGAAGCUUCAC	chr6:7303698-7303973(-)$1	275	134	152	13.7602
AUCAGAAUAAAAACUGAC	chr9:116170935-116171288(-)$1	353	315	333	13.5967
CAGUGUUAUAUUUUACUG	chr12:76444282-76444534(-)$1	252	177	195	13.9058
AAAGAAGAAGCCAUCAGG	chr17:26906283-26906557(-)$1	274	140	158	13.5235
GCCCGGAAGCAGGUGGGU	chr8:48719631-48719928(-)$1	297	219	237	13.7602
UACUGAUAUGCUGCAGUA	chr7:139060731-139060974(+)$1	243	200	218	13.7602
CAGGGGAGAGAGGCGCUG	chr1:36769424-36769712(+)$1	288	220	238	13.9170
GUGGAUCUAAAUUUCUGG	chr5:10391600-10391949(+)$1	349	17	35	14.1969
GGCCCUGCCCUCUGAGGC	chr7:142651446-142651714(-)$1	268	184	202	13.5185
UAUUCGUGGUUUAGGAAG	chr19:54705034-54705275(+)$1	241	221	239	14.5987
CAGAUGUUUGAGAGUUUG	chr15:76161185-76161457(+)$1	272	11	29	12.9844
UGAAGAUGAGCUACUUGU	chr5:138658338-138658618(+)$1	280	131	149	14.6697
UUAAGAAUGUUGACUUGC	chr12:76449748-76449967(-)$1	219	120	138	13.7873
ugaugaagaagaacauga	chr1:145456890-145457197(-)$1	307	185	203	14.6820
GAAGGAAUUUCUACCUGA	chr3:184048967-184049257(+)$1	290	133	151	14.6852
UCUUCAGGGUAUGGAAGA	chr2:230656763-230657045(-)$1	282	96	114	13.9058
UGCAGAAACAGAACUGUU	chr9:100777576-100777798(+)$1	222	151	169	13.8544
UUUACUCAAGCACGUAAC	chr3:156874634-156874964(-)$1	330	22	40	13.5671
CAUCAGAAGAACGUGAAU	chr10:120797649-120797934(-)$1	285	46	64	13.1829
CCACCCUGCACCUGGUGC	chr12:125398091-125398421(-)$1	330	297	315	13.9306
GGAGCAGGCAGCAGCCCA	chr3:99536635-99536995(+)$1	360	233	251	13.2815
AUGAAAGAAGAAAUUCAG	chr1:150198838-150199203(-)$1	365	246	264	13.7686
AAACUUUGGUUUUGGGAU	chr1:24021057-24021277(+)$1	220	136	154	13.5727
ACAGCUGAAUAUUGCCUC	chr3:9487288-9487525(+)$1	237	24	42	13.4040
CACACAAAUUUUCGGUGG	chr3:156867968-156868278(-)$1	310	246	264	14.0191
UUUGUAAGUUACGACAAU	chr11:47493615-47493929(-)$1	314	22	40	13.9841
GACGACUAUGACCUCGAG	chr16:28838143-28838410(+)$1	267	137	155	14.8503
GGAACAAACGUGAGGUCU	chr19:54705253-54705497(+)$1	244	116	134	13.9170
CUCGGAAAGGGCAUCAGG	chr19:19105888-19106180(-)$1	292	196	214	12.7298
UAGUCAAGAUGAAGAUGA	chr3:170584050-170584361(-)$1	311	156	174	14.4412
AGAGGAAGUACAGCCUAA	chr2:48025688-48025961(+)$1	273	117	135	14.4494
CAGUCAUUGAAAAGACAG	chr11:68660255-68660506(-)$1	251	71	89	14.6820
GUAUCAUACAAUAGAUGC	chr1:24976398-24976665(+)$1	267	179	197	13.9058
UUUGUGAUCUCUAACCCA	chr4:59875-60158(+)$1	283	77	95	13.3637
AGGCUGCAAAAUGGGCCC	chr2:233697466-233697806(+)$1	340	107	125	12.8479
AACAGAAAGUAGACUGAC	chr14:73572478-73572888(+)$1	410	41	59	12.2646
CUCUUCUGUGCACAAGAG	chr20:61537182-61537500(-)$1	318	62	80	12.9844
GGUGGAGUUGUAACCACU	chr1:35652701-35652952(-)$1	251	196	214	12.9844
GCUGAAGAUGCCAUCACU	chr15:59191827-59192154(-)$1	327	173	191	14.3521
AUUAGAACAGCUACUAAU	chr19:14199895-14200272(-)$1	377	53	71	13.9058
ACUCAUUUUUAUUUGAGA	chr17:48820972-48821274(+)$1	302	252	270	13.8970
CUUUCAGGCCGAAGAACA	chr13:107196274-107196609(-)$1	335	94	112	14.0233
AGGUUGAUUAUGAGAGUg	chr2:86258547-86258847(-)$1	300	87	105	13.3964
AGGAAAAGUACAGUUUCA	chr2:170667684-170667933(+)$1	249	66	84	12.9077
ACUGAAAUAAUUAUCAGU	chr7:105176995-105177305(+)$1	310	217	235	12.9844
UGGGAAUGGAAUAUCUUA	chr5:145850104-145850411(+)$1	307	1	19	12.9844
CUCAGCAUUAAUCCUGAA	chr9:131456819-131457056(+)$1	237	56	74	14.6697
UGUAUGAUUAAAAAUACA	chr5:32395160-32395492(-)$1	332	12	30	13.9058
GAUUGCUCUUUAUUAAUC	chr3:196214164-196214498(-)$1	334	22	40	13.9058
GAUGGGUCAGAGGUCAUC	chr9:37126536-37126853(+)$1	317	51	69	13.9058
AAUUAUAUUUACUUGAUU	chr4:73967994-73968347(-)$1	353	301	319	13.9058
UACUUAGUUggagaagga	chr6:44217972-44218197(+)$1	225	48	66	14.6614
GUCAGUGCGGAGUCUGAG	chr1:205718994-205719228(-)$1	234	144	162	14.4256
AUGUUUCUUGCUUGACAU	chr2:168726328-168726589(-)$1	261	71	89	13.9058
CUCACCUGAGGAUGUGAG	chr9:131036053-131036352(-)$1	299	211	229	12.9844
AAUCUAAACAUCAGGAAU	chr7:127975841-127976150(-)$1	309	72	90	14.5987
agcgugaccgagagcgCG	chr12:69656090-69656459(+)$1	369	214	232	12.8887
AGUAGAGAUGAUCCUACU	chr1:38166030-38166319(+)$1	289	258	276	13.9058
AGAACUUCGCCAUGUGAU	chr2:47388761-47389098(-)$1	337	127	145	12.9054
ACAGUAGGAGGGAAGUGU	chr2:232577052-232577257(+)$1	205	54	72	13.7420
GGAGUAUUUUAUGAUUCA	chr5:95087842-95088112(+)$1	270	102	120	13.9339
AGCGAGAGAAACGUCGGG	chr14:23528454-23528775(-)$1	321	219	237	14.3894
AGAUGACCUCUUCCAUGG	chrX:53588970-53589221(-)$1	251	179	197	14.6614

#DB
(((((........)))))	chr1:24021077-24021335(+)$1	1	228	246	13.9058
.((((........))))(	chr2:96953073-96953310(-)$1	1	83	101	12.7447
(..((........))..)	chr6:31857141-31857469(-)$1	1	114	132	13.4991
(.(((........))).)	chr16:2813224-2813485(+)$1	1	46	64	14.5987
(((((........)))))	chr6:7303698-7303973(-)$1	1	134	152	13.7602
.((((........)))))	chr9:116170935-116171288(-)$1	1	315	333	13.5967
(((((........)))))	chr12:76444282-76444534(-)$1	1	177	195	13.9058
...((........)).))	chr17:26906283-26906557(-)$1	1	140	158	13.5235
(((((........)))))	chr8:48719631-48719928(-)$1	1	219	237	13.7602
(((((........)))))	chr7:139060731-139060974(+)$1	1	200	218	13.7602
(((.(........).)))	chr1:36769424-36769712(+)$1	1	220	238	13.9170
(((((........)))..	chr5:10391600-10391949(+)$1	1	17	35	14.1969
(((((........).)))	chr7:142651446-142651714(-)$1	1	184	202	13.5185
(.(((........))).)	chr19:54705034-54705275(+)$1	1	221	239	14.5987
(((((........)))))	chr15:76161185-76161457(+)$1	1	11	29	12.9844
(((((........))).)	chr5:138658338-138658618(+)$1	1	131	149	14.6697
.((((........)))).	chr12:76449748-76449967(-)$1	1	120	138	13.7873
(.(((........))).)	chr1:145456890-145457197(-)$1	1	185	203	14.6820
..(((........)))..	chr3:184048967-184049257(+)$1	1	133	151	14.6852
(((((........)))))	chr2:230656763-230657045(-)$1	1	96	114	13.9058
.((((........)))))	chr9:100777576-100777798(+)$1	1	151	169	13.8544
((.((........)))))	chr3:156874634-156874964(-)$1	1	22	40	13.5671
(((((........)).))	chr10:120797649-120797934(-)$1	1	46	64	13.1829
.((((........)))))	chr12:125398091-125398421(-)$1	1	297	315	13.9306
((.((........)))))	chr3:99536635-99536995(+)$1	1	233	251	13.2815
.((((........)))))	chr1:150198838-150199203(-)$1	1	246	264	13.7686
(..((........))..)	chr1:24021057-24021277(+)$1	1	136	154	13.5727
...((........)))))	chr3:9487288-9487525(+)$1	1	24	42	13.4040
(((.(........)))))	chr3:156867968-156868278(-)$1	1	246	264	14.0191
.((((........)))).	chr11:47493615-47493929(-)$1	1	22	40	13.9841
..(((........))).)	chr16:28838143-28838410(+)$1	1	137	155	14.8503
(((.(........).)))	chr19:54705253-54705497(+)$1	1	116	134	13.9170
((.((........)))))	chr19:19105888-19106180(-)$1	1	196	214	12.7298
(.(((........))).)	chr3:170584050-170584361(-)$1	1	156	174	14.4412
..(((........)))..	chr2:48025688-48025961(+)$1	1	117	135	14.4494
(.(((........))).)	chr11:68660255-68660506(-)$1	1	71	89	14.6820
(((((........)))))	chr1:24976398-24976665(+)$1	1	179	197	13.9058
((.((........))..)	chr4:59875-60158(+)$1	1	77	95	13.3637
)((((........)))).	chr2:233697466-233697806(+)$1	1	107	125	12.8479
..(((........)))((	chr14:73572478-73572888(+)$1	1	41	59	12.2646
(((((........)))))	chr20:61537182-61537500(-)$1	1	62	80	12.9844
(((((........)))))	chr1:35652701-35652952(-)$1	1	196	214	12.9844
(.(((........))).)	chr15:59191827-59192154(-)$1	1	173	191	14.3521
(((((........)))))	chr19:14199895-14200272(-)$1	1	53	71	13.9058
.((((........)))).	chr17:48820972-48821274(+)$1	1	252	270	13.8970
(((((........))).)	chr13:107196274-107196609(-)$1	1	94	112	14.0233
.(.((........)).).	chr2:86258547-86258847(-)$1	1	87	105	13.3964
.((((........))))(	chr2:170667684-170667933(+)$1	1	66	84	12.9077
(((((........)))))	chr7:105176995-105177305(+)$1	1	217	235	12.9844
(((((........)))))	chr5:145850104-145850411(+)$1	1	1	19	12.9844
(((((........))).)	chr9:131456819-131457056(+)$1	1	56	74	14.6697
(((((........)))))	chr5:32395160-32395492(-)$1	1	12	30	13.9058
(((((........)))))	chr3:196214164-196214498(-)$1	1	22	40	13.9058
(((((........)))))	chr9:37126536-37126853(+)$1	1	51	69	13.9058
(((((........)))))	chr4:73967994-73968347(-)$1	1	301	319	13.9058
..(((........)))..	chr6:44217972-44218197(+)$1	1	48	66	14.6614
(((((........)))..	chr1:205718994-205719228(-)$1	1	144	162	14.4256
(((((........)))))	chr2:168726328-168726589(-)$1	1	71	89	13.9058
(((((........)))))	chr9:131036053-131036352(-)$1	1	211	229	12.9844
(.(((........))).)	chr7:127975841-127976150(-)$1	1	72	90	14.5987
.((((........))))(	chr12:69656090-69656459(+)$1	1	214	232	12.8887
(((((........)))))	chr1:38166030-38166319(+)$1	1	258	276	13.9058
(..((........))..)	chr2:47388761-47389098(-)$1	1	127	145	12.9054
(((.(........).)))	chr2:232577052-232577257(+)$1	1	54	72	13.7420
.((((........)))).	chr5:95087842-95088112(+)$1	1	102	120	13.9339
..(((........)))..	chr14:23528454-23528775(-)$1	1	219	237	14.3894
..(((........)))..	chrX:53588970-53589221(-)$1	1	179	197	14.6614

#PSSM
e : 0.28	g : 0.08	f : 0.08	! : 0.08	" : 0.07	d : 0.07	: : 0.05	a : 0.04	c : 0.04	[ : 0.04	# : 0.04	h : 0.04	b : 0.01	
e : 0.25	d : 0.23	[ : 0.10	! : 0.08	g : 0.08	f : 0.08	" : 0.04	# : 0.02	h : 0.02	: : 0.01	a : 0.01	
c : 0.28	e : 0.20	d : 0.20	f : 0.08	[ : 0.07	g : 0.05	! : 0.04	" : 0.01	# : 0.01	
c : 0.28	d : 0.19	e : 0.16	b : 0.16	f : 0.08	[ : 0.05	g : 0.04	
c : 0.28	d : 0.17	e : 0.16	b : 0.16	f : 0.08	a : 0.07	g : 0.04	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.28	d : 0.17	e : 0.16	b : 0.16	f : 0.08	a : 0.07	g : 0.04	
c : 0.28	e : 0.17	d : 0.17	b : 0.16	f : 0.08	] : 0.05	g : 0.04	
c : 0.29	e : 0.20	d : 0.20	f : 0.08	g : 0.07	2 : 0.05	] : 0.04	h : 0.01	
d : 0.22	e : 0.20	] : 0.16	2 : 0.13	g : 0.08	f : 0.08	c : 0.02	3 : 0.01	h : 0.01	4 : 0.01	a : 0.01	
e : 0.26	g : 0.11	2 : 0.11	c : 0.10	f : 0.08	d : 0.07	h : 0.05	a : 0.05	b : 0.02	] : 0.02	3 : 0.01	4 : 0.01	: : 0.01	

#score	923.7356941845756
#seq	67
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_transcript_m3_run2.txt

#BEAR
?FFFFFFZZZDDDDG	chr20:47896768-47897026(+)$1	258	236	251	8.4260
::EEEEE~~~~FFFF	chrX:73071919-73072194(-)$1	275	165	180	10.0823
E}EEEEEZZZEEEEE	chr1:173835920-173836184(-)$1	264	224	239	12.9968
A}EEEEE}CCCYYEE	chr19:3977936-3978189(-)$1	253	225	240	10.5858
::EEEEE}CCCYYDD	chr17:7480031-7480300(+)$1	269	114	129	9.2668
::EEEEEYYEEEEEY	chr16:88870232-88870536(+)$1	304	223	238	10.9175
::EEEEEYYEEEEEZ	chr1:234745102-234745360(-)$1	258	206	221	10.4608
JJJJ}AYYA}EEEEE	chr19:39340321-39340607(-)$1	286	247	262	9.0002
::::CCCZZZEEEEE	chr11:122929526-122929781(-)$1	255	239	254	9.4191
H}EEEEEZZZEEEEE	chr3:186502480-186502745(+)$1	265	206	221	12.8646
YYEEEEEZZZEEEEE	chrX:152953830-152954113(+)$1	283	238	253	12.8514
DDDDDDDZZZEEEEE	chr16:30081050-30081284(+)$1	234	208	223	10.7026
::EEEEEZZZEEEEE	chr16:88870148-88870432(+)$1	284	141	156	12.5272
BBEEEEE}CCC}CCC	chr7:5569711-5569979(-)$1	268	233	248	8.8968
BBYYEEEEE}EEEEE	chr2:70314573-70314940(+)$1	367	172	187	10.6015
:::DDDDZZZA}FFF	chr6:31802962-31803194(+)$1	232	214	229	8.7858
c:EEEEE}EEEEE}B	chr1:200378970-200379196(-)$1	226	187	202	9.1963
:FFFFFFYYABBYYD	chr5:79946950-79947194(-)$1	244	141	156	8.1929
CDDDDBBZZZDDDD}	chr8:144940520-144940795(-)$1	275	250	265	8.8748
e::CCC}BB}EEEEE	chr19:41111295-41111612(+)$1	317	169	184	7.3875
B}EEEEEZZZFFFFF	chr19:47290824-47291110(-)$1	286	263	278	11.6153
CCEEEEEZZZCCCA}	chr6:133136345-133136614(+)$1	269	161	176	10.8883
IIII}BB}A}EEEEE	chr6:37138064-37138340(+)$1	276	241	256	9.0288

#otherMatches

#Seq PSSM
CUGUUUUUUCAUUUC	chr20:47896768-47897026(+)$1	258	236	251	8.4260
CUGGCCCAUCGGGGU	chrX:73071919-73072194(-)$1	275	165	180	10.0823
UUUGCUUGCAUCUUU	chr1:173835920-173836184(-)$1	264	224	239	12.9968
GUGGGACGUGGCUGA	chr19:3977936-3978189(-)$1	253	225	240	10.5858
AUGCGUGUCAUCUGA	chr17:7480031-7480300(+)$1	269	114	129	9.2668
UCGGUGGACGAGGUG	chr16:88870232-88870536(+)$1	304	223	238	10.9175
CUGGGACUUCACCGA	chr1:234745102-234745360(-)$1	258	206	221	10.4608
gcgggcggcggcggc	chr19:39340321-39340607(-)$1	286	247	262	9.0002
CAAGGUUUAUGAAGG	chr11:122929526-122929781(-)$1	255	239	254	9.4191
AUGGUGUGAAGUAGA	chr3:186502480-186502745(+)$1	265	206	221	12.8646
UCCGGCGACGAGAAG	chrX:152953830-152954113(+)$1	283	238	253	12.8514
GCCGAGCCCUGCAGG	chr16:30081050-30081284(+)$1	234	208	223	10.7026
cccccgcAUCGCGCC	chr16:88870148-88870432(+)$1	284	141	156	12.5272
UGCGCGUGCGCGCUG	chr7:5569711-5569979(-)$1	268	233	248	8.8968
GCUCGCUCCCGCGGC	chr2:70314573-70314940(+)$1	367	172	187	10.6015
UUCCCCGUUAGGAGU	chr6:31802962-31803194(+)$1	232	214	229	8.7858
CGUGCCGGUGCCGGA	chr1:200378970-200379196(-)$1	226	187	202	9.1963
CGCCCGUCACCCUCC	chr5:79946950-79947194(-)$1	244	141	156	8.1929
GGCGGCGAGAUCCAG	chr8:144940520-144940795(-)$1	275	250	265	8.8748
CUACACGGUGUUGGC	chr19:41111295-41111612(+)$1	317	169	184	7.3875
CGUCUGGGCGCCUGG	chr19:47290824-47291110(-)$1	286	263	278	11.6153
AGUCUGACAAACCUG	chr6:133136345-133136614(+)$1	269	161	176	10.8883
CAGCUCCUCUGGGCA	chr6:37138064-37138340(+)$1	276	241	256	9.0288

#DB
.))))))...)))))	chr20:47896768-47897026(+)$1	1	236	251	8.4260
..)))))....))))	chrX:73071919-73072194(-)$1	1	165	180	10.0823
).)))))...)))))	chr1:173835920-173836184(-)$1	1	224	239	12.9968
).))))).)))..))	chr19:3977936-3978189(-)$1	1	225	240	10.5858
..))))).)))..))	chr17:7480031-7480300(+)$1	1	114	129	9.2668
..)))))..))))).	chr16:88870232-88870536(+)$1	1	223	238	10.9175
..)))))..))))).	chr1:234745102-234745360(-)$1	1	206	221	10.4608
)))).)..).)))))	chr19:39340321-39340607(-)$1	1	247	262	9.0002
....)))...)))))	chr11:122929526-122929781(-)$1	1	239	254	9.4191
).)))))...)))))	chr3:186502480-186502745(+)$1	1	206	221	12.8646
..)))))...)))))	chrX:152953830-152954113(+)$1	1	238	253	12.8514
)))))))...)))))	chr16:30081050-30081284(+)$1	1	208	223	10.7026
..)))))...)))))	chr16:88870148-88870432(+)$1	1	141	156	12.5272
))))))).))).)))	chr7:5569711-5569979(-)$1	1	233	248	8.8968
))..))))).)))))	chr2:70314573-70314940(+)$1	1	172	187	10.6015
...))))...).)))	chr6:31802962-31803194(+)$1	1	214	229	8.7858
).))))).))))).)	chr1:200378970-200379196(-)$1	1	187	202	9.1963
.))))))..)))..)	chr5:79946950-79947194(-)$1	1	141	156	8.1929
)))))))...)))).	chr8:144940520-144940795(-)$1	1	250	265	8.8748
)..))).)).)))))	chr19:41111295-41111612(+)$1	1	169	184	7.3875
).)))))...)))))	chr19:47290824-47291110(-)$1	1	263	278	11.6153
)))))))...)))).	chr6:133136345-133136614(+)$1	1	161	176	10.8883
)))).)).).)))))	chr6:37138064-37138340(+)$1	1	241	256	9.0288

#PSSM
: : 0.34	B : 0.13	C : 0.08	? : 0.04	E : 0.04	A : 0.04	J : 0.04	H : 0.04	Y : 0.04	D : 0.04	c : 0.04	e : 0.04	I : 0.04	
: : 0.39	} : 0.17	F : 0.08	D : 0.08	B : 0.08	J : 0.04	Y : 0.04	C : 0.04	I : 0.04	
E : 0.56	: : 0.13	F : 0.08	D : 0.08	J : 0.04	Y : 0.04	I : 0.04	
E : 0.56	D : 0.13	F : 0.08	J : 0.04	: : 0.04	Y : 0.04	C : 0.04	I : 0.04	
E : 0.60	D : 0.13	F : 0.08	} : 0.08	C : 0.08	
E : 0.60	F : 0.08	C : 0.08	D : 0.08	B : 0.08	A : 0.04	
E : 0.60	F : 0.08	D : 0.08	B : 0.08	Y : 0.04	C : 0.04	} : 0.04	
Z : 0.47	} : 0.21	Y : 0.17	~ : 0.04	E : 0.04	B : 0.04	
Z : 0.47	C : 0.13	Y : 0.13	A : 0.08	E : 0.08	~ : 0.04	B : 0.04	
Z : 0.47	} : 0.17	C : 0.13	E : 0.13	~ : 0.04	A : 0.04	
E : 0.56	C : 0.17	D : 0.08	~ : 0.04	A : 0.04	B : 0.04	F : 0.04	
E : 0.56	D : 0.08	F : 0.08	Y : 0.08	} : 0.08	B : 0.04	C : 0.04	
E : 0.56	F : 0.13	Y : 0.13	D : 0.08	C : 0.08	
E : 0.56	D : 0.13	F : 0.13	C : 0.04	} : 0.04	Y : 0.04	A : 0.04	
E : 0.47	F : 0.13	D : 0.08	} : 0.08	G : 0.04	Y : 0.04	Z : 0.04	C : 0.04	B : 0.04	

#score	233.5701609610478
#seq	23
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF080PGT_BUD13_UTR_m2_run1.txt

#BEAR
ccfffffftttttttttttffffff::	chr8:19700221-19700507(+)$1	286	216	243	21.1371
###eeeeeyyyyyyyyyyyyyyyyeee	chr14:73577508-73577823(+)$1	315	164	191	20.8435
iiiiiiiitttttttttttiiiiiiii	chr12:133310945-133311230(-)$1	285	252	279	23.7302
d"""dddduuuuuuuuuuuudddd]dd	chr15:64421983-64422279(+)$1	296	100	127	24.0433
b"""ddddtttttttttttdddd333b	chr19:49120537-49120810(-)$1	273	28	55	24.9977
bgggggggtttttttttttggggggg]	chr17:45206750-45207025(-)$1	275	166	193	23.6941
"""bb[bbtttttttttttbbbb4444	chr6:31590379-31590586(+)$1	207	148	175	23.1467
"""bbcccwwwwwwwwwwwwwwccc]b	chr8:134260874-134261168(-)$1	294	153	180	20.9720
========uuuuuuuuuuuu=======	chr6:71200607-71200894(+)$1	287	242	269	23.9335
eeeyyyyyyyyyyyyyyyyeeeeeccc	chr9:117027108-117027325(+)$1	217	58	85	20.4462
###eeeeeuuuuuuuuuuuueeeee33	chr11:800954-801196(-)$1	242	188	215	24.6134
===!!cccuuuuuuuuuuuuccc333=	chr12:56490395-56490664(+)$1	269	218	245	24.6345
===!!cccuuuuuuuuuuuuccc333=	chr12:56490488-56490743(+)$1	255	125	152	24.6345
cddddccctttttttttttccc]dddd	chr1:8482715-8482978(-)$1	263	193	220	23.6043
dddeeeeeuuuuuuuuuuuueeeeeff	chr20:61545627-61545845(-)$1	218	37	64	23.2077
!!fffffftttttttttttffffff]e	chr17:80193564-80193845(+)$1	281	6	33	23.0545
:a[cccwwwwwwwwwwwwwwccc]a::	chr14:35099006-35099392(-)$1	386	157	184	19.7317
ddddddddtttttttttttdddd]ddd	chr17:27420262-27420516(-)$1	254	62	89	23.9160
eeeeebbyyyyyyyyyyyyyyyybb]e	chr8:37595284-37595707(+)$1	423	84	111	20.1452
:gggggggtttttttttttggggggg:	chr14:21546390-21546647(+)$1	257	143	170	22.2697
e"""cccuuuuuuuuuuuuccc4444e	chr2:73471531-73471818(+)$1	287	6	33	24.1412
d[a[ddddtttttttttttdddd]a]d	chr16:11991747-11992010(-)$1	263	36	63	24.8965
"bb[ddddtttttttttttdddd]bb3	chr5:118829368-118829649(+)$1	281	219	246	23.9978
ddddddduuuuuuuuuuuudddd]ddd	chr2:120438280-120438561(+)$1	281	99	126	23.2897
d!!eeeeevvvvvvvvvvvvveeeee6	chr3:183962395-183962652(-)$1	257	188	215	22.7874
ddd[bbuuuuuuuuuuuubb]dddd22	chr16:75263771-75264048(-)$1	277	124	151	20.0428
ccceeeeettttttttttteeeee]cc	chr2:177134279-177134577(+)$1	298	225	252	24.2133
bb"""ccctttttttttttcccbb]cc	chr19:1271994-1272232(+)$1	238	41	68	23.5223
!eeeeewwwwwwwwwwwwwweeeee]c	chr4:10117715-10118010(-)$1	295	76	103	21.9433
b"""ddddtttttttttttdddd]bb3	chr16:28845522-28845770(+)$1	248	194	221	24.5971
ggggggguuuuuuuuuuuuggggggg]	chr2:27884865-27885148(-)$1	283	2	29	23.2573
$$$eeeeettttttttttteeeeeccc	chr16:89795588-89795842(+)$1	254	173	200	24.1962
'ddddwwwwwwwwwwwwwwdddd8888	chr12:46760933-46761169(-)$1	236	149	176	19.0822
$$$eeeeettttttttttteeeee555	chr17:73662495-73662754(-)$1	259	153	180	22.3684
ddd!!bbvvvvvvvvvvvvvbb22ddd	chr9:6792936-6793191(+)$1	255	8	35	21.5595
eeeeeeeettttttttttteeeee22e	chr12:6977857-6978156(+)$1	299	235	262	23.7295
!!eeeeevvvvvvvvvvvvveeeee22	chr16:57241837-57242106(+)$1	269	56	83	23.5503
gggggggvvvvvvvvvvvvvggggggg	chr10:6138856-6139119(+)$1	263	76	103	22.9273
c[ffffffuuuuuuuuuuuuffffff]	chr3:50099355-50099638(+)$1	283	176	203	22.3497
eeeee[auuuuuuuuuuuua]eeeeed	chr3:184081041-184081339(+)$1	298	27	54	23.2028
ca[dddduuuuuuuuuuuudddd]a]c	chr17:8166166-8166411(+)$1	245	98	125	24.1558
"""eeeeeuuuuuuuuuuuueeeee==	chr12:120109958-120110257(+)$1	299	264	291	24.3735
fdddd[bbtttttttttttbbdddd::	chr3:9516635-9516880(+)$1	245	163	190	21.4036
%gggggggtttttttttttggggggg7	chr5:72794374-72794625(+)$1	251	64	91	22.9940
eeee[abbvvvvvvvvvvvvvbb]a]e	chr14:74757061-74757318(-)$1	257	9	36	21.7593
!bb[ddddtttttttttttdddd]bb2	chr16:249055-249340(-)$1	285	49	76	23.7740
hh"""ccctttttttttttccc4444h	chr16:22086635-22086945(+)$1	310	118	145	23.9961
ccc[ddddtttttttttttddddcccF	chr17:7466256-7466531(+)$1	275	199	226	23.9684
d[ayyyyyyyyyyyyyyyya]ddddff	chr9:139700964-139701233(+)$1	269	56	83	20.5686
gggggggvvvvvvvvvvvvvggggggg	chr3:9516159-9516405(+)$1	246	147	174	22.9273
eeeeddddvvvvvvvvvvvvvdddd::	chr16:72146208-72146434(+)$1	226	23	50	21.0770
dd!!ddddtttttttttttdddd]ddd	chr11:76506539-76506824(+)$1	285	73	100	24.5031
$$$$ddddtttttttttttddddccce	chr16:16255237-16255476(-)$1	239	184	211	24.0154
hhhhhh[attttttttttta]hhhhhh	chr14:24738257-24738526(-)$1	269	73	100	21.7428
b[ddddbbtttttttttttbb]dddd]	chr11:129992098-129992360(+)$1	262	187	214	22.9716
dccccccvvvvvvvvvvvvvccc22cc	chr12:122992859-122993106(-)$1	247	157	184	22.8588
CCeeeeeuuuuuuuuuuuueeeeeccc	chr16:87364465-87364684(-)$1	219	62	89	21.5918
:ccc[ccctttttttttttccc]ccc:	chr5:137909411-137909701(-)$1	290	141	168	22.5795

#otherMatches

#Seq PSSM
GGUAAGCUUAAAGUUGAUUAGCUUGAA	chr8:19700221-19700507(+)$1	286	216	243	21.1371
AAAGCCUUGUCUGAAACCUACUCUGAG	chr14:73577508-73577823(+)$1	315	164	191	20.8435
CACGUCUGGUAAGCAUGUGCAGGCGUG	chr12:133310945-133311230(-)$1	285	252	279	23.7302
ACUUGCCAUCCCUGCCUUCUUGGUCUU	chr15:64421983-64422279(+)$1	296	100	127	24.0433
UAAAGAUUAUUUUAGUCCAGAUCAUCA	chr19:49120537-49120810(-)$1	273	28	55	24.9977
AGGCUUUGGAUACCCUAAACAAAGCCA	chr17:45206750-45207025(-)$1	275	166	193	23.6941
GCCUGCAGGACCCAACAUACUCAAUGA	chr6:31590379-31590586(+)$1	207	148	175	23.1467
GCCGGCGCGACCUGGAGAUUGAGCGAC	chr8:134260874-134261168(-)$1	294	153	180	20.9720
AUAUUUUGUCUAUGAAAACUUAAAGUA	chr6:71200607-71200894(+)$1	287	242	269	23.9335
CACCCUCUCCCACCUUCACGUGCUCUG	chr9:117027108-117027325(+)$1	217	58	85	20.4462
CUUCCAGGUCACACACUUCUCCUGGUC	chr11:800954-801196(-)$1	242	188	215	24.6134
UUCAAGCUGUGACAGAUGUAAGUGAAG	chr12:56490395-56490664(+)$1	269	218	245	24.6345
UUCAAGCUGUGACAGAUGUAAGUGAAG	chr12:56490488-56490743(+)$1	255	125	152	24.6345
UGAGUACAAUUGGACUUUAUGUAACUU	chr1:8482715-8482978(-)$1	263	193	220	23.6043
GAUACGUAGUUUACUUAAGAUAUGUAA	chr20:61545627-61545845(-)$1	218	37	64	23.2077
UCCCAGGAGGUAAUCUGAGUCCUGGCC	chr17:80193564-80193845(+)$1	281	6	33	23.0545
UGUCACUAAUGUCUCCCUUUGUGUCUC	chr14:35099006-35099392(-)$1	386	157	184	19.7317
GUACUCCAGUUAAAACAGAUGGAGGUG	chr17:27420262-27420516(-)$1	254	62	89	23.9160
UGUGGCCUUUUCUCCUGCACGUUGGAC	chr8:37595284-37595707(+)$1	423	84	111	20.1452
GGCAGUGGGAAUGCCCAAGCCACUGCA	chr14:21546390-21546647(+)$1	257	143	170	22.2697
UAAAGAUACAAAAGGUGAAGUUGGAGA	chr2:73471531-73471818(+)$1	287	6	33	24.1412
UCUGUUUUUACUGCAUAUUAAAAGAUA	chr16:11991747-11992010(-)$1	263	36	63	24.8965
ACUGGAAGAAGAUCUGUGACUUUGAGA	chr5:118829368-118829649(+)$1	281	219	246	23.9978
UGGCUGACUUCUCUUUUUCUUGGCCCA	chr2:120438280-120438561(+)$1	281	99	126	23.2897
GUUACUGUUUCUUCUCCUCACACAGUU	chr3:183962395-183962652(-)$1	257	188	215	22.7874
CAGCUGAAGCAGUUUGAACGACUGGAA	chr16:75263771-75264048(-)$1	277	124	151	20.0428
CCGGCCCGGAUGGUGGAGGCGGGCACG	chr2:177134279-177134577(+)$1	298	225	252	24.2133
GUUAUGACAGUUACGGUAAGUCACACU	chr19:1271994-1272232(+)$1	238	41	68	23.5223
CGGGGCUCCUUCUCCCUUCUGUCCCCG	chr4:10117715-10118010(-)$1	295	76	103	21.9433
CAAGUACCGGGGAGCAAAAGGUGAGCA	chr16:28845522-28845770(+)$1	248	194	221	24.5971
caaggaucucacauuaucagucuuuga	chr2:27884865-27885148(-)$1	283	2	29	23.2573
GUUGGGCGACCUAGACACCCGCCUGUG	chr16:89795588-89795842(+)$1	254	173	200	24.1962
CAAUGUAUACCUAUCAUUUUAUUUCUC	chr12:46760933-46761169(-)$1	236	149	176	19.0822
GAGCGGCGAGUCCGGAGUACGCUGAAG	chr17:73662495-73662754(-)$1	259	153	180	22.3684
CUGUUGACCCUACUGUCUUCUCUCCAG	chr9:6792936-6793191(+)$1	255	8	35	21.5595
GCUGUGGCUGCGCAGAACUGCUACAAA	chr12:6977857-6978156(+)$1	299	235	262	23.7295
CCUCCAGUUUGAAUUCUUAUUUGGAAU	chr16:57241837-57242106(+)$1	269	56	83	23.5503
UUUCAUGAUACUUAUUUUAACAUGAAA	chr10:6138856-6139119(+)$1	263	76	103	22.9273
AGUGACGAGGGUAAGAGGAAUUGUUAA	chr3:50099355-50099638(+)$1	283	176	203	22.3497
UCGGGACGGAAGUUAAGUAGCCCCGAG	chr3:184081041-184081339(+)$1	298	27	54	23.2028
CCGUCUACAGGAUUGGAGUUGGAGGUG	chr17:8166166-8166411(+)$1	245	98	125	24.1558
UUAUCUGGGUCCUUCAACAACUGGAGU	chr12:120109958-120110257(+)$1	299	264	291	24.3735
AAAGGAGCAACAGUUUACAGCCCUUCC	chr3:9516635-9516880(+)$1	245	163	190	21.4036
GUUCCCUGAAGGAGCGAGACAGGGAGG	chr5:72794374-72794625(+)$1	251	64	91	22.9940
gucagcccauaauaAUCCACAGGUGGU	chr14:74757061-74757318(-)$1	257	9	36	21.7593
UUGUGGUGGCAGUUCUAUAUACCUCAC	chr16:249055-249340(-)$1	285	49	76	23.7740
UUCCCUGGACAGGCCAAACCCACUAAA	chr16:22086635-22086945(+)$1	310	118	145	23.9961
CCCAGCUUACUCAAGUCCCAGGCGGGA	chr17:7466256-7466531(+)$1	275	199	226	23.9684
CGCACAGCAACAUGACCAAGGGCCAGG	chr9:139700964-139701233(+)$1	269	56	83	20.5686
CAUGAGCCGAGUCCUGUACAGUUCAUG	chr3:9516159-9516405(+)$1	246	147	174	22.9273
CCUGGGGCUCUGCAUCCUCCUGCCCUC	chr16:72146208-72146434(+)$1	226	23	50	21.0770
AUCUGGUGCAUUCAUUCCUCACCUGUG	chr11:76506539-76506824(+)$1	285	73	100	24.5031
ACUCCCCACAUCCCCAAACUGGGCUUG	chr16:16255237-16255476(-)$1	239	184	211	24.0154
CUCCAAGGAGAGGGUAGGGUGUUGGAG	chr14:24738257-24738526(-)$1	269	73	100	21.7428
ugguggaggaCCGAGAUUACUACUAUG	chr11:129992098-129992360(+)$1	262	187	214	22.9716
CAUCAGGAACACAAGUAACACCUCAGA	chr12:122992859-122993106(-)$1	247	157	184	22.8588
GGACCGCGUGAGAAUUGAAGCGGUGGG	chr16:87364465-87364684(-)$1	219	62	89	21.5918
ACUGUUCUAAAUGUCUUACAGAUCAGA	chr5:137909411-137909701(-)$1	290	141	168	22.5795

#DB
))((((((...........))))))..	chr8:19700221-19700507(+)$1	1	216	243	21.1371
...(((((................)))	chr14:73577508-73577823(+)$1	1	164	191	20.8435
((((((((...........))))))))	chr12:133310945-133311230(-)$1	1	252	279	23.7302
(...((((............)))).))	chr15:64421983-64422279(+)$1	1	100	127	24.0433
(...((((...........))))...)	chr19:49120537-49120810(-)$1	1	28	55	24.9977
((((((((...........))))))).	chr17:45206750-45207025(-)$1	1	166	193	23.6941
...((.((...........))))....	chr6:31590379-31590586(+)$1	1	148	175	23.1467
...(((((..............))).)	chr8:134260874-134261168(-)$1	1	153	180	20.9720
((((((((............)))))))	chr6:71200607-71200894(+)$1	1	242	269	23.9335
(((................))))))))	chr9:117027108-117027325(+)$1	1	58	85	20.4462
...(((((............)))))..	chr11:800954-801196(-)$1	1	188	215	24.6134
(((..(((............)))...)	chr12:56490395-56490664(+)$1	1	218	245	24.6345
(((..(((............)))...)	chr12:56490488-56490743(+)$1	1	125	152	24.6345
((((((((...........))).))))	chr1:8482715-8482978(-)$1	1	193	220	23.6043
)))(((((............)))))((	chr20:61545627-61545845(-)$1	1	37	64	23.2077
..((((((...........)))))).)	chr17:80193564-80193845(+)$1	1	6	33	23.0545
.(.(((..............))).)..	chr14:35099006-35099392(-)$1	1	157	184	19.7317
((((((((...........)))).)))	chr17:27420262-27420516(-)$1	1	62	89	23.9160
(((((((................)).)	chr8:37595284-37595707(+)$1	1	84	111	20.1452
.(((((((...........))))))).	chr14:21546390-21546647(+)$1	1	143	170	22.2697
(...(((............)))....)	chr2:73471531-73471818(+)$1	1	6	33	24.1412
(.(.((((...........)))).).)	chr16:11991747-11992010(-)$1	1	36	63	24.8965
.((.((((...........)))).)).	chr5:118829368-118829649(+)$1	1	219	246	23.9978
(((((((............)))).)))	chr2:120438280-120438561(+)$1	1	99	126	23.2897
(..(((((.............))))).	chr3:183962395-183962652(-)$1	1	188	215	22.7874
(((.((............)).))))..	chr16:75263771-75264048(-)$1	1	124	151	20.0428
((((((((...........))))).))	chr2:177134279-177134577(+)$1	1	225	252	24.2133
((...(((...........))))).))	chr19:1271994-1272232(+)$1	1	41	68	23.5223
.(((((..............))))).)	chr4:10117715-10118010(-)$1	1	76	103	21.9433
(...((((...........)))).)).	chr16:28845522-28845770(+)$1	1	194	221	24.5971
(((((((............))))))).	chr2:27884865-27885148(-)$1	1	2	29	23.2573
...(((((...........))))))))	chr16:89795588-89795842(+)$1	1	173	200	24.1962
.((((..............))))....	chr12:46760933-46761169(-)$1	1	149	176	19.0822
...(((((...........)))))...	chr17:73662495-73662754(-)$1	1	153	180	22.3684
(((..((.............))..)))	chr9:6792936-6793191(+)$1	1	8	35	21.5595
((((((((...........)))))..)	chr12:6977857-6978156(+)$1	1	235	262	23.7295
..(((((.............)))))..	chr16:57241837-57242106(+)$1	1	56	83	23.5503
(((((((.............)))))))	chr10:6138856-6139119(+)$1	1	76	103	22.9273
(.((((((............)))))).	chr3:50099355-50099638(+)$1	1	176	203	22.3497
(((((.(............).)))))(	chr3:184081041-184081339(+)$1	1	27	54	23.2028
((.((((............)))).).)	chr17:8166166-8166411(+)$1	1	98	125	24.1558
...(((((............)))))))	chr12:120109958-120110257(+)$1	1	264	291	24.3735
)((((.((...........))))))..	chr3:9516635-9516880(+)$1	1	163	190	21.4036
.(((((((...........))))))).	chr5:72794374-72794625(+)$1	1	64	91	22.9940
((((.(((.............)).).)	chr14:74757061-74757318(-)$1	1	9	36	21.7593
.((.((((...........)))).)).	chr16:249055-249340(-)$1	1	49	76	23.7740
((...(((...........)))....)	chr16:22086635-22086945(+)$1	1	118	145	23.9961
(((.((((...........))))))))	chr17:7466256-7466531(+)$1	1	199	226	23.9684
(.(................).))))))	chr9:139700964-139701233(+)$1	1	56	83	20.5686
(((((((.............)))))))	chr3:9516159-9516405(+)$1	1	147	174	22.9273
))))((((.............))))..	chr16:72146208-72146434(+)$1	1	23	50	21.0770
((..((((...........)))).)))	chr11:76506539-76506824(+)$1	1	73	100	24.5031
....((((...........))))))))	chr16:16255237-16255476(-)$1	1	184	211	24.0154
((((((.(...........).))))))	chr14:24738257-24738526(-)$1	1	73	100	21.7428
(.((((((...........)).)))).	chr11:129992098-129992360(+)$1	1	187	214	22.9716
(((((((.............)))..))	chr12:122992859-122993106(-)$1	1	157	184	22.8588
(((((((............)))))(((	chr16:87364465-87364684(-)$1	1	62	89	21.5918
.(((.(((...........))).))).	chr5:137909411-137909701(-)$1	1	141	168	22.5795

#PSSM
d : 0.18	e : 0.12	c : 0.10	b : 0.08	" : 0.06	! : 0.06	= : 0.05	: : 0.05	g : 0.05	$ : 0.05	# : 0.03	h : 0.03	i : 0.01	' : 0.01	f : 0.01	% : 0.01	C : 0.01	
d : 0.15	" : 0.12	e : 0.12	g : 0.10	c : 0.08	[ : 0.06	= : 0.05	! : 0.05	b : 0.05	$ : 0.05	# : 0.03	a : 0.03	h : 0.03	i : 0.01	C : 0.01	
" : 0.15	e : 0.15	d : 0.15	g : 0.10	c : 0.06	f : 0.05	= : 0.05	$ : 0.05	# : 0.03	[ : 0.03	a : 0.03	b : 0.03	! : 0.03	i : 0.01	h : 0.01	
e : 0.27	d : 0.12	" : 0.10	g : 0.10	[ : 0.08	! : 0.06	f : 0.05	c : 0.05	b : 0.03	y : 0.03	i : 0.01	= : 0.01	$ : 0.01	h : 0.01	
d : 0.29	e : 0.24	g : 0.10	f : 0.05	b : 0.05	! : 0.05	c : 0.05	y : 0.03	" : 0.03	[ : 0.03	i : 0.01	= : 0.01	h : 0.01	
d : 0.24	e : 0.20	c : 0.17	g : 0.10	f : 0.05	[ : 0.05	b : 0.05	y : 0.03	i : 0.01	= : 0.01	w : 0.01	a : 0.01	h : 0.01	
d : 0.22	e : 0.18	c : 0.15	g : 0.10	b : 0.10	f : 0.05	w : 0.05	y : 0.03	i : 0.01	= : 0.01	u : 0.01	a : 0.01	[ : 0.01	
d : 0.18	e : 0.15	c : 0.12	u : 0.12	v : 0.08	b : 0.06	f : 0.05	g : 0.05	y : 0.05	w : 0.05	i : 0.01	= : 0.01	a : 0.01	
t : 0.46	u : 0.25	v : 0.13	y : 0.06	w : 0.06	
t : 0.46	u : 0.25	v : 0.13	y : 0.06	w : 0.06	
t : 0.46	u : 0.25	v : 0.13	y : 0.06	w : 0.06	
t : 0.46	u : 0.25	v : 0.13	y : 0.06	w : 0.06	
t : 0.46	u : 0.25	v : 0.13	y : 0.06	w : 0.06	
t : 0.46	u : 0.25	v : 0.13	y : 0.06	w : 0.06	
t : 0.46	u : 0.25	v : 0.13	y : 0.06	w : 0.06	
t : 0.46	u : 0.25	v : 0.13	y : 0.06	w : 0.06	
t : 0.46	u : 0.25	v : 0.13	y : 0.06	w : 0.06	
t : 0.46	u : 0.25	v : 0.13	y : 0.06	w : 0.06	
t : 0.46	u : 0.24	v : 0.13	y : 0.06	w : 0.06	b : 0.01	
d : 0.20	u : 0.13	v : 0.13	e : 0.10	c : 0.08	g : 0.06	b : 0.06	w : 0.05	a : 0.05	f : 0.03	y : 0.03	i : 0.01	
d : 0.22	e : 0.18	c : 0.15	g : 0.10	b : 0.06	] : 0.06	f : 0.05	v : 0.05	y : 0.03	i : 0.01	w : 0.01	= : 0.01	
d : 0.29	e : 0.22	c : 0.15	g : 0.10	f : 0.05	b : 0.05	y : 0.03	i : 0.01	w : 0.01	= : 0.01	h : 0.01	] : 0.01	
d : 0.31	e : 0.22	g : 0.10	c : 0.08	f : 0.05	b : 0.05	y : 0.03	] : 0.03	4 : 0.03	i : 0.01	= : 0.01	2 : 0.01	h : 0.01	
e : 0.22	] : 0.17	d : 0.12	g : 0.10	c : 0.06	f : 0.05	3 : 0.05	4 : 0.05	b : 0.03	2 : 0.03	y : 0.01	i : 0.01	= : 0.01	8 : 0.01	h : 0.01	
d : 0.17	e : 0.13	c : 0.12	g : 0.10	a : 0.06	b : 0.06	f : 0.05	] : 0.05	3 : 0.05	4 : 0.05	2 : 0.03	i : 0.01	= : 0.01	8 : 0.01	5 : 0.01	h : 0.01	
c : 0.15	d : 0.12	] : 0.12	g : 0.10	: : 0.06	3 : 0.06	e : 0.05	4 : 0.05	f : 0.05	b : 0.05	2 : 0.05	= : 0.03	i : 0.01	8 : 0.01	5 : 0.01	h : 0.01	
d : 0.13	c : 0.13	e : 0.12	: : 0.10	] : 0.06	= : 0.06	3 : 0.05	2 : 0.05	b : 0.03	f : 0.03	g : 0.03	h : 0.03	i : 0.01	4 : 0.01	6 : 0.01	8 : 0.01	5 : 0.01	7 : 0.01	F : 0.01	

#score	1327.6736790267444
#seq	58
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF700XBC_FMR1_transcript_m2_run1.txt

#BEAR
ccc!!cccwwwwwwwwwwwwwwccccc	chr2:96950904-96951146(-)$1	242	12	39	24.0202
c[dddd[bbtttttttttttbb]dddd	chr5:140998385-140998634(-)$1	249	28	55	21.6694
eeeeecccuuuuuuuuuuuuccc]eee	chr1:113632822-113633036(+)$1	214	136	163	24.7060
gggggggvvvvvvvvvvvvvggggggg	chr10:75842157-75842403(+)$1	246	161	188	24.5781
gggg[bbvvvvvvvvvvvvvbb]gggg	chr3:47866447-47866720(+)$1	273	16	43	24.0944
!bb[eeeeettttttttttteeeee]b	chr10:75832412-75832650(+)$1	238	133	160	21.9795
::ffffffuuuuuuuuuuuuffffffg	chr4:83345625-83345893(-)$1	268	37	64	22.0719
d!!fffffftttttttttttffffffd	chrX:47072328-47072590(+)$1	262	93	120	22.1916
dddd[cccwwwwwwwwwwwwwwccc]d	chr17:78341694-78341971(+)$1	277	177	204	23.3885
fff!!bbwwwwwwwwwwwwwwbb22ff	chr20:48706424-48706783(-)$1	359	94	121	22.3756
iiiiicccuuuuuuuuuuuuccc]iii	chr19:49994998-49995225(+)$1	227	126	153	25.3666
[dddd[bbuuuuuuuuuuuubbddddf	chr17:57758956-57759209(+)$1	253	121	148	23.3876
cc[eeeeevvvvvvvvvvvvveeeee]	chrX:53245173-53245407(-)$1	234	180	207	23.9353
bb!!dddduuuuuuuuuuuudddd22b	chr19:10260118-10260378(-)$1	260	219	246	23.1695
ffff[cccuuuuuuuuuuuucccffff	chrX:117629773-117630046(+)$1	273	90	117	24.7694
hhh!!cccvvvvvvvvvvvvvccc333	chr16:29808174-29808456(+)$1	282	75	102	24.8675
ddd!!cccuuuuuuuuuuuucccdddd	chr9:35710748-35710983(-)$1	235	171	198	24.6889
eeeee[bbuuuuuuuuuuuubb333ee	chr16:70582181-70582438(+)$1	257	63	90	23.6581
[affffffuuuuuuuuuuuuffffff]	chrX:153592631-153592840(-)$1	209	94	121	24.0345
!!bb!!ccctttttttttttccc22bb	chr9:35060764-35061021(-)$1	257	115	142	22.6255
dddd[cccyyyyyyyyyyyyyyyyccc	chr17:1562614-1562864(-)$1	250	129	156	20.7945
hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr3:184045273-184045527(+)$1	254	184	211	22.2678
Bbb[dddduuuuuuuuuuuudddd]bb	chr14:104152454-104152716(+)$1	262	26	53	22.2655
#eeeeeyyyyyyyyyyyyyyyyeeeee	chr1:156235806-156236078(-)$1	272	187	214	20.9311
hhhhhcccvvvvvvvvvvvvvccc333	chr3:33840062-33840330(+)$1	268	170	197	24.3391
BBgggggggtttttttttttggggggg	chr15:91489758-91490078(+)$1	320	16	43	21.4083
gggg!!avvvvvvvvvvvvva22gggg	chr6:31600541-31600765(+)$1	224	181	208	24.2642
d:ffffffuuuuuuuuuuuuffffffE	chr1:19420425-19420649(-)$1	224	186	213	21.7895
gggggggvvvvvvvvvvvvvggggggg	chr3:184025633-184025884(+)$1	251	209	236	24.5781
a!!eeeeewwwwwwwwwwwwwweeeee	chr3:58139084-58139360(+)$1	276	182	209	23.0791
eeee!!ccctttttttttttccc]eee	chrX:153581629-153581850(-)$1	221	24	51	23.3938
eebbddddwwwwwwwwwwwwwwdddd]	chr4:1729799-1730114(+)$1	315	185	212	22.3921
ffffffwwwwwwwwwwwwwwfffffff	chr5:137895620-137895872(-)$1	252	118	145	22.1821
cdddd[bbuuuuuuuuuuuubb]dddd	chr14:102463436-102463688(+)$1	252	146	173	23.2076
####dddduuuuuuuuuuuuddddfff	chrX:53559997-53560248(-)$1	251	108	135	23.5768
dddeeeeeuuuuuuuuuuuueeeee]d	chr14:21668446-21668715(-)$1	269	62	89	23.4159
===eeeeevvvvvvvvvvvvveeeee]	chr1:155629030-155629342(-)$1	312	125	152	23.9649
[bb[ddddwwwwwwwwwwwwwwdddd]	chr2:96949998-96950215(-)$1	217	97	124	22.9216
gggg[cccuuuuuuuuuuuucccgggg	chr3:25706108-25706370(-)$1	262	157	184	25.7080
%ffffffvvvvvvvvvvvvvffffff]	chrX:153588257-153588469(-)$1	212	139	166	22.8569
:ggggggguuuuuuuuuuuuggggggg	chrX:153585738-153585984(-)$1	246	84	111	24.0349
[ccc[bbwwwwwwwwwwwwwwbb]ccc	chr9:114689983-114690240(+)$1	257	72	99	22.9608
ee!!ddddwwwwwwwwwwwwwwdddd2	chr1:28564511-28564815(+)$1	304	242	269	22.7966
hhgggggggtttttttttttggggggg	chr1:19494435-19494691(-)$1	256	90	117	22.9334
ggggggwwwwwwwwwwwwwwggggggg	chr2:216973976-216974244(+)$1	268	81	108	23.5000
cc"""ccctttttttttttccc4444c	chr11:62289983-62290236(-)$1	253	83	110	22.7869
!!ffffffvvvvvvvvvvvvvffffff	chr9:35706170-35706437(-)$1	267	171	198	23.9343
ddbbddddwwwwwwwwwwwwwwdddd]	chr5:10263262-10263500(+)$1	238	102	129	22.3279
"gggggggwwwwwwwwwwwwwwggggg	chrX:153595013-153595237(-)$1	224	162	189	23.9893
bb!!dddduuuuuuuuuuuudddd22b	chr6:119510776-119511083(-)$1	307	258	285	23.1695
eeecccxxxxxxxxxxxxxxxccc333	chr6:167364249-167364528(-)$1	279	218	245	18.9375
ffff:cccuuuuuuuuuuuuccc:ddd	chr7:30671820-30672070(+)$1	250	162	189	22.3181
gggg[ccctttttttttttcccggggg	chr2:96944327-96944548(-)$1	221	16	43	23.8977
hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr11:9406239-9406495(+)$1	256	99	126	22.2678
!!gggggggtttttttttttggggggg	chr21:16436963-16437408(-)$1	445	60	87	23.3911

#otherMatches

#Seq PSSM
AGUCCGUCUCUUCUUCCUUCUUGAUAC	chr2:96950904-96951146(-)$1	242	12	39	24.0202
CAGCCCGGCAUGCUAAUGAGGCGGGGC	chr5:140998385-140998634(-)$1	249	28	55	21.6694
CAAAAGUGGGAGACUUUUUACACUUUU	chr1:113632822-113633036(+)$1	214	136	163	24.7060
GCUUUUCUGAUCAAUACAACGAGAAGC	chr10:75842157-75842403(+)$1	246	161	188	24.5781
ccggccgcUCCCGUUCUCUUCGCCCGG	chr3:47866447-47866720(+)$1	273	16	43	24.0944
GCACCGAGUGAUGUUGGUGAACUCGAU	chr10:75832412-75832650(+)$1	238	133	160	21.9795
UCAAUGUGGAUUUGUUUAUACACAUUU	chr4:83345625-83345893(-)$1	268	37	64	22.0719
AUUGCCACGACCACAGCAGCCGUGGUU	chrX:47072328-47072590(+)$1	262	93	120	22.1916
GCAGAUGAUAUGCCCCUACUGUUUAAC	chr17:78341694-78341971(+)$1	277	177	204	23.3885
uuggacuaaaaaaucaaagaaggcaca	chr20:48706424-48706783(-)$1	359	94	121	22.3756
UGCCCUGGAAUGUACGGGACCCAGGGG	chr19:49994998-49995225(+)$1	227	126	153	25.3666
UCUGGAGUCAACUUGCAAAAGCCCAGU	chr17:57758956-57759209(+)$1	253	121	148	23.3876
ACCUGGGGAGAAAAGUCAGGGCCCUAA	chrX:53245173-53245407(-)$1	234	180	207	23.9353
CAAAGCCCCCUCCGAAAACUGGGCCAU	chr19:10260118-10260378(-)$1	260	219	246	23.1695
gggccggggcAGUGAGUCCACCCGCCC	chrX:117629773-117630046(+)$1	273	90	117	24.7694
CUCGUCGUCCACCUCCAGCUCGCGUAA	chr16:29808174-29808456(+)$1	282	75	102	24.8675
UGUAAUGGAGAACUCAAAGGUCAGCAC	chr9:35710748-35710983(-)$1	235	171	198	24.6889
AUCUGUGGCUUCCCUCUUCUCCUGUCA	chr16:70582181-70582438(+)$1	257	63	90	23.6581
CGCUAGGUGAAGGCACGUGGGCCUGGA	chrX:153592631-153592840(-)$1	209	94	121	24.0345
GAGUAACCCAUCAGCACUGCGGGAAAC	chr9:35060764-35061021(-)$1	257	115	142	22.6255
UGGACUACACCACCGACAACAUGAGUA	chr17:1562614-1562864(-)$1	250	129	156	20.7945
UCAUUGAGGAAUAUCUCCAUCUCAAUG	chr3:184045273-184045527(+)$1	254	184	211	22.2678
UGCUUUUCUCUACUAAUCUUGAAGUGC	chr14:104152454-104152716(+)$1	262	26	53	22.2655
AGACUCGGAAAUGAAUAGCCAGGAGUC	chr1:156235806-156236078(-)$1	272	187	214	20.9311
AUCUCGGUGCAGCUGAAAAAGACCUCA	chr3:33840062-33840330(+)$1	268	170	197	24.3391
GGGAAGGGAGGGAAGAAGAGUCCCUUU	chr15:91489758-91490078(+)$1	320	16	43	21.4083
CCAGGACGAGGCGACAAGAGGAGCUGG	chr6:31600541-31600765(+)$1	224	181	208	24.2642
ACCAUACUGCAACUUUGAUAAGUAUGU	chr1:19420425-19420649(-)$1	224	186	213	21.7895
GGCUCUGACUCCACCCUUUCCAGGGCC	chr3:184025633-184025884(+)$1	251	209	236	24.5781
GCAGCCCCUUCCAGUUCACCGUGGGGC	chr3:58139084-58139360(+)$1	276	182	209	23.0791
GGUGACGACUCCAUGCGUAUGUCCCAC	chrX:153581629-153581850(-)$1	221	24	51	23.3938
GAUGGCACUCAGACCCUUACCUGUGCA	chr4:1729799-1730114(+)$1	315	185	212	22.3921
UGGCAGAGCCCCAAGUAAAGCUGUCAA	chr5:137895620-137895872(-)$1	252	118	145	22.1821
CUGACUGGGAGAAGACCAAGCCUGUCA	chr14:102463436-102463688(+)$1	252	146	173	23.2076
CCCAGCUGCCCCAUCUUCCCCAGCGCA	chrX:53559997-53560248(-)$1	251	108	135	23.5768
guuuuucaacuucaaauaaaugaaaua	chr14:21668446-21668715(-)$1	269	62	89	23.4159
caguucuucauucaacauuccaagaac	chr1:155629030-155629342(-)$1	312	125	152	23.9649
ACCUUAUCGGGGGCGAGAAUGGGGUAU	chr2:96949998-96950215(-)$1	217	97	124	22.9216
GGAGUGUGAGAAGGACAAGGCACCUCU	chr3:25706108-25706370(-)$1	262	157	184	25.7080
ACGGGGGACAGGGACCAGAACCCCCGA	chrX:153588257-153588469(-)$1	212	139	166	22.8569
ACACCAUCCUCAUCAAGUACGGUGGUG	chrX:153585738-153585984(-)$1	246	84	111	24.0349
CAUUGUAUCAUUUGGACACUUUGGAGU	chr9:114689983-114690240(+)$1	257	72	99	22.9608
gauaggugugacacagacaaaguaccc	chr1:28564511-28564815(+)$1	304	242	269	22.7966
CUGUAGCCAAAGUCUGCCCCUGGCUGC	chr1:19494435-19494691(-)$1	256	90	117	22.9334
AGCGGCUCUUUCCGCUAUCUGCCGCUU	chr2:216973976-216974244(+)$1	268	81	108	23.5000
CAAAGUGGAUAUUAAUGCCCCAGAUGU	chr11:62289983-62290236(-)$1	253	83	110	22.7869
ACCAGACUAAAACAUUGGCAGAGUCUG	chr9:35706170-35706437(-)$1	267	171	198	23.9343
CAGACAGGUGAAGGAGAUGAACCCUGC	chr5:10263262-10263500(+)$1	238	102	129	22.3279
GGCCCCGCAGCGCUCCCUUUCAGUGGG	chrX:153595013-153595237(-)$1	224	162	189	23.9893
AGUACAUGUUAUUCUUCAUUUAUGGUC	chr6:119510776-119511083(-)$1	307	258	285	23.1695
AAGAGCUUCCCUGCCUCCUUUGCUGUG	chr6:167364249-167364528(-)$1	279	218	245	18.9375
ACACAGUGAACAAGACCCCCCACACUG	chr7:30671820-30672070(+)$1	250	162	189	22.3181
GAGCACACGUGAUCCUUUGGUGGUUCU	chr2:96944327-96944548(-)$1	221	16	43	23.8977
UGCGGGGCACUAUGGACCCAGCCCUGC	chr11:9406239-9406495(+)$1	256	99	126	22.2678
GAGCGAGGCGCUCAAAGUCAGCCUCGC	chr21:16436963-16437408(-)$1	445	60	87	23.3911

#DB
(((..(((..............)))))	chr2:96950904-96951146(-)$1	1	12	39	24.0202
(.((((.((...........)).))))	chr5:140998385-140998634(-)$1	1	28	55	21.6694
((((((((............))).)))	chr1:113632822-113633036(+)$1	1	136	163	24.7060
(((((((.............)))))))	chr10:75842157-75842403(+)$1	1	161	188	24.5781
((((.((.............)).))))	chr3:47866447-47866720(+)$1	1	16	43	24.0944
.((.(((((...........))))).)	chr10:75832412-75832650(+)$1	1	133	160	21.9795
..((((((............))))))(	chr4:83345625-83345893(-)$1	1	37	64	22.0719
(..((((((...........)))))))	chrX:47072328-47072590(+)$1	1	93	120	22.1916
((((.(((..............))).)	chr17:78341694-78341971(+)$1	1	177	204	23.3885
(((..((..............))..))	chr20:48706424-48706783(-)$1	1	94	121	22.3756
((((((((............))).)))	chr19:49994998-49995225(+)$1	1	126	153	25.3666
.((((.((............)))))))	chr17:57758956-57759209(+)$1	1	121	148	23.3876
((.(((((.............))))).	chrX:53245173-53245407(-)$1	1	180	207	23.9353
((..((((............))))..)	chr19:10260118-10260378(-)$1	1	219	246	23.1695
((((.(((............)))))))	chrX:117629773-117630046(+)$1	1	90	117	24.7694
(((..(((.............)))...	chr16:29808174-29808456(+)$1	1	75	102	24.8675
(((..(((............)))))))	chr9:35710748-35710983(-)$1	1	171	198	24.6889
(((((.((............))...))	chr16:70582181-70582438(+)$1	1	63	90	23.6581
.(((((((............)))))).	chrX:153592631-153592840(-)$1	1	94	121	24.0345
..((..(((...........)))..))	chr9:35060764-35061021(-)$1	1	115	142	22.6255
((((.(((................)))	chr17:1562614-1562864(-)$1	1	129	156	20.7945
((((((((............)))))))	chr3:184045273-184045527(+)$1	1	184	211	22.2678
(((.((((............)))).))	chr14:104152454-104152716(+)$1	1	26	53	22.2655
.(((((................)))))	chr1:156235806-156236078(-)$1	1	187	214	20.9311
((((((((.............)))...	chr3:33840062-33840330(+)$1	1	170	197	24.3391
(((((((((...........)))))))	chr15:91489758-91490078(+)$1	1	16	43	21.4083
((((..(.............)..))))	chr6:31600541-31600765(+)$1	1	181	208	24.2642
).((((((............)))))))	chr1:19420425-19420649(-)$1	1	186	213	21.7895
(((((((.............)))))))	chr3:184025633-184025884(+)$1	1	209	236	24.5781
(..(((((..............)))))	chr3:58139084-58139360(+)$1	1	182	209	23.0791
((((..(((...........))).)))	chrX:153581629-153581850(-)$1	1	24	51	23.3938
((((((((..............)))).	chr4:1729799-1730114(+)$1	1	185	212	22.3921
((((((..............)))))))	chr5:137895620-137895872(-)$1	1	118	145	22.1821
)((((.((............)).))))	chr14:102463436-102463688(+)$1	1	146	173	23.2076
....((((............)))))))	chrX:53559997-53560248(-)$1	1	108	135	23.5768
((((((((............))))).)	chr14:21668446-21668715(-)$1	1	62	89	23.4159
((((((((.............))))).	chr1:155629030-155629342(-)$1	1	125	152	23.9649
.((.((((..............)))).	chr2:96949998-96950215(-)$1	1	97	124	22.9216
((((.(((............)))))))	chr3:25706108-25706370(-)$1	1	157	184	25.7080
.((((((.............)))))).	chrX:153588257-153588469(-)$1	1	139	166	22.8569
.(((((((............)))))))	chrX:153585738-153585984(-)$1	1	84	111	24.0349
.(((.((..............)).)))	chr9:114689983-114690240(+)$1	1	72	99	22.9608
((..((((..............)))).	chr1:28564511-28564815(+)$1	1	242	269	22.7966
))(((((((...........)))))))	chr1:19494435-19494691(-)$1	1	90	117	22.9334
((((((..............)))))))	chr2:216973976-216974244(+)$1	1	81	108	23.5000
((...(((...........)))....)	chr11:62289983-62290236(-)$1	1	83	110	22.7869
..((((((.............))))))	chr9:35706170-35706437(-)$1	1	171	198	23.9343
((((((((..............)))).	chr5:10263262-10263500(+)$1	1	102	129	22.3279
.(((((((..............)))))	chrX:153595013-153595237(-)$1	1	162	189	23.9893
((..((((............))))..)	chr6:119510776-119511083(-)$1	1	258	285	23.1695
((((((...............)))...	chr6:167364249-167364528(-)$1	1	218	245	18.9375
)))).(((............))).(((	chr7:30671820-30672070(+)$1	1	162	189	22.3181
((((.(((...........))))))))	chr2:96944327-96944548(-)$1	1	16	43	23.8977
((((((((............)))))))	chr11:9406239-9406495(+)$1	1	99	126	22.2678
..(((((((...........)))))))	chr21:16436963-16437408(-)$1	1	60	87	23.3911

#PSSM
g : 0.12	d : 0.12	e : 0.10	c : 0.09	h : 0.09	! : 0.07	f : 0.07	[ : 0.07	: : 0.03	b : 0.03	B : 0.03	# : 0.03	i : 0.01	a : 0.01	= : 0.01	% : 0.01	" : 0.01	
g : 0.16	e : 0.12	d : 0.12	b : 0.09	! : 0.09	f : 0.09	h : 0.09	c : 0.07	: : 0.03	[ : 0.01	i : 0.01	a : 0.01	B : 0.01	# : 0.01	= : 0.01	
g : 0.21	f : 0.16	d : 0.12	b : 0.10	e : 0.09	! : 0.09	h : 0.07	c : 0.03	i : 0.01	[ : 0.01	# : 0.01	= : 0.01	" : 0.01	
g : 0.21	f : 0.16	e : 0.14	! : 0.12	d : 0.09	[ : 0.05	b : 0.05	h : 0.05	c : 0.03	i : 0.01	# : 0.01	" : 0.01	
d : 0.20	e : 0.14	g : 0.14	! : 0.12	[ : 0.12	f : 0.12	h : 0.05	i : 0.01	" : 0.01	c : 0.01	: : 0.01	
c : 0.25	d : 0.16	g : 0.14	f : 0.12	e : 0.10	b : 0.05	[ : 0.05	! : 0.05	h : 0.03	
c : 0.27	d : 0.14	g : 0.12	b : 0.10	f : 0.10	e : 0.09	h : 0.03	w : 0.03	[ : 0.01	y : 0.01	a : 0.01	x : 0.01	
c : 0.27	d : 0.14	v : 0.09	e : 0.09	f : 0.09	g : 0.09	b : 0.07	w : 0.07	h : 0.03	y : 0.01	x : 0.01	
u : 0.36	w : 0.21	v : 0.18	g : 0.05	c : 0.03	y : 0.03	t : 0.03	b : 0.01	e : 0.01	f : 0.01	x : 0.01	
u : 0.36	w : 0.21	t : 0.18	v : 0.18	y : 0.03	x : 0.01	
u : 0.36	w : 0.21	t : 0.18	v : 0.18	y : 0.03	x : 0.01	
u : 0.36	w : 0.21	t : 0.18	v : 0.18	y : 0.03	x : 0.01	
u : 0.36	w : 0.21	t : 0.18	v : 0.18	y : 0.03	x : 0.01	
u : 0.36	w : 0.21	t : 0.18	v : 0.18	y : 0.03	x : 0.01	
u : 0.36	w : 0.21	t : 0.18	v : 0.18	y : 0.03	x : 0.01	
u : 0.36	w : 0.21	t : 0.18	v : 0.18	y : 0.03	x : 0.01	
u : 0.36	w : 0.21	t : 0.18	v : 0.18	y : 0.03	x : 0.01	
u : 0.36	w : 0.21	t : 0.18	v : 0.18	y : 0.03	x : 0.01	
u : 0.36	w : 0.21	t : 0.18	v : 0.18	y : 0.03	x : 0.01	
u : 0.36	w : 0.21	v : 0.18	t : 0.14	y : 0.03	c : 0.03	x : 0.01	
w : 0.18	c : 0.18	g : 0.12	f : 0.10	b : 0.09	v : 0.09	d : 0.07	e : 0.03	y : 0.03	h : 0.03	a : 0.01	x : 0.01	
c : 0.23	w : 0.14	b : 0.12	g : 0.12	f : 0.12	e : 0.07	d : 0.07	y : 0.03	h : 0.03	2 : 0.01	
c : 0.23	g : 0.16	d : 0.16	f : 0.12	e : 0.10	] : 0.05	b : 0.03	h : 0.03	3 : 0.01	y : 0.01	2 : 0.01	4 : 0.01	
d : 0.21	g : 0.21	f : 0.14	e : 0.10	c : 0.09	] : 0.07	2 : 0.03	h : 0.03	3 : 0.01	y : 0.01	4 : 0.01	: : 0.01	
g : 0.21	d : 0.16	f : 0.16	e : 0.14	c : 0.07	2 : 0.07	3 : 0.07	h : 0.03	i : 0.01	] : 0.01	4 : 0.01	
g : 0.21	f : 0.18	d : 0.16	e : 0.12	c : 0.05	] : 0.05	3 : 0.05	2 : 0.03	b : 0.03	h : 0.03	i : 0.01	4 : 0.01	
g : 0.23	d : 0.12	] : 0.12	f : 0.10	e : 0.09	b : 0.09	c : 0.07	3 : 0.05	h : 0.03	i : 0.01	E : 0.01	2 : 0.01	

#score	1274.163462671255
#seq	55
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_transcript_m2_run2.txt

#BEAR
::ccc[cccooooooccc]ccc:	chr13:113764795-113765095(+)$1	300	48	71	11.4501
""gggggggooooooggggggg5	chr7:47407157-47407431(-)$1	274	113	136	12.7157
fff!!ddddooooooddddffff	chr2:220099171-220099434(+)$1	263	88	111	11.7195
f"""eeeeeooooooeeeee]ff	chr2:130919541-130919795(-)$1	254	110	133	12.2600
eeeee[a[aooooooa]a]eeee	chr19:49607596-49607864(+)$1	268	182	205	12.4797
ffff!!cccooooooccc]ffff	chr8:142422835-142423115(+)$1	280	92	115	13.5645
ffff[cccaooooooa]ccc22f	chr22:50183457-50183776(-)$1	319	19	42	12.3770
ccc[eeeeeooooooeeeeeccc	chr10:81471607-81471880(-)$1	273	127	150	12.4285
gggggggbboooooobb]ggggg	chr13:113380063-113380314(+)$1	251	155	178	12.5250
eeee[ddddoooooodddd]eee	chr3:32901329-32901564(+)$1	235	105	128	11.1469
%%gggggggooooooggggggga	chr8:97506759-97507067(+)$1	308	32	55	12.1728
ddd[bba[aooooooa]a]bb]d	chr1:21983264-21983508(-)$1	244	31	54	11.5916
bb[ccc[bboooooobb]ccc]b	chr20:44981803-44982063(-)$1	260	80	103	11.9060
ff[ffffffooooooffffff]f	chr9:38620169-38620510(-)$1	341	104	127	12.4027
ddcccddddoooooodddd]ccc	chr6:31745877-31746135(-)$1	258	216	239	11.6647
[eeeeecccooooooccc]eeee	chr2:11675085-11675366(+)$1	281	53	76	12.9585
ccc"""cccooooooccc]ccc2	chr16:11885402-11885664(-)$1	262	45	68	13.7594
""ccc[cccooooooccc]ccc3	chr12:120567341-120567606(-)$1	265	39	62	14.3473
f[bb[ddddoooooodddd]bb]	chr7:1055992-1056279(-)$1	287	132	155	10.9989
ggggg[cccooooooccc22ggg	chr2:240944411-240944718(-)$1	307	273	296	13.6689
$$$ffffffooooooffffff66	chr5:881773-882056(-)$1	283	147	170	11.5302
a[gggggggooooooggggggg]	chr7:73875360-73875669(+)$1	309	240	263	13.2691
ggggggg[aooooooa]gggggg	chr10:134421969-134422279(+)$1	310	186	209	13.2041
ccc[eeeeeooooooeeeeeccc	chr16:30679172-30679456(+)$1	284	111	134	12.4285
[a[bb[cccooooooccc]bb]a	chr20:35154425-35154788(+)$1	363	202	225	13.2593
[ffffff[aooooooa]ffffff	chr14:103987666-103987979(-)$1	313	115	138	12.5378
####eeeeeooooooeeeeeccc	chr20:60622643-60622892(-)$1	249	217	240	12.5527
!!ccc!!bboooooobb22ccc]	chr20:31606848-31607113(+)$1	265	154	177	12.7551
dd[ffffffooooooffffffdd	chr19:54057318-54057577(+)$1	259	213	236	11.9988
[bb[a!!bboooooobb22a]bb	chr8:145723599-145723883(+)$1	284	186	209	11.5689
gggggg[bboooooobb]ggggg	chr6:114661985-114662258(-)$1	273	188	211	12.5280
[bb[ccc[aooooooa]ccc]bb	chr1:3387174-3387417(+)$1	243	40	63	12.2995
a[eeeee[aooooooaeeeee]a	chr10:128612890-128613212(+)$1	322	222	245	12.5748
ee[ffffffooooooffffffee	chr19:17513679-17513931(-)$1	252	126	149	12.1077
$$$ccc[bboooooobb]ccc]d	chr16:2217839-2218139(+)$1	300	94	117	11.8754
cc"""ddddoooooodddd]ccc	chr12:7036953-7037303(+)$1	350	76	99	12.0889
eeeee[cccooooooccc]eeee	chr20:25433751-25434037(-)$1	286	213	236	13.0357
fffff[cccooooooccc22fff	chr3:48689702-48689974(-)$1	272	199	222	13.1454
!!gggggggooooooggggggg3	chr19:18548045-18548307(-)$1	262	220	243	13.5334
b!!a!!cccooooooccc22a22	chr19:10920759-10921036(+)$1	277	133	156	13.3840
hhh[ddddaooooooa]dddd33	chr20:60891476-60891732(-)$1	256	149	172	11.7046
ggggggg[aooooooaggggggg	chr16:68380569-68380829(+)$1	260	230	253	13.2535
bb[bb[cccooooooccc]bbbb	chr19:54024504-54024760(+)$1	256	98	121	12.1607
bba[eeeeeooooooeeeee22a	chr3:24535986-24536274(-)$1	288	90	113	11.6402
$$gggggggooooooggggggg5	chr22:42294752-42295021(+)$1	269	76	99	12.3721
ddccc[cccooooooccc]ccc3	chrX:118561064-118561342(+)$1	278	75	98	13.8723
ddd[eeeeeooooooeeeee]dd	chr8:145650864-145651120(-)$1	256	90	113	11.6225
d[ddddcccooooooccc]dddd	chr2:101711064-101711363(-)$1	299	40	63	12.3218
:dddd[cccooooooccc]dddd	chr20:61917311-61917556(+)$1	245	57	80	11.7483
)))ffffffooooooffffffcc	chr2:240287367-240287628(-)$1	261	87	110	11.2659
ggg[a!!bboooooobb22aggg	chr19:2112844-2113152(-)$1	308	75	98	12.4845
fffff[cccooooooccc]ffff	chr2:159532928-159533203(+)$1	275	65	88	13.4936
bb[a!!cccooooooccc22a]b	chrX:149107568-149107943(+)$1	375	166	189	13.2077
:ccc!!cccooooooccc22ccc	chr9:127261548-127261828(-)$1	280	250	273	12.7978
d"""eeeeeooooooeeeee777	chr3:50255782-50256025(+)$1	243	152	175	10.9044
ee[ffffffooooooffffff44	chr3:48664372-48664599(-)$1	227	64	87	12.5426
[a[ccc[bboooooobb]ccc]a	chr6:31864979-31865273(-)$1	294	36	59	12.6353
ccc"""cccooooooccc22ccc	chr19:17355006-17355302(-)$1	296	229	252	13.5149
b[ccc[cccooooooccc]ccc]	chr22:51149421-51149667(+)$1	246	206	229	13.9876
eee[eeeeeooooooeeeee444	chr2:85572453-85572765(-)$1	312	218	241	12.1747
gggffffffooooooffffff00	chr19:16762343-16762604(-)$1	261	15	38	11.8643
dd####cccoooooocccdddd]	chr11:2158870-2159126(-)$1	256	145	168	12.6764

#otherMatches

#Seq PSSM
ACGGCAGGGAGGACACCCAGCCA	chr13:113764795-113765095(+)$1	300	48	71	11.4501
AGGGGCUUGGGGGAACAGGCCCA	chr7:47407157-47407431(-)$1	274	113	136	12.7157
AGUUUAUCUUUGAUUGGAUGCUG	chr2:220099171-220099434(+)$1	263	88	111	11.7195
GUGCGGUAGGAGAGGCUGCCUCC	chr2:130919541-130919795(-)$1	254	110	133	12.2600
CGUGUGCGUGAUGAUGGGGACAC	chr19:49607596-49607864(+)$1	268	182	205	12.4797
UGGGAGCUCAGGAGAGGGGCCCA	chr8:142422835-142423115(+)$1	280	92	115	13.5645
ACCACGGCCUCCUUUGUGCCUCU	chr22:50183457-50183776(-)$1	319	19	42	12.3770
GAGAGGUUGGCCAGGCAGCCCUC	chr10:81471607-81471880(-)$1	273	127	150	12.4285
GAGGGUGCCCCUGAAGGACGCCC	chr13:113380063-113380314(+)$1	251	155	178	12.5250
UCCUCAGGUCAUACCACCUAAGG	chr3:32901329-32901564(+)$1	235	105	128	11.1469
AUUGCGGUUUGGUCUAGCCGCAG	chr8:97506759-97507067(+)$1	308	32	55	12.1728
ugggugcucaauacagugucagc	chr1:21983264-21983508(-)$1	244	31	54	11.5916
CCGAAAGUCUAAGCUGAAUUUGG	chr20:44981803-44982063(-)$1	260	80	103	11.9060
GGGUUGCGGGGGGGAUCGCGGGU	chr9:38620169-38620510(-)$1	341	104	127	12.4027
GCCUCCUGGGUUCCGCCAGAGAG	chr6:31745877-31746135(-)$1	258	216	239	11.6647
guugguugauucaauuuguauca	chr2:11675085-11675366(+)$1	281	53	76	12.9585
CCCACCUUGUUUCCCCAAAGGGU	chr16:11885402-11885664(-)$1	262	45	68	13.7594
aagcugugggaccagccagggca	chr12:120567341-120567606(-)$1	265	39	62	14.3473
cugcugugcugcugugcgcugcu	chr7:1055992-1056279(-)$1	287	132	155	10.9989
GUGCCAuuauuaauuuaacaggc	chr2:240944411-240944718(-)$1	307	273	296	13.6689
GCGGUGGGGAGCUGCCCCCACAC	chr5:881773-882056(-)$1	283	147	170	11.5302
GCAGGGGGCAGCUUAGCCCUUUC	chr7:73875360-73875669(+)$1	309	240	263	13.2691
UGGCCAUGGGCAUGACGGUGGCC	chr10:134421969-134422279(+)$1	310	186	209	13.2041
GUUUCACCUGGGUUUGGGUGGAC	chr16:30679172-30679456(+)$1	284	111	134	12.4285
UGCAUGUCCAGAAAAGGGGAUCC	chr20:35154425-35154788(+)$1	363	202	225	13.2593
UCCCCCGAGGUGGGGCACGGGGG	chr14:103987666-103987979(-)$1	313	115	138	12.5378
UCUAGCGCUGUCCUGAGUGUGGC	chr20:60622643-60622892(-)$1	249	217	240	12.5527
CUCUUAUCUGUCCCAAGUGAAGU	chr20:31606848-31607113(+)$1	265	154	177	12.7551
UGUGCACGCGCACAUGUGUGUCG	chr19:54057318-54057577(+)$1	259	213	236	11.9988
GUUGUCAGGGAAGAGCCGAAGGA	chr8:145723599-145723883(+)$1	284	186	209	11.5689
GAAGUAAUAAACAGCUGGUGCUU	chr6:114661985-114662258(-)$1	273	188	211	12.5280
guggucagggauguaugugagua	chr1:3387174-3387417(+)$1	243	40	63	12.2995
CGGCCCUUGAAACGGCAGGGUGG	chr10:128612890-128613212(+)$1	322	222	245	12.5748
UUCUGGGGUCUUUGAGCUCCAAA	chr19:17513679-17513931(-)$1	252	126	149	12.1077
CCUGCAUGCUUUCCUGCCUGCCU	chr16:2217839-2218139(+)$1	300	94	117	11.8754
UCGGGCCGGGCCAUUUCGGAGGG	chr12:7036953-7037303(+)$1	350	76	99	12.0889
CUCUCUGGAGCCAGAUCCUGGGA	chr20:25433751-25434037(-)$1	286	213	236	13.0357
GGUUGGUGCGAGGGGGUGAAUGA	chr3:48689702-48689974(-)$1	272	199	222	13.1454
GGAGGUCUCAGGGGAGGGGCCUG	chr19:18548045-18548307(-)$1	262	220	243	13.5334
CCUGCCUGUCACUGUGCACCCUA	chr19:10920759-10921036(+)$1	277	133	156	13.3840
CCCAGCUGCUUGUGUGUCAGCCC	chr20:60891476-60891732(-)$1	256	149	172	11.7046
CUGUCUGUGCUCUAACCAGACAG	chr16:68380569-68380829(+)$1	260	230	253	13.2535
ugugugugugugugAAUAAGCCA	chr19:54024504-54024760(+)$1	256	98	121	12.1607
GGCACUGGUAAUUUGGCUAGAGG	chr3:24535986-24536274(-)$1	288	90	113	11.6402
AAUCUUGUUUGAGUUAGCAGGAG	chr22:42294752-42295021(+)$1	269	76	99	12.3721
CAGCUCUGCUCACUUGCAUGGCA	chrX:118561064-118561342(+)$1	278	75	98	13.8723
CUGGGGGGCUUGGGUGCUCCAUA	chr8:145650864-145651120(-)$1	256	90	113	11.6225
auagucugagaaaaaucauggcu	chr2:101711064-101711363(-)$1	299	40	63	12.3218
CUGCGGGCCAUUUGGGGCGUGCA	chr20:61917311-61917556(+)$1	245	57	80	11.7483
UGUGCAUGCGUGUCUGCGUGUGU	chr2:240287367-240287628(-)$1	261	87	110	11.2659
CAGGCAGGCGUGAGGGCAAGCUG	chr19:2112844-2113152(-)$1	308	75	98	12.4845
CUUGCCCUCCAGCUUGAGAGUGA	chr2:159532928-159533203(+)$1	275	65	88	13.4936
uggggagaggcggggcucggcgc	chrX:149107568-149107943(+)$1	375	166	189	13.2077
AAGcagcaggagaaacugaggcu	chr9:127261548-127261828(-)$1	280	250	273	12.7978
CAAUCCCCACAGUGUUGGGGUCC	chr3:50255782-50256025(+)$1	243	152	175	10.9044
CCUUCACUCUCUCAUGGGUGGCC	chr3:48664372-48664599(-)$1	227	64	87	12.5426
GGAGUGGGCACGGAGGCGCGCGU	chr6:31864979-31865273(-)$1	294	36	59	12.6353
GGAAUUGACUGAAACGUCCCUCU	chr19:17355006-17355302(-)$1	296	229	252	13.5149
ucugugcgugggugagcggauau	chr22:51149421-51149667(+)$1	246	206	229	13.9876
UUGACUGGUGCAGGAGCUAGAGA	chr2:85572453-85572765(-)$1	312	218	241	12.1747
GGAAGAAGUCAGCAUGCUUCUCU	chr19:16762343-16762604(-)$1	261	15	38	11.8643
GCAGGAGUCAUGGCAGACGCCAC	chr11:2158870-2159126(-)$1	256	145	168	12.6764

#DB
..(((.(((......))).))).	chr13:113764795-113765095(+)$1	1	48	71	11.4501
..(((((((......))))))).	chr7:47407157-47407431(-)$1	1	113	136	12.7157
(((..((((......))))))))	chr2:220099171-220099434(+)$1	1	88	111	11.7195
(...(((((......))))).))	chr2:130919541-130919795(-)$1	1	110	133	12.2600
(((((.(.(......).).))))	chr19:49607596-49607864(+)$1	1	182	205	12.4797
((((..(((......))).))))	chr8:142422835-142423115(+)$1	1	92	115	13.5645
((((.((((......).)))..)	chr22:50183457-50183776(-)$1	1	19	42	12.3770
(((.(((((......))))))))	chr10:81471607-81471880(-)$1	1	127	150	12.4285
(((((((((......)).)))))	chr13:113380063-113380314(+)$1	1	155	178	12.5250
((((.((((......)))).)))	chr3:32901329-32901564(+)$1	1	105	128	11.1469
..(((((((......))))))))	chr8:97506759-97507067(+)$1	1	32	55	12.1728
(((.(((.(......).).)).)	chr1:21983264-21983508(-)$1	1	31	54	11.5916
((.(((.((......)).))).)	chr20:44981803-44982063(-)$1	1	80	103	11.9060
((.((((((......)))))).)	chr9:38620169-38620510(-)$1	1	104	127	12.4027
(((((((((......)))).)))	chr6:31745877-31746135(-)$1	1	216	239	11.6647
.((((((((......))).))))	chr2:11675085-11675366(+)$1	1	53	76	12.9585
(((...(((......))).))).	chr16:11885402-11885664(-)$1	1	45	68	13.7594
..(((.(((......))).))).	chr12:120567341-120567606(-)$1	1	39	62	14.3473
(.((.((((......)))).)).	chr7:1055992-1056279(-)$1	1	132	155	10.9989
(((((.(((......)))..)))	chr2:240944411-240944718(-)$1	1	273	296	13.6689
...((((((......))))))..	chr5:881773-882056(-)$1	1	147	170	11.5302
(.(((((((......))))))).	chr7:73875360-73875669(+)$1	1	240	263	13.2691
(((((((.(......).))))))	chr10:134421969-134422279(+)$1	1	186	209	13.2041
(((.(((((......))))))))	chr16:30679172-30679456(+)$1	1	111	134	12.4285
.(.((.(((......))).)).)	chr20:35154425-35154788(+)$1	1	202	225	13.2593
.((((((.(......).))))))	chr14:103987666-103987979(-)$1	1	115	138	12.5378
....(((((......))))))))	chr20:60622643-60622892(-)$1	1	217	240	12.5527
..(((..((......))..))).	chr20:31606848-31607113(+)$1	1	154	177	12.7551
((.((((((......))))))))	chr19:54057318-54057577(+)$1	1	213	236	11.9988
.((.(..((......))..).))	chr8:145723599-145723883(+)$1	1	186	209	11.5689
((((((.((......)).)))))	chr6:114661985-114662258(-)$1	1	188	211	12.5280
.((.(((.(......).))).))	chr1:3387174-3387417(+)$1	1	40	63	12.2995
(.(((((.(......)))))).)	chr10:128612890-128613212(+)$1	1	222	245	12.5748
((.((((((......))))))))	chr19:17513679-17513931(-)$1	1	126	149	12.1077
...(((.((......)).))).)	chr16:2217839-2218139(+)$1	1	94	117	11.8754
((...((((......)))).)))	chr12:7036953-7037303(+)$1	1	76	99	12.0889
(((((.(((......))).))))	chr20:25433751-25434037(-)$1	1	213	236	13.0357
(((((.(((......)))..)))	chr3:48689702-48689974(-)$1	1	199	222	13.1454
..(((((((......))))))).	chr19:18548045-18548307(-)$1	1	220	243	13.5334
(..(..(((......)))..)..	chr19:10920759-10921036(+)$1	1	133	156	13.3840
(((.(((((......).))))..	chr20:60891476-60891732(-)$1	1	149	172	11.7046
(((((((.(......))))))))	chr16:68380569-68380829(+)$1	1	230	253	13.2535
((.((.(((......))).))))	chr19:54024504-54024760(+)$1	1	98	121	12.1607
(((.(((((......)))))..)	chr3:24535986-24536274(-)$1	1	90	113	11.6402
..(((((((......))))))).	chr22:42294752-42295021(+)$1	1	76	99	12.3721
(((((.(((......))).))).	chrX:118561064-118561342(+)$1	1	75	98	13.8723
(((.(((((......))))).))	chr8:145650864-145651120(-)$1	1	90	113	11.6225
(.(((((((......))).))))	chr2:101711064-101711363(-)$1	1	40	63	12.3218
.((((.(((......))).))))	chr20:61917311-61917556(+)$1	1	57	80	11.7483
...((((((......))))))))	chr2:240287367-240287628(-)$1	1	87	110	11.2659
(((.(..((......))..))))	chr19:2112844-2113152(-)$1	1	75	98	12.4845
(((((.(((......))).))))	chr2:159532928-159533203(+)$1	1	65	88	13.4936
((.(..(((......)))..).)	chrX:149107568-149107943(+)$1	1	166	189	13.2077
.(((..(((......)))..)))	chr9:127261548-127261828(-)$1	1	250	273	12.7978
(...(((((......)))))...	chr3:50255782-50256025(+)$1	1	152	175	10.9044
((.((((((......))))))..	chr3:48664372-48664599(-)$1	1	64	87	12.5426
.(.(((.((......)).))).)	chr6:31864979-31865273(-)$1	1	36	59	12.6353
(((...(((......)))..)))	chr19:17355006-17355302(-)$1	1	229	252	13.5149
(.(((.(((......))).))).	chr22:51149421-51149667(+)$1	1	206	229	13.9876
(((.(((((......)))))...	chr2:85572453-85572765(-)$1	1	218	241	12.1747
(((((((((......))))))..	chr19:16762343-16762604(-)$1	1	15	38	11.8643
((....(((......))))))).	chr11:2158870-2159126(-)$1	1	145	168	12.6764

#PSSM
f : 0.12	d : 0.12	g : 0.11	e : 0.09	b : 0.09	[ : 0.09	c : 0.08	: : 0.04	$ : 0.04	" : 0.03	a : 0.03	! : 0.03	% : 0.01	# : 0.01	h : 0.01	) : 0.01	
f : 0.11	e : 0.11	g : 0.11	d : 0.11	c : 0.09	b : 0.09	[ : 0.08	" : 0.06	$ : 0.04	! : 0.04	a : 0.03	: : 0.01	% : 0.01	# : 0.01	h : 0.01	) : 0.01	
g : 0.19	c : 0.17	[ : 0.14	f : 0.09	e : 0.09	d : 0.06	" : 0.04	b : 0.04	$ : 0.03	# : 0.03	! : 0.01	h : 0.01	a : 0.01	) : 0.01	
f : 0.19	c : 0.16	g : 0.16	[ : 0.16	" : 0.08	e : 0.08	b : 0.04	# : 0.03	a : 0.03	d : 0.03	! : 0.01	
e : 0.19	c : 0.16	g : 0.16	f : 0.16	! : 0.08	[ : 0.04	b : 0.04	" : 0.04	d : 0.04	a : 0.03	# : 0.01	
[ : 0.19	e : 0.16	g : 0.14	f : 0.12	d : 0.11	! : 0.11	c : 0.08	" : 0.03	b : 0.01	# : 0.01	
c : 0.35	e : 0.14	g : 0.12	f : 0.12	d : 0.09	[ : 0.06	! : 0.04	a : 0.03	
c : 0.33	e : 0.12	b : 0.12	[ : 0.11	f : 0.11	d : 0.09	g : 0.08	
c : 0.32	a : 0.14	e : 0.12	b : 0.12	f : 0.11	g : 0.08	d : 0.08	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.32	a : 0.14	e : 0.12	b : 0.12	f : 0.11	g : 0.08	d : 0.08	
c : 0.32	e : 0.14	b : 0.12	] : 0.11	f : 0.11	g : 0.09	d : 0.08	
c : 0.35	e : 0.14	f : 0.12	g : 0.11	d : 0.09	] : 0.08	2 : 0.04	a : 0.03	
] : 0.24	g : 0.14	e : 0.14	2 : 0.14	f : 0.12	d : 0.11	c : 0.08	
e : 0.19	c : 0.17	f : 0.17	g : 0.14	2 : 0.09	] : 0.06	d : 0.06	b : 0.04	a : 0.03	
c : 0.25	f : 0.19	g : 0.17	e : 0.08	] : 0.06	b : 0.06	d : 0.06	2 : 0.03	a : 0.03	7 : 0.01	4 : 0.01	
c : 0.22	g : 0.17	] : 0.12	f : 0.09	e : 0.08	d : 0.08	b : 0.06	2 : 0.04	4 : 0.03	6 : 0.01	3 : 0.01	7 : 0.01	0 : 0.01	
f : 0.12	c : 0.12	g : 0.09	d : 0.09	e : 0.08	a : 0.08	b : 0.08	] : 0.08	3 : 0.06	5 : 0.03	2 : 0.03	4 : 0.03	: : 0.01	6 : 0.01	7 : 0.01	0 : 0.01	

#score	774.0635966800318
#seq	62
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF074EQM_DDX59_CDS_m3_run2.txt

#BEAR
gggggqqqqqqqqgggg	chr1:33235869-33236118(+)$1	249	201	218	13.5765
c[cccqqqqqqqqccc3	chr19:48197406-48197692(+)$1	286	233	250	14.3812
ddcccqqqqqqqqccce	chr1:33236505-33236844(+)$1	339	48	65	14.0059
b[cccqqqqqqqqccc]	chr6:138752287-138752576(-)$1	289	170	187	14.1444
fffffqqqqqqqqffff	chr11:10828728-10828969(-)$1	241	153	170	12.8416
fffffqqqqqqqqffff	chr14:99976949-99977208(+)$1	259	216	233	12.8416
!!cccqqqqqqqqccc4	chr7:143079893-143080201(+)$1	308	201	218	14.6087
f:cccqqqqqqqqccc:	chr4:2831209-2831480(+)$1	271	115	132	12.0778
eeeeeqqqqqqqqeeee	chr17:79686872-79687136(+)$1	264	117	134	13.4963
=====qqqqqqqq====	chr19:2248065-2248325(+)$1	260	151	168	13.6943
dddddqqqqqqqqdddd	chr19:36278938-36279209(+)$1	271	6	23	13.8555
b[cccqqqqqqqqccc]	chr2:242694628-242694976(+)$1	348	229	246	14.1444
:ddddqqqqqqqqdddd	chr17:40947117-40947362(+)$1	245	190	207	13.2512
fffffqqqqqqqqffff	chr2:172016835-172017095(-)$1	260	75	92	12.8416
fffffqqqqqqqqffff	chr15:56535213-56535505(-)$1	292	114	131	12.8416
gggggqqqqqqqqgggg	chr8:145065574-145065800(+)$1	226	2	19	13.5765
gggggqqqqqqqqgggg	chr7:72412565-72412826(+)$1	261	67	84	13.5765
gggggqqqqqqqqgggg	chr17:47375767-47376103(-)$1	336	283	300	13.5765
eeeeeqqqqqqqqeeee	chr19:58213835-58214108(+)$1	273	137	154	13.4963
[a[bbqqqqqqqqbb]a	chr17:79826464-79826769(-)$1	305	71	88	12.6105
gggggqqqqqqqqgggg	chr20:2816670-2816938(-)$1	268	52	69	13.5765
[ddddqqqqqqqqdddd	chr16:2577649-2577889(+)$1	240	38	55	14.2350
%ddddqqqqqqqqdddd	chr12:57920511-57920740(+)$1	229	77	94	13.7079
[ddddqqqqqqqqdddd	chr3:47452322-47452628(+)$1	306	229	246	14.2350
$ddddqqqqqqqqdddd	chr12:57919725-57919953(+)$1	228	124	141	14.0760
"""bbqqqqqqqqbb33	chr19:7935461-7935730(-)$1	269	57	74	12.8150
eeeeeqqqqqqqqeeee	chr12:49444417-49444671(-)$1	254	38	55	13.4963
:ddddqqqqqqqqdddd	chr12:57110348-57110598(-)$1	250	35	52	13.2512
eeeeeqqqqqqqqeeee	chr2:74274132-74274394(+)$1	262	192	209	13.4963
eeeeeqqqqqqqqeeee	chr19:36258531-36258816(+)$1	285	94	111	13.4963
""cccqqqqqqqqccc4	chr12:49433723-49433981(-)$1	258	179	196	14.5119
&ddddqqqqqqqqdddd	chr3:47452084-47452380(+)$1	296	263	280	13.6901
d[cccqqqqqqqqcccd	chr19:50435830-50436117(+)$1	287	153	170	14.1524
:ddddqqqqqqqqdddd	chr19:3056242-3056500(-)$1	258	23	40	13.2512
""cccqqqqqqqqccc3	chr3:47451502-47451803(+)$1	301	46	63	14.5499
eeeeeqqqqqqqqeeee	chr12:57919176-57919439(+)$1	263	23	40	13.4963
###bbqqqqqqqqbb44	chr17:76113624-76113879(-)$1	255	195	212	12.6983
!ddddqqqqqqqqdddd	chr3:184097895-184098252(+)$1	357	89	106	14.2578
%ddddqqqqqqqqdddd	chr12:57920441-57920670(+)$1	229	147	164	13.7079
eeeeeqqqqqqqqeeee	chr12:7024846-7025097(+)$1	251	175	192	13.4963
#ddddqqqqqqqqdddd	chr22:51019866-51020170(-)$1	304	59	76	14.2341
##cccqqqqqqqqccc4	chr11:118770564-118770845(-)$1	281	199	216	14.4742
fffffqqqqqqqqffff	chr12:57919951-57920247(+)$1	296	253	270	12.8416
eeeeeqqqqqqqqeeee	chr19:15353620-15353872(-)$1	252	212	229	13.4963
eeeeeqqqqqqqqeeee	chr7:73011594-73011839(-)$1	245	68	85	13.4963
:ddddqqqqqqqqdddd	chr2:204305549-204305783(-)$1	234	215	232	13.2512
cccccqqqqqqqqccc]	chr22:18301422-18301750(-)$1	328	53	70	14.1393
eeeeeqqqqqqqqeeee	chr12:7046044-7046366(+)$1	322	275	292	13.4963
##cccqqqqqqqqccc6	chr12:57919424-57919676(+)$1	252	92	109	14.0083
fffffqqqqqqqqffff	chr1:1361441-1361693(+)$1	252	112	129	12.8416
:ddddqqqqqqqqdddd	chr1:8420937-8421326(-)$1	389	5	22	13.2512
[ddddqqqqqqqqdddd	chr12:7045390-7045649(+)$1	259	31	48	14.2350
gggggqqqqqqqqgggg	chr8:145065600-145065824(+)$1	224	21	38	13.5765
[ddddqqqqqqqqdddd	chr12:49445281-49445629(-)$1	348	1	18	14.2350
d[cccqqqqqqqqccc2	chr12:58005535-58005830(+)$1	295	16	33	14.0297
[ddddqqqqqqqqdddd	chr12:49445487-49445757(-)$1	270	183	200	14.2350
[ddddqqqqqqqqdddd	chr12:57919582-57919870(+)$1	288	129	146	14.2350
!!cccqqqqqqqqccc2	chr19:15353696-15354008(-)$1	312	99	116	14.4375
:ddddqqqqqqqqdddd	chr7:100075517-100075784(-)$1	267	136	153	13.2512
##cccqqqqqqqqccc2	chr9:116930968-116931255(+)$1	287	45	62	14.3030
!!cccqqqqqqqqccc2	chr19:15353851-15354090(-)$1	239	181	198	14.4375
gggggqqqqqqqqgggg	chr14:93118195-93118539(+)$1	344	21	38	13.5765
b[cccqqqqqqqqccc]	chr6:138752376-138752624(-)$1	248	218	235	14.1444
%%cccqqqqqqqqccc6	chr19:2248441-2248694(+)$1	253	189	206	12.8557
c[cccqqqqqqqqccc3	chr6:33166829-33167119(-)$1	290	218	235	14.3812
[ddddqqqqqqqqdddd	chr12:57919670-57919892(+)$1	222	41	58	14.2350
=====qqqqqqqq====	chr19:2247967-2248265(+)$1	298	249	266	13.6943
ccc[aqqqqqqqqa]cc	chr20:42176536-42176859(+)$1	323	203	220	13.2963
fffffqqqqqqqqffff	chr19:16940357-16940707(+)$1	350	5	22	12.8416
eeeeeqqqqqqqqeeee	chr5:175957875-175958120(-)$1	245	127	144	13.4963
cc[bbqqqqqqqqbb]c	chr8:22432328-22432621(+)$1	293	83	100	12.4004
c[cccqqqqqqqqcccc	chr9:96021510-96021777(+)$1	267	25	42	14.2243

#otherMatches

#Seq PSSM
ACCCUCUCCUCUAAGGG	chr1:33235869-33236118(+)$1	249	201	218	13.5765
CCCCUACUGCCCCAGGC	chr19:48197406-48197692(+)$1	286	233	250	14.3812
ACCCUCCCUCCCAAGGG	chr1:33236505-33236844(+)$1	339	48	65	14.0059
CUUGACCCCAAAUUCAU	chr6:138752287-138752576(-)$1	289	170	187	14.1444
UGCUUCUCGUUUCAGGU	chr11:10828728-10828969(-)$1	241	153	170	12.8416
CGACUUGCAGAGUAGUU	chr14:99976949-99977208(+)$1	259	216	233	12.8416
caacuccauguccaguc	chr7:143079893-143080201(+)$1	308	201	218	14.6087
CCGGUCCCCUACUGCCA	chr4:2831209-2831480(+)$1	271	115	132	12.0778
CCCUGUCUCCCUCCAGG	chr17:79686872-79687136(+)$1	264	117	134	13.4963
GGGUUCACCCACCAGCC	chr19:2248065-2248325(+)$1	260	151	168	13.6943
CGGCGCCCUACACCGCC	chr19:36278938-36279209(+)$1	271	6	23	13.8555
GCCACUCUGUGCCGUGU	chr2:242694628-242694976(+)$1	348	229	246	14.1444
CCUAGUCCCCUCCCUAG	chr17:40947117-40947362(+)$1	245	190	207	13.2512
CCGCCAUGACGGAGGCG	chr2:172016835-172017095(-)$1	260	75	92	12.8416
AGCCCUUGUGCCCGGGC	chr15:56535213-56535505(-)$1	292	114	131	12.8416
CCCCUACCCCCAAGGGG	chr8:145065574-145065800(+)$1	226	2	19	13.5765
AAGCAAAGCUUCCUGUU	chr7:72412565-72412826(+)$1	261	67	84	13.5765
UCUGCGGCACCUGGCAG	chr17:47375767-47376103(-)$1	336	283	300	13.5765
UGCUCCCCAGUGUGAGC	chr19:58213835-58214108(+)$1	273	137	154	13.4963
UGUGUCCCCCCCAGCCC	chr17:79826464-79826769(-)$1	305	71	88	12.6105
GAGCACCUGGccuugcu	chr20:2816670-2816938(-)$1	268	52	69	13.5765
UCCAGAUGCCCAGCUGG	chr16:2577649-2577889(+)$1	240	38	55	14.2350
CAUUGCUCAACCACAGU	chr12:57920511-57920740(+)$1	229	77	94	13.7079
UGCCCCAUCUCCAGGGC	chr3:47452322-47452628(+)$1	306	229	246	14.2350
CGCAGACCCCCUACUGU	chr12:57919725-57919953(+)$1	228	124	141	14.0760
UCUGGCCUCACCCCCUU	chr19:7935461-7935730(-)$1	269	57	74	12.8150
GCUGUAACUCUUCAUGG	chr12:49444417-49444671(-)$1	254	38	55	13.4963
CAGUGACUCCUUCCACU	chr12:57110348-57110598(-)$1	250	35	52	13.2512
AACUCCUAGAACUGAGU	chr2:74274132-74274394(+)$1	262	192	209	13.4963
UGGAUCUCCGAAAGUCC	chr19:36258531-36258816(+)$1	285	94	111	13.4963
CAGGGAACUUCCACCCA	chr12:49433723-49433981(-)$1	258	179	196	14.5119
AGGUCCCGCUCAAGACC	chr3:47452084-47452380(+)$1	296	263	280	13.6901
CUGGCCAUCUACUGCCG	chr19:50435830-50436117(+)$1	287	153	170	14.1524
ucagcugucucuugcug	chr19:3056242-3056500(-)$1	258	23	40	13.2512
CUGGCCCACGACUGCCU	chr3:47451502-47451803(+)$1	301	46	63	14.5499
GAGUUCCUCCUACAACU	chr12:57919176-57919439(+)$1	263	23	40	13.4963
ACACCAUGUACGAGGCC	chr17:76113624-76113879(-)$1	255	195	212	12.6983
ccggcccccucccgccg	chr3:184097895-184098252(+)$1	357	89	106	14.2578
CAUUGCUCAACCACAGU	chr12:57920441-57920670(+)$1	229	147	164	13.7079
GGGAGAUCCUGGACUCC	chr12:7024846-7025097(+)$1	251	175	192	13.4963
AAUGUCUGCCUCCACAU	chr22:51019866-51020170(-)$1	304	59	76	14.2341
CACCGCAGGGCUCCGGG	chr11:118770564-118770845(-)$1	281	199	216	14.4742
GGCUGGAAAGAGGCAGC	chr12:57919951-57920247(+)$1	296	253	270	12.8416
GUUUUGUCCUCAGGAAG	chr19:15353620-15353872(-)$1	252	212	229	13.4963
GCUGCCUGCUCCUGCAG	chr7:73011594-73011839(-)$1	245	68	85	13.4963
UUGUGACCAUCCCCGCA	chr2:204305549-204305783(-)$1	234	215	232	13.2512
CCCCAGCCACCCGUGGC	chr22:18301422-18301750(-)$1	328	53	70	14.1393
GGCCUCCCCACCUGGGC	chr12:7046044-7046366(+)$1	322	275	292	13.4963
UCAGACCCUCCUCUCUU	chr12:57919424-57919676(+)$1	252	92	109	14.0083
GUGCUUCCGACACAGCG	chr1:1361441-1361693(+)$1	252	112	129	12.8416
CAGCUCCCUCCUCAGCU	chr1:8420937-8421326(-)$1	389	5	22	13.2512
CUCCCCACGCCAUGGGA	chr12:7045390-7045649(+)$1	259	31	48	14.2350
GGGCUACCCACAGGGCC	chr8:145065600-145065824(+)$1	224	21	38	13.5765
AGGAGUCUCCCCUUUCC	chr12:49445281-49445629(-)$1	348	1	18	14.2350
CCUCCCACAGCCUGGAC	chr12:58005535-58005830(+)$1	295	16	33	14.0297
AGGACUCGCCUAUGUCC	chr12:49445487-49445757(-)$1	270	183	200	14.2350
AGCAGCCUACUCUCUGC	chr12:57919582-57919870(+)$1	288	129	146	14.2350
cagcccccuccacggcc	chr19:15353696-15354008(-)$1	312	99	116	14.4375
AGAAGAAGAGUAGUUUC	chr7:100075517-100075784(-)$1	267	136	153	13.2512
AUCUUCAUUUACAAAGU	chr9:116930968-116931255(+)$1	287	45	62	14.3030
cagcccccuccacggcc	chr19:15353851-15354090(-)$1	239	181	198	14.4375
UGGGCCCCACGccgccc	chr14:93118195-93118539(+)$1	344	21	38	13.5765
CUUGACCCCAAAUUCAU	chr6:138752376-138752624(-)$1	248	218	235	14.1444
CCGCUCAUUAAACAGCC	chr19:2248441-2248694(+)$1	253	189	206	12.8557
UUGUUUUCCUUGUAACC	chr6:33166829-33167119(-)$1	290	218	235	14.3812
AGCAGCCUACUCUCUGC	chr12:57919670-57919892(+)$1	222	41	58	14.2350
GGGUUCACCCACCAGCC	chr19:2247967-2248265(+)$1	298	249	266	13.6943
caaccccucAGAUGAUU	chr20:42176536-42176859(+)$1	323	203	220	13.2963
CCCCGCCCUCCCUCGGG	chr19:16940357-16940707(+)$1	350	5	22	12.8416
GCCUGUGCCCUAUCAGG	chr5:175957875-175958120(-)$1	245	127	144	13.4963
GAUUCCCACCCACGACU	chr8:22432328-22432621(+)$1	293	83	100	12.4004
CGUGGCCCAGCUCCCAG	chr9:96021510-96021777(+)$1	267	25	42	14.2243

#DB
(((((........))))	chr1:33235869-33236118(+)$1	1	201	218	13.5765
(.(((........))).	chr19:48197406-48197692(+)$1	1	233	250	14.3812
))(((........)))(	chr1:33236505-33236844(+)$1	1	48	65	14.0059
(.(((........))).	chr6:138752287-138752576(-)$1	1	170	187	14.1444
(((((........))))	chr11:10828728-10828969(-)$1	1	153	170	12.8416
(((((........))))	chr14:99976949-99977208(+)$1	1	216	233	12.8416
..(((........))).	chr7:143079893-143080201(+)$1	1	201	218	14.6087
).(((........))).	chr4:2831209-2831480(+)$1	1	115	132	12.0778
(((((........))))	chr17:79686872-79687136(+)$1	1	117	134	13.4963
(((((........))))	chr19:2248065-2248325(+)$1	1	151	168	13.6943
(((((........))))	chr19:36278938-36279209(+)$1	1	6	23	13.8555
(.(((........))).	chr2:242694628-242694976(+)$1	1	229	246	14.1444
.((((........))))	chr17:40947117-40947362(+)$1	1	190	207	13.2512
(((((........))))	chr2:172016835-172017095(-)$1	1	75	92	12.8416
(((((........))))	chr15:56535213-56535505(-)$1	1	114	131	12.8416
(((((........))))	chr8:145065574-145065800(+)$1	1	2	19	13.5765
(((((........))))	chr7:72412565-72412826(+)$1	1	67	84	13.5765
(((((........))))	chr17:47375767-47376103(-)$1	1	283	300	13.5765
(((((........))))	chr19:58213835-58214108(+)$1	1	137	154	13.4963
.(.((........)).)	chr17:79826464-79826769(-)$1	1	71	88	12.6105
(((((........))))	chr20:2816670-2816938(-)$1	1	52	69	13.5765
.((((........))))	chr16:2577649-2577889(+)$1	1	38	55	14.2350
.((((........))))	chr12:57920511-57920740(+)$1	1	77	94	13.7079
.((((........))))	chr3:47452322-47452628(+)$1	1	229	246	14.2350
.((((........))))	chr12:57919725-57919953(+)$1	1	124	141	14.0760
...((........))..	chr19:7935461-7935730(-)$1	1	57	74	12.8150
(((((........))))	chr12:49444417-49444671(-)$1	1	38	55	13.4963
.((((........))))	chr12:57110348-57110598(-)$1	1	35	52	13.2512
(((((........))))	chr2:74274132-74274394(+)$1	1	192	209	13.4963
(((((........))))	chr19:36258531-36258816(+)$1	1	94	111	13.4963
..(((........))).	chr12:49433723-49433981(-)$1	1	179	196	14.5119
.((((........))))	chr3:47452084-47452380(+)$1	1	263	280	13.6901
(.(((........))))	chr19:50435830-50436117(+)$1	1	153	170	14.1524
.((((........))))	chr19:3056242-3056500(-)$1	1	23	40	13.2512
..(((........))).	chr3:47451502-47451803(+)$1	1	46	63	14.5499
(((((........))))	chr12:57919176-57919439(+)$1	1	23	40	13.4963
...((........))..	chr17:76113624-76113879(-)$1	1	195	212	12.6983
.((((........))))	chr3:184097895-184098252(+)$1	1	89	106	14.2578
.((((........))))	chr12:57920441-57920670(+)$1	1	147	164	13.7079
(((((........))))	chr12:7024846-7025097(+)$1	1	175	192	13.4963
.((((........))))	chr22:51019866-51020170(-)$1	1	59	76	14.2341
..(((........))).	chr11:118770564-118770845(-)$1	1	199	216	14.4742
(((((........))))	chr12:57919951-57920247(+)$1	1	253	270	12.8416
(((((........))))	chr19:15353620-15353872(-)$1	1	212	229	13.4963
(((((........))))	chr7:73011594-73011839(-)$1	1	68	85	13.4963
.((((........))))	chr2:204305549-204305783(-)$1	1	215	232	13.2512
(((((........))).	chr22:18301422-18301750(-)$1	1	53	70	14.1393
(((((........))))	chr12:7046044-7046366(+)$1	1	275	292	13.4963
..(((........))).	chr12:57919424-57919676(+)$1	1	92	109	14.0083
(((((........))))	chr1:1361441-1361693(+)$1	1	112	129	12.8416
.((((........))))	chr1:8420937-8421326(-)$1	1	5	22	13.2512
.((((........))))	chr12:7045390-7045649(+)$1	1	31	48	14.2350
(((((........))))	chr8:145065600-145065824(+)$1	1	21	38	13.5765
.((((........))))	chr12:49445281-49445629(-)$1	1	1	18	14.2350
(.(((........))).	chr12:58005535-58005830(+)$1	1	16	33	14.0297
.((((........))))	chr12:49445487-49445757(-)$1	1	183	200	14.2350
.((((........))))	chr12:57919582-57919870(+)$1	1	129	146	14.2350
..(((........))).	chr19:15353696-15354008(-)$1	1	99	116	14.4375
.((((........))))	chr7:100075517-100075784(-)$1	1	136	153	13.2512
..(((........))).	chr9:116930968-116931255(+)$1	1	45	62	14.3030
..(((........))).	chr19:15353851-15354090(-)$1	1	181	198	14.4375
(((((........))))	chr14:93118195-93118539(+)$1	1	21	38	13.5765
(.(((........))).	chr6:138752376-138752624(-)$1	1	218	235	14.1444
..(((........))).	chr19:2248441-2248694(+)$1	1	189	206	12.8557
(.(((........))).	chr6:33166829-33167119(-)$1	1	218	235	14.3812
.((((........))))	chr12:57919670-57919892(+)$1	1	41	58	14.2350
(((((........))))	chr19:2247967-2248265(+)$1	1	249	266	13.6943
(((.(........).))	chr20:42176536-42176859(+)$1	1	203	220	13.2963
(((((........))))	chr19:16940357-16940707(+)$1	1	5	22	12.8416
(((((........))))	chr5:175957875-175958120(-)$1	1	127	144	13.4963
((.((........)).)	chr8:22432328-22432621(+)$1	1	83	100	12.4004
(.(((........))))	chr9:96021510-96021777(+)$1	1	25	42	14.2243

#PSSM
e : 0.15	f : 0.11	[ : 0.11	g : 0.09	c : 0.08	: : 0.08	# : 0.06	d : 0.05	! : 0.05	b : 0.04	% : 0.04	" : 0.04	= : 0.02	$ : 0.01	& : 0.01	
d : 0.29	e : 0.15	[ : 0.11	g : 0.09	f : 0.09	# : 0.05	! : 0.04	" : 0.04	c : 0.04	= : 0.02	: : 0.01	a : 0.01	% : 0.01	
c : 0.29	d : 0.27	e : 0.15	g : 0.09	f : 0.09	= : 0.02	[ : 0.02	" : 0.01	# : 0.01	
c : 0.27	d : 0.27	e : 0.15	g : 0.09	f : 0.09	b : 0.05	= : 0.02	[ : 0.01	
c : 0.27	d : 0.27	e : 0.15	g : 0.09	f : 0.09	b : 0.05	= : 0.02	a : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.27	d : 0.27	e : 0.15	g : 0.09	f : 0.09	b : 0.05	= : 0.02	a : 0.01	
c : 0.27	d : 0.27	e : 0.15	g : 0.09	f : 0.09	b : 0.05	= : 0.02	] : 0.01	
c : 0.29	d : 0.27	e : 0.15	g : 0.09	f : 0.09	= : 0.02	] : 0.02	3 : 0.01	4 : 0.01	
d : 0.29	e : 0.16	g : 0.09	f : 0.09	3 : 0.05	] : 0.05	4 : 0.05	2 : 0.05	c : 0.04	= : 0.02	6 : 0.02	: : 0.01	a : 0.01	

#score	983.2929065388155
#seq	72
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565BTR_METAP2_CDS_m2_run2.txt

#BEAR
[eeeeexxxxxxxxxxxxxxxeeee	chr11:14515090-14515339(-)$1	249	102	127	19.8331
eeeeddddtttttttttttdddd]e	chr17:39925266-39925531(-)$1	265	50	75	20.9809
bbeeeeevvvvvvvvvvvvveeeee	chr16:88873707-88873962(+)$1	255	203	228	22.3886
ggggyyyyyyyyyyyyyyyyggggg	chr19:14561625-14561912(+)$1	287	151	176	22.3263
ggggggguuuuuuuuuuuugggggg	chr1:19446697-19446941(-)$1	244	47	72	23.2999
ddeeeeeuuuuuuuuuuuueeeee4	chr19:17973626-17973857(+)$1	231	58	83	23.6132
ffffffxxxxxxxxxxxxxxxffff	chr1:201972442-201972685(+)$1	243	143	168	18.8029
!ffffffuuuuuuuuuuuuffffff	chr22:38271800-38272077(+)$1	277	9	34	23.2003
[ffffffvvvvvvvvvvvvvfffff	chr3:53263001-53263254(-)$1	253	60	85	22.2384
gggggggtttttttttttggggggg	chr19:3977830-3978040(-)$1	210	1	26	20.9737
b!!ddddtttttttttttddddbb]	chr16:88873435-88873709(+)$1	274	28	53	19.8615
&ffffffuuuuuuuuuuuuffffff	chr22:35806640-35806887(+)$1	247	164	189	22.5014
!!ddddyyyyyyyyyyyyyyyyddd	chr12:6692418-6692641(-)$1	223	120	145	21.4937
gggggggtttttttttttggggggg	chr17:79478113-79478324(-)$1	211	36	61	20.9737
[ddddwwwwwwwwwwwwwwdddd]c	chr16:2012638-2012866(-)$1	228	187	212	21.7591
"eeeeewwwwwwwwwwwwwweeeee	chr7:102114706-102114955(-)$1	249	27	52	23.2420
=======wwwwwwwwwwwwww====	chr4:1978225-1978505(+)$1	280	136	161	22.1226
##eeeeettttttttttteeeee44	chr7:127569173-127569427(+)$1	254	17	42	21.6785
eeeeexxxxxxxxxxxxxxxeeeee	chr11:65822537-65822794(+)$1	257	20	45	19.5569
ggggggguuuuuuuuuuuugggggg	chr16:204215-204465(+)$1	250	145	170	23.2999
ggggggguuuuuuuuuuuugggggg	chr3:13393345-13393574(-)$1	229	3	28	23.2999
!cccxxxxxxxxxxxxxxxccc]cc	chr17:79478124-79478364(-)$1	240	168	193	18.7827
b:bb[ccctttttttttttccc]bb	chr19:39214715-39214963(+)$1	248	181	206	19.2659
a[eeeeeuuuuuuuuuuuueeeeea	chr1:46105793-46106139(-)$1	346	238	263	23.8849
ffffyyyyyyyyyyyyyyyyfffff	chr1:43162753-43162961(+)$1	208	42	67	22.0233
!bb[ddddtttttttttttddddbb	chr11:67168060-67168431(-)$1	371	229	254	20.0058
[ffffffwwwwwwwwwwwwwwffff	chr8:124194928-124195224(+)$1	296	90	115	22.0720
[eeeeeauuuuuuuuuuuua]eeee	chr7:1526607-1526835(-)$1	228	120	145	24.4174
b[eeeeeuuuuuuuuuuuueeeee]	chr2:176044722-176044979(-)$1	257	42	67	23.7867
"fffffftttttttttttffffff3	chr4:109543160-109543385(+)$1	225	154	179	20.9554
ggggggguuuuuuuuuuuugggggg	chr5:176941652-176941938(-)$1	286	153	178	23.2999
ff:eeeeettttttttttteeeeeE	chr15:58254175-58254457(-)$1	282	198	223	19.7237
:dddd[bbtttttttttttbbdddd	chr16:30080040-30080273(+)$1	233	40	65	19.2529
::eeeeeuuuuuuuuuuuueeeee:	chr19:1432505-1432770(+)$1	265	134	159	21.0498
Eddddwwwwwwwwwwwwwwddddbb	chr1:19453016-19453251(-)$1	235	13	38	20.0194
##eeeeevvvvvvvvvvvvveeeee	chr16:21976641-21976917(+)$1	276	213	238	22.9043
ffffcccwwwwwwwwwwwwwwccc2	chr11:73686490-73686808(-)$1	318	89	114	21.6488
""eeeeeuuuuuuuuuuuueeeee3	chr16:30079866-30080072(+)$1	206	75	100	24.0676
iiiiiiiitttttttttttiiiiii	chr10:81928890-81929171(-)$1	281	15	40	20.7145
ffffyyyyyyyyyyyyyyyyfffff	chr1:43162750-43162952(+)$1	202	45	70	22.0233
ff[a[bbtttttttttttbb]a]ff	chr2:242195554-242195847(-)$1	293	49	74	20.3530
[cccxxxxxxxxxxxxxxxcccddd	chr16:29818518-29818744(+)$1	226	172	197	18.6108
dd"""ccctttttttttttcccddd	chr17:75484727-75485050(+)$1	323	56	81	20.6830
eeeeeyyyyyyyyyyyyyyyyeeee	chr16:29818081-29818314(+)$1	233	13	38	22.6134
iii[bbvvvvvvvvvvvvvbbiiii	chr8:146017299-146017522(-)$1	223	162	187	21.2437
ffff[bbvvvvvvvvvvvvvbb22f	chr8:144940424-144940718(-)$1	294	115	140	20.6862
ggddddvvvvvvvvvvvvvdddd]g	chr17:78350581-78350846(+)$1	265	98	123	21.7427
[ddddwwwwwwwwwwwwwwdddd]c	chr16:2012517-2012758(-)$1	241	79	104	21.7591
eeeeexxxxxxxxxxxxxxxeeeee	chr1:44455987-44456235(+)$1	248	70	95	19.5569
gggggggtttttttttttggggggg	chr19:3977840-3978066(-)$1	226	27	52	20.9737
ee[dddduuuuuuuuuuuudddd]e	chr19:3977203-3977407(-)$1	204	35	60	22.7845
!eeeeewwwwwwwwwwwwwweeeee	chr3:10347141-10347370(-)$1	229	39	64	23.2982
eee[cccuuuuuuuuuuuuccc]ee	chr11:9225264-9225562(-)$1	298	200	225	23.4966
[ffffffxxxxxxxxxxxxxxxfff	chr16:2158821-2159076(-)$1	255	108	133	18.5375
========ttttttttttt======	chr16:29818701-29818975(+)$1	274	72	97	21.2864
[cccxxxxxxxxxxxxxxxccc]a]	chr16:88793378-88793625(-)$1	247	156	181	18.8116
dddd[bbuuuuuuuuuuuubb]ddd	chr19:1619725-1619951(-)$1	226	79	104	21.8141
[eeeeewwwwwwwwwwwwwweeeee	chr12:57006705-57006988(-)$1	283	116	141	23.3283
dd[ccc[attttttttttta]ccc2	chr19:12962697-12962948(+)$1	251	99	124	21.3394
bbeeeeeuuuuuuuuuuuueeeee]	chr17:26900826-26901051(-)$1	225	134	159	23.5041
eeeeeccctttttttttttccc444	chr8:145623186-145623441(-)$1	255	72	97	21.6054
[eeeeewwwwwwwwwwwwwweeeee	chr22:38627144-38627420(-)$1	276	80	105	23.3283
C::dddduuuuuuuuuuuuddddcc	chr1:21940390-21940675(-)$1	285	96	121	19.5272
ffffffwwwwwwwwwwwwwwfffff	chr19:2271292-2271568(+)$1	276	2	27	22.1940
#ffffffwwwwwwwwwwwwwwffff	chr10:71124472-71124687(+)$1	215	60	85	21.9616
!!fffffftttttttttttffffff	chr19:1434767-1435025(+)$1	258	189	214	21.1697
dd[cccwwwwwwwwwwwwwwcccdd	chr19:18418079-18418378(-)$1	299	101	126	21.8529
[cccyyyyyyyyyyyyyyyyccccc	chr16:29817952-29818199(+)$1	247	151	176	22.2104

#otherMatches

#Seq PSSM
CACAGCUAUGUUAGAAGAAAUGCUG	chr11:14515090-14515339(-)$1	249	102	127	19.8331
CGCCCCUGCCUUUGCCCUCCAGGUG	chr17:39925266-39925531(-)$1	265	50	75	20.9809
AGGGGCGUGCAGGGUGGAAUUGCCU	chr16:88873707-88873962(+)$1	255	203	228	22.3886
GGGGAGCUGCCCGCCGACCACCCCA	chr19:14561625-14561912(+)$1	287	151	176	22.3263
CUGGAGGACUUCUUCCUACUCUUCA	chr1:19446697-19446941(-)$1	244	47	72	23.2999
GCCCAGGCAACACCGUCACCCUGGC	chr19:17973626-17973857(+)$1	231	58	83	23.6132
CCUGGUAAGAAAAAAUGGUGAACCA	chr1:201972442-201972685(+)$1	243	143	168	18.8029
UUGGGACUCAUGAAUGUUUGUUCUA	chr22:38271800-38272077(+)$1	277	9	34	23.2003
UAGGGGUCUUAUUUCUGCAUAUCCU	chr3:53263001-53263254(-)$1	253	60	85	22.2384
GGACAUCGAUAAAGGCGAGGUGUCC	chr19:3977830-3978040(-)$1	210	1	26	20.9737
GAAGGCCUUGAGUCAAUUGGCCCUG	chr16:88873435-88873709(+)$1	274	28	53	19.8615
UUGGCCUGACUACCAGCAGGGGCCG	chr22:35806640-35806887(+)$1	247	164	189	22.5014
AAUCAUUAAACAGGAAGAAAGUGUG	chr12:6692418-6692641(-)$1	223	120	145	21.4937
CCGAUGGCCAGGUCAUCACCAUUGG	chr17:79478113-79478324(-)$1	211	36	61	20.9737
UCCUGACUCCUUCCCUCACCAGGUG	chr16:2012638-2012866(-)$1	228	187	212	21.7591
CUUGGAGCACAAGAUCAUCAUCCGA	chr7:102114706-102114955(-)$1	249	27	52	23.2420
AGGCCUACCACCUGUCCUGCCUGGG	chr4:1978225-1978505(+)$1	280	136	161	22.1226
CGUUGGGUUUUAUUACUUUCCAGUU	chr7:127569173-127569427(+)$1	254	17	42	21.6785
UCCCAUGCCACCACCACCUUUGGGA	chr11:65822537-65822794(+)$1	257	20	45	19.5569
UCGGUCGUAUCCUCUGUCCUGACCG	chr16:204215-204465(+)$1	250	145	170	23.2999
CUUGCCCUGCCACCUUCCUGGGCAA	chr3:13393345-13393574(-)$1	229	3	28	23.2999
AAGGUUUCUACUCUUACAUCCUCGG	chr17:79478124-79478364(-)$1	240	168	193	18.7827
CUGAGAGCAACCACAUCAAGCUGUC	chr19:39214715-39214963(+)$1	248	181	206	19.2659
CUGUACCACCUCCUUCCAAGGUAUG	chr1:46105793-46106139(-)$1	346	238	263	23.8849
GGUUUUUUUAUUAUAUUACUGACCC	chr1:43162753-43162961(+)$1	208	42	67	22.0233
GAGUGUGCCAGCAUCAACCGCAUCU	chr11:67168060-67168431(-)$1	371	229	254	20.0058
UGGUGUGUUCCAUUUGCUUCCCACA	chr8:124194928-124195224(+)$1	296	90	115	22.0720
GGCUGGCGGACCUGGUACAGUCCAG	chr7:1526607-1526835(-)$1	228	120	145	24.4174
AUUGAAAUCUUUAUUUUUUUUUCAU	chr2:176044722-176044979(-)$1	257	42	67	23.7867
AGCACCAAAAUCUGCAUGUGGUGUG	chr4:109543160-109543385(+)$1	225	154	179	20.9554
GCAGGAGGACAGCUCACCACUCCUG	chr5:176941652-176941938(-)$1	286	153	178	23.2999
CCACAGUGUUUUCCAACGUCACUGA	chr15:58254175-58254457(-)$1	282	198	223	19.7237
AGGAGUGGAAACCACAUGCCCCUCC	chr16:30080040-30080273(+)$1	233	40	65	19.2529
CAUGAGCAAGCCCCCGACAGCUCAG	chr19:1432505-1432770(+)$1	265	134	159	21.0498
AGUGUGUUUCCCAUCCCCAACACCC	chr1:19453016-19453251(-)$1	235	13	38	20.0194
CUUGUUUUUCACAUUAAAUUGAACA	chr16:21976641-21976917(+)$1	276	213	238	22.9043
CAGAUGACCUCCCUUGCCACUUCAC	chr11:73686490-73686808(-)$1	318	89	114	21.6488
AAUGUUGUUACCCUGACCCCAACAG	chr16:30079866-30080072(+)$1	206	75	100	24.0676
GCAGGGCCCAUUGGCCUCAGGCUCU	chr10:81928890-81929171(-)$1	281	15	40	20.7145
GGUUUUUUUAUUAUAUUACUGACCC	chr1:43162750-43162952(+)$1	202	45	70	22.0233
AGAGGCUAGAAGUAGAAAAGGCAUU	chr2:242195554-242195847(-)$1	293	49	74	20.3530
CGCCAAGGAGUUCAAGAACGGCUAC	chr16:29818518-29818744(+)$1	226	172	197	18.6108
UGACUCGUCCCCAUCCCCCACGCAG	chr17:75484727-75485050(+)$1	323	56	81	20.6830
GGCGGCCUCAUGAACUCCUUCCCGC	chr16:29818081-29818314(+)$1	233	13	38	22.6134
GGGGCGGGAGGGGAAGGGACGCCCG	chr8:146017299-146017522(-)$1	223	162	187	21.2437
CGACCCCGUGCGCAACCUGAGGCUG	chr8:144940424-144940718(-)$1	294	115	140	20.6862
AGCAUGCUUUUCUUCCAACCAUGCC	chr17:78350581-78350846(+)$1	265	98	123	21.7427
UCCUGACUCCUUCCCUCACCAGGUG	chr16:2012517-2012758(-)$1	241	79	104	21.7591
CCACUCUUCACCAAUAUCACAGUGG	chr1:44455987-44456235(+)$1	248	70	95	19.5569
GGACAUCGAUAAAGGCGAGGUGUCC	chr19:3977840-3978066(-)$1	226	27	52	20.9737
UGACAGGUUUUCUUUCCCUUCUGGC	chr19:3977203-3977407(-)$1	204	35	60	22.7845
AGCCUCAUAGACCACCCAUCGGGGC	chr3:10347141-10347370(-)$1	229	39	64	23.2982
UCUAUGGGCCAAUAAUCUGCCAGAG	chr11:9225264-9225562(-)$1	298	200	225	23.4966
AGAGCGGCCCCUGCUUCACCAACCG	chr16:2158821-2159076(-)$1	255	108	133	18.5375
GUGCUAUGAAGAUGCCGACCAUGGU	chr16:29818701-29818975(+)$1	274	72	97	21.2864
GUGCCCAACUUUAUCCACUGCAGGU	chr16:88793378-88793625(-)$1	247	156	181	18.8116
ACGUCCCCACUCCCUUCCAGGAACG	chr19:1619725-1619951(-)$1	226	79	104	21.8141
UGAUAGUCAAACAUCAACCUCUAUC	chr12:57006705-57006988(-)$1	283	116	141	23.3283
UGAAGAAGUUGCUUAUUAUCAUCUC	chr19:12962697-12962948(+)$1	251	99	124	21.3394
GAGGCAUCAUUCAACCUCAAUGCCA	chr17:26900826-26901051(-)$1	225	134	159	23.5041
GCUGACUGCCCCAUGCCUACAGUGA	chr8:145623186-145623441(-)$1	255	72	97	21.6054
CCUUGGUCAUCUAUAAUUUCCUGAG	chr22:38627144-38627420(-)$1	276	80	105	23.3283
CAUUUCAAUUACUACUCACUGGACG	chr1:21940390-21940675(-)$1	285	96	121	19.5272
GGGUGGGGAUGUGCUGAAGGCCGCC	chr19:2271292-2271568(+)$1	276	2	27	22.1940
CUUCAGCUUUUUGAUCAUGUUGCUG	chr10:71124472-71124687(+)$1	215	60	85	21.9616
ACUUGUGAACUCGUGACAAUCACAA	chr19:1434767-1435025(+)$1	258	189	214	21.1697
GUGAGCGCCCACCCAGACCGGCUGC	chr19:18418079-18418378(-)$1	299	101	126	21.8529
AUGAACUCCUUCCCGCCACCUCAGG	chr16:29817952-29818199(+)$1	247	151	176	22.2104

#DB
.(((((...............))))	chr11:14515090-14515339(-)$1	1	102	127	19.8331
((((((((...........)))).)	chr17:39925266-39925531(-)$1	1	50	75	20.9809
))(((((.............)))))	chr16:88873707-88873962(+)$1	1	203	228	22.3886
((((................)))))	chr19:14561625-14561912(+)$1	1	151	176	22.3263
(((((((............))))))	chr1:19446697-19446941(-)$1	1	47	72	23.2999
(((((((............))))).	chr19:17973626-17973857(+)$1	1	58	83	23.6132
((((((...............))))	chr1:201972442-201972685(+)$1	1	143	168	18.8029
.((((((............))))))	chr22:38271800-38272077(+)$1	1	9	34	23.2003
.((((((.............)))))	chr3:53263001-53263254(-)$1	1	60	85	22.2384
(((((((...........)))))))	chr19:3977830-3978040(-)$1	1	1	26	20.9737
(..((((...........)))))).	chr16:88873435-88873709(+)$1	1	28	53	19.8615
.((((((............))))))	chr22:35806640-35806887(+)$1	1	164	189	22.5014
..((((................)))	chr12:6692418-6692641(-)$1	1	120	145	21.4937
(((((((...........)))))))	chr17:79478113-79478324(-)$1	1	36	61	20.9737
.((((..............)))).)	chr16:2012638-2012866(-)$1	1	187	212	21.7591
.(((((..............)))))	chr7:102114706-102114955(-)$1	1	27	52	23.2420
(((((((..............))))	chr4:1978225-1978505(+)$1	1	136	161	22.1226
..(((((...........)))))..	chr7:127569173-127569427(+)$1	1	17	42	21.6785
(((((...............)))))	chr11:65822537-65822794(+)$1	1	20	45	19.5569
(((((((............))))))	chr16:204215-204465(+)$1	1	145	170	23.2999
(((((((............))))))	chr3:13393345-13393574(-)$1	1	3	28	23.2999
.(((...............))).))	chr17:79478124-79478364(-)$1	1	168	193	18.7827
).((.(((...........))).))	chr19:39214715-39214963(+)$1	1	181	206	19.2659
(.(((((............))))))	chr1:46105793-46106139(-)$1	1	238	263	23.8849
((((................)))))	chr1:43162753-43162961(+)$1	1	42	67	22.0233
.((.((((...........))))))	chr11:67168060-67168431(-)$1	1	229	254	20.0058
.((((((..............))))	chr8:124194928-124195224(+)$1	1	90	115	22.0720
.((((((............).))))	chr7:1526607-1526835(-)$1	1	120	145	24.4174
(.(((((............))))).	chr2:176044722-176044979(-)$1	1	42	67	23.7867
.((((((...........)))))).	chr4:109543160-109543385(+)$1	1	154	179	20.9554
(((((((............))))))	chr5:176941652-176941938(-)$1	1	153	178	23.2999
)).(((((...........))))))	chr15:58254175-58254457(-)$1	1	198	223	19.7237
.((((.((...........))))))	chr16:30080040-30080273(+)$1	1	40	65	19.2529
..(((((............))))).	chr19:1432505-1432770(+)$1	1	134	159	21.0498
(((((..............))))((	chr1:19453016-19453251(-)$1	1	13	38	20.0194
..(((((.............)))))	chr16:21976641-21976917(+)$1	1	213	238	22.9043
(((((((..............))).	chr11:73686490-73686808(-)$1	1	89	114	21.6488
..(((((............))))).	chr16:30079866-30080072(+)$1	1	75	100	24.0676
((((((((...........))))))	chr10:81928890-81929171(-)$1	1	15	40	20.7145
((((................)))))	chr1:43162750-43162952(+)$1	1	45	70	22.0233
((.(.((...........)).).))	chr2:242195554-242195847(-)$1	1	49	74	20.3530
.(((...............))))))	chr16:29818518-29818744(+)$1	1	172	197	18.6108
((...(((...........))))))	chr17:75484727-75485050(+)$1	1	56	81	20.6830
(((((................))))	chr16:29818081-29818314(+)$1	1	13	38	22.6134
(((.((.............))))))	chr8:146017299-146017522(-)$1	1	162	187	21.2437
((((.((.............))..)	chr8:144940424-144940718(-)$1	1	115	140	20.6862
((((((.............)))).)	chr17:78350581-78350846(+)$1	1	98	123	21.7427
.((((..............)))).)	chr16:2012517-2012758(-)$1	1	79	104	21.7591
(((((...............)))))	chr1:44455987-44456235(+)$1	1	70	95	19.5569
(((((((...........)))))))	chr19:3977840-3978066(-)$1	1	27	52	20.9737
((.((((............)))).)	chr19:3977203-3977407(-)$1	1	35	60	22.7845
.(((((..............)))))	chr3:10347141-10347370(-)$1	1	39	64	23.2982
(((.(((............))).))	chr11:9225264-9225562(-)$1	1	200	225	23.4966
.((((((...............)))	chr16:2158821-2159076(-)$1	1	108	133	18.5375
((((((((...........))))))	chr16:29818701-29818975(+)$1	1	72	97	21.2864
.(((...............))).).	chr16:88793378-88793625(-)$1	1	156	181	18.8116
((((.((............)).)))	chr19:1619725-1619951(-)$1	1	79	104	21.8141
.(((((..............)))))	chr12:57006705-57006988(-)$1	1	116	141	23.3283
((.(((.(...........).))).	chr19:12962697-12962948(+)$1	1	99	124	21.3394
(((((((............))))).	chr17:26900826-26901051(-)$1	1	134	159	23.5041
((((((((...........)))...	chr8:145623186-145623441(-)$1	1	72	97	21.6054
.(((((..............)))))	chr22:38627144-38627420(-)$1	1	80	105	23.3283
(..((((............))))((	chr1:21940390-21940675(-)$1	1	96	121	19.5272
((((((..............)))))	chr19:2271292-2271568(+)$1	1	2	27	22.1940
.((((((..............))))	chr10:71124472-71124687(+)$1	1	60	85	21.9616
..((((((...........))))))	chr19:1434767-1435025(+)$1	1	189	214	21.1697
((.(((..............)))))	chr19:18418079-18418378(-)$1	1	101	126	21.8529
.(((................)))))	chr16:29817952-29818199(+)$1	1	151	176	22.2104

#PSSM
[ : 0.17	g : 0.13	f : 0.11	e : 0.10	! : 0.08	b : 0.07	d : 0.07	" : 0.04	# : 0.04	= : 0.02	: : 0.02	i : 0.02	& : 0.01	a : 0.01	E : 0.01	C : 0.01	
f : 0.22	e : 0.19	g : 0.13	d : 0.13	c : 0.05	b : 0.04	! : 0.04	: : 0.04	= : 0.02	# : 0.02	[ : 0.02	i : 0.02	" : 0.01	
e : 0.30	f : 0.20	g : 0.11	d : 0.10	c : 0.05	[ : 0.05	= : 0.02	b : 0.02	: : 0.02	i : 0.02	! : 0.01	" : 0.01	
e : 0.30	f : 0.20	d : 0.14	g : 0.11	c : 0.08	[ : 0.04	= : 0.02	b : 0.01	i : 0.01	a : 0.01	" : 0.01	
e : 0.29	d : 0.16	f : 0.14	g : 0.10	y : 0.05	[ : 0.05	c : 0.05	x : 0.04	= : 0.02	i : 0.01	" : 0.01	b : 0.01	
e : 0.23	f : 0.14	d : 0.10	g : 0.10	c : 0.10	y : 0.07	x : 0.07	b : 0.05	w : 0.04	= : 0.02	[ : 0.01	i : 0.01	
e : 0.14	w : 0.13	f : 0.11	x : 0.10	g : 0.10	y : 0.08	d : 0.07	c : 0.07	b : 0.05	= : 0.02	v : 0.02	a : 0.01	i : 0.01	[ : 0.01	
u : 0.25	w : 0.19	x : 0.11	t : 0.10	v : 0.08	y : 0.08	c : 0.04	d : 0.02	e : 0.01	b : 0.01	i : 0.01	= : 0.01	a : 0.01	f : 0.01	
t : 0.26	u : 0.25	w : 0.19	x : 0.11	v : 0.08	y : 0.08	
t : 0.26	u : 0.25	w : 0.19	x : 0.11	v : 0.08	y : 0.08	
t : 0.26	u : 0.25	w : 0.19	x : 0.11	v : 0.08	y : 0.08	
t : 0.26	u : 0.25	w : 0.19	x : 0.11	v : 0.08	y : 0.08	
t : 0.26	u : 0.25	w : 0.19	x : 0.11	v : 0.08	y : 0.08	
t : 0.26	u : 0.25	w : 0.19	x : 0.11	v : 0.08	y : 0.08	
t : 0.26	u : 0.25	w : 0.19	x : 0.11	v : 0.08	y : 0.08	
t : 0.26	u : 0.25	w : 0.19	x : 0.11	v : 0.08	y : 0.08	
t : 0.26	u : 0.25	w : 0.19	x : 0.11	v : 0.08	y : 0.08	
t : 0.26	u : 0.25	w : 0.19	x : 0.11	v : 0.08	y : 0.08	
u : 0.25	w : 0.19	t : 0.16	x : 0.11	v : 0.08	y : 0.08	g : 0.04	d : 0.01	e : 0.01	f : 0.01	b : 0.01	
w : 0.14	d : 0.13	e : 0.11	g : 0.10	c : 0.10	y : 0.08	x : 0.07	v : 0.05	f : 0.05	b : 0.05	a : 0.02	i : 0.01	= : 0.01	
e : 0.23	d : 0.13	c : 0.13	g : 0.11	f : 0.11	w : 0.05	b : 0.05	x : 0.04	] : 0.04	y : 0.02	i : 0.01	= : 0.01	
e : 0.27	f : 0.16	c : 0.16	d : 0.14	g : 0.11	= : 0.02	i : 0.02	y : 0.01	a : 0.01	b : 0.01	x : 0.01	] : 0.01	
e : 0.27	d : 0.19	f : 0.17	g : 0.11	] : 0.07	c : 0.05	= : 0.02	i : 0.02	b : 0.01	2 : 0.01	4 : 0.01	
e : 0.27	f : 0.19	g : 0.11	d : 0.08	] : 0.07	c : 0.07	b : 0.05	= : 0.02	4 : 0.02	i : 0.02	2 : 0.01	a : 0.01	
e : 0.20	f : 0.19	g : 0.13	d : 0.08	c : 0.07	] : 0.05	4 : 0.04	b : 0.04	= : 0.02	3 : 0.02	2 : 0.02	i : 0.02	a : 0.01	E : 0.01	: : 0.01	

#score	1467.6205105456518
#seq	68
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF242WEP_DGCR8_UTR_m2_run1.txt

#BEAR
ccc[ffffffuuuuuuuuuuuuffffffccc2	chr1:2122104-2122376(-)$1	272	185	217	19.6218
b!!hhhhhhhhttttttttttthhhhhhhhbb	chr7:77166501-77166754(+)$1	253	150	182	17.7024
ccc$$$$$cccsssssssssscccccc]gggg	chr3:49051134-49051365(+)$1	231	139	171	14.7347
[bb!!eeeeeuuuuuuuuuuuueeeee22bb]	chr22:41487714-41487983(+)$1	269	155	187	20.3571
hhhhbbbb[cccssssssssssccc]bb]bb]	chr16:30205863-30206161(+)$1	298	239	271	13.2478
ddd!!gggggggssssssssssggggggg22d	chr22:20073169-20073386(+)$1	217	126	158	16.4075
bb==========rrrrrrrrr==========]	chr12:62997101-62997376(+)$1	275	87	119	14.7769
cc[dddd[eeeeerrrrrrrrreeeeedddd]	chr17:28444012-28444237(+)$1	225	111	143	13.9414
+ffffff[ddddssssssssssddddffffff	chr11:64655562-64655835(-)$1	273	100	132	13.5381
bb==========rrrrrrrrr==========]	chr12:62997004-62997266(+)$1	262	184	216	14.7769
f[ccc[eeeeeassssssssssa]eeeee]cc	chr17:74380818-74381068(+)$1	250	41	73	15.8795
hhh[cccddddtttttttttttdddd]ccc22	chr12:46751926-46752163(-)$1	237	173	205	19.5523
gdddd!!ddddtttttttttttdddd22dddd	chr3:50103764-50104027(+)$1	263	190	222	18.9324
fffff[eeeeettttttttttteeeeefffff	chr3:49049769-49049982(+)$1	213	11	43	19.8605
c[a[a"""bbvvvvvvvvvvvvvbb4444a]a	chr2:191513649-191513904(+)$1	255	106	138	19.1568
c!!ccc!!bbbbssssssssssbb]bb]ccc]	chr2:27435069-27435327(+)$1	258	153	185	14.2335
eeeeeeeeeeuuuuuuuuuuuueeeee22eee	chr17:7082186-7082421(-)$1	235	176	208	19.8864
[bb!!ffffffssssssssssffffff]bbcc	chr17:80192616-80192893(+)$1	277	37	69	14.3058
beeeee!!bbcccrrrrrrrrrccc]bb]eee	chr1:1284336-1284625(-)$1	289	177	209	12.6524
[dddd[ddddvvvvvvvvvvvvvdddd]dddd	chr12:46752325-46752581(-)$1	256	60	92	19.1458
ccc!!ddddvvvvvvvvvvvvvdddd]cccdd	chr19:46142219-46142514(-)$1	295	201	233	20.3580
="""bb!!cccvvvvvvvvvvvvvccc333bb	chr22:41487787-41488063(+)$1	276	10	42	19.3976
eee[gggggggtttttttttttgggggggeee	chr20:62572718-62572941(-)$1	223	68	100	21.2654
ccc[ggggggg!!aooooooa22ggggggg]c	chr22:20073318-20073575(+)$1	257	0	32	9.6371
eee[gggggggtttttttttttgggggggeee	chr20:62572741-62572967(-)$1	226	94	126	21.2654
ii!!eeeeevvvvvvvvvvvvveeeee]iiii	chr9:97848234-97848470(+)$1	236	87	119	21.5202
ccc!!ddddvvvvvvvvvvvvvdddd]cccdd	chr19:46142163-46142419(-)$1	256	106	138	20.3580
bb####eeeeerrrrrrrrreeeeebb]ffff	chr1:33283229-33283505(+)$1	276	176	208	12.5563
eee[gggggggtttttttttttgggggggeee	chr20:62572812-62573062(-)$1	250	189	221	21.2654
cc[dddd[eeeeerrrrrrrrreeeeedddd]	chr17:28444058-28444277(+)$1	219	65	97	13.9414
cciiiiiiiii[aooooooa]iiiiiiiii]c	chr11:69468829-69469091(+)$1	262	227	259	9.1551
ii!!eeeeevvvvvvvvvvvvveeeee]iiii	chr9:97848200-97848433(+)$1	233	121	153	21.5202
gg::gggggggwwwwwwwwwwwwwwggggggg	chr11:118965236-118965513(-)$1	277	207	239	17.7766
+++++eeeeeuuuuuuuuuuuueeeee>>>>>	chr10:60936916-60937195(+)$1	279	194	226	16.3494
ccc[gggggggvvvvvvvvvvvvvggggggg]	chr20:62588893-62589132(-)$1	239	67	99	21.3114
hhhhhhhffffffrrrrrrrrrffffff22hh	chr1:205418898-205419147(-)$1	249	112	144	12.0648
hhhhhhhffffffrrrrrrrrrffffff22hh	chr1:205418851-205419098(-)$1	247	63	95	12.0648
[ffffff!!cccrrrrrrrrrccc333fffff	chr12:133405149-133405398(-)$1	249	133	165	12.9526
cc::eeeee[avvvvvvvvvvvvva]eeeee:	chr12:62997066-62997288(+)$1	222	39	71	17.1371
ffff[ddddvvvvvvvvvvvvvdddd333fff	chr17:28443848-28444132(+)$1	284	73	105	19.4384
eeee[ddddvvvvvvvvvvvvvddddeeeee:	chr16:70696327-70696570(-)$1	243	66	98	18.6229
eee"""gggggggrrrrrrrrrggggggg333	chr3:49058551-49058770(-)$1	219	104	136	14.6348
ddd!!gggggggssssssssssggggggg22d	chr22:20073099-20073352(+)$1	253	196	228	16.4075
::eeeee!!bbtttttttttttbb22eeeeee	chr17:57917893-57918130(+)$1	237	37	69	16.8080
ii!!eeeeevvvvvvvvvvvvveeeee]iiii	chr9:97848151-97848358(+)$1	207	170	202	21.5202
ddd!!gggggggssssssssssggggggg22d	chr22:20073193-20073443(+)$1	250	102	134	16.4075
cc[dddd[eeeeerrrrrrrrreeeeedddd]	chr17:28444041-28444258(+)$1	217	82	114	13.9414
cc[dddd[eeeeerrrrrrrrreeeeedddd]	chr17:28443952-28444188(+)$1	236	171	203	13.9414
ddd!!gggggggssssssssssggggggg22d	chr22:20073152-20073369(+)$1	217	143	175	16.4075
!bb[gggggggtttttttttttgggggggbbe	chr3:184079613-184079862(+)$1	249	34	66	20.7602

#otherMatches

#Seq PSSM
CAGCAGUGGCGUGUGAGGGAUGGUCACUCUGA	chr1:2122104-2122376(-)$1	272	185	217	19.6218
GCUGCUCCUGGAAGUUGUGGUGUCGGGAGCCC	chr7:77166501-77166754(+)$1	253	150	182	17.7024
UGUUUGUAACCAUAUCUCCUCGGUACGUGCUG	chr3:49051134-49051365(+)$1	231	139	171	14.7347
GCUAACUGCGGGAGCCAGAGAGUGCGGAGGGG	chr22:41487714-41487983(+)$1	269	155	187	20.3571
CGCCCUUCGGGUAAGGAAGGAGACCGGGCAGC	chr16:30205863-30206161(+)$1	298	239	271	13.2478
AAUUGAGGCAGUGGUUCUAAAAGCUGUCUACA	chr22:20073169-20073386(+)$1	217	126	158	16.4075
CACCGCCGCUUUUCUCUCUUCAGAGCGGUGGC	chr12:62997101-62997376(+)$1	275	87	119	14.7769
GAGCGAGACUUUUCUAUUUUCCAAAAGCUCGG	chr17:28444012-28444237(+)$1	225	111	143	13.9414
GCCCAGGCGGGGAGGAGUAAAGCCUCCCUGGG	chr11:64655562-64655835(-)$1	273	100	132	13.5381
CACCGCCGCUUUUCUCUCUUCAGAGCGGUGGC	chr12:62997004-62997266(+)$1	262	184	216	14.7769
CGCCUCCCCAGCAAACCGGACCGACUGGGUAG	chr17:74380818-74381068(+)$1	250	41	73	15.8795
AAAUACAUGCUUAAUCCUGAGUAGCAGUGUUu	chr12:46751926-46752163(-)$1	237	173	205	19.5523
UGCCCUUUCAAACUGUUGACUCUUggccgggc	chr3:50103764-50104027(+)$1	263	190	222	18.9324
AUCAGUGCAGGAGAGGAUUGUGUCUGCUUGGU	chr3:49049769-49049982(+)$1	213	11	43	19.8605
cggggaaggcaggggaggggagggcaaggcgc	chr2:191513649-191513904(+)$1	255	106	138	19.1568
CAAGGGAACGGAAAAUGGCGCCUCACGACCCG	chr2:27435069-27435327(+)$1	258	153	185	14.2335
cgucucuacuaaaauacaaaaaaguagccagg	chr17:7082186-7082421(-)$1	235	176	208	19.8864
ACGGGGGACCCACCGGGUCAGGGGUCUGCGGA	chr17:80192616-80192893(+)$1	277	37	69	14.3058
gccAUGGCGGAGACCAAGAUUAUCUACCACAU	chr1:1284336-1284625(-)$1	289	177	209	12.6524
GUACAUAUAUUGUCUGUCCAUAUGUAUUUGUA	chr12:46752325-46752581(-)$1	256	60	92	19.1458
cuuaggcucugcaagauCAACCGAGCAAAGCA	chr19:46142219-46142514(-)$1	295	201	233	20.3580
UGUGCUAGGCUGGGGGGGAGAGAGGGCGAGAG	chr22:41487787-41488063(+)$1	276	10	42	19.3976
CCCACUUCUGCUUCCUCUUAGCGCAGGAGGGG	chr20:62572718-62572941(-)$1	223	68	100	21.2654
CUGUCUACAUUAAUGAAAAGAGCAAUGUGGCC	chr22:20073318-20073575(+)$1	257	0	32	9.6371
CCCACUUCUGCUUCCUCUUAGCGCAGGAGGGG	chr20:62572741-62572967(-)$1	226	94	126	21.2654
GAUAUCAGUUCUCAUUUUACACACUGGCUCAG	chr9:97848234-97848470(+)$1	236	87	119	21.5202
cuuaggcucugcaagauCAACCGAGCAAAGCA	chr19:46142163-46142419(-)$1	256	106	138	20.3580
GCCCACGCCCUGCUGCGAGAAGGGCGCGUUCU	chr1:33283229-33283505(+)$1	276	176	208	12.5563
CCCACUUCUGCUUCCUCUUAGCGCAGGAGGGG	chr20:62572812-62573062(-)$1	250	189	221	21.2654
GAGCGAGACUUUUCUAUUUUCCAAAAGCUCGG	chr17:28444058-28444277(+)$1	219	65	97	13.9414
UGCACGGGGCACAGCGGAGUCUGUCCUGUGAC	chr11:69468829-69469091(+)$1	262	227	259	9.1551
GAUAUCAGUUCUCAUUUUACACACUGGCUCAG	chr9:97848200-97848433(+)$1	233	121	153	21.5202
GUUCGUGACUCAGCCGCCCCAUCCCGAGUCGC	chr11:118965236-118965513(-)$1	277	207	239	17.7766
UUCCCCCAACACACACACACUAGUUGGCAUUC	chr10:60936916-60937195(+)$1	279	194	226	16.3494
ACUUGGCCCUUGGGGAGAAGAGAAGAGGGUCU	chr20:62588893-62589132(-)$1	239	67	99	21.3114
GCGGACUGCGAGGGAAAGGGGGCCUUGUUGAG	chr1:205418898-205419147(-)$1	249	112	144	12.0648
GCGGACUGCGAGGGAAAGGGGGCCUUGUUGAG	chr1:205418851-205419098(-)$1	247	63	95	12.0648
UGGCGGGACGGCCCCGUUCCAGUCACCCCCGC	chr12:133405149-133405398(-)$1	249	133	165	12.9526
UUUUGCCGCCCAUUUCCUGCUUUCGAGCGGCU	chr12:62997066-62997288(+)$1	222	39	71	17.1371
AACUACGGCGACUGUAUCUUUGGCCGAGGAGU	chr17:28443848-28444132(+)$1	284	73	105	19.4384
CUACUGUUCUCUCCAGUGUCUCGAGCGUAGCC	chr16:70696327-70696570(-)$1	243	66	98	18.6229
CGCGGGGCCGGGCGAGCGGGAAGCUCGGCACA	chr3:49058551-49058770(-)$1	219	104	136	14.6348
AAUUGAGGCAGUGGUUCUAAAAGCUGUCUACA	chr22:20073099-20073352(+)$1	253	196	228	16.4075
AAGACAUCUUUAAUCAUUCCAAAAUUGUGUCC	chr17:57917893-57918130(+)$1	237	37	69	16.8080
GAUAUCAGUUCUCAUUUUACACACUGGCUCAG	chr9:97848151-97848358(+)$1	207	170	202	21.5202
AAUUGAGGCAGUGGUUCUAAAAGCUGUCUACA	chr22:20073193-20073443(+)$1	250	102	134	16.4075
GAGCGAGACUUUUCUAUUUUCCAAAAGCUCGG	chr17:28444041-28444258(+)$1	217	82	114	13.9414
GAGCGAGACUUUUCUAUUUUCCAAAAGCUCGG	chr17:28443952-28444188(+)$1	236	171	203	13.9414
AAUUGAGGCAGUGGUUCUAAAAGCUGUCUACA	chr22:20073152-20073369(+)$1	217	143	175	16.4075
UGGAGGGGCCGGCCCGGGUUCGCGGUUCCCCG	chr3:184079613-184079862(+)$1	249	34	66	20.7602

#DB
(((.((((((............))))))))).	chr1:2122104-2122376(-)$1	1	185	217	19.6218
(..((((((((...........))))))))))	chr7:77166501-77166754(+)$1	1	150	182	17.7024
(((.....(((..........)))))).))))	chr3:49051134-49051365(+)$1	1	139	171	14.7347
.((..(((((............)))))..)).	chr22:41487714-41487983(+)$1	1	155	187	20.3571
((((((((.(((..........))).)).)).	chr16:30205863-30206161(+)$1	1	239	271	13.2478
(((..(((((((..........)))))))..)	chr22:20073169-20073386(+)$1	1	126	158	16.4075
((((((((((((.........)))))))))).	chr12:62997101-62997376(+)$1	1	87	119	14.7769
((.((((.(((((.........))))))))).	chr17:28444012-28444237(+)$1	1	111	143	13.9414
.((((((.((((..........))))))))))	chr11:64655562-64655835(-)$1	1	100	132	13.5381
((((((((((((.........)))))))))).	chr12:62997004-62997266(+)$1	1	184	216	14.7769
(.(((.((((((..........).))))).))	chr17:74380818-74381068(+)$1	1	41	73	15.8795
(((.(((((((...........)))).)))..	chr12:46751926-46752163(-)$1	1	173	205	19.5523
(((((..((((...........))))..))))	chr3:50103764-50104027(+)$1	1	190	222	18.9324
(((((.(((((...........))))))))))	chr3:49049769-49049982(+)$1	1	11	43	19.8605
(.(.(...((.............))....).)	chr2:191513649-191513904(+)$1	1	106	138	19.1568
(..(((..((((..........)).)).))).	chr2:27435069-27435327(+)$1	1	153	185	14.2335
((((((((((............)))))..)))	chr17:7082186-7082421(-)$1	1	176	208	19.8864
.((..((((((..........)))))).))))	chr17:80192616-80192893(+)$1	1	37	69	14.3058
((((((..(((((.........))).)).)))	chr1:1284336-1284625(-)$1	1	177	209	12.6524
.((((.((((.............)))).))))	chr12:46752325-46752581(-)$1	1	60	92	19.1458
(((..((((.............)))).)))))	chr19:46142219-46142514(-)$1	1	201	233	20.3580
(...((..(((.............)))...))	chr22:41487787-41488063(+)$1	1	10	42	19.3976
(((.(((((((...........))))))))))	chr20:62572718-62572941(-)$1	1	68	100	21.2654
(((.(((((((..(......)..))))))).)	chr22:20073318-20073575(+)$1	1	0	32	9.6371
(((.(((((((...........))))))))))	chr20:62572741-62572967(-)$1	1	94	126	21.2654
((..(((((.............))))).))))	chr9:97848234-97848470(+)$1	1	87	119	21.5202
(((..((((.............)))).)))))	chr19:46142163-46142419(-)$1	1	106	138	20.3580
((....(((((.........))))))).))))	chr1:33283229-33283505(+)$1	1	176	208	12.5563
(((.(((((((...........))))))))))	chr20:62572812-62573062(-)$1	1	189	221	21.2654
((.((((.(((((.........))))))))).	chr17:28444058-28444277(+)$1	1	65	97	13.9414
(((((((((((.(......).))))))))).)	chr11:69468829-69469091(+)$1	1	227	259	9.1551
((..(((((.............))))).))))	chr9:97848200-97848433(+)$1	1	121	153	21.5202
))..(((((((..............)))))))	chr11:118965236-118965513(-)$1	1	207	239	17.7766
.....(((((............))))).....	chr10:60936916-60937195(+)$1	1	194	226	16.3494
(((.(((((((.............))))))).	chr20:62588893-62589132(-)$1	1	67	99	21.3114
(((((((((((((.........))))))..))	chr1:205418898-205419147(-)$1	1	112	144	12.0648
(((((((((((((.........))))))..))	chr1:205418851-205419098(-)$1	1	63	95	12.0648
.((((((..(((.........)))...)))))	chr12:133405149-133405398(-)$1	1	133	165	12.9526
))..(((((.(.............).))))).	chr12:62997066-62997288(+)$1	1	39	71	17.1371
((((.((((.............))))...)))	chr17:28443848-28444132(+)$1	1	73	105	19.4384
((((.((((.............))))))))).	chr16:70696327-70696570(-)$1	1	66	98	18.6229
(((...(((((((.........)))))))...	chr3:49058551-49058770(-)$1	1	104	136	14.6348
(((..(((((((..........)))))))..)	chr22:20073099-20073352(+)$1	1	196	228	16.4075
..(((((..((...........))..)))))(	chr17:57917893-57918130(+)$1	1	37	69	16.8080
((..(((((.............))))).))))	chr9:97848151-97848358(+)$1	1	170	202	21.5202
(((..(((((((..........)))))))..)	chr22:20073193-20073443(+)$1	1	102	134	16.4075
((.((((.(((((.........))))))))).	chr17:28444041-28444258(+)$1	1	82	114	13.9414
((.((((.(((((.........))))))))).	chr17:28443952-28444188(+)$1	1	171	203	13.9414
(((..(((((((..........)))))))..)	chr22:20073152-20073369(+)$1	1	143	175	16.4075
.((.(((((((...........))))))))))	chr3:184079613-184079862(+)$1	1	34	66	20.7602

#PSSM
c : 0.27	e : 0.12	b : 0.10	[ : 0.08	h : 0.08	d : 0.08	f : 0.06	i : 0.06	+ : 0.04	g : 0.04	= : 0.02	: : 0.02	! : 0.02	
c : 0.23	e : 0.14	b : 0.12	d : 0.12	h : 0.08	f : 0.08	i : 0.06	! : 0.04	[ : 0.04	" : 0.02	g : 0.02	+ : 0.02	: : 0.02	
e : 0.16	c : 0.14	d : 0.12	! : 0.10	h : 0.08	[ : 0.08	f : 0.08	b : 0.06	= : 0.04	: : 0.04	a : 0.02	" : 0.02	# : 0.02	i : 0.02	+ : 0.02	
! : 0.21	[ : 0.18	d : 0.12	h : 0.08	f : 0.08	e : 0.08	= : 0.04	c : 0.04	" : 0.04	: : 0.04	$ : 0.02	# : 0.02	i : 0.02	+ : 0.02	
! : 0.16	e : 0.14	g : 0.14	d : 0.12	f : 0.08	h : 0.06	c : 0.06	b : 0.04	= : 0.04	[ : 0.04	$ : 0.02	a : 0.02	# : 0.02	i : 0.02	+ : 0.02	" : 0.02	
g : 0.21	e : 0.18	d : 0.16	f : 0.08	h : 0.06	[ : 0.06	b : 0.04	= : 0.04	c : 0.04	" : 0.04	$ : 0.02	! : 0.02	# : 0.02	i : 0.02	
g : 0.23	e : 0.21	d : 0.18	f : 0.08	! : 0.08	h : 0.06	= : 0.04	$ : 0.02	b : 0.02	c : 0.02	" : 0.02	i : 0.02	
g : 0.23	e : 0.19	d : 0.14	[ : 0.10	! : 0.10	f : 0.08	= : 0.04	h : 0.02	$ : 0.02	b : 0.02	" : 0.02	i : 0.02	
e : 0.27	g : 0.23	d : 0.16	f : 0.08	b : 0.06	c : 0.04	= : 0.04	! : 0.04	h : 0.02	[ : 0.02	i : 0.02	
g : 0.23	e : 0.19	v : 0.14	f : 0.08	c : 0.08	d : 0.08	b : 0.08	= : 0.04	h : 0.02	i : 0.02	[ : 0.02	
g : 0.23	v : 0.18	e : 0.14	c : 0.10	u : 0.08	d : 0.06	f : 0.06	= : 0.04	b : 0.04	h : 0.02	i : 0.02	a : 0.02	
v : 0.23	t : 0.18	g : 0.10	u : 0.08	e : 0.08	c : 0.06	s : 0.04	= : 0.04	f : 0.04	d : 0.02	a : 0.02	b : 0.02	! : 0.02	r : 0.02	[ : 0.02	w : 0.02	
v : 0.23	s : 0.19	t : 0.18	u : 0.08	r : 0.08	e : 0.08	f : 0.04	c : 0.02	! : 0.02	a : 0.02	w : 0.02	g : 0.02	
r : 0.23	v : 0.23	s : 0.19	t : 0.18	u : 0.08	a : 0.02	o : 0.02	w : 0.02	
r : 0.23	v : 0.23	s : 0.19	t : 0.18	u : 0.08	o : 0.04	w : 0.02	
r : 0.23	v : 0.23	s : 0.19	t : 0.18	u : 0.08	o : 0.04	w : 0.02	
r : 0.23	v : 0.23	s : 0.19	t : 0.18	u : 0.08	o : 0.04	w : 0.02	
r : 0.23	v : 0.23	s : 0.19	t : 0.18	u : 0.08	o : 0.04	w : 0.02	
r : 0.23	v : 0.23	s : 0.19	t : 0.18	u : 0.08	o : 0.04	w : 0.02	
r : 0.23	v : 0.23	s : 0.19	t : 0.18	u : 0.08	o : 0.02	a : 0.02	w : 0.02	
v : 0.23	r : 0.21	s : 0.19	t : 0.18	u : 0.08	a : 0.02	e : 0.02	] : 0.02	w : 0.02	
v : 0.23	t : 0.18	s : 0.16	r : 0.16	u : 0.08	c : 0.04	= : 0.04	f : 0.02	2 : 0.02	e : 0.02	i : 0.02	w : 0.02	
e : 0.23	g : 0.18	d : 0.14	v : 0.10	f : 0.08	c : 0.08	= : 0.04	b : 0.04	h : 0.02	a : 0.02	2 : 0.02	i : 0.02	w : 0.02	
e : 0.23	g : 0.19	d : 0.16	f : 0.08	c : 0.08	b : 0.06	v : 0.06	= : 0.04	h : 0.02	] : 0.02	i : 0.02	w : 0.02	
e : 0.25	g : 0.21	d : 0.16	f : 0.08	c : 0.08	= : 0.04	h : 0.02	b : 0.02	] : 0.02	i : 0.02	w : 0.02	3 : 0.02	a : 0.02	2 : 0.02	
e : 0.23	g : 0.23	d : 0.16	f : 0.08	] : 0.06	c : 0.04	= : 0.04	b : 0.04	h : 0.02	4 : 0.02	i : 0.02	3 : 0.02	2 : 0.02	
e : 0.30	g : 0.23	f : 0.10	b : 0.08	] : 0.06	c : 0.04	= : 0.04	3 : 0.04	h : 0.02	2 : 0.02	4 : 0.02	d : 0.02	i : 0.02	
g : 0.23	] : 0.16	f : 0.12	d : 0.08	e : 0.08	2 : 0.06	c : 0.06	b : 0.04	= : 0.04	3 : 0.04	h : 0.02	4 : 0.02	i : 0.02	> : 0.02	
g : 0.25	d : 0.12	c : 0.10	2 : 0.08	f : 0.08	e : 0.08	i : 0.08	] : 0.04	= : 0.04	3 : 0.04	h : 0.02	4 : 0.02	b : 0.02	> : 0.02	
e : 0.16	2 : 0.12	d : 0.12	c : 0.10	f : 0.10	g : 0.08	b : 0.08	i : 0.08	= : 0.04	3 : 0.04	h : 0.02	] : 0.02	a : 0.02	> : 0.02	
d : 0.16	e : 0.16	b : 0.10	2 : 0.10	f : 0.10	c : 0.08	g : 0.06	] : 0.06	i : 0.06	= : 0.04	h : 0.04	> : 0.02	3 : 0.02	
] : 0.19	d : 0.16	e : 0.14	f : 0.10	c : 0.08	i : 0.06	2 : 0.04	b : 0.04	g : 0.04	h : 0.04	: : 0.04	a : 0.02	> : 0.02	3 : 0.02	

#score	843.4988832070865
#seq	50
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF310NDD_FXR1_UTR_m3_run2.txt

#BEAR
hhhhhhqqqqqqqqhhhh	chrX:153588477-153588699(-)$1	222	175	193	13.2268
ff!!bbqqqqqqqqbb33	chr8:95507864-95508191(-)$1	327	16	34	12.8412
ffffffqqqqqqqqffff	chr17:26941907-26942156(-)$1	249	110	128	12.9915
ceeeeeqqqqqqqqeeee	chr5:154173643-154173903(+)$1	260	162	180	13.6996
b!!cccqqqqqqqqcccb	chr14:102505284-102505563(+)$1	279	159	177	13.7945
hhhhhhqqqqqqqqhhhh	chr9:95027191-95027439(-)$1	248	6	24	13.2268
hhhhhhqqqqqqqqhhhh	chr2:54147933-54148285(-)$1	352	135	153	13.2268
hhhhhhqqqqqqqqhhhh	chrX:153588499-153588717(-)$1	218	193	211	13.2268
::ddddqqqqqqqqdddd	chr20:57480337-57480617(+)$1	280	107	125	11.6128
e[ddddqqqqqqqqdddd	chr9:95025191-95025434(-)$1	243	209	227	13.5717
hhhhhhqqqqqqqqhhhh	chrX:153587999-153588209(-)$1	210	2	20	13.2268
ffffffqqqqqqqqffff	chrX:153582688-153582928(-)$1	240	149	167	12.9915
ffffffqqqqqqqqffff	chrX:153582649-153582869(-)$1	220	90	108	12.9915
======qqqqqqqq====	chrX:41055788-41056054(+)$1	266	241	259	13.9576
ffff[aqqqqqqqqa]ff	chr12:111159858-111160173(-)$1	315	251	269	13.2473
ddd[bbqqqqqqqqbb]d	chr3:184046322-184046643(+)$1	321	96	114	12.6460
!eeeeeqqqqqqqqeeee	chrX:153587252-153587467(-)$1	215	87	105	13.7851
cc[cccqqqqqqqqcccc	chr17:80443281-80443579(+)$1	298	76	94	14.2388
hhhhhhqqqqqqqqhhhh	chrX:153588436-153588652(-)$1	216	128	146	13.2268
ggggggqqqqqqqqgggg	chr16:24104010-24104311(+)$1	301	234	252	14.0899
iiiiiaqqqqqqqqa]ii	chrX:153578388-153578617(-)$1	229	153	171	14.0179
ffffffqqqqqqqqffff	chrX:153586473-153586712(-)$1	239	186	204	12.9915
ggggggqqqqqqqqgggg	chr10:120840125-120840381(-)$1	256	197	215	14.0899
iiiiiiqqqqqqqqiiii	chrX:153588069-153588296(-)$1	227	89	107	14.1571
::ddddqqqqqqqqdddd	chr16:58557187-58557457(-)$1	270	14	32	11.6128
[eeeeeqqqqqqqqeeee	chr2:61709417-61709698(-)$1	281	35	53	13.7723
deeeeeqqqqqqqqeeee	chr2:61719072-61719315(-)$1	243	215	233	13.4977
[a!!bbqqqqqqqqbb22	chr17:80426592-80426872(+)$1	280	81	99	12.7463
$eeeeeqqqqqqqqeeee	chr6:37142744-37142987(+)$1	243	202	220	13.4677
iiiiiiqqqqqqqqiiii	chrX:153588122-153588350(-)$1	228	143	161	14.1571
!a[cccqqqqqqqqccc]	chrX:153588154-153588366(-)$1	212	43	61	14.3810
b!!cccqqqqqqqqccc2	chrX:153582948-153583158(-)$1	210	105	123	13.8836
ccccccqqqqqqqqccc2	chr14:102550153-102550407(-)$1	254	184	202	13.9684
hhhhhhqqqqqqqqhhhh	chr3:184052427-184052731(+)$1	304	40	58	13.2268
ffffffqqqqqqqqffff	chrX:153586712-153586914(-)$1	202	12	30	12.9915
b[ddddqqqqqqqqdddd	chrX:153590835-153591046(-)$1	211	123	141	13.4822
ddddddqqqqqqqqdddd	chr1:52260081-52260381(-)$1	300	278	296	13.2772
bb[cccqqqqqqqqcccb	chrX:153586741-153586982(-)$1	241	62	80	13.5064
ceeeeeqqqqqqqqeeee	chr1:19426007-19426246(-)$1	239	141	159	13.6996
e!!cccqqqqqqqqccc]	chr9:95021123-95021378(-)$1	255	21	39	14.2091
cc[cccqqqqqqqqccc]	chr3:184040092-184040336(+)$1	244	36	54	14.3143
!eeeeeqqqqqqqqeeee	chrX:153587318-153587574(-)$1	256	194	212	13.7851
ccccccqqqqqqqqccc7	chr9:95040426-95040645(-)$1	219	83	101	13.5333
dddd[aqqqqqqqqaddd	chr3:184049644-184049881(+)$1	237	77	95	13.3508
e:ddddqqqqqqqqdddd	chrX:153590344-153590576(-)$1	232	175	193	12.4937
ggddddqqqqqqqqdddd	chr17:45734128-45734382(+)$1	254	110	128	13.6899
ffffffqqqqqqqqffff	chrX:153582746-153582951(-)$1	205	172	190	12.9915
""ddddqqqqqqqqdddd	chr18:29437507-29437935(-)$1	428	95	113	13.5816
ffffffqqqqqqqqffff	chr2:61720022-61720289(-)$1	267	132	150	12.9915
ccddddqqqqqqqqdddd	chr9:114134609-114134882(-)$1	273	156	174	13.6477
ggg!!aqqqqqqqqa22g	chr12:6716408-6716648(-)$1	240	111	129	13.4007
ffffffqqqqqqqqffff	chr3:184044940-184045270(+)$1	330	28	46	12.9915
hhhhhhqqqqqqqqhhhh	chr9:94985535-94985798(-)$1	263	183	201	13.2268
ggggbbqqqqqqqqbb]g	chrX:153583150-153583381(-)$1	231	176	194	13.1858
ebb!!aqqqqqqqqa22b	chr3:184049690-184049945(+)$1	255	111	129	12.2761
eee[bbqqqqqqqqbb]e	chr3:127323719-127324022(+)$1	303	12	30	12.8821
"eeeeeqqqqqqqqeeee	chr3:184041639-184041865(+)$1	226	72	90	13.6877
ccccccqqqqqqqqccc7	chr9:95040408-95040626(-)$1	218	64	82	13.5333
iiiiiiqqqqqqqqiiii	chrX:153588009-153588225(-)$1	216	18	36	14.1571
!a[cccqqqqqqqqccc]	chrX:153588258-153588467(-)$1	209	144	162	14.3810
%%ddddqqqqqqqqdddd	chrX:41204335-41204654(+)$1	319	61	79	12.2287
""ddddqqqqqqqqdddd	chr16:9016971-9017291(-)$1	320	286	304	13.5816
ceeeeeqqqqqqqqeeee	chr5:154173579-154173843(+)$1	264	226	244	13.6996
ccccccqqqqqqqqccc7	chr9:95040395-95040608(-)$1	213	46	64	13.5333
"eeeeeqqqqqqqqeeee	chr1:19431023-19431257(-)$1	234	175	193	13.6877
!!ddddqqqqqqqqdddd	chr6:64421776-64422067(+)$1	291	205	223	13.8049

#otherMatches

#Seq PSSM
UGAUGGCACGCACACCAU	chrX:153588477-153588699(-)$1	222	175	193	13.2268
GUUUACAGACAUAAGUUU	chr8:95507864-95508191(-)$1	327	16	34	12.8412
CUCUGGCUCAGGCUCCAG	chr17:26941907-26942156(-)$1	249	110	128	12.9915
UACAUCAAGCGCCAGAUG	chr5:154173643-154173903(+)$1	260	162	180	13.6996
GAACCUGAAGAGAGAGGC	chr14:102505284-102505563(+)$1	279	159	177	13.7945
UAGAAAUGACUACUUUUC	chr9:95027191-95027439(-)$1	248	6	24	13.2268
GUUACACUCUGUCUUGUA	chr2:54147933-54148285(-)$1	352	135	153	13.2268
UGAUGGCACGCACACCAU	chrX:153588499-153588717(-)$1	218	193	211	13.2268
AUGAGCAUGCCAAGGCUC	chr20:57480337-57480617(+)$1	280	107	125	11.6128
GGUGGAACUUUGUCUCCA	chr9:95025191-95025434(-)$1	243	209	227	13.5717
CGCACGUCAAGGCCCGUG	chrX:153587999-153588209(-)$1	210	2	20	13.2268
CCCUUCACCAUCAAGAAG	chrX:153582688-153582928(-)$1	240	149	167	12.9915
CCCUUCACCAUCAAGAAG	chrX:153582649-153582869(-)$1	220	90	108	12.9915
AGUAAAUAGAAUGUUUUA	chrX:41055788-41056054(+)$1	266	241	259	13.9576
CAUGAUUUCCUUUUAAUA	chr12:111159858-111160173(-)$1	315	251	269	13.2473
GUUGUAUGAAAUCUUGGA	chr3:184046322-184046643(+)$1	321	96	114	12.6460
AUUGCAGGUCAAAGUGCA	chrX:153587252-153587467(-)$1	215	87	105	13.7851
GUGUUCAUUUUGUAGAAA	chr17:80443281-80443579(+)$1	298	76	94	14.2388
UGAUGGCACGCACACCAU	chrX:153588436-153588652(-)$1	216	128	146	13.2268
UGAGUGGAAUGAGACAUU	chr16:24104010-24104311(+)$1	301	234	252	14.0899
CUGGGCAUGGAGGGGACC	chrX:153578388-153578617(-)$1	229	153	171	14.0179
GCGGCUGGAGUGUGGGCU	chrX:153586473-153586712(-)$1	239	186	204	12.9915
CGGCCUAUUUUCAGAGGC	chr10:120840125-120840381(-)$1	256	197	215	14.0899
CGCACGUCAAGGCCCGUG	chrX:153588069-153588296(-)$1	227	89	107	14.1571
CAGACUAAGUCCUAAGUC	chr16:58557187-58557457(-)$1	270	14	32	11.6128
CAUGCAUCAAUUCUUGCA	chr2:61709417-61709698(-)$1	281	35	53	13.7723
AAAUAGGAGGGCAACUAU	chr2:61719072-61719315(-)$1	243	215	233	13.4977
UGUCUGUGUGUCCUCAAU	chr17:80426592-80426872(+)$1	280	81	99	12.7463
UGUGGGGCCCCUCACCUA	chr6:37142744-37142987(+)$1	243	202	220	13.4677
CGCACGUCAAGGCCCGUG	chrX:153588122-153588350(-)$1	228	143	161	14.1571
ACAGGGACCAGAACCCCC	chrX:153588154-153588366(-)$1	212	43	61	14.3810
GCAGCCCCCUCUACGGUC	chrX:153582948-153583158(-)$1	210	105	123	13.8836
UUUGGUCAAAAAAUGCUU	chr14:102550153-102550407(-)$1	254	184	202	13.9684
GGUGGCGGUGGCCAGUCA	chr3:184052427-184052731(+)$1	304	40	58	13.2268
UGAUGGCACCCAGACCGU	chrX:153586712-153586914(-)$1	202	12	30	12.9915
UGUGCCCCUGGAGUGGUA	chrX:153590835-153591046(-)$1	211	123	141	13.4822
CUGGGGAUCAGGGACCCC	chr1:52260081-52260381(-)$1	300	278	296	13.2772
GGACGUGGUAGACAACGC	chrX:153586741-153586982(-)$1	241	62	80	13.5064
UGUACCACGAAUGAGGUA	chr1:19426007-19426246(-)$1	239	141	159	13.6996
UCUCUCAAUAUGUCGAGU	chr9:95021123-95021378(-)$1	255	21	39	14.2091
uauuuauuuauuuuuaau	chr3:184040092-184040336(+)$1	244	36	54	14.3143
AUUGCAGGUCAAAGUGCA	chrX:153587318-153587574(-)$1	256	194	212	13.7851
CCAGAGGACGAUUACUCA	chr9:95040426-95040645(-)$1	219	83	101	13.5333
GUCUUCUUGUAGUUGAGA	chr3:184049644-184049881(+)$1	237	77	95	13.3508
CAUCAUCGACCACCAUGA	chrX:153590344-153590576(-)$1	232	175	193	12.4937
UGGGUACAGAAACUUACC	chr17:45734128-45734382(+)$1	254	110	128	13.6899
CCCUUCACCAUCAAGAAG	chrX:153582746-153582951(-)$1	205	172	190	12.9915
GUUUCUAAACGUCCAGAG	chr18:29437507-29437935(-)$1	428	95	113	13.5816
AACCAGAGGAAGUAUUGG	chr2:61720022-61720289(-)$1	267	132	150	12.9915
GGCAGGAAAACGUACCUG	chr9:114134609-114134882(-)$1	273	156	174	13.6477
GGCCGCGGCGAGGAGGAG	chr12:6716408-6716648(-)$1	240	111	129	13.4007
GCAAGUGAGUGAAAAUUU	chr3:184044940-184045270(+)$1	330	28	46	12.9915
CCACAGCAGGCAGACUGU	chr9:94985535-94985798(-)$1	263	183	201	13.2268
CUUCCAAGUGACGGUGAG	chrX:153583150-153583381(-)$1	231	176	194	13.1858
UGUGACGAGCAGAAGGAG	chr3:184049690-184049945(+)$1	255	111	129	12.2761
UCCCCAGACAGCGAUGAG	chr3:127323719-127324022(+)$1	303	12	30	12.8821
UCAGAGCCCAACUUCUCU	chr3:184041639-184041865(+)$1	226	72	90	13.6877
CCAGAGGACGAUUACUCA	chr9:95040408-95040626(-)$1	218	64	82	13.5333
CGCACGUCAAGGCCCGUG	chrX:153588009-153588225(-)$1	216	18	36	14.1571
ACAGGGACCAGAACCCCC	chrX:153588258-153588467(-)$1	209	144	162	14.3810
CUAAACUCAGGCUUGUUU	chrX:41204335-41204654(+)$1	319	61	79	12.2287
UUGCUGCCUCUACAUAGC	chr16:9016971-9017291(-)$1	320	286	304	13.5816
UACAUCAAGCGCCAGAUG	chr5:154173579-154173843(+)$1	264	226	244	13.6996
CCAGAGGACGAUUACUCA	chr9:95040395-95040608(-)$1	213	46	64	13.5333
ACAGGUAAAGAGCCACCU	chr1:19431023-19431257(-)$1	234	175	193	13.6877
AAUGAGCAGACCAACUCA	chr6:64421776-64422067(+)$1	291	205	223	13.8049

#DB
((((((........))))	chrX:153588477-153588699(-)$1	1	175	193	13.2268
((..((........))..	chr8:95507864-95508191(-)$1	1	16	34	12.8412
((((((........))))	chr17:26941907-26942156(-)$1	1	110	128	12.9915
((((((........))))	chr5:154173643-154173903(+)$1	1	162	180	13.6996
(..(((........))))	chr14:102505284-102505563(+)$1	1	159	177	13.7945
((((((........))))	chr9:95027191-95027439(-)$1	1	6	24	13.2268
((((((........))))	chr2:54147933-54148285(-)$1	1	135	153	13.2268
((((((........))))	chrX:153588499-153588717(-)$1	1	193	211	13.2268
..((((........))))	chr20:57480337-57480617(+)$1	1	107	125	11.6128
(.((((........))))	chr9:95025191-95025434(-)$1	1	209	227	13.5717
((((((........))))	chrX:153587999-153588209(-)$1	1	2	20	13.2268
((((((........))))	chrX:153582688-153582928(-)$1	1	149	167	12.9915
((((((........))))	chrX:153582649-153582869(-)$1	1	90	108	12.9915
((((((........))))	chrX:41055788-41056054(+)$1	1	241	259	13.9576
((((.(........).))	chr12:111159858-111160173(-)$1	1	251	269	13.2473
(((.((........)).)	chr3:184046322-184046643(+)$1	1	96	114	12.6460
.(((((........))))	chrX:153587252-153587467(-)$1	1	87	105	13.7851
((.(((........))))	chr17:80443281-80443579(+)$1	1	76	94	14.2388
((((((........))))	chrX:153588436-153588652(-)$1	1	128	146	13.2268
((((((........))))	chr16:24104010-24104311(+)$1	1	234	252	14.0899
((((((........).))	chrX:153578388-153578617(-)$1	1	153	171	14.0179
((((((........))))	chrX:153586473-153586712(-)$1	1	186	204	12.9915
((((((........))))	chr10:120840125-120840381(-)$1	1	197	215	14.0899
((((((........))))	chrX:153588069-153588296(-)$1	1	89	107	14.1571
..((((........))))	chr16:58557187-58557457(-)$1	1	14	32	11.6128
.(((((........))))	chr2:61709417-61709698(-)$1	1	35	53	13.7723
((((((........))))	chr2:61719072-61719315(-)$1	1	215	233	13.4977
.(..((........))..	chr17:80426592-80426872(+)$1	1	81	99	12.7463
.(((((........))))	chr6:37142744-37142987(+)$1	1	202	220	13.4677
((((((........))))	chrX:153588122-153588350(-)$1	1	143	161	14.1571
.(.(((........))).	chrX:153588154-153588366(-)$1	1	43	61	14.3810
(..(((........))).	chrX:153582948-153583158(-)$1	1	105	123	13.8836
((((((........))).	chr14:102550153-102550407(-)$1	1	184	202	13.9684
((((((........))))	chr3:184052427-184052731(+)$1	1	40	58	13.2268
((((((........))))	chrX:153586712-153586914(-)$1	1	12	30	12.9915
(.((((........))))	chrX:153590835-153591046(-)$1	1	123	141	13.4822
))((((........))))	chr1:52260081-52260381(-)$1	1	278	296	13.2772
((.(((........))))	chrX:153586741-153586982(-)$1	1	62	80	13.5064
((((((........))))	chr1:19426007-19426246(-)$1	1	141	159	13.6996
(..(((........))).	chr9:95021123-95021378(-)$1	1	21	39	14.2091
((.(((........))).	chr3:184040092-184040336(+)$1	1	36	54	14.3143
.(((((........))))	chrX:153587318-153587574(-)$1	1	194	212	13.7851
((((((........))).	chr9:95040426-95040645(-)$1	1	83	101	13.5333
((((.(........))))	chr3:184049644-184049881(+)$1	1	77	95	13.3508
).((((........))))	chrX:153590344-153590576(-)$1	1	175	193	12.4937
))((((........))))	chr17:45734128-45734382(+)$1	1	110	128	13.6899
((((((........))))	chrX:153582746-153582951(-)$1	1	172	190	12.9915
..((((........))))	chr18:29437507-29437935(-)$1	1	95	113	13.5816
((((((........))))	chr2:61720022-61720289(-)$1	1	132	150	12.9915
))((((........))))	chr9:114134609-114134882(-)$1	1	156	174	13.6477
(((..(........)..)	chr12:6716408-6716648(-)$1	1	111	129	13.4007
((((((........))))	chr3:184044940-184045270(+)$1	1	28	46	12.9915
((((((........))))	chr9:94985535-94985798(-)$1	1	183	201	13.2268
((((((........)).)	chrX:153583150-153583381(-)$1	1	176	194	13.1858
(((..(........)..)	chr3:184049690-184049945(+)$1	1	111	129	12.2761
(((.((........)).)	chr3:127323719-127324022(+)$1	1	12	30	12.8821
.(((((........))))	chr3:184041639-184041865(+)$1	1	72	90	13.6877
((((((........))).	chr9:95040408-95040626(-)$1	1	64	82	13.5333
((((((........))))	chrX:153588009-153588225(-)$1	1	18	36	14.1571
.(.(((........))).	chrX:153588258-153588467(-)$1	1	144	162	14.3810
..((((........))))	chrX:41204335-41204654(+)$1	1	61	79	12.2287
..((((........))))	chr16:9016971-9017291(-)$1	1	286	304	13.5816
((((((........))))	chr5:154173579-154173843(+)$1	1	226	244	13.6996
((((((........))).	chr9:95040395-95040608(-)$1	1	46	64	13.5333
.(((((........))))	chr1:19431023-19431257(-)$1	1	175	193	13.6877
..((((........))))	chr6:64421776-64422067(+)$1	1	205	223	13.8049

#PSSM
f : 0.15	c : 0.15	h : 0.12	e : 0.07	! : 0.07	g : 0.07	b : 0.06	d : 0.06	i : 0.06	" : 0.06	: : 0.03	[ : 0.03	= : 0.01	$ : 0.01	% : 0.01	
e : 0.16	f : 0.15	h : 0.12	c : 0.10	g : 0.07	! : 0.06	i : 0.06	: : 0.04	d : 0.04	a : 0.04	[ : 0.03	b : 0.03	" : 0.03	= : 0.01	% : 0.01	
d : 0.21	e : 0.16	f : 0.13	h : 0.12	! : 0.07	[ : 0.07	g : 0.06	i : 0.06	c : 0.06	= : 0.01	b : 0.01	
d : 0.19	c : 0.18	e : 0.15	f : 0.13	h : 0.12	! : 0.06	i : 0.06	g : 0.04	[ : 0.03	= : 0.01	
c : 0.18	d : 0.18	e : 0.15	h : 0.12	f : 0.12	b : 0.07	i : 0.06	[ : 0.03	g : 0.03	! : 0.03	= : 0.01	
c : 0.18	d : 0.18	e : 0.15	h : 0.12	f : 0.12	b : 0.07	a : 0.07	i : 0.04	g : 0.03	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.18	d : 0.18	e : 0.15	h : 0.12	f : 0.12	b : 0.07	a : 0.07	i : 0.04	g : 0.03	= : 0.01	
d : 0.19	c : 0.18	e : 0.15	h : 0.12	f : 0.12	b : 0.07	i : 0.04	] : 0.03	g : 0.03	2 : 0.03	= : 0.01	
d : 0.19	c : 0.18	e : 0.15	f : 0.13	h : 0.12	i : 0.06	] : 0.04	2 : 0.04	g : 0.03	3 : 0.01	= : 0.01	
d : 0.21	e : 0.16	f : 0.13	h : 0.12	g : 0.06	i : 0.06	] : 0.06	b : 0.04	2 : 0.04	7 : 0.04	3 : 0.01	= : 0.01	c : 0.01	

#score	885.5959578993677
#seq	66
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445JRX_GTF2F1_CDS_m2_run2.txt

#BEAR
###eeeee!!bb[aqqqqqqqqa]bb22eeeee33	chr3:45730807-45731097(+)$1	290	199	234	14.1217
[bb[bb!!bb[bbssssssssssbb]bb22bbbbc	chr11:85779666-85779924(-)$1	258	198	233	12.7270
cc[iiiiiiiiiuuuuuuuuuuuuiiiiiiiii]c	chr11:61196970-61197343(-)$1	373	110	145	12.6048
bb[a[ccc!!ddddqqqqqqqqdddd22ccc]a]b	chr6:43596664-43596967(-)$1	303	128	163	14.2722
heeeeeffffff[aqqqqqqqqa]ffffff]eeee	chr16:4744414-4744706(+)$1	292	157	192	13.0206
eeeee!!ccc!!bbrrrrrrrrrbb22ccc22eee	chr8:30669809-30670093(-)$1	284	211	246	12.0155
"""dddd[ffffffssssssssssffffff]dddd	chr12:132414131-132414397(+)$1	266	135	170	12.6831
[bb[bb[gggggggqqqqqqqqggggggg]bb333	chr22:50722989-50723254(-)$1	265	89	124	13.9603
"""dddd[bbddddqqqqqqqqdddd]bb333ddd	chr19:18548486-18548739(-)$1	253	107	142	13.3955
hhhhhhh[bb[bbssssssssssbb]bb]hhhhhh	chr4:39699782-39700060(+)$1	278	15	50	12.3288
d"""bbffffffssssssssssffffff]bbdddd	chr17:79223787-79224036(-)$1	249	108	143	11.6979
eee####bbcccssssssssssccc]bb4444eee	chr16:88709810-88710133(-)$1	323	265	300	13.5902
fff!!a[cccddddqqqqqqqqdddd22cccafff	chr2:242706966-242707229(+)$1	263	218	253	13.8067
b!!dddd[bb!!bbqqqqqqqqbb22bbdddd22b	chr2:27255805-27256119(+)$1	314	199	234	13.2140
:ggggggg[ddddssssssssssdddd]ggggggg	chr16:30537571-30537843(-)$1	272	99	134	13.0887
ff!!a[ccc[ddddqqqqqqqqdddd]ccc]a22f	chr16:4744314-4744569(+)$1	255	163	198	14.5339
d!!dddd"""cccrrrrrrrrrccc22dddd22dd	chr19:10479005-10479316(-)$1	311	192	227	11.4984
eee"""hhhhhhhhqqqqqqqqhhhhhhhh333ee	chr9:140348891-140349204(-)$1	313	172	207	12.0563
hhhhhheeeeecccqqqqqqqqccc22eeeee22h	chr1:205718984-205719212(-)$1	228	119	154	12.9385
========[eeeeeqqqqqqqqeeeee22======	chr22:22049538-22049799(+)$1	261	96	131	14.8272
eeee[ccc"""bbssssssssssbb333ccc]eee	chr17:34171524-34171888(+)$1	364	80	115	15.4381
####dddd[a[bbqqqqqqqqbb]addddiiiiii	chr1:227164964-227165286(+)$1	322	213	248	13.3444
!ccc[ccc[eeeeeqqqqqqqqeeeee]ccc]ccc	chr16:67207687-67207949(+)$1	262	44	79	14.6889
a[ddddbb[cccssssssssssccc]bb]dddd]a	chr4:7012095-7012499(+)$1	404	144	179	13.2550
eeee[ccc"""bbssssssssssbb333ccc]eee	chr17:34171437-34171724(+)$1	287	167	202	15.4381
hhhggggggg!!assssssssssa22ggggggg22	chr21:47613521-47613774(-)$1	253	112	147	14.5286
####dddd[ccc[bbqqqqqqqqbb]cccdddd55	chr5:176916996-176917264(-)$1	268	186	221	11.9403
ffff==========ttttttttttt==========	chr16:88922674-88922975(-)$1	301	155	190	12.5220
[cccccc!!eeeeeqqqqqqqqeeeee333ccc22	chr1:11082210-11082474(+)$1	264	178	213	14.8779
hhhhh!!a####bbqqqqqqqqbb333a22hhhhh	chr8:145693804-145694073(+)$1	269	83	118	13.7966
ee[ccceeeee[bbqqqqqqqqbb]eeeee]ccc]	chr13:115000372-115000688(+)$1	316	266	301	14.0739
ciiiiiiiiiccc[arrrrrrrrra]ccc:bb[cc	chr6:32157479-32157736(-)$1	257	175	210	10.3766
fffffffff!!cccqqqqqqqqccc333ffffff:	chr22:20862367-20862698(+)$1	331	25	60	13.5673
a"""a[ffffff[aqqqqqqqqa]ffffffa4444	chr16:2867255-2867547(+)$1	292	182	217	14.6421
ff"""ccc[a[bbqqqqqqqqbb]a]ccc22ffff	chr8:25315615-25315945(-)$1	330	262	297	14.2943
]cccccc[a"""bbqqqqqqqqbb333a]ccc:::	chr6:29600363-29600664(-)$1	301	223	258	12.6944
[cccccc!!eeeeeqqqqqqqqeeeee333ccc22	chr1:11082274-11082617(+)$1	343	114	149	14.8779
ff[a[eeeee[attttttttttta]eeeee]a22f	chr10:101379902-101380220(-)$1	318	196	231	11.9726
:ccc"""a[a[a[aqqqqqqqqa]a]a]a22ccc:	chr1:984437-984726(+)$1	289	31	66	14.0119
dd[ccc!!ddddwwwwwwwwwwwwwwddddcccdd	chr21:47731345-47731718(-)$1	373	161	196	13.4790
ee"""ccc[ddddqqqqqqqqdddd]ccc333eee	chr5:137688342-137688617(+)$1	275	195	230	14.0350
ffffff[dddd[bbqqqqqqqqbb]dddd]fffff	chr5:138629685-138630019(+)$1	334	14	49	12.5629
$$$$$iiiiiiiiissssssssssiiiiiiiii44	chr4:110745025-110745270(+)$1	245	67	102	14.1478
"""ddddbb[bbssssssssssbbbb]dddd4444	chr16:69165206-69165483(-)$1	277	161	196	12.6933
ccc[ccc[bb[cccqqqqqqqqccc]bb]ccc]cc	chr1:153604193-153604522(-)$1	329	171	206	15.2607
!!============ppppppp============44	chr8:145623238-145623504(-)$1	266	79	114	10.5574
d[a[ffffff[bbssssssssssbb]ffffff]a]	chr12:49392909-49393185(-)$1	276	100	135	14.0735
c[eeeeegggggggssssssssssggggggg]eee	chr21:46927311-46927578(+)$1	267	82	117	13.7129
"bb[a[bbccc[bbrrrrrrrrrbb]ccc22bb]a	chr22:20110066-20110310(+)$1	244	135	170	11.6036
fffffa"""ccc[aqqqqqqqqa]ccc333a]fff	chr17:55333991-55334263(+)$1	272	124	159	14.9364
"""ggggggg[cccqqqqqqqqccc]gggggggee	chr19:6739609-6739897(+)$1	288	43	78	16.2391
fff[eeeee!!cccqqqqqqqqccc22eeeeefff	chr16:31044886-31045235(+)$1	349	174	209	14.0529
f[bb[ccc[eeeeeqqqqqqqqeeeeeccc]bb]f	chr17:37618165-37618454(+)$1	289	235	270	13.8814
ggggggg!!eeeeesssssssssseeeee22gggg	chr19:36516900-36517174(+)$1	274	15	50	13.8311
cc[gggggggxxxxxxxxxxxxxxxggggggg]cc	chr6:33178891-33179177(+)$1	286	238	273	11.8994
eeee[bbccc[cccqqqqqqqqccc]ccc22bb]e	chr9:131102849-131103156(+)$1	307	256	291	14.6992

#otherMatches

#Seq PSSM
GAGGCCUGAGGCGCGGCGGGCGGGGCGGCAGGUGC	chr3:45730807-45731097(+)$1	290	199	234	14.1217
GAGAUCAUGGGGCCCAAGAAAAAGCACCUGGACUG	chr11:85779666-85779924(-)$1	258	198	233	12.7270
GCCGGGUUUGUCGGGAGGGAGCGGGGCGGGCCUAG	chr11:61196970-61197343(-)$1	373	110	145	12.6048
GUGGGCGGAACCCUCAAGGCUAGGGGGGCCGGCAG	chr6:43596664-43596967(-)$1	303	128	163	14.2722
ACAGCGGGGGUUGUAAAACUUGGGAACCUCAUGUU	chr16:4744414-4744706(+)$1	292	157	192	13.0206
AGUGUAAGCAGCUGAACGAGAACCAAGUGCGGACG	chr8:30669809-30670093(-)$1	284	211	246	12.0155
CAUGGGCCUCCAGCUUCGCGCGCUGUUGGGAGCCU	chr12:132414131-132414397(+)$1	266	135	170	12.6831
UGCAGGGGUUCUGGGAGGAGGGCCAGGGUGCCACA	chr22:50722989-50723254(-)$1	265	89	124	13.9603
GAGCGGGGCGGCUCGGGGAGAAGGGCACGGGACCC	chr19:18548486-18548739(-)$1	253	107	142	13.3955
CGAGCGCGGCGGCCGGGGUGGUAGUGGCAGUGUUC	chr4:39699782-39700060(+)$1	278	15	50	12.3288
CCUUUCUUCCGUAUGCCUCUCAACGGGACGAGCAG	chr17:79223787-79224036(-)$1	249	108	143	11.6979
gccgaggcccgcAAGAAGCCCAGCGAGGAGGAGGC	chr16:88709810-88710133(-)$1	323	265	300	13.5902
CCCUGGAGCCCCACGUGUACGAGUGGACGGCCGGG	chr2:242706966-242707229(+)$1	263	218	253	13.8067
CAAACGGAGUGUGGAAAUACGACCUGACCCGUGAG	chr2:27255805-27256119(+)$1	314	199	234	13.2140
GCCCGCGGGGAUGGAGCGGGAGGCGUUGCCGUGGG	chr16:30537571-30537843(-)$1	272	99	134	13.0887
CCAUUGCCAAUCCUGGGAGUGGGGGAGUGGGAUCG	chr16:4744314-4744569(+)$1	255	163	198	14.5339
ACUCCUGACCUCGUUUCUCACCUGAUCCAGGUAUC	chr19:10479005-10479316(-)$1	311	192	227	11.4984
GUGCCAGGAGCCAGGGAGAGCACUGGCUUCCCACA	chr9:140348891-140349204(-)$1	313	172	207	12.0563
GCCUGUCAGGUCAGUGCGGAGUCUGAGGCCUGGAG	chr1:205718984-205719212(-)$1	228	119	154	12.9385
AGGGGCUGAGGGAGGGUGUGGGCUCCCAGCGGCUU	chr22:22049538-22049799(+)$1	261	96	131	14.8272
ugguggcuacagcggagauagaagugggggcggcu	chr17:34171524-34171888(+)$1	364	80	115	15.4381
ACUGGCAGAGGUCGCCAAGAAGAGCCUGCGCUCCG	chr1:227164964-227165286(+)$1	322	213	248	13.3444
GCUCAGGACGUCCUGGUUGGGGAGGGCAUUCAGAG	chr16:67207687-67207949(+)$1	262	44	79	14.6889
CGUUGGGUGGCCGGAGGAGUGGGGCGGCUCUAGGG	chr4:7012095-7012499(+)$1	404	144	179	13.2550
ugguggcuacagcggagauagaagugggggcggcu	chr17:34171437-34171724(+)$1	287	167	202	15.4381
GGUCUGUGcacacacauacauacgcaugcacaggc	chr21:47613521-47613774(-)$1	253	112	147	14.5286
ACCCCAGGAGCUGCCUCAGAAGCGGGAGCCCUGCC	chr5:176916996-176917264(-)$1	268	186	221	11.9403
UCUGACCUUUCCCGCCCUCUACUCUUGGGAAAGGU	chr16:88922674-88922975(-)$1	301	155	190	12.5220
GUGGUGGGAUGAACUUUGGUGCGUUCAGCAUUAAU	chr1:11082210-11082474(+)$1	264	178	213	14.8779
UCAGUGACAGGGGUGGGGUUGGGCGGGGCAGCUGG	chr8:145693804-145694073(+)$1	269	83	118	13.7966
AGGCCUCGCCGGGUCUUUUUCCGCGCGGCGUGGGG	chr13:115000372-115000688(+)$1	316	266	301	14.0739
CCCGGGAGGCCGAGGGAAGCAAGACAUCGGGGACA	chr6:32157479-32157736(-)$1	257	175	210	10.3766
UGGGUGCUUCAUGGUUUCUCUUCCAGAAAAGCGCA	chr22:20862367-20862698(+)$1	331	25	60	13.5673
GGAGGCGGCGCCGUUAUCAGGUAGGGCGCCCAGGA	chr16:2867255-2867547(+)$1	292	182	217	14.6421
gggggucggggcgagggcggacggugcggaaccgg	chr8:25315615-25315945(-)$1	330	262	297	14.2943
GAGCCGCGGGGGCCGGGGGAGAGGAGGUGGUGAGA	chr6:29600363-29600664(-)$1	301	223	258	12.6944
GUGGUGGGAUGAACUUUGGUGCGUUCAGCAUUAAU	chr1:11082274-11082617(+)$1	343	114	149	14.8779
cggggAGUCGGCGCUGCUGGACGGGUGGCUGCAgc	chr10:101379902-101380220(-)$1	318	196	231	11.9726
gcucaggugggcggggaggggacgggcgggggagg	chr1:984437-984726(+)$1	289	31	66	14.0119
gauggauggguggUAGAUACUGGAGACACUUUCUU	chr21:47731345-47731718(-)$1	373	161	196	13.4790
ggacacugcggccucagccucggccucggcucccg	chr5:137688342-137688617(+)$1	275	195	230	14.0350
CCUUCUAGGGCGGCGGAGGUGAGCGGUCCGGGAGG	chr5:138629685-138630019(+)$1	334	14	49	12.5629
GCGUUAUUAUUUAAUAAAUGUUUUUUAGGUGGUUU	chr4:110745025-110745270(+)$1	245	67	102	14.1478
GGGGGCCGUACCAUUAAGAGGAGGACAGGCUAAGA	chr16:69165206-69165483(-)$1	277	161	196	12.6933
GAGAGGAAGGGCGCUGCCCAAUGUGGCUGUCUGCU	chr1:153604193-153604522(-)$1	329	171	206	15.2607
GGCAUCCGCCUGCUGGAAGGAGGUAGGUGGGUGGG	chr8:145623238-145623504(-)$1	266	79	114	10.5574
GUGGGGUGGGGCAGGAUGCUGGAUGGCCCACUGUU	chr12:49392909-49393185(-)$1	276	100	135	14.0735
GAGAGUCGGGUGCUGGGCAGGGAGGGCACCCUGGC	chr21:46927311-46927578(+)$1	267	82	117	13.7129
GCUGGGCUCGGGACGAGGAGUGAGUGCUGCAGGGC	chr22:20110066-20110310(+)$1	244	135	170	11.6036
GGGAGCCAAGGCACCUCGGGCAGCGCCAACGACUC	chr17:55333991-55334263(+)$1	272	124	159	14.9364
ggcggggcggggcggggccaggcgCACCGCCCUCG	chr19:6739609-6739897(+)$1	288	43	78	16.2391
GGUACGGGAAUUCCAAAUUUGAGGGCCUCCCGGCU	chr16:31044886-31045235(+)$1	349	174	209	14.0529
GAGGCGGCAGCUCUAACAGCAGAGAGCGUCACCGC	chr17:37618165-37618454(+)$1	289	235	270	13.8814
UAUUGCAUUUGCUGAAUGUACAGACGGCAUUUGUA	chr19:36516900-36517174(+)$1	274	15	50	13.8311
AGGCGGCACUGGUGGGGUGGGUGGGGGUGCCGGUU	chr6:33178891-33179177(+)$1	286	238	273	11.8994
AGCCGACGCCGGGUGAGCAUAGACCGGGCUGGUGG	chr9:131102849-131103156(+)$1	307	256	291	14.6992

#DB
...(((((..((.(........).))..)))))..	chr3:45730807-45731097(+)$1	1	199	234	14.1217
.((.((..((.((..........)).))..)))))	chr11:85779666-85779924(-)$1	1	198	233	12.7270
((.(((((((((............))))))))).)	chr11:61196970-61197343(-)$1	1	110	145	12.6048
((.(.(((..((((........))))..))).).)	chr6:43596664-43596967(-)$1	1	128	163	14.2722
)(((((((((((.(........).)))))).))))	chr16:4744414-4744706(+)$1	1	157	192	13.0206
(((((..(((..((.........))..)))..)))	chr8:30669809-30670093(-)$1	1	211	246	12.0155
...((((.((((((..........)))))).))))	chr12:132414131-132414397(+)$1	1	135	170	12.6831
.((.((.(((((((........))))))).))...	chr22:50722989-50723254(-)$1	1	89	124	13.9603
...((((.((((((........)))).))...)))	chr19:18548486-18548739(-)$1	1	107	142	13.3955
(((((((.((.((..........)).)).))))))	chr4:39699782-39700060(+)$1	1	15	50	12.3288
(...((((((((..........)))))).))))))	chr17:79223787-79224036(-)$1	1	108	143	11.6979
(((....(((((..........))).))....)))	chr16:88709810-88710133(-)$1	1	265	300	13.5902
(((..(.(((((((........))))..)))))))	chr2:242706966-242707229(+)$1	1	218	253	13.8067
(..((((.((..((........))..))))))..)	chr2:27255805-27256119(+)$1	1	199	234	13.2140
.(((((((.((((..........)))).)))))))	chr16:30537571-30537843(-)$1	1	99	134	13.0887
((..(.(((.((((........)))).))).)..)	chr16:4744314-4744569(+)$1	1	163	198	14.5339
(..((((...(((.........)))..))))..))	chr19:10479005-10479316(-)$1	1	192	227	11.4984
(((...((((((((........))))))))...))	chr9:140348891-140349204(-)$1	1	172	207	12.0563
((((((((((((((........)))..)))))..)	chr1:205718984-205719212(-)$1	1	119	154	12.9385
((((((((.(((((........)))))..))))))	chr22:22049538-22049799(+)$1	1	96	131	14.8272
((((.(((...((..........))...))).)))	chr17:34171524-34171888(+)$1	1	80	115	15.4381
....((((.(.((........)).)))))))))))	chr1:227164964-227165286(+)$1	1	213	248	13.3444
.(((.(((.(((((........))))).))).)))	chr16:67207687-67207949(+)$1	1	44	79	14.6889
(.((((((.(((..........))).)).)))).)	chr4:7012095-7012499(+)$1	1	144	179	13.2550
((((.(((...((..........))...))).)))	chr17:34171437-34171724(+)$1	1	167	202	15.4381
((((((((((..(..........)..)))))))..	chr21:47613521-47613774(-)$1	1	112	147	14.5286
....((((.(((.((........)).)))))))..	chr5:176916996-176917264(-)$1	1	186	221	11.9403
))))((((((((((...........))))))))))	chr16:88922674-88922975(-)$1	1	155	190	12.5220
.((((((..(((((........)))))...)))..	chr1:11082210-11082474(+)$1	1	178	213	14.8779
(((((..(....((........))...)..)))))	chr8:145693804-145694073(+)$1	1	83	118	13.7966
((.((((((((.((........)).))))).))).	chr13:115000372-115000688(+)$1	1	266	301	14.0739
))))))))))(((.(.........).))).((.((	chr6:32157479-32157736(-)$1	1	175	210	10.3766
)))((((((..(((........)))...)))))).	chr22:20862367-20862698(+)$1	1	25	60	13.5673
(...(.((((((.(........).)))))))....	chr16:2867255-2867547(+)$1	1	182	217	14.6421
((...(((.(.((........)).).)))..))))	chr8:25315615-25315945(-)$1	1	262	297	14.2943
.)))(((.(...((........))...).)))...	chr6:29600363-29600664(-)$1	1	223	258	12.6944
.((((((..(((((........)))))...)))..	chr1:11082274-11082617(+)$1	1	114	149	14.8779
((.(.(((((.(...........).))))).)..)	chr10:101379902-101380220(-)$1	1	196	231	11.9726
.(((...(.(.(.(........).).).)..))).	chr1:984437-984726(+)$1	1	31	66	14.0119
((.(((..((((..............)))))))))	chr21:47731345-47731718(-)$1	1	161	196	13.4790
((...(((.((((........)))).)))...)))	chr5:137688342-137688617(+)$1	1	195	230	14.0350
((((((.((((.((........)).)))).)))))	chr5:138629685-138630019(+)$1	1	14	49	12.5629
.....(((((((((..........)))))))))..	chr4:110745025-110745270(+)$1	1	67	102	14.1478
...((((((.((..........)))).))))....	chr16:69165206-69165483(-)$1	1	161	196	12.6933
(((.(((.((.(((........))).)).))).))	chr1:153604193-153604522(-)$1	1	171	206	15.2607
..((((((((((((.......))))))))))))..	chr8:145623238-145623504(-)$1	1	79	114	10.5574
(.(.((((((.((..........)).)))))).).	chr12:49392909-49393185(-)$1	1	100	135	14.0735
(.((((((((((((..........))))))).)))	chr21:46927311-46927578(+)$1	1	82	117	13.7129
.((.(.(((((.((.........)).)))..)).)	chr22:20110066-20110310(+)$1	1	135	170	11.6036
((((((...(((.(........).)))...).)))	chr17:55333991-55334263(+)$1	1	124	159	14.9364
...(((((((.(((........))).)))))))))	chr19:6739609-6739897(+)$1	1	43	78	16.2391
(((.(((((..(((........)))..))))))))	chr16:31044886-31045235(+)$1	1	174	209	14.0529
(.((.(((.(((((........)))))))).)).)	chr17:37618165-37618454(+)$1	1	235	270	13.8814
(((((((..(((((..........)))))..))))	chr19:36516900-36517174(+)$1	1	15	50	13.8311
((.(((((((...............))))))).))	chr6:33178891-33179177(+)$1	1	238	273	11.8994
((((.(((((.(((........))).)))..)).)	chr9:131102849-131103156(+)$1	1	256	291	14.6992

#PSSM
f : 0.17	e : 0.14	c : 0.08	h : 0.08	" : 0.08	[ : 0.07	d : 0.07	# : 0.05	b : 0.03	: : 0.03	! : 0.03	a : 0.03	= : 0.01	] : 0.01	$ : 0.01	g : 0.01	
e : 0.16	f : 0.16	c : 0.14	" : 0.10	b : 0.07	h : 0.07	[ : 0.07	# : 0.05	! : 0.05	g : 0.03	= : 0.01	i : 0.01	d : 0.01	$ : 0.01	
e : 0.14	" : 0.14	[ : 0.10	f : 0.10	c : 0.10	b : 0.07	h : 0.07	# : 0.05	! : 0.05	g : 0.03	= : 0.03	d : 0.01	i : 0.01	$ : 0.01	a : 0.01	
e : 0.12	c : 0.12	[ : 0.10	d : 0.10	" : 0.08	g : 0.08	f : 0.07	h : 0.05	# : 0.05	i : 0.03	a : 0.03	! : 0.03	= : 0.03	$ : 0.01	b : 0.01	
d : 0.14	[ : 0.12	c : 0.10	e : 0.08	g : 0.08	" : 0.07	f : 0.07	b : 0.05	h : 0.05	a : 0.05	= : 0.05	i : 0.03	# : 0.01	! : 0.01	$ : 0.01	
c : 0.23	d : 0.14	e : 0.08	g : 0.08	b : 0.07	i : 0.05	[ : 0.05	= : 0.05	f : 0.05	! : 0.03	h : 0.03	a : 0.03	" : 0.03	# : 0.01	
c : 0.21	d : 0.12	e : 0.10	f : 0.08	g : 0.08	! : 0.07	i : 0.05	[ : 0.05	= : 0.05	b : 0.05	h : 0.03	" : 0.03	# : 0.01	
c : 0.19	[ : 0.10	g : 0.10	e : 0.08	! : 0.08	f : 0.08	b : 0.07	i : 0.05	= : 0.05	d : 0.05	" : 0.03	a : 0.03	h : 0.01	
[ : 0.17	b : 0.12	f : 0.10	! : 0.08	c : 0.08	g : 0.08	" : 0.07	e : 0.07	i : 0.05	= : 0.03	d : 0.03	h : 0.01	# : 0.01	a : 0.01	
e : 0.16	c : 0.14	b : 0.08	f : 0.08	g : 0.08	! : 0.07	d : 0.07	" : 0.07	i : 0.05	a : 0.05	[ : 0.03	= : 0.03	h : 0.01	# : 0.01	
[ : 0.17	d : 0.14	e : 0.14	c : 0.12	! : 0.08	f : 0.07	" : 0.05	b : 0.03	i : 0.03	g : 0.03	= : 0.03	h : 0.01	# : 0.01	x : 0.01	
c : 0.21	b : 0.16	d : 0.12	e : 0.10	f : 0.07	! : 0.05	[ : 0.05	i : 0.03	g : 0.03	= : 0.03	a : 0.03	h : 0.01	# : 0.01	" : 0.01	x : 0.01	
b : 0.24	c : 0.14	[ : 0.10	d : 0.10	e : 0.10	s : 0.07	g : 0.03	= : 0.03	u : 0.01	f : 0.01	h : 0.01	a : 0.01	t : 0.01	w : 0.01	i : 0.01	x : 0.01	
s : 0.19	b : 0.14	c : 0.10	e : 0.10	a : 0.08	d : 0.07	q : 0.05	g : 0.03	= : 0.03	u : 0.01	f : 0.01	r : 0.01	h : 0.01	[ : 0.01	t : 0.01	w : 0.01	i : 0.01	x : 0.01	
q : 0.53	s : 0.26	r : 0.05	t : 0.03	u : 0.01	b : 0.01	a : 0.01	w : 0.01	p : 0.01	x : 0.01	
q : 0.55	s : 0.26	r : 0.07	t : 0.03	u : 0.01	w : 0.01	p : 0.01	x : 0.01	
q : 0.55	s : 0.26	r : 0.07	t : 0.03	u : 0.01	w : 0.01	p : 0.01	x : 0.01	
q : 0.55	s : 0.26	r : 0.07	t : 0.03	u : 0.01	w : 0.01	p : 0.01	x : 0.01	
q : 0.55	s : 0.26	r : 0.07	t : 0.03	u : 0.01	w : 0.01	p : 0.01	x : 0.01	
q : 0.55	s : 0.26	r : 0.07	t : 0.03	u : 0.01	w : 0.01	p : 0.01	x : 0.01	
q : 0.55	s : 0.26	r : 0.07	t : 0.03	u : 0.01	w : 0.01	p : 0.01	x : 0.01	
q : 0.49	s : 0.26	r : 0.07	b : 0.03	t : 0.03	u : 0.01	w : 0.01	d : 0.01	= : 0.01	x : 0.01	
s : 0.19	c : 0.16	b : 0.14	a : 0.08	d : 0.08	e : 0.08	r : 0.05	t : 0.03	u : 0.01	g : 0.01	f : 0.01	h : 0.01	q : 0.01	w : 0.01	= : 0.01	x : 0.01	
b : 0.24	c : 0.16	] : 0.12	d : 0.10	e : 0.08	s : 0.07	a : 0.03	u : 0.01	g : 0.01	f : 0.01	h : 0.01	t : 0.01	r : 0.01	w : 0.01	= : 0.01	x : 0.01	
b : 0.17	c : 0.17	d : 0.10	e : 0.10	f : 0.07	a : 0.07	] : 0.05	i : 0.03	g : 0.03	2 : 0.03	3 : 0.03	h : 0.01	t : 0.01	w : 0.01	= : 0.01	x : 0.01	
] : 0.24	e : 0.14	d : 0.12	2 : 0.10	3 : 0.08	f : 0.07	g : 0.05	b : 0.03	i : 0.03	= : 0.03	h : 0.01	w : 0.01	c : 0.01	
e : 0.14	2 : 0.12	c : 0.12	b : 0.10	f : 0.08	g : 0.08	3 : 0.08	d : 0.07	] : 0.05	i : 0.03	= : 0.03	h : 0.01	a : 0.01	
c : 0.16	b : 0.12	3 : 0.10	f : 0.08	g : 0.08	d : 0.08	e : 0.08	2 : 0.07	] : 0.05	i : 0.03	= : 0.03	a : 0.03	h : 0.01	
c : 0.24	e : 0.10	g : 0.10	d : 0.10	f : 0.08	] : 0.08	2 : 0.05	3 : 0.05	i : 0.03	= : 0.03	b : 0.01	4 : 0.01	h : 0.01	a : 0.01	
c : 0.17	2 : 0.12	d : 0.10	e : 0.08	f : 0.08	3 : 0.08	g : 0.08	i : 0.05	= : 0.05	] : 0.03	h : 0.03	b : 0.01	4 : 0.01	: : 0.01	
c : 0.17	] : 0.10	2 : 0.10	d : 0.08	g : 0.08	b : 0.07	e : 0.05	i : 0.05	3 : 0.05	= : 0.05	f : 0.05	h : 0.03	a : 0.03	4 : 0.01	
c : 0.12	b : 0.10	] : 0.10	d : 0.08	g : 0.08	e : 0.07	f : 0.07	i : 0.05	3 : 0.05	4 : 0.05	a : 0.05	= : 0.05	2 : 0.03	h : 0.03	
e : 0.14	f : 0.10	c : 0.10	d : 0.08	2 : 0.08	b : 0.07	g : 0.07	i : 0.05	= : 0.05	] : 0.05	3 : 0.03	h : 0.03	4 : 0.03	a : 0.01	[ : 0.01	: : 0.01	
e : 0.16	2 : 0.12	] : 0.10	f : 0.10	c : 0.10	d : 0.08	4 : 0.07	3 : 0.03	h : 0.03	g : 0.03	= : 0.03	b : 0.01	i : 0.01	5 : 0.01	: : 0.01	a : 0.01	
e : 0.17	f : 0.14	c : 0.10	d : 0.08	4 : 0.07	h : 0.05	2 : 0.05	: : 0.05	3 : 0.03	b : 0.03	g : 0.03	= : 0.03	a : 0.03	] : 0.03	i : 0.01	5 : 0.01	

#score	754.3905952886336
#seq	56
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_UTR_m2_run2.txt

#BEAR
"ddddqqqqqqqqdddd44	chrX:53439748-53439984(-)$1	236	118	137	14.3063
"ddddqqqqqqqqdddddd	chr1:150198839-150199106(-)$1	267	149	168	13.8207
c[cccqqqqqqqqccc]cc	chr19:5609944-5610218(-)$1	274	81	100	14.8566
eeeeeqqqqqqqqeeeee:	chr16:89351752-89352003(-)$1	251	29	48	12.7476
eeeeeqqqqqqqqeeeee4	chr14:73576003-73576273(+)$1	270	166	185	13.7175
!!cccqqqqqqqqccc22e	chr3:121412771-121413083(-)$1	312	167	186	14.8641
!!cccqqqqqqqqccc]ee	chr10:70546202-70546421(+)$1	219	6	25	15.1923
%%cccqqqqqqqqccceee	chr3:9488646-9488873(+)$1	227	37	56	13.7325
ddcccqqqqqqqqccc]dd	chr17:27001278-27001559(+)$1	281	177	196	14.3202
[ddddqqqqqqqqdddd]b	chr1:70700285-70700571(+)$1	286	246	265	13.6694
cc[bbqqqqqqqqbb]ccc	chr12:56575137-56575480(-)$1	343	85	104	13.9469
""cccqqqqqqqqccc444	chr1:29475314-29475590(-)$1	276	129	148	15.4730
eeeeeqqqqqqqqeeeeec	chrX:53440081-53440319(-)$1	238	84	103	13.5314
b[cccqqqqqqqqccc]bb	chr1:90478594-90478897(+)$1	303	126	145	14.1244
"ddddqqqqqqqqdddd55	chr3:185649301-185649585(-)$1	284	91	110	12.9043
!!cccqqqqqqqqccc22c	chr17:48821020-48821243(+)$1	223	183	202	14.9230
cc!!aqqqqqqqqa22ccc	chr17:48823898-48824163(+)$1	265	127	146	13.8099
eeeeeqqqqqqqqeeeee2	chr2:203168008-203168267(+)$1	259	93	112	13.5206
eeeeeqqqqqqqqeeeee:	chr10:70545811-70546076(+)$1	265	4	23	12.7476
$$cccqqqqqqqqccc666	chr3:42674145-42674421(+)$1	276	115	134	13.6452
[ddddqqqqqqqqddddcc	chr18:55282772-55283064(-)$1	292	234	253	13.8973
&&cccqqqqqqqqccc666	chr3:121412566-121412863(-)$1	297	162	181	12.7119
eeeeeqqqqqqqqeeeee]	chr10:70545792-70546011(+)$1	219	23	42	13.6107
e[cccaqqqqqqqqa]ccc	chr3:47125161-47125441(-)$1	280	107	126	12.3171
==a[aqqqqqqqqa]a]==	chr6:99849309-99849562(-)$1	253	51	70	14.4085
e!!bbqqqqqqqqbb]eee	chr12:56572126-56572410(-)$1	284	163	182	14.3645
cddddqqqqqqqqdddd33	chr19:55652149-55652398(-)$1	249	104	123	14.0806
!ddddqqqqqqqqdddd22	chr1:24975306-24975556(+)$1	250	173	192	13.8518
bb[bbqqqqqqqqbb]bbf	chr19:10283664-10283952(-)$1	288	60	79	12.7326
###bbqqqqqqqqbb4444	chr2:153528872-153529238(-)$1	366	115	134	14.7920
c"""aqqqqqqqqa333cc	chr15:69072324-69072582(-)$1	258	117	136	14.6361
eecccqqqqqqqqccc]ee	chr9:131456819-131457050(+)$1	231	56	75	14.5788
$$cccqqqqqqqqccc555	chrX:102612452-102612731(+)$1	279	177	196	12.8566
gggggqqqqqqqqgggggg	chr16:249094-249338(-)$1	244	132	151	13.8363
dddddqqqqqqqqdddddd	chrX:53439929-53440189(-)$1	260	100	119	13.4155
b[cccqqqqqqqqccc]bb	chr6:12015709-12016006(+)$1	297	203	222	14.1244
fff[aqqqqqqqqa]ffff	chr1:1636242-1636541(-)$1	299	146	165	13.0430
ggg[aqqqqqqqqa]gggg	chr2:232577051-232577256(+)$1	205	55	74	14.0219
h[cccqqqqqqqqccchhh	chr3:50102363-50102659(+)$1	296	262	281	13.8259
e!!bbqqqqqqqqbb22ee	chr3:9487281-9487507(+)$1	226	149	168	14.1242
gggggqqqqqqqqgggggg	chr12:104325284-104325501(+)$1	217	117	136	13.8363
e!!bbqqqqqqqqbb]eee	chr5:179153580-179153800(+)$1	220	143	162	14.3645
cc!!aqqqqqqqqa22ccc	chr17:48823853-48824079(+)$1	226	172	191	13.8099
gggggqqqqqqqqgggggg	chr11:3026495-3026728(-)$1	233	51	70	13.8363
"ddddqqqqqqqqdddd44	chrX:53439818-53440050(-)$1	232	184	203	14.3063
gggggqqqqqqqqgggggg	chr16:89349350-89349687(-)$1	337	92	111	13.8363
"""bbqqqqqqqqbb]ddd	chr14:102551164-102551383(-)$1	219	148	167	14.3813
"""bbqqqqqqqqbb]ddd	chr14:102551127-102551344(-)$1	217	109	128	14.3813
##cccqqqqqqqqccc===	chr18:19208920-19209202(+)$1	282	101	120	15.0884
""cccqqqqqqqqccceee	chr21:38456381-38456736(+)$1	355	182	201	15.0238
[acccqqqqqqqqccc]a2	chr18:254172-254411(-)$1	239	124	143	14.8697
cc[bbqqqqqqqqbbccc:	chr11:129991494-129991739(+)$1	245	219	238	13.1242
iiiiiqqqqqqqqiiiiii	chr1:24972447-24972663(+)$1	216	102	121	13.9756
"""bbqqqqqqqqbb]ddd	chr14:102551189-102551440(-)$1	251	205	224	14.3813
eeeeeqqqqqqqqeeeee2	chr16:89351871-89352124(-)$1	253	150	169	13.5206
""cccqqqqqqqqccc333	chr15:59185918-59186211(-)$1	293	69	88	15.5952
==a[aqqqqqqqqa]a]==	chr6:99849362-99849606(-)$1	244	95	114	14.4085
bb[bbqqqqqqqqbb]bb3	chr16:2802603-2802865(+)$1	262	224	243	13.1277
cccccqqqqqqqqccc444	chr16:89349128-89349373(-)$1	245	163	182	14.8852
gggggqqqqqqqqgggggg	chr5:70805972-70806245(+)$1	273	99	118	13.8363
d!!bbqqqqqqqqbb22dd	chr3:142761898-142762214(+)$1	316	32	51	13.8760
[ddddqqqqqqqqdddd]e	chr14:73576073-73576300(+)$1	227	125	144	13.8699
eeeeeqqqqqqqqeeeee:	chr15:59186011-59186290(-)$1	279	52	71	12.7476
e!!bbqqqqqqqqbb22ee	chr4:73968003-73968364(-)$1	361	240	259	14.1242
eee[aqqqqqqqqa]eeee	chr19:5622587-5622835(-)$1	248	167	186	13.8815
a[cccqqqqqqqqccc]a]	chr17:16049648-16049963(-)$1	315	277	296	15.0128
&ddddqqqqqqqqdddd33	chr3:121414239-121414533(-)$1	294	49	68	13.6928
eeeeeqqqqqqqqeeeee2	chr15:59205604-59205929(-)$1	325	18	37	13.5206
dddbbqqqqqqqqbb]ddd	chr7:151864169-151864446(-)$1	277	244	263	13.5775

#otherMatches

#Seq PSSM
auugagaaggagaUCAAGU	chrX:53439748-53439984(-)$1	236	118	137	14.3063
AUGAAAGAAGAAAUUCAGG	chr1:150198839-150199106(-)$1	267	149	168	13.8207
GUGAUGCCUAAGAAUCUCC	chr19:5609944-5610218(-)$1	274	81	100	14.8566
GGCCUCAAGCACAAGGCCA	chr16:89351752-89352003(-)$1	251	29	48	12.7476
GCAUCCAGAUCCAGAUGCA	chr14:73576003-73576273(+)$1	270	166	185	13.7175
GCUUUGCGCAGAGAAAAAG	chr3:121412771-121413083(-)$1	312	167	186	14.8641
AUUGCUAUCUUAUGCACAG	chr10:70546202-70546421(+)$1	219	6	25	15.1923
ACUCGUCCUCAUUUGAAGC	chr3:9488646-9488873(+)$1	227	37	56	13.7325
CGCAGUGAGUAGUCUGUCG	chr17:27001278-27001559(+)$1	281	177	196	14.3202
GUUGGUUUGCAUUUCAAGA	chr1:70700285-70700571(+)$1	286	246	265	13.6694
UCUCCAUCCUAUAGGUGAA	chr12:56575137-56575480(-)$1	343	85	104	13.9469
agugugagcaggggcagga	chr1:29475314-29475590(-)$1	276	129	148	15.4730
CGCAAGAAAAAUAUUGCGG	chrX:53440081-53440319(-)$1	238	84	103	13.5314
GGCGAAUUGAGGCUCGGCG	chr1:90478594-90478897(+)$1	303	126	145	14.1244
AGAAUAUUGAGCAAUUUGU	chr3:185649301-185649585(-)$1	284	91	110	12.9043
GUCUGUUAACAGUUAGUAG	chr17:48821020-48821243(+)$1	223	183	202	14.9230
UCGGGACAGAGAACAAGAU	chr17:48823898-48824163(+)$1	265	127	146	13.8099
UUUUCAGAGUCCAGagaaa	chr2:203168008-203168267(+)$1	259	93	112	13.5206
acagucaugugccacugug	chr10:70545811-70546076(+)$1	265	4	23	12.7476
AGGAAGCAAGCAGUUCAGA	chr3:42674145-42674421(+)$1	276	115	134	13.6452
UCAGAUCAUUAUUUCUGUG	chr18:55282772-55283064(-)$1	292	234	253	13.8973
GAUUCAAAGCAAAGAAGAA	chr3:121412566-121412863(-)$1	297	162	181	12.7119
acagucaugugccacugug	chr10:70545792-70546011(+)$1	219	23	42	13.6107
CAUCCCAAGAUGAAGAGGA	chr3:47125161-47125441(-)$1	280	107	126	12.3171
UUCAGAAGAAAAGCAGCAA	chr6:99849309-99849562(-)$1	253	51	70	14.4085
GACUGAACAGACCCACCAC	chr12:56572126-56572410(-)$1	284	163	182	14.3645
GCUUCAGAACUGAGAAGGA	chr19:55652149-55652398(-)$1	249	104	123	14.0806
CUUUCCUAGAACUGAAGAA	chr1:24975306-24975556(+)$1	250	173	192	13.8518
CCUGGCACUCACACUUGGG	chr19:10283664-10283952(-)$1	288	60	79	12.7326
UAAGUGAAAAAAAGCAAGC	chr2:153528872-153529238(-)$1	366	115	134	14.7920
GAAGCGAAAACGAGAACCU	chr15:69072324-69072582(-)$1	258	117	136	14.6361
CUCAGCAUUAAUCCUGAAG	chr9:131456819-131457050(+)$1	231	56	75	14.5788
AAUGGAAGGAAAACCAGAA	chrX:102612452-102612731(+)$1	279	177	196	12.8566
GUUUUCAGCAGCAAAAGCU	chr16:249094-249338(-)$1	244	132	151	13.8363
GGCUGACCGGUACCAGCGC	chrX:53439929-53440189(-)$1	260	100	119	13.4155
CAUUAAGUAGAAGUAAGGC	chr6:12015709-12016006(+)$1	297	203	222	14.1244
GGGAGAUCAACACCAUCCU	chr1:1636242-1636541(-)$1	299	146	165	13.0430
ACAGUAGGAGGGAAGUGUG	chr2:232577051-232577256(+)$1	205	55	74	14.0219
GCGCAAAGGCUGAUGCCUU	chr3:50102363-50102659(+)$1	296	262	281	13.8259
ACUGUCUGACAUUACUUUG	chr3:9487281-9487507(+)$1	226	149	168	14.1242
GUUUGUGUUCAUUUGAACU	chr12:104325284-104325501(+)$1	217	117	136	13.8363
CAGUCAAGAGGAGGAAGAC	chr5:179153580-179153800(+)$1	220	143	162	14.3645
UCGGGACAGAGAACAAGAU	chr17:48823853-48824079(+)$1	226	172	191	13.8099
AGUUUAUUUUGCAGGACUG	chr11:3026495-3026728(-)$1	233	51	70	13.8363
auugagaaggagaUCAAGU	chrX:53439818-53440050(-)$1	232	184	203	14.3063
UUCACAGAUGAGAGUGAGG	chr16:89349350-89349687(-)$1	337	92	111	13.8363
AACCUGAAAUUGAAGAUGU	chr14:102551164-102551383(-)$1	219	148	167	14.3813
AACCUGAAAUUGAAGAUGU	chr14:102551127-102551344(-)$1	217	109	128	14.3813
GUUGCaggaagaggcagag	chr18:19208920-19209202(+)$1	282	101	120	15.0884
aaccaggagaagauggucu	chr21:38456381-38456736(+)$1	355	182	201	15.0238
ACCCUGGGUCAGAAGGUGA	chr18:254172-254411(-)$1	239	124	143	14.8697
UCUACUUUGAACUGUGAAG	chr11:129991494-129991739(+)$1	245	219	238	13.1242
UGCCUAGAAAAAAAGGUAU	chr1:24972447-24972663(+)$1	216	102	121	13.9756
AACCUGAAAUUGAAGAUGU	chr14:102551189-102551440(-)$1	251	205	224	14.3813
GGCCUCAAGCACAAGGCCA	chr16:89351871-89352124(-)$1	253	150	169	13.5206
AAUCUGAAAAAAAAGAAAG	chr15:59185918-59186211(-)$1	293	69	88	15.5952
UUCAGAAGAAAAGCAGCAA	chr6:99849362-99849606(-)$1	244	95	114	14.4085
GCGGCGGGCGGAGGCGGCG	chr16:2802603-2802865(+)$1	262	224	243	13.1277
CUGCCGAAGACAAGGCUAA	chr16:89349128-89349373(-)$1	245	163	182	14.8852
AGAGGAGGUCAAGCCUCUA	chr5:70805972-70806245(+)$1	273	99	118	13.8363
AUACAAUGUAUUCUGCUUG	chr3:142761898-142762214(+)$1	316	32	51	13.8760
GGGUAAGAUACUGUACCAU	chr14:73576073-73576300(+)$1	227	125	144	13.8699
GGUACAUUAUGAAGUACUC	chr15:59186011-59186290(-)$1	279	52	71	12.7476
UGCUCAAGAAAAAGAAAAG	chr4:73968003-73968364(-)$1	361	240	259	14.1242
CGGGCGUUGCGGAGACUGG	chr19:5622587-5622835(-)$1	248	167	186	13.8815
AGUAGUUUGAUGUUUAAUG	chr17:16049648-16049963(-)$1	315	277	296	15.0128
AUGUUAGUAAUGAAGCAGA	chr3:121414239-121414533(-)$1	294	49	68	13.6928
UUCUUACCAUUAAAAGGAC	chr15:59205604-59205929(-)$1	325	18	37	13.5206
UACCAACAAUUAAUGAGUA	chr7:151864169-151864446(-)$1	277	244	263	13.5775

#DB
.((((........))))..	chrX:53439748-53439984(-)$1	1	118	137	14.3063
.((((........))))))	chr1:150198839-150199106(-)$1	1	149	168	13.8207
(.(((........))).))	chr19:5609944-5610218(-)$1	1	81	100	14.8566
(((((........))))).	chr16:89351752-89352003(-)$1	1	29	48	12.7476
(((((........))))).	chr14:73576003-73576273(+)$1	1	166	185	13.7175
..(((........)))..)	chr3:121412771-121413083(-)$1	1	167	186	14.8641
..(((........))).))	chr10:70546202-70546421(+)$1	1	6	25	15.1923
..(((........))))))	chr3:9488646-9488873(+)$1	1	37	56	13.7325
(((((........))).))	chr17:27001278-27001559(+)$1	1	177	196	14.3202
.((((........)))).)	chr1:70700285-70700571(+)$1	1	246	265	13.6694
((.((........)).)))	chr12:56575137-56575480(-)$1	1	85	104	13.9469
..(((........)))...	chr1:29475314-29475590(-)$1	1	129	148	15.4730
(((((........)))))(	chrX:53440081-53440319(-)$1	1	84	103	13.5314
(.(((........))).))	chr1:90478594-90478897(+)$1	1	126	145	14.1244
.((((........))))..	chr3:185649301-185649585(-)$1	1	91	110	12.9043
..(((........)))..)	chr17:48821020-48821243(+)$1	1	183	202	14.9230
((..(........)..)))	chr17:48823898-48824163(+)$1	1	127	146	13.8099
(((((........))))).	chr2:203168008-203168267(+)$1	1	93	112	13.5206
(((((........))))).	chr10:70545811-70546076(+)$1	1	4	23	12.7476
..(((........)))...	chr3:42674145-42674421(+)$1	1	115	134	13.6452
.((((........))))))	chr18:55282772-55283064(-)$1	1	234	253	13.8973
..(((........)))...	chr3:121412566-121412863(-)$1	1	162	181	12.7119
(((((........))))).	chr10:70545792-70546011(+)$1	1	23	42	13.6107
(.((((........).)))	chr3:47125161-47125441(-)$1	1	107	126	12.3171
(((.(........).).))	chr6:99849309-99849562(-)$1	1	51	70	14.4085
(..((........)).)))	chr12:56572126-56572410(-)$1	1	163	182	14.3645
(((((........))))..	chr19:55652149-55652398(-)$1	1	104	123	14.0806
.((((........))))..	chr1:24975306-24975556(+)$1	1	173	192	13.8518
((.((........)).))(	chr19:10283664-10283952(-)$1	1	60	79	12.7326
...((........))....	chr2:153528872-153529238(-)$1	1	115	134	14.7920
(...(........)...))	chr15:69072324-69072582(-)$1	1	117	136	14.6361
(((((........))).))	chr9:131456819-131457050(+)$1	1	56	75	14.5788
..(((........)))...	chrX:102612452-102612731(+)$1	1	177	196	12.8566
(((((........))))))	chr16:249094-249338(-)$1	1	132	151	13.8363
)((((........))))((	chrX:53439929-53440189(-)$1	1	100	119	13.4155
(.(((........))).))	chr6:12015709-12016006(+)$1	1	203	222	14.1244
(((.(........).))))	chr1:1636242-1636541(-)$1	1	146	165	13.0430
(((.(........).))))	chr2:232577051-232577256(+)$1	1	55	74	14.0219
(.(((........))))))	chr3:50102363-50102659(+)$1	1	262	281	13.8259
(..((........))..))	chr3:9487281-9487507(+)$1	1	149	168	14.1242
(((((........))))))	chr12:104325284-104325501(+)$1	1	117	136	13.8363
(..((........)).)))	chr5:179153580-179153800(+)$1	1	143	162	14.3645
((..(........)..)))	chr17:48823853-48824079(+)$1	1	172	191	13.8099
(((((........))))))	chr11:3026495-3026728(-)$1	1	51	70	13.8363
.((((........))))..	chrX:53439818-53440050(-)$1	1	184	203	14.3063
(((((........))))))	chr16:89349350-89349687(-)$1	1	92	111	13.8363
...((........)).)))	chr14:102551164-102551383(-)$1	1	148	167	14.3813
...((........)).)))	chr14:102551127-102551344(-)$1	1	109	128	14.3813
..(((........))))))	chr18:19208920-19209202(+)$1	1	101	120	15.0884
..(((........))))))	chr21:38456381-38456736(+)$1	1	182	201	15.0238
.((((........))).).	chr18:254172-254411(-)$1	1	124	143	14.8697
((.((........))))).	chr11:129991494-129991739(+)$1	1	219	238	13.1242
(((((........))))))	chr1:24972447-24972663(+)$1	1	102	121	13.9756
...((........)).)))	chr14:102551189-102551440(-)$1	1	205	224	14.3813
(((((........))))).	chr16:89351871-89352124(-)$1	1	150	169	13.5206
..(((........)))...	chr15:59185918-59186211(-)$1	1	69	88	15.5952
(((.(........).).))	chr6:99849362-99849606(-)$1	1	95	114	14.4085
((.((........)).)).	chr16:2802603-2802865(+)$1	1	224	243	13.1277
(((((........)))...	chr16:89349128-89349373(-)$1	1	163	182	14.8852
(((((........))))))	chr5:70805972-70806245(+)$1	1	99	118	13.8363
(..((........))..))	chr3:142761898-142762214(+)$1	1	32	51	13.8760
.((((........)))).)	chr14:73576073-73576300(+)$1	1	125	144	13.8699
(((((........))))).	chr15:59186011-59186290(-)$1	1	52	71	12.7476
(..((........))..))	chr4:73968003-73968364(-)$1	1	240	259	14.1242
(((.(........).))))	chr19:5622587-5622835(-)$1	1	167	186	13.8815
(.(((........))).).	chr17:16049648-16049963(-)$1	1	277	296	15.0128
.((((........))))..	chr3:121414239-121414533(-)$1	1	49	68	13.6928
(((((........))))).	chr15:59205604-59205929(-)$1	1	18	37	13.5206
(((((........)).)))	chr7:151864169-151864446(-)$1	1	244	263	13.5775

#PSSM
e : 0.23	" : 0.14	c : 0.11	g : 0.08	! : 0.05	d : 0.05	[ : 0.05	b : 0.05	$ : 0.02	& : 0.02	= : 0.02	# : 0.02	% : 0.01	f : 0.01	h : 0.01	i : 0.01	a : 0.01	
d : 0.18	e : 0.15	! : 0.11	" : 0.10	[ : 0.08	g : 0.08	c : 0.07	$ : 0.02	= : 0.02	b : 0.02	# : 0.02	% : 0.01	& : 0.01	f : 0.01	a : 0.01	i : 0.01	
c : 0.30	d : 0.17	e : 0.14	! : 0.10	g : 0.08	[ : 0.05	" : 0.05	a : 0.02	# : 0.01	f : 0.01	i : 0.01	
c : 0.30	b : 0.20	d : 0.15	e : 0.13	[ : 0.07	g : 0.07	! : 0.02	" : 0.01	i : 0.01	
c : 0.30	b : 0.20	d : 0.15	e : 0.13	a : 0.11	g : 0.07	i : 0.01	
q : 0.98	a : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.28	b : 0.20	d : 0.15	e : 0.13	a : 0.11	g : 0.07	q : 0.01	i : 0.01	
c : 0.28	b : 0.20	d : 0.15	e : 0.13	] : 0.07	g : 0.07	2 : 0.02	a : 0.01	3 : 0.01	i : 0.01	
c : 0.30	d : 0.15	e : 0.14	] : 0.14	g : 0.08	2 : 0.07	a : 0.02	4 : 0.01	3 : 0.01	f : 0.01	i : 0.01	
d : 0.21	e : 0.20	] : 0.14	g : 0.08	2 : 0.07	c : 0.07	4 : 0.04	6 : 0.02	b : 0.02	3 : 0.02	5 : 0.01	f : 0.01	h : 0.01	= : 0.01	i : 0.01	
e : 0.26	d : 0.11	c : 0.11	g : 0.08	4 : 0.07	b : 0.05	2 : 0.04	= : 0.04	3 : 0.04	] : 0.02	5 : 0.02	6 : 0.02	a : 0.02	f : 0.01	h : 0.01	i : 0.01	
e : 0.15	c : 0.13	d : 0.11	4 : 0.08	g : 0.08	2 : 0.07	: : 0.05	3 : 0.05	b : 0.04	= : 0.04	5 : 0.02	6 : 0.02	] : 0.02	f : 0.02	h : 0.01	i : 0.01	

#score	963.9784050255137
#seq	69
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_CDS_m2_run1.txt

#BEAR
ffffffddddyyyyyyyyyyyyyyyydddd	chrX:140995011-140995284(+)$1	273	78	108	21.0173
ffffzzzzzzzzzzzzzzzzzffffff>>>	chr13:39587112-39587378(-)$1	266	119	149	13.3592
ffff####cccvvvvvvvvvvvvvccc]ff	chr19:45911819-45912145(-)$1	326	34	64	23.1765
cc^^^^^^^^^^^^^^^^^^^^^^cccddd	chr17:26937612-26937937(-)$1	325	231	261	21.3830
^^^^^^^^^^^^^^^^^^^^^^^^^fffff	chr7:128457626-128457998(+)$1	372	86	116	21.0322
####bb[ddddwwwwwwwwwwwwwwddddb	chr15:49517299-49517556(+)$1	257	74	104	21.6344
fffff!!ddddzzzzzzzzzzzzzzzzzdd	chr7:107564283-107564619(+)$1	336	61	91	16.1694
odddd:ffffffuuuuuuuuuuuuffffff	chr12:57114364-57114623(-)$1	259	197	227	19.0915
nnbb::eeeeevvvvvvvvvvvvveeeee:	chr11:124056516-124056787(+)$1	271	93	123	17.4353
cc^^^^^^^^^^^^^^^^^^^^^^cccddd	chr17:26937529-26937805(-)$1	276	99	129	21.3830
cccc####dddduuuuuuuuuuuudddd66	chr13:39587725-39588008(-)$1	283	244	274	21.6127
:eeeee^^^^^^^^^^^^^^^^^^eeeee:	chr14:104151845-104152128(+)$1	283	182	212	17.8172
++++ggggggguuuuuuuuuuuuggggggg	chr1:180042785-180043100(+)$1	315	224	254	18.3303
ffff####cccvvvvvvvvvvvvvccc]ff	chr19:45912059-45912320(-)$1	261	209	239	23.1765
odddd:ffffffuuuuuuuuuuuuffffff	chr12:57114258-57114491(-)$1	233	65	95	19.0915
iiiiiiiddddyyyyyyyyyyyyyyyyddd	chrX:140994900-140995171(+)$1	271	188	218	20.8634
c!!hhhhhhhhwwwwwwwwwwwwwwhhhhh	chr3:184034315-184034616(+)$1	301	141	171	17.5914
dddd####cccvvvvvvvvvvvvvccc444	chrX:140994804-140995064(+)$1	260	107	137	22.6801

#otherMatches

#Seq PSSM
UCCUCCACUCCAUCCAGUCUUCCCCAGAGU	chrX:140995011-140995284(+)$1	273	78	108	21.0173
UGGCAACCCAUCUCUUAAUCCGUCAGUAUC	chr13:39587112-39587378(-)$1	266	119	149	13.3592
CCCCUUUUGCCUCUUUCUCUUUUUGGUCGG	chr19:45911819-45912145(-)$1	326	34	64	23.1765
GAACCCCCUCCAUCGUCUACGUUAUCUGCA	chr17:26937612-26937937(-)$1	325	231	261	21.3830
CUUUGUUUUCUCAUCUUCAUUAUCUGUUGG	chr7:128457626-128457998(+)$1	372	86	116	21.0322
cacugauccugucuuuuucuuuaauuaggu	chr15:49517299-49517556(+)$1	257	74	104	21.6344
AAAUGUAGUUGUUUUACCUUGUUCACCUCA	chr7:107564283-107564619(+)$1	336	61	91	16.1694
CACCCCCCCAGAUUUUCCCAUUUCUCUGGG	chr12:57114364-57114623(-)$1	259	197	227	19.0915
CUGCUAAUUCUUUUAUCCUACACUAGAAUC	chr11:124056516-124056787(+)$1	271	93	123	17.4353
GAACCCCCUCCAUCGUCUACGUUAUCUGCA	chr17:26937529-26937805(-)$1	276	99	129	21.3830
CGUCUCCCGUGGCUAACUCAACUUCCACUC	chr13:39587725-39588008(-)$1	283	244	274	21.6127
CGCAGCUUCCCUUCUCUCUCCAGUGCUGCC	chr14:104151845-104152128(+)$1	283	182	212	17.8172
AAUUCCAGCUGUAUAUCUACAACCAGUUGG	chr1:180042785-180043100(+)$1	315	224	254	18.3303
CCCCUUUUGCCUCUUUCUCUUUUUGGUCGG	chr19:45912059-45912320(-)$1	261	209	239	23.1765
CACCCCCCCAGAUUUUCCCAUUUCUCUGGG	chr12:57114258-57114491(-)$1	233	65	95	19.0915
CUCCUCCACUCCAUCCAGUCUUCCCCAGAG	chrX:140994900-140995171(+)$1	271	188	218	20.8634
CCUUGGGGGUAAUUCUCUUCUUUCCUAUCC	chr3:184034315-184034616(+)$1	301	141	171	17.5914
CCUGUCUCCUCACUACUUUCCUCAGAGCCC	chrX:140994804-140995064(+)$1	260	107	137	22.6801

#DB
))))))((((................))))	chrX:140995011-140995284(+)$1	1	78	108	21.0173
((((.................))))))...	chr13:39587112-39587378(-)$1	1	119	149	13.3592
((((....(((.............))).))	chr19:45911819-45912145(-)$1	1	34	64	23.1765
((......................))))))	chr17:26937612-26937937(-)$1	1	231	261	21.3830
.........................)))))	chr7:128457626-128457998(+)$1	1	86	116	21.0322
....((.((((..............)))))	chr15:49517299-49517556(+)$1	1	74	104	21.6344
(((((..((((.................))	chr7:107564283-107564619(+)$1	1	61	91	16.1694
.)))).((((((............))))))	chr12:57114364-57114623(-)$1	1	197	227	19.0915
..))..(((((.............))))).	chr11:124056516-124056787(+)$1	1	93	123	17.4353
((......................))))))	chr17:26937529-26937805(-)$1	1	99	129	21.3830
)(((....((((............))))..	chr13:39587725-39588008(-)$1	1	244	274	21.6127
.(((((..................))))).	chr14:104151845-104152128(+)$1	1	182	212	17.8172
....(((((((............)))))))	chr1:180042785-180043100(+)$1	1	224	254	18.3303
((((....(((.............))).))	chr19:45912059-45912320(-)$1	1	209	239	23.1765
.)))).((((((............))))))	chr12:57114258-57114491(-)$1	1	65	95	19.0915
)))))))((((................)))	chrX:140994900-140995171(+)$1	1	188	218	20.8634
(..((((((((..............)))))	chr3:184034315-184034616(+)$1	1	141	171	17.5914
((((....(((.............)))...	chrX:140994804-140995064(+)$1	1	107	137	22.6801

#PSSM
f : 0.27	c : 0.22	o : 0.11	^ : 0.05	# : 0.05	n : 0.05	: : 0.05	+ : 0.05	i : 0.05	d : 0.05	
f : 0.27	c : 0.16	d : 0.16	^ : 0.05	# : 0.05	n : 0.05	e : 0.05	+ : 0.05	i : 0.05	! : 0.05	
f : 0.27	^ : 0.16	d : 0.16	# : 0.05	b : 0.05	c : 0.05	e : 0.05	+ : 0.05	i : 0.05	! : 0.05	
f : 0.27	^ : 0.16	d : 0.16	# : 0.05	b : 0.05	c : 0.05	e : 0.05	+ : 0.05	i : 0.05	h : 0.05	
# : 0.22	^ : 0.16	f : 0.11	d : 0.11	z : 0.05	b : 0.05	: : 0.05	e : 0.05	g : 0.05	i : 0.05	h : 0.05	
# : 0.22	^ : 0.16	: : 0.16	f : 0.05	z : 0.05	b : 0.05	! : 0.05	e : 0.05	g : 0.05	i : 0.05	h : 0.05	
# : 0.22	^ : 0.22	f : 0.11	d : 0.05	z : 0.05	[ : 0.05	! : 0.05	e : 0.05	g : 0.05	i : 0.05	h : 0.05	
d : 0.22	# : 0.22	^ : 0.22	f : 0.11	z : 0.05	e : 0.05	g : 0.05	h : 0.05	
d : 0.27	^ : 0.22	c : 0.16	f : 0.11	z : 0.05	e : 0.05	g : 0.05	h : 0.05	
d : 0.27	^ : 0.22	c : 0.16	f : 0.11	z : 0.05	e : 0.05	g : 0.05	h : 0.05	
^ : 0.22	d : 0.22	c : 0.16	f : 0.11	y : 0.05	z : 0.05	e : 0.05	g : 0.05	h : 0.05	
v : 0.22	^ : 0.22	y : 0.11	z : 0.11	w : 0.11	f : 0.11	d : 0.05	u : 0.05	
v : 0.22	^ : 0.22	u : 0.22	y : 0.11	z : 0.11	w : 0.11	
v : 0.22	^ : 0.22	u : 0.22	y : 0.11	z : 0.11	w : 0.11	
v : 0.22	^ : 0.22	u : 0.22	y : 0.11	z : 0.11	w : 0.11	
v : 0.22	^ : 0.22	u : 0.22	y : 0.11	z : 0.11	w : 0.11	
v : 0.22	^ : 0.22	u : 0.22	y : 0.11	z : 0.11	w : 0.11	
v : 0.22	^ : 0.22	u : 0.22	y : 0.11	z : 0.11	w : 0.11	
v : 0.22	^ : 0.22	u : 0.22	y : 0.11	z : 0.11	w : 0.11	
v : 0.22	^ : 0.22	u : 0.22	y : 0.11	z : 0.11	w : 0.11	
v : 0.22	^ : 0.22	u : 0.22	y : 0.11	z : 0.11	w : 0.11	
v : 0.22	^ : 0.22	u : 0.22	y : 0.11	w : 0.11	f : 0.05	z : 0.05	
v : 0.22	^ : 0.22	u : 0.22	y : 0.11	w : 0.11	f : 0.05	z : 0.05	
v : 0.22	^ : 0.22	u : 0.16	y : 0.11	w : 0.11	f : 0.05	z : 0.05	g : 0.05	
c : 0.27	f : 0.16	y : 0.11	w : 0.11	e : 0.11	^ : 0.05	z : 0.05	d : 0.05	g : 0.05	
c : 0.27	f : 0.22	y : 0.11	d : 0.11	e : 0.11	z : 0.05	g : 0.05	h : 0.05	
c : 0.27	f : 0.22	d : 0.16	e : 0.11	z : 0.05	g : 0.05	y : 0.05	h : 0.05	
d : 0.33	f : 0.16	] : 0.11	e : 0.11	> : 0.05	z : 0.05	g : 0.05	h : 0.05	4 : 0.05	
d : 0.33	f : 0.27	e : 0.11	> : 0.05	6 : 0.05	g : 0.05	h : 0.05	4 : 0.05	
d : 0.27	f : 0.27	: : 0.11	> : 0.05	b : 0.05	6 : 0.05	g : 0.05	h : 0.05	4 : 0.05	

#score	356.84584806244453
#seq	18
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565RQI_SSB_CDS_m3_run2.txt

#BEAR
eeeee[ccc"""dddd[cccmmmmccc]dddd]ccc]eee	chr13:114018197-114018435(-)$1	238	149	189	22.6586
dd[bb[ccc!!dddd!!ccccccnnnnnccc22ccc22dd	chr17:73559158-73559395(+)$1	237	76	116	21.9798
2ccc:dddd"""dddd[ccc[ccc!!a[dddd[ccc!!ff	chr5:149755370-149755584(+)$1	214	46	86	21.2689

#otherMatches

#Seq PSSM
gggcccgcgACCCCCCAGAGGAAACUUCGGGGACGCCGGC	chr13:114018197-114018435(-)$1	238	149	189	22.6586
GCUCUACCACUUCCUCAGCAGCCAGGUAGGCAGUGCCCAG	chr17:73559158-73559395(+)$1	237	76	116	21.9798
AGUCAUCGGACAGUGCGGACAGUGAGGAGGCACCAGCAGC	chr5:149755370-149755584(+)$1	214	46	86	21.2689

#DB
(((((.(((...((((.(((....))).)))).))).)))	chr13:114018197-114018435(-)$1	1	149	189	22.6586
((.((.(((..((((..((((((.....)))..)))..))	chr17:73559158-73559395(+)$1	1	76	116	21.9798
.))).((((...((((.(((.(((..(.((((.(((..((	chr5:149755370-149755584(+)$1	1	46	86	21.2689

#PSSM
e : 0.33	d : 0.33	2 : 0.33	
e : 0.33	d : 0.33	c : 0.33	
e : 0.33	[ : 0.33	c : 0.33	
e : 0.33	b : 0.33	c : 0.33	
e : 0.33	b : 0.33	: : 0.33	
[ : 0.66	d : 0.33	
c : 0.66	d : 0.33	
c : 0.66	d : 0.33	
c : 0.66	d : 0.33	
" : 0.66	! : 0.33	
" : 0.66	! : 0.33	
" : 0.66	d : 0.33	
d : 1.00	
d : 1.00	
d : 1.00	
d : 0.66	! : 0.33	
[ : 0.66	! : 0.33	
c : 1.00	
c : 1.00	
c : 1.00	
m : 0.33	c : 0.33	[ : 0.33	
c : 0.66	m : 0.33	
c : 0.66	m : 0.33	
m : 0.33	n : 0.33	c : 0.33	
c : 0.33	n : 0.33	! : 0.33	
c : 0.33	n : 0.33	! : 0.33	
c : 0.33	n : 0.33	a : 0.33	
] : 0.33	n : 0.33	[ : 0.33	
d : 0.66	c : 0.33	
d : 0.66	c : 0.33	
d : 0.66	c : 0.33	
d : 0.66	2 : 0.33	
] : 0.33	2 : 0.33	[ : 0.33	
c : 1.00	
c : 1.00	
c : 1.00	
] : 0.33	2 : 0.33	! : 0.33	
e : 0.33	2 : 0.33	! : 0.33	
e : 0.33	d : 0.33	f : 0.33	
e : 0.33	d : 0.33	f : 0.33	

#score	65.9073931790333
#seq	3
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF391KVJ_UCHL5_UTR_m3_run2.txt

#BEAR
e[a[ccctttttttttttccc]ae	chr13:99030017-99030275(+)$1	258	184	208	23.0846
[eeeeeuuuuuuuuuuuueeeee]	chr17:73664508-73664807(+)$1	299	236	260	23.4061
!!bbbbwwwwwwwwwwwwwwbb]b	chr16:89347810-89348084(-)$1	274	122	146	20.6928
""cccvvvvvvvvvvvvvcccfff	chr17:38187313-38187582(-)$1	269	209	233	22.9201
gggggguuuuuuuuuuuugggggg	chr6:32945166-32945430(+)$1	264	156	180	24.2212
dd!!bbvvvvvvvvvvvvvbb22d	chr6:155578818-155579074(-)$1	256	76	100	22.0036
:fffffftttttttttttffffff	chr15:44085120-44085347(+)$1	227	103	127	21.3337
###ccctttttttttttccc333i	chr3:50098487-50098754(+)$1	267	81	105	23.1487
$cccwwwwwwwwwwwwwwcccfff	chr19:1422244-1422508(+)$1	264	83	107	21.2097
#eeeeevvvvvvvvvvvvveeeee	chr9:117062299-117062503(+)$1	204	167	191	22.6760
"""cccvvvvvvvvvvvvvccc44	chr3:49052280-49052547(+)$1	267	219	243	23.4640
ggg!!attttttttttta22gggg	chr8:17613226-17613537(-)$1	311	236	260	22.8318
======vvvvvvvvvvvvv=====	chr5:118814434-118814752(+)$1	318	44	68	23.7801
ffffffyyyyyyyyyyyyyyyyff	chr3:132338211-132338490(-)$1	279	193	217	21.2601
======wwwwwwwwwwwwww====	chr1:46079677-46079940(+)$1	263	91	115	22.5744
%eeeeettttttttttteeeee44	chr12:26875295-26875533(-)$1	238	69	93	21.3386
!!ddddvvvvvvvvvvvvvdddd2	chr17:38185904-38186155(-)$1	251	136	160	22.4785
"""cccuuuuuuuuuuuuccc22f	chr2:61406188-61406406(+)$1	218	156	180	24.0232
f!!cccvvvvvvvvvvvvvccc22	chr3:38167551-38167847(-)$1	296	203	227	23.3040
ddd[bbuuuuuuuuuuuubb]ddd	chr15:63352965-63353251(+)$1	286	66	90	22.4759
gggggguuuuuuuuuuuugggggg	chr1:35641917-35642176(-)$1	259	57	81	24.2212
fffffbbtttttttttttbb22ff	chr16:22326359-22326589(+)$1	230	110	134	22.0359
ffffffyyyyyyyyyyyyyyyyff	chr15:90347715-90347961(-)$1	246	87	111	21.2601
::eeeeettttttttttteeeee:	chr4:666149-666399(-)$1	250	107	131	19.3368
ffffffwwwwwwwwwwwwwwffff	chr16:72127761-72128017(+)$1	256	15	39	21.5527
b!!ccctttttttttttccc22bb	chr7:73010397-73010633(-)$1	236	172	196	22.0225
e!!ddddtttttttttttddddee	chr16:24805866-24806141(+)$1	275	91	115	22.2357
[ddddbbtttttttttttbb]ddd	chr11:129992154-129992376(+)$1	222	132	156	21.8518
gggggguuuuuuuuuuuugggggg	chr16:88724165-88724408(-)$1	243	156	180	24.2212
eeeeeyyyyyyyyyyyyyyyyeee	chr14:73577561-73577869(+)$1	308	114	138	21.1266
e[dddduuuuuuuuuuuudddd]e	chr7:99936294-99936606(+)$1	312	281	305	23.0870
ee[cccvvvvvvvvvvvvvccc33	chr9:139743581-139743804(+)$1	223	51	75	23.4879
gggggguuuuuuuuuuuugggggg	chr19:15784237-15784507(+)$1	270	177	201	24.2212
[fffffftttttttttttffffff	chr9:140347371-140347582(-)$1	211	115	139	22.4127
cc[cccuuuuuuuuuuuuccc]cc	chr6:131958273-131958515(+)$1	242	95	119	24.0486
!eeeeettttttttttteeeee]g	chr15:75194807-75195184(-)$1	377	115	139	22.2831
ggggggvvvvvvvvvvvvvggggg	chrX:70510378-70510591(+)$1	213	133	157	23.6481
dddd!!attttttttttta22ddd	chr2:74749716-74749993(-)$1	277	106	130	22.1091
cceeeeettttttttttteeeee]	chr22:44328670-44328963(+)$1	293	64	88	22.3440
:eeeeeuuuuuuuuuuuueeeee:	chr1:95368858-95369172(-)$1	314	166	190	21.2624
gggggguuuuuuuuuuuugggggg	chr9:134334535-134334808(+)$1	273	10	34	24.2212
f"""bbvvvvvvvvvvvvvbb333	chr2:242206172-242206421(-)$1	249	193	217	22.6809
ffffffuuuuuuuuuuuuffffff	chrX:102933376-102933674(-)$1	298	93	117	23.1498
ffffffyyyyyyyyyyyyyyyyff	chr10:45465512-45465773(+)$1	261	225	249	21.2601
d[dddduuuuuuuuuuuudddddd	chr9:71766490-71766740(+)$1	250	90	114	22.6700
=====bbtttttttttttbb]===	chr2:131883222-131883491(+)$1	269	98	122	23.0470
bb[ddddtttttttttttdddd]b	chr17:46052470-46052788(+)$1	318	130	154	21.6075
iiiiiiuuuuuuuuuuuuiiiiii	chr1:11896990-11897305(+)$1	315	16	40	24.1083
!cccwwwwwwwwwwwwwwccc]gg	chr14:24607210-24607418(+)$1	208	174	198	21.7103
gggggguuuuuuuuuuuugggggg	chr12:56568334-56568651(-)$1	317	173	197	24.2212
gggggguuuuuuuuuuuugggggg	chr2:27820889-27821216(+)$1	327	151	175	24.2212
c[ddddvvvvvvvvvvvvvdddd]	chr19:10792558-10792810(+)$1	252	216	240	22.5312
gggggguuuuuuuuuuuugggggg	chr11:129992176-129992401(+)$1	225	108	132	24.2212
hhhhhbbtttttttttttbb]hhh	chr14:35078747-35079049(-)$1	302	171	195	21.1033
dd[a[bbtttttttttttbb]a]d	chr6:56963756-56964037(+)$1	281	117	141	22.2412
ddyyyyyyyyyyyyyyyydddd33	chr14:73577669-73577961(+)$1	292	66	90	19.9478
c!!cccyyyyyyyyyyyyyyyycc	chr9:117054288-117054532(+)$1	244	67	91	21.8623
ffffffuuuuuuuuuuuuffffff	chr3:196666113-196666336(-)$1	223	141	165	23.1498
gggggguuuuuuuuuuuugggggg	chr9:117002401-117002647(+)$1	246	193	217	24.2212

#otherMatches

#Seq PSSM
AUGUUCAAAAUAACACAGUGAUCU	chr13:99030017-99030275(+)$1	258	184	208	23.0846
AUUUCAUUUGUCAGAUUUUGGAAC	chr17:73664508-73664807(+)$1	299	236	260	23.4061
CCGCGGAAAAUAAGCUACACCCAG	chr16:89347810-89348084(-)$1	274	122	146	20.6928
UGACCUCUCUCUUGUUACGGUGGG	chr17:38187313-38187582(-)$1	269	209	233	22.9201
UGUGGCAAUGGCACGAAAGCUACA	chr6:32945166-32945430(+)$1	264	156	180	24.2212
AGGAUGACGCAGAGAAUUACAGAC	chr6:155578818-155579074(-)$1	256	76	100	22.0036
ACUCGGUUAAGGGAAAGCGCCGAG	chr15:44085120-44085347(+)$1	227	103	127	21.3337
AUAGGGUAAAAAAUAUUUCCGAGA	chr3:50098487-50098754(+)$1	267	81	105	23.1487
CGCCACCCUCUCCUUCCAGGUCAC	chr19:1422244-1422508(+)$1	264	83	107	21.2097
auucauucaacaaauauuuaugga	chr9:117062299-117062503(+)$1	204	167	191	22.6760
ACAGGCCUCAAGAUCCUAAGCCCA	chr3:49052280-49052547(+)$1	267	219	243	23.4640
UCAGAUGAUAAAAUAGAAGAUGAA	chr8:17613226-17613537(-)$1	311	236	260	22.8318
GUUAUCAAAUUAUGGAAAAGAUGA	chr5:118814434-118814752(+)$1	318	44	68	23.7801
AACGCUAGAAAAUUCAUAUGCAAG	chr3:132338211-132338490(-)$1	279	193	217	21.2601
CUCUUCAAGAAAAUGAGGAGGAGG	chr1:46079677-46079940(+)$1	263	91	115	22.5744
UAUCUUACUGUCAACAAGAGAUUA	chr12:26875295-26875533(-)$1	238	69	93	21.3386
UGUCACAAACAUCCUCAAGGUGAG	chr17:38185904-38186155(-)$1	251	136	160	22.4785
AAGUGCGUUCAUCAUUCAGCGAAU	chr2:61406188-61406406(+)$1	218	156	180	24.0232
GCUCCUUCAUAUAGUAUCUGGGUC	chr3:38167551-38167847(-)$1	296	203	227	23.3040
GACCCAUGGUGUGUGUGUUGUGUC	chr15:63352965-63353251(+)$1	286	66	90	22.4759
CUCUGAUUCUUGUAUCCUUUGGAG	chr1:35641917-35642176(-)$1	259	57	81	24.2212
UUCCUGCAGAAGAAGCACGCAGAG	chr16:22326359-22326589(+)$1	230	110	134	22.0359
GUCUGCUUCUUCCUCACACCUUGC	chr15:90347715-90347961(-)$1	246	87	111	21.2601
GUGAGUGACCCUGCGACCCACUCU	chr4:666149-666399(-)$1	250	107	131	19.3368
CUGCUCUCUAUGGUAGCUUUGGGC	chr16:72127761-72128017(+)$1	256	15	39	21.5527
GCACCCCCAAAACCACAGGGCCCC	chr7:73010397-73010633(-)$1	236	172	196	22.0225
UUGGAAUGUGGAAUAGUAAUUCAU	chr16:24805866-24806141(+)$1	275	91	115	22.2357
gguggaggaCCGAGAUUACUACUA	chr11:129992154-129992376(+)$1	222	132	156	21.8518
UGCCUCUGUGCCCCUCCUGAGGCA	chr16:88724165-88724408(-)$1	243	156	180	24.2212
GCCUUGUCUGAAACCUACUCUGAG	chr14:73577561-73577869(+)$1	308	114	138	21.1266
UCUACAAACUUGAUUUGAUGUGAA	chr7:99936294-99936606(+)$1	312	281	305	23.0870
GGCUGGAUUUCAUCACCACCCAUU	chr9:139743581-139743804(+)$1	223	51	75	23.4879
GUGGGCUCCUGGCUACUCGCCCGC	chr19:15784237-15784507(+)$1	270	177	201	24.2212
AGGACUCCGCCCCAACCCGAGUCC	chr9:140347371-140347582(-)$1	211	115	139	22.4127
CUCCAGAUUGCCCAAUCACUGAAG	chr6:131958273-131958515(+)$1	242	95	119	24.0486
UUCCAGAUGACGAGGACUUGGACC	chr15:75194807-75195184(-)$1	377	115	139	22.2831
UUGGAGAAGCAAAACCAUACUCCA	chrX:70510378-70510591(+)$1	213	133	157	23.6481
CUGAUGCAAGCCCUGGAAGAUUUA	chr2:74749716-74749993(-)$1	277	106	130	22.1091
UCCUUUUUCCCCUUCUUUAAAAGC	chr22:44328670-44328963(+)$1	293	64	88	22.3440
UGGCCCCAACUUCCAGCUGGGCUU	chr1:95368858-95369172(-)$1	314	166	190	21.2624
CCUAGGAACAGUUGGGACCCUAGG	chr9:134334535-134334808(+)$1	273	10	34	24.2212
GGUUCCGCAACAAAUCAAAGGUGA	chr2:242206172-242206421(-)$1	249	193	217	22.6809
AGAUGAUUUCACAAAAGUUCAUCU	chrX:102933376-102933674(-)$1	298	93	117	23.1498
GGGGGAGUCUUCACAUUUGCCAUC	chr10:45465512-45465773(+)$1	261	225	249	21.2601
CAUUACUGUCAUCUCCCUGUGAGU	chr9:71766490-71766740(+)$1	250	90	114	22.6700
UCCAGGUACUAUUUUGAAGCGCUG	chr2:131883222-131883491(+)$1	269	98	122	23.0470
GCAGCUGCAGCAAGAAUACAGCCG	chr17:46052470-46052788(+)$1	318	130	154	21.6075
CUGUGUUCGUUUGCCCAUGCGCAG	chr1:11896990-11897305(+)$1	315	16	40	24.1083
CCCUUGCUUUUUUUCCCUAGGAGA	chr14:24607210-24607418(+)$1	208	174	198	21.7103
GCCUGCCGCCGAAACCUAGCGGGU	chr12:56568334-56568651(-)$1	317	173	197	24.2212
AUUUUCCAGCAUCUUUCCGAAAAU	chr2:27820889-27821216(+)$1	327	151	175	24.2212
CCCCAUCUUUACCAUGUCUGUGGA	chr19:10792558-10792810(+)$1	252	216	240	22.5312
gugguggaggaCCGAGAUUACUAC	chr11:129992176-129992401(+)$1	225	108	132	24.2212
AGCGGGAUAAAGUAAAAUUCACUG	chr14:35078747-35079049(-)$1	302	171	195	21.1033
CCUGUUCUUGAAUACAUUGAUCUG	chr6:56963756-56964037(+)$1	281	117	141	22.2412
UGGCAAUGCAACACCUAACACUCC	chr14:73577669-73577961(+)$1	292	66	90	19.9478
UGGUAAUUUUUUGUGUGUUUCUUU	chr9:117054288-117054532(+)$1	244	67	91	21.8623
AGUGGUGACAUAAAGAAAAUCAUU	chr3:196666113-196666336(-)$1	223	141	165	23.1498
AGCUCUGCAGAAACCACAGGGGCU	chr9:117002401-117002647(+)$1	246	193	217	24.2212

#DB
(.(.(((...........))).))	chr13:99030017-99030275(+)$1	1	184	208	23.0846
.(((((............))))).	chr17:73664508-73664807(+)$1	1	236	260	23.4061
..((((..............)).)	chr16:89347810-89348084(-)$1	1	122	146	20.6928
..(((.............))))))	chr17:38187313-38187582(-)$1	1	209	233	22.9201
((((((............))))))	chr6:32945166-32945430(+)$1	1	156	180	24.2212
((..((.............))..)	chr6:155578818-155579074(-)$1	1	76	100	22.0036
.((((((...........))))))	chr15:44085120-44085347(+)$1	1	103	127	21.3337
...(((...........)))...)	chr3:50098487-50098754(+)$1	1	81	105	23.1487
.(((..............))))))	chr19:1422244-1422508(+)$1	1	83	107	21.2097
.(((((.............)))))	chr9:117062299-117062503(+)$1	1	167	191	22.6760
...(((.............)))..	chr3:49052280-49052547(+)$1	1	219	243	23.4640
(((..(...........)..))))	chr8:17613226-17613537(-)$1	1	236	260	22.8318
((((((.............)))))	chr5:118814434-118814752(+)$1	1	44	68	23.7801
((((((................))	chr3:132338211-132338490(-)$1	1	193	217	21.2601
((((((..............))))	chr1:46079677-46079940(+)$1	1	91	115	22.5744
.(((((...........)))))..	chr12:26875295-26875533(-)$1	1	69	93	21.3386
..((((.............)))).	chr17:38185904-38186155(-)$1	1	136	160	22.4785
...(((............)))..)	chr2:61406188-61406406(+)$1	1	156	180	24.0232
(..(((.............)))..	chr3:38167551-38167847(-)$1	1	203	227	23.3040
(((.((............)).)))	chr15:63352965-63353251(+)$1	1	66	90	22.4759
((((((............))))))	chr1:35641917-35642176(-)$1	1	57	81	24.2212
(((((((...........))..))	chr16:22326359-22326589(+)$1	1	110	134	22.0359
((((((................))	chr15:90347715-90347961(-)$1	1	87	111	21.2601
..(((((...........))))).	chr4:666149-666399(-)$1	1	107	131	19.3368
((((((..............))))	chr16:72127761-72128017(+)$1	1	15	39	21.5527
(..(((...........)))..))	chr7:73010397-73010633(-)$1	1	172	196	22.0225
(..((((...........))))))	chr16:24805866-24806141(+)$1	1	91	115	22.2357
.((((((...........)).)))	chr11:129992154-129992376(+)$1	1	132	156	21.8518
((((((............))))))	chr16:88724165-88724408(-)$1	1	156	180	24.2212
(((((................)))	chr14:73577561-73577869(+)$1	1	114	138	21.1266
(.((((............)))).)	chr7:99936294-99936606(+)$1	1	281	305	23.0870
((.(((.............)))..	chr9:139743581-139743804(+)$1	1	51	75	23.4879
((((((............))))))	chr19:15784237-15784507(+)$1	1	177	201	24.2212
.((((((...........))))))	chr9:140347371-140347582(-)$1	1	115	139	22.4127
((.(((............))).))	chr6:131958273-131958515(+)$1	1	95	119	24.0486
.(((((...........))))).)	chr15:75194807-75195184(-)$1	1	115	139	22.2831
((((((.............)))))	chrX:70510378-70510591(+)$1	1	133	157	23.6481
((((..(...........)..)))	chr2:74749716-74749993(-)$1	1	106	130	22.1091
(((((((...........))))).	chr22:44328670-44328963(+)$1	1	64	88	22.3440
.(((((............))))).	chr1:95368858-95369172(-)$1	1	166	190	21.2624
((((((............))))))	chr9:134334535-134334808(+)$1	1	10	34	24.2212
(...((.............))...	chr2:242206172-242206421(-)$1	1	193	217	22.6809
((((((............))))))	chrX:102933376-102933674(-)$1	1	93	117	23.1498
((((((................))	chr10:45465512-45465773(+)$1	1	225	249	21.2601
(.((((............))))))	chr9:71766490-71766740(+)$1	1	90	114	22.6700
(((((((...........)).)))	chr2:131883222-131883491(+)$1	1	98	122	23.0470
((.((((...........)))).)	chr17:46052470-46052788(+)$1	1	130	154	21.6075
((((((............))))))	chr1:11896990-11897305(+)$1	1	16	40	24.1083
.(((..............))).))	chr14:24607210-24607418(+)$1	1	174	198	21.7103
((((((............))))))	chr12:56568334-56568651(-)$1	1	173	197	24.2212
((((((............))))))	chr2:27820889-27821216(+)$1	1	151	175	24.2212
(.((((.............)))).	chr19:10792558-10792810(+)$1	1	216	240	22.5312
((((((............))))))	chr11:129992176-129992401(+)$1	1	108	132	24.2212
(((((((...........)).)))	chr14:35078747-35079049(-)$1	1	171	195	21.1033
((.(.((...........)).).)	chr6:56963756-56964037(+)$1	1	117	141	22.2412
((................))))..	chr14:73577669-73577961(+)$1	1	66	90	19.9478
(..(((................))	chr9:117054288-117054532(+)$1	1	67	91	21.8623
((((((............))))))	chr3:196666113-196666336(-)$1	1	141	165	23.1498
((((((............))))))	chr9:117002401-117002647(+)$1	1	193	217	24.2212

#PSSM
g : 0.18	f : 0.15	d : 0.10	e : 0.08	! : 0.06	c : 0.06	[ : 0.05	" : 0.05	: : 0.05	= : 0.05	# : 0.03	b : 0.03	$ : 0.01	% : 0.01	i : 0.01	h : 0.01	
g : 0.18	f : 0.15	e : 0.11	! : 0.10	d : 0.10	[ : 0.06	" : 0.06	c : 0.06	= : 0.05	# : 0.01	: : 0.01	b : 0.01	i : 0.01	h : 0.01	
g : 0.18	f : 0.15	e : 0.13	d : 0.11	! : 0.08	[ : 0.06	c : 0.05	" : 0.05	= : 0.05	a : 0.01	b : 0.01	# : 0.01	i : 0.01	h : 0.01	y : 0.01	
c : 0.18	g : 0.16	f : 0.15	e : 0.13	d : 0.13	= : 0.05	[ : 0.03	! : 0.03	b : 0.01	" : 0.01	i : 0.01	h : 0.01	a : 0.01	y : 0.01	
c : 0.16	g : 0.16	f : 0.15	e : 0.13	d : 0.11	b : 0.06	= : 0.05	w : 0.03	! : 0.03	i : 0.01	h : 0.01	[ : 0.01	y : 0.01	
g : 0.16	c : 0.15	b : 0.15	f : 0.13	e : 0.11	d : 0.10	w : 0.03	= : 0.03	y : 0.03	v : 0.01	a : 0.01	! : 0.01	i : 0.01	
u : 0.32	v : 0.18	y : 0.10	w : 0.08	t : 0.08	b : 0.08	f : 0.03	e : 0.03	d : 0.03	c : 0.01	a : 0.01	
u : 0.32	t : 0.30	v : 0.18	y : 0.10	w : 0.08	
u : 0.32	t : 0.30	v : 0.18	y : 0.10	w : 0.08	
u : 0.32	t : 0.30	v : 0.18	y : 0.10	w : 0.08	
u : 0.32	t : 0.30	v : 0.18	y : 0.10	w : 0.08	
u : 0.32	t : 0.30	v : 0.18	y : 0.10	w : 0.08	
u : 0.32	t : 0.30	v : 0.18	y : 0.10	w : 0.08	
u : 0.32	t : 0.30	v : 0.18	y : 0.10	w : 0.08	
u : 0.32	t : 0.30	v : 0.18	y : 0.10	w : 0.08	
u : 0.32	t : 0.30	v : 0.18	y : 0.10	w : 0.08	
u : 0.32	t : 0.30	v : 0.18	y : 0.10	w : 0.08	
u : 0.32	t : 0.22	v : 0.18	y : 0.10	w : 0.08	c : 0.03	e : 0.03	a : 0.01	
v : 0.16	g : 0.15	c : 0.13	e : 0.10	b : 0.10	y : 0.08	d : 0.08	f : 0.06	w : 0.05	2 : 0.01	a : 0.01	i : 0.01	
c : 0.18	g : 0.16	b : 0.13	e : 0.11	d : 0.11	y : 0.08	f : 0.06	w : 0.05	2 : 0.03	= : 0.01	i : 0.01	
g : 0.18	c : 0.15	e : 0.11	d : 0.11	f : 0.08	y : 0.08	] : 0.08	b : 0.05	2 : 0.05	= : 0.03	3 : 0.01	i : 0.01	
g : 0.18	d : 0.16	e : 0.13	f : 0.11	2 : 0.06	y : 0.06	] : 0.05	c : 0.05	= : 0.05	3 : 0.03	b : 0.01	i : 0.01	h : 0.01	a : 0.01	
g : 0.20	f : 0.18	e : 0.11	d : 0.10	] : 0.08	3 : 0.06	2 : 0.05	= : 0.05	4 : 0.03	c : 0.03	a : 0.01	b : 0.01	i : 0.01	h : 0.01	
g : 0.22	f : 0.20	d : 0.10	e : 0.08	] : 0.05	b : 0.05	= : 0.05	3 : 0.05	i : 0.03	4 : 0.03	2 : 0.03	: : 0.03	c : 0.03	h : 0.01	

#score	1333.174550219468
#seq	59
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_transcript_m2_run2.txt

#BEAR
ccc$$$$$==========oooooo==========ccc	chr1:988044-988270(+)$1	226	177	214	13.7447
:bb[ccc[a[eeeeecccnnnnnccc22eeeeea]cc	chr19:47733990-47734223(-)$1	233	54	91	12.5079
)))gggggggccceeeeennnnneeeee22ccc]ggg	chr20:1165583-1165855(-)$1	272	182	219	12.6443
"""eeeee!!bb!!cccooooooccc22bbeeeee33	chr19:42409330-42409580(+)$1	250	59	96	13.7885
[ccc!!a[ccca!!ddddnnnnndddd22a]ccc]a2	chr17:55517714-55517974(+)$1	260	33	70	17.4024
hhaa[a[bb[dddd[cccnnnnnccc]dddd]bb]a]	chr11:73088031-73088307(+)$1	276	57	94	12.7160
[cccffffff"""eeeeennnnneeeee]ffffff]c	chr22:50672698-50672950(-)$1	252	210	247	14.1414
[bb[a[a$$$$$eeeeennnnneeeee22a]abb]a]	chr2:17921035-17921334(-)$1	299	238	275	13.4712
[bb[bb"""abb[ddddoooooodddd]bb]a4444b	chr2:3461564-3461813(+)$1	249	112	149	14.0955
g!!===============nnnnn==============	chr21:45395073-45395325(+)$1	252	96	133	15.3935
[eeeee!!ccc"""ddddoooooodddd22ccc]eee	chr22:49974622-49974912(-)$1	290	204	241	14.3928
##ddddeeeee[a[ddddnnnnndddd]a]eeeee]d	chr1:964724-965062(+)$1	338	200	237	12.5642
iiiiiiii[ccc[eeeeennnnneeeee]ccciiiii	chr21:44268841-44269090(-)$1	249	85	122	15.0844
fffff"""bb[a[eeeeennnnneeeee]a]bb333f	chr15:27595554-27595805(+)$1	251	171	208	15.1477
ddd[bbggggggg!!cccnnnnnccc22ggggggg33	chr19:3149757-3150038(-)$1	281	164	201	14.2816
dddffffff[bb!!ddddooooooddddbbffffff]	chr19:1409743-1409981(+)$1	238	17	54	12.4735
"""dddd!!ccc[ccc[annnnna]ccc]cccdddd]	chr1:228331214-228331481(+)$1	267	186	223	13.8169
dd[bb[gggggggeeeeennnnneeeee4444ggggg	chr17:79204707-79204977(-)$1	270	182	219	13.9979
dd"""ffffff[a[ddddoooooodddd]a]ffffff	chr9:137259545-137259796(+)$1	251	24	61	13.6421
cc[ccc!!dddd!!ddddoooooodddd]ddddccc]	chr2:10349614-10349958(+)$1	344	293	330	13.9306
ggggg"""ccc[eeeeeooooooeeeee]ccc66666	chr2:97559795-97560069(-)$1	274	75	112	13.0259
!!ggggggg[bb!!cccnnnnnccc333bbggggggg	chr19:16986688-16986982(+)$1	294	138	175	13.8787
!ccc####bb"""cccrrrrrrrrrccc4444bb333	chr19:52551250-52551579(-)$1	329	255	292	13.1187
!ccc[a[a[ccc[eeeeennnnneeeee]ccc]a]a]	chr4:187326881-187327173(-)$1	292	26	63	16.2324
####a[ffffff"""cccooooooccc4444ffffff	chr19:35492910-35493181(+)$1	271	83	120	14.5168
"""bb!!eeeee!!cccooooooccc22eeeee22bb	chr19:944239-944556(+)$1	317	200	237	12.8529
eeee[ccc$$$$$ccc[annnnna]ccc333ccc]ee	chr6:167369313-167369579(-)$1	266	146	183	13.9245
====[a"""dddd!!cccnnnnnccc22dddd]a===	chr10:74540158-74540464(+)$1	306	41	78	14.7959
gggg!!a####a[eeeeellleeeee]a22a22gggg	chr8:145020712-145021012(-)$1	300	148	185	12.5817
ddda[a[a[a[a[a[a[annnnna]a]a]a]a]a]a]	chr22:35552207-35552495(-)$1	288	40	77	16.4027
adddd"""ccc!!addddoooooodddd]a22ccc33	chr6:99861132-99861440(-)$1	308	81	118	15.2647
fffdddd[ccc!!ddddoooooodddd4444ccc]dd	chr3:13008015-13008300(-)$1	285	142	179	14.3701
::iiiiiiiii"""cccooooooccc333iiiiiiii	chr19:576878-577122(+)$1	244	103	140	14.5356
ffffff!!a[bb[ddddoooooodddd]bb]a]ffff	chr19:39645898-39646182(+)$1	284	109	146	13.8585
"""ccc[a[a[a[a[a[annnnna]a]a]a]a]a]cc	chr16:81660199-81660442(+)$1	243	176	213	16.6448
eeggggggg[bb[eeeeennnnneeeee]bb]ggggg	chr7:1892907-1893158(-)$1	251	172	209	13.8198
ii[a[bb[ccc####bboooooobb333ccc]bb]a2	chr11:63911455-63911763(-)$1	308	58	95	14.0223
fffff"""bb####eeeeemmmmeeeee333bbffff	chr8:145025885-145026146(-)$1	261	220	257	11.9203
ffbb!!bbffffff[cccnnnnnccc333ffffff]b	chr16:89005872-89006138(-)$1	266	109	146	12.7909
b]ccciiiiiiiii[bboooooobb333iiiiiiiii	chr1:10615614-10615865(+)$1	251	139	176	12.8030
++ccc####a[bb[cccooooooccc]bba333ccc>	chr1:156845356-156845619(+)$1	263	157	194	13.3629
===========####ddddmmmmdddd==========	chr12:124946091-124946352(-)$1	261	11	48	13.5459
gggggg[ddddbb[ddddnnnnndddd]bb333dddd	chr4:78740437-78740689(-)$1	252	54	91	12.8079
[ccc[ccc[cccxxxxxxxxxxxxxxxccc]ccc]cc	chr19:16242179-16242447(+)$1	268	223	260	12.0177
[bb[ccc[ccc$$$$$ddddllldddd333ccc]ccc	chr22:20110580-20110805(+)$1	225	137	174	12.3670
fffff[ggggggg!!cccooooooccc22ggggggg]	chr1:987651-987877(+)$1	226	152	189	14.2731
cccccc!!ccc####ddddmmmmddddccc]ccc333	chr3:49015826-49016074(+)$1	248	135	172	13.4502
[a[a"""ccc[arrrrrrrrra]ccc333a]a]a]a5	chr22:47044365-47044632(+)$1	267	60	97	11.7972
dddd!!dddd####cccooooooccc4444dddd22d	chr2:121035468-121035729(+)$1	261	128	165	13.6084
e!!ffffff[a[eeeeeooooooeeeee]a]ffffff	chr19:4011961-4012259(+)$1	298	105	142	13.5330
[a####a[bb[a[a[ddddmmmmdddd]a]a]bb]a4	chr4:187327131-187327382(-)$1	251	8	45	12.8364
gggggggaeeeee!!cccnnnnnccc]eeeee]a444	chr1:230243240-230243574(+)$1	334	196	233	13.7750

#otherMatches

#Seq PSSM
uccauggguccauguauguguguguauauguggggga	chr1:988044-988270(+)$1	226	177	214	13.7447
CGAAUCCUCUCCGGCGGCGAUCGGCCAGGCCGGGUGG	chr19:47733990-47734223(-)$1	233	54	91	12.5079
UGCGACCAGGGGACCCGGCCUCCCCGGGCCUCCGCCU	chr20:1165583-1165855(-)$1	272	182	219	12.6443
UAAGCCCCGGCCCAGCCCGAGCAGGUGAGGGGGGCCA	chr19:42409330-42409580(+)$1	250	59	96	13.7885
GACAGUCUUACCUGGGGUUUGUUAUCCgugugugugu	chr17:55517714-55517974(+)$1	260	33	70	17.4024
CAGAGGGGCUCUGUGUGUGGGAGACAGGCAGCGUGUG	chr11:73088031-73088307(+)$1	276	57	94	12.7160
GCUGCCAUGGGUGGGUGUGGGUGAUGCUGCCAUGGAC	chr22:50672698-50672950(-)$1	252	210	247	14.1414
guguguguUUAAAgagaaaggaucucucucuccgggu	chr2:17921035-17921334(-)$1	299	238	275	13.4712
CUGCGCCCGGGGAGAAGACACGCCUUCACCACAAAAG	chr2:3461564-3461813(+)$1	249	112	149	14.0955
uuuggugugugcuggcauguagugugcuggcgugugc	chr21:45395073-45395325(+)$1	252	96	133	15.3935
UUAUGCCUGGCUGAGCGCCugugugugugugccugua	chr22:49974622-49974912(-)$1	290	204	241	14.3928
GAGCAGGGGUGGUGCUGGGCAGGCCAGGAAUACCCAU	chr1:964724-965062(+)$1	338	200	237	12.5642
CGCCGCGUGAUCGUGCGCUGUGUGUGUGAGGUGCGCG	chr21:44268841-44269090(-)$1	249	85	122	15.0844
CCUCCUCUCUACGUCCagggagucuggagggagucug	chr15:27595554-27595805(+)$1	251	171	208	15.1477
GCUCAGGGGGAGCAUGGCACCCAGCCCCGCUCUUUAC	chr19:3149757-3150038(-)$1	281	164	201	14.2816
CAGGAGGGUGCUGAGCUUGGAUGGAAGCAGGCCCUCU	chr19:1409743-1409981(+)$1	238	17	54	12.4735
GAUGGUUGGCUGGCACGUAGAGGAGGUGGCAGGGCUG	chr1:228331214-228331481(+)$1	267	186	223	13.8169
CACGUGCUUCUCGCUGGGGUCUGUCCAGGAGCCGGGG	chr17:79204707-79204977(-)$1	270	182	219	13.9979
CCUUAGCACCUGCAGCUCCCCCUCGGGUGGGGGGUGC	chr9:137259545-137259796(+)$1	251	24	61	13.6421
UGGGCUCAGUGAAUCGGUGCUUUGACUGCUCACAGCG	chr2:10349614-10349958(+)$1	344	293	330	13.9306
cugggaaguaugugugauccauuuuacagaugagaac	chr2:97559795-97560069(-)$1	274	75	112	13.0259
GAGGCGGGGUGGCCGCACCACCUGCUUUCCUCCCGCC	chr19:16986688-16986982(+)$1	294	138	175	13.8787
CAGGUCCGAGUACCUCCUCCACAAUGAGUUUUCUAAU	chr19:52551250-52551579(-)$1	329	255	292	13.1187
GACUGUGUGCACGUGUGUGUGUAACAUAGGUGGAGGA	chr4:187326881-187327173(-)$1	292	26	63	16.2324
CUCUGUGGUUUUGUGUGUGUGUGAACAGUGUGAGACC	chr19:35492910-35493181(+)$1	271	83	120	14.5168
UCUGCCACGGCCUCAGCCCCGUUGCUUCGGUCGAUGC	chr19:944239-944556(+)$1	317	200	237	12.8529
CCCCUGGGAAGAAGUUGGGAAGUUGAGCACGCCUCGG	chr6:167369313-167369579(-)$1	266	146	183	13.9245
GCUGUGGAAGGACAAAAUGGAAAAUUAAGUCUGCCAG	chr10:74540158-74540464(+)$1	306	41	78	14.7959
GCUGGGCGGGGGGUCUGCUGGGCGGGGCAGGAACAGU	chr8:145020712-145021012(-)$1	300	148	185	12.5817
AAGAGAGAGAGAGAGAGAgugugugugugugugugug	chr22:35552207-35552495(-)$1	288	40	77	16.4027
cUCAUAACCCAGACUCUACauggauggauggauggau	chr6:99861132-99861440(-)$1	308	81	118	15.2647
GUCAGGGAUGGAGUCUGGUGUGUCAGAGGGGCCAACC	chr3:13008015-13008300(-)$1	285	142	179	14.3701
UAGCGGUGCCUGGGGAGUCUGACCUCAGAAGGUGCUG	chr19:576878-577122(+)$1	244	103	140	14.5356
gugcucagggcuggcauggggaggugcaggguggagu	chr19:39645898-39646182(+)$1	284	109	146	13.8585
GUGACAGAGAGAGAGAGAgugugugugugugugugug	chr16:81660199-81660442(+)$1	243	176	213	16.6448
CUACCUGCUGUUGCUGUGCCACCCACAGgggaggcag	chr7:1892907-1893158(-)$1	251	172	209	13.8198
UUGGGUUGGACGGGGUGCUAAGUCAGAAGUCGGGGCA	chr11:63911455-63911763(-)$1	308	58	95	14.0223
CAGCCAUCCAUCUGGCCUGCAGACGGGCACUUGGGCU	chr8:145025885-145026146(-)$1	261	220	257	11.9203
GUGCAAGCCGGAGCUGCCGGGAGGGUCCUGUUCUGUG	chr16:89005872-89006138(-)$1	266	109	146	12.7909
UGCCUGUGUUUACCAAGAAUAUCCUGGAGGUAGAUAU	chr1:10615614-10615865(+)$1	251	139	176	12.8030
uguguguguguguguAGAAGCCCCUAGGCCUGAACGA	chr1:156845356-156845619(+)$1	263	157	194	13.3629
uguauauagguauucgugcaucugugcaccugugugc	chr12:124946091-124946352(-)$1	261	11	48	13.5459
CGGGCGGGAGCGAGGCCCGCCGUGGGUGUUUGUGUUU	chr4:78740437-78740689(-)$1	252	54	91	12.8079
ggauggaugguuggaaagggauggauggaugguuggu	chr19:16242179-16242447(+)$1	268	223	260	12.0177
ggugucuggggagguguacaguguguggugucugGGG	chr22:20110580-20110805(+)$1	225	137	174	12.3670
auguagauaugcgugugugacuaugcggccgugugug	chr1:987651-987877(+)$1	226	152	189	14.2731
ggcuggucucaaauuccugaccucaggugauccaucc	chr3:49015826-49016074(+)$1	248	135	172	13.4502
gugggugaaugggagaagggaugguuagauggguggg	chr22:47044365-47044632(+)$1	267	60	97	11.7972
augugaaugugagagcgugagugugugugaaugugag	chr2:121035468-121035729(+)$1	261	128	165	13.6084
uggaggugugUUUGGUUGUCGUGAGCUGUGGGUAUUU	chr19:4011961-4012259(+)$1	298	105	142	13.5330
GGUGUGUGUGGGGGGGCAUGAgugugugcguguaggu	chr4:187327131-187327382(-)$1	251	8	45	12.8364
UUCCUGUGACUAAAAGUGGUUUACAUAUUGGUGCUUU	chr1:230243240-230243574(+)$1	334	196	233	13.7750

#DB
(((.....((((((((((......)))))))))))))	chr1:988044-988270(+)$1	1	177	214	13.7447
.((.(((.(.((((((((.....)))..)))))).))	chr19:47733990-47734223(-)$1	1	54	91	12.5079
...(((((((((((((((.....)))))..))).)))	chr20:1165583-1165855(-)$1	1	182	219	12.6443
...(((((..((..(((......)))..)))))))..	chr19:42409330-42409580(+)$1	1	59	96	13.7885
.(((..(.((((..((((.....))))..).))).).	chr17:55517714-55517974(+)$1	1	33	70	17.4024
((((.(.((.((((.(((.....))).)))).)).).	chr11:73088031-73088307(+)$1	1	57	94	12.7160
.(((((((((...(((((.....))))).)))))).)	chr22:50672698-50672950(-)$1	1	210	247	14.1414
.((.(.(.....(((((.....)))))..).))).).	chr2:17921035-17921334(-)$1	1	238	275	13.4712
.((.((...(((.((((......)))).)).)....)	chr2:3461564-3461813(+)$1	1	112	149	14.0955
(..(((((((((((((((.....))))))))))))))	chr21:45395073-45395325(+)$1	1	96	133	15.3935
.(((((..(((...((((......))))..))).)))	chr22:49974622-49974912(-)$1	1	204	241	14.3928
..(((((((((.(.((((.....)))).).))))).)	chr1:964724-965062(+)$1	1	200	237	12.5642
((((((((.(((.(((((.....))))).))))))))	chr21:44268841-44269090(-)$1	1	85	122	15.0844
(((((...((.(.(((((.....))))).).))...)	chr15:27595554-27595805(+)$1	1	171	208	15.1477
(((.(((((((((..(((.....)))..)))))))..	chr19:3149757-3150038(-)$1	1	164	201	14.2816
(((((((((.((..((((......)))))))))))).	chr19:1409743-1409981(+)$1	1	17	54	12.4735
...((((..(((.(((.(.....).))).))))))).	chr1:228331214-228331481(+)$1	1	186	223	13.8169
((.((.((((((((((((.....)))))....)))))	chr17:79204707-79204977(-)$1	1	182	219	13.9979
((...((((((.(.((((......)))).).))))))	chr9:137259545-137259796(+)$1	1	24	61	13.6421
((.(((..((((..((((......)))).))))))).	chr2:10349614-10349958(+)$1	1	293	330	13.9306
(((((...(((.(((((......))))).))).....	chr2:97559795-97560069(-)$1	1	75	112	13.0259
..(((((((.((..(((.....)))...)))))))))	chr19:16986688-16986982(+)$1	1	138	175	13.8787
.(((....((...(((.........)))....))...	chr19:52551250-52551579(-)$1	1	255	292	13.1187
.(((.(.(.(((.(((((.....))))).))).).).	chr4:187326881-187327173(-)$1	1	26	63	16.2324
....(.((((((...(((......)))....))))))	chr19:35492910-35493181(+)$1	1	83	120	14.5168
...((..(((((..(((......)))..)))))..))	chr19:944239-944556(+)$1	1	200	237	12.8529
((((.(((.....(((.(.....).)))...))).))	chr6:167369313-167369579(-)$1	1	146	183	13.9245
((((.(...((((..(((.....)))..)))).))))	chr10:74540158-74540464(+)$1	1	41	78	14.7959
((((..(....(.(((((...))))).)..)..))))	chr8:145020712-145021012(-)$1	1	148	185	12.5817
)))(.(.(.(.(.(.(.(.....).).).).).).).	chr22:35552207-35552495(-)$1	1	40	77	16.4027
(((((...(((..(((((......)))).)..)))..	chr6:99861132-99861440(-)$1	1	81	118	15.2647
)))((((.(((..((((......))))....))).))	chr3:13008015-13008300(-)$1	1	142	179	14.3701
..(((((((((...(((......)))...))))))))	chr19:576878-577122(+)$1	1	103	140	14.5356
((((((..(.((.((((......)))).)).).))))	chr19:39645898-39646182(+)$1	1	109	146	13.8585
...(((.(.(.(.(.(.(.....).).).).).).))	chr16:81660199-81660442(+)$1	1	176	213	16.6448
))(((((((.((.(((((.....))))).)).)))))	chr7:1892907-1893158(-)$1	1	172	209	13.8198
((.(.((.(((....((......))...))).)).).	chr11:63911455-63911763(-)$1	1	58	95	14.0223
(((((...((....(((((....)))))...))))))	chr8:145025885-145026146(-)$1	1	220	257	11.9203
((((..((((((((.(((.....)))...)))))).)	chr16:89005872-89006138(-)$1	1	109	146	12.7909
).)))(((((((((.((......))...)))))))))	chr1:10615614-10615865(+)$1	1	139	176	12.8030
..(((....(.((.(((......))).)))...))).	chr1:156845356-156845619(+)$1	1	157	194	13.3629
(((((((((((....((((....))))))))))))))	chr12:124946091-124946352(-)$1	1	11	48	13.5459
((((((.((((((.((((.....)))).))...))))	chr4:78740437-78740689(-)$1	1	54	91	12.8079
.(((.(((.(((...............))).))).))	chr19:16242179-16242447(+)$1	1	223	260	12.0177
.((.(((.(((.....((((...))))...))).)))	chr22:20110580-20110805(+)$1	1	137	174	12.3670
(((((.(((((((..(((......)))..))))))).	chr1:987651-987877(+)$1	1	152	189	14.2731
((((((..(((....((((....))))))).)))...	chr3:49015826-49016074(+)$1	1	135	172	13.4502
.(.(...(((.(.........).)))...).).).).	chr22:47044365-47044632(+)$1	1	60	97	11.7972
((((..((((....(((......)))....))))..)	chr2:121035468-121035729(+)$1	1	128	165	13.6084
(..((((((.(.(((((......))))).).))))))	chr19:4011961-4012259(+)$1	1	105	142	13.5330
.(....(.((.(.(.((((....)))).).).)).).	chr4:187327131-187327382(-)$1	1	8	45	12.8364
(((((((((((((..(((.....))).))))).)...	chr1:230243240-230243574(+)$1	1	196	233	13.7750

#PSSM
[ : 0.17	f : 0.11	d : 0.11	g : 0.09	" : 0.07	c : 0.05	! : 0.05	e : 0.05	: : 0.03	# : 0.03	i : 0.03	= : 0.03	) : 0.01	h : 0.01	a : 0.01	b : 0.01	+ : 0.01	
c : 0.15	d : 0.13	f : 0.11	b : 0.07	" : 0.07	g : 0.07	! : 0.05	e : 0.05	# : 0.03	i : 0.03	= : 0.03	a : 0.03	) : 0.01	h : 0.01	: : 0.01	] : 0.01	+ : 0.01	
c : 0.17	d : 0.11	g : 0.11	b : 0.09	" : 0.09	f : 0.09	[ : 0.07	! : 0.03	e : 0.03	i : 0.03	# : 0.03	= : 0.03	) : 0.01	a : 0.01	
c : 0.19	g : 0.13	f : 0.11	[ : 0.09	d : 0.09	a : 0.07	e : 0.05	= : 0.05	b : 0.05	i : 0.03	# : 0.03	$ : 0.01	" : 0.01	
c : 0.13	[ : 0.13	f : 0.13	g : 0.11	! : 0.07	b : 0.07	d : 0.07	e : 0.03	a : 0.03	= : 0.03	i : 0.03	" : 0.03	# : 0.03	$ : 0.01	
c : 0.13	g : 0.09	! : 0.09	f : 0.09	" : 0.09	a : 0.07	[ : 0.07	b : 0.05	d : 0.05	i : 0.05	# : 0.05	e : 0.03	= : 0.03	$ : 0.01	
g : 0.13	" : 0.13	[ : 0.09	f : 0.09	! : 0.09	c : 0.07	a : 0.07	i : 0.05	d : 0.05	e : 0.03	= : 0.03	# : 0.03	b : 0.03	$ : 0.01	
[ : 0.11	g : 0.11	" : 0.11	f : 0.09	! : 0.09	a : 0.07	e : 0.05	i : 0.05	# : 0.05	c : 0.05	$ : 0.03	b : 0.03	= : 0.03	d : 0.03	
c : 0.17	g : 0.11	f : 0.11	b : 0.09	[ : 0.09	= : 0.05	e : 0.05	d : 0.05	a : 0.03	! : 0.03	$ : 0.03	" : 0.03	# : 0.03	i : 0.03	
c : 0.24	[ : 0.13	g : 0.07	f : 0.07	a : 0.07	b : 0.07	d : 0.07	= : 0.05	e : 0.05	$ : 0.03	i : 0.03	! : 0.01	# : 0.01	
c : 0.24	b : 0.11	[ : 0.11	e : 0.07	d : 0.07	= : 0.05	g : 0.05	f : 0.05	# : 0.05	" : 0.03	$ : 0.03	i : 0.03	a : 0.01	
b : 0.15	a : 0.13	c : 0.09	# : 0.09	" : 0.07	[ : 0.07	e : 0.05	d : 0.05	$ : 0.05	g : 0.05	= : 0.03	f : 0.03	! : 0.03	i : 0.01	
[ : 0.21	! : 0.15	e : 0.09	" : 0.09	# : 0.09	g : 0.05	= : 0.03	d : 0.03	a : 0.03	$ : 0.03	b : 0.03	c : 0.01	f : 0.01	i : 0.01	x : 0.01	r : 0.01	
e : 0.23	! : 0.19	# : 0.09	d : 0.07	[ : 0.07	a : 0.07	" : 0.05	c : 0.05	= : 0.03	f : 0.01	i : 0.01	x : 0.01	$ : 0.01	r : 0.01	
e : 0.24	d : 0.21	c : 0.17	[ : 0.11	! : 0.07	# : 0.05	= : 0.03	" : 0.01	x : 0.01	$ : 0.01	r : 0.01	
c : 0.32	d : 0.26	e : 0.23	= : 0.03	a : 0.03	b : 0.03	x : 0.01	$ : 0.01	r : 0.01	
d : 0.28	c : 0.26	e : 0.23	[ : 0.07	= : 0.03	r : 0.03	b : 0.03	x : 0.01	
o : 0.23	d : 0.23	e : 0.17	c : 0.15	a : 0.07	= : 0.03	n : 0.03	r : 0.03	x : 0.01	
n : 0.44	o : 0.38	d : 0.07	r : 0.03	l : 0.01	e : 0.01	x : 0.01	
n : 0.44	o : 0.38	m : 0.07	r : 0.03	l : 0.01	x : 0.01	d : 0.01	
n : 0.44	o : 0.38	m : 0.07	r : 0.03	l : 0.03	x : 0.01	
n : 0.44	o : 0.38	m : 0.07	r : 0.01	e : 0.01	x : 0.01	l : 0.01	a : 0.01	
n : 0.40	o : 0.38	m : 0.07	e : 0.03	c : 0.01	r : 0.01	x : 0.01	l : 0.01	] : 0.01	
c : 0.24	e : 0.23	d : 0.19	o : 0.15	a : 0.07	b : 0.03	= : 0.01	r : 0.01	x : 0.01	
c : 0.28	d : 0.28	e : 0.23	] : 0.07	= : 0.03	b : 0.03	r : 0.01	x : 0.01	
c : 0.32	d : 0.28	e : 0.23	3 : 0.05	= : 0.03	a : 0.03	x : 0.01	
d : 0.28	e : 0.21	] : 0.11	3 : 0.11	2 : 0.09	c : 0.09	= : 0.03	x : 0.01	4 : 0.01	
e : 0.21	2 : 0.15	3 : 0.13	d : 0.11	] : 0.09	c : 0.09	= : 0.05	4 : 0.05	a : 0.05	b : 0.01	
] : 0.24	b : 0.13	2 : 0.11	3 : 0.11	4 : 0.09	= : 0.05	e : 0.05	c : 0.05	d : 0.03	a : 0.03	g : 0.01	i : 0.01	
a : 0.19	b : 0.13	c : 0.13	4 : 0.09	= : 0.05	e : 0.05	2 : 0.05	d : 0.05	3 : 0.05	f : 0.03	] : 0.03	g : 0.03	i : 0.03	
] : 0.23	c : 0.15	e : 0.09	d : 0.07	4 : 0.07	3 : 0.07	= : 0.05	f : 0.05	g : 0.05	a : 0.03	i : 0.03	2 : 0.01	b : 0.01	
c : 0.23	f : 0.11	a : 0.11	e : 0.09	] : 0.07	= : 0.05	g : 0.05	d : 0.05	b : 0.03	4 : 0.03	2 : 0.03	i : 0.03	3 : 0.03	
c : 0.17	b : 0.13	] : 0.13	f : 0.11	g : 0.09	e : 0.07	= : 0.05	i : 0.05	d : 0.05	3 : 0.03	4 : 0.01	6 : 0.01	2 : 0.01	
c : 0.15	f : 0.15	a : 0.13	g : 0.11	b : 0.09	= : 0.05	] : 0.05	i : 0.05	d : 0.05	e : 0.03	4 : 0.01	3 : 0.01	6 : 0.01	2 : 0.01	
] : 0.24	f : 0.15	g : 0.13	c : 0.09	e : 0.05	= : 0.05	i : 0.05	3 : 0.05	4 : 0.03	d : 0.03	2 : 0.03	6 : 0.01	
a : 0.15	c : 0.13	g : 0.11	3 : 0.11	f : 0.11	] : 0.05	= : 0.05	i : 0.05	d : 0.05	4 : 0.03	e : 0.03	6 : 0.01	b : 0.01	2 : 0.01	
] : 0.15	c : 0.11	f : 0.11	g : 0.09	3 : 0.09	d : 0.07	b : 0.05	= : 0.05	i : 0.05	2 : 0.03	e : 0.03	4 : 0.03	6 : 0.01	> : 0.01	5 : 0.01	

#score	717.9748210696422
#seq	52
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_transcript_m2_run2.txt

#BEAR
ddd:ccc!!ddddoooooodddd22cccF	chr3:52841783-52842009(+)$1	226	113	142	14.6770
iiiiiiiii[cccooooooccc]iiiiii	chr10:79796903-79797139(+)$1	236	35	64	13.1158
e[ccc[dddd[bboooooobbdddd]ccc	chr3:133474229-133474439(+)$1	210	18	47	11.7151
cc[dddd!!ddddoooooodddd]ddddc	chr2:166769988-166770237(-)$1	249	177	206	15.6641
%ffffff!!ddddooooooddddffffff	chr14:39771230-39771473(+)$1	243	87	116	13.8171
dddd!!a!!ddddoooooodddd22a22d	chr16:84129207-84129466(-)$1	259	46	75	15.6360
dddddd"""ddddmmmmdddd333ddddd	chr20:30729197-30729437(+)$1	240	137	166	10.5682
::dddd"""ddddoooooodddd333ddd	chr12:72030295-72030535(-)$1	240	0	29	15.0259
gggggg"""ddddooooooddddgggggg	chr6:119569325-119569567(-)$1	242	203	232	15.9627
ggggg####ddddoooooodddd666666	chr17:38318252-38318510(+)$1	258	94	123	13.7388
FFFF:ccc[ddddoooooodddd22ccc:	chr9:14859279-14859558(-)$1	279	14	43	12.1122
!bb[ccc!!ddddnnnnndddd22cccbb	chr16:3900676-3900983(-)$1	307	170	199	11.1987
((((ccc[eeeeeooooooeeeee]cccd	chr20:3180900-3181108(-)$1	208	145	174	10.8243
b[dddd"""ddddmmmmdddd333dddd]	chr5:52160702-52161016(+)$1	314	55	84	10.9259
::eeeee!!ddddoooooodddd]eeeee	chr1:16893622-16893887(-)$1	265	174	203	13.7203
f!!ccc[ffffffooooooffffff]ccc	chr2:55791410-55791693(-)$1	283	39	68	11.1838
ii!!ccc####bboooooobb22ccc22i	chr1:245027152-245027426(-)$1	274	163	192	12.1844
(eeeee"""ddddaooooooa]dddd333	chr19:57325301-57325548(-)$1	247	21	50	13.6229
gggggg!!ccc[annnnna]ccc333ggg	chr2:216292809-216293022(-)$1	213	99	128	10.2731
eeeee[gggggggoooooogggggggeee	chr15:66792293-66792563(-)$1	270	0	29	11.7736
ffffff####ddddnnnnndddd22ffff	chr8:97243180-97243458(-)$1	278	110	139	10.8196
c!!dddd!!ddddmmmmdddddddd22cc	chr19:34663346-34663755(+)$1	409	302	331	10.4628
dd[eeeee[ddddoooooodddd]eeeee	chr8:17760428-17760681(-)$1	253	162	191	14.4113
ff!!ccc!!ddddnnnnndddd22ccc33	chr15:99465441-99465693(+)$1	252	160	189	12.3980
:::dddd!!ddddoooooodddd]dddd:	chr2:232326517-232326773(-)$1	256	34	63	12.1787
##ddddgggggggooooooggggggg]dd	chr2:198288432-198288643(-)$1	211	139	168	12.0551
fff[bb"""ddddoooooodddd333bb]	chr2:216256254-216256467(-)$1	213	27	56	15.8209
cbb[ccc[eeeeeooooooeeeee]ccc]	chr12:26811950-26812169(-)$1	219	139	168	12.6961
:eeeee####cccooooooccc22eeeee	chr22:50832351-50832607(+)$1	256	224	253	13.4835
####ccc"""cccooooooccc]ccc444	chr15:66793713-66793942(-)$1	229	129	158	14.8625
ee[a[ccca[cccooooooccc22a]ccc	chr21:27253839-27254092(-)$1	253	10	39	13.7435
fffffff[eeeeeooooooeeeee22fff	chr1:245023559-245023803(-)$1	244	159	188	11.8473
dd[ccc"""ddddrrrrrrrrrdddd22c	chr17:1675065-1675305(+)$1	240	6	35	10.2149
!!ccc"""eeeeeooooooeeeee333cc	chr7:152132779-152133146(-)$1	367	131	160	14.3459
b[eeeee!!ddddoooooodddd]eeeee	chr11:62297545-62297819(-)$1	274	135	164	15.3320
a[cccddddddddoooooodddd333ddd	chr3:41265916-41266172(+)$1	256	71	100	15.0596
c[eeeeea!!cccooooooccc22a]eee	chr2:54855213-54855446(+)$1	233	171	200	14.0383
cc[ccc"""ddddmmmmdddd333ccc22	chr11:129998925-129999172(+)$1	247	106	135	11.4049
!!ccc$$$$$cccooooooccc22ccc]d	chr6:144747368-144747626(+)$1	258	132	161	14.1737
f[dddd"""ddddoooooodddddddd33	chr3:184042725-184043002(+)$1	277	17	46	15.9756
[a[bb[gggggggooooooggggggg]bb	chr16:27518251-27518571(-)$1	320	228	257	11.6245
gggggggbb[cccooooooccc]bb]ggg	chr20:17599158-17599393(-)$1	235	149	178	11.8115
fffffdddd[cccoooooocccddddeee	chr7:91674321-91674605(+)$1	284	80	109	12.0141
eeeeeeeee[cccooooooccc]eeeee:	chr7:100780660-100780886(+)$1	226	173	202	11.3045
[a[bb####ddddoooooodddd55555b	chr2:168919924-168920180(-)$1	256	28	57	12.3608
"""bb[a[eeeeeooooooeeeee]a]bb	chr11:93470116-93470376(-)$1	260	29	58	12.4646
dddd!!cccddddoooooodddd]ccc]d	chr2:216299346-216299566(-)$1	220	165	194	14.5078
ff"""bb!!ddddoooooodddd22bb]f	chr3:139076532-139076902(-)$1	370	204	233	14.7322
####a!!ddddcccooooooccc]dddd2	chr17:65821701-65822026(+)$1	325	230	259	12.1259

#otherMatches

#Seq PSSM
GUCACCGGAUGUCAGCACAGACGCAUGGG	chr3:52841783-52842009(+)$1	226	113	142	14.6770
UUUUCUCAUUCAGCAUGGCCUGUAUGAGA	chr10:79796903-79797139(+)$1	236	35	64	13.1158
GAUGGGACGGACUUCCCCCAGCUGUGUCA	chr3:133474229-133474439(+)$1	210	18	47	11.7151
CUGCAUUUUUAAAAAAUUAUUUGUGAUGA	chr2:166769988-166770237(-)$1	249	177	206	15.6641
UUGUUCAAUGUCAAGACUCUGACUGAACG	chr14:39771230-39771473(+)$1	243	87	116	13.8171
UUGCCUGUAGCUGACCCCACAGUACCCUG	chr16:84129207-84129466(-)$1	259	46	75	15.6360
CCUUUCCAGGUUCUCAUGAACAGCGAGAA	chr20:30729197-30729437(+)$1	240	137	166	10.5682
UCAGCAAAGUGGGGAUAAUUCUAACAUGC	chr12:72030295-72030535(-)$1	240	0	29	15.0259
UAAGUAUACAUUAGAUAGAUAAUUACUUA	chr6:119569325-119569567(-)$1	242	203	232	15.9627
UCGGAAAGGGCUCUUCUUUGAGCAUGAUC	chr17:38318252-38318510(+)$1	258	94	123	13.7388
ACAUGGGUAUCAGAAAUACCUGAGCACCA	chr9:14859279-14859558(-)$1	279	14	43	12.1122
GUGCAGCAGGGCCUGGGUGGCCAGGCUCA	chr16:3900676-3900983(-)$1	307	170	199	11.1987
CUCUGGGAAGUGCGAAAGGGCACUGCCUU	chr20:3180900-3181108(-)$1	208	145	174	10.8243
AUAAUUUUCAGUCUAAUGAUUUCUAAUUU	chr5:52160702-52161016(+)$1	314	55	84	10.9259
UUGGAGCAACAGCGUGUUGGCUGGGCUCU	chr1:16893622-16893887(-)$1	265	174	203	13.7203
UUUGUGAUAUAUUUCUUACAGUGUACCAU	chr2:55791410-55791693(-)$1	283	39	68	11.1838
CCGACUCGGGCCCGAUGGAGGAGGAGGAG	chr1:245027152-245027426(-)$1	274	163	192	12.1844
AGGCUGCAGAGCCCAUUGGAGAGGCUGGA	chr19:57325301-57325548(-)$1	247	21	50	13.6229
CUGUGCAGACCACAUCGAGCGGUGAGGCA	chr2:216292809-216293022(-)$1	213	99	128	10.2731
UGUGUAUAAUGUUAAGUAAAAUGUUGAUA	chr15:66792293-66792563(-)$1	270	0	29	11.7736
CUUGAACCGUAUCUGAAAGAGGUUAUUCG	chr8:97243180-97243458(-)$1	278	110	139	10.8196
CACCGUAGCCCUUGCCAAAGGUACGCGGG	chr19:34663346-34663755(+)$1	409	302	331	10.4628
ccugggguugguggauauauaccuacucu	chr8:17760428-17760681(-)$1	253	162	191	14.4113
GGCUGAGAAGCUGGGCUGCAGCGCCUCCA	chr15:99465441-99465693(+)$1	252	160	189	12.3980
UUAUUCUCAAGGUCGUCAUACCUCAGAAG	chr2:232326517-232326773(-)$1	256	34	63	12.1787
AGUUAUUUUUUUGAGAGAGCAAGAAAUAU	chr2:198288432-198288643(-)$1	211	139	168	12.0551
CCUGGUGCGUUACUCACCUGUGAAAAAUG	chr2:216256254-216256467(-)$1	213	27	56	15.8209
UGCGGUAUUCUUUUCUAGUGGAGAUUGCG	chr12:26811950-26812169(-)$1	219	139	168	12.6961
AGCUGUGACGGGCCAGUACGCCAGGCAGU	chr22:50832351-50832607(+)$1	256	224	253	13.4835
CAAAGGCAAAAUGAGAAACCGUCGCCGUA	chr15:66793713-66793942(-)$1	229	129	158	14.8625
GUUGACGCCGCUGUCACCCCAGAGGAGCG	chr21:27253839-27254092(-)$1	253	10	39	13.7435
AGAUGAAGGUAAAUGCAAUUUUAUGAuuu	chr1:245023559-245023803(-)$1	244	159	188	11.8473
AGCGCUAAACCAGAACCCGAGCCUGGCAG	chr17:1675065-1675305(+)$1	240	6	35	10.2149
GCUGCUGCUCCCGGGGCUGCGGGAAAUGC	chr7:152132779-152133146(-)$1	367	131	160	14.3459
UGGAUGUGAAGCUGCCCAAAGCUGACGUU	chr11:62297545-62297819(-)$1	274	135	164	15.3320
CUAAUGCUAAUACUGUUUCGUAUUUAUAG	chr3:41265916-41266172(+)$1	256	71	100	15.0596
AAGGUAAGGAUGGCCCAUUCCAAGCAUUA	chr2:54855213-54855446(+)$1	233	171	200	14.0383
UAUGCUGAAUGACCGCCGUCGGAUGGCUC	chr11:129998925-129999172(+)$1	247	106	135	11.4049
CAGACCACCAGGCCCUACAGCCAAGUCAA	chr6:144747368-144747626(+)$1	258	132	161	14.1737
CAAGUUUAUUGGAGAGUUGUUCAAACUGA	chr3:184042725-184043002(+)$1	277	17	46	15.9756
GUCUAUGCAGGAGGAGUCGCUUCUGCCUG	chr16:27518251-27518571(-)$1	320	228	257	11.6245
CCUGGUAGGUGGCCUCCAUGUCCCCAUGC	chr20:17599158-17599393(-)$1	235	149	178	11.8115
CAAUUGGUCGCCAUGUCCUUGGGAUUCUA	chr7:91674321-91674605(+)$1	284	80	109	12.0141
ACAUUUGCCUUUUGUUAAAAGAUGGUAAA	chr7:100780660-100780886(+)$1	226	173	202	11.3045
AGUGAUAUUGUGAUUUUAUUCAUUCCUUU	chr2:168919924-168920180(-)$1	256	28	57	12.3608
UGAAAGAAUCAUUGAAGCAAAUGAAUGUU	chr11:93470116-93470376(-)$1	260	29	58	12.4646
CCAUAGUUAGUAUCUUUUAAUACAUGAAG	chr2:216299346-216299566(-)$1	220	165	194	14.5078
UGCUUUCCAUUUACCUGACUAAACAGAUC	chr3:139076532-139076902(-)$1	370	204	233	14.7322
cCACGUCCGGACCCAUCGGGGGGCUCCGC	chr17:65821701-65822026(+)$1	325	230	259	12.1259

#DB
))).(((..((((......))))..)))(	chr3:52841783-52842009(+)$1	1	113	142	14.6770
(((((((((.(((......))).))))))	chr10:79796903-79797139(+)$1	1	35	64	13.1158
(.(((.((((.((......)))))).)))	chr3:133474229-133474439(+)$1	1	18	47	11.7151
((.((((..((((......)))).)))))	chr2:166769988-166770237(-)$1	1	177	206	15.6641
.((((((..((((......))))))))))	chr14:39771230-39771473(+)$1	1	87	116	13.8171
((((..(..((((......))))..)..)	chr16:84129207-84129466(-)$1	1	46	75	15.6360
))((((...((((....))))...))))(	chr20:30729197-30729437(+)$1	1	137	166	10.5682
..((((...((((......))))...)))	chr12:72030295-72030535(-)$1	1	0	29	15.0259
((((((...((((......))))))))))	chr6:119569325-119569567(-)$1	1	203	232	15.9627
(((((....((((......))))......	chr17:38318252-38318510(+)$1	1	94	123	13.7388
((((.(((.((((......))))..))).	chr9:14859279-14859558(-)$1	1	14	43	12.1122
.((.(((..((((.....))))..)))))	chr16:3900676-3900983(-)$1	1	170	199	11.1987
....(((.(((((......))))).))))	chr20:3180900-3181108(-)$1	1	145	174	10.8243
(.((((...((((....))))...)))).	chr5:52160702-52161016(+)$1	1	55	84	10.9259
..(((((..((((......)))).)))))	chr1:16893622-16893887(-)$1	1	174	203	13.7203
(..(((.((((((......)))))).)))	chr2:55791410-55791693(-)$1	1	39	68	11.1838
((..(((....((......))..)))..)	chr1:245027152-245027426(-)$1	1	163	192	12.1844
.(((((...(((((......).))))...	chr19:57325301-57325548(-)$1	1	21	50	13.6229
((((((..(((.(.....).)))...)))	chr2:216292809-216293022(-)$1	1	99	128	10.2731
(((((.(((((((......))))))))))	chr15:66792293-66792563(-)$1	1	0	29	11.7736
((((((....((((.....))))..))))	chr8:97243180-97243458(-)$1	1	110	139	10.8196
(..((((..((((....))))))))..))	chr19:34663346-34663755(+)$1	1	302	331	10.4628
((.(((((.((((......)))).)))))	chr8:17760428-17760681(-)$1	1	162	191	14.4113
((..(((..((((.....))))..)))..	chr15:99465441-99465693(+)$1	1	160	189	12.3980
...((((..((((......)))).)))).	chr2:232326517-232326773(-)$1	1	34	63	12.1787
..(((((((((((......))))))).))	chr2:198288432-198288643(-)$1	1	139	168	12.0551
(((.((...((((......))))...)).	chr2:216256254-216256467(-)$1	1	27	56	15.8209
(((.(((.(((((......))))).))).	chr12:26811950-26812169(-)$1	1	139	168	12.6961
.(((((....(((......)))..)))))	chr22:50832351-50832607(+)$1	1	224	253	13.4835
....(((...(((......))).)))...	chr15:66793713-66793942(-)$1	1	129	158	14.8625
((.(.((((.(((......)))..).)))	chr21:27253839-27254092(-)$1	1	10	39	13.7435
)((((((.(((((......)))))..)))	chr1:245023559-245023803(-)$1	1	159	188	11.8473
((.(((...((((.........))))..)	chr17:1675065-1675305(+)$1	1	6	35	10.2149
..(((...(((((......)))))...))	chr7:152132779-152133146(-)$1	1	131	160	14.3459
(.(((((..((((......)))).)))))	chr11:62297545-62297819(-)$1	1	135	164	15.3320
(.(((((((((((......))))...)))	chr3:41265916-41266172(+)$1	1	71	100	15.0596
(.((((((..(((......)))..).)))	chr2:54855213-54855446(+)$1	1	171	200	14.0383
((.(((...((((....))))...)))..	chr11:129998925-129999172(+)$1	1	106	135	11.4049
..(((.....(((......)))..))).)	chr6:144747368-144747626(+)$1	1	132	161	14.1737
(.((((...((((......))))))))..	chr3:184042725-184043002(+)$1	1	17	46	15.9756
.(.((.(((((((......))))))).))	chr16:27518251-27518571(-)$1	1	228	257	11.6245
(((((((((.(((......))).)).)))	chr20:17599158-17599393(-)$1	1	149	178	11.8115
)))))((((.(((......)))))))(((	chr7:91674321-91674605(+)$1	1	80	109	12.0141
))))(((((.(((......))).))))).	chr7:100780660-100780886(+)$1	1	173	202	11.3045
.(.((....((((......)))).....)	chr2:168919924-168920180(-)$1	1	28	57	12.3608
...((.(.(((((......))))).).))	chr11:93470116-93470376(-)$1	1	29	58	12.4646
((((..(((((((......)))).))).)	chr2:216299346-216299566(-)$1	1	165	194	14.5078
((...((..((((......))))..)).)	chr3:139076532-139076902(-)$1	1	204	233	14.7322
....(..(((((((......))).)))).	chr17:65821701-65822026(+)$1	1	230	259	12.1259

#PSSM
f : 0.16	d : 0.12	c : 0.10	e : 0.08	: : 0.08	g : 0.08	! : 0.06	# : 0.06	i : 0.04	( : 0.04	b : 0.04	[ : 0.04	% : 0.02	F : 0.02	a : 0.02	" : 0.02	
f : 0.14	d : 0.12	[ : 0.12	e : 0.10	g : 0.08	! : 0.08	: : 0.06	# : 0.06	i : 0.04	c : 0.04	b : 0.04	a : 0.04	F : 0.02	( : 0.02	" : 0.02	
d : 0.16	[ : 0.14	e : 0.14	f : 0.10	c : 0.08	g : 0.08	! : 0.08	b : 0.04	# : 0.04	" : 0.04	i : 0.02	F : 0.02	( : 0.02	: : 0.02	
d : 0.20	e : 0.16	c : 0.14	f : 0.08	g : 0.08	[ : 0.06	b : 0.06	! : 0.04	# : 0.04	: : 0.02	i : 0.02	F : 0.02	( : 0.02	a : 0.02	" : 0.02	
c : 0.28	d : 0.16	e : 0.16	f : 0.08	g : 0.08	b : 0.08	! : 0.04	i : 0.02	: : 0.02	[ : 0.02	" : 0.02	a : 0.02	
c : 0.24	d : 0.20	e : 0.14	[ : 0.08	f : 0.06	! : 0.06	g : 0.06	# : 0.04	b : 0.04	i : 0.02	" : 0.02	$ : 0.02	
c : 0.20	" : 0.20	d : 0.12	e : 0.10	# : 0.08	g : 0.08	f : 0.04	a : 0.04	! : 0.04	i : 0.02	[ : 0.02	$ : 0.02	b : 0.02	
! : 0.24	" : 0.22	# : 0.10	d : 0.08	[ : 0.08	c : 0.06	g : 0.06	e : 0.04	i : 0.02	f : 0.02	a : 0.02	$ : 0.02	b : 0.02	
! : 0.24	" : 0.20	e : 0.12	# : 0.10	d : 0.08	g : 0.06	[ : 0.04	c : 0.04	i : 0.02	f : 0.02	a : 0.02	$ : 0.02	b : 0.02	
d : 0.57	[ : 0.10	e : 0.10	# : 0.06	g : 0.06	f : 0.02	c : 0.02	" : 0.02	! : 0.02	$ : 0.02	
d : 0.57	c : 0.20	e : 0.10	g : 0.06	[ : 0.02	f : 0.02	# : 0.02	
d : 0.55	c : 0.20	e : 0.10	g : 0.06	b : 0.04	f : 0.02	[ : 0.02	
d : 0.55	c : 0.20	e : 0.10	g : 0.06	b : 0.04	f : 0.02	a : 0.02	
o : 0.77	m : 0.08	n : 0.06	a : 0.02	d : 0.02	r : 0.02	c : 0.02	
o : 0.81	m : 0.08	n : 0.08	r : 0.02	
o : 0.81	m : 0.08	n : 0.08	r : 0.02	
o : 0.81	m : 0.08	n : 0.08	r : 0.02	
o : 0.81	d : 0.08	n : 0.08	r : 0.02	
o : 0.81	d : 0.12	a : 0.02	n : 0.02	r : 0.02	
d : 0.51	c : 0.18	e : 0.10	g : 0.06	b : 0.04	o : 0.04	f : 0.02	] : 0.02	r : 0.02	
d : 0.51	c : 0.22	e : 0.10	g : 0.06	b : 0.04	f : 0.02	a : 0.02	r : 0.02	
d : 0.46	c : 0.22	e : 0.10	3 : 0.06	g : 0.06	f : 0.02	2 : 0.02	] : 0.02	r : 0.02	
d : 0.48	2 : 0.14	e : 0.10	] : 0.08	3 : 0.06	g : 0.06	c : 0.04	f : 0.02	
2 : 0.22	] : 0.14	3 : 0.14	d : 0.12	e : 0.12	g : 0.08	f : 0.04	c : 0.04	i : 0.02	6 : 0.02	b : 0.02	5 : 0.02	
d : 0.22	c : 0.14	2 : 0.12	3 : 0.10	e : 0.10	g : 0.08	] : 0.06	f : 0.04	a : 0.04	i : 0.02	6 : 0.02	b : 0.02	5 : 0.02	
c : 0.22	d : 0.18	] : 0.10	3 : 0.10	e : 0.10	g : 0.08	f : 0.04	a : 0.04	2 : 0.04	i : 0.02	6 : 0.02	5 : 0.02	b : 0.02	
c : 0.24	d : 0.16	e : 0.16	2 : 0.08	f : 0.06	g : 0.06	] : 0.06	3 : 0.04	b : 0.04	i : 0.02	6 : 0.02	4 : 0.02	5 : 0.02	
c : 0.18	d : 0.16	e : 0.16	2 : 0.08	b : 0.08	f : 0.06	g : 0.06	3 : 0.06	] : 0.06	i : 0.02	6 : 0.02	4 : 0.02	5 : 0.02	
d : 0.16	c : 0.14	e : 0.14	f : 0.08	b : 0.08	g : 0.06	: : 0.06	] : 0.06	3 : 0.06	i : 0.04	2 : 0.04	F : 0.02	6 : 0.02	4 : 0.02	

#score	636.0126343771802
#seq	49
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF865AZP_SRSF7_CDS_m1_run2.txt

#BEAR
cccffffffooooooffffff333cc	chr11:124492743-124493223(+)$1	480	210	236	11.1196
e[dddd[ccclllccc]dddd]eeee	chr12:104341309-104341527(+)$1	218	141	167	8.1849
ffff[ddddoooooodddd333ffff	chr6:158475895-158476166(+)$1	271	27	53	10.7796
c[ccc[cccooooooccccccccccc	chr12:57499150-57499421(-)$1	271	48	74	13.3417
iiiii[cccnnnnnccciiiiiiiii	chr9:117062804-117063053(+)$1	249	31	57	10.6747
c[ccc[cccccclllccc22ccc]cc	chr2:54197690-54197988(-)$1	298	106	132	10.0044
bb####cccooooooccc333bb:ff	chr6:144837848-144838123(+)$1	275	32	58	11.2364
$$a[eeeeeooooooeeeeea]ccca	chr6:158480200-158480483(+)$1	283	172	198	10.8787
f[==========lll==========f	chr20:42086987-42087244(+)$1	257	185	211	9.8022
a[gggggggooooooggggggg]a:b	chr20:39791916-39792143(+)$1	227	3	29	10.5496
==####cccpppppppccc333====	chr14:70235844-70236083(+)$1	239	207	233	8.1391
"""aeeeeennnnneeeee]a333==	chr17:79969351-79969576(+)$1	225	182	208	9.4068
ggggeeeeeooooooeeeee333ggg	chr19:15763262-15763536(+)$1	274	56	82	11.2389
ff[dddd[aooooooa]ddddfffff	chr22:38902004-38902249(-)$1	245	125	151	9.9491
a[ccc[cccnnnnnccc]ccc]a22f	chr20:61594922-61595133(+)$1	211	82	108	11.0924
""ccc!!cccooooooccc333ccc3	chr3:183882549-183882851(+)$1	302	31	57	12.8043
c[a####ccclllccc4444a]ccc:	chr12:132414477-132414768(+)$1	291	222	248	9.3561
fffff[cccnnnnnccc22ffffff3	chr16:8891663-8891920(+)$1	257	35	61	9.1642
bb[ffffffooooooffffff]bb]c	chr1:146684699-146684996(-)$1	297	64	90	10.0743
ggggg[cccoooooocccggggggge	chr20:3194531-3194794(+)$1	263	119	145	12.7419
dddd!!cccoooooocccddddhhhh	chr20:39791787-39792024(+)$1	237	176	202	10.9645
""gggggggooooooggggggg333f	chr6:132199584-132199855(+)$1	271	120	146	12.2214
ggggg[cccooooooccc]ggggggg	chr17:79969318-79969551(+)$1	233	200	226	12.8602
dd[bb[cccooooooccc]bbdddd:	chr17:73872319-73872583(-)$1	264	115	141	9.9734
==========mmmm==========22	chr20:17930883-17931147(-)$1	264	28	54	8.7894
##ccc!!ccclllccc22ccc333cc	chr16:75270541-75270835(-)$1	294	64	90	10.2267
fff"""cccooooooccc22ffffff	chr3:119217535-119217842(+)$1	307	197	223	12.0163
iiiiiiiiiooooooiiiiiiiii22	chr3:149374545-149374849(-)$1	304	232	258	11.5896
eeeffffffooooooffffff333ee	chr17:79954214-79954484(+)$1	270	140	166	10.4314
####eeeeeooooooeeeeedddd]i	chr17:7127062-7127296(+)$1	234	61	87	10.3479
ffff"""cccnnnnnccc22ffffff	chr3:49051298-49051599(+)$1	301	178	204	9.1790
""bb!!cccrrrrrrrrrccc]bb22	chr20:31608086-31608305(+)$1	219	139	165	8.9230
ddd[eeeeeooooooeeeee]dddde	chr2:70457789-70458095(-)$1	306	141	167	9.3576
c[ccc[cccccclllccc22ccc]cc	chr2:54197788-54198046(-)$1	258	164	190	10.0044
dddd!!cccoooooocccdddd22a2	chr2:233740584-233740872(+)$1	288	213	239	11.4866
bb[a[ddddoooooodddd]a]bbbb	chr6:31914702-31914960(+)$1	258	211	237	9.9717
c[ccc[cccoooooocccccc]ccc]	chr1:20811675-20811970(-)$1	295	84	110	13.7703
ccc[dddd[aooooooadddd]ccc:	chr2:27720127-27720366(+)$1	239	37	63	9.4936
c"""ddddrrrrrrrrrdddd333cc	chr11:6503271-6503534(+)$1	263	24	50	8.6950
a[ccc[cccnnnnnccc]ccc]a22f	chr20:61594882-61595122(+)$1	240	122	148	11.0924
eeccc[cccmmmmccc]ccc4444ee	chr20:34220613-34220899(-)$1	286	232	258	8.7531
eeeee[ccclllccc]eeeee]ccce	chr11:64681220-64681494(-)$1	274	105	131	8.2894
cdddd!!cccnnnnnccc22dddd]c	chr17:73975010-73975276(-)$1	266	126	152	9.0208
b!!bb[cccnnnnnccc]bb22bb]e	chr1:12677133-12677386(-)$1	253	213	239	9.0783

#otherMatches

#Seq PSSM
UGGGGCCCCCGUAGCGGGGCUGGACC	chr11:124492743-124493223(+)$1	480	210	236	11.1196
CACCAUUUGGAUCCUGUGUGGAGAGG	chr12:104341309-104341527(+)$1	218	141	167	8.1849
GGAGAAUGGGAAAAACCAUGGCCUCC	chr6:158475895-158476166(+)$1	271	27	53	10.7796
CCUGGUGGACAUUUAUUCCCAGCUAC	chr12:57499150-57499421(-)$1	271	48	74	13.3417
GAGGGAGCUGUGGGGGCCCUUUACCC	chr9:117062804-117063053(+)$1	249	31	57	10.6747
gagccgggcgggcgucccgagccggg	chr2:54197690-54197988(-)$1	298	106	132	10.0044
GUUGAUAGGAAGUGACCUUAUGCAUU	chr6:144837848-144838123(+)$1	275	32	58	11.2364
CAGAGCCUUCAAGGUAAGGCCAGGCU	chr6:158480200-158480483(+)$1	283	172	198	10.8787
CGCGCCCUUGGGGACCCUGGGGGCGG	chr20:42086987-42087244(+)$1	257	185	211	9.8022
GGCUGGGCUGACAUUGGCCCAGGCUG	chr20:39791916-39792143(+)$1	227	3	29	10.5496
AAAGUAGUUUUAAAUUAAUGGAUUUA	chr14:70235844-70236083(+)$1	239	207	233	8.1391
GCUGUGGGCACACCGCCCGUCCCAGC	chr17:79969351-79969576(+)$1	225	182	208	9.4068
CUCAGAGGUACUGUGACUUUUUAUGG	chr19:15763262-15763536(+)$1	274	56	82	11.2389
CUGCCGCCGCCCCAACAGCGGAGGCG	chr22:38902004-38902249(-)$1	245	125	151	9.9491
CUUCGAGGAGACCUUCCCCGACGCCA	chr20:61594922-61595133(+)$1	211	82	108	11.0924
CAGCAACCCGGCUAAAUGGAACUGCG	chr3:183882549-183882851(+)$1	302	31	57	12.8043
GGCAGGUCCCGCGGGGUUUAGGUGCA	chr12:132414477-132414768(+)$1	291	222	248	9.3561
GUGCCAACGUGUCUUGUAAGGUGCGG	chr16:8891663-8891920(+)$1	257	35	61	9.1642
GUCAUGGUUUGCACUGGCCAUCACAC	chr1:146684699-146684996(-)$1	297	64	90	10.0743
UGAGGACACUUGUCUGUGCUUCAAUG	chr20:3194531-3194794(+)$1	263	119	145	12.7419
GGCUCAUCCCUGACUGGAGGCUUCUC	chr20:39791787-39792024(+)$1	237	176	202	10.9645
AACACAGUUCAAUCUGACUGUGGCAG	chr6:132199584-132199855(+)$1	271	120	146	12.2214
GCUCGGGGCCUUGGUGCUGUGGGCAC	chr17:79969318-79969551(+)$1	233	200	226	12.8602
GAAGCUGCCAUGCUAGGCCGCUCCCA	chr17:73872319-73872583(-)$1	264	115	141	9.9734
UUUUUAUAUUGAUAAAUGUAAAAGGC	chr20:17930883-17931147(-)$1	264	28	54	8.7894
AUGCCAGGGCAAUGCCAGGGCCAGGC	chr16:75270541-75270835(-)$1	294	64	90	10.2267
GGAAUCUGGAUGGGACCGCCUCCGGG	chr3:119217535-119217842(+)$1	307	197	223	12.0163
ACGCGCGCguguguucgugugugugu	chr3:149374545-149374849(-)$1	304	232	258	11.5896
CGUCGGCUGGCCAGGCAGCCGCCAGC	chr17:79954214-79954484(+)$1	270	140	166	10.4314
GUCCCUAGGAGGCAGCCUGGAAGGUG	chr17:7127062-7127296(+)$1	234	61	87	10.3479
CCCACCGGCUAGAUGAGUAUUGGGAC	chr3:49051298-49051599(+)$1	301	178	204	9.1790
CAGCCUCAGUGUGUUCUUCUGUGCCA	chr20:31608086-31608305(+)$1	219	139	165	8.9230
GUUUCAUGAGCAUCGUCAUGCAGCUG	chr2:70457789-70458095(-)$1	306	141	167	9.3576
gagccgggcgggcgucccgagccggg	chr2:54197788-54198046(-)$1	258	164	190	10.0044
CAGCACCGCgcaggagcggcuggacc	chr2:233740584-233740872(+)$1	288	213	239	11.4866
CACCUGCCAAGUGAAUGGCCGAUGGA	chr6:31914702-31914960(+)$1	258	211	237	9.9717
ccccggACGCGACCAUGUCGGAGGUG	chr1:20811675-20811970(-)$1	295	84	110	13.7703
CAGGAUCUAGACAAAGCAGAUGCUGA	chr2:27720127-27720366(+)$1	239	37	63	9.4936
GCUGGGAAGCUGAUCCAUUCCAACCA	chr11:6503271-6503534(+)$1	263	24	50	8.6950
CUUCGAGGAGACCUUCCCCGACGCCA	chr20:61594882-61595122(+)$1	240	122	148	11.0924
UUUUGGGGUGGAGGCUGUGACUGUGA	chr20:34220613-34220899(-)$1	286	232	258	8.7531
GGAGGAUCAAAGUGACCUUCCUGGAC	chr11:64681220-64681494(-)$1	274	105	131	8.2894
ACCCGGACCUGCGCAGGGAGCGGGAU	chr17:73975010-73975276(-)$1	266	126	152	9.0208
CGCGGCGCCAGAAAGGUACCAGGCAC	chr1:12677133-12677386(-)$1	253	213	239	9.0783

#DB
(((((((((......))))))...))	chr11:124492743-124493223(+)$1	1	210	236	11.1196
(.((((.(((...))).)))).))))	chr12:104341309-104341527(+)$1	1	141	167	8.1849
((((.((((......))))...))))	chr6:158475895-158476166(+)$1	1	27	53	10.7796
(.(((.(((......)))))))))))	chr12:57499150-57499421(-)$1	1	48	74	13.3417
(((((.(((.....))))))))))))	chr9:117062804-117063053(+)$1	1	31	57	10.6747
(.(((.((((((...)))..))).))	chr2:54197690-54197988(-)$1	1	106	132	10.0044
((....(((......)))...)).((	chr6:144837848-144838123(+)$1	1	32	58	11.2364
..(.(((((......)))))).))))	chr6:158480200-158480483(+)$1	1	172	198	10.8787
(.((((((((((...)))))))))))	chr20:42086987-42087244(+)$1	1	185	211	9.8022
(.(((((((......))))))).).(	chr20:39791916-39792143(+)$1	1	3	29	10.5496
((....(((.......)))...))))	chr14:70235844-70236083(+)$1	1	207	233	8.1391
...((((((.....))))).)...))	chr17:79969351-79969576(+)$1	1	182	208	9.4068
(((((((((......)))))...)))	chr19:15763262-15763536(+)$1	1	56	82	11.2389
((.((((.(......).)))))))))	chr22:38902004-38902249(-)$1	1	125	151	9.9491
(.(((.(((.....))).))).)..)	chr20:61594922-61595133(+)$1	1	82	108	11.0924
..(((..(((......)))...))).	chr3:183882549-183882851(+)$1	1	31	57	12.8043
(.(....(((...)))....).))).	chr12:132414477-132414768(+)$1	1	222	248	9.3561
(((((.(((.....)))..)))))).	chr16:8891663-8891920(+)$1	1	35	61	9.1642
((.((((((......)))))).)).)	chr1:146684699-146684996(-)$1	1	64	90	10.0743
(((((.(((......))))))))))(	chr20:3194531-3194794(+)$1	1	119	145	12.7419
((((..(((......)))))))))))	chr20:39791787-39792024(+)$1	1	176	202	10.9645
..(((((((......)))))))...)	chr6:132199584-132199855(+)$1	1	120	146	12.2214
(((((.(((......))).)))))))	chr17:79969318-79969551(+)$1	1	200	226	12.8602
((.((.(((......))).)))))).	chr17:73872319-73872583(-)$1	1	115	141	9.9734
((((((((((....))))))))))..	chr20:17930883-17931147(-)$1	1	28	54	8.7894
..(((..(((...)))..)))...))	chr16:75270541-75270835(-)$1	1	64	90	10.2267
(((...(((......)))..))))))	chr3:119217535-119217842(+)$1	1	197	223	12.0163
(((((((((......)))))))))..	chr3:149374545-149374849(-)$1	1	232	258	11.5896
(((((((((......))))))...))	chr17:79954214-79954484(+)$1	1	140	166	10.4314
....(((((......))))))))).)	chr17:7127062-7127296(+)$1	1	61	87	10.3479
((((...(((.....)))..))))))	chr3:49051298-49051599(+)$1	1	178	204	9.1790
..((..(((.........))).))..	chr20:31608086-31608305(+)$1	1	139	165	8.9230
(((.(((((......))))).))))(	chr2:70457789-70458095(-)$1	1	141	167	9.3576
(.(((.((((((...)))..))).))	chr2:54197788-54198046(-)$1	1	164	190	10.0044
((((..(((......)))))))..).	chr2:233740584-233740872(+)$1	1	213	239	11.4866
((.(.((((......)))).).))))	chr6:31914702-31914960(+)$1	1	211	237	9.9717
(.(((.(((......)))))).))).	chr1:20811675-20811970(-)$1	1	84	110	13.7703
(((.((((.(......))))).))).	chr2:27720127-27720366(+)$1	1	37	63	9.4936
(...((((.........))))...))	chr11:6503271-6503534(+)$1	1	24	50	8.6950
(.(((.(((.....))).))).)..)	chr20:61594882-61595122(+)$1	1	122	148	11.0924
(((((.(((....))).)))....))	chr20:34220613-34220899(-)$1	1	232	258	8.7531
(((((.(((...))).))))).))))	chr11:64681220-64681494(-)$1	1	105	131	8.2894
(((((..(((.....)))..)))).)	chr17:73975010-73975276(-)$1	1	126	152	9.0208
(..((.(((.....))).))..)).)	chr1:12677133-12677386(-)$1	1	213	239	9.0783

#PSSM
c : 0.20	f : 0.13	e : 0.09	b : 0.09	" : 0.09	d : 0.09	a : 0.06	g : 0.06	i : 0.04	= : 0.04	# : 0.04	$ : 0.02	
[ : 0.22	f : 0.11	" : 0.11	d : 0.11	b : 0.06	g : 0.06	e : 0.06	c : 0.04	i : 0.04	= : 0.04	# : 0.04	$ : 0.02	! : 0.02	
c : 0.25	d : 0.11	g : 0.11	f : 0.09	[ : 0.09	# : 0.06	i : 0.04	a : 0.04	= : 0.04	" : 0.04	e : 0.04	b : 0.02	! : 0.02	
c : 0.20	f : 0.13	d : 0.11	g : 0.11	# : 0.09	[ : 0.06	b : 0.06	i : 0.04	= : 0.04	a : 0.04	" : 0.04	e : 0.02	
c : 0.20	e : 0.13	d : 0.11	f : 0.09	g : 0.09	# : 0.06	! : 0.06	[ : 0.04	i : 0.04	= : 0.04	b : 0.04	" : 0.04	
[ : 0.31	d : 0.13	! : 0.13	e : 0.11	f : 0.06	# : 0.06	= : 0.04	g : 0.04	" : 0.04	i : 0.02	
c : 0.45	d : 0.11	e : 0.11	f : 0.06	! : 0.06	= : 0.04	g : 0.04	[ : 0.02	# : 0.02	i : 0.02	" : 0.02	
c : 0.59	e : 0.11	d : 0.09	f : 0.06	= : 0.04	g : 0.04	[ : 0.02	i : 0.02	
c : 0.59	e : 0.11	f : 0.06	d : 0.04	= : 0.04	g : 0.04	a : 0.02	i : 0.02	[ : 0.02	r : 0.02	
o : 0.49	c : 0.18	n : 0.13	= : 0.04	r : 0.04	p : 0.02	a : 0.02	m : 0.02	l : 0.02	
o : 0.54	n : 0.18	l : 0.09	c : 0.04	m : 0.04	r : 0.04	= : 0.02	p : 0.02	
o : 0.54	n : 0.18	l : 0.09	c : 0.04	m : 0.04	r : 0.04	= : 0.02	p : 0.02	
o : 0.54	n : 0.18	l : 0.13	m : 0.04	r : 0.04	p : 0.02	c : 0.02	
o : 0.54	n : 0.18	c : 0.11	l : 0.06	r : 0.04	p : 0.02	m : 0.02	
o : 0.54	c : 0.22	l : 0.06	n : 0.04	r : 0.04	p : 0.02	e : 0.02	= : 0.02	
c : 0.49	e : 0.11	f : 0.06	d : 0.04	= : 0.04	g : 0.04	o : 0.04	r : 0.04	p : 0.02	a : 0.02	i : 0.02	] : 0.02	
c : 0.45	e : 0.13	f : 0.06	] : 0.06	d : 0.04	= : 0.04	g : 0.04	r : 0.04	4 : 0.02	2 : 0.02	i : 0.02	a : 0.02	
c : 0.36	d : 0.13	e : 0.13	f : 0.06	] : 0.06	i : 0.04	= : 0.04	g : 0.04	2 : 0.04	4 : 0.02	r : 0.02	
c : 0.20	d : 0.18	2 : 0.13	e : 0.13	f : 0.06	g : 0.06	i : 0.04	= : 0.04	] : 0.04	3 : 0.02	4 : 0.02	b : 0.02	
c : 0.15	d : 0.13	2 : 0.11	e : 0.11	f : 0.09	3 : 0.09	g : 0.09	i : 0.04	= : 0.04	] : 0.04	b : 0.04	4 : 0.02	
d : 0.18	c : 0.18	f : 0.13	3 : 0.11	a : 0.09	g : 0.09	i : 0.04	= : 0.04	b : 0.02	] : 0.02	4 : 0.02	e : 0.02	2 : 0.02	
] : 0.25	3 : 0.20	d : 0.13	g : 0.09	f : 0.09	c : 0.06	i : 0.04	= : 0.04	b : 0.02	4 : 0.02	2 : 0.02	
c : 0.20	3 : 0.15	f : 0.11	b : 0.11	d : 0.09	= : 0.06	i : 0.04	a : 0.04	g : 0.04	e : 0.02	] : 0.02	h : 0.02	2 : 0.02	4 : 0.02	
c : 0.15	3 : 0.13	f : 0.11	b : 0.09	d : 0.09	= : 0.06	g : 0.06	2 : 0.06	i : 0.04	] : 0.04	e : 0.02	: : 0.02	a : 0.02	h : 0.02	4 : 0.02	
c : 0.27	f : 0.13	2 : 0.11	] : 0.09	e : 0.06	= : 0.06	g : 0.06	d : 0.04	i : 0.02	: : 0.02	h : 0.02	3 : 0.02	a : 0.02	b : 0.02	
f : 0.20	c : 0.18	e : 0.15	2 : 0.09	: : 0.06	i : 0.04	b : 0.04	= : 0.04	g : 0.04	3 : 0.04	a : 0.02	h : 0.02	] : 0.02	

#score	457.0773289291864
#seq	44
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_CDS_m3_run2.txt

#BEAR
bbcccqqqqqqqqccc]	chr19:1581150-1581368(-)$1	218	116	133	13.0658
#ddddqqqqqqqqdddd	chr16:31501541-31501787(-)$1	246	17	34	14.0302
eeeeaqqqqqqqqa]ee	chrX:48761790-48762082(-)$1	292	131	148	13.6541
dddbbqqqqqqqqbb22	chr19:55998502-55998798(+)$1	296	94	111	12.9910
dd[bbqqqqqqqqbb]d	chr4:2930132-2930392(+)$1	260	83	100	13.3177
eeeeeqqqqqqqqeeee	chr20:61919628-61919960(+)$1	332	78	95	13.8399
[ddddqqqqqqqqdddd	chr17:80197179-80197428(+)$1	249	191	208	14.1320
c[cccqqqqqqqqccc]	chr20:61598744-61599040(+)$1	296	85	102	13.6720
a[cccqqqqqqqqccc]	chr5:176524512-176524797(+)$1	285	200	217	13.6996
[a[bbqqqqqqqqbb]a	chr17:79826501-79826765(-)$1	264	67	84	13.1696
eeeeeqqqqqqqqeeee	chr19:8438881-8439199(+)$1	318	71	88	13.8399
dd[bbqqqqqqqqbbdd	chr17:1657516-1657758(+)$1	242	30	47	13.4130
"""bbqqqqqqqqbb22	chr3:52027669-52027940(-)$1	271	231	248	12.8269
eeeeeqqqqqqqqeeee	chr16:1496178-1496430(-)$1	252	154	171	13.8399
[ddddqqqqqqqqdddd	chr19:11033680-11033954(-)$1	274	185	202	14.1320
eeeeeqqqqqqqqeeee	chr2:242757797-242758060(+)$1	263	42	59	13.8399
[ddddqqqqqqqqdddd	chr14:20926387-20926703(-)$1	316	12	29	14.1320
c[cccqqqqqqqqccc3	chr21:45879744-45879976(+)$1	232	186	203	13.6874
fddddqqqqqqqqdddd	chr1:1374801-1375104(+)$1	303	226	243	13.9219
$$cccqqqqqqqqccc5	chr16:66965918-66966212(-)$1	294	125	142	12.3556
"""bbqqqqqqqqbb44	chr19:58906008-58906267(+)$1	259	165	182	13.1041
ff[bbqqqqqqqqbb22	chr16:28847591-28847984(+)$1	393	40	57	12.7497
""cccqqqqqqqqccc2	chr19:3121240-3121494(+)$1	254	83	100	13.5221
:ddddqqqqqqqqdddd	chr19:39923801-39924062(-)$1	261	156	173	13.1908
eddddqqqqqqqqdddd	chr19:55964454-55964798(-)$1	344	64	81	14.0591
eeeeeqqqqqqqqeeee	chr17:79918554-79918788(-)$1	234	175	192	13.8399
iiiiiqqqqqqqqiiii	chr19:1010546-1010815(-)$1	269	108	125	13.0924
fffffqqqqqqqqffff	chr2:242511715-242511969(+)$1	254	17	34	12.4824
cccccqqqqqqqqccc3	chr6:33240303-33240527(+)$1	224	163	180	13.5920
ccc[aqqqqqqqqa]cc	chr17:80197156-80197379(+)$1	223	163	180	13.0710
[ddddqqqqqqqqdddd	chr17:74077260-74077517(-)$1	257	139	156	14.1320
:ddddqqqqqqqqdddd	chr21:46934720-46935044(-)$1	324	17	34	13.1908
eeeeeqqqqqqqqeeee	chr16:1496098-1496378(-)$1	280	102	119	13.8399
[ddddqqqqqqqqdddd	chr11:63743603-63743867(+)$1	264	46	63	14.1320
eeeeeqqqqqqqqeeee	chr10:102744142-102744384(+)$1	242	30	47	13.8399
fffffqqqqqqqqffff	chr22:39917544-39917774(+)$1	230	145	162	12.4824
:ddddqqqqqqqqdddd	chr22:30824403-30824810(+)$1	407	387	404	13.1908
eeeeeqqqqqqqqeeee	chr1:150238391-150238660(-)$1	269	95	112	13.8399
dd[bbqqqqqqqqbb]d	chr17:46137199-46137512(+)$1	313	71	88	13.3177
gggbbqqqqqqqqbb22	chr18:2920213-2920482(-)$1	269	108	125	12.8375
gggggqqqqqqqqgggg	chr3:47894174-47894434(-)$1	260	224	241	13.0855
g[cccqqqqqqqqccc]	chr21:46934916-46935179(-)$1	263	134	151	13.6904
eeeeeqqqqqqqqeeee	chr17:80196510-80196756(+)$1	246	191	208	13.8399
ddd[aqqqqqqqqa]dd	chr11:60703187-60703542(+)$1	355	52	69	13.4650
:ddddqqqqqqqqdddd	chr16:74485845-74486141(-)$1	296	97	114	13.1908
ee[bbqqqqqqqqbbee	chr1:6694594-6694867(-)$1	273	151	168	13.4951
eeeeeqqqqqqqqeeee	chr1:183521966-183522233(+)$1	267	118	135	13.8399
[ddddqqqqqqqqdddd	chr11:64532871-64533151(-)$1	280	132	149	14.1320
fffffqqqqqqqqffff	chr22:42981107-42981372(-)$1	265	191	208	12.4824
:ddddqqqqqqqqdddd	chr16:31501732-31501981(-)$1	249	211	228	13.1908
eeeeeqqqqqqqqeeee	chr9:130169501-130169817(+)$1	316	169	186	13.8399
d!!bbqqqqqqqqbb]d	chr9:19380089-19380314(-)$1	225	169	186	13.2628
:ddddqqqqqqqqdddd	chr17:73841807-73842086(-)$1	279	131	148	13.1908
fffffqqqqqqqqffff	chr17:79782119-79782366(-)$1	247	52	69	12.4824
e[cccqqqqqqqqccc]	chr17:7491252-7491557(+)$1	305	175	192	13.7533
eeeeeqqqqqqqqeeee	chr19:55998112-55998386(+)$1	274	56	73	13.8399

#otherMatches

#Seq PSSM
CACGGAUGAGACGCUGC	chr19:1581150-1581368(-)$1	218	116	133	13.0658
CGCUGAUGUCCUCCAGC	chr16:31501541-31501787(-)$1	246	17	34	14.0302
UGGGCAUCUGCAGGACC	chrX:48761790-48762082(-)$1	292	131	148	13.6541
UCAGCUCCUGUCUGCAC	chr19:55998502-55998798(+)$1	296	94	111	12.9910
UUCUGAAGAAGAGCAAG	chr4:2930132-2930392(+)$1	260	83	100	13.3177
GCUGGAAAUGAUACUGG	chr20:61919628-61919960(+)$1	332	78	95	13.8399
GAGUAUGUGGUUUUGCU	chr17:80197179-80197428(+)$1	249	191	208	14.1320
GCUCUACCCAUGAGGAC	chr20:61598744-61599040(+)$1	296	85	102	13.6720
GGCCUUGGGCCUUGGGG	chr5:176524512-176524797(+)$1	285	200	217	13.6996
UGUGUCCCCCCCAGCCC	chr17:79826501-79826765(-)$1	264	67	84	13.1696
GCCUCCUGAGAUCGAGG	chr19:8438881-8439199(+)$1	318	71	88	13.8399
AUUGCCAUGUCCCGCAU	chr17:1657516-1657758(+)$1	242	30	47	13.4130
UGGGCUACCAUCUGCAU	chr3:52027669-52027940(-)$1	271	231	248	12.8269
GUGAGACAGAGCCCUUG	chr16:1496178-1496430(-)$1	252	154	171	13.8399
UUCUGCUACUUUCCAGA	chr19:11033680-11033954(-)$1	274	185	202	14.1320
ACUCCUCGGUCCUGGAG	chr2:242757797-242758060(+)$1	263	42	59	13.8399
GCCCCUCCCUGGUGGGG	chr14:20926387-20926703(-)$1	316	12	29	14.1320
AAAGCUCCUUCAUGCUC	chr21:45879744-45879976(+)$1	232	186	203	13.6874
UGGUGACCGUGACCGCC	chr1:1374801-1375104(+)$1	303	226	243	13.9219
CAGCCUGCAUACUGGUA	chr16:66965918-66966212(-)$1	294	125	142	12.3556
UGUGCUGUUGUCUGUCU	chr19:58906008-58906267(+)$1	259	165	182	13.1041
CACCUGUCUGUGAAGUA	chr16:28847591-28847984(+)$1	393	40	57	12.7497
AAUGGUUUUUAUUUCAC	chr19:3121240-3121494(+)$1	254	83	100	13.5221
CGUGACUCAAAACUCAC	chr19:39923801-39924062(-)$1	261	156	173	13.1908
CCCGCCCCAGACAGCGG	chr19:55964454-55964798(-)$1	344	64	81	14.0591
CCGUGGAGGGUAACAUG	chr17:79918554-79918788(-)$1	234	175	192	13.8399
UGGGCCCCGUCUCGCCU	chr19:1010546-1010815(-)$1	269	108	125	13.0924
GUCAGCACAGACCCUGG	chr2:242511715-242511969(+)$1	254	17	34	12.4824
GCGGCGGAAAAUAGCCU	chr6:33240303-33240527(+)$1	224	163	180	13.5920
AUGGAAAUAAACCUGCG	chr17:80197156-80197379(+)$1	223	163	180	13.0710
CUGGAACUCUAACUCCA	chr17:74077260-74077517(-)$1	257	139	156	14.1320
AGCCAUCUCAGGUUGGC	chr21:46934720-46935044(-)$1	324	17	34	13.1908
GUGAGACAGAGCCCUUG	chr16:1496098-1496378(-)$1	280	102	119	13.8399
AGGGGAAUACUGACUCC	chr11:63743603-63743867(+)$1	264	46	63	14.1320
ACCUAAACACUUAUAGG	chr10:102744142-102744384(+)$1	242	30	47	13.8399
CACCACAUCGUCCUGGU	chr22:39917544-39917774(+)$1	230	145	162	12.4824
CAGGAAAAUUACAUCCU	chr22:30824403-30824810(+)$1	407	387	404	13.1908
GUGUAUUCUGCCCUGCG	chr1:150238391-150238660(-)$1	269	95	112	13.8399
UUGCUGGAGGUAGAGGA	chr17:46137199-46137512(+)$1	313	71	88	13.3177
UCCGCUUUUCCCUGCCC	chr18:2920213-2920482(-)$1	269	108	125	12.8375
GGCAGCAGCAGCCCUGC	chr3:47894174-47894434(-)$1	260	224	241	13.0855
UCUCUGUCUCUGUGGAA	chr21:46934916-46935179(-)$1	263	134	151	13.6904
GCCACAGCCUGAGGUGG	chr17:80196510-80196756(+)$1	246	191	208	13.8399
GUCUCUCCUCCAUGUGG	chr11:60703187-60703542(+)$1	355	52	69	13.4650
UGCUUUAUUUUUCAGGC	chr16:74485845-74486141(-)$1	296	97	114	13.1908
GGACCCCCUCCACGGCC	chr1:6694594-6694867(-)$1	273	151	168	13.4951
AUGUGUGCAACAUCACA	chr1:183521966-183522233(+)$1	267	118	135	13.8399
CUUUGCCUCUCCCCAAA	chr11:64532871-64533151(-)$1	280	132	149	14.1320
AGAGUCUAUCUAAGCUC	chr22:42981107-42981372(-)$1	265	191	208	12.4824
CGCUGAUGUCCUCCAGC	chr16:31501732-31501981(-)$1	249	211	228	13.1908
AGCCCAUGACCCGGGGC	chr9:130169501-130169817(+)$1	316	169	186	13.8399
GAAUCGAGUCCCAGAAC	chr9:19380089-19380314(-)$1	225	169	186	13.2628
UAACAUUCACUCUUGUU	chr17:73841807-73842086(-)$1	279	131	148	13.1908
GUGUGCCCUGUCUCAUG	chr17:79782119-79782366(-)$1	247	52	69	12.4824
AGUGGAGAUGGGGCUGG	chr17:7491252-7491557(+)$1	305	175	192	13.7533
GGGGCAUGGGGGAGCCC	chr19:55998112-55998386(+)$1	274	56	73	13.8399

#DB
(((((........))).	chr19:1581150-1581368(-)$1	1	116	133	13.0658
.((((........))))	chr16:31501541-31501787(-)$1	1	17	34	14.0302
(((((........).))	chrX:48761790-48762082(-)$1	1	131	148	13.6541
(((((........))..	chr19:55998502-55998798(+)$1	1	94	111	12.9910
((.((........)).)	chr4:2930132-2930392(+)$1	1	83	100	13.3177
(((((........))))	chr20:61919628-61919960(+)$1	1	78	95	13.8399
.((((........))))	chr17:80197179-80197428(+)$1	1	191	208	14.1320
(.(((........))).	chr20:61598744-61599040(+)$1	1	85	102	13.6720
(.(((........))).	chr5:176524512-176524797(+)$1	1	200	217	13.6996
.(.((........)).)	chr17:79826501-79826765(-)$1	1	67	84	13.1696
(((((........))))	chr19:8438881-8439199(+)$1	1	71	88	13.8399
((.((........))))	chr17:1657516-1657758(+)$1	1	30	47	13.4130
...((........))..	chr3:52027669-52027940(-)$1	1	231	248	12.8269
(((((........))))	chr16:1496178-1496430(-)$1	1	154	171	13.8399
.((((........))))	chr19:11033680-11033954(-)$1	1	185	202	14.1320
(((((........))))	chr2:242757797-242758060(+)$1	1	42	59	13.8399
.((((........))))	chr14:20926387-20926703(-)$1	1	12	29	14.1320
(.(((........))).	chr21:45879744-45879976(+)$1	1	186	203	13.6874
)((((........))))	chr1:1374801-1375104(+)$1	1	226	243	13.9219
..(((........))).	chr16:66965918-66966212(-)$1	1	125	142	12.3556
...((........))..	chr19:58906008-58906267(+)$1	1	165	182	13.1041
((.((........))..	chr16:28847591-28847984(+)$1	1	40	57	12.7497
..(((........))).	chr19:3121240-3121494(+)$1	1	83	100	13.5221
.((((........))))	chr19:39923801-39924062(-)$1	1	156	173	13.1908
)((((........))))	chr19:55964454-55964798(-)$1	1	64	81	14.0591
(((((........))))	chr17:79918554-79918788(-)$1	1	175	192	13.8399
(((((........))))	chr19:1010546-1010815(-)$1	1	108	125	13.0924
(((((........))))	chr2:242511715-242511969(+)$1	1	17	34	12.4824
(((((........))).	chr6:33240303-33240527(+)$1	1	163	180	13.5920
(((.(........).))	chr17:80197156-80197379(+)$1	1	163	180	13.0710
.((((........))))	chr17:74077260-74077517(-)$1	1	139	156	14.1320
.((((........))))	chr21:46934720-46935044(-)$1	1	17	34	13.1908
(((((........))))	chr16:1496098-1496378(-)$1	1	102	119	13.8399
.((((........))))	chr11:63743603-63743867(+)$1	1	46	63	14.1320
(((((........))))	chr10:102744142-102744384(+)$1	1	30	47	13.8399
(((((........))))	chr22:39917544-39917774(+)$1	1	145	162	12.4824
.((((........))))	chr22:30824403-30824810(+)$1	1	387	404	13.1908
(((((........))))	chr1:150238391-150238660(-)$1	1	95	112	13.8399
((.((........)).)	chr17:46137199-46137512(+)$1	1	71	88	13.3177
(((((........))..	chr18:2920213-2920482(-)$1	1	108	125	12.8375
(((((........))))	chr3:47894174-47894434(-)$1	1	224	241	13.0855
(.(((........))).	chr21:46934916-46935179(-)$1	1	134	151	13.6904
(((((........))))	chr17:80196510-80196756(+)$1	1	191	208	13.8399
(((.(........).))	chr11:60703187-60703542(+)$1	1	52	69	13.4650
.((((........))))	chr16:74485845-74486141(-)$1	1	97	114	13.1908
((.((........))))	chr1:6694594-6694867(-)$1	1	151	168	13.4951
(((((........))))	chr1:183521966-183522233(+)$1	1	118	135	13.8399
.((((........))))	chr11:64532871-64533151(-)$1	1	132	149	14.1320
(((((........))))	chr22:42981107-42981372(-)$1	1	191	208	12.4824
.((((........))))	chr16:31501732-31501981(-)$1	1	211	228	13.1908
(((((........))))	chr9:130169501-130169817(+)$1	1	169	186	13.8399
(..((........)).)	chr9:19380089-19380314(-)$1	1	169	186	13.2628
.((((........))))	chr17:73841807-73842086(-)$1	1	131	148	13.1908
(((((........))))	chr17:79782119-79782366(-)$1	1	52	69	12.4824
(.(((........))).	chr17:7491252-7491557(+)$1	1	175	192	13.7533
(((((........))))	chr19:55998112-55998386(+)$1	1	56	73	13.8399

#PSSM
e : 0.28	[ : 0.12	d : 0.10	f : 0.10	: : 0.10	c : 0.07	" : 0.05	g : 0.05	b : 0.01	# : 0.01	a : 0.01	$ : 0.01	i : 0.01	
d : 0.35	e : 0.24	[ : 0.08	f : 0.08	" : 0.05	c : 0.03	g : 0.03	b : 0.01	a : 0.01	$ : 0.01	i : 0.01	! : 0.01	
d : 0.30	e : 0.23	c : 0.17	[ : 0.10	f : 0.07	" : 0.03	g : 0.03	i : 0.01	! : 0.01	
d : 0.26	e : 0.23	b : 0.19	c : 0.16	f : 0.07	[ : 0.03	i : 0.01	g : 0.01	
d : 0.26	e : 0.21	b : 0.19	c : 0.16	f : 0.07	a : 0.05	i : 0.01	g : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.26	e : 0.21	b : 0.19	c : 0.16	f : 0.07	a : 0.05	i : 0.01	g : 0.01	
d : 0.26	e : 0.21	b : 0.19	c : 0.16	f : 0.07	] : 0.05	i : 0.01	g : 0.01	
d : 0.30	e : 0.24	c : 0.17	2 : 0.07	] : 0.07	f : 0.07	4 : 0.01	i : 0.01	g : 0.01	
d : 0.35	e : 0.24	] : 0.08	2 : 0.08	f : 0.07	3 : 0.03	a : 0.01	5 : 0.01	4 : 0.01	i : 0.01	c : 0.01	g : 0.01	

#score	753.8498886890471
#seq	56
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_CDS_m2_run1.txt

#BEAR
!ccc[bb"""cccmmmmccc]bbccc22a]	chr14:39646699-39646954(+)$1	255	116	146	12.2098
cc[dddd!!ddddmmmmdddddddd]ccc]	chr21:46193359-46193565(-)$1	206	98	128	13.7469
!ggggggg!!cccmmmmccc]ggggggg22	chr3:124369553-124369899(+)$1	346	296	326	12.6382
eee[a[cccddddmmmmdddd666666ccc	chr21:47722344-47722592(-)$1	248	107	137	10.9595
cc[a!!a[eeeeemmmmeeeeea]a]ccc2	chr19:41781965-41782201(+)$1	236	131	161	12.0741
cc!!ccc!!ddddmmmmdddd22ccc22cc	chr3:52558733-52558997(-)$1	264	173	203	14.9245
ff!!ffffffcccmmmmccc4444ffffff	chr20:34220129-34220390(-)$1	261	188	218	11.2602
bdddd####ddddmmmmdddd4444dddd:	chr10:70143463-70143725(-)$1	262	46	76	14.2257
eedddd!!cccbbmmmmbb]ccc22dddd]	chr6:170034424-170034631(-)$1	207	172	202	10.8960
d"""ccc!!ddddmmmmdddd4444ccc55	chr2:234356825-234357114(+)$1	289	149	179	13.9049
!!dddd!!eeeeemmmmeeeee]dddd]bb	chr10:122646099-122646327(+)$1	228	157	187	11.8909
[dddd!!a[ddddllldddd22a22dddd]	chr16:716839-717079(+)$1	240	124	154	11.3886
cc[bb####ddddmmmmdddd4444bb]cc	chr6:33170085-33170303(+)$1	218	174	204	14.6260
"""dddd!!ddddmmmmdddd]dddd333b	chr2:27683797-27684048(-)$1	251	89	119	14.7487
f!!bb[ccc[cccmmmmccc]ccc]bb22f	chr1:146757887-146758145(+)$1	258	122	152	11.9411
dddd[dddd[cccmmmmccc4444dddd]d	chr11:976996-977224(+)$1	228	72	102	12.3918
dd[dddd!!ddddmmmmdddd22dddd333	chr11:489296-489607(+)$1	311	27	57	14.7990
$$$eeeee!!cccmmmmccc22eeeee333	chr10:105182745-105182984(+)$1	239	40	70	12.5792
e!!aeeeee[cccmmmmccc22eeeee]a2	chr19:13034861-13035095(-)$1	234	132	162	12.2337
b"""iiiiiiiiimmmmiiiiiiiii333b	chr19:11526512-11526765(-)$1	253	82	112	11.8984
""dddd[a!!cccmmmmccc22a]dddddd	chr3:47038652-47038909(+)$1	257	53	83	13.6974
ggggg"""a[cccmmmmccca333gggggg	chr1:110173228-110173456(+)$1	228	38	68	14.3695
bb[==========mmmm==========]bb	chr2:233671214-233671464(+)$1	250	102	132	11.6086
eeeee####ddddmmmmdddd4444eeeee	chrX:18954073-18954342(-)$1	269	151	181	14.3589
gggg"""bb[cccmmmmcccbb333ggggg	chr12:48371064-48371299(-)$1	235	118	148	12.4103
gggggg!!ccc[ammmma]ccc22gggggg	chr20:49126999-49127227(+)$1	228	2	32	12.0438
dd!!eeeeeddddmmmmdddd]eeeeeddd	chr15:75654881-75655103(-)$1	222	101	131	12.3996
###dddd!!ddddmmmmdddd22ddddiii	chr12:48184938-48185186(-)$1	248	99	129	14.5995
ddd[bb"""ddddmmmmdddd]bb]dddd2	chr9:131804616-131804899(+)$1	283	145	175	13.2427
g!!ccc!!eeeeemmmmeeeee333ccc22	chr11:47237890-47238121(+)$1	231	82	112	13.3302
ee"""ccc[ddddmmmmddddccc22eeee	chr19:12874270-12874510(-)$1	240	93	123	12.7919
hhh[ccc!!ddddmmmmdddd22ccc22hh	chr14:21960358-21960606(+)$1	248	32	62	13.5343
=========[cccmmmmccc]=========	chr6:131997806-131998041(+)$1	235	181	211	13.3723
b[dddd"""ddddmmmmddddddddbb22c	chr1:32157505-32157766(-)$1	261	162	192	13.3816
gdddd!!bb[cccmmmmccc]bb22dddd2	chr17:12913840-12914088(-)$1	248	179	209	11.7436
b!!accc!!ddddmmmmdddd]ccc]a22b	chrX:54570597-54570841(+)$1	244	104	134	14.6365
:a[dddd!!cccammmma]ccc22dddd]a	chr3:47896638-47896949(-)$1	311	270	300	11.9978
c[eeeee!!ddddmmmmdddd]eeeeeccc	chr11:66260450-66260739(+)$1	289	205	235	13.6087
bb[ccc####cccmmmmccc22ccc]bbcc	chr2:153515493-153515758(-)$1	265	116	146	13.0289
a[ccc"""cccbbmmmmbb22ccc333ccc	chr18:55280788-55281013(-)$1	225	158	188	11.7765
""ccc"""eeeeemmmmeeeeeccc]gggg	chr3:12633075-12633374(-)$1	299	133	163	12.4708
""ccc[cccddddmmmmdddd]ccc22ccc	chr17:40632614-40632869(+)$1	255	159	189	13.7075
[cccddddeeeeemmmmeeeee4444dddd	chr17:26964768-26965005(-)$1	237	56	86	11.3815
:ggggggg!!cccmmmmccc]gggggggcc	chr22:50686214-50686473(-)$1	259	96	126	11.8498
::ccc!!a[ddddmmmmdddd]a22ccc:e	chr2:236658906-236659160(+)$1	254	108	138	11.9422
[dddd!!ccccccmmmmccc333ccc]ddd	chr6:31506846-31507064(-)$1	218	110	140	13.5329
ddd[bbccc[cccmmmmccc]ccc]bb]dd	chr19:45556283-45556535(+)$1	252	216	246	11.2737
b####ccc[ddddmmmmdddd22ccc22bb	chr10:135207596-135207886(+)$1	290	215	245	13.5935
ccdddd[a!!cccmmmmccca]dddd]ccc	chr21:46906693-46906928(+)$1	235	79	109	13.2373
BBdddd"""ddddmmmmdddd333ddddHH	chr7:141310893-141311189(+)$1	296	29	59	12.4506
eeeee"""eeeeemmmmeeeee333eeeee	chr6:43096917-43097119(+)$1	202	135	165	12.1806
c!!eeeee[ddddmmmmdddd]eeeee444	chr16:23494143-23494365(-)$1	222	177	207	13.5374
fffff[cccddddmmmmdddd]ccc]ffff	chr12:2930629-2930861(+)$1	232	78	108	12.1898

#otherMatches

#Seq PSSM
UUGUAGCUACCUCCAAAGAGCGCACACGUA	chr14:39646699-39646954(+)$1	255	116	146	12.2098
UGGCAGGUAAGGCCCGAGCCUCCUGGCAGG	chr21:46193359-46193565(-)$1	206	98	128	13.7469
UUGGGGAAAAUUCGAGAGGGGUUCCCCACG	chr3:124369553-124369899(+)$1	346	296	326	12.6382
GUGGAGCUGCUGCUGCUGCAGAACGCACAG	chr21:47722344-47722592(-)$1	248	107	137	10.9595
AUCGGAGUAGUGGCUAUCCGCUCACAAUUG	chr19:41781965-41782201(+)$1	236	131	161	12.0741
GUGGGGCCAGGGCAGGAGUCCCAGCCAAGC	chr3:52558733-52558997(-)$1	264	173	203	14.9245
CUUAACAUCAAUGAAUUCAUGAGGUGAUGU	chr20:34220129-34220390(-)$1	261	188	218	11.2602
CUUCCUAGGUUACCAAAGUAGAUGUGGAAA	chr10:70143463-70143725(-)$1	262	46	76	14.2257
UGUGCUGAGCAUCUCGUGAGUGUCAGGCAU	chr6:170034424-170034631(-)$1	207	172	202	10.8960
AGAAGACGACCGAGAGCUCGGAGGAGUCAG	chr2:234356825-234357114(+)$1	289	149	179	13.9049
AACAUUUUGUAUUUACCGAUAUUGAUGGCC	chr10:122646099-122646327(+)$1	228	157	187	11.8909
CCACCUCCUGGCUGUUGGCUUUGCUGGUGA	chr16:716839-717079(+)$1	240	124	154	11.3886
AUCUUAUGGCCCUCAGGAGGGAGAGGACAU	chr6:33170085-33170303(+)$1	218	174	204	14.6260
CAGGUGAUCUCUUUGAGAAGAUUCACAAUC	chr2:27683797-27684048(-)$1	251	89	119	14.7487
UCUGCCUGCCCUCUGAGGAGAGCGAGCCAG	chr1:146757887-146758145(+)$1	258	122	152	11.9411
AGUGACUCUUGACGUCUGUCUUUCAGAGAC	chr11:976996-977224(+)$1	228	72	102	12.3918
ACAGUCUGUUGCCCGAUGGCACAGGGCAGG	chr11:489296-489607(+)$1	311	27	57	14.7990
AUGUUCCUUGACCUAGUGGUGCAGGAGGUG	chr10:105182745-105182984(+)$1	239	40	70	12.5792
UAAGUGCCCAAGUGGAAACUCGGGGUGUCC	chr19:13034861-13035095(-)$1	234	132	162	12.2337
GAAGCUUCUGGAAGAUUUUUUGGAGGAGGC	chr19:11526512-11526765(-)$1	253	82	112	11.8984
ACUGGCUGGAAGGUCCCCCUCACUGCCAUC	chr3:47038652-47038909(+)$1	257	53	83	13.6974
CCAGGGCGCACUCGUCUGAGGGAACCUGGC	chr1:110173228-110173456(+)$1	228	38	68	14.3695
AUGUGGGGAAGGGUUCCCUUUUCUCCAGGU	chr2:233671214-233671464(+)$1	250	102	132	11.6086
CGCUGUCCCGCCUAACAAGGUAACCCAGUG	chrX:18954073-18954342(-)$1	269	151	181	14.3589
AGCUCCUGGAGCCCCUGGGCCCCCUGGCUC	chr12:48371064-48371299(-)$1	235	118	148	12.4103
GGCCUAGAGCGGCAGACGGCGCAGUGGGCC	chr20:49126999-49127227(+)$1	228	2	32	12.0438
UCAUCUUUGCCUGCUCCCAGGUCAGAGGGA	chr15:75654881-75655103(-)$1	222	101	131	12.3996
CCUGGCACAGCGGAUGUUUGUGAUGCUGCC	chr12:48184938-48185186(-)$1	248	99	129	14.5995
CUUGGCCAGGAAGGUCCCUUCAGUGAAGAA	chr9:131804616-131804899(+)$1	283	145	175	13.2427
ACCCUCCACCAGCAUAAGCUGGGCAGAGCU	chr11:47237890-47238121(+)$1	231	82	112	13.3302
ACAGAUGGACUUUGAGAAAAGCCGAAGUCA	chr19:12874270-12874510(-)$1	240	93	123	12.7919
ACUAUCAGUCUUUCCUAAGAGUAUGGGGAG	chr14:21960358-21960606(+)$1	248	32	62	13.5343
GGUAAAAAAUGAAGUUUUUUUUUUUUUACU	chr6:131997806-131998041(+)$1	235	181	211	13.3723
UAGGUGCCUGGGACCCUUCCCCACCACAAC	chr1:32157505-32157766(-)$1	261	162	192	13.3816
GGCUGUACAUGACUGGGGUCUUGGUCAGCG	chr17:12913840-12914088(-)$1	248	179	209	11.7436
GAAUGAGUUGCCAACCGUGGCUUUCAAGGC	chrX:54570597-54570841(+)$1	244	104	134	14.6365
GGUCAGGGUCCUCACAGGUAGGCACCUGUC	chr3:47896638-47896949(-)$1	311	270	300	11.9978
CGCCAGCAGUCGGAGGGUCGGGGCUGGGCC	chr11:66260450-66260739(+)$1	289	205	235	13.6087
GUUCUGCUUCAGAACAUUCUUCUAGUGCAG	chr2:153515493-153515758(-)$1	265	116	146	13.0289
GUCCACAGGCUGCGCAGGCAAGGUAAAUGG	chr18:55280788-55281013(-)$1	225	158	188	11.7765
UUCCAGGCCUUCAGGAAUGAGGUGGCUGUU	chr3:12633075-12633374(-)$1	299	133	163	12.4708
GAGGCAUGCCUCUACCAGGAGUGCACAGCC	chr17:40632614-40632869(+)$1	255	159	189	13.7075
CUAGGCACUCUUCAUUUGGGGAAUCUGUGU	chr17:26964768-26965005(-)$1	237	56	86	11.3815
CCUGACGUCAUCCAACAGGAAGCGUCAGCC	chr22:50686214-50686473(-)$1	259	96	126	11.8498
AACCCGAGGGUCAUCGAUGACGCCAGGGCG	chr2:236658906-236659160(+)$1	254	108	138	11.9422
ACUGCAACAGCUGGAGCCAGUUACUGGGCA	chr6:31506846-31507064(-)$1	218	110	140	13.5329
GGUUUGGGAAGAAAAGUUUUAUCCACAUAC	chr19:45556283-45556535(+)$1	252	216	246	11.2737
UGGUUCCCGGGCCACAUGGCCAAGGGUGAG	chr10:135207596-135207886(+)$1	290	215	245	13.5935
AGGGGAGCAAGGGAGCCCCCGGUCCUGCUG	chr21:46906693-46906928(+)$1	235	79	109	13.2373
CCCACAUUUUUAAACCUUUAACCUUGUGGC	chr7:141310893-141311189(+)$1	296	29	59	12.4506
UGAGGCCUGGGGGAUCCCUCCCUUACCUCA	chr6:43096917-43097119(+)$1	202	135	165	12.1806
CCCUCCUGUCACACUGCUGUGCCAGGAACA	chr16:23494143-23494365(-)$1	222	177	207	13.5374
GGCCACGGCACUGAGAGUAGUGGCUCUGGC	chr12:2930629-2930861(+)$1	232	78	108	12.1898

#DB
.(((.((...(((....))).)))))..).	chr14:39646699-39646954(+)$1	1	116	146	12.2098
((.((((..((((....)))))))).))).	chr21:46193359-46193565(-)$1	1	98	128	13.7469
.(((((((..(((....))).)))))))..	chr3:124369553-124369899(+)$1	1	296	326	12.6382
(((.(.(((((((....))))......)))	chr21:47722344-47722592(-)$1	1	107	137	10.9595
((.(..(.(((((....)))))).).))).	chr19:41781965-41782201(+)$1	1	131	161	12.0741
((..(((..((((....))))..)))..))	chr3:52558733-52558997(-)$1	1	173	203	14.9245
((..(((((((((....)))....))))))	chr20:34220129-34220390(-)$1	1	188	218	11.2602
)((((....((((....))))....)))).	chr10:70143463-70143725(-)$1	1	46	76	14.2257
((((((..(((((....)).)))..)))).	chr6:170034424-170034631(-)$1	1	172	202	10.8960
(...(((..((((....))))....)))..	chr2:234356825-234357114(+)$1	1	149	179	13.9049
..((((..(((((....))))).)))).))	chr10:122646099-122646327(+)$1	1	157	187	11.8909
.((((..(.((((...))))..)..)))).	chr16:716839-717079(+)$1	1	124	154	11.3886
((.((....((((....))))....)).))	chr6:33170085-33170303(+)$1	1	174	204	14.6260
...((((..((((....)))).))))...)	chr2:27683797-27684048(-)$1	1	89	119	14.7487
(..((.(((.(((....))).))).))..)	chr1:146757887-146758145(+)$1	1	122	152	11.9411
((((.((((.(((....)))....)))).)	chr11:976996-977224(+)$1	1	72	102	12.3918
((.((((..((((....))))..))))...	chr11:489296-489607(+)$1	1	27	57	14.7990
...(((((..(((....)))..)))))...	chr10:105182745-105182984(+)$1	1	40	70	12.5792
(..((((((.(((....)))..))))).).	chr19:13034861-13035095(-)$1	1	132	162	12.2337
(...(((((((((....)))))))))...)	chr19:11526512-11526765(-)$1	1	82	112	11.8984
..((((.(..(((....)))..).))))))	chr3:47038652-47038909(+)$1	1	53	83	13.6974
(((((...(.(((....))))...))))))	chr1:110173228-110173456(+)$1	1	38	68	14.3695
((.((((((((((....)))))))))).))	chr2:233671214-233671464(+)$1	1	102	132	11.6086
(((((....((((....))))....)))))	chrX:18954073-18954342(-)$1	1	151	181	14.3589
((((...((.(((....)))))...)))))	chr12:48371064-48371299(-)$1	1	118	148	12.4103
((((((..(((.(....).)))..))))))	chr20:49126999-49127227(+)$1	1	2	32	12.0438
((..(((((((((....)))).))))))))	chr15:75654881-75655103(-)$1	1	101	131	12.3996
...((((..((((....))))..)))))))	chr12:48184938-48185186(-)$1	1	99	129	14.5995
(((.((...((((....)))).)).)))).	chr9:131804616-131804899(+)$1	1	145	175	13.2427
(..(((..(((((....)))))...)))..	chr11:47237890-47238121(+)$1	1	82	112	13.3302
((...(((.((((....)))))))..))))	chr19:12874270-12874510(-)$1	1	93	123	12.7919
(((.(((..((((....))))..)))..))	chr14:21960358-21960606(+)$1	1	32	62	13.5343
(((((((((.(((....))).)))))))))	chr6:131997806-131998041(+)$1	1	181	211	13.3723
(.((((...((((....))))))))))..)	chr1:32157505-32157766(-)$1	1	162	192	13.3816
(((((..((.(((....))).))..)))).	chr17:12913840-12914088(-)$1	1	179	209	11.7436
(..((((..((((....)))).))).)..)	chrX:54570597-54570841(+)$1	1	104	134	14.6365
.(.((((..((((....).)))..)))).)	chr3:47896638-47896949(-)$1	1	270	300	11.9978
(.(((((..((((....)))).))))))))	chr11:66260450-66260739(+)$1	1	205	235	13.6087
((.(((....(((....)))..))).))))	chr2:153515493-153515758(-)$1	1	116	146	13.0289
(.(((...(((((....))..)))...)))	chr18:55280788-55281013(-)$1	1	158	188	11.7765
..(((...(((((....)))))))).))))	chr3:12633075-12633374(-)$1	1	133	163	12.4708
..(((.(((((((....)))).)))..)))	chr17:40632614-40632869(+)$1	1	159	189	13.7075
.((((((((((((....)))))....))))	chr17:26964768-26965005(-)$1	1	56	86	11.3815
.(((((((..(((....))).)))))))((	chr22:50686214-50686473(-)$1	1	96	126	11.8498
..(((..(.((((....)))).)..))).(	chr2:236658906-236659160(+)$1	1	108	138	11.9422
.((((..((((((....)))...))).)))	chr6:31506846-31507064(-)$1	1	110	140	13.5329
(((.(((((.(((....))).))).)).))	chr19:45556283-45556535(+)$1	1	216	246	11.2737
(....(((.((((....))))..)))..))	chr10:135207596-135207886(+)$1	1	215	245	13.5935
((((((.(..(((....)))).)))).)))	chr21:46906693-46906928(+)$1	1	79	109	13.2373
((((((...((((....))))...))))((	chr7:141310893-141311189(+)$1	1	29	59	12.4506
(((((...(((((....)))))...)))))	chr6:43096917-43097119(+)$1	1	135	165	12.1806
(..(((((.((((....)))).)))))...	chr16:23494143-23494365(-)$1	1	177	207	13.5374
(((((.(((((((....)))).))).))))	chr12:2930629-2930861(+)$1	1	78	108	12.1898

#PSSM
c : 0.13	b : 0.13	e : 0.11	d : 0.11	g : 0.09	" : 0.07	! : 0.05	f : 0.05	[ : 0.05	: : 0.05	$ : 0.01	# : 0.01	h : 0.01	= : 0.01	a : 0.01	B : 0.01	
d : 0.16	c : 0.13	" : 0.11	! : 0.11	g : 0.09	e : 0.09	[ : 0.05	f : 0.03	b : 0.03	# : 0.03	$ : 0.01	h : 0.01	= : 0.01	a : 0.01	: : 0.01	B : 0.01	
d : 0.24	! : 0.15	[ : 0.13	c : 0.11	g : 0.09	e : 0.07	" : 0.07	# : 0.03	$ : 0.01	h : 0.01	= : 0.01	f : 0.01	
d : 0.30	c : 0.15	g : 0.09	e : 0.09	[ : 0.07	a : 0.05	! : 0.05	" : 0.05	b : 0.03	= : 0.03	# : 0.01	f : 0.01	
d : 0.30	c : 0.18	e : 0.13	g : 0.07	b : 0.07	[ : 0.03	f : 0.03	= : 0.03	" : 0.03	a : 0.01	! : 0.01	i : 0.01	# : 0.01	
d : 0.24	c : 0.15	! : 0.09	e : 0.09	" : 0.09	[ : 0.07	b : 0.05	g : 0.05	# : 0.05	= : 0.03	f : 0.01	i : 0.01	
c : 0.20	! : 0.15	" : 0.15	d : 0.13	e : 0.09	# : 0.07	g : 0.03	[ : 0.03	= : 0.03	b : 0.01	a : 0.01	f : 0.01	i : 0.01	
! : 0.26	" : 0.15	c : 0.15	# : 0.07	a : 0.07	e : 0.07	g : 0.03	d : 0.03	= : 0.03	b : 0.03	[ : 0.01	f : 0.01	i : 0.01	
! : 0.28	c : 0.16	e : 0.15	[ : 0.09	" : 0.07	# : 0.07	= : 0.03	b : 0.03	f : 0.01	d : 0.01	i : 0.01	a : 0.01	
d : 0.45	[ : 0.15	e : 0.11	! : 0.09	c : 0.09	" : 0.01	f : 0.01	i : 0.01	= : 0.01	# : 0.01	
d : 0.45	c : 0.39	e : 0.11	i : 0.01	= : 0.01	
d : 0.45	c : 0.33	e : 0.11	b : 0.03	i : 0.01	= : 0.01	[ : 0.01	
d : 0.45	c : 0.32	e : 0.11	b : 0.03	a : 0.03	i : 0.01	= : 0.01	
m : 0.98	l : 0.01	
m : 0.98	l : 0.01	
m : 0.98	l : 0.01	
m : 0.98	d : 0.01	
d : 0.45	c : 0.32	e : 0.11	b : 0.03	a : 0.03	i : 0.01	= : 0.01	
d : 0.45	c : 0.32	e : 0.11	b : 0.03	] : 0.03	i : 0.01	= : 0.01	
d : 0.45	c : 0.35	e : 0.11	] : 0.01	i : 0.01	= : 0.01	2 : 0.01	
d : 0.43	] : 0.13	e : 0.11	2 : 0.11	c : 0.05	4 : 0.03	a : 0.03	i : 0.01	= : 0.01	b : 0.01	3 : 0.01	
2 : 0.18	] : 0.18	c : 0.13	e : 0.11	4 : 0.11	b : 0.05	3 : 0.05	d : 0.03	g : 0.03	= : 0.03	6 : 0.01	i : 0.01	
c : 0.18	2 : 0.13	4 : 0.13	3 : 0.11	e : 0.09	d : 0.07	a : 0.07	b : 0.05	g : 0.03	= : 0.03	6 : 0.01	] : 0.01	i : 0.01	
c : 0.26	d : 0.13	4 : 0.13	2 : 0.11	e : 0.09	3 : 0.09	g : 0.03	] : 0.03	= : 0.03	6 : 0.01	i : 0.01	b : 0.01	
d : 0.20	c : 0.18	4 : 0.09	2 : 0.09	e : 0.09	g : 0.07	3 : 0.07	] : 0.05	= : 0.03	6 : 0.01	a : 0.01	f : 0.01	i : 0.01	
d : 0.26	c : 0.15	e : 0.13	] : 0.11	g : 0.09	b : 0.07	= : 0.03	2 : 0.03	6 : 0.01	f : 0.01	i : 0.01	3 : 0.01	4 : 0.01	
d : 0.24	e : 0.15	g : 0.11	2 : 0.09	c : 0.09	b : 0.09	3 : 0.05	f : 0.03	= : 0.03	] : 0.03	6 : 0.01	a : 0.01	
d : 0.22	c : 0.18	2 : 0.13	g : 0.11	] : 0.09	3 : 0.07	e : 0.05	f : 0.03	i : 0.01	= : 0.01	b : 0.01	4 : 0.01	
c : 0.20	d : 0.18	2 : 0.09	3 : 0.07	g : 0.07	b : 0.05	e : 0.05	a : 0.03	f : 0.03	] : 0.03	5 : 0.01	i : 0.01	h : 0.01	= : 0.01	: : 0.01	H : 0.01	4 : 0.01	
c : 0.18	2 : 0.11	b : 0.11	d : 0.11	] : 0.07	g : 0.07	e : 0.07	f : 0.05	3 : 0.03	: : 0.01	5 : 0.01	i : 0.01	h : 0.01	= : 0.01	a : 0.01	H : 0.01	4 : 0.01	

#score	680.6200689100849
#seq	53
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_UTR_m3_run1.txt

#BEAR
eeeooooooeee	chr8:38854436-38854722(+)$1	286	18	30	10.7685
dddooooooddd	chr8:98656633-98656897(+)$1	264	104	116	10.7242
eeeooooooeee	chr12:62926133-62926438(+)$1	305	104	116	10.7685
eeeooooooeee	chr2:187368679-187368932(+)$1	253	160	172	10.7685
dddooooooddd	chr14:73577688-73577954(+)$1	266	221	233	10.7242
dddooooooddd	chr22:22321872-22322109(-)$1	237	201	213	10.7242
cccooooooccc	chr22:20920696-20920966(+)$1	270	209	221	9.7221
eeeooooooeee	chr12:133245124-133245352(-)$1	228	42	54	10.7685
!!aooooooa22	chr16:75675450-75675705(-)$1	255	110	122	8.9907
eeeooooooeee	chr22:50015929-50016167(-)$1	238	87	99	10.7685
eeeooooooeee	chr2:70124693-70124979(+)$1	286	19	31	10.7685
dddooooooddd	chrX:118986701-118986995(-)$1	294	279	291	10.7242
cccooooooccc	chr3:196214183-196214493(-)$1	310	283	295	9.7221
eeeooooooeee	chr8:145650507-145650760(-)$1	253	8	20	10.7685
dddooooooddd	chr17:48823804-48824098(+)$1	294	166	178	10.7242
eeeooooooeee	chr17:43158907-43159162(+)$1	255	29	41	10.7685
dddooooooddd	chr19:17379673-17379943(+)$1	270	186	198	10.7242
dddooooooddd	chr16:4910572-4910894(+)$1	322	215	227	10.7242
eeeooooooeee	chr3:47043104-47043319(+)$1	215	118	130	10.7685
dddooooooddd	chr7:148921646-148921907(+)$1	261	192	204	10.7242
cccooooooccc	chr1:150192947-150193165(-)$1	218	164	176	9.7221
cccooooooccc	chr19:10260471-10260743(-)$1	272	65	77	9.7221
dddooooooddd	chr18:55282809-55283061(-)$1	252	184	196	10.7242
eeeooooooeee	chr9:35690399-35690681(-)$1	282	248	260	10.7685
cccooooooccc	chr19:8528418-8528666(+)$1	248	200	212	9.7221
dddooooooddd	chr7:42957058-42957322(-)$1	264	63	75	10.7242
eeeooooooeee	chr22:21224523-21224820(+)$1	297	106	118	10.7685
cccooooooccc	chr7:100483919-100484154(+)$1	235	206	218	9.7221
dddooooooddd	chr20:60911364-60911586(-)$1	222	198	210	10.7242
eeeooooooeee	chrX:153178677-153178968(-)$1	291	60	72	10.7685
eeeooooooeee	chr16:89350278-89350557(-)$1	279	179	191	10.7685
d[aooooooa]d	chr7:154760171-154760469(-)$1	298	262	274	9.8837
dddooooooddd	chr19:10261973-10262290(-)$1	317	103	115	10.7242
eeeooooooeee	chr11:65820043-65820279(+)$1	236	114	126	10.7685
!!aooooooa22	chr4:83277605-83277889(-)$1	284	207	219	8.9907
dddooooooddd	chr2:132021392-132021670(+)$1	278	91	103	10.7242
dddooooooddd	chr11:35684483-35684749(+)$1	266	6	18	10.7242
c[aooooooa]c	chr1:29319858-29320108(+)$1	250	52	64	9.5322
eeeooooooeee	chr7:98997833-98998055(-)$1	222	189	201	10.7685
cccooooooccc	chr3:196214111-196214383(-)$1	272	158	170	9.7221
eeeooooooeee	chr11:129992153-129992488(+)$1	335	263	275	10.7685
eeeooooooeee	chr20:61912565-61912782(+)$1	217	97	109	10.7685
dddooooooddd	chr9:139720130-139720374(+)$1	244	81	93	10.7242

#otherMatches

#Seq PSSM
GGCGCGCGUGCU	chr8:38854436-38854722(+)$1	286	18	30	10.7685
GCUGCACGGAGC	chr8:98656633-98656897(+)$1	264	104	116	10.7242
UUGAGCCUCCAA	chr12:62926133-62926438(+)$1	305	104	116	10.7685
AUGUAUCGUCAU	chr2:187368679-187368932(+)$1	253	160	172	10.7685
GCAAAUACCUGU	chr14:73577688-73577954(+)$1	266	221	233	10.7242
CUGGAGGAACAG	chr22:22321872-22322109(-)$1	237	201	213	10.7242
GCCCUCCCAGGC	chr22:20920696-20920966(+)$1	270	209	221	9.7221
UGGACGAAGCCA	chr12:133245124-133245352(-)$1	228	42	54	10.7685
AGAAGAAAGUAG	chr16:75675450-75675705(-)$1	255	110	122	8.9907
ACUCUUCCCAGU	chr22:50015929-50016167(-)$1	238	87	99	10.7685
uugagaauacaa	chr2:70124693-70124979(+)$1	286	19	31	10.7685
CCCGGGAGAGGG	chrX:118986701-118986995(-)$1	294	279	291	10.7242
CCCGCUCAUGGG	chr3:196214183-196214493(-)$1	310	283	295	9.7221
GACAAGACCGUC	chr8:145650507-145650760(-)$1	253	8	20	10.7685
AUCGAAGAAGAU	chr17:48823804-48824098(+)$1	294	166	178	10.7242
AGAAAGCUCUUU	chr17:43158907-43159162(+)$1	255	29	41	10.7685
UCCAAAUUCGGA	chr19:17379673-17379943(+)$1	270	186	198	10.7242
GCAUAAGCCUGU	chr16:4910572-4910894(+)$1	322	215	227	10.7242
GCCCCACCUGGC	chr3:47043104-47043319(+)$1	215	118	130	10.7685
CAACAGGCAUUG	chr7:148921646-148921907(+)$1	261	192	204	10.7242
GAUGACUAGAUC	chr1:150192947-150193165(-)$1	218	164	176	9.7221
AUGAUCCUCCAU	chr19:10260471-10260743(-)$1	272	65	77	9.7221
AAUGUGUAAGUU	chr18:55282809-55283061(-)$1	252	184	196	10.7242
CAGGGUAAACUG	chr9:35690399-35690681(-)$1	282	248	260	10.7685
UCCUACUUUGGA	chr19:8528418-8528666(+)$1	248	200	212	9.7221
AACAUAGAAGUU	chr7:42957058-42957322(-)$1	264	63	75	10.7242
CGCCCGUCAGCG	chr22:21224523-21224820(+)$1	297	106	118	10.7685
UACCUAUCUGUA	chr7:100483919-100484154(+)$1	235	206	218	9.7221
UGCCCUGGAGUA	chr20:60911364-60911586(-)$1	222	198	210	10.7242
CCGGAGGCGCGG	chrX:153178677-153178968(-)$1	291	60	72	10.7685
UGGGACUCGCCA	chr16:89350278-89350557(-)$1	279	179	191	10.7685
UCCACCUCAGCA	chr7:154760171-154760469(-)$1	298	262	274	9.8837
GAUGAGGAAGUC	chr19:10261973-10262290(-)$1	317	103	115	10.7242
CUGGUGGAGCGG	chr11:65820043-65820279(+)$1	236	114	126	10.7685
CUAUACUUUUUA	chr4:83277605-83277889(-)$1	284	207	219	8.9907
UGACCCAGAUCA	chr2:132021392-132021670(+)$1	278	91	103	10.7242
CCCGGGCAGGGG	chr11:35684483-35684749(+)$1	266	6	18	10.7242
UCCAAAAUAGAA	chr1:29319858-29320108(+)$1	250	52	64	9.5322
GAUGCUAAGGUC	chr7:98997833-98998055(-)$1	222	189	201	10.7685
UGCGCUGCUGCA	chr3:196214111-196214383(-)$1	272	158	170	9.7221
AUGUAGAGCCAU	chr11:129992153-129992488(+)$1	335	263	275	10.7685
UGGAGCCAGCCG	chr20:61912565-61912782(+)$1	217	97	109	10.7685
AGGAUUCUCCCU	chr9:139720130-139720374(+)$1	244	81	93	10.7242

#DB
(((......)))	chr8:38854436-38854722(+)$1	1	18	30	10.7685
(((......)))	chr8:98656633-98656897(+)$1	1	104	116	10.7242
(((......)))	chr12:62926133-62926438(+)$1	1	104	116	10.7685
(((......)))	chr2:187368679-187368932(+)$1	1	160	172	10.7685
(((......)))	chr14:73577688-73577954(+)$1	1	221	233	10.7242
(((......)))	chr22:22321872-22322109(-)$1	1	201	213	10.7242
(((......)))	chr22:20920696-20920966(+)$1	1	209	221	9.7221
(((......)))	chr12:133245124-133245352(-)$1	1	42	54	10.7685
..(......)..	chr16:75675450-75675705(-)$1	1	110	122	8.9907
(((......)))	chr22:50015929-50016167(-)$1	1	87	99	10.7685
(((......)))	chr2:70124693-70124979(+)$1	1	19	31	10.7685
(((......)))	chrX:118986701-118986995(-)$1	1	279	291	10.7242
(((......)))	chr3:196214183-196214493(-)$1	1	283	295	9.7221
(((......)))	chr8:145650507-145650760(-)$1	1	8	20	10.7685
(((......)))	chr17:48823804-48824098(+)$1	1	166	178	10.7242
(((......)))	chr17:43158907-43159162(+)$1	1	29	41	10.7685
(((......)))	chr19:17379673-17379943(+)$1	1	186	198	10.7242
(((......)))	chr16:4910572-4910894(+)$1	1	215	227	10.7242
(((......)))	chr3:47043104-47043319(+)$1	1	118	130	10.7685
(((......)))	chr7:148921646-148921907(+)$1	1	192	204	10.7242
(((......)))	chr1:150192947-150193165(-)$1	1	164	176	9.7221
(((......)))	chr19:10260471-10260743(-)$1	1	65	77	9.7221
(((......)))	chr18:55282809-55283061(-)$1	1	184	196	10.7242
(((......)))	chr9:35690399-35690681(-)$1	1	248	260	10.7685
(((......)))	chr19:8528418-8528666(+)$1	1	200	212	9.7221
(((......)))	chr7:42957058-42957322(-)$1	1	63	75	10.7242
(((......)))	chr22:21224523-21224820(+)$1	1	106	118	10.7685
(((......)))	chr7:100483919-100484154(+)$1	1	206	218	9.7221
(((......)))	chr20:60911364-60911586(-)$1	1	198	210	10.7242
(((......)))	chrX:153178677-153178968(-)$1	1	60	72	10.7685
(((......)))	chr16:89350278-89350557(-)$1	1	179	191	10.7685
(.(......).)	chr7:154760171-154760469(-)$1	1	262	274	9.8837
(((......)))	chr19:10261973-10262290(-)$1	1	103	115	10.7242
(((......)))	chr11:65820043-65820279(+)$1	1	114	126	10.7685
..(......)..	chr4:83277605-83277889(-)$1	1	207	219	8.9907
(((......)))	chr2:132021392-132021670(+)$1	1	91	103	10.7242
(((......)))	chr11:35684483-35684749(+)$1	1	6	18	10.7242
(.(......).)	chr1:29319858-29320108(+)$1	1	52	64	9.5322
(((......)))	chr7:98997833-98998055(-)$1	1	189	201	10.7685
(((......)))	chr3:196214111-196214383(-)$1	1	158	170	9.7221
(((......)))	chr11:129992153-129992488(+)$1	1	263	275	10.7685
(((......)))	chr20:61912565-61912782(+)$1	1	97	109	10.7685
(((......)))	chr9:139720130-139720374(+)$1	1	81	93	10.7242

#PSSM
e : 0.39	d : 0.37	c : 0.18	! : 0.04	
e : 0.39	d : 0.34	c : 0.16	! : 0.04	[ : 0.04	
e : 0.39	d : 0.34	c : 0.16	a : 0.09	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
e : 0.39	d : 0.34	c : 0.16	a : 0.09	
e : 0.39	d : 0.34	c : 0.16	2 : 0.04	] : 0.04	
e : 0.39	d : 0.37	c : 0.18	2 : 0.04	

#score	449.3828311979864
#seq	43
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_CDS_m2_run2.txt

#BEAR
ggggxxxxxxxxxxxxxxxggg	chr5:140953090-140953410(-)$1	320	227	249	18.6822
eeeeeuuuuuuuuuuuueeeee	chr22:20100957-20101310(-)$1	353	161	183	22.5251
$$ddddtttttttttttdddd5	chrX:47445263-47445554(+)$1	291	248	270	18.7630
gggggvvvvvvvvvvvvvgggg	chrX:53263724-53264071(-)$1	347	189	211	21.8636
fffffuuuuuuuuuuuufffff	chr6:30672690-30672971(-)$1	281	213	235	21.9017
:ddddvvvvvvvvvvvvvdddd	chr12:48188998-48189346(-)$1	348	144	166	20.8183
ffffxxxxxxxxxxxxxxxfff	chr12:49443921-49444169(-)$1	248	93	115	18.3843
ffffwwwwwwwwwwwwwwffff	chr17:56051773-56052164(-)$1	391	32	54	22.1115
"dddduuuuuuuuuuuudddd4	chr6:43472867-43473148(+)$1	281	227	249	22.3476
ffffxxxxxxxxxxxxxxxfff	chr12:7045613-7045884(+)$1	271	196	218	18.3843
ffff[attttttttttta]fff	chr19:55966624-55967006(-)$1	382	123	145	20.7576
ggggyyyyyyyyyyyyyyyygg	chr1:8420942-8421213(-)$1	271	28	50	21.3399
"cccxxxxxxxxxxxxxxxccc	chrM:6308-6536(+)$1	228	176	198	18.6033
d!!bbuuuuuuuuuuuubb22d	chr5:137803380-137803651(+)$1	271	93	115	21.2701
iiiiiuuuuuuuuuuuuiiiii	chr19:54657633-54657945(+)$1	312	209	231	22.0989
dd[bbuuuuuuuuuuuubbddd	chr16:28846885-28847128(+)$1	243	130	152	21.8488
eeeeyyyyyyyyyyyyyyyyee	chr1:33236633-33236873(+)$1	240	141	163	21.3435
eeeeeuuuuuuuuuuuueeeee	chr12:57110926-57111224(-)$1	298	65	87	22.5251
eeeeeuuuuuuuuuuuueeeee	chr12:49444411-49444669(-)$1	258	65	87	22.5251
====wwwwwwwwwwwwww====	chr19:15354968-15355273(-)$1	305	29	51	22.5194
"ddddtttttttttttddddee	chr19:45898701-45899020(-)$1	319	151	173	20.0640
[dddduuuuuuuuuuuudddd2	chr7:72412554-72412837(+)$1	283	214	236	22.2044
ddddxxxxxxxxxxxxxxxddd	chr1:10166196-10166645(+)$1	449	169	191	18.3639
[ddddvvvvvvvvvvvvvdddd	chr19:36212045-36212320(+)$1	275	53	75	21.9414
dddccctttttttttttccc]d	chr12:57112037-57112309(-)$1	272	38	60	20.4619
ggggxxxxxxxxxxxxxxxggg	chr12:7046029-7046386(+)$1	357	190	212	18.6822
!ddddtttttttttttdddd]i	chr12:122618002-122618329(+)$1	327	20	42	20.0612
fffffftttttttttttfffff	chr17:47375750-47376078(-)$1	328	298	320	19.6387
====wwwwwwwwwwwwww====	chr19:15355089-15355384(-)$1	295	140	162	22.5194
d[cccvvvvvvvvvvvvvccc2	chr7:139044822-139045125(+)$1	303	42	64	21.7701
eeeeevvvvvvvvvvvvveeee	chr1:155160968-155161193(-)$1	225	50	72	22.0759
ff[bbuuuuuuuuuuuubb]ff	chr16:29817953-29818260(+)$1	307	141	163	21.8994
ccccctttttttttttccc]cc	chr12:57112109-57112371(-)$1	262	173	195	20.3562
eeeccctttttttttttccc::	chr19:2248135-2248404(+)$1	269	164	186	18.6565
===bbvvvvvvvvvvvvvbb]=	chrM:3445-3702(+)$1	257	221	243	21.4473
eeeexxxxxxxxxxxxxxxeee	chr12:57919139-57919446(+)$1	307	229	251	18.6759
ggggguuuuuuuuuuuuggggg	chr5:140953282-140953652(-)$1	370	104	126	22.1941
fffffftttttttttttfffff	chr9:139728249-139728573(+)$1	324	193	215	19.6387
eeeexxxxxxxxxxxxxxxeee	chr22:18301416-18301766(-)$1	350	198	220	18.6759
:ddddvvvvvvvvvvvvvdddd	chr9:134019822-134020115(+)$1	293	110	132	20.8183
====wwwwwwwwwwwwww====	chr17:16350897-16351271(+)$1	374	179	201	22.5194
[cccvvvvvvvvvvvvvccc33	chr11:68029564-68029858(-)$1	294	225	247	21.8055
eeeeevvvvvvvvvvvvveeee	chr4:887691-887947(-)$1	256	212	234	22.0759
dd[ccctttttttttttccc]d	chr12:122260615-122260938(+)$1	323	209	231	20.4862
fffyyyyyyyyyyyyyyyyfff	chrM:8377-8591(+)$1	214	13	35	20.9742
!ddddvvvvvvvvvvvvvdddd	chr7:99161437-99161691(+)$1	254	56	78	21.9336
ggggauuuuuuuuuuuua]ggg	chr12:7045874-7046115(+)$1	241	199	221	22.9739
eeeeeuuuuuuuuuuuueeeee	chr12:57111024-57111260(-)$1	236	101	123	22.5251
#dddduuuuuuuuuuuudddd6	chr13:39587615-39587905(-)$1	290	148	170	21.8657
ff[bbwwwwwwwwwwwwwwbb3	chr1:32828321-32828579(-)$1	258	72	94	21.3061
"cccxxxxxxxxxxxxxxxccc	chrM:6356-6585(+)$1	229	128	150	18.6033
fffffuuuuuuuuuuuufffff	chr7:73011546-73011833(-)$1	287	1	23	21.9017
fffffuuuuuuuuuuuufffff	chr6:30672554-30672853(-)$1	299	95	117	21.9017
eeeexxxxxxxxxxxxxxxeee	chr12:57919246-57919527(+)$1	281	122	144	18.6759
##cccvvvvvvvvvvvvvccc5	chr16:67576593-67576992(+)$1	399	252	274	21.1558
""bbwwwwwwwwwwwwwwbb33	chr19:36223121-36223441(+)$1	320	123	145	21.3973
cccbbuuuuuuuuuuuubb]cc	chr16:2871158-2871473(+)$1	315	227	249	21.8865
eeeeyyyyyyyyyyyyyyyyee	chr16:30748617-30749008(+)$1	391	6	28	21.3435
[cccwwwwwwwwwwwwwwcccd	chr16:2811664-2811923(+)$1	259	224	246	22.5068
ddddyyyyyyyyyyyyyyyydd	chr17:7751294-7751577(+)$1	283	94	116	21.0362
eeebbtttttttttttbb]eee	chr16:30732482-30732732(+)$1	250	119	141	19.8580
ddddwwwwwwwwwwwwwwdddd	chr17:40947174-40947473(+)$1	299	24	46	22.1845
cc[bbtttttttttttbb22cc	chr1:8420300-8420569(-)$1	269	163	185	19.2818
ddddvvvvvvvvvvvvvddddd	chr5:137803451-137803734(+)$1	283	235	257	21.3046
ggggauuuuuuuuuuuua]ggg	chr12:7045929-7046178(+)$1	249	144	166	22.9739
gggggvvvvvvvvvvvvvgggg	chr3:195511626-195511912(-)$1	286	217	239	21.8636
ffffwwwwwwwwwwwwwwffff	chr12:49445576-49445839(-)$1	263	192	214	22.1115
c[ddddtttttttttttddddc	chr19:51323544-51323864(-)$1	320	239	261	20.0327
eeeeevvvvvvvvvvvvveeee	chr1:150526431-150526671(+)$1	240	112	134	22.0759
ffffwwwwwwwwwwwwwwffff	chr12:49445512-49445776(-)$1	264	129	151	22.1115
:dddduuuuuuuuuuuudddd:	chr11:45986879-45987185(-)$1	306	208	230	20.2988

#otherMatches

#Seq PSSM
UGGGUAUGCCUCCACCUCCCCC	chr5:140953090-140953410(-)$1	320	227	249	18.6822
CAGCUCAAAGUCACCACAGCUG	chr22:20100957-20101310(-)$1	353	161	183	22.5251
CAAGCCUGUUCCCUGAUGGCUC	chrX:47445263-47445554(+)$1	291	248	270	18.7630
CAGGGCCCCAACACUAUACCUU	chrX:53263724-53264071(-)$1	347	189	211	21.8636
GCAAGACCCCUGAAACACUUGU	chr6:30672690-30672971(-)$1	281	213	235	21.9017
UGUGGUUCCCUCCUUAUUCCAC	chr12:48188998-48189346(-)$1	348	144	166	20.8183
GGGGACCUUUCCUGCCCCGCCC	chr12:49443921-49444169(-)$1	248	93	115	18.3843
GCAUGAGAAGUCCAGUAAAUGU	chr17:56051773-56052164(-)$1	391	32	54	22.1115
agcaccccuaacacucagugcc	chr6:43472867-43473148(+)$1	281	227	249	22.3476
CCCCUUCCCUCCCUCUACUGGG	chr12:7045613-7045884(+)$1	271	196	218	18.3843
GCCCUCUCUCCUCACCUGUGGG	chr19:55966624-55967006(-)$1	382	123	145	20.7576
UGUUCCCCACACCCACAUCCAA	chr1:8420942-8421213(-)$1	271	28	50	21.3399
UACUUCUCCUAUCUCUCCCAGU	chrM:6308-6536(+)$1	228	176	198	18.6033
guugcuaccucuuacccguccc	chr5:137803380-137803651(+)$1	271	93	115	21.2701
agugccuccccuuugcagugcu	chr19:54657633-54657945(+)$1	312	209	231	22.0989
UGUGUAUGCCAUCCACCACCAG	chr16:28846885-28847128(+)$1	243	130	152	21.8488
GGUGCCUGCCCCCUUCUCCCCA	chr1:33236633-33236873(+)$1	240	141	163	21.3435
UCCUCCCUCCCCCAAAAGAGGA	chr12:57110926-57111224(-)$1	298	65	87	22.5251
AAGAGCCCUUCUUUUUUCUCUU	chr12:49444411-49444669(-)$1	258	65	87	22.5251
GAAGUCCUCGCCCCCACCCUUC	chr19:15354968-15355273(-)$1	305	29	51	22.5194
UGGGUCCCCCCUCUUCACCCGA	chr19:45898701-45899020(-)$1	319	151	173	20.0640
CUGGCCCUUCAGUCACAGCCAC	chr7:72412554-72412837(+)$1	283	214	236	22.2044
CACUCCCCUCAGUCCUCACAGU	chr1:10166196-10166645(+)$1	449	169	191	18.3639
AGCUGcccccuccucccccagc	chr19:36212045-36212320(+)$1	275	53	75	21.9414
ACUCCUCCCUCCCCCAAAGGAA	chr12:57112037-57112309(-)$1	272	38	60	20.4619
CGCCCUACCCUUUCCCACCGGU	chr12:7046029-7046386(+)$1	357	190	212	18.6822
CCCGUUUAUCCAGCCCACGGAC	chr12:122618002-122618329(+)$1	327	20	42	20.0612
CAUUAACAUCCGUCUCCUUAGU	chr17:47375750-47376078(-)$1	328	298	320	19.6387
GAAGUCCUCGCCCCCACCCUUC	chr19:15355089-15355384(-)$1	295	140	162	22.5194
CCGGCUCCCUUUCCGCACGCCU	chr7:139044822-139045125(+)$1	303	42	64	21.7701
gggcuccaccgcccccccagcc	chr1:155160968-155161193(-)$1	225	50	72	22.0759
GGCGGCCUCAUGAACUCCUUCC	chr16:29817953-29818260(+)$1	307	141	163	21.8994
CUCCUCCCUCCCCCAAAGGAAG	chr12:57112109-57112371(-)$1	262	173	195	20.3562
CCCGCCGUUCACCCUCAGGCCC	chr19:2248135-2248404(+)$1	269	164	186	18.6565
GUGAGCAUCAAACUCAAACUAC	chrM:3445-3702(+)$1	257	221	243	21.4473
GGGCAAUGCCCCCUCUCCAGCC	chr12:57919139-57919446(+)$1	307	229	251	18.6759
GGGUGUUUGCAUCUCCUCACCC	chr5:140953282-140953652(-)$1	370	104	126	22.1941
CCAGGGAGAGAACGGGACCCUG	chr9:139728249-139728573(+)$1	324	193	215	19.6387
GCCAAAACAUCCACCCCACUGG	chr22:18301416-18301766(-)$1	350	198	220	18.6759
UCUUUUGUUCCCCCUUCUAAAG	chr9:134019822-134020115(+)$1	293	110	132	20.8183
UCCCUUCCCUACAUCCCUGGGA	chr17:16350897-16351271(+)$1	374	179	201	22.5194
CCUCAAACACAACCCCAGAGCC	chr11:68029564-68029858(-)$1	294	225	247	21.8055
ACUUCGAAUAGUCAAUGGGAAG	chr4:887691-887947(-)$1	256	212	234	22.0759
UCUGCCCACUCCCCACUGGCCG	chr12:122260615-122260938(+)$1	323	209	231	20.4862
UGGCCCACCAUAAUUACCCCCA	chrM:8377-8591(+)$1	214	13	35	20.9742
CUCCGCCUUCCCACCACCCGGA	chr7:99161437-99161691(+)$1	254	56	78	21.9336
CCUGCCCCCACCUCACAGCCAG	chr12:7045874-7046115(+)$1	241	199	221	22.9739
UCCUCCCUCCCCCAAAAGAGGA	chr12:57111024-57111260(-)$1	236	101	123	22.5251
CGUGGCUAACUCAACUUCCACU	chr13:39587615-39587905(-)$1	290	148	170	21.8657
GAAGCACCCACCCACCUCAGCC	chr1:32828321-32828579(-)$1	258	72	94	21.3061
UACUUCUCCUAUCUCUCCCAGU	chrM:6356-6585(+)$1	229	128	150	18.6033
AGCCUCUCUUCUCUCCCAGGUU	chr7:73011546-73011833(-)$1	287	1	23	21.9017
GCAAGACCCCUGAAACACUUGU	chr6:30672554-30672853(-)$1	299	95	117	21.9017
GGGCAAUGCCCCCUCUCCAGCC	chr12:57919246-57919527(+)$1	281	122	144	18.6759
UAUGGCCCCCAGAACUCCCCAC	chr16:67576593-67576992(+)$1	399	252	274	21.1558
CUCUAAAAACCUCCCCUCAGCU	chr19:36223121-36223441(+)$1	320	123	145	21.3973
UGGCCUGUAACAAGAAUGGACU	chr16:2871158-2871473(+)$1	315	227	249	21.8865
CAGCACCACCACACCACCCCGC	chr16:30748617-30749008(+)$1	391	6	28	21.3435
UCUUCUUCUCCCACAUCUAAGA	chr16:2811664-2811923(+)$1	259	224	246	22.5068
CAGGACCCACCUCUUGUACCCC	chr17:7751294-7751577(+)$1	283	94	116	21.0362
CUGAGCCCAGCCCCACCUCCAG	chr16:30732482-30732732(+)$1	250	119	141	19.8580
AGCCCCUCUCCUUUCUCUGGCU	chr17:40947174-40947473(+)$1	299	24	46	22.1845
CCACCUCUACCCCACCGGCGGG	chr1:8420300-8420569(-)$1	269	163	185	19.2818
GCUGUCACCAACUCCUUCAGCG	chr5:137803451-137803734(+)$1	283	235	257	21.3046
CCUGCCCCCACCUCACAGCCAG	chr12:7045929-7046178(+)$1	249	144	166	22.9739
UGACACCACCCCUCUUCCUGUC	chr3:195511626-195511912(-)$1	286	217	239	21.8636
CCUCUGUCCCCUCCACCUGAGG	chr12:49445576-49445839(-)$1	263	192	214	22.1115
AGAGCUUCCCACACCCUGGCUU	chr19:51323544-51323864(-)$1	320	239	261	20.0327
CCCUAUUCCAAGAUGUUCUGGG	chr1:150526431-150526671(+)$1	240	112	134	22.0759
CCUCUGUCCCCUCCACCUGAGG	chr12:49445512-49445776(-)$1	264	129	151	22.1115
AGCCAAAACGUUCCCCAUGGCC	chr11:45986879-45987185(-)$1	306	208	230	20.2988

#DB
((((...............)))	chr5:140953090-140953410(-)$1	1	227	249	18.6822
(((((............)))))	chr22:20100957-20101310(-)$1	1	161	183	22.5251
..((((...........)))).	chrX:47445263-47445554(+)$1	1	248	270	18.7630
(((((.............))))	chrX:53263724-53264071(-)$1	1	189	211	21.8636
(((((............)))))	chr6:30672690-30672971(-)$1	1	213	235	21.9017
.((((.............))))	chr12:48188998-48189346(-)$1	1	144	166	20.8183
((((...............)))	chr12:49443921-49444169(-)$1	1	93	115	18.3843
((((..............))))	chr17:56051773-56052164(-)$1	1	32	54	22.1115
.((((............)))).	chr6:43472867-43473148(+)$1	1	227	249	22.3476
((((...............)))	chr12:7045613-7045884(+)$1	1	196	218	18.3843
((((.(...........).)))	chr19:55966624-55967006(-)$1	1	123	145	20.7576
((((................))	chr1:8420942-8421213(-)$1	1	28	50	21.3399
.(((...............)))	chrM:6308-6536(+)$1	1	176	198	18.6033
(..((............))..)	chr5:137803380-137803651(+)$1	1	93	115	21.2701
(((((............)))))	chr19:54657633-54657945(+)$1	1	209	231	22.0989
((.((............)))))	chr16:28846885-28847128(+)$1	1	130	152	21.8488
((((................))	chr1:33236633-33236873(+)$1	1	141	163	21.3435
(((((............)))))	chr12:57110926-57111224(-)$1	1	65	87	22.5251
(((((............)))))	chr12:49444411-49444669(-)$1	1	65	87	22.5251
((((..............))))	chr19:15354968-15355273(-)$1	1	29	51	22.5194
.((((...........))))))	chr19:45898701-45899020(-)$1	1	151	173	20.0640
.((((............)))).	chr7:72412554-72412837(+)$1	1	214	236	22.2044
((((...............)))	chr1:10166196-10166645(+)$1	1	169	191	18.3639
.((((.............))))	chr19:36212045-36212320(+)$1	1	53	75	21.9414
((((((...........))).)	chr12:57112037-57112309(-)$1	1	38	60	20.4619
((((...............)))	chr12:7046029-7046386(+)$1	1	190	212	18.6822
.((((...........)))).)	chr12:122618002-122618329(+)$1	1	20	42	20.0612
((((((...........)))))	chr17:47375750-47376078(-)$1	1	298	320	19.6387
((((..............))))	chr19:15355089-15355384(-)$1	1	140	162	22.5194
(.(((.............))).	chr7:139044822-139045125(+)$1	1	42	64	21.7701
(((((.............))))	chr1:155160968-155161193(-)$1	1	50	72	22.0759
((.((............)).))	chr16:29817953-29818260(+)$1	1	141	163	21.8994
(((((...........))).))	chr12:57112109-57112371(-)$1	1	173	195	20.3562
)))(((...........)))..	chr19:2248135-2248404(+)$1	1	164	186	18.6565
(((((.............)).)	chrM:3445-3702(+)$1	1	221	243	21.4473
((((...............)))	chr12:57919139-57919446(+)$1	1	229	251	18.6759
(((((............)))))	chr5:140953282-140953652(-)$1	1	104	126	22.1941
((((((...........)))))	chr9:139728249-139728573(+)$1	1	193	215	19.6387
((((...............)))	chr22:18301416-18301766(-)$1	1	198	220	18.6759
.((((.............))))	chr9:134019822-134020115(+)$1	1	110	132	20.8183
((((..............))))	chr17:16350897-16351271(+)$1	1	179	201	22.5194
.(((.............)))..	chr11:68029564-68029858(-)$1	1	225	247	21.8055
(((((.............))))	chr4:887691-887947(-)$1	1	212	234	22.0759
((.(((...........))).)	chr12:122260615-122260938(+)$1	1	209	231	20.4862
(((................)))	chrM:8377-8591(+)$1	1	13	35	20.9742
.((((.............))))	chr7:99161437-99161691(+)$1	1	56	78	21.9336
(((((............).)))	chr12:7045874-7046115(+)$1	1	199	221	22.9739
(((((............)))))	chr12:57111024-57111260(-)$1	1	101	123	22.5251
.((((............)))).	chr13:39587615-39587905(-)$1	1	148	170	21.8657
((.((..............)).	chr1:32828321-32828579(-)$1	1	72	94	21.3061
.(((...............)))	chrM:6356-6585(+)$1	1	128	150	18.6033
(((((............)))))	chr7:73011546-73011833(-)$1	1	1	23	21.9017
(((((............)))))	chr6:30672554-30672853(-)$1	1	95	117	21.9017
((((...............)))	chr12:57919246-57919527(+)$1	1	122	144	18.6759
..(((.............))).	chr16:67576593-67576992(+)$1	1	252	274	21.1558
..((..............))..	chr19:36223121-36223441(+)$1	1	123	145	21.3973
(((((............)).))	chr16:2871158-2871473(+)$1	1	227	249	21.8865
((((................))	chr16:30748617-30749008(+)$1	1	6	28	21.3435
.(((..............))))	chr16:2811664-2811923(+)$1	1	224	246	22.5068
((((................))	chr17:7751294-7751577(+)$1	1	94	116	21.0362
(((((...........)).)))	chr16:30732482-30732732(+)$1	1	119	141	19.8580
((((..............))))	chr17:40947174-40947473(+)$1	1	24	46	22.1845
((.((...........))..))	chr1:8420300-8420569(-)$1	1	163	185	19.2818
((((.............))))(	chr5:137803451-137803734(+)$1	1	235	257	21.3046
(((((............).)))	chr12:7045929-7046178(+)$1	1	144	166	22.9739
(((((.............))))	chr3:195511626-195511912(-)$1	1	217	239	21.8636
((((..............))))	chr12:49445576-49445839(-)$1	1	192	214	22.1115
(.((((...........)))))	chr19:51323544-51323864(-)$1	1	239	261	20.0327
(((((.............))))	chr1:150526431-150526671(+)$1	1	112	134	22.0759
((((..............))))	chr12:49445512-49445776(-)$1	1	129	151	22.1115
.((((............)))).	chr11:45986879-45987185(-)$1	1	208	230	20.2988

#PSSM
e : 0.19	f : 0.19	d : 0.12	g : 0.11	" : 0.07	= : 0.05	[ : 0.05	c : 0.05	: : 0.04	! : 0.02	# : 0.02	$ : 0.01	i : 0.01	
d : 0.23	e : 0.19	f : 0.19	g : 0.11	c : 0.09	= : 0.05	[ : 0.02	$ : 0.01	! : 0.01	i : 0.01	# : 0.01	" : 0.01	
d : 0.23	e : 0.19	f : 0.16	g : 0.11	c : 0.11	[ : 0.07	= : 0.05	! : 0.01	i : 0.01	b : 0.01	
d : 0.22	e : 0.16	f : 0.15	c : 0.14	b : 0.12	g : 0.11	= : 0.04	i : 0.01	y : 0.01	
d : 0.16	x : 0.14	w : 0.12	b : 0.11	e : 0.09	c : 0.08	f : 0.07	y : 0.07	g : 0.04	v : 0.02	a : 0.02	[ : 0.01	i : 0.01	
u : 0.26	v : 0.19	x : 0.14	w : 0.14	y : 0.07	t : 0.07	c : 0.04	d : 0.02	f : 0.02	a : 0.01	
u : 0.26	v : 0.19	t : 0.18	x : 0.14	w : 0.14	y : 0.07	
u : 0.26	v : 0.19	t : 0.18	x : 0.14	w : 0.14	y : 0.07	
u : 0.26	v : 0.19	t : 0.18	x : 0.14	w : 0.14	y : 0.07	
u : 0.26	v : 0.19	t : 0.18	x : 0.14	w : 0.14	y : 0.07	
u : 0.26	v : 0.19	t : 0.18	x : 0.14	w : 0.14	y : 0.07	
u : 0.26	v : 0.19	t : 0.18	x : 0.14	w : 0.14	y : 0.07	
u : 0.26	v : 0.19	t : 0.18	x : 0.14	w : 0.14	y : 0.07	
u : 0.26	v : 0.19	t : 0.18	x : 0.14	w : 0.14	y : 0.07	
u : 0.26	v : 0.19	t : 0.18	x : 0.14	w : 0.14	y : 0.07	
u : 0.26	v : 0.19	t : 0.18	x : 0.14	w : 0.14	y : 0.07	
u : 0.26	v : 0.19	x : 0.14	w : 0.14	t : 0.11	y : 0.07	d : 0.02	b : 0.02	c : 0.01	
v : 0.16	x : 0.14	w : 0.14	d : 0.12	b : 0.08	f : 0.07	y : 0.07	c : 0.07	e : 0.05	a : 0.04	i : 0.01	g : 0.01	
d : 0.19	x : 0.14	f : 0.11	c : 0.11	e : 0.09	b : 0.08	y : 0.07	] : 0.05	g : 0.04	= : 0.04	i : 0.01	w : 0.01	2 : 0.01	
d : 0.22	f : 0.16	e : 0.15	c : 0.12	g : 0.09	y : 0.05	= : 0.04	] : 0.04	b : 0.04	2 : 0.02	i : 0.01	
d : 0.21	e : 0.19	f : 0.18	g : 0.11	c : 0.11	] : 0.05	= : 0.04	3 : 0.02	2 : 0.01	i : 0.01	: : 0.01	b : 0.01	
e : 0.19	f : 0.18	d : 0.18	g : 0.11	c : 0.08	= : 0.05	3 : 0.04	5 : 0.02	i : 0.02	2 : 0.02	: : 0.02	4 : 0.01	6 : 0.01	

#score	1493.7334654408821
#seq	71
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_UTR_m1_run1.txt

#BEAR
h!!eeeeevvvvvvvvvvvvveeeee2	chr9:35754481-35754741(+)$1	260	160	187	22.9434
eeee[cccvvvvvvvvvvvvvccc]ee	chr19:3535973-3536278(+)$1	305	217	244	23.2651
###ddddvvvvvvvvvvvvvdddd444	chr1:33475272-33475518(-)$1	246	123	150	23.4222
ccceeeeewwwwwwwwwwwwwweeeee	chr2:27353628-27353957(-)$1	329	245	272	21.8576
="""ddddwwwwwwwwwwwwwwdddd=	chr1:12073073-12073319(+)$1	246	184	211	22.2249
hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr12:98942650-98942941(+)$1	291	186	213	21.3948
###eeeeeyyyyyyyyyyyyyyyyeee	chr16:85711383-85711674(-)$1	291	16	43	21.5657
ggggyyyyyyyyyyyyyyyyggggggg	chr22:22118189-22118462(-)$1	273	22	49	22.7076
dd!!dddduuuuuuuuuuuudddd22d	chr22:21802333-21802549(+)$1	216	63	90	24.2644
ddddyyyyyyyyyyyyyyyydddd444	chr12:49414839-49415144(-)$1	305	139	166	22.2238
hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr14:75598266-75598512(-)$1	246	111	138	21.3948
#cccddddtttttttttttdddd22cc	chr17:75495799-75496046(+)$1	247	25	52	22.5680
hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr17:41845177-41845433(-)$1	256	27	54	21.3948
eeeeyyyyyyyyyyyyyyyyeeeeeA{	chr19:2429542-2429799(-)$1	257	12	39	19.9859
==="""bbuuuuuuuuuuuubb333==	chr10:71910482-71910736(-)$1	254	73	100	23.8205
gggg[cccuuuuuuuuuuuuccc22gg	chr15:64974988-64975273(+)$1	285	212	239	24.7678
ddddddwwwwwwwwwwwwwwdddd22d	chr7:50659987-50660235(-)$1	248	45	72	22.0657
e"""ddddtttttttttttdddd333e	chr19:6414374-6414599(-)$1	225	67	94	23.3609
e!!cccwwwwwwwwwwwwwwccc22ee	chr3:133307585-133307837(+)$1	252	95	122	22.8962
ddfffffftttttttttttffffff]d	chr1:160966221-160966445(-)$1	224	173	200	21.2580
!!bb[cccwwwwwwwwwwwwwwcccbb	chr11:45954694-45954930(-)$1	236	35	62	21.5796
dddd[cccuuuuuuuuuuuucccdddd	chr22:19957060-19957326(+)$1	266	75	102	23.8947
+eeeeeavvvvvvvvvvvvva]eeeee	chr7:135612849-135613074(-)$1	225	44	71	22.4536
ddddyyyyyyyyyyyyyyyydddd]ee	chr22:24812500-24812743(+)$1	243	136	163	22.2868
d[fffffftttttttttttffffffdd	chr7:56078797-56079059(-)$1	262	158	185	21.3566
dddbbddddtttttttttttdddd]bb	chr2:37431175-37431421(+)$1	246	54	81	21.1634
e####ccctttttttttttccc333ee	chr16:71962541-71962808(+)$1	267	75	102	23.4785
=========ttttttttttt=======	chr1:150547155-150547399(-)$1	244	73	100	22.9720
iiiiiiiiuuuuuuuuuuuuiiiiiii	chrX:46919873-46920134(+)$1	261	183	210	24.5169
ddddyyyyyyyyyyyyyyyydddd22d	chr6:42979519-42979790(+)$1	271	35	62	22.1897
###eeeeeuuuuuuuuuuuueeeee22	chr9:134372330-134372564(+)$1	234	141	168	24.1792
ffffffwwwwwwwwwwwwwwffffff]	chr11:35829565-35829845(+)$1	280	100	127	21.0922
eeeeddddwwwwwwwwwwwwwwdddd:	chr1:228363517-228363793(+)$1	276	237	264	20.6059
+eeeeeavvvvvvvvvvvvva]eeeee	chr7:135612911-135613120(-)$1	209	90	117	22.4536
###cccbbtttttttttttbb]cccee	chr11:73964777-73965036(+)$1	259	82	109	22.2719
bb[fffffftttttttttttffffff]	chr9:137023705-137023951(+)$1	246	198	225	20.7845
ggggggwwwwwwwwwwwwwwggggggg	chr3:20025814-20026064(+)$1	250	107	134	22.5814
ddd[dddduuuuuuuuuuuudddd]dd	chr22:22117654-22117887(-)$1	233	184	211	23.9447
ebb[ddddwwwwwwwwwwwwwwddddb	chr17:25951397-25951735(+)$1	338	132	159	20.9637
####cccvvvvvvvvvvvvvccc333d	chr1:180944074-180944319(-)$1	245	16	43	24.0912
ccceeeeeuuuuuuuuuuuueeeee22	chr20:39803896-39804120(+)$1	224	127	154	23.8036
="""dddduuuuuuuuuuuudddd333	chr17:73823330-73823596(-)$1	266	30	57	25.0084
=========ttttttttttt=======	chr22:38615836-38616100(-)$1	264	45	72	22.9720
c"""dddduuuuuuuuuuuudddd22c	chr1:24121831-24122116(+)$1	285	165	192	24.5395
!!bbyyyyyyyyyyyyyyyybb333ff	chrX:129200444-129200710(-)$1	266	196	223	22.0369
$$$$ddddtttttttttttdddd333h	chr19:41829450-41829780(+)$1	330	167	194	22.4241
ggggyyyyyyyyyyyyyyyyggggggg	chr1:28299458-28299736(-)$1	278	117	144	22.7076
!ffffffwwwwwwwwwwwwwwffffff	chr20:62589007-62589280(-)$1	273	30	57	21.2077
f!!eeeeevvvvvvvvvvvvveeeee2	chr9:123524993-123525225(-)$1	232	92	119	22.9397
ffff[bbvvvvvvvvvvvvvbb]ffff	chr22:24938093-24938351(-)$1	258	104	131	21.4590
!!cccxxxxxxxxxxxxxxxccc22dd	chr4:76568191-76568421(-)$1	230	67	94	19.2252
!gggggggtttttttttttggggggg2	chr1:228286485-228286721(+)$1	236	195	222	22.6327
[gggggggtttttttttttggggggg]	chr15:69071999-69072319(-)$1	320	78	105	22.7310
ccceeeeeuuuuuuuuuuuueeeee]c	chr10:1065586-1065836(+)$1	250	104	131	23.9681
[ggggggguuuuuuuuuuuuggggggg	chr17:79640153-79640470(+)$1	317	209	236	24.3251
dddd[ddddtttttttttttdddd]dd	chr4:103717775-103718006(-)$1	231	80	107	22.1895
c[ffffffuuuuuuuuuuuuffffffc	chr15:40758812-40759073(+)$1	261	173	200	22.9705
=====xxxxxxxxxxxxxxx=======	chr1:174961585-174961835(+)$1	250	42	69	19.5319
!!eeeeevvvvvvvvvvvvveeeee22	chr16:56395865-56396126(-)$1	261	143	170	23.2329
eeee:cccyyyyyyyyyyyyyyyyccc	chr5:71501364-71501647(+)$1	283	176	203	20.2842
eeee[ccctttttttttttccc]eeee	chr1:28826060-28826348(+)$1	288	25	52	22.9644
bccc[cccwwwwwwwwwwwwwwccccc	chr1:160183671-160183942(+)$1	271	141	168	21.8929
iiiiiiiiuuuuuuuuuuuuiiiiiii	chr1:28608822-28609058(+)$1	236	73	100	24.5169

#otherMatches

#Seq PSSM
GGAUGGUUAAUCCUGUGCCCCAGCCAA	chr9:35754481-35754741(+)$1	260	160	187	22.9434
GAUUUGUUUUGUGUUUUUGUUGACUAG	chr19:3535973-3536278(+)$1	305	217	244	23.2651
AUGUGCAUAUGAGAUAAGCCUGCAACC	chr1:33475272-33475518(-)$1	246	123	150	23.4222
CCUUGAGGAAUGGGAAAAUGAACCUCA	chr2:27353628-27353957(-)$1	329	245	272	21.8576
AAAAAUUCUUUAGCGUAAACAUGAAUU	chr1:12073073-12073319(+)$1	246	184	211	22.2249
ugcagugagcagagauuacgucacugc	chr12:98942650-98942941(+)$1	291	186	213	21.3948
UUAGUCCUUAAAACUUAGCUCCCUGGG	chr16:85711383-85711674(-)$1	291	16	43	21.5657
CUUAUCCACUUUGACUCCUUUGAGCCG	chr22:22118189-22118462(-)$1	273	22	49	22.7076
CAAACCUCUGUGGUAUAGGUGAGGGGU	chr22:21802333-21802549(+)$1	216	63	90	24.2644
UGGGUUGUGUUUCCUUGUUUUCCACUC	chr12:49414839-49415144(-)$1	305	139	166	22.2238
AUGUGCUUUCCUCCAUUUUUGAGCAUA	chr14:75598266-75598512(-)$1	246	111	138	21.3948
CCCUGCCACUCACCCUUCCUGGCCCAG	chr17:75495799-75496046(+)$1	247	25	52	22.5680
AACGAAAGAAAUAUCAGGGACUUUUGU	chr17:41845177-41845433(-)$1	256	27	54	21.3948
AAUGGAUAUUUAUUUUUUUACAUUGGU	chr19:2429542-2429799(-)$1	257	12	39	19.9859
GGGAGGCAUUGUUCUUUAGUUGGAGUU	chr10:71910482-71910736(-)$1	254	73	100	23.8205
GAGGCAGCCAACAUUUCUCUGCUCUCC	chr15:64974988-64975273(+)$1	285	212	239	24.7678
CAACUCAUAUAAUACAGAAAGAGUUUU	chr7:50659987-50660235(-)$1	248	45	72	22.0657
gcgugaagaucguugccaccuuccaac	chr19:6414374-6414599(-)$1	225	67	94	23.3609
UUUUGUUUUGUUUUUGUUCUGCAUUAA	chr3:133307585-133307837(+)$1	252	95	122	22.8962
GAUGAGAUUUUUAAAGUAUGUUUCAGU	chr1:160966221-160966445(-)$1	224	173	200	21.2580
CUGACACCAAGAACAGCCAGUAGGUUC	chr11:45954694-45954930(-)$1	236	35	62	21.5796
GCUGAGUUCACCUGCACCGAGACCAGC	chr22:19957060-19957326(+)$1	266	75	102	23.8947
UGAGUCCUUUUUUUAAUCCUGUGGCUU	chr7:135612849-135613074(-)$1	225	44	71	22.4536
GCAGUUCCCAACUUUAUCCCUUGCUGG	chr22:24812500-24812743(+)$1	243	136	163	22.2868
UAUUUGUAGCUAUAUUUCAUACAAAGU	chr7:56078797-56079059(-)$1	262	158	185	21.3566
ACAGCUGUAUaauacacauuugcaugc	chr2:37431175-37431421(+)$1	246	54	81	21.1634
AUUCAUGGAACCUUUAAAACUAAUCUC	chr16:71962541-71962808(+)$1	267	75	102	23.4785
AAAUCCUCCAAAAGGGAAAGGGAGGAU	chr1:150547155-150547399(-)$1	244	73	100	22.9720
ACAUGUGUAAACAUGCCAUAGCAUGUG	chrX:46919873-46920134(+)$1	261	183	210	24.5169
GGGUUGUAUUAUUUCUUCUUACCCCAU	chr6:42979519-42979790(+)$1	271	35	62	22.1897
ACUGGGAGUUUGUCCUUUUCCUCCUUU	chr9:134372330-134372564(+)$1	234	141	168	24.1792
GGAAGCUCCCAGGCAUAUAUGCUUCUA	chr11:35829565-35829845(+)$1	280	100	127	21.0922
UACACAUCGAGAAGCACACAGGGAUGA	chr1:228363517-228363793(+)$1	276	237	264	20.6059
UGAGUCCUUUUUUUAAUCCUGUGGCUU	chr7:135612911-135613120(-)$1	209	90	117	22.4536
UACUGAGCCCCUCUUCCUAGCAUCAGG	chr11:73964777-73965036(+)$1	259	82	109	22.2719
AGGAGGUGCUGAGGCUGGCUGCACCUG	chr9:137023705-137023951(+)$1	246	198	225	20.7845
UGGGGUAAAAAUCAAAUGCAACCCCAU	chr3:20025814-20026064(+)$1	250	107	134	22.5814
GACAUUUGGUGAGAGAAGUACAAAGGU	chr22:22117654-22117887(-)$1	233	184	211	23.9447
CAGAGCCUUCCUUAGCACCAUUAGGCC	chr17:25951397-25951735(+)$1	338	132	159	20.9637
CUUUGACUUCUCAUUUCCUUGUCUUUU	chr1:180944074-180944319(-)$1	245	16	43	24.0912
CUUUCCCUGAGGAAUGAAAAAGGGAUU	chr20:39803896-39804120(+)$1	224	127	154	23.8036
UGGUGGCCAUUACUAGAGGGGGCCUGG	chr17:73823330-73823596(-)$1	266	30	57	25.0084
UGGUAGGGUAAGGGAGAGGGACCCUGC	chr22:38615836-38616100(-)$1	264	45	72	22.9720
AUUCCGAUAAAAUUAAAGAAAUUGCUU	chr1:24121831-24122116(+)$1	285	165	192	24.5395
CAUCAGACUAUGGCCUUCAAGAGCACU	chrX:129200444-129200710(-)$1	266	196	223	22.0369
AUCAUGGGUCCUGAGUCAUCCCACACA	chr19:41829450-41829780(+)$1	330	167	194	22.4241
GCUUCUCAAAUCCCAUUCUAAAGUAGG	chr1:28299458-28299736(-)$1	278	117	144	22.7076
AGCCGGAGGUGGAGGGUGGGGUCUGGC	chr20:62589007-62589280(-)$1	273	30	57	21.2077
UCACAGACCAAUAGGAAGGUAGUUUGA	chr9:123524993-123525225(-)$1	232	92	119	22.9397
CAGCAGUGCUCUGGGAAUAAACAGCUG	chr22:24938093-24938351(-)$1	258	104	131	21.4590
CCAUGAAUAAAACAUUAAAACAUCAUA	chr4:76568191-76568421(-)$1	230	67	94	19.2252
CGAAAAAGACAACCUCUACUUUUUUCU	chr1:228286485-228286721(+)$1	236	195	222	22.6327
GGGUGGAAUAAAAUACUAUUUUUACUG	chr15:69071999-69072319(-)$1	320	78	105	22.7310
ACAAAUUUCAUGCUCUCCCCAAAUUCU	chr10:1065586-1065836(+)$1	250	104	131	23.9681
aggucaggaguucgaaccagccuggcc	chr17:79640153-79640470(+)$1	317	209	236	24.3251
AACAUUUUGUAAUUUUCAUUUAAAUUG	chr4:103717775-103718006(-)$1	231	80	107	22.1895
UGUGGGAGUCUCCUGUCCACCUCCCAG	chr15:40758812-40759073(+)$1	261	173	200	22.9705
UUGAGUUUUCUUUUAGCUCUUUCAAAA	chr1:174961585-174961835(+)$1	250	42	69	19.5319
UUGGUCCUUGAACAAGAUGUGGGCCUU	chr16:56395865-56396126(-)$1	261	143	170	23.2329
GGUGGGGUAAGGAGGAGAAAAUAAACC	chr5:71501364-71501647(+)$1	283	176	203	20.2842
ggcucaagcaauccucccacuucaguc	chr1:28826060-28826348(+)$1	288	25	52	22.9644
CAGGUCCCUUUUUGUCUCUCAUGGGCC	chr1:160183671-160183942(+)$1	271	141	168	21.8929
ACUGGGUGGGUAGGGAGUGGUAUCCAG	chr1:28608822-28609058(+)$1	236	73	100	24.5169

#DB
(..(((((.............))))).	chr9:35754481-35754741(+)$1	1	160	187	22.9434
((((.(((.............))).))	chr19:3535973-3536278(+)$1	1	217	244	23.2651
...((((.............))))...	chr1:33475272-33475518(-)$1	1	123	150	23.4222
)))(((((..............)))))	chr2:27353628-27353957(-)$1	1	245	272	21.8576
(...((((..............)))))	chr1:12073073-12073319(+)$1	1	184	211	22.2249
((((((((............)))))))	chr12:98942650-98942941(+)$1	1	186	213	21.3948
...(((((................)))	chr16:85711383-85711674(-)$1	1	16	43	21.5657
((((................)))))))	chr22:22118189-22118462(-)$1	1	22	49	22.7076
((..((((............))))..)	chr22:21802333-21802549(+)$1	1	63	90	24.2644
((((................))))...	chr12:49414839-49415144(-)$1	1	139	166	22.2238
((((((((............)))))))	chr14:75598266-75598512(-)$1	1	111	138	21.3948
.(((((((...........))))..))	chr17:75495799-75496046(+)$1	1	25	52	22.5680
((((((((............)))))))	chr17:41845177-41845433(-)$1	1	27	54	21.3948
((((................)))))(.	chr19:2429542-2429799(-)$1	1	12	39	19.9859
(((...((............))...))	chr10:71910482-71910736(-)$1	1	73	100	23.8205
((((.(((............)))..))	chr15:64974988-64975273(+)$1	1	212	239	24.7678
((((((..............))))..)	chr7:50659987-50660235(-)$1	1	45	72	22.0657
(...((((...........))))...)	chr19:6414374-6414599(-)$1	1	67	94	23.3609
(..(((..............)))..))	chr3:133307585-133307837(+)$1	1	95	122	22.8962
((((((((...........)))))).)	chr1:160966221-160966445(-)$1	1	173	200	21.2580
..((.(((..............)))))	chr11:45954694-45954930(-)$1	1	35	62	21.5796
((((.(((............)))))))	chr22:19957060-19957326(+)$1	1	75	102	23.8947
.((((((.............).)))))	chr7:135612849-135613074(-)$1	1	44	71	22.4536
((((................)))).))	chr22:24812500-24812743(+)$1	1	136	163	22.2868
(.((((((...........))))))))	chr7:56078797-56079059(-)$1	1	158	185	21.3566
)))((((((...........)))).))	chr2:37431175-37431421(+)$1	1	54	81	21.1634
(....(((...........)))...))	chr16:71962541-71962808(+)$1	1	75	102	23.4785
(((((((((...........)))))))	chr1:150547155-150547399(-)$1	1	73	100	22.9720
((((((((............)))))))	chrX:46919873-46920134(+)$1	1	183	210	24.5169
((((................))))..)	chr6:42979519-42979790(+)$1	1	35	62	22.1897
...(((((............)))))..	chr9:134372330-134372564(+)$1	1	141	168	24.1792
((((((..............)))))).	chr11:35829565-35829845(+)$1	1	100	127	21.0922
))))((((..............)))).	chr1:228363517-228363793(+)$1	1	237	264	20.6059
.((((((.............).)))))	chr7:135612911-135613120(-)$1	1	90	117	22.4536
...(((((...........)).)))))	chr11:73964777-73965036(+)$1	1	82	109	22.2719
((.((((((...........)))))).	chr9:137023705-137023951(+)$1	1	198	225	20.7845
((((((..............)))))))	chr3:20025814-20026064(+)$1	1	107	134	22.5814
(((.((((............)))).))	chr22:22117654-22117887(-)$1	1	184	211	23.9447
(((.((((..............)))))	chr17:25951397-25951735(+)$1	1	132	159	20.9637
....(((.............)))...)	chr1:180944074-180944319(-)$1	1	16	43	24.0912
((((((((............)))))..	chr20:39803896-39804120(+)$1	1	127	154	23.8036
(...((((............))))...	chr17:73823330-73823596(-)$1	1	30	57	25.0084
(((((((((...........)))))))	chr22:38615836-38616100(-)$1	1	45	72	22.9720
(...((((............))))..)	chr1:24121831-24122116(+)$1	1	165	192	24.5395
..((................))...))	chrX:129200444-129200710(-)$1	1	196	223	22.0369
....((((...........))))...)	chr19:41829450-41829780(+)$1	1	167	194	22.4241
((((................)))))))	chr1:28299458-28299736(-)$1	1	117	144	22.7076
.((((((..............))))))	chr20:62589007-62589280(-)$1	1	30	57	21.2077
(..(((((.............))))).	chr9:123524993-123525225(-)$1	1	92	119	22.9397
((((.((.............)).))))	chr22:24938093-24938351(-)$1	1	104	131	21.4590
..(((...............)))..))	chr4:76568191-76568421(-)$1	1	67	94	19.2252
.(((((((...........))))))).	chr1:228286485-228286721(+)$1	1	195	222	22.6327
.(((((((...........))))))).	chr15:69071999-69072319(-)$1	1	78	105	22.7310
((((((((............))))).)	chr10:1065586-1065836(+)$1	1	104	131	23.9681
.(((((((............)))))))	chr17:79640153-79640470(+)$1	1	209	236	24.3251
((((.((((...........)))).))	chr4:103717775-103718006(-)$1	1	80	107	22.1895
(.((((((............)))))))	chr15:40758812-40759073(+)$1	1	173	200	22.9705
(((((...............)))))))	chr1:174961585-174961835(+)$1	1	42	69	19.5319
..(((((.............)))))..	chr16:56395865-56396126(-)$1	1	143	170	23.2329
)))).(((................)))	chr5:71501364-71501647(+)$1	1	176	203	20.2842
((((.(((...........))).))))	chr1:28826060-28826348(+)$1	1	25	52	22.9644
((((.(((..............)))))	chr1:160183671-160183942(+)$1	1	141	168	21.8929
((((((((............)))))))	chr1:28608822-28609058(+)$1	1	73	100	24.5169

#PSSM
d : 0.17	e : 0.14	# : 0.09	= : 0.09	! : 0.09	c : 0.07	h : 0.06	g : 0.06	f : 0.04	+ : 0.03	i : 0.03	b : 0.03	[ : 0.03	$ : 0.01	
d : 0.15	! : 0.11	e : 0.11	g : 0.11	# : 0.09	c : 0.07	" : 0.06	= : 0.06	h : 0.04	f : 0.04	[ : 0.03	i : 0.03	b : 0.03	$ : 0.01	
e : 0.12	d : 0.12	g : 0.11	# : 0.09	c : 0.09	f : 0.09	! : 0.06	" : 0.06	= : 0.06	h : 0.04	b : 0.04	i : 0.03	[ : 0.01	$ : 0.01	
e : 0.23	d : 0.11	g : 0.11	f : 0.11	" : 0.07	c : 0.07	h : 0.04	b : 0.04	= : 0.04	# : 0.03	i : 0.03	[ : 0.03	! : 0.01	$ : 0.01	
d : 0.19	e : 0.15	[ : 0.12	y : 0.11	f : 0.09	c : 0.06	g : 0.06	h : 0.04	= : 0.04	i : 0.03	" : 0.01	b : 0.01	# : 0.01	: : 0.01	
d : 0.22	c : 0.17	e : 0.15	y : 0.11	f : 0.09	g : 0.06	h : 0.04	= : 0.03	i : 0.03	x : 0.03	" : 0.01	b : 0.01	
d : 0.20	c : 0.14	e : 0.12	y : 0.11	f : 0.07	w : 0.06	h : 0.04	b : 0.04	g : 0.04	a : 0.03	= : 0.03	i : 0.03	x : 0.03	
d : 0.19	c : 0.12	e : 0.11	y : 0.11	v : 0.09	w : 0.07	f : 0.06	h : 0.04	g : 0.04	b : 0.03	= : 0.03	i : 0.03	x : 0.03	
u : 0.26	w : 0.17	t : 0.15	v : 0.14	y : 0.14	d : 0.03	= : 0.03	x : 0.03	f : 0.01	
u : 0.26	t : 0.23	w : 0.17	v : 0.14	y : 0.14	x : 0.03	
u : 0.26	t : 0.23	w : 0.17	v : 0.14	y : 0.14	x : 0.03	
u : 0.26	t : 0.23	w : 0.17	v : 0.14	y : 0.14	x : 0.03	
u : 0.26	t : 0.23	w : 0.17	v : 0.14	y : 0.14	x : 0.03	
u : 0.26	t : 0.23	w : 0.17	v : 0.14	y : 0.14	x : 0.03	
u : 0.26	t : 0.23	w : 0.17	v : 0.14	y : 0.14	x : 0.03	
u : 0.26	t : 0.23	w : 0.17	v : 0.14	y : 0.14	x : 0.03	
u : 0.26	t : 0.23	w : 0.17	v : 0.14	y : 0.14	x : 0.03	
u : 0.26	t : 0.23	w : 0.17	v : 0.14	y : 0.14	x : 0.03	
u : 0.26	t : 0.23	w : 0.17	v : 0.14	y : 0.14	x : 0.03	
u : 0.26	w : 0.17	v : 0.14	y : 0.14	t : 0.07	d : 0.04	f : 0.03	c : 0.03	x : 0.03	g : 0.03	b : 0.01	
d : 0.22	w : 0.11	c : 0.11	g : 0.09	e : 0.07	f : 0.07	b : 0.06	v : 0.04	h : 0.04	= : 0.04	y : 0.03	a : 0.03	i : 0.03	
d : 0.22	c : 0.12	e : 0.11	w : 0.09	g : 0.09	f : 0.09	h : 0.04	b : 0.04	] : 0.04	= : 0.04	y : 0.03	i : 0.03	
d : 0.26	e : 0.15	c : 0.14	g : 0.09	f : 0.09	h : 0.04	3 : 0.04	= : 0.04	y : 0.03	i : 0.03	] : 0.03	
d : 0.23	e : 0.17	f : 0.11	g : 0.09	3 : 0.09	c : 0.06	2 : 0.06	h : 0.04	= : 0.04	y : 0.03	i : 0.03	
e : 0.19	2 : 0.12	3 : 0.11	f : 0.11	g : 0.09	] : 0.07	d : 0.06	c : 0.06	h : 0.04	= : 0.04	4 : 0.03	i : 0.03	
e : 0.19	d : 0.12	g : 0.11	2 : 0.11	f : 0.09	= : 0.06	3 : 0.06	h : 0.04	c : 0.04	4 : 0.03	] : 0.03	b : 0.03	i : 0.03	A : 0.01	
e : 0.17	d : 0.15	2 : 0.09	c : 0.09	= : 0.07	g : 0.07	h : 0.06	b : 0.04	] : 0.04	f : 0.04	4 : 0.03	i : 0.03	{ : 0.01	: : 0.01	3 : 0.01	

#score	1417.8094124397314
#seq	63
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF514NWO_TROVE2_transcript_m3_run1.txt

#BEAR
dddnnnnndddd	chr1:240504639-240504868(+)$1	229	83	95	10.6457
eeennnnneeee	chr7:99928304-99928540(-)$1	236	193	205	9.8285
eeennnnneeee	chr14:56535070-56535275(+)$1	205	88	100	9.8285
dddnnnnndddd	chr11:107955587-107955826(+)$1	239	176	188	10.6457
dddnnnnndddd	chr1:156453811-156454074(-)$1	263	130	142	10.6457
eeennnnneeee	chr4:158689064-158689303(-)$1	239	11	23	9.8285
dbbnnnnnbb]d	chr12:100651362-100651648(-)$1	286	207	219	8.6035
dddnnnnndddd	chr22:22221713-22221952(-)$1	239	175	187	10.6457
dddnnnnndddd	chr13:61363658-61363894(+)$1	236	3	15	10.6457
eeennnnneeee	chr16:70514461-70514718(-)$1	257	147	159	9.8285
cccnnnnnccc]	chr9:19378796-19379003(-)$1	207	52	64	9.3630
eeannnnna]ee	chr9:130551963-130552204(+)$1	241	209	221	9.4372
dddnnnnndddd	chr11:65402390-65402690(+)$1	300	83	95	10.6457
[bbnnnnnbb]d	chrX:64905275-64905484(+)$1	209	143	155	8.3211
dddnnnnndddd	chr5:64018231-64018453(-)$1	222	184	196	10.6457
eeennnnneeee	chr22:37409224-37409442(+)$1	218	70	82	9.8285
eeennnnneeee	chr2:207024460-207024682(+)$1	222	144	156	9.8285
dddnnnnndddd	chr6:53383340-53383567(-)$1	227	211	223	10.6457
dddnnnnndddd	chr22:22221752-22221964(-)$1	212	187	199	10.6457
dddnnnnndddd	chr9:95032104-95032318(-)$1	214	80	92	10.6457
dddnnnnndddd	chr16:70514518-70514724(-)$1	206	97	109	10.6457
===nnnnn====	chr1:115033318-115033522(+)$1	204	137	149	9.2496
eeennnnneeee	chr9:19378783-19378993(-)$1	210	119	131	9.8285
dddnnnnndddd	chr10:128609278-128609514(+)$1	236	216	228	10.6457
dddnnnnndddd	chrX:65238680-65238901(+)$1	221	197	209	10.6457
eeennnnneeee	chr9:19378793-19378996(-)$1	203	122	134	9.8285
cccnnnnnccc2	chr1:38471025-38471283(-)$1	258	101	113	9.1540
dddnnnnndddd	chr7:37474680-37474917(+)$1	237	184	196	10.6457
cccnnnnnccc2	chr5:56464837-56465074(-)$1	237	203	215	9.1540
cccnnnnncccd	chr8:101197290-101197573(+)$1	283	20	32	9.6565
[bbnnnnnbbee	chr13:92003237-92003449(+)$1	212	49	61	8.4079
eeennnnneeee	chr5:172681093-172681323(-)$1	230	22	34	9.8285
d[annnnna]dd	chr15:101178525-101178771(+)$1	246	46	58	9.6131
===nnnnn====	chr1:115033337-115033548(+)$1	211	118	130	9.2496
cccnnnnnccc]	chr1:38464955-38465202(-)$1	247	216	228	9.3630
cccnnnnnccc]	chr8:48874560-48874774(+)$1	214	123	135	9.3630
dddnnnnndddd	chr18:28962249-28962501(+)$1	252	78	90	10.6457
dddnnnnndddd	chr1:153758144-153758361(-)$1	217	6	18	10.6457
cccnnnnncccd	chr14:64088453-64088688(+)$1	235	212	224	9.6565
dddnnnnndddd	chrM:4319-4542(+)$1	223	93	105	10.6457
dddnnnnndddd	chr16:89023462-89023707(-)$1	245	190	202	10.6457
===nnnnn====	chr2:130940245-130940449(+)$1	204	127	139	9.2496
dddnnnnndddd	chr7:10941551-10941768(+)$1	217	10	22	10.6457
gggnnnnngggg	chr13:50482742-50482956(-)$1	214	174	186	8.9623
eeennnnneeee	chr14:50058874-50059097(-)$1	223	197	209	9.8285
gggnnnnngggg	chr3:131221473-131221718(-)$1	245	204	216	8.9623

#otherMatches

#Seq PSSM
aacugcucguuc	chr1:240504639-240504868(+)$1	229	83	95	10.6457
CUAGUAAAUAGC	chr7:99928304-99928540(-)$1	236	193	205	9.8285
AGggcuggucug	chr14:56535070-56535275(+)$1	205	88	100	9.8285
cagaguugcugu	chr11:107955587-107955826(+)$1	239	176	188	10.6457
aacuccuuguuc	chr1:156453811-156454074(-)$1	263	130	142	10.6457
AGUCUAUAAUUC	chr4:158689064-158689303(-)$1	239	11	23	9.8285
guggcucacauc	chr12:100651362-100651648(-)$1	286	207	219	8.6035
AGCGUCGAGCUC	chr22:22221713-22221952(-)$1	239	175	187	10.6457
aguauucagcua	chr13:61363658-61363894(+)$1	236	3	15	10.6457
UAGACAACUUGG	chr16:70514461-70514718(-)$1	257	147	159	9.8285
AUAGUAAAUGUG	chr9:19378796-19379003(-)$1	207	52	64	9.3630
UGCGUGGGGACA	chr9:130551963-130552204(+)$1	241	209	221	9.4372
CCUGUUCAAGGG	chr11:65402390-65402690(+)$1	300	83	95	10.6457
ucagaacuuguu	chrX:64905275-64905484(+)$1	209	143	155	8.3211
GCUACAAAGGCA	chr5:64018231-64018453(-)$1	222	184	196	10.6457
cugaucaccagu	chr22:37409224-37409442(+)$1	218	70	82	9.8285
CGGUCUCUUCGG	chr2:207024460-207024682(+)$1	222	144	156	9.8285
GAUUUAGUGUcu	chr6:53383340-53383567(-)$1	227	211	223	10.6457
AGCGUCGAGCUC	chr22:22221752-22221964(-)$1	212	187	199	10.6457
AGUGCCCAGCUG	chr9:95032104-95032318(-)$1	214	80	92	10.6457
GAUGGUCAGUCU	chr16:70514518-70514724(-)$1	206	97	109	10.6457
aaaaaguauuua	chr1:115033318-115033522(+)$1	204	137	149	9.2496
UUCCCCAUGAAG	chr9:19378783-19378993(-)$1	210	119	131	9.8285
guggcucacacc	chr10:128609278-128609514(+)$1	236	216	228	10.6457
GCUCACCAAGCA	chrX:65238680-65238901(+)$1	221	197	209	10.6457
UUCCCCAUGAAG	chr9:19378793-19378996(-)$1	203	122	134	9.8285
GCCCACACGGUC	chr1:38471025-38471283(-)$1	258	101	113	9.1540
GGAACAAAUCCA	chr7:37474680-37474917(+)$1	237	184	196	10.6457
auugacaaagua	chr5:56464837-56465074(-)$1	237	203	215	9.1540
ccuaccacaggg	chr8:101197290-101197573(+)$1	283	20	32	9.6565
AUCUGCCUGGUC	chr13:92003237-92003449(+)$1	212	49	61	8.4079
GCCCCACUGGug	chr5:172681093-172681323(-)$1	230	22	34	9.8285
aguccaaaggua	chr15:101178525-101178771(+)$1	246	46	58	9.6131
aaaaaguauuua	chr1:115033337-115033548(+)$1	211	118	130	9.2496
CAAUACCUUUGC	chr1:38464955-38465202(-)$1	247	216	228	9.3630
CCAAGAAGUGGU	chr8:48874560-48874774(+)$1	214	123	135	9.3630
uugcaggucaag	chr18:28962249-28962501(+)$1	252	78	90	10.6457
ugcugcuugcag	chr1:153758144-153758361(-)$1	217	6	18	10.6457
cuguuauucagg	chr14:64088453-64088688(+)$1	235	212	224	9.6565
GCUAAAUAAGCU	chrM:4319-4542(+)$1	223	93	105	10.6457
GGCCUGAAGCCC	chr16:89023462-89023707(-)$1	245	190	202	10.6457
GCCCCAGUGGCG	chr2:130940245-130940449(+)$1	204	127	139	9.2496
agacuccaucuc	chr7:10941551-10941768(+)$1	217	10	22	10.6457
ugaauggcuuaa	chr13:50482742-50482956(-)$1	214	174	186	8.9623
UUAAAAAAUAAG	chr14:50058874-50059097(-)$1	223	197	209	9.8285
UGGUGCAGUUGG	chr3:131221473-131221718(-)$1	245	204	216	8.9623

#DB
(((.....))))	chr1:240504639-240504868(+)$1	1	83	95	10.6457
(((.....))))	chr7:99928304-99928540(-)$1	1	193	205	9.8285
(((.....))))	chr14:56535070-56535275(+)$1	1	88	100	9.8285
(((.....))))	chr11:107955587-107955826(+)$1	1	176	188	10.6457
(((.....))))	chr1:156453811-156454074(-)$1	1	130	142	10.6457
(((.....))))	chr4:158689064-158689303(-)$1	1	11	23	9.8285
(((.....)).)	chr12:100651362-100651648(-)$1	1	207	219	8.6035
(((.....))))	chr22:22221713-22221952(-)$1	1	175	187	10.6457
(((.....))))	chr13:61363658-61363894(+)$1	1	3	15	10.6457
(((.....))))	chr16:70514461-70514718(-)$1	1	147	159	9.8285
(((.....))).	chr9:19378796-19379003(-)$1	1	52	64	9.3630
(((.....).))	chr9:130551963-130552204(+)$1	1	209	221	9.4372
(((.....))))	chr11:65402390-65402690(+)$1	1	83	95	10.6457
.((.....)).)	chrX:64905275-64905484(+)$1	1	143	155	8.3211
(((.....))))	chr5:64018231-64018453(-)$1	1	184	196	10.6457
(((.....))))	chr22:37409224-37409442(+)$1	1	70	82	9.8285
(((.....))))	chr2:207024460-207024682(+)$1	1	144	156	9.8285
(((.....))))	chr6:53383340-53383567(-)$1	1	211	223	10.6457
(((.....))))	chr22:22221752-22221964(-)$1	1	187	199	10.6457
(((.....))))	chr9:95032104-95032318(-)$1	1	80	92	10.6457
(((.....))))	chr16:70514518-70514724(-)$1	1	97	109	10.6457
(((.....))))	chr1:115033318-115033522(+)$1	1	137	149	9.2496
(((.....))))	chr9:19378783-19378993(-)$1	1	119	131	9.8285
(((.....))))	chr10:128609278-128609514(+)$1	1	216	228	10.6457
(((.....))))	chrX:65238680-65238901(+)$1	1	197	209	10.6457
(((.....))))	chr9:19378793-19378996(-)$1	1	122	134	9.8285
(((.....))).	chr1:38471025-38471283(-)$1	1	101	113	9.1540
(((.....))))	chr7:37474680-37474917(+)$1	1	184	196	10.6457
(((.....))).	chr5:56464837-56465074(-)$1	1	203	215	9.1540
(((.....)))(	chr8:101197290-101197573(+)$1	1	20	32	9.6565
.((.....))))	chr13:92003237-92003449(+)$1	1	49	61	8.4079
(((.....))))	chr5:172681093-172681323(-)$1	1	22	34	9.8285
(.(.....).))	chr15:101178525-101178771(+)$1	1	46	58	9.6131
(((.....))))	chr1:115033337-115033548(+)$1	1	118	130	9.2496
(((.....))).	chr1:38464955-38465202(-)$1	1	216	228	9.3630
(((.....))).	chr8:48874560-48874774(+)$1	1	123	135	9.3630
(((.....))))	chr18:28962249-28962501(+)$1	1	78	90	10.6457
(((.....))))	chr1:153758144-153758361(-)$1	1	6	18	10.6457
(((.....))))	chr14:64088453-64088688(+)$1	1	212	224	9.6565
(((.....))))	chrM:4319-4542(+)$1	1	93	105	10.6457
(((.....))))	chr16:89023462-89023707(-)$1	1	190	202	10.6457
(((.....))))	chr2:130940245-130940449(+)$1	1	127	139	9.2496
(((.....))))	chr7:10941551-10941768(+)$1	1	10	22	10.6457
(((.....))))	chr13:50482742-50482956(-)$1	1	174	186	8.9623
(((.....))))	chr14:50058874-50059097(-)$1	1	197	209	9.8285
(((.....))))	chr3:131221473-131221718(-)$1	1	204	216	8.9623

#PSSM
d : 0.45	e : 0.23	c : 0.15	= : 0.06	[ : 0.04	g : 0.04	
d : 0.41	e : 0.23	c : 0.15	b : 0.06	= : 0.06	g : 0.04	[ : 0.02	
d : 0.41	e : 0.21	c : 0.15	b : 0.06	= : 0.06	a : 0.04	g : 0.04	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
d : 0.41	e : 0.21	c : 0.15	b : 0.06	= : 0.06	a : 0.04	g : 0.04	
d : 0.41	e : 0.21	c : 0.15	b : 0.06	= : 0.06	] : 0.04	g : 0.04	
d : 0.43	e : 0.26	c : 0.15	= : 0.06	] : 0.04	g : 0.04	
d : 0.52	e : 0.26	] : 0.06	= : 0.06	2 : 0.04	g : 0.04	

#score	456.3231452930176
#seq	46
#width	12
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF800XSC_GNL3_transcript_m2_run2.txt

#BEAR
hhhh!!ddddmmmmdddd22hhhhh	chr6:27792114-27792355(+)$1	241	49	74	10.1095
&&a[ccc[ccclllccc22ccc]a9	chr10:128256276-128256488(-)$1	212	140	165	8.6167
fffff[cccmmmmcccffffff333	chr7:103029306-103029512(-)$1	206	112	137	8.3384
e[ccc[ddddmmmmdddd]ccc22e	chr3:193373476-193373688(+)$1	212	173	198	11.7131
:a[cccddddmmmmdddd]ccc]aJ	chrM:9852-10078(+)$1	226	113	138	8.7349
ffff"""cccrrrrrrrrrccc22f	chrM:488-713(+)$1	225	131	156	8.3217
ggggg!!ddddllldddd666666g	chr6:31958179-31958384(+)$1	205	123	148	9.1281
gggg"""ddddlllddddggggggg	chr11:106689580-106689788(-)$1	208	168	193	11.5285
ggggggddddmmmmdddd22ggggg	chr15:74222553-74222761(+)$1	208	13	38	11.3890
###bb[ddddmmmmdddd]bbhhhh	chr14:102706557-102706760(-)$1	203	54	79	9.8616
ggggggddddmmmmdddd22ggggg	chr15:74222561-74222772(+)$1	211	5	30	11.3890
e[bb[ddddoooooodddd]bb]ee	chr14:32954185-32954427(+)$1	242	41	66	7.9521
gggg"""ddddlllddddggggggg	chr11:106689567-106689780(-)$1	213	160	185	11.5285
gg$$$$$cccmmmmccc4444gggg	chr9:139565014-139565228(+)$1	214	70	95	10.6940
ffff"""cccrrrrrrrrrccc22f	chrM:516-721(+)$1	205	103	128	8.3217
&&a[ccc[ccclllccc22ccc]a9	chr10:128256267-128256476(-)$1	209	128	153	8.6167
gg$$$$$cccmmmmccc4444gggg	chr9:139565003-139565214(+)$1	211	81	106	10.6940
fffff[cccmmmmcccffffff333	chr7:103029312-103029525(-)$1	213	125	150	8.3384

#otherMatches

#Seq PSSM
GUCUACGCGCUCAAGCGCCAGGGCC	chr6:27792114-27792355(+)$1	241	49	74	10.1095
UUCUCCACCUGCUCCAGUCUGGCGU	chr10:128256276-128256488(-)$1	212	140	165	8.6167
ACUUUAGGUGUAGACCAAAGUUUAA	chr7:103029306-103029512(-)$1	206	112	137	8.3384
GUCAAUGUUAAAAGUAAUUUUGUUU	chr3:193373476-193373688(+)$1	212	173	198	11.7131
UGUCUCCAUCUAUUGAUGAGGGUCU	chrM:9852-10078(+)$1	226	113	138	8.7349
UUUAGACGGGCUCACAUCACCCCAU	chrM:488-713(+)$1	225	131	156	8.3217
ccaccuguaggguaccugaagucug	chr6:31958179-31958384(+)$1	205	123	148	9.1281
gagaucuaaggccgccuuucucugg	chr11:106689580-106689788(-)$1	208	168	193	11.5285
GGCCCUCCCUGUCAGGGGCUAGGGC	chr15:74222553-74222761(+)$1	208	13	38	11.3890
acuggucucccgaaggaguccuccu	chr14:102706557-102706760(-)$1	203	54	79	9.8616
GGCCCUCCCUGUCAGGGGCUAGGGC	chr15:74222561-74222772(+)$1	211	5	30	11.3890
UGGGUUUAAGUCCAAUUGAUCUAGU	chr14:32954185-32954427(+)$1	242	41	66	7.9521
gagaucuaaggccgccuuucucugg	chr11:106689567-106689780(-)$1	213	160	185	11.5285
CGCGCUGUGACACUUCAAACUCGUA	chr9:139565014-139565228(+)$1	214	70	95	10.6940
UUUAGACGGGCUCACAUCACCCCAU	chrM:516-721(+)$1	205	103	128	8.3217
UUCUCCACCUGCUCCAGUCUGGCGU	chr10:128256267-128256476(-)$1	209	128	153	8.6167
CGCGCUGUGACACUUCAAACUCGUA	chr9:139565003-139565214(+)$1	211	81	106	10.6940
ACUUUAGGUGUAGACCAAAGUUUAA	chr7:103029312-103029525(-)$1	213	125	150	8.3384

#DB
((((..((((....))))..)))))	chr6:27792114-27792355(+)$1	1	49	74	10.1095
..(.(((.(((...)))..))).).	chr10:128256276-128256488(-)$1	1	140	165	8.6167
(((((.(((....)))))))))...	chr7:103029306-103029512(-)$1	1	112	137	8.3384
(.(((.((((....)))).)))..)	chr3:193373476-193373688(+)$1	1	173	198	11.7131
.(.(((((((....)))).))).)(	chrM:9852-10078(+)$1	1	113	138	8.7349
((((...(((.........)))..)	chrM:488-713(+)$1	1	131	156	8.3217
(((((..((((...))))......)	chr6:31958179-31958384(+)$1	1	123	148	9.1281
((((...((((...)))))))))))	chr11:106689580-106689788(-)$1	1	168	193	11.5285
((((((((((....))))..)))))	chr15:74222553-74222761(+)$1	1	13	38	11.3890
...((.((((....)))).))))))	chr14:102706557-102706760(-)$1	1	54	79	9.8616
((((((((((....))))..)))))	chr15:74222561-74222772(+)$1	1	5	30	11.3890
(.((.((((......)))).)).))	chr14:32954185-32954427(+)$1	1	41	66	7.9521
((((...((((...)))))))))))	chr11:106689567-106689780(-)$1	1	160	185	11.5285
((.....(((....)))....))))	chr9:139565014-139565228(+)$1	1	70	95	10.6940
((((...(((.........)))..)	chrM:516-721(+)$1	1	103	128	8.3217
..(.(((.(((...)))..))).).	chr10:128256267-128256476(-)$1	1	128	153	8.6167
((.....(((....)))....))))	chr9:139565003-139565214(+)$1	1	81	106	10.6940
(((((.(((....)))))))))...	chr7:103029312-103029525(-)$1	1	125	150	8.3384

#PSSM
g : 0.38	f : 0.22	& : 0.11	e : 0.11	h : 0.05	: : 0.05	# : 0.05	
g : 0.38	f : 0.22	& : 0.11	[ : 0.11	h : 0.05	a : 0.05	# : 0.05	
g : 0.27	f : 0.22	a : 0.11	$ : 0.11	h : 0.05	c : 0.05	[ : 0.05	# : 0.05	b : 0.05	
g : 0.27	f : 0.22	[ : 0.11	c : 0.11	b : 0.11	$ : 0.11	h : 0.05	
c : 0.22	" : 0.22	g : 0.16	f : 0.11	$ : 0.11	! : 0.05	b : 0.05	[ : 0.05	
[ : 0.22	" : 0.22	c : 0.16	! : 0.11	g : 0.11	$ : 0.11	d : 0.05	
d : 0.38	c : 0.22	" : 0.22	$ : 0.11	! : 0.05	
d : 0.55	c : 0.33	[ : 0.11	
d : 0.55	c : 0.44	
d : 0.50	c : 0.33	m : 0.11	o : 0.05	
m : 0.55	d : 0.16	c : 0.11	r : 0.11	o : 0.05	
m : 0.55	l : 0.27	r : 0.11	o : 0.05	
m : 0.55	l : 0.27	r : 0.11	o : 0.05	
m : 0.44	l : 0.27	c : 0.11	r : 0.11	o : 0.05	
d : 0.50	c : 0.33	r : 0.11	o : 0.05	
d : 0.55	c : 0.33	r : 0.11	
d : 0.55	c : 0.22	f : 0.11	r : 0.11	
d : 0.55	2 : 0.11	f : 0.11	r : 0.11	4 : 0.11	
2 : 0.27	] : 0.16	f : 0.11	r : 0.11	g : 0.11	4 : 0.11	6 : 0.05	d : 0.05	
c : 0.33	2 : 0.16	f : 0.11	g : 0.11	4 : 0.11	6 : 0.05	b : 0.05	] : 0.05	
c : 0.33	g : 0.22	f : 0.11	b : 0.11	4 : 0.11	h : 0.05	6 : 0.05	
c : 0.33	g : 0.33	h : 0.11	f : 0.11	6 : 0.05	b : 0.05	
g : 0.33	] : 0.22	2 : 0.16	h : 0.11	3 : 0.11	6 : 0.05	
g : 0.33	a : 0.16	2 : 0.16	h : 0.11	3 : 0.11	6 : 0.05	e : 0.05	
g : 0.38	h : 0.11	9 : 0.11	3 : 0.11	e : 0.11	f : 0.11	J : 0.05	

#score	175.2767492592333
#seq	18
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_transcript_m3_run1.txt

#BEAR
[ccc[bbtttttttttttbb33	chr3:126713219-126713469(+)$1	250	3	25	22.4555
::eeeeettttttttttteeee	chr17:27003165-27003429(+)$1	264	127	149	20.4808
eecccwwwwwwwwwwwwwwccc	chr9:139733595-139733827(+)$1	232	161	183	20.1748
ee:ddddtttttttttttdddd	chr3:42676714-42676959(+)$1	245	82	104	21.5719
::::cccuuuuuuuuuuuuccc	chr19:17264702-17264946(+)$1	244	199	221	19.2124
[fffffftttttttttttffff	chr10:32311749-32312017(-)$1	268	81	103	21.3232
dddd[bbtttttttttttbb]d	chr8:37720398-37720631(-)$1	233	154	176	22.0654
d"""cccuuuuuuuuuuuuccc	chr2:99980739-99980978(+)$1	239	112	134	22.8597
eeeeevvvvvvvvvvvvveeee	chr15:93540191-93540421(+)$1	230	0	22	20.3894
ddd!!bbvvvvvvvvvvvvvbb	chr2:232325142-232325365(-)$1	223	124	146	20.9873
"""eeeeesssssssssseeee	chr13:31035388-31035658(-)$1	270	21	43	14.5599
"""ddddtttttttttttdddd	chr1:70716368-70716692(+)$1	324	139	161	22.9941
BBddddvvvvvvvvvvvvvddd	chr15:63351711-63351977(+)$1	266	148	170	20.0781
a!!a[bbtttttttttttbb]a	chr16:89350128-89350409(-)$1	281	108	130	22.6171
gggggggtttttttttttgggg	chr19:5711838-5712104(-)$1	266	154	176	22.2025
[eeeeevvvvvvvvvvvvveee	chr7:5781130-5781385(-)$1	255	218	240	21.4313
====[bbvvvvvvvvvvvvvbb	chr1:186321043-186321316(-)$1	273	237	259	21.3214
dd!!ccctttttttttttccc2	chr22:50023520-50023785(-)$1	265	199	221	22.9053
da[dddduuuuuuuuuuuuddd	chr19:37500403-37500660(+)$1	257	212	234	22.5384
=======ttttttttttt====	chr5:138700152-138700374(+)$1	222	20	42	22.6129
!dddd[awwwwwwwwwwwwwwa	chr11:638008-638296(+)$1	288	6	28	20.1020
h####bbtttttttttttbb22	chr6:31696958-31697209(-)$1	251	8	30	21.6608
c:eeeeeuuuuuuuuuuuueee	chr15:41641297-41641535(+)$1	238	45	67	21.1754
dddd[bbuuuuuuuuuuuubb]	chr15:63352973-63353240(+)$1	267	57	79	21.8238
hhhhhhhttttttttttthhhh	chr16:85677502-85677774(+)$1	272	218	240	20.5286
ff[cccuuuuuuuuuuuuccc]	chr7:127975690-127975947(-)$1	257	42	64	21.8584
hffffffwwwwwwwwwwwwwwf	chr14:105257691-105257950(-)$1	259	145	167	18.8800
:::ddddtttttttttttdddd	chr1:186330873-186331096(-)$1	223	91	113	20.1019
gggbb[attttttttttta]bb	chr16:355939-356252(-)$1	313	194	216	21.7794
ggggcccvvvvvvvvvvvvvcc	chr2:54858424-54858731(+)$1	307	18	40	21.9288
hhhhhhhttttttttttthhhh	chr7:1883704-1884013(-)$1	309	148	170	20.5286
"""ddddtttttttttttdddd	chr16:85669163-85669404(+)$1	241	77	99	22.9941
[ccc[bbuuuuuuuuuuuubbc	chr3:126717579-126717828(+)$1	249	108	130	22.2163
eeeeewwwwwwwwwwwwwweee	chr1:39750868-39751108(+)$1	240	63	85	19.7178
ddddccctttttttttttccc]	chr6:76372866-76373189(+)$1	323	29	51	22.7986
&&&&ccctttttttttttccc7	chr10:129906022-129906257(-)$1	235	129	151	20.1977
c!!ddddtttttttttttdddd	chr15:29088009-29088233(+)$1	224	176	198	23.0327
ggggcccuuuuuuuuuuuuccc	chr22:49979562-49979788(-)$1	226	106	128	22.7155
"""ddddtttttttttttdddd	chr17:36865339-36865627(+)$1	288	129	151	22.9941
cccdddduuuuuuuuuuuuddd	chr11:61897236-61897497(+)$1	261	199	221	22.4726
cceeeeettttttttttteeee	chr19:2121737-2121971(-)$1	234	181	203	22.1710
cccyyyyyyyyyyyyyyyyccc	chr16:89357113-89357335(-)$1	222	164	186	19.5846
]cccccctttttttttttccc:	chr22:20918795-20919036(+)$1	241	139	161	21.9444
ffffffyyyyyyyyyyyyyyyy	chr2:102472404-102472688(+)$1	284	108	130	18.7207
g!!ddddvvvvvvvvvvvvvdd	chr7:155504008-155504250(+)$1	242	163	185	22.1271

#otherMatches

#Seq PSSM
UGGCUGCCUGUUCCAUCCGCUC	chr3:126713219-126713469(+)$1	250	3	25	22.4555
GAGGGUGAAAUCCGAGUGCGCC	chr17:27003165-27003429(+)$1	264	127	149	20.4808
UUCGCACAGGUCCGGAGAAGCG	chr9:139733595-139733827(+)$1	232	161	183	20.1748
GAAAUGCAGAGAUUAAGAGCAU	chr3:42676714-42676959(+)$1	245	82	104	21.5719
AAACGCCACCUCUGUUCCCGGC	chr19:17264702-17264946(+)$1	244	199	221	19.2124
AAGAGUUCACUGUUGCAAGACU	chr10:32311749-32312017(-)$1	268	81	103	21.3232
UGGAAGAAACCCCCAAUAUCCU	chr8:37720398-37720631(-)$1	233	154	176	22.0654
CCGAAGCUACUCUUAAACUGCU	chr2:99980739-99980978(+)$1	239	112	134	22.8597
GGACCAGGGAAAAGGAGAGGUC	chr15:93540191-93540421(+)$1	230	0	22	20.3894
GGAAAUGGCCAAACAGAAAGCA	chr2:232325142-232325365(-)$1	223	124	146	20.9873
GAUGCAGCAAAAAAGGGAGUUG	chr13:31035388-31035658(-)$1	270	21	43	14.5599
CCAACUGUAUACCUGCAUCAGU	chr1:70716368-70716692(+)$1	324	139	161	22.9941
CCGACCGCAAAUAUGAAGAGGU	chr15:63351711-63351977(+)$1	266	148	170	20.0781
GGACAGCAAGGAGAGGAGGCGG	chr16:89350128-89350409(-)$1	281	108	130	22.6171
GCCCCGCAGGAAGUCAAAGCGG	chr19:5711838-5712104(-)$1	266	154	176	22.2025
AGUCAUAACCAAGCAGCAAAUG	chr7:5781130-5781385(-)$1	255	218	240	21.4313
AAAUGUAUAAAAGUUAAAUUUA	chr1:186321043-186321316(-)$1	273	237	259	21.3214
AUGAGCUCAUGAGAAAACAGUA	chr22:50023520-50023785(-)$1	265	199	221	22.9053
ccaugggaucuuucugugcccc	chr19:37500403-37500660(+)$1	257	212	234	22.5384
GGUUUAGUUCAAGAUAUUUUAA	chr5:138700152-138700374(+)$1	222	20	42	22.6129
ACUGCCCACCACACACACCUAG	chr11:638008-638296(+)$1	288	6	28	20.1020
GCUCCUCUUAAAGAAUCUGACC	chr6:31696958-31697209(-)$1	251	8	30	21.6608
GAUCAGCAACCAGGAAGAAGCU	chr15:41641297-41641535(+)$1	238	45	67	21.1754
AGACCCAUGGUGUGUGUGUUGU	chr15:63352973-63353240(+)$1	267	57	79	21.8238
cccaggaguuugagaccauccu	chr16:85677502-85677774(+)$1	272	218	240	20.5286
AAGAGGUAAGCAGCUCAUCCUG	chr7:127975690-127975947(-)$1	257	42	64	21.8584
GGGCCUCGAGAUGAAGACAAGG	chr14:105257691-105257950(-)$1	259	145	167	18.8800
UCAGGCCAAGGAACAACAGGCC	chr1:186330873-186331096(-)$1	223	91	113	20.1019
aaucugggugaagguggacggg	chr16:355939-356252(-)$1	313	194	216	21.7794
UCGGAGGACAUGCCAAACACCC	chr2:54858424-54858731(+)$1	307	18	40	21.9288
AGGGUCGUGGGAAAGUGUUGAC	chr7:1883704-1884013(-)$1	309	148	170	20.5286
GCAGUUGUCUUUUUUUCUCAGC	chr16:85669163-85669404(+)$1	241	77	99	22.9941
AGAGAUGGGAUUCCUAGGACAC	chr3:126717579-126717828(+)$1	249	108	130	22.2163
GAACCUUGCACAUGACUAUGGU	chr1:39750868-39751108(+)$1	240	63	85	19.7178
AUCAGACCAAAUGCCAAAGUUG	chr6:76372866-76373189(+)$1	323	29	51	22.7986
UUAACCGGCAGCAAGAGACGGC	chr10:129906022-129906257(-)$1	235	129	151	20.1977
aucugcuccuucugcuucagca	chr15:29088009-29088233(+)$1	224	176	198	23.0327
ACCCCUGGGACUCACAGCACGG	chr22:49979562-49979788(-)$1	226	106	128	22.7155
CCUCGGGAGCCUGCAUGACCUG	chr17:36865339-36865627(+)$1	288	129	151	22.9941
CUGAGUCUCCCACGAUGCUGAC	chr11:61897236-61897497(+)$1	261	199	221	22.4726
CCUGGACGACAAGGACGAGUCC	chr19:2121737-2121971(-)$1	234	181	203	22.1710
UCAAAAACCAAAGAUAAAGUGA	chr16:89357113-89357335(-)$1	222	164	186	19.5846
agcagcaUCUAAUUAAAUUGCA	chr22:20918795-20919036(+)$1	241	139	161	21.9444
gcgucuagaggaguuggagaga	chr2:102472404-102472688(+)$1	284	108	130	18.7207
GUAAAGCAUagauggccccagc	chr7:155504008-155504250(+)$1	242	163	185	22.1271

#DB
.(((.((...........))..	chr3:126713219-126713469(+)$1	1	3	25	22.4555
..(((((...........))))	chr17:27003165-27003429(+)$1	1	127	149	20.4808
(((((..............)))	chr9:139733595-139733827(+)$1	1	161	183	20.1748
)).((((...........))))	chr3:42676714-42676959(+)$1	1	82	104	21.5719
....(((............)))	chr19:17264702-17264946(+)$1	1	199	221	19.2124
.((((((...........))))	chr10:32311749-32312017(-)$1	1	81	103	21.3232
((((.((...........)).)	chr8:37720398-37720631(-)$1	1	154	176	22.0654
(...(((............)))	chr2:99980739-99980978(+)$1	1	112	134	22.8597
(((((.............))))	chr15:93540191-93540421(+)$1	1	0	22	20.3894
(((..((.............))	chr2:232325142-232325365(-)$1	1	124	146	20.9873
...(((((..........))))	chr13:31035388-31035658(-)$1	1	21	43	14.5599
...((((...........))))	chr1:70716368-70716692(+)$1	1	139	161	22.9941
))((((.............)))	chr15:63351711-63351977(+)$1	1	148	170	20.0781
(..(.((...........)).)	chr16:89350128-89350409(-)$1	1	108	130	22.6171
(((((((...........))))	chr19:5711838-5712104(-)$1	1	154	176	22.2025
.(((((.............)))	chr7:5781130-5781385(-)$1	1	218	240	21.4313
((((.((.............))	chr1:186321043-186321316(-)$1	1	237	259	21.3214
((..(((...........))).	chr22:50023520-50023785(-)$1	1	199	221	22.9053
((.((((............)))	chr19:37500403-37500660(+)$1	1	212	234	22.5384
(((((((...........))))	chr5:138700152-138700374(+)$1	1	20	42	22.6129
.((((.(..............)	chr11:638008-638296(+)$1	1	6	28	20.1020
(....((...........))..	chr6:31696958-31697209(-)$1	1	8	30	21.6608
).(((((............)))	chr15:41641297-41641535(+)$1	1	45	67	21.1754
((((.((............)).	chr15:63352973-63353240(+)$1	1	57	79	21.8238
(((((((...........))))	chr16:85677502-85677774(+)$1	1	218	240	20.5286
((.(((............))).	chr7:127975690-127975947(-)$1	1	42	64	21.8584
)((((((..............)	chr14:105257691-105257950(-)$1	1	145	167	18.8800
...((((...........))))	chr1:186330873-186331096(-)$1	1	91	113	20.1019
(((((.(...........).))	chr16:355939-356252(-)$1	1	194	216	21.7794
(((((((.............))	chr2:54858424-54858731(+)$1	1	18	40	21.9288
(((((((...........))))	chr7:1883704-1884013(-)$1	1	148	170	20.5286
...((((...........))))	chr16:85669163-85669404(+)$1	1	77	99	22.9941
.(((.((............)))	chr3:126717579-126717828(+)$1	1	108	130	22.2163
(((((..............)))	chr1:39750868-39751108(+)$1	1	63	85	19.7178
(((((((...........))).	chr6:76372866-76373189(+)$1	1	29	51	22.7986
....(((...........))).	chr10:129906022-129906257(-)$1	1	129	151	20.1977
(..((((...........))))	chr15:29088009-29088233(+)$1	1	176	198	23.0327
(((((((............)))	chr22:49979562-49979788(-)$1	1	106	128	22.7155
...((((...........))))	chr17:36865339-36865627(+)$1	1	129	151	22.9941
)))((((............)))	chr11:61897236-61897497(+)$1	1	199	221	22.4726
(((((((...........))))	chr19:2121737-2121971(-)$1	1	181	203	22.1710
(((................)))	chr16:89357113-89357335(-)$1	1	164	186	19.5846
.)))(((...........))).	chr22:20918795-20919036(+)$1	1	139	161	21.9444
((((((................	chr2:102472404-102472688(+)$1	1	108	130	18.7207
(..((((.............))	chr7:155504008-155504250(+)$1	1	163	185	22.1271

#PSSM
d : 0.15	g : 0.11	c : 0.11	[ : 0.08	e : 0.08	" : 0.08	h : 0.08	: : 0.06	= : 0.04	f : 0.04	B : 0.02	a : 0.02	! : 0.02	& : 0.02	] : 0.02	
c : 0.13	d : 0.13	e : 0.11	" : 0.11	: : 0.08	f : 0.08	g : 0.08	! : 0.06	= : 0.04	h : 0.04	B : 0.02	a : 0.02	# : 0.02	& : 0.02	
c : 0.13	e : 0.13	d : 0.13	" : 0.11	! : 0.08	g : 0.08	: : 0.06	f : 0.06	= : 0.04	[ : 0.04	h : 0.04	# : 0.02	& : 0.02	
d : 0.31	e : 0.15	c : 0.11	f : 0.06	g : 0.06	! : 0.04	= : 0.04	h : 0.04	: : 0.02	" : 0.02	a : 0.02	# : 0.02	b : 0.02	& : 0.02	y : 0.02	
d : 0.24	c : 0.22	e : 0.15	[ : 0.13	f : 0.06	h : 0.04	! : 0.02	g : 0.02	= : 0.02	# : 0.02	b : 0.02	y : 0.02	
d : 0.22	c : 0.20	b : 0.17	e : 0.11	f : 0.06	w : 0.04	[ : 0.04	h : 0.04	v : 0.02	g : 0.02	= : 0.02	y : 0.02	
d : 0.20	b : 0.17	c : 0.17	e : 0.08	v : 0.06	w : 0.04	f : 0.04	a : 0.04	h : 0.04	y : 0.04	g : 0.02	= : 0.02	u : 0.02	
t : 0.48	u : 0.20	v : 0.15	w : 0.08	y : 0.04	e : 0.02	
t : 0.48	u : 0.20	v : 0.15	w : 0.08	y : 0.04	s : 0.02	
t : 0.48	u : 0.20	v : 0.15	w : 0.08	y : 0.04	s : 0.02	
t : 0.48	u : 0.20	v : 0.15	w : 0.08	y : 0.04	s : 0.02	
t : 0.48	u : 0.20	v : 0.15	w : 0.08	y : 0.04	s : 0.02	
t : 0.48	u : 0.20	v : 0.15	w : 0.08	y : 0.04	s : 0.02	
t : 0.48	u : 0.20	v : 0.15	w : 0.08	y : 0.04	s : 0.02	
t : 0.48	u : 0.20	v : 0.15	w : 0.08	y : 0.04	s : 0.02	
t : 0.48	u : 0.20	v : 0.15	w : 0.08	y : 0.04	s : 0.02	
t : 0.48	u : 0.20	v : 0.15	w : 0.08	y : 0.04	s : 0.02	
t : 0.48	u : 0.20	v : 0.15	w : 0.08	y : 0.04	s : 0.02	
u : 0.17	d : 0.13	v : 0.13	c : 0.11	b : 0.08	e : 0.08	w : 0.08	h : 0.04	y : 0.04	f : 0.02	g : 0.02	= : 0.02	a : 0.02	
c : 0.22	d : 0.20	e : 0.15	b : 0.13	v : 0.08	w : 0.04	h : 0.04	f : 0.02	g : 0.02	= : 0.02	] : 0.02	y : 0.02	
c : 0.24	d : 0.22	e : 0.15	b : 0.11	] : 0.04	w : 0.04	h : 0.04	3 : 0.02	f : 0.02	g : 0.02	= : 0.02	2 : 0.02	y : 0.02	
d : 0.24	e : 0.15	c : 0.15	b : 0.06	] : 0.06	f : 0.04	a : 0.04	2 : 0.04	h : 0.04	3 : 0.02	g : 0.02	= : 0.02	7 : 0.02	: : 0.02	y : 0.02	

#score	958.8384814958904
#seq	45
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_CDS_m3_run2.txt

#BEAR
ddzzzzzzzzzzzzzzzzzdddd]eeeee22ddd	chr12:6687492-6687813(-)$1	321	185	219	11.9762
dddd[cccxxxxxxxxxxxxxxxccc]dddd22b	chr2:27258360-27258595(+)$1	235	4	38	13.1292
hhhhhxxxxxxxxxxxxxxxhhhhhhhh333eee	chr15:75646422-75646725(+)$1	303	143	177	13.2340
ddd!!ccctttttttttttccc22dddd333bb]	chr9:123287192-123287466(-)$1	274	183	217	15.6479
ccc[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:124143901-124144158(+)$1	257	1	35	10.8864
hh####cccssssssssssccc333hhhhhhhh3	chr17:37883379-37883656(+)$1	277	72	106	13.8193
[a!!cccbbssssssssssbb]ccc22a]fffff	chr14:24614890-24615199(-)$1	309	194	228	14.0188
####ddddqqqqqqqqddddiiiiiiiii]bb]b	chr17:80050791-80051062(-)$1	271	91	125	10.0917
gggggyyyyyyyyyyyyyyyyggggggg]ddddD	chr19:2227017-2227314(+)$1	297	170	204	14.8362
[ffffffddddoooooodddd4444ffffff]dd	chr17:4692816-4693076(+)$1	260	17	51	7.3673
======cccqqqqqqqqccc88888888======	chr3:195801989-195802294(-)$1	305	37	71	8.4720
:gggggggssssssssssggggggg::ffffff$	chr3:58520198-58520513(-)$1	315	19	53	10.4252
[gggggggtttttttttttggggggg]a4444dd	chr17:80397924-80398195(+)$1	271	157	191	16.3725
"""ffffffqqqqqqqqffffff333bb]ccc]c	chr16:28847426-28847662(+)$1	236	92	126	9.8982
[dddd[bbssssssssssbbdddd]eeeee:a[g	chr20:2640897-2641179(-)$1	282	22	56	12.0877
####eeeeeqqqqqqqqeeeeecccdddd22ddd	chr2:216177027-216177307(+)$1	280	165	199	10.8564
iiiiii[bbqqqqqqqqbb]iiiiiiiii333bb	chr13:113980077-113980362(-)$1	285	200	234	11.4912
iiiiiiiiuuuuuuuuuuuuiiiiiiiiibbddd	chr17:79211180-79211444(-)$1	264	177	211	15.6490
fff!!ddddrrrrrrrrrdddd22ffffff]ddd	chr16:89724493-89724758(+)$1	265	104	138	11.6425
ee[eeeeerrrrrrrrreeeee22eeeee333a]	chr22:32003726-32004024(+)$1	298	194	228	12.3440

#otherMatches

#Seq PSSM
AGAAAAAUAUUAAACAACGUUUCAUGUUUAACAU	chr12:6687492-6687813(-)$1	321	185	219	11.9762
CUUUGCCUCCACUCACCAUUCCCAGGGAGAGCAC	chr2:27258360-27258595(+)$1	235	4	38	13.1292
CUGAAUUAUCCCCAUCCCAUUUUAGGGGGAUCCU	chr15:75646422-75646725(+)$1	303	143	177	13.2340
CACAGACCCAGGAAUUUCAGGUAAGUGUACACUU	chr9:123287192-123287466(-)$1	274	183	217	15.6479
gacucugucaaaauauaaaaauaaaaauaaaaUA	chr12:124143901-124144158(+)$1	257	1	35	10.8864
ACCUCUGUUUUUCUCCUGUGACCCUGUCACCUUC	chr17:37883379-37883656(+)$1	277	72	106	13.8193
CCUCCCUUGCAAUGUAACCCACAGGCUGAGGAAU	chr14:24614890-24615199(-)$1	309	194	228	14.0188
CACCCCAGAGCUCCUCCUGGUGGGGUGGGGGCCG	chr17:80050791-80051062(-)$1	271	91	125	10.0917
GCAGGUUCCCUUCCGCACUCUCUUGCAGCAGGAG	chr19:2227017-2227314(+)$1	297	170	204	14.8362
CCCCGGAGAGGAAACAGCCUCCGUGUCUGGGCCC	chr17:4692816-4693076(+)$1	260	17	51	7.3673
UCAUCAUGCCUUUUUCCGCAACACAGUUUGGUGG	chr3:195801989-195802294(-)$1	305	37	71	8.4720
ACCUAGGGGAUAGAAGAGUCcuaggcagcagaag	chr3:58520198-58520513(-)$1	315	19	53	10.4252
GUGUGUGGAAACUCGCAGGCCACACGGGAAAUUA	chr17:80397924-80398195(+)$1	271	157	191	16.3725
GAAUUUGGCAUGGAAGAGCUGAGGGGCUGCAGGU	chr16:28847426-28847662(+)$1	236	92	126	9.8982
AUGCCACCAAGAAGGGGCGGGGCAAGGUCACUGC	chr20:2640897-2641179(-)$1	282	22	56	12.0877
UCAUGAGAAAAAAUGUCUUCUCUUUCAGCCUUAU	chr2:216177027-216177307(+)$1	280	165	199	10.8564
GACAGUGCUUCGGAUCUGGGACUGUUUGUUUAAC	chr13:113980077-113980362(-)$1	285	200	234	11.4912
CCUUUCAGCUCCCGAUUCUCCUGAAGGGGACGUC	chr17:79211180-79211444(-)$1	264	177	211	15.6490
GACCCACUGCCCUGCAUUCGGUAAGUCCCGGGUC	chr16:89724493-89724758(+)$1	265	104	138	11.6425
AGGUCCUGGUCCAGUGGCGGGAAGCUGUGUCAGU	chr22:32003726-32004024(+)$1	298	194	228	12.3440

#DB
((.................)))).)))))..)))	chr12:6687492-6687813(-)$1	1	185	219	11.9762
((((.(((...............))).))))..)	chr2:27258360-27258595(+)$1	1	4	38	13.1292
(((((...............))))))))...)))	chr15:75646422-75646725(+)$1	1	143	177	13.2340
(((..(((...........)))..))))...)).	chr9:123287192-123287466(-)$1	1	183	217	15.6479
(((.((((..........................	chr12:124143901-124144158(+)$1	1	1	35	10.8864
((....(((..........)))...)))))))).	chr17:37883379-37883656(+)$1	1	72	106	13.8193
.(..(((((..........)).)))..).)))))	chr14:24614890-24615199(-)$1	1	194	228	14.0188
....((((........))))))))))))).)).)	chr17:80050791-80051062(-)$1	1	91	125	10.0917
(((((................))))))).)))))	chr19:2227017-2227314(+)$1	1	170	204	14.8362
.((((((((((......))))....)))))).))	chr17:4692816-4693076(+)$1	1	17	51	7.3673
(((((((((........)))........))))))	chr3:195801989-195802294(-)$1	1	37	71	8.4720
.(((((((..........)))))))..((((((.	chr3:58520198-58520513(-)$1	1	19	53	10.4252
.(((((((...........))))))).)....))	chr17:80397924-80398195(+)$1	1	157	191	16.3725
...((((((........))))))...)).))).)	chr16:28847426-28847662(+)$1	1	92	126	9.8982
.((((.((..........)))))).))))).(.(	chr20:2640897-2641179(-)$1	1	22	56	12.0877
....(((((........))))))))))))..)))	chr2:216177027-216177307(+)$1	1	165	199	10.8564
((((((.((........)).)))))))))...))	chr13:113980077-113980362(-)$1	1	200	234	11.4912
((((((((............))))))))))))))	chr17:79211180-79211444(-)$1	1	177	211	15.6490
(((..((((.........))))..)))))).)))	chr16:89724493-89724758(+)$1	1	104	138	11.6425
((.(((((.........)))))..)))))...).	chr22:32003726-32004024(+)$1	1	194	228	12.3440

#PSSM
[ : 0.20	d : 0.15	h : 0.10	# : 0.10	i : 0.10	c : 0.05	g : 0.05	= : 0.05	: : 0.05	" : 0.05	f : 0.05	e : 0.05	
d : 0.20	g : 0.15	h : 0.10	# : 0.10	f : 0.10	i : 0.10	c : 0.05	a : 0.05	= : 0.05	" : 0.05	e : 0.05	
d : 0.15	# : 0.15	g : 0.15	f : 0.10	i : 0.10	z : 0.05	h : 0.05	c : 0.05	! : 0.05	= : 0.05	" : 0.05	[ : 0.05	
! : 0.15	# : 0.15	g : 0.15	d : 0.10	f : 0.10	i : 0.10	z : 0.05	h : 0.05	[ : 0.05	= : 0.05	e : 0.05	
d : 0.15	g : 0.15	! : 0.10	f : 0.10	e : 0.10	i : 0.10	z : 0.05	[ : 0.05	h : 0.05	# : 0.05	c : 0.05	= : 0.05	
c : 0.15	d : 0.15	f : 0.10	g : 0.10	e : 0.10	i : 0.10	z : 0.05	x : 0.05	# : 0.05	y : 0.05	= : 0.05	[ : 0.05	
c : 0.25	d : 0.15	f : 0.10	g : 0.10	e : 0.10	z : 0.05	x : 0.05	y : 0.05	b : 0.05	[ : 0.05	i : 0.05	
c : 0.20	d : 0.20	b : 0.15	g : 0.10	e : 0.10	z : 0.05	x : 0.05	y : 0.05	f : 0.05	i : 0.05	
x : 0.10	t : 0.10	c : 0.10	b : 0.10	d : 0.10	s : 0.10	z : 0.05	^ : 0.05	q : 0.05	y : 0.05	f : 0.05	e : 0.05	u : 0.05	r : 0.05	
q : 0.25	s : 0.20	x : 0.10	t : 0.10	r : 0.10	z : 0.05	^ : 0.05	y : 0.05	d : 0.05	u : 0.05	
q : 0.25	s : 0.20	x : 0.10	t : 0.10	r : 0.10	z : 0.05	^ : 0.05	y : 0.05	d : 0.05	u : 0.05	
q : 0.25	s : 0.20	x : 0.10	t : 0.10	r : 0.10	z : 0.05	^ : 0.05	y : 0.05	o : 0.05	u : 0.05	
q : 0.25	s : 0.20	x : 0.10	t : 0.10	r : 0.10	z : 0.05	^ : 0.05	y : 0.05	o : 0.05	u : 0.05	
q : 0.25	s : 0.20	x : 0.10	t : 0.10	r : 0.10	z : 0.05	^ : 0.05	y : 0.05	o : 0.05	u : 0.05	
q : 0.25	s : 0.20	x : 0.10	t : 0.10	r : 0.10	z : 0.05	^ : 0.05	y : 0.05	o : 0.05	u : 0.05	
q : 0.25	s : 0.20	x : 0.10	t : 0.10	r : 0.10	z : 0.05	^ : 0.05	y : 0.05	o : 0.05	u : 0.05	
s : 0.20	q : 0.20	x : 0.10	t : 0.10	r : 0.10	z : 0.05	^ : 0.05	d : 0.05	y : 0.05	o : 0.05	u : 0.05	
s : 0.20	x : 0.10	t : 0.10	d : 0.10	e : 0.10	z : 0.05	^ : 0.05	y : 0.05	c : 0.05	f : 0.05	b : 0.05	u : 0.05	r : 0.05	
d : 0.15	x : 0.10	t : 0.10	s : 0.10	b : 0.10	e : 0.10	z : 0.05	^ : 0.05	y : 0.05	c : 0.05	g : 0.05	f : 0.05	u : 0.05	
d : 0.20	c : 0.15	x : 0.10	b : 0.10	g : 0.10	e : 0.10	^ : 0.05	y : 0.05	f : 0.05	] : 0.05	u : 0.05	
d : 0.20	i : 0.15	c : 0.10	g : 0.10	e : 0.10	x : 0.05	h : 0.05	^ : 0.05	b : 0.05	y : 0.05	8 : 0.05	f : 0.05	
d : 0.15	i : 0.15	g : 0.15	c : 0.10	e : 0.10	x : 0.05	h : 0.05	^ : 0.05	] : 0.05	4 : 0.05	8 : 0.05	f : 0.05	
2 : 0.15	i : 0.15	g : 0.15	d : 0.10	c : 0.10	x : 0.05	h : 0.05	^ : 0.05	3 : 0.05	4 : 0.05	8 : 0.05	f : 0.05	
c : 0.15	2 : 0.15	i : 0.15	g : 0.15	3 : 0.10	] : 0.05	h : 0.05	^ : 0.05	4 : 0.05	8 : 0.05	d : 0.05	
c : 0.15	i : 0.15	g : 0.15	e : 0.10	3 : 0.10	h : 0.05	d : 0.05	^ : 0.05	4 : 0.05	8 : 0.05	] : 0.05	f : 0.05	
e : 0.15	i : 0.15	h : 0.10	d : 0.10	g : 0.10	f : 0.10	c : 0.05	^ : 0.05	2 : 0.05	8 : 0.05	: : 0.05	3 : 0.05	
e : 0.15	i : 0.15	] : 0.10	h : 0.10	d : 0.10	f : 0.10	^ : 0.05	2 : 0.05	g : 0.05	8 : 0.05	: : 0.05	b : 0.05	
e : 0.15	d : 0.15	i : 0.15	f : 0.15	h : 0.10	a : 0.10	^ : 0.05	g : 0.05	8 : 0.05	b : 0.05	
e : 0.15	] : 0.15	i : 0.15	f : 0.15	d : 0.10	3 : 0.10	^ : 0.05	h : 0.05	= : 0.05	4 : 0.05	
3 : 0.20	f : 0.20	2 : 0.10	d : 0.10	^ : 0.05	h : 0.05	] : 0.05	= : 0.05	4 : 0.05	c : 0.05	e : 0.05	b : 0.05	
3 : 0.20	f : 0.15	2 : 0.10	d : 0.10	b : 0.10	^ : 0.05	h : 0.05	= : 0.05	4 : 0.05	c : 0.05	: : 0.05	] : 0.05	
d : 0.25	b : 0.10	f : 0.10	3 : 0.10	2 : 0.05	e : 0.05	^ : 0.05	h : 0.05	] : 0.05	= : 0.05	4 : 0.05	c : 0.05	a : 0.05	
d : 0.35	b : 0.10	f : 0.10	] : 0.10	2 : 0.05	e : 0.05	^ : 0.05	h : 0.05	= : 0.05	[ : 0.05	a : 0.05	
d : 0.30	b : 0.15	] : 0.10	e : 0.05	^ : 0.05	3 : 0.05	f : 0.05	D : 0.05	= : 0.05	$ : 0.05	c : 0.05	g : 0.05	

#score	244.24664183606498
#seq	20
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF640DDA_TIA1_CDS_m3_run1.txt

#BEAR
[a[arrrrrrrrra]a]g	chr4:155533484-155533688(-)$1	204	175	193	9.3962
ggggrrrrrrrrrggggg	chr4:74301924-74302163(+)$1	239	183	201	10.2067
ffffrrrrrrrrrfffff	chr6:26217065-26217332(+)$1	267	7	25	11.3621
ffffffpppppppfffff	chr19:9940575-9940842(+)$1	267	223	241	11.4049
ffffffpppppppfffff	chr12:69746910-69747124(+)$1	214	121	139	11.4049
!!ddddpppppppdddd]	chr1:151237594-151237846(+)$1	252	191	209	8.5278
eeeeeqqqqqqqqeeeee	chr12:46756720-46756967(-)$1	247	228	246	7.0591
ffffffpppppppfffff	chr2:21229662-21229873(-)$1	211	150	168	11.4049
[eeeeepppppppeeeee	chr17:37009249-37009459(-)$1	210	167	185	9.7694
ddddrrrrrrrrrdddd:	chr19:18390715-18390967(-)$1	252	56	74	8.2015
ddddrrrrrrrrrdddd:	chr4:74320867-74321075(+)$1	208	81	99	8.2015
ffffffpppppppfffff	chr12:69746941-69747191(+)$1	250	90	108	11.4049
ffffffpppppppfffff	chr12:46755989-46756231(-)$1	242	44	62	11.4049
ddddrrrrrrrrrdddd]	chr2:21228412-21228641(-)$1	229	136	154	9.2261
fffffqqqqqqqqfffff	chr2:21229611-21229852(-)$1	241	112	130	8.5360
fffffqqqqqqqqfffff	chr12:46756176-46756386(-)$1	210	76	94	8.5360
ddddrrrrrrrrrddddf	chr2:242276811-242277094(+)$1	283	105	123	9.3568
ffffffpppppppfffff	chr12:46756042-46756264(-)$1	222	77	95	11.4049
fffffqqqqqqqqfffff	chr16:28847404-28847620(+)$1	216	118	136	8.5360
dddcccpppppppccc]d	chr4:155533443-155533684(-)$1	241	192	210	9.0811
fffffqqqqqqqqfffff	chr4:166418658-166418864(+)$1	206	27	45	8.5360
ffffffpppppppfffff	chr4:74321269-74321504(+)$1	235	61	79	11.4049
eeeerrrrrrrrreeeee	chr5:42800902-42801139(-)$1	237	29	47	10.1609
fffffqqqqqqqqfffff	chr17:37009849-37010080(-)$1	231	12	30	8.5360
hhhhrrrrrrrrrhhhhh	chr15:69745949-69746160(+)$1	211	25	43	7.7009
dddcccpppppppccc]d	chr17:42398619-42398889(-)$1	270	31	49	9.0811
eeeerrrrrrrrreeeee	chr2:178081392-178081637(+)$1	245	10	28	10.1609
fffffqqqqqqqqfffff	chr12:46756186-46756420(-)$1	234	110	128	8.5360
ffffffooooooffffff	chr3:128634294-128634571(+)$1	277	158	176	7.1595
ggggrrrrrrrrrggggg	chr20:2637086-2637338(+)$1	252	165	183	10.2067
eee[bbpppppppbb]ee	chr17:57917077-57917349(+)$1	272	236	254	8.6900
ffffffooooooffffff	chr17:76200902-76201159(+)$1	257	72	90	7.1595
ddddrrrrrrrrrdddd:	chr12:46757419-46757648(-)$1	229	188	206	8.2015
ffffffpppppppfffff	chr4:74321237-74321469(+)$1	232	93	111	11.4049
geeeeepppppppeeeee	chr6:168319487-168319755(+)$1	268	109	127	9.7814
ffffffooooooffffff	chr7:139824259-139824537(-)$1	278	6	24	7.1595
ddddrrrrrrrrrdddd:	chr4:74320875-74321097(+)$1	222	73	91	8.2015
iiiiiipppppppiiiii	chr2:223773511-223773765(+)$1	254	218	236	9.0735
feeeeepppppppeeeee	chr4:155533583-155533805(-)$1	222	32	50	9.9147
ffffffpppppppfffff	chr3:120363158-120363400(-)$1	242	49	67	11.4049
ccc[bbpppppppbb]cc	chr3:52723113-52723414(+)$1	301	263	281	8.3418
fffffqqqqqqqqfffff	chr2:21233402-21233622(-)$1	220	152	170	8.5360
ffffffooooooffffff	chr3:149089428-149089676(-)$1	248	116	134	7.1595
feeeeepppppppeeeee	chr16:67174374-67174620(+)$1	246	141	159	9.9147
ffffffooooooffffff	chr16:84214610-84214864(-)$1	254	160	178	7.1595
ffffffooooooffffff	chr4:83765405-83765654(-)$1	249	177	195	7.1595
"""cccpppppppccc33	chr1:33252374-33252644(-)$1	270	34	52	8.7033
gggggqqqqqqqqggggg	chr12:46757660-46757886(-)$1	226	153	171	7.0419
eeeeeqqqqqqqqeeeee	chr4:74275015-74275235(+)$1	220	174	192	7.0591
dddarrrrrrrrra]ddd	chr1:110170999-110171261(+)$1	262	225	243	9.0336
ggggrrrrrrrrrggggg	chr14:23239357-23239621(+)$1	264	157	175	10.2067
eeeerrrrrrrrreeeee	chr6:31625418-31625691(+)$1	273	95	113	10.1609
ddddrrrrrrrrrdddd:	chr2:21231637-21231889(-)$1	252	151	169	8.2015

#otherMatches

#Seq PSSM
GUGUGAACUGGAGAGGGG	chr4:155533484-155533688(-)$1	204	175	193	9.3962
uuuuuuaaauuauaaaau	chr4:74301924-74302163(+)$1	239	183	201	10.2067
AUUUUAACCAAUCAAAUU	chr6:26217065-26217332(+)$1	267	7	25	11.3621
GUUGUCUCUGUAUGACAG	chr19:9940575-9940842(+)$1	267	223	241	11.4049
CUCUCUCACAUUAAGGGA	chr12:69746910-69747124(+)$1	214	121	139	11.4049
GGUACUGUGGCAGAGUAG	chr1:151237594-151237846(+)$1	252	191	209	8.5278
UUUUCAUCUUCUGGAAGA	chr12:46756720-46756967(-)$1	247	228	246	7.0591
UGAUUUCUCCUUUAAAUC	chr2:21229662-21229873(-)$1	211	150	168	11.4049
AUUGUGCUGACAACACAG	chr17:37009249-37009459(-)$1	210	167	185	9.7694
GCAGCCUCAAACCCUGCc	chr19:18390715-18390967(-)$1	252	56	74	8.2015
UCAGGGACAAAAACUGAU	chr4:74320867-74321075(+)$1	208	81	99	8.2015
CUCUCUCACAUUAAGGGA	chr12:69746941-69747191(+)$1	250	90	108	11.4049
GAAACAUAAAUGUUGUUU	chr12:46755989-46756231(-)$1	242	44	62	11.4049
CAUGCCUACGUUCCAUGU	chr2:21228412-21228641(-)$1	229	136	154	9.2261
AUGGGCAAUAUUACCUAU	chr2:21229611-21229852(-)$1	241	112	130	8.5360
GUCCCAACUAUUAGGGAU	chr12:46756176-46756386(-)$1	210	76	94	8.5360
ACCUUUUGGACAUGGGUA	chr2:242276811-242277094(+)$1	283	105	123	9.3568
GAAACAUAAAUGUUGUUU	chr12:46756042-46756264(-)$1	222	77	95	11.4049
UUGGCAUGGAAGAGCUGA	chr16:28847404-28847620(+)$1	216	118	136	8.5360
AGGAAUAGAAAUAAUUCC	chr4:155533443-155533684(-)$1	241	192	210	9.0811
UUUCUGAAAGGAAAGAAG	chr4:166418658-166418864(+)$1	206	27	45	8.5360
UUUUGCUCAUAUUGCAGG	chr4:74321269-74321504(+)$1	235	61	79	11.4049
CUGUAAAUUGCCCACAGA	chr5:42800902-42801139(-)$1	237	29	47	10.1609
GCCGGUUUUUGCUCCGGC	chr17:37009849-37010080(-)$1	231	12	30	8.5360
AUUUGUUGUAGGAGGAUA	chr15:69745949-69746160(+)$1	211	25	43	7.7009
GUCGAGCCCUGACCUCUG	chr17:42398619-42398889(-)$1	270	31	49	9.0811
GGUCGUGGAGGUGGAUCU	chr2:178081392-178081637(+)$1	245	10	28	10.1609
GUCCCAACUAUUAGGGAU	chr12:46756186-46756420(-)$1	234	110	128	8.5360
CUUGGAUUUAUUUCCAAG	chr3:128634294-128634571(+)$1	277	158	176	7.1595
GGCUUGCAACCAUAGCUU	chr20:2637086-2637338(+)$1	252	165	183	10.2067
UCUGCCUUAAAUUGGGAG	chr17:57917077-57917349(+)$1	272	236	254	8.6900
GCAACAAGUGGGUGUUGC	chr17:76200902-76201159(+)$1	257	72	90	7.1595
GCUUAUUGAAAUGAAGCU	chr12:46757419-46757648(-)$1	229	188	206	8.2015
UUUUGCUCAUAUUGCAGG	chr4:74321237-74321469(+)$1	232	93	111	11.4049
CCCUCUGUGCCAGAGAGG	chr6:168319487-168319755(+)$1	268	109	127	9.7814
AUGAAUCUUGGAGUUCAU	chr7:139824259-139824537(-)$1	278	6	24	7.1595
UCAGGGACAAAAACUGAU	chr4:74320875-74321097(+)$1	222	73	91	8.2015
AUUAUACCCUGGAUGUGA	chr2:223773511-223773765(+)$1	254	218	236	9.0735
CACUCAGACAUCAUGAGU	chr4:155533583-155533805(-)$1	222	32	50	9.9147
CAUGGGCAUCUUUCCUAU	chr3:120363158-120363400(-)$1	242	49	67	11.4049
CAGGUGACUUUUACAACU	chr3:52723113-52723414(+)$1	301	263	281	8.3418
UGUACUGGAAAACGUACA	chr2:21233402-21233622(-)$1	220	152	170	8.5360
GGUGGAAUUGAAUUCAUC	chr3:149089428-149089676(-)$1	248	116	134	7.1595
GAGAAGCCCUUCAUUUCU	chr16:67174374-67174620(+)$1	246	141	159	9.9147
UGGGGCACUCCAGCCCCA	chr16:84214610-84214864(-)$1	254	160	178	7.1595
ACUUUGAAGCCCCAAAGU	chr4:83765405-83765654(-)$1	249	177	195	7.1595
GAGCCAGGAAAUGUGGAG	chr1:33252374-33252644(-)$1	270	34	52	8.7033
UCUUCCCAUCUAUGAAGA	chr12:46757660-46757886(-)$1	226	153	171	7.0419
UGCCUGUUGCCAAAGGUA	chr4:74275015-74275235(+)$1	220	174	192	7.0591
CAGCUCACCUCAUGUCUG	chr1:110170999-110171261(+)$1	262	225	243	9.0336
UCAUCCAGUACCCAUGAA	chr14:23239357-23239621(+)$1	264	157	175	10.2067
AUCUCAUAAAACAGGAUU	chr6:31625418-31625691(+)$1	273	95	113	10.1609
AUGAAAGUAAAGAUCAUC	chr2:21231637-21231889(-)$1	252	151	169	8.2015

#DB
.(.(.........).).)	chr4:155533484-155533688(-)$1	1	175	193	9.3962
((((.........)))))	chr4:74301924-74302163(+)$1	1	183	201	10.2067
((((.........)))))	chr6:26217065-26217332(+)$1	1	7	25	11.3621
((((((.......)))))	chr19:9940575-9940842(+)$1	1	223	241	11.4049
((((((.......)))))	chr12:69746910-69747124(+)$1	1	121	139	11.4049
..((((.......)))).	chr1:151237594-151237846(+)$1	1	191	209	8.5278
(((((........)))))	chr12:46756720-46756967(-)$1	1	228	246	7.0591
((((((.......)))))	chr2:21229662-21229873(-)$1	1	150	168	11.4049
.(((((.......)))))	chr17:37009249-37009459(-)$1	1	167	185	9.7694
((((.........)))).	chr19:18390715-18390967(-)$1	1	56	74	8.2015
((((.........)))).	chr4:74320867-74321075(+)$1	1	81	99	8.2015
((((((.......)))))	chr12:69746941-69747191(+)$1	1	90	108	11.4049
((((((.......)))))	chr12:46755989-46756231(-)$1	1	44	62	11.4049
((((.........)))).	chr2:21228412-21228641(-)$1	1	136	154	9.2261
(((((........)))))	chr2:21229611-21229852(-)$1	1	112	130	8.5360
(((((........)))))	chr12:46756176-46756386(-)$1	1	76	94	8.5360
((((.........)))))	chr2:242276811-242277094(+)$1	1	105	123	9.3568
((((((.......)))))	chr12:46756042-46756264(-)$1	1	77	95	11.4049
(((((........)))))	chr16:28847404-28847620(+)$1	1	118	136	8.5360
((((((.......))).)	chr4:155533443-155533684(-)$1	1	192	210	9.0811
(((((........)))))	chr4:166418658-166418864(+)$1	1	27	45	8.5360
((((((.......)))))	chr4:74321269-74321504(+)$1	1	61	79	11.4049
((((.........)))))	chr5:42800902-42801139(-)$1	1	29	47	10.1609
(((((........)))))	chr17:37009849-37010080(-)$1	1	12	30	8.5360
((((.........)))))	chr15:69745949-69746160(+)$1	1	25	43	7.7009
((((((.......))).)	chr17:42398619-42398889(-)$1	1	31	49	9.0811
((((.........)))))	chr2:178081392-178081637(+)$1	1	10	28	10.1609
(((((........)))))	chr12:46756186-46756420(-)$1	1	110	128	8.5360
((((((......))))))	chr3:128634294-128634571(+)$1	1	158	176	7.1595
((((.........)))))	chr20:2637086-2637338(+)$1	1	165	183	10.2067
(((.((.......)).))	chr17:57917077-57917349(+)$1	1	236	254	8.6900
((((((......))))))	chr17:76200902-76201159(+)$1	1	72	90	7.1595
((((.........)))).	chr12:46757419-46757648(-)$1	1	188	206	8.2015
((((((.......)))))	chr4:74321237-74321469(+)$1	1	93	111	11.4049
((((((.......)))))	chr6:168319487-168319755(+)$1	1	109	127	9.7814
((((((......))))))	chr7:139824259-139824537(-)$1	1	6	24	7.1595
((((.........)))).	chr4:74320875-74321097(+)$1	1	73	91	8.2015
((((((.......)))))	chr2:223773511-223773765(+)$1	1	218	236	9.0735
)(((((.......)))))	chr4:155533583-155533805(-)$1	1	32	50	9.9147
((((((.......)))))	chr3:120363158-120363400(-)$1	1	49	67	11.4049
(((.((.......)).))	chr3:52723113-52723414(+)$1	1	263	281	8.3418
(((((........)))))	chr2:21233402-21233622(-)$1	1	152	170	8.5360
((((((......))))))	chr3:149089428-149089676(-)$1	1	116	134	7.1595
((((((.......)))))	chr16:67174374-67174620(+)$1	1	141	159	9.9147
((((((......))))))	chr16:84214610-84214864(-)$1	1	160	178	7.1595
((((((......))))))	chr4:83765405-83765654(-)$1	1	177	195	7.1595
...(((.......)))..	chr1:33252374-33252644(-)$1	1	34	52	8.7033
(((((........)))))	chr12:46757660-46757886(-)$1	1	153	171	7.0419
(((((........)))))	chr4:74275015-74275235(+)$1	1	174	192	7.0591
((((.........).)))	chr1:110170999-110171261(+)$1	1	225	243	9.0336
((((.........)))))	chr14:23239357-23239621(+)$1	1	157	175	10.2067
((((.........)))))	chr6:31625418-31625691(+)$1	1	95	113	10.1609
((((.........)))).	chr2:21231637-21231889(-)$1	1	151	169	8.2015

#PSSM
f : 0.47	d : 0.18	e : 0.11	g : 0.09	[ : 0.03	! : 0.01	h : 0.01	i : 0.01	c : 0.01	" : 0.01	
f : 0.43	e : 0.18	d : 0.18	g : 0.07	a : 0.01	! : 0.01	h : 0.01	i : 0.01	c : 0.01	" : 0.01	
f : 0.43	d : 0.20	e : 0.18	g : 0.07	[ : 0.01	h : 0.01	i : 0.01	c : 0.01	" : 0.01	
f : 0.43	e : 0.16	d : 0.15	g : 0.07	c : 0.05	a : 0.03	[ : 0.03	h : 0.01	i : 0.01	
f : 0.41	r : 0.32	e : 0.11	c : 0.05	b : 0.03	d : 0.01	i : 0.01	g : 0.01	
r : 0.32	f : 0.28	q : 0.18	e : 0.07	c : 0.05	b : 0.03	d : 0.01	i : 0.01	
p : 0.37	r : 0.32	q : 0.18	o : 0.11	
p : 0.37	r : 0.32	q : 0.18	o : 0.11	
p : 0.37	r : 0.32	q : 0.18	o : 0.11	
p : 0.37	r : 0.32	q : 0.18	o : 0.11	
p : 0.37	r : 0.32	q : 0.18	o : 0.11	
p : 0.37	r : 0.32	q : 0.18	o : 0.11	
p : 0.37	r : 0.32	q : 0.18	f : 0.11	
f : 0.43	e : 0.16	d : 0.15	g : 0.07	c : 0.05	a : 0.03	b : 0.03	h : 0.01	i : 0.01	
f : 0.43	e : 0.16	d : 0.15	g : 0.07	c : 0.05	] : 0.03	b : 0.03	h : 0.01	i : 0.01	
f : 0.43	d : 0.16	e : 0.16	g : 0.07	c : 0.05	] : 0.03	a : 0.01	h : 0.01	i : 0.01	
f : 0.43	e : 0.18	d : 0.16	g : 0.07	] : 0.05	h : 0.01	i : 0.01	c : 0.01	3 : 0.01	
f : 0.45	e : 0.18	g : 0.09	: : 0.09	d : 0.05	] : 0.03	h : 0.01	i : 0.01	c : 0.01	3 : 0.01	

#score	485.58087435130733
#seq	53
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF710LWM_SF3A3_transcript_m2_run2.txt

#BEAR
ddddcccqqqqqqqqcccI	chr1:8074314-8074581(-)$1	267	18	37	13.0263
gggggggqqqqqqqqgggg	chr14:24035594-24035843(-)$1	249	15	34	14.1968
ggeeeeeqqqqqqqqeeee	chr17:41464599-41464863(-)$1	264	123	142	14.3087
!!cccbbqqqqqqqqbb]c	chr16:89627122-89627340(+)$1	218	21	40	13.8107
ffa[cccqqqqqqqqccc]	chr22:50875262-50875511(+)$1	249	22	41	14.9106
iii!!bbqqqqqqqqbb]i	chr11:62621215-62621430(-)$1	215	76	95	13.8810
[ffffffqqqqqqqqffff	chr2:27427802-27428030(-)$1	228	70	89	13.2055
f:eeeeeqqqqqqqqeeee	chr19:39195406-39195669(+)$1	263	168	187	13.2222
"""ddddqqqqqqqqdddd	chr11:2156661-2156924(-)$1	263	108	127	14.7864
bbeeeeeqqqqqqqqeeee	chr20:398018-398277(+)$1	259	132	151	13.8150
eeeeebbqqqqqqqqbb]e	chr17:80010989-80011241(+)$1	252	78	97	13.7198
""a[cccqqqqqqqqccc]	chr10:135107163-135107420(-)$1	257	36	55	15.1777
$$$$cccqqqqqqqqccc4	chr21:46910015-46910276(+)$1	261	29	48	14.1174
]ccccccqqqqqqqqccce	chr16:89263717-89263979(-)$1	262	166	185	14.4654
]bbddddqqqqqqqqdddd	chr20:43052471-43052748(+)$1	277	137	156	13.7197
eeee[bbqqqqqqqqbb]e	chr9:139723676-139723952(+)$1	276	197	216	13.6936
gggg[bbqqqqqqqqbb]g	chr20:57478413-57478665(+)$1	252	68	87	13.7378
ddd[cccqqqqqqqqcccd	chr3:47456571-47456830(-)$1	259	30	49	14.6191
eea[cccqqqqqqqqccc]	chr22:46684149-46684419(+)$1	270	210	229	14.9737
eeeddddqqqqqqqqdddd	chr1:110171545-110171819(+)$1	274	224	243	14.4694
iiiiiiiqqqqqqqqiiii	chr1:19216506-19216766(-)$1	260	16	35	14.1253
b!!ddddqqqqqqqqdddd	chr19:6702495-6702738(-)$1	243	65	84	14.6606
cc!!cccqqqqqqqqccc2	chr3:148925255-148925556(-)$1	301	150	169	15.0173
bb[ddddqqqqqqqqdddd	chr5:149907203-149907466(+)$1	263	54	73	14.3106
!!ccc[aqqqqqqqqa]cc	chr2:27448843-27449096(+)$1	253	29	48	14.2457
e[eeeeeqqqqqqqqeeee	chr17:41613747-41613996(-)$1	249	189	208	14.3112
bb[ddddqqqqqqqqdddd	chr9:117012690-117012999(+)$1	309	39	58	14.3106
!!eeeeeqqqqqqqqeeee	chr20:21195006-21195250(+)$1	244	57	76	14.4762
###ddddqqqqqqqqdddd	chr1:17945684-17945925(+)$1	241	187	206	14.6728
dddd!!aqqqqqqqqa22d	chr16:67983768-67984006(-)$1	238	130	149	13.2712
ff!!cccqqqqqqqqccc3	chr7:1529220-1529498(-)$1	278	249	268	15.0245
cceeeeeqqqqqqqqeeee	chr2:101587281-101587542(+)$1	261	153	172	14.2408
cc!!cccqqqqqqqqccc2	chr3:33071662-33071899(-)$1	237	194	213	15.0173
ee!!cccqqqqqqqqccce	chr20:47711111-47711346(+)$1	235	73	92	15.1564
fff[cccqqqqqqqqcccf	chr2:74592264-74592507(-)$1	243	167	186	14.6111
cc[ddddqqqqqqqqdddd	chr17:74308988-74309249(-)$1	261	216	235	14.7364
ffffcccqqqqqqqqccc2	chr21:46899667-46899910(+)$1	243	21	40	14.2750
gg"""bbqqqqqqqqbbgg	chr13:111932724-111932998(+)$1	274	168	187	13.7772
!!eeeeeqqqqqqqqeeee	chr5:177827310-177827539(-)$1	229	127	146	14.4762
[ffffffqqqqqqqqffff	chr9:130706851-130707120(-)$1	269	155	174	13.2055
dddddddqqqqqqqqdddd	chr19:19105155-19105413(-)$1	258	227	246	14.1724
dd[ddddqqqqqqqqdddd	chr3:48451875-48452113(-)$1	238	73	92	14.5037
eeeeebbqqqqqqqqbb]e	chr12:122234057-122234325(-)$1	268	120	139	13.7198
gg[ddddqqqqqqqqdddd	chr7:100286249-100286507(-)$1	258	107	126	14.8043
eeee[bbqqqqqqqqbbee	chr1:113241198-113241455(+)$1	257	214	233	13.7014
ccc[cccqqqqqqqqccc]	chr20:36030691-36030933(+)$1	242	55	74	14.9932
cc[ddddqqqqqqqqdddd	chr17:40271069-40271355(-)$1	286	11	30	14.7364
ee!!cccqqqqqqqqccc]	chr3:133484967-133485203(+)$1	236	205	224	15.1633
dddda[aqqqqqqqqa]a]	chr7:36247513-36247722(+)$1	209	161	180	13.6093
d[a[cccqqqqqqqqccc]	chr11:64899711-64899984(-)$1	273	93	112	15.0593
gggggggqqqqqqqqgggg	chr1:985456-985715(+)$1	259	199	218	14.1968
fff[cccqqqqqqqqcccf	chr16:782274-782541(-)$1	267	140	159	14.6111
gggg!!aqqqqqqqqa22g	chr12:132475807-132476059(+)$1	252	166	185	13.6730
!a[ddddqqqqqqqqdddd	chr17:42398829-42399065(-)$1	236	14	33	14.8185
ggg[cccqqqqqqqqcccg	chr19:42790769-42791027(+)$1	258	93	112	15.0532
dffffffqqqqqqqqffff	chr18:690527-690879(-)$1	352	100	119	13.0502
cceeeeeqqqqqqqqeeee	chr14:23395407-23395655(-)$1	248	52	71	14.2408
gggggggqqqqqqqqgggg	chrX:153579296-153579572(-)$1	276	80	99	14.1968
bbeeeeeqqqqqqqqeeee	chr2:219296414-219296690(+)$1	276	154	173	13.8150
"""ddddqqqqqqqqdddd	chrY:2722464-2722749(+)$1	285	9	28	14.7864
eeeeebbqqqqqqqqbb]e	chr20:47905427-47905688(+)$1	261	88	107	13.7198
gggggggqqqqqqqqgggg	chr22:50354821-50355077(+)$1	256	57	76	14.1968
ee:ddddqqqqqqqqdddd	chr17:43213707-43213966(+)$1	259	184	203	13.4826
c[eeeeeqqqqqqqqeeee	chr16:2144107-2144361(-)$1	254	72	91	14.3423
!!a[cccqqqqqqqqccc]	chr14:95999857-96000063(-)$1	206	49	68	15.2927
ee!!cccqqqqqqqqccc2	chr20:62669815-62670105(+)$1	290	80	99	14.9337
$$$$cccqqqqqqqqccc]	chr3:50338116-50338387(-)$1	271	206	225	14.2485
""eeeeeqqqqqqqqeeee	chr20:61909309-61909577(+)$1	268	238	257	14.3611
bb[ddddqqqqqqqqdddd	chr2:216248115-216248355(-)$1	240	130	149	14.3106
cccddddqqqqqqqqdddd	chr2:11728725-11728992(+)$1	267	217	236	14.4941

#otherMatches

#Seq PSSM
CACUCAGGAAGAAAGCUGU	chr1:8074314-8074581(-)$1	267	18	37	13.0263
UGCUUCUAUUGGAUGAGAG	chr14:24035594-24035843(-)$1	249	15	34	14.1968
uuaucaguuuaauaucuga	chr17:41464599-41464863(-)$1	264	123	142	14.3087
UUUGGGCAUCAUCCAGCGC	chr16:89627122-89627340(+)$1	218	21	40	13.8107
AGAGAUCUGAUGAGUGAUG	chr22:50875262-50875511(+)$1	249	22	41	14.9106
GGUAACCAUGUCUGAGGAA	chr11:62621215-62621430(-)$1	215	76	95	13.8810
CUGUGCUGUCUCUCGAGUG	chr2:27427802-27428030(-)$1	228	70	89	13.2055
GAUUGUGGACGGCAACGCA	chr19:39195406-39195669(+)$1	263	168	187	13.2222
UCUGGCCUGGGGCUUGGCC	chr11:2156661-2156924(-)$1	263	108	127	14.7864
CCCCUGCUGUUCUCUGCAG	chr20:398018-398277(+)$1	259	132	151	13.8150
GACCUCAGAGAACAGUGCG	chr17:80010989-80011241(+)$1	252	78	97	13.7198
UACCCAUAAACAAAGAUGA	chr10:135107163-135107420(-)$1	257	36	55	15.1777
cacAGCCCCUGCUCAGGCC	chr21:46910015-46910276(+)$1	261	29	48	14.1174
GCCAGGCUGGACUGUGCUG	chr16:89263717-89263979(-)$1	262	166	185	14.4654
CUCCAGCUGGACCCUGCUG	chr20:43052471-43052748(+)$1	277	137	156	13.7197
GUUCCUGGACGUGUACAAG	chr9:139723676-139723952(+)$1	276	197	216	13.6936
AAGAACAGAAUACUAUGCU	chr20:57478413-57478665(+)$1	252	68	87	13.7378
AUGUGCUUUCCUCUUGGCC	chr3:47456571-47456830(-)$1	259	30	49	14.6191
GGCCCGGAAGCACAGCCGA	chr22:46684149-46684419(+)$1	270	210	229	14.9737
GGAGAUGCUGGAGAACAUC	chr1:110171545-110171819(+)$1	274	224	243	14.4694
GGUGGGGUUUUGACCCCCC	chr1:19216506-19216766(-)$1	260	16	35	14.1253
gccucccuaagugcuggga	chr19:6702495-6702738(-)$1	243	65	84	14.6606
AGCUGUGAAUGGAUACACU	chr3:148925255-148925556(-)$1	301	150	169	15.0173
GUUGGUGAAUAUUGAUACC	chr5:149907203-149907466(+)$1	263	54	73	14.3106
UUGAGAGUUGUAUGUCCCU	chr2:27448843-27449096(+)$1	253	29	48	14.2457
CCAUUCAGAAAACCGUGAG	chr17:41613747-41613996(-)$1	249	189	208	14.3112
CGGUGCCCAGAGAGAGGCA	chr9:117012690-117012999(+)$1	309	39	58	14.3106
CCUAAGUAAAGCUUAACUU	chr20:21195006-21195250(+)$1	244	57	76	14.4762
AGCGUUUCGGACAUCAAGC	chr1:17945684-17945925(+)$1	241	187	206	14.6728
GCCCAAGGUGUGGAAUGGG	chr16:67983768-67984006(-)$1	238	130	149	13.2712
CGCAUUCAACCCAGAGAAC	chr7:1529220-1529498(-)$1	278	249	268	15.0245
CUUAAUUUCCUGUACAGUU	chr2:101587281-101587542(+)$1	261	153	172	14.2408
CAAUUCUCCCUUCUUAGAU	chr3:33071662-33071899(-)$1	237	194	213	15.0173
AUUUUGUGUCUCUGAGCAA	chr20:47711111-47711346(+)$1	235	73	92	15.1564
CAGGCUGACAUCGACCAGC	chr2:74592264-74592507(-)$1	243	167	186	14.6111
CCUAUAAGAUCUAUGUUAU	chr17:74308988-74309249(-)$1	261	216	235	14.7364
GCCCCAGAGACUCCCCUGA	chr21:46899667-46899910(+)$1	243	21	40	14.2750
AUUGAGCGGAUAUUAGUGU	chr13:111932724-111932998(+)$1	274	168	187	13.7772
aaugcauuuuauuccaugu	chr5:177827310-177827539(-)$1	229	127	146	14.4762
AGACAGCAACCUCCGGCUG	chr9:130706851-130707120(-)$1	269	155	174	13.2055
GCCAACAAAUAGGUAUGUU	chr19:19105155-19105413(-)$1	258	227	246	14.1724
GGAGGAGGAGAUGGGCUCC	chr3:48451875-48452113(-)$1	238	73	92	14.5037
AGCUGUUGUGUCAGGAACC	chr12:122234057-122234325(-)$1	268	120	139	13.7198
CAGGGCUGCCGGCAGAGCC	chr7:100286249-100286507(-)$1	258	107	126	14.8043
UGACAUGCUGUUCCACAGU	chr1:113241198-113241455(+)$1	257	214	233	13.7014
GGGGUGGUUGGCUCUCCAG	chr20:36030691-36030933(+)$1	242	55	74	14.9932
GGCAGCUGCUGGAAAAGUU	chr17:40271069-40271355(-)$1	286	11	30	14.7364
ACAAUCUGAAAGGCAAGAA	chr3:133484967-133485203(+)$1	236	205	224	15.1633
GUUCCUCCUUUUGAAGUGU	chr7:36247513-36247722(+)$1	209	161	180	13.6093
CUAGAGCAUUAAACAGCUG	chr11:64899711-64899984(-)$1	273	93	112	15.0593
CGGCUUCUCCCACCUGGAG	chr1:985456-985715(+)$1	259	199	218	14.1968
GAGUGUCUGCGCUGUGGCU	chr16:782274-782541(-)$1	267	140	159	14.6111
AUUUGACGCAUUACAGGAA	chr12:132475807-132476059(+)$1	252	166	185	13.6730
UGCACCACUCUCCUCUGGU	chr17:42398829-42399065(-)$1	236	14	33	14.8185
UUGAGUUGGGGUUGGGGCC	chr19:42790769-42791027(+)$1	258	93	112	15.0532
UCCUAGUAAUUUGUGGCUG	chr18:690527-690879(-)$1	352	100	119	13.0502
UGGCUUUCUCUUAAAGAAG	chr14:23395407-23395655(-)$1	248	52	71	14.2408
GGGCCUCUUGCUCCUGGGG	chrX:153579296-153579572(-)$1	276	80	99	14.1968
CCCCACUCUAGCCAAAGUG	chr2:219296414-219296690(+)$1	276	154	173	13.8150
AUGGGAGAUCAUCAGCUCU	chrY:2722464-2722749(+)$1	285	9	28	14.7864
AUACCCUAAACAAGAAGCG	chr20:47905427-47905688(+)$1	261	88	107	13.7198
CCCGGUGAGUCGGACCGCC	chr22:50354821-50355077(+)$1	256	57	76	14.1968
GAUGCUGCGAUUCUACAGU	chr17:43213707-43213966(+)$1	259	184	203	13.4826
CCGCCCAGGUUAACAUGGG	chr16:2144107-2144361(-)$1	254	72	91	14.3423
GGCGGGAAGAAUAAAUCCG	chr14:95999857-96000063(-)$1	206	49	68	15.2927
GGCUGGGUCGCGUCUCCCU	chr20:62669815-62670105(+)$1	290	80	99	14.9337
CAUCCUGAACGUGACCAGU	chr3:50338116-50338387(-)$1	271	206	225	14.2485
UAUCAAGGGUAAGGACUUG	chr20:61909309-61909577(+)$1	268	238	257	14.3611
UCCCUGCUUUUAUUUGUAG	chr2:216248115-216248355(-)$1	240	130	149	14.3106
UACCAGAAUUCCCAGUCUG	chr2:11728725-11728992(+)$1	267	217	236	14.4941

#DB
))))(((........)))(	chr1:8074314-8074581(-)$1	1	18	37	13.0263
(((((((........))))	chr14:24035594-24035843(-)$1	1	15	34	14.1968
(((((((........))))	chr17:41464599-41464863(-)$1	1	123	142	14.3087
..(((((........)).)	chr16:89627122-89627340(+)$1	1	21	40	13.8107
(((.(((........))).	chr22:50875262-50875511(+)$1	1	22	41	14.9106
(((..((........)).)	chr11:62621215-62621430(-)$1	1	76	95	13.8810
.((((((........))))	chr2:27427802-27428030(-)$1	1	70	89	13.2055
).(((((........))))	chr19:39195406-39195669(+)$1	1	168	187	13.2222
...((((........))))	chr11:2156661-2156924(-)$1	1	108	127	14.7864
(((((((........))))	chr20:398018-398277(+)$1	1	132	151	13.8150
(((((((........)).)	chr17:80010989-80011241(+)$1	1	78	97	13.7198
..(.(((........))).	chr10:135107163-135107420(-)$1	1	36	55	15.1777
....(((........))).	chr21:46910015-46910276(+)$1	1	29	48	14.1174
.)))(((........)))(	chr16:89263717-89263979(-)$1	1	166	185	14.4654
.))((((........))))	chr20:43052471-43052748(+)$1	1	137	156	13.7197
((((.((........)).)	chr9:139723676-139723952(+)$1	1	197	216	13.6936
((((.((........)).)	chr20:57478413-57478665(+)$1	1	68	87	13.7378
(((.(((........))))	chr3:47456571-47456830(-)$1	1	30	49	14.6191
(((.(((........))).	chr22:46684149-46684419(+)$1	1	210	229	14.9737
(((((((........))))	chr1:110171545-110171819(+)$1	1	224	243	14.4694
(((((((........))))	chr1:19216506-19216766(-)$1	1	16	35	14.1253
(..((((........))))	chr19:6702495-6702738(-)$1	1	65	84	14.6606
((..(((........))).	chr3:148925255-148925556(-)$1	1	150	169	15.0173
((.((((........))))	chr5:149907203-149907466(+)$1	1	54	73	14.3106
..(((.(........).))	chr2:27448843-27449096(+)$1	1	29	48	14.2457
(.(((((........))))	chr17:41613747-41613996(-)$1	1	189	208	14.3112
((.((((........))))	chr9:117012690-117012999(+)$1	1	39	58	14.3106
..(((((........))))	chr20:21195006-21195250(+)$1	1	57	76	14.4762
...((((........))))	chr1:17945684-17945925(+)$1	1	187	206	14.6728
((((..(........)..)	chr16:67983768-67984006(-)$1	1	130	149	13.2712
((..(((........))).	chr7:1529220-1529498(-)$1	1	249	268	15.0245
(((((((........))))	chr2:101587281-101587542(+)$1	1	153	172	14.2408
((..(((........))).	chr3:33071662-33071899(-)$1	1	194	213	15.0173
((..(((........))))	chr20:47711111-47711346(+)$1	1	73	92	15.1564
(((.(((........))))	chr2:74592264-74592507(-)$1	1	167	186	14.6111
((.((((........))))	chr17:74308988-74309249(-)$1	1	216	235	14.7364
(((((((........))).	chr21:46899667-46899910(+)$1	1	21	40	14.2750
((...((........))))	chr13:111932724-111932998(+)$1	1	168	187	13.7772
..(((((........))))	chr5:177827310-177827539(-)$1	1	127	146	14.4762
.((((((........))))	chr9:130706851-130707120(-)$1	1	155	174	13.2055
(((((((........))))	chr19:19105155-19105413(-)$1	1	227	246	14.1724
((.((((........))))	chr3:48451875-48452113(-)$1	1	73	92	14.5037
(((((((........)).)	chr12:122234057-122234325(-)$1	1	120	139	13.7198
((.((((........))))	chr7:100286249-100286507(-)$1	1	107	126	14.8043
((((.((........))))	chr1:113241198-113241455(+)$1	1	214	233	13.7014
(((.(((........))).	chr20:36030691-36030933(+)$1	1	55	74	14.9932
((.((((........))))	chr17:40271069-40271355(-)$1	1	11	30	14.7364
((..(((........))).	chr3:133484967-133485203(+)$1	1	205	224	15.1633
(((((.(........).).	chr7:36247513-36247722(+)$1	1	161	180	13.6093
(.(.(((........))).	chr11:64899711-64899984(-)$1	1	93	112	15.0593
(((((((........))))	chr1:985456-985715(+)$1	1	199	218	14.1968
(((.(((........))))	chr16:782274-782541(-)$1	1	140	159	14.6111
((((..(........)..)	chr12:132475807-132476059(+)$1	1	166	185	13.6730
.(.((((........))))	chr17:42398829-42399065(-)$1	1	14	33	14.8185
(((.(((........))))	chr19:42790769-42791027(+)$1	1	93	112	15.0532
(((((((........))))	chr18:690527-690879(-)$1	1	100	119	13.0502
(((((((........))))	chr14:23395407-23395655(-)$1	1	52	71	14.2408
(((((((........))))	chrX:153579296-153579572(-)$1	1	80	99	14.1968
(((((((........))))	chr2:219296414-219296690(+)$1	1	154	173	13.8150
...((((........))))	chrY:2722464-2722749(+)$1	1	9	28	14.7864
(((((((........)).)	chr20:47905427-47905688(+)$1	1	88	107	13.7198
(((((((........))))	chr22:50354821-50355077(+)$1	1	57	76	14.1968
)).((((........))))	chr17:43213707-43213966(+)$1	1	184	203	13.4826
(.(((((........))))	chr16:2144107-2144361(-)$1	1	72	91	14.3423
..(.(((........))).	chr14:95999857-96000063(-)$1	1	49	68	15.2927
((..(((........))).	chr20:62669815-62670105(+)$1	1	80	99	14.9337
....(((........))).	chr3:50338116-50338387(-)$1	1	206	225	14.2485
..(((((........))))	chr20:61909309-61909577(+)$1	1	238	257	14.3611
((.((((........))))	chr2:216248115-216248355(-)$1	1	130	149	14.3106
)))((((........))))	chr2:11728725-11728992(+)$1	1	217	236	14.4941

#PSSM
e : 0.17	g : 0.14	c : 0.12	d : 0.11	! : 0.08	f : 0.08	b : 0.08	" : 0.05	i : 0.02	[ : 0.02	$ : 0.02	] : 0.02	# : 0.01	
e : 0.15	g : 0.14	c : 0.12	f : 0.11	d : 0.08	! : 0.08	b : 0.08	" : 0.05	[ : 0.04	i : 0.02	$ : 0.02	: : 0.01	# : 0.01	a : 0.01	
e : 0.24	[ : 0.11	g : 0.10	! : 0.10	f : 0.08	d : 0.07	c : 0.07	a : 0.07	" : 0.04	i : 0.02	$ : 0.02	b : 0.01	# : 0.01	: : 0.01	
d : 0.28	e : 0.22	[ : 0.14	! : 0.10	g : 0.08	f : 0.05	c : 0.04	$ : 0.02	i : 0.01	" : 0.01	
c : 0.32	d : 0.24	e : 0.20	g : 0.05	! : 0.04	f : 0.04	[ : 0.04	i : 0.01	" : 0.01	a : 0.01	
c : 0.30	d : 0.24	e : 0.15	b : 0.12	g : 0.05	f : 0.04	[ : 0.02	! : 0.02	i : 0.01	
c : 0.30	d : 0.24	e : 0.15	b : 0.12	g : 0.05	a : 0.05	f : 0.04	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.30	d : 0.24	e : 0.15	b : 0.12	g : 0.05	a : 0.05	f : 0.04	i : 0.01	
c : 0.30	d : 0.24	e : 0.15	b : 0.12	g : 0.05	f : 0.04	] : 0.02	2 : 0.02	i : 0.01	
c : 0.31	d : 0.24	e : 0.17	] : 0.10	g : 0.07	f : 0.04	2 : 0.02	i : 0.01	a : 0.01	
d : 0.27	e : 0.25	] : 0.12	g : 0.11	f : 0.07	2 : 0.05	c : 0.02	i : 0.02	I : 0.01	4 : 0.01	3 : 0.01	

#score	1000.0690041271713
#seq	70
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_CDS_m3_run1.txt

#BEAR
cc[a!!cccnnnnnccc22a]cc	chr9:116823655-116823896(-)$1	241	121	144	13.4345
'''a!!cccnnnnnccc22a333	chr15:93467450-93467819(+)$1	369	155	178	11.7180
eeeee[cccnnnnnccc]eeeee	chr15:66794025-66794235(-)$1	210	148	171	12.4978
[a"""ddddnnnnndddd22a]c	chr17:27003152-27003438(+)$1	286	77	100	11.0965
!ffffffbbnnnnnbb]ffffff	chr12:19592877-19593138(+)$1	261	153	176	11.1609
iiiiiiiiinnnnniiiiiiiii	chr1:93302927-93303256(+)$1	329	305	328	13.4653
c[gggggggnnnnnggggggg]c	chr13:99042108-99042375(+)$1	267	125	148	13.3633
iiiiiiiiooooooiiiiiiiii	chr2:207027112-207027329(+)$1	217	12	35	9.3526
eccc!!cccnnnnnccc]ccc::	chr4:140297498-140297730(+)$1	232	104	127	11.5007
bb!!eeeeennnnneeeee4444	chr7:134642892-134643128(+)$1	236	180	203	10.6509
dddccccccnnnnnccc]ccc::	chr5:52367686-52367950(+)$1	264	153	176	10.7931
========oooooo=========	chr2:11348344-11348675(-)$1	331	85	108	9.8279
cffffffbbnnnnnbb]ffffff	chr3:52834975-52835225(+)$1	250	181	204	11.0636
cc!!a[cccnnnnnccc]a22cc	chr11:129998972-129999201(+)$1	229	53	76	13.2192
cc[ccc!!annnnna22ccc]cc	chr17:79803477-79803718(-)$1	241	204	227	11.9530
ggggg[cccnnnnnccc]ggggg	chr6:129932579-129932814(-)$1	235	129	152	14.0307
eeee[ddddnnnnndddd]eeee	chr20:47752276-47752499(-)$1	223	149	172	10.3796
bb[ccccccnnnnnccc]ccc]b	chr5:149826283-149826576(-)$1	293	234	257	12.8785
"""ffffffnnnnnffffff]gg	chr5:132202573-132202837(+)$1	264	123	146	11.6821
""gggggggnnnnnggggggg22	chr13:79894605-79894911(-)$1	306	149	172	13.0642
fffff[a[annnnna]a]fffff	chr9:123287178-123287457(-)$1	279	40	63	11.7520
""eeeee[annnnna]eeeee22	chr2:42553253-42553492(+)$1	239	115	138	11.1779
iiiiiiiiinnnnniiiiiiiii	chr4:83277688-83277937(-)$1	249	185	208	13.4653
iiiiiiiiinnnnniiiiiiiii	chr2:55776871-55777215(-)$1	344	40	63	13.4653
b[ccc!!bbnnnnnbb22ccc]b	chrX:76918867-76919143(-)$1	276	177	200	12.1873
$$$$eeeeennnnneeeeegggg	chr3:37367421-37367673(+)$1	252	66	89	10.3908
ggggg[cccooooooccc]gggg	chr10:79796939-79797163(+)$1	224	3	26	9.5504
=========nnnnn=========	chr9:127620079-127620365(-)$1	286	221	244	13.9752
======[bbnnnnnbb]======	chr20:20563673-20563940(-)$1	267	187	210	13.4319
fffff!!bbnnnnnbb22fffff	chr22:36680350-36680593(-)$1	243	32	55	11.4215
eeeeee[bbnnnnnbb22eeeee	chr14:20924820-20925071(+)$1	251	196	219	10.9761
[a[ffffffnnnnnffffffa]c	chr15:93484950-93485286(+)$1	336	117	140	11.8231
iiiii!!bbnnnnnbb]iiiiii	chr20:8130887-8131120(+)$1	233	162	185	13.2322
c!!ccc[bbnnnnnbbccc]ccc	chr5:43294690-43294938(-)$1	248	199	222	12.4377
eee[a[cccnnnnnccc]a]eee	chr1:235345343-235345617(-)$1	274	145	168	12.9489
hh[bb[cccnnnnnccc22bb22	chr22:38890667-38890908(-)$1	241	207	230	11.9247
[dddd[cccnnnnncccdddd33	chr7:134642857-134643092(+)$1	235	103	126	12.2312
b[gggggggooooooggggggg]	chr2:54864769-54865009(+)$1	240	59	82	9.0524
::ccc[cccnnnnnccc333ccc	chr1:45242245-45242494(+)$1	249	78	101	11.7046
ddgggggggnnnnnggggggg22	chr2:27898369-27898651(+)$1	282	246	269	12.7074
dd[aa[cccnnnnnccc]a]a]d	chr18:47016786-47017022(-)$1	236	111	134	13.4160
[ccc[ddddnnnnnddddccc22	chr17:65821898-65822200(+)$1	302	134	157	11.0739
BBgggggggnnnnngggggggii	chr2:55461187-55461428(+)$1	241	60	83	11.3790
ee[ffffffnnnnnffffffeee	chr7:107569468-107569748(-)$1	280	38	61	11.0744
dddd!!cccnnnnncccdddd]a	chr20:3175832-3176097(-)$1	265	204	227	12.1315
c[gggggggnnnnngggggggcc	chr2:188368273-188368483(-)$1	210	174	197	13.1177
=========nnnnn=========	chr9:86591805-86592038(-)$1	233	35	58	13.9752
ggggg[cccnnnnncccgggggg	chrX:23803703-23803949(+)$1	246	61	84	13.8209
hhhhhh[bbnnnnnbb333hhhh	chr4:100522708-100522954(+)$1	246	32	55	11.2548
b[gggggggooooooggggggg]	chr2:54864749-54864958(+)$1	209	79	102	9.0524
dd####cccnnnnnccc4444dd	chr2:11347864-11348136(-)$1	272	28	51	12.2953
dddd!!cccnnnnnccc22dddd	chr10:79796850-79797103(+)$1	253	212	235	12.0012

#otherMatches

#Seq PSSM
ACGGCGGCUGCAUGGGCAACGGU	chr9:116823655-116823896(-)$1	241	121	144	13.4345
GAGCAGGGAAGUGAUCCAGGAAG	chr15:93467450-93467819(+)$1	369	155	178	11.7180
GUUCACAGUUUGUCACUUUGAAU	chr15:66794025-66794235(-)$1	210	148	171	12.4978
GAGAAAUACAAUGAGUAUGAUGA	chr17:27003152-27003438(+)$1	286	77	100	11.0965
GCAGCGACGAGACCCGCUCGUUG	chr12:19592877-19593138(+)$1	261	153	176	11.1609
GAAAUAGGUUUAUUACUUGUUUU	chr1:93302927-93303256(+)$1	329	305	328	13.4653
AUUCCUGAUGGCCAGUCGGGAUU	chr13:99042108-99042375(+)$1	267	125	148	13.3633
AACAAAUUGAGAUGGAUUUGUUU	chr2:207027112-207027329(+)$1	217	12	35	9.3526
GCCUUUGAGAUUUACUUUAGGAA	chr4:140297498-140297730(+)$1	232	104	127	11.5007
UGAACAGAAAUAGAUUCUGACUA	chr7:134642892-134643128(+)$1	236	180	203	10.6509
GCCCUUGAAGCCUAUUCUGAGAC	chr5:52367686-52367950(+)$1	264	153	176	10.7931
CAUUUUUAUUAUACUAGAAAUGG	chr2:11348344-11348675(-)$1	331	85	108	9.8279
UUGCAGGUAUgccuugucuugca	chr3:52834975-52835225(+)$1	250	181	204	11.0636
GGAAGCUAUGCUGAAUGACCGCC	chr11:129998972-129999201(+)$1	229	53	76	13.2192
ACUGCCAACGAGGUGGAGGCCGU	chr17:79803477-79803718(-)$1	241	204	227	11.9530
GAAUCAAGGUAAUCUCUGGGUUC	chr6:129932579-129932814(-)$1	235	129	152	14.0307
AGGACUUUGUAUUCUAAAAUCCU	chr20:47752276-47752499(-)$1	223	149	172	10.3796
CUGGGUGGUAGAAAACCUGCUGG	chr5:149826283-149826576(-)$1	293	234	257	12.8785
AUUCGGGAGUCUUUCUUUCGCGU	chr5:132202573-132202837(+)$1	264	123	146	11.6821
AAGAUGAUUUGACUGAUCAUUGA	chr13:79894605-79894911(-)$1	306	149	172	13.0642
GGGCUGUGCAGAGAGGAGAGCCC	chr9:123287178-123287457(-)$1	279	40	63	11.7520
GUGUGCUAGGAUUUCAAGUAUUU	chr2:42553253-42553492(+)$1	239	115	138	11.1779
GUGGUUAUGGAGGAUAUGACUAC	chr4:83277688-83277937(-)$1	249	185	208	13.4653
GUUUAAAGAAAAAAUUUUUAAAU	chr2:55776871-55777215(-)$1	344	40	63	13.4653
GGCACAAAUUGACUGUGAGUGAC	chrX:76918867-76919143(-)$1	276	177	200	12.1873
AGUCUUAGUAAACAACUAACUGA	chr3:37367421-37367673(+)$1	252	66	89	10.3908
CUCAUUCAGCAUGGCCUGUAUGA	chr10:79796939-79797163(+)$1	224	3	26	9.5504
ACUUCCACUGAUUGGGUGGAGGU	chr9:127620079-127620365(-)$1	286	221	244	13.9752
CUGAUGCUGAUGCCCGUCAUUGG	chr20:20563673-20563940(-)$1	267	187	210	13.4319
GCAGGGAGCGCCAGGCAGCCUGC	chr22:36680350-36680593(-)$1	243	32	55	11.4215
UAGGUGAGACCCUAUUGAUGCCU	chr14:20924820-20925071(+)$1	251	196	219	10.9761
GACUUUGAGACUGACUCAGAUGA	chr15:93484950-93485286(+)$1	336	117	140	11.8231
UUCAGUCGUUUACUACUUUGAAA	chr20:8130887-8131120(+)$1	233	162	185	13.2322
UUUCUAAGACCAAAUCUAGUGUC	chr5:43294690-43294938(-)$1	248	199	222	12.4377
CCAAAGAUCGAAAAGAUGUCUGG	chr1:235345343-235345617(-)$1	274	145	168	12.9489
AGUUGAGUGCCAACCACAACAUC	chr22:38890667-38890908(-)$1	241	207	230	11.9247
AGUGGUGUCAAAUCGACCCAUCA	chr7:134642857-134643092(+)$1	235	103	126	12.2312
UUUUUGUUACCAUUCUAAUAGAC	chr2:54864769-54865009(+)$1	240	59	82	9.0524
UCCUGUAACCUUGUGUUUUCCAG	chr1:45242245-45242494(+)$1	249	78	101	11.7046
uaauguauuauuuaaauauguuu	chr2:27898369-27898651(+)$1	282	246	269	12.7074
GGGCUGGACACAAGGUCGGUGGC	chr18:47016786-47017022(-)$1	236	111	134	13.4160
AGCUCGCCCAGGGGGGGCAGCAG	chr17:65821898-65822200(+)$1	302	134	157	11.0739
UCAUUAGGAAUUCCUCCUGAUCA	chr2:55461187-55461428(+)$1	241	60	83	11.3790
CACUGAGAGUACUUUUUUCAUGU	chr7:107569468-107569748(-)$1	280	38	61	11.0744
CCAUGACUGAGGAACAGGUGGGC	chr20:3175832-3176097(-)$1	265	204	227	12.1315
UACCAUAGUUUUCCAUUGUGGAG	chr2:188368273-188368483(-)$1	210	174	197	13.1177
AAGGCAAAAUAAUUUUUUGUCUU	chr9:86591805-86592038(-)$1	233	35	58	13.9752
AAAUGUCACUGAGUGUGUGUUUU	chrX:23803703-23803949(+)$1	246	61	84	13.8209
UUUUAUCCCUGUUUGGUUAAUAG	chr4:100522708-100522954(+)$1	246	32	55	11.2548
UUUUUGUUACCAUUCUAAUAGAC	chr2:54864749-54864958(+)$1	209	79	102	9.0524
UUAUACCAACUUCAUUGAUUAGA	chr2:11347864-11348136(-)$1	272	28	51	12.2953
GUAUAGUUCAUUAAGGAAAAUAU	chr10:79796850-79797103(+)$1	253	212	235	12.0012

#DB
((.(..(((.....)))..).))	chr9:116823655-116823896(-)$1	1	121	144	13.4345
...(..(((.....)))..)...	chr15:93467450-93467819(+)$1	1	155	178	11.7180
(((((.(((.....))).)))))	chr15:66794025-66794235(-)$1	1	148	171	12.4978
.(...((((.....))))..).)	chr17:27003152-27003438(+)$1	1	77	100	11.0965
.((((((((.....)).))))))	chr12:19592877-19593138(+)$1	1	153	176	11.1609
(((((((((.....)))))))))	chr1:93302927-93303256(+)$1	1	305	328	13.4653
(.(((((((.....))))))).)	chr13:99042108-99042375(+)$1	1	125	148	13.3633
((((((((......)))))))))	chr2:207027112-207027329(+)$1	1	12	35	9.3526
)(((..(((.....))).)))..	chr4:140297498-140297730(+)$1	1	104	127	11.5007
((..(((((.....)))))....	chr7:134642892-134643128(+)$1	1	180	203	10.6509
)))((((((.....))).)))..	chr5:52367686-52367950(+)$1	1	153	176	10.7931
((((((((......)))))))))	chr2:11348344-11348675(-)$1	1	85	108	9.8279
(((((((((.....)).))))))	chr3:52834975-52835225(+)$1	1	181	204	11.0636
((..(.(((.....))).)..))	chr11:129998972-129999201(+)$1	1	53	76	13.2192
((.(((..(.....)..))).))	chr17:79803477-79803718(-)$1	1	204	227	11.9530
(((((.(((.....))).)))))	chr6:129932579-129932814(-)$1	1	129	152	14.0307
((((.((((.....)))).))))	chr20:47752276-47752499(-)$1	1	149	172	10.3796
((.((((((.....))).))).)	chr5:149826283-149826576(-)$1	1	234	257	12.8785
...((((((.....)))))).))	chr5:132202573-132202837(+)$1	1	123	146	11.6821
..(((((((.....)))))))..	chr13:79894605-79894911(-)$1	1	149	172	13.0642
(((((.(.(.....).).)))))	chr9:123287178-123287457(-)$1	1	40	63	11.7520
..(((((.(.....).)))))..	chr2:42553253-42553492(+)$1	1	115	138	11.1779
(((((((((.....)))))))))	chr4:83277688-83277937(-)$1	1	185	208	13.4653
(((((((((.....)))))))))	chr2:55776871-55777215(-)$1	1	40	63	13.4653
(.(((..((.....))..))).)	chrX:76918867-76919143(-)$1	1	177	200	12.1873
....(((((.....)))))))))	chr3:37367421-37367673(+)$1	1	66	89	10.3908
(((((.(((......))).))))	chr10:79796939-79797163(+)$1	1	3	26	9.5504
(((((((((.....)))))))))	chr9:127620079-127620365(-)$1	1	221	244	13.9752
((((((.((.....)).))))))	chr20:20563673-20563940(-)$1	1	187	210	13.4319
(((((..((.....))..)))))	chr22:36680350-36680593(-)$1	1	32	55	11.4215
((((((.((.....))..)))))	chr14:20924820-20925071(+)$1	1	196	219	10.9761
.(.((((((.....))))))).)	chr15:93484950-93485286(+)$1	1	117	140	11.8231
(((((..((.....)).))))))	chr20:8130887-8131120(+)$1	1	162	185	13.2322
(..(((.((.....))))).)))	chr5:43294690-43294938(-)$1	1	199	222	12.4377
(((.(.(((.....))).).)))	chr1:235345343-235345617(-)$1	1	145	168	12.9489
((.((.(((.....)))..))..	chr22:38890667-38890908(-)$1	1	207	230	11.9247
.((((.(((.....)))))))..	chr7:134642857-134643092(+)$1	1	103	126	12.2312
(.(((((((......))))))).	chr2:54864769-54865009(+)$1	1	59	82	9.0524
..(((.(((.....)))...)))	chr1:45242245-45242494(+)$1	1	78	101	11.7046
(((((((((.....)))))))..	chr2:27898369-27898651(+)$1	1	246	269	12.7074
((.((.(((.....))).).).)	chr18:47016786-47017022(-)$1	1	111	134	13.4160
.(((.((((.....)))))))..	chr17:65821898-65822200(+)$1	1	134	157	11.0739
(((((((((.....)))))))((	chr2:55461187-55461428(+)$1	1	60	83	11.3790
((.((((((.....)))))))))	chr7:107569468-107569748(-)$1	1	38	61	11.0744
((((..(((.....))))))).)	chr20:3175832-3176097(-)$1	1	204	227	12.1315
(.(((((((.....)))))))))	chr2:188368273-188368483(-)$1	1	174	197	13.1177
(((((((((.....)))))))))	chr9:86591805-86592038(-)$1	1	35	58	13.9752
(((((.(((.....)))))))))	chrX:23803703-23803949(+)$1	1	61	84	13.8209
((((((.((.....))...))))	chr4:100522708-100522954(+)$1	1	32	55	11.2548
(.(((((((......))))))).	chr2:54864749-54864958(+)$1	1	79	102	9.0524
((....(((.....)))....))	chr2:11347864-11348136(-)$1	1	28	51	12.2953
((((..(((.....)))..))))	chr10:79796850-79797103(+)$1	1	212	235	12.0012

#PSSM
c : 0.13	e : 0.11	d : 0.11	i : 0.09	b : 0.09	[ : 0.07	= : 0.07	g : 0.05	" : 0.05	f : 0.03	h : 0.03	' : 0.01	! : 0.01	$ : 0.01	: : 0.01	B : 0.01	
d : 0.13	c : 0.09	e : 0.09	i : 0.09	[ : 0.09	f : 0.07	= : 0.07	g : 0.05	" : 0.05	a : 0.03	b : 0.03	h : 0.03	' : 0.01	$ : 0.01	! : 0.01	: : 0.01	B : 0.01	
g : 0.19	[ : 0.13	e : 0.09	i : 0.09	f : 0.07	c : 0.07	d : 0.07	= : 0.07	! : 0.05	" : 0.03	' : 0.01	$ : 0.01	h : 0.01	# : 0.01	
g : 0.19	c : 0.15	f : 0.13	i : 0.09	e : 0.07	= : 0.07	a : 0.05	d : 0.05	! : 0.03	" : 0.01	$ : 0.01	[ : 0.01	b : 0.01	h : 0.01	# : 0.01	
g : 0.19	f : 0.13	c : 0.11	! : 0.09	e : 0.09	i : 0.09	= : 0.07	a : 0.05	[ : 0.03	" : 0.01	b : 0.01	d : 0.01	h : 0.01	# : 0.01	
[ : 0.21	! : 0.15	g : 0.13	f : 0.09	i : 0.07	e : 0.07	c : 0.07	= : 0.07	d : 0.05	h : 0.01	# : 0.01	
c : 0.34	g : 0.13	f : 0.09	i : 0.07	! : 0.07	[ : 0.07	d : 0.05	e : 0.05	= : 0.05	a : 0.01	
c : 0.34	b : 0.17	g : 0.13	i : 0.07	d : 0.05	= : 0.05	f : 0.05	e : 0.03	[ : 0.03	! : 0.01	
c : 0.34	b : 0.17	g : 0.13	d : 0.05	i : 0.05	a : 0.05	f : 0.05	o : 0.03	e : 0.03	= : 0.03	
n : 0.90	o : 0.09	
n : 0.90	o : 0.09	
n : 0.90	o : 0.09	
n : 0.90	o : 0.09	
n : 0.90	o : 0.09	
c : 0.32	b : 0.17	g : 0.09	i : 0.07	d : 0.05	= : 0.05	a : 0.05	f : 0.05	o : 0.05	e : 0.03	
c : 0.34	b : 0.17	g : 0.13	i : 0.07	d : 0.05	= : 0.05	f : 0.05	e : 0.03	] : 0.03	2 : 0.01	
c : 0.36	g : 0.13	] : 0.07	i : 0.07	2 : 0.07	d : 0.05	e : 0.05	= : 0.05	f : 0.05	a : 0.01	3 : 0.01	
] : 0.17	g : 0.15	2 : 0.13	d : 0.09	f : 0.09	i : 0.09	= : 0.07	e : 0.05	c : 0.05	3 : 0.03	4 : 0.01	
g : 0.17	f : 0.13	c : 0.13	2 : 0.09	e : 0.09	i : 0.09	= : 0.07	a : 0.05	] : 0.03	d : 0.03	3 : 0.03	4 : 0.01	
g : 0.21	f : 0.13	c : 0.11	i : 0.09	e : 0.07	= : 0.07	] : 0.05	d : 0.05	a : 0.03	2 : 0.03	4 : 0.03	b : 0.01	3 : 0.01	h : 0.01	
g : 0.21	c : 0.13	e : 0.11	i : 0.09	f : 0.07	= : 0.07	] : 0.05	a : 0.05	d : 0.05	4 : 0.03	3 : 0.01	2 : 0.01	b : 0.01	h : 0.01	
] : 0.13	g : 0.13	c : 0.11	i : 0.11	e : 0.09	2 : 0.09	f : 0.07	= : 0.07	3 : 0.03	: : 0.03	d : 0.03	4 : 0.01	h : 0.01	
c : 0.17	i : 0.11	e : 0.09	g : 0.09	2 : 0.09	f : 0.07	= : 0.07	d : 0.05	3 : 0.03	: : 0.03	b : 0.03	] : 0.03	4 : 0.01	a : 0.01	h : 0.01	

#score	621.5831000356541
#seq	52
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF546ZFM_MTPAP_UTR_m2_run1.txt

#BEAR
cccccvvvvvvvvvvvvvccc]	chr19:55648369-55648602(-)$1	233	52	74	20.5858
hhhhhhvvvvvvvvvvvvvhhh	chr16:89350278-89350557(-)$1	279	201	223	18.9749
eeeeevvvvvvvvvvvvveeee	chr12:56565412-56565663(-)$1	251	228	250	19.9527
ffffffxxxxxxxxxxxxxxxf	chr19:14628230-14628478(-)$1	248	198	220	15.2007
[eeeeevvvvvvvvvvvvveee	chr7:5781130-5781385(-)$1	255	218	240	20.3479
iiii[avvvvvvvvvvvvvaii	chr1:59248923-59249177(-)$1	254	218	240	20.4024
hhhhhhvvvvvvvvvvvvvhhh	chr9:100777582-100777870(+)$1	288	196	218	18.9749
f[acccuuuuuuuuuuuuccc]	chr1:39776511-39776770(+)$1	259	50	72	22.0107
Bddddvvvvvvvvvvvvvdddd	chr15:63351711-63351977(+)$1	266	149	171	19.3543
ffddddtttttttttttdddd:	chr16:89336689-89336955(-)$1	266	219	241	19.4470
bb:ccctttttttttttccc::	chr22:20918734-20918988(+)$1	254	201	223	17.6791
======xxxxxxxxxxxxxxx=	chr5:70785345-70785619(+)$1	274	196	218	16.2125
ffffffxxxxxxxxxxxxxxxf	chrX:153178677-153178968(-)$1	291	254	276	15.2007
!!a[bbtttttttttttbb]a2	chr16:89350128-89350409(-)$1	281	109	131	19.9235
eeeeeuuuuuuuuuuuueeeee	chr16:14721940-14722209(-)$1	269	55	77	20.1577
!!ddddvvvvvvvvvvvvvddd	chr7:155504008-155504250(+)$1	242	164	186	20.9473
####bbtttttttttttbb22h	chr6:31696958-31697209(-)$1	251	9	31	19.2602
!eeeeeuuuuuuuuuuuueeee	chr20:61912565-61912782(+)$1	217	160	182	21.4148
hhhhhhuuuuuuuuuuuuhhhh	chr19:47228694-47228956(-)$1	262	31	53	19.7322
c[ddddxxxxxxxxxxxxxxxd	chr19:58817388-58817669(+)$1	281	139	161	16.4156
ccddddtttttttttttdddd]	chr19:10264870-10265089(-)$1	219	163	185	20.5083
ffffffyyyyyyyyyyyyyyyy	chr2:29169501-29169829(+)$1	328	157	179	18.5538
ddd[bbuuuuuuuuuuuubb]d	chr15:63352973-63353240(+)$1	267	58	80	20.6069
ee!!cccssssssssssccc22	chr19:17379673-17379943(+)$1	270	104	126	14.4021
dddddduuuuuuuuuuuudddd	chr17:7849081-7849342(+)$1	261	203	225	21.3925
[a[cccssssssssssccc22a	chrX:53439746-53440050(-)$1	304	72	94	14.3336
fff[bbtttttttttttbb22f	chr22:21224523-21224820(+)$1	297	185	207	19.0279
!eeeeexxxxxxxxxxxxxxxe	chr15:69072334-69072584(-)$1	250	166	188	16.0548
""eeeeesssssssssseeeee	chr13:31035388-31035658(-)$1	270	22	44	14.0005
!!dddduuuuuuuuuuuudddd	chr14:56078636-56078964(+)$1	328	80	102	22.0203
e:ddddtttttttttttdddd:	chr3:42676714-42676959(+)$1	245	83	105	18.5826
$ddddvvvvvvvvvvvvvdddd	chr3:9489509-9489768(+)$1	259	162	184	20.1624
bb!!cccssssssssssccc22	chr5:137501416-137501664(-)$1	248	101	123	14.0806
ggggggtttttttttttggggg	chr20:62572796-62573124(-)$1	328	256	278	19.6454
gggggguuuuuuuuuuuugggg	chr9:35689852-35690156(-)$1	304	10	32	21.0455
[a[cccvvvvvvvvvvvvvccc	chr14:105929467-105929693(+)$1	226	27	49	20.9089
e!!cccuuuuuuuuuuuuccc2	chr1:24989050-24989305(+)$1	255	64	86	21.9726
""ddddtttttttttttdddd3	chr1:70716368-70716692(+)$1	324	140	162	20.7422
ddd[cccsssssssssscccdd	chr1:59249180-59249443(-)$1	263	69	91	14.3643
$$ddddtttttttttttdddd5	chr3:184043013-184043250(+)$1	237	204	226	19.5070
ccbbbbuuuuuuuuuuuubb]b	chr8:145650507-145650760(-)$1	253	130	152	19.9030
eeeeeuuuuuuuuuuuueeeee	chr15:41641297-41641535(+)$1	238	47	69	20.1577
f[ddddxxxxxxxxxxxxxxxd	chr5:65474543-65474846(+)$1	303	216	238	16.3266
iiiiiivvvvvvvvvvvvviii	chr11:47446637-47446893(-)$1	256	199	221	20.2446
cccyyyyyyyyyyyyyyyyccc	chr16:89357113-89357335(-)$1	222	164	186	19.0087
a[ddddxxxxxxxxxxxxxxxd	chr3:128211706-128211984(+)$1	278	73	95	16.4058
###ccctttttttttttccc55	chr16:57200904-57201194(-)$1	290	43	65	19.4429
ddddwwwwwwwwwwwwwwdddd	chr2:132021392-132021670(+)$1	278	56	78	20.0196
b[cccwwwwwwwwwwwwwwccc	chr19:10261973-10262290(-)$1	317	140	162	20.9373
cccccctttttttttttccc::	chr22:20918795-20919036(+)$1	241	140	162	19.1538

#otherMatches

#Seq PSSM
GGGCGGGAGAUGAAGGUGCGCA	chr19:55648369-55648602(-)$1	233	52	74	20.5858
ACAGGGACAUGAAGAGCGACUC	chr16:89350278-89350557(-)$1	279	201	223	18.9749
CCUUCUUAGUUUGCUUUUGAAG	chr12:56565412-56565663(-)$1	251	228	250	19.9527
AAAAACUCCCUAUUUAUUUUUG	chr19:14628230-14628478(-)$1	248	198	220	15.2007
AGUCAUAACCAAGCAGCAAAUG	chr7:5781130-5781385(-)$1	255	218	240	20.3479
CGGGAGGCAUCUUAAUUAACCC	chr1:59248923-59249177(-)$1	254	218	240	20.4024
CUGUUUAAAAAAAAAAAAAAGG	chr9:100777582-100777870(+)$1	288	196	218	18.9749
CGCCUGGAGGAGUAUGAACAGA	chr1:39776511-39776770(+)$1	259	50	72	22.0107
CGACCGCAAAUAUGAAGAGGUC	chr15:63351711-63351977(+)$1	266	149	171	19.3543
UUACAGUCAGCGUCACCCUGUA	chr16:89336689-89336955(-)$1	266	219	241	19.4470
gcagcaUCUAAUUAAAUUGCAU	chr22:20918734-20918988(+)$1	254	201	223	17.6791
AUUACUUGAGAAGACAUGUACA	chr5:70785345-70785619(+)$1	274	196	218	16.2125
CUGCAGGCCAAGCACGAGAAGC	chrX:153178677-153178968(-)$1	291	254	276	15.2007
GACAGCAAGGAGAGGAGGCGGG	chr16:89350128-89350409(-)$1	281	109	131	19.9235
UUAGUAUUUAUUAGUAAGCUAA	chr16:14721940-14722209(-)$1	269	55	77	20.1577
UAAAGCAUagauggccccagcu	chr7:155504008-155504250(+)$1	242	164	186	20.9473
CUCCUCUUAAAGAAUCUGACCC	chr6:31696958-31697209(-)$1	251	9	31	19.2602
CGUCCCCACCAGGCCCUCGGGA	chr20:61912565-61912782(+)$1	217	160	182	21.4148
GCAGCUCCCCCCAACCCCAGCU	chr19:47228694-47228956(-)$1	262	31	53	19.7322
gaucagacgaacuacgaacccc	chr19:58817388-58817669(+)$1	281	139	161	16.4156
AGCCUCUGGCCUGAUCUGAGGA	chr19:10264870-10265089(-)$1	219	163	185	20.5083
AGCCGGUCAAACUAUAUAAACU	chr2:29169501-29169829(+)$1	328	157	179	18.5538
GACCCAUGGUGUGUGUGUUGUG	chr15:63352973-63353240(+)$1	267	58	80	20.6069
GCCGCCAGUGCUGAUGAUGGGA	chr19:17379673-17379943(+)$1	270	104	126	14.4021
AGACCUCACUUCAUCCACAGGU	chr17:7849081-7849342(+)$1	261	203	225	21.3925
GGCCUCAaagaacaaggagauc	chrX:53439746-53440050(-)$1	304	72	94	14.3336
CACAUCAAUAGCAUUAAGAGCG	chr22:21224523-21224820(+)$1	297	185	207	19.0279
UGGAAUAACCUAUUUUGAAAAA	chr15:69072334-69072584(-)$1	250	166	188	16.0548
AUGCAGCAAAAAAGGGAGUUGU	chr13:31035388-31035658(-)$1	270	22	44	14.0005
CCACCUUCUUCCCUAUUUAGGU	chr14:56078636-56078964(+)$1	328	80	102	22.0203
AAAUGCAGAGAUUAAGAGCAUA	chr3:42676714-42676959(+)$1	245	83	105	18.5826
AUACCCCAAAACCAAAAAGGUA	chr3:9489509-9489768(+)$1	259	162	184	20.1624
UGGAUUUUGAGACUGUUGGAGA	chr5:137501416-137501664(-)$1	248	101	123	14.0806
UUCUGCUUCCUCUUAGCGCAGG	chr20:62572796-62573124(-)$1	328	256	278	19.6454
CGUCGGCCACUUUUUCCUCCGA	chr9:35689852-35690156(-)$1	304	10	32	21.0455
UGUGUGACACGCCUCCUCCCAC	chr14:105929467-105929693(+)$1	226	27	49	20.9089
ACCUAAUGUAAUAUUUUUUUAA	chr1:24989050-24989305(+)$1	255	64	86	21.9726
CAACUGUAUACCUGCAUCAGUG	chr1:70716368-70716692(+)$1	324	140	162	20.7422
CGGAGACAAGUGGCAGAGUCCC	chr1:59249180-59249443(-)$1	263	69	91	14.3643
CUUGUCUUGCCUUCCCUGACAU	chr3:184043013-184043250(+)$1	237	204	226	19.5070
GCCGAGCUACAAGCCCCACUAC	chr8:145650507-145650760(-)$1	253	130	152	19.9030
UCAGCAACCAGGAAGAAGCUGA	chr15:41641297-41641535(+)$1	238	47	69	20.1577
CAAGAUGUAAACAGGAAAGAAA	chr5:65474543-65474846(+)$1	303	216	238	16.3266
ACCUUGUCUCCAACGUCAUCGA	chr11:47446637-47446893(-)$1	256	199	221	20.2446
UCAAAAACCAAAGAUAAAGUGA	chr16:89357113-89357335(-)$1	222	164	186	19.0087
ggccUGGAGUAGAGCUGGGAGC	chr3:128211706-128211984(+)$1	278	73	95	16.4058
ACUGGUAACUCACAAUAACCUC	chr16:57200904-57201194(-)$1	290	43	65	19.4429
GGCCCCCCUGAACCCCAAGGCC	chr2:132021392-132021670(+)$1	278	56	78	20.0196
CACCCAAAAAAAUGCACCAGGG	chr19:10261973-10262290(-)$1	317	140	162	20.9373
gcagcaUCUAAUUAAAUUGCAU	chr22:20918795-20919036(+)$1	241	140	162	19.1538

#DB
(((((.............))).	chr19:55648369-55648602(-)$1	1	52	74	20.5858
((((((.............)))	chr16:89350278-89350557(-)$1	1	201	223	18.9749
(((((.............))))	chr12:56565412-56565663(-)$1	1	228	250	19.9527
((((((...............)	chr19:14628230-14628478(-)$1	1	198	220	15.2007
.(((((.............)))	chr7:5781130-5781385(-)$1	1	218	240	20.3479
((((.(.............)))	chr1:59248923-59249177(-)$1	1	218	240	20.4024
((((((.............)))	chr9:100777582-100777870(+)$1	1	196	218	18.9749
(.((((............))).	chr1:39776511-39776770(+)$1	1	50	72	22.0107
)((((.............))))	chr15:63351711-63351977(+)$1	1	149	171	19.3543
))((((...........)))).	chr16:89336689-89336955(-)$1	1	219	241	19.4470
)).(((...........)))..	chr22:20918734-20918988(+)$1	1	201	223	17.6791
((((((...............)	chr5:70785345-70785619(+)$1	1	196	218	16.2125
((((((...............)	chrX:153178677-153178968(-)$1	1	254	276	15.2007
..(.((...........)).).	chr16:89350128-89350409(-)$1	1	109	131	19.9235
(((((............)))))	chr16:14721940-14722209(-)$1	1	55	77	20.1577
..((((.............)))	chr7:155504008-155504250(+)$1	1	164	186	20.9473
....((...........))..)	chr6:31696958-31697209(-)$1	1	9	31	19.2602
.(((((............))))	chr20:61912565-61912782(+)$1	1	160	182	21.4148
((((((............))))	chr19:47228694-47228956(-)$1	1	31	53	19.7322
(.((((...............)	chr19:58817388-58817669(+)$1	1	139	161	16.4156
((((((...........)))).	chr19:10264870-10265089(-)$1	1	163	185	20.5083
((((((................	chr2:29169501-29169829(+)$1	1	157	179	18.5538
(((.((............)).)	chr15:63352973-63353240(+)$1	1	58	80	20.6069
((..(((..........)))..	chr19:17379673-17379943(+)$1	1	104	126	14.4021
((((((............))))	chr17:7849081-7849342(+)$1	1	203	225	21.3925
.(.(((..........)))..)	chrX:53439746-53440050(-)$1	1	72	94	14.3336
(((.((...........))..)	chr22:21224523-21224820(+)$1	1	185	207	19.0279
.(((((...............)	chr15:69072334-69072584(-)$1	1	166	188	16.0548
..(((((..........)))))	chr13:31035388-31035658(-)$1	1	22	44	14.0005
..((((............))))	chr14:56078636-56078964(+)$1	1	80	102	22.0203
).((((...........)))).	chr3:42676714-42676959(+)$1	1	83	105	18.5826
.((((.............))))	chr3:9489509-9489768(+)$1	1	162	184	20.1624
((..(((..........)))..	chr5:137501416-137501664(-)$1	1	101	123	14.0806
((((((...........)))))	chr20:62572796-62573124(-)$1	1	256	278	19.6454
((((((............))))	chr9:35689852-35690156(-)$1	1	10	32	21.0455
.(.(((.............)))	chr14:105929467-105929693(+)$1	1	27	49	20.9089
(..(((............))).	chr1:24989050-24989305(+)$1	1	64	86	21.9726
..((((...........)))).	chr1:70716368-70716692(+)$1	1	140	162	20.7422
(((.(((..........)))))	chr1:59249180-59249443(-)$1	1	69	91	14.3643
..((((...........)))).	chr3:184043013-184043250(+)$1	1	204	226	19.5070
((((((............)).)	chr8:145650507-145650760(-)$1	1	130	152	19.9030
(((((............)))))	chr15:41641297-41641535(+)$1	1	47	69	20.1577
(.((((...............)	chr5:65474543-65474846(+)$1	1	216	238	16.3266
((((((.............)))	chr11:47446637-47446893(-)$1	1	199	221	20.2446
(((................)))	chr16:89357113-89357335(-)$1	1	164	186	19.0087
(.((((...............)	chr3:128211706-128211984(+)$1	1	73	95	16.4058
...(((...........)))..	chr16:57200904-57201194(-)$1	1	43	65	19.4429
((((..............))))	chr2:132021392-132021670(+)$1	1	56	78	20.0196
(.(((..............)))	chr19:10261973-10262290(-)$1	1	140	162	20.9373
)))(((...........)))..	chr22:20918795-20919036(+)$1	1	140	162	19.1538

#PSSM
f : 0.14	c : 0.12	e : 0.12	! : 0.10	d : 0.08	h : 0.06	[ : 0.06	b : 0.06	i : 0.04	# : 0.04	" : 0.04	$ : 0.04	g : 0.04	B : 0.02	= : 0.02	a : 0.02	
e : 0.14	d : 0.12	c : 0.10	f : 0.10	[ : 0.10	! : 0.08	h : 0.06	i : 0.04	b : 0.04	# : 0.04	a : 0.04	" : 0.04	g : 0.04	= : 0.02	: : 0.02	$ : 0.02	
d : 0.32	e : 0.14	c : 0.08	f : 0.08	h : 0.06	! : 0.06	i : 0.04	a : 0.04	# : 0.04	[ : 0.04	g : 0.04	: : 0.02	= : 0.02	b : 0.02	
d : 0.27	c : 0.18	e : 0.14	[ : 0.08	h : 0.06	f : 0.06	i : 0.04	! : 0.04	g : 0.04	= : 0.02	# : 0.02	b : 0.02	y : 0.02	
d : 0.25	c : 0.23	e : 0.14	b : 0.10	h : 0.06	f : 0.06	g : 0.04	[ : 0.02	= : 0.02	i : 0.02	y : 0.02	w : 0.02	
d : 0.21	c : 0.19	b : 0.10	v : 0.08	e : 0.08	h : 0.06	f : 0.06	u : 0.04	g : 0.04	w : 0.04	a : 0.02	= : 0.02	i : 0.02	y : 0.02	
t : 0.23	v : 0.21	u : 0.21	x : 0.14	c : 0.06	y : 0.04	w : 0.04	s : 0.02	e : 0.02	
t : 0.23	v : 0.21	u : 0.21	x : 0.14	s : 0.10	y : 0.04	w : 0.04	
t : 0.23	v : 0.21	u : 0.21	x : 0.14	s : 0.10	y : 0.04	w : 0.04	
t : 0.23	v : 0.21	u : 0.21	x : 0.14	s : 0.10	y : 0.04	w : 0.04	
t : 0.23	v : 0.21	u : 0.21	x : 0.14	s : 0.10	y : 0.04	w : 0.04	
t : 0.23	v : 0.21	u : 0.21	x : 0.14	s : 0.10	y : 0.04	w : 0.04	
t : 0.23	v : 0.21	u : 0.21	x : 0.14	s : 0.10	y : 0.04	w : 0.04	
t : 0.23	v : 0.21	u : 0.21	x : 0.14	s : 0.10	y : 0.04	w : 0.04	
t : 0.23	v : 0.21	u : 0.21	x : 0.14	s : 0.10	y : 0.04	w : 0.04	
t : 0.23	v : 0.21	u : 0.21	x : 0.14	s : 0.10	y : 0.04	w : 0.04	
t : 0.23	v : 0.21	u : 0.21	x : 0.14	s : 0.08	y : 0.04	w : 0.04	c : 0.02	
v : 0.21	u : 0.18	x : 0.14	c : 0.14	d : 0.10	b : 0.06	e : 0.06	y : 0.04	w : 0.04	g : 0.02	
c : 0.19	d : 0.19	v : 0.14	x : 0.14	e : 0.10	b : 0.10	y : 0.04	g : 0.04	h : 0.02	w : 0.02	
c : 0.23	d : 0.21	x : 0.14	e : 0.12	h : 0.06	2 : 0.06	b : 0.04	g : 0.04	a : 0.02	] : 0.02	y : 0.02	i : 0.02	
d : 0.23	x : 0.14	c : 0.12	e : 0.12	2 : 0.10	h : 0.06	i : 0.04	: : 0.04	] : 0.04	g : 0.04	a : 0.02	y : 0.02	5 : 0.02	
d : 0.21	e : 0.14	h : 0.08	: : 0.08	2 : 0.08	] : 0.06	f : 0.06	c : 0.06	i : 0.04	g : 0.04	5 : 0.04	= : 0.02	y : 0.02	a : 0.02	3 : 0.02	b : 0.02	

#score	945.7099175793097
#seq	50
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_CDS_m1_run1.txt

#BEAR
iii[ggggggg[ccc"""cccmmmmccc333ccc]ggggg	chr21:46876284-46876578(+)$1	294	20	60	15.7210
eee"""ccc[abb[bb!!cccoooooocccbbbb]a]ccc	chr10:75579269-75579544(-)$1	275	121	161	15.2467
gggbb[bbffffff[a[cccooooooccc]a]ffffff33	chr16:1825163-1825486(+)$1	323	72	112	16.8715
cffffff[hhhhhhhh[cccooooooccc]hhhhhhhhff	chr9:90345912-90346229(+)$1	317	196	236	15.3829
eeeeebbggggggg[a!!bboooooobb22aggggggg]b	chr19:2112844-2113152(-)$1	308	64	104	18.7709
"iiiiiiiii[gggggggrrrrrrrrrgggggggiiiiii	chr19:45867656-45867987(-)$1	331	134	174	13.8526
eeeddddccc[eeeee!!bboooooobb4444eeeeeccc	chr7:99755527-99755812(-)$1	285	70	110	16.6397
ddd[ccc[bb[dddd!!cccooooooccc]ddddbb]ccc	chr5:180651311-180651583(+)$1	272	153	193	16.1062
iii[ggggggg[ccc"""cccmmmmccc333ccc]ggggg	chr21:46876225-46876484(+)$1	259	79	119	15.7210
==========!!ccc!!cccnnnnnccc22ccc]======	chr17:77082264-77082515(+)$1	251	2	42	16.7327
eeeee[dddd[bb[a"""cccooooooccca]bbdddd]e	chr19:18548491-18548753(-)$1	262	137	177	14.7127
[eeeee[a!!ffffff[cccooooooccc22ffffff22a	chr3:48689702-48689974(-)$1	272	188	228	17.0100
cc####bbiiiiiiiii[bboooooobb]iiiiiiiii]b	chr9:35092145-35092458(-)$1	313	23	63	19.0008
ccc!!ggggggg!!bb[cccooooooccc]bb22gggggg	chr17:7230814-7231110(-)$1	296	142	182	17.6520
eeeee[ccc"""bb[a!!bboooooobb22a]bb22ccc]	chr16:89777097-89777384(-)$1	287	67	107	17.4646
a!!ccc[gggggggddddoooooodddd333ggggggg]c	chr11:65339937-65340249(+)$1	312	205	245	14.5949
b]ccciiiiiiiii"""cccooooooccc22iiiiiiiii	chr17:39975818-39976074(+)$1	256	149	189	19.4532
ggggg####ccc[dddd"""annnnna333ddddcccggg	chr5:150503816-150504179(-)$1	363	214	254	12.7047
eeeeeee[a"""bb"""cccaooooooa]ccc22bba]ee	chr7:6461241-6461515(-)$1	274	181	221	15.5782
dd!!iiiiiiiii[gggggggnnnnnggggggg]iiiiii	chr2:135676182-135676537(+)$1	355	226	266	14.2699
eee$$$$$ffffff####bboooooobb4444ffffff44	chr22:51142255-51142549(+)$1	294	5	45	16.5306
ddd[ccc[dddd!!ffffffooooooffffff333dddd]	chr9:139904886-139905157(-)$1	271	76	116	14.1865
ffff[ccc!!eeeee[cccbbnnnnnbb22ccc333eeee	chr16:706139-706431(+)$1	292	164	204	13.1357
""dddd[bb!!ccc"""cccoooooocccccc22bbdddd	chr9:35091947-35092238(-)$1	291	220	260	15.8240
iiiiiieeeee!!a[eeeeeooooooeeeeea]eeeee33	chr15:75651394-75651652(-)$1	258	89	129	14.5703
f$$$$$ggggggg!!a[cccmmmmccca22ggggggg333	chr17:7232436-7232707(-)$1	271	216	256	14.0445
eeeee!!a[ffffff[a[bboooooobbaffffff22a22	chr2:220422011-220422302(-)$1	291	56	96	16.1162
[dddd!!ccc[iiiiiiiiillliiiiiiiii333ccc22	chr5:1073585-1073866(-)$1	281	119	159	13.6271
cc####bbiiiiiiiii[bboooooobb]iiiiiiiii]b	chr9:35092384-35092639(-)$1	255	204	244	19.0008
ee:ccc!!hhhhhhhh[cccooooooccchhhhhhhhccc	chr17:27443353-27443609(-)$1	256	116	156	14.9137
cbb"""eeeee!!eeeeebboooooobb]eeeee]eeeee	chr8:21926761-21927040(+)$1	279	175	215	15.1057
eeee::a[============oooooo============]a	chr19:18728987-18729308(+)$1	321	179	219	17.5595
eeeee[ddddffffff[cccooooooccc]ffffff4444	chr10:103589510-103589751(-)$1	241	22	62	16.4356
22ccciiiiiiiii"""cccooooooccc22iiiiiiiii	chr17:39975792-39976011(+)$1	219	175	215	18.9703
========="""eeeee[bboooooobb]eeeee]=====	chr1:1562878-1563156(+)$1	278	97	137	18.2680
bb[ffffff[ccc[ffffffooooooffffff]cccffff	chr8:145689509-145689774(-)$1	265	194	234	13.6777
cccc[ffffff!!ccc!!bboooooobb4444cccfffff	chr13:111357955-111358243(-)$1	288	178	218	16.7174
e22ccc:iiiiiiiii[cccooooooccc]iiiiiiiii:	chr9:131904718-131904968(+)$1	250	109	149	16.9228
ffff!!a[a[dddd!!cccooooooccc22dddd]a]a22	chr7:766825-767118(-)$1	293	121	161	15.7166
$$$$bb[iiiiiiiii!!bboooooobb]iiiiiiiii]b	chr7:44799651-44799903(+)$1	252	11	51	18.3096
[bb[ccc===========rrrrrrrrr===========]c	chr9:139904814-139905086(-)$1	272	159	199	14.6953
[dddd!!bb!!eeeeecccooooooccc22eeeee]bb22	chr6:30457862-30458178(+)$1	316	215	255	14.6936
gggggggcccbb[ccc[cccooooooccc]ccc]bb22cc	chr2:241512950-241513312(+)$1	362	115	155	16.6762
iii[ggggggg[ccc"""cccmmmmccc333ccc]ggggg	chr21:46876093-46876425(+)$1	332	211	251	15.7210
$eeeee!!ccc[==========mmmm==========4444	chr20:60714666-60714934(-)$1	268	82	122	14.1644
====ccc[dddd[gggggggooooooggggggg]dddd]c	chr3:48454455-48454744(-)$1	289	77	117	15.9608
oeeeeeccc!!eeeee[cccooooooccc333eeeeeccc	chr1:156347823-156348090(+)$1	267	21	61	17.3892
cc####bbiiiiiiiii[bboooooobb]iiiiiiiii]b	chr9:35092272-35092526(-)$1	254	91	131	19.0008
b[eeeee[a!!eeeee!!bboooooobb]eeeee22a]ee	chr6:33248311-33248602(-)$1	291	1	41	16.3526
d:ffffff!!ccc!!bbcccooooooccc]bb]ccc]fff	chr16:2578491-2578745(+)$1	254	206	246	14.9568
b!!eeeee!!ffffff!!cccnnnnnccc]ffffff]eee	chr6:33405717-33406003(+)$1	286	1	41	12.8149
eee"""bb[dddda[eeeeeooooooeeeee]a333dddd	chr1:36787809-36788065(+)$1	256	164	204	14.1253
d[============!!a[cccmmmmccc22a22=======	chr14:103568727-103569060(+)$1	333	40	80	15.6946
dddd:ccc!!a[eeeee[bboooooobb]eeeee]a333c	chr17:39976055-39976283(+)$1	228	107	147	16.0285
FFFFa!!ccc!!ccc!!cccooooooccc]ccc22ccc22	chr12:57485368-57485657(+)$1	289	8	48	16.7489
beeeeeiiiiiiiii"""bboooooobb22iiiiiiiiid	chrX:153031617-153031875(+)$1	258	87	127	19.5580
:bb[==========!!ddddoooooodddd]=========	chr15:75650873-75651164(-)$1	291	58	98	16.4265

#otherMatches

#Seq PSSM
CGCACUGUCUCAGGUCGCAGUCACCACUUUAACCAGGGAC	chr21:46876284-46876578(+)$1	294	20	60	15.7210
gcccugcccugGCUGGCUAGCUGCCCCGCUCCGCACUGGG	chr10:75579269-75579544(-)$1	275	121	161	15.2467
CCAGGUGGGCUCUGGCAGAGGCCAAGCUCGGGCAGGGCAG	chr16:1825163-1825486(+)$1	323	72	112	16.8715
GUCGGAUACACACUCGAAUCAUUGAAGAUCCGAGUGUGAU	chr9:90345912-90346229(+)$1	317	196	236	15.3829
CUGUGGCCUCUCAGGCAGGCGUGAGGGCAAGCUGAGGGUG	chr19:2112844-2113152(-)$1	308	64	104	18.7709
GGGGUUGGGGUGGCAGGGCCCUGGUAACCCUGCUCCCCGG	chr19:45867656-45867987(-)$1	331	134	174	13.8526
GGGCCCUGCUACCUCAGGGGGAGCGACCACGGUGAGGAGC	chr7:99755527-99755812(-)$1	285	70	110	16.6397
gugcuggaggagguugaggaagaggaUCUAGACCCCGUCA	chr5:180651311-180651583(+)$1	272	153	193	16.1062
CGCACUGUCUCAGGUCGCAGUCACCACUUUAACCAGGGAC	chr21:46876225-46876484(+)$1	259	79	119	15.7210
GCUUUUGCCACCCAGUACCGGAUAGUGGACCUGCUGGUGG	chr17:77082264-77082515(+)$1	251	2	42	16.7327
GGAGAAGGGCACGGGACCCGGGAUUCACUGCGCGGCCUGU	chr19:18548491-18548753(-)$1	262	137	177	14.7127
AUUCAAGUGGGGGUUGGUGCGAGGGGGUGAAUGACCCAGA	chr3:48689702-48689974(-)$1	272	188	228	17.0100
CCUGACACCUGUGGCCUGGGGCCUGGUUGGGGCCAUAGCG	chr9:35092145-35092458(-)$1	313	23	63	19.0008
UGAAUGGGCGGGAUUGCGGUGUGGCUGCCACAGGCCUGCC	chr17:7230814-7231110(-)$1	296	142	182	17.6520
GCUGCUGCCCCCCGACCCCCAACCCCGGAAGCCGACGGCU	chr16:89777097-89777384(-)$1	287	67	107	17.4646
GAACGGGCUGCCCUCGGCAGAGGCGCCGGGCGGGGCGGGC	chr11:65339937-65340249(+)$1	312	205	245	14.5949
AACUGCCCAUUGUGUCUAGGCCACCCCCUCCCACAGUGGG	chr17:39975818-39976074(+)$1	256	149	189	19.4532
UUCAGACACCUGCUGAGUCUCUUUCUGCUUCUCACAGCUG	chr5:150503816-150504179(-)$1	363	214	254	12.7047
UUGCCUGUGAAUGCUGACCACACAGAAGAUGGGUGCCUCG	chr7:6461241-6461515(-)$1	274	181	221	15.5782
CGGAGGAGGAAGUGUCAUGGCGUCGGGCCGUGGAGCUUCU	chr2:135676182-135676537(+)$1	355	226	266	14.2699
UCCAUCAGCUCCCGAUACUCCCUUCAGAAACGCGGGAGGA	chr22:51142255-51142549(+)$1	294	5	45	16.5306
CCUGACCAAGGUGGGCUCUGGGCAUGUAGGGUGGGGCCUG	chr9:139904886-139905157(-)$1	271	76	116	14.1865
CACGAGGGCCCCGUCAGCUCAGUCUGUGUCAGCCCCGAUG	chr16:706139-706431(+)$1	292	164	204	13.1357
GAGGCUUGGAAUUGGGUUGCUUUUAUGUACAAGGCUAGCU	chr9:35091947-35092238(-)$1	291	220	260	15.8240
GUUGGGGUGGGAAGACUUUUGGUGUGGGAAGCCCCUACAG	chr15:75651394-75651652(-)$1	258	89	129	14.5703
CACUGGGCGCUUGGUGAGCCUGUCGGCCUGUGGGCGUACG	chr17:7232436-7232707(-)$1	271	216	256	14.0445
GCCAGGGGGCCCUGUACGCUGGUACAAGGACGGGGAGCGA	chr2:220422011-220422302(-)$1	291	56	96	16.1162
GUGGGCCGGGCGGGGUCUGGGGGCCAGGCCUCUUUCCCAC	chr5:1073585-1073866(-)$1	281	119	159	13.6271
CCUGACACCUGUGGCCUGGGGCCUGGUUGGGGCCAUAGCG	chr9:35092384-35092639(-)$1	255	204	244	19.0008
GCUGGUCCUUUGCCUUACAGAAGCUGCUGAAGGUAAAACC	chr17:27443353-27443609(-)$1	256	116	156	14.9137
CGGACAGCCGGUCGCCUGGAAUCAUCUCUCAGGCCUCGGC	chr8:21926761-21927040(+)$1	279	175	215	15.1057
GCCUGCCGGGCGGGGCAGGCGCUCGGGUCUGCCUCGCUGG	chr19:18728987-18729308(+)$1	321	179	219	17.5595
GAGUGUGAGGGGCCAGGUGUGUGUCUGCAGUUGGCCGGGU	chr10:103589510-103589751(-)$1	241	22	62	16.4356
AACUGCCCAUUGUGUCUAGGCCACCCCCUCCCACAGUGGG	chr17:39975792-39976011(+)$1	219	175	215	18.9703
cgggccuggcggggcugagccUGUGCGUCCAGCCACCGGG	chr1:1562878-1563156(+)$1	278	97	137	18.2680
GCUGGGCCUUGGCUGUAGGCAGCUGGGCUUACUGCCGGGC	chr8:145689509-145689774(-)$1	265	194	234	13.6777
UGGGUGUGAAUUGAGCAAGUAUGAAAACCCCGGCUAUUCA	chr13:111357955-111358243(-)$1	288	178	218	16.7174
CGAGGUGAGUGGGGGCUGGCCAGUGUGCCCGUCCCUGCUG	chr9:131904718-131904968(+)$1	250	109	149	16.9228
ugagagugugggguggcgugugggagcggggcccggggUG	chr7:766825-767118(-)$1	293	121	161	15.7166
UGUAUGGUGGGCUUCUAGGGUCAGGUCCAGGGGGCCCGGC	chr7:44799651-44799903(+)$1	252	11	51	18.3096
GUGGCCCCCUGGGCUCUGGAGGUGGGGCAGGGUCUGGGUG	chr9:139904814-139905086(-)$1	272	159	199	14.6953
CGGGUAUGAACAGUUCGCCUACGACGGCAAGGAUUAUCUC	chr6:30457862-30458178(+)$1	316	215	255	14.6936
CUGGGGUGGUCAGCCAGGCUGGGUGAGGUGUGGGUGUUAC	chr2:241512950-241513312(+)$1	362	115	155	16.6762
CGCACUGUCUCAGGUCGCAGUCACCACUUUAACCAGGGAC	chr21:46876093-46876425(+)$1	332	211	251	15.7210
CGCCAGUCUGAAGCAGGUGGGUGCCUGCCCGCUUGCAUGC	chr20:60714666-60714934(-)$1	268	82	122	14.1644
UGAGGCCGGGGUGUGCCUGGGGAUUGUCAGGCAGGCCUGG	chr3:48454455-48454744(-)$1	289	77	117	15.9608
ACCGGGCCUACCCAGCUGCUGCUCAUGGCCCUGCUGGAGG	chr1:156347823-156348090(+)$1	267	21	61	17.3892
CCUGACACCUGUGGCCUGGGGCCUGGUUGGGGCCAUAGCG	chr9:35092272-35092526(-)$1	254	91	131	19.0008
GCAGGGCAGGGCAAGGCCAGCCCACCCUCCCUUGAACAGC	chr6:33248311-33248602(-)$1	291	1	41	16.3526
CGGCACUUCCUGCAGGCCACAGGUCAGUGAGCAGCACGGG	chr16:2578491-2578745(+)$1	254	206	246	14.9568
UGACUGUGCCAGUGGCCACCCUGGCUGGGCGCCACUUCAC	chr6:33405717-33406003(+)$1	286	1	41	12.8149
CUGCCCGGUGCGCCAGAUCUCCCGCAGGAUCCGUUCGCGC	chr1:36787809-36788065(+)$1	256	164	204	14.1253
CACGCCGCGCCGCUGGCGCCAGCACUGGGAGGAGGCGGUG	chr14:103568727-103569060(+)$1	333	40	80	15.6946
GGGGAGGGAGGGUGGUUAUGGAAAAACAGAACCAGCAUAC	chr17:39976055-39976283(+)$1	228	107	147	16.0285
UGGCCAGGCCGGAGCACUCCAGAGUCGGACGUUGGGGCAG	chr12:57485368-57485657(+)$1	289	8	48	16.7489
CUCAGCCCGCGGCUGCCUGGCUCUUUCCCCCAGCUGCGGA	chrX:153031617-153031875(+)$1	258	87	127	19.5580
UUUGAUGAUGUCCCCUUGUACUGGGAUGCAUGGGACGUCA	chr15:75650873-75651164(-)$1	291	58	98	16.4265

#DB
(((.(((((((.(((...(((....)))...))).)))))	chr21:46876284-46876578(+)$1	1	20	60	15.7210
(((...(((.(((.((..(((......))))))).).)))	chr10:75579269-75579544(-)$1	1	121	161	15.2467
(((((.((((((((.(.(((......))).).))))))..	chr16:1825163-1825486(+)$1	1	72	112	16.8715
)((((((.((((((((.(((......))).))))))))))	chr9:90345912-90346229(+)$1	1	196	236	15.3829
)))))(((((((((.(..((......))..)))))))).)	chr19:2112844-2113152(-)$1	1	64	104	18.7709
.(((((((((.(((((((.........)))))))))))))	chr19:45867656-45867987(-)$1	1	134	174	13.8526
((((((((((.(((((..((......))....))))))))	chr7:99755527-99755812(-)$1	1	70	110	16.6397
(((.(((.((.((((..(((......))).)))))).)))	chr5:180651311-180651583(+)$1	1	153	193	16.1062
(((.(((((((.(((...(((....)))...))).)))))	chr21:46876225-46876484(+)$1	1	79	119	15.7210
((((((((((..(((..(((.....)))..))).))))))	chr17:77082264-77082515(+)$1	1	2	42	16.7327
(((((.((((.((.(...(((......)))).)))))).)	chr19:18548491-18548753(-)$1	1	137	177	14.7127
.(((((.(..((((((.(((......)))..))))))..)	chr3:48689702-48689974(-)$1	1	188	228	17.0100
((....(((((((((((.((......)).))))))))).)	chr9:35092145-35092458(-)$1	1	23	63	19.0008
(((..(((((((..((.(((......))).))..))))))	chr17:7230814-7231110(-)$1	1	142	182	17.6520
(((((.(((...((.(..((......))..).))..))).	chr16:89777097-89777384(-)$1	1	67	107	17.4646
(..(((.(((((((((((......))))...))))))).)	chr11:65339937-65340249(+)$1	1	205	245	14.5949
).)))(((((((((...(((......)))..)))))))))	chr17:39975818-39976074(+)$1	1	149	189	19.4532
(((((....(((.((((...(.....)...))))))))))	chr5:150503816-150504179(-)$1	1	214	254	12.7047
(((((((.(...((...((((......).)))..))).))	chr7:6461241-6461515(-)$1	1	181	221	15.5782
((..(((((((((.(((((((.....))))))).))))))	chr2:135676182-135676537(+)$1	1	226	266	14.2699
(((.....((((((....((......))....))))))..	chr22:51142255-51142549(+)$1	1	5	45	16.5306
(((.(((.((((..((((((......))))))...)))).	chr9:139904886-139905157(-)$1	1	76	116	14.1865
((((.(((..(((((.(((((.....))..)))...))))	chr16:706139-706431(+)$1	1	164	204	13.1357
..((((.((..(((...(((......))))))..))))))	chr9:35091947-35092238(-)$1	1	220	260	15.8240
(((((((((((..(.(((((......)))))).)))))..	chr15:75651394-75651652(-)$1	1	89	129	14.5703
(.....(((((((..(.(((....))))..)))))))...	chr17:7232436-7232707(-)$1	1	216	256	14.0445
(((((..(.((((((.(.((......)))))))))..)..	chr2:220422011-220422302(-)$1	1	56	96	16.1162
.((((..(((.(((((((((...)))))))))...)))..	chr5:1073585-1073866(-)$1	1	119	159	13.6271
((....(((((((((((.((......)).))))))))).)	chr9:35092384-35092639(-)$1	1	204	244	19.0008
)).(((..((((((((.(((......))))))))))))))	chr17:27443353-27443609(-)$1	1	116	156	14.9137
)((...(((((..(((((((......)).))))).)))))	chr8:21926761-21927040(+)$1	1	175	215	15.1057
))))..(.((((((((((((......)))))))))))).)	chr19:18728987-18729308(+)$1	1	179	219	17.5595
(((((.((((((((((.(((......))).))))))....	chr10:103589510-103589751(-)$1	1	22	62	16.4356
..)))(((((((((...(((......)))..)))))))))	chr17:39975792-39976011(+)$1	1	175	215	18.9703
(((((((((...(((((.((......)).))))).)))))	chr1:1562878-1563156(+)$1	1	97	137	18.2680
((.((((((.(((.((((((......)))))).)))))))	chr8:145689509-145689774(-)$1	1	194	234	13.6777
)(((.((((((..(((..((......))....))))))))	chr13:111357955-111358243(-)$1	1	178	218	16.7174
)..))).(((((((((.(((......))).))))))))).	chr9:131904718-131904968(+)$1	1	109	149	16.9228
((((..(.(.((((..(((......)))..)))).).)..	chr7:766825-767118(-)$1	1	121	161	15.7166
....((.(((((((((..((......)).))))))))).)	chr7:44799651-44799903(+)$1	1	11	51	18.3096
.((.((((((((((((((.........))))))))))).)	chr9:139904814-139905086(-)$1	1	159	199	14.6953
.((((..((..((((((((......)))..))))).))..	chr6:30457862-30458178(+)$1	1	215	255	14.6936
((((((((((((.(((.(((......))).))).))..))	chr2:241512950-241513312(+)$1	1	115	155	16.6762
(((.(((((((.(((...(((....)))...))).)))))	chr21:46876093-46876425(+)$1	1	211	251	15.7210
.(((((..(((.((((((((((....))))))))))....	chr20:60714666-60714934(-)$1	1	82	122	14.1644
(((((((.((((.(((((((......))))))).)))).)	chr3:48454455-48454744(-)$1	1	77	117	15.9608
.)))))(((..(((((.(((......)))...))))))))	chr1:156347823-156348090(+)$1	1	21	61	17.3892
((....(((((((((((.((......)).))))))))).)	chr9:35092272-35092526(-)$1	1	91	131	19.0008
(.(((((.(..(((((..((......)).)))))..).))	chr6:33248311-33248602(-)$1	1	1	41	16.3526
).((((((..(((..(((((......))).)).))).)))	chr16:2578491-2578745(+)$1	1	206	246	14.9568
(..(((((..((((((..(((.....))).)))))).)))	chr6:33405717-33406003(+)$1	1	1	41	12.8149
(((...((.(((((.(((((......))))).)...))))	chr1:36787809-36788065(+)$1	1	164	204	14.1253
(.((((((((((((..(.(((....)))..)..)))))))	chr14:103568727-103569060(+)$1	1	40	80	15.6946
)))).(((..(.(((((.((......)).))))).)...)	chr17:39976055-39976283(+)$1	1	107	147	16.0285
(((((..(((..(((..(((......))).)))..)))..	chr12:57485368-57485657(+)$1	1	8	48	16.7489
))))))(((((((((...((......))..)))))))))(	chrX:153031617-153031875(+)$1	1	87	127	19.5580
.((.((((((((((..((((......)))).)))))))))	chr15:75650873-75651164(-)$1	1	58	98	16.4265

#PSSM
e : 0.22	c : 0.12	d : 0.10	b : 0.08	i : 0.07	[ : 0.07	g : 0.05	= : 0.05	f : 0.05	" : 0.03	$ : 0.03	a : 0.01	2 : 0.01	o : 0.01	F : 0.01	: : 0.01	
e : 0.28	d : 0.10	i : 0.08	c : 0.08	b : 0.07	g : 0.05	f : 0.05	= : 0.05	! : 0.03	$ : 0.03	2 : 0.03	[ : 0.03	] : 0.01	" : 0.01	: : 0.01	F : 0.01	
e : 0.28	d : 0.10	i : 0.08	f : 0.07	= : 0.07	c : 0.07	g : 0.05	# : 0.05	! : 0.05	b : 0.05	$ : 0.03	: : 0.01	[ : 0.01	2 : 0.01	F : 0.01	
e : 0.22	[ : 0.12	c : 0.10	f : 0.08	d : 0.08	= : 0.07	" : 0.05	# : 0.05	$ : 0.05	i : 0.03	! : 0.03	g : 0.03	b : 0.01	F : 0.01	
e : 0.21	c : 0.15	g : 0.08	d : 0.07	= : 0.07	" : 0.05	f : 0.05	i : 0.05	# : 0.05	b : 0.03	! : 0.03	$ : 0.03	[ : 0.03	: : 0.03	a : 0.01	
c : 0.15	e : 0.12	g : 0.08	i : 0.08	! : 0.08	[ : 0.07	f : 0.07	= : 0.07	# : 0.07	" : 0.05	b : 0.03	d : 0.03	$ : 0.03	: : 0.01	
c : 0.15	g : 0.10	b : 0.10	! : 0.10	i : 0.08	e : 0.08	f : 0.07	= : 0.07	[ : 0.07	d : 0.05	a : 0.03	# : 0.01	$ : 0.01	: : 0.01	
c : 0.15	[ : 0.14	g : 0.12	b : 0.12	i : 0.12	= : 0.08	e : 0.05	f : 0.05	d : 0.03	a : 0.03	! : 0.03	# : 0.01	$ : 0.01	
i : 0.17	c : 0.14	g : 0.12	= : 0.10	! : 0.08	f : 0.07	d : 0.07	b : 0.05	a : 0.05	h : 0.03	e : 0.03	[ : 0.03	# : 0.01	
i : 0.17	! : 0.15	g : 0.12	c : 0.10	= : 0.08	d : 0.08	f : 0.07	[ : 0.05	" : 0.05	h : 0.03	e : 0.03	b : 0.01	
i : 0.15	g : 0.12	f : 0.12	! : 0.10	[ : 0.08	c : 0.07	d : 0.07	= : 0.07	" : 0.05	e : 0.05	a : 0.03	h : 0.03	b : 0.01	
i : 0.17	f : 0.10	[ : 0.08	g : 0.08	e : 0.08	d : 0.08	! : 0.08	c : 0.07	= : 0.07	b : 0.05	" : 0.05	h : 0.03	
i : 0.17	c : 0.14	e : 0.12	f : 0.10	! : 0.08	= : 0.08	b : 0.07	g : 0.07	d : 0.05	[ : 0.05	h : 0.03	
i : 0.15	c : 0.14	e : 0.14	f : 0.10	= : 0.08	[ : 0.07	g : 0.07	! : 0.07	d : 0.05	h : 0.03	b : 0.03	a : 0.03	
e : 0.14	c : 0.12	i : 0.12	f : 0.10	[ : 0.08	! : 0.08	" : 0.07	g : 0.05	d : 0.05	= : 0.05	b : 0.03	h : 0.03	a : 0.01	# : 0.01	
" : 0.15	e : 0.15	! : 0.10	i : 0.10	f : 0.08	a : 0.07	b : 0.05	g : 0.05	= : 0.05	h : 0.03	d : 0.03	[ : 0.03	c : 0.03	# : 0.01	
! : 0.19	[ : 0.17	" : 0.15	e : 0.08	i : 0.07	g : 0.05	d : 0.05	c : 0.05	= : 0.05	f : 0.03	a : 0.03	# : 0.01	b : 0.01	
c : 0.36	! : 0.14	[ : 0.12	" : 0.10	g : 0.05	e : 0.05	= : 0.05	d : 0.03	f : 0.03	# : 0.01	i : 0.01	
c : 0.49	b : 0.26	r : 0.03	g : 0.03	f : 0.03	e : 0.03	= : 0.03	o : 0.01	" : 0.01	i : 0.01	d : 0.01	
c : 0.43	b : 0.28	o : 0.05	r : 0.03	g : 0.03	f : 0.03	e : 0.03	= : 0.03	" : 0.01	i : 0.01	d : 0.01	
o : 0.70	c : 0.12	r : 0.03	a : 0.03	n : 0.01	g : 0.01	b : 0.01	m : 0.01	l : 0.01	= : 0.01	
o : 0.75	m : 0.08	n : 0.08	r : 0.03	l : 0.01	= : 0.01	
o : 0.75	m : 0.10	n : 0.08	r : 0.03	l : 0.01	
o : 0.75	m : 0.10	n : 0.08	r : 0.03	i : 0.01	
o : 0.73	m : 0.08	n : 0.08	r : 0.03	d : 0.01	c : 0.01	i : 0.01	
o : 0.70	c : 0.14	n : 0.07	r : 0.03	d : 0.01	i : 0.01	m : 0.01	
c : 0.42	b : 0.28	o : 0.05	r : 0.03	d : 0.03	g : 0.03	f : 0.03	e : 0.03	= : 0.03	a : 0.01	i : 0.01	
c : 0.43	b : 0.28	g : 0.05	= : 0.05	d : 0.03	a : 0.03	f : 0.03	e : 0.03	3 : 0.01	i : 0.01	
c : 0.31	2 : 0.15	] : 0.15	3 : 0.08	g : 0.05	4 : 0.05	= : 0.05	f : 0.03	e : 0.03	a : 0.01	i : 0.01	d : 0.01	
2 : 0.21	] : 0.17	3 : 0.10	e : 0.10	i : 0.08	c : 0.07	g : 0.05	4 : 0.05	f : 0.05	= : 0.05	h : 0.01	d : 0.01	
i : 0.12	e : 0.12	c : 0.10	3 : 0.08	a : 0.08	f : 0.08	g : 0.07	b : 0.05	4 : 0.05	d : 0.05	2 : 0.05	= : 0.05	h : 0.03	] : 0.01	
c : 0.15	i : 0.15	g : 0.10	f : 0.10	e : 0.08	] : 0.07	= : 0.07	b : 0.05	4 : 0.05	d : 0.05	h : 0.03	a : 0.01	3 : 0.01	2 : 0.01	
c : 0.14	i : 0.14	e : 0.12	f : 0.10	g : 0.10	2 : 0.07	= : 0.07	b : 0.05	d : 0.05	] : 0.05	h : 0.03	3 : 0.03	a : 0.01	
e : 0.14	i : 0.14	c : 0.10	f : 0.10	= : 0.08	g : 0.07	] : 0.07	2 : 0.07	3 : 0.07	b : 0.05	d : 0.05	h : 0.03	
i : 0.17	] : 0.14	f : 0.10	= : 0.10	g : 0.07	e : 0.07	b : 0.07	c : 0.07	3 : 0.07	2 : 0.05	h : 0.03	d : 0.03	
i : 0.17	g : 0.12	= : 0.12	f : 0.10	c : 0.08	e : 0.07	b : 0.07	a : 0.05	d : 0.05	2 : 0.05	h : 0.03	3 : 0.03	] : 0.01	
i : 0.17	g : 0.12	= : 0.10	] : 0.08	f : 0.08	e : 0.08	d : 0.08	c : 0.07	h : 0.03	a : 0.03	2 : 0.03	4 : 0.03	b : 0.01	3 : 0.01	
i : 0.17	c : 0.14	g : 0.12	= : 0.10	f : 0.08	d : 0.08	e : 0.07	2 : 0.03	] : 0.03	3 : 0.03	a : 0.03	4 : 0.03	h : 0.01	b : 0.01	
] : 0.17	c : 0.12	i : 0.10	2 : 0.10	g : 0.08	e : 0.08	3 : 0.07	f : 0.07	= : 0.07	4 : 0.05	d : 0.05	
c : 0.17	e : 0.10	g : 0.08	b : 0.08	2 : 0.08	f : 0.07	i : 0.07	= : 0.07	3 : 0.05	4 : 0.05	d : 0.05	a : 0.03	] : 0.03	: : 0.01	

#score	914.1290789769752
#seq	57
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF061DTB_NKRF_CDS_m3_run2.txt

#BEAR
ggggggglllggggggg	chrX:21959250-21959566(+)$1	316	127	144	6.9584
444bb]==========h	chr19:40330989-40331250(-)$1	261	91	108	7.9628
c"""ggggggg[a[a[f	chr16:29998086-29998350(+)$1	264	100	117	6.5747
hhhhhhiiiiiiiii[a	chr17:30264218-30264507(+)$1	289	179	196	7.9400
333=============:	chr17:73823392-73823688(-)$1	296	146	163	9.0134
fff!!===========#	chr1:27022891-27023145(+)$1	254	17	34	9.3004
=======lll=======	chr19:1592433-1592683(-)$1	250	70	87	8.9565
]ccc]===========C	chr17:76201421-76201657(+)$1	236	201	218	8.3943
ggggggg[ggggggg[a	chr9:99212775-99213013(+)$1	238	12	29	7.8451
[==============[b	chr2:231902557-231902803(+)$1	246	61	78	10.1314
c]ccca]iiiiiiiii:	chr3:127872406-127872710(+)$1	304	264	281	7.4060
iiiiiiiiiiiiiiiii	chr5:173043246-173043507(-)$1	261	129	146	9.2111
==============ddd	chr17:75401116-75401355(+)$1	239	50	67	9.0606
ff[bb[==========%	chr19:460626-460867(-)$1	241	127	144	8.0690
ddd[===========[a	chr2:20423828-20424142(-)$1	314	67	84	9.4348
========lll======	chr14:103576655-103576927(+)$1	272	146	163	8.7912
ggggggglllggggggg	chr19:58991523-58991791(-)$1	268	115	132	6.9584
dddccc==========b	chr7:150777704-150777985(-)$1	281	153	170	8.5768
c]dddd]iiiiiiiiia	chr2:219264947-219265181(+)$1	234	121	138	7.4211
ggggggg"""ccc$$$$	chr19:55899432-55899725(+)$1	293	152	169	6.1328
ggggggg!!bb[ccc[d	chr1:1355866-1356128(-)$1	262	58	75	6.4794
dddccc==========b	chr7:150777594-150777900(-)$1	306	68	85	8.5768
ggggggglllggggggg	chr19:49002197-49002498(-)$1	301	21	38	6.9584
==============!!c	chr1:27022945-27023198(+)$1	253	1	18	10.0233
dccc[a[iiiiiiiii%	chr7:5427235-5427450(-)$1	215	91	108	7.4957
c]ccc]==========3	chr15:80215308-80215595(-)$1	287	182	199	9.0379
!!bb[===========[	chr17:25783615-25783884(+)$1	269	22	39	8.9246
eeee]===========:	chr1:28845117-28845400(+)$1	283	126	143	8.3442
2eeeeeiiiiiiiii[d	chr19:5894625-5894856(-)$1	231	57	74	7.4366
ccc[iiiiiiiii!!bb	chr6:31864774-31865112(-)$1	338	185	202	7.9246
[iiiiiiiii!!a!!cc	chr19:2425964-2426258(-)$1	294	7	24	7.8437
=========bb!!eeee	chr10:103603174-103603437(-)$1	263	164	181	6.9836
iiiiii==========d	chr20:32255385-32255655(-)$1	270	203	220	9.9929
d####==========[c	chr4:3768416-3768676(+)$1	260	31	48	8.9075
ggggggglllggggggg	chr1:27023202-27023432(+)$1	230	10	27	6.9584
>===============e	chr10:74452336-74452635(+)$1	299	115	132	9.6831
ggggggg[a[eeeee[d	chr19:14272231-14272572(+)$1	341	128	145	6.1729
!ggggggg!!ccc[a[d	chr11:66626979-66627226(-)$1	247	80	97	6.8411
gggggg]iiiiiiiii2	chr8:145687739-145688007(-)$1	268	89	106	8.4356
eeee[===========[	chr17:46985945-46986208(+)$1	263	80	97	9.1303
ggggggiiiiiiiii""	chr3:49049843-49050145(+)$1	302	91	108	9.0373
gggggg==========:	chr11:639275-639568(+)$1	293	47	64	9.2723
3===============B	chr7:139876604-139876843(-)$1	239	114	131	9.4941
eeeee]==========f	chr3:52567648-52567895(-)$1	247	92	109	8.5101
[ggggggg[ggggggg'	chr1:27022998-27023296(+)$1	298	87	104	6.9831

#otherMatches

#Seq PSSM
GUUGCAGGGACUGCGGC	chrX:21959250-21959566(+)$1	316	127	144	6.9584
AUAGGUGGAGGCUUCCA	chr19:40330989-40331250(-)$1	261	91	108	7.9628
AGGAGGCUGGGACAUGG	chr16:29998086-29998350(+)$1	264	100	117	6.5747
AGCUGUGGAGGGGGUGG	chr17:30264218-30264507(+)$1	289	179	196	7.9400
UGGGUCCUCUCCCCAGG	chr17:73823392-73823688(-)$1	296	146	163	9.0134
CGCCCCCGCCGCCGCCA	chr1:27022891-27023145(+)$1	254	17	34	9.3004
GGAGUGCCCGGCGCUCC	chr19:1592433-1592683(-)$1	250	70	87	8.9565
CCCUGGCUCACCAGGAG	chr17:76201421-76201657(+)$1	236	201	218	8.3943
CCGGGGCCUCGGGCCAC	chr9:99212775-99213013(+)$1	238	12	29	7.8451
GUCGUCGCUGGCCGCCC	chr2:231902557-231902803(+)$1	246	61	78	10.1314
GCGCGGGCCGGGGCGGG	chr3:127872406-127872710(+)$1	304	264	281	7.4060
CCUCUGCCGGGGCAGCG	chr5:173043246-173043507(-)$1	261	129	146	9.2111
CUCGGUGAUGGCUGGUG	chr17:75401116-75401355(+)$1	239	50	67	9.0606
gcugcgccgcgcccugu	chr19:460626-460867(-)$1	241	127	144	8.0690
GGCGCAgcgcggccggc	chr2:20423828-20424142(-)$1	314	67	84	9.4348
GCGGGGGGGGGCCUCCC	chr14:103576655-103576927(+)$1	272	146	163	8.7912
GGGCACUGGCGGUGUCC	chr19:58991523-58991791(-)$1	268	115	132	6.9584
CCCGGCCCCCGGGCCCC	chr7:150777704-150777985(-)$1	281	153	170	8.5768
CCUGGCGCCUUUGGGGC	chr2:219264947-219265181(+)$1	234	121	138	7.4211
GCCUUGCUCUGCUCCCC	chr19:55899432-55899725(+)$1	293	152	169	6.1328
ggggucccagcgcuggg	chr1:1355866-1356128(-)$1	262	58	75	6.4794
CCCGGCCCCCGGGCCCC	chr7:150777594-150777900(-)$1	306	68	85	8.5768
GCCGGGGAGACCCUGGC	chr19:49002197-49002498(-)$1	301	21	38	6.9584
CGCCGCCGCCCUCGGAG	chr1:27022945-27023198(+)$1	253	1	18	10.0233
GGCUGGGGCCUGGGCUG	chr7:5427235-5427450(-)$1	215	91	108	7.4957
UGGUCGGGCGCCUGGCU	chr15:80215308-80215595(-)$1	287	182	199	9.0379
agccucggccgccgcgg	chr17:25783615-25783884(+)$1	269	22	39	8.9246
GGGAGCCCUGCCCGGGA	chr1:28845117-28845400(+)$1	283	126	143	8.3442
UGGGCCGGCUGGAGGGC	chr19:5894625-5894856(-)$1	231	57	74	7.4366
GUGCGGCCCCUCCGGGC	chr6:31864774-31865112(-)$1	338	185	202	7.9246
AGGGGCUGUGUUUAUUG	chr19:2425964-2426258(-)$1	294	7	24	7.8437
GCUCCUACGACCAGCUC	chr10:103603174-103603437(-)$1	263	164	181	6.9836
CUGCCUGCCACGUUCAG	chr20:32255385-32255655(-)$1	270	203	220	9.9929
UGGGGGCCGCCGCGCGG	chr4:3768416-3768676(+)$1	260	31	48	8.9075
GCGGGCCCUAGGCCCGC	chr1:27023202-27023432(+)$1	230	10	27	6.9584
CGGGCGGGUUGGGGAGU	chr10:74452336-74452635(+)$1	299	115	132	9.6831
GCUGCGGGCGAGGCUGU	chr19:14272231-14272572(+)$1	341	128	145	6.1729
UGCUUCAGCAGGAAGUG	chr11:66626979-66627226(-)$1	247	80	97	6.8411
ggcggcggcucugggcg	chr8:145687739-145688007(-)$1	268	89	106	8.4356
gggccgggggcCCGGGG	chr17:46985945-46986208(+)$1	263	80	97	9.1303
GGCUGUGGCACUUGGUA	chr3:49049843-49050145(+)$1	302	91	108	9.0373
CCGGGCCCCCUUCUCCG	chr11:639275-639568(+)$1	293	47	64	9.2723
Agcggcggcggcggugg	chr7:139876604-139876843(-)$1	239	114	131	9.4941
gcggcgggcuggccgag	chr3:52567648-52567895(-)$1	247	92	109	8.5101
GCCGCCGCAGCCGCUGG	chr1:27022998-27023296(+)$1	298	87	104	6.9831

#DB
(((((((...)))))))	chrX:21959250-21959566(+)$1	1	127	144	6.9584
...)).))))))))))(	chr19:40330989-40331250(-)$1	1	91	108	7.9628
(...(((((((.(.(.(	chr16:29998086-29998350(+)$1	1	100	117	6.5747
))))))(((((((((.(	chr17:30264218-30264507(+)$1	1	179	196	7.9400
...))))))))))))).	chr17:73823392-73823688(-)$1	1	146	163	9.0134
(((..(((((((((((.	chr1:27022891-27023145(+)$1	1	17	34	9.3004
(((((((...)))))))	chr19:1592433-1592683(-)$1	1	70	87	8.9565
.))).))))))))))))	chr17:76201421-76201657(+)$1	1	201	218	8.3943
(((((((.(((((((.(	chr9:99212775-99213013(+)$1	1	12	29	7.8451
.((((((((((((((.(	chr2:231902557-231902803(+)$1	1	61	78	10.1314
).)))).))))))))).	chr3:127872406-127872710(+)$1	1	264	281	7.4060
)))))))))((((((((	chr5:173043246-173043507(-)$1	1	129	146	9.2111
))))))))))))))(((	chr17:75401116-75401355(+)$1	1	50	67	9.0606
((.((.((((((((((.	chr19:460626-460867(-)$1	1	127	144	8.0690
(((.(((((((((((.(	chr2:20423828-20424142(-)$1	1	67	84	9.4348
((((((((...))))))	chr14:103576655-103576927(+)$1	1	146	163	8.7912
(((((((...)))))))	chr19:58991523-58991791(-)$1	1	115	132	6.9584
(((((((((((((((((	chr7:150777704-150777985(-)$1	1	153	170	8.5768
).)))).)))))))))(	chr2:219264947-219265181(+)$1	1	121	138	7.4211
(((((((...(((....	chr19:55899432-55899725(+)$1	1	152	169	6.1328
(((((((..((.(((.(	chr1:1355866-1356128(-)$1	1	58	75	6.4794
(((((((((((((((((	chr7:150777594-150777900(-)$1	1	68	85	8.5768
(((((((...)))))))	chr19:49002197-49002498(-)$1	1	21	38	6.9584
((((((((((((((..(	chr1:27022945-27023198(+)$1	1	1	18	10.0233
)(((.(.(((((((((.	chr7:5427235-5427450(-)$1	1	91	108	7.4957
).))).)))))))))).	chr15:80215308-80215595(-)$1	1	182	199	9.0379
..((.(((((((((((.	chr17:25783615-25783884(+)$1	1	22	39	8.9246
)))).))))))))))).	chr1:28845117-28845400(+)$1	1	126	143	8.3442
.)))))(((((((((.(	chr19:5894625-5894856(-)$1	1	57	74	7.4366
(((.(((((((((..((	chr6:31864774-31865112(-)$1	1	185	202	7.9246
.(((((((((..(..((	chr19:2425964-2426258(-)$1	1	7	24	7.8437
(((((((((((..((((	chr10:103603174-103603437(-)$1	1	164	181	6.9836
))))))(((((((((((	chr20:32255385-32255655(-)$1	1	203	220	9.9929
(....((((((((((.(	chr4:3768416-3768676(+)$1	1	31	48	8.9075
(((((((...)))))))	chr1:27023202-27023432(+)$1	1	10	27	6.9584
.)))))))))))))))(	chr10:74452336-74452635(+)$1	1	115	132	9.6831
(((((((.(.(((((.(	chr19:14272231-14272572(+)$1	1	128	145	6.1729
.(((((((..(((.(.(	chr11:66626979-66627226(-)$1	1	80	97	6.8411
)))))).))))))))).	chr8:145687739-145688007(-)$1	1	89	106	8.4356
((((.(((((((((((.	chr17:46985945-46986208(+)$1	1	80	97	9.1303
(((((((((((((((..	chr3:49049843-49050145(+)$1	1	91	108	9.0373
)))))))))))))))).	chr11:639275-639568(+)$1	1	47	64	9.2723
.)))))))))))))))(	chr7:139876604-139876843(-)$1	1	114	131	9.4941
))))).))))))))))(	chr3:52567648-52567895(-)$1	1	92	109	8.5101
.(((((((.(((((((.	chr1:27022998-27023296(+)$1	1	87	104	6.9831

#PSSM
g : 0.24	c : 0.11	= : 0.11	d : 0.11	[ : 0.06	e : 0.06	3 : 0.04	f : 0.04	i : 0.04	! : 0.04	4 : 0.02	h : 0.02	] : 0.02	2 : 0.02	> : 0.02	
g : 0.28	= : 0.17	e : 0.08	c : 0.06	] : 0.06	i : 0.06	d : 0.06	f : 0.04	4 : 0.02	" : 0.02	h : 0.02	3 : 0.02	! : 0.02	# : 0.02	
g : 0.28	= : 0.17	c : 0.11	d : 0.08	e : 0.08	i : 0.06	4 : 0.02	" : 0.02	h : 0.02	3 : 0.02	f : 0.02	[ : 0.02	b : 0.02	# : 0.02	
g : 0.28	= : 0.20	c : 0.13	e : 0.08	b : 0.06	i : 0.06	[ : 0.04	" : 0.02	h : 0.02	! : 0.02	d : 0.02	# : 0.02	
g : 0.31	= : 0.22	c : 0.08	i : 0.08	[ : 0.06	b : 0.04	] : 0.04	e : 0.04	h : 0.02	! : 0.02	d : 0.02	# : 0.02	
= : 0.35	g : 0.31	i : 0.08	] : 0.06	a : 0.04	c : 0.04	h : 0.02	[ : 0.02	d : 0.02	e : 0.02	
= : 0.53	g : 0.24	i : 0.13	] : 0.06	[ : 0.02	
= : 0.51	i : 0.22	l : 0.11	g : 0.06	[ : 0.04	" : 0.02	! : 0.02	
= : 0.48	i : 0.22	l : 0.13	g : 0.04	! : 0.04	" : 0.02	a : 0.02	[ : 0.02	
= : 0.46	i : 0.22	l : 0.13	g : 0.06	b : 0.04	" : 0.02	[ : 0.02	! : 0.02	
= : 0.48	i : 0.20	g : 0.15	c : 0.04	b : 0.04	l : 0.02	! : 0.02	e : 0.02	
= : 0.51	i : 0.20	g : 0.13	[ : 0.04	c : 0.04	! : 0.04	e : 0.02	
= : 0.51	i : 0.20	g : 0.13	c : 0.06	a : 0.04	! : 0.02	e : 0.02	
= : 0.51	i : 0.17	g : 0.13	[ : 0.04	! : 0.04	e : 0.04	$ : 0.02	c : 0.02	
= : 0.46	i : 0.17	g : 0.13	! : 0.06	a : 0.04	e : 0.04	d : 0.02	$ : 0.02	c : 0.02	
= : 0.39	[ : 0.22	g : 0.11	i : 0.11	d : 0.02	$ : 0.02	! : 0.02	b : 0.02	c : 0.02	e : 0.02	" : 0.02	
d : 0.13	g : 0.08	a : 0.08	: : 0.08	b : 0.08	c : 0.06	f : 0.04	= : 0.04	% : 0.04	[ : 0.04	e : 0.04	h : 0.02	# : 0.02	C : 0.02	i : 0.02	$ : 0.02	3 : 0.02	2 : 0.02	" : 0.02	B : 0.02	' : 0.02	

#score	369.58840707157316
#seq	45
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_UTR_m3_run2.txt

#BEAR
eee!!ccc[bb$$$$$ccc^^^^^^^^^^^^^^^^^^^^	chrX:79927754-79928018(-)$1	264	18	57	22.9463
==========%%%%%%cccmmmmccc666666=======	chr3:197611168-197611533(+)$1	365	252	291	21.3797
==========%%%%%%ccclllccc4444==========	chr11:2160137-2160341(-)$1	204	86	125	25.1987
[eeeee[ccc^^^^^^^^^^^^^^^^^^^^^^^ccceee	chr11:2160016-2160223(-)$1	207	4	43	25.5453
ff!!ffffff$$$$$dddd^^^^^^^^^^^^^^^^^^^^	chr20:33298153-33298439(+)$1	286	62	101	21.3650
!eeeee[ccc^^^^^^^^^^^^^^^^^^^ccceeeee44	chr11:2150859-2151078(-)$1	219	13	52	24.5692
iiiiiii[bb$$$$$cccmmmmccc55555bb]iiiiii	chr19:56671814-56672105(+)$1	291	178	217	16.7491
gggggg!!bb%%%%%%cccmmmmccc22bb22ggggggg	chr22:41678154-41678408(-)$1	254	215	254	16.5526
==========%%%%%%ccclllccc4444==========	chr11:2160154-2160393(-)$1	239	138	177	25.1987
==========%%%%%%ccclllccc4444==========	chr11:2160193-2160418(-)$1	225	163	202	25.1987
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc:	chr17:7154815-7155081(-)$1	266	74	113	23.7687
=======[bb%%%%%%cccoooooocccbb=========	chr11:2151086-2151291(-)$1	205	91	130	21.2771
:ggggggg^^^^^^^^^^^^^^^^^^^^^^^ggggggg:	chr5:149781132-149781400(-)$1	268	45	84	24.2332
==========%%%%%%ccclllccc4444==========	chr11:2160067-2160275(-)$1	208	20	59	25.1987
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^hhhhhhhh:	chr12:57824511-57824808(-)$1	297	81	120	20.5528
==========%%%%%%ccclllccc4444==========	chr11:2160091-2160303(-)$1	212	48	87	25.1987
=======[bb%%%%%%cccoooooocccbb=========	chr11:2151091-2151299(-)$1	208	99	138	21.2771
==========%%%%%%ccclllccc4444==========	chr11:2160141-2160354(-)$1	213	99	138	25.1987
==========%%%%%%ccclllccc4444==========	chr11:2160120-2160337(-)$1	217	82	121	25.1987
:bb[ffffff^^^^^^^^^^^^^^^^^^^ffffff]bb:	chr6:32136652-32136946(-)$1	294	225	264	20.6012
==========^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160225-2160431(-)$1	206	28	67	28.8430
==========^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160218-2160422(-)$1	204	19	58	28.8430
==========xxxxxxxxxxxxxxx==============	chr16:18795488-18795770(-)$1	282	170	209	21.7259
==========%%%%%%ccclllccc4444==========	chr11:2160103-2160320(-)$1	217	65	104	25.1987
=======[bb%%%%%%cccoooooocccbb=========	chr11:2151038-2151253(-)$1	215	53	92	21.2771
$iiiiiiiii$$$$$ddddoooooodddd4444iiiiii	chr11:62392536-62392798(-)$1	262	54	93	17.2649
==========^^^^^^^^^^^^^^^^^^^^^^^^^====	chr4:57326134-57326395(+)$1	261	147	186	29.7297
==========%%%%%%ccclllccc4444==========	chr11:2160060-2160263(-)$1	203	8	47	25.1987
:::ggggggg^^^^^^^^^^^^^^^^^^^ggggggg:::	chr22:36885089-36885368(-)$1	279	59	98	19.0312
==========^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160222-2160425(-)$1	203	22	61	28.8430
[eeeee[ccc^^^^^^^^^^^^^^^^^^^^^^^ccceee	chr11:2160031-2160246(-)$1	215	27	66	25.5453
=======[bb%%%%%%cccoooooocccbb=========	chr11:2151079-2151286(-)$1	207	86	125	21.2771
==========^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:2160251-2160487(-)$1	236	84	123	28.8430
==========%%%%%%ccclllccc4444==========	chr11:2160063-2160267(-)$1	204	12	51	25.1987
==========%%%%%%ccclllccc4444==========	chr11:2160057-2160260(-)$1	203	5	44	25.1987
!eeeee[ccc^^^^^^^^^^^^^^^^^^^ccceeeee44	chr11:2150972-2151201(-)$1	229	136	175	24.5692
"""ccc[ccc^^^^^^^^^^^^^^^^^^^^^ccc22ccc	chr20:31611269-31611527(+)$1	258	200	239	25.5630
hhhhhh[ccc^^^^^^^^^^^^^^^^^^^ccc]hhhhhh	chr11:57244379-57244750(+)$1	371	234	273	21.9151
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd:	chr9:139942832-139943106(-)$1	274	191	230	23.0631
""ccceeeee%%%%%%cccooooooccc4444eeeee77	chr14:94844177-94844449(-)$1	272	18	57	16.9966
"bbdddd[bb^^^^^^^^^^^^^^^^^^^bb]dddd]bb	chr3:45721893-45722198(+)$1	305	207	246	22.7682
==========xxxxxxxxxxxxxxx==============	chr16:18795353-18795615(-)$1	262	15	54	21.7259

#otherMatches

#Seq PSSM
AAUAUGGGUAGCACUCAGGuuucuuucuuuuuucuuuuc	chrX:79927754-79928018(-)$1	264	18	57	22.9463
gggugcugggauuacaggcgugagccacugcgcccggcG	chr3:197611168-197611533(+)$1	365	252	291	21.3797
GGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGCCC	chr11:2160137-2160341(-)$1	204	86	125	25.1987
CCCCGGUGCCGCCACCGCCUGUCCCCCUCCCGAGGCCCG	chr11:2160016-2160223(-)$1	207	4	43	25.5453
GGUUGGGUGAUAGCCGUUCCUUCCCCGACACCCUCAAUU	chr20:33298153-33298439(+)$1	286	62	101	21.3650
UCUGGGAGGUUUACCUCGCCCCCACUUGUGCCCCCAGCU	chr11:2150859-2151078(-)$1	219	13	52	24.5692
AGGCCCCCUUGGUGAAGCAGAGGCUGAAGGAAAGGGGUC	chr19:56671814-56672105(+)$1	291	178	217	16.7491
gcugggacugacuacaggcacgugccaccacacccagcu	chr22:41678154-41678408(-)$1	254	215	254	16.5526
GGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGCCC	chr11:2160154-2160393(-)$1	239	138	177	25.1987
GGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGCCC	chr11:2160193-2160418(-)$1	225	163	202	25.1987
ccuccccuucccuuuucccuuccucccuuuucccuagcc	chr17:7154815-7155081(-)$1	266	74	113	23.7687
GGGUCUGAGCCCACAGAGCAGGAGAGCUGCCAGGUCUGC	chr11:2151086-2151291(-)$1	205	91	130	21.2771
UCUCUUCCCUUUCCCCAGCAUCACUCCCCAAGGAAGAGC	chr5:149781132-149781400(-)$1	268	45	84	24.2332
GGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGCCC	chr11:2160067-2160275(-)$1	208	20	59	25.1987
ccccuuuucuuccccucuccccccuccuucccaagcccc	chr12:57824511-57824808(-)$1	297	81	120	20.5528
GGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGCCC	chr11:2160091-2160303(-)$1	212	48	87	25.1987
GGGUCUGAGCCCACAGAGCAGGAGAGCUGCCAGGUCUGC	chr11:2151091-2151299(-)$1	208	99	138	21.2771
GGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGCCC	chr11:2160141-2160354(-)$1	213	99	138	25.1987
GGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGCCC	chr11:2160120-2160337(-)$1	217	82	121	25.1987
UCCUAUGUGGUCUUCUCUACCCCUCUACCCCACAUUGGC	chr6:32136652-32136946(-)$1	294	225	264	20.6012
CCGCCUCCUCUUCAUCUACCUCAACUCCCCCCAUCCCCG	chr11:2160225-2160431(-)$1	206	28	67	28.8430
CCGCCUCCUCUUCAUCUACCUCAACUCCCCCCAUCCCCG	chr11:2160218-2160422(-)$1	204	19	58	28.8430
acucugucucgagaaaaaaGAGAGAgagacaggguuuca	chr16:18795488-18795770(-)$1	282	170	209	21.7259
GGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGCCC	chr11:2160103-2160320(-)$1	217	65	104	25.1987
GGGUCUGAGCCCACAGAGCAGGAGAGCUGCCAGGUCUGC	chr11:2151038-2151253(-)$1	215	53	92	21.2771
AGGAGUGAGGUUGCUAAAGAACAUCCUUUUCCCUCUCAU	chr11:62392536-62392798(-)$1	262	54	93	17.2649
aacccuaguaauucuccuaucucagccucccaaagugcu	chr4:57326134-57326395(+)$1	261	147	186	29.7297
GGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGCCC	chr11:2160060-2160263(-)$1	203	8	47	25.1987
UCCCCAGUUGCACCCCCUGACUCAUCUUCCAGCUGGCUC	chr22:36885089-36885368(-)$1	279	59	98	19.0312
CCGCCUCCUCUUCAUCUACCUCAACUCCCCCCAUCCCCG	chr11:2160222-2160425(-)$1	203	22	61	28.8430
CCCCGGUGCCGCCACCGCCUGUCCCCCUCCCGAGGCCCG	chr11:2160031-2160246(-)$1	215	27	66	25.5453
GGGUCUGAGCCCACAGAGCAGGAGAGCUGCCAGGUCUGC	chr11:2151079-2151286(-)$1	207	86	125	21.2771
CCGCCUCCUCUUCAUCUACCUCAACUCCCCCCAUCCCCG	chr11:2160251-2160487(-)$1	236	84	123	28.8430
GGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGCCC	chr11:2160063-2160267(-)$1	204	12	51	25.1987
GGGCCGCUCCCCUUUCCGCGCUGCGUCCCGGAGCGGCCC	chr11:2160057-2160260(-)$1	203	5	44	25.1987
UCUGGGAGGUUUACCUCGCCCCCACUUGUGCCCCCAGCU	chr11:2150972-2151201(-)$1	229	136	175	24.5692
ACCUGCCCUCUUGCAUUAAACAACUUCUCUUGAGCUGCA	chr20:31611269-31611527(+)$1	258	200	239	25.5630
CCAGUUCUGGCCAUUAACUCUUCCCCAUCCCAAGGCUGG	chr11:57244379-57244750(+)$1	371	234	273	21.9151
ACCACUGUCUUCUCCAUCCUUCCACCCCACCCUCAGCGU	chr9:139942832-139943106(-)$1	274	191	230	23.0631
CCAGCCAUGACCCCAGGCUCCACCAAGCAUCUUCAUGUC	chr14:94844177-94844449(-)$1	272	18	57	16.9966
ccuggcACAAUUUUUUUUUGUACCCUCCUUUAUGCCAAG	chr3:45721893-45722198(+)$1	305	207	246	22.7682
acucugucucgagaaaaaaGAGAGAgagacaggguuuca	chr16:18795353-18795615(-)$1	262	15	54	21.7259

#DB
(((..(((.((.....(((....................	chrX:79927754-79928018(-)$1	1	18	57	22.9463
((((((((((......(((....)))......)))))))	chr3:197611168-197611533(+)$1	1	252	291	21.3797
((((((((((......(((...)))....))))))))))	chr11:2160137-2160341(-)$1	1	86	125	25.1987
.(((((.(((.......................))))))	chr11:2160016-2160223(-)$1	1	4	43	25.5453
((..((((((.....((((....................	chr20:33298153-33298439(+)$1	1	62	101	21.3650
.(((((.(((...................))))))))..	chr11:2150859-2151078(-)$1	1	13	52	24.5692
(((((((.((.....(((....))).....)).))))))	chr19:56671814-56672105(+)$1	1	178	217	16.7491
((((((..((......(((....)))..))..)))))))	chr22:41678154-41678408(-)$1	1	215	254	16.5526
((((((((((......(((...)))....))))))))))	chr11:2160154-2160393(-)$1	1	138	177	25.1987
((((((((((......(((...)))....))))))))))	chr11:2160193-2160418(-)$1	1	163	202	25.1987
...................................))).	chr17:7154815-7155081(-)$1	1	74	113	23.7687
(((((((.((......(((......))))))))))))))	chr11:2151086-2151291(-)$1	1	91	130	21.2771
.(((((((.......................))))))).	chr5:149781132-149781400(-)$1	1	45	84	24.2332
((((((((((......(((...)))....))))))))))	chr11:2160067-2160275(-)$1	1	20	59	25.1987
..............................)))))))).	chr12:57824511-57824808(-)$1	1	81	120	20.5528
((((((((((......(((...)))....))))))))))	chr11:2160091-2160303(-)$1	1	48	87	25.1987
(((((((.((......(((......))))))))))))))	chr11:2151091-2151299(-)$1	1	99	138	21.2771
((((((((((......(((...)))....))))))))))	chr11:2160141-2160354(-)$1	1	99	138	25.1987
((((((((((......(((...)))....))))))))))	chr11:2160120-2160337(-)$1	1	82	121	25.1987
.((.((((((...................)))))).)).	chr6:32136652-32136946(-)$1	1	225	264	20.6012
((((((((((.............................	chr11:2160225-2160431(-)$1	1	28	67	28.8430
((((((((((.............................	chr11:2160218-2160422(-)$1	1	19	58	28.8430
((((((((((...............))))))))))))))	chr16:18795488-18795770(-)$1	1	170	209	21.7259
((((((((((......(((...)))....))))))))))	chr11:2160103-2160320(-)$1	1	65	104	25.1987
(((((((.((......(((......))))))))))))))	chr11:2151038-2151253(-)$1	1	53	92	21.2771
.(((((((((.....((((......))))....))))))	chr11:62392536-62392798(-)$1	1	54	93	17.2649
((((((((((.........................))))	chr4:57326134-57326395(+)$1	1	147	186	29.7297
((((((((((......(((...)))....))))))))))	chr11:2160060-2160263(-)$1	1	8	47	25.1987
...(((((((...................)))))))...	chr22:36885089-36885368(-)$1	1	59	98	19.0312
((((((((((.............................	chr11:2160222-2160425(-)$1	1	22	61	28.8430
.(((((.(((.......................))))))	chr11:2160031-2160246(-)$1	1	27	66	25.5453
(((((((.((......(((......))))))))))))))	chr11:2151079-2151286(-)$1	1	86	125	21.2771
((((((((((.............................	chr11:2160251-2160487(-)$1	1	84	123	28.8430
((((((((((......(((...)))....))))))))))	chr11:2160063-2160267(-)$1	1	12	51	25.1987
((((((((((......(((...)))....))))))))))	chr11:2160057-2160260(-)$1	1	5	44	25.1987
.(((((.(((...................))))))))..	chr11:2150972-2151201(-)$1	1	136	175	24.5692
...(((.(((.....................)))..)))	chr20:31611269-31611527(+)$1	1	200	239	25.5630
((((((.(((...................))).))))))	chr11:57244379-57244750(+)$1	1	234	273	21.9151
..................................)))).	chr9:139942832-139943106(-)$1	1	191	230	23.0631
..((((((((......(((......)))....)))))..	chr14:94844177-94844449(-)$1	1	18	57	16.9966
.((((((.((...................)).)))).))	chr3:45721893-45722198(+)$1	1	207	246	22.7682
((((((((((...............))))))))))))))	chr16:18795353-18795615(-)$1	1	15	54	21.7259

#PSSM
= : 0.54	^ : 0.07	: : 0.07	" : 0.07	[ : 0.04	! : 0.04	e : 0.02	f : 0.02	i : 0.02	g : 0.02	$ : 0.02	h : 0.02	
= : 0.54	e : 0.11	^ : 0.07	i : 0.04	g : 0.04	b : 0.04	" : 0.04	f : 0.02	: : 0.02	h : 0.02	
= : 0.54	e : 0.11	^ : 0.07	i : 0.04	g : 0.04	b : 0.04	! : 0.02	: : 0.02	" : 0.02	h : 0.02	c : 0.02	
= : 0.54	e : 0.09	g : 0.07	^ : 0.07	! : 0.04	i : 0.04	c : 0.04	[ : 0.02	h : 0.02	d : 0.02	
= : 0.54	e : 0.09	g : 0.07	^ : 0.07	f : 0.04	i : 0.04	c : 0.04	! : 0.02	h : 0.02	d : 0.02	
= : 0.54	e : 0.11	g : 0.07	^ : 0.07	c : 0.04	f : 0.04	i : 0.04	h : 0.02	d : 0.02	
= : 0.54	[ : 0.14	^ : 0.07	f : 0.04	i : 0.04	g : 0.04	c : 0.02	! : 0.02	e : 0.02	d : 0.02	
= : 0.45	c : 0.16	[ : 0.14	^ : 0.07	f : 0.04	g : 0.04	! : 0.02	i : 0.02	e : 0.02	
= : 0.45	b : 0.16	c : 0.14	^ : 0.09	f : 0.04	[ : 0.02	i : 0.02	g : 0.02	e : 0.02	
= : 0.45	b : 0.19	c : 0.14	^ : 0.09	f : 0.04	i : 0.02	g : 0.02	e : 0.02	
% : 0.42	^ : 0.42	$ : 0.07	x : 0.04	b : 0.02	
% : 0.42	^ : 0.42	$ : 0.09	x : 0.04	
% : 0.42	^ : 0.42	$ : 0.09	x : 0.04	
% : 0.42	^ : 0.42	$ : 0.09	x : 0.04	
% : 0.42	^ : 0.42	$ : 0.09	x : 0.04	
% : 0.42	^ : 0.42	d : 0.04	x : 0.04	$ : 0.02	c : 0.02	
c : 0.47	^ : 0.42	d : 0.04	x : 0.04	
c : 0.47	^ : 0.42	d : 0.04	x : 0.04	
c : 0.45	^ : 0.42	d : 0.04	x : 0.04	m : 0.02	
^ : 0.47	l : 0.26	o : 0.14	m : 0.07	x : 0.04	
^ : 0.47	l : 0.26	o : 0.14	m : 0.07	x : 0.04	
^ : 0.47	l : 0.26	o : 0.14	m : 0.07	x : 0.04	
^ : 0.47	c : 0.28	o : 0.14	m : 0.04	x : 0.04	
^ : 0.47	c : 0.33	o : 0.14	x : 0.04	
^ : 0.47	c : 0.33	o : 0.14	x : 0.04	
^ : 0.47	4 : 0.26	c : 0.16	= : 0.04	5 : 0.02	d : 0.02	
^ : 0.47	4 : 0.26	c : 0.11	= : 0.04	6 : 0.02	5 : 0.02	2 : 0.02	d : 0.02	
^ : 0.47	4 : 0.26	c : 0.11	= : 0.04	6 : 0.02	5 : 0.02	2 : 0.02	d : 0.02	
^ : 0.47	4 : 0.28	b : 0.11	= : 0.04	6 : 0.02	5 : 0.02	d : 0.02	
^ : 0.33	= : 0.30	b : 0.14	c : 0.07	4 : 0.04	6 : 0.02	5 : 0.02	f : 0.02	g : 0.02	
= : 0.40	^ : 0.30	c : 0.07	b : 0.04	4 : 0.04	6 : 0.02	2 : 0.02	h : 0.02	f : 0.02	g : 0.02	
= : 0.40	^ : 0.26	c : 0.09	g : 0.04	4 : 0.04	6 : 0.02	b : 0.02	2 : 0.02	h : 0.02	f : 0.02	] : 0.02	
= : 0.42	^ : 0.26	e : 0.07	g : 0.07	] : 0.04	h : 0.02	f : 0.02	4 : 0.02	c : 0.02	d : 0.02	
= : 0.42	^ : 0.21	c : 0.07	e : 0.07	g : 0.07	i : 0.04	h : 0.04	f : 0.02	d : 0.02	
= : 0.42	^ : 0.19	e : 0.07	g : 0.07	c : 0.04	i : 0.04	h : 0.04	d : 0.04	f : 0.02	2 : 0.02	
= : 0.45	^ : 0.14	c : 0.07	e : 0.07	g : 0.07	i : 0.04	h : 0.04	d : 0.04	] : 0.02	2 : 0.02	
= : 0.45	^ : 0.14	e : 0.11	i : 0.04	g : 0.04	c : 0.04	h : 0.04	b : 0.02	: : 0.02	d : 0.02	] : 0.02	
= : 0.45	^ : 0.14	e : 0.04	4 : 0.04	i : 0.04	g : 0.04	c : 0.04	h : 0.04	b : 0.04	: : 0.02	d : 0.02	7 : 0.02	
= : 0.45	^ : 0.14	: : 0.14	e : 0.04	4 : 0.04	i : 0.04	g : 0.02	c : 0.02	h : 0.02	7 : 0.02	b : 0.02	

#score	985.8296606436327
#seq	42
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF187VMX_SF3B4_UTR_m2_run1.txt

#BEAR
====[aqqqqqqqqa]====	chr12:120990157-120990408(+)$1	251	54	74	14.9269
[cccbbqqqqqqqqbb]ccc	chr3:184040993-184041322(+)$1	329	270	290	14.4049
"""cccqqqqqqqqccc]dd	chr19:2046581-2046818(-)$1	237	96	116	14.2774
aeeeeeqqqqqqqqeeeee]	chr1:226050410-226050717(-)$1	307	39	59	14.1238
e[ddddqqqqqqqqdddd]e	chr15:57211936-57212205(+)$1	269	32	52	13.2776
ffffffqqqqqqqqffffff	chr21:40578053-40578356(-)$1	303	54	74	15.3155
ffffffqqqqqqqqffffff	chr11:62609020-62609241(-)$1	221	6	26	15.3155
ggggggqqqqqqqqgggggg	chr7:933384-933645(+)$1	261	7	27	15.1692
ccccccqqqqqqqqcccFFF	chr22:19951904-19952173(+)$1	269	246	266	13.6532
ffffffqqqqqqqqffffff	chr17:27050624-27050862(+)$1	238	123	143	15.3155
[eeeeeqqqqqqqqeeeee2	chr19:1106398-1106644(+)$1	246	107	127	14.0585
======qqqqqqqq======	chr2:242694997-242695242(+)$1	245	65	85	14.9871
[eeeeeqqqqqqqqeeeee]	chr22:50686612-50686865(-)$1	253	56	76	14.3460
eee!!aqqqqqqqqa22eee	chr12:58220767-58221027(-)$1	260	133	153	13.9126
d!!cccqqqqqqqqccc]dd	chr16:2147873-2148131(-)$1	258	220	240	14.2654
bb!!bbqqqqqqqqbb]bb]	chr18:9550073-9550346(-)$1	273	56	76	13.2229
!eeeeeqqqqqqqqeeeee=	chr17:26902230-26902488(-)$1	258	41	61	14.2774
fff[bbqqqqqqqqbb]fff	chr10:75006482-75006754(-)$1	272	192	212	14.8418
ff[cccqqqqqqqqccc]ff	chr17:26910529-26910780(-)$1	251	72	92	15.1008
ffffffqqqqqqqqffffff	chr6:31619461-31619712(-)$1	251	71	91	15.3155
ccc[bbqqqqqqqqbb]ccc	chr17:34161476-34161706(+)$1	230	35	55	14.2987
ffffffqqqqqqqqffffff	chr22:22893375-22893669(-)$1	294	175	195	15.3155
ffffffqqqqqqqqffffff	chr1:235490166-235490438(-)$1	272	151	171	15.3155
ffff[aqqqqqqqqa]ffff	chr5:179048224-179048510(-)$1	286	186	206	15.1664
ggggggqqqqqqqqgggggg	chr17:38189594-38189868(-)$1	274	183	203	15.1692
###cccqqqqqqqqccc333	chr2:97269969-97270253(-)$1	284	120	140	14.3836
#cccbbqqqqqqqqbb]ccc	chr3:184040705-184040988(+)$1	283	138	158	14.2493
f!!cccqqqqqqqqccc22f	chr15:74917999-74918307(+)$1	308	206	226	14.4082
ggggbbqqqqqqqqbb22gg	chr11:62609128-62609335(-)$1	207	37	57	14.2912
cc[cccqqqqqqqqccc]cc	chr11:85742552-85742798(-)$1	246	174	194	14.7247
hhh!!aqqqqqqqqa22hhh	chr12:56122316-56122589(-)$1	273	120	140	12.9416
d[ddddqqqqqqqqdddd]d	chr3:142747202-142747456(+)$1	254	85	105	13.1054
deeeeeqqqqqqqqeeeeeF	chr22:19483359-19483655(+)$1	296	209	229	13.6756
eeebbaqqqqqqqqa]bb]e	chr1:224612200-224612514(-)$1	314	134	154	13.3763
ggggggqqqqqqqqgggggg	chrX:151138070-151138363(-)$1	293	174	194	15.1692
ffffffqqqqqqqqffffff	chr3:129182239-129182546(+)$1	307	208	228	15.3155
[ccc[aqqqqqqqqa]ccc2	chr6:33164169-33164425(-)$1	256	40	60	14.4633
ffffffqqqqqqqqffffff	chr14:103597825-103598078(+)$1	253	14	34	15.3155
ggggggqqqqqqqqgggggg	chr12:132199218-132199453(+)$1	235	76	96	15.1692
dd!!bbqqqqqqqqbb22dd	chr22:38161549-38161778(+)$1	229	126	146	13.2952
ggggbbqqqqqqqqbb22gg	chr11:62609116-62609328(-)$1	212	30	50	14.2912
ggggggqqqqqqqqgggggg	chr1:150523975-150524216(+)$1	241	32	52	15.1692
feeeeeqqqqqqqqeeeee:	chr3:119153587-119153881(-)$1	294	183	203	13.1806
ddd[bbqqqqqqqqbbdddd	chr17:26902482-26902729(-)$1	247	22	42	13.2168
[eeeeeqqqqqqqqeeeee]	chr5:134681621-134681882(-)$1	261	129	149	14.3460
"eeeeeqqqqqqqqeeeeee	chr1:167511412-167511687(-)$1	275	230	250	14.1161
ffffffqqqqqqqqffffff	chr12:108929121-108929397(-)$1	276	94	114	15.3155
ggggggqqqqqqqqgggggg	chr12:50397958-50398236(-)$1	278	168	188	15.1692
"ddddaqqqqqqqqa]dddd	chr15:91504099-91504387(+)$1	288	157	177	13.4438
ffffffqqqqqqqqffffff	chr5:38962281-38962548(-)$1	267	199	219	15.3155
""ddddqqqqqqqqdddd]b	chr16:2870785-2871065(+)$1	280	211	231	13.0496
ffffffqqqqqqqqffffff	chr5:180670540-180670788(-)$1	248	227	247	15.3155
ffffffqqqqqqqqffffff	chr6:36569633-36569877(+)$1	244	191	211	15.3155
$$ddddqqqqqqqqdddddd	chr4:1368999-1369264(+)$1	265	53	73	12.5727
ggggggqqqqqqqqgggggg	chr14:58686303-58686591(+)$1	288	76	96	15.1692
iiiiiiqqqqqqqqiiiiii	chr17:66036654-66036920(+)$1	266	6	26	14.6558
ffffffqqqqqqqqffffff	chr5:43121987-43122222(+)$1	235	137	157	15.3155
ggggggqqqqqqqqgggggg	chr17:17716052-17716309(-)$1	257	191	211	15.1692
ffffffqqqqqqqqffffff	chr9:140348829-140349045(-)$1	216	21	41	15.3155
cc[cccqqqqqqqqccc444	chr1:44443506-44443773(+)$1	267	130	150	14.4005
ccc[bbqqqqqqqqbb]ccc	chr5:178043802-178044101(-)$1	299	189	209	14.2987
ffffffqqqqqqqqffffff	chr7:99951373-99951624(+)$1	251	219	239	15.3155

#otherMatches

#Seq PSSM
aGCUGUGUAAAAGGAGGGUU	chr12:120990157-120990408(+)$1	251	54	74	14.9269
GUUAAUGACCGAAGAUAUAA	chr3:184040993-184041322(+)$1	329	270	290	14.4049
CCUGAGUGCCUCUCCUCUCC	chr19:2046581-2046818(-)$1	237	96	116	14.2774
CGCUGGCACAGAAACCAGCA	chr1:226050410-226050717(-)$1	307	39	59	14.1238
UCCUGGAAGUCAUCCCGGCG	chr15:57211936-57212205(+)$1	269	32	52	13.2776
GCAGUGAUAUAAUACAUUGC	chr21:40578053-40578356(-)$1	303	54	74	15.3155
uaucaguuuaauaucugaua	chr11:62609020-62609241(-)$1	221	6	26	15.3155
GUUCACUGUGCUGUGUGAGC	chr7:933384-933645(+)$1	261	7	27	15.1692
UGGGGUGGGGAAGGGCCGCU	chr22:19951904-19952173(+)$1	269	246	266	13.6532
UAGUCAUAAUUAACUGACUG	chr17:27050624-27050862(+)$1	238	123	143	15.3155
UAGCUGCCCUAACCCAGCUU	chr19:1106398-1106644(+)$1	246	107	127	14.0585
GGUCAGAGCCCCUCCUGGUC	chr2:242694997-242695242(+)$1	245	65	85	14.9871
GGCGCCAUGUCAGAGGUGCG	chr22:50686612-50686865(-)$1	253	56	76	14.3460
UGGCUUGGUUUUAGAUCCCA	chr12:58220767-58221027(-)$1	260	133	153	13.9126
GCUGGACAGCUCCUUCCUCA	chr16:2147873-2148131(-)$1	258	220	240	14.2654
AUUUCCUACAAGUUGGUAUG	chr18:9550073-9550346(-)$1	273	56	76	13.2229
AGUCUGUAGGUAAGUGGACA	chr17:26902230-26902488(-)$1	258	41	61	14.2774
CUCAGUGACAGAGAACAGAG	chr10:75006482-75006754(-)$1	272	192	212	14.8418
GUAAUUUGGUCUUUGGUCAU	chr17:26910529-26910780(-)$1	251	72	92	15.1008
UAUUGGGGCAGGGAUUAAUG	chr6:31619461-31619712(-)$1	251	71	91	15.3155
GUUAAUGAUUUUAAAUAAAU	chr17:34161476-34161706(+)$1	230	35	55	14.2987
AUACAUCAGCAUGAGUGUGU	chr22:22893375-22893669(-)$1	294	175	195	15.3155
CCAGGUGCAGCUGAACCUGG	chr1:235490166-235490438(-)$1	272	151	171	15.3155
UUUGUUGAACUUGAAUCAGA	chr5:179048224-179048510(-)$1	286	186	206	15.1664
CUCUCUUGAAACUUGGAGAG	chr17:38189594-38189868(-)$1	274	183	203	15.1692
CUUCCUUUGUCUCCAGGUCC	chr2:97269969-97270253(-)$1	284	120	140	14.3836
UGAGACCUUUUCCUGUCCUC	chr3:184040705-184040988(+)$1	283	138	158	14.2493
CCUGGGCAAGAACACCUUUG	chr15:74917999-74918307(+)$1	308	206	226	14.4082
GCGACCGAAGUAAAGGUauc	chr11:62609128-62609335(-)$1	207	37	57	14.2912
GUGAACAUCCCACAGUUGGC	chr11:85742552-85742798(-)$1	246	174	194	14.7247
CCAGGCUGGGUGUUGGGUGG	chr12:56122316-56122589(-)$1	273	120	140	12.9416
UAAUUAGACCUUUAUAAUAA	chr3:142747202-142747456(+)$1	254	85	105	13.1054
GGAACUCACUAUAAAGUUCU	chr22:19483359-19483655(+)$1	296	209	229	13.6756
GACUGCUGCUUUCUGUCAUG	chr1:224612200-224612514(-)$1	314	134	154	13.3763
UGUUGAGAUCUCCGUCAACA	chrX:151138070-151138363(-)$1	293	174	194	15.1692
GCAGCAAGAUCAUCUGCUGC	chr3:129182239-129182546(+)$1	307	208	228	15.3155
AGCGGUACAGGAGGAGCGUC	chr6:33164169-33164425(-)$1	256	40	60	14.4633
AUGGGAGGACUUGAUCCCAU	chr14:103597825-103598078(+)$1	253	14	34	15.3155
ACUUUAGAAAUAUAUAAAGU	chr12:132199218-132199453(+)$1	235	76	96	15.1692
GGAGGCAUGUGAGCGCAGCC	chr22:38161549-38161778(+)$1	229	126	146	13.2952
GCGACCGAAGUAAAGGUauc	chr11:62609116-62609328(-)$1	212	30	50	14.2912
GUGGAGCCUUCCUCCUCUAC	chr1:150523975-150524216(+)$1	241	32	52	15.1692
GUGCUGGUGCGGCACAGCAG	chr3:119153587-119153881(-)$1	294	183	203	13.1806
UGGUGCCACUUGAUGCCCAG	chr17:26902482-26902729(-)$1	247	22	42	13.2168
GUCUAGGAAACACGCUGGAG	chr5:134681621-134681882(-)$1	261	129	149	14.3460
CUCUGGAAAGCGUCCCAGAA	chr1:167511412-167511687(-)$1	275	230	250	14.1161
AUGAUGGGUGUCGACGUCAU	chr12:108929121-108929397(-)$1	276	94	114	15.3155
UCUGGUUCCAUUUUAUCAGA	chr12:50397958-50398236(-)$1	278	168	188	15.1692
ACAGGGGAGCUCUACACCUG	chr15:91504099-91504387(+)$1	288	157	177	13.4438
UAAAAUAUGUAAUAAUUUUA	chr5:38962281-38962548(-)$1	267	199	219	15.3155
AUCAUAAACAACUCUAUGUG	chr16:2870785-2871065(+)$1	280	211	231	13.0496
GCCCCAUUGUGAAUUGGGGC	chr5:180670540-180670788(-)$1	248	227	247	15.3155
ACAGAAAAUUCAAGUUUUGU	chr6:36569633-36569877(+)$1	244	191	211	15.3155
cacgcuaacgcauAGGCGCG	chr4:1368999-1369264(+)$1	265	53	73	12.5727
UUUUAUAAUUCUAAAUGAAA	chr14:58686303-58686591(+)$1	288	76	96	15.1692
AAAUGUAGGGCUAAAUAUUU	chr17:66036654-66036920(+)$1	266	6	26	14.6558
UGCUCUUCUUUUGUAGAGCA	chr5:43121987-43122222(+)$1	235	137	157	15.3155
GAGGCCUUGCUGCUGGCCUC	chr17:17716052-17716309(-)$1	257	191	211	15.1692
AGCCAGGGAGAGCACUGGCU	chr9:140348829-140349045(-)$1	216	21	41	15.3155
UGUUCUUUUUUUGCAGACCU	chr1:44443506-44443773(+)$1	267	130	150	14.4005
CAAAGUUGUAGAGUGCAUUG	chr5:178043802-178044101(-)$1	299	189	209	14.2987
GAGAUUGGGGAGGAAGUCUC	chr7:99951373-99951624(+)$1	251	219	239	15.3155

#DB
((((.(........).))))	chr12:120990157-120990408(+)$1	1	54	74	14.9269
.(((((........)).)))	chr3:184040993-184041322(+)$1	1	270	290	14.4049
...(((........))).))	chr19:2046581-2046818(-)$1	1	96	116	14.2774
((((((........))))).	chr1:226050410-226050717(-)$1	1	39	59	14.1238
(.((((........)))).)	chr15:57211936-57212205(+)$1	1	32	52	13.2776
((((((........))))))	chr21:40578053-40578356(-)$1	1	54	74	15.3155
((((((........))))))	chr11:62609020-62609241(-)$1	1	6	26	15.3155
((((((........))))))	chr7:933384-933645(+)$1	1	7	27	15.1692
)))(((........))))))	chr22:19951904-19952173(+)$1	1	246	266	13.6532
((((((........))))))	chr17:27050624-27050862(+)$1	1	123	143	15.3155
.(((((........))))).	chr19:1106398-1106644(+)$1	1	107	127	14.0585
((((((........))))))	chr2:242694997-242695242(+)$1	1	65	85	14.9871
.(((((........))))).	chr22:50686612-50686865(-)$1	1	56	76	14.3460
(((..(........)..)))	chr12:58220767-58221027(-)$1	1	133	153	13.9126
(..(((........))).))	chr16:2147873-2148131(-)$1	1	220	240	14.2654
((..((........)).)).	chr18:9550073-9550346(-)$1	1	56	76	13.2229
.(((((........))))))	chr17:26902230-26902488(-)$1	1	41	61	14.2774
(((.((........)).)))	chr10:75006482-75006754(-)$1	1	192	212	14.8418
((.(((........))).))	chr17:26910529-26910780(-)$1	1	72	92	15.1008
((((((........))))))	chr6:31619461-31619712(-)$1	1	71	91	15.3155
(((.((........)).)))	chr17:34161476-34161706(+)$1	1	35	55	14.2987
((((((........))))))	chr22:22893375-22893669(-)$1	1	175	195	15.3155
((((((........))))))	chr1:235490166-235490438(-)$1	1	151	171	15.3155
((((.(........).))))	chr5:179048224-179048510(-)$1	1	186	206	15.1664
((((((........))))))	chr17:38189594-38189868(-)$1	1	183	203	15.1692
...(((........)))...	chr2:97269969-97270253(-)$1	1	120	140	14.3836
.(((((........)).)))	chr3:184040705-184040988(+)$1	1	138	158	14.2493
(..(((........)))..)	chr15:74917999-74918307(+)$1	1	206	226	14.4082
((((((........))..))	chr11:62609128-62609335(-)$1	1	37	57	14.2912
((.(((........))).))	chr11:85742552-85742798(-)$1	1	174	194	14.7247
(((..(........)..)))	chr12:56122316-56122589(-)$1	1	120	140	12.9416
(.((((........)))).)	chr3:142747202-142747456(+)$1	1	85	105	13.1054
)(((((........))))))	chr22:19483359-19483655(+)$1	1	209	229	13.6756
((((((........).)).)	chr1:224612200-224612514(-)$1	1	134	154	13.3763
((((((........))))))	chrX:151138070-151138363(-)$1	1	174	194	15.1692
((((((........))))))	chr3:129182239-129182546(+)$1	1	208	228	15.3155
.(((.(........).))).	chr6:33164169-33164425(-)$1	1	40	60	14.4633
((((((........))))))	chr14:103597825-103598078(+)$1	1	14	34	15.3155
((((((........))))))	chr12:132199218-132199453(+)$1	1	76	96	15.1692
((..((........))..))	chr22:38161549-38161778(+)$1	1	126	146	13.2952
((((((........))..))	chr11:62609116-62609328(-)$1	1	30	50	14.2912
((((((........))))))	chr1:150523975-150524216(+)$1	1	32	52	15.1692
)(((((........))))).	chr3:119153587-119153881(-)$1	1	183	203	13.1806
(((.((........))))))	chr17:26902482-26902729(-)$1	1	22	42	13.2168
.(((((........))))).	chr5:134681621-134681882(-)$1	1	129	149	14.3460
.(((((........))))))	chr1:167511412-167511687(-)$1	1	230	250	14.1161
((((((........))))))	chr12:108929121-108929397(-)$1	1	94	114	15.3155
((((((........))))))	chr12:50397958-50398236(-)$1	1	168	188	15.1692
.(((((........).))))	chr15:91504099-91504387(+)$1	1	157	177	13.4438
((((((........))))))	chr5:38962281-38962548(-)$1	1	199	219	15.3155
..((((........)))).)	chr16:2870785-2871065(+)$1	1	211	231	13.0496
((((((........))))))	chr5:180670540-180670788(-)$1	1	227	247	15.3155
((((((........))))))	chr6:36569633-36569877(+)$1	1	191	211	15.3155
..((((........))))))	chr4:1368999-1369264(+)$1	1	53	73	12.5727
((((((........))))))	chr14:58686303-58686591(+)$1	1	76	96	15.1692
((((((........))))))	chr17:66036654-66036920(+)$1	1	6	26	14.6558
((((((........))))))	chr5:43121987-43122222(+)$1	1	137	157	15.3155
((((((........))))))	chr17:17716052-17716309(-)$1	1	191	211	15.1692
((((((........))))))	chr9:140348829-140349045(-)$1	1	21	41	15.3155
((.(((........)))...	chr1:44443506-44443773(+)$1	1	130	150	14.4005
(((.((........)).)))	chr5:178043802-178044101(-)$1	1	189	209	14.2987
((((((........))))))	chr7:99951373-99951624(+)$1	1	219	239	15.3155

#PSSM
f : 0.32	g : 0.16	[ : 0.08	c : 0.08	d : 0.08	" : 0.06	e : 0.04	= : 0.03	# : 0.03	a : 0.01	b : 0.01	! : 0.01	h : 0.01	$ : 0.01	i : 0.01	
f : 0.29	e : 0.16	g : 0.16	c : 0.12	d : 0.04	= : 0.03	" : 0.03	[ : 0.03	! : 0.03	b : 0.01	# : 0.01	h : 0.01	$ : 0.01	i : 0.01	
f : 0.27	e : 0.16	g : 0.16	c : 0.09	d : 0.09	! : 0.06	[ : 0.04	= : 0.03	" : 0.01	# : 0.01	h : 0.01	i : 0.01	
f : 0.25	c : 0.17	g : 0.16	e : 0.12	d : 0.08	! : 0.06	[ : 0.06	= : 0.03	b : 0.01	i : 0.01	
f : 0.24	b : 0.17	c : 0.12	e : 0.12	g : 0.12	d : 0.08	[ : 0.04	! : 0.03	= : 0.01	i : 0.01	
f : 0.24	b : 0.16	c : 0.12	e : 0.12	g : 0.12	a : 0.11	d : 0.06	= : 0.01	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
f : 0.24	b : 0.16	c : 0.12	e : 0.12	g : 0.12	a : 0.11	d : 0.06	= : 0.01	i : 0.01	
f : 0.24	b : 0.16	c : 0.12	e : 0.12	g : 0.12	] : 0.08	d : 0.06	2 : 0.03	= : 0.01	i : 0.01	
f : 0.25	c : 0.14	e : 0.12	g : 0.12	] : 0.09	d : 0.09	2 : 0.08	= : 0.03	b : 0.01	i : 0.01	
f : 0.27	e : 0.14	g : 0.12	d : 0.09	c : 0.08	] : 0.06	2 : 0.06	= : 0.03	b : 0.03	F : 0.01	3 : 0.01	h : 0.01	i : 0.01	4 : 0.01	
f : 0.29	g : 0.16	e : 0.14	c : 0.09	d : 0.09	] : 0.06	= : 0.03	F : 0.01	b : 0.01	3 : 0.01	2 : 0.01	h : 0.01	i : 0.01	4 : 0.01	
f : 0.30	g : 0.16	d : 0.11	c : 0.08	] : 0.06	e : 0.06	= : 0.04	F : 0.03	2 : 0.03	3 : 0.01	h : 0.01	: : 0.01	b : 0.01	i : 0.01	4 : 0.01	

#score	898.7168740252075
#seq	62
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_transcript_m2_run1.txt

#BEAR
##fffffftttttttttttffffff	chr1:117634301-117634552(+)$1	251	41	66	22.8306
eee"""ccctttttttttttccc66	chr19:18420902-18421187(-)$1	285	156	181	21.1799
cccc[ccctttttttttttccc]cc	chr7:6622961-6623173(+)$1	212	105	130	23.3872
hhhhhhhhvvvvvvvvvvvvvhhhh	chr6:160479056-160479317(+)$1	261	22	47	21.0718
[ffffffvvvvvvvvvvvvvfffff	chr16:16215930-16216148(+)$1	218	186	211	23.4725
ccfffffftttttttttttffffff	chr3:160120555-160120794(+)$1	239	124	149	22.8518
d!!bb[bbuuuuuuuuuuuubbbb2	chr7:127344765-127344989(+)$1	224	104	129	21.9337
eee[bbwwwwwwwwwwwwwwbb]ee	chr3:47888640-47888875(+)$1	235	96	121	21.1020
ffffdddduuuuuuuuuuuudddd:	chr19:8520404-8520623(+)$1	219	32	57	21.4558
iii!!ccctttttttttttccc22i	chr16:4393026-4393307(-)$1	281	179	204	22.9749
Gddddccctttttttttttccc]dd	chr19:44280588-44280792(-)$1	204	103	128	22.1221
:gggggggtttttttttttgggggg	chr7:29924106-29924355(+)$1	249	138	163	22.2301
hhhhhhhhuuuuuuuuuuuuhhhhh	chr17:25930721-25931076(+)$1	355	114	139	21.3274
ffffffyyyyyyyyyyyyyyyyfff	chr22:19381724-19381963(-)$1	239	132	157	21.2190
fffff[bbyyyyyyyyyyyyyyyyb	chr11:9445323-9445568(+)$1	245	73	98	19.8281
[gggggggtttttttttttgggggg	chr6:29578552-29578801(-)$1	249	144	169	23.1174
ddddddddvvvvvvvvvvvvvdddd	chr5:176868223-176868488(+)$1	265	101	126	21.4865
b[fffffftttttttttttffffff	chr12:57882953-57883204(+)$1	251	91	116	22.7701
ee[cccwwwwwwwwwwwwwwccc]e	chr19:40876044-40876296(+)$1	252	10	35	21.7596
ccceeeeevvvvvvvvvvvvveeee	chr6:168265325-168265584(+)$1	259	198	223	22.5817
[gggggggtttttttttttgggggg	chr12:57994112-57994407(+)$1	295	24	49	23.1174
:ccc[ccctttttttttttccc]cc	chr1:85724849-85725092(-)$1	243	201	226	22.6221
b[eeeeevvvvvvvvvvvvveeeee	chr17:57762482-57762738(+)$1	256	173	198	22.6880
bba!!cccwwwwwwwwwwwwwwccc	chr7:120907261-120907498(+)$1	237	73	98	21.3182
:::eeeeeuuuuuuuuuuuueeeee	chr4:119672971-119673251(-)$1	280	228	253	20.0423
ccfffffftttttttttttffffff	chr6:17781238-17781507(-)$1	269	73	98	22.8518
""eeeeebbtttttttttttbb]ee	chr1:32646692-32646977(+)$1	285	125	150	22.0289
ebb####avvvvvvvvvvvvva444	chr19:2757539-2757790(-)$1	251	156	181	22.0842
ccc[a!!bbtttttttttttbb]a]	chr15:75197337-75197588(-)$1	251	145	170	22.3973
!ffffffvvvvvvvvvvvvvfffff	chr1:113236505-113236778(+)$1	273	195	220	23.4719
hhhh!!bbuuuuuuuuuuuubb]hh	chr1:182356054-182356322(-)$1	268	87	112	22.6281
:gggggggtttttttttttgggggg	chr3:10086680-10086892(+)$1	212	89	114	22.2301
[ffffffvvvvvvvvvvvvvfffff	chr9:114911408-114911626(-)$1	218	90	115	23.4725
c[ffffffuuuuuuuuuuuufffff	chr8:86131468-86131722(-)$1	254	26	51	23.7161
"""ddddvvvvvvvvvvvvvdddd]	chrX:153608953-153609228(+)$1	275	227	252	22.2793
hhhhhhhhuuuuuuuuuuuuhhhhh	chr16:2807481-2807736(+)$1	255	60	85	21.3274
gggggggwwwwwwwwwwwwwwgggg	chr6:91262992-91263287(-)$1	295	255	280	22.3862
""dddd[auuuuuuuuuuuua]ddd	chr6:31124726-31124990(-)$1	264	148	173	22.9568
fffff[bbuuuuuuuuuuuubb]ff	chr15:48624503-48624740(+)$1	237	200	225	23.5405
ccc[a[bbvvvvvvvvvvvvvbba]	chr7:44053198-44053462(-)$1	264	182	207	22.7764
:ddddyyyyyyyyyyyyyyyydddd	chr1:15953211-15953436(+)$1	225	43	68	19.3775
iiiiiiiiitttttttttttiiiii	chr7:6681507-6681755(+)$1	248	59	84	22.2392
Cddddyyyyyyyyyyyyyyyydddd	chr10:5978448-5978700(+)$1	252	109	134	19.2053
:eeeeewwwwwwwwwwwwwweeeee	chr3:13407302-13407533(-)$1	231	162	187	20.6095
#a[ddddvvvvvvvvvvvvvdddda	chr12:122622757-122623089(+)$1	332	273	298	22.2767
deeeeewwwwwwwwwwwwwweeeee	chr1:111433991-111434235(+)$1	244	63	88	21.1871
[ffffffvvvvvvvvvvvvvfffff	chr7:86817519-86817794(+)$1	275	26	51	23.4725
!!fffffftttttttttttffffff	chr21:33719116-33719364(-)$1	248	195	220	23.0353
[bb!!cccuuuuuuuuuuuuccc22	chr14:24034157-24034435(-)$1	278	195	220	23.2136
ffff!!bbuuuuuuuuuuuubb333	chr1:28862440-28862680(+)$1	240	132	157	23.4096
eeeeecccuuuuuuuuuuuuccc]e	chr15:98508796-98509073(+)$1	277	138	163	23.5580
=========ttttttttttt=====	chr1:65338861-65339153(-)$1	292	219	244	22.5415
ffffffyyyyyyyyyyyyyyyyfff	chr1:153909821-153910055(-)$1	234	170	195	21.2190

#otherMatches

#Seq PSSM
AAACAUGGUUAAAGUAGCCCCAUGU	chr1:117634301-117634552(+)$1	251	41	66	22.8306
GCUGCAGGUGAAGAACCCCAACCAG	chr19:18420902-18421187(-)$1	285	156	181	21.1799
GUGUGGCUCUCGUGACUCCAGCGGC	chr7:6622961-6623173(+)$1	212	105	130	23.3872
AGUGGAUUUGUGUUUAAUCUUAAUC	chr6:160479056-160479317(+)$1	261	22	47	21.0718
AGCUGGGUAUAAAGCCAAACCCCGG	chr16:16215930-16216148(+)$1	218	186	211	23.4725
CAAGUUCAAGUAAGGAAAAUGGACU	chr3:160120555-160120794(+)$1	239	124	149	22.8518
CUCUCAUGUACCUUGUUUUUCAGAA	chr7:127344765-127344989(+)$1	224	104	129	21.9337
CUGUGGCCUCUCUUCCCCCACCCCA	chr3:47888640-47888875(+)$1	235	96	121	21.1020
AAAGACCUGGUUAAAGAAAAAGGUA	chr19:8520404-8520623(+)$1	219	32	57	21.4558
GCCUGGCGGUUCUGAAGUGUGCGUG	chr16:4393026-4393307(-)$1	281	179	204	22.9749
GGGCAGGCCCCGCCCCUAAGCCUUG	chr19:44280588-44280792(-)$1	204	103	128	22.1221
AGUGCGAUAAAAUCUCGUCGUUGCA	chr7:29924106-29924355(+)$1	249	138	163	22.2301
GUGUUUGGUUUUUGUUUCCUCCAGA	chr17:25930721-25931076(+)$1	355	114	139	21.3274
CCAAGAUUCAGCAAAUAUUAAUUCU	chr22:19381724-19381963(-)$1	239	132	157	21.2190
CUUACGAAUAUAUACGCAUGAAGUU	chr11:9445323-9445568(+)$1	245	73	98	19.8281
GUCAAGGGAAAAAGUCAUGCCUUUG	chr6:29578552-29578801(-)$1	249	144	169	23.1174
GGCAAGAUGUGGGAGAAAGAAGUCU	chr5:176868223-176868488(+)$1	265	101	126	21.4865
GGCAGAUAUUUUUUUUUGUUAUCUG	chr12:57882953-57883204(+)$1	251	91	116	22.7701
CAUGGCGUCCUGCAUACCAAGUUCU	chr19:40876044-40876296(+)$1	252	10	35	21.7596
UCUCCAUCUUUCUUCUCUUUUGGUG	chr6:168265325-168265584(+)$1	259	198	223	22.5817
GACUUUCUCAACAAGAACCAGAAAG	chr12:57994112-57994407(+)$1	295	24	49	23.1174
AACCUGGCCCCCUCUCCCCGCCUGG	chr1:85724849-85725092(-)$1	243	201	226	22.6221
CUAUAAAUAAAAGUAUUGGUUUUGU	chr17:57762482-57762738(+)$1	256	173	198	22.6880
uggaguacauuucuuaacacaggua	chr7:120907261-120907498(+)$1	237	73	98	21.3182
AAACUUCCACUCAGAUCUCAGGAGG	chr4:119672971-119673251(-)$1	280	228	253	20.0423
CCCAUCAUAAAGCACAGUGAUGAUG	chr6:17781238-17781507(-)$1	269	73	98	22.8518
UACCCCUCAUCCUCUCCUGCUGUAG	chr1:32646692-32646977(+)$1	285	125	150	22.0289
GGCGGAAGGGAAGGAGGAGAGCGAA	chr19:2757539-2757790(-)$1	251	156	181	22.0842
GAAGAUCGCCUGAUGCCUUUGCUUG	chr15:75197337-75197588(-)$1	251	145	170	22.3973
UGUCCUCGGAGACACACCAGGAGGA	chr1:113236505-113236778(+)$1	273	195	220	23.4719
CCUCAAUCUGUGAAUGCUGUGAAGG	chr1:182356054-182356322(-)$1	268	87	112	22.6281
cuguuuuuuuuuuuuuccuggaagc	chr3:10086680-10086892(+)$1	212	89	114	22.2301
ACCUUUUGUACAGGUACUCAAGAAG	chr9:114911408-114911626(-)$1	218	90	115	23.4725
UGGAAUGAUUUUAGAGUACUUCAUU	chr8:86131468-86131722(-)$1	254	26	51	23.7161
CAGGGACGGGCUGGUUCUGGGUCCA	chrX:153608953-153609228(+)$1	275	227	252	22.2793
CCCUGGGGGCAAGGAGGAGACCCCA	chr16:2807481-2807736(+)$1	255	60	85	21.3274
GACUCUGCCCUGUCCCUGCCCCAGA	chr6:91262992-91263287(-)$1	295	255	280	22.3862
AAUCUAGAGCCUUCAAAUAAUGUGG	chr6:31124726-31124990(-)$1	264	148	173	22.9568
AAAUAGGAUUUCUGCCUUUUUCGUG	chr15:48624503-48624740(+)$1	237	200	225	23.5405
agacgugccugcuuccccuucgccu	chr7:44053198-44053462(-)$1	264	182	207	22.7764
AGGAGAAUGCAGACCCUCGACCUCC	chr1:15953211-15953436(+)$1	225	43	68	19.3775
GCCUGGUUCAUGUGUGUUGAGGACC	chr7:6681507-6681755(+)$1	248	59	84	22.2392
UGCUGUCUGUGGAACUUAAUUCAGC	chr10:5978448-5978700(+)$1	252	109	134	19.2053
CGAAUUUGCAUGAUAAACCCGAUUC	chr3:13407302-13407533(-)$1	231	162	187	20.6095
AGAGGCCAGAUGCAGGAGGAGGCCC	chr12:122622757-122623089(+)$1	332	273	298	22.2767
CUGAAGUAUGUCCUGUUUUUCUUCA	chr1:111433991-111434235(+)$1	244	63	88	21.1871
UGGAAGAUAAUACAGCCAUCUCUUC	chr7:86817519-86817794(+)$1	275	26	51	23.4725
UUCUGGGAUGUGGGUUAGUUUCCAG	chr21:33719116-33719364(-)$1	248	195	220	23.0353
uggccguguaauugccucuccaucu	chr14:24034157-24034435(-)$1	278	195	220	23.2136
Uggccugcguuccuguccuggcucu	chr1:28862440-28862680(+)$1	240	132	157	23.4096
GCAGUAUGUCCAUUCAAGUUUAUCA	chr15:98508796-98509073(+)$1	277	138	163	23.5580
GGUAAGUUCUUGCCACACCUGGACU	chr1:65338861-65339153(-)$1	292	219	244	22.5415
auggguauaacaauaauacuuaacc	chr1:153909821-153910055(-)$1	234	170	195	21.2190

#DB
..((((((...........))))))	chr1:117634301-117634552(+)$1	1	41	66	22.8306
(((...(((...........)))..	chr19:18420902-18421187(-)$1	1	156	181	21.1799
((((.(((...........))).))	chr7:6622961-6623173(+)$1	1	105	130	23.3872
((((((((.............))))	chr6:160479056-160479317(+)$1	1	22	47	21.0718
.((((((.............)))))	chr16:16215930-16216148(+)$1	1	186	211	23.4725
((((((((...........))))))	chr3:160120555-160120794(+)$1	1	124	149	22.8518
(..((.((............)))).	chr7:127344765-127344989(+)$1	1	104	129	21.9337
(((.((..............)).))	chr3:47888640-47888875(+)$1	1	96	121	21.1020
))))((((............)))).	chr19:8520404-8520623(+)$1	1	32	57	21.4558
(((..(((...........)))..)	chr16:4393026-4393307(-)$1	1	179	204	22.9749
)(((((((...........))).))	chr19:44280588-44280792(-)$1	1	103	128	22.1221
.(((((((...........))))))	chr7:29924106-29924355(+)$1	1	138	163	22.2301
((((((((............)))))	chr17:25930721-25931076(+)$1	1	114	139	21.3274
((((((................)))	chr22:19381724-19381963(-)$1	1	132	157	21.2190
(((((.((................)	chr11:9445323-9445568(+)$1	1	73	98	19.8281
.(((((((...........))))))	chr6:29578552-29578801(-)$1	1	144	169	23.1174
((((((((.............))))	chr5:176868223-176868488(+)$1	1	101	126	21.4865
(.((((((...........))))))	chr12:57882953-57883204(+)$1	1	91	116	22.7701
((.(((..............))).)	chr19:40876044-40876296(+)$1	1	10	35	21.7596
((((((((.............))))	chr6:168265325-168265584(+)$1	1	198	223	22.5817
.(((((((...........))))))	chr12:57994112-57994407(+)$1	1	24	49	23.1174
.(((.(((...........))).))	chr1:85724849-85725092(-)$1	1	201	226	22.6221
(.(((((.............)))))	chr17:57762482-57762738(+)$1	1	173	198	22.6880
(((..(((..............)))	chr7:120907261-120907498(+)$1	1	73	98	21.3182
...(((((............)))))	chr4:119672971-119673251(-)$1	1	228	253	20.0423
((((((((...........))))))	chr6:17781238-17781507(-)$1	1	73	98	22.8518
..(((((((...........)).))	chr1:32646692-32646977(+)$1	1	125	150	22.0289
(((....(.............)...	chr19:2757539-2757790(-)$1	1	156	181	22.0842
(((.(..((...........)).).	chr15:75197337-75197588(-)$1	1	145	170	22.3973
.((((((.............)))))	chr1:113236505-113236778(+)$1	1	195	220	23.4719
((((..((............)).))	chr1:182356054-182356322(-)$1	1	87	112	22.6281
.(((((((...........))))))	chr3:10086680-10086892(+)$1	1	89	114	22.2301
.((((((.............)))))	chr9:114911408-114911626(-)$1	1	90	115	23.4725
(.((((((............)))))	chr8:86131468-86131722(-)$1	1	26	51	23.7161
...((((.............)))).	chrX:153608953-153609228(+)$1	1	227	252	22.2793
((((((((............)))))	chr16:2807481-2807736(+)$1	1	60	85	21.3274
(((((((..............))))	chr6:91262992-91263287(-)$1	1	255	280	22.3862
..((((.(............).)))	chr6:31124726-31124990(-)$1	1	148	173	22.9568
(((((.((............)).))	chr15:48624503-48624740(+)$1	1	200	225	23.5405
(((.(.((.............))).	chr7:44053198-44053462(-)$1	1	182	207	22.7764
.((((................))))	chr1:15953211-15953436(+)$1	1	43	68	19.3775
(((((((((...........)))))	chr7:6681507-6681755(+)$1	1	59	84	22.2392
(((((................))))	chr10:5978448-5978700(+)$1	1	109	134	19.2053
.(((((..............)))))	chr3:13407302-13407533(-)$1	1	162	187	20.6095
.(.((((.............)))))	chr12:122622757-122623089(+)$1	1	273	298	22.2767
)(((((..............)))))	chr1:111433991-111434235(+)$1	1	63	88	21.1871
.((((((.............)))))	chr7:86817519-86817794(+)$1	1	26	51	23.4725
..((((((...........))))))	chr21:33719116-33719364(-)$1	1	195	220	23.0353
.((..(((............)))..	chr14:24034157-24034435(-)$1	1	195	220	23.2136
((((..((............))...	chr1:28862440-28862680(+)$1	1	132	157	23.4096
((((((((............))).)	chr15:98508796-98509073(+)$1	1	138	163	23.5580
(((((((((...........)))))	chr1:65338861-65339153(-)$1	1	219	244	22.5415
((((((................)))	chr1:153909821-153910055(-)$1	1	170	195	21.2190

#PSSM
c : 0.13	[ : 0.11	f : 0.11	: : 0.11	e : 0.09	h : 0.07	d : 0.05	b : 0.05	" : 0.05	# : 0.03	i : 0.03	! : 0.03	G : 0.01	g : 0.01	C : 0.01	= : 0.01	
f : 0.18	c : 0.13	e : 0.11	g : 0.09	h : 0.07	d : 0.07	[ : 0.05	b : 0.05	" : 0.05	! : 0.03	i : 0.03	# : 0.01	: : 0.01	a : 0.01	= : 0.01	
f : 0.30	e : 0.13	c : 0.09	d : 0.09	g : 0.09	h : 0.07	i : 0.03	[ : 0.03	b : 0.03	! : 0.01	a : 0.01	: : 0.01	" : 0.01	= : 0.01	
f : 0.30	d : 0.13	e : 0.13	g : 0.09	h : 0.07	c : 0.05	[ : 0.05	! : 0.05	" : 0.01	b : 0.01	# : 0.01	i : 0.01	= : 0.01	
f : 0.26	d : 0.15	e : 0.13	! : 0.09	g : 0.09	h : 0.05	[ : 0.03	b : 0.03	a : 0.03	" : 0.01	c : 0.01	# : 0.01	i : 0.01	= : 0.01	
f : 0.22	c : 0.15	e : 0.11	d : 0.09	g : 0.09	[ : 0.07	h : 0.05	! : 0.05	y : 0.03	" : 0.01	b : 0.01	# : 0.01	i : 0.01	= : 0.01	
f : 0.18	c : 0.15	b : 0.11	g : 0.09	w : 0.07	d : 0.07	y : 0.07	e : 0.07	h : 0.05	# : 0.01	! : 0.01	[ : 0.01	i : 0.01	= : 0.01	
c : 0.15	b : 0.15	v : 0.13	f : 0.11	w : 0.09	g : 0.07	y : 0.07	h : 0.05	d : 0.03	e : 0.03	a : 0.03	i : 0.01	= : 0.01	
t : 0.24	v : 0.22	u : 0.22	w : 0.11	y : 0.09	b : 0.03	c : 0.01	i : 0.01	= : 0.01	
t : 0.33	v : 0.22	u : 0.22	w : 0.11	y : 0.09	
t : 0.33	v : 0.22	u : 0.22	w : 0.11	y : 0.09	
t : 0.33	v : 0.22	u : 0.22	w : 0.11	y : 0.09	
t : 0.33	v : 0.22	u : 0.22	w : 0.11	y : 0.09	
t : 0.33	v : 0.22	u : 0.22	w : 0.11	y : 0.09	
t : 0.33	v : 0.22	u : 0.22	w : 0.11	y : 0.09	
t : 0.33	v : 0.22	u : 0.22	w : 0.11	y : 0.09	
t : 0.33	v : 0.22	u : 0.22	w : 0.11	y : 0.09	
t : 0.33	v : 0.22	u : 0.22	w : 0.11	y : 0.09	
t : 0.33	v : 0.22	u : 0.22	w : 0.11	y : 0.09	
v : 0.22	u : 0.22	w : 0.11	f : 0.09	t : 0.09	y : 0.09	c : 0.07	g : 0.07	
f : 0.18	c : 0.15	b : 0.13	v : 0.09	y : 0.09	g : 0.07	e : 0.07	d : 0.05	h : 0.03	w : 0.03	a : 0.01	i : 0.01	= : 0.01	
f : 0.18	c : 0.15	b : 0.15	d : 0.11	g : 0.09	e : 0.09	h : 0.05	y : 0.05	w : 0.01	a : 0.01	] : 0.01	i : 0.01	= : 0.01	
f : 0.22	] : 0.15	d : 0.13	c : 0.09	g : 0.09	e : 0.09	h : 0.05	b : 0.03	2 : 0.01	y : 0.01	4 : 0.01	i : 0.01	3 : 0.01	= : 0.01	
f : 0.24	d : 0.15	e : 0.13	g : 0.09	h : 0.07	c : 0.05	2 : 0.03	] : 0.03	a : 0.03	6 : 0.01	b : 0.01	y : 0.01	4 : 0.01	i : 0.01	3 : 0.01	= : 0.01	
f : 0.24	e : 0.16	d : 0.09	g : 0.09	h : 0.07	c : 0.05	] : 0.05	2 : 0.03	i : 0.03	6 : 0.01	: : 0.01	b : 0.01	4 : 0.01	a : 0.01	3 : 0.01	= : 0.01	

#score	1175.9853218816377
#seq	53
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF311TOZ_IGF2BP3_CDS_m2_run2.txt

#BEAR
ddddqqqqqqqqdddd	chr20:24944304-24944553(-)$1	249	142	158	13.2923
ddddqqqqqqqqdddd	chr16:3777695-3778042(-)$1	347	227	243	13.2923
ddddqqqqqqqqdddd	chr2:21225281-21225518(-)$1	237	41	57	13.2923
ffffqqqqqqqqffff	chrX:47087893-47088144(+)$1	251	222	238	12.3108
:cccqqqqqqqqccc:	chr8:131124237-131124531(-)$1	294	52	68	12.3181
cccaqqqqqqqqa]cc	chr1:154229486-154229814(+)$1	328	36	52	13.4902
ddddqqqqqqqqdddd	chr19:49469531-49469756(+)$1	225	151	167	13.2923
eeeeqqqqqqqqeeee	chr19:15353608-15353864(-)$1	256	205	221	12.7952
!cccqqqqqqqqccc2	chrM:15061-15278(+)$1	217	187	203	14.0710
ffffqqqqqqqqffff	chr12:53860939-53861178(+)$1	239	186	202	12.3108
iibbqqqqqqqqbb44	chr2:21236035-21236245(-)$1	210	152	168	12.9163
!cccqqqqqqqqccce	chr19:45322030-45322240(+)$1	210	102	118	14.0527
$$bbqqqqqqqqbb22	chr3:184039174-184039460(+)$1	286	247	263	12.1754
eebbqqqqqqqqbb]e	chr8:101721310-101721551(-)$1	241	98	114	12.7468
iiiiqqqqqqqqiiii	chr14:23236418-23236649(+)$1	231	9	25	13.0947
Fcccqqqqqqqqccc:	chr4:83763449-83763734(-)$1	285	116	132	12.7309
eeeeqqqqqqqqeeee	chr22:38271820-38272099(+)$1	279	99	115	12.7952
c[bbqqqqqqqqbb]c	chr2:70315521-70315776(+)$1	255	31	47	12.8206
eeeeqqqqqqqqeeee	chr6:138417392-138417649(-)$1	257	39	55	12.7952
ddbbqqqqqqqqbb]d	chr5:179393718-179394028(-)$1	310	211	227	12.8699
[cccqqqqqqqqccc]	chr7:139259772-139260063(-)$1	291	146	162	14.0943
ddddqqqqqqqqdddd	chr19:6720426-6720638(-)$1	212	116	132	13.2923
dd[aqqqqqqqqa]dd	chr2:21230744-21230995(-)$1	251	83	99	13.2085
g[bbqqqqqqqqbb33	chrM:7739-7991(+)$1	252	18	34	13.0356
[cccqqqqqqqqccc]	chr8:38961053-38961316(+)$1	263	171	187	14.0943
ddddqqqqqqqqdddd	chr8:101719067-101719307(-)$1	240	81	97	13.2923
ffffqqqqqqqqffff	chr5:42806951-42807243(-)$1	292	248	264	12.3108
[cccqqqqqqqqccc2	chr12:9268270-9268501(-)$1	231	14	30	14.0148
:cccqqqqqqqqccc:	chr3:52028957-52029167(-)$1	210	64	80	12.3181
:cccqqqqqqqqccc:	chr12:57009131-57009422(-)$1	291	68	84	12.3181
ddddqqqqqqqqdddd	chr8:120252354-120252599(+)$1	245	110	126	13.2923
!cccqqqqqqqqccc2	chr17:60060170-60060475(-)$1	305	137	153	14.0710
eeeeqqqqqqqqeeee	chr5:149781447-149781727(-)$1	280	206	222	12.7952
dcccqqqqqqqqccc:	chr8:101717172-101717384(-)$1	212	22	38	13.1695
ddddqqqqqqqqdddd	chr14:21162045-21162382(+)$1	337	296	312	13.2923
:cccqqqqqqqqccc:	chr7:103113244-103113455(-)$1	211	119	135	12.3181
#cccqqqqqqqqccc2	chr2:21230882-21231129(-)$1	247	65	81	13.9638
ddddqqqqqqqqdddd	chr2:21228911-21229132(-)$1	221	46	62	13.2923
ffffqqqqqqqqffff	chr6:34212909-34213134(+)$1	225	31	47	12.3108
ddddqqqqqqqqdddd	chr2:21228008-21228237(-)$1	229	199	215	13.2923
b[bbqqqqqqqqbb]b	chr5:149919579-149919887(+)$1	308	114	130	12.3428
#cccqqqqqqqqccc3	chr2:21230631-21230860(-)$1	229	176	192	14.1144
c[bbqqqqqqqqbbcc	chr12:69746917-69747154(+)$1	237	202	218	12.9819
eeeeqqqqqqqqeeee	chr2:21227369-21227594(-)$1	225	38	54	12.7952
bcccqqqqqqqqccc]	chr19:15354121-15354399(-)$1	278	245	261	13.7414
[a[aqqqqqqqqaadd	chr14:54898744-54899027(-)$1	283	73	89	13.3199
eeeeqqqqqqqqeeee	chr14:65406377-65406616(-)$1	239	79	95	12.7952
eeeeqqqqqqqqeeee	chr20:48744411-48744652(-)$1	241	63	79	12.7952
[cccqqqqqqqqccca	chr2:43451476-43451721(-)$1	245	20	36	14.0010
ddddqqqqqqqqdddd	chrX:100646431-100646652(+)$1	221	12	28	13.2923
ddddqqqqqqqqdddd	chr16:21994396-21994654(+)$1	258	34	50	13.2923
Acccqqqqqqqqccc:	chr2:21226073-21226278(-)$1	205	10	26	12.4237
ee[aqqqqqqqqa]ee	chr5:180666040-180666278(-)$1	238	127	143	13.0219
ddddqqqqqqqqdddd	chr12:9224879-9225095(-)$1	216	104	120	13.2923
""bbqqqqqqqqbb33	chr6:30711577-30711835(-)$1	258	137	153	13.0332
ggggqqqqqqqqgggg	chr12:1017655-1017953(+)$1	298	204	220	13.0093
!cccqqqqqqqqccc5	chr9:130947784-130948069(-)$1	285	35	51	13.4211
cc[aqqqqqqqqa]cc	chr17:80543743-80544022(+)$1	279	226	242	13.3268
====qqqqqqqq====	chr12:46754731-46755007(-)$1	276	253	269	13.2933
"""aqqqqqqqqa333	chr7:97911584-97911838(+)$1	254	142	158	13.2685
ffffqqqqqqqqffff	chr17:15961122-15961432(-)$1	310	259	275	12.3108
!cccqqqqqqqqccc3	chr19:50000746-50000952(+)$1	206	70	86	14.2217
#cccqqqqqqqqccc2	chr2:21230814-21231082(-)$1	268	18	34	13.9638
!cccqqqqqqqqcccg	chr2:54849459-54849716(+)$1	257	53	69	14.0213
eeeeqqqqqqqqeeee	chr8:22275132-22275395(+)$1	263	142	158	12.7952
====qqqqqqqq====	chr1:43394565-43394792(-)$1	227	60	76	13.2933
:cccqqqqqqqqcccC	chr4:74272260-74272480(+)$1	220	44	60	12.1895
ddddqqqqqqqqdddd	chr8:120252399-120252647(+)$1	248	65	81	13.2923
hhhhqqqqqqqqhhhh	chr2:21227852-21228054(-)$1	202	181	197	11.8893
ddddqqqqqqqqdddd	chr12:7045732-7045985(+)$1	253	17	33	13.2923
e[bbqqqqqqqqbbee	chr12:53849568-53849790(+)$1	222	41	57	12.8251
!cccqqqqqqqqccc2	chr6:132193961-132194235(+)$1	274	134	150	14.0710
g[bbqqqqqqqqbbgg	chr14:23237089-23237358(+)$1	269	196	212	12.8289

#otherMatches

#Seq PSSM
GUCUUCACACUCAGGC	chr20:24944304-24944553(-)$1	249	142	158	13.2923
GCUGAACACCCCCAGC	chr16:3777695-3778042(-)$1	347	227	243	13.2923
UUGAAAGAUUUAUCAA	chr2:21225281-21225518(-)$1	237	41	57	13.2923
GCUUUCCCCCACAGGC	chrX:47087893-47088144(+)$1	251	222	238	12.3108
AGGAUUCAGCACUCCA	chr8:131124237-131124531(-)$1	294	52	68	12.3181
GCUCCCCCUUUUGAAG	chr1:154229486-154229814(+)$1	328	36	52	13.4902
AUGGCUACCCAACCAU	chr19:49469531-49469756(+)$1	225	151	167	13.2923
UUUUGUCCUCAGGAAG	chr19:15353608-15353864(-)$1	256	205	221	12.7952
UACUCAGUAGACAGUC	chrM:15061-15278(+)$1	217	187	203	14.0710
GGCCAGUCCCAAGGUC	chr12:53860939-53861178(+)$1	239	186	202	12.3108
UCGGGCUCGUUACCAC	chr2:21236035-21236245(-)$1	210	152	168	12.9163
GUCCAAGGUUCAGGGG	chr19:45322030-45322240(+)$1	210	102	118	14.0527
UUUGGCAUCUCACACA	chr3:184039174-184039460(+)$1	286	247	263	12.1754
AGACUCAGAACCGUGC	chr8:101721310-101721551(-)$1	241	98	114	12.7468
GGGGCUCCAUCAUCCU	chr14:23236418-23236649(+)$1	231	9	25	13.0947
GCCGUAUCCCUUCGGA	chr4:83763449-83763734(-)$1	285	116	132	12.7309
CGUCGUUACCAGGAUG	chr22:38271820-38272099(+)$1	279	99	115	12.7952
ACAACACACCAUUUCU	chr2:70315521-70315776(+)$1	255	31	47	12.8206
CCAUGCUCUUCUGUGG	chr6:138417392-138417649(-)$1	257	39	55	12.7952
UUGCAGUAACAAGUAA	chr5:179393718-179394028(-)$1	310	211	227	12.8699
CGGGCCCCCACUUCCA	chr7:139259772-139260063(-)$1	291	146	162	14.0943
GUGGUUAUGACUCUAC	chr19:6720426-6720638(-)$1	212	116	132	13.2923
AAUCACAAAUUAGUUU	chr2:21230744-21230995(-)$1	251	83	99	13.2085
GCUCAGGAAAUAGAAA	chrM:7739-7991(+)$1	252	18	34	13.0356
UUAACCUUCUUUUUGC	chr8:38961053-38961316(+)$1	263	171	187	14.0943
GCAUUCCAAAAUAUGC	chr8:101719067-101719307(-)$1	240	81	97	13.2923
UUGUACAUACACACAA	chr5:42806951-42807243(-)$1	292	248	264	12.3108
UACAAUACAGUCUGUU	chr12:9268270-9268501(-)$1	231	14	30	14.0148
UGGUAUCAAGAAACCC	chr3:52028957-52029167(-)$1	210	64	80	12.3181
UGUAUCUCACACUACU	chr12:57009131-57009422(-)$1	291	68	84	12.3181
GCAGCCACAUCCCUGC	chr8:120252354-120252599(+)$1	245	110	126	13.2923
UUCCAACUCCAAGGAC	chr17:60060170-60060475(-)$1	305	137	153	14.0710
GCCUCCAACACAAGGC	chr5:149781447-149781727(-)$1	280	206	222	12.7952
CCCAGUUUAAUGUGGU	chr8:101717172-101717384(-)$1	212	22	38	13.1695
AGAAUCAGAGUCUUCU	chr14:21162045-21162382(+)$1	337	296	312	13.2923
AUGAUGAAUUUUUCAC	chr7:103113244-103113455(-)$1	211	119	135	12.3181
AUUGAACAUCCCCAAA	chr2:21230882-21231129(-)$1	247	65	81	13.9638
GGAGAAGCCACACUCC	chr2:21228911-21229132(-)$1	221	46	62	13.2923
CUAACAUCCCACUUAG	chr6:34212909-34213134(+)$1	225	31	47	12.3108
GUUUGAAAAACAAAGC	chr2:21228008-21228237(-)$1	229	199	215	13.2923
CCUGUACACCUUCAAG	chr5:149919579-149919887(+)$1	308	114	130	12.3428
GGAGGCAUGAUGCUCA	chr2:21230631-21230860(-)$1	229	176	192	14.1144
GAGCAAAAUAUGGCCU	chr12:69746917-69747154(+)$1	237	202	218	12.9819
CCUAUACAGUUUUGGG	chr2:21227369-21227594(-)$1	225	38	54	12.7952
CCCAAGUGCUGCUGGA	chr19:15354121-15354399(-)$1	278	245	261	13.7414
UGUGUUUUCCUUCCAG	chr14:54898744-54899027(-)$1	283	73	89	13.3199
AGAUCCUGAACAGUCU	chr14:65406377-65406616(-)$1	239	79	95	12.7952
GGCAUGUCAUCCUGCC	chr20:48744411-48744652(-)$1	241	63	79	12.7952
cgcgacccuccccgcc	chr2:43451476-43451721(-)$1	245	20	36	14.0010
UAGGUUAACGUCCCUA	chrX:100646431-100646652(+)$1	221	12	28	13.2923
GCCAGAAGUCAAUGGC	chr16:21994396-21994654(+)$1	258	34	50	13.2923
GUACUAUAUUGUGUAA	chr2:21226073-21226278(-)$1	205	10	26	12.4237
GAAGACCAACCACAUU	chr5:180666040-180666278(-)$1	238	127	143	13.0219
AAGCCCACACCAGCUU	chr12:9224879-9225095(-)$1	216	104	120	13.2923
ACUCCCCAAAAAGAAU	chr6:30711577-30711835(-)$1	258	137	153	13.0332
UUCCAACCUGUGGGAA	chr12:1017655-1017953(+)$1	298	204	220	13.0093
UGGCAUCCCCAGGCCU	chr9:130947784-130948069(-)$1	285	35	51	13.4211
AGCGAACACGUACACU	chr17:80543743-80544022(+)$1	279	226	242	13.3268
UAAGUGAACUUUUUUG	chr12:46754731-46755007(-)$1	276	253	269	13.2933
CAACUCUAUCGUGGUC	chr7:97911584-97911838(+)$1	254	142	158	13.2685
GGGGAAAGCAGAUUUC	chr17:15961122-15961432(-)$1	310	259	275	12.3108
CUGGUAAUGUGUCCAU	chr19:50000746-50000952(+)$1	206	70	86	14.2217
AUUGAACAUCCCCAAA	chr2:21230814-21231082(-)$1	268	18	34	13.9638
UUGAACAAACCAUCAU	chr2:54849459-54849716(+)$1	257	53	69	14.0213
GCAGCCACUUCUCUGC	chr8:22275132-22275395(+)$1	263	142	158	12.7952
GUGGCACUGACACUGU	chr1:43394565-43394792(-)$1	227	60	76	13.2933
AAGUUUUAUUAUACUA	chr4:74272260-74272480(+)$1	220	44	60	12.1895
GCAGCCACAUCCCUGC	chr8:120252399-120252647(+)$1	248	65	81	13.2923
UGUGAGUAGAUGUACA	chr2:21227852-21228054(-)$1	202	181	197	11.8893
GGGUCCCCCACCACCU	chr12:7045732-7045985(+)$1	253	17	33	13.2923
CCUGUACAUACUCAGA	chr12:53849568-53849790(+)$1	222	41	57	12.8251
CUGAAACAUUUCUUAC	chr6:132193961-132194235(+)$1	274	134	150	14.0710
GCUGGGGUCAUACACC	chr14:23237089-23237358(+)$1	269	196	212	12.8289

#DB
((((........))))	chr20:24944304-24944553(-)$1	1	142	158	13.2923
((((........))))	chr16:3777695-3778042(-)$1	1	227	243	13.2923
((((........))))	chr2:21225281-21225518(-)$1	1	41	57	13.2923
((((........))))	chrX:47087893-47088144(+)$1	1	222	238	12.3108
.(((........))).	chr8:131124237-131124531(-)$1	1	52	68	12.3181
((((........).))	chr1:154229486-154229814(+)$1	1	36	52	13.4902
((((........))))	chr19:49469531-49469756(+)$1	1	151	167	13.2923
((((........))))	chr19:15353608-15353864(-)$1	1	205	221	12.7952
.(((........))).	chrM:15061-15278(+)$1	1	187	203	14.0710
((((........))))	chr12:53860939-53861178(+)$1	1	186	202	12.3108
((((........))..	chr2:21236035-21236245(-)$1	1	152	168	12.9163
.(((........))))	chr19:45322030-45322240(+)$1	1	102	118	14.0527
..((........))..	chr3:184039174-184039460(+)$1	1	247	263	12.1754
((((........)).)	chr8:101721310-101721551(-)$1	1	98	114	12.7468
((((........))))	chr14:23236418-23236649(+)$1	1	9	25	13.0947
((((........))).	chr4:83763449-83763734(-)$1	1	116	132	12.7309
((((........))))	chr22:38271820-38272099(+)$1	1	99	115	12.7952
(.((........)).)	chr2:70315521-70315776(+)$1	1	31	47	12.8206
((((........))))	chr6:138417392-138417649(-)$1	1	39	55	12.7952
((((........)).)	chr5:179393718-179394028(-)$1	1	211	227	12.8699
.(((........))).	chr7:139259772-139260063(-)$1	1	146	162	14.0943
((((........))))	chr19:6720426-6720638(-)$1	1	116	132	13.2923
((.(........).))	chr2:21230744-21230995(-)$1	1	83	99	13.2085
(.((........))..	chrM:7739-7991(+)$1	1	18	34	13.0356
.(((........))).	chr8:38961053-38961316(+)$1	1	171	187	14.0943
((((........))))	chr8:101719067-101719307(-)$1	1	81	97	13.2923
((((........))))	chr5:42806951-42807243(-)$1	1	248	264	12.3108
.(((........))).	chr12:9268270-9268501(-)$1	1	14	30	14.0148
.(((........))).	chr3:52028957-52029167(-)$1	1	64	80	12.3181
.(((........))).	chr12:57009131-57009422(-)$1	1	68	84	12.3181
((((........))))	chr8:120252354-120252599(+)$1	1	110	126	13.2923
.(((........))).	chr17:60060170-60060475(-)$1	1	137	153	14.0710
((((........))))	chr5:149781447-149781727(-)$1	1	206	222	12.7952
)(((........))).	chr8:101717172-101717384(-)$1	1	22	38	13.1695
((((........))))	chr14:21162045-21162382(+)$1	1	296	312	13.2923
.(((........))).	chr7:103113244-103113455(-)$1	1	119	135	12.3181
.(((........))).	chr2:21230882-21231129(-)$1	1	65	81	13.9638
((((........))))	chr2:21228911-21229132(-)$1	1	46	62	13.2923
((((........))))	chr6:34212909-34213134(+)$1	1	31	47	12.3108
((((........))))	chr2:21228008-21228237(-)$1	1	199	215	13.2923
(.((........)).)	chr5:149919579-149919887(+)$1	1	114	130	12.3428
.(((........))).	chr2:21230631-21230860(-)$1	1	176	192	14.1144
(.((........))))	chr12:69746917-69747154(+)$1	1	202	218	12.9819
((((........))))	chr2:21227369-21227594(-)$1	1	38	54	12.7952
((((........))).	chr19:15354121-15354399(-)$1	1	245	261	13.7414
.(.(........))))	chr14:54898744-54899027(-)$1	1	73	89	13.3199
((((........))))	chr14:65406377-65406616(-)$1	1	79	95	12.7952
((((........))))	chr20:48744411-48744652(-)$1	1	63	79	12.7952
.(((........))))	chr2:43451476-43451721(-)$1	1	20	36	14.0010
((((........))))	chrX:100646431-100646652(+)$1	1	12	28	13.2923
((((........))))	chr16:21994396-21994654(+)$1	1	34	50	13.2923
((((........))).	chr2:21226073-21226278(-)$1	1	10	26	12.4237
((.(........).))	chr5:180666040-180666278(-)$1	1	127	143	13.0219
((((........))))	chr12:9224879-9225095(-)$1	1	104	120	13.2923
..((........))..	chr6:30711577-30711835(-)$1	1	137	153	13.0332
((((........))))	chr12:1017655-1017953(+)$1	1	204	220	13.0093
.(((........))).	chr9:130947784-130948069(-)$1	1	35	51	13.4211
((.(........).))	chr17:80543743-80544022(+)$1	1	226	242	13.3268
((((........))))	chr12:46754731-46755007(-)$1	1	253	269	13.2933
...(........)...	chr7:97911584-97911838(+)$1	1	142	158	13.2685
((((........))))	chr17:15961122-15961432(-)$1	1	259	275	12.3108
.(((........))).	chr19:50000746-50000952(+)$1	1	70	86	14.2217
.(((........))).	chr2:21230814-21231082(-)$1	1	18	34	13.9638
.(((........))))	chr2:54849459-54849716(+)$1	1	53	69	14.0213
((((........))))	chr8:22275132-22275395(+)$1	1	142	158	12.7952
((((........))))	chr1:43394565-43394792(-)$1	1	60	76	13.2933
.(((........)))(	chr4:74272260-74272480(+)$1	1	44	60	12.1895
((((........))))	chr8:120252399-120252647(+)$1	1	65	81	13.2923
((((........))))	chr2:21227852-21228054(-)$1	1	181	197	11.8893
((((........))))	chr12:7045732-7045985(+)$1	1	17	33	13.2923
(.((........))))	chr12:53849568-53849790(+)$1	1	41	57	12.8251
.(((........))).	chr6:132193961-132194235(+)$1	1	134	150	14.0710
(.((........))))	chr14:23237089-23237358(+)$1	1	196	212	12.8289

#PSSM
d : 0.24	e : 0.15	! : 0.09	f : 0.06	: : 0.06	[ : 0.06	c : 0.05	g : 0.04	# : 0.04	i : 0.02	b : 0.02	" : 0.02	= : 0.02	$ : 0.01	F : 0.01	A : 0.01	h : 0.01	
c : 0.34	d : 0.23	e : 0.13	[ : 0.08	f : 0.06	i : 0.02	" : 0.02	= : 0.02	$ : 0.01	a : 0.01	g : 0.01	h : 0.01	
c : 0.32	d : 0.20	b : 0.15	e : 0.10	f : 0.06	[ : 0.05	= : 0.02	i : 0.01	g : 0.01	" : 0.01	h : 0.01	
c : 0.31	d : 0.20	b : 0.15	e : 0.10	a : 0.08	f : 0.06	= : 0.02	i : 0.01	g : 0.01	h : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.31	d : 0.20	b : 0.15	e : 0.10	a : 0.08	f : 0.06	= : 0.02	i : 0.01	g : 0.01	h : 0.01	
c : 0.31	d : 0.20	b : 0.15	e : 0.10	f : 0.06	] : 0.05	= : 0.02	i : 0.01	a : 0.01	g : 0.01	3 : 0.01	h : 0.01	
c : 0.35	d : 0.23	e : 0.13	f : 0.06	] : 0.05	3 : 0.04	g : 0.02	= : 0.02	4 : 0.01	2 : 0.01	i : 0.01	h : 0.01	
d : 0.24	e : 0.16	: : 0.09	2 : 0.09	f : 0.06	3 : 0.06	c : 0.05	] : 0.04	g : 0.04	= : 0.02	4 : 0.01	i : 0.01	b : 0.01	a : 0.01	5 : 0.01	C : 0.01	h : 0.01	

#score	957.7995308582261
#seq	73
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_transcript_m3_run2.txt

#BEAR
:ddddmmmmdddd:	chr12:46591729-46591944(-)$1	215	146	160	9.6532
ddddddllldddd]	chr1:230400886-230401178(+)$1	292	75	89	9.2684
[ddddmmmmdddd]	chr5:74650238-74650514(+)$1	276	172	186	11.9320
dddddmmmmdddd2	chr1:66064292-66064580(+)$1	288	52	66	11.2174
:ddddmmmmdddd:	chr1:155110555-155110842(+)$1	287	198	212	9.6532
!!ddddlllddddg	chr3:195798229-195798460(-)$1	231	177	191	8.8412
[ddddmmmmddddf	chr6:137519529-137519824(-)$1	295	129	143	11.2102
dddddmmmmdddd]	chr11:6637594-6637834(-)$1	240	143	157	11.2956
Hddddmmmmdddd:	chr6:33272152-33272443(-)$1	291	267	281	9.8404
!ddddmmmmdddd3	chr18:29121055-29121376(+)$1	321	59	73	11.9366
dddddmmmmdddd3	chr13:30097352-30097659(-)$1	307	63	77	11.2964
hddddmmmmddddE	chr8:124034823-124035121(-)$1	298	216	230	9.6840
!ddddmmmmdddd2	chr19:14516502-14516764(+)$1	262	177	191	11.8576
"ddddmmmmdddd4	chr16:2569467-2569696(+)$1	229	72	86	11.6666
!!ddddllldddd2	chr2:97559562-97559768(-)$1	206	72	86	9.3449
c[ddddllldddd]	chr1:32503375-32503650(+)$1	275	206	220	8.8491
[ddddmmmmdddd]	chrX:47444559-47444770(+)$1	211	151	165	11.9320
:ddddmmmmdddde	chr8:11706553-11706774(-)$1	221	131	145	10.0316
[ddddmmmmdddd]	chr19:13050801-13051061(+)$1	260	211	225	11.9320
[ddddmmmmdddd]	chr1:116936063-116936304(+)$1	241	127	141	11.9320
[ddddmmmmddddd	chr1:111703750-111704019(+)$1	269	133	147	11.1547
eddddmmmmdddd4	chr1:116932789-116933042(+)$1	253	115	129	11.1010
""ddddllldddd2	chr7:112757435-112757703(-)$1	268	81	95	9.1572
!ddddmmmmdddd4	chr3:43618312-43618606(-)$1	294	159	173	11.7259
[ddddmmmmdddd2	chr20:43138466-43138770(-)$1	304	122	136	11.8538
##ddddllldddd2	chr1:161832913-161833182(+)$1	269	77	91	9.0691
Eddddmmmmdddde	chr1:196684627-196684876(+)$1	249	16	30	9.8907
[ddddmmmmdddd]	chr15:45003702-45003911(+)$1	209	37	51	11.9320
#ddddmmmmdddd3	chr15:101814526-101814801(-)$1	275	54	68	11.8368
[ddddmmmmddddb	chr17:42089275-42089586(-)$1	311	31	45	11.0130
gddddmmmmdddd]	chr16:29675898-29676176(+)$1	278	191	205	11.4949
[ddddmmmmdddd]	chr2:10937161-10937417(-)$1	256	213	227	11.9320
!ddddmmmmdddd2	chr17:40672944-40673205(+)$1	261	110	124	11.8576
gddddmmmmdddd2	chr6:33272243-33272502(-)$1	259	180	194	11.4167
!ddddmmmmdddd2	chr1:116937699-116937978(+)$1	279	210	224	11.8576
fddddmmmmdddd6	chr1:180159464-180159685(+)$1	221	83	97	10.6680
#ddddllldddd33	chr12:110765389-110765698(+)$1	309	137	151	8.6626
"ddddmmmmdddde	chr1:116943383-116943609(+)$1	226	175	189	11.1694
:ddddmmmmdddd:	chr11:44135656-44135949(+)$1	293	58	72	9.6532
+ddddmmmmddddi	chr1:116932122-116932381(+)$1	259	113	127	10.5075
!ddddmmmmdddd2	chr21:46897224-46897486(+)$1	262	139	153	11.8576
[ddddmmmmdddd]	chr19:11558955-11559185(+)$1	230	111	125	11.9320
"ddddmmmmdddd]	chr14:53133079-53133314(-)$1	235	74	88	11.8765
fddddmmmmdddd:	chr3:41280597-41280910(+)$1	313	120	134	10.2202
!ddddmmmmddddd	chr20:35827436-35827687(+)$1	251	126	140	11.1585
[ddddmmmmdddd]	chr1:116936118-116936384(+)$1	266	72	86	11.9320
c[ddddllldddd]	chr4:83748422-83748685(-)$1	263	129	143	8.8491
cddddmmmmdddd]	chr11:44146238-44146504(+)$1	266	192	206	11.4472
hddddmmmmdddd]	chr1:111701996-111702250(+)$1	254	213	227	11.2717
[ddddmmmmddddg	chrX:119581596-119581869(-)$1	273	175	189	11.3501

#otherMatches

#Seq PSSM
UUAUGUCGUCAUAC	chr12:46591729-46591944(-)$1	215	146	160	9.6532
AGGUGAUUCUCACG	chr1:230400886-230401178(+)$1	292	75	89	9.2684
GAUGGAAACUCAUG	chr5:74650238-74650514(+)$1	276	172	186	11.9320
UGACAAGAUUGUCU	chr1:66064292-66064580(+)$1	288	52	66	11.2174
CUGAGGCUGCUCAU	chr1:155110555-155110842(+)$1	287	198	212	9.6532
AGGCUGCAACAGUU	chr3:195798229-195798460(-)$1	231	177	191	8.8412
UCCUUAGAAAAGGA	chr6:137519529-137519824(-)$1	295	129	143	11.2102
GCUCAGUAAUGAGU	chr11:6637594-6637834(-)$1	240	143	157	11.2956
CCAGUCACCACUGA	chr6:33272152-33272443(-)$1	291	267	281	9.8404
CAAGGUUAACCUUA	chr18:29121055-29121376(+)$1	321	59	73	11.9366
AUCCCCGUGGGGAU	chr13:30097352-30097659(-)$1	307	63	77	11.2964
AAAAGUGUCCUUUU	chr8:124034823-124035121(-)$1	298	216	230	9.6840
CUGCACCUCUGCAU	chr19:14516502-14516764(+)$1	262	177	191	11.8576
AGGAGCUUCCUCCA	chr16:2569467-2569696(+)$1	229	72	86	11.6666
ACAGCCAAAGGCUA	chr2:97559562-97559768(-)$1	206	72	86	9.3449
GCAUCCAGAGGAUA	chr1:32503375-32503650(+)$1	275	206	220	8.8491
CGAGGAGUUUCUCA	chrX:47444559-47444770(+)$1	211	151	165	11.9320
CGGAUCUGCAUCCA	chr8:11706553-11706774(-)$1	221	131	145	10.0316
GCCUCAUUGGGGGG	chr19:13050801-13051061(+)$1	260	211	225	11.9320
ACACCUGUUGGUGA	chr1:116936063-116936304(+)$1	241	127	141	11.9320
CAAACGUAUGUUUC	chr1:111703750-111704019(+)$1	269	133	147	11.1547
agaccuugggGUCC	chr1:116932789-116933042(+)$1	253	115	129	11.1010
UUCAACACAGUUGU	chr7:112757435-112757703(-)$1	268	81	95	9.1572
AGGAGGAGCCUCUG	chr3:43618312-43618606(-)$1	294	159	173	11.7259
UAGGGGCCGCCCUC	chr20:43138466-43138770(-)$1	304	122	136	11.8538
GAACUCAGGGAGUG	chr1:161832913-161833182(+)$1	269	77	91	9.0691
UUUCUUCUUAGAAU	chr1:196684627-196684876(+)$1	249	16	30	9.8907
CCGAGAUGUCUCGC	chr15:45003702-45003911(+)$1	209	37	51	11.9320
GUAGAAUGUUUUAA	chr15:101814526-101814801(-)$1	275	54	68	11.8368
AUCUCCCAGGAGGG	chr17:42089275-42089586(-)$1	311	31	45	11.0130
CAGACGGAAGUCUC	chr16:29675898-29676176(+)$1	278	191	205	11.4949
AAGGACUUUUCCUA	chr2:10937161-10937417(-)$1	256	213	227	11.9320
CAGAAUAAAUUCUA	chr17:40672944-40673205(+)$1	261	110	124	11.8576
ACCCUUCUGGGGGC	chr6:33272243-33272502(-)$1	259	180	194	11.4167
AGUGCCCAGGCGCC	chr1:116937699-116937978(+)$1	279	210	224	11.8576
CACACUCAUGUGUC	chr1:180159464-180159685(+)$1	221	83	97	10.6680
UUUGCAUUGCAGUC	chr12:110765389-110765698(+)$1	309	137	151	8.6626
GUUGGGCCUCCGAG	chr1:116943383-116943609(+)$1	226	175	189	11.1694
ACAAAAUACUUUGC	chr11:44135656-44135949(+)$1	293	58	72	9.6532
UCUCAUCCUUGAGU	chr1:116932122-116932381(+)$1	259	113	127	10.5075
ACGGGAGUGUCCGG	chr21:46897224-46897486(+)$1	262	139	153	11.8576
AGGCCGAGCGGUCG	chr19:11558955-11559185(+)$1	230	111	125	11.9320
GGUUUAAUAAGACA	chr14:53133079-53133314(-)$1	235	74	88	11.8765
CUGGUGCUGACUAU	chr3:41280597-41280910(+)$1	313	120	134	10.2202
CUUGGCAUCCCAAG	chr20:35827436-35827687(+)$1	251	126	140	11.1585
ACACCUGUUGGUGA	chr1:116936118-116936384(+)$1	266	72	86	11.9320
GUGCCCCAGGGGCU	chr4:83748422-83748685(-)$1	263	129	143	8.8491
CAGUGUUAGUACUC	chr11:44146238-44146504(+)$1	266	192	206	11.4472
AGUGUUAGAAUACA	chr1:111701996-111702250(+)$1	254	213	227	11.2717
UAUAGGUGUCUAUC	chrX:119581596-119581869(-)$1	273	175	189	11.3501

#DB
.((((....)))).	chr12:46591729-46591944(-)$1	1	146	160	9.6532
((((((...)))).	chr1:230400886-230401178(+)$1	1	75	89	9.2684
.((((....)))).	chr5:74650238-74650514(+)$1	1	172	186	11.9320
(((((....)))).	chr1:66064292-66064580(+)$1	1	52	66	11.2174
.((((....)))).	chr1:155110555-155110842(+)$1	1	198	212	9.6532
..((((...)))))	chr3:195798229-195798460(-)$1	1	177	191	8.8412
.((((....)))))	chr6:137519529-137519824(-)$1	1	129	143	11.2102
(((((....)))).	chr11:6637594-6637834(-)$1	1	143	157	11.2956
)((((....)))).	chr6:33272152-33272443(-)$1	1	267	281	9.8404
.((((....)))).	chr18:29121055-29121376(+)$1	1	59	73	11.9366
(((((....)))).	chr13:30097352-30097659(-)$1	1	63	77	11.2964
)((((....)))))	chr8:124034823-124035121(-)$1	1	216	230	9.6840
.((((....)))).	chr19:14516502-14516764(+)$1	1	177	191	11.8576
.((((....)))).	chr16:2569467-2569696(+)$1	1	72	86	11.6666
..((((...)))).	chr2:97559562-97559768(-)$1	1	72	86	9.3449
(.((((...)))).	chr1:32503375-32503650(+)$1	1	206	220	8.8491
.((((....)))).	chrX:47444559-47444770(+)$1	1	151	165	11.9320
.((((....))))(	chr8:11706553-11706774(-)$1	1	131	145	10.0316
.((((....)))).	chr19:13050801-13051061(+)$1	1	211	225	11.9320
.((((....)))).	chr1:116936063-116936304(+)$1	1	127	141	11.9320
.((((....)))))	chr1:111703750-111704019(+)$1	1	133	147	11.1547
(((((....)))).	chr1:116932789-116933042(+)$1	1	115	129	11.1010
..((((...)))).	chr7:112757435-112757703(-)$1	1	81	95	9.1572
.((((....)))).	chr3:43618312-43618606(-)$1	1	159	173	11.7259
.((((....)))).	chr20:43138466-43138770(-)$1	1	122	136	11.8538
..((((...)))).	chr1:161832913-161833182(+)$1	1	77	91	9.0691
(((((....))))(	chr1:196684627-196684876(+)$1	1	16	30	9.8907
.((((....)))).	chr15:45003702-45003911(+)$1	1	37	51	11.9320
.((((....)))).	chr15:101814526-101814801(-)$1	1	54	68	11.8368
.((((....)))))	chr17:42089275-42089586(-)$1	1	31	45	11.0130
(((((....)))).	chr16:29675898-29676176(+)$1	1	191	205	11.4949
.((((....)))).	chr2:10937161-10937417(-)$1	1	213	227	11.9320
.((((....)))).	chr17:40672944-40673205(+)$1	1	110	124	11.8576
(((((....)))).	chr6:33272243-33272502(-)$1	1	180	194	11.4167
.((((....)))).	chr1:116937699-116937978(+)$1	1	210	224	11.8576
(((((....)))).	chr1:180159464-180159685(+)$1	1	83	97	10.6680
.((((...))))..	chr12:110765389-110765698(+)$1	1	137	151	8.6626
.((((....)))))	chr1:116943383-116943609(+)$1	1	175	189	11.1694
.((((....)))).	chr11:44135656-44135949(+)$1	1	58	72	9.6532
.((((....)))))	chr1:116932122-116932381(+)$1	1	113	127	10.5075
.((((....)))).	chr21:46897224-46897486(+)$1	1	139	153	11.8576
.((((....)))).	chr19:11558955-11559185(+)$1	1	111	125	11.9320
.((((....)))).	chr14:53133079-53133314(-)$1	1	74	88	11.8765
)((((....)))).	chr3:41280597-41280910(+)$1	1	120	134	10.2202
.((((....)))))	chr20:35827436-35827687(+)$1	1	126	140	11.1585
.((((....)))).	chr1:116936118-116936384(+)$1	1	72	86	11.9320
(.((((...)))).	chr4:83748422-83748685(-)$1	1	129	143	8.8491
(((((....)))).	chr11:44146238-44146504(+)$1	1	192	206	11.4472
(((((....)))).	chr1:111701996-111702250(+)$1	1	213	227	11.2717
.((((....)))))	chrX:119581596-119581869(-)$1	1	175	189	11.3501

#PSSM
[ : 0.25	! : 0.18	: : 0.08	d : 0.08	" : 0.08	c : 0.06	# : 0.06	h : 0.04	g : 0.04	f : 0.04	H : 0.02	e : 0.02	E : 0.02	+ : 0.02	
d : 0.88	! : 0.04	[ : 0.04	" : 0.02	# : 0.02	
d : 1.00	
d : 1.00	
d : 1.00	
m : 0.84	d : 0.14	l : 0.02	
m : 0.84	l : 0.16	
m : 0.84	l : 0.16	
m : 0.84	l : 0.14	d : 0.02	
d : 1.00	
d : 1.00	
d : 1.00	
d : 0.98	3 : 0.02	
] : 0.32	2 : 0.19	: : 0.10	3 : 0.08	4 : 0.06	e : 0.06	g : 0.04	d : 0.04	f : 0.02	E : 0.02	b : 0.02	6 : 0.02	i : 0.02	

#score	543.2251504013681
#seq	50
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF717EQF_XRN2_transcript_m2_run1.txt

#BEAR
ggg$$$$$eeeee!!ddddmmmmdddd4444eeeeegggg	chr7:150784394-150784679(+)$1	285	93	133	12.6892
i[ccc[a[ccc[eeeeeooooooeeeeeccc]accc]iii	chr17:33416031-33416305(-)$1	274	147	187	14.9685
dddd####ggggggg[ddddmmmmdddd]gggggggdddd	chr17:7477102-7477310(+)$1	208	43	83	11.7372
===[bb[ffffffeeeeeooooooeeeee]ffffffbb]=	chr2:241904304-241904559(-)$1	255	200	240	13.7105
cc[a[ffffff!!eeeeeooooooeeeee333ffffff]a	chr17:79913316-79913634(-)$1	318	87	127	15.7328
!!ccc[ffffff!!eeeeemmmmeeeee]ffffff]ccc2	chr11:844146-844395(+)$1	249	94	134	12.4233
ggg!!dddd"""ccc[bbmmmmbb]ccc22dddd22gggg	chr3:185542400-185542670(-)$1	270	123	163	10.6189
cc[ggggggg[bb"""ddddmmmmdddd22bb]ggggggg	chr10:105397736-105398025(-)$1	289	158	198	13.3606
c[a[ffffff####ddddoooooodddd4444ffffffa]	chr19:1253807-1254083(+)$1	276	138	178	17.1314
ffccceeeeea[dddd[ammmma]dddd22a]eeeee]cc	chrX:16805156-16805441(+)$1	285	114	154	12.7111
[bb[ccc####ddddddddnnnnndddd4444dddd4444	chr1:205718916-205719160(-)$1	244	38	78	13.5368
dddd[ggggggg!!ddddccclllccc]ddddggggggg]	chr17:70536379-70536651(-)$1	272	54	94	11.6695
dddggggggg!!ffffffooooooffffffggggggg]dd	chr7:156400808-156401061(-)$1	253	36	76	12.8142
=====[ffffff####ddddmmmmdddd22ffffff22==	chr16:48418638-48418985(-)$1	347	235	275	13.0482
e]ddddggggggg[cccbboooooobb]ccc]ggggggg:	chr19:42758076-42758318(-)$1	242	28	68	10.9868
g[ccc####bb[dddd[ammmma]dddd]bbcccgggggg	chr2:42275452-42275696(+)$1	244	141	181	12.8154
===========[a[ddddoooooodddd22a]========	chr12:58005524-58005834(+)$1	310	22	62	18.9213
c[gggggggdddd!!ddddnnnnndddd22dddd]ggggg	chr4:2538867-2539155(+)$1	288	227	267	14.0161
ee[ccc[bb[a[ccc[ddddlllddddccca]bb]ccc22	chr3:9438256-9438525(-)$1	269	92	132	12.3601
dddd$$$$$bb"""eeeeemmmmeeeee333bb4444ddd	chr3:50258059-50258310(+)$1	251	203	243	11.8496
ffffff[ccc####ddddoooooodddd4444ccc]ffff	chr14:103570909-103571149(+)$1	240	126	166	16.8151
ggggggg[ffffffddddoooooodddd4444ffffff]g	chrX:70766843-70767053(+)$1	210	103	143	16.3927
gggeeeee[bb[ccc[bboooooobbccc]bbeeeeeddd	chr19:1470165-1470435(-)$1	270	152	192	11.7772
d[a[ccc[ccc[dddd[aooooooa]dddd22ccc333cc	chr1:247094687-247094955(-)$1	268	54	94	14.9657
=[a[eeeee"""a"""ddddllldddd333a333eeeee]	chr1:2199001-2199243(+)$1	242	54	94	14.9659
CCiiiiiiiii"""eeeeemmmmeeeee22iiiiiiiii:	chr2:65283579-65283934(+)$1	355	197	237	11.3983
e[hhhhhhhh[gggggggooooooggggggg]hhhhhhhh	chr2:44222624-44222902(-)$1	278	19	59	11.7139
=======!!dddd[eeeeemmmmeeeee]dddd22=====	chr18:9914734-9915034(+)$1	300	35	75	13.0354
b[bb[ccc[bb"""ddddoooooodddd]bb]ccc]bb]b	chr2:32582852-32583126(+)$1	274	41	81	15.4675
cccffffff[eeeee[ddddmmmmdddd4444eeeee22f	chr12:93835287-93835577(-)$1	290	240	280	12.3869
iiiiii[ccc[bb[eeeeennnnneeeee333bb]cccii	chr15:30113824-30114159(-)$1	335	182	222	14.1575
ggggggg"""a[agggggggmmmmggggggg]a]a22ggg	chr17:45772844-45773097(+)$1	253	179	219	12.0099
cccc[dddd[ccc!!cccooooooccc333ccc]dddd]c	chr7:92077251-92077498(+)$1	247	21	61	14.7484
cc:eeeeeeeeee[ddddoooooodddd22eeeee]eeee	chr20:361761-362018(+)$1	257	212	252	13.8212
ggg[ccc[a[a"""eeeeellleeeee]a]a]ccc]gggg	chr16:89627184-89627410(+)$1	226	111	151	14.7701
d"""a[ccc[ccc[eeeeennnnneeeeecccccc]a]dd	chr20:62370996-62371261(+)$1	265	34	74	13.1724
!!ccc[bb!!bb[eeeeeooooooeeeee333bb22bb]c	chr19:1253051-1253296(+)$1	245	12	52	14.9079
eeeee[ccc"""a[ddddnnnnndddda22ccceeeeedd	chr2:161263949-161264249(-)$1	300	25	65	13.7746
======dddd"""eeeeeooooooeeeee333dddd5555	chr6:36164207-36164439(-)$1	232	143	183	12.9017
===!!ccc####cccssssssssssccc333ccc22====	chr16:21513506-21513795(-)$1	289	121	161	11.5169
eee[eeeeea[bb[ddddoooooodddd]bb]a]eeeee]	chr20:35974133-35974397(+)$1	264	146	186	15.4367
::ggggggg!!cccddddoooooodddd]cccggggggg:	chr11:63894720-63894976(-)$1	256	203	243	13.7987
f"""dddd[bb!!ddddaooooooa]dddd22bb333ddd	chr14:64970737-64971130(+)$1	393	335	375	13.6062
eeebb[a"""ccc!!ddddnnnnndddd22ccc22a]bb]	chr22:19929695-19929971(+)$1	276	62	102	13.1996
ii"""ccc"""bb[eeeeemmmmeeeee]bbccciiiiii	chr2:101436774-101437059(+)$1	285	144	184	13.6698
iiiiiiddddffffff[aooooooa]ffffff]dddd]ii	chr2:178077630-178077889(+)$1	259	30	70	11.9929
gggggcccccc[afffffflllffffff4444a]ccciii	chr2:241559892-241560143(+)$1	251	61	101	12.0350
d!!ccc[dddd[ffffffooooooffffffddddccc22d	chr6:64283304-64283530(+)$1	226	44	84	11.5950
ffffff####eeeeecccooooooccc4444eeeee]fff	chrX:153597546-153597794(-)$1	248	90	130	13.6813
ggggggbb[dddd!!ddddllldddd]dddd]bb]ggggg	chr16:75285431-75285659(-)$1	228	144	184	12.0061
eee[eeeeea[bb[ddddoooooodddd]bb]a]eeeee]	chr20:35974197-35974468(+)$1	271	82	122	15.4367

#otherMatches

#Seq PSSM
GGUCGUGACCGGGGAGGCUUCUUAGCCGCUGCCCGGGCCC	chr7:150784394-150784679(+)$1	285	93	133	12.6892
CUCCUAGGUGCCGGCCGGGAGGGCGGCCGCAGCAGGUGAG	chr17:33416031-33416305(-)$1	274	147	187	14.9685
GGAUGACGUGGGGGGAAGGGGAUGUCCUACCCUCCGAUCU	chr17:7477102-7477310(+)$1	208	43	83	11.7372
UAGGAUACUUCCGUGUGCUGCUGUGCAUGCCGGAAGGUGU	chr2:241904304-241904559(-)$1	255	200	240	13.7105
CUGGGGGUGCUGAGCUCUGAGCCUGGGGUGGGGGCACUGC	chr17:79913316-79913634(-)$1	318	87	127	15.7328
UGGGGGCCUGGAGGCUUCUUGGAGGAGGGUCCAGGGCCUG	chr11:844146-844395(+)$1	249	94	134	12.4233
ccccccgccucgccccgcucaggccgggacggcgccggga	chr3:185542400-185542670(-)$1	270	123	163	10.6189
CACGCAGGAGGGACUGGAGGAGUUUCUCGCUCGCUCCUGU	chr10:105397736-105398025(-)$1	289	158	198	13.3606
CCCACAGCCCCCAgcggcgcccgggccgggccgggcUGGC	chr19:1253807-1254083(+)$1	276	138	178	17.1314
CGCUCCCCGCCACUGCGCGGGCGGGCAGGCGAGCGGGUGA	chrX:16805156-16805441(+)$1	285	114	154	12.7111
GGUCCUGUUUCGACAGCGAACAUGUCGCGGCCUGUCAGGU	chr1:205718916-205719160(-)$1	244	38	78	13.5368
CCAGCCGCCGGGCCGGUGCUGCCGCGGUCACCCCCGGCGC	chr17:70536379-70536651(-)$1	272	54	94	11.6695
CGUGUGUUCAGGGCCAGGAAGGAGCCUGGCUGGACGCUGC	chr7:156400808-156401061(-)$1	253	36	76	12.8142
ccccgcgcccUCGUGCCGGCCUUUGUUGUGGAGGGUCCCG	chr16:48418638-48418985(-)$1	347	235	275	13.0482
GCCAAGGUUCCCCUCCCCCUCGGUCGGCGGGCGGGGGGCA	chr19:42758076-42758318(-)$1	242	28	68	10.9868
gcgccugauggaccuggcuccgggcgggcccggccugccg	chr2:42275452-42275696(+)$1	244	141	181	12.8154
CCCCCCCUCCCACAGCCUGGACCGGGGUAGGAGGGAGGGG	chr12:58005524-58005834(+)$1	310	22	62	18.9213
CGGCCUCUGUCAGCCUCUUGAGAGGAGAACCUGAGCAGAG	chr4:2538867-2539155(+)$1	288	227	267	14.0161
CGGGCGUUGGUACGGUCCUCCCCGAGGCCGAGCGCCGCAG	chr3:9438256-9438525(-)$1	269	92	132	12.3601
GGCCACAGCUCACAUUCCACUGCUGGGAGAAGAAACAGGC	chr3:50258059-50258310(+)$1	251	203	243	11.8496
GGGCUGGGAGGCACGCUCAGUGCGGGGCUUCGCUCGCAGC	chr14:103570909-103571149(+)$1	240	126	166	16.8151
CUCGCAUUACAGGGACCUCAACCUAGGUGCAAUCCUGUCA	chrX:70766843-70767053(+)$1	210	103	143	16.3927
GCAGGCCCAUGGGGCAGCCAGACCGCGCCGCAGGGCCGGG	chr19:1470165-1470435(-)$1	270	152	192	11.7772
CGCGCUCACCCGCCCCGUUCAGGUAGGGGGAAGGGAGGGA	chr1:247094687-247094955(-)$1	268	54	94	14.9657
UCGGAAGCUGGGCAGUGGCCAGAGGCCUGGGAAAGGCUUG	chr1:2199001-2199243(+)$1	242	54	94	14.9659
CCUGCGGGGCCCUUGCGGUGCGGGCCGUCUGGCCUCGCGU	chr2:65283579-65283934(+)$1	355	197	237	11.3983
UCGUGGGUGCCGGCAGGGACCGGGUCCUGCCUGUGCUCGC	chr2:44222624-44222902(-)$1	278	19	59	11.7139
AGUGGGCUCUGGAGGUGGCGCAAGCUGCGUCUGUCGCCCG	chr18:9914734-9915034(+)$1	300	35	75	13.0354
GGCUGUCGGUCCUGCGUCCGGUUAGAUGAGAGCGAAAGGC	chr2:32582852-32583126(+)$1	274	41	81	15.4675
GGGGGUCUCUGGGCUUGGGCGCGGGCCUCCAUAGCUUCUG	chr12:93835287-93835577(-)$1	290	240	280	12.3869
ggcgcccggccgccgUACUGGGCAGGUGCAUAGCUGCCGG	chr15:30113824-30114159(-)$1	335	182	222	14.1575
GGGUGCCAGAGGCCCAGGCUGAGGAGCUUGGCGGCGAGGU	chr17:45772844-45773097(+)$1	253	179	219	12.0099
GGGGCGGGGGCGGCAAGCAGGUGAGCUCCUCCGGCCCCUC	chr7:92077251-92077498(+)$1	247	21	61	14.7484
GCGCGGCCAGGUCAGAUCCCUUUUGAUCCGGGCCUGGGCU	chr20:361761-362018(+)$1	257	212	252	13.8212
gggugcgcgcgcccggggUCCGGCCUCUCACUCGCUCCCC	chr16:89627184-89627410(+)$1	226	111	151	14.7701
GCGGUGUGGACGCCGCGCGGCCAAUGCGCGCGCcgggacg	chr20:62370996-62371261(+)$1	265	34	74	13.1724
ACACUGGGCUCCCCAGGGUUGCUUCCCUGCCUGGCACCGA	chr19:1253051-1253296(+)$1	245	12	52	14.9079
GGCGGAGGGGAAGUCAGCGCGGAGCUGCAgcccccgccgg	chr2:161263949-161264249(-)$1	300	25	65	13.7746
gccgccgccgccACGGGGCACCAUCCCCGGCUCGGCCUCA	chr6:36164207-36164439(-)$1	232	143	183	12.9017
GCCCCGCCGACAGGACCCGCCUCUCUCCGCAGGCACGGCG	chr16:21513506-21513795(-)$1	289	121	161	11.5169
CGGAGUGGGAGGCGGGGCUUCUGUGCCCGGUGUCCCCACC	chr20:35974133-35974397(+)$1	264	146	186	15.4367
AAGAGAUGACCGUAAAAGUUAAAUCUUUCUAUUUAUUUCA	chr11:63894720-63894976(-)$1	256	203	243	13.7987
UGGGCCCAACGGGCAGGGGUCUGACAUCUGGACGGAGUGG	chr14:64970737-64971130(+)$1	393	335	375	13.6062
CUGGAGUAGGGCUUGACCUGGUGAGGGUGUGGUAGAGUCA	chr22:19929695-19929971(+)$1	276	62	102	13.1996
AGUACGUGCGCGCGGGGUCGCAGGACUCGGUCACCUGCUC	chr2:101436774-101437059(+)$1	285	144	184	13.6698
GGAGCGGGGAGGCCGGGUGGACCGGGUCGGCCGUCCCGCG	chr2:178077630-178077889(+)$1	259	30	70	11.9929
CUGCCCCCAUCGUGGUCCUCUCAGGGCCCCUCAGGAUCCC	chr2:241559892-241560143(+)$1	251	61	101	12.0350
GCCUCGGCGCCCGCGCCUGACUGAAGGCGCGGCGCGAACC	chr6:64283304-64283530(+)$1	226	44	84	11.5950
GGGGCCUGAUGGGAAGCCCUGGCUGGCCUUGUUCCCUGGC	chrX:153597546-153597794(-)$1	248	90	130	13.6813
CUCUGGGUGGCCGAGGCGGCAGCUGCGCGGCGGCACCGGG	chr16:75285431-75285659(-)$1	228	144	184	12.0061
CGGAGUGGGAGGCGGGGCUUCUGUGCCCGGUGUCCCCACC	chr20:35974197-35974468(+)$1	271	82	122	15.4367

#DB
(((.....(((((..((((....))))....)))))))))	chr7:150784394-150784679(+)$1	1	93	133	12.6892
(.(((.(.(((.(((((......)))))))).)))).)))	chr17:33416031-33416305(-)$1	1	147	187	14.9685
((((....(((((((.((((....)))).)))))))))))	chr17:7477102-7477310(+)$1	1	43	83	11.7372
(((.((.(((((((((((......))))).)))))))).)	chr2:241904304-241904559(-)$1	1	200	240	13.7105
((.(.((((((..(((((......)))))...)))))).)	chr17:79913316-79913634(-)$1	1	87	127	15.7328
..(((.((((((..(((((....))))).)))))).))).	chr11:844146-844395(+)$1	1	94	134	12.4233
(((..((((...(((.((....)).)))..))))..))))	chr3:185542400-185542670(-)$1	1	123	163	10.6189
((.(((((((.((...((((....))))..)).)))))))	chr10:105397736-105398025(-)$1	1	158	198	13.3606
(.(.((((((....((((......))))....))))))).	chr19:1253807-1254083(+)$1	1	138	178	17.1314
(((((((((((.((((.(....).))))..).))))).))	chrX:16805156-16805441(+)$1	1	114	154	12.7111
.((.(((....((((((((.....))))....))))....	chr1:205718916-205719160(-)$1	1	38	78	13.5368
((((.(((((((..(((((((...))).))))))))))).	chr17:70536379-70536651(-)$1	1	54	94	11.6695
((((((((((..((((((......))))))))))))).))	chr7:156400808-156401061(-)$1	1	36	76	12.8142
(((((.((((((....((((....))))..))))))..))	chr16:48418638-48418985(-)$1	1	235	275	13.0482
).))))(((((((.(((((......)).))).))))))).	chr19:42758076-42758318(-)$1	1	28	68	10.9868
(.(((....((.((((.(....).)))).)))))))))))	chr2:42275452-42275696(+)$1	1	141	181	12.8154
(((((((((((.(.((((......))))..).))))))))	chr12:58005524-58005834(+)$1	1	22	62	18.9213
(.(((((((((((..((((.....))))..)))).)))))	chr4:2538867-2539155(+)$1	1	227	267	14.0161
((.(((.((.(.(((.((((...)))))))).)).)))..	chr3:9438256-9438525(-)$1	1	92	132	12.3601
((((.....((...(((((....)))))...))....)))	chr3:50258059-50258310(+)$1	1	203	243	11.8496
((((((.(((....((((......))))....))).))))	chr14:103570909-103571149(+)$1	1	126	166	16.8151
(((((((.((((((((((......))))....)))))).)	chrX:70766843-70767053(+)$1	1	103	143	16.3927
)))(((((.((.(((.((......))))).)))))))(((	chr19:1470165-1470435(-)$1	1	152	192	11.7772
(.(.(((.(((.((((.(......).))))..)))...))	chr1:247094687-247094955(-)$1	1	54	94	14.9657
(.(.(((((...(...((((...))))...)...))))).	chr1:2199001-2199243(+)$1	1	54	94	14.9659
(((((((((((...(((((....)))))..))))))))).	chr2:65283579-65283934(+)$1	1	197	237	11.3983
(.((((((((.(((((((......))))))).))))))))	chr2:44222624-44222902(-)$1	1	19	59	11.7139
(((((((..((((.(((((....))))).))))..)))))	chr18:9914734-9915034(+)$1	1	35	75	13.0354
(.((.(((.((...((((......)))).)).))).)).)	chr2:32582852-32583126(+)$1	1	41	81	15.4675
(((((((((.(((((.((((....))))....)))))..)	chr12:93835287-93835577(-)$1	1	240	280	12.3869
((((((.(((.((.(((((.....)))))...)).)))))	chr15:30113824-30114159(-)$1	1	182	222	14.1575
(((((((...(.((((((((....))))))).).)..)))	chr17:45772844-45773097(+)$1	1	179	219	12.0099
((((.((((.(((..(((......)))...))).)))).)	chr7:92077251-92077498(+)$1	1	21	61	14.7484
)).((((((((((.((((......))))..))))).))))	chr20:361761-362018(+)$1	1	212	252	13.8212
(((.(((.(.(...(((((...))))).).).))).))))	chr16:89627184-89627410(+)$1	1	111	151	14.7701
(...(.(((.(((.(((((.....))))))))))).).))	chr20:62370996-62371261(+)$1	1	34	74	13.1724
..(((.((..((.(((((......)))))...))..)).)	chr19:1253051-1253296(+)$1	1	12	52	14.9079
(((((.(((...(.((((.....)))))..))))))))((	chr2:161263949-161264249(-)$1	1	25	65	13.7746
((((((((((...(((((......)))))...))))....	chr6:36164207-36164439(-)$1	1	143	183	12.9017
(((..(((....(((..........)))...)))..))))	chr16:21513506-21513795(-)$1	1	121	161	11.5169
(((.((((((.((.((((......)))).)).).))))).	chr20:35974133-35974397(+)$1	1	146	186	15.4367
..(((((((..(((((((......)))).)))))))))).	chr11:63894720-63894976(-)$1	1	203	243	13.7987
(...((((.((..(((((......).))))..))...)))	chr14:64970737-64971130(+)$1	1	335	375	13.6062
(((((.(...(((..((((.....))))..)))..).)).	chr22:19929695-19929971(+)$1	1	62	102	13.1996
((...(((...((.(((((....))))).)))))))))))	chr2:101436774-101437059(+)$1	1	144	184	13.6698
((((((((((((((((.(......).)))))).)))).))	chr2:178077630-178077889(+)$1	1	30	70	11.9929
))))))))(((.(((((((...))))))....).)))(((	chr2:241559892-241560143(+)$1	1	61	101	12.0350
(..(((.((((.((((((......)))))))))))))..)	chr6:64283304-64283530(+)$1	1	44	84	11.5950
((((((....((((((((......)))....))))).)))	chrX:153597546-153597794(-)$1	1	90	130	13.6813
((((((((.((((..((((...)))).)))).)).)))))	chr16:75285431-75285659(-)$1	1	144	184	12.0061
(((.((((((.((.((((......)))).)).).))))).	chr20:35974197-35974468(+)$1	1	82	122	15.4367

#PSSM
g : 0.17	d : 0.13	= : 0.13	c : 0.13	e : 0.13	i : 0.07	f : 0.07	! : 0.03	[ : 0.01	C : 0.01	b : 0.01	: : 0.01	
g : 0.15	[ : 0.15	= : 0.11	c : 0.09	e : 0.09	d : 0.07	! : 0.05	f : 0.05	i : 0.05	" : 0.03	b : 0.01	] : 0.01	C : 0.01	: : 0.01	
g : 0.19	c : 0.13	= : 0.11	d : 0.09	e : 0.07	[ : 0.05	a : 0.05	i : 0.05	" : 0.05	b : 0.03	f : 0.03	h : 0.01	: : 0.01	! : 0.01	
c : 0.15	[ : 0.15	g : 0.15	d : 0.07	= : 0.07	f : 0.05	e : 0.05	i : 0.05	" : 0.05	! : 0.03	b : 0.03	$ : 0.01	a : 0.01	h : 0.01	
c : 0.19	g : 0.15	e : 0.11	[ : 0.07	f : 0.07	= : 0.07	i : 0.05	$ : 0.03	b : 0.03	! : 0.03	d : 0.03	# : 0.01	h : 0.01	a : 0.01	" : 0.01	
c : 0.17	g : 0.15	[ : 0.13	e : 0.11	f : 0.09	d : 0.07	= : 0.05	i : 0.05	$ : 0.03	# : 0.03	b : 0.01	h : 0.01	
c : 0.17	g : 0.15	e : 0.11	[ : 0.09	f : 0.09	d : 0.09	# : 0.05	$ : 0.03	a : 0.03	= : 0.03	b : 0.03	i : 0.01	h : 0.01	
c : 0.15	f : 0.11	d : 0.11	g : 0.11	e : 0.11	[ : 0.07	# : 0.07	b : 0.05	$ : 0.03	" : 0.03	= : 0.01	i : 0.01	h : 0.01	! : 0.01	
c : 0.13	g : 0.13	f : 0.13	e : 0.11	d : 0.09	# : 0.07	[ : 0.07	" : 0.05	! : 0.03	= : 0.01	b : 0.01	$ : 0.01	i : 0.01	h : 0.01	a : 0.01	
f : 0.11	" : 0.11	d : 0.11	c : 0.09	g : 0.09	b : 0.09	[ : 0.09	e : 0.05	# : 0.05	! : 0.03	a : 0.03	= : 0.01	i : 0.01	h : 0.01	
c : 0.11	f : 0.11	b : 0.11	" : 0.09	[ : 0.09	e : 0.07	# : 0.07	a : 0.07	d : 0.07	g : 0.05	! : 0.03	= : 0.01	i : 0.01	
[ : 0.19	" : 0.15	b : 0.11	f : 0.09	e : 0.07	g : 0.07	d : 0.07	c : 0.07	! : 0.05	# : 0.05	
c : 0.15	d : 0.13	e : 0.09	f : 0.09	b : 0.09	a : 0.09	" : 0.09	! : 0.07	g : 0.05	# : 0.05	[ : 0.01	
[ : 0.19	! : 0.13	e : 0.13	" : 0.11	c : 0.09	d : 0.09	f : 0.09	g : 0.05	# : 0.05	
d : 0.31	e : 0.29	! : 0.09	c : 0.09	f : 0.07	g : 0.05	" : 0.03	# : 0.01	
d : 0.39	e : 0.25	[ : 0.09	f : 0.07	c : 0.05	" : 0.03	g : 0.03	# : 0.01	s : 0.01	
d : 0.45	e : 0.25	[ : 0.07	f : 0.05	c : 0.05	b : 0.03	g : 0.03	s : 0.01	
d : 0.43	e : 0.23	a : 0.09	b : 0.05	f : 0.05	g : 0.03	c : 0.03	o : 0.01	s : 0.01	
o : 0.45	d : 0.21	e : 0.15	m : 0.05	c : 0.01	b : 0.01	g : 0.01	n : 0.01	s : 0.01	f : 0.01	
o : 0.47	m : 0.17	d : 0.11	n : 0.11	l : 0.05	c : 0.01	g : 0.01	s : 0.01	
o : 0.47	m : 0.27	n : 0.11	l : 0.09	c : 0.01	s : 0.01	
o : 0.47	m : 0.27	n : 0.11	l : 0.11	s : 0.01	
o : 0.47	m : 0.21	n : 0.11	l : 0.05	a : 0.03	b : 0.01	e : 0.01	s : 0.01	f : 0.01	d : 0.01	
o : 0.45	e : 0.13	d : 0.09	m : 0.09	n : 0.09	] : 0.03	b : 0.01	l : 0.01	s : 0.01	f : 0.01	
d : 0.45	e : 0.25	c : 0.05	f : 0.05	a : 0.05	g : 0.03	] : 0.01	o : 0.01	b : 0.01	s : 0.01	
d : 0.45	e : 0.25	c : 0.09	f : 0.05	] : 0.05	b : 0.03	g : 0.03	
d : 0.47	e : 0.25	c : 0.11	f : 0.07	g : 0.03	b : 0.01	] : 0.01	
d : 0.41	e : 0.23	c : 0.07	f : 0.07	] : 0.05	4 : 0.03	3 : 0.03	g : 0.03	a : 0.01	
2 : 0.19	] : 0.17	4 : 0.15	e : 0.11	c : 0.07	d : 0.07	3 : 0.07	f : 0.05	g : 0.03	a : 0.01	
2 : 0.19	4 : 0.15	3 : 0.15	c : 0.09	d : 0.09	b : 0.09	f : 0.07	g : 0.05	] : 0.05	
4 : 0.15	c : 0.13	b : 0.13	3 : 0.11	d : 0.11	a : 0.09	g : 0.07	f : 0.07	2 : 0.03	i : 0.01	e : 0.01	
] : 0.23	c : 0.15	4 : 0.11	3 : 0.09	d : 0.09	f : 0.07	e : 0.05	b : 0.05	g : 0.03	2 : 0.03	i : 0.01	
c : 0.21	e : 0.11	f : 0.11	d : 0.11	b : 0.11	a : 0.09	g : 0.09	] : 0.03	= : 0.01	3 : 0.01	i : 0.01	h : 0.01	
c : 0.17	e : 0.13	g : 0.11	f : 0.11	d : 0.11	b : 0.09	] : 0.09	2 : 0.03	= : 0.01	4 : 0.01	3 : 0.01	i : 0.01	h : 0.01	
e : 0.19	c : 0.15	g : 0.13	f : 0.11	2 : 0.09	d : 0.07	] : 0.07	i : 0.03	= : 0.01	4 : 0.01	h : 0.01	a : 0.01	3 : 0.01	
e : 0.17	g : 0.17	] : 0.11	c : 0.09	f : 0.09	2 : 0.07	d : 0.07	= : 0.03	3 : 0.03	i : 0.03	4 : 0.01	h : 0.01	a : 0.01	
g : 0.21	e : 0.15	c : 0.09	f : 0.07	] : 0.05	d : 0.05	b : 0.05	= : 0.05	4 : 0.03	2 : 0.03	3 : 0.03	i : 0.03	h : 0.01	a : 0.01	5 : 0.01	
g : 0.21	d : 0.09	f : 0.09	e : 0.09	i : 0.07	b : 0.07	] : 0.07	c : 0.05	2 : 0.05	= : 0.05	4 : 0.01	3 : 0.01	h : 0.01	5 : 0.01	
g : 0.21	d : 0.13	i : 0.11	] : 0.11	= : 0.07	e : 0.07	c : 0.05	2 : 0.05	f : 0.03	a : 0.01	4 : 0.01	h : 0.01	5 : 0.01	b : 0.01	
g : 0.17	d : 0.15	] : 0.11	i : 0.09	= : 0.09	c : 0.07	: : 0.05	f : 0.05	2 : 0.03	a : 0.01	4 : 0.01	h : 0.01	b : 0.01	e : 0.01	5 : 0.01	

#score	688.2612915296907
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF575BCP_AKAP1_transcript_m3_run1.txt

#BEAR
ee[bb[bbddddmmmmdddd]bb22b	chr16:46963495-46963757(+)$1	262	207	233	10.9333
BBccc"""ddddmmmmdddd333ccc	chr15:74005774-74006065(+)$1	291	16	42	13.2252
ggg[ccc[ddddmmmmdddd]cccgg	chr7:100781279-100781519(+)$1	240	186	212	13.3399
accc[gggggggmmmmggggggg]cc	chr17:79861778-79862026(-)$1	248	132	158	8.5415
iiii####ddddmmmmddddiiiiii	chr20:30824448-30824689(+)$1	241	167	193	13.6764
ffccc[bb[ddddllldddd]bbccc	chr17:37075651-37075899(+)$1	248	185	211	10.1591
[ccc####ddddnnnnndddd333cc	chr2:242512757-242512990(+)$1	233	148	174	12.3150
hhhh[cccddddoooooodddd]ccc	chr3:133539190-133539497(+)$1	307	222	248	10.7187
ddgggggggddddllldddd4444gg	chr16:27472128-27472384(-)$1	256	141	167	11.2325
Ebbccc!!ddddmmmmdddd22ccc]	chr10:102121792-102122017(+)$1	225	191	217	12.1950
e]accc!!ddddoooooodddd22cc	chr14:21485028-21485298(-)$1	270	139	165	11.9631
dddd####ddddmmmmdddd333ddd	chr2:30382032-30382403(+)$1	371	224	250	14.7146
eeee[cccddddoooooodddd>>>>	chr1:9988569-9988889(-)$1	320	254	280	10.0438
c"""bb"""cccmmmmccc22bbccc	chr2:231913051-231913344(+)$1	293	202	228	9.0744
eeeee[a!!cccmmmmccc22a]eee	chr16:4506048-4506414(+)$1	366	30	56	9.4777
$$$ccc!!ddddmmmmddddcccddd	chr11:204770-205064(-)$1	294	143	169	12.3831
hhhdddd[ddddoooooodddddddd	chr7:56078806-56079117(-)$1	311	151	177	10.1257
f:::ccc[ddddmmmmdddd4444cc	chr17:80196913-80197127(+)$1	214	137	163	10.9904
ddccc####ddddllldddd333ccc	chr9:127113617-127113868(+)$1	251	188	214	12.9711
hhhhhhh[ddddmmmmdddd]hhhhh	chr11:71145486-71145804(-)$1	318	12	38	10.9109
ggggggg[ddddlllddddggggggg	chr16:1374980-1375263(+)$1	283	119	145	10.5046
gggggggeeeeemmmmeeeeeggggg	chr3:13546140-13546397(+)$1	257	146	172	8.9988
ff"""bb[ddddmmmmdddd333bb4	chr2:20401274-20401568(-)$1	294	190	216	12.9701
ffccc[bb[ddddllldddd]bbccc	chr17:37075699-37075925(+)$1	226	137	163	10.1591
dddd####ddddmmmmdddd333ddd	chr3:13546424-13546679(+)$1	255	217	243	14.7146
ff[ccc[eeeeemmmmeeeee]cccf	chr2:85547325-85547574(-)$1	249	114	140	9.4266
ggggccc[ddddoooooodddd]ccc	chr17:79089598-79089908(+)$1	310	107	133	11.7596
:dddd"""ddddoooooodddd22dd	chr12:7310766-7311015(+)$1	249	102	128	11.1376
dccc!!a[ddddmmmmdddd]a22cc	chr12:46752347-46752616(-)$1	269	85	111	14.2933
ebbdddd[ddddllldddddddd22b	chr11:71146099-71146343(-)$1	244	177	203	9.4631
c!!ddddeeeeemmmmeeeee333dd	chr2:97525835-97526144(-)$1	309	169	195	9.8980
dd[ccc[eeeeemmmmeeeeecccdd	chr17:1658061-1658349(+)$1	288	194	220	9.6119
d[ddddddddoooooodddd]ddddd	chr17:41167577-41167907(-)$1	330	110	136	9.7222
d"""ccc[ddddnnnnndddd]ccc3	chr10:102121275-102121505(+)$1	230	138	164	10.3734
eee$$$$$ddddmmmmdddd333eee	chr3:13546831-13547103(+)$1	272	93	119	13.6279
:eeeee!!ddddmmmmdddd333eee	chr2:242511715-242511969(+)$1	254	209	235	12.7766
!dddd"""ddddmmmmdddd22dddd	chr20:33298576-33298840(+)$1	264	146	172	13.3533
dddd####ddddmmmmdddd333ddd	chr19:19223355-19223615(+)$1	260	190	216	14.7146
[eeeee[ddddammmma]ddddeeee	chr16:2551036-2551294(+)$1	258	135	161	10.1590
ff[a[cccddddmmmmdddd]ccc]a	chr9:140167651-140167934(+)$1	283	152	178	12.5481
c####eeeee[ammmmaeeeee22cc	chr8:11702052-11702283(-)$1	231	92	118	9.0204
eeeee[ddddoooooodddd]eeeee	chr16:421160-421493(-)$1	333	134	160	9.6677
gggg####ddddooooooddddgggg	chr1:43392131-43392353(-)$1	222	114	140	12.0958
ddd$$$$$ddddmmmmdddddddd]c	chr2:120195792-120196057(+)$1	265	216	242	12.2576
c[eeeee[ddddmmmmdddd333eee	chr22:36662812-36663052(+)$1	240	8	34	13.2284
accc####ddddmmmmdddd333ccc	chr11:118916099-118916331(-)$1	232	132	158	15.1690
gggggbb[ddddmmmmdddd]bb===	chr19:2101601-2101882(-)$1	281	128	154	12.3121
:ccc####cccooooooccc4444cc	chr17:1658312-1658582(+)$1	270	48	74	9.8468
dddddd!!ddddoooooodddd22dd	chrX:70444310-70444617(+)$1	307	238	264	11.5179
ggggggddddoooooodddd]ggggg	chr1:201984861-201985168(+)$1	307	183	209	10.2194
ddd!!ccc[cccmmmmcccccc22dd	chr1:154129821-154130082(-)$1	261	212	238	9.6030
c[a[ccc[ddddmmmmddddccc]a3	chr5:149933484-149933761(+)$1	277	174	200	12.8612
eee$$$$$ddddmmmmdddd4444ee	chr22:32014716-32014967(-)$1	251	72	98	13.4220

#otherMatches

#Seq PSSM
GCAGUGUCCCACUUCCGUGGAGAGAG	chr16:46963495-46963757(+)$1	262	207	233	10.9333
ACCUGCAUAGAAUCUUUUCUUCUCAG	chr15:74005774-74006065(+)$1	291	16	42	13.2252
UUCACCCCCCAAUCUCUUGGUGGGGA	chr7:100781279-100781519(+)$1	240	186	212	13.3399
CCCCUUGGCCCCUCCAGGGGCCAUGG	chr17:79861778-79862026(-)$1	248	132	158	8.5415
auuuauuccccagcccugggaaauag	chr20:30824448-30824689(+)$1	241	167	193	13.6764
CCCUUGCCUGCCUCCUAGGCUGGAAG	chr17:37075651-37075899(+)$1	248	185	211	10.1591
UGUAAACAGAGCGUAAGGUUCACAUG	chr2:242512757-242512990(+)$1	233	148	174	12.3150
UGUACUCCUGGCUAGAAUGCUGUGGA	chr3:133539190-133539497(+)$1	307	222	248	10.7187
CGAGGGGCCCCCCAUGGGGGCUGUGG	chr16:27472128-27472384(-)$1	256	141	167	11.2325
UGCCAGGGGCUUGAGAAGGUUACUGA	chr10:102121792-102122017(+)$1	225	191	217	12.1950
UGGGGCAACAGGAAGGGGCCUGGGGC	chr14:21485028-21485298(-)$1	270	139	165	11.9631
UCUUCCUUGUCAGUCUUGGCCCAAAG	chr2:30382032-30382403(+)$1	371	224	250	14.7146
uuuaaccaacauuauagcauguauca	chr1:9988569-9988889(-)$1	320	254	280	10.0438
CUUUAGCCUCUGCCCCCAGUUCUGGU	chr2:231913051-231913344(+)$1	293	202	228	9.0744
UGCUCAGUUAGUUUUUAUUCCCGGGG	chr16:4506048-4506414(+)$1	366	30	56	9.4777
UUAAGGCUGCACGGUCGUGUCCUUGU	chr11:204770-205064(-)$1	294	143	169	12.3831
acaggcuugggccaccgcgcccagcc	chr7:56078806-56079117(-)$1	311	151	177	10.1257
UGAAGCCAAGCCGCAAGGUUACAAGG	chr17:80196913-80197127(+)$1	214	137	163	10.9904
UGGCCAGAGUGUCACAGGCAAAAGGC	chr9:127113617-127113868(+)$1	251	188	214	12.9711
AGAGGUCCCAGCACCGGCUGUGGCCU	chr11:71145486-71145804(-)$1	318	12	38	10.9109
CCCAGGGGCGAGUUCCUCGCUCUGGG	chr16:1374980-1375263(+)$1	283	119	145	10.5046
GGGGCAGGGCCAUCCCUGGCUGGGGC	chr3:13546140-13546397(+)$1	257	146	172	8.9988
UGGAAUCAGGAAUAUUUUCCAAAGAG	chr2:20401274-20401568(-)$1	294	190	216	12.9701
CCCUUGCCUGCCUCCUAGGCUGGAAG	chr17:37075699-37075925(+)$1	226	137	163	10.1591
UGCCCCAGAGCUGAAGAGCUAUAGGC	chr3:13546424-13546679(+)$1	255	217	243	14.7146
UUUCCUGUCCAGCUUCUUGGAAAGGA	chr2:85547325-85547574(-)$1	249	114	140	9.4266
AUCAUCUGUGCGUUCCUGUGUAGAGA	chr17:79089598-79089908(+)$1	310	107	133	11.7596
UCACUUCUGGGCUGUCAUGCUCCUGG	chr12:7310766-7311015(+)$1	249	102	128	11.1376
GAUAAUCUAUGUACAUAUAUUGUCUG	chr12:46752347-46752616(-)$1	269	85	111	14.2933
CAGGAGGAUGACCCAGUCACCUUUAC	chr11:71146099-71146343(-)$1	244	177	203	9.4631
CCUUGGCCUGGGUCCUCCUGGUGAGU	chr2:97525835-97526144(-)$1	309	169	195	9.8980
CUCGGGAGGCGAAGCGUUGUCCUCAG	chr17:1658061-1658349(+)$1	288	194	220	9.6119
GUGCUGCUUUUGUGCCAAGGUUAGCC	chr17:41167577-41167907(-)$1	330	110	136	9.7222
CAAUGCCGCAACAUAUAGUUGAGGCC	chr10:102121275-102121505(+)$1	230	138	164	10.3734
GGGGCAGGUUUUGGGGGGAGGAAUUC	chr3:13546831-13547103(+)$1	272	93	119	13.6279
CCCGAGCCUGGAGCACUCUAACCCUC	chr2:242511715-242511969(+)$1	254	209	235	12.7766
CUGCUUAGGCCUGGAAAGGUACAGUA	chr20:33298576-33298840(+)$1	264	146	172	13.3533
CAGGCUCUGCGGUCACUCGCCUCCCU	chr19:19223355-19223615(+)$1	260	190	216	14.7146
AGCUGGAGGGCCUGCUGUGCCCCCAG	chr16:2551036-2551294(+)$1	258	135	161	10.1590
CAGCAGCCUGGCCUGUGCCAUGGUGG	chr9:140167651-140167934(+)$1	283	152	178	12.5481
CCUUUGGAGAACGCCAGUCUCCCAGG	chr8:11702052-11702283(-)$1	231	92	118	9.0204
AGAGCUUCCUUGGACUGGGGUGCUCU	chr16:421160-421493(-)$1	333	134	160	9.6677
CUGGAUCUCCCCACUCUAGGGGUCAG	chr1:43392131-43392353(-)$1	222	114	140	12.0958
GGAACCAGUGGAGAUUUCCAUCCUUG	chr2:120195792-120196057(+)$1	265	216	242	12.2576
ggcgccuguaguuccagcuaacuggg	chr22:36662812-36663052(+)$1	240	8	34	13.2284
UUCCUUUCUCACCCCUGUGAUUUGGA	chr11:118916099-118916331(-)$1	232	132	158	15.1690
AAGGUCCUGACGGUUGCGUCCGGGGG	chr19:2101601-2101882(-)$1	281	128	154	12.3121
UGUGCCUUGUCACGCCAGACUUCCCA	chr17:1658312-1658582(+)$1	270	48	74	9.8468
UCCCGGGGCCUUCCUUUUGAGGAGCU	chrX:70444310-70444617(+)$1	307	238	264	11.5179
CUGGGACCCUUAGGAUGGGGCUCCCA	chr1:201984861-201985168(+)$1	307	183	209	10.2194
GCAUAAUGUCUUUAAAAAGCAUGUUG	chr1:154129821-154130082(-)$1	261	212	238	9.6030
GCCAGUAACAUGUUCCCAUGUACAGA	chr5:149933484-149933761(+)$1	277	174	200	12.8612
ACUGAACCUGCCUCAUGGCACCAGAG	chr22:32014716-32014967(-)$1	251	72	98	13.4220

#DB
((.((.((((((....)))).))..)	chr16:46963495-46963757(+)$1	1	207	233	10.9333
(((((...((((....))))...)))	chr15:74005774-74006065(+)$1	1	16	42	13.2252
(((.(((.((((....)))).)))))	chr7:100781279-100781519(+)$1	1	186	212	13.3399
)(((.(((((((....))))))).))	chr17:79861778-79862026(-)$1	1	132	158	8.5415
((((....((((....))))))))))	chr20:30824448-30824689(+)$1	1	167	193	13.6764
(((((.((.((((...)))).)))))	chr17:37075651-37075899(+)$1	1	185	211	10.1591
.(((....((((.....))))...))	chr2:242512757-242512990(+)$1	1	148	174	12.3150
((((.(((((((......)))).)))	chr3:133539190-133539497(+)$1	1	222	248	10.7187
(((((((((((((...))))....))	chr16:27472128-27472384(-)$1	1	141	167	11.2325
)(((((..((((....))))..))).	chr10:102121792-102122017(+)$1	1	191	217	12.1950
).)(((..((((......))))..))	chr14:21485028-21485298(-)$1	1	139	165	11.9631
((((....((((....))))...)))	chr2:30382032-30382403(+)$1	1	224	250	14.7146
((((.(((((((......))))....	chr1:9988569-9988889(-)$1	1	254	280	10.0438
(...((...(((....)))..)))))	chr2:231913051-231913344(+)$1	1	202	228	9.0744
(((((.(..(((....)))..).)))	chr16:4506048-4506414(+)$1	1	30	56	9.4777
...(((..((((....))))))))))	chr11:204770-205064(-)$1	1	143	169	12.3831
)))((((.((((......))))))))	chr7:56078806-56079117(-)$1	1	151	177	10.1257
)...(((.((((....))))....))	chr17:80196913-80197127(+)$1	1	137	163	10.9904
(((((....((((...))))...)))	chr9:127113617-127113868(+)$1	1	188	214	12.9711
(((((((.((((....)))).)))))	chr11:71145486-71145804(-)$1	1	12	38	10.9109
(((((((.((((...)))))))))))	chr16:1374980-1375263(+)$1	1	119	145	10.5046
)))))))(((((....)))))(((((	chr3:13546140-13546397(+)$1	1	146	172	8.9988
((...((.((((....))))...)).	chr2:20401274-20401568(-)$1	1	190	216	12.9701
(((((.((.((((...)))).)))))	chr17:37075699-37075925(+)$1	1	137	163	10.1591
((((....((((....))))...)))	chr3:13546424-13546679(+)$1	1	217	243	14.7146
((.(((.(((((....))))).))))	chr2:85547325-85547574(-)$1	1	114	140	9.4266
))))(((.((((......)))).)))	chr17:79089598-79089908(+)$1	1	107	133	11.7596
.((((...((((......))))..))	chr12:7310766-7311015(+)$1	1	102	128	11.1376
((((..(.((((....)))).)..))	chr12:46752347-46752616(-)$1	1	85	111	14.2933
(((((((.((((...))))))))..)	chr11:71146099-71146343(-)$1	1	177	203	9.4631
(..(((((((((....)))))...))	chr2:97525835-97526144(-)$1	1	169	195	9.8980
((.(((.(((((....))))))))))	chr17:1658061-1658349(+)$1	1	194	220	9.6119
(.((((((((......)))).)))))	chr17:41167577-41167907(-)$1	1	110	136	9.7222
(...(((.((((.....)))).))).	chr10:102121275-102121505(+)$1	1	138	164	10.3734
(((.....((((....))))...)))	chr3:13546831-13547103(+)$1	1	93	119	13.6279
.(((((..((((....))))...)))	chr2:242511715-242511969(+)$1	1	209	235	12.7766
.((((...((((....))))..))))	chr20:33298576-33298840(+)$1	1	146	172	13.3533
((((....((((....))))...)))	chr19:19223355-19223615(+)$1	1	190	216	14.7146
.(((((.(((((....).))))))))	chr16:2551036-2551294(+)$1	1	135	161	10.1590
((.(.(((((((....)))).))).)	chr9:140167651-140167934(+)$1	1	152	178	12.5481
(....(((((.(....))))))..))	chr8:11702052-11702283(-)$1	1	92	118	9.0204
(((((.((((......)))).)))))	chr16:421160-421493(-)$1	1	134	160	9.6677
((((....((((......))))))))	chr1:43392131-43392353(-)$1	1	114	140	12.0958
(((.....((((....)))))))).)	chr2:120195792-120196057(+)$1	1	216	242	12.2576
(.(((((.((((....))))...)))	chr22:36662812-36663052(+)$1	1	8	34	13.2284
)(((....((((....))))...)))	chr11:118916099-118916331(-)$1	1	132	158	15.1690
)))))((.((((....)))).))(((	chr19:2101601-2101882(-)$1	1	128	154	12.3121
.(((....(((......)))....))	chr17:1658312-1658582(+)$1	1	48	74	9.8468
((((((..((((......))))..))	chrX:70444310-70444617(+)$1	1	238	264	11.5179
((((((((((......)))).)))))	chr1:201984861-201985168(+)$1	1	183	209	10.2194
(((..(((.(((....))))))..))	chr1:154129821-154130082(-)$1	1	212	238	9.6030
(.(.(((.((((....))))))).).	chr5:149933484-149933761(+)$1	1	174	200	12.8612
(((.....((((....))))....))	chr22:32014716-32014967(-)$1	1	72	98	13.4220

#PSSM
d : 0.22	e : 0.15	g : 0.13	f : 0.11	c : 0.09	h : 0.05	: : 0.05	a : 0.03	[ : 0.03	B : 0.01	i : 0.01	E : 0.01	$ : 0.01	! : 0.01	
d : 0.20	e : 0.15	g : 0.13	c : 0.09	f : 0.09	h : 0.05	[ : 0.05	b : 0.03	" : 0.03	B : 0.01	i : 0.01	] : 0.01	$ : 0.01	: : 0.01	! : 0.01	# : 0.01	
c : 0.16	d : 0.16	g : 0.15	e : 0.15	[ : 0.07	h : 0.05	" : 0.05	b : 0.03	a : 0.03	i : 0.01	$ : 0.01	: : 0.01	! : 0.01	# : 0.01	
c : 0.26	d : 0.18	g : 0.13	e : 0.11	" : 0.05	$ : 0.05	[ : 0.03	h : 0.03	b : 0.01	i : 0.01	: : 0.01	a : 0.01	# : 0.01	! : 0.01	
c : 0.26	# : 0.16	d : 0.13	g : 0.09	e : 0.09	[ : 0.07	$ : 0.05	b : 0.03	! : 0.03	h : 0.01	" : 0.01	
c : 0.26	# : 0.16	[ : 0.09	g : 0.09	d : 0.09	e : 0.07	" : 0.05	b : 0.05	$ : 0.05	h : 0.01	! : 0.01	
c : 0.16	# : 0.16	d : 0.11	b : 0.09	! : 0.09	" : 0.07	g : 0.07	[ : 0.05	$ : 0.05	a : 0.03	e : 0.03	h : 0.01	
[ : 0.24	# : 0.16	! : 0.11	e : 0.09	" : 0.07	c : 0.07	d : 0.07	b : 0.05	$ : 0.05	g : 0.03	
d : 0.73	e : 0.09	[ : 0.05	g : 0.03	" : 0.01	! : 0.01	# : 0.01	c : 0.01	
d : 0.81	e : 0.09	c : 0.07	g : 0.01	
d : 0.75	c : 0.07	e : 0.07	o : 0.05	g : 0.01	[ : 0.01	
d : 0.73	e : 0.07	o : 0.07	c : 0.05	a : 0.03	g : 0.01	
m : 0.62	o : 0.22	d : 0.07	n : 0.03	l : 0.03	
m : 0.62	o : 0.22	l : 0.11	n : 0.03	
m : 0.62	o : 0.22	l : 0.11	n : 0.03	
m : 0.62	o : 0.22	l : 0.07	n : 0.03	d : 0.03	
d : 0.60	o : 0.16	e : 0.07	c : 0.05	n : 0.03	a : 0.03	g : 0.01	
d : 0.64	o : 0.15	e : 0.09	c : 0.07	g : 0.01	] : 0.01	
d : 0.81	e : 0.09	c : 0.07	g : 0.01	
d : 0.79	e : 0.09	g : 0.03	2 : 0.03	c : 0.03	
d : 0.24	] : 0.20	3 : 0.18	e : 0.09	4 : 0.07	2 : 0.07	c : 0.05	g : 0.03	i : 0.01	
3 : 0.22	d : 0.22	c : 0.11	b : 0.09	g : 0.07	4 : 0.07	2 : 0.03	a : 0.03	] : 0.03	e : 0.03	i : 0.01	h : 0.01	
3 : 0.22	c : 0.15	2 : 0.11	b : 0.09	g : 0.09	d : 0.09	4 : 0.07	] : 0.05	e : 0.03	i : 0.01	> : 0.01	h : 0.01	
c : 0.26	2 : 0.15	d : 0.15	e : 0.11	4 : 0.07	g : 0.07	] : 0.03	3 : 0.03	i : 0.01	> : 0.01	h : 0.01	b : 0.01	= : 0.01	
c : 0.33	d : 0.22	e : 0.13	g : 0.11	2 : 0.03	] : 0.03	i : 0.01	> : 0.01	h : 0.01	b : 0.01	= : 0.01	a : 0.01	
c : 0.30	d : 0.22	e : 0.13	g : 0.11	b : 0.03	3 : 0.03	i : 0.01	] : 0.01	> : 0.01	h : 0.01	4 : 0.01	f : 0.01	a : 0.01	= : 0.01	

#score	610.4275277331017
#seq	53
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF047PZR_NOL12_transcript_m1_run1.txt

#BEAR
dddd[ggggggg"""bbnnnnnbb333ggggggg]ddd	chr8:144940432-144940706(-)$1	274	156	194	14.1749
fffff[bb[bb"""cccmmmmccc4444bb]bbfffff	chr8:27463815-27464078(-)$1	263	84	122	10.8185
[dddd[eeeee"""cccooooooccc333eeeee22dd	chr9:116997787-116998016(+)$1	229	60	98	12.4488
####dddd[bb"""bboooooobb]bb]dddd22ffff	chr19:45411956-45412298(+)$1	342	240	278	11.1916
ffff[a[dddd[a"""aooooooa22a]dddd]affff	chr6:144803243-144803495(+)$1	252	89	127	12.8554
ffffffccc[a[bb[bbnnnnnbb333bb]a]ccc]ff	chr17:64224097-64224346(-)$1	249	8	46	12.7667
i####ffffff[a!!bbnnnnnbb22a]ffffff4444	chr6:24357741-24358074(-)$1	333	231	269	13.5270
eeee[bb[a[a[ccc[ammmmacccaabb]eeeeefff	chr13:114843558-114843785(-)$1	227	148	186	11.0637
dd[bb!!eeeee!!cccnnnnnccceeeee]bb22ddd	chr3:186336273-186336494(+)$1	221	91	129	11.0883
$$$ccc[bb[ccc"""bbmmmmbb4444ccc]bb22cc	chr14:95058313-95058552(+)$1	239	76	114	11.6420
===========[a"""annnnna333a]==========	chr21:46907261-46907507(+)$1	246	57	95	16.9143
a[bb[dddd[ccc[cccnnnnnccccccdddd]bb]a]	chr9:117008045-117008260(+)$1	215	163	201	11.4712
ggggggg[eeeeebb[bbmmmmbb]bb]eeeee]gggg	chr1:236228189-236228456(-)$1	267	114	152	10.9858
cc!!ffffff[ddddbboooooobb]dddd]ffffffc	chr1:109642956-109643190(+)$1	234	122	160	11.2763
bdddd[ccc[eeeeeccclllccc]eeeee22ccc]dd	chr1:236228069-236228338(-)$1	269	127	165	10.6798
eeee!!eeeee[a[bboooooobb]aeeeee22eeeee	chr1:173833910-173834142(-)$1	232	38	76	12.4519
!ccc"""ffffff[ccclllccc]ffffff22ccc]ff	chr1:230846074-230846329(-)$1	255	77	115	10.6576
[ccc[bbcccccc[a[bbmmmmbb22a]ccc333ccc]	chr7:45928138-45928456(+)$1	318	83	121	12.7339
cccc!!ccc[dddd[bbmmmmbb333dddd]ccc22cc	chr3:58135484-58135721(+)$1	237	149	187	11.6529
cc"""ccc!!ccc"""cccoooooocccccc22ccc22	chr2:220435942-220436229(-)$1	287	50	88	10.7090
e:==========[ddddllldddd22==========:F	chr17:7480100-7480356(+)$1	256	79	117	10.5079
iiiiiii"""dddd[cccmmmmcccdddd]iiiiiiii	chr19:24187192-24187410(-)$1	218	72	110	11.9555
qqdddd==========oooooo==========gggggg	chr16:18480409-18480791(-)$1	382	88	126	12.6055
bb[eeeeeeeeee!!aooooooa22eeeee333eeeee	chr19:13049847-13050072(+)$1	225	119	157	12.3706
ee[dddd[bbccc[bb[ammmma333bbccc]bb]ddd	chr3:58109046-58109310(+)$1	264	151	189	10.6821
:gggggggccc!!a[bboooooobb]a]ccc22ggggg	chr5:109035342-109035586(-)$1	244	59	97	12.8963
hhccc[bb[ccccccabblllbb]a]ccc]ccc]bbcc	chr20:61460879-61461132(+)$1	253	115	153	10.5258
$$$$$eeeee"""cccooooooccc333eeeeeeeeee	chr16:71792243-71792486(-)$1	243	125	163	12.5320
iiiiiieeeee[addddllldddd]a22eeeee]iiii	chr8:144994933-144995169(-)$1	236	137	175	10.7835
c[dddd!!a[ccc[cccnnnnnccc]ccca22dddd]c	chr11:118921645-118921920(-)$1	275	138	176	12.3730
b:eeeee!!dddd!!bbnnnnnbb333dddd22eeeee	chr1:43396752-43396971(-)$1	219	22	60	11.9369
dccc[eeeeebb[a!!bblllbb]abb]eeeee22ccc	chr1:45242066-45242309(+)$1	243	126	164	10.5278
ccc!!iiiiiiiii[cccmmmmccciiiiiiiiiccc]	chr16:33965408-33965634(+)$1	226	180	218	13.3896
d[iiiiiiiii"""cccmmmmccc4444iiiiiiiii]	chr17:76968289-76968551(-)$1	262	144	182	14.5716
e[==========[a!!annnnna22a]==========]	chr19:6710630-6710890(-)$1	260	200	238	15.3831
:bbeeeee!!ccc[ccclllccc333ccc22eeeee22	chr5:40832667-40832921(-)$1	254	160	198	10.8605
=============[ccclllccc333============	chr11:75111333-75111571(+)$1	238	59	97	15.4026
ddffffffeeeee!!cccmmmmccc]eeeee]ffffff	chr14:101200761-101201013(+)$1	252	78	116	11.2643
C:gggggggiiiiiiiiimmmmiiiiiiiii333gggg	chr5:137896640-137896861(-)$1	221	162	200	11.0348
bb[ccc!!ffffffcccmmmmccc22ffffff22ccc]	chr1:31440943-31441167(-)$1	224	33	71	10.9643
""iiiiiiiii[ddddooooooddddiiiiiiiii444	chr20:61471852-61472059(+)$1	207	112	150	12.6457
gggggg####dddd[cccmmmmccc]dddd22gggggg	chr20:17602083-17602290(-)$1	207	49	87	11.6186
ff[ccc!!bb[ddddaccclllccc]a22ddddbb]cc	chr12:57592162-57592420(+)$1	258	187	225	10.0758
dd[ccc$$$$$ccc[bbnnnnnbb]ccc22ccc]dddd	chr10:73588673-73588936(-)$1	263	13	51	10.9244
[dddd####eeeee[bbnnnnnbb]eeeeeddddeeee	chr2:220404667-220404930(-)$1	263	18	56	11.0274
==========a[abboooooobb]a]a]==========	chr21:46893716-46893959(+)$1	243	35	73	13.8326
::iiiiiiiii[a[a[bbmmmmbb]aa]iiiiiiiiic	chr17:1655901-1656120(+)$1	219	45	83	12.4305
d[==========ddddnnnnndddd333==========	chr9:117015063-117015311(+)$1	248	39	77	13.1406
Egggggggffffffcccmmmmccc4444ffffff]ggg	chr9:116997779-116997987(+)$1	208	26	64	11.0861
eeee[eeeee!!bb[cccmmmmccc]bb22eeeee]ee	chr7:45928320-45928592(+)$1	272	14	52	10.5958
c!!eeeee####eeeeennnnneeeeeeeeeeccc]ee	chr12:57556588-57556830(+)$1	242	141	179	10.4445
Da[ccc!!iiiiiiiiiooooooiiiiiiiiiccc]a:	chr9:124065091-124065405(+)$1	314	240	278	11.7524
ffffffffffff!!cccnnnnnccc22ffffff:dddd	chr20:39800781-39801023(+)$1	242	191	229	10.3189
fffff[bb[ccc!!bboooooobb22cccbbffffff]	chr9:116999166-116999409(+)$1	243	129	167	11.8492
[bb[bb[ggggggg[bbnnnnnbb]ggggggg4444bb	chr20:61460706-61460909(+)$1	203	92	130	11.7607
:eeeee!!bb####cccammmma]ccc333bb]eeeee	chr16:3421875-3422123(-)$1	248	126	164	10.5385
d!!a!!eeeee[ccccccmmmmccc]ccc]eeeee444	chr19:45411737-45412018(+)$1	281	34	72	12.4853
:a!!ffffff[bb!!bboooooobb333bb]ffffff2	chr7:100285330-100285608(-)$1	278	110	148	11.5511
bb!!ffffffeeeee[annnnna]eeeee]ffffff33	chr5:138614432-138614648(+)$1	216	47	85	10.9329
fff!!iiiiiiiii!!bblllbb4444iiiiiiiii44	chr1:990102-990325(+)$1	223	114	152	13.8021

#otherMatches

#Seq PSSM
UGGUGGGCGGCGAGAUCCAGGAGAAGCUGCUGUCGGCC	chr8:144940432-144940706(-)$1	274	156	194	14.1749
CCCAGGAGUGUGCAAUGAGACCAUGAUGGCCCUCUGGG	chr8:27463815-27464078(-)$1	263	84	122	10.8185
AUUGUAACCUUCUUUGCUGGUGUGUACUUAGGGUGAAC	chr9:116997787-116998016(+)$1	229	60	98	12.4488
CCCUGGCCGGCCAGCCGCUACAGGAGCGGGCCCAGGCC	chr19:45411956-45412298(+)$1	342	240	278	11.1916
UUCUUGGAACAGAGGGCAAAAGAGGAUGUGUUGCAGAA	chr6:144803243-144803495(+)$1	252	89	127	12.8554
CAUCUGCUUUGUGCCCUCUUUCAGCCUGUCCCAAGCCA	chr17:64224097-64224346(-)$1	249	8	46	12.7667
GUCUUCCUGAAGGAGGUGACCGGCGGCGUUCAGGCACC	chr6:24357741-24358074(-)$1	333	231	269	13.5270
AUGUGGCACACACGGCGAGGCCCCGGGGCGACGUGGCC	chr13:114843558-114843785(-)$1	227	148	186	11.0637
GCACUGACUGUGUUGCUAAAGAGGCCACAGAGGCAGCC	chr3:186336273-186336494(+)$1	221	91	129	11.0883
GCAGAUGGUGCACAAAGCUGUGGUGGAGGUGGACGAGU	chr14:95058313-95058552(+)$1	239	76	114	11.6420
GAAGGGACACAGGCCCCUACGUGUCUCGUGUGUCUCUU	chr21:46907261-46907507(+)$1	246	57	95	16.9143
CUGAAUGAGUGGCUccauuuauugggcccuuacucugu	chr9:117008045-117008260(+)$1	215	163	201	11.4712
CGCGGGCGCUGCUGCUGCCGCUGCUGCUGGCGGGGCCU	chr1:236228189-236228456(-)$1	267	114	152	10.9858
CUGUGCAGCGAGGCCCCUUAGGCGGCGGCCACGCUGUG	chr1:109642956-109643190(+)$1	234	122	160	11.2763
CUGGAGCUGAGUGGGGCGCUCCGCUUCUACGACAGAUC	chr1:236228069-236228338(-)$1	269	127	165	10.6798
gauuacaggcgugagccaccaugccccgccUCAAGUCU	chr1:173833910-173834142(-)$1	232	38	76	12.4519
CCGUAUAUAUGGCAUGCACAGUGAGCUAUGGGGCGUGG	chr1:230846074-230846329(-)$1	255	77	115	10.6576
UCGGCCCCUGUCUGCUGCUCGCGCCUGGAGAUGUCAGA	chr7:45928138-45928456(+)$1	318	83	121	12.7339
AGGACCUGGAAGAUGGCACCUGCAAAGUCUCCUACUUC	chr3:58135484-58135721(+)$1	237	149	187	11.6529
CGCCAGGCUUCGGGCCCGGGAAUCGCCGCCGCCGCCGC	chr2:220435942-220436229(-)$1	287	50	88	10.7090
GUGCAGCCCUGGCAGUGUCCUACUUCCCAGGGCUGUUG	chr17:7480100-7480356(+)$1	256	79	117	10.5079
UGGGAGUCCCUCACCAAAGAACUUUGUGAAACUCUUAG	chr19:24187192-24187410(-)$1	218	72	110	11.9555
CUAUGUCCUGCAGCUCAUAGAGGGGCUGCAGGUGGUGG	chr16:18480409-18480791(-)$1	382	88	126	12.6055
GAUCGAAUCCAAACACAAGUCAGAUUUUGGCAAAUUCG	chr19:13049847-13050072(+)$1	225	119	157	12.3706
GAAGCUGUCUCGGACUCGGGAACAAAAGCCGAAGUCAG	chr3:58109046-58109310(+)$1	264	151	189	10.6821
gggcgaucuggcugcgaaaucugucaccccauugaucg	chr5:109035342-109035586(-)$1	244	59	97	12.8963
CUGGGUGAGGCCGGCCCCUCUGGAGAGCCAGGCGUCCC	chr20:61460879-61461132(+)$1	253	115	153	10.5258
AUCCAUCGGCUAAGUGUCUUGUCACAAUGCUGACACUC	chr16:71792243-71792486(-)$1	243	125	163	12.5320
UGCUGGAGAGCAGGGUCAUCGACCGCGAGCUCUACCAG	chr8:144994933-144995169(-)$1	236	137	175	10.7835
AACCUGGAUGAGAGUGGCGUGCUCAGUCUAGACAGGGU	chr11:118921645-118921920(-)$1	275	138	176	12.3730
CAAGGGGAAAGGAAAAGGAAGACUGGGUCCUGGCCCCU	chr1:43396752-43396971(-)$1	219	22	60	11.9369
UGGUUGUGGCCGUCUUGGUCACCUGUGUGCCACUUGCC	chr1:45242066-45242309(+)$1	243	126	164	10.5278
GUAGUCCCCGGGGGUGCCUCCGGGCUCCUCGGGGUGCA	chr16:33965408-33965634(+)$1	226	180	218	13.3896
GAGGAGGUGGAGGGCUUGGUGGAGAAGAUCCGCUUCCC	chr17:76968289-76968551(-)$1	262	144	182	14.5716
ACUCCGUGUGGGUGGACGUCAAGGACUCCUGCGUGGGC	chr19:6710630-6710890(-)$1	260	200	238	15.3831
AGCGCAUUGAAAUCUGUUUAACAAAAAUUAAAAUGUAU	chr5:40832667-40832921(-)$1	254	160	198	10.8605
UUAGAGCAGUUUCUUGUUUUGCAUGUGGAACUGUUUUA	chr11:75111333-75111571(+)$1	238	59	97	15.4026
GCAGGUCACCCGUCUGCCCAGCGGCUAUGGGCUGGCCU	chr14:101200761-101201013(+)$1	252	78	116	11.2643
CUAAAUAGGAUUAUCUUGGACCUAAGAUAGUGACCUUG	chr5:137896640-137896861(-)$1	221	162	200	11.0348
GAGGGGAAUGAGCAGUGCUUUCACCUUGCUUAGGCUUG	chr1:31440943-31441167(-)$1	224	33	71	10.9643
GAUCCUGGGCUUCCAGGUGCCAUUGGGGCCCAGGGGAC	chr20:61471852-61472059(+)$1	207	112	150	12.6457
AAGAACCUUUGUGUGUGGCUAACUAAACACCUGUUCUU	chr20:17602083-17602290(-)$1	207	49	87	11.6186
CAAUGGCCUGACGCUGGACUAUGUCACUGAGCGCAUCU	chr12:57592162-57592420(+)$1	258	187	225	10.0758
GAGAGGGACUAAUUCAGAGGCACUAGAUGGCCUGUCUU	chr10:73588673-73588936(-)$1	263	13	51	10.9244
UCUCACUGUGCUGCUGCCUCUAGCUGCGGCUGAGCGUG	chr2:220404667-220404930(-)$1	263	18	56	11.0274
GGGGUUGCCACUGCCACCUCAGGACCGCUGGUGACCCC	chr21:46893716-46893959(+)$1	243	35	73	13.8326
ACGUGUCCCAGGUACUGGCCAACCUGAGUUGGGACACC	chr17:1655901-1656120(+)$1	219	45	83	12.4305
ACUGAAGGAGGAAGCUUCCAUAGCUGAUUCCUCCUUUG	chr9:117015063-117015311(+)$1	248	39	77	13.1406
AGGGGGUCUGUGGGGGAGGCUUCCAGAACCCACGUGGC	chr9:116997779-116997987(+)$1	208	26	64	11.0861
GCAGUGCGCGCCCUGCUCCGCCGAGAAGCUCGCGCUCU	chr7:45928320-45928592(+)$1	272	14	52	10.5958
GACCAGGUGUUGGACGCAGACGGCGUCACUUGCUUGGG	chr12:57556588-57556830(+)$1	242	141	179	10.4445
CUGAAGUACAAGGUGGGUUGGGCCCCACCUUGCUUGAG	chr9:124065091-124065405(+)$1	314	240	278	11.7524
CCUGGUGGGUGCAAAAAGAGUAUUUAGGUAUCCCCCCA	chr20:39800781-39801023(+)$1	242	191	229	10.3189
GGGGAAGCCAGGGCCUCUGGUAAGUACCUGCUCCUCCA	chr9:116999166-116999409(+)$1	243	129	167	11.8492
CCUGGCAGGGCCUCCCUGGACGAGCGGGGUCCAAAGGC	chr20:61460706-61460909(+)$1	203	92	130	11.7607
CACCGCCUGCCCAGUGACAUAUGUUCAACAGCUGCGGU	chr16:3421875-3422123(-)$1	248	126	164	10.5385
CCGCCCUCUCGGCCGCAGGGCGCUGAUGGACGAGACCA	chr19:45411737-45412018(+)$1	281	34	72	12.4853
AGAGCUGCAGGACAAGGAGUUCGCCGCGGUGCUGCAGG	chr7:100285330-100285608(-)$1	278	110	148	11.5511
GUCAGCUAUCCAGGCUCAUGUGGUGCCUGUGAUGGUGU	chr5:138614432-138614648(+)$1	216	47	85	10.9329
GCUGCCCGUGGGCCCAGCACUGCCCAAGGCCUACGGCA	chr1:990102-990325(+)$1	223	114	152	13.8021

#DB
((((.(((((((...((.....))...))))))).)))	chr8:144940432-144940706(-)$1	1	156	194	14.1749
(((((.((.((...(((....)))....)).)))))))	chr8:27463815-27464078(-)$1	1	84	122	10.8185
.((((.(((((...(((......)))...)))))..))	chr9:116997787-116998016(+)$1	1	60	98	12.4488
....((((.((...((......)).)).))))..))))	chr19:45411956-45412298(+)$1	1	240	278	11.1916
((((.(.((((.(...(......)..).)))).)))))	chr6:144803243-144803495(+)$1	1	89	127	12.8554
(((((((((.(.((.((.....))...)).).))).))	chr17:64224097-64224346(-)$1	1	8	46	12.7667
(....((((((.(..((.....))..).))))))....	chr6:24357741-24358074(-)$1	1	231	269	13.5270
((((.((.(.(.(((.(....)))))))).))))))))	chr13:114843558-114843785(-)$1	1	148	186	11.0637
((.((..(((((..(((.....)))))))).))..)))	chr3:186336273-186336494(+)$1	1	91	129	11.0883
...(((.((.(((...((....))....))).))..))	chr14:95058313-95058552(+)$1	1	76	114	11.6420
(((((((((((.(...(.....)...).))))))))))	chr21:46907261-46907507(+)$1	1	57	95	16.9143
(.((.((((.(((.(((.....)))))))))).)).).	chr9:117008045-117008260(+)$1	1	163	201	11.4712
(((((((.(((((((.((....)).)).))))).))))	chr1:236228189-236228456(-)$1	1	114	152	10.9858
((..((((((.((((((......)).)))).)))))))	chr1:109642956-109643190(+)$1	1	122	160	11.2763
)((((.(((.((((((((...))).)))))..))).))	chr1:236228069-236228338(-)$1	1	127	165	10.6798
((((..(((((.(.((......)).))))))..)))))	chr1:173833910-173834142(-)$1	1	38	76	12.4519
.(((...((((((.(((...))).))))))..))).))	chr1:230846074-230846329(-)$1	1	77	115	10.6576
.(((.((((((((.(.((....))..).)))...))).	chr7:45928138-45928456(+)$1	1	83	121	12.7339
)(((..(((.((((.((....))...)))).)))..))	chr3:58135484-58135721(+)$1	1	149	187	11.6529
((...(((..(((...(((......))))))..)))..	chr2:220435942-220436229(-)$1	1	50	88	10.7090
).((((((((((.((((...))))..)))))))))).(	chr17:7480100-7480356(+)$1	1	79	117	10.5079
(((((((...((((.(((....))))))).))))))))	chr19:24187192-24187410(-)$1	1	72	110	11.9555
..))))((((((((((......))))))))))((((((	chr16:18480409-18480791(-)$1	1	88	126	12.6055
((.((((((((((..(......)..)))))...)))))	chr19:13049847-13050072(+)$1	1	119	157	12.3706
((.((((.(((((.((.(....)...))))).)).)))	chr3:58109046-58109310(+)$1	1	151	189	10.6821
.((((((((((..(.((......)).).)))..)))))	chr5:109035342-109035586(-)$1	1	59	97	12.8963
))(((.((.(((((((((...)).).))).))).))))	chr20:61460879-61461132(+)$1	1	115	153	10.5258
.....(((((...(((......)))...))))))))))	chr16:71792243-71792486(-)$1	1	125	163	12.5320
(((((((((((.(((((...)))).)..))))).))))	chr8:144994933-144995169(-)$1	1	137	175	10.7835
(.((((..(.(((.(((.....))).))))..)))).)	chr11:118921645-118921920(-)$1	1	138	176	12.3730
).(((((..((((..((.....))...))))..)))))	chr1:43396752-43396971(-)$1	1	22	60	11.9369
((((.(((((((.(..((...)).))).)))))..)))	chr1:45242066-45242309(+)$1	1	126	164	10.5278
(((..(((((((((.(((....))))))))))))))).	chr16:33965408-33965634(+)$1	1	180	218	13.3896
(.(((((((((...(((....)))....))))))))).	chr17:76968289-76968551(-)$1	1	144	182	14.5716
(.((((((((((.(..(.....)..).)))))))))).	chr19:6710630-6710890(-)$1	1	200	238	15.3831
.(((((((..(((.(((...)))...)))..)))))..	chr5:40832667-40832921(-)$1	1	160	198	10.8605
(((((((((((((.(((...)))...))))))))))))	chr11:75111333-75111571(+)$1	1	59	97	15.4026
))(((((((((((..(((....))).))))).))))))	chr14:101200761-101201013(+)$1	1	78	116	11.2643
).((((((((((((((((....)))))))))...))))	chr5:137896640-137896861(-)$1	1	162	200	11.0348
((.(((..(((((((((....)))..))))))..))).	chr1:31440943-31441167(-)$1	1	33	71	10.9643
..(((((((((.((((......)))))))))))))...	chr20:61471852-61472059(+)$1	1	112	150	12.6457
((((((....((((.(((....))).))))..))))))	chr20:17602083-17602290(-)$1	1	49	87	11.6186
((.(((..((.((((((((...))).)..)))))).))	chr12:57592162-57592420(+)$1	1	187	225	10.0758
((.(((.....(((.((.....)).)))..))).))))	chr10:73588673-73588936(-)$1	1	13	51	10.9244
.((((....(((((.((.....)).)))))))))))))	chr2:220404667-220404930(-)$1	1	18	56	11.0274
(((((((((((.(((......)).).).))))))))))	chr21:46893716-46893959(+)$1	1	35	73	13.8326
..(((((((((.(.(.((....)).)).)))))))))(	chr17:1655901-1656120(+)$1	1	45	83	12.4305
(.((((((((((((((.....))))...))))))))))	chr9:117015063-117015311(+)$1	1	39	77	13.1406
(((((((((((((((((....)))....)))))).)))	chr9:116997779-116997987(+)$1	1	26	64	11.0861
((((.(((((..((.(((....))).))..))))).))	chr7:45928320-45928592(+)$1	1	14	52	10.5958
(..(((((....(((((.....))))))))))))).))	chr12:57556588-57556830(+)$1	1	141	179	10.4445
)(.(((..(((((((((......)))))))))))).).	chr9:124065091-124065405(+)$1	1	240	278	11.7524
))))))((((((..(((.....)))..)))))).((((	chr20:39800781-39801023(+)$1	1	191	229	10.3189
(((((.((.(((..((......))..))))))))))).	chr9:116999166-116999409(+)$1	1	129	167	11.8492
.((.((.(((((((.((.....)).)))))))....))	chr20:61460706-61460909(+)$1	1	92	130	11.7607
.(((((..((....((((....).)))...)).)))))	chr16:3421875-3422123(-)$1	1	126	164	10.5385
(..(..(((((.((((((....))).))).)))))...	chr19:45411737-45412018(+)$1	1	34	72	12.4853
.(..((((((.((..((......))...)).)))))).	chr7:100285330-100285608(-)$1	1	110	148	11.5511
((..(((((((((((.(.....).))))).))))))..	chr5:138614432-138614648(+)$1	1	47	85	10.9329
(((..(((((((((..((...))....)))))))))..	chr1:990102-990325(+)$1	1	114	152	13.8021

#PSSM
d : 0.13	f : 0.11	e : 0.09	c : 0.09	b : 0.08	: : 0.08	[ : 0.06	i : 0.05	= : 0.05	$ : 0.03	g : 0.03	# : 0.01	a : 0.01	! : 0.01	q : 0.01	h : 0.01	C : 0.01	" : 0.01	E : 0.01	D : 0.01	
d : 0.11	f : 0.11	c : 0.11	e : 0.08	[ : 0.08	b : 0.08	g : 0.06	: : 0.06	= : 0.05	# : 0.03	$ : 0.03	i : 0.03	! : 0.03	a : 0.03	q : 0.01	h : 0.01	" : 0.01	
f : 0.11	[ : 0.11	d : 0.09	= : 0.09	c : 0.09	e : 0.08	g : 0.08	! : 0.08	i : 0.08	b : 0.05	# : 0.03	$ : 0.03	" : 0.01	
c : 0.16	e : 0.13	d : 0.11	f : 0.09	= : 0.09	g : 0.08	! : 0.08	i : 0.08	# : 0.03	b : 0.03	" : 0.01	$ : 0.01	[ : 0.01	a : 0.01	
f : 0.13	[ : 0.11	d : 0.11	c : 0.09	= : 0.09	g : 0.08	! : 0.08	i : 0.08	e : 0.08	b : 0.03	" : 0.03	# : 0.01	$ : 0.01	
e : 0.13	f : 0.11	i : 0.11	g : 0.09	c : 0.09	= : 0.09	[ : 0.08	d : 0.08	! : 0.06	b : 0.05	a : 0.01	" : 0.01	# : 0.01	
e : 0.18	= : 0.11	f : 0.09	! : 0.09	i : 0.09	g : 0.08	b : 0.08	c : 0.06	d : 0.05	[ : 0.05	# : 0.03	" : 0.01	$ : 0.01	
e : 0.18	f : 0.11	= : 0.11	! : 0.09	g : 0.08	c : 0.08	i : 0.08	b : 0.06	d : 0.05	[ : 0.05	# : 0.03	" : 0.01	$ : 0.01	
e : 0.18	f : 0.13	= : 0.11	i : 0.09	c : 0.08	[ : 0.06	b : 0.06	g : 0.05	! : 0.05	# : 0.05	d : 0.03	a : 0.03	" : 0.01	$ : 0.01	
e : 0.19	f : 0.13	[ : 0.11	= : 0.11	i : 0.11	b : 0.08	c : 0.06	g : 0.03	d : 0.03	! : 0.03	# : 0.03	" : 0.01	$ : 0.01	
e : 0.18	c : 0.16	i : 0.11	= : 0.09	d : 0.08	f : 0.08	b : 0.05	a : 0.05	[ : 0.05	g : 0.03	# : 0.03	" : 0.01	$ : 0.01	! : 0.01	
[ : 0.18	c : 0.16	e : 0.11	d : 0.09	" : 0.08	= : 0.08	f : 0.06	i : 0.06	g : 0.03	! : 0.03	b : 0.03	# : 0.03	
c : 0.18	d : 0.13	a : 0.11	e : 0.11	" : 0.09	! : 0.06	i : 0.06	b : 0.05	f : 0.05	[ : 0.05	= : 0.03	g : 0.01	# : 0.01	
" : 0.15	[ : 0.15	d : 0.15	! : 0.13	c : 0.08	b : 0.06	e : 0.06	i : 0.06	a : 0.05	f : 0.03	= : 0.01	g : 0.01	# : 0.01	
c : 0.28	[ : 0.16	! : 0.13	b : 0.09	d : 0.09	" : 0.08	e : 0.05	a : 0.03	i : 0.03	= : 0.01	
c : 0.35	b : 0.24	[ : 0.08	" : 0.06	d : 0.06	a : 0.05	! : 0.05	i : 0.03	= : 0.01	o : 0.01	e : 0.01	
c : 0.36	b : 0.30	o : 0.13	a : 0.08	d : 0.03	i : 0.03	[ : 0.01	n : 0.01	e : 0.01	
n : 0.26	o : 0.23	c : 0.15	b : 0.11	m : 0.09	l : 0.08	a : 0.03	i : 0.01	
m : 0.31	n : 0.26	o : 0.23	l : 0.15	c : 0.03	
m : 0.31	n : 0.26	o : 0.24	l : 0.16	
m : 0.31	n : 0.26	o : 0.24	l : 0.08	c : 0.05	d : 0.03	
n : 0.24	o : 0.23	m : 0.21	c : 0.13	b : 0.08	d : 0.05	a : 0.01	l : 0.01	
c : 0.35	b : 0.31	o : 0.11	a : 0.09	d : 0.06	= : 0.01	i : 0.01	e : 0.01	
c : 0.31	b : 0.28	] : 0.09	3 : 0.08	d : 0.06	2 : 0.03	i : 0.03	a : 0.01	o : 0.01	= : 0.01	e : 0.01	4 : 0.01	
c : 0.24	] : 0.15	3 : 0.13	2 : 0.13	4 : 0.08	b : 0.05	a : 0.05	i : 0.03	d : 0.03	e : 0.03	f : 0.01	o : 0.01	= : 0.01	
3 : 0.18	] : 0.16	2 : 0.11	e : 0.09	4 : 0.08	c : 0.08	a : 0.08	b : 0.05	i : 0.05	d : 0.03	f : 0.01	= : 0.01	g : 0.01	
a : 0.15	c : 0.15	e : 0.13	3 : 0.11	4 : 0.08	b : 0.08	d : 0.06	i : 0.06	= : 0.05	f : 0.03	2 : 0.03	] : 0.01	g : 0.01	
] : 0.16	e : 0.13	c : 0.13	3 : 0.08	d : 0.08	i : 0.08	4 : 0.06	b : 0.06	= : 0.06	f : 0.05	g : 0.03	2 : 0.03	
e : 0.19	c : 0.16	d : 0.13	= : 0.11	i : 0.11	f : 0.08	b : 0.06	2 : 0.05	g : 0.03	3 : 0.03	
e : 0.19	d : 0.13	= : 0.11	i : 0.11	] : 0.09	f : 0.08	c : 0.08	b : 0.05	2 : 0.05	g : 0.03	a : 0.01	3 : 0.01	
e : 0.18	i : 0.13	c : 0.11	= : 0.11	d : 0.09	] : 0.08	f : 0.08	2 : 0.08	g : 0.03	b : 0.03	a : 0.01	3 : 0.01	
e : 0.16	f : 0.13	2 : 0.13	= : 0.11	i : 0.11	d : 0.08	] : 0.06	b : 0.05	3 : 0.05	c : 0.05	g : 0.03	
e : 0.15	c : 0.13	f : 0.13	2 : 0.09	= : 0.09	i : 0.09	b : 0.06	g : 0.05	] : 0.05	3 : 0.05	d : 0.05	4 : 0.01	
e : 0.16	f : 0.13	c : 0.11	= : 0.09	i : 0.09	g : 0.06	2 : 0.06	b : 0.06	] : 0.06	3 : 0.03	d : 0.03	a : 0.01	: : 0.01	4 : 0.01	
e : 0.16	c : 0.15	f : 0.13	= : 0.09	i : 0.09	2 : 0.08	g : 0.08	] : 0.05	b : 0.05	d : 0.05	4 : 0.03	
f : 0.15	] : 0.13	e : 0.11	d : 0.09	= : 0.09	g : 0.09	c : 0.08	i : 0.08	4 : 0.06	2 : 0.05	b : 0.01	
f : 0.16	c : 0.13	e : 0.13	d : 0.11	g : 0.09	= : 0.08	4 : 0.06	i : 0.06	a : 0.03	2 : 0.03	: : 0.01	] : 0.01	b : 0.01	3 : 0.01	
c : 0.13	e : 0.13	d : 0.11	f : 0.11	] : 0.11	g : 0.09	4 : 0.06	= : 0.06	2 : 0.05	i : 0.03	F : 0.01	: : 0.01	b : 0.01	3 : 0.01	

#score	716.4935464051752
#seq	60
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_transcript_m2_run2.txt

#BEAR
e[bb[bbqqqqqqqqbb]bbe	chr1:228333111-228333409(+)$1	298	48	69	13.4654
!ffffffqqqqqqqqffffff	chr1:43167585-43167854(+)$1	269	164	185	14.5463
=======qqqqqqqq======	chr9:100689276-100689565(-)$1	289	172	193	15.5519
ffffcccqqqqqqqqccc444	chr18:19203622-19203877(+)$1	255	32	53	15.1272
gggggggqqqqqqqqgggggg	chr11:5289678-5289906(-)$1	228	68	89	15.2846
ccc[cccqqqqqqqqccc]cc	chr2:98263478-98263704(+)$1	226	158	179	15.2802
ffff[bbqqqqqqqqbb22ff	chrX:154006968-154007185(-)$1	217	111	132	13.8900
c[ccc[aqqqqqqqqaccc]c	chr3:133307563-133307789(+)$1	226	149	170	15.0543
=======qqqqqqqq======	chr21:40547298-40547602(-)$1	304	204	225	15.5519
:ffffffqqqqqqqqffffff	chrX:48830103-48830382(-)$1	279	123	144	13.5288
"ffffffqqqqqqqqffffff	chr11:5291012-5291219(-)$1	207	164	185	14.4744
"""ddddqqqqqqqqdddd22	chr22:30165563-30165860(+)$1	297	151	172	14.1880
gggggggqqqqqqqqgggggg	chr17:79991721-79991993(+)$1	272	6	27	15.2846
eee[cccqqqqqqqqccceee	chr6:43193429-43193683(-)$1	254	82	103	15.0713
cc[ddddqqqqqqqqdddd]c	chr12:6679306-6679562(-)$1	256	187	208	14.4364
ddd!!bbqqqqqqqqbb22dd	chr1:245022537-245022777(-)$1	240	3	24	13.2509
iiiiiiiqqqqqqqqiiiiii	chr1:33476057-33476315(-)$1	258	142	163	15.1558
d[eeeeeqqqqqqqqeeeeed	chr3:23958560-23958765(+)$1	205	92	113	14.5447
ccc[cccqqqqqqqqccc]cc	chr4:57325490-57325754(+)$1	264	232	253	15.2802
ffeeeeeqqqqqqqqeeeee7	chr12:74934806-74935068(+)$1	262	208	229	14.0451
cc[ddddqqqqqqqqdddd]c	chr22:38349636-38349908(+)$1	272	78	99	14.4364
ccc[cccqqqqqqqqccc]cc	chr9:140476526-140476835(-)$1	309	187	208	15.2802
ffeeeeeqqqqqqqqeeeee:	chr12:72003723-72003974(-)$1	251	121	142	13.5734
d[bbcccqqqqqqqqccc]bb	chr8:21939704-21939993(+)$1	289	23	44	14.3227
!bb[cccqqqqqqqqccc]bb	chr11:5290763-5290973(-)$1	210	51	72	14.3574
gggggggqqqqqqqqgggggg	chr11:824987-825292(+)$1	305	178	199	15.2846
ff[ddddqqqqqqqqdddd22	chr14:70238506-70238774(+)$1	268	87	108	14.1125
gg[ddddqqqqqqqqddddgg	chr12:123745579-123745874(-)$1	295	55	76	14.5916
""eeeeeqqqqqqqqeeeee5	chr19:896756-897010(-)$1	254	180	201	13.9951
gggggggqqqqqqqqgggggg	chr20:2451232-2451532(-)$1	300	241	262	15.2846
a[eeeeeqqqqqqqqeeeee]	chr2:97560073-97560314(-)$1	241	174	195	14.9043
effffffqqqqqqqqffffff	chr20:3018759-3019145(+)$1	386	84	105	14.4037
eeeddddqqqqqqqqdddd]e	chrX:49370495-49370791(+)$1	296	244	265	14.1370
!!eeeeeqqqqqqqqeeeee2	chr19:1434936-1435175(+)$1	239	133	154	14.7637
dddd[bbqqqqqqqqbb]ddd	chr7:100486062-100486351(+)$1	289	85	106	13.5251
d!!ddddqqqqqqqqdddd]d	chr3:128888951-128889204(-)$1	253	74	95	14.3449
h!!ddddqqqqqqqqdddd22	chr7:140086474-140086687(-)$1	213	26	47	14.1148
=======qqqqqqqq======	chr17:4848940-4849218(-)$1	278	237	258	15.5519
eeeecccqqqqqqqqccc]ee	chr17:49232995-49233241(+)$1	246	123	144	15.0691
d[eeeeeqqqqqqqqeeeee3	chr1:1717342-1717586(-)$1	244	176	197	14.8919
gggggggqqqqqqqqgggggg	chr11:118279747-118279997(+)$1	250	170	191	15.2846
ggggg[aqqqqqqqqa]gggg	chr2:232577061-232577327(+)$1	266	43	64	15.0101
e[bb[bbqqqqqqqqbb]bb]	chr8:101715338-101715565(-)$1	227	52	73	13.6611
a[bb[bbqqqqqqqqbb]bb]	chr5:1814367-1814669(+)$1	302	16	37	13.6921
d####bbqqqqqqqqbb4444	chr17:46972970-46973294(+)$1	324	272	293	14.0971
eeeecccqqqqqqqqccc]ee	chr10:106026907-106027153(+)$1	246	36	57	15.0691
:ffffffqqqqqqqqffffff	chr11:5289657-5289863(-)$1	206	111	132	13.5288
daa[cccqqqqqqqqccc]a]	chr12:53689527-53689771(+)$1	244	21	42	15.2112
fffddddqqqqqqqqdddd]f	chr2:55199261-55199509(-)$1	248	39	60	14.2639
eeeee[aqqqqqqqqa]eeee	chr16:31202716-31202973(+)$1	257	177	198	14.3518
gg!!cccqqqqqqqqcccggg	chr19:46112604-46112874(-)$1	270	79	100	15.5772
g"""cccqqqqqqqqccc333	chr19:12907718-12907962(-)$1	244	183	204	15.6342
ggg:cccqqqqqqqqccceee	chr19:19637989-19638204(+)$1	215	99	120	14.2428
ffff[bbqqqqqqqqbb]fff	chr12:99477521-99477752(-)$1	231	182	203	14.2948
:ffffffqqqqqqqqffffff	chr1:155707940-155708235(+)$1	295	232	253	13.5288
iiiiiiiqqqqqqqqiiiiii	chr18:43664458-43664707(-)$1	249	94	115	15.1558
=[eeeeeqqqqqqqqeeeee]	chr3:50367382-50367735(-)$1	353	302	323	14.9704
:ffffffqqqqqqqqffffff	chr16:447773-448033(+)$1	260	116	137	13.5288
:ffffffqqqqqqqqffffff	chr19:38746677-38746956(-)$1	279	255	276	13.5288
gggggggqqqqqqqqgggggg	chr21:40551760-40552013(-)$1	253	217	238	15.2846
ee!!cccqqqqqqqqccc333	chr1:40026438-40026669(-)$1	231	22	43	15.5379
dddd[bbqqqqqqqqbb]ddd	chr2:65496331-65496623(+)$1	292	0	21	13.5251
ggg[cccqqqqqqqqccc]gg	chr6:34555453-34555708(-)$1	255	128	149	15.6578
ffeeeeeqqqqqqqqeeeee4	chr3:13358780-13359070(-)$1	290	231	252	14.6019
"""ddddqqqqqqqqdddd33	chr19:9939416-9939651(+)$1	235	59	80	14.6741
#ccc[bbqqqqqqqqbb]ccc	chr6:33384289-33384526(-)$1	237	210	231	14.2423
gggggggqqqqqqqqgggggg	chr22:38352675-38352951(+)$1	276	220	241	15.2846
c[eeeeeqqqqqqqqeeeeec	chr17:38974488-38974774(-)$1	286	110	131	14.8046
$$$$cccqqqqqqqqccc444	chr19:59061536-59061750(+)$1	214	167	188	14.4089
gggggggqqqqqqqqgggggg	chr5:1815880-1816131(+)$1	251	180	201	15.2846

#otherMatches

#Seq PSSM
GAUGGGGACUAGAGGCCGCAC	chr1:228333111-228333409(+)$1	298	48	69	13.4654
CCAGAUAAAUAGAACUAUCUG	chr1:43167585-43167854(+)$1	269	164	185	14.5463
GAGGACUGGAUAAUUGGUUUU	chr9:100689276-100689565(-)$1	289	172	193	15.5519
UAGUUGCCUUAACUUGUAUCA	chr18:19203622-19203877(+)$1	255	32	53	15.1272
UUGCCUAACAGCUCCUGGGUA	chr11:5289678-5289906(-)$1	228	68	89	15.2846
AACUUAUGGCCUUGGAUGUGU	chr2:98263478-98263704(+)$1	226	158	179	15.2802
AAAGCGUUUUUAACUGCAACU	chrX:154006968-154007185(-)$1	217	111	132	13.8900
UUUUUGCUUUGACUUGAAAUA	chr3:133307563-133307789(+)$1	226	149	170	15.0543
AUUGUAAAAAAUUAAUUGUAG	chr21:40547298-40547602(-)$1	304	204	225	15.5519
UGCAUUUGGGAUUGGGGAUGC	chrX:48830103-48830382(-)$1	279	123	144	13.5288
AGAGGCUGGAGGUGAAGCCUU	chr11:5291012-5291219(-)$1	207	164	185	14.4744
GGAGGCCCCCAUCCAGGCCAG	chr22:30165563-30165860(+)$1	297	151	172	14.1880
AGGGCUGGCGGGGAGCAGCCC	chr17:79991721-79991993(+)$1	272	6	27	15.2846
GGGGAGCAGCAGAUGGCUCUC	chr6:43193429-43193683(-)$1	254	82	103	15.0713
GCGGCUCUAGCCACUGAGCGG	chr12:6679306-6679562(-)$1	256	187	208	14.4364
CUAGAGGAAGAUUAGCCCGUG	chr1:245022537-245022777(-)$1	240	3	24	13.2509
GAAAUAGACACAAUAUUAUUU	chr1:33476057-33476315(-)$1	258	142	163	15.1558
GGCAGCCAUCAGGUAGGCUGC	chr3:23958560-23958765(+)$1	205	92	113	14.5447
UUUUUAGGGGAAAAACUACAA	chr4:57325490-57325754(+)$1	264	232	253	15.2802
GCCCAGGGACCACUGCCUGGC	chr12:74934806-74935068(+)$1	262	208	229	14.0451
GCCGCGCGAGUCGUAGUGUCG	chr22:38349636-38349908(+)$1	272	78	99	14.4364
ACGUGACUAAAAACUGUCCUG	chr9:140476526-140476835(-)$1	309	187	208	15.2802
ACUCUCUGAUGCCUGAGAGAU	chr12:72003723-72003974(-)$1	251	121	142	13.5734
CUGGCACAUUUUGGAGUGUCC	chr8:21939704-21939993(+)$1	289	23	44	14.3227
UGGUGUCAUUUCAUAGACUCC	chr11:5290763-5290973(-)$1	210	51	72	14.3574
GUGAAGAAUUAUUUAUUUUCG	chr11:824987-825292(+)$1	305	178	199	15.2846
UUUGCUUGUACAUAAAGGCUU	chr14:70238506-70238774(+)$1	268	87	108	14.1125
AAUGUAACUUCUUUUUUGCUU	chr12:123745579-123745874(-)$1	295	55	76	14.5916
CUGCGUGUCCUCCCCCACGCC	chr19:896756-897010(-)$1	254	180	201	13.9951
GUUGUGGAGUGGGAACCGCGA	chr20:2451232-2451532(-)$1	300	241	262	15.2846
aggccuggguaugugugggug	chr2:97560073-97560314(-)$1	241	174	195	14.9043
AAUAUACCCCAAAUUGUGUAU	chr20:3018759-3019145(+)$1	386	84	105	14.4037
uucuagcuauuugaugcugug	chrX:49370495-49370791(+)$1	296	244	265	14.1370
CUGAGGUUUUUAAAUAUUUCU	chr19:1434936-1435175(+)$1	239	133	154	14.7637
CAGACGAUGUUGAUUUCUUUU	chr7:100486062-100486351(+)$1	289	85	106	13.5251
UUUAACUACAAAAAAAGUUUA	chr3:128888951-128889204(-)$1	253	74	95	14.3449
cugacuuuggaagcuagguau	chr7:140086474-140086687(-)$1	213	26	47	14.1148
UUUUUUUUUCUGAAUAAAAAA	chr17:4848940-4849218(-)$1	278	237	258	15.5519
UUGUUGGUCUGAAAUUCAUGC	chr17:49232995-49233241(+)$1	246	123	144	15.0691
UGUUCUUUUUCUUUUAAGAAA	chr1:1717342-1717586(-)$1	244	176	197	14.8919
AGUGUUUUCUCCAUCAGAUAC	chr11:118279747-118279997(+)$1	250	170	191	15.2846
CCACAGUAGGAGGGAAGUGUG	chr2:232577061-232577327(+)$1	266	43	64	15.0101
UAUGGAAAAAAAACAUUGCaa	chr8:101715338-101715565(-)$1	227	52	73	13.6611
GGUGGGUUAAAUUGUAUGUAG	chr5:1814367-1814669(+)$1	302	16	37	13.6921
GUGCCUCUGUCCUUUGACCUU	chr17:46972970-46973294(+)$1	324	272	293	14.0971
GGGAGACUCUGUGAUGUCAUC	chr10:106026907-106027153(+)$1	246	36	57	15.0691
UGGCAGAAGCUGGUGUCUGCU	chr11:5289657-5289863(-)$1	206	111	132	13.5288
ACCUGCCCCCUCCCCGGCCGC	chr12:53689527-53689771(+)$1	244	21	42	15.2112
GCAAAUAUCAAACAUUGUUAU	chr2:55199261-55199509(-)$1	248	39	60	14.2639
UGGUUCCCAUUAAAAGUGACC	chr16:31202716-31202973(+)$1	257	177	198	14.3518
GACUGACAUACAGAAGUCUCU	chr19:46112604-46112874(-)$1	270	79	100	15.5772
AAACUCCACAGUAUGGGACCC	chr19:12907718-12907962(-)$1	244	183	204	15.6342
GGCGCCUACAAAUCGAGGACU	chr19:19637989-19638204(+)$1	215	99	120	14.2428
ACCAUAUAAAAACAAAUUUGG	chr12:99477521-99477752(-)$1	231	182	203	14.2948
GGACCUGCAUUAAAAUGGGUU	chr1:155707940-155708235(+)$1	295	232	253	13.5288
GGCUAUUGAAGAACAAGUGGC	chr18:43664458-43664707(-)$1	249	94	115	15.1558
GGGUCUGUGUGAAUGUGGGCA	chr3:50367382-50367735(-)$1	353	302	323	14.9704
UCGGCUCUGAAAAGUGAGCCG	chr16:447773-448033(+)$1	260	116	137	13.5288
GGUGCACACUCGCUGGUGCAC	chr19:38746677-38746956(-)$1	279	255	276	13.5288
UUAAGGGUUCGAUGUCUUUUA	chr21:40551760-40552013(-)$1	253	217	238	15.2846
AUUUUUCAAUUAUACGAAUAU	chr1:40026438-40026669(-)$1	231	22	43	15.5379
GUGGCGCUUUCAACUGUACUG	chr2:65496331-65496623(+)$1	292	0	21	13.5251
GUGGAUGGAUGUGCACGUGUG	chr6:34555453-34555708(-)$1	255	128	149	15.6578
UUGAGCAGUUAGAAGUGCUCU	chr3:13358780-13359070(-)$1	290	231	252	14.6019
UCCUUAGCCUUAUCUCUGAAA	chr19:9939416-9939651(+)$1	235	59	80	14.6741
UUGCCUGUUUUUUGUCAUGUA	chr6:33384289-33384526(-)$1	237	210	231	14.2423
AAUCGUCUGACAGGUGAUGAU	chr22:38352675-38352951(+)$1	276	220	241	15.2846
UAUGGUUGAAUCAGAAACCAA	chr17:38974488-38974774(-)$1	286	110	131	14.8046
ACUAGGACCCAUUCAUCCACU	chr19:59061536-59061750(+)$1	214	167	188	14.4089
UCCUGUGAGCAUUUCCGCGGG	chr5:1815880-1816131(+)$1	251	180	201	15.2846

#DB
(.((.((........)).)))	chr1:228333111-228333409(+)$1	1	48	69	13.4654
.((((((........))))))	chr1:43167585-43167854(+)$1	1	164	185	14.5463
(((((((........))))))	chr9:100689276-100689565(-)$1	1	172	193	15.5519
(((((((........)))...	chr18:19203622-19203877(+)$1	1	32	53	15.1272
(((((((........))))))	chr11:5289678-5289906(-)$1	1	68	89	15.2846
(((.(((........))).))	chr2:98263478-98263704(+)$1	1	158	179	15.2802
((((.((........))..))	chrX:154006968-154007185(-)$1	1	111	132	13.8900
(.(((.(........)))).)	chr3:133307563-133307789(+)$1	1	149	170	15.0543
(((((((........))))))	chr21:40547298-40547602(-)$1	1	204	225	15.5519
.((((((........))))))	chrX:48830103-48830382(-)$1	1	123	144	13.5288
.((((((........))))))	chr11:5291012-5291219(-)$1	1	164	185	14.4744
...((((........))))..	chr22:30165563-30165860(+)$1	1	151	172	14.1880
(((((((........))))))	chr17:79991721-79991993(+)$1	1	6	27	15.2846
(((.(((........))))))	chr6:43193429-43193683(-)$1	1	82	103	15.0713
((.((((........)))).)	chr12:6679306-6679562(-)$1	1	187	208	14.4364
(((..((........))..))	chr1:245022537-245022777(-)$1	1	3	24	13.2509
(((((((........))))))	chr1:33476057-33476315(-)$1	1	142	163	15.1558
(.(((((........))))))	chr3:23958560-23958765(+)$1	1	92	113	14.5447
(((.(((........))).))	chr4:57325490-57325754(+)$1	1	232	253	15.2802
(((((((........))))).	chr12:74934806-74935068(+)$1	1	208	229	14.0451
((.((((........)))).)	chr22:38349636-38349908(+)$1	1	78	99	14.4364
(((.(((........))).))	chr9:140476526-140476835(-)$1	1	187	208	15.2802
))(((((........))))).	chr12:72003723-72003974(-)$1	1	121	142	13.5734
(.(((((........))).))	chr8:21939704-21939993(+)$1	1	23	44	14.3227
.((.(((........))).))	chr11:5290763-5290973(-)$1	1	51	72	14.3574
(((((((........))))))	chr11:824987-825292(+)$1	1	178	199	15.2846
((.((((........))))..	chr14:70238506-70238774(+)$1	1	87	108	14.1125
((.((((........))))))	chr12:123745579-123745874(-)$1	1	55	76	14.5916
..(((((........))))).	chr19:896756-897010(-)$1	1	180	201	13.9951
(((((((........))))))	chr20:2451232-2451532(-)$1	1	241	262	15.2846
(.(((((........))))).	chr2:97560073-97560314(-)$1	1	174	195	14.9043
)((((((........))))))	chr20:3018759-3019145(+)$1	1	84	105	14.4037
(((((((........)))).)	chrX:49370495-49370791(+)$1	1	244	265	14.1370
..(((((........))))).	chr19:1434936-1435175(+)$1	1	133	154	14.7637
((((.((........)).)))	chr7:100486062-100486351(+)$1	1	85	106	13.5251
(..((((........)))).)	chr3:128888951-128889204(-)$1	1	74	95	14.3449
(..((((........))))..	chr7:140086474-140086687(-)$1	1	26	47	14.1148
(((((((........))))))	chr17:4848940-4849218(-)$1	1	237	258	15.5519
(((((((........))).))	chr17:49232995-49233241(+)$1	1	123	144	15.0691
(.(((((........))))).	chr1:1717342-1717586(-)$1	1	176	197	14.8919
(((((((........))))))	chr11:118279747-118279997(+)$1	1	170	191	15.2846
(((((.(........).))))	chr2:232577061-232577327(+)$1	1	43	64	15.0101
(.((.((........)).)).	chr8:101715338-101715565(-)$1	1	52	73	13.6611
(.((.((........)).)).	chr5:1814367-1814669(+)$1	1	16	37	13.6921
(....((........))....	chr17:46972970-46973294(+)$1	1	272	293	14.0971
(((((((........))).))	chr10:106026907-106027153(+)$1	1	36	57	15.0691
.((((((........))))))	chr11:5289657-5289863(-)$1	1	111	132	13.5288
(((.(((........))).).	chr12:53689527-53689771(+)$1	1	21	42	15.2112
(((((((........)))).)	chr2:55199261-55199509(-)$1	1	39	60	14.2639
(((((.(........).))))	chr16:31202716-31202973(+)$1	1	177	198	14.3518
((..(((........))))))	chr19:46112604-46112874(-)$1	1	79	100	15.5772
(...(((........)))...	chr19:12907718-12907962(-)$1	1	183	204	15.6342
))).(((........)))(((	chr19:19637989-19638204(+)$1	1	99	120	14.2428
((((.((........)).)))	chr12:99477521-99477752(-)$1	1	182	203	14.2948
.((((((........))))))	chr1:155707940-155708235(+)$1	1	232	253	13.5288
(((((((........))))))	chr18:43664458-43664707(-)$1	1	94	115	15.1558
(.(((((........))))).	chr3:50367382-50367735(-)$1	1	302	323	14.9704
.((((((........))))))	chr16:447773-448033(+)$1	1	116	137	13.5288
.((((((........))))))	chr19:38746677-38746956(-)$1	1	255	276	13.5288
(((((((........))))))	chr21:40551760-40552013(-)$1	1	217	238	15.2846
((..(((........)))...	chr1:40026438-40026669(-)$1	1	22	43	15.5379
((((.((........)).)))	chr2:65496331-65496623(+)$1	1	0	21	13.5251
(((.(((........))).))	chr6:34555453-34555708(-)$1	1	128	149	15.6578
(((((((........))))).	chr3:13358780-13359070(-)$1	1	231	252	14.6019
...((((........))))..	chr19:9939416-9939651(+)$1	1	59	80	14.6741
.(((.((........)).)))	chr6:33384289-33384526(-)$1	1	210	231	14.2423
(((((((........))))))	chr22:38352675-38352951(+)$1	1	220	241	15.2846
(.(((((........))))))	chr17:38974488-38974774(-)$1	1	110	131	14.8046
....(((........)))...	chr19:59061536-59061750(+)$1	1	167	188	14.4089
(((((((........))))))	chr5:1815880-1816131(+)$1	1	180	201	15.2846

#PSSM
g : 0.20	e : 0.12	d : 0.12	f : 0.11	c : 0.10	: : 0.07	= : 0.05	" : 0.05	! : 0.04	i : 0.02	a : 0.02	h : 0.01	# : 0.01	$ : 0.01	
f : 0.22	g : 0.18	[ : 0.14	c : 0.08	e : 0.08	" : 0.05	= : 0.04	d : 0.04	! : 0.04	i : 0.02	b : 0.01	# : 0.01	a : 0.01	$ : 0.01	
e : 0.21	f : 0.17	g : 0.15	b : 0.07	c : 0.07	[ : 0.05	! : 0.05	= : 0.04	" : 0.04	d : 0.04	i : 0.02	# : 0.01	a : 0.01	$ : 0.01	
e : 0.18	d : 0.17	f : 0.15	g : 0.12	[ : 0.10	b : 0.05	= : 0.04	! : 0.04	c : 0.02	i : 0.02	# : 0.01	" : 0.01	: : 0.01	$ : 0.01	
c : 0.24	e : 0.15	d : 0.14	g : 0.12	[ : 0.11	f : 0.11	= : 0.04	i : 0.02	! : 0.01	# : 0.01	
c : 0.22	b : 0.14	d : 0.14	e : 0.14	f : 0.11	g : 0.11	= : 0.04	[ : 0.04	i : 0.02	
c : 0.22	b : 0.14	d : 0.14	e : 0.14	f : 0.11	g : 0.11	= : 0.04	a : 0.04	i : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.22	b : 0.14	d : 0.14	e : 0.14	f : 0.11	g : 0.11	= : 0.04	a : 0.04	i : 0.02	
c : 0.24	b : 0.14	d : 0.14	e : 0.14	f : 0.11	g : 0.11	= : 0.04	i : 0.02	] : 0.02	
c : 0.24	e : 0.15	d : 0.14	g : 0.12	f : 0.11	] : 0.10	= : 0.04	2 : 0.02	i : 0.02	4 : 0.01	
e : 0.18	d : 0.17	g : 0.14	f : 0.12	] : 0.12	b : 0.04	= : 0.04	4 : 0.04	2 : 0.02	c : 0.02	i : 0.02	3 : 0.02	
e : 0.21	g : 0.17	f : 0.14	] : 0.08	b : 0.07	c : 0.05	= : 0.04	4 : 0.04	2 : 0.04	d : 0.04	3 : 0.04	i : 0.02	a : 0.01	
g : 0.17	f : 0.15	c : 0.11	e : 0.10	d : 0.07	] : 0.07	4 : 0.05	2 : 0.05	3 : 0.05	= : 0.04	i : 0.02	b : 0.02	7 : 0.01	: : 0.01	5 : 0.01	

#score	1021.8979864348199
#seq	70
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_CDS_m3_run1.txt

#BEAR
:eeeeellleeeee	chr14:54902719-54903023(-)$1	304	264	278	9.0202
eeeeemmmmeeeee	chr2:61344320-61344598(+)$1	278	67	81	10.6246
eeeeemmmmeeeee	chr1:45270746-45271052(+)$1	306	216	230	10.6246
eeeeeooooooeee	chrX:41204246-41204537(+)$1	291	29	43	9.0085
[eeeeellleeeee	chr13:37584652-37584969(-)$1	317	132	146	9.8772
eeeeellleeeeee	chr10:115674496-115674857(+)$1	361	121	135	9.6012
eeeeemmmmeeeee	chr7:91747819-91748068(-)$1	249	100	114	10.6246
:eeeeellleeeee	chr22:40676962-40677329(+)$1	367	233	247	9.0202
eeeeemmmmeeeee	chrM:10974-11179(+)$1	205	180	194	10.6246
[eeeeellleeeee	chrM:12301-12505(+)$1	204	2	16	9.8772
eeeeeooooooeee	chr12:56717544-56717877(-)$1	333	96	110	9.0085
eeeeennnnneeee	chr6:30611227-30611517(+)$1	290	151	165	9.4386
eeeeemmmmeeeee	chrM:13723-13927(+)$1	204	78	92	10.6246
eeeeemmmmeeeee	chr19:57903977-57904315(+)$1	338	138	152	10.6246
[eeeeellleeeee	chrM:12275-12488(+)$1	213	28	42	9.8772
eeeeemmmmeeeee	chr19:49481290-49481656(-)$1	366	293	307	10.6246
eeeeemmmmeeeee	chr12:27113258-27113549(+)$1	291	217	231	10.6246
eeeeemmmmeeeee	chr12:122973909-122974183(-)$1	274	20	34	10.6246
[eeeeellleeeee	chrM:12288-12501(+)$1	213	15	29	9.8772
eeeeennnnneeee	chr1:154131378-154131683(-)$1	305	268	282	9.4386
eeeeemmmmeeeee	chr3:196803403-196803682(-)$1	279	70	84	10.6246
eeeeemmmmeeeee	chrM:13687-13896(+)$1	209	114	128	10.6246
eeeeennnnneeee	chr6:30611193-30611427(+)$1	234	185	199	9.4386
eeeeeooooooeee	chr14:100604074-100604392(+)$1	318	105	119	9.0085
eeeeeooooooeee	chrM:9247-9451(+)$1	204	116	130	9.0085
eeeeemmmmeeeee	chr1:28793098-28793361(+)$1	263	187	201	10.6246
eeeeemmmmeeeee	chr11:57583262-57583522(+)$1	260	231	245	10.6246
eeeeemmmmeeeee	chrM:13672-13879(+)$1	207	129	143	10.6246
eeeeemmmmeeeee	chr2:55254496-55254784(-)$1	288	188	202	10.6246
:eeeeellleeeee	chr7:158545387-158545701(-)$1	314	210	224	9.0202
eeeeemmmmeeeee	chr6:87968214-87968511(+)$1	297	69	83	10.6246
eeeeemmmmeeeee	chr12:110457022-110457278(+)$1	256	45	59	10.6246
:eeeeellleeeee	chr11:18022210-18022505(-)$1	295	90	104	9.0202
eeeeemmmmeeeee	chrM:13727-13929(+)$1	202	74	88	10.6246
eeeeennnnneeee	chr1:171558415-171558858(+)$1	443	415	429	9.4386
eeeeennnnneeee	chr6:36067881-36068105(+)$1	224	100	114	9.4386
eeeeemmmmeeeee	chr13:76101855-76102111(-)$1	256	70	84	10.6246
eeeeemmmmeeeee	chr9:95155235-95155593(+)$1	358	200	214	10.6246
eeeeemmmmeeeee	chr10:24834819-24835125(+)$1	306	19	33	10.6246
eeeeennnnneeee	chr12:32893065-32893347(-)$1	282	259	273	9.4386
$eeeeellleeeee	chr22:19958732-19959024(-)$1	292	27	41	9.5356
eeeeemmmmeeeee	chrM:13703-13912(+)$1	209	98	112	10.6246
:eeeeellleeeee	chr9:19336651-19336913(+)$1	262	232	246	9.0202
eeeeennnnneeee	chr17:48504120-48504442(+)$1	322	14	28	9.4386
eeeeennnnneeee	chr19:4423152-4423441(+)$1	289	33	47	9.4386
eeeeeooooooeee	chr1:63010527-63010797(-)$1	270	141	155	9.0085
eeeeemmmmeeeee	chr10:24834765-24835019(+)$1	254	73	87	10.6246
eeeeennnnneeee	chr1:982520-982808(+)$1	288	261	275	9.4386
eeeeemmmmeeeee	chrM:13638-13840(+)$1	202	163	177	10.6246
eeeeemmmmeeeee	chrM:13613-13834(+)$1	221	188	202	10.6246
Feeeeellleeeee	chr6:142704829-142705102(+)$1	273	117	131	9.5392
eeeeeooooooeee	chr11:102318889-102319162(-)$1	273	192	206	9.0085
eeeeennnnneeee	chr2:186655989-186656234(-)$1	245	158	172	9.4386
[eeeeellleeeee	chr6:138763113-138763362(-)$1	249	99	113	9.8772
eeeeemmmmeeeee	chr9:15478433-15478758(-)$1	325	300	314	10.6246
eeeeemmmmeeeee	chrM:10967-11174(+)$1	207	187	201	10.6246
eeeeemmmmeeeee	chrM:13751-13965(+)$1	214	50	64	10.6246
eeeeennnnneeee	chr1:22416289-22416587(+)$1	298	133	147	9.4386
eeeeemmmmeeeee	chr2:27728402-27728723(+)$1	321	262	276	10.6246
eeeeemmmmeeeee	chr11:57583325-57583593(+)$1	268	168	182	10.6246
eeeeemmmmeeeee	chrM:13697-13903(+)$1	206	104	118	10.6246
+eeeeellleeeee	chr4:186598538-186598812(-)$1	274	127	141	9.2421
:eeeeellleeeee	chr15:63361885-63362262(+)$1	377	43	57	9.0202
eeeeemmmmeeeee	chrM:13736-13951(+)$1	215	65	79	10.6246
eeeeennnnneeee	chr5:137504255-137504602(-)$1	347	142	156	9.4386
:eeeeellleeeee	chr2:153499873-153500121(+)$1	248	201	215	9.0202

#otherMatches

#Seq PSSM
AUUCAUUUCAUGGG	chr14:54902719-54903023(-)$1	304	264	278	9.0202
agugucuucacacu	chr2:61344320-61344598(+)$1	278	67	81	10.6246
AGGUAGAGGUACCU	chr1:45270746-45271052(+)$1	306	216	230	10.6246
CUGUAAAAUUAUGC	chrX:41204246-41204537(+)$1	291	29	43	9.0085
UUCAAACUUUUUGA	chr13:37584652-37584969(-)$1	317	132	146	9.8772
AAGUCAGAGGCUUU	chr10:115674496-115674857(+)$1	361	121	135	9.6012
UGUUAUUUAUAACA	chr7:91747819-91748068(-)$1	249	100	114	10.6246
CCAGCUACAAGCUG	chr22:40676962-40677329(+)$1	367	233	247	9.0202
UCAUCACCCGAUGA	chrM:10974-11179(+)$1	205	180	194	10.6246
CCCAAAAAUUUUGG	chrM:12301-12505(+)$1	204	2	16	9.8772
UCCUGUAAUAUCAG	chr12:56717544-56717877(-)$1	333	96	110	9.0085
AGGGAACCCCUCCC	chr6:30611227-30611517(+)$1	290	151	165	9.4386
ACAGCCCUCGCUGU	chrM:13723-13927(+)$1	204	78	92	10.6246
auuugaagucagau	chr19:57903977-57904315(+)$1	338	138	152	10.6246
CCCAAAAAUUUUGG	chrM:12275-12488(+)$1	213	28	42	9.8772
CUUACUGGUGUGAG	chr19:49481290-49481656(-)$1	366	293	307	10.6246
AAGGAUUCUUCCUU	chr12:27113258-27113549(+)$1	291	217	231	10.6246
GCUUCAGAAGAAGC	chr12:122973909-122974183(-)$1	274	20	34	10.6246
CCCAAAAAUUUUGG	chrM:12288-12501(+)$1	213	15	29	9.8772
UGAGCUUACUGCUC	chr1:154131378-154131683(-)$1	305	268	282	9.4386
UUUGUACACACAGA	chr3:196803403-196803682(-)$1	279	70	84	10.6246
ACAGCCCUCGCUGU	chrM:13687-13896(+)$1	209	114	128	10.6246
AGGGAACCCCUCCC	chr6:30611193-30611427(+)$1	234	185	199	9.4386
GGGGCUCCUCUGUC	chr14:100604074-100604392(+)$1	318	105	119	9.0085
ACCAUAUACCAAUG	chrM:9247-9451(+)$1	204	116	130	9.0085
AAGUCUUUAGGCUU	chr1:28793098-28793361(+)$1	263	187	201	10.6246
CAAGAUUGUUCUUG	chr11:57583262-57583522(+)$1	260	231	245	10.6246
ACAGCCCUCGCUGU	chrM:13672-13879(+)$1	207	129	143	10.6246
AGGUAACACUAUUU	chr2:55254496-55254784(-)$1	288	188	202	10.6246
CAGUUCAGAGAGCU	chr7:158545387-158545701(-)$1	314	210	224	9.0202
ACUUGGUAACAAGU	chr6:87968214-87968511(+)$1	297	69	83	10.6246
UGAGCGGCGGCUCA	chr12:110457022-110457278(+)$1	256	45	59	10.6246
uguaaaacauuuac	chr11:18022210-18022505(-)$1	295	90	104	9.0202
ACAGCCCUCGCUGU	chrM:13727-13929(+)$1	202	74	88	10.6246
AGGCAUUCAUUGUC	chr1:171558415-171558858(+)$1	443	415	429	9.4386
CAGAUUAUGCGUCU	chr6:36067881-36068105(+)$1	224	100	114	9.4386
uuuuguaaccaaaa	chr13:76101855-76102111(-)$1	256	70	84	10.6246
UCCUUUGGUAAGGG	chr9:95155235-95155593(+)$1	358	200	214	10.6246
UCCCAGCUCUGGGA	chr10:24834819-24835125(+)$1	306	19	33	10.6246
CUUCAGCUUUUGAA	chr12:32893065-32893347(-)$1	282	259	273	9.4386
UGCGCCCUUGGUGC	chr22:19958732-19959024(-)$1	292	27	41	9.5356
ACAGCCCUCGCUGU	chrM:13703-13912(+)$1	209	98	112	10.6246
CCUUUUUCAAAAAG	chr9:19336651-19336913(+)$1	262	232	246	9.0202
UGGGGAUCAGCCCC	chr17:48504120-48504442(+)$1	322	14	28	9.4386
UGUAAAAGCCUUAU	chr19:4423152-4423441(+)$1	289	33	47	9.4386
UGGGGAUCCAACCC	chr1:63010527-63010797(-)$1	270	141	155	9.0085
UCCCAGCUCUGGGA	chr10:24834765-24835019(+)$1	254	73	87	10.6246
CUGACCCCAAGUCA	chr1:982520-982808(+)$1	288	261	275	9.4386
ACAGCCCUCGCUGU	chrM:13638-13840(+)$1	202	163	177	10.6246
ACAGCCCUCGCUGU	chrM:13613-13834(+)$1	221	188	202	10.6246
CCUGUUACUAACAG	chr6:142704829-142705102(+)$1	273	117	131	9.5392
CAAGGUACGUUUCU	chr11:102318889-102319162(-)$1	273	192	206	9.0085
AAGAUUUUUUAUCU	chr2:186655989-186656234(-)$1	245	158	172	9.4386
ACUCUACAUUAGGG	chr6:138763113-138763362(-)$1	249	99	113	9.8772
UGUAUAAUUAUGCA	chr9:15478433-15478758(-)$1	325	300	314	10.6246
UCAUCACCCGAUGA	chrM:10967-11174(+)$1	207	187	201	10.6246
ACAGCCCUCGCUGU	chrM:13751-13965(+)$1	214	50	64	10.6246
CUCUGUCUUGUAGA	chr1:22416289-22416587(+)$1	298	133	147	9.4386
CCAUAAGACUGUGG	chr2:27728402-27728723(+)$1	321	262	276	10.6246
CAAGAUUGUUCUUG	chr11:57583325-57583593(+)$1	268	168	182	10.6246
ACAGCCCUCGCUGU	chrM:13697-13903(+)$1	206	104	118	10.6246
CAGUACAGAGUACU	chr4:186598538-186598812(-)$1	274	127	141	9.2421
AGAGUAAACUGCUC	chr15:63361885-63362262(+)$1	377	43	57	9.0202
ACAGCCCUCGCUGU	chrM:13736-13951(+)$1	215	65	79	10.6246
GUUAGACACACUAA	chr5:137504255-137504602(-)$1	347	142	156	9.4386
UGAUGUCUUAUGUC	chr2:153499873-153500121(+)$1	248	201	215	9.0202

#DB
.(((((...)))))	chr14:54902719-54903023(-)$1	1	264	278	9.0202
(((((....)))))	chr2:61344320-61344598(+)$1	1	67	81	10.6246
(((((....)))))	chr1:45270746-45271052(+)$1	1	216	230	10.6246
(((((......)))	chrX:41204246-41204537(+)$1	1	29	43	9.0085
.(((((...)))))	chr13:37584652-37584969(-)$1	1	132	146	9.8772
(((((...))))))	chr10:115674496-115674857(+)$1	1	121	135	9.6012
(((((....)))))	chr7:91747819-91748068(-)$1	1	100	114	10.6246
.(((((...)))))	chr22:40676962-40677329(+)$1	1	233	247	9.0202
(((((....)))))	chrM:10974-11179(+)$1	1	180	194	10.6246
.(((((...)))))	chrM:12301-12505(+)$1	1	2	16	9.8772
(((((......)))	chr12:56717544-56717877(-)$1	1	96	110	9.0085
(((((.....))))	chr6:30611227-30611517(+)$1	1	151	165	9.4386
(((((....)))))	chrM:13723-13927(+)$1	1	78	92	10.6246
(((((....)))))	chr19:57903977-57904315(+)$1	1	138	152	10.6246
.(((((...)))))	chrM:12275-12488(+)$1	1	28	42	9.8772
(((((....)))))	chr19:49481290-49481656(-)$1	1	293	307	10.6246
(((((....)))))	chr12:27113258-27113549(+)$1	1	217	231	10.6246
(((((....)))))	chr12:122973909-122974183(-)$1	1	20	34	10.6246
.(((((...)))))	chrM:12288-12501(+)$1	1	15	29	9.8772
(((((.....))))	chr1:154131378-154131683(-)$1	1	268	282	9.4386
(((((....)))))	chr3:196803403-196803682(-)$1	1	70	84	10.6246
(((((....)))))	chrM:13687-13896(+)$1	1	114	128	10.6246
(((((.....))))	chr6:30611193-30611427(+)$1	1	185	199	9.4386
(((((......)))	chr14:100604074-100604392(+)$1	1	105	119	9.0085
(((((......)))	chrM:9247-9451(+)$1	1	116	130	9.0085
(((((....)))))	chr1:28793098-28793361(+)$1	1	187	201	10.6246
(((((....)))))	chr11:57583262-57583522(+)$1	1	231	245	10.6246
(((((....)))))	chrM:13672-13879(+)$1	1	129	143	10.6246
(((((....)))))	chr2:55254496-55254784(-)$1	1	188	202	10.6246
.(((((...)))))	chr7:158545387-158545701(-)$1	1	210	224	9.0202
(((((....)))))	chr6:87968214-87968511(+)$1	1	69	83	10.6246
(((((....)))))	chr12:110457022-110457278(+)$1	1	45	59	10.6246
.(((((...)))))	chr11:18022210-18022505(-)$1	1	90	104	9.0202
(((((....)))))	chrM:13727-13929(+)$1	1	74	88	10.6246
(((((.....))))	chr1:171558415-171558858(+)$1	1	415	429	9.4386
(((((.....))))	chr6:36067881-36068105(+)$1	1	100	114	9.4386
(((((....)))))	chr13:76101855-76102111(-)$1	1	70	84	10.6246
(((((....)))))	chr9:95155235-95155593(+)$1	1	200	214	10.6246
(((((....)))))	chr10:24834819-24835125(+)$1	1	19	33	10.6246
(((((.....))))	chr12:32893065-32893347(-)$1	1	259	273	9.4386
.(((((...)))))	chr22:19958732-19959024(-)$1	1	27	41	9.5356
(((((....)))))	chrM:13703-13912(+)$1	1	98	112	10.6246
.(((((...)))))	chr9:19336651-19336913(+)$1	1	232	246	9.0202
(((((.....))))	chr17:48504120-48504442(+)$1	1	14	28	9.4386
(((((.....))))	chr19:4423152-4423441(+)$1	1	33	47	9.4386
(((((......)))	chr1:63010527-63010797(-)$1	1	141	155	9.0085
(((((....)))))	chr10:24834765-24835019(+)$1	1	73	87	10.6246
(((((.....))))	chr1:982520-982808(+)$1	1	261	275	9.4386
(((((....)))))	chrM:13638-13840(+)$1	1	163	177	10.6246
(((((....)))))	chrM:13613-13834(+)$1	1	188	202	10.6246
((((((...)))))	chr6:142704829-142705102(+)$1	1	117	131	9.5392
(((((......)))	chr11:102318889-102319162(-)$1	1	192	206	9.0085
(((((.....))))	chr2:186655989-186656234(-)$1	1	158	172	9.4386
.(((((...)))))	chr6:138763113-138763362(-)$1	1	99	113	9.8772
(((((....)))))	chr9:15478433-15478758(-)$1	1	300	314	10.6246
(((((....)))))	chrM:10967-11174(+)$1	1	187	201	10.6246
(((((....)))))	chrM:13751-13965(+)$1	1	50	64	10.6246
(((((.....))))	chr1:22416289-22416587(+)$1	1	133	147	9.4386
(((((....)))))	chr2:27728402-27728723(+)$1	1	262	276	10.6246
(((((....)))))	chr11:57583325-57583593(+)$1	1	168	182	10.6246
(((((....)))))	chrM:13697-13903(+)$1	1	104	118	10.6246
.(((((...)))))	chr4:186598538-186598812(-)$1	1	127	141	9.2421
.(((((...)))))	chr15:63361885-63362262(+)$1	1	43	57	9.0202
(((((....)))))	chrM:13736-13951(+)$1	1	65	79	10.6246
(((((.....))))	chr5:137504255-137504602(-)$1	1	142	156	9.4386
.(((((...)))))	chr2:153499873-153500121(+)$1	1	201	215	9.0202

#PSSM
e : 0.77	: : 0.10	[ : 0.07	$ : 0.01	F : 0.01	+ : 0.01	
e : 0.99	
e : 0.99	
e : 0.99	
e : 0.99	
m : 0.48	e : 0.22	n : 0.18	o : 0.09	l : 0.01	
m : 0.48	l : 0.24	n : 0.18	o : 0.09	
m : 0.48	l : 0.24	n : 0.18	o : 0.09	
m : 0.48	l : 0.22	n : 0.18	o : 0.09	e : 0.01	
e : 0.72	n : 0.18	o : 0.09	
e : 0.90	o : 0.09	
e : 0.99	
e : 0.99	
e : 0.99	

#score	657.7509223248603
#seq	66
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF017IRY_EFTUD2_transcript_m2_run1.txt

#BEAR
[eeeeeooooooeeeee	chr21:47980669-47980924(+)$1	255	185	202	10.2725
a[eeeeellleeeeea]	chr17:74380110-74380347(+)$1	237	30	47	10.0699
[eeeeemmmmeeeee22	chr20:3782184-3782487(+)$1	303	17	34	12.2305
[eeeeennnnneeeee]	chr18:55711985-55712221(+)$1	236	212	229	9.7153
[eeeeellleeeee444	chr21:35446223-35446473(+)$1	250	149	166	10.1441
deeeeemmmmeeeee33	chr6:11213333-11213589(-)$1	256	211	228	12.1273
!eeeeeooooooeeeee	chr9:139607172-139607473(+)$1	301	60	77	10.2783
"eeeeeooooooeeeee	chr17:80019742-80020016(-)$1	274	164	181	10.2761
ceeeeemmmmeeeeebb	chr20:60928002-60928279(-)$1	277	74	91	11.3619
#eeeeeooooooeeeee	chr17:73567202-73567445(+)$1	243	28	45	10.2662
%eeeeemmmmeeeeecc	chr2:242610220-242610461(+)$1	241	52	69	11.6161
a[eeeeellleeeee]a	chr1:1275102-1275357(-)$1	255	206	223	10.3086
:eeeeemmmmeeeeedd	chr1:41235023-41235281(+)$1	258	47	64	11.0146
deeeeeooooooeeeee	chr3:184081269-184081556(+)$1	287	246	263	9.7223
:eeeeemmmmeeeee::	chr17:49197260-49197514(-)$1	254	172	189	9.9453
a[eeeeellleeeee]a	chr19:4400061-4400389(-)$1	328	15	32	10.3086
[eeeeemmmmeeeeea]	chr16:88789460-88789718(-)$1	258	146	163	12.2999
ceeeeemmmmeeeee]c	chr16:88714294-88714543(-)$1	249	68	85	12.1103
:eeeeeooooooeeeee	chr1:1247756-1248045(-)$1	289	174	191	9.4000
[eeeeemmmmeeeee]d	chr1:155106167-155106475(+)$1	308	152	169	12.3293
feeeeemmmmeeeeebb	chr2:74717217-74717511(+)$1	294	83	100	11.1616
!eeeeennnnneeeee2	chr1:206905201-206905458(+)$1	257	23	40	9.6001
ceeeeemmmmeeeee]c	chr1:110301180-110301494(-)$1	314	271	288	12.1103
"eeeeemmmmeeeee]g	chr15:41828407-41828692(-)$1	285	94	111	12.4353
#eeeeemmmmeeeee44	chr11:65313782-65314046(-)$1	264	235	252	12.4994
[eeeeemmmmeeeee33	chr5:132159092-132159329(-)$1	237	46	63	12.6774
eeeeeammmma]eeeee	chrX:23801744-23802002(+)$1	258	227	244	10.1180
:eeeeemmmmeeeeecc	chr20:62668284-62668545(+)$1	261	175	192	11.2591
[eeeeemmmmeeeee]f	chr5:179126022-179126304(+)$1	282	239	256	12.3621
:eeeeemmmmeeeeeee	chr19:51848605-51848869(-)$1	264	83	100	11.3255
:eeeeemmmmeeeeecc	chr17:79994423-79994665(-)$1	242	156	173	11.2591
beeeeemmmmeeeee]b	chr3:48670154-48670394(-)$1	240	17	34	11.7536
[eeeeennnnneeeee]	chr2:242577215-242577474(+)$1	259	228	245	9.7153
:eeeeemmmmeeeeecc	chr17:79994478-79994726(-)$1	248	217	234	11.2591
:eeeeemmmmeeeee:e	chr2:220043710-220043940(+)$1	230	26	43	10.6649
"eeeeemmmmeeeee33	chr8:42010574-42010849(+)$1	275	148	165	12.6811
[eeeeeooooooeeeee	chr17:80190206-80190456(+)$1	250	171	188	10.2725
eeeeeeooooooeeeee	chr10:46951786-46952024(+)$1	238	156	173	9.7447
[eeeeellleeeee22f	chr20:5099950-5100214(-)$1	264	30	47	9.5651
#eeeeemmmmeeeee33	chr12:120582216-120582461(-)$1	245	30	47	12.6712
[eeeeennnnneeeee]	chr4:39459812-39460086(-)$1	274	76	93	9.7153
ceeeeemmmmeeeee33	chr17:48942951-48943168(-)$1	217	119	136	12.3250
:eeeeemmmmeeeee::	chr9:136645677-136645946(-)$1	269	241	258	9.9453
[eeeeemmmmeeeee]a	chr2:9695377-9695656(-)$1	279	114	131	12.5386
a[eeeeellleeeee]a	chr20:60889412-60889645(-)$1	233	1	18	10.3086
eeee[ammmma]eeeee	chr16:28834862-28835122(+)$1	260	209	226	9.4837
!eeeeemmmmeeeee22	chr19:36302926-36303142(-)$1	216	51	68	12.2363
c[eeeeellleeeeecc	chr6:119215625-119215901(+)$1	276	89	106	9.7401
heeeeemmmmeeeeebb	chr1:154940198-154940436(-)$1	238	140	157	11.0779
[eeeeemmmmeeeee]a	chr15:102029217-102029469(-)$1	252	101	118	12.5386
feeeeemmmmeeeee:C	chr22:20102586-20102844(-)$1	258	200	217	10.0168
!eeeeemmmmeeeeeff	chr16:31504364-31504635(-)$1	271	166	183	11.9693
[eeeeemmmmeeeee]a	chr1:40771306-40771554(-)$1	248	191	208	12.5386
%eeeeeooooooeeeee	chr2:242501812-242502063(+)$1	251	48	65	9.7570
:eeeeemmmmeeeee:e	chr2:242499020-242499303(+)$1	283	80	97	10.6649
Ceeeeemmmmeeeeegg	chr10:21823974-21824264(+)$1	290	106	123	10.9246
"eeeeemmmmeeeee44	chr12:6646090-6646382(+)$1	292	126	143	12.5093
ceeeeemmmmeeeeeGG	chr19:623268-623559(-)$1	291	23	40	10.6557

#otherMatches

#Seq PSSM
CUGGCUACAUUGGGCCA	chr21:47980669-47980924(+)$1	255	185	202	10.2725
GCGGGCGAGACGCCCCG	chr17:74380110-74380347(+)$1	237	30	47	10.0699
GGUGGCUGGUGCCACAG	chr20:3782184-3782487(+)$1	303	17	34	12.2305
GCUUUCGGGAGGAGAGG	chr18:55711985-55712221(+)$1	236	212	229	9.7153
AGUGGAAGGUCCGCGGG	chr21:35446223-35446473(+)$1	250	149	166	10.1441
AUCAUGUUUGCAUGAUU	chr6:11213333-11213589(-)$1	256	211	228	12.1273
AGCUCCAGCCCCGGAGU	chr9:139607172-139607473(+)$1	301	60	77	10.2783
CGGUGCACGGACGCACC	chr17:80019742-80020016(-)$1	274	164	181	10.2761
UGGCAGUUCUUUGCCUG	chr20:60928002-60928279(-)$1	277	74	91	11.3619
ACCCCCUGACCUGGGGG	chr17:73567202-73567445(+)$1	243	28	45	10.2662
GGCCUGCGUCCAGGUCU	chr2:242610220-242610461(+)$1	241	52	69	11.6161
CGUGCGGGUGCUGCGGG	chr1:1275102-1275357(-)$1	255	206	223	10.3086
AGUUCACAGAUGGACAG	chr1:41235023-41235281(+)$1	258	47	64	11.0146
CGAGCUCUCUCUGGCUU	chr3:184081269-184081556(+)$1	287	246	263	9.7223
ACCCUUGGGGAGGGGGA	chr17:49197260-49197514(-)$1	254	172	189	9.9453
GGCGGCAGCAUGUCGGU	chr19:4400061-4400389(-)$1	328	15	32	10.3086
AUCCUGUGCCCAGGAGG	chr16:88789460-88789718(-)$1	258	146	163	12.2999
UGGUACUUUGGUGCCUA	chr16:88714294-88714543(-)$1	249	68	85	12.1103
UGAGGCCAAGAAGCCUC	chr1:1247756-1248045(-)$1	289	174	191	9.4000
CAGGAGGUGGCUCCUUU	chr1:155106167-155106475(+)$1	308	152	169	12.3293
GGAGGGCUGACCCUCAG	chr2:74717217-74717511(+)$1	294	83	100	11.1616
GGUCCUGAAGGAGGACA	chr1:206905201-206905458(+)$1	257	23	40	9.6001
CGCUCCCUAUGGAGCAG	chr1:110301180-110301494(-)$1	314	271	288	12.1103
AGGUAGACUUUUACCCC	chr15:41828407-41828692(-)$1	285	94	111	12.4353
UUCAUCCCCAGGUGACU	chr11:65313782-65314046(-)$1	264	235	252	12.4994
GUGGGUAGGAGCCCAGA	chr5:132159092-132159329(-)$1	237	46	63	12.6774
AGUGCCGAAAGAGCACU	chrX:23801744-23802002(+)$1	258	227	244	10.1180
CCCUGCGGGCGCAGGCC	chr20:62668284-62668545(+)$1	261	175	192	11.2591
GGCCCGAAUCCGGGCGU	chr5:179126022-179126304(+)$1	282	239	256	12.3621
UGUGAGAAGUUUCGCGU	chr19:51848605-51848869(-)$1	264	83	100	11.3255
GGGGCUUAAUAGCCCGG	chr17:79994423-79994665(-)$1	242	156	173	11.2591
AGGAUGCCCACAUCCAU	chr3:48670154-48670394(-)$1	240	17	34	11.7536
GGCCGUGGAGGGCGGCG	chr2:242577215-242577474(+)$1	259	228	245	9.7153
GGGGCUUAAUAGCCCGG	chr17:79994478-79994726(-)$1	248	217	234	11.2591
CCCUGACGUUUCAGGUG	chr2:220043710-220043940(+)$1	230	26	43	10.6649
GGCUGCGGACGCGGCGG	chr8:42010574-42010849(+)$1	275	148	165	12.6811
UGAGUCCAGGUUGACUC	chr17:80190206-80190456(+)$1	250	171	188	10.2725
CUCUCACAGGCAUGGGG	chr10:46951786-46952024(+)$1	238	156	173	9.7447
UGCACCUCCGGUGCUUG	chr20:5099950-5100214(-)$1	264	30	47	9.5651
GACCUUGGCAAGGGUAG	chr12:120582216-120582461(-)$1	245	30	47	12.6712
UGAGACUUGAUGUCUUU	chr4:39459812-39460086(-)$1	274	76	93	9.7153
CGGCUCCCAGGAGCCCG	chr17:48942951-48943168(-)$1	217	119	136	12.3250
CGGCUUGGAUGAGCCAC	chr9:136645677-136645946(-)$1	269	241	258	9.9453
GUAUUGGCGAUGGUGGC	chr2:9695377-9695656(-)$1	279	114	131	12.5386
GGAUCGCUUUGUGAUGU	chr20:60889412-60889645(-)$1	233	1	18	10.3086
UGAGGGGCCGCGCUCGG	chr16:28834862-28835122(+)$1	260	209	226	9.4837
CUGAGGCCAGCCUCAUG	chr19:36302926-36303142(-)$1	216	51	68	12.2363
GUCAGUUGCGGGCUGCA	chr6:119215625-119215901(+)$1	276	89	106	9.7401
GACAGCCUCUGCUGUGC	chr1:154940198-154940436(-)$1	238	140	157	11.0779
GGGGACUGGGGUCCCGC	chr15:102029217-102029469(-)$1	252	101	118	12.5386
UGCCCAGUUGUGGGCAC	chr22:20102586-20102844(-)$1	258	200	217	10.0168
CCUGGAUCAUUUCAGUU	chr16:31504364-31504635(-)$1	271	166	183	11.9693
AAGGGUUCCUGCUUUAG	chr1:40771306-40771554(-)$1	248	191	208	12.5386
CUGGCCGUGGCUGGCCA	chr2:242501812-242502063(+)$1	251	48	65	9.7570
CGGUGCUGCUGCGCCUG	chr2:242499020-242499303(+)$1	283	80	97	10.6649
CGCCCUUCCCGGGGUUC	chr10:21823974-21824264(+)$1	290	106	123	10.9246
CCCUGCAAAGGCAGGAC	chr12:6646090-6646382(+)$1	292	126	143	12.5093
AGCUCCACAUGGAGCUG	chr19:623268-623559(-)$1	291	23	40	10.6557

#DB
.(((((......)))))	chr21:47980669-47980924(+)$1	1	185	202	10.2725
(.(((((...)))))).	chr17:74380110-74380347(+)$1	1	30	47	10.0699
.(((((....)))))..	chr20:3782184-3782487(+)$1	1	17	34	12.2305
.(((((.....))))).	chr18:55711985-55712221(+)$1	1	212	229	9.7153
.(((((...)))))...	chr21:35446223-35446473(+)$1	1	149	166	10.1441
((((((....)))))..	chr6:11213333-11213589(-)$1	1	211	228	12.1273
.(((((......)))))	chr9:139607172-139607473(+)$1	1	60	77	10.2783
.(((((......)))))	chr17:80019742-80020016(-)$1	1	164	181	10.2761
)(((((....)))))((	chr20:60928002-60928279(-)$1	1	74	91	11.3619
.(((((......)))))	chr17:73567202-73567445(+)$1	1	28	45	10.2662
.(((((....)))))))	chr2:242610220-242610461(+)$1	1	52	69	11.6161
(.(((((...))))).)	chr1:1275102-1275357(-)$1	1	206	223	10.3086
.(((((....)))))((	chr1:41235023-41235281(+)$1	1	47	64	11.0146
)(((((......)))))	chr3:184081269-184081556(+)$1	1	246	263	9.7223
.(((((....)))))..	chr17:49197260-49197514(-)$1	1	172	189	9.9453
(.(((((...))))).)	chr19:4400061-4400389(-)$1	1	15	32	10.3086
.(((((....)))))).	chr16:88789460-88789718(-)$1	1	146	163	12.2999
((((((....))))).)	chr16:88714294-88714543(-)$1	1	68	85	12.1103
.(((((......)))))	chr1:1247756-1248045(-)$1	1	174	191	9.4000
.(((((....))))).)	chr1:155106167-155106475(+)$1	1	152	169	12.3293
)(((((....)))))((	chr2:74717217-74717511(+)$1	1	83	100	11.1616
.(((((.....))))).	chr1:206905201-206905458(+)$1	1	23	40	9.6001
((((((....))))).)	chr1:110301180-110301494(-)$1	1	271	288	12.1103
.(((((....))))).)	chr15:41828407-41828692(-)$1	1	94	111	12.4353
.(((((....)))))..	chr11:65313782-65314046(-)$1	1	235	252	12.4994
.(((((....)))))..	chr5:132159092-132159329(-)$1	1	46	63	12.6774
((((((....).)))))	chrX:23801744-23802002(+)$1	1	227	244	10.1180
.(((((....)))))((	chr20:62668284-62668545(+)$1	1	175	192	11.2591
.(((((....))))).)	chr5:179126022-179126304(+)$1	1	239	256	12.3621
.(((((....)))))((	chr19:51848605-51848869(-)$1	1	83	100	11.3255
.(((((....)))))((	chr17:79994423-79994665(-)$1	1	156	173	11.2591
((((((....))))).)	chr3:48670154-48670394(-)$1	1	17	34	11.7536
.(((((.....))))).	chr2:242577215-242577474(+)$1	1	228	245	9.7153
.(((((....)))))((	chr17:79994478-79994726(-)$1	1	217	234	11.2591
.(((((....))))).(	chr2:220043710-220043940(+)$1	1	26	43	10.6649
.(((((....)))))..	chr8:42010574-42010849(+)$1	1	148	165	12.6811
.(((((......)))))	chr17:80190206-80190456(+)$1	1	171	188	10.2725
)(((((......)))))	chr10:46951786-46952024(+)$1	1	156	173	9.7447
.(((((...)))))..)	chr20:5099950-5100214(-)$1	1	30	47	9.5651
.(((((....)))))..	chr12:120582216-120582461(-)$1	1	30	47	12.6712
.(((((.....))))).	chr4:39459812-39460086(-)$1	1	76	93	9.7153
((((((....)))))..	chr17:48942951-48943168(-)$1	1	119	136	12.3250
.(((((....)))))..	chr9:136645677-136645946(-)$1	1	241	258	9.9453
.(((((....))))).)	chr2:9695377-9695656(-)$1	1	114	131	12.5386
(.(((((...))))).)	chr20:60889412-60889645(-)$1	1	1	18	10.3086
((((.(....).)))))	chr16:28834862-28835122(+)$1	1	209	226	9.4837
.(((((....)))))..	chr19:36302926-36303142(-)$1	1	51	68	12.2363
(.(((((...)))))))	chr6:119215625-119215901(+)$1	1	89	106	9.7401
)(((((....)))))((	chr1:154940198-154940436(-)$1	1	140	157	11.0779
.(((((....))))).)	chr15:102029217-102029469(-)$1	1	101	118	12.5386
)(((((....))))).)	chr22:20102586-20102844(-)$1	1	200	217	10.0168
.(((((....)))))))	chr16:31504364-31504635(-)$1	1	166	183	11.9693
.(((((....))))).)	chr1:40771306-40771554(-)$1	1	191	208	12.5386
.(((((......)))))	chr2:242501812-242502063(+)$1	1	48	65	9.7570
.(((((....))))).(	chr2:242499020-242499303(+)$1	1	80	97	10.6649
((((((....)))))((	chr10:21823974-21824264(+)$1	1	106	123	10.9246
.(((((....)))))..	chr12:6646090-6646382(+)$1	1	126	143	12.5093
)(((((....)))))((	chr19:623268-623559(-)$1	1	23	40	10.6557

#PSSM
[ : 0.25	: : 0.17	c : 0.10	a : 0.06	! : 0.06	" : 0.06	# : 0.05	e : 0.05	d : 0.03	% : 0.03	f : 0.03	b : 0.01	h : 0.01	C : 0.01	
e : 0.91	[ : 0.08	
e : 1.00	
e : 1.00	
e : 0.98	[ : 0.01	
e : 0.96	a : 0.03	
m : 0.65	o : 0.15	e : 0.08	n : 0.06	l : 0.03	
m : 0.65	o : 0.15	l : 0.12	n : 0.06	
m : 0.65	o : 0.15	l : 0.12	n : 0.06	
m : 0.65	o : 0.15	l : 0.08	n : 0.06	e : 0.03	
e : 0.74	o : 0.15	n : 0.06	a : 0.03	
e : 0.81	o : 0.15	] : 0.03	
e : 1.00	
e : 1.00	
e : 0.96	4 : 0.01	2 : 0.01	
e : 0.27	] : 0.20	3 : 0.08	c : 0.08	: : 0.08	2 : 0.05	4 : 0.05	b : 0.05	a : 0.03	d : 0.01	f : 0.01	g : 0.01	G : 0.01	
e : 0.24	c : 0.12	a : 0.10	] : 0.08	3 : 0.08	b : 0.06	2 : 0.05	4 : 0.05	f : 0.05	d : 0.03	: : 0.03	g : 0.03	C : 0.01	G : 0.01	

#score	639.8811410189711
#seq	58
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_UTR_m1_run2.txt

#BEAR
=====^^^^^^^^^^^^^^^^^^^=======	chr11:68201145-68201387(+)$1	242	50	81	19.7747
^^^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr3:96336254-96336458(-)$1	204	103	134	20.5515
dddggggggg####ammmma4444ggggggg	chr17:8076800-8077005(-)$1	205	70	101	12.7012
ccc!!ffffff[ccclllccc]ffffff]cc	chr6:31804750-31804954(+)$1	204	115	146	11.6858
ddd^^^^^^^^^^^^^^^^^^^^^dddd]cc	chr6:31802976-31803186(+)$1	210	50	81	19.7284
^^^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr3:96336267-96336491(-)$1	224	136	167	20.5515
ddd^^^^^^^^^^^^^^^^^^^^^dddd]cc	chr6:31802966-31803176(+)$1	210	60	91	19.7284
dddggggggg####ammmma4444ggggggg	chr17:8076761-8077000(-)$1	239	65	96	12.7012
===========[ccclllccc333=======	chr11:75111380-75111614(+)$1	234	14	45	14.2309
ccc[==========lll==========]ccc	chr8:134250822-134251065(-)$1	243	53	84	10.6214
===========[ccclllccc333=======	chr11:75111334-75111576(+)$1	242	60	91	14.2309
:dddd[dddd!!ccclllccc22dddd]ddd	chr11:122929568-122929786(-)$1	218	185	216	9.5994
^^^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr3:96336251-96336454(-)$1	203	99	130	20.5515
GGccc[ccc"""ccclllccc22ccc]ccc:	chr17:79803646-79803859(-)$1	213	180	211	10.5955
ddd^^^^^^^^^^^^^^^^^^^^^dddd]cc	chr6:31802963-31803166(+)$1	203	63	94	19.7284
ccc!!ffffff[ccclllccc]ffffff]cc	chr6:31804756-31804977(+)$1	221	109	140	11.6858
^^^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr3:96336258-96336467(-)$1	209	112	143	20.5515
^^^^^^^^^^^^^^^^^^^^^^^^ggggggg	chr3:96336291-96336499(-)$1	208	144	175	20.5515
dddccc!!dddd[ccclllccc]ddddccc]	chr6:31804777-31804981(+)$1	204	1	32	9.7678
ddddzzzzzzzzzzzzzzzzzdddd]fffff	chr17:1675097-1675358(+)$1	261	155	186	12.6850
ccc!!ffffff[ccclllccc]ffffff]cc	chr6:31804781-31804985(+)$1	204	84	115	11.6858
[ccc[ccc[bb!!ccclllccc22bb]ccc]	chr11:122930024-122930231(-)$1	207	132	163	10.8405
===========[ccclllccc333=======	chr11:75111376-75111580(+)$1	204	18	49	14.2309

#otherMatches

#Seq PSSM
UGUGCUCCGCCGCCCAGUUCCCCUGCGCGCG	chr11:68201145-68201387(+)$1	242	50	81	19.7747
ACCAACAAGCCAUUAUUACCCUCACUGUUAA	chr3:96336254-96336458(-)$1	204	103	134	20.5515
UGAGUGCAGAAUGUCGGCUGUUUGUCUGUau	chr17:8076800-8077005(-)$1	205	70	101	12.7012
UCACAGACUAGAGUCUCCGAUGCUGGUCAUG	chr6:31804750-31804954(+)$1	204	115	146	11.6858
GGGAUAGGAAGGGAGUGAUGAUGACCCCAGG	chr6:31802976-31803186(+)$1	210	50	81	19.7284
ACCAACAAGCCAUUAUUACCCUCACUGUUAA	chr3:96336267-96336491(-)$1	224	136	167	20.5515
GGGAUAGGAAGGGAGUGAUGAUGACCCCAGG	chr6:31802966-31803176(+)$1	210	60	91	19.7284
UGAGUGCAGAAUGUCGGCUGUUUGUCUGUau	chr17:8076761-8077000(-)$1	239	65	96	12.7012
AGAGCAGUUUCUUGUUUUGCAUGUGGAACUG	chr11:75111380-75111614(+)$1	234	14	45	14.2309
CCAAAGCUUAUUUUGUAAGAGUGAGCUCUGG	chr8:134250822-134251065(-)$1	243	53	84	10.6214
AGAGCAGUUUCUUGUUUUGCAUGUGGAACUG	chr11:75111334-75111576(+)$1	242	60	91	14.2309
AGGACCCUAGCACUGUCACAGACCUGGAGUC	chr11:122929568-122929786(-)$1	218	185	216	9.5994
ACCAACAAGCCAUUAUUACCCUCACUGUUAA	chr3:96336251-96336454(-)$1	203	99	130	20.5515
GGGGAAGCGUCUGCCAGUGGCUUUGUGUCCA	chr17:79803646-79803859(-)$1	213	180	211	10.5955
GGGAUAGGAAGGGAGUGAUGAUGACCCCAGG	chr6:31802963-31803166(+)$1	203	63	94	19.7284
UCACAGACUAGAGUCUCCGAUGCUGGUCAUG	chr6:31804756-31804977(+)$1	221	109	140	11.6858
ACCAACAAGCCAUUAUUACCCUCACUGUUAA	chr3:96336258-96336467(-)$1	209	112	143	20.5515
ACCAACAAGCCAUUAUUACCCUCACUGUUAA	chr3:96336291-96336499(-)$1	208	144	175	20.5515
GGACUGUUGUGUUUUCUUUGAGUGUACUAGA	chr6:31804777-31804981(+)$1	204	1	32	9.7678
ACCUGCAAGAGAUCAACAACUGGGUGCAGGC	chr17:1675097-1675358(+)$1	261	155	186	12.6850
UCACAGACUAGAGUCUCCGAUGCUGGUCAUG	chr6:31804781-31804985(+)$1	204	84	115	11.6858
aguuuccaccaaaagcuuggcuaaugauggc	chr11:122930024-122930231(-)$1	207	132	163	10.8405
AGAGCAGUUUCUUGUUUUGCAUGUGGAACUG	chr11:75111376-75111580(+)$1	204	18	49	14.2309

#DB
(((((...................)))))))	chr11:68201145-68201387(+)$1	1	50	81	19.7747
........................)))))))	chr3:96336254-96336458(-)$1	1	103	134	20.5515
((((((((((....(....)....)))))))	chr17:8076800-8077005(-)$1	1	70	101	12.7012
(((..((((((.(((...))).)))))).))	chr6:31804750-31804954(+)$1	1	115	146	11.6858
(((.....................)))).))	chr6:31802976-31803186(+)$1	1	50	81	19.7284
........................)))))))	chr3:96336267-96336491(-)$1	1	136	167	20.5515
(((.....................)))).))	chr6:31802966-31803176(+)$1	1	60	91	19.7284
((((((((((....(....)....)))))))	chr17:8076761-8077000(-)$1	1	65	96	12.7012
(((((((((((.(((...)))...)))))))	chr11:75111380-75111614(+)$1	1	14	45	14.2309
(((.((((((((((...)))))))))).)))	chr8:134250822-134251065(-)$1	1	53	84	10.6214
(((((((((((.(((...)))...)))))))	chr11:75111334-75111576(+)$1	1	60	91	14.2309
.((((.((((..(((...)))..)))).)))	chr11:122929568-122929786(-)$1	1	185	216	9.5994
........................)))))))	chr3:96336251-96336454(-)$1	1	99	130	20.5515
))(((.(((...(((...)))..))).))).	chr17:79803646-79803859(-)$1	1	180	211	10.5955
(((.....................)))).))	chr6:31802963-31803166(+)$1	1	63	94	19.7284
(((..((((((.(((...))).)))))).))	chr6:31804756-31804977(+)$1	1	109	140	11.6858
........................)))))))	chr3:96336258-96336467(-)$1	1	112	143	20.5515
........................)))))))	chr3:96336291-96336499(-)$1	1	144	175	20.5515
((((((..((((.(((...))).))))))).	chr6:31804777-31804981(+)$1	1	1	32	9.7678
((((.................)))).)))))	chr17:1675097-1675358(+)$1	1	155	186	12.6850
(((..((((((.(((...))).)))))).))	chr6:31804781-31804985(+)$1	1	84	115	11.6858
.(((.(((.((..(((...)))..)).))).	chr11:122930024-122930231(-)$1	1	132	163	10.8405
(((((((((((.(((...)))...)))))))	chr11:75111376-75111580(+)$1	1	18	49	14.2309

#PSSM
d : 0.30	^ : 0.21	= : 0.17	c : 0.17	: : 0.04	G : 0.04	[ : 0.04	
d : 0.34	^ : 0.21	c : 0.21	= : 0.17	G : 0.04	
d : 0.34	c : 0.26	^ : 0.21	= : 0.17	
^ : 0.34	= : 0.17	! : 0.13	c : 0.13	g : 0.08	d : 0.08	[ : 0.04	
^ : 0.34	= : 0.21	! : 0.13	g : 0.08	c : 0.08	d : 0.04	z : 0.04	[ : 0.04	
^ : 0.39	= : 0.17	f : 0.13	g : 0.08	[ : 0.08	c : 0.08	z : 0.04	
^ : 0.39	= : 0.17	f : 0.13	g : 0.08	c : 0.08	d : 0.04	! : 0.04	z : 0.04	
^ : 0.39	= : 0.17	f : 0.13	g : 0.08	c : 0.08	d : 0.04	! : 0.04	z : 0.04	
^ : 0.39	= : 0.17	f : 0.13	g : 0.08	d : 0.08	c : 0.04	z : 0.04	[ : 0.04	
^ : 0.39	= : 0.17	f : 0.13	g : 0.08	d : 0.08	" : 0.04	z : 0.04	b : 0.04	
^ : 0.39	= : 0.17	f : 0.13	# : 0.08	! : 0.04	" : 0.04	d : 0.04	z : 0.04	b : 0.04	
^ : 0.39	[ : 0.26	# : 0.08	! : 0.08	= : 0.04	" : 0.04	d : 0.04	z : 0.04	
^ : 0.39	c : 0.34	# : 0.08	= : 0.04	[ : 0.04	z : 0.04	! : 0.04	
c : 0.43	^ : 0.39	# : 0.08	= : 0.04	z : 0.04	
c : 0.43	^ : 0.39	a : 0.08	l : 0.04	z : 0.04	
^ : 0.39	l : 0.39	m : 0.08	c : 0.08	z : 0.04	
l : 0.47	^ : 0.39	m : 0.08	z : 0.04	
l : 0.43	^ : 0.39	m : 0.08	= : 0.04	z : 0.04	
^ : 0.39	c : 0.34	m : 0.08	l : 0.08	= : 0.04	z : 0.04	
c : 0.43	^ : 0.39	a : 0.08	= : 0.04	z : 0.04	
c : 0.43	^ : 0.39	4 : 0.08	= : 0.04	z : 0.04	
^ : 0.39	] : 0.13	3 : 0.13	4 : 0.08	2 : 0.08	c : 0.08	= : 0.04	d : 0.04	
^ : 0.39	f : 0.13	3 : 0.13	2 : 0.13	4 : 0.08	= : 0.04	] : 0.04	d : 0.04	
^ : 0.39	f : 0.13	3 : 0.13	d : 0.13	4 : 0.08	= : 0.04	c : 0.04	2 : 0.04	
g : 0.30	d : 0.26	= : 0.21	f : 0.13	c : 0.04	b : 0.04	
g : 0.30	= : 0.21	d : 0.21	f : 0.13	c : 0.04	] : 0.04	b : 0.04	
g : 0.30	= : 0.21	d : 0.21	f : 0.17	] : 0.08	
g : 0.30	= : 0.17	f : 0.17	d : 0.13	c : 0.13	] : 0.08	
g : 0.30	] : 0.26	= : 0.17	c : 0.17	d : 0.04	f : 0.04	
c : 0.43	g : 0.30	= : 0.17	d : 0.04	f : 0.04	
g : 0.30	c : 0.30	= : 0.17	] : 0.08	d : 0.04	: : 0.04	f : 0.04	

#score	348.98034955023473
#seq	23
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_CDS_m3_run1.txt

#BEAR
ffffpppppppfff	chr1:16262383-16262637(+)$1	254	147	161	12.3695
!!bbpppppppbb]	chr7:100172813-100173061(-)$1	248	75	89	12.0811
ddddpppppppddd	chr8:101733653-101733913(-)$1	260	147	161	13.6070
[cccpppppppccc	chr7:5644980-5645258(+)$1	278	11	25	14.0253
ddddpppppppddd	chr11:17098891-17099125(-)$1	234	33	47	13.6070
Hcccpppppppccc	chr7:72413098-72413374(+)$1	276	50	64	13.2811
ecccpppppppccc	chr10:74127783-74128059(-)$1	276	173	187	13.8886
ddddpppppppddd	chr22:22892058-22892280(-)$1	222	180	194	13.6070
"cccpppppppccc	chr17:80043453-80043741(-)$1	288	84	98	13.9730
!cccpppppppccc	chr17:7416065-7416313(+)$1	248	201	215	14.0606
"cccpppppppccc	chrX:140995364-140995606(+)$1	242	93	107	13.9730
ddddpppppppddd	chr12:53856171-53856399(+)$1	228	92	106	13.6070
cc[apppppppa]c	chr22:22890870-22891122(-)$1	252	163	177	13.0631
ddddpppppppddd	chr13:39586838-39587117(-)$1	279	120	134	13.6070
ddddpppppppddd	chr22:24109467-24109730(-)$1	263	51	65	13.6070
"cccpppppppccc	chr10:75519701-75520007(+)$1	306	78	92	13.9730
:cccpppppppccc	chr19:6415795-6416005(-)$1	210	1	15	13.0638
ffffpppppppfff	chr19:10940887-10941157(+)$1	270	229	243	12.3695
dcccpppppppccc	chr7:5568119-5568337(-)$1	218	146	160	13.9790
!cccpppppppccc	chr12:53856164-53856371(+)$1	207	112	126	14.0606
!cccpppppppccc	chr2:27447564-27447815(+)$1	251	46	60	14.0606
ecccpppppppccc	chr12:49522438-49522704(-)$1	266	195	209	13.8886
====ppppppp===	chr2:97526718-97527001(-)$1	283	183	197	13.0177
ggggpppppppggg	chr17:4848149-4848425(+)$1	276	30	44	12.9416
eeeepppppppeee	chr19:59061435-59061657(+)$1	222	99	113	12.6249
ddddpppppppddd	chr10:74033859-74034185(+)$1	326	53	67	13.6070
"cccpppppppccc	chr8:37887995-37888273(+)$1	278	88	102	13.9730
ddddpppppppddd	chr1:8416115-8416410(-)$1	295	72	86	13.6070
ddddpppppppddd	chrX:48887521-48887776(-)$1	255	201	215	13.6070
ddddpppppppddd	chr22:21982617-21982886(-)$1	269	55	69	13.6070
ffffpppppppfff	chr17:7751226-7751579(+)$1	353	307	321	12.3695
eeeepppppppeee	chr17:40947044-40947318(+)$1	274	232	246	12.6249
ddddpppppppddd	chr6:31593150-31593398(+)$1	248	218	232	13.6070
ddddpppppppddd	chr5:154182783-154183069(+)$1	286	111	125	13.6070
[cccpppppppccc	chr5:175958965-175959225(-)$1	260	200	214	14.0253
ffffpppppppfff	chr7:75933385-75933652(+)$1	267	51	65	12.3695
ffffpppppppfff	chr1:120277195-120277477(+)$1	282	253	267	12.3695
eeeepppppppeee	chr8:145151470-145151718(+)$1	248	208	222	12.6249
ddddpppppppddd	chr11:8008807-8009085(+)$1	278	78	92	13.6070
iiiipppppppiii	chr12:49443945-49444192(-)$1	247	216	230	12.8993
[cccpppppppccc	chr12:56716434-56716744(-)$1	310	81	95	14.0253
ddddpppppppddd	chr8:101733577-101733820(-)$1	243	54	68	13.6070
:cccpppppppccc	chr17:42153303-42153644(+)$1	341	30	44	13.0638
ccccpppppppccc	chr14:73743606-73743896(-)$1	290	178	192	13.8999
&cccpppppppccc	chr16:30000716-30001015(+)$1	299	168	182	13.3615
ddddpppppppddd	chr19:7712571-7712827(+)$1	256	157	171	13.6070
ggggpppppppggg	chr17:79826292-79826577(-)$1	285	76	90	12.9416
ddddpppppppddd	chr7:143078304-143078542(+)$1	238	8	22	13.6070
d[bbpppppppbb]	chr7:99705112-99705347(-)$1	235	20	34	11.9899
ddddpppppppddd	chr19:56125134-56125518(+)$1	384	230	244	13.6070
:cccpppppppccc	chr12:125396141-125396407(-)$1	266	1	15	13.0638
ff[apppppppa]f	chr17:80045958-80046172(-)$1	214	120	134	12.4901
ggggpppppppggg	chr16:30734841-30735153(+)$1	312	63	77	12.9416
[cccpppppppccc	chr16:28843425-28843708(+)$1	283	217	231	14.0253
ddddpppppppddd	chr1:33236550-33236827(+)$1	277	198	212	13.6070
[cccpppppppccc	chr7:150730620-150730939(+)$1	319	135	149	14.0253
ffffpppppppfff	chr11:64897242-64897488(-)$1	246	116	130	12.3695
ddddpppppppddd	chr11:5289622-5289892(-)$1	270	95	109	13.6070
!cccpppppppccc	chr19:10370296-10370580(+)$1	284	183	197	14.0606
ddddpppppppddd	chr7:75932019-75932302(+)$1	283	0	14	13.6070
ee[apppppppa]e	chr16:230565-230811(+)$1	246	72	86	12.6537
eeeepppppppeee	chr15:72492860-72493099(-)$1	239	198	212	12.6249
c[bbpppppppbb]	chr19:13058938-13059222(+)$1	284	218	232	11.9107
ddddpppppppddd	chr16:89347109-89347373(-)$1	264	77	91	13.6070
ggggpppppppggg	chr19:2248122-2248394(+)$1	272	147	161	12.9416
eeeepppppppeee	chr9:111853239-111853537(-)$1	298	243	257	12.6249
[cccpppppppccc	chr14:55529427-55529760(+)$1	333	41	55	14.0253
:cccpppppppccc	chr4:71705100-71705387(-)$1	287	87	101	13.0638
!cccpppppppccc	chr16:2819004-2819360(+)$1	356	80	94	14.0606
:cccpppppppccc	chr19:56203259-56203488(+)$1	229	211	225	13.0638
ddddpppppppddd	chr6:31610547-31610843(-)$1	296	173	187	13.6070
Jcccpppppppccc	chr2:27664573-27664852(+)$1	279	184	198	12.5745

#otherMatches

#Seq PSSM
GAGGCCCGUAUCCU	chr1:16262383-16262637(+)$1	254	147	161	12.3695
CUGCUGCUGCUGCU	chr7:100172813-100173061(-)$1	248	75	89	12.0811
GGGGACCUCCACCC	chr8:101733653-101733913(-)$1	260	147	161	13.6070
GACUAUAACAAGGU	chr7:5644980-5645258(+)$1	278	11	25	14.0253
AGGGGAUGAUGUUC	chr11:17098891-17099125(-)$1	234	33	47	13.6070
AGCUUCACCCCGGC	chr7:72413098-72413374(+)$1	276	50	64	13.2811
GAGCCCUUUGUGCU	chr10:74127783-74128059(-)$1	276	173	187	13.8886
AUUGCAGUAAACAA	chr22:22892058-22892280(-)$1	222	180	194	13.6070
CGCCACCCCCAGGC	chr17:80043453-80043741(-)$1	288	84	98	13.9730
CAGGUUUGUUUCCU	chr17:7416065-7416313(+)$1	248	201	215	14.0606
CCAGAGUUUCCCUG	chrX:140995364-140995606(+)$1	242	93	107	13.9730
GACUCUCUCCCAGU	chr12:53856171-53856399(+)$1	228	92	106	13.6070
CUGAGUCUAAGUGG	chr22:22890870-22891122(-)$1	252	163	177	13.0631
AGCGUUACCCCUGC	chr13:39586838-39587117(-)$1	279	120	134	13.6070
UGGCGACCACGGCC	chr22:24109467-24109730(-)$1	263	51	65	13.6070
ACCAACAUCGCUGG	chr10:75519701-75520007(+)$1	306	78	92	13.9730
CUGGCGCCUCCCCA	chr19:6415795-6416005(-)$1	210	1	15	13.0638
CACUUCCUCCCAGU	chr19:10940887-10941157(+)$1	270	229	243	12.3695
AUCCUGCGUCUGGA	chr7:5568119-5568337(-)$1	218	146	160	13.9790
UCCCCCCCGAAGGG	chr12:53856164-53856371(+)$1	207	112	126	14.0606
AGGCAAUUAAGGCC	chr2:27447564-27447815(+)$1	251	46	60	14.0606
GCACUCUGAUUGUG	chr12:49522438-49522704(-)$1	266	195	209	13.8886
GUGCUGUCAUUGCG	chr2:97526718-97527001(-)$1	283	183	197	13.0177
ACCCCACUUUUGGG	chr17:4848149-4848425(+)$1	276	30	44	12.9416
GAUCUGACCCUGAU	chr19:59061435-59061657(+)$1	222	99	113	12.6249
AGCGGCUUCUACGC	chr10:74033859-74034185(+)$1	326	53	67	13.6070
AGGAGACCAUGUCC	chr8:37887995-37888273(+)$1	278	88	102	13.9730
CGCCUCCAUCUGGC	chr1:8416115-8416410(-)$1	295	72	86	13.6070
UGCCCUGCCCAGGU	chrX:48887521-48887776(-)$1	255	201	215	13.6070
GGGCCCAGCUUGCC	chr22:21982617-21982886(-)$1	269	55	69	13.6070
GGCCACCCCCAGGC	chr17:7751226-7751579(+)$1	353	307	321	12.3695
UGGGCUCCUUUCCC	chr17:40947044-40947318(+)$1	274	232	246	12.6249
GCGGAAUGAUGCCG	chr6:31593150-31593398(+)$1	248	218	232	13.6070
CAGUUUGACACACU	chr5:154182783-154183069(+)$1	286	111	125	13.6070
AUGGUUGAUCUCCA	chr5:175958965-175959225(-)$1	260	200	214	14.0253
GCCCAGCUUGGGGG	chr7:75933385-75933652(+)$1	267	51	65	12.3695
GCCCUCCAUCUGGG	chr1:120277195-120277477(+)$1	282	253	267	12.3695
UGGAAUACUUCUCC	chr8:145151470-145151718(+)$1	248	208	222	12.6249
UCUUUCUCGACAAG	chr11:8008807-8009085(+)$1	278	78	92	13.6070
GUUCACAGCCAGAG	chr12:49443945-49444192(-)$1	247	216	230	12.8993
AUGGAGAUAACCCA	chr12:56716434-56716744(-)$1	310	81	95	14.0253
GGGGACCUCCACCC	chr8:101733577-101733820(-)$1	243	54	68	13.6070
UGCCUAGUCCUGGC	chr17:42153303-42153644(+)$1	341	30	44	13.0638
CCAGUCCUAUCCUG	chr14:73743606-73743896(-)$1	290	178	192	13.8999
CAUCUCCCCUUGAU	chr16:30000716-30001015(+)$1	299	168	182	13.3615
AGAGAAAUAAACUC	chr19:7712571-7712827(+)$1	256	157	171	13.6070
GGCCGCAGCCAGGC	chr17:79826292-79826577(-)$1	285	76	90	12.9416
GCCCCCUCUCCGGG	chr7:143078304-143078542(+)$1	238	8	22	13.6070
GAGCGAGUGAAGCG	chr7:99705112-99705347(-)$1	235	20	34	11.9899
GCCCGCCUUCGGGG	chr19:56125134-56125518(+)$1	384	230	244	13.6070
AUCCAAGAUAAGGA	chr12:125396141-125396407(-)$1	266	1	15	13.0638
CAGCUGCCUGUGGU	chr17:80045958-80046172(-)$1	214	120	134	12.4901
CUUCAGCCCCCGGA	chr16:30734841-30735153(+)$1	312	63	77	12.9416
UGACCUCAUCAGUC	chr16:28843425-28843708(+)$1	283	217	231	14.0253
AGGUUUGUCAUACC	chr1:33236550-33236827(+)$1	277	198	212	13.6070
UGGGCCCACCUCCC	chr7:150730620-150730939(+)$1	319	135	149	14.0253
CUGUGCCCCCUGCG	chr11:64897242-64897488(-)$1	246	116	130	12.3695
GCUACUCACUUUGG	chr11:5289622-5289892(-)$1	270	95	109	13.6070
CCACUGUUGAUGUG	chr19:10370296-10370580(+)$1	284	183	197	14.0606
GUCAGCCAGCAUGA	chr7:75932019-75932302(+)$1	283	0	14	13.6070
CGCGCCUCACCCAC	chr16:230565-230811(+)$1	246	72	86	12.6537
GCAUCUUCCCUGUG	chr15:72492860-72493099(-)$1	239	198	212	12.6249
CAGAGUCUGUGUCA	chr19:13058938-13059222(+)$1	284	218	232	11.9107
GUUUACAAGCAAAA	chr16:89347109-89347373(-)$1	264	77	91	13.6070
CCCCAGGCCCCGGG	chr19:2248122-2248394(+)$1	272	147	161	12.9416
ACAUCUACUUUGUG	chr9:111853239-111853537(-)$1	298	243	257	12.6249
CUGGACUCCCACCA	chr14:55529427-55529760(+)$1	333	41	55	14.0253
UGGCCACCUCUgcc	chr4:71705100-71705387(-)$1	287	87	101	13.0638
UAGCAGUUCCAGUU	chr16:2819004-2819360(+)$1	356	80	94	14.0606
UGUCUUUGGUUGAC	chr19:56203259-56203488(+)$1	229	211	225	13.0638
CCACCAUCACUGUG	chr6:31610547-31610843(-)$1	296	173	187	13.6070
UCAGUAUUACCCUG	chr2:27664573-27664852(+)$1	279	184	198	12.5745

#DB
((((.......)))	chr1:16262383-16262637(+)$1	1	147	161	12.3695
..((.......)).	chr7:100172813-100173061(-)$1	1	75	89	12.0811
((((.......)))	chr8:101733653-101733913(-)$1	1	147	161	13.6070
.(((.......)))	chr7:5644980-5645258(+)$1	1	11	25	14.0253
((((.......)))	chr11:17098891-17099125(-)$1	1	33	47	13.6070
((((.......)))	chr7:72413098-72413374(+)$1	1	50	64	13.2811
((((.......)))	chr10:74127783-74128059(-)$1	1	173	187	13.8886
((((.......)))	chr22:22892058-22892280(-)$1	1	180	194	13.6070
.(((.......)))	chr17:80043453-80043741(-)$1	1	84	98	13.9730
.(((.......)))	chr17:7416065-7416313(+)$1	1	201	215	14.0606
.(((.......)))	chrX:140995364-140995606(+)$1	1	93	107	13.9730
((((.......)))	chr12:53856171-53856399(+)$1	1	92	106	13.6070
((.(.......).)	chr22:22890870-22891122(-)$1	1	163	177	13.0631
((((.......)))	chr13:39586838-39587117(-)$1	1	120	134	13.6070
((((.......)))	chr22:24109467-24109730(-)$1	1	51	65	13.6070
.(((.......)))	chr10:75519701-75520007(+)$1	1	78	92	13.9730
.(((.......)))	chr19:6415795-6416005(-)$1	1	1	15	13.0638
((((.......)))	chr19:10940887-10941157(+)$1	1	229	243	12.3695
((((.......)))	chr7:5568119-5568337(-)$1	1	146	160	13.9790
.(((.......)))	chr12:53856164-53856371(+)$1	1	112	126	14.0606
.(((.......)))	chr2:27447564-27447815(+)$1	1	46	60	14.0606
((((.......)))	chr12:49522438-49522704(-)$1	1	195	209	13.8886
((((.......)))	chr2:97526718-97527001(-)$1	1	183	197	13.0177
((((.......)))	chr17:4848149-4848425(+)$1	1	30	44	12.9416
((((.......)))	chr19:59061435-59061657(+)$1	1	99	113	12.6249
((((.......)))	chr10:74033859-74034185(+)$1	1	53	67	13.6070
.(((.......)))	chr8:37887995-37888273(+)$1	1	88	102	13.9730
((((.......)))	chr1:8416115-8416410(-)$1	1	72	86	13.6070
((((.......)))	chrX:48887521-48887776(-)$1	1	201	215	13.6070
((((.......)))	chr22:21982617-21982886(-)$1	1	55	69	13.6070
((((.......)))	chr17:7751226-7751579(+)$1	1	307	321	12.3695
((((.......)))	chr17:40947044-40947318(+)$1	1	232	246	12.6249
((((.......)))	chr6:31593150-31593398(+)$1	1	218	232	13.6070
((((.......)))	chr5:154182783-154183069(+)$1	1	111	125	13.6070
.(((.......)))	chr5:175958965-175959225(-)$1	1	200	214	14.0253
((((.......)))	chr7:75933385-75933652(+)$1	1	51	65	12.3695
((((.......)))	chr1:120277195-120277477(+)$1	1	253	267	12.3695
((((.......)))	chr8:145151470-145151718(+)$1	1	208	222	12.6249
((((.......)))	chr11:8008807-8009085(+)$1	1	78	92	13.6070
((((.......)))	chr12:49443945-49444192(-)$1	1	216	230	12.8993
.(((.......)))	chr12:56716434-56716744(-)$1	1	81	95	14.0253
((((.......)))	chr8:101733577-101733820(-)$1	1	54	68	13.6070
.(((.......)))	chr17:42153303-42153644(+)$1	1	30	44	13.0638
((((.......)))	chr14:73743606-73743896(-)$1	1	178	192	13.8999
.(((.......)))	chr16:30000716-30001015(+)$1	1	168	182	13.3615
((((.......)))	chr19:7712571-7712827(+)$1	1	157	171	13.6070
((((.......)))	chr17:79826292-79826577(-)$1	1	76	90	12.9416
((((.......)))	chr7:143078304-143078542(+)$1	1	8	22	13.6070
(.((.......)).	chr7:99705112-99705347(-)$1	1	20	34	11.9899
((((.......)))	chr19:56125134-56125518(+)$1	1	230	244	13.6070
.(((.......)))	chr12:125396141-125396407(-)$1	1	1	15	13.0638
((.(.......).)	chr17:80045958-80046172(-)$1	1	120	134	12.4901
((((.......)))	chr16:30734841-30735153(+)$1	1	63	77	12.9416
.(((.......)))	chr16:28843425-28843708(+)$1	1	217	231	14.0253
((((.......)))	chr1:33236550-33236827(+)$1	1	198	212	13.6070
.(((.......)))	chr7:150730620-150730939(+)$1	1	135	149	14.0253
((((.......)))	chr11:64897242-64897488(-)$1	1	116	130	12.3695
((((.......)))	chr11:5289622-5289892(-)$1	1	95	109	13.6070
.(((.......)))	chr19:10370296-10370580(+)$1	1	183	197	14.0606
((((.......)))	chr7:75932019-75932302(+)$1	1	0	14	13.6070
((.(.......).)	chr16:230565-230811(+)$1	1	72	86	12.6537
((((.......)))	chr15:72492860-72493099(-)$1	1	198	212	12.6249
(.((.......)).	chr19:13058938-13059222(+)$1	1	218	232	11.9107
((((.......)))	chr16:89347109-89347373(-)$1	1	77	91	13.6070
((((.......)))	chr19:2248122-2248394(+)$1	1	147	161	12.9416
((((.......)))	chr9:111853239-111853537(-)$1	1	243	257	12.6249
.(((.......)))	chr14:55529427-55529760(+)$1	1	41	55	14.0253
.(((.......)))	chr4:71705100-71705387(-)$1	1	87	101	13.0638
.(((.......)))	chr16:2819004-2819360(+)$1	1	80	94	14.0606
.(((.......)))	chr19:56203259-56203488(+)$1	1	211	225	13.0638
((((.......)))	chr6:31610547-31610843(-)$1	1	173	187	13.6070
((((.......)))	chr2:27664573-27664852(+)$1	1	184	198	12.5745

#PSSM
d : 0.33	e : 0.11	f : 0.09	! : 0.08	[ : 0.08	: : 0.06	" : 0.05	g : 0.05	c : 0.04	H : 0.01	= : 0.01	i : 0.01	& : 0.01	J : 0.01	
c : 0.38	d : 0.30	f : 0.09	e : 0.08	g : 0.05	[ : 0.02	! : 0.01	= : 0.01	i : 0.01	
c : 0.37	d : 0.30	f : 0.08	e : 0.06	g : 0.05	b : 0.04	[ : 0.04	= : 0.01	i : 0.01	
c : 0.37	d : 0.30	f : 0.08	e : 0.06	g : 0.05	b : 0.04	a : 0.04	= : 0.01	i : 0.01	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
p : 0.99	
c : 0.37	d : 0.30	f : 0.08	e : 0.06	g : 0.05	b : 0.04	a : 0.04	= : 0.01	i : 0.01	
c : 0.37	d : 0.30	f : 0.08	e : 0.06	g : 0.05	b : 0.04	] : 0.04	= : 0.01	i : 0.01	
c : 0.38	d : 0.30	f : 0.09	e : 0.08	g : 0.05	] : 0.04	= : 0.01	i : 0.01	

#score	959.1099593896654
#seq	72
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_CDS_m1_run1.txt

#BEAR
a!!cccooooooccc22	chr16:30675945-30676180(+)$1	235	131	148	12.5545
bb[cccooooooccc22	chrM:14214-14422(-)$1	208	60	77	12.1916
ccddddoooooodddd2	chr16:58619269-58619537(-)$1	268	198	215	10.5097
iiiiiiooooooiiiii	chr10:73958163-73958542(-)$1	379	163	180	10.8838
:eeeeeooooooeeeee	chr19:51323541-51323850(-)$1	309	67	84	9.6833
bb[cccooooooccc22	chrM:14249-14462(-)$1	213	100	117	12.1916
dd:cccooooooccccc	chr17:4793421-4793683(+)$1	262	164	181	10.1832
ffffffoooooofffff	chr17:28256911-28257216(-)$1	305	53	70	9.9457
!!ddddoooooodddd4	chr5:175956982-175957200(-)$1	218	41	58	10.5681
!!ddddoooooodddd4	chrM:14185-14389(-)$1	204	51	68	10.5681
ccddddoooooodddd]	chr17:29422120-29422418(+)$1	298	79	96	10.4232
!eeeeeooooooeeeee	chr17:80708448-80708715(+)$1	267	97	114	10.5549
hhhhhhoooooohhhhh	chr12:53849568-53849797(+)$1	229	204	221	9.7219
Ccccbboooooobb]cc	chr1:16262385-16262744(+)$1	359	198	215	9.0706
Eeeeeeooooooeeeee	chrM:14358-14574(-)$1	216	13	30	9.5986
ffffffoooooofffff	chr19:55558644-55558929(+)$1	285	250	267	9.9457
ffffffoooooofffff	chr1:33236832-33237073(+)$1	241	89	106	9.9457
!eeeeeooooooeeeee	chr16:30675665-30675938(+)$1	273	236	253	10.5549
ffffffoooooofffff	chr1:33236873-33237149(+)$1	276	48	65	9.9457
###cccooooooccc22	chr12:53856224-53856445(+)$1	221	86	103	12.2538
eeecccoooooocccCC	chr14:63861857-63862167(-)$1	310	194	211	9.0309
hhhhhhoooooohhhhh	chr12:53849677-53849885(+)$1	208	95	112	9.7219
hhhhhhoooooohhhhh	chr12:53849597-53849814(+)$1	217	175	192	9.7219
f####aooooooa4444	chr12:49444057-49444362(-)$1	305	148	165	10.2940
!eeeeeooooooeeeee	chr17:80708354-80708618(+)$1	264	191	208	10.5549
ffffbboooooobb]ff	chr17:76198603-76198909(+)$1	306	191	208	9.4319
ggggggooooooggggg	chr2:172016818-172017096(-)$1	278	191	208	10.8917
:eeeeeooooooeeeee	chr8:95523530-95523805(-)$1	275	245	262	9.6833
%eeeeeooooooeeeee	chr19:51323498-51323741(-)$1	243	132	149	9.8873
"""cccooooooccchh	chr17:7750926-7751192(+)$1	266	136	153	11.5819
d[ddddoooooodddd]	chr1:1250698-1250970(-)$1	272	191	208	10.3853
bb[cccooooooccc22	chrM:14233-14442(-)$1	209	80	97	12.1916
ee[cccooooooccc33	chrX:129147755-129148080(+)$1	325	292	309	12.2310
:eeeeeooooooeeeee	chr3:47454302-47454586(+)$1	284	159	176	9.6833
ffffffoooooofffff	chr16:30389899-30390184(-)$1	285	251	268	9.9457
ffffffoooooofffff	chr5:61602141-61602416(+)$1	275	180	197	9.9457
hhhhhhoooooohhhhh	chr7:116608303-116608597(+)$1	294	234	251	9.7219
hhhh[aooooooa]hhh	chr20:401366-401640(+)$1	274	89	106	9.9273
bb[cccooooooccc22	chrM:14209-14414(-)$1	205	52	69	12.1916
[cccbboooooobb]cc	chr12:49433941-49434195(-)$1	254	148	165	10.0736
"eeeeeooooooeeeee	chr16:15031894-15032176(+)$1	282	220	237	10.5167
###cccooooooccc55	chr12:49434104-49434355(-)$1	251	65	82	10.3046
dddcccooooooccc22	chr2:48132736-48133034(-)$1	298	135	152	11.7033
a[ddddoooooodddd]	chr5:31526437-31526728(-)$1	291	271	288	10.6237
cc[cccooooooccccc	chr19:39014364-39014659(+)$1	295	52	69	11.8001
bb[cccooooooccc22	chrM:14242-14449(-)$1	207	87	104	12.1916
a!!cccooooooccc22	chr10:121355842-121356127(-)$1	285	142	159	12.5545
dccc[aooooooa]ccc	chr19:8468334-8468593(+)$1	259	20	37	10.7375
a!!cccooooooccc22	chr16:30675934-30676145(+)$1	211	142	159	12.5545
d[bb[aooooooa]bb]	chrM:14374-14601(-)$1	227	204	221	9.6767
eee[bboooooobb]ee	chrX:53308719-53308996(-)$1	277	219	236	9.6893
bb[cccooooooccc22	chrM:14198-14409(-)$1	211	47	64	12.1916
bb[cccooooooccc22	chrM:14222-14433(-)$1	211	71	88	12.1916
"""cccooooooccc]d	chr4:25792069-25792348(-)$1	279	242	259	11.7608
c!!cccooooooccc22	chr3:10360782-10361102(-)$1	320	132	149	12.4806
bb[cccooooooccc22	chrM:14273-14483(-)$1	210	121	138	12.1916
ggggggooooooggggg	chr2:172016736-172017018(-)$1	282	113	130	10.8917

#otherMatches

#Seq PSSM
AAUGCCCAGGGUGGCCC	chr16:30675945-30676180(+)$1	235	131	148	12.5545
UGGGUGAAAGAGUAUGA	chrM:14214-14422(-)$1	208	60	77	12.1916
GACAGGAUCCUGCCUGA	chr16:58619269-58619537(-)$1	268	198	215	10.5097
ACAAGGAUCUGGUCUUG	chr10:73958163-73958542(-)$1	379	163	180	10.8838
UUGGGGACCCUCCCCCA	chr19:51323541-51323850(-)$1	309	67	84	9.6833
UGGGUGAAAGAGUAUGA	chrM:14249-14462(-)$1	213	100	117	12.1916
GAACAGGCCCUGCUGCU	chr17:4793421-4793683(+)$1	262	164	181	10.1832
CUGCGGCCGUUCCCGCG	chr17:28256911-28257216(-)$1	305	53	70	9.9457
CUGCAGCAGCCACUGCC	chr5:175956982-175957200(-)$1	218	41	58	10.5681
GUGGUUGUGGUAAACUU	chrM:14185-14389(-)$1	204	51	68	10.5681
UGGGAGCCUGCACUCCA	chr17:29422120-29422418(+)$1	298	79	96	10.4232
UGUUUAACUACCUGAAC	chr17:80708448-80708715(+)$1	267	97	114	10.5549
CAAACUGGAAGAGGUUU	chr12:53849568-53849797(+)$1	229	204	221	9.7219
GACCCCUCCUGUGGUGG	chr1:16262385-16262744(+)$1	359	198	215	9.0706
CGGGUGUGUUAUUAUUC	chrM:14358-14574(-)$1	216	13	30	9.5986
AGCCUCACCUGGGAGGC	chr19:55558644-55558929(+)$1	285	250	267	9.9457
GACUCCACUGCAGGAGU	chr1:33236832-33237073(+)$1	241	89	106	9.9457
UGGGGCACCUGAGCCUC	chr16:30675665-30675938(+)$1	273	236	253	10.5549
GACUCCACUGCAGGAGU	chr1:33236873-33237149(+)$1	276	48	65	9.9457
CCAAGCCGUCCAGCUCU	chr12:53856224-53856445(+)$1	221	86	103	12.2538
UGUAGCUGAACUGCUGG	chr14:63861857-63862167(-)$1	310	194	211	9.0309
CAAACUGGAAGAGGUUU	chr12:53849677-53849885(+)$1	208	95	112	9.7219
CAAACUGGAAGAGGUUU	chr12:53849597-53849814(+)$1	217	175	192	9.7219
UCCCCGUUGAGUCCCAU	chr12:49444057-49444362(-)$1	305	148	165	10.2940
UGUUUAACUACCUGAAC	chr17:80708354-80708618(+)$1	264	191	208	10.5549
UUCCUGUUCUUUCACGG	chr17:76198603-76198909(+)$1	306	191	208	9.4319
GGGCCGCCAUCUUGGUC	chr2:172016818-172017096(-)$1	278	191	208	10.8917
CUCAGAAGAGACUCUGG	chr8:95523530-95523805(-)$1	275	245	262	9.6833
UGGCUUCAACAUGAGCC	chr19:51323498-51323741(-)$1	243	132	149	9.8873
UGAAGGGUCCGGCCUGC	chr17:7750926-7751192(+)$1	266	136	153	11.5819
GUAGGCUGAGGUGUCUU	chr1:1250698-1250970(-)$1	272	191	208	10.3853
UGGGUGAAAGAGUAUGA	chrM:14233-14442(-)$1	209	80	97	12.1916
CCCCUGUCCUUUCAGCC	chrX:129147755-129148080(+)$1	325	292	309	12.2310
AGCCCCCAGCUCGGGGC	chr3:47454302-47454586(+)$1	284	159	176	9.6833
GAGGUGAGCACGCACCU	chr16:30389899-30390184(-)$1	285	251	268	9.9457
AGAUCCAGAUCGGGAUU	chr5:61602141-61602416(+)$1	275	180	197	9.9457
ggugugcgccaccaugc	chr7:116608303-116608597(+)$1	294	234	251	9.7219
GGGGUCUGACCCGCCCC	chr20:401366-401640(+)$1	274	89	106	9.9273
UGGGUGAAAGAGUAUGA	chrM:14209-14414(-)$1	205	52	69	12.1916
AGCAGGUGAGCUCCAUG	chr12:49433941-49434195(-)$1	254	148	165	10.0736
uGCUGGGAUUUAUCAGC	chr16:15031894-15032176(+)$1	282	220	237	10.5167
CCAGUCUCCACUGACAC	chr12:49434104-49434355(-)$1	251	65	82	10.3046
UGUGUGUCCCUCCGCCA	chr2:48132736-48133034(-)$1	298	135	152	11.7033
AGUGCUAAUAACAGCAG	chr5:31526437-31526728(-)$1	291	271	288	10.6237
GCCUGGAAAUGCCCAGC	chr19:39014364-39014659(+)$1	295	52	69	11.8001
UGGGUGAAAGAGUAUGA	chrM:14242-14449(-)$1	207	87	104	12.1916
CACCCACCAUGAUGGAA	chr10:121355842-121356127(-)$1	285	142	159	12.5545
CCCGGGGAACAACGUGG	chr19:8468334-8468593(+)$1	259	20	37	10.7375
AAUGCCCAGGGUGGCCC	chr16:30675934-30676145(+)$1	211	142	159	12.5545
UAGUGGGGUUAGCGAUG	chrM:14374-14601(-)$1	227	204	221	9.6767
CUUACCCCCUCAGGCAG	chrX:53308719-53308996(-)$1	277	219	236	9.6893
UGGGUGAAAGAGUAUGA	chrM:14198-14409(-)$1	211	47	64	12.1916
UGGGUGAAAGAGUAUGA	chrM:14222-14433(-)$1	211	71	88	12.1916
GAAGCUACCCGAGGCAA	chr4:25792069-25792348(-)$1	279	242	259	11.7608
GAAUCUGAUGAGAGAAC	chr3:10360782-10361102(-)$1	320	132	149	12.4806
UGGGUGAAAGAGUAUGA	chrM:14273-14483(-)$1	210	121	138	12.1916
GGGCCGCCAUCUUGGUC	chr2:172016736-172017018(-)$1	282	113	130	10.8917

#DB
(..(((......)))..	chr16:30675945-30676180(+)$1	1	131	148	12.5545
((.(((......)))..	chrM:14214-14422(-)$1	1	60	77	12.1916
((((((......)))).	chr16:58619269-58619537(-)$1	1	198	215	10.5097
((((((......)))))	chr10:73958163-73958542(-)$1	1	163	180	10.8838
.(((((......)))))	chr19:51323541-51323850(-)$1	1	67	84	9.6833
((.(((......)))..	chrM:14249-14462(-)$1	1	100	117	12.1916
)).(((......)))((	chr17:4793421-4793683(+)$1	1	164	181	10.1832
((((((......)))))	chr17:28256911-28257216(-)$1	1	53	70	9.9457
..((((......)))).	chr5:175956982-175957200(-)$1	1	41	58	10.5681
..((((......)))).	chrM:14185-14389(-)$1	1	51	68	10.5681
((((((......)))).	chr17:29422120-29422418(+)$1	1	79	96	10.4232
.(((((......)))))	chr17:80708448-80708715(+)$1	1	97	114	10.5549
((((((......)))))	chr12:53849568-53849797(+)$1	1	204	221	9.7219
)(((((......)).))	chr1:16262385-16262744(+)$1	1	198	215	9.0706
((((((......)))))	chrM:14358-14574(-)$1	1	13	30	9.5986
((((((......)))))	chr19:55558644-55558929(+)$1	1	250	267	9.9457
((((((......)))))	chr1:33236832-33237073(+)$1	1	89	106	9.9457
.(((((......)))))	chr16:30675665-30675938(+)$1	1	236	253	10.5549
((((((......)))))	chr1:33236873-33237149(+)$1	1	48	65	9.9457
...(((......)))..	chr12:53856224-53856445(+)$1	1	86	103	12.2538
)))(((......)))))	chr14:63861857-63862167(-)$1	1	194	211	9.0309
((((((......)))))	chr12:53849677-53849885(+)$1	1	95	112	9.7219
((((((......)))))	chr12:53849597-53849814(+)$1	1	175	192	9.7219
(....(......)....	chr12:49444057-49444362(-)$1	1	148	165	10.2940
.(((((......)))))	chr17:80708354-80708618(+)$1	1	191	208	10.5549
((((((......)).))	chr17:76198603-76198909(+)$1	1	191	208	9.4319
((((((......)))))	chr2:172016818-172017096(-)$1	1	191	208	10.8917
.(((((......)))))	chr8:95523530-95523805(-)$1	1	245	262	9.6833
.(((((......)))))	chr19:51323498-51323741(-)$1	1	132	149	9.8873
...(((......)))))	chr17:7750926-7751192(+)$1	1	136	153	11.5819
(.((((......)))).	chr1:1250698-1250970(-)$1	1	191	208	10.3853
((.(((......)))..	chrM:14233-14442(-)$1	1	80	97	12.1916
((.(((......)))..	chrX:129147755-129148080(+)$1	1	292	309	12.2310
.(((((......)))))	chr3:47454302-47454586(+)$1	1	159	176	9.6833
((((((......)))))	chr16:30389899-30390184(-)$1	1	251	268	9.9457
((((((......)))))	chr5:61602141-61602416(+)$1	1	180	197	9.9457
((((((......)))))	chr7:116608303-116608597(+)$1	1	234	251	9.7219
((((.(......).)))	chr20:401366-401640(+)$1	1	89	106	9.9273
((.(((......)))..	chrM:14209-14414(-)$1	1	52	69	12.1916
.(((((......)).))	chr12:49433941-49434195(-)$1	1	148	165	10.0736
.(((((......)))))	chr16:15031894-15032176(+)$1	1	220	237	10.5167
...(((......)))..	chr12:49434104-49434355(-)$1	1	65	82	10.3046
((((((......)))..	chr2:48132736-48133034(-)$1	1	135	152	11.7033
(.((((......)))).	chr5:31526437-31526728(-)$1	1	271	288	10.6237
((.(((......)))))	chr19:39014364-39014659(+)$1	1	52	69	11.8001
((.(((......)))..	chrM:14242-14449(-)$1	1	87	104	12.1916
(..(((......)))..	chr10:121355842-121356127(-)$1	1	142	159	12.5545
((((.(......).)))	chr19:8468334-8468593(+)$1	1	20	37	10.7375
(..(((......)))..	chr16:30675934-30676145(+)$1	1	142	159	12.5545
(.((.(......).)).	chrM:14374-14601(-)$1	1	204	221	9.6767
(((.((......)).))	chrX:53308719-53308996(-)$1	1	219	236	9.6893
((.(((......)))..	chrM:14198-14409(-)$1	1	47	64	12.1916
((.(((......)))..	chrM:14222-14433(-)$1	1	71	88	12.1916
...(((......))).)	chr4:25792069-25792348(-)$1	1	242	259	11.7608
(..(((......)))..	chr3:10360782-10361102(-)$1	1	132	149	12.4806
((.(((......)))..	chrM:14273-14483(-)$1	1	121	138	12.1916
((((((......)))))	chr2:172016736-172017018(-)$1	1	113	130	10.8917

#PSSM
b : 0.14	f : 0.14	d : 0.08	! : 0.08	h : 0.08	a : 0.07	c : 0.07	: : 0.05	e : 0.05	" : 0.05	# : 0.03	g : 0.03	i : 0.01	C : 0.01	E : 0.01	% : 0.01	[ : 0.01	
e : 0.21	b : 0.14	f : 0.12	! : 0.10	c : 0.10	h : 0.08	# : 0.05	[ : 0.05	d : 0.03	g : 0.03	" : 0.03	i : 0.01	
e : 0.19	[ : 0.17	d : 0.12	f : 0.12	h : 0.08	! : 0.07	c : 0.05	# : 0.05	g : 0.03	" : 0.03	i : 0.01	: : 0.01	b : 0.01	
c : 0.42	e : 0.15	f : 0.12	d : 0.10	h : 0.08	g : 0.03	i : 0.01	# : 0.01	b : 0.01	[ : 0.01	
c : 0.36	e : 0.15	d : 0.10	f : 0.10	h : 0.07	b : 0.07	[ : 0.05	g : 0.03	i : 0.01	# : 0.01	
c : 0.36	e : 0.15	d : 0.10	f : 0.10	h : 0.07	b : 0.07	a : 0.07	g : 0.03	i : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
c : 0.36	e : 0.15	d : 0.10	f : 0.10	h : 0.07	b : 0.07	a : 0.07	g : 0.03	i : 0.01	
c : 0.36	e : 0.15	d : 0.10	f : 0.10	h : 0.07	b : 0.07	] : 0.05	g : 0.03	i : 0.01	4 : 0.01	
c : 0.38	e : 0.15	d : 0.10	f : 0.10	h : 0.08	] : 0.07	g : 0.03	i : 0.01	4 : 0.01	b : 0.01	
2 : 0.24	e : 0.17	f : 0.12	d : 0.10	h : 0.10	c : 0.08	g : 0.03	i : 0.01	C : 0.01	4 : 0.01	3 : 0.01	5 : 0.01	b : 0.01	] : 0.01	
2 : 0.26	e : 0.17	f : 0.12	h : 0.10	c : 0.08	] : 0.07	4 : 0.05	g : 0.03	i : 0.01	C : 0.01	3 : 0.01	5 : 0.01	d : 0.01	

#score	612.4541503083564
#seq	57
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF097FBP_SF3B4_transcript_m3_run2.txt

#BEAR
ffff"""ddddmmmmdddd22fffff	chr19:6697773-6698006(-)$1	233	190	216	11.9759
fffff[eeeeemmmmeeeee]fffff	chr16:89337215-89337492(-)$1	277	220	246	9.5630
fffffbbddddmmmmdddd]bb]fff	chr10:100183544-100183824(-)$1	280	86	112	10.5009
eeee"""ddddooooooddddeeeee	chr16:89795474-89795740(+)$1	266	61	87	10.2398
eeeee!!ddddmmmmdddd22eeeee	chr3:12954956-12955215(-)$1	259	104	130	13.7232
""ddddeeeeemmmmeeeee4444dd	chr6:35446387-35446654(-)$1	267	175	201	10.3750
fffff"""ddddllldddd22fffff	chr1:24122660-24122930(-)$1	270	54	80	9.4434
eeeee!!ddddmmmmdddd333eeee	chrX:152969486-152969750(-)$1	264	7	33	14.1182
eeeee!!ddddmmmmddddeeeeeee	chr20:62368717-62368935(+)$1	218	187	213	13.5777
dddd[ccc[ccclllcccccc]dddd	chr16:448809-449099(+)$1	290	140	166	7.4518
ddd!!dddd[ammmmadddd333ddd	chr1:227922424-227922678(-)$1	254	4	30	11.2664
eeee[addddnnnnndddd]a]eeee	chr6:42903148-42903412(+)$1	264	52	78	9.5440
bb[ccc!!cccmmmmccc22ccc]bb	chr16:88783526-88783737(-)$1	211	0	26	8.5640
Edddd[eeeeemmmmeeeeeddddcc	chr17:63533182-63533433(-)$1	251	9	35	9.5763
e$$$$$eeeeemmmmeeeee333eee	chr13:33701580-33701845(-)$1	265	166	192	9.9619
"""bb!!ddddmmmmdddd333bb]e	chr3:128973663-128973917(+)$1	254	192	218	12.0580
g[eeeeeddddmmmmdddd]eeeee2	chr16:67143813-67144061(+)$1	248	214	240	12.6306
f####dddd[ammmma]dddd4444f	chr12:133143906-133144207(+)$1	301	150	176	9.8037
GGGddddddddmmmmdddd]ddddcc	chr17:4576645-4576954(-)$1	309	103	129	10.3556
deeeeeeeeeemmmmeeeee]eeeee	chr4:17606043-17606315(+)$1	272	143	169	11.0171
!eeeee[ddddmmmmddddeeeee]d	chr12:57627591-57627858(+)$1	267	219	245	13.1062
[dddd!!ddddmmmmdddd]dddd]a	chr8:144669015-144669276(-)$1	261	127	153	13.1483
::eeeeeddddmmmmdddd4444eee	chr3:50255787-50256029(+)$1	242	59	85	11.2275
beeeee[ddddmmmmdddd]eeeee]	chr20:61917564-61917813(+)$1	249	57	83	13.0661
ddd[bb[ddddmmmmdddd]bb]ddd	chr11:821498-821747(+)$1	249	218	244	11.7955
#dddd####bbmmmmbb4444dddd2	chr1:20810119-20810390(-)$1	271	165	191	8.6799
!dddd[eeeeemmmmeeeee]dddd0	chr8:145112134-145112415(-)$1	281	175	201	10.2492
eeeee"""cccmmmmccceeeee22e	chr19:5082230-5082477(+)$1	247	163	189	10.5865
ddd####ddddmmmmddddddddccc	chr5:176523098-176523397(+)$1	299	23	49	12.2167
e[iiiiiiiiimmmmiiiiiiiii]e	chr1:110168764-110169037(+)$1	273	230	256	9.1154
a[ddddeeeeemmmmeeeee]dddd]	chr17:40717315-40717586(+)$1	271	135	161	10.2938
a[dddd"""bbmmmmbb333dddd]a	chr19:2427239-2427491(-)$1	252	61	87	8.6314
ddddaa[ddddmmmmdddd]a]a]dd	chr9:130863410-130863695(+)$1	285	121	147	12.7750
fccc[a[ddddmmmmdddd]a]ccc3	chr1:36927678-36927935(-)$1	257	120	146	12.4989
eeeee[eeeeemmmmeeeeeeeeee]	chr17:48561904-48562171(+)$1	267	113	139	11.1515
ccc[gggggggmmmmggggggg]ccc	chr7:127721266-127721510(+)$1	244	216	242	8.5531
cdddd[eeeeemmmmeeeeedddd]c	chr17:74382325-74382568(+)$1	243	40	66	10.5497
ee[ccc[ddddmmmmdddd]ccceee	chr19:48892927-48893163(-)$1	236	131	157	13.0370
::eeeeeddddmmmmdddd]eeeee:	chr11:821477-821698(+)$1	221	185	211	10.2038
eeeee[cccooooooccceeeeeddd	chr16:57261097-57261373(+)$1	276	139	165	8.0565
dd[ccc[ddddmmmmddddcccdddd	chr14:23345732-23345994(+)$1	262	49	75	12.2561
c:bbcccddddmmmmdddd22ccc]b	chr17:41607272-41607528(-)$1	256	228	254	10.2191
dddd[ddddbbmmmmbb]dddd]ddd	chr20:60736295-60736554(+)$1	259	20	46	9.1253
cccccccddddmmmmddddddddfff	chr20:62365848-62366208(+)$1	360	111	137	11.4466
eeeee"""ddddllldddd]eeeeed	chr16:4564569-4564848(-)$1	279	107	133	11.3749
!eeeee!!cccmmmmccc]eeeee]e	chr12:133463819-133464108(-)$1	289	6	32	10.8099
dd!!ccc[ddddlllddddccc22dd	chr1:1330800-1331032(-)$1	232	204	230	9.1044
ee!!bb[ddddmmmmddddbb22eee	chr20:60589656-60589928(-)$1	272	156	182	11.5197
cccddddddddmmmmdddd]dddd]c	chr11:598186-598466(+)$1	280	246	272	12.1573
####bb[ddddmmmmddddbb333dd	chr8:30416232-30416500(+)$1	268	103	129	11.1444
fffff"""ddddllldddd]ffffff	chr6:42852200-42852475(+)$1	275	71	97	9.4593
eeeebb[addddllldddd]a333bb	chr17:73897251-73897514(-)$1	263	162	188	9.7605
eeee"""ddddmmmmdddd22eeeee	chr1:36923482-36923745(-)$1	263	166	192	13.6816
:eeeeeeeeeemmmmeeeee]eeeee	chr1:53370663-53370918(-)$1	255	159	185	10.2070
eeccc[a[cccmmmmccc]a]ccc]e	chr20:31601463-31601711(+)$1	248	211	237	10.0029

#otherMatches

#Seq PSSM
UGCCCGAGCAGGGAUCUGUGUGGCAG	chr19:6697773-6698006(-)$1	233	190	216	11.9759
UUCAUCUCCUGGCUCCAGGACGUGGA	chr16:89337215-89337492(-)$1	277	220	246	9.5630
UGUCUGUCCUGGGUGCAGGAACAAGG	chr10:100183544-100183824(-)$1	280	86	112	10.5009
AAAUGUGGGACAUGGGGGUCCAUUUG	chr16:89795474-89795740(+)$1	266	61	87	10.2398
CCCAGGGCUCCUAGAGGAGAGCUGGG	chr3:12954956-12955215(-)$1	259	104	130	13.7232
uccaggccuggaucuucagGAACACC	chr6:35446387-35446654(-)$1	267	175	201	10.3750
CCUGCCUAGCACCCGGUGCCUGCGGG	chr1:24122660-24122930(-)$1	270	54	80	9.4434
AGAGGACGGCUCCUGGGCCCCACCUU	chrX:152969486-152969750(-)$1	264	7	33	14.1182
GGGGCUGCCAGUGUCCUGGGCCCCUC	chr20:62368717-62368935(+)$1	218	187	213	13.5777
GGGUGAGGUGGCAGUGCCUCUGACCU	chr16:448809-449099(+)$1	290	140	166	7.4518
GCCGGCGGGACCCAGGCCCGGGAGGC	chr1:227922424-227922678(-)$1	254	4	30	11.2664
ACUUCCCAUUGGUGAGAUGUGCAGGU	chr6:42903148-42903412(+)$1	264	52	78	9.5440
gugccauacugAGGUCAGGCUGGGGC	chr16:88783526-88783737(-)$1	211	0	26	8.5640
CGCAGUGUCCCGUGUGGGGCUUGUCU	chr17:63533182-63533433(-)$1	251	9	35	9.5763
CUCCGAUGGAACAGUUUCCAGCUGUC	chr13:33701580-33701845(-)$1	265	166	192	9.9619
ACAUGAAACAAGCCAUUGUGGACAAG	chr3:128973663-128973917(+)$1	254	192	218	12.0580
UCCCUUCUGCGCUGCCGCAGGGAGGC	chr16:67143813-67144061(+)$1	248	214	240	12.6306
CUCUCUCCAGGCAUCCGUGGGCUCUG	chr12:133143906-133144207(+)$1	301	150	176	9.8037
GGUGUGGCCCAGAGGUGGGUCCAUUC	chr17:4576645-4576954(-)$1	309	103	129	10.3556
GACCUGAGGGCUUGUGUCUUACAGGU	chr4:17606043-17606315(+)$1	272	143	169	11.0171
GUUCCGUGAGGAUGACUUCCGGAGAG	chr12:57627591-57627858(+)$1	267	219	245	13.1062
UCGCUUUGUGGAGAACCGCUGGUGUC	chr8:144669015-144669276(-)$1	261	127	153	13.1483
AAGGGGCUGGUUGUGGCCAUGGUGCC	chr3:50255787-50256029(+)$1	242	59	85	11.2275
AGCGGGACGGCGCGUGCCGGCUUGCG	chr20:61917564-61917813(+)$1	249	57	83	13.0661
AUCAUCCGCAGUUUCCUGCUGAAGGU	chr11:821498-821747(+)$1	249	218	244	11.7955
CCUUUUUUUGCAGUUGUUAUUGAAGA	chr1:20810119-20810390(-)$1	271	165	191	8.6799
CCCUUCUGUCUCCCUAGGCAAGAGGC	chr8:145112134-145112415(-)$1	281	175	201	10.2492
GGGAAUUCAUGAUCACAUUUCCCUAC	chr19:5082230-5082477(+)$1	247	163	189	10.5865
CUGACUUUGGGCUGGCCCGCGGCGUC	chr5:176523098-176523397(+)$1	299	23	49	12.2167
UGUGCUGGAACGGGAGUUUCAGCGGG	chr1:110168764-110169037(+)$1	273	230	256	9.1154
CGUCGGCACUGCUGGCGGUGACUGGG	chr17:40717315-40717586(+)$1	271	135	161	10.2938
CGCGCAGGAGCUGCUGCAGGUGCGGG	chr19:2427239-2427491(-)$1	252	61	87	8.6314
CCAGCCUCGGGCCUCCCCGUGCGCCU	chr9:130863410-130863695(+)$1	285	121	147	12.7750
GGCAGCGAGAGUUGACUCUGGGUGUU	chr1:36927678-36927935(-)$1	257	120	146	12.4989
GCGGGUGCUGGGAGCUCGGCCCUGCU	chr17:48561904-48562171(+)$1	267	113	139	11.1515
UAGCUACAAGCCCGUGUUUGUGACUG	chr7:127721266-127721510(+)$1	244	216	242	8.5531
GGUCAUGUCUGGAGACGGGCUGAUGC	chr17:74382325-74382568(+)$1	243	40	66	10.5497
GCUCUGAGCCUACUGGGGCACAGGCC	chr19:48892927-48893163(-)$1	236	131	157	13.0370
GAGGCCCGGAAGCGGUUCCUGGGCCC	chr11:821477-821698(+)$1	221	185	211	10.2038
GCCUUGUCUCUCUCCAGGAAGGCUAC	chr16:57261097-57261373(+)$1	276	139	165	8.0565
CAUGGCACAGCUCCAGCUGGCCUGGC	chr14:23345732-23345994(+)$1	262	49	75	12.2561
CUGCGACCAUUCCCAGAUGAUGUCUG	chr17:41607272-41607528(-)$1	256	228	254	10.2191
GGCCUGGUGCUCUGCGGUCACCUGGC	chr20:60736295-60736554(+)$1	259	20	46	9.1253
CCUGGCUGGGCCACUGCCCUCUGUCC	chr20:62365848-62366208(+)$1	360	111	137	11.4466
AGGCCCCUGGGCCCAGCCCUGGCUUG	chr16:4564569-4564848(-)$1	279	107	133	11.3749
ggcggcgaagggggaccugguugcgg	chr12:133463819-133464108(-)$1	289	6	32	10.8099
AAGACGAGUUCUCAAAGAGUUGGGUU	chr1:1330800-1331032(-)$1	232	204	230	9.1044
UGUCUGCAGGAAUGGUCCUCGUCCGA	chr20:60589656-60589928(-)$1	272	156	182	11.5197
GGCCUGAGCACUGCCGUGUAUCAGCG	chr11:598186-598466(+)$1	280	246	272	12.1573
GGACCCUCCGUGAGAAUGGGGAUAUG	chr8:30416232-30416500(+)$1	268	103	129	11.1444
AGUGACCUCGCAUGUUGUGCUUGCUG	chr6:42852200-42852475(+)$1	275	71	97	9.4593
UGCCCAAGCGCCAGAGGUGACCUAUG	chr17:73897251-73897514(-)$1	263	162	188	9.7605
UUGCCUUGUCUGUCAAGAUCCGCAGU	chr1:36923482-36923745(-)$1	263	166	192	13.6816
CCUCGGCAGUCAUGGGACUGAUUGAG	chr1:53370663-53370918(-)$1	255	159	185	10.2070
CCCAGAGCUCCAUCAGGACCCCUGUG	chr20:31601463-31601711(+)$1	248	211	237	10.0029

#DB
((((...((((....))))..)))))	chr19:6697773-6698006(-)$1	1	190	216	11.9759
(((((.(((((....))))).)))))	chr16:89337215-89337492(-)$1	1	220	246	9.5630
(((((((((((....)))).)).)))	chr10:100183544-100183824(-)$1	1	86	112	10.5009
((((...((((......)))))))))	chr16:89795474-89795740(+)$1	1	61	87	10.2398
(((((..((((....))))..)))))	chr3:12954956-12955215(-)$1	1	104	130	13.7232
..(((((((((....)))))....))	chr6:35446387-35446654(-)$1	1	175	201	10.3750
(((((...((((...))))..)))))	chr1:24122660-24122930(-)$1	1	54	80	9.4434
(((((..((((....))))...))))	chrX:152969486-152969750(-)$1	1	7	33	14.1182
(((((..((((....)))))))))))	chr20:62368717-62368935(+)$1	1	187	213	13.5777
((((.(((.(((...)))))).))))	chr16:448809-449099(+)$1	1	140	166	7.4518
(((..((((.(....)))))...)))	chr1:227922424-227922678(-)$1	1	4	30	11.2664
((((.(((((.....)))).).))))	chr6:42903148-42903412(+)$1	1	52	78	9.5440
((.(((..(((....)))..))).))	chr16:88783526-88783737(-)$1	1	0	26	8.5640
(((((.(((((....)))))))))((	chr17:63533182-63533433(-)$1	1	9	35	9.5763
(.....(((((....)))))...)))	chr13:33701580-33701845(-)$1	1	166	192	9.9619
...((..((((....))))...)).)	chr3:128973663-128973917(+)$1	1	192	218	12.0580
(.(((((((((....)))).))))).	chr16:67143813-67144061(+)$1	1	214	240	12.6306
(....((((.(....).))))....)	chr12:133143906-133144207(+)$1	1	150	176	9.8037
(((((((((((....)))).))))((	chr17:4576645-4576954(-)$1	1	103	129	10.3556
(((((((((((....))))).)))))	chr4:17606043-17606315(+)$1	1	143	169	11.0171
.(((((.((((....))))))))).)	chr12:57627591-57627858(+)$1	1	219	245	13.1062
.((((..((((....)))).)))).)	chr8:144669015-144669276(-)$1	1	127	153	13.1483
..(((((((((....))))....)))	chr3:50255787-50256029(+)$1	1	59	85	11.2275
((((((.((((....)))).))))).	chr20:61917564-61917813(+)$1	1	57	83	13.0661
(((.((.((((....)))).)).)))	chr11:821498-821747(+)$1	1	218	244	11.7955
.((((....((....))....)))).	chr1:20810119-20810390(-)$1	1	165	191	8.6799
.((((.(((((....))))).)))).	chr8:145112134-145112415(-)$1	1	175	201	10.2492
(((((...(((....))))))))..)	chr19:5082230-5082477(+)$1	1	163	189	10.5865
(((....((((....)))))))))))	chr5:176523098-176523397(+)$1	1	23	49	12.2167
(.(((((((((....))))))))).)	chr1:110168764-110169037(+)$1	1	230	256	9.1154
(.(((((((((....))))).)))).	chr17:40717315-40717586(+)$1	1	135	161	10.2938
(.((((...((....))...)))).)	chr19:2427239-2427491(-)$1	1	61	87	8.6314
((((((.((((....)))).).).))	chr9:130863410-130863695(+)$1	1	121	147	12.7750
((((.(.((((....)))).).))).	chr1:36927678-36927935(-)$1	1	120	146	12.4989
(((((.(((((....)))))))))).	chr17:48561904-48562171(+)$1	1	113	139	11.1515
(((.(((((((....))))))).)))	chr7:127721266-127721510(+)$1	1	216	242	8.5531
(((((.(((((....))))))))).)	chr17:74382325-74382568(+)$1	1	40	66	10.5497
((.(((.((((....)))).))))))	chr19:48892927-48893163(-)$1	1	131	157	13.0370
..(((((((((....)))).))))).	chr11:821477-821698(+)$1	1	185	211	10.2038
(((((.(((......))))))))(((	chr16:57261097-57261373(+)$1	1	139	165	8.0565
((.(((.((((....)))))))))))	chr14:23345732-23345994(+)$1	1	49	75	12.2561
).(((((((((....))))..))).)	chr17:41607272-41607528(-)$1	1	228	254	10.2191
((((.((((((....)).)))).)))	chr20:60736295-60736554(+)$1	1	20	46	9.1253
)))))))((((....))))(((((((	chr20:62365848-62366208(+)$1	1	111	137	11.4466
(((((...((((...)))).))))))	chr16:4564569-4564848(-)$1	1	107	133	11.3749
.(((((..(((....))).))))).)	chr12:133463819-133464108(-)$1	1	6	32	10.8099
((..(((.((((...)))))))..))	chr1:1330800-1331032(-)$1	1	204	230	9.1044
((..((.((((....))))))..)))	chr20:60589656-60589928(-)$1	1	156	182	11.5197
(((((((((((....)))).)))).)	chr11:598186-598466(+)$1	1	246	272	12.1573
....((.((((....))))))...))	chr8:30416232-30416500(+)$1	1	103	129	11.1444
(((((...((((...)))).))))))	chr6:42852200-42852475(+)$1	1	71	97	9.4593
((((((.(((((...)))).)...))	chr17:73897251-73897514(-)$1	1	162	188	9.7605
((((...((((....))))..)))))	chr1:36923482-36923745(-)$1	1	166	192	13.6816
.((((((((((....))))).)))))	chr1:53370663-53370918(-)$1	1	159	185	10.2070
(((((.(.(((....))).).))).)	chr20:31601463-31601711(+)$1	1	211	237	10.0029

#PSSM
e : 0.29	d : 0.16	f : 0.12	c : 0.09	! : 0.05	: : 0.05	" : 0.03	b : 0.03	# : 0.03	a : 0.03	E : 0.01	g : 0.01	G : 0.01	[ : 0.01	
e : 0.34	d : 0.23	f : 0.09	[ : 0.07	c : 0.07	: : 0.05	" : 0.03	# : 0.03	b : 0.01	$ : 0.01	G : 0.01	
e : 0.34	d : 0.25	f : 0.09	c : 0.09	[ : 0.05	# : 0.03	! : 0.03	$ : 0.01	" : 0.01	G : 0.01	i : 0.01	b : 0.01	
e : 0.34	d : 0.23	c : 0.10	f : 0.09	! : 0.05	# : 0.05	b : 0.03	[ : 0.03	$ : 0.01	i : 0.01	
e : 0.27	d : 0.18	c : 0.12	b : 0.09	f : 0.07	[ : 0.07	" : 0.05	# : 0.03	! : 0.01	$ : 0.01	i : 0.01	a : 0.01	g : 0.01	
d : 0.14	e : 0.14	" : 0.12	[ : 0.12	c : 0.12	b : 0.09	! : 0.09	a : 0.05	# : 0.03	$ : 0.01	i : 0.01	g : 0.01	
e : 0.23	[ : 0.18	" : 0.14	! : 0.12	d : 0.10	c : 0.09	# : 0.03	b : 0.01	i : 0.01	g : 0.01	a : 0.01	
d : 0.54	e : 0.18	" : 0.09	c : 0.03	! : 0.03	[ : 0.03	# : 0.01	i : 0.01	g : 0.01	a : 0.01	
d : 0.63	e : 0.18	c : 0.09	[ : 0.01	# : 0.01	i : 0.01	" : 0.01	g : 0.01	
d : 0.58	e : 0.18	c : 0.09	b : 0.05	[ : 0.03	i : 0.01	g : 0.01	o : 0.01	
d : 0.56	e : 0.18	c : 0.09	b : 0.05	a : 0.03	n : 0.01	i : 0.01	g : 0.01	o : 0.01	
m : 0.83	d : 0.09	o : 0.03	c : 0.01	n : 0.01	
m : 0.83	l : 0.10	o : 0.03	n : 0.01	
m : 0.83	l : 0.10	o : 0.03	n : 0.01	
m : 0.83	l : 0.10	o : 0.03	n : 0.01	
d : 0.56	e : 0.18	c : 0.10	b : 0.05	a : 0.03	o : 0.01	i : 0.01	g : 0.01	
d : 0.58	e : 0.18	c : 0.10	b : 0.05	o : 0.01	] : 0.01	i : 0.01	g : 0.01	
d : 0.61	e : 0.18	c : 0.10	4 : 0.01	i : 0.01	3 : 0.01	g : 0.01	] : 0.01	
d : 0.63	e : 0.21	] : 0.03	c : 0.01	2 : 0.01	4 : 0.01	i : 0.01	3 : 0.01	g : 0.01	
e : 0.27	] : 0.27	2 : 0.10	d : 0.10	3 : 0.05	c : 0.05	4 : 0.03	b : 0.03	i : 0.01	g : 0.01	a : 0.01	
d : 0.20	e : 0.18	] : 0.10	2 : 0.09	c : 0.09	b : 0.07	3 : 0.07	a : 0.07	4 : 0.05	i : 0.01	g : 0.01	f : 0.01	
e : 0.27	d : 0.21	3 : 0.10	c : 0.10	f : 0.07	] : 0.07	4 : 0.05	b : 0.03	i : 0.01	g : 0.01	2 : 0.01	
e : 0.30	d : 0.23	c : 0.09	f : 0.07	] : 0.07	3 : 0.07	4 : 0.05	2 : 0.03	b : 0.01	i : 0.01	a : 0.01	
e : 0.34	d : 0.27	f : 0.10	c : 0.09	4 : 0.03	] : 0.03	2 : 0.03	3 : 0.03	b : 0.01	i : 0.01	
e : 0.30	d : 0.23	] : 0.18	f : 0.10	c : 0.09	b : 0.03	4 : 0.01	2 : 0.01	
e : 0.30	d : 0.21	f : 0.12	c : 0.10	b : 0.05	] : 0.05	2 : 0.03	a : 0.03	0 : 0.01	3 : 0.01	: : 0.01	

#score	596.9604207687023
#seq	55
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_CDS_m2_run2.txt

#BEAR
cc[eeeeemmmmeeeeeccc	chr12:124143901-124144158(+)$1	257	128	148	14.2271
gggeeeeemmmmeeeee333	chr2:47637256-47637510(+)$1	254	167	187	14.6536
ccceeeeemmmmeeeee]cc	chr19:2227017-2227314(+)$1	297	139	159	14.8354
ccceeeeemmmmeeeee]cc	chr20:44515676-44515971(-)$1	295	68	88	14.8354
b[a[eeeeellleeeee]a]	chr22:38209297-38209542(+)$1	245	184	204	12.8229
dddeeeeemmmmeeeee]dd	chr17:80007640-80007894(-)$1	254	52	72	13.7237
d"""eeeeellleeeee333	chr2:203964167-203964470(+)$1	303	104	124	12.4955
cceeeeennnnneeeee]cc	chr9:123287192-123287466(-)$1	274	108	128	11.1665
[a[eeeeemmmmeeeee]a]	chr20:2819563-2819833(-)$1	270	10	30	15.6589
e[aeeeeemmmmeeeee]a]	chr13:113980077-113980362(-)$1	285	123	143	15.3018
#a[eeeeemmmmeeeee]a2	chr16:28847426-28847662(+)$1	236	34	54	15.4712
cc[eeeeemmmmeeeee]cc	chr17:56082934-56083222(-)$1	288	227	247	15.2292
f[a!!cccmmmmccc333a]	chr17:4692816-4693076(+)$1	260	95	115	9.0664
ccceeeeemmmmeeeee]cc	chr22:37407260-37407535(-)$1	275	178	198	14.8354
!a[eeeeemmmmeeeee]a2	chr17:79663451-79663712(+)$1	261	220	240	15.5700
ee[eeeeemmmmeeeeeeee	chr14:21967359-21967672(-)$1	313	128	148	13.2248

#otherMatches

#Seq PSSM
CGAGUUUGGCAGCAAGCCGC	chr12:124143901-124144158(+)$1	257	128	148	14.2271
UCUUGAGGCUCUCCUCAUCC	chr2:47637256-47637510(+)$1	254	167	187	14.6536
gccccggcccccgccggAGG	chr19:2227017-2227314(+)$1	297	139	159	14.8354
gacaguccgcuggggCUGGU	chr20:44515676-44515971(-)$1	295	68	88	14.8354
CCAGAGGACGCAGUCCUGUC	chr22:38209297-38209542(+)$1	245	184	204	12.8229
GGUUCUGCCUCAGCAGAGGC	chr17:80007640-80007894(-)$1	254	52	72	13.7237
UUUCAGACCAAAGGUUUCCU	chr2:203964167-203964470(+)$1	303	104	124	12.4955
AGGUUGAAGAACUUAACUCU	chr9:123287192-123287466(-)$1	274	108	128	11.1665
GUGGCCAUGUCAGUGGUGGG	chr20:2819563-2819833(-)$1	270	10	30	15.6589
GUGGAGGUGAGCGCCUCACU	chr13:113980077-113980362(-)$1	285	123	143	15.3018
GCGCCUGGAUUUCCAGGAGG	chr16:28847426-28847662(+)$1	236	34	54	15.4712
GAUCUUUCAAUGGAAAGUUC	chr17:56082934-56083222(-)$1	288	227	247	15.2292
UGAAACCCGAAGGGGAUGUG	chr17:4692816-4693076(+)$1	260	95	115	9.0664
CGGGCCAUAUCCGUGGUGCC	chr22:37407260-37407535(-)$1	275	178	198	14.8354
GCGCCUGCAGGAGCAGGAGA	chr17:79663451-79663712(+)$1	261	220	240	15.5700
UAAGGUAAUCUGUUAUCUGU	chr14:21967359-21967672(-)$1	313	128	148	13.2248

#DB
((.(((((....))))))))	chr12:124143901-124144158(+)$1	1	128	148	14.2271
((((((((....)))))...	chr2:47637256-47637510(+)$1	1	167	187	14.6536
((((((((....))))).))	chr19:2227017-2227314(+)$1	1	139	159	14.8354
((((((((....))))).))	chr20:44515676-44515971(-)$1	1	68	88	14.8354
(.(.(((((...))))).).	chr22:38209297-38209542(+)$1	1	184	204	12.8229
((((((((....))))).))	chr17:80007640-80007894(-)$1	1	52	72	13.7237
(...(((((...)))))...	chr2:203964167-203964470(+)$1	1	104	124	12.4955
(((((((.....))))).))	chr9:123287192-123287466(-)$1	1	108	128	11.1665
.(.(((((....))))).).	chr20:2819563-2819833(-)$1	1	10	30	15.6589
(.((((((....))))).).	chr13:113980077-113980362(-)$1	1	123	143	15.3018
.(.(((((....))))).).	chr16:28847426-28847662(+)$1	1	34	54	15.4712
((.(((((....))))).))	chr17:56082934-56083222(-)$1	1	227	247	15.2292
(.(..(((....)))...).	chr17:4692816-4693076(+)$1	1	95	115	9.0664
((((((((....))))).))	chr22:37407260-37407535(-)$1	1	178	198	14.8354
.(.(((((....))))).).	chr17:79663451-79663712(+)$1	1	220	240	15.5700
((.(((((....))))))))	chr14:21967359-21967672(-)$1	1	128	148	13.2248

#PSSM
c : 0.37	d : 0.12	e : 0.12	g : 0.06	b : 0.06	[ : 0.06	# : 0.06	f : 0.06	! : 0.06	
c : 0.37	[ : 0.18	a : 0.18	g : 0.06	d : 0.06	" : 0.06	e : 0.06	
[ : 0.37	c : 0.18	a : 0.18	g : 0.06	d : 0.06	" : 0.06	e : 0.06	
e : 0.81	[ : 0.06	" : 0.06	! : 0.06	
e : 0.93	! : 0.06	
e : 0.93	c : 0.06	
e : 0.93	c : 0.06	
e : 0.87	n : 0.06	c : 0.06	
m : 0.81	e : 0.12	n : 0.06	
m : 0.81	l : 0.12	n : 0.06	
m : 0.81	l : 0.12	n : 0.06	
m : 0.81	l : 0.12	n : 0.06	
e : 0.93	c : 0.06	
e : 0.93	c : 0.06	
e : 0.93	c : 0.06	
e : 0.93	3 : 0.06	
e : 0.93	3 : 0.06	
] : 0.68	3 : 0.18	c : 0.06	e : 0.06	
c : 0.37	a : 0.37	3 : 0.12	d : 0.06	e : 0.06	
c : 0.37	] : 0.25	3 : 0.12	2 : 0.12	d : 0.06	e : 0.06	

#score	223.11860669408748
#seq	16
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_CDS_m3_run2.txt

#BEAR
[ggggggg!!bboooooobb22ggggggg]	chr2:232319833-232320057(-)$1	224	8	38	12.8337
ffff[bb!!cccnnnnnccc22bb]fffff	chr17:62498192-62498426(-)$1	234	53	83	12.7212
ccc[eeeee[bbnnnnnbb]eeeee]ccc2	chr4:38932986-38933337(+)$1	351	72	102	11.9353
!ggggggg[bboooooobb]gggggggggg	chr12:76453484-76453738(-)$1	254	18	48	11.3892
ddd!!a[a[cccnnnnncccaa333ddddd	chr10:101590002-101590268(+)$1	266	104	134	13.7228
====$$$$$cccmmmmccc4444=======	chr2:136528118-136528404(+)$1	286	233	263	11.0947
c####ccc[cccmmmmccc]ccc333ccc]	chr2:170667637-170667904(+)$1	267	15	45	10.0545
:cccccc[ddddnnnnndddd]ccc]ccc:	chr2:232327812-232328018(-)$1	206	95	125	10.6767
==========[annnnna]==========2	chr1:93306079-93306297(+)$1	218	106	136	14.9805
hhhhh!!a!!bboooooobb22a22hhhhh	chr6:27806340-27806639(+)$1	299	232	262	10.7269
gggggg"""cccnnnnnccc333ggggggg	chr6:33170238-33170574(+)$1	336	254	284	16.0697
[bb!!gggggggnnnnnggggggg4444bb	chr1:24021046-24021294(+)$1	248	60	90	12.1862
ccc####a!!cccmmmmccc22a333ccc3	chr12:6711039-6711352(-)$1	313	204	234	11.5217
d[eeeee"""bbnnnnnbb4444eeeee]d	chr17:47394353-47394747(-)$1	394	94	124	13.6249
f!!ccc!!ddddnnnnndddd]ccc22fff	chr4:83784366-83784637(-)$1	271	184	214	12.2982
!!cccgggggggnnnnnggggggg]ccc33	chr2:232576555-232576782(+)$1	227	23	53	13.3188
========[cccnnnnnccc22========	chr6:163955938-163956223(+)$1	285	202	232	16.0363
fffiiiiiiiiiooooooiiiiiiiii333	chr9:100777545-100777750(+)$1	205	21	51	12.0349
:ggggggg!!bbnnnnnbb22ggggggg::	chr8:124383041-124383288(-)$1	247	176	206	11.5959
c[==========nnnnn==========]cc	chr2:242192704-242192951(-)$1	247	24	54	15.2940
bb[gggggggbboooooobb]ggggggg]b	chr2:232577123-232577326(+)$1	203	15	45	11.0495
"dddd####cccnnnnnccc333dddd>>>	chr10:120809216-120809517(-)$1	301	131	161	14.2658
============mmmm============ff	chr20:39709724-39709986(+)$1	262	166	196	11.1947
"dddd"""a[bbnnnnnbba22dddd]ccc	chr6:4032681-4033029(+)$1	348	233	263	14.0057
gggggg"""cccooooooccc4444ggggg	chr10:70532708-70532957(+)$1	249	135	165	13.3092
i!!iiiiiiiiinnnnniiiiiiiii4444	chr10:120809929-120810140(-)$1	211	131	161	14.2973
========[ddddllldddd22========	chr6:79700515-79700803(-)$1	288	56	86	11.3149
d[eeeee[ddddnnnnndddd22eeeeedd	chr1:226349132-226349431(-)$1	299	25	55	10.9278
"dddd####cccnnnnnccc333dddd>>>	chr10:120809317-120809600(-)$1	283	214	244	14.2658
:dddd"""a[aooooooa]a4444ddddee	chr2:27607787-27608056(-)$1	269	208	238	10.4953
!!dddd!!ddddnnnnndddd22dddd22a	chr20:3765563-3765887(-)$1	324	281	311	11.8011
cffffffa[cccnnnnnccc]a]ffffff]	chr17:76186950-76187237(+)$1	287	119	149	12.6779
::==========nnnnn==========:FF	chr15:52849250-52849520(-)$1	270	72	102	11.2084
eeeee"""ddddnnnnndddd333eeeeeE	chr2:71361651-71361897(+)$1	246	149	179	11.4435
cc[dddd!!cccnnnnnccc22dddd]ccc	chr7:105148540-105148846(-)$1	306	242	272	13.9598
##a[ccc"""bbmmmmbb333ccc]a333e	chrX:70517191-70517409(+)$1	218	108	138	10.5851
i!!ccc####bboooooobb22ccc22iii	chr1:245027133-245027439(-)$1	306	177	207	12.9655
fffiiiiiiiiiooooooiiiiiiiii333	chr9:100777552-100777822(+)$1	270	14	44	12.0349
cc[ccc####ccclllccc4444cccccc2	chr2:96953065-96953372(-)$1	307	172	202	11.9950
c[a[ccc[bbbbnnnnnbb]bb22ccca]c	chr19:11558252-11558534(+)$1	282	40	70	12.3347
======####bbnnnnnbb4444=======	chr20:39721011-39721253(+)$1	242	60	90	16.3619
Cggggggg[a[annnnna]agggggggccc	chr19:36211168-36211543(+)$1	375	235	265	12.6708
======"""cccnnnnnccc==========	chr16:24761943-24762236(+)$1	293	28	58	16.0826
ee[a"""a[cccnnnnnccc]a333a]eee	chr1:52305875-52306211(-)$1	336	210	240	14.5759
ccc[a[ffffffnnnnnffffff333a]cc	chr2:233421033-233421341(+)$1	308	24	54	11.4971
c####gggggggoooooogggggggcccee	chr17:62498464-62498719(-)$1	255	42	72	10.9175
dddd[gggggggnnnnnggggggg]dddd]	chr14:31058538-31058802(+)$1	264	17	47	11.9436
cc[ffffff[bbnnnnnbb333ffffff]c	chr9:100774602-100774816(+)$1	214	146	176	12.7709
bbbccc####bboooooobb333ccc]bb]	chr3:121412778-121413100(-)$1	322	87	117	12.3703
hhhhhbb"""bbnnnnnbb4444bb]hhhh	chr2:198281458-198281736(-)$1	278	175	205	12.2757
f[a[dddd[cccooooooccc]dddd]a]f	chr3:172064886-172065210(+)$1	324	232	262	10.9157
c"""ccc[ddddnnnnndddd]ccc333cc	chr6:26123922-26124185(-)$1	263	149	179	12.9717
dd####dddd[annnnna]dddd333dddd	chr3:50099370-50099642(+)$1	272	213	243	11.1148
a[dddd[a"""aooooooa22a]dddd]af	chr6:144803244-144803507(+)$1	263	93	123	11.4210
fff[dddd!!bbnnnnnbb22dddd]ffff	chr14:73575974-73576301(+)$1	327	32	62	12.0066

#otherMatches

#Seq PSSM
CGGUUCCUAAUCACUGGGGAGGAGGAGCUU	chr2:232319833-232320057(-)$1	224	8	38	12.8337
AGUUUAAUAACACAACUUGUCUUUUAACUU	chr17:62498192-62498426(-)$1	234	53	83	12.7212
GGGACCUCUGCAGGCCAUGAAGAGGGCUCA	chr4:38932986-38933337(+)$1	351	72	102	11.9353
CCACUGGUUUUAGCUUGGAUGCCAGUGUUU	chr12:76453484-76453738(-)$1	254	18	48	11.3892
AUCCAGUGUGGAAGAGAUCCCCGAAGAUGC	chr10:101590002-101590268(+)$1	266	104	134	13.7228
CAGUAGCUUUAGAUUACUACCAGACUGUGC	chr2:136528118-136528404(+)$1	286	233	263	11.0947
AAAAAAGUUCUUUACAGAGUGCUCAAUUGU	chr2:170667637-170667904(+)$1	267	15	45	10.0545
CAGUGGAGAAGAGGUAAUUUUAUCCAACUU	chr2:232327812-232328018(-)$1	206	95	125	10.6767
AAAAAGAAGAGGUAUGUCGUCUUUUUUUUU	chr1:93306079-93306297(+)$1	218	106	136	14.9805
UGCUGAAGCAGGUCCACCCCGACACCGGUA	chr6:27806340-27806639(+)$1	299	232	262	10.7269
GGUGAUAAAUUUGGGCAAGGGACAUCAUCA	chr6:33170238-33170574(+)$1	336	254	284	16.0697
UUGAAGAUGACAAGGAAUGUUAUUGCUGCA	chr1:24021046-24021294(+)$1	248	60	90	12.1862
aggaUGAUGAUGAUGAUUCAAAGGUGCCUG	chr12:6711039-6711352(-)$1	313	204	234	11.5217
UGUUCUUAAGACAAGCAGUGAGGAGGAAGA	chr17:47394353-47394747(-)$1	394	94	124	13.6249
UUAGAUGGCAUGCUCUUUAUGAAUCAUACU	chr4:83784366-83784637(-)$1	271	184	214	12.2982
GGCCUGUUUUCUGUCGAGGAGAAUGAGGAA	chr2:232576555-232576782(+)$1	227	23	53	13.3188
AAUUAUUGGUACCUGCAGUAAGUAAUAAUU	chr6:163955938-163956223(+)$1	285	202	232	16.0363
GUUGUUGUUGCCUCCAUUGGCAAUAAUCUA	chr9:100777545-100777750(+)$1	205	21	51	12.0349
GAUUGAAUUUAAGAACUUUUUAUUUAGUAG	chr8:124383041-124383288(-)$1	247	176	206	11.5959
GUUUUGGUGUGGUAGGUUCACAUCGAGUUC	chr2:242192704-242192951(-)$1	247	24	54	15.2940
UUGAUUCUCUCCAGGUGAGGAAGAGGAUGG	chr2:232577123-232577326(+)$1	203	15	45	11.0495
AGUUGGAAAUUGAAGAACGAGAACGGCGUA	chr10:120809216-120809517(-)$1	301	131	161	14.2658
AGACUUAGGUCCUUUGGGGCUUGAGUUUGG	chr20:39709724-39709986(+)$1	262	166	196	11.1947
UGGGAGAAGAGCCAAGAGCCGAUCCUUAGA	chr6:4032681-4033029(+)$1	348	233	263	14.0057
GAUGAAGAAGAUGGUAUGAUUGAAAUUUAU	chr10:70532708-70532957(+)$1	249	135	165	13.3092
AGGGGUGCUAAUGCAAGGUUGGUGUUAAGA	chr10:120809929-120810140(-)$1	211	131	161	14.2973
UAUGUGUAAAAUUCUAGAUUAAUGCAUAUG	chr6:79700515-79700803(-)$1	288	56	86	11.3149
UAUCUUUGCCUUGUaggaaggaggaagagg	chr1:226349132-226349431(-)$1	299	25	55	10.9278
AGUUGGAAAUUGAAGAACGAGAACGGCGUA	chr10:120809317-120809600(-)$1	283	214	244	14.2658
UCUGGAGGUGGGACAGGCGAGGAACCAGGG	chr2:27607787-27608056(-)$1	269	208	238	10.4953
GACUCUGAUUCAGACAGUGAGGAAGAGgac	chr20:3765563-3765887(-)$1	324	281	311	11.8011
GUCCCAGCCGAUGGGUUGUCCGACUGGGAG	chr17:76186950-76187237(+)$1	287	119	149	12.6779
GAGAAGUAAUUUAUUUGAAAUUAUUUUAGG	chr15:52849250-52849520(-)$1	270	72	102	11.2084
UAAAGAAAGCUUGAAAAGAGUGACCUUUGC	chr2:71361651-71361897(+)$1	246	149	179	11.4435
UUGUGAGUUCUCAUCAAGGGUUCUCGGGAA	chr7:105148540-105148846(-)$1	306	242	272	13.9598
ACUGGAGCUCAGGUAACUUUUCUCGAACAC	chrX:70517191-70517409(+)$1	218	108	138	10.5851
CGACUCGGGCCCGAUGGAGGAGGAGGAGGC	chr1:245027133-245027439(-)$1	306	177	207	12.9655
GUUGUUGUUGCCUCCAUUGGCAAUAAUCUA	chr9:100777552-100777822(+)$1	270	14	44	12.0349
ACGACCUGAAUCAUAAUGAGAUUGGUGUGU	chr2:96953065-96953372(-)$1	307	172	202	11.9950
UUGACGGAGCCCAAGGAGGAGCAGCCGCCA	chr19:11558252-11558534(+)$1	282	40	70	12.3347
AAGGCGAUCACUAAAUGAGGCUGUGCUUUG	chr20:39721011-39721253(+)$1	242	60	90	16.3619
UGUAGCUGAGGAGAUGAUGCCAGCUGCGGA	chr19:36211168-36211543(+)$1	375	235	265	12.6708
AAAUGAAUCUGUAUGCAACAUUAUUUUUAU	chr16:24761943-24762236(+)$1	293	28	58	16.0826
augaguuugaugaugaacaugaugaugauc	chr1:52305875-52306211(-)$1	336	210	240	14.5759
GGUGGCUUUGUUAGGUAAGCAAGAAUUGAC	chr2:233421033-233421341(+)$1	308	24	54	11.4971
CUAUUAUUAGACUUAUUCGUCUAAUGGAAG	chr17:62498464-62498719(-)$1	255	42	72	10.9175
GAGUUUAUUUUCUAAUUGAGAAUAUAUUCA	chr14:31058538-31058802(+)$1	264	17	47	11.9436
AUGAAGGUGGGCCUAAUGCAUGCAUUUUGA	chr9:100774602-100774816(+)$1	214	146	176	12.7709
CCAGAUGAAACAAAAGGAUGAAGAUCUUGA	chr3:121412778-121413100(-)$1	322	87	117	12.3703
CCAGCCUCCAUCAAAACGAAAACGGCGUUG	chr2:198281458-198281736(-)$1	278	175	205	12.2757
UUGCCUGCUGCACAGUAUUGCUGUAGACUA	chr3:172064886-172065210(+)$1	324	232	262	10.9157
AGCCGCAAGGAGAGUUACUCUGUGUACGUG	chr6:26123922-26124185(-)$1	263	149	179	12.9717
UUAAAAUGUUGGAGGUACGAACAGAGGAUA	chr3:50099370-50099642(+)$1	272	213	243	11.1148
GGAACAGAGGGCAAAAGAGGAUGUGUUGCA	chr6:144803244-144803507(+)$1	263	93	123	11.4210
GAUCGGAGUAUUAAAUGAAGCCUUUUAUCA	chr14:73575974-73576301(+)$1	327	32	62	12.0066

#DB
.(((((((..((......))..))))))).	chr2:232319833-232320057(-)$1	1	8	38	12.8337
((((.((..(((.....)))..)).)))))	chr17:62498192-62498426(-)$1	1	53	83	12.7212
(((.(((((.((.....)).))))).))).	chr4:38932986-38933337(+)$1	1	72	102	11.9353
.(((((((.((......)).))))))))))	chr12:76453484-76453738(-)$1	1	18	48	11.3892
(((..(.(.(((.....)))))...)))))	chr10:101590002-101590268(+)$1	1	104	134	13.7228
((((.....(((....)))....)))))))	chr2:136528118-136528404(+)$1	1	233	263	11.0947
(....(((.(((....))).)))...))).	chr2:170667637-170667904(+)$1	1	15	45	10.0545
.((((((.((((.....)))).))).))).	chr2:232327812-232328018(-)$1	1	95	125	10.6767
((((((((((.(.....).)))))))))).	chr1:93306079-93306297(+)$1	1	106	136	14.9805
(((((..(..((......))..)..)))))	chr6:27806340-27806639(+)$1	1	232	262	10.7269
((((((...(((.....)))...)))))))	chr6:33170238-33170574(+)$1	1	254	284	16.0697
.((..(((((((.....)))))))....))	chr1:24021046-24021294(+)$1	1	60	90	12.1862
(((....(..(((....)))..)...))).	chr12:6711039-6711352(-)$1	1	204	234	11.5217
(.(((((...((.....))....))))).)	chr17:47394353-47394747(-)$1	1	94	124	13.6249
(..(((..((((.....)))).)))..)))	chr4:83784366-83784637(-)$1	1	184	214	12.2982
..((((((((((.....))))))).)))..	chr2:232576555-232576782(+)$1	1	23	53	13.3188
((((((((.(((.....)))..))))))))	chr6:163955938-163956223(+)$1	1	202	232	16.0363
((((((((((((......)))))))))...	chr9:100777545-100777750(+)$1	1	21	51	12.0349
.(((((((..((.....))..)))))))..	chr8:124383041-124383288(-)$1	1	176	206	11.5959
(.((((((((((.....)))))))))).))	chr2:242192704-242192951(-)$1	1	24	54	15.2940
((.(((((((((......)).))))))).)	chr2:232577123-232577326(+)$1	1	15	45	11.0495
.((((....(((.....)))...))))...	chr10:120809216-120809517(-)$1	1	131	161	14.2658
((((((((((((....))))))))))))((	chr20:39709724-39709986(+)$1	1	166	196	11.1947
.((((...(.((.....)))..)))).)))	chr6:4032681-4033029(+)$1	1	233	263	14.0057
((((((...(((......)))....)))))	chr10:70532708-70532957(+)$1	1	135	165	13.3092
(..(((((((((.....)))))))))....	chr10:120809929-120810140(-)$1	1	131	161	14.2973
((((((((.((((...))))..))))))))	chr6:79700515-79700803(-)$1	1	56	86	11.3149
(.(((((.((((.....))))..)))))))	chr1:226349132-226349431(-)$1	1	25	55	10.9278
.((((....(((.....)))...))))...	chr10:120809317-120809600(-)$1	1	214	244	14.2658
.((((...(.(......).)....))))((	chr2:27607787-27608056(-)$1	1	208	238	10.4953
..((((..((((.....))))..))))..)	chr20:3765563-3765887(-)$1	1	281	311	11.8011
((((((((.(((.....))).).)))))).	chr17:76186950-76187237(+)$1	1	119	149	12.6779
..((((((((((.....)))))))))).((	chr15:52849250-52849520(-)$1	1	72	102	11.2084
(((((...((((.....))))...))))))	chr2:71361651-71361897(+)$1	1	149	179	11.4435
((.((((..(((.....)))..)))).)))	chr7:105148540-105148846(-)$1	1	242	272	13.9598
..(.(((...((....))...))).)...)	chrX:70517191-70517409(+)$1	1	108	138	10.5851
(..(((....((......))..)))..)))	chr1:245027133-245027439(-)$1	1	177	207	12.9655
((((((((((((......)))))))))...	chr9:100777552-100777822(+)$1	1	14	44	12.0349
((.(((....(((...)))....)))))).	chr2:96953065-96953372(-)$1	1	172	202	11.9950
(.(.(((.((((.....)).))..)))).)	chr19:11558252-11558534(+)$1	1	40	70	12.3347
((((((....((.....))....)))))))	chr20:39721011-39721253(+)$1	1	60	90	16.3619
((((((((.(.(.....).))))))))(((	chr19:36211168-36211543(+)$1	1	235	265	12.6708
((((((...(((.....)))))))))))))	chr16:24761943-24762236(+)$1	1	28	58	16.0826
((.(...(.(((.....))).)...).)))	chr1:52305875-52306211(-)$1	1	210	240	14.5759
(((.(.((((((.....))))))...).))	chr2:233421033-233421341(+)$1	1	24	54	11.4971
(....(((((((......))))))))))))	chr17:62498464-62498719(-)$1	1	42	72	10.9175
((((.(((((((.....))))))).)))).	chr14:31058538-31058802(+)$1	1	17	47	11.9436
((.((((((.((.....))...)))))).)	chr9:100774602-100774816(+)$1	1	146	176	12.7709
((((((....((......))...))).)).	chr3:121412778-121413100(-)$1	1	87	117	12.3703
(((((((...((.....))....)).))))	chr2:198281458-198281736(-)$1	1	175	205	12.2757
(.(.((((.(((......))).)))).).)	chr3:172064886-172065210(+)$1	1	232	262	10.9157
(...(((.((((.....)))).)))...))	chr6:26123922-26124185(-)$1	1	149	179	12.9717
((....((((.(.....).))))...))))	chr3:50099370-50099642(+)$1	1	213	243	11.1148
(.((((.(...(......)..).)))).))	chr6:144803244-144803507(+)$1	1	93	123	11.4210
(((.((((..((.....))..)))).))))	chr14:73575974-73576301(+)$1	1	32	62	12.0066

#PSSM
c : 0.21	= : 0.12	f : 0.10	d : 0.09	: : 0.07	! : 0.05	" : 0.05	[ : 0.03	h : 0.03	g : 0.03	b : 0.03	i : 0.03	e : 0.03	# : 0.01	C : 0.01	a : 0.01	
c : 0.12	d : 0.12	= : 0.12	g : 0.10	[ : 0.10	f : 0.09	! : 0.09	# : 0.05	b : 0.05	h : 0.03	e : 0.03	: : 0.01	" : 0.01	
= : 0.16	d : 0.14	g : 0.10	f : 0.09	c : 0.09	[ : 0.09	# : 0.05	e : 0.05	! : 0.05	a : 0.05	h : 0.03	b : 0.03	" : 0.01	
= : 0.16	d : 0.14	g : 0.12	[ : 0.10	c : 0.10	# : 0.07	f : 0.05	e : 0.05	i : 0.05	! : 0.03	h : 0.03	a : 0.01	" : 0.01	
c : 0.16	d : 0.16	= : 0.14	g : 0.12	e : 0.07	# : 0.07	i : 0.05	[ : 0.03	! : 0.03	h : 0.03	f : 0.03	$ : 0.01	" : 0.01	a : 0.01	
g : 0.20	c : 0.16	= : 0.14	d : 0.09	# : 0.07	" : 0.07	e : 0.05	i : 0.05	b : 0.03	f : 0.03	a : 0.01	$ : 0.01	! : 0.01	[ : 0.01	
g : 0.16	" : 0.12	# : 0.12	= : 0.10	c : 0.09	d : 0.07	e : 0.05	! : 0.05	i : 0.05	f : 0.05	b : 0.03	[ : 0.03	$ : 0.01	
g : 0.16	" : 0.16	a : 0.10	= : 0.10	# : 0.10	! : 0.07	[ : 0.07	i : 0.05	d : 0.05	f : 0.03	e : 0.01	$ : 0.01	c : 0.01	
[ : 0.16	! : 0.12	d : 0.12	" : 0.12	# : 0.10	g : 0.09	= : 0.07	i : 0.05	a : 0.03	f : 0.03	e : 0.01	$ : 0.01	b : 0.01	
c : 0.25	d : 0.14	! : 0.09	g : 0.09	[ : 0.07	= : 0.07	" : 0.07	# : 0.07	i : 0.05	b : 0.03	a : 0.01	f : 0.01	
b : 0.29	c : 0.29	d : 0.12	g : 0.07	[ : 0.05	i : 0.05	= : 0.05	a : 0.01	f : 0.01	" : 0.01	
c : 0.29	b : 0.27	d : 0.12	a : 0.07	g : 0.07	i : 0.05	= : 0.05	o : 0.03	f : 0.01	
n : 0.63	o : 0.23	m : 0.07	c : 0.03	d : 0.01	
n : 0.63	o : 0.23	m : 0.09	l : 0.03	
n : 0.63	o : 0.23	m : 0.09	l : 0.03	
n : 0.63	o : 0.23	m : 0.09	l : 0.03	
n : 0.63	o : 0.23	c : 0.05	m : 0.01	= : 0.01	d : 0.01	b : 0.01	
c : 0.25	o : 0.20	b : 0.20	d : 0.12	a : 0.07	g : 0.05	= : 0.05	i : 0.01	f : 0.01	
c : 0.29	b : 0.27	d : 0.12	] : 0.07	g : 0.07	i : 0.05	= : 0.05	3 : 0.01	f : 0.01	a : 0.01	
c : 0.23	d : 0.14	b : 0.09	4 : 0.09	] : 0.07	= : 0.07	g : 0.07	i : 0.05	2 : 0.05	a : 0.05	3 : 0.03	f : 0.01	
2 : 0.21	d : 0.12	g : 0.10	4 : 0.10	3 : 0.10	= : 0.09	c : 0.05	i : 0.05	] : 0.05	e : 0.01	a : 0.01	b : 0.01	f : 0.01	
2 : 0.20	g : 0.14	4 : 0.12	3 : 0.10	= : 0.09	a : 0.07	] : 0.07	i : 0.05	c : 0.03	d : 0.03	e : 0.01	b : 0.01	f : 0.01	
g : 0.16	3 : 0.12	4 : 0.12	= : 0.12	c : 0.10	d : 0.09	i : 0.05	2 : 0.05	a : 0.03	] : 0.03	f : 0.03	b : 0.01	e : 0.01	
g : 0.18	= : 0.16	d : 0.14	3 : 0.12	c : 0.12	e : 0.05	i : 0.05	b : 0.03	2 : 0.03	4 : 0.03	f : 0.03	
= : 0.16	d : 0.16	g : 0.12	c : 0.12	3 : 0.10	] : 0.07	e : 0.07	i : 0.05	4 : 0.03	f : 0.03	2 : 0.01	b : 0.01	
d : 0.18	= : 0.16	g : 0.12	3 : 0.09	c : 0.09	] : 0.07	f : 0.05	e : 0.05	i : 0.05	2 : 0.03	a : 0.03	h : 0.01	4 : 0.01	
= : 0.16	c : 0.14	d : 0.14	g : 0.12	] : 0.09	f : 0.07	e : 0.05	h : 0.03	4 : 0.03	2 : 0.03	i : 0.03	3 : 0.03	a : 0.01	
c : 0.18	= : 0.12	g : 0.10	f : 0.09	d : 0.07	e : 0.07	3 : 0.07	] : 0.05	h : 0.03	4 : 0.03	> : 0.03	a : 0.03	2 : 0.01	: : 0.01	i : 0.01	b : 0.01	
c : 0.20	= : 0.10	f : 0.09	] : 0.09	g : 0.07	d : 0.07	3 : 0.07	e : 0.07	h : 0.03	b : 0.03	> : 0.03	: : 0.01	4 : 0.01	2 : 0.01	F : 0.01	i : 0.01	a : 0.01	
c : 0.14	f : 0.10	] : 0.09	= : 0.09	d : 0.07	3 : 0.07	e : 0.07	2 : 0.05	g : 0.05	: : 0.03	h : 0.03	b : 0.03	> : 0.03	4 : 0.01	a : 0.01	F : 0.01	E : 0.01	i : 0.01	

#score	690.147366617922
#seq	55
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF792WPY_DDX24_transcript_m3_run2.txt

#BEAR
cc!!bbqqqqqqqqbb22cc	chr1:22216374-22216593(-)$1	219	186	206	14.0796
f!!cccqqqqqqqqccc444	chr3:184044956-184045310(+)$1	354	55	75	15.1084
bbddddqqqqqqqqdddd:c	chr1:981009-981314(+)$1	305	211	231	12.6138
gggg[aqqqqqqqqaggggg	chr1:40531786-40531999(+)$1	213	190	210	14.4126
[eeeeeqqqqqqqqeeeeec	chr22:31985337-31985610(+)$1	273	68	88	14.0863
"eeeeeqqqqqqqqeeeee6	chr16:50332714-50332935(+)$1	221	177	197	13.6426
f"""bbqqqqqqqqbb4444	chr16:239206-239439(-)$1	233	86	106	14.6396
!eeeeeqqqqqqqqeeeeec	chr2:130865481-130865740(-)$1	259	101	121	14.0966
dd[cccqqqqqqqqccc]dd	chr2:74753708-74753946(-)$1	238	2	22	14.1034
e!!cccqqqqqqqqccc22e	chr7:930526-930794(+)$1	268	55	75	14.6478
!!ddddqqqqqqqqdddd22	chr6:151206673-151206907(+)$1	234	17	37	14.2290
b[ddddqqqqqqqqdddd]b	chr6:43040509-43040803(+)$1	294	66	86	13.9019
iiiiiiqqqqqqqqiiiiii	chr17:17723226-17723476(-)$1	250	138	158	14.1975
ffffbbqqqqqqqqbb]fff	chr15:64004894-64005119(-)$1	225	87	107	14.2819
!!ddddqqqqqqqqdddd22	chr17:78343211-78343572(+)$1	361	45	65	14.2290
[eeeeeqqqqqqqqeeeeed	chr12:69120263-69120496(+)$1	233	25	45	13.9260
eeddddqqqqqqqqddddee	chr3:14509549-14509807(+)$1	258	152	172	13.7348
$$ddddqqqqqqqqdddd33	chr6:90409685-90409897(-)$1	212	100	120	14.1674
f[bb[aqqqqqqqqa]bbff	chr3:9843309-9843541(+)$1	232	167	187	13.3599
bb[cccqqqqqqqqccc]bb	chr16:28841218-28841478(+)$1	260	222	242	13.9286
[ccc[aqqqqqqqqacccee	chr12:124093152-124093477(+)$1	325	50	70	14.4790
c[bb[aqqqqqqqqa]bb]c	chr1:153731901-153732121(+)$1	220	59	79	13.4897
fffffaqqqqqqqqa]ffff	chr12:57883598-57883850(+)$1	252	36	56	14.1335
"""cccqqqqqqqqccc333	chr11:64899606-64899911(-)$1	305	147	167	15.4683
c[ddddqqqqqqqqdddd]c	chr3:52506232-52506495(+)$1	263	223	243	14.3188
gbbcccqqqqqqqqccc]bb	chr17:76117536-76117830(-)$1	294	175	195	13.8630
fff[bbqqqqqqqqbbffff	chr19:49967021-49967304(+)$1	283	59	79	14.3793
#eeeeeqqqqqqqqeeeeed	chr1:1249611-1249852(-)$1	241	45	65	13.8569
!!ddddqqqqqqqqdddd]b	chr21:46927370-46927594(+)$1	224	87	107	14.3523
[bb[bbqqqqqqqqbbbb]g	chr19:5245860-5246141(-)$1	281	226	246	13.8734
ffffffqqqqqqqqffffff	chr12:62926117-62926352(+)$1	235	95	115	14.0207
:eeeeeqqqqqqqqeeeeeF	chr6:33262365-33262624(-)$1	259	24	44	12.5122
[eeeeeqqqqqqqqeeeee]	chr19:14521285-14521513(-)$1	228	91	111	14.0902
ccc[bbqqqqqqqqbb]ccc	chr1:158639397-158639647(-)$1	250	41	61	14.3068
dd[cccqqqqqqqqcccddd	chr3:183860760-183861013(+)$1	253	41	61	13.9680
===[bbqqqqqqqqbb]===	chr1:151339199-151339477(-)$1	278	94	114	14.7691
eeeebbqqqqqqqqbb]eee	chr3:49138952-49139168(-)$1	216	129	149	14.0828
##ddddqqqqqqqqdddd]b	chr17:73826561-73826788(-)$1	227	82	102	14.1879
ffffffqqqqqqqqffffff	chr19:19115046-19115338(-)$1	292	135	155	14.0207
"""cccqqqqqqqqccc333	chrX:70607010-70607263(+)$1	253	171	191	15.4683
ggg[bbqqqqqqqqbbgggg	chr12:53708779-53709030(-)$1	251	136	156	14.5453
$$ddddqqqqqqqqdddd44	chr10:127495902-127496161(-)$1	259	69	89	13.9622
ffffffqqqqqqqqffffff	chr3:172468535-172468748(+)$1	213	33	53	14.0207
ffffffqqqqqqqqffffff	chr21:38534206-38534460(+)$1	254	229	249	14.0207
ggggggqqqqqqqqgggggg	chr17:78350047-78350284(+)$1	237	17	37	14.2570
ff!!bbqqqqqqqqbb333f	chr16:89653029-89653265(+)$1	236	27	47	14.8480
ee[cccqqqqqqqqccc]ee	chr19:5694692-5694923(-)$1	231	53	73	14.5996
d[acccqqqqqqqqccc333	chr3:14518642-14518949(+)$1	307	248	268	15.0453
hhh[bbqqqqqqqqbb]hhh	chr21:47957049-47957301(+)$1	252	49	69	13.1277
"""cccqqqqqqqqcccfff	chr20:34309560-34309863(-)$1	303	193	213	15.0445
eeeeeaqqqqqqqqa]eeee	chr3:47046469-47046681(+)$1	212	102	122	13.8865
g[ddddqqqqqqqqdddd]g	chr2:44203183-44203401(-)$1	218	76	96	14.3773
ccc[bbqqqqqqqqbb22cc	chr16:722604-722849(+)$1	245	52	72	13.9825
d"""bbqqqqqqqqbb333d	chr17:73809057-73809295(+)$1	238	182	202	14.5078
ffffffqqqqqqqqffffff	chr11:47310877-47311134(+)$1	257	179	199	14.0207
!bb[bbqqqqqqqqbb]bb]	chr10:75551944-75552191(+)$1	247	150	170	13.7409
ffffffqqqqqqqqffffff	chr19:46285656-46285912(-)$1	256	144	164	14.0207
bb[cccqqqqqqqqccc]bb	chr7:5256128-5256391(+)$1	263	7	27	13.9286
ffffffqqqqqqqqffffff	chr7:150777558-150777850(-)$1	292	240	260	14.0207
ffffffqqqqqqqqffffff	chr1:46072134-46072389(+)$1	255	189	209	14.0207
!!ddddqqqqqqqqddddbb	chr18:33724801-33725091(+)$1	290	152	172	13.9143
!!ddddqqqqqqqqdddd]d	chr1:43895919-43896160(+)$1	241	166	186	14.3983
eee[bbqqqqqqqqbb]eee	chr19:41117666-41117915(+)$1	249	49	69	14.2282
!bb[bbqqqqqqqqbbbb22	chr17:25637035-25637301(+)$1	266	172	192	13.5494
"eeeeeqqqqqqqqeeeee2	chr14:39645629-39645845(+)$1	216	107	127	13.9165
ffffffqqqqqqqqffffff	chr12:111923418-111923693(-)$1	275	122	142	14.0207
c!!cccqqqqqqqqccc]cc	chr6:31619370-31619625(-)$1	255	224	244	14.9836
"""cccqqqqqqqqccc333	chr22:23603441-23603659(+)$1	218	28	48	15.4683
ggggggqqqqqqqqgggggg	chr1:46658924-46659222(-)$1	298	271	291	14.2570

#otherMatches

#Seq PSSM
ccauaggcucccaacuuggg	chr1:22216374-22216593(-)$1	219	186	206	14.0796
UGAGCCGAGAACGAGGCGAG	chr3:184044956-184045310(+)$1	354	55	75	15.1084
ACGGCCGUGCCCUGGGCCCC	chr1:981009-981314(+)$1	305	211	231	12.6138
GGCCUGGAGCAAAACGGUUA	chr1:40531786-40531999(+)$1	213	190	210	14.4126
CAAAGGUUAUUCAUUCUUUU	chr22:31985337-31985610(+)$1	273	68	88	14.0863
CCACGCCCGGAACUGCGUGA	chr16:50332714-50332935(+)$1	221	177	197	13.6426
GUUCCCAUUUCCCAGGUUCU	chr16:239206-239439(-)$1	233	86	106	14.6396
CUUUCUGACUACAAAGAAAA	chr2:130865481-130865740(-)$1	259	101	121	14.0966
GCCCAGGAGGCUGACUGAGC	chr2:74753708-74753946(-)$1	238	2	22	14.1034
UCGAGGUAUCAUUUUCUGCA	chr7:930526-930794(+)$1	268	55	75	14.6478
GUUAAUAUAUGUACAUUACA	chr6:151206673-151206907(+)$1	234	17	37	14.2290
CAGCCAGACGAAGGUGGCAG	chr6:43040509-43040803(+)$1	294	66	86	13.9019
UCUGCUGUGAUGUGAGUAGA	chr17:17723226-17723476(-)$1	250	138	158	14.1975
AAUCGAGGAGUGAAUCUGAU	chr15:64004894-64005119(-)$1	225	87	107	14.2819
UUUGGGAAACACCAUCCACC	chr17:78343211-78343572(+)$1	361	45	65	14.2290
UGAGUUUAGCAAAUGGCUUU	chr12:69120263-69120496(+)$1	233	25	45	13.9260
GCUGAUGUGGCUGAGUCAGG	chr3:14509549-14509807(+)$1	258	152	172	13.7348
AAGCUUGUCUCAGAAGGUAA	chr6:90409685-90409897(-)$1	212	100	120	14.1674
GACCCUGUUACAGAAUGGCC	chr3:9843309-9843541(+)$1	232	167	187	13.3599
CAGAGUUGAUGAGUGCUGUG	chr16:28841218-28841478(+)$1	260	222	242	13.9286
UAAAUGUUAACUUUCUUUCC	chr12:124093152-124093477(+)$1	325	50	70	14.4790
UUGAUGAAACUAGCCCUCUG	chr1:153731901-153732121(+)$1	220	59	79	13.4897
AGUGUCUCAUUUGUGUACAU	chr12:57883598-57883850(+)$1	252	36	56	14.1335
CAUCCUGACCCGUGGGGCCU	chr11:64899606-64899911(-)$1	305	147	167	15.4683
AGAGGCUAGAGAGUGUUUGU	chr3:52506232-52506495(+)$1	263	223	243	14.3188
CUCGGAGUUCAUGAUCCAGG	chr17:76117536-76117830(-)$1	294	175	195	13.8630
agucgacuucuagaucAUUU	chr19:49967021-49967304(+)$1	283	59	79	14.3793
GGACGCUGCCUGCUGUGUCG	chr1:1249611-1249852(-)$1	241	45	65	13.8569
CUGCUGCUUUCUUCCAGCUG	chr21:46927370-46927594(+)$1	224	87	107	14.3523
CCGAGGAUGACAUGCCCGUG	chr19:5245860-5246141(-)$1	281	226	246	13.8734
UUCAGCUUAGAAAUGUUGGA	chr12:62926117-62926352(+)$1	235	95	115	14.0207
GGAGGGAUGGAGGGCCCUCA	chr6:33262365-33262624(-)$1	259	24	44	12.5122
CUCAGGCUCCCCUCCCUGAA	chr19:14521285-14521513(-)$1	228	91	111	14.0902
AAGCAUUCAUUUUUAUUUUU	chr1:158639397-158639647(-)$1	250	41	61	14.3068
GAUGUUGGCCCAUGAACUUA	chr3:183860760-183861013(+)$1	253	41	61	13.9680
CAGGGGGUUUUGUGCUGCUG	chr1:151339199-151339477(-)$1	278	94	114	14.7691
UGGCCAUGUGAGCUUGUGCC	chr3:49138952-49139168(-)$1	216	129	149	14.0828
AGCCGGGAACUCAUCCGGAA	chr17:73826561-73826788(-)$1	227	82	102	14.1879
ugggggagaggaggCCCCCG	chr19:19115046-19115338(-)$1	292	135	155	14.0207
UCGGACAAGACAGGGUUACU	chrX:70607010-70607263(+)$1	253	171	191	15.4683
GCCCAAGUCACAAAUUGGUG	chr12:53708779-53709030(-)$1	251	136	156	14.5453
CCGUGUUAAGAAAUACAUUU	chr10:127495902-127496161(-)$1	259	69	89	13.9622
CCGCCGGCGAGGAAUGGCGG	chr3:172468535-172468748(+)$1	213	33	53	14.0207
AAUAUAUAUAAACUUGUGUU	chr21:38534206-38534460(+)$1	254	229	249	14.0207
UUGAUACAUCUUAAUGUUAA	chr17:78350047-78350284(+)$1	237	17	37	14.2570
CUCUGCUUGUUCCUGCCCCA	chr16:89653029-89653265(+)$1	236	27	47	14.8480
GAGAGCAAGGCCAAGCUGUC	chr19:5694692-5694923(-)$1	231	53	73	14.5996
AGUGCCCUCCUCAAGGCCAU	chr3:14518642-14518949(+)$1	307	248	268	15.0453
GGUUGCUCAGUGGUGUCACC	chr21:47957049-47957301(+)$1	252	49	69	13.1277
UUUGGAAGAGUAAGUCCAGG	chr20:34309560-34309863(-)$1	303	193	213	15.0445
GCUCGUGAGGGAGAAGUGAG	chr3:47046469-47046681(+)$1	212	102	122	13.8865
GAGGCAGUAUUCAGUGCCCU	chr2:44203183-44203401(-)$1	218	76	96	14.3773
GGGACCGAGCCCCAGGGACC	chr16:722604-722849(+)$1	245	52	72	13.9825
CCUACUACCACAACAGCAAG	chr17:73809057-73809295(+)$1	238	182	202	14.5078
AGAGCUGUUUUAAAAGUUCU	chr11:47310877-47311134(+)$1	257	179	199	14.0207
GGUGGCGGAAGCAAGCGACG	chr10:75551944-75552191(+)$1	247	150	170	13.7409
GGCCGCAGAGAGAAGUGGCC	chr19:46285656-46285912(-)$1	256	144	164	14.0207
GGGCAGGUAUUGCACUGGCC	chr7:5256128-5256391(+)$1	263	7	27	13.9286
GCGcccugcgaggugggcgc	chr7:150777558-150777850(-)$1	292	240	260	14.0207
GGUGGAAACGGGGCUCUACC	chr1:46072134-46072389(+)$1	255	189	209	14.0207
AAACUGGGUAAAUGCAGUUC	chr18:33724801-33725091(+)$1	290	152	172	13.9143
GGGAAGGCUGGCUGCUUCAC	chr1:43895919-43896160(+)$1	241	166	186	14.3983
GAAUGGAUUCAGGCCCCUUC	chr19:41117666-41117915(+)$1	249	49	69	14.2282
UGUGCAUUAUAGCUUGACUG	chr17:25637035-25637301(+)$1	266	172	192	13.5494
AUUCUCAGAUAGUGGAGGAG	chr14:39645629-39645845(+)$1	216	107	127	13.9165
UGUUUGUUUUGCACCAAAUA	chr12:111923418-111923693(-)$1	275	122	142	14.0207
UUUAGCUUUUCCUCGUUUAG	chr6:31619370-31619625(-)$1	255	224	244	14.9836
UACUGCCAUACAAUGCACCU	chr22:23603441-23603659(+)$1	218	28	48	15.4683
GGCAGACACCUGGCUCUGCC	chr1:46658924-46659222(-)$1	298	271	291	14.2570

#DB
((..((........))..))	chr1:22216374-22216593(-)$1	1	186	206	14.0796
(..(((........)))...	chr3:184044956-184045310(+)$1	1	55	75	15.1084
))((((........)))).(	chr1:981009-981314(+)$1	1	211	231	12.6138
((((.(........))))))	chr1:40531786-40531999(+)$1	1	190	210	14.4126
.(((((........))))))	chr22:31985337-31985610(+)$1	1	68	88	14.0863
.(((((........))))).	chr16:50332714-50332935(+)$1	1	177	197	13.6426
(...((........))....	chr16:239206-239439(-)$1	1	86	106	14.6396
.(((((........))))))	chr2:130865481-130865740(-)$1	1	101	121	14.0966
((.(((........))).))	chr2:74753708-74753946(-)$1	1	2	22	14.1034
(..(((........)))..)	chr7:930526-930794(+)$1	1	55	75	14.6478
..((((........))))..	chr6:151206673-151206907(+)$1	1	17	37	14.2290
(.((((........)))).)	chr6:43040509-43040803(+)$1	1	66	86	13.9019
((((((........))))))	chr17:17723226-17723476(-)$1	1	138	158	14.1975
((((((........)).)))	chr15:64004894-64005119(-)$1	1	87	107	14.2819
..((((........))))..	chr17:78343211-78343572(+)$1	1	45	65	14.2290
.(((((........))))))	chr12:69120263-69120496(+)$1	1	25	45	13.9260
))((((........))))((	chr3:14509549-14509807(+)$1	1	152	172	13.7348
..((((........))))..	chr6:90409685-90409897(-)$1	1	100	120	14.1674
(.((.(........).))))	chr3:9843309-9843541(+)$1	1	167	187	13.3599
((.(((........))).))	chr16:28841218-28841478(+)$1	1	222	242	13.9286
.(((.(........))))))	chr12:124093152-124093477(+)$1	1	50	70	14.4790
(.((.(........).)).)	chr1:153731901-153732121(+)$1	1	59	79	13.4897
((((((........).))))	chr12:57883598-57883850(+)$1	1	36	56	14.1335
...(((........)))...	chr11:64899606-64899911(-)$1	1	147	167	15.4683
(.((((........)))).)	chr3:52506232-52506495(+)$1	1	223	243	14.3188
((((((........))).))	chr17:76117536-76117830(-)$1	1	175	195	13.8630
(((.((........))))))	chr19:49967021-49967304(+)$1	1	59	79	14.3793
.(((((........))))))	chr1:1249611-1249852(-)$1	1	45	65	13.8569
..((((........)))).)	chr21:46927370-46927594(+)$1	1	87	107	14.3523
.((.((........)))).)	chr19:5245860-5246141(-)$1	1	226	246	13.8734
((((((........))))))	chr12:62926117-62926352(+)$1	1	95	115	14.0207
.(((((........)))))(	chr6:33262365-33262624(-)$1	1	24	44	12.5122
.(((((........))))).	chr19:14521285-14521513(-)$1	1	91	111	14.0902
(((.((........)).)))	chr1:158639397-158639647(-)$1	1	41	61	14.3068
((.(((........))))))	chr3:183860760-183861013(+)$1	1	41	61	13.9680
(((.((........)).)))	chr1:151339199-151339477(-)$1	1	94	114	14.7691
((((((........)).)))	chr3:49138952-49139168(-)$1	1	129	149	14.0828
..((((........)))).)	chr17:73826561-73826788(-)$1	1	82	102	14.1879
((((((........))))))	chr19:19115046-19115338(-)$1	1	135	155	14.0207
...(((........)))...	chrX:70607010-70607263(+)$1	1	171	191	15.4683
(((.((........))))))	chr12:53708779-53709030(-)$1	1	136	156	14.5453
..((((........))))..	chr10:127495902-127496161(-)$1	1	69	89	13.9622
((((((........))))))	chr3:172468535-172468748(+)$1	1	33	53	14.0207
((((((........))))))	chr21:38534206-38534460(+)$1	1	229	249	14.0207
((((((........))))))	chr17:78350047-78350284(+)$1	1	17	37	14.2570
((..((........))...)	chr16:89653029-89653265(+)$1	1	27	47	14.8480
((.(((........))).))	chr19:5694692-5694923(-)$1	1	53	73	14.5996
(.((((........)))...	chr3:14518642-14518949(+)$1	1	248	268	15.0453
(((.((........)).)))	chr21:47957049-47957301(+)$1	1	49	69	13.1277
...(((........))))))	chr20:34309560-34309863(-)$1	1	193	213	15.0445
((((((........).))))	chr3:47046469-47046681(+)$1	1	102	122	13.8865
(.((((........)))).)	chr2:44203183-44203401(-)$1	1	76	96	14.3773
(((.((........))..))	chr16:722604-722849(+)$1	1	52	72	13.9825
(...((........))...)	chr17:73809057-73809295(+)$1	1	182	202	14.5078
((((((........))))))	chr11:47310877-47311134(+)$1	1	179	199	14.0207
.((.((........)).)).	chr10:75551944-75552191(+)$1	1	150	170	13.7409
((((((........))))))	chr19:46285656-46285912(-)$1	1	144	164	14.0207
((.(((........))).))	chr7:5256128-5256391(+)$1	1	7	27	13.9286
((((((........))))))	chr7:150777558-150777850(-)$1	1	240	260	14.0207
((((((........))))))	chr1:46072134-46072389(+)$1	1	189	209	14.0207
..((((........))))))	chr18:33724801-33725091(+)$1	1	152	172	13.9143
..((((........)))).)	chr1:43895919-43896160(+)$1	1	166	186	14.3983
(((.((........)).)))	chr19:41117666-41117915(+)$1	1	49	69	14.2282
.((.((........))))..	chr17:25637035-25637301(+)$1	1	172	192	13.5494
.(((((........))))).	chr14:39645629-39645845(+)$1	1	107	127	13.9165
((((((........))))))	chr12:111923418-111923693(-)$1	1	122	142	14.0207
(..(((........))).))	chr6:31619370-31619625(-)$1	1	224	244	14.9836
...(((........)))...	chr22:23603441-23603659(+)$1	1	28	48	15.4683
((((((........))))))	chr1:46658924-46659222(-)$1	1	271	291	14.2570

#PSSM
f : 0.23	! : 0.11	c : 0.08	g : 0.08	" : 0.08	e : 0.08	[ : 0.07	b : 0.05	d : 0.05	$ : 0.02	# : 0.02	i : 0.01	: : 0.01	= : 0.01	h : 0.01	
e : 0.18	f : 0.18	! : 0.11	b : 0.10	" : 0.08	[ : 0.08	c : 0.05	g : 0.05	d : 0.02	$ : 0.02	i : 0.01	= : 0.01	# : 0.01	h : 0.01	
d : 0.18	f : 0.17	e : 0.15	" : 0.08	b : 0.08	! : 0.07	[ : 0.07	g : 0.05	c : 0.04	i : 0.01	= : 0.01	a : 0.01	h : 0.01	
c : 0.21	d : 0.18	f : 0.15	e : 0.14	[ : 0.14	g : 0.04	! : 0.02	" : 0.02	b : 0.02	i : 0.01	
b : 0.23	c : 0.20	d : 0.18	f : 0.14	e : 0.13	[ : 0.05	g : 0.02	i : 0.01	
b : 0.23	c : 0.20	d : 0.18	f : 0.13	e : 0.11	a : 0.08	g : 0.02	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
b : 0.23	c : 0.20	d : 0.18	f : 0.13	e : 0.11	a : 0.08	g : 0.02	i : 0.01	
b : 0.23	c : 0.21	d : 0.18	f : 0.13	e : 0.11	] : 0.05	g : 0.04	i : 0.01	
c : 0.21	d : 0.18	f : 0.15	e : 0.13	] : 0.10	g : 0.05	b : 0.05	2 : 0.02	3 : 0.02	4 : 0.01	i : 0.01	
d : 0.20	f : 0.18	e : 0.15	] : 0.08	3 : 0.08	b : 0.07	g : 0.05	2 : 0.04	4 : 0.02	c : 0.02	i : 0.01	= : 0.01	h : 0.01	
e : 0.20	f : 0.20	] : 0.11	3 : 0.10	b : 0.07	c : 0.05	g : 0.05	2 : 0.05	4 : 0.04	d : 0.02	: : 0.01	i : 0.01	= : 0.01	h : 0.01	
f : 0.21	c : 0.13	e : 0.10	b : 0.10	g : 0.08	d : 0.08	3 : 0.07	2 : 0.05	4 : 0.04	] : 0.02	6 : 0.01	i : 0.01	F : 0.01	= : 0.01	h : 0.01	

#score	977.7449391387714
#seq	69
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF449ZHX_SRSF7_transcript_m2_run1.txt

#BEAR
[a===========oooooo===========4	chr1:150198838-150199203(-)$1	365	50	81	17.8404
gggg"""iiiiiiiiillliiiiiiiii]gg	chr7:98479273-98479505(+)$1	232	21	52	12.3699
a============oooooo============	chr16:23868914-23869193(+)$1	279	128	159	17.7657
eee[a[gggggggooooooggggggg333a]	chr8:124382090-124382367(-)$1	277	34	65	14.5399
h[dddd####cccooooooccc333dddd]h	chr1:171486632-171486952(+)$1	320	245	276	13.0523
[ggggggg!!cccnnnnnccc22ggggggg2	chr3:156874634-156874964(-)$1	330	98	129	11.6584
====dddd[ddddoooooodddd22dddd44	chr6:7303698-7303973(-)$1	275	221	252	11.4646
!=============mmmm=============	chrX:70518218-70518454(+)$1	236	83	114	14.1153
ee!!a[ccc[cccooooooccc]ccc]a22e	chr17:34171852-34172137(+)$1	285	114	145	13.9609
bbccc"""a!!bboooooobb22a333ccc]	chr1:31836813-31837132(+)$1	319	127	158	14.2915
!!eeeee[bb[bboooooobb]bb]eeeee]	chr16:28840634-28840958(+)$1	324	194	225	12.0299
:==========rrrrrrrrr==========:	chrX:102941455-102941666(-)$1	211	125	156	12.2700
e[ggggggg!!bboooooobb22ggggggg]	chr20:13756432-13756857(-)$1	425	243	274	14.7489
hhhhhaccc[cccooooooccc]ccc4444a	chr11:65211465-65211793(+)$1	328	169	200	13.3795
==="""eeeee!!aooooooa22eeeee888	chr1:150192894-150193164(-)$1	270	178	209	11.2578
bb[a[iiiiiiiiimmmmiiiiiiiii]a]b	chr12:42707397-42707669(-)$1	272	83	114	11.0868
::ccc"""a!!bboooooobb22a333cccd	chr9:116170935-116171288(-)$1	353	183	214	12.5220
=========eeeeennnnneeeee4444===	chr20:34302044-34302307(-)$1	263	182	213	10.9113
ggggg!!ffffffooooooffffff333ggg	chr2:97559810-97560144(-)$1	334	117	148	13.2792
b[============================q	chr19:47774837-47775127(+)$1	290	114	145	12.1101
##bb!!gggggggooooooggggggg22bb3	chr9:100777576-100777798(+)$1	222	46	77	13.6100
"bb!!a[ffffffooooooffffffa]bb33	chr11:47493615-47493929(-)$1	314	221	252	12.3847
iiiibb"""ddddoooooodddd333bb]ii	chr3:156867968-156868278(-)$1	310	53	84	12.2866
a"""========================[gg	chr7:1479159-1479443(-)$1	284	32	63	12.3691
ggggiiiiiiiiiqqqqqqqqiiiiiiiii>	chr12:76453476-76453689(-)$1	213	11	42	10.5633
:==========rrrrrrrrr==========c	chrX:102941466-102941720(-)$1	254	179	210	12.9993
'''ccc####cccooooooccc333ccc999	chr2:170668204-170668463(+)$1	259	126	157	11.0130
:============nnnnn============:	chr1:26227881-26228100(-)$1	219	181	212	12.8861
[a[ffffff[cccooooooccc]ffffff]a	chr19:28915085-28915371(-)$1	286	3	34	13.1050
============[ccclllccc]========	chr4:142154863-142155163(+)$1	300	68	99	13.7130
c[ccc!!ffffffooooooffffff22cccc	chr2:128255640-128255915(-)$1	275	50	81	12.2079
eee[eeeee!!bboooooobb]eeeee]eee	chr4:174253025-174253320(-)$1	295	208	239	12.1829
bb!!dddd"""bboooooobb22dddd]bb2	chr2:86258547-86258847(-)$1	300	193	224	12.0986
####==========nnnnn==========55	chr12:76449748-76449967(-)$1	219	179	210	13.2005
c!!cccgggggggnnnnnggggggg]ccc33	chr2:232576551-232576778(+)$1	227	26	57	11.0147
ggggggg[bbrrrrrrrrrbbgggggggiii	chr17:80442325-80442594(+)$1	269	21	52	10.3997
d####bb!!ddddoooooodddd22bb]ddd	chr2:27606297-27606568(-)$1	271	126	157	10.7851
[==========ssssssssss==========	chr21:38739264-38739526(+)$1	262	147	178	11.8416
c!!eeeee"""bboooooobb4444eeeee2	chr7:142651446-142651714(-)$1	268	117	148	13.2598
eeeee[ffffffaooooooa]ffffff]eee	chr3:9470523-9470799(+)$1	276	68	99	11.3770
GGa[iiiiiiiiiooooooiiiiiiiii]ad	chr19:11664261-11664521(-)$1	260	37	68	14.5658
gggggg[bb[cccooooooccc]bb22gggg	chr8:117861093-117861317(-)$1	224	132	163	13.6169
=======[cccqqqqqqqqccc]========	chr1:70715954-70716276(+)$1	322	228	259	11.5804
====!!iiiiiiiiimmmmiiiiiiiii333	chr4:881202-881479(-)$1	277	150	181	12.7826
$$$==========oooooo==========cc	chr1:987992-988270(+)$1	278	234	265	16.8327
========a[aqqqqqqqqa]a]========	chr6:99849282-99849547(-)$1	265	30	61	11.7043
eeeee[bb!!cccooooooccc22bb]eeee	chrX:135957125-135957390(-)$1	265	10	41	12.3427
e"""eeeee!!bboooooobb22eeeee333	chr11:65272335-65272561(+)$1	226	189	220	13.7358
ddd!!dddd[cccooooooccc]dddd]ddd	chr19:14199895-14200272(-)$1	377	21	52	11.9888

#otherMatches

#Seq PSSM
ACUCAUCUUUAAAUGAUUUUUUAAAGAUGGC	chr1:150198838-150199203(-)$1	365	50	81	17.8404
UUUUCCUUUUCUCUACCUUGUAGAGAAGCAA	chr7:98479273-98479505(+)$1	232	21	52	12.3699
gugugugugugugggugugugCGCACGUGCG	chr16:23868914-23869193(+)$1	279	128	159	17.7657
UCACCUAUGUUAAAAAUUGUUAACAUUUUGC	chr8:124382090-124382367(-)$1	277	34	65	14.5399
UGGUCCUCCACAGGCUAAACUGAAUGGACAG	chr1:171486632-171486952(+)$1	320	245	276	13.0523
GCUACAUUUACCAAAGCCUGGGUGAUGUGGA	chr3:156874634-156874964(-)$1	330	98	129	11.6584
UGUAGGCAUUUUAAAACGAUGAGCUUGUUCA	chr6:7303698-7303973(-)$1	275	221	252	11.4646
UAUUUUUUGUUUUUCAGAGAGAGCAGGAGAU	chrX:70518218-70518454(+)$1	236	83	114	14.1153
GUGGCGGCUAUGGAGGAGACCGAGGUGGGGG	chr17:34171852-34172137(+)$1	285	114	145	13.9609
GAGUGAUACAGGCAAGAGGGCAAGGCACACA	chr1:31836813-31837132(+)$1	319	127	158	14.2915
CUCUCCAGGUGAUGUGUUGGUGAUAUGGGGU	chr16:28840634-28840958(+)$1	324	194	225	12.0299
GGGAGAAAGGGUCGAUGAUUUCCUUUUUUCG	chrX:102941455-102941666(-)$1	211	125	156	12.2700
GAAGAUGAAGAUGAUACGGCAGAUUUGUUUC	chr20:13756432-13756857(-)$1	425	243	274	14.7489
GGGGAGGGGGCAAAGGCAGUUGGCCCAACAC	chr11:65211465-65211793(+)$1	328	169	200	13.3795
CUAAGACCAGAUUCUCUAAUGUUUCUGGGUG	chr1:150192894-150193164(-)$1	270	178	209	11.2578
UUGUUUUUCUUUAUUUAAGUGAGGAAGUAGA	chr12:42707397-42707669(-)$1	272	83	114	11.0868
gaaguagaCAACUGAAAAGGGCGGGAGACUG	chr9:116170935-116171288(-)$1	353	183	214	12.5220
AUGGCAAGACUUGCAGAGGGUAAGUGUUUCU	chr20:34302044-34302307(-)$1	263	182	213	10.9113
GGGAGCUGGGUAUGUUUGGGUACCCCUCCUC	chr2:97559810-97560144(-)$1	334	117	148	13.2792
gugugugugugugugugugugugugugugug	chr19:47774837-47775127(+)$1	290	114	145	12.1101
AGUCAAUUUUUGUUACUGUACagaggaggaa	chr9:100777576-100777798(+)$1	222	46	77	13.6100
GCCCUGAGGCUGUGUGUUGACAGCCCUGGAC	chr11:47493615-47493929(-)$1	314	221	252	12.3847
GCUUCAGAAGAACUGGUUUGUUUACAUGCAA	chr3:156867968-156868278(-)$1	310	53	84	12.2866
GCUuguguguacaugugugcaugugugugau	chr7:1479159-1479443(-)$1	284	32	63	12.3691
UUUUUUUUAAAUCAUUUUAGCGAUUUGAAAU	chr12:76453476-76453689(-)$1	213	11	42	10.5633
GGGAGAAAGGGUCGAUGAUUUCCUUUUUUCG	chrX:102941466-102941720(-)$1	254	179	210	12.9993
UAAAAGGAAAACCGAAUUAGGUCCACUUCAA	chr2:170668204-170668463(+)$1	259	126	157	11.0130
AACUAAGUGCUUUGAUAAAAGGUGUUUGGUG	chr1:26227881-26228100(-)$1	219	181	212	12.8861
gcagagugccuggcaaagacuaagcacucag	chr19:28915085-28915371(-)$1	286	3	34	13.1050
AUGCUUAUUGGAAGAACCUUUCAUCUGAUAA	chr4:142154863-142155163(+)$1	300	68	99	13.7130
CACUUAAUACAGAAGAAAAUCUGUAAGGAGG	chr2:128255640-128255915(-)$1	275	50	81	12.2079
UUUGUAUAGCUGAUAAGAUUCUCUGUAGAGA	chr4:174253025-174253320(-)$1	295	208	239	12.1829
CCAAGAGCAAGAUGAAGAGGUGGGCUUAGGC	chr2:86258547-86258847(-)$1	300	193	224	12.0986
GUUUACUUUGAAGGGUAAACCUUUGAAGUUU	chr12:76449748-76449967(-)$1	219	179	210	13.2005
UGGCCUGUUUUCUGUCGAGGAGAAUGAGGAA	chr2:232576551-232576778(+)$1	227	26	57	11.0147
uguagugagcuaugauugugccacugcacuc	chr17:80442325-80442594(+)$1	269	21	52	10.3997
CGGUGGUGGCCCUGAUACGAGGGAAGCAGUU	chr2:27606297-27606568(-)$1	271	126	157	10.7851
auugugcgcgcgagugugcgggugugugcga	chr21:38739264-38739526(+)$1	262	147	178	11.8416
UGAUGUUCCCCUCAAGCAAGAUCAAGAACAG	chr7:142651446-142651714(-)$1	268	117	148	13.2598
GUGAUUUCCAAUCUCUGCUGUGUUGGACGUC	chr3:9470523-9470799(+)$1	276	68	99	11.3770
CAGGGGUCCAGGGUGUGGGUCCUGGGCUGUC	chr19:11664261-11664521(-)$1	260	37	68	14.5658
GGUAUUGCCGCUGUUGUCUCAGAGGAAAAUG	chr8:117861093-117861317(-)$1	224	132	163	13.6169
AAAAGUAUGUUUACAAAUUGAUUUAUUUUUA	chr1:70715954-70716276(+)$1	322	228	259	11.5804
uguguacacacgcaugcaagugugugugagc	chr4:881202-881479(-)$1	277	150	181	12.7826
ggguccauguauguguguguauauguggggg	chr1:987992-988270(+)$1	278	234	265	16.8327
UUCUGUUUCAGAAGAAAAGCAGCAAACAGAA	chr6:99849282-99849547(-)$1	265	30	61	11.7043
AAGUUGCAAUGAAAGUUGAUUCUCUGGGACU	chrX:135957125-135957390(-)$1	265	10	41	12.3427
CAGAUCAGUUAUGGGACAAUAGUAUUGAAUA	chr11:65272335-65272561(+)$1	226	189	220	13.7358
CCACCGCCCGGACGCCACAGUCAGGGUCUGG	chr19:14199895-14200272(-)$1	377	21	52	11.9888

#DB
.((((((((((((......))))))))))).	chr1:150198838-150199203(-)$1	1	50	81	17.8404
((((...(((((((((...))))))))).))	chr7:98479273-98479505(+)$1	1	21	52	12.3699
(((((((((((((......))))))))))))	chr16:23868914-23869193(+)$1	1	128	159	17.7657
(((.(.(((((((......)))))))...).	chr8:124382090-124382367(-)$1	1	34	65	14.5399
(.((((....(((......)))...)))).)	chr1:171486632-171486952(+)$1	1	245	276	13.0523
.(((((((..(((.....)))..))))))).	chr3:156874634-156874964(-)$1	1	98	129	11.6584
((((((((.((((......))))..))))..	chr6:7303698-7303973(-)$1	1	221	252	11.4646
.(((((((((((((....)))))))))))))	chrX:70518218-70518454(+)$1	1	83	114	14.1153
((..(.(((.(((......))).))).)..)	chr17:34171852-34172137(+)$1	1	114	145	13.9609
(((((...(..((......))..)...))).	chr1:31836813-31837132(+)$1	1	127	158	14.2915
..(((((.((.((......)).)).))))).	chr16:28840634-28840958(+)$1	1	194	225	12.0299
.((((((((((.........)))))))))).	chrX:102941455-102941666(-)$1	1	125	156	12.2700
(.(((((((..((......))..))))))).	chr20:13756432-13756857(-)$1	1	243	274	14.7489
(((((((((.(((......))).)))....)	chr11:65211465-65211793(+)$1	1	169	200	13.3795
(((...(((((..(......)..)))))...	chr1:150192894-150193164(-)$1	1	178	209	11.2578
((.(.(((((((((....))))))))).).)	chr12:42707397-42707669(-)$1	1	83	114	11.0868
..(((...(..((......))..)...)))(	chr9:116170935-116171288(-)$1	1	183	214	12.5220
((((((((((((((.....)))))....)))	chr20:34302044-34302307(-)$1	1	182	213	10.9113
(((((..((((((......))))))...)))	chr2:97559810-97560144(-)$1	1	117	148	13.2792
(.((((((((((((((((((((((((((((.	chr19:47774837-47775127(+)$1	1	114	145	12.1101
..((..(((((((......)))))))..)).	chr9:100777576-100777798(+)$1	1	46	77	13.6100
.((..(.((((((......))))))).))..	chr11:47493615-47493929(-)$1	1	221	252	12.3847
((((((...((((......))))...)).))	chr3:156867968-156868278(-)$1	1	53	84	12.2866
(...((((((((((((((((((((((((.((	chr7:1479159-1479443(-)$1	1	32	63	12.3691
(((((((((((((........))))))))).	chr12:76453476-76453689(-)$1	1	11	42	10.5633
.((((((((((.........))))))))))(	chrX:102941466-102941720(-)$1	1	179	210	12.9993
...(((....(((......)))...)))...	chr2:170668204-170668463(+)$1	1	126	157	11.0130
.((((((((((((.....)))))))))))).	chr1:26227881-26228100(-)$1	1	181	212	12.8861
.(.((((((.(((......))).)))))).)	chr19:28915085-28915371(-)$1	1	3	34	13.1050
((((((((((((.(((...))).))))))))	chr4:142154863-142155163(+)$1	1	68	99	13.7130
(.(((..((((((......))))))..))))	chr2:128255640-128255915(-)$1	1	50	81	12.2079
(((.(((((..((......)).))))).)))	chr4:174253025-174253320(-)$1	1	208	239	12.1829
((..((((...((......))..)))).)).	chr2:86258547-86258847(-)$1	1	193	224	12.0986
....((((((((((.....))))))))))..	chr12:76449748-76449967(-)$1	1	179	210	13.2005
(..((((((((((.....))))))).)))..	chr2:232576551-232576778(+)$1	1	26	57	11.0147
(((((((.((.........))))))))))))	chr17:80442325-80442594(+)$1	1	21	52	10.3997
(....((..((((......))))..)).)))	chr2:27606297-27606568(-)$1	1	126	157	10.7851
.((((((((((..........))))))))))	chr21:38739264-38739526(+)$1	1	147	178	11.8416
(..(((((...((......))....))))).	chr7:142651446-142651714(-)$1	1	117	148	13.2598
(((((.(((((((......).)))))).)))	chr3:9470523-9470799(+)$1	1	68	99	11.3770
(((.(((((((((......))))))))).)(	chr19:11664261-11664521(-)$1	1	37	68	14.5658
((((((.((.(((......))).))..))))	chr8:117861093-117861317(-)$1	1	132	163	13.6169
(((((((.(((........))).))))))))	chr1:70715954-70716276(+)$1	1	228	259	11.5804
((((..(((((((((....)))))))))...	chr4:881202-881479(-)$1	1	150	181	12.7826
...((((((((((......))))))))))))	chr1:987992-988270(+)$1	1	234	265	16.8327
(((((((((.(........).).))))))))	chr6:99849282-99849547(-)$1	1	30	61	11.7043
(((((.((..(((......)))..)).))))	chrX:135957125-135957390(-)$1	1	10	41	12.3427
(...(((((..((......))..)))))...	chr11:65272335-65272561(+)$1	1	189	220	13.7358
(((..((((.(((......))).)))).)))	chr19:14199895-14200272(-)$1	1	21	52	11.9888

#PSSM
e : 0.14	= : 0.14	g : 0.10	[ : 0.08	b : 0.08	: : 0.08	c : 0.06	a : 0.04	h : 0.04	! : 0.04	# : 0.04	d : 0.04	" : 0.02	i : 0.02	' : 0.02	G : 0.02	$ : 0.02	
= : 0.26	g : 0.12	e : 0.10	[ : 0.08	b : 0.08	! : 0.06	# : 0.06	a : 0.04	" : 0.04	h : 0.02	: : 0.02	i : 0.02	' : 0.02	G : 0.02	$ : 0.02	d : 0.02	
= : 0.30	g : 0.14	e : 0.10	! : 0.08	c : 0.06	d : 0.04	[ : 0.04	b : 0.04	" : 0.04	# : 0.04	h : 0.02	i : 0.02	' : 0.02	a : 0.02	$ : 0.02	
= : 0.30	g : 0.14	c : 0.10	! : 0.08	e : 0.08	[ : 0.06	" : 0.06	# : 0.04	d : 0.02	h : 0.02	a : 0.02	b : 0.02	i : 0.02	f : 0.02	
= : 0.30	e : 0.12	g : 0.10	c : 0.10	! : 0.08	d : 0.06	" : 0.04	a : 0.04	i : 0.04	h : 0.02	[ : 0.02	b : 0.02	f : 0.02	# : 0.02	
= : 0.30	" : 0.08	[ : 0.08	d : 0.08	g : 0.08	e : 0.08	! : 0.08	i : 0.06	a : 0.04	b : 0.04	c : 0.04	f : 0.02	
= : 0.30	g : 0.12	e : 0.10	" : 0.08	i : 0.08	d : 0.06	# : 0.04	c : 0.04	! : 0.04	[ : 0.04	f : 0.04	b : 0.04	
= : 0.28	i : 0.10	g : 0.10	f : 0.10	e : 0.08	d : 0.06	" : 0.06	[ : 0.06	# : 0.04	c : 0.04	b : 0.04	! : 0.02	
= : 0.26	i : 0.10	f : 0.10	g : 0.08	! : 0.06	c : 0.06	a : 0.06	b : 0.06	e : 0.06	" : 0.06	# : 0.04	[ : 0.02	d : 0.02	
= : 0.24	! : 0.14	[ : 0.12	i : 0.10	f : 0.08	g : 0.06	d : 0.06	# : 0.04	b : 0.04	e : 0.04	" : 0.04	c : 0.02	
= : 0.24	c : 0.20	i : 0.10	! : 0.10	f : 0.08	g : 0.06	d : 0.06	e : 0.04	" : 0.04	[ : 0.02	r : 0.02	a : 0.02	
= : 0.18	c : 0.18	b : 0.16	i : 0.10	f : 0.08	g : 0.06	d : 0.06	r : 0.06	q : 0.04	! : 0.02	e : 0.02	s : 0.02	
c : 0.18	= : 0.16	b : 0.16	i : 0.10	g : 0.06	d : 0.06	r : 0.06	f : 0.06	q : 0.04	! : 0.02	e : 0.02	[ : 0.02	s : 0.02	a : 0.02	
o : 0.59	= : 0.08	i : 0.06	n : 0.06	r : 0.06	q : 0.06	a : 0.02	e : 0.02	c : 0.02	s : 0.02	
o : 0.61	n : 0.10	r : 0.06	q : 0.06	i : 0.04	m : 0.04	= : 0.04	c : 0.02	s : 0.02	
o : 0.61	n : 0.10	m : 0.06	r : 0.06	q : 0.06	= : 0.04	i : 0.02	c : 0.02	s : 0.02	
o : 0.61	n : 0.10	m : 0.06	r : 0.06	q : 0.06	l : 0.04	= : 0.04	s : 0.02	
o : 0.61	n : 0.10	m : 0.06	r : 0.06	q : 0.06	l : 0.04	= : 0.04	s : 0.02	
o : 0.61	= : 0.08	r : 0.06	q : 0.06	l : 0.04	n : 0.04	c : 0.02	i : 0.02	g : 0.02	s : 0.02	m : 0.02	
c : 0.22	b : 0.18	= : 0.16	i : 0.08	g : 0.06	d : 0.06	f : 0.06	r : 0.04	a : 0.04	o : 0.02	e : 0.02	q : 0.02	s : 0.02	
c : 0.22	= : 0.20	b : 0.18	i : 0.08	g : 0.06	d : 0.06	f : 0.06	] : 0.04	a : 0.02	e : 0.02	q : 0.02	s : 0.02	
= : 0.22	c : 0.20	2 : 0.14	i : 0.10	g : 0.08	f : 0.08	d : 0.06	] : 0.04	e : 0.02	4 : 0.02	a : 0.02	
= : 0.22	2 : 0.16	] : 0.16	i : 0.10	g : 0.08	f : 0.08	d : 0.06	3 : 0.04	e : 0.04	b : 0.02	4 : 0.02	
= : 0.28	g : 0.12	i : 0.10	f : 0.10	e : 0.08	3 : 0.06	2 : 0.06	c : 0.04	a : 0.04	b : 0.04	d : 0.04	4 : 0.02	
= : 0.28	g : 0.12	i : 0.10	3 : 0.10	f : 0.10	e : 0.06	2 : 0.04	c : 0.04	4 : 0.04	d : 0.04	b : 0.04	] : 0.02	
= : 0.28	i : 0.10	g : 0.10	e : 0.10	d : 0.08	3 : 0.08	c : 0.06	f : 0.04	2 : 0.04	b : 0.04	4 : 0.02	a : 0.02	] : 0.02	
= : 0.28	i : 0.10	e : 0.10	3 : 0.08	d : 0.08	g : 0.06	] : 0.06	2 : 0.06	4 : 0.04	b : 0.04	c : 0.04	f : 0.04	
= : 0.28	] : 0.12	c : 0.10	e : 0.10	i : 0.08	g : 0.08	3 : 0.04	d : 0.04	4 : 0.04	b : 0.04	a : 0.02	2 : 0.02	f : 0.02	
= : 0.28	e : 0.10	d : 0.08	g : 0.08	c : 0.08	] : 0.06	3 : 0.06	b : 0.06	i : 0.04	2 : 0.02	4 : 0.02	8 : 0.02	a : 0.02	[ : 0.02	9 : 0.02	f : 0.02	
= : 0.24	g : 0.12	e : 0.10	c : 0.08	3 : 0.08	] : 0.06	i : 0.06	a : 0.04	4 : 0.04	b : 0.04	d : 0.04	2 : 0.02	8 : 0.02	9 : 0.02	5 : 0.02	
= : 0.14	3 : 0.10	g : 0.08	] : 0.08	e : 0.08	d : 0.08	2 : 0.06	c : 0.06	4 : 0.04	: : 0.04	a : 0.04	i : 0.04	h : 0.02	8 : 0.02	b : 0.02	q : 0.02	> : 0.02	9 : 0.02	5 : 0.02	

#score	627.1048169340678
#seq	49
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF901ABJ_SUPV3L1_transcript_m3_run1.txt

#BEAR
fffa[ffffff"""gggggggmmmmgggg	chr11:62609005-62609323(-)$1	318	213	242	9.8892
ccc!!ffffffggggggg$$$$$a[eeee	chrM:14160-14376(-)$1	216	69	98	13.6540
iiiiggggggg"""eeeeebb"""eeeee	chr11:65192503-65192753(+)$1	250	89	118	13.5244
ggggggg=============="""ggggg	chr19:34882786-34883090(+)$1	304	27	56	11.8624
h"""a[eeeee$$$$$dddd!!eeeeebb	chr11:65191216-65191497(+)$1	281	195	224	9.4679
eeeeggggggg"""bb!!ccc$$$$$bb[	chr19:893460-893688(+)$1	228	50	79	11.4731
gg22gggggggdddd!!ccc####eeeee	chr5:651661-651913(+)$1	252	40	69	11.5772
fff!!ffffff####a!!bb####eeeee	chrM:14218-14424(-)$1	206	20	49	17.1455
[ccc[ffffff####dddd"""eeeeeff	chr14:32954183-32954427(+)$1	244	5	34	13.5606
eeee[dddd[a[dddd!!bb$$$$$eeee	chrM:14366-14583(-)$1	217	116	145	10.9423
ddd!!ggggggg[bb^^^^^^^^^^^^^^	chrM:4190-4428(+)$1	238	19	48	9.6063
fff[a[ffffff[dddd[a"""dddd[ee	chr1:569795-570084(-)$1	289	123	152	11.5867
fff!!ffffff####a!!bb####eeeee	chrM:14226-14447(-)$1	221	43	72	17.1455
ebb!!ffffff!!a!!ccc####a[dddd	chr5:134260120-134260395(+)$1	275	140	169	14.1197
ccc!!ffffffggggggg$$$$$a[eeee	chrM:14176-14401(-)$1	225	94	123	13.6540
bb[ggggggg####ccc[bb!!ccclllc	chr8:9629592-9629846(+)$1	254	143	172	10.1984
c==========####ggggggg!!eeeee	chr19:34883338-34883586(+)$1	248	132	161	12.9672

#otherMatches

#Seq PSSM
ccaggaacggugcacUCUCCCUUCGGGGA	chr11:62609005-62609323(-)$1	318	213	242	9.8892
GCUGAAUAAUUUAUGAAGGAGAGGGGUCA	chrM:14160-14376(-)$1	216	69	98	13.6540
UAGUGUUGGUUAAGUUGUUGCUUGGAAGU	chr11:65192503-65192753(+)$1	250	89	118	13.5244
CAGGUAUGAGGAUCUGGGUCUGUCAUGUC	chr19:34882786-34883090(+)$1	304	27	56	11.8624
GGACCGUGGUUUGUUACUAUAGUGUUCCU	chr11:65191216-65191497(+)$1	281	195	224	9.4679
aaauuggaacgauacagagaagauuagca	chr19:893460-893688(+)$1	228	50	79	11.4731
GGAUGGUGAGAAGGGGGCUGGGUGUGAGG	chr5:651661-651913(+)$1	252	40	69	11.5772
AGUGUUUUAGUGGGGUUAGCGAUGGAGGU	chrM:14218-14424(-)$1	206	20	49	17.1455
GCGUUGAUUAGGGUGUUUAGCUGUUAACU	chr14:32954183-32954427(+)$1	244	5	34	13.5606
ACUACAGCGAUGGCUAUUGAGGAGUAUCC	chrM:14366-14583(-)$1	217	116	145	10.9423
UAUAUGAUAUGUCUCCAUACCCAUUACAA	chrM:4190-4428(+)$1	238	19	48	9.6063
CCUUGGUAUGUGCUUUCUCGUGUUACAUC	chr1:569795-570084(-)$1	289	123	152	11.5867
AGUGUUUUAGUGGGGUUAGCGAUGGAGGU	chrM:14226-14447(-)$1	221	43	72	17.1455
GUUGAUUAGUAGUAGUUACUGGUUGAACA	chr5:134260120-134260395(+)$1	275	140	169	14.1197
GCUGAAUAAUUUAUGAAGGAGAGGGGUCA	chrM:14176-14401(-)$1	225	94	123	13.6540
ugguuuucuuauuacagacuuacuuucaa	chr8:9629592-9629846(+)$1	254	143	172	10.1984
GAUCUGGGUCUGUCAGUAUCUGAGGAGGU	chr19:34883338-34883586(+)$1	248	132	161	12.9672

#DB
((((.((((((...(((((((....))))	chr11:62609005-62609323(-)$1	1	213	242	9.8892
(((..(((((((((((((.....(.((((	chrM:14160-14376(-)$1	1	69	98	13.6540
))))(((((((...(((((((...(((((	chr11:65192503-65192753(+)$1	1	89	118	13.5244
)))))))((((((((((((((...(((((	chr19:34882786-34883090(+)$1	1	27	56	11.8624
(...(.(((((.....((((..(((((((	chr11:65191216-65191497(+)$1	1	195	224	9.4679
(((((((((((...((..(((.....((.	chr19:893460-893688(+)$1	1	50	79	11.4731
))..)))))))((((..(((....(((((	chr5:651661-651913(+)$1	1	40	69	11.5772
(((..((((((....(..((....(((((	chrM:14218-14424(-)$1	1	20	49	17.1455
.(((.((((((....((((...(((((((	chr14:32954183-32954427(+)$1	1	5	34	13.5606
((((.((((.(.((((..((.....((((	chrM:14366-14583(-)$1	1	116	145	10.9423
(((..(((((((.((..............	chrM:4190-4428(+)$1	1	19	48	9.6063
(((.(.((((((.((((.(...((((.((	chr1:569795-570084(-)$1	1	123	152	11.5867
(((..((((((....(..((....(((((	chrM:14226-14447(-)$1	1	43	72	17.1455
(((..((((((..(..(((....(.((((	chr5:134260120-134260395(+)$1	1	140	169	14.1197
(((..(((((((((((((.....(.((((	chrM:14176-14401(-)$1	1	94	123	13.6540
((.(((((((....(((.((..(((...)	chr8:9629592-9629846(+)$1	1	143	172	10.1984
)((((((((((....(((((((..(((((	chr19:34883338-34883586(+)$1	1	132	161	12.9672

#PSSM
f : 0.23	c : 0.17	e : 0.17	g : 0.11	i : 0.05	h : 0.05	[ : 0.05	d : 0.05	b : 0.05	
f : 0.23	c : 0.17	g : 0.11	e : 0.11	b : 0.11	i : 0.05	" : 0.05	d : 0.05	= : 0.05	
f : 0.23	c : 0.17	e : 0.11	i : 0.05	g : 0.05	" : 0.05	2 : 0.05	d : 0.05	b : 0.05	[ : 0.05	= : 0.05	
! : 0.35	g : 0.11	e : 0.11	a : 0.05	i : 0.05	" : 0.05	2 : 0.05	c : 0.05	[ : 0.05	= : 0.05	
! : 0.35	g : 0.29	[ : 0.17	a : 0.11	= : 0.05	
f : 0.41	g : 0.35	[ : 0.11	d : 0.05	= : 0.05	
f : 0.47	g : 0.35	e : 0.05	d : 0.05	= : 0.05	
f : 0.47	g : 0.29	= : 0.11	e : 0.05	d : 0.05	
f : 0.47	g : 0.29	= : 0.11	e : 0.05	d : 0.05	
f : 0.47	g : 0.29	= : 0.11	e : 0.05	[ : 0.05	
f : 0.47	g : 0.23	= : 0.11	e : 0.05	a : 0.05	# : 0.05	
# : 0.29	" : 0.17	g : 0.17	= : 0.05	$ : 0.05	d : 0.05	[ : 0.05	f : 0.05	! : 0.05	
# : 0.29	" : 0.17	g : 0.11	d : 0.11	[ : 0.11	= : 0.05	$ : 0.05	! : 0.05	
# : 0.29	" : 0.17	d : 0.17	g : 0.11	= : 0.05	$ : 0.05	b : 0.05	a : 0.05	
# : 0.23	g : 0.17	d : 0.17	b : 0.11	e : 0.05	= : 0.05	$ : 0.05	! : 0.05	c : 0.05	
g : 0.23	d : 0.17	! : 0.11	a : 0.11	e : 0.05	= : 0.05	$ : 0.05	b : 0.05	^ : 0.05	c : 0.05	
! : 0.29	g : 0.23	d : 0.17	c : 0.11	e : 0.05	= : 0.05	^ : 0.05	
g : 0.23	! : 0.23	d : 0.11	c : 0.11	[ : 0.11	e : 0.05	= : 0.05	^ : 0.05	
b : 0.23	c : 0.17	g : 0.11	$ : 0.11	d : 0.11	e : 0.05	= : 0.05	^ : 0.05	a : 0.05	
b : 0.29	g : 0.11	$ : 0.11	c : 0.11	" : 0.11	= : 0.05	d : 0.05	^ : 0.05	# : 0.05	
# : 0.23	$ : 0.17	g : 0.11	! : 0.11	" : 0.11	b : 0.05	= : 0.05	c : 0.05	^ : 0.05	
$ : 0.23	" : 0.23	# : 0.23	! : 0.11	m : 0.05	^ : 0.05	g : 0.05	
$ : 0.23	# : 0.23	" : 0.11	e : 0.11	m : 0.05	^ : 0.05	d : 0.05	c : 0.05	! : 0.05	
a : 0.17	# : 0.17	" : 0.11	e : 0.11	$ : 0.11	m : 0.05	^ : 0.05	d : 0.05	c : 0.05	! : 0.05	
e : 0.41	[ : 0.17	$ : 0.11	m : 0.05	g : 0.05	^ : 0.05	d : 0.05	c : 0.05	
e : 0.58	g : 0.11	d : 0.11	$ : 0.05	^ : 0.05	l : 0.05	
e : 0.58	g : 0.11	b : 0.05	^ : 0.05	[ : 0.05	d : 0.05	l : 0.05	
e : 0.52	g : 0.11	b : 0.11	f : 0.05	^ : 0.05	d : 0.05	l : 0.05	
e : 0.52	g : 0.11	b : 0.05	[ : 0.05	f : 0.05	^ : 0.05	d : 0.05	c : 0.05	

#score	212.37522725332354
#seq	17
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF885OWJ_DDX3X_UTR_m1_run1.txt

#BEAR
iiiiiiiiiiiiiiiillliiiiiiiii333iiiiiiiii	chr17:19552212-19552502(+)$1	290	128	168	15.3486
[ccc!!bb[a[ddddaooooooa]dddd]a22bb]ccc]i	chr1:33815098-33815394(-)$1	296	74	114	15.8477
iii"""bb[gggggggooooooggggggg]bb22iiiiii	chr1:67519587-67519877(-)$1	290	90	130	16.4490
gg!!ccc"""bb[ddddoooooodddd]bb22ccc]gggg	chr5:130500861-130501076(-)$1	215	82	122	15.9384
gggggccccccffffffmmmmffffff]ccc=========	chr22:34316183-34316559(-)$1	376	269	309	12.6432
h[============!!ccclllccc]============hh	chr10:93558301-93558547(+)$1	246	126	166	15.2489
ddd[dddd"""a[cccooooooccc]a4444dddd]dddd	chr2:20646866-20647104(+)$1	238	26	66	16.0902
[ggggggg[eeeee[aooooooa]eeeee]ggggggg]bb	chr14:21161642-21161904(+)$1	262	119	159	16.3808
iiii[ccc"""eeeeeooooooeeeee]ccciiiiiiiii	chr19:49468563-49468789(+)$1	226	24	64	20.1143
[bb[==========[aooooooa22==========bb]a]	chr1:62190618-62190893(-)$1	275	160	200	17.2862
ggggg!!ccc[eeeeennnnneeeeeccc22ggggggg22	chr15:81293820-81294083(+)$1	263	13	53	14.0388
+++++ccc[a[eeeeeooooooeeeee]a22ccc22ccce	chr16:30075643-30075860(+)$1	217	38	78	14.0270
dccc[ccc[ccc!!cccooooooccc]ccc]ccc22ccc2	chrX:153607600-153607878(+)$1	278	81	121	15.4180
iiiiiii####eeeeeooooooeeeeeiiiiiiiii4444	chr14:53162341-53162647(-)$1	306	76	116	19.1694
gg$$$$$ccc[cccbboooooobb]ccc]ccc]ggggggg	chr10:100206481-100206739(-)$1	258	207	247	15.3912
dddd[==========ccclllccc]==========dddd]	chr9:5629129-5629416(+)$1	287	68	108	14.0501
e$$$$$bb[bbeeeeeooooooeeeee]bb]bb4444eee	chr22:42084697-42084973(-)$1	276	54	94	14.5061
ggggeeeeea!!ddddoooooodddd4444a]eeeee]gg	chr20:25176267-25176534(+)$1	267	136	176	15.7607
gggg[ccc"""eeeeellleeeee]cccggggggg]cccd	chr22:39131753-39132008(-)$1	255	107	147	14.2378
[eeeee!!ccceeeeeooooooeeeee]ccceeeeedddd	chr8:29940382-29940677(-)$1	295	121	161	15.3084
========"""a[ddddllldddd]a]=============	chr16:89894817-89895143(+)$1	326	24	64	16.4973
iiiiiiii"""eeeeeooooooeeeee4444iiiiiiiii	chr19:45419352-45419597(+)$1	245	193	233	20.4303
[iiiiiiiiiccc[bboooooobb]ccc4444iiiiiiii	chr19:1941202-1941430(+)$1	228	160	200	17.9106
============!!ddddmmmmdddd]=============	chr22:19024795-19025043(-)$1	248	38	78	15.3497
=====[cccccc[eeeeemmmmeeeee]ccc333ccc]==	chr3:38178264-38178499(-)$1	235	170	210	14.4394
gggdddd[eeeee[bboooooobbeeeeedddd]gggggg	chr7:105162544-105162788(-)$1	244	75	115	14.7270
!!bb[dddd!!ddddoooooodddd]dddd]bb333hhhh	chr1:230778164-230778400(+)$1	236	63	103	13.6681
cc!!ccca[gggggggooooooggggggg]a4444ccc22	chr3:155571933-155572207(-)$1	274	1	41	16.4658
ccc[ffffff[eeeeeooooooeeeeeffffff]ccc22a	chr16:29817846-29818129(+)$1	283	61	101	14.9148
e[a[bbccc!!eeeeemmmmeeeee333ccc333bb]a]e	chr10:32217508-32217739(-)$1	231	58	98	13.0868
[a[eeeee"""ddddbboooooobb]dddd]eeeee]a33	chr2:131850798-131851113(-)$1	315	202	242	14.0375
iiiiiii[hhhhhhhhoooooohhhhhhhh]iiiiiiiii	chr7:75508255-75508522(+)$1	267	154	194	14.8715
gggggeeeeea[eeeeellleeeee]a]eeeeeiiiiiii	chr12:6602231-6602480(-)$1	249	49	89	13.1444
#============!!ddddllldddd============44	chr20:1373504-1373732(-)$1	228	136	176	15.2024
dddd[ccc"""bb[cccooooooccc]bb4444ccc]ddd	chr19:18451302-18451631(+)$1	329	183	223	15.2244
dddd[ccc!!ccc[bboooooobb]ccccccddddggggg	chr1:55352691-55352966(-)$1	275	169	209	15.4925
dddd[dddd[dddd[aooooooadddddddd]dddd]a]b	chr22:18257044-18257333(-)$1	289	186	226	13.5532
c]ccc:==========oooooo==========ccc[dddd	chr11:77300933-77301191(+)$1	258	83	123	15.8803
[ddddccc[eeeee[bboooooobb]eeeee]ccc4444d	chr7:66406734-66406950(+)$1	216	96	136	13.9225
============"""bbnnnnnbb4444============	chr1:36929733-36930025(-)$1	292	88	128	15.6731
FFFFccc####eeeeeooooooeeeee4444cccddddoo	chr2:32502999-32503285(+)$1	286	223	263	15.3958
g"""ccc####eeeeeooooooeeeee4444ccc333ggg	chr15:40331193-40331415(-)$1	222	23	63	19.3032
!!cccbbccc[eeeeennnnneeeee22ccc22bb]ccc3	chr9:101867318-101867621(+)$1	303	134	174	12.7982
!!ccc$$$$$ffffffooooooffffff4444ccc4444c	chr2:54683463-54683752(+)$1	289	82	122	15.0539
ggg[dddd"""a[eeeeellleeeeea]dddd22gggggg	chr16:85044889-85045192(-)$1	303	21	61	13.9316
ccc[bb[bb[bb!!bboooooobb4444bb]bb]bb]ccc	chr2:27301654-27301909(+)$1	255	133	173	13.8940
ddd[a!!eeeee!!bboooooobbeeeee22a]dddd]cc	chr2:74756452-74756709(-)$1	257	8	48	14.5137
gg[bbccc$$$$$cccooooooccc4444ccc]bb]gggg	chr11:125465674-125465923(+)$1	249	97	137	15.9053
gggg[dddd####cccooooooccc22dddd22ggggggg	chrX:102939994-102940270(-)$1	276	20	60	15.7771
gggg"""bb[a[ddddnnnnndddd]a]bb333ggggggg	chr21:18984915-18985307(-)$1	392	253	293	13.7454
========================[iiiiiiiiiccc[a!	chr20:44420520-44420784(+)$1	264	99	139	13.3465

#otherMatches

#Seq PSSM
UCUGCGGUUUCGGCUGCAGCAGCUGGAGGCCCUGCGGAGG	chr17:19552212-19552502(+)$1	290	128	168	15.3486
CGGCUCGGAGGCUCCCGGCGGAGAGGAGGcggcccgcccg	chr1:33815098-33815394(-)$1	296	74	114	15.8477
GGUCCCCAACUCCUGGAGUCCCCUGGGAGCUGCCGCUGCA	chr1:67519587-67519877(-)$1	290	90	130	16.4490
CGCAGGCUUGGCUGCGCCCUCUCGCGCCGCACGCUCUGCG	chr5:130500861-130501076(-)$1	215	82	122	15.9384
CUGACCCAGGCCCCUGCCCAUGCGGGGCGCCCCUGGCUCG	chr22:34316183-34316559(-)$1	376	269	309	12.6432
CUGUGGCGGCGGCCAGGAUCAUGUCGGGUCGCCGCUGCGC	chr10:93558301-93558547(+)$1	246	126	166	15.2489
GACCCGGGAGAGAGCUAGGCCGAGUCCACCGCCCGAGUCU	chr2:20646866-20647104(+)$1	238	26	66	16.0902
GCUGGGUCUGGGUCUGACCCCACCGACCCUGGCUCAGGAU	chr14:21161642-21161904(+)$1	262	119	159	16.3808
CUGUCUCUUGCUUCAACAGUGUUUGGACGGAACAGAUCCG	chr19:49468563-49468789(+)$1	226	24	64	20.1143
UGGUGUCCUGUGGUUCGUCUCAGUCACUACAGGACCCUGG	chr1:62190618-62190893(-)$1	275	160	200	17.2862
GGCGGCCGCUGUGCGCAAUCAGUGCAGGCUCCCGCCCGAC	chr15:81293820-81294083(+)$1	263	13	53	14.0388
AGCCAGGGAGGGUGGCAGGGAGGCCACGUGAUCCGAGUCC	chr16:30075643-30075860(+)$1	217	38	78	14.0270
GACAACGAUUCGGCUGUGACGCGACAACGAUUCGGCUGUG	chrX:153607600-153607878(+)$1	278	81	121	15.4180
UCUGGGGUUGUGCGCGUCGGGUUGCGUCUCCAggccgggg	chr14:53162341-53162647(-)$1	306	76	116	19.1694
ACuccuagccucacccacuccgggcguguggccgugggcc	chr10:100206481-100206739(-)$1	258	207	247	15.3912
CCGCCGCCGCCGCCGCCGACUCGGCCGGUGGCGGUGUGGG	chr9:5629129-5629416(+)$1	287	68	108	14.0501
CUUCCUGCCGCGCGGGGCCAUUUCCGCUGCUGCUUCUGUG	chr22:42084697-42084973(-)$1	276	54	94	14.5061
uggcgccggccggggcgggggAGCCCAAAAGACCGGCUGC	chr20:25176267-25176534(+)$1	267	136	176	15.7607
GGCAAGCUACGGCCUGGGCUAGGUGAGCUGCCUCUGCCCC	chr22:39131753-39132008(-)$1	255	107	147	14.2378
AGCGGUGUAGCUGCGCAGCGUCGCGCGCGCUACCGCACCC	chr8:29940382-29940677(-)$1	295	121	161	15.3084
cccgccccCAACCUGAGGCGCUCGCGCGGGGCGGGGCGGC	chr16:89894817-89895143(+)$1	326	24	64	16.4973
GCCGCAUCAAACAGAGUGAACUUUCUGCCAAGAUGCGGUU	chr19:45419352-45419597(+)$1	245	193	233	20.4303
AGGCCGGGCCGGCCGCCCAGACGCUGCCCGCGGGCCCGGC	chr19:1941202-1941430(+)$1	228	160	200	17.9106
UGCUGUCUCGCUCAGUCUUUCCAGACCAGCGGGGCAGCAC	chr22:19024795-19025043(-)$1	248	38	78	15.3497
GUGUGGGAAGACGCCGGCGCGGGCUGGGGUCCGGUUCGUA	chr3:38178264-38178499(-)$1	235	170	210	14.4394
GGCCGCGGCGCGUCGCUGCGCCGCACGUGUGCGAGCCCGG	chr7:105162544-105162788(-)$1	244	75	115	14.7270
UGUUGGCGGAAGCGGACCCCCCUGUGCCGUGGAAACUGGC	chr1:230778164-230778400(+)$1	236	63	103	13.6681
UGGAGUCCUGUAGAGAAAGUGCUCUCUGCCGCAUUGAUAG	chr3:155571933-155572207(-)$1	274	1	41	16.4658
UGCGUUcggcgcggcccagcccggccggccgggggcggcg	chr16:29817846-29818129(+)$1	283	61	101	14.9148
CGCGUCGUCGACCCGCAGCCGCGGGGCGGACUAAGAAGGG	chr10:32217508-32217739(-)$1	231	58	98	13.0868
UCGGAGGGUCAGCCUCUUAUCGUAGCAGGUCUCCUCGGCA	chr2:131850798-131851113(-)$1	315	202	242	14.0375
UCGGGGCCCGGGUGUCGCAGCUGGUGCUUGUGUCCCGAGG	chr7:75508255-75508522(+)$1	267	154	194	14.8715
CCCACAGCUGCCUGGGUAAGGCCCAAGAUGGCUGUCUUCG	chr12:6602231-6602480(-)$1	249	49	89	13.1444
GGCGCGCGGCGGCUCGGAGUACCUCUGCCGCCGCGCGCAU	chr20:1373504-1373732(-)$1	228	136	176	15.2024
CCCGCCAUGGAGCAGCCGAGGAAGGCGGUGGUAGUGACGG	chr19:18451302-18451631(+)$1	329	183	223	15.2244
GCACCAUGGAGCCCGCCGUGUCGCUGGCCGUGUGCGCGCU	chr1:55352691-55352966(-)$1	275	169	209	15.4925
GGUGAGUGCACCCGCGCCCCUCCCGGGGUACGCGCCGAGC	chr22:18257044-18257333(-)$1	289	186	226	13.5532
CGCUCAGGCGGCGACGGAGCCAUGUCGCCGCUGCUGGGGC	chr11:77300933-77301191(+)$1	258	83	123	15.8803
UCAGGUGGAGCUGAUCAGAAUAAUGUUCAGCAUCAACCCC	chr7:66406734-66406950(+)$1	216	96	136	13.9225
GGUCCGUGCCGCAAAGCGAAcggcggccgcggcgcgggcc	chr1:36929733-36930025(-)$1	292	88	128	15.6731
AGAUGCAGCCUCCGGGCCCGCCCCCGGCCUAUGCCCCCAC	chr2:32502999-32503285(+)$1	286	223	263	15.3958
CGCCCAGCCUAGGCCGAACUUCCGGCUCUCACUGCUAGGG	chr15:40331193-40331415(-)$1	222	23	63	19.3032
ggccgggccgggcCACAGGCGGUGGCGGCGGGACCAUGGA	chr9:101867318-101867621(+)$1	303	134	174	12.7982
CCGGCCCCAGCCGCGGACAGACCCGCGGAGUCGCCUCCCG	chr2:54683463-54683752(+)$1	289	82	122	15.0539
CGGCGUGACGUCACUGACCUCGUCGGGUUCACUUCCGGCG	chr16:85044889-85045192(-)$1	303	21	61	13.9316
CGUGUGGCCGGGGGCUAUCAGAAGGAAACUGGGACGGACG	chr2:27301654-27301909(+)$1	255	133	173	13.8940
AGACCCGGCGGGAAGAGACCGAUCCCCGCGUGCUCUCGGC	chr2:74756452-74756709(-)$1	257	8	48	14.5137
UUAGCUGAUCGUCGUGUGUUGCCACCCAUUCAUGUCAAGA	chr11:125465674-125465923(+)$1	249	97	137	15.9053
AAAGCCAUAUCUCAUAUCUUUUUAUUUUAUGUUCUUUCUU	chrX:102939994-102940270(-)$1	276	20	60	15.7771
GCCGAAUCUCCGGCCGAAGAGCGGCGGCGGCAGCGGCGGU	chr21:18984915-18985307(-)$1	392	253	293	13.7454
GGAGUUGUGGGGGCCGGGGGCGCCAUGGGAGCCACUGGCG	chr20:44420520-44420784(+)$1	264	99	139	13.3465

#DB
((((((((((((((((...)))))))))...)))))))))	chr17:19552212-19552502(+)$1	1	128	168	15.3486
.(((..((.(.(((((......).)))).)..)).))).)	chr1:33815098-33815394(-)$1	1	74	114	15.8477
(((...((.(((((((......))))))).))..))))))	chr1:67519587-67519877(-)$1	1	90	130	16.4490
((..(((...((.((((......)))).))..))).))))	chr5:130500861-130501076(-)$1	1	82	122	15.9384
))))))))(((((((((....)))))).)))(((((((((	chr22:34316183-34316559(-)$1	1	269	309	12.6432
(.((((((((((((..(((...))).))))))))))))))	chr10:93558301-93558547(+)$1	1	126	166	15.2489
(((.((((...(.(((......))).)....)))).))))	chr2:20646866-20647104(+)$1	1	26	66	16.0902
.(((((((.(((((.(......).))))).))))))).))	chr14:21161642-21161904(+)$1	1	119	159	16.3808
((((.(((...(((((......))))).))))))))))))	chr19:49468563-49468789(+)$1	1	24	64	20.1143
.((.((((((((((.(......)..)))))))))))).).	chr1:62190618-62190893(-)$1	1	160	200	17.2862
(((((..(((.(((((.....))))))))..)))))))..	chr15:81293820-81294083(+)$1	1	13	53	14.0388
.....(((.(.(((((......))))).)..)))..))))	chr16:30075643-30075860(+)$1	1	38	78	14.0270
((((.(((.(((..(((......))).))).)))..))).	chrX:153607600-153607878(+)$1	1	81	121	15.4180
(((((((....(((((......))))))))))))))....	chr14:53162341-53162647(-)$1	1	76	116	19.1694
((.....(((.(((((......)).))).))).)))))))	chr10:100206481-100206739(-)$1	1	207	247	15.3912
((((.(((((((((((((...))).)))))))))))))).	chr9:5629129-5629416(+)$1	1	68	108	14.0501
(.....((.(((((((......))))).)).))....)))	chr22:42084697-42084973(-)$1	1	54	94	14.5061
((((((((((..((((......))))....).))))).))	chr20:25176267-25176534(+)$1	1	136	176	15.7607
((((.(((...(((((...))))).)))))))))).)))(	chr22:39131753-39132008(-)$1	1	107	147	14.2378
.(((((..((((((((......))))).))))))))))))	chr8:29940382-29940677(-)$1	1	121	161	15.3084
((((((((...(.((((...)))).).)))))))))))))	chr16:89894817-89895143(+)$1	1	24	64	16.4973
((((((((...(((((......)))))....)))))))))	chr19:45419352-45419597(+)$1	1	193	233	20.4303
.((((((((((((.((......)).)))....))))))))	chr19:1941202-1941430(+)$1	1	160	200	17.9106
((((((((((((..((((....)))).)))))))))))))	chr22:19024795-19025043(-)$1	1	38	78	15.3497
(((((.((((((.(((((....))))).)))...))).))	chr3:38178264-38178499(-)$1	1	170	210	14.4394
(((((((.(((((.((......))))))))))).))))))	chr7:105162544-105162788(-)$1	1	75	115	14.7270
..((.((((..((((......)))).)))).))...))))	chr1:230778164-230778400(+)$1	1	63	103	13.6681
((..((((.(((((((......))))))).)....)))..	chr3:155571933-155572207(-)$1	1	1	41	16.4658
(((.((((((.(((((......))))))))))).)))..)	chr16:29817846-29818129(+)$1	1	61	101	14.9148
(.(.(((((..(((((....)))))...)))...)).).)	chr10:32217508-32217739(-)$1	1	58	98	13.0868
.(.(((((...((((((......)).)))).))))).)..	chr2:131850798-131851113(-)$1	1	202	242	14.0375
(((((((.((((((((......)))))))).)))))))))	chr7:75508255-75508522(+)$1	1	154	194	14.8715
)))))((((((.(((((...))))).).)))))(((((((	chr12:6602231-6602480(-)$1	1	49	89	13.1444
.((((((((((((..((((...))))))))))))))))..	chr20:1373504-1373732(-)$1	1	136	176	15.2024
((((.(((...((.(((......))).))....))).)))	chr19:18451302-18451631(+)$1	1	183	223	15.2244
((((.(((..(((.((......)).)))))))))))))))	chr1:55352691-55352966(-)$1	1	169	209	15.4925
((((.((((.((((.(......))))))))).)))).).)	chr22:18257044-18257333(-)$1	1	186	226	13.5532
).))).((((((((((......))))))))))(((.((((	chr11:77300933-77301191(+)$1	1	83	123	15.8803
.(((((((.(((((.((......)).))))).)))....)	chr7:66406734-66406950(+)$1	1	96	136	13.9225
((((((((((((...((.....))....))))))))))))	chr1:36929733-36930025(-)$1	1	88	128	15.6731
))))(((....(((((......)))))....)))((((..	chr2:32502999-32503285(+)$1	1	223	263	15.3958
(...(((....(((((......)))))....)))...)))	chr15:40331193-40331415(-)$1	1	23	63	19.3032
..((((((((.(((((.....)))))..)))..)).))).	chr9:101867318-101867621(+)$1	1	134	174	12.7982
..(((.....((((((......))))))....)))....)	chr2:54683463-54683752(+)$1	1	82	122	15.0539
(((.((((...(.(((((...)))))).))))..))))))	chr16:85044889-85045192(-)$1	1	21	61	13.9316
(((.((.((.((..((......))....)).)).)).)))	chr2:27301654-27301909(+)$1	1	133	173	13.8940
(((.(..(((((..((......)))))))..).)))).))	chr2:74756452-74756709(-)$1	1	8	48	14.5137
((.(((((.....(((......)))....))).)).))))	chr11:125465674-125465923(+)$1	1	97	137	15.9053
((((.((((....(((......)))..))))..)))))))	chrX:102939994-102940270(-)$1	1	20	60	15.7771
((((...((.(.((((.....)))).).))...)))))))	chr21:18984915-18985307(-)$1	1	253	293	13.7454
))))))))))))((((((((((((.((((((((((((.(.	chr20:44420520-44420784(+)$1	1	99	139	13.3465

#PSSM
g : 0.25	[ : 0.13	d : 0.13	i : 0.11	= : 0.09	c : 0.07	! : 0.05	e : 0.03	h : 0.01	+ : 0.01	# : 0.01	F : 0.01	
g : 0.25	i : 0.13	d : 0.13	= : 0.11	c : 0.09	! : 0.05	[ : 0.03	b : 0.01	+ : 0.01	$ : 0.01	e : 0.01	a : 0.01	] : 0.01	F : 0.01	" : 0.01	
g : 0.19	i : 0.13	c : 0.13	= : 0.13	d : 0.13	! : 0.03	b : 0.03	$ : 0.03	[ : 0.03	+ : 0.01	e : 0.01	a : 0.01	F : 0.01	" : 0.01	
g : 0.15	= : 0.13	[ : 0.13	i : 0.11	d : 0.11	c : 0.09	" : 0.03	! : 0.03	$ : 0.03	e : 0.03	b : 0.03	+ : 0.01	F : 0.01	
[ : 0.17	= : 0.15	c : 0.13	i : 0.09	g : 0.07	d : 0.07	e : 0.05	b : 0.05	" : 0.03	$ : 0.03	! : 0.01	+ : 0.01	f : 0.01	a : 0.01	
c : 0.25	= : 0.15	d : 0.11	i : 0.09	e : 0.07	! : 0.05	$ : 0.05	b : 0.05	" : 0.03	g : 0.01	[ : 0.01	f : 0.01	: : 0.01	
c : 0.29	= : 0.17	d : 0.11	i : 0.09	b : 0.07	! : 0.05	e : 0.05	$ : 0.03	g : 0.01	f : 0.01	[ : 0.01	" : 0.01	
c : 0.27	= : 0.17	b : 0.09	d : 0.09	e : 0.07	i : 0.05	# : 0.05	[ : 0.03	" : 0.01	g : 0.01	! : 0.01	a : 0.01	f : 0.01	$ : 0.01	
" : 0.17	[ : 0.15	= : 0.15	c : 0.13	e : 0.07	# : 0.05	d : 0.05	i : 0.03	$ : 0.03	b : 0.03	f : 0.01	h : 0.01	! : 0.01	
" : 0.17	= : 0.15	c : 0.13	e : 0.09	# : 0.07	a : 0.05	! : 0.05	[ : 0.05	i : 0.03	g : 0.03	$ : 0.03	b : 0.01	f : 0.01	h : 0.01	
= : 0.15	" : 0.15	[ : 0.11	c : 0.11	e : 0.07	# : 0.07	b : 0.05	! : 0.05	g : 0.03	a : 0.03	i : 0.01	h : 0.01	d : 0.01	f : 0.01	$ : 0.01	
e : 0.33	= : 0.15	c : 0.09	d : 0.07	b : 0.05	a : 0.05	g : 0.03	f : 0.03	[ : 0.03	i : 0.01	! : 0.01	h : 0.01	$ : 0.01	# : 0.01	
e : 0.33	d : 0.11	= : 0.11	[ : 0.09	! : 0.07	c : 0.05	g : 0.03	f : 0.03	i : 0.01	h : 0.01	b : 0.01	" : 0.01	$ : 0.01	# : 0.01	
e : 0.35	d : 0.15	= : 0.09	! : 0.09	c : 0.07	[ : 0.07	g : 0.03	f : 0.03	i : 0.01	h : 0.01	" : 0.01	
e : 0.31	d : 0.15	b : 0.11	c : 0.09	[ : 0.07	= : 0.05	g : 0.03	f : 0.03	! : 0.03	i : 0.01	h : 0.01	" : 0.01	
e : 0.31	b : 0.17	d : 0.11	c : 0.11	a : 0.07	g : 0.03	f : 0.03	= : 0.03	i : 0.01	! : 0.01	o : 0.01	h : 0.01	
o : 0.56	d : 0.07	c : 0.07	n : 0.05	e : 0.05	b : 0.05	l : 0.03	f : 0.01	m : 0.01	= : 0.01	
o : 0.66	l : 0.07	n : 0.07	m : 0.03	c : 0.03	d : 0.03	e : 0.03	= : 0.01	
o : 0.66	l : 0.11	m : 0.07	n : 0.07	c : 0.01	d : 0.01	= : 0.01	
o : 0.66	l : 0.11	m : 0.07	n : 0.07	i : 0.01	e : 0.01	= : 0.01	
o : 0.66	l : 0.07	n : 0.07	m : 0.05	e : 0.05	i : 0.01	d : 0.01	= : 0.01	
o : 0.64	e : 0.11	d : 0.05	l : 0.03	m : 0.03	i : 0.01	f : 0.01	c : 0.01	n : 0.01	= : 0.01	
e : 0.31	b : 0.13	d : 0.11	o : 0.09	c : 0.09	a : 0.07	g : 0.03	f : 0.03	= : 0.03	i : 0.01	h : 0.01	
e : 0.31	b : 0.17	d : 0.15	c : 0.13	] : 0.03	g : 0.03	f : 0.03	= : 0.03	i : 0.01	2 : 0.01	h : 0.01	
e : 0.35	d : 0.15	c : 0.11	] : 0.11	g : 0.03	f : 0.03	b : 0.03	4 : 0.03	i : 0.01	2 : 0.01	h : 0.01	= : 0.01	[ : 0.01	
e : 0.31	] : 0.13	d : 0.11	c : 0.11	= : 0.05	4 : 0.05	i : 0.03	g : 0.03	f : 0.03	a : 0.01	3 : 0.01	h : 0.01	2 : 0.01	
e : 0.27	d : 0.09	= : 0.09	c : 0.09	a : 0.07	] : 0.07	4 : 0.07	i : 0.03	g : 0.03	f : 0.03	2 : 0.03	3 : 0.01	h : 0.01	
] : 0.19	4 : 0.15	= : 0.13	c : 0.11	d : 0.09	e : 0.07	i : 0.05	g : 0.03	f : 0.03	3 : 0.01	h : 0.01	b : 0.01	2 : 0.01	
c : 0.17	= : 0.15	4 : 0.15	b : 0.09	e : 0.09	d : 0.09	g : 0.05	] : 0.03	i : 0.03	3 : 0.01	a : 0.01	f : 0.01	h : 0.01	
c : 0.19	= : 0.15	4 : 0.15	d : 0.11	b : 0.07	] : 0.05	2 : 0.05	i : 0.03	e : 0.03	3 : 0.01	a : 0.01	g : 0.01	f : 0.01	h : 0.01	
c : 0.17	= : 0.15	4 : 0.13	] : 0.11	2 : 0.09	d : 0.07	3 : 0.03	g : 0.03	i : 0.03	a : 0.03	e : 0.03	b : 0.01	f : 0.01	
= : 0.17	i : 0.11	c : 0.11	2 : 0.07	b : 0.07	d : 0.07	4 : 0.07	g : 0.05	] : 0.05	e : 0.05	3 : 0.05	f : 0.01	a : 0.01	
c : 0.15	= : 0.15	i : 0.13	b : 0.07	2 : 0.07	d : 0.07	e : 0.07	g : 0.05	] : 0.05	3 : 0.05	4 : 0.03	f : 0.01	
c : 0.17	i : 0.15	= : 0.15	g : 0.11	d : 0.07	b : 0.05	e : 0.05	3 : 0.05	] : 0.05	2 : 0.03	4 : 0.03	
i : 0.15	c : 0.15	= : 0.15	g : 0.15	d : 0.09	b : 0.07	e : 0.05	2 : 0.03	4 : 0.03	3 : 0.03	] : 0.01	
i : 0.15	g : 0.15	c : 0.11	= : 0.11	] : 0.09	d : 0.07	b : 0.05	4 : 0.05	e : 0.05	2 : 0.03	3 : 0.03	[ : 0.01	
g : 0.19	c : 0.17	i : 0.13	= : 0.11	d : 0.11	] : 0.09	4 : 0.07	b : 0.01	e : 0.01	h : 0.01	3 : 0.01	
g : 0.19	i : 0.13	c : 0.13	= : 0.11	d : 0.11	] : 0.09	4 : 0.05	a : 0.05	e : 0.01	h : 0.01	2 : 0.01	[ : 0.01	
g : 0.19	i : 0.13	c : 0.11	= : 0.09	d : 0.09	4 : 0.07	] : 0.05	2 : 0.05	h : 0.03	a : 0.03	b : 0.01	e : 0.01	3 : 0.01	o : 0.01	
g : 0.19	i : 0.15	d : 0.11	= : 0.09	2 : 0.05	e : 0.05	c : 0.05	h : 0.03	b : 0.03	] : 0.03	4 : 0.03	3 : 0.03	a : 0.01	o : 0.01	! : 0.01	

#score	781.4137355111226
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_transcript_m1_run2.txt

#BEAR
eedddd^^^^^^^^^^^^^^^^^^^^^^^	chr6:44219800-44220032(+)$1	232	99	128	33.5081
iiiiiiiiiyyyyyyyyyyyyyyyyiiii	chr17:74731023-74731348(-)$1	325	201	230	22.8963
ffffff^^^^^^^^^^^^^^^^^^^^fff	chr16:11933538-11933806(-)$1	268	208	237	31.0209
==eeeee^^^^^^^^^^^^^^^^^^eeee	chr17:8280773-8281019(-)$1	246	153	182	30.3485
ccdddd^^^^^^^^^^^^^^^^^^^^^^^	chr2:47387783-47388044(-)$1	261	25	54	33.6403
ffffffyyyyyyyyyyyyyyyyffffff:	chr2:102472339-102472594(+)$1	255	173	202	21.6434
ccc^^^^^^^^^^^^^^^^^^^^^^^^cc	chrX:70787817-70788067(+)$1	250	216	245	32.4092
d[dddd^^^^^^^^^^^^^^^^^^^dddd	chr1:205696725-205697031(-)$1	306	146	175	30.7954
""dddd^^^^^^^^^^^^^^^^^^^^^dd	chr8:117862756-117863032(-)$1	276	179	208	32.8594
b[bb^^^^^^^^^^^^^^^^^^^^^^^^b	chr17:66508066-66508390(+)$1	324	50	79	32.4913
ffffff^^^^^^^^^^^^^^^^^^^^fff	chr12:6711460-6711704(-)$1	244	20	49	31.0209
bb[dddd^^^^^^^^^^^^^^^^^^dddd	chr10:1058300-1058579(+)$1	279	247	276	28.9579
!eeeee^^^^^^^^^^^^^^^^^^^^^^^	chr2:203168008-203168235(+)$1	227	99	128	33.8613
eeeccc^^^^^^^^^^^^^^^^^^^^^^^	chr2:11338565-11338814(-)$1	249	156	185	33.3929
c[eeeee^^^^^^^^^^^^^^^^^^^^^e	chr17:7082242-7082503(-)$1	261	115	144	32.6913
!!bb^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:56510870-56511092(+)$1	222	44	73	33.4209
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:169700491-169700800(+)$1	309	94	123	33.3159
c[dddd^^^^^^^^^^^^^^^^^^^^^^^	chr20:40161786-40162097(-)$1	311	121	150	33.9997
f"""cccyyyyyyyyyyyyyyyycccfff	chr11:118888610-118888850(-)$1	240	121	150	23.9534
iiiiii^^^^^^^^^^^^^^^^^^^^^^^	chr8:17820506-17820788(+)$1	282	54	83	33.5055
"""ccc^^^^^^^^^^^^^^^^^^^^^cc	chr19:15366774-15367122(-)$1	348	163	192	32.7745
ffffffyyyyyyyyyyyyyyyyffffffC	chr2:29169366-29169690(+)$1	324	292	321	21.3720
!!eeeeeyyyyyyyyyyyyyyyyeeeee]	chr14:23549569-23549841(-)$1	272	226	255	24.7407
!!ccc^^^^^^^^^^^^^^^^^^^^^^^c	chrX:20173157-20173436(-)$1	279	193	222	33.5177
##eeeeeyyyyyyyyyyyyyyyyeeeee6	chr14:73577478-73577780(+)$1	302	195	224	24.4243
ggggggg^^^^^^^^^^^^^^^^^^^ggg	chr6:31857143-31857456(-)$1	313	198	227	30.5746
=[dddda^^^^^^^^^^^^^^^^^^a]dd	chr2:178080783-178081038(+)$1	255	57	86	31.0312
ggggggg^^^^^^^^^^^^^^^^^^gggg	chr2:233681485-233681853(+)$1	368	2	31	29.4953
ieeeee^^^^^^^^^^^^^^^^^^^^^ee	chr12:104341038-104341260(+)$1	222	46	75	32.7956
bb^^^^^^^^^^^^^^^^^^^^^^^^bb:	chr12:104341088-104341309(+)$1	221	36	65	30.0097
!!dddd^^^^^^^^^^^^^^^^^^^^^^^	chr17:4575470-4575730(-)$1	260	175	204	34.0971
!!eeeee^^^^^^^^^^^^^^^^^^eeee	chr2:232577413-232577637(+)$1	224	139	168	30.5953
c[bb[bb^^^^^^^^^^^^^^^^^^^bb]	chr20:13756488-13756816(-)$1	328	127	156	29.9637
fff^^^^^^^^^^^^^^^^^^^^^^^fff	chr6:108204141-108204418(-)$1	277	71	100	31.2163
dddd^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:16029295-16029630(-)$1	335	123	152	33.2619
c[dddd^^^^^^^^^^^^^^^^^^^^^dd	chr17:44248110-44248399(-)$1	289	217	246	32.8890
CCdddd^^^^^^^^^^^^^^^^^^^^^^^	chr17:15419680-15419992(-)$1	312	39	68	31.2908
hhhhhh^^^^^^^^^^^^^^^^^^^^^^^	chr10:12076961-12077366(-)$1	405	34	63	32.2476
eeeeeeeeeyyyyyyyyyyyyyyyyeeee	chr19:57325198-57325479(-)$1	281	162	191	23.6365
d"""bb^^^^^^^^^^^^^^^^^^^^^bb	chr17:16024439-16024684(-)$1	245	134	163	31.6175
eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr2:238671923-238672185(+)$1	262	49	78	33.6340
eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr12:6879021-6879266(+)$1	245	102	131	33.6340
eeeeeeeeeyyyyyyyyyyyyyyyyeeee	chr19:57325279-57325559(-)$1	280	242	271	23.6365
iiiiii^^^^^^^^^^^^^^^^^^^^iii	chr2:99980018-99980336(+)$1	318	79	108	31.6094
!!ddddyyyyyyyyyyyyyyyydddd]ee	chr12:6692402-6692645(-)$1	243	124	153	23.6603
c[eeeee^^^^^^^^^^^^^^^^^^^^^^	chr16:19725372-19725632(-)$1	260	125	154	33.1591
++dddd^^^^^^^^^^^^^^^^^^^^^^^	chr14:102550991-102551263(-)$1	272	73	102	32.4497
!!eeeeexxxxxxxxxxxxxxxeeeee22	chr15:69072332-69072573(-)$1	241	154	183	20.9776
========yyyyyyyyyyyyyyyy=====	chr1:109617514-109617788(-)$1	274	96	125	24.3313
gggggg^^^^^^^^^^^^^^^^^^^^^^^	chr12:6711152-6711412(-)$1	260	206	235	33.4576
d[dddd^^^^^^^^^^^^^^^^^^^^^^^	chr20:60711810-60712092(-)$1	282	117	146	33.8474

#otherMatches

#Seq PSSM
CUGCCUGAGGAUGAGGAGGAGAAGAAGAA	chr6:44219800-44220032(+)$1	232	99	128	33.5081
AAAAGGUUAUUUUGUAACAUUUGUCUAAC	chr17:74731023-74731348(-)$1	325	201	230	22.8963
AGCUGGUACCAAUAGGAAAGAAGACUCCA	chr16:11933538-11933806(-)$1	268	208	237	31.0209
AAGCUUUGAUUAAAACUUGAAACAAAGAG	chr17:8280773-8281019(-)$1	246	153	182	30.3485
AUGUGAuuuuuuuuuuuuuuuuuuuuuuu	chr2:47387783-47388044(-)$1	261	25	54	33.6403
gcgucuagaggaguuggagagaaggcgca	chr2:102472339-102472594(+)$1	255	173	202	21.6434
ACCAUAAAAUAAGUGUAAUAUAAAAUAGG	chrX:70787817-70788067(+)$1	250	216	245	32.4092
CAUCUCCCCGAGAAGCUAAAAAUAAGAGG	chr1:205696725-205697031(-)$1	306	146	175	30.7954
AACUAAUUAAUAAUUUUCAUUCCAGAUUU	chr8:117862756-117863032(-)$1	276	179	208	32.8594
ggguggaaaggagggagaaaaggcagagg	chr17:66508066-66508390(+)$1	324	50	79	32.4913
CUCUUUGCCAAAUAUAUGUAGAAAAUGAA	chr12:6711460-6711704(-)$1	244	20	49	31.0209
GGAGUCCAAAGAAAAGAAUACACAGGGAC	chr10:1058300-1058579(+)$1	279	247	276	28.9579
GAGUCCAGagaaaaagaagaaaaagaaaa	chr2:203168008-203168235(+)$1	227	99	128	33.8613
UUUGAGAAGCAGCUAUUAACAGAAAGAAC	chr2:11338565-11338814(-)$1	249	156	185	33.3929
CUGGGAGGGGAUGGAGGAAAGAAGAAAGC	chr17:7082242-7082503(-)$1	261	115	144	32.6913
UUCAUCCCuuuuuuuuuuuuuuuuuuuuA	chr12:56510870-56511092(+)$1	222	44	73	33.4209
gcugaaaguggaaaagaagaagauaaaaa	chr3:169700491-169700800(+)$1	309	94	123	33.3159
UACUGGAGUGAAGAAGAAACGGAAGAAAA	chr20:40161786-40162097(-)$1	311	121	150	33.9997
GAAAGUCGGCCAAGAAAGACAAAGACCCA	chr11:118888610-118888850(-)$1	240	121	150	23.9534
UACAGCAAAUCCAAAUAUUUAUUUAACUC	chr8:17820506-17820788(+)$1	282	54	83	33.5055
aaguggaagagaauaaaaaaagcaaagcc	chr19:15366774-15367122(-)$1	348	163	192	32.7745
AGCCGGUCAAACUAUAUAAACUCUGGCUC	chr2:29169366-29169690(+)$1	324	292	321	21.3720
AGGAGGAAGAAAGAGAAAUAAAAUCUUCA	chr14:23549569-23549841(-)$1	272	226	255	24.7407
AAUACCACCUAAAAAUACACUGAAUAAAG	chrX:20173157-20173436(-)$1	279	193	222	33.5177
AAGCCUUGUCUGAAACCUACUCUGAGGCC	chr14:73577478-73577780(+)$1	302	195	224	24.4243
AUCAGUCAGAUAGGGUAAGAGACGGAGGC	chr6:31857143-31857456(-)$1	313	198	227	30.5746
GACAGGCAGAGUGGAAAAAAGAGAGGAUU	chr2:178080783-178081038(+)$1	255	57	86	31.0312
GCUGAUUGAAUGAACGAAUACUACUGGUC	chr2:233681485-233681853(+)$1	368	2	31	29.4953
UUAGGUGgaagaagagcccgaagaagaac	chr12:104341038-104341260(+)$1	222	46	75	32.7956
gcagaagacacaacagaagacacagagca	chr12:104341088-104341309(+)$1	221	36	65	30.0097
gaggaagaggaagaggaugaagaggaaua	chr17:4575470-4575730(-)$1	260	175	204	34.0971
GAUGACUAGACAGCAAAAAAGGAAAAGUU	chr2:232577413-232577637(+)$1	224	139	168	30.5953
gauagugaggaugaugauAAAAGUGACAG	chr20:13756488-13756816(-)$1	328	127	156	29.9637
GCUGCAGUAAAGGAAGAUGAAGAAGAAGU	chr6:108204141-108204418(-)$1	277	71	100	31.2163
CCUCGCaagaagaaaaaguagaagaaaaa	chr17:16029295-16029630(-)$1	335	123	152	33.2619
GUUGGCACAAGGAAGAAUGAAUGAAUCGC	chr17:44248110-44248399(-)$1	289	217	246	32.8890
gaccuuuaaagacaugauuaagauaaaau	chr17:15419680-15419992(-)$1	312	39	68	31.2908
GUGAGCAGCAAGGAGAGGCCAAAAGACGA	chr10:12076961-12077366(-)$1	405	34	63	32.2476
UUCAGGUAGAAGAACCAUACUAUGACUGC	chr19:57325198-57325479(-)$1	281	162	191	23.6365
UACAGCAGAAGAAACUGAGGAAAGAGAGC	chr17:16024439-16024684(-)$1	245	134	163	31.6175
CACUCAAAAUGAACCCUUAGAUAUGAAAG	chr2:238671923-238672185(+)$1	262	49	78	33.6340
cugccgaggauggagaggaggaagaugaa	chr12:6879021-6879266(+)$1	245	102	131	33.6340
UUCAGGUAGAAGAACCAUACUAUGACUGC	chr19:57325279-57325559(-)$1	280	242	271	23.6365
UUUUUGGUAGAUGACAAUGAAGGAGACAa	chr2:99980018-99980336(+)$1	318	79	108	31.6094
AAUCAUUAAACAGGAAGAAAGUGUGGAUC	chr12:6692402-6692645(-)$1	243	124	153	23.6603
CAGCUCUGAAAAGGAAGAAAAAGAAGAAG	chr16:19725372-19725632(-)$1	260	125	154	33.1591
aggauggugacaagaagaagaagaagaag	chr14:102550991-102551263(-)$1	272	73	102	32.4497
GUGGAAUAACCUAUUUUGAAAAAUUCCUA	chr15:69072332-69072573(-)$1	241	154	183	20.9776
UCUAGUUUGAGGAAGAAAAUGAAGAAAUU	chr1:109617514-109617788(-)$1	274	96	125	24.3313
CUUGGACCUAAGAAAGAGAAGAAGAGCAA	chr12:6711152-6711412(-)$1	260	206	235	33.4576
GUUGCUGAAAUUgaaaaagaaaaagaaga	chr20:60711810-60712092(-)$1	282	117	146	33.8474

#DB
((((((.......................	chr6:44219800-44220032(+)$1	1	99	128	33.5081
(((((((((................))))	chr17:74731023-74731348(-)$1	1	201	230	22.8963
((((((....................)))	chr16:11933538-11933806(-)$1	1	208	237	31.0209
(((((((..................))))	chr17:8280773-8281019(-)$1	1	153	182	30.3485
((((((.......................	chr2:47387783-47388044(-)$1	1	25	54	33.6403
((((((................)))))).	chr2:102472339-102472594(+)$1	1	173	202	21.6434
(((........................))	chrX:70787817-70788067(+)$1	1	216	245	32.4092
(.((((...................))))	chr1:205696725-205697031(-)$1	1	146	175	30.7954
..((((.....................))	chr8:117862756-117863032(-)$1	1	179	208	32.8594
(.((........................)	chr17:66508066-66508390(+)$1	1	50	79	32.4913
((((((....................)))	chr12:6711460-6711704(-)$1	1	20	49	31.0209
((.((((..................))))	chr10:1058300-1058579(+)$1	1	247	276	28.9579
.(((((.......................	chr2:203168008-203168235(+)$1	1	99	128	33.8613
((((((.......................	chr2:11338565-11338814(-)$1	1	156	185	33.3929
(.(((((.....................)	chr17:7082242-7082503(-)$1	1	115	144	32.6913
..((.........................	chr12:56510870-56511092(+)$1	1	44	73	33.4209
(((..........................	chr3:169700491-169700800(+)$1	1	94	123	33.3159
(.((((.......................	chr20:40161786-40162097(-)$1	1	121	150	33.9997
(...(((................))))))	chr11:118888610-118888850(-)$1	1	121	150	23.9534
((((((.......................	chr8:17820506-17820788(+)$1	1	54	83	33.5055
...(((.....................))	chr19:15366774-15367122(-)$1	1	163	192	32.7745
((((((................)))))))	chr2:29169366-29169690(+)$1	1	292	321	21.3720
..(((((................))))).	chr14:23549569-23549841(-)$1	1	226	255	24.7407
..(((.......................)	chrX:20173157-20173436(-)$1	1	193	222	33.5177
..(((((................))))).	chr14:73577478-73577780(+)$1	1	195	224	24.4243
(((((((...................)))	chr6:31857143-31857456(-)$1	1	198	227	30.5746
(.(((((..................).))	chr2:178080783-178081038(+)$1	1	57	86	31.0312
(((((((..................))))	chr2:233681485-233681853(+)$1	1	2	31	29.4953
((((((.....................))	chr12:104341038-104341260(+)$1	1	46	75	32.7956
((........................)).	chr12:104341088-104341309(+)$1	1	36	65	30.0097
..((((.......................	chr17:4575470-4575730(-)$1	1	175	204	34.0971
..(((((..................))))	chr2:232577413-232577637(+)$1	1	139	168	30.5953
(.((.((...................)).	chr20:13756488-13756816(-)$1	1	127	156	29.9637
(((.......................)))	chr6:108204141-108204418(-)$1	1	71	100	31.2163
((((.........................	chr17:16029295-16029630(-)$1	1	123	152	33.2619
(.((((.....................))	chr17:44248110-44248399(-)$1	1	217	246	32.8890
((((((.......................	chr17:15419680-15419992(-)$1	1	39	68	31.2908
((((((.......................	chr10:12076961-12077366(-)$1	1	34	63	32.2476
(((((((((................))))	chr19:57325198-57325479(-)$1	1	162	191	23.6365
(...((.....................))	chr17:16024439-16024684(-)$1	1	134	163	31.6175
(((((........................	chr2:238671923-238672185(+)$1	1	49	78	33.6340
(((((........................	chr12:6879021-6879266(+)$1	1	102	131	33.6340
(((((((((................))))	chr19:57325279-57325559(-)$1	1	242	271	23.6365
((((((....................)))	chr2:99980018-99980336(+)$1	1	79	108	31.6094
..((((................)))).))	chr12:6692402-6692645(-)$1	1	124	153	23.6603
(.(((((......................	chr16:19725372-19725632(-)$1	1	125	154	33.1591
..((((.......................	chr14:102550991-102551263(-)$1	1	73	102	32.4497
..(((((...............)))))..	chr15:69072332-69072573(-)$1	1	154	183	20.9776
((((((((................)))))	chr1:109617514-109617788(-)$1	1	96	125	24.3313
((((((.......................	chr12:6711152-6711412(-)$1	1	206	235	33.4576
(.((((.......................	chr20:60711810-60712092(-)$1	1	117	146	33.8474

#PSSM
c : 0.15	! : 0.15	e : 0.11	f : 0.11	i : 0.07	d : 0.07	= : 0.05	b : 0.05	g : 0.05	" : 0.03	# : 0.01	C : 0.01	h : 0.01	+ : 0.01	
[ : 0.17	e : 0.15	! : 0.13	f : 0.09	" : 0.07	i : 0.05	c : 0.05	g : 0.05	= : 0.03	b : 0.03	# : 0.01	d : 0.01	C : 0.01	h : 0.01	+ : 0.01	
e : 0.27	d : 0.25	f : 0.09	i : 0.05	c : 0.05	b : 0.05	" : 0.05	g : 0.05	[ : 0.01	^ : 0.01	h : 0.01	= : 0.01	
d : 0.27	e : 0.25	f : 0.07	^ : 0.07	i : 0.05	b : 0.05	c : 0.05	g : 0.05	" : 0.03	h : 0.01	= : 0.01	
d : 0.25	e : 0.25	^ : 0.13	f : 0.07	c : 0.07	i : 0.05	g : 0.05	[ : 0.01	h : 0.01	b : 0.01	= : 0.01	
d : 0.25	e : 0.21	^ : 0.19	f : 0.07	i : 0.05	c : 0.05	g : 0.05	b : 0.03	h : 0.01	= : 0.01	
^ : 0.60	e : 0.17	y : 0.05	g : 0.03	i : 0.01	d : 0.01	c : 0.01	a : 0.01	b : 0.01	= : 0.01	
^ : 0.78	y : 0.11	e : 0.03	i : 0.01	x : 0.01	= : 0.01	
^ : 0.78	y : 0.13	e : 0.03	i : 0.01	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.19	x : 0.01	
^ : 0.78	y : 0.13	f : 0.03	d : 0.01	e : 0.01	
^ : 0.78	y : 0.07	e : 0.05	f : 0.03	c : 0.01	d : 0.01	
^ : 0.78	y : 0.05	e : 0.05	f : 0.03	c : 0.01	d : 0.01	= : 0.01	
^ : 0.66	e : 0.13	d : 0.05	f : 0.03	i : 0.01	c : 0.01	a : 0.01	g : 0.01	= : 0.01	
^ : 0.52	e : 0.13	f : 0.11	i : 0.03	d : 0.03	g : 0.03	] : 0.03	b : 0.03	= : 0.01	
^ : 0.41	e : 0.15	f : 0.11	d : 0.09	b : 0.05	i : 0.03	c : 0.03	g : 0.03	2 : 0.01	= : 0.01	
^ : 0.35	e : 0.13	d : 0.09	f : 0.07	c : 0.05	i : 0.03	: : 0.03	b : 0.03	] : 0.03	g : 0.03	C : 0.01	6 : 0.01	2 : 0.01	= : 0.01	

#score	1545.6831605002537
#seq	51
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_transcript_m1_run1.txt

#BEAR
gggggga[cccaccccccmmmmccc4444ccc]a	chr11:61557166-61557414(-)$1	248	135	169	12.0766
fgggggggdddd[ccclllcccdddd22gggggg	chr17:61908982-61909249(+)$1	267	98	132	11.1930
!ggggggg"""ccc!!ccclllccc22ccc4444	chr17:16344644-16344872(+)$1	228	141	175	12.3781
dd$$$$$ccc[eeeeeooooooeeeeeccc333d	chr11:2904634-2904876(-)$1	242	181	215	12.0844
gggg####dddd[bboooooobbdddd22ggggg	chr1:173836028-173836240(-)$1	212	66	100	12.7628
ffff!!ffffff!!bboooooobb22ffffff44	chr20:5095540-5095782(-)$1	242	108	142	11.7833
[bb[ccc[ccc!!cccnnnnncccccc]ccc]bb	chr8:146015157-146015390(-)$1	233	117	151	11.8954
====!!dddd####cccmmmmccc22dddd22==	chr2:113421144-113421366(+)$1	222	87	121	11.1410
[a[bb"""dddd!!cccnnnnnccc]dddd333b	chr19:1439917-1440153(+)$1	236	89	123	11.7306
[eeeeeccc[eeeeebboooooobb22eeeee]c	chr17:74385700-74385998(-)$1	298	164	198	10.8629
dddd"""ccc[cccddddllldddd22ccc]ccc	chr6:10731054-10731342(+)$1	288	128	162	11.2475
eeeeedddd"""ddddoooooodddd]dddd]ee	chr16:89627952-89628206(+)$1	254	32	66	12.9161
ccc!!eeeee[bb"""ccclllccc333bb]eee	chr19:1598086-1598315(-)$1	229	171	205	10.4306
"""dddd$$$$$ddddoooooodddddddd]fff	chr10:27399656-27399891(-)$1	235	156	190	12.0886
ggggggg[==========mmmm==========22	chr11:62392231-62392468(-)$1	237	65	99	12.0498
:iiiiiiiii####bbnnnnnbb333iiiiiiii	chr12:57924008-57924254(-)$1	246	12	46	11.7326
"dddd!!ccc"""ddddnnnnndddd4444ccc]	chr19:1388731-1388990(+)$1	259	46	80	12.6020
eeeeegggggggddddoooooodddd22gggggg	chrX:153061854-153062108(+)$1	254	89	123	13.8338
gggdddd[bb!!ddddoooooodddd22bb]ddd	chr6:41756934-41757151(+)$1	217	78	112	13.5707
ffffff[ccccccrrrrrrrrrccc333cccfff	chr1:22357476-22357744(+)$1	268	199	233	10.8239
ffffff[ccc[eeeeeooooooeeeee4444ccc	chr3:51426534-51426781(+)$1	247	114	148	12.6656
ggggggg[ccc[cccqqqqqqqqccc]ccc333g	chr17:16342546-16342781(+)$1	235	0	34	10.6508
"ffffff[ccc"""bboooooobb]ccc333fff	chr1:116947118-116947387(+)$1	269	39	73	14.0754
$$ddddccc!!eeeeeooooooeeeee22ccc]d	chr19:17973879-17974107(+)$1	228	169	203	11.7944
eeee####bb"""ddddnnnnndddd22bb22ee	chr19:2271684-2271946(+)$1	262	177	211	11.9196
d===============lll===============	chr18:673315-673560(+)$1	245	19	53	13.1061
fffff"""dddd!!cccnnnnnccc22dddd333	chr4:76567937-76568180(-)$1	243	11	45	12.3318
cc[a[bb[ccc[ddddoooooodddd]cccbb]a	chr5:134364030-134364289(-)$1	259	113	147	13.3349
hhhh[a"""gggggggooooooggggggg22a]h	chr4:26432751-26432993(+)$1	242	115	149	12.9698
hhh[a"""ccc[ddddoooooodddd]ccc>>>>	chr20:55093248-55093513(+)$1	265	137	171	13.4981
iiiiii[dddd"""bboooooobb666666dddd	chr21:46226585-46226836(-)$1	251	135	169	11.3615
=====####iiiiiiiiillliiiiiiiii]===	chrX:23701685-23701923(+)$1	238	28	62	12.5531
eee!!eeeee[a[cccooooooccc]a]eeeee2	chr17:73126239-73126473(-)$1	234	42	76	13.7658
GGGGGggggggg[cccooooooccc22ggggggg	chr19:55897202-55897429(+)$1	227	145	179	12.7865
iiiiiii[bb"""cccooooooccc333bb]iii	chr11:60658137-60658361(-)$1	224	44	78	17.1459
""eeeee!!ccc[cccoooooocccccc22eeee	chr8:97247636-97247868(-)$1	232	15	49	13.8389
ddd[dddd[bb"""bboooooobb333bb]dddd	chr12:116396888-116397129(-)$1	241	47	81	12.5291
a[==============nnnnn=============	chr19:1258702-1258967(+)$1	265	40	74	13.5212
##ggggggg####cccooooooccc4444ggggg	chr5:76031225-76031475(+)$1	250	137	171	16.6322
===========!!ddddnnnnndddd========	chr19:1576600-1576927(-)$1	327	236	270	13.5702
:ccc[ggggggg[cccoooooocccggggggg22	chr3:9519599-9519846(+)$1	247	138	172	13.6484
ddd[a[dddd!!bb[aooooooa]bb22dddda]	chr8:144661881-144662100(-)$1	219	54	88	12.5072
d===============lll===============	chr18:673170-673404(+)$1	234	164	198	13.1061
!!dddd[dddd!!cccoooooocccdddd]dddd	chr22:20941055-20941348(+)$1	293	27	61	13.4819
ggggggg[dddd[bboooooobb]dddd333ggg	chr1:160259421-160259645(-)$1	224	174	208	12.8148
eee[ccc[bb!!cccooooooccc]bb]ccc]ee	chr19:50363780-50364083(+)$1	303	120	154	12.8830
iiiiiiiii!!ccc[aooooooa]ccc22iiiii	chr7:100882831-100883076(-)$1	245	117	151	14.9251
!!ffffffbb"""cccooooooccc22bb]ffff	chr9:123631823-123632106(-)$1	283	65	99	14.4810
cccccc!!ccc[bb[bboooooobbbbccc]ccc	chr5:149826292-149826514(-)$1	222	87	121	11.6102
gggg$$$$$bb"""cccnnnnnccc333bbgggg	chr11:65486868-65487138(+)$1	270	43	77	13.0335
::ggggggg####cccooooooccc22ggggggg	chr9:140137951-140138196(+)$1	245	30	64	14.3750

#otherMatches

#Seq PSSM
CAUCUACGUGUGAGCACCCAAGGGUAAGAGCUGC	chr11:61557166-61557414(-)$1	248	135	169	12.0766
CAGGGCGUGUGCACAGAAGCUGGCAUGUAUGCCC	chr17:61908982-61909249(+)$1	267	98	132	11.1930
UAUGUAUCAGAGGACAUGCUCAGCAGAUCCAAGA	chr17:16344644-16344872(+)$1	228	141	175	12.3781
UGGUUAUUGACAAGUGUAACUUUAUUUUCAUCGC	chr11:2904634-2904876(-)$1	242	181	215	12.0844
GCUGGGUGCAGAUGCAGUGUGGCUCUGGAUAGCA	chr1:173836028-173836240(-)$1	212	66	100	12.7628
AAAGGGUCUUGACUCUAAAUGCAGUUUUAAGAAU	chr20:5095540-5095782(-)$1	242	108	142	11.7833
UGCUGGCCGCAAAGUGGGUCUCAUUGCUGCCCGC	chr8:146015157-146015390(-)$1	233	117	151	11.8954
GUAAGAAAGAAAAAGCCUGUUGGCAAUCUUGGUU	chr2:113421144-113421366(+)$1	222	87	121	11.1410
AUCCUCCCCAGCGAGCAGCUGAUGCAGCUGUACA	chr19:1439917-1440153(+)$1	236	89	123	11.7306
ACCUGUGCUGUGCUGUGACCGCCCAGCCAGCAGA	chr17:74385700-74385998(-)$1	298	164	198	10.8629
AAUGUUAGGUGUCAGCUUUCAGGGCUCUGAAACC	chr6:10731054-10731342(+)$1	288	128	162	11.2475
GGUGGCCGGCAUUCACAAGAAGGUGGCCCGGACC	chr16:89627952-89628206(+)$1	254	32	66	12.9161
ACAAGAGGAAACCCACAGCUCAGCUUCAGGCUUC	chr19:1598086-1598315(-)$1	229	171	205	10.4306
CACUCUCCCUAAUGAAAUGUACUUCAGAGAAGCA	chr10:27399656-27399891(-)$1	235	156	190	12.0886
GGGGAGUCGGGGAAUAUUUGUGGGUAUUUUUUUU	chr11:62392231-62392468(-)$1	237	65	99	12.0498
AGGACGUGGGCCCAGCCACAUGCCAACUCAUGUC	chr12:57924008-57924254(-)$1	246	12	46	11.7326
CUGGGAAGCACCUGCGUGGCUGACGCCUCCUGUG	chr19:1388731-1388990(+)$1	259	46	80	12.6020
UGUCAUUUCCACUGAGACCGUCUUCAUUGUGGAG	chrX:153061854-153062108(+)$1	254	89	123	13.8338
CUGGCCAGGAACUUGAGUGACAUUGACCUCAUGG	chr6:41756934-41757151(+)$1	217	78	112	13.5707
UUGGGGUGCCCUUGAAAUAUUAAAGUUUGGUCCU	chr1:22357476-22357744(+)$1	268	199	233	10.8239
UUUCCUGAUGAUGCUGGCCCUACAGUACCCCCAU	chr3:51426534-51426781(+)$1	247	114	148	12.6656
GCGCUGCGGCCCGGUAUUGGACAGCCUGGCAGGG	chr17:16342546-16342781(+)$1	235	0	34	10.6508
ACUCUACCCUGGUAGGAAAGCACCGCAGCAUGUG	chr1:116947118-116947387(+)$1	269	39	73	14.0754
AAGAGGCCCAACACCUUCUUCUAGGUGCAGGGCC	chr19:17973879-17974107(+)$1	228	169	203	11.7944
GCCAAACGCAUUAACUGGCGAACAGUGCUGAGUG	chr19:2271684-2271946(+)$1	262	177	211	11.9196
uauuuuuggaauauuuuuagaauauuuuaagaau	chr18:673315-673560(+)$1	245	19	53	13.1061
UAUUGCAACCAAAUUGGCUUUACCAUCUUGGCUU	chr4:76567937-76568180(-)$1	243	11	45	12.3318
GCGCGGGUGGUGUGUGUGUUCCCACGGGCCCCGG	chr5:134364030-134364289(-)$1	259	113	147	13.3349
UCAAGUUUUUCAGCUGUUUUGUUGGUUGGUUGGU	chr4:26432751-26432993(+)$1	242	115	149	12.9698
GUGCCUCUGAGUGCGCUGCUGUGUGUUCUCUCUA	chr20:55093248-55093513(+)$1	265	137	171	13.4981
GGAUGAAUCUGUAACUUAAAUUGGGCCAAUCAGA	chr21:46226585-46226836(-)$1	251	135	169	11.3615
CAGAAAAAGUCAGUUGCUGAAGGUAACUGAAUUC	chrX:23701685-23701923(+)$1	238	28	62	12.5531
AGGCCCAGCCACCCGGUACCUCCCGAGAGGCUGU	chr17:73126239-73126473(-)$1	234	42	76	13.7658
UCCUCGCGUGGUCGCCAUCUCCGGCCCGCCGCGC	chr19:55897202-55897429(+)$1	227	145	179	12.7865
AGUUCCUGUGAGACAGGAGAGGCUGAGCCAAGGG	chr11:60658137-60658361(-)$1	224	44	78	17.1459
UCUCUGUUCGCGAUGUGACGUAACGCGCCUGCGG	chr8:97247636-97247868(-)$1	232	15	49	13.8389
AAAUGGCAGCAAAGGGUAGUUUUCAUCUGGUGUC	chr12:116396888-116397129(-)$1	241	47	81	12.5291
AGAGGGUAGAGCUCAAGGAUUUUGGGUUUUGUUU	chr19:1258702-1258967(+)$1	265	40	74	13.5212
UAACUUACAUAAAAGUAAUAUAACUGUAUUGUAA	chr5:76031225-76031475(+)$1	250	137	171	16.6322
GUGGAUGUGCUUGGAGCCUGGAGUUCGGUGCGUC	chr19:1576600-1576927(-)$1	327	236	270	13.5702
AAGUGGAGUGUUUACACCUUGCUGUAACAUUUGA	chr3:9519599-9519846(+)$1	247	138	172	13.6484
GGCUGUAGGGGAACAGCCCUGACCGUCACCCUCC	chr8:144661881-144662100(-)$1	219	54	88	12.5072
uauuuuuggaauauuuuuagaauauuuuaagaau	chr18:673170-673404(+)$1	234	164	198	13.1061
CUGGGGUUAGGUUAGCUUUCCUGCUUUUAUCUUC	chr22:20941055-20941348(+)$1	293	27	61	13.4819
gagguggagguugcauucaacugagaucauacca	chr1:160259421-160259645(-)$1	224	174	208	12.8148
GACUUCAACUGCCCAGCAACAUGGAGGAUGGUGU	chr19:50363780-50364083(+)$1	303	120	154	12.8830
AUUCGUCCUUCAGCCCCAUCAUGUGCUUUGGGAU	chr7:100882831-100883076(-)$1	245	117	151	14.9251
AGCUCCAagcagaagggccacaccugggcuuugg	chr9:123631823-123632106(-)$1	283	65	99	14.4810
GAGGUGCAAGGAGCUGGGUAUCACCGCCCUACAC	chr5:149826292-149826514(-)$1	222	87	121	11.6102
ACAGUGAGAAGGGAUCCGGAUGGGGGAGCUCUGU	chr11:65486868-65487138(+)$1	270	43	77	13.0335
GAGGAGGCUGAGGAGGAGGUGGCCUAGAGCCUUC	chr9:140137951-140138196(+)$1	245	30	64	14.3750

#DB
(((((((.((((((((((....)))....))).)	chr11:61557166-61557414(-)$1	1	135	169	12.0766
((((((((((((.(((...)))))))..))))))	chr17:61908982-61909249(+)$1	1	98	132	11.1930
.(((((((...(((..(((...)))..)))....	chr17:16344644-16344872(+)$1	1	141	175	12.3781
((.....(((.(((((......))))))))...)	chr11:2904634-2904876(-)$1	1	181	215	12.0844
((((....((((.((......))))))..)))))	chr1:173836028-173836240(-)$1	1	66	100	12.7628
((((..((((((..((......))..))))))..	chr20:5095540-5095782(-)$1	1	108	142	11.7833
.((.(((.(((..(((.....)))))).))).))	chr8:146015157-146015390(-)$1	1	117	151	11.8954
((((..((((....(((....)))..))))..))	chr2:113421144-113421366(+)$1	1	87	121	11.1410
.(.((...((((..(((.....))).))))...)	chr19:1439917-1440153(+)$1	1	89	123	11.7306
.((((((((.(((((((......))..))))).)	chr17:74385700-74385998(-)$1	1	164	198	10.8629
((((...(((.(((((((...))))..))).)))	chr6:10731054-10731342(+)$1	1	128	162	11.2475
(((((((((...((((......)))).)))).))	chr16:89627952-89628206(+)$1	1	32	66	12.9161
(((..(((((.((...(((...)))...)).)))	chr19:1598086-1598315(-)$1	1	171	205	10.4306
...((((.....((((......)))))))).)))	chr10:27399656-27399891(-)$1	1	156	190	12.0886
(((((((.((((((((((....))))))))))..	chr11:62392231-62392468(-)$1	1	65	99	12.0498
.(((((((((....((.....))...))))))))	chr12:57924008-57924254(-)$1	1	12	46	11.7326
.((((..(((...((((.....))))....))).	chr19:1388731-1388990(+)$1	1	46	80	12.6020
((((((((((((((((......))))..))))))	chrX:153061854-153062108(+)$1	1	89	123	13.8338
(((((((.((..((((......))))..)).)))	chr6:41756934-41757151(+)$1	1	78	112	13.5707
((((((.((((((.........)))...))))))	chr1:22357476-22357744(+)$1	1	199	233	10.8239
((((((.(((.(((((......)))))....)))	chr3:51426534-51426781(+)$1	1	114	148	12.6656
(((((((.(((.(((........))).)))...)	chr17:16342546-16342781(+)$1	1	0	34	10.6508
.((((((.(((...((......)).)))...)))	chr1:116947118-116947387(+)$1	1	39	73	14.0754
..(((((((..(((((......)))))..))).)	chr19:17973879-17974107(+)$1	1	169	203	11.7944
((((....((...((((.....))))..))..))	chr19:2271684-2271946(+)$1	1	177	211	11.9196
((((((((((((((((...)))))))))))))))	chr18:673315-673560(+)$1	1	19	53	13.1061
(((((...((((..(((.....)))..))))...	chr4:76567937-76568180(-)$1	1	11	45	12.3318
((.(.((.(((.((((......)))).))))).)	chr5:134364030-134364289(-)$1	1	113	147	13.3349
((((.(...(((((((......)))))))..).)	chr4:26432751-26432993(+)$1	1	115	149	12.9698
(((.(...(((.((((......)))).)))....	chr20:55093248-55093513(+)$1	1	137	171	13.4981
((((((.((((...((......))......))))	chr21:46226585-46226836(-)$1	1	135	169	11.3615
(((((....(((((((((...))))))))).)))	chrX:23701685-23701923(+)$1	1	28	62	12.5531
(((..(((((.(.(((......))).).))))).	chr17:73126239-73126473(-)$1	1	42	76	13.7658
)))))(((((((.(((......)))..)))))))	chr19:55897202-55897429(+)$1	1	145	179	12.7865
(((((((.((...(((......)))...)).)))	chr11:60658137-60658361(-)$1	1	44	78	17.1459
..(((((..(((.(((......))))))..))))	chr8:97247636-97247868(-)$1	1	15	49	13.8389
(((.((((.((...((......))...)).))))	chr12:116396888-116397129(-)$1	1	47	81	12.5291
(.((((((((((((((.....)))))))))))))	chr19:1258702-1258967(+)$1	1	40	74	13.5212
..(((((((....(((......)))....)))))	chr5:76031225-76031475(+)$1	1	137	171	16.6322
(((((((((((..((((.....))))))))))))	chr19:1576600-1576927(-)$1	1	236	270	13.5702
.(((.(((((((.(((......))))))))))..	chr3:9519599-9519846(+)$1	1	138	172	13.6484
(((.(.((((..((.(......).))..))))).	chr8:144661881-144662100(-)$1	1	54	88	12.5072
)(((((((((((((((...)))))))))))))))	chr18:673170-673404(+)$1	1	164	198	13.1061
..((((.((((..(((......))))))).))))	chr22:20941055-20941348(+)$1	1	27	61	13.4819
(((((((.((((.((......)).))))...)))	chr1:160259421-160259645(-)$1	1	174	208	12.8148
(((.(((.((..(((......))).)).))).))	chr19:50363780-50364083(+)$1	1	120	154	12.8830
(((((((((..(((.(......).)))..)))))	chr7:100882831-100883076(-)$1	1	117	151	14.9251
..((((((((...(((......)))..)).))))	chr9:123631823-123632106(-)$1	1	65	99	14.4810
((((((..(((.((.((......))))))).)))	chr5:149826292-149826514(-)$1	1	87	121	11.6102
((((.....((...(((.....)))...))))))	chr11:65486868-65487138(+)$1	1	43	77	13.0335
..(((((((....(((......)))..)))))))	chr9:140137951-140138196(+)$1	1	30	64	14.3750

#PSSM
g : 0.13	d : 0.11	f : 0.09	e : 0.09	" : 0.07	! : 0.05	[ : 0.05	= : 0.05	c : 0.05	: : 0.05	i : 0.05	h : 0.03	$ : 0.01	G : 0.01	a : 0.01	# : 0.01	
g : 0.17	e : 0.11	d : 0.09	f : 0.09	= : 0.09	c : 0.07	i : 0.07	" : 0.03	h : 0.03	! : 0.03	b : 0.01	a : 0.01	$ : 0.01	G : 0.01	[ : 0.01	# : 0.01	: : 0.01	
g : 0.21	e : 0.13	f : 0.11	= : 0.11	d : 0.11	i : 0.07	c : 0.05	[ : 0.03	h : 0.03	$ : 0.01	b : 0.01	" : 0.01	G : 0.01	
g : 0.19	f : 0.11	= : 0.11	d : 0.11	[ : 0.09	e : 0.09	i : 0.07	! : 0.03	c : 0.03	$ : 0.01	b : 0.01	a : 0.01	h : 0.01	G : 0.01	
g : 0.15	d : 0.11	f : 0.09	= : 0.09	! : 0.07	e : 0.07	i : 0.07	c : 0.05	[ : 0.05	$ : 0.03	# : 0.03	a : 0.03	b : 0.01	" : 0.01	G : 0.01	
g : 0.21	d : 0.11	" : 0.07	e : 0.07	i : 0.07	f : 0.07	= : 0.07	# : 0.05	! : 0.05	c : 0.05	$ : 0.03	b : 0.01	a : 0.01	[ : 0.01	
g : 0.19	d : 0.11	" : 0.09	c : 0.07	[ : 0.07	= : 0.07	# : 0.05	f : 0.05	e : 0.05	i : 0.05	$ : 0.03	! : 0.03	a : 0.01	b : 0.01	
[ : 0.19	g : 0.13	c : 0.13	d : 0.11	" : 0.07	= : 0.07	# : 0.05	f : 0.03	e : 0.03	$ : 0.03	i : 0.03	! : 0.03	
c : 0.27	d : 0.19	= : 0.09	g : 0.09	b : 0.09	" : 0.03	e : 0.03	$ : 0.03	i : 0.03	f : 0.01	# : 0.01	! : 0.01	[ : 0.01	
c : 0.25	d : 0.17	b : 0.13	= : 0.09	g : 0.07	" : 0.03	e : 0.03	i : 0.03	! : 0.03	# : 0.03	f : 0.01	[ : 0.01	$ : 0.01	
c : 0.17	d : 0.13	" : 0.11	[ : 0.09	= : 0.09	! : 0.09	# : 0.07	g : 0.07	b : 0.03	f : 0.01	e : 0.01	$ : 0.01	i : 0.01	
" : 0.17	! : 0.11	d : 0.09	c : 0.09	e : 0.07	# : 0.07	= : 0.07	g : 0.07	[ : 0.07	a : 0.03	f : 0.01	b : 0.01	$ : 0.01	i : 0.01	
" : 0.15	c : 0.13	[ : 0.13	! : 0.11	d : 0.11	e : 0.07	# : 0.07	= : 0.07	b : 0.05	g : 0.01	i : 0.01	
c : 0.33	d : 0.17	" : 0.09	e : 0.07	b : 0.07	= : 0.07	! : 0.05	# : 0.03	r : 0.01	g : 0.01	i : 0.01	
c : 0.35	d : 0.19	b : 0.13	e : 0.07	= : 0.07	[ : 0.05	! : 0.01	" : 0.01	r : 0.01	g : 0.01	i : 0.01	
c : 0.31	d : 0.19	b : 0.13	= : 0.07	e : 0.05	o : 0.05	a : 0.03	! : 0.01	" : 0.01	r : 0.01	q : 0.01	g : 0.01	i : 0.01	
o : 0.54	c : 0.13	d : 0.07	l : 0.05	n : 0.05	b : 0.03	= : 0.01	r : 0.01	q : 0.01	i : 0.01	
o : 0.58	n : 0.17	c : 0.05	l : 0.05	m : 0.01	d : 0.01	= : 0.01	r : 0.01	q : 0.01	i : 0.01	
o : 0.58	n : 0.17	l : 0.09	m : 0.05	c : 0.03	r : 0.01	q : 0.01	
o : 0.58	n : 0.17	l : 0.07	m : 0.05	= : 0.03	c : 0.01	r : 0.01	q : 0.01	
o : 0.58	n : 0.17	l : 0.07	m : 0.05	= : 0.03	c : 0.01	r : 0.01	q : 0.01	
o : 0.52	n : 0.11	c : 0.07	b : 0.05	= : 0.05	m : 0.03	l : 0.03	d : 0.01	r : 0.01	q : 0.01	i : 0.01	
c : 0.37	d : 0.21	b : 0.13	= : 0.07	e : 0.05	o : 0.03	a : 0.03	q : 0.01	g : 0.01	i : 0.01	
c : 0.39	d : 0.23	b : 0.11	= : 0.07	e : 0.05	] : 0.05	3 : 0.01	g : 0.01	i : 0.01	
c : 0.37	d : 0.25	= : 0.07	e : 0.05	b : 0.05	2 : 0.03	3 : 0.03	] : 0.03	g : 0.01	6 : 0.01	i : 0.01	
d : 0.25	2 : 0.17	3 : 0.11	c : 0.09	= : 0.07	e : 0.05	b : 0.05	4 : 0.03	] : 0.03	g : 0.03	6 : 0.01	i : 0.01	
2 : 0.23	d : 0.11	3 : 0.09	= : 0.09	c : 0.07	] : 0.07	4 : 0.05	e : 0.05	i : 0.03	g : 0.03	b : 0.03	f : 0.01	6 : 0.01	a : 0.01	
c : 0.17	2 : 0.15	d : 0.13	= : 0.09	4 : 0.07	3 : 0.07	g : 0.07	] : 0.05	i : 0.03	b : 0.03	f : 0.01	e : 0.01	6 : 0.01	
c : 0.19	d : 0.13	b : 0.13	g : 0.11	= : 0.09	4 : 0.07	2 : 0.07	e : 0.03	i : 0.03	3 : 0.03	f : 0.01	6 : 0.01	
c : 0.23	g : 0.13	d : 0.11	b : 0.09	= : 0.09	i : 0.05	] : 0.05	e : 0.03	4 : 0.03	3 : 0.03	2 : 0.03	f : 0.01	6 : 0.01	
g : 0.15	] : 0.13	c : 0.11	d : 0.11	3 : 0.09	= : 0.09	2 : 0.05	e : 0.05	4 : 0.03	f : 0.03	i : 0.03	b : 0.01	> : 0.01	
g : 0.17	c : 0.11	= : 0.11	f : 0.09	d : 0.09	3 : 0.07	e : 0.07	] : 0.05	i : 0.05	2 : 0.03	4 : 0.01	b : 0.01	a : 0.01	> : 0.01	
g : 0.15	= : 0.11	e : 0.11	] : 0.09	3 : 0.07	c : 0.07	f : 0.07	d : 0.07	i : 0.05	4 : 0.03	2 : 0.03	b : 0.01	> : 0.01	a : 0.01	
g : 0.17	d : 0.11	= : 0.11	e : 0.09	c : 0.07	f : 0.07	2 : 0.05	i : 0.05	a : 0.03	4 : 0.03	b : 0.03	] : 0.03	3 : 0.01	h : 0.01	> : 0.01	

#score	650.1231588689728
#seq	51
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF101EKG_SND1_transcript_m3_run1.txt

#BEAR
bccc[aqqqqqqqqa]ccc	chr7:37988472-37988746(+)$1	274	48	67	13.3578
:eeeeeqqqqqqqqeeeee	chr4:79321867-79322105(+)$1	238	214	233	15.0013
c:ddddqqqqqqqqdddde	chr6:29857238-29857482(+)$1	244	79	98	13.5645
eeecccqqqqqqqqccc]e	chr6:53135348-53135607(-)$1	259	42	61	14.6417
[eeeeeqqqqqqqqeeeee	chr20:35832187-35832393(+)$1	206	117	136	15.9727
[eeeeeqqqqqqqqeeeee	chr5:133295300-133295576(-)$1	276	227	246	15.9727
bb[cccqqqqqqqqccc]b	chr20:35835622-35835889(+)$1	267	113	132	13.2629
!!ddddqqqqqqqqdddd2	chr15:39885696-39885947(+)$1	251	45	64	14.6441
[eeeeeqqqqqqqqeeeee	chr1:43392665-43392884(-)$1	219	157	176	15.9727
ffffffqqqqqqqqfffff	chr12:104335118-104335331(+)$1	213	107	126	13.2757
feeeeeqqqqqqqqeeeee	chr2:27000916-27001157(+)$1	241	122	141	15.6881
ceeeeeqqqqqqqqeeeee	chr14:101200387-101200607(+)$1	220	8	27	15.7879
++ddddqqqqqqqqdddd>	chr11:129999841-130000062(+)$1	221	73	92	13.0439
ggggggqqqqqqqqggggg	chr12:110765515-110765762(+)$1	247	187	206	13.9971
###cccqqqqqqqqccc]h	chr16:55846831-55847055(-)$1	224	71	90	13.9616
ee[cccqqqqqqqqcccee	chr10:73590803-73591045(-)$1	242	114	133	14.6311
eeee[aqqqqqqqqaeeee	chr14:93178109-93178337(-)$1	228	101	120	15.1695
c[ddddqqqqqqqqdddd2	chr5:135379654-135379903(+)$1	249	115	134	14.3759
[eeeeeqqqqqqqqeeeee	chr12:46758077-46758285(-)$1	208	176	195	15.9727
"eeeeeqqqqqqqqeeeee	chr3:149093200-149093424(-)$1	224	47	66	16.0045
dddcccqqqqqqqqccc]d	chr11:75282973-75283256(+)$1	283	12	31	13.8753
[eeeeeqqqqqqqqeeeee	chr10:74773891-74774145(-)$1	254	79	98	15.9727
!eeeeeqqqqqqqqeeeee	chr20:35832193-35832409(+)$1	216	111	130	16.0215
"""cccqqqqqqqqccc33	chr2:20233977-20234179(-)$1	202	47	66	14.2925
!!ddddqqqqqqqqdddd2	chr1:201112868-201113157(-)$1	289	143	162	14.6441
eeeeeeqqqqqqqqeeeee	chr14:93182380-93182643(-)$1	263	60	79	15.7039
"eeeeeqqqqqqqqeeeee	chr16:55855231-55855453(-)$1	222	10	29	16.0045
ggggggqqqqqqqqggggg	chr19:15234111-15234356(-)$1	245	56	75	13.9971
$$$cccqqqqqqqqccc44	chr16:74490446-74490674(-)$1	228	23	42	13.5818
[eeeeeqqqqqqqqeeeee	chr19:6686080-6686290(-)$1	210	146	165	15.9727
b!!cccqqqqqqqqccc33	chr19:6678150-6678381(-)$1	231	166	185	14.1272
"""cccqqqqqqqqccc]c	chr12:57592147-57592384(+)$1	237	183	202	14.1832
$$ddddqqqqqqqqdddd]	chr10:101802149-101802389(-)$1	240	55	74	14.2311
!!ddddqqqqqqqqdddd2	chr3:127783625-127783829(+)$1	204	78	97	14.6441
ffffffqqqqqqqqfffff	chr10:7763553-7763769(+)$1	216	108	127	13.2757
eeeeeeqqqqqqqqeeeee	chr13:113976538-113976788(+)$1	250	69	88	15.7039
ggggggqqqqqqqqggggg	chr9:90345821-90346067(+)$1	246	79	98	13.9971
d[ddddqqqqqqqqddddd	chr12:71977748-71978018(+)$1	270	112	131	14.2433
$$$cccqqqqqqqqccc44	chr2:216269179-216269388(-)$1	209	94	113	13.5818
dddcccqqqqqqqqccc]d	chr10:7755086-7755299(+)$1	213	153	172	13.8753
eee[bbqqqqqqqqbb]ee	chr15:72637720-72637950(-)$1	230	144	163	13.4586
""ddddqqqqqqqqdddd]	chrX:130411902-130412181(-)$1	279	101	120	14.6348
!!ddddqqqqqqqqdddd2	chr14:94845700-94845906(-)$1	206	181	200	14.6441
ffffffqqqqqqqqfffff	chr16:74490528-74490753(-)$1	225	85	104	13.2757
:eeeeeqqqqqqqqeeeee	chr2:21225507-21225737(-)$1	230	64	83	15.0013
ffffffqqqqqqqqfffff	chr4:41951218-41951503(+)$1	285	149	168	13.2757
ddddddqqqqqqqqdddd5	chr1:19559359-19559597(-)$1	238	78	97	13.3452
:eeeeeqqqqqqqqeeeee	chr4:155507724-155507961(-)$1	237	126	145	15.0013
dddd[aqqqqqqqqa]ddd	chr20:23615792-23616032(-)$1	240	8	27	13.7333
Ceeeeeqqqqqqqqeeeee	chr2:128873791-128874018(+)$1	227	206	225	14.8049
!eeeeeqqqqqqqqeeeee	chr2:97399169-97399411(-)$1	242	57	76	16.0215
ffffffqqqqqqqqfffff	chr14:74952934-74953212(-)$1	278	1	20	13.2757
$$ddddqqqqqqqqdddde	chr13:24234469-24234707(+)$1	238	19	38	14.4077
ffffffqqqqqqqqfffff	chr1:92182033-92182273(-)$1	240	218	237	13.2757
"eeeeeqqqqqqqqeeeee	chr6:26158432-26158680(+)$1	248	143	162	16.0045
bb[cccqqqqqqqqccc22	chr13:113963880-113964116(+)$1	236	177	196	13.3094
ceeeeeqqqqqqqqeeeee	chrX:77112843-77113077(-)$1	234	143	162	15.7879
beeeeeqqqqqqqqeeeee	chr7:75610358-75610564(+)$1	206	46	65	15.6185
deeeeeqqqqqqqqeeeee	chr3:49570243-49570492(+)$1	249	37	56	15.6735
ggggggqqqqqqqqggggg	chr9:123768119-123768360(-)$1	241	194	213	13.9971
ggggggqqqqqqqqggggg	chr7:75609556-75609759(+)$1	203	139	158	13.9971
Aeeeeeqqqqqqqqeeeee	chr6:132271116-132271328(-)$1	212	189	208	15.0253
eeeeeaqqqqqqqqa]eee	chr1:226032852-226033115(+)$1	263	154	173	15.1216
deeeeeqqqqqqqqeeeee	chr6:31625302-31625515(+)$1	213	173	192	15.6735
ffddddqqqqqqqqdddd:	chr3:50339755-50340053(-)$1	298	129	148	13.1929
ceeeeeqqqqqqqqeeeee	chr1:55512094-55512306(+)$1	212	141	160	15.7879
[eeeeeqqqqqqqqeeeee	chrX:2853004-2853222(-)$1	218	27	46	15.9727
eeeebbqqqqqqqqbb]ee	chr5:135390385-135390604(+)$1	219	1	20	13.6982
eee[bbqqqqqqqqbb]ee	chr17:6598997-6599223(-)$1	226	84	103	13.4586
gggg[aqqqqqqqqa]ggg	chr7:899770-900089(+)$1	319	30	49	13.8483
c[ddddqqqqqqqqdddd2	chr2:10927430-10927665(-)$1	235	193	212	14.3759

#otherMatches

#Seq PSSM
ACCCUGACACAGCCCUGGG	chr7:37988472-37988746(+)$1	274	48	67	13.3578
CAGCAGUCUAGGGUUUGCU	chr4:79321867-79322105(+)$1	238	214	233	15.0013
GAGCAGAGAUACACCUGCC	chr6:29857238-29857482(+)$1	244	79	98	13.5645
GCACUGUCCCUGUUCAGCU	chr6:53135348-53135607(-)$1	259	42	61	14.6417
AGACAGCAUCCCACCUGUC	chr20:35832187-35832393(+)$1	206	117	136	15.9727
ACCUUGGAAGAAAACAGGG	chr5:133295300-133295576(-)$1	276	227	246	15.9727
GAAGCCUUCAGCGUGGCCU	chr20:35835622-35835889(+)$1	267	113	132	13.2629
ACUGGGACACCAACCCCAC	chr15:39885696-39885947(+)$1	251	45	64	14.6441
UGAUUCCCAAGUGUGAGUC	chr1:43392665-43392884(-)$1	219	157	176	15.9727
UGAAGGGGAAGUUACCUUC	chr12:104335118-104335331(+)$1	213	107	126	13.2757
AGCCGCUCAUUGCCGUGGC	chr2:27000916-27001157(+)$1	241	122	141	15.6881
CCAGGGACCUUCUGCCCUG	chr14:101200387-101200607(+)$1	220	8	27	15.7879
AACUGUUCUCUCUUGCAGC	chr11:129999841-130000062(+)$1	221	73	92	13.0439
AUGGCAAAGAAAAAUGCCA	chr12:110765515-110765762(+)$1	247	187	206	13.9971
UCACAGGUGCUGCACUGCU	chr16:55846831-55847055(-)$1	224	71	90	13.9616
AGUGGACUCCUACCUCCCU	chr10:73590803-73591045(-)$1	242	114	133	14.6311
GUCCACGUACCUGGGGGAC	chr14:93178109-93178337(-)$1	228	101	120	15.1695
CUGGAUAUGAAAAGGUCCC	chr5:135379654-135379903(+)$1	249	115	134	14.3759
ACUCCCAGGGUAAAGGGAG	chr12:46758077-46758285(-)$1	208	176	195	15.9727
AGAUGCUUUCUUCUGUAUU	chr3:149093200-149093424(-)$1	224	47	66	16.0045
GGCGCGAGGAGCUGCGCAG	chr11:75282973-75283256(+)$1	283	12	31	13.8753
ACUGUGUUUUUAUUCACAG	chr10:74773891-74774145(-)$1	254	79	98	15.9727
AGACAGCAUCCCACCUGUC	chr20:35832193-35832409(+)$1	216	111	130	16.0215
CAACCGAAACGUGCCGGAG	chr2:20233977-20234179(-)$1	202	47	66	14.2925
GGUGGACCCUCUGAUCCGA	chr1:201112868-201113157(-)$1	289	143	162	14.6441
CUCCUAAUUCUUUGUAGGA	chr14:93182380-93182643(-)$1	263	60	79	15.7039
UUCCUCACAGCACAGGGGA	chr16:55855231-55855453(-)$1	222	10	29	16.0045
GGUGGGCACAUUUCCCCGC	chr19:15234111-15234356(-)$1	245	56	75	13.9971
AUGUCCUGUCUCAUGGAAG	chr16:74490446-74490674(-)$1	228	23	42	13.5818
CUCUACCCAGGCAAGUGGG	chr19:6686080-6686290(-)$1	210	146	165	15.9727
AAACACUACCUCAUGUGGG	chr19:6678150-6678381(-)$1	231	166	185	14.1272
ACACCAAGAUCACAUGGCC	chr12:57592147-57592384(+)$1	237	183	202	14.1832
CCAGGUUAACUUCCACCUC	chr10:101802149-101802389(-)$1	240	55	74	14.2311
CCUCCUCUGCCAACAGGAA	chr3:127783625-127783829(+)$1	204	78	97	14.6441
CUGCCGGGAGACUGCGGUA	chr10:7763553-7763769(+)$1	216	108	127	13.2757
CUGCUGGACGAGAACAGCA	chr13:113976538-113976788(+)$1	250	69	88	15.7039
GGAAAACCUGCUCUUUUUU	chr9:90345821-90346067(+)$1	246	79	98	13.9971
CUGGCCUUGACCAUGGCCG	chr12:71977748-71978018(+)$1	270	112	131	14.2433
UAACAGGAUACCGACUGAC	chr2:216269179-216269388(-)$1	209	94	113	13.5818
CUUGGUGAGGUAAGGCCUG	chr10:7755086-7755299(+)$1	213	153	172	13.8753
UUCCGCUGUGAAUUGCUGA	chr15:72637720-72637950(-)$1	230	144	163	13.4586
UUCCCCCACAAUCCGGGGC	chrX:130411902-130412181(-)$1	279	101	120	14.6348
GAGGCUGAGGAAGGGGCCG	chr14:94845700-94845906(-)$1	206	181	200	14.6441
CAUUUCCUCCCACAGAAAU	chr16:74490528-74490753(-)$1	225	85	104	13.2757
ACCUGGGAUAUACACUAGG	chr2:21225507-21225737(-)$1	230	64	83	15.0013
CUUCGAUAUUCGUCUCGAA	chr4:41951218-41951503(+)$1	285	149	168	13.2757
CAGAUUAAGAAUGAGAUCA	chr1:19559359-19559597(-)$1	238	78	97	13.3452
AGGCAUUAACAGACAUGCC	chr4:155507724-155507961(-)$1	237	126	145	15.0013
CUGCUCUUUCACAUGUGUA	chr20:23615792-23616032(-)$1	240	8	27	13.7333
UACUCAUUACUGUCUGAGU	chr2:128873791-128874018(+)$1	227	206	225	14.8049
UGUUCUCUCUCUCUAGGGC	chr2:97399169-97399411(-)$1	242	57	76	16.0215
UUAGGUGGUGGGCAGCCUA	chr14:74952934-74953212(-)$1	278	1	20	13.2757
UCACCCCUCAUUUAGGGUC	chr13:24234469-24234707(+)$1	238	19	38	14.4077
AUCUGAAAAUAAAAUCAGA	chr1:92182033-92182273(-)$1	240	218	237	13.2757
UGGGGAUCAUGAAUUCCUU	chr6:26158432-26158680(+)$1	248	143	162	16.0045
GAAGAGGACAUACACUCAC	chr13:113963880-113964116(+)$1	236	177	196	13.3094
GGUGAUACAUAUGAGUUAC	chrX:77112843-77113077(-)$1	234	143	162	15.7879
GCCAUGGGCAAGUACGUGG	chr7:75610358-75610564(+)$1	206	46	65	15.6185
GAAGGGCAAGCUUACCCUU	chr3:49570243-49570492(+)$1	249	37	56	15.6735
GGAAACAUUCUCUGGUUUU	chr9:123768119-123768360(-)$1	241	194	213	13.9971
GUGGUUUUCUGCAUGGCCA	chr7:75609556-75609759(+)$1	203	139	158	13.9971
CGCCUGUGCAUGGUCAGGC	chr6:132271116-132271328(-)$1	212	189	208	15.0253
CAGGACAUCCGCAAGUUCC	chr1:226032852-226033115(+)$1	263	154	173	15.1216
UUCUUAUUGACUCCUAGGA	chr6:31625302-31625515(+)$1	213	173	192	15.6735
UACAGGCACAGCACCCUGA	chr3:50339755-50340053(-)$1	298	129	148	13.1929
CCUCUGUCUUUGCCCAGAG	chr1:55512094-55512306(+)$1	212	141	160	15.7879
UGUUCCAGCCAGAGGGAGC	chrX:2853004-2853222(-)$1	218	27	46	15.9727
CAUCACCCUUUCUUGUAGA	chr5:135390385-135390604(+)$1	219	1	20	13.6982
AUCUGCUUCUUCCUGCUGG	chr17:6598997-6599223(-)$1	226	84	103	13.4586
UUUUCCGAAGAUCAGCAAG	chr7:899770-900089(+)$1	319	30	49	13.8483
ACGCAAGAUGAAAUUUGCU	chr2:10927430-10927665(-)$1	235	193	212	14.3759

#DB
((((.(........).)))	chr7:37988472-37988746(+)$1	1	48	67	13.3578
.(((((........)))))	chr4:79321867-79322105(+)$1	1	214	233	15.0013
).((((........))))(	chr6:29857238-29857482(+)$1	1	79	98	13.5645
((((((........))).)	chr6:53135348-53135607(-)$1	1	42	61	14.6417
.(((((........)))))	chr20:35832187-35832393(+)$1	1	117	136	15.9727
.(((((........)))))	chr5:133295300-133295576(-)$1	1	227	246	15.9727
((.(((........))).)	chr20:35835622-35835889(+)$1	1	113	132	13.2629
..((((........)))).	chr15:39885696-39885947(+)$1	1	45	64	14.6441
.(((((........)))))	chr1:43392665-43392884(-)$1	1	157	176	15.9727
((((((........)))))	chr12:104335118-104335331(+)$1	1	107	126	13.2757
((((((........)))))	chr2:27000916-27001157(+)$1	1	122	141	15.6881
((((((........)))))	chr14:101200387-101200607(+)$1	1	8	27	15.7879
..((((........)))).	chr11:129999841-130000062(+)$1	1	73	92	13.0439
((((((........)))))	chr12:110765515-110765762(+)$1	1	187	206	13.9971
...(((........))).)	chr16:55846831-55847055(-)$1	1	71	90	13.9616
((.(((........)))))	chr10:73590803-73591045(-)$1	1	114	133	14.6311
((((.(........)))))	chr14:93178109-93178337(-)$1	1	101	120	15.1695
(.((((........)))).	chr5:135379654-135379903(+)$1	1	115	134	14.3759
.(((((........)))))	chr12:46758077-46758285(-)$1	1	176	195	15.9727
.(((((........)))))	chr3:149093200-149093424(-)$1	1	47	66	16.0045
((((((........))).)	chr11:75282973-75283256(+)$1	1	12	31	13.8753
.(((((........)))))	chr10:74773891-74774145(-)$1	1	79	98	15.9727
.(((((........)))))	chr20:35832193-35832409(+)$1	1	111	130	16.0215
...(((........)))..	chr2:20233977-20234179(-)$1	1	47	66	14.2925
..((((........)))).	chr1:201112868-201113157(-)$1	1	143	162	14.6441
((((((........)))))	chr14:93182380-93182643(-)$1	1	60	79	15.7039
.(((((........)))))	chr16:55855231-55855453(-)$1	1	10	29	16.0045
((((((........)))))	chr19:15234111-15234356(-)$1	1	56	75	13.9971
...(((........)))..	chr16:74490446-74490674(-)$1	1	23	42	13.5818
.(((((........)))))	chr19:6686080-6686290(-)$1	1	146	165	15.9727
(..(((........)))..	chr19:6678150-6678381(-)$1	1	166	185	14.1272
...(((........))).)	chr12:57592147-57592384(+)$1	1	183	202	14.1832
..((((........)))).	chr10:101802149-101802389(-)$1	1	55	74	14.2311
..((((........)))).	chr3:127783625-127783829(+)$1	1	78	97	14.6441
((((((........)))))	chr10:7763553-7763769(+)$1	1	108	127	13.2757
)(((((........)))))	chr13:113976538-113976788(+)$1	1	69	88	15.7039
((((((........)))))	chr9:90345821-90346067(+)$1	1	79	98	13.9971
(.((((........)))))	chr12:71977748-71978018(+)$1	1	112	131	14.2433
...(((........)))..	chr2:216269179-216269388(-)$1	1	94	113	13.5818
((((((........))).)	chr10:7755086-7755299(+)$1	1	153	172	13.8753
(((.((........)).))	chr15:72637720-72637950(-)$1	1	144	163	13.4586
..((((........)))).	chrX:130411902-130412181(-)$1	1	101	120	14.6348
..((((........)))).	chr14:94845700-94845906(-)$1	1	181	200	14.6441
((((((........)))))	chr16:74490528-74490753(-)$1	1	85	104	13.2757
.(((((........)))))	chr2:21225507-21225737(-)$1	1	64	83	15.0013
((((((........)))))	chr4:41951218-41951503(+)$1	1	149	168	13.2757
((((((........)))).	chr1:19559359-19559597(-)$1	1	78	97	13.3452
.(((((........)))))	chr4:155507724-155507961(-)$1	1	126	145	15.0013
((((.(........).)))	chr20:23615792-23616032(-)$1	1	8	27	13.7333
)(((((........)))))	chr2:128873791-128874018(+)$1	1	206	225	14.8049
.(((((........)))))	chr2:97399169-97399411(-)$1	1	57	76	16.0215
((((((........)))))	chr14:74952934-74953212(-)$1	1	1	20	13.2757
..((((........)))))	chr13:24234469-24234707(+)$1	1	19	38	14.4077
((((((........)))))	chr1:92182033-92182273(-)$1	1	218	237	13.2757
.(((((........)))))	chr6:26158432-26158680(+)$1	1	143	162	16.0045
((.(((........)))..	chr13:113963880-113964116(+)$1	1	177	196	13.3094
)(((((........)))))	chrX:77112843-77113077(-)$1	1	143	162	15.7879
((((((........)))))	chr7:75610358-75610564(+)$1	1	46	65	15.6185
)(((((........)))))	chr3:49570243-49570492(+)$1	1	37	56	15.6735
((((((........)))))	chr9:123768119-123768360(-)$1	1	194	213	13.9971
((((((........)))))	chr7:75609556-75609759(+)$1	1	139	158	13.9971
)(((((........)))))	chr6:132271116-132271328(-)$1	1	189	208	15.0253
((((((........).)))	chr1:226032852-226033115(+)$1	1	154	173	15.1216
((((((........)))))	chr6:31625302-31625515(+)$1	1	173	192	15.6735
))((((........)))).	chr3:50339755-50340053(-)$1	1	129	148	13.1929
)(((((........)))))	chr1:55512094-55512306(+)$1	1	141	160	15.7879
.(((((........)))))	chrX:2853004-2853222(-)$1	1	27	46	15.9727
((((((........)).))	chr5:135390385-135390604(+)$1	1	1	20	13.6982
(((.((........)).))	chr17:6598997-6599223(-)$1	1	84	103	13.4586
((((.(........).)))	chr7:899770-900089(+)$1	1	30	49	13.8483
(.((((........)))).	chr2:10927430-10927665(-)$1	1	193	212	14.3759

#PSSM
e : 0.12	f : 0.11	[ : 0.09	d : 0.09	c : 0.08	! : 0.08	g : 0.08	" : 0.08	b : 0.07	$ : 0.05	: : 0.04	+ : 0.01	# : 0.01	C : 0.01	A : 0.01	
e : 0.46	f : 0.09	g : 0.08	! : 0.07	d : 0.05	$ : 0.05	[ : 0.04	" : 0.04	b : 0.02	c : 0.01	: : 0.01	+ : 0.01	# : 0.01	
e : 0.45	d : 0.23	f : 0.08	g : 0.08	[ : 0.04	" : 0.02	$ : 0.02	c : 0.01	# : 0.01	! : 0.01	
e : 0.40	d : 0.21	c : 0.18	f : 0.08	g : 0.08	[ : 0.02	
e : 0.38	d : 0.19	c : 0.16	f : 0.08	g : 0.07	[ : 0.05	b : 0.04	
e : 0.36	d : 0.19	c : 0.16	f : 0.08	a : 0.07	g : 0.07	b : 0.04	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.36	d : 0.19	c : 0.16	f : 0.08	a : 0.07	g : 0.07	b : 0.04	
e : 0.38	d : 0.19	c : 0.16	f : 0.08	g : 0.07	] : 0.05	b : 0.04	
e : 0.39	d : 0.21	c : 0.18	f : 0.08	g : 0.08	] : 0.04	
e : 0.45	d : 0.21	] : 0.08	f : 0.08	g : 0.08	3 : 0.02	4 : 0.02	c : 0.01	2 : 0.01	
e : 0.49	2 : 0.09	f : 0.08	g : 0.08	d : 0.05	c : 0.02	3 : 0.02	4 : 0.02	] : 0.02	b : 0.01	> : 0.01	h : 0.01	5 : 0.01	: : 0.01	

#score	1034.9293216551073
#seq	71
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF930HHV_BCLAF1_transcript_m2_run1.txt

#BEAR
eee"""bb[ddddoooooodddd]bb333ee	chr17:65118992-65119235(-)$1	243	166	197	12.7114
'ddddccc"""bboooooobb22ccc]dddd	chr13:46584426-46584743(-)$1	317	170	201	13.7697
cc[a!!cccddddoooooodddd]ccc22ac	chr2:32724960-32725212(+)$1	252	173	204	13.2461
E:eeeee"""cccooooooccc4444eeeee	chr3:121412497-121412753(-)$1	256	193	224	12.2304
c[ggggggg####ccclllccc]gggggggc	chr6:132198169-132198422(+)$1	253	171	202	11.5506
e[ccc!!iiiiiiiiillliiiiiiiii]cc	chr12:121858340-121858624(+)$1	284	125	156	11.8078
iii!!ccc[bbrrrrrrrrrbb]ccc]iiii	chr10:32310053-32310272(-)$1	219	118	149	10.4444
========a"""aooooooa333a]======	chr4:144468486-144468756(+)$1	270	54	85	16.5629
hhhhhh[ddddbboooooobb22ddddhhhh	chr17:15978751-15978977(-)$1	226	136	167	12.0956
!eeeee[ffffffooooooffffffeeeee4	chr3:15778512-15778841(-)$1	329	257	288	12.5095
""hhhhhhhh!!aooooooa22hhhhhhhh2	chr2:172336561-172336806(+)$1	245	111	142	12.2531
a!!ccc[ffffffooooooffffff]ccc22	chr1:23609290-23609636(-)$1	346	303	334	13.3439
$$$$ccc[eeeeeooooooeeeee]ccchhh	chr9:19357005-19357250(+)$1	245	162	193	11.8553
fffff[bb"""bboooooobb333bb]ffff	chr9:123796980-123797208(-)$1	228	66	97	13.6977
!!a[ggggggg[bboooooobb]ggggggga	chr9:91972901-91973115(+)$1	214	10	41	13.9871
d[eeeee"""cccooooooccc333eeeee2	chr9:116997787-116998024(+)$1	237	64	95	14.7018
c[===========oooooo===========]	chrX:16887098-16887373(-)$1	275	171	202	16.7988
====####bb[cccnnnnnccc]bb======	chr2:230656656-230656881(-)$1	225	171	202	11.3163
[ggggggg!!cccooooooccc]gggggggb	chr1:98039260-98039542(-)$1	282	75	106	16.1906
##ddddccc[cccooooooccc]ccc]dddd	chr17:35605453-35605699(-)$1	246	32	63	14.9416
iiiiiiiii[cccooooooccc22iiiiiii	chr6:76388427-76388657(+)$1	230	183	214	16.5635
dddd[eeeee[bboooooobb22eeeee]dd	chr3:184105141-184105365(+)$1	224	178	209	12.8082
ddd==========oooooo==========33	chr12:123026560-123026774(+)$1	214	159	190	16.2168
=============qqqqqqqq==========	chr7:91715614-91715829(+)$1	215	177	208	10.4397
ccc!!iiiiiiiiinnnnniiiiiiiii22c	chr2:171862534-171862824(-)$1	290	76	107	11.7623
##ccc[dddd[bboooooobb22dddd]ccc	chrX:53616534-53616807(-)$1	273	173	204	13.8381
"ccc[dddd[cccooooooccc]dddd]ccc	chr5:72144150-72144421(+)$1	271	96	127	14.6085
cc!!cccffffffooooooffffff333ccc	chr20:29631445-29631675(+)$1	230	159	190	13.7351
ggggg[gggggggooooooggggggg]gggg	chrX:130959212-130959480(-)$1	268	112	143	15.5016
ggggggg"""cccnnnnnccc333ggggggg	chr18:9221775-9222053(+)$1	278	146	177	12.1756
[a####gggggggooooooggggggg22a]a	chr3:121547607-121547888(-)$1	281	170	201	14.8840
===========[aooooooa]==========	chr12:112669397-112669617(-)$1	220	48	79	16.5098
[bb[dddd!!cccoooooocccdddd]bbdd	chr13:32752213-32752513(+)$1	300	113	144	13.1930
eeeee[gggggggooooooggggggg333ee	chr3:37116397-37116704(-)$1	307	64	95	14.8789
hhhhhhhh!!cccooooooccc22hhhhhhh	chr9:135221555-135221871(-)$1	316	199	230	13.6184
eeee"""bb[cccooooooccc22bb]eeee	chr7:91632296-91632540(+)$1	244	129	160	14.2579
dddd[ccceeeeeooooooeeeee4444ccc	chr2:32692889-32693115(+)$1	226	190	221	12.4245
eeeee!!ddddbboooooobb]dddd22eee	chr15:42002909-42003136(+)$1	227	7	38	12.7124
h!!cccgggggggooooooggggggg333cc	chr2:32668533-32668747(+)$1	214	153	184	15.3639
:dddd[bb!!cccooooooccc22bb22ddd	chr11:122928452-122928690(-)$1	238	83	114	13.0194
gggggg####cccooooooccc]ggggggg:	chr20:40118515-40118760(-)$1	245	124	155	15.0145
a!!a!!ccc!!bboooooobb]ccc22a22a	chr1:39759150-39759392(+)$1	242	74	105	14.8440
ffddddccc[cccooooooccc]ccc]dddd	chr12:30818052-30818288(-)$1	236	78	109	14.4673
+==========ccclllccc]==========	chr6:96999675-96999900(+)$1	225	138	169	11.5471
"""ccc[ffffffooooooffffff]ccc22	chr6:64420968-64421200(+)$1	232	94	125	13.2843
fffffccc[ddddooooooddddccc]ffff	chr11:93467695-93467924(-)$1	229	151	182	12.2036
eedddd[bb!!bboooooobb22bbdddd22	chr16:2812628-2812873(+)$1	245	4	35	12.6849
e[a!!dddd!!bboooooobbdddd]a]eee	chr1:39723585-39723800(+)$1	215	60	91	13.6724
[ffffff!!a[bboooooobbaffffff]ee	chr7:131130496-131130763(+)$1	267	213	244	13.1439
ccc[==========nnnnn==========33	chr2:86354231-86354508(+)$1	277	15	46	12.8640
g!!iiiiiiiii[ccclllccc]iiiiiiii	chr7:94157399-94157624(+)$1	225	157	188	12.3012
[ccc!!ccc[a[cccmmmmccc]a]ccc]cc	chr5:74135796-74136095(-)$1	299	143	174	10.8179
!!ccc[gggggggoooooogggggggccc]g	chr8:80915102-80915396(-)$1	294	238	269	15.3415

#otherMatches

#Seq PSSM
AAUACUUUCUAUUGAAUCAAGUAAAAUAGGU	chr17:65118992-65119235(-)$1	243	166	197	12.7114
CGAAGCGAAAAUCAAGCCCGAAGUCGUCUUC	chr13:46584426-46584743(-)$1	317	170	201	13.7697
GCUCUGGGCCUGUGUAAUAGCAGUGCCAUGG	chr2:32724960-32725212(+)$1	252	173	204	13.2461
CCAGAGGUAACUUCAAGCAAAGAAAGUCUCU	chr3:121412497-121412753(-)$1	256	193	224	12.2304
UGAUAGCACCCUCUGCAUAGCAUGUGCUGUA	chr6:132198169-132198422(+)$1	253	171	202	11.5506
GCUGAAGGAAAUUCUGGCUCGGAAUUUUGUC	chr12:121858340-121858624(+)$1	284	125	156	11.8078
GGCAAGUUUGAUGUCACAUUUCUAACAGCUU	chr10:32310053-32310272(-)$1	219	118	149	10.4444
UGUUUUGGGAAAGGUGCAACGAGCUCCAGGA	chr4:144468486-144468756(+)$1	270	54	85	16.5629
AUUGUAUGUAUGCACCAAAGCCAGUAUUACA	chr17:15978751-15978977(-)$1	226	136	167	12.0956
GGGAGGACUGCAUUACAUCAUGCAGCUUUCA	chr3:15778512-15778841(-)$1	329	257	288	12.5095
AAGCAUUCCACUAGUGGAGUCAUGGGAUGUG	chr2:172336561-172336806(+)$1	245	111	142	12.2531
GUUGUUUCCUAUUAGUAAAGAUGGGCAGCUU	chr1:23609290-23609636(-)$1	346	303	334	13.3439
GAGACCUCUUUAUGUAGUAAUAAAUGGGGUA	chr9:19357005-19357250(+)$1	245	162	193	11.8553
GAAGAAAUUGAUCAUAUUGGAAUUAUCUCUU	chr9:123796980-123797208(-)$1	228	66	97	13.6977
AGGAUCAGUUCCACAAGAUGGUUGAGCUGAC	chr9:91972901-91973115(+)$1	214	10	41	13.9871
UAACCUUCUUUGCUGGUGUGUACUUAGGGUG	chr9:116997787-116998024(+)$1	237	64	95	14.7018
CUAAGUAAGGGUUUCUGGCAACUUUUAUUUU	chrX:16887098-16887373(-)$1	275	171	202	16.7988
GUAUAACAUGACUGUGUAUCAGGCAGUACGG	chr2:230656656-230656881(-)$1	225	171	202	11.3163
UAUAGUAAAAGGUGGGAGAAUUGUUGCUAUG	chr1:98039260-98039542(-)$1	282	75	106	16.1906
aauaaUGUUUUAGAUUCUCUUAUAACUGUUA	chr17:35605453-35605699(-)$1	246	32	63	14.9416
UUUAAAUGAUGUUAUUAUAGACUUUUAUUUG	chr6:76388427-76388657(+)$1	230	183	214	16.5635
GGGAGGGGCUGCCAGGUGAGGAAGGCCCGUC	chr3:184105141-184105365(+)$1	224	178	209	12.8082
ACUAGUUUUAUUAAUGUAAUAGUAAAAUUUU	chr12:123026560-123026774(+)$1	214	159	190	16.2168
AGAGUCUUAAUUUAAGUAUGAAGGUUAAGAU	chr7:91715614-91715829(+)$1	215	177	208	10.4397
AUCACUGAUUUUGGUCUGUCCAAGAUUAUGG	chr2:171862534-171862824(-)$1	290	76	107	11.7623
CAGGCUGCUUCCACCUUCUUGAUGAGCUGCC	chrX:53616534-53616807(-)$1	273	173	204	13.8381
GCAAGGGCUUCAGCAAAUCCUGCAGCUGUUG	chr5:72144150-72144421(+)$1	271	96	127	14.6085
UAAAACAAUGUGAAAUCAAUUAUGUGUAUGU	chr20:29631445-29631675(+)$1	230	159	190	13.7351
UCACGACAUAUGAUGAGACUUAUGUGAUGUG	chrX:130959212-130959480(-)$1	268	112	143	15.5016
GUAGCAGAAACAGAGGAGUUGGAGUUGCUAC	chr18:9221775-9222053(+)$1	278	146	177	12.1756
GAAGUUAAAAGGUAAGAAAAUCUUUUUGUGA	chr3:121547607-121547888(-)$1	281	170	201	14.8840
UGCUGGGAAGACUGAAAUGAAUCUUCUCAGC	chr12:112669397-112669617(-)$1	220	48	79	16.5098
UCACCCACAAUGUGGAUCUGCAGUGGUUGGU	chr13:32752213-32752513(+)$1	300	113	144	13.1930
CCUGUGUAAAUGAUAUUAUUUGUUUAAUAAC	chr3:37116397-37116704(-)$1	307	64	95	14.8789
UACUUGCUUCUACAUGAACGUGUUAGUGAGU	chr9:135221555-135221871(-)$1	316	199	230	13.6184
UAAGCAAGAACAGUUGAUUUUGGAUCACUUA	chr7:91632296-91632540(+)$1	244	129	160	14.2579
UGCAUGAUCCUCUAAAGGGAGAGGGAGAAUC	chr2:32692889-32693115(+)$1	226	190	221	12.4245
UCGUUCUGCUUUCUGUAGUGAUAAGCUAGAU	chr15:42002909-42003136(+)$1	227	7	38	12.7124
UAUAGUCAUAUGGAACAUCUCAUAUGUAUAC	chr2:32668533-32668747(+)$1	214	153	184	15.3639
UGAACAUCAACAGAAAGAGCUGGAGAAAGUU	chr11:122928452-122928690(-)$1	238	83	114	13.0194
AUGGGCCUAGGGAAAACCAUCCAGUCCAUCA	chr20:40118515-40118760(-)$1	245	124	155	15.0145
GGAGGAACUAGCAUAUGACUGGAGUGACAAC	chr1:39759150-39759392(+)$1	242	74	105	14.8440
CUACAAAAUCAUGUAUUUCCAUUAUUAUUGU	chr12:30818052-30818288(-)$1	236	78	109	14.4673
AUCUAUAUUUGGAAAUGUUCUUAAAUGUGGA	chr6:96999675-96999900(+)$1	225	138	169	11.5471
GAAAUUUGUGUGGUUCGCUUCACACCAGUAA	chr6:64420968-64421200(+)$1	232	94	125	13.2843
UUUUCACAUCAUAUUUGUUUAUGUGUAGGAA	chr11:93467695-93467924(-)$1	229	151	182	12.2036
UCCCGCAGUAGAAGCUUAGUUAGACGUGGAA	chr16:2812628-2812873(+)$1	245	4	35	12.6849
UGGCAACCCCAAGUUGACCCUGGGUCUGAUC	chr1:39723585-39723800(+)$1	215	60	91	13.6724
UAGAAAACUGCAGUUCAUUCUCUUUUCUUUC	chr7:131130496-131130763(+)$1	267	213	244	13.1439
AGGCAUGAAAGAUACUUCUUGUUUUUUAUUC	chr2:86354231-86354508(+)$1	277	15	46	12.8640
ACUGAGGUCUGUAUUUAAAAAACAUAGGCuu	chr7:94157399-94157624(+)$1	225	157	188	12.3012
GAGAUCAGACCCAGAAAAUUCUUGCUCUCUU	chr5:74135796-74136095(-)$1	299	143	174	10.8179
AGGUGAUUUUUUGAAAAGACAGAAAACAUAU	chr8:80915102-80915396(-)$1	294	238	269	15.3415

#DB
(((...((.((((......)))).))...))	chr17:65118992-65119235(-)$1	1	166	197	12.7114
.(((((((...((......))..))).))))	chr13:46584426-46584743(-)$1	1	170	201	13.7697
((.(..(((((((......)))).)))..))	chr2:32724960-32725212(+)$1	1	173	204	13.2461
).(((((...(((......)))....)))))	chr3:121412497-121412753(-)$1	1	193	224	12.2304
(.(((((((....(((...))).))))))))	chr6:132198169-132198422(+)$1	1	171	202	11.5506
(.(((..(((((((((...))))))))).))	chr12:121858340-121858624(+)$1	1	125	156	11.8078
(((..(((.((.........)).))).))))	chr10:32310053-32310272(-)$1	1	118	149	10.4444
(((((((((...(......)...).))))))	chr4:144468486-144468756(+)$1	1	54	85	16.5629
((((((.((((((......))..))))))))	chr17:15978751-15978977(-)$1	1	136	167	12.0956
.(((((.((((((......))))))))))).	chr3:15778512-15778841(-)$1	1	257	288	12.5095
..((((((((..(......)..)))))))).	chr2:172336561-172336806(+)$1	1	111	142	12.2531
(..(((.((((((......)))))).)))..	chr1:23609290-23609636(-)$1	1	303	334	13.3439
....(((.(((((......))))).))))))	chr9:19357005-19357250(+)$1	1	162	193	11.8553
(((((.((...((......))...)).))))	chr9:123796980-123797208(-)$1	1	66	97	13.6977
..(.(((((((.((......)).))))))))	chr9:91972901-91973115(+)$1	1	10	41	13.9871
(.(((((...(((......)))...))))).	chr9:116997787-116998024(+)$1	1	64	95	14.7018
(.(((((((((((......))))))))))).	chrX:16887098-16887373(-)$1	1	171	202	16.7988
((((....((.(((.....))).))))))))	chr2:230656656-230656881(-)$1	1	171	202	11.3163
.(((((((..(((......))).))))))))	chr1:98039260-98039542(-)$1	1	75	106	16.1906
..(((((((.(((......))).))).))))	chr17:35605453-35605699(-)$1	1	32	63	14.9416
(((((((((.(((......)))..)))))))	chr6:76388427-76388657(+)$1	1	183	214	16.5635
((((.(((((.((......))..))))).))	chr3:184105141-184105365(+)$1	1	178	209	12.8082
(((((((((((((......))))))))))..	chr12:123026560-123026774(+)$1	1	159	190	16.2168
(((((((((((((........))))))))))	chr7:91715614-91715829(+)$1	1	177	208	10.4397
(((..(((((((((.....)))))))))..)	chr2:171862534-171862824(-)$1	1	76	107	11.7623
..(((.((((.((......))..)))).)))	chrX:53616534-53616807(-)$1	1	173	204	13.8381
.(((.((((.(((......))).)))).)))	chr5:72144150-72144421(+)$1	1	96	127	14.6085
((..(((((((((......))))))...)))	chr20:29631445-29631675(+)$1	1	159	190	13.7351
(((((.(((((((......))))))).))))	chrX:130959212-130959480(-)$1	1	112	143	15.5016
(((((((...(((.....)))...)))))))	chr18:9221775-9222053(+)$1	1	146	177	12.1756
.(....(((((((......)))))))..).)	chr3:121547607-121547888(-)$1	1	170	201	14.8840
(((((((((((.(......).))))))))))	chr12:112669397-112669617(-)$1	1	48	79	16.5098
.((.((((..(((......))))))).))))	chr13:32752213-32752513(+)$1	1	113	144	13.1930
(((((.(((((((......)))))))...))	chr3:37116397-37116704(-)$1	1	64	95	14.8789
((((((((..(((......)))..)))))))	chr9:135221555-135221871(-)$1	1	199	230	13.6184
((((...((.(((......)))..)).))))	chr7:91632296-91632540(+)$1	1	129	160	14.2579
((((.((((((((......)))))....)))	chr2:32692889-32693115(+)$1	1	190	221	12.4245
(((((..((((((......)).))))..)))	chr15:42002909-42003136(+)$1	1	7	38	12.7124
(..((((((((((......)))))))...))	chr2:32668533-32668747(+)$1	1	153	184	15.3639
.((((.((..(((......)))..))..)))	chr11:122928452-122928690(-)$1	1	83	114	13.0194
((((((....(((......))).))))))).	chr20:40118515-40118760(-)$1	1	124	155	15.0145
(..(..(((..((......)).)))..)..)	chr1:39759150-39759392(+)$1	1	74	105	14.8440
))(((((((.(((......))).))).))))	chr12:30818052-30818288(-)$1	1	78	109	14.4673
.(((((((((((((...))).))))))))))	chr6:96999675-96999900(+)$1	1	138	169	11.5471
...(((.((((((......)))))).)))..	chr6:64420968-64421200(+)$1	1	94	125	13.2843
((((((((.((((......))))))).))))	chr11:93467695-93467924(-)$1	1	151	182	12.2036
((((((.((..((......))..))))))..	chr16:2812628-2812873(+)$1	1	4	35	12.6849
(.(..((((..((......)))))).).)))	chr1:39723585-39723800(+)$1	1	60	91	13.6724
.((((((..(.((......))))))))).))	chr7:131130496-131130763(+)$1	1	213	244	13.1439
(((.((((((((((.....))))))))))..	chr2:86354231-86354508(+)$1	1	15	46	12.8640
(..(((((((((.(((...))).))))))))	chr7:94157399-94157624(+)$1	1	157	188	12.3012
.(((..(((.(.(((....))).).))).))	chr5:74135796-74136095(-)$1	1	143	174	10.8179
..(((.(((((((......)))))))))).)	chr8:80915102-80915396(-)$1	1	238	269	15.3415

#PSSM
e : 0.13	c : 0.11	[ : 0.09	= : 0.07	d : 0.07	g : 0.07	h : 0.05	! : 0.05	" : 0.05	f : 0.05	i : 0.03	a : 0.03	# : 0.03	' : 0.01	E : 0.01	$ : 0.01	: : 0.01	+ : 0.01	
e : 0.11	c : 0.11	! : 0.11	d : 0.09	[ : 0.09	= : 0.09	f : 0.07	g : 0.07	i : 0.03	h : 0.03	" : 0.03	# : 0.03	: : 0.01	$ : 0.01	a : 0.01	b : 0.01	
d : 0.15	e : 0.13	c : 0.13	= : 0.11	g : 0.09	! : 0.09	h : 0.05	f : 0.05	i : 0.03	a : 0.03	[ : 0.01	$ : 0.01	# : 0.01	b : 0.01	" : 0.01	
c : 0.15	d : 0.13	= : 0.13	e : 0.11	g : 0.09	! : 0.07	h : 0.05	f : 0.05	[ : 0.05	a : 0.03	i : 0.03	" : 0.01	$ : 0.01	# : 0.01	
c : 0.15	= : 0.13	d : 0.11	! : 0.11	g : 0.11	e : 0.09	h : 0.05	f : 0.05	[ : 0.05	" : 0.03	# : 0.03	i : 0.03	
c : 0.16	= : 0.13	[ : 0.11	d : 0.11	! : 0.09	g : 0.09	e : 0.07	h : 0.05	i : 0.05	" : 0.03	# : 0.03	f : 0.01	
c : 0.20	g : 0.16	= : 0.13	[ : 0.09	d : 0.07	b : 0.05	e : 0.05	i : 0.05	! : 0.03	h : 0.03	# : 0.03	" : 0.01	f : 0.01	
c : 0.16	g : 0.15	= : 0.13	d : 0.11	b : 0.09	i : 0.07	f : 0.07	" : 0.05	h : 0.03	# : 0.03	[ : 0.01	e : 0.01	! : 0.01	
g : 0.13	= : 0.11	" : 0.09	c : 0.09	d : 0.09	! : 0.09	i : 0.07	f : 0.07	[ : 0.05	e : 0.05	b : 0.05	a : 0.01	h : 0.01	# : 0.01	
! : 0.13	d : 0.11	" : 0.11	g : 0.11	= : 0.11	[ : 0.11	f : 0.07	i : 0.05	e : 0.05	# : 0.03	b : 0.03	h : 0.01	a : 0.01	
c : 0.24	g : 0.11	= : 0.11	d : 0.09	f : 0.07	! : 0.07	[ : 0.07	" : 0.05	i : 0.05	e : 0.03	# : 0.01	b : 0.01	a : 0.01	
c : 0.28	b : 0.18	g : 0.09	f : 0.07	= : 0.07	d : 0.05	i : 0.05	[ : 0.05	e : 0.03	# : 0.01	r : 0.01	" : 0.01	! : 0.01	
c : 0.30	b : 0.20	g : 0.09	f : 0.07	= : 0.07	d : 0.05	a : 0.05	i : 0.03	e : 0.03	# : 0.01	r : 0.01	[ : 0.01	
o : 0.77	c : 0.09	i : 0.03	r : 0.01	b : 0.01	q : 0.01	n : 0.01	= : 0.01	
o : 0.79	n : 0.07	c : 0.05	i : 0.01	r : 0.01	q : 0.01	l : 0.01	
o : 0.79	n : 0.07	c : 0.03	i : 0.01	r : 0.01	q : 0.01	l : 0.01	m : 0.01	
o : 0.79	l : 0.07	n : 0.07	r : 0.01	q : 0.01	m : 0.01	
o : 0.79	n : 0.07	l : 0.05	r : 0.01	q : 0.01	c : 0.01	m : 0.01	
o : 0.79	l : 0.05	n : 0.05	c : 0.03	r : 0.01	q : 0.01	m : 0.01	
c : 0.33	b : 0.18	g : 0.09	f : 0.07	d : 0.05	a : 0.05	= : 0.05	i : 0.03	e : 0.03	r : 0.01	o : 0.01	q : 0.01	
c : 0.32	b : 0.22	g : 0.09	f : 0.07	d : 0.05	= : 0.05	i : 0.03	e : 0.03	] : 0.03	3 : 0.01	2 : 0.01	q : 0.01	
c : 0.30	2 : 0.11	= : 0.11	g : 0.09	d : 0.07	f : 0.07	3 : 0.05	i : 0.03	b : 0.03	e : 0.03	] : 0.03	a : 0.01	
] : 0.20	2 : 0.16	d : 0.11	= : 0.11	f : 0.09	g : 0.09	3 : 0.07	i : 0.03	e : 0.03	4 : 0.01	h : 0.01	c : 0.01	
g : 0.16	c : 0.11	d : 0.11	= : 0.11	f : 0.09	2 : 0.07	i : 0.05	e : 0.05	3 : 0.05	] : 0.03	a : 0.03	b : 0.03	4 : 0.01	h : 0.01	
g : 0.18	c : 0.13	b : 0.11	d : 0.11	= : 0.11	f : 0.09	i : 0.07	] : 0.05	4 : 0.03	h : 0.03	3 : 0.01	e : 0.01	
g : 0.18	c : 0.15	= : 0.15	d : 0.11	b : 0.07	i : 0.07	e : 0.05	] : 0.05	4 : 0.03	h : 0.03	3 : 0.01	2 : 0.01	f : 0.01	
] : 0.16	= : 0.15	c : 0.11	g : 0.09	3 : 0.07	e : 0.07	i : 0.07	d : 0.07	2 : 0.07	h : 0.03	4 : 0.01	a : 0.01	f : 0.01	
= : 0.15	g : 0.11	e : 0.09	i : 0.09	c : 0.09	3 : 0.07	d : 0.07	2 : 0.07	h : 0.05	f : 0.05	] : 0.05	b : 0.01	4 : 0.01	a : 0.01	
= : 0.15	c : 0.13	e : 0.11	g : 0.11	d : 0.09	] : 0.07	h : 0.07	3 : 0.05	2 : 0.05	i : 0.05	f : 0.03	a : 0.01	b : 0.01	
e : 0.16	c : 0.13	d : 0.11	g : 0.11	= : 0.11	2 : 0.09	h : 0.07	i : 0.05	f : 0.03	3 : 0.03	] : 0.03	a : 0.01	
c : 0.18	e : 0.13	d : 0.11	= : 0.09	2 : 0.09	i : 0.05	h : 0.05	a : 0.05	g : 0.05	f : 0.03	3 : 0.03	4 : 0.01	] : 0.01	b : 0.01	: : 0.01	

#score	716.715901418898
#seq	53
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF130JJX_EIF3D_transcript_m2_run1.txt

#BEAR
ccc[bb[bbddddmmmmdddd]bb22bb]cc	chr12:62860550-62860816(+)$1	266	142	173	11.5456
#eeeeeddddcccmmmmccc]dddd]eeeee	chr6:56340880-56341168(-)$1	288	55	86	11.3819
e[bbccc!!ddddmmmmdddd4444ccc]bb	chr19:1944580-1944813(+)$1	233	45	76	13.6575
!!ffffff[ddddmmmmddddffffff333e	chr13:113986746-113987031(-)$1	285	63	94	13.0847
bb[eeeee!!cccmmmmccc4444eeeee]b	chr1:154574922-154575177(-)$1	255	168	199	12.4732
eee####bbddddmmmmdddd]bbeeeee33	chr15:69111520-69111790(-)$1	270	176	207	13.4321
ee"""eeeeecccmmmmccc333eeeeeeee	chr1:55604179-55604425(-)$1	246	196	227	12.4457
cc!!dddd[ddddmmmmdddd]dddd333cc	chr1:234565815-234566129(-)$1	314	133	164	14.0513
[eeeeecccddddmmmmdddd22ccc]eeee	chr19:23507365-23507656(-)$1	291	184	215	14.9943
cc!!eeeeeddddmmmmdddd333eeeee22	chr19:55628512-55628809(-)$1	297	108	139	14.8703
###ffffff[ddddllldddd333ffffff6	chr6:170706852-170707136(+)$1	284	180	211	11.4784
:eeeee"""ddddmmmmddddeeeee::ddd	chr22:48982545-48982777(+)$1	232	4	35	11.4128
eeeecccccccccmmmmccc]ccc]ccc]ee	chr17:31258243-31258526(+)$1	283	96	127	11.2965
[ccc[ccceeeeemmmmeeeee]ccc]ccc2	chr17:77955476-77955754(-)$1	278	134	165	10.7839
ff[ffffff[ddddllldddd333ffffff]	chr21:46847063-46847331(+)$1	268	21	52	11.9818
d[dddd!!eeeeemmmmeeeee]dddd333d	chr20:37128041-37128337(+)$1	296	199	230	10.9816
!!eeeee!!ddddmmmmdddd4444eeeee2	chr3:184045561-184045873(+)$1	312	273	304	15.6809
hheeeee!!ddddmmmmddddeeeee>>>>>	chr9:79917736-79917993(+)$1	257	140	171	12.7641
iiiiii"""ddddmmmmddddiiiiiiiii]	chr22:48984299-48984562(+)$1	263	195	226	14.1777
=ccc"""cccddddllldddd]ccc333ccc	chr19:23507108-23507415(-)$1	307	94	125	12.2900
!!ccc"""ddddnnnnndddd333ccc22cc	chr12:62929290-62929591(+)$1	301	120	151	11.7128
gadddd"""ddddmmmmdddd22dddd]a22	chr16:69601034-69601318(+)$1	284	134	165	14.1623
''dddd"""ddddmmmmdddd]dddd=====	chr13:113982076-113982341(-)$1	265	81	112	13.1520
iii[dddd!!cccmmmmccc22dddd333ii	chr2:134877571-134877838(+)$1	267	125	156	11.9777
deeeee"""ddddmmmmdddd333eeeee]d	chr4:79236742-79236977(+)$1	235	189	220	16.1573
bb!!ccc[eeeeemmmmeeeee22ccc333b	chr14:23564651-23564953(+)$1	302	117	148	10.6597
b[eeeee!!ddddlllddddeeeeebbffff	chr16:8961282-8961554(-)$1	272	142	173	11.3591
eeea[ccc!!ddddllldddd22ccc]a22e	chr15:25322015-25322239(+)$1	224	157	188	12.8938
ffff[a[bb[cccmmmmccc22bb]a]ffff	chr12:123998097-123998362(-)$1	265	12	43	10.4027
[a[eeeee[ddddmmmmdddd22eeeee]a]	chr20:46264535-46264772(+)$1	237	184	215	14.9790
ggggg$$$$$cccmmmmccc4444ggggggg	chr2:32832475-32832712(+)$1	237	199	230	11.8314
ccc[dddd[ddddmmmmdddd]dddd]ccc:	chr2:63821519-63821775(+)$1	256	148	179	12.6574
ff[ccc####ccclllccc4444ccc]ffff	chr16:2140337-2140594(-)$1	257	70	101	10.8590
%dddd[ccc[cccmmmmccc333ccc]dddd	chr12:116406666-116406965(-)$1	299	168	199	11.2170
c!!eeeee[ddddllldddd]eeeee4444c	chr19:10464509-10464769(-)$1	260	218	249	12.2805
""a[ffffffddddllldddd333ffffff]	chr15:28424064-28424276(-)$1	212	86	117	11.9463
[eeeeebb[ddddmmmmddddbb4444eeee	chr7:156931546-156931873(+)$1	327	198	229	13.7222
ee[dddd[ddddooooooddddddddeeeee	chr12:112654610-112654826(-)$1	216	173	204	10.3924
eeeee!!a[ddddmmmmdddd]a22eeeeee	chr22:35738302-35738605(+)$1	303	127	158	14.9040
[eeeee[ccc!!ccclllccc22ccceeeee	chr19:4037218-4037475(+)$1	257	190	221	9.6057
:eeeee"""ddddmmmmdddd333eeeeeii	chr21:38507602-38507882(+)$1	280	113	144	15.4115
gg!!ccc[eeeeemmmmeeeeeccc]ggggg	chr9:137256015-137256281(+)$1	266	142	173	11.0227
gggggggeeeeeammmma]eeeee]gggggg	chr9:91926079-91926332(+)$1	253	13	44	10.0417
c[eeeee!!ddddmmmmdddd]eeeee]ccc	chr14:102471300-102471533(+)$1	233	144	175	14.7288
ffffff"""ddddlllddddffffffeeeee	chr15:25320817-25321116(+)$1	299	125	156	11.3739
eccc[bbcccddddllldddd]ccc]bb]cc	chr12:49421497-49421747(-)$1	250	142	173	10.8950
dddddddd[ddddmmmmdddd333ddddeee	chr15:28356966-28357212(-)$1	246	96	127	14.1785
ddd[bb"""ddddmmmmdddd333bb]dddd	chr4:79176371-79176620(+)$1	249	97	128	13.8221
c!!eeeee[ddddlllddddeeeee22ccch	chr11:72408269-72408535(-)$1	266	39	70	11.5851
eeee[a[ddddoooooodddd333a]eeeee	chr17:167116-167431(-)$1	315	68	99	12.4305
eeee!!bb!!cccmmmmccc22bb333eeee	chr2:32664576-32664781(+)$1	205	26	57	12.0530
fggggggga[ccclllccc]a]ggggggg]f	chr21:46858228-46858462(+)$1	234	95	126	9.5762
eeee!!bb!!cccmmmmccc22bb22eeeee	chr16:87878049-87878256(-)$1	207	24	55	11.5164

#otherMatches

#Seq PSSM
GGCUGGGCCCCGCGGCAGCGGAGGGACCUGC	chr12:62860550-62860816(+)$1	266	142	173	11.5456
AUCAGCAGAGAUUAGCAAGUGCUCUGGCUGG	chr6:56340880-56341168(-)$1	288	55	86	11.3819
CUGUGACUGGCACGUGGGUGCAGCCGUCUGC	chr19:1944580-1944813(+)$1	233	45	76	13.6575
UCGGGAUGUGUUUGUGGGAACUGUCCUUACG	chr13:113986746-113987031(-)$1	285	63	94	13.0847
AGUAGUUUCCUGCUUAAGCAAAUAGAAUUUC	chr1:154574922-154575177(-)$1	255	168	199	12.4732
CCCUCUUGGCCCCUUGGGGGGACCGGGGACG	chr15:69111520-69111790(-)$1	270	176	207	13.4321
AUAAAGCAGUCUUGAUUGAGUUAGCUGCAUG	chr1:55604179-55604425(-)$1	246	196	227	12.4457
GCCAUGGUGUGUGAGGCCAUAGACCAGAAGC	chr1:234565815-234566129(-)$1	314	133	164	14.0513
acagugagucauaaucuugugccacugcacu	chr19:23507365-23507656(-)$1	291	184	215	14.9943
CUgcgcgccgccgacccuggccccggcgccg	chr19:55628512-55628809(-)$1	297	108	139	14.8703
CGUGGUAAGAAAGGAGACCUUCUGCUUACCC	chr6:170706852-170707136(+)$1	284	180	211	11.4784
AGUGCAGUCUGGAAUCUUCCAUGCACAGUUG	chr22:48982545-48982777(+)$1	232	4	35	11.4128
UUCAGGCCCUCAGGUCUCUGCAGGUGUCGUG	chr17:31258243-31258526(+)$1	283	96	127	11.2965
UGCAGGGACGGAUGUGGGUCUGCUUCGUGCC	chr17:77955476-77955754(-)$1	278	134	165	10.7839
GCUGGGGGCUGGGCCCAGCUUUCUGUUCUCC	chr21:46847063-46847331(+)$1	268	21	52	11.9818
GCAGUGGAGCAAGGUCAUUUGUGCACUCACU	chr20:37128041-37128337(+)$1	296	199	230	10.9816
UUUUCUAUCUCCUUUUUGGGACCCUUGGAAC	chr3:184045561-184045873(+)$1	312	273	304	15.6809
CUGCCAUUAAAUCUUGAGGUUGUGGUUGAAC	chr9:79917736-79917993(+)$1	257	140	171	12.7641
UGCCUCUGUGGCCUCCCGGUUGGGGCAGGGC	chr22:48984299-48984562(+)$1	263	195	226	14.1777
uaCUUGGCCGCCUGAGUUAGGCCGGAUUAGU	chr19:23507108-23507415(-)$1	307	94	125	12.2900
AUAUGCAAAGGUUCCCUGCCUCCCCAUUAUG	chr12:62929290-62929591(+)$1	301	120	151	11.7128
UCCCAGCAUCUGAAAUAUUAGCACUGGAGCU	chr16:69601034-69601318(+)$1	284	134	165	14.1623
UUCAGCGCCUCUAUUUUUGGAAGCUGUUCUA	chr13:113982076-113982341(-)$1	265	81	112	13.1520
cggcccgcucggcggcggcccugcggcuccc	chr2:134877571-134877838(+)$1	267	125	156	11.9777
ACAUGUUUGACUAUACUUGGUGUUAUAUGUU	chr4:79236742-79236977(+)$1	235	189	220	16.1573
AGUAGUUGGAGUCUAAGGACUCGUGACAAUC	chr14:23564651-23564953(+)$1	302	117	148	10.6597
GUCUUUGUUCCACCGAGUGGCAAAGCCAGCG	chr16:8961282-8961554(-)$1	272	142	173	11.3591
AUUUGCAGAAACAAAGAUUGUGCCUGGAUCA	chr15:25322015-25322239(+)$1	224	157	188	12.8938
UGGGUGUGUAUGAUGGCUCACAACUCUUCCA	chr12:123998097-123998362(-)$1	265	12	43	10.4027
UGAAGGUGUGGGGACUUCCCUUUUAUCUACU	chr20:46264535-46264772(+)$1	237	184	215	14.9790
GAACAAAUCAGAAACCCUUCACCAUGUUUUA	chr2:32832475-32832712(+)$1	237	199	230	11.8314
CAUAUUCACUGCUGUACAGUAUUGGAAAUGG	chr2:63821519-63821775(+)$1	256	148	179	12.6574
CUGGGCUCUCUACCCUGUGUCCUGCCGAGUC	chr16:2140337-2140594(-)$1	257	70	101	10.8590
CCCCAGGCUCUCCUUCUGGAAUUGGUGUGGG	chr12:116406666-116406965(-)$1	299	168	199	11.2170
CCAUCUGGGGGGUGCUACCUGCUGGGGCCAG	chr19:10464509-10464769(-)$1	260	218	249	12.2805
GUCGUUCCUUGCAGUGACUGUGGAAGGGAAG	chr15:28424064-28424276(-)$1	212	86	117	11.9463
AGGCGAGGCAGGGCCGCCCCUCCAGUAUUGC	chr7:156931546-156931873(+)$1	327	198	229	13.7222
UCCUUUGGCUUCACUACAGAAGCAGAGAAGC	chr12:112654610-112654826(-)$1	216	173	204	10.3924
AGGUUGGAUAAACUGAUGUUUCUAAAACCUG	chr22:35738302-35738605(+)$1	303	127	158	14.9040
GACGAGAUCGAGUACCUGGUGGACGGCUCGU	chr19:4037218-4037475(+)$1	257	190	221	9.6057
AUUCAAGAUGGCUAUAUGGCCUUAUUGGAGC	chr21:38507602-38507882(+)$1	280	113	144	15.4115
GCACUGGUGGCUUCAGGGGGCUCCAAGCCCU	chr9:137256015-137256281(+)$1	266	142	173	11.0227
UCGUUGGGACUGCGGUCGUUAGUCUCCGGCG	chr9:91926079-91926332(+)$1	253	13	44	10.0417
AUGGGCGGAGGUGGAGAUGCCGCGCCCUUGC	chr14:102471300-102471533(+)$1	233	144	175	14.7288
UUUGGAGAUGGCAAAGUGCUUCUAAACAUGU	chr15:25320817-25321116(+)$1	299	125	156	11.3739
UCUUGAGCCUCCUGAAACAGGUAGGUCUGGG	chr12:49421497-49421747(-)$1	250	142	173	10.8950
GAAGCUGCCCAGGUAUUCCUGCAAGCAGGUG	chr15:28356966-28357212(-)$1	246	96	127	14.1785
GUGUAGAAAUGGGGUUGCCCAGUGCUUCACA	chr4:79176371-79176620(+)$1	249	97	128	13.8221
UCAUGGGUUGGCUGGGGGCCAUCCAGAAAGC	chr11:72408269-72408535(-)$1	266	39	70	11.5851
CCCUGGACUACAGGUCAGUGGAGGUGGGGGC	chr17:167116-167431(-)$1	315	68	99	12.4305
UUUUAAUCCAUGUCAAGGCAGUGAAUGAAAG	chr2:32664576-32664781(+)$1	205	26	57	12.0530
GGGCUGGGCAGGGGACCCCGGACCUGGCCUC	chr21:46858228-46858462(+)$1	234	95	126	9.5762
GGACACUGCGUUCAUGGGGAGACAUCGUCCU	chr16:87878049-87878256(-)$1	207	24	55	11.5164

#DB
(((.((.((((((....)))).))..)).))	chr12:62860550-62860816(+)$1	1	142	173	11.5456
.((((((((((((....))).)))).)))))	chr6:56340880-56341168(-)$1	1	55	86	11.3819
(.(((((..((((....))))....))).))	chr19:1944580-1944813(+)$1	1	45	76	13.6575
..((((((.((((....))))))))))...)	chr13:113986746-113987031(-)$1	1	63	94	13.0847
((.(((((..(((....)))....))))).)	chr1:154574922-154575177(-)$1	1	168	199	12.4732
(((....((((((....)))).)))))))..	chr15:69111520-69111790(-)$1	1	176	207	13.4321
((...((((((((....)))...))))))))	chr1:55604179-55604425(-)$1	1	196	227	12.4457
((..((((.((((....)))).))))...))	chr1:234565815-234566129(-)$1	1	133	164	14.0513
.((((((((((((....))))..))).))))	chr19:23507365-23507656(-)$1	1	184	215	14.9943
((..(((((((((....))))...)))))..	chr19:55628512-55628809(-)$1	1	108	139	14.8703
...((((((.((((...))))...)))))).	chr6:170706852-170707136(+)$1	1	180	211	11.4784
.(((((...((((....)))))))))..(((	chr22:48982545-48982777(+)$1	1	4	35	11.4128
(((((((((((((....))).))).))).))	chr17:31258243-31258526(+)$1	1	96	127	11.2965
.(((.((((((((....))))).))).))).	chr17:77955476-77955754(-)$1	1	134	165	10.7839
((.((((((.((((...))))...)))))).	chr21:46847063-46847331(+)$1	1	21	52	11.9818
(.((((..(((((....))))).))))...)	chr20:37128041-37128337(+)$1	1	199	230	10.9816
..(((((..((((....))))....))))).	chr3:184045561-184045873(+)$1	1	273	304	15.6809
(((((((..((((....))))))))).....	chr9:79917736-79917993(+)$1	1	140	171	12.7641
((((((...((((....))))))))))))).	chr22:48984299-48984562(+)$1	1	195	226	14.1777
)(((...(((((((...)))).)))...)))	chr19:23507108-23507415(-)$1	1	94	125	12.2900
..(((...((((.....))))...)))..))	chr12:62929290-62929591(+)$1	1	120	151	11.7128
((((((...((((....))))..)))).)..	chr16:69601034-69601318(+)$1	1	134	165	14.1623
..((((...((((....)))).)))))))))	chr13:113982076-113982341(-)$1	1	81	112	13.1520
(((.((((..(((....)))..))))...))	chr2:134877571-134877838(+)$1	1	125	156	11.9777
((((((...((((....))))...))))).)	chr4:79236742-79236977(+)$1	1	189	220	16.1573
((..(((.(((((....)))))..)))...)	chr14:23564651-23564953(+)$1	1	117	148	10.6597
(.(((((..((((...)))))))))))((((	chr16:8961282-8961554(-)$1	1	142	173	11.3591
((((.(((..((((...))))..))).)..)	chr15:25322015-25322239(+)$1	1	157	188	12.8938
((((.(.((.(((....)))..)).).))))	chr12:123998097-123998362(-)$1	1	12	43	10.4027
.(.(((((.((((....))))..))))).).	chr20:46264535-46264772(+)$1	1	184	215	14.9790
(((((.....(((....)))....)))))))	chr2:32832475-32832712(+)$1	1	199	230	11.8314
(((.((((.((((....)))).)))).))).	chr2:63821519-63821775(+)$1	1	148	179	12.6574
((.(((....(((...)))....))).))))	chr16:2140337-2140594(-)$1	1	70	101	10.8590
.((((.(((.(((....)))...))).))))	chr12:116406666-116406965(-)$1	1	168	199	11.2170
(..(((((.((((...)))).)))))....)	chr19:10464509-10464769(-)$1	1	218	249	12.2805
..(.((((((((((...))))...)))))).	chr15:28424064-28424276(-)$1	1	86	117	11.9463
.(((((((.((((....))))))....))))	chr7:156931546-156931873(+)$1	1	198	229	13.7222
((.((((.((((......)))))))))))))	chr12:112654610-112654826(-)$1	1	173	204	10.3924
(((((..(.((((....)))).)..)))))(	chr22:35738302-35738605(+)$1	1	127	158	14.9040
.(((((.(((..(((...)))..))))))))	chr19:4037218-4037475(+)$1	1	190	221	9.6057
.(((((...((((....))))...)))))((	chr21:38507602-38507882(+)$1	1	113	144	15.4115
((..(((.(((((....)))))))).)))))	chr9:137256015-137256281(+)$1	1	142	173	11.0227
(((((((((((((....).))))).))))))	chr9:91926079-91926332(+)$1	1	13	44	10.0417
(.(((((..((((....)))).))))).)))	chr14:102471300-102471533(+)$1	1	144	175	14.7288
((((((...((((...))))))))))(((((	chr15:25320817-25321116(+)$1	1	125	156	11.3739
)(((.(((((((((...)))).))).)).))	chr12:49421497-49421747(-)$1	1	142	173	10.8950
))))((((.((((....))))...))))(((	chr15:28356966-28357212(-)$1	1	96	127	14.1785
(((.((...((((....))))...)).))))	chr4:79176371-79176620(+)$1	1	97	128	13.8221
(..(((((.((((...)))))))))..))))	chr11:72408269-72408535(-)$1	1	39	70	11.5851
((((.(.((((......))))...).)))))	chr17:167116-167431(-)$1	1	68	99	12.4305
((((..((..(((....)))..))...))))	chr2:32664576-32664781(+)$1	1	26	57	12.0530
(((((((((.(((...))).).))))))).)	chr21:46858228-46858462(+)$1	1	95	126	9.5762
((((..((..(((....)))..))..)))))	chr16:87878049-87878256(-)$1	1	24	55	11.5164

#PSSM
e : 0.20	c : 0.13	[ : 0.09	f : 0.09	d : 0.07	g : 0.07	! : 0.05	b : 0.05	# : 0.03	: : 0.03	i : 0.03	h : 0.01	= : 0.01	' : 0.01	% : 0.01	" : 0.01	
e : 0.30	c : 0.13	! : 0.09	[ : 0.07	f : 0.07	g : 0.07	d : 0.05	b : 0.03	i : 0.03	a : 0.03	# : 0.01	h : 0.01	' : 0.01	" : 0.01	
e : 0.33	c : 0.11	! : 0.11	d : 0.11	[ : 0.09	f : 0.05	g : 0.05	i : 0.03	b : 0.01	" : 0.01	# : 0.01	a : 0.01	
e : 0.37	d : 0.11	[ : 0.09	f : 0.09	c : 0.09	! : 0.07	g : 0.05	b : 0.01	# : 0.01	" : 0.01	i : 0.01	a : 0.01	
e : 0.32	d : 0.16	c : 0.11	f : 0.09	[ : 0.09	g : 0.05	b : 0.03	" : 0.03	! : 0.03	# : 0.01	i : 0.01	
e : 0.32	d : 0.15	c : 0.13	f : 0.09	b : 0.05	! : 0.05	" : 0.03	a : 0.03	g : 0.03	# : 0.01	i : 0.01	$ : 0.01	[ : 0.01	
e : 0.18	" : 0.18	c : 0.15	d : 0.11	[ : 0.07	f : 0.07	b : 0.07	# : 0.03	! : 0.03	g : 0.03	$ : 0.01	
" : 0.16	c : 0.15	e : 0.13	b : 0.11	d : 0.11	! : 0.11	f : 0.07	[ : 0.05	$ : 0.01	# : 0.01	a : 0.01	g : 0.01	
! : 0.18	[ : 0.16	" : 0.15	e : 0.13	c : 0.11	d : 0.07	b : 0.05	f : 0.05	$ : 0.01	# : 0.01	a : 0.01	
d : 0.56	e : 0.11	! : 0.09	[ : 0.09	c : 0.07	$ : 0.01	# : 0.01	f : 0.01	
d : 0.66	c : 0.22	e : 0.09	! : 0.01	
d : 0.64	c : 0.22	e : 0.09	! : 0.01	o : 0.01	
d : 0.60	c : 0.24	e : 0.07	o : 0.03	n : 0.01	a : 0.01	
m : 0.69	d : 0.11	l : 0.11	o : 0.03	n : 0.01	c : 0.01	
m : 0.69	l : 0.22	o : 0.03	n : 0.01	c : 0.01	
m : 0.69	l : 0.24	o : 0.03	n : 0.01	
m : 0.69	l : 0.13	d : 0.07	c : 0.03	o : 0.03	n : 0.01	
d : 0.64	c : 0.22	e : 0.07	o : 0.01	l : 0.01	a : 0.01	
d : 0.66	c : 0.24	e : 0.07	] : 0.01	
d : 0.66	c : 0.20	e : 0.09	4 : 0.01	] : 0.01	
d : 0.58	e : 0.13	2 : 0.07	] : 0.05	4 : 0.05	3 : 0.03	c : 0.01	f : 0.01	a : 0.01	
3 : 0.22	] : 0.18	e : 0.18	2 : 0.16	4 : 0.09	d : 0.03	f : 0.03	c : 0.01	i : 0.01	b : 0.01	
3 : 0.22	e : 0.13	b : 0.11	d : 0.11	2 : 0.11	4 : 0.09	c : 0.07	f : 0.03	] : 0.03	i : 0.01	a : 0.01	g : 0.01	
c : 0.18	3 : 0.18	e : 0.16	d : 0.15	b : 0.09	4 : 0.09	f : 0.03	2 : 0.03	i : 0.01	g : 0.01	
e : 0.24	c : 0.20	d : 0.16	f : 0.09	2 : 0.05	4 : 0.05	] : 0.05	g : 0.03	i : 0.01	b : 0.01	a : 0.01	3 : 0.01	
e : 0.24	c : 0.18	d : 0.15	f : 0.09	] : 0.07	2 : 0.05	g : 0.05	3 : 0.03	b : 0.03	i : 0.01	a : 0.01	4 : 0.01	
e : 0.30	] : 0.15	c : 0.07	f : 0.07	3 : 0.07	g : 0.07	b : 0.05	d : 0.05	4 : 0.03	: : 0.01	> : 0.01	i : 0.01	= : 0.01	2 : 0.01	
e : 0.33	3 : 0.11	f : 0.11	c : 0.09	g : 0.07	d : 0.05	b : 0.03	] : 0.03	: : 0.01	> : 0.01	i : 0.01	2 : 0.01	= : 0.01	a : 0.01	4 : 0.01	
e : 0.33	f : 0.11	] : 0.09	3 : 0.09	c : 0.09	g : 0.07	d : 0.05	2 : 0.03	> : 0.01	i : 0.01	a : 0.01	= : 0.01	4 : 0.01	
e : 0.26	c : 0.16	f : 0.11	3 : 0.07	] : 0.05	2 : 0.05	d : 0.05	i : 0.05	g : 0.05	b : 0.01	> : 0.01	= : 0.01	a : 0.01	4 : 0.01	
e : 0.28	c : 0.13	d : 0.09	2 : 0.07	] : 0.07	f : 0.07	b : 0.05	g : 0.05	i : 0.03	3 : 0.01	6 : 0.01	> : 0.01	= : 0.01	: : 0.01	h : 0.01	

#score	660.2948212639091
#seq	53
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_transcript_m1_run1.txt

#BEAR
============a[ddddoooooodddd]a]========	chr2:27294368-27294575(-)$1	207	131	170	16.8575
cccaiiiiiiiii[ccc[bblllbb]ccc]iiiiiiiii	chr5:126365934-126366187(-)$1	253	169	208	14.5057
:===========!!ddddmmmmdddd]===========:	chr3:51975696-51975987(-)$1	291	138	177	12.9469
bb[cccccc[ffffff[aooooooa]ffffff]ccc]cc	chr10:97050549-97050862(-)$1	313	270	309	12.3793
======[a[bb"""ddddnnnnndddd]bb]a]======	chr10:18948319-18948713(+)$1	394	152	191	17.1728
a[ggggggg"""cccbboooooobb]ccc]ggggggg]a	chr19:13213372-13213658(-)$1	286	190	229	16.1728
==========a[a[ddddnnnnndddd]a]a]=======	chr16:57481280-57481590(+)$1	310	169	208	18.3942
========!!bb!!cccooooooccc]bb==========	chr22:21271713-21271971(+)$1	258	166	205	17.1838
!!ffffff[ffffff[bbnnnnnbb]ffffff22fffff	chr6:158589288-158589528(+)$1	240	73	112	13.2065
ff[eeeee!!ccccccbbnnnnnbb]ccc]ccc22eeee	chr10:74856446-74856719(-)$1	273	145	184	15.1413
=ccc####eeeee[bbbbnnnnnbb]bbeeeee]ccc]=	chr15:75630301-75630573(+)$1	272	145	184	14.4918
fff"""iiiiiiiiibb[annnnna]bb]iiiiiiiii3	chr20:60831012-60831321(+)$1	309	5	44	15.5853
:=========="""cccooooooccc333==========	chr8:28570876-28571168(+)$1	292	67	106	17.3464
dddd[ccc"""dddd[bbnnnnnbb]dddd333ccc]dd	chr1:87369011-87369232(-)$1	221	55	94	15.6576
f[ccc[bb[dddd[cccooooooccc]ddddbb333ccc	chr2:198364403-198364628(-)$1	225	23	62	12.5612
++ggggggg[ccc[ddddllldddd]cccgggggggfff	chr19:41859381-41859626(-)$1	245	98	137	11.8949
:==========[a!!cccnnnnnccc]a]==========	chr2:58273799-58274104(+)$1	305	192	231	18.4266
eeee!!ccc!!bb[ddddnnnnndddd]bb22ccceeee	chr1:38273657-38273942(-)$1	285	237	276	14.5572
egggggggccc!!bbcccnnnnnccc22bb22ccc]ggg	chr2:176046283-176046491(-)$1	208	153	192	15.2619
========!!ccc[cccmmmmccc22ccc]=========	chr22:37956442-37956696(+)$1	254	138	177	13.9264
#a!!dddd!!ccc[aooooooacccdddd22a333dddd	chr6:7910712-7911117(-)$1	405	291	330	11.6534
""ggggggg####eeeeennnnneeeee333ggggggg2	chr22:24951926-24952140(+)$1	214	10	49	16.1000
ddggggggg[a"""ddddnnnnndddd]a]ggggggg33	chr6:136610750-136611065(-)$1	315	164	203	16.9765
ggg[a!!ccc[dddd[bbnnnnnbb22dddd333ccc22	chr9:131266959-131267282(+)$1	323	222	261	15.4960
!!iiiiiiiii[bb!!bbnnnnnbb]bb]iiiiiiiii2	chr22:43555114-43555330(+)$1	216	139	178	17.6792
eeee!!eeeee[ccc[bbnnnnnbb22ccceeeee]eee	chr4:4288145-4288400(-)$1	255	132	171	13.7612
###ggggggg[aa[cccooooooccc]a]a]ggggggg3	chr19:58919996-58920382(+)$1	386	164	203	15.9968
cc[a!!ggggggg[bbbbnnnnnbb]bbggggggg22a]	chr1:168195153-168195438(+)$1	285	100	139	16.3674
b[a!!dddd!!bb[ddddnnnnndddd]bb]dddd22a3	chr1:149899517-149899782(-)$1	265	213	252	13.8972
=========[agggggggnnnnnggggggg]a]======	chr20:44485808-44486113(-)$1	305	98	137	17.6158
gggggg[ccc!!a[bb[bbmmmmbb]bba22ccc]gggg	chr12:110841330-110841583(-)$1	253	28	67	13.0785
!!ffffff!!dddd[a[annnnna]a]dddd4444ffff	chr20:60962338-60962544(+)$1	206	95	134	13.7788
dd[a[ccc[a[bb!!cccmmmmccc]bb]a]ccc]addd	chr16:23847281-23847552(+)$1	271	182	221	12.1504
ggg"""ccc####ddddbbmmmmbb]dddd333ccc333	chr22:42486589-42486863(-)$1	274	162	201	13.7515
cc[bb####dddd!!cccnnnnnccc22dddd333bb]c	chr3:119217318-119217700(+)$1	382	127	166	14.0065
[ccc[dddd$$$$$ddddnnnnndddddddd]ccc22cc	chr1:201120840-201121064(-)$1	224	18	57	13.9650
=========####eeeeennnnneeeee22=========	chr2:231280811-231281150(+)$1	339	206	245	17.1453
g[ccc[dddd[bb"""bbnnnnnbb333bbdddd]ccc]	chr1:182360743-182360954(-)$1	211	46	85	14.7646
bb[eeeee!!a!!bb[bboooooobbbb22a]eeeee]b	chr10:98346390-98346739(-)$1	349	223	262	11.8212
cc!!ccc[ccc"""ddddnnnnnddddccc]ccc22ccc	chr17:30771401-30771733(+)$1	332	268	307	15.8138
""dddd!!ccc"""ddddnnnnndddd4444ccc]dddd	chr19:1388731-1388985(+)$1	254	45	84	14.9982
eeeee===========[bbmmmmbb===========22e	chr8:42752170-42752428(+)$1	258	51	90	13.1107
ddd####==========oooooo==========dddd]a	chr6:8102597-8102855(-)$1	258	95	134	14.4887
ddbb[ggggggg"""cccnnnnnccc333gggggggbb]	chr18:2571181-2571589(-)$1	408	226	265	15.7579
ffffff[ggggggg!!bbnnnnnbb22ggggggg]ffff	chr17:80416514-80416757(+)$1	243	99	138	15.1676
ggg[bbccc$$$$$cccooooooccc4444ccc]bb]gg	chr11:125465675-125465920(+)$1	245	95	134	13.6734
fhhhhhhhh[agggggggnnnnnggggggg333a]hhhh	chr1:202976436-202976715(+)$1	279	102	141	13.9174
========!!iiiiiiiiiooooooiiiiiiiii=====	chr3:25831488-25831739(+)$1	251	50	89	15.5114
:ffffffa"""eeeee[annnnna]eeeee333a]ffff	chr12:42729583-42729865(+)$1	282	180	219	13.2411
iiiii!!cccccc[cccooooooccc]ccc333ccc]ii	chr10:72645570-72645787(-)$1	217	171	210	16.2002
ccc[ccc$$$$$bb[bboooooobb]bb4444ccc]ccc	chr17:72868887-72869187(-)$1	300	247	286	13.8019
ffff[dddd[ffffffbbnnnnnbb]ffffff]dddd]f	chr12:54673707-54673970(-)$1	263	72	111	13.1465
iiiiiiii!!ccc[bbbbnnnnnbb]bbccciiiiiiii	chr22:42017892-42018097(+)$1	205	91	130	18.0052

#otherMatches

#Seq PSSM
CACGGGCCAGCCCCGCCGUGGCCGUGGCCGUGGCUGGCC	chr2:27294368-27294575(-)$1	207	131	170	16.8575
GCGGCUCCUCUCGGCGCGGUUCGGCGGCGGCGAGAGGGG	chr5:126365934-126366187(-)$1	253	169	208	14.5057
AGCCGGCCUCUGGGGCCGGGGCUGGCGCGGGGGCCGGCA	chr3:51975696-51975987(-)$1	291	138	177	12.9469
UCUCGCCAUUUCCCGGGUAAGAGCAGCUGGGACGUGCGU	chr10:97050549-97050862(-)$1	313	270	309	12.3793
UUCUCCUCGGCUCCGCGCAGCCCGCGCCGCGGUGGGGGA	chr10:18948319-18948713(+)$1	394	152	191	17.1728
UGAGGCCGGACCCUCGCGAGACAGCAGAGCCUGGCCUGA	chr19:13213372-13213658(-)$1	286	190	229	16.1728
CCGGGCGGGCUGGAGGCUCCUGCAGCUGCGAUGCCUGCC	chr16:57481280-57481590(+)$1	310	169	208	18.3942
GUUCCAGGCCGGGAGUCACUGGAGGCACCCCUGGGACGC	chr22:21271713-21271971(+)$1	258	166	205	17.1838
GAUGGCGUAUCGGCGCAGGCGCACUCUGCCGGCAACGCC	chr6:158589288-158589528(+)$1	240	73	112	13.2065
GGAGGCGACUGGGGGCUGAAGAGCGCGCCGCCCUCUCGU	chr10:74856446-74856719(-)$1	273	145	184	15.1413
GGCAGAAAUCAGCACGCUGGCCAAGAUGGUUGAGUGCAC	chr15:75630301-75630573(+)$1	272	145	184	14.4918
AGAUUGAUUUUAGGAUGGUGAAUGGGUAUUUUUAAAAUG	chr20:60831012-60831321(+)$1	309	5	44	15.5853
UUUUGUUUUUUGUUUUUUUUUUUAAAUCAGGAGAGCAAG	chr8:28570876-28571168(+)$1	292	67	106	17.3464
AGUAUAAAUAUGGAAUUGUGUUUUAUUUCCCAUUUUUUA	chr1:87369011-87369232(-)$1	221	55	94	15.6576
AGGGGACACGGGCUCAUUGCGGUGUGCGCCCUGCACUCU	chr2:198364403-198364628(-)$1	225	23	62	12.5612
CUUUUCCGUUGCCGCUGGGAGCCGGAGGCGCGGGGACCU	chr19:41859381-41859626(-)$1	245	98	137	11.8949
UCCUGAGGCCCGGUCAGUCUCUUGCUCUGGGGUCUUGGG	chr2:58273799-58274104(+)$1	305	192	231	18.4266
CUCCCGGGGAGCGGGGCCGUGCAGGCCGCGAGCCCGGAG	chr1:38273657-38273942(-)$1	285	237	276	14.5572
CGCCCAGUAGGGACCCAUUCAUUGUGCCGGCGCCUCACU	chr2:176046283-176046491(-)$1	208	153	192	15.2619
GGCUCGCGGAGCCAGGUAACAgcccgggcgcgcgggucc	chr22:37956442-37956696(+)$1	254	138	177	13.9264
AGCAAGCACCUGUACACGGCCGACAUGUUCACGCACGGG	chr6:7910712-7911117(-)$1	405	291	330	11.6534
AAGAGUGGAAUUCUGGGUGUUAGGCCCGCCAUUCGCUUG	chr22:24951926-24952140(+)$1	214	10	49	16.1000
UGUGUGGUUGCAACGGAGAUAAAUUCCCGGAACCGCGAU	chr6:136610750-136611065(-)$1	315	164	203	16.9765
AGGUGAGCGGUGGCCCCGGAGGACGUAGGCCUUUCCGGC	chr9:131266959-131267282(+)$1	323	222	261	15.4960
CCCUGGGUGCCCGCCAUGGGCUUCACGCUGGCGCCCAGC	chr22:43555114-43555330(+)$1	216	139	178	17.6792
GAAUUUCUACAUGACGGCUUUUUGUAAGUUUGUAGUAUU	chr4:4288145-4288400(-)$1	255	132	171	13.7612
CUGUCCCGGCGCCUCAGGCAGCUCUGCGUGGGCCGGGGU	chr19:58919996-58920382(+)$1	386	164	203	15.9968
CGUCAACUUAGCGAGCGCAACAGGCUGCCGCUGAGGAGC	chr1:168195153-168195438(+)$1	285	100	139	16.3674
CCCGACUACAGCCAGCAGUGUCUCUGCAGGGGUGGGAGA	chr1:149899517-149899782(-)$1	265	213	252	13.8972
UCUGUGUAUGUCUCCGCGUCUUCCGCGGAGCGGGUGUGC	chr20:44485808-44486113(-)$1	305	98	137	17.6158
GUGGUGCCGCGUGUGGACCCGAUGGACCCCGGCGACGCC	chr12:110841330-110841583(-)$1	253	28	67	13.0785
CCGCGGAAAUGGUAAGCGCCCCCCACAUGCCUCUCUUCC	chr20:60962338-60962544(+)$1	206	95	134	13.7788
gcACCUCUCGGGCUCCGGCUCCCCGCGCGCAAGAUGGCU	chr16:23847281-23847552(+)$1	271	182	221	12.1504
CGUGAAGCCCAUUUUCAGUCGGGACAUGAACGAGGCCAA	chr22:42486589-42486863(-)$1	274	162	201	13.7515
CGAGCCCUCUGGCAGAGGGUUAACCUGGGUCAAAUGCAC	chr3:119217318-119217700(+)$1	382	127	166	14.0065
UAGAGCCUGAACCCCCUGAACCCCAGGCAGGGUCUCUGC	chr1:201120840-201121064(-)$1	224	18	57	13.9650
GGUGGGGGCGGCGACCUGAGCACCAGGUGAGUCUUUAUC	chr2:231280811-231281150(+)$1	339	206	245	17.1453
AAGAGCGGAGCGUGUGAGCAGUACUGCGGCCUCCUCUCC	chr1:182360743-182360954(-)$1	211	46	85	14.7646
CCCGGGCGGACGAGCACGAACACACGGUGAggcgccccg	chr10:98346390-98346739(-)$1	349	223	262	11.8212
ccAGCUCGGCUUAUGUCGGUCGGCGGCAGCGGAGAGGGG	chr17:30771401-30771733(+)$1	332	268	307	15.8138
UCUGGGAAGCACCUGCGUGGCUGACGCCUCCUGUGCCCG	chr19:1388731-1388985(+)$1	254	45	84	14.9982
GCGGCGGCGGUGUCUGGCCAGGCGGUAGGCGCUGCCUGG	chr8:42752170-42752428(+)$1	258	51	90	13.1107
CGGAAGAUGGCGGCGGCCGCAGAGUUGUCGCUACUGGAG	chr6:8102597-8102855(-)$1	258	95	134	14.4887
GCAGCUUGAGCGCCGAGGAGUGCCCUGAACGCUCAACUC	chr18:2571181-2571589(-)$1	408	226	265	15.7579
GGUGUCCCAGUCUCCCGGUGCUUCCCUGAGGCUGAGGCG	chr17:80416514-80416757(+)$1	243	99	138	15.1676
UUUAGCUGAUCGUCGUGUGUUGCCACCCAUUCAUGUCAA	chr11:125465675-125465920(+)$1	245	95	134	13.6734
CGGAGCCGGGCGGAGCUGGCUUGCGGCUCCCGGGGCCGG	chr1:202976436-202976715(+)$1	279	102	141	13.9174
guacgugcgagcgcgcaugagcguacgugcgugugcgcg	chr3:25831488-25831739(+)$1	251	50	89	15.5114
AAGUCAUCCCAGUGUAAGUUACUCCUACAUAUUGAAUGA	chr12:42729583-42729865(+)$1	282	180	219	13.2411
GGAAUGAGCUGGAAGGCCGUGAUGCCAUCUUCAAGCAGU	chr10:72645570-72645787(-)$1	217	171	210	16.2002
AGCGCUGAGUAGGGGUCGGAGCAGAGCUGGGGCAGGGCU	chr17:72868887-72869187(-)$1	300	247	286	13.8019
GGGCGGUUGGCGUUGCGCAGAAGGCGGCGGCGGUGGUGG	chr12:54673707-54673970(-)$1	263	72	111	13.1465
UUUCGCCUAGUGAGCAGUAGCCAACAUGUCAGGGUGGGA	chr22:42017892-42018097(+)$1	205	91	130	18.0052

#DB
(((((((((((((.((((......)))).).))))))))	chr2:27294368-27294575(-)$1	1	131	170	16.8575
(((((((((((((.(((.((...)).))).)))))))))	chr5:126365934-126366187(-)$1	1	169	208	14.5057
.(((((((((((..((((....)))).))))))))))).	chr3:51975696-51975987(-)$1	1	138	177	12.9469
((.((((((.((((((.(......).)))))).))).))	chr10:97050549-97050862(-)$1	1	270	309	12.3793
((((((.(.((...((((.....)))).)).).))))))	chr10:18948319-18948713(+)$1	1	152	191	17.1728
(.(((((((...(((((......)).))).))))))).)	chr19:13213372-13213658(-)$1	1	190	229	16.1728
(((((((((((.(.((((.....)))).).).)))))))	chr16:57481280-57481590(+)$1	1	169	208	18.3942
((((((((..((..(((......))).))))))))))))	chr22:21271713-21271971(+)$1	1	166	205	17.1838
..((((((.((((((.((.....)).))))))..)))))	chr6:158589288-158589528(+)$1	1	73	112	13.2065
((.(((((..((((((((.....)).))).)))..))))	chr10:74856446-74856719(-)$1	1	145	184	15.1413
((((....(((((.((((.....)).))))))).))).)	chr15:75630301-75630573(+)$1	1	145	184	14.4918
(((...(((((((((((.(.....).)).))))))))).	chr20:60831012-60831321(+)$1	1	5	44	15.5853
.((((((((((...(((......)))...))))))))))	chr8:28570876-28571168(+)$1	1	67	106	17.3464
((((.(((...((((.((.....)).))))...))).))	chr1:87369011-87369232(-)$1	1	55	94	15.6576
(.(((.((.((((.(((......))).))))))...)))	chr2:198364403-198364628(-)$1	1	23	62	12.5612
..(((((((.(((.((((...)))).)))))))))))))	chr19:41859381-41859626(-)$1	1	98	137	11.8949
.((((((((((.(..(((.....))).).))))))))))	chr2:58273799-58274104(+)$1	1	192	231	18.4266
((((..(((..((.((((.....)))).))..)))))))	chr1:38273657-38273942(-)$1	1	237	276	14.5572
)((((((((((..(((((.....)))..))..))).)))	chr2:176046283-176046491(-)$1	1	153	192	15.2619
((((((((..(((.(((....)))..))).)))))))))	chr22:37956442-37956696(+)$1	1	138	177	13.9264
.(..((((..(((.(......))))))))..)...))))	chr6:7910712-7911117(-)$1	1	291	330	11.6534
..(((((((....(((((.....)))))...))))))).	chr22:24951926-24952140(+)$1	1	10	49	16.1000
(((((((((.(...((((.....)))).).)))))))..	chr6:136610750-136611065(-)$1	1	164	203	16.9765
(((.(..(((.((((.((.....))..))))...)))..	chr9:131266959-131267282(+)$1	1	222	261	15.4960
..(((((((((.((..((.....)).)).))))))))).	chr22:43555114-43555330(+)$1	1	139	178	17.6792
((((..(((((.(((.((.....))..)))))))).)))	chr4:4288145-4288400(-)$1	1	132	171	13.7612
...(((((((.((.(((......))).).).))))))).	chr19:58919996-58920382(+)$1	1	164	203	15.9968
((.(..(((((((.((((.....)).)))))))))..).	chr1:168195153-168195438(+)$1	1	100	139	16.3674
(.(..((((..((.((((.....)))).)).))))..).	chr1:149899517-149899782(-)$1	1	213	252	13.8972
(((((((((.((((((((.....))))))).).))))))	chr20:44485808-44486113(-)$1	1	98	137	17.6158
((((((.(((..(.((.((....)).)))..))).))))	chr12:110841330-110841583(-)$1	1	28	67	13.0785
..((((((..((((.(.(.....).).))))....))))	chr20:60962338-60962544(+)$1	1	95	134	13.7788
((.(.(((.(.((..(((....))).)).).))).))))	chr16:23847281-23847552(+)$1	1	182	221	12.1504
(((...(((....((((((....)).))))...)))...	chr22:42486589-42486863(-)$1	1	162	201	13.7515
((.((....((((..(((.....)))..))))...)).)	chr3:119217318-119217700(+)$1	1	127	166	14.0065
.(((.((((.....((((.....)))))))).)))..))	chr1:201120840-201121064(-)$1	1	18	57	13.9650
(((((((((....(((((.....)))))..)))))))))	chr2:231280811-231281150(+)$1	1	206	245	17.1453
(.(((.((((.((...((.....))...)))))).))).	chr1:182360743-182360954(-)$1	1	46	85	14.7646
((.(((((..(..((.((......))))..).))))).)	chr10:98346390-98346739(-)$1	1	223	262	11.8212
((..(((.(((...((((.....))))))).)))..)))	chr17:30771401-30771733(+)$1	1	268	307	15.8138
..((((..(((...((((.....))))....))).))))	chr19:1388731-1388985(+)$1	1	45	84	14.9982
((((((((((((((((.((....)))))))))))))..)	chr8:42752170-42752428(+)$1	1	51	90	13.1107
(((....((((((((((......)))))))))))))).)	chr6:8102597-8102855(-)$1	1	95	134	14.4887
((((.(((((((...(((.....)))...))))))))).	chr18:2571181-2571589(-)$1	1	226	265	15.7579
((((((.(((((((..((.....))..))))))).))))	chr17:80416514-80416757(+)$1	1	99	138	15.1676
(((.(((((.....(((......)))....))).)).))	chr11:125465675-125465920(+)$1	1	95	134	13.6734
)((((((((.((((((((.....)))))))...).))))	chr1:202976436-202976715(+)$1	1	102	141	13.9174
((((((((..(((((((((......))))))))))))))	chr3:25831488-25831739(+)$1	1	50	89	15.5114
.(((((((...(((((.(.....).)))))...).))))	chr12:42729583-42729865(+)$1	1	180	219	13.2411
(((((..((((((.(((......))).)))...))).))	chr10:72645570-72645787(-)$1	1	171	210	16.2002
(((.(((.....((.((......)).))....))).)))	chr17:72868887-72869187(-)$1	1	247	286	13.8019
((((.((((.((((((((.....)).)))))).)))).)	chr12:54673707-54673970(-)$1	1	72	111	13.1465
((((((((..(((.((((.....)).)))))))))))))	chr22:42017892-42018097(+)$1	1	91	130	18.0052

#PSSM
= : 0.16	f : 0.11	c : 0.09	d : 0.09	g : 0.09	: : 0.07	e : 0.07	b : 0.05	! : 0.05	# : 0.03	" : 0.03	i : 0.03	a : 0.01	+ : 0.01	[ : 0.01	
= : 0.20	c : 0.13	f : 0.09	d : 0.09	g : 0.09	[ : 0.07	! : 0.05	e : 0.05	b : 0.03	" : 0.03	i : 0.03	+ : 0.01	a : 0.01	# : 0.01	h : 0.01	
= : 0.20	g : 0.16	c : 0.11	[ : 0.11	f : 0.11	d : 0.05	e : 0.05	i : 0.05	! : 0.03	# : 0.01	a : 0.01	b : 0.01	h : 0.01	
= : 0.20	g : 0.13	c : 0.09	f : 0.09	e : 0.09	a : 0.05	! : 0.05	[ : 0.05	i : 0.05	" : 0.03	d : 0.03	b : 0.03	# : 0.01	h : 0.01	
= : 0.20	g : 0.13	c : 0.09	[ : 0.09	i : 0.07	f : 0.07	! : 0.07	e : 0.05	# : 0.03	" : 0.03	d : 0.03	b : 0.03	a : 0.01	h : 0.01	
= : 0.22	g : 0.15	c : 0.09	! : 0.09	d : 0.09	f : 0.07	i : 0.05	# : 0.05	e : 0.03	" : 0.03	[ : 0.03	b : 0.01	h : 0.01	
= : 0.20	c : 0.15	g : 0.15	d : 0.09	i : 0.07	[ : 0.05	f : 0.05	e : 0.05	# : 0.05	! : 0.05	b : 0.01	h : 0.01	
= : 0.22	c : 0.16	g : 0.16	d : 0.09	i : 0.07	e : 0.05	a : 0.03	f : 0.03	# : 0.03	b : 0.01	[ : 0.01	! : 0.01	h : 0.01	$ : 0.01	
c : 0.18	= : 0.16	g : 0.15	! : 0.15	[ : 0.07	d : 0.07	i : 0.05	e : 0.03	" : 0.03	# : 0.01	h : 0.01	$ : 0.01	
! : 0.18	= : 0.13	[ : 0.11	c : 0.11	g : 0.07	i : 0.05	" : 0.05	d : 0.05	# : 0.05	$ : 0.05	e : 0.03	b : 0.01	f : 0.01	a : 0.01	
c : 0.16	= : 0.11	a : 0.09	i : 0.07	[ : 0.07	f : 0.05	" : 0.05	d : 0.05	! : 0.05	# : 0.05	g : 0.05	$ : 0.05	b : 0.03	e : 0.03	
" : 0.11	c : 0.11	b : 0.09	d : 0.09	g : 0.09	= : 0.07	[ : 0.07	i : 0.05	f : 0.05	! : 0.05	# : 0.05	$ : 0.05	e : 0.03	a : 0.01	
c : 0.15	" : 0.11	b : 0.11	a : 0.09	d : 0.09	! : 0.07	g : 0.07	i : 0.05	f : 0.05	# : 0.05	e : 0.03	$ : 0.03	= : 0.03	
[ : 0.28	" : 0.13	! : 0.09	d : 0.07	b : 0.07	f : 0.05	c : 0.05	e : 0.05	g : 0.05	i : 0.03	$ : 0.03	= : 0.03	
d : 0.26	c : 0.20	b : 0.11	! : 0.09	f : 0.05	e : 0.05	i : 0.03	g : 0.03	[ : 0.03	" : 0.03	= : 0.03	a : 0.01	
c : 0.26	d : 0.22	b : 0.13	[ : 0.09	e : 0.05	f : 0.03	! : 0.03	g : 0.03	= : 0.03	o : 0.01	a : 0.01	" : 0.01	i : 0.01	
b : 0.30	c : 0.24	d : 0.22	[ : 0.09	e : 0.03	g : 0.03	o : 0.01	= : 0.01	i : 0.01	
b : 0.30	d : 0.20	o : 0.18	c : 0.09	a : 0.05	[ : 0.03	e : 0.03	g : 0.03	m : 0.01	i : 0.01	
n : 0.56	o : 0.24	b : 0.07	m : 0.05	a : 0.01	l : 0.01	i : 0.01	
n : 0.58	o : 0.26	m : 0.11	b : 0.01	l : 0.01	
n : 0.58	o : 0.26	m : 0.11	l : 0.03	
n : 0.58	o : 0.24	m : 0.09	l : 0.01	d : 0.01	c : 0.01	a : 0.01	
n : 0.58	o : 0.24	c : 0.05	m : 0.05	d : 0.03	l : 0.01	
b : 0.33	c : 0.24	d : 0.18	o : 0.07	e : 0.03	g : 0.03	a : 0.03	n : 0.01	= : 0.01	
b : 0.35	c : 0.22	d : 0.20	a : 0.03	e : 0.03	g : 0.03	] : 0.03	2 : 0.01	= : 0.01	o : 0.01	
] : 0.32	d : 0.20	c : 0.18	2 : 0.07	e : 0.05	g : 0.03	= : 0.03	a : 0.01	3 : 0.01	b : 0.01	i : 0.01	
d : 0.22	b : 0.16	] : 0.13	c : 0.09	2 : 0.09	f : 0.05	3 : 0.05	e : 0.05	g : 0.03	= : 0.03	4 : 0.01	i : 0.01	
b : 0.18	d : 0.15	c : 0.15	] : 0.09	= : 0.05	f : 0.05	3 : 0.05	e : 0.05	g : 0.05	a : 0.03	2 : 0.03	4 : 0.03	i : 0.01	
c : 0.16	d : 0.15	] : 0.11	b : 0.11	g : 0.07	= : 0.05	f : 0.05	a : 0.05	3 : 0.05	4 : 0.05	e : 0.03	2 : 0.03	i : 0.01	
d : 0.13	] : 0.11	= : 0.11	g : 0.11	b : 0.09	2 : 0.07	c : 0.07	a : 0.05	f : 0.05	i : 0.05	4 : 0.05	e : 0.03	3 : 0.01	
= : 0.15	] : 0.13	g : 0.11	3 : 0.11	d : 0.11	i : 0.07	2 : 0.07	f : 0.05	c : 0.05	a : 0.03	e : 0.03	4 : 0.03	
= : 0.16	g : 0.15	c : 0.11	3 : 0.11	i : 0.09	f : 0.05	a : 0.05	] : 0.05	d : 0.05	e : 0.03	2 : 0.03	4 : 0.03	b : 0.01	
= : 0.18	c : 0.18	g : 0.15	3 : 0.15	i : 0.09	] : 0.07	e : 0.05	d : 0.03	2 : 0.01	b : 0.01	4 : 0.01	
c : 0.22	= : 0.20	g : 0.15	i : 0.09	3 : 0.07	d : 0.07	2 : 0.03	] : 0.03	e : 0.03	a : 0.03	4 : 0.01	
= : 0.22	c : 0.18	g : 0.13	] : 0.13	i : 0.07	3 : 0.05	d : 0.05	2 : 0.03	e : 0.03	f : 0.01	4 : 0.01	b : 0.01	
= : 0.22	c : 0.13	g : 0.13	i : 0.07	f : 0.07	d : 0.07	2 : 0.07	e : 0.05	] : 0.05	b : 0.03	3 : 0.01	a : 0.01	h : 0.01	
= : 0.20	g : 0.11	c : 0.11	f : 0.09	d : 0.09	i : 0.07	] : 0.07	e : 0.07	2 : 0.07	b : 0.03	3 : 0.01	h : 0.01	
= : 0.20	c : 0.11	] : 0.11	i : 0.09	f : 0.09	g : 0.09	d : 0.07	e : 0.05	3 : 0.03	2 : 0.03	a : 0.03	b : 0.01	h : 0.01	
= : 0.20	c : 0.11	f : 0.11	3 : 0.09	e : 0.07	d : 0.07	i : 0.05	g : 0.05	2 : 0.05	] : 0.05	a : 0.03	: : 0.01	b : 0.01	h : 0.01	

#score	790.5123520772373
#seq	53
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF154DRN_RBFOX2_CDS_m2_run2.txt

#BEAR
!!bb[eeeee[eeeeemmmmeeeee]eeeee]bb22dd	chr11:18034285-18034515(-)$1	230	123	161	10.5493
bb[ggggggg[eeeeellleeeee]ggggggg]bb]cc	chr11:829408-829694(+)$1	286	22	60	10.7459
cc[bb"""hhhhhhhhmmmmhhhhhhhh333bb]cccc	chr4:109543205-109543434(+)$1	229	142	180	11.2398
[ggggggg[a!!eeeeellleeeee22a]ggggggg]a	chr11:65339937-65340249(+)$1	312	113	151	11.9649
"""ccc[ccc[bb!!bbmmmmbb22bbccc]ccc333f	chr7:44799651-44799903(+)$1	252	135	173	10.8994
fffffccc!!ccc[ccclllccccccccc22ffffffE	chr20:61917369-61917604(+)$1	235	29	67	10.3428
!ccc"""a!!bb[cccmmmmccc]bb22accc]dddd2	chr12:125270682-125270931(-)$1	249	62	100	12.2512
:===========[ddddllldddd]===========A}	chr1:16270581-16270847(-)$1	266	202	240	10.8011
###ffffff"""acccmmmmccc]a4444ffffff444	chr19:44117443-44117699(-)$1	256	41	79	13.1964
ggg[dddd[a!!ddddmmmmdddd22addddggggggg	chr22:51153076-51153369(+)$1	293	39	77	12.3414
e"""bb!!eeeee[bbmmmmbb]eeeee22bb22eeee	chr11:62156753-62157123(+)$1	370	80	118	12.2954
cccc[cccbb####ccclllcccbb]cccccc22ccc4	chr4:1804661-1804868(+)$1	207	121	159	10.8598
ffffff[bbbb[ddddmmmmdddd]bb333bb]fffff	chr3:64008122-64008422(-)$1	300	5	43	11.3206
iiiiii[ffffff[bblllbbffffff]iiiiiiiiid	chr19:6746105-6746357(+)$1	252	152	190	11.4003
!bb[a!!ccc[eeeeemmmmeeeee]ccc22a]bb22a	chr21:47565629-47565875(-)$1	246	112	150	12.2339
[a[ffffff[ffffffmmmmffffffffffff]a]bb]	chr8:144917475-144917754(-)$1	279	59	97	10.8956
c[dddd[a[ggggggglllggggggg]a333dddd]cc	chr7:128828802-128829124(+)$1	322	53	91	11.1219
gggeeeee[ccc!!bbmmmmbb22ccc4444eeeee33	chr22:37962398-37962686(+)$1	288	230	268	13.1882
ggggggeeeee"""bblllbb333eeeee]ggggggg]	chr6:31696672-31696976(-)$1	304	79	117	11.2944
ggggggg$$$$$ccc[ammmma]ccc333ggggggg::	chrX:153197583-153197879(-)$1	296	169	207	10.8430
"""ggggggg[eeeeellleeeee4444gggggggiii	chr4:1804547-1804788(+)$1	241	54	92	12.0744
==="""eeeeebb[bbmmmmbb]bb]eeeee4444===	chr20:61917404-61917631(+)$1	227	47	85	12.6232
#dddd[aeeeee[cccmmmmccc]eeeee4444a]ddd	chr20:35176475-35176758(-)$1	283	223	261	11.6066
[eeeeeccc[ccc[bbmmmmbb]ccc]ccc333eeeee	chr20:61917311-61917556(+)$1	245	181	219	13.4894
i!!eeeee!!eeeeeammmma]eeeee]eeeee22iii	chr14:105934556-105934788(+)$1	232	18	56	12.1083
c!!bb[a[a[a[ddddmmmmdddd]a]a]a]bb]ccc]	chr16:1825163-1825486(+)$1	323	232	270	13.7733
iii[ccc[ccc[ddddmmmmddddccc22ccc333iii	chr4:140641251-140641498(+)$1	247	164	202	14.2395
eeee"""ccc####bbmmmmbbccc22eeeee4444bb	chr12:1910114-1910357(-)$1	243	86	124	12.2666
!!cccddddgggggggmmmmggggggg22dddd]ccc4	chrX:153031551-153031797(+)$1	246	196	234	12.1158
###dddd[bbccc[bbmmmmbb]ccc]bb]dddd4444	chr19:35760808-35761127(+)$1	319	77	115	12.3270
ee[dddd"""ccc[bbmmmmbb]ccc22dddd]eeeee	chr6:128327063-128327342(-)$1	279	188	226	12.4155
ffggggggggggggggmmmmggggggg666666ggggg	chr16:70288136-70288397(-)$1	261	214	252	11.0738
gggggggiiiiiiiiimmmmiiiiiiiii]gggggggF	chr2:241512950-241513312(+)$1	362	187	225	13.7368
fffffccc!!ccc[bbmmmmbbccc22ccc]ffffff2	chr7:150777599-150777887(-)$1	288	156	194	13.0315
:hhhhhhhhcccddddmmmmdddd]ccc333hhhhhhh	chr16:4851217-4851488(-)$1	271	50	88	10.6135
iiiiiccceeeee!!ammmma22eeeee22ccc]iiii	chr16:725966-726266(+)$1	300	170	208	13.0136
iiiiigggggggddddmmmmdddd]ggggggg333iii	chr20:36014679-36014983(+)$1	304	20	58	14.4028
ffffffa!!ccc[cccmmmmccc]ccc22a333fffff	chr4:140651654-140651929(+)$1	275	91	129	13.1372
a[a[bb"""ccc[cccmmmmccc]ccc4444bba]a]d	chr15:22955931-22956191(+)$1	260	47	85	13.6345
b[bb[dddd[eeeeeammmma]eeeee]dddd]bbbb]	chr19:35769655-35769943(+)$1	288	40	78	10.4382
b"""ccc[ccc[bb[bblllbb]bb]ccc]ccc22bbc	chr20:3145226-3145577(-)$1	351	196	234	10.6852
eeebb!!ccc[ddddoooooodddd]ccc22bb]eeee	chr17:7311490-7311793(+)$1	303	122	160	9.8519
b[ggggggg####cccmmmmcccggggggg]bbbb444	chr13:113761090-113761338(+)$1	248	146	184	13.4674
:ggggggg[dddd!!ammmma22dddd]gggggggfff	chr21:46876225-46876484(+)$1	259	151	189	11.5994
####ggggggg"""bbmmmmbb]ggggggghhhhhhhh	chr11:63765076-63765372(+)$1	296	219	257	13.1878
=======ccc!!ddddmmmmdddd22ccc:hhhhhhhh	chr17:77082264-77082515(+)$1	251	147	185	11.7107
bb!!a!!bb[a!!cccmmmmccc22a]bb22a22bb::	chr19:18728987-18729308(+)$1	321	1	39	10.3417
=======[a[ddddoooooodddd22a]==========	chr12:58005533-58005817(+)$1	284	17	55	12.2107
gffffff[adddd[bbmmmmbb]dddd333a]ffffff	chr1:36787809-36788065(+)$1	256	19	57	12.6242
gg[bb!!ffffff[bbmmmmbb]ffffff22bb]gggg	chr3:52588655-52589021(-)$1	366	142	180	12.8648
[===========[ddddllldddd]===========33	chr1:16270411-16270680(-)$1	269	35	73	13.5289
iiiiiii"""ffffffmmmmffffff333iiiiiiiii	chr19:17313654-17313946(+)$1	292	79	117	13.9911
b[bb$$$$$bb[ddddmmmmddddbb4444bb]bb]ee	chr11:500573-500861(-)$1	288	174	212	10.6790
ggggggg"""ffffffmmmmffffff]gggggggHHHH	chr14:69619479-69619756(-)$1	277	232	270	10.2535
f!!ggggggg[bb[bbmmmmbb]bbggggggg666666	chr9:38620169-38620510(-)$1	341	198	236	11.4414
"ddddcccbb!!ddddmmmmdddd333bb]ccc]dddd	chr19:3543821-3544119(-)$1	298	58	96	11.7577
diiiiiiiii[bb[bbmmmmbb]bbiiiiiiiii]ddd	chr2:10563124-10563486(+)$1	362	243	281	13.5749
e[ccc[ccc!!bb[bbmmmmbb]bb22ccc]ccc22ee	chr11:118984316-118984626(+)$1	310	62	100	13.1701

#otherMatches

#Seq PSSM
AGCCGGGCUCUGGGUUGAAGGAUCCUGGGCUgggagcg	chr11:18034285-18034515(-)$1	230	123	161	10.5493
GGCGGGCUCGACGUGCAGGGCACGGCGGGCUCUCUGGA	chr11:829408-829694(+)$1	286	22	60	10.7459
CAGACUUCGAGGGGUAAGUGUACCUUUUACUGUGUGCA	chr4:109543205-109543434(+)$1	229	142	180	11.2398
ggggccgcggggugcggggccugcgggcggcggcccgg	chr11:65339937-65340249(+)$1	312	113	151	11.9649
ACGGGGGCAGCGUCAGCUACAGCCAACCUGGCCUGAGU	chr7:44799651-44799903(+)$1	252	135	173	10.8994
CUGUUUCCUGGCAUGAGGCGCUCUGCGGACAGACGGGG	chr20:61917369-61917604(+)$1	235	29	67	10.3428
AGCCAUUCGCUUGCCUGCUGGGGGAAAGGGGCCUCAGA	chr12:125270682-125270931(-)$1	249	62	100	12.2512
ACUUCCGCGGGGGAGCUCCCGGUUGCUCUGCGGAGGGC	chr1:16270581-16270847(-)$1	266	202	240	10.8011
CUAUGAUCUCUUGCCUUGUUGGGACUUCUAGAUCGGCU	chr19:44117443-44117699(-)$1	256	41	79	13.1964
AAGUGAGGUCCACAGGGUCACCUGGAGUCUCCUUGAGG	chr22:51153076-51153369(+)$1	293	39	77	12.3414
UUGGUGCAGCUCCAGGAUGUCugggagugacaaugggg	chr11:62156753-62157123(+)$1	370	80	118	12.2954
CCCGAGCAGGUAACGACUCUGUCCCAUGCCGGCCGGCA	chr4:1804661-1804868(+)$1	207	121	159	10.8598
GAGGUUGGCAUUGCCAGGAUUGGCCGUCACGCAAACCU	chr3:64008122-64008422(-)$1	300	5	43	11.3206
GGCGGGUGGCGGGACCCUGGGCUCGCUUCCUGCCGCUG	chr19:6746105-6746357(+)$1	252	152	190	11.4003
gcggcucgguggcggcggccgcugcggccauggugagc	chr21:47565629-47565875(-)$1	246	112	150	12.2339
UCUCCUGAGAGUGGGGCUGACCCUGCCUUGGGCGCCGA	chr8:144917475-144917754(-)$1	279	59	97	10.8956
ggggcccgggcccggAUUCUCUGGGCGCACAGGUCGCC	chr7:128828802-128829124(+)$1	322	53	91	11.1219
GGUGGGGGCGCCCCCCCGGAGGAUGGCAUCUCCCCCUG	chr22:37962398-37962686(+)$1	288	230	268	13.1882
CCUGAUCCGGGGAGUCCCAGAGAGCCUGGCGUCGGGGG	chr6:31696672-31696976(-)$1	304	79	117	11.2944
UCCUGGGGUACCUCAGCUUUUGGUGAAGAUCCAGGAAG	chrX:153197583-153197879(-)$1	296	169	207	10.8430
CUCGGGGGCGUGCCUGAGCCGGGUCUCUUGUCCCCGCA	chr4:1804547-1804788(+)$1	241	54	92	12.0744
UCGCUCCUCCCCCCCAAGCAUGUGGUGGGAGCUCUUGA	chr20:61917404-61917631(+)$1	227	47	85	12.6232
GUUCAGCUUCUCCCCAAACAUGGUGAGGAACAUGGUGA	chr20:35176475-35176758(-)$1	283	223	261	11.6066
CUGUGCACGAGGCUGUCCUCGCUGCCAUGUCCCGCACA	chr20:61917311-61917556(+)$1	245	181	219	13.4894
CUGUUGCGCUGUCCCCACCUGCGGGGCCUGCAGAUGGC	chr14:105934556-105934788(+)$1	232	18	56	12.1083
CGGAGGUGGAAGAGGUGAGGGCCUGUCUGAGCUGGGUG	chr16:1825163-1825486(+)$1	323	232	270	13.7733
UGACGUUCGCAUGCUCUGGAGGGCUGCUUGGCUUCUUA	chr4:140641251-140641498(+)$1	247	164	202	14.2395
GACUAUCAGGCCAUGUGCAAACCCUCGAGUCACCACCA	chr12:1910114-1910357(-)$1	243	86	124	12.2666
UUCCUCCUUGCAGCCGGCCCUGGCUGCCCAAGGCAGGU	chrX:153031551-153031797(+)$1	246	196	234	12.1158
CCUGCAGCGCCCUUCCCGCUGGUAGGUGCCCUGCCACC	chr19:35760808-35761127(+)$1	319	77	115	12.3270
UGAUGUACAACUUUACGUGUGUUAAGGAUGCAGUAUCC	chr6:128327063-128327342(-)$1	279	188	226	12.4155
CUGUUCCCAGCCUGGUAAGGACCGGGCCUGAUUUGGGA	chr16:70288136-70288397(-)$1	261	214	252	11.0738
GGUGAGCGGGGCUGGGGCUGCUCGGCCUCAGCUCACCC	chr2:241512950-241513312(+)$1	362	187	225	13.7368
GGGAGCUGGUGUUAGCGGCAGCGGCCACGGUCUCCUGG	chr7:150777599-150777887(-)$1	288	156	194	13.0315
CCCUGUCCUGCAGACCAGCUGGUUGUGCGAUGGGACAG	chr16:4851217-4851488(-)$1	271	50	88	10.6135
GCUGGAGGACUGGGACCCAGGCACCAGUGCCCUGCCAG	chr16:725966-726266(+)$1	300	170	208	13.0136
AGGGCAGUGUGGAGGCAGGCGCCUGCUGCACUCUCGCC	chr20:36014679-36014983(+)$1	304	20	58	14.4028
CCAUGCCACCUGAGCCUGGGGGCACGGAGGACUGCAUG	chr4:140651654-140651929(+)$1	275	91	129	13.1372
GUGUGUGUCGAGUGACUAACGUCUCUCUCCUGCCUCUC	chr15:22955931-22956191(+)$1	260	47	85	13.6345
GUGAGCACCCCGGACCCUCAGUGUCUGCGGUGGUCCCG	chr19:35769655-35769943(+)$1	288	40	78	10.4382
CAGGCCGAGCUGGCGGCUGAGCGGCGGGCCCGGGAGCG	chr20:3145226-3145577(-)$1	351	196	234	10.6852
GGCUCAAcgcgggggagggggucccggcggcggcgccc	chr17:7311490-7311793(+)$1	303	122	160	9.8519
UGCCACUGGUUUUGUCCUGGGGCCCAGUGGGGGCCAAC	chr13:113761090-113761338(+)$1	248	146	184	13.4674
UGUGGGGCCGGGUCUUGCUAAUAACUCUGCCCUGCUCG	chr21:46876225-46876484(+)$1	259	151	189	11.5994
UUUGAGGGGCCAGGCCUCUUGGAGGCCCCUCCUGCUUC	chr11:63765076-63765372(+)$1	296	219	257	13.1878
UUUAUUCAGCCCCUGCAUGAGCGGAUGCUAAGGCCGGG	chr17:77082264-77082515(+)$1	251	147	185	11.7107
UGAGGAAGGCCAAGAUCCGAGUCAAGACCAGCAGCAAG	chr19:18728987-18729308(+)$1	321	1	39	10.3417
CCCUCCCACAGCCUGGACCGGGGUAGGAGGGAGGGGGG	chr12:58005533-58005817(+)$1	284	17	55	12.2107
UGGGGUAGCUCUGAGCUCAUGUGCAGGUCCGGUACCCC	chr1:36787809-36788065(+)$1	256	19	57	12.6242
UCCGCCAGGCCUUCCACCUUUGCAGGGCCCAGUUGAUG	chr3:52588655-52589021(-)$1	366	142	180	12.8648
ACUUCCGCGGGGGAGCUCCCGGUUGCUCUGCGGAGGGC	chr1:16270411-16270680(-)$1	269	35	73	13.5289
AUUGGCAGGAGCAUGCACGUGUGUGUCAGUGUCAAUGU	chr19:17313654-17313946(+)$1	292	79	117	13.9911
CGUGGUCCACAUGACCCUGGGGUCUGCUCACAGGCUGG	chr11:500573-500861(-)$1	288	174	212	10.6790
GCCAUUGAAUUCUCCAACAAUGGAGGCCAGUGGCUGGU	chr14:69619479-69619756(-)$1	277	232	270	10.2535
CGGGUGGUGGGCGUCUGAGAAGUCGCCACCAUGAGGAA	chr9:38620169-38620510(-)$1	341	198	236	11.4414
AGUGCCCCCUCAUCUGGGUGCAGAGACAGUGGGUGCAU	chr19:3543821-3544119(-)$1	298	58	96	11.7577
cgggaugcagucagggacacccgugcuguauccuggcu	chr2:10563124-10563486(+)$1	362	243	281	13.5749
GAGUGAGAGCAGUGGCCCCAGCAAUACCUCCCAUAGCA	chr11:118984316-118984626(+)$1	310	62	100	13.1701

#DB
..((.(((((.(((((....))))).))))).))..))	chr11:18034285-18034515(-)$1	1	123	161	10.5493
((.(((((((.(((((...))))).))))))).)).))	chr11:829408-829694(+)$1	1	22	60	10.7459
((.((...((((((((....))))))))...)).)))(	chr4:109543205-109543434(+)$1	1	142	180	11.2398
.(((((((.(..(((((...)))))..).))))))).)	chr11:65339937-65340249(+)$1	1	113	151	11.9649
...(((.(((.((..((....))..))))).)))...)	chr7:44799651-44799903(+)$1	1	135	173	10.8994
((((((((..(((.(((...)))))))))..))))))(	chr20:61917369-61917604(+)$1	1	29	67	10.3428
.(((...(..((.(((....))).))..)))).)))).	chr12:125270682-125270931(-)$1	1	62	100	12.2512
.(((((((((((.((((...)))).)))))))))))).	chr1:16270581-16270847(-)$1	1	202	240	10.8011
...((((((...((((....))).)....))))))...	chr19:44117443-44117699(-)$1	1	41	79	13.1964
(((.((((.(..((((....))))..))))))))))))	chr22:51153076-51153369(+)$1	1	39	77	12.3414
(...((..(((((.((....)).)))))..))..))))	chr11:62156753-62157123(+)$1	1	80	118	12.2954
((((.(((((....(((...))))).))))))..))).	chr4:1804661-1804868(+)$1	1	121	159	10.8598
((((((.((((.((((....)))).))...)).)))))	chr3:64008122-64008422(-)$1	1	5	43	11.3206
((((((.((((((.((...)))))))).))))))))))	chr19:6746105-6746357(+)$1	1	152	190	11.4003
.((.(..(((.(((((....))))).)))..).))..)	chr21:47565629-47565875(-)$1	1	112	150	12.2339
.(.((((((.((((((....)))))))))))).).)).	chr8:144917475-144917754(-)$1	1	59	97	10.8956
(.((((.(.(((((((...))))))).)...)))).))	chr7:128828802-128829124(+)$1	1	53	91	11.1219
((((((((.(((..((....))..)))....)))))..	chr22:37962398-37962686(+)$1	1	230	268	13.1882
(((((((((((...((...))...))))).))))))).	chr6:31696672-31696976(-)$1	1	79	117	11.2944
(((((((.....(((.(....).)))...)))))))..	chrX:153197583-153197879(-)$1	1	169	207	10.8430
...(((((((.(((((...)))))....))))))))))	chr4:1804547-1804788(+)$1	1	54	92	12.0744
(((...(((((((.((....)).)).)))))....)))	chr20:61917404-61917631(+)$1	1	47	85	12.6232
.((((.((((((.(((....))).)))))....).)))	chr20:35176475-35176758(-)$1	1	223	261	11.6066
.((((((((.(((.((....)).))).)))...)))))	chr20:61917311-61917556(+)$1	1	181	219	13.4894
(..(((((..((((((....).))))).)))))..)))	chr14:105934556-105934788(+)$1	1	18	56	12.1083
(..((.(.(.(.((((....)))).).).).)).))).	chr16:1825163-1825486(+)$1	1	232	270	13.7733
(((.(((.(((.((((....)))))))..)))...)))	chr4:140641251-140641498(+)$1	1	164	202	14.2395
((((...(((....((....)))))..)))))....))	chr12:1910114-1910357(-)$1	1	86	124	12.2666
..((((((((((((((....)))))))..)))).))).	chrX:153031551-153031797(+)$1	1	196	234	12.1158
...((((.(((((.((....)).))).)).))))....	chr19:35760808-35761127(+)$1	1	77	115	12.3270
((.((((...(((.((....)).)))..)))).)))))	chr6:128327063-128327342(-)$1	1	188	226	12.4155
))((((((((((((((....)))))))......)))))	chr16:70288136-70288397(-)$1	1	214	252	11.0738
((((((((((((((((....))))))))).))))))))	chr2:241512950-241513312(+)$1	1	187	225	13.7368
((((((((..(((.((....)))))..))).)))))).	chr7:150777599-150777887(-)$1	1	156	194	13.0315
.(((((((((((((((....)))).)))...)))))))	chr16:4851217-4851488(-)$1	1	50	88	10.6135
(((((((((((((..(....)..)))))..))).))))	chr16:725966-726266(+)$1	1	170	208	13.0136
((((((((((((((((....)))).)))))))...)))	chr20:36014679-36014983(+)$1	1	20	58	14.4028
(((((((..(((.(((....))).)))..)...)))))	chr4:140651654-140651929(+)$1	1	91	129	13.1372
(.(.((...(((.(((....))).)))....))).).)	chr15:22955931-22956191(+)$1	1	47	85	13.6345
(.((.((((.((((((....).))))).)))).)))).	chr19:35769655-35769943(+)$1	1	40	78	10.4382
(...(((.(((.((.((...)).)).))).)))..)))	chr20:3145226-3145577(-)$1	1	196	234	10.6852
(((((..(((.((((......)))).)))..)).))))	chr17:7311490-7311793(+)$1	1	122	160	9.8519
(.(((((((....(((....)))))))))).))))...	chr13:113761090-113761338(+)$1	1	146	184	13.4674
.(((((((.((((..(....)..)))).)))))))(((	chr21:46876225-46876484(+)$1	1	151	189	11.5994
....(((((((...((....)).)))))))))))))))	chr11:63765076-63765372(+)$1	1	219	257	13.1878
)))))))(((..((((....))))..))).((((((((	chr17:77082264-77082515(+)$1	1	147	185	11.7107
((..(..((.(..(((....)))..).))..)..))..	chr19:18728987-18729308(+)$1	1	1	39	10.3417
(((((((.(.((((......))))..).))))))))))	chr12:58005533-58005817(+)$1	1	17	55	12.2107
(((((((.(((((.((....)).))))...).))))))	chr1:36787809-36788065(+)$1	1	19	57	12.6242
((.((..((((((.((....)).))))))..)).))))	chr3:52588655-52589021(-)$1	1	142	180	12.8648
.(((((((((((.((((...)))).)))))))))))..	chr1:16270411-16270680(-)$1	1	35	73	13.5289
(((((((...((((((....))))))...)))))))))	chr19:17313654-17313946(+)$1	1	79	117	13.9911
(.((.....((.((((....))))))....)).)).))	chr11:500573-500861(-)$1	1	174	212	10.6790
(((((((...((((((....)))))).)))))))))))	chr14:69619479-69619756(-)$1	1	232	270	10.2535
(..(((((((.((.((....)).)))))))))......	chr9:38620169-38620510(-)$1	1	198	236	11.4414
.(((((((((..((((....))))...)).))).))))	chr19:3543821-3544119(-)$1	1	58	96	11.7577
((((((((((.((.((....)).))))))))))).)))	chr2:10563124-10563486(+)$1	1	243	281	13.5749
(.(((.(((..((.((....)).))..))).)))..))	chr11:118984316-118984626(+)$1	1	62	100	13.1701

#PSSM
g : 0.13	b : 0.10	f : 0.10	i : 0.10	e : 0.08	! : 0.06	c : 0.06	[ : 0.06	# : 0.06	" : 0.05	: : 0.05	= : 0.05	a : 0.01	d : 0.01	
g : 0.15	f : 0.10	i : 0.10	[ : 0.10	! : 0.08	= : 0.08	" : 0.06	e : 0.06	b : 0.05	c : 0.05	# : 0.05	d : 0.03	a : 0.01	h : 0.01	
g : 0.17	i : 0.10	[ : 0.08	f : 0.08	= : 0.08	b : 0.06	" : 0.06	c : 0.06	! : 0.06	# : 0.05	d : 0.05	e : 0.05	h : 0.01	a : 0.01	
g : 0.18	b : 0.12	f : 0.12	c : 0.08	i : 0.08	d : 0.08	= : 0.06	[ : 0.06	e : 0.06	" : 0.05	h : 0.01	# : 0.01	! : 0.01	
g : 0.20	f : 0.12	b : 0.10	d : 0.10	c : 0.08	i : 0.08	= : 0.06	[ : 0.05	" : 0.05	e : 0.05	a : 0.03	h : 0.01	$ : 0.01	
g : 0.22	c : 0.13	d : 0.10	f : 0.08	e : 0.06	" : 0.06	= : 0.06	! : 0.06	i : 0.05	[ : 0.05	b : 0.03	h : 0.01	$ : 0.01	
g : 0.20	c : 0.15	e : 0.08	d : 0.08	! : 0.08	" : 0.06	[ : 0.06	= : 0.06	f : 0.05	a : 0.05	i : 0.03	h : 0.01	$ : 0.01	
c : 0.20	g : 0.15	e : 0.10	[ : 0.10	" : 0.08	f : 0.06	d : 0.05	a : 0.03	= : 0.03	! : 0.03	b : 0.03	$ : 0.03	i : 0.03	h : 0.01	
c : 0.15	g : 0.12	e : 0.10	[ : 0.08	! : 0.08	b : 0.08	f : 0.06	" : 0.06	a : 0.05	h : 0.03	= : 0.03	$ : 0.03	d : 0.03	i : 0.03	
c : 0.18	g : 0.13	e : 0.10	[ : 0.10	! : 0.08	b : 0.08	" : 0.06	a : 0.03	= : 0.03	f : 0.03	i : 0.03	d : 0.03	h : 0.01	$ : 0.01	# : 0.01	
c : 0.18	[ : 0.13	e : 0.12	! : 0.08	f : 0.08	g : 0.08	b : 0.05	# : 0.05	d : 0.05	= : 0.03	a : 0.03	h : 0.01	" : 0.01	$ : 0.01	i : 0.01	
e : 0.15	c : 0.15	b : 0.10	! : 0.08	[ : 0.08	f : 0.08	g : 0.06	d : 0.06	" : 0.05	# : 0.05	= : 0.03	h : 0.01	$ : 0.01	i : 0.01	
d : 0.22	e : 0.15	b : 0.10	c : 0.10	[ : 0.10	f : 0.08	# : 0.05	g : 0.05	! : 0.03	" : 0.03	h : 0.01	a : 0.01	i : 0.01	
[ : 0.22	d : 0.22	c : 0.13	e : 0.12	! : 0.06	f : 0.05	g : 0.05	# : 0.03	" : 0.03	h : 0.01	i : 0.01	b : 0.01	
b : 0.27	d : 0.20	c : 0.17	e : 0.12	! : 0.05	f : 0.05	g : 0.05	h : 0.01	i : 0.01	[ : 0.01	o : 0.01	
b : 0.31	d : 0.18	c : 0.15	e : 0.08	a : 0.06	f : 0.05	g : 0.05	o : 0.03	h : 0.01	[ : 0.01	i : 0.01	
m : 0.74	l : 0.08	b : 0.03	c : 0.03	d : 0.03	o : 0.03	e : 0.01	a : 0.01	
m : 0.77	l : 0.18	o : 0.03	
m : 0.77	l : 0.18	o : 0.03	
m : 0.77	l : 0.10	e : 0.03	b : 0.03	o : 0.03	g : 0.01	
b : 0.29	d : 0.20	c : 0.15	e : 0.08	a : 0.06	f : 0.05	g : 0.05	m : 0.03	h : 0.01	i : 0.01	o : 0.01	
b : 0.27	d : 0.22	c : 0.15	e : 0.08	f : 0.06	g : 0.05	] : 0.03	2 : 0.03	h : 0.01	3 : 0.01	a : 0.01	i : 0.01	
d : 0.22	] : 0.22	c : 0.18	e : 0.12	f : 0.06	g : 0.05	2 : 0.05	h : 0.01	b : 0.01	3 : 0.01	i : 0.01	
d : 0.25	e : 0.15	c : 0.12	b : 0.10	] : 0.08	f : 0.08	g : 0.08	2 : 0.05	h : 0.01	3 : 0.01	i : 0.01	
c : 0.18	e : 0.15	b : 0.13	] : 0.12	2 : 0.08	f : 0.08	g : 0.08	d : 0.05	h : 0.01	a : 0.01	4 : 0.01	i : 0.01	3 : 0.01	
c : 0.17	g : 0.13	2 : 0.12	] : 0.10	e : 0.10	f : 0.08	b : 0.06	= : 0.03	4 : 0.03	a : 0.03	i : 0.03	d : 0.03	h : 0.01	3 : 0.01	
c : 0.18	e : 0.13	g : 0.12	2 : 0.10	] : 0.10	4 : 0.05	f : 0.05	3 : 0.05	b : 0.03	= : 0.03	a : 0.03	i : 0.03	d : 0.03	h : 0.01	
c : 0.18	e : 0.12	g : 0.10	2 : 0.08	4 : 0.08	] : 0.08	3 : 0.06	a : 0.05	b : 0.05	= : 0.03	f : 0.03	i : 0.03	h : 0.01	d : 0.01	6 : 0.01	
c : 0.17	g : 0.13	3 : 0.12	e : 0.10	2 : 0.08	4 : 0.06	= : 0.05	d : 0.05	i : 0.05	b : 0.05	] : 0.03	f : 0.03	a : 0.01	6 : 0.01	
g : 0.17	c : 0.12	2 : 0.12	3 : 0.08	] : 0.08	e : 0.06	d : 0.06	4 : 0.06	= : 0.05	i : 0.05	f : 0.03	a : 0.03	6 : 0.01	: : 0.01	
g : 0.17	c : 0.10	3 : 0.08	] : 0.08	2 : 0.08	d : 0.08	e : 0.06	= : 0.05	b : 0.05	i : 0.05	4 : 0.05	f : 0.03	h : 0.03	6 : 0.01	a : 0.01	
g : 0.18	b : 0.15	c : 0.13	d : 0.08	f : 0.06	= : 0.05	i : 0.05	e : 0.05	h : 0.05	] : 0.03	a : 0.03	4 : 0.03	3 : 0.03	6 : 0.01	
] : 0.13	g : 0.13	b : 0.12	c : 0.08	f : 0.06	3 : 0.06	= : 0.05	2 : 0.05	i : 0.05	d : 0.05	4 : 0.05	h : 0.05	e : 0.03	6 : 0.03	
g : 0.15	] : 0.12	b : 0.10	f : 0.10	2 : 0.08	d : 0.05	= : 0.05	i : 0.05	a : 0.05	e : 0.05	h : 0.05	c : 0.03	4 : 0.03	3 : 0.03	6 : 0.01	
g : 0.15	b : 0.10	f : 0.10	e : 0.08	2 : 0.06	c : 0.06	] : 0.06	3 : 0.05	d : 0.05	= : 0.05	i : 0.05	4 : 0.05	h : 0.05	H : 0.01	6 : 0.01	
g : 0.12	i : 0.12	f : 0.10	e : 0.08	c : 0.06	d : 0.06	= : 0.06	4 : 0.06	b : 0.06	2 : 0.05	] : 0.05	h : 0.05	3 : 0.01	a : 0.01	H : 0.01	6 : 0.01	
i : 0.12	c : 0.10	f : 0.10	e : 0.10	d : 0.08	g : 0.08	b : 0.06	3 : 0.05	4 : 0.05	h : 0.05	] : 0.03	: : 0.03	= : 0.03	A : 0.01	2 : 0.01	H : 0.01	6 : 0.01	
d : 0.10	e : 0.10	i : 0.10	f : 0.08	4 : 0.08	c : 0.06	] : 0.06	g : 0.05	h : 0.05	a : 0.03	2 : 0.03	3 : 0.03	: : 0.03	= : 0.03	E : 0.01	} : 0.01	b : 0.01	F : 0.01	H : 0.01	6 : 0.01	

#score	698.8499392047313
#seq	58
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_transcript_m3_run1.txt

#BEAR
ddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr15:42450920-42451236(-)$1	316	100	131	37.9096
dddd^^^^^^^^^^^^^^^^^^^^^^^dddd	chr17:34147235-34147542(+)$1	307	198	229	36.7119
======^^^^^^^^^^^^^^^^^^^^^====	chr15:41573462-41573728(+)$1	266	22	53	36.7110
iiiiiiii^^^^^^^^^^^^^^^^^^iiiii	chr4:73950865-73951112(-)$1	247	88	119	31.9194
iiiiii^^^^^^^^^^^^^^^^^^^^^iiii	chr12:110760709-110760978(+)$1	269	117	148	36.1042
gggggg^^^^^^^^^^^^^^^^^^^^ggggg	chr3:150262033-150262311(-)$1	278	175	206	35.3140
[eeeee^^^^^^^^^^^^^^^^^^^eeeee]	chr9:5809929-5810287(-)$1	358	252	283	33.6436
f[eeeee^^^^^^^^^^^^^^^^^^^eeeee	chr8:17132275-17132567(+)$1	292	5	36	33.5156
ggg[ccc^^^^^^^^^^^^^^^^^^ccc]gg	chr3:156258653-156258884(-)$1	231	192	223	33.1991
======^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:12120800-12121071(+)$1	271	93	124	37.6964
eee[ccc^^^^^^^^^^^^^^^^^^^^^^^^	chr3:141682552-141682809(-)$1	257	92	123	36.1228
!!dddd^^^^^^^^^^^^^^^^^^^^dddd2	chr16:23582881-23583128(+)$1	247	154	185	35.2969
ff[ccc^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:24965344-24965611(-)$1	267	111	142	37.6324
dd####bb^^^^^^^^^^^^^^^^^^bb444	chrX:53574739-53574999(-)$1	260	99	130	32.5235
:eeeee^^^^^^^^^^^^^^^^^^^^eeeee	chr22:22116420-22116679(-)$1	259	30	61	33.9183
hhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:30644677-30644932(-)$1	255	37	68	37.2837
ffff^^^^^^^^^^^^^^^^^^^^^^^^fff	chr20:49510728-49510976(-)$1	248	87	118	36.9905
ddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:117039103-117039382(+)$1	279	51	82	37.9096
======^^^^^^^^^^^^^^^^^^^^^^===	chr17:8377848-8378146(-)$1	298	185	216	37.1660
ffffff^^^^^^^^^^^^^^^^^^^ffffff	chr3:10342707-10342996(-)$1	289	219	250	33.1528
ee[ccc^^^^^^^^^^^^^^^^^^^^ccc]e	chr7:6063696-6063956(-)$1	260	212	243	35.8280
cc!!bb^^^^^^^^^^^^^^^^^^^^^^^bb	chr11:65196891-65197162(+)$1	271	102	133	36.4090
!dddd^^^^^^^^^^^^^^^^^^^^^^dddd	chr12:122692451-122692779(-)$1	328	62	93	36.6166
[dddd^^^^^^^^^^^^^^^^^^^^^^dddd	chr11:87033647-87033930(+)$1	283	64	95	36.6169
FFdddd^^^^^^^^^^^^^^^^^^^^dddd:	chr1:21299429-21299689(-)$1	260	68	99	33.5704
gggg^^^^^^^^^^^^^^^^^^^^^^^^^^g	chr1:111494573-111494866(-)$1	293	143	174	37.9469
ggggg^^^^^^^^^^^^^^^^^^^^^^gggg	chr17:27586110-27586354(-)$1	244	65	96	36.7108
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^	chr3:152182856-152183102(+)$1	246	119	150	36.9815
c[ccc^^^^^^^^^^^^^^^^^^^^^^^^cc	chr3:155633754-155634064(+)$1	310	171	202	37.6659
eedddd^^^^^^^^^^^^^^^^^^^^dddd]	chr1:205684184-205684452(-)$1	268	77	108	35.1702
fffff^^^^^^^^^^^^^^^^^^^^^fffff	chr18:55268282-55268552(-)$1	270	216	247	35.2493
ddd^^^^^^^^^^^^^^^^^^^^^^^^^^dd	chr5:118877713-118878081(+)$1	368	159	190	37.4421
b[dddd^^^^^^^^^^^^^^^^^^dddd]bb	chr19:6441568-6441844(-)$1	276	69	100	31.3200
fff^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr7:77256763-77257002(+)$1	239	80	111	36.9937
c"""dddd^^^^^^^^^^^^^^^^^^dddd2	chrX:16779388-16779669(+)$1	281	90	121	31.9086
fffff^^^^^^^^^^^^^^^^^^^^^fffff	chr8:90926320-90926541(+)$1	221	37	68	35.2493
ccc^^^^^^^^^^^^^^^^^^^^^^^ccc:e	chr7:138730274-138730543(-)$1	269	35	66	35.2819
fffff^^^^^^^^^^^^^^^^^^^^^^^fff	chr4:38691284-38691554(+)$1	270	148	179	36.7150
==!!bb^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:111441984-111442230(+)$1	246	185	216	37.3915
ddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr8:101721588-101721816(-)$1	228	56	87	37.9096
cc[ccc^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:53776587-53776847(+)$1	260	109	140	37.7089
ddd^^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr16:68225279-68225519(+)$1	240	130	161	37.1815
[ffffff^^^^^^^^^^^^^^^^^^ffffff	chr19:35649200-35649404(+)$1	204	126	157	31.7597
======^^^^^^^^^^^^^^^^^^^^^====	chr5:162871574-162871803(+)$1	229	192	223	36.7110
iiiiii^^^^^^^^^^^^^^^^^^^^^iiii	chr8:105502490-105502755(-)$1	265	157	188	36.1042
$$$ccc^^^^^^^^^^^^^^^^^^^^^^ccc	chr17:40353397-40353664(-)$1	267	93	124	36.3211
dd[ccc^^^^^^^^^^^^^^^^^^^^^ccc]	chr10:75881958-75882216(-)$1	258	112	143	36.6901
dd[dddd^^^^^^^^^^^^^^^^^^^ddddd	chr3:23930528-23930766(+)$1	238	130	161	33.6614
ggg[bb^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:6505679-6505937(-)$1	258	61	92	37.2650
ggdddd^^^^^^^^^^^^^^^^^^^^^dddd	chr1:47746689-47746944(-)$1	255	109	140	36.0882
dd[ccc^^^^^^^^^^^^^^^^^^^ccc]dd	chr4:177251452-177251689(+)$1	237	187	218	34.4365
ggggg^^^^^^^^^^^^^^^^^^^^^ggggg	chr15:45009963-45010241(+)$1	278	178	209	35.8374
$$$ccc^^^^^^^^^^^^^^^^^^^^^ccc6	chr4:48424980-48425232(+)$1	252	86	117	35.7352
ffffff^^^^^^^^^^^^^^^^^^ffffff3	chr7:138239584-138239811(+)$1	227	110	141	31.6845
da[ccc^^^^^^^^^^^^^^^^^^^^ccc]a	chr12:111158660-111158922(-)$1	262	79	110	35.9185
dddd^^^^^^^^^^^^^^^^^^^^^^dddd:	chr1:90400751-90401088(+)$1	337	0	31	35.1193
!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:135208275-135208585(+)$1	310	89	120	38.1549
$$dddd^^^^^^^^^^^^^^^^^^^^dddd5	chr17:46940494-46940778(+)$1	284	193	224	34.2613
dddd^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr1:204373599-204373852(-)$1	253	57	88	37.2100
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr10:5827035-5827289(-)$1	254	67	98	38.1710
!!a[bb^^^^^^^^^^^^^^^^^^^bba22e	chr12:72176269-72176540(+)$1	271	95	126	33.4487
ddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr8:101721629-101721863(-)$1	234	103	134	37.9096
:dddd^^^^^^^^^^^^^^^^^^^^^^dddd	chr3:150177379-150177672(+)$1	293	13	44	35.4998
ffffff^^^^^^^^^^^^^^^^^^^^fffff	chr20:18529152-18529476(+)$1	324	222	253	34.6765
!!dddd^^^^^^^^^^^^^^^^^^^^dddd2	chr6:53133560-53133831(-)$1	271	30	61	35.2969
dddd^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr15:96880923-96881212(+)$1	289	78	109	37.2100
ee[ccc^^^^^^^^^^^^^^^^^^^^ccc]e	chr7:6063565-6063837(-)$1	272	93	124	35.8280
!eeeee^^^^^^^^^^^^^^^^^^^^eeeee	chrX:20169333-20169610(-)$1	277	206	237	35.0351
ffff^^^^^^^^^^^^^^^^^^^^^^^^fff	chr8:59494698-59494930(+)$1	232	24	55	36.9905
c!!ccc^^^^^^^^^^^^^^^^^^^^^^^^^	chr6:30593179-30593441(+)$1	262	7	38	37.7854
gggggg^^^^^^^^^^^^^^^^^^^^ggggg	chr3:150261996-150262233(-)$1	237	97	128	35.3140
eeee^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:6879009-6879264(+)$1	255	115	146	37.8531

#otherMatches

#Seq PSSM
CUUGUUAUCUUCCAUUCUCACAAACUGUCUU	chr15:42450920-42451236(-)$1	316	100	131	37.9096
UCAGGAAGGUAAGGAAAUAGUAAAAUACUGA	chr17:34147235-34147542(+)$1	307	198	229	36.7119
UUGUUUAGACCACUGCUAAUCCCUUAAAAAC	chr15:41573462-41573728(+)$1	266	22	53	36.7110
UAACAGACAACAUUUUUCCCCGCUUAGUUUG	chr4:73950865-73951112(-)$1	247	88	119	31.9194
UAACUUCCAUCAAAUCUACCACACUAAGAGU	chr12:110760709-110760978(+)$1	269	117	148	36.1042
AAUGACUUUCCUAUCAUGCUUCAUGUGUCAU	chr3:150262033-150262311(-)$1	278	175	206	35.3140
UCUUGCGAAAAGAUUUUAUUACAUGGUAAGU	chr9:5809929-5810287(-)$1	358	252	283	33.6436
UCAGGGUUUUCCAUUUCUUCCUCCAUAUCCU	chr8:17132275-17132567(+)$1	292	5	36	33.5156
AACCUUUUCCCCUCUACUCUUGUCUAAAAGU	chr3:156258653-156258884(-)$1	231	192	223	33.1991
ACUUUGUUCCCAAAUCCAACCAACAUAAUCA	chr6:12120800-12121071(+)$1	271	93	124	37.6964
UGCCAUUCAUAAUCAUCAAUACAAGCAGAAA	chr3:141682552-141682809(-)$1	257	92	123	36.1228
UUUCUGAAGAAGACAUCUGACCCUAGCAGGU	chr16:23582881-23583128(+)$1	247	154	185	35.2969
CUAAAUAUAGCAAACACUUCAUCAGAUAUUA	chr12:24965344-24965611(-)$1	267	111	142	37.6324
UUUCUCUCAUCUCAAUUGCUCUCCCAGAAAA	chrX:53574739-53574999(-)$1	260	99	130	32.5235
CUUAGGUCUCAAAUAUUCUGUCAAACCCUAA	chr22:22116420-22116679(-)$1	259	30	61	33.9183
GGGCAGAGCCAAUUGCCCAAUUUCUACCCUA	chr6:30644677-30644932(-)$1	255	37	68	37.2837
UGGAAACACACAUUAAAAUAUUUCAUGCUCC	chr20:49510728-49510976(-)$1	248	87	118	36.9905
CCACCCCGuuuuuuuuuuuuuuuuuuuuuuu	chr11:117039103-117039382(+)$1	279	51	82	37.9096
AUAUAUCAUUCGCCUCUAUAACAAUUUAAUG	chr17:8377848-8378146(-)$1	298	185	216	37.1660
UGCUUUGUAAUCUACUGUCCAGCUGAAAGCA	chr3:10342707-10342996(-)$1	289	219	250	33.1528
UUAGCGUCAUUCCAAAACCACACCCUUGCAA	chr7:6063696-6063956(-)$1	260	212	243	35.8280
auuuucuaauuccuagucauuuuucuauuga	chr11:65196891-65197162(+)$1	271	102	133	36.4090
CCUGUUUAACAUUUCACCCCACUCUGUACAG	chr12:122692451-122692779(-)$1	328	62	93	36.6166
AAUUAUAACCCAUACUUUAAAAAUGCUUAAU	chr11:87033647-87033930(+)$1	283	64	95	36.6169
UGCCUAUUUAAUUUUUUCCAACUUUUUAGGA	chr1:21299429-21299689(-)$1	260	68	99	33.5704
AAUACUAAAUACCACACAAAUUCCAAAGAAU	chr1:111494573-111494866(-)$1	293	143	174	37.9469
ACUAACUACAAACAUUUAUUUUCCAAUUUAG	chr17:27586110-27586354(-)$1	244	65	96	36.7108
AUGUUUAAAACUUCAACAAAAAAAGAGAGAA	chr3:152182856-152183102(+)$1	246	119	150	36.9815
AACUCAUCAAAACCCAUCACAAUGACACAGA	chr3:155633754-155634064(+)$1	310	171	202	37.6659
GUUCAAUCCUCAUUUUAAUACUUAAUUUGGU	chr1:205684184-205684452(-)$1	268	77	108	35.1702
AGUUAUUAAUCUUUUCUAACUCUGCUUAGCU	chr18:55268282-55268552(-)$1	270	216	247	35.2493
GGAACUAUAUAUAAGCUAGCACAUAAUUAUC	chr5:118877713-118878081(+)$1	368	159	190	37.4421
GCGAUCCCCACCCUUCAGCCACUAGAUCCCA	chr19:6441568-6441844(-)$1	276	69	100	31.3200
UGUGACCCAGAAUAAAACUAAUAUUUCAACA	chr7:77256763-77257002(+)$1	239	80	111	36.9937
CCUUCAGAAGCCCAUUCCCCUUAAAGUCUGU	chrX:16779388-16779669(+)$1	281	90	121	31.9086
UAUUUAUCAUCAGAAGCAAUACACCCAAAUA	chr8:90926320-90926541(+)$1	221	37	68	35.2493
GUCCAACUCUUuccaacagcccauuagacac	chr7:138730274-138730543(-)$1	269	35	66	35.2819
UAUUAUCCUGAAGAAAUGUCACCCCCCUUAA	chr4:38691284-38691554(+)$1	270	148	179	36.7150
UCCAGCCUCUAAAUAAUGCCCAGUCUUCUCC	chr1:111441984-111442230(+)$1	246	185	216	37.3915
CUGUUCCCAACCCUGUAAUCAACCCCUACCA	chr8:101721588-101721816(-)$1	228	56	87	37.9096
CAAUGCCAAUAGCUACUCAACUACUACUACC	chr12:53776587-53776847(+)$1	260	109	140	37.7089
GCUUCAGCCUAUGCCUUACCAAUCUCCUAGC	chr16:68225279-68225519(+)$1	240	130	161	37.1815
CGGGGACAGGACCAAGACAAACAAAGUUUCC	chr19:35649200-35649404(+)$1	204	126	157	31.7597
AUGAUGGCUAUAUCCAAUUUGACAUCACGUU	chr5:162871574-162871803(+)$1	229	192	223	36.7110
UUUGAUUGUCAUUUUUAUCUAUCCUAUGUUA	chr8:105502490-105502755(-)$1	265	157	188	36.1042
gugugugugugugugugugugugugugugcg	chr17:40353397-40353664(-)$1	267	93	124	36.3211
CUCAGCUUAUAACCGUCUUUCCCUUAUGCUA	chr10:75881958-75882216(-)$1	258	112	143	36.6901
CUUGGACAUAUUGAAAGAUAAUUGGAGUCCA	chr3:23930528-23930766(+)$1	238	130	161	33.6614
GCCGAGACCAUCACCACCCACUACCUGUUCU	chr7:6505679-6505937(-)$1	258	61	92	37.2650
AUGGCAAUUUCAUAGAAUCAAACCCUCUGCC	chr1:47746689-47746944(-)$1	255	109	140	36.0882
UUUGGUGAGGAAGAUAAGUAAAAAUGCCCAA	chr4:177251452-177251689(+)$1	237	187	218	34.4365
UCCAAUUUACAUACUCUGCUUAGAAUUUGGG	chr15:45009963-45010241(+)$1	278	178	209	35.8374
GAGGGGGAAAAAAAUCUAUGCACUUAACCUA	chr4:48424980-48425232(+)$1	252	86	117	35.7352
CUUCCAUCUCUCAUCAGGUAAAUUUGGAAGC	chr7:138239584-138239811(+)$1	227	110	141	31.6845
UAGAGUAUAUAACCUUCAUUUUUAAGACUGU	chr12:111158660-111158922(-)$1	262	79	110	35.9185
GAGUCACUUUAUUUCUCUAACAACAAGCUCG	chr1:90400751-90401088(+)$1	337	0	31	35.1193
gugugugugugugugugugugugugugugug	chr2:135208275-135208585(+)$1	310	89	120	38.1549
UAAGUGAUUAGUUUUCCAAGUUGUCCCACUG	chr17:46940494-46940778(+)$1	284	193	224	34.2613
CAGGGUUACUACCUCAGUUUACAAUCUACCU	chr1:204373599-204373852(-)$1	253	57	88	37.2100
CGUGUUAUGAAACCAUUAAUAGAAUUAAACU	chr10:5827035-5827289(-)$1	254	67	98	38.1710
GGGAGCAAAACAUUAUCAUACUUCAGCCAAA	chr12:72176269-72176540(+)$1	271	95	126	33.4487
CUGUUCCCAACCCUGUAAUCAACCCCUACCA	chr8:101721629-101721863(-)$1	234	103	134	37.9096
UGCACAUUCUUUAUGUAUUUUUAUUUAGUGU	chr3:150177379-150177672(+)$1	293	13	44	35.4998
GCCCAUUCUCUACUCUUACUCCUUUCAUGGG	chr20:18529152-18529476(+)$1	324	222	253	34.6765
ACUUCUUUCAUCAAUUCAAAACCCCUAGAAA	chr6:53133560-53133831(-)$1	271	30	61	35.2969
UUCAAAAAAAAAAAAAAAGACUGUCAAAUGA	chr15:96880923-96881212(+)$1	289	78	109	37.2100
UUAGCGUCAUUCCAAAACCACACCCUUGCAA	chr7:6063565-6063837(-)$1	272	93	124	35.8280
UGUGGUAUUCAACAGAGCCACACUUAACCAC	chrX:20169333-20169610(-)$1	277	206	237	35.0351
GAAUGAUUGCCUUUGAUUUUUUUUUUAAAUU	chr8:59494698-59494930(+)$1	232	24	55	36.9905
ACUGGUCCUUCCCUUUAUAAUCCUUUUUCUU	chr6:30593179-30593441(+)$1	262	7	38	37.7854
AAUGACUUUCCUAUCAUGCUUCAUGUGUCAU	chr3:150261996-150262233(-)$1	237	97	128	35.3140
ugccgaggauggagaggaggaagaugaaggg	chr12:6879009-6879264(+)$1	255	115	146	37.8531

#DB
(((............................	chr15:42450920-42451236(-)$1	1	100	131	37.9096
((((.......................))))	chr17:34147235-34147542(+)$1	1	198	229	36.7119
((((((.....................))))	chr15:41573462-41573728(+)$1	1	22	53	36.7110
((((((((..................)))))	chr4:73950865-73951112(-)$1	1	88	119	31.9194
((((((.....................))))	chr12:110760709-110760978(+)$1	1	117	148	36.1042
((((((....................)))))	chr3:150262033-150262311(-)$1	1	175	206	35.3140
.(((((...................))))).	chr9:5809929-5810287(-)$1	1	252	283	33.6436
(.(((((...................)))))	chr8:17132275-17132567(+)$1	1	5	36	33.5156
(((.(((..................))).))	chr3:156258653-156258884(-)$1	1	192	223	33.1991
((((((.........................	chr6:12120800-12121071(+)$1	1	93	124	37.6964
(((.(((........................	chr3:141682552-141682809(-)$1	1	92	123	36.1228
..((((....................)))).	chr16:23582881-23583128(+)$1	1	154	185	35.2969
((.(((.........................	chr12:24965344-24965611(-)$1	1	111	142	37.6324
((....((..................))...	chrX:53574739-53574999(-)$1	1	99	130	32.5235
.(((((....................)))))	chr22:22116420-22116679(-)$1	1	30	61	33.9183
((((...........................	chr6:30644677-30644932(-)$1	1	37	68	37.2837
((((........................)))	chr20:49510728-49510976(-)$1	1	87	118	36.9905
(((............................	chr11:117039103-117039382(+)$1	1	51	82	37.9096
((((((......................)))	chr17:8377848-8378146(-)$1	1	185	216	37.1660
((((((...................))))))	chr3:10342707-10342996(-)$1	1	219	250	33.1528
((.(((....................))).)	chr7:6063696-6063956(-)$1	1	212	243	35.8280
((..((.......................))	chr11:65196891-65197162(+)$1	1	102	133	36.4090
.((((......................))))	chr12:122692451-122692779(-)$1	1	62	93	36.6166
.((((......................))))	chr11:87033647-87033930(+)$1	1	64	95	36.6169
((((((....................)))).	chr1:21299429-21299689(-)$1	1	68	99	33.5704
((((..........................)	chr1:111494573-111494866(-)$1	1	143	174	37.9469
(((((......................))))	chr17:27586110-27586354(-)$1	1	65	96	36.7108
((((((.........................	chr3:152182856-152183102(+)$1	1	119	150	36.9815
(.(((........................))	chr3:155633754-155634064(+)$1	1	171	202	37.6659
((((((....................)))).	chr1:205684184-205684452(-)$1	1	77	108	35.1702
(((((.....................)))))	chr18:55268282-55268552(-)$1	1	216	247	35.2493
(((..........................))	chr5:118877713-118878081(+)$1	1	159	190	37.4421
(.((((..................)))).))	chr19:6441568-6441844(-)$1	1	69	100	31.3200
(((.........................)))	chr7:77256763-77257002(+)$1	1	80	111	36.9937
(...((((..................)))).	chrX:16779388-16779669(+)$1	1	90	121	31.9086
(((((.....................)))))	chr8:90926320-90926541(+)$1	1	37	68	35.2493
(((.......................))).(	chr7:138730274-138730543(-)$1	1	35	66	35.2819
(((((.......................)))	chr4:38691284-38691554(+)$1	1	148	179	36.7150
((..((.........................	chr1:111441984-111442230(+)$1	1	185	216	37.3915
(((............................	chr8:101721588-101721816(-)$1	1	56	87	37.9096
((.(((.........................	chr12:53776587-53776847(+)$1	1	109	140	37.7089
(((.........................)))	chr16:68225279-68225519(+)$1	1	130	161	37.1815
.((((((..................))))))	chr19:35649200-35649404(+)$1	1	126	157	31.7597
((((((.....................))))	chr5:162871574-162871803(+)$1	1	192	223	36.7110
((((((.....................))))	chr8:105502490-105502755(-)$1	1	157	188	36.1042
...(((......................)))	chr17:40353397-40353664(-)$1	1	93	124	36.3211
((.(((.....................))).	chr10:75881958-75882216(-)$1	1	112	143	36.6901
((.((((...................)))))	chr3:23930528-23930766(+)$1	1	130	161	33.6614
(((.((.........................	chr7:6505679-6505937(-)$1	1	61	92	37.2650
))((((.....................))))	chr1:47746689-47746944(-)$1	1	109	140	36.0882
((.(((...................))).))	chr4:177251452-177251689(+)$1	1	187	218	34.4365
(((((.....................)))))	chr15:45009963-45010241(+)$1	1	178	209	35.8374
...(((.....................))).	chr4:48424980-48425232(+)$1	1	86	117	35.7352
((((((..................)))))).	chr7:138239584-138239811(+)$1	1	110	141	31.6845
((.(((....................))).)	chr12:111158660-111158922(-)$1	1	79	110	35.9185
((((......................)))).	chr1:90400751-90401088(+)$1	1	0	31	35.1193
..(((..........................	chr2:135208275-135208585(+)$1	1	89	120	38.1549
..((((....................)))).	chr17:46940494-46940778(+)$1	1	193	224	34.2613
((((........................)))	chr1:204373599-204373852(-)$1	1	57	88	37.2100
.(((...........................	chr10:5827035-5827289(-)$1	1	67	98	38.1710
..(.((...................)))..)	chr12:72176269-72176540(+)$1	1	95	126	33.4487
(((............................	chr8:101721629-101721863(-)$1	1	103	134	37.9096
.((((......................))))	chr3:150177379-150177672(+)$1	1	13	44	35.4998
((((((....................)))))	chr20:18529152-18529476(+)$1	1	222	253	34.6765
..((((....................)))).	chr6:53133560-53133831(-)$1	1	30	61	35.2969
((((........................)))	chr15:96880923-96881212(+)$1	1	78	109	37.2100
((.(((....................))).)	chr7:6063565-6063837(-)$1	1	93	124	35.8280
.(((((....................)))))	chrX:20169333-20169610(-)$1	1	206	237	35.0351
((((........................)))	chr8:59494698-59494930(+)$1	1	24	55	36.9905
(..(((.........................	chr6:30593179-30593441(+)$1	1	7	38	37.7854
((((((....................)))))	chr3:150261996-150262233(-)$1	1	97	128	35.3140
((((...........................	chr12:6879009-6879264(+)$1	1	115	146	37.8531

#PSSM
d : 0.20	f : 0.16	g : 0.11	! : 0.08	c : 0.08	= : 0.06	e : 0.06	[ : 0.05	i : 0.04	$ : 0.04	: : 0.02	h : 0.01	F : 0.01	b : 0.01	
d : 0.23	f : 0.16	g : 0.11	e : 0.11	= : 0.06	! : 0.06	c : 0.05	i : 0.04	[ : 0.04	$ : 0.04	h : 0.01	F : 0.01	" : 0.01	a : 0.01	
d : 0.27	f : 0.15	[ : 0.11	g : 0.09	e : 0.08	= : 0.05	c : 0.05	i : 0.04	! : 0.04	$ : 0.02	# : 0.01	h : 0.01	" : 0.01	a : 0.01	
d : 0.20	c : 0.18	f : 0.13	^ : 0.11	g : 0.06	e : 0.06	= : 0.05	[ : 0.05	i : 0.04	! : 0.02	# : 0.01	h : 0.01	" : 0.01	
^ : 0.25	c : 0.19	d : 0.16	f : 0.11	= : 0.05	g : 0.05	e : 0.05	b : 0.05	i : 0.04	# : 0.01	
^ : 0.38	c : 0.16	d : 0.12	f : 0.06	= : 0.05	e : 0.05	b : 0.05	i : 0.04	g : 0.02	# : 0.01	
^ : 0.88	c : 0.02	d : 0.02	i : 0.01	e : 0.01	b : 0.01	f : 0.01	
^ : 0.95	i : 0.01	b : 0.01	d : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.97	d : 0.01	f : 0.01	
^ : 0.88	f : 0.04	c : 0.02	e : 0.01	d : 0.01	b : 0.01	
^ : 0.56	d : 0.12	c : 0.08	f : 0.08	e : 0.05	g : 0.04	b : 0.02	i : 0.01	
^ : 0.40	d : 0.19	c : 0.11	f : 0.08	g : 0.05	e : 0.05	i : 0.04	= : 0.02	b : 0.01	a : 0.01	
^ : 0.27	d : 0.22	f : 0.13	c : 0.09	g : 0.05	e : 0.05	= : 0.04	i : 0.04	] : 0.04	4 : 0.01	2 : 0.01	
d : 0.25	^ : 0.23	f : 0.13	g : 0.06	e : 0.05	c : 0.05	= : 0.04	i : 0.04	] : 0.04	b : 0.02	4 : 0.01	: : 0.01	2 : 0.01	
^ : 0.22	d : 0.15	f : 0.12	e : 0.09	g : 0.08	= : 0.04	i : 0.04	] : 0.04	2 : 0.04	b : 0.02	: : 0.02	c : 0.02	4 : 0.01	6 : 0.01	3 : 0.01	a : 0.01	5 : 0.01	

#score	2578.5694173332217
#seq	72
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_UTR_m1_run2.txt

#BEAR
iiiiiiiii!!cccmmmmccc22iiiiiiii	chr11:62303843-62304111(-)$1	268	121	152	12.4547
eccc!!gggggggooooooggggggg22ccc	chr6:43752403-43752644(+)$1	241	192	223	14.9449
e"""cccffffffooooooffffff]ccc]e	chr16:70696394-70696632(-)$1	238	187	218	13.0995
:==========[aooooooa==========:	chr13:77780771-77781048(-)$1	277	241	272	16.5853
dd####bb[ddddoooooodddd22bb]ddd	chr9:116997778-116997986(+)$1	208	147	178	12.7589
eee####bb!!bboooooobb22bbeeeee]	chr9:117044465-117044701(+)$1	236	147	178	12.7920
=========="""ccclllccc=========	chr16:2648175-2648419(+)$1	244	142	173	13.7841
cc[dddd[ccc[aooooooa]cccdddd]cc	chr9:117044696-117044912(+)$1	216	55	86	13.7536
###==========oooooo==========44	chr16:24834652-24834908(+)$1	256	209	240	18.0800
=========[cccooooooccc=========	chr7:5661494-5661769(-)$1	275	126	157	18.5526
hhhffffff[cccooooooccc]ffffff33	chr3:184105616-184105837(+)$1	221	43	74	13.8310
ff[bb[ccc!!bboooooobb22cccbbfff	chr9:116999195-116999407(+)$1	212	103	134	12.8048
gggg[ccc!!cccooooooccc]ccc]gggg	chr12:62860567-62860833(+)$1	266	72	103	16.3434
eeddddbb!!cccooooooccc22bb]dddd	chr17:3512874-3513116(-)$1	242	166	197	13.2537
gggg[ddddddddoooooodddd333dddd]	chr17:3513187-3513421(-)$1	234	179	210	13.8669
iiiiiiii"""cccnnnnnccc]iiiiiiii	chr20:61598955-61599213(+)$1	258	81	112	13.3990
=============oooooo============	chr19:16990037-16990281(+)$1	244	11	42	18.8004
hhh[a!!ccc!!aooooooa22ccc22a]hh	chr16:70696077-70696334(-)$1	257	124	155	13.4822
ffff[dddd[cccooooooccc]ddddffff	chr10:70101634-70101936(+)$1	302	232	263	13.2997
ffff!!cccddddoooooodddd4444ccc2	chr3:132360716-132361049(-)$1	333	227	258	14.0344
cciiiiiiiii[aooooooa]iiiiiiiii]	chr15:34818996-34819248(-)$1	252	169	200	17.3397
eeeeeagggggggooooooggggggg]a]ee	chr17:55162519-55162831(+)$1	312	43	74	14.5890
========!!bb[ammmmabb]=========	chr9:139099580-139099851(-)$1	271	26	57	13.2001
==========vvvvvvvvvvvvv========	chr3:42680416-42680729(+)$1	313	44	75	11.4087
===####ffffffooooooffffff======	chr7:99638080-99638326(+)$1	246	94	125	14.8733
'============oooooo============	chr17:16118575-16118885(-)$1	310	237	268	18.0345
ggggiiiiiiiiiooooooiiiiiiiii:gg	chr2:43779267-43779580(-)$1	313	261	292	15.9641
eeeee[cccacccooooooccc333a]ccc]	chr15:65619996-65620250(-)$1	254	58	89	15.5026
e!!ccc"""ddddoooooodddd333cccee	chr4:151936524-151936784(-)$1	260	149	180	14.8073
ccc[ggggggg[cccmmmmccc]ggggggg]	chr9:140342613-140342939(-)$1	326	139	170	11.4286
ee[bb[==========lll==========bb	chr9:117031466-117031670(+)$1	204	100	131	13.0440
:ffffff"""cccooooooccc333ffffff	chr2:8928681-8928964(-)$1	283	84	115	13.7585
ee:===========nnnnn===========:	chr15:43012638-43012873(+)$1	235	197	228	12.1611
bb[eeeee[bb[aooooooa]bb]eeeee33	chrX:153586547-153586783(-)$1	236	4	35	12.5185
ccc[===========mmmm===========]	chr9:117053049-117053291(+)$1	242	20	51	14.0217
gggg[eeeeecccooooooccc]eeeeeggg	chr4:1809189-1809413(+)$1	224	134	165	14.5607
"""dddd####bboooooobb4444ddddbb	chr17:78518752-78519054(+)$1	302	200	231	12.7968
e[ccc!!a[ddddoooooodddd]accc]ee	chr1:154600230-154600499(-)$1	269	61	92	14.4414
==[ccc[ccc[bboooooobbcccccc]===	chr16:87363414-87363667(-)$1	253	32	63	14.9151
ggggggg[acccooooooccc22a]gggggg	chr16:30959276-30959510(+)$1	234	43	74	14.2196
==============mmmm=============	chr16:2138717-2138950(-)$1	233	51	82	14.4347
ddd!!ccc[ddddoooooodddd]ccc22dd	chr9:84303527-84303781(-)$1	254	67	98	13.4102
""a[iiiiiiiiiooooooiiiiiiiii]a3	chr3:44487385-44487641(-)$1	256	144	175	17.0733
HHH==========oooooo==========::	chr9:140343507-140343802(-)$1	295	42	73	14.1335
ii===========oooooo===========:	chr13:76055760-76056056(-)$1	296	78	109	17.7454
ccc[ggggggg[aooooooaggggggg]ccc	chr19:10802754-10803041(+)$1	287	65	96	15.6535
iiiiiiii[ddddoooooodddd4444iiii	chr2:118676692-118676973(-)$1	281	9	40	16.0208
ffff####eeeeeooooooeeeeeffffff]	chr3:49050515-49050772(+)$1	257	10	41	12.8310
ggggggg!!ddddoooooodddd]ggggggg	chr2:219553331-219553586(+)$1	255	178	209	15.3212
dddd!!gggggggooooooggggggg]dddd	chr17:73483912-73484131(+)$1	219	60	91	14.4058
""dddd"""ddddoooooodddd333dddd3	chr3:42679746-42679970(+)$1	224	174	205	13.8750
[iiiiiiiiicccooooooccc]iiiiiiii	chr2:234378385-234378628(+)$1	243	145	176	17.6646
dd[ffffff[cccooooooccc]ffffffdd	chr17:617853-618151(-)$1	298	246	277	13.7797
eee!!bb[eeeeeooooooeeeee]bbeeee	chr17:1657688-1657953(+)$1	265	121	152	12.3154

#otherMatches

#Seq PSSM
AGGGGCGGGCUCCUGGCAAGGCAUUCGCUCC	chr11:62303843-62304111(-)$1	268	121	152	12.4547
GGAAGAUUAGAGAGUUUUAUUUCUGGGAUUC	chr6:43752403-43752644(+)$1	241	192	223	14.9449
GUCUGCUGUGGUCUGAGCUGGCUGCAAGCCC	chr16:70696394-70696632(-)$1	238	187	218	13.0995
UGCAGCUUUGCACAUUUUAGGUAGGGUUGCG	chr13:77780771-77781048(-)$1	277	241	272	16.5853
AGACAAGGUAAUUGCAUGAGAUUUUCCCCUC	chr9:116997778-116997986(+)$1	208	147	178	12.7589
AGGUGUCCCCUUCUGACUUGAUAGGCCUGCG	chr9:117044465-117044701(+)$1	236	147	178	12.7920
UGAUGGGCCCUUAGGCCUGGCUGGGCCCAUU	chr16:2648175-2648419(+)$1	244	142	173	13.7841
CAAGGACAGCUGGGUGAGAUGGGCGUCCCUG	chr9:117044696-117044912(+)$1	216	55	86	13.7536
CUCGGGUCCAGCCAGAGCCGGCUGGGCUCCC	chr16:24834652-24834908(+)$1	256	209	240	18.0800
UUUCUGGGGGAGGAGUGGGCCUCCUUAGGGA	chr7:5661494-5661769(-)$1	275	126	157	18.5526
GUGGGCAGGAGGCUUAUGUGCCCCCUGCCUG	chr3:184105616-184105837(+)$1	221	43	74	13.8310
GAAGCCAGGGCCUCUGGUAAGUACCUGCUCC	chr9:116999195-116999407(+)$1	212	103	134	12.8048
CUGGGGAGCUGGCGCUGAAGCUUCUUGCCAG	chr12:62860567-62860833(+)$1	266	72	103	16.3434
GGGCAGGUAGUUUAUUCAAAGAGAACUCUGU	chr17:3512874-3513116(-)$1	242	166	197	13.2537
GCUGUGUGCCGGCCUUCUUGCUGCAUGUACU	chr17:3513187-3513421(-)$1	234	179	210	13.8669
GGUCCAGACCAGGCUCGCUGCUCUCUGGGCC	chr20:61598955-61599213(+)$1	258	81	112	13.3990
UUGGGCAUCAGCUCUGCCUGGCUGGUGUUCA	chr19:16990037-16990281(+)$1	244	11	42	18.8004
CUGGUGGCCCCGCAGGUCAGGAGGGAAAGCA	chr16:70696077-70696334(-)$1	257	124	155	13.4822
CUUACAGAUUUAAUUUCUUUUGUAUUUUAAG	chr10:70101634-70101936(+)$1	302	232	263	13.2997
AAGACAGGUAAUGCAUCCACAUUAAUAGCUA	chr3:132360716-132361049(-)$1	333	227	258	14.0344
UGGGCUCAUGAAGAUAUUGCAUCGUGAGCUG	chr15:34818996-34819248(-)$1	252	169	200	17.3397
GGCGGGGCCUGCGUCGCGCUGCGGGCACGUC	chr17:55162519-55162831(+)$1	312	43	74	14.5890
GGGUUGGAAGGAUGGGGGCUCAUUUAACCCU	chr9:139099580-139099851(-)$1	271	26	57	13.2001
CUCAGUAUUUCUCCCACAGCUUUAAAUACUG	chr3:42680416-42680729(+)$1	313	44	75	11.4087
UUUUAAGUUCCUUUGGUCCAGGGAAGGGUCC	chr7:99638080-99638326(+)$1	246	94	125	14.8733
CGGCCUCCGGGCUCCUGCUAGUCCGGGGGCU	chr17:16118575-16118885(-)$1	310	237	268	18.0345
CUGUCUCAGAAAUCCAUUCAUUUCUGAGCUU	chr2:43779267-43779580(-)$1	313	261	292	15.9641
GCCCGGCCCCUGGAAUGUACCAUGUGUGGGA	chr15:65619996-65620250(-)$1	254	58	89	15.5026
GCUGCGACCAGGUGCACUGACCUCUCUGUCC	chr4:151936524-151936784(-)$1	260	149	180	14.8073
GCAGAGCCAGGGGUCUGAGGGCACCUGGCUG	chr9:140342613-140342939(-)$1	326	139	170	11.4286
GGCAACGGGUAAGUUGAAGCAAUUUAUUCUU	chr9:117031466-117031670(+)$1	204	100	131	13.0440
ACUAGAUUGGCAAGACAUAUUGGAUAUUUGG	chr2:8928681-8928964(-)$1	283	84	115	13.7585
UGGUAGGGGUGGGAGAGAUUCUCAUCUUUAG	chr15:43012638-43012873(+)$1	235	197	228	12.1611
GCCCAGGCUGGAUGCUGAGAACCUGUCUGAC	chrX:153586547-153586783(-)$1	236	4	35	12.5185
UCUGCCUGCUUUCUUAACAGGGGGAGCAGGG	chr9:117053049-117053291(+)$1	242	20	51	14.0217
AGGGAGCUGGGCCCGACAUGGCUCCGGCCUC	chr4:1809189-1809413(+)$1	224	134	165	14.5607
CAGGGCCCUUUGAACCCGAUCCCUUGGCCGG	chr17:78518752-78519054(+)$1	302	200	231	12.7968
CGACUGAAGGUAGAGAAGGCUACGUGGUGGG	chr1:154600230-154600499(-)$1	269	61	92	14.4414
GGCUGCUCCAAGUCCUUGUGCUGGGCACCCU	chr16:87363414-87363667(-)$1	253	32	63	14.9151
AAUACUUGAACAUUCAUCUGUACUGAAGUGU	chr16:30959276-30959510(+)$1	234	43	74	14.2196
GUGUGUGUGUGUGUGUGCGCGCGCGCACGCG	chr16:2138717-2138950(-)$1	233	51	82	14.4347
CGAAUCUUGCGGGAGUCGCCCCGAAAGCGUC	chr9:84303527-84303781(-)$1	254	67	98	13.4102
CAGGAUGCUGGGCUCAAGCGCUUGGCGUGUG	chr3:44487385-44487641(-)$1	256	144	175	17.0733
UGUGUGGCUCCGGUCUCGCCUGGAGCCACUU	chr9:140343507-140343802(-)$1	295	42	73	14.1335
CGGCGCCUUCUGCGCGGGAGUGGGGGGCGCG	chr13:76055760-76056056(-)$1	296	78	109	17.7454
CCAACCUUGCUUGUGUAGUCAGCAGGGCUGG	chr19:10802754-10803041(+)$1	287	65	96	15.6535
gcauuugagcccuaucuaaagggagaaucgg	chr2:118676692-118676973(-)$1	281	9	40	16.0208
CCAGACCAGGUCUGCUCAAGGACCCUGGGGU	chr3:49050515-49050772(+)$1	257	10	41	12.8310
GCCUUGUAUUCCUUCUGCCGGGAGGCAGGGC	chr2:219553331-219553586(+)$1	255	178	209	15.3212
GUGGCUGAGAGGGUUGUUUCCCUCUUUCCAU	chr17:73483912-73484131(+)$1	219	60	91	14.4058
AAGGAAGAAGGUGAGGCCACAUCCGAUUCUG	chr3:42679746-42679970(+)$1	224	174	205	13.8750
CCCCCAGCCAGUUCUCAGAAACGUGGCUGGG	chr2:234378385-234378628(+)$1	243	145	176	17.6646
CGUGCUGCAGCUCACGCCCGAGGUGCAGCUG	chr17:617853-618151(-)$1	298	246	277	13.7797
GUUUGGCAGCCCCAAGUGAGGGGCCGUGGCU	chr17:1657688-1657953(+)$1	265	121	152	12.3154

#DB
(((((((((..(((....)))..))))))))	chr11:62303843-62304111(-)$1	1	121	152	12.4547
)(((..(((((((......)))))))..)))	chr6:43752403-43752644(+)$1	1	192	223	14.9449
(...(((((((((......)))))).))).)	chr16:70696394-70696632(-)$1	1	187	218	13.0995
.((((((((((.(......))))))))))).	chr13:77780771-77781048(-)$1	1	241	272	16.5853
((....((.((((......))))..)).)))	chr9:116997778-116997986(+)$1	1	147	178	12.7589
(((....((..((......))..))))))).	chr9:117044465-117044701(+)$1	1	147	178	12.7920
((((((((((...(((...))))))))))))	chr16:2648175-2648419(+)$1	1	142	173	13.7841
((.((((.(((.(......).))))))).))	chr9:117044696-117044912(+)$1	1	55	86	13.7536
...((((((((((......))))))))))..	chr16:24834652-24834908(+)$1	1	209	240	18.0800
(((((((((.(((......))))))))))))	chr7:5661494-5661769(-)$1	1	126	157	18.5526
(((((((((.(((......))).))))))..	chr3:184105616-184105837(+)$1	1	43	74	13.8310
((.((.(((..((......))..))))))))	chr9:116999195-116999407(+)$1	1	103	134	12.8048
((((.(((..(((......))).))).))))	chr12:62860567-62860833(+)$1	1	72	103	16.3434
((((((((..(((......)))..)).))))	chr17:3512874-3513116(-)$1	1	166	197	13.2537
((((.((((((((......))))...)))).	chr17:3513187-3513421(-)$1	1	179	210	13.8669
((((((((...(((.....))).))))))))	chr20:61598955-61599213(+)$1	1	81	112	13.3990
(((((((((((((......))))))))))))	chr19:16990037-16990281(+)$1	1	11	42	18.8004
(((.(..(((..(......)..)))..).))	chr16:70696077-70696334(-)$1	1	124	155	13.4822
((((.((((.(((......))).))))))))	chr10:70101634-70101936(+)$1	1	232	263	13.2997
((((..(((((((......))))....))).	chr3:132360716-132361049(-)$1	1	227	258	14.0344
(((((((((((.(......).))))))))).	chr15:34818996-34819248(-)$1	1	169	200	17.3397
(((((((((((((......))))))).).))	chr17:55162519-55162831(+)$1	1	43	74	14.5890
((((((((..((.(....))).)))))))))	chr9:139099580-139099851(-)$1	1	26	57	13.2001
((((((((((.............))))))))	chr3:42680416-42680729(+)$1	1	44	75	11.4087
(((....((((((......))))))))))))	chr7:99638080-99638326(+)$1	1	94	125	14.8733
.((((((((((((......))))))))))))	chr17:16118575-16118885(-)$1	1	237	268	18.0345
))))(((((((((......))))))))).((	chr2:43779267-43779580(-)$1	1	261	292	15.9641
(((((.(((((((......)))...).))).	chr15:65619996-65620250(-)$1	1	58	89	15.5026
(..(((...((((......))))...)))))	chr4:151936524-151936784(-)$1	1	149	180	14.8073
(((.(((((((.(((....))).))))))).	chr9:140342613-140342939(-)$1	1	139	170	11.4286
((.((.((((((((((...))))))))))))	chr9:117031466-117031670(+)$1	1	100	131	13.0440
.((((((...(((......)))...))))))	chr2:8928681-8928964(-)$1	1	84	115	13.7585
)).(((((((((((.....))))))))))).	chr15:43012638-43012873(+)$1	1	197	228	12.1611
((.(((((.((.(......).)).)))))..	chrX:153586547-153586783(-)$1	1	4	35	12.5185
(((.(((((((((((....))))))))))).	chr9:117053049-117053291(+)$1	1	20	51	14.0217
((((.((((((((......))).))))))))	chr4:1809189-1809413(+)$1	1	134	165	14.5607
...((((....((......))....))))))	chr17:78518752-78519054(+)$1	1	200	231	12.7968
(.(((..(.((((......)))).)))).))	chr1:154600230-154600499(-)$1	1	61	92	14.4414
((.(((.(((.((......)))))))).)))	chr16:87363414-87363667(-)$1	1	32	63	14.9151
(((((((.((((......)))..).))))))	chr16:30959276-30959510(+)$1	1	43	74	14.2196
((((((((((((((....)))))))))))))	chr16:2138717-2138950(-)$1	1	51	82	14.4347
(((..(((.((((......)))).)))..))	chr9:84303527-84303781(-)$1	1	67	98	13.4102
..(.(((((((((......))))))))).).	chr3:44487385-44487641(-)$1	1	144	175	17.0733
(((((((((((((......))))))))))..	chr9:140343507-140343802(-)$1	1	42	73	14.1335
))(((((((((((......))))))))))).	chr13:76055760-76056056(-)$1	1	78	109	17.7454
(((.(((((((.(......)))))))).)))	chr19:10802754-10803041(+)$1	1	65	96	15.6535
((((((((.((((......))))....))))	chr2:118676692-118676973(-)$1	1	9	40	16.0208
((((....(((((......))))))))))).	chr3:49050515-49050772(+)$1	1	10	41	12.8310
(((((((..((((......)))).)))))))	chr2:219553331-219553586(+)$1	1	178	209	15.3212
((((..(((((((......))))))).))))	chr17:73483912-73484131(+)$1	1	60	91	14.4058
..((((...((((......))))...)))).	chr3:42679746-42679970(+)$1	1	174	205	13.8750
.((((((((((((......))).))))))))	chr2:234378385-234378628(+)$1	1	145	176	17.6646
((.((((((.(((......))).))))))))	chr17:617853-618151(-)$1	1	246	277	13.7797
(((..((.(((((......))))).))))))	chr17:1657688-1657953(+)$1	1	121	152	12.3154

#PSSM
e : 0.20	= : 0.14	g : 0.11	c : 0.09	i : 0.07	d : 0.07	f : 0.07	" : 0.05	: : 0.03	h : 0.03	# : 0.01	' : 0.01	b : 0.01	H : 0.01	[ : 0.01	
= : 0.18	e : 0.12	c : 0.11	g : 0.11	i : 0.09	f : 0.09	" : 0.07	d : 0.07	h : 0.03	# : 0.01	! : 0.01	b : 0.01	[ : 0.01	H : 0.01	
= : 0.18	[ : 0.11	g : 0.11	i : 0.09	c : 0.09	e : 0.07	d : 0.07	f : 0.07	" : 0.03	# : 0.03	h : 0.03	! : 0.01	: : 0.01	a : 0.01	H : 0.01	
= : 0.22	f : 0.11	g : 0.11	i : 0.09	d : 0.09	[ : 0.09	c : 0.07	# : 0.05	e : 0.05	b : 0.03	! : 0.03	" : 0.01	
= : 0.24	i : 0.12	! : 0.09	c : 0.07	# : 0.07	d : 0.07	[ : 0.07	g : 0.07	f : 0.05	e : 0.05	b : 0.03	a : 0.01	
= : 0.24	i : 0.12	d : 0.11	! : 0.09	c : 0.09	# : 0.07	g : 0.07	f : 0.05	[ : 0.05	e : 0.03	a : 0.01	b : 0.01	
= : 0.25	i : 0.12	g : 0.12	c : 0.11	d : 0.07	b : 0.05	# : 0.05	f : 0.05	! : 0.03	" : 0.03	e : 0.03	[ : 0.01	
= : 0.25	i : 0.12	c : 0.12	g : 0.09	f : 0.07	b : 0.05	[ : 0.05	" : 0.05	d : 0.03	e : 0.03	# : 0.03	a : 0.01	! : 0.01	
= : 0.24	c : 0.11	i : 0.09	g : 0.09	[ : 0.09	f : 0.07	! : 0.07	" : 0.07	e : 0.05	d : 0.03	b : 0.01	# : 0.01	a : 0.01	
= : 0.22	d : 0.16	! : 0.11	g : 0.09	c : 0.07	[ : 0.07	i : 0.07	e : 0.05	f : 0.03	" : 0.03	a : 0.01	b : 0.01	# : 0.01	
c : 0.22	= : 0.18	d : 0.16	g : 0.09	! : 0.07	i : 0.05	f : 0.03	" : 0.03	b : 0.03	e : 0.03	v : 0.01	# : 0.01	[ : 0.01	
c : 0.24	d : 0.16	= : 0.16	[ : 0.11	b : 0.09	g : 0.05	f : 0.03	i : 0.03	e : 0.03	" : 0.01	! : 0.01	v : 0.01	
c : 0.24	d : 0.16	= : 0.16	a : 0.11	b : 0.07	g : 0.05	f : 0.03	i : 0.03	e : 0.03	" : 0.01	[ : 0.01	v : 0.01	o : 0.01	
o : 0.81	c : 0.07	= : 0.07	a : 0.01	v : 0.01	
o : 0.81	m : 0.05	c : 0.03	n : 0.03	= : 0.03	v : 0.01	
o : 0.81	m : 0.09	n : 0.03	c : 0.01	v : 0.01	= : 0.01	
o : 0.81	m : 0.09	l : 0.03	n : 0.03	v : 0.01	
o : 0.81	m : 0.09	l : 0.03	n : 0.03	v : 0.01	
o : 0.79	c : 0.03	l : 0.03	n : 0.03	m : 0.03	a : 0.01	v : 0.01	= : 0.01	
c : 0.27	d : 0.16	= : 0.16	a : 0.11	b : 0.09	g : 0.05	f : 0.03	i : 0.03	e : 0.03	v : 0.01	
c : 0.27	= : 0.18	d : 0.16	b : 0.09	g : 0.07	] : 0.05	f : 0.03	i : 0.03	e : 0.03	2 : 0.01	v : 0.01	
c : 0.27	= : 0.18	d : 0.16	2 : 0.09	g : 0.07	i : 0.05	f : 0.03	e : 0.03	] : 0.01	v : 0.01	b : 0.01	4 : 0.01	
= : 0.24	d : 0.16	] : 0.14	2 : 0.09	g : 0.07	c : 0.05	i : 0.05	f : 0.03	3 : 0.03	e : 0.03	v : 0.01	b : 0.01	4 : 0.01	
= : 0.25	i : 0.11	g : 0.09	c : 0.09	3 : 0.09	f : 0.07	] : 0.07	4 : 0.05	e : 0.05	2 : 0.03	b : 0.01	d : 0.01	a : 0.01	
= : 0.25	i : 0.11	g : 0.11	f : 0.09	c : 0.09	3 : 0.09	4 : 0.05	b : 0.03	d : 0.03	e : 0.03	] : 0.03	2 : 0.01	a : 0.01	
= : 0.27	g : 0.12	i : 0.11	c : 0.09	f : 0.07	b : 0.05	e : 0.05	d : 0.05	3 : 0.05	4 : 0.03	] : 0.01	2 : 0.01	a : 0.01	
= : 0.27	i : 0.11	c : 0.09	d : 0.09	] : 0.09	f : 0.07	g : 0.07	b : 0.05	e : 0.05	2 : 0.03	4 : 0.03	
= : 0.27	i : 0.12	d : 0.11	c : 0.09	f : 0.09	e : 0.07	g : 0.07	] : 0.05	2 : 0.03	a : 0.03	b : 0.01	
= : 0.29	c : 0.11	d : 0.11	f : 0.11	i : 0.09	] : 0.09	g : 0.09	e : 0.05	: : 0.01	2 : 0.01	
= : 0.24	d : 0.12	g : 0.11	i : 0.09	c : 0.09	e : 0.09	f : 0.07	3 : 0.03	b : 0.03	] : 0.01	4 : 0.01	h : 0.01	a : 0.01	: : 0.01	
= : 0.16	] : 0.12	e : 0.09	d : 0.09	g : 0.09	i : 0.07	: : 0.07	3 : 0.07	c : 0.05	f : 0.05	b : 0.03	4 : 0.01	h : 0.01	2 : 0.01	

#score	782.1731398830019
#seq	54
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF975HKC_PABPN1_CDS_m1_run1.txt

#BEAR
fffff[dddd!!cccmmmmcccdddd333ffffff]	chr14:24114274-24114511(+)$1	237	60	96	12.5529
iiiiii[bb"""cccmmmmccc333bbiiiiiiiii	chr1:1228812-1229074(-)$1	262	133	169	15.1288
""aeeeeeccccccnnnnnccc]ccc]eeeee]a33	chr17:34863131-34863418(-)$1	287	84	120	11.7784
dd[ccc[ccc!!cccmmmmccc22ccc]ccc]dddd	chr9:117027107-117027324(+)$1	217	137	173	14.7384
ggg[bb"""ccccccmmmmccc]cccbbggggggg]	chrM:9784-9990(+)$1	206	159	195	14.1082
dd[ccccccccc[bbmmmmbb]ccc]ccc333ccc]	chr19:50390904-50391184(+)$1	280	220	256	13.3202
[bb!!cccbb"""bbmmmmbb333bb]ccc22bb22	chr6:31499074-31499282(-)$1	208	123	159	13.1315
bb"""a[bb"""cccmmmmccc333bb]a333bb]e	chr16:1816672-1816904(+)$1	232	54	90	15.4557
::ccc!!ccc!!cccmmmmccc22ccc333ccc:ee	chr17:7127916-7128126(+)$1	210	34	70	12.8359
cc####dddd!!cccmmmmcccdddd333ccc::dd	chr20:55051940-55052279(+)$1	339	122	158	12.8018
ggg$$$$$a[cccooooooccc]aggggggg]a===	chr8:145618883-145619109(-)$1	226	127	163	13.8133
""aggggggg"""bbmmmmbb333ggggggg]a444	chr20:62326350-62326627(+)$1	277	166	202	14.3396
iiiiiiiii####bbmmmmbb4444iiiiiiiiigg	chr19:50042300-50042535(+)$1	235	88	124	14.3692
==========a!!bbmmmmbb22a]==========h	chr16:1813598-1813877(+)$1	279	163	199	14.9831
ccc[ffffff!!a[ammmma]a]ffffff]ccc]ff	chr7:2419010-2419254(+)$1	244	142	178	11.8626
$$$$$dddd[ccc[aooooooa]ccc22ddddhhhh	chr16:28855210-28855466(-)$1	256	37	73	11.0915
dd!!ffffff!!cccmmmmccc4444ffffff]ddd	chr1:18023650-18023925(+)$1	275	79	115	12.6857
==!!bb"""ffffffmmmmffffff333bb4444==	chr19:11327806-11328105(-)$1	299	152	188	12.7458
iiiiiiiiieeeeeooooooeeeee333iiiiiiii	chr19:48258913-48259192(+)$1	279	232	268	11.9092
!dddd[a[ccccccmmmmccc333ccc]adddd333	chr16:89804894-89805217(-)$1	323	115	151	13.2968
ggg"""ccc!!fffffflllffffff22ccc333gg	chr19:50387815-50388080(+)$1	265	31	67	10.9465
======!!ddddoooooodddd]==========]bb	chr15:75650943-75651210(-)$1	267	112	148	12.0477
eeee!!gggggggooooooggggggg22eeeee]a:	chr17:55194127-55194389(+)$1	262	24	60	11.1255
eeeeeeeee"""cccmmmmccc333eeeee22eeee	chr1:52263832-52264148(-)$1	316	96	132	12.5511
dd####bb[ddddccclllccc]ddddbb333dddd	chr16:89972528-89972792(+)$1	264	144	180	11.2613
iii$$$$$ccc[cccmmmmcccccciiiiiiiii::	chr3:184105069-184105319(+)$1	250	45	81	13.4138
dd"""==========nnnnn==========4444dd	chr3:49720173-49720475(+)$1	302	52	88	13.2701
gggg####bb[ddddmmmmdddd]bb22ggggggg]	chr21:46912500-46912704(+)$1	204	40	76	12.5869
dd[a[==========mmmm==========]a333dd	chr19:7709447-7709736(+)$1	289	112	148	15.0446
ggg"""a[ccc[cccmmmmccc]ccc22a333gggg	chr22:50878329-50878563(+)$1	234	90	126	17.4737
[bb!!dddd[a[cccmmmmccc]adddd4444bb]b	chr4:187209623-187209934(+)$1	311	40	76	13.6485
ddd[a"""gggggggmmmmggggggg22a]dddd::	chr20:61458522-61458732(+)$1	210	49	85	11.5640
!!cccbb[bb[ddddmmmmdddd]bb]bb333cccd	chr14:24031663-24031903(-)$1	240	147	183	11.1401
ee####cccbb[bboooooobb]bb]ccc4444eee	chr17:37818969-37819338(+)$1	369	137	173	12.4998
iiiiiii[ddddooooooddddiiiiiiiii4444f	chr20:61471878-61472111(+)$1	233	90	126	11.2293
=========bb[cccoooooocccbb]=========	chrX:54957104-54957454(+)$1	350	169	205	13.9848
eeeee[==========lll==========333eeee	chr3:49753280-49753542(+)$1	262	129	165	13.2009
bb!!a"""gggggggmmmmggggggg333a22bb33	chr14:24031402-24031623(-)$1	221	124	160	14.3510
ccc!!cccccc[bboooooobb]ccc22ccc4444c	chr1:1230770-1231002(-)$1	232	95	131	14.3932
cca[a"""ccc!!bbmmmmbb22ccc333a]a]ccc	chr15:75648143-75648413(-)$1	270	126	162	15.6238
===========[cccmmmmccc22===========8	chr3:184102298-184102562(+)$1	264	57	93	16.2055
ccc!!ddddccc[ccclllccc]ccc22dddd22cc	chr1:1430766-1431095(+)$1	329	241	277	12.6316
ccdddd[bb[cccooooooccc]bb]dddd]ccc]b	chr19:3959357-3959622(-)$1	265	224	260	11.1111
eeee!!a[ccc!!ammmma22ccc]a22eeeee22b	chr9:117063496-117063699(+)$1	203	68	104	11.6561
d[a!!ccc!!bboooooobb333ccc22a]dddd]c	chr20:60887673-60887909(-)$1	236	146	182	11.8027
"""dddd[ccc[cccmmmmccc]ccc]ddddcccBB	chr20:61458018-61458226(+)$1	208	105	141	12.5370
!a[dddd[ccccccnnnnnccc]ccc4444dddd]a	chr20:33866895-33867110(-)$1	215	60	96	12.5478
e!!ccc!!ccc[cccmmmmccc]ccc]ccceeeee]	chr8:144919151-144919437(-)$1	286	217	253	15.2730
ff!!eeeee[cccbbmmmmbb4444ccc]eeeee33	chr5:176885557-176885809(-)$1	252	173	209	12.5049
::==========cccmmmmccc333==========:	chr14:74440479-74440763(-)$1	284	229	265	13.9436
b!!a!!dddd[cccnnnnnccc]dddd22a22bb]a	chr16:89836480-89836759(-)$1	279	141	177	11.6420
iiiiiii!!bb[bboooooobb]bb22iiiiiiiii	chr21:45744680-45744900(+)$1	220	105	141	12.7510
c!!ccc[ccc!!cccmmmmccc22ccc]ccc]ccc]	chr19:15491226-15491462(-)$1	236	147	183	15.6989
ffff####ccc!!aooooooa22ccc333ffffff]	chr19:42407375-42407653(+)$1	278	67	103	13.7155

#otherMatches

#Seq PSSM
UCCUUCUUCCAUCCAGGAUUGGGGAGUCAGAGGACU	chr14:24114274-24114511(+)$1	237	60	96	12.5529
CCGGGCAGGCCGGGCAGCUGCCACCCCGCCCGGCCC	chr1:1228812-1229074(-)$1	262	133	169	15.1288
GGGCCUGGAGUGGUCAUUCAUCAACUACCAGGACAA	chr17:34863131-34863418(-)$1	287	84	120	11.7784
GCAGGUAUGUCAGGCCAAGGCCAAGCAGGCCAGCUG	chr9:117027107-117027324(+)$1	217	137	173	14.7384
AUGUGGUUUGACUAUUUCUGUAUGUCUCCAUCUAUU	chrM:9784-9990(+)$1	206	159	195	14.1082
CCUGAGCUGGGCGCUGCCCAGGGCCGCAGUACCUCC	chr19:50390904-50391184(+)$1	280	220	256	13.3202
GCAGCGGUGCAUUGCCUUGGCCCAGCUACUAGUGGA	chr6:31499074-31499282(-)$1	208	123	159	13.1315
CUAUGUGCACUCGGCUGUGGCCAACUGGAAGAAGUG	chr16:1816672-1816904(+)$1	232	54	90	15.4557
UACCGGACAGAUGAACAGUUUCUGCUGCAGCGGCUG	chr17:7127916-7128126(+)$1	210	34	70	12.8359
CUGAUAAUCCUGCCUGGGAAGGGGAUAAAGGAAACA	chr20:55051940-55052279(+)$1	339	122	158	12.8018
CUGCCCAUGCAGGAGAAGACCUACCGGCGGCUGCUG	chr8:145618883-145619109(-)$1	226	127	163	13.8133
CCCCAGGAGGAGAGGCUUGCCGUGCCUCCUGUGCUU	chr20:62326350-62326627(+)$1	277	166	202	14.3396
ACCUGGACAGAAACAAAGAUGGCUAUGUCCAGGUGG	chr19:50042300-50042535(+)$1	235	88	124	14.3692
GCCUGCCCGCCAAGUACAAGCAGGUGCgggcgggcg	chr16:1813598-1813877(+)$1	279	163	199	14.9831
GUCUGCAGGGGGCGCGAUGGGGGUCCUGUUGGCUGC	chr7:2419010-2419254(+)$1	244	142	178	11.8626
GUCCUAGGCAUUGAGAUGUUCCACAAGAGCCUGGAG	chr16:28855210-28855466(-)$1	256	37	73	11.0915
GCAAGGAGAUUUGCUCUGUGGCCAUCAUCUCCGGCG	chr1:18023650-18023925(+)$1	275	79	115	12.6857
CCCUAGCCCCUGGCUCCCGGGCCAGCAUCUCCCAGG	chr19:11327806-11328105(-)$1	299	152	188	12.7458
CCCAGGGGCUAUGGGCGACACCAUGGCUGCCCCUGG	chr19:48258913-48259192(+)$1	279	232	268	11.9092
UGGGGACUGCGACCCAGAGGUGAGCGCCGCCCUCCA	chr16:89804894-89805217(-)$1	323	115	151	13.2968
CCUAUCGAGCGAUCAGGUGUCCUGGUACCUCACGGG	chr19:50387815-50388080(+)$1	265	31	67	10.9465
UGUCCCCUUGUACUGGGAUGCAUGGGACGUCAUGGA	chr15:75650943-75651210(-)$1	267	112	148	12.0477
UGAAUACUGGCUUGGAGUGGAGUCAGCCUUCAUGUC	chr17:55194127-55194389(+)$1	262	24	60	11.1255
CGUUGGUCUAUGAUUGACAAGUACCAGGCUUUGAUG	chr1:52263832-52264148(-)$1	316	96	132	12.5511
CCGUCGCUGCCCUGCCCCCGGUAAGGGAGAAAGGCU	chr16:89972528-89972792(+)$1	264	144	180	11.2613
AGCUGAUGAGCUCAUACUAAUGGCUGCUGGGCCCUG	chr3:184105069-184105319(+)$1	250	45	81	13.4138
GCCCCGUAGCCCCAGAAUUCCUGGGGCUGCAACAGC	chr3:49720173-49720475(+)$1	302	52	88	13.2701
GGUCCGGGCAGGCGCGAGGGUGCGUGAUGACCCCAG	chr21:46912500-46912704(+)$1	204	40	76	12.5869
GUUCCGGUGCUGCUGGACGCGGCGGUGCCCGCCUAC	chr19:7709447-7709736(+)$1	289	112	148	15.0446
GGUGGACACAGAAUGCAGCCAUGCUGAGGGCAGCCG	chr22:50878329-50878563(+)$1	234	90	126	17.4737
AUCACGAGCUGGGGCGAAGGCUGUGCUCAAAGGGAG	chr4:187209623-187209934(+)$1	311	40	76	13.6485
GCCCCACCUCAUCCUUUCCAGGGUGACCGAGGCGAG	chr20:61458522-61458732(+)$1	210	49	85	11.5640
ACCUCCUGCUGGCAGGGAACUGCGAGGAGAUUGAGC	chr14:24031663-24031903(-)$1	240	147	183	11.1401
UGAAUUUGCCUUUCACCUGCGACAGCGCAUCAGCGA	chr17:37818969-37819338(+)$1	369	137	173	12.4998
CUGGGCUUCCAGGUGCCAUUGGGGCCCAGGGGACAC	chr20:61471878-61472111(+)$1	233	90	126	11.2293
ACUGGUGUUGGCUUCUGCAGUGGACCAAGCACCAGU	chrX:54957104-54957454(+)$1	350	169	205	13.9848
UACCUCUGAGAUGCUGCUGCGGCGUCUUGCACAGGU	chr3:49753280-49753542(+)$1	262	129	165	13.2009
CAAGUAAGAAGGGGUCCCAGCCCCUUGAGAGAUGGC	chr14:24031402-24031623(-)$1	221	124	160	14.3510
GAGACUCCCUCUUCUGUCCCGACGAGCUGGACUCGC	chr1:1230770-1231002(-)$1	232	95	131	14.3932
UGCUGUCCCUGUUGCUCGUGCUUCAGCCUCCGCCAC	chr15:75648143-75648413(-)$1	270	126	162	15.6238
GAGGGGCUCAUAUGCUGCUGCAGAAUGAGCUCUUCC	chr3:184102298-184102562(+)$1	264	57	93	16.2055
CGGAGUCCAAGGCGAGACCCUCACCUCAUGGAGCCU	chr1:1430766-1431095(+)$1	329	241	277	12.6316
CUGGCCGCCAUCUACGAGGAGAAGGAGGCCUGGUAC	chr19:3959357-3959622(-)$1	265	224	260	11.1111
GUCCGAAGGGUGACAAAGGCAGCCGUGGGGACUGGG	chr9:117063496-117063699(+)$1	203	68	104	11.6561
UGGAGCAGGACAAUGAUCUGGAGCUGGCCGACGCCU	chr20:60887673-60887909(-)$1	236	146	182	11.8027
CAUUGGGUUCCGAGGGCCGCCUGGGAUCCCAGGAGC	chr20:61458018-61458226(+)$1	208	105	141	12.5370
UGUGAAACAGCUACUGACCGUGCGCUUUCCUUUCUC	chr20:33866895-33867110(-)$1	215	60	96	12.5478
GACCAGAAAGGUGAGUCCCCUCUCCUGCUGCUCAGU	chr8:144919151-144919437(-)$1	286	217	253	15.2730
CCAUGGAGGAGCCCCCUCAGGCACAGGCGCCUCCCC	chr5:176885557-176885809(-)$1	252	173	209	12.5049
GCUCUGGAAAAGUCCCAUGGGAAACUUUUUCCAGAA	chr14:74440479-74440763(-)$1	284	229	265	13.9436
CUCCCUGCAGUGCUCACCCGGCUCUGCCAGCUGCUC	chr16:89836480-89836759(-)$1	279	141	177	11.6420
GGGCCUGGUGCUGCGGUGAGGCUGCCGUGGGUCCCU	chr21:45744680-45744900(+)$1	220	105	141	12.7510
UCCGGGCCUGCCCUGUCCCCAGCUUAGUCCCCGCCU	chr19:15491226-15491462(-)$1	236	147	183	15.6989
UCCCUUGCCUGCAGAAGAGCCCACAGAACGGGAGAA	chr19:42407375-42407653(+)$1	278	67	103	13.7155

#DB
(((((.((((..(((....)))))))...)))))).	chr14:24114274-24114511(+)$1	1	60	96	12.5529
((((((.((...(((....)))...)))))))))))	chr1:1228812-1229074(-)$1	1	133	169	15.1288
..((((((((((((.....))).))).))))).)..	chr17:34863131-34863418(-)$1	1	84	120	11.7784
((.(((.(((..(((....)))..))).))).))))	chr9:117027107-117027324(+)$1	1	137	173	14.7384
(((.((...((((((....))).)))))))))))).	chrM:9784-9990(+)$1	1	159	195	14.1082
((.(((((((((.((....)).))).)))...))).	chr19:50390904-50391184(+)$1	1	220	256	13.3202
.((..(((((...((....))...)).)))..))..	chr6:31499074-31499282(-)$1	1	123	159	13.1315
((...(.((...(((....)))...)).)...)).)	chr16:1816672-1816904(+)$1	1	54	90	15.4557
..(((..(((..(((....)))..)))...))).((	chr17:7127916-7128126(+)$1	1	34	70	12.8359
((....((((..(((....)))))))...)))..((	chr20:55051940-55052279(+)$1	1	122	158	12.8018
(((.....(.(((......))).)))))))).))))	chr8:145618883-145619109(-)$1	1	127	163	13.8133
..((((((((...((....))...))))))).)...	chr20:62326350-62326627(+)$1	1	166	202	14.3396
(((((((((....((....))....)))))))))((	chr19:50042300-50042535(+)$1	1	88	124	14.3692
(((((((((((..((....))..).)))))))))))	chr16:1813598-1813877(+)$1	1	163	199	14.9831
(((.((((((..(.(....).).)))))).))).))	chr7:2419010-2419254(+)$1	1	142	178	11.8626
.....((((.(((.(......).)))..))))))))	chr16:28855210-28855466(-)$1	1	37	73	11.0915
((..((((((..(((....)))....)))))).)))	chr1:18023650-18023925(+)$1	1	79	115	12.6857
((..((...((((((....))))))...))....))	chr19:11327806-11328105(-)$1	1	152	188	12.7458
((((((((((((((......)))))...))))))))	chr19:48258913-48259192(+)$1	1	232	268	11.9092
.((((.(.((((((....)))...))).)))))...	chr16:89804894-89805217(-)$1	1	115	151	13.2968
(((...(((..((((((...))))))..)))...))	chr19:50387815-50388080(+)$1	1	31	67	10.9465
((((((..((((......)))).)))))))))).))	chr15:75650943-75651210(-)$1	1	112	148	12.0477
((((..(((((((......)))))))..))))).).	chr17:55194127-55194389(+)$1	1	24	60	11.1255
(((((((((...(((....)))...)))))..))))	chr1:52263832-52264148(-)$1	1	96	132	12.5511
((....((.(((((((...))).))))))...))))	chr16:89972528-89972792(+)$1	1	144	180	11.2613
(((.....(((.(((....)))))))))))))))..	chr3:184105069-184105319(+)$1	1	45	81	13.4138
((...((((((((((.....))))))))))....))	chr3:49720173-49720475(+)$1	1	52	88	13.2701
((((....((.((((....)))).))..))))))).	chr21:46912500-46912704(+)$1	1	40	76	12.5869
((.(.((((((((((....)))))))))).)...))	chr19:7709447-7709736(+)$1	1	112	148	15.0446
(((...(.(((.(((....))).)))..)...))))	chr22:50878329-50878563(+)$1	1	90	126	17.4737
.((..((((.(.(((....))).)))))....)).)	chr4:187209623-187209934(+)$1	1	40	76	13.6485
(((.(...(((((((....)))))))..).))))..	chr20:61458522-61458732(+)$1	1	49	85	11.5640
..(((((.((.((((....)))).)).))...))))	chr14:24031663-24031903(-)$1	1	147	183	11.1401
((....(((((.((......)).)).)))....)))	chr17:37818969-37819338(+)$1	1	137	173	12.4998
(((((((.((((......)))))))))))))....)	chr20:61471878-61472111(+)$1	1	90	126	11.2293
(((((((((((.(((......))))).)))))))))	chrX:54957104-54957454(+)$1	1	169	205	13.9848
(((((.((((((((((...))))))))))...))))	chr3:49753280-49753542(+)$1	1	129	165	13.2009
((..(...(((((((....)))))))...)..))..	chr14:24031402-24031623(-)$1	1	124	160	14.3510
(((..((((((.((......)).)))..)))....)	chr1:1230770-1231002(-)$1	1	95	131	14.3932
(((.(...(((..((....))..)))...).).)))	chr15:75648143-75648413(-)$1	1	126	162	15.6238
(((((((((((.(((....)))..))))))))))).	chr3:184102298-184102562(+)$1	1	57	93	16.2055
(((..(((((((.(((...))).)))..))))..))	chr1:1430766-1431095(+)$1	1	241	277	12.6316
((((((.((.(((......))).)).)))).))).)	chr19:3959357-3959622(-)$1	1	224	260	11.1111
((((..(.(((..(....)..))).)..)))))..)	chr9:117063496-117063699(+)$1	1	68	104	11.6561
(.(..(((..((......))...)))..).)))).)	chr20:60887673-60887909(-)$1	1	146	182	11.8027
...((((.(((.(((....))).))).)))))))))	chr20:61458018-61458226(+)$1	1	105	141	12.5370
.(.((((.((((((.....))).)))....)))).)	chr20:33866895-33867110(-)$1	1	60	96	12.5478
(..(((..(((.(((....))).))).)))))))).	chr8:144919151-144919437(-)$1	1	217	253	15.2730
((..(((((.(((((....))....))).)))))..	chr5:176885557-176885809(-)$1	1	173	209	12.5049
..(((((((((((((....)))...)))))))))).	chr14:74440479-74440763(-)$1	1	229	265	13.9436
(..(..((((.(((.....))).))))..)..)).)	chr16:89836480-89836759(-)$1	1	141	177	11.6420
(((((((..((.((......)).))..)))))))))	chr21:45744680-45744900(+)$1	1	105	141	12.7510
(..(((.(((..(((....)))..))).))).))).	chr19:15491226-15491462(-)$1	1	147	183	15.6989
((((....(((..(......)..)))...)))))).	chr19:42407375-42407653(+)$1	1	67	103	13.7155

#PSSM
d : 0.14	c : 0.12	i : 0.11	e : 0.11	g : 0.09	= : 0.09	f : 0.05	" : 0.05	b : 0.05	! : 0.05	[ : 0.03	: : 0.03	$ : 0.01	
d : 0.14	i : 0.11	c : 0.11	g : 0.09	= : 0.09	e : 0.09	b : 0.07	! : 0.07	f : 0.05	" : 0.05	: : 0.03	$ : 0.01	[ : 0.01	a : 0.01	
! : 0.12	i : 0.11	g : 0.09	c : 0.09	= : 0.09	a : 0.07	[ : 0.07	e : 0.07	" : 0.05	# : 0.05	d : 0.05	f : 0.03	b : 0.03	$ : 0.01	
! : 0.16	c : 0.11	i : 0.09	e : 0.09	= : 0.09	[ : 0.07	" : 0.07	d : 0.07	# : 0.05	$ : 0.05	f : 0.03	g : 0.03	a : 0.03	
! : 0.14	c : 0.11	i : 0.09	# : 0.09	= : 0.09	e : 0.07	" : 0.07	d : 0.07	f : 0.05	$ : 0.05	a : 0.05	b : 0.03	g : 0.01	[ : 0.01	
c : 0.12	= : 0.12	d : 0.11	i : 0.09	# : 0.09	" : 0.09	! : 0.07	[ : 0.05	e : 0.05	b : 0.05	$ : 0.03	f : 0.03	a : 0.01	g : 0.01	
d : 0.14	= : 0.12	c : 0.11	[ : 0.09	" : 0.09	i : 0.07	e : 0.05	! : 0.05	a : 0.05	$ : 0.03	g : 0.03	f : 0.03	b : 0.03	# : 0.03	
c : 0.16	= : 0.12	[ : 0.12	d : 0.11	" : 0.09	b : 0.07	e : 0.05	! : 0.05	$ : 0.03	g : 0.03	i : 0.03	f : 0.03	# : 0.03	
c : 0.31	d : 0.14	= : 0.12	b : 0.11	g : 0.07	" : 0.03	i : 0.03	f : 0.03	e : 0.03	! : 0.03	a : 0.01	[ : 0.01	
c : 0.31	d : 0.11	b : 0.11	= : 0.11	[ : 0.09	g : 0.07	" : 0.05	f : 0.05	! : 0.03	# : 0.01	e : 0.01	
c : 0.33	! : 0.14	" : 0.09	= : 0.09	b : 0.07	d : 0.05	g : 0.05	[ : 0.05	a : 0.03	# : 0.01	f : 0.01	e : 0.01	
! : 0.20	c : 0.20	[ : 0.18	" : 0.09	d : 0.09	= : 0.07	g : 0.05	f : 0.03	# : 0.01	e : 0.01	b : 0.01	
c : 0.48	! : 0.07	o : 0.05	g : 0.05	d : 0.05	= : 0.05	b : 0.05	[ : 0.03	" : 0.03	f : 0.03	# : 0.01	a : 0.01	e : 0.01	
c : 0.44	b : 0.18	o : 0.11	= : 0.05	[ : 0.03	f : 0.03	d : 0.03	g : 0.03	a : 0.03	e : 0.01	
c : 0.37	o : 0.20	b : 0.12	n : 0.05	= : 0.05	a : 0.03	f : 0.03	m : 0.03	d : 0.03	g : 0.03	
m : 0.61	o : 0.24	n : 0.07	c : 0.03	f : 0.01	= : 0.01	
m : 0.61	o : 0.24	n : 0.07	l : 0.05	f : 0.01	
m : 0.61	o : 0.24	n : 0.07	l : 0.07	
m : 0.57	o : 0.18	n : 0.07	l : 0.07	d : 0.03	c : 0.01	a : 0.01	b : 0.01	
c : 0.46	b : 0.14	o : 0.12	d : 0.07	g : 0.05	= : 0.03	a : 0.01	f : 0.01	l : 0.01	n : 0.01	2 : 0.01	
c : 0.46	b : 0.18	d : 0.07	g : 0.05	= : 0.05	o : 0.03	f : 0.03	] : 0.01	e : 0.01	2 : 0.01	3 : 0.01	a : 0.01	
c : 0.48	3 : 0.07	d : 0.07	2 : 0.05	g : 0.05	= : 0.05	b : 0.05	4 : 0.03	a : 0.03	f : 0.03	] : 0.01	e : 0.01	
] : 0.33	3 : 0.14	2 : 0.12	d : 0.07	c : 0.07	4 : 0.05	g : 0.05	= : 0.05	f : 0.03	e : 0.01	i : 0.01	
c : 0.29	3 : 0.12	d : 0.07	2 : 0.07	= : 0.07	a : 0.05	4 : 0.05	f : 0.05	g : 0.05	b : 0.05	] : 0.03	e : 0.01	i : 0.01	
c : 0.33	b : 0.12	d : 0.09	g : 0.09	= : 0.09	3 : 0.07	4 : 0.05	f : 0.05	] : 0.03	e : 0.01	i : 0.01	
c : 0.31	= : 0.12	b : 0.11	d : 0.09	g : 0.09	] : 0.05	i : 0.05	f : 0.03	3 : 0.03	4 : 0.01	e : 0.01	a : 0.01	2 : 0.01	
2 : 0.20	3 : 0.12	c : 0.12	= : 0.12	] : 0.11	d : 0.07	b : 0.05	i : 0.05	g : 0.03	f : 0.03	e : 0.01	4 : 0.01	
2 : 0.20	3 : 0.14	= : 0.14	i : 0.09	c : 0.09	] : 0.07	b : 0.05	d : 0.05	e : 0.03	g : 0.03	f : 0.03	4 : 0.01	
c : 0.14	= : 0.14	3 : 0.11	i : 0.11	a : 0.09	e : 0.07	g : 0.07	d : 0.07	b : 0.05	f : 0.03	4 : 0.03	] : 0.01	2 : 0.01	
c : 0.12	3 : 0.12	i : 0.11	= : 0.11	e : 0.09	d : 0.09	g : 0.07	] : 0.07	f : 0.05	4 : 0.05	a : 0.05	b : 0.01	
c : 0.12	d : 0.12	i : 0.11	3 : 0.11	e : 0.09	= : 0.09	g : 0.07	2 : 0.07	4 : 0.07	f : 0.05	] : 0.03	a : 0.01	
3 : 0.14	d : 0.11	4 : 0.11	i : 0.09	e : 0.09	c : 0.09	= : 0.09	] : 0.07	2 : 0.07	f : 0.05	g : 0.03	a : 0.01	
c : 0.12	d : 0.11	e : 0.11	i : 0.09	b : 0.09	= : 0.09	4 : 0.09	] : 0.05	g : 0.05	f : 0.03	a : 0.03	3 : 0.03	: : 0.01	h : 0.01	2 : 0.01	
d : 0.11	c : 0.11	i : 0.09	b : 0.09	= : 0.09	4 : 0.09	e : 0.09	g : 0.05	] : 0.05	3 : 0.05	f : 0.03	: : 0.03	2 : 0.03	a : 0.01	h : 0.01	
d : 0.11	] : 0.11	= : 0.11	g : 0.09	c : 0.09	e : 0.09	3 : 0.07	f : 0.05	i : 0.05	4 : 0.05	2 : 0.03	: : 0.03	h : 0.01	b : 0.01	a : 0.01	B : 0.01	
] : 0.12	d : 0.12	e : 0.09	3 : 0.07	b : 0.07	: : 0.07	c : 0.07	i : 0.05	= : 0.05	g : 0.05	h : 0.03	f : 0.03	a : 0.03	2 : 0.01	4 : 0.01	8 : 0.01	B : 0.01	

#score	712.3285462170426
#seq	54
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF036IYW_NSUN2_UTR_m3_run1.txt

#BEAR
::CCCZZZEEEEE::::::HHHHHHHHddddnnnnndddd	chr19:4724531-4724758(-)$1	227	82	122	40.2612
::CCCZZZEEEEE::::::HHHHHHHHddddnnnnndddd	chr19:4724558-4724762(-)$1	204	86	126	40.2612

#otherMatches

#Seq PSSM
agguccccgguucgaucccgggcggaaacaGGUCAGCUGU	chr19:4724531-4724758(-)$1	227	82	122	40.2612
agguccccgguucgaucccgggcggaaacaGGUCAGCUGU	chr19:4724558-4724762(-)$1	204	86	126	40.2612

#DB
..)))...)))))......((((((((((((.....))))	chr19:4724531-4724758(-)$1	1	82	122	40.2612
..)))...)))))......((((((((((((.....))))	chr19:4724558-4724762(-)$1	1	86	126	40.2612

#PSSM
: : 1.00	
: : 1.00	
C : 1.00	
C : 1.00	
C : 1.00	
Z : 1.00	
Z : 1.00	
Z : 1.00	
E : 1.00	
E : 1.00	
E : 1.00	
E : 1.00	
E : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
n : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	

#score	80.52253184119998
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF163SWW_U2AF1_CDS_m2_run2.txt

#BEAR
fffffqqqqqqqqffff	chr5:38967385-38967634(-)$1	249	38	55	12.9432
eeeeeqqqqqqqqeeee	chr2:191523768-191524051(+)$1	283	218	235	14.5707
ddcccqqqqqqqqccc2	chr6:17852143-17852392(-)$1	249	38	55	13.5499
eecccqqqqqqqqccc2	chr10:7247760-7248005(-)$1	245	215	232	13.8617
gggggqqqqqqqqgggg	chr15:69714546-69714793(+)$1	247	226	243	13.5728
eeeeeqqqqqqqqeeee	chr7:1608855-1609102(-)$1	247	4	21	14.5707
[ddddqqqqqqqqdddd	chr1:167984915-167985175(+)$1	260	194	211	13.9582
eeeeeqqqqqqqqeeee	chr6:122772758-122773006(-)$1	248	130	147	14.5707
eee[aqqqqqqqqa]ee	chr1:207512626-207512884(+)$1	258	25	42	14.1381
eeeeeqqqqqqqqeeee	chr1:39796769-39797021(+)$1	252	4	21	14.5707
eeeeeqqqqqqqqeeee	chr12:53415379-53415623(+)$1	244	210	227	14.5707
eeeeeqqqqqqqqeeee	chr17:57917011-57917260(+)$1	249	199	216	14.5707
b[cccqqqqqqqqcccb	chr5:154179025-154179291(+)$1	266	226	243	13.2752
$$cccqqqqqqqqccc4	chrX:54839810-54840078(+)$1	268	219	236	13.4310
ffcccqqqqqqqqccc]	chr12:62777740-62777995(+)$1	255	221	238	13.6898
fffffqqqqqqqqffff	chr3:183705344-183705641(-)$1	297	4	21	12.9432
eeeeeqqqqqqqqeeee	chr8:103282247-103282518(-)$1	271	26	43	14.5707
eeeeeqqqqqqqqeeee	chr4:95494388-95494652(+)$1	264	158	175	14.5707
eeeeeqqqqqqqqeeee	chr6:43487326-43487587(+)$1	261	160	177	14.5707
##cccqqqqqqqqccc3	chr5:89815174-89815407(-)$1	233	129	146	13.8431
eeeeeqqqqqqqqeeee	chr17:62499537-62499773(-)$1	236	38	55	14.5707
##cccqqqqqqqqccc4	chr22:42262724-42262987(+)$1	263	80	97	13.8284
fffffqqqqqqqqffff	chr10:70515027-70515293(+)$1	266	79	96	12.9432
ggg[aqqqqqqqqa]gg	chr1:155883999-155884258(-)$1	259	125	142	13.5352
%ddddqqqqqqqqdddd	chr15:63967182-63967483(-)$1	301	162	179	13.3299
bddddqqqqqqqqdddd	chr3:32568259-32568511(-)$1	252	160	177	13.6003
gggggqqqqqqqqgggg	chr22:22142996-22143211(-)$1	215	122	139	13.5728
[ddddqqqqqqqqdddd	chr16:11862204-11862467(-)$1	263	54	71	13.9582
:ddddqqqqqqqqdddd	chr16:28844032-28844251(+)$1	219	36	53	12.9494
fffffqqqqqqqqffff	chr5:133509309-133509575(-)$1	266	205	222	12.9432
dd!!aqqqqqqqqa22d	chr8:8861472-8861727(+)$1	255	24	41	12.8723
cddddqqqqqqqqdddd	chr7:32914639-32914886(-)$1	247	118	135	13.8327
!ddddqqqqqqqqdddd	chr2:234178535-234178780(+)$1	245	220	237	14.0003
c[cccqqqqqqqqccc]	chr16:23424750-23425035(-)$1	285	72	89	13.9004
c!!bbqqqqqqqqbb44	chr16:84158165-84158428(-)$1	263	170	187	12.5992
eeeeeqqqqqqqqeeee	chr7:152006998-152007286(-)$1	288	46	63	14.5707
!ddddqqqqqqqqdddd	chr1:150595202-150595436(-)$1	234	34	51	14.0003
""cccqqqqqqqqccc]	chr3:9516640-9516895(+)$1	255	132	149	13.9111
eeeeeqqqqqqqqeeee	chr6:158330827-158331077(+)$1	250	182	199	14.5707
gggggqqqqqqqqgggg	chr15:40477665-40477876(+)$1	211	99	116	13.5728
#ddddqqqqqqqqdddd	chr7:50663079-50663343(-)$1	264	181	198	13.9274
eeeeeqqqqqqqqeeee	chr1:1333911-1334161(-)$1	250	181	198	14.5707
fffffqqqqqqqqffff	chr5:65449177-65449427(+)$1	250	146	163	12.9432
:ddddqqqqqqqqdddd	chr11:108059787-108060062(-)$1	275	256	273	12.9494
eeeeeqqqqqqqqeeee	chr12:62954155-62954413(+)$1	258	145	162	14.5707
#ddddqqqqqqqqdddd	chr5:145650939-145651207(+)$1	268	159	176	13.9274
gggggqqqqqqqqgggg	chr15:40477639-40477865(+)$1	226	125	142	13.5728
:ddddqqqqqqqqdddd	chr7:140434429-140434674(-)$1	245	160	177	12.9494
c[cccqqqqqqqqccc]	chrX:123695524-123695770(-)$1	246	122	139	13.9004
eeeeeqqqqqqqqeeee	chr11:46783605-46783858(-)$1	253	152	169	14.5707
gg[bbqqqqqqqqbbgg	chr6:32945774-32946051(+)$1	277	137	154	12.6400
d[cccqqqqqqqqcccd	chr6:32943917-32944167(+)$1	250	179	196	13.8619
eeeeeqqqqqqqqeeee	chr4:119631042-119631290(+)$1	248	152	169	14.5707
eeeeeqqqqqqqqeeee	chr17:62499573-62499793(-)$1	220	58	75	14.5707
e[cccqqqqqqqqccce	chr10:111881756-111882004(+)$1	248	90	107	14.1656
cc[bbqqqqqqqqbb]c	chr16:16110233-16110500(+)$1	267	206	223	12.3735
ddd[aqqqqqqqqa]dd	chr3:43740650-43740881(+)$1	231	65	82	13.5785
ggg[aqqqqqqqqa]gg	chr10:70136622-70136908(-)$1	286	42	59	13.5352
eee[aqqqqqqqqa]ee	chr22:29688010-29688263(+)$1	253	181	198	14.1381
eeeeeqqqqqqqqeeee	chr5:139866435-139866695(+)$1	260	238	255	14.5707
=====qqqqqqqq====	chr3:33633840-33634099(-)$1	259	36	53	13.6663
eeeeeqqqqqqqqeeee	chr13:33095445-33095712(-)$1	267	66	83	14.5707
""cccqqqqqqqqccc3	chr6:122733403-122733649(+)$1	246	65	82	13.8959
eeeeeqqqqqqqqeeee	chr22:19398138-19398413(-)$1	275	64	81	14.5707
"""bbqqqqqqqqbb44	chr14:53569631-53569883(-)$1	252	41	58	12.4780
eddddqqqqqqqqdddd	chr6:33178823-33179070(+)$1	247	127	144	13.9780
!!cccqqqqqqqqccc]	chr6:36887212-36887468(+)$1	256	184	201	14.0716
eeeeeqqqqqqqqeeee	chr10:103567517-103567770(-)$1	253	128	145	14.5707
c[cccqqqqqqqqcccc	chr17:34163034-34163258(+)$1	224	40	57	13.8284
dddddqqqqqqqqdddd	chr7:23545293-23545535(-)$1	242	141	158	13.7732
fffffqqqqqqqqffff	chr2:230670458-230670712(-)$1	254	65	82	12.9432
###bbqqqqqqqqbbcc	chr17:80053206-80053452(-)$1	246	169	186	12.4777
eeeeeqqqqqqqqeeee	chr1:160208395-160208655(-)$1	260	177	194	14.5707
#ddddqqqqqqqqdddd	chr21:40636784-40637055(-)$1	271	141	158	13.9274

#otherMatches

#Seq PSSM
UUUUAUACUUAUCUGAA	chr5:38967385-38967634(-)$1	249	38	55	12.9432
GCCUUUAUCCAACAAGG	chr2:191523768-191524051(+)$1	283	218	235	14.5707
UUAGUUACUGUGUACUU	chr6:17852143-17852392(-)$1	249	38	55	13.5499
ACACAAAACAGUCUGUA	chr10:7247760-7248005(-)$1	245	215	232	13.8617
AAGUAAGUAAUUAUAUU	chr15:69714546-69714793(+)$1	247	226	243	13.5728
GCGUUUCCGUUUCAAUG	chr7:1608855-1609102(-)$1	247	4	21	14.5707
AGCUGCACAUACCCAGC	chr1:167984915-167985175(+)$1	260	194	211	13.9582
GUUACAGUCUUCAGUAA	chr6:122772758-122773006(-)$1	248	130	147	14.5707
GUAGUUUAUUGAUAGUA	chr1:207512626-207512884(+)$1	258	25	42	14.1381
UUGAAUGACUCCUUUCA	chr1:39796769-39797021(+)$1	252	4	21	14.5707
UCUCUAGGUAACAGGAG	chr12:53415379-53415623(+)$1	244	210	227	14.5707
UGGCACAAAGUUAUGCC	chr17:57917011-57917260(+)$1	249	199	216	14.5707
GACUGAUUUCUCCCAGC	chr5:154179025-154179291(+)$1	266	226	243	13.2752
UUUCAGAACUGAGUGAU	chrX:54839810-54840078(+)$1	268	219	236	13.4310
GUGCUAAGAUUUCAGUA	chr12:62777740-62777995(+)$1	255	221	238	13.6898
UGUGGAUCUUCUGCCGC	chr3:183705344-183705641(-)$1	297	4	21	12.9432
UAACUUUUUUACUAGUU	chr8:103282247-103282518(-)$1	271	26	43	14.5707
GUGUUUUUAAGCUAGCA	chr4:95494388-95494652(+)$1	264	158	175	14.5707
CAUCCAUUGUUCAGGAU	chr6:43487326-43487587(+)$1	261	160	177	14.5707
CAAUCUCAUCAGUGAUC	chr5:89815174-89815407(-)$1	233	129	146	13.8431
AAACUAGUAUCCAGGUU	chr17:62499537-62499773(-)$1	236	38	55	14.5707
AUAAAAUUACUCCUUUU	chr22:42262724-42262987(+)$1	263	80	97	13.8284
GAUUCUUUGUUUUGAAU	chr10:70515027-70515293(+)$1	266	79	96	12.9432
GGUUGUUUUUUCUCUAU	chr1:155883999-155884258(-)$1	259	125	142	13.5352
UAAAGCUUCCCAACUUU	chr15:63967182-63967483(-)$1	301	162	179	13.3299
AAAACCAGUUACAGUUU	chr3:32568259-32568511(-)$1	252	160	177	13.6003
CAAGUCCAUUGAUAUUU	chr22:22142996-22143211(-)$1	215	122	139	13.5728
GAUAAUGCAAUAUUUGU	chr16:11862204-11862467(-)$1	263	54	71	13.9582
UUGGCACUGUGUAGCCA	chr16:28844032-28844251(+)$1	219	36	53	12.9494
UUGCCAAGCCUUAGGCA	chr5:133509309-133509575(-)$1	266	205	222	12.9432
gucacuuccauuugcug	chr8:8861472-8861727(+)$1	255	24	41	12.8723
GCCAUGUUUAUGAGUGG	chr7:32914639-32914886(-)$1	247	118	135	13.8327
UGGCUCUCUUAAAAGUU	chr2:234178535-234178780(+)$1	245	220	237	14.0003
AGCUGUAGAAUUCCAGG	chr16:23424750-23425035(-)$1	285	72	89	13.9004
GAAGCCUUAUCCUGCAC	chr16:84158165-84158428(-)$1	263	170	187	12.5992
UGAAGUUUUAUGUCUUU	chr7:152006998-152007286(-)$1	288	46	63	14.5707
CAGGGUUUUUUUCCCCU	chr1:150595202-150595436(-)$1	234	34	51	14.0003
CAGAGACAUUAAGCUCA	chr3:9516640-9516895(+)$1	255	132	149	13.9111
UUGGGUCAGCCAUUCCA	chr6:158330827-158331077(+)$1	250	182	199	14.5707
CAGCUUCACUGAUAGCU	chr15:40477665-40477876(+)$1	211	99	116	13.5728
AGAAAAUUAAAAAUUUC	chr7:50663079-50663343(-)$1	264	181	198	13.9274
GGAGGUAAGGCUUCCUC	chr1:1333911-1334161(-)$1	250	181	198	14.5707
UUAUGUUAAGUUUCGUG	chr5:65449177-65449427(+)$1	250	146	163	12.9432
UUUUGUUGUUAAUCAAA	chr11:108059787-108060062(-)$1	275	256	273	12.9494
UUGACCAUAUACAGUCA	chr12:62954155-62954413(+)$1	258	145	162	14.5707
AGGUCGAGGAAGAGGCC	chr5:145650939-145651207(+)$1	268	159	176	13.9274
CAGCUUCACUGAUAGCU	chr15:40477639-40477865(+)$1	226	125	142	13.5728
AUCAGAACCCUCCUUGA	chr7:140434429-140434674(-)$1	245	160	177	12.9494
CUUUGGAAAUGGACGAU	chrX:123695524-123695770(-)$1	246	122	139	13.9004
UGGCAUGAAUGUUUGCC	chr11:46783605-46783858(-)$1	253	152	169	14.5707
GUACAUGAACAACUGGC	chr6:32945774-32946051(+)$1	277	137	154	12.6400
UACUCCUCCACCUGAGA	chr6:32943917-32944167(+)$1	250	179	196	13.8619
AUGCAGAAACAUAUGCA	chr4:119631042-119631290(+)$1	248	152	169	14.5707
AAACUAGUAUCCAGGUU	chr17:62499573-62499793(-)$1	220	58	75	14.5707
AUAUUUUACCAUUGAUU	chr10:111881756-111882004(+)$1	248	90	107	14.1656
GAUCGCUCACCCCUGUU	chr16:16110233-16110500(+)$1	267	206	223	12.3735
GUUGAGAAGAGCAUGAA	chr3:43740650-43740881(+)$1	231	65	82	13.5785
UUGUGAGUUUUCCCCCA	chr10:70136622-70136908(-)$1	286	42	59	13.5352
GCUUUGUAAAUUAAUGG	chr22:29688010-29688263(+)$1	253	181	198	14.1381
UGGGUAUUUUUUCACCU	chr5:139866435-139866695(+)$1	260	238	255	14.5707
UGAGAUUUUCUCCUCUC	chr3:33633840-33634099(-)$1	259	36	53	13.6663
UUCUUUUUACUUUAAGA	chr13:33095445-33095712(-)$1	267	66	83	14.5707
CAUAGGAACUUAACUAA	chr6:122733403-122733649(+)$1	246	65	82	13.8959
UGAAUAAAAGCCAAUUU	chr22:19398138-19398413(-)$1	275	64	81	14.5707
GUGUCUAAAUCUUGAGU	chr14:53569631-53569883(-)$1	252	41	58	12.4780
CGGCCGAUACCAGGGUC	chr6:33178823-33179070(+)$1	247	127	144	13.9780
CCAUGUUGCAGCUCAUC	chr6:36887212-36887468(+)$1	256	184	201	14.0716
GCAGAUCAUUUGCUUUG	chr10:103567517-103567770(-)$1	253	128	145	14.5707
ACUGAACAGAAUGUCAU	chr17:34163034-34163258(+)$1	224	40	57	13.8284
CACGAUCAAGAUCUCGU	chr7:23545293-23545535(-)$1	242	141	158	13.7732
UAGAUUUCUCAAUGUUU	chr2:230670458-230670712(-)$1	254	65	82	12.9432
UUCGGAGUCCACCCCAA	chr17:80053206-80053452(-)$1	246	169	186	12.4777
GGUUCGAGUAGCAGAAC	chr1:160208395-160208655(-)$1	260	177	194	14.5707
ACUGUAAGUUUUCACAG	chr21:40636784-40637055(-)$1	271	141	158	13.9274

#DB
(((((........))))	chr5:38967385-38967634(-)$1	1	38	55	12.9432
(((((........))))	chr2:191523768-191524051(+)$1	1	218	235	14.5707
(((((........))).	chr6:17852143-17852392(-)$1	1	38	55	13.5499
(((((........))).	chr10:7247760-7248005(-)$1	1	215	232	13.8617
(((((........))))	chr15:69714546-69714793(+)$1	1	226	243	13.5728
(((((........))))	chr7:1608855-1609102(-)$1	1	4	21	14.5707
.((((........))))	chr1:167984915-167985175(+)$1	1	194	211	13.9582
(((((........))))	chr6:122772758-122773006(-)$1	1	130	147	14.5707
(((.(........).))	chr1:207512626-207512884(+)$1	1	25	42	14.1381
(((((........))))	chr1:39796769-39797021(+)$1	1	4	21	14.5707
(((((........))))	chr12:53415379-53415623(+)$1	1	210	227	14.5707
(((((........))))	chr17:57917011-57917260(+)$1	1	199	216	14.5707
(.(((........))))	chr5:154179025-154179291(+)$1	1	226	243	13.2752
..(((........))).	chrX:54839810-54840078(+)$1	1	219	236	13.4310
(((((........))).	chr12:62777740-62777995(+)$1	1	221	238	13.6898
(((((........))))	chr3:183705344-183705641(-)$1	1	4	21	12.9432
(((((........))))	chr8:103282247-103282518(-)$1	1	26	43	14.5707
(((((........))))	chr4:95494388-95494652(+)$1	1	158	175	14.5707
(((((........))))	chr6:43487326-43487587(+)$1	1	160	177	14.5707
..(((........))).	chr5:89815174-89815407(-)$1	1	129	146	13.8431
(((((........))))	chr17:62499537-62499773(-)$1	1	38	55	14.5707
..(((........))).	chr22:42262724-42262987(+)$1	1	80	97	13.8284
(((((........))))	chr10:70515027-70515293(+)$1	1	79	96	12.9432
(((.(........).))	chr1:155883999-155884258(-)$1	1	125	142	13.5352
.((((........))))	chr15:63967182-63967483(-)$1	1	162	179	13.3299
(((((........))))	chr3:32568259-32568511(-)$1	1	160	177	13.6003
(((((........))))	chr22:22142996-22143211(-)$1	1	122	139	13.5728
.((((........))))	chr16:11862204-11862467(-)$1	1	54	71	13.9582
.((((........))))	chr16:28844032-28844251(+)$1	1	36	53	12.9494
(((((........))))	chr5:133509309-133509575(-)$1	1	205	222	12.9432
((..(........)..)	chr8:8861472-8861727(+)$1	1	24	41	12.8723
)((((........))))	chr7:32914639-32914886(-)$1	1	118	135	13.8327
.((((........))))	chr2:234178535-234178780(+)$1	1	220	237	14.0003
(.(((........))).	chr16:23424750-23425035(-)$1	1	72	89	13.9004
(..((........))..	chr16:84158165-84158428(-)$1	1	170	187	12.5992
(((((........))))	chr7:152006998-152007286(-)$1	1	46	63	14.5707
.((((........))))	chr1:150595202-150595436(-)$1	1	34	51	14.0003
..(((........))).	chr3:9516640-9516895(+)$1	1	132	149	13.9111
(((((........))))	chr6:158330827-158331077(+)$1	1	182	199	14.5707
(((((........))))	chr15:40477665-40477876(+)$1	1	99	116	13.5728
.((((........))))	chr7:50663079-50663343(-)$1	1	181	198	13.9274
(((((........))))	chr1:1333911-1334161(-)$1	1	181	198	14.5707
(((((........))))	chr5:65449177-65449427(+)$1	1	146	163	12.9432
.((((........))))	chr11:108059787-108060062(-)$1	1	256	273	12.9494
(((((........))))	chr12:62954155-62954413(+)$1	1	145	162	14.5707
.((((........))))	chr5:145650939-145651207(+)$1	1	159	176	13.9274
(((((........))))	chr15:40477639-40477865(+)$1	1	125	142	13.5728
.((((........))))	chr7:140434429-140434674(-)$1	1	160	177	12.9494
(.(((........))).	chrX:123695524-123695770(-)$1	1	122	139	13.9004
(((((........))))	chr11:46783605-46783858(-)$1	1	152	169	14.5707
((.((........))))	chr6:32945774-32946051(+)$1	1	137	154	12.6400
(.(((........))))	chr6:32943917-32944167(+)$1	1	179	196	13.8619
(((((........))))	chr4:119631042-119631290(+)$1	1	152	169	14.5707
(((((........))))	chr17:62499573-62499793(-)$1	1	58	75	14.5707
(.(((........))))	chr10:111881756-111882004(+)$1	1	90	107	14.1656
((.((........)).)	chr16:16110233-16110500(+)$1	1	206	223	12.3735
(((.(........).))	chr3:43740650-43740881(+)$1	1	65	82	13.5785
(((.(........).))	chr10:70136622-70136908(-)$1	1	42	59	13.5352
(((.(........).))	chr22:29688010-29688263(+)$1	1	181	198	14.1381
(((((........))))	chr5:139866435-139866695(+)$1	1	238	255	14.5707
(((((........))))	chr3:33633840-33634099(-)$1	1	36	53	13.6663
(((((........))))	chr13:33095445-33095712(-)$1	1	66	83	14.5707
..(((........))).	chr6:122733403-122733649(+)$1	1	65	82	13.8959
(((((........))))	chr22:19398138-19398413(-)$1	1	64	81	14.5707
...((........))..	chr14:53569631-53569883(-)$1	1	41	58	12.4780
)((((........))))	chr6:33178823-33179070(+)$1	1	127	144	13.9780
..(((........))).	chr6:36887212-36887468(+)$1	1	184	201	14.0716
(((((........))))	chr10:103567517-103567770(-)$1	1	128	145	14.5707
(.(((........))))	chr17:34163034-34163258(+)$1	1	40	57	13.8284
)((((........))))	chr7:23545293-23545535(-)$1	1	141	158	13.7732
(((((........))))	chr2:230670458-230670712(-)$1	1	65	82	12.9432
...((........))))	chr17:80053206-80053452(-)$1	1	169	186	12.4777
(((((........))))	chr1:160208395-160208655(-)$1	1	177	194	14.5707
.((((........))))	chr21:40636784-40637055(-)$1	1	141	158	13.9274

#PSSM
e : 0.36	f : 0.09	g : 0.09	# : 0.08	c : 0.08	d : 0.06	: : 0.04	! : 0.04	" : 0.04	[ : 0.02	b : 0.02	$ : 0.01	% : 0.01	= : 0.01	
e : 0.33	d : 0.24	f : 0.09	g : 0.09	[ : 0.08	# : 0.04	" : 0.04	! : 0.02	$ : 0.01	c : 0.01	= : 0.01	
e : 0.32	d : 0.21	c : 0.20	f : 0.08	g : 0.08	! : 0.02	[ : 0.02	= : 0.01	" : 0.01	# : 0.01	
e : 0.29	c : 0.20	d : 0.20	f : 0.08	[ : 0.06	b : 0.06	g : 0.05	! : 0.01	= : 0.01	
e : 0.29	c : 0.20	d : 0.20	f : 0.08	a : 0.08	b : 0.06	g : 0.05	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
e : 0.29	c : 0.20	d : 0.20	f : 0.08	a : 0.08	b : 0.06	g : 0.05	= : 0.01	
e : 0.29	c : 0.20	d : 0.20	f : 0.08	] : 0.06	b : 0.06	g : 0.05	2 : 0.01	= : 0.01	
e : 0.32	c : 0.21	d : 0.21	g : 0.09	f : 0.08	4 : 0.02	2 : 0.01	] : 0.01	= : 0.01	
e : 0.33	d : 0.24	g : 0.09	f : 0.08	] : 0.06	4 : 0.05	c : 0.04	2 : 0.02	3 : 0.02	b : 0.01	= : 0.01	

#score	1022.6180977021803
#seq	74
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_transcript_m2_run2.txt

#BEAR
$eeeeeuuuuuuuuuuuueeee	chr12:57110926-57111224(-)$1	298	64	86	22.6320
eeeeevvvvvvvvvvvvveeee	chr22:23630501-23630793(+)$1	292	73	95	24.4151
:dddduuuuuuuuuuuudddde	chr19:10921754-10922009(+)$1	255	111	133	22.2030
iiiiiattttttttttta]iii	chr19:28918000-28918285(-)$1	285	94	116	21.5749
))cccvvvvvvvvvvvvvccc>	chr7:76189473-76189721(+)$1	248	81	103	23.7911
iiiiiwwwwwwwwwwwwwwiii	chr17:46972791-46973143(+)$1	352	45	67	22.6722
%eeeeettttttttttteeeee	chr17:76120349-76120645(-)$1	296	125	147	20.5725
"""ddddtttttttttttdddd	chr12:56634793-56635055(-)$1	262	138	160	20.9624
:dddduuuuuuuuuuuuddddf	chr10:7279795-7280081(-)$1	286	139	161	22.0717
d[cccvvvvvvvvvvvvvcccd	chr5:179199674-179199973(+)$1	299	217	239	24.6914
[ddddvvvvvvvvvvvvvdddd	chr19:36212045-36212320(+)$1	275	53	75	25.0687
fffffvvvvvvvvvvvvvffff	chr12:56225340-56225627(+)$1	287	126	148	23.4606
"ddddvvvvvvvvvvvvvdddd	chr11:801549-801934(-)$1	385	84	106	25.1296
dd!!bbuuuuuuuuuuuubb22	chr5:137803380-137803651(+)$1	271	92	114	21.3352
c[cccvvvvvvvvvvvvvccc]	chr8:23392735-23393015(+)$1	280	37	59	24.7908
fff[awwwwwwwwwwwwwwa]f	chr12:6957456-6957752(-)$1	296	75	97	22.3620
ddddwwwwwwwwwwwwwwdddd	chr20:35411197-35411512(-)$1	315	182	204	23.1582
hhhhawwwwwwwwwwwwwwa]h	chr7:98739972-98740266(-)$1	294	192	214	21.7355
"""cccuuuuuuuuuuuuccc]	chr20:30281960-30282264(-)$1	304	139	161	23.1080
:ddddvvvvvvvvvvvvvdddd	chr9:134019822-134020115(+)$1	293	110	132	24.3728
!!cccwwwwwwwwwwwwwwccc	chr3:186702167-186702493(+)$1	326	287	309	23.3862
b[cccwwwwwwwwwwwwwwccc	chr21:47846536-47846812(+)$1	276	203	225	23.0372
fffffwwwwwwwwwwwwwwfff	chr1:143411729-143411997(-)$1	268	153	175	22.1016
fffffvvvvvvvvvvvvvffff	chr19:5787087-5787356(-)$1	269	55	77	23.4606
eeeewwwwwwwwwwwwwweeee	chr22:50024018-50024312(-)$1	294	128	150	22.8349
[cccwwwwwwwwwwwwwwcccd	chr3:150145008-150145276(+)$1	268	76	98	23.2100
&dddduuuuuuuuuuuudddd6	chr19:5130087-5130409(+)$1	322	262	284	21.9015
fffffwwwwwwwwwwwwwwfff	chr19:3630376-3630675(-)$1	299	149	171	22.1016
!ddddvvvvvvvvvvvvvdddd	chr22:50040632-50040926(-)$1	294	11	33	25.1398
:ddddwwwwwwwwwwwwwwddd	chr2:74588300-74588621(-)$1	321	10	32	22.8157
gggggvvvvvvvvvvvvvgggg	chr11:65764996-65765405(-)$1	409	334	356	24.1234
c!!cccuuuuuuuuuuuucccc	chr1:154241579-154241893(+)$1	314	105	127	23.0707
ccc[ccctttttttttttccc]	chr4:1239209-1239556(-)$1	347	150	172	21.1823
gggggwwwwwwwwwwwwwwggg	chr2:139259807-139260139(+)$1	332	43	65	22.7084
eeeeevvvvvvvvvvvvveeee	chr21:39466487-39466747(-)$1	260	51	73	24.4151
=====wwwwwwwwwwwwww===	chr17:16350897-16351271(+)$1	374	178	200	22.8930
:ddddvvvvvvvvvvvvvdddd	chr5:665729-666040(+)$1	311	265	287	24.3728
[cccwwwwwwwwwwwwwwcccd	chr16:2811664-2811923(+)$1	259	224	246	23.2100
:ddddvvvvvvvvvvvvvdddd	chr12:48188998-48189346(-)$1	348	144	166	24.3728
#ddddvvvvvvvvvvvvvdddd	chr16:81532880-81533166(+)$1	286	52	74	25.1227
""cccvvvvvvvvvvvvvccc3	chr20:62573172-62573429(-)$1	257	45	67	24.8913
eeeewwwwwwwwwwwwwweeee	chrX:73065169-73065418(-)$1	249	14	36	22.8349
ee[bbwwwwwwwwwwwwwwbbe	chr2:97552988-97553294(-)$1	306	5	27	21.9562
bb[bbuuuuuuuuuuuubbbb]	chr12:50492864-50493130(+)$1	266	180	202	20.6884
cc[cccuuuuuuuuuuuucccc	chr9:35730375-35730668(-)$1	293	121	143	22.9867
cddddvvvvvvvvvvvvvdddd	chr12:122233282-122233601(-)$1	319	27	49	24.9476
FFdddduuuuuuuuuuuudddd	chr12:49434675-49434942(-)$1	267	57	79	22.1700
"""bbuuuuuuuuuuuubb]cc	chr16:89468974-89469303(-)$1	329	44	66	21.5689
eeeeevvvvvvvvvvvvveeee	chr2:69584629-69584950(-)$1	321	72	94	24.4151
:eeeeeuuuuuuuuuuuueeee	chr19:47219617-47219941(-)$1	324	75	97	22.0235
ddd!!attttttttttta22dd	chr8:91305200-91305551(+)$1	351	129	151	21.3072
ddeeeeettttttttttteeee	chr12:9466127-9466418(+)$1	291	85	107	20.5170
:ddddvvvvvvvvvvvvvdddd	chr10:45937133-45937465(+)$1	332	52	74	24.3728
:dddduuuuuuuuuuuudddd:	chr7:153107140-153107390(-)$1	250	143	165	21.1673
eeeewwwwwwwwwwwwwweeee	chr19:38742411-38742748(-)$1	337	11	33	22.8349
!cccwwwwwwwwwwwwwwccc]	chr1:143405314-143405626(-)$1	312	217	239	23.2513
:ddddvvvvvvvvvvvvvdddd	chr22:49929364-49929671(-)$1	307	158	180	24.3728
ddd[bbuuuuuuuuuuuubb33	chr19:42734457-42734758(-)$1	301	52	74	21.7922
+eeeeettttttttttteeeee	chr19:2014163-2014412(-)$1	249	160	182	20.5655
cc[ddddtttttttttttdddd	chr19:3696999-3697290(-)$1	291	74	96	20.8931
!!bbwwwwwwwwwwwwwwbb22	chr19:7973881-7974154(+)$1	273	201	223	21.5948
eeeeevvvvvvvvvvvvveeee	chr6:34760401-34760743(+)$1	342	1	23	24.4151
:ddddvvvvvvvvvvvvvdddd	chr9:131016654-131016968(+)$1	314	105	127	24.3728
fffffwwwwwwwwwwwwwwfff	chr11:431068-431349(-)$1	281	47	69	22.1016
""cccuuuuuuuuuuuuccc33	chr1:97271618-97271944(+)$1	326	228	250	22.8351
ffffffuuuuuuuuuuuuffff	chr2:242694542-242694845(+)$1	303	62	84	21.5493

#otherMatches

#Seq PSSM
CUCCUCCCUCCCCCAAAAGAGG	chr12:57110926-57111224(-)$1	298	64	86	22.6320
GGGCACUCAUUUCCCCACUGCC	chr22:23630501-23630793(+)$1	292	73	95	24.4151
AGCCACCUCCGUCUUCAUGGCC	chr19:10921754-10922009(+)$1	255	111	133	22.2030
GUCCCCUCACGUCCACUGUGGG	chr19:28918000-28918285(-)$1	285	94	116	21.5749
cugguuuccccccaccccaccc	chr7:76189473-76189721(+)$1	248	81	103	23.7911
CCUGGCUCACUUAAACUUACCA	chr17:46972791-46973143(+)$1	352	45	67	22.6722
UGGGGCCCCCAACCCUUGCCCC	chr17:76120349-76120645(-)$1	296	125	147	20.5725
CCGUGUCCUCCCCUAUAUGACA	chr12:56634793-56635055(-)$1	262	138	160	20.9624
agucacucucaucucccugacg	chr10:7279795-7280081(-)$1	286	139	161	22.0717
uucuuuguuuguuuguuugaga	chr5:179199674-179199973(+)$1	299	217	239	24.6914
AGCUGcccccuccucccccagc	chr19:36212045-36212320(+)$1	275	53	75	25.0687
CUCACCCUUCCCAAUCCAGUGG	chr12:56225340-56225627(+)$1	287	126	148	23.4606
CUGCUUCCCUAUGUCCCUGGCA	chr11:801549-801934(-)$1	385	84	106	25.1296
gguugcuaccucuuacccgucc	chr5:137803380-137803651(+)$1	271	92	114	21.3352
CUGGCCUCAGCUCCACAUGUCU	chr8:23392735-23393015(+)$1	280	37	59	24.7908
uucccucuucccuauccuugug	chr12:6957456-6957752(-)$1	296	75	97	22.3620
UACUUCUUCCAUAAUAAUAGUA	chr20:35411197-35411512(-)$1	315	182	204	23.1582
CCAGCCCUCUUCAGUCUCAGUC	chr7:98739972-98740266(-)$1	294	192	214	21.7355
CCUAGACCCUCUUCCCCUUCUC	chr20:30281960-30282264(-)$1	304	139	161	23.1080
UCUUUUGUUCCCCCUUCUAAAG	chr9:134019822-134020115(+)$1	293	110	132	24.3728
aauggaaaccuaccucaaccca	chr3:186702167-186702493(+)$1	326	287	309	23.3862
CCCACCCUGUCCUGCCCCUGUG	chr21:47846536-47846812(+)$1	276	203	225	23.0372
guccccaccugcaacauucggg	chr1:143411729-143411997(-)$1	268	153	175	22.1016
GCCAGCCACAUCCUCGCACUGG	chr19:5787087-5787356(-)$1	269	55	77	23.4606
AUUCCAAAUCCUCCCGCUGAGU	chr22:50024018-50024312(-)$1	294	128	150	22.8349
agaauauuauaagccccuuuca	chr3:150145008-150145276(+)$1	268	76	98	23.2100
CCAGUUUUAUUUUAUUUACUGC	chr19:5130087-5130409(+)$1	322	262	284	21.9015
CCACCUCCUCCUCAUCUCCGGU	chr19:3630376-3630675(-)$1	299	149	171	22.1016
UGGGUUAUCUCUCUUUCUACCU	chr22:50040632-50040926(-)$1	294	11	33	25.1398
UGCUGUCCCCUUCGACCCUCAG	chr2:74588300-74588621(-)$1	321	10	32	22.8157
uuaucauuacaaaccucagaug	chr11:65764996-65765405(-)$1	409	334	356	24.1234
GUUGUCCUCAUCCCAUCAGACC	chr1:154241579-154241893(+)$1	314	105	127	23.0707
gugucacccugcccucccgugc	chr4:1239209-1239556(-)$1	347	150	172	21.1823
UGGGGACUACCUCCCACGCCCC	chr2:139259807-139260139(+)$1	332	43	65	22.7084
GAUGGUUUCCUUUCAUCUCCAU	chr21:39466487-39466747(-)$1	260	51	73	24.4151
UUCCCUUCCCUACAUCCCUGGG	chr17:16350897-16351271(+)$1	374	178	200	22.8930
UCCUGAccaccccucccccagg	chr5:665729-666040(+)$1	311	265	287	24.3728
UCUUCUUCUCCCACAUCUAAGA	chr16:2811664-2811923(+)$1	259	224	246	23.2100
UGUGGUUCCCUCCUUAUUCCAC	chr12:48188998-48189346(-)$1	348	144	166	24.3728
CUGCACACACACACCACUUGCA	chr16:81532880-81533166(+)$1	286	52	74	25.1227
cugccacaccccauucccggcc	chr20:62573172-62573429(-)$1	257	45	67	24.8913
AUAUUUAUCCCAGUUUCUGUGU	chrX:73065169-73065418(-)$1	249	14	36	22.8349
CCUGCUGUCCCUCCUUCCUGCG	chr2:97552988-97553294(-)$1	306	5	27	21.9562
AUAGUGUUAGAGAGAGAACAUG	chr12:50492864-50493130(+)$1	266	180	202	20.6884
UGUACCUACAUUCCACCUGGUC	chr9:35730375-35730668(-)$1	293	121	143	22.9867
GCCAGUCACAGCUCCUCCCUGG	chr12:122233282-122233601(-)$1	319	27	49	24.9476
CAGGGGAAUUCCACACUACCCC	chr12:49434675-49434942(-)$1	267	57	79	22.1700
CCCGCCCACCUCCUCCCGCAGU	chr16:89468974-89469303(-)$1	329	44	66	21.5689
GACAUCAAAGAUCUACAAAUGU	chr2:69584629-69584950(-)$1	321	72	94	24.4151
UCUCCUUUCUGAUCUUCUGGGA	chr19:47219617-47219941(-)$1	324	75	97	22.0235
uggcccuacauuauccugaucc	chr8:91305200-91305551(+)$1	351	129	151	21.3072
CCAGGGGCUUGUCACCUUCCCC	chr12:9466127-9466418(+)$1	291	85	107	20.5170
CCCUGACCUCCUACGCACCAGG	chr10:45937133-45937465(+)$1	332	52	74	24.3728
aggucccacuauucucagaccc	chr7:153107140-153107390(-)$1	250	143	165	21.1673
GGGGCUCCAUUCUGUCCUCCCC	chr19:38742411-38742748(-)$1	337	11	33	22.8349
cuacuuuuucagauaucuguau	chr1:143405314-143405626(-)$1	312	217	239	23.2513
CCCCCUGCCCACCUUUCUGGGG	chr22:49929364-49929671(-)$1	307	158	180	24.3728
AGGACCUCCUACCCCCUUGGCC	chr19:42734457-42734758(-)$1	301	52	74	21.7922
CCAGGCCCUGCACCCUUGCCUG	chr19:2014163-2014412(-)$1	249	160	182	20.5655
cuuaguccuccuccauccggcu	chr19:3696999-3697290(-)$1	291	74	96	20.8931
CCCUGACCCCGGAACAGAAGAU	chr19:7973881-7974154(+)$1	273	201	223	21.5948
GGUCACCCCGUGCUCCCUUGAC	chr6:34760401-34760743(+)$1	342	1	23	24.4151
CUUCCAGCCCCUUUUCCAGGAA	chr9:131016654-131016968(+)$1	314	105	127	24.3728
CGCGGACGCCCCCACACCCCCG	chr11:431068-431349(-)$1	281	47	69	22.1016
CAUGAUCCAUGACCACCUCACC	chr1:97271618-97271944(+)$1	326	228	250	22.8351
GCCGUGUCCCUCCUCCUCCACG	chr2:242694542-242694845(+)$1	303	62	84	21.5493

#DB
.(((((............))))	chr12:57110926-57111224(-)$1	1	64	86	22.6320
(((((.............))))	chr22:23630501-23630793(+)$1	1	73	95	24.4151
.((((............))))(	chr19:10921754-10922009(+)$1	1	111	133	22.2030
((((((...........).)))	chr19:28918000-28918285(-)$1	1	94	116	21.5749
..(((.............))).	chr7:76189473-76189721(+)$1	1	81	103	23.7911
(((((..............)))	chr17:46972791-46973143(+)$1	1	45	67	22.6722
.(((((...........)))))	chr17:76120349-76120645(-)$1	1	125	147	20.5725
...((((...........))))	chr12:56634793-56635055(-)$1	1	138	160	20.9624
.((((............))))(	chr10:7279795-7280081(-)$1	1	139	161	22.0717
(.(((.............))))	chr5:179199674-179199973(+)$1	1	217	239	24.6914
.((((.............))))	chr19:36212045-36212320(+)$1	1	53	75	25.0687
(((((.............))))	chr12:56225340-56225627(+)$1	1	126	148	23.4606
.((((.............))))	chr11:801549-801934(-)$1	1	84	106	25.1296
((..((............))..	chr5:137803380-137803651(+)$1	1	92	114	21.3352
(.(((.............))).	chr8:23392735-23393015(+)$1	1	37	59	24.7908
(((.(..............).)	chr12:6957456-6957752(-)$1	1	75	97	22.3620
((((..............))))	chr20:35411197-35411512(-)$1	1	182	204	23.1582
(((((..............).)	chr7:98739972-98740266(-)$1	1	192	214	21.7355
...(((............))).	chr20:30281960-30282264(-)$1	1	139	161	23.1080
.((((.............))))	chr9:134019822-134020115(+)$1	1	110	132	24.3728
..(((..............)))	chr3:186702167-186702493(+)$1	1	287	309	23.3862
(.(((..............)))	chr21:47846536-47846812(+)$1	1	203	225	23.0372
(((((..............)))	chr1:143411729-143411997(-)$1	1	153	175	22.1016
(((((.............))))	chr19:5787087-5787356(-)$1	1	55	77	23.4606
((((..............))))	chr22:50024018-50024312(-)$1	1	128	150	22.8349
.(((..............))))	chr3:150145008-150145276(+)$1	1	76	98	23.2100
.((((............)))).	chr19:5130087-5130409(+)$1	1	262	284	21.9015
(((((..............)))	chr19:3630376-3630675(-)$1	1	149	171	22.1016
.((((.............))))	chr22:50040632-50040926(-)$1	1	11	33	25.1398
.((((..............)))	chr2:74588300-74588621(-)$1	1	10	32	22.8157
(((((.............))))	chr11:65764996-65765405(-)$1	1	334	356	24.1234
(..(((............))))	chr1:154241579-154241893(+)$1	1	105	127	23.0707
(((.(((...........))).	chr4:1239209-1239556(-)$1	1	150	172	21.1823
(((((..............)))	chr2:139259807-139260139(+)$1	1	43	65	22.7084
(((((.............))))	chr21:39466487-39466747(-)$1	1	51	73	24.4151
(((((..............)))	chr17:16350897-16351271(+)$1	1	178	200	22.8930
.((((.............))))	chr5:665729-666040(+)$1	1	265	287	24.3728
.(((..............))))	chr16:2811664-2811923(+)$1	1	224	246	23.2100
.((((.............))))	chr12:48188998-48189346(-)$1	1	144	166	24.3728
.((((.............))))	chr16:81532880-81533166(+)$1	1	52	74	25.1227
..(((.............))).	chr20:62573172-62573429(-)$1	1	45	67	24.8913
((((..............))))	chrX:73065169-73065418(-)$1	1	14	36	22.8349
((.((..............)))	chr2:97552988-97553294(-)$1	1	5	27	21.9562
((.((............)))).	chr12:50492864-50493130(+)$1	1	180	202	20.6884
((.(((............))))	chr9:35730375-35730668(-)$1	1	121	143	22.9867
(((((.............))))	chr12:122233282-122233601(-)$1	1	27	49	24.9476
((((((............))))	chr12:49434675-49434942(-)$1	1	57	79	22.1700
...((............)).))	chr16:89468974-89469303(-)$1	1	44	66	21.5689
(((((.............))))	chr2:69584629-69584950(-)$1	1	72	94	24.4151
.(((((............))))	chr19:47219617-47219941(-)$1	1	75	97	22.0235
(((..(...........)..))	chr8:91305200-91305551(+)$1	1	129	151	21.3072
))(((((...........))))	chr12:9466127-9466418(+)$1	1	85	107	20.5170
.((((.............))))	chr10:45937133-45937465(+)$1	1	52	74	24.3728
.((((............)))).	chr7:153107140-153107390(-)$1	1	143	165	21.1673
((((..............))))	chr19:38742411-38742748(-)$1	1	11	33	22.8349
.(((..............))).	chr1:143405314-143405626(-)$1	1	217	239	23.2513
.((((.............))))	chr22:49929364-49929671(-)$1	1	158	180	24.3728
(((.((............))..	chr19:42734457-42734758(-)$1	1	52	74	21.7922
.(((((...........)))))	chr19:2014163-2014412(-)$1	1	160	182	20.5655
((.((((...........))))	chr19:3696999-3697290(-)$1	1	74	96	20.8931
..((..............))..	chr19:7973881-7974154(+)$1	1	201	223	21.5948
(((((.............))))	chr6:34760401-34760743(+)$1	1	1	23	24.4151
.((((.............))))	chr9:131016654-131016968(+)$1	1	105	127	24.3728
(((((..............)))	chr11:431068-431349(-)$1	1	47	69	22.1016
..(((............)))..	chr1:97271618-97271944(+)$1	1	228	250	22.8351
((((((............))))	chr2:242694542-242694845(+)$1	1	62	84	21.5493

#PSSM
: : 0.16	e : 0.12	f : 0.10	" : 0.09	d : 0.09	c : 0.09	! : 0.06	[ : 0.04	i : 0.03	b : 0.03	g : 0.03	$ : 0.01	) : 0.01	% : 0.01	h : 0.01	& : 0.01	= : 0.01	# : 0.01	F : 0.01	+ : 0.01	
d : 0.31	e : 0.18	f : 0.10	c : 0.09	" : 0.07	[ : 0.04	! : 0.04	i : 0.03	g : 0.03	) : 0.01	h : 0.01	= : 0.01	b : 0.01	F : 0.01	
d : 0.30	e : 0.18	c : 0.16	f : 0.10	[ : 0.06	" : 0.04	i : 0.03	! : 0.03	g : 0.03	h : 0.01	= : 0.01	b : 0.01	
d : 0.30	c : 0.19	e : 0.18	f : 0.09	b : 0.06	[ : 0.04	i : 0.03	! : 0.03	g : 0.03	h : 0.01	= : 0.01	
d : 0.28	c : 0.16	e : 0.13	w : 0.12	f : 0.09	b : 0.07	i : 0.03	a : 0.03	g : 0.03	= : 0.01	! : 0.01	
v : 0.33	w : 0.30	u : 0.10	e : 0.07	c : 0.06	d : 0.04	a : 0.03	b : 0.03	f : 0.01	
v : 0.33	w : 0.30	u : 0.24	t : 0.06	d : 0.03	c : 0.01	e : 0.01	
v : 0.33	w : 0.30	u : 0.24	t : 0.12	
v : 0.33	w : 0.30	u : 0.24	t : 0.12	
v : 0.33	w : 0.30	u : 0.24	t : 0.12	
v : 0.33	w : 0.30	u : 0.24	t : 0.12	
v : 0.33	w : 0.30	u : 0.24	t : 0.12	
v : 0.33	w : 0.30	u : 0.24	t : 0.12	
v : 0.33	w : 0.30	u : 0.24	t : 0.12	
v : 0.33	w : 0.30	u : 0.24	t : 0.12	
v : 0.33	w : 0.30	u : 0.24	t : 0.12	
v : 0.33	w : 0.30	u : 0.24	t : 0.12	
v : 0.33	w : 0.30	u : 0.13	d : 0.06	t : 0.06	a : 0.03	e : 0.03	b : 0.03	c : 0.01	
d : 0.28	e : 0.18	c : 0.18	w : 0.18	b : 0.07	f : 0.04	] : 0.01	g : 0.01	2 : 0.01	
d : 0.30	c : 0.21	e : 0.18	f : 0.09	b : 0.07	i : 0.03	a : 0.03	g : 0.03	= : 0.01	] : 0.01	2 : 0.01	
d : 0.31	c : 0.21	e : 0.18	f : 0.09	i : 0.03	2 : 0.03	] : 0.03	g : 0.03	b : 0.03	3 : 0.03	= : 0.01	
d : 0.30	e : 0.21	f : 0.12	] : 0.07	c : 0.07	3 : 0.04	i : 0.03	2 : 0.03	g : 0.03	> : 0.01	h : 0.01	6 : 0.01	= : 0.01	: : 0.01	

#score	1511.9966635888711
#seq	66
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF103XLC_GRSF1_transcript_m1_run1.txt

#BEAR
fffff[dddd####ddddmmmmdddd]ddddffffff444	chr7:137447790-137448004(-)$1	214	43	83	13.3874
ccc"""============mmmm============333ccc	chr2:236874737-236875138(+)$1	401	25	65	18.9592
d]accc[ccc!!ccc[bboooooobb]ccc333ccc]ccc	chr16:11036118-11036405(-)$1	287	159	199	13.5911
iiii####eeeee[cccmmmmccc]eeeee4444iiiiii	chr3:48451914-48452215(-)$1	301	38	78	14.6332
======[==========nnnnn==========]=======	chr13:113976997-113977272(+)$1	275	102	142	18.4300
c:ggggggg[ccc[ddddnnnnnddddcccgggggggeee	chr6:7246650-7246964(+)$1	314	98	138	13.3989
cccbbggggggg!!a!!ccclllccc22a333ggggggg]	chr19:19039953-19040254(-)$1	301	220	260	14.0605
============!!ddddmmmmdddd==============	chr17:79111819-79112110(-)$1	291	193	233	21.5273
fiiiiiiiii[ccc!!bbmmmmbb22ccciiiiiiiii22	chr10:135234405-135234672(+)$1	267	7	47	16.2114
==========="""ddddoooooodddd==========]=	chr21:47560315-47560573(-)$1	258	65	105	19.6169
iiiiiii!!ccc[bbrrrrrrrrrbb]ccc4444iiiiii	chr17:80348085-80348362(-)$1	277	160	200	13.5484
fff[ccc[ccc[ddddcccmmmmccc]ddddccc]ccc]f	chr7:6695700-6696013(+)$1	313	136	176	13.1436
eeeee!!cccccc[ddddmmmmdddd]ccc]ccc22eeee	chr10:101379997-101380270(-)$1	273	231	271	15.6348
###ccc[iiiiiiiii[ammmmaiiiiiiiii]ccc]hhh	chr17:80348429-80348701(-)$1	272	90	130	16.3706
d[a[ggggggg!!a[ccclllccc]a]ggggggga]dddd	chr16:15149652-15149989(-)$1	337	13	53	14.3392
cc!!bb####ccc[ddddmmmmdddd]ccc22bb22ccc3	chr12:54676539-54676759(+)$1	220	37	77	16.3357
ccc####eeeeeddddoooooodddd]eeeee4444ccc2	chr9:123630794-123631138(-)$1	344	171	211	13.1703
ee####a!!ccc!!eeeeemmmmeeeee333ccc22a444	chr12:72148699-72148973(+)$1	274	172	212	13.5763
$eeeeeccc[ccc[ddddmmmmddddccc]ccc]eeeee3	chr16:88559820-88560137(+)$1	317	192	232	14.4504
""a[dddd!!gggggggooooooggggggg333dddd]ac	chr19:18548043-18548314(-)$1	271	219	259	13.3114
ggg####iiiiiiiii[bblllbb]iiiiiiiii]ggggg	chr8:38853775-38854106(-)$1	331	74	114	15.5604
[bb"""ggggggg[ddddmmmmdddd]ggggggg22bb]e	chr14:24114406-24114675(+)$1	269	31	71	16.6284
b[iiiiiiiii"""bb[ammmma]bb333iiiiiiiii]b	chr17:38247133-38247429(+)$1	296	230	270	17.2387
:============[dddd[iiiiiiiii[a!!a[gggggg	chr9:136719066-136719377(-)$1	311	6	46	13.4375
[iiiiiiiiieeeeecccmmmmccc]eeeee22iiiiiii	chr20:55984026-55984391(+)$1	365	37	77	16.2309
fiiiiiiiii[ccc!!bbmmmmbb22ccciiiiiiiii22	chr10:135234292-135234590(+)$1	298	120	160	16.2114
gggggg[bb[bb"""cccmmmmcccbb]bbggggggg]cc	chr1:28864241-28864508(+)$1	267	52	92	14.2019
==============[cccrrrrrrrrrccc]=========	chr21:47560645-47560865(-)$1	220	103	143	16.1987
==========="""ddddoooooodddd==========]=	chr21:47560525-47560801(-)$1	276	92	132	19.6169
ddddggggggg####cccmmmmcccggggggg]dddd]bb	chr18:55997868-55998097(+)$1	229	89	129	13.9973
::iiiiiiiii[dddd[ccclllccc]dddd]iiiiiiii	chr9:136229521-136229788(-)$1	267	137	177	13.4936
==========ccc!!cccmmmmccc22ccc333=======	chr2:128620786-128621102(-)$1	316	184	224	20.1632
cc!!bb####ccc[ddddmmmmdddd]ccc22bb22ccc3	chr12:54676516-54676739(+)$1	223	60	100	16.3357
a!!==========!!cccmmmmccc]==========]a]g	chr1:178994929-178995246(+)$1	317	210	250	20.0441
eebb[bb"""ccc[ddddmmmmdddd]ccc4444bb]bb]	chr2:75884343-75884565(+)$1	222	39	79	15.4874
i!!a[iiiiiiiiiddddmmmmdddd333iiiiiiiiia2	chr21:46934152-46934502(-)$1	350	156	196	19.1105
=!!gggggggbb!!ddddmmmmdddd]bb4444ggggggg	chr2:27305850-27306178(+)$1	328	42	82	17.4305
==========ccc[ddddmmmmdddd]ccc333=======	chr5:134261489-134261772(+)$1	283	127	167	21.2549
=[================mmmm================]=	chr19:18881519-18881910(+)$1	391	140	180	20.5957
e::iiiiiiiii!!ddddmmmmddddiiiiiiiii:gggg	chr12:111798867-111799106(-)$1	239	139	179	16.0184
============[ddddnnnnndddd]=============	chr9:136719200-136719553(-)$1	353	233	273	18.9701
G==========="""cccmmmmccc333===========g	chr17:74077673-74077969(-)$1	296	18	58	20.0661
a[ccc!!a[gggggggooooooggggggg]a22ccc]a22	chr14:103523569-103523889(-)$1	320	247	287	13.8089
eeeee[bb[dddd[ddddmmmmdddd]dddd]bb]eeeee	chr14:53162290-53162535(-)$1	245	203	243	13.2920
ee4444ggggggg]dddd4444dddd]bb]==========	chr16:28962230-28962572(+)$1	342	173	213	14.2840
==="""============mmmm============333===	chr18:67279534-67279758(+)$1	224	122	162	20.2316
==========gggggggnnnnnggggggg4444=======	chr11:61109091-61109346(+)$1	255	0	40	16.7769

#otherMatches

#Seq PSSM
GGCAGGCAGACAUUUGACGGUAGUCAUUCUGUUGCCUAUA	chr7:137447790-137448004(-)$1	214	43	83	13.3874
GGGGAGCCCUUUCCUCUGGGGAUGGAGGAGAGGGGAGCUC	chr2:236874737-236875138(+)$1	401	25	65	18.9592
UGCGGGGCGGGGCGGGAGAGAAGGCUGCCGGGACCGGCCC	chr16:11036118-11036405(-)$1	287	159	199	13.5911
GAUGCUGGGAGGCAGGCAGAAGCUGGCUUUGGAACAUCUU	chr3:48451914-48452215(-)$1	301	38	78	14.6332
UUUCUCUGAGGGGGUGGGGGUGCCGCUCUCUCUGAGGGGG	chr13:113976997-113977272(+)$1	275	102	142	18.4300
GAGCUCCGCCAGGUCGCAGGGGAUGCGCCUGUGGAGCAGG	chr6:7246650-7246964(+)$1	314	98	138	13.3989
CCCCGAUUACAUUUCUAAGCGUGGCUGUGUGUGUGUGGUA	chr19:19039953-19040254(-)$1	301	220	260	14.0605
cugugugcacacguauguguccgcgugugugCACACAGGU	chr17:79111819-79112110(-)$1	291	193	233	21.5273
AGUGGGGCUGAGAGAUGUGGGGGCCCCUCCAGCCCCAUUA	chr10:135234405-135234672(+)$1	267	7	47	16.2114
ACACUCCCUGUGAGCCACGUGAAGGUGGACGGGGAGUGCU	chr21:47560315-47560573(-)$1	258	65	105	19.6169
CUUGACUUUCCAGAGGGUCCGUGGCUGUGGUCAUGGUCGG	chr17:80348085-80348362(-)$1	277	160	200	13.5484
AGGCAUUGGGGUGCUGGGUAAUGACCUCGGCCCUGGGUUU	chr7:6695700-6696013(+)$1	313	136	176	13.1436
gcccgggcggagccccggggAGUCGGCGCUGCUGGACGGG	chr10:101379997-101380270(-)$1	273	231	271	15.6348
AUGGUGACCCCUGGGUACGGGGGACUUGGGGGCCGCACCU	chr17:80348429-80348701(-)$1	272	90	130	16.3706
UGGACUCCACUUCCCGGCAGCGCCcgcgguggggcggggc	chr16:15149652-15149989(-)$1	337	13	53	14.3392
CUUACAgguggcuuugguggcagccgugguggugguggau	chr12:54676539-54676759(+)$1	220	37	77	16.3357
CUCGGGGUGGGGCCCGAGGGGGCGGGACCUCAAGGGGAGA	chr9:123630794-123631138(-)$1	344	171	211	13.1703
GCGCGACACUCGGGCUCGGGCGGCCGGGAAGCGACGGGAU	chr12:72148699-72148973(+)$1	274	172	212	13.5763
AGCUGUCCCGGGGUACAGAGAGCUGUCCCGGGGUGCGGUG	chr16:88559820-88560137(+)$1	317	192	232	14.4504
AAGGUGCCGGAGGUCUCAGGGGAGGGGCCUGGGGGCAGCG	chr19:18548043-18548314(-)$1	271	219	259	13.3114
ACGCAGUUCUUGGGUCUGUGCUGCUGGCCUGGGGUUGUGG	chr8:38853775-38854106(-)$1	331	74	114	15.5604
GGCAGGCUACUCCACUCGGCUCUGAGAGGAGUGGGGGCGG	chr14:24114406-24114675(+)$1	269	31	71	16.6284
GGGCAGGGGGUGGGGGGAGGGGUGCCAGGGCUUCCUGCGC	chr17:38247133-38247429(+)$1	296	230	270	17.2387
agugcauguaugugugcaggugcacaugggugugugugug	chr9:136719066-136719377(-)$1	311	6	46	13.4375
GUGCCAGCCUGAGACGGUUCCUGCCUGUCUUGGGGGUUGG	chr20:55984026-55984391(+)$1	365	37	77	16.2309
AGUGGGGCUGAGAGAUGUGGGGGCCCCUCCAGCCCCAUUA	chr10:135234292-135234590(+)$1	298	120	160	16.2114
GGUGGGCUGGGGAUCCUGGAGACAGCUGUACCCAUUUCUC	chr1:28864241-28864508(+)$1	267	52	92	14.2019
UUUACGCUCCCUGUGAGCAAUGUGAAGGCUGACGGGGAGU	chr21:47560645-47560865(-)$1	220	103	143	16.1987
ACGCUCCCUGUGAGCCACGUGAAGGUGGACGGGGAGUGCU	chr21:47560525-47560801(-)$1	276	92	132	19.6169
CUUCUCUGAAAGCCUUGGGAGACCAUUUCAGAGGAAGUGA	chr18:55997868-55998097(+)$1	229	89	129	13.9973
AAGCUGCUGGUCUGGGUGCUGCUGGCCUCCAAGCUGGCAG	chr9:136229521-136229788(-)$1	267	137	177	13.4936
UAGGCUGCGGCCCUUCACUGCUGUGCUGGGUUCCUGCAGC	chr2:128620786-128621102(-)$1	316	184	224	20.1632
CUUACAgguggcuuugguggcagccgugguggugguggau	chr12:54676516-54676739(+)$1	223	60	100	16.3357
uggggcugccccuccccggaggcggcgggggcggccgggg	chr1:178994929-178995246(+)$1	317	210	250	20.0441
ggcugucUUUAGGAUUAUCUGAAUGGGCUUUUUUGGGAGU	chr2:75884343-75884565(+)$1	222	39	79	15.4874
GGUCUCCCGAGGUGGCUCAGGGGAGCAGGCAUCUUGGGGU	chr21:46934152-46934502(-)$1	350	156	196	19.1105
CCCCUGGGGAGCAGGACUCUCAAGUCAGCGAGAUCCUCAG	chr2:27305850-27306178(+)$1	328	42	82	17.4305
CCGAUACGGUUGUAUAGGAUUGCUUGAAUAGCUGCUGUGU	chr5:134261489-134261772(+)$1	283	127	167	21.2549
gggugugggugugcaugcguggguguguacauuugugugc	chr19:18881519-18881910(+)$1	391	140	180	20.5957
UUGCUCUGGGGGAACAGUUGUCACUGCCCCCGGGGAGAGG	chr12:111798867-111799106(-)$1	239	139	179	16.0184
ugugugugugcagguacauggggugugugugcauaugcag	chr9:136719200-136719553(-)$1	353	233	273	18.9701
AGGGCACAGGGAGAUGCUCAGGGGCCAGUCCCUGUGUCUC	chr17:74077673-74077969(-)$1	296	18	58	20.0661
CGCGGACGGGGCGGCGAGGAGGCGCCGCUGCUGCCGGGGC	chr14:103523569-103523889(-)$1	320	247	287	13.8089
GGCCUGGGAGGCGGCCCGGAGGUGGGGCGCCGCUGGGGCC	chr14:53162290-53162535(-)$1	245	203	243	13.2920
CUGGGGCGGUCGGGGCCGGCGUCCUCGGGCCCAGCGGUCU	chr16:28962230-28962572(+)$1	342	173	213	14.2840
gcgagggcgcaugugugcgagggcgcaugugugcgagcgu	chr18:67279534-67279758(+)$1	224	122	162	20.2316
CCCCAGGGGUCUAGGGAGUGUAUCCCUGGGGGAGCUCCUG	chr11:61109091-61109346(+)$1	255	0	40	16.7769

#DB
(((((.((((....((((....)))).))))))))))...	chr7:137447790-137448004(-)$1	1	43	83	13.3874
(((...((((((((((((....))))))))))))...)))	chr2:236874737-236875138(+)$1	1	25	65	18.9592
).)(((.(((..(((.((......)).)))...))).)))	chr16:11036118-11036405(-)$1	1	159	199	13.5911
((((....(((((.(((....))).)))))....))))))	chr3:48451914-48452215(-)$1	1	38	78	14.6332
((((((.((((((((((.....)))))))))).)))))))	chr13:113976997-113977272(+)$1	1	102	142	18.4300
).(((((((.(((.((((.....))))))))))))))(((	chr6:7246650-7246964(+)$1	1	98	138	13.3989
((((((((((((..(..(((...)))..)...))))))).	chr19:19039953-19040254(-)$1	1	220	260	14.0605
((((((((((((..((((....))))))))))))))))))	chr17:79111819-79112110(-)$1	1	193	233	21.5273
((((((((((.(((..((....))..))))))))))))..	chr10:135234405-135234672(+)$1	1	7	47	16.2114
(((((((((((...((((......)))))))))))))).)	chr21:47560315-47560573(-)$1	1	65	105	19.6169
(((((((..(((.((.........)).)))....))))))	chr17:80348085-80348362(-)$1	1	160	200	13.5484
(((.(((.(((.(((((((....))).))))))).))).)	chr7:6695700-6696013(+)$1	1	136	176	13.1436
(((((..((((((.((((....)))).))).)))..))))	chr10:101379997-101380270(-)$1	1	231	271	15.6348
...(((.(((((((((.(....)))))))))).))).)))	chr17:80348429-80348701(-)$1	1	90	130	16.3706
(.(.(((((((..(.(((...))).).)))))))).))))	chr16:15149652-15149989(-)$1	1	13	53	14.3392
((..((....(((.((((....)))).)))..))..))).	chr12:54676539-54676759(+)$1	1	37	77	16.3357
(((....(((((((((......)))).)))))....))).	chr9:123630794-123631138(-)$1	1	171	211	13.1703
((....(..(((..(((((....)))))...)))..)...	chr12:72148699-72148973(+)$1	1	172	212	13.5763
.((((((((.(((.((((....))))))).))).))))).	chr16:88559820-88560137(+)$1	1	192	232	14.4504
..(.((((..(((((((......)))))))...)))).))	chr19:18548043-18548314(-)$1	1	219	259	13.3114
(((....(((((((((.((...)).))))))))).)))))	chr8:38853775-38854106(-)$1	1	74	114	15.5604
.((...(((((((.((((....)))).)))))))..)).)	chr14:24114406-24114675(+)$1	1	31	71	16.6284
(.(((((((((...((.(....).))...))))))))).)	chr17:38247133-38247429(+)$1	1	230	270	17.2387
.((((((((((((.((((.(((((((((.(..(.((((((	chr9:136719066-136719377(-)$1	1	6	46	13.4375
.(((((((((((((((((....))).)))))..)))))))	chr20:55984026-55984391(+)$1	1	37	77	16.2309
((((((((((.(((..((....))..))))))))))))..	chr10:135234292-135234590(+)$1	1	120	160	16.2114
((((((.((.((...(((....))))).))))))))).))	chr1:28864241-28864508(+)$1	1	52	92	14.2019
((((((((((((((.(((.........))).)))))))))	chr21:47560645-47560865(-)$1	1	103	143	16.1987
(((((((((((...((((......)))))))))))))).)	chr21:47560525-47560801(-)$1	1	92	132	19.6169
(((((((((((....(((....)))))))))).)))).))	chr18:55997868-55998097(+)$1	1	89	129	13.9973
..(((((((((.((((.(((...))).)))).))))))))	chr9:136229521-136229788(-)$1	1	137	177	13.4936
(((((((((((((..(((....)))..)))...)))))))	chr2:128620786-128621102(-)$1	1	184	224	20.1632
((..((....(((.((((....)))).)))..))..))).	chr12:54676516-54676739(+)$1	1	60	100	16.3357
(..((((((((((..(((....))).)))))))))).).)	chr1:178994929-178995246(+)$1	1	210	250	20.0441
((((.((...(((.((((....)))).)))....)).)).	chr2:75884343-75884565(+)$1	1	39	79	15.4874
(..(.(((((((((((((....))))...)))))))))).	chr21:46934152-46934502(-)$1	1	156	196	19.1105
(..(((((((((..((((....)))).))....)))))))	chr2:27305850-27306178(+)$1	1	42	82	17.4305
(((((((((((((.((((....)))).)))...)))))))	chr5:134261489-134261772(+)$1	1	127	167	21.2549
(.((((((((((((((((....)))))))))))))))).)	chr19:18881519-18881910(+)$1	1	140	180	20.5957
)..(((((((((..((((....))))))))))))).((((	chr12:111798867-111799106(-)$1	1	139	179	16.0184
((((((((((((.((((.....)))).)))))))))))))	chr9:136719200-136719553(-)$1	1	233	273	18.9701
((((((((((((...(((....)))...)))))))))))(	chr17:74077673-74077969(-)$1	1	18	58	20.0661
(.(((..(.(((((((......))))))).)..))).)..	chr14:103523569-103523889(-)$1	1	247	287	13.8089
(((((.((.((((.((((....)))).)))).)).)))))	chr14:53162290-53162535(-)$1	1	203	243	13.2920
))....))))))).))))....)))).)).))))))))))	chr16:28962230-28962572(+)$1	1	173	213	14.2840
(((...((((((((((((....))))))))))))...)))	chr18:67279534-67279758(+)$1	1	122	162	20.2316
(((((((((((((((((.....)))))))....)))))))	chr11:61109091-61109346(+)$1	1	0	40	16.7769

#PSSM
= : 0.25	c : 0.12	e : 0.12	f : 0.08	d : 0.06	i : 0.06	g : 0.04	[ : 0.04	: : 0.04	a : 0.04	# : 0.02	$ : 0.02	" : 0.02	b : 0.02	G : 0.02	
= : 0.25	e : 0.12	c : 0.10	i : 0.10	[ : 0.08	: : 0.06	! : 0.06	f : 0.04	g : 0.04	] : 0.02	# : 0.02	" : 0.02	b : 0.02	d : 0.02	
= : 0.27	i : 0.14	! : 0.10	c : 0.08	a : 0.06	g : 0.06	e : 0.06	f : 0.04	# : 0.04	b : 0.04	d : 0.02	: : 0.02	4 : 0.02	
= : 0.27	i : 0.17	" : 0.06	c : 0.06	g : 0.06	[ : 0.06	e : 0.06	# : 0.06	b : 0.04	! : 0.04	f : 0.02	d : 0.02	a : 0.02	4 : 0.02	
= : 0.27	i : 0.14	g : 0.10	c : 0.08	# : 0.08	" : 0.06	b : 0.06	e : 0.06	[ : 0.04	f : 0.02	d : 0.02	4 : 0.02	
= : 0.27	i : 0.17	g : 0.12	# : 0.08	" : 0.06	c : 0.06	b : 0.06	[ : 0.04	! : 0.04	e : 0.02	d : 0.02	4 : 0.02	
= : 0.29	i : 0.17	g : 0.14	# : 0.10	[ : 0.08	d : 0.04	c : 0.04	! : 0.04	b : 0.04	a : 0.02	
= : 0.31	i : 0.19	g : 0.14	c : 0.06	# : 0.06	d : 0.04	! : 0.04	b : 0.04	[ : 0.02	e : 0.02	" : 0.02	a : 0.02	
= : 0.31	i : 0.19	g : 0.14	c : 0.08	! : 0.06	e : 0.04	# : 0.04	[ : 0.04	d : 0.02	b : 0.02	" : 0.02	
= : 0.31	i : 0.19	g : 0.14	c : 0.10	[ : 0.06	d : 0.04	e : 0.04	# : 0.04	! : 0.02	" : 0.02	
= : 0.25	c : 0.23	g : 0.17	i : 0.12	e : 0.06	[ : 0.04	b : 0.04	# : 0.02	! : 0.02	d : 0.02	
c : 0.25	= : 0.21	g : 0.12	i : 0.08	e : 0.06	" : 0.06	# : 0.04	! : 0.04	[ : 0.04	b : 0.04	d : 0.02	
c : 0.23	= : 0.14	! : 0.12	" : 0.10	g : 0.10	d : 0.08	i : 0.06	# : 0.04	e : 0.04	[ : 0.04	
[ : 0.23	! : 0.14	= : 0.10	" : 0.10	d : 0.08	c : 0.06	i : 0.06	g : 0.06	# : 0.04	b : 0.02	a : 0.02	e : 0.02	] : 0.02	
d : 0.46	= : 0.08	! : 0.08	g : 0.06	c : 0.04	b : 0.04	i : 0.04	[ : 0.04	e : 0.04	" : 0.04	a : 0.02	# : 0.02	
d : 0.46	c : 0.19	= : 0.08	! : 0.06	g : 0.06	i : 0.04	[ : 0.02	r : 0.02	e : 0.02	b : 0.02	
d : 0.40	c : 0.21	= : 0.08	[ : 0.08	b : 0.06	o : 0.04	g : 0.04	! : 0.02	r : 0.02	e : 0.02	
d : 0.38	c : 0.23	b : 0.08	= : 0.06	n : 0.06	o : 0.06	a : 0.04	m : 0.02	r : 0.02	e : 0.02	
m : 0.57	o : 0.12	n : 0.08	c : 0.06	r : 0.04	l : 0.02	e : 0.02	b : 0.02	[ : 0.02	4 : 0.02	
m : 0.61	o : 0.12	n : 0.08	c : 0.04	r : 0.04	l : 0.04	i : 0.02	4 : 0.02	
m : 0.61	o : 0.12	n : 0.08	l : 0.08	r : 0.04	i : 0.02	4 : 0.02	
m : 0.59	o : 0.12	n : 0.08	l : 0.06	c : 0.04	r : 0.04	i : 0.02	4 : 0.02	
d : 0.34	c : 0.17	= : 0.08	o : 0.08	b : 0.06	l : 0.04	r : 0.04	m : 0.04	a : 0.04	g : 0.04	n : 0.02	i : 0.02	
d : 0.36	c : 0.23	= : 0.08	o : 0.06	b : 0.06	g : 0.06	r : 0.04	i : 0.04	e : 0.02	] : 0.02	
d : 0.40	c : 0.19	= : 0.08	b : 0.06	] : 0.06	g : 0.06	2 : 0.04	i : 0.04	e : 0.02	r : 0.02	
d : 0.40	= : 0.08	b : 0.08	g : 0.08	c : 0.06	2 : 0.06	i : 0.06	e : 0.04	] : 0.04	a : 0.02	r : 0.02	3 : 0.02	
] : 0.36	= : 0.12	i : 0.08	g : 0.08	e : 0.06	d : 0.06	c : 0.06	3 : 0.06	2 : 0.04	b : 0.02	r : 0.02	
c : 0.27	= : 0.14	d : 0.12	g : 0.12	e : 0.08	i : 0.08	3 : 0.06	b : 0.04	2 : 0.02	] : 0.02	
c : 0.27	= : 0.21	g : 0.12	d : 0.08	e : 0.06	i : 0.06	3 : 0.06	b : 0.06	a : 0.02	[ : 0.02	
= : 0.21	c : 0.21	i : 0.14	d : 0.08	g : 0.08	e : 0.06	] : 0.06	3 : 0.04	4 : 0.04	a : 0.02	b : 0.02	
= : 0.23	i : 0.14	3 : 0.12	4 : 0.10	g : 0.10	d : 0.08	] : 0.04	2 : 0.04	e : 0.04	c : 0.02	! : 0.02	a : 0.02	
= : 0.25	i : 0.14	3 : 0.10	4 : 0.10	g : 0.10	c : 0.08	2 : 0.08	] : 0.04	f : 0.02	e : 0.02	! : 0.02	
= : 0.23	i : 0.14	4 : 0.12	g : 0.10	3 : 0.08	c : 0.08	] : 0.06	b : 0.06	2 : 0.04	f : 0.02	a : 0.02	
= : 0.31	i : 0.17	c : 0.12	g : 0.12	4 : 0.08	b : 0.06	d : 0.04	f : 0.02	] : 0.02	[ : 0.02	
= : 0.27	i : 0.19	g : 0.10	2 : 0.10	c : 0.06	] : 0.06	3 : 0.04	d : 0.04	f : 0.02	a : 0.02	4 : 0.02	e : 0.02	b : 0.02	
= : 0.27	i : 0.17	g : 0.12	2 : 0.10	c : 0.08	3 : 0.04	e : 0.04	d : 0.04	f : 0.02	] : 0.02	4 : 0.02	b : 0.02	: : 0.02	
= : 0.25	i : 0.17	g : 0.14	] : 0.10	c : 0.08	e : 0.06	d : 0.06	3 : 0.04	f : 0.02	a : 0.02	b : 0.02	
= : 0.27	i : 0.17	c : 0.12	g : 0.10	e : 0.08	] : 0.06	4 : 0.04	b : 0.04	a : 0.04	h : 0.02	d : 0.02	
= : 0.21	] : 0.14	c : 0.12	g : 0.10	i : 0.08	e : 0.08	2 : 0.06	4 : 0.04	a : 0.04	b : 0.04	h : 0.02	d : 0.02	
= : 0.25	g : 0.12	2 : 0.10	c : 0.08	i : 0.08	e : 0.08	3 : 0.06	4 : 0.04	] : 0.04	b : 0.04	f : 0.02	h : 0.02	d : 0.02	

#score	764.3842294933891
#seq	47
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF358QSY_WDR43_transcript_m3_run2.txt

#BEAR
eeeeennnnneeeee	chrM:4359-4562(+)$1	203	0	15	11.2416
eeeeennnnneeeee	chr12:6619588-6619817(+)$1	229	26	41	11.2416
eeeeennnnneeeee	chrX:135961261-135961470(-)$1	209	106	121	11.2416
eeeeennnnneeeee	chr20:47896813-47897021(+)$1	208	150	165	11.2416
gggggoooooogggg	chr17:34171748-34172015(+)$1	267	145	160	7.1699
iiiiinnnnniiiii	chr1:150195411-150195668(-)$1	257	54	69	8.4383
fffffnnnnnfffff	chr16:70571843-70572100(+)$1	257	59	74	9.2040
eeeeennnnneeeee	chr17:56408718-56408967(-)$1	249	153	168	11.2416
gggggnnnnnggggg	chr16:28848265-28848530(+)$1	265	102	117	8.9949
fffffnnnnnfffff	chrM:4188-4428(+)$1	240	171	186	9.2040
fffffnnnnnfffff	chr11:93454813-93455057(+)$1	244	8	23	9.2040
ee[bbnnnnnbb]ee	chr11:17097223-17097432(-)$1	209	104	119	8.8672
ee[bbnnnnnbb]ee	chr11:17097255-17097470(-)$1	215	142	157	8.8672
fffffnnnnnfffff	chr2:97525522-97525809(-)$1	287	247	262	9.2040
fffffnnnnnfffff	chrM:4319-4541(+)$1	222	40	55	9.2040
eeeeennnnneeeee	chr19:3982404-3982652(-)$1	248	86	101	11.2416
eeeeeooooooeeee	chr2:203141071-203141334(+)$1	263	212	227	9.3067
eeeeeooooooeeee	chr11:122929519-122929730(-)$1	211	166	181	9.3067
eeeeeooooooeeee	chr17:19093316-19093602(-)$1	286	129	144	9.3067
eeeeennnnneeeee	chrX:135961254-135961461(-)$1	207	44	59	11.2416
eeeeennnnneeeee	chr1:173835915-173836166(-)$1	251	117	132	11.2416
eeeeennnnneeeee	chrX:135961270-135961484(-)$1	214	67	82	11.2416
fffffnnnnnfffff	chr7:158424080-158424350(-)$1	270	250	265	9.2040
eeeeennnnneeeee	chr11:93454891-93455142(+)$1	251	148	163	11.2416
fffffnnnnnfffff	chr11:62300140-62300427(-)$1	287	219	234	9.2040
eeeeennnnneeeee	chr9:134083156-134083434(+)$1	278	1	16	11.2416
[ddddnnnnndddd]	chr1:109642767-109642973(+)$1	206	47	62	7.6015
eeeeennnnneeeee	chr4:83816905-83817154(-)$1	249	209	224	11.2416
eeeeennnnneeeee	chr19:3053628-3053889(-)$1	261	183	198	11.2416
eeeeeooooooeeee	chr16:89033385-89033620(-)$1	235	3	18	9.3067
eeeeeooooooeeee	chr2:232319808-232320076(-)$1	268	14	29	9.3067
eeeeeooooooeeee	chr7:150067360-150067652(+)$1	292	217	232	9.3067
fffffnnnnnfffff	chr11:93454731-93455003(+)$1	272	90	105	9.2040
fffffnnnnnfffff	chr17:19091313-19091544(+)$1	231	187	202	9.2040
gggggoooooogggg	chr9:100777550-100777862(+)$1	312	80	95	7.1699
gggggoooooogggg	chr7:119432970-119433228(-)$1	258	88	103	7.1699
eeeeennnnneeeee	chr11:62284904-62285131(-)$1	227	36	51	11.2416
eeeeeooooooeeee	chr17:18965184-18965414(+)$1	230	125	140	9.3067
ee[bbnnnnnbb]ee	chr4:83816954-83817163(-)$1	209	117	132	8.8672
eeeeennnnneeeee	chr12:6619572-6619787(+)$1	215	42	57	11.2416
fffffnnnnnfffff	chrM:4341-4559(+)$1	218	18	33	9.2040
eeeeeooooooeeee	chr11:122929530-122929788(-)$1	258	224	239	9.3067
gggggnnnnnggggg	chr11:62290434-62290675(-)$1	241	23	38	8.9949
eeeeeooooooeeee	chr11:122929515-122929719(-)$1	204	155	170	9.3067
fffffnnnnnfffff	chr17:56080815-56081102(-)$1	287	86	101	9.2040
eeeeennnnneeeee	chr2:232321052-232321285(-)$1	233	8	23	11.2416
eeeeeooooooeeee	chr17:19091285-19091510(+)$1	225	128	143	9.3067
gggggnnnnnggggg	chr17:74557633-74557885(+)$1	252	212	227	8.9949
eeeeeooooooeeee	chr17:19091310-19091513(+)$1	203	146	161	9.3067
ee[bbnnnnnbb]ee	chr2:220403042-220403331(+)$1	289	123	138	8.8672
eeeeeooooooeeee	chr17:18965303-18965508(+)$1	205	49	64	9.3067
gggggoooooogggg	chr17:34171875-34172138(+)$1	263	18	33	7.1699

#otherMatches

#Seq PSSM
agaauccaaaauucu	chrM:4359-4562(+)$1	203	0	15	11.2416
GAACAGGGCAUGUUC	chr12:6619588-6619817(+)$1	229	26	41	11.2416
UGAGCUUUCUGUUUA	chrX:135961261-135961470(-)$1	209	106	121	11.2416
CCCAGCUCCCCUGGG	chr20:47896813-47897021(+)$1	208	150	165	11.2416
UAUGGAGGAGACCGU	chr17:34171748-34172015(+)$1	267	145	160	7.1699
AAAUCAUAUGGAUUU	chr1:150195411-150195668(-)$1	257	54	69	8.4383
UUUCACAGCCUGAAA	chr16:70571843-70572100(+)$1	257	59	74	9.2040
GGCCCAGGGCGGGCC	chr17:56408718-56408967(-)$1	249	153	168	11.2416
AAGAUCUUUUAUUUU	chr16:28848265-28848530(+)$1	265	102	117	8.9949
agaauccaaaauucu	chrM:4188-4428(+)$1	240	171	186	9.2040
CAUAUGUCUGgugug	chr11:93454813-93455057(+)$1	244	8	23	9.2040
ugaGCUUUAUGUGCA	chr11:17097223-17097432(-)$1	209	104	119	8.8672
ugaGCUUUAUGUGCA	chr11:17097255-17097470(-)$1	215	142	157	8.8672
CAGUGUAACUUAUUG	chr2:97525522-97525809(-)$1	287	247	262	9.2040
agaauccaaaauucu	chrM:4319-4541(+)$1	222	40	55	9.2040
GUGAUGACUGAUCAU	chr19:3982404-3982652(-)$1	248	86	101	11.2416
ugggcgugauggcuc	chr2:203141071-203141334(+)$1	263	212	227	9.3067
AGUAAUUUGUUUUAU	chr11:122929519-122929730(-)$1	211	166	181	9.3067
gagagguagcguuuu	chr17:19093316-19093602(-)$1	286	129	144	9.3067
UGAUUGCAUUGAUCG	chrX:135961254-135961461(-)$1	207	44	59	11.2416
CAGAAGGGAUUUCUG	chr1:173835915-173836166(-)$1	251	117	132	11.2416
UGAUUGCAUUGAUCG	chrX:135961270-135961484(-)$1	214	67	82	11.2416
GAAAAAACACUUUUC	chr7:158424080-158424350(-)$1	270	250	265	9.2040
CAACUGCUGGGGUUG	chr11:93454891-93455142(+)$1	251	148	163	11.2416
UCCGGGAAAACCGGA	chr11:62300140-62300427(-)$1	287	219	234	9.2040
UUCCAGAGAGUGGAG	chr9:134083156-134083434(+)$1	278	1	16	11.2416
GUUUUAGGGAGGGAG	chr1:109642767-109642973(+)$1	206	47	62	7.6015
GAAUGUUUUUCGUUU	chr4:83816905-83817154(-)$1	249	209	224	11.2416
CCAUAGUAUUUAUGG	chr19:3053628-3053889(-)$1	261	183	198	11.2416
GGCGCUGCCUCGUGU	chr16:89033385-89033620(-)$1	235	3	18	9.3067
CUGUGCCCUGUCACG	chr2:232319808-232320076(-)$1	268	14	29	9.3067
GAGAAGGGCUGUUCU	chr7:150067360-150067652(+)$1	292	217	232	9.3067
CAUAUGUCUGgugug	chr11:93454731-93455003(+)$1	272	90	105	9.2040
ucuccguauugggga	chr17:19091313-19091544(+)$1	231	187	202	9.2040
UUUGUUACUGUACag	chr9:100777550-100777862(+)$1	312	80	95	7.1699
uuuuccagaaagaaa	chr7:119432970-119433228(-)$1	258	88	103	7.1699
GGGACCCCAAGUCUC	chr11:62284904-62285131(-)$1	227	36	51	11.2416
gagagguagcguuuu	chr17:18965184-18965414(+)$1	230	125	140	9.3067
CAUCAUGAUUUGUUG	chr4:83816954-83817163(-)$1	209	117	132	8.8672
GAACAGGGCAUGUUC	chr12:6619572-6619787(+)$1	215	42	57	11.2416
agaauccaaaauucu	chrM:4341-4559(+)$1	218	18	33	9.2040
AGUAAUUUGUUUUAU	chr11:122929530-122929788(-)$1	258	224	239	9.3067
CGAUGCCUGACAUUG	chr11:62290434-62290675(-)$1	241	23	38	8.9949
AGUAAUUUGUUUUAU	chr11:122929515-122929719(-)$1	204	155	170	9.3067
AGAUGGUAAACAUUU	chr17:56080815-56081102(-)$1	287	86	101	9.2040
GCACAAAUUCUGUGU	chr2:232321052-232321285(-)$1	233	8	23	11.2416
gagagguagcguuuu	chr17:19091285-19091510(+)$1	225	128	143	9.3067
CAGCAUAUCCUGCUG	chr17:74557633-74557885(+)$1	252	212	227	8.9949
guugcuuggcugcaa	chr17:19091310-19091513(+)$1	203	146	161	9.3067
UUAGGGACAGCCAGG	chr2:220403042-220403331(+)$1	289	123	138	8.8672
guugcuuggcugcaa	chr17:18965303-18965508(+)$1	205	49	64	9.3067
UAUGGAGGAGACCGU	chr17:34171875-34172138(+)$1	263	18	33	7.1699

#DB
(((((.....)))))	chrM:4359-4562(+)$1	1	0	15	11.2416
(((((.....)))))	chr12:6619588-6619817(+)$1	1	26	41	11.2416
(((((.....)))))	chrX:135961261-135961470(-)$1	1	106	121	11.2416
(((((.....)))))	chr20:47896813-47897021(+)$1	1	150	165	11.2416
(((((......))))	chr17:34171748-34172015(+)$1	1	145	160	7.1699
(((((.....)))))	chr1:150195411-150195668(-)$1	1	54	69	8.4383
(((((.....)))))	chr16:70571843-70572100(+)$1	1	59	74	9.2040
(((((.....)))))	chr17:56408718-56408967(-)$1	1	153	168	11.2416
(((((.....)))))	chr16:28848265-28848530(+)$1	1	102	117	8.9949
(((((.....)))))	chrM:4188-4428(+)$1	1	171	186	9.2040
(((((.....)))))	chr11:93454813-93455057(+)$1	1	8	23	9.2040
((.((.....)).))	chr11:17097223-17097432(-)$1	1	104	119	8.8672
((.((.....)).))	chr11:17097255-17097470(-)$1	1	142	157	8.8672
(((((.....)))))	chr2:97525522-97525809(-)$1	1	247	262	9.2040
(((((.....)))))	chrM:4319-4541(+)$1	1	40	55	9.2040
(((((.....)))))	chr19:3982404-3982652(-)$1	1	86	101	11.2416
(((((......))))	chr2:203141071-203141334(+)$1	1	212	227	9.3067
(((((......))))	chr11:122929519-122929730(-)$1	1	166	181	9.3067
(((((......))))	chr17:19093316-19093602(-)$1	1	129	144	9.3067
(((((.....)))))	chrX:135961254-135961461(-)$1	1	44	59	11.2416
(((((.....)))))	chr1:173835915-173836166(-)$1	1	117	132	11.2416
(((((.....)))))	chrX:135961270-135961484(-)$1	1	67	82	11.2416
(((((.....)))))	chr7:158424080-158424350(-)$1	1	250	265	9.2040
(((((.....)))))	chr11:93454891-93455142(+)$1	1	148	163	11.2416
(((((.....)))))	chr11:62300140-62300427(-)$1	1	219	234	9.2040
(((((.....)))))	chr9:134083156-134083434(+)$1	1	1	16	11.2416
.((((.....)))).	chr1:109642767-109642973(+)$1	1	47	62	7.6015
(((((.....)))))	chr4:83816905-83817154(-)$1	1	209	224	11.2416
(((((.....)))))	chr19:3053628-3053889(-)$1	1	183	198	11.2416
(((((......))))	chr16:89033385-89033620(-)$1	1	3	18	9.3067
(((((......))))	chr2:232319808-232320076(-)$1	1	14	29	9.3067
(((((......))))	chr7:150067360-150067652(+)$1	1	217	232	9.3067
(((((.....)))))	chr11:93454731-93455003(+)$1	1	90	105	9.2040
(((((.....)))))	chr17:19091313-19091544(+)$1	1	187	202	9.2040
(((((......))))	chr9:100777550-100777862(+)$1	1	80	95	7.1699
(((((......))))	chr7:119432970-119433228(-)$1	1	88	103	7.1699
(((((.....)))))	chr11:62284904-62285131(-)$1	1	36	51	11.2416
(((((......))))	chr17:18965184-18965414(+)$1	1	125	140	9.3067
((.((.....)).))	chr4:83816954-83817163(-)$1	1	117	132	8.8672
(((((.....)))))	chr12:6619572-6619787(+)$1	1	42	57	11.2416
(((((.....)))))	chrM:4341-4559(+)$1	1	18	33	9.2040
(((((......))))	chr11:122929530-122929788(-)$1	1	224	239	9.3067
(((((.....)))))	chr11:62290434-62290675(-)$1	1	23	38	8.9949
(((((......))))	chr11:122929515-122929719(-)$1	1	155	170	9.3067
(((((.....)))))	chr17:56080815-56081102(-)$1	1	86	101	9.2040
(((((.....)))))	chr2:232321052-232321285(-)$1	1	8	23	11.2416
(((((......))))	chr17:19091285-19091510(+)$1	1	128	143	9.3067
(((((.....)))))	chr17:74557633-74557885(+)$1	1	212	227	8.9949
(((((......))))	chr17:19091310-19091513(+)$1	1	146	161	9.3067
((.((.....)).))	chr2:220403042-220403331(+)$1	1	123	138	8.8672
(((((......))))	chr17:18965303-18965508(+)$1	1	49	64	9.3067
(((((......))))	chr17:34171875-34172138(+)$1	1	18	33	7.1699

#PSSM
e : 0.61	f : 0.21	g : 0.13	i : 0.01	[ : 0.01	
e : 0.61	f : 0.21	g : 0.13	i : 0.01	d : 0.01	
e : 0.53	f : 0.21	g : 0.13	[ : 0.07	i : 0.01	d : 0.01	
e : 0.53	f : 0.21	g : 0.13	b : 0.07	i : 0.01	d : 0.01	
e : 0.53	f : 0.21	g : 0.13	b : 0.07	i : 0.01	d : 0.01	
n : 0.69	o : 0.30	
n : 0.69	o : 0.30	
n : 0.69	o : 0.30	
n : 0.69	o : 0.30	
n : 0.69	o : 0.30	
e : 0.30	o : 0.30	f : 0.21	b : 0.07	g : 0.05	i : 0.01	d : 0.01	
e : 0.53	f : 0.21	g : 0.13	b : 0.07	i : 0.01	d : 0.01	
e : 0.53	f : 0.21	g : 0.13	] : 0.07	i : 0.01	d : 0.01	
e : 0.61	f : 0.21	g : 0.13	i : 0.01	d : 0.01	
e : 0.61	f : 0.21	g : 0.13	i : 0.01	] : 0.01	

#score	499.966231944062
#seq	52
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_transcript_m3_run2.txt

#BEAR
c"""ddddffffffmmmmffffff333dddd	chr16:88797965-88798191(-)$1	226	117	148	10.3979
d!!eeeee[eeeeemmmmeeeee22eeeee3	chr19:36562518-36562766(+)$1	248	52	83	10.1640
:eeeee[gggggggmmmmggggggg]eeeee	chr17:17127068-17127338(-)$1	270	37	68	11.2053
b[a[dddd####bbmmmmbb333dddd]a]b	chr1:160326259-160326495(+)$1	236	193	224	11.7180
=========!!ccclllccc==========]	chr10:94451904-94452151(+)$1	247	159	190	13.5839
d!!ccc$$$$$cccmmmmccc22ccc]dddd	chr1:33116818-33117025(+)$1	207	171	202	12.3176
eee!!ffffff[aammmma]a]ffffffeee	chr21:47862392-47862630(+)$1	238	96	127	11.7187
ddd!!iiiiiiiiimmmmiiiiiiiii22dd	chr1:160321895-160322138(+)$1	243	89	120	12.7530
[cccffffff!!bbmmmmbb]ffffff4444	chr22:22899125-22899330(-)$1	205	49	80	11.0280
f!!ccc[ccc[cccmmmmccc]ccc22ccc2	chr21:47666251-47666481(-)$1	230	184	215	13.3321
eebb!!eeeeecccmmmmccc22eeeeebb]	chr3:49728718-49728959(+)$1	241	205	236	11.1224
====ccc[a[ddddmmmmdddd22a]ccc]=	chr3:12963445-12963720(-)$1	275	200	231	11.7000
eeee####ffffffmmmmffffff22eeeee	chr11:10524341-10524607(+)$1	266	118	149	10.3176
dddd!!ccc!!cccmmmmccc]ccc22dddd	chr16:84806216-84806433(+)$1	217	167	198	12.9798
iiiiiiiii[eeeeellleeeee]iiiiiii	chr1:156305420-156305715(-)$1	295	15	46	10.2006
ee"""ccc"""cccmmmmccc333ccceeee	chr2:86705123-86705375(+)$1	252	17	48	14.4814
"ccc!!eeeeea[ammmma]a]eeeee22cc	chr1:22199675-22199951(-)$1	276	239	270	11.5362
bb!!dddd[a[ccclllccca]dddd333bb	chr1:16770125-16770351(+)$1	226	112	143	10.0002
[eeeee[ccc!!bbmmmmbb22ccc]eeeee	chr5:111496891-111497096(+)$1	205	38	69	12.1001
gggg[bb####ccclllccc333bbgggggg	chr2:182757285-182757560(+)$1	275	153	184	11.6164
::============mmmm============d	chr20:57562780-57563047(+)$1	267	82	113	12.5224
ee==========[ammmma]==========]	chr11:71159157-71159436(-)$1	279	152	183	14.4762
%iiiiiiiii[ccclllccciiiiiiiii]d	chr4:107237658-107237899(+)$1	241	92	123	11.9874
b!!dddd[ccc[bbmmmmbb]ccc]ddddbb	chr1:150526845-150527058(+)$1	213	147	178	10.4418
%ggggggg[eeeeemmmmeeeee333ggggg	chr7:155465450-155465751(+)$1	301	219	250	11.2358
"""ggggggg!!aooooooa22ggggggg]b	chr17:17119549-17119767(-)$1	218	36	67	11.1304
ffffff[ccc[cccmmmmccc]cccffffff	chr7:150771359-150771571(+)$1	212	134	165	12.2294
hiiiiiiiii[cccmmmmccc]iiiiiiiii	chr9:139328299-139328542(-)$1	243	119	150	14.7221
======="""ddddllldddd22========	chr6:31668602-31668818(-)$1	216	181	212	11.5071
[ffffff####cccmmmmcccffffff]ccc	chr21:45742850-45743063(+)$1	213	70	101	12.4793
ccc[==========mmmm==========]cc	chr5:228318-228597(+)$1	279	186	217	14.1465
=========!!cccmmmmccc]=========	chr8:21959261-21959525(+)$1	264	159	190	15.8184
eee####gggggggmmmmggggggg4444ee	chr17:1562713-1562973(-)$1	260	156	187	12.3968
ggggggg[ccc[bbmmmmbb]ccc]gggggg	chr22:24032407-24032686(-)$1	279	99	130	12.5571
##eeeee[dddd[ammmma]dddd]eeeee4	chr21:44478801-44479022(-)$1	221	22	53	10.4799
hhhhhhhh"""cccmmmmccc333hhhhhhh	chr1:55183225-55183506(+)$1	281	106	137	11.8259
ffa[dddd[ccc[ammmma]cccdddd333a	chr17:80152922-80153218(-)$1	296	246	277	11.3653
"""ggggggg[cccmmmmcccggggggg]ff	chr15:28459691-28459901(-)$1	210	74	105	14.0180
eeee!!ccc[ddddmmmmdddd]ccc22eee	chr18:3604160-3604425(+)$1	265	113	144	11.3866
FFF:gggggggcccmmmmccc333ggggggg	chr22:29195001-29195257(-)$1	256	26	57	11.6605
!!ddddccc[cccooooooccc]ccc22ddd	chr16:89653334-89653545(+)$1	211	157	188	9.9563
[a!!ffffff[cccmmmmccc333ffffff2	chr15:98508796-98509073(+)$1	277	191	222	12.9760
===!!bb[a[ddddmmmmddddabb]=====	chr15:49913219-49913424(+)$1	205	141	172	11.6507
ee####ccc!!cccmmmmccc]ccc333eee	chr17:38560892-38561135(-)$1	243	56	87	14.4487
!ggggggg!!bb[ammmmabbgggggggccc	chr1:31214441-31214692(-)$1	251	46	77	12.6163
gg####eeeee[ccclllccc]eeeeegggg	chr19:2120720-2120957(-)$1	237	152	183	10.5201
dd=============lll=============	chr1:145438993-145439213(+)$1	220	136	167	12.7445
=========cccbbmmmmbb]ccc22=====	chr6:160509078-160509321(+)$1	243	181	212	13.2740
dddd"""gggggggmmmmgggggggddddcc	chr12:120592935-120593144(-)$1	209	139	170	11.4201
cceeeee####cccmmmmccceeeee22ccc	chr11:65631303-65631564(+)$1	261	19	50	12.3211
hhh[ggggggg[bbmmmmbbggggggg]hhh	chr16:18844157-18844362(-)$1	205	117	148	11.8686
"""ffffff"""bbmmmmbb333ffffff22	chr10:81917242-81917497(-)$1	255	119	150	11.8058
eeee[ccc"""cccmmmmccc333ccc]eee	chr21:47953466-47953698(+)$1	232	141	172	14.3201
a[bb[ccc[ccc[aooooooa]ccc]ccc]b	chr21:45219456-45219675(+)$1	219	39	70	10.2264

#otherMatches

#Seq PSSM
CUUUGUGGAUGCCCGUGGGGGUGUUUCCCGC	chr16:88797965-88798191(-)$1	226	117	148	10.3979
CAAGCCACACUACCUUGGGGUAGACGUGGCA	chr19:36562518-36562766(+)$1	248	52	83	10.1640
UCCUGGCCCUUCCUGCUGGGGAAGGUCCGGG	chr17:17127068-17127338(-)$1	270	37	68	11.2053
AGUAUGCCUUGGCAAAUUUGACUGGCACAGU	chr1:160326259-160326495(+)$1	236	193	224	11.7180
CUCUGGGGUCUGGCCAGGCCGCUCCAGGGCA	chr10:94451904-94452151(+)$1	247	159	190	13.5839
CCUAACAGUGAGGGCAGGCCCGAGUUUGCCG	chr1:33116818-33117025(+)$1	207	171	202	12.3176
GGGACUCCAGCUGCUGUUGACCGCUGGACUC	chr21:47862392-47862630(+)$1	238	96	127	11.7187
UUCUUUCAAGGGGUAAGGGCUCUUUGGCUGG	chr1:160321895-160322138(+)$1	243	89	120	12.7530
GUCCUGAGGCCAGCCUAAGUCGCUUCAAAAU	chr22:22899125-22899330(-)$1	205	49	80	11.0280
UUUCAGCUAAGCUGAUUUCAGAUUACACUGU	chr21:47666251-47666481(-)$1	230	184	215	13.3321
CCCCAGCAGCCACCAGCAGGUAUGGCUGGGU	chr3:49728718-49728959(+)$1	241	205	236	11.1224
UAGACAGGGCCAGGUGUCCCUGAAUGUUGCU	chr3:12963445-12963720(-)$1	275	200	231	11.7000
GGACAGUAGUGCUUCAGUAGGCACCAGUCCU	chr11:10524341-10524607(+)$1	266	118	149	10.3176
UGAGGACAUUCUCUUGCUGGACGUGGACUUG	chr16:84806216-84806433(+)$1	217	167	198	12.9798
UUGUGUUUUUGUCUAUUUUAGGCCAGAACAC	chr1:156305420-156305715(-)$1	295	15	46	10.2006
AUUGCCAACAGGGUGAGAACCGAUUUGAUUC	chr2:86705123-86705375(+)$1	252	17	48	14.4814
gcugucgugagaguGUUGAGUACUCACAUCA	chr1:22199675-22199951(-)$1	276	239	270	11.5362
GGGAGGCUGCAUCAAGCUGAGGGGCCGCACC	chr1:16770125-16770351(+)$1	226	112	143	10.0002
GCGUGCCUGGUUACAGCUGUUUCCACGUGCG	chr5:111496891-111497096(+)$1	205	38	69	12.1001
ACGCCGGAGCAGAGCCACUCGGGCCGCGUCC	chr2:182757285-182757560(+)$1	275	153	184	11.6164
AGAAGGAGAGGUGAGAAAUUAUUUUUCUUUG	chr20:57562780-57563047(+)$1	267	82	113	12.5224
GGGGGCGCUUGCCCAGGUGAGCAGGUGCCCA	chr11:71159157-71159436(-)$1	279	152	183	14.4762
UGUGAGUGACGUCGUGGCGGGUCACUCACUC	chr4:107237658-107237899(+)$1	241	92	123	11.9874
GAAGGGGAGAGGAGAUACCUGCUUACUCCCA	chr1:150526845-150527058(+)$1	213	147	178	10.4418
GCAGUAAUCACUUAUACAUGGGUUUCAUUAC	chr7:155465450-155465751(+)$1	301	219	250	11.2358
CCCGCACGUGCAGAUCCCCCCCCACGUGCUC	chr17:17119549-17119767(-)$1	218	36	67	11.1304
GGUGAUUGGGGACUUUGGGGUGCCCAUCGCC	chr7:150771359-150771571(+)$1	212	134	165	12.2294
GAGACCUGUGGUCAUGGCUGGGCACGGGUCU	chr9:139328299-139328542(-)$1	243	119	150	14.7221
UAGUGAUGGGCCUCCGAGAGGGAAUCAUUGA	chr6:31668602-31668818(-)$1	216	181	212	11.5071
GGUGGGUUUGAGGUGAGAGCUGCCCACGGAC	chr21:45742850-45743063(+)$1	213	70	101	12.4793
AGUUUCUUUAUUUUAAUGAAAAUAGAGGCAU	chr5:228318-228597(+)$1	279	186	217	14.1465
AGCAGAGGUUGGCCACAGGGUUGCCUCUGCU	chr8:21959261-21959525(+)$1	264	159	190	15.8184
CAGAAAUACUGGAUUGACAUCCAGUUGCGCU	chr17:1562713-1562973(-)$1	260	156	187	12.3968
UUAAAGGUAUAUGAUUGUUUUUGUUCCUUUA	chr22:24032407-24032686(-)$1	279	99	130	12.5571
CAUCGAGAUCCUCCGGGAGAAGGGCUUCGAC	chr21:44478801-44479022(-)$1	221	22	53	10.4799
UUAUAAGUGCUUUCUGAAGAAUAAACUUAUG	chr1:55183225-55183506(+)$1	281	106	137	11.8259
CCCAUGGCAGGGUGGGCACUCCCGUCAAAGG	chr17:80152922-80153218(-)$1	296	246	277	11.3653
GCUCCUCUGACGUGCCAUUACUCAGAGGUGG	chr15:28459691-28459901(-)$1	210	74	105	14.0180
GUGGAGUCUUGUGCCUAAGUGCUAGAGCCCA	chr18:3604160-3604425(+)$1	265	113	144	11.3866
AAAAUGAAAGCACCAGCUGGUAAAGUUUUCA	chr22:29195001-29195257(-)$1	256	26	57	11.6605
CUGCCAGAUCCACUUCACCGUGAGUCCAUGG	chr16:89653334-89653545(+)$1	211	157	188	9.9563
UGCAUGUUUACACUGAAUAGUCCCUAAAUAG	chr15:98508796-98509073(+)$1	277	191	222	12.9760
UCUCUGGAGACCAGUGGUCUGGCCCCAGAGG	chr15:49913219-49913424(+)$1	205	141	172	11.6507
GGAUAGAAGACAACGAAAGUUACUUGGGCUU	chr17:38560892-38561135(-)$1	243	56	87	14.4487
UGGUUCCCCAAGUGUGGUCCUGGGAGCCUGG	chr1:31214441-31214692(-)$1	251	46	77	12.6163
GGACCAGGGAUGUGCCUGGCAGAUCCUUCCU	chr19:2120720-2120957(-)$1	237	152	183	10.5201
GUUUUAAGUUGCUCAGUUUGAGUGGUUUGAA	chr1:145438993-145439213(+)$1	220	136	167	12.7445
GUUUUGGCUGAGUCUUAGGAGCUCAGGGCCA	chr6:160509078-160509321(+)$1	243	181	212	13.2740
GCGGUUGGGUGGGUCUCUGCUCACCCCGCUA	chr12:120592935-120593144(-)$1	209	139	170	11.4201
UGGAUGACCUUUGCAGCAGCAUCAUCGACGG	chr11:65631303-65631564(+)$1	261	19	50	12.3211
UGUGCCGUUUCCUUGUAAAAGAGAUGGGACA	chr16:18844157-18844362(-)$1	205	117	148	11.8686
CCAACUGGGCUCCCUUUUGGCAUCUCAGUCA	chr10:81917242-81917497(-)$1	255	119	150	11.8058
UGUUAAAUGCAUGGUGUUCCAGAAAUUAAAC	chr21:47953466-47953698(+)$1	232	141	172	14.3201
GUGACGACAGGGACAGUGGCGGCCCCGUUCU	chr21:45219456-45219675(+)$1	219	39	70	10.2264

#DB
(...((((((((((....))))))...))))	chr16:88797965-88798191(-)$1	1	117	148	10.3979
(..(((((.(((((....)))))..))))).	chr19:36562518-36562766(+)$1	1	52	83	10.1640
.(((((.(((((((....))))))).)))))	chr17:17127068-17127338(-)$1	1	37	68	11.2053
(.(.((((....((....))...)))).).)	chr1:160326259-160326495(+)$1	1	193	224	11.7180
(((((((((..(((...))))))))))))).	chr10:94451904-94452151(+)$1	1	159	190	13.5839
(..(((.....(((....)))..))).))))	chr1:33116818-33117025(+)$1	1	171	202	12.3176
(((..((((((.((....).).)))))))))	chr21:47862392-47862630(+)$1	1	96	127	11.7187
(((..(((((((((....)))))))))..))	chr1:160321895-160322138(+)$1	1	89	120	12.7530
.(((((((((..((....)).))))))....	chr22:22899125-22899330(-)$1	1	49	80	11.0280
(..(((.(((.(((....))).)))..))).	chr21:47666251-47666481(-)$1	1	184	215	13.3321
((((..((((((((....)))..))))))).	chr3:49728718-49728959(+)$1	1	205	236	11.1224
(((((((.(.((((....))))..).))).)	chr3:12963445-12963720(-)$1	1	200	231	11.7000
((((....((((((....))))))..)))))	chr11:10524341-10524607(+)$1	1	118	149	10.3176
((((..(((..(((....))).)))..))))	chr16:84806216-84806433(+)$1	1	167	198	12.9798
(((((((((.(((((...))))).)))))))	chr1:156305420-156305715(-)$1	1	15	46	10.2006
((...(((...(((....)))...)))))))	chr2:86705123-86705375(+)$1	1	17	48	14.4814
.(((..((((((.(....).).)))))..))	chr1:22199675-22199951(-)$1	1	239	270	11.5362
((..((((.(.(((...)))).))))...))	chr1:16770125-16770351(+)$1	1	112	143	10.0002
.(((((.(((..((....))..))).)))))	chr5:111496891-111497096(+)$1	1	38	69	12.1001
((((.((....(((...)))...))))))))	chr2:182757285-182757560(+)$1	1	153	184	11.6164
..((((((((((((....))))))))))))(	chr20:57562780-57563047(+)$1	1	82	113	12.5224
((((((((((((.(....).)))))))))).	chr11:71159157-71159436(-)$1	1	152	183	14.4762
.(((((((((.(((...)))))))))))).)	chr4:107237658-107237899(+)$1	1	92	123	11.9874
(..((((.(((.((....)).))).))))))	chr1:150526845-150527058(+)$1	1	147	178	10.4418
.(((((((.(((((....)))))...)))))	chr7:155465450-155465751(+)$1	1	219	250	11.2358
...(((((((..(......)..))))))).)	chr17:17119549-17119767(-)$1	1	36	67	11.1304
((((((.(((.(((....))).)))))))))	chr7:150771359-150771571(+)$1	1	134	165	12.2294
((((((((((.(((....))).)))))))))	chr9:139328299-139328542(-)$1	1	119	150	14.7221
(((((((...((((...))))..))))))))	chr6:31668602-31668818(-)$1	1	181	212	11.5071
.((((((....(((....))))))))).)))	chr21:45742850-45743063(+)$1	1	70	101	12.4793
(((.((((((((((....)))))))))).))	chr5:228318-228597(+)$1	1	186	217	14.1465
(((((((((..(((....))).)))))))))	chr8:21959261-21959525(+)$1	1	159	190	15.8184
(((....(((((((....)))))))....))	chr17:1562713-1562973(-)$1	1	156	187	12.3968
(((((((.(((.((....)).))).))))))	chr22:24032407-24032686(-)$1	1	99	130	12.5571
..(((((.((((.(....).)))).))))).	chr21:44478801-44479022(-)$1	1	22	53	10.4799
((((((((...(((....)))...)))))))	chr1:55183225-55183506(+)$1	1	106	137	11.8259
(((.((((.(((.(....).)))))))...)	chr17:80152922-80153218(-)$1	1	246	277	11.3653
...(((((((.(((....)))))))))).))	chr15:28459691-28459901(-)$1	1	74	105	14.0180
((((..(((.((((....)))).)))..)))	chr18:3604160-3604425(+)$1	1	113	144	11.3866
(((.((((((((((....)))...)))))))	chr22:29195001-29195257(-)$1	1	26	57	11.6605
..(((((((.(((......))).)))..)))	chr16:89653334-89653545(+)$1	1	157	188	9.9563
.(..((((((.(((....)))...)))))).	chr15:98508796-98509073(+)$1	1	191	222	12.9760
(((..((.(.((((....))))))).)))))	chr15:49913219-49913424(+)$1	1	141	172	11.6507
((....(((..(((....))).)))...)))	chr17:38560892-38561135(-)$1	1	56	87	14.4487
.(((((((..((.(....)))))))))))))	chr1:31214441-31214692(-)$1	1	46	77	12.6163
((....(((((.(((...))).)))))))))	chr19:2120720-2120957(-)$1	1	152	183	10.5201
(((((((((((((((...)))))))))))))	chr1:145438993-145439213(+)$1	1	136	167	12.7445
((((((((((((((....)).)))..)))))	chr6:160509078-160509321(+)$1	1	181	212	13.2740
((((...(((((((....)))))))))))))	chr12:120592935-120593144(-)$1	1	139	170	11.4201
(((((((....(((....))))))))..)))	chr11:65631303-65631564(+)$1	1	19	50	12.3211
(((.(((((((.((....))))))))).)))	chr16:18844157-18844362(-)$1	1	117	148	11.8686
...((((((...((....))...))))))..	chr10:81917242-81917497(-)$1	1	119	150	11.8058
((((.(((...(((....)))...))).)))	chr21:47953466-47953698(+)$1	1	141	172	14.3201
(.((.(((.(((.(......).))).))).)	chr21:45219456-45219675(+)$1	1	39	70	10.2264

#PSSM
e : 0.16	d : 0.11	= : 0.11	[ : 0.07	" : 0.07	c : 0.05	b : 0.05	f : 0.05	g : 0.05	h : 0.05	: : 0.03	% : 0.03	! : 0.03	i : 0.01	# : 0.01	F : 0.01	a : 0.01	
e : 0.20	= : 0.11	! : 0.09	g : 0.09	" : 0.07	d : 0.07	c : 0.07	i : 0.05	f : 0.05	[ : 0.03	h : 0.03	b : 0.01	: : 0.01	# : 0.01	F : 0.01	a : 0.01	
e : 0.16	= : 0.16	! : 0.11	" : 0.09	d : 0.07	g : 0.07	c : 0.05	i : 0.05	a : 0.03	b : 0.03	f : 0.03	h : 0.03	# : 0.03	F : 0.01	
e : 0.14	= : 0.14	g : 0.11	! : 0.09	[ : 0.07	c : 0.07	d : 0.07	i : 0.05	f : 0.05	# : 0.05	" : 0.03	b : 0.03	h : 0.01	: : 0.01	
= : 0.14	! : 0.12	g : 0.12	d : 0.11	e : 0.09	f : 0.09	# : 0.07	c : 0.05	i : 0.05	[ : 0.05	" : 0.03	h : 0.01	
= : 0.14	g : 0.12	d : 0.11	c : 0.11	f : 0.11	e : 0.09	i : 0.07	! : 0.07	# : 0.07	b : 0.03	h : 0.01	" : 0.01	
= : 0.14	c : 0.14	g : 0.12	e : 0.11	d : 0.09	f : 0.09	[ : 0.07	i : 0.07	# : 0.03	b : 0.03	$ : 0.01	h : 0.01	" : 0.01	
c : 0.18	g : 0.16	= : 0.12	[ : 0.09	d : 0.07	e : 0.07	f : 0.07	i : 0.07	# : 0.07	$ : 0.01	" : 0.01	h : 0.01	
c : 0.16	g : 0.12	= : 0.12	f : 0.11	[ : 0.09	# : 0.07	i : 0.07	" : 0.07	e : 0.05	a : 0.03	$ : 0.01	d : 0.01	! : 0.01	
c : 0.14	g : 0.12	f : 0.09	e : 0.09	! : 0.09	[ : 0.09	" : 0.09	# : 0.07	= : 0.07	i : 0.05	$ : 0.01	a : 0.01	d : 0.01	
! : 0.12	[ : 0.12	e : 0.11	c : 0.11	g : 0.09	d : 0.09	# : 0.07	" : 0.07	= : 0.07	f : 0.05	$ : 0.01	i : 0.01	b : 0.01	
c : 0.44	[ : 0.09	d : 0.09	= : 0.07	e : 0.05	g : 0.05	! : 0.05	f : 0.03	# : 0.01	i : 0.01	a : 0.01	b : 0.01	" : 0.01	
c : 0.40	b : 0.14	[ : 0.11	d : 0.07	e : 0.05	g : 0.05	= : 0.05	f : 0.03	a : 0.03	i : 0.01	
c : 0.38	b : 0.14	a : 0.12	d : 0.07	e : 0.05	g : 0.05	= : 0.05	f : 0.03	o : 0.03	i : 0.01	
m : 0.79	l : 0.09	o : 0.05	e : 0.01	c : 0.01	= : 0.01	
m : 0.79	l : 0.14	o : 0.05	
m : 0.79	l : 0.14	o : 0.05	
m : 0.79	c : 0.07	l : 0.05	o : 0.05	d : 0.01	
c : 0.38	b : 0.14	a : 0.11	d : 0.07	e : 0.05	g : 0.05	= : 0.05	o : 0.05	f : 0.03	i : 0.01	
c : 0.40	b : 0.16	] : 0.09	d : 0.07	e : 0.05	g : 0.05	= : 0.05	f : 0.03	i : 0.01	a : 0.01	o : 0.01	
c : 0.35	= : 0.09	d : 0.09	g : 0.07	a : 0.07	] : 0.07	e : 0.05	3 : 0.05	f : 0.03	i : 0.03	2 : 0.03	b : 0.01	
] : 0.20	3 : 0.14	g : 0.11	= : 0.09	2 : 0.09	c : 0.09	f : 0.07	e : 0.07	d : 0.07	i : 0.03	
c : 0.18	3 : 0.14	g : 0.12	e : 0.11	= : 0.11	f : 0.09	2 : 0.07	i : 0.05	d : 0.03	] : 0.03	a : 0.01	
c : 0.22	g : 0.12	= : 0.12	f : 0.11	3 : 0.11	d : 0.07	e : 0.07	i : 0.05	2 : 0.03	b : 0.03	] : 0.01	
c : 0.20	g : 0.14	= : 0.12	f : 0.09	i : 0.07	e : 0.07	2 : 0.05	d : 0.05	] : 0.05	3 : 0.03	b : 0.03	a : 0.01	h : 0.01	
= : 0.12	g : 0.12	e : 0.11	f : 0.11	] : 0.09	d : 0.09	c : 0.09	i : 0.07	2 : 0.07	3 : 0.05	4 : 0.01	h : 0.01	
= : 0.16	e : 0.14	g : 0.14	f : 0.11	2 : 0.09	d : 0.07	i : 0.07	c : 0.07	3 : 0.05	] : 0.01	4 : 0.01	h : 0.01	
= : 0.16	g : 0.14	e : 0.12	d : 0.09	2 : 0.09	] : 0.07	f : 0.07	c : 0.05	i : 0.05	3 : 0.05	4 : 0.03	h : 0.01	
e : 0.18	= : 0.14	d : 0.11	c : 0.11	g : 0.11	i : 0.05	f : 0.05	2 : 0.03	4 : 0.03	3 : 0.03	] : 0.03	h : 0.03	a : 0.01	b : 0.01	
e : 0.20	= : 0.14	c : 0.12	d : 0.09	] : 0.09	g : 0.09	b : 0.05	f : 0.05	i : 0.03	h : 0.03	4 : 0.01	3 : 0.01	2 : 0.01	
e : 0.16	d : 0.12	= : 0.11	c : 0.11	b : 0.09	g : 0.09	] : 0.05	2 : 0.05	4 : 0.03	i : 0.03	f : 0.03	h : 0.03	3 : 0.01	a : 0.01	

#score	652.8121753499704
#seq	54
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF036IYW_NSUN2_CDS_m2_run2.txt

#BEAR
HHHHHHH::ccc[ccc!!ddddpppppppdddd22ccc]c	chr12:99080544-99080748(+)$1	204	51	91	42.1219
HHHHHHH::ccc[ccc!!ddddpppppppdddd22ccc]c	chr12:99080533-99080744(+)$1	211	62	102	42.1219
HHHHHHH::ccc[ccc!!ddddpppppppdddd22ccc]c	chr12:99080548-99080751(+)$1	203	47	87	42.1219

#otherMatches

#Seq PSSM
GAUUUUCACCAGAUGAUAAGCUUUUGGCUAGUUGUUCAGC	chr12:99080544-99080748(+)$1	204	51	91	42.1219
GAUUUUCACCAGAUGAUAAGCUUUUGGCUAGUUGUUCAGC	chr12:99080533-99080744(+)$1	211	62	102	42.1219
GAUUUUCACCAGAUGAUAAGCUUUUGGCUAGUUGUUCAGC	chr12:99080548-99080751(+)$1	203	47	87	42.1219

#DB
(((((((..(((.(((..((((.......))))..))).)	chr12:99080544-99080748(+)$1	1	51	91	42.1219
(((((((..(((.(((..((((.......))))..))).)	chr12:99080533-99080744(+)$1	1	62	102	42.1219
(((((((..(((.(((..((((.......))))..))).)	chr12:99080548-99080751(+)$1	1	47	87	42.1219

#PSSM
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
H : 1.00	
: : 1.00	
: : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
[ : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
! : 1.00	
! : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
p : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
2 : 1.00	
2 : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
] : 1.00	
c : 1.00	

#score	126.36587162339994
#seq	3
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_CDS_m1_run2.txt

#BEAR
fff[cccccc[bb"""aooooooa333bb]ccc]cccf	chr9:711953-712224(+)$1	271	20	58	14.8429
====="""eeeee[cccnnnnnccceeeee333=====	chr7:47408201-47408460(-)$1	259	14	52	14.4496
======[a####ddddnnnnndddd4444a]=======	chr1:19454089-19454326(-)$1	237	189	227	15.4156
ggg$$$$$gggggggbbnnnnnbb333ggggggggggg	chr6:56401520-56401785(-)$1	265	116	154	13.4307
bb"""dddd$$$$$cccmmmmccc4444dddd333bb2	chr1:203819579-203819910(+)$1	331	286	324	12.0723
====="""bb[bb[bbnnnnnbb]bbbb4444======	chr10:101594038-101594289(+)$1	251	56	94	13.1035
ggg!!ccc[bb[ddddoooooodddd]bb]cccggggg	chr4:187540781-187541025(-)$1	244	180	218	14.1227
ddd####==========oooooo==========4444d	chr16:24834652-24834908(+)$1	256	205	243	15.7556
#ggggggg[ccc!!bbnnnnnbbccc]ggggggg22gg	chr2:61632748-61632979(-)$1	231	15	53	13.5386
=================mmmm=================	chr19:46289584-46289888(-)$1	304	182	220	17.0141
::=========="""bboooooobb]==========::	chr9:116929963-116930204(+)$1	241	81	119	13.4735
gg[bb####cccaooooooa]ccc333bb]ggggggg2	chr2:167140927-167141261(-)$1	334	25	63	14.1905
eeeeeggggggg!!cccoooooocccgggggggccc[d	chr9:14812710-14812941(-)$1	231	54	92	14.3178
f[dddd[ccc####cccmmmmccccccdddd]ffffff	chr12:26835406-26835622(-)$1	216	23	61	12.4934
iiiiiiiigggggggooooooggggggg333iiiiiii	chr16:72993384-72993646(-)$1	262	212	250	15.6448
)=========="""bboooooobb]==========333	chr9:116930004-116930262(+)$1	258	41	79	17.7523
eedddd[a[ccc"""bbnnnnnbb333ccc]a]dddd]	chr15:43010577-43010813(+)$1	236	173	211	12.9744
=========[bb!!ccclllcccbb]==========cc	chr7:103243650-103243903(-)$1	253	30	68	16.4787
[ccc$$$$$bb[a[cccnnnnnccca]bb4444cccff	chr17:7320746-7321020(+)$1	274	126	164	13.0394
[bbggggggg[ddddoooooodddd4444ggggggg33	chr6:90402622-90402869(-)$1	247	170	208	14.2520
"bb[ccc[bb####cccmmmmccc333bb333ccc22b	chr4:151749231-151749528(-)$1	297	109	147	14.8201
gggggg!!ccc[cccooooooccc]ccc22ggggggg]	chr4:123868416-123868694(+)$1	278	138	176	15.7782
gggggg!!bb[ffffffooooooffffff]bb22gggg	chr4:3318733-3319026(+)$1	293	24	62	12.2295
dd[ccc####ccc[cccooooooccc]ccccccdddde	chr15:43010114-43010376(+)$1	262	74	112	14.1688
:ggggggg!!bb"""ccclllccc333bb22ggggggg	chr1:19512990-19513251(-)$1	261	90	128	15.1149
=========="""ddddmmmmdddd]==========:G	chr17:35609711-35609993(-)$1	282	209	247	15.0918
ee[a[eeeeebb[cccooooooccc]bb4444eeeee]	chr5:14297182-14297472(+)$1	290	117	155	13.2923
gggggg[ccc####ccclllccc4444ccc]ggggggg	chr7:127341229-127341479(+)$1	250	162	200	16.6083
==========^^^^^^^^^^^^^^^^^^==========	chr17:65850546-65850769(+)$1	223	2	40	12.7165
==========="""bboooooobb22============	chr20:61467508-61467743(+)$1	235	161	199	18.6821
gggg!!ffffff!!cccmmmmccc333ffffff22ggg	chr13:77765728-77765993(-)$1	265	91	129	14.0151
ddd[ccc[a[ccc[aooooooa]ccc]a]cccddddff	chr1:19448339-19448606(-)$1	267	59	97	13.1043
hhiiiiiiiiibb[cccrrrrrrrrrccc]bb]iiiii	chr1:39775816-39776046(+)$1	230	42	80	12.2855
ddiiiiiiiii[eeeeemmmmeeeeeiiiiiiiiifff	chr12:57579213-57579484(+)$1	271	156	194	12.6484
iiiii[a####eeeeemmmmeeeee22aiiiiiiiii]	chr12:49448582-49448806(-)$1	224	136	174	13.1298
iiiiiiiieeeee"""ammmma333eeeee]iiiiiii	chr17:80045768-80046002(-)$1	234	182	220	13.9382
ff[bb"""ccc"""ddddllldddd22ccc22bb]fff	chr6:144780319-144780553(+)$1	234	57	95	13.2137
fffff[a[ccc####aooooooa4444ccc]affffff	chr4:187540998-187541287(-)$1	289	183	221	15.7387
hhh"""a[ccc"""cccmmmmcccccc]a22hhhhhhh	chr16:87367391-87367654(-)$1	263	187	225	13.8826
bb!!bb!!ccc"""cccmmmmccc333ccc22bb22bb	chr17:1630812-1631061(+)$1	249	173	211	14.2873
=========="""ddddoooooodddd==========:	chr9:14784395-14784603(-)$1	208	143	181	16.2558
gggggggiiiiiiiiiooooooiiiiiiiii:gggggg	chr2:43779267-43779580(-)$1	313	258	296	14.8763
[ffffff!!ccc[ddddmmmmdddd22ccc22ffffff	chr5:73930590-73930853(-)$1	263	60	98	12.0493
:ggggggg!!ccc[cccmmmmccc]ccc333ggggggg	chr3:42678557-42678812(+)$1	255	213	251	14.7415
bb[bb####dddd[cccooooooccc]dddd4444bb]	chr10:21962433-21962683(+)$1	250	65	103	13.0123
[ggggggg[a[bbddddmmmmdddd]bb22a]gggggg	chr1:19468066-19468330(-)$1	264	13	51	13.0363
iiiiiiiiiccc[ddddllldddd22ccc22iiiiiii	chr1:12320904-12321180(+)$1	276	7	45	14.8110
!!ggggggg####ddddmmmmdddd]ggggggg22ggg	chrX:70787249-70787487(+)$1	238	43	81	14.0059
eeee[a!!dddd!!ccclllccc22dddd22aeeeee]	chr16:2158952-2159185(-)$1	233	136	174	11.8830
cc==========!!cccmmmmccc333==========]	chr7:103280891-103281146(-)$1	255	14	52	18.6047
cccggggggg####bboooooobb4444ggggggg]cc	chr3:32859646-32859939(+)$1	293	189	227	16.3003
!!ccc!!bb[ccccccooooooccc]ccc]bb22ccc]	chr6:90402329-90402575(-)$1	246	83	121	14.2700
ee[a!!a!!dddd[aooooooadddd22a22a]eeeee	chr2:109380261-109380514(+)$1	253	194	232	13.4081
ddd####==========oooooo==========4444d	chr16:24834729-24834994(+)$1	265	128	166	15.7556

#otherMatches

#Seq PSSM
UGGGUGCCGAGGAGAACAUGAACGACAUCGUCGUGUAC	chr9:711953-712224(+)$1	271	20	58	14.8429
CCAGUAUAGCUUCGCCCCAGAUGGGGAGGCCCGGCUGG	chr7:47408201-47408460(-)$1	259	14	52	14.4496
UCCAAGUCUUCCAUAUGUGAGGUAUUUUUGCUUUGGGU	chr1:19454089-19454326(-)$1	237	189	227	15.4156
CUUAUUCAGAGUGCUGCCAAAAGCACUAGCACUCAGGG	chr6:56401520-56401785(-)$1	265	116	154	13.4307
GACUAACUCUCCACUAGCAUUCUAUCUUGAGUAUAUCA	chr1:203819579-203819910(+)$1	331	286	324	12.0723
AAGACCUCAGUGAUGGUGUAUCUCUCCUAAUCGUUUUC	chr10:101594038-101594289(+)$1	251	56	94	13.1035
GGAACGUCUGUUGUUCAAGUUAGAGCCACCGAUUCUGA	chr4:187540781-187541025(-)$1	244	180	218	14.1227
GUCUCUCGGGUCCAGCCAGAGCCGGCUGGGCUCCCUCG	chr16:24834652-24834908(+)$1	256	205	243	15.7556
AUCCUUUUAGUUUAUGGAGUACAGAUGAGAAGGAAAAA	chr2:61632748-61632979(-)$1	231	15	53	13.5386
GUCACCGUGUGGUCCUUCACCGAGGGCCGCGUGGUGGC	chr19:46289584-46289888(-)$1	304	182	220	17.0141
CCAGUCGGGCUUCAUCUUUACGCAGCGGGCCCGGCUCC	chr9:116929963-116930204(+)$1	241	81	119	13.4735
GACUGAAUUUGCCGAUGAUGAGCACAGCAUUUUUGGAG	chr2:167140927-167141261(-)$1	334	25	63	14.1905
UGAGGAGAGCUGGAGUCACAGUGGAUCAGUUCUCUCAG	chr9:14812710-14812941(-)$1	231	54	92	14.3178
UAUGUUCGGUUAAGGCAUUUAUGCACCAACACAUGGGU	chr12:26835406-26835622(-)$1	216	23	61	12.4934
UCGGGAAAUGGUUUGAGGGCCCAGACCAGGCUUUCCCG	chr16:72993384-72993646(-)$1	262	212	250	15.6448
CAGUCGGGCUUCAUCUUUACGCAGCGGGCCCGGCUCCA	chr9:116930004-116930262(+)$1	258	41	79	17.7523
UGGGCUGAAGUGUCGUGAGAAACAAUCUAUGUGGGCCU	chr15:43010577-43010813(+)$1	236	173	211	12.9744
UCAGAUUUUGAGAACCAGAAUGGCUGGGAGUCUGACUG	chr7:103243650-103243903(-)$1	253	30	68	16.4787
GCGGACCCUGCCGAGGCUCUGCGCCCUGCCUGCCCGCC	chr17:7320746-7321020(+)$1	274	126	164	13.0394
UCUGCAGGCCCUCCACAUAGAUGGGCCACGGUCUGCCC	chr6:90402622-90402869(-)$1	247	170	208	14.2520
UGGAUCCUGCCCUUCUGCCACCAGCCUGCCUUGGAGCC	chr4:151749231-151749528(-)$1	297	109	147	14.8201
UUUGCUCACUGAGGCUGAGCUGCUGCAGCUGGCAAAUA	chr4:123868416-123868694(+)$1	278	138	176	15.7782
GGCUGGAGUCGUGGCCGAGUACCCGGCCGAGAAGCUGG	chr4:3318733-3319026(+)$1	293	24	62	12.2295
AGCAGGCGGUGCAGCUUUACUACAAGGUGUUUUCUCCC	chr15:43010114-43010376(+)$1	262	74	112	14.1688
AUUUUCCUAGGCAUGUGUCCUGCAGCGGCAGAGGAAGG	chr1:19512990-19513251(-)$1	261	90	128	15.1149
GGGAUUGGGUUUUUAUAGACUUGUGUACUCAAUCCCUG	chr17:35609711-35609993(-)$1	282	209	247	15.0918
GUUUGCGGCAGCCCUGGAUGAGCGGAGCACCUUGCUGG	chr5:14297182-14297472(+)$1	290	117	155	13.2923
AACAGACAGAUACGACUCAGGGUGAUUUCUUUCUGUUU	chr7:127341229-127341479(+)$1	250	162	200	16.6083
UCAGUUUCUUACAACAAAUAUUGCUCGAGAGGAAUUGA	chr17:65850546-65850769(+)$1	223	2	40	12.7165
GAAGCCGGGAGUUCCGGUACGUCGCUUUUCCGGCUUUU	chr20:61467508-61467743(+)$1	235	161	199	18.6821
GGGUGGUGGUAUGUGGCAUGGGCCCGAGUGUCAGGACC	chr13:77765728-77765993(-)$1	265	91	129	14.0151
UGGUGGAGUUACUCCUUUCCCGUGGUUGGUUCCUAUUU	chr1:19448339-19448606(-)$1	267	59	97	13.1043
AAAGAGGAAGUGUUACAUUUUUAUUCUGUUGCAAUUUC	chr1:39775816-39776046(+)$1	230	42	80	12.2855
GGCCGUGGGCAGCGGGCCUGCGCCUGUGCCCACGGGAU	chr12:57579213-57579484(+)$1	271	156	194	12.6484
AGGGCACAUGAGGAUUUGAGAGUCUAGGGCUUUCAAGG	chr12:49448582-49448806(-)$1	224	136	174	13.1298
GCCGGUGGCACGGGAGCUGCGGAGGCUGUGCCCGCUGG	chr17:80045768-80046002(-)$1	234	182	220	13.9382
UGAUGUCUCAGCCUUCUGCCCCAGAUUUUGUCCAGCGG	chr6:144780319-144780553(+)$1	234	57	95	13.2137
GAAAGUGUUCUACAGCAUCACAGACGGAGACCCUUUCA	chr4:187540998-187541287(-)$1	289	183	221	15.7387
CCUGAAGGUGGGACAGCAUGGGCUUCAGCGAGGGCCCC	chr16:87367391-87367654(-)$1	263	187	225	13.8826
GGUGCUGAAGGACAUCACCCCUGAGGGCCUGGAGAUCC	chr17:1630812-1631061(+)$1	249	173	211	14.2873
UCCCAUUACAAACUUCAGCCAAAUGGAUGUAGUGGGGC	chr9:14784395-14784603(-)$1	208	143	181	16.2558
CUCCUGUCUCAGAAAUCCAUUCAUUUCUGAGCUUUAAC	chr2:43779267-43779580(-)$1	313	258	296	14.8763
CUCUGCUUAUAAAUUCAACAGUGAGACUUACCAGUGGA	chr5:73930590-73930853(-)$1	263	60	98	12.0493
ACAGUCUUAUUCUAGAGGAAGCUCAAGAUCAAGGACUG	chr3:42678557-42678812(+)$1	255	213	251	14.7415
AGCUGUUACUUCACAGCCUAAAAGCUUUGAAAAUUCAC	chr10:21962433-21962683(+)$1	250	65	103	13.0123
GGAGGAAAGCAAGCACCUUCAGGUGACUGGGGUUUCUU	chr1:19468066-19468330(-)$1	264	13	51	13.0363
UGAUGUGCUUGUGCUCCUGUGGGGAAACAGCAGCAUAU	chr1:12320904-12321180(+)$1	276	7	45	14.8110
CUUUGUUGAAAAAGGCAGAUCUGCUAUUAAUAAUUAUU	chrX:70787249-70787487(+)$1	238	43	81	14.0059
UGCGCGCCUUCAACGCCCUGGGCAGUGAGAACCGCACG	chr16:2158952-2159185(-)$1	233	136	174	11.8830
AUGAGUAUUACUUCACAAAAUUGUACUGGUAGUGUUCU	chr7:103280891-103281146(-)$1	255	14	52	18.6047
GCUGCGCUGCCCCGUGUGCGACCAGAAAGUAGUGCUAG	chr3:32859646-32859939(+)$1	293	189	227	16.3003
CACCUCACUCCACAGCAGUAUGGUUGGUGCAGACAGGC	chr6:90402329-90402575(-)$1	246	83	121	14.2700
AUGAGACAGAUGGAGGAAGUGCCCAUGGGGAUGAUGAU	chr2:109380261-109380514(+)$1	253	194	232	13.4081
GUCUCUCGGGUCCAGCCAGAGCCGGCUGGGCUCCCUCG	chr16:24834729-24834994(+)$1	265	128	166	15.7556

#DB
(((.((((((.((...(......)...)).))).))))	chr9:711953-712224(+)$1	1	20	58	14.8429
(((((...(((((.(((.....))))))))...)))))	chr7:47408201-47408460(-)$1	1	14	52	14.4496
((((((.(....((((.....))))....).)))))))	chr1:19454089-19454326(-)$1	1	189	227	15.4156
(((.....(((((((((.....))...)))))))))))	chr6:56401520-56401785(-)$1	1	116	154	13.4307
((...((((.....(((....)))....))))...)).	chr1:203819579-203819910(+)$1	1	286	324	12.0723
(((((...((.((.((.....)).))))....))))))	chr10:101594038-101594289(+)$1	1	56	94	13.1035
(((..(((.((.((((......)))).)).))))))))	chr4:187540781-187541025(-)$1	1	180	218	14.1227
(((....((((((((((......))))))))))....)	chr16:24834652-24834908(+)$1	1	205	243	15.7556
.(((((((.(((..((.....))))).)))))))..))	chr2:61632748-61632979(-)$1	1	15	53	13.5386
(((((((((((((((((....)))))))))))))))))	chr19:46289584-46289888(-)$1	1	182	220	17.0141
..((((((((((...((......)).))))))))))..	chr9:116929963-116930204(+)$1	1	81	119	13.4735
((.((....((((......).)))...)).))))))).	chr2:167140927-167141261(-)$1	1	25	63	14.1905
)))))(((((((..(((......))))))))))(((.(	chr9:14812710-14812941(-)$1	1	54	92	14.3178
(.((((.(((....(((....)))))))))).))))))	chr12:26835406-26835622(-)$1	1	23	61	12.4934
(((((((((((((((......)))))))...)))))))	chr16:72993384-72993646(-)$1	1	212	250	15.6448
.((((((((((...((......)).))))))))))...	chr9:116930004-116930262(+)$1	1	41	79	17.7523
((((((.(.(((...((.....))...))).).)))).	chr15:43010577-43010813(+)$1	1	173	211	12.9744
(((((((((.((..(((...))))).))))))))))))	chr7:103243650-103243903(-)$1	1	30	68	16.4787
.(((.....((.(.(((.....)))).))....)))))	chr17:7320746-7321020(+)$1	1	126	164	13.0394
.(((((((((.((((......))))....)))))))..	chr6:90402622-90402869(-)$1	1	170	208	14.2520
.((.(((.((....(((....)))...))...)))..)	chr4:151749231-151749528(-)$1	1	109	147	14.8201
((((((..(((.(((......))).)))..))))))).	chr4:123868416-123868694(+)$1	1	138	176	15.7782
((((((..((.((((((......)))))).))..))))	chr4:3318733-3319026(+)$1	1	24	62	12.2295
((.(((....(((.(((......))).)))))))))))	chr15:43010114-43010376(+)$1	1	74	112	14.1688
.(((((((..((...(((...)))...))..)))))))	chr1:19512990-19513251(-)$1	1	90	128	15.1149
((((((((((...((((....)))).)))))))))).)	chr17:35609711-35609993(-)$1	1	209	247	15.0918
((.(.(((((((.(((......))).))....))))).	chr5:14297182-14297472(+)$1	1	117	155	13.2923
((((((.(((....(((...)))....))).)))))))	chr7:127341229-127341479(+)$1	1	162	200	16.6083
((((((((((..................))))))))))	chr17:65850546-65850769(+)$1	1	2	40	12.7165
(((((((((((...((......))..))))))))))))	chr20:61467508-61467743(+)$1	1	161	199	18.6821
((((..((((((..(((....)))...))))))..)))	chr13:77765728-77765993(-)$1	1	91	129	14.0151
(((.(((.(.(((.(......).))).).)))))))))	chr1:19448339-19448606(-)$1	1	59	97	13.1043
(((((((((((((.(((.........))).)).)))))	chr1:39775816-39776046(+)$1	1	42	80	12.2855
))(((((((((.(((((....))))))))))))))(((	chr12:57579213-57579484(+)$1	1	156	194	12.6484
(((((.(....(((((....)))))..)))))))))).	chr12:49448582-49448806(-)$1	1	136	174	13.1298
(((((((((((((...(....)...))))).)))))))	chr17:80045768-80046002(-)$1	1	182	220	13.9382
((.((...(((...((((...))))..)))..)).)))	chr6:144780319-144780553(+)$1	1	57	95	13.2137
(((((.(.(((....(......)....))).)))))))	chr4:187540998-187541287(-)$1	1	183	221	15.7387
(((...(.(((...(((....)))))).)..)))))))	chr16:87367391-87367654(-)$1	1	187	225	13.8826
((..((..(((...(((....)))...)))..))..))	chr17:1630812-1631061(+)$1	1	173	211	14.2873
((((((((((...((((......)))))))))))))).	chr9:14784395-14784603(-)$1	1	143	181	16.2558
)))))))(((((((((......))))))))).((((((	chr2:43779267-43779580(-)$1	1	258	296	14.8763
.((((((..(((.((((....))))..)))..))))))	chr5:73930590-73930853(-)$1	1	60	98	12.0493
.(((((((..(((.(((....))).)))...)))))))	chr3:42678557-42678812(+)$1	1	213	251	14.7415
((.((....((((.(((......))).))))....)).	chr10:21962433-21962683(+)$1	1	65	103	13.0123
.(((((((.(.((((((....)))).))..).))))))	chr1:19468066-19468330(-)$1	1	13	51	13.0363
((((((((((((.((((...))))..)))..)))))))	chr1:12320904-12321180(+)$1	1	7	45	14.8110
..(((((((....((((....)))).)))))))..)))	chrX:70787249-70787487(+)$1	1	43	81	14.0059
((((.(..((((..(((...)))..))))..)))))).	chr16:2158952-2159185(-)$1	1	136	174	11.8830
((((((((((((..(((....)))...)))))))))).	chr7:103280891-103281146(-)$1	1	14	52	18.6047
((((((((((....((......))....))))))).))	chr3:32859646-32859939(+)$1	1	189	227	16.3003
..(((..((.((((((......))).))).))..))).	chr6:90402329-90402575(-)$1	1	83	121	14.2700
((.(..(..((((.(......)))))..)..).)))))	chr2:109380261-109380514(+)$1	1	194	232	13.4081
(((....((((((((((......))))))))))....)	chr16:24834729-24834994(+)$1	1	128	166	15.7556

#PSSM
= : 0.16	g : 0.14	d : 0.09	e : 0.09	f : 0.07	i : 0.07	[ : 0.07	b : 0.05	: : 0.05	h : 0.03	! : 0.03	c : 0.03	# : 0.01	) : 0.01	" : 0.01	
g : 0.22	= : 0.18	b : 0.09	d : 0.09	e : 0.09	f : 0.07	i : 0.07	c : 0.05	h : 0.03	! : 0.03	: : 0.01	[ : 0.01	
= : 0.22	g : 0.22	[ : 0.11	i : 0.11	d : 0.09	f : 0.05	c : 0.05	e : 0.03	b : 0.03	" : 0.01	h : 0.01	! : 0.01	
= : 0.22	g : 0.22	i : 0.11	[ : 0.05	b : 0.05	c : 0.05	" : 0.03	! : 0.03	# : 0.03	e : 0.03	d : 0.03	a : 0.03	f : 0.03	$ : 0.01	
= : 0.22	g : 0.20	i : 0.11	c : 0.09	b : 0.07	! : 0.05	$ : 0.03	" : 0.03	# : 0.03	d : 0.03	[ : 0.03	f : 0.03	e : 0.01	
g : 0.22	= : 0.18	c : 0.09	i : 0.09	" : 0.07	# : 0.07	d : 0.05	! : 0.05	$ : 0.03	[ : 0.03	e : 0.01	b : 0.01	f : 0.01	a : 0.01	
g : 0.16	= : 0.16	# : 0.09	i : 0.09	! : 0.09	c : 0.07	[ : 0.07	a : 0.07	" : 0.05	$ : 0.03	f : 0.03	d : 0.01	e : 0.01	
= : 0.20	g : 0.14	i : 0.11	! : 0.11	c : 0.07	# : 0.07	[ : 0.07	" : 0.05	a : 0.03	$ : 0.03	d : 0.01	e : 0.01	f : 0.01	b : 0.01	
= : 0.20	c : 0.14	g : 0.11	# : 0.09	b : 0.07	[ : 0.07	! : 0.07	i : 0.07	e : 0.05	d : 0.03	$ : 0.01	f : 0.01	a : 0.01	
c : 0.24	= : 0.18	g : 0.09	b : 0.09	# : 0.07	e : 0.05	[ : 0.05	i : 0.05	d : 0.05	! : 0.03	$ : 0.01	f : 0.01	a : 0.01	
c : 0.25	# : 0.12	= : 0.12	[ : 0.09	b : 0.09	g : 0.05	i : 0.05	d : 0.05	e : 0.03	" : 0.03	$ : 0.01	^ : 0.01	f : 0.01	
c : 0.16	b : 0.12	# : 0.12	" : 0.12	= : 0.09	[ : 0.07	d : 0.07	e : 0.05	g : 0.05	f : 0.03	$ : 0.01	^ : 0.01	i : 0.01	
" : 0.18	! : 0.11	# : 0.11	d : 0.09	c : 0.09	b : 0.07	e : 0.07	= : 0.05	[ : 0.05	g : 0.03	a : 0.03	$ : 0.01	f : 0.01	^ : 0.01	i : 0.01	
" : 0.18	[ : 0.16	d : 0.16	! : 0.11	# : 0.09	= : 0.05	c : 0.05	g : 0.03	e : 0.03	$ : 0.01	o : 0.01	f : 0.01	^ : 0.01	i : 0.01	
c : 0.37	d : 0.18	" : 0.09	b : 0.09	= : 0.05	g : 0.03	a : 0.03	e : 0.03	o : 0.01	f : 0.01	^ : 0.01	# : 0.01	i : 0.01	
c : 0.37	d : 0.16	b : 0.14	o : 0.11	= : 0.05	" : 0.03	e : 0.03	f : 0.01	^ : 0.01	a : 0.01	i : 0.01	
c : 0.33	o : 0.25	d : 0.12	n : 0.05	b : 0.05	= : 0.05	a : 0.03	f : 0.01	^ : 0.01	e : 0.01	m : 0.01	
o : 0.42	m : 0.29	n : 0.12	l : 0.07	c : 0.01	^ : 0.01	r : 0.01	d : 0.01	
o : 0.42	m : 0.29	n : 0.12	l : 0.11	^ : 0.01	r : 0.01	
o : 0.40	m : 0.29	n : 0.12	l : 0.11	a : 0.01	^ : 0.01	r : 0.01	
o : 0.40	m : 0.27	n : 0.12	c : 0.05	l : 0.03	] : 0.01	^ : 0.01	r : 0.01	e : 0.01	d : 0.01	
o : 0.31	c : 0.25	d : 0.14	n : 0.07	a : 0.05	b : 0.03	e : 0.03	= : 0.01	g : 0.01	^ : 0.01	r : 0.01	
c : 0.33	d : 0.18	o : 0.16	b : 0.12	e : 0.03	= : 0.01	g : 0.01	^ : 0.01	] : 0.01	r : 0.01	3 : 0.01	a : 0.01	i : 0.01	
c : 0.37	d : 0.20	b : 0.12	= : 0.05	4 : 0.03	e : 0.03	a : 0.01	] : 0.01	g : 0.01	f : 0.01	^ : 0.01	r : 0.01	3 : 0.01	i : 0.01	2 : 0.01	
c : 0.20	3 : 0.18	d : 0.18	4 : 0.07	b : 0.05	= : 0.05	] : 0.05	2 : 0.05	e : 0.03	g : 0.01	f : 0.01	^ : 0.01	r : 0.01	i : 0.01	
3 : 0.16	c : 0.16	] : 0.12	4 : 0.11	2 : 0.09	d : 0.07	= : 0.07	e : 0.05	b : 0.01	g : 0.01	a : 0.01	f : 0.01	^ : 0.01	r : 0.01	i : 0.01	
3 : 0.16	= : 0.14	c : 0.12	4 : 0.11	] : 0.11	2 : 0.07	b : 0.05	g : 0.05	e : 0.03	i : 0.03	d : 0.03	f : 0.01	^ : 0.01	
c : 0.22	= : 0.18	b : 0.16	g : 0.09	4 : 0.07	d : 0.05	e : 0.03	f : 0.03	a : 0.03	i : 0.03	^ : 0.01	] : 0.01	2 : 0.01	
= : 0.20	c : 0.18	b : 0.11	g : 0.09	4 : 0.07	d : 0.07	i : 0.05	e : 0.03	3 : 0.03	2 : 0.03	f : 0.03	a : 0.03	] : 0.01	
= : 0.20	c : 0.14	2 : 0.12	] : 0.11	g : 0.11	d : 0.05	4 : 0.05	3 : 0.05	i : 0.05	e : 0.03	a : 0.01	f : 0.01	
= : 0.20	g : 0.14	2 : 0.14	] : 0.09	c : 0.07	3 : 0.07	d : 0.05	4 : 0.05	b : 0.05	i : 0.05	f : 0.01	a : 0.01	
= : 0.22	g : 0.20	i : 0.09	c : 0.07	4 : 0.07	a : 0.07	b : 0.05	2 : 0.05	3 : 0.03	] : 0.03	d : 0.01	f : 0.01	h : 0.01	: : 0.01	
= : 0.24	g : 0.24	i : 0.09	c : 0.07	f : 0.07	] : 0.05	3 : 0.03	4 : 0.03	2 : 0.03	e : 0.03	b : 0.03	d : 0.01	h : 0.01	
= : 0.22	g : 0.22	i : 0.11	2 : 0.07	4 : 0.05	c : 0.05	f : 0.05	d : 0.05	e : 0.05	b : 0.03	] : 0.01	3 : 0.01	h : 0.01	
= : 0.22	g : 0.22	i : 0.11	c : 0.09	2 : 0.07	4 : 0.05	f : 0.05	d : 0.05	e : 0.05	3 : 0.01	] : 0.01	h : 0.01	
g : 0.24	= : 0.20	f : 0.09	i : 0.09	c : 0.07	2 : 0.05	d : 0.05	e : 0.05	b : 0.03	4 : 0.03	3 : 0.01	h : 0.01	] : 0.01	
g : 0.24	= : 0.14	f : 0.12	i : 0.09	c : 0.07	b : 0.05	e : 0.05	4 : 0.03	: : 0.03	3 : 0.03	d : 0.03	[ : 0.01	2 : 0.01	h : 0.01	
g : 0.20	f : 0.14	] : 0.14	= : 0.11	i : 0.07	d : 0.05	2 : 0.03	: : 0.03	3 : 0.03	c : 0.03	b : 0.03	e : 0.03	G : 0.01	h : 0.01	

#score	776.1214751707777
#seq	54
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF485DDA_ILF3_transcript_m3_run2.txt

#BEAR
$ddddoooooodddd66	chr19:56150450-56150741(+)$1	291	202	219	10.0521
d[cccooooooccc22d	chr1:156346464-156346714(+)$1	250	227	244	10.8866
c[cccoooooocccccc	chr2:175084254-175084547(-)$1	293	44	61	11.1483
[ddddoooooodddd]a	chr11:67035353-67035620(+)$1	267	183	200	11.1328
eee[aooooooaeeeee	chr8:13129329-13129591(-)$1	262	184	201	11.2260
gggggoooooogggggg	chr14:71825562-71825833(+)$1	271	44	61	10.9052
fffffooooooffffff	chr16:85686875-85687160(+)$1	285	122	139	10.2429
fffffooooooffffff	chr20:52119907-52120170(-)$1	263	202	219	10.2429
[ddddoooooodddd22	chr2:54193433-54193685(-)$1	252	215	232	10.8705
!ddddooooooddddcc	chr16:30675650-30675929(+)$1	279	175	192	11.0132
#ddddoooooodddd66	chr1:87414708-87414960(+)$1	252	140	157	10.2421
gggggoooooogggggg	chr22:28999293-28999581(-)$1	288	61	78	10.9052
dd!!aooooooa333dd	chr19:56172645-56172895(+)$1	250	35	52	10.5617
eeeeeooooooeeeeee	chr2:171820067-171820355(+)$1	288	206	223	11.1199
eeeeeooooooeeeee:	chr13:46093734-46094050(+)$1	316	114	131	10.3706
"ddddooooooddddcc	chr19:47671478-47671811(+)$1	333	150	167	10.9461
ddcccooooooccc]dd	chr10:5730586-5730853(+)$1	267	42	59	10.9596
"""bboooooobb333d	chr13:98851066-98851356(+)$1	290	25	42	10.2396
ee[bboooooobb]eee	chr11:2160011-2160214(-)$1	203	93	110	10.5286
fffffooooooffffff	chr19:58199910-58200165(+)$1	255	159	176	10.2429
gggggoooooogggggg	chr5:125897826-125898108(-)$1	282	236	253	10.9052
fffffooooooffffff	chr16:30895366-30895696(+)$1	330	270	287	10.2429
b[cccooooooccc333	chr4:87916195-87916474(+)$1	279	134	151	11.3150
eecccooooooccc]ee	chr16:73046247-73046499(-)$1	252	136	153	11.4799
===bboooooobb]===	chr13:41208633-41208886(-)$1	253	228	245	10.4124
ggggaooooooa]gggg	chr6:30167657-30167935(-)$1	278	64	81	10.9105
iiiiiooooooiiiiii	chr10:104726788-104727023(+)$1	235	88	105	10.7616
eeeeeooooooeeeee:	chr3:78965356-78965618(-)$1	262	154	171	10.3706
[ddddoooooodddd33	chr7:1193197-1193473(-)$1	276	204	221	11.3410
c[cccooooooccc]cc	chr8:131365884-131366140(-)$1	256	136	153	11.3081
eee[aooooooaeeeee	chr19:11235476-11235725(+)$1	249	8	25	11.2260
eecccooooooccc22e	chr19:39448599-39448835(-)$1	236	94	111	11.1658
fffffooooooffffff	chr10:96338233-96338543(+)$1	310	29	46	10.2429
ccc[aooooooa]cccd	chr1:21090995-21091271(-)$1	276	174	191	10.6132
[ddddoooooodddd]c	chr2:10301141-10301364(+)$1	223	185	202	11.1440
eeeeeooooooeeeeec	chr2:150463980-150464235(+)$1	255	90	107	11.1793
=====oooooo======	chr14:24692751-24693030(-)$1	279	89	106	11.0940
bbcccooooooccc22b	chr2:191124482-191124757(-)$1	275	63	80	10.1734
[ddddoooooodddd22	chr8:22233833-22234090(+)$1	257	168	185	10.8705
eeeeeooooooeeeee4	chr16:50611191-50611436(+)$1	245	120	137	11.2528
fffffooooooffffff	chr14:35042176-35042452(-)$1	276	165	182	10.2429
eeeeeooooooeeeee]	chr17:43217969-43218240(+)$1	271	131	148	11.2036
ee[bboooooobb]eee	chr11:2159971-2160184(-)$1	213	63	80	10.5286
c[cccooooooccc]cc	chr12:56482834-56483094(+)$1	260	240	257	11.3081
ee[bboooooobb]eee	chr11:2160063-2160267(-)$1	204	146	163	10.5286
[ddddoooooodddddd	chr15:102013427-102013686(-)$1	259	139	156	10.8308
ff!!aooooooa22fff	chr2:171819901-171820159(+)$1	258	153	170	10.0903
fffffooooooffffff	chr14:31484336-31484574(-)$1	238	159	176	10.2429
eeeeeooooooeeeee:	chr20:43013867-43014194(-)$1	327	261	278	10.3706
fbb[aooooooabb]ff	chr5:74106469-74106680(-)$1	211	146	163	9.7504
e[cccooooooccc]ee	chr10:74798897-74799146(-)$1	249	216	233	11.4557
eeeeeooooooeeeee:	chr11:12731204-12731465(+)$1	261	0	17	10.3706
$ddddoooooodddd44	chr16:16291589-16291878(-)$1	289	192	209	10.9139
eeeeeooooooeeeee:	chr7:150795736-150796016(+)$1	280	205	222	10.3706
iicccooooooccc888	chr16:68229671-68229950(+)$1	279	65	82	10.0590
"ddddoooooodddd66	chr2:47395708-47395955(-)$1	247	167	184	10.2812
!!cccooooooccc22c	chr14:23565864-23566159(+)$1	295	84	101	11.2462
$$cccooooooccchhh	chr17:79222835-79223097(-)$1	262	169	186	10.0289
ee[bboooooobb]eee	chr11:2160060-2160263(-)$1	203	142	159	10.5286
[ddddooooooddddee	chr6:132134306-132134581(+)$1	275	222	239	11.0728
gggggoooooogggggg	chr12:56483031-56483287(+)$1	256	194	211	10.9052
"ddddoooooodddd33	chr7:100152583-100152843(+)$1	260	190	207	11.2531
d[cccooooooccc]dd	chr12:12706742-12707018(-)$1	276	147	164	11.0182
cc[bboooooobb]ccc	chr1:159996362-159996672(-)$1	310	95	112	10.1021
eeeeeooooooeeeee:	chr17:26996499-26996750(+)$1	251	9	26	10.3706
eeeeeooooooeeeee4	chr16:68133622-68133883(+)$1	261	210	227	11.2528

#otherMatches

#Seq PSSM
agagugguccggcucaa	chr19:56150450-56150741(+)$1	291	202	219	10.0521
AUGUCAAGAAGGACUUU	chr1:156346464-156346714(+)$1	250	227	244	10.8866
GCAAUUACAGUAUUCAG	chr2:175084254-175084547(-)$1	293	44	61	11.1483
uccacacugccgugguc	chr11:67035353-67035620(+)$1	267	183	200	11.1328
ccaagaccagccugggu	chr8:13129329-13129591(-)$1	262	184	201	11.2260
caccaaagggauggugc	chr14:71825562-71825833(+)$1	271	44	61	10.9052
CCUGCGUGUGUGCGGGG	chr16:85686875-85687160(+)$1	285	122	139	10.2429
gcaugagccaccaugcc	chr20:52119907-52120170(-)$1	263	202	219	10.2429
AACUUUAAAUUAAGUAG	chr2:54193433-54193685(-)$1	252	215	232	10.8705
ACGCCCUUUCUGGUGAG	chr16:30675650-30675929(+)$1	279	175	192	11.0132
ugcugugaucucagcuc	chr1:87414708-87414960(+)$1	252	140	157	10.2421
agcuguagucccagcua	chr22:28999293-28999581(-)$1	288	61	78	10.9052
CCCAGACGGACCGAUGG	chr19:56172645-56172895(+)$1	250	35	52	10.5617
ucccaaguagcugggac	chr2:171820067-171820355(+)$1	288	206	223	11.1199
ugaaggaacgacuuuau	chr13:46093734-46094050(+)$1	316	114	131	10.3706
uggcucacugcagccuc	chr19:47671478-47671811(+)$1	333	150	167	10.9461
uucacugaauugugcag	chr10:5730586-5730853(+)$1	267	42	59	10.9596
acugcacuccagccuag	chr13:98851066-98851356(+)$1	290	25	42	10.2396
UGCAGCCUCCACUCCGC	chr11:2160011-2160214(-)$1	203	93	110	10.5286
AGUUGUGCUGUCAGCUU	chr19:58199910-58200165(+)$1	255	159	176	10.2429
gauauuucacuguauug	chr5:125897826-125898108(-)$1	282	236	253	10.9052
GGGACAGGAGAGUCUCU	chr16:30895366-30895696(+)$1	330	270	287	10.2429
aacugaaauugcagcac	chr4:87916195-87916474(+)$1	279	134	151	11.3150
CACAUUCCUCCAUGAUG	chr16:73046247-73046499(-)$1	252	136	153	11.4799
UUAAAUUUUUUUUGUAG	chr13:41208633-41208886(-)$1	253	228	245	10.4124
cucacuauguugcugag	chr6:30167657-30167935(-)$1	278	64	81	10.9105
uaaaaaauuucuuuuag	chr10:104726788-104727023(+)$1	235	88	105	10.7616
ucccaaagugcugggau	chr3:78965356-78965618(-)$1	262	154	171	10.3706
UCAAAUGAAACUUUGCA	chr7:1193197-1193473(-)$1	276	204	221	11.3410
agcugggacuacaggug	chr8:131365884-131366140(-)$1	256	136	153	11.3081
ucgugaucugcccgagg	chr19:11235476-11235725(+)$1	249	8	25	11.2260
caggaucucacucuauu	chr19:39448599-39448835(-)$1	236	94	111	11.1658
ggccaagaugguggcca	chr10:96338233-96338543(+)$1	310	29	46	10.2429
CUGUGUAUCUUCUCAGA	chr1:21090995-21091271(-)$1	276	174	191	10.6132
acaugcaccaccaugcc	chr2:10301141-10301364(+)$1	223	185	202	11.1440
cugauugguuuaucagg	chr2:150463980-150464235(+)$1	255	90	107	11.1793
uuuuuuuuuccaaaaaa	chr14:24692751-24693030(-)$1	279	89	106	11.0940
accaauuaaguuugaug	chr2:191124482-191124757(-)$1	275	63	80	10.1734
gaguauuuuuuuacugg	chr8:22233833-22234090(+)$1	257	168	185	10.8705
auaagcauacacuuaug	chr16:50611191-50611436(+)$1	245	120	137	11.2528
ugagcccaggaguucaa	chr14:35042176-35042452(-)$1	276	165	182	10.2429
ugggcgugguggcucac	chr17:43217969-43218240(+)$1	271	131	148	11.2036
UGCAGCCUCCACUCCGC	chr11:2159971-2160184(-)$1	213	63	80	10.5286
uguauuuuuuuguagag	chr12:56482834-56483094(+)$1	260	240	257	11.3081
UGCAGCCUCCACUCCGC	chr11:2160063-2160267(-)$1	204	146	163	10.5286
ugagcccagaaguucga	chr15:102013427-102013686(-)$1	259	139	156	10.8308
CUGACUUUAAUGAAAGU	chr2:171819901-171820159(+)$1	258	153	170	10.0903
GCCUUCCUGGUAAGGCU	chr14:31484336-31484574(-)$1	238	159	176	10.2429
UCAGACCGCACUUUGAA	chr20:43013867-43014194(-)$1	327	261	278	10.3706
ggcacaaacucggcuca	chr5:74106469-74106680(-)$1	211	146	163	9.7504
agcugggaauacaggug	chr10:74798897-74799146(-)$1	249	216	233	11.4557
gugcaugccacugcgcc	chr11:12731204-12731465(+)$1	261	0	17	10.3706
AAAGGUUUUACCCUUGU	chr16:16291589-16291878(-)$1	289	192	209	10.9139
ucccgaguagcugggau	chr7:150795736-150796016(+)$1	280	205	222	10.3706
GACAGAAAAAACUGAAA	chr16:68229671-68229950(+)$1	279	65	82	10.0590
caagcuguucugcuuca	chr2:47395708-47395955(-)$1	247	167	184	10.2812
cuaauuuuuuuauuuuu	chr14:23565864-23566159(+)$1	295	84	101	11.2462
GAGGCCAUGGUGCCUGC	chr17:79222835-79223097(-)$1	262	169	186	10.0289
UGCAGCCUCCACUCCGC	chr11:2160060-2160263(-)$1	203	142	159	10.5286
gcaugguaguacaugcc	chr6:132134306-132134581(+)$1	275	222	239	11.0728
gauuuggauaaaaaucu	chr12:56483031-56483287(+)$1	256	194	211	10.9052
CCUGUGGAAAGGCAGAU	chr7:100152583-100152843(+)$1	260	190	207	11.2531
guguaauccacugcucc	chr12:12706742-12707018(-)$1	276	147	164	11.0182
guaguauaaacauggcu	chr1:159996362-159996672(-)$1	310	95	112	10.1021
guuuuuaaaacaaaaca	chr17:26996499-26996750(+)$1	251	9	26	10.3706
ucccaaagugcugggau	chr16:68133622-68133883(+)$1	261	210	227	11.2528

#DB
.((((......))))..	chr19:56150450-56150741(+)$1	1	202	219	10.0521
(.(((......)))..)	chr1:156346464-156346714(+)$1	1	227	244	10.8866
(.(((......))))))	chr2:175084254-175084547(-)$1	1	44	61	11.1483
.((((......)))).)	chr11:67035353-67035620(+)$1	1	183	200	11.1328
(((.(......))))))	chr8:13129329-13129591(-)$1	1	184	201	11.2260
(((((......))))))	chr14:71825562-71825833(+)$1	1	44	61	10.9052
(((((......))))))	chr16:85686875-85687160(+)$1	1	122	139	10.2429
(((((......))))))	chr20:52119907-52120170(-)$1	1	202	219	10.2429
.((((......))))..	chr2:54193433-54193685(-)$1	1	215	232	10.8705
.((((......))))))	chr16:30675650-30675929(+)$1	1	175	192	11.0132
.((((......))))..	chr1:87414708-87414960(+)$1	1	140	157	10.2421
(((((......))))))	chr22:28999293-28999581(-)$1	1	61	78	10.9052
((..(......)...))	chr19:56172645-56172895(+)$1	1	35	52	10.5617
(((((......)))))(	chr2:171820067-171820355(+)$1	1	206	223	11.1199
(((((......))))).	chr13:46093734-46094050(+)$1	1	114	131	10.3706
.((((......))))))	chr19:47671478-47671811(+)$1	1	150	167	10.9461
(((((......))).))	chr10:5730586-5730853(+)$1	1	42	59	10.9596
...((......))...)	chr13:98851066-98851356(+)$1	1	25	42	10.2396
((.((......)).)))	chr11:2160011-2160214(-)$1	1	93	110	10.5286
(((((......))))))	chr19:58199910-58200165(+)$1	1	159	176	10.2429
(((((......))))))	chr5:125897826-125898108(-)$1	1	236	253	10.9052
(((((......))))))	chr16:30895366-30895696(+)$1	1	270	287	10.2429
(.(((......)))...	chr4:87916195-87916474(+)$1	1	134	151	11.3150
(((((......))).))	chr16:73046247-73046499(-)$1	1	136	153	11.4799
(((((......)).)))	chr13:41208633-41208886(-)$1	1	228	245	10.4124
(((((......).))))	chr6:30167657-30167935(-)$1	1	64	81	10.9105
(((((......))))))	chr10:104726788-104727023(+)$1	1	88	105	10.7616
(((((......))))).	chr3:78965356-78965618(-)$1	1	154	171	10.3706
.((((......))))..	chr7:1193197-1193473(-)$1	1	204	221	11.3410
(.(((......))).))	chr8:131365884-131366140(-)$1	1	136	153	11.3081
(((.(......))))))	chr19:11235476-11235725(+)$1	1	8	25	11.2260
(((((......)))..)	chr19:39448599-39448835(-)$1	1	94	111	11.1658
(((((......))))))	chr10:96338233-96338543(+)$1	1	29	46	10.2429
(((.(......).))))	chr1:21090995-21091271(-)$1	1	174	191	10.6132
.((((......)))).)	chr2:10301141-10301364(+)$1	1	185	202	11.1440
(((((......)))))(	chr2:150463980-150464235(+)$1	1	90	107	11.1793
(((((......))))))	chr14:24692751-24693030(-)$1	1	89	106	11.0940
(((((......)))..)	chr2:191124482-191124757(-)$1	1	63	80	10.1734
.((((......))))..	chr8:22233833-22234090(+)$1	1	168	185	10.8705
(((((......))))).	chr16:50611191-50611436(+)$1	1	120	137	11.2528
(((((......))))))	chr14:35042176-35042452(-)$1	1	165	182	10.2429
(((((......))))).	chr17:43217969-43218240(+)$1	1	131	148	11.2036
((.((......)).)))	chr11:2159971-2160184(-)$1	1	63	80	10.5286
(.(((......))).))	chr12:56482834-56483094(+)$1	1	240	257	11.3081
((.((......)).)))	chr11:2160063-2160267(-)$1	1	146	163	10.5286
.((((......))))))	chr15:102013427-102013686(-)$1	1	139	156	10.8308
((..(......)..)))	chr2:171819901-171820159(+)$1	1	153	170	10.0903
(((((......))))))	chr14:31484336-31484574(-)$1	1	159	176	10.2429
(((((......))))).	chr20:43013867-43014194(-)$1	1	261	278	10.3706
(((.(......))).))	chr5:74106469-74106680(-)$1	1	146	163	9.7504
(.(((......))).))	chr10:74798897-74799146(-)$1	1	216	233	11.4557
(((((......))))).	chr11:12731204-12731465(+)$1	1	0	17	10.3706
.((((......))))..	chr16:16291589-16291878(-)$1	1	192	209	10.9139
(((((......))))).	chr7:150795736-150796016(+)$1	1	205	222	10.3706
(((((......)))...	chr16:68229671-68229950(+)$1	1	65	82	10.0590
.((((......))))..	chr2:47395708-47395955(-)$1	1	167	184	10.2812
..(((......)))..)	chr14:23565864-23566159(+)$1	1	84	101	11.2462
..(((......))))))	chr17:79222835-79223097(-)$1	1	169	186	10.0289
((.((......)).)))	chr11:2160060-2160263(-)$1	1	142	159	10.5286
.((((......))))))	chr6:132134306-132134581(+)$1	1	222	239	11.0728
(((((......))))))	chr12:56483031-56483287(+)$1	1	194	211	10.9052
.((((......))))..	chr7:100152583-100152843(+)$1	1	190	207	11.2531
(.(((......))).))	chr12:12706742-12707018(-)$1	1	147	164	11.0182
((.((......)).)))	chr1:159996362-159996672(-)$1	1	95	112	10.1021
(((((......))))).	chr17:26996499-26996750(+)$1	1	9	26	10.3706
(((((......))))).	chr16:68133622-68133883(+)$1	1	210	227	11.2528

#PSSM
e : 0.30	f : 0.13	[ : 0.10	c : 0.07	g : 0.07	d : 0.06	" : 0.06	$ : 0.04	! : 0.03	b : 0.03	= : 0.03	i : 0.03	# : 0.01	
e : 0.28	d : 0.24	f : 0.12	[ : 0.10	g : 0.07	= : 0.03	i : 0.03	c : 0.03	b : 0.03	" : 0.01	! : 0.01	$ : 0.01	
c : 0.22	d : 0.21	e : 0.19	f : 0.10	g : 0.07	[ : 0.07	! : 0.03	= : 0.03	" : 0.01	i : 0.01	b : 0.01	
d : 0.21	c : 0.21	e : 0.16	f : 0.10	b : 0.10	g : 0.07	[ : 0.06	! : 0.03	i : 0.01	= : 0.01	
d : 0.21	c : 0.21	e : 0.16	a : 0.10	f : 0.10	b : 0.10	g : 0.06	i : 0.01	= : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
d : 0.21	c : 0.21	e : 0.16	a : 0.10	f : 0.10	b : 0.10	g : 0.06	i : 0.01	= : 0.01	
d : 0.21	c : 0.21	e : 0.19	b : 0.12	f : 0.10	g : 0.06	] : 0.03	3 : 0.01	i : 0.01	= : 0.01	2 : 0.01	
c : 0.22	d : 0.21	e : 0.19	f : 0.10	] : 0.09	g : 0.07	3 : 0.03	i : 0.01	= : 0.01	2 : 0.01	b : 0.01	
e : 0.25	d : 0.21	f : 0.12	] : 0.10	g : 0.07	2 : 0.06	c : 0.04	3 : 0.04	= : 0.03	i : 0.01	8 : 0.01	h : 0.01	
e : 0.30	f : 0.13	c : 0.10	2 : 0.09	g : 0.07	d : 0.06	3 : 0.06	6 : 0.04	] : 0.03	= : 0.03	i : 0.01	4 : 0.01	8 : 0.01	h : 0.01	
e : 0.16	c : 0.13	f : 0.13	d : 0.10	: : 0.09	g : 0.07	6 : 0.04	3 : 0.04	4 : 0.04	2 : 0.03	= : 0.03	a : 0.01	i : 0.01	b : 0.01	] : 0.01	8 : 0.01	h : 0.01	

#score	708.1761393573496
#seq	66
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400CFS_RBM5_UTR_m2_run1.txt

#BEAR
eeeeemmmmeeeee	chr11:61109873-61110111(+)$1	238	31	45	10.7238
eeeeooooooeeee	chr2:216177027-216177307(+)$1	280	264	278	9.1213
eeeeemmmmeeeee	chr20:36151576-36151858(-)$1	282	247	261	10.7238
eeeeemmmmeeeee	chr14:54421087-54421366(-)$1	279	32	46	10.7238
eeeeemmmmeeeee	chr17:42398546-42398801(-)$1	255	112	126	10.7238
eeeeemmmmeeeee	chr17:62498269-62498494(-)$1	225	51	65	10.7238
eeeeemmmmeeeee	chr19:2228265-2228507(+)$1	242	97	111	10.7238
eeeeemmmmeeeee	chr17:79211180-79211444(-)$1	264	108	122	10.7238
eeeeemmmmeeeee	chr1:25568833-25569128(-)$1	295	19	33	10.7238
eeeee4444eeeee	chr16:89724493-89724758(+)$1	265	218	232	8.5451
eee[ammmma]eee	chr11:72534161-72534420(+)$1	259	178	192	8.7330
:eeeeellleeeee	chr5:179264827-179265087(-)$1	260	0	14	8.2693
eeeeemmmmeeeee	chr16:28847426-28847662(+)$1	236	37	51	10.7238
eeeeemmmmeeeee	chr17:2593182-2593453(-)$1	271	43	57	10.7238
eeeeemmmmeeeee	chr14:21967359-21967672(-)$1	313	131	145	10.7238
eeeeemmmmeeeee	chr5:172755102-172755394(-)$1	292	8	22	10.7238
eeeeooooooeeee	chr17:40271104-40271356(-)$1	252	65	79	9.1213
eeeeennnnneeee	chr17:73127285-73127556(-)$1	271	0	14	8.9109
eeeeennnnneeee	chr19:54971742-54971991(+)$1	249	11	25	8.9109
eeeeennnnneeee	chr6:31937133-31937369(+)$1	236	217	231	8.9109
eeeeemmmmeeeee	chr19:5933405-5933653(-)$1	248	43	57	10.7238
eeeeemmmmeeeee	chr5:52386506-52386748(+)$1	242	189	203	10.7238
:eeeeellleeeee	chr16:3729708-3729964(-)$1	256	38	52	8.2693
eeeeooooooeeee	chr17:7477038-7477283(+)$1	245	63	77	9.1213
eeeeennnnneeee	chr17:7481323-7481559(+)$1	236	192	206	8.9109
[eeeeellleeeee	chr16:2581166-2581421(+)$1	255	154	168	9.2795
[eeeeellleeeee	chr11:62566196-62566452(-)$1	256	135	149	9.2795
eeeeemmmmeeeee	chr17:56082934-56083222(-)$1	288	20	34	10.7238
eeeeooooooeeee	chr3:48670988-48671252(-)$1	264	14	28	9.1213
[ddddmmmmddddd	chr16:67977022-67977275(-)$1	253	148	162	5.7123

#otherMatches

#Seq PSSM
GGUCAGCAGUGACC	chr11:61109873-61110111(+)$1	238	31	45	10.7238
CUGGUCGCUUCCGG	chr2:216177027-216177307(+)$1	280	264	278	9.1213
GCGGUUGGUGCUGC	chr20:36151576-36151858(-)$1	282	247	261	10.7238
AUUCUUGAAGGAGU	chr14:54421087-54421366(-)$1	279	32	46	10.7238
AGGUCCCCAGACCU	chr17:42398546-42398801(-)$1	255	112	126	10.7238
AUUUCUGGCGAAAU	chr17:62498269-62498494(-)$1	225	51	65	10.7238
GCAGUGCGUAUUGU	chr19:2228265-2228507(+)$1	242	97	111	10.7238
UCCCCUUUGGGGGG	chr17:79211180-79211444(-)$1	264	108	122	10.7238
AGUCCAUAUGGACU	chr1:25568833-25569128(-)$1	295	19	33	10.7238
AUGGAGAAGCAUUC	chr16:89724493-89724758(+)$1	265	218	232	8.5451
GCAGCCAUAGGUGU	chr11:72534161-72534420(+)$1	259	178	192	8.7330
AGCAGAAGGUUUGC	chr5:179264827-179265087(-)$1	260	0	14	8.2693
CCUGGAUUUCCAGG	chr16:28847426-28847662(+)$1	236	37	51	10.7238
UCUGAAAGUUCAGG	chr17:2593182-2593453(-)$1	271	43	57	10.7238
GGUAAUCUGUUAUC	chr14:21967359-21967672(-)$1	313	131	145	10.7238
GCUCUCCGGAGAGC	chr5:172755102-172755394(-)$1	292	8	22	10.7238
AGGACCCUCAUCCU	chr17:40271104-40271356(-)$1	252	65	79	9.1213
AGGGCGCAGAGCUC	chr17:73127285-73127556(-)$1	271	0	14	8.9109
GGGGUCACUAAccc	chr19:54971742-54971991(+)$1	249	11	25	8.9109
UCAGCGCCUGGCUG	chr6:31937133-31937369(+)$1	236	217	231	8.9109
CCUGGUUCUCCAGG	chr19:5933405-5933653(-)$1	248	43	57	10.7238
AGAGUUUACAUUCU	chr5:52386506-52386748(+)$1	242	189	203	10.7238
GAGCAUCUGGUGCU	chr16:3729708-3729964(-)$1	256	38	52	8.2693
GAGGGGGGGGCUUC	chr17:7477038-7477283(+)$1	245	63	77	9.1213
GUCAUCAACUAUGA	chr17:7481323-7481559(+)$1	236	192	206	8.9109
GCAGGAUGAUUUUG	chr16:2581166-2581421(+)$1	255	154	168	9.2795
UGGGCUUAAAGCCU	chr11:62566196-62566452(-)$1	256	135	149	9.2795
CAGUUCGAAAACUG	chr17:56082934-56083222(-)$1	288	20	34	10.7238
GUCUGAGUUUGGAC	chr3:48670988-48671252(-)$1	264	14	28	9.1213
UGCUGCUCACAGUG	chr16:67977022-67977275(-)$1	253	148	162	5.7123

#DB
(((((....)))))	chr11:61109873-61110111(+)$1	1	31	45	10.7238
((((......))))	chr2:216177027-216177307(+)$1	1	264	278	9.1213
(((((....)))))	chr20:36151576-36151858(-)$1	1	247	261	10.7238
(((((....)))))	chr14:54421087-54421366(-)$1	1	32	46	10.7238
(((((....)))))	chr17:42398546-42398801(-)$1	1	112	126	10.7238
(((((....)))))	chr17:62498269-62498494(-)$1	1	51	65	10.7238
(((((....)))))	chr19:2228265-2228507(+)$1	1	97	111	10.7238
(((((....)))))	chr17:79211180-79211444(-)$1	1	108	122	10.7238
(((((....)))))	chr1:25568833-25569128(-)$1	1	19	33	10.7238
)))))....)))))	chr16:89724493-89724758(+)$1	1	218	232	8.5451
(((.(....).)))	chr11:72534161-72534420(+)$1	1	178	192	8.7330
.(((((...)))))	chr5:179264827-179265087(-)$1	1	0	14	8.2693
(((((....)))))	chr16:28847426-28847662(+)$1	1	37	51	10.7238
(((((....)))))	chr17:2593182-2593453(-)$1	1	43	57	10.7238
(((((....)))))	chr14:21967359-21967672(-)$1	1	131	145	10.7238
(((((....)))))	chr5:172755102-172755394(-)$1	1	8	22	10.7238
((((......))))	chr17:40271104-40271356(-)$1	1	65	79	9.1213
(((((.....))))	chr17:73127285-73127556(-)$1	1	0	14	8.9109
(((((.....))))	chr19:54971742-54971991(+)$1	1	11	25	8.9109
(((((.....))))	chr6:31937133-31937369(+)$1	1	217	231	8.9109
(((((....)))))	chr19:5933405-5933653(-)$1	1	43	57	10.7238
(((((....)))))	chr5:52386506-52386748(+)$1	1	189	203	10.7238
.(((((...)))))	chr16:3729708-3729964(-)$1	1	38	52	8.2693
((((......))))	chr17:7477038-7477283(+)$1	1	63	77	9.1213
(((((.....))))	chr17:7481323-7481559(+)$1	1	192	206	8.9109
.(((((...)))))	chr16:2581166-2581421(+)$1	1	154	168	9.2795
.(((((...)))))	chr11:62566196-62566452(-)$1	1	135	149	9.2795
(((((....)))))	chr17:56082934-56083222(-)$1	1	20	34	10.7238
((((......))))	chr3:48670988-48671252(-)$1	1	14	28	9.1213
.((((....)))))	chr16:67977022-67977275(-)$1	1	148	162	5.7123

#PSSM
e : 0.83	[ : 0.10	: : 0.06	
e : 0.96	d : 0.03	
e : 0.96	d : 0.03	
e : 0.93	[ : 0.03	d : 0.03	
e : 0.79	o : 0.13	a : 0.03	d : 0.03	
m : 0.56	o : 0.13	e : 0.13	n : 0.13	4 : 0.03	
m : 0.56	o : 0.13	l : 0.13	n : 0.13	4 : 0.03	
m : 0.56	o : 0.13	l : 0.13	n : 0.13	4 : 0.03	
m : 0.56	o : 0.13	l : 0.13	n : 0.13	4 : 0.03	
e : 0.66	o : 0.13	n : 0.13	a : 0.03	d : 0.03	
e : 0.93	] : 0.03	d : 0.03	
e : 0.96	d : 0.03	
e : 0.96	d : 0.03	
e : 0.96	d : 0.03	

#score	291.07509924430985
#seq	30
#width	14
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF004IIT_TRA2A_UTR_m1_run1.txt

#BEAR
hhhhhhhuuuuuuuuuuuuhhhhh	chr22:36906864-36907123(-)$1	259	186	210	20.9881
gggggggvvvvvvvvvvvvvgggg	chr3:121414239-121414533(-)$1	294	249	273	23.0695
ggfffffftttttttttttfffff	chrX:53440081-53440319(-)$1	238	50	74	21.9745
cc!!bbwwwwwwwwwwwwwwbbcc	chr17:48820972-48821220(+)$1	248	111	135	21.1447
d####ccctttttttttttccc55	chr16:57200903-57201211(-)$1	308	58	82	21.8132
c[a[ccctttttttttttccc]a]	chr14:102550936-102551166(-)$1	230	30	54	23.0388
!!eeeeeuuuuuuuuuuuueeeee	chr11:3026528-3026764(-)$1	236	168	192	23.1780
ffffffwwwwwwwwwwwwwwffff	chr2:232577074-232577323(+)$1	249	71	95	20.9234
!bb[ddddtttttttttttdddd]	chr16:249094-249338(-)$1	244	47	71	22.6672
))))cccvvvvvvvvvvvvvccc8	chr14:102551144-102551354(-)$1	210	27	51	21.1850
dd[ddddyyyyyyyyyyyyyyyyd	chr10:70532682-70532957(+)$1	275	27	51	20.9230
###ddddwwwwwwwwwwwwwwddd	chrX:53438984-53439233(-)$1	249	145	169	21.6367
e!!eeeeettttttttttteeeee	chr4:113568256-113568612(+)$1	356	243	267	22.5418
###ddddwwwwwwwwwwwwwwddd	chr19:5600042-5600316(-)$1	274	50	74	21.6367
[fffffftttttttttttffffff	chr16:248958-249251(-)$1	293	147	171	21.3313
cc:eeeeettttttttttteeeee	chr5:71490966-71491242(+)$1	276	30	54	21.4719
bbeeeeeuuuuuuuuuuuueeeee	chr16:89349899-89350184(-)$1	285	74	98	22.4994
!!eeeeeyyyyyyyyyyyyyyyye	chr15:40488790-40489050(+)$1	260	57	81	21.1922
###ddddyyyyyyyyyyyyyyyyd	chr14:73577692-73577957(+)$1	265	38	62	21.3251
[ddddccctttttttttttccc]d	chr17:2570185-2570474(+)$1	289	198	222	23.0535
cfffffftttttttttttffffff	chr4:190862086-190862326(+)$1	240	189	213	21.2497
gggggggvvvvvvvvvvvvvgggg	chr3:142761898-142762214(+)$1	316	230	254	23.0695
Cccccccuuuuuuuuuuuuccc]c	chr19:5604501-5604739(-)$1	238	79	103	22.8339
eeeeeyyyyyyyyyyyyyyyyeee	chr14:73577601-73577875(+)$1	274	74	98	20.8744
::cccyyyyyyyyyyyyyyyyccc	chr21:38456381-38456736(+)$1	355	116	140	19.5446
hhhh[bbuuuuuuuuuuuubb]hh	chr20:34319756-34319992(-)$1	236	181	205	21.5145
ff"""ccctttttttttttccc33	chr12:123003306-123003544(-)$1	238	160	184	23.6779
dddddddvvvvvvvvvvvvvdddd	chr17:28506119-28506416(+)$1	297	122	146	22.2235
bb[eeeeettttttttttteeeee	chr19:10277173-10277461(-)$1	288	193	217	22.1143
==eeeeeuuuuuuuuuuuueeeee	chr6:99849276-99849509(-)$1	233	147	171	23.0619
!!a[ddddtttttttttttdddd]	chr11:61919561-61919805(+)$1	244	93	117	23.2859
ffffffwwwwwwwwwwwwwwffff	chr1:150667051-150667419(-)$1	368	98	122	20.9234
dddd[bbvvvvvvvvvvvvvbb]d	chr17:42477340-42477637(-)$1	297	13	37	21.6287
c[a!!bbvvvvvvvvvvvvvbb22	chr14:73577537-73577801(+)$1	264	22	46	22.4406
###ddddvvvvvvvvvvvvvdddd	chr7:102982110-102982398(-)$1	288	233	257	22.9646
ddd"""auuuuuuuuuuuua333d	chr14:73569813-73570142(+)$1	329	245	269	22.8736
f!!dddduuuuuuuuuuuudddd2	chr3:185649301-185649585(-)$1	284	9	33	23.4577
cca[ddddtttttttttttdddd2	chr6:32945889-32946185(+)$1	296	47	71	22.8696
iiiiiyyyyyyyyyyyyyyyyiii	chr13:107211879-107212105(-)$1	226	30	54	21.6459
=ffffffuuuuuuuuuuuufffff	chr7:139094283-139094501(+)$1	218	149	173	22.6113
fff!!ccctttttttttttccc33	chr6:99850315-99850604(-)$1	289	55	79	23.6517
ff"""ccctttttttttttccc33	chr12:123003283-123003506(-)$1	223	122	146	23.6779
ggggggavvvvvvvvvvvvva]gg	chr19:10261964-10262241(-)$1	277	217	241	23.1606
ffffffyyyyyyyyyyyyyyyyff	chr1:150198839-150199106(-)$1	267	114	138	20.9228
ff::cccuuuuuuuuuuuuccc::	chr7:139094208-139094429(+)$1	221	187	211	19.9721
ff[dddduuuuuuuuuuuuddddf	chr18:55282948-55283150(-)$1	202	19	43	23.2683
"a[cccwwwwwwwwwwwwwwccc]	chr16:89351573-89351820(-)$1	247	160	184	22.2421
gggdddduuuuuuuuuuuudddd]	chr1:46073038-46073298(+)$1	260	203	227	23.5288
gggggggtttttttttttgggggg	chr17:8076759-8076998(-)$1	239	189	213	22.0206
========ttttttttttt=====	chr3:42674145-42674421(+)$1	276	168	192	23.2461
i"""ddddtttttttttttdddd3	chr1:70716372-70716646(+)$1	274	134	158	23.1657
ccc!!ccctttttttttttccc22	chr15:66791636-66791857(-)$1	221	30	54	23.4757
gggggccctttttttttttccc]g	chr3:142741238-142741597(+)$1	359	262	286	23.6435
$$bb[ccctttttttttttcccbb	chr16:89348634-89348913(-)$1	279	54	78	22.0292
========ttttttttttt=====	chr8:124382004-124382280(-)$1	276	247	271	23.2461
ffffffvvvvvvvvvvvvvfffff	chrX:64737889-64738194(-)$1	305	9	33	21.7431
ccc[ddddtttttttttttdddd]	chr17:77808956-77809226(-)$1	270	44	68	23.0165
ccc[bbvvvvvvvvvvvvvbbccc	chr6:30545771-30546080(+)$1	309	73	97	22.0040
=======uuuuuuuuuuuu=====	chr7:104741772-104742096(+)$1	324	285	309	23.9328
Cccccccuuuuuuuuuuuuccc]c	chr19:5604556-5604805(-)$1	249	145	169	22.8339
gggdddduuuuuuuuuuuudddd]	chr1:46073182-46073427(+)$1	245	59	83	23.5288
ggggggguuuuuuuuuuuuggggg	chr2:175213205-175213488(-)$1	283	192	216	23.4842
===:cccvvvvvvvvvvvvvcccc	chr2:232327865-232328113(-)$1	248	85	109	22.5005
[a!!ccctttttttttttccc22a	chr13:107219820-107220101(-)$1	281	162	186	22.6482
:eeeeevvvvvvvvvvvvveeeee	chr8:92082485-92082802(+)$1	317	41	65	21.0556

#otherMatches

#Seq PSSM
GCAGAUGAAAUAAAAUAUAUAUCU	chr22:36906864-36907123(-)$1	259	186	210	20.9881
GAGCUGGAAGAAGAGAAUGACCGG	chr3:121414239-121414533(-)$1	294	249	273	23.0695
GAAGGCUGAAGAGGACACACAGUU	chrX:53440081-53440319(-)$1	238	50	74	21.9745
UGAAGGAAAAGUAGAAGAAGCCCA	chr17:48820972-48821220(+)$1	248	111	135	21.1447
UAACUGGUAACUCACAAUAACCUC	chr16:57200903-57201211(-)$1	308	58	82	21.8132
AAGAGCUCAACAAAACAAAGCCCA	chr14:102550936-102551166(-)$1	230	30	54	23.0388
GGUGAGUAAAGUGAAAAUGACUUA	chr11:3026528-3026764(-)$1	236	168	192	23.1780
UCUCCAGGUGAGGAAGAGGAUGGA	chr2:232577074-232577323(+)$1	249	71	95	20.9234
UUGUGGUGGCAGUUCUAUAUACCU	chr16:249094-249338(-)$1	244	47	71	22.6672
GGAACGUGAUAAAGAAGUAAGCGA	chr14:102551144-102551354(-)$1	210	27	51	21.1850
AAGUAAAUAAAUAAUAAAGGCAUU	chr10:70532682-70532957(+)$1	275	27	51	20.9230
AAGCACUACAAGAAGCGUAAAGGU	chrX:53438984-53439233(-)$1	249	145	169	21.6367
GUCCACUGAACCCCAAAAGCAGUG	chr4:113568256-113568612(+)$1	356	243	267	22.5418
UAAUUAAGAAGGAAGAGAAGAUUG	chr19:5600042-5600316(-)$1	274	50	74	21.6367
ACUUGGGGUUCAUUCAGAUCCGAG	chr16:248958-249251(-)$1	293	147	171	21.3313
GGAGGUUCCCAGCAAAGAAGAGCC	chr5:71490966-71491242(+)$1	276	30	54	21.4719
CCGGGCGGGACAGAAAGGACGCCC	chr16:89349899-89350184(-)$1	285	74	98	22.4994
AGCGUCUGAGGAGAAGAAAGAGAA	chr15:40488790-40489050(+)$1	260	57	81	21.1922
GCCAGUGGCAAUGCAACACCUAAC	chr14:73577692-73577957(+)$1	265	38	62	21.3251
UCCGCCAGAAAAAUAUGCAUUGAG	chr17:2570185-2570474(+)$1	289	198	222	23.0535
CUCCACCCCCGCAACUCCGGUGGA	chr4:190862086-190862326(+)$1	240	189	213	21.2497
CAGUGAAACUUAAAUUACACUUUA	chr3:142761898-142762214(+)$1	316	230	254	23.0695
GCGAAGUGAAGAAGGAAAAAUUAU	chr19:5604501-5604739(-)$1	238	79	103	22.8339
GCCUUGUCUGAAACCUACUCUGAG	chr14:73577601-73577875(+)$1	274	74	98	20.8744
gcggggaauggagaagaagaaccc	chr21:38456381-38456736(+)$1	355	116	140	19.5446
AGAUGGCAGUUUAACUUGAGUGAU	chr20:34319756-34319992(-)$1	236	181	205	21.5145
UAAGUCAUGUUGUAUUAUAAUGUA	chr12:123003306-123003544(-)$1	238	160	184	23.6779
AUCUGCAUAUAAGAAAAAACUGCA	chr17:28506119-28506416(+)$1	297	122	146	22.2235
GGCGGGUUAUUUGUUUCUGAACUC	chr19:10277173-10277461(-)$1	288	193	217	22.1143
CAGUUUUAGAACCAAAAAAAGAGC	chr6:99849276-99849509(-)$1	233	147	171	23.0619
UGGGUGGGGAAGAAAUGGGCCCAG	chr11:61919561-61919805(+)$1	244	93	117	23.2859
GGUGAGAAUGACCACUUUAACUCA	chr1:150667051-150667419(-)$1	368	98	122	20.9234
UCCUGGUGAGCCAAAUAAAAGCAA	chr17:42477340-42477637(-)$1	297	13	37	21.6287
CGCAGGCAGCCACAAAUAAAGCAA	chr14:73577537-73577801(+)$1	264	22	46	22.4406
CAUAGACAAUUUUCUUAUGAGUUU	chr7:102982110-102982398(-)$1	288	233	257	22.9646
cgggaacgagaacgggauagggac	chr14:73569813-73570142(+)$1	329	245	269	22.8736
AGCUCAGGAAUAAGUGAAGCUGAA	chr3:185649301-185649585(-)$1	284	9	33	23.4577
CCCAGGGUCCAAUAUCCAAGCCCA	chr6:32945889-32946185(+)$1	296	47	71	22.8696
AACUAGUUUUGUUUAAAUUUAUAG	chr13:107211879-107212105(-)$1	226	30	54	21.6459
AAUCUCUGUGGUUCUAAAAAGAGA	chr7:139094283-139094501(+)$1	218	149	173	22.6113
UGAGAGGAGUGACAGAGGAUCUGA	chr6:99850315-99850604(-)$1	289	55	79	23.6517
UAAGUCAUGUUGUAUUAUAAUGUA	chr12:123003283-123003506(-)$1	223	122	146	23.6779
AGGUUGCCCUCUAGUAUCUCGCCA	chr19:10261964-10262241(-)$1	277	217	241	23.1606
GAGAGGGAGAAGAGGAAGUGGGCC	chr1:150198839-150199106(-)$1	267	114	138	20.9228
AGGAGGUAUGGAGUAAUGGGCCAA	chr7:139094208-139094429(+)$1	221	187	211	19.9721
UUAUUUCUAAAUCACAGUUGAAGA	chr18:55282948-55283150(-)$1	202	19	43	23.2683
ACAUACGAUAUUGCCUGGUAGUAA	chr16:89351573-89351820(-)$1	247	160	184	22.2421
AAGGACCGAAUGAAGCUGAGGUCA	chr1:46073038-46073298(+)$1	260	203	227	23.5288
aaucaggacuugcaacacccugau	chr17:8076759-8076998(-)$1	239	189	213	22.0206
GGGUACGUGUAAAACACCAAUGUA	chr3:42674145-42674421(+)$1	276	168	192	23.2461
UCCAACUGUAUACCUGCAUCAGUG	chr1:70716372-70716646(+)$1	274	134	158	23.1657
CAGCAGCUACCAAGAAACCAGCCC	chr15:66791636-66791857(-)$1	221	30	54	23.4757
AAUGGUAAGAACAUUUUUAUUAUC	chr3:142741238-142741597(+)$1	359	262	286	23.6435
AGCGAGCCAAGAAAGAGAAGGCCG	chr16:89348634-89348913(-)$1	279	54	78	22.0292
AGAUGUAAUUAUAUUAGCUUUAUA	chr8:124382004-124382280(-)$1	276	247	271	23.2461
UGGAGCGUCAAGCCAGCCAGCUCC	chrX:64737889-64738194(-)$1	305	9	33	21.7431
GCCCGUCGUUCCAAUGUCCUGACC	chr17:77808956-77809226(-)$1	270	44	68	23.0165
CUCAGCAGCAAAAAAAAAAGCGAG	chr6:30545771-30546080(+)$1	309	73	97	22.0040
UUAUUUUCUUAAACACUUUAAAAU	chr7:104741772-104742096(+)$1	324	285	309	23.9328
GCGAAGUGAAGAAGGAAAAAUUAU	chr19:5604556-5604805(-)$1	249	145	169	22.8339
AAGGACCGAAUGAAGCUGAGGUCA	chr1:46073182-46073427(+)$1	245	59	83	23.5288
UUGUAUAGAGGAGAAAAAAUGUAC	chr2:175213205-175213488(-)$1	283	192	216	23.4842
GGCAGGUAAAAAUCAAGGUGACCC	chr2:232327865-232328113(-)$1	248	85	109	22.5005
UCGAGCGGCAGCGAAAAAUGUGAG	chr13:107219820-107220101(-)$1	281	162	186	22.6482
AGCCCCGGGUGAGGGUUGAGGGGU	chr8:92082485-92082802(+)$1	317	41	65	21.0556

#DB
(((((((............)))))	chr22:36906864-36907123(-)$1	1	186	210	20.9881
(((((((.............))))	chr3:121414239-121414533(-)$1	1	249	273	23.0695
((((((((...........)))))	chrX:53440081-53440319(-)$1	1	50	74	21.9745
((..((..............))))	chr17:48820972-48821220(+)$1	1	111	135	21.1447
(....(((...........)))..	chr16:57200903-57201211(-)$1	1	58	82	21.8132
(.(.(((...........))).).	chr14:102550936-102551166(-)$1	1	30	54	23.0388
..(((((............)))))	chr11:3026528-3026764(-)$1	1	168	192	23.1780
((((((..............))))	chr2:232577074-232577323(+)$1	1	71	95	20.9234
.((.((((...........)))).	chr16:249094-249338(-)$1	1	47	71	22.6672
....(((.............))).	chr14:102551144-102551354(-)$1	1	27	51	21.1850
((.((((................)	chr10:70532682-70532957(+)$1	1	27	51	20.9230
...((((..............)))	chrX:53438984-53439233(-)$1	1	145	169	21.6367
(..(((((...........)))))	chr4:113568256-113568612(+)$1	1	243	267	22.5418
...((((..............)))	chr19:5600042-5600316(-)$1	1	50	74	21.6367
.((((((...........))))))	chr16:248958-249251(-)$1	1	147	171	21.3313
)).(((((...........)))))	chr5:71490966-71491242(+)$1	1	30	54	21.4719
(((((((............)))))	chr16:89349899-89350184(-)$1	1	74	98	22.4994
..(((((................)	chr15:40488790-40489050(+)$1	1	57	81	21.1922
...((((................)	chr14:73577692-73577957(+)$1	1	38	62	21.3251
.(((((((...........))).)	chr17:2570185-2570474(+)$1	1	198	222	23.0535
(((((((...........))))))	chr4:190862086-190862326(+)$1	1	189	213	21.2497
(((((((.............))))	chr3:142761898-142762214(+)$1	1	230	254	23.0695
)((((((............))).)	chr19:5604501-5604739(-)$1	1	79	103	22.8339
(((((................)))	chr14:73577601-73577875(+)$1	1	74	98	20.8744
..(((................)))	chr21:38456381-38456736(+)$1	1	116	140	19.5446
((((.((............)).))	chr20:34319756-34319992(-)$1	1	181	205	21.5145
((...(((...........)))..	chr12:123003306-123003544(-)$1	1	160	184	23.6779
)))((((.............))))	chr17:28506119-28506416(+)$1	1	122	146	22.2235
((.(((((...........)))))	chr19:10277173-10277461(-)$1	1	193	217	22.1143
))(((((............)))))	chr6:99849276-99849509(-)$1	1	147	171	23.0619
..(.((((...........)))).	chr11:61919561-61919805(+)$1	1	93	117	23.2859
((((((..............))))	chr1:150667051-150667419(-)$1	1	98	122	20.9234
((((.((.............)).)	chr17:42477340-42477637(-)$1	1	13	37	21.6287
(.(..((.............))..	chr14:73577537-73577801(+)$1	1	22	46	22.4406
...((((.............))))	chr7:102982110-102982398(-)$1	1	233	257	22.9646
(((...(............)...)	chr14:73569813-73570142(+)$1	1	245	269	22.8736
(..((((............)))).	chr3:185649301-185649585(-)$1	1	9	33	23.4577
(((.((((...........)))).	chr6:32945889-32946185(+)$1	1	47	71	22.8696
(((((................)))	chr13:107211879-107212105(-)$1	1	30	54	21.6459
(((((((............)))))	chr7:139094283-139094501(+)$1	1	149	173	22.6113
(((..(((...........)))..	chr6:99850315-99850604(-)$1	1	55	79	23.6517
((...(((...........)))..	chr12:123003283-123003506(-)$1	1	122	146	23.6779
(((((((.............).))	chr19:10261964-10262241(-)$1	1	217	241	23.1606
((((((................))	chr1:150198839-150199106(-)$1	1	114	138	20.9228
))..(((............)))..	chr7:139094208-139094429(+)$1	1	187	211	19.9721
((.((((............)))))	chr18:55282948-55283150(-)$1	1	19	43	23.2683
.(.(((..............))).	chr16:89351573-89351820(-)$1	1	160	184	22.2421
(((((((............)))).	chr1:46073038-46073298(+)$1	1	203	227	23.5288
(((((((...........))))))	chr17:8076759-8076998(-)$1	1	189	213	22.0206
((((((((...........)))))	chr3:42674145-42674421(+)$1	1	168	192	23.2461
(...((((...........)))).	chr1:70716372-70716646(+)$1	1	134	158	23.1657
(((..(((...........)))..	chr15:66791636-66791857(-)$1	1	30	54	23.4757
((((((((...........))).)	chr3:142741238-142741597(+)$1	1	262	286	23.6435
..((.(((...........)))))	chr16:89348634-89348913(-)$1	1	54	78	22.0292
((((((((...........)))))	chr8:124382004-124382280(-)$1	1	247	271	23.2461
((((((.............)))))	chrX:64737889-64738194(-)$1	1	9	33	21.7431
(((.((((...........)))).	chr17:77808956-77809226(-)$1	1	44	68	23.0165
(((.((.............)))))	chr6:30545771-30546080(+)$1	1	73	97	22.0040
(((((((............)))))	chr7:104741772-104742096(+)$1	1	285	309	23.9328
)((((((............))).)	chr19:5604556-5604805(-)$1	1	145	169	22.8339
(((((((............)))).	chr1:46073182-46073427(+)$1	1	59	83	23.5288
(((((((............)))))	chr2:175213205-175213488(-)$1	1	192	216	23.4842
))).(((.............)))(	chr2:232327865-232328113(-)$1	1	85	109	22.5005
.(..(((...........)))..)	chr13:107219820-107220101(-)$1	1	162	186	22.6482
.(((((.............)))))	chr8:92082485-92082802(+)$1	1	41	65	21.0556

#PSSM
f : 0.15	g : 0.13	c : 0.13	= : 0.09	d : 0.07	! : 0.06	# : 0.06	[ : 0.04	h : 0.03	e : 0.03	b : 0.03	C : 0.03	: : 0.03	i : 0.03	) : 0.01	" : 0.01	$ : 0.01	
f : 0.18	g : 0.13	c : 0.12	# : 0.07	! : 0.07	d : 0.07	= : 0.07	b : 0.04	h : 0.03	[ : 0.03	e : 0.03	a : 0.03	) : 0.01	: : 0.01	i : 0.01	" : 0.01	$ : 0.01	
f : 0.13	g : 0.12	e : 0.09	c : 0.09	# : 0.07	! : 0.06	a : 0.06	[ : 0.06	d : 0.06	= : 0.06	" : 0.04	h : 0.03	b : 0.03	: : 0.03	) : 0.01	i : 0.01	
d : 0.18	e : 0.13	f : 0.12	g : 0.09	[ : 0.09	! : 0.07	c : 0.06	" : 0.06	= : 0.04	h : 0.03	: : 0.03	# : 0.01	) : 0.01	i : 0.01	b : 0.01	
d : 0.24	c : 0.13	e : 0.13	f : 0.12	g : 0.09	[ : 0.04	" : 0.04	! : 0.04	= : 0.04	b : 0.03	h : 0.01	# : 0.01	i : 0.01	
c : 0.24	d : 0.23	f : 0.12	e : 0.12	g : 0.07	b : 0.07	y : 0.04	= : 0.04	h : 0.01	" : 0.01	
c : 0.23	d : 0.23	e : 0.10	g : 0.06	f : 0.06	w : 0.06	y : 0.06	b : 0.04	= : 0.04	v : 0.04	a : 0.03	h : 0.01	
u : 0.24	v : 0.18	c : 0.12	y : 0.10	w : 0.09	t : 0.07	d : 0.07	e : 0.04	= : 0.03	f : 0.01	
t : 0.36	u : 0.24	v : 0.18	y : 0.10	w : 0.09	
t : 0.36	u : 0.24	v : 0.18	y : 0.10	w : 0.09	
t : 0.36	u : 0.24	v : 0.18	y : 0.10	w : 0.09	
t : 0.36	u : 0.24	v : 0.18	y : 0.10	w : 0.09	
t : 0.36	u : 0.24	v : 0.18	y : 0.10	w : 0.09	
t : 0.36	u : 0.24	v : 0.18	y : 0.10	w : 0.09	
t : 0.36	u : 0.24	v : 0.18	y : 0.10	w : 0.09	
t : 0.36	u : 0.24	v : 0.18	y : 0.10	w : 0.09	
t : 0.36	u : 0.24	v : 0.18	y : 0.10	w : 0.09	
t : 0.36	u : 0.24	v : 0.18	y : 0.10	w : 0.09	
t : 0.29	u : 0.24	v : 0.18	y : 0.10	w : 0.09	c : 0.03	f : 0.03	g : 0.01	
c : 0.20	v : 0.13	d : 0.13	e : 0.10	y : 0.10	w : 0.09	f : 0.07	= : 0.04	b : 0.03	g : 0.03	h : 0.01	a : 0.01	
c : 0.24	d : 0.16	f : 0.10	e : 0.10	y : 0.10	b : 0.07	g : 0.06	= : 0.04	w : 0.03	h : 0.01	3 : 0.01	a : 0.01	
c : 0.24	d : 0.20	e : 0.12	f : 0.10	g : 0.06	y : 0.06	b : 0.04	] : 0.04	= : 0.04	h : 0.01	3 : 0.01	i : 0.01	2 : 0.01	
d : 0.20	f : 0.12	e : 0.12	c : 0.09	g : 0.07	] : 0.07	3 : 0.06	y : 0.04	2 : 0.04	= : 0.04	h : 0.03	5 : 0.01	a : 0.01	i : 0.01	: : 0.01	b : 0.01	
f : 0.13	e : 0.13	d : 0.13	] : 0.10	g : 0.09	c : 0.09	3 : 0.06	2 : 0.06	= : 0.04	h : 0.03	5 : 0.01	8 : 0.01	i : 0.01	: : 0.01	b : 0.01	a : 0.01	

#score	1450.4614777334284
#seq	65
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374PBK_UCHL5_transcript_m1_run2.txt

#BEAR
bb[ccctttttttttttcccbb]	chr17:40725397-40725665(-)$1	268	147	170	21.6590
ffffvvvvvvvvvvvvvffffff	chr19:10291137-10291346(-)$1	209	123	146	21.9270
ggggggtttttttttttgggggg	chr1:231359945-231360259(-)$1	314	220	243	22.0698
!ddddwwwwwwwwwwwwwwdddd	chr4:39881258-39881554(-)$1	296	243	266	22.1226
ffffvvvvvvvvvvvvvffffff	chr17:58422852-58423070(-)$1	218	148	171	21.9270
ddcccvvvvvvvvvvvvvccc]d	chr15:83222529-83222827(-)$1	298	180	203	23.3798
eeeeewwwwwwwwwwwwwweeee	chr5:68463751-68464001(+)$1	250	213	236	21.7034
e[cccvvvvvvvvvvvvvcccee	chr20:45874830-45875089(-)$1	259	196	219	23.5841
[ddddvvvvvvvvvvvvvdddd2	chr1:158650384-158650614(-)$1	230	121	144	23.2646
&&cccuuuuuuuuuuuuccc333	chr1:225122537-225122842(+)$1	305	264	287	22.5997
!ddddvvvvvvvvvvvvvdddde	chr1:203017072-203017366(+)$1	294	231	254	23.3644
======ttttttttttt======	chr11:120319716-120320024(+)$1	308	86	109	22.5831
ii!!auuuuuuuuuuuua22iii	chr5:131953761-131954014(+)$1	253	52	75	23.0934
ggggguuuuuuuuuuuugggggg	chr4:68378019-68378249(-)$1	230	101	124	23.2301
eeeeevvvvvvvvvvvvveeeee	chr12:56814647-56814882(-)$1	235	59	82	22.8494
=====vvvvvvvvvvvvv=====	chr2:17897251-17897541(-)$1	290	260	283	23.5570
fffffuuuuuuuuuuuuffffff	chr11:43465567-43465866(+)$1	299	40	63	22.3255
eyyyyyyyyyyyyyyyyeeeee4	chr15:83495425-83495694(+)$1	269	212	235	19.3510
eeeeevvvvvvvvvvvvveeeee	chr2:27822349-27822603(+)$1	254	25	48	22.8494
d!!bbuuuuuuuuuuuubb22dd	chr2:11341334-11341594(-)$1	260	202	225	22.0951
:dddduuuuuuuuuuuudddd::	chr9:33036483-33036738(+)$1	255	168	191	20.5165
gggggvvvvvvvvvvvvvggggg	chr8:21958823-21959094(+)$1	271	91	114	23.2025
[dddduuuuuuuuuuuudddd]c	chr11:93416628-93416839(+)$1	211	33	56	23.4750
e[ddddtttttttttttdddd22	chr7:72891100-72891452(-)$1	352	115	138	22.1176
iiiiwwwwwwwwwwwwwwiiiii	chr10:79799861-79800069(+)$1	208	35	58	22.0175
ggggggtttttttttttgggggg	chr17:7127186-7127396(+)$1	210	126	149	22.0698
ccc!!attttttttttta22ccc	chr16:30722056-30722275(+)$1	219	125	148	22.3326
[cccvvvvvvvvvvvvvccc]a4	chr12:80214449-80214768(-)$1	319	164	187	23.2212
c[cccuuuuuuuuuuuuccc]cc	chr12:132519262-132519531(+)$1	269	211	234	23.7707
""bbwwwwwwwwwwwwwwbb333	chr18:43671546-43671766(-)$1	220	29	52	21.2478
=====uuuuuuuuuuuu======	chr6:31636795-31637082(+)$1	287	251	274	23.6851
a[ccctttttttttttccc]a66	chr8:103300300-103300530(-)$1	230	93	116	21.3766
addddvvvvvvvvvvvvvdddd4	chr11:57077674-57077926(-)$1	252	129	152	23.2733
!dddduuuuuuuuuuuudddd]d	chr18:215328-215557(-)$1	229	58	81	23.4465
:ddddwwwwwwwwwwwwwwdddd	chr3:37343667-37343887(+)$1	220	124	147	21.0607
:ddddwwwwwwwwwwwwwwdddd	chr5:154173262-154173498(+)$1	236	93	116	21.0607
[cccvvvvvvvvvvvvvccc]cc	chr5:77467315-77467596(-)$1	281	67	90	23.1688
[dddduuuuuuuuuuuudddd]d	chr2:242174885-242175108(-)$1	223	127	150	23.4454
!dddduuuuuuuuuuuudddd22	chr11:110108125-110108403(-)$1	278	96	119	23.2017
c[cccuuuuuuuuuuuuccc]cc	chr17:34937801-34938070(+)$1	269	89	112	23.7707
dddyyyyyyyyyyyyyyyydddd	chr11:62296647-62296943(-)$1	296	86	109	20.5376
d[bbyyyyyyyyyyyyyyyybb]	chr18:45422824-45423100(-)$1	276	115	138	19.6873
dddyyyyyyyyyyyyyyyydddd	chr11:62296814-62297059(-)$1	245	202	225	20.5376
eecccuuuuuuuuuuuuccc:::	chr1:32622354-32622581(+)$1	227	79	102	20.8818
dd[bbuuuuuuuuuuuubb]ddd	chr15:49034098-49034353(-)$1	255	178	201	22.4191
e[cccwwwwwwwwwwwwwwccce	chr8:61654156-61654446(+)$1	290	56	79	22.2675
b[ccctttttttttttccc]bb]	chr6:52132561-52132815(-)$1	254	168	191	21.6138
"dddduuuuuuuuuuuudddd33	chr18:75690235-75690463(-)$1	228	103	126	23.5470
ddddvvvvvvvvvvvvvdddd66	chr17:34869370-34869640(-)$1	270	64	87	21.8126
:ddddwwwwwwwwwwwwwwdddd	chr20:62612512-62612743(+)$1	231	87	110	21.0607
e[ddddtttttttttttdddd]e	chr1:50941100-50941365(-)$1	265	147	170	22.4055
ggggguuuuuuuuuuuugggggg	chr15:30053830-30054072(-)$1	242	183	206	23.2301
eeeewwwwwwwwwwwwwweeeee	chr2:24046035-24046299(-)$1	264	217	240	21.6943
fffffuuuuuuuuuuuuffffff	chr6:52133859-52134092(-)$1	233	74	97	22.3255
fffffftttttttttttffffff	chrX:70517691-70517896(+)$1	205	13	36	21.2640
[ddddwwwwwwwwwwwwwwdddd	chr12:133237340-133237595(-)$1	255	205	228	22.1215
!!cccuuuuuuuuuuuuccc22g	chr8:106456405-106456710(+)$1	305	99	122	23.5999
fffffftttttttttttffffff	chr7:40041358-40041633(+)$1	275	29	52	21.2640
eeeebbtttttttttttbb]eee	chr6:52938175-52938476(+)$1	301	28	51	21.5583
ceeeeettttttttttteeeee]	chr1:180031265-180031503(+)$1	238	68	91	21.7708
d[a[auuuuuuuuuuuua]a]dd	chr22:24718507-24718751(+)$1	244	41	64	23.2376
fffffftttttttttttffffff	chr1:22048077-22048340(-)$1	263	184	207	21.2640
eeddddtttttttttttdddd22	chr16:31202619-31202831(+)$1	212	126	149	21.9757
eeeeewwwwwwwwwwwwwweeee	chr19:2111578-2111802(-)$1	224	129	152	21.7034
fff[bbtttttttttttbb22ff	chr1:23644874-23645145(-)$1	271	55	78	20.8979
ggggggtttttttttttgggggg	chr7:99621022-99621281(+)$1	259	217	240	22.0698
ee[bbvvvvvvvvvvvvvbb]ee	chr3:52727954-52728219(+)$1	265	117	140	22.3489
gggccctttttttttttcccccc	chr5:37605129-37605419(+)$1	290	123	146	22.7176
!!ccctttttttttttccc]bbf	chr17:65924599-65924802(+)$1	203	101	124	21.8233
iiiiiuuuuuuuuuuuuiiiiii	chr3:140692456-140692701(+)$1	245	94	117	23.2839
eeeeeyyyyyyyyyyyyyyyyee	chr11:46811545-46811821(-)$1	276	46	69	20.0772

#otherMatches

#Seq PSSM
UGACUCCAGAAGAGAAAGAGCAG	chr17:40725397-40725665(-)$1	268	147	170	21.6590
AAUCCCUUUUAAAUAAAGAUUUG	chr19:10291137-10291346(-)$1	209	123	146	21.9270
AGAGUGGCCAAAUGAAGUACUUU	chr1:231359945-231360259(-)$1	314	220	243	22.0698
UGGGGUCAUAAUUUGCCUUCCCU	chr4:39881258-39881554(-)$1	296	243	266	22.1226
UGUGGACUCUCAUAUUACAUGGG	chr17:58422852-58423070(-)$1	218	148	171	21.9270
UCCUUGGGAUAUUACAGAAGGUG	chr15:83222529-83222827(-)$1	298	180	203	23.3798
GCAGAAACAUUUCAUUCUCUCUG	chr5:68463751-68464001(+)$1	250	213	236	21.7034
GAGACGGAUUCCCCAACAGUCCA	chr20:45874830-45875089(-)$1	259	196	219	23.5841
AGGUGAAGACUGGGAGCGCACCG	chr1:158650384-158650614(-)$1	230	121	144	23.2646
aggaggaagggaaagcacucaaa	chr1:225122537-225122842(+)$1	305	264	287	22.5997
AGCAGGAAGAACAGAGAUCUGCG	chr1:203017072-203017366(+)$1	294	231	254	23.3644
GUACUUCAACUCUAGCAAAGUAU	chr11:120319716-120320024(+)$1	308	86	109	22.5831
UUGGCAUUAGGGCGACAGAAAGG	chr5:131953761-131954014(+)$1	253	52	75	23.0934
UGAUUGGUGGGUGGUAAAAUCAG	chr4:68378019-68378249(-)$1	230	101	124	23.2301
GGGCUCAGAAGCAGAACAAGUCC	chr12:56814647-56814882(-)$1	235	59	82	22.8494
AAGUUUUCGAAAUAAAAUGAUUU	chr2:17897251-17897541(-)$1	290	260	283	23.5570
UACAUUCCAGGUCAAACGUGUAA	chr11:43465567-43465866(+)$1	299	40	63	22.3255
GAAAUAACUGAAGACCACCCUAA	chr15:83495425-83495694(+)$1	269	212	235	19.3510
UGUUUUGAAGACAGGCCUAGAUG	chr2:27822349-27822603(+)$1	254	25	48	22.8494
uuugcuccuagaacaaugccugg	chr2:11341334-11341594(-)$1	260	202	225	22.0951
UUGACAACCGAACCAUCGUCAUC	chr9:33036483-33036738(+)$1	255	168	191	20.5165
GCCGGGAGCGCCUCCACACCGGC	chr8:21958823-21959094(+)$1	271	91	114	23.2025
AUUGUUAAUAUUACCAUACAAAG	chr11:93416628-93416839(+)$1	211	33	56	23.4750
UGAUAGGAAAAAAGAAAUUGUGA	chr7:72891100-72891452(-)$1	352	115	138	22.1176
GGGACUAUUAAUGAAAUCUUUCU	chr10:79799861-79800069(+)$1	208	35	58	22.0175
AGAUCUUCGCAUCUUCCGGAUCU	chr17:7127186-7127396(+)$1	210	126	149	22.0698
GGUUUGUCCUAUUGCCCCUUACC	chr16:30722056-30722275(+)$1	219	125	148	22.3326
GCUCUAGUGAAGAAGAUGAGGAA	chr12:80214449-80214768(-)$1	319	164	187	23.2212
GAGACAGGAAGCCAAGCGUUGUA	chr12:132519262-132519531(+)$1	269	211	234	23.7707
GUCUUAAGUAUUGGUGAUGGUAU	chr18:43671546-43671766(-)$1	220	29	52	21.2478
AGGUAGGAAUAGGGGGAUACCUG	chr6:31636795-31637082(+)$1	287	251	274	23.6851
CACGGGGAAGAAAAUGCUGAGGC	chr8:103300300-103300530(-)$1	230	93	116	21.3766
CGGCCAGGAGGAGAUGGAGGCCA	chr11:57077674-57077926(-)$1	252	129	152	23.2733
UUCUGAAGAAAUAAAAACAGGUG	chr18:215328-215557(-)$1	229	58	81	23.4465
ACGGGAACAGAAAGAAAAGUCCG	chr3:37343667-37343887(+)$1	220	124	147	21.0607
AUAGGGUCUGAGUCUGCCACCUA	chr5:154173262-154173498(+)$1	236	93	116	21.0607
gaggaagucaaauugucccuguu	chr5:77467315-77467596(-)$1	281	67	90	23.1688
AGGUGCCCUUUGACCUUCACCGU	chr2:242174885-242175108(-)$1	223	127	150	23.4454
ACGACUUGAAAAGGAGCGUCGAG	chr11:110108125-110108403(-)$1	278	96	119	23.2017
AGACGAAAAAAUAAGUGUGUGUG	chr17:34937801-34938070(+)$1	269	89	112	23.7707
GUAGAAGGUGAAAUGAAAGUGCC	chr11:62296647-62296943(-)$1	296	86	109	20.5376
UGGUGAAGAAGCUAAAGAAAACA	chr18:45422824-45423100(-)$1	276	115	138	19.6873
GUAGAAGGUGAAAUGAAAGUGCC	chr11:62296814-62297059(-)$1	245	202	225	20.5376
CACUGUCUCUUUACUUUCAGCUU	chr1:32622354-32622581(+)$1	227	79	102	20.8818
CAACAGAUUUUGCAGGAUGAUGG	chr15:49034098-49034353(-)$1	255	178	201	22.4191
GUAUGAACAACAAAAGAUGCAUC	chr8:61654156-61654446(+)$1	290	56	79	22.2675
CAAAUGAGAUUAAAAAGUUAGUG	chr6:52132561-52132815(-)$1	254	168	191	21.6138
AUGGCAUACUUUUCAAAGCUAGA	chr18:75690235-75690463(-)$1	228	103	126	23.5470
CUCCACAGAUUUGCAAAGGAGCC	chr17:34869370-34869640(-)$1	270	64	87	21.8126
UGAACAAGAAGAAGAAACCGUUC	chr20:62612512-62612743(+)$1	231	87	110	21.0607
UCCAGAUUGUCUUUGAUUUUGUA	chr1:50941100-50941365(-)$1	265	147	170	22.4055
AGUUCAAAGAGAUGAACGGGCUA	chr15:30053830-30054072(-)$1	242	183	206	23.2301
GGAAUAAAUAAAUAUAGUUUCCU	chr2:24046035-24046299(-)$1	264	217	240	21.6943
CCAGUUACAGCCCGAACACUGGA	chr6:52133859-52134092(-)$1	233	74	97	22.3255
CGCCGUGAAGAAGAGAUGCGGCG	chrX:70517691-70517896(+)$1	205	13	36	21.2640
CCCCUCAACUUCUGCAUCCAGGG	chr12:133237340-133237595(-)$1	255	205	228	22.1215
CAGGUGAUGAUGAAGGAAUCCAG	chr8:106456405-106456710(+)$1	305	99	122	23.5999
ACAUUUAAAGUUAAGAAAAAUGU	chr7:40041358-40041633(+)$1	275	29	52	21.2640
UGGACAUAUUGAUACAUUGUUCC	chr6:52938175-52938476(+)$1	301	28	51	21.5583
UCUUAACUCUUUAAACCUUAGGC	chr1:180031265-180031503(+)$1	238	68	91	21.7708
UAGGGGCACUCAAAGAACGCAGU	chr22:24718507-24718751(+)$1	244	41	64	23.2376
GCAGCAGUAAAGGGGUAUGUUGC	chr1:22048077-22048340(-)$1	263	184	207	21.2640
AGAGGCCGUAUUAAUUAGCCUGG	chr16:31202619-31202831(+)$1	212	126	149	21.9757
GGGGUACUUCAGCGCCCCCGCCC	chr19:2111578-2111802(-)$1	224	129	152	21.7034
AGCAGCACAAGCCAGACGCCGGC	chr1:23644874-23645145(-)$1	271	55	78	20.8979
GUGGGGGCAGGAUUCCACCCUAC	chr7:99621022-99621281(+)$1	259	217	240	22.0698
UUGCUGCAGAAGAGACAGGGGAG	chr3:52727954-52728219(+)$1	265	117	140	22.3489
CACUACGUGCACAUAUAGUAGAG	chr5:37605129-37605419(+)$1	290	123	146	22.7176
AGGCCAGUCAAAUUCAGGUAUGG	chr17:65924599-65924802(+)$1	203	101	124	21.8233
UUUUCAGGAACCGCGGGGAAAGG	chr3:140692456-140692701(+)$1	245	94	117	23.2839
AAGCAAUUCCUAAUUCUAAUAUG	chr11:46811545-46811821(-)$1	276	46	69	20.0772

#DB
((.(((...........))))).	chr17:40725397-40725665(-)$1	1	147	170	21.6590
((((.............))))))	chr19:10291137-10291346(-)$1	1	123	146	21.9270
((((((...........))))))	chr1:231359945-231360259(-)$1	1	220	243	22.0698
.((((..............))))	chr4:39881258-39881554(-)$1	1	243	266	22.1226
((((.............))))))	chr17:58422852-58423070(-)$1	1	148	171	21.9270
(((((.............))).)	chr15:83222529-83222827(-)$1	1	180	203	23.3798
(((((..............))))	chr5:68463751-68464001(+)$1	1	213	236	21.7034
(.(((.............)))))	chr20:45874830-45875089(-)$1	1	196	219	23.5841
.((((.............)))).	chr1:158650384-158650614(-)$1	1	121	144	23.2646
..(((............)))...	chr1:225122537-225122842(+)$1	1	264	287	22.5997
.((((.............)))))	chr1:203017072-203017366(+)$1	1	231	254	23.3644
((((((...........))))))	chr11:120319716-120320024(+)$1	1	86	109	22.5831
((..(............)..)))	chr5:131953761-131954014(+)$1	1	52	75	23.0934
(((((............))))))	chr4:68378019-68378249(-)$1	1	101	124	23.2301
(((((.............)))))	chr12:56814647-56814882(-)$1	1	59	82	22.8494
(((((.............)))))	chr2:17897251-17897541(-)$1	1	260	283	23.5570
(((((............))))))	chr11:43465567-43465866(+)$1	1	40	63	22.3255
(................))))).	chr15:83495425-83495694(+)$1	1	212	235	19.3510
(((((.............)))))	chr2:27822349-27822603(+)$1	1	25	48	22.8494
(..((............))..))	chr2:11341334-11341594(-)$1	1	202	225	22.0951
.((((............))))..	chr9:33036483-33036738(+)$1	1	168	191	20.5165
(((((.............)))))	chr8:21958823-21959094(+)$1	1	91	114	23.2025
.((((............)))).)	chr11:93416628-93416839(+)$1	1	33	56	23.4750
(.((((...........))))..	chr7:72891100-72891452(-)$1	1	115	138	22.1176
((((..............)))))	chr10:79799861-79800069(+)$1	1	35	58	22.0175
((((((...........))))))	chr17:7127186-7127396(+)$1	1	126	149	22.0698
(((..(...........)..)))	chr16:30722056-30722275(+)$1	1	125	148	22.3326
.(((.............))).).	chr12:80214449-80214768(-)$1	1	164	187	23.2212
(.(((............))).))	chr12:132519262-132519531(+)$1	1	211	234	23.7707
..((..............))...	chr18:43671546-43671766(-)$1	1	29	52	21.2478
(((((............))))))	chr6:31636795-31637082(+)$1	1	251	274	23.6851
(.(((...........))).)..	chr8:103300300-103300530(-)$1	1	93	116	21.3766
(((((.............)))).	chr11:57077674-57077926(-)$1	1	129	152	23.2733
.((((............)))).)	chr18:215328-215557(-)$1	1	58	81	23.4465
.((((..............))))	chr3:37343667-37343887(+)$1	1	124	147	21.0607
.((((..............))))	chr5:154173262-154173498(+)$1	1	93	116	21.0607
.(((.............))).))	chr5:77467315-77467596(-)$1	1	67	90	23.1688
.((((............)))).)	chr2:242174885-242175108(-)$1	1	127	150	23.4454
.((((............))))..	chr11:110108125-110108403(-)$1	1	96	119	23.2017
(.(((............))).))	chr17:34937801-34938070(+)$1	1	89	112	23.7707
(((................))))	chr11:62296647-62296943(-)$1	1	86	109	20.5376
(.((................)).	chr18:45422824-45423100(-)$1	1	115	138	19.6873
(((................))))	chr11:62296814-62297059(-)$1	1	202	225	20.5376
))(((............)))...	chr1:32622354-32622581(+)$1	1	79	102	20.8818
((.((............)).)))	chr15:49034098-49034353(-)$1	1	178	201	22.4191
(.(((..............))))	chr8:61654156-61654446(+)$1	1	56	79	22.2675
(.(((...........))).)).	chr6:52132561-52132815(-)$1	1	168	191	21.6138
.((((............))))..	chr18:75690235-75690463(-)$1	1	103	126	23.5470
((((.............))))..	chr17:34869370-34869640(-)$1	1	64	87	21.8126
.((((..............))))	chr20:62612512-62612743(+)$1	1	87	110	21.0607
(.((((...........)))).)	chr1:50941100-50941365(-)$1	1	147	170	22.4055
(((((............))))))	chr15:30053830-30054072(-)$1	1	183	206	23.2301
((((..............)))))	chr2:24046035-24046299(-)$1	1	217	240	21.6943
(((((............))))))	chr6:52133859-52134092(-)$1	1	74	97	22.3255
((((((...........))))))	chrX:70517691-70517896(+)$1	1	13	36	21.2640
.((((..............))))	chr12:133237340-133237595(-)$1	1	205	228	22.1215
..(((............)))..)	chr8:106456405-106456710(+)$1	1	99	122	23.5999
((((((...........))))))	chr7:40041358-40041633(+)$1	1	29	52	21.2640
((((((...........)).)))	chr6:52938175-52938476(+)$1	1	28	51	21.5583
((((((...........))))).	chr1:180031265-180031503(+)$1	1	68	91	21.7708
(.(.(............).).))	chr22:24718507-24718751(+)$1	1	41	64	23.2376
((((((...........))))))	chr1:22048077-22048340(-)$1	1	184	207	21.2640
((((((...........))))..	chr16:31202619-31202831(+)$1	1	126	149	21.9757
(((((..............))))	chr19:2111578-2111802(-)$1	1	129	152	21.7034
(((.((...........))..))	chr1:23644874-23645145(-)$1	1	55	78	20.8979
((((((...........))))))	chr7:99621022-99621281(+)$1	1	217	240	22.0698
((.((.............)).))	chr3:52727954-52728219(+)$1	1	117	140	22.3489
)))(((...........)))(((	chr5:37605129-37605419(+)$1	1	123	146	22.7176
..(((...........))).))(	chr17:65924599-65924802(+)$1	1	101	124	21.8233
(((((............))))))	chr3:140692456-140692701(+)$1	1	94	117	23.2839
(((((................))	chr11:46811545-46811821(-)$1	1	46	69	20.0772

#PSSM
e : 0.21	f : 0.11	d : 0.11	g : 0.09	! : 0.08	[ : 0.08	: : 0.05	c : 0.05	= : 0.04	i : 0.04	b : 0.02	" : 0.02	a : 0.02	& : 0.01	
d : 0.26	e : 0.15	[ : 0.14	f : 0.11	g : 0.09	= : 0.04	i : 0.04	! : 0.04	c : 0.04	b : 0.01	& : 0.01	y : 0.01	" : 0.01	
d : 0.28	c : 0.19	f : 0.11	e : 0.11	g : 0.09	[ : 0.04	= : 0.04	! : 0.02	i : 0.02	b : 0.02	y : 0.01	a : 0.01	
d : 0.25	c : 0.21	e : 0.11	f : 0.09	g : 0.08	b : 0.07	= : 0.04	y : 0.04	! : 0.02	i : 0.02	[ : 0.02	
d : 0.23	c : 0.18	g : 0.08	e : 0.08	v : 0.07	f : 0.07	b : 0.07	y : 0.05	= : 0.04	w : 0.04	a : 0.02	! : 0.01	i : 0.01	
u : 0.29	v : 0.21	w : 0.15	y : 0.07	g : 0.04	d : 0.04	t : 0.04	f : 0.04	c : 0.02	b : 0.02	= : 0.01	a : 0.01	e : 0.01	
u : 0.29	t : 0.26	v : 0.21	w : 0.15	y : 0.07	
u : 0.29	t : 0.26	v : 0.21	w : 0.15	y : 0.07	
u : 0.29	t : 0.26	v : 0.21	w : 0.15	y : 0.07	
u : 0.29	t : 0.26	v : 0.21	w : 0.15	y : 0.07	
u : 0.29	t : 0.26	v : 0.21	w : 0.15	y : 0.07	
u : 0.29	t : 0.26	v : 0.21	w : 0.15	y : 0.07	
u : 0.29	t : 0.26	v : 0.21	w : 0.15	y : 0.07	
u : 0.29	t : 0.26	v : 0.21	w : 0.15	y : 0.07	
u : 0.29	t : 0.26	v : 0.21	w : 0.15	y : 0.07	
u : 0.29	t : 0.26	v : 0.21	w : 0.15	y : 0.07	
u : 0.29	t : 0.22	v : 0.21	w : 0.15	y : 0.07	c : 0.04	
c : 0.16	w : 0.15	v : 0.14	d : 0.14	f : 0.09	g : 0.07	b : 0.05	y : 0.05	a : 0.04	= : 0.02	e : 0.02	i : 0.01	
c : 0.19	d : 0.18	w : 0.11	f : 0.09	g : 0.08	b : 0.08	e : 0.07	y : 0.05	= : 0.04	2 : 0.02	i : 0.02	] : 0.01	
d : 0.28	c : 0.16	f : 0.09	e : 0.09	g : 0.08	] : 0.07	2 : 0.05	= : 0.04	i : 0.02	b : 0.02	y : 0.02	a : 0.01	
d : 0.29	e : 0.11	f : 0.09	g : 0.08	] : 0.08	c : 0.07	b : 0.05	= : 0.04	i : 0.04	2 : 0.04	3 : 0.02	a : 0.01	: : 0.01	y : 0.01	
d : 0.18	e : 0.15	f : 0.11	g : 0.08	c : 0.08	] : 0.07	b : 0.05	2 : 0.05	3 : 0.04	= : 0.04	i : 0.04	: : 0.02	6 : 0.02	a : 0.01	
d : 0.18	e : 0.16	f : 0.12	g : 0.09	c : 0.08	] : 0.05	2 : 0.05	3 : 0.04	= : 0.04	i : 0.04	4 : 0.04	: : 0.02	6 : 0.02	

#score	1577.997377114021
#seq	71
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_CDS_m3_run2.txt

#BEAR
ccccqqqqqqqqccc]	chr1:150526324-150526575(+)$1	251	16	32	14.1025
ddddqqqqqqqqdddd	chr3:47452260-47452592(+)$1	332	88	104	15.1406
ddddqqqqqqqqdddd	chr8:145065475-145065819(+)$1	344	29	45	15.1406
ccccqqqqqqqqccc]	chr1:150526183-150526514(+)$1	331	157	173	14.1025
ddddqqqqqqqqdddd	chr1:171526794-171527081(+)$1	287	54	70	15.1406
ddddqqqqqqqqdddd	chr16:30735036-30735310(+)$1	274	239	255	15.1406
[cccqqqqqqqqccc]	chr6:30709536-30709833(-)$1	297	87	103	14.1777
ddddqqqqqqqqdddd	chr17:7417015-7417274(+)$1	259	37	53	15.1406
ddddqqqqqqqqdddd	chr2:242694542-242694845(+)$1	303	21	37	15.1406
eeeeqqqqqqqqeeee	chr16:2817903-2818189(+)$1	286	45	61	13.3891
!cccqqqqqqqqcccb	chrX:53263328-53263614(-)$1	286	179	195	13.8278
eeeeqqqqqqqqeeee	chr19:15353639-15353943(-)$1	304	284	300	13.3891
eeeeqqqqqqqqeeee	chr16:2817844-2818103(+)$1	259	104	120	13.3891
"cccqqqqqqqqccc3	chr3:47451498-47451806(+)$1	308	51	67	14.1923
ddddqqqqqqqqdddd	chr1:27736280-27736585(-)$1	305	38	54	15.1406
!cccqqqqqqqqccc2	chr17:65941612-65941953(+)$1	341	16	32	14.0862
$cccqqqqqqqqccc6	chr19:54969692-54969979(+)$1	287	90	106	13.5310
!cccqqqqqqqqcccd	chr17:80708447-80708700(+)$1	253	34	50	14.4076
ddddqqqqqqqqdddd	chr19:17346735-17347002(-)$1	267	115	131	15.1406
$cccqqqqqqqqccc6	chr19:54969644-54969892(+)$1	248	138	154	13.5310
ddddqqqqqqqqdddd	chr12:69652437-69652718(+)$1	281	147	163	15.1406
ddddqqqqqqqqdddd	chr12:57919246-57919527(+)$1	281	3	19	15.1406
ddddqqqqqqqqdddd	chr1:43148448-43148821(+)$1	373	264	280	15.1406
ddddqqqqqqqqdddd	chr12:57919543-57919805(+)$1	262	169	185	15.1406
ddddqqqqqqqqdddd	chrM:10837-11055(+)$1	218	155	171	15.1406
eeeeqqqqqqqqeeee	chr7:73011546-73011833(-)$1	287	63	79	13.3891
ddddqqqqqqqqdddd	chr12:57110499-57110747(-)$1	248	185	201	15.1406
eeeeqqqqqqqqeeee	chr12:49433862-49434091(-)$1	229	206	222	13.3891
ddddqqqqqqqqdddd	chr1:156437929-156438251(-)$1	322	237	253	15.1406
ddddqqqqqqqqdddd	chr12:57112256-57112503(-)$1	247	216	232	15.1406
ddddqqqqqqqqdddd	chr12:49445512-49445776(-)$1	264	203	219	15.1406
ddddqqqqqqqqdddd	chr3:47452392-47452689(+)$1	297	160	176	15.1406
ddddqqqqqqqqdddd	chr16:2811843-2812119(+)$1	276	70	86	15.1406
eeeeqqqqqqqqeeee	chr8:144351338-144351721(+)$1	383	91	107	13.3891
!cccqqqqqqqqccc2	chr1:153923948-153924220(-)$1	272	199	215	14.0862
#cccqqqqqqqqccc6	chr12:57919416-57919663(+)$1	247	101	117	13.7076
ddddqqqqqqqqdddd	chr17:29422025-29422407(+)$1	382	47	63	15.1406
eeeeqqqqqqqqeeee	chr20:32250168-32250468(-)$1	300	256	272	13.3891
d!!aqqqqqqqqa22d	chrX:129147364-129147635(+)$1	271	50	66	12.8719
cc[aqqqqqqqqaccc	chr7:1484533-1484791(-)$1	258	184	200	13.4634
ddddqqqqqqqqdddd	chr12:57112037-57112309(-)$1	272	86	102	15.1406
:cccqqqqqqqqccce	chr1:33236537-33236765(+)$1	228	17	33	13.1299
[cccqqqqqqqqccc]	chrM:6385-6640(+)$1	255	58	74	14.1777
ccccqqqqqqqqccc]	chr7:4829642-4829961(+)$1	319	25	41	14.1025
ddddqqqqqqqqdddd	chr3:47452166-47452432(+)$1	266	182	198	15.1406
ddddqqqqqqqqdddd	chr11:66392791-66393075(+)$1	284	165	181	15.1406
iiiiqqqqqqqqiiii	chr17:17723302-17723584(-)$1	282	248	264	12.9546
ddddqqqqqqqqdddd	chr9:139728249-139728573(+)$1	324	128	144	15.1406
ddddqqqqqqqqdddd	chr22:51019873-51020144(-)$1	271	34	50	15.1406
$cccqqqqqqqqccc3	chr11:68029564-68029858(-)$1	294	140	156	13.9807
====qqqqqqqq====	chr19:2248049-2248335(+)$1	286	168	184	13.1351
ddddqqqqqqqqdddd	chrM:10855-11064(+)$1	209	137	153	15.1406
[cccqqqqqqqqccc]	chr2:242694645-242695032(+)$1	387	213	229	14.1777
[cccqqqqqqqqccc3	chr6:33166848-33167165(-)$1	317	265	281	14.2066
#cccqqqqqqqqccc6	chr8:144357226-144357578(+)$1	352	22	38	13.7076
ddddqqqqqqqqdddd	chrX:129147556-129147872(+)$1	316	121	137	15.1406
ecccqqqqqqqqccc8	chr19:36501474-36501786(-)$1	312	256	272	13.7541
#cccqqqqqqqqccc2	chr14:55529460-55529818(+)$1	358	62	78	13.9634
ddddqqqqqqqqdddd	chr17:40946789-40947216(+)$1	427	38	54	15.1406
e!!aqqqqqqqqa22e	chr5:176916795-176917059(-)$1	264	129	145	12.5113
eeeeqqqqqqqqeeee	chr8:124219598-124219920(+)$1	322	152	168	13.3891
ddddqqqqqqqqdddd	chr17:16350897-16351271(+)$1	374	22	38	15.1406

#otherMatches

#Seq PSSM
CCCCAGGUAGCAGGGA	chr1:150526324-150526575(+)$1	251	16	32	14.1025
GGUCCCGCUCAAGACC	chr3:47452260-47452592(+)$1	332	88	104	15.1406
UGGGGCCCCUUACCCA	chr8:145065475-145065819(+)$1	344	29	45	15.1406
CCCCAGGUAGCAGGGA	chr1:150526183-150526514(+)$1	331	157	173	14.1025
ugcuucagcccuagca	chr1:171526794-171527081(+)$1	287	54	70	15.1406
ACAGCUCCAUCCCUGU	chr16:30735036-30735310(+)$1	274	239	255	15.1406
CCAGAUUCUCUCCUGU	chr6:30709536-30709833(-)$1	297	87	103	14.1777
agcuacagccccagcu	chr17:7417015-7417274(+)$1	259	37	53	15.1406
UCUGCUCCUCCUCAGA	chr2:242694542-242694845(+)$1	303	21	37	15.1406
UCCCUUUCCUCUGGGG	chr16:2817903-2818189(+)$1	286	45	61	13.3891
AGGCCAAGCCAAGCCG	chrX:53263328-53263614(-)$1	286	179	195	13.8278
UUUUGUCCUCAGGAAG	chr19:15353639-15353943(-)$1	304	284	300	13.3891
UCCCUUUCCUCUGGGG	chr16:2817844-2818103(+)$1	259	104	120	13.3891
UGGCCCACGACUGCCU	chr3:47451498-47451806(+)$1	308	51	67	14.1923
GCCUCCAAUGAUAGGC	chr1:27736280-27736585(-)$1	305	38	54	15.1406
CAGCCACAGACUGCUC	chr17:65941612-65941953(+)$1	341	16	32	14.0862
AGGCCUCCCCCAGCCC	chr19:54969692-54969979(+)$1	287	90	106	13.5310
ACCGCCUACCACCGGA	chr17:80708447-80708700(+)$1	253	34	50	14.4076
CCGCCUCCCGCAGCGG	chr19:17346735-17347002(-)$1	267	115	131	15.1406
AGGCCUCCCCCAGCCC	chr19:54969644-54969892(+)$1	248	138	154	13.5310
GGCCCCCCUCCUGGCC	chr12:69652437-69652718(+)$1	281	147	163	15.1406
GAACCACCCUCAGUUU	chr12:57919246-57919527(+)$1	281	3	19	15.1406
ACGCCGUUGUUCGCGU	chr1:43148448-43148821(+)$1	373	264	280	15.1406
GCAGCCUACUCUCUGC	chr12:57919543-57919805(+)$1	262	169	185	15.1406
UGGCAAGCCAACGCCA	chrM:10837-11055(+)$1	218	155	171	15.1406
CUGCCUGCUCCUGCAG	chr7:73011546-73011833(-)$1	287	63	79	13.3891
AGUGACUCCUUCCACU	chr12:57110499-57110747(-)$1	248	185	201	15.1406
CCCGCCACCCCAUGGG	chr12:49433862-49434091(-)$1	229	206	222	13.3891
CGGUGUCCCCAAGCCG	chr1:156437929-156438251(-)$1	322	237	253	15.1406
CACACCCCCAGCUGUG	chr12:57112256-57112503(-)$1	247	216	232	15.1406
GGACUCGCCUAUGUCC	chr12:49445512-49445776(-)$1	264	203	219	15.1406
GCCCCAUCUCCAGGGC	chr3:47452392-47452689(+)$1	297	160	176	15.1406
GCUCACAUGGCCGAGC	chr16:2811843-2812119(+)$1	276	70	86	15.1406
UCCAUCUCCCCUUGGA	chr8:144351338-144351721(+)$1	383	91	107	13.3891
UGCCUCCUCCUUGGCC	chr1:153923948-153924220(-)$1	272	199	215	14.0862
CAGACCCUCCUCUCUU	chr12:57919416-57919663(+)$1	247	101	117	13.7076
GAGGcccccuccccuc	chr17:29422025-29422407(+)$1	382	47	63	15.1406
GCCUCUCCUUGCGGGC	chr20:32250168-32250468(-)$1	300	256	272	13.3891
GUUCCCCUCUCCGUCC	chrX:129147364-129147635(+)$1	271	50	66	12.8719
AGUGCCCCAGACCCUC	chr7:1484533-1484791(-)$1	258	184	200	13.4634
GGGGCAUCCACACCCC	chr12:57112037-57112309(-)$1	272	86	102	15.1406
CCCUCCCUCCCAAGGG	chr1:33236537-33236765(+)$1	228	17	33	13.1299
AACGCCCCUCUUCGUC	chrM:6385-6640(+)$1	255	58	74	14.1777
GGGCCCUCAGcagccu	chr7:4829642-4829961(+)$1	319	25	41	14.1025
GGUCCCGCUCAAGACC	chr3:47452166-47452432(+)$1	266	182	198	15.1406
CUGCCUCCUACCGCGG	chr11:66392791-66393075(+)$1	284	165	181	15.1406
UGCUGUGAUGUGAGUA	chr17:17723302-17723584(-)$1	282	248	264	12.9546
GAGCUCCCCACUGCUC	chr9:139728249-139728573(+)$1	324	128	144	15.1406
AUGUCUGCCUCCACAU	chr22:51019873-51020144(-)$1	271	34	50	15.1406
AUGCGUCCCCAAGCAC	chr11:68029564-68029858(-)$1	294	140	156	13.9807
GGUUCACCCACCAGCC	chr19:2248049-2248335(+)$1	286	168	184	13.1351
UGGCAAGCCAACGCCA	chrM:10855-11064(+)$1	209	137	153	15.1406
CCACUCUGUGCCGUGU	chr2:242694645-242695032(+)$1	387	213	229	14.1777
UGUUUUCCUUGUAACC	chr6:33166848-33167165(-)$1	317	265	281	14.2066
CAGGAACUCCUCCCUC	chr8:144357226-144357578(+)$1	352	22	38	13.7076
agcuccucccuuggcu	chrX:129147556-129147872(+)$1	316	121	137	15.1406
CCCACACCGUGCUGGA	chr19:36501474-36501786(-)$1	312	256	272	13.7541
CAGGAAUGUAUCCCUC	chr14:55529460-55529818(+)$1	358	62	78	13.9634
UGGACAGCCUUCUCCA	chr17:40946789-40947216(+)$1	427	38	54	15.1406
CCAGUCAUCUCCCGUG	chr5:176916795-176917059(-)$1	264	129	145	12.5113
GGGAGCCCCGAGUCCC	chr8:124219598-124219920(+)$1	322	152	168	13.3891
GUGCCCACUUUAGCAC	chr17:16350897-16351271(+)$1	374	22	38	15.1406

#DB
((((........))).	chr1:150526324-150526575(+)$1	1	16	32	14.1025
((((........))))	chr3:47452260-47452592(+)$1	1	88	104	15.1406
((((........))))	chr8:145065475-145065819(+)$1	1	29	45	15.1406
((((........))).	chr1:150526183-150526514(+)$1	1	157	173	14.1025
((((........))))	chr1:171526794-171527081(+)$1	1	54	70	15.1406
((((........))))	chr16:30735036-30735310(+)$1	1	239	255	15.1406
.(((........))).	chr6:30709536-30709833(-)$1	1	87	103	14.1777
((((........))))	chr17:7417015-7417274(+)$1	1	37	53	15.1406
((((........))))	chr2:242694542-242694845(+)$1	1	21	37	15.1406
((((........))))	chr16:2817903-2818189(+)$1	1	45	61	13.3891
.(((........))))	chrX:53263328-53263614(-)$1	1	179	195	13.8278
((((........))))	chr19:15353639-15353943(-)$1	1	284	300	13.3891
((((........))))	chr16:2817844-2818103(+)$1	1	104	120	13.3891
.(((........))).	chr3:47451498-47451806(+)$1	1	51	67	14.1923
((((........))))	chr1:27736280-27736585(-)$1	1	38	54	15.1406
.(((........))).	chr17:65941612-65941953(+)$1	1	16	32	14.0862
.(((........))).	chr19:54969692-54969979(+)$1	1	90	106	13.5310
.(((........))))	chr17:80708447-80708700(+)$1	1	34	50	14.4076
((((........))))	chr19:17346735-17347002(-)$1	1	115	131	15.1406
.(((........))).	chr19:54969644-54969892(+)$1	1	138	154	13.5310
((((........))))	chr12:69652437-69652718(+)$1	1	147	163	15.1406
((((........))))	chr12:57919246-57919527(+)$1	1	3	19	15.1406
((((........))))	chr1:43148448-43148821(+)$1	1	264	280	15.1406
((((........))))	chr12:57919543-57919805(+)$1	1	169	185	15.1406
((((........))))	chrM:10837-11055(+)$1	1	155	171	15.1406
((((........))))	chr7:73011546-73011833(-)$1	1	63	79	13.3891
((((........))))	chr12:57110499-57110747(-)$1	1	185	201	15.1406
((((........))))	chr12:49433862-49434091(-)$1	1	206	222	13.3891
((((........))))	chr1:156437929-156438251(-)$1	1	237	253	15.1406
((((........))))	chr12:57112256-57112503(-)$1	1	216	232	15.1406
((((........))))	chr12:49445512-49445776(-)$1	1	203	219	15.1406
((((........))))	chr3:47452392-47452689(+)$1	1	160	176	15.1406
((((........))))	chr16:2811843-2812119(+)$1	1	70	86	15.1406
((((........))))	chr8:144351338-144351721(+)$1	1	91	107	13.3891
.(((........))).	chr1:153923948-153924220(-)$1	1	199	215	14.0862
.(((........))).	chr12:57919416-57919663(+)$1	1	101	117	13.7076
((((........))))	chr17:29422025-29422407(+)$1	1	47	63	15.1406
((((........))))	chr20:32250168-32250468(-)$1	1	256	272	13.3891
(..(........)..)	chrX:129147364-129147635(+)$1	1	50	66	12.8719
((.(........))))	chr7:1484533-1484791(-)$1	1	184	200	13.4634
((((........))))	chr12:57112037-57112309(-)$1	1	86	102	15.1406
.(((........)))(	chr1:33236537-33236765(+)$1	1	17	33	13.1299
.(((........))).	chrM:6385-6640(+)$1	1	58	74	14.1777
((((........))).	chr7:4829642-4829961(+)$1	1	25	41	14.1025
((((........))))	chr3:47452166-47452432(+)$1	1	182	198	15.1406
((((........))))	chr11:66392791-66393075(+)$1	1	165	181	15.1406
((((........))))	chr17:17723302-17723584(-)$1	1	248	264	12.9546
((((........))))	chr9:139728249-139728573(+)$1	1	128	144	15.1406
((((........))))	chr22:51019873-51020144(-)$1	1	34	50	15.1406
.(((........))).	chr11:68029564-68029858(-)$1	1	140	156	13.9807
((((........))))	chr19:2248049-2248335(+)$1	1	168	184	13.1351
((((........))))	chrM:10855-11064(+)$1	1	137	153	15.1406
.(((........))).	chr2:242694645-242695032(+)$1	1	213	229	14.1777
.(((........))).	chr6:33166848-33167165(-)$1	1	265	281	14.2066
.(((........))).	chr8:144357226-144357578(+)$1	1	22	38	13.7076
((((........))))	chrX:129147556-129147872(+)$1	1	121	137	15.1406
((((........))).	chr19:36501474-36501786(-)$1	1	256	272	13.7541
.(((........))).	chr14:55529460-55529818(+)$1	1	62	78	13.9634
((((........))))	chr17:40946789-40947216(+)$1	1	38	54	15.1406
(..(........)..)	chr5:176916795-176917059(-)$1	1	129	145	12.5113
((((........))))	chr8:124219598-124219920(+)$1	1	152	168	13.3891
((((........))))	chr17:16350897-16351271(+)$1	1	22	38	15.1406

#PSSM
d : 0.48	e : 0.16	c : 0.06	[ : 0.06	! : 0.06	$ : 0.04	# : 0.04	" : 0.01	: : 0.01	i : 0.01	= : 0.01	
d : 0.46	c : 0.33	e : 0.12	! : 0.03	i : 0.01	= : 0.01	
d : 0.46	c : 0.32	e : 0.12	! : 0.03	[ : 0.01	i : 0.01	= : 0.01	
d : 0.46	c : 0.32	e : 0.12	a : 0.04	i : 0.01	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.46	c : 0.32	e : 0.12	a : 0.04	i : 0.01	= : 0.01	
d : 0.46	c : 0.33	e : 0.12	2 : 0.03	i : 0.01	= : 0.01	
d : 0.46	c : 0.33	e : 0.12	2 : 0.03	i : 0.01	= : 0.01	
d : 0.49	e : 0.16	] : 0.09	6 : 0.06	3 : 0.04	2 : 0.04	b : 0.01	c : 0.01	i : 0.01	= : 0.01	8 : 0.01	

#score	890.0823167871351
#seq	62
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF002FLD_DKC1_UTR_m1_run2.txt

#BEAR
ggg[iiiiiiiiissssssssssiiiiiiiii]ggg	chr11:93463630-93463843(-)$1	213	112	148	18.7782
eeee[bbffffffqqqqqqqqffffff]bb]eeeee	chr3:12881729-12881933(-)$1	204	70	106	17.0485
ggg[iiiiiiiiissssssssssiiiiiiiii]ggg	chr11:93463655-93463859(-)$1	204	128	164	18.7782
ggg[iiiiiiiiissssssssssiiiiiiiii]ggg	chr11:93463672-93463907(-)$1	235	176	212	18.7782
e$$$$$eeeeebbqqqqqqqqbb]eeeee333eeee	chr16:2012277-2012493(-)$1	216	75	111	16.7734
=========ddddqqqqqqqqdddd4444=======	chr11:93464123-93464327(-)$1	204	12	48	20.1015
ggg!!a"""ddddqqqqqqqqdddd333a22ggggg	chr12:56991159-56991443(-)$1	284	171	207	17.1716
e$$$$$eeeeebbqqqqqqqqbb]eeeee333eeee	chr16:2012298-2012520(-)$1	222	102	138	16.7734
ffffffgggggggqqqqqqqqggggggg]ffffff]	chr1:155648892-155649102(-)$1	210	72	108	17.2607
[============qqqqqqqq============bb2	chr11:8705732-8705937(+)$1	205	54	90	23.1931
===========[cccooooooccc]===========	chr19:5140308-5140540(+)$1	232	191	227	15.8867
============[ccclllccc333===========	chr11:75111375-75111597(+)$1	222	18	54	14.7068
=======!!ccc[apppppppa]ccc]=========	chr3:12881806-12882009(-)$1	203	11	47	14.5504
ggg[iiiiiiiiissssssssssiiiiiiiii]ggg	chr11:93463659-93463864(-)$1	205	133	169	18.7782
icccdddd[bb[aqqqqqqqqabbdddd]ccc333i	chr13:26828267-26828520(+)$1	253	146	182	14.8810
ggg[iiiiiiiiissssssssssiiiiiiiii]ggg	chr11:93463577-93463816(-)$1	239	85	121	18.7782
ccceeeeeeeeeeqqqqqqqqeeeee333eeeee22	chr11:93466565-93466777(-)$1	212	25	61	15.8575
=============apppppppa]=============	chr9:138899052-138899327(-)$1	275	110	146	16.9326
###==========qqqqqqqq==========4444=	chr16:89980762-89981026(+)$1	264	128	164	22.6468
eeee[bbffffffqqqqqqqqffffff]bb]eeeee	chr3:12881776-12881979(-)$1	203	116	152	17.0485
ffffffgggggggqqqqqqqqggggggg]ffffff]	chr1:155648863-155649078(-)$1	215	48	84	17.2607
[============qqqqqqqq============bb2	chr11:8705747-8705953(+)$1	206	39	75	23.1931
ggg[iiiiiiiiissssssssssiiiiiiiii]ggg	chr11:93463616-93463830(-)$1	214	99	135	18.7782
d$$$$$eeeeebbqqqqqqqqbb]eeeee333dddd	chr16:2012343-2012560(-)$1	217	142	178	15.8678
ccceeeeeeeeeeqqqqqqqqeeeee333eeeee22	chr11:93466546-93466765(-)$1	219	13	49	15.8575
eeee[bbffffffqqqqqqqqffffff]bb]eeeee	chr3:12881750-12881964(-)$1	214	101	137	17.0485
e$$$$$eeeeebbqqqqqqqqbb]eeeee333eeee	chr16:2012360-2012567(-)$1	207	149	185	16.7734
============[ccclllccc333===========	chr11:75111362-75111575(+)$1	213	31	67	14.7068
c!!==========ssssssssss==========22c	chr1:155648902-155649142(-)$1	240	181	217	19.1604
gg!!gggggggbbqqqqqqqqbb22ggggggg]ggg	chr11:62609112-62609348(-)$1	236	43	79	18.6013
ggg[iiiiiiiiissssssssssiiiiiiiii]ggg	chr11:93463664-93463872(-)$1	208	141	177	18.7782
###==========qqqqqqqq==========4444=	chr16:89980841-89981129(+)$1	288	49	85	22.6468
=========ddddqqqqqqqqdddd4444=======	chr11:93464127-93464334(-)$1	207	19	55	20.1015
[============qqqqqqqq============bb2	chr11:8705740-8705945(+)$1	205	46	82	23.1931
e$$$$$eeeeebbqqqqqqqqbb]eeeee333eeee	chr16:2012232-2012438(-)$1	206	20	56	16.7734
============[ccclllccc333===========	chr11:75111332-75111562(+)$1	230	61	97	14.7068
[============qqqqqqqq============bb2	chr11:8705728-8705932(+)$1	204	58	94	23.1931
ffffff[ffffffqqqqqqqqffffff333ffffff	chr16:3704377-3704637(+)$1	260	1	37	16.4294
eeee[bbffffffqqqqqqqqffffff]bb]eeeee	chr3:12881726-12881929(-)$1	203	66	102	17.0485
[============qqqqqqqq============bb2	chr11:8705720-8705925(+)$1	205	66	102	23.1931
'''==========qqqqqqqq==========88888	chr16:89981288-89981531(+)$1	243	43	79	17.7697
eeee[bbffffffqqqqqqqqffffff]bb]eeeee	chr3:12881733-12881937(-)$1	204	74	110	17.0485
ggg[iiiiiiiiissssssssssiiiiiiiii]ggg	chr11:93463649-93463853(-)$1	204	122	158	18.7782
dd[bb[gggggggqqqqqqqqggggggg]bbdddd:	chr13:26828254-26828467(+)$1	213	36	72	15.5242
[============qqqqqqqq============bb2	chr11:8705714-8705920(+)$1	206	72	108	23.1931
=============qqqqqqqq===============	chr19:47774830-47775201(+)$1	371	137	173	23.7208
=========ddddqqqqqqqqdddd4444=======	chr11:93464113-93464323(-)$1	210	8	44	20.1015
[============qqqqqqqq============bb2	chr11:8705725-8705928(+)$1	203	61	97	23.1931
[============qqqqqqqq============bb2	chr11:8705697-8705914(+)$1	217	89	125	23.1931
=========ddddqqqqqqqqdddd4444=======	chr11:93464161-93464366(-)$1	205	51	87	20.1015
=============rrrrrrrrr=============C	chr16:89980263-89980510(+)$1	247	101	137	17.9842
eeee[bbffffffqqqqqqqqffffff]bb]eeeee	chr3:12881737-12881950(-)$1	213	87	123	17.0485
[============qqqqqqqq============bb2	chr11:8705738-8705940(+)$1	202	48	84	23.1931
eeee[bbffffffqqqqqqqqffffff]bb]eeeee	chr3:12881708-12881926(-)$1	218	63	99	17.0485
ggg[iiiiiiiiissssssssssiiiiiiiii]ggg	chr11:93463646-93463849(-)$1	203	118	154	18.7782
eeee[bbffffffqqqqqqqqffffff]bb]eeeee	chr3:12881765-12881974(-)$1	209	111	147	17.0485
ggg[iiiiiiiiissssssssssiiiiiiiii]ggg	chr11:93463643-93463846(-)$1	203	115	151	18.7782
e$$$$$eeeeebbqqqqqqqqbb]eeeee333eeee	chr16:2012293-2012498(-)$1	205	80	116	16.7734
ffffff[ffffffqqqqqqqqffffff333ffffff	chr16:3704229-3704577(+)$1	348	149	185	16.4294

#otherMatches

#Seq PSSM
AAGCCAUAGCACUCCUAAUGUUUGGUGCUAUGUUUU	chr11:93463630-93463843(-)$1	213	112	148	18.7782
UCCAUUCCCAGCUUGCUCCGUAGCUGGCGAUUGGAA	chr3:12881729-12881933(-)$1	204	70	106	17.0485
AAGCCAUAGCACUCCUAAUGUUUGGUGCUAUGUUUU	chr11:93463655-93463859(-)$1	204	128	164	18.7782
AAGCCAUAGCACUCCUAAUGUUUGGUGCUAUGUUUU	chr11:93463672-93463907(-)$1	235	176	212	18.7782
UUUUCAGGGAGGCAGAGAAAGGCUCUCCUAAUGCAC	chr16:2012277-2012493(-)$1	216	75	111	16.7734
GCAAGUAAUGGUUUUUAUCUUAACUAUAAGUUAUUU	chr11:93464123-93464327(-)$1	204	12	48	20.1015
CCAUUGUUUAAAACCAUCACUUUUUUGUCUUUGGGA	chr12:56991159-56991443(-)$1	284	171	207	17.1716
UUUUCAGGGAGGCAGAGAAAGGCUCUCCUAAUGCAC	chr16:2012298-2012520(-)$1	222	102	138	16.7734
GGGCAGUGCAGCUGUAGGCCAAGCUGUAUCUGUUUG	chr1:155648892-155649102(-)$1	210	72	108	17.2607
UCACGCUUGGGUAUCGGCUAUUGCCUGAGUGUGCUA	chr11:8705732-8705937(+)$1	205	54	90	23.1931
acuuugggaggccgaggcgggucgaucuccugaggu	chr19:5140308-5140540(+)$1	232	191	227	15.8867
UAGAGCAGUUUCUUGUUUUGCAUGUGGAACUGUUUU	chr11:75111375-75111597(+)$1	222	18	54	14.7068
UGCUCAGCUGUUGGCAUUCUUUGGGCUCUGAGUGGG	chr3:12881806-12882009(-)$1	203	11	47	14.5504
AAGCCAUAGCACUCCUAAUGUUUGGUGCUAUGUUUU	chr11:93463659-93463864(-)$1	205	133	169	18.7782
CCCGCCGCAGCAGGAGCAGAACGCGCGGCCGGAGAG	chr13:26828267-26828520(+)$1	253	146	182	14.8810
AAGCCAUAGCACUCCUAAUGUUUGGUGCUAUGUUUU	chr11:93463577-93463816(-)$1	239	85	121	18.7782
UCCCGAUGGGGCUUUUCCUGUAGCCUGCACAUCGUU	chr11:93466565-93466777(-)$1	212	25	61	15.8575
ugcacgcgugugucugugugugugCACGCGCGUGCA	chr9:138899052-138899327(-)$1	275	110	146	16.9326
ugugugugcgccugugugugggggugcacauuugug	chr16:89980762-89981026(+)$1	264	128	164	22.6468
UCCAUUCCCAGCUUGCUCCGUAGCUGGCGAUUGGAA	chr3:12881776-12881979(-)$1	203	116	152	17.0485
GGGCAGUGCAGCUGUAGGCCAAGCUGUAUCUGUUUG	chr1:155648863-155649078(-)$1	215	48	84	17.2607
UCACGCUUGGGUAUCGGCUAUUGCCUGAGUGUGCUA	chr11:8705747-8705953(+)$1	206	39	75	23.1931
AAGCCAUAGCACUCCUAAUGUUUGGUGCUAUGUUUU	chr11:93463616-93463830(-)$1	214	99	135	18.7782
UUUUCAGGGAGGCAGAGAAAGGCUCUCCUAAUGCAC	chr16:2012343-2012560(-)$1	217	142	178	15.8678
UCCCGAUGGGGCUUUUCCUGUAGCCUGCACAUCGUU	chr11:93466546-93466765(-)$1	219	13	49	15.8575
UCCAUUCCCAGCUUGCUCCGUAGCUGGCGAUUGGAA	chr3:12881750-12881964(-)$1	214	101	137	17.0485
UUUUCAGGGAGGCAGAGAAAGGCUCUCCUAAUGCAC	chr16:2012360-2012567(-)$1	207	149	185	16.7734
UAGAGCAGUUUCUUGUUUUGCAUGUGGAACUGUUUU	chr11:75111362-75111575(+)$1	213	31	67	14.7068
UCCACUUCUCCGGGUGAGUGGUGCUGGAGAGGUAUG	chr1:155648902-155649142(-)$1	240	181	217	19.1604
CGCCGAGGCGACCGAAGUAAAGGUaucgcuucucgg	chr11:62609112-62609348(-)$1	236	43	79	18.6013
AAGCCAUAGCACUCCUAAUGUUUGGUGCUAUGUUUU	chr11:93463664-93463872(-)$1	208	141	177	18.7782
ugugugugcgccugugugugggggugcacauuugug	chr16:89980841-89981129(+)$1	288	49	85	22.6468
GCAAGUAAUGGUUUUUAUCUUAACUAUAAGUUAUUU	chr11:93464127-93464334(-)$1	207	19	55	20.1015
UCACGCUUGGGUAUCGGCUAUUGCCUGAGUGUGCUA	chr11:8705740-8705945(+)$1	205	46	82	23.1931
UUUUCAGGGAGGCAGAGAAAGGCUCUCCUAAUGCAC	chr16:2012232-2012438(-)$1	206	20	56	16.7734
UAGAGCAGUUUCUUGUUUUGCAUGUGGAACUGUUUU	chr11:75111332-75111562(+)$1	230	61	97	14.7068
UCACGCUUGGGUAUCGGCUAUUGCCUGAGUGUGCUA	chr11:8705728-8705932(+)$1	204	58	94	23.1931
GCCUGCACCUGAUGGCGAUGAAUCAGGAAGGCAGGC	chr16:3704377-3704637(+)$1	260	1	37	16.4294
UCCAUUCCCAGCUUGCUCCGUAGCUGGCGAUUGGAA	chr3:12881726-12881929(-)$1	203	66	102	17.0485
UCACGCUUGGGUAUCGGCUAUUGCCUGAGUGUGCUA	chr11:8705720-8705925(+)$1	205	66	102	23.1931
ugugggugcacauuugugugugugugugccugugug	chr16:89981288-89981531(+)$1	243	43	79	17.7697
UCCAUUCCCAGCUUGCUCCGUAGCUGGCGAUUGGAA	chr3:12881733-12881937(-)$1	204	74	110	17.0485
AAGCCAUAGCACUCCUAAUGUUUGGUGCUAUGUUUU	chr11:93463649-93463853(-)$1	204	122	158	18.7782
UCUGCCCUUCUGUUugaguguaugggagagugagug	chr13:26828254-26828467(+)$1	213	36	72	15.5242
UCACGCUUGGGUAUCGGCUAUUGCCUGAGUGUGCUA	chr11:8705714-8705920(+)$1	206	72	108	23.1931
gugugugugugugugugugugugcgcgcgcgcgcgc	chr19:47774830-47775201(+)$1	371	137	173	23.7208
GCAAGUAAUGGUUUUUAUCUUAACUAUAAGUUAUUU	chr11:93464113-93464323(-)$1	210	8	44	20.1015
UCACGCUUGGGUAUCGGCUAUUGCCUGAGUGUGCUA	chr11:8705725-8705928(+)$1	203	61	97	23.1931
UCACGCUUGGGUAUCGGCUAUUGCCUGAGUGUGCUA	chr11:8705697-8705914(+)$1	217	89	125	23.1931
GCAAGUAAUGGUUUUUAUCUUAACUAUAAGUUAUUU	chr11:93464161-93464366(-)$1	205	51	87	20.1015
gugugcgcauguggugugggugcacgugugugcacg	chr16:89980263-89980510(+)$1	247	101	137	17.9842
UCCAUUCCCAGCUUGCUCCGUAGCUGGCGAUUGGAA	chr3:12881737-12881950(-)$1	213	87	123	17.0485
UCACGCUUGGGUAUCGGCUAUUGCCUGAGUGUGCUA	chr11:8705738-8705940(+)$1	202	48	84	23.1931
UCCAUUCCCAGCUUGCUCCGUAGCUGGCGAUUGGAA	chr3:12881708-12881926(-)$1	218	63	99	17.0485
AAGCCAUAGCACUCCUAAUGUUUGGUGCUAUGUUUU	chr11:93463646-93463849(-)$1	203	118	154	18.7782
UCCAUUCCCAGCUUGCUCCGUAGCUGGCGAUUGGAA	chr3:12881765-12881974(-)$1	209	111	147	17.0485
AAGCCAUAGCACUCCUAAUGUUUGGUGCUAUGUUUU	chr11:93463643-93463846(-)$1	203	115	151	18.7782
UUUUCAGGGAGGCAGAGAAAGGCUCUCCUAAUGCAC	chr16:2012293-2012498(-)$1	205	80	116	16.7734
GCCUGCACCUGAUGGCGAUGAAUCAGGAAGGCAGGC	chr16:3704229-3704577(+)$1	348	149	185	16.4294

#DB
(((.(((((((((..........))))))))).)))	chr11:93463630-93463843(-)$1	1	112	148	18.7782
((((.((((((((........)))))).)).)))))	chr3:12881729-12881933(-)$1	1	70	106	17.0485
(((.(((((((((..........))))))))).)))	chr11:93463655-93463859(-)$1	1	128	164	18.7782
(((.(((((((((..........))))))))).)))	chr11:93463672-93463907(-)$1	1	176	212	18.7782
(.....(((((((........)).)))))...))))	chr16:2012277-2012493(-)$1	1	75	111	16.7734
(((((((((((((........))))....)))))))	chr11:93464123-93464327(-)$1	1	12	48	20.1015
(((..(...((((........))))...)..)))))	chr12:56991159-56991443(-)$1	1	171	207	17.1716
(.....(((((((........)).)))))...))))	chr16:2012298-2012520(-)$1	1	102	138	16.7734
(((((((((((((........))))))).)))))).	chr1:155648892-155649102(-)$1	1	72	108	17.2607
.((((((((((((........)))))))))))))).	chr11:8705732-8705937(+)$1	1	54	90	23.1931
(((((((((((.(((......))).)))))))))))	chr19:5140308-5140540(+)$1	1	191	227	15.8867
((((((((((((.(((...)))...)))))))))))	chr11:75111375-75111597(+)$1	1	18	54	14.7068
(((((((..(((.(.......).))).)))))))))	chr3:12881806-12882009(-)$1	1	11	47	14.5504
(((.(((((((((..........))))))))).)))	chr11:93463659-93463864(-)$1	1	133	169	18.7782
((((((((.((.(........))))))).)))...)	chr13:26828267-26828520(+)$1	1	146	182	14.8810
(((.(((((((((..........))))))))).)))	chr11:93463577-93463816(-)$1	1	85	121	18.7782
(((((((((((((........)))))...)))))..	chr11:93466565-93466777(-)$1	1	25	61	15.8575
((((((((((((((.......).)))))))))))))	chr9:138899052-138899327(-)$1	1	110	146	16.9326
...((((((((((........))))))))))....)	chr16:89980762-89981026(+)$1	1	128	164	22.6468
((((.((((((((........)))))).)).)))))	chr3:12881776-12881979(-)$1	1	116	152	17.0485
(((((((((((((........))))))).)))))).	chr1:155648863-155649078(-)$1	1	48	84	17.2607
.((((((((((((........)))))))))))))).	chr11:8705747-8705953(+)$1	1	39	75	23.1931
(((.(((((((((..........))))))))).)))	chr11:93463616-93463830(-)$1	1	99	135	18.7782
(.....(((((((........)).)))))...))))	chr16:2012343-2012560(-)$1	1	142	178	15.8678
(((((((((((((........)))))...)))))..	chr11:93466546-93466765(-)$1	1	13	49	15.8575
((((.((((((((........)))))).)).)))))	chr3:12881750-12881964(-)$1	1	101	137	17.0485
(.....(((((((........)).)))))...))))	chr16:2012360-2012567(-)$1	1	149	185	16.7734
((((((((((((.(((...)))...)))))))))))	chr11:75111362-75111575(+)$1	1	31	67	14.7068
(..((((((((((..........))))))))))..)	chr1:155648902-155649142(-)$1	1	181	217	19.1604
((..(((((((((........))..))))))).)))	chr11:62609112-62609348(-)$1	1	43	79	18.6013
(((.(((((((((..........))))))))).)))	chr11:93463664-93463872(-)$1	1	141	177	18.7782
...((((((((((........))))))))))....)	chr16:89980841-89981129(+)$1	1	49	85	22.6468
(((((((((((((........))))....)))))))	chr11:93464127-93464334(-)$1	1	19	55	20.1015
.((((((((((((........)))))))))))))).	chr11:8705740-8705945(+)$1	1	46	82	23.1931
(.....(((((((........)).)))))...))))	chr16:2012232-2012438(-)$1	1	20	56	16.7734
((((((((((((.(((...)))...)))))))))))	chr11:75111332-75111562(+)$1	1	61	97	14.7068
.((((((((((((........)))))))))))))).	chr11:8705728-8705932(+)$1	1	58	94	23.1931
((((((.((((((........))))))...))))))	chr16:3704377-3704637(+)$1	1	1	37	16.4294
((((.((((((((........)))))).)).)))))	chr3:12881726-12881929(-)$1	1	66	102	17.0485
.((((((((((((........)))))))))))))).	chr11:8705720-8705925(+)$1	1	66	102	23.1931
...((((((((((........)))))))))).....	chr16:89981288-89981531(+)$1	1	43	79	17.7697
((((.((((((((........)))))).)).)))))	chr3:12881733-12881937(-)$1	1	74	110	17.0485
(((.(((((((((..........))))))))).)))	chr11:93463649-93463853(-)$1	1	122	158	18.7782
((.((.(((((((........))))))).)))))).	chr13:26828254-26828467(+)$1	1	36	72	15.5242
.((((((((((((........)))))))))))))).	chr11:8705714-8705920(+)$1	1	72	108	23.1931
(((((((((((((........)))))))))))))))	chr19:47774830-47775201(+)$1	1	137	173	23.7208
(((((((((((((........))))....)))))))	chr11:93464113-93464323(-)$1	1	8	44	20.1015
.((((((((((((........)))))))))))))).	chr11:8705725-8705928(+)$1	1	61	97	23.1931
.((((((((((((........)))))))))))))).	chr11:8705697-8705914(+)$1	1	89	125	23.1931
(((((((((((((........))))....)))))))	chr11:93464161-93464366(-)$1	1	51	87	20.1015
(((((((((((((.........))))))))))))))	chr16:89980263-89980510(+)$1	1	101	137	17.9842
((((.((((((((........)))))).)).)))))	chr3:12881737-12881950(-)$1	1	87	123	17.0485
.((((((((((((........)))))))))))))).	chr11:8705738-8705940(+)$1	1	48	84	23.1931
((((.((((((((........)))))).)).)))))	chr3:12881708-12881926(-)$1	1	63	99	17.0485
(((.(((((((((..........))))))))).)))	chr11:93463646-93463849(-)$1	1	118	154	18.7782
((((.((((((((........)))))).)).)))))	chr3:12881765-12881974(-)$1	1	111	147	17.0485
(((.(((((((((..........))))))))).)))	chr11:93463643-93463846(-)$1	1	115	151	18.7782
(.....(((((((........)).)))))...))))	chr16:2012293-2012498(-)$1	1	80	116	16.7734
((((((.((((((........))))))...))))))	chr16:3704229-3704577(+)$1	1	149	185	16.4294

#PSSM
e : 0.22	g : 0.20	= : 0.20	[ : 0.15	f : 0.06	c : 0.05	# : 0.03	d : 0.03	i : 0.01	' : 0.01	
= : 0.35	g : 0.20	e : 0.13	$ : 0.10	f : 0.06	c : 0.05	# : 0.03	! : 0.01	' : 0.01	d : 0.01	
= : 0.35	g : 0.18	e : 0.13	$ : 0.10	f : 0.06	c : 0.05	# : 0.03	! : 0.03	' : 0.01	[ : 0.01	
= : 0.42	[ : 0.16	e : 0.16	$ : 0.10	f : 0.06	! : 0.03	c : 0.01	b : 0.01	
= : 0.42	i : 0.16	[ : 0.13	$ : 0.10	f : 0.06	e : 0.03	! : 0.01	d : 0.01	g : 0.01	b : 0.01	
= : 0.42	i : 0.16	b : 0.13	$ : 0.10	f : 0.06	e : 0.03	a : 0.01	d : 0.01	g : 0.01	[ : 0.01	
= : 0.42	i : 0.16	b : 0.13	e : 0.13	g : 0.06	[ : 0.03	" : 0.01	d : 0.01	
= : 0.40	i : 0.16	f : 0.16	e : 0.13	g : 0.06	" : 0.01	! : 0.01	d : 0.01	
= : 0.40	i : 0.16	f : 0.16	e : 0.13	g : 0.06	" : 0.01	! : 0.01	[ : 0.01	
= : 0.33	i : 0.16	f : 0.16	e : 0.13	d : 0.08	g : 0.06	c : 0.01	b : 0.01	
= : 0.33	i : 0.16	f : 0.16	e : 0.13	d : 0.08	g : 0.06	c : 0.01	b : 0.01	
= : 0.32	i : 0.16	f : 0.16	b : 0.11	d : 0.08	g : 0.05	[ : 0.03	e : 0.03	c : 0.01	
= : 0.27	i : 0.16	f : 0.16	b : 0.11	d : 0.08	[ : 0.06	g : 0.05	e : 0.03	c : 0.01	a : 0.01	
q : 0.69	s : 0.18	c : 0.06	a : 0.03	r : 0.01	
q : 0.69	s : 0.18	c : 0.06	p : 0.03	r : 0.01	
q : 0.69	s : 0.18	c : 0.05	p : 0.03	o : 0.01	r : 0.01	
q : 0.69	s : 0.18	l : 0.05	p : 0.03	o : 0.01	r : 0.01	
q : 0.69	s : 0.18	l : 0.05	p : 0.03	o : 0.01	r : 0.01	
q : 0.69	s : 0.18	l : 0.05	p : 0.03	o : 0.01	r : 0.01	
q : 0.69	s : 0.18	c : 0.05	p : 0.03	o : 0.01	r : 0.01	
q : 0.69	s : 0.18	c : 0.05	p : 0.03	o : 0.01	r : 0.01	
= : 0.22	s : 0.18	f : 0.16	b : 0.11	d : 0.08	c : 0.06	g : 0.05	a : 0.05	e : 0.03	r : 0.01	
= : 0.23	s : 0.18	f : 0.16	b : 0.13	d : 0.08	g : 0.05	3 : 0.05	] : 0.03	e : 0.03	c : 0.01	
= : 0.27	i : 0.16	f : 0.16	] : 0.10	d : 0.08	g : 0.05	3 : 0.05	c : 0.03	e : 0.03	b : 0.01	2 : 0.01	
= : 0.27	i : 0.16	f : 0.16	e : 0.13	d : 0.10	g : 0.05	3 : 0.05	] : 0.01	c : 0.01	2 : 0.01	
= : 0.33	i : 0.16	f : 0.16	e : 0.13	4 : 0.06	g : 0.06	3 : 0.01	c : 0.01	d : 0.01	
= : 0.33	i : 0.16	f : 0.16	e : 0.10	4 : 0.06	g : 0.06	3 : 0.05	] : 0.01	d : 0.01	
= : 0.35	i : 0.16	] : 0.13	e : 0.10	3 : 0.08	4 : 0.06	g : 0.06	d : 0.01	
= : 0.35	i : 0.16	b : 0.13	e : 0.10	4 : 0.06	] : 0.06	3 : 0.06	a : 0.01	g : 0.01	
= : 0.42	i : 0.16	b : 0.15	3 : 0.13	f : 0.03	e : 0.03	2 : 0.01	c : 0.01	g : 0.01	
= : 0.42	i : 0.16	] : 0.13	3 : 0.10	f : 0.06	e : 0.03	2 : 0.01	c : 0.01	g : 0.01	b : 0.01	
= : 0.37	i : 0.16	e : 0.16	3 : 0.10	f : 0.06	g : 0.03	4 : 0.03	c : 0.01	8 : 0.01	d : 0.01	
= : 0.37	e : 0.25	] : 0.18	f : 0.06	4 : 0.03	d : 0.03	g : 0.01	3 : 0.01	8 : 0.01	
e : 0.25	g : 0.20	= : 0.20	b : 0.15	f : 0.06	4 : 0.03	d : 0.03	3 : 0.01	2 : 0.01	8 : 0.01	
e : 0.22	g : 0.20	= : 0.20	b : 0.15	f : 0.06	2 : 0.05	4 : 0.03	d : 0.03	3 : 0.01	8 : 0.01	
e : 0.22	= : 0.22	g : 0.20	2 : 0.18	] : 0.03	f : 0.03	i : 0.01	d : 0.01	c : 0.01	8 : 0.01	: : 0.01	C : 0.01	

#score	1093.7436676808982
#seq	59
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_transcript_m3_run2.txt

#BEAR
dd!!bbqqqqqqqqbb]ddd	chr5:149779320-149779648(+)$1	328	139	159	14.1994
d"""bbqqqqqqqqbb]ddd	chr14:102551033-102551242(-)$1	209	6	26	14.2970
cc!!bbqqqqqqqqbb22cc	chrX:53436321-53436534(-)$1	213	68	88	14.1909
hhddddqqqqqqqqdddd]h	chr19:18685653-18685883(+)$1	230	163	183	14.9622
ddddddqqqqqqqqdddd]d	chr4:71697986-71698256(-)$1	270	150	170	15.2315
gg!!bbqqqqqqqqbb]ggg	chr16:12009607-12009906(-)$1	299	195	215	14.3931
!!ddddqqqqqqqqdddd22	chr16:85698521-85698784(+)$1	263	4	24	15.7379
c"""bbqqqqqqqqbb4444	chr12:80187540-80187809(-)$1	269	108	128	14.6091
=[ddddqqqqqqqqdddd22	chr11:61081676-61082024(-)$1	348	183	203	15.5792
cc[cccqqqqqqqqccc]cc	chr1:93300315-93300566(+)$1	251	27	47	14.6032
[eeeeeqqqqqqqqeeeee3	chr3:185135779-185136042(-)$1	263	32	52	14.7424
e[a!!aqqqqqqqqa22a]e	chr4:1746576-1746837(+)$1	261	175	195	14.3441
ceeeeeqqqqqqqqeeeee]	chr5:140032518-140032754(+)$1	236	173	193	14.5180
ddddddqqqqqqqqdddd66	chr12:57928742-57929038(-)$1	296	148	168	14.2211
!eeeeeqqqqqqqqeeeee]	chr1:2160326-2160625(+)$1	299	65	85	14.6825
f[ddddqqqqqqqqdddd]f	chr21:37747765-37748056(+)$1	291	74	94	15.4329
ggggggqqqqqqqqgggggg	chr15:64448001-64448234(-)$1	233	53	73	13.9979
iiiiiiqqqqqqqqiiiiii	chr20:31424444-31424708(+)$1	264	42	62	14.0928
gggg[aqqqqqqqqa]gggg	chrM:3059-3270(+)$1	211	121	141	13.9927
dd[cccqqqqqqqqcccddd	chr5:37392014-37392299(+)$1	285	238	258	14.4021
[addddqqqqqqqqdddd99	chr17:26945743-26946014(-)$1	271	156	176	14.1118
###cccqqqqqqqqccc]ee	chr19:4493622-4493907(+)$1	285	60	80	14.8691
#eeeeeqqqqqqqqeeeee3	chr11:812530-812733(+)$1	203	99	119	14.7235
e[ddddqqqqqqqqdddd]e	chr8:11687677-11687967(+)$1	290	237	257	15.6268
ggggggqqqqqqqqgggggg	chr13:107220049-107220334(-)$1	285	169	189	13.9979
c[ddddqqqqqqqqddddcc	chr12:6690362-6690583(-)$1	221	91	111	15.4736
Ceeeeeqqqqqqqqeeeeee	chr20:34637459-34637720(-)$1	261	40	60	13.3535
bb[cccqqqqqqqqcccbb2	chr19:6381079-6381306(-)$1	227	156	176	13.1645
ffa[bbqqqqqqqqbb]a]f	chr1:47745981-47746243(-)$1	262	145	165	13.8868
ceeeeeqqqqqqqqeeeee3	chr17:75398531-75398863(+)$1	332	25	45	14.6358
eeea[aqqqqqqqqa]a]ee	chr17:7788164-7788485(+)$1	321	256	276	13.9960
""ddddqqqqqqqqdddd22	chr1:27108014-27108256(+)$1	242	148	168	15.6528
""ddddqqqqqqqqddddee	chr5:32125485-32125751(-)$1	266	195	215	15.6469
"""cccqqqqqqqqccceee	chr9:136905084-136905316(-)$1	232	106	126	15.0162
c[ddddqqqqqqqqdddd]c	chr12:76444232-76444451(-)$1	219	2	22	15.7802
!!ddddqqqqqqqqdddd]c	chr2:47388821-47389099(-)$1	278	57	77	15.9572
c!!cccqqqqqqqqccc22c	chr8:117859811-117860031(-)$1	220	184	204	14.9772
eeddddqqqqqqqqdddd44	chr12:53345168-53345511(+)$1	343	147	167	15.3468
""ddddqqqqqqqqdddd]g	chr1:35656404-35656648(-)$1	244	209	229	15.8656
cc!!bbqqqqqqqqbb22cc	chr9:36198971-36199193(+)$1	222	112	132	14.1909
ee!!bbqqqqqqqqbb22ee	chr8:17871372-17871643(+)$1	271	32	52	14.1795
eeeeeeqqqqqqqqeeeee:	chrX:53421684-53421906(-)$1	222	199	219	13.4306
ccc[bbqqqqqqqqbb22cc	chrX:153672401-153672652(+)$1	251	178	198	13.8906
cc!!bbqqqqqqqqbb22cc	chr15:41762354-41762645(+)$1	291	84	104	14.1909
[eeeeeqqqqqqqqeeeee2	chr3:160253212-160253453(-)$1	241	60	80	14.5511
ggddddqqqqqqqqdddd]g	chr17:1268050-1268283(-)$1	233	173	193	15.5050
!!ddddqqqqqqqqdddd22	chr1:8930418-8930669(-)$1	251	12	32	15.7379
""ddddqqqqqqqqdddd33	chr6:44218738-44218953(+)$1	215	19	39	16.0174
ccccccqqqqqqqqccc22c	chr12:57106471-57106688(-)$1	217	170	190	14.4389
ggggggqqqqqqqqgggggg	chr20:32681412-32681637(-)$1	225	165	185	13.9979
$eeeeeqqqqqqqqeeeeee	chr5:891278-891505(-)$1	227	179	199	14.3441
eee!!aqqqqqqqqa22eee	chr1:70716191-70716465(+)$1	274	6	26	14.0350
dd[cccqqqqqqqqccc]dd	chr19:10227396-10227707(-)$1	311	36	56	14.3117
e[ddddqqqqqqqqddddee	chr15:72766586-72766948(+)$1	362	165	185	15.4342
cc[cccqqqqqqqqccc]cc	chr11:61914190-61914472(+)$1	282	68	88	14.6032
[eeeeeqqqqqqqqeeeeeb	chr19:19120613-19120917(-)$1	304	40	60	14.2468
""ddddqqqqqqqqddddee	chr16:85840262-85840522(+)$1	260	229	249	15.6469
#eeeeeqqqqqqqqeeeeei	chr5:176916475-176916729(-)$1	254	46	66	14.5466
""ddddqqqqqqqqdddd]d	chr12:124104505-124104800(+)$1	295	38	58	15.8037
$$ddddqqqqqqqqdddd33	chr2:198353624-198353920(-)$1	296	268	288	15.5184
d[a[bbqqqqqqqqbb]a]d	chr19:6387368-6387672(-)$1	304	123	143	14.4625
d[ddddqqqqqqqqdddd]d	chr8:95541209-95541433(-)$1	224	153	173	15.6062
dd[cccqqqqqqqqccc]dd	chr1:26227444-26227679(-)$1	235	85	105	14.3117
hh!!bbqqqqqqqqbb333h	chr3:14200037-14200334(-)$1	297	44	64	14.2104
d[a[bbqqqqqqqqbbaddd	chrX:152953790-152954059(+)$1	269	42	62	14.2366

#otherMatches

#Seq PSSM
UCCCUCGCUCCACAGAAGAA	chr5:149779320-149779648(+)$1	328	139	159	14.1994
AAACCUGAAAUUGAAGAUGU	chr14:102551033-102551242(-)$1	209	6	26	14.2970
CAGCCCCUGAUGAUGGAAUG	chrX:53436321-53436534(-)$1	213	68	88	14.1909
GCUGCCGGAGUCGGGGUAUG	chr19:18685653-18685883(+)$1	230	163	183	14.9622
GCCUGUGGUAAAUGAUGGUG	chr4:71697986-71698256(-)$1	270	150	170	15.2315
GGAUCUUUGUCGCUAGCUCC	chr16:12009607-12009906(-)$1	299	195	215	14.3931
UUGCCUGCCCCUCAAGGCUC	chr16:85698521-85698784(+)$1	263	4	24	15.7379
AAAAUGAACAAGAACAACAA	chr12:80187540-80187809(-)$1	269	108	128	14.6091
GUGGCUGUAGGCAGGGCCCU	chr11:61081676-61082024(-)$1	348	183	203	15.5792
AUGCCCGUAUAGAGGGGGAU	chr1:93300315-93300566(+)$1	251	27	47	14.6032
CUCAGCGAAUGAGAGCUGGC	chr3:185135779-185136042(-)$1	263	32	52	14.7424
CCGCUGUCCCCGCCCCCCUG	chr4:1746576-1746837(+)$1	261	175	195	14.3441
ACAGCUAACUAUAGGGCUGU	chr5:140032518-140032754(+)$1	236	173	193	14.5180
GCGCCUACUGCAUGAGGUCC	chr12:57928742-57929038(-)$1	296	148	168	14.2211
ccggUGCCCGCAGCCACCGA	chr1:2160326-2160625(+)$1	299	65	85	14.6825
UUUGUAAUUAAGCCUGCACA	chr21:37747765-37748056(+)$1	291	74	94	15.4329
CCCUGUAGUCCGCCACAGGG	chr15:64448001-64448234(-)$1	233	53	73	13.9979
UGAAUUCGUUCAGUGGUUCA	chr20:31424444-31424708(+)$1	264	42	62	14.0928
AUAUCAUCUCAACUUAGUAU	chrM:3059-3270(+)$1	211	121	141	13.9927
ACUAUCAGUUUCUAGGUGUU	chr5:37392014-37392299(+)$1	285	238	258	14.4021
GACAGCUGGGAAUUGCUGAA	chr17:26945743-26946014(-)$1	271	156	176	14.1118
UCCCUGCUUCUCCCCAGAAG	chr19:4493622-4493907(+)$1	285	60	80	14.8691
GCAGGUAAGUGGUGGCCUGG	chr11:812530-812733(+)$1	203	99	119	14.7235
UGUGCUAUUCCACAGGUAGG	chr8:11687677-11687967(+)$1	290	237	257	15.6268
GAGCGCGUGCGGAAGCGUUC	chr13:107220049-107220334(-)$1	285	169	189	13.9979
GAGGUUAAAUCUACAGCCCC	chr12:6690362-6690583(-)$1	221	91	111	15.4736
CCUGAUAUGUUAAAAUUAGA	chr20:34637459-34637720(-)$1	261	40	60	13.3535
UCAGCCCUCUUCAUGGCGGU	chr19:6381079-6381306(-)$1	227	156	176	13.1645
AGCAAUAUUGAACCAUCGCC	chr1:47745981-47746243(-)$1	262	145	165	13.8868
AUGGAGCCCCCUGCCUCCAA	chr17:75398531-75398863(+)$1	332	25	45	14.6358
CCCCCCCCAAGCCCGAGUGG	chr17:7788164-7788485(+)$1	321	256	276	13.9960
CAGCUACCCCUUUAUAGUAU	chr1:27108014-27108256(+)$1	242	148	168	15.6528
CAAUCAUGGUUAUUUGAUGG	chr5:32125485-32125751(-)$1	266	195	215	15.6469
CUCAGCAGAAGAAGGCUCCU	chr9:136905084-136905316(-)$1	232	106	126	15.0162
UUUCCUUUAAAAAUAGGAUG	chr12:76444232-76444451(-)$1	219	2	22	15.7802
CAAGUCUGUAAUUUGACUCA	chr2:47388821-47389099(-)$1	278	57	77	15.9572
GUUCUACAGCUUCUUGGUUC	chr8:117859811-117860031(-)$1	220	184	204	14.9772
GUAGAUGCCCCCAAAUCUCA	chr12:53345168-53345511(+)$1	343	147	167	15.3468
GCCAAUUUGGUCCUAUUGAA	chr1:35656404-35656648(-)$1	244	209	229	15.8656
GAAGCCCUUGGUAAGGAAUC	chr9:36198971-36199193(+)$1	222	112	132	14.1909
UAGUAAUCAUCUCUUUUAUA	chr8:17871372-17871643(+)$1	271	32	52	14.1795
GGAUCUGAAGGUGAGGAUCA	chrX:53421684-53421906(-)$1	222	199	219	13.4306
gccAUGGCUCAAUACAAGGG	chrX:153672401-153672652(+)$1	251	178	198	13.8906
UCUUCUUUCUUUCUAGCUGA	chr15:41762354-41762645(+)$1	291	84	104	14.1909
CGUGAUAUAUUUACAUCaua	chr3:160253212-160253453(-)$1	241	60	80	14.5511
GUUACCUGUaggacgguaca	chr17:1268050-1268283(-)$1	233	173	193	15.5050
UCGGCCUCAACAGUGGUUCU	chr1:8930418-8930669(-)$1	251	12	32	15.7379
GUACCACUUAUUUUUGGUUU	chr6:44218738-44218953(+)$1	215	19	39	16.0174
AGUGACUUUAUUUUGUCUUG	chr12:57106471-57106688(-)$1	217	170	190	14.4389
CUGUAUACAUUUACAUACAG	chr20:32681412-32681637(-)$1	225	165	185	13.9979
AGGUGGAGGUGGAGCCGCCC	chr5:891278-891505(-)$1	227	179	199	14.3441
AAUUGAUUUAUUUUUAUAUU	chr1:70716191-70716465(+)$1	274	6	26	14.0350
UGCCAGGACCUGAACUGCCA	chr19:10227396-10227707(-)$1	311	36	56	14.3117
GCGGGCAGCAAGCGGccccc	chr15:72766586-72766948(+)$1	362	165	185	15.4342
cggcgcgagcaggagcggcg	chr11:61914190-61914472(+)$1	282	68	88	14.6032
AGGCUGAAACACCACGGCCG	chr19:19120613-19120917(-)$1	304	40	60	14.2468
CUGCGCCUGCACCUGCGCCU	chr16:85840262-85840522(+)$1	260	229	249	15.6469
CACCCCCGUCCUUUGGGGUC	chr5:176916475-176916729(-)$1	254	46	66	14.5466
CUUCUUAAUGACACAAGACU	chr12:124104505-124104800(+)$1	295	38	58	15.8037
AGUAGUACCAUAGAACUAAA	chr2:198353624-198353920(-)$1	296	268	288	15.5184
AGGCGUAACAGAGAACACGU	chr19:6387368-6387672(-)$1	304	123	143	14.4625
GGACUUUGGGGUUUAAGUAC	chr8:95541209-95541433(-)$1	224	153	173	15.6062
UACCCUUCCUUUACAGGAUA	chr1:26227444-26227679(-)$1	235	85	105	14.3117
GGAACCAAACAAGAGGAAAC	chr3:14200037-14200334(-)$1	297	44	64	14.2104
GACUGCUUCUGACUGCGccg	chrX:152953790-152954059(+)$1	269	42	62	14.2366

#DB
((..((........)).)))	chr5:149779320-149779648(+)$1	1	139	159	14.1994
(...((........)).)))	chr14:102551033-102551242(-)$1	1	6	26	14.2970
((..((........))..))	chrX:53436321-53436534(-)$1	1	68	88	14.1909
((((((........)))).)	chr19:18685653-18685883(+)$1	1	163	183	14.9622
((((((........)))).)	chr4:71697986-71698256(-)$1	1	150	170	15.2315
((..((........)).)))	chr16:12009607-12009906(-)$1	1	195	215	14.3931
..((((........))))..	chr16:85698521-85698784(+)$1	1	4	24	15.7379
(...((........))....	chr12:80187540-80187809(-)$1	1	108	128	14.6091
(.((((........))))..	chr11:61081676-61082024(-)$1	1	183	203	15.5792
((.(((........))).))	chr1:93300315-93300566(+)$1	1	27	47	14.6032
.(((((........))))).	chr3:185135779-185136042(-)$1	1	32	52	14.7424
(.(..(........)..).)	chr4:1746576-1746837(+)$1	1	175	195	14.3441
((((((........))))).	chr5:140032518-140032754(+)$1	1	173	193	14.5180
((((((........))))..	chr12:57928742-57929038(-)$1	1	148	168	14.2211
.(((((........))))).	chr1:2160326-2160625(+)$1	1	65	85	14.6825
(.((((........)))).)	chr21:37747765-37748056(+)$1	1	74	94	15.4329
((((((........))))))	chr15:64448001-64448234(-)$1	1	53	73	13.9979
((((((........))))))	chr20:31424444-31424708(+)$1	1	42	62	14.0928
((((.(........).))))	chrM:3059-3270(+)$1	1	121	141	13.9927
((.(((........))))))	chr5:37392014-37392299(+)$1	1	238	258	14.4021
.(((((........))))..	chr17:26945743-26946014(-)$1	1	156	176	14.1118
...(((........))).))	chr19:4493622-4493907(+)$1	1	60	80	14.8691
.(((((........))))).	chr11:812530-812733(+)$1	1	99	119	14.7235
(.((((........)))).)	chr8:11687677-11687967(+)$1	1	237	257	15.6268
((((((........))))))	chr13:107220049-107220334(-)$1	1	169	189	13.9979
(.((((........))))))	chr12:6690362-6690583(-)$1	1	91	111	15.4736
((((((........)))))(	chr20:34637459-34637720(-)$1	1	40	60	13.3535
((.(((........))))).	chr19:6381079-6381306(-)$1	1	156	176	13.1645
(((.((........)).).)	chr1:47745981-47746243(-)$1	1	145	165	13.8868
((((((........))))).	chr17:75398531-75398863(+)$1	1	25	45	14.6358
((((.(........).).))	chr17:7788164-7788485(+)$1	1	256	276	13.9960
..((((........))))..	chr1:27108014-27108256(+)$1	1	148	168	15.6528
..((((........))))))	chr5:32125485-32125751(-)$1	1	195	215	15.6469
...(((........))))))	chr9:136905084-136905316(-)$1	1	106	126	15.0162
(.((((........)))).)	chr12:76444232-76444451(-)$1	1	2	22	15.7802
..((((........)))).)	chr2:47388821-47389099(-)$1	1	57	77	15.9572
(..(((........)))..)	chr8:117859811-117860031(-)$1	1	184	204	14.9772
((((((........))))..	chr12:53345168-53345511(+)$1	1	147	167	15.3468
..((((........)))).)	chr1:35656404-35656648(-)$1	1	209	229	15.8656
((..((........))..))	chr9:36198971-36199193(+)$1	1	112	132	14.1909
((..((........))..))	chr8:17871372-17871643(+)$1	1	32	52	14.1795
)(((((........))))).	chrX:53421684-53421906(-)$1	1	199	219	13.4306
(((.((........))..))	chrX:153672401-153672652(+)$1	1	178	198	13.8906
((..((........))..))	chr15:41762354-41762645(+)$1	1	84	104	14.1909
.(((((........))))).	chr3:160253212-160253453(-)$1	1	60	80	14.5511
((((((........)))).)	chr17:1268050-1268283(-)$1	1	173	193	15.5050
..((((........))))..	chr1:8930418-8930669(-)$1	1	12	32	15.7379
..((((........))))..	chr6:44218738-44218953(+)$1	1	19	39	16.0174
((((((........)))..)	chr12:57106471-57106688(-)$1	1	170	190	14.4389
((((((........))))))	chr20:32681412-32681637(-)$1	1	165	185	13.9979
.(((((........))))))	chr5:891278-891505(-)$1	1	179	199	14.3441
(((..(........)..)))	chr1:70716191-70716465(+)$1	1	6	26	14.0350
((.(((........))).))	chr19:10227396-10227707(-)$1	1	36	56	14.3117
(.((((........))))))	chr15:72766586-72766948(+)$1	1	165	185	15.4342
((.(((........))).))	chr11:61914190-61914472(+)$1	1	68	88	14.6032
.(((((........))))))	chr19:19120613-19120917(-)$1	1	40	60	14.2468
..((((........))))))	chr16:85840262-85840522(+)$1	1	229	249	15.6469
.(((((........))))))	chr5:176916475-176916729(-)$1	1	46	66	14.5466
..((((........)))).)	chr12:124104505-124104800(+)$1	1	38	58	15.8037
..((((........))))..	chr2:198353624-198353920(-)$1	1	268	288	15.5184
(.(.((........)).).)	chr19:6387368-6387672(-)$1	1	123	143	14.4625
(.((((........)))).)	chr8:95541209-95541433(-)$1	1	153	173	15.6062
((.(((........))).))	chr1:26227444-26227679(-)$1	1	85	105	14.3117
((..((........))...)	chr3:14200037-14200334(-)$1	1	44	64	14.2104
(.(.((........))))))	chrX:152953790-152954059(+)$1	1	42	62	14.2366

#PSSM
c : 0.20	d : 0.15	e : 0.12	" : 0.10	g : 0.09	! : 0.06	[ : 0.06	# : 0.04	h : 0.03	f : 0.03	$ : 0.03	= : 0.01	i : 0.01	C : 0.01	b : 0.01	
e : 0.23	[ : 0.15	" : 0.13	c : 0.10	d : 0.09	g : 0.09	! : 0.06	h : 0.03	i : 0.01	a : 0.01	# : 0.01	b : 0.01	f : 0.01	$ : 0.01	
d : 0.35	e : 0.20	! : 0.12	[ : 0.09	a : 0.06	g : 0.06	" : 0.04	c : 0.03	i : 0.01	# : 0.01	
d : 0.35	e : 0.16	c : 0.15	! : 0.13	g : 0.06	[ : 0.06	" : 0.03	i : 0.01	a : 0.01	
d : 0.35	b : 0.20	e : 0.16	c : 0.15	g : 0.04	! : 0.03	[ : 0.03	i : 0.01	
d : 0.35	b : 0.20	e : 0.16	c : 0.15	a : 0.06	g : 0.04	i : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.35	b : 0.20	e : 0.16	c : 0.15	a : 0.06	g : 0.04	i : 0.01	
d : 0.35	b : 0.20	e : 0.16	c : 0.15	g : 0.04	2 : 0.03	] : 0.03	i : 0.01	
d : 0.35	e : 0.16	c : 0.15	2 : 0.10	] : 0.07	g : 0.06	a : 0.03	4 : 0.01	i : 0.01	3 : 0.01	
d : 0.41	e : 0.20	2 : 0.10	] : 0.09	g : 0.07	a : 0.04	4 : 0.01	i : 0.01	b : 0.01	3 : 0.01	
e : 0.29	] : 0.20	c : 0.10	d : 0.09	2 : 0.09	g : 0.07	3 : 0.04	4 : 0.03	6 : 0.01	i : 0.01	9 : 0.01	b : 0.01	
e : 0.18	c : 0.16	d : 0.15	g : 0.10	2 : 0.09	3 : 0.07	h : 0.03	4 : 0.03	] : 0.03	f : 0.03	i : 0.03	6 : 0.01	9 : 0.01	: : 0.01	b : 0.01	

#score	955.7639248911555
#seq	65
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_UTR_m1_run1.txt

#BEAR
=========uuuuuuuuuuuu========	chr8:103266369-103266621(-)$1	252	134	163	27.1835
!!ccca!!bbtttttttttttbb22a]cc	chr11:14479027-14479296(-)$1	269	58	87	23.3564
cc!!fffffftttttttttttffffff22	chr1:203839048-203839256(+)$1	208	165	194	24.2933
!eeeee[bbuuuuuuuuuuuubb22eeee	chr2:176042910-176043188(-)$1	278	139	168	24.2990
[gggggggwwwwwwwwwwwwwwggggggg	chr6:3153863-3154176(-)$1	313	245	274	24.9485
!bb!!ddddvvvvvvvvvvvvvdddd22b	chr14:24685996-24686272(-)$1	276	175	204	23.4500
ff[ffffffuuuuuuuuuuuuffffff]f	chr9:101611702-101611981(+)$1	279	27	56	25.1263
iiiiiiii[attttttttttta]iiiiii	chr5:32601138-32601408(+)$1	270	126	155	26.1604
[hhhhhhhhvvvvvvvvvvvvvhhhhhhh	chr1:115259763-115259993(-)$1	230	149	178	23.3894
b!!gggggggtttttttttttggggggg2	chr22:20099758-20100050(-)$1	292	131	160	24.6906
ccc[fffffftttttttttttffffffcc	chrX:77381483-77381726(+)$1	243	193	222	24.1946
eeee[a[bbtttttttttttbb]a]eeee	chr11:64084130-64084394(-)$1	264	113	142	23.0513
$$$a!!bbvvvvvvvvvvvvvbb22a333	chr22:29696268-29696542(+)$1	274	74	103	23.5268
egggggggvvvvvvvvvvvvvggggggg3	chr5:10433799-10434095(+)$1	296	145	174	25.6135
!dddd!!bbwwwwwwwwwwwwwwbbdddd	chr17:1553861-1554121(-)$1	260	203	232	21.8998
ccc[fffffftttttttttttffffff]c	chr19:8553713-8553986(+)$1	273	75	104	24.3844
[hhhhhhhhvvvvvvvvvvvvvhhhhhhh	chr16:21994607-21994849(+)$1	242	121	150	23.3894
:::ffffffwwwwwwwwwwwwwwffffff	chr1:70904930-70905182(+)$1	252	45	74	20.5892
:ccc[dddduuuuuuuuuuuudddd]ccc	chrX:19377723-19378037(+)$1	314	100	129	23.4169
eeeee[cccwwwwwwwwwwwwwwccceee	chr3:49397446-49397704(-)$1	258	129	158	23.4720
iiiiiiiiiwwwwwwwwwwwwwwiiiiii	chr6:31797626-31797877(+)$1	251	51	80	25.3748
========auuuuuuuuuuuua]======	chr3:23961030-23961288(+)$1	258	144	173	27.1920
ccc[fffffftttttttttttffffff]c	chr4:84377101-84377410(+)$1	309	268	297	24.3844
!hhhhhhhhuuuuuuuuuuuuhhhhhhhh	chr2:44115479-44115739(-)$1	260	71	100	23.1337
=========uuuuuuuuuuuu========	chr1:40538022-40538350(+)$1	328	160	189	27.1835
cc[ffffffuuuuuuuuuuuuffffff22	chr6:7882558-7882814(-)$1	256	151	180	25.2844
c!!ffffffuuuuuuuuuuuuffffff22	chr9:127998651-127998879(-)$1	228	53	82	25.3501
cc####ccctttttttttttccc4444cc	chr11:64084194-64084412(-)$1	218	4	33	23.5133
f"""eeeeevvvvvvvvvvvvveeeee22	chr3:128996366-128996624(+)$1	258	123	152	24.6383
iiiiiiiiiuuuuuuuuuuuuiiiiiiii	chr20:54943033-54943295(+)$1	262	74	103	26.7256
d"""eeeeettttttttttteeeee4444	chr6:13621822-13622116(-)$1	294	233	262	22.9731
gg[bb[ddddtttttttttttdddd]bbg	chr10:126086139-126086429(-)$1	290	91	120	22.4154
++ggggggguuuuuuuuuuuugggggggf	chr19:39220997-39221227(+)$1	230	166	195	24.8464
ddgggggggvvvvvvvvvvvvvggggggg	chr7:105891388-105891636(-)$1	248	18	47	25.9239
dddffffffvvvvvvvvvvvvvffffff:	chr10:85912071-85912333(+)$1	262	149	178	23.5327
iiiiiiiiiwwwwwwwwwwwwwwiiiiii	chr12:49521551-49521800(-)$1	249	213	242	25.3748
cc!!eeeeewwwwwwwwwwwwwweeeee]	chr17:76108958-76109220(-)$1	262	148	177	23.9591
iiiiiiiiiwwwwwwwwwwwwwwiiiiii	chr6:31797569-31797826(+)$1	257	108	137	25.3748
cc[eeeeewwwwwwwwwwwwwweeeee]c	chr17:74730240-74730502(-)$1	262	97	126	23.7634
=======yyyyyyyyyyyyyyyy======	chr17:45734137-45734443(+)$1	306	58	87	23.6485
ee[ccc[bbtttttttttttbb]ccceee	chr2:26413797-26414086(-)$1	289	110	139	23.2614
!eeeee[bbuuuuuuuuuuuubb22eeee	chr2:176042861-176043069(-)$1	208	20	49	24.2990
=========wwwwwwwwwwwwww======	chr12:57628201-57628485(+)$1	284	99	128	25.6974
cc!!cccbbuuuuuuuuuuuubb]ccc]c	chr16:2871306-2871557(+)$1	251	75	104	25.3564
cc[ffffffuuuuuuuuuuuuffffff]c	chr2:178087893-178088140(+)$1	247	76	105	25.6092
eeee!!ddddtttttttttttdddd22ee	chr2:150426196-150426476(-)$1	280	31	60	22.3539
dddd[ddddvvvvvvvvvvvvvdddd]dd	chr14:69846859-69847115(-)$1	256	195	224	23.4463
iiiii[cccuuuuuuuuuuuuccciiiii	chr6:26197365-26197610(-)$1	245	90	119	26.5141
hhhffffffwwwwwwwwwwwwwwffffff	chr6:150045391-150045697(-)$1	306	247	276	23.2982
gg[bbyyyyyyyyyyyyyyyybb]ggggg	chr1:6245130-6245434(-)$1	304	244	273	21.1655
ee!!fffffftttttttttttffffffee	chr12:56555168-56555432(+)$1	264	192	221	24.1328
""ggggggguuuuuuuuuuuuggggggg]	chr17:38328077-38328380(+)$1	303	64	93	26.3488
eeee[ddddtttttttttttddddeeeee	chr12:54936607-54936907(+)$1	300	140	169	22.4016
=========uuuuuuuuuuuu========	chr11:2152387-2152667(-)$1	280	230	259	27.1835
++ggggggguuuuuuuuuuuuggggggge	chr2:61705150-61705452(-)$1	302	98	127	24.8960
[eeeee[awwwwwwwwwwwwwwa]eeeee	chr11:57509573-57509822(+)$1	249	80	109	23.6413
gggg[ddddvvvvvvvvvvvvvdddd]gg	chr1:25568668-25569018(-)$1	350	65	94	24.8379
="""eeeeeuuuuuuuuuuuueeeee666	chr12:120899406-120899706(-)$1	300	43	72	23.3940
=========uuuuuuuuuuuu========	chr6:30032421-30032734(+)$1	313	33	62	27.1835
ccc[fffffftttttttttttffffffcc	chrX:77381526-77381736(+)$1	210	150	179	24.1946
==========ttttttttttt========	chr15:34671252-34671501(-)$1	249	170	199	25.8219
gggg[dddduuuuuuuuuuuudddd]ggg	chr17:40463241-40463514(+)$1	273	240	269	24.9612

#otherMatches

#Seq PSSM
UUUGUAGAUUUUUUUCCAUUUGUCUAUAA	chr8:103266369-103266621(-)$1	252	134	163	27.1835
AUAGCCUUUCCCUUAAAUCAAGAUUGAGU	chr11:14479027-14479296(-)$1	269	58	87	23.3564
UUACAUUGCUUCUUACUAUUCAGCAGUAG	chr1:203839048-203839256(+)$1	208	165	194	24.2933
GAUGGUUGCUUUCUUGAUUUUGUUUGCCA	chr2:176042910-176043188(-)$1	278	139	168	24.2990
AUCUAUACUAAUAAAAAAGCAUGUGUAGA	chr6:3153863-3154176(-)$1	313	245	274	24.9485
UGGUUGUCAAUAAAAUAUUUCCUGGCCUC	chr14:24685996-24686272(-)$1	276	175	204	23.4500
UUGGUAUUUACAAGAAUUCCCAGGUACGA	chr9:101611702-101611981(+)$1	279	27	56	25.1263
CUAAAUGUUCUCCAAGCUAUUGUAUGUUU	chr5:32601138-32601408(+)$1	270	126	155	26.1604
UUGGUGUAGCUUCUGUUCAACUUUAUAUC	chr1:115259763-115259993(-)$1	230	149	178	23.3894
GAAGACAGGUGGGUUCCUGUAGCCUGUUG	chr22:20099758-20100050(-)$1	292	131	160	24.6906
CAGCAUGGAAACAAGAUGAAAUUCCAUUU	chrX:77381483-77381726(+)$1	243	193	222	24.1946
AUACCCUGUUUCCGAAUUCUGCCGUGUGU	chr11:64084130-64084394(-)$1	264	113	142	23.0513
UUUCUUCCUUCUUUUAAAAAUGGUUGUUU	chr22:29696268-29696542(+)$1	274	74	103	23.5268
UAAGAUUCUGCUGUUCUCCCUGGAUCUUC	chr5:10433799-10434095(+)$1	296	145	174	25.6135
AGGGGCUGGUUUGUUUUUUUUUUCCCCCC	chr17:1553861-1554121(-)$1	260	203	232	21.8998
UCUUGUUAACCAUUUUAAUUUGUUGGCUG	chr19:8553713-8553986(+)$1	273	75	104	24.3844
CUUUGUUUUAGAUGCUUUAAAGGAGACAG	chr16:21994607-21994849(+)$1	242	121	150	23.3894
UUUUCUGUAUGUCAUGUUAUAAUUACAGG	chr1:70904930-70905182(+)$1	252	45	74	20.5892
AACUUGGUUAAGGAGGAAGAAAACCCAGU	chrX:19377723-19378037(+)$1	314	100	129	23.4169
GAUUACUGGCCUUUUUCAUUUAUCUAUAA	chr3:49397446-49397704(-)$1	258	129	158	23.4720
GUCUUUGAGGUGGACUGUUGGGACUCAAG	chr6:31797626-31797877(+)$1	251	51	80	25.3748
AAGAUAAACUUUUUUGUCUUUGCUUUAUC	chr3:23961030-23961288(+)$1	258	144	173	27.1920
GGCAUUAACCUUAGUCCUAAUGGUUAGAG	chr4:84377101-84377410(+)$1	309	268	297	24.3844
UGAGGGAAAAAUAAAUGAAAAUUUUCUUU	chr2:44115479-44115739(-)$1	260	71	100	23.1337
UUACCAAAAUAUGCAACUUUUUUUUGGUG	chr1:40538022-40538350(+)$1	328	160	189	27.1835
UGAAACAUGUCUUUAGUUCCUCAUGUUAA	chr6:7882558-7882814(-)$1	256	151	180	25.2844
GAACUUUUGUUAGGAAAAAAUUGAAAGAA	chr9:127998651-127998879(-)$1	228	53	82	25.3501
GGAAUCUGGACGUAUGUUCCCCAUCAGCC	chr11:64084194-64084412(-)$1	218	4	33	23.5133
UAAAUCUUGCUGUCCACCCUUCCAGGAAA	chr3:128996366-128996624(+)$1	258	123	152	24.6383
CUUUGUAGGACAAUUUCUCCACCUGCAAG	chr20:54943033-54943295(+)$1	262	74	103	26.7256
CCUUUAUUUAUAUAAAAACCAAAUAUUUA	chr6:13621822-13622116(-)$1	294	233	262	22.9731
UUUGCUUUGUAACGUAACUAAAUAAUGUA	chr10:126086139-126086429(-)$1	290	91	120	22.4154
AAGAAGGAUUCCUGCAGCAUCAUCUUUUU	chr19:39220997-39221227(+)$1	230	166	195	24.8464
AAGAAUGGCAAGGUGACAAAAAGCUAUUC	chr7:105891388-105891636(-)$1	248	18	47	25.9239
CAUCAUAUUUAAAUGUUCCGGUAAUGUGA	chr10:85912071-85912333(+)$1	262	149	178	23.5327
AAGUAAAGUCAUUAACAUCAAAAGCUUUG	chr12:49521551-49521800(-)$1	249	213	242	25.3748
GCUUGGGCAUCCCCAAUGAACUCUGCCCU	chr17:76108958-76109220(-)$1	262	148	177	23.9591
GUCUUUGAGGUGGACUGUUGGGACUCAAG	chr6:31797569-31797826(+)$1	257	108	137	25.3748
CCUUUUUUUCCCUCUUCCCCCUAAAAAUG	chr17:74730240-74730502(-)$1	262	97	126	23.7634
UUGUAUCUUUUGUCUUUUUUUUUGGUGCA	chr17:45734137-45734443(+)$1	306	58	87	23.6485
CAGCCAAGACCAUCUCUCCCUCCUGGUGA	chr2:26413797-26414086(-)$1	289	110	139	23.2614
GAUGGUUGCUUUCUUGAUUUUGUUUGCCA	chr2:176042861-176043069(-)$1	208	20	49	24.2990
CUGAGAAGAUCUUUUCUUUUUCCUUUUUU	chr12:57628201-57628485(+)$1	284	99	128	25.6974
CCCUUGGCCUGUAACAAGAAUGGACUGUG	chr16:2871306-2871557(+)$1	251	75	104	25.3564
UUCCUUCACAACAUGGUUUUAGUGAAGCA	chr2:178087893-178088140(+)$1	247	76	105	25.6092
UUGGGUUGAUCUAUAAACACUGUCAGACU	chr2:150426196-150426476(-)$1	280	31	60	22.3539
GGGGGGUGGAAAUGCAGUUUAGCCAUGUC	chr14:69846859-69847115(-)$1	256	195	224	23.4463
ACUUUCGUUUUUUCGUCAUUUAGCAGGGU	chr6:26197365-26197610(-)$1	245	90	119	26.5141
UUUGCUUCUAUCUGUCUUAUCUCGGGAGC	chr6:150045391-150045697(-)$1	306	247	276	23.2982
CUUGUAAUAAAAUUGAAACUCACUGGUUU	chr1:6245130-6245434(-)$1	304	244	273	21.1655
CUCGGUUCGGUUCUUUCUUUCCUGAACAG	chr12:56555168-56555432(+)$1	264	192	221	24.1328
AAGGAGGAAAUAACUAAGAGAUUCUUCUA	chr17:38328077-38328380(+)$1	303	64	93	26.3488
AAGUAUAUUUUCUAUCUUCUGGUGACUUG	chr12:54936607-54936907(+)$1	300	140	169	22.4016
GAUACACCCGUAGGGUGGGCGGGGUGUGU	chr11:2152387-2152667(-)$1	280	230	259	27.1835
UUUACACAGUUCUUUUUGUUUUUGUGUGU	chr2:61705150-61705452(-)$1	302	98	127	24.8960
GAGGUGGUGGAAGAGUUGAAGAAGUACCU	chr11:57509573-57509822(+)$1	249	80	109	23.6413
AUGUAAAUACUUAACACUCAAAUAUUAAC	chr1:25568668-25569018(-)$1	350	65	94	24.8379
AUUAGCAGUGAAACAUUUUAAACUGCAGA	chr12:120899406-120899706(-)$1	300	43	72	23.3940
AGGAGAAGGAAGACUCUUGACCUUUUUCC	chr6:30032421-30032734(+)$1	313	33	62	27.1835
CAGCAUGGAAACAAGAUGAAAUUCCAUUU	chrX:77381526-77381736(+)$1	210	150	179	24.1946
GUGGCAUUAUUGACUGCUGAUGUGAUGCU	chr15:34671252-34671501(-)$1	249	170	199	25.8219
CUCUCUGUUUGUAACCUUGUCGACAAAGA	chr17:40463241-40463514(+)$1	273	240	269	24.9612

#DB
(((((((((............))))))))	chr8:103266369-103266621(-)$1	1	134	163	27.1835
..((((..((...........))..).))	chr11:14479027-14479296(-)$1	1	58	87	23.3564
((..((((((...........))))))..	chr1:203839048-203839256(+)$1	1	165	194	24.2933
.(((((.((............))..))))	chr2:176042910-176043188(-)$1	1	139	168	24.2990
.(((((((..............)))))))	chr6:3153863-3154176(-)$1	1	245	274	24.9485
.((..((((.............))))..)	chr14:24685996-24686272(-)$1	1	175	204	23.4500
((.((((((............)))))).)	chr9:101611702-101611981(+)$1	1	27	56	25.1263
((((((((.(...........).))))))	chr5:32601138-32601408(+)$1	1	126	155	26.1604
.((((((((.............)))))))	chr1:115259763-115259993(-)$1	1	149	178	23.3894
(..(((((((...........))))))).	chr22:20099758-20100050(-)$1	1	131	160	24.6906
(((.((((((...........))))))))	chrX:77381483-77381726(+)$1	1	193	222	24.1946
((((.(.((...........)).).))))	chr11:64084130-64084394(-)$1	1	113	142	23.0513
...(..((.............))..)...	chr22:29696268-29696542(+)$1	1	74	103	23.5268
((((((((.............))))))).	chr5:10433799-10434095(+)$1	1	145	174	25.6135
.((((..((..............))))))	chr17:1553861-1554121(-)$1	1	203	232	21.8998
(((.((((((...........)))))).)	chr19:8553713-8553986(+)$1	1	75	104	24.3844
.((((((((.............)))))))	chr16:21994607-21994849(+)$1	1	121	150	23.3894
...((((((..............))))))	chr1:70904930-70905182(+)$1	1	45	74	20.5892
.(((.((((............)))).)))	chrX:19377723-19378037(+)$1	1	100	129	23.4169
(((((.(((..............))))))	chr3:49397446-49397704(-)$1	1	129	158	23.4720
(((((((((..............))))))	chr6:31797626-31797877(+)$1	1	51	80	25.3748
(((((((((............).))))))	chr3:23961030-23961288(+)$1	1	144	173	27.1920
(((.((((((...........)))))).)	chr4:84377101-84377410(+)$1	1	268	297	24.3844
.((((((((............))))))))	chr2:44115479-44115739(-)$1	1	71	100	23.1337
(((((((((............))))))))	chr1:40538022-40538350(+)$1	1	160	189	27.1835
((.((((((............))))))..	chr6:7882558-7882814(-)$1	1	151	180	25.2844
(..((((((............))))))..	chr9:127998651-127998879(-)$1	1	53	82	25.3501
((....(((...........)))....))	chr11:64084194-64084412(-)$1	1	4	33	23.5133
(...(((((.............)))))..	chr3:128996366-128996624(+)$1	1	123	152	24.6383
(((((((((............))))))))	chr20:54943033-54943295(+)$1	1	74	103	26.7256
(...(((((...........)))))....	chr6:13621822-13622116(-)$1	1	233	262	22.9731
((.((.((((...........)))).)))	chr10:126086139-126086429(-)$1	1	91	120	22.4154
..(((((((............))))))))	chr19:39220997-39221227(+)$1	1	166	195	24.8464
(((((((((.............)))))))	chr7:105891388-105891636(-)$1	1	18	47	25.9239
)))((((((.............)))))).	chr10:85912071-85912333(+)$1	1	149	178	23.5327
(((((((((..............))))))	chr12:49521551-49521800(-)$1	1	213	242	25.3748
((..(((((..............))))).	chr17:76108958-76109220(-)$1	1	148	177	23.9591
(((((((((..............))))))	chr6:31797569-31797826(+)$1	1	108	137	25.3748
((.(((((..............))))).)	chr17:74730240-74730502(-)$1	1	97	126	23.7634
(((((((................))))))	chr17:45734137-45734443(+)$1	1	58	87	23.6485
((.(((.((...........)).))))))	chr2:26413797-26414086(-)$1	1	110	139	23.2614
.(((((.((............))..))))	chr2:176042861-176043069(-)$1	1	20	49	24.2990
(((((((((..............))))))	chr12:57628201-57628485(+)$1	1	99	128	25.6974
((..(((((............)).))).)	chr16:2871306-2871557(+)$1	1	75	104	25.3564
((.((((((............)))))).)	chr2:178087893-178088140(+)$1	1	76	105	25.6092
((((..((((...........))))..))	chr2:150426196-150426476(-)$1	1	31	60	22.3539
((((.((((.............)))).))	chr14:69846859-69847115(-)$1	1	195	224	23.4463
(((((.(((............))))))))	chr6:26197365-26197610(-)$1	1	90	119	26.5141
)))((((((..............))))))	chr6:150045391-150045697(-)$1	1	247	276	23.2982
((.((................)).)))))	chr1:6245130-6245434(-)$1	1	244	273	21.1655
((..((((((...........))))))))	chr12:56555168-56555432(+)$1	1	192	221	24.1328
..(((((((............))))))).	chr17:38328077-38328380(+)$1	1	64	93	26.3488
((((.((((...........)))))))))	chr12:54936607-54936907(+)$1	1	140	169	22.4016
(((((((((............))))))))	chr11:2152387-2152667(-)$1	1	230	259	27.1835
..(((((((............))))))))	chr2:61705150-61705452(-)$1	1	98	127	24.8960
.(((((.(..............).)))))	chr11:57509573-57509822(+)$1	1	80	109	23.6413
((((.((((.............)))).))	chr1:25568668-25569018(-)$1	1	65	94	24.8379
(...(((((............)))))...	chr12:120899406-120899706(-)$1	1	43	72	23.3940
(((((((((............))))))))	chr6:30032421-30032734(+)$1	1	33	62	27.1835
(((.((((((...........))))))))	chrX:77381526-77381736(+)$1	1	150	179	24.1946
((((((((((...........))))))))	chr15:34671252-34671501(-)$1	1	170	199	25.8219
((((.((((............)))).)))	chr17:40463241-40463514(+)$1	1	240	269	24.9612

#PSSM
c : 0.19	= : 0.14	e : 0.11	! : 0.09	i : 0.09	[ : 0.06	d : 0.06	g : 0.06	f : 0.03	: : 0.03	+ : 0.03	b : 0.01	$ : 0.01	h : 0.01	" : 0.01	
c : 0.19	e : 0.14	= : 0.12	g : 0.09	i : 0.09	h : 0.06	d : 0.06	" : 0.06	! : 0.04	+ : 0.03	b : 0.01	f : 0.01	$ : 0.01	: : 0.01	
= : 0.12	g : 0.12	e : 0.11	[ : 0.11	c : 0.09	! : 0.09	i : 0.09	h : 0.06	d : 0.04	" : 0.04	b : 0.01	$ : 0.01	: : 0.01	# : 0.01	
g : 0.14	= : 0.12	e : 0.12	f : 0.11	i : 0.09	! : 0.08	[ : 0.06	c : 0.04	h : 0.04	" : 0.04	d : 0.03	b : 0.03	a : 0.01	# : 0.01	
f : 0.20	e : 0.14	= : 0.12	g : 0.11	i : 0.09	[ : 0.09	c : 0.04	! : 0.04	h : 0.04	b : 0.03	d : 0.01	# : 0.01	
f : 0.20	= : 0.12	e : 0.12	g : 0.11	d : 0.09	i : 0.08	h : 0.04	! : 0.04	[ : 0.04	a : 0.03	c : 0.03	# : 0.01	y : 0.01	
f : 0.20	= : 0.12	d : 0.12	g : 0.11	[ : 0.08	i : 0.08	e : 0.08	c : 0.06	h : 0.04	! : 0.03	b : 0.01	y : 0.01	
f : 0.20	d : 0.12	= : 0.11	b : 0.11	g : 0.11	i : 0.08	e : 0.08	h : 0.04	c : 0.04	y : 0.03	! : 0.01	a : 0.01	
f : 0.20	d : 0.12	b : 0.11	= : 0.09	g : 0.08	i : 0.06	e : 0.06	w : 0.04	h : 0.04	c : 0.04	v : 0.03	y : 0.03	[ : 0.01	a : 0.01	
u : 0.33	w : 0.19	v : 0.16	f : 0.09	t : 0.08	d : 0.03	y : 0.03	b : 0.01	a : 0.01	g : 0.01	= : 0.01	
u : 0.33	t : 0.27	w : 0.19	v : 0.16	y : 0.03	
u : 0.33	t : 0.27	w : 0.19	v : 0.16	y : 0.03	
u : 0.33	t : 0.27	w : 0.19	v : 0.16	y : 0.03	
u : 0.33	t : 0.27	w : 0.19	v : 0.16	y : 0.03	
u : 0.33	t : 0.27	w : 0.19	v : 0.16	y : 0.03	
u : 0.33	t : 0.27	w : 0.19	v : 0.16	y : 0.03	
u : 0.33	t : 0.27	w : 0.19	v : 0.16	y : 0.03	
u : 0.33	t : 0.27	w : 0.19	v : 0.16	y : 0.03	
u : 0.33	t : 0.27	w : 0.19	v : 0.16	y : 0.03	
u : 0.33	t : 0.27	w : 0.19	v : 0.16	y : 0.03	
u : 0.33	t : 0.19	w : 0.19	v : 0.16	b : 0.03	y : 0.03	c : 0.01	e : 0.01	d : 0.01	
w : 0.19	f : 0.16	b : 0.12	v : 0.12	= : 0.08	g : 0.08	d : 0.08	a : 0.03	c : 0.03	e : 0.03	h : 0.01	i : 0.01	y : 0.01	
f : 0.17	w : 0.14	d : 0.12	g : 0.11	b : 0.09	= : 0.08	] : 0.06	e : 0.06	h : 0.04	c : 0.03	i : 0.01	y : 0.01	a : 0.01	
f : 0.20	= : 0.12	d : 0.12	g : 0.11	i : 0.08	e : 0.08	2 : 0.06	h : 0.04	c : 0.04	] : 0.04	a : 0.01	b : 0.01	4 : 0.01	
f : 0.20	= : 0.12	g : 0.12	d : 0.11	e : 0.11	i : 0.09	2 : 0.06	h : 0.04	c : 0.04	] : 0.01	b : 0.01	4 : 0.01	
f : 0.20	e : 0.14	= : 0.12	g : 0.12	i : 0.09	d : 0.06	h : 0.04	] : 0.04	c : 0.04	a : 0.03	4 : 0.03	2 : 0.01	
f : 0.20	e : 0.16	g : 0.14	= : 0.12	i : 0.09	] : 0.04	h : 0.04	2 : 0.03	c : 0.03	4 : 0.03	3 : 0.01	d : 0.01	b : 0.01	6 : 0.01	
e : 0.16	g : 0.16	= : 0.12	] : 0.09	i : 0.09	c : 0.08	2 : 0.08	h : 0.04	f : 0.04	d : 0.03	3 : 0.01	4 : 0.01	b : 0.01	6 : 0.01	
c : 0.16	e : 0.16	= : 0.12	g : 0.09	i : 0.09	2 : 0.08	f : 0.06	h : 0.04	3 : 0.03	d : 0.03	] : 0.03	b : 0.01	4 : 0.01	: : 0.01	6 : 0.01	

#score	1515.0292176816401
#seq	62
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF969AOQ_PUM1_CDS_m3_run1.txt

#BEAR
ffffff!!cccmmmmccc22ffffff	chr6:44218191-44218404(+)$1	213	117	143	13.6631
ggggggg!!bbmmmmbb22ggggggg	chr14:21831140-21831409(-)$1	269	53	79	11.9815
ggggggg[cccmmmmcccggggggg:	chr17:16004823-16005146(-)$1	323	8	34	12.1544
ffffff[ddddmmmmddddffffff2	chr14:102548670-102548881(-)$1	211	89	115	10.1781
========[bbmmmmbb]========	chr10:103921220-103921487(+)$1	267	193	219	11.9341
d!!a!!a[cccmmmmccc]a22a22d	chr12:19592964-19593369(+)$1	405	124	150	13.0105
eeee[bb[cccmmmmccc]bb22eee	chr10:120801515-120801762(-)$1	247	62	88	11.4526
gggg[a!!cccmmmmccc]a]ggggg	chr11:67375968-67376248(+)$1	280	213	239	14.1063
[ffffff[cccmmmmccc]ffffffe	chr19:47593121-47593370(-)$1	249	186	212	12.6894
===$$$$$cccmmmmccc4444====	chr2:136528180-136528406(+)$1	226	172	198	13.0554
iiiiiiiii[ammmma]iiiiiiiii	chr19:2435014-2435271(-)$1	257	42	68	10.9816
ffff[ccc[bbmmmmbbcccffffff	chr1:93301646-93301860(+)$1	214	8	34	10.8202
fffff!!ddddmmmmdddd22fffff	chr3:46964717-46964955(-)$1	238	115	141	11.0824
"""ccc!!cccmmmmccc22ccc444	chr20:56093781-56094017(-)$1	236	153	179	13.5135
g"""gggggggmmmmggggggg]ggg	chr21:33976479-33976695(-)$1	216	123	149	11.1435
a[dddd!!cccmmmmccc22dddd]a	chr12:6879042-6879265(+)$1	223	155	181	12.1035
b[ccc!!a[bbmmmmbb]a22ccc]b	chr14:21679464-21679667(-)$1	203	65	91	11.1028
ffff[bb[cccmmmmccc22bb]fff	chr5:126154666-126154934(+)$1	268	167	193	12.6304
eeee####cccmmmmccc4444eeee	chr4:129208475-129208721(-)$1	246	142	168	12.9780
dddd!!a[cccmmmmccc]a22dddd	chr19:11172374-11172645(+)$1	271	160	186	11.8953
gg[ccc!!cccmmmmccc]cccgggg	chr2:10927379-10927667(-)$1	288	213	239	13.6418
ee!!gggggggmmmmggggggg22ee	chr2:233697513-233697765(+)$1	252	32	58	10.5476
d!!a!!a[cccmmmmccc]a22a22d	chr12:19592830-19593164(+)$1	334	258	284	13.0105
ggggggg!!bbmmmmbb333gggggg	chr2:232326260-232326507(-)$1	247	158	184	12.8120
:ffffff[cccmmmmccc]ffffff:	chr7:102114705-102114934(-)$1	229	182	208	10.7081
[ccc!!eeeeemmmmeeeee333ccc	chrX:64732622-64732877(-)$1	255	85	111	9.8139
:gggggggcccmmmmccc]ggggggg	chr3:170906458-170906722(-)$1	264	21	47	12.0606
!!ccca[ddddmmmmdddd]a]ccc]	chr13:98666194-98666450(+)$1	256	126	152	10.7650
dd[bb!!ddddmmmmdddd333bb]d	chr19:11169414-11169644(+)$1	230	179	205	10.3017
ffffff!!cccmmmmccc22ffffff	chr6:44218204-44218415(+)$1	211	104	130	13.6631
ceeeee!!cccmmmmccc22eeeee2	chrX:119293072-119293347(+)$1	275	21	47	12.5864
d[a!!ccc[ammmmaccc22a]dddd	chr1:8931911-8932145(-)$1	234	3	29	9.9697
iiibb"""cccmmmmccc4444bb22	chr11:63970847-63971126(+)$1	279	172	198	12.5498
gg"""ffffffmmmmffffff333gg	chr3:184042564-184042836(+)$1	272	42	68	10.1528
eeee!!a!!ccclllccc22a4444e	chr8:144940627-144940884(-)$1	257	81	107	10.9576
!!eeeee[cccmmmmccc]eeeee22	chr19:2199811-2200074(+)$1	263	83	109	11.6567
gggggg[ddddmmmmdddd22ggggg	chr14:24679759-24680075(-)$1	316	177	203	11.3768
a[eeeee[cccmmmmccceeeee]a2	chr16:3779002-3779276(-)$1	274	198	224	11.2328
=========bbmmmmbb]========	chr1:162560091-162560338(+)$1	247	162	188	11.8793
eee[ccc[cccmmmmcccccc22eee	chr6:4892147-4892419(+)$1	272	148	174	11.8377
:ffffff[cccmmmmccc]ffffff:	chrX:24735426-24735704(+)$1	278	47	73	10.7081
cc!!bb"""ccclllccc22bb]ccc	chr6:33258029-33258288(+)$1	259	127	153	9.9598
iiiiiii[cccmmmmccc22iiiiii	chr12:25034133-25034419(-)$1	286	63	89	13.7945
ffffff!!cccmmmmccc666666ff	chr1:52299633-52299854(-)$1	221	97	123	10.9910
cc[ccc[ddddmmmmddddcccccc4	chr19:19605033-19605293(+)$1	260	197	223	10.2332
ggg!!ccc[ccclllccc]ccc4444	chr17:42288556-42288795(-)$1	239	44	70	9.9944
gggggg!!cccmmmmccc22gggggg	chr1:38423689-38423982(-)$1	293	147	173	14.3043
eeeegggggggmmmmggggggg333e	chr17:65821702-65821959(+)$1	257	168	194	10.9278
ff[a[a"""bbmmmmbb]a]a]ffff	chr11:2990978-2991252(-)$1	274	148	174	12.0817
fffff[a!!bbmmmmbb22affffff	chr9:136901069-136901479(-)$1	410	66	92	11.6432
=======ddddmmmmdddd]======	chr19:47588541-47588774(-)$1	233	40	66	11.3726
ffffff"""bbmmmmbb4444fffff	chr12:104326018-104326258(+)$1	240	85	111	11.9971
ff[bb"""cccmmmmccc333bb]ff	chr5:176942088-176942304(-)$1	216	95	121	13.3770

#otherMatches

#Seq PSSM
UGACUGGGAAGACCACUUGGCAGUCA	chr6:44218191-44218404(+)$1	213	117	143	13.6631
UGUCAUAUGGCUCACGUGUUGUGAUA	chr14:21831140-21831409(-)$1	269	53	79	11.9815
CUGUAUCAUUAUCUUUAAGGUGCAGA	chr17:16004823-16005146(-)$1	323	8	34	12.1544
UUUGAUUACAGGUGGUUGUGUCAAAC	chr14:102548670-102548881(-)$1	211	89	115	10.1781
AAGAAAGUAAGUUGUCUCACUUUCUU	chr10:103921220-103921487(+)$1	267	193	219	11.9341
ggacggcaaggagggccuggaggagc	chr12:19592964-19593369(+)$1	405	124	150	13.0105
GAGGGUUGGAUGAUGAUCGAGGACCU	chr10:120801515-120801762(-)$1	247	62	88	11.4526
CUCAGAUGGCAGGUGUGUGUGUGGGG	chr11:67375968-67376248(+)$1	280	213	239	14.1063
AGCCACCCGGGCCAACCCCGGUGGCC	chr19:47593121-47593370(-)$1	249	186	212	12.6894
AGUAGCUUUAGAUUACUACCAGACUG	chr2:136528180-136528406(+)$1	226	172	198	13.0554
CUUGGGCCUGGUGCUUGGGGCCCAGG	chr19:2435014-2435271(-)$1	257	42	68	10.9816
GUCAGUGGUCCUUACGGUUAUGACAU	chr1:93301646-93301860(+)$1	214	8	34	10.8202
UCGCUCCUCGGAAGCCUGACUGGUGA	chr3:46964717-46964955(-)$1	238	115	141	11.0824
ACUCAUGAGAAACCCUUUAAAUGUUC	chr20:56093781-56094017(-)$1	236	153	179	13.5135
UGUGUUACCAUGGAGAUGGUGAAAGA	chr21:33976479-33976695(-)$1	216	123	149	11.1435
AGUCUGGGCUCAAAGGAGAGCAGAGU	chr12:6879042-6879265(+)$1	223	155	181	12.1035
UGGAUGAUGAUGAUAAUGAAGAUCGG	chr14:21679464-21679667(-)$1	203	65	91	11.1028
GGUAAGGAACUUAAGGGUCACCCUAC	chr5:126154666-126154934(+)$1	268	167	193	12.6304
GUCAAUGGGAAAGUCUUCGACGUGAC	chr4:129208475-129208721(-)$1	246	142	168	12.9780
GCUGAGAUGGCAUAGGCCUUAGCAGU	chr19:11172374-11172645(+)$1	271	160	186	11.8953
UCUGCUAAAAGGCUCCUUCAGUGAGC	chr2:10927379-10927667(-)$1	288	213	239	13.6418
uuaauuuuuCCUUCUGGAAAGGAAGA	chr2:233697513-233697765(+)$1	252	32	58	10.5476
ggacggcaaggagggccuggaggagc	chr12:19592830-19593164(+)$1	334	258	284	13.0105
CAGCAGCGAUGAAAGCAGCAGCUGCU	chr2:232326260-232326507(-)$1	247	158	184	12.8120
CCAGGCCUGGGACAGCCCUGGCCUGU	chr7:102114705-102114934(-)$1	229	182	208	10.7081
UCUCUCCUCAGCACCUUGGGCCUGAG	chrX:64732622-64732877(-)$1	255	85	111	9.8139
aauaaaaUAAUUCACAUUCAUUUUAU	chr3:170906458-170906722(-)$1	264	21	47	12.0606
CAUGCCUCUUCUCCUGGAGUGUGCAA	chr13:98666194-98666450(+)$1	256	126	152	10.7650
GGCCACUCCCACAGCUGGGCUUUGAC	chr19:11169414-11169644(+)$1	230	179	205	10.3017
UGACUGGGAAGACCACUUGGCAGUCA	chr6:44218204-44218415(+)$1	211	104	130	13.6631
GUUCCUGGCCACCUAUGGGAAGGAGA	chrX:119293072-119293347(+)$1	275	21	47	12.5864
CCCUAAUGACAAAUGCAUCUGUGGGC	chr1:8931911-8932145(-)$1	234	3	29	9.9697
GCAGCAGAUCAUGAGUGACCCAGCCA	chr11:63970847-63971126(+)$1	279	172	198	12.5498
GGGUUUUAGCCGAGUGGCUGGUUAUC	chr3:184042564-184042836(+)$1	272	42	68	10.1528
ACGCAAGAGCUCAUGGAGGACGACCG	chr8:144940627-144940884(-)$1	257	81	107	10.9576
GAUUUCCUCUCAGAAGAGUGGAGGGA	chr19:2199811-2200074(+)$1	263	83	109	11.6567
AUUUCUCGGCCUAUGGGCUUUGGAGA	chr14:24679759-24680075(-)$1	316	177	203	11.3768
CCCGGGGAGCCAGAUGGCCCCCGUGA	chr16:3779002-3779276(-)$1	274	198	224	11.2328
GGGCCAUUUCAUAGAUGAAAAUGGCU	chr1:162560091-162560338(+)$1	247	162	188	11.8793
CAUCUCUCUCCAGCCGGAAGAACAUG	chr6:4892147-4892419(+)$1	272	148	174	11.8377
UGACUUUGAUGAGCCCAUGGAAGUUG	chrX:24735426-24735704(+)$1	278	47	73	10.7081
CUAGUCAAACAGGAGCUGGGGGAGGC	chr6:33258029-33258288(+)$1	259	127	153	9.9598
UUGAUCUCCAGUUAUUUGAAGGAUUG	chr12:25034133-25034419(-)$1	286	63	89	13.7945
AACUGAUUGUGAACGCACUGUCUUUC	chr1:52299633-52299854(-)$1	221	97	123	10.9910
GCACUGCUGCUGUCAAGCACAGGCUC	chr19:19605033-19605293(+)$1	260	197	223	10.2332
GUCUGUGGUGACACUGUCUCCAGACU	chr17:42288556-42288795(-)$1	239	44	70	9.9944
UUUGGGCUAGCCCAGGCUUCCCUAAG	chr1:38423689-38423982(-)$1	293	147	173	14.3043
CAGCCCGCGGCUCCCGCUGCGGAGCG	chr17:65821702-65821959(+)$1	257	168	194	10.9278
GAUCCCAAAGGAAUUCCAGAGUUCUG	chr11:2990978-2991252(-)$1	274	148	174	12.0817
CUCCUACGACUCAGAGGAAGAGGAGG	chr9:136901069-136901479(-)$1	410	66	92	11.6432
GUGGGGACAGUGUUCAUUGUUCCCUA	chr19:47588541-47588774(-)$1	233	40	66	11.3726
GAACUUAGAGAGAAGUCGGAAAAGUU	chr12:104326018-104326258(+)$1	240	85	111	11.9971
CAGAUCCAGGGCAUCCCCACCAUGUG	chr5:176942088-176942304(-)$1	216	95	121	13.3770

#DB
((((((..(((....)))..))))))	chr6:44218191-44218404(+)$1	1	117	143	13.6631
(((((((..((....))..)))))))	chr14:21831140-21831409(-)$1	1	53	79	11.9815
(((((((.(((....)))))))))).	chr17:16004823-16005146(-)$1	1	8	34	12.1544
((((((.((((....)))))))))).	chr14:102548670-102548881(-)$1	1	89	115	10.1781
((((((((.((....)).))))))))	chr10:103921220-103921487(+)$1	1	193	219	11.9341
(..(..(.(((....))).)..)..)	chr12:19592964-19593369(+)$1	1	124	150	13.0105
((((.((.(((....))).))..)))	chr10:120801515-120801762(-)$1	1	62	88	11.4526
((((.(..(((....))).).)))))	chr11:67375968-67376248(+)$1	1	213	239	14.1063
.((((((.(((....))).)))))))	chr19:47593121-47593370(-)$1	1	186	212	12.6894
(((.....(((....)))....))))	chr2:136528180-136528406(+)$1	1	172	198	13.0554
(((((((((.(....).)))))))))	chr19:2435014-2435271(-)$1	1	42	68	10.9816
((((.(((.((....)))))))))))	chr1:93301646-93301860(+)$1	1	8	34	10.8202
(((((..((((....))))..)))))	chr3:46964717-46964955(-)$1	1	115	141	11.0824
...(((..(((....)))..)))...	chr20:56093781-56094017(-)$1	1	153	179	13.5135
(...(((((((....))))))).)))	chr21:33976479-33976695(-)$1	1	123	149	11.1435
(.((((..(((....)))..)))).)	chr12:6879042-6879265(+)$1	1	155	181	12.1035
(.(((..(.((....)).)..))).)	chr14:21679464-21679667(-)$1	1	65	91	11.1028
((((.((.(((....)))..)).)))	chr5:126154666-126154934(+)$1	1	167	193	12.6304
((((....(((....)))....))))	chr4:129208475-129208721(-)$1	1	142	168	12.9780
((((..(.(((....))).)..))))	chr19:11172374-11172645(+)$1	1	160	186	11.8953
((.(((..(((....))).)))))))	chr2:10927379-10927667(-)$1	1	213	239	13.6418
((..(((((((....)))))))..))	chr2:233697513-233697765(+)$1	1	32	58	10.5476
(..(..(.(((....))).)..)..)	chr12:19592830-19593164(+)$1	1	258	284	13.0105
(((((((..((....))...))))))	chr2:232326260-232326507(-)$1	1	158	184	12.8120
.((((((.(((....))).)))))).	chr7:102114705-102114934(-)$1	1	182	208	10.7081
.(((..(((((....)))))...)))	chrX:64732622-64732877(-)$1	1	85	111	9.8139
.((((((((((....))).)))))))	chr3:170906458-170906722(-)$1	1	21	47	12.0606
..((((.((((....)))).).))).	chr13:98666194-98666450(+)$1	1	126	152	10.7650
((.((..((((....))))...)).)	chr19:11169414-11169644(+)$1	1	179	205	10.3017
((((((..(((....)))..))))))	chr6:44218204-44218415(+)$1	1	104	130	13.6631
((((((..(((....)))..))))).	chrX:119293072-119293347(+)$1	1	21	47	12.5864
(.(..(((.(....))))..).))))	chr1:8931911-8932145(-)$1	1	3	29	9.9697
(((((...(((....)))....))..	chr11:63970847-63971126(+)$1	1	172	198	12.5498
((...((((((....))))))...))	chr3:184042564-184042836(+)$1	1	42	68	10.1528
((((..(..(((...)))..)....)	chr8:144940627-144940884(-)$1	1	81	107	10.9576
..(((((.(((....))).)))))..	chr19:2199811-2200074(+)$1	1	83	109	11.6567
((((((.((((....))))..)))))	chr14:24679759-24680075(-)$1	1	177	203	11.3768
(.(((((.(((....)))))))).).	chr16:3779002-3779276(-)$1	1	198	224	11.2328
(((((((((((....)).))))))))	chr1:162560091-162560338(+)$1	1	162	188	11.8793
(((.(((.(((....))))))..)))	chr6:4892147-4892419(+)$1	1	148	174	11.8377
.((((((.(((....))).)))))).	chrX:24735426-24735704(+)$1	1	47	73	10.7081
((..((...(((...)))..)).)))	chr6:33258029-33258288(+)$1	1	127	153	9.9598
(((((((.(((....)))..))))))	chr12:25034133-25034419(-)$1	1	63	89	13.7945
((((((..(((....)))......))	chr1:52299633-52299854(-)$1	1	97	123	10.9910
((.(((.((((....)))))))))).	chr19:19605033-19605293(+)$1	1	197	223	10.2332
(((..(((.(((...))).)))....	chr17:42288556-42288795(-)$1	1	44	70	9.9944
((((((..(((....)))..))))))	chr1:38423689-38423982(-)$1	1	147	173	14.3043
(((((((((((....)))))))...)	chr17:65821702-65821959(+)$1	1	168	194	10.9278
((.(.(...((....)).).).))))	chr11:2990978-2991252(-)$1	1	148	174	12.0817
(((((.(..((....))..)))))))	chr9:136901069-136901479(-)$1	1	66	92	11.6432
(((((((((((....)))).))))))	chr19:47588541-47588774(-)$1	1	40	66	11.3726
((((((...((....))....)))))	chr12:104326018-104326258(+)$1	1	85	111	11.9971
((.((...(((....)))...)).))	chr5:176942088-176942304(-)$1	1	95	121	13.3770

#PSSM
f : 0.20	g : 0.18	e : 0.11	d : 0.09	= : 0.07	i : 0.05	: : 0.05	c : 0.05	[ : 0.03	a : 0.03	! : 0.03	" : 0.01	b : 0.01	
f : 0.26	g : 0.18	e : 0.13	= : 0.07	! : 0.07	[ : 0.07	i : 0.05	c : 0.05	" : 0.03	d : 0.03	
f : 0.22	g : 0.15	e : 0.15	[ : 0.09	= : 0.07	! : 0.07	i : 0.05	" : 0.05	c : 0.05	d : 0.03	a : 0.01	
f : 0.22	g : 0.13	e : 0.13	c : 0.11	! : 0.07	= : 0.05	a : 0.05	b : 0.05	i : 0.03	" : 0.03	d : 0.03	$ : 0.01	[ : 0.01	
f : 0.18	g : 0.16	! : 0.13	c : 0.11	[ : 0.09	b : 0.07	= : 0.05	e : 0.05	i : 0.03	$ : 0.01	d : 0.01	# : 0.01	" : 0.01	
f : 0.16	g : 0.16	! : 0.15	c : 0.13	= : 0.05	b : 0.05	a : 0.05	e : 0.05	i : 0.03	" : 0.03	$ : 0.01	d : 0.01	# : 0.01	[ : 0.01	
! : 0.22	g : 0.13	a : 0.09	" : 0.09	[ : 0.07	f : 0.07	c : 0.07	= : 0.05	e : 0.05	b : 0.03	i : 0.03	$ : 0.01	# : 0.01	
! : 0.24	[ : 0.24	d : 0.13	" : 0.09	g : 0.07	c : 0.05	= : 0.03	$ : 0.01	i : 0.01	a : 0.01	# : 0.01	e : 0.01	f : 0.01	
c : 0.50	d : 0.13	[ : 0.09	! : 0.07	g : 0.05	" : 0.05	i : 0.01	e : 0.01	f : 0.01	= : 0.01	
c : 0.56	b : 0.16	d : 0.13	g : 0.05	[ : 0.01	e : 0.01	a : 0.01	f : 0.01	
c : 0.56	b : 0.16	d : 0.13	g : 0.05	a : 0.01	e : 0.01	m : 0.01	f : 0.01	
m : 0.94	c : 0.05	
m : 0.94	l : 0.05	
m : 0.94	l : 0.05	
m : 0.92	l : 0.05	a : 0.01	
c : 0.58	b : 0.16	d : 0.13	g : 0.05	a : 0.01	e : 0.01	f : 0.01	
c : 0.58	b : 0.16	d : 0.13	g : 0.05	] : 0.01	e : 0.01	f : 0.01	
c : 0.60	d : 0.13	] : 0.07	g : 0.05	2 : 0.03	i : 0.01	3 : 0.01	e : 0.01	f : 0.01	4 : 0.01	
2 : 0.24	] : 0.22	d : 0.13	g : 0.07	4 : 0.07	= : 0.03	c : 0.03	a : 0.03	3 : 0.03	e : 0.03	i : 0.01	f : 0.01	6 : 0.01	
2 : 0.26	g : 0.11	f : 0.09	a : 0.09	c : 0.09	4 : 0.07	3 : 0.05	e : 0.05	] : 0.05	= : 0.03	b : 0.01	i : 0.01	6 : 0.01	
f : 0.16	g : 0.15	2 : 0.11	c : 0.09	4 : 0.07	a : 0.07	= : 0.05	b : 0.05	3 : 0.05	e : 0.05	i : 0.03	] : 0.01	d : 0.01	6 : 0.01	
f : 0.18	g : 0.18	2 : 0.09	c : 0.09	4 : 0.07	= : 0.05	b : 0.05	3 : 0.05	] : 0.05	e : 0.05	i : 0.03	d : 0.01	6 : 0.01	
f : 0.20	g : 0.15	= : 0.07	c : 0.07	e : 0.07	2 : 0.05	] : 0.05	d : 0.05	3 : 0.05	b : 0.05	a : 0.03	i : 0.03	4 : 0.03	6 : 0.01	
f : 0.22	g : 0.16	e : 0.09	c : 0.09	= : 0.07	2 : 0.05	4 : 0.05	d : 0.05	i : 0.03	b : 0.03	3 : 0.03	] : 0.03	6 : 0.01	
f : 0.26	g : 0.18	e : 0.09	= : 0.07	2 : 0.07	c : 0.07	4 : 0.05	] : 0.05	i : 0.03	d : 0.03	a : 0.01	3 : 0.01	
f : 0.18	g : 0.16	e : 0.13	2 : 0.09	d : 0.09	= : 0.07	: : 0.05	4 : 0.05	i : 0.03	c : 0.03	a : 0.01	b : 0.01	] : 0.01	

#score	625.3877442805642
#seq	53
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331VCF_SND1_transcript_m2_run2.txt

#BEAR
[cccwwwwwwwwwwwwwwcccddddcc	chr16:29871806-29872084(-)$1	278	76	103	21.0849
hhhhhhhuuuuuuuuuuuuhhhhhhhh	chr20:35842105-35842352(+)$1	247	190	217	20.0872
iii[bbuuuuuuuuuuuubb]iiiiii	chr18:57016244-57016534(-)$1	290	200	227	22.9455
bccc[bbtttttttttttbbccc22bb	chr16:31102365-31102654(-)$1	289	195	222	22.2322
b[ddddwwwwwwwwwwwwwwddddbb]	chr1:113460220-113460491(-)$1	271	38	65	20.9628
e[dddduuuuuuuuuuuuddddeeeee	chr11:9308009-9308239(-)$1	230	150	177	22.9134
ccc!!bbtttttttttttbb22cccDD	chr11:118925875-118926127(-)$1	252	70	97	20.8313
ffeeeeewwwwwwwwwwwwwweeeee:	chr3:128339245-128339490(-)$1	245	139	166	20.2063
=======uuuuuuuuuuuu========	chr11:64897496-64897734(-)$1	238	50	77	23.9974
ddddwwwwwwwwwwwwwwdddd333cc	chrX:47001908-47002191(-)$1	283	61	88	21.0902
iibb[bbtttttttttttbb]bb22ii	chr1:113460313-113460531(-)$1	218	53	80	21.6890
gggggvvvvvvvvvvvvvggggggg]c	chr1:160275123-160275343(-)$1	220	155	182	22.9331
ddddwwwwwwwwwwwwwwddddfffff	chr3:155547393-155547672(-)$1	279	57	84	20.7898
ffffffvvvvvvvvvvvvvffffff:E	chr13:113974645-113974888(+)$1	243	0	27	21.2564
::eeeeettttttttttteeeee:eee	chr15:79227217-79227450(-)$1	233	26	53	19.8561
eeee[bbtttttttttttbb]eeeee2	chr21:46888296-46888570(+)$1	274	161	188	22.6470
:ffffffvvvvvvvvvvvvvffffff:	chr6:33271999-33272225(-)$1	226	197	224	20.7528
dd[ddddtttttttttttdddd]dddd	chrM:15810-16016(+)$1	206	48	75	22.6617
f[dddduuuuuuuuuuuuddddfffff	chr1:100177568-100177802(-)$1	234	179	206	23.2132
cc[ddddtttttttttttdddd]ccc]	chr6:49583381-49583584(-)$1	203	138	165	23.5211
ffffffyyyyyyyyyyyyyyyyfffff	chr2:9728193-9728427(-)$1	234	5	32	21.4086
ffffffuuuuuuuuuuuuffffffDDD	chr7:56142177-56142430(+)$1	253	25	52	19.8597
ccddddvvvvvvvvvvvvvdddd333c	chr12:110765618-110765923(+)$1	305	165	192	23.3396
gggggggtttttttttttgggggggbb	chr21:46930003-46930255(+)$1	252	153	180	23.1126
c[eeeeeuuuuuuuuuuuueeeee444	chr3:41280597-41280910(+)$1	313	226	253	23.1548
cc[ddddtttttttttttdddd]ccc]	chr6:49583321-49583541(-)$1	220	95	122	23.5211
dfffffftttttttttttffffff333	chr11:9307938-9308205(-)$1	267	235	262	23.1294
gggggggtttttttttttggggggg22	chr2:47604052-47604295(+)$1	243	140	167	23.1779
$$$$ccctttttttttttcccccchhh	chr1:196642137-196642391(+)$1	254	48	75	21.8695
=======uuuuuuuuuuuu========	chr22:49920624-49920907(-)$1	283	148	175	23.9974
!ffffffuuuuuuuuuuuuffffff22	chr19:48887408-48887709(-)$1	301	202	229	22.8717
cc!!ccctttttttttttccc22ccc:	chrM:12053-12261(+)$1	208	155	182	22.7347
gggggggvvvvvvvvvvvvvggggggg	chrX:77126224-77126525(-)$1	301	242	269	22.9570
eeeewwwwwwwwwwwwwweeeee]ddd	chr12:112459852-112460067(+)$1	215	145	172	20.7803
fffffvvvvvvvvvvvvvffffffccc	chr1:165697155-165697440(-)$1	285	136	163	22.5509
!ffffffvvvvvvvvvvvvvffffffb	chr8:17924662-17924907(-)$1	245	117	144	22.4517
ccc!!avvvvvvvvvvvvva22ccc]g	chr3:195785348-195785584(-)$1	236	97	124	23.1689
eee!!bbtttttttttttbb4444eee	chr12:104340317-104340570(+)$1	253	142	169	22.7002
cceeeeettttttttttteeeee]ccc	chr11:125479228-125479485(+)$1	257	94	121	23.4440
ffffffyyyyyyyyyyyyyyyyfffff	chr12:51323597-51323845(+)$1	248	143	170	21.4086
hffffffyyyyyyyyyyyyyyyyffff	chr8:17918808-17919067(-)$1	259	214	241	20.3522
ggeeeeevvvvvvvvvvvvveeeee>>	chrX:119589112-119589426(-)$1	314	158	185	22.2132
f!!dddduuuuuuuuuuuudddd333f	chr7:120876686-120876922(+)$1	236	36	63	23.4468
ffffffyyyyyyyyyyyyyyyyfffff	chr18:28654593-28654869(-)$1	276	83	110	21.4086
f[cccbbtttttttttttbb]cccfff	chr3:141632519-141632773(+)$1	254	161	188	23.0605
=======ttttttttttt=========	chr17:16285248-16285463(+)$1	215	138	165	24.0180
g!!dddduuuuuuuuuuuudddd]ggg	chr9:136232784-136233003(-)$1	219	62	89	23.4835
ff[ddddtttttttttttdddd]ffff	chr3:195778825-195779061(-)$1	236	5	32	23.3840
eeeeevvvvvvvvvvvvveeeee22dd	chr3:51426288-51426548(+)$1	260	185	212	22.0058
ffffffyyyyyyyyyyyyyyyyfffff	chr1:65895573-65895833(+)$1	260	157	184	21.4086
[fffffftttttttttttffffff]ee	chr15:66170110-66170387(+)$1	277	190	217	23.0302
bb!!ccctttttttttttccc22bb22	chr9:35060779-35061020(-)$1	241	116	143	22.0365
gggggggtttttttttttggggggg]b	chr11:75282776-75283034(+)$1	258	84	111	23.3655
ddddwwwwwwwwwwwwwwdddddddd[	chr9:139757265-139757519(-)$1	254	59	86	20.1903
eeeeevvvvvvvvvvvvveeeee]ddd	chr5:10417298-10417542(+)$1	244	214	241	22.3113
c[a[cccuuuuuuuuuuuuccca]ccc	chr6:109690109-109690321(-)$1	212	33	60	23.8562
eeddddvvvvvvvvvvvvvdddd]eee	chrX:153247773-153248128(+)$1	355	17	44	22.8125
"cccwwwwwwwwwwwwwwccc333eee	chr19:11230968-11231294(+)$1	326	150	177	21.1933
=======yyyyyyyyyyyyyyyy====	chr11:14535848-14536114(-)$1	266	49	76	21.0604
#ddddwwwwwwwwwwwwwwdddddddd	chrX:77112761-77113021(-)$1	260	206	233	21.0724

#otherMatches

#Seq PSSM
UGGGUUCCCCUGUUUUCUCCCCAAGUU	chr16:29871806-29872084(-)$1	278	76	103	21.0849
CCAUGUUAGUAUAUCCAAGGAUAUGGC	chr20:35842105-35842352(+)$1	247	190	217	20.0872
CAGUCUGAUGAUAUUAAAAGUUUGUGA	chr18:57016244-57016534(-)$1	290	200	227	22.9455
ACUGAGCCCUCAACCCAAGCCAGGCUG	chr16:31102365-31102654(-)$1	289	195	222	22.2322
GAGCCCUCAUGCGACCAAUCGGGCCCA	chr1:113460220-113460491(-)$1	271	38	65	20.9628
ACACCAUUUCUGCCUAAUUGGUUUAUU	chr11:9308009-9308239(-)$1	230	150	177	22.9134
CCUCAGGCGAUUAAGAAUCCAAAGGCU	chr11:118925875-118926127(-)$1	252	70	97	20.8313
AGCUCAAGAAAGACACGUACAUUGAGA	chr3:128339245-128339490(-)$1	245	139	166	20.2063
GGAUGGAACACUCACUGACUUCGUUCC	chr11:64897496-64897734(-)$1	238	50	77	23.9974
AUGGUUAUGACAAGGACCCCGUUUUGG	chrX:47001908-47002191(-)$1	283	61	88	21.0902
UUGCUACUAAACUGCUGUGUUGCUGGA	chr1:113460313-113460531(-)$1	218	53	80	21.6890
GACAGCUUCCUGAAAUCACUGUCUUGU	chr1:160275123-160275343(-)$1	220	155	182	22.9331
CAUGACCCUUUUAAAUACCGUGUCCAA	chr3:155547393-155547672(-)$1	279	57	84	20.7898
CUUGUCUUAUGCAGACGGUGACAAGGC	chr13:113974645-113974888(+)$1	243	0	27	21.2564
AAUUGCUCAGCCACCAAAAGUAACUAC	chr15:79227217-79227450(-)$1	233	26	53	19.8561
CUGCUCUACACAGAACCAGGUGCAGGC	chr21:46888296-46888570(+)$1	274	161	188	22.6470
ACAGGAGCUCACUCUCACCCCUUCUGC	chr6:33271999-33272225(-)$1	226	197	224	20.7528
UAAUUGAAAACAAAAUACUCAAAUGGG	chrM:15810-16016(+)$1	206	48	75	22.6617
CUAGCUGCUUAUAUUACAAGUUGUAAU	chr1:100177568-100177802(-)$1	234	179	206	23.2132
UGGGGCCUACUUUGGCUUGGCUGUAGC	chr6:49583381-49583584(-)$1	203	138	165	23.5211
GCAUUUGAUAUAAGCAAGAAAGAGAUG	chr2:9728193-9728427(-)$1	234	5	32	21.4086
GCGGGCGCCCUAAACCUAGCCUGCCUC	chr7:56142177-56142430(+)$1	253	25	52	19.8597
ACUGGUACACUUACAACAAACCAGAUG	chr12:110765618-110765923(+)$1	305	165	192	23.3396
GCCCAUCGUCAACCUCAAGGUGGGUCA	chr21:46930003-46930255(+)$1	252	153	180	23.1126
UGACCUGUAAAUCAUCCUUUAGGUAAG	chr3:41280597-41280910(+)$1	313	226	253	23.1548
UGGGGCCUACUUUGGCUUGGCUGUAGC	chr6:49583321-49583541(-)$1	220	95	122	23.5211
UCACUGUGUACAUAUCUAACAGUGUCC	chr11:9307938-9308205(-)$1	267	235	262	23.1294
CCAAAAUUUAUCACGAGUAUUUUGGUA	chr2:47604052-47604295(+)$1	243	140	167	23.1779
CCCAGGCUAUCUAUAAAUGCCGCCCUG	chr1:196642137-196642391(+)$1	254	48	75	21.8695
ugcauguuuguguguuugugcgugCAC	chr22:49920624-49920907(-)$1	283	148	175	23.9974
UCUACCUCUAUAUCACCAAAGGUAGCU	chr19:48887408-48887709(-)$1	301	202	229	22.8717
AGAAAGCUCACAAGAACUGCUAACUCA	chrM:12053-12261(+)$1	208	155	182	22.7347
GCUAUAUAAAAAUAGGUAAAAUAUAGU	chrX:77126224-77126525(-)$1	301	242	269	22.9570
CUGGACAAAGAGAGCUACCCAGUCUUC	chr12:112459852-112460067(+)$1	215	145	172	20.7803
GGUGGAUUUCUUGGCCCACCACCUCCU	chr1:165697155-165697440(-)$1	285	136	163	22.5509
CUUUCCUGGCCCUUUUGAAGAGGAAAU	chr8:17924662-17924907(-)$1	245	117	144	22.4517
CUGGGCAAUUUCUAUAUCAGGACAGCA	chr3:195785348-195785584(-)$1	236	97	124	23.1689
CUUCGACGAAUUAAGGUAGUAUUAAAG	chr12:104340317-104340570(+)$1	253	142	169	22.7002
UGCUAGGAAAAAUAUCUCCCUGGACGG	chr11:125479228-125479485(+)$1	257	94	121	23.4440
GACUUGGAAUUACUUCUGGCAACAAGU	chr12:51323597-51323845(+)$1	248	143	170	21.4086
uuauuuuaaauuacucauauuaaaaaa	chr8:17918808-17919067(-)$1	259	214	241	20.3522
UCUCAUUUUCCUACAACACUGGUGAUA	chrX:119589112-119589426(-)$1	314	158	185	22.2132
UCAAGUUAAUUAAUACAACAACUAAUA	chr7:120876686-120876922(+)$1	236	36	63	23.4468
UCUGCAAACCCACCAUGUCAUCUGCGG	chr18:28654593-28654869(-)$1	276	83	110	21.4086
ACGUACAUAUUUUACCUCUGCUGCUGC	chr3:141632519-141632773(+)$1	254	161	188	23.0605
CUUUCUGACUACAACAUCCAGAAGGAG	chr17:16285248-16285463(+)$1	215	138	165	24.0180
GCUGAGACUCAAGUAUCUCUCUCUUCU	chr9:136232784-136233003(-)$1	219	62	89	23.4835
GGUGGAGUAUCACUUCCUCUCUCCCUA	chr3:195778825-195779061(-)$1	236	5	32	23.3840
UGCCUAAAUAUGCCCCCAAGGCAGCCA	chr3:51426288-51426548(+)$1	260	185	212	22.0058
GGUAAGUUUUAUUUUCUAUUGUUUUGC	chr1:65895573-65895833(+)$1	260	157	184	21.4086
AUAGGAAUUCCAUGAUAUUUCUUACCA	chr15:66170110-66170387(+)$1	277	190	217	23.0302
GUAACCCAUCAGCACUGCGGGAAACCG	chr9:35060779-35061020(-)$1	241	116	143	22.0365
UGACAAGAACAAGGCCGACUUGUCACG	chr11:75282776-75283034(+)$1	258	84	111	23.3655
UCUCUUUAGAAAAUCAAUGAGAAGCCA	chr9:139757265-139757519(-)$1	254	59	86	20.1903
GCAGGUAAAUGUAUGUCUUUUGCUCAU	chr5:10417298-10417542(+)$1	244	214	241	22.3113
UGCAUCUUUAAAUUACAAUAGAGGACC	chr6:109690109-109690321(-)$1	212	33	60	23.8562
CCCUGCUCUAUGGCCCCGUGCAGUGGC	chrX:153247773-153248128(+)$1	355	17	44	22.8125
CAACCCCCACUCGCCCAAGUUUACCUG	chr19:11230968-11231294(+)$1	326	150	177	21.1933
UACUAAACUUUUUUUGUUUCUUUUUUA	chr11:14535848-14536114(-)$1	266	49	76	21.0604
AUCCCCUUUGAAUCUUACUGGGAGGCC	chrX:77112761-77113021(-)$1	260	206	233	21.0724

#DB
.(((..............)))))))))	chr16:29871806-29872084(-)$1	1	76	103	21.0849
(((((((............))))))))	chr20:35842105-35842352(+)$1	1	190	217	20.0872
(((.((............)).))))))	chr18:57016244-57016534(-)$1	1	200	227	22.9455
((((.((...........)))))..))	chr16:31102365-31102654(-)$1	1	195	222	22.2322
(.((((..............)))))).	chr1:113460220-113460491(-)$1	1	38	65	20.9628
(.((((............)))))))))	chr11:9308009-9308239(-)$1	1	150	177	22.9134
(((..((...........))..)))))	chr11:118925875-118926127(-)$1	1	70	97	20.8313
))(((((..............))))).	chr3:128339245-128339490(-)$1	1	139	166	20.2063
(((((((............))))))))	chr11:64897496-64897734(-)$1	1	50	77	23.9974
((((..............))))...))	chrX:47001908-47002191(-)$1	1	61	88	21.0902
((((.((...........)).))..))	chr1:113460313-113460531(-)$1	1	53	80	21.6890
(((((.............))))))).)	chr1:160275123-160275343(-)$1	1	155	182	22.9331
((((..............)))))))))	chr3:155547393-155547672(-)$1	1	57	84	20.7898
((((((.............)))))).(	chr13:113974645-113974888(+)$1	1	0	27	21.2564
..(((((...........))))).(((	chr15:79227217-79227450(-)$1	1	26	53	19.8561
((((.((...........)).))))).	chr21:46888296-46888570(+)$1	1	161	188	22.6470
.((((((.............)))))).	chr6:33271999-33272225(-)$1	1	197	224	20.7528
((.((((...........)))).))))	chrM:15810-16016(+)$1	1	48	75	22.6617
(.((((............)))))))))	chr1:100177568-100177802(-)$1	1	179	206	23.2132
((.((((...........)))).))).	chr6:49583381-49583584(-)$1	1	138	165	23.5211
((((((................)))))	chr2:9728193-9728427(-)$1	1	5	32	21.4086
((((((............))))))(((	chr7:56142177-56142430(+)$1	1	25	52	19.8597
((((((.............))))...)	chr12:110765618-110765923(+)$1	1	165	192	23.3396
(((((((...........)))))))((	chr21:46930003-46930255(+)$1	1	153	180	23.1126
(.(((((............)))))...	chr3:41280597-41280910(+)$1	1	226	253	23.1548
((.((((...........)))).))).	chr6:49583321-49583541(-)$1	1	95	122	23.5211
(((((((...........))))))...	chr11:9307938-9308205(-)$1	1	235	262	23.1294
(((((((...........)))))))..	chr2:47604052-47604295(+)$1	1	140	167	23.1779
....(((...........)))))))))	chr1:196642137-196642391(+)$1	1	48	75	21.8695
(((((((............))))))))	chr22:49920624-49920907(-)$1	1	148	175	23.9974
.((((((............))))))..	chr19:48887408-48887709(-)$1	1	202	229	22.8717
((..(((...........)))..))).	chrM:12053-12261(+)$1	1	155	182	22.7347
(((((((.............)))))))	chrX:77126224-77126525(-)$1	1	242	269	22.9570
((((..............))))).)))	chr12:112459852-112460067(+)$1	1	145	172	20.7803
(((((.............)))))))))	chr1:165697155-165697440(-)$1	1	136	163	22.5509
.((((((.............)))))))	chr8:17924662-17924907(-)$1	1	117	144	22.4517
(((..(.............)..))).)	chr3:195785348-195785584(-)$1	1	97	124	23.1689
(((..((...........))....)))	chr12:104340317-104340570(+)$1	1	142	169	22.7002
(((((((...........))))).)))	chr11:125479228-125479485(+)$1	1	94	121	23.4440
((((((................)))))	chr12:51323597-51323845(+)$1	1	143	170	21.4086
(((((((................))))	chr8:17918808-17919067(-)$1	1	214	241	20.3522
(((((((.............)))))..	chrX:119589112-119589426(-)$1	1	158	185	22.2132
(..((((............))))...)	chr7:120876686-120876922(+)$1	1	36	63	23.4468
((((((................)))))	chr18:28654593-28654869(-)$1	1	83	110	21.4086
(.(((((...........)).))))))	chr3:141632519-141632773(+)$1	1	161	188	23.0605
(((((((...........)))))))))	chr17:16285248-16285463(+)$1	1	138	165	24.0180
(..((((............)))).)))	chr9:136232784-136233003(-)$1	1	62	89	23.4835
((.((((...........)))).))))	chr3:195778825-195779061(-)$1	1	5	32	23.3840
(((((.............)))))..))	chr3:51426288-51426548(+)$1	1	185	212	22.0058
((((((................)))))	chr1:65895573-65895833(+)$1	1	157	184	21.4086
.((((((...........)))))).))	chr15:66170110-66170387(+)$1	1	190	217	23.0302
((..(((...........)))..))..	chr9:35060779-35061020(-)$1	1	116	143	22.0365
(((((((...........))))))).)	chr11:75282776-75283034(+)$1	1	84	111	23.3655
((((..............))))((((.	chr9:139757265-139757519(-)$1	1	59	86	20.1903
(((((.............))))).)))	chr5:10417298-10417542(+)$1	1	214	241	22.3113
(.(.(((............)))).)))	chr6:109690109-109690321(-)$1	1	33	60	23.8562
((((((.............)))).)))	chrX:153247773-153248128(+)$1	1	17	44	22.8125
.(((..............)))...)))	chr19:11230968-11231294(+)$1	1	150	177	21.1933
(((((((................))))	chr11:14535848-14536114(-)$1	1	49	76	21.0604
.((((..............))))))))	chrX:77112761-77113021(-)$1	1	206	233	21.0724

#PSSM
f : 0.19	c : 0.15	e : 0.11	g : 0.11	d : 0.08	= : 0.06	b : 0.05	[ : 0.03	h : 0.03	i : 0.03	: : 0.03	! : 0.03	$ : 0.01	" : 0.01	# : 0.01	
f : 0.24	c : 0.16	[ : 0.09	g : 0.09	e : 0.09	d : 0.08	= : 0.06	i : 0.03	! : 0.03	h : 0.01	: : 0.01	$ : 0.01	b : 0.01	
f : 0.21	e : 0.16	d : 0.15	c : 0.09	g : 0.08	= : 0.06	[ : 0.06	! : 0.06	h : 0.01	i : 0.01	b : 0.01	$ : 0.01	a : 0.01	
d : 0.24	f : 0.21	e : 0.15	! : 0.08	g : 0.08	c : 0.06	= : 0.06	[ : 0.03	h : 0.01	b : 0.01	$ : 0.01	
f : 0.21	d : 0.19	e : 0.11	w : 0.09	g : 0.08	c : 0.08	= : 0.06	[ : 0.05	! : 0.05	h : 0.01	b : 0.01	
f : 0.19	d : 0.18	w : 0.11	b : 0.11	e : 0.08	= : 0.06	v : 0.06	g : 0.06	c : 0.06	h : 0.01	a : 0.01	
w : 0.13	v : 0.13	b : 0.09	f : 0.09	d : 0.09	e : 0.08	u : 0.06	= : 0.06	y : 0.06	g : 0.06	c : 0.06	h : 0.01	
t : 0.35	u : 0.19	v : 0.19	w : 0.15	y : 0.09	
t : 0.35	u : 0.19	v : 0.19	w : 0.15	y : 0.09	
t : 0.35	u : 0.19	v : 0.19	w : 0.15	y : 0.09	
t : 0.35	u : 0.19	v : 0.19	w : 0.15	y : 0.09	
t : 0.35	u : 0.19	v : 0.19	w : 0.15	y : 0.09	
t : 0.35	u : 0.19	v : 0.19	w : 0.15	y : 0.09	
t : 0.35	u : 0.19	v : 0.19	w : 0.15	y : 0.09	
t : 0.35	u : 0.19	v : 0.19	w : 0.15	y : 0.09	
t : 0.35	u : 0.19	v : 0.19	w : 0.15	y : 0.09	
t : 0.35	u : 0.19	v : 0.19	w : 0.15	y : 0.09	
t : 0.35	u : 0.19	v : 0.19	w : 0.15	y : 0.09	
d : 0.15	u : 0.13	v : 0.13	b : 0.11	y : 0.09	c : 0.08	e : 0.08	g : 0.06	f : 0.06	w : 0.05	= : 0.01	
d : 0.23	b : 0.11	c : 0.09	f : 0.09	e : 0.09	y : 0.09	g : 0.06	v : 0.06	= : 0.05	w : 0.03	h : 0.01	a : 0.01	
d : 0.24	f : 0.13	c : 0.11	e : 0.11	y : 0.09	g : 0.08	] : 0.06	= : 0.05	2 : 0.03	h : 0.01	w : 0.01	4 : 0.01	
d : 0.26	e : 0.15	f : 0.13	y : 0.09	g : 0.08	c : 0.06	2 : 0.06	= : 0.05	h : 0.01	i : 0.01	b : 0.01	4 : 0.01	3 : 0.01	
f : 0.23	e : 0.16	d : 0.13	c : 0.08	g : 0.08	] : 0.06	= : 0.05	3 : 0.03	2 : 0.03	y : 0.03	h : 0.01	i : 0.01	b : 0.01	4 : 0.01	a : 0.01	
f : 0.26	c : 0.11	] : 0.09	d : 0.08	e : 0.08	g : 0.08	= : 0.06	3 : 0.06	2 : 0.05	h : 0.01	i : 0.01	: : 0.01	4 : 0.01	b : 0.01	
f : 0.21	e : 0.13	c : 0.13	d : 0.09	g : 0.09	= : 0.06	3 : 0.06	2 : 0.05	h : 0.03	b : 0.03	i : 0.01	D : 0.01	4 : 0.01	] : 0.01	
f : 0.18	c : 0.13	e : 0.13	d : 0.09	= : 0.06	b : 0.05	] : 0.05	3 : 0.05	2 : 0.05	h : 0.03	i : 0.03	D : 0.03	g : 0.03	: : 0.01	4 : 0.01	> : 0.01	
f : 0.16	c : 0.11	e : 0.09	d : 0.08	b : 0.06	= : 0.06	2 : 0.06	] : 0.05	: : 0.05	g : 0.05	h : 0.03	i : 0.03	D : 0.03	E : 0.01	4 : 0.01	3 : 0.01	> : 0.01	[ : 0.01	

#score	1333.0229910789049
#seq	60
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF431FMQ_PCBP1_transcript_m2_run2.txt

#BEAR
ggddddtttttttttttdddd3	chr6:31597271-31597562(+)$1	291	132	154	21.9086
fffffwwwwwwwwwwwwwwfff	chr22:30732987-30733271(-)$1	284	79	101	22.2216
ggggggtttttttttttggggg	chr6:30691239-30691483(+)$1	244	168	190	22.3762
fffffwwwwwwwwwwwwwwfff	chr19:56206817-56207099(+)$1	282	2	24	22.2216
dd[bbwwwwwwwwwwwwwwbb]	chr16:89974688-89974991(+)$1	303	194	216	21.2401
======ttttttttttt=====	chr11:64532864-64533126(-)$1	262	32	54	22.4400
eeeeeuuuuuuuuuuuueeeee	chr1:160248465-160248777(-)$1	312	196	218	23.1547
hh[bbuuuuuuuuuuuubb]hh	chr12:56716434-56716744(-)$1	310	245	267	21.7700
ggggguuuuuuuuuuuuggggg	chr19:15354032-15354369(-)$1	337	58	80	23.7202
iiiiivvvvvvvvvvvvviiii	chr16:30368915-30369165(-)$1	250	120	142	23.8895
"dddduuuuuuuuuuuudddd3	chr19:15353693-15354044(-)$1	351	314	336	23.0173
iiiiivvvvvvvvvvvvviiii	chr11:64532553-64532809(-)$1	256	195	217	23.8895
dddddwwwwwwwwwwwwwwddd	chr1:228336451-228336711(+)$1	260	132	154	21.8799
dd[bbwwwwwwwwwwwwwwbb2	chr7:150034634-150034986(+)$1	352	75	97	20.9623
eeeeeuuuuuuuuuuuueeeee	chr7:100212768-100213041(+)$1	273	57	79	23.1547
gggggvvvvvvvvvvvvvgggg	chr19:34890939-34891232(+)$1	293	206	228	24.0920
gggggwwwwwwwwwwwwwwggg	chr22:38062100-38062376(+)$1	276	19	41	22.7910
=====uuuuuuuuuuuu=====	chr4:1309442-1309760(+)$1	318	151	173	23.7512
fffffvvvvvvvvvvvvvffff	chr19:41270971-41271311(+)$1	340	140	162	23.4557
ggggggtttttttttttggggg	chr19:50154058-50154355(+)$1	297	100	122	22.3762
!!cccvvvvvvvvvvvvvccc2	chr17:41167589-41167878(-)$1	289	118	140	23.4860
[dddduuuuuuuuuuuudddd]	chr22:19754385-19754674(+)$1	289	121	143	23.2706
fffffuuuuuuuuuuuufffff	chr11:5290798-5291006(-)$1	208	125	147	23.0895
fffffftttttttttttfffff	chr4:83763256-83763562(-)$1	306	45	67	21.8757
cccccctttttttttttccc]c	chr1:54678071-54678343(+)$1	272	109	131	22.0849
=====uuuuuuuuuuuu=====	chr4:1309578-1309843(+)$1	265	15	37	23.7512
fffffuuuuuuuuuuuufffff	chr1:16263874-16264167(+)$1	293	88	110	23.0895
ggggggtttttttttttggggg	chr22:41545975-41546289(+)$1	314	99	121	22.3762
[ddddvvvvvvvvvvvvvdddd	chr19:36212055-36212342(+)$1	287	43	65	23.4104
edddduuuuuuuuuuuudddd:	chr16:88799311-88799574(-)$1	263	185	207	21.9819
dddbbuuuuuuuuuuuubb]dd	chr8:57873427-57873744(-)$1	317	138	160	22.0161
ggggggtttttttttttggggg	chr1:149858481-149858733(+)$1	252	202	224	22.3762
[dddduuuuuuuuuuuudddd]	chrX:153626737-153626939(+)$1	202	76	98	23.2706
fffffftttttttttttfffff	chr18:19321363-19321621(+)$1	258	100	122	21.8757
fffffuuuuuuuuuuuufffff	chr19:56125134-56125518(+)$1	384	267	289	23.0895
gggggyyyyyyyyyyyyyyyyg	chr1:8420959-8421266(-)$1	307	80	102	20.0744
eeeeewwwwwwwwwwwwwweee	chr4:119738329-119738602(-)$1	273	112	134	22.2990
hhhhhvvvvvvvvvvvvvhhhh	chr17:47794839-47795099(-)$1	260	18	40	22.1377
eeeeevvvvvvvvvvvvveeee	chr5:126860233-126860581(+)$1	348	10	32	23.5514
Fdddduuuuuuuuuuuuddddb	chr6:33218199-33218460(-)$1	261	144	166	22.4021
:ddddvvvvvvvvvvvvvdddd	chr12:54745070-54745364(+)$1	294	118	140	22.2332
eeeeeuuuuuuuuuuuueeeee	chr17:42397108-42397343(-)$1	235	173	195	23.1547
eeeeewwwwwwwwwwwwwweee	chr10:75157952-75158245(-)$1	293	3	25	22.2990
fffffftttttttttttfffff	chr11:119205552-119205839(+)$1	287	26	48	21.8757
gggggvvvvvvvvvvvvvgggg	chr5:179227429-179227689(-)$1	260	230	252	24.0920
eeeeevvvvvvvvvvvvveeee	chr7:75053304-75053570(-)$1	266	83	105	23.5514
dddwwwwwwwwwwwwwwdddd]	chr19:36211853-36212122(+)$1	269	157	179	20.8385
gggggyyyyyyyyyyyyyyyyg	chr3:129034753-129035066(-)$1	313	121	143	20.0744
!!cccvvvvvvvvvvvvvcccd	chr7:150730620-150730939(+)$1	319	225	247	23.5207
fffffuuuuuuuuuuuufffff	chr16:684984-685245(-)$1	261	44	66	23.0895
[dddduuuuuuuuuuuuddddf	chr7:29923560-29923921(+)$1	361	194	216	23.1781
fffffwwwwwwwwwwwwwwfff	chr17:36413124-36413439(-)$1	315	215	237	22.2216
fffffftttttttttttfffff	chr12:53846029-53846261(+)$1	232	200	222	21.8757
:eeeeettttttttttteeeee	chr19:54969849-54970153(+)$1	304	93	115	20.8679
ggggguuuuuuuuuuuuggggg	chr19:40487113-40487378(+)$1	265	133	155	23.7202
=====uuuuuuuuuuuu=====	chr17:7215371-7215637(+)$1	266	232	254	23.7512
a[cccuuuuuuuuuuuuccc]a	chrX:153589996-153590245(-)$1	249	196	218	23.1440
:dddduuuuuuuuuuuudddd:	chrX:55033823-55034078(+)$1	255	166	188	20.9553
"ddddwwwwwwwwwwwwwwddd	chr3:9860541-9860801(+)$1	260	71	93	21.9964
hhhhhvvvvvvvvvvvvvhhhh	chr19:2039501-2039765(-)$1	264	138	160	22.1377
[dddduuuuuuuuuuuudddd]	chr17:79801187-79801460(-)$1	273	247	269	23.2706
eeeeevvvvvvvvvvvvveeee	chr11:64534334-64534597(-)$1	263	51	73	23.5514

#otherMatches

#Seq PSSM
CAUCACCACCACAGCCUGUGAC	chr6:31597271-31597562(+)$1	291	132	154	21.9086
GCUGCUUAUUCUUGUCUUUGCA	chr22:30732987-30733271(-)$1	284	79	101	22.2216
AUCAGUUGGUAGAGAAUACUGA	chr6:30691239-30691483(+)$1	244	168	190	22.3762
CCCAGUGCCCUUCCCCUUCCUG	chr19:56206817-56207099(+)$1	282	2	24	22.2216
GCCAGCUCCCACCUCUUUCCUC	chr16:89974688-89974991(+)$1	303	194	216	21.2401
CGCCAGCUUGGGCUCUCCUGGC	chr11:64532864-64533126(-)$1	262	32	54	22.4400
GUUUAUCCCAACCUUUUUGAGC	chr1:160248465-160248777(-)$1	312	196	218	23.1547
AUGACCUGAUGGCUACUGUGGU	chr12:56716434-56716744(-)$1	310	245	267	21.7700
UGUGUUCUUCCAGCUUUGCACA	chr19:15354032-15354369(-)$1	337	58	80	23.7202
GGGGUCUCUGUCGCUCCUGCCC	chr16:30368915-30369165(-)$1	250	120	142	23.8895
GUCGGACCCCUACUCAACCGGU	chr19:15353693-15354044(-)$1	351	314	336	23.0173
UGUGGGUUUUUCAAGGUGCCAU	chr11:64532553-64532809(-)$1	256	195	217	23.8895
UGUCCCUAUCUCUCACUCUGGA	chr1:228336451-228336711(+)$1	260	132	154	21.8799
ACCUCUUCCUUCGUCUUCUGAA	chr7:150034634-150034986(+)$1	352	75	97	20.9623
GCCCACCCCACCCUCCCUGGGC	chr7:100212768-100213041(+)$1	273	57	79	23.1547
GGCUGAAGUGUUUUUGUGCAGC	chr19:34890939-34891232(+)$1	293	206	228	24.0920
GUGGCCUUAUUUCUUCCCUGUC	chr22:38062100-38062376(+)$1	276	19	41	22.7910
GCGUGUCCCCCUCCCCCCAUGU	chr4:1309442-1309760(+)$1	318	151	173	23.7512
GGCCACCCCUUUCCCCCUUGGC	chr19:41270971-41271311(+)$1	340	140	162	23.4557
UGCCCGUCACCUCACCUUGGGC	chr19:50154058-50154355(+)$1	297	100	122	22.3762
UUGUGUUCCAUGUGCUUUCACC	chr17:41167589-41167878(-)$1	289	118	140	23.4860
CGGCUCUCCCCUUCCCCAGCCU	chr22:19754385-19754674(+)$1	289	121	143	23.2706
CAGAGAUUUUUUGACAGCUUUG	chr11:5290798-5291006(-)$1	208	125	147	23.0895
CUGCUUCUUCCUAUACUGGGCA	chr4:83763256-83763562(-)$1	306	45	67	21.8757
GGAAGGCUAUCCUUACCCCUAU	chr1:54678071-54678343(+)$1	272	109	131	22.0849
GCGUGUCCCCCUCCCCCCAUGU	chr4:1309578-1309843(+)$1	265	15	37	23.7512
AGUCUCUCUUCCCACUCAGACU	chr1:16263874-16264167(+)$1	293	88	110	23.0895
UGCAGCCUUCACUUCCUGCUGC	chr22:41545975-41546289(+)$1	314	99	121	22.3762
AGCUGcccccuccucccccagc	chr19:36212055-36212342(+)$1	287	43	65	23.4104
UGGGACCUUCUCGCACAUCCCU	chr16:88799311-88799574(-)$1	263	185	207	21.9819
UGACCAUUUCCCUUACCGGUUC	chr8:57873427-57873744(-)$1	317	138	160	22.0161
GCGGUCCUCGAGUACCUGACCG	chr1:149858481-149858733(+)$1	252	202	224	22.3762
CCGACUCUCUCUUUUUCGUUGC	chrX:153626737-153626939(+)$1	202	76	98	23.2706
GGGCCCAACUCCCUCACGGGCC	chr18:19321363-19321621(+)$1	258	100	122	21.8757
GCUGCUUUCCCCACUCCGCAGU	chr19:56125134-56125518(+)$1	384	267	289	23.0895
CUGUUCCCCACACCCACAUCCA	chr1:8420959-8421266(-)$1	307	80	102	20.0744
CAGGUCCUAUAUCCACUUCAUC	chr4:119738329-119738602(-)$1	273	112	134	22.2990
GUUAGAUCCUUGAUAUCCCUGA	chr17:47794839-47795099(-)$1	260	18	40	22.1377
CUCCAAAUGUAUCCUCCAUGGA	chr5:126860233-126860581(+)$1	348	10	32	23.5514
UGUUUCUUCCCCUGUAAAAACC	chr6:33218199-33218460(-)$1	261	144	166	22.4021
CUGUCCCCUCAGCUCCCCGACA	chr12:54745070-54745364(+)$1	294	118	140	22.2332
GUGGGGAUCAUCACUUACCCAC	chr17:42397108-42397343(-)$1	235	173	195	23.1547
GAGGUAGACCUUAAUAAUAACC	chr10:75157952-75158245(-)$1	293	3	25	22.2990
GUUUGGCCUCUUCCCUCCCAAA	chr11:119205552-119205839(+)$1	287	26	48	21.8757
CAGCAACCCGCCUGCCUGUGCU	chr5:179227429-179227689(-)$1	260	230	252	24.0920
CUGAGACCCCACCUACCACUCA	chr7:75053304-75053570(-)$1	266	83	105	23.5514
ACUCCUCCAUCUACCCCAGUUC	chr19:36211853-36212122(+)$1	269	157	179	20.8385
gggccccccaacccucgcuccg	chr3:129034753-129035066(-)$1	313	121	143	20.0744
CUGAGUAAGCAUCCCCACCUCU	chr7:150730620-150730939(+)$1	319	225	247	23.5207
UGGGCUCCCUGCCCCCCGCCCA	chr16:684984-685245(-)$1	261	44	66	23.0895
UGCACcccccguccccugugcg	chr7:29923560-29923921(+)$1	361	194	216	23.1781
GGUCUCUCCCCCGCCCCCCAGG	chr17:36413124-36413439(-)$1	315	215	237	22.2216
GGCUCGGGUCCUAGUCACGAGC	chr12:53846029-53846261(+)$1	232	200	222	21.8757
CUGGGGCCUCUUCUCCACCCCA	chr19:54969849-54970153(+)$1	304	93	115	20.8679
UGGGGCUUCUCUCGCACCCCCA	chr19:40487113-40487378(+)$1	265	133	155	23.7202
CCCCAAACCCCUUUAGAUgggg	chr17:7215371-7215637(+)$1	266	232	254	23.7512
GCCUGGGAGAGAGUAAGUAGUU	chrX:153589996-153590245(-)$1	249	196	218	23.1440
UAAGCCCUCUCUUCCUCGCUUU	chrX:55033823-55034078(+)$1	255	166	188	20.9553
UGUGGUUACCUccacucuccca	chr3:9860541-9860801(+)$1	260	71	93	21.9964
GGGAGACCACGCCUGACCCUCC	chr19:2039501-2039765(-)$1	264	138	160	22.1377
UGGCCUCUCUACAGCACGGCCU	chr17:79801187-79801460(-)$1	273	247	269	23.2706
AUGCCGCCACCACCUAUGGGCA	chr11:64534334-64534597(-)$1	263	51	73	23.5514

#DB
((((((...........)))).	chr6:31597271-31597562(+)$1	1	132	154	21.9086
(((((..............)))	chr22:30732987-30733271(-)$1	1	79	101	22.2216
((((((...........)))))	chr6:30691239-30691483(+)$1	1	168	190	22.3762
(((((..............)))	chr19:56206817-56207099(+)$1	1	2	24	22.2216
((.((..............)).	chr16:89974688-89974991(+)$1	1	194	216	21.2401
((((((...........)))))	chr11:64532864-64533126(-)$1	1	32	54	22.4400
(((((............)))))	chr1:160248465-160248777(-)$1	1	196	218	23.1547
((.((............)).))	chr12:56716434-56716744(-)$1	1	245	267	21.7700
(((((............)))))	chr19:15354032-15354369(-)$1	1	58	80	23.7202
(((((.............))))	chr16:30368915-30369165(-)$1	1	120	142	23.8895
.((((............)))).	chr19:15353693-15354044(-)$1	1	314	336	23.0173
(((((.............))))	chr11:64532553-64532809(-)$1	1	195	217	23.8895
(((((..............)))	chr1:228336451-228336711(+)$1	1	132	154	21.8799
((.((..............)).	chr7:150034634-150034986(+)$1	1	75	97	20.9623
(((((............)))))	chr7:100212768-100213041(+)$1	1	57	79	23.1547
(((((.............))))	chr19:34890939-34891232(+)$1	1	206	228	24.0920
(((((..............)))	chr22:38062100-38062376(+)$1	1	19	41	22.7910
(((((............)))))	chr4:1309442-1309760(+)$1	1	151	173	23.7512
(((((.............))))	chr19:41270971-41271311(+)$1	1	140	162	23.4557
((((((...........)))))	chr19:50154058-50154355(+)$1	1	100	122	22.3762
..(((.............))).	chr17:41167589-41167878(-)$1	1	118	140	23.4860
.((((............)))).	chr22:19754385-19754674(+)$1	1	121	143	23.2706
(((((............)))))	chr11:5290798-5291006(-)$1	1	125	147	23.0895
((((((...........)))))	chr4:83763256-83763562(-)$1	1	45	67	21.8757
((((((...........))).)	chr1:54678071-54678343(+)$1	1	109	131	22.0849
(((((............)))))	chr4:1309578-1309843(+)$1	1	15	37	23.7512
(((((............)))))	chr1:16263874-16264167(+)$1	1	88	110	23.0895
((((((...........)))))	chr22:41545975-41546289(+)$1	1	99	121	22.3762
.((((.............))))	chr19:36212055-36212342(+)$1	1	43	65	23.4104
)((((............)))).	chr16:88799311-88799574(-)$1	1	185	207	21.9819
(((((............)).))	chr8:57873427-57873744(-)$1	1	138	160	22.0161
((((((...........)))))	chr1:149858481-149858733(+)$1	1	202	224	22.3762
.((((............)))).	chrX:153626737-153626939(+)$1	1	76	98	23.2706
((((((...........)))))	chr18:19321363-19321621(+)$1	1	100	122	21.8757
(((((............)))))	chr19:56125134-56125518(+)$1	1	267	289	23.0895
(((((................)	chr1:8420959-8421266(-)$1	1	80	102	20.0744
(((((..............)))	chr4:119738329-119738602(-)$1	1	112	134	22.2990
(((((.............))))	chr17:47794839-47795099(-)$1	1	18	40	22.1377
(((((.............))))	chr5:126860233-126860581(+)$1	1	10	32	23.5514
(((((............))))(	chr6:33218199-33218460(-)$1	1	144	166	22.4021
.((((.............))))	chr12:54745070-54745364(+)$1	1	118	140	22.2332
(((((............)))))	chr17:42397108-42397343(-)$1	1	173	195	23.1547
(((((..............)))	chr10:75157952-75158245(-)$1	1	3	25	22.2990
((((((...........)))))	chr11:119205552-119205839(+)$1	1	26	48	21.8757
(((((.............))))	chr5:179227429-179227689(-)$1	1	230	252	24.0920
(((((.............))))	chr7:75053304-75053570(-)$1	1	83	105	23.5514
(((..............)))).	chr19:36211853-36212122(+)$1	1	157	179	20.8385
(((((................)	chr3:129034753-129035066(-)$1	1	121	143	20.0744
..(((.............))))	chr7:150730620-150730939(+)$1	1	225	247	23.5207
(((((............)))))	chr16:684984-685245(-)$1	1	44	66	23.0895
.((((............)))))	chr7:29923560-29923921(+)$1	1	194	216	23.1781
(((((..............)))	chr17:36413124-36413439(-)$1	1	215	237	22.2216
((((((...........)))))	chr12:53846029-53846261(+)$1	1	200	222	21.8757
.(((((...........)))))	chr19:54969849-54970153(+)$1	1	93	115	20.8679
(((((............)))))	chr19:40487113-40487378(+)$1	1	133	155	23.7202
(((((............)))))	chr17:7215371-7215637(+)$1	1	232	254	23.7512
(.(((............))).)	chrX:153589996-153590245(-)$1	1	196	218	23.1440
.((((............)))).	chrX:55033823-55034078(+)$1	1	166	188	20.9553
.((((..............)))	chr3:9860541-9860801(+)$1	1	71	93	21.9964
(((((.............))))	chr19:2039501-2039765(-)$1	1	138	160	22.1377
.((((............)))).	chr17:79801187-79801460(-)$1	1	247	269	23.2706
(((((.............))))	chr11:64534334-64534597(-)$1	1	51	73	23.5514

#PSSM
g : 0.19	f : 0.19	e : 0.14	d : 0.08	[ : 0.08	= : 0.06	h : 0.04	: : 0.04	i : 0.03	" : 0.03	! : 0.03	c : 0.01	F : 0.01	a : 0.01	
d : 0.25	g : 0.19	f : 0.19	e : 0.14	= : 0.06	h : 0.04	i : 0.03	! : 0.03	c : 0.01	[ : 0.01	
d : 0.24	f : 0.19	g : 0.17	e : 0.14	= : 0.06	c : 0.06	[ : 0.04	i : 0.03	h : 0.03	
d : 0.20	f : 0.19	g : 0.17	e : 0.14	b : 0.06	= : 0.06	c : 0.06	i : 0.03	h : 0.03	w : 0.01	
d : 0.20	f : 0.19	g : 0.17	e : 0.14	b : 0.06	= : 0.06	c : 0.06	i : 0.03	h : 0.03	w : 0.01	
u : 0.37	v : 0.22	w : 0.17	g : 0.06	f : 0.06	y : 0.03	d : 0.01	= : 0.01	c : 0.01	e : 0.01	
u : 0.37	v : 0.22	t : 0.19	w : 0.17	y : 0.03	
u : 0.37	v : 0.22	t : 0.19	w : 0.17	y : 0.03	
u : 0.37	v : 0.22	t : 0.19	w : 0.17	y : 0.03	
u : 0.37	v : 0.22	t : 0.19	w : 0.17	y : 0.03	
u : 0.37	v : 0.22	t : 0.19	w : 0.17	y : 0.03	
u : 0.37	v : 0.22	t : 0.19	w : 0.17	y : 0.03	
u : 0.37	v : 0.22	t : 0.19	w : 0.17	y : 0.03	
u : 0.37	v : 0.22	t : 0.19	w : 0.17	y : 0.03	
u : 0.37	v : 0.22	t : 0.19	w : 0.17	y : 0.03	
u : 0.37	v : 0.22	t : 0.19	w : 0.17	y : 0.03	
u : 0.37	v : 0.22	t : 0.19	w : 0.17	y : 0.03	
v : 0.22	d : 0.16	w : 0.16	f : 0.12	g : 0.09	= : 0.06	e : 0.06	b : 0.03	c : 0.03	y : 0.03	
d : 0.19	w : 0.16	f : 0.14	g : 0.12	e : 0.11	= : 0.06	c : 0.06	b : 0.03	i : 0.03	y : 0.03	h : 0.03	
d : 0.22	f : 0.19	g : 0.14	e : 0.14	= : 0.06	c : 0.06	b : 0.03	] : 0.03	i : 0.03	y : 0.03	h : 0.03	
d : 0.24	f : 0.19	g : 0.14	e : 0.14	= : 0.06	h : 0.04	b : 0.03	i : 0.03	c : 0.03	] : 0.03	y : 0.03	
f : 0.20	g : 0.17	e : 0.14	d : 0.09	] : 0.08	= : 0.06	h : 0.04	3 : 0.03	i : 0.03	2 : 0.03	: : 0.03	c : 0.01	b : 0.01	a : 0.01	

#score	1401.223226853457
#seq	62
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF565RQI_SSB_CDS_m2_run1.txt

#BEAR
""dddd####bb"""ccc!!ddddllldddd22ccc333b	chr21:47558657-47558894(-)$1	237	85	125	38.4426
ee[bbggggggg"""ccc!!ddddllldddd333ccc22g	chr2:86276172-86276383(-)$1	211	85	125	35.6887

#otherMatches

#Seq PSSM
CUGAGGAAAAGGACAGGUGAGCCUGGAGGGCCGGCCGCAC	chr21:47558657-47558894(-)$1	237	85	125	38.4426
CCACUGCGGGCCCCAGGUAAGGAGGGACUUCGAGGCCGUG	chr2:86276172-86276383(-)$1	211	85	125	35.6887

#DB
..((((....((...(((..((((...))))..)))...)	chr21:47558657-47558894(-)$1	1	85	125	38.4426
((.(((((((((...(((..((((...))))...)))..)	chr2:86276172-86276383(-)$1	1	85	125	35.6887

#PSSM
" : 0.50	e : 0.50	
" : 0.50	e : 0.50	
d : 0.50	[ : 0.50	
d : 0.50	b : 0.50	
d : 0.50	b : 0.50	
d : 0.50	g : 0.50	
# : 0.50	g : 0.50	
# : 0.50	g : 0.50	
# : 0.50	g : 0.50	
# : 0.50	g : 0.50	
b : 0.50	g : 0.50	
b : 0.50	g : 0.50	
" : 1.00	
" : 1.00	
" : 1.00	
c : 1.00	
c : 1.00	
c : 1.00	
! : 1.00	
! : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
l : 1.00	
l : 1.00	
l : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
2 : 0.50	3 : 0.50	
2 : 0.50	3 : 0.50	
c : 0.50	3 : 0.50	
c : 1.00	
c : 1.00	
3 : 0.50	c : 0.50	
3 : 0.50	2 : 0.50	
3 : 0.50	2 : 0.50	
b : 0.50	g : 0.50	

#score	74.13140460344997
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_transcript_m2_run2.txt

#BEAR
ffffffvvvvvvvvvvvvvffff	chr8:11675660-11675902(+)$1	242	90	113	22.9990
iiiiiiiuuuuuuuuuuuuiiii	chr1:85119668-85119948(-)$1	280	212	235	21.8890
[eeeeettttttttttteeeeeb	chrX:44847462-44847726(+)$1	264	210	233	22.0628
!fffffftttttttttttfffff	chr17:44205867-44206145(-)$1	278	227	250	21.2167
###ccctttttttttttccc333	chr7:127004604-127004849(-)$1	245	217	240	21.8763
eeeee[bbtttttttttttbb]e	chr3:99557776-99558080(+)$1	304	107	130	20.1291
ffffffuuuuuuuuuuuufffff	chr1:91456019-91456296(-)$1	277	48	71	22.0562
ffffcccuuuuuuuuuuuuccc:	chr17:20780192-20780572(+)$1	380	167	190	21.3543
"""ccctttttttttttcccfff	chr7:128226814-128227089(+)$1	275	11	34	21.7331
deeeeettttttttttteeeee2	chr1:235321710-235322018(-)$1	308	137	160	21.8437
##ddddtttttttttttdddd44	chr12:76465556-76465845(-)$1	289	80	103	21.4542
cc[cccvvvvvvvvvvvvvccc]	chr15:78833724-78834123(+)$1	399	39	62	23.8577
ffffffuuuuuuuuuuuufffff	chr8:90763529-90763845(-)$1	316	168	191	22.0562
fffffftttttttttttffffff	chr3:33674998-33675261(-)$1	263	80	103	20.8518
eeddddvvvvvvvvvvvvvdddd	chr2:198840023-198840415(+)$1	392	338	361	23.3368
###cccuuuuuuuuuuuuccc44	chr10:97897964-97898238(+)$1	274	144	167	23.0117
ee!!cccuuuuuuuuuuuuccc2	chr11:68291618-68291853(+)$1	235	89	112	22.2766
[eeeeettttttttttteeeeec	chr2:32443979-32444269(+)$1	290	28	51	22.2946
======vvvvvvvvvvvvv====	chr8:17855649-17855987(+)$1	338	53	76	23.7854
cc[cccvvvvvvvvvvvvvccc]	chr8:130505417-130505674(-)$1	257	128	151	23.8577
!eeeeeuuuuuuuuuuuueeeee	chr7:101470448-101470739(+)$1	291	38	61	23.5096
:ccc[avvvvvvvvvvvvva]cc	chr8:141918384-141918663(-)$1	279	90	113	22.6445
ffffffuuuuuuuuuuuufffff	chr6:135327416-135327680(-)$1	264	130	153	22.0562
&&&cccuuuuuuuuuuuuccc88	chr2:145231075-145231424(-)$1	349	215	238	20.2630
"ddddwwwwwwwwwwwwwwdddd	chr22:23571276-23571564(+)$1	288	74	97	21.9552
h[cccwwwwwwwwwwwwwwccc]	chr13:60699842-60700158(-)$1	316	94	117	21.9473
[ddddwwwwwwwwwwwwwwdddd	chr6:4826618-4826848(+)$1	230	136	159	21.9520
======vvvvvvvvvvvvv====	chr7:151840297-151840588(-)$1	291	173	196	23.7854
:eeeeettttttttttteeeee:	chr1:167976675-167976992(+)$1	317	282	305	20.6465
ffffffyyyyyyyyyyyyyyyyf	chr10:7407940-7408267(-)$1	327	241	264	19.3613
dddd[ccctttttttttttccc]	chr3:5194008-5194344(+)$1	336	155	178	20.8167
geeeeeuuuuuuuuuuuueeeee	chr9:94638744-94639013(-)$1	269	187	210	23.2917
[eeeeewwwwwwwwwwwwwweee	chr15:85588121-85588479(+)$1	358	133	156	22.7141
:eeeeevvvvvvvvvvvvveeee	chr12:116614432-116614687(-)$1	255	230	253	23.5281
:eeeeettttttttttteeeee:	chr1:113646776-113647072(+)$1	296	66	89	20.6465
ddd[cccuuuuuuuuuuuucccd	chr19:28913918-28914241(-)$1	323	225	248	22.0489
iiiiiiiuuuuuuuuuuuuiiii	chr1:51902204-51902508(-)$1	304	272	295	21.8890
:eeeeeuuuuuuuuuuuueeeee	chr2:225396998-225397270(-)$1	272	75	98	22.6402
$ddddwwwwwwwwwwwwwwdddd	chr2:242280131-242280421(+)$1	290	227	250	21.7736
:eeeeeuuuuuuuuuuuueeeee	chr6:38069772-38070057(+)$1	285	66	89	22.6402
:eeeeevvvvvvvvvvvvveeee	chr7:127359651-127359935(+)$1	284	161	184	23.5281
feeeeettttttttttteeeee2	chr4:151897904-151898211(-)$1	307	76	99	21.9329
hhhhhhwwwwwwwwwwwwwwhhh	chr7:120635838-120636106(+)$1	268	48	71	20.1007
:eeeeettttttttttteeeee:	chr1:78066994-78067249(-)$1	255	30	53	20.6465
###bbwwwwwwwwwwwwwwbb44	chr8:23391938-23392153(+)$1	215	5	28	20.9913
"""cccuuuuuuuuuuuuccc]d	chr9:94983751-94984015(-)$1	264	225	248	22.9622
::dddduuuuuuuuuuuudddd:	chr13:19570342-19570607(-)$1	265	102	125	19.9221
ffffffuuuuuuuuuuuufffff	chr7:110902379-110902644(-)$1	265	228	251	22.0562
c[ddddvvvvvvvvvvvvvdddd	chr12:6714232-6714551(-)$1	319	128	151	23.4487
=======uuuuuuuuuuuu====	chr2:179112080-179112418(+)$1	338	30	53	22.2625
hhhhhhvvvvvvvvvvvvvhhhh	chr5:130887761-130888047(-)$1	286	239	262	21.5149
ffffffyyyyyyyyyyyyyyyyf	chr11:68260268-68260534(+)$1	266	125	148	19.3613
#dddd!!attttttttttta22d	chr8:91305283-91305537(+)$1	254	44	67	20.8059
!!dddduuuuuuuuuuuudddd2	chr5:145864344-145864640(+)$1	296	133	156	22.6564
::ddddvvvvvvvvvvvvvdddd	chr8:91484619-91484954(+)$1	335	10	33	21.6935
!!ddddvvvvvvvvvvvvvdddd	chr1:91968387-91968668(+)$1	281	167	190	23.6800
eeeeeevvvvvvvvvvvvveeee	chr4:104095132-104095386(-)$1	254	164	187	24.0412
fffffccctttttttttttccc]	chr3:44512987-44513243(-)$1	256	34	57	20.8893
[eeeeevvvvvvvvvvvvveeee	chr10:33227774-33228069(-)$1	295	190	213	24.3685
======yyyyyyyyyyyyyyyy=	chr22:48128306-48128552(+)$1	246	55	78	19.8857
:eeeeeuuuuuuuuuuuueeeee	chr17:58360760-58361067(-)$1	307	200	223	22.6402
gggggccctttttttttttccc:	chr1:165842794-165843143(+)$1	349	26	49	20.2297
ggggggvvvvvvvvvvvvvgggg	chr6:8088836-8089131(-)$1	295	184	207	23.5664
:ddddwwwwwwwwwwwwwwdddd	chr6:3268601-3268858(+)$1	257	67	90	21.1116
ggg[bbvvvvvvvvvvvvvbb]g	chr22:20071869-20072133(+)$1	264	149	172	22.5208
:eeeeevvvvvvvvvvvvveeee	chr10:892325-892591(-)$1	266	187	210	23.5281

#otherMatches

#Seq PSSM
cuguucuuuuacauuugcugagc	chr8:11675660-11675902(+)$1	242	90	113	22.9990
UGGGAUAUUCUCUUACCUUUAUC	chr1:85119668-85119948(-)$1	280	212	235	21.8890
uccagcuuuguuccguugcuggu	chrX:44847462-44847726(+)$1	264	210	233	22.0628
aaggacaacuucacucucugucc	chr17:44205867-44206145(-)$1	278	227	250	21.2167
cucuucuauacuaccuugaaccu	chr7:127004604-127004849(-)$1	245	217	240	21.8763
UGCCCCCACACCUUUACCUUGUG	chr3:99557776-99558080(+)$1	304	107	130	20.1291
aguugcucuaaucauuauguagc	chr1:91456019-91456296(-)$1	277	48	71	22.0562
gaaaagcuuuacacucucugcuc	chr17:20780192-20780572(+)$1	380	167	190	21.3543
ucugcuuuuuuuccccuggcugc	chr7:128226814-128227089(+)$1	275	11	34	21.7331
UGUCUUCCCUCUUGUCCAAGAUU	chr1:235321710-235322018(-)$1	308	137	160	21.8437
uuagaauggucauuuuuuuuuuu	chr12:76465556-76465845(-)$1	289	80	103	21.4542
CUCuuauuuauauauauuuuaaa	chr15:78833724-78834123(+)$1	399	39	62	23.8577
cuucauccuuuucUCUUAAUGAA	chr8:90763529-90763845(-)$1	316	168	191	22.0562
auggccucuuguugauuggucau	chr3:33674998-33675261(-)$1	263	80	103	20.8518
cucuaaaaauacuuaaaaauuag	chr2:198840023-198840415(+)$1	392	338	361	23.3368
ucuagcuuucccucuaaugcuuu	chr10:97897964-97898238(+)$1	274	144	167	23.0117
ugguucuuauuucauccuugggu	chr11:68291618-68291853(+)$1	235	89	112	22.2766
UCUGAUUAUUUAUUUCUGUUAGG	chr2:32443979-32444269(+)$1	290	28	51	22.2946
gauuuuuggucccuuuguugagg	chr8:17855649-17855987(+)$1	338	53	76	23.7854
AGAAGUUCUUUUCCUUUAUACUC	chr8:130505417-130505674(-)$1	257	128	151	23.8577
caaaaauccacguauaacuuuuU	chr7:101470448-101470739(+)$1	291	38	61	23.5096
agacucuuucuucuucauugugu	chr8:141918384-141918663(-)$1	279	90	113	22.6445
uaagcucuucaugaucacagcuu	chr6:135327416-135327680(-)$1	264	130	153	22.0562
CUAGCAGUCCCUUAUCCAUGCCG	chr2:145231075-145231424(-)$1	349	215	238	20.2630
uguuuauuuuuugguucuaaaau	chr22:23571276-23571564(+)$1	288	74	97	21.9552
GUAGCUUCACCUUUCCAAUGUUU	chr13:60699842-60700158(-)$1	316	94	117	21.9473
uacauugcauacuuuuucugugu	chr6:4826618-4826848(+)$1	230	136	159	21.9520
AUCUUUCUUGUCUAUUUUUAGAG	chr7:151840297-151840588(-)$1	291	173	196	23.7854
uuguucuaucuccuucugaauau	chr1:167976675-167976992(+)$1	317	282	305	20.6465
GGUCACACCCUAUCUGCACCACG	chr10:7407940-7408267(-)$1	327	241	264	19.3613
aaaguggguuucucuucuuuccu	chr3:5194008-5194344(+)$1	336	155	178	20.8167
ucuugguuAAUUCUUGGUUCAAG	chr9:94638744-94639013(-)$1	269	187	210	23.2917
ccagugucccaccuuauuuccac	chr15:85588121-85588479(+)$1	358	133	156	22.7141
AUUUGGUUUUCAAAAUUCUCCAG	chr12:116614432-116614687(-)$1	255	230	253	23.5281
cuuugauaugacucccuucaaau	chr1:113646776-113647072(+)$1	296	66	89	20.6465
gugcagugcugcaguuauaacuc	chr19:28913918-28914241(-)$1	323	225	248	22.0489
uauaacacuuaucauucuuuguu	chr1:51902204-51902508(-)$1	304	272	295	21.8890
uuguuuuuuuuuuuuuuuaagca	chr2:225396998-225397270(-)$1	272	75	98	22.6402
UCAGGCUUCCUGUCAUCCACCUG	chr2:242280131-242280421(+)$1	290	227	250	21.7736
CAGAAAUCAucuuccuccuuucu	chr6:38069772-38070057(+)$1	285	66	89	22.6402
ACACUGCUUUCAUUGCUUACAGU	chr7:127359651-127359935(+)$1	284	161	184	23.5281
ugaggcuugucaauacuguuucc	chr4:151897904-151898211(-)$1	307	76	99	21.9329
AAAGACCACAACAUUCUUCAGuu	chr7:120635838-120636106(+)$1	268	48	71	20.1007
cuaucagcauuuaaacaugauac	chr1:78066994-78067249(-)$1	255	30	53	20.6465
ccugauuuucuuccugcuuucuc	chr8:23391938-23392153(+)$1	215	5	28	20.9913
CCACUGCAAUCACUUCCCCAGAC	chr9:94983751-94984015(-)$1	264	225	248	22.9622
CUGGCCUACUGACCUUCUGGCCU	chr13:19570342-19570607(-)$1	265	102	125	19.9221
aggccuuuacuagcauucaggcc	chr7:110902379-110902644(-)$1	265	228	251	22.0562
UUCUAGUUUUCUUCUCAUUCUGG	chr12:6714232-6714551(-)$1	319	128	151	23.4487
cuuugcuucaugguuucuuggca	chr2:179112080-179112418(+)$1	338	30	53	22.2625
UCACUCCCUACAAACAUCAGAGU	chr5:130887761-130888047(-)$1	286	239	262	21.5149
UGGCCUCUCUUAAUUUUCUUCUG	chr11:68260268-68260534(+)$1	266	125	148	19.3613
cguggcccuacauuauccugauc	chr8:91305283-91305537(+)$1	254	44	67	20.8059
uucuuguuccucuuuagucaagu	chr5:145864344-145864640(+)$1	296	133	156	22.6564
ccugucuucuuuccuucgugaca	chr8:91484619-91484954(+)$1	335	10	33	21.6935
UAUUCUUUUUCUAUUGCUUAGGA	chr1:91968387-91968668(+)$1	281	167	190	23.6800
gcugcaguaaauaugggaaugca	chr4:104095132-104095386(-)$1	254	164	187	24.0412
UAGUUUCUUUUUUAUCCCUGGAU	chr3:44512987-44513243(-)$1	256	34	57	20.8893
CGAGGCUCCCUGGCCCUCUGCCU	chr10:33227774-33228069(-)$1	295	190	213	24.3685
UCAGCUCUUUCUAUUCCUGCCCA	chr22:48128306-48128552(+)$1	246	55	78	19.8857
UAUAAGUUUCUUAUCUUUCUUAU	chr17:58360760-58361067(-)$1	307	200	223	22.6402
gaaaacccuuucucccguugggc	chr1:165842794-165843143(+)$1	349	26	49	20.2297
auuaguccauuuucacgcugcug	chr6:8088836-8089131(-)$1	295	184	207	23.5664
UCAGGUCCUUCUUUCUCUUCCUG	chr6:3268601-3268858(+)$1	257	67	90	21.1116
GAGUUGCAUCCUUAACCCUCAUC	chr22:20071869-20072133(+)$1	264	149	172	22.5208
acacacuucccaccuuccugugu	chr10:892325-892591(-)$1	266	187	210	23.5281

#DB
((((((.............))))	chr8:11675660-11675902(+)$1	1	90	113	22.9990
(((((((............))))	chr1:85119668-85119948(-)$1	1	212	235	21.8890
.(((((...........))))))	chrX:44847462-44847726(+)$1	1	210	233	22.0628
.((((((...........)))))	chr17:44205867-44206145(-)$1	1	227	250	21.2167
...(((...........)))...	chr7:127004604-127004849(-)$1	1	217	240	21.8763
(((((.((...........)).)	chr3:99557776-99558080(+)$1	1	107	130	20.1291
((((((............)))))	chr1:91456019-91456296(-)$1	1	48	71	22.0562
))))(((............))).	chr17:20780192-20780572(+)$1	1	167	190	21.3543
...(((...........))))))	chr7:128226814-128227089(+)$1	1	11	34	21.7331
((((((...........))))).	chr1:235321710-235322018(-)$1	1	137	160	21.8437
..((((...........))))..	chr12:76465556-76465845(-)$1	1	80	103	21.4542
((.(((.............))).	chr15:78833724-78834123(+)$1	1	39	62	23.8577
((((((............)))))	chr8:90763529-90763845(-)$1	1	168	191	22.0562
((((((...........))))))	chr3:33674998-33675261(-)$1	1	80	103	20.8518
((((((.............))))	chr2:198840023-198840415(+)$1	1	338	361	23.3368
...(((............)))..	chr10:97897964-97898238(+)$1	1	144	167	23.0117
((..(((............))).	chr11:68291618-68291853(+)$1	1	89	112	22.2766
.(((((...........))))))	chr2:32443979-32444269(+)$1	1	28	51	22.2946
((((((.............))))	chr8:17855649-17855987(+)$1	1	53	76	23.7854
((.(((.............))).	chr8:130505417-130505674(-)$1	1	128	151	23.8577
.(((((............)))))	chr7:101470448-101470739(+)$1	1	38	61	23.5096
.(((.(.............).))	chr8:141918384-141918663(-)$1	1	90	113	22.6445
((((((............)))))	chr6:135327416-135327680(-)$1	1	130	153	22.0562
...(((............)))..	chr2:145231075-145231424(-)$1	1	215	238	20.2630
.((((..............))))	chr22:23571276-23571564(+)$1	1	74	97	21.9552
(.(((..............))).	chr13:60699842-60700158(-)$1	1	94	117	21.9473
.((((..............))))	chr6:4826618-4826848(+)$1	1	136	159	21.9520
((((((.............))))	chr7:151840297-151840588(-)$1	1	173	196	23.7854
.(((((...........))))).	chr1:167976675-167976992(+)$1	1	282	305	20.6465
((((((................)	chr10:7407940-7408267(-)$1	1	241	264	19.3613
((((.(((...........))).	chr3:5194008-5194344(+)$1	1	155	178	20.8167
((((((............)))))	chr9:94638744-94639013(-)$1	1	187	210	23.2917
.(((((..............)))	chr15:85588121-85588479(+)$1	1	133	156	22.7141
.(((((.............))))	chr12:116614432-116614687(-)$1	1	230	253	23.5281
.(((((...........))))).	chr1:113646776-113647072(+)$1	1	66	89	20.6465
(((.(((............))))	chr19:28913918-28914241(-)$1	1	225	248	22.0489
(((((((............))))	chr1:51902204-51902508(-)$1	1	272	295	21.8890
.(((((............)))))	chr2:225396998-225397270(-)$1	1	75	98	22.6402
.((((..............))))	chr2:242280131-242280421(+)$1	1	227	250	21.7736
.(((((............)))))	chr6:38069772-38070057(+)$1	1	66	89	22.6402
.(((((.............))))	chr7:127359651-127359935(+)$1	1	161	184	23.5281
((((((...........))))).	chr4:151897904-151898211(-)$1	1	76	99	21.9329
((((((..............)))	chr7:120635838-120636106(+)$1	1	48	71	20.1007
.(((((...........))))).	chr1:78066994-78067249(-)$1	1	30	53	20.6465
...((..............))..	chr8:23391938-23392153(+)$1	1	5	28	20.9913
...(((............))).)	chr9:94983751-94984015(-)$1	1	225	248	22.9622
..((((............)))).	chr13:19570342-19570607(-)$1	1	102	125	19.9221
((((((............)))))	chr7:110902379-110902644(-)$1	1	228	251	22.0562
(.((((.............))))	chr12:6714232-6714551(-)$1	1	128	151	23.4487
(((((((............))))	chr2:179112080-179112418(+)$1	1	30	53	22.2625
((((((.............))))	chr5:130887761-130888047(-)$1	1	239	262	21.5149
((((((................)	chr11:68260268-68260534(+)$1	1	125	148	19.3613
.((((..(...........)..)	chr8:91305283-91305537(+)$1	1	44	67	20.8059
..((((............)))).	chr5:145864344-145864640(+)$1	1	133	156	22.6564
..((((.............))))	chr8:91484619-91484954(+)$1	1	10	33	21.6935
..((((.............))))	chr1:91968387-91968668(+)$1	1	167	190	23.6800
((((((.............))))	chr4:104095132-104095386(-)$1	1	164	187	24.0412
((((((((...........))).	chr3:44512987-44513243(-)$1	1	34	57	20.8893
.(((((.............))))	chr10:33227774-33228069(-)$1	1	190	213	24.3685
((((((................)	chr22:48128306-48128552(+)$1	1	55	78	19.8857
.(((((............)))))	chr17:58360760-58361067(-)$1	1	200	223	22.6402
)))))(((...........))).	chr1:165842794-165843143(+)$1	1	26	49	20.2297
((((((.............))))	chr6:8088836-8089131(-)$1	1	184	207	23.5664
.((((..............))))	chr6:3268601-3268858(+)$1	1	67	90	21.1116
(((.((.............)).)	chr22:20071869-20072133(+)$1	1	149	172	22.5208
.(((((.............))))	chr10:892325-892591(-)$1	1	187	210	23.5281

#PSSM
: : 0.19	f : 0.16	[ : 0.07	# : 0.07	! : 0.06	e : 0.06	= : 0.06	g : 0.06	" : 0.04	d : 0.04	c : 0.04	h : 0.04	i : 0.03	& : 0.01	$ : 0.01	
e : 0.31	f : 0.16	d : 0.10	# : 0.06	= : 0.06	c : 0.04	g : 0.04	i : 0.03	" : 0.03	[ : 0.03	h : 0.03	: : 0.03	! : 0.03	& : 0.01	
e : 0.28	d : 0.21	f : 0.16	= : 0.06	# : 0.04	g : 0.04	i : 0.03	" : 0.03	[ : 0.03	c : 0.03	h : 0.03	! : 0.01	& : 0.01	
e : 0.28	d : 0.19	f : 0.16	c : 0.13	= : 0.06	i : 0.03	[ : 0.03	h : 0.03	g : 0.03	! : 0.01	b : 0.01	
e : 0.28	d : 0.18	c : 0.16	f : 0.15	= : 0.06	i : 0.03	[ : 0.03	h : 0.03	b : 0.03	g : 0.03	
e : 0.27	c : 0.19	f : 0.13	d : 0.10	w : 0.09	= : 0.06	i : 0.03	h : 0.03	[ : 0.01	a : 0.01	! : 0.01	g : 0.01	b : 0.01	
v : 0.27	u : 0.21	t : 0.16	w : 0.12	c : 0.09	y : 0.04	i : 0.03	f : 0.01	b : 0.01	= : 0.01	! : 0.01	
u : 0.30	v : 0.27	t : 0.18	w : 0.12	y : 0.04	c : 0.04	b : 0.01	a : 0.01	
u : 0.30	v : 0.27	t : 0.25	w : 0.12	y : 0.04	
u : 0.30	v : 0.27	t : 0.25	w : 0.12	y : 0.04	
u : 0.30	v : 0.27	t : 0.25	w : 0.12	y : 0.04	
u : 0.30	v : 0.27	t : 0.25	w : 0.12	y : 0.04	
u : 0.30	v : 0.27	t : 0.25	w : 0.12	y : 0.04	
u : 0.30	v : 0.27	t : 0.25	w : 0.12	y : 0.04	
u : 0.30	v : 0.27	t : 0.25	w : 0.12	y : 0.04	
u : 0.30	v : 0.27	t : 0.25	w : 0.12	y : 0.04	
u : 0.30	v : 0.27	t : 0.25	w : 0.12	y : 0.04	
u : 0.30	v : 0.27	w : 0.12	e : 0.10	t : 0.09	y : 0.04	c : 0.03	d : 0.01	f : 0.01	
v : 0.27	e : 0.18	w : 0.12	u : 0.09	f : 0.09	c : 0.07	t : 0.07	d : 0.04	y : 0.04	
e : 0.25	c : 0.21	d : 0.16	f : 0.10	b : 0.04	= : 0.04	y : 0.04	i : 0.03	a : 0.03	w : 0.03	h : 0.01	g : 0.01	
e : 0.27	c : 0.18	d : 0.16	f : 0.12	b : 0.04	= : 0.04	y : 0.04	i : 0.03	h : 0.03	3 : 0.01	] : 0.01	2 : 0.01	g : 0.01	
e : 0.27	c : 0.15	d : 0.15	f : 0.12	] : 0.04	4 : 0.04	= : 0.04	y : 0.04	i : 0.03	h : 0.03	3 : 0.01	8 : 0.01	2 : 0.01	g : 0.01	
e : 0.18	d : 0.16	f : 0.15	: : 0.09	] : 0.07	2 : 0.06	= : 0.06	4 : 0.04	i : 0.03	c : 0.03	h : 0.03	g : 0.03	b : 0.01	3 : 0.01	8 : 0.01	

#score	1454.4006729953214
#seq	66
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF296JHG_HNRNPL_transcript_m2_run1.txt

#BEAR
dd[dddd^^^^^^^^^^^^^^^^^^^ddd	chr8:91480738-91481013(+)$1	275	59	88	31.1194
gggggg^^^^^^^^^^^^^^^^^^^^ggg	chr9:34635254-34635579(-)$1	325	37	66	32.8015
ffffff^^^^^^^^^^^^^^^^^^fffff	chr7:11179653-11180037(+)$1	384	312	341	29.6902
eeeeecccyyyyyyyyyyyyyyyyccc]e	chr6:34958942-34959240(+)$1	298	108	137	23.4260
eee^^^^^^^^^^^^^^^^^^^^^eeeee	chr2:178215520-178215756(-)$1	236	138	167	31.0656
[eeeee^^^^^^^^^^^^^^^^^^eeeee	chr5:95271584-95271852(-)$1	268	223	252	30.9446
eeeee^^^^^^^^^^^^^^^^^^^^^eee	chr16:3863932-3864313(-)$1	381	190	219	32.9847
eee^^^^^^^^^^^^^^^^^^^eeeee::	chr22:49898761-49898997(-)$1	236	2	31	26.1742
c[eeeeeyyyyyyyyyyyyyyyyeeeeec	chr8:99805000-99805326(-)$1	326	202	231	23.2561
hhhhhh^^^^^^^^^^^^^^^^^^^^^^^	chr12:25022888-25023172(-)$1	284	104	133	31.6738
ffffff^^^^^^^^^^^^^^^^^^^ffff	chr22:26220897-26221199(+)$1	302	77	106	30.9063
gg!!bb^^^^^^^^^^^^^^^^^^^^^^b	chr12:105063104-105063344(+)$1	240	40	69	32.7107
=========yyyyyyyyyyyyyyyy====	chr5:72345633-72345938(+)$1	305	43	72	23.0890
ddd^^^^^^^^^^^^^^^^^^^^^^^ddd	chr10:49546746-49547007(+)$1	261	62	91	32.6541
^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr4:160205560-160205876(+)$1	316	118	147	32.4097
ccc[bb^^^^^^^^^^^^^^^^^^^^^^b	chr6:34302847-34303090(-)$1	243	40	69	32.4431
!!dddd^^^^^^^^^^^^^^^^^^^^ddd	chr8:93807671-93807932(-)$1	261	19	48	32.7102
!!bb^^^^^^^^^^^^^^^^^^^^bb22d	chr19:3361780-3362112(+)$1	332	50	79	29.9498
dddddd^^^^^^^^^^^^^^^^^^^^ddd	chr10:43894874-43895137(-)$1	263	39	68	32.3525
ddddbb^^^^^^^^^^^^^^^^^^^^bb]	chr1:163307214-163307487(+)$1	273	136	165	31.9821
d!!eeeeeyyyyyyyyyyyyyyyyeeeee	chr4:56484155-56484454(-)$1	299	203	232	23.2639
ggggggyyyyyyyyyyyyyyyyggggggg	chr6:2376829-2377105(+)$1	276	67	96	22.5848
hhhhhh^^^^^^^^^^^^^^^^^^^^^hh	chr21:46903855-46904091(+)$1	236	106	135	31.5056
ffffff^^^^^^^^^^^^^^^^^^^^fff	chr12:54781727-54781994(-)$1	267	184	213	31.8389
d[bb[bb^^^^^^^^^^^^^^^^^^^bb]	chr22:24450631-24450926(+)$1	295	68	97	30.5667
ee[ccc^^^^^^^^^^^^^^^^^^^ccc]	chr1:26600532-26600858(+)$1	326	191	220	32.2598
dd[bb^^^^^^^^^^^^^^^^^^^^^bb]	chr3:50055364-50055648(+)$1	284	46	75	32.2145
ff[ccc^^^^^^^^^^^^^^^^^^^^^^c	chr21:46950327-46950629(-)$1	302	192	221	32.8762
hhhhhh^^^^^^^^^^^^^^^^^^^hhhh	chr5:95271652-95272001(-)$1	349	122	151	29.8121
c!!ccc^^^^^^^^^^^^^^^^^^ccc22	chr5:145200597-145200865(-)$1	268	88	117	30.8988
###ccc^^^^^^^^^^^^^^^^^^^^ccc	chr7:158574675-158574922(-)$1	247	202	231	32.8237
iiiiii^^^^^^^^^^^^^^^^^^^^^^i	chr1:90025091-90025388(+)$1	297	91	120	33.0328
f"""bb^^^^^^^^^^^^^^^^^^^^^bb	chr7:119452737-119452963(-)$1	226	167	196	32.2137
eeee^^^^^^^^^^^^^^^^^^^^^^eee	chr15:49067812-49068125(-)$1	313	203	232	33.0447
ddd[bb^^^^^^^^^^^^^^^^^^^^bb]	chr6:161615355-161615631(-)$1	276	93	122	32.0792
======^^^^^^^^^^^^^^^^^^^^^^=	chr15:77605856-77606158(-)$1	302	83	112	33.1976
eeee^^^^^^^^^^^^^^^^^^^^^^eee	chr1:143169217-143169535(+)$1	318	160	189	33.0447
cc!!dddd^^^^^^^^^^^^^^^^^^ddd	chr22:32025463-32025777(-)$1	314	90	119	29.8378
dd^^^^^^^^^^^^^^^^^^^^^^^^ddd	chr8:143394329-143394579(-)$1	250	132	161	32.5539
hhhhhh^^^^^^^^^^^^^^^^^^^^^^^	chr2:44183432-44183714(-)$1	282	21	50	31.6738
eeeee^^^^^^^^^^^^^^^^^^^eeeee	chr19:434205-434530(-)$1	325	101	130	31.0636
gggggg^^^^^^^^^^^^^^^^^^^^ggg	chr1:12025900-12026292(+)$1	392	252	281	32.8015
^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr4:160207133-160207454(+)$1	321	107	136	30.5284
ccdddd^^^^^^^^^^^^^^^^^^^^ddd	chr21:45730893-45731141(+)$1	248	111	140	32.5064
======^^^^^^^^^^^^^^^^^^^^^==	chr1:46741178-46741528(+)$1	350	120	149	33.2372
###ccc^^^^^^^^^^^^^^^^^^^ccce	chr17:78813792-78814162(+)$1	370	9	38	32.0649
[eeeeeyyyyyyyyyyyyyyyyeeeee]b	chr22:49870300-49870608(-)$1	308	199	228	22.6513
:eeeee^^^^^^^^^^^^^^^^^^^^eee	chr5:53243038-53243296(-)$1	258	77	106	31.7583
c[dddd^^^^^^^^^^^^^^^^^^^^^dd	chr5:131025069-131025346(-)$1	277	138	167	32.7726
ccdddd^^^^^^^^^^^^^^^^^^^dddd	chr8:25347034-25347297(+)$1	263	98	127	31.5588
ccc^^^^^^^^^^^^^^^^^^^^^^^ccc	chr1:27922187-27922504(-)$1	317	27	56	32.9258
ffff[bbyyyyyyyyyyyyyyyybbffff	chr16:4719002-4719235(+)$1	233	120	149	22.1191
$$dddd^^^^^^^^^^^^^^^^^^dddd4	chr11:47601514-47601788(+)$1	274	202	231	29.8635
iiiiiii^^^^^^^^^^^^^^^^^^iiii	chr15:27634620-27634982(+)$1	362	266	295	30.5094

#otherMatches

#Seq PSSM
auccuuaccucucaaaaccaaaacauuaa	chr8:91480738-91481013(+)$1	275	59	88	31.1194
AGGGACAUACACCAUGCAGAUCCUGAGUU	chr9:34635254-34635579(-)$1	325	37	66	32.8015
aaauguucacagcucaguaaauCUACAUU	chr7:11179653-11180037(+)$1	384	312	341	29.6902
ACACAUAUACUCACACACAUACACAUGCU	chr6:34958942-34959240(+)$1	298	108	137	23.4260
UCUCUCUCUCUCUCACACACACACAGACA	chr2:178215520-178215756(-)$1	236	138	167	31.0656
UCAUGUGGUCAGAUUUGCAUUUUAACAUG	chr5:95271584-95271852(-)$1	268	223	252	30.9446
AGUAUUACCCAUCUGAUCACACACUCAUA	chr16:3863932-3864313(-)$1	381	190	219	32.9847
gaccaucaucaucaucaccauugucauca	chr22:49898761-49898997(-)$1	236	2	31	26.1742
uacagucucuuuauccaguuguugauuga	chr8:99805000-99805326(-)$1	326	202	231	23.2561
UGGGAAGUUUCCUUUUCACUCUCACACUC	chr12:25022888-25023172(-)$1	284	104	133	31.6738
ugugcacagauauauauauaacacaugca	chr22:26220897-26221199(+)$1	302	77	106	30.9063
CUUUGCUUGUUUUGAAUCCAUUCCCCCUG	chr12:105063104-105063344(+)$1	240	40	69	32.7107
GUGUGUauacacacauauacauauauaua	chr5:72345633-72345938(+)$1	305	43	72	23.0890
uucuauacaccaauaacauucaagcugag	chr10:49546746-49547007(+)$1	261	62	91	32.6541
cacacacacGAAUUGUAAAUGAAACAGUG	chr4:160205560-160205876(+)$1	316	118	147	32.4097
CUUUUGCUUCAUCAAAACUCCAUAACAUC	chr6:34302847-34303090(-)$1	243	40	69	32.4431
uauacuauccagacacuucauuccuaggu	chr8:93807671-93807932(-)$1	261	19	48	32.7102
CAUGCAGUCAUAGUUACACACACACACAC	chr19:3361780-3362112(+)$1	332	50	79	29.9498
GUAUCUCUUCCCACCAUUCAUUUUCCAGA	chr10:43894874-43895137(-)$1	263	39	68	32.3525
CCAACAUACACACACUCUCAUAAuuuugc	chr1:163307214-163307487(+)$1	273	136	165	31.9821
UCAGUGGCAUUCAAAACCAUUAGAGCCAU	chr4:56484155-56484454(-)$1	299	203	232	23.2639
UCAGGGGUGAGCAGCUGAAGAACCCUGAU	chr6:2376829-2377105(+)$1	276	67	96	22.5848
auauguacacacacacacacuucuccagc	chr21:46903855-46904091(+)$1	236	106	135	31.5056
UCUCCACCUCUUCUGCCAAACCUGCCUGG	chr12:54781727-54781994(-)$1	267	184	213	31.8389
AACCUUGaacccaacacaacacacaacac	chr22:24450631-24450926(+)$1	295	68	97	30.5667
CUCUUCUACCCCUUUCCAUGUCUCUGAAC	chr1:26600532-26600858(+)$1	326	191	220	32.2598
acagccuccccaacuaucagcauccugca	chr3:50055364-50055648(+)$1	284	46	75	32.2145
CUUGCCCUGCUCCCAACCCCACCCUCUAG	chr21:46950327-46950629(-)$1	302	192	221	32.8762
uacaucacauagcuuuacacauauagaug	chr5:95271652-95272001(-)$1	349	122	151	29.8121
ggacuuacacacacacacacagaagagga	chr5:145200597-145200865(-)$1	268	88	117	30.8988
CUUACACCUCACUUUGUUCACACACUUGU	chr7:158574675-158574922(-)$1	247	202	231	32.8237
AUAUAUacacacacacacacacacacaca	chr1:90025091-90025388(+)$1	297	91	120	33.0328
aaucacuuauaacuuuuuucaauuuuugu	chr7:119452737-119452963(-)$1	226	167	196	32.2137
gacaacuaaucuacuaaucuacuuccugu	chr15:49067812-49068125(-)$1	313	203	232	33.0447
ugcacacacacacauacacacauacaugc	chr6:161615355-161615631(-)$1	276	93	122	32.0792
auauauacacacacacacacacacauaca	chr15:77605856-77606158(-)$1	302	83	112	33.1976
GUCUACCACUAUCAACCCACUCACCAAGA	chr1:143169217-143169535(+)$1	318	160	189	33.0447
GUAAGUGUauacacgcauaccccuacaca	chr22:32025463-32025777(-)$1	314	90	119	29.8378
cagauaaacacagacacacagacacaugc	chr8:143394329-143394579(-)$1	250	132	161	32.5539
cuuucucucauacccucuuucucuacaca	chr2:44183432-44183714(-)$1	282	21	50	31.6738
agucucacucacuaucucacucacagacu	chr19:434205-434530(-)$1	325	101	130	31.0636
cacccagacaacacacacgcacccaGUGG	chr1:12025900-12026292(+)$1	392	252	281	32.8015
aacccaaaccaaccaaccaaccaugcagu	chr4:160207133-160207454(+)$1	321	107	136	30.5284
UCGCAGACAGACACACAGAGACAGACCUG	chr21:45730893-45731141(+)$1	248	111	140	32.5064
AGGUGGGCCAUAUCUCAUUUCCUUCAACC	chr1:46741178-46741528(+)$1	350	120	149	33.2372
GGUUCCUUuuguuuuuaaucuuauuggag	chr17:78813792-78814162(+)$1	370	9	38	32.0649
uccagucaucauccauccacccaCUGGUU	chr22:49870300-49870608(-)$1	308	199	228	22.6513
CCUUGCCACAUCCUAUCUUUCCCCCAGCA	chr5:53243038-53243296(-)$1	258	77	106	31.7583
uugcugucauucaauuuaauuuuccauua	chr5:131025069-131025346(-)$1	277	138	167	32.7726
CCGCUUCACUUCAUUUUUAAUACUAAAGC	chr8:25347034-25347297(+)$1	263	98	127	31.5588
AGCUCUAACACCUCUAAAACACAACUGCU	chr1:27922187-27922504(-)$1	317	27	56	32.9258
UUGCUGCUGCCUUUGAAAUAACUGUGCAG	chr16:4719002-4719235(+)$1	233	120	149	22.1191
gagaggcaaaaguucaguucccauccuca	chr11:47601514-47601788(+)$1	274	202	231	29.8635
AUUUGGUAAAAUGCUUAACAAACCAACCA	chr15:27634620-27634982(+)$1	362	266	295	30.5094

#DB
((.((((...................)))	chr8:91480738-91481013(+)$1	1	59	88	31.1194
((((((....................)))	chr9:34635254-34635579(-)$1	1	37	66	32.8015
((((((..................)))))	chr7:11179653-11180037(+)$1	1	312	341	29.6902
((((((((................))).)	chr6:34958942-34959240(+)$1	1	108	137	23.4260
(((.....................)))))	chr2:178215520-178215756(-)$1	1	138	167	31.0656
.(((((..................)))))	chr5:95271584-95271852(-)$1	1	223	252	30.9446
(((((.....................)))	chr16:3863932-3864313(-)$1	1	190	219	32.9847
(((...................)))))..	chr22:49898761-49898997(-)$1	1	2	31	26.1742
(.(((((................))))))	chr8:99805000-99805326(-)$1	1	202	231	23.2561
((((((.......................	chr12:25022888-25023172(-)$1	1	104	133	31.6738
((((((...................))))	chr22:26220897-26221199(+)$1	1	77	106	30.9063
((..((......................)	chr12:105063104-105063344(+)$1	1	40	69	32.7107
(((((((((................))))	chr5:72345633-72345938(+)$1	1	43	72	23.0890
(((.......................)))	chr10:49546746-49547007(+)$1	1	62	91	32.6541
..........................)))	chr4:160205560-160205876(+)$1	1	118	147	32.4097
(((.((......................)	chr6:34302847-34303090(-)$1	1	40	69	32.4431
..((((....................)))	chr8:93807671-93807932(-)$1	1	19	48	32.7102
..((....................))..)	chr19:3361780-3362112(+)$1	1	50	79	29.9498
((((((....................)))	chr10:43894874-43895137(-)$1	1	39	68	32.3525
((((((....................)).	chr1:163307214-163307487(+)$1	1	136	165	31.9821
(..(((((................)))))	chr4:56484155-56484454(-)$1	1	203	232	23.2639
((((((................)))))))	chr6:2376829-2377105(+)$1	1	67	96	22.5848
((((((.....................))	chr21:46903855-46904091(+)$1	1	106	135	31.5056
((((((....................)))	chr12:54781727-54781994(-)$1	1	184	213	31.8389
(.((.((...................)).	chr22:24450631-24450926(+)$1	1	68	97	30.5667
((.(((...................))).	chr1:26600532-26600858(+)$1	1	191	220	32.2598
((.((.....................)).	chr3:50055364-50055648(+)$1	1	46	75	32.2145
((.(((......................)	chr21:46950327-46950629(-)$1	1	192	221	32.8762
((((((...................))))	chr5:95271652-95272001(-)$1	1	122	151	29.8121
(..(((..................)))..	chr5:145200597-145200865(-)$1	1	88	117	30.8988
...(((....................)))	chr7:158574675-158574922(-)$1	1	202	231	32.8237
((((((......................)	chr1:90025091-90025388(+)$1	1	91	120	33.0328
(...((.....................))	chr7:119452737-119452963(-)$1	1	167	196	32.2137
((((......................)))	chr15:49067812-49068125(-)$1	1	203	232	33.0447
(((.((....................)).	chr6:161615355-161615631(-)$1	1	93	122	32.0792
((((((......................)	chr15:77605856-77606158(-)$1	1	83	112	33.1976
((((......................)))	chr1:143169217-143169535(+)$1	1	160	189	33.0447
((..((((..................)))	chr22:32025463-32025777(-)$1	1	90	119	29.8378
((........................)))	chr8:143394329-143394579(-)$1	1	132	161	32.5539
((((((.......................	chr2:44183432-44183714(-)$1	1	21	50	31.6738
(((((...................)))))	chr19:434205-434530(-)$1	1	101	130	31.0636
((((((....................)))	chr1:12025900-12026292(+)$1	1	252	281	32.8015
........................)))))	chr4:160207133-160207454(+)$1	1	107	136	30.5284
((((((....................)))	chr21:45730893-45731141(+)$1	1	111	140	32.5064
((((((.....................))	chr1:46741178-46741528(+)$1	1	120	149	33.2372
...(((...................))))	chr17:78813792-78814162(+)$1	1	9	38	32.0649
.(((((................))))).)	chr22:49870300-49870608(-)$1	1	199	228	22.6513
.(((((....................)))	chr5:53243038-53243296(-)$1	1	77	106	31.7583
(.((((.....................))	chr5:131025069-131025346(-)$1	1	138	167	32.7726
))((((...................))))	chr8:25347034-25347297(+)$1	1	98	127	31.5588
(((.......................)))	chr1:27922187-27922504(-)$1	1	27	56	32.9258
((((.((................))))))	chr16:4719002-4719235(+)$1	1	120	149	22.1191
..((((..................)))).	chr11:47601514-47601788(+)$1	1	202	231	29.8635
(((((((..................))))	chr15:27634620-27634982(+)$1	1	266	295	30.5094

#PSSM
d : 0.16	e : 0.14	c : 0.14	f : 0.11	g : 0.07	h : 0.07	= : 0.05	[ : 0.03	^ : 0.03	! : 0.03	# : 0.03	i : 0.03	: : 0.01	$ : 0.01	
e : 0.20	d : 0.12	f : 0.09	c : 0.09	g : 0.07	h : 0.07	! : 0.07	[ : 0.05	= : 0.05	^ : 0.03	# : 0.03	i : 0.03	" : 0.01	$ : 0.01	
e : 0.20	d : 0.16	[ : 0.07	f : 0.07	h : 0.07	! : 0.07	g : 0.05	= : 0.05	^ : 0.05	c : 0.03	b : 0.03	# : 0.03	i : 0.03	" : 0.01	
e : 0.18	d : 0.14	^ : 0.12	c : 0.09	f : 0.07	h : 0.07	g : 0.05	= : 0.05	b : 0.05	! : 0.03	[ : 0.03	i : 0.03	" : 0.01	
^ : 0.18	d : 0.14	e : 0.14	b : 0.11	c : 0.09	h : 0.07	g : 0.05	f : 0.05	= : 0.05	[ : 0.03	i : 0.03	
^ : 0.24	d : 0.14	b : 0.12	c : 0.11	e : 0.09	h : 0.07	g : 0.05	f : 0.05	= : 0.05	i : 0.03	
^ : 0.79	d : 0.03	e : 0.03	y : 0.03	b : 0.03	c : 0.01	= : 0.01	i : 0.01	
^ : 0.85	y : 0.07	c : 0.01	= : 0.01	e : 0.01	d : 0.01	
^ : 0.87	y : 0.11	= : 0.01	
^ : 0.87	y : 0.12	
^ : 0.87	y : 0.12	
^ : 0.87	y : 0.12	
^ : 0.87	y : 0.12	
^ : 0.87	y : 0.12	
^ : 0.87	y : 0.12	
^ : 0.87	y : 0.12	
^ : 0.87	y : 0.12	
^ : 0.87	y : 0.12	
^ : 0.87	y : 0.12	
^ : 0.87	y : 0.12	
^ : 0.87	y : 0.12	
^ : 0.87	y : 0.12	
^ : 0.85	y : 0.09	e : 0.03	g : 0.01	
^ : 0.85	y : 0.05	e : 0.05	g : 0.01	b : 0.01	
^ : 0.70	e : 0.14	c : 0.03	b : 0.03	f : 0.01	y : 0.01	g : 0.01	d : 0.01	
^ : 0.59	e : 0.14	c : 0.07	f : 0.05	d : 0.03	= : 0.01	b : 0.01	g : 0.01	h : 0.01	i : 0.01	
e : 0.22	^ : 0.20	d : 0.16	c : 0.12	f : 0.07	b : 0.07	g : 0.05	= : 0.01	2 : 0.01	h : 0.01	i : 0.01	
d : 0.18	e : 0.18	^ : 0.12	c : 0.09	b : 0.09	f : 0.07	g : 0.05	] : 0.03	= : 0.03	2 : 0.03	h : 0.03	: : 0.01	i : 0.01	
e : 0.20	d : 0.18	c : 0.09	] : 0.09	f : 0.07	b : 0.07	g : 0.05	= : 0.05	^ : 0.03	h : 0.03	i : 0.03	: : 0.01	2 : 0.01	4 : 0.01	

#score	1652.030202973882
#seq	54
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_transcript_m3_run1.txt

#BEAR
cc[dddd!!cccqqqqqqqqccc22dddd33	chrM:14214-14418(-)$1	204	149	180	15.0071
eee"""ffffffqqqqqqqqffffff]eeee	chr4:1240746-1241002(-)$1	256	15	46	15.3566
dddd[gggggggqqqqqqqqggggggg]ddd	chr17:48823804-48824030(+)$1	226	72	103	15.5884
:ccc[bb[ccc[aqqqqqqqqa]cccbb]cc	chr16:89556056-89556283(-)$1	227	58	89	12.4535
ddd[a[ffffffqqqqqqqqffffff]a]dd	chr17:45773171-45773414(+)$1	243	134	165	15.2178
gggggggwwwwwwwwwwwwwwggggggga]c	chr9:35690590-35690872(-)$1	282	168	199	12.2524
ffff[eeeee[aqqqqqqqqa]eeeeeffff	chr2:20550261-20550595(-)$1	334	111	142	15.4968
ccc"""ffffffqqqqqqqqffffff333cc	chr11:108191958-108192242(+)$1	284	90	121	16.7074
%%dddd!!ddddqqqqqqqqdddd22dddd6	chr7:107594041-107594288(-)$1	247	121	152	13.2310
ddd####ddddrrrrrrrrrddddddddccc	chr11:62297246-62297511(-)$1	265	158	189	11.5779
hhhdddd[cccaqqqqqqqqa]ccc]dddd]	chr16:448437-448681(+)$1	244	123	154	14.3753
c[bb[gggggggqqqqqqqqggggggg22bb	chr5:74162264-74162526(-)$1	262	119	150	15.1009
bb[ccc!!ddddqqqqqqqqdddd22ccc]b	chr11:70962906-70963135(-)$1	229	92	123	15.4130
dd"""gggggggqqqqqqqqgggggggdddd	chr2:44065358-44065645(-)$1	287	217	248	16.0244
bbccc"""ddddqqqqqqqqdddd333ccc2	chr7:127341175-127341411(+)$1	236	131	162	16.2013
eeeiiiiiiiiiqqqqqqqqiiiiiiiiigg	chr11:3013196-3013461(-)$1	265	162	193	15.5035
cc[dddd!!cccqqqqqqqqccc22dddd33	chrM:14220-14421(-)$1	201	152	183	15.0071
[gggggggddddqqqqqqqqdddd22ggggg	chr16:18887478-18887750(-)$1	272	220	251	15.9791
Eeeeee!!ddddqqqqqqqqdddd4444eee	chr1:160209636-160209976(-)$1	340	103	134	14.6221
cc[a[ffffffrrrrrrrrrffffff4444a	chr8:145016327-145016587(-)$1	260	186	217	11.8493
fffff!!eeeeeqqqqqqqqeeeee]fffff	chr14:54422771-54423060(-)$1	289	237	268	15.3621
ff"""gggggggqqqqqqqqggggggg333f	chr8:103372735-103372980(-)$1	245	70	101	16.9405
ffff!!ffffffqqqqqqqqfffffffffff	chr14:102182444-102182705(-)$1	261	11	42	15.0727
[ccc[eeeee[aqqqqqqqqa]eeeeecccf	chr5:134263346-134263561(+)$1	215	143	174	16.2386
FFFF:gggggggqqqqqqqqgggggggdddd	chr11:18034120-18034395(-)$1	275	63	94	12.7861
f[ccc####cccqqqqqqqqccc22ccc]ff	chr19:35491781-35492052(+)$1	271	229	260	15.8502
d"""gggggggwwwwwwwwwwwwwwgggggg	chr4:83348506-83348757(-)$1	251	67	98	12.9415
ddeeeee[ddddqqqqqqqqddddeeeee]d	chr14:31604202-31604458(-)$1	256	210	241	14.9313
=======ccc[aqqqqqqqqa]ccc]=====	chr19:5129156-5129421(+)$1	265	168	199	16.7578
a[ccc!!a[cccqqqqqqqqccca22ccc]a	chr2:3318634-3318911(-)$1	277	105	136	16.1561
ggggggeeeeesssssssssseeeee22ggg	chr5:134260118-134260335(+)$1	217	40	71	11.1915
iiiiiii[ddddqqqqqqqqdddd]iiiiii	chr7:139478031-139478311(+)$1	280	119	150	16.4071
c"""bb!!ddddqqqqqqqqddddbb]ccc]	chr9:710782-711044(+)$1	262	202	233	15.4545
[bb####ddddrrrrrrrrrdddd4444bbe	chr6:144814486-144814692(+)$1	206	116	147	11.5954
ddd!!eeeeewwwwwwwwwwwwwweeeeedd	chr2:120189534-120189793(+)$1	259	160	191	12.0894
ddd!!eeeeewwwwwwwwwwwwwweeeee22	chr19:42757428-42757707(-)$1	279	7	38	11.9343
dddd!!ffffffrrrrrrrrrffffff333d	chr12:26839363-26839593(-)$1	230	71	102	11.6764
d:ccc[bbddddqqqqqqqqdddd]bb]ccc	chr21:27484217-27484506(-)$1	289	147	178	13.9358
ffff[aeeeeesssssssssseeeee]a]ff	chr1:19490204-19490419(-)$1	215	87	118	11.3342
[dddd"""ddddqqqqqqqqdddd333dddd	chr5:145557026-145557290(-)$1	264	186	217	15.9055
c####gggggggqqqqqqqqgggggggccc]	chr18:46066863-46067158(+)$1	295	79	110	16.5565
gggggggggggwwwwwwwwwwwwwwgggggg	chr10:21823473-21823713(+)$1	240	41	72	12.7305
###eeeee!!bbqqqqqqqqbb22eeeee]h	chr6:15248997-15249294(+)$1	297	135	166	13.4568
+===========qqqqqqqq===========	chr6:144811964-144812190(+)$1	226	159	190	16.2672
=$$$$$ffffffqqqqqqqqffffff333==	chr1:35652704-35652936(-)$1	232	173	204	15.6293
fbb"""ffffffqqqqqqqqffffffbb]ff	chr17:75428759-75429003(+)$1	244	27	58	14.9550
ccc####eeeeeqqqqqqqqeeeee4444cc	chr9:137256016-137256270(+)$1	254	43	74	16.9851
ff[a!!eeeeeaqqqqqqqqa]eeeee7777	chr19:879115-879384(-)$1	269	7	38	14.4671
i==========ssssssssss==========	chr5:93905065-93905322(-)$1	257	211	242	12.3775
[ccc"""bb[bbqqqqqqqqbb22bb333cc	chr15:25321947-25322241(+)$1	294	174	205	14.5739
:ccc!!eeeeerrrrrrrrreeeee4444cc	chr9:137251286-137251553(+)$1	267	75	106	11.8784
ffffff!!ddddrrrrrrrrrddddffffff	chr7:63565915-63566139(+)$1	224	36	67	10.8640
lffffffeeeeeqqqqqqqqeeeee:ggggg	chr19:10221639-10221943(+)$1	304	245	276	13.6544
iii$$$$$ddddqqqqqqqqddddiiiiiii	chr17:75398798-75399060(+)$1	262	22	53	15.8590

#otherMatches

#Seq PSSM
CGGGAGGAUCCUAUUGGUGCGGGGGCUUUGU	chrM:14214-14418(-)$1	204	149	180	15.0071
CUUGACCAGGGCAGCUGUUAGUUCUGAGAGG	chr4:1240746-1241002(-)$1	256	15	46	15.3566
UUGCCUUUUGGUUUUAAAUUAUUAAGAAGUA	chr17:48823804-48824030(+)$1	226	72	103	15.5884
ggccgUGAGAGGCGGACAGGGGGCUCCGGGG	chr16:89556056-89556283(-)$1	227	58	89	12.4535
GGAGUCCCUGCUGAGCUCGGGGCAGGAAGUU	chr17:45773171-45773414(+)$1	243	134	165	15.2178
CCGCGUGGAAAAUAUGCGGGGCACGUGGGGG	chr9:35690590-35690872(-)$1	282	168	199	12.2524
UGGUAGGUGGAGAAAGAAGACAUUGCCGCCA	chr2:20550261-20550595(-)$1	334	111	142	15.4968
GUGUAAGCGCAGCCUUGAGUCUGUGUAUUCG	chr11:108191958-108192242(+)$1	284	90	121	16.7074
UUUGGCAAUCCAUCAGAAGUUGGGGGGUCGU	chr7:107594041-107594288(-)$1	247	121	152	13.2310
GGUAAAAAUGCCCAAGUUCAGCAUGCCUGGC	chr11:62297246-62297511(-)$1	265	158	189	11.5779
AGGCCACUGAGCUGGGCUGUGCCUCUGUGGA	chr16:448437-448681(+)$1	244	123	154	14.3753
CGAGGCGGGGGCCGCGUGACGCCCCCGGGCU	chr5:74162264-74162526(-)$1	262	119	150	15.1009
GCCCGCCAGCCCUAGGACCCGGGCCAGCGAG	chr11:70962906-70963135(-)$1	229	92	123	15.4130
CAGUGUCUACGGCCUGCCCUCUGUGGAUGGG	chr2:44065358-44065645(-)$1	287	217	248	16.0244
CCGGGAUCUCAAGUAUACCAUUGAAAACCCA	chr7:127341175-127341411(+)$1	236	131	162	16.2013
cuggggcuuggggccuggagcccgggccugg	chr11:3013196-3013461(-)$1	265	162	193	15.5035
CGGGAGGAUCCUAUUGGUGCGGGGGCUUUGU	chrM:14220-14421(-)$1	201	152	183	15.0071
CAAUGUAGACAAUGCAAAAUUUGUAGUUAUA	chr16:18887478-18887750(-)$1	272	220	251	15.9791
CAGCCUCGGCGCCGUGUACAGCGCAAGCGGG	chr1:160209636-160209976(-)$1	340	103	134	14.6221
AAGGCGGGGUGAUGUUCCCCUACCCCCAUUU	chr8:145016327-145016587(-)$1	260	186	217	11.8493
GCAGGUUCUGCGGUAGAGAGCGCAGUCCUGC	chr14:54422771-54423060(-)$1	289	237	268	15.3621
GUUUUCUUUGCUUUUAGGAUGGUAGAGUUUG	chr8:103372735-103372980(-)$1	245	70	101	16.9405
CAGCAGUGGAGGGGAUGCAGCCUCCAGUUGG	chr14:102182444-102182705(-)$1	261	11	42	15.0727
UGCCAUGAUUGUGAGGGGCAGGAGUCAGGUA	chr5:134263346-134263561(+)$1	215	143	174	16.2386
gGCGGGCGGGGAAGGAAGGGUCUUCGCGGUC	chr11:18034120-18034395(-)$1	275	63	94	12.7861
UGUGCUUCCGACUGUGAAUUGUCUUGCAAGU	chr19:35491781-35492052(+)$1	271	229	260	15.8502
ACAAAAACAAAUGAAAGAAGAGGAUUUUGUU	chr4:83348506-83348757(-)$1	251	67	98	12.9415
GUUUGCCAUAGAUCUGGGUCUCUGGGUGAUA	chr14:31604202-31604458(-)$1	256	210	241	14.9313
GACCCUUACUGGGGUCAGUGUGGGUCAAGGG	chr19:5129156-5129421(+)$1	265	168	199	16.7578
ugguggGGACAUGUGAGUAAGUGCAGCACGA	chr2:3318634-3318911(-)$1	277	105	136	16.1561
UAAAUUUUAAUAGUGUGGGAAGUUGAAUAAU	chr5:134260118-134260335(+)$1	217	40	71	11.1915
GCGUGUGUGCCCAGGUGCGAGGGUUCGCGCG	chr7:139478031-139478311(+)$1	280	119	150	16.4071
CCCAGAACCCAGGACCACAUCUGGUCAGCAA	chr9:710782-711044(+)$1	262	202	233	15.4545
CAGCCCCACAGCUCAucucucugucucucuc	chr6:144814486-144814692(+)$1	206	116	147	11.5954
UGCCUGCCUCACAUAGCUGCUCCCGAGGCGC	chr2:120189534-120189793(+)$1	259	160	191	12.0894
AGGCCGAGGCACCCAGACAACCUCGCUUCAU	chr19:42757428-42757707(-)$1	279	7	38	11.9343
GGGAGAAGAUCAUGUAUACUUUGGUUUCAGU	chr12:26839363-26839593(-)$1	230	71	102	11.6764
AGAUCCAUCAGGGACCAAAACCUGCAUUGAU	chr21:27484217-27484506(-)$1	289	147	178	13.9358
CUUUGGGACAGCAAGAAAUACCUGUCACAGA	chr1:19490204-19490419(-)$1	215	87	118	11.3342
UAAUAGUUUGUGAAGUUCUGCACAUUGUAUU	chr5:145557026-145557290(-)$1	264	186	217	15.9055
CGGAGUUUUCAGGGUUGGGGCUGGGGGGUGU	chr18:46066863-46067158(+)$1	295	79	110	16.5565
GGGGGAAGCACUAAUCGGCUUGCAUGUGUUU	chr10:21823473-21823713(+)$1	240	41	72	12.7305
ggaagaggaggAAGAUGCGCUCGGCCUCUGC	chr6:15248997-15249294(+)$1	297	135	166	13.4568
GCAGCGCAUGCUGGACUGCAAGCGUGUGCUG	chr6:144811964-144812190(+)$1	226	159	190	16.2672
GUAUCCUGGUGGAGUUGUAACCACUAUUUUU	chr1:35652704-35652936(-)$1	232	173	204	15.6293
ACUCACGCAGCAUUAGCUUUUGCUGCAGUUG	chr17:75428759-75429003(+)$1	244	27	58	14.9550
GGUCCAGGCAUCAGGGAUGAGGUGCAAAAGC	chr9:137256016-137256270(+)$1	254	43	74	16.9851
CUGGGGCUGGUGGGCAUUGACAACCAGGGGA	chr19:879115-879384(-)$1	269	7	38	14.4671
UCUAAGCCUUCUCCUAUUUAUGGGGGCUUAG	chr5:93905065-93905322(-)$1	257	211	242	12.3775
UGGAUCCGUCGUGAAUGUAAGCAAGCCCUUC	chr15:25321947-25322241(+)$1	294	174	205	14.5739
UUCCUGGGGCACUGUGGCUUUGCCUGCUUGG	chr9:137251286-137251553(+)$1	267	75	106	11.8784
AAUAGAAAGCAUUUGGUAAAUAUGUUCUAUU	chr7:63565915-63566139(+)$1	224	36	67	10.8640
UUGGGGCCCGAGAUGUGGCCCUCGGUUUCCU	chr19:10221639-10221943(+)$1	304	245	276	13.6544
UAAUGGGGGGCCUGGUUGCUGGCUUUGCCAC	chr17:75398798-75399060(+)$1	262	22	53	15.8590

#DB
((.((((..(((........)))..))))..	chrM:14214-14418(-)$1	1	149	180	15.0071
(((...((((((........)))))).))))	chr4:1240746-1241002(-)$1	1	15	46	15.3566
((((.(((((((........))))))).)))	chr17:48823804-48824030(+)$1	1	72	103	15.5884
.(((.((.(((.(........).))))).))	chr16:89556056-89556283(-)$1	1	58	89	12.4535
(((.(.((((((........)))))).).))	chr17:45773171-45773414(+)$1	1	134	165	15.2178
(((((((..............)))))))).)	chr9:35690590-35690872(-)$1	1	168	199	12.2524
((((.(((((.(........).)))))))))	chr2:20550261-20550595(-)$1	1	111	142	15.4968
(((...((((((........))))))...))	chr11:108191958-108192242(+)$1	1	90	121	16.7074
..((((..((((........))))..)))).	chr7:107594041-107594288(-)$1	1	121	152	13.2310
(((....((((.........)))))))))))	chr11:62297246-62297511(-)$1	1	158	189	11.5779
(((((((.((((........).))).)))).	chr16:448437-448681(+)$1	1	123	154	14.3753
(.((.(((((((........)))))))..))	chr5:74162264-74162526(-)$1	1	119	150	15.1009
((.(((..((((........))))..))).)	chr11:70962906-70963135(-)$1	1	92	123	15.4130
((...(((((((........)))))))))))	chr2:44065358-44065645(-)$1	1	217	248	16.0244
(((((...((((........))))...))).	chr7:127341175-127341411(+)$1	1	131	162	16.2013
)))(((((((((........)))))))))((	chr11:3013196-3013461(-)$1	1	162	193	15.5035
((.((((..(((........)))..))))..	chrM:14220-14421(-)$1	1	152	183	15.0071
.(((((((((((........))))..)))))	chr16:18887478-18887750(-)$1	1	220	251	15.9791
((((((..((((........))))....)))	chr1:160209636-160209976(-)$1	1	103	134	14.6221
((.(.((((((.........))))))....)	chr8:145016327-145016587(-)$1	1	186	217	11.8493
(((((..(((((........))))).)))))	chr14:54422771-54423060(-)$1	1	237	268	15.3621
((...(((((((........)))))))...)	chr8:103372735-103372980(-)$1	1	70	101	16.9405
((((..((((((........)))))))))))	chr14:102182444-102182705(-)$1	1	11	42	15.0727
.(((.(((((.(........).)))))))))	chr5:134263346-134263561(+)$1	1	143	174	16.2386
((((.(((((((........)))))))((((	chr11:18034120-18034395(-)$1	1	63	94	12.7861
(.(((....(((........)))..))).))	chr19:35491781-35492052(+)$1	1	229	260	15.8502
(...(((((((..............))))))	chr4:83348506-83348757(-)$1	1	67	98	12.9415
(((((((.((((........))))))))).)	chr14:31604202-31604458(-)$1	1	210	241	14.9313
((((((((((.(........).))).)))))	chr19:5129156-5129421(+)$1	1	168	199	16.7578
(.(((..(.(((........))))..))).)	chr2:3318634-3318911(-)$1	1	105	136	16.1561
(((((((((((..........)))))..)))	chr5:134260118-134260335(+)$1	1	40	71	11.1915
(((((((.((((........)))).))))))	chr7:139478031-139478311(+)$1	1	119	150	16.4071
(...((..((((........)))))).))).	chr9:710782-711044(+)$1	1	202	233	15.4545
.((....((((.........))))....)))	chr6:144814486-144814692(+)$1	1	116	147	11.5954
(((..(((((..............)))))))	chr2:120189534-120189793(+)$1	1	160	191	12.0894
(((..(((((..............)))))..	chr19:42757428-42757707(-)$1	1	7	38	11.9343
((((..((((((.........))))))...)	chr12:26839363-26839593(-)$1	1	71	102	11.6764
).(((.((((((........)))).)).)))	chr21:27484217-27484506(-)$1	1	147	178	13.9358
((((.((((((..........))))).).))	chr1:19490204-19490419(-)$1	1	87	118	11.3342
.((((...((((........))))...))))	chr5:145557026-145557290(-)$1	1	186	217	15.9055
(....(((((((........)))))))))).	chr18:46066863-46067158(+)$1	1	79	110	16.5565
(((((((((((..............))))))	chr10:21823473-21823713(+)$1	1	41	72	12.7305
...(((((..((........))..))))).)	chr6:15248997-15249294(+)$1	1	135	166	13.4568
.(((((((((((........)))))))))))	chr6:144811964-144812190(+)$1	1	159	190	16.2672
(.....((((((........))))))...))	chr1:35652704-35652936(-)$1	1	173	204	15.6293
(((...((((((........)))))))).))	chr17:75428759-75429003(+)$1	1	27	58	14.9550
(((....(((((........)))))....))	chr9:137256016-137256270(+)$1	1	43	74	16.9851
((.(..((((((........).)))))....	chr19:879115-879384(-)$1	1	7	38	14.4671
)((((((((((..........))))))))))	chr5:93905065-93905322(-)$1	1	211	242	12.3775
.(((...((.((........))..))...))	chr15:25321947-25322241(+)$1	1	174	205	14.5739
.(((..(((((.........)))))....))	chr9:137251286-137251553(+)$1	1	75	106	11.8784
((((((..((((.........))))))))))	chr7:63565915-63566139(+)$1	1	36	67	10.8640
.))))))(((((........))))).(((((	chr19:10221639-10221943(+)$1	1	245	276	13.6544
(((.....((((........)))))))))))	chr17:75398798-75399060(+)$1	1	22	53	15.8590

#PSSM
d : 0.18	f : 0.16	c : 0.14	[ : 0.09	g : 0.05	i : 0.05	e : 0.03	: : 0.03	b : 0.03	= : 0.03	% : 0.01	h : 0.01	E : 0.01	F : 0.01	a : 0.01	# : 0.01	+ : 0.01	l : 0.01	
c : 0.16	d : 0.16	f : 0.14	g : 0.07	b : 0.07	e : 0.05	[ : 0.05	= : 0.05	" : 0.03	i : 0.03	# : 0.03	% : 0.01	h : 0.01	F : 0.01	: : 0.01	$ : 0.01	
c : 0.18	d : 0.14	f : 0.11	[ : 0.09	e : 0.07	g : 0.07	" : 0.07	b : 0.05	= : 0.05	i : 0.03	# : 0.03	h : 0.01	F : 0.01	$ : 0.01	
c : 0.16	d : 0.12	" : 0.12	f : 0.11	g : 0.07	# : 0.07	e : 0.05	= : 0.05	i : 0.03	a : 0.03	! : 0.03	$ : 0.03	[ : 0.01	b : 0.01	F : 0.01	
[ : 0.12	" : 0.11	! : 0.11	d : 0.09	g : 0.09	c : 0.09	# : 0.07	e : 0.05	f : 0.05	= : 0.05	i : 0.03	$ : 0.03	a : 0.01	: : 0.01	b : 0.01	
g : 0.20	e : 0.12	" : 0.11	! : 0.11	d : 0.07	# : 0.07	f : 0.05	= : 0.05	b : 0.03	[ : 0.03	i : 0.03	$ : 0.03	c : 0.01	a : 0.01	
g : 0.18	e : 0.18	f : 0.16	! : 0.12	# : 0.07	d : 0.05	" : 0.05	= : 0.05	b : 0.03	i : 0.03	$ : 0.01	
e : 0.22	g : 0.16	f : 0.14	! : 0.12	[ : 0.07	d : 0.03	" : 0.03	b : 0.03	= : 0.03	w : 0.01	i : 0.01	# : 0.01	c : 0.01	a : 0.01	$ : 0.01	
d : 0.25	e : 0.20	f : 0.14	g : 0.14	! : 0.05	c : 0.05	= : 0.03	w : 0.01	i : 0.01	# : 0.01	[ : 0.01	b : 0.01	
d : 0.25	e : 0.20	f : 0.14	g : 0.14	c : 0.12	= : 0.03	w : 0.01	i : 0.01	! : 0.01	[ : 0.01	
d : 0.25	f : 0.14	g : 0.14	e : 0.12	c : 0.11	w : 0.05	[ : 0.05	b : 0.03	= : 0.03	i : 0.01	
d : 0.22	f : 0.12	g : 0.11	w : 0.09	a : 0.09	c : 0.07	r : 0.07	e : 0.05	s : 0.05	b : 0.03	[ : 0.01	i : 0.01	= : 0.01	
q : 0.72	r : 0.11	w : 0.09	s : 0.05	a : 0.01	
q : 0.74	r : 0.11	w : 0.09	s : 0.05	
q : 0.74	r : 0.11	w : 0.09	s : 0.05	
q : 0.74	r : 0.11	w : 0.09	s : 0.05	
q : 0.74	r : 0.11	w : 0.09	s : 0.05	
q : 0.74	r : 0.11	w : 0.09	s : 0.05	
q : 0.74	r : 0.11	w : 0.09	s : 0.05	
q : 0.74	r : 0.11	w : 0.09	s : 0.05	
d : 0.24	f : 0.12	g : 0.11	w : 0.09	a : 0.09	c : 0.07	e : 0.07	s : 0.05	r : 0.03	b : 0.03	q : 0.01	i : 0.01	= : 0.01	
d : 0.25	f : 0.14	g : 0.12	e : 0.11	] : 0.09	c : 0.07	w : 0.07	b : 0.03	= : 0.03	a : 0.01	i : 0.01	
d : 0.25	e : 0.16	f : 0.14	g : 0.12	c : 0.11	w : 0.07	2 : 0.03	= : 0.03	] : 0.01	i : 0.01	
d : 0.25	e : 0.16	f : 0.14	g : 0.12	2 : 0.09	w : 0.07	c : 0.05	= : 0.03	i : 0.01	a : 0.01	
e : 0.24	f : 0.14	2 : 0.12	g : 0.12	c : 0.05	d : 0.03	3 : 0.03	i : 0.03	4 : 0.03	w : 0.03	] : 0.03	b : 0.03	= : 0.03	
f : 0.16	g : 0.16	e : 0.16	2 : 0.07	4 : 0.07	d : 0.05	] : 0.05	i : 0.05	b : 0.05	c : 0.03	3 : 0.03	= : 0.03	: : 0.01	
g : 0.20	e : 0.12	d : 0.09	3 : 0.09	4 : 0.09	] : 0.07	f : 0.07	b : 0.05	c : 0.05	i : 0.05	= : 0.05	2 : 0.01	
d : 0.14	c : 0.12	e : 0.09	g : 0.09	3 : 0.09	4 : 0.09	f : 0.07	i : 0.05	= : 0.05	] : 0.03	b : 0.03	a : 0.03	2 : 0.03	7 : 0.01	
d : 0.14	c : 0.14	e : 0.11	] : 0.09	3 : 0.09	g : 0.09	f : 0.07	i : 0.05	4 : 0.05	= : 0.05	a : 0.01	2 : 0.01	b : 0.01	7 : 0.01	
c : 0.20	d : 0.14	f : 0.12	g : 0.11	] : 0.09	3 : 0.07	= : 0.07	e : 0.03	b : 0.03	i : 0.03	4 : 0.01	2 : 0.01	7 : 0.01	
f : 0.16	d : 0.14	c : 0.14	g : 0.11	= : 0.07	e : 0.05	] : 0.05	3 : 0.03	b : 0.03	2 : 0.03	a : 0.03	i : 0.03	6 : 0.01	h : 0.01	7 : 0.01	

#score	777.7829068437495
#seq	54
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF169SMQ_AGGF1_transcript_m3_run1.txt

#BEAR
dd[bbuuuuuuuuuuuubb]d	chr22:48037637-48037888(+)$1	251	142	163	21.7125
eeeeeuuuuuuuuuuuueeee	chr22:48024147-48024396(-)$1	249	178	199	23.1284
fffffftttttttttttffff	chr8:124198379-124198701(+)$1	322	240	261	21.0629
:cccvvvvvvvvvvvvvccc:	chr12:131501950-131502244(+)$1	294	53	74	21.4155
eeeeettttttttttteeeee	chr8:66662537-66662799(-)$1	262	33	54	21.3801
hhhhhvvvvvvvvvvvvvhhh	chr9:135252337-135252702(-)$1	365	125	146	21.2436
fffffftttttttttttffff	chr2:234371903-234372138(+)$1	235	202	223	21.0629
[cccvvvvvvvvvvvvvccc]	chr18:75696948-75697152(-)$1	204	132	153	23.2815
ffffwwwwwwwwwwwwwwfff	chr16:88982319-88982538(-)$1	219	164	185	21.8457
ffffwwwwwwwwwwwwwwfff	chr8:130380314-130380553(-)$1	239	167	188	21.8457
fffffftttttttttttffff	chr13:114882976-114883222(-)$1	246	56	77	21.0629
::cccuuuuuuuuuuuuccc:	chr1:1453669-1453956(+)$1	287	237	258	20.5290
eeeeeuuuuuuuuuuuueeee	chr7:696740-697052(-)$1	312	25	46	23.1284
Ddddduuuuuuuuuuuudddd	chr7:91757478-91757729(-)$1	251	141	162	21.6347
#ddddvvvvvvvvvvvvvddd	chr10:7420650-7420941(-)$1	291	112	133	22.5292
::cccuuuuuuuuuuuuccc:	chr4:7029111-7029383(+)$1	272	45	66	20.5290
[cccvvvvvvvvvvvvvccc]	chr11:28137395-28137695(+)$1	300	130	151	23.2815
ggggguuuuuuuuuuuugggg	chr22:38520918-38521232(-)$1	314	16	37	22.8509
##ddddtttttttttttdddd	chr16:85216454-85216731(+)$1	277	62	83	20.8429
((cccuuuuuuuuuuuuccc>	chr17:7313562-7313850(+)$1	288	16	37	21.8335
fffffuuuuuuuuuuuuffff	chr22:48042885-48043120(+)$1	235	83	104	22.6272
:cccwwwwwwwwwwwwwwccc	chr19:14045729-14046012(-)$1	283	60	81	21.4421
c[cccuuuuuuuuuuuuccc]	chr22:49852029-49852273(-)$1	244	131	152	23.3810
====wwwwwwwwwwwwww===	chr4:7029812-7030091(+)$1	279	165	186	21.9862
c[cccuuuuuuuuuuuuccc]	chr22:49852116-49852343(-)$1	227	201	222	23.3810
b[cccvvvvvvvvvvvvvccc	chr22:50034756-50034978(-)$1	222	65	86	22.9182
:dddduuuuuuuuuuuudddd	chr3:48584707-48584957(-)$1	250	74	95	21.7789
d!!avvvvvvvvvvvvva22d	chr22:48041329-48041544(+)$1	215	149	170	22.2511
d!!ccctttttttttttccc2	chr22:47399477-47399836(+)$1	359	215	236	21.5743
ggggggtttttttttttgggg	chr19:1388951-1389200(+)$1	249	5	26	21.1189
fffffftttttttttttffff	chr19:49676134-49676378(+)$1	244	67	88	21.0629
!eeeeettttttttttteeee	chr12:76448698-76448930(-)$1	232	83	104	21.5979
eeeeeuuuuuuuuuuuueeee	chr7:784978-785249(+)$1	271	225	246	23.1284
ddddwwwwwwwwwwwwwwddd	chr21:46899025-46899250(+)$1	225	194	215	21.8141
ddddwwwwwwwwwwwwwwddd	chrX:113079327-113079635(-)$1	308	153	174	21.8141
fffffuuuuuuuuuuuuffff	chr20:62579813-62580079(-)$1	266	166	187	22.6272
"dddduuuuuuuuuuuudddd	chr7:1928270-1928512(-)$1	242	138	159	22.5793
[dddduuuuuuuuuuuudddd	chr21:45164014-45164254(+)$1	240	89	110	22.6611
eeeeeuuuuuuuuuuuueeee	chr12:124818457-124818762(-)$1	305	45	66	23.1284
eeeeeuuuuuuuuuuuueeee	chr10:120811844-120812097(-)$1	253	18	39	23.1284
:cccwwwwwwwwwwwwwwccc	chr2:127424259-127424508(+)$1	249	75	96	21.4421
ggggwwwwwwwwwwwwwwggg	chr10:72490733-72491016(+)$1	283	251	272	22.0893
fffffuuuuuuuuuuuuffff	chr1:226046661-226046929(-)$1	268	205	226	22.6272
dddyyyyyyyyyyyyyyyydd	chr16:67209829-67210085(-)$1	256	206	227	19.4429
:cccwwwwwwwwwwwwwwccc	chr2:127424308-127424536(+)$1	228	26	47	21.4421
cccccvvvvvvvvvvvvvccc	chr12:123995733-123996007(-)$1	274	162	183	23.0886
eeeeeuuuuuuuuuuuueeee	chr12:113755313-113755544(-)$1	231	71	92	23.1284
d!!avvvvvvvvvvvvva22d	chr22:48041317-48041529(+)$1	212	161	182	22.2511
ddddvvvvvvvvvvvvvdddd	chr15:77916642-77916905(-)$1	263	163	184	22.5469
fffffuuuuuuuuuuuuffff	chr13:114560779-114561007(-)$1	228	57	78	22.6272
!!cccuuuuuuuuuuuuccc2	chr9:96411747-96412005(+)$1	258	25	46	23.2152
eeeeettttttttttteeeee	chr3:47899911-47900178(-)$1	267	105	126	21.3801
fffffuuuuuuuuuuuuffff	chr15:88150628-88150893(-)$1	265	100	121	22.6272
ffffwwwwwwwwwwwwwwfff	chr7:695847-696141(-)$1	294	144	165	21.8457
iiiiiuuuuuuuuuuuuiiii	chr3:48583638-48583873(-)$1	235	185	206	22.6335
bb!!awwwwwwwwwwwwwwa2	chr7:158574868-158575078(-)$1	210	112	133	20.7459
hhhhwwwwwwwwwwwwwwhhh	chr16:11557165-11557400(-)$1	235	28	49	20.7945
eeeeeuuuuuuuuuuuueeee	chr16:11265442-11265685(+)$1	243	60	81	23.1284
eeeeevvvvvvvvvvvvveee	chr22:50034944-50035172(-)$1	228	25	46	23.0213
eeeeettttttttttteeeee	chr21:44256127-44256358(-)$1	231	52	73	21.3801
eeeewwwwwwwwwwwwwweee	chr8:145056001-145056342(-)$1	341	213	234	22.2618
[cccvvvvvvvvvvvvvccc]	chr2:20536356-20536609(-)$1	253	131	152	23.2815
eeeeettttttttttteeeee	chr6:2377335-2377582(+)$1	247	192	213	21.3801
cccwwwwwwwwwwwwwwcccG	chrX:3740870-3741101(-)$1	231	21	42	21.2124
#dddduuuuuuuuuuuudddd	chr1:1415277-1415504(+)$1	227	30	51	22.5716
eeeeeuuuuuuuuuuuueeee	chr22:50039073-50039286(-)$1	213	63	84	23.1284
dddyyyyyyyyyyyyyyyydd	chr16:89647039-89647259(+)$1	220	140	161	19.4429
ggg[auuuuuuuuuuuua]gg	chr10:18853118-18853351(-)$1	233	190	211	23.1348

#otherMatches

#Seq PSSM
ggaugcacacaaagaaacaac	chr22:48037637-48037888(+)$1	251	142	163	21.7125
acaugcacacauuaacacaug	chr22:48024147-48024396(-)$1	249	178	199	23.1284
GGGGAAAUAUAUUUGAAUUCU	chr8:124198379-124198701(+)$1	322	240	261	21.0629
agacacacacacacccaGUCC	chr12:131501950-131502244(+)$1	294	53	74	21.4155
UGUCUcacacacacacagaca	chr8:66662537-66662799(-)$1	262	33	54	21.3801
augcacucacacaccacaugc	chr9:135252337-135252702(-)$1	365	125	146	21.2436
GCAUGUCCUCACUGCACGCAU	chr2:234371903-234372138(+)$1	235	202	223	21.0629
auguaaacacacaauacacaa	chr18:75696948-75697152(-)$1	204	132	153	23.2815
ugcacccacguacacucaugc	chr16:88982319-88982538(-)$1	219	164	185	21.8457
ACUGAAAGAUAUGCAAGCUAG	chr8:130380314-130380553(-)$1	239	167	188	21.8457
augcaccccucacacacgugc	chr13:114882976-114883222(-)$1	246	56	77	21.0629
accccacacacacauacgggc	chr1:1453669-1453956(+)$1	287	237	258	20.5290
augcacacauucauucaugca	chr7:696740-697052(-)$1	312	25	46	23.1284
CUUCCUGUACAAAUAAUGGAA	chr7:91757478-91757729(-)$1	251	141	162	21.6347
CAGGAAAUCCCAACAGCCUCC	chr10:7420650-7420941(-)$1	291	112	133	22.5292
cagucaccccacacauagaca	chr4:7029111-7029383(+)$1	272	45	66	20.5290
uuggauuuaccagugcaccac	chr11:28137395-28137695(+)$1	300	130	151	23.2815
gcaugcacacacauacacaug	chr22:38520918-38521232(-)$1	314	16	37	22.8509
CUUGCACCUCCUUCUCCUGCA	chr16:85216454-85216731(+)$1	277	62	83	20.8429
CCCUGUAUCCCCCAUCCCAGC	chr17:7313562-7313850(+)$1	288	16	37	21.8335
uucuacauuuuauucauuaga	chr22:48042885-48043120(+)$1	235	83	104	22.6272
acagacucacauacacaccug	chr19:14045729-14046012(-)$1	283	60	81	21.4421
gacacacacauacaacaguga	chr22:49852029-49852273(-)$1	244	131	152	23.3810
UAAACCCAGAUCAGCCAUUUU	chr4:7029812-7030091(+)$1	279	165	186	21.9862
gacacacacauacaacaguga	chr22:49852116-49852343(-)$1	227	201	222	23.3810
GAGCAGACAUGAUGACAGUGC	chr22:50034756-50034978(-)$1	222	65	86	22.9182
acaggcacacucauacuccug	chr3:48584707-48584957(-)$1	250	74	95	21.7789
ggacuucugGacucuauggac	chr22:48041329-48041544(+)$1	215	149	170	22.2511
GCCUGUACACACCCUacgcac	chr22:47399477-47399836(+)$1	359	215	236	21.5743
GGCCCUCCUCGAGCGCCAGGG	chr19:1388951-1389200(+)$1	249	5	26	21.1189
GACAAUUCCAUCCACUUAUUG	chr19:49676134-49676378(+)$1	244	67	88	21.0629
GCACUUGAAAGAUAUUAAAGU	chr12:76448698-76448930(-)$1	232	83	104	21.5979
augugcacacccauauacaca	chr7:784978-785249(+)$1	271	225	246	23.1284
ccacacauuacaccacacgug	chr21:46899025-46899250(+)$1	225	194	215	21.8141
aagaacuccacaaaugacucu	chrX:113079327-113079635(-)$1	308	153	174	21.8141
gccucccuccUCACACCGAGG	chr20:62579813-62580079(-)$1	266	166	187	22.6272
ccaugcacagccacccacaug	chr7:1928270-1928512(-)$1	242	138	159	22.5793
AGUGGGGGGAGGGAGGGUCAC	chr21:45164014-45164254(+)$1	240	89	110	22.6611
ggagacauaggcagcauucuc	chr12:124818457-124818762(-)$1	305	45	66	23.1284
ccugucucuacaaaaaaacag	chr10:120811844-120812097(-)$1	253	18	39	23.1284
augcacgcacacacacaagca	chr2:127424259-127424508(+)$1	249	75	96	21.4421
auguagagacacaaagacaca	chr10:72490733-72491016(+)$1	283	251	272	22.0893
AUUACAAAGUCCUUAUAGUAA	chr1:226046661-226046929(-)$1	268	205	226	22.6272
UGUCUUUGCUCACACCCUCAC	chr16:67209829-67210085(-)$1	256	206	227	19.4429
augcacgcacacacacaagca	chr2:127424308-127424536(+)$1	228	26	47	21.4421
cacagacauacacucacacug	chr12:123995733-123996007(-)$1	274	162	183	23.0886
GGGCCAUUUUCCUUUCAGGCC	chr12:113755313-113755544(-)$1	231	71	92	23.1284
ggacuucugGacucuauggac	chr22:48041317-48041529(+)$1	212	161	182	22.2511
GGCAGACAAUCACACCAUGCC	chr15:77916642-77916905(-)$1	263	163	184	22.5469
GGCCCGGCCUCCUCUGAGGGC	chr13:114560779-114561007(-)$1	228	57	78	22.6272
AAGCCUCCUCUGGUCUUGGCC	chr9:96411747-96412005(+)$1	258	25	46	23.2152
CCCCUCACCUCUCCCAAGGGG	chr3:47899911-47900178(-)$1	267	105	126	21.3801
CAUGUUCACUCACACAUACAU	chr15:88150628-88150893(-)$1	265	100	121	22.6272
gcauccauacauucacccaug	chr7:695847-696141(-)$1	294	144	165	21.8457
GCACACUCACUCAUACCUGUG	chr3:48583638-48583873(-)$1	235	185	206	22.6335
UGUUCUCACACUCAUACUUGU	chr7:158574868-158575078(-)$1	210	112	133	20.7459
uacacacauucauacauCUGu	chr16:11557165-11557400(-)$1	235	28	49	20.7945
CUUGCAAAGAAUAUACAGCGG	chr16:11265442-11265685(+)$1	243	60	81	23.1284
UGGCUUUUACUGUCGCCCAGC	chr22:50034944-50035172(-)$1	228	25	46	23.0213
aguuuaaagacaaaaagaacu	chr21:44256127-44256358(-)$1	231	52	73	21.3801
ugacccucaccacucacuguc	chr8:145056001-145056342(-)$1	341	213	234	22.2618
cuguaacacacacacacacac	chr2:20536356-20536609(-)$1	253	131	152	23.2815
GCCAGAUUCCCCAGCGCUGGC	chr6:2377335-2377582(+)$1	247	192	213	21.3801
GCAUUCACUCACCUUUUUGCA	chrX:3740870-3741101(-)$1	231	21	42	21.2124
augcacaaacacccaccugca	chr1:1415277-1415504(+)$1	227	30	51	22.5716
UCCAUCCCUCAUUGCCCAUGG	chr22:50039073-50039286(-)$1	213	63	84	23.1284
GACACAGAACAUCUCACCCGU	chr16:89647039-89647259(+)$1	220	140	161	19.4429
auagagaguggauggaaugua	chr10:18853118-18853351(-)$1	233	190	211	23.1348

#DB
((.((............)).)	chr22:48037637-48037888(+)$1	1	142	163	21.7125
(((((............))))	chr22:48024147-48024396(-)$1	1	178	199	23.1284
((((((...........))))	chr8:124198379-124198701(+)$1	1	240	261	21.0629
.(((.............))).	chr12:131501950-131502244(+)$1	1	53	74	21.4155
(((((...........)))))	chr8:66662537-66662799(-)$1	1	33	54	21.3801
(((((.............)))	chr9:135252337-135252702(-)$1	1	125	146	21.2436
((((((...........))))	chr2:234371903-234372138(+)$1	1	202	223	21.0629
.(((.............))).	chr18:75696948-75697152(-)$1	1	132	153	23.2815
((((..............)))	chr16:88982319-88982538(-)$1	1	164	185	21.8457
((((..............)))	chr8:130380314-130380553(-)$1	1	167	188	21.8457
((((((...........))))	chr13:114882976-114883222(-)$1	1	56	77	21.0629
..(((............))).	chr1:1453669-1453956(+)$1	1	237	258	20.5290
(((((............))))	chr7:696740-697052(-)$1	1	25	46	23.1284
(((((............))))	chr7:91757478-91757729(-)$1	1	141	162	21.6347
.((((.............)))	chr10:7420650-7420941(-)$1	1	112	133	22.5292
..(((............))).	chr4:7029111-7029383(+)$1	1	45	66	20.5290
.(((.............))).	chr11:28137395-28137695(+)$1	1	130	151	23.2815
(((((............))))	chr22:38520918-38521232(-)$1	1	16	37	22.8509
..((((...........))))	chr16:85216454-85216731(+)$1	1	62	83	20.8429
..(((............))).	chr17:7313562-7313850(+)$1	1	16	37	21.8335
(((((............))))	chr22:48042885-48043120(+)$1	1	83	104	22.6272
.(((..............)))	chr19:14045729-14046012(-)$1	1	60	81	21.4421
(.(((............))).	chr22:49852029-49852273(-)$1	1	131	152	23.3810
((((..............)))	chr4:7029812-7030091(+)$1	1	165	186	21.9862
(.(((............))).	chr22:49852116-49852343(-)$1	1	201	222	23.3810
(.(((.............)))	chr22:50034756-50034978(-)$1	1	65	86	22.9182
.((((............))))	chr3:48584707-48584957(-)$1	1	74	95	21.7789
(..(.............)..)	chr22:48041329-48041544(+)$1	1	149	170	22.2511
(..(((...........))).	chr22:47399477-47399836(+)$1	1	215	236	21.5743
((((((...........))))	chr19:1388951-1389200(+)$1	1	5	26	21.1189
((((((...........))))	chr19:49676134-49676378(+)$1	1	67	88	21.0629
.(((((...........))))	chr12:76448698-76448930(-)$1	1	83	104	21.5979
(((((............))))	chr7:784978-785249(+)$1	1	225	246	23.1284
((((..............)))	chr21:46899025-46899250(+)$1	1	194	215	21.8141
((((..............)))	chrX:113079327-113079635(-)$1	1	153	174	21.8141
(((((............))))	chr20:62579813-62580079(-)$1	1	166	187	22.6272
.((((............))))	chr7:1928270-1928512(-)$1	1	138	159	22.5793
.((((............))))	chr21:45164014-45164254(+)$1	1	89	110	22.6611
(((((............))))	chr12:124818457-124818762(-)$1	1	45	66	23.1284
(((((............))))	chr10:120811844-120812097(-)$1	1	18	39	23.1284
.(((..............)))	chr2:127424259-127424508(+)$1	1	75	96	21.4421
((((..............)))	chr10:72490733-72491016(+)$1	1	251	272	22.0893
(((((............))))	chr1:226046661-226046929(-)$1	1	205	226	22.6272
(((................))	chr16:67209829-67210085(-)$1	1	206	227	19.4429
.(((..............)))	chr2:127424308-127424536(+)$1	1	26	47	21.4421
))(((.............)))	chr12:123995733-123996007(-)$1	1	162	183	23.0886
(((((............))))	chr12:113755313-113755544(-)$1	1	71	92	23.1284
(..(.............)..)	chr22:48041317-48041529(+)$1	1	161	182	22.2511
((((.............))))	chr15:77916642-77916905(-)$1	1	163	184	22.5469
(((((............))))	chr13:114560779-114561007(-)$1	1	57	78	22.6272
..(((............))).	chr9:96411747-96412005(+)$1	1	25	46	23.2152
(((((...........)))))	chr3:47899911-47900178(-)$1	1	105	126	21.3801
(((((............))))	chr15:88150628-88150893(-)$1	1	100	121	22.6272
((((..............)))	chr7:695847-696141(-)$1	1	144	165	21.8457
(((((............))))	chr3:48583638-48583873(-)$1	1	185	206	22.6335
((..(..............).	chr7:158574868-158575078(-)$1	1	112	133	20.7459
((((..............)))	chr16:11557165-11557400(-)$1	1	28	49	20.7945
(((((............))))	chr16:11265442-11265685(+)$1	1	60	81	23.1284
(((((.............)))	chr22:50034944-50035172(-)$1	1	25	46	23.0213
(((((...........)))))	chr21:44256127-44256358(-)$1	1	52	73	21.3801
((((..............)))	chr8:145056001-145056342(-)$1	1	213	234	22.2618
.(((.............))).	chr2:20536356-20536609(-)$1	1	131	152	23.2815
(((((...........)))))	chr6:2377335-2377582(+)$1	1	192	213	21.3801
(((..............)))(	chrX:3740870-3741101(-)$1	1	21	42	21.2124
.((((............))))	chr1:1415277-1415504(+)$1	1	30	51	22.5716
(((((............))))	chr22:50039073-50039286(-)$1	1	63	84	23.1284
(((................))	chr16:89647039-89647259(+)$1	1	140	161	19.4429
(((.(............).))	chr10:18853118-18853351(-)$1	1	190	211	23.1348

#PSSM
e : 0.20	f : 0.17	d : 0.13	: : 0.10	[ : 0.05	g : 0.05	c : 0.05	# : 0.04	h : 0.02	b : 0.02	! : 0.02	D : 0.01	( : 0.01	= : 0.01	" : 0.01	i : 0.01	
e : 0.22	d : 0.17	f : 0.17	c : 0.13	g : 0.05	! : 0.05	[ : 0.04	h : 0.02	: : 0.02	# : 0.01	( : 0.01	= : 0.01	i : 0.01	b : 0.01	
c : 0.23	e : 0.22	f : 0.17	d : 0.17	g : 0.05	! : 0.05	h : 0.02	[ : 0.01	= : 0.01	i : 0.01	
c : 0.23	e : 0.22	f : 0.17	d : 0.14	g : 0.04	h : 0.02	a : 0.02	y : 0.02	b : 0.01	= : 0.01	i : 0.01	! : 0.01	w : 0.01	[ : 0.01	
e : 0.20	w : 0.19	f : 0.13	c : 0.13	v : 0.10	d : 0.10	g : 0.02	y : 0.02	a : 0.02	b : 0.01	h : 0.01	i : 0.01	
u : 0.41	w : 0.20	v : 0.17	f : 0.05	t : 0.05	y : 0.02	d : 0.01	c : 0.01	g : 0.01	e : 0.01	
u : 0.41	w : 0.20	t : 0.17	v : 0.17	y : 0.02	
u : 0.41	w : 0.20	t : 0.17	v : 0.17	y : 0.02	
u : 0.41	w : 0.20	t : 0.17	v : 0.17	y : 0.02	
u : 0.41	w : 0.20	t : 0.17	v : 0.17	y : 0.02	
u : 0.41	w : 0.20	t : 0.17	v : 0.17	y : 0.02	
u : 0.41	w : 0.20	t : 0.17	v : 0.17	y : 0.02	
u : 0.41	w : 0.20	t : 0.17	v : 0.17	y : 0.02	
u : 0.41	w : 0.20	t : 0.17	v : 0.17	y : 0.02	
u : 0.41	w : 0.20	t : 0.17	v : 0.17	y : 0.02	
u : 0.41	w : 0.20	t : 0.17	v : 0.17	y : 0.02	
u : 0.41	w : 0.20	v : 0.17	t : 0.11	e : 0.05	y : 0.02	
e : 0.19	w : 0.19	c : 0.17	f : 0.13	d : 0.10	v : 0.07	a : 0.04	g : 0.02	y : 0.02	b : 0.01	i : 0.01	
c : 0.25	e : 0.22	f : 0.17	d : 0.14	g : 0.04	h : 0.02	2 : 0.02	y : 0.02	b : 0.01	= : 0.01	i : 0.01	w : 0.01	] : 0.01	
c : 0.25	e : 0.22	f : 0.17	d : 0.17	g : 0.05	h : 0.02	2 : 0.02	] : 0.01	= : 0.01	i : 0.01	a : 0.01	
d : 0.22	e : 0.22	f : 0.17	] : 0.07	c : 0.07	g : 0.05	: : 0.04	2 : 0.04	h : 0.02	> : 0.01	= : 0.01	i : 0.01	G : 0.01	

#score	1500.0757836541454
#seq	68
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF842EFT_BCCIP_CDS_m1_run1.txt

#BEAR
fff[bb[dddd[ddddqqqqqqqqdddd]dddd]bb]ff	chr21:46281543-46281796(-)$1	253	179	218	19.7489
fff[bb[dddd[ddddqqqqqqqqdddd]dddd]bb]ff	chr21:46281484-46281743(-)$1	259	126	165	19.7489
[ccc####ccc[a[ddddllldddda]cccccc]bb]bb	chr7:104752939-104753209(-)$1	270	82	121	17.3991
dddd!!gggggggacccooooooccc]a]ggggggg]dd	chr7:6071044-6071332(-)$1	288	67	106	17.0295
cc[ccc[eeeee!!cccooooooccc22eeeee]ccc]c	chr17:29632109-29632459(+)$1	350	146	185	17.8301
=============!!cccnnnnnccc333==========	chr14:39736596-39736844(+)$1	248	203	242	17.0533

#otherMatches

#Seq PSSM
UGGUUGUGUCCAGUCUGUUGAUCGAGGCAGGGCCCAUCC	chr21:46281543-46281796(-)$1	253	179	218	19.7489
UGGUUGUGUCCAGUCUGUUGAUCGAGGCAGGGCCCAUCC	chr21:46281484-46281743(-)$1	259	126	165	19.7489
GUACAAGGUGCGGUCCUGGAGCAGGUGGUGGUGGAGGAG	chr7:104752939-104753209(-)$1	270	82	121	17.3991
GCCUGACUUUUUUCCAGAAGUGACUGAGCAGAAAAGAGG	chr7:6071044-6071332(-)$1	288	67	106	17.0295
AGAGGUGAACACGGCUUGCUGGGAGGAGGUGUUGGCUAU	chr17:29632109-29632459(+)$1	350	146	185	17.8301
GGCUUUGGGGUCUAAGCCGCCGUGGUCAGAGGUCCCGAA	chr14:39736596-39736844(+)$1	248	203	242	17.0533

#DB
(((.((.((((.((((........)))).)))).)).))	chr21:46281543-46281796(-)$1	1	179	218	19.7489
(((.((.((((.((((........)))).)))).)).))	chr21:46281484-46281743(-)$1	1	126	165	19.7489
.(((....(((.(.((((...))))).)))))).)).))	chr7:104752939-104753209(-)$1	1	82	121	17.3991
((((..(((((((((((......))).).))))))).))	chr7:6071044-6071332(-)$1	1	67	106	17.0295
((.(((.(((((..(((......)))..))))).))).)	chr17:29632109-29632459(+)$1	1	146	185	17.8301
(((((((((((((..(((.....)))...))))))))))	chr14:39736596-39736844(+)$1	1	203	242	17.0533

#PSSM
f : 0.33	[ : 0.16	d : 0.16	c : 0.16	= : 0.16	
f : 0.33	c : 0.33	d : 0.16	= : 0.16	
f : 0.33	c : 0.16	d : 0.16	[ : 0.16	= : 0.16	
[ : 0.33	c : 0.33	d : 0.16	= : 0.16	
b : 0.33	# : 0.16	! : 0.16	c : 0.16	= : 0.16	
b : 0.33	# : 0.16	! : 0.16	c : 0.16	= : 0.16	
[ : 0.50	# : 0.16	g : 0.16	= : 0.16	
d : 0.33	# : 0.16	g : 0.16	e : 0.16	= : 0.16	
d : 0.33	c : 0.16	g : 0.16	e : 0.16	= : 0.16	
d : 0.33	c : 0.16	g : 0.16	e : 0.16	= : 0.16	
d : 0.33	c : 0.16	g : 0.16	e : 0.16	= : 0.16	
[ : 0.50	g : 0.16	e : 0.16	= : 0.16	
d : 0.33	a : 0.16	g : 0.16	! : 0.16	= : 0.16	
d : 0.33	! : 0.33	[ : 0.16	a : 0.16	
d : 0.50	c : 0.33	! : 0.16	
d : 0.50	c : 0.50	
c : 0.50	q : 0.33	d : 0.16	
q : 0.33	o : 0.33	d : 0.16	c : 0.16	
q : 0.33	o : 0.33	l : 0.16	n : 0.16	
q : 0.33	o : 0.33	l : 0.16	n : 0.16	
q : 0.33	o : 0.33	l : 0.16	n : 0.16	
q : 0.33	o : 0.33	d : 0.16	n : 0.16	
q : 0.33	o : 0.33	d : 0.16	n : 0.16	
c : 0.50	q : 0.33	d : 0.16	
d : 0.50	c : 0.50	
c : 0.50	d : 0.33	a : 0.16	
d : 0.33	] : 0.33	2 : 0.16	3 : 0.16	
d : 0.33	c : 0.16	a : 0.16	2 : 0.16	3 : 0.16	
] : 0.50	c : 0.16	e : 0.16	3 : 0.16	
d : 0.33	c : 0.16	g : 0.16	e : 0.16	= : 0.16	
d : 0.33	c : 0.16	g : 0.16	e : 0.16	= : 0.16	
d : 0.33	c : 0.16	g : 0.16	e : 0.16	= : 0.16	
d : 0.33	c : 0.16	g : 0.16	e : 0.16	= : 0.16	
] : 0.66	g : 0.16	= : 0.16	
b : 0.50	g : 0.16	c : 0.16	= : 0.16	
b : 0.50	g : 0.16	c : 0.16	= : 0.16	
] : 0.66	c : 0.16	= : 0.16	
f : 0.33	b : 0.16	d : 0.16	] : 0.16	= : 0.16	
f : 0.33	b : 0.16	d : 0.16	c : 0.16	= : 0.16	

#score	108.81006867516668
#seq	6
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_UTR_m3_run1.txt

#BEAR
fffffqqqqqqqqfff	chr16:30389899-30390184(-)$1	285	88	104	12.6008
eee[aqqqqqqqqa22	chr19:11561213-11561516(+)$1	303	227	243	12.9007
eeeeeqqqqqqqqeee	chr22:22900040-22900318(-)$1	278	162	178	12.7099
fffffqqqqqqqqfff	chrX:48549549-48549856(+)$1	307	25	41	12.6008
c[cccqqqqqqqqccc	chr19:10579574-10579847(+)$1	273	158	174	13.8806
#ddddqqqqqqqqddd	chr16:29679926-29680177(+)$1	251	97	113	12.9436
fffbbqqqqqqqqbbC	chr10:121355842-121356127(-)$1	285	29	45	11.9604
dd[bbqqqqqqqqbb2	chrX:133930800-133931062(-)$1	262	43	59	12.9049
::cccqqqqqqqqccc	chr20:62153311-62153553(+)$1	242	178	194	11.8350
[ddddqqqqqqqqddd	chr1:10520269-10520539(-)$1	270	213	229	13.0578
ffcccqqqqqqqqccc	chr1:10516955-10517232(-)$1	277	80	96	13.5845
hhhhhqqqqqqqqhhh	chrX:133931049-133931276(-)$1	227	93	109	12.0488
=====qqqqqqqq===	chr16:29679191-29679477(+)$1	286	67	83	13.4053
eeeeeqqqqqqqqeee	chr19:18476987-18477227(+)$1	240	141	157	12.7099
fffffqqqqqqqqfff	chr1:145369551-145369829(+)$1	278	99	115	12.6008
cddddqqqqqqqqddd	chr11:73685640-73685881(-)$1	241	206	222	12.9620
[ddddqqqqqqqqddd	chr19:56671727-56672010(+)$1	283	188	204	13.0578
$$$bbqqqqqqqqbb4	chr1:227179721-227180014(-)$1	293	39	55	12.3318
:ddddqqqqqqqqddd	chr11:61664897-61665240(-)$1	343	326	342	12.0712
dd[bbqqqqqqqqbbd	chr1:26143440-26143713(+)$1	273	234	250	13.0278
:ddddqqqqqqqqddd	chr19:51323498-51323741(-)$1	243	86	102	12.0712
::cccqqqqqqqqccc	chr3:47454302-47454586(+)$1	284	179	195	11.8350
eee[aqqqqqqqqa]e	chr1:2240876-2241178(+)$1	302	198	214	13.1454
g[cccqqqqqqqqccc	chr22:35690691-35690988(+)$1	297	17	33	13.9133
c[cccqqqqqqqqccc	chr16:87733879-87734235(-)$1	356	252	268	13.8806
=====qqqqqqqq===	chr16:29679142-29679391(+)$1	249	116	132	13.4053
dd[bbqqqqqqqqbb2	chrX:133930862-133931144(-)$1	282	125	141	12.9049
e[cccqqqqqqqqccc	chr5:130537442-130537672(+)$1	230	152	168	13.8820
gggbbqqqqqqqqbb:	chr17:27037830-27038118(-)$1	288	253	269	12.2176
iiiiiqqqqqqqqiii	chr13:42894552-42894816(+)$1	264	25	41	13.2409
fffffqqqqqqqqfff	chr2:172016818-172017096(-)$1	278	76	92	12.6008
H:cccqqqqqqqqccc	chr1:27633631-27633878(+)$1	247	224	240	12.1207
eeeeeqqqqqqqqeee	chr16:29678719-29678941(+)$1	222	78	94	12.7099
eeeeeqqqqqqqqeee	chr19:51323541-51323850(-)$1	309	183	199	12.7099
::cccqqqqqqqqccc	chr1:1201481-1201776(-)$1	295	257	273	11.8350
c[cccqqqqqqqqccc	chr9:131088356-131088622(+)$1	266	174	190	13.8806
eeeeeqqqqqqqqeee	chr1:27634201-27634453(+)$1	252	60	76	12.7099
"""bbqqqqqqqqbb4	chr17:28256911-28257216(-)$1	305	283	299	12.9880
ee!!aqqqqqqqqa22	chr16:29679438-29679658(+)$1	220	147	163	12.9974
gggbbqqqqqqqqbb]	chr12:117288045-117288266(+)$1	221	132	148	13.1438
gggbbqqqqqqqqbb]	chr12:117288066-117288292(+)$1	226	111	127	13.1438
dd[bbqqqqqqqqbbd	chr1:28661801-28662085(+)$1	284	226	242	13.0278
!!cccqqqqqqqqccc	chr4:80147309-80147568(+)$1	259	112	128	13.9499
ee!!aqqqqqqqqa22	chr16:29679581-29679829(+)$1	248	4	20	12.9974
iiiiiqqqqqqqqiii	chr12:65089790-65090101(+)$1	311	160	176	13.2409
cddddqqqqqqqqddd	chr20:62153249-62153500(+)$1	251	205	221	12.9620
d[cccqqqqqqqqccc	chr11:61583477-61583748(-)$1	271	80	96	13.7973
dddbbqqqqqqqqbb:	chr1:205759028-205759303(-)$1	275	227	243	12.0330
ee!!aqqqqqqqqa22	chr16:29679412-29679638(+)$1	226	173	189	12.9974
e[cccqqqqqqqqccc	chr5:130537472-130537700(+)$1	228	122	138	13.8820
eeeeeqqqqqqqqeee	chr19:4047002-4047304(-)$1	302	173	189	12.7099
hhhhhqqqqqqqqhhh	chrX:133930944-133931249(-)$1	305	66	82	12.0488
c[cccqqqqqqqqccc	chrX:56592276-56592517(+)$1	241	18	34	13.8806
fffffqqqqqqqqfff	chr1:27633695-27633942(+)$1	247	20	36	12.6008
!!cccqqqqqqqqccc	chrX:53263350-53263626(-)$1	276	190	206	13.9499
!ddddqqqqqqqqddd	chr5:112929774-112930106(+)$1	332	68	84	13.0651
ddd[aqqqqqqqqa]d	chr16:29681200-29681445(+)$1	245	49	65	13.1337
gggggqqqqqqqqggg	chr1:179042746-179042988(+)$1	242	186	202	13.2068
d[cccqqqqqqqqccc	chr5:40831022-40831299(-)$1	277	155	171	13.7973
#ddddqqqqqqqqddd	chr16:29679901-29680119(+)$1	218	122	138	12.9436
gggggqqqqqqqqggg	chr6:31509081-31509331(-)$1	250	168	184	13.2068
ddd[aqqqqqqqqa]d	chr1:2241207-2241482(+)$1	275	62	78	13.1337
!!cccqqqqqqqqccc	chr16:81744548-81744802(+)$1	254	146	162	13.9499
[ddddqqqqqqqqddd	chr19:56671810-56672084(+)$1	274	105	121	13.0578
b[cccqqqqqqqqccc	chr1:204520755-204521031(+)$1	276	54	70	13.6536
fffffqqqqqqqqfff	chr2:172016736-172017018(-)$1	282	247	263	12.6008
fffbbqqqqqqqqbb]	chr12:32260082-32260393(+)$1	311	19	35	12.8690
b!!bbqqqqqqqqbb2	chr3:38455013-38455295(+)$1	282	228	244	12.8876
[ddddqqqqqqqqddd	chr3:185348981-185349287(+)$1	306	163	179	13.0578
fffffqqqqqqqqfff	chr11:10828773-10829023(-)$1	250	207	223	12.6008

#otherMatches

#Seq PSSM
GGCCCUGCCUCCUGGG	chr16:30389899-30390184(-)$1	285	88	104	12.6008
UGGUCUUUCUCUUGCC	chr19:11561213-11561516(+)$1	303	227	243	12.9007
CUCACUGGAUCUCGUG	chr22:22900040-22900318(-)$1	278	162	178	12.7099
CUGUGCUCCUCCCCGC	chrX:48549549-48549856(+)$1	307	25	41	12.6008
ACUCACACUCCCUUGA	chr19:10579574-10579847(+)$1	273	158	174	13.8806
uuccccaaauacuggg	chr16:29679926-29680177(+)$1	251	97	113	12.9436
UUCGGUGCCUUUUCCU	chr10:121355842-121356127(-)$1	285	29	45	11.9604
GAGGGGAGAAGCACCG	chrX:133930800-133931062(-)$1	262	43	59	12.9049
GCGGAAAAUAAACUCC	chr20:62153311-62153553(+)$1	242	178	194	11.8350
aaaaaaaGuuuuguuu	chr1:10520269-10520539(-)$1	270	213	229	13.0578
ACCUAACAUAUAGUAG	chr1:10516955-10517232(-)$1	277	80	96	13.5845
CUUCUGAAGCGUGGGA	chrX:133931049-133931276(-)$1	227	93	109	12.0488
gcaugugccugugugu	chr16:29679191-29679477(+)$1	286	67	83	13.4053
AGAUAUAACCUAUUGU	chr19:18476987-18477227(+)$1	240	141	157	12.7099
gucauggaugguggug	chr1:145369551-145369829(+)$1	278	99	115	12.6008
UCCAAUGGCCUUUUUG	chr11:73685640-73685881(-)$1	241	206	222	12.9620
ccuuuuccUGCCUGAA	chr19:56671727-56672010(+)$1	283	188	204	13.0578
UCCCAAAUCUUUCUGC	chr1:227179721-227180014(-)$1	293	39	55	12.3318
CUGGGCCCUCCCACCC	chr11:61664897-61665240(-)$1	343	326	342	12.0712
UGAGCCUUCCCCAGCC	chr1:26143440-26143713(+)$1	273	234	250	13.0278
AAAACACAGCCCAGUU	chr19:51323498-51323741(-)$1	243	86	102	12.0712
CCUCCUCCUCCCUGGA	chr3:47454302-47454586(+)$1	284	179	195	11.8350
CCCCCUCCUCCCUGUG	chr1:2240876-2241178(+)$1	302	198	214	13.1454
UAUAUAUAAUUUAAUA	chr22:35690691-35690988(+)$1	297	17	33	13.9133
CAUCAUGAUGUCCUGA	chr16:87733879-87734235(-)$1	356	252	268	13.8806
gcaugugccugugugu	chr16:29679142-29679391(+)$1	249	116	132	13.4053
GAGGGGAGAAGCACCG	chrX:133930862-133931144(-)$1	282	125	141	12.9049
augguccacuaaagcc	chr5:130537442-130537672(+)$1	230	152	168	13.8820
UGCGCCGAUUAACGCC	chr17:27037830-27038118(-)$1	288	253	269	12.2176
AAGGUUGUGUCUUGCU	chr13:42894552-42894816(+)$1	264	25	41	13.2409
CCGCCAUGACGGAGGC	chr2:172016818-172017096(-)$1	278	76	92	12.6008
AAGUCCCUUACUCGGC	chr1:27633631-27633878(+)$1	247	224	240	12.1207
GUGUUAAAAGAGAGGC	chr16:29678719-29678941(+)$1	222	78	94	12.7099
UGUUUGACGACGAAAA	chr19:51323541-51323850(-)$1	309	183	199	12.7099
CAGUGUUGAAAAUCAC	chr1:1201481-1201776(-)$1	295	257	273	11.8350
gagauaguaaucaauc	chr9:131088356-131088622(+)$1	266	174	190	13.8806
UUGCUUUAAUCCCAGC	chr1:27634201-27634453(+)$1	252	60	76	12.7099
UCCGCUUGCUUCUGUC	chr17:28256911-28257216(-)$1	305	283	299	12.9880
ggcuggucucaaacuc	chr16:29679438-29679658(+)$1	220	147	163	12.9974
aggguguucucaaacu	chr12:117288045-117288266(+)$1	221	132	148	13.1438
aggguguucucaaacu	chr12:117288066-117288292(+)$1	226	111	127	13.1438
CCACUGUAUUAAGAGG	chr1:28661801-28662085(+)$1	284	226	242	13.0278
caucuacagaagcaga	chr4:80147309-80147568(+)$1	259	112	128	13.9499
ggcuggucucaaacuc	chr16:29679581-29679829(+)$1	248	4	20	12.9974
UUCUUACAUAAUAGAG	chr12:65089790-65090101(+)$1	311	160	176	13.2409
UUUCCUGACACCUGGA	chr20:62153249-62153500(+)$1	251	205	221	12.9620
CGCCUGGGGAGGGAGG	chr11:61583477-61583748(-)$1	271	80	96	13.7973
GGAGCCUCCAUCCGCA	chr1:205759028-205759303(-)$1	275	227	243	12.0330
ggcuggucucaaacuc	chr16:29679412-29679638(+)$1	226	173	189	12.9974
augguccacuaaagcc	chr5:130537472-130537700(+)$1	228	122	138	13.8820
GCGGCCUCCCCCCGUC	chr19:4047002-4047304(-)$1	302	173	189	12.7099
CUUCUGAAGCGUGGGA	chrX:133930944-133931249(-)$1	305	66	82	12.0488
UCUAGUUGUAAGUCUA	chrX:56592276-56592517(+)$1	241	18	34	13.8806
AGGGCCCUUCUCUGCC	chr1:27633695-27633942(+)$1	247	20	36	12.6008
AAGGCCAAGCCAAGCC	chrX:53263350-53263626(-)$1	276	190	206	13.9499
UAGUUUUAUUCCUAAU	chr5:112929774-112930106(+)$1	332	68	84	13.0651
GUGGCUAUGCGGUGgc	chr16:29681200-29681445(+)$1	245	49	65	13.1337
CACAGUUUUUGUUUUG	chr1:179042746-179042988(+)$1	242	186	202	13.2068
cucgaacucgaccucg	chr5:40831022-40831299(-)$1	277	155	171	13.7973
uuccccaaauacuggg	chr16:29679901-29680119(+)$1	218	122	138	12.9436
CUGUUAAAGCCUGGGC	chr6:31509081-31509331(-)$1	250	168	184	13.2068
cccccuccucccUGUG	chr1:2241207-2241482(+)$1	275	62	78	13.1337
CAAACCAACCUCCGUU	chr16:81744548-81744802(+)$1	254	146	162	13.9499
ccuuuuccUGCCUGAA	chr19:56671810-56672084(+)$1	274	105	121	13.0578
gugucauuuugaagac	chr1:204520755-204521031(+)$1	276	54	70	13.6536
gcgggccuccucuccc	chr2:172016736-172017018(-)$1	282	247	263	12.6008
CCGCUGCCACCAGAGC	chr12:32260082-32260393(+)$1	311	19	35	12.8690
GCUAUGCCCACAGAUC	chr3:38455013-38455295(+)$1	282	228	244	12.8876
ACUGGAUGGUCAGCCA	chr3:185348981-185349287(+)$1	306	163	179	13.0578
UGCUUCUCGUUUCAGG	chr11:10828773-10829023(-)$1	250	207	223	12.6008

#DB
(((((........)))	chr16:30389899-30390184(-)$1	1	88	104	12.6008
(((.(........)..	chr19:11561213-11561516(+)$1	1	227	243	12.9007
(((((........)))	chr22:22900040-22900318(-)$1	1	162	178	12.7099
(((((........)))	chrX:48549549-48549856(+)$1	1	25	41	12.6008
(.(((........)))	chr19:10579574-10579847(+)$1	1	158	174	13.8806
.((((........)))	chr16:29679926-29680177(+)$1	1	97	113	12.9436
)))((........)))	chr10:121355842-121356127(-)$1	1	29	45	11.9604
((.((........)).	chrX:133930800-133931062(-)$1	1	43	59	12.9049
..(((........)))	chr20:62153311-62153553(+)$1	1	178	194	11.8350
.((((........)))	chr1:10520269-10520539(-)$1	1	213	229	13.0578
))(((........)))	chr1:10516955-10517232(-)$1	1	80	96	13.5845
(((((........)))	chrX:133931049-133931276(-)$1	1	93	109	12.0488
(((((........)))	chr16:29679191-29679477(+)$1	1	67	83	13.4053
(((((........)))	chr19:18476987-18477227(+)$1	1	141	157	12.7099
(((((........)))	chr1:145369551-145369829(+)$1	1	99	115	12.6008
(((((........)))	chr11:73685640-73685881(-)$1	1	206	222	12.9620
.((((........)))	chr19:56671727-56672010(+)$1	1	188	204	13.0578
...((........)).	chr1:227179721-227180014(-)$1	1	39	55	12.3318
.((((........)))	chr11:61664897-61665240(-)$1	1	326	342	12.0712
((.((........)))	chr1:26143440-26143713(+)$1	1	234	250	13.0278
.((((........)))	chr19:51323498-51323741(-)$1	1	86	102	12.0712
..(((........)))	chr3:47454302-47454586(+)$1	1	179	195	11.8350
(((.(........).)	chr1:2240876-2241178(+)$1	1	198	214	13.1454
(.(((........)))	chr22:35690691-35690988(+)$1	1	17	33	13.9133
(.(((........)))	chr16:87733879-87734235(-)$1	1	252	268	13.8806
(((((........)))	chr16:29679142-29679391(+)$1	1	116	132	13.4053
((.((........)).	chrX:133930862-133931144(-)$1	1	125	141	12.9049
(.(((........)))	chr5:130537442-130537672(+)$1	1	152	168	13.8820
)))((........)).	chr17:27037830-27038118(-)$1	1	253	269	12.2176
(((((........)))	chr13:42894552-42894816(+)$1	1	25	41	13.2409
(((((........)))	chr2:172016818-172017096(-)$1	1	76	92	12.6008
).(((........)))	chr1:27633631-27633878(+)$1	1	224	240	12.1207
(((((........)))	chr16:29678719-29678941(+)$1	1	78	94	12.7099
(((((........)))	chr19:51323541-51323850(-)$1	1	183	199	12.7099
..(((........)))	chr1:1201481-1201776(-)$1	1	257	273	11.8350
(.(((........)))	chr9:131088356-131088622(+)$1	1	174	190	13.8806
(((((........)))	chr1:27634201-27634453(+)$1	1	60	76	12.7099
...((........)).	chr17:28256911-28257216(-)$1	1	283	299	12.9880
((..(........)..	chr16:29679438-29679658(+)$1	1	147	163	12.9974
(((((........)).	chr12:117288045-117288266(+)$1	1	132	148	13.1438
(((((........)).	chr12:117288066-117288292(+)$1	1	111	127	13.1438
((.((........)))	chr1:28661801-28662085(+)$1	1	226	242	13.0278
..(((........)))	chr4:80147309-80147568(+)$1	1	112	128	13.9499
((..(........)..	chr16:29679581-29679829(+)$1	1	4	20	12.9974
(((((........)))	chr12:65089790-65090101(+)$1	1	160	176	13.2409
)((((........)))	chr20:62153249-62153500(+)$1	1	205	221	12.9620
(.(((........)))	chr11:61583477-61583748(-)$1	1	80	96	13.7973
)))((........)).	chr1:205759028-205759303(-)$1	1	227	243	12.0330
((..(........)..	chr16:29679412-29679638(+)$1	1	173	189	12.9974
(.(((........)))	chr5:130537472-130537700(+)$1	1	122	138	13.8820
(((((........)))	chr19:4047002-4047304(-)$1	1	173	189	12.7099
(((((........)))	chrX:133930944-133931249(-)$1	1	66	82	12.0488
(.(((........)))	chrX:56592276-56592517(+)$1	1	18	34	13.8806
(((((........)))	chr1:27633695-27633942(+)$1	1	20	36	12.6008
..(((........)))	chrX:53263350-53263626(-)$1	1	190	206	13.9499
.((((........)))	chr5:112929774-112930106(+)$1	1	68	84	13.0651
(((.(........).)	chr16:29681200-29681445(+)$1	1	49	65	13.1337
(((((........)))	chr1:179042746-179042988(+)$1	1	186	202	13.2068
(.(((........)))	chr5:40831022-40831299(-)$1	1	155	171	13.7973
.((((........)))	chr16:29679901-29680119(+)$1	1	122	138	12.9436
(((((........)))	chr6:31509081-31509331(-)$1	1	168	184	13.2068
(((.(........).)	chr1:2241207-2241482(+)$1	1	62	78	13.1337
..(((........)))	chr16:81744548-81744802(+)$1	1	146	162	13.9499
.((((........)))	chr19:56671810-56672084(+)$1	1	105	121	13.0578
(.(((........)))	chr1:204520755-204521031(+)$1	1	54	70	13.6536
(((((........)))	chr2:172016736-172017018(-)$1	1	247	263	12.6008
(((((........)).	chr12:32260082-32260393(+)$1	1	19	35	12.8690
(..((........)).	chr3:38455013-38455295(+)$1	1	228	244	12.8876
.((((........)))	chr3:185348981-185349287(+)$1	1	163	179	13.0578
(((((........)))	chr11:10828773-10829023(-)$1	1	207	223	12.6008

#PSSM
e : 0.18	f : 0.14	d : 0.12	c : 0.08	g : 0.08	: : 0.07	[ : 0.05	! : 0.05	# : 0.02	h : 0.02	= : 0.02	i : 0.02	b : 0.02	$ : 0.01	H : 0.01	" : 0.01	
d : 0.25	e : 0.15	f : 0.14	[ : 0.14	g : 0.07	: : 0.05	! : 0.05	h : 0.02	= : 0.02	i : 0.02	$ : 0.01	" : 0.01	
c : 0.25	d : 0.20	f : 0.12	e : 0.11	g : 0.07	[ : 0.05	! : 0.05	h : 0.02	= : 0.02	i : 0.02	$ : 0.01	" : 0.01	
c : 0.25	b : 0.18	d : 0.15	f : 0.10	e : 0.08	[ : 0.05	! : 0.04	h : 0.02	= : 0.02	i : 0.02	g : 0.02	
c : 0.25	b : 0.18	d : 0.15	f : 0.10	a : 0.10	e : 0.08	h : 0.02	= : 0.02	i : 0.02	g : 0.02	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.25	b : 0.18	d : 0.15	f : 0.10	a : 0.10	e : 0.08	h : 0.02	= : 0.02	i : 0.02	g : 0.02	
c : 0.25	b : 0.18	d : 0.15	f : 0.10	e : 0.08	2 : 0.05	] : 0.04	h : 0.02	= : 0.02	i : 0.02	g : 0.02	
c : 0.25	d : 0.21	f : 0.10	2 : 0.10	e : 0.10	] : 0.04	h : 0.02	= : 0.02	4 : 0.02	: : 0.02	i : 0.02	g : 0.02	C : 0.01	

#score	907.7760297893631
#seq	70
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF193UPY_SAFB2_UTR_m1_run2.txt

#BEAR
ggggggguuuuuuuuuuuugggg	chr16:447631-447851(+)$1	220	97	120	20.0177
FFF:ccctttttttttttccc::	chr13:108518857-108519174(-)$1	317	10	33	16.0090
e!!dddduuuuuuuuuuuudddd	chr6:56966800-56967093(+)$1	293	13	36	19.9754
bb!!cccvvvvvvvvvvvvvccc	chr14:58755415-58755750(-)$1	335	43	66	19.2287
dddxxxxxxxxxxxxxxxdddd:	chr18:9254776-9255038(+)$1	262	140	163	15.8112
ccc[bbwwwwwwwwwwwwwwbb3	chr17:41246004-41246276(-)$1	272	219	242	20.2524
"eeeeeuuuuuuuuuuuueeeee	chr1:46072982-46073241(+)$1	259	225	248	20.5903
dddxxxxxxxxxxxxxxxdddd>	chr4:2330477-2330763(-)$1	286	62	85	16.5097
dddd[auuuuuuuuuuuua]ddd	chr14:76672762-76673016(+)$1	254	183	206	20.4583
fffffvvvvvvvvvvvvvfffff	chr21:39469258-39469496(-)$1	238	129	152	18.3080
ddd:cccuuuuuuuuuuuuccc:	chr6:111694880-111695209(-)$1	329	261	284	19.2001
gggggguuuuuuuuuuuuggggg	chr2:109086566-109086892(+)$1	326	283	306	20.3425
eee[cccssssssssssccc]ee	chr16:24801068-24801351(+)$1	283	174	197	14.7725
eee[ccctttttttttttcccee	chr6:64422239-64422514(+)$1	275	97	120	19.9820
gggggggtttttttttttggggg	chr19:58772383-58772637(+)$1	254	6	29	18.6056
gggggggxxxxxxxxxxxxxxxg	chr7:23561699-23562028(-)$1	329	252	275	16.1685
g"""ccc^^^^^^^^^^^^^^^^	chr6:147613311-147613583(+)$1	272	19	42	14.1246
$fffffftttttttttttfffff	chr19:58774400-58774683(+)$1	283	122	145	17.7351
eeeecccssssssssssccc:ff	chr3:49057705-49058041(-)$1	336	25	48	13.6995
dddxxxxxxxxxxxxxxxdddd3	chr3:178976754-178977029(-)$1	275	145	168	16.7240
[gggggggssssssssssggggg	chr15:40913510-40913771(+)$1	261	43	66	13.1314
eeeeeevvvvvvvvvvvvveeee	chr1:203766418-203766703(+)$1	285	220	243	19.8137
c[eeeeettttttttttteeeee	chrX:106307587-106307921(-)$1	334	306	329	18.9059
####cccuuuuuuuuuuuuccc4	chr1:203768330-203768590(+)$1	260	207	230	20.8116
JJdddduuuuuuuuuuuudddd:	chr15:40914291-40914596(+)$1	305	99	122	16.9012
hhhhbbvvvvvvvvvvvvvbb]h	chr2:109088096-109088376(+)$1	280	189	212	17.9190
gg!!cccvvvvvvvvvvvvvccc	chr4:1229121-1229435(-)$1	314	162	185	19.8721
""dddduuuuuuuuuuuudddd6	chr10:38407909-38408195(+)$1	286	105	128	20.1780
ggggggwwwwwwwwwwwwwwggg	chr15:40913089-40913334(+)$1	245	15	38	20.4178
ddd^^^^^^^^^^^^^^^^^^^^	chr10:38411874-38412224(+)$1	350	179	202	14.1997
ddd[ccctttttttttttccc]d	chr4:2330640-2330998(-)$1	358	189	212	19.6464
dddxxxxxxxxxxxxxxxdddd3	chr18:9254687-9254947(+)$1	260	229	252	16.7240
ggg[cccrrrrrrrrrcccgggg	chrX:106309633-106309893(-)$1	260	99	122	11.6556
eeeewwwwwwwwwwwwwweeeee	chr8:59473933-59474219(+)$1	286	18	41	20.0867
ddd[bbwwwwwwwwwwwwwwbb2	chr17:41245220-41245495(-)$1	275	40	63	20.0467
ggdddduuuuuuuuuuuudddd]	chr1:46073068-46073296(+)$1	228	174	197	20.5858
E:dddduuuuuuuuuuuudddd:	chr2:109087823-109088099(+)$1	276	32	55	17.8672
ffffffuuuuuuuuuuuufffff	chr7:5107239-5107496(+)$1	257	178	201	19.5572
eee[bbyyyyyyyyyyyyyyyyb	chr17:41245419-41245721(-)$1	302	56	79	18.7438
%%cccwwwwwwwwwwwwwwccc5	chr18:9255527-9255771(+)$1	244	182	205	18.8701
eeeexxxxxxxxxxxxxxxeeee	chr7:158459772-158460130(-)$1	358	24	47	17.1741
"eeeeeuuuuuuuuuuuueeeee	chr1:46073041-46073268(+)$1	227	166	189	20.5903
eeeee^^^^^^^^^^^^^^^^^^	chr3:121415970-121416260(-)$1	290	0	23	14.4847
ccc[ccctttttttttttccc]c	chr19:11892263-11892581(+)$1	318	214	237	19.7478
eeeecccxxxxxxxxxxxxxxxc	chr6:111695121-111695407(-)$1	286	241	264	16.9257
ccc[bbwwwwwwwwwwwwwwbb3	chr17:41245941-41246199(-)$1	258	142	165	20.2524
cffffffssssssssssffffff	chr3:40577044-40577326(+)$1	282	26	49	12.7354
ee!!ddddssssssssssdddd3	chr1:155451089-155451325(-)$1	236	148	171	14.0266

#otherMatches

#Seq PSSM
gggguggggguggggggAGCCGC	chr16:447631-447851(+)$1	220	97	120	20.0177
UUUAUGUAGGCAAAagagacaga	chr13:108518857-108519174(-)$1	317	10	33	16.0090
GAUUGGUACAAACCUCGAAACCA	chr6:56966800-56967093(+)$1	293	13	36	19.9754
CCAUUGUAacugaagaaaugaca	chr14:58755415-58755750(-)$1	335	43	66	19.2287
GUGAAAAACAGUCAACACCACUA	chr18:9254776-9255038(+)$1	262	140	163	15.8112
CCUCACAAAUAAAUUAAAGCGUA	chr17:41246004-41246276(-)$1	272	219	242	20.2524
ACCUCUGAAGAGGCAAAAGGAGG	chr1:46072982-46073241(+)$1	259	225	248	20.5903
uggaauaaaauugagaagccaua	chr4:2330477-2330763(-)$1	286	62	85	16.5097
UGGGGAGAGAAAGGGAGAUGCCC	chr14:76672762-76673016(+)$1	254	183	206	20.4583
UUCCAAGGUAAAGGUUAAUGGAG	chr21:39469258-39469496(-)$1	238	129	152	18.3080
GACAGCAGAAAGCACAAAAUGCA	chr6:111694880-111695209(-)$1	329	261	284	19.2001
AACUUAUAUGAAUAAUCUUAAGU	chr2:109086566-109086892(+)$1	326	283	306	20.3425
GUGAAUCUGAAGUAAGUGGUACA	chr16:24801068-24801351(+)$1	283	174	197	14.7725
CUAAUGUAGGAAAAGGAAACAUA	chr6:64422239-64422514(+)$1	275	97	120	19.9820
UUGAGGUUCAUGGUACUCACCUC	chr19:58772383-58772637(+)$1	254	6	29	18.6056
AAUCUGGAAGAAUGAAUGGGUCC	chr7:23561699-23562028(-)$1	329	252	275	16.1685
ACCAGGCUAAAAUAUAUAUAUAA	chr6:147613311-147613583(+)$1	272	19	42	14.1246
ACUCUAUGAAUAACCAAGAUGGA	chr19:58774400-58774683(+)$1	283	122	145	17.7351
CCCCCAGACAUACUUUACUGAGC	chr3:49057705-49058041(-)$1	336	25	48	13.6995
UUCAAUCCAGAAAGCAGAGAAGA	chr3:178976754-178977029(-)$1	275	145	168	16.7240
UAAGAGUAAACAAAAUACUGCUU	chr15:40913510-40913771(+)$1	261	43	66	13.1314
GACAUAAAGAGAAUGAGUGUAUG	chr1:203766418-203766703(+)$1	285	220	243	19.8137
auaagggaaauuacaaaacccuu	chrX:106307587-106307921(-)$1	334	306	329	18.9059
CAAAAUGAUCACCAACUUCCAUG	chr1:203768330-203768590(+)$1	260	207	230	20.8116
UUGGGUUUUGAAGAUUUUGCCCU	chr15:40914291-40914596(+)$1	305	99	122	16.9012
GAGACUAUGAGCAAGAGAAAGUU	chr2:109088096-109088376(+)$1	280	189	212	17.9190
AGAGGGCGAGAUGAGGAAGGGUC	chr4:1229121-1229435(-)$1	314	162	185	19.8721
CACUCUUCAUUAAACAUCAGAGA	chr10:38407909-38408195(+)$1	286	105	128	20.1780
UUCAAUGACUUCAUAAAAAGAUU	chr15:40913089-40913334(+)$1	245	15	38	20.4178
gcaaagagaggggggaagggaag	chr10:38411874-38412224(+)$1	350	179	202	14.1997
aauauugaaaaacaaaaacaaaa	chr4:2330640-2330998(-)$1	358	189	212	19.6464
GUGAAAAACAGUCAACACCACUA	chr18:9254687-9254947(+)$1	260	229	252	16.7240
aggauaauaaugcuacuuaccuc	chrX:106309633-106309893(-)$1	260	99	122	11.6556
uagaacaauccgaagacaucuac	chr8:59473933-59474219(+)$1	286	18	41	20.0867
CAGAGCUGAAGUUAACAAAUGCA	chr17:41245220-41245495(-)$1	275	40	63	20.0467
AGGACCGAAUGAAGCUGAGGUCA	chr1:46073068-46073296(+)$1	228	174	197	20.5858
UAUGAGGAAAACAAUAAACUCAG	chr2:109087823-109088099(+)$1	276	32	55	17.8672
ucaccugaguuuugagaaaggug	chr7:5107239-5107496(+)$1	257	178	201	19.5572
GUAGAAAUCUAAGCCCACCUAAU	chr17:41245419-41245721(-)$1	302	56	79	18.7438
AAAGGAAAGUAAAGAAAAACCUG	chr18:9255527-9255771(+)$1	244	182	205	18.8701
GGGUAAGGAGGGCGGAGGGACCC	chr7:158459772-158460130(-)$1	358	24	47	17.1741
ACCUCUGAAGAGGCAAAAGGAGG	chr1:46073041-46073268(+)$1	227	166	189	20.5903
CUGAGAGGGGAGAAGUGGAAGAA	chr3:121415970-121416260(-)$1	290	0	23	14.4847
ACCCUAUGAAUGCAAGGAAUGUG	chr19:11892263-11892581(+)$1	318	214	237	19.7478
AAGUCCAAUCAAACAAAUAGCAU	chr6:111695121-111695407(-)$1	286	241	264	16.9257
CCUCACAAAUAAAUUAAAGCGUA	chr17:41245941-41246199(-)$1	258	142	165	20.2524
CCCCUACAAUCAUUUUGGUAGGG	chr3:40577044-40577326(+)$1	282	26	49	12.7354
UUAAUGAAGGAACAUGCAUUCAG	chr1:155451089-155451325(-)$1	236	148	171	14.0266

#DB
(((((((............))))	chr16:447631-447851(+)$1	1	97	120	20.0177
(((.(((...........)))..	chr13:108518857-108519174(-)$1	1	10	33	16.0090
(..((((............))))	chr6:56966800-56967093(+)$1	1	13	36	19.9754
((..(((.............)))	chr14:58755415-58755750(-)$1	1	43	66	19.2287
(((...............)))).	chr18:9254776-9255038(+)$1	1	140	163	15.8112
(((.((..............)).	chr17:41246004-41246276(-)$1	1	219	242	20.2524
.(((((............)))))	chr1:46072982-46073241(+)$1	1	225	248	20.5903
(((...............)))).	chr4:2330477-2330763(-)$1	1	62	85	16.5097
((((.(............).)))	chr14:76672762-76673016(+)$1	1	183	206	20.4583
(((((.............)))))	chr21:39469258-39469496(-)$1	1	129	152	18.3080
))).(((............))).	chr6:111694880-111695209(-)$1	1	261	284	19.2001
((((((............)))))	chr2:109086566-109086892(+)$1	1	283	306	20.3425
(((.(((..........))).))	chr16:24801068-24801351(+)$1	1	174	197	14.7725
(((.(((...........)))))	chr6:64422239-64422514(+)$1	1	97	120	19.9820
(((((((...........)))))	chr19:58772383-58772637(+)$1	1	6	29	18.6056
(((((((...............)	chr7:23561699-23562028(-)$1	1	252	275	16.1685
(...(((................	chr6:147613311-147613583(+)$1	1	19	42	14.1246
.((((((...........)))))	chr19:58774400-58774683(+)$1	1	122	145	17.7351
))))(((..........))).((	chr3:49057705-49058041(-)$1	1	25	48	13.6995
(((...............)))).	chr3:178976754-178977029(-)$1	1	145	168	16.7240
.(((((((..........)))))	chr15:40913510-40913771(+)$1	1	43	66	13.1314
((((((.............))))	chr1:203766418-203766703(+)$1	1	220	243	19.8137
(.(((((...........)))))	chrX:106307587-106307921(-)$1	1	306	329	18.9059
....(((............))).	chr1:203768330-203768590(+)$1	1	207	230	20.8116
((((((............)))).	chr15:40914291-40914596(+)$1	1	99	122	16.9012
((((((.............)).)	chr2:109088096-109088376(+)$1	1	189	212	17.9190
((..(((.............)))	chr4:1229121-1229435(-)$1	1	162	185	19.8721
..((((............)))).	chr10:38407909-38408195(+)$1	1	105	128	20.1780
((((((..............)))	chr15:40913089-40913334(+)$1	1	15	38	20.4178
(((....................	chr10:38411874-38412224(+)$1	1	179	202	14.1997
(((.(((...........))).)	chr4:2330640-2330998(-)$1	1	189	212	19.6464
(((...............)))).	chr18:9254687-9254947(+)$1	1	229	252	16.7240
(((.(((.........)))))))	chrX:106309633-106309893(-)$1	1	99	122	11.6556
((((..............)))))	chr8:59473933-59474219(+)$1	1	18	41	20.0867
(((.((..............)).	chr17:41245220-41245495(-)$1	1	40	63	20.0467
((((((............)))).	chr1:46073068-46073296(+)$1	1	174	197	20.5858
(.((((............)))).	chr2:109087823-109088099(+)$1	1	32	55	17.8672
((((((............)))))	chr7:5107239-5107496(+)$1	1	178	201	19.5572
(((.((................)	chr17:41245419-41245721(-)$1	1	56	79	18.7438
..(((..............))).	chr18:9255527-9255771(+)$1	1	182	205	18.8701
((((...............))))	chr7:158459772-158460130(-)$1	1	24	47	17.1741
.(((((............)))))	chr1:46073041-46073268(+)$1	1	166	189	20.5903
(((((..................	chr3:121415970-121416260(-)$1	1	0	23	14.4847
(((.(((...........))).)	chr19:11892263-11892581(+)$1	1	214	237	19.7478
))))(((...............)	chr6:111695121-111695407(-)$1	1	241	264	16.9257
(((.((..............)).	chr17:41245941-41246199(-)$1	1	142	165	20.2524
)((((((..........))))))	chr3:40577044-40577326(+)$1	1	26	49	12.7354
((..((((..........)))).	chr1:155451089-155451325(-)$1	1	148	171	14.0266

#PSSM
e : 0.22	g : 0.18	d : 0.18	c : 0.10	" : 0.06	f : 0.04	F : 0.02	b : 0.02	$ : 0.02	[ : 0.02	# : 0.02	J : 0.02	h : 0.02	E : 0.02	% : 0.02	
e : 0.25	g : 0.18	d : 0.18	f : 0.08	c : 0.06	" : 0.04	F : 0.02	! : 0.02	b : 0.02	[ : 0.02	# : 0.02	J : 0.02	h : 0.02	: : 0.02	% : 0.02	
d : 0.27	e : 0.25	g : 0.14	! : 0.08	c : 0.08	f : 0.08	F : 0.02	" : 0.02	# : 0.02	h : 0.02	
[ : 0.18	e : 0.18	g : 0.12	d : 0.12	x : 0.08	f : 0.08	! : 0.06	: : 0.04	" : 0.02	# : 0.02	h : 0.02	^ : 0.02	c : 0.02	
c : 0.29	g : 0.12	d : 0.12	x : 0.10	b : 0.10	e : 0.10	f : 0.08	[ : 0.02	^ : 0.02	w : 0.02	
c : 0.27	g : 0.12	d : 0.12	x : 0.10	b : 0.10	e : 0.08	f : 0.06	^ : 0.04	w : 0.04	a : 0.02	v : 0.02	
c : 0.27	u : 0.18	w : 0.12	x : 0.10	g : 0.08	v : 0.06	d : 0.04	f : 0.04	^ : 0.04	e : 0.02	y : 0.02	
u : 0.27	t : 0.14	x : 0.14	w : 0.12	v : 0.10	s : 0.06	^ : 0.06	g : 0.02	r : 0.02	y : 0.02	d : 0.02	
u : 0.27	t : 0.14	x : 0.14	w : 0.12	v : 0.10	s : 0.10	^ : 0.06	r : 0.02	y : 0.02	
u : 0.27	t : 0.14	x : 0.14	w : 0.12	v : 0.10	s : 0.10	^ : 0.06	r : 0.02	y : 0.02	
u : 0.27	t : 0.14	x : 0.14	w : 0.12	v : 0.10	s : 0.10	^ : 0.06	r : 0.02	y : 0.02	
u : 0.27	t : 0.14	x : 0.14	w : 0.12	v : 0.10	s : 0.10	^ : 0.06	r : 0.02	y : 0.02	
u : 0.27	t : 0.14	x : 0.14	w : 0.12	v : 0.10	s : 0.10	^ : 0.06	r : 0.02	y : 0.02	
u : 0.27	t : 0.14	x : 0.14	w : 0.12	v : 0.10	s : 0.10	^ : 0.06	r : 0.02	y : 0.02	
u : 0.27	t : 0.14	x : 0.14	w : 0.12	v : 0.10	s : 0.10	^ : 0.06	r : 0.02	y : 0.02	
u : 0.27	t : 0.14	x : 0.14	w : 0.12	v : 0.10	s : 0.10	^ : 0.06	r : 0.02	y : 0.02	
u : 0.27	t : 0.14	x : 0.14	w : 0.12	v : 0.10	s : 0.10	^ : 0.06	c : 0.02	y : 0.02	
u : 0.27	t : 0.14	x : 0.14	w : 0.12	v : 0.10	c : 0.06	^ : 0.06	s : 0.04	y : 0.02	f : 0.02	
d : 0.18	c : 0.14	w : 0.10	u : 0.08	v : 0.08	e : 0.08	f : 0.08	g : 0.06	x : 0.06	^ : 0.06	a : 0.02	y : 0.02	
d : 0.20	c : 0.18	e : 0.12	g : 0.10	w : 0.08	f : 0.08	^ : 0.06	v : 0.04	x : 0.04	] : 0.02	b : 0.02	y : 0.02	
d : 0.22	c : 0.18	g : 0.12	e : 0.12	b : 0.08	f : 0.08	^ : 0.06	x : 0.04	] : 0.02	: : 0.02	y : 0.02	
d : 0.22	e : 0.16	g : 0.12	c : 0.10	f : 0.10	b : 0.06	^ : 0.06	] : 0.06	x : 0.04	: : 0.02	y : 0.02	
e : 0.16	g : 0.14	: : 0.10	3 : 0.10	f : 0.10	c : 0.08	d : 0.06	^ : 0.06	> : 0.02	4 : 0.02	h : 0.02	6 : 0.02	2 : 0.02	] : 0.02	b : 0.02	5 : 0.02	

#score	860.3882029963141
#seq	48
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF727XDH_DDX55_UTR_m2_run1.txt

#BEAR
$eeeee[bb[ccc!!cccoooooocccccc]bb]eeeee2	chr19:17342822-17343124(-)$1	302	228	268	16.0136
gggggg[a[a!!a!!cccooooooccc22a22a]a]gggg	chr12:56632204-56632449(-)$1	245	85	125	19.1258
ff[ccc[a[ccc"""cccmmmmccc333ccc]acccffff	chr22:21982563-21982838(-)$1	275	73	113	13.7607
ddd[ccc!!ccc"""ccclllccccccccc]dddd]dddd	chrX:152961525-152961736(+)$1	211	14	54	13.9327
dd[bbggggggg"""ddddnnnnndddd]ggggggg]bb]	chr8:145699227-145699473(+)$1	246	42	82	13.7621
============"""cccnnnnnccc4444==========	chr7:98993976-98994225(-)$1	249	54	94	18.8399
e####ccc[a!!ddddcccnnnnnccc4444dddd]accc	chr1:249144393-249144697(-)$1	304	70	110	14.4228
==========="""bb[aooooooa]bb333=========	chr7:100277174-100277472(-)$1	298	201	241	19.5250
eeeee!!bb[dddd[cccoooooocccdddd]bb22eeee	chr9:131770613-131770927(-)$1	314	16	56	13.9526
cceeeeedddd"""ddddoooooodddd4444dddd]eee	chr4:667899-668120(-)$1	221	95	135	16.2629
ggggggg"""ccc!!cccrrrrrrrrrccccccggggggg	chr12:6979443-6979707(+)$1	264	154	194	14.7005
c[iiiiiiiii####cccooooooccc333iiiiiiiii]	chr14:70238323-70238570(+)$1	247	23	63	21.6402
cc[ccc!!ggggggg!!cccmmmmccc333ggggggg]cc	chr11:71949882-71950125(+)$1	243	194	234	14.8587
[bb[dddd"""bb[ddddoooooodddd333bb333dddd	chr11:62482314-62482638(-)$1	324	227	267	15.8684
e$$$$$===========[ccclllccc]===========e	chr17:79668584-79668889(+)$1	305	251	291	14.7883
cc####dddd!!bb[cccooooooccc]bb22dddd333c	chr19:50183296-50183573(+)$1	277	143	183	15.4874
cc[a!!============qqqqqqqq============22	chr16:28848187-28848443(+)$1	256	85	125	14.1120
cc"""=============qqqqqqqq=============6	chr17:56168128-56168372(+)$1	244	61	101	13.9172
:::eeeee[ccc"""cccooooooccc4444ccc]eeeee	chr17:7757297-7757607(+)$1	310	27	67	16.0309
!cccdddd[ccc!!ddddoooooodddd666666ccc]dd	chr20:36146132-36146380(-)$1	248	70	110	14.2482
ddd[ccc!!ccc"""ccclllccccccccc]dddd]dddd	chrX:152961435-152961689(+)$1	254	104	144	13.9327
==========$$$$$cccooooooccc55555========	chr6:134308389-134308645(+)$1	256	197	237	17.4414
[ffffff[bb$$$$$cccooooooccc333bb]ffffff]	chr8:67969514-67969762(-)$1	248	199	239	16.4583
##iiiiiiiii!!cccqqqqqqqqccc333iiiiiiiii]	chr1:33476138-33476449(-)$1	311	212	252	15.2866
d[a[ggggggg[a####cccmmmmccc333a]ggggggg]	chr11:65421934-65422253(-)$1	319	270	310	15.9106
#dddd!!ggggggg[cccooooooccc]ggggggg22ddd	chr7:73536549-73536821(+)$1	272	118	158	16.3324
###dddd!!dddd[ddddoooooodddd]dddd4444ddd	chr11:71949489-71949752(+)$1	263	125	165	14.4435
a[ccc"""bb!!dddd[aooooooadddd]bb333ccc]a	chr19:2755618-2755842(-)$1	224	116	156	15.2482
[a!!ccc"""ccc!!ccclllccc]ccc4444ccca]eee	chrX:47518175-47518436(-)$1	261	40	80	15.5712
ggggggggggggg!!cccooooooccc333ggggggg:::	chr19:2037487-2037728(-)$1	241	107	147	16.4249
"cccffffff!!a[a[bboooooobb]a]a22ffffff]c	chr11:1774110-1774358(-)$1	248	109	149	13.9140
dd!!hhhhhhhh!!ddddoooooodddd333hhhhhhhhd	chr11:67379594-67379836(+)$1	242	197	237	15.0976
ee[ccc####ddddddddoooooodddd]dddd4444ccc	chrX:152961323-152961547(+)$1	224	63	103	14.6474
c[eeeee"""cccccc[aooooooa]ccc]ccceeeeecc	chr1:154929836-154930109(-)$1	273	146	186	15.2093
[ccc"""ggggggg[cccrrrrrrrrrcccggggggg22c	chrX:48682928-48683218(+)$1	290	217	257	13.6916
hhhhhhh!!ccc!!ddddoooooodddd22ccc]hhhhhh	chr22:20114616-20114829(+)$1	213	73	113	15.0688
DDDeeeeebbccc!!cccooooooccc333ccc]bb]eee	chr1:1477197-1477503(-)$1	306	11	51	14.2738
cc::==========!!accclllccc]a22==========	chr11:64014154-64014441(-)$1	287	123	163	14.7247
fff####dddda!!a[ccclllccc]a4444a]dddd333	chr1:156109482-156109768(+)$1	286	157	197	13.9939
cc[a!!============qqqqqqqq============22	chr16:28848101-28848330(+)$1	229	171	211	14.1120
!iiiiiiiii"""a[cccooooooccc]a666666iiiii	chr19:3052973-3053218(-)$1	245	89	129	17.4181
fccciiiiiiiii!!ddddmmmmdddd333iiiiiiiii]	chr19:17387524-17387801(+)$1	277	220	260	16.3091
ff[ccc[dddd!!ccccccnnnnnccc22ccc]dddd]cc	chr20:62522329-62522604(+)$1	275	157	197	13.2102
b!!ggggggg[a"""ddddmmmmdddd333aggggggg22	chrX:152961798-152962014(+)$1	216	126	166	15.7892
========="""a[ddddpppppppdddd]a=========	chr7:100804169-100804418(+)$1	249	140	180	13.4670
ggggg####bb[dddd[aooooooa]dddd]bb333gggg	chr12:49490970-49491214(-)$1	244	187	227	15.0080
eeee!!eeeee####ddddmmmmdddd4444eeeee]eee	chr7:100804071-100804325(+)$1	254	84	124	13.3318
========ccc####ddddbblllbb]ddddccc]=====	chr9:139557337-139557558(+)$1	221	33	73	13.6785
%%%===========[cccooooooccc]===========]	chr11:61641159-61641418(-)$1	259	15	55	18.7158
b[dddd[ccc[bb!!cccooooooccc]bb]ccc]dddd]	chr12:56552042-56552278(+)$1	236	123	163	16.0531
fff=========="""cccooooooccc333=========	chr19:50372358-50372622(-)$1	264	223	263	19.9646
eeee####ffffff[cccooooooccc]ffffff22eeee	chr19:19388435-19388723(-)$1	288	179	219	14.4104
b"""ffffff[bb[ddddooooooddddbb]ffffff333	chr16:30134299-30134609(-)$1	310	246	286	14.0793
===========####ddddmmmmdddd22===========	chr7:100804267-100804512(+)$1	245	101	141	16.8999

#otherMatches

#Seq PSSM
UCCUCAGCACCCCUAGCAUGAACUUGUGGGAUGGUGGGGU	chr19:17342822-17343124(-)$1	302	228	268	16.0136
GGGGGUGGGUGGGAGGGGAGGGUGCCUGGCAGAGCAGCCC	chr12:56632204-56632449(-)$1	245	85	125	19.1258
GGGAGGAGGUCCCCUGUGAGCCCACUCUGGAACCCUUCCU	chr22:21982563-21982838(-)$1	275	73	113	13.7607
AUAGGCAAAACAAAAGCUUCGAGCUGUUGCGUGUGUGAGU	chrX:152961525-152961736(+)$1	211	14	54	13.9327
CUCUCCCUCCCCCAGCCUGGAGCACGGGAGGGGAGGUGAC	chr8:145699227-145699473(+)$1	246	42	82	13.7621
CCUCUUCAUCUUGGCACAGAAAUUGUUUGGGGGAUGGGGG	chr7:98993976-98994225(-)$1	249	54	94	18.8399
UUCCCCUGUGAAUUCUGCGGCAAGCGCUUUGAGAAGCCAG	chr1:249144393-249144697(-)$1	304	70	110	14.4228
UGGGUGCAGGGGUCACCGUGUUCCCUGUCUGCCUUGUACC	chr7:100277174-100277472(-)$1	298	201	241	19.5250
GCAGCCCUGCCACUUAACUUGUUUGUUGGUGACACAGUUG	chr9:131770613-131770927(-)$1	314	16	56	13.9526
GGUGCAGGUCUCUCCGCUCAUCAAGGUGAUCCAGGCUUUG	chr4:667899-668120(-)$1	221	95	135	16.2629
CAGAAGCCCAGUAACUGCCCUUUCCCUGCAUAUGCUUCUG	chr12:6979443-6979707(+)$1	264	154	194	14.7005
GGUUGUUGAAAACUAAUUGUAUUAAAUGUCUUUUGAUAAG	chr14:70238323-70238570(+)$1	247	23	63	21.6402
UCUUGCAAGCAGCCUCCUGGGCAGUCGUAAGGGUUGCGGC	chr11:71949882-71950125(+)$1	243	194	234	14.8587
GACAUUCUGAGGCAGCUGGACUGGCAGCCAAGUAAAGGAG	chr11:62482314-62482638(-)$1	324	227	267	15.8684
UCUGCUUUCUUUCCCCAGGGCUGGGCCAUGGGGAGGGAAG	chr17:79668584-79668889(+)$1	305	251	291	14.7883
UCCCCUCCCCAGCUGUGGGCUGAGCUAGAGACGGGGUCAG	chr19:50183296-50183573(+)$1	277	143	183	15.4874
GGUCCAGCAGGGGUGGGGGGUUCCUGCUCUGCCCCUGCCC	chr16:28848187-28848443(+)$1	256	85	125	14.1120
ACAAUGUGGGGGGGUGGGGGAUCCAGCUUAUUCUUUUAUU	chr17:56168128-56168372(+)$1	244	61	101	13.9172
CCUGUACAUGUCUCUUUAUUCACUUGGUUAUGAUUUGUAU	chr17:7757297-7757607(+)$1	310	27	67	16.0309
GCUAGCUAUAUAUGGUAGGUGCCGCUACAGUUUUUAUUUA	chr20:36146132-36146380(-)$1	248	70	110	14.2482
AUAGGCAAAACAAAAGCUUCGAGCUGUUGCGUGUGUGAGU	chrX:152961435-152961689(+)$1	254	104	144	13.9327
UCUUUUUCAAUUGAAUGUGCACAAAUAAAAGUUUGGAAAA	chr6:134308389-134308645(+)$1	256	197	237	17.4414
gaguacaguggcuauucacaggcaugaucauaguguacua	chr8:67969514-67969762(-)$1	248	199	239	16.4583
AGUUUUUAAAGUGUAAGGGaaaaauuaauuuuuuaaaaaa	chr1:33476138-33476449(-)$1	311	212	252	15.2866
CAGAGGCCCCCCGACCCAGCUCCUGCUCCACUGGGGGCCC	chr11:65421934-65422253(-)$1	319	270	310	15.9106
AGCAUCUAGGAAGUAUUAAAACUGUGAAGCUUUCUCAGUG	chr7:73536549-73536821(+)$1	272	118	158	16.3324
AGGUCAGUUGCCAUGGUUACCGAGGACCCUGGUUACUCUG	chr11:71949489-71949752(+)$1	263	125	165	14.4435
GAGAGCCAGCAAGCUGAGCACAGACCAGCAGCGACCUCCC	chr19:2755618-2755842(-)$1	224	116	156	15.2482
GAACUGUGUGUGAGGCCAAACUGGAUCGGUCAACAUGGUC	chrX:47518175-47518436(-)$1	261	40	80	15.5712
UUUUUUUAAAGUGGGGGAAAAACAUCCAAGCACUUUAAUU	chr19:2037487-2037728(-)$1	241	107	147	16.4249
GUCCCGGGCCCGUUGAGGAUGAGGCCGCUAGAGGCCUGAG	chr11:1774110-1774358(-)$1	248	109	149	13.9140
UGUUGGGGGAUUUUUGGACUCUGUUUCACAUGGUCCCCCC	chr11:67379594-67379836(+)$1	242	197	237	15.0976
UAUAAAAACUUGAGAGAAUGAGAUUUCUGCUUGUAUAUUU	chrX:152961323-152961547(+)$1	224	63	103	14.6474
CAUGGGGUGUGGCCCUCGGAGAAGUUAGGAGUCCCCCAGC	chr1:154929836-154930109(-)$1	273	146	186	15.2093
ACUCCCCAAGAGUGCUUAUUUAAGUGUUAAUACUUUUAAG	chrX:48682928-48683218(+)$1	290	217	257	13.6916
UAAAGAACUGAACUCAACAUUCAGGUUGUUUUUUUUUUUU	chr22:20114616-20114829(+)$1	213	73	113	15.0688
AGGAGAAGAGUGGCCGCACCUUUCUGCACACCGUCUGCUU	chr1:1477197-1477503(-)$1	306	11	51	14.2738
CCAAGCCCGGGGGCUCCGCAUGCUGCAGCUgcccccgggc	chr11:64014154-64014441(-)$1	287	123	163	14.7247
CUGGGUGGGCUCUGUGCAGUCACUGGAGGUUGAAGCCAAG	chr1:156109482-156109768(+)$1	286	157	197	13.9939
GGUCCAGCAGGGGUGGGGGGUUCCUGCUCUGCCCCUGCCC	chr16:28848101-28848330(+)$1	229	171	211	14.1120
uuuuuuuCUUUUUCCAGUAUACUAGCUUGUCUUUUAAGAA	chr19:3052973-3053218(-)$1	245	89	129	17.4181
GCAGGCGGGUGUGGACAGGAUGUCUUGGAACACACCUGCA	chr19:17387524-17387801(+)$1	277	220	260	16.3091
CUCGCACACCGGGGCCCUGCAUGUCAGAUGGCGUGGUCUG	chr20:62522329-62522604(+)$1	275	157	197	13.2102
CGACACCCAGACAGAGGCUGCAGGGCUGGGGCUGGGUGAG	chrX:152961798-152962014(+)$1	216	126	166	15.7892
CUCCUUGGCUGCAGUGGGGCCUUUAUCCAGUGCCAGGGAG	chr7:100804169-100804418(+)$1	249	140	180	13.4670
AUCCUGGAGGGGCUUUGGACCACCUGAAAGACCAAGGGGA	chr12:49490970-49491214(-)$1	244	187	227	15.0080
CCCUAAUAACUGUAAAUAUAUAAAUAUGUCAGGUUAAAGG	chr7:100804071-100804325(+)$1	254	84	124	13.3318
GCCUCCCUGCACCAAGCUGGCCCUGCACGGCUGCAAGGGA	chr9:139557337-139557558(+)$1	221	33	73	13.6785
CAGGGGUGUUAGGAUCUUGCAACUGAGCUCCUAACACCCA	chr11:61641159-61641418(-)$1	259	15	55	18.7158
CGGAGAGCUGAGCAGUCAAGAUGGUGGGGCCCAGGUCUUG	chr12:56552042-56552278(+)$1	236	123	163	16.0531
GGCCCUCACUCUCCGGCCCUGGUGUGGGGGAGAGAGUGAG	chr19:50372358-50372622(-)$1	264	223	263	19.9646
AAGUGAGUGUGGCCUUGUGGGAGGGCAUGGCCAUGAACUU	chr19:19388435-19388723(-)$1	288	179	219	14.4104
CAGGUGAGGGGGCGUUCCGGGGGAGGGGGUGCCCUCAGGG	chr16:30134299-30134609(-)$1	310	246	286	14.0793
UUUCUAACCUUGCCACUUUGAGGGAAGGAAGGGUUGGGGG	chr7:100804267-100804512(+)$1	245	101	141	16.8999

#DB
.(((((.((.(((..(((......)))))).)).))))).	chr19:17342822-17343124(-)$1	1	228	268	16.0136
((((((.(.(..(..(((......)))..)..).).))))	chr12:56632204-56632449(-)$1	1	85	125	19.1258
((.(((.(.(((...(((....)))...))).))))))))	chr22:21982563-21982838(-)$1	1	73	113	13.7607
(((.(((..(((...(((...))))))))).)))).))))	chrX:152961525-152961736(+)$1	1	14	54	13.9327
((.(((((((((...((((.....)))).))))))).)).	chr8:145699227-145699473(+)$1	1	42	82	13.7621
((((((((((((...(((.....)))....))))))))))	chr7:98993976-98994225(-)$1	1	54	94	18.8399
(....(((.(..(((((((.....)))....)))).))))	chr1:249144393-249144697(-)$1	1	70	110	14.4228
(((((((((((...((.(......).))...)))))))))	chr7:100277174-100277472(-)$1	1	201	241	19.5250
(((((..((.((((.(((......))))))).))..))))	chr9:131770613-131770927(-)$1	1	16	56	13.9526
(((((((((((...((((......))))....)))).)))	chr4:667899-668120(-)$1	1	95	135	16.2629
(((((((...(((..(((.........)))))))))))))	chr12:6979443-6979707(+)$1	1	154	194	14.7005
(.(((((((((....(((......)))...))))))))).	chr14:70238323-70238570(+)$1	1	23	63	21.6402
((.(((..(((((((..(((....)))...))))))).))	chr11:71949882-71950125(+)$1	1	194	234	14.8587
.((.((((...((.((((......))))...))...))))	chr11:62482314-62482638(-)$1	1	227	267	15.8684
(.....(((((((((((.(((...))).))))))))))))	chr17:79668584-79668889(+)$1	1	251	291	14.7883
((....((((..((.(((......))).))..))))...)	chr19:50183296-50183573(+)$1	1	143	183	15.4874
((.(..((((((((((((........))))))))))))..	chr16:28848187-28848443(+)$1	1	85	125	14.1120
((...(((((((((((((........))))))))))))).	chr17:56168128-56168372(+)$1	1	61	101	13.9172
...(((((.(((...(((......)))....))).)))))	chr17:7757297-7757607(+)$1	1	27	67	16.0309
.(((((((.(((..((((......))))......))).))	chr20:36146132-36146380(-)$1	1	70	110	14.2482
(((.(((..(((...(((...))))))))).)))).))))	chrX:152961435-152961689(+)$1	1	104	144	13.9327
((((((((((.....(((......))).....))))))))	chr6:134308389-134308645(+)$1	1	197	237	17.4414
.((((((.((.....(((......)))...)).)))))).	chr8:67969514-67969762(-)$1	1	199	239	16.4583
..(((((((((..(((........)))...))))))))).	chr1:33476138-33476449(-)$1	1	212	252	15.2866
(.(.(((((((.(....(((....)))...).))))))).	chr11:65421934-65422253(-)$1	1	270	310	15.9106
.((((..(((((((.(((......))).)))))))..)))	chr7:73536549-73536821(+)$1	1	118	158	16.3324
...((((..((((.((((......)))).))))....)))	chr11:71949489-71949752(+)$1	1	125	165	14.4435
(.(((...((..((((.(......))))).))...))).)	chr19:2755618-2755842(-)$1	1	116	156	15.2482
.(..(((...(((..(((...))).)))....)))).)))	chrX:47518175-47518436(-)$1	1	40	80	15.5712
))))))(((((((..(((......)))...)))))))...	chr19:2037487-2037728(-)$1	1	107	147	16.4249
.(((((((((..(.(.((......)).).)..)))))).)	chr11:1774110-1774358(-)$1	1	109	149	13.9140
((..((((((((..((((......))))...)))))))))	chr11:67379594-67379836(+)$1	1	197	237	15.0976
((.(((....((((((((......)))).))))....)))	chrX:152961323-152961547(+)$1	1	63	103	14.6474
(.(((((...((((((.(......).))).))))))))))	chr1:154929836-154930109(-)$1	1	146	186	15.2093
.(((...(((((((.(((.........))))))))))..)	chrX:48682928-48683218(+)$1	1	217	257	13.6916
(((((((..(((..((((......))))..))).))))))	chr22:20114616-20114829(+)$1	1	73	113	15.0688
(((((((((((((..(((......)))...))).)).)))	chr1:1477197-1477503(-)$1	1	11	51	14.2738
))..((((((((((..((((...))).)..))))))))))	chr11:64014154-64014441(-)$1	1	123	163	14.7247
(((....(((((..(.(((...))).)....).))))...	chr1:156109482-156109768(+)$1	1	157	197	13.9939
((.(..((((((((((((........))))))))))))..	chr16:28848101-28848330(+)$1	1	171	211	14.1120
.(((((((((...(.(((......))).)......)))))	chr19:3052973-3053218(-)$1	1	89	129	17.4181
)((((((((((((..((((....))))...))))))))).	chr19:17387524-17387801(+)$1	1	220	260	16.3091
((.(((.((((..((((((.....)))..))).)))).))	chr20:62522329-62522604(+)$1	1	157	197	13.2102
(..(((((((.(...((((....))))...))))))))..	chrX:152961798-152962014(+)$1	1	126	166	15.7892
(((((((((...(.((((.......)))).))))))))))	chr7:100804169-100804418(+)$1	1	140	180	13.4670
(((((....((.((((.(......).)))).))...))))	chr12:49490970-49491214(-)$1	1	187	227	15.0080
((((..(((((....((((....))))....))))).)))	chr7:100804071-100804325(+)$1	1	84	124	13.3318
(((((((((((....((((((...)).))))))).)))))	chr9:139557337-139557558(+)$1	1	33	73	13.6785
...(((((((((((.(((......))).))))))))))).	chr11:61641159-61641418(-)$1	1	15	55	18.7158
(.((((.(((.((..(((......))).)).))).)))).	chr12:56552042-56552278(+)$1	1	123	163	16.0531
)))((((((((((...(((......)))...)))))))))	chr19:50372358-50372622(-)$1	1	223	263	19.9646
((((....((((((.(((......))).))))))..))))	chr19:19388435-19388723(-)$1	1	179	219	14.4104
(...((((((.((.((((......)))))).))))))...	chr16:30134299-30134609(-)$1	1	246	286	14.0793
(((((((((((....((((....))))..)))))))))))	chr7:100804267-100804512(+)$1	1	101	141	16.8999

#PSSM
c : 0.16	= : 0.11	e : 0.11	f : 0.09	d : 0.09	g : 0.07	[ : 0.07	# : 0.05	b : 0.05	! : 0.03	$ : 0.01	: : 0.01	a : 0.01	" : 0.01	h : 0.01	D : 0.01	% : 0.01	
c : 0.20	= : 0.11	e : 0.09	f : 0.09	d : 0.09	[ : 0.09	g : 0.07	# : 0.05	b : 0.01	$ : 0.01	: : 0.01	a : 0.01	h : 0.01	D : 0.01	i : 0.01	! : 0.01	% : 0.01	" : 0.01	
[ : 0.12	e : 0.11	= : 0.11	c : 0.09	g : 0.07	d : 0.07	# : 0.05	i : 0.05	f : 0.05	! : 0.05	" : 0.03	: : 0.03	b : 0.01	$ : 0.01	a : 0.01	h : 0.01	D : 0.01	% : 0.01	
c : 0.16	e : 0.14	= : 0.14	g : 0.09	[ : 0.07	# : 0.05	i : 0.05	d : 0.05	a : 0.03	" : 0.03	! : 0.03	b : 0.01	$ : 0.01	f : 0.01	h : 0.01	: : 0.01	
= : 0.16	c : 0.14	e : 0.11	g : 0.11	d : 0.09	# : 0.07	i : 0.07	! : 0.05	f : 0.05	" : 0.03	h : 0.03	b : 0.01	$ : 0.01	
= : 0.18	c : 0.14	g : 0.11	e : 0.09	! : 0.09	i : 0.07	d : 0.07	# : 0.07	f : 0.05	" : 0.03	h : 0.03	$ : 0.01	
= : 0.24	[ : 0.09	g : 0.09	e : 0.09	c : 0.07	i : 0.07	d : 0.07	# : 0.07	! : 0.05	f : 0.05	" : 0.03	h : 0.03	
= : 0.24	g : 0.11	d : 0.11	! : 0.09	" : 0.07	i : 0.07	e : 0.05	# : 0.05	b : 0.03	a : 0.03	c : 0.03	f : 0.03	[ : 0.01	h : 0.01	
= : 0.22	g : 0.12	b : 0.09	[ : 0.09	! : 0.07	d : 0.07	" : 0.07	i : 0.07	f : 0.05	# : 0.03	c : 0.03	h : 0.01	e : 0.01	
= : 0.20	c : 0.14	g : 0.12	d : 0.09	" : 0.09	i : 0.07	b : 0.07	f : 0.05	[ : 0.03	a : 0.03	h : 0.01	# : 0.01	e : 0.01	
c : 0.22	= : 0.18	g : 0.11	d : 0.11	! : 0.09	i : 0.05	" : 0.05	[ : 0.05	$ : 0.03	h : 0.01	b : 0.01	e : 0.01	f : 0.01	
c : 0.20	= : 0.14	! : 0.12	g : 0.09	" : 0.07	# : 0.07	d : 0.05	b : 0.05	$ : 0.03	[ : 0.03	a : 0.03	h : 0.01	i : 0.01	f : 0.01	
" : 0.18	= : 0.12	d : 0.11	! : 0.11	c : 0.09	a : 0.07	# : 0.07	g : 0.07	b : 0.07	$ : 0.03	i : 0.01	f : 0.01	
! : 0.22	" : 0.18	= : 0.11	d : 0.09	# : 0.09	[ : 0.09	g : 0.05	c : 0.05	$ : 0.03	b : 0.01	a : 0.01	f : 0.01	
d : 0.22	! : 0.16	" : 0.14	[ : 0.12	# : 0.09	= : 0.07	c : 0.05	$ : 0.03	a : 0.03	b : 0.01	g : 0.01	
c : 0.46	d : 0.33	= : 0.07	! : 0.03	[ : 0.03	b : 0.01	# : 0.01	" : 0.01	
c : 0.48	d : 0.27	[ : 0.07	= : 0.07	! : 0.01	q : 0.01	# : 0.01	b : 0.01	a : 0.01	
c : 0.53	d : 0.27	a : 0.07	= : 0.05	[ : 0.01	q : 0.01	b : 0.01	
o : 0.51	c : 0.14	d : 0.11	q : 0.07	l : 0.05	r : 0.03	m : 0.01	n : 0.01	p : 0.01	
o : 0.53	m : 0.09	l : 0.07	n : 0.07	c : 0.07	q : 0.07	r : 0.03	p : 0.01	b : 0.01	
o : 0.53	m : 0.12	l : 0.09	n : 0.07	q : 0.07	r : 0.03	c : 0.01	p : 0.01	b : 0.01	
o : 0.53	m : 0.12	n : 0.07	l : 0.07	q : 0.07	c : 0.05	r : 0.03	p : 0.01	
o : 0.53	m : 0.11	c : 0.09	n : 0.07	q : 0.07	l : 0.05	r : 0.03	p : 0.01	
o : 0.53	c : 0.12	q : 0.07	d : 0.07	n : 0.05	r : 0.03	m : 0.03	l : 0.03	p : 0.01	
c : 0.49	d : 0.24	a : 0.07	q : 0.05	r : 0.03	b : 0.03	] : 0.01	p : 0.01	o : 0.01	
c : 0.49	d : 0.27	] : 0.07	q : 0.05	r : 0.03	b : 0.03	3 : 0.01	
c : 0.48	d : 0.29	= : 0.05	] : 0.05	r : 0.03	3 : 0.01	4 : 0.01	b : 0.01	a : 0.01	
d : 0.25	3 : 0.18	c : 0.14	] : 0.12	4 : 0.09	2 : 0.05	= : 0.05	a : 0.03	b : 0.01	5 : 0.01	
3 : 0.24	c : 0.12	4 : 0.12	2 : 0.09	d : 0.09	= : 0.09	] : 0.07	b : 0.05	6 : 0.01	5 : 0.01	g : 0.01	a : 0.01	f : 0.01	
3 : 0.24	c : 0.12	4 : 0.12	= : 0.11	d : 0.09	b : 0.05	] : 0.05	a : 0.03	g : 0.03	6 : 0.03	2 : 0.03	5 : 0.01	f : 0.01	
= : 0.14	] : 0.11	c : 0.11	4 : 0.11	g : 0.09	3 : 0.07	d : 0.07	2 : 0.05	i : 0.05	a : 0.05	6 : 0.03	b : 0.03	5 : 0.01	f : 0.01	
= : 0.20	c : 0.14	g : 0.11	b : 0.09	d : 0.09	2 : 0.05	] : 0.05	i : 0.05	4 : 0.03	6 : 0.03	f : 0.03	5 : 0.01	h : 0.01	a : 0.01	e : 0.01	
= : 0.22	c : 0.14	d : 0.12	g : 0.12	b : 0.07	i : 0.05	] : 0.05	f : 0.05	a : 0.03	6 : 0.03	3 : 0.01	h : 0.01	e : 0.01	
= : 0.22	g : 0.14	d : 0.12	c : 0.09	] : 0.07	f : 0.07	i : 0.05	3 : 0.05	6 : 0.03	4 : 0.03	e : 0.03	b : 0.01	h : 0.01	
= : 0.22	g : 0.14	d : 0.12	e : 0.05	c : 0.05	i : 0.05	3 : 0.05	] : 0.05	f : 0.05	2 : 0.03	4 : 0.03	h : 0.03	a : 0.01	b : 0.01	6 : 0.01	
= : 0.24	g : 0.12	d : 0.09	e : 0.07	] : 0.07	i : 0.07	c : 0.05	2 : 0.05	f : 0.05	3 : 0.03	4 : 0.03	h : 0.03	a : 0.01	b : 0.01	
= : 0.24	g : 0.14	d : 0.11	e : 0.09	] : 0.09	f : 0.07	i : 0.07	c : 0.03	4 : 0.03	h : 0.03	a : 0.01	3 : 0.01	2 : 0.01	
= : 0.24	e : 0.16	d : 0.11	g : 0.09	i : 0.07	f : 0.05	c : 0.05	] : 0.05	3 : 0.05	h : 0.03	b : 0.01	: : 0.01	2 : 0.01	
= : 0.20	e : 0.14	d : 0.12	c : 0.09	g : 0.07	i : 0.07	2 : 0.07	3 : 0.05	f : 0.03	] : 0.03	h : 0.03	b : 0.01	: : 0.01	
] : 0.14	= : 0.14	c : 0.14	e : 0.14	d : 0.12	2 : 0.07	g : 0.05	3 : 0.03	f : 0.01	6 : 0.01	a : 0.01	: : 0.01	h : 0.01	i : 0.01	

#score	835.3704371082262
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_CDS_m1_run1.txt

#BEAR
[a!!bb[ccc[ccc!!bb[allla]bb22ccc]cccbb	chr5:137688313-137688667(+)$1	354	129	167	13.0149
heeeee[ccc!!ccc[bbbbnnnnnbb22bb]ccc]cc	chr20:33622833-33623059(-)$1	226	81	119	12.9361
ff!!a!!dddd"""a[a!!bbmmmmbb22a]a4444dd	chr19:10221639-10221943(+)$1	304	14	52	12.1797
[ccc!!dddd!!cccrrrrrrrrrccc22dddd22ccc	chr7:127334785-127335002(+)$1	217	32	70	11.3474
iiiiiiiii$$$$$cccooooooccc4444iiiiiiii	chrY:21897184-21897458(-)$1	274	231	269	12.9638
ffffff[a!!bb[bb[cccoooooocccbb]bb22a]f	chr1:19454110-19454334(-)$1	224	135	173	14.2690
a[eeeee[dddd[bb[cccooooooccc22bb]dddd]	chrM:14272-14484(-)$1	212	109	147	15.9126
cccffffff[ccc"""cccoooooocccccc]ffffff	chr10:101605284-101605528(+)$1	244	64	102	14.2936
b[ccc[ccc[cccccccccooooooccc22ccc22ccc	chr6:56380149-56380464(-)$1	315	58	96	16.1880
[bb"""ccc!!dddd[ddddmmmmdddd]dddd333cc	chr1:234565868-234566117(-)$1	249	114	152	11.2222
!!dddd!!bb[dddd[cccooooooccc]dddd4444b	chr2:63086281-63086524(+)$1	243	84	122	15.6111
ccc:ccca"""dddd[ddddllldddd]dddd333a]c	chr14:31618187-31618425(-)$1	238	57	95	11.1622
JJggggggg!!eeeee[bboooooobb22eeeeegggg	chr12:62919644-62919980(+)$1	336	103	141	12.7038
::eeeee####dddd[a[bbnnnnnbb]adddd22eee	chr10:21823473-21823713(+)$1	240	199	237	12.0721
=[ggggggg!!a[ccc[bboooooobb]ccca22gggg	chr14:104165101-104165367(+)$1	266	63	101	16.6013
gggffffff[ccc[bbcccooooooccc4444bbccc]	chr19:8538950-8539224(+)$1	274	58	96	14.1255
dd[ccc####ccc"""ddddnnnnnddddccc4444cc	chr1:19487420-19487678(-)$1	258	154	192	12.6539
eeee[ccciiiiiiiii[bbnnnnnbb22iiiiiiiii	chr20:3526308-3526553(+)$1	245	96	134	12.9406
b[eeeee[dddd[bb[cccooooooccc22bb]dddd]	chrM:14179-14384(-)$1	205	9	47	15.7421
eee$$$$$==============lll=============	chr11:62293176-62293447(-)$1	271	177	215	11.9621
##dddd"""ccc[ccc[ddddooooooddddccc]ccc	chr9:116967939-116968161(+)$1	222	68	106	12.2782
ggggggg!!dddd[bb[bboooooobbbb]dddd]ggg	chr2:54874169-54874384(+)$1	215	10	48	15.0655
[a[bbbb[bb!!ccc[cccooooooccc]ccc22bbbb	chr13:113764817-113765117(+)$1	300	16	54	13.9102
bb!!bb[a[ccc!!bb[annnnna]bb22ccc]a]bb]	chr7:152008797-152009069(-)$1	272	94	132	12.1690
e####eeeee!!dddd[aooooooa]ddddeeeeeeee	chr16:66783065-66783317(-)$1	252	202	240	12.0442
EEEccc"""dddd!!ddddoooooodddddddd4444c	chr8:100147142-100147464(+)$1	322	225	263	11.6824
ggggggg$$$$$bb!!cccooooooccc22bbgggggg	chr1:19484369-19484587(-)$1	218	83	121	15.6482
a[eeeee[dddd[bb[cccooooooccc22bb]dddd]	chrM:14232-14435(-)$1	203	60	98	15.9126
a[eeeee[dddd[bb[cccooooooccc22bb]dddd]	chrM:14225-14432(-)$1	207	57	95	15.9126
!!ffffff[bb[ccc!!bboooooobb22cccbbffff	chr9:116999160-116999413(+)$1	253	132	170	15.2607
ii[dddd$$$$$bb[ddddoooooodddd]bb4444dd	chr2:152291921-152292191(+)$1	270	38	76	13.0590
d!!eeeee[ccc[ccc[cccmmmmccc]ccc]ccc]ee	chr9:116984402-116984607(+)$1	205	127	165	12.1149
b!!eeeeedddd[a"""cccmmmmccc333adddd]ee	chr2:63053176-63053410(+)$1	234	69	107	13.1129
!!a!!ffffffdddd!!cccmmmmccc22dddd333ff	chr6:144768770-144769017(+)$1	247	24	62	12.9879
ffffff####dddd"""cccmmmmccc333dddd]fff	chr10:19569016-19569252(+)$1	236	167	205	13.3303
ccbb[ccc[dddd[ccc[aooooooa]cccdddd]ccc	chr9:117044635-117044851(+)$1	216	110	148	14.0864
ffffff[a[dddd[a"""aooooooa22a]dddd]aff	chr6:144803252-144803481(+)$1	229	78	116	15.2255
a[eeeee[dddd[bb[cccooooooccc22bb]dddd]	chrM:14254-14466(-)$1	212	91	129	15.9126
!!dddd$$$$$a[iiiiiiiiillliiiiiiiii]add	chr5:1085421-1085680(-)$1	259	158	196	11.3909
iiiiiii####dddd!!bboooooobb22dddd333ii	chr1:39916677-39916951(+)$1	274	175	213	18.3670
ddeeeee####dddd[a[bbnnnnnbb]adddd22eee	chr10:21823549-21823831(+)$1	282	123	161	13.5103
iiii==========aa[bboooooobb]a]a]======	chr3:58080555-58080781(+)$1	226	53	91	16.9243
ddddbb[a[bb[ccc!!bboooooobbccc]bb]a]bb	chr16:66783005-66783265(-)$1	260	45	83	13.9529
ddd"""ccc[ccc####bboooooobb333ccc22ccc	chr10:101603509-101603753(+)$1	244	40	78	17.0765
dd[dddd[eeeee"""cccooooooccc333eeeee22	chr9:116997788-116998032(+)$1	244	57	95	14.3810
"""ggggggga"""bb[annnnna]bb333a]gggggg	chr11:62292790-62293044(-)$1	254	24	62	13.0285
b!!dddd$$$$$eeeee[bbnnnnnbb]eeeee22ddd	chr17:62499546-62499769(-)$1	223	168	206	10.8786
CCC==========####bboooooobb==========:	chr11:47772703-47772940(-)$1	237	21	59	12.7271
eeee!!eeeee!!ccc[bboooooobb]ccc]eeeee2	chr10:19571921-19572198(+)$1	277	54	92	14.4434
ggggg===========[cccmmmmccc22=========	chr3:184102284-184102582(+)$1	298	66	104	13.9372
""a[eeeee####bb!!bboooooobb22bbeeeee]a	chr9:117044498-117044709(+)$1	211	108	146	16.0698
iiiiii[a!!a!!ddddrrrrrrrrrdddd22a22a]i	chr20:43029847-43030126(+)$1	279	37	75	10.7602

#otherMatches

#Seq PSSM
gggaggcggcgggcgggagcgcgggucaggccggcccc	chr5:137688313-137688667(+)$1	354	129	167	13.0149
GGUGCUAGAUGCCCUGAUGCGAGUGGCCAAUGAGGAGU	chr20:33622833-33623059(-)$1	226	81	119	12.9361
CCAAGUCUCCAGGGCGGAAGCGGAAGCGGUGGGAAAUG	chr19:10221639-10221943(+)$1	304	14	52	12.1797
UUGAAUGCUGAUUGGCAUCUGAAACUAGGCAGUUCUCA	chr7:127334785-127335002(+)$1	217	32	70	11.3474
AUGAUUUUGUAAUAUUCUACUUUGAACCGUCAAGAUUA	chrY:21897184-21897458(-)$1	274	231	269	12.9638
AUGAAGUCCAUCUGGUAGUAAUGAGACUCCUGAGUGUC	chr1:19454110-19454334(-)$1	224	135	173	14.2690
AGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGG	chrM:14272-14484(-)$1	212	109	147	15.9126
GGAACUAAUGUGUAAGGGAACUAUAUUCGCAGAUUGGU	chr10:101605284-101605528(+)$1	244	64	102	14.2936
UAUCUGCAGCUGGAACGGGCACAGUCCCUGGUUAACCA	chr6:56380149-56380464(-)$1	315	58	96	16.1880
UGCCUUGGCCAUGGUGUGUGAGGCCAUAGACCAGAAGC	chr1:234565868-234566117(-)$1	249	114	152	11.2222
AAUCCAUUUGAUGAUCCUGAUGCUGCAGAAUUAAAUCC	chr2:63086281-63086524(+)$1	243	84	122	15.6111
AGAAAGCCGAAGUGAAUUCUUAGAGAAGUUACAAAGAG	chr14:31618187-31618425(-)$1	238	57	95	11.1622
CUCAGUCUCAGCACCAGCUAACUCAGGAAUGGUGGGGA	chr12:62919644-62919980(+)$1	336	103	141	12.7038
UGGGCCGAGAACCCGCUGGUUUAUUGCGACGGGCACGG	chr10:21823473-21823713(+)$1	240	199	237	12.0721
CACCCCUUCGGCACUGAUCGUGUAGGAACAGGAGGAGG	chr14:104165101-104165367(+)$1	266	63	101	16.6013
CAGUCUUGUUGGAUGAUGCUGAAAUGUGAACCUCUCUU	chr19:8538950-8539224(+)$1	274	58	96	14.1255
GCUGACAAAGCCAAGGUUACCAUCAGUGAUGGAAAGGU	chr1:19487420-19487678(-)$1	258	154	192	12.6539
UCAGUGGCCUCAUUGUUCCUGAGAGAGAUGGCAAUGAG	chr20:3526308-3526553(+)$1	245	96	134	12.9406
AGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGG	chrM:14179-14384(-)$1	205	9	47	15.7421
CCCCAAAGUGGACAUUGAUGUCCCAGAUGUUAAUGUUC	chr11:62293176-62293447(-)$1	271	177	215	11.9621
UUUCCUUAUGUUUCUCUCUGUUCCUUUGCAGGGGCAGC	chr9:116967939-116968161(+)$1	222	68	106	12.2782
CUACCCUGCUGAGCAGCUGGUCUGUCACUCCUUAAGGG	chr2:54874169-54874384(+)$1	215	10	48	15.0655
ACCCGGGAGCACGGCAGGGAGGACACCCAGCCAGGCCC	chr13:113764817-113765117(+)$1	300	16	54	13.9102
CUUCAGAUGAUCAAGCUGGUAAACUGUGGGAUGAACUC	chr7:152008797-152009069(-)$1	272	94	132	12.1690
GAUGAGGACCGAGAUGGUGAGUGAAGCAUUGGUCCCAU	chr16:66783065-66783317(-)$1	252	202	240	12.0442
AAGUCCGUUUCCUCCAUCCUUUUUUGGAUAGGAUAUAG	chr8:100147142-100147464(+)$1	322	225	263	11.6824
CCUUCUUUGCCAGGUUCCCACCUUAGGGUCCCAGGAAG	chr1:19484369-19484587(-)$1	218	83	121	15.6482
AGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGG	chrM:14232-14435(-)$1	203	60	98	15.9126
AGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGG	chrM:14225-14432(-)$1	207	57	95	15.9126
ACGGGGGAAGCCAGGGCCUCUGGUAAGUACCUGCUCCU	chr9:116999160-116999413(+)$1	253	132	170	15.2607
UUUCUUUUACCCCAUAGGUUUGUGUGCCUCUGAUUCAA	chr2:152291921-152292191(+)$1	270	38	76	13.0590
GGAGUCCCCGGCCUCAUUGUAAGUACAUUGAUGCCUGG	chr9:116984402-116984607(+)$1	205	127	165	12.1149
GCUCUUGCUACUAGCAGCAUCAAUAUGAAACAGUAUGC	chr2:63053176-63053410(+)$1	234	69	107	13.1129
GGCCAGGAUGUGGGACAAUUACUUGAUAAUUCCAAGGC	chr6:144768770-144769017(+)$1	247	24	62	12.9879
UGCUACAAAAUAGAAAAUGCAAGUGUAAUCUCUAAGUA	chr10:19569016-19569252(+)$1	236	167	205	13.3303
GGCUAUCAAGGACAGCUGGGUGAGAUGGGCGUCCCUGG	chr9:117044635-117044851(+)$1	216	110	148	14.0864
CUUUCUUGGAACAGAGGGCAAAAGAGGAUGUGUUGCAG	chr6:144803252-144803481(+)$1	229	78	116	15.2255
AGGAUUGGUGCUGUGGGUGAAAGAGUAUGAUGGGGUGG	chrM:14254-14466(-)$1	212	91	129	15.9126
CUGCACAACAUGCGUGUGUACGGCACGUGCACGCUCGU	chr5:1085421-1085680(-)$1	259	158	196	11.3909
CCUCGUCAUGAACCUCAUGGAUGCACACAAGGUAGGGG	chr1:39916677-39916951(+)$1	274	175	213	18.3670
UGGGCCGAGAACCCGCUGGUUUAUUGCGACGGGCACGG	chr10:21823549-21823831(+)$1	282	123	161	13.5103
UGUGGACACCAUCAGCGCCGGGCAAGGAGACGUGAUGG	chr3:58080555-58080781(+)$1	226	53	91	16.9243
GUAGGUGAAGAUGGUUCUGGUAAAACAACCCUCAUGAC	chr16:66783005-66783265(-)$1	260	45	83	13.9529
CUGUAGAUCACACAAACCCUGAACUGGCUGGUGAGGAU	chr10:101603509-101603753(+)$1	244	40	78	17.0765
CCAUUGUAACCUUCUUUGCUGGUGUGUACUUAGGGUGA	chr9:116997788-116998032(+)$1	244	57	95	14.3810
AAUAUCAAAGCCCCCAAGAUCCCCAUGCCUGACUUUGA	chr11:62292790-62293044(-)$1	254	24	62	13.0285
CUUGUAUCUACGGUGGUGCUCCUAAGGGACCACAAAUA	chr17:62499546-62499769(-)$1	223	168	206	10.8786
GUGAUUUUGGCUUUUGAGCUUAUAUGUAAGCCAGAAUU	chr11:47772703-47772940(-)$1	237	21	59	12.7271
AAGCCUGUGUAAAUGGUAUCAACCAAUCCCAGUACAUU	chr10:19571921-19572198(+)$1	277	54	92	14.4434
UGCCCGAGGGGCUCAUAUGCUGCUGCAGAAUGAGCUCU	chr3:184102284-184102582(+)$1	298	66	104	13.9372
CAAGGUAGGUGUCCCCUUCUGACUUGAUAGGCCUGCGU	chr9:117044498-117044709(+)$1	211	108	146	16.0698
UCCCAGAGGACGGUUUGAAAGGAAGGCAGAGAGGGCAC	chr20:43029847-43030126(+)$1	279	37	75	10.7602

#DB
.(..((.(((.(((..((.(...).))..))).)))))	chr5:137688313-137688667(+)$1	1	129	167	13.0149
((((((.(((..(((.((((.....))..)).))).))	chr20:33622833-33623059(-)$1	1	81	119	12.9361
((..(..((((...(.(..((....))..).)....))	chr19:10221639-10221943(+)$1	1	14	52	12.1797
.(((..((((..(((.........)))..))))..)))	chr7:127334785-127335002(+)$1	1	32	70	11.3474
(((((((((.....(((......)))....))))))))	chrY:21897184-21897458(-)$1	1	231	269	12.9638
((((((.(..((.((.(((......))))).))..).)	chr1:19454110-19454334(-)$1	1	135	173	14.2690
(.(((((.((((.((.(((......)))..)).)))).	chrM:14272-14484(-)$1	1	109	147	15.9126
)))((((((.(((...(((......)))))).))))))	chr10:101605284-101605528(+)$1	1	64	102	14.2936
(.(((.(((.(((((((((......)))..)))..)))	chr6:56380149-56380464(-)$1	1	58	96	16.1880
.((...(((..((((.((((....)))).))))...))	chr1:234565868-234566117(-)$1	1	114	152	11.2222
..((((..((.((((.(((......))).))))....)	chr2:63086281-63086524(+)$1	1	84	122	15.6111
))).((((...((((.((((...)))).))))...).)	chr14:31618187-31618425(-)$1	1	57	95	11.1622
(((((((((..(((((.((......))..)))))))))	chr12:62919644-62919980(+)$1	1	103	141	12.7038
..(((((....((((.(.((.....)).)))))..)))	chr10:21823473-21823713(+)$1	1	199	237	12.0721
(.(((((((..(.(((.((......)).))))..))))	chr14:104165101-104165367(+)$1	1	63	101	16.6013
)))((((((.(((.(((((......)))....))))).	chr19:8538950-8539224(+)$1	1	58	96	14.1255
((.(((....(((...((((.....)))))))....))	chr1:19487420-19487678(-)$1	1	154	192	12.6539
((((.((((((((((((.((.....))..)))))))))	chr20:3526308-3526553(+)$1	1	96	134	12.9406
(.(((((.((((.((.(((......)))..)).)))).	chrM:14179-14384(-)$1	1	9	47	15.7421
(((.....((((((((((((((...)))))))))))))	chr11:62293176-62293447(-)$1	1	177	215	11.9621
..((((...(((.(((.((((......))))))).)))	chr9:116967939-116968161(+)$1	1	68	106	12.2782
(((((((..((((.((.((......)))).)))).)))	chr2:54874169-54874384(+)$1	1	10	48	15.0655
.(.((((.((..(((.(((......))).)))..))))	chr13:113764817-113765117(+)$1	1	16	54	13.9102
((..((.(.(((..((.(.....).))..))).).)).	chr7:152008797-152009069(-)$1	1	94	132	12.1690
(....(((((..((((.(......).))))))))))))	chr16:66783065-66783317(-)$1	1	202	240	12.0442
)))(((...((((..((((......))))))))....)	chr8:100147142-100147464(+)$1	1	225	263	11.6824
(((((((.....((..(((......)))..))))))))	chr1:19484369-19484587(-)$1	1	83	121	15.6482
(.(((((.((((.((.(((......)))..)).)))).	chrM:14232-14435(-)$1	1	60	98	15.9126
(.(((((.((((.((.(((......)))..)).)))).	chrM:14225-14432(-)$1	1	57	95	15.9126
..((((((.((.(((..((......))..)))))))))	chr9:116999160-116999413(+)$1	1	132	170	15.2607
((.((((.....((.((((......)))).))....))	chr2:152291921-152292191(+)$1	1	38	76	13.0590
(..(((((.(((.(((.(((....))).))).))).))	chr9:116984402-116984607(+)$1	1	127	165	12.1149
(..(((((((((.(...(((....)))...))))).))	chr2:63053176-63053410(+)$1	1	69	107	13.1129
..(..((((((((((..(((....)))..))))...))	chr6:144768770-144769017(+)$1	1	24	62	12.9879
((((((....((((...(((....)))...)))).)))	chr10:19569016-19569252(+)$1	1	167	205	13.3303
((((.(((.((((.(((.(......).))))))).)))	chr9:117044635-117044851(+)$1	1	110	148	14.0864
((((((.(.((((.(...(......)..).)))).)))	chr6:144803252-144803481(+)$1	1	78	116	15.2255
(.(((((.((((.((.(((......)))..)).)))).	chrM:14254-14466(-)$1	1	91	129	15.9126
..((((.....(.(((((((((...))))))))).)))	chr5:1085421-1085680(-)$1	1	158	196	11.3909
(((((((....((((..((......))..))))...))	chr1:39916677-39916951(+)$1	1	175	213	18.3670
(((((((....((((.(.((.....)).)))))..)))	chr10:21823549-21823831(+)$1	1	123	161	13.5103
))))((((((((((((.((......)).).).))))))	chr3:58080555-58080781(+)$1	1	53	91	16.9243
((((((.(.((.(((..((......))))).)).).))	chr16:66783005-66783265(-)$1	1	45	83	13.9529
(((...(((.(((....((......))...)))..)))	chr10:101603509-101603753(+)$1	1	40	78	17.0765
((.((((.(((((...(((......)))...)))))..	chr9:116997788-116998032(+)$1	1	57	95	14.3810
...((((((((...((.(.....).))...).))))))	chr11:62292790-62293044(-)$1	1	24	62	13.0285
(..((((.....(((((.((.....)).)))))..)))	chr17:62499546-62499769(-)$1	1	168	206	10.8786
(((((((((((((....((......)))))))))))).	chr11:47772703-47772940(-)$1	1	21	59	12.7271
((((..(((((..(((.((......)).))).))))).	chr10:19571921-19572198(+)$1	1	54	92	14.4434
((((((((((((((((.(((....)))..)))))))))	chr3:184102284-184102582(+)$1	1	66	104	13.9372
..(.(((((....((..((......))..))))))).)	chr9:117044498-117044709(+)$1	1	108	146	16.0698
((((((.(..(..((((.........))))..)..).)	chr20:43029847-43030126(+)$1	1	37	75	10.7602

#PSSM
d : 0.11	i : 0.09	b : 0.09	[ : 0.07	f : 0.07	a : 0.07	! : 0.07	g : 0.07	e : 0.07	c : 0.05	" : 0.03	h : 0.01	J : 0.01	: : 0.01	= : 0.01	# : 0.01	E : 0.01	C : 0.01	
[ : 0.13	! : 0.13	i : 0.09	d : 0.09	e : 0.07	f : 0.07	c : 0.07	g : 0.07	a : 0.03	b : 0.03	# : 0.03	" : 0.03	J : 0.01	: : 0.01	E : 0.01	C : 0.01	
e : 0.21	! : 0.11	g : 0.11	d : 0.09	c : 0.07	i : 0.07	f : 0.07	[ : 0.07	b : 0.03	a : 0.03	# : 0.01	E : 0.01	" : 0.01	C : 0.01	
e : 0.23	d : 0.13	f : 0.11	g : 0.11	! : 0.07	c : 0.07	i : 0.07	" : 0.03	b : 0.03	: : 0.01	$ : 0.01	# : 0.01	= : 0.01	[ : 0.01	
e : 0.21	f : 0.11	d : 0.11	g : 0.11	b : 0.07	c : 0.07	! : 0.05	i : 0.05	" : 0.03	[ : 0.03	= : 0.03	a : 0.01	$ : 0.01	# : 0.01	
e : 0.23	f : 0.13	d : 0.11	c : 0.09	g : 0.09	b : 0.07	! : 0.05	i : 0.05	= : 0.05	" : 0.03	[ : 0.01	$ : 0.01	
e : 0.23	[ : 0.13	c : 0.11	g : 0.09	d : 0.07	f : 0.07	= : 0.05	! : 0.03	i : 0.03	# : 0.03	$ : 0.03	" : 0.03	b : 0.01	
c : 0.13	[ : 0.13	a : 0.11	# : 0.09	$ : 0.09	e : 0.09	f : 0.07	g : 0.05	= : 0.05	d : 0.03	! : 0.03	" : 0.03	i : 0.01	
d : 0.15	[ : 0.11	c : 0.09	# : 0.09	= : 0.07	e : 0.07	$ : 0.07	! : 0.05	f : 0.05	" : 0.05	g : 0.05	i : 0.03	b : 0.03	
d : 0.23	# : 0.11	c : 0.09	$ : 0.09	! : 0.09	[ : 0.07	b : 0.07	= : 0.07	e : 0.05	" : 0.01	i : 0.01	f : 0.01	g : 0.01	
d : 0.23	c : 0.15	! : 0.13	$ : 0.09	# : 0.07	= : 0.07	b : 0.05	[ : 0.03	e : 0.03	a : 0.03	" : 0.01	i : 0.01	f : 0.01	
d : 0.34	c : 0.17	! : 0.11	$ : 0.07	= : 0.07	" : 0.03	e : 0.03	a : 0.03	[ : 0.03	b : 0.01	i : 0.01	# : 0.01	
d : 0.24	c : 0.21	[ : 0.21	= : 0.07	e : 0.05	! : 0.05	" : 0.03	b : 0.03	$ : 0.01	i : 0.01	# : 0.01	
c : 0.21	d : 0.19	b : 0.17	" : 0.09	[ : 0.07	= : 0.05	e : 0.03	i : 0.03	! : 0.03	# : 0.03	$ : 0.01	a : 0.01	
c : 0.23	b : 0.21	d : 0.17	" : 0.09	! : 0.05	a : 0.05	e : 0.03	i : 0.03	= : 0.03	# : 0.03	[ : 0.01	
[ : 0.26	! : 0.13	c : 0.13	" : 0.11	b : 0.07	d : 0.07	e : 0.03	i : 0.03	= : 0.03	# : 0.03	r : 0.01	a : 0.01	
c : 0.28	[ : 0.21	d : 0.11	! : 0.09	a : 0.05	" : 0.05	b : 0.03	i : 0.03	# : 0.03	r : 0.01	= : 0.01	e : 0.01	
c : 0.34	b : 0.24	d : 0.11	[ : 0.09	a : 0.05	r : 0.03	! : 0.01	o : 0.01	= : 0.01	" : 0.01	i : 0.01	
c : 0.34	b : 0.30	d : 0.11	r : 0.03	o : 0.03	n : 0.03	a : 0.03	[ : 0.01	! : 0.01	= : 0.01	i : 0.01	
o : 0.57	b : 0.11	c : 0.09	d : 0.07	r : 0.03	n : 0.03	a : 0.01	= : 0.01	i : 0.01	
o : 0.57	n : 0.15	m : 0.11	l : 0.03	r : 0.03	b : 0.01	= : 0.01	d : 0.01	i : 0.01	
o : 0.59	n : 0.15	m : 0.13	l : 0.03	r : 0.03	= : 0.01	i : 0.01	
o : 0.59	n : 0.15	m : 0.13	l : 0.07	r : 0.03	
o : 0.57	m : 0.13	n : 0.11	a : 0.05	r : 0.03	l : 0.03	c : 0.01	d : 0.01	
o : 0.55	c : 0.13	n : 0.11	] : 0.05	d : 0.03	l : 0.03	m : 0.01	a : 0.01	r : 0.01	
b : 0.38	c : 0.38	d : 0.09	a : 0.03	= : 0.01	o : 0.01	] : 0.01	i : 0.01	r : 0.01	
b : 0.38	c : 0.36	d : 0.13	4 : 0.01	= : 0.01	o : 0.01	] : 0.01	2 : 0.01	i : 0.01	
c : 0.28	2 : 0.24	] : 0.15	d : 0.13	3 : 0.07	= : 0.03	4 : 0.01	b : 0.01	i : 0.01	
2 : 0.36	d : 0.13	c : 0.11	3 : 0.09	a : 0.07	] : 0.05	4 : 0.03	b : 0.03	= : 0.03	i : 0.01	e : 0.01	
d : 0.23	c : 0.21	2 : 0.13	3 : 0.09	] : 0.07	b : 0.05	= : 0.05	4 : 0.03	e : 0.03	i : 0.03	a : 0.01	
d : 0.26	c : 0.21	b : 0.17	] : 0.05	i : 0.05	e : 0.05	= : 0.05	a : 0.05	4 : 0.01	3 : 0.01	2 : 0.01	
d : 0.26	b : 0.17	c : 0.15	] : 0.11	e : 0.09	i : 0.05	= : 0.05	a : 0.03	4 : 0.01	2 : 0.01	
d : 0.24	] : 0.13	e : 0.11	c : 0.09	b : 0.07	= : 0.07	4 : 0.05	i : 0.05	2 : 0.03	g : 0.03	f : 0.01	3 : 0.01	a : 0.01	
2 : 0.19	d : 0.19	4 : 0.09	e : 0.09	c : 0.07	3 : 0.07	= : 0.07	i : 0.05	b : 0.03	g : 0.03	f : 0.01	a : 0.01	] : 0.01	
2 : 0.15	] : 0.13	d : 0.11	4 : 0.09	c : 0.07	3 : 0.07	g : 0.07	= : 0.07	e : 0.07	i : 0.03	f : 0.03	b : 0.01	a : 0.01	
c : 0.13	d : 0.11	e : 0.11	4 : 0.09	a : 0.09	g : 0.09	] : 0.07	= : 0.07	f : 0.05	3 : 0.05	i : 0.03	b : 0.03	
c : 0.17	d : 0.17	e : 0.11	f : 0.09	g : 0.09	b : 0.07	] : 0.07	= : 0.07	i : 0.05	4 : 0.03	2 : 0.01	
c : 0.19	] : 0.13	f : 0.11	g : 0.09	e : 0.09	b : 0.07	d : 0.07	i : 0.07	= : 0.05	2 : 0.03	: : 0.01	a : 0.01	

#score	717.0650198890844
#seq	52
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_transcript_m1_run2.txt

#BEAR
ggg[eeeeeuuuuuuuuuuuueeeee]gg	chr20:62271469-62271731(-)$1	262	164	193	21.8758
eeee"""ccctttttttttttccc]eeee	chr16:30751653-30751961(+)$1	308	2	31	19.9277
iiii[bb^^^^^^^^^^^^^^^^^^^^^^	chr1:226171529-226171756(-)$1	227	164	193	22.3515
fffff!!bbvvvvvvvvvvvvvbb333ff	chr8:21863149-21863393(+)$1	244	66	95	22.5161
==========ttttttttttt========	chr17:40724347-40724596(-)$1	249	182	211	21.0761
ffff^^^^^^^^^^^^^^^^^^^^^^fff	chr1:228286616-228286843(+)$1	227	168	197	21.6594
accc[eeeeeuuuuuuuuuuuueeeee22	chr3:48555821-48556137(-)$1	316	63	92	21.2950
####ddddbbuuuuuuuuuuuubb4444d	chr19:47990882-47991292(-)$1	410	305	334	21.4788
iiiiiiiiixxxxxxxxxxxxxxxiiiii	chr1:6161008-6161286(+)$1	278	12	41	21.4399
gggggggddddtttttttttttdddd]gg	chr5:138704575-138704841(+)$1	266	36	65	19.0952
eeeeeee[bbuuuuuuuuuuuubbeeeee	chr12:120118504-120118776(+)$1	272	9	38	21.4118
ddd[ddddwwwwwwwwwwwwwwdddd]dd	chr7:935435-935712(+)$1	277	156	185	21.6510
eeee^^^^^^^^^^^^^^^^^^^^^^^ee	chr7:44872664-44872918(-)$1	254	57	86	22.3701
iiii[ddddvvvvvvvvvvvvvdddd]ii	chr2:10270679-10270908(+)$1	229	64	93	23.2663
c[ccc^^^^^^^^^^^^^^^^^^ccc]cc	chr19:1587432-1587679(-)$1	247	77	106	22.0808
====!!bbyyyyyyyyyyyyyyyybb22=	chr7:135613615-135613880(-)$1	265	63	92	23.4099
=========xxxxxxxxxxxxxxx=====	chr6:160526981-160527344(+)$1	363	327	356	22.2690
iiiiiiiiiyyyyyyyyyyyyyyyyiiii	chr1:15988327-15988580(+)$1	253	146	175	23.9787
eeee^^^^^^^^^^^^^^^^^^^^eeeee	chr15:52840801-52841072(-)$1	271	194	223	21.9414
###cccdddduuuuuuuuuuuudddd]cc	chr22:22276997-22277226(-)$1	229	61	90	21.4411
==========uuuuuuuuuuuu=======	chr12:57979056-57979328(+)$1	272	189	218	23.6987
cc!!eeeeewwwwwwwwwwwwwweeeee]	chr14:104161458-104161700(+)$1	242	76	105	22.8316
eeee[ddddvvvvvvvvvvvvvdddd]ee	chr15:58246526-58246816(-)$1	290	56	85	22.6484
eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr7:5037232-5037478(+)$1	246	93	122	22.4570
======^^^^^^^^^^^^^^^^^^^^===	chr22:38687112-38687353(-)$1	241	159	188	23.5570
c[ccc^^^^^^^^^^^^^^^^^^ccc]cc	chr10:75008834-75009054(-)$1	220	50	79	22.0808
=========wwwwwwwwwwwwww======	chr9:116169610-116169837(-)$1	227	167	196	24.6346
eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr19:6414514-6414748(-)$1	234	21	50	22.4570
ffggggggg^^^^^^^^^^^^^^^^^^^^	chr1:21923507-21923724(-)$1	217	48	77	21.4458
[eeeee[bbvvvvvvvvvvvvvbb]eeee	chr1:36826772-36827002(-)$1	230	192	221	22.4348
eeeee^^^^^^^^^^^^^^^^^^^eeeee	chr6:41902955-41903206(-)$1	251	150	179	21.9955
eeee^^^^^^^^^^^^^^^^^^^^eeeee	chrX:48436497-48436753(+)$1	256	172	201	21.9414
ccc[ffffffuuuuuuuuuuuuffffff]	chr21:45180492-45180744(+)$1	252	185	214	20.6016
iiiiiiiiixxxxxxxxxxxxxxxiiiii	chr2:70523129-70523423(-)$1	294	227	256	21.4399
f!!a[ddddvvvvvvvvvvvvvdddd]a]	chr17:71280056-71280307(-)$1	251	166	195	22.7629
ccc[cccyyyyyyyyyyyyyyyyccc]cc	chr13:45007895-45008140(-)$1	245	140	169	23.6412
ggggggg^^^^^^^^^^^^^^^^^^^^^^	chr15:64975571-64975811(+)$1	240	151	180	22.4655
eeee^^^^^^^^^^^^^^^^^^^^^eeee	chr3:156259191-156259445(-)$1	254	43	72	22.2266
hhh[eeeeevvvvvvvvvvvvveeeee]h	chr1:201104323-201104543(-)$1	220	153	182	21.9613
=========vvvvvvvvvvvvv=======	chr19:18687913-18688156(+)$1	243	141	170	24.5445
fffggggggguuuuuuuuuuuuggggggg	chr22:22277061-22277314(-)$1	253	6	35	21.4024
dd[bb!!bbwwwwwwwwwwwwwwbb22bb	chr20:35380609-35380870(-)$1	261	222	251	21.3471
=========yyyyyyyyyyyyyyyy====	chr1:183521454-183521690(+)$1	236	180	209	24.7371
cc!!eeeeevvvvvvvvvvvvveeeee22	chr8:41512062-41512324(-)$1	262	13	42	22.3063
dddffffffwwwwwwwwwwwwwwffffff	chr19:39875719-39876006(+)$1	287	51	80	21.1252
:ccc!!cccvvvvvvvvvvvvvccc22cc	chr22:21305514-21305759(+)$1	245	55	84	22.3196
c"""eeeeewwwwwwwwwwwwwweeeee2	chr6:163988204-163988445(+)$1	241	135	164	22.4866
iii[cccyyyyyyyyyyyyyyyyccc]ii	chr5:79437576-79437823(-)$1	247	176	205	24.0725
""bb!!cccvvvvvvvvvvvvvccc22bb	chr17:1421585-1421883(-)$1	298	164	193	22.2487
ccc!!dddduuuuuuuuuuuuddddccc]	chr2:86367664-86367975(+)$1	311	226	255	21.4470
h!!ccccccvvvvvvvvvvvvvccc]ccc	chr19:39432638-39432893(-)$1	255	190	219	23.0582
ccc[cccyyyyyyyyyyyyyyyyccc]cc	chr17:40177274-40177560(+)$1	286	146	175	23.6412
eeee^^^^^^^^^^^^^^^^^^^^^eeee	chr12:56388229-56388462(+)$1	233	50	79	22.2266
iiiiiiiiivvvvvvvvvvvvviiiiiii	chr22:21306334-21306624(+)$1	290	21	50	23.5456
eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr4:77979586-77979804(-)$1	218	66	95	22.4570
======[bbvvvvvvvvvvvvvbb]====	chr12:123255078-123255313(+)$1	235	137	166	23.8148
eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr1:156885483-156885737(+)$1	254	41	70	22.4570
eeee[ddddyyyyyyyyyyyyyyyydddd	chr22:24812500-24812743(+)$1	243	131	160	22.5032
##ccc[cccvvvvvvvvvvvvvccc22cc	chr16:2227341-2227577(+)$1	236	200	229	22.9829
ddgggggggyyyyyyyyyyyyyyyygggg	chr10:29710938-29711229(+)$1	291	221	250	23.1367
!ccc!!bb^^^^^^^^^^^^^^^^^^^^^	chr10:45952059-45952323(-)$1	264	7	36	21.9938
::gggggggvvvvvvvvvvvvvggggggg	chrX:41207836-41208085(+)$1	249	19	48	20.7236
:ccc[dddduuuuuuuuuuuudddd]ccc	chr1:43829000-43829252(-)$1	252	146	175	20.2645
eeee[ccc^^^^^^^^^^^^^^^^^^^^^	chr19:12810010-12810236(-)$1	226	69	98	22.2281
iiiiiiiiivvvvvvvvvvvvviiiiiii	chr1:31342493-31342760(-)$1	267	144	173	23.5456
=====^^^^^^^^^^^^^^^^^^^^^===	chr15:41573470-41573732(+)$1	262	15	44	23.5773
dddd[cccyyyyyyyyyyyyyyyyccc22	chr14:103194822-103195075(+)$1	253	198	227	22.7444
=========vvvvvvvvvvvvv=======	chr1:110597067-110597331(+)$1	264	149	178	24.5445

#otherMatches

#Seq PSSM
GGAGGCUGUCUUUGUACCACUGCAGCAUC	chr20:62271469-62271731(-)$1	262	164	193	21.8758
AAGUCACAGAUAUCCUUUUCCUCUCAUUU	chr16:30751653-30751961(+)$1	308	2	31	19.9277
gcaaacauuuguuuuuuuuccucuuaaua	chr1:226171529-226171756(-)$1	227	164	193	22.3515
UCCUGUUACUGUAUUAACCCUUGUUAUUA	chr8:21863149-21863393(+)$1	244	66	95	22.5161
GAUUUUGAGGCUCAGUUAAUAUUUCAAAA	chr17:40724347-40724596(-)$1	249	182	211	21.0761
CGUGGAACCUCUUACUGCUUUCAAUACAC	chr1:228286616-228286843(+)$1	227	168	197	21.6594
CCGCAGCACAGCCUUCCAUUCAUGUGCAC	chr3:48555821-48556137(-)$1	316	63	92	21.2950
CCACACCUGCUCCUUCCCUAAUGCUUUGA	chr19:47990882-47991292(-)$1	410	305	334	21.4788
GACAGGGGCUUCCUCCCACCUUCUGUCCU	chr1:6161008-6161286(+)$1	278	12	41	21.4399
UAGUCUUGCAUGCUUAAUAAAAGUGCUGA	chr5:138704575-138704841(+)$1	266	36	65	19.0952
GGGACUGAGGCCACACAUCAUUUCCAGUC	chr12:120118504-120118776(+)$1	272	9	38	21.4118
CCUGCGCCACAUCCUCACGCUCGGUGGAG	chr7:935435-935712(+)$1	277	156	185	21.6510
gacucccucucaaaacaaacaaaaaaaag	chr7:44872664-44872918(-)$1	254	57	86	22.3701
AGAAUGAAACAUAAuuuuuuuuuuuuuuu	chr2:10270679-10270908(+)$1	229	64	93	23.2663
aucuaugcaaaaaauuuaaaaauuagcug	chr19:1587432-1587679(-)$1	247	77	106	22.0808
AGAGAACAGUUAUCUUAGUACCUAUGGAU	chr7:135613615-135613880(-)$1	265	63	92	23.4099
GCGCUGCUGGUGUUCUUAUUCUGGCGGCA	chr6:160526981-160527344(+)$1	363	327	356	22.2690
UUUUAUUCUCAUUAAGAUGUAUCCUGGAA	chr1:15988327-15988580(+)$1	253	146	175	23.9787
ugaacccuuuaucaacuauguuuuuucag	chr15:52840801-52841072(-)$1	271	194	223	21.9414
ACGGCAGCCAAACCAAAGACACUGGUGUG	chr22:22276997-22277226(-)$1	229	61	90	21.4411
GAGGACUGUUGUUUUAGUUUCAGACGGUC	chr12:57979056-57979328(+)$1	272	189	218	23.6987
guaauccuauaaucuuagcacuuugggag	chr14:104161458-104161700(+)$1	242	76	105	22.8316
UUUCUUUUACCCAUAAAUAACAUGAAUGA	chr15:58246526-58246816(-)$1	290	56	85	22.6484
GAAUUCUUCCUCCCCUCCCCCACACCauu	chr7:5037232-5037478(+)$1	246	93	122	22.4570
ACCGGUCCCCCCCUAGCCCGUCAUCAGCC	chr22:38687112-38687353(-)$1	241	159	188	23.5570
AACUUGUAAGGAAAAAUAAUAUAAAGAUA	chr10:75008834-75009054(-)$1	220	50	79	22.0808
CAAGCGCUUUUUGUUUCUAAGUUGAGUGC	chr9:116169610-116169837(-)$1	227	167	196	24.6346
GGUUUUUGUUCUUUUUAUUCUUUUAUUUU	chr19:6414514-6414748(-)$1	234	21	50	22.4570
CCGUGGGCUGCCCCCUGCCUCCCCACCCU	chr1:21923507-21923724(-)$1	217	48	77	21.4458
ACCUUUGGGAAAAAUGGGUGGGCUGGGAG	chr1:36826772-36827002(-)$1	230	192	221	22.4348
AAGGCUCAUUUUAAUUUAUUAAUUGCUUU	chr6:41902955-41903206(-)$1	251	150	179	21.9955
UGAGAACAAACUGCUUUAUUCUUACUCAG	chrX:48436497-48436753(+)$1	256	172	201	21.9414
CCGGGCAUCCCAUCACCCACCAGGGUGCA	chr21:45180492-45180744(+)$1	252	185	214	20.6016
UAUAGCCUGUCCGUUUGCUGUUUCCAGGC	chr2:70523129-70523423(-)$1	294	227	256	21.4399
GACUGCCGGUUAUUUUUCUGUCCUGGGAA	chr17:71280056-71280307(-)$1	251	166	195	22.7629
UAUAUAGAUCUACAUAAAAACUGCUACAU	chr13:45007895-45008140(-)$1	245	140	169	23.6412
GGCAGGGCCCCAAAACAGCCUCCCUCAUA	chr15:64975571-64975811(+)$1	240	151	180	22.4655
ggugaaaccccgucucuacuaaaaauacc	chr3:156259191-156259445(-)$1	254	43	72	22.2266
GAAAGCAUGGCCCAGCAUUCAGCAUGUGU	chr1:201104323-201104543(-)$1	220	153	182	21.9613
UGAGUUCUUAACUGAUCGAAUGAaggauu	chr19:18687913-18688156(+)$1	243	141	170	24.5445
CGUCCUGGUGGCUGUGGAACUGCACUGGG	chr22:22277061-22277314(-)$1	253	6	35	21.4024
ccugucuacaaaaaauacaaaaaguuagc	chr20:35380609-35380870(-)$1	261	222	251	21.3471
GAGGUUGGUGGUGACAGGAUGGGGAACCG	chr1:183521454-183521690(+)$1	236	180	209	24.7371
UUCAAGCACUAUAUCAUAGUCCGUGUUCA	chr8:41512062-41512324(-)$1	262	13	42	22.3063
CCUCUUGCACACUCAUCAACCUAUGCAAG	chr19:39875719-39876006(+)$1	287	51	80	21.1252
CUCCCAAGCAAAGGAAAUGCAAGCUCUGG	chr22:21305514-21305759(+)$1	245	55	84	22.3196
CAAGUACUUAGCUAAAAUCAACAAAGUGA	chr6:163988204-163988445(+)$1	241	135	164	22.4866
UUGUAAAUUCCAUUAAAUUUCCUUUUUUA	chr5:79437576-79437823(-)$1	247	176	205	24.0725
UCCUCCUCACCCACCUCCAAACUGACUAG	chr17:1421585-1421883(-)$1	298	164	193	22.2487
GGAAAUAGCCUAUUAAAAAAUGCUGUCCA	chr2:86367664-86367975(+)$1	311	226	255	21.4470
UUGCCUGCAAAUUUUCUUCUCCUGCAAGG	chr19:39432638-39432893(-)$1	255	190	219	23.0582
GCAGAGUAAGCUUAUUACCCACAACUGUG	chr17:40177274-40177560(+)$1	286	146	175	23.6412
GGGAUCUUAGUUUUCUUUUGUUUAUUUCC	chr12:56388229-56388462(+)$1	233	50	79	22.2266
CGUGGUUCAUCCCGGCCCAUGUUGAGCCA	chr22:21306334-21306624(+)$1	290	21	50	23.5456
CAAGUACCAAUUCAACCUUUACCCAGAAA	chr4:77979586-77979804(-)$1	218	66	95	22.4570
UAAGUUGCUGUGGACACUUUUAAGAAACU	chr12:123255078-123255313(+)$1	235	137	166	23.8148
ugccucccccacuagacuguaagcucccu	chr1:156885483-156885737(+)$1	254	41	70	22.4570
GGUCUGCAGUUCCCAACUUUAUCCCUUGC	chr22:24812500-24812743(+)$1	243	131	160	22.5032
GAAUGACCACACAACACAGCCUUGGACCA	chr16:2227341-2227577(+)$1	236	200	229	22.9829
UUGGCCGGUGAAAGAAUAAAAGAAAGCUG	chr10:29710938-29711229(+)$1	291	221	250	23.1367
ACCACCUGUACCAUUUUCAUAAAACAAAA	chr10:45952059-45952323(-)$1	264	7	36	21.9938
GCCUGCCAUAAAUGAAAUUGAAAUGGUAG	chrX:41207836-41208085(+)$1	249	19	48	20.7236
ACUUGUGUCUUAAUUAAAAGUGACAGAGG	chr1:43829000-43829252(-)$1	252	146	175	20.2645
AGCCACAGUCCCUCUUUCCCUCCUCACCC	chr19:12810010-12810236(-)$1	226	69	98	22.2281
GGGGGUCUGCCAUUCCCUCCCCCAGGCCU	chr1:31342493-31342760(-)$1	267	144	173	23.5456
UGUUUAGACCACUGCUAAUCCCUUAAAAA	chr15:41573470-41573732(+)$1	262	15	44	23.5773
GAUCUGUAUUCUGCACUAUCCCUUUACUU	chr14:103194822-103195075(+)$1	253	198	227	22.7444
UUAAUGUGAUUGUGUAUUCUGUUUACAUU	chr1:110597067-110597331(+)$1	264	149	178	24.5445

#DB
(((.(((((............))))).))	chr20:62271469-62271731(-)$1	1	164	193	21.8758
((((...(((...........))).))))	chr16:30751653-30751961(+)$1	1	2	31	19.9277
((((.((......................	chr1:226171529-226171756(-)$1	1	164	193	22.3515
(((((..((.............))...))	chr8:21863149-21863393(+)$1	1	66	95	22.5161
((((((((((...........))))))))	chr17:40724347-40724596(-)$1	1	182	211	21.0761
((((......................)))	chr1:228286616-228286843(+)$1	1	168	197	21.6594
((((.(((((............)))))..	chr3:48555821-48556137(-)$1	1	63	92	21.2950
....((((((............))....)	chr19:47990882-47991292(-)$1	1	305	334	21.4788
(((((((((...............)))))	chr1:6161008-6161286(+)$1	1	12	41	21.4399
(((((((((((...........)))).))	chr5:138704575-138704841(+)$1	1	36	65	19.0952
(((((((.((............)))))))	chr12:120118504-120118776(+)$1	1	9	38	21.4118
(((.((((..............)))).))	chr7:935435-935712(+)$1	1	156	185	21.6510
((((.......................))	chr7:44872664-44872918(-)$1	1	57	86	22.3701
((((.((((.............)))).))	chr2:10270679-10270908(+)$1	1	64	93	23.2663
(.(((..................))).))	chr19:1587432-1587679(-)$1	1	77	106	22.0808
((((..((................))..)	chr7:135613615-135613880(-)$1	1	63	92	23.4099
(((((((((...............)))))	chr6:160526981-160527344(+)$1	1	327	356	22.2690
(((((((((................))))	chr1:15988327-15988580(+)$1	1	146	175	23.9787
((((....................)))))	chr15:52840801-52841072(-)$1	1	194	223	21.9414
...(((((((............)))).))	chr22:22276997-22277226(-)$1	1	61	90	21.4411
((((((((((............)))))))	chr12:57979056-57979328(+)$1	1	189	218	23.6987
((..(((((..............))))).	chr14:104161458-104161700(+)$1	1	76	105	22.8316
((((.((((.............)))).))	chr15:58246526-58246816(-)$1	1	56	85	22.6484
(((((........................	chr7:5037232-5037478(+)$1	1	93	122	22.4570
((((((....................)))	chr22:38687112-38687353(-)$1	1	159	188	23.5570
(.(((..................))).))	chr10:75008834-75009054(-)$1	1	50	79	22.0808
(((((((((..............))))))	chr9:116169610-116169837(-)$1	1	167	196	24.6346
(((((........................	chr19:6414514-6414748(-)$1	1	21	50	22.4570
(((((((((....................	chr1:21923507-21923724(-)$1	1	48	77	21.4458
.(((((.((.............)).))))	chr1:36826772-36827002(-)$1	1	192	221	22.4348
(((((...................)))))	chr6:41902955-41903206(-)$1	1	150	179	21.9955
((((....................)))))	chrX:48436497-48436753(+)$1	1	172	201	21.9414
(((.((((((............)))))).	chr21:45180492-45180744(+)$1	1	185	214	20.6016
(((((((((...............)))))	chr2:70523129-70523423(-)$1	1	227	256	21.4399
(..(.((((.............)))).).	chr17:71280056-71280307(-)$1	1	166	195	22.7629
(((.(((................))).))	chr13:45007895-45008140(-)$1	1	140	169	23.6412
(((((((......................	chr15:64975571-64975811(+)$1	1	151	180	22.4655
((((.....................))))	chr3:156259191-156259445(-)$1	1	43	72	22.2266
(((.(((((.............))))).)	chr1:201104323-201104543(-)$1	1	153	182	21.9613
(((((((((.............)))))))	chr19:18687913-18688156(+)$1	1	141	170	24.5445
((((((((((............)))))))	chr22:22277061-22277314(-)$1	1	6	35	21.4024
((.((..((..............))..))	chr20:35380609-35380870(-)$1	1	222	251	21.3471
(((((((((................))))	chr1:183521454-183521690(+)$1	1	180	209	24.7371
((..(((((.............)))))..	chr8:41512062-41512324(-)$1	1	13	42	22.3063
)))((((((..............))))))	chr19:39875719-39876006(+)$1	1	51	80	21.1252
.(((..(((.............)))..))	chr22:21305514-21305759(+)$1	1	55	84	22.3196
(...(((((..............))))).	chr6:163988204-163988445(+)$1	1	135	164	22.4866
(((.(((................))).))	chr5:79437576-79437823(-)$1	1	176	205	24.0725
..((..(((.............)))..))	chr17:1421585-1421883(-)$1	1	164	193	22.2487
(((..((((............))))))).	chr2:86367664-86367975(+)$1	1	226	255	21.4470
(..((((((.............))).)))	chr19:39432638-39432893(-)$1	1	190	219	23.0582
(((.(((................))).))	chr17:40177274-40177560(+)$1	1	146	175	23.6412
((((.....................))))	chr12:56388229-56388462(+)$1	1	50	79	22.2266
(((((((((.............)))))))	chr22:21306334-21306624(+)$1	1	21	50	23.5456
(((((........................	chr4:77979586-77979804(-)$1	1	66	95	22.4570
((((((.((.............)).))))	chr12:123255078-123255313(+)$1	1	137	166	23.8148
(((((........................	chr1:156885483-156885737(+)$1	1	41	70	22.4570
((((.((((................))))	chr22:24812500-24812743(+)$1	1	131	160	22.5032
..(((.(((.............)))..))	chr16:2227341-2227577(+)$1	1	200	229	22.9829
))(((((((................))))	chr10:29710938-29711229(+)$1	1	221	250	23.1367
.(((..((.....................	chr10:45952059-45952323(-)$1	1	7	36	21.9938
..(((((((.............)))))))	chrX:41207836-41208085(+)$1	1	19	48	20.7236
.(((.((((............)))).)))	chr1:43829000-43829252(-)$1	1	146	175	20.2645
((((.(((.....................	chr19:12810010-12810236(-)$1	1	69	98	22.2281
(((((((((.............)))))))	chr1:31342493-31342760(-)$1	1	144	173	23.5456
(((((.....................)))	chr15:41573470-41573732(+)$1	1	15	44	23.5773
((((.(((................)))..	chr14:103194822-103195075(+)$1	1	198	227	22.7444
(((((((((.............)))))))	chr1:110597067-110597331(+)$1	1	149	178	24.5445

#PSSM
e : 0.22	= : 0.16	c : 0.13	i : 0.11	f : 0.07	d : 0.07	g : 0.04	# : 0.04	: : 0.04	h : 0.02	a : 0.01	[ : 0.01	" : 0.01	! : 0.01	
e : 0.23	= : 0.16	c : 0.14	i : 0.11	d : 0.07	f : 0.05	g : 0.04	# : 0.04	[ : 0.02	! : 0.02	" : 0.02	h : 0.01	: : 0.01	
e : 0.23	= : 0.16	c : 0.16	i : 0.11	g : 0.08	! : 0.05	f : 0.04	d : 0.04	# : 0.02	h : 0.01	[ : 0.01	" : 0.01	b : 0.01	
e : 0.23	= : 0.16	c : 0.13	[ : 0.10	i : 0.10	g : 0.08	f : 0.04	! : 0.04	b : 0.02	# : 0.01	a : 0.01	" : 0.01	d : 0.01	
e : 0.17	= : 0.14	[ : 0.13	c : 0.11	^ : 0.08	g : 0.08	i : 0.07	! : 0.07	f : 0.04	d : 0.02	" : 0.01	b : 0.01	
^ : 0.20	= : 0.13	e : 0.11	d : 0.11	c : 0.10	! : 0.08	g : 0.08	i : 0.07	f : 0.02	" : 0.01	b : 0.01	[ : 0.01	
^ : 0.22	d : 0.13	c : 0.13	e : 0.10	= : 0.10	g : 0.08	i : 0.07	b : 0.04	! : 0.02	[ : 0.02	f : 0.02	" : 0.01	
^ : 0.25	d : 0.14	c : 0.10	= : 0.10	e : 0.08	b : 0.08	i : 0.07	g : 0.05	y : 0.04	f : 0.02	[ : 0.01	
^ : 0.27	d : 0.11	= : 0.10	e : 0.08	b : 0.08	c : 0.07	i : 0.07	y : 0.07	g : 0.05	f : 0.02	w : 0.01	
^ : 0.29	v : 0.25	y : 0.13	w : 0.08	u : 0.04	x : 0.04	= : 0.02	b : 0.02	d : 0.02	c : 0.01	e : 0.01	f : 0.01	g : 0.01	
^ : 0.29	v : 0.25	u : 0.14	y : 0.13	w : 0.08	x : 0.04	t : 0.02	d : 0.01	
^ : 0.29	v : 0.25	u : 0.14	y : 0.13	w : 0.08	t : 0.04	x : 0.04	
^ : 0.29	v : 0.25	u : 0.14	y : 0.13	w : 0.08	t : 0.04	x : 0.04	
^ : 0.29	v : 0.25	u : 0.14	y : 0.13	w : 0.08	t : 0.04	x : 0.04	
^ : 0.29	v : 0.25	u : 0.14	y : 0.13	w : 0.08	t : 0.04	x : 0.04	
^ : 0.29	v : 0.25	u : 0.14	y : 0.13	w : 0.08	t : 0.04	x : 0.04	
^ : 0.29	v : 0.25	u : 0.14	y : 0.13	w : 0.08	t : 0.04	x : 0.04	
^ : 0.29	v : 0.25	u : 0.14	y : 0.13	w : 0.08	t : 0.04	x : 0.04	
^ : 0.29	v : 0.25	u : 0.14	y : 0.13	w : 0.08	t : 0.04	x : 0.04	
^ : 0.29	v : 0.25	u : 0.14	y : 0.13	w : 0.08	t : 0.04	x : 0.04	
^ : 0.29	v : 0.25	u : 0.14	y : 0.13	w : 0.08	t : 0.04	x : 0.04	
^ : 0.29	v : 0.25	y : 0.13	u : 0.10	w : 0.08	x : 0.04	d : 0.02	e : 0.01	c : 0.01	= : 0.01	t : 0.01	
^ : 0.29	y : 0.13	d : 0.11	c : 0.07	b : 0.07	w : 0.07	e : 0.05	= : 0.05	x : 0.04	g : 0.02	i : 0.02	f : 0.01	
^ : 0.26	c : 0.14	d : 0.11	e : 0.08	b : 0.08	y : 0.08	= : 0.07	x : 0.04	f : 0.02	g : 0.02	i : 0.02	
^ : 0.22	e : 0.14	c : 0.14	d : 0.11	= : 0.08	i : 0.05	y : 0.05	] : 0.04	b : 0.02	f : 0.02	g : 0.02	3 : 0.01	4 : 0.01	
e : 0.20	^ : 0.19	= : 0.11	d : 0.10	c : 0.10	i : 0.07	2 : 0.05	g : 0.04	f : 0.02	] : 0.02	3 : 0.01	4 : 0.01	b : 0.01	
e : 0.19	] : 0.17	^ : 0.14	= : 0.14	i : 0.07	2 : 0.07	c : 0.05	f : 0.04	g : 0.04	3 : 0.01	4 : 0.01	d : 0.01	
e : 0.17	= : 0.14	c : 0.14	^ : 0.13	i : 0.10	g : 0.07	f : 0.05	2 : 0.05	d : 0.02	b : 0.02	4 : 0.01	a : 0.01	] : 0.01	
= : 0.16	e : 0.14	^ : 0.13	c : 0.13	i : 0.10	g : 0.07	2 : 0.05	] : 0.05	f : 0.04	d : 0.04	b : 0.02	h : 0.01	

#score	1521.30302205519
#seq	68
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075XTM_SDAD1_transcript_m1_run2.txt

#BEAR
iiiiii[ccceeeee[cccooooooccc333eeeee]ccc	chr19:581220-581475(+)$1	255	120	160	14.0927
::bb!!gggggggddddoooooodddd333ggggggg22b	chr7:103236891-103237164(-)$1	273	91	131	11.8399
##dddd[ccc[bb"""bbnnnnnbb22bb]cccdddd333	chr3:148927944-148928220(-)$1	276	173	213	13.3500
f[bb[bb[ggggggg[bbnnnnnbb]ggggggg4444bb]	chr20:61460726-61460947(+)$1	221	71	111	13.8667
[ccc"""ffffff!!cccooooooccc22ffffff22ccc	chr2:216285295-216285506(-)$1	211	39	79	14.7301
ooooeeeeeeeeee!!aooooooa22eeeeeggggggg[g	chr17:48797010-48797278(+)$1	268	61	101	10.6776
eeee"""ccc####ddddnnnnndddd]ccc22eeeeedd	chr3:133475579-133475847(+)$1	268	85	125	12.5380
=dddd[cccbb[ffffffnnnnnffffff22bb22ccc]d	chr4:74318115-74318351(+)$1	236	11	51	11.4646
cc!!dddd[a[bb!!ddddnnnnnddddbb]a]dddd22c	chr6:168366379-168366658(+)$1	279	115	155	10.8453
dddd[gggggggbbcccannnnna]ccc333bb]gggggg	chr2:216300426-216300643(-)$1	217	139	179	14.3341
=====a[ccc[bb!!cccnnnnnccc22bb]ccca:ffff	chr3:49722594-49722811(-)$1	217	59	99	13.5166
!bb!!dddd!!gggggggaooooooa]gggggggdddd]b	chr16:30081240-30081447(+)$1	207	18	58	12.8669
dddggggggg!!ccc!!annnnna22ccc22ggggggg:e	chr4:74318095-74318315(+)$1	220	78	118	13.3607
dddd[bb!!eeeee!!cccnnnnnccceeeee]bb22ddd	chr3:186336239-186336485(+)$1	246	123	163	12.2028
cc####ccc[eeeeeacccooooooccc]a333eeeee]c	chr11:130005415-130005675(+)$1	260	158	198	13.9885
eee!!bb[agggggggcccmmmmccc333ggggggg]a]b	chr14:23792131-23792375(+)$1	244	97	137	13.5364
"""dddd[eeeee"""bboooooobb]eeeeedddd]eee	chr2:216279462-216279698(-)$1	236	100	140	13.3061
b!!iiiiiiiii"""cccnnnnnccc333iiiiiiiiibb	chr19:6718313-6718521(-)$1	208	155	195	16.2258
dd"""hhhhhhhh!!cccnnnnnccc]hhhhhhhh333dd	chr4:74319444-74319664(+)$1	220	178	218	13.3421
eee!!bb[agggggggcccmmmmccc333ggggggg]a]b	chr14:23792109-23792331(+)$1	222	119	159	13.5364
:===========ccc[bboooooobb]ccc333=======	chr21:46908231-46908457(+)$1	226	124	164	15.8274
[ccc"""ccc[eeeeeooooooeeeee4444ccc4444cc	chr14:95080995-95081287(+)$1	292	179	219	13.3278
c!!ccc"""ccc"""cccnnnnnccccccccc]ccc]a]b	chr19:18499345-18499594(+)$1	249	133	173	15.7303
Eccc[eeeee[a[ccc[aooooooa]ccca]eeeee]ccc	chr2:75104194-75104510(+)$1	316	275	315	13.3501
ee####ccc!!ddddcccmmmmccc4444ddddccc333e	chr20:61463406-61463631(+)$1	225	156	196	12.4323
g[bb[ccc!!ccc"""bbmmmmbbccc22ccc22bb]ggg	chr19:6697254-6697456(-)$1	202	96	136	11.7710
[ccc####ccc[fffffflllffffffccc333ccc]bb]	chr2:85769631-85769952(+)$1	321	117	157	12.5332
gccc[bb[aiiiiiiiiinnnnniiiiiiiii4444a]bb	chr8:11702487-11702737(-)$1	250	135	175	14.2801
cccc####eeeee[cccmmmmccceeeee4444ccc333c	chr2:216298029-216298264(-)$1	235	25	65	11.8053
ggggggiiiiiiiii!!bbmmmmbb22iiiiiiiii4444	chr22:39151683-39151945(-)$1	262	122	162	12.7642
"""dddd[eeeee"""bboooooobb]eeeeedddd]eee	chr2:216279498-216279758(-)$1	260	160	200	13.3061
ee[==========[a!!annnnna22a]==========]e	chr19:6710629-6710868(-)$1	239	177	217	15.7607
!ccc[a!!bb!!ffffffnnnnnffffff22bb22a]ccc	chr6:43738282-43738636(+)$1	354	223	263	13.0975
!bb!!ggggggg[bb[bboooooobb]bbggggggg22bb	chr12:9229308-9229526(-)$1	218	10	50	13.8004
:ccc!!ccca[gggggggnnnnnggggggg]a]ccc]ccc	chr2:216274186-216274395(-)$1	209	157	197	14.8186
"ccc[bb!!ffffffrrrrrrrrrffffff4444bb]ccc	chr6:131276144-131276524(-)$1	380	330	370	10.6278
"""dddd!!a[ccceeeeeooooooeeeee]ccca22ddd	chr17:19093354-19093566(-)$1	212	122	162	11.8141
HHHH:cccccc!!a[cccnnnnnccc]a333ccc]ccc:e	chr6:144749892-144750128(+)$1	236	43	83	11.1616
"""ffffff!!bb"""bboooooobb]bb]ffffff333d	chr3:52830535-52830759(+)$1	224	165	205	13.5469
==$$$$$ccc!!ddddbboooooobb]dddd22ccc333=	chr21:46929941-46930159(+)$1	218	122	162	13.8302
::bb[iiiiiiiii[cccnnnnnccc]iiiiiiiii]bb:	chr12:26868131-26868419(-)$1	288	188	228	13.2174
$$ddddbb[dddd!!cccnnnnnccc22dddd22bb]ddd	chr1:19487982-19488235(-)$1	253	163	203	11.8871
ggggggg"""a[ffffffooooooffffff]agggggggh	chr16:74926285-74926556(-)$1	271	169	209	13.1434
[ccc[ffffff!!ccc[ccclllcccccc333ffffff88	chr21:46899888-46900117(+)$1	229	114	154	11.4907
ddddd!!ccc[bb!!cccmmmmcccbbccc]dddd]dddd	chr14:55034447-55034741(+)$1	294	177	217	11.1553
[dddd[ggggggg[ddddnnnnndddd333gggggggddd	chr9:116822408-116822633(-)$1	225	112	152	13.8812
ff####==========[bbmmmmbb]==========4444	chr2:216283878-216284159(-)$1	281	124	164	13.8389
[ddddccca[ffffffbbnnnnnbb]ffffff]a333ccc	chr20:61459175-61459423(+)$1	248	143	183	13.4631
e[bb"""dddd"""cccooooooccc4444dddd333bb]	chr2:216300482-216300695(-)$1	213	147	187	13.7232
ddccc!!ggggggg[cccooooooccc]ggggggg22ccc	chr2:216300495-216300709(-)$1	214	76	116	15.5563
ddd[==========ddddnnnnndddd333==========	chr9:117015063-117015310(+)$1	247	37	77	15.1268
+==========ccc!!bboooooobb]ccc]=========	chr19:6686150-6686396(-)$1	246	41	81	16.0054
ggggg[ccceeeee!!bbmmmmbb]eeeee333cccgggg	chr7:45928463-45928700(+)$1	237	96	136	11.6947
ddddd[ccc####ccc[bbmmmmbb]ccc4444cccdddd	chr3:50112604-50112863(+)$1	259	26	66	11.3579
iiiiii!!ffffff[ccclllcccffffff4444iiiiii	chr10:21823270-21823549(+)$1	279	18	58	12.5093
ffff!!eeeeeccc!!bboooooobb22ccc22eeeee]f	chr11:129979306-129979560(+)$1	254	17	57	13.0501

#otherMatches

#Seq PSSM
GUUCUUCGUGAGUUCCUCGCAGGGCCGGUCAGAGCUACAC	chr19:581220-581475(+)$1	255	120	160	14.0927
UACUUCUUGGGUGGACUUUGUCCAGUUCUACAUCCAGAUA	chr7:103236891-103237164(-)$1	273	91	131	11.8399
GGCAAUUGUGUGACUAGGAUUUACCAUUCCCACAUUGAUG	chr3:148927944-148928220(-)$1	276	173	213	13.3500
UCCUGGCAGGGCCUCCCUGGACGAGCGGGGUCCAAAGGCG	chr20:61460726-61460947(+)$1	221	71	111	13.8667
AUGAAGAGGGGCACAUGCUGAACUGUACAUGCUUCGGUCA	chr2:216285295-216285506(-)$1	211	39	79	14.7301
ACAGCCGCCCGAAGGAAGCACCAUGAUUUCGGCCGCGCAG	chr17:48797010-48797278(+)$1	268	61	101	10.6776
CCCUCCCCAGAGAACUUGGCAAACAAGGCUGACAGGGACC	chr3:133475579-133475847(+)$1	268	85	125	12.5380
AUUAUCGGACACUUAUGUAUCAGACAUGAAAUGACUCCAG	chr4:74318115-74318351(+)$1	236	11	51	11.4646
ACGAGGCGGCGCGCAGGUUGCUGGAGCCCGAGGCGCCCGG	chr6:168366379-168366658(+)$1	279	115	155	10.8453
GGGCUGCUGCUGCUGGCCGUCCAGUGCCUGGGGACAGCGG	chr2:216300426-216300643(-)$1	217	139	179	14.3341
UGCGCGUGGUUGGGGGCCAUCCGGGCAACUCACCCUGGAC	chr3:49722594-49722811(-)$1	217	59	99	13.5166
GCCGAGCCCUGCAGGCCUCUGCCCUGAAGGCCUGGGGCGG	chr16:30081240-30081447(+)$1	207	18	58	12.8669
UGGUGUUGGCCAGUGCUGCACUUCUUCAUAUGCCAACAGG	chr4:74318095-74318315(+)$1	220	78	118	13.3607
UGGCACUGACUGUGUUGCUAAAGAGGCCACAGAGGCAGCC	chr3:186336239-186336485(+)$1	246	123	163	12.2028
CCCUUCCACCCCUUCCCAGCCCUACCUGAGAACGAAGGUG	chr11:130005415-130005675(+)$1	260	158	198	13.9885
UUGAGGAGAAGAUGGAGGCUGAUGCCCGUUCCAUCUAUGU	chr14:23792131-23792375(+)$1	244	97	137	13.5364
CCAUCUCACAUUUCCAAGUACAUUCUCAGGUGGAGACCUG	chr2:216279462-216279698(-)$1	236	100	140	13.3061
CAGGCCACCUUCGGGACCCAAGUGGUGGAGAAGGUGGUGC	chr19:6718313-6718521(-)$1	208	155	195	16.2258
AGCUCAUUUCAUACUCAAAAUACUUGCUAUGGAAUUUUCU	chr4:74319444-74319664(+)$1	220	178	218	13.3421
UUGAGGAGAAGAUGGAGGCUGAUGCCCGUUCCAUCUAUGU	chr14:23792109-23792331(+)$1	222	119	159	13.5364
AAGGUCAGUGACGGAUAUGUCUGGGUUUCUGUGGUUGCUG	chr21:46908231-46908457(+)$1	226	124	164	15.8274
CUGCAGCUGAGUAUGGGAAAUGCCAUGUUUGUCAAAGAGC	chr14:95080995-95081287(+)$1	292	179	219	13.3278
GAAGACCUGGGCUGGGCCGAUUGGGUGCUGUCGCCACGGG	chr19:18499345-18499594(+)$1	249	133	173	15.7303
UCUAUUUGCUGGAUCACCACACGAGUUGACGGGUAGUUGG	chr2:75104194-75104510(+)$1	316	275	315	13.3501
GCAAAAGGAAUGAAGGCAAAGCUGCACAGCUUCUCCCAGG	chr20:61463406-61463631(+)$1	225	156	196	12.4323
GUCGUGGUGAGUGCUUGGGGCACCCACAAACCCUUGUCCU	chr19:6697254-6697456(-)$1	202	96	136	11.7710
AUGGAGGAGGUGCCUUUUCAGGAAAGGAUUAUACCAAGGU	chr2:85769631-85769952(+)$1	321	117	157	12.5332
GGCGAGAUCGGGGUAGAAAUGCAUUUUAUUCUUUAAGUUC	chr8:11702487-11702737(-)$1	250	135	175	14.2801
ACUAGAAAAGCUUGUACCUAAGUGAGGCUCACAUGGACUU	chr2:216298029-216298264(-)$1	235	25	65	11.8053
ggcggcggccuggccucggacgcccccggccgggcUAGAA	chr22:39151683-39151945(-)$1	262	122	162	12.7642
CCAUCUCACAUUUCCAAGUACAUUCUCAGGUGGAGACCUG	chr2:216279498-216279758(-)$1	260	160	200	13.3061
GACUCCGUGUGGGUGGACGUCAAGGACUCCUGCGUGGGCU	chr19:6710629-6710868(-)$1	239	177	217	15.7607
GCGGACAGUGGAcgcggcggcgagccgcgggcaggggccg	chr6:43738282-43738636(+)$1	354	223	263	13.0975
AUGCCCUGUUUUGCCUGGAGUCAGCCUGGAAGACAGCACA	chr12:9229308-9229526(-)$1	218	10	50	13.8004
AACUCUCCUUGUGGGGGUGGGUGGCCUCUAGGCAGGUGGU	chr2:216274186-216274395(-)$1	209	157	197	14.8186
GGCAUGAUGAAUAGAUUUUUGUGUUUUAUUAAGUUCCUGU	chr6:131276144-131276524(-)$1	380	330	370	10.6278
gccggcuuucuggcguugcuuggcugcaacugccgucagc	chr17:19093354-19093566(-)$1	212	122	162	11.8141
AAAGUUGUCAAAAUGUCACCAAUUGAGAGACUUGAACAUG	chr6:144749892-144750128(+)$1	236	43	83	11.1616
ACAGGGGGUCUGGCCCAGUGUGAUCUCCCUACCCCCAACU	chr3:52830535-52830759(+)$1	224	165	205	13.5469
GGCCGUGGGGCUGGCGGGCACCUUCCGCGCCUUCCUGUCC	chr21:46929941-46930159(+)$1	218	122	162	13.8302
GUAUGUAAAUGUUUUUUGGCACUUAAUAAAUAUUUAGAUC	chr12:26868131-26868419(-)$1	288	188	228	13.2174
CCUCCCUGAGCUAUAAAGGGUGGCUUGUUAGUGACACGGG	chr1:19487982-19488235(-)$1	253	163	203	11.8871
GUCCAGGUAUUGUCCAUCCCUUUUGGUGGAGAUUUGGAUU	chr16:74926285-74926556(-)$1	271	169	209	13.1434
AGAGagggcccccaggaccccaagggccuccagggccccc	chr21:46899888-46900117(+)$1	229	114	154	11.4907
CCCCCUAACCAUGAUGUUUCGCGACCAGGUCGGGGUGCUG	chr14:55034447-55034741(+)$1	294	177	217	11.1553
UGACAACUGGCCGGUCUGCAAGUCAGAGGAUGGCCAGUGU	chr9:116822408-116822633(-)$1	225	112	152	13.8812
CAGAUACCAGUGCUACUGCUAUGGCCGUGGCAUUGGGGAG	chr2:216283878-216284159(-)$1	281	124	164	13.8389
CGGAGAGCCGGUGAGUGCACGUGGCUGCUCAUGGAAUGCU	chr20:61459175-61459423(+)$1	248	143	183	13.4631
CGUCUCUCCCCCACCGUCUCAACAUGCUUAGGGGUCCGGG	chr2:216300482-216300695(-)$1	213	147	187	13.7232
CAACCCCCGGGAGGCAUUAGAAGGGAUUUUUCCCGCAGGU	chr2:216300495-216300709(-)$1	214	76	116	15.5563
GGACUGAAGGAGGAAGCUUCCAUAGCUGAUUCCUCCUUUG	chr9:117015063-117015310(+)$1	247	37	77	15.1268
GCCAUCCCCAGGCUGGACAGAGCAGUGAGCACUGGGGAUG	chr19:6686150-6686396(-)$1	246	41	81	16.0054
CUGCGUGCAGGAGUCUGACGCCUCCGCUCCCCAUGCUGCA	chr7:45928463-45928700(+)$1	237	96	136	11.6947
CAGUGAUCGUAAACUUGUUGAUAAAGAAGAUAUCGACACU	chr3:50112604-50112863(+)$1	259	26	66	11.3579
UCUCCGGGCGCCCGCGUUAGCGGCCGGGUGGAGGUGGGGA	chr10:21823270-21823549(+)$1	279	18	58	12.5093
GCUCUUGCAGCCAAUGCCGGAACAGGAUUUGCUGUUGCUG	chr11:129979306-129979560(+)$1	254	17	57	13.0501

#DB
((((((.((((((((.(((......)))...))))).)))	chr19:581220-581475(+)$1	1	120	160	14.0927
..((..(((((((((((......))))...)))))))..)	chr7:103236891-103237164(-)$1	1	91	131	11.8399
..((((.(((.((...((.....))..)).)))))))...	chr3:148927944-148928220(-)$1	1	173	213	13.3500
(.((.((.(((((((.((.....)).)))))))....)).	chr20:61460726-61460947(+)$1	1	71	111	13.8667
.(((...((((((..(((......)))..))))))..)))	chr2:216285295-216285506(-)$1	1	39	79	14.7301
....)))))(((((..(......)..)))))(((((((.(	chr17:48797010-48797278(+)$1	1	61	101	10.6776
((((...(((....((((.....)))).)))..)))))))	chr3:133475579-133475847(+)$1	1	85	125	12.5380
(((((.(((((.((((((.....))))))..))..))).)	chr4:74318115-74318351(+)$1	1	11	51	11.4646
((..((((.(.((..((((.....)))))).).))))..)	chr6:168366379-168366658(+)$1	1	115	155	10.8453
((((.(((((((((((((.....).)))...)).))))))	chr2:216300426-216300643(-)$1	1	139	179	14.3341
)))))(.(((.((..(((.....)))..)).)))).((((	chr3:49722594-49722811(-)$1	1	59	99	13.5166
.((..((((..((((((((......).))))))))))).)	chr16:30081240-30081447(+)$1	1	18	58	12.8669
)))(((((((..(((..(.....)..)))..))))))).(	chr4:74318095-74318315(+)$1	1	78	118	13.3607
((((.((..(((((..(((.....)))))))).))..)))	chr3:186336239-186336485(+)$1	1	123	163	12.2028
((....(((.(((((((((......))).)...))))).)	chr11:130005415-130005675(+)$1	1	158	198	13.9885
(((..((.(((((((((((....)))...))))))).).)	chr14:23792131-23792375(+)$1	1	97	137	13.5364
...((((.(((((...((......)).))))))))).)))	chr2:216279462-216279698(-)$1	1	100	140	13.3061
(..(((((((((...(((.....)))...)))))))))))	chr19:6718313-6718521(-)$1	1	155	195	16.2258
((...((((((((..(((.....))).))))))))...))	chr4:74319444-74319664(+)$1	1	178	218	13.3421
(((..((.(((((((((((....)))...))))))).).)	chr14:23792109-23792331(+)$1	1	119	159	13.5364
.((((((((((((((.((......)).)))...)))))))	chr21:46908231-46908457(+)$1	1	124	164	15.8274
.(((...(((.(((((......)))))....)))....))	chr14:95080995-95081287(+)$1	1	179	219	13.3278
(..(((...(((...(((.....))))))))).))).).)	chr19:18499345-18499594(+)$1	1	133	173	15.7303
)(((.(((((.(.(((.(......).)))).))))).)))	chr2:75104194-75104510(+)$1	1	275	315	13.3501
((....(((..(((((((....)))....)))))))...)	chr20:61463406-61463631(+)$1	1	156	196	12.4323
(.((.(((..(((...((....)))))..)))..)).)))	chr19:6697254-6697456(-)$1	1	96	136	11.7710
.(((....(((.((((((...)))))))))...))).)).	chr2:85769631-85769952(+)$1	1	117	157	12.5332
)(((.((.((((((((((.....)))))))))....).))	chr8:11702487-11702737(-)$1	1	135	175	14.2801
((((....(((((.(((....))))))))....)))...)	chr2:216298029-216298264(-)$1	1	25	65	11.8053
(((((((((((((((..((....))..)))))))))....	chr22:39151683-39151945(-)$1	1	122	162	12.7642
...((((.(((((...((......)).))))))))).)))	chr2:216279498-216279758(-)$1	1	160	200	13.3061
((.((((((((((.(..(.....)..).)))))))))).)	chr19:6710629-6710868(-)$1	1	177	217	15.7607
.(((.(..((..((((((.....))))))..))..).)))	chr6:43738282-43738636(+)$1	1	223	263	13.0975
.((..(((((((.((.((......)).)))))))))..))	chr12:9229308-9229526(-)$1	1	10	50	13.8004
.(((..((((.(((((((.....))))))).).))).)))	chr2:216274186-216274395(-)$1	1	157	197	14.8186
.(((.((..((((((.........))))))....)).)))	chr6:131276144-131276524(-)$1	1	330	370	10.6278
...((((..(.((((((((......))))).))))..)))	chr17:19093354-19093566(-)$1	1	122	162	11.8141
((((.((((((..(.(((.....))).)...))).))).(	chr6:144749892-144750128(+)$1	1	43	83	11.1616
...((((((..((...((......)).)).))))))...)	chr3:52830535-52830759(+)$1	1	165	205	13.5469
((.....(((..((((((......)).))))..)))...)	chr21:46929941-46930159(+)$1	1	122	162	13.8302
..((.(((((((((.(((.....))).))))))))).)).	chr12:26868131-26868419(-)$1	1	188	228	13.2174
..((((((.((((..(((.....)))..))))..)).)))	chr1:19487982-19488235(-)$1	1	163	203	11.8871
(((((((...(.((((((......)))))).)))))))))	chr16:74926285-74926556(-)$1	1	169	209	13.1434
.(((.((((((..(((.(((...))))))...))))))..	chr21:46899888-46900117(+)$1	1	114	154	11.4907
(((((..(((.((..(((....)))))))).)))).))))	chr14:55034447-55034741(+)$1	1	177	217	11.1553
.((((.(((((((.((((.....))))...))))))))))	chr9:116822408-116822633(-)$1	1	112	152	13.8812
((....((((((((((.((....)).))))))))))....	chr2:216283878-216284159(-)$1	1	124	164	13.8389
.((((((((.((((((((.....)).)))))).)...)))	chr20:61459175-61459423(+)$1	1	143	183	13.4631
(.((...((((...(((......)))....))))...)).	chr2:216300482-216300695(-)$1	1	147	187	13.7232
))(((..(((((((.(((......))).)))))))..)))	chr2:216300495-216300709(-)$1	1	76	116	15.5563
(((.((((((((((((((.....))))...))))))))))	chr9:117015063-117015310(+)$1	1	37	77	15.1268
.(((((((((((((..((......)).))).)))))))))	chr19:6686150-6686396(-)$1	1	41	81	16.0054
(((((.((((((((..((....)).)))))...)))))))	chr7:45928463-45928700(+)$1	1	96	136	11.6947
(((((.(((....(((.((....)).)))....)))))))	chr3:50112604-50112863(+)$1	1	26	66	11.3579
((((((..((((((.(((...)))))))))....))))))	chr10:21823270-21823549(+)$1	1	18	58	12.5093
((((..((((((((..((......))..)))..))))).)	chr11:129979306-129979560(+)$1	1	17	57	13.0501

#PSSM
d : 0.14	[ : 0.10	e : 0.10	" : 0.08	g : 0.08	: : 0.07	c : 0.07	f : 0.05	= : 0.05	! : 0.05	i : 0.03	# : 0.01	o : 0.01	b : 0.01	E : 0.01	H : 0.01	$ : 0.01	+ : 0.01	
c : 0.21	d : 0.19	e : 0.08	= : 0.07	" : 0.07	[ : 0.05	g : 0.05	i : 0.03	: : 0.03	b : 0.03	! : 0.03	f : 0.03	# : 0.01	o : 0.01	H : 0.01	$ : 0.01	
d : 0.19	c : 0.19	b : 0.12	" : 0.08	e : 0.05	! : 0.05	= : 0.05	# : 0.05	g : 0.05	i : 0.03	o : 0.01	[ : 0.01	H : 0.01	$ : 0.01	f : 0.01	
d : 0.21	c : 0.21	b : 0.08	! : 0.08	= : 0.07	g : 0.07	i : 0.05	# : 0.05	f : 0.03	o : 0.01	e : 0.01	" : 0.01	H : 0.01	$ : 0.01	[ : 0.01	
d : 0.19	[ : 0.17	! : 0.12	" : 0.08	= : 0.08	# : 0.08	g : 0.07	i : 0.05	c : 0.03	e : 0.01	: : 0.01	f : 0.01	$ : 0.01	
d : 0.12	b : 0.10	! : 0.08	g : 0.08	# : 0.08	i : 0.07	" : 0.07	[ : 0.07	= : 0.07	c : 0.07	e : 0.03	a : 0.03	f : 0.03	h : 0.01	$ : 0.01	
c : 0.16	b : 0.12	g : 0.10	" : 0.08	d : 0.08	= : 0.08	! : 0.07	[ : 0.05	e : 0.05	i : 0.05	# : 0.03	f : 0.03	h : 0.01	$ : 0.01	
c : 0.28	g : 0.10	[ : 0.10	! : 0.08	= : 0.08	f : 0.05	e : 0.05	d : 0.05	i : 0.05	" : 0.03	# : 0.03	h : 0.01	b : 0.01	
c : 0.26	g : 0.12	e : 0.10	= : 0.08	f : 0.07	! : 0.07	a : 0.07	i : 0.05	[ : 0.03	d : 0.03	" : 0.03	h : 0.01	b : 0.01	
c : 0.17	g : 0.16	e : 0.14	= : 0.08	f : 0.07	! : 0.07	i : 0.07	a : 0.05	b : 0.03	[ : 0.03	d : 0.03	h : 0.01	" : 0.01	# : 0.01	
e : 0.16	g : 0.14	[ : 0.14	! : 0.10	f : 0.08	= : 0.08	i : 0.07	c : 0.07	# : 0.03	d : 0.03	b : 0.01	h : 0.01	a : 0.01	
g : 0.17	e : 0.16	b : 0.08	! : 0.08	c : 0.08	f : 0.07	i : 0.07	= : 0.07	[ : 0.05	# : 0.03	d : 0.03	h : 0.01	a : 0.01	" : 0.01	
e : 0.16	g : 0.14	f : 0.14	b : 0.10	c : 0.10	" : 0.05	d : 0.05	i : 0.05	= : 0.05	# : 0.03	[ : 0.03	! : 0.03	h : 0.01	
" : 0.14	c : 0.14	f : 0.12	e : 0.10	g : 0.10	! : 0.10	d : 0.05	i : 0.05	[ : 0.05	b : 0.03	= : 0.03	# : 0.01	a : 0.01	
! : 0.19	c : 0.14	" : 0.12	d : 0.10	f : 0.10	g : 0.08	e : 0.07	[ : 0.07	i : 0.03	a : 0.01	b : 0.01	= : 0.01	
c : 0.32	! : 0.14	d : 0.10	" : 0.08	f : 0.08	[ : 0.07	g : 0.07	e : 0.03	a : 0.01	i : 0.01	r : 0.01	= : 0.01	
c : 0.35	b : 0.23	d : 0.08	f : 0.07	[ : 0.07	! : 0.05	g : 0.03	a : 0.01	o : 0.01	i : 0.01	r : 0.01	e : 0.01	
c : 0.32	b : 0.28	o : 0.07	d : 0.07	f : 0.07	a : 0.07	g : 0.03	i : 0.01	m : 0.01	r : 0.01	e : 0.01	
n : 0.35	o : 0.28	c : 0.10	m : 0.08	b : 0.05	l : 0.03	d : 0.01	a : 0.01	r : 0.01	e : 0.01	
n : 0.39	o : 0.35	m : 0.17	l : 0.03	r : 0.01	c : 0.01	
n : 0.39	o : 0.35	m : 0.17	l : 0.05	r : 0.01	
n : 0.39	o : 0.35	m : 0.16	c : 0.03	f : 0.01	r : 0.01	l : 0.01	
n : 0.39	o : 0.33	m : 0.08	c : 0.07	b : 0.03	e : 0.01	f : 0.01	r : 0.01	l : 0.01	
o : 0.28	c : 0.26	b : 0.14	d : 0.07	a : 0.07	f : 0.05	n : 0.03	e : 0.01	i : 0.01	g : 0.01	r : 0.01	
c : 0.30	b : 0.24	f : 0.10	d : 0.08	o : 0.07	2 : 0.05	] : 0.03	e : 0.03	a : 0.01	i : 0.01	g : 0.01	
c : 0.32	b : 0.16	f : 0.10	d : 0.08	2 : 0.08	] : 0.08	e : 0.07	a : 0.01	4 : 0.01	i : 0.01	g : 0.01	
c : 0.21	] : 0.19	f : 0.12	d : 0.08	2 : 0.08	e : 0.08	3 : 0.05	g : 0.03	4 : 0.03	i : 0.01	a : 0.01	b : 0.01	= : 0.01	
c : 0.21	e : 0.12	3 : 0.10	f : 0.10	2 : 0.08	b : 0.05	g : 0.05	] : 0.05	4 : 0.05	i : 0.05	d : 0.03	h : 0.01	a : 0.01	= : 0.01	
c : 0.19	3 : 0.16	e : 0.12	f : 0.10	b : 0.08	g : 0.07	4 : 0.05	i : 0.05	2 : 0.03	= : 0.03	d : 0.03	] : 0.01	h : 0.01	
c : 0.14	3 : 0.12	g : 0.12	e : 0.10	f : 0.08	i : 0.07	4 : 0.07	2 : 0.05	d : 0.05	] : 0.03	b : 0.03	a : 0.03	= : 0.03	h : 0.01	
3 : 0.14	g : 0.14	] : 0.14	c : 0.08	4 : 0.08	e : 0.07	i : 0.07	d : 0.07	f : 0.05	2 : 0.05	= : 0.05	h : 0.01	
g : 0.17	c : 0.12	e : 0.08	3 : 0.08	i : 0.07	d : 0.07	4 : 0.07	= : 0.07	f : 0.05	2 : 0.05	b : 0.05	a : 0.05	h : 0.01	
g : 0.19	c : 0.08	2 : 0.08	] : 0.08	d : 0.08	4 : 0.08	3 : 0.07	= : 0.07	f : 0.05	b : 0.05	i : 0.05	e : 0.03	h : 0.01	
c : 0.21	g : 0.17	d : 0.10	e : 0.08	= : 0.08	4 : 0.07	2 : 0.07	f : 0.05	i : 0.05	] : 0.01	b : 0.01	h : 0.01	a : 0.01	
g : 0.17	c : 0.14	d : 0.10	e : 0.08	= : 0.08	b : 0.07	i : 0.07	4 : 0.05	f : 0.05	2 : 0.03	a : 0.03	3 : 0.03	h : 0.01	] : 0.01	
c : 0.17	g : 0.16	e : 0.08	d : 0.08	= : 0.08	2 : 0.07	i : 0.07	4 : 0.05	3 : 0.05	b : 0.05	f : 0.03	: : 0.01	a : 0.01	] : 0.01	
] : 0.24	g : 0.12	3 : 0.12	d : 0.08	2 : 0.08	4 : 0.07	= : 0.07	e : 0.05	c : 0.03	f : 0.03	i : 0.03	a : 0.01	
c : 0.17	d : 0.12	3 : 0.10	g : 0.10	e : 0.08	b : 0.07	= : 0.07	2 : 0.05	a : 0.05	4 : 0.05	f : 0.03	i : 0.03	] : 0.01	
c : 0.16	d : 0.14	] : 0.14	b : 0.12	3 : 0.08	g : 0.07	= : 0.05	2 : 0.03	: : 0.03	e : 0.03	4 : 0.03	[ : 0.01	f : 0.01	8 : 0.01	i : 0.01	
c : 0.21	d : 0.17	b : 0.14	e : 0.10	g : 0.07	= : 0.07	] : 0.05	f : 0.03	4 : 0.03	3 : 0.01	: : 0.01	h : 0.01	8 : 0.01	i : 0.01	

#score	740.3104896734034
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF119DHE_SMNDC1_UTR_m1_run1.txt

#BEAR
b"""ccc####ccc"""cccmmmmccc333ccc4444ccc	chr12:54801544-54801836(-)$1	292	183	223	18.8426
bb[ccc[iiiiiiiii!!ccclllccc22iiiiiiiii]c	chr7:5569500-5569751(-)$1	251	206	246	14.3698
gg!!ccc"""dddd[ddddoooooodddd]dddd]cccgg	chr8:23425710-23425988(+)$1	278	5	45	14.5586
hhh[ccc####ccc[bboooooobbccc22ccc]hhhhhh	chr1:155279415-155279704(+)$1	289	246	286	11.7218
hhhdddd[a!!dddd!!bboooooobb22dddd22adddd	chr3:9862067-9862357(+)$1	290	230	270	13.0553
cc[eeeee!!a####cccooooooccc333a22eeeeecc	chr7:150774527-150774793(-)$1	266	146	186	14.4152
c!!dddd"""dddd####ccclllccc333dddd]dddd2	chr16:89006122-89006418(-)$1	296	194	234	16.2852
::ffffff"""dddd!!cccmmmmccc333dddd333fff	chr1:38274068-38274347(+)$1	279	14	54	15.3496
fffff[a[cccccc[ccc[ammmmaccc]ccc]cccafff	chr19:798364-798622(+)$1	258	184	224	14.4370
ffffffbb####dddd!!bbmmmmbb22dddd4444bb33	chr21:38459403-38459662(+)$1	259	81	121	12.8070
!!dddd"""dddda[a[ddddmmmmdddd]a]a]dddd44	chr22:22313474-22313737(-)$1	263	107	147	12.7702
!ccc[a$$$$$eeeee"""aooooooa333eeeeea]ccc	chr17:42457867-42458185(-)$1	318	95	135	13.2343
####dddd[bb[ccc!!ddddllldddd22cccbbdddd4	chr4:10117690-10118007(-)$1	317	5	45	12.2761
gggggeeeee[a[ddddcccmmmmccc]dddda]eeeeeC	chr19:40742173-40742451(-)$1	278	231	271	12.4970
!!dddd"""dddda[a[ddddmmmmdddd]a]a]dddd44	chr22:22313537-22313757(-)$1	220	127	167	12.7702
iii[ccc[a[dddd####cccnnnnnccc]dddd]a]ccc	chr19:2425549-2425790(-)$1	241	69	109	13.8447
ccc[eeeee!!a!!bb!!bbmmmmbb22bb22a]eeeeec	chr22:50013911-50014157(-)$1	246	131	171	11.6315
cc!!ccc[ccc[ccc"""bblllbb333ccc]cccccc22	chr1:182360561-182360832(-)$1	271	6	46	13.5667
$$$$dddd[dddd"""ddddmmmmdddd4444dddd]ddd	chr3:15091311-15091602(-)$1	291	53	93	12.8308
fff[eeeee[ccc"""ddddllldddd333ccc]eeeee]	chr17:80223533-80223781(-)$1	248	83	123	13.9031
[eeeeedddd"""ccc[cccmmmmccc333ccc55555dd	chr19:10270332-10270589(-)$1	257	105	145	11.6932
####eeeeea[dddd[ddddllldddddddd]a]eeeee3	chr16:4664263-4664499(-)$1	236	165	205	12.1718
=========[bbccc[bb[ammmma]bb]ccc]bb22===	chr12:132402740-132403005(+)$1	265	64	104	12.7510
[ggggggg"""dddd[cccnnnnnccc22dddd333gggg	chr1:52251325-52251615(+)$1	290	148	188	15.4673
!!dddd!!dddd[bb!!cccmmmmcccbb]dddd4444dd	chr10:70516927-70517177(+)$1	250	136	176	13.9343
cc!!ccc[ccceeeee[cccmmmmccc]eeeee]ccc]cc	chr19:54677972-54678269(-)$1	297	228	268	14.4162
b!!bb"""ccc[dddd[ddddllldddd]dddd]cccbb]	chr12:125398881-125399141(-)$1	260	113	153	12.4598
cc!!ffffff!!bb"""cccmmmmccc333bb22ffffff	chr5:56541981-56542263(+)$1	282	143	183	15.1649
ggg[dddd[ccc[ccc[bbmmmmbbccc22ccc22ddddg	chr16:28847476-28847741(+)$1	265	184	224	12.5396
iiiiiii[a[bb####ddddnnnnndddd333bb]aiiii	chr16:89627202-89627420(+)$1	218	150	190	12.2948
b!!eeeee$$$$$ccc[cccmmmmccc]ccc333eeeeeb	chr20:62331466-62331709(-)$1	243	140	180	14.1932
""dddd!!dddd[ccc[cccmmmmccccccdddd22dddd	chr16:28969882-28970183(+)$1	301	105	145	13.9755
ff[bb[ccc!!iiiiiiiiillliiiiiiiii22cccbbf	chr19:49606050-49606305(+)$1	255	123	163	11.7412
!!ddddccc"""ccc[a!!ammmma22a]ccc22ccc333	chr8:30669816-30670086(-)$1	270	35	75	14.5311
fff!!ccc[dddd[bb[cccmmmmccc333bb]dddd]cc	chr19:49606310-49606563(+)$1	253	114	154	14.6878
g"""ggggggg[bb####ccclllccc333bb]ggggggg	chr1:161130277-161130545(+)$1	268	137	177	15.1565
D===========ccccccooooooccc4444ccc]=====	chr8:144674989-144675259(-)$1	270	52	92	14.0693
cc[ggggggg!!bb!!cccnnnnnccc22bb]ggggggg]	chr16:448829-449109(+)$1	280	69	109	13.1722
fffff[a[cccccc[ccc[ammmmaccc]ccc]cccafff	chr19:798422-798686(+)$1	264	126	166	14.4370
======[bb[a[bb[a[cccoooooocccabba]bb]===	chr1:182360241-182360494(-)$1	253	29	69	13.2346
ff"""ccceeeee!!eeeeemmmmeeeeeeeeee]cccff	chr4:83345926-83346204(-)$1	278	192	232	10.8245
iiiiiii"""bb[ccc[cccmmmmccccccbb]iiiiiii	chr22:50696135-50696392(-)$1	257	90	130	15.1338
iiiiiiccc!!dddd[ddddmmmmdddd]dddd333ccc]	chr16:277213-277493(-)$1	280	57	97	15.3925
gggggggggg"""ddddcccmmmmccc]dddd]ggggggg	chr19:1942346-1942639(+)$1	293	215	255	14.5319
GGccc[ccc!!dddd[cccooooooccc]dddd22ccc]c	chr20:32246208-32246522(-)$1	314	47	87	13.9385
ffffff####dddd!!ddddnnnnndddd]dddd4444ff	chr9:139730331-139730580(+)$1	249	145	185	12.9842
hhhffffff[ccc[ccc[bbmmmmbb]cccccc333ffff	chr7:99950468-99950749(+)$1	281	172	212	12.3201
[ggggggg"""ddddxxxxxxxxxxxxxxxdddd333ggg	chr11:95521566-95521861(-)$1	295	43	83	12.0541
eee[ccc[cccddddeeeeemmmmeeeee22dddd22ccc	chr15:91445995-91446248(+)$1	253	77	117	11.5129
bb[ccc[iiiiiiiii!!ccclllccc22iiiiiiiii]c	chr7:5569442-5569700(-)$1	258	155	195	14.3698
c[ffffff!!ccc####cccoooooocccccc]ffffffc	chr19:15512258-15512572(-)$1	314	105	145	13.9251
fffff!!cccdddd"""cccmmmmcccdddd]ccc333ff	chr16:1361830-1362077(+)$1	247	139	179	15.1196
cccccc[bb!!ccc"""cccmmmmccc4444cccbb]ccc	chr19:1883581-1883827(-)$1	246	75	115	16.1109

#otherMatches

#Seq PSSM
UGUGGCUGUUGGUGAAUUCAGUGGUGAUGACACAGAAGGU	chr12:54801544-54801836(-)$1	292	183	223	18.8426
CUGUUUGAACCGGGCGGAGGCGGGGCUGGCGCCCGGUUGG	chr7:5569500-5569751(-)$1	251	206	246	14.3698
CUGGUAGUACAUUUUGCUUCUUAGAAAGCUAAGUCCUGGG	chr8:23425710-23425988(+)$1	278	5	45	14.5586
GGUUCCCUACGGCGGCCCUCCCUGGUGCACGGGUACCCAG	chr1:155279415-155279704(+)$1	289	246	286	11.7218
CUGUGUGCGUGCGAGGAGUACCUUAGCAACUUGGCCCACA	chr3:9862067-9862357(+)$1	290	230	270	13.0553
CCAGAGGGACCAUGAAGCGCCAAAGCUAAGGAGCUCUCGG	chr7:150774527-150774793(-)$1	266	146	186	14.4152
CGACCCUCACCUGCCCCUGGCAUCGCUUUCGCGGCAGGGG	chr16:89006122-89006418(-)$1	296	194	234	16.2852
UGGGGCCCGGGCUCAGACUGGUCACGGGGGUGAGAGGGGG	chr1:38274068-38274347(+)$1	279	14	54	15.3496
GGUCCUGCAGACGGCGAGACGAGGGCUCCCCGCUCUCGGA	chr19:798364-798622(+)$1	258	184	224	14.4370
AAACUUUCUUCUGUUAUCUCAAAUGAUUUAAUUACUGACU	chr21:38459403-38459662(+)$1	259	81	121	12.8070
GACUCCUGCACUCUGCUUGCCCGCAGGCAUGGAUGAGUUG	chr22:22313474-22313737(-)$1	263	107	147	12.7702
UGGGGAACCCCUGGGAAGAUGAGAUGAGGAUCCCAUGCCC	chr17:42457867-42458185(-)$1	318	95	135	13.2343
CCUGGCGCUCGUGGAAAGUGGAGGCCGCCCUCCCGGCGCA	chr4:10117690-10118007(-)$1	317	5	45	12.2761
AGUGACGGGGCCACCAUGAAAACCUUCUGUGGGACCCCGG	chr19:40742173-40742451(-)$1	278	231	271	12.4970
GACUCCUGCACUCUGCUUGCCCGCAGGCAUGGAUGAGUUG	chr22:22313537-22313757(-)$1	220	127	167	12.7702
GCAGCCUCUGCCUGCUCUGCCGCCGAGGCCCGGGGAUGGG	chr19:2425549-2425790(-)$1	241	69	109	13.8447
ggcucacuugggaggugacaagcuugggacagcagggugg	chr22:50013911-50014157(-)$1	246	131	171	11.6315
GCUCGGCGACCAGGUAAGCCCCCGGACGGCCCGGUGUCAC	chr1:182360561-182360832(-)$1	271	6	46	13.5667
UUAGAGAAAAUGUGAGGAUUUUAUAAUUGAUAACAUGUUC	chr3:15091311-15091602(-)$1	291	53	93	12.8308
UGUUGUGGUUUUCUUUCUUUGCCAAGGUACGGACAUUGCU	chr17:80223533-80223781(-)$1	248	83	123	13.9031
CUGUCCCUUGUCCCACUGCUCACCAGCCCCGUGUCCUUCA	chr19:10270332-10270589(-)$1	257	105	145	11.6932
AGGACGCCCCAGGCCUCGGCAGAGCUGGGCCGGAGGGCGG	chr16:4664263-4664499(-)$1	236	165	205	12.1718
CGCAGCCCUUGGCCUGAGGUGGGGAGCUGGGGACUUGGGG	chr12:132402740-132403005(+)$1	265	64	104	12.7510
GUUCAGUUCUCCAAAUGACAAGAAGUCUUUUUGCUCAAUU	chr1:52251325-52251615(+)$1	290	148	188	15.4673
AGGAUGAUGGUGAAGCUAAAGAAAUUUCUACACCUACCCA	chr10:70516927-70517177(+)$1	250	136	176	13.9343
CCUGGCUGCCGAGGGCCGGCUGGAGUCAGCCCUGCGGGGG	chr19:54677972-54678269(-)$1	297	228	268	14.4162
CGAGCAAGGUUGCCCUGAACUGGGGGUUGGGGGGAGCGCA	chr12:125398881-125399141(-)$1	260	113	153	12.4598
AGAAUAUCCUCCGAAUCCUAAAUCUAGAGCUCCAAGGAUG	chr5:56541981-56542263(+)$1	282	143	183	15.1649
AGAAGCCACAGUCGCCGCCGCCAGGGGCUUGCUCCUGGCU	chr16:28847476-28847741(+)$1	265	184	224	12.5396
GGGCCGUAGGCAGCCAUGGCGCCCAGCCGGAAUGGCAUGG	chr16:89627202-89627420(+)$1	218	150	190	12.2948
GCAGCCUUUCCACAGGGCGCAGCGGCGGCCUUUCGAGGCC	chr20:62331466-62331709(-)$1	243	140	180	14.1932
AUGGAUUUCAAGGCAGGAAGACCUCUUUUGCUUGUUGUCC	chr16:28969882-28970183(+)$1	301	105	145	13.9755
GACUCUGAACCCGAGCGGGGUUCCUUCGCUUGACUUUGAU	chr19:49606050-49606305(+)$1	255	123	163	11.7412
gacggcggcggagggagaggggagcggcgcccgggccggg	chr8:30669816-30670086(-)$1	270	35	75	14.5311
GGAUUGGUGAGGGCGGACAGGUUUCUGAGGCCUCCCUAGC	chr19:49606310-49606563(+)$1	253	114	154	14.6878
GCCUGUGGUGUCCACAAUGCCCCAGGCCUCUGAGCACCGC	chr1:161130277-161130545(+)$1	268	137	177	15.1565
GCUUAUCUUGUCUCAGGCUACCUUGCUCAGGUGACGACAG	chr8:144674989-144675259(-)$1	270	52	92	14.0693
CUGGUGACCCCUGGGCUCUGGCUGGGAAACCCGGGUCGUG	chr16:448829-449109(+)$1	280	69	109	13.1722
GGUCCUGCAGACGGCGAGACGAGGGCUCCCCGCUCUCGGA	chr19:798422-798686(+)$1	264	126	166	14.4370
UGCGCUGUGGAUGGAGUGGCGGUGCGGUCCCCUGUGGAGC	chr1:182360241-182360494(-)$1	253	29	69	13.2346
UUGCAGGACGACAUUGAAGAUUGGUCUUCUGUUGAUCUAA	chr4:83345926-83346204(-)$1	278	192	232	10.8245
GUGGGGGAGAAGCGGUAGGGAGGACCCACCCUGCCCCUGC	chr22:50696135-50696392(-)$1	257	90	130	15.1338
AAUGAUAGUCUGCAAAUCAUCCAGGUGAAUUGUUAUACUA	chr16:277213-277493(-)$1	280	57	97	15.3925
CUGGCUCCCGGAGGCCCUGGUAGCUCGUGGGUGUGGGAGC	chr19:1942346-1942639(+)$1	293	215	255	14.5319
AGGGGUGCUGGGGCUGGCCAUCCUGGGUGGGUCAGGGUUC	chr20:32246208-32246522(-)$1	314	47	87	13.9385
CACAGUCACCCCUGGCGUGGACUCCUCAUACAGGUCAUGC	chr9:139730331-139730580(+)$1	249	145	185	12.9842
CUGCCCCCAUUCUGCGGGCAGACCUGGCCGGGAUCUUGGG	chr7:99950468-99950749(+)$1	281	172	212	12.3201
CUUUCACUAGGUUGGGUAAACAGUUUUCUACCAGAAAAGU	chr11:95521566-95521861(-)$1	295	43	83	12.0541
AGGGGGCUACGGGUGGGCGGGCGCCCGCCUUCGCCUGCGU	chr15:91445995-91446248(+)$1	253	77	117	11.5129
CUGUUUGAACCGGGCGGAGGCGGGGCUGGCGCCCGGUUGG	chr7:5569442-5569700(-)$1	258	155	195	14.3698
GAGGUGAGGGAUCCUGAGGGGCUCCACCUGAUGCUCACCC	chr19:15512258-15512572(-)$1	314	105	145	13.9251
CGGAGACAGCCUUGAAACCGUGGUUGGCGGGCGCUCCACU	chr16:1361830-1362077(+)$1	247	139	179	15.1196
ugaucagcaaggagggaggcuguugcuguggcucugguga	chr19:1883581-1883827(-)$1	246	75	115	16.1109

#DB
(...(((....(((...(((....)))...)))....)))	chr12:54801544-54801836(-)$1	1	183	223	18.8426
((.(((.(((((((((..(((...)))..))))))))).)	chr7:5569500-5569751(-)$1	1	206	246	14.3698
((..(((...((((.((((......)))).)))).)))))	chr8:23425710-23425988(+)$1	1	5	45	14.5586
(((.(((....(((.((......)))))..))).))))))	chr1:155279415-155279704(+)$1	1	246	286	11.7218
)))((((.(..((((..((......))..))))..)))))	chr3:9862067-9862357(+)$1	1	230	270	13.0553
((.(((((..(....(((......)))...)..)))))))	chr7:150774527-150774793(-)$1	1	146	186	14.4152
(..((((...((((....(((...)))...)))).)))).	chr16:89006122-89006418(-)$1	1	194	234	16.2852
..((((((...((((..(((....)))...))))...)))	chr1:38274068-38274347(+)$1	1	14	54	15.3496
(((((.(.((((((.(((.(....)))).))).)))))))	chr19:798364-798622(+)$1	1	184	224	14.4370
((((((((....((((..((....))..))))....))..	chr21:38459403-38459662(+)$1	1	81	121	12.8070
..((((...(((((.(.((((....)))).).).))))..	chr22:22313474-22313737(-)$1	1	107	147	12.7702
.(((.(.....(((((...(......)...)))))).)))	chr17:42457867-42458185(-)$1	1	95	135	13.2343
....((((.((.(((..((((...))))..))))))))).	chr4:10117690-10118007(-)$1	1	5	45	12.2761
)))))(((((.(.(((((((....))).))))).))))))	chr19:40742173-40742451(-)$1	1	231	271	12.4970
..((((...(((((.(.((((....)))).).).))))..	chr22:22313537-22313757(-)$1	1	127	167	12.7702
(((.(((.(.((((....(((.....))).)))).).)))	chr19:2425549-2425790(-)$1	1	69	109	13.8447
(((.(((((..(..((..((....))..))..).))))))	chr22:50013911-50014157(-)$1	1	131	171	11.6315
((..(((.(((.(((...((...))...))).))))))..	chr1:182360561-182360832(-)$1	1	6	46	13.5667
....((((.((((...((((....))))....)))).)))	chr3:15091311-15091602(-)$1	1	53	93	12.8308
(((.(((((.(((...((((...))))...))).))))).	chr17:80223533-80223781(-)$1	1	83	123	13.9031
.(((((((((...(((.(((....)))...))).....))	chr19:10270332-10270589(-)$1	1	105	145	11.6932
....((((((.((((.((((...)))))))).).))))).	chr16:4664263-4664499(-)$1	1	165	205	12.1718
(((((((((.(((((.((.(....).)).))).))..)))	chr12:132402740-132403005(+)$1	1	64	104	12.7510
.(((((((...((((.(((.....)))..))))...))))	chr1:52251325-52251615(+)$1	1	148	188	15.4673
..((((..((((.((..(((....))))).))))....))	chr10:70516927-70517177(+)$1	1	136	176	13.9343
((..(((.((((((((.(((....))).))))).))).))	chr19:54677972-54678269(-)$1	1	228	268	14.4162
(..((...(((.((((.((((...)))).)))).))))).	chr12:125398881-125399141(-)$1	1	113	153	12.4598
((..((((((..((...(((....)))...))..))))))	chr5:56541981-56542263(+)$1	1	143	183	15.1649
(((.((((.(((.(((.((....)))))..)))..)))))	chr16:28847476-28847741(+)$1	1	184	224	12.5396
(((((((.(.((....((((.....))))...)).)))))	chr16:89627202-89627420(+)$1	1	150	190	12.2948
(..(((((.....(((.(((....))).)))...))))))	chr20:62331466-62331709(-)$1	1	140	180	14.1932
..((((..((((.(((.(((....))))))))))..))))	chr16:28969882-28970183(+)$1	1	105	145	13.9755
((.((.(((..(((((((((...)))))))))..))))))	chr19:49606050-49606305(+)$1	1	123	163	11.7412
..(((((((...(((.(..(....)..).)))..)))...	chr8:30669816-30670086(-)$1	1	35	75	14.5311
(((..(((.((((.((.(((....)))...)).)))).))	chr19:49606310-49606563(+)$1	1	114	154	14.6878
(...(((((((.((....(((...)))...)).)))))))	chr1:161130277-161130545(+)$1	1	137	177	15.1565
((((((((((((((((((......)))....))).)))))	chr8:144674989-144675259(-)$1	1	52	92	14.0693
((.(((((((..((..(((.....)))..)).))))))).	chr16:448829-449109(+)$1	1	69	109	13.1722
(((((.(.((((((.(((.(....)))).))).)))))))	chr19:798422-798686(+)$1	1	126	166	14.4370
((((((.((.(.((.(.(((......))))))).)).)))	chr1:182360241-182360494(-)$1	1	29	69	13.2346
((...((((((((..(((((....)))))))))).)))))	chr4:83345926-83346204(-)$1	1	192	232	10.8245
(((((((...((.(((.(((....)))))))).)))))))	chr22:50696135-50696392(-)$1	1	90	130	15.1338
(((((((((..((((.((((....)))).))))...))).	chr16:277213-277493(-)$1	1	57	97	15.3925
((((((((((...(((((((....))).)))).)))))))	chr19:1942346-1942639(+)$1	1	215	255	14.5319
(((((.(((..((((.(((......))).))))..))).)	chr20:32246208-32246522(-)$1	1	47	87	13.9385
((((((....((((..((((.....)))).))))....))	chr9:139730331-139730580(+)$1	1	145	185	12.9842
(((((((((.(((.(((.((....)).))))))...))))	chr7:99950468-99950749(+)$1	1	172	212	12.3201
.(((((((...((((...............))))...)))	chr11:95521566-95521861(-)$1	1	43	83	12.0541
(((.(((.((((((((((((....)))))..))))..)))	chr15:91445995-91446248(+)$1	1	77	117	11.5129
((.(((.(((((((((..(((...)))..))))))))).)	chr7:5569442-5569700(-)$1	1	155	195	14.3698
(.((((((..(((....(((......)))))).)))))))	chr19:15512258-15512572(-)$1	1	105	145	13.9251
(((((..(((((((...(((....))))))).)))...))	chr16:1361830-1362077(+)$1	1	139	179	15.1196
)))(((.((..(((...(((....)))....))))).)))	chr19:1883581-1883827(-)$1	1	75	115	16.1109

#PSSM
c : 0.16	f : 0.16	b : 0.09	g : 0.09	! : 0.09	i : 0.07	h : 0.05	[ : 0.05	# : 0.03	= : 0.03	: : 0.01	$ : 0.01	" : 0.01	D : 0.01	G : 0.01	e : 0.01	
f : 0.16	c : 0.15	! : 0.13	g : 0.11	i : 0.07	" : 0.05	h : 0.05	= : 0.05	b : 0.03	# : 0.03	e : 0.03	: : 0.01	$ : 0.01	G : 0.01	[ : 0.01	
f : 0.16	! : 0.13	[ : 0.09	d : 0.09	g : 0.09	c : 0.07	i : 0.07	" : 0.05	h : 0.05	= : 0.05	# : 0.03	e : 0.03	$ : 0.01	
f : 0.15	d : 0.13	[ : 0.11	c : 0.09	! : 0.09	g : 0.09	" : 0.05	e : 0.05	= : 0.05	i : 0.05	# : 0.03	b : 0.03	$ : 0.01	
c : 0.20	d : 0.18	f : 0.16	e : 0.11	g : 0.11	= : 0.05	i : 0.05	b : 0.03	[ : 0.01	! : 0.01	" : 0.01	
c : 0.22	d : 0.18	e : 0.13	f : 0.11	g : 0.09	[ : 0.07	= : 0.05	i : 0.05	a : 0.01	" : 0.01	! : 0.01	
c : 0.24	d : 0.11	e : 0.11	g : 0.09	[ : 0.07	f : 0.07	" : 0.05	! : 0.05	a : 0.03	= : 0.03	i : 0.03	b : 0.01	$ : 0.01	# : 0.01	
[ : 0.15	c : 0.13	" : 0.11	e : 0.11	g : 0.09	f : 0.07	d : 0.07	# : 0.05	b : 0.05	i : 0.03	= : 0.03	! : 0.03	$ : 0.01	
c : 0.20	" : 0.15	e : 0.09	# : 0.07	[ : 0.07	a : 0.05	d : 0.05	g : 0.05	i : 0.03	! : 0.03	$ : 0.03	= : 0.03	f : 0.03	b : 0.03	
! : 0.15	c : 0.15	" : 0.13	d : 0.13	[ : 0.11	# : 0.07	g : 0.05	i : 0.03	$ : 0.03	e : 0.03	b : 0.01	a : 0.01	f : 0.01	= : 0.01	
d : 0.20	c : 0.18	! : 0.15	" : 0.11	b : 0.07	# : 0.05	i : 0.03	a : 0.03	$ : 0.03	[ : 0.03	g : 0.01	= : 0.01	e : 0.01	
d : 0.35	c : 0.16	[ : 0.09	i : 0.05	e : 0.05	" : 0.05	b : 0.05	# : 0.03	a : 0.03	! : 0.03	$ : 0.01	= : 0.01	
d : 0.35	c : 0.24	[ : 0.09	b : 0.07	i : 0.05	e : 0.05	# : 0.03	" : 0.03	! : 0.01	$ : 0.01	
d : 0.32	c : 0.28	b : 0.09	i : 0.05	# : 0.05	a : 0.03	e : 0.03	! : 0.03	" : 0.03	[ : 0.03	
d : 0.22	c : 0.20	[ : 0.13	" : 0.11	# : 0.11	i : 0.05	b : 0.05	! : 0.05	e : 0.03	
c : 0.18	" : 0.13	! : 0.11	[ : 0.11	d : 0.09	# : 0.09	e : 0.07	i : 0.05	b : 0.05	a : 0.05	x : 0.01	
[ : 0.20	d : 0.16	! : 0.15	c : 0.15	" : 0.11	# : 0.07	b : 0.03	e : 0.03	i : 0.01	a : 0.01	x : 0.01	
c : 0.43	d : 0.20	! : 0.09	b : 0.05	# : 0.05	" : 0.03	e : 0.03	o : 0.01	i : 0.01	[ : 0.01	x : 0.01	
c : 0.45	d : 0.20	b : 0.11	o : 0.05	[ : 0.05	e : 0.03	" : 0.01	i : 0.01	! : 0.01	x : 0.01	
c : 0.39	d : 0.18	o : 0.11	a : 0.09	b : 0.07	n : 0.03	e : 0.03	m : 0.01	i : 0.01	x : 0.01	
m : 0.49	o : 0.16	c : 0.09	d : 0.07	l : 0.07	n : 0.07	x : 0.01	
m : 0.52	l : 0.18	o : 0.16	n : 0.09	x : 0.01	
m : 0.52	l : 0.18	o : 0.16	n : 0.09	x : 0.01	
m : 0.50	o : 0.15	l : 0.11	n : 0.09	b : 0.05	d : 0.03	i : 0.01	x : 0.01	
c : 0.41	o : 0.11	b : 0.11	d : 0.11	a : 0.07	n : 0.05	m : 0.03	e : 0.03	i : 0.01	x : 0.01	
c : 0.50	d : 0.20	b : 0.07	o : 0.05	e : 0.03	n : 0.01	3 : 0.01	] : 0.01	i : 0.01	2 : 0.01	x : 0.01	
c : 0.56	d : 0.20	2 : 0.05	b : 0.03	e : 0.03	a : 0.01	3 : 0.01	i : 0.01	] : 0.01	x : 0.01	
3 : 0.20	d : 0.20	c : 0.20	2 : 0.13	] : 0.07	b : 0.03	4 : 0.03	e : 0.03	i : 0.01	a : 0.01	x : 0.01	
3 : 0.18	d : 0.18	2 : 0.15	c : 0.15	] : 0.13	4 : 0.05	e : 0.05	b : 0.03	i : 0.01	x : 0.01	
3 : 0.20	d : 0.18	c : 0.18	] : 0.11	2 : 0.07	i : 0.05	4 : 0.05	b : 0.03	e : 0.03	a : 0.01	x : 0.01	
d : 0.33	c : 0.26	b : 0.11	i : 0.05	a : 0.05	e : 0.05	4 : 0.05	2 : 0.03	3 : 0.01	
d : 0.32	c : 0.26	] : 0.11	b : 0.09	i : 0.05	e : 0.05	2 : 0.03	3 : 0.03	4 : 0.01	
d : 0.28	c : 0.20	] : 0.15	a : 0.11	2 : 0.07	e : 0.05	i : 0.03	4 : 0.01	b : 0.01	3 : 0.01	g : 0.01	
d : 0.20	] : 0.18	2 : 0.11	c : 0.11	3 : 0.07	i : 0.05	e : 0.05	b : 0.05	g : 0.05	4 : 0.03	5 : 0.01	f : 0.01	
c : 0.15	e : 0.13	] : 0.11	3 : 0.09	d : 0.09	4 : 0.07	2 : 0.07	b : 0.07	i : 0.05	g : 0.05	f : 0.03	h : 0.01	5 : 0.01	
c : 0.18	d : 0.13	e : 0.11	3 : 0.11	4 : 0.07	a : 0.07	i : 0.05	2 : 0.05	g : 0.05	f : 0.03	b : 0.03	h : 0.01	5 : 0.01	= : 0.01	
c : 0.16	d : 0.15	e : 0.11	] : 0.09	i : 0.07	g : 0.07	4 : 0.05	3 : 0.05	f : 0.05	a : 0.03	2 : 0.03	h : 0.01	b : 0.01	5 : 0.01	= : 0.01	
c : 0.18	d : 0.15	e : 0.11	f : 0.11	g : 0.09	i : 0.07	b : 0.05	= : 0.05	4 : 0.03	] : 0.03	3 : 0.03	h : 0.01	5 : 0.01	
c : 0.16	f : 0.16	d : 0.15	g : 0.11	e : 0.09	] : 0.05	= : 0.05	3 : 0.03	4 : 0.03	b : 0.03	i : 0.03	h : 0.01	2 : 0.01	
c : 0.24	f : 0.16	g : 0.11	d : 0.09	] : 0.07	3 : 0.05	4 : 0.05	= : 0.05	2 : 0.03	i : 0.03	h : 0.01	C : 0.01	b : 0.01	

#score	725.4785177160528
#seq	53
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF956PEQ_PABPC4_CDS_m3_run2.txt

#BEAR
"""cccqqqqqqqqcccd	chr19:36142034-36142264(+)$1	230	183	201	14.1669
!!ddddqqqqqqqqdddd	chr8:30537043-30537287(-)$1	244	69	87	13.0079
dd[cccqqqqqqqqccc]	chr19:54710214-54710431(+)$1	217	85	103	14.2739
ddd[bbqqqqqqqqbb]d	chr12:6647213-6647418(+)$1	205	112	130	13.7107
[eeeeeqqqqqqqqeeee	chr1:24021133-24021352(+)$1	219	171	189	13.5607
[eeeeeqqqqqqqqeeee	chr8:145133559-145133839(+)$1	280	7	25	13.5607
ee[cccqqqqqqqqccce	chr6:43193382-43193621(-)$1	239	21	39	14.2704
:eeeeeqqqqqqqqeeee	chr19:5691470-5691699(+)$1	229	4	22	12.5713
%eeeeeqqqqqqqqeeee	chr8:146017059-146017275(-)$1	216	185	203	12.8738
dddcccqqqqqqqqccc]	chr5:158630344-158630583(-)$1	239	177	195	14.0887
ggggggqqqqqqqqgggg	chr11:5269477-5269692(-)$1	215	123	141	13.9857
bb!!bbqqqqqqqqbb]b	chr11:67352075-67352306(+)$1	231	110	128	13.3624
ffffffqqqqqqqqffff	chr10:88718425-88718669(+)$1	244	50	68	14.0103
ffffffqqqqqqqqffff	chr18:9126757-9127006(+)$1	249	91	109	14.0103
ffffffqqqqqqqqffff	chr14:21484856-21485291(-)$1	435	282	300	14.0103
ggggggqqqqqqqqgggg	chr22:19776157-19776399(-)$1	242	220	238	13.9857
b[cccaqqqqqqqqa]cc	chr22:38075581-38075855(+)$1	274	228	246	13.8782
!!ddddqqqqqqqqdddd	chr1:93297563-93297775(+)$1	212	26	44	13.0079
ggggggqqqqqqqqgggg	chr11:64084429-64084668(-)$1	239	144	162	13.9857
ffffffqqqqqqqqffff	chr9:19376278-19376482(-)$1	204	135	153	14.0103
"""cccqqqqqqqqccc3	chr6:41756891-41757128(+)$1	237	175	193	14.3172
dddd[aqqqqqqqqa]dd	chr17:18148218-18148568(-)$1	350	304	322	13.2873
####bbqqqqqqqqbbbb	chrX:55035536-55035776(-)$1	240	175	193	12.9827
bb[cccqqqqqqqqccc]	chr11:5290732-5290971(-)$1	239	50	68	14.0786
dddd[aqqqqqqqqa]dd	chr11:64085654-64085870(+)$1	216	46	64	13.2873
#eeeeeqqqqqqqqeeee	chr11:75110510-75110721(+)$1	211	102	120	13.4966
"""cccqqqqqqqqccc5	chr12:56119804-56120030(-)$1	226	165	183	13.4025
ffffffqqqqqqqqffff	chr7:99687947-99688208(+)$1	261	121	139	14.0103
dddcccqqqqqqqqccc]	chr17:73753988-73754280(-)$1	292	184	202	14.0887
b[ddddqqqqqqqqdddd	chr9:132397497-132397735(+)$1	238	104	122	12.8020
bb[cccqqqqqqqqccc]	chr19:50363431-50363690(+)$1	259	131	149	14.0786
ggddddqqqqqqqqdddd	chr11:33731488-33731821(-)$1	333	86	104	12.9390
feeeeeqqqqqqqqeeee	chr16:3713321-3713581(-)$1	260	93	111	13.5080
ffff[aqqqqqqqqa333	chr19:50000350-50000566(+)$1	216	49	67	14.0746
ddd[bbqqqqqqqqbb]d	chr12:6647232-6647436(+)$1	204	93	111	13.7107
"""cccqqqqqqqqcccd	chr19:36142089-36142318(+)$1	229	128	146	14.1669
cc[cccqqqqqqqqccc4	chr1:44443547-44443784(+)$1	237	89	107	14.3997
ffffffqqqqqqqqffff	chr5:149827172-149827380(-)$1	208	17	35	14.0103
eeecccqqqqqqqqcccE	chr6:34212516-34212729(+)$1	213	135	153	13.1096
ccc[bbqqqqqqqqbb]c	chr19:38746678-38746882(-)$1	204	55	73	14.0130
ddd[bbqqqqqqqqbb]d	chr19:5690507-5690711(+)$1	204	100	118	13.7107
ffffbbqqqqqqqqbb]f	chr5:149827195-149827398(-)$1	203	147	165	13.9840
ffffffqqqqqqqqffff	chr11:5289693-5289906(-)$1	213	155	173	14.0103
eee[bbqqqqqqqqbb]e	chr1:155145111-155145351(-)$1	240	25	43	13.9493
ccc[bbqqqqqqqqbb]c	chr19:18685615-18685864(+)$1	249	145	163	14.0130
c"""bbqqqqqqqqbb22	chr7:150778553-150778821(-)$1	268	99	117	13.4714
Deeeeeqqqqqqqqeeee	chr17:38153968-38154258(+)$1	290	10	28	12.5436
ffffffqqqqqqqqffff	chr22:38274071-38274279(+)$1	208	1	19	14.0103
ffffbbqqqqqqqqbb]f	chr19:48833476-48833750(+)$1	274	19	37	13.9840
ccc!!aqqqqqqqqa22c	chr16:89628678-89628900(+)$1	222	141	159	13.4365
[eeeeeqqqqqqqqeeee	chr1:24021126-24021333(+)$1	207	178	196	13.5607
eeeeeeqqqqqqqqeeee	chr20:2636974-2637237(+)$1	263	72	90	13.4037
ggggggqqqqqqqqgggg	chr11:5289664-5289881(-)$1	217	44	62	13.9857
##bb[aqqqqqqqqabbf	chr4:77969529-77969773(-)$1	244	138	156	12.9229
bb[cccqqqqqqqqccc]	chr12:120638434-120638679(-)$1	245	28	46	14.0786
ggggggqqqqqqqqgggg	chr5:1815875-1816130(+)$1	255	186	204	13.9857
hh!!bbqqqqqqqqbb22	chr2:3625240-3625464(+)$1	224	185	203	13.2063
ffffffqqqqqqqqffff	chr10:102286053-102286282(-)$1	229	209	227	14.0103
ffffffqqqqqqqqffff	chr9:19376282-19376486(-)$1	204	139	157	14.0103
ffffffqqqqqqqqffff	chr12:98995156-98995418(+)$1	262	235	253	14.0103
ffffffqqqqqqqqffff	chr5:68524933-68525153(+)$1	220	123	141	14.0103
ccc[bbqqqqqqqqbbcc	chr17:72199958-72200198(+)$1	240	138	156	13.9692
ccccccqqqqqqqqccc]	chr9:131584600-131584939(+)$1	339	0	18	14.3468
ffffffqqqqqqqqffff	chr19:58899455-58899691(+)$1	236	147	165	14.0103
cc!!bbqqqqqqqqbb33	chr16:417512-417797(-)$1	285	255	273	14.1411
ddd[bbqqqqqqqqbb]d	chr11:812672-812875(+)$1	203	37	55	13.7107
ggggggqqqqqqqqgggg	chr15:69747737-69747954(+)$1	217	186	204	13.9857
eeee[aqqqqqqqqa]ee	chr19:54705257-54705484(+)$1	227	111	129	13.7007
ccccccqqqqqqqqccc2	chr8:146017303-146017517(-)$1	214	115	133	14.1071
bb[cccqqqqqqqqccc]	chr4:39457925-39458144(-)$1	219	144	162	14.0786
ceeeeeqqqqqqqqeeee	chr3:197677945-197678191(+)$1	246	149	167	13.5391
dddcccqqqqqqqqccc3	chr9:130931665-130931897(-)$1	232	82	100	14.0671

#otherMatches

#Seq PSSM
AACCAGACUAGAAACUGC	chr19:36142034-36142264(+)$1	230	183	201	14.1669
aagaaaaGAAAAUGUUUC	chr8:30537043-30537287(-)$1	244	69	87	13.0079
CUCGCGUGCUGAUCCGCC	chr19:54710214-54710431(+)$1	217	85	103	14.2739
CCAAGGAGUAAGACCCCU	chr12:6647213-6647418(+)$1	205	112	130	13.7107
GCUCCUGGUCUGUGAGGA	chr1:24021133-24021352(+)$1	219	171	189	13.5607
CGGGAGCUGUAGUUCUCC	chr8:145133559-145133839(+)$1	280	7	25	13.5607
GGGAGCAGCAGAUGGCUC	chr6:43193382-43193621(-)$1	239	21	39	14.2704
GCUGCCGGCCGAGGGGCG	chr19:5691470-5691699(+)$1	229	4	22	12.5713
GUCCUAAGCCGAUAUGGG	chr8:146017059-146017275(-)$1	216	185	203	12.8738
GAGCAUUCUGAUUUAUGU	chr5:158630344-158630583(-)$1	239	177	195	14.0887
GAGCUUUCAAGGAUAGGC	chr11:5269477-5269692(-)$1	215	123	141	13.9857
GGAGACCUCACCCUGUAC	chr11:67352075-67352306(+)$1	231	110	128	13.3624
UUCUCCAUCGCCAAGGAG	chr10:88718425-88718669(+)$1	244	50	68	14.0103
UAUUGAAGAAAUUAUUGA	chr18:9126757-9127006(+)$1	249	91	109	14.0103
CCACACUGUAGUAUGUGU	chr14:21484856-21485291(-)$1	435	282	300	14.0103
CAGGCCCCAGCCUUGGCC	chr22:19776157-19776399(-)$1	242	220	238	13.9857
CCAGCCUCgugugugugc	chr22:38075581-38075855(+)$1	274	228	246	13.8782
CUGUGGCCCUUUUCCCAC	chr1:93297563-93297775(+)$1	212	26	44	13.0079
AAGCGGCCCAUCACUUGC	chr11:64084429-64084668(-)$1	239	144	162	13.9857
CGCAGACUUUCCUCUCUG	chr9:19376278-19376482(-)$1	204	135	153	14.0103
CCAAGUAGGUAAGCACUG	chr6:41756891-41757128(+)$1	237	175	193	14.3172
ACUCUCUCCACAGUGUGA	chr17:18148218-18148568(-)$1	350	304	322	13.2873
CCUAGGAUUCACACCCCA	chrX:55035536-55035776(-)$1	240	175	193	12.9827
GGUGUCAUUUCAUAGACU	chr11:5290732-5290971(-)$1	239	50	68	14.0786
GCGUGUGCGCCCUGAGAC	chr11:64085654-64085870(+)$1	216	46	64	13.2873
AAGAGGAAGGUGAGCCUC	chr11:75110510-75110721(+)$1	211	102	120	13.4966
AAAUGUUUUAGAAUGCAA	chr12:56119804-56120030(-)$1	226	165	183	13.4025
GGGGGGCCACCUGACCCC	chr7:99687947-99688208(+)$1	261	121	139	14.0103
CAGGCCAGUCCCACGGCU	chr17:73753988-73754280(-)$1	292	184	202	14.0887
CGACGUGGACAGCAGCGU	chr9:132397497-132397735(+)$1	238	104	122	12.8020
GGAGUCACAGAUGAGGCC	chr19:50363431-50363690(+)$1	259	131	149	14.0786
AGAGAAAACAGUUCUUCU	chr11:33731488-33731821(-)$1	333	86	104	12.9390
UCUGUGGAGACGGACAUA	chr16:3713321-3713581(-)$1	260	93	111	13.5080
CUGCCGGCUUCAAACUUA	chr19:50000350-50000566(+)$1	216	49	67	14.0746
CCAAGGAGUAAGACCCCU	chr12:6647232-6647436(+)$1	204	93	111	13.7107
AACCAGACUAGAAACUGC	chr19:36142089-36142318(+)$1	229	128	146	14.1669
UGUUCUUUUUUUGCAGAC	chr1:44443547-44443784(+)$1	237	89	107	14.3997
CCAGGGGAAAGGGAUUCU	chr5:149827172-149827380(-)$1	208	17	35	14.0103
GGAGCAGUGACCCAUGCG	chr6:34212516-34212729(+)$1	213	135	153	13.1096
CGUGGAGAAGUGGAUCGA	chr19:38746678-38746882(-)$1	204	55	73	14.0130
CGGGGUGAGUGCGGGUGC	chr19:5690507-5690711(+)$1	204	100	118	13.7107
AGCCUCGGACCUCAGGUG	chr5:149827195-149827398(-)$1	203	147	165	13.9840
GGCAGAAGCUGGUGUCUG	chr11:5289693-5289906(-)$1	213	155	173	14.0103
CCCUGCUGCUCUUUGCUG	chr1:155145111-155145351(-)$1	240	25	43	13.9493
GCGACAAGAUGAUCUGCC	chr19:18685615-18685864(+)$1	249	145	163	14.0130
CCCUUCUUUCCCCUGACC	chr7:150778553-150778821(-)$1	268	99	117	13.4714
ACCCUGACCUCCCCCAGG	chr17:38153968-38154258(+)$1	290	10	28	12.5436
UCUUGUCUUCAAACACAA	chr22:38274071-38274279(+)$1	208	1	19	14.0103
GGAUAUUGGGAAAUGUAG	chr19:48833476-48833750(+)$1	274	19	37	13.9840
AUCCAGGCUUCAGACGAG	chr16:89628678-89628900(+)$1	222	141	159	13.4365
GCUCCUGGUCUGUGAGGA	chr1:24021126-24021333(+)$1	207	178	196	13.5607
AGCCCUGAAGACAAGGGG	chr20:2636974-2637237(+)$1	263	72	90	13.4037
UGCCUAACAGCUCCUGGG	chr11:5289664-5289881(-)$1	217	44	62	13.9857
AAGGACAACAGCAAGCCA	chr4:77969529-77969773(-)$1	244	138	156	12.9229
UCCCUGUCUCUCCUCAGU	chr12:120638434-120638679(-)$1	245	28	46	14.0786
CCUGUGAGCAUUUCCGCG	chr5:1815875-1816130(+)$1	255	186	204	13.9857
UUAAGUUGUAGUUUAUGA	chr2:3625240-3625464(+)$1	224	185	203	13.2063
AGUCAAUACCAAGCUUGG	chr10:102286053-102286282(-)$1	229	209	227	14.0103
CGCAGACUUUCCUCUCUG	chr9:19376282-19376486(-)$1	204	139	157	14.0103
UAGGAAAUUGUCUAUUCC	chr12:98995156-98995418(+)$1	262	235	253	14.0103
GGUGGCUGCUGUUUGUCA	chr5:68524933-68525153(+)$1	220	123	141	14.0103
GGUGAGUACAGUCCCUGC	chr17:72199958-72200198(+)$1	240	138	156	13.9692
CCACAGGACAGAGGCUGA	chr9:131584600-131584939(+)$1	339	0	18	14.3468
UUCCCUGCAGGUGAGGGG	chr19:58899455-58899691(+)$1	236	147	165	14.0103
CCAUGCACCUUCCAGCCC	chr16:417512-417797(-)$1	285	255	273	14.1411
CUGGCCUGGCACUUGGGC	chr11:812672-812875(+)$1	203	37	55	13.7107
GCAAAAAUGGUCUGUUUU	chr15:69747737-69747954(+)$1	217	186	204	13.9857
CGGAACAAACGUGAGGUC	chr19:54705257-54705484(+)$1	227	111	129	13.7007
ACGGCUACAUCAAGGGCA	chr8:146017303-146017517(-)$1	214	115	133	14.1071
UAAGAAAUUUUUCCUUCA	chr4:39457925-39458144(-)$1	219	144	162	14.0786
CUCUUCUUAAAAUUGAAG	chr3:197677945-197678191(+)$1	246	149	167	13.5391
GGCCUGCCUUUUUCCAGA	chr9:130931665-130931897(-)$1	232	82	100	14.0671

#DB
...(((........))))	chr19:36142034-36142264(+)$1	1	183	201	14.1669
..((((........))))	chr8:30537043-30537287(-)$1	1	69	87	13.0079
((.(((........))).	chr19:54710214-54710431(+)$1	1	85	103	14.2739
(((.((........)).)	chr12:6647213-6647418(+)$1	1	112	130	13.7107
.(((((........))))	chr1:24021133-24021352(+)$1	1	171	189	13.5607
.(((((........))))	chr8:145133559-145133839(+)$1	1	7	25	13.5607
((.(((........))))	chr6:43193382-43193621(-)$1	1	21	39	14.2704
.(((((........))))	chr19:5691470-5691699(+)$1	1	4	22	12.5713
.(((((........))))	chr8:146017059-146017275(-)$1	1	185	203	12.8738
((((((........))).	chr5:158630344-158630583(-)$1	1	177	195	14.0887
((((((........))))	chr11:5269477-5269692(-)$1	1	123	141	13.9857
((..((........)).)	chr11:67352075-67352306(+)$1	1	110	128	13.3624
((((((........))))	chr10:88718425-88718669(+)$1	1	50	68	14.0103
((((((........))))	chr18:9126757-9127006(+)$1	1	91	109	14.0103
((((((........))))	chr14:21484856-21485291(-)$1	1	282	300	14.0103
((((((........))))	chr22:19776157-19776399(-)$1	1	220	238	13.9857
(.((((........).))	chr22:38075581-38075855(+)$1	1	228	246	13.8782
..((((........))))	chr1:93297563-93297775(+)$1	1	26	44	13.0079
((((((........))))	chr11:64084429-64084668(-)$1	1	144	162	13.9857
((((((........))))	chr9:19376278-19376482(-)$1	1	135	153	14.0103
...(((........))).	chr6:41756891-41757128(+)$1	1	175	193	14.3172
((((.(........).))	chr17:18148218-18148568(-)$1	1	304	322	13.2873
....((........))))	chrX:55035536-55035776(-)$1	1	175	193	12.9827
((.(((........))).	chr11:5290732-5290971(-)$1	1	50	68	14.0786
((((.(........).))	chr11:64085654-64085870(+)$1	1	46	64	13.2873
.(((((........))))	chr11:75110510-75110721(+)$1	1	102	120	13.4966
...(((........))).	chr12:56119804-56120030(-)$1	1	165	183	13.4025
((((((........))))	chr7:99687947-99688208(+)$1	1	121	139	14.0103
((((((........))).	chr17:73753988-73754280(-)$1	1	184	202	14.0887
(.((((........))))	chr9:132397497-132397735(+)$1	1	104	122	12.8020
((.(((........))).	chr19:50363431-50363690(+)$1	1	131	149	14.0786
((((((........))))	chr11:33731488-33731821(-)$1	1	86	104	12.9390
((((((........))))	chr16:3713321-3713581(-)$1	1	93	111	13.5080
((((.(........)...	chr19:50000350-50000566(+)$1	1	49	67	14.0746
(((.((........)).)	chr12:6647232-6647436(+)$1	1	93	111	13.7107
...(((........))))	chr19:36142089-36142318(+)$1	1	128	146	14.1669
((.(((........))).	chr1:44443547-44443784(+)$1	1	89	107	14.3997
((((((........))))	chr5:149827172-149827380(-)$1	1	17	35	14.0103
)))(((........))))	chr6:34212516-34212729(+)$1	1	135	153	13.1096
(((.((........)).)	chr19:38746678-38746882(-)$1	1	55	73	14.0130
(((.((........)).)	chr19:5690507-5690711(+)$1	1	100	118	13.7107
((((((........)).)	chr5:149827195-149827398(-)$1	1	147	165	13.9840
((((((........))))	chr11:5289693-5289906(-)$1	1	155	173	14.0103
(((.((........)).)	chr1:155145111-155145351(-)$1	1	25	43	13.9493
(((.((........)).)	chr19:18685615-18685864(+)$1	1	145	163	14.0130
(...((........))..	chr7:150778553-150778821(-)$1	1	99	117	13.4714
((((((........))))	chr17:38153968-38154258(+)$1	1	10	28	12.5436
((((((........))))	chr22:38274071-38274279(+)$1	1	1	19	14.0103
((((((........)).)	chr19:48833476-48833750(+)$1	1	19	37	13.9840
(((..(........)..)	chr16:89628678-89628900(+)$1	1	141	159	13.4365
.(((((........))))	chr1:24021126-24021333(+)$1	1	178	196	13.5607
)(((((........))))	chr20:2636974-2637237(+)$1	1	72	90	13.4037
((((((........))))	chr11:5289664-5289881(-)$1	1	44	62	13.9857
..((.(........))))	chr4:77969529-77969773(-)$1	1	138	156	12.9229
((.(((........))).	chr12:120638434-120638679(-)$1	1	28	46	14.0786
((((((........))))	chr5:1815875-1816130(+)$1	1	186	204	13.9857
((..((........))..	chr2:3625240-3625464(+)$1	1	185	203	13.2063
((((((........))))	chr10:102286053-102286282(-)$1	1	209	227	14.0103
((((((........))))	chr9:19376282-19376486(-)$1	1	139	157	14.0103
((((((........))))	chr12:98995156-98995418(+)$1	1	235	253	14.0103
((((((........))))	chr5:68524933-68525153(+)$1	1	123	141	14.0103
(((.((........))))	chr17:72199958-72200198(+)$1	1	138	156	13.9692
((((((........))).	chr9:131584600-131584939(+)$1	1	0	18	14.3468
((((((........))))	chr19:58899455-58899691(+)$1	1	147	165	14.0103
((..((........))..	chr16:417512-417797(-)$1	1	255	273	14.1411
(((.((........)).)	chr11:812672-812875(+)$1	1	37	55	13.7107
((((((........))))	chr15:69747737-69747954(+)$1	1	186	204	13.9857
((((.(........).))	chr19:54705257-54705484(+)$1	1	111	129	13.7007
((((((........))).	chr8:146017303-146017517(-)$1	1	115	133	14.1071
((.(((........))).	chr4:39457925-39458144(-)$1	1	144	162	14.0786
((((((........))))	chr3:197677945-197678191(+)$1	1	149	167	13.5391
((((((........))).	chr9:130931665-130931897(-)$1	1	82	100	14.0671

#PSSM
f : 0.23	d : 0.13	c : 0.13	g : 0.09	b : 0.09	e : 0.06	" : 0.05	[ : 0.04	# : 0.04	! : 0.02	: : 0.01	% : 0.01	D : 0.01	h : 0.01	
f : 0.22	e : 0.19	d : 0.13	c : 0.11	g : 0.09	" : 0.06	b : 0.06	! : 0.02	[ : 0.02	# : 0.02	h : 0.01	
f : 0.22	d : 0.18	e : 0.18	[ : 0.09	c : 0.09	g : 0.08	" : 0.06	! : 0.04	# : 0.01	b : 0.01	
c : 0.25	f : 0.22	e : 0.15	[ : 0.11	d : 0.08	g : 0.08	! : 0.05	# : 0.01	" : 0.01	b : 0.01	
c : 0.25	b : 0.20	f : 0.18	e : 0.13	g : 0.08	[ : 0.06	d : 0.05	! : 0.01	
c : 0.23	b : 0.20	f : 0.18	e : 0.13	a : 0.09	g : 0.08	d : 0.05	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.23	b : 0.20	f : 0.18	e : 0.13	a : 0.09	g : 0.08	d : 0.05	
c : 0.23	b : 0.22	f : 0.18	e : 0.13	g : 0.08	d : 0.05	] : 0.05	3 : 0.01	2 : 0.01	
c : 0.26	f : 0.18	e : 0.15	] : 0.13	d : 0.08	g : 0.08	2 : 0.04	b : 0.02	3 : 0.02	
f : 0.22	e : 0.18	d : 0.16	] : 0.11	g : 0.08	c : 0.06	3 : 0.05	2 : 0.04	b : 0.02	5 : 0.01	4 : 0.01	E : 0.01	

#score	990.0526313124003
#seq	72
#width	18
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_transcript_m3_run2.txt

#BEAR
[ddddddddqqqqqqqqdddd]dddd]a]	chr6:158982479-158982761(+)$1	282	74	103	15.7378
iiii!!cccqqqqqqqqccc]iiiiiiii	chr19:34874820-34875065(+)$1	245	50	79	17.6220
$$$$$ddddqqqqqqqqdddd22ccc]dd	chr15:25333572-25333935(+)$1	363	103	132	15.1364
bccc[cccqqqqqqqqccc]ccc]bb]bb	chr17:76821450-76821820(-)$1	370	215	244	13.7358
iiiiiiiiiqqqqqqqqiiiiiiiii]dd	chr15:25229870-25230136(+)$1	266	101	130	16.6537
ccc[a[cccqqqqqqqqccca]cccbb[g	chr2:236431220-236431495(+)$1	275	62	91	16.3746
ccc[ccc[aqqqqqqqqa]ccc]ccc444	chr10:35686773-35687111(+)$1	338	66	95	17.0664
c!!eeeeebbqqqqqqqqbb]eeeee]cc	chr18:6393817-6394141(-)$1	324	139	168	13.2464
cc[ccccccrrrrrrrrrccc]ccc]ccc	chrY:10037730-10037939(+)$1	209	21	50	12.1878
cc!!ddddrrrrrrrrrdddd22ccc]dd	chr2:149077726-149078056(+)$1	330	205	234	11.6151
gggg!!cccqqqqqqqqccc333gggggg	chr2:153226313-153226611(+)$1	298	229	258	17.4961
dddd[ddddqqqqqqqqddddddddgggg	chr3:195437085-195437368(+)$1	283	89	118	15.5205
gg!!eeeeeqqqqqqqqeeeee]gggggg	chr11:57546104-57546435(+)$1	331	227	256	16.1589
hhhhhddddqqqqqqqqddddffffffll	chr13:113869247-113869542(+)$1	295	196	225	14.5396
eeeeeeeeeqqqqqqqqeeeeeffffff[	chr15:49521800-49522075(+)$1	275	180	209	14.4372
ccc[cccarrrrrrrrra]ccc]ccc22e	chr10:135228536-135228863(+)$1	327	71	100	11.5646
eeee[ddddqqqqqqqqddddeeeee]ee	chr16:89544715-89545010(-)$1	295	28	57	15.8368
cc!!ddddqqqqqqqqdddd333ccc22d	chr1:155658244-155658544(-)$1	300	130	159	14.8491
dddd[ddddqqqqqqqqdddd]dddd]bb	chr21:46281504-46281835(-)$1	331	225	254	15.3778
c[gggggggqqqqqqqqggggggg]cccc	chr17:80228075-80228341(-)$1	266	33	62	16.4290
ee!!a!!bbqqqqqqqqbb22a22eeeee	chr1:9790526-9790789(-)$1	263	94	123	14.5796
cc[ccccccrrrrrrrrrccc]ccc]ccc	chrY:10037740-10037963(+)$1	223	11	40	12.1878
e[ccc[cccqqqqqqqqcccccc]eeeee	chr2:62952158-62952441(+)$1	283	39	68	16.7274
fff!!ddddqqqqqqqqdddd]ffffff]	chr6:143498671-143499052(+)$1	381	345	374	15.6638
ggggggg[aqqqqqqqqa]ggggggg22b	chr6:160131595-160131960(-)$1	365	68	97	16.1635
dd[ccccccqqqqqqqqccc]ccc]dddd	chr7:157168562-157168827(+)$1	265	144	173	16.6994
cc[bb[cccqqqqqqqqccc]bb]ccc]d	chr2:61764488-61764767(-)$1	279	118	147	16.2990
b[ccc[cccqqqqqqqqccc]ccc]bb]b	chr1:20237212-20237475(+)$1	263	72	101	16.1595
cc[eeeeeqqqqqqqqeeeeeccc333ee	chr1:91458739-91459003(-)$1	264	31	60	14.0715
eeeffffffqqqqqqqqffffff]eeeee	chr3:66359342-66359663(+)$1	321	235	264	14.1224
eee!!cccrrrrrrrrrccc22eeeee]d	chr15:25311321-25311616(+)$1	295	66	95	11.1056
[dddd[cccqqqqqqqqccc]dddd]a:a	chr16:24763641-24763961(+)$1	320	7	36	15.2644
chhhhhhhhqqqqqqqqhhhhhhhh]ccc	chr13:113866222-113866481(+)$1	259	200	229	14.4973
ddccc[cccqqqqqqqqcccccc]dddd3	chr2:153256240-153256546(+)$1	306	132	161	16.4950
!!bb!!cccqqqqqqqqcccbb22bb444	chr2:118853236-118853560(+)$1	324	63	92	15.2723
""eeeee[aqqqqqqqqa]eeeee22ccc	chr14:55114729-55114949(+)$1	220	103	132	15.1025
ddddd!!bbqqqqqqqqbb]dddd]dddd	chr15:25310352-25310657(+)$1	305	131	160	14.1069
d!!ccc[bbqqqqqqqqbb]ccc22dddd	chr6:158982903-158983186(+)$1	283	22	51	14.7427
'dddd[cccqqqqqqqqccc]dddd333e	chr2:102315944-102316239(+)$1	295	182	211	15.6819
iiiiiiiiiqqqqqqqqiiiiiiiiibb[	chr3:9510343-9510675(+)$1	332	66	95	15.7831
eeeeeeeeeqqqqqqqqeeeee]eeeee2	chr16:89511385-89511676(-)$1	291	196	225	14.7932
=========qqqqqqqq==========a]	chrY:2715365-2715663(+)$1	298	112	141	16.8840
hhhhhhh[aqqqqqqqqa]hhhhhhhhdd	chr19:57350442-57350739(-)$1	297	252	281	14.6031
gg[a[cccrrrrrrrrrccc]a]gggggg	chr2:42426175-42426409(+)$1	234	71	100	12.2192
hhhhhddddqqqqqqqqdddd]hhhhhhh	chr8:141980661-141980928(-)$1	267	59	88	15.0992
ff"""cccwwwwwwwwwwwwwwccc333f	chr1:20237057-20237316(+)$1	259	105	134	11.5167
cc[ffffffqqqqqqqqffffff]ccc33	chr14:21692481-21692800(-)$1	319	96	125	15.2661
eeeee[cccqqqqqqqqccc]eeeee]cc	chr5:14402700-14403002(+)$1	302	235	264	16.5794
cc[dddd[aqqqqqqqqa]ddddccc]cc	chr10:114823109-114823393(+)$1	284	84	113	16.5390
[a!!eeeeeqqqqqqqqeeeee22a]a33	chr6:3319067-3319390(-)$1	323	256	285	15.8706
cc!!eeeeeqqqqqqqqeeeee22ccc]c	chr4:107030044-107030340(-)$1	296	193	222	16.0327
fffffddddqqqqqqqqddddffffffcc	chr7:7234305-7234538(+)$1	233	36	65	15.0551
eee!!ddddqqqqqqqqdddd4444eeee	chr22:47163603-47163883(+)$1	280	111	140	16.0190
dd[bbddddqqqqqqqqdddd]bb]dddd	chr16:89513842-89514075(-)$1	233	103	132	14.9219
gggggwwwwwwwwwwwwwwggggggg333	chr9:140616849-140617293(+)$1	444	107	136	11.6510
iii!!ddddqqqqqqqqdddd]iiiiiii	chr1:227155218-227155553(+)$1	335	256	285	17.1445
c[ccc[cccqqqqqqqqcccccc]ccc::	chr21:46283372-46283632(-)$1	260	56	85	15.5156
a[gggggggqqqqqqqqggggggg]a333	chr12:133401755-133402069(-)$1	314	182	211	16.5754
=========qqqqqqqq==========cc	chr10:1094471-1094768(-)$1	297	108	137	16.9780

#otherMatches

#Seq PSSM
UGCCCCUUGGAGCUGCAUAGGUGGGCUGG	chr6:158982479-158982761(+)$1	282	74	103	15.7378
CUGAGGUCCUAGGAGCUGGAAUCAGACAG	chr19:34874820-34875065(+)$1	245	50	79	17.6220
ACUGGAUGACAUGGCCCUCGUGACCUGUG	chr15:25333572-25333935(+)$1	363	103	132	15.1364
GGCCAGGUGUCAGGUGGCCAGGCAUUGCC	chr17:76821450-76821820(-)$1	370	215	244	13.7358
guguguguguguguguguaugCGCGCCCG	chr15:25229870-25230136(+)$1	266	101	130	16.6537
GGUGAUGCCGAUGAAGAGGCUGGCCACAA	chr2:236431220-236431495(+)$1	275	62	91	16.3746
AGUGCUGGUGCAAUAUAGGCAGGACUUCC	chr10:35686773-35687111(+)$1	338	66	95	17.0664
ugaggccagcgggugugggcuugguugag	chr18:6393817-6394141(-)$1	324	139	168	13.2464
UUGACCUUGUAUGACUUUUAGCGGUGGAU	chrY:10037730-10037939(+)$1	209	21	50	12.1878
guuUGGUUGUUUgacagaaucucacucug	chr2:149077726-149078056(+)$1	330	205	234	11.6151
AUUUGACUUAUUUUAACAAGAAAAAAUUC	chr2:153226313-153226611(+)$1	298	229	258	17.4961
AGAUGAGGUAUGGAGGGACCUGUCUCCUG	chr3:195437085-195437368(+)$1	283	89	118	15.5205
AGCUCUGCUGAGAAGAGAGCAGCCUUUGU	chr11:57546104-57546435(+)$1	331	227	256	16.1589
CGCGUUCCGUGUGGCUGUGGAGGUCGCUG	chr13:113869247-113869542(+)$1	295	196	225	14.5396
cagcagucguagacaauuggcuggggagc	chr15:49521800-49522075(+)$1	275	180	209	14.4372
gagauggcggcaguacaguccagcuucgg	chr10:135228536-135228863(+)$1	327	71	100	11.5646
UUGUAUGAUGCUCAGUUGUCAGCAGGAUG	chr16:89544715-89545010(-)$1	295	28	57	15.8368
AGGGUCUGAGGGGGAGUGGAGAACUGGGC	chr1:155658244-155658544(-)$1	300	130	159	14.8491
GUCCAGUCUGUUGAUCGAGGCAGGGCCCA	chr21:46281504-46281835(-)$1	331	225	254	15.3778
UGGGGUUCACCUUGCUUUGAGCUUGGCUU	chr17:80228075-80228341(-)$1	266	33	62	16.4290
CGAAGAAGAGGAUGACAUCACCAGCGCCG	chr1:9790526-9790789(-)$1	263	94	123	14.5796
UUGACCUUGUAUGACUUUUAGCGGUGGAU	chrY:10037740-10037963(+)$1	223	11	40	12.1878
cucagcucccaacuccuggacugugugcu	chr2:62952158-62952441(+)$1	283	39	68	16.7274
agugguggcauaucuuggccaggcugguu	chr6:143498671-143499052(+)$1	381	345	374	15.6638
ugguuaugaggugguuauggugaucagag	chr6:160131595-160131960(-)$1	365	68	97	16.1635
CUGGGCCGCGGCUGGGAGUGUGCUGAGGA	chr7:157168562-157168827(+)$1	265	144	173	16.6994
cgggcgggcgggaggaggccggcgugggg	chr2:61764488-61764767(-)$1	279	118	147	16.2990
GCUGCUUCAGUGUGAAAUGAUGUGAUUGU	chr1:20237212-20237475(+)$1	263	72	101	16.1595
gaaucugcauuuagcagcaggucaggaag	chr1:91458739-91459003(-)$1	264	31	60	14.0715
gguugguaggcuauuaauuacugcaucaa	chr3:66359342-66359663(+)$1	321	235	264	14.1224
UGUUCCAGUAUUGGAUUCUGCUACAUCCU	chr15:25311321-25311616(+)$1	295	66	95	11.1056
GAGAAAUGAUAAAUAAUUCAGUUCUGCAU	chr16:24763641-24763961(+)$1	320	7	36	15.2644
acgaagugucuauuuaaauauuuugcuca	chr13:113866222-113866481(+)$1	259	200	229	14.4973
CUAGCUACUGGAUGAAGAGUGCUGAGCAA	chr2:153256240-153256546(+)$1	306	132	161	16.4950
UUUCUUACAAUCCCUUCUGUGAUUGCAAC	chr2:118853236-118853560(+)$1	324	63	92	15.2723
GAGGGGAAUGGAGGCUGACUCCCUGGCAC	chr14:55114729-55114949(+)$1	220	103	132	15.1025
CGUGGAAGUGGAUGGAAAUGUCGCAGGCU	chr15:25310352-25310657(+)$1	305	131	160	14.1069
UGGUAGCAGAUAAAAUCCUCCUAAAAAAC	chr6:158982903-158983186(+)$1	283	22	51	14.7427
UCUCUUUUCUGCGUUGUGAGUAGAGUUUA	chr2:102315944-102316239(+)$1	295	182	211	15.6819
UCCUGUGUGACUGUGACUACACAGGACUG	chr3:9510343-9510675(+)$1	332	66	95	15.7831
GGGCCAGCACACCUGGAUGCUGAGCCUCC	chr16:89511385-89511676(-)$1	291	196	225	14.7932
AAGAAUGGGAGAUUAGGUCUGUUUUUGUG	chrY:2715365-2715663(+)$1	298	112	141	16.8840
GUGCUUGAGAUUUGCUGCGCAGGCGCUGU	chr19:57350442-57350739(-)$1	297	252	281	14.6031
AUGAAGCUAAAGGGUGAAGUGUGAUGGGG	chr2:42426175-42426409(+)$1	234	71	100	12.2192
gauugagauuugacuucaucugcaaucag	chr8:141980661-141980928(-)$1	267	59	88	15.0992
CCAAUGCCAGUUUGAUUCUGAGGGCUUGG	chr1:20237057-20237316(+)$1	259	105	134	11.5167
UAAAGGUAUGAAAGUAGGUGCUUGUAGGA	chr14:21692481-21692800(-)$1	319	96	125	15.2661
ugguaguacaggcggugguagugcuagug	chr5:14402700-14403002(+)$1	302	235	264	16.5794
UUACAGUGCUGGUGAAUGGAUUGAGAUUG	chr10:114823109-114823393(+)$1	284	84	113	16.5390
gugacucucaaaggugagagaggaggcag	chr6:3319067-3319390(-)$1	323	256	285	15.8706
ccuuucugauuuugcuuucagguugguug	chr4:107030044-107030340(-)$1	296	193	222	16.0327
cucuuucucuguauugugggauaguguca	chr7:7234305-7234538(+)$1	233	36	65	15.0551
ggcgugcuugaggagaggagcuggggcca	chr22:47163603-47163883(+)$1	280	111	140	16.0190
UGGACCACAGCAGGGAGUGUGAGUGCACG	chr16:89513842-89514075(-)$1	233	103	132	14.9219
UCUGCAGGAGAAGGAGGGGGUGGACUGAG	chr9:140616849-140617293(+)$1	444	107	136	11.6510
UGCCUGAUGUACGGAGCCAUCUGUGGGUG	chr1:227155218-227155553(+)$1	335	256	285	17.1445
AUAGcucacuauuguauguggcuuuguag	chr21:46283372-46283632(-)$1	260	56	85	15.5156
GGGGGUAGACGAGACACUUUACCUGCGGG	chr12:133401755-133402069(-)$1	314	182	211	16.5754
UGGUCUCCCGAACUGGAGGGAGGCCGGGC	chr10:1094471-1094768(-)$1	297	108	137	16.9780

#DB
.((((((((........)))).)))).).	chr6:158982479-158982761(+)$1	1	74	103	15.7378
((((..(((........))).))))))))	chr19:34874820-34875065(+)$1	1	50	79	17.6220
.....((((........))))..))).))	chr15:25333572-25333935(+)$1	1	103	132	15.1364
((((.(((........))).))).)).))	chr17:76821450-76821820(-)$1	1	215	244	13.7358
(((((((((........))))))))).))	chr15:25229870-25230136(+)$1	1	101	130	16.6537
(((.(.(((........)))).)))((.(	chr2:236431220-236431495(+)$1	1	62	91	16.3746
(((.(((.(........).))).)))...	chr10:35686773-35687111(+)$1	1	66	95	17.0664
(..(((((((........)).))))).))	chr18:6393817-6394141(-)$1	1	139	168	13.2464
((.((((((.........))).))).)))	chrY:10037730-10037939(+)$1	1	21	50	12.1878
((..((((.........))))..))).))	chr2:149077726-149078056(+)$1	1	205	234	11.6151
((((..(((........)))...))))))	chr2:153226313-153226611(+)$1	1	229	258	17.4961
((((.((((........))))))))((((	chr3:195437085-195437368(+)$1	1	89	118	15.5205
((..(((((........))))).))))))	chr11:57546104-57546435(+)$1	1	227	256	16.1589
)))))((((........))))((((((..	chr13:113869247-113869542(+)$1	1	196	225	14.5396
))))(((((........)))))((((((.	chr15:49521800-49522075(+)$1	1	180	209	14.4372
(((.((((.........).))).)))..)	chr10:135228536-135228863(+)$1	1	71	100	11.5646
((((.((((........))))))))).))	chr16:89544715-89545010(-)$1	1	28	57	15.8368
((..((((........))))...)))..)	chr1:155658244-155658544(-)$1	1	130	159	14.8491
((((.((((........)))).)))).))	chr21:46281504-46281835(-)$1	1	225	254	15.3778
(.(((((((........))))))).)))(	chr17:80228075-80228341(-)$1	1	33	62	16.4290
((..(..((........))..)..)))))	chr1:9790526-9790789(-)$1	1	94	123	14.5796
((.((((((.........))).))).)))	chrY:10037740-10037963(+)$1	1	11	40	12.1878
(.(((.(((........)))))).)))))	chr2:62952158-62952441(+)$1	1	39	68	16.7274
(((..((((........)))).)))))).	chr6:143498671-143499052(+)$1	1	345	374	15.6638
(((((((.(........).)))))))..)	chr6:160131595-160131960(-)$1	1	68	97	16.1635
((.((((((........))).))).))))	chr7:157168562-157168827(+)$1	1	144	173	16.6994
((.((.(((........))).)).))).)	chr2:61764488-61764767(-)$1	1	118	147	16.2990
(.(((.(((........))).))).)).)	chr1:20237212-20237475(+)$1	1	72	101	16.1595
((.(((((........))))))))...))	chr1:91458739-91459003(-)$1	1	31	60	14.0715
(((((((((........)))))).)))))	chr3:66359342-66359663(+)$1	1	235	264	14.1224
(((..(((.........)))..))))).)	chr15:25311321-25311616(+)$1	1	66	95	11.1056
.((((.(((........))).)))).).(	chr16:24763641-24763961(+)$1	1	7	36	15.2644
(((((((((........)))))))).)))	chr13:113866222-113866481(+)$1	1	200	229	14.4973
(((((.(((........)))))).)))).	chr2:153256240-153256546(+)$1	1	132	161	16.4950
..((..(((........)))))..))...	chr2:118853236-118853560(+)$1	1	63	92	15.2723
..(((((.(........).)))))..)))	chr14:55114729-55114949(+)$1	1	103	132	15.1025
(((((..((........)).)))).))))	chr15:25310352-25310657(+)$1	1	131	160	14.1069
(..(((.((........)).)))..))))	chr6:158982903-158983186(+)$1	1	22	51	14.7427
.((((.(((........))).))))...)	chr2:102315944-102316239(+)$1	1	182	211	15.6819
(((((((((........)))))))))((.	chr3:9510343-9510675(+)$1	1	66	95	15.7831
(((((((((........))))).))))).	chr16:89511385-89511676(-)$1	1	196	225	14.7932
(((((((((........))))))))))).	chrY:2715365-2715663(+)$1	1	112	141	16.8840
(((((((.(........).))))))))((	chr19:57350442-57350739(-)$1	1	252	281	14.6031
((.(.(((.........))).).))))))	chr2:42426175-42426409(+)$1	1	71	100	12.2192
(((((((((........)))).)))))))	chr8:141980661-141980928(-)$1	1	59	88	15.0992
((...(((..............)))...)	chr1:20237057-20237316(+)$1	1	105	134	11.5167
((.((((((........)))))).)))..	chr14:21692481-21692800(-)$1	1	96	125	15.2661
(((((.(((........))).))))).))	chr5:14402700-14403002(+)$1	1	235	264	16.5794
((.((((.(........).))))))).))	chr10:114823109-114823393(+)$1	1	84	113	16.5390
.(..(((((........)))))..).)..	chr6:3319067-3319390(-)$1	1	256	285	15.8706
((..(((((........)))))..))).)	chr4:107030044-107030340(-)$1	1	193	222	16.0327
)))))((((........))))((((((((	chr7:7234305-7234538(+)$1	1	36	65	15.0551
(((..((((........))))....))))	chr22:47163603-47163883(+)$1	1	111	140	16.0190
((.((((((........)))).)).))))	chr16:89513842-89514075(-)$1	1	103	132	14.9219
(((((..............)))))))...	chr9:140616849-140617293(+)$1	1	107	136	11.6510
(((..((((........)))).)))))))	chr1:227155218-227155553(+)$1	1	256	285	17.1445
(.(((.(((........)))))).)))..	chr21:46283372-46283632(-)$1	1	56	85	15.5156
(.(((((((........))))))).)...	chr12:133401755-133402069(-)$1	1	182	211	16.5754
(((((((((........))))))))))))	chr10:1094471-1094768(-)$1	1	108	137	16.9780

#PSSM
c : 0.27	e : 0.15	d : 0.11	g : 0.08	i : 0.06	[ : 0.05	h : 0.05	f : 0.05	b : 0.03	= : 0.03	$ : 0.01	! : 0.01	" : 0.01	' : 0.01	a : 0.01	
c : 0.22	d : 0.15	e : 0.13	g : 0.08	[ : 0.08	i : 0.06	h : 0.06	! : 0.05	f : 0.05	= : 0.03	$ : 0.01	" : 0.01	a : 0.01	
[ : 0.15	c : 0.13	! : 0.13	e : 0.13	d : 0.10	g : 0.08	i : 0.06	h : 0.06	f : 0.03	= : 0.03	$ : 0.01	b : 0.01	" : 0.01	
! : 0.16	c : 0.15	d : 0.11	e : 0.11	g : 0.08	h : 0.06	i : 0.05	[ : 0.05	b : 0.05	f : 0.05	= : 0.03	$ : 0.01	a : 0.01	" : 0.01	
c : 0.16	e : 0.15	d : 0.11	! : 0.11	[ : 0.08	h : 0.06	g : 0.06	f : 0.05	i : 0.03	a : 0.03	b : 0.03	= : 0.03	$ : 0.01	" : 0.01	
d : 0.25	c : 0.16	[ : 0.15	e : 0.13	! : 0.08	g : 0.05	i : 0.03	f : 0.03	h : 0.03	= : 0.03	w : 0.01	
c : 0.35	d : 0.25	e : 0.13	g : 0.05	i : 0.03	! : 0.03	f : 0.03	h : 0.03	= : 0.03	[ : 0.01	w : 0.01	
c : 0.32	d : 0.23	e : 0.11	[ : 0.08	b : 0.05	i : 0.03	g : 0.03	f : 0.03	= : 0.03	a : 0.01	h : 0.01	w : 0.01	
c : 0.25	d : 0.20	a : 0.08	e : 0.08	b : 0.06	r : 0.06	q : 0.05	i : 0.03	g : 0.03	f : 0.03	= : 0.03	w : 0.03	h : 0.01	
q : 0.84	r : 0.10	w : 0.03	b : 0.01	
q : 0.86	r : 0.10	w : 0.03	
q : 0.86	r : 0.10	w : 0.03	
q : 0.86	r : 0.10	w : 0.03	
q : 0.86	r : 0.10	w : 0.03	
q : 0.86	r : 0.10	w : 0.03	
q : 0.86	r : 0.10	w : 0.03	
q : 0.81	r : 0.10	w : 0.03	c : 0.01	d : 0.01	e : 0.01	
c : 0.27	d : 0.23	a : 0.10	e : 0.10	b : 0.05	i : 0.03	r : 0.03	g : 0.03	f : 0.03	= : 0.03	w : 0.03	q : 0.01	h : 0.01	
c : 0.30	d : 0.23	] : 0.10	e : 0.10	b : 0.06	i : 0.03	g : 0.03	f : 0.03	= : 0.03	w : 0.03	h : 0.01	
c : 0.32	d : 0.25	e : 0.11	g : 0.06	] : 0.05	i : 0.03	f : 0.03	h : 0.03	= : 0.03	b : 0.01	2 : 0.01	w : 0.01	
d : 0.25	] : 0.15	c : 0.15	e : 0.11	g : 0.06	i : 0.03	3 : 0.03	2 : 0.03	f : 0.03	h : 0.03	= : 0.03	a : 0.01	b : 0.01	w : 0.01	
c : 0.16	] : 0.15	e : 0.15	d : 0.08	f : 0.06	g : 0.06	i : 0.05	2 : 0.05	3 : 0.03	a : 0.03	b : 0.03	h : 0.03	= : 0.03	w : 0.01	4 : 0.01	
c : 0.20	d : 0.11	2 : 0.10	f : 0.10	] : 0.08	e : 0.08	i : 0.06	g : 0.06	h : 0.05	3 : 0.03	b : 0.03	= : 0.03	4 : 0.01	
c : 0.22	] : 0.11	g : 0.11	d : 0.10	e : 0.10	2 : 0.08	i : 0.06	f : 0.06	h : 0.05	= : 0.03	4 : 0.01	b : 0.01	
c : 0.23	e : 0.13	d : 0.10	] : 0.10	g : 0.08	i : 0.06	f : 0.06	h : 0.05	b : 0.03	2 : 0.03	= : 0.03	3 : 0.01	a : 0.01	4 : 0.01	
c : 0.18	e : 0.15	d : 0.11	g : 0.10	] : 0.08	i : 0.06	b : 0.06	f : 0.06	3 : 0.05	= : 0.03	h : 0.03	2 : 0.01	a : 0.01	
] : 0.16	c : 0.15	e : 0.10	d : 0.08	3 : 0.08	g : 0.06	f : 0.06	b : 0.05	2 : 0.05	i : 0.03	4 : 0.03	a : 0.03	= : 0.03	h : 0.03	
c : 0.16	d : 0.15	e : 0.11	3 : 0.10	g : 0.06	] : 0.06	b : 0.05	2 : 0.05	a : 0.03	i : 0.03	4 : 0.03	f : 0.03	: : 0.03	[ : 0.01	l : 0.01	h : 0.01	
d : 0.18	c : 0.18	e : 0.13	g : 0.08	3 : 0.08	b : 0.06	] : 0.05	i : 0.03	4 : 0.03	[ : 0.03	l : 0.01	a : 0.01	2 : 0.01	h : 0.01	f : 0.01	: : 0.01	

#score	891.5777226179678
#seq	59
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982GEG_ZRANB2_UTR_m3_run1.txt

#BEAR
+++ccc[ddddoooooodddd]cccdddd33	chr8:110346478-110346728(+)$1	250	47	78	9.2202
[bb"""ccc[bbnnnnnbb]ccc4444bb]a	chr19:54972731-54972959(+)$1	228	4	35	13.9951
ff####dddd[annnnna]dddd333fffff	chr17:61909469-61909689(-)$1	220	84	115	13.9710
fffff!!eeeeennnnneeeee22ffffff]	chr8:110346553-110346808(+)$1	255	137	168	11.5653
eeeeeeee!!bbnnnnnbb]eeeee>>>>>>	chr6:26285603-26285848(-)$1	245	2	33	12.1819
:dddd!!eeeeeooooooeeeee22dddd::	chr17:25635567-25635798(+)$1	231	2	33	9.1632
$$$$dddd[cccnnnnncccdddd4444ccc	chr5:179048268-179048515(-)$1	247	147	178	12.0795
eee!!dddd[bbnnnnnbbdddd4444eeee	chr15:69071858-69072105(-)$1	247	181	212	14.3840
=========[bbnnnnnbb==========::	chr17:76116794-76117062(-)$1	268	3	34	12.0478
hdddd[bb!!bboooooobb333bb]dddd:	chr17:56082236-56082587(-)$1	351	253	284	9.2934
[bb[eeeee[bbnnnnnbbeeeee]bb]a44	chr1:1327778-1328069(-)$1	291	55	86	13.2576
eeee!!bb!!aannnnna]a22bb333eeee	chr7:26230680-26230930(-)$1	250	114	145	13.1795
!bb[eeeee[aooooooa]eeeeebbeeeee	chr17:61909382-61909669(-)$1	287	139	170	11.8363
"""ccc[eeeeennnnneeeee]cccddddd	chr17:76200657-76200965(+)$1	308	196	227	12.2212
eeee[eeeeeaooooooa]eeeee22eeeee	chr19:49605887-49606142(+)$1	255	32	63	12.1827
iii$$$$$ddddooooooddddiiiiiiiii	chr12:69667910-69668187(+)$1	277	139	170	10.1586
ffff####a[bbammmma]bb]a333fffff	chr16:31201578-31201815(+)$1	237	104	135	9.9406
d[a[ccceeeeeooooooeeeee4444ccca	chr11:122932366-122932611(-)$1	245	50	81	13.0620
cc!!ccc[ddddnnnnndddd]ccc22ccc:	chr16:29822015-29822253(+)$1	238	14	45	11.7489

#otherMatches

#Seq PSSM
AUAGGCAGGGUGGCGAGACCCCGCCCCGGAA	chr8:110346478-110346728(+)$1	250	47	78	9.2202
UCGUCUCAAGUUGUAUAAAGUUGUCUCCGUG	chr19:54972731-54972959(+)$1	228	4	35	13.9951
CUGAGGUAUGGGGUAUGUGCAUGUGGAGGCC	chr17:61909469-61909689(-)$1	220	84	115	13.9710
CGCGGUGAUGGUGGUGAGCUAUGCCCGUGGU	chr8:110346553-110346808(+)$1	255	137	168	11.5653
ACCAAAGUUCCGGUAUGCGCGCUUUCAGUCU	chr6:26285603-26285848(-)$1	245	2	33	12.1819
AAGAAAUUUCAUUUGGCUGUGAAUAUUCUAU	chr17:25635567-25635798(+)$1	231	2	33	9.1632
UUCGUUUCAUCUACACCAGAGAAGGCAGACC	chr5:179048268-179048515(-)$1	247	147	178	12.0795
GCCCUGGUUUGUAAAUAGCAACCUAAAGGCG	chr15:69071858-69072105(-)$1	247	181	212	14.3840
UGGAGCUGAUACUGGUUGUUUAGCUCCGGGU	chr17:76116794-76117062(-)$1	268	3	34	12.0478
GGAUUGUCAAAAGGAGGAUUGAGGAGGAUCA	chr17:56082236-56082587(-)$1	351	253	284	9.2934
UGACGAUUGUGCUUCUUGUUAAUCCUCUGUC	chr1:1327778-1328069(-)$1	291	55	86	13.2576
ACCCCCUCCCCCUCCAUGUGAAGAUUUGGGU	chr7:26230680-26230930(-)$1	250	114	145	13.1795
UGGAGCUUGGUGAGGAGGGUGGGCCUAGGGC	chr17:61909382-61909669(-)$1	287	139	170	11.8363
CCGGUGGGCUUUAGGAGGAAGUGCAUCCCUG	chr17:76200657-76200965(+)$1	308	196	227	12.2212
AGGGGGCUGGCUGUGGUGUCCAGCAGCUCUC	chr19:49605887-49606142(+)$1	255	32	63	12.1827
UGAUAUAUGGCCAUUGUCGGCCUUAAACUGC	chr12:69667910-69668187(+)$1	277	139	170	10.1586
gACAGCAGCGAGCUGGUGACUGGAAGUGUCC	chr16:31201578-31201815(+)$1	237	104	135	9.9406
CAGUGGCCCCAGGGGAGGCUGGGAGACGCCC	chr11:122932366-122932611(-)$1	245	50	81	13.0620
CAGAGCUGUCCCAAAGAGGGAAAGCGGUGAG	chr16:29822015-29822253(+)$1	238	14	45	11.7489

#DB
...(((.((((......)))).)))))))..	chr8:110346478-110346728(+)$1	1	47	78	9.2202
.((...(((.((.....)).)))....)).)	chr19:54972731-54972959(+)$1	1	4	35	13.9951
((....((((.(.....).))))...)))))	chr17:61909469-61909689(-)$1	1	84	115	13.9710
(((((..(((((.....)))))..)))))).	chr8:110346553-110346808(+)$1	1	137	168	11.5653
((((((((..((.....)).)))))......	chr6:26285603-26285848(-)$1	1	2	33	12.1819
.((((..(((((......)))))..))))..	chr17:25635567-25635798(+)$1	1	2	33	9.1632
....((((.(((.....)))))))....)))	chr5:179048268-179048515(-)$1	1	147	178	12.0795
(((..((((.((.....))))))....))))	chr15:69071858-69072105(-)$1	1	181	212	14.3840
(((((((((.((.....))))))))))))..	chr17:76116794-76117062(-)$1	1	3	34	12.0478
)((((.((..((......))...)).)))).	chr17:56082236-56082587(-)$1	1	253	284	9.2934
.((.(((((.((.....))))))).)).)..	chr1:1327778-1328069(-)$1	1	55	86	13.2576
((((..((..((.....).)..))...))))	chr7:26230680-26230930(-)$1	1	114	145	13.1795
.((.(((((.(......).))))))))))))	chr17:61909382-61909669(-)$1	1	139	170	11.8363
...(((.(((((.....))))).))))))))	chr17:76200657-76200965(+)$1	1	196	227	12.2212
((((.((((((......).)))))..)))))	chr19:49605887-49606142(+)$1	1	32	63	12.1827
(((.....((((......)))))))))))))	chr12:69667910-69668187(+)$1	1	139	170	10.1586
((((....(.(((....).)).)...)))))	chr16:31201578-31201815(+)$1	1	104	135	9.9406
(.(.((((((((......)))))....))))	chr11:122932366-122932611(-)$1	1	50	81	13.0620
((..(((.((((.....)))).)))..))).	chr16:29822015-29822253(+)$1	1	14	45	11.7489

#PSSM
e : 0.21	f : 0.15	[ : 0.10	+ : 0.05	: : 0.05	$ : 0.05	= : 0.05	h : 0.05	! : 0.05	" : 0.05	i : 0.05	d : 0.05	c : 0.05	
e : 0.21	b : 0.15	f : 0.15	d : 0.10	+ : 0.05	$ : 0.05	= : 0.05	" : 0.05	i : 0.05	[ : 0.05	c : 0.05	
e : 0.21	b : 0.15	f : 0.10	d : 0.10	+ : 0.05	# : 0.05	$ : 0.05	= : 0.05	" : 0.05	i : 0.05	a : 0.05	! : 0.05	
e : 0.15	[ : 0.15	c : 0.10	f : 0.10	d : 0.10	$ : 0.10	! : 0.10	" : 0.05	# : 0.05	= : 0.05	
c : 0.21	e : 0.15	d : 0.15	# : 0.10	! : 0.10	" : 0.05	f : 0.05	= : 0.05	[ : 0.05	$ : 0.05	
c : 0.21	e : 0.21	! : 0.15	# : 0.10	d : 0.10	" : 0.05	= : 0.05	[ : 0.05	$ : 0.05	
e : 0.21	c : 0.15	d : 0.15	[ : 0.10	! : 0.10	b : 0.10	= : 0.05	$ : 0.05	# : 0.05	
e : 0.42	d : 0.21	b : 0.10	c : 0.05	= : 0.05	$ : 0.05	# : 0.05	[ : 0.05	
e : 0.36	d : 0.26	! : 0.15	c : 0.05	[ : 0.05	= : 0.05	a : 0.05	
[ : 0.31	e : 0.26	d : 0.21	! : 0.15	c : 0.05	
b : 0.36	e : 0.21	d : 0.15	a : 0.15	[ : 0.05	c : 0.05	
b : 0.36	e : 0.21	o : 0.15	a : 0.10	d : 0.10	c : 0.05	
n : 0.57	o : 0.36	a : 0.05	
n : 0.57	o : 0.36	m : 0.05	
n : 0.57	o : 0.36	m : 0.05	
n : 0.57	o : 0.36	m : 0.05	
n : 0.57	o : 0.36	m : 0.05	
b : 0.26	a : 0.26	o : 0.21	d : 0.10	e : 0.10	c : 0.05	
b : 0.31	] : 0.26	e : 0.21	d : 0.15	c : 0.05	
e : 0.36	d : 0.26	] : 0.10	b : 0.10	c : 0.05	= : 0.05	a : 0.05	
e : 0.42	d : 0.31	c : 0.05	= : 0.05	3 : 0.05	2 : 0.05	b : 0.05	
e : 0.42	d : 0.21	] : 0.15	c : 0.05	= : 0.05	3 : 0.05	2 : 0.05	
e : 0.31	c : 0.15	d : 0.15	2 : 0.05	= : 0.05	3 : 0.05	b : 0.05	] : 0.05	i : 0.05	a : 0.05	
e : 0.21	c : 0.15	4 : 0.15	3 : 0.10	2 : 0.10	b : 0.10	d : 0.05	= : 0.05	i : 0.05	
4 : 0.21	c : 0.15	3 : 0.15	2 : 0.10	b : 0.10	f : 0.05	e : 0.05	= : 0.05	] : 0.05	i : 0.05	
4 : 0.21	3 : 0.15	d : 0.10	b : 0.10	2 : 0.10	f : 0.05	> : 0.05	= : 0.05	] : 0.05	c : 0.05	i : 0.05	
d : 0.21	4 : 0.21	f : 0.15	e : 0.10	> : 0.05	= : 0.05	b : 0.05	3 : 0.05	i : 0.05	2 : 0.05	
d : 0.21	e : 0.21	f : 0.15	c : 0.10	b : 0.05	> : 0.05	4 : 0.05	= : 0.05	] : 0.05	i : 0.05	
d : 0.21	e : 0.21	f : 0.15	c : 0.15	b : 0.05	> : 0.05	= : 0.05	a : 0.05	i : 0.05	
e : 0.21	f : 0.15	c : 0.15	: : 0.10	d : 0.10	3 : 0.05	] : 0.05	> : 0.05	4 : 0.05	i : 0.05	
: : 0.21	e : 0.21	a : 0.10	f : 0.10	3 : 0.05	] : 0.05	> : 0.05	c : 0.05	4 : 0.05	d : 0.05	i : 0.05	

#score	225.4895899180051
#seq	19
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF092XHF_NIPBL_UTR_m2_run1.txt

#BEAR
ffffff^^^^^^^^^^^^^^^^^^^^^^^^^^	chr13:107196029-107196277(-)$1	248	1	33	20.8832
ggggggga^^^^^^^^^^^^^^^^^^^^^a]g	chr12:104341332-104341586(+)$1	254	198	230	21.6958
beeeeegggggggtttttttttttggggggg:	chr17:8076658-8076871(-)$1	213	56	88	19.9007
beeeeegggggggtttttttttttggggggg:	chr17:8076671-8076902(-)$1	231	87	119	19.9007
ff[ffffffyyyyyyyyyyyyyyyyffffff]	chr1:45244215-45244460(+)$1	245	169	201	21.3542
c[eeeee^^^^^^^^^^^^^^^^^^eeeee]c	chr10:70546202-70546434(+)$1	232	50	82	21.6906
========[a[bb^^^^^^^^^^^^^^^^^^^	chr12:76449748-76449964(-)$1	216	42	74	20.9269
========[a[bb^^^^^^^^^^^^^^^^^^^	chr12:76449740-76449948(-)$1	208	26	58	20.9269
^^^^^^^^^^^^^^^^^^^^^^^^^eeeee::	chr14:102549270-102549477(-)$1	207	9	41	18.6011
bbb!!gggggggvvvvvvvvvvvvvggggggg	chr2:85772082-85772330(+)$1	248	146	178	21.4700
eeeeebb!!eeeeettttttttttteeeee]b	chrX:70793452-70793759(+)$1	307	148	180	19.9432
:eeeee!!ddddvvvvvvvvvvvvvdddd333	chr2:47388758-47389000(-)$1	242	157	189	20.9293
iiiiiiiieeeeeuuuuuuuuuuuueeeee]i	chr11:122929539-122929777(-)$1	238	24	56	22.6244
d!!iiiiiiiiivvvvvvvvvvvvviiiiiii	chr11:67810673-67810988(+)$1	315	230	262	21.8318
beeeeegggggggtttttttttttggggggg:	chr17:8076713-8076964(-)$1	251	149	181	19.9007
iiiiiiiiizzzzzzzzzzzzzzzzziiiiii	chr18:9255445-9255700(+)$1	255	100	132	16.7068
eeeeeccceeeee[assssssssssaeeeeeJ	chr17:27047465-27047735(+)$1	270	174	206	14.3507

#otherMatches

#Seq PSSM
GGUuuuuuguuuuuguuuuuguuuuuUUAAUU	chr13:107196029-107196277(-)$1	248	1	33	20.8832
UAAUCCCCUUCUCCCCUGCACUGUAAAAUGUG	chr12:104341332-104341586(+)$1	254	198	230	21.6958
cugcguaaucaggacuugcaacacccugauug	chr17:8076658-8076871(-)$1	213	56	88	19.9007
cugcguaaucaggacuugcaacacccugauug	chr17:8076671-8076902(-)$1	231	87	119	19.9007
UAAAGGUGUUUAUUGUUUUGUUCCCACAUUUA	chr1:45244215-45244460(+)$1	245	169	201	21.3542
AAAAAAUUUGAAAUUUGAAUACUAUGUUUUCU	chr10:70546202-70546434(+)$1	232	50	82	21.6906
CCAAGAUUGAAGAUGAGAAAAAAGAUGAAGAA	chr12:76449748-76449964(-)$1	216	42	74	20.9269
CCAAGAUUGAAGAUGAGAAAAAAGAUGAAGAA	chr12:76449740-76449948(-)$1	208	26	58	20.9269
aggaugaagaagagaaaaagaagcaggaagag	chr14:102549270-102549477(-)$1	207	9	41	18.6011
GACUUGGCUGGUGUGGUACAGAGAAGCCAGCU	chr2:85772082-85772330(+)$1	248	146	178	21.4700
CUGACCACAUGAUUAAGCCUGUUGAAGUCACU	chrX:70793452-70793759(+)$1	307	148	180	19.9432
CGCCUCAUUCUUCACUUUGAUUUUUAAGAUAA	chr2:47388758-47389000(-)$1	242	157	189	20.9293
CUUCUCUUGUUUGGCUUACUGAUAACAGAUAA	chr11:122929539-122929777(-)$1	238	24	56	22.6244
CCGCGGCUUCCUCAUUGCCAGCUUCAGGGAGC	chr11:67810673-67810988(+)$1	315	230	262	21.8318
cugcguaaucaggacuugcaacacccugauug	chr17:8076713-8076964(-)$1	251	149	181	19.9007
UCUUUUAGGGAGGAAAAAAUAAAAGAUCUAAA	chr18:9255445-9255700(+)$1	255	100	132	16.7068
GCCAGGGUGGCCCACUGCAGUUCUUGGGGCCG	chr17:27047465-27047735(+)$1	270	174	206	14.3507

#DB
((((((..........................	chr13:107196029-107196277(-)$1	1	1	33	20.8832
((((((((.....................).)	chr12:104341332-104341586(+)$1	1	198	230	21.6958
))))))(((((((...........))))))).	chr17:8076658-8076871(-)$1	1	56	88	19.9007
))))))(((((((...........))))))).	chr17:8076671-8076902(-)$1	1	87	119	19.9007
((.((((((................)))))).	chr1:45244215-45244460(+)$1	1	169	201	21.3542
(.(((((..................))))).)	chr10:70546202-70546434(+)$1	1	50	82	21.6906
((((((((.(.((...................	chr12:76449748-76449964(-)$1	1	42	74	20.9269
((((((((.(.((...................	chr12:76449740-76449948(-)$1	1	26	58	20.9269
.........................)))))..	chr14:102549270-102549477(-)$1	1	9	41	18.6011
(((..(((((((.............)))))))	chr2:85772082-85772330(+)$1	1	146	178	21.4700
(((((((..(((((...........))))).)	chrX:70793452-70793759(+)$1	1	148	180	19.9432
.(((((..((((.............))))...	chr2:47388758-47389000(-)$1	1	157	189	20.9293
(((((((((((((............))))).)	chr11:122929539-122929777(-)$1	1	24	56	22.6244
(..(((((((((.............)))))))	chr11:67810673-67810988(+)$1	1	230	262	21.8318
))))))(((((((...........))))))).	chr17:8076713-8076964(-)$1	1	149	181	19.9007
(((((((((.................))))))	chr18:9255445-9255700(+)$1	1	100	132	16.7068
))))))))(((((.(..........)))))))	chr17:27047465-27047735(+)$1	1	174	206	14.3507

#PSSM
b : 0.23	f : 0.11	= : 0.11	e : 0.11	i : 0.11	g : 0.05	c : 0.05	^ : 0.05	: : 0.05	d : 0.05	
e : 0.35	f : 0.11	= : 0.11	i : 0.11	g : 0.05	[ : 0.05	^ : 0.05	b : 0.05	! : 0.05	
e : 0.41	= : 0.11	i : 0.11	f : 0.05	g : 0.05	[ : 0.05	^ : 0.05	b : 0.05	! : 0.05	
e : 0.41	i : 0.17	f : 0.11	= : 0.11	g : 0.05	^ : 0.05	! : 0.05	
e : 0.41	i : 0.17	f : 0.11	= : 0.11	g : 0.05	^ : 0.05	! : 0.05	
e : 0.29	i : 0.17	f : 0.11	g : 0.11	= : 0.11	^ : 0.05	b : 0.05	c : 0.05	
g : 0.29	i : 0.17	^ : 0.11	= : 0.11	f : 0.05	e : 0.05	b : 0.05	! : 0.05	c : 0.05	
g : 0.23	^ : 0.17	i : 0.17	= : 0.11	! : 0.11	a : 0.05	f : 0.05	c : 0.05	
^ : 0.23	g : 0.23	[ : 0.11	e : 0.11	i : 0.11	f : 0.05	! : 0.05	d : 0.05	
^ : 0.23	g : 0.23	e : 0.17	a : 0.11	y : 0.05	d : 0.05	i : 0.05	z : 0.05	
^ : 0.23	g : 0.23	e : 0.17	[ : 0.11	y : 0.05	d : 0.05	i : 0.05	z : 0.05	
^ : 0.23	g : 0.23	e : 0.17	b : 0.11	y : 0.05	d : 0.05	i : 0.05	z : 0.05	
^ : 0.23	g : 0.17	v : 0.17	e : 0.17	b : 0.11	y : 0.05	z : 0.05	
^ : 0.35	t : 0.17	v : 0.17	y : 0.05	e : 0.05	u : 0.05	z : 0.05	[ : 0.05	
^ : 0.35	t : 0.23	v : 0.17	y : 0.05	u : 0.05	z : 0.05	a : 0.05	
^ : 0.35	t : 0.23	v : 0.17	y : 0.05	u : 0.05	z : 0.05	s : 0.05	
^ : 0.35	t : 0.23	v : 0.17	y : 0.05	u : 0.05	z : 0.05	s : 0.05	
^ : 0.35	t : 0.23	v : 0.17	y : 0.05	u : 0.05	z : 0.05	s : 0.05	
^ : 0.35	t : 0.23	v : 0.17	y : 0.05	u : 0.05	z : 0.05	s : 0.05	
^ : 0.35	t : 0.23	v : 0.17	y : 0.05	u : 0.05	z : 0.05	s : 0.05	
^ : 0.35	t : 0.23	v : 0.17	y : 0.05	u : 0.05	z : 0.05	s : 0.05	
^ : 0.35	t : 0.23	v : 0.17	y : 0.05	u : 0.05	z : 0.05	s : 0.05	
^ : 0.35	t : 0.23	v : 0.17	y : 0.05	u : 0.05	z : 0.05	s : 0.05	
^ : 0.35	t : 0.23	v : 0.17	y : 0.05	u : 0.05	z : 0.05	s : 0.05	
^ : 0.35	g : 0.17	v : 0.17	y : 0.05	t : 0.05	u : 0.05	z : 0.05	s : 0.05	
^ : 0.23	g : 0.23	e : 0.23	f : 0.05	d : 0.05	i : 0.05	z : 0.05	a : 0.05	
e : 0.29	^ : 0.23	g : 0.23	i : 0.11	f : 0.05	d : 0.05	
e : 0.29	^ : 0.23	g : 0.23	i : 0.11	f : 0.05	d : 0.05	
e : 0.29	^ : 0.23	g : 0.23	i : 0.11	f : 0.05	d : 0.05	
e : 0.29	g : 0.23	^ : 0.17	i : 0.11	a : 0.05	f : 0.05	3 : 0.05	
] : 0.23	g : 0.23	^ : 0.17	i : 0.11	f : 0.05	: : 0.05	3 : 0.05	e : 0.05	
: : 0.23	^ : 0.17	i : 0.17	g : 0.11	] : 0.05	c : 0.05	b : 0.05	3 : 0.05	J : 0.05	

#score	343.6376487183354
#seq	17
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF170SCU_PTBP1_CDS_m1_run1.txt

#BEAR
ccc^^^^^^^^^^^^^^^^^^^^^^^	chr14:76644089-76644354(+)$1	265	99	125	25.7118
eee^^^^^^^^^^^^^^^^^^^eeee	chr14:39564099-39564356(-)$1	257	82	108	23.5145
eee^^^^^^^^^^^^^^^^^^^^^^^	chr19:13002965-13003253(+)$1	288	75	101	25.6829
ggggggguuuuuuuuuuuuggggggg	chr2:74599961-74600266(-)$1	305	266	292	18.2922
f####cccvvvvvvvvvvvvvccc]f	chr19:45912070-45912316(-)$1	246	208	234	19.7120
iiiiiiixxxxxxxxxxxxxxxiiii	chr20:30155720-30156028(+)$1	308	195	221	19.5289
ccc^^^^^^^^^^^^^^^^^^^^^^^	chr5:126860328-126860612(+)$1	284	120	146	25.7118
ggggggguuuuuuuuuuuuggggggg	chr1:180042806-180043125(+)$1	319	207	233	18.2922
ddd^^^^^^^^^^^^^^^^^^^^^^^	chr2:99197899-99198177(+)$1	278	63	89	25.3996
ccc!!accc^^^^^^^^^^^^^^^^^	chr6:33179870-33180182(+)$1	312	161	187	22.0283
ffffffyyyyyyyyyyyyyyyyffff	chr9:115092622-115092948(-)$1	326	252	278	21.2238
cbb[bbyyyyyyyyyyyyyyyybb]b	chr2:70129459-70129788(+)$1	329	144	170	21.2924
!!bb[avvvvvvvvvvvvva]bb22d	chr19:42401902-42402248(+)$1	346	129	155	19.1059
ggg^^^^^^^^^^^^^^^^^^^^^gg	chr6:56329349-56329600(-)$1	251	30	56	24.9490
eee^^^^^^^^^^^^^^^^^^^^^^^	chr5:112227542-112227835(-)$1	293	79	105	25.6829
ggg[ccc^^^^^^^^^^^^^^^^^^^	chr11:85671692-85671980(-)$1	288	58	84	23.9044
eee^^^^^^^^^^^^^^^^^^^^^^^	chr9:13186284-13186541(-)$1	257	115	141	25.6829
ccc^^^^^^^^^^^^^^^^^^^^^^^	chr6:30610411-30610667(+)$1	256	39	65	25.7118
:ffffffwwwwwwwwwwwwwwfffff	chr12:57113947-57114188(-)$1	241	134	160	18.5316
ddd^^^^^^^^^^^^^^^^^^^^^^^	chr6:168355016-168355260(+)$1	244	64	90	25.3996
hhh!!bbwwwwwwwwwwwwwwbb22h	chrX:76849214-76849509(-)$1	295	162	188	20.3760
cceeeeewwwwwwwwwwwwwweeeee	chrX:21863303-21863595(+)$1	292	210	236	20.0165
ccc^^^^^^^^^^^^^^^^^^^^^^^	chr16:15696298-15696592(-)$1	294	68	94	25.7118
eee^^^^^^^^^^^^^^^^^^^^^^^	chr19:47230726-47231055(-)$1	329	194	220	25.6829
eee^^^^^^^^^^^^^^^^^^^^^^^	chr8:30406948-30407192(+)$1	244	45	71	25.6829
hhhh[cccuuuuuuuuuuuuccc444	chr14:24658521-24658824(-)$1	303	167	193	19.2966
##bbzzzzzzzzzzzzzzzzzbb333	chr6:33286466-33286762(-)$1	296	240	266	17.6321
ddd^^^^^^^^^^^^^^^^^^^^^^^	chr6:43415198-43415535(+)$1	337	34	60	25.3996
%eeeeexxxxxxxxxxxxxxxeeeee	chrX:151129623-151129885(-)$1	262	93	119	18.5903
c^^^^^^^^^^^^^^^^^^^ccc22f	chr17:7369626-7369951(-)$1	325	181	207	21.7010
fff^^^^^^^^^^^^^^^^^^^^^^^	chr13:39586883-39587205(-)$1	322	92	118	25.5271
hhhhhhhyyyyyyyyyyyyyyyyhhh	chr2:242755983-242756228(+)$1	245	190	216	18.8916
ggggggguuuuuuuuuuuuggggggg	chr1:17939366-17939661(+)$1	295	222	248	18.2922
ggggggguuuuuuuuuuuuggggggg	chr5:140953330-140953659(-)$1	329	109	135	18.2922
ggg!!ccc^^^^^^^^^^^^^^^^^^	chr12:57115111-57115388(-)$1	277	77	103	23.2142
eee[cccvvvvvvvvvvvvvccc]ee	chr8:30406992-30407253(+)$1	261	89	115	19.7958
gggg[bbuuuuuuuuuuuubbggggg	chr9:111848182-111848491(-)$1	309	59	85	18.4807
dbb[dddduuuuuuuuuuuudddd]b	chr2:187511227-187511525(+)$1	298	35	61	17.2380
ddd####bbuuuuuuuuuuuubb22d	chr19:54610231-54610505(+)$1	274	25	51	18.7448
[bb[bbyyyyyyyyyyyyyyyybb]b	chr2:70129596-70129938(+)$1	342	7	33	21.2797
ffffffbbvvvvvvvvvvvvvbb]ff	chr1:109816461-109816799(+)$1	338	80	106	18.4861
ggg^^^^^^^^^^^^^^^^^^^^^^^	chr3:133347461-133347770(-)$1	309	124	150	25.8315
::eeeeewwwwwwwwwwwwwweeeee	chr12:120150389-120150672(-)$1	283	45	71	17.9023
hhh^^^^^^^^^^^^^^^^^^^^hhh	chr17:40654629-40654945(+)$1	316	157	183	22.9205
fff^^^^^^^^^^^^^^^^^^^^^^^	chr11:101827393-101827693(+)$1	300	150	176	25.5271
gggggggvvvvvvvvvvvvvgggggg	chr1:14107346-14107648(+)$1	302	185	211	19.0691
dddd!!bbvvvvvvvvvvvvvbb22d	chr11:46686264-46686552(+)$1	288	75	101	18.9941
fffddddwwwwwwwwwwwwwwdddd:	chr3:53265383-53265666(-)$1	283	179	205	18.3884
ee::cccyyyyyyyyyyyyyyyyccc	chr15:59191623-59191911(+)$1	288	196	222	20.1481
f[eeeeeuuuuuuuuuuuueeeee]f	chr1:10342203-10342486(+)$1	283	45	71	18.1432
ffffffxxxxxxxxxxxxxxxfffff	chr12:7045584-7045878(+)$1	294	223	249	18.9751
ddd^^^^^^^^^^^^^^^^^^^^^^^	chr4:1215494-1215783(-)$1	289	101	127	25.3996
eee^^^^^^^^^^^^^^^^^^^^^^^	chr4:74269944-74270159(+)$1	215	108	134	25.6829

#otherMatches

#Seq PSSM
acuucuuuuauuguuuucuuuccugu	chr14:76644089-76644354(+)$1	265	99	125	25.7118
gcaauuucaauauccuccuaccugcu	chr14:39564099-39564356(-)$1	257	82	108	23.5145
AAGCCUcuuccuccuucccucccucc	chr19:13002965-13003253(+)$1	288	75	101	25.6829
GCAUGUGGAUGUAUGAGGGCACGUGU	chr2:74599961-74600266(-)$1	305	266	292	18.2922
CUUUUGCCUCUUUCUCUUUUUGGUCG	chr19:45912070-45912316(-)$1	246	208	234	19.7120
CGAGGCUCACCCACUUCCCCACAGUC	chr20:30155720-30156028(+)$1	308	195	221	19.5289
CCCACCUUCAACUUCUGCCCCAAACA	chr5:126860328-126860612(+)$1	284	120	146	25.7118
CCAGCUGUAUAUCUACAACCAGUUGG	chr1:180042806-180043125(+)$1	319	207	233	18.2922
GUGucuucuuuuuuucuuuauuuucu	chr2:99197899-99198177(+)$1	278	63	89	25.3996
uuccucucucuuuuccccucucuccc	chr6:33179870-33180182(+)$1	312	161	187	22.0283
AUAUGCAUUUUUAUAUCUUUUGGCAU	chr9:115092622-115092948(-)$1	326	252	278	21.2238
ugcugcuguuucuguuuccucugcug	chr2:70129459-70129788(+)$1	329	144	170	21.2924
uuggucucuCCUUGUCUCUGUCCCCG	chr19:42401902-42402248(+)$1	346	129	155	19.1059
GUGUCAUUUUUUCUAGUUCAUCAUCA	chr6:56329349-56329600(-)$1	251	30	56	24.9490
AGCUUCCucuuuuucuuucuucuccu	chr5:112227542-112227835(-)$1	293	79	105	25.6829
ACAAAACCAAAACCACUUCUUCUUUC	chr11:85671692-85671980(-)$1	288	58	84	23.9044
uguucucucucuuuucCAUGAAUACC	chr9:13186284-13186541(-)$1	257	115	141	25.6829
GAUUUCUCUUUUUUUCUACCAAAACC	chr6:30610411-30610667(+)$1	256	39	65	25.7118
UGCCACUUAUCAUUAUCCUUUAGUGG	chr12:57113947-57114188(-)$1	241	134	160	18.5316
AACUUUUUUUUCCACACUUCAUCUUU	chr6:168355016-168355260(+)$1	244	64	90	25.3996
CUACUUAUGUUCCAUUUGUCUUAUUU	chrX:76849214-76849509(-)$1	295	162	188	20.3760
CUUUUCGCUUUAAAUAACUAUCGAAA	chrX:21863303-21863595(+)$1	292	210	236	20.0165
GAAUAUAUCCCUCCUCCUUuucuuuc	chr16:15696298-15696592(-)$1	294	68	94	25.7118
uggcccucucugccccucccucCCCU	chr19:47230726-47231055(-)$1	329	194	220	25.6829
UACCUUUUCCUCUCAACCUGCAGCUC	chr8:30406948-30407192(+)$1	244	45	71	25.6829
CAUCCGGUAUAUCUAUGUUAACCUCA	chr14:24658521-24658824(-)$1	303	167	193	19.2966
UAGCUGCCUCCCCUUCUCCCUGCCUC	chr6:33286466-33286762(-)$1	296	240	266	17.6321
AUCUUUCUCAGCUCCCAUAACCUCUC	chr6:43415198-43415535(+)$1	337	34	60	25.3996
AAUGGAUUCUCACUCUUGCCCUCUAU	chrX:151129623-151129885(-)$1	262	93	119	18.5903
CCCUGCUUCUUCCCCACCCCGGGUCC	chr17:7369626-7369951(-)$1	325	181	207	21.7010
CAGCACCUUUCCCCCUCAACCUGUCC	chr13:39586883-39587205(-)$1	322	92	118	25.5271
GCACCGUCUUCCUCUUCUUCAUCGCG	chr2:242755983-242756228(+)$1	245	190	216	18.8916
GCCAGGACUAAGAGAGACAUCUUGGC	chr1:17939366-17939661(+)$1	295	222	248	18.2922
GGGGGUGUUUGCAUCUCCUCACCCCC	chr5:140953330-140953659(-)$1	329	109	135	18.2922
GGGCUGCAUAACUCACCUUUUUUCUC	chr12:57115111-57115388(-)$1	277	77	103	23.2142
CCUGGCCUGGUUUCCUGUUUGGUGAG	chr8:30406992-30407253(+)$1	261	89	115	19.7958
UCCCUAGUUUUUCCUUUGUCUGGGAU	chr9:111848182-111848491(-)$1	309	59	85	18.4807
AUCUGUACAAAUAAUUACAAGUACUG	chr2:187511227-187511525(+)$1	298	35	61	17.2380
UGUGAAAACCAACCCCCGAACGUGAG	chr19:54610231-54610505(+)$1	274	25	51	18.7448
ugcugcuguuucuguuuccucugcug	chr2:70129596-70129938(+)$1	342	7	33	21.2797
GCUUUCCUGUUUCCUUCGUCUGGUGA	chr1:109816461-109816799(+)$1	338	80	106	18.4861
UAUUAACCCAUCUUGCUucucucucu	chr3:133347461-133347770(-)$1	309	124	150	25.8315
UCGUGCGCCUCUCUUUACACACGUAc	chr12:120150389-120150672(-)$1	283	45	71	17.9023
CUUCUUUUCUUCCAUUCACUAUCAGG	chr17:40654629-40654945(+)$1	316	157	183	22.9205
ccaucuccuuuuAUUCCUAUCCACCC	chr11:101827393-101827693(+)$1	300	150	176	25.5271
UAUCAUCUGUUGUUUCCUCUGGUGAU	chr1:14107346-14107648(+)$1	302	185	211	19.0691
GGGAUUGCcuauuuuuuccuugccuu	chr11:46686264-46686552(+)$1	288	75	101	18.9941
CCAGAUCCAGAGCAAAAAGAAGAUCC	chr3:53265383-53265666(-)$1	283	179	205	18.3884
GUUCGCAUUCAUCUCAUAAUCCUUGC	chr15:59191623-59191911(+)$1	288	196	222	20.1481
AUAGCGUGUCUUGGUCUUGGCGCUUU	chr1:10342203-10342486(+)$1	283	45	71	18.1432
GGCCCCUUCCCUCCCUCUACUGGGGC	chr12:7045584-7045878(+)$1	294	223	249	18.9751
uucuuuccucccuccuucccuuccuu	chr4:1215494-1215783(-)$1	289	101	127	25.3996
GGUAACCUUUAUUUCCCUUCUUUUUC	chr4:74269944-74270159(+)$1	215	108	134	25.6829

#DB
(((.......................	chr14:76644089-76644354(+)$1	1	99	125	25.7118
(((...................))))	chr14:39564099-39564356(-)$1	1	82	108	23.5145
(((.......................	chr19:13002965-13003253(+)$1	1	75	101	25.6829
(((((((............)))))))	chr2:74599961-74600266(-)$1	1	266	292	18.2922
(....(((.............))).)	chr19:45912070-45912316(-)$1	1	208	234	19.7120
(((((((...............))))	chr20:30155720-30156028(+)$1	1	195	221	19.5289
(((.......................	chr5:126860328-126860612(+)$1	1	120	146	25.7118
(((((((............)))))))	chr1:180042806-180043125(+)$1	1	207	233	18.2922
(((.......................	chr2:99197899-99198177(+)$1	1	63	89	25.3996
(((..((((.................	chr6:33179870-33180182(+)$1	1	161	187	22.0283
((((((................))))	chr9:115092622-115092948(-)$1	1	252	278	21.2238
)((.((................)).)	chr2:70129459-70129788(+)$1	1	144	170	21.2924
..((.(.............).))..)	chr19:42401902-42402248(+)$1	1	129	155	19.1059
(((.....................))	chr6:56329349-56329600(-)$1	1	30	56	24.9490
(((.......................	chr5:112227542-112227835(-)$1	1	79	105	25.6829
(((.(((...................	chr11:85671692-85671980(-)$1	1	58	84	23.9044
(((.......................	chr9:13186284-13186541(-)$1	1	115	141	25.6829
(((.......................	chr6:30610411-30610667(+)$1	1	39	65	25.7118
.((((((..............)))))	chr12:57113947-57114188(-)$1	1	134	160	18.5316
(((.......................	chr6:168355016-168355260(+)$1	1	64	90	25.3996
(((..((..............))..)	chrX:76849214-76849509(-)$1	1	162	188	20.3760
(((((((..............)))))	chrX:21863303-21863595(+)$1	1	210	236	20.0165
(((.......................	chr16:15696298-15696592(-)$1	1	68	94	25.7118
(((.......................	chr19:47230726-47231055(-)$1	1	194	220	25.6829
(((.......................	chr8:30406948-30407192(+)$1	1	45	71	25.6829
((((.(((............)))...	chr14:24658521-24658824(-)$1	1	167	193	19.2966
..((.................))...	chr6:33286466-33286762(-)$1	1	240	266	17.6321
(((.......................	chr6:43415198-43415535(+)$1	1	34	60	25.3996
.(((((...............)))))	chrX:151129623-151129885(-)$1	1	93	119	18.5903
(...................)))..)	chr17:7369626-7369951(-)$1	1	181	207	21.7010
(((.......................	chr13:39586883-39587205(-)$1	1	92	118	25.5271
(((((((................)))	chr2:242755983-242756228(+)$1	1	190	216	18.8916
(((((((............)))))))	chr1:17939366-17939661(+)$1	1	222	248	18.2922
(((((((............)))))))	chr5:140953330-140953659(-)$1	1	109	135	18.2922
(((..(((..................	chr12:57115111-57115388(-)$1	1	77	103	23.2142
(((.(((.............))).))	chr8:30406992-30407253(+)$1	1	89	115	19.7958
((((.((............)))))))	chr9:111848182-111848491(-)$1	1	59	85	18.4807
(((.((((............)))).)	chr2:187511227-187511525(+)$1	1	35	61	17.2380
(((....((............))..)	chr19:54610231-54610505(+)$1	1	25	51	18.7448
.((.((................)).)	chr2:70129596-70129938(+)$1	1	7	33	21.2797
((((((((.............)).))	chr1:109816461-109816799(+)$1	1	80	106	18.4861
(((.......................	chr3:133347461-133347770(-)$1	1	124	150	25.8315
..(((((..............)))))	chr12:120150389-120150672(-)$1	1	45	71	17.9023
(((....................)))	chr17:40654629-40654945(+)$1	1	157	183	22.9205
(((.......................	chr11:101827393-101827693(+)$1	1	150	176	25.5271
(((((((.............))))))	chr1:14107346-14107648(+)$1	1	185	211	19.0691
((((..((.............))..)	chr11:46686264-46686552(+)$1	1	75	101	18.9941
)))((((..............)))).	chr3:53265383-53265666(-)$1	1	179	205	18.3884
))..(((................)))	chr15:59191623-59191911(+)$1	1	196	222	20.1481
(.(((((............))))).)	chr1:10342203-10342486(+)$1	1	45	71	18.1432
((((((...............)))))	chr12:7045584-7045878(+)$1	1	223	249	18.9751
(((.......................	chr4:1215494-1215783(-)$1	1	101	127	25.3996
(((.......................	chr4:74269944-74270159(+)$1	1	108	134	25.6829

#PSSM
g : 0.18	e : 0.16	c : 0.15	f : 0.15	d : 0.13	h : 0.07	: : 0.03	i : 0.01	! : 0.01	# : 0.01	% : 0.01	[ : 0.01	
e : 0.18	g : 0.18	f : 0.13	c : 0.11	d : 0.11	h : 0.07	b : 0.05	# : 0.03	i : 0.01	! : 0.01	^ : 0.01	: : 0.01	[ : 0.01	
e : 0.22	g : 0.18	f : 0.13	d : 0.11	c : 0.09	b : 0.09	h : 0.07	# : 0.01	i : 0.01	^ : 0.01	: : 0.01	
^ : 0.39	g : 0.11	[ : 0.09	f : 0.07	e : 0.07	! : 0.05	# : 0.03	b : 0.03	h : 0.03	d : 0.03	i : 0.01	: : 0.01	
^ : 0.39	g : 0.09	! : 0.07	f : 0.07	e : 0.07	[ : 0.05	c : 0.05	# : 0.03	b : 0.03	d : 0.03	i : 0.01	z : 0.01	h : 0.01	
^ : 0.39	c : 0.11	g : 0.09	f : 0.07	b : 0.07	e : 0.07	a : 0.03	d : 0.03	i : 0.01	z : 0.01	h : 0.01	# : 0.01	! : 0.01	
^ : 0.39	c : 0.13	g : 0.09	b : 0.07	y : 0.05	e : 0.05	x : 0.03	d : 0.03	i : 0.01	v : 0.01	f : 0.01	z : 0.01	h : 0.01	# : 0.01	
^ : 0.41	u : 0.11	y : 0.09	w : 0.09	c : 0.07	x : 0.05	v : 0.05	b : 0.05	z : 0.01	d : 0.01	
^ : 0.43	u : 0.15	v : 0.11	y : 0.09	w : 0.09	x : 0.05	c : 0.01	z : 0.01	b : 0.01	
^ : 0.45	u : 0.16	v : 0.11	y : 0.09	w : 0.09	x : 0.05	z : 0.01	
^ : 0.45	u : 0.16	v : 0.11	y : 0.09	w : 0.09	x : 0.05	z : 0.01	
^ : 0.45	u : 0.16	v : 0.11	y : 0.09	w : 0.09	x : 0.05	z : 0.01	
^ : 0.45	u : 0.16	v : 0.11	y : 0.09	w : 0.09	x : 0.05	z : 0.01	
^ : 0.45	u : 0.16	v : 0.11	y : 0.09	w : 0.09	x : 0.05	z : 0.01	
^ : 0.45	u : 0.16	v : 0.11	y : 0.09	w : 0.09	x : 0.05	z : 0.01	
^ : 0.45	u : 0.16	v : 0.11	y : 0.09	w : 0.09	x : 0.05	z : 0.01	
^ : 0.45	u : 0.16	v : 0.11	y : 0.09	w : 0.09	x : 0.05	z : 0.01	
^ : 0.45	u : 0.16	v : 0.11	y : 0.09	w : 0.09	x : 0.05	z : 0.01	
^ : 0.45	u : 0.16	v : 0.11	y : 0.09	w : 0.09	x : 0.05	z : 0.01	
^ : 0.45	v : 0.09	y : 0.09	w : 0.09	g : 0.07	x : 0.05	u : 0.05	a : 0.01	z : 0.01	b : 0.01	e : 0.01	
^ : 0.43	g : 0.09	y : 0.09	w : 0.09	v : 0.05	x : 0.05	c : 0.05	] : 0.01	z : 0.01	b : 0.01	d : 0.01	u : 0.01	e : 0.01	
^ : 0.43	g : 0.11	b : 0.11	y : 0.09	c : 0.07	e : 0.07	f : 0.03	d : 0.03	x : 0.01	
^ : 0.41	b : 0.15	g : 0.11	e : 0.09	c : 0.07	f : 0.05	y : 0.03	d : 0.03	i : 0.01	
^ : 0.39	g : 0.11	e : 0.09	2 : 0.09	f : 0.05	c : 0.03	b : 0.03	h : 0.03	] : 0.03	d : 0.03	i : 0.01	4 : 0.01	3 : 0.01	
^ : 0.37	g : 0.13	e : 0.09	] : 0.09	2 : 0.09	f : 0.07	h : 0.03	i : 0.01	4 : 0.01	3 : 0.01	d : 0.01	c : 0.01	
^ : 0.37	g : 0.13	f : 0.13	e : 0.09	b : 0.05	d : 0.05	h : 0.05	i : 0.01	4 : 0.01	3 : 0.01	: : 0.01	c : 0.01	

#score	1150.6751691453546
#seq	53
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_CDS_m3_run2.txt

#BEAR
c[cccooooooccccc	chr3:52028009-52028243(-)$1	234	189	205	10.4868
a[cccooooooccc]a	chr8:97299163-97299423(+)$1	260	201	217	10.6870
:ddddooooooddddH	chr3:48788658-48788985(-)$1	327	160	176	11.7406
cddddoooooodddd]	chr1:185089123-185089393(-)$1	270	69	85	13.0023
!ddddoooooodddd2	chr6:7229566-7229865(+)$1	299	144	160	13.1895
[ddddoooooodddde	chr7:105739503-105739715(-)$1	212	51	67	13.0007
eeeeeooooooeeeee	chr2:20885283-20885596(-)$1	313	211	227	11.0090
"ddddoooooodddd]	chr16:28187167-28187448(-)$1	281	142	158	13.2824
eeeeeooooooeeeee	chr2:177191451-177191723(+)$1	272	27	43	11.0090
##cccooooooccc22	chr16:2816440-2816668(+)$1	228	193	209	10.6116
"ddddoooooodddd2	chr12:49433747-49434057(-)$1	310	209	225	13.1730
eddddoooooodddd:	chr14:55529887-55530141(+)$1	254	22	38	12.2550
:ddddoooooodddd:	chr21:38884196-38884509(+)$1	313	23	39	11.7791
[ddddoooooodddd]	chr12:49426624-49426907(-)$1	283	46	62	13.2261
:ddddoooooodddde	chr9:115337192-115337483(+)$1	291	211	227	12.2806
eeeeeooooooeeeee	chr12:56676106-56676373(-)$1	267	80	96	11.0090
!ddddoooooodddd]	chr14:105930266-105930575(+)$1	309	251	267	13.2988
cacccooooooccc22	chr17:1584122-1584354(-)$1	232	120	136	10.3897
[ddddoooooodddd]	chr7:151878148-151878396(-)$1	248	225	241	13.2261
[ddddoooooodddd]	chr9:114989590-114989809(-)$1	219	140	156	13.2261
eeeeeooooooeeeee	chr13:45914028-45914244(-)$1	216	67	83	11.0090
c[cccooooooccccc	chr1:205589026-205589349(-)$1	323	256	272	10.4868
:ddddooooooddddd	chrX:77160611-77160919(+)$1	308	220	236	12.1368
:ddddoooooodddd:	chr4:83748546-83748768(-)$1	222	89	105	11.7791
eeeeeooooooeeeee	chr8:145066770-145067001(+)$1	231	105	121	11.0090
eeeeeooooooeeeee	chr9:33941632-33941918(-)$1	286	163	179	11.0090
"ddddooooooddddc	chrX:135047096-135047358(-)$1	262	103	119	12.9847
:ddddoooooodddd:	chr10:28905002-28905358(+)$1	356	131	147	11.7791
[ddddoooooodddd]	chr5:137726797-137727057(+)$1	260	173	189	13.2261
c[cccooooooccccc	chr12:57107220-57107422(-)$1	202	117	133	10.4868
$ddddoooooodddd6	chr16:11935663-11935958(-)$1	295	249	265	12.6409
&ddddoooooodddd8	chr11:45986779-45987127(-)$1	348	239	255	12.3221
##cccooooooccc22	chr12:53856165-53856374(+)$1	209	146	162	10.6116
eeeeeooooooeeeee	chr1:52237643-52237953(+)$1	310	236	252	11.0090
[ddddooooooddddd	chr11:34112092-34112326(+)$1	234	141	157	12.8568
d[cccooooooccc]d	chr3:155632122-155632413(+)$1	291	27	43	10.2622
%ddddoooooodddd>	chr6:30672797-30673083(-)$1	286	134	150	12.5870
:ddddoooooodddd:	chr21:38850407-38850657(+)$1	250	40	56	11.7791
:ddddooooooddddF	chr6:31807223-31807484(+)$1	261	3	19	11.9158
"ddddoooooodddd2	chr17:60112723-60113034(-)$1	311	221	237	13.1730
b[cccooooooccc]b	chr1:51204451-51204692(-)$1	241	140	156	10.1464
!ddddoooooodddd]	chr4:119718735-119719062(-)$1	327	208	224	13.2988
!ddddoooooodddd3	chr11:118472333-118472579(+)$1	246	213	229	13.3198
[ddddooooooddddb	chr9:134073827-134074071(+)$1	244	99	115	12.7577
eeeeeooooooeeeee	chr9:114994320-114994586(-)$1	266	222	238	11.0090
""cccooooooccc33	chr15:66792610-66792814(-)$1	204	178	194	10.9337
!ddddoooooodddd2	chr5:37305074-37305357(-)$1	283	32	48	13.1895
:ddddoooooodddd:	chr4:83748594-83748875(-)$1	281	196	212	11.7791
eeeeeooooooeeeee	chr20:35858316-35858551(+)$1	235	187	203	11.0090
ffcccooooooccc]f	chr1:19503995-19504216(-)$1	221	157	173	9.9964
Eddddoooooodddd:	chr9:114993566-114993793(-)$1	227	18	34	11.5863
eeeeeooooooeeeee	chr1:241797858-241798172(-)$1	314	236	252	11.0090
cddddoooooodddd]	chr1:52226271-52226553(+)$1	282	49	65	13.0023
eeeeeooooooeeeee	chr4:56236134-56236485(+)$1	351	62	78	11.0090
:ddddoooooodddd:	chr1:47155161-47155451(-)$1	290	112	128	11.7791
:ddddoooooodddd:	chr3:169847067-169847414(-)$1	347	316	332	11.7791
ddcccoooooocccee	chr1:205683414-205683714(-)$1	300	206	222	10.8658
eeeeeooooooeeeee	chr1:114510993-114511243(+)$1	250	222	238	11.0090
eeeeeooooooeeeee	chr12:56669728-56670050(-)$1	322	211	227	11.0090

#otherMatches

#Seq PSSM
CCAUGAGUGCACGUGC	chr3:52028009-52028243(-)$1	234	189	205	10.4868
AGAUGUCAUGGUAUGU	chr8:97299163-97299423(+)$1	260	201	217	10.6870
ACUUUGCUUCUGAAGG	chr3:48788658-48788985(-)$1	327	160	176	11.7406
ACAGAUGCACCUCUGA	chr1:185089123-185089393(-)$1	270	69	85	13.0023
CUGGCGAGUCGGCCAU	chr6:7229566-7229865(+)$1	299	144	160	13.1895
AUUGUCCUCCUGCAGU	chr7:105739503-105739715(-)$1	212	51	67	13.0007
GGACAAUGAGAUGUCC	chr2:20885283-20885596(-)$1	313	211	227	11.0090
CCGGAACAAGCUCUGC	chr16:28187167-28187448(-)$1	281	142	158	13.2824
UAAUUUUUUUUAAUUA	chr2:177191451-177191723(+)$1	272	27	43	11.0090
ACUGUUACCACGCAAA	chr16:2816440-2816668(+)$1	228	193	209	10.6116
GGCCCCACCUUGGGCA	chr12:49433747-49434057(-)$1	310	209	225	13.1730
CCUGGGGACCACCAGC	chr14:55529887-55530141(+)$1	254	22	38	12.2550
CAGCAAUUUCCUGCUC	chr21:38884196-38884509(+)$1	313	23	39	11.7791
UUCAGCAGAGUCUGAU	chr12:49426624-49426907(-)$1	283	46	62	13.2261
CCAGGUCUCCUCCUGU	chr9:115337192-115337483(+)$1	291	211	227	12.2806
CAGCUCAGUGCAGCUG	chr12:56676106-56676373(-)$1	267	80	96	11.0090
CGCCCGCCUGUGGGCC	chr14:105930266-105930575(+)$1	309	251	267	13.2988
CCACCUCACCUGGUAA	chr17:1584122-1584354(-)$1	232	120	136	10.3897
ACCAGCUUUACCUGGC	chr7:151878148-151878396(-)$1	248	225	241	13.2261
AAUCACUUAGAUGAUG	chr9:114989590-114989809(-)$1	219	140	156	13.2261
GUUUCACAAAAGAAGC	chr13:45914028-45914244(-)$1	216	67	83	11.0090
GUAGCUUGCUCGCUCU	chr1:205589026-205589349(-)$1	323	256	272	10.4868
CCCAUUAAGAUAUGGC	chrX:77160611-77160919(+)$1	308	220	236	12.1368
CACUGUCAAGCCAGUC	chr4:83748546-83748768(-)$1	222	89	105	11.7791
CCCAGCUGCUACUGGG	chr8:145066770-145067001(+)$1	231	105	121	11.0090
UGCUAGUCCAGUAGCA	chr9:33941632-33941918(-)$1	286	163	179	11.0090
UUCUUCAAACCAAGAU	chrX:135047096-135047358(-)$1	262	103	119	12.9847
AUACUUCUAAUAGUAG	chr10:28905002-28905358(+)$1	356	131	147	11.7791
UUCUUCUAGUCGGGAC	chr5:137726797-137727057(+)$1	260	173	189	13.2261
UUGGGCAUUGUUCCAG	chr12:57107220-57107422(-)$1	202	117	133	10.4868
UGUAGACGAUGUUACU	chr16:11935663-11935958(-)$1	295	249	265	12.6409
GCAAGCCAAGUCUUGA	chr11:45986779-45987127(-)$1	348	239	255	12.3221
CAAGCCGUCCAGCUCU	chr12:53856165-53856374(+)$1	209	146	162	10.6116
UUUUUUUCUUUAAAAA	chr1:52237643-52237953(+)$1	310	236	252	11.0090
AUUAACUAACAUUAAU	chr11:34112092-34112326(+)$1	234	141	157	12.8568
UAUUUUUGAUUAAAAA	chr3:155632122-155632413(+)$1	291	27	43	10.2622
CACAGACCAACCUGUC	chr6:30672797-30673083(-)$1	286	134	150	12.5870
AUAGUUAAAGUGCUAG	chr21:38850407-38850657(+)$1	250	40	56	11.7791
ugugguugcauccaug	chr6:31807223-31807484(+)$1	261	3	19	11.9158
UUAUUAUAUUAGGUAU	chr17:60112723-60113034(-)$1	311	221	237	13.1730
AUCAUCUAGUCAUGCU	chr1:51204451-51204692(-)$1	241	140	156	10.1464
CCAUUCCUUCAAAUGA	chr4:119718735-119719062(-)$1	327	208	224	13.2988
UGUCCAGUUAGGGAUU	chr11:118472333-118472579(+)$1	246	213	229	13.3198
ACCAAGUCUGUUUGGG	chr9:134073827-134074071(+)$1	244	99	115	12.7577
AUUAUAUGUAAAUAGU	chr9:114994320-114994586(-)$1	266	222	238	11.0090
ACCACGGUAAAGUGAU	chr15:66792610-66792814(-)$1	204	178	194	10.9337
CAUUUUCUUUCAGAUU	chr5:37305074-37305357(-)$1	283	32	48	13.1895
CACUGUCAAGCCAGUC	chr4:83748594-83748875(-)$1	281	196	212	11.7791
AGGGCAACAAAGCCCU	chr20:35858316-35858551(+)$1	235	187	203	11.0090
GAUGCUCAGAUGCGCU	chr1:19503995-19504216(-)$1	221	157	173	9.9964
AACUGCCAUUACAGUA	chr9:114993566-114993793(-)$1	227	18	34	11.5863
CCUUGUAUGGCCAAGG	chr1:241797858-241798172(-)$1	314	236	252	11.0090
CAUUUAAUUAAAAAUA	chr1:52226271-52226553(+)$1	282	49	65	13.0023
ACAAAAGCAAAUUUGU	chr4:56236134-56236485(+)$1	351	62	78	11.0090
CCUGGAAGCAACCAGA	chr1:47155161-47155451(-)$1	290	112	128	11.7791
CAGAGUCAUCCCUCUC	chr3:169847067-169847414(-)$1	347	316	332	11.7791
AUGCUUUGUGUGGCUG	chr1:205683414-205683714(-)$1	300	206	222	10.8658
UCACUAUCCGAAGUGA	chr1:114510993-114511243(+)$1	250	222	238	11.0090
GUUAGGCUAUACUGAU	chr12:56669728-56670050(-)$1	322	211	227	11.0090

#DB
(.(((......)))))	chr3:52028009-52028243(-)$1	1	189	205	10.4868
(.(((......))).)	chr8:97299163-97299423(+)$1	1	201	217	10.6870
.((((......)))))	chr3:48788658-48788985(-)$1	1	160	176	11.7406
(((((......)))).	chr1:185089123-185089393(-)$1	1	69	85	13.0023
.((((......)))).	chr6:7229566-7229865(+)$1	1	144	160	13.1895
.((((......)))))	chr7:105739503-105739715(-)$1	1	51	67	13.0007
(((((......)))))	chr2:20885283-20885596(-)$1	1	211	227	11.0090
.((((......)))).	chr16:28187167-28187448(-)$1	1	142	158	13.2824
(((((......)))))	chr2:177191451-177191723(+)$1	1	27	43	11.0090
..(((......)))..	chr16:2816440-2816668(+)$1	1	193	209	10.6116
.((((......)))).	chr12:49433747-49434057(-)$1	1	209	225	13.1730
)((((......)))).	chr14:55529887-55530141(+)$1	1	22	38	12.2550
.((((......)))).	chr21:38884196-38884509(+)$1	1	23	39	11.7791
.((((......)))).	chr12:49426624-49426907(-)$1	1	46	62	13.2261
.((((......))))(	chr9:115337192-115337483(+)$1	1	211	227	12.2806
(((((......)))))	chr12:56676106-56676373(-)$1	1	80	96	11.0090
.((((......)))).	chr14:105930266-105930575(+)$1	1	251	267	13.2988
(((((......)))..	chr17:1584122-1584354(-)$1	1	120	136	10.3897
.((((......)))).	chr7:151878148-151878396(-)$1	1	225	241	13.2261
.((((......)))).	chr9:114989590-114989809(-)$1	1	140	156	13.2261
(((((......)))))	chr13:45914028-45914244(-)$1	1	67	83	11.0090
(.(((......)))))	chr1:205589026-205589349(-)$1	1	256	272	10.4868
.((((......))))(	chrX:77160611-77160919(+)$1	1	220	236	12.1368
.((((......)))).	chr4:83748546-83748768(-)$1	1	89	105	11.7791
(((((......)))))	chr8:145066770-145067001(+)$1	1	105	121	11.0090
(((((......)))))	chr9:33941632-33941918(-)$1	1	163	179	11.0090
.((((......)))))	chrX:135047096-135047358(-)$1	1	103	119	12.9847
.((((......)))).	chr10:28905002-28905358(+)$1	1	131	147	11.7791
.((((......)))).	chr5:137726797-137727057(+)$1	1	173	189	13.2261
(.(((......)))))	chr12:57107220-57107422(-)$1	1	117	133	10.4868
.((((......)))).	chr16:11935663-11935958(-)$1	1	249	265	12.6409
.((((......)))).	chr11:45986779-45987127(-)$1	1	239	255	12.3221
..(((......)))..	chr12:53856165-53856374(+)$1	1	146	162	10.6116
(((((......)))))	chr1:52237643-52237953(+)$1	1	236	252	11.0090
.((((......)))))	chr11:34112092-34112326(+)$1	1	141	157	12.8568
(.(((......))).)	chr3:155632122-155632413(+)$1	1	27	43	10.2622
.((((......)))).	chr6:30672797-30673083(-)$1	1	134	150	12.5870
.((((......)))).	chr21:38850407-38850657(+)$1	1	40	56	11.7791
.((((......))))(	chr6:31807223-31807484(+)$1	1	3	19	11.9158
.((((......)))).	chr17:60112723-60113034(-)$1	1	221	237	13.1730
(.(((......))).)	chr1:51204451-51204692(-)$1	1	140	156	10.1464
.((((......)))).	chr4:119718735-119719062(-)$1	1	208	224	13.2988
.((((......)))).	chr11:118472333-118472579(+)$1	1	213	229	13.3198
.((((......)))))	chr9:134073827-134074071(+)$1	1	99	115	12.7577
(((((......)))))	chr9:114994320-114994586(-)$1	1	222	238	11.0090
..(((......)))..	chr15:66792610-66792814(-)$1	1	178	194	10.9337
.((((......)))).	chr5:37305074-37305357(-)$1	1	32	48	13.1895
.((((......)))).	chr4:83748594-83748875(-)$1	1	196	212	11.7791
(((((......)))))	chr20:35858316-35858551(+)$1	1	187	203	11.0090
(((((......))).)	chr1:19503995-19504216(-)$1	1	157	173	9.9964
(((((......)))).	chr9:114993566-114993793(-)$1	1	18	34	11.5863
(((((......)))))	chr1:241797858-241798172(-)$1	1	236	252	11.0090
(((((......)))).	chr1:52226271-52226553(+)$1	1	49	65	13.0023
(((((......)))))	chr4:56236134-56236485(+)$1	1	62	78	11.0090
.((((......)))).	chr1:47155161-47155451(-)$1	1	112	128	11.7791
.((((......)))).	chr3:169847067-169847414(-)$1	1	316	332	11.7791
))(((......)))((	chr1:205683414-205683714(-)$1	1	206	222	10.8658
(((((......)))))	chr1:114510993-114511243(+)$1	1	222	238	11.0090
(((((......)))))	chr12:56669728-56670050(-)$1	1	211	227	11.0090

#PSSM
e : 0.23	: : 0.18	[ : 0.11	c : 0.10	! : 0.08	" : 0.08	# : 0.03	d : 0.03	a : 0.01	$ : 0.01	& : 0.01	% : 0.01	b : 0.01	f : 0.01	E : 0.01	
d : 0.59	e : 0.22	[ : 0.10	# : 0.03	a : 0.01	" : 0.01	f : 0.01	
d : 0.57	e : 0.22	c : 0.20	
d : 0.57	e : 0.22	c : 0.20	
d : 0.57	e : 0.22	c : 0.20	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
d : 0.57	e : 0.22	c : 0.20	
d : 0.57	e : 0.22	c : 0.20	
d : 0.57	e : 0.22	c : 0.20	
d : 0.57	e : 0.23	] : 0.06	c : 0.05	2 : 0.05	3 : 0.01	
e : 0.27	] : 0.15	: : 0.15	2 : 0.11	c : 0.06	d : 0.05	b : 0.03	3 : 0.03	a : 0.01	H : 0.01	6 : 0.01	8 : 0.01	> : 0.01	F : 0.01	f : 0.01	

#score	697.4360954692874
#seq	59
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_transcript_m2_run2.txt

#BEAR
cc!!bb!!ccc[bboooooobb22ccc22bb22	chr15:75687032-75687308(-)$1	276	203	236	12.3036
"ccc!!a"""cccooooooccca22ccc]ffff	chr3:23848623-23849009(+)$1	386	240	273	15.1512
ggbbccc"""bb[ccclllccc333bb333ccc	chr10:103558688-103558957(-)$1	269	49	82	11.2942
eeeeeeeee!!bboooooobb22eeeee22eee	chr12:39735205-39735517(-)$1	312	82	115	12.3037
=========ddddoooooodddd::eeeeeooo	chr2:242179429-242179636(-)$1	207	160	193	11.0943
c[bb"""eeeeeooooooeeeee22bb]ccc22	chr1:17913926-17914175(+)$1	249	9	42	10.7592
eeee[ccc!!cccoooooocccccceeeee22f	chr1:93307222-93307428(+)$1	206	97	130	13.3253
##ccc[ccc[a[cccmmmmccc]a]cccccc33	chr16:57803688-57803958(-)$1	270	92	125	11.0723
========!!assssssssssa22=========	chr12:49448995-49449244(-)$1	249	27	60	12.0372
h[bbiiiiiiiiiooooooiiiiiiiii>>>>>	chr1:25553840-25554123(-)$1	283	26	59	12.9000
b]ccc]ddddcccooooooccc:dddd[ccca[	chr13:46543330-46543637(-)$1	307	166	199	10.7477
ggggggg[ccc[cccmmmmccc]ccc22ggggg	chr8:98699687-98699930(+)$1	243	172	205	10.5494
iiiiii[cccrrrrrrrrrccc22iiiiiiiii	chr14:75283185-75283441(+)$1	256	66	99	12.3884
""eeeeecccrrrrrrrrrccc22eeeee]ccc	chr16:74957721-74957965(-)$1	244	89	122	10.6661
fffff[ccc"""bbnnnnnbb333ccc]fffff	chr14:21967331-21967654(-)$1	323	139	172	11.2426
b[eeeee[ccc[bboooooobbccc]eeeee]b	chr2:85838461-85838794(-)$1	333	223	256	11.2761
ffffffgggggggooooooggggggg]ffffff	chr21:35107286-35107613(+)$1	327	33	66	12.2556
iiiccc!!ddddoooooodddd22ccc]iiiii	chr6:76419209-76419445(+)$1	236	141	174	13.9683
ii[ccc"""ddddoooooodddd]ccc]iiiii	chr16:88666160-88666457(+)$1	297	237	270	14.1934
F:===========oooooo===========:::	chr2:242179083-242179334(-)$1	251	27	60	11.4502
"""ffffff"""aooooooa333ffffff]eee	chr12:30887845-30888116(-)$1	271	171	204	13.6754
c[ccc[ccc!!ddddllldddd22ccc]ccc]c	chr2:21225969-21226174(-)$1	205	115	148	11.8269
b[ffffffbb[bboooooobb]bb]ffffff]b	chr7:2262246-2262488(-)$1	242	117	150	11.4338
=======[bb!!cccmmmmccc22bb]======	chr19:1011825-1012049(-)$1	224	181	214	12.3302
eee[ccc[bb[bboooooobbbbccceeeeeff	chr12:114282473-114282693(-)$1	220	113	146	11.8936
cccdddda!!cccooooooccc22a]dddd]cc	chr1:33122926-33123193(+)$1	267	33	66	14.0569
fffffbb!!ddddoooooodddd22bb]fffff	chr2:197654527-197654828(-)$1	301	223	256	11.9004
e[ccc[ccceeeeellleeeee22ccc]ccc]e	chr12:6879232-6879469(+)$1	237	161	194	9.9918
ffffiiiiiiiiiooooooiiiiiiiii66666	chr1:46072053-46072262(+)$1	209	84	117	11.6741
iiiiiiiii!!ddddllldddd22iiiiiiiii	chr8:124392743-124392995(-)$1	252	67	100	12.5376
i"""eeeee[cccnnnnnccc333eeeee]iii	chr8:98703078-98703325(+)$1	247	107	140	12.0617
"""==========bbnnnnnbb22=========	chr12:7026648-7026909(+)$1	261	143	176	12.1078
iiiiiiii[ddddoooooodddd]iiiiiiiii	chr1:235394338-235394587(-)$1	249	213	246	14.3902
a$$$$$gggggggooooooggggggg4444a]e	chr19:40741068-40741310(-)$1	242	134	167	12.8423
d####bb[a!!bboooooobb22a]bb333ddd	chr8:22106653-22106917(+)$1	264	216	249	13.9182
===========ssssssssss============	chr17:7125930-7126152(+)$1	222	107	140	10.9045
ccc[bb[ccccccooooooccc]ccc]bb]ccc	chr16:8895574-8895832(+)$1	258	78	111	13.6824
ddd[eeeeeddddoooooodddd333eeeee]d	chr19:15379678-15379941(-)$1	263	20	53	12.2232
ggggg"""bb[bboooooobb]bbgggggggee	chr6:160208687-160208925(-)$1	238	95	128	12.9248
========!!cccnnnnnccc4444========	chrX:40988165-40988452(+)$1	287	35	68	13.7820
b[ggggggg[cccooooooccc22gggggggbb	chr5:154179061-154179285(+)$1	224	139	172	15.6355
ddda"""bb[cccooooooccc]bb333a]ddd	chr10:106019337-106019645(+)$1	308	88	121	13.4747
"""ffffff!!bboooooobb]ffffff4444e	chr14:103871318-103871704(+)$1	386	237	270	13.0170
b####gggggggooooooggggggg>>>>>>>>	chr8:120844644-120844997(-)$1	353	242	275	10.6325
####eeeee"""cccmmmmccc22eeeeeffff	chr16:23453738-23454005(-)$1	267	50	83	10.6561
gggg!!ccc!!cccnnnnnccc22cccgggggg	chr4:10118201-10118505(-)$1	304	135	168	13.1013
eeeee!!bb!!bboooooobb22bb4444eeee	chr22:21083491-21083744(-)$1	253	68	101	12.8808
[dddd!!bb[cccooooooccc333bb22dddd	chr14:24033669-24033874(-)$1	205	18	51	13.8055
iiiii"""ddddoooooodddd22iiiiiiiii	chr14:24687237-24687460(-)$1	223	183	216	14.3102
bbeeeee####bboooooobb333eeeee:::b	chr16:30775542-30775773(+)$1	231	30	63	10.9397
==========cccmmmmccc]===========:	chr20:2634992-2635203(+)$1	211	3	36	10.8287
ddd[ffffffcccooooooccc22ffffffddd	chr2:44055027-44055285(-)$1	258	38	71	13.2492
cccccc####cccooooooccc4444ccc]ccc	chr16:3721637-3721864(-)$1	227	115	148	15.2118
bb"""dddd[cccooooooccc]dddd333bb]	chr8:145669169-145669446(-)$1	277	28	61	13.2241
iiiiiiii"""cccnnnnnccc]iiiiiiiii:	chr17:62499264-62499486(-)$1	222	61	94	12.2031

#otherMatches

#Seq PSSM
CCAGGGGAUCAACUUUAAACAGAAUGACACCAA	chr15:75687032-75687308(-)$1	276	203	236	12.3036
AAGUCAGCAUGAGCAAAAACUCCAAACUCCUCU	chr3:23848623-23849009(+)$1	386	240	273	15.1512
CACUGAUAAAGAGAGCAUAGCUGAAUCAAAAUC	chr10:103558688-103558957(-)$1	269	49	82	11.2942
UCACAUUUUAGGAAGAAAGUCAAGAAGUGAGUG	chr12:39735205-39735517(-)$1	312	82	115	12.3037
GCAAGGGGGGCGGCAAAAUUCGCAAGGUGCGCG	chr2:242179429-242179636(-)$1	207	160	193	11.0943
AACUCCUUCUCUCUUCCAGGAGAUCAGCUGGUU	chr1:17913926-17914175(+)$1	249	9	42	10.7592
UAGGUGGAACCGUCCCAAAAUGUCCCUUGCUCA	chr1:93307222-93307428(+)$1	206	97	130	13.3253
UUGCCAUGUACGAGUCAGAGCUGGAGCGGGCCC	chr16:57803688-57803958(-)$1	270	92	125	11.0723
UCCCAGGAUUCUGGGAAAAAUGCUUCUUGGGAA	chr12:49448995-49449244(-)$1	249	27	60	12.0372
UUUAGAUUUUUCUCUCAAUAGGAAGGUCCAAAC	chr1:25553840-25554123(-)$1	283	26	59	12.9000
GAGGAUGUCCCUGACCGUACAGAGGUGACAGAA	chr13:46543330-46543637(-)$1	307	166	199	10.7477
GUACAUCAAAUCAAACUCCUUUUAUUCGGAUGU	chr8:98699687-98699930(+)$1	243	172	205	10.5494
UUCUUGACUGUAUGAUUCUUAGGAUAAGGAGGU	chr14:75283185-75283441(+)$1	256	66	99	12.3884
AAUACCUCAAUAUUCUUCCUUGCCAGGUGCCUG	chr16:74957721-74957965(-)$1	244	89	122	10.6661
GUUGGUGUCAAAGGAAAUCCCCAAGGCUUCAAC	chr14:21967331-21967654(-)$1	323	139	172	11.2426
GGGAGCCAGCAAGAAGUUUAUCUGCCGGUUUGC	chr2:85838461-85838794(-)$1	333	223	256	11.2761
UGUUCUCAGGCCAUGCUGUUGGUUUGCAGGGCA	chr21:35107286-35107613(+)$1	327	33	66	12.2556
AACUUAAUGCUUGGCAAAAAGUUCUAAUGUUUU	chr6:76419209-76419445(+)$1	236	141	174	13.9683
UGCGGCCACGCUCCGGAGAGAGCAGCCAUGUGC	chr16:88666160-88666457(+)$1	297	237	270	14.1934
CGGGCCUCGGCGGCCGACUCUGCUGGGGCCGUG	chr2:242179083-242179334(-)$1	251	27	60	11.4502
AAGUUUUCAAAACUGACCUGCCCUGAAAGAAAU	chr12:30887845-30888116(-)$1	271	171	204	13.6754
GGGGUCCUUUAUGAUUAUGUCAACAAGUACCAC	chr2:21225969-21226174(-)$1	205	115	148	11.8269
CAGGAGCUCCUGACGCGCAUCCGGCAGCUUCAG	chr7:2262246-2262488(-)$1	242	117	150	11.4338
GGGGGCUGGCCGGGCGGGAGCCAAGCAGGCCCU	chr19:1011825-1012049(-)$1	224	181	214	12.3302
CCCUGUGUCACAGCACCCACUUGUACGGGCGGA	chr12:114282473-114282693(-)$1	220	113	146	11.8936
GUAUAUUGUUGACUUCGCCGUCUCCUGAUGUUA	chr1:33122926-33123193(+)$1	267	33	66	14.0569
AAGGuaauuaaaauuuuuuuuuuuuuuCACUUU	chr2:197654527-197654828(-)$1	301	223	256	11.9004
GGGUUGCUGGGCCUGAGGGGCUGUCAGGGAUGC	chr12:6879232-6879469(+)$1	237	161	194	9.9918
UCUUUUGUUCUCCUAGAAUGGAGAAUGGUGUGU	chr1:46072053-46072262(+)$1	209	84	117	11.6741
UUUUCUUAAAGGAUGGGUCAUCAGUUAAGGAAG	chr8:124392743-124392995(-)$1	252	67	100	12.5376
CAGGAUUGAAUGAAAACCUCACUGUCAAUGGAG	chr8:98703078-98703325(+)$1	247	107	140	12.0617
AAGGCAGGGGCAGCUGAGCGGGAACUGCCCCUG	chr12:7026648-7026909(+)$1	261	143	176	12.1078
UUUGAAGAUUAAAUUUUUCUUUGCUCUUUAAAA	chr1:235394338-235394587(-)$1	249	213	246	14.3902
GAAGAAGGUGAGCCCCACUGCUUGCCCCAGCAG	chr19:40741068-40741310(-)$1	242	134	167	12.8423
GGAAGUGGUGACCUGUAGUGGGAAGCAAAGCCG	chr8:22106653-22106917(+)$1	264	216	249	13.9182
UUCUUUGAUGGAGUACGGGUGCCAUCGGAGAAC	chr17:7125930-7126152(+)$1	222	107	140	10.9045
UAGAAAAUUACCAAAGAAAUGGAUGACUUCCUA	chr16:8895574-8895832(+)$1	258	78	111	13.6824
UGGCCAGCCCAGCGUUUGUGCUGCCUGGCUGCC	chr19:15379678-15379941(-)$1	263	20	53	12.2232
UUUGUGAGCUGGCUGAUCUGCAAGACAAAGAAG	chr6:160208687-160208925(-)$1	238	95	128	12.9248
UUUUACAUAUGUUAUAGAAACUUAAAUGUGGAA	chrX:40988165-40988452(+)$1	287	35	68	13.7820
GAGGGAGGAACCAGAAAAGUGGCCUCUUCCCCC	chr5:154179061-154179285(+)$1	224	139	172	15.6355
AGGGUCAGCUGAUCUACGAGUCUGCCAUCACCU	chr10:106019337-106019645(+)$1	308	88	121	13.4747
GAAUUUUGCAAAAGUAAAAUUGGCAAGACAUAU	chr14:103871318-103871704(+)$1	386	237	270	13.0170
ACAAGGGCUUUGAAAGCCCAAGGCCAUAUAAAU	chr8:120844644-120844997(-)$1	353	242	275	10.6325
GAUUUCUGCCAAGCUAACAGGUAUGCAGAACAG	chr16:23453738-23454005(-)$1	267	50	83	10.6561
GCCUCGGCGAGGUGUAAUUCGCAGCGCGGGCCG	chr4:10118201-10118505(-)$1	304	135	168	13.1013
GUGAGAAGCAGUGGAAGGACAACGUGAACCUCG	chr22:21083491-21083744(-)$1	253	68	101	12.8808
CGGACACCAGCCGAAAUGCCGGAAAUGCGGUCC	chr14:24033669-24033874(-)$1	205	18	51	13.8055
GGCACGUACUGAGGUGGAUcaggggugccucuu	chr14:24687237-24687460(-)$1	223	183	216	14.3102
CAGCAGUGAGGAGGUGGAGCUGGAGCUGCAAGG	chr16:30775542-30775773(+)$1	231	30	63	10.9397
CUGAGGGAUGUUAGAGUUGAUCGUCCUUCAGCC	chr20:2634992-2635203(+)$1	211	3	36	10.8287
CCGUCAUGGCAGAGCUGAGUCUGAGCCAUGUGG	chr2:44055027-44055285(-)$1	258	38	71	13.2492
GCUGCUGCAGGAGAGCGCACUCAUCAGGUGAGC	chr16:3721637-3721864(-)$1	227	115	148	15.2118
CCCCCGCCUAGGCCGCUACGCCGAGGCUCUGGA	chr8:145669169-145669446(-)$1	277	28	61	13.2241
UUUUUAGAGUGUGGAAAAACCAAUCUGAGAAGA	chr17:62499264-62499486(-)$1	222	61	94	12.2031

#DB
((..((..(((.((......))..)))..))..	chr15:75687032-75687308(-)$1	1	203	236	12.3036
.(((..(...(((......))))..))).))))	chr3:23848623-23849009(+)$1	1	240	273	15.1512
(((((((...((.(((...)))...))...)))	chr10:103558688-103558957(-)$1	1	49	82	11.2942
(((((((((..((......))..)))))..)))	chr12:39735205-39735517(-)$1	1	82	115	12.3037
)))))))))((((......))))..(((((...	chr2:242179429-242179636(-)$1	1	160	193	11.0943
(.((...(((((......)))))..)).)))..	chr1:17913926-17914175(+)$1	1	9	42	10.7592
((((.(((..(((......)))))))))))..)	chr1:93307222-93307428(+)$1	1	97	130	13.3253
..(((.(((.(.(((....))).).))))))..	chr16:57803688-57803958(-)$1	1	92	125	11.0723
((((((((..(..........)..)))))))))	chr12:49448995-49449244(-)$1	1	27	60	12.0372
(.(((((((((((......))))))))).....	chr1:25553840-25554123(-)$1	1	26	59	12.9000
).))).))))(((......))).((((.((((.	chr13:46543330-46543637(-)$1	1	166	199	10.7477
(((((((.(((.(((....))).)))..)))))	chr8:98699687-98699930(+)$1	1	172	205	10.5494
((((((.(((.........)))..)))))))))	chr14:75283185-75283441(+)$1	1	66	99	12.3884
..((((((((.........)))..))))).)))	chr16:74957721-74957965(-)$1	1	89	122	10.6661
(((((.(((...((.....))...))).)))))	chr14:21967331-21967654(-)$1	1	139	172	11.2426
(.(((((.(((.((......))))).))))).)	chr2:85838461-85838794(-)$1	1	223	256	11.2761
(((((((((((((......))))))).))))))	chr21:35107286-35107613(+)$1	1	33	66	12.2556
((((((..((((......))))..))).)))))	chr6:76419209-76419445(+)$1	1	141	174	13.9683
((.(((...((((......)))).))).)))))	chr16:88666160-88666457(+)$1	1	237	270	14.1934
(.(((((((((((......)))))))))))...	chr2:242179083-242179334(-)$1	1	27	60	11.4502
...((((((...(......)...)))))).)))	chr12:30887845-30888116(-)$1	1	171	204	13.6754
(.(((.(((..((((...))))..))).))).)	chr2:21225969-21226174(-)$1	1	115	148	11.8269
(.((((((((.((......)).)).)))))).)	chr7:2262246-2262488(-)$1	1	117	150	11.4338
(((((((.((..(((....)))..)).))))))	chr19:1011825-1012049(-)$1	1	181	214	12.3302
(((.(((.((.((......))))))))))))))	chr12:114282473-114282693(-)$1	1	113	146	11.8936
((((((((..(((......)))..).)))).))	chr1:33122926-33123193(+)$1	1	33	66	14.0569
(((((((..((((......))))..)).)))))	chr2:197654527-197654828(-)$1	1	223	256	11.9004
(.(((.((((((((...)))))..))).))).)	chr12:6879232-6879469(+)$1	1	161	194	9.9918
(((((((((((((......))))))))).....	chr1:46072053-46072262(+)$1	1	84	117	11.6741
(((((((((..((((...))))..)))))))))	chr8:124392743-124392995(-)$1	1	67	100	12.5376
(...(((((.(((.....)))...))))).)))	chr8:98703078-98703325(+)$1	1	107	140	12.0617
...((((((((((((.....))..)))))))))	chr12:7026648-7026909(+)$1	1	143	176	12.1078
((((((((.((((......)))).)))))))))	chr1:235394338-235394587(-)$1	1	213	246	14.3902
(.....(((((((......)))))))....).)	chr19:40741068-40741310(-)$1	1	134	167	12.8423
(....((.(..((......))..).))...)))	chr8:22106653-22106917(+)$1	1	216	249	13.9182
(((((((((((..........))))))))))))	chr17:7125930-7126152(+)$1	1	107	140	10.9045
(((.((.((((((......))).))).)).)))	chr16:8895574-8895832(+)$1	1	78	111	13.6824
(((.(((((((((......))))...))))).)	chr19:15379678-15379941(-)$1	1	20	53	12.2232
(((((...((.((......)).)))))))))))	chr6:160208687-160208925(-)$1	1	95	128	12.9248
((((((((..(((.....)))....))))))))	chrX:40988165-40988452(+)$1	1	35	68	13.7820
(.(((((((.(((......)))..)))))))))	chr5:154179061-154179285(+)$1	1	139	172	15.6355
((((...((.(((......))).))...).)))	chr10:106019337-106019645(+)$1	1	88	121	13.4747
...((((((..((......)).))))))....)	chr14:103871318-103871704(+)$1	1	237	270	13.0170
(....(((((((......)))))))........	chr8:120844644-120844997(-)$1	1	242	275	10.6325
....(((((...(((....)))..)))))))))	chr16:23453738-23454005(-)$1	1	50	83	10.6561
((((..(((..(((.....)))..)))))))))	chr4:10118201-10118505(-)$1	1	135	168	13.1013
(((((..((..((......))..))....))))	chr22:21083491-21083744(-)$1	1	68	101	12.8808
.((((..((.(((......)))...))..))))	chr14:24033669-24033874(-)$1	1	18	51	13.8055
(((((...((((......))))..)))))))))	chr14:24687237-24687460(-)$1	1	183	216	14.3102
))(((((....((......))...)))))...(	chr16:30775542-30775773(+)$1	1	30	63	10.9397
(((((((((((((....))).))))))))))).	chr20:2634992-2635203(+)$1	1	3	36	10.8287
(((.(((((((((......)))..)))))))))	chr2:44055027-44055285(-)$1	1	38	71	13.2492
((((((....(((......)))....))).)))	chr16:3721637-3721864(-)$1	1	115	148	15.2118
((...((((.(((......))).))))...)).	chr8:145669169-145669446(-)$1	1	28	61	13.2241
((((((((...(((.....))).))))))))).	chr17:62499264-62499486(-)$1	1	61	94	12.2031

#PSSM
i : 0.14	b : 0.12	c : 0.10	= : 0.10	" : 0.09	e : 0.09	g : 0.07	f : 0.07	d : 0.07	# : 0.03	h : 0.01	F : 0.01	a : 0.01	[ : 0.01	
[ : 0.12	i : 0.12	= : 0.10	c : 0.09	" : 0.09	g : 0.07	e : 0.07	# : 0.07	f : 0.07	d : 0.07	b : 0.03	] : 0.01	: : 0.01	$ : 0.01	
c : 0.14	e : 0.12	= : 0.12	i : 0.10	f : 0.09	" : 0.09	g : 0.07	d : 0.07	b : 0.05	# : 0.05	! : 0.01	[ : 0.01	$ : 0.01	
c : 0.14	= : 0.14	f : 0.12	e : 0.10	i : 0.09	g : 0.07	[ : 0.07	b : 0.05	# : 0.05	d : 0.03	" : 0.03	! : 0.01	$ : 0.01	a : 0.01	
c : 0.16	e : 0.14	= : 0.14	i : 0.12	f : 0.12	" : 0.05	g : 0.05	b : 0.03	! : 0.03	d : 0.03	# : 0.03	[ : 0.01	$ : 0.01	
= : 0.14	e : 0.12	c : 0.10	i : 0.10	f : 0.09	b : 0.07	! : 0.07	" : 0.07	[ : 0.07	g : 0.05	d : 0.03	] : 0.01	$ : 0.01	
c : 0.14	= : 0.14	e : 0.12	" : 0.09	i : 0.09	g : 0.09	! : 0.07	f : 0.07	d : 0.05	[ : 0.03	b : 0.03	a : 0.01	# : 0.01	
c : 0.16	= : 0.12	" : 0.09	e : 0.09	i : 0.09	[ : 0.09	g : 0.07	f : 0.07	! : 0.05	b : 0.05	d : 0.03	# : 0.03	a : 0.01	
c : 0.20	b : 0.12	e : 0.09	= : 0.09	! : 0.09	" : 0.07	d : 0.07	g : 0.07	i : 0.05	f : 0.05	# : 0.03	[ : 0.01	a : 0.01	
! : 0.20	d : 0.14	c : 0.10	" : 0.10	[ : 0.10	= : 0.07	b : 0.07	g : 0.05	e : 0.03	i : 0.03	# : 0.03	f : 0.01	
c : 0.30	! : 0.14	d : 0.12	" : 0.07	g : 0.05	= : 0.05	[ : 0.05	e : 0.03	a : 0.03	i : 0.03	r : 0.03	b : 0.01	# : 0.01	
c : 0.29	b : 0.16	d : 0.16	[ : 0.07	" : 0.05	g : 0.05	e : 0.03	s : 0.03	i : 0.03	r : 0.03	= : 0.03	! : 0.01	
c : 0.36	b : 0.20	d : 0.12	o : 0.07	s : 0.03	i : 0.03	r : 0.03	g : 0.03	= : 0.03	[ : 0.01	a : 0.01	e : 0.01	
o : 0.61	c : 0.12	b : 0.07	s : 0.03	r : 0.03	d : 0.03	n : 0.03	e : 0.01	m : 0.01	
o : 0.65	c : 0.09	n : 0.09	s : 0.03	r : 0.03	d : 0.03	l : 0.01	b : 0.01	m : 0.01	
o : 0.65	n : 0.10	m : 0.09	l : 0.05	s : 0.03	r : 0.03	c : 0.01	
o : 0.65	n : 0.10	m : 0.09	l : 0.07	s : 0.03	r : 0.03	
o : 0.65	n : 0.10	m : 0.07	l : 0.05	s : 0.03	r : 0.03	e : 0.01	c : 0.01	
o : 0.58	m : 0.07	n : 0.07	d : 0.07	c : 0.05	e : 0.03	s : 0.03	r : 0.03	l : 0.01	g : 0.01	
c : 0.41	b : 0.16	d : 0.16	g : 0.05	o : 0.03	e : 0.03	s : 0.03	i : 0.03	= : 0.01	a : 0.01	n : 0.01	
c : 0.40	b : 0.21	d : 0.16	g : 0.05	e : 0.03	s : 0.03	i : 0.03	= : 0.01	3 : 0.01	] : 0.01	
c : 0.36	d : 0.16	b : 0.07	3 : 0.07	2 : 0.05	g : 0.05	= : 0.05	] : 0.05	e : 0.03	i : 0.03	a : 0.01	4 : 0.01	
2 : 0.34	3 : 0.10	] : 0.10	d : 0.09	g : 0.05	= : 0.05	b : 0.05	c : 0.03	i : 0.03	4 : 0.03	a : 0.01	e : 0.01	: : 0.01	f : 0.01	
2 : 0.34	3 : 0.10	c : 0.09	b : 0.07	i : 0.05	g : 0.05	= : 0.05	a : 0.03	d : 0.03	] : 0.03	f : 0.03	4 : 0.03	e : 0.01	: : 0.01	
c : 0.21	i : 0.12	e : 0.09	= : 0.09	g : 0.09	2 : 0.05	3 : 0.05	] : 0.05	f : 0.05	b : 0.05	d : 0.03	4 : 0.03	: : 0.01	a : 0.01	
c : 0.21	e : 0.12	i : 0.12	b : 0.10	= : 0.10	g : 0.07	f : 0.07	d : 0.03	] : 0.03	3 : 0.03	4 : 0.03	> : 0.01	
c : 0.18	e : 0.18	i : 0.12	= : 0.10	b : 0.09	f : 0.07	d : 0.05	] : 0.05	4 : 0.03	g : 0.03	2 : 0.01	3 : 0.01	> : 0.01	
e : 0.18	] : 0.12	= : 0.12	i : 0.12	f : 0.09	3 : 0.07	2 : 0.05	c : 0.05	g : 0.05	4 : 0.03	[ : 0.01	d : 0.01	b : 0.01	> : 0.01	
e : 0.16	= : 0.12	i : 0.12	c : 0.10	f : 0.10	g : 0.07	2 : 0.05	3 : 0.05	4 : 0.05	> : 0.03	] : 0.01	d : 0.01	6 : 0.01	b : 0.01	a : 0.01	
f : 0.12	= : 0.12	i : 0.12	e : 0.10	] : 0.10	c : 0.09	g : 0.07	3 : 0.05	> : 0.03	d : 0.03	4 : 0.03	b : 0.01	2 : 0.01	6 : 0.01	: : 0.01	
c : 0.16	i : 0.14	f : 0.10	e : 0.10	= : 0.10	g : 0.07	d : 0.07	b : 0.03	> : 0.03	: : 0.03	o : 0.01	2 : 0.01	] : 0.01	6 : 0.01	a : 0.01	4 : 0.01	
i : 0.14	f : 0.10	= : 0.10	] : 0.10	c : 0.09	e : 0.07	d : 0.07	2 : 0.05	> : 0.03	g : 0.03	: : 0.03	b : 0.03	o : 0.01	3 : 0.01	a : 0.01	6 : 0.01	4 : 0.01	
f : 0.12	e : 0.12	i : 0.12	c : 0.10	= : 0.09	d : 0.09	b : 0.07	: : 0.05	2 : 0.03	> : 0.03	g : 0.03	o : 0.01	3 : 0.01	[ : 0.01	6 : 0.01	] : 0.01	

#score	684.309901245338
#seq	55
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_UTR_m1_run2.txt

#BEAR
"cccxxxxxxxxxxxxxxxccc33	chr16:23584998-23585248(+)$1	250	72	96	19.8871
eeeee^^^^^^^^^^^^^^^^^^^	chr2:105964366-105964692(+)$1	326	149	173	19.1634
^^^^^^^^^^^^^^^^^^^ddddd	chr2:85548099-85548330(-)$1	231	129	153	20.5797
ffffffvvvvvvvvvvvvvfffff	chr3:187898028-187898299(+)$1	271	190	214	20.3562
fffffwwwwwwwwwwwwwwfffff	chr1:113669257-113669621(+)$1	364	203	227	20.9866
eeeeewwwwwwwwwwwwwweeeee	chr4:1386260-1386540(+)$1	280	179	203	21.8014
%%cccwwwwwwwwwwwwwwccc55	chr11:6635106-6635387(-)$1	281	29	53	19.2293
eeeeewwwwwwwwwwwwwweeeee	chr2:85547099-85547342(-)$1	243	111	135	21.8014
^^^^^^^^^^^^^^^^^^^a]ccc	chr19:54377741-54377976(+)$1	235	192	216	20.9028
[eeeeevvvvvvvvvvvvveeeee	chr12:66250228-66250485(+)$1	257	88	112	21.3202
eeeeeuuuuuuuuuuuueeeeedd	chr19:56188028-56188300(+)$1	272	121	145	19.4597
###bbuuuuuuuuuuuubb333cc	chr20:36146708-36146972(-)$1	264	206	230	19.0673
^^^^^^^^^^^^^^^^^^^ggggg	chr6:52367689-52367951(-)$1	262	138	162	21.0872
gggggvvvvvvvvvvvvvgggggg	chr3:187897874-187898152(+)$1	278	159	183	20.5884
eeeeewwwwwwwwwwwwwweeeee	chr2:85547142-85547408(-)$1	266	177	201	21.8014
^^^^^^^^^^^^^^^^^^^fffff	chr19:54378175-54378406(+)$1	231	42	66	20.9899
c^^^^^^^^^^^^^^^^^^cccff	chr5:59423279-59423542(-)$1	263	193	217	20.7654
=======uuuuuuuuuuuu=====	chr4:1386200-1386460(+)$1	260	178	202	19.5605
^^^^^^^^^^^^^^^^^^^^^^^^	chr2:240898943-240899332(-)$1	389	205	229	20.6235
eeeeewwwwwwwwwwwwwweeeee	chr10:124146443-124146716(+)$1	273	74	98	21.8014
^^^^^^^^^^^^^^^^^^^iiiii	chr12:66250522-66250790(+)$1	268	151	175	20.9696
^^^^^^^^^^^^^^^^^^^eeeee	chr9:71398139-71398400(+)$1	261	17	41	21.3117
^^^^^^^^^^^^^^^^^^^ggggg	chr11:57585398-57585684(+)$1	286	62	86	21.0872
======ttttttttttt=======	chr4:1386589-1386824(+)$1	235	192	216	16.9309
ccc^^^^^^^^^^^^^^^^^^^^^	chr19:54377776-54378028(+)$1	252	150	174	19.7284
eeeyyyyyyyyyyyyyyyyeeeee	chr12:49330033-49330310(-)$1	277	51	75	21.0428
fffffwwwwwwwwwwwwwwfffff	chr2:85547651-85547884(-)$1	233	206	230	20.9866
###cccuuuuuuuuuuuuccc444	chr20:34820053-34820322(+)$1	269	15	39	20.3671
eeeeewwwwwwwwwwwwwweeeee	chr4:1386402-1386618(+)$1	216	37	61	21.8014
^^^^^^^^^^^^^^^^^^^fffff	chr19:54378125-54378371(+)$1	246	92	116	20.9899
::cccwwwwwwwwwwwwwwccc::	chr6:7282393-7282718(-)$1	325	133	157	17.7285
d!!cccuuuuuuuuuuuuccc444	chr3:11848721-11849008(-)$1	287	126	150	20.1782
eeeeyyyyyyyyyyyyyyyyeeee	chr6:155585307-155585579(-)$1	272	71	95	20.6056
gggyyyyyyyyyyyyyyyyggggg	chr2:71213573-71213823(-)$1	250	142	166	20.6575
[eeeeevvvvvvvvvvvvveeeee	chr12:66250141-66250412(+)$1	271	175	199	21.3202
eeeeeuuuuuuuuuuuueeeee]e	chr2:176791697-176791980(-)$1	283	133	157	19.7770
[ddddwwwwwwwwwwwwwwdddd]	chr2:85547741-85548008(-)$1	267	13	37	20.8100
ddd[bbuuuuuuuuuuuubb]ddd	chr5:112228337-112228641(-)$1	304	37	61	18.5315
^^^^^^^^^^^^^^^^^^^fffff	chr1:91966648-91966896(+)$1	248	96	120	20.9899
ffffffvvvvvvvvvvvvvfffff	chr2:74090641-74090925(+)$1	284	232	256	20.3562
+ddddvvvvvvvvvvvvvdddd99	chr19:16511909-16512183(-)$1	274	192	216	18.6235
bb^^^^^^^^^^^^^^^^^^^^^^	chr16:58054423-58054813(+)$1	390	165	189	19.6189
^^^^^^^^^^^^^^^^^^^ccc]c	chr1:91966560-91966837(+)$1	277	181	205	21.0523
hhhhhwwwwwwwwwwwwwwhhhhh	chr21:44269595-44269873(-)$1	278	96	120	18.2733
^^^^^^^^^^^^^^^^^^^eeeee	chr6:131203615-131203890(-)$1	275	54	78	21.3117
!!aa!!attttttttttta22a]a	chr16:23585162-23585419(+)$1	257	82	106	18.0642
a[eeeeettttttttttteeeee]	chr2:10494207-10494479(+)$1	272	24	48	17.0898
eeeeeeeettttttttttteeeee	chr2:85547637-85547851(-)$1	214	106	130	16.3864
ddddxxxxxxxxxxxxxxxddddh	chr12:49330278-49330599(-)$1	321	147	171	18.6908
Gffffffuuuuuuuuuuuufffff	chr2:240124-240375(-)$1	251	225	249	18.4427
gggggwwwwwwwwwwwwwwggggg	chr1:91966696-91966938(+)$1	242	160	184	21.2446
fffffwwwwwwwwwwwwwwfffff	chr2:71214961-71215314(-)$1	353	67	91	20.9866
ggggg^^^^^^^^^^^^^^^^^^g	chr12:75896667-75897036(-)$1	369	141	165	18.9313
fffffwwwwwwwwwwwwwwfffff	chr2:85547387-85547685(-)$1	298	7	31	20.9866
^^^^^^^^^^^^^^^^^^^eeeee	chr17:26937537-26937901(-)$1	364	111	135	21.3117
[ddddwwwwwwwwwwwwwwdddd]	chrX:40509290-40509632(-)$1	342	51	75	20.8100
^^^^^^^^^^^^^^^^^^^cccff	chr4:71655672-71655935(+)$1	263	167	191	21.0439
======ttttttttttt=======	chr4:1386705-1386966(+)$1	261	76	100	16.9309
fffffwwwwwwwwwwwwwwfffff	chr2:85547547-85547809(-)$1	262	131	155	20.9866
eeeeeuuuuuuuuuuuueeeee]e	chr2:176791610-176791897(-)$1	287	50	74	19.7770
:ddddvvvvvvvvvvvvvdddddd	chr2:128495069-128495372(-)$1	303	145	169	19.0557
^^^^^^^^^^^^^^^^^^^iiiii	chr9:116169969-116170304(-)$1	335	290	314	20.9696
h^^^^^^^^^^^^^^^^^^^^^^^	chr2:85547858-85548119(-)$1	261	99	123	20.0274
d^^^^^^^^^^^^^^^^^^dddd]	chr2:242688146-242688438(+)$1	292	110	134	20.3800

#otherMatches

#Seq PSSM
UUACUCUUACUUUAACCAUGUGCC	chr16:23584998-23585248(+)$1	250	72	96	19.8871
ucuacuuuaauucuccuuccuCCU	chr2:105964366-105964692(+)$1	326	149	173	19.1634
CUCCUUUCCAUCCACCUUCGUAUG	chr2:85548099-85548330(-)$1	231	129	153	20.5797
UUCCCCUUUGUUUCUGUCUGGGGA	chr3:187898028-187898299(+)$1	271	190	214	20.3562
GCCUGUAAUCUUCAUCACUCAGGU	chr1:113669257-113669621(+)$1	364	203	227	20.9866
cagucucuuuuuagcuucugacug	chr4:1386260-1386540(+)$1	280	179	203	21.8014
GUGCAUACUUCUCAAUCUUUGCUU	chr11:6635106-6635387(-)$1	281	29	53	19.2293
GGCUGUGCCCUCGACUUUCCAGCU	chr2:85547099-85547342(-)$1	243	111	135	21.8014
CUUCCUUCCCUUUCCUCUUGCUGU	chr19:54377741-54377976(+)$1	235	192	216	20.9028
UUCUGAUAAAUCUCUUCCUUCAGG	chr12:66250228-66250485(+)$1	257	88	112	21.3202
gggccucuuucuuccuuggccucc	chr19:56188028-56188300(+)$1	272	121	145	19.4597
UUUCAUCCUUCUUUCCUUGUUCAG	chr20:36146708-36146972(-)$1	264	206	230	19.0673
CCACAAACCAUUCUCAAUAAAGCC	chr6:52367689-52367951(-)$1	262	138	162	21.0872
GGGCAGAAUCCCUCACCGUGCCCA	chr3:187897874-187898152(+)$1	278	159	183	20.5884
GGCUGUGCCCUCGACUUUCCAGCU	chr2:85547142-85547408(-)$1	266	177	201	21.8014
UUUUUCUCAUCUCUUUUCUGGGUU	chr19:54378175-54378406(+)$1	231	42	66	20.9899
cucucucuucaucuuucccggggc	chr5:59423279-59423542(-)$1	263	193	217	20.7654
gaugucauuccacugccucuggca	chr4:1386200-1386460(+)$1	260	178	202	19.5605
cucccugccucuuuccuucccucc	chr2:240898943-240899332(-)$1	389	205	229	20.6235
uacccacuuaaugucuauagggug	chr10:124146443-124146716(+)$1	273	74	98	21.8014
ccccacugacuucauccuaccuug	chr12:66250522-66250790(+)$1	268	151	175	20.9696
uucaauccucuccucaucucuguu	chr9:71398139-71398400(+)$1	261	17	41	21.3117
CCCACCACCCCCUUUACUCGUGCA	chr11:57585398-57585684(+)$1	286	62	86	21.0872
ggaaauuuuagguugucguuucuc	chr4:1386589-1386824(+)$1	235	192	216	16.9309
GCAUCUUCUUCCUUCCCUUUCCUC	chr19:54377776-54378028(+)$1	252	150	174	19.7284
GGUGUUUCAUUCCAUUUCUGCCCA	chr12:49330033-49330310(-)$1	277	51	75	21.0428
UGUCCCUCCCAACUGUCUAGGACA	chr2:85547651-85547884(-)$1	233	206	230	20.9866
CUAGGGCACUGUUUCCUCCCCAUC	chr20:34820053-34820322(+)$1	269	15	39	20.3671
cagucucuuuuuagcuucugacug	chr4:1386402-1386618(+)$1	216	37	61	21.8014
UUUUUCUCAUCUCUUUUCUGGGUU	chr19:54378125-54378371(+)$1	246	92	116	20.9899
CUGGCUGUUUUUCUCUUGUGCCCG	chr6:7282393-7282718(-)$1	325	133	157	17.7285
uuucguugcuccuucucuacguuu	chr3:11848721-11849008(-)$1	287	126	150	20.1782
GUCAGUAUUUUCUUUUUCUAUGAC	chr6:155585307-155585579(-)$1	272	71	95	20.6056
gucuaccuuaacaucucuugauuu	chr2:71213573-71213823(-)$1	250	142	166	20.6575
UUCUGAUAAAUCUCUUCCUUCAGG	chr12:66250141-66250412(+)$1	271	175	199	21.3202
cuugcucucaacguccuguaagug	chr2:176791697-176791980(-)$1	283	133	157	19.7770
UGGCUUUUUCUCAAAGCUUAGUCU	chr2:85547741-85548008(-)$1	267	13	37	20.8100
UGCCUCUCCCGACUCUUUGAUGUG	chr5:112228337-112228641(-)$1	304	37	61	18.5315
UCAUUCACCCUUCUCCUCCUCCGC	chr1:91966648-91966896(+)$1	248	96	120	20.9899
UGGGAaauccauccccuucuuccc	chr2:74090641-74090925(+)$1	284	232	256	20.3562
CCCAUACUCUCUUUUCUCGUGGAC	chr19:16511909-16512183(-)$1	274	192	216	18.6235
ccucucucucuuccuguccucuau	chr16:58054423-58054813(+)$1	390	165	189	19.6189
CAUUCAUUCACCCUUCUCCUCCUC	chr1:91966560-91966837(+)$1	277	181	205	21.0523
GUGGAUGUUUUCAUGUUGUUCCGC	chr21:44269595-44269873(-)$1	278	96	120	18.2733
CCUUCCCUUAUCCUCAUCUUUGGG	chr6:131203615-131203890(-)$1	275	54	78	21.3117
UUGCCUCUGUUCACACCUGUUGUC	chr16:23585162-23585419(+)$1	257	82	106	18.0642
ccacggcgaugcauuccagccguc	chr2:10494207-10494479(+)$1	272	24	48	17.0898
UCUGCUGGUAUCGAAUAGUUCAGC	chr2:85547637-85547851(-)$1	214	106	130	16.3864
CCCCUCACCUUGUUUUUUUGGGGG	chr12:49330278-49330599(-)$1	321	147	171	18.6908
ggagccuucacuuacacauggguu	chr2:240124-240375(-)$1	251	225	249	18.4427
AAAGGUUUUCUCCCUCAGUUCUUU	chr1:91966696-91966938(+)$1	242	160	184	21.2446
CUGUUUGCCUUAAUACCCUGACAG	chr2:71214961-71215314(-)$1	353	67	91	20.9866
AUUCCAUCUUCACCUGUCUCCUGG	chr12:75896667-75897036(-)$1	369	141	165	18.9313
UGUCCCUCCCAACUGUCUAGGACA	chr2:85547387-85547685(-)$1	298	7	31	20.9866
CUUCUUUUCCAUCCUUUCUGUUCA	chr17:26937537-26937901(-)$1	364	111	135	21.3117
UUUGAUUCUCCACUCAUUUUCAAU	chrX:40509290-40509632(-)$1	342	51	75	20.8100
UUUUCCCAGCUCUUACCUUCAUCU	chr4:71655672-71655935(+)$1	263	167	191	21.0439
ggaaauuuuagguugucguuucuc	chr4:1386705-1386966(+)$1	261	76	100	16.9309
UGUCCCUCCCAACUGUCUAGGACA	chr2:85547547-85547809(-)$1	262	131	155	20.9866
cuugcucucaacguccuguaagug	chr2:176791610-176791897(-)$1	287	50	74	19.7770
UGGCUUCUCUUUAUUCUUGGCCUG	chr2:128495069-128495372(-)$1	303	145	169	19.0557
CUAAUCUCACGuuuuguuuuuaag	chr9:116169969-116170304(-)$1	335	290	314	20.9696
ACCAGUUAUCCAAUCACCAAAUCC	chr2:85547858-85548119(-)$1	261	99	123	20.0274
CUCUGAUCCCACUCCAACUGCAGU	chr2:242688146-242688438(+)$1	292	110	134	20.3800

#DB
.(((...............)))..	chr16:23584998-23585248(+)$1	1	72	96	19.8871
(((((...................	chr2:105964366-105964692(+)$1	1	149	173	19.1634
...................)))))	chr2:85548099-85548330(-)$1	1	129	153	20.5797
((((((.............)))))	chr3:187898028-187898299(+)$1	1	190	214	20.3562
(((((..............)))))	chr1:113669257-113669621(+)$1	1	203	227	20.9866
(((((..............)))))	chr4:1386260-1386540(+)$1	1	179	203	21.8014
..(((..............)))..	chr11:6635106-6635387(-)$1	1	29	53	19.2293
(((((..............)))))	chr2:85547099-85547342(-)$1	1	111	135	21.8014
...................).)))	chr19:54377741-54377976(+)$1	1	192	216	20.9028
.(((((.............)))))	chr12:66250228-66250485(+)$1	1	88	112	21.3202
(((((............)))))))	chr19:56188028-56188300(+)$1	1	121	145	19.4597
...((............))...))	chr20:36146708-36146972(-)$1	1	206	230	19.0673
...................)))))	chr6:52367689-52367951(-)$1	1	138	162	21.0872
(((((.............))))))	chr3:187897874-187898152(+)$1	1	159	183	20.5884
(((((..............)))))	chr2:85547142-85547408(-)$1	1	177	201	21.8014
...................)))))	chr19:54378175-54378406(+)$1	1	42	66	20.9899
(..................)))((	chr5:59423279-59423542(-)$1	1	193	217	20.7654
(((((((............)))))	chr4:1386200-1386460(+)$1	1	178	202	19.5605
........................	chr2:240898943-240899332(-)$1	1	205	229	20.6235
(((((..............)))))	chr10:124146443-124146716(+)$1	1	74	98	21.8014
...................)))))	chr12:66250522-66250790(+)$1	1	151	175	20.9696
...................)))))	chr9:71398139-71398400(+)$1	1	17	41	21.3117
...................)))))	chr11:57585398-57585684(+)$1	1	62	86	21.0872
((((((...........)))))))	chr4:1386589-1386824(+)$1	1	192	216	16.9309
(((.....................	chr19:54377776-54378028(+)$1	1	150	174	19.7284
(((................)))))	chr12:49330033-49330310(-)$1	1	51	75	21.0428
(((((..............)))))	chr2:85547651-85547884(-)$1	1	206	230	20.9866
...(((............)))...	chr20:34820053-34820322(+)$1	1	15	39	20.3671
(((((..............)))))	chr4:1386402-1386618(+)$1	1	37	61	21.8014
...................)))))	chr19:54378125-54378371(+)$1	1	92	116	20.9899
..(((..............)))..	chr6:7282393-7282718(-)$1	1	133	157	17.7285
(..(((............)))...	chr3:11848721-11849008(-)$1	1	126	150	20.1782
((((................))))	chr6:155585307-155585579(-)$1	1	71	95	20.6056
(((................)))))	chr2:71213573-71213823(-)$1	1	142	166	20.6575
.(((((.............)))))	chr12:66250141-66250412(+)$1	1	175	199	21.3202
(((((............))))).)	chr2:176791697-176791980(-)$1	1	133	157	19.7770
.((((..............)))).	chr2:85547741-85548008(-)$1	1	13	37	20.8100
(((.((............)).)))	chr5:112228337-112228641(-)$1	1	37	61	18.5315
...................)))))	chr1:91966648-91966896(+)$1	1	96	120	20.9899
((((((.............)))))	chr2:74090641-74090925(+)$1	1	232	256	20.3562
.((((.............))))..	chr19:16511909-16512183(-)$1	1	192	216	18.6235
((......................	chr16:58054423-58054813(+)$1	1	165	189	19.6189
...................))).)	chr1:91966560-91966837(+)$1	1	181	205	21.0523
(((((..............)))))	chr21:44269595-44269873(-)$1	1	96	120	18.2733
...................)))))	chr6:131203615-131203890(-)$1	1	54	78	21.3117
..((..(...........)..).)	chr16:23585162-23585419(+)$1	1	82	106	18.0642
(.(((((...........))))).	chr2:10494207-10494479(+)$1	1	24	48	17.0898
)))(((((...........)))))	chr2:85547637-85547851(-)$1	1	106	130	16.3864
((((...............))))(	chr12:49330278-49330599(-)$1	1	147	171	18.6908
)((((((............)))))	chr2:240124-240375(-)$1	1	225	249	18.4427
(((((..............)))))	chr1:91966696-91966938(+)$1	1	160	184	21.2446
(((((..............)))))	chr2:71214961-71215314(-)$1	1	67	91	20.9866
(((((..................)	chr12:75896667-75897036(-)$1	1	141	165	18.9313
(((((..............)))))	chr2:85547387-85547685(-)$1	1	7	31	20.9866
...................)))))	chr17:26937537-26937901(-)$1	1	111	135	21.3117
.((((..............)))).	chrX:40509290-40509632(-)$1	1	51	75	20.8100
...................)))))	chr4:71655672-71655935(+)$1	1	167	191	21.0439
((((((...........)))))))	chr4:1386705-1386966(+)$1	1	76	100	16.9309
(((((..............)))))	chr2:85547547-85547809(-)$1	1	131	155	20.9866
(((((............))))).)	chr2:176791610-176791897(-)$1	1	50	74	19.7770
.((((.............))))((	chr2:128495069-128495372(-)$1	1	145	169	19.0557
...................)))))	chr9:116169969-116170304(-)$1	1	290	314	20.9696
(.......................	chr2:85547858-85548119(-)$1	1	99	123	20.0274
(..................)))).	chr2:242688146-242688438(+)$1	1	110	134	20.3800

#PSSM
^ : 0.23	e : 0.18	f : 0.10	[ : 0.06	g : 0.06	d : 0.06	= : 0.04	# : 0.03	c : 0.03	: : 0.03	h : 0.03	" : 0.01	% : 0.01	+ : 0.01	b : 0.01	! : 0.01	a : 0.01	G : 0.01	
^ : 0.28	e : 0.21	f : 0.12	d : 0.09	g : 0.06	= : 0.04	c : 0.03	# : 0.03	! : 0.03	% : 0.01	: : 0.01	b : 0.01	h : 0.01	[ : 0.01	
^ : 0.29	e : 0.23	f : 0.12	d : 0.09	c : 0.06	g : 0.06	= : 0.04	# : 0.03	! : 0.01	h : 0.01	a : 0.01	
^ : 0.31	e : 0.21	f : 0.12	c : 0.07	d : 0.07	g : 0.04	= : 0.04	y : 0.03	b : 0.01	[ : 0.01	h : 0.01	a : 0.01	
^ : 0.31	e : 0.20	f : 0.12	c : 0.06	d : 0.06	g : 0.04	= : 0.04	y : 0.04	x : 0.03	b : 0.03	h : 0.01	! : 0.01	
^ : 0.34	w : 0.25	e : 0.06	u : 0.06	f : 0.04	v : 0.04	= : 0.04	y : 0.04	x : 0.03	c : 0.03	b : 0.01	! : 0.01	
^ : 0.34	w : 0.25	v : 0.10	u : 0.10	y : 0.04	x : 0.03	t : 0.03	e : 0.03	= : 0.01	a : 0.01	f : 0.01	
^ : 0.34	w : 0.25	u : 0.14	v : 0.10	t : 0.06	y : 0.04	x : 0.03	e : 0.01	
^ : 0.34	w : 0.25	u : 0.14	v : 0.10	t : 0.07	y : 0.04	x : 0.03	
^ : 0.34	w : 0.25	u : 0.14	v : 0.10	t : 0.07	y : 0.04	x : 0.03	
^ : 0.34	w : 0.25	u : 0.14	v : 0.10	t : 0.07	y : 0.04	x : 0.03	
^ : 0.34	w : 0.25	u : 0.14	v : 0.10	t : 0.07	y : 0.04	x : 0.03	
^ : 0.34	w : 0.25	u : 0.14	v : 0.10	t : 0.07	y : 0.04	x : 0.03	
^ : 0.34	w : 0.25	u : 0.14	v : 0.10	t : 0.07	y : 0.04	x : 0.03	
^ : 0.34	w : 0.25	u : 0.14	v : 0.10	t : 0.07	y : 0.04	x : 0.03	
^ : 0.34	w : 0.25	u : 0.14	v : 0.10	t : 0.07	y : 0.04	x : 0.03	
^ : 0.34	w : 0.25	u : 0.14	v : 0.10	t : 0.07	y : 0.04	x : 0.03	
^ : 0.34	w : 0.25	v : 0.10	u : 0.07	e : 0.04	y : 0.04	t : 0.04	x : 0.03	= : 0.03	b : 0.01	
^ : 0.34	w : 0.25	v : 0.06	e : 0.06	y : 0.04	x : 0.03	b : 0.03	u : 0.03	= : 0.03	c : 0.03	d : 0.03	g : 0.01	a : 0.01	t : 0.01	
e : 0.25	f : 0.17	c : 0.12	d : 0.10	^ : 0.09	g : 0.07	= : 0.04	i : 0.03	a : 0.01	3 : 0.01	y : 0.01	b : 0.01	h : 0.01	2 : 0.01	
e : 0.26	f : 0.17	c : 0.12	d : 0.10	^ : 0.09	g : 0.07	= : 0.04	] : 0.03	i : 0.03	3 : 0.01	h : 0.01	2 : 0.01	
e : 0.26	f : 0.17	d : 0.12	c : 0.10	^ : 0.09	g : 0.07	= : 0.04	i : 0.03	4 : 0.03	3 : 0.01	h : 0.01	a : 0.01	
e : 0.21	f : 0.20	d : 0.12	^ : 0.09	g : 0.07	] : 0.06	= : 0.04	c : 0.03	i : 0.03	4 : 0.03	3 : 0.01	5 : 0.01	: : 0.01	9 : 0.01	h : 0.01	
e : 0.23	f : 0.20	g : 0.09	^ : 0.07	d : 0.06	] : 0.06	c : 0.04	= : 0.04	i : 0.03	4 : 0.03	h : 0.03	3 : 0.01	5 : 0.01	: : 0.01	9 : 0.01	a : 0.01	

#score	1288.941370813945
#seq	64
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF814JGE_UPF1_transcript_m3_run1.txt

#BEAR
bb[eeeeeqqqqqqqqeeeee	chr9:131910790-131911052(+)$1	262	3	24	14.5598
ccceeeeeqqqqqqqqeeeee	chr11:73692420-73692642(-)$1	222	106	127	14.6159
ccceeeeeqqqqqqqqeeeee	chr7:137562444-137562685(-)$1	241	60	81	14.6159
ddddddddqqqqqqqqdddde	chr15:55495108-55495326(-)$1	218	15	36	13.3151
iiiiicccqqqqqqqqccc]i	chr20:60776844-60777200(+)$1	356	318	339	15.3666
!!ffffffqqqqqqqqfffff	chr9:134133467-134133721(-)$1	254	149	170	14.1080
$$$$$cccqqqqqqqqccc55	chr17:40467224-40467459(-)$1	235	82	103	12.9238
cc[bb[bbqqqqqqqqbbbb]	chr1:32095882-32096169(-)$1	287	130	151	13.5043
:gggggggqqqqqqqqggggg	chr15:75194030-75194299(-)$1	269	41	62	14.2798
===[bb[aqqqqqqqqa]bb]	chr6:32082971-32083216(-)$1	245	105	126	13.9897
dddeeeeeqqqqqqqqeeeee	chr5:141318797-141319040(+)$1	243	56	77	14.1600
a[ffffffqqqqqqqqfffff	chr1:19585967-19586215(+)$1	248	120	141	14.0354
&&&eeeeeqqqqqqqqeeeee	chr1:27731785-27732002(-)$1	217	151	172	13.1329
bbffffffqqqqqqqqfffff	chr16:2821085-2821335(+)$1	250	71	92	13.5892
bb"""cccqqqqqqqqccc]b	chr17:46699042-46699331(-)$1	289	10	31	14.6751
bb[eeeeeqqqqqqqqeeeee	chrX:64960480-64960722(+)$1	242	164	185	14.5598
ccceeeeeqqqqqqqqeeeee	chr17:73000443-73000703(+)$1	260	24	45	14.6159
eeee[cccqqqqqqqqccc33	chr12:93969320-93969604(+)$1	284	38	59	15.1777
hhhh[cccqqqqqqqqccchh	chr1:183522774-183523037(+)$1	263	192	213	14.1976
:gggggggqqqqqqqqggggg	chr10:79735424-79735668(-)$1	244	196	217	14.2798
ee!!bb[aqqqqqqqqa]bbe	chr16:337387-337684(-)$1	297	8	29	13.6442
&bbbb[bbqqqqqqqqbb333	chr10:81072839-81073112(+)$1	273	64	85	13.2024
###eeeeeqqqqqqqqeeeee	chr19:10941810-10942098(+)$1	288	168	189	14.8952
bb####bbqqqqqqqqbb444	chr1:32377198-32377527(-)$1	329	163	184	13.9854
[bb!!cccqqqqqqqqccc22	chr22:38615389-38615633(-)$1	244	157	178	14.8576
b[ddddbbqqqqqqqqbb]dd	chr9:139820619-139820898(+)$1	279	83	104	13.5301
c[ccccccqqqqqqqqccc]c	chr11:9002443-9002690(-)$1	247	142	163	15.0845
"a[eeeeeqqqqqqqqeeeee	chr6:34557994-34558237(-)$1	243	74	95	14.9104
ggggddddqqqqqqqqdddd7	chr6:42046975-42047193(+)$1	218	89	110	13.4852
hhhhhh[aqqqqqqqqa]hhh	chr14:93693719-93693992(+)$1	273	173	194	13.2940
eeee[cccqqqqqqqqccc22	chr1:27732155-27732407(-)$1	252	219	240	14.7576
:gggggggqqqqqqqqggggg	chr2:131131821-131132072(+)$1	251	85	106	14.2798
""eeeeeaqqqqqqqqa]eee	chr17:40463515-40463775(+)$1	260	33	54	14.8382
eeeeddddqqqqqqqqdddd2	chr1:11848249-11848497(-)$1	248	48	69	13.5800
========qqqqqqqq=====	chr2:73171501-73171776(-)$1	275	114	135	15.3817
!!ffffffqqqqqqqqfffff	chr1:22149435-22149697(-)$1	262	150	171	14.1080
c[a!!cccqqqqqqqqccc55	chr10:102753670-102753958(+)$1	288	104	125	14.0422
:eeeee[aqqqqqqqqa]eee	chr3:160219285-160219516(-)$1	231	89	110	13.8237
"gggggggqqqqqqqqggggg	chr17:40994262-40994551(+)$1	289	256	277	15.1037
iiiiiiiiqqqqqqqqiiiii	chr19:40738409-40738675(-)$1	266	90	111	15.0321
e[ccc[bbqqqqqqqqbb]cc	chr1:116947112-116947452(+)$1	340	220	241	14.0414
(((eeeeeqqqqqqqqeeeee	chr12:69747458-69747734(+)$1	276	184	205	12.9203
iiiiiiiiqqqqqqqqiiiii	chrX:48436479-48436697(+)$1	218	98	119	15.0321
[gggggggqqqqqqqqggggg	chr17:80201706-80201960(-)$1	254	145	166	15.0785
c[bb[cccqqqqqqqqccc22	chr2:219264735-219264974(+)$1	239	88	109	14.7054
ff[bb[bbqqqqqqqqbbbbf	chr1:59247097-59247363(-)$1	266	72	93	13.0434
dddd[cccqqqqqqqqcccdd	chr2:70903229-70903483(-)$1	254	166	187	14.3000
c####cccqqqqqqqqccc44	chr20:1288616-1288863(+)$1	247	155	176	15.3319
ddd!!cccqqqqqqqqccc33	chr1:29445744-29445969(+)$1	225	93	114	15.1364
ggggg[bbqqqqqqqqbbggg	chr3:195636254-195636573(-)$1	319	254	275	14.5515
=====[bbqqqqqqqqbb]==	chr3:196558783-196559084(+)$1	301	57	78	14.7681
ffffddddqqqqqqqqdddd]	chr2:69549796-69550019(-)$1	223	37	58	13.5535
b!!eeeeeqqqqqqqqeeeee	chr6:36822784-36823003(-)$1	219	3	24	14.8808
ccc!!cccqqqqqqqqccccc	chr19:4794671-4794916(+)$1	245	25	46	15.1845
[a!!ddddqqqqqqqqdddd2	chr17:47126782-47127007(+)$1	225	92	113	14.2626
eee!!cccqqqqqqqqccc]e	chr5:126889968-126890216(+)$1	248	110	131	15.0957
:gggggggqqqqqqqqggggg	chr16:2758030-2758321(+)$1	291	146	167	14.2798
ggggggbbqqqqqqqqbb]gg	chr22:43563438-43563680(-)$1	242	167	188	14.4649

#otherMatches

#Seq PSSM
GGUGAGGUAAGAGACAGCCUC	chr9:131910790-131911052(+)$1	262	3	24	14.5598
GACCUUACAAAGCCGGGUAAG	chr11:73692420-73692642(-)$1	222	106	127	14.6159
CCAGAUUGGUUCCAAAUAGUU	chr7:137562444-137562685(-)$1	241	60	81	14.6159
GGAAAUCAUUUAAGUUUGGUA	chr15:55495108-55495326(-)$1	218	15	36	13.3151
UGCAGCAGCGCCUUUCCUGUC	chr20:60776844-60777200(+)$1	356	318	339	15.3666
ACCAGGAGGCACAAGACUCUU	chr9:134133467-134133721(-)$1	254	149	170	14.1080
CCUUCUGCCUGUUUCUGUAAG	chr17:40467224-40467459(-)$1	235	82	103	12.9238
UGAGGACCGGGGCUGAGGCCA	chr1:32095882-32096169(-)$1	287	130	151	13.5043
AGUUAGAGAAAAACUGCUCUG	chr15:75194030-75194299(-)$1	269	41	62	14.2798
AGUUCAGGUUUAUGUGUGUGC	chr6:32082971-32083216(-)$1	245	105	126	13.9897
cuaacuguaaaaaaaaauagu	chr5:141318797-141319040(+)$1	243	56	77	14.1600
GUCAGCCAACUUCCACUGGCU	chr1:19585967-19586215(+)$1	248	120	141	14.0354
UCAGAAGCAACUUGUGGCUUU	chr1:27731785-27732002(-)$1	217	151	172	13.1329
CAGGGCCAGGGAGGCAUGGCC	chr16:2821085-2821335(+)$1	250	71	92	13.5892
GGCCCUGCAUUCUUCCGCACC	chr17:46699042-46699331(-)$1	289	10	31	14.6751
GGAUGAGUACCCAAAAGCUCA	chrX:64960480-64960722(+)$1	242	164	185	14.5598
GCCUCACCCUCAGACUGGUGA	chr17:73000443-73000703(+)$1	260	24	45	14.6159
AGGCCUCACUGCAAUUUGAUA	chr12:93969320-93969604(+)$1	284	38	59	15.1777
GGCAGCUGCAACAUUCCAGUG	chr1:183522774-183523037(+)$1	263	192	213	14.1976
GCACCUGUUGUCUUCUGCGGG	chr10:79735424-79735668(-)$1	244	196	217	14.2798
AGCUUGUCUCUUGCCUGCCAC	chr16:337387-337684(-)$1	297	8	29	13.6442
UGCCUCCCUGCUUCCUGGUCC	chr10:81072839-81073112(+)$1	273	64	85	13.2024
AGAGGGGGGACCAGAACCCUU	chr19:10941810-10942098(+)$1	288	168	189	14.8952
UUAAAAACCAAAUUUCGUGAA	chr1:32377198-32377527(-)$1	329	163	184	13.9854
UAUGAUGUAUGAGAAGACAGA	chr22:38615389-38615633(-)$1	244	157	178	14.8576
CAGUGCCCAUGUAGCAGGAGC	chr9:139820619-139820898(+)$1	279	83	104	13.5301
UAGUUCUGAAAAUAGGCAGUA	chr11:9002443-9002690(-)$1	247	142	163	15.0845
AUGUGUGAAUGCUGAAUCACA	chr6:34557994-34558237(-)$1	243	74	95	14.9104
GGGGAGAACAACUUCAUUCUU	chr6:42046975-42047193(+)$1	218	89	110	13.4852
UCUGAGGUUUGGUCAUAGCUU	chr14:93693719-93693992(+)$1	273	173	194	13.2940
CUCGGGGGGCCGGGGACCCAG	chr1:27732155-27732407(-)$1	252	219	240	14.7576
aauuuuuuuuuuuuuuaagaa	chr2:131131821-131132072(+)$1	251	85	106	14.2798
GGGGCCCCGGGACUUGGAGGG	chr17:40463515-40463775(+)$1	260	33	54	14.8382
GUGCACCCACUCACCAGGGUC	chr1:11848249-11848497(-)$1	248	48	69	13.5800
CAGCCCAGAUGGCUCCCUGGG	chr2:73171501-73171776(-)$1	275	114	135	15.3817
CUGGGUGGGCCCAGAACUGCC	chr1:22149435-22149697(-)$1	262	150	171	14.1080
agcaggucagauucaaggcag	chr10:102753670-102753958(+)$1	288	104	125	14.0422
UGGACAAUGUUGAAUGAAUGU	chr3:160219285-160219516(-)$1	231	89	110	13.8237
CCUGGUUGCCUUUUCCCAGCC	chr17:40994262-40994551(+)$1	289	256	277	15.1037
CUUGGGCCCCAUCCCUGGCCC	chr19:40738409-40738675(-)$1	266	90	111	15.0321
AAAGACUGAAAGAAUACAUUU	chr1:116947112-116947452(+)$1	340	220	241	14.0414
AUAUAAGAAAAGGUUAUCUUA	chr12:69747458-69747734(+)$1	276	184	205	12.9203
UUUUUUUUUUAAUACUGGAAG	chrX:48436479-48436697(+)$1	218	98	119	15.0321
GAGAGCUUGGAAGCAGAGGCU	chr17:80201706-80201960(-)$1	254	145	166	15.0785
CGGCCGUCAUUACUCAGAUCA	chr2:219264735-219264974(+)$1	239	88	109	14.7054
GUGAGAGCGAGGCUGAGCCUA	chr1:59247097-59247363(-)$1	266	72	93	13.0434
GGCAUGUGUUUGAAAUCACUG	chr2:70903229-70903483(-)$1	254	166	187	14.3000
CUUCCUAUUGUGUCUUGUGUU	chr20:1288616-1288863(+)$1	247	155	176	15.3319
UCUGUCCAGGUAGAAAUGGUG	chr1:29445744-29445969(+)$1	225	93	114	15.1364
GCUGCCGGAGCAGCAGCCGCA	chr3:195636254-195636573(-)$1	319	254	275	14.5515
UGUAUAUAAGAAAAAAUAGAU	chr3:196558783-196559084(+)$1	301	57	78	14.7681
AAUGGUCCAUGUUUGGGGGCA	chr2:69549796-69550019(-)$1	223	37	58	13.5535
GAAUUUUUGCCAAAUGAAAAA	chr6:36822784-36823003(-)$1	219	3	24	14.8808
UCAACCCCUAAAACAUGGGUG	chr19:4794671-4794916(+)$1	245	25	46	15.1845
CAGGCCUGAGAAUGAGUGGGA	chr17:47126782-47127007(+)$1	225	92	113	14.2626
CGAAGAACUCCUGGUUGUUAU	chr5:126889968-126890216(+)$1	248	110	131	15.0957
UGGAGGCCUGUCCACUGGCUU	chr16:2758030-2758321(+)$1	291	146	167	14.2798
UGUGGGGCCCCACACUGCACC	chr22:43563438-43563680(-)$1	242	167	188	14.4649

#DB
((.(((((........)))))	chr9:131910790-131911052(+)$1	1	3	24	14.5598
((((((((........)))))	chr11:73692420-73692642(-)$1	1	106	127	14.6159
((((((((........)))))	chr7:137562444-137562685(-)$1	1	60	81	14.6159
))))((((........))))(	chr15:55495108-55495326(-)$1	1	15	36	13.3151
((((((((........))).)	chr20:60776844-60777200(+)$1	1	318	339	15.3666
..((((((........)))))	chr9:134133467-134133721(-)$1	1	149	170	14.1080
.....(((........)))..	chr17:40467224-40467459(-)$1	1	82	103	12.9238
((.((.((........)))).	chr1:32095882-32096169(-)$1	1	130	151	13.5043
.(((((((........)))))	chr15:75194030-75194299(-)$1	1	41	62	14.2798
(((.((.(........).)).	chr6:32082971-32083216(-)$1	1	105	126	13.9897
)))(((((........)))))	chr5:141318797-141319040(+)$1	1	56	77	14.1600
(.((((((........)))))	chr1:19585967-19586215(+)$1	1	120	141	14.0354
...(((((........)))))	chr1:27731785-27732002(-)$1	1	151	172	13.1329
((((((((........)))))	chr16:2821085-2821335(+)$1	1	71	92	13.5892
((...(((........))).)	chr17:46699042-46699331(-)$1	1	10	31	14.6751
((.(((((........)))))	chrX:64960480-64960722(+)$1	1	164	185	14.5598
((((((((........)))))	chr17:73000443-73000703(+)$1	1	24	45	14.6159
((((.(((........)))..	chr12:93969320-93969604(+)$1	1	38	59	15.1777
((((.(((........)))))	chr1:183522774-183523037(+)$1	1	192	213	14.1976
.(((((((........)))))	chr10:79735424-79735668(-)$1	1	196	217	14.2798
((..((.(........).)))	chr16:337387-337684(-)$1	1	8	29	13.6442
.((((.((........))...	chr10:81072839-81073112(+)$1	1	64	85	13.2024
...(((((........)))))	chr19:10941810-10942098(+)$1	1	168	189	14.8952
((....((........))...	chr1:32377198-32377527(-)$1	1	163	184	13.9854
.((..(((........)))..	chr22:38615389-38615633(-)$1	1	157	178	14.8576
(.((((((........)).))	chr9:139820619-139820898(+)$1	1	83	104	13.5301
(.((((((........))).)	chr11:9002443-9002690(-)$1	1	142	163	15.0845
.(.(((((........)))))	chr6:34557994-34558237(-)$1	1	74	95	14.9104
((((((((........)))).	chr6:42046975-42047193(+)$1	1	89	110	13.4852
((((((.(........).)))	chr14:93693719-93693992(+)$1	1	173	194	13.2940
((((.(((........)))..	chr1:27732155-27732407(-)$1	1	219	240	14.7576
.(((((((........)))))	chr2:131131821-131132072(+)$1	1	85	106	14.2798
..((((((........).)))	chr17:40463515-40463775(+)$1	1	33	54	14.8382
((((((((........)))).	chr1:11848249-11848497(-)$1	1	48	69	13.5800
((((((((........)))))	chr2:73171501-73171776(-)$1	1	114	135	15.3817
..((((((........)))))	chr1:22149435-22149697(-)$1	1	150	171	14.1080
(.(..(((........)))..	chr10:102753670-102753958(+)$1	1	104	125	14.0422
.(((((.(........).)))	chr3:160219285-160219516(-)$1	1	89	110	13.8237
.(((((((........)))))	chr17:40994262-40994551(+)$1	1	256	277	15.1037
((((((((........)))))	chr19:40738409-40738675(-)$1	1	90	111	15.0321
(.(((.((........)).))	chr1:116947112-116947452(+)$1	1	220	241	14.0414
...(((((........)))))	chr12:69747458-69747734(+)$1	1	184	205	12.9203
((((((((........)))))	chrX:48436479-48436697(+)$1	1	98	119	15.0321
.(((((((........)))))	chr17:80201706-80201960(-)$1	1	145	166	15.0785
(.((.(((........)))..	chr2:219264735-219264974(+)$1	1	88	109	14.7054
((.((.((........)))))	chr1:59247097-59247363(-)$1	1	72	93	13.0434
((((.(((........)))))	chr2:70903229-70903483(-)$1	1	166	187	14.3000
(....(((........)))..	chr20:1288616-1288863(+)$1	1	155	176	15.3319
(((..(((........)))..	chr1:29445744-29445969(+)$1	1	93	114	15.1364
(((((.((........)))))	chr3:195636254-195636573(-)$1	1	254	275	14.5515
(((((.((........)).))	chr3:196558783-196559084(+)$1	1	57	78	14.7681
((((((((........)))).	chr2:69549796-69550019(-)$1	1	37	58	13.5535
(..(((((........)))))	chr6:36822784-36823003(-)$1	1	3	24	14.8808
(((..(((........)))))	chr19:4794671-4794916(+)$1	1	25	46	15.1845
.(..((((........)))).	chr17:47126782-47127007(+)$1	1	92	113	14.2626
(((..(((........))).)	chr5:126889968-126890216(+)$1	1	110	131	15.0957
.(((((((........)))))	chr16:2758030-2758321(+)$1	1	146	167	14.2798
((((((((........)).))	chr22:43563438-43563680(-)$1	1	167	188	14.4649

#PSSM
c : 0.15	b : 0.12	e : 0.10	: : 0.08	d : 0.06	i : 0.05	= : 0.05	[ : 0.05	" : 0.05	g : 0.05	! : 0.03	& : 0.03	h : 0.03	f : 0.03	$ : 0.01	a : 0.01	# : 0.01	( : 0.01	
g : 0.15	b : 0.12	[ : 0.10	e : 0.10	c : 0.08	d : 0.06	i : 0.05	! : 0.05	= : 0.05	h : 0.03	# : 0.03	a : 0.03	f : 0.03	$ : 0.01	& : 0.01	" : 0.01	( : 0.01	
g : 0.15	c : 0.10	e : 0.10	[ : 0.08	d : 0.08	f : 0.08	i : 0.05	= : 0.05	! : 0.05	b : 0.05	# : 0.05	h : 0.03	$ : 0.01	& : 0.01	" : 0.01	a : 0.01	( : 0.01	
e : 0.27	g : 0.15	! : 0.12	f : 0.08	b : 0.06	d : 0.05	i : 0.05	h : 0.03	# : 0.03	c : 0.03	= : 0.03	$ : 0.01	[ : 0.01	" : 0.01	
e : 0.22	g : 0.13	d : 0.10	b : 0.08	[ : 0.08	! : 0.08	f : 0.06	i : 0.05	# : 0.03	c : 0.03	= : 0.03	$ : 0.01	" : 0.01	h : 0.01	
c : 0.25	e : 0.22	g : 0.12	d : 0.10	[ : 0.10	f : 0.06	b : 0.03	i : 0.03	# : 0.01	h : 0.01	= : 0.01	
c : 0.25	e : 0.20	b : 0.15	g : 0.10	d : 0.08	f : 0.06	[ : 0.06	i : 0.03	= : 0.01	
c : 0.25	e : 0.18	b : 0.15	g : 0.10	d : 0.08	a : 0.08	f : 0.06	i : 0.03	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.25	e : 0.18	b : 0.15	g : 0.10	d : 0.08	a : 0.08	f : 0.06	i : 0.03	= : 0.01	
c : 0.25	e : 0.18	b : 0.15	g : 0.10	d : 0.08	] : 0.08	f : 0.06	i : 0.03	= : 0.01	
c : 0.25	e : 0.22	g : 0.12	d : 0.08	f : 0.06	b : 0.06	] : 0.06	i : 0.03	3 : 0.01	4 : 0.01	h : 0.01	= : 0.01	
e : 0.22	g : 0.13	d : 0.12	] : 0.06	f : 0.06	b : 0.06	3 : 0.05	2 : 0.05	5 : 0.03	h : 0.03	4 : 0.03	= : 0.03	i : 0.03	c : 0.03	
e : 0.27	g : 0.13	f : 0.08	2 : 0.08	i : 0.05	] : 0.05	3 : 0.05	c : 0.05	5 : 0.03	h : 0.03	4 : 0.03	d : 0.03	= : 0.03	b : 0.01	7 : 0.01	

#score	830.1720187367162
#seq	58
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_UTR_m1_run1.txt

#BEAR
%ccc[eeeeeccca[bblllbb]a]ccc]eeeee]c	chr15:90969241-90969447(+)$1	206	73	109	10.4646
fff[iiiiiiiiiccclllccc333iiiiiiiii33	chr3:184044656-184044871(+)$1	215	105	141	14.1213
ciiiiiiiii!!cccrrrrrrrrrccc22iiiiiii	chr1:19430537-19430769(-)$1	232	45	81	10.9807
bb[ffffff####ccclllccc4444ffffffbbff	chr11:61077182-61077441(-)$1	259	114	150	12.4220
b"""bb[ggggggg[ccclllccc]ggggggg]bb3	chr17:57737796-57738004(+)$1	208	153	189	11.0024
ddd[cccccc[eeeeellleeeee]ccc22ccc]dd	chr10:32344882-32345194(-)$1	312	54	90	10.9637
!a[ggggggg$$$$$ccclllcccggggggg]a22g	chr12:6715389-6715647(-)$1	258	211	247	10.9932
dddd[ffffff!!ccclllcccffffff]ddddbbi	chr11:70189769-70190073(+)$1	304	137	173	10.4085
cc[==========[ccclllccc]==========cc	chr4:68566666-68566969(-)$1	303	158	194	14.9121
bb[ffffff####ccclllccc4444ffffffbbff	chr11:61077241-61077493(-)$1	252	166	202	12.4220
d!!ccc"""ggggggglllggggggg333cccdddd	chr19:18546835-18547096(-)$1	261	80	116	11.5159
#dddd[ccc[bb[ccclllcccbb]ccc]dddd444	chr3:47890609-47890859(+)$1	250	183	219	11.3099
iii[bb[ccc[eeeeellleeeeeccc]bb]iiiii	chr8:17780457-17780729(+)$1	272	157	193	10.9477
dd[iiiiiiiii!!bbmmmmbb22iiiiiiiii]dd	chr7:135282683-135282933(+)$1	250	113	149	12.0163
ff[ccc[ccca[eeeeellleeeee]a22ccccccf	chr1:19536574-19536846(-)$1	272	41	77	11.6077
ffffff[aa!!eeeeemmmmeeeee22a]affffff	chr2:109335884-109336141(+)$1	257	54	90	11.0229
ccc!!eeeeeddddoooooodddd22eeeee22ccc	chrX:153587999-153588209(-)$1	210	138	174	10.9916
iiiii[a####eeeeemmmmeeeeea]iiiiiiiii	chr5:139781388-139781658(+)$1	270	222	258	11.9851
c[dddd[ccc!!cccmmmmccc333ccc]dddd22c	chr8:48873455-48873674(+)$1	219	181	217	12.3731
dd!!===========oooooo===========22dd	chr7:158457122-158457357(-)$1	235	162	198	13.2505
gg"""dddd!!cccooooooccc22ddddggggggg	chr7:5270367-5270726(+)$1	359	282	318	12.2279
iiiiiiii"""bb[bbmmmmbb]bb22iiiiiiiii	chr7:158444883-158445118(-)$1	235	178	214	11.1867
!a[dddd"""a[ddddmmmmdddd]a]dddd]a22f	chr5:218337-218632(+)$1	295	124	160	11.8043
ffffff[ccc!!cccnnnnnccc22cccffffff]b	chr6:64345705-64345992(+)$1	287	181	217	11.4700
dd[bbdddd!!bbcccooooooccc]bb]dddd333	chr19:34949646-34949907(+)$1	261	111	147	10.7337
c"""ffffff####bbmmmmbb22ffffff333ccc	chr11:61077764-61077990(-)$1	226	105	141	11.1621
gggggg!!bb[cccoooooocccbb]ggggggg]bb	chr10:105726885-105727157(+)$1	272	164	200	11.7308
:ggggggg"""bbddddllldddd]bb333gggggg	chr12:57883978-57884235(+)$1	257	131	167	11.2109
bbbccc[a[bb!!cccmmmmccc]bb]a]ccc]bb]	chr16:23847391-23847669(+)$1	278	74	110	11.5129
[===========!!bbmmmmbb]===========]d	chr19:7707262-7707513(+)$1	251	208	244	13.0978
ff[ffffff"""ddddmmmmdddd]ffffff]ffff	chr10:129924330-129924590(-)$1	260	58	94	11.8626
ff[a[a!!a[eeeeennnnneeeee]a22a]a]fff	chr5:149424971-149425225(+)$1	254	132	168	10.4704
"ffffffccc!!ddddmmmmdddd4444ccc]ffff	chr10:105727244-105727530(+)$1	286	200	236	12.2419
ccc!!eeeeeddddoooooodddd22eeeee22ccc	chrX:153587905-153588114(-)$1	209	43	79	10.9916
cc[ddddccc!!ccclllccc4444ccc]dddd]cc	chr2:231921487-231921795(+)$1	308	231	267	12.3807
[a[dddd[a[a[ddddlllddddaa]dddd]a22ff	chr3:184041092-184041348(+)$1	256	34	70	11.6448
cc[a!!bb[a"""cccmmmmccc333a]bb22a]cc	chr14:78082759-78083121(-)$1	362	265	301	13.5264
"""ddddccc[cccccclllccc22ccc]ccc]ddd	chr19:10247760-10248049(-)$1	289	16	52	13.0509
ffffff[iiiiiiiiimmmmiiiiiiiii22fffff	chr3:127335723-127335960(+)$1	237	173	209	11.2663
eeeeeeeeee[a[cccmmmmccc]a]eeeee4444e	chr3:25705625-25705905(-)$1	280	59	95	11.6835
dd!!bb[ggggggg[bblllbb333gggggggbb22	chr11:122930822-122931068(-)$1	246	133	169	11.0529
ccceeeee[gggggggmmmmgggggggeeeee22cc	chr1:186344168-186344431(-)$1	263	171	207	11.0348
"ffffff[a[ccc[cccmmmmccc]ccc]affffff	chr5:5422728-5423056(+)$1	328	99	135	11.4052
ggggg"""bb[ddddlllddddbb333ggggggg]g	chr16:89350992-89351253(-)$1	261	140	176	10.8530
dddd[a[eeeee[a[aooooooa]aeeeee]a]ddd	chr9:35072375-35072665(-)$1	290	54	90	10.2972
cc[a[a####ddddoooooodddd333a]accc]a]	chr1:186343996-186344309(-)$1	313	23	59	13.1078
ccc[ccc[ccc!!cccmmmmccc22ccc]ccc]ccc	chr12:57897925-57898167(+)$1	242	84	120	14.2571
ccc[eeeee!!eeeeellleeeee333eeeee]ccc	chr12:112587467-112587737(+)$1	270	222	258	12.2727
:ggggggg[ccc[cccmmmmccc]ccc22ggggggg	chr3:184041636-184041856(+)$1	220	138	174	12.2190
iiiiiiii####ddddmmmmdddd333iiiiiiiii	chr15:70344709-70344959(-)$1	250	47	83	13.9881
cc[ccc[ccc[ccc[ammmmaccc]ccc]ccc]ccc	chr5:132387645-132387984(+)$1	339	156	192	14.5555
cc!!eeeee[dddd[aooooooaddddeeeee]ccc	chr5:140998383-140998663(-)$1	280	22	58	11.0204
ccc!!ccc[ccc"""ccclllccc]ccc]ccc22cc	chr5:154169785-154170024(+)$1	239	167	203	12.2899
bb[ggggggg####ccclllccc4444ggggggg]b	chr12:49666622-49666877(+)$1	255	153	189	13.9547
c[eeeee[bb[ccc[aooooooacccbb]eeeeecc	chr21:47705838-47706073(-)$1	235	190	226	10.8727
[ccc!!dddd####ccclllccc4444dddd22ccc	chrX:153582883-153583090(-)$1	207	14	50	12.8260
ff####dddd[a[cccmmmmccc]a]dddd]fffff	chr7:74072166-74072494(+)$1	328	179	215	11.8674
cc[ddddccc[ddddnnnnnddddccc]dddd]ccc	chrX:153587875-153588091(-)$1	216	147	183	10.8443
ee[ccc[a[bb[ddddmmmmdddd]bb]a]ccceee	chr10:129924431-129924723(-)$1	292	4	40	10.9235

#otherMatches

#Seq PSSM
UUUUGCAUCCUCUCUCCUUUGGUGCAGGUGGAUGGA	chr15:90969241-90969447(+)$1	206	73	109	10.4646
UGGUGCAGAGGUGAGGUUUCCUGGACAUCUUUGUUA	chr3:184044656-184044871(+)$1	215	105	141	14.1213
AAUCCAUCAAAAGACAUUUUAAAAGUCGCUUGGUGG	chr1:19430537-19430769(-)$1	232	45	81	10.9807
UGUAUCCUGAAGAGGCAGAGCCCAAGCAGGGUCGCA	chr11:61077182-61077441(-)$1	259	114	150	12.4220
GUAAAGAGUUAUGAAAAUGAAGUUGUCAUGACAUUA	chr17:57737796-57738004(+)$1	208	153	189	11.0024
gcugccgccgccauggcugccAUGAUGGAUCGGAAG	chr10:32344882-32345194(-)$1	312	54	90	10.9637
ACAUCUUCCCCAAGGGCCCAUGGCGGGAAGGAGACA	chr12:6715389-6715647(-)$1	258	211	247	10.9932
GUUGACCUGCUAUCGCCCAGCGGGCAGGCCGACGCG	chr11:70189769-70190073(+)$1	304	137	173	10.4085
CCAUCAGGGGGAAGAGGCGUCCUGUUCUUCCUGGGG	chr4:68566666-68566969(-)$1	303	158	194	14.9121
UGUAUCCUGAAGAGGCAGAGCCCAAGCAGGGUCGCA	chr11:61077241-61077493(-)$1	252	166	202	12.4220
CAGCAUCCUGGAGGGCUGUGCCUUCCUCAAUGGGUC	chr19:18546835-18547096(-)$1	261	80	116	11.5159
UGGUGAAGGGCGUGCUGAUGGCCGGCCUCUACCCCA	chr3:47890609-47890859(+)$1	250	183	219	11.3099
CCGAGGGCCGACCGCUGCCGGCGGCGGGUCGUGGGG	chr8:17780457-17780729(+)$1	272	157	193	10.9477
GCCUUUUGCCAGCUUAUUAGUACUCUGGUGGAGAGC	chr7:135282683-135282933(+)$1	250	113	149	12.0163
CCUGGGAGGCGGCGCUGGGCCGGUGGCAAGCCCCCG	chr1:19536574-19536846(-)$1	272	41	77	11.6077
CAGUGGUCCUCCGCCGGCUACGGCGCUGCGUCACUG	chr2:109335884-109336141(+)$1	257	54	90	11.0229
CAGACGGGGUGGGUGGGGUGGCCCGGGCUCCUCCUG	chrX:153587999-153588209(-)$1	210	138	174	10.9916
CUCCGCGAUCCGCCCCAGCUGGGGCCUCGGAGCCGC	chr5:139781388-139781658(+)$1	270	222	258	11.9851
CAGGGCAGGGAAGCCGGGAGGCGGGCCCGGCCCGAG	chr8:48873455-48873674(+)$1	219	181	217	12.3731
UUCUUGUUAUGUUUUCCCCCAAAAGCAUAAUACAAA	chr7:158457122-158457357(-)$1	235	162	198	13.2505
AUGAACUUUGACCUGAGUCGGGGGAGAGGAUGGCAG	chr7:5270367-5270726(+)$1	359	282	318	12.2279
AGGGCUGGCUACACCUACACAGAUGCAUCAGCCCUG	chr7:158444883-158445118(-)$1	235	178	214	11.1867
ACAGCAGACAUGUCGGGGGUCCGGGGCCUGUCGCGG	chr5:218337-218632(+)$1	295	124	160	11.8043
GCAGCCAUUUGGUCCCAGGAGGAAAAGAGGCUGUGG	chr6:64345705-64345992(+)$1	287	181	217	11.4700
UGUGCCAGCAAGCCAGAGGUGACUGUGCGGCUGAAU	chr19:34949646-34949907(+)$1	261	111	147	10.7337
GUCCAGCAGUGUAAGCUCCAGCAAGCUGUUCUCCAG	chr11:61077764-61077990(-)$1	226	105	141	11.1621
GGCGGGAGGGCUCGGCUUCUCGACUGCCCGCCUCCG	chr10:105726885-105727157(+)$1	272	164	200	11.7308
AGCAGCCCCAGCCCAGCCCCGCUGAGGGAAGGGCUG	chr12:57883978-57884235(+)$1	257	131	167	11.2109
ACCUCUCGGGCUCCGGCUCCCCGCGCGCAAGAUGGC	chr16:23847391-23847669(+)$1	278	74	110	11.5129
CUGGUAGCGGCCUUGGGAUCCCUGGCUGCUGCCAAG	chr19:7707262-7707513(+)$1	251	208	244	13.0978
GGGUGCAGCGAACGCGACCCCGCGGGCUGCGGCCCG	chr10:129924330-129924590(-)$1	260	58	94	11.8626
AUUGAGCAGGUGGCAUUUCCUGCCAGCAUCCCUAUC	chr5:149424971-149425225(+)$1	254	132	168	10.4704
ACUUUGCCUUUUAUUGUUUUUAGUCCUUAAGUGCAA	chr10:105727244-105727530(+)$1	286	200	236	12.2419
CAGACGGGGUGGGUGGGGUGGCCCGGGCUCCUCCUG	chrX:153587905-153588114(-)$1	209	43	79	10.9916
GGGCGAGUGAGGGGCGCAGCCAUGAUCACCUCGGCC	chr2:231921487-231921795(+)$1	308	231	267	12.3807
UAGUAGUGGUGUCACAUAUUGUGCUGACUAGUUCCA	chr3:184041092-184041348(+)$1	256	34	70	11.6448
GGGGAAGUACGGAACGGGUACGUGAGGAGCAGCGCU	chr14:78082759-78083121(-)$1	362	265	301	13.5264
UCCCAGCUCCCAGCCCACCAUGGAUGCUCGGAUGCU	chr19:10247760-10248049(-)$1	289	16	52	13.0509
CCUUGGAGGCUGGGGCCCUGGUUCUGGCUGACCGAG	chr3:127335723-127335960(+)$1	237	173	209	11.2663
GCAGGGAGGCGGGAGCGGCGGCUGCGGCCUCAGGGC	chr3:25705625-25705905(-)$1	280	59	95	11.6835
UGACUCUCAGCGUCAGGCUACCAAAGAUGCUGGAAC	chr11:122930822-122931068(-)$1	246	133	169	11.0529
AGAGGCGGCGGCCCAGGCGUCUGGGUCCUGCUGGUC	chr1:186344168-186344431(-)$1	263	171	207	11.0348
UCUUUUUAGUGCCUGAGGCAGCUCUGGCUCGGAGAG	chr5:5422728-5423056(+)$1	328	99	135	11.4052
UCCAGCGCGGAGGGCGCUGUCCCCAAACUGGACAAG	chr16:89350992-89351253(-)$1	261	140	176	10.8530
AGCGUCUGCGACCGUCGUUUGAgucgucgcugccgc	chr9:35072375-35072665(-)$1	290	54	90	10.2972
GCGCGCGAGCCACCGAGCGAGGUGAUAGAGGCGGCG	chr1:186343996-186344309(-)$1	313	23	59	13.1078
GCCUCAGUGUAAAGUCUGCCGAUCAUGCCCUGUGGU	chr12:57897925-57898167(+)$1	242	84	120	14.2571
GGACUCAGCCAAGGCCGCAGGUCUACUGCUGGCUCC	chr12:112587467-112587737(+)$1	270	222	258	12.2727
CAGUGGGUUCUAAAUCUAAUGGUCUGGUUGCCCAUU	chr3:184041636-184041856(+)$1	220	138	174	12.2190
AGGGCAGAGAAUGCUGAGCUCAGUCCAUCUGCCCUC	chr15:70344709-70344959(-)$1	250	47	83	13.9881
CUUAGGCGCUCGCGUGGACACCGCAAGCCCCUCAGU	chr5:132387645-132387984(+)$1	339	156	192	14.5555
CGAGGCGUCGUCGUUGUAUAUUCAUGAGGCGCGCGC	chr5:140998383-140998663(-)$1	280	22	58	11.0204
AAUAACAGUGGGCAACCCAAGGGGACUUUCUGGAGU	chr5:154169785-154170024(+)$1	239	167	203	12.2899
GAGAGCUGUGUGCAUGCUGAGCAAUACCACAGCUGU	chr12:49666622-49666877(+)$1	255	153	189	13.9547
CUGUGCUGGGUGGAAGAUUAGGCUCCCCGGGCACGC	chr21:47705838-47706073(-)$1	235	190	226	10.8727
CUGGCUGGGGACCAGCCCUCGGUGCAGCCCCCUCUA	chrX:153582883-153583090(-)$1	207	14	50	12.8260
CCCCUCGGCACCCCCGGCCCCGGAGCUGCCUGGAGG	chr7:74072166-74072494(+)$1	328	179	215	11.8674
CGAGGGCUGCGACCCCUCCCGGGUGCGUGUCCACGG	chrX:153587875-153588091(-)$1	216	147	183	10.8443
UCGUUUGAAUUGGGCGGGCGCGCCGGGCUGGAAGAA	chr10:129924431-129924723(-)$1	292	4	40	10.9235

#DB
.(((.(((((((((.((...)).).))).))))).)	chr15:90969241-90969447(+)$1	1	73	109	10.4646
(((.((((((((((((...)))...)))))))))..	chr3:184044656-184044871(+)$1	1	105	141	14.1213
)(((((((((..(((.........)))..)))))))	chr1:19430537-19430769(-)$1	1	45	81	10.9807
((.((((((....(((...)))....))))))))))	chr11:61077182-61077441(-)$1	1	114	150	12.4220
(...((.(((((((.(((...))).))))))).)).	chr17:57737796-57738004(+)$1	1	153	189	11.0024
(((.((((((.(((((...))))).)))..))).))	chr10:32344882-32345194(-)$1	1	54	90	10.9637
.(.(((((((.....(((...)))))))))).)..)	chr12:6715389-6715647(-)$1	1	211	247	10.9932
((((.((((((..(((...))))))))).))))))(	chr11:70189769-70190073(+)$1	1	137	173	10.4085
((.((((((((((.(((...))).))))))))))))	chr4:68566666-68566969(-)$1	1	158	194	14.9121
((.((((((....(((...)))....))))))))))	chr11:61077241-61077493(-)$1	1	166	202	12.4220
(..(((...(((((((...)))))))...)))))))	chr19:18546835-18547096(-)$1	1	80	116	11.5159
.((((.(((.((.(((...))))).))).))))...	chr3:47890609-47890859(+)$1	1	183	219	11.3099
(((.((.(((.(((((...)))))))).)).)))))	chr8:17780457-17780729(+)$1	1	157	193	10.9477
((.(((((((((..((....))..))))))))).))	chr7:135282683-135282933(+)$1	1	113	149	12.0163
((.(((.((((.(((((...))))).)..)))))))	chr1:19536574-19536846(-)$1	1	41	77	11.6077
((((((.((..(((((....)))))..).)))))))	chr2:109335884-109336141(+)$1	1	54	90	11.0229
(((..(((((((((......))))..)))))..)))	chrX:153587999-153588209(-)$1	1	138	174	10.9916
(((((.(....(((((....)))))).)))))))))	chr5:139781388-139781658(+)$1	1	222	258	11.9851
(.((((.(((..(((....)))...))).))))..)	chr8:48873455-48873674(+)$1	1	181	217	12.3731
((..(((((((((((......)))))))))))..))	chr7:158457122-158457357(-)$1	1	162	198	13.2505
((...((((..(((......)))..)))))))))))	chr7:5270367-5270726(+)$1	1	282	318	12.2279
((((((((...((.((....)).))..)))))))))	chr7:158444883-158445118(-)$1	1	178	214	11.1867
.(.((((...(.((((....)))).).)))).)..)	chr5:218337-218632(+)$1	1	124	160	11.8043
((((((.(((..(((.....)))..))))))))).)	chr6:64345705-64345992(+)$1	1	181	217	11.4700
((.((((((..(((((......))).)).))))...	chr19:34949646-34949907(+)$1	1	111	147	10.7337
(...((((((....((....))..))))))...)))	chr11:61077764-61077990(-)$1	1	105	141	11.1621
((((((..((.(((......))))).))))))).))	chr10:105726885-105727157(+)$1	1	164	200	11.7308
.(((((((...((((((...)))).))...))))))	chr12:57883978-57884235(+)$1	1	131	167	11.2109
((((((.(.((..(((....))).)).).))).)).	chr16:23847391-23847669(+)$1	1	74	110	11.5129
.(((((((((((..((....)).))))))))))).)	chr19:7707262-7707513(+)$1	1	208	244	13.0978
((.((((((...((((....)))).)))))).))))	chr10:129924330-129924590(-)$1	1	58	94	11.8626
((.(.(..(.(((((.....))))).)..).).)))	chr5:149424971-149425225(+)$1	1	132	168	10.4704
.(((((((((..((((....))))....))).))))	chr10:105727244-105727530(+)$1	1	200	236	12.2419
(((..(((((((((......))))..)))))..)))	chrX:153587905-153588114(-)$1	1	43	79	10.9916
((.(((((((..(((...)))....))).)))).))	chr2:231921487-231921795(+)$1	1	231	267	12.3807
.(.((((.(.(.((((...)))))).)))).)..))	chr3:184041092-184041348(+)$1	1	34	70	11.6448
((.(..((.(...(((....)))...).))..).))	chr14:78082759-78083121(-)$1	1	265	301	13.5264
...(((((((.((((((...)))..))).))).)))	chr19:10247760-10248049(-)$1	1	16	52	13.0509
((((((.(((((((((....)))))))))..)))))	chr3:127335723-127335960(+)$1	1	173	209	11.2663
((((((((((.(.(((....))).).)))))....)	chr3:25705625-25705905(-)$1	1	59	95	11.6835
((..((.(((((((.((...))...)))))))))..	chr11:122930822-122931068(-)$1	1	133	169	11.0529
((((((((.(((((((....))))))))))))..))	chr1:186344168-186344431(-)$1	1	171	207	11.0348
.((((((.(.(((.(((....))).))).)))))))	chr5:5422728-5423056(+)$1	1	99	135	11.4052
(((((...((.((((...))))))...))))))).)	chr16:89350992-89351253(-)$1	1	140	176	10.8530
((((.(.(((((.(.(......).)))))).).)))	chr9:35072375-35072665(-)$1	1	54	90	10.2972
((.(.(....((((......))))...).)))).).	chr1:186343996-186344309(-)$1	1	23	59	13.1078
(((.(((.(((..(((....)))..))).))).)))	chr12:57897925-57898167(+)$1	1	84	120	14.2571
(((.(((((..(((((...)))))...))))).)))	chr12:112587467-112587737(+)$1	1	222	258	12.2727
.(((((((.(((.(((....))).)))..)))))))	chr3:184041636-184041856(+)$1	1	138	174	12.2190
((((((((....((((....))))...)))))))))	chr15:70344709-70344959(-)$1	1	47	83	13.9881
((.(((.(((.(((.(....)))).))).))).)))	chr5:132387645-132387984(+)$1	1	156	192	14.5555
((..(((((.((((.(......)))))))))).)))	chr5:140998383-140998663(-)$1	1	22	58	11.0204
(((..(((.(((...(((...))).))).)))..))	chr5:154169785-154170024(+)$1	1	167	203	12.2899
((.(((((((....(((...)))....))))))).)	chr12:49666622-49666877(+)$1	1	153	189	13.9547
(.(((((.((.(((.(......)))))).)))))))	chr21:47705838-47706073(-)$1	1	190	226	10.8727
.(((..((((....(((...)))....))))..)))	chrX:153582883-153583090(-)$1	1	14	50	12.8260
((....((((.(.(((....))).).)))).)))))	chr7:74072166-74072494(+)$1	1	179	215	11.8674
((.(((((((.((((.....))))))).)))).)))	chrX:153587875-153588091(-)$1	1	147	183	10.8443
((.(((.(.((.((((....)))).)).).))))))	chr10:129924431-129924723(-)$1	1	4	40	10.9235

#PSSM
c : 0.28	f : 0.13	d : 0.13	b : 0.08	i : 0.06	g : 0.05	[ : 0.05	" : 0.05	! : 0.03	: : 0.03	e : 0.03	% : 0.01	# : 0.01	
c : 0.25	f : 0.16	d : 0.13	i : 0.08	g : 0.08	b : 0.06	" : 0.05	a : 0.05	[ : 0.03	e : 0.03	! : 0.01	= : 0.01	
[ : 0.30	c : 0.13	f : 0.10	i : 0.08	d : 0.08	" : 0.06	! : 0.06	g : 0.06	e : 0.03	b : 0.01	= : 0.01	# : 0.01	
d : 0.15	f : 0.13	c : 0.11	g : 0.10	! : 0.10	[ : 0.08	i : 0.08	" : 0.05	a : 0.05	e : 0.05	= : 0.03	b : 0.01	# : 0.01	
f : 0.15	c : 0.11	d : 0.11	i : 0.10	g : 0.10	[ : 0.08	! : 0.08	e : 0.08	b : 0.06	= : 0.05	" : 0.01	# : 0.01	
f : 0.16	e : 0.13	c : 0.13	d : 0.13	i : 0.08	g : 0.08	b : 0.05	= : 0.05	a : 0.05	[ : 0.03	! : 0.03	" : 0.01	# : 0.01	
[ : 0.20	d : 0.15	e : 0.13	f : 0.11	i : 0.08	c : 0.06	g : 0.06	= : 0.05	" : 0.03	! : 0.03	a : 0.01	b : 0.01	# : 0.01	
c : 0.20	e : 0.13	i : 0.10	g : 0.10	f : 0.08	d : 0.06	[ : 0.06	= : 0.05	" : 0.05	a : 0.05	# : 0.03	! : 0.03	b : 0.01	
c : 0.20	e : 0.11	[ : 0.10	f : 0.08	i : 0.06	g : 0.06	" : 0.06	a : 0.06	d : 0.06	= : 0.05	# : 0.05	b : 0.05	
c : 0.22	g : 0.10	e : 0.08	# : 0.08	[ : 0.08	b : 0.08	i : 0.06	! : 0.06	" : 0.06	= : 0.05	f : 0.03	d : 0.03	a : 0.01	
[ : 0.16	! : 0.15	# : 0.11	c : 0.08	g : 0.06	d : 0.06	" : 0.06	i : 0.05	= : 0.05	b : 0.05	a : 0.05	e : 0.03	$ : 0.01	f : 0.01	
c : 0.15	! : 0.13	e : 0.11	# : 0.10	d : 0.10	g : 0.06	b : 0.06	[ : 0.06	i : 0.05	= : 0.05	" : 0.03	a : 0.03	$ : 0.01	
d : 0.20	c : 0.18	e : 0.11	# : 0.08	! : 0.08	[ : 0.08	g : 0.06	b : 0.05	i : 0.03	= : 0.03	" : 0.03	$ : 0.01	
c : 0.35	d : 0.22	e : 0.11	g : 0.06	[ : 0.05	# : 0.05	a : 0.03	! : 0.03	$ : 0.01	= : 0.01	i : 0.01	" : 0.01	
c : 0.35	d : 0.15	[ : 0.11	e : 0.11	o : 0.08	b : 0.06	g : 0.03	$ : 0.01	= : 0.01	i : 0.01	" : 0.01	
c : 0.33	d : 0.11	b : 0.10	e : 0.10	o : 0.10	a : 0.06	n : 0.05	g : 0.03	l : 0.03	r : 0.01	m : 0.01	i : 0.01	
m : 0.35	l : 0.20	o : 0.16	c : 0.13	n : 0.05	b : 0.03	r : 0.01	e : 0.01	d : 0.01	
m : 0.37	l : 0.33	o : 0.16	c : 0.05	n : 0.05	r : 0.01	
m : 0.37	l : 0.35	o : 0.16	n : 0.05	r : 0.01	c : 0.01	d : 0.01	
m : 0.35	l : 0.18	o : 0.16	c : 0.11	e : 0.05	n : 0.05	d : 0.03	r : 0.01	g : 0.01	
c : 0.33	d : 0.20	e : 0.11	b : 0.10	o : 0.08	l : 0.05	g : 0.03	r : 0.01	i : 0.01	m : 0.01	a : 0.01	
c : 0.40	d : 0.20	e : 0.11	b : 0.10	o : 0.06	g : 0.03	r : 0.01	= : 0.01	4 : 0.01	i : 0.01	
c : 0.32	d : 0.18	e : 0.11	] : 0.05	3 : 0.05	4 : 0.05	a : 0.05	g : 0.03	b : 0.03	2 : 0.03	r : 0.01	f : 0.01	= : 0.01	i : 0.01	
d : 0.18	c : 0.11	e : 0.11	] : 0.10	2 : 0.10	4 : 0.08	3 : 0.06	b : 0.06	a : 0.03	g : 0.03	= : 0.03	r : 0.01	f : 0.01	i : 0.01	
] : 0.18	3 : 0.13	c : 0.10	4 : 0.10	2 : 0.10	e : 0.06	a : 0.06	g : 0.05	= : 0.05	b : 0.05	f : 0.03	i : 0.03	d : 0.01	
c : 0.27	] : 0.11	4 : 0.08	g : 0.08	3 : 0.08	2 : 0.06	i : 0.05	f : 0.05	= : 0.05	b : 0.05	a : 0.03	d : 0.03	e : 0.01	
c : 0.25	f : 0.08	g : 0.08	3 : 0.08	e : 0.06	d : 0.06	b : 0.06	i : 0.05	= : 0.05	a : 0.05	] : 0.05	4 : 0.05	2 : 0.03	
c : 0.18	e : 0.11	i : 0.10	g : 0.10	f : 0.08	d : 0.08	2 : 0.06	] : 0.06	= : 0.05	a : 0.05	3 : 0.03	b : 0.03	4 : 0.01	
] : 0.25	e : 0.11	i : 0.10	g : 0.10	d : 0.10	2 : 0.08	f : 0.08	= : 0.05	3 : 0.03	b : 0.03	c : 0.01	a : 0.01	
d : 0.16	e : 0.15	g : 0.13	c : 0.13	i : 0.10	f : 0.08	a : 0.06	= : 0.05	2 : 0.03	b : 0.03	3 : 0.01	] : 0.01	
c : 0.18	g : 0.15	e : 0.13	d : 0.13	i : 0.10	f : 0.10	] : 0.08	= : 0.05	2 : 0.03	3 : 0.01	
c : 0.16	g : 0.13	i : 0.11	f : 0.11	d : 0.10	e : 0.08	] : 0.06	2 : 0.06	= : 0.05	a : 0.05	3 : 0.01	4 : 0.01	
] : 0.16	i : 0.11	f : 0.11	2 : 0.11	d : 0.10	g : 0.10	c : 0.06	b : 0.05	a : 0.05	e : 0.03	= : 0.03	3 : 0.01	4 : 0.01	
c : 0.16	f : 0.13	2 : 0.11	i : 0.10	b : 0.10	] : 0.10	g : 0.08	e : 0.05	d : 0.05	= : 0.03	4 : 0.03	3 : 0.01	
c : 0.27	f : 0.16	d : 0.10	] : 0.08	i : 0.08	b : 0.06	2 : 0.06	g : 0.05	3 : 0.03	4 : 0.03	a : 0.01	e : 0.01	
c : 0.28	f : 0.20	d : 0.11	i : 0.10	g : 0.08	3 : 0.05	b : 0.05	] : 0.03	e : 0.03	4 : 0.01	2 : 0.01	

#score	700.6122030802069
#seq	59
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF336WDV_FUS_CDS_m1_run1.txt

#BEAR
c:ggggggg!!aiiiiiiiii[dddd"""bbvv	chr14:31647130-31647383(-)$1	253	84	117	12.9082
c!!ffffff[iiiiiiiii####ccc"""bb[d	chr17:48545764-48546031(+)$1	267	158	191	15.5884
###ccc!!ggggggg[ccc[bb"""ccc[bb$$	chr14:32546526-32546800(+)$1	274	77	110	12.1221
33ffffff===========nnnnn=========	chr11:18425235-18425451(+)$1	216	106	139	12.2156
33ffffff===========nnnnn=========	chr11:18425214-18425435(+)$1	221	127	160	12.2156
ee[cccccc[eeeee[bb^^^^^^^^^^^^^^^	chr2:101437396-101437653(+)$1	257	184	217	11.9139
cc[ffffff[ccc!!ffffff!!cccbb[bb[b	chr19:2270253-2270568(+)$1	315	145	178	12.4013
dd[ggggggg!!==========[ffffff++++	chr6:26285547-26285800(-)$1	253	18	51	11.8940
ca[bb[ccc$$$$$dddd[a!!ccciiiiiiii	chr10:696824-697131(-)$1	307	196	229	10.4587
bb####ggggggg[==========bb[a[bbll	chr22:29684629-29684877(+)$1	248	107	140	13.2947
bb[cccggggggg!!dddd!!ffffff!!bbqq	chr2:62100036-62100316(-)$1	280	90	123	11.7029
bb[ffffff####eeeee^^^^^^^^^^^^^^^	chr17:36453084-36453371(+)$1	287	66	99	13.6964

#otherMatches

#Seq PSSM
CACUUUGUAAUCGUUUGGUUGUAGUUGAACUUA	chr14:31647130-31647383(-)$1	253	84	117	12.9082
GUGCUGCAGGUGCAAUGACACGAGGUUCGGCAU	chr17:48545764-48546031(+)$1	267	158	191	15.5884
gccgUUGAGGAGGAGACGGAGGAGACCGACGUU	chr14:32546526-32546800(+)$1	274	77	110	12.1221
AAGCAGGUGGUUGAGAGGUAAUAAAUCUUUCAA	chr11:18425235-18425451(+)$1	216	106	139	12.2156
AAGCAGGUGGUUGAGAGGUAAUAAAUCUUUCAA	chr11:18425214-18425435(+)$1	221	127	160	12.2156
AACCAGGGAAGGGACAGGCACCACCCGGCUAAA	chr2:101437396-101437653(+)$1	257	184	217	11.9139
GGACCUCGUGGGCCCCGUUUUUCGCCCCUGAGC	chr19:2270253-2270568(+)$1	315	145	178	12.4013
GUUGCUUUGCCUUGGCGUUUAGGUUUCUUAAGU	chr6:26285547-26285800(-)$1	253	18	51	11.8940
GGGAGAGAUGGAGAGAGGGCAGUGCCGGCUUUG	chr10:696824-697131(-)$1	307	196	229	10.4587
GAGCAGAGGUGGGCGGGGAGGAGGACGCGGUGG	chr22:29684629-29684877(+)$1	248	107	140	13.2947
GCUCAUAUUGACCAAUUUACUGCUGACAUGCUG	chr2:62100036-62100316(-)$1	280	90	123	11.7029
UGGCAGCCCCCAUACCUCAAGGGUUCUCUUGUU	chr17:36453084-36453371(+)$1	287	66	99	13.6964

#DB
).(((((((..((((((((((.((((...((..	chr14:31647130-31647383(-)$1	1	84	117	12.9082
(..((((((.(((((((((....(((...((.(	chr17:48545764-48546031(+)$1	1	158	191	15.5884
...(((..(((((((.(((.((...(((.((..	chr14:32546526-32546800(+)$1	1	77	110	12.1221
..))))))(((((((((((.....)))))))))	chr11:18425235-18425451(+)$1	1	106	139	12.2156
..))))))(((((((((((.....)))))))))	chr11:18425214-18425435(+)$1	1	127	160	12.2156
((.((((((.(((((.((...............	chr2:101437396-101437653(+)$1	1	184	217	11.9139
((.((((((.(((..((((((..(((((.((.(	chr19:2270253-2270568(+)$1	1	145	178	12.4013
((.(((((((..((((((((((.((((((....	chr6:26285547-26285800(-)$1	1	18	51	11.8940
)(.((.(((.....((((.(..(((((((((((	chr10:696824-697131(-)$1	1	196	229	10.4587
((....(((((((.((((((((((((.(.((..	chr22:29684629-29684877(+)$1	1	107	140	13.2947
((.((((((((((..((((..((((((..((..	chr2:62100036-62100316(-)$1	1	90	123	11.7029
((.((((((....(((((...............	chr17:36453084-36453371(+)$1	1	66	99	13.6964

#PSSM
c : 0.33	b : 0.25	3 : 0.16	# : 0.08	e : 0.08	d : 0.08	
b : 0.25	3 : 0.16	: : 0.08	! : 0.08	# : 0.08	e : 0.08	c : 0.08	d : 0.08	a : 0.08	
[ : 0.49	# : 0.16	f : 0.16	g : 0.08	! : 0.08	
f : 0.41	c : 0.25	g : 0.16	b : 0.08	# : 0.08	
f : 0.41	c : 0.25	g : 0.16	b : 0.08	# : 0.08	
f : 0.41	c : 0.25	g : 0.16	[ : 0.08	# : 0.08	
f : 0.41	g : 0.33	c : 0.16	! : 0.08	
f : 0.41	g : 0.33	c : 0.16	! : 0.08	
g : 0.41	f : 0.25	= : 0.16	c : 0.16	
g : 0.33	[ : 0.25	= : 0.16	! : 0.08	$ : 0.08	# : 0.08	
g : 0.25	! : 0.16	= : 0.16	i : 0.08	e : 0.08	c : 0.08	$ : 0.08	# : 0.08	
g : 0.25	= : 0.16	a : 0.08	i : 0.08	e : 0.08	c : 0.08	! : 0.08	$ : 0.08	# : 0.08	
g : 0.25	= : 0.25	i : 0.16	e : 0.08	c : 0.08	$ : 0.08	# : 0.08	
= : 0.25	i : 0.16	e : 0.16	! : 0.16	g : 0.08	$ : 0.08	[ : 0.08	
= : 0.33	i : 0.16	e : 0.16	! : 0.16	g : 0.08	d : 0.08	
= : 0.33	i : 0.16	[ : 0.16	d : 0.16	f : 0.08	e : 0.08	
= : 0.33	i : 0.16	d : 0.16	c : 0.08	b : 0.08	f : 0.08	e : 0.08	
= : 0.33	i : 0.16	d : 0.16	c : 0.08	b : 0.08	f : 0.08	e : 0.08	
= : 0.33	i : 0.16	^ : 0.16	c : 0.08	f : 0.08	[ : 0.08	d : 0.08	
n : 0.16	^ : 0.16	= : 0.16	i : 0.08	# : 0.08	[ : 0.08	f : 0.08	a : 0.08	! : 0.08	
n : 0.16	^ : 0.16	= : 0.16	! : 0.16	i : 0.08	# : 0.08	b : 0.08	f : 0.08	
n : 0.16	^ : 0.16	! : 0.16	= : 0.16	[ : 0.08	# : 0.08	b : 0.08	f : 0.08	
n : 0.16	^ : 0.16	d : 0.08	# : 0.08	" : 0.08	! : 0.08	[ : 0.08	c : 0.08	= : 0.08	f : 0.08	
c : 0.25	n : 0.16	^ : 0.16	f : 0.16	d : 0.08	" : 0.08	= : 0.08	
c : 0.25	= : 0.16	^ : 0.16	f : 0.16	d : 0.08	" : 0.08	b : 0.08	
c : 0.25	= : 0.16	^ : 0.16	f : 0.16	d : 0.08	i : 0.08	b : 0.08	
" : 0.16	= : 0.16	^ : 0.16	f : 0.16	c : 0.08	b : 0.08	i : 0.08	[ : 0.08	
" : 0.16	= : 0.16	^ : 0.16	c : 0.08	b : 0.08	f : 0.08	i : 0.08	a : 0.08	! : 0.08	
[ : 0.25	" : 0.16	= : 0.16	^ : 0.16	f : 0.08	i : 0.08	! : 0.08	
b : 0.49	= : 0.16	^ : 0.16	+ : 0.08	i : 0.08	
b : 0.49	= : 0.16	^ : 0.16	+ : 0.08	i : 0.08	
[ : 0.16	= : 0.16	^ : 0.16	v : 0.08	$ : 0.08	+ : 0.08	i : 0.08	l : 0.08	q : 0.08	
= : 0.16	^ : 0.16	v : 0.08	d : 0.08	$ : 0.08	b : 0.08	+ : 0.08	i : 0.08	l : 0.08	q : 0.08	

#score	150.4123777791917
#seq	12
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF579NNP_ZNF800_UTR_m3_run2.txt

#BEAR
ffffffqqqqqqqqfffff	chr12:14944010-14944299(-)$1	289	175	194	13.9788
======qqqqqqqq=====	chr5:140032553-140032832(+)$1	279	187	206	14.8082
ffffffqqqqqqqqfffff	chrX:53611043-53611309(-)$1	266	16	35	13.9788
ffffffqqqqqqqqfffff	chr8:98731176-98731415(+)$1	239	51	70	13.9788
!a[cccqqqqqqqqccc]a	chr3:42685324-42685592(+)$1	268	86	105	14.6370
ggggggqqqqqqqqggggg	chr20:42089053-42089314(+)$1	261	1	20	14.6675
:eeeeeqqqqqqqqeeeee	chr22:20114375-20114646(+)$1	271	101	120	13.3475
ffffffqqqqqqqqfffff	chr3:184039643-184039904(+)$1	261	212	231	13.9788
dd!!bbqqqqqqqqbb]dd	chr5:149779345-149779660(+)$1	315	114	133	13.3718
eee!!aqqqqqqqqa22ee	chr7:5792407-5792690(-)$1	283	164	183	14.0665
eeee[aqqqqqqqqa]eee	chr5:180666042-180666280(-)$1	238	127	146	14.4913
eeddddqqqqqqqqdddd]	chrX:49370495-49370776(+)$1	281	245	264	13.6388
fffcccqqqqqqqqccc:f	chr16:11931856-11932071(-)$1	215	116	135	13.4959
ggggggqqqqqqqqggggg	chr7:102953291-102953637(-)$1	346	297	316	14.6675
ffff[aqqqqqqqqa]fff	chr5:33458639-33458870(+)$1	231	50	69	14.2882
Deeeeeqqqqqqqqeeeee	chr7:35942692-35942926(+)$1	234	10	29	13.2156
cc[cccqqqqqqqqccc]c	chr2:217364649-217364854(+)$1	205	63	82	14.7634
ccc[bbqqqqqqqqbbccc	chr11:57093767-57094040(-)$1	273	132	151	13.7904
ddd[bbqqqqqqqqbbddd	chr8:144661837-144662101(-)$1	264	123	142	13.1560
d[ddddqqqqqqqqdddd]	chr15:89790808-89791061(+)$1	253	48	67	13.5541
ffffffqqqqqqqqfffff	chr10:70545792-70546076(+)$1	284	213	232	13.9788
eddddaqqqqqqqqa]ddd	chr7:66240137-66240474(+)$1	337	101	120	13.6890
ddddddqqqqqqqqdddd4	chr11:3023669-3023907(-)$1	238	162	181	13.3423
ffffffqqqqqqqqfffff	chr20:2638821-2639057(+)$1	236	117	136	13.9788
b"""bbqqqqqqqqbb333	chr11:110102533-110102827(-)$1	294	189	208	13.5091
fffcccqqqqqqqqccc]f	chr1:28564266-28564519(+)$1	253	3	22	14.6085
dd"""aqqqqqqqqa22dd	chr14:21698377-21698625(-)$1	248	110	129	13.3367
fccc[aqqqqqqqqa]ccc	chr16:89953999-89954224(+)$1	225	116	135	14.4653
ee!!bbqqqqqqqqbb]ee	chr5:179153585-179153848(+)$1	263	137	156	13.8546
cc!!bbqqqqqqqqbb22c	chr12:53421858-53422072(+)$1	214	138	157	13.5127
ggggggqqqqqqqqggggg	chr22:38352681-38352951(+)$1	270	215	234	14.6675
ccccccqqqqqqqqccc]c	chr15:66791644-66791857(-)$1	213	87	106	14.6421
[eeeeeqqqqqqqqeeeee	chr14:68126392-68126740(-)$1	348	289	308	14.3205
!eeeeeqqqqqqqqeeeee	chr3:185636052-185636309(-)$1	257	122	141	14.3322
ceeeeeqqqqqqqqeeeee	chr1:28527601-28527983(-)$1	382	88	107	14.2943
"eeeeeqqqqqqqqeeeee	chr6:26158296-26158612(+)$1	316	279	298	14.2544
fffcccqqqqqqqqccc]f	chr12:124017849-124018153(-)$1	304	276	295	14.6085
##ddddqqqqqqqqdddd2	chr15:45007577-45007987(+)$1	410	72	91	13.2791
ggggggqqqqqqqqggggg	chr15:60646252-60646515(-)$1	263	57	76	14.6675
e[ddddqqqqqqqqdddd]	chr12:76444210-76444454(-)$1	244	5	24	13.6308
!eeeeeqqqqqqqqeeeee	chr12:76442912-76443131(-)$1	219	191	210	14.3322
ffffffqqqqqqqqfffff	chr19:46856904-46857183(+)$1	279	24	43	13.9788
======qqqqqqqq=====	chr8:56985687-56985931(-)$1	244	114	133	14.8082
ccc[bbqqqqqqqqbbccc	chr14:21679461-21679746(-)$1	285	64	83	13.7904
:eeeeeqqqqqqqqeeeee	chrX:135959970-135960247(-)$1	277	56	75	13.3475
:eeeeeqqqqqqqqeeeee	chr3:25653911-25654301(-)$1	390	114	133	13.3475
:eeeeeqqqqqqqqeeeee	chr1:8934852-8935075(-)$1	223	132	151	13.3475
e!!cccqqqqqqqqccc22	chr10:15183356-15183657(-)$1	301	227	246	14.3193
======qqqqqqqq=====	chr19:10270958-10271166(-)$1	208	127	146	14.8082
======qqqqqqqq=====	chr2:172848120-172848378(+)$1	258	165	184	14.8082
$$ddddqqqqqqqqdddd2	chr17:38792082-38792440(-)$1	358	29	48	12.9227
eeecccqqqqqqqqccc33	chr19:4423703-4423936(+)$1	233	180	199	14.7308
eeecccqqqqqqqqccc44	chr12:56189739-56189962(-)$1	223	22	41	14.5525
ggggggqqqqqqqqggggg	chr2:198361786-198362109(-)$1	323	283	302	14.6675
cc"""aqqqqqqqqa333c	chr15:69072325-69072570(-)$1	245	104	123	14.3787
!ccc[aqqqqqqqqa]ccc	chr22:20939040-20939257(+)$1	217	77	96	14.5403
!ccc[aqqqqqqqqa]ccc	chr22:20939057-20939275(+)$1	218	60	79	14.5403
=eeeeeqqqqqqqqeeeee	chr2:172582093-172582324(+)$1	231	96	115	14.3089
ggggggqqqqqqqqggggg	chr5:179153579-179153783(+)$1	204	30	49	14.6675
bb[cccqqqqqqqqccc]b	chr3:122864864-122865186(+)$1	322	58	77	13.9124
ccc[bbqqqqqqqqbb]cc	chr12:53428321-53428595(+)$1	274	162	181	13.7210
ggggggqqqqqqqqggggg	chr5:149779269-149779545(+)$1	276	26	45	14.6675
cc[cccqqqqqqqqccc]c	chr9:134342923-134343183(+)$1	260	154	173	14.7634
e!!cccqqqqqqqqccc33	chr19:50000679-50000895(+)$1	216	135	154	14.7531
bbddddqqqqqqqqdddd]	chr19:19603355-19603622(+)$1	267	151	170	13.1531
feeeeeqqqqqqqqeeeee	chr11:3023096-3023384(-)$1	288	73	92	14.2572
ffffffqqqqqqqqfffff	chr15:72499400-72499693(-)$1	293	154	173	13.9788
gggcccqqqqqqqqccc22	chr1:11849721-11849993(-)$1	272	218	237	14.4020
ggggggqqqqqqqqggggg	chr13:107220068-107220377(-)$1	309	212	231	14.6675
ggggggqqqqqqqqggggg	chr3:40503331-40503541(+)$1	210	50	69	14.6675

#otherMatches

#Seq PSSM
GCCAUGAUGCUUCGUAUGG	chr12:14944010-14944299(-)$1	289	175	194	13.9788
GGGAACAGGGCAUGGUUCC	chr5:140032553-140032832(+)$1	279	187	206	14.8082
ACAGGGAACCGACGCCCUG	chrX:53611043-53611309(-)$1	266	16	35	13.9788
AUGAAGAAUGAAUGCUUUA	chr8:98731176-98731415(+)$1	239	51	70	13.9788
GCUACUAUAGCAGGAGUCG	chr3:42685324-42685592(+)$1	268	86	105	14.6370
AAAGAAAAACAUUAUUCUU	chr20:42089053-42089314(+)$1	261	1	20	14.6675
GGAUCAGGCAAAAAUGAUC	chr22:20114375-20114646(+)$1	271	101	120	13.3475
UGUCUCAGAAUUUGGAGGC	chr3:184039643-184039904(+)$1	261	212	231	13.9788
UCCCUCGCUCCACAGAAGA	chr5:149779345-149779660(+)$1	315	114	133	13.3718
CUCAGCAGCAUGAAGAAGA	chr7:5792407-5792690(-)$1	283	164	183	14.0665
CUGAAGACCAACCACAUUG	chr5:180666042-180666280(-)$1	238	127	146	14.4913
ucuagcuauuugaugcugu	chrX:49370495-49370776(+)$1	281	245	264	13.6388
ACAGGAAAGAAGUCUCCAG	chr16:11931856-11932071(-)$1	215	116	135	13.4959
AUAUAGCUCAUAUUUUAUG	chr7:102953291-102953637(-)$1	346	297	316	14.6675
UUCAUGAACUCAGCCCUGG	chr5:33458639-33458870(+)$1	231	50	69	14.2882
GCAAAUGAAAAAGAAUUUG	chr7:35942692-35942926(+)$1	234	10	29	13.2156
UUCCUGCAUGAAGACAGUG	chr2:217364649-217364854(+)$1	205	63	82	14.7634
GGACUCAGCGUCAGGAUCC	chr11:57093767-57094040(-)$1	273	132	151	13.7904
CUUUCAACAAGAUCUGAAG	chr8:144661837-144662101(-)$1	264	123	142	13.1560
UAGUUCUGUGAUAUGAGCA	chr15:89790808-89791061(+)$1	253	48	67	13.5541
AUGGUGAUAUCUUACAUCA	chr10:70545792-70546076(+)$1	284	213	232	13.9788
UUUGCCAGCAGUCAGAGCA	chr7:66240137-66240474(+)$1	337	101	120	13.6890
GGCUCUACUGGGCAGGAGU	chr11:3023669-3023907(-)$1	238	162	181	13.3423
AGAAUGCAAAUGGACAUUC	chr20:2638821-2639057(+)$1	236	117	136	13.9788
CAAGGCAAUACAAAGCAGC	chr11:110102533-110102827(-)$1	294	189	208	13.5091
AGACAUUACAGGUUAUGCU	chr1:28564266-28564519(+)$1	253	3	22	14.6085
GACUUGGACUAUGACUUUC	chr14:21698377-21698625(-)$1	248	110	129	13.3367
GGGAGCAAAGGUAAGGUCC	chr16:89953999-89954224(+)$1	225	116	135	14.4653
UCAGUCAAGAGGAGGAAGA	chr5:179153585-179153848(+)$1	263	137	156	13.8546
UCAUGGAGCAGAAACUGGG	chr12:53421858-53422072(+)$1	214	138	157	13.5127
AUCGUCUGACAGGUGAUGA	chr22:38352681-38352951(+)$1	270	215	234	14.6675
CAGAGGAGAAGAAGCCUGC	chr15:66791644-66791857(-)$1	213	87	106	14.6421
UAUGGUAAGUUUUAGCUGU	chr14:68126392-68126740(-)$1	348	289	308	14.3205
CAGAUCACGUUCCAGAUCU	chr3:185636052-185636309(-)$1	257	122	141	14.3322
UCUUUUGUACUUAGGAAAG	chr1:28527601-28527983(-)$1	382	88	107	14.2943
UGGGGAUCAUGAAUUCCUU	chr6:26158296-26158612(+)$1	316	279	298	14.2544
GCGCCUCAUGCCCAAGGUC	chr12:124017849-124018153(-)$1	304	276	295	14.6085
CAUCCAGCAGAGAAUGGAA	chr15:45007577-45007987(+)$1	410	72	91	13.2791
AAUACACAAAGAAAUGUAU	chr15:60646252-60646515(-)$1	263	57	76	14.6675
UUUCCUUUAAAAAUAGGAU	chr12:76444210-76444454(-)$1	244	5	24	13.6308
AGCUAAAGUAAGAGUUGGU	chr12:76442912-76443131(-)$1	219	191	210	14.3322
CUGGGCGUCACCCAGCCCA	chr19:46856904-46857183(+)$1	279	24	43	13.9788
UACAAGAAAAACUCCUUGU	chr8:56985687-56985931(-)$1	244	114	133	14.8082
CUCCGUGAAGAAAGAUGAG	chr14:21679461-21679746(-)$1	285	64	83	13.7904
AGUGGUAGACGUGGACCGC	chrX:135959970-135960247(-)$1	277	56	75	13.3475
AAGAACGAGAAGAUGUUCU	chr3:25653911-25654301(-)$1	390	114	133	13.3475
AGGGAGAUCUUUGACUCUC	chr1:8934852-8935075(-)$1	223	132	151	13.3475
GCCUUCGAAAGUGAGAGCU	chr10:15183356-15183657(-)$1	301	227	246	14.3193
UUAUCGAAAGCAGAUGGUA	chr19:10270958-10271166(-)$1	208	127	146	14.8082
AGGAAGCUUGCAAAUUUUC	chr2:172848120-172848378(+)$1	258	165	184	14.8082
ucugcauuauaaccugcaa	chr17:38792082-38792440(-)$1	358	29	48	12.9227
CUGCCUUUGCUUUUGGGUU	chr19:4423703-4423936(+)$1	233	180	199	14.7308
CAGGUGAAUUCUUACACAU	chr12:56189739-56189962(-)$1	223	22	41	14.5525
CAGUGUGCUUUAAGGCAUU	chr2:198361786-198362109(-)$1	323	283	302	14.6675
AGAAGCGAAAACGAGAACC	chr15:69072325-69072570(-)$1	245	104	123	14.3787
UGACCGUGCCCAUCCUGUC	chr22:20939040-20939257(+)$1	217	77	96	14.5403
UGACCGUGCCCAUCCUGUC	chr22:20939057-20939275(+)$1	218	60	79	14.5403
ACUUUAAAGAAAGAUGAGG	chr2:172582093-172582324(+)$1	231	96	115	14.3089
UGUGUUCUAAUGCUAAUAU	chr5:179153579-179153783(+)$1	204	30	49	14.6675
GGUUGGCCUUUCCCCCAUC	chr3:122864864-122865186(+)$1	322	58	77	13.9124
UCUAGCAGAAGUAAGUCAG	chr12:53428321-53428595(+)$1	274	162	181	13.7210
GAGAUGCCAGAUUUCAUUU	chr5:149779269-149779545(+)$1	276	26	45	14.6675
GAGUUCAAGUAUCAGAAGU	chr9:134342923-134343183(+)$1	260	154	173	14.7634
CACUGGUAAUGUGUCCAUU	chr19:50000679-50000895(+)$1	216	135	154	14.7531
GCCACCGCCCAGAAGGUGC	chr19:19603355-19603622(+)$1	267	151	170	13.1531
AGUGACUGUGCCGUGUUGC	chr11:3023096-3023384(-)$1	288	73	92	14.2572
GUCUUCCUUGCUCAGAAGA	chr15:72499400-72499693(-)$1	293	154	173	13.9788
UGUUUCGUGUAGUGGAAGA	chr1:11849721-11849993(-)$1	272	218	237	14.4020
GAGCGCGUGCGGAAGCGUU	chr13:107220068-107220377(-)$1	309	212	231	14.6675
UAUUGUAUGUAUACACAAU	chr3:40503331-40503541(+)$1	210	50	69	14.6675

#DB
((((((........)))))	chr12:14944010-14944299(-)$1	1	175	194	13.9788
((((((........)))))	chr5:140032553-140032832(+)$1	1	187	206	14.8082
((((((........)))))	chrX:53611043-53611309(-)$1	1	16	35	13.9788
((((((........)))))	chr8:98731176-98731415(+)$1	1	51	70	13.9788
.(.(((........))).)	chr3:42685324-42685592(+)$1	1	86	105	14.6370
((((((........)))))	chr20:42089053-42089314(+)$1	1	1	20	14.6675
.(((((........)))))	chr22:20114375-20114646(+)$1	1	101	120	13.3475
((((((........)))))	chr3:184039643-184039904(+)$1	1	212	231	13.9788
((..((........)).))	chr5:149779345-149779660(+)$1	1	114	133	13.3718
(((..(........)..))	chr7:5792407-5792690(-)$1	1	164	183	14.0665
((((.(........).)))	chr5:180666042-180666280(-)$1	1	127	146	14.4913
((((((........)))).	chrX:49370495-49370776(+)$1	1	245	264	13.6388
)))(((........))).(	chr16:11931856-11932071(-)$1	1	116	135	13.4959
((((((........)))))	chr7:102953291-102953637(-)$1	1	297	316	14.6675
((((.(........).)))	chr5:33458639-33458870(+)$1	1	50	69	14.2882
((((((........)))))	chr7:35942692-35942926(+)$1	1	10	29	13.2156
((.(((........))).)	chr2:217364649-217364854(+)$1	1	63	82	14.7634
(((.((........)))))	chr11:57093767-57094040(-)$1	1	132	151	13.7904
(((.((........)))))	chr8:144661837-144662101(-)$1	1	123	142	13.1560
(.((((........)))).	chr15:89790808-89791061(+)$1	1	48	67	13.5541
((((((........)))))	chr10:70545792-70546076(+)$1	1	213	232	13.9788
)(((((........).)))	chr7:66240137-66240474(+)$1	1	101	120	13.6890
((((((........)))).	chr11:3023669-3023907(-)$1	1	162	181	13.3423
((((((........)))))	chr20:2638821-2639057(+)$1	1	117	136	13.9788
(...((........))...	chr11:110102533-110102827(-)$1	1	189	208	13.5091
((((((........))).)	chr1:28564266-28564519(+)$1	1	3	22	14.6085
((...(........)..))	chr14:21698377-21698625(-)$1	1	110	129	13.3367
)(((.(........).)))	chr16:89953999-89954224(+)$1	1	116	135	14.4653
((..((........)).))	chr5:179153585-179153848(+)$1	1	137	156	13.8546
((..((........))..)	chr12:53421858-53422072(+)$1	1	138	157	13.5127
((((((........)))))	chr22:38352681-38352951(+)$1	1	215	234	14.6675
((((((........))).)	chr15:66791644-66791857(-)$1	1	87	106	14.6421
.(((((........)))))	chr14:68126392-68126740(-)$1	1	289	308	14.3205
.(((((........)))))	chr3:185636052-185636309(-)$1	1	122	141	14.3322
((((((........)))))	chr1:28527601-28527983(-)$1	1	88	107	14.2943
.(((((........)))))	chr6:26158296-26158612(+)$1	1	279	298	14.2544
((((((........))).)	chr12:124017849-124018153(-)$1	1	276	295	14.6085
..((((........)))).	chr15:45007577-45007987(+)$1	1	72	91	13.2791
((((((........)))))	chr15:60646252-60646515(-)$1	1	57	76	14.6675
(.((((........)))).	chr12:76444210-76444454(-)$1	1	5	24	13.6308
.(((((........)))))	chr12:76442912-76443131(-)$1	1	191	210	14.3322
((((((........)))))	chr19:46856904-46857183(+)$1	1	24	43	13.9788
((((((........)))))	chr8:56985687-56985931(-)$1	1	114	133	14.8082
(((.((........)))))	chr14:21679461-21679746(-)$1	1	64	83	13.7904
.(((((........)))))	chrX:135959970-135960247(-)$1	1	56	75	13.3475
.(((((........)))))	chr3:25653911-25654301(-)$1	1	114	133	13.3475
.(((((........)))))	chr1:8934852-8935075(-)$1	1	132	151	13.3475
(..(((........)))..	chr10:15183356-15183657(-)$1	1	227	246	14.3193
((((((........)))))	chr19:10270958-10271166(-)$1	1	127	146	14.8082
((((((........)))))	chr2:172848120-172848378(+)$1	1	165	184	14.8082
..((((........)))).	chr17:38792082-38792440(-)$1	1	29	48	12.9227
((((((........)))..	chr19:4423703-4423936(+)$1	1	180	199	14.7308
((((((........)))..	chr12:56189739-56189962(-)$1	1	22	41	14.5525
((((((........)))))	chr2:198361786-198362109(-)$1	1	283	302	14.6675
((...(........)...)	chr15:69072325-69072570(-)$1	1	104	123	14.3787
.(((.(........).)))	chr22:20939040-20939257(+)$1	1	77	96	14.5403
.(((.(........).)))	chr22:20939057-20939275(+)$1	1	60	79	14.5403
)(((((........)))))	chr2:172582093-172582324(+)$1	1	96	115	14.3089
((((((........)))))	chr5:179153579-179153783(+)$1	1	30	49	14.6675
((.(((........))).)	chr3:122864864-122865186(+)$1	1	58	77	13.9124
(((.((........)).))	chr12:53428321-53428595(+)$1	1	162	181	13.7210
((((((........)))))	chr5:149779269-149779545(+)$1	1	26	45	14.6675
((.(((........))).)	chr9:134342923-134343183(+)$1	1	154	173	14.7634
(..(((........)))..	chr19:50000679-50000895(+)$1	1	135	154	14.7531
((((((........)))).	chr19:19603355-19603622(+)$1	1	151	170	13.1531
((((((........)))))	chr11:3023096-3023384(-)$1	1	73	92	14.2572
((((((........)))))	chr15:72499400-72499693(-)$1	1	154	173	13.9788
((((((........)))..	chr1:11849721-11849993(-)$1	1	218	237	14.4020
((((((........)))))	chr13:107220068-107220377(-)$1	1	212	231	14.6675
((((((........)))))	chr3:40503331-40503541(+)$1	1	50	69	14.6675

#PSSM
f : 0.20	g : 0.14	e : 0.14	c : 0.12	= : 0.07	! : 0.07	d : 0.07	: : 0.05	b : 0.04	D : 0.01	[ : 0.01	" : 0.01	# : 0.01	$ : 0.01	
e : 0.25	f : 0.17	c : 0.15	g : 0.14	d : 0.07	= : 0.05	[ : 0.02	! : 0.02	b : 0.02	a : 0.01	" : 0.01	# : 0.01	$ : 0.01	
e : 0.22	f : 0.17	g : 0.14	d : 0.12	c : 0.10	! : 0.07	= : 0.05	[ : 0.05	" : 0.04	
c : 0.22	e : 0.18	f : 0.12	g : 0.12	d : 0.11	= : 0.05	! : 0.05	[ : 0.05	" : 0.04	
c : 0.18	e : 0.17	g : 0.12	f : 0.11	b : 0.11	d : 0.11	[ : 0.07	= : 0.05	" : 0.02	! : 0.01	
c : 0.18	e : 0.17	g : 0.12	a : 0.12	f : 0.11	b : 0.11	d : 0.10	= : 0.05	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.18	e : 0.17	g : 0.12	a : 0.12	f : 0.11	b : 0.11	d : 0.10	= : 0.05	
c : 0.18	e : 0.17	g : 0.12	f : 0.11	b : 0.11	d : 0.10	] : 0.08	= : 0.05	2 : 0.02	3 : 0.01	
c : 0.25	e : 0.18	f : 0.12	g : 0.12	d : 0.12	= : 0.05	] : 0.04	2 : 0.04	3 : 0.02	
e : 0.21	d : 0.15	f : 0.12	g : 0.12	] : 0.10	c : 0.08	= : 0.05	3 : 0.05	2 : 0.04	: : 0.01	4 : 0.01	
e : 0.21	f : 0.17	c : 0.15	g : 0.12	= : 0.05	d : 0.05	] : 0.05	2 : 0.05	3 : 0.04	4 : 0.02	a : 0.01	b : 0.01	

#score	987.9912745831343
#seq	70
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF924CZR_PTBP1_UTR_m3_run1.txt

#BEAR
cccwwwwwwwwwwwwwwccc2	chr12:56736570-56736821(-)$1	251	68	89	21.7514
====vvvvvvvvvvvvv====	chr6:35393966-35394312(+)$1	346	286	307	20.7343
ddddtttttttttttdddddd	chrX:80065035-80065286(-)$1	251	115	136	19.1115
fffwwwwwwwwwwwwwwffff	chr1:150595952-150596186(-)$1	234	148	169	20.4202
eeeeettttttttttteeeee	chr9:116170055-116170301(-)$1	246	222	243	19.6807
iiiwwwwwwwwwwwwwwiiii	chr5:70954118-70954393(+)$1	275	42	63	21.2092
gggggtttttttttttggggg	chr20:62572817-62573063(-)$1	246	196	217	18.6979
gggwwwwwwwwwwwwwwgggg	chr12:6728366-6728624(-)$1	258	232	253	21.1505
###ccctttttttttttccc5	chr15:57580776-57581089(+)$1	313	24	45	18.3709
ddddvvvvvvvvvvvvvdddd	chr2:85281790-85282105(+)$1	315	89	110	21.4964
ccxxxxxxxxxxxxxxxccc2	chr3:113440336-113440590(-)$1	254	42	63	18.5030
!cccvvvvvvvvvvvvvccc2	chr14:69926344-69926618(+)$1	274	92	113	21.3827
ddd!!auuuuuuuuuuuua22	chr19:18669283-18669524(+)$1	241	18	39	20.1058
dxxxxxxxxxxxxxxxdddd3	chr8:101717130-101717370(-)$1	240	95	116	17.5871
ddddvvvvvvvvvvvvvdddd	chr10:102120847-102121106(+)$1	259	28	49	21.4964
fffwwwwwwwwwwwwwwffff	chr1:150595910-150596152(-)$1	242	114	135	20.4202
hhhhhuuuuuuuuuuuuhhhh	chr1:110564279-110564525(+)$1	246	167	188	19.3229
eeeeeuuuuuuuuuuuueeee	chr2:176791714-176791972(-)$1	258	125	146	21.6086
eeeexxxxxxxxxxxxxxxee	chr6:27223664-27223897(+)$1	233	208	229	17.9336
yyyyyyyyyyyyyyyydddd2	chr5:34956348-34956661(+)$1	313	100	121	19.6898
fffffuuuuuuuuuuuuffff	chr7:143002957-143003268(+)$1	311	287	308	20.0570
eeeevvvvvvvvvvvvveeee	chrX:122735242-122735511(-)$1	269	68	89	21.1218
[bbwwwwwwwwwwwwwwbbee	chr2:68479327-68479594(-)$1	267	190	211	20.6251
fffwwwwwwwwwwwwwwffff	chr5:41919111-41919383(+)$1	272	139	160	20.4202
eeeeettttttttttteeeee	chr9:116169950-116170255(-)$1	305	176	197	19.6807
e!!bbuuuuuuuuuuuubb22	chr6:24719011-24719270(-)$1	259	81	102	20.4786
#cccvvvvvvvvvvvvvccc]	chr19:45912065-45912318(-)$1	253	214	235	21.2718
!!ddddtttttttttttdddd	chr17:4174724-4175026(-)$1	302	16	37	19.3440
dddwwwwwwwwwwwwwwdddd	chr1:109816643-109816890(+)$1	247	55	76	21.9000
[dddduuuuuuuuuuuudddd	chr18:12986639-12986889(+)$1	250	201	222	21.9136
eexxxxxxxxxxxxxxxeeee	chr17:34957000-34957267(+)$1	267	205	226	18.2965
eeeeeuuuuuuuuuuuueeee	chr1:151669206-151669434(+)$1	228	81	102	21.6086
cc[ccctttttttttttccc]	chr15:96874018-96874293(+)$1	275	67	88	19.5247
dddduuuuuuuuuuuudddd:	chr17:57778100-57778397(-)$1	297	76	97	21.0111
eeeeettttttttttteeeee	chr6:27370951-27371257(+)$1	306	223	244	19.6807
[bbwwwwwwwwwwwwwwbbdd	chr14:21490684-21490940(-)$1	256	134	155	20.7078
cccyyyyyyyyyyyyyyyycc	chr3:9860855-9861156(+)$1	301	77	98	20.9842
cccwwwwwwwwwwwwwwccc:	chr19:13942554-13942807(+)$1	253	97	118	20.8319
ffxxxxxxxxxxxxxxxffff	chr2:240899088-240899348(-)$1	260	38	59	17.3671
++bbvvvvvvvvvvvvvbb>>	chr19:56173202-56173446(+)$1	244	168	189	18.3565
ddddxxxxxxxxxxxxxxxdd	chr6:36200083-36200372(+)$1	289	94	115	18.1686
iiiixxxxxxxxxxxxxxxii	chrX:131337402-131337655(-)$1	253	182	203	17.6305
ddddvvvvvvvvvvvvvdddd	chr19:45911721-45911966(-)$1	245	208	229	21.4964
cyyyyyyyyyyyyyyyyccc]	chr15:41571902-41572172(+)$1	270	217	238	21.0998
eeeeettttttttttteeeee	chr9:116169902-116170144(-)$1	242	65	86	19.6807
cccyyyyyyyyyyyyyyyycc	chr1:46744292-46744517(-)$1	225	63	84	20.9842
gddddtttttttttttdddd]	chr7:158433274-158433557(-)$1	283	190	211	20.0716
eeeeyyyyyyyyyyyyyyyye	chr2:182781164-182781462(+)$1	298	34	55	20.3043
hhhhvvvvvvvvvvvvvhhhh	chr6:29570619-29570904(-)$1	285	177	198	19.3204
yyyyyyyyyyyyyyyydddd2	chr6:30692314-30692544(+)$1	230	113	134	19.6898
ddddxxxxxxxxxxxxxxxdd	chr6:43151926-43152177(+)$1	251	61	82	18.1686
ddddvvvvvvvvvvvvvdddd	chr6:36199233-36199517(+)$1	284	189	210	21.4964
dddwwwwwwwwwwwwwwdddd	chr3:75779279-75779552(-)$1	273	146	167	21.9000
bbddddtttttttttttdddd	chr8:101931099-101931341(-)$1	242	185	206	18.7540
==xxxxxxxxxxxxxxx====	chr8:74463815-74464091(-)$1	276	217	238	18.1032
ccxxxxxxxxxxxxxxxccc3	chr17:30809013-30809256(+)$1	243	202	223	18.5894
yyyyyyyyyyyyyyyydddd2	chr6:30692262-30692514(+)$1	252	165	186	19.6898
!ddddtttttttttttdddd2	chrX:62569249-62569557(-)$1	308	235	256	20.0899
dddduuuuuuuuuuuudddd:	chr14:63838648-63838912(-)$1	264	149	170	21.0111
ddddyyyyyyyyyyyyyyyyd	chr12:113826683-113826984(+)$1	301	255	276	20.4377
dddduuuuuuuuuuuudddd:	chr12:49330397-49330683(-)$1	286	58	79	21.0111
ccc[atttttttttttaccc9	chr10:50374497-50374796(-)$1	299	140	161	19.8539
dddduuuuuuuuuuuudddd2	chr1:27480978-27481266(-)$1	288	126	147	21.9306
eeeeeuuuuuuuuuuuueeee	chr1:1258219-1258503(-)$1	284	129	150	21.6086
ddddvvvvvvvvvvvvvdddd	chr6:29570707-29570986(-)$1	279	209	230	21.4964
ggggxxxxxxxxxxxxxxxgg	chr1:145822742-145823037(-)$1	295	224	245	17.5865
hhhhvvvvvvvvvvvvvhhhh	chr9:123579340-123579598(-)$1	258	138	159	19.3204

#otherMatches

#Seq PSSM
GGACUCCAUUUCUUUCUUCCA	chr12:56736570-56736821(-)$1	251	68	89	21.7514
UUUGCACACCUUUUCCCCAGG	chr6:35393966-35394312(+)$1	346	286	307	20.7343
GCCUCCUCAGCUCUUGGGCUA	chrX:80065035-80065286(-)$1	251	115	136	19.1115
CUGCCUUCUCUAUCAUUCAGC	chr1:150595952-150596186(-)$1	234	148	169	20.4202
UAAGCUUUGAUAACCUGCUUA	chr9:116170055-116170301(-)$1	246	222	243	19.6807
agcacuugcuucucucaguuu	chr5:70954118-70954393(+)$1	275	42	63	21.2092
UCUGCUUCCUCUUAGCGCAGG	chr20:62572817-62573063(-)$1	246	196	217	18.6979
agcuuugcuuauauuuuguuc	chr12:6728366-6728624(-)$1	258	232	253	21.1505
CACUGCUUUUCCUAACUGCAU	chr15:57580776-57581089(+)$1	313	24	45	18.3709
AGACUUAACCUAAUCAUGUCU	chr2:85281790-85282105(+)$1	315	89	110	21.4964
UGAUUCCUCCCCCACCCCAAC	chr3:113440336-113440590(-)$1	254	42	63	18.5030
CAUGUCUCUUGUCUCUUCGUC	chr14:69926344-69926618(+)$1	274	92	113	21.3827
ggaugcucucaaaauguugau	chr19:18669283-18669524(+)$1	241	18	39	20.1058
UGUUUCCUCUUAUUCAAGCCA	chr8:101717130-101717370(-)$1	240	95	116	17.5871
GAUAUUAUUUCUUCUCUUAUC	chr10:102120847-102121106(+)$1	259	28	49	21.4964
CUGCCUUCUCUAUCAUUCAGC	chr1:150595910-150596152(-)$1	242	114	135	20.4202
GUUCUGCAGACCACACAGGAA	chr1:110564279-110564525(+)$1	246	167	188	19.3229
cuugcucucaacguccuguaa	chr2:176791714-176791972(-)$1	258	125	146	21.6086
cucaaucucucugucucccug	chr6:27223664-27223897(+)$1	233	208	229	17.9336
UUUUUUUCUUUACCUUCAUAC	chr5:34956348-34956661(+)$1	313	100	121	19.6898
GUGGCUUUUAUUUCAGUGCCA	chr7:143002957-143003268(+)$1	311	287	308	20.0570
GAACUCAUUAACUUCUUGUUC	chrX:122735242-122735511(-)$1	269	68	89	21.1218
cgccuccccucccccacgcgc	chr2:68479327-68479594(-)$1	267	190	211	20.6251
cuaucaaauaucuucauuaga	chr5:41919111-41919383(+)$1	272	139	160	20.4202
UAAGCUUUGAUAACCUGCUUA	chr9:116169950-116170255(-)$1	305	176	197	19.6807
GUUAGUUAUUUUCUCCUCUUU	chr6:24719011-24719270(-)$1	259	81	102	20.4786
UGCCUCUUUCUCUUUUUGGUC	chr19:45912065-45912318(-)$1	253	214	235	21.2718
AUCUGACUUUUCCCUCUUCAG	chr17:4174724-4175026(-)$1	302	16	37	19.3440
GCUCCCUUCCCUUCCCCAGCC	chr1:109816643-109816890(+)$1	247	55	76	21.9000
uccugucuucauuguuuCAGG	chr18:12986639-12986889(+)$1	250	201	222	21.9136
AUCAUUAAAAAAGAAAAAUCG	chr17:34957000-34957267(+)$1	267	205	226	18.2965
acuaauuuuuuguauuuuugg	chr1:151669206-151669434(+)$1	228	81	102	21.6086
CCCGAGUUGCCUCCUUUCUCC	chr15:96874018-96874293(+)$1	275	67	88	19.5247
GCAAUCCUGCCAUAUUUUGCC	chr17:57778100-57778397(-)$1	297	76	97	21.0111
GGCCAUGCUCAUAUCCUGGCU	chr6:27370951-27371257(+)$1	306	223	244	19.6807
UGUUUUCCUCAAUUCUUGCUG	chr14:21490684-21490940(-)$1	256	134	155	20.7078
cugccuaccuauccuuccaca	chr3:9860855-9861156(+)$1	301	77	98	20.9842
GGCUUUUUCACCCUUUCGCCU	chr19:13942554-13942807(+)$1	253	97	118	20.8319
CACACUCCUUCCCUCCUUGCG	chr2:240899088-240899348(-)$1	260	38	59	17.3671
ucgcucgucucuguccugcuc	chr19:56173202-56173446(+)$1	244	168	189	18.3565
GGACUUCCUCUCUUUCUAUGU	chr6:36200083-36200372(+)$1	289	94	115	18.1686
UCGCAGGAAUCAGGGGAAAGU	chrX:131337402-131337655(-)$1	253	182	203	17.6305
CCUUUUUCUUCUUCCCUGAGG	chr19:45911721-45911966(-)$1	245	208	229	21.4964
CCUAUAUAUGUAUUUCUGACU	chr15:41571902-41572172(+)$1	270	217	238	21.0998
UAAGCUUUGAUAACCUGCUUA	chr9:116169902-116170144(-)$1	242	65	86	19.6807
CAGUUCUAUCUUUCUCUUUCU	chr1:46744292-46744517(-)$1	225	63	84	20.9842
acuaauucucuuaauuuuggu	chr7:158433274-158433557(-)$1	283	190	211	20.0716
UCUGAGCAcuuuuuaauucac	chr2:182781164-182781462(+)$1	298	34	55	20.3043
UGCAUCCUCCCCUCUCCUGCG	chr6:29570619-29570904(-)$1	285	177	198	19.3204
UGCCCAUUCCAUUUGUCCAGU	chr6:30692314-30692544(+)$1	230	113	134	19.6898
GUAUUUUUUUUCUUUUCUCAU	chr6:43151926-43152177(+)$1	251	61	82	18.1686
GCCACCAAACAUCUUCCUGGC	chr6:36199233-36199517(+)$1	284	189	210	21.4964
UCCCAUUCUCUUUCUCAGGAA	chr3:75779279-75779552(-)$1	273	146	167	21.9000
GAUGGGGCUAAGUUAUACCCA	chr8:101931099-101931341(-)$1	242	185	206	18.7540
CUCCCUUUUUUUACAUAAGGA	chr8:74463815-74464091(-)$1	276	217	238	18.1032
GGCUUUUAUUUUCCUCUCCAA	chr17:30809013-30809256(+)$1	243	202	223	18.5894
UGCCCAUUCCAUUUGUCCAGU	chr6:30692262-30692514(+)$1	252	165	186	19.6898
UUCAACCAUUUCGUUAUUGAU	chrX:62569249-62569557(-)$1	308	235	256	20.0899
uuucuuuacuuuuuuUGAAAU	chr14:63838648-63838912(-)$1	264	149	170	21.0111
GUCCCCUCGUCUCCCUUUCUG	chr12:113826683-113826984(+)$1	301	255	276	20.4377
CAACUCAUUCACUGCUGUUGC	chr12:49330397-49330683(-)$1	286	58	79	21.0111
gugucucuuucccucuGUACU	chr10:50374497-50374796(-)$1	299	140	161	19.8539
CCCUUCCUCUAUCCCUAGGGC	chr1:27480978-27481266(-)$1	288	126	147	21.9306
UGUUCUGCCCACUCUCUGGAC	chr1:1258219-1258503(-)$1	284	129	150	21.6086
AGGCUCACAUGCUCCUUGCCU	chr6:29570707-29570986(-)$1	279	209	230	21.4964
guaugaucuccuacuaugaau	chr1:145822742-145823037(-)$1	295	224	245	17.5865
AAAGUCUUGGAUAUAUUCUUU	chr9:123579340-123579598(-)$1	258	138	159	19.3204

#DB
(((..............))).	chr12:56736570-56736821(-)$1	1	68	89	21.7514
((((.............))))	chr6:35393966-35394312(+)$1	1	286	307	20.7343
((((...........))))((	chrX:80065035-80065286(-)$1	1	115	136	19.1115
(((..............))))	chr1:150595952-150596186(-)$1	1	148	169	20.4202
(((((...........)))))	chr9:116170055-116170301(-)$1	1	222	243	19.6807
(((..............))))	chr5:70954118-70954393(+)$1	1	42	63	21.2092
(((((...........)))))	chr20:62572817-62573063(-)$1	1	196	217	18.6979
(((..............))))	chr12:6728366-6728624(-)$1	1	232	253	21.1505
...(((...........))).	chr15:57580776-57581089(+)$1	1	24	45	18.3709
((((.............))))	chr2:85281790-85282105(+)$1	1	89	110	21.4964
((...............))).	chr3:113440336-113440590(-)$1	1	42	63	18.5030
.(((.............))).	chr14:69926344-69926618(+)$1	1	92	113	21.3827
(((..(............)..	chr19:18669283-18669524(+)$1	1	18	39	20.1058
(...............)))).	chr8:101717130-101717370(-)$1	1	95	116	17.5871
((((.............))))	chr10:102120847-102121106(+)$1	1	28	49	21.4964
(((..............))))	chr1:150595910-150596152(-)$1	1	114	135	20.4202
(((((............))))	chr1:110564279-110564525(+)$1	1	167	188	19.3229
(((((............))))	chr2:176791714-176791972(-)$1	1	125	146	21.6086
((((...............))	chr6:27223664-27223897(+)$1	1	208	229	17.9336
................)))).	chr5:34956348-34956661(+)$1	1	100	121	19.6898
(((((............))))	chr7:143002957-143003268(+)$1	1	287	308	20.0570
((((.............))))	chrX:122735242-122735511(-)$1	1	68	89	21.1218
.((..............))))	chr2:68479327-68479594(-)$1	1	190	211	20.6251
(((..............))))	chr5:41919111-41919383(+)$1	1	139	160	20.4202
(((((...........)))))	chr9:116169950-116170255(-)$1	1	176	197	19.6807
(..((............))..	chr6:24719011-24719270(-)$1	1	81	102	20.4786
.(((.............))).	chr19:45912065-45912318(-)$1	1	214	235	21.2718
..((((...........))))	chr17:4174724-4175026(-)$1	1	16	37	19.3440
(((..............))))	chr1:109816643-109816890(+)$1	1	55	76	21.9000
.((((............))))	chr18:12986639-12986889(+)$1	1	201	222	21.9136
((...............))))	chr17:34957000-34957267(+)$1	1	205	226	18.2965
(((((............))))	chr1:151669206-151669434(+)$1	1	81	102	21.6086
((.(((...........))).	chr15:96874018-96874293(+)$1	1	67	88	19.5247
((((............)))).	chr17:57778100-57778397(-)$1	1	76	97	21.0111
(((((...........)))))	chr6:27370951-27371257(+)$1	1	223	244	19.6807
.((..............))))	chr14:21490684-21490940(-)$1	1	134	155	20.7078
(((................))	chr3:9860855-9861156(+)$1	1	77	98	20.9842
(((..............))).	chr19:13942554-13942807(+)$1	1	97	118	20.8319
((...............))))	chr2:240899088-240899348(-)$1	1	38	59	17.3671
..((.............))..	chr19:56173202-56173446(+)$1	1	168	189	18.3565
((((...............))	chr6:36200083-36200372(+)$1	1	94	115	18.1686
((((...............))	chrX:131337402-131337655(-)$1	1	182	203	17.6305
((((.............))))	chr19:45911721-45911966(-)$1	1	208	229	21.4964
(................))).	chr15:41571902-41572172(+)$1	1	217	238	21.0998
(((((...........)))))	chr9:116169902-116170144(-)$1	1	65	86	19.6807
(((................))	chr1:46744292-46744517(-)$1	1	63	84	20.9842
(((((...........)))).	chr7:158433274-158433557(-)$1	1	190	211	20.0716
((((................)	chr2:182781164-182781462(+)$1	1	34	55	20.3043
((((.............))))	chr6:29570619-29570904(-)$1	1	177	198	19.3204
................)))).	chr6:30692314-30692544(+)$1	1	113	134	19.6898
((((...............))	chr6:43151926-43152177(+)$1	1	61	82	18.1686
((((.............))))	chr6:36199233-36199517(+)$1	1	189	210	21.4964
(((..............))))	chr3:75779279-75779552(-)$1	1	146	167	21.9000
))((((...........))))	chr8:101931099-101931341(-)$1	1	185	206	18.7540
((...............))))	chr8:74463815-74464091(-)$1	1	217	238	18.1032
((...............))).	chr17:30809013-30809256(+)$1	1	202	223	18.5894
................)))).	chr6:30692262-30692514(+)$1	1	165	186	19.6898
.((((...........)))).	chrX:62569249-62569557(-)$1	1	235	256	20.0899
((((............)))).	chr14:63838648-63838912(-)$1	1	149	170	21.0111
((((................)	chr12:113826683-113826984(+)$1	1	255	276	20.4377
((((............)))).	chr12:49330397-49330683(-)$1	1	58	79	21.0111
(((.(...........)))).	chr10:50374497-50374796(-)$1	1	140	161	19.8539
((((............)))).	chr1:27480978-27481266(-)$1	1	126	147	21.9306
(((((............))))	chr1:1258219-1258503(-)$1	1	129	150	21.6086
((((.............))))	chr6:29570707-29570986(-)$1	1	209	230	21.4964
((((...............))	chr1:145822742-145823037(-)$1	1	224	245	17.5865
((((.............))))	chr9:123579340-123579598(-)$1	1	138	159	19.3204

#PSSM
d : 0.25	e : 0.17	c : 0.13	f : 0.07	g : 0.05	! : 0.04	h : 0.04	y : 0.04	[ : 0.04	= : 0.02	i : 0.02	# : 0.02	+ : 0.01	b : 0.01	
d : 0.28	e : 0.16	c : 0.14	f : 0.07	y : 0.05	g : 0.04	h : 0.04	b : 0.04	= : 0.02	i : 0.02	! : 0.02	# : 0.01	x : 0.01	+ : 0.01	
d : 0.31	e : 0.14	c : 0.10	x : 0.08	f : 0.05	y : 0.05	g : 0.04	h : 0.04	b : 0.04	i : 0.02	= : 0.01	# : 0.01	! : 0.01	[ : 0.01	
d : 0.26	w : 0.16	e : 0.14	x : 0.08	y : 0.08	c : 0.05	h : 0.04	g : 0.02	b : 0.02	= : 0.01	! : 0.01	f : 0.01	i : 0.01	[ : 0.01	
v : 0.17	w : 0.16	x : 0.16	y : 0.11	e : 0.10	d : 0.07	u : 0.05	c : 0.02	t : 0.01	g : 0.01	! : 0.01	h : 0.01	f : 0.01	b : 0.01	a : 0.01	
v : 0.17	w : 0.16	x : 0.16	u : 0.16	t : 0.13	y : 0.11	c : 0.02	d : 0.02	a : 0.01	
t : 0.19	v : 0.17	u : 0.17	w : 0.16	x : 0.16	y : 0.11	
t : 0.19	v : 0.17	u : 0.17	w : 0.16	x : 0.16	y : 0.11	
t : 0.19	v : 0.17	u : 0.17	w : 0.16	x : 0.16	y : 0.11	
t : 0.19	v : 0.17	u : 0.17	w : 0.16	x : 0.16	y : 0.11	
t : 0.19	v : 0.17	u : 0.17	w : 0.16	x : 0.16	y : 0.11	
t : 0.19	v : 0.17	u : 0.17	w : 0.16	x : 0.16	y : 0.11	
t : 0.19	v : 0.17	u : 0.17	w : 0.16	x : 0.16	y : 0.11	
t : 0.19	v : 0.17	u : 0.17	w : 0.16	x : 0.16	y : 0.11	
t : 0.19	v : 0.17	u : 0.17	w : 0.16	x : 0.16	y : 0.11	
v : 0.17	t : 0.17	u : 0.17	w : 0.16	x : 0.16	y : 0.11	d : 0.01	
v : 0.17	w : 0.16	d : 0.16	x : 0.14	u : 0.11	y : 0.07	e : 0.05	t : 0.05	g : 0.01	a : 0.01	
d : 0.31	c : 0.14	e : 0.13	f : 0.07	x : 0.07	b : 0.05	y : 0.05	h : 0.04	= : 0.02	g : 0.02	i : 0.01	u : 0.01	
d : 0.31	c : 0.14	e : 0.13	f : 0.07	x : 0.07	b : 0.05	y : 0.05	h : 0.04	= : 0.02	g : 0.02	i : 0.01	a : 0.01	
d : 0.35	c : 0.17	e : 0.16	f : 0.07	g : 0.04	h : 0.04	= : 0.02	i : 0.02	2 : 0.02	y : 0.02	> : 0.01	
d : 0.22	e : 0.17	2 : 0.14	f : 0.07	] : 0.05	: : 0.05	g : 0.04	h : 0.04	= : 0.02	i : 0.02	3 : 0.02	c : 0.02	5 : 0.01	> : 0.01	9 : 0.01	

#score	1345.3524104656426
#seq	67
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF949RPR_PRPF8_CDS_m3_run1.txt

#BEAR
ffff!!a"""cccmmmmccc333a22ffff	chr20:57245546-57245841(+)$1	295	27	57	14.1471
iiiiiiii[ddddllldddd]iiiiiiiii	chr9:128094766-128095088(+)$1	322	66	96	10.8584
edddd[ccc[cccmmmmccc]ccc]dddd:	chr5:10410283-10410544(+)$1	261	225	255	11.0414
==========cccmmmmccc]=========	chr5:175815266-175815526(-)$1	260	101	131	14.8174
ggggg[gggggggmmmmggggggg]ggggg	chr11:118899781-118900046(-)$1	265	169	199	12.4508
!!eeeee[eeeeemmmmeeeee]eeeee22	chr10:70962151-70962428(+)$1	277	228	258	10.6236
!ffffff"""cccmmmmccc22ffffff]a	chr10:75549908-75550194(+)$1	286	138	168	13.1888
ccceeeee[ddddmmmmdddd333eeeee]	chr2:136362471-136362731(+)$1	260	11	41	11.9799
""ffffff!!cccmmmmccc22ffffff44	chr10:62551914-62552190(+)$1	276	128	158	12.7626
ddd[ccc"""ddddllldddd333ccc]dd	chr6:44108692-44108977(+)$1	285	85	115	10.2371
#ggggggg####ammmma4444ggggggg2	chr7:102939844-102940111(+)$1	267	36	66	12.5560
iiiiiiiii[a[ammmma]aiiiiiiiiif	chr7:150774240-150774504(-)$1	264	27	57	12.6666
b####ccc[ddddmmmmddddccc22bb]f	chr7:43635594-43635905(+)$1	311	107	137	10.6351
eeee[eeeeecccmmmmccc]eeeee22ee	chr4:148604805-148605068(-)$1	263	79	109	11.8098
::eeeee"""cccmmmmccc22eeeeeeee	chr19:53589268-53589640(-)$1	372	17	47	11.2514
[ffffffccccccmmmmccc]ccc]fffff	chr6:135375602-135375899(-)$1	297	69	99	12.3165
:ccceeeee[cccmmmmccc]eeeee]ccc	chr4:2513581-2513833(+)$1	252	86	116	11.7758
=========[bboooooobb]=========	chr5:149824981-149825252(-)$1	271	99	129	10.4401
$$$$ccc"""cccmmmmccc333ccc333e	chr11:64898802-64899047(-)$1	245	146	176	14.2316
iiiiiiii!!ccclllccc333iiiiiiii	chr1:114947880-114948150(-)$1	270	138	168	12.6578
g####ccc[ddddmmmmdddd]ccc4444g	chr6:99852262-99852514(-)$1	252	29	59	11.9616
gggggggccccccmmmmccc22ccc]gggg	chr5:98228081-98228335(-)$1	254	35	65	13.4333
ceeeee####cccmmmmccceeeee22ccc	chr11:65631164-65631412(+)$1	248	159	189	12.6170
!dddd[bb!!cccmmmmccc]bb]ddddcc	chr5:131821193-131821475(-)$1	282	183	213	11.6366
f[dddd####cccmmmmccc333dddd]ff	chr4:24557734-24557980(-)$1	246	34	64	13.4564
ddccc####cccnnnnnccc4444ccc]dd	chr19:19612123-19612370(+)$1	247	73	103	9.9460
!!eeeee[eeeeemmmmeeeee]eeeee22	chr12:76793480-76793761(-)$1	281	62	92	10.6236
ccc[a!!ffffffmmmmffffffa]cccdd	chr9:4740792-4741045(-)$1	253	108	138	10.5570
fff[ccc[eeeeemmmmeeeeeccc]ffff	chr10:118661118-118661382(-)$1	264	194	224	10.8652
ccbb$$$$$ddddmmmmdddd4444bb]cc	chr14:24034637-24034941(-)$1	304	65	95	10.5262
eeeee[a"""cccmmmmccc22a]eeeee]	chr2:27448653-27448880(+)$1	227	192	222	13.6509
fggggggg"""ccclllccc333ggggggg	chr1:100961432-100961753(+)$1	321	161	191	12.2676
gggggggggggggmmmmgggggggcccrrr	chr9:131397728-131398044(-)$1	316	190	220	10.7841
eeee!!gggggggmmmmggggggg]eeeee	chr11:122931682-122931929(-)$1	247	164	194	11.5468
b[ccc!!a[ddddmmmmddddaccc]bbff	chr16:19721669-19721945(-)$1	276	145	175	11.4010
$$$$eeeee[cccmmmmccc]eeeee333e	chr21:38610520-38610886(-)$1	366	314	344	12.3389
ffff[ccc[ddddmmmmddddcccffffff	chr11:47330141-47330398(+)$1	257	202	232	11.1361
ccceeeee!!cccmmmmccc333eeeee]c	chr12:7079224-7079474(-)$1	250	159	189	13.9399
gggggga[ddddmmmmdddd]a]ggggggg	chr21:40720002-40720335(-)$1	333	16	46	10.6729
b[ffffff[ddddmmmmdddd]ffffff]b	chr14:24911314-24911628(-)$1	314	172	202	10.6145
e[a$$$$$eeeeemmmmeeeee4444a]ee	chr1:31465385-31465617(-)$1	232	110	140	10.4764
gggg[dddd[cccmmmmcccdddd]ggggg	chr12:108930137-108930447(-)$1	310	252	282	12.1961
ccc####ffffffmmmmffffff4444ccc	chr8:95878444-95878680(+)$1	236	182	212	10.6835
####eeeee[cccmmmmccc]eeeee333g	chr11:134129489-134129832(+)$1	343	229	259	13.2037
fff[ccc"""cccmmmmccc333ccc]fff	chr9:133753849-133754120(+)$1	271	82	112	14.5334
ccc[iiiiiiiiimmmmiiiiiiiii22cc	chr17:80575014-80575286(-)$1	272	110	140	12.3567
iiiiiiiiicccnnnnnccc]iiiiiiiii	chr2:69736202-69736472(-)$1	270	211	241	10.5843
hh[ccc!!eeeeemmmmeeeee22ccc22h	chr2:223494682-223494972(-)$1	290	35	65	10.3447
g[ccc!!ffffffmmmmffffff]ccc]gg	chr18:66358383-66358648(-)$1	265	6	36	11.1230
hhhhh"""a!!bbmmmmbb22a333hhhhh	chr9:134405701-134405981(-)$1	280	182	212	10.5334
ggg[bb####ccclllccc333bbgggggg	chr2:182757259-182757564(+)$1	305	180	210	11.3657
[ccciiiiiiiiimmmmiiiiiiiii]ccc	chr4:159791492-159791760(+)$1	268	166	196	12.5022
eee####bb[cccmmmmccc]bb22eeeee	chr16:67765177-67765452(-)$1	275	136	166	11.7436
=============mmmm=============	chr8:57878595-57878863(-)$1	268	149	179	13.6261
ccc[a[dddd[bbmmmmbb]ddddaccc33	chr12:49500424-49500741(-)$1	317	21	51	9.7528

#otherMatches

#Seq PSSM
AGAAUCGAGAGGAAAGAUCCCAGCAUUUUU	chr20:57245546-57245841(+)$1	295	27	57	14.1471
CUGAGAUCUGAGUGCAGCUCUGAUUUUGGG	chr9:128094766-128095088(+)$1	322	66	96	10.8584
UAGUAAUAUUUGCAAUUGCAUAUAAUACUU	chr5:10410283-10410544(+)$1	261	225	255	11.0414
GCUGGGGUUCCGGGUGGCCGUGGGCCUCGG	chr5:175815266-175815526(-)$1	260	101	131	14.8174
CACUGGGUGUUUGUGUACAGGCAUGUGGUG	chr11:118899781-118900046(-)$1	265	169	199	12.4508
GCUAUUUAUAAAAUUUAUUUUACAAGUGAA	chr10:70962151-70962428(+)$1	277	228	258	10.6236
UCAGGUAAAUCGGAUCUCUGCAUACCUGUG	chr10:75549908-75550194(+)$1	286	138	168	13.1888
UGAAAGAUACAACCAGAGUUGAAAAUCUUA	chr2:136362471-136362731(+)$1	260	11	41	11.9799
UCUCGGUAAGGAGUGCCCUUGAUACUGACU	chr10:62551914-62552190(+)$1	276	128	158	12.7626
UCUUCAUCAAUGGAAUCUCCAAAUAUGCAG	chr6:44108692-44108977(+)$1	285	85	115	10.2371
UGCAUUAAGGUUGGACUCUGGAUUGAUGCU	chr7:102939844-102940111(+)$1	267	36	66	12.5560
UAGUAGCUGAGGGGUUGCGCCAGCUGCUGG	chr7:150774240-150774504(-)$1	264	27	57	12.6666
GUUCUGGAAUAGUAAGUAUUGUCUUUCUUA	chr7:43635594-43635905(+)$1	311	107	137	10.6351
CGUGCUCAGCCUGGCGCCGGAGCUGAAACA	chr4:148604805-148605068(-)$1	263	79	109	11.8098
UUUUGGAUAUUCAGUAUUGACUUCUAAAGA	chr19:53589268-53589640(-)$1	372	17	47	11.2514
CAUGGCCCGGCAUCGGAAUGUUCGAGGCUA	chr6:135375602-135375899(-)$1	297	69	99	12.3165
CCUUCUGUUUACAAGAUUGUUGACGGUGAG	chr4:2513581-2513833(+)$1	252	86	116	11.7758
CUAAUGCUUGGGUUUAUUUUGAAGCAUUGG	chr5:149824981-149825252(-)$1	271	99	129	10.4401
CCUCCACUCUGCCUCCUGGCCCUGUGACCU	chr11:64898802-64899047(-)$1	245	146	176	14.2316
UUUUUGGUGUUGAUUUUCAUAAGCUAAAAA	chr1:114947880-114948150(-)$1	270	138	168	12.6578
ACGAAAGGUAUAUUUUGGUGUUUCUGGUUU	chr6:99852262-99852514(-)$1	252	29	59	11.9616
AAAAUCUCUUCCUGCCAAGGUUGAGCAGAU	chr5:98228081-98228335(-)$1	254	35	65	13.4333
GGAUGACCUUUGCAGCAGCAUCAUCGACGG	chr11:65631164-65631412(+)$1	248	159	189	12.6170
AAGCUUCCAAAUCAGAGGAUGGGUAGCUGC	chr5:131821193-131821475(-)$1	282	183	213	11.6366
UGAGAGGACACUGGCUACAGAUAUUCUAAU	chr4:24557734-24557980(-)$1	246	34	64	13.4564
CCGCUGCCCCACACCCCGUGCUGAAGCAGG	chr19:19612123-19612370(+)$1	247	73	103	9.9460
GUACAAUCACAGAUCCUUCUGUUAUUGUUA	chr12:76793480-76793761(-)$1	281	62	92	10.6236
GGUGGGAGCUCUGGGCCCAGGGCCGGCCGU	chr9:4740792-4741045(-)$1	253	108	138	10.5570
AGAUUUUGAUUGGCUCGCCGGUAAAUUCUC	chr10:118661118-118661382(-)$1	264	194	224	10.8652
UGGUGACAAUGGGAUACUCCACAGAACACA	chr14:24034637-24034941(-)$1	304	65	95	10.5262
GAAGAGCAGAGGCCCAGGCCAAGGUCUUUG	chr2:27448653-27448880(+)$1	227	192	222	13.6509
CCAGCCUUUCAGGUACUGCCAAUGAGGUUG	chr1:100961432-100961753(+)$1	321	161	191	12.2676
GGCGUUGGCAGUUGGACAGCUGCCUCCUGC	chr9:131397728-131398044(-)$1	316	190	220	10.7841
GAAACGUGAGGAGGGAACUUUUUGAUUUUA	chr11:122931682-122931929(-)$1	247	164	194	11.5468
GUGGCACGCUCGGCCUCCCGACGCUUCCCC	chr16:19721669-19721945(-)$1	276	145	175	11.4010
UCUGAUGGGAGCCUCAAGGCACUCGUGCUG	chr21:38610520-38610886(-)$1	366	314	344	12.3389
GCUGAUCUUAAUGCUAACAUUAGAUAGCAG	chr11:47330141-47330398(+)$1	257	202	232	11.1361
ACGCCGACCCAGCAGUGGCUAUAGUCGGAC	chr12:7079224-7079474(-)$1	250	159	189	13.9399
GUUUUCCGCGGGUCGUCCCGGGUGAGGACG	chr21:40720002-40720335(-)$1	333	16	46	10.6729
CUGCAUCGGGGCUGCCGAGCUGCGAUGCCG	chr14:24911314-24911628(-)$1	314	172	202	10.6145
CCGUACCCCUGGUAAUUGCCAGAACUCUGC	chr1:31465385-31465617(-)$1	232	110	140	10.4764
UGGCCUAAGCUCUAUAAGGAUUUAUGUUAU	chr12:108930137-108930447(-)$1	310	252	282	12.1961
ccuccugccucagcuuucugaggaacuggg	chr8:95878444-95878680(+)$1	236	182	212	10.6835
AAACAGGUUUGCAUACUUGCUAACCUACCU	chr11:134129489-134129832(+)$1	343	229	259	13.2037
GGUCUAUGAACUCAUGCGAGCAUGUAAGCC	chr9:133753849-133754120(+)$1	271	82	112	14.5334
UCCAGGUAGGUGUUAGGAUGCCUGCUGGGG	chr17:80575014-80575286(-)$1	272	110	140	12.3567
GCAAAUACAGUGGUGUGUACUUGUGUUUGU	chr2:69736202-69736472(-)$1	270	211	241	10.5843
AAUAUAUUUAUAGAUUACUAUAUUUGUUUU	chr2:223494682-223494972(-)$1	290	35	65	10.3447
AUUUUUUAGUGAUAAAAGUUAUUUAAACUU	chr18:66358383-66358648(-)$1	265	6	36	11.1230
CCAAGGUUGGAUGGAUGCAGACCCGCUUGG	chr9:134405701-134405981(-)$1	280	182	212	10.5334
CGCCGGAGCAGAGCCACUCGGGCCGCGUCC	chr2:182757259-182757564(+)$1	305	180	210	11.3657
Gugugucagucaaggucuuggcugacaaca	chr4:159791492-159791760(+)$1	268	166	196	12.5022
GGCUCAUGUCAACCCUGGUUAACCUGUCAG	chr16:67765177-67765452(-)$1	275	136	166	11.7436
UUCCUGGCAUGGUCAAGGCUAUGUUAGGAG	chr8:57878595-57878863(-)$1	268	149	179	13.6261
GCUAGAGUCCCUGUUGCCAUGGACCAGCCU	chr12:49500424-49500741(-)$1	317	21	51	9.7528

#DB
((((..(...(((....)))...)..))))	chr20:57245546-57245841(+)$1	1	27	57	14.1471
((((((((.((((...)))).)))))))))	chr9:128094766-128095088(+)$1	1	66	96	10.8584
)((((.(((.(((....))).))).)))).	chr5:10410283-10410544(+)$1	1	225	255	11.0414
(((((((((((((....))).)))))))))	chr5:175815266-175815526(-)$1	1	101	131	14.8174
(((((.(((((((....))))))).)))))	chr11:118899781-118900046(-)$1	1	169	199	12.4508
..(((((.(((((....))))).)))))..	chr10:70962151-70962428(+)$1	1	228	258	10.6236
.((((((...(((....)))..)))))).)	chr10:75549908-75550194(+)$1	1	138	168	13.1888
((((((((.((((....))))...))))).	chr2:136362471-136362731(+)$1	1	11	41	11.9799
..((((((..(((....)))..))))))..	chr10:62551914-62552190(+)$1	1	128	158	12.7626
(((.(((...((((...))))...))).))	chr6:44108692-44108977(+)$1	1	85	115	10.2371
.(((((((....(....)....))))))).	chr7:102939844-102940111(+)$1	1	36	66	12.5560
(((((((((.(.(....).))))))))))(	chr7:150774240-150774504(-)$1	1	27	57	12.6666
(....(((.((((....)))))))..)).)	chr7:43635594-43635905(+)$1	1	107	137	10.6351
((((.((((((((....))).)))))..))	chr4:148604805-148605068(-)$1	1	79	109	11.8098
..(((((...(((....)))..)))))(((	chr19:53589268-53589640(-)$1	1	17	47	11.2514
.((((((((((((....))).))).)))))	chr6:135375602-135375899(-)$1	1	69	99	12.3165
.((((((((.(((....))).))))).)))	chr4:2513581-2513833(+)$1	1	86	116	11.7758
(((((((((.((......)).)))))))))	chr5:149824981-149825252(-)$1	1	99	129	10.4401
....(((...(((....)))...)))...)	chr11:64898802-64899047(-)$1	1	146	176	14.2316
((((((((..(((...)))...))))))))	chr1:114947880-114948150(-)$1	1	138	168	12.6578
(....(((.((((....)))).)))....)	chr6:99852262-99852514(-)$1	1	29	59	11.9616
(((((((((((((....)))..))).))))	chr5:98228081-98228335(-)$1	1	35	65	13.4333
((((((....(((....))))))))..)))	chr11:65631164-65631412(+)$1	1	159	189	12.6170
.((((.((..(((....))).)).))))))	chr5:131821193-131821475(-)$1	1	183	213	11.6366
(.((((....(((....)))...)))).))	chr4:24557734-24557980(-)$1	1	34	64	13.4564
(((((....(((.....)))....))).))	chr19:19612123-19612370(+)$1	1	73	103	9.9460
..(((((.(((((....))))).)))))..	chr12:76793480-76793761(-)$1	1	62	92	10.6236
(((.(..((((((....))))))).)))))	chr9:4740792-4741045(-)$1	1	108	138	10.5570
(((.(((.(((((....)))))))).))))	chr10:118661118-118661382(-)$1	1	194	224	10.8652
((((.....((((....))))....)).))	chr14:24034637-24034941(-)$1	1	65	95	10.5262
(((((.(...(((....)))..).))))).	chr2:27448653-27448880(+)$1	1	192	222	13.6509
)(((((((...(((...)))...)))))))	chr1:100961432-100961753(+)$1	1	161	191	12.2676
))))))(((((((....)))))))(((...	chr9:131397728-131398044(-)$1	1	190	220	10.7841
((((..(((((((....))))))).)))))	chr11:122931682-122931929(-)$1	1	164	194	11.5468
(.(((..(.((((....)))))))).))))	chr16:19721669-19721945(-)$1	1	145	175	11.4010
....(((((.(((....))).)))))...)	chr21:38610520-38610886(-)$1	1	314	344	12.3389
((((.(((.((((....)))))))))))))	chr11:47330141-47330398(+)$1	1	202	232	11.1361
((((((((..(((....)))...))))).)	chr12:7079224-7079474(-)$1	1	159	189	13.9399
(((((((.((((....)))).).)))))))	chr21:40720002-40720335(-)$1	1	16	46	10.6729
(.((((((.((((....)))).)))))).)	chr14:24911314-24911628(-)$1	1	172	202	10.6145
(.(.....(((((....)))))....).))	chr1:31465385-31465617(-)$1	1	110	140	10.4764
((((.((((.(((....))))))).)))))	chr12:108930137-108930447(-)$1	1	252	282	12.1961
(((....((((((....))))))....)))	chr8:95878444-95878680(+)$1	1	182	212	10.6835
....(((((.(((....))).)))))...)	chr11:134129489-134129832(+)$1	1	229	259	13.2037
(((.(((...(((....)))...))).)))	chr9:133753849-133754120(+)$1	1	82	112	14.5334
(((.(((((((((....)))))))))..))	chr17:80575014-80575286(-)$1	1	110	140	12.3567
((((((((((((.....))).)))))))))	chr2:69736202-69736472(-)$1	1	211	241	10.5843
((.(((..(((((....)))))..)))..)	chr2:223494682-223494972(-)$1	1	35	65	10.3447
(.(((..((((((....)))))).))).))	chr18:66358383-66358648(-)$1	1	6	36	11.1230
(((((...(..((....))..)...)))))	chr9:134405701-134405981(-)$1	1	182	212	10.5334
(((.((....(((...)))...))))))))	chr2:182757259-182757564(+)$1	1	180	210	11.3657
.((((((((((((....))))))))).)))	chr4:159791492-159791760(+)$1	1	166	196	12.5022
(((....((.(((....))).))..)))))	chr16:67765177-67765452(-)$1	1	136	166	11.7436
(((((((((((((....)))))))))))))	chr8:57878595-57878863(-)$1	1	149	179	13.6261
(((.(.((((.((....)).))))))))..	chr12:49500424-49500741(-)$1	1	21	51	9.7528

#PSSM
g : 0.14	c : 0.14	f : 0.10	e : 0.10	i : 0.07	! : 0.07	= : 0.05	b : 0.05	d : 0.03	# : 0.03	: : 0.03	[ : 0.03	$ : 0.03	h : 0.03	" : 0.01	
c : 0.16	g : 0.14	f : 0.10	e : 0.09	[ : 0.09	i : 0.07	d : 0.07	= : 0.05	# : 0.05	! : 0.03	$ : 0.03	h : 0.03	" : 0.01	: : 0.01	
c : 0.20	f : 0.14	g : 0.14	e : 0.14	i : 0.07	d : 0.07	= : 0.05	# : 0.05	$ : 0.03	b : 0.01	a : 0.01	[ : 0.01	h : 0.01	
e : 0.16	g : 0.12	[ : 0.12	f : 0.10	c : 0.10	# : 0.09	i : 0.07	d : 0.05	= : 0.05	$ : 0.05	b : 0.01	h : 0.01	
e : 0.18	c : 0.14	i : 0.10	g : 0.10	f : 0.07	# : 0.07	d : 0.05	= : 0.05	[ : 0.05	! : 0.03	a : 0.03	$ : 0.03	h : 0.01	b : 0.01	
e : 0.18	c : 0.14	i : 0.10	! : 0.09	[ : 0.09	g : 0.09	f : 0.07	= : 0.05	# : 0.05	d : 0.03	$ : 0.03	" : 0.01	b : 0.01	
e : 0.16	c : 0.14	i : 0.10	g : 0.10	# : 0.10	f : 0.07	! : 0.07	a : 0.05	= : 0.05	$ : 0.03	d : 0.03	b : 0.01	" : 0.01	
" : 0.14	i : 0.10	c : 0.10	e : 0.10	g : 0.09	f : 0.09	[ : 0.07	# : 0.07	= : 0.05	b : 0.03	$ : 0.03	d : 0.03	a : 0.01	! : 0.01	
e : 0.16	" : 0.14	[ : 0.12	# : 0.09	! : 0.07	i : 0.07	c : 0.05	= : 0.05	g : 0.05	f : 0.05	d : 0.05	$ : 0.01	a : 0.01	b : 0.01	
d : 0.18	" : 0.14	[ : 0.14	e : 0.10	! : 0.09	# : 0.07	c : 0.07	g : 0.05	f : 0.05	= : 0.03	i : 0.03	
c : 0.45	d : 0.18	e : 0.09	g : 0.05	f : 0.05	i : 0.03	# : 0.01	a : 0.01	b : 0.01	" : 0.01	! : 0.01	= : 0.01	[ : 0.01	
c : 0.47	d : 0.18	e : 0.09	g : 0.05	b : 0.05	f : 0.05	i : 0.03	# : 0.01	[ : 0.01	= : 0.01	
c : 0.43	d : 0.16	e : 0.09	g : 0.05	f : 0.05	a : 0.03	n : 0.03	i : 0.03	b : 0.03	o : 0.01	m : 0.01	= : 0.01	
m : 0.85	l : 0.05	n : 0.03	d : 0.01	o : 0.01	c : 0.01	
m : 0.85	l : 0.09	n : 0.03	o : 0.01	
m : 0.85	l : 0.09	n : 0.03	o : 0.01	
m : 0.83	d : 0.03	l : 0.03	c : 0.03	n : 0.03	o : 0.01	
c : 0.47	d : 0.18	e : 0.09	g : 0.05	f : 0.05	a : 0.03	i : 0.03	b : 0.03	o : 0.01	= : 0.01	
c : 0.47	d : 0.18	e : 0.09	g : 0.05	b : 0.05	f : 0.05	i : 0.03	4 : 0.01	] : 0.01	= : 0.01	
c : 0.43	d : 0.18	e : 0.09	g : 0.05	f : 0.05	3 : 0.03	i : 0.03	4 : 0.01	a : 0.01	b : 0.01	2 : 0.01	= : 0.01	] : 0.01	
] : 0.23	d : 0.18	3 : 0.14	e : 0.10	2 : 0.10	g : 0.05	i : 0.05	f : 0.05	4 : 0.03	= : 0.01	
3 : 0.18	e : 0.18	i : 0.09	2 : 0.09	c : 0.07	= : 0.05	g : 0.05	4 : 0.05	f : 0.05	a : 0.05	] : 0.03	b : 0.03	d : 0.03	
3 : 0.16	c : 0.14	i : 0.10	f : 0.10	e : 0.10	g : 0.07	= : 0.05	] : 0.05	b : 0.05	4 : 0.05	d : 0.03	a : 0.01	2 : 0.01	
c : 0.18	e : 0.16	i : 0.10	g : 0.10	4 : 0.07	= : 0.05	f : 0.05	3 : 0.05	] : 0.05	d : 0.05	a : 0.03	2 : 0.03	b : 0.01	
e : 0.20	c : 0.20	i : 0.10	] : 0.10	f : 0.07	g : 0.07	2 : 0.05	= : 0.05	4 : 0.05	d : 0.03	3 : 0.01	a : 0.01	
e : 0.21	c : 0.16	i : 0.10	g : 0.10	f : 0.09	2 : 0.05	d : 0.05	= : 0.05	4 : 0.05	] : 0.05	b : 0.01	h : 0.01	
e : 0.14	f : 0.12	g : 0.12	c : 0.12	i : 0.07	d : 0.05	= : 0.05	b : 0.05	2 : 0.05	] : 0.05	3 : 0.05	4 : 0.03	a : 0.01	h : 0.01	
f : 0.14	e : 0.14	g : 0.12	] : 0.10	c : 0.10	i : 0.07	= : 0.05	2 : 0.05	3 : 0.05	d : 0.03	b : 0.03	4 : 0.01	r : 0.01	h : 0.01	
g : 0.14	f : 0.12	e : 0.12	c : 0.12	i : 0.07	d : 0.07	] : 0.07	3 : 0.07	= : 0.05	2 : 0.05	4 : 0.03	r : 0.01	h : 0.01	
f : 0.16	g : 0.16	c : 0.14	e : 0.12	i : 0.05	= : 0.05	2 : 0.05	d : 0.05	] : 0.03	h : 0.03	: : 0.01	a : 0.01	4 : 0.01	r : 0.01	b : 0.01	3 : 0.01	

#score	651.4517143054368
#seq	55
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF878JOG_HNRNPM_CDS_m1_run2.txt

#BEAR
hccc[ccc[ccc[ccclllccc22ccc]ccc]cc	chr2:231902561-231902869(+)$1	308	186	220	15.1345
a!!abb[ccc!!bboooooobb22cccbb]a22a	chr6:32940774-32941007(+)$1	233	165	199	12.1221
ccc[eeeee####cccmmmmccc22eeeee22cc	chr3:99567523-99567841(+)$1	318	186	220	11.7252
ccc[gggggggeeeeellleeeee4444gggggg	chr17:29622740-29622984(+)$1	244	143	177	11.9490
f"""ggggggg[cccoooooocccggggggg333	chr17:74288569-74288819(-)$1	250	131	165	14.6597
ddd[iiiiiiiiiooooooiiiiiiiiidddd]b	chr2:97482368-97482640(+)$1	272	124	158	12.8349
bb[eeeee!!cccooooooccc22eeeee]bb]e	chr17:74288199-74288433(-)$1	234	102	136	12.8420
b[a[ggggggg!!ccclllccc22ggggggg]a]	chr17:74288818-74289081(-)$1	263	213	247	16.0651
ccc####ccccccooooooccc]ccc22ccc22g	chr3:99549300-99549541(+)$1	241	26	60	13.6646
ggggggg"""ddddoooooodddd333ggggggg	chr3:99567453-99567697(+)$1	244	0	34	12.7549
ddd[iiiiiiiiiooooooiiiiiiiiidddd]b	chr2:97482449-97482776(+)$1	327	43	77	12.8349
hhhhhhhh####cccmmmmccc4444hhhhhhhh	chr17:80789358-80789625(+)$1	267	0	34	11.8108
c!!a[eeeee!!cccmmmmccc22eeeee]a]cc	chr11:66391291-66391539(+)$1	248	53	87	13.3992
ggggggg[bb[cccooooooccc]bb]ggggggg	chr12:50898802-50899051(+)$1	249	15	49	13.2771
=========####ccclllccc22==========	chr12:50135945-50136257(+)$1	312	211	245	16.6487
bb[cccccc[a!!ccclllccc]a]ccc]ccc]b	chr17:74288346-74288606(-)$1	260	208	242	14.4634
dd!!gggggggacccooooooccc]a]ggggggg	chr7:6071026-6071307(-)$1	281	44	78	13.9418
iiiii[eeeee!!ccclllccc22eeeee22iii	chr19:59073422-59073737(+)$1	315	111	145	14.2011
ccc[dddd[a!!ddddllldddd22a]ddddccc	chr7:6074953-6075200(-)$1	247	47	81	11.5216
cc===========oooooo===========ccc[	chr20:32255395-32255638(-)$1	243	164	198	14.4891
gggggg"""ggggggglllgggggggggggggg]	chr9:139115446-139115710(-)$1	264	119	153	13.6658
====!!dddd"""bbmmmmbb333dddd======	chr12:27132598-27132880(-)$1	282	31	65	11.6502
c####===========mmmm===========444	chr17:80789584-80789875(+)$1	291	164	198	13.3839
gggg[a####bb[ccclllccc]bb4444a]ggg	chr6:32940753-32940974(+)$1	221	121	155	12.8603
cc[cccccc[a!!ccclllccc]a]ccc]ccc]c	chr17:74288258-74288504(-)$1	246	106	140	15.1869
:ccc[cccgggggggmmmmggggggg]ccc22cc	chr19:59073599-59073870(+)$1	271	0	34	10.9145
d:bb[hhhhhhhhccclllccc22hhhhhhhh]b	chr11:940686-940966(+)$1	280	89	123	11.5683
ccc[ggggggg[aooooooa]gggggggccc::f	chr14:24002712-24003013(+)$1	301	167	201	11.7401
iiiii"""ddddoooooodddd333iiiiiiiii	chr3:99567289-99567536(+)$1	247	166	200	12.3526
ceeeeebb[ggggggglllggggggg]bb333ee	chr3:185538711-185538987(-)$1	276	204	238	11.1834
hh!!ggggggg!!ccclllccc22ggggggg22h	chr17:74288036-74288310(-)$1	274	165	199	16.2387
cc[eeeee!!cccooooooccc22eeeee]ccc]	chr17:29632112-29632463(+)$1	351	147	181	13.8152
==========[ccc[annnnna]ccc]=======	chr7:141478453-141478703(+)$1	250	53	87	12.8160
g!!hhhhhhhh!!ccclllccc22hhhhhhhh22	chr17:74288881-74289131(-)$1	250	143	177	14.0727
fggggggg"""ddddmmmmdddd4444ggggggg	chr16:48399219-48399570(-)$1	351	228	262	11.5651
bb!!ccc[dddd[ccclllcccddddcccbb]cc	chr7:923706-923945(+)$1	239	125	159	12.1048
c####ccc!!cccoooooocccccc333ccc22h	chr1:247094471-247094745(-)$1	274	88	122	14.4117
bb[ccccccgggggggmmmmggggggg22ccc]c	chr19:56188480-56188734(+)$1	254	26	60	11.2072
cc[ccc"""eeeeebblllbb]eeeee22ccc]c	chr17:74288684-74288958(-)$1	274	137	171	10.7440
dddd!!a!!ggggggglllggggggg22a22ddd	chr2:3322522-3322750(-)$1	228	1	35	11.3292
g!!hhhhhhhh!!ccclllccc22hhhhhhhh22	chr17:74288931-74289173(-)$1	242	185	219	14.0727
=========[ccccccmmmmccc]ccc=======	chr17:80788037-80788281(+)$1	244	112	146	13.8789
f"""ggggggg[cccoooooocccggggggg333	chr17:74288472-74288769(-)$1	297	81	115	14.6597
!!eeeeea[ccc[ccclllcccccc]a22eeeee	chr17:74287802-74288027(-)$1	225	87	121	12.1486
!!ccc[ddddcccooooooccc]dddd]ccc22d	chr2:11721003-11721259(+)$1	256	48	82	12.5076
iiiiiiiii!!cccnnnnnccc333iiiiiiiii	chr14:39736596-39736838(+)$1	242	207	241	14.6918
gggggggdddd[cccmmmmccc22dddd]ggggg	chr2:231902504-231902747(+)$1	243	57	91	12.8157

#otherMatches

#Seq PSSM
GGCGCCGGGGCUGCGGCUGCUGGAGGCGCUGUUG	chr2:231902561-231902869(+)$1	308	186	220	15.1345
GCCCAGUCUUAACCGAGUCAGGCAGAGCUAGUUU	chr6:32940774-32941007(+)$1	233	165	199	12.1221
GGUAUCACUGCAGUACUCGUGUAAGAGUGAGGAC	chr3:99567523-99567841(+)$1	318	186	220	11.7252
UACUACUGAGGUUGAGAACCUCGAGACUUCUUAG	chr17:29622740-29622984(+)$1	244	143	177	11.9490
AGCAUGGUUUGGUACAAUCUGGUGCAGAUCAGAG	chr17:74288569-74288819(-)$1	250	131	165	14.6597
CGCUGGCGCCUGCCGAGGUGCAGGUGCUGCGCGA	chr2:97482368-97482640(+)$1	272	124	158	12.8349
uggaucagcgugguuugguucaaccuggugcagu	chr17:74288199-74288433(-)$1	234	102	136	12.8420
AGCAUGAUUUGGUCCAAUCUGGCACAGGUCAGGG	chr17:74288818-74289081(-)$1	263	213	247	16.0651
GCCAUUUUGGUAAAUAGGCUUAUCCAUAGGCACU	chr3:99549300-99549541(+)$1	241	26	60	13.6646
UGGUUCUGGGGAGCGUCCCUGCUCAGGAGAGCUA	chr3:99567453-99567697(+)$1	244	0	34	12.7549
CGCUGGCGCCUGCCGAGGUGCAGGUGCUGCGCGA	chr2:97482449-97482776(+)$1	327	43	77	12.8349
UGGCCUGUAAAAUCCGUAAGGAAUCGGCAGGUUA	chr17:80789358-80789625(+)$1	267	0	34	11.8108
UUUUGUUCUGCUGGUUUGUACUUACAGGAGAUGU	chr11:66391291-66391539(+)$1	248	53	87	13.3992
GCUCGGCGGCCGGAGCCGGAUCCUGUAGCCGGGU	chr12:50898802-50899051(+)$1	249	15	49	13.2771
GCCUACUUGCUGGACCUGUGGUAACAAGUAGGCU	chr12:50135945-50136257(+)$1	312	211	245	16.6487
ccuggugcaguucagcgugguuuggugcaaccug	chr17:74288346-74288606(-)$1	260	208	242	14.4634
CUGACUUUUUUCCAGAAGUGACUGAGCAGAAAAG	chr7:6071026-6071307(-)$1	281	44	78	13.9418
GGUGGGUGCGCAGAUGCUGCGUGAGCGUGGGCCG	chr19:59073422-59073737(+)$1	315	111	145	14.2011
GCCUGGUUUUGCCCACGUGGUGGAAGUGACUGGC	chr7:6074953-6075200(-)$1	247	47	81	11.5216
CCGCAGGUAGCGCGACAGGGUGCUGCCUGCCACG	chr20:32255395-32255638(-)$1	243	164	198	14.4891
GCUCCAGGUGUCACACGUGGUGUGAUUGGGGUUG	chr9:139115446-139115710(-)$1	264	119	153	13.6658
GUCACUGGAAGCGUCGGUGGAAUGUUCUUGGUAG	chr12:27132598-27132880(-)$1	282	31	65	11.6502
GAAAGACACGGCCUUGGCAGUGGGGUUGUGUAAA	chr17:80789584-80789875(+)$1	291	164	198	13.3839
GGCUCGGCUACUGCUCGUGGAGGGGAAUACAGGU	chr6:32940753-32940974(+)$1	221	121	155	12.8603
ccuggugcaguucagcgugguuuggugcaaccug	chr17:74288258-74288504(-)$1	246	106	140	15.1869
CGUAGGGCCGUUCACCCGUGUGGAUGCGCCGGUG	chr19:59073599-59073870(+)$1	271	0	34	10.9145
cagugCCUGCCAACCUGAAGGGCUUUGGCAGGGG	chr11:940686-940966(+)$1	280	89	123	11.5683
GCCUCUGGUGGACUUCCCUGCCCACCAGGGCCCG	chr14:24002712-24003013(+)$1	301	167	201	11.7401
GUUCUGGGGAGCGUCCCUGCUCAGGAGAGCUAGC	chr3:99567289-99567536(+)$1	247	166	200	12.3526
AACCAAAGCUUUUAUGUUAUAUGGAGACUAUUUU	chr3:185538711-185538987(-)$1	276	204	238	11.1834
agcgugguuugauccaaccuggugcagaucagcc	chr17:74288036-74288310(-)$1	274	165	199	16.2387
GUGAACACGGCUUGCUGGGAGGAGGUGUUGGCUA	chr17:29632112-29632463(+)$1	351	147	181	13.8152
UACGGAAAGGUCAGUCUACCUGUCUGCUUUUUUU	chr7:141478453-141478703(+)$1	250	53	87	12.8160
agucugguuuggcccaaccuggugcagaucagcg	chr17:74288881-74289131(-)$1	250	143	177	14.0727
UCUUGUUCACAUGUUUACCAGCGGCCAGGACAAG	chr16:48399219-48399570(-)$1	351	228	262	11.5651
GGUCGGUGCAUGCGGUUCUGCCCGUGGCCCCACU	chr7:923706-923945(+)$1	239	125	159	12.1048
UAAUCUCGGACCGGAGGAGCGGCGGCACAUGGCG	chr1:247094471-247094745(-)$1	274	88	122	14.4117
UCUCCCUCUGUGGCUUCUUGGAGCCGCAUAGAUG	chr19:56188480-56188734(+)$1	254	26	60	11.2072
CCUGGUGUAGAUCAGCCUGGCAUGGUCCAACCUG	chr17:74288684-74288958(-)$1	274	137	171	10.7440
AUUCCUUCUUGUCUUUUUAGGAGACAUCAUAGAA	chr2:3322522-3322750(-)$1	228	1	35	11.3292
agucugguuuggcccaaccuggugcagaucagcg	chr17:74288931-74289173(-)$1	242	185	219	14.0727
ACACUGGGCCUCUUGGCUCUCCAUGGAGCUCAGU	chr17:80788037-80788281(+)$1	244	112	146	13.8789
AGCAUGGUUUGGUACAAUCUGGUGCAGAUCAGAG	chr17:74288472-74288769(-)$1	297	81	115	14.6597
AUAUCCACGUGGUCUGGUGCAGCCAGGAAUGGAU	chr17:74287802-74288027(-)$1	225	87	121	12.1486
GCCUCCUGGAGUCUGAUGUGGCUUCCAUGAGAGU	chr2:11721003-11721259(+)$1	256	48	82	12.5076
UUGGGGUCUAAGCCGCCGUGGUCAGAGGUCCCGA	chr14:39736596-39736838(+)$1	242	207	241	14.6918
ggcggcggcggcggcgCGCGCCAUCCGCUCGCCG	chr2:231902504-231902747(+)$1	243	57	91	12.8157

#DB
((((.(((.(((.(((...)))..))).))).))	chr2:231902561-231902869(+)$1	1	186	220	15.1345
(..(((.(((..((......))..))))).)..)	chr6:32940774-32941007(+)$1	1	165	199	12.1221
(((.(((((....(((....)))..)))))..))	chr3:99567523-99567841(+)$1	1	186	220	11.7252
(((.((((((((((((...)))))....))))))	chr17:29622740-29622984(+)$1	1	143	177	11.9490
(...(((((((.(((......))))))))))...	chr17:74288569-74288819(-)$1	1	131	165	14.6597
(((.(((((((((......))))))))))))).)	chr2:97482368-97482640(+)$1	1	124	158	12.8349
((.(((((..(((......)))..))))).)).)	chr17:74288199-74288433(-)$1	1	102	136	12.8420
(.(.(((((((..(((...)))..))))))).).	chr17:74288818-74289081(-)$1	1	213	247	16.0651
(((....((((((......))).)))..)))..)	chr3:99549300-99549541(+)$1	1	26	60	13.6646
(((((((...((((......))))...)))))))	chr3:99567453-99567697(+)$1	1	0	34	12.7549
(((.(((((((((......))))))))))))).)	chr2:97482449-97482776(+)$1	1	43	77	12.8349
((((((((....(((....)))....))))))))	chr17:80789358-80789625(+)$1	1	0	34	11.8108
(..(.(((((..(((....)))..))))).).))	chr11:66391291-66391539(+)$1	1	53	87	13.3992
(((((((.((.(((......))).)).)))))))	chr12:50898802-50899051(+)$1	1	15	49	13.2771
(((((((((....(((...)))..))))))))))	chr12:50135945-50136257(+)$1	1	211	245	16.6487
((.((((((.(..(((...))).).))).))).)	chr17:74288346-74288606(-)$1	1	208	242	14.4634
((..(((((((((((......))).).)))))))	chr7:6071026-6071307(-)$1	1	44	78	13.9418
(((((.(((((..(((...)))..)))))..)))	chr19:59073422-59073737(+)$1	1	111	145	14.2011
(((.((((.(..((((...))))..).)))))))	chr7:6074953-6075200(-)$1	1	47	81	11.5216
))(((((((((((......)))))))))))(((.	chr20:32255395-32255638(-)$1	1	164	198	14.4891
((((((...(((((((...)))))))))))))).	chr9:139115446-139115710(-)$1	1	119	153	13.6658
((((..((((...((....))...))))))))))	chr12:27132598-27132880(-)$1	1	31	65	11.6502
(....(((((((((((....)))))))))))...	chr17:80789584-80789875(+)$1	1	164	198	13.3839
((((.(....((.(((...))).))....).)))	chr6:32940753-32940974(+)$1	1	121	155	12.8603
((.((((((.(..(((...))).).))).))).)	chr17:74288258-74288504(-)$1	1	106	140	15.1869
.(((.((((((((((....))))))).)))..))	chr19:59073599-59073870(+)$1	1	0	34	10.9145
).((.(((((((((((...)))..)))))))).)	chr11:940686-940966(+)$1	1	89	123	11.5683
(((.(((((((.(......).))))))))))..(	chr14:24002712-24003013(+)$1	1	167	201	11.7401
(((((...((((......))))...)))))))))	chr3:99567289-99567536(+)$1	1	166	200	12.3526
((((((((.(((((((...))))))).))...))	chr3:185538711-185538987(-)$1	1	204	238	11.1834
((..(((((((..(((...)))..)))))))..)	chr17:74288036-74288310(-)$1	1	165	199	16.2387
((.(((((..(((......)))..))))).))).	chr17:29632112-29632463(+)$1	1	147	181	13.8152
((((((((((.(((.(.....).))).)))))))	chr7:141478453-141478703(+)$1	1	53	87	12.8160
(..((((((((..(((...)))..))))))))..	chr17:74288881-74289131(-)$1	1	143	177	14.0727
)(((((((...((((....))))....)))))))	chr16:48399219-48399570(-)$1	1	228	262	11.5651
((..(((.((((.(((...)))))))))))).))	chr7:923706-923945(+)$1	1	125	159	12.1048
(....(((..(((......))))))...)))..)	chr1:247094471-247094745(-)$1	1	88	122	14.4117
((.(((((((((((((....)))))))..))).)	chr19:56188480-56188734(+)$1	1	26	60	11.2072
((.(((...(((((((...)).)))))..))).)	chr17:74288684-74288958(-)$1	1	137	171	10.7440
((((..(..(((((((...)))))))..)..)))	chr2:3322522-3322750(-)$1	1	1	35	11.3292
(..((((((((..(((...)))..))))))))..	chr17:74288931-74289173(-)$1	1	185	219	14.0727
(((((((((.((((((....))).))))))))))	chr17:80788037-80788281(+)$1	1	112	146	13.8789
(...(((((((.(((......))))))))))...	chr17:74288472-74288769(-)$1	1	81	115	14.6597
..((((((.(((.(((...)))))).)..)))))	chr17:74287802-74288027(-)$1	1	87	121	12.1486
..(((.(((((((......))).)))).)))..)	chr2:11721003-11721259(+)$1	1	48	82	12.5076
(((((((((..(((.....)))...)))))))))	chr14:39736596-39736838(+)$1	1	207	241	14.6918
(((((((((((.(((....)))..)))).)))))	chr2:231902504-231902747(+)$1	1	57	91	12.8157

#PSSM
c : 0.27	g : 0.14	d : 0.10	b : 0.10	= : 0.08	h : 0.06	f : 0.06	i : 0.06	! : 0.04	a : 0.02	: : 0.02	
c : 0.23	! : 0.12	g : 0.12	d : 0.08	b : 0.08	= : 0.08	i : 0.06	" : 0.04	h : 0.04	# : 0.04	[ : 0.02	: : 0.02	e : 0.02	
c : 0.17	! : 0.14	[ : 0.12	g : 0.12	= : 0.10	d : 0.06	i : 0.06	" : 0.04	# : 0.04	e : 0.04	a : 0.02	h : 0.02	b : 0.02	
c : 0.14	[ : 0.14	g : 0.12	= : 0.10	e : 0.08	# : 0.06	h : 0.06	! : 0.06	i : 0.06	a : 0.04	" : 0.04	b : 0.02	d : 0.02	
g : 0.25	c : 0.12	[ : 0.10	e : 0.10	i : 0.10	= : 0.08	# : 0.06	h : 0.06	! : 0.04	b : 0.02	d : 0.02	
g : 0.25	c : 0.17	e : 0.12	= : 0.10	h : 0.08	i : 0.06	[ : 0.04	! : 0.04	b : 0.02	# : 0.02	d : 0.02	a : 0.02	" : 0.02	
g : 0.23	c : 0.14	e : 0.12	= : 0.10	h : 0.08	i : 0.06	d : 0.06	" : 0.06	# : 0.04	[ : 0.02	b : 0.02	a : 0.02	
c : 0.17	g : 0.17	e : 0.10	= : 0.10	" : 0.08	h : 0.08	d : 0.08	i : 0.06	[ : 0.04	# : 0.02	b : 0.02	! : 0.02	a : 0.02	
g : 0.17	c : 0.10	= : 0.10	d : 0.10	[ : 0.08	! : 0.08	" : 0.08	e : 0.06	i : 0.06	h : 0.06	# : 0.04	b : 0.02	
g : 0.25	d : 0.10	c : 0.08	# : 0.08	! : 0.08	e : 0.06	[ : 0.06	= : 0.06	h : 0.06	i : 0.04	" : 0.04	b : 0.02	a : 0.02	
g : 0.25	c : 0.17	! : 0.08	d : 0.08	# : 0.06	h : 0.06	i : 0.04	[ : 0.04	a : 0.04	e : 0.04	= : 0.04	" : 0.04	b : 0.02	
c : 0.23	! : 0.21	g : 0.10	[ : 0.08	d : 0.08	# : 0.06	e : 0.04	i : 0.04	= : 0.04	a : 0.02	" : 0.02	b : 0.02	h : 0.02	
c : 0.31	! : 0.14	g : 0.10	[ : 0.08	d : 0.06	# : 0.04	e : 0.04	i : 0.04	= : 0.04	b : 0.02	" : 0.02	h : 0.02	a : 0.02	o : 0.02	
c : 0.51	o : 0.21	g : 0.10	d : 0.06	b : 0.04	e : 0.04	= : 0.02	
c : 0.44	o : 0.27	g : 0.10	d : 0.04	b : 0.04	e : 0.02	= : 0.02	[ : 0.02	n : 0.02	
o : 0.34	c : 0.31	m : 0.12	g : 0.08	e : 0.02	d : 0.02	= : 0.02	a : 0.02	b : 0.02	n : 0.02	
l : 0.40	o : 0.34	m : 0.21	n : 0.04	
l : 0.40	o : 0.34	m : 0.21	n : 0.04	
l : 0.40	o : 0.31	m : 0.21	n : 0.04	d : 0.02	
c : 0.46	o : 0.12	m : 0.08	g : 0.08	d : 0.06	i : 0.04	b : 0.04	e : 0.02	= : 0.02	a : 0.02	n : 0.02	
c : 0.53	g : 0.10	d : 0.08	b : 0.06	o : 0.06	i : 0.04	= : 0.04	e : 0.02	] : 0.02	n : 0.02	
c : 0.59	g : 0.12	d : 0.08	i : 0.04	= : 0.04	b : 0.02	e : 0.02	3 : 0.02	a : 0.02	] : 0.02	
2 : 0.27	c : 0.17	] : 0.12	g : 0.12	d : 0.08	3 : 0.06	e : 0.04	i : 0.04	= : 0.04	4 : 0.02	
2 : 0.31	c : 0.14	g : 0.12	d : 0.06	3 : 0.06	e : 0.04	i : 0.04	4 : 0.04	] : 0.04	a : 0.04	= : 0.04	b : 0.02	
g : 0.21	c : 0.14	e : 0.10	d : 0.08	4 : 0.06	3 : 0.06	= : 0.06	] : 0.06	h : 0.06	2 : 0.04	i : 0.04	b : 0.04	
g : 0.21	c : 0.14	e : 0.12	4 : 0.08	i : 0.08	d : 0.08	= : 0.06	h : 0.06	3 : 0.04	a : 0.04	b : 0.02	] : 0.02	
g : 0.14	c : 0.12	e : 0.12	] : 0.12	i : 0.08	h : 0.08	4 : 0.06	= : 0.06	d : 0.06	2 : 0.04	3 : 0.04	a : 0.02	
g : 0.21	e : 0.10	2 : 0.10	= : 0.10	i : 0.08	h : 0.08	c : 0.08	d : 0.06	] : 0.04	b : 0.04	4 : 0.04	3 : 0.02	
g : 0.21	c : 0.14	= : 0.12	e : 0.10	h : 0.08	d : 0.06	] : 0.06	2 : 0.06	b : 0.04	i : 0.04	4 : 0.02	a : 0.02	
g : 0.23	c : 0.21	= : 0.12	] : 0.08	h : 0.08	d : 0.06	e : 0.04	2 : 0.04	i : 0.04	a : 0.02	3 : 0.02	b : 0.02	
c : 0.23	g : 0.23	= : 0.10	2 : 0.08	h : 0.08	d : 0.06	a : 0.04	b : 0.04	i : 0.04	] : 0.02	3 : 0.02	e : 0.02	
g : 0.17	2 : 0.14	c : 0.14	] : 0.08	h : 0.08	= : 0.08	3 : 0.06	d : 0.06	i : 0.06	b : 0.02	4 : 0.02	: : 0.02	e : 0.02	
c : 0.17	g : 0.17	] : 0.17	2 : 0.14	= : 0.08	i : 0.06	3 : 0.04	e : 0.04	a : 0.02	h : 0.02	4 : 0.02	: : 0.02	d : 0.02	
c : 0.19	g : 0.17	b : 0.08	= : 0.08	e : 0.06	] : 0.06	h : 0.06	i : 0.06	3 : 0.04	2 : 0.04	d : 0.04	a : 0.02	[ : 0.02	4 : 0.02	f : 0.02	

#score	617.9276361067998
#seq	47
#width	34
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF469SRC_SAFB_CDS_m3_run1.txt

#BEAR
##eeeee"""gggggggnnnnnggggggg>>>>>>>>>>>	chr1:203767352-203767657(+)$1	305	179	219	21.3450
dddd!!dddd!!eeeeellleeeee22dddd22dddda]f	chr11:65349330-65349623(+)$1	293	216	256	20.1311
dddd$$$$$gggggggooooooggggggg4444dddd:::	chr13:33110251-33110486(-)$1	235	163	203	19.4495
dddd[dddd$$$$$cccnnnnnccc333dddd]dddd444	chr10:88259703-88260066(-)$1	363	256	296	22.1974

#otherMatches

#Seq PSSM
GGGUAGGCCAGGGUCCCACUUAGGGACUUCAACACUUCAA	chr1:203767352-203767657(+)$1	305	179	219	21.3450
CAGGACCAGGGAUGAGGCUCCCUCAGGCCUGAGCCUGCCC	chr11:65349330-65349623(+)$1	293	216	256	20.1311
CUCUUCCCAGUUUGAACUAUCAUUUAAACAUUCAGAGAUU	chr13:33110251-33110486(-)$1	235	163	203	19.4495
GUCUCAGAAAAAAGGCAGAUAUUGCAACUUCUAAGACUAC	chr10:88259703-88260066(-)$1	363	256	296	22.1974

#DB
..(((((...(((((((.....)))))))...........	chr1:203767352-203767657(+)$1	1	179	219	21.3450
((((..((((..(((((...)))))..))))..))))).)	chr11:65349330-65349623(+)$1	1	216	256	20.1311
((((.....(((((((......)))))))....))))...	chr13:33110251-33110486(-)$1	1	163	203	19.4495
((((.((((.....(((.....)))...)))).))))...	chr10:88259703-88260066(-)$1	1	256	296	22.1974

#PSSM
d : 0.75	# : 0.25	
d : 0.75	# : 0.25	
d : 0.75	e : 0.25	
d : 0.75	e : 0.25	
e : 0.25	! : 0.25	$ : 0.25	[ : 0.25	
e : 0.25	! : 0.25	$ : 0.25	d : 0.25	
d : 0.50	e : 0.25	$ : 0.25	
d : 0.50	" : 0.25	$ : 0.25	
d : 0.50	" : 0.25	$ : 0.25	
" : 0.25	d : 0.25	g : 0.25	$ : 0.25	
g : 0.50	! : 0.25	$ : 0.25	
g : 0.50	! : 0.25	$ : 0.25	
g : 0.50	e : 0.25	$ : 0.25	
g : 0.50	e : 0.25	$ : 0.25	
g : 0.50	e : 0.25	c : 0.25	
g : 0.50	e : 0.25	c : 0.25	
g : 0.25	e : 0.25	o : 0.25	c : 0.25	
n : 0.50	l : 0.25	o : 0.25	
n : 0.50	l : 0.25	o : 0.25	
n : 0.50	l : 0.25	o : 0.25	
n : 0.50	e : 0.25	o : 0.25	
n : 0.50	e : 0.25	o : 0.25	
g : 0.50	e : 0.25	c : 0.25	
g : 0.50	e : 0.25	c : 0.25	
g : 0.50	e : 0.25	c : 0.25	
g : 0.50	2 : 0.25	3 : 0.25	
g : 0.50	2 : 0.25	3 : 0.25	
g : 0.50	d : 0.25	3 : 0.25	
g : 0.50	d : 0.50	
d : 0.50	> : 0.25	4 : 0.25	
d : 0.50	> : 0.25	4 : 0.25	
> : 0.25	2 : 0.25	4 : 0.25	d : 0.25	
> : 0.25	2 : 0.25	4 : 0.25	] : 0.25	
d : 0.75	> : 0.25	
d : 0.75	> : 0.25	
d : 0.75	> : 0.25	
d : 0.75	> : 0.25	
> : 0.25	a : 0.25	: : 0.25	4 : 0.25	
> : 0.25	] : 0.25	: : 0.25	4 : 0.25	
> : 0.25	f : 0.25	: : 0.25	4 : 0.25	

#score	83.12322646982501
#seq	4
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF451AQL_LIN28B_CDS_m1_run2.txt

#BEAR
ccc!!iiiiiiiiiooooooiiiiiiiii2	chr15:76577876-76578080(-)$1	204	71	101	15.9233
Gffffffgggggggooooooggggggg]ff	chr16:18573121-18573332(-)$1	211	147	177	13.8180
""ccc[ccc[ddddoooooodddd]ccc]c	chr11:67046852-67047091(+)$1	239	8	38	14.0879
dd[==========[bblllbb]========	chr15:90335659-90335895(-)$1	236	2	32	11.1208
:iiiiiiiii[cccooooooccc22iiiii	chr14:21484888-21485277(-)$1	389	202	232	15.6522
ceeeeeccc"""cccnnnnnccc333ccc2	chr19:39191209-39191452(+)$1	243	196	226	10.4158
c####eeeee[cccooooooccc22eeeee	chr10:13364815-13365031(-)$1	216	138	168	13.9195
$a[============nnnnn==========	chr10:15257894-15258122(-)$1	228	49	79	13.3998
!ccc[cccbb[cccooooooccc]bb]ccc	chr14:31641060-31641265(-)$1	205	144	174	14.1285
ffffff[gggggggooooooggggggg333	chr1:31744206-31744448(-)$1	242	191	221	14.8361
=========eeeeeooooooeeeee333==	chr17:26723039-26723293(-)$1	254	145	175	15.0993
f[ccc[bb[eeeeeooooooeeeee]bbcc	chr8:48689303-48689557(-)$1	254	5	35	12.6927
:::ggggggg[cccooooooccc22ggggg	chr21:18931191-18931462(+)$1	271	51	81	13.0188
b!!ccc[gggggggoooooogggggggccc	chr17:73491273-73491536(+)$1	263	109	139	15.4217
gggg[a[a[ccc[aooooooa]ccc]aa]g	chr2:216292869-216293082(-)$1	213	11	41	14.9719
======[eeeee[aooooooa]eeeee===	chr9:95049971-95050181(-)$1	210	97	127	14.9328
dd[bb[a!!eeeeeooooooeeeee]a]bb	chr11:68131248-68131479(+)$1	231	158	188	12.5983
ccdddd[ddddcccooooooccc]dddddd	chr12:109539606-109539852(+)$1	246	90	120	12.4140
===========!!aooooooa22=======	chr17:12011004-12011236(+)$1	232	36	66	16.4786
b####bb[dddd[aooooooa]dddd]bb4	chr7:103151307-103151548(-)$1	241	134	164	12.8050
i!!ccca[gggggggnnnnnggggggg]a]	chr4:166405594-166405854(+)$1	260	185	215	11.6991
+==========!!arrrrrrrrra22====	chr9:131346014-131346287(+)$1	273	82	112	11.2097
ggggggg[ccc[cccnnnnncccccc]ggg	chr1:93299063-93299297(+)$1	234	114	144	11.2973
[a[ggggggg!!cccmmmmccc]ggggggg	chr2:216229596-216229804(-)$1	208	69	99	10.8886
iiiiiiiiddddbboooooobb]dddd]ii	chr1:76260166-76260449(+)$1	283	19	49	13.2351
""ccc[bb!!ddddooooooddddbbccc]	chr6:42980114-42980412(-)$1	298	71	101	13.2653
ccc!!iiiiiiiiiooooooiiiiiiiii2	chr14:102446689-102446929(+)$1	240	105	135	15.9233
"""ffffff!!cccooooooccc22fffff	chr3:133489253-133489464(+)$1	211	123	153	14.4503
ddd[dddd!!ddddoooooodddd22dddd	chr6:143823496-143823803(-)$1	307	58	88	11.6645
##dddd!!ffffffooooooffffff4444	chr19:7621343-7621555(+)$1	212	100	130	12.7995
[ccc####ffffffooooooffffff22cc	chr15:72499367-72499580(-)$1	213	132	162	13.0362
ggg[bb[gggggggoooooogggggggbb]	chr20:24950783-24951072(-)$1	289	235	265	14.5781
!!ccc[dddd[cccoooooocccdddd333	chr6:30690603-30690837(+)$1	234	137	167	14.4401
======[eeeee[aooooooa]eeeee===	chr9:95049981-95050222(-)$1	241	138	168	14.9328
e[ccc!!gggggggooooooggggggg22c	chr10:72619028-72619288(+)$1	260	74	104	14.9767
dddd[bbgggggggooooooggggggg]bb	chr5:140962963-140963244(-)$1	281	40	70	13.5628
===========[bblllbb22=========	chr10:33212445-33212767(-)$1	322	249	279	10.8399
ggggggg[ffffffooooooffffff]ggg	chr6:90428199-90428440(-)$1	241	150	180	13.7286
cc!!iiiiiiiiibbnnnnnbb]iiiiiii	chr17:20924412-20924634(-)$1	222	104	134	11.4041
iiiiiiii"""cccooooooccc4444iii	chr3:133482946-133483171(+)$1	225	21	51	16.1255
!!a[ccc"""ddddoooooodddd]ccc]a	chr15:101866542-101866786(-)$1	244	78	108	14.2088
ggccc[gggggggaooooooa]ggggggg]	chr1:20980084-20980337(-)$1	253	162	192	15.6793
hhhhhhhh!!ddddoooooodddd]hhhhh	chr11:62292823-62293063(-)$1	240	166	196	11.7982
%%%eeeee"""cccooooooccc333eeee	chr7:107593873-107594111(-)$1	238	12	42	12.7329
:::ccc"""a[cccooooooccca333ccc	chr11:68153685-68153948(+)$1	263	214	244	12.8425
!!ffffff"""cccooooooccc22fffff	chr7:103322468-103322681(-)$1	213	48	78	14.3727
fff####bb!!cccooooooccc22bbfff	chr20:17639650-17639876(-)$1	226	57	87	13.4438
ffffff!!ccc!!aooooooa22ccc]fff	chr22:25016790-25017073(+)$1	283	89	119	13.1985
cc!!==========lll==========]cc	chr19:47423349-47423680(+)$1	331	51	81	12.9378
::============oooooo==========	chr11:9459392-9459622(+)$1	230	183	213	15.2417
ggg[gggggggrrrrrrrrrgggggggggg	chr14:31380146-31380415(-)$1	269	56	86	10.7755

#otherMatches

#Seq PSSM
GCUAACAGGUGCCAAAGUGGUGGUAUCUGG	chr15:76577876-76578080(-)$1	204	71	101	15.9233
cccgccgcccggcgccgAGUCGCCGGGCCG	chr16:18573121-18573332(-)$1	211	147	177	13.8180
GAUGACCUGCAGGAAUCCUGUCCUCCAGAU	chr11:67046852-67047091(+)$1	239	8	38	14.0879
CAGAGCCUUAGGCAGGGUGCCGGCCUGGGG	chr15:90335659-90335895(-)$1	236	2	32	11.1208
AGCUAAGCUUGGGCUGGGCUGCUUGGGGCU	chr14:21484888-21485277(-)$1	389	202	232	15.6522
CACAGCGGUCCCCAGAGACCCUGCCCACCC	chr19:39191209-39191452(+)$1	243	196	226	10.4158
GAGCAAGGCCUGCGGAAACAUGUUCGGCCU	chr10:13364815-13365031(-)$1	216	138	168	13.9195
CGGUGUUUCUUUUGGCCAUUUUAGGAGGAA	chr10:15257894-15258122(-)$1	228	49	79	13.3998
AAGGUCAUCAUCAUUACAUUAUGCUGCAUG	chr14:31641060-31641265(-)$1	205	144	174	14.1285
UUAUCUUUUGUCCAAUGCAAUGGACAAUAC	chr1:31744206-31744448(-)$1	242	191	221	14.8361
AGACAGCUGGGCAGAGGGAGCUGCUAGUCA	chr17:26723039-26723293(-)$1	254	145	175	15.0993
UCUUCUAGAAUUUUGAACAGAAAAUGCUGA	chr8:48689303-48689557(-)$1	254	5	35	12.6927
AAAGUAAGUUCCAUUCUCUUAUGUAAAUUU	chr21:18931191-18931462(+)$1	271	51	81	13.0188
AAGGGCUCCUCCUCAUGGAGGAGGAGGGCC	chr17:73491273-73491536(+)$1	263	109	139	15.4217
UGUGACACAGAUAGAUGCAACGAUCAGGAC	chr2:216292869-216293082(-)$1	213	11	41	14.9719
GCUGAGUGGAAGGUAUGUUGGGUUUUUUUC	chr9:95049971-95050181(-)$1	210	97	127	14.9328
UUUCUGUGAGUGCCGGCUGgggcgcggggg	chr11:68131248-68131479(+)$1	231	158	188	12.5983
UGGUUCACAGGUGAAGGUUGUCAUCCUGGG	chr12:109539606-109539852(+)$1	246	90	120	12.4140
CAUUUUAAGUAAAGGCAAGGUGAUAUUUAA	chr17:12011004-12011236(+)$1	232	36	66	16.4786
GAAAGAUUCUGUGACUCCCCUGAUGGUGUG	chr7:103151307-103151548(-)$1	241	134	164	12.8050
AUUAUGUGAUUGUAGCUUAUUUACAAUGAC	chr4:166405594-166405854(+)$1	260	185	215	11.6991
AGCAAUUUAAUCGCAAUGUUGAGGAUAUUG	chr9:131346014-131346287(+)$1	273	82	112	11.2097
GAUGAUAGUUCGUGUGACAAACAGAGAUAU	chr1:93299063-93299297(+)$1	234	114	144	11.2973
GUGCAUCUGUCUUGUGUCUAUAUGCAGAUG	chr2:216229596-216229804(-)$1	208	69	99	10.8886
UUUAAAUAGGUGGAUCCUUUUCAUACCUUA	chr1:76260166-76260449(+)$1	283	19	49	13.2351
AAAGGACAAUGGCUGGAGUAAGCCUGCCUG	chr6:42980114-42980412(-)$1	298	71	101	13.2653
AGAAACGGGAGAGCCCGGAAGUUCUCCUGA	chr14:102446689-102446929(+)$1	240	105	135	15.9233
GCCUUUGUGAAACACCAGACUGUCCCACAG	chr3:133489253-133489464(+)$1	211	123	153	14.4503
AGCUUAUACCUUUUGUUUUAAAAAAUUGUA	chr6:143823496-143823803(-)$1	307	58	88	11.6645
AAGCAGAUUGAGGUAGGCCCACCUCAUCCC	chr19:7621343-7621555(+)$1	212	100	130	12.7995
CACAUUCUCAUGUGCACACUCGCAUGUUUG	chr15:72499367-72499580(-)$1	213	132	162	13.0362
GGGCGGUGAGGCCUUGCUCCAGGUCUCCCA	chr20:24950783-24951072(-)$1	289	235	265	14.5781
GACCAUGGACUCUGUUCGCUCAGGUCCUUU	chr6:30690603-30690837(+)$1	234	137	167	14.4401
GCUGAGUGGAAGGUAUGUUGGGUUUUUUUC	chr9:95049981-95050222(-)$1	241	138	168	14.9328
CACAUCUGCUUGCAUUUUUUUGCAGGCUUA	chr10:72619028-72619288(+)$1	260	74	104	14.9767
UCUGUCUAUGCCUUCUGUCUAGGGCAUGAG	chr5:140962963-140963244(-)$1	281	40	70	13.5628
UAUUAUGUAAGUGCCUGGUUCCUUACAUAG	chr10:33212445-33212767(-)$1	322	249	279	10.8399
GGCACUGUUAAGGGAUAGCCUCCUUAUCAG	chr6:90428199-90428440(-)$1	241	150	180	13.7286
UGAUGUACGGAGGCAUCUACUGUUUUCUGU	chr17:20924412-20924634(-)$1	222	104	134	11.4041
GUGGGUGGCACAGGAAACAGCCUCUUUUCA	chr3:133482946-133483171(+)$1	225	21	51	16.1255
AAAGGCAAUGCUUGUUUCUUUAAGGUGUGU	chr15:101866542-101866786(-)$1	244	78	108	14.2088
AUCAUCGGGUGGGCGAGACAGCCCCACCCA	chr1:20980084-20980337(-)$1	253	162	192	15.6793
GACAUCAGGGGUCCCCAAGUGGACAUUGAU	chr11:62292823-62293063(-)$1	240	166	196	11.7982
AGACCCAGAAGCCUGUGACAAGGAGACUGG	chr7:107593873-107594111(-)$1	238	12	42	12.7329
AUCGACUACGACCCGCUAGAGGGCUAUGUC	chr11:68153685-68153948(+)$1	263	214	244	12.8425
AGGGAUGUAGAUCUUUCCACAGAAGAUAUU	chr7:103322468-103322681(-)$1	213	48	78	14.3727
CCCAGAACCAGGGCAAGAAGGCCGAGGGGG	chr20:17639650-17639876(-)$1	226	57	87	13.4438
UGAGGUGUUCUGCCGGGAUAGAAAGGUGCU	chr22:25016790-25017073(+)$1	283	89	119	13.1985
AAGAAUUUCAGGAGUUGCUUUUGGAAUAUU	chr19:47423349-47423680(+)$1	331	51	81	12.9378
UUAAGAAAAGAAAACAGuuuuuuuuuuuuu	chr11:9459392-9459622(+)$1	230	183	213	15.2417
UCUGUCAUUAGCUAUUAGUUCUAAUGGAGA	chr14:31380146-31380415(-)$1	269	56	86	10.7755

#DB
(((..(((((((((......))))))))).	chr15:76577876-76578080(-)$1	1	71	101	15.9233
)(((((((((((((......))))))).))	chr16:18573121-18573332(-)$1	1	147	177	13.8180
..(((.(((.((((......)))).))).)	chr11:67046852-67047091(+)$1	1	8	38	14.0879
((.((((((((((.((...)).))))))))	chr15:90335659-90335895(-)$1	1	2	32	11.1208
.(((((((((.(((......)))..)))))	chr14:21484888-21485277(-)$1	1	202	232	15.6522
)((((((((...(((.....)))...))).	chr19:39191209-39191452(+)$1	1	196	226	10.4158
(....(((((.(((......)))..)))))	chr10:13364815-13365031(-)$1	1	138	168	13.9195
.(.((((((((((((.....))))))))))	chr10:15257894-15258122(-)$1	1	49	79	13.3998
.(((.(((((.(((......))).)).)))	chr14:31641060-31641265(-)$1	1	144	174	14.1285
((((((.(((((((......)))))))...	chr1:31744206-31744448(-)$1	1	191	221	14.8361
((((((((((((((......)))))...))	chr17:26723039-26723293(-)$1	1	145	175	15.0993
(.(((.((.(((((......))))).))))	chr8:48689303-48689557(-)$1	1	5	35	12.6927
...(((((((.(((......)))..)))))	chr21:18931191-18931462(+)$1	1	51	81	13.0188
(..(((.(((((((......))))))))))	chr17:73491273-73491536(+)$1	1	109	139	15.4217
((((.(.(.(((.(......).))).)).)	chr2:216292869-216293082(-)$1	1	11	41	14.9719
((((((.(((((.(......).))))))))	chr9:95049971-95050181(-)$1	1	97	127	14.9328
((.((.(..(((((......))))).).))	chr11:68131248-68131479(+)$1	1	158	188	12.5983
))((((.(((((((......))).))))))	chr12:109539606-109539852(+)$1	1	90	120	12.4140
(((((((((((..(......)..)))))))	chr17:12011004-12011236(+)$1	1	36	66	16.4786
(....((.((((.(......).)))).)).	chr7:103151307-103151548(-)$1	1	134	164	12.8050
(..((((.(((((((.....))))))).).	chr4:166405594-166405854(+)$1	1	185	215	11.6991
.((((((((((..(.........)..))))	chr9:131346014-131346287(+)$1	1	82	112	11.2097
(((((((.(((.(((.....)))))).)))	chr1:93299063-93299297(+)$1	1	114	144	11.2973
.(.(((((((..(((....))).)))))))	chr2:216229596-216229804(-)$1	1	69	99	10.8886
((((((((((((((......)).)))).))	chr1:76260166-76260449(+)$1	1	19	49	13.2351
..(((.((..((((......))))))))).	chr6:42980114-42980412(-)$1	1	71	101	13.2653
(((..(((((((((......))))))))).	chr14:102446689-102446929(+)$1	1	105	135	15.9233
...((((((..(((......)))..)))))	chr3:133489253-133489464(+)$1	1	123	153	14.4503
(((.((((..((((......))))..))))	chr6:143823496-143823803(-)$1	1	58	88	11.6645
..((((..((((((......))))))....	chr19:7621343-7621555(+)$1	1	100	130	12.7995
.(((....((((((......))))))..))	chr15:72499367-72499580(-)$1	1	132	162	13.0362
(((.((.(((((((......))))))))).	chr20:24950783-24951072(-)$1	1	235	265	14.5781
..(((.((((.(((......)))))))...	chr6:30690603-30690837(+)$1	1	137	167	14.4401
((((((.(((((.(......).))))))))	chr9:95049981-95050222(-)$1	1	138	168	14.9328
(.(((..(((((((......)))))))..)	chr10:72619028-72619288(+)$1	1	74	104	14.9767
((((.(((((((((......))))))).))	chr5:140962963-140963244(-)$1	1	40	70	13.5628
(((((((((((.((...))..)))))))))	chr10:33212445-33212767(-)$1	1	249	279	10.8399
(((((((.((((((......)))))).)))	chr6:90428199-90428440(-)$1	1	150	180	13.7286
((..(((((((((((.....)).)))))))	chr17:20924412-20924634(-)$1	1	104	134	11.4041
((((((((...(((......)))....)))	chr3:133482946-133483171(+)$1	1	21	51	16.1255
..(.(((...((((......)))).))).)	chr15:101866542-101866786(-)$1	1	78	108	14.2088
))(((.((((((((......).))))))).	chr1:20980084-20980337(-)$1	1	162	192	15.6793
((((((((..((((......)))).)))))	chr11:62292823-62293063(-)$1	1	166	196	11.7982
...(((((...(((......)))...))))	chr7:107593873-107594111(-)$1	1	12	42	12.7329
...(((...(.(((......))))...)))	chr11:68153685-68153948(+)$1	1	214	244	12.8425
..((((((...(((......)))..)))))	chr7:103322468-103322681(-)$1	1	48	78	14.3727
(((....((..(((......)))..)))))	chr20:17639650-17639876(-)$1	1	57	87	13.4438
((((((..(((..(......)..))).)))	chr22:25016790-25017073(+)$1	1	89	119	13.1985
((..((((((((((...)))))))))).))	chr19:47423349-47423680(+)$1	1	51	81	12.9378
..((((((((((((......))))))))))	chr11:9459392-9459622(+)$1	1	183	213	15.2417
(((.(((((((.........))))))))))	chr14:31380146-31380415(-)$1	1	56	86	10.7755

#PSSM
c : 0.13	g : 0.11	= : 0.09	d : 0.07	: : 0.07	! : 0.07	f : 0.07	" : 0.05	i : 0.05	b : 0.03	[ : 0.03	G : 0.01	$ : 0.01	+ : 0.01	# : 0.01	e : 0.01	h : 0.01	% : 0.01	
c : 0.13	= : 0.11	g : 0.11	! : 0.09	f : 0.07	d : 0.07	" : 0.05	i : 0.05	# : 0.05	: : 0.05	a : 0.03	[ : 0.03	e : 0.01	h : 0.01	% : 0.01	
c : 0.19	= : 0.13	f : 0.09	g : 0.09	[ : 0.07	! : 0.07	d : 0.07	i : 0.05	# : 0.03	: : 0.03	e : 0.01	" : 0.01	a : 0.01	h : 0.01	% : 0.01	
c : 0.21	= : 0.17	f : 0.09	g : 0.09	! : 0.07	[ : 0.07	i : 0.05	# : 0.05	d : 0.05	e : 0.03	b : 0.01	h : 0.01	
c : 0.19	= : 0.19	f : 0.09	g : 0.09	i : 0.07	# : 0.07	[ : 0.05	d : 0.05	! : 0.03	e : 0.03	b : 0.03	h : 0.01	
= : 0.19	i : 0.11	[ : 0.11	f : 0.09	c : 0.09	g : 0.09	e : 0.05	d : 0.05	b : 0.05	# : 0.03	a : 0.01	! : 0.01	h : 0.01	
= : 0.15	[ : 0.13	i : 0.11	g : 0.11	c : 0.07	b : 0.07	f : 0.05	! : 0.05	e : 0.03	a : 0.03	d : 0.03	# : 0.03	h : 0.01	" : 0.01	
g : 0.19	= : 0.15	i : 0.11	e : 0.07	[ : 0.07	c : 0.05	b : 0.05	! : 0.05	d : 0.05	f : 0.03	" : 0.03	a : 0.01	# : 0.01	h : 0.01	
g : 0.21	= : 0.15	" : 0.09	i : 0.07	c : 0.07	! : 0.07	d : 0.07	f : 0.07	e : 0.05	b : 0.03	[ : 0.03	
g : 0.21	= : 0.13	e : 0.11	" : 0.09	! : 0.09	i : 0.07	d : 0.07	c : 0.05	f : 0.05	[ : 0.01	b : 0.01	a : 0.01	
g : 0.17	d : 0.15	= : 0.13	[ : 0.11	e : 0.09	" : 0.07	i : 0.05	c : 0.05	! : 0.05	f : 0.05	
c : 0.25	g : 0.15	d : 0.13	e : 0.09	= : 0.07	! : 0.07	i : 0.05	f : 0.05	[ : 0.03	" : 0.01	r : 0.01	
c : 0.29	g : 0.15	d : 0.09	= : 0.07	[ : 0.07	i : 0.05	e : 0.05	! : 0.05	f : 0.05	b : 0.03	r : 0.01	
c : 0.29	a : 0.15	g : 0.13	d : 0.09	= : 0.05	e : 0.05	b : 0.05	f : 0.05	i : 0.03	[ : 0.01	r : 0.01	
o : 0.78	c : 0.05	b : 0.03	r : 0.03	l : 0.03	= : 0.01	g : 0.01	
o : 0.78	n : 0.09	r : 0.03	l : 0.03	b : 0.01	m : 0.01	
o : 0.78	n : 0.09	l : 0.05	r : 0.03	m : 0.01	
o : 0.78	n : 0.09	r : 0.03	l : 0.01	m : 0.01	b : 0.01	= : 0.01	
o : 0.78	n : 0.09	r : 0.03	l : 0.01	m : 0.01	b : 0.01	= : 0.01	
o : 0.78	n : 0.09	r : 0.03	b : 0.01	c : 0.01	2 : 0.01	= : 0.01	
c : 0.29	g : 0.15	a : 0.13	d : 0.09	b : 0.05	= : 0.05	e : 0.05	f : 0.05	i : 0.03	r : 0.01	2 : 0.01	
c : 0.29	g : 0.15	] : 0.11	d : 0.09	= : 0.07	e : 0.05	f : 0.05	i : 0.03	2 : 0.03	b : 0.03	r : 0.01	
c : 0.29	g : 0.17	d : 0.11	= : 0.09	e : 0.09	] : 0.05	f : 0.05	i : 0.03	2 : 0.03	r : 0.01	
g : 0.19	d : 0.15	= : 0.11	2 : 0.11	e : 0.09	i : 0.05	c : 0.05	f : 0.05	3 : 0.03	] : 0.03	a : 0.03	4 : 0.01	
g : 0.19	2 : 0.15	= : 0.11	e : 0.09	d : 0.07	i : 0.05	] : 0.05	3 : 0.05	c : 0.05	f : 0.05	b : 0.03	4 : 0.01	
g : 0.21	= : 0.11	f : 0.09	i : 0.07	c : 0.07	3 : 0.07	d : 0.07	e : 0.05	b : 0.05	] : 0.05	2 : 0.03	4 : 0.01	h : 0.01	
g : 0.21	= : 0.13	] : 0.09	i : 0.07	c : 0.07	e : 0.07	d : 0.07	3 : 0.03	b : 0.03	a : 0.03	f : 0.03	4 : 0.03	2 : 0.01	h : 0.01	
= : 0.15	c : 0.13	] : 0.11	g : 0.11	i : 0.09	f : 0.07	3 : 0.05	b : 0.05	e : 0.03	d : 0.03	2 : 0.03	a : 0.01	4 : 0.01	h : 0.01	
= : 0.17	c : 0.15	i : 0.11	g : 0.11	f : 0.09	b : 0.07	] : 0.05	e : 0.03	3 : 0.03	d : 0.03	a : 0.01	4 : 0.01	2 : 0.01	h : 0.01	
= : 0.17	c : 0.15	g : 0.11	f : 0.09	i : 0.07	] : 0.07	2 : 0.05	e : 0.03	3 : 0.03	b : 0.03	d : 0.03	4 : 0.03	a : 0.01	h : 0.01	

#score	689.0265862187712
#seq	51
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF993NVI_HNRNPK_UTR_m2_run1.txt

#BEAR
ee[bbvvvvvvvvvvvvvbb	chr12:56387830-56388128(+)$1	298	104	124	20.8897
eee[auuuuuuuuuuuua]e	chr5:176923593-176923865(-)$1	272	40	60	22.7428
ggggggtttttttttttggg	chr20:61519311-61519573(-)$1	262	59	79	21.3140
[cccwwwwwwwwwwwwwwcc	chr2:61764606-61764887(-)$1	281	139	159	21.1084
ggggggtttttttttttggg	chr2:61764845-61765110(-)$1	265	159	179	21.3140
cccyyyyyyyyyyyyyyyyc	chr16:28834372-28834605(+)$1	233	46	66	21.0226
fffffuuuuuuuuuuuufff	chr3:183901586-183901861(+)$1	275	94	114	22.0312
cc[bbuuuuuuuuuuuubb]	chr14:24564366-24564639(+)$1	273	164	184	21.8617
ggggggtttttttttttggg	chr17:45608387-45608709(+)$1	322	192	212	21.3140
fddddtttttttttttdddd	chr3:47451501-47451788(+)$1	287	78	98	20.7028
gggggwwwwwwwwwwwwwwg	chr17:42475075-42475337(-)$1	262	20	40	20.7987
gggggyyyyyyyyyyyyyyy	chr19:49605396-49605676(+)$1	280	161	181	21.3378
ddddvvvvvvvvvvvvvddd	chr19:45323459-45323693(+)$1	234	62	82	21.0732
fffffftttttttttttfff	chr7:925174-925435(+)$1	261	116	136	20.8841
eeeeeuuuuuuuuuuuueee	chr20:45242272-45242577(-)$1	305	89	109	22.3980
eeeeeuuuuuuuuuuuueee	chr16:28915599-28915847(+)$1	248	20	40	22.3980
eeeeeuuuuuuuuuuuueee	chr19:49863484-49863776(-)$1	292	39	59	22.3980
fffffyyyyyyyyyyyyyyy	chr4:2831181-2831478(+)$1	297	117	137	21.0472
d!!bbuuuuuuuuuuuubb2	chr16:30759776-30760112(+)$1	336	46	66	21.6292
fffffftttttttttttfff	chr4:47916256-47916551(-)$1	295	184	204	20.8841
fffffftttttttttttfff	chr11:6504775-6505042(+)$1	267	244	264	20.8841
dddccctttttttttttccc	chr7:99951243-99951484(+)$1	241	37	57	21.8131
""cccuuuuuuuuuuuuccc	chr10:102732332-102732674(+)$1	342	255	275	22.9742
ddddvvvvvvvvvvvvvddd	chr19:45323516-45323736(+)$1	220	5	25	21.0732
:ddddtttttttttttdddd	chr12:49332430-49332708(-)$1	278	25	45	19.7643
!!cccyyyyyyyyyyyyyyy	chr7:1028470-1028709(+)$1	239	52	72	21.6432
iiiiivvvvvvvvvvvvvii	chr7:925253-925507(+)$1	254	212	232	21.6356
b[ayyyyyyyyyyyyyyyya	chr11:57585396-57585695(+)$1	299	237	257	20.5660
ggcccuuuuuuuuuuuuccc	chr14:94844258-94844492(-)$1	234	196	216	23.0624
[a[bbwwwwwwwwwwwwwwb	chr17:40994951-40995218(+)$1	267	109	129	20.1622
[eeeeettttttttttteee	chr16:603561-603830(+)$1	269	220	240	21.3868
ddddvvvvvvvvvvvvvddd	chr11:45826869-45827177(+)$1	308	56	76	21.0732
e[cccuuuuuuuuuuuuccc	chr10:103347349-103347647(-)$1	298	14	34	23.0479
eeeeettttttttttteeee	chr20:35090419-35090757(+)$1	338	285	305	20.8974
=====uuuuuuuuuuuu===	chr11:66011655-66011992(+)$1	337	233	253	22.7923
ddddduuuuuuuuuuuuddd	chr11:2160141-2160387(-)$1	246	183	203	22.1594
eeeeeyyyyyyyyyyyyyyy	chr8:30242055-30242362(+)$1	307	237	257	21.2498
:dddduuuuuuuuuuuuddd	chr16:29983111-29983400(+)$1	289	26	46	21.2786
ggggguuuuuuuuuuuuggg	chr4:140638512-140638831(+)$1	319	137	157	22.5454
ggggguuuuuuuuuuuuggg	chr17:36891428-36891687(-)$1	259	26	46	22.5454
''cccuuuuuuuuuuuuccc	chr12:56489913-56490238(+)$1	325	227	247	21.7411
cccwwwwwwwwwwwwwwccc	chrX:30692452-30692779(+)$1	327	49	69	20.4692
[ddddtttttttttttdddd	chr14:21905055-21905358(-)$1	303	237	257	20.8733
fffffyyyyyyyyyyyyyyy	chr20:62694888-62695211(+)$1	323	34	54	21.0472
cccccctttttttttttccc	chr17:36904474-36904741(-)$1	267	184	204	22.0324
eeeeeyyyyyyyyyyyyyyy	chr7:149187597-149187855(-)$1	258	27	47	21.2498
eeeeeuuuuuuuuuuuueee	chr1:53377378-53377681(-)$1	303	118	138	22.3980
cccwwwwwwwwwwwwwwccc	chr7:917480-917730(+)$1	250	101	121	20.4692
!!cccwwwwwwwwwwwwwwc	chr6:31626218-31626501(+)$1	283	129	149	21.1718
ccddddtttttttttttddd	chr3:38454879-38455179(+)$1	300	182	202	21.1361
eeeeewwwwwwwwwwwwwwe	chr2:69472424-69472716(+)$1	292	148	168	20.7004
fffffuuuuuuuuuuuufff	chr4:185309205-185309549(-)$1	344	80	100	22.0312
!!cccuuuuuuuuuuuuccc	chr6:32138357-32138617(-)$1	260	89	109	23.1814
fffffvvvvvvvvvvvvvff	chr2:204308596-204308869(-)$1	273	244	264	21.2234
ff!!bbtttttttttttbb2	chr17:78193384-78193701(-)$1	317	274	294	20.6657
eeeeettttttttttteeee	chr12:31257189-31257464(+)$1	275	67	87	20.8974
eeeeewwwwwwwwwwwwwwe	chr16:28914932-28915246(+)$1	314	178	198	20.7004
[cccwwwwwwwwwwwwwwcc	chr4:667669-667938(-)$1	269	162	182	21.1084
====wwwwwwwwwwwwww==	chr17:40673293-40673584(+)$1	291	164	184	20.8704
cccwwwwwwwwwwwwwwccc	chr6:31626716-31627047(+)$1	331	41	61	20.4692
$ddddtttttttttttdddd	chr19:41829396-41829663(+)$1	267	224	244	20.5621
[cccvvvvvvvvvvvvvccc	chr6:33378591-33378906(+)$1	315	96	116	21.9072
!!cccyyyyyyyyyyyyyyy	chr7:1028326-1028639(+)$1	313	196	216	21.6432
eee[auuuuuuuuuuuua]e	chr5:176923741-176924013(-)$1	272	188	208	22.7428
ddddwwwwwwwwwwwwwwdd	chr1:211433124-211433415(+)$1	291	218	238	20.4163
ddd[awwwwwwwwwwwwwwa	chr9:140348003-140348261(-)$1	258	95	115	20.6670
ddd[bbtttttttttttbb]	chr9:127283965-127284228(-)$1	263	81	101	20.8115
!eeeeettttttttttteee	chr3:47452289-47452551(+)$1	262	220	240	21.3812
eeeeeuuuuuuuuuuuueee	chr16:28915545-28915799(+)$1	254	74	94	22.3980
fffffyyyyyyyyyyyyyyy	chr19:5834306-5834602(-)$1	296	199	219	21.0472
:cccvvvvvvvvvvvvvccc	chr8:37556107-37556409(+)$1	302	89	109	20.7982
hhhccctttttttttttccc	chr1:36806505-36806866(-)$1	361	262	282	21.4604
##cccattttttttttta]c	chrX:152995011-152995288(+)$1	277	153	173	22.2102
ccddddtttttttttttddd	chr3:38454987-38455303(+)$1	316	74	94	21.1361
##ccctttttttttttccc4	chr7:917438-917674(+)$1	236	159	179	21.4462
fffffwwwwwwwwwwwwwwf	chrX:148561391-148561717(-)$1	326	261	281	20.4239
=====uuuuuuuuuuuu===	chr14:24653312-24653604(-)$1	292	253	273	22.7923
#cccbbtttttttttttbb]	chr9:35792061-35792413(+)$1	352	30	50	21.1140

#otherMatches

#Seq PSSM
GGGCAGCCUUAGUUCCCAUG	chr12:56387830-56388128(+)$1	298	104	124	20.8897
CCGCGCCAGUUUAGUCCCUC	chr5:176923593-176923865(-)$1	272	40	60	22.7428
CUUGCUGUUCACACUUAAGC	chr20:61519311-61519573(-)$1	262	59	79	21.3140
CUCGCCCUAAUCCCCCAACG	chr2:61764606-61764887(-)$1	281	139	159	21.1084
CCCAGAUUAAUUCCCCUUUU	chr2:61764845-61765110(-)$1	265	159	179	21.3140
GUCUUCUCUCUCCACCCCCG	chr16:28834372-28834605(+)$1	233	46	66	21.0226
GUGGGUUCCCUUUCCUUCCC	chr3:183901586-183901861(+)$1	275	94	114	22.0312
UGUGCUUGAAAACUGAUGCU	chr14:24564366-24564639(+)$1	273	164	184	21.8617
CCAGCCCCUAGCGCUCCGGC	chr17:45608387-45608709(+)$1	322	192	212	21.3140
AAGUGCCACCCCGCUCCACU	chr3:47451501-47451788(+)$1	287	78	98	20.7028
GCAUGCCAUCCUACAACAUC	chr17:42475075-42475337(-)$1	262	20	40	20.7987
ACCCAUGGCCCUUUCCUUGU	chr19:49605396-49605676(+)$1	280	161	181	21.3378
CUAGCCAUUUcccaacccua	chr19:45323459-45323693(+)$1	234	62	82	21.0732
GGAGCCCCCCAUCCUUUGGC	chr7:925174-925435(+)$1	261	116	136	20.8841
GCAGGCCUCCUUCCCCCUCU	chr20:45242272-45242577(-)$1	305	89	109	22.3980
CAUGUGUCUGUUUAUAAACA	chr16:28915599-28915847(+)$1	248	20	40	22.3980
CUGAGaacacucccauccuc	chr19:49863484-49863776(-)$1	292	39	59	22.3980
GGCCCACUCCUUUACCUCCA	chr4:2831181-2831478(+)$1	297	117	137	21.0472
CUAGACCCCCGUCCCCUUCC	chr16:30759776-30760112(+)$1	336	46	66	21.6292
GCGACCUCCUAAAACCCGGU	chr4:47916256-47916551(-)$1	295	184	204	20.8841
UGUUCUAUCCUAUCUACAGA	chr11:6504775-6505042(+)$1	267	244	264	20.8841
GGGCCCAGGGCCAUGGAGGG	chr7:99951243-99951484(+)$1	241	37	57	21.8131
CUGUGCUUCCCAUUCCCCGC	chr10:102732332-102732674(+)$1	342	255	275	22.9742
CUAGCCAUUUcccaacccua	chr19:45323516-45323736(+)$1	220	5	25	21.0732
UACUGUCACCCUGCCCCAGU	chr12:49332430-49332708(-)$1	278	25	45	19.7643
UCUCCUCCCACCCCACAGCU	chr7:1028470-1028709(+)$1	239	52	72	21.6432
GACACAGAUAGGCCCUUAGU	chr7:925253-925507(+)$1	254	212	232	21.6356
AUCUCUCUUGUCCUCUUCUG	chr11:57585396-57585695(+)$1	299	237	257	20.5660
CUGCCUGAUCGUGCCGUGGC	chr14:94844258-94844492(-)$1	234	196	216	23.0624
UGCUCCCACCCACCCUCCAG	chr17:40994951-40995218(+)$1	267	109	129	20.1622
AGCCCCAACACCCGACGGGG	chr16:603561-603830(+)$1	269	220	240	21.3868
ggcaccucuucccacucugc	chr11:45826869-45827177(+)$1	308	56	76	21.0732
CGUUCCCACUCACCCCCGAA	chr10:103347349-103347647(-)$1	298	14	34	23.0479
CCGAGCACCCCCACUUCUCG	chr20:35090419-35090757(+)$1	338	285	305	20.8974
CCUGACCGUCCGUGUUCUCA	chr11:66011655-66011992(+)$1	337	233	253	22.7923
CGCCUGUCCCCCUCCCGAGG	chr11:2160141-2160387(-)$1	246	183	203	22.1594
cCUGGCUCCCGCCCUCCCUC	chr8:30242055-30242362(+)$1	307	237	257	21.2498
aguccaauaguauaaaagga	chr16:29983111-29983400(+)$1	289	26	46	21.2786
CCUGGGCUUCUCACCCACCA	chr4:140638512-140638831(+)$1	319	137	157	22.5454
CAUGGCUCUCCCAGUUCCCA	chr17:36891428-36891687(-)$1	259	26	46	22.5454
UGCCUAUAAUCCAUUCCAGG	chr12:56489913-56490238(+)$1	325	227	247	21.7411
GGAUCUCCUGCCAACUUUCC	chrX:30692452-30692779(+)$1	327	49	69	20.4692
CCAGAAAUCUUCCGCCUCUG	chr14:21905055-21905358(-)$1	303	237	257	20.8733
UGCCGUUCACUCCCGCAACC	chr20:62694888-62695211(+)$1	323	34	54	21.0472
CUCCCCUCCCGCCGCCCGGG	chr17:36904474-36904741(-)$1	267	184	204	22.0324
cugugcccccccaacccauc	chr7:149187597-149187855(-)$1	258	27	47	21.2498
aggcuccccagaucccaggc	chr1:53377378-53377681(-)$1	303	118	138	22.3980
gcauucccccaccucccugc	chr7:917480-917730(+)$1	250	101	121	20.4692
UCCAGACCCCCUAAUCCACU	chr6:31626218-31626501(+)$1	283	129	149	21.1718
CAGGGccucucuuacuugcc	chr3:38454879-38455179(+)$1	300	182	202	21.1361
agggcaccuccucccucccg	chr2:69472424-69472716(+)$1	292	148	168	20.7004
UGUGAUCUUGCUCUAUCUCA	chr4:185309205-185309549(-)$1	344	80	100	22.0312
CACCCUUUCCUUCACUUGGG	chr6:32138357-32138617(-)$1	260	89	109	23.1814
ugcucaccucagccucccga	chr2:204308596-204308869(-)$1	273	244	264	21.2234
CUGCGAUUCUUUCCCCUUCU	chr17:78193384-78193701(-)$1	317	274	294	20.6657
AGGGGCUUGUCACCUUCCCC	chr12:31257189-31257464(+)$1	275	67	87	20.8974
CGCGCCCCCUCAGCCCCUUG	chr16:28914932-28915246(+)$1	314	178	198	20.7004
UCUGACCAACCUCUUUCGCA	chr4:667669-667938(-)$1	269	162	182	21.1084
AUCUUCCCCGUGCAUUGUAG	chr17:40673293-40673584(+)$1	291	164	184	20.8704
CCCUAUGCUUACAAUUUGGG	chr6:31626716-31627047(+)$1	331	41	61	20.4692
AUGGGUCCUGAGUCAUCCCA	chr19:41829396-41829663(+)$1	267	224	244	20.5621
UGcccgccccccccuccggc	chr6:33378591-33378906(+)$1	315	96	116	21.9072
UCUCCUCCCACCCCACAGCU	chr7:1028326-1028639(+)$1	313	196	216	21.6432
CCGCGCCAGUUUAGUCCCUC	chr5:176923741-176924013(-)$1	272	188	208	22.7428
CGCUUCUUUCCUCCAUCUAG	chr1:211433124-211433415(+)$1	291	218	238	20.4163
GGCCCGCCCACCUUCCCCAG	chr9:140348003-140348261(-)$1	258	95	115	20.6670
CAGCUACCUAGUUUCCUUAC	chr9:127283965-127284228(-)$1	263	81	101	20.8115
UGCUGGCCAGUCCACCCCUA	chr3:47452289-47452551(+)$1	262	220	240	21.3812
CAUGUGUCUGUUUAUAAACA	chr16:28915545-28915799(+)$1	254	74	94	22.3980
AGGCUCAGCAAGUUCCACCA	chr19:5834306-5834602(-)$1	296	199	219	21.0472
AGCUCUUCCUCCACCCCAGc	chr8:37556107-37556409(+)$1	302	89	109	20.7982
GAGGCCUUUCUAGACCUGGC	chr1:36806505-36806866(-)$1	361	262	282	21.4604
CUGUCCUCAACCCAACUGCG	chrX:152995011-152995288(+)$1	277	153	173	22.2102
CAGGGccucucuuacuugcc	chr3:38454987-38455303(+)$1	316	74	94	21.1361
cugccucccuccUCCUGGCC	chr7:917438-917674(+)$1	236	159	179	21.4462
AACAUUGCUAAAGAAUCUUG	chrX:148561391-148561717(-)$1	326	261	281	20.4239
CAGGACCUUACAGCUUCUUC	chr14:24653312-24653604(-)$1	292	253	273	22.7923
UCAGGCUUCUUCACCUCGCA	chr9:35792061-35792413(+)$1	352	30	50	21.1140

#DB
((.((.............))	chr12:56387830-56388128(+)$1	1	104	124	20.8897
(((.(............).)	chr5:176923593-176923865(-)$1	1	40	60	22.7428
((((((...........)))	chr20:61519311-61519573(-)$1	1	59	79	21.3140
.(((..............))	chr2:61764606-61764887(-)$1	1	139	159	21.1084
((((((...........)))	chr2:61764845-61765110(-)$1	1	159	179	21.3140
(((................)	chr16:28834372-28834605(+)$1	1	46	66	21.0226
(((((............)))	chr3:183901586-183901861(+)$1	1	94	114	22.0312
((.((............)).	chr14:24564366-24564639(+)$1	1	164	184	21.8617
((((((...........)))	chr17:45608387-45608709(+)$1	1	192	212	21.3140
(((((...........))))	chr3:47451501-47451788(+)$1	1	78	98	20.7028
(((((..............)	chr17:42475075-42475337(-)$1	1	20	40	20.7987
(((((...............	chr19:49605396-49605676(+)$1	1	161	181	21.3378
((((.............)))	chr19:45323459-45323693(+)$1	1	62	82	21.0732
((((((...........)))	chr7:925174-925435(+)$1	1	116	136	20.8841
(((((............)))	chr20:45242272-45242577(-)$1	1	89	109	22.3980
(((((............)))	chr16:28915599-28915847(+)$1	1	20	40	22.3980
(((((............)))	chr19:49863484-49863776(-)$1	1	39	59	22.3980
(((((...............	chr4:2831181-2831478(+)$1	1	117	137	21.0472
(..((............)).	chr16:30759776-30760112(+)$1	1	46	66	21.6292
((((((...........)))	chr4:47916256-47916551(-)$1	1	184	204	20.8841
((((((...........)))	chr11:6504775-6505042(+)$1	1	244	264	20.8841
((((((...........)))	chr7:99951243-99951484(+)$1	1	37	57	21.8131
..(((............)))	chr10:102732332-102732674(+)$1	1	255	275	22.9742
((((.............)))	chr19:45323516-45323736(+)$1	1	5	25	21.0732
.((((...........))))	chr12:49332430-49332708(-)$1	1	25	45	19.7643
..(((...............	chr7:1028470-1028709(+)$1	1	52	72	21.6432
(((((.............))	chr7:925253-925507(+)$1	1	212	232	21.6356
(.(................)	chr11:57585396-57585695(+)$1	1	237	257	20.5660
(((((............)))	chr14:94844258-94844492(-)$1	1	196	216	23.0624
.(.((..............)	chr17:40994951-40995218(+)$1	1	109	129	20.1622
.(((((...........)))	chr16:603561-603830(+)$1	1	220	240	21.3868
((((.............)))	chr11:45826869-45827177(+)$1	1	56	76	21.0732
(.(((............)))	chr10:103347349-103347647(-)$1	1	14	34	23.0479
(((((...........))))	chr20:35090419-35090757(+)$1	1	285	305	20.8974
(((((............)))	chr11:66011655-66011992(+)$1	1	233	253	22.7923
)((((............)))	chr11:2160141-2160387(-)$1	1	183	203	22.1594
(((((...............	chr8:30242055-30242362(+)$1	1	237	257	21.2498
.((((............)))	chr16:29983111-29983400(+)$1	1	26	46	21.2786
(((((............)))	chr4:140638512-140638831(+)$1	1	137	157	22.5454
(((((............)))	chr17:36891428-36891687(-)$1	1	26	46	22.5454
..(((............)))	chr12:56489913-56490238(+)$1	1	227	247	21.7411
(((..............)))	chrX:30692452-30692779(+)$1	1	49	69	20.4692
.((((...........))))	chr14:21905055-21905358(-)$1	1	237	257	20.8733
(((((...............	chr20:62694888-62695211(+)$1	1	34	54	21.0472
((((((...........)))	chr17:36904474-36904741(-)$1	1	184	204	22.0324
(((((...............	chr7:149187597-149187855(-)$1	1	27	47	21.2498
(((((............)))	chr1:53377378-53377681(-)$1	1	118	138	22.3980
(((..............)))	chr7:917480-917730(+)$1	1	101	121	20.4692
..(((..............)	chr6:31626218-31626501(+)$1	1	129	149	21.1718
((((((...........)))	chr3:38454879-38455179(+)$1	1	182	202	21.1361
(((((..............)	chr2:69472424-69472716(+)$1	1	148	168	20.7004
(((((............)))	chr4:185309205-185309549(-)$1	1	80	100	22.0312
..(((............)))	chr6:32138357-32138617(-)$1	1	89	109	23.1814
(((((.............))	chr2:204308596-204308869(-)$1	1	244	264	21.2234
((..((...........)).	chr17:78193384-78193701(-)$1	1	274	294	20.6657
(((((...........))))	chr12:31257189-31257464(+)$1	1	67	87	20.8974
(((((..............)	chr16:28914932-28915246(+)$1	1	178	198	20.7004
.(((..............))	chr4:667669-667938(-)$1	1	162	182	21.1084
((((..............))	chr17:40673293-40673584(+)$1	1	164	184	20.8704
(((..............)))	chr6:31626716-31627047(+)$1	1	41	61	20.4692
.((((...........))))	chr19:41829396-41829663(+)$1	1	224	244	20.5621
.(((.............)))	chr6:33378591-33378906(+)$1	1	96	116	21.9072
..(((...............	chr7:1028326-1028639(+)$1	1	196	216	21.6432
(((.(............).)	chr5:176923741-176924013(-)$1	1	188	208	22.7428
((((..............))	chr1:211433124-211433415(+)$1	1	218	238	20.4163
(((.(..............)	chr9:140348003-140348261(-)$1	1	95	115	20.6670
(((.((...........)).	chr9:127283965-127284228(-)$1	1	81	101	20.8115
.(((((...........)))	chr3:47452289-47452551(+)$1	1	220	240	21.3812
(((((............)))	chr16:28915545-28915799(+)$1	1	74	94	22.3980
(((((...............	chr19:5834306-5834602(-)$1	1	199	219	21.0472
.(((.............)))	chr8:37556107-37556409(+)$1	1	89	109	20.7982
((((((...........)))	chr1:36806505-36806866(-)$1	1	262	282	21.4604
..((((...........).)	chrX:152995011-152995288(+)$1	1	153	173	22.2102
((((((...........)))	chr3:38454987-38455303(+)$1	1	74	94	21.1361
..(((...........))).	chr7:917438-917674(+)$1	1	159	179	21.4462
(((((..............)	chrX:148561391-148561717(-)$1	1	261	281	20.4239
(((((............)))	chr14:24653312-24653604(-)$1	1	253	273	22.7923
.(((((...........)).	chr9:35792061-35792413(+)$1	1	30	50	21.1140

#PSSM
e : 0.19	f : 0.15	d : 0.11	g : 0.10	c : 0.10	[ : 0.07	! : 0.06	: : 0.03	= : 0.03	# : 0.03	" : 0.01	i : 0.01	b : 0.01	' : 0.01	$ : 0.01	h : 0.01	
e : 0.20	c : 0.16	d : 0.16	f : 0.14	g : 0.10	! : 0.06	= : 0.03	[ : 0.02	# : 0.02	" : 0.01	i : 0.01	a : 0.01	' : 0.01	h : 0.01	
c : 0.25	e : 0.19	d : 0.19	f : 0.12	g : 0.08	[ : 0.03	= : 0.03	! : 0.02	i : 0.01	a : 0.01	h : 0.01	
c : 0.23	e : 0.16	d : 0.15	f : 0.12	g : 0.08	b : 0.05	[ : 0.05	= : 0.03	w : 0.03	y : 0.02	i : 0.01	! : 0.01	
e : 0.16	c : 0.16	f : 0.12	d : 0.10	b : 0.08	g : 0.08	w : 0.08	v : 0.06	a : 0.03	y : 0.02	= : 0.02	i : 0.01	
u : 0.28	w : 0.17	y : 0.12	v : 0.10	t : 0.08	g : 0.03	f : 0.03	c : 0.03	b : 0.03	e : 0.02	d : 0.02	a : 0.01	
t : 0.30	u : 0.28	w : 0.17	y : 0.12	v : 0.10	
t : 0.30	u : 0.28	w : 0.17	y : 0.12	v : 0.10	
t : 0.30	u : 0.28	w : 0.17	y : 0.12	v : 0.10	
t : 0.30	u : 0.28	w : 0.17	y : 0.12	v : 0.10	
t : 0.30	u : 0.28	w : 0.17	y : 0.12	v : 0.10	
t : 0.30	u : 0.28	w : 0.17	y : 0.12	v : 0.10	
t : 0.30	u : 0.28	w : 0.17	y : 0.12	v : 0.10	
t : 0.30	u : 0.28	w : 0.17	y : 0.12	v : 0.10	
t : 0.30	u : 0.28	w : 0.17	y : 0.12	v : 0.10	
t : 0.30	u : 0.28	w : 0.17	y : 0.12	v : 0.10	
u : 0.28	t : 0.21	w : 0.17	y : 0.12	v : 0.10	d : 0.05	e : 0.02	c : 0.01	
c : 0.17	w : 0.14	d : 0.14	y : 0.12	e : 0.11	g : 0.06	f : 0.06	b : 0.06	v : 0.03	a : 0.03	= : 0.02	
c : 0.20	d : 0.15	y : 0.12	e : 0.11	w : 0.08	b : 0.07	f : 0.07	g : 0.06	] : 0.03	= : 0.03	i : 0.01	
c : 0.23	e : 0.16	d : 0.15	y : 0.10	f : 0.08	g : 0.07	] : 0.03	= : 0.03	b : 0.02	2 : 0.02	a : 0.02	i : 0.01	4 : 0.01	

#score	1671.1013166455878
#seq	78
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF937QJB_EXOSC5_CDS_m2_run2.txt

#BEAR
ee[annnnna]ee	chr9:116999159-116999368(+)$1	209	3	16	10.1213
ddddnnnnndddd	chr9:117053000-117053254(+)$1	254	195	208	12.0202
ddddnnnnndddd	chr9:117063250-117063506(+)$1	256	91	104	12.0202
ddddnnnnndddd	chr21:46908232-46908457(+)$1	225	32	45	12.0202
ddddnnnnndddd	chr2:242757627-242757937(+)$1	310	170	183	12.0202
ddddnnnnndddd	chr21:46281504-46281835(-)$1	331	146	159	12.0202
ccccnnnnnccc]	chr10:1094606-1094927(-)$1	321	9	22	9.6117
dd[annnnnaddd	chr2:220435293-220435530(-)$1	237	190	203	11.5306
ddddnnnnndddd	chr9:117053054-117053295(+)$1	241	141	154	12.0202
eeeennnnneeee	chr14:39736575-39736846(+)$1	271	161	174	9.9684
ddddnnnnndddd	chr9:116967286-116967515(+)$1	229	63	76	12.0202
[cccnnnnnccc]	chr8:13133750-13134023(-)$1	273	143	156	9.5317
ddddnnnnndddd	chr21:46910142-46910358(+)$1	216	116	129	12.0202
eeeennnnneeee	chr9:117002615-117002857(+)$1	242	95	108	9.9684
dd[annnnna]dd	chr14:34931151-34931420(-)$1	269	153	166	11.2000

#otherMatches

#Seq PSSM
GCGUUCUCUGGGC	chr9:116999159-116999368(+)$1	209	3	16	10.1213
AGGUCAGAUACCU	chr9:117053000-117053254(+)$1	254	195	208	12.0202
UCUCCUUUAGGGA	chr9:117063250-117063506(+)$1	256	91	104	12.0202
UGCGGCAGACGCA	chr21:46908232-46908457(+)$1	225	32	45	12.0202
UGACAGUUGGUCA	chr2:242757627-242757937(+)$1	310	170	183	12.0202
CCCGGCGUGUGGG	chr21:46281504-46281835(-)$1	331	146	159	12.0202
GAGCGAUUGGCUg	chr10:1094606-1094927(-)$1	321	9	22	9.6117
CGUCUACGUGUGC	chr2:220435293-220435530(-)$1	237	190	203	11.5306
AGGUCAGAUACCU	chr9:117053054-117053295(+)$1	241	141	154	12.0202
GCGCGAUGAGUGU	chr14:39736575-39736846(+)$1	271	161	174	9.9684
CUGCCUGAUGCAG	chr9:116967286-116967515(+)$1	229	63	76	12.0202
GCGCCCCCUGCGA	chr8:13133750-13134023(-)$1	273	143	156	9.5317
AGGUGAGUUGCCU	chr21:46910142-46910358(+)$1	216	116	129	12.0202
CAGGGUAAGCCUG	chr9:117002615-117002857(+)$1	242	95	108	9.9684
cugggggcgcggg	chr14:34931151-34931420(-)$1	269	153	166	11.2000

#DB
((.(.....).))	chr9:116999159-116999368(+)$1	1	3	16	10.1213
((((.....))))	chr9:117053000-117053254(+)$1	1	195	208	12.0202
((((.....))))	chr9:117063250-117063506(+)$1	1	91	104	12.0202
((((.....))))	chr21:46908232-46908457(+)$1	1	32	45	12.0202
((((.....))))	chr2:242757627-242757937(+)$1	1	170	183	12.0202
((((.....))))	chr21:46281504-46281835(-)$1	1	146	159	12.0202
((((.....))).	chr10:1094606-1094927(-)$1	1	9	22	9.6117
((.(.....))))	chr2:220435293-220435530(-)$1	1	190	203	11.5306
((((.....))))	chr9:117053054-117053295(+)$1	1	141	154	12.0202
((((.....))))	chr14:39736575-39736846(+)$1	1	161	174	9.9684
((((.....))))	chr9:116967286-116967515(+)$1	1	63	76	12.0202
.(((.....))).	chr8:13133750-13134023(-)$1	1	143	156	9.5317
((((.....))))	chr21:46910142-46910358(+)$1	1	116	129	12.0202
((((.....))))	chr9:117002615-117002857(+)$1	1	95	108	9.9684
((.(.....).))	chr14:34931151-34931420(-)$1	1	153	166	11.2000

#PSSM
d : 0.66	e : 0.20	c : 0.06	[ : 0.06	
d : 0.66	e : 0.20	c : 0.13	
d : 0.53	[ : 0.20	c : 0.13	e : 0.13	
d : 0.53	a : 0.20	c : 0.13	e : 0.13	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
n : 0.99	
d : 0.53	a : 0.20	c : 0.13	e : 0.13	
d : 0.60	] : 0.13	c : 0.13	e : 0.13	
d : 0.66	e : 0.20	c : 0.13	
d : 0.66	e : 0.20	] : 0.13	

#score	168.09435073535997
#seq	15
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF741FRL_FAM120A_UTR_m1_run1.txt

#BEAR
####ggggggg[a"""bbnnnnnbb333a]ggggggghhh	chr5:140895482-140895797(-)$1	315	55	95	18.1343
bb[bb[ccc!!bb!!cccooooooccc333bb4444ccc2	chr2:20648034-20648284(+)$1	250	68	108	16.0249
ffccc"""ccc!!eeeeeooooooeeeee4444ccc4444	chr11:2154676-2154880(-)$1	204	147	187	14.8201
cc[ggggggg####cccooooooccc22ggggggg]ccc:	chr4:159046754-159047013(-)$1	259	134	174	16.1251
:===========a[ddddnnnnndddd]a333========	chr7:37990379-37990604(+)$1	225	1	41	17.7277
"""dddd"""dddd!!bboooooobb22dddd333ddddh	chr2:241568619-241568929(+)$1	310	213	253	13.9318
=======[==========nnnnn==========]======	chr13:113976889-113977127(+)$1	238	183	223	20.2360
==[bb!!ccc$$$$$ddddllldddd4444ccc]bb====	chr1:2004869-2005114(+)$1	245	63	103	14.5611
[ccc!!ccc"""a[ddddnnnnnddddaccc]ccc]dddd	chr1:230838553-230838799(-)$1	246	43	83	14.8223
b[dddd[ccc[a[eeeeeooooooeeeee]acccdddd]b	chr17:79825594-79825823(+)$1	229	186	226	12.5975
[eeeee[ccc[gggggggnnnnnggggggg22ccc]eeee	chr2:220252620-220252899(-)$1	279	13	53	13.5966
biiiiiiiii!!eeeeebbmmmmbb4444eeeeeiiiiii	chr19:11032865-11033116(+)$1	251	120	160	14.6786
b"""ccc[a[ccc####ccclllccc4444ccc]a]ccc3	chr6:31125709-31126015(-)$1	306	5	45	15.9728
!!ggggggg[eeeee[bboooooobb333eeeeegggggg	chr7:27153317-27153564(-)$1	247	117	157	15.5969
iiiiiii[dddd!!cccooooooccc333ddddiiiiiii	chr17:41622773-41623044(+)$1	271	26	66	17.0570
ccceeeee[iiiiiiiiinnnnniiiiiiiiieeeee888	chr6:75963881-75964147(-)$1	266	34	74	13.5863
ccc####ggggggg[cccnnnnnccc333gggggggccc]	chr1:225684091-225684346(-)$1	255	165	205	17.9496
c[a[ccc"""ccc"""ccclllccc333ccc333ccc]a]	chr3:128840659-128840926(-)$1	267	122	162	16.8432
e!!ccc####bb[a[cccnnnnnccca]bb4444ccc333	chr3:195621437-195621692(-)$1	255	51	91	16.5363
ffccc"""ccc!!eeeeeooooooeeeee4444ccc4444	chr11:2154657-2154862(-)$1	205	129	169	14.8201
a[==========ccc[aooooooa]ccc]==========]	chr16:1748971-1749268(+)$1	297	84	124	18.4271
:===============oooooo===============:::	chr12:46753750-46754000(-)$1	250	1	41	14.3463
ggggg[ccc==========mmmm==========>>>>>>>	chr3:49571194-49571459(+)$1	265	37	77	14.2519
bb[bb!!ccc[ccc!!cccmmmmccc333ccc22ccc22b	chr3:52567648-52567901(-)$1	253	49	89	14.5305
=====dddd!!bb!!cccnnnnnccc22bbdddd333===	chr1:236140644-236140883(-)$1	239	180	220	16.1675
c[eeeee####gggggggnnnnngggggggeeeee]ccc]	chr11:126146201-126146444(+)$1	243	53	93	14.4067
[ggggggg!!dddd!!bbnnnnnbb]dddd]ggggggg]a	chr8:21862699-21863018(+)$1	319	11	51	15.0587
:a[===========!!bbnnnnnbb22===========]a	chr17:76794081-76794371(-)$1	290	180	220	18.9114
cc[==========eeeeellleeeee333==========3	chr10:120444024-120444312(-)$1	288	200	240	17.4072
=======ccc####ddddnnnnndddd4444ccc]=====	chr17:72206580-72206839(+)$1	259	77	117	18.0631
i"""a!!dddd!!ddddoooooodddd22dddd22a]iii	chr17:56167724-56167970(+)$1	246	153	193	14.2638
[iiiiiiiii!!bbccc[ammmmaccc]bb]iiiiiiiii	chr20:43955389-43955648(-)$1	259	214	254	15.5442
eeeee!!bbiiiiiiiiinnnnniiiiiiiii333bb22e	chr9:136228401-136228621(-)$1	220	45	85	15.2216
dddd[ccc!!a!!bb[bboooooobb]bb22a22ccc]dd	chr16:30535514-30535770(-)$1	256	201	241	13.3193
###ccc!!a####eeeeennnnneeeee333a22ccc444	chr7:2147080-2147370(-)$1	290	183	223	16.6378
bbccc"""bb[a[eeeeeooooooeeeeea]bb333ccc]	chr17:7477025-7477297(+)$1	272	62	102	13.9429
ddd####ggggggg"""bbmmmmbb333ggggggg4444d	chr6:7289397-7289625(-)$1	228	105	145	14.1552
####ggggggg[a"""bbnnnnnbb333a]ggggggghhh	chr5:140895630-140895872(-)$1	242	130	170	18.1343
[ccc[==========!!bbmmmmbb22==========]cc	chr2:102508215-102508461(+)$1	246	131	171	16.4919
=======bb[cccbb[bboooooobb]bb]ccc]bb]===	chr16:640025-640309(+)$1	284	97	137	14.8018
cc[iiiiiiiii"""cccnnnnnccc333iiiiiiiii]c	chr7:127231552-127231826(+)$1	274	19	59	20.2618
###eeeee####bb[cccnnnnncccbb333eeeeehhhh	chr11:47488504-47488803(-)$1	299	254	294	14.5700
============fffffflllffffffccc"""=======	chr9:136228922-136229151(-)$1	229	71	111	13.5880
===="""dddd####cccnnnnnccc333dddd333====	chr8:28748176-28748442(+)$1	266	73	113	18.7278
"==========####cccmmmmccc4444==========0	chr19:42751649-42751902(-)$1	253	147	187	18.3665
iiiiiiii$$$$$ddddoooooodddd4444iiiiiiiii	chr11:62392546-62392760(-)$1	214	18	58	16.4914
ccc[===============lll===============]cc	chr4:763944-764207(-)$1	263	171	211	18.1827
hhhhh[bb===========lll===========22bbhhh	chr3:49045329-49045643(+)$1	314	68	108	14.3213
####ggggggg[a"""bbnnnnnbb333a]ggggggghhh	chr5:140895672-140895905(-)$1	233	163	203	18.1343
fff=========="""cccmmmmccc333==========>	chr4:177253111-177253395(+)$1	284	112	152	18.3087

#otherMatches

#Seq PSSM
CGACAGUGUGGGACCUGCCCCCAGCUUCUGCCACGCUUUA	chr5:140895482-140895797(-)$1	315	55	95	18.1343
GGCUGUGUGUCUGUUCGACUCCCCUCGCCCCAUUUUCACC	chr2:20648034-20648284(+)$1	250	68	108	16.0249
GCCCCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUC	chr11:2154676-2154880(-)$1	204	147	187	14.8201
GACAGUUGAGCUUUGGAUUAUCUUCCUCUUCAAUUUUCCC	chr4:159046754-159047013(-)$1	259	134	174	16.1251
gugauaauaaaaagcagagugauuuuggucaauuuuauua	chr7:37990379-37990604(+)$1	225	1	41	17.7277
GAAGGGCUGAUGCAGGUGUGGAGUCAAAUGUGGGUGCCUC	chr2:241568619-241568929(+)$1	310	213	253	13.9318
CUCUCUCUGAGGGGGUGGGGGUGCCGCUUUCUCUGAGGGG	chr13:113976889-113977127(+)$1	238	183	223	20.2360
GCUGGGUUCUGUUCUGAUGUCGCAUUUUCAAGGUCCGCUG	chr1:2004869-2005114(+)$1	245	63	103	14.5611
UGAGUCGACUUUGAGCUGGAAAGCAGCCGUUUCUCCUUGG	chr1:230838553-230838799(-)$1	246	43	83	14.8223
GGUGGCACUGAGAGCCUGGGGGAACAGGCGCCAGGCCAGU	chr17:79825594-79825823(+)$1	229	186	226	12.5975
cgggcggugcagcccugcgaggggcagggcgggCGGUGCU	chr2:220252620-220252899(-)$1	279	13	53	13.5966
CGGGGAGGGGUGGCCCCGCCGAGGCUUCAGGGGCCCCCUC	chr19:11032865-11033116(+)$1	251	120	160	14.6786
CAGAGGCGGGGCCGGGAGCGAGGCGUAGGGGGUGUGGCCA	chr6:31125709-31126015(-)$1	306	5	45	15.9728
GAGCCGUGCUGGAGCAGCGAGGCGGCCACGCUCUGCGCGG	chr7:27153317-27153564(-)$1	247	117	157	15.5969
GGGUCCUCGGGUGACUCAGGGGCGGGGCAGCCCAGGACUC	chr17:41622773-41623044(+)$1	271	26	66	17.0570
UGUCAGUCCUUCAGAAUAUUAUUUAUUCUGAAGAUUGUCC	chr6:75963881-75964147(-)$1	266	34	74	13.5863
UUGAAUUUUGUUAUGUUGAAAUGCAAGAAAUAACAAUGAU	chr1:225684091-225684346(-)$1	255	165	205	17.9496
cgaggucggagcugagggcggagucgggggcggggacgua	chr3:128840659-128840926(-)$1	267	122	162	16.8432
CAGGAGAAAGGGGGACUCGGUAGGAGCGUUGGGGCUUAAG	chr3:195621437-195621692(-)$1	255	51	91	16.5363
GCCCCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUC	chr11:2154657-2154862(-)$1	205	129	169	14.8201
UGUUUUCAUUUCCUUUUGCCCAAAUGAGCGGGGUGGGAAG	chr16:1748971-1749268(+)$1	297	84	124	18.4271
AGUGCAAUUGGGUAAAACAGGGUUUAUUCAGUUGCAUCUG	chr12:46753750-46754000(-)$1	250	1	41	14.3463
CCAAGGGACAGUAUUUUUUAUCAAAGGAAUACUAUUUUUU	chr3:49571194-49571459(+)$1	265	37	77	14.2519
GCACGAGGCCACCGUggcgggcgcgcagucggagggcggc	chr3:52567648-52567901(-)$1	253	49	89	14.5305
AAAUUAGCAUUCCUUAAUGUUUUGUUUUGGUGCUCUGAAU	chr1:236140644-236140883(-)$1	239	180	220	16.1675
UUUCUGCAGUUCGUAACCGCACUGGUUGUGGCAGGUAUGU	chr11:126146201-126146444(+)$1	243	53	93	14.4067
GUGGGGAAAAUGGCAAAGGUCAACUAGCUGCUUCCCCAGG	chr8:21862699-21863018(+)$1	319	11	51	15.0587
GUGGCAUGUGUUCUGGUCACUUGGAGAAGGGCAUGUGUGG	chr17:76794081-76794371(-)$1	290	180	220	18.9114
ACAGAGAAGUAAAGAUAAAGGUUGUCAGAUUUAUUUUUUA	chr10:120444024-120444312(-)$1	288	200	240	17.4072
cucuuucauuggcuugcugucaggguacugggauGGGGGG	chr17:72206580-72206839(+)$1	259	77	117	18.0631
CUCUGGAGCUGGGUCUCAGUGCAGAGGGACAGUGACUGUG	chr17:56167724-56167970(+)$1	246	153	193	14.2638
UGUUUCUGUAAAUGGGUACUUGUGAUCACACUACGGGAAU	chr20:43955389-43955648(-)$1	259	214	254	15.5442
UCCUGUUUCUCCUGGCCCUGGGUGGGCUAGGGCCUGAUUC	chr9:136228401-136228621(-)$1	220	45	85	15.2216
CCUGGCUUGGCAACUGCUAGAGCAGGGAGGGGGGAGGGCA	chr16:30535514-30535770(-)$1	256	201	241	13.3193
UCACAGCAUGAUUGCAGCGGGCAGCUGUUGAAGACUGGAA	chr7:2147080-2147370(-)$1	290	183	223	16.6378
CAUCCGGGCAACGCGAGGGGGGGGCUUCGGCUGGAGGGAG	chr17:7477025-7477297(+)$1	272	62	102	13.9429
AGAAAACUUCCCAGUGGCUUCAAGGAAUUUGGGGAUCUCU	chr6:7289397-7289625(-)$1	228	105	145	14.1552
CGACAGUGUGGGACCUGCCCCCAGCUUCUGCCACGCUUUA	chr5:140895630-140895872(-)$1	242	130	170	18.1343
AGGGGUCCCAUUUUGUUUCUUUGGAUUUGGGGUGGGGGUC	chr2:102508215-102508461(+)$1	246	131	171	16.4919
cgcccgggcgcgggcggggcggggccggcgcugggcuucg	chr16:640025-640309(+)$1	284	97	137	14.8018
CUAUGGAAGGGGCUUCCUGGCCAAGGCCCCCUCUUCCAGA	chr7:127231552-127231826(+)$1	274	19	59	20.2618
UUAUGCCCAAGGCCGCUCUGCCUGGGGGAAAGGGCAGCCA	chr11:47488504-47488803(-)$1	299	254	294	14.5700
AGCCUGUCUCCAGGGCUGCUGCGGCCCAGCCCCGAGCCUG	chr9:136228922-136229151(-)$1	229	71	111	13.5880
UCUCUUCACUUAAAACAAUUUUUUUGGAGGGGUUUUGGGG	chr8:28748176-28748442(+)$1	266	73	113	18.7278
AUGUAUUCAAAACAAUAAAACUUUGGACCUUUGGAUGCAG	chr19:42751649-42751902(-)$1	253	147	187	18.3665
GAGUGAGGUUGCUAAAGAACAUCCUUUUCCCUCUCAUUCU	chr11:62392546-62392760(-)$1	214	18	58	16.4914
CUGAGCGUACACAUAUGUAGCAUGCAUGUGUGUGUGUGCG	chr4:763944-764207(-)$1	263	171	211	18.1827
CCCCGGCCCCUCAGGGGGUGUGGCCUCUUGGGGAAGGCGG	chr3:49045329-49045643(+)$1	314	68	108	14.3213
CGACAGUGUGGGACCUGCCCCCAGCUUCUGCCACGCUUUA	chr5:140895672-140895905(-)$1	233	163	203	18.1343
GGAUGGGGGAGGUUAGUUACACUUAAAAUAUCUUCUCCAG	chr4:177253111-177253395(+)$1	284	112	152	18.3087

#DB
....(((((((.(...((.....))...).))))))))))	chr5:140895482-140895797(-)$1	1	55	95	18.1343
((.((.(((..((..(((......)))...))....))).	chr2:20648034-20648284(+)$1	1	68	108	16.0249
(((((...(((..(((((......)))))....)))....	chr11:2154676-2154880(-)$1	1	147	187	14.8201
((.(((((((....(((......)))..))))))).))).	chr4:159046754-159047013(-)$1	1	134	174	16.1251
.((((((((((((.((((.....)))).)...))))))))	chr7:37990379-37990604(+)$1	1	1	41	17.7277
...((((...((((..((......))..))))...)))))	chr2:241568619-241568929(+)$1	1	213	253	13.9318
(((((((.((((((((((.....)))))))))).))))))	chr13:113976889-113977127(+)$1	1	183	223	20.2360
((.((..(((.....((((...))))....))).))))))	chr1:2004869-2005114(+)$1	1	63	103	14.5611
.(((..(((...(.((((.....)))))))).))).))))	chr1:230838553-230838799(-)$1	1	43	83	14.8223
(.((((.(((.(.(((((......))))).)))))))).)	chr17:79825594-79825823(+)$1	1	186	226	12.5975
.(((((.(((.(((((((.....)))))))..))).))))	chr2:220252620-220252899(-)$1	1	13	53	13.5966
)(((((((((..(((((((....))....)))))))))))	chr19:11032865-11033116(+)$1	1	120	160	14.6786
(...(((.(.(((....(((...)))....))).).))).	chr6:31125709-31126015(-)$1	1	5	45	15.9728
..(((((((.(((((.((......))...)))))))))))	chr7:27153317-27153564(-)$1	1	117	157	15.5969
(((((((.((((..(((......)))...)))))))))))	chr17:41622773-41623044(+)$1	1	26	66	17.0570
((((((((.(((((((((.....))))))))))))))...	chr6:75963881-75964147(-)$1	1	34	74	13.5863
(((....(((((((.(((.....)))...)))))))))).	chr1:225684091-225684346(-)$1	1	165	205	17.9496
(.(.(((...(((...(((...)))...)))...))).).	chr3:128840659-128840926(-)$1	1	122	162	16.8432
(..(((....((.(.(((.....)))).))....)))...	chr3:195621437-195621692(-)$1	1	51	91	16.5363
(((((...(((..(((((......)))))....)))....	chr11:2154657-2154862(-)$1	1	129	169	14.8201
(.(((((((((((((.(......).))).)))))))))).	chr16:1748971-1749268(+)$1	1	84	124	18.4271
.(((((((((((((((......)))))))))))))))...	chr12:46753750-46754000(-)$1	1	1	41	14.3463
(((((.(((((((((((((....)))))))))).......	chr3:49571194-49571459(+)$1	1	37	77	14.2519
((.((..(((.(((..(((....)))...)))..)))..)	chr3:52567648-52567901(-)$1	1	49	89	14.5305
(((((((((..((..(((.....)))..))))))...)))	chr1:236140644-236140883(-)$1	1	180	220	16.1675
(.(((((....(((((((.....)))))))))))).))).	chr11:126146201-126146444(+)$1	1	53	93	14.4067
.(((((((..((((..((.....)).)))).))))))).)	chr8:21862699-21863018(+)$1	1	11	51	15.0587
.(.(((((((((((..((.....))..))))))))))).)	chr17:76794081-76794371(-)$1	1	180	220	18.9114
((.(((((((((((((((...)))))...)))))))))).	chr10:120444024-120444312(-)$1	1	200	240	17.4072
((((((((((....((((.....))))....))).)))))	chr17:72206580-72206839(+)$1	1	77	117	18.0631
(...(..((((..((((......))))..))))..).)))	chr17:56167724-56167970(+)$1	1	153	193	14.2638
.(((((((((..(((((.(....)))).)).)))))))))	chr20:43955389-43955648(-)$1	1	214	254	15.5442
(((((..(((((((((((.....)))))))))...))..)	chr9:136228401-136228621(-)$1	1	45	85	15.2216
((((.(((..(..((.((......)).))..)..))).))	chr16:30535514-30535770(-)$1	1	201	241	13.3193
...(((..(....(((((.....)))))...)..)))...	chr7:2147080-2147370(-)$1	1	183	223	16.6378
(((((...((.(.(((((......)))))).))...))).	chr17:7477025-7477297(+)$1	1	62	102	13.9429
(((....(((((((...((....))...)))))))....)	chr6:7289397-7289625(-)$1	1	105	145	14.1552
....(((((((.(...((.....))...).))))))))))	chr5:140895630-140895872(-)$1	1	130	170	18.1343
.(((.((((((((((..((....))..)))))))))).))	chr2:102508215-102508461(+)$1	1	131	171	16.4919
(((((((((.(((((.((......)).)).))).)).)))	chr16:640025-640309(+)$1	1	97	137	14.8018
((.(((((((((...(((.....)))...))))))))).)	chr7:127231552-127231826(+)$1	1	19	59	20.2618
...(((((....((.(((.....)))))...)))))))))	chr11:47488504-47488803(-)$1	1	254	294	14.5700
))))))))))))((((((...))))))(((...(((((((	chr9:136228922-136229151(-)$1	1	71	111	13.5880
((((...((((....(((.....)))...))))...))))	chr8:28748176-28748442(+)$1	1	73	113	18.7278
.((((((((((....(((....)))....)))))))))).	chr19:42751649-42751902(-)$1	1	147	187	18.3665
((((((((.....((((......))))....)))))))))	chr11:62392546-62392760(-)$1	1	18	58	16.4914
(((.(((((((((((((((...))))))))))))))).))	chr4:763944-764207(-)$1	1	171	211	18.1827
(((((.(((((((((((((...)))))))))))..)))))	chr3:49045329-49045643(+)$1	1	68	108	14.3213
....(((((((.(...((.....))...).))))))))))	chr5:140895672-140895905(-)$1	1	163	203	18.1343
(((((((((((((...(((....)))...)))))))))).	chr4:177253111-177253395(+)$1	1	112	152	18.3087

#PSSM
c : 0.16	= : 0.14	b : 0.12	# : 0.10	[ : 0.10	f : 0.06	: : 0.06	i : 0.06	" : 0.04	e : 0.04	d : 0.04	! : 0.02	a : 0.02	g : 0.02	h : 0.02	
= : 0.19	c : 0.16	# : 0.10	[ : 0.08	i : 0.08	b : 0.06	f : 0.06	" : 0.06	e : 0.04	! : 0.04	g : 0.04	d : 0.04	a : 0.02	h : 0.02	
= : 0.19	c : 0.16	[ : 0.14	# : 0.10	i : 0.08	" : 0.06	d : 0.06	e : 0.06	g : 0.06	a : 0.02	! : 0.02	h : 0.02	f : 0.02	
= : 0.25	c : 0.14	# : 0.10	e : 0.10	i : 0.10	g : 0.08	b : 0.06	d : 0.06	" : 0.04	[ : 0.04	h : 0.02	
= : 0.25	g : 0.14	c : 0.14	e : 0.10	i : 0.10	b : 0.06	d : 0.04	# : 0.04	[ : 0.04	! : 0.02	a : 0.02	" : 0.02	h : 0.02	
= : 0.25	g : 0.12	! : 0.10	i : 0.10	c : 0.10	" : 0.08	e : 0.08	[ : 0.06	d : 0.06	# : 0.04	
= : 0.25	g : 0.12	c : 0.12	! : 0.10	i : 0.10	" : 0.08	e : 0.06	# : 0.06	d : 0.04	[ : 0.04	b : 0.02	
= : 0.19	c : 0.18	g : 0.16	" : 0.10	i : 0.08	[ : 0.06	d : 0.06	b : 0.06	e : 0.04	# : 0.04	! : 0.02	
= : 0.23	c : 0.19	g : 0.14	d : 0.08	i : 0.06	# : 0.06	b : 0.06	" : 0.04	a : 0.04	! : 0.04	[ : 0.02	$ : 0.02	
= : 0.25	c : 0.14	g : 0.12	i : 0.10	! : 0.08	# : 0.08	" : 0.06	[ : 0.06	d : 0.06	b : 0.02	$ : 0.02	
= : 0.25	g : 0.10	c : 0.10	# : 0.10	d : 0.10	! : 0.08	[ : 0.08	i : 0.06	$ : 0.04	" : 0.02	e : 0.02	b : 0.02	a : 0.02	
= : 0.23	! : 0.12	# : 0.12	g : 0.08	c : 0.08	[ : 0.06	b : 0.06	d : 0.06	i : 0.06	$ : 0.04	a : 0.04	" : 0.02	e : 0.02	
= : 0.18	a : 0.10	! : 0.10	# : 0.10	c : 0.10	b : 0.08	g : 0.08	[ : 0.06	d : 0.04	$ : 0.04	e : 0.04	i : 0.04	" : 0.02	f : 0.02	
e : 0.16	= : 0.14	" : 0.12	# : 0.10	d : 0.08	g : 0.08	b : 0.08	! : 0.06	[ : 0.04	i : 0.04	c : 0.04	$ : 0.02	a : 0.02	f : 0.02	
e : 0.16	" : 0.14	! : 0.12	= : 0.12	d : 0.10	c : 0.08	# : 0.06	[ : 0.06	g : 0.04	i : 0.04	b : 0.04	$ : 0.02	f : 0.02	
c : 0.21	e : 0.14	" : 0.12	d : 0.12	! : 0.10	= : 0.10	[ : 0.08	g : 0.04	i : 0.04	# : 0.02	f : 0.02	
c : 0.27	b : 0.18	e : 0.14	d : 0.12	= : 0.08	g : 0.04	i : 0.04	# : 0.02	a : 0.02	o : 0.02	" : 0.02	! : 0.02	f : 0.02	
b : 0.23	c : 0.23	e : 0.12	o : 0.12	d : 0.08	= : 0.08	g : 0.04	i : 0.04	[ : 0.02	f : 0.02	
n : 0.40	o : 0.30	c : 0.08	b : 0.06	= : 0.06	l : 0.04	d : 0.02	a : 0.02	m : 0.02	
n : 0.40	o : 0.30	m : 0.16	l : 0.12	c : 0.02	
n : 0.40	o : 0.30	m : 0.16	l : 0.14	
n : 0.40	o : 0.30	m : 0.16	l : 0.10	e : 0.02	f : 0.02	
n : 0.40	o : 0.27	m : 0.14	= : 0.06	c : 0.04	d : 0.02	l : 0.02	e : 0.02	f : 0.02	
c : 0.25	o : 0.18	b : 0.16	d : 0.12	= : 0.10	g : 0.04	i : 0.04	a : 0.04	e : 0.04	f : 0.02	
c : 0.30	b : 0.23	e : 0.12	d : 0.12	= : 0.10	g : 0.04	i : 0.04	] : 0.02	f : 0.02	
c : 0.27	e : 0.12	d : 0.12	3 : 0.10	= : 0.10	b : 0.08	g : 0.04	4 : 0.04	i : 0.04	2 : 0.04	] : 0.02	f : 0.02	
3 : 0.25	d : 0.12	e : 0.10	2 : 0.10	= : 0.10	4 : 0.08	c : 0.06	g : 0.04	i : 0.04	] : 0.04	a : 0.02	b : 0.02	f : 0.02	
3 : 0.27	= : 0.14	4 : 0.12	e : 0.10	2 : 0.08	] : 0.06	b : 0.06	g : 0.04	i : 0.04	c : 0.04	a : 0.02	d : 0.02	
3 : 0.21	= : 0.14	4 : 0.12	b : 0.10	a : 0.08	e : 0.08	g : 0.08	c : 0.06	d : 0.04	i : 0.04	] : 0.02	2 : 0.02	
= : 0.21	4 : 0.12	] : 0.10	g : 0.10	d : 0.10	3 : 0.08	c : 0.08	i : 0.06	b : 0.06	e : 0.04	2 : 0.02	a : 0.02	
= : 0.21	g : 0.12	c : 0.12	4 : 0.10	d : 0.10	3 : 0.06	e : 0.06	i : 0.06	] : 0.06	2 : 0.04	b : 0.02	a : 0.02	" : 0.02	
= : 0.21	g : 0.14	c : 0.12	d : 0.10	i : 0.10	e : 0.08	4 : 0.06	b : 0.04	3 : 0.04	a : 0.04	] : 0.02	2 : 0.02	" : 0.02	
= : 0.23	g : 0.14	c : 0.14	e : 0.10	4 : 0.08	d : 0.08	3 : 0.06	2 : 0.06	i : 0.06	b : 0.02	" : 0.02	
= : 0.19	g : 0.14	c : 0.12	3 : 0.10	e : 0.10	2 : 0.10	] : 0.08	i : 0.08	4 : 0.04	> : 0.02	d : 0.02	
= : 0.21	c : 0.18	g : 0.16	3 : 0.10	i : 0.10	e : 0.06	b : 0.04	2 : 0.04	4 : 0.02	d : 0.02	a : 0.02	> : 0.02	] : 0.02	
= : 0.23	c : 0.14	g : 0.12	] : 0.10	i : 0.10	b : 0.08	3 : 0.06	4 : 0.04	d : 0.04	e : 0.04	> : 0.02	a : 0.02	
= : 0.27	c : 0.21	g : 0.10	i : 0.10	4 : 0.06	d : 0.06	e : 0.04	] : 0.04	b : 0.04	> : 0.02	3 : 0.02	h : 0.02	
= : 0.25	c : 0.12	i : 0.12	h : 0.10	4 : 0.08	] : 0.08	d : 0.06	g : 0.04	2 : 0.04	e : 0.02	8 : 0.02	3 : 0.02	: : 0.02	> : 0.02	
= : 0.23	c : 0.16	h : 0.10	i : 0.10	4 : 0.08	] : 0.08	d : 0.06	2 : 0.04	e : 0.02	g : 0.02	8 : 0.02	a : 0.02	3 : 0.02	: : 0.02	> : 0.02	
= : 0.16	h : 0.12	i : 0.10	] : 0.10	4 : 0.06	d : 0.06	3 : 0.06	c : 0.06	: : 0.04	b : 0.04	e : 0.04	> : 0.04	a : 0.04	2 : 0.02	g : 0.02	8 : 0.02	0 : 0.02	

#score	800.6562967958121
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF331AFC_U2AF2_transcript_m2_run1.txt

#BEAR
fffffftttttttttttffffffddd	chr17:74324788-74325059(-)$1	271	39	65	21.9111
Deeeeettttttttttteeeee::==	chr2:54175507-54175778(-)$1	271	198	224	20.4292
ggggggvvvvvvvvvvvvvggggggg	chr7:36463604-36463877(+)$1	273	71	97	24.8375
eeeeevvvvvvvvvvvvveeeee:::	chr12:116674930-116675208(-)$1	278	110	136	21.9441
"eeeeeuuuuuuuuuuuueeeee333	chr21:34929237-34929487(+)$1	250	139	165	25.0469
gggggguuuuuuuuuuuuggggggg]	chr4:151770652-151770904(-)$1	252	56	82	24.2248
ggggggvvvvvvvvvvvvvggggggg	chr12:96682923-96683179(-)$1	256	61	87	24.8375
[eeeeevvvvvvvvvvvvveeeeegg	chr3:156869893-156870147(-)$1	254	222	248	25.1914
!!eeeeettttttttttteeeee]ee	chr9:133729317-133729623(+)$1	306	232	258	24.1210
!!ddddtttttttttttdddd]dddd	chr5:145505980-145506237(-)$1	257	35	61	22.5649
ddd!!bbvvvvvvvvvvvvvbb22dd	chr16:31199472-31199697(+)$1	225	67	93	21.3392
$$eeeeettttttttttteeeee555	chr10:35317670-35317926(-)$1	256	42	68	21.1020
[fffffftttttttttttffffff]f	chr1:109240389-109240730(+)$1	341	221	247	22.5877
[eeeeeuuuuuuuuuuuueeeee]dd	chr5:149398461-149398729(+)$1	268	94	120	24.7603
ggggggvvvvvvvvvvvvvggggggg	chr12:80266576-80266842(-)$1	266	54	80	24.8375
======wwwwwwwwwwwwww======	chr8:37728035-37728342(-)$1	307	269	295	23.0915
======uuuuuuuuuuuu========	chr7:63372841-63373055(+)$1	214	7	33	24.5520
ccccccvvvvvvvvvvvvvccc]ccc	chr2:32783967-32784266(+)$1	299	109	135	24.4993
##cccvvvvvvvvvvvvvccceeeee	chr1:31452967-31453217(-)$1	250	103	129	24.3368
ffffffuuuuuuuuuuuuffffff::	chr12:72004418-72004639(-)$1	221	72	98	21.4804
hhh!!auuuuuuuuuuuua22hhhhh	chr21:33064595-33064865(-)$1	270	124	150	22.1074
gg[ddddtttttttttttdddd]ggg	chr2:174820787-174821071(-)$1	284	90	116	23.1023
ggggggvvvvvvvvvvvvvggggggg	chr13:79957731-79958047(-)$1	316	224	250	24.8375
[ddddvvvvvvvvvvvvvdddd]fff	chr11:62569574-62569846(-)$1	272	103	129	23.7847
fffffftttttttttttffffff22c	chr11:47843203-47843496(-)$1	293	151	177	22.2847
dddcccvvvvvvvvvvvvvccc]ddd	chr11:65202387-65202624(+)$1	237	79	105	24.0775
iiiiiivvvvvvvvvvvvviiiiiii	chrX:106366629-106366897(-)$1	268	83	109	24.6576
bb!!bbuuuuuuuuuuuubb22bb33	chr1:153719636-153719935(+)$1	299	107	133	21.3587
ddd[bbtttttttttttbbddddeee	chr3:9516640-9516902(+)$1	262	160	186	21.6438
cccddddtttttttttttdddd22cc	chr2:168671604-168671851(-)$1	247	211	237	22.6823
gg[cccvvvvvvvvvvvvvccc]ggg	chr14:31177072-31177354(+)$1	282	78	104	24.8589
[ddddyyyyyyyyyyyyyyyydddde	chr18:23663990-23664248(-)$1	258	209	235	19.7187
##eeeeettttttttttteeeee22e	chrX:73057180-73057451(-)$1	271	131	157	23.7462
!eeeeeuuuuuuuuuuuueeeee22b	chr7:32919442-32919658(-)$1	216	37	63	24.5717
"""cccuuuuuuuuuuuuccc4444b	chr14:60585117-60585433(+)$1	316	28	54	23.9353
ggggggwwwwwwwwwwwwwwgggggg	chr14:103148119-103148385(+)$1	266	60	86	22.9231
#eeeeewwwwwwwwwwwwwweeeee5	chr5:98229161-98229419(-)$1	258	60	86	22.2955
gggggbbtttttttttttbb]ggggg	chr14:21737042-21737296(-)$1	254	26	52	22.5836
==!!bbvvvvvvvvvvvvvbb22===	chr4:142245896-142246184(-)$1	288	69	95	23.4670
!!eeeeettttttttttteeeee22c	chr10:50362865-50363135(-)$1	270	160	186	24.0292
ccdddduuuuuuuuuuuudddd]ccc	chr1:201820935-201821245(+)$1	310	164	190	23.6698
===[ccctttttttttttccc=====	chr1:65830206-65830477(+)$1	271	156	182	23.7962
eeeeevvvvvvvvvvvvveeeee:::	chr8:61192263-61192548(-)$1	285	3	29	21.9441
ffffffvvvvvvvvvvvvvffffff:	chr11:47753435-47753693(-)$1	258	64	90	22.8144
eeeeevvvvvvvvvvvvveeeee22f	chr9:114124301-114124559(-)$1	258	90	116	24.4430
!ccc[auuuuuuuuuuuua]ccc]cc	chr3:172486683-172486967(+)$1	284	150	176	24.4269
gggggggtttttttttttggggggg]	chr17:26910579-26910798(-)$1	219	81	107	23.2051
eeeewwwwwwwwwwwwwweeeee]ee	chr8:117878830-117879073(-)$1	243	200	226	22.6485
!!ddddvvvvvvvvvvvvvdddd]ee	chr20:57564195-57564450(+)$1	255	64	90	24.6918
beeeeettttttttttteeeee22bb	chr9:134016237-134016450(+)$1	213	148	174	22.5166
!!ddddvvvvvvvvvvvvvdddd22d	chr16:67911956-67912235(+)$1	279	191	217	24.5011
fffffftttttttttttffffffeee	chr10:51049973-51050222(-)$1	249	5	31	22.1018
"ddddauuuuuuuuuuuua]ddddee	chr6:160210241-160210447(-)$1	206	91	117	23.8377
"eeeeettttttttttteeeeeeeee	chr1:160279927-160280157(-)$1	230	147	173	23.5043
e!!cccuuuuuuuuuuuuccc]eeee	chr9:133485132-133485384(+)$1	252	112	138	24.1038
ccc[ccctttttttttttccc]ccc:	chr11:118888185-118888448(-)$1	263	29	55	22.3597
eeee[atttttttttttaeeeee]cc	chr14:103801859-103802077(+)$1	218	72	98	24.0851
[fffffftttttttttttffffffcc	chr21:34929744-34930009(+)$1	265	74	100	22.6838
ddddwwwwwwwwwwwwwwddddFFFF	chr12:6604141-6604367(+)$1	226	107	133	20.0489
dd[cccuuuuuuuuuuuuccc]dddd	chr3:9489972-9490231(+)$1	259	191	217	23.5461
""cccvvvvvvvvvvvvvccc333cc	chr7:38783002-38783259(-)$1	257	114	140	24.6490
ddddddvvvvvvvvvvvvvdddd]dd	chr15:44890871-44891151(-)$1	280	2	28	23.9992

#otherMatches

#Seq PSSM
UAUGGUUAAAAAAUGAUGCCGUAGUG	chr17:74324788-74325059(-)$1	271	39	65	21.9111
CUAGGAUUAAAUUGGUUUCCUAAGUA	chr2:54175507-54175778(-)$1	271	198	224	20.4292
ACAAAUAACCCAUCUUUCAAUUUGUU	chr7:36463604-36463877(+)$1	273	71	97	24.8375
UAACUCUUGUCCUUUUCCAGUUAUGC	chr12:116674930-116675208(-)$1	278	110	136	21.9441
UAGUUUUGUUAGUAUGUUAGACUUUU	chr21:34929237-34929487(+)$1	250	139	165	25.0469
CAUCUUCCUUCAGUUUUCAAGAUGAA	chr4:151770652-151770904(-)$1	252	56	82	24.2248
GAGAGAUCCAUUAAAGCUUUUUCUUA	chr12:96682923-96683179(-)$1	256	61	87	24.8375
AGAAGCAGAAAUAAAGUAAGUUUCGU	chr3:156869893-156870147(-)$1	254	222	248	25.1914
AAAAUGACCCCAACCUUUUCGUUGCA	chr9:133729317-133729623(+)$1	306	232	258	24.1210
AGAGGCCACCAUUCUAUGCCUGGUCA	chr5:145505980-145506237(-)$1	257	35	61	22.5649
GAUUUGGUGUUAAUUUUUUUCCUUGU	chr16:31199472-31199697(+)$1	225	67	93	21.3392
AAUAAAUAUUUACUUUGAAUUUAGAU	chr10:35317670-35317926(-)$1	256	42	68	21.1020
AGAGGGCAUAGCAAGAAGGCCUUCAU	chr1:109240389-109240730(+)$1	341	221	247	22.5877
UUCUUUUUUUUUUCCAGUAGAGAUGG	chr5:149398461-149398729(+)$1	268	94	120	24.7603
AUUCUAUUGAUGUAUUAUUUGGAGUG	chr12:80266576-80266842(-)$1	266	54	80	24.8375
UAAAGAUCCUUUUCCCCUUCUCUUUA	chr8:37728035-37728342(-)$1	307	269	295	23.0915
ugucugauucagggacuacagacaga	chr7:63372841-63373055(+)$1	214	7	33	24.5520
ACACUGUUCUUUUUCUUUUCAGCUGU	chr2:32783967-32784266(+)$1	299	109	135	24.4993
UUUCCUUAUCUACUGUCUGGAGUGAA	chr1:31452967-31453217(-)$1	250	103	129	24.3368
GAUGGAAUUGUGUGUAUAUCUAUCUU	chr12:72004418-72004639(-)$1	221	72	98	21.4804
UGGGGCAGCUGGACAAAAGAACUACU	chr21:33064595-33064865(-)$1	270	124	150	22.1074
CUUUUUGUUUUCUUCAUCCAGACAGG	chr2:174820787-174821071(-)$1	284	90	116	23.1023
uauugguuccccccaccccccaaugu	chr13:79957731-79958047(-)$1	316	224	250	24.8375
CUCAUUUCUAGAUUCCUUAUGGCAGA	chr11:62569574-62569846(-)$1	272	103	129	23.7847
CCACGGAUAUCUGGGCCCUGUGGCAU	chr11:47843203-47843496(-)$1	293	151	177	22.2847
aagguauaauuuuuuaaauugcUUUU	chr11:65202387-65202624(+)$1	237	79	105	24.0775
uguuuguuuuguuuuguuuuAAAUAA	chrX:106366629-106366897(-)$1	268	83	109	24.6576
CUUUCCUUUAGUUGGUGUGGUUGGUA	chr1:153719636-153719935(+)$1	299	107	133	21.3587
AGGAGCAACAGUUUACAGCCCUUCCA	chr3:9516640-9516902(+)$1	262	160	186	21.6438
gcaaagggagagucugaaccuugaug	chr2:168671604-168671851(-)$1	247	211	237	22.6823
GGCACUUUGUACUUAGAAUGGUCCUU	chr14:31177072-31177354(+)$1	282	78	104	24.8589
uccugguuuuuuuuuccugugcaggu	chr18:23663990-23664248(-)$1	258	209	235	19.7187
acgcugcauguguccuuaguagucau	chrX:73057180-73057451(-)$1	271	131	157	23.7462
AUUUUAAACGUUAUAUUCUAAAACCG	chr7:32919442-32919658(-)$1	216	37	63	24.5717
AAAACAACUGCCACUUUAUGUAUACU	chr14:60585117-60585433(+)$1	316	28	54	23.9353
UUAUUAUAUGUGUUAAAUUUUAAUAA	chr14:103148119-103148385(+)$1	266	60	86	22.9231
AUUUGAAUUCCGUUUUUCUCUCAAAA	chr5:98229161-98229419(-)$1	258	60	86	22.2955
UGGUGUCCUCUAGGCCACGAUCGCCA	chr14:21737042-21737296(-)$1	254	26	52	22.5836
AGAUCAGAAAUUACUUAAAUGUACUU	chr4:142245896-142246184(-)$1	288	69	95	23.4670
GAUGAAAGAUGAGCUAUAUUUCAGAA	chr10:50362865-50363135(-)$1	270	160	186	24.0292
ACCAGGCCAGUGUCUUUACCUGUGUG	chr1:201820935-201821245(+)$1	310	164	190	23.6698
UUGACAUGGUAAAAGGAGGUGCAGGG	chr1:65830206-65830477(+)$1	271	156	182	23.7962
ACUCUCUUCAUGAUAUCAAGGGUUCU	chr8:61192263-61192548(-)$1	285	3	29	21.9441
GAUUUUUUUUUCGUUAUUUGAAAUCU	chr11:47753435-47753693(-)$1	258	64	90	22.8144
guuuuuuuuuuuuCAUGCAGAAUCUA	chr9:114124301-114124559(-)$1	258	90	116	24.4430
CACUCCAGUUCCUUCAAAGCAGUCAG	chr3:172486683-172486967(+)$1	284	150	176	24.4269
UCAGAGAAGGUAAUUUGGUCUUUGGU	chr17:26910579-26910798(-)$1	219	81	107	23.2051
GUUCGAGUGUAAUUUAGAGAGCAGCG	chr8:117878830-117879073(-)$1	243	200	226	22.6485
GACUGUGUUUUAGGAUUUAGCAGGGA	chr20:57564195-57564450(+)$1	255	64	90	24.6918
UGAUGUGCAUCCAAAAGACAUUGUGC	chr9:134016237-134016450(+)$1	213	148	174	22.5166
AGAUCUACAUUGAGGGGCAAGAUGAG	chr16:67911956-67912235(+)$1	279	191	217	24.5011
UUUGUUUUUAAUAUUUUAACAGAGCU	chr10:51049973-51050222(-)$1	249	5	31	22.1018
UUUCUCUCCUUUACCUCCGCAGAAAG	chr6:160210241-160210447(-)$1	206	91	117	23.8377
CAGCAGAAAAUGCAGUCCUGCUUUGU	chr1:160279927-160280157(-)$1	230	147	173	23.5043
UUUCCACCCCACCCGAAAUGGUAAGA	chr9:133485132-133485384(+)$1	252	112	138	24.1038
GAAGGCCAAAAACGUGUCGGUGUUUU	chr11:118888185-118888448(-)$1	263	29	55	22.3597
CCAGCGAUGAUGUUAAACCUGGGGGG	chr14:103801859-103802077(+)$1	218	72	98	24.0851
UAAAAGUUACUUCCCAUUACUUUUGC	chr21:34929744-34930009(+)$1	265	74	100	22.6838
AGCCUGUAGGAGUAGAAUGGCUCCCC	chr12:6604141-6604367(+)$1	226	107	133	20.0489
GGCAACGACCCUAAACAUGUUACCAG	chr3:9489972-9490231(+)$1	259	191	217	23.5461
AAGGCCGAAUGGGUAAUAGCCGAAGU	chr7:38783002-38783259(-)$1	257	114	140	24.6490
AGGCCACAAAUCACAUGGCUGGCACU	chr15:44890871-44891151(-)$1	280	2	28	23.9992

#DB
((((((...........))))))(((	chr17:74324788-74325059(-)$1	1	39	65	21.9111
)(((((...........)))))..((	chr2:54175507-54175778(-)$1	1	198	224	20.4292
((((((.............)))))))	chr7:36463604-36463877(+)$1	1	71	97	24.8375
(((((.............)))))...	chr12:116674930-116675208(-)$1	1	110	136	21.9441
.(((((............)))))...	chr21:34929237-34929487(+)$1	1	139	165	25.0469
((((((............))))))).	chr4:151770652-151770904(-)$1	1	56	82	24.2248
((((((.............)))))))	chr12:96682923-96683179(-)$1	1	61	87	24.8375
.(((((.............)))))))	chr3:156869893-156870147(-)$1	1	222	248	25.1914
..(((((...........))))).))	chr9:133729317-133729623(+)$1	1	232	258	24.1210
..((((...........)))).))))	chr5:145505980-145506237(-)$1	1	35	61	22.5649
(((..((.............))..))	chr16:31199472-31199697(+)$1	1	67	93	21.3392
..(((((...........)))))...	chr10:35317670-35317926(-)$1	1	42	68	21.1020
.((((((...........)))))).)	chr1:109240389-109240730(+)$1	1	221	247	22.5877
.(((((............))))).))	chr5:149398461-149398729(+)$1	1	94	120	24.7603
((((((.............)))))))	chr12:80266576-80266842(-)$1	1	54	80	24.8375
((((((..............))))))	chr8:37728035-37728342(-)$1	1	269	295	23.0915
((((((............))))))))	chr7:63372841-63373055(+)$1	1	7	33	24.5520
((((((.............))).)))	chr2:32783967-32784266(+)$1	1	109	135	24.4993
..(((.............))))))))	chr1:31452967-31453217(-)$1	1	103	129	24.3368
((((((............))))))..	chr12:72004418-72004639(-)$1	1	72	98	21.4804
(((..(............)..)))))	chr21:33064595-33064865(-)$1	1	124	150	22.1074
((.((((...........)))).)))	chr2:174820787-174821071(-)$1	1	90	116	23.1023
((((((.............)))))))	chr13:79957731-79958047(-)$1	1	224	250	24.8375
.((((.............)))).)))	chr11:62569574-62569846(-)$1	1	103	129	23.7847
((((((...........))))))..)	chr11:47843203-47843496(-)$1	1	151	177	22.2847
((((((.............))).)))	chr11:65202387-65202624(+)$1	1	79	105	24.0775
((((((.............)))))))	chrX:106366629-106366897(-)$1	1	83	109	24.6576
((..((............))..))..	chr1:153719636-153719935(+)$1	1	107	133	21.3587
(((.((...........))))))(((	chr3:9516640-9516902(+)$1	1	160	186	21.6438
(((((((...........))))..))	chr2:168671604-168671851(-)$1	1	211	237	22.6823
((.(((.............))).)))	chr14:31177072-31177354(+)$1	1	78	104	24.8589
.((((................)))))	chr18:23663990-23664248(-)$1	1	209	235	19.7187
..(((((...........)))))..)	chrX:73057180-73057451(-)$1	1	131	157	23.7462
.(((((............)))))..)	chr7:32919442-32919658(-)$1	1	37	63	24.5717
...(((............)))....)	chr14:60585117-60585433(+)$1	1	28	54	23.9353
((((((..............))))))	chr14:103148119-103148385(+)$1	1	60	86	22.9231
.(((((..............))))).	chr5:98229161-98229419(-)$1	1	60	86	22.2955
(((((((...........)).)))))	chr14:21737042-21737296(-)$1	1	26	52	22.5836
((..((.............))..)))	chr4:142245896-142246184(-)$1	1	69	95	23.4670
..(((((...........)))))..)	chr10:50362865-50363135(-)$1	1	160	186	24.0292
((((((............)))).)))	chr1:201820935-201821245(+)$1	1	164	190	23.6698
(((.(((...........))))))))	chr1:65830206-65830477(+)$1	1	156	182	23.7962
(((((.............)))))...	chr8:61192263-61192548(-)$1	1	3	29	21.9441
((((((.............)))))).	chr11:47753435-47753693(-)$1	1	64	90	22.8144
(((((.............)))))..)	chr9:114124301-114124559(-)$1	1	90	116	24.4430
.(((.(............).))).))	chr3:172486683-172486967(+)$1	1	150	176	24.4269
(((((((...........))))))).	chr17:26910579-26910798(-)$1	1	81	107	23.2051
((((..............))))).))	chr8:117878830-117879073(-)$1	1	200	226	22.6485
..((((.............)))).))	chr20:57564195-57564450(+)$1	1	64	90	24.6918
((((((...........)))))..))	chr9:134016237-134016450(+)$1	1	148	174	22.5166
..((((.............))))..)	chr16:67911956-67912235(+)$1	1	191	217	24.5011
((((((...........))))))(((	chr10:51049973-51050222(-)$1	1	5	31	22.1018
.(((((............).))))))	chr6:160210241-160210447(-)$1	1	91	117	23.8377
.(((((...........)))))))))	chr1:160279927-160280157(-)$1	1	147	173	23.5043
(..(((............))).))))	chr9:133485132-133485384(+)$1	1	112	138	24.1038
(((.(((...........))).))).	chr11:118888185-118888448(-)$1	1	29	55	22.3597
((((.(...........)))))).))	chr14:103801859-103802077(+)$1	1	72	98	24.0851
.((((((...........))))))))	chr21:34929744-34930009(+)$1	1	74	100	22.6838
((((..............))))))))	chr12:6604141-6604367(+)$1	1	107	133	20.0489
((.(((............))).))))	chr3:9489972-9490231(+)$1	1	191	217	23.5461
..(((.............)))...))	chr7:38783002-38783259(-)$1	1	114	140	24.6490
((((((.............)))).))	chr15:44890871-44891151(-)$1	1	2	28	23.9992

#PSSM
g : 0.16	! : 0.11	e : 0.09	[ : 0.09	d : 0.09	f : 0.08	" : 0.08	= : 0.06	c : 0.06	# : 0.04	b : 0.03	D : 0.01	$ : 0.01	h : 0.01	i : 0.01	
e : 0.20	g : 0.16	d : 0.14	f : 0.11	! : 0.09	c : 0.08	= : 0.06	# : 0.03	" : 0.03	$ : 0.01	h : 0.01	i : 0.01	b : 0.01	
e : 0.27	d : 0.19	g : 0.12	f : 0.11	c : 0.09	= : 0.04	[ : 0.04	! : 0.04	h : 0.01	i : 0.01	" : 0.01	
e : 0.27	d : 0.17	c : 0.14	g : 0.12	f : 0.11	! : 0.06	[ : 0.04	= : 0.03	i : 0.01	
e : 0.24	d : 0.16	c : 0.16	g : 0.12	f : 0.11	b : 0.04	! : 0.03	= : 0.03	[ : 0.03	w : 0.03	i : 0.01	
e : 0.19	c : 0.12	f : 0.11	g : 0.11	d : 0.11	v : 0.09	b : 0.08	a : 0.06	= : 0.03	w : 0.03	i : 0.01	y : 0.01	
v : 0.32	u : 0.22	t : 0.14	w : 0.08	e : 0.06	b : 0.03	f : 0.03	d : 0.03	c : 0.03	y : 0.01	g : 0.01	
t : 0.33	v : 0.33	u : 0.22	w : 0.08	y : 0.01	
t : 0.33	v : 0.33	u : 0.22	w : 0.08	y : 0.01	
t : 0.33	v : 0.33	u : 0.22	w : 0.08	y : 0.01	
t : 0.33	v : 0.33	u : 0.22	w : 0.08	y : 0.01	
t : 0.33	v : 0.33	u : 0.22	w : 0.08	y : 0.01	
t : 0.33	v : 0.33	u : 0.22	w : 0.08	y : 0.01	
t : 0.33	v : 0.33	u : 0.22	w : 0.08	y : 0.01	
t : 0.33	v : 0.33	u : 0.22	w : 0.08	y : 0.01	
t : 0.33	v : 0.33	u : 0.22	w : 0.08	y : 0.01	
t : 0.33	v : 0.33	u : 0.22	w : 0.08	y : 0.01	
v : 0.33	u : 0.22	t : 0.19	w : 0.08	f : 0.04	e : 0.04	d : 0.01	b : 0.01	y : 0.01	a : 0.01	
e : 0.24	v : 0.24	c : 0.11	f : 0.09	d : 0.09	w : 0.04	a : 0.04	b : 0.04	g : 0.03	= : 0.01	y : 0.01	
e : 0.25	d : 0.16	c : 0.16	f : 0.11	g : 0.09	w : 0.04	b : 0.04	] : 0.03	v : 0.01	= : 0.01	2 : 0.01	i : 0.01	y : 0.01	
e : 0.27	d : 0.17	c : 0.17	f : 0.11	g : 0.11	b : 0.03	= : 0.03	2 : 0.03	i : 0.01	y : 0.01	] : 0.01	
e : 0.29	d : 0.17	g : 0.12	f : 0.11	] : 0.06	c : 0.06	= : 0.04	2 : 0.03	b : 0.01	h : 0.01	i : 0.01	4 : 0.01	3 : 0.01	
e : 0.27	g : 0.12	d : 0.12	f : 0.11	] : 0.09	2 : 0.06	= : 0.04	c : 0.03	: : 0.01	h : 0.01	i : 0.01	b : 0.01	4 : 0.01	F : 0.01	3 : 0.01	
g : 0.16	2 : 0.14	e : 0.11	] : 0.11	d : 0.09	f : 0.08	= : 0.06	: : 0.04	c : 0.04	3 : 0.03	5 : 0.01	h : 0.01	i : 0.01	b : 0.01	4 : 0.01	F : 0.01	
g : 0.17	e : 0.16	d : 0.12	c : 0.12	2 : 0.09	= : 0.08	: : 0.04	3 : 0.03	f : 0.03	5 : 0.01	] : 0.01	h : 0.01	i : 0.01	4 : 0.01	b : 0.01	F : 0.01	
e : 0.17	g : 0.14	c : 0.14	d : 0.12	= : 0.08	: : 0.08	f : 0.04	b : 0.04	3 : 0.03	] : 0.03	5 : 0.03	h : 0.01	i : 0.01	F : 0.01	

#score	1443.9403260104611
#seq	62
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF877QKG_TROVE2_transcript_m2_run2.txt

#BEAR
gggggooooooggggg	chrX:64905648-64905893(+)$1	245	76	92	11.2481
eeeeeooooooeeeee	chr7:29962254-29962543(-)$1	289	268	284	12.0393
eeeeeooooooeeeee	chr12:56705018-56705243(-)$1	225	151	167	12.0393
b"""aooooooa333b	chr8:142412179-142412427(+)$1	248	108	124	10.0052
hhhhhoooooohhhhh	chr3:15888413-15888621(-)$1	208	41	57	9.8301
gg!!aooooooa22gg	chr3:48593819-48594108(-)$1	289	139	155	11.0714
gggggooooooggggg	chr14:100049310-100049556(+)$1	246	144	160	11.2481
eeeeeooooooeeeee	chr17:18965182-18965415(+)$1	233	127	143	12.0393
fffffoooooofffff	chrX:153662604-153662837(+)$1	233	59	75	9.8544
eeeeeooooooeeeee	chr11:65402421-65402639(+)$1	218	24	40	12.0393
eeeeeooooooeeeee	chr11:70199949-70200153(-)$1	204	112	128	12.0393
bbcccooooooccc]b	chr9:19379386-19379600(-)$1	214	76	92	9.4690
eeddddoooooodddd	chr21:38119979-38120206(+)$1	227	44	60	8.9511
eeeeeooooooeeeee	chr2:130940241-130940449(+)$1	208	187	203	12.0393
"""bboooooobb333	chr20:30307784-30308041(-)$1	257	195	211	9.0086
eeeeeooooooeeeee	chr6:74227976-74228179(-)$1	203	142	158	12.0393
eeeeeooooooeeeee	chr1:113460460-113460704(-)$1	244	111	127	12.0393
[ddddoooooodddd]	chr11:64063470-64063707(+)$1	237	194	210	10.3133
gg[aaooooooa]a]g	chr3:15888421-15888635(-)$1	214	100	116	11.2513
g"""aooooooa22gg	chr4:158689064-158689301(-)$1	237	174	190	10.6007
ggg[aooooooa]ggg	chr7:148638543-148638749(+)$1	206	115	131	11.7243
hhh[aooooooa]hhh	chr7:148638529-148638737(+)$1	208	129	145	10.8312
dd[bboooooobb]dd	chr12:103872548-103872770(-)$1	222	125	141	9.3802
ggg[aooooooa]ggg	chr7:148638489-148638722(+)$1	233	169	185	11.7243
eeeeeooooooeeeee	chr6:167411514-167411804(-)$1	290	88	104	12.0393
iiiiiooooooiiiii	chr20:23438136-23438352(-)$1	216	150	166	11.0920
gggggooooooggggg	chr6:74227985-74228200(-)$1	215	163	179	11.2481
eeeeeooooooeeeee	chr17:16344437-16344663(+)$1	226	58	74	12.0393
eeeeeooooooeeeee	chr11:70199964-70200171(-)$1	207	130	146	12.0393
)ddddoooooodddd0	chr12:45581124-45581361(-)$1	237	84	100	9.1423
eeeeeooooooeeeee	chrM:12176-12409(+)$1	233	65	81	12.0393
ddd[aooooooa]ddd	chr7:103151313-103151526(-)$1	213	121	137	11.0448
eeeeeooooooeeeee	chr6:43738624-43738851(+)$1	227	169	185	12.0393
eeeeeooooooeeeee	chr13:23726630-23726859(-)$1	229	8	24	12.0393
fffffoooooofffff	chr17:48463407-48463657(-)$1	250	11	27	9.8544
gggggooooooggggg	chr6:74227857-74228068(-)$1	211	31	47	11.2481
ggg[aooooooa]ggg	chr7:148638549-148638753(+)$1	204	109	125	11.7243
[ddddoooooodddd2	chr18:12760679-12760914(+)$1	235	169	185	10.0674
eeeeeooooooeeeee	chr12:42848504-42848722(+)$1	218	200	216	12.0393
eeeeeooooooeeeee	chr6:74227979-74228183(-)$1	204	146	162	12.0393
eeeeeooooooeeeee	chr11:118841149-118841377(+)$1	228	176	192	12.0393
gggggooooooggggg	chr11:107955586-107955844(+)$1	258	231	247	11.2481
iiiiiooooooiiiii	chr20:23438122-23438336(-)$1	214	134	150	11.0920
eeeeeooooooeeeee	chr17:18965303-18965549(+)$1	246	6	22	12.0393
iiiiiooooooiiiii	chr6:4115960-4116233(-)$1	273	150	166	11.0920
eeeeeooooooeeeee	chr12:56705047-56705257(-)$1	210	165	181	12.0393
[ddddooooooddddd	chr1:28567435-28567669(+)$1	234	31	47	10.2786
hhhhhoooooohhhhh	chr16:81479646-81479877(+)$1	231	122	138	9.8301
eeeeeooooooeeeee	chr14:50058853-50059098(-)$1	245	166	182	12.0393
ddd[aooooooa]ddd	chr2:106709714-106709965(-)$1	251	96	112	11.0448
gggggooooooggggg	chr6:74227868-74228084(-)$1	216	47	63	11.2481
ddd[aooooooa]ddd	chr7:103151285-103151513(-)$1	228	108	124	11.0448
ccc[aooooooa]ccc	chr17:43225831-43226085(+)$1	254	55	71	11.0378
fffffoooooofffff	chr7:148638537-148638743(+)$1	206	68	84	9.8544
$$cccooooooccc44	chr1:173835343-173835575(-)$1	232	102	118	9.4549
hhh[aooooooa]hhh	chr8:145621370-145621613(-)$1	243	64	80	10.8312

#otherMatches

#Seq PSSM
gcgugagccaccacgc	chrX:64905648-64905893(+)$1	245	76	92	11.2481
UGCCUUCAUUCAGGCG	chr7:29962254-29962543(-)$1	289	268	284	12.0393
ACUACGUACGUGUAGU	chr12:56705018-56705243(-)$1	225	151	167	12.0393
CAGGUGAAGGGAGAGG	chr8:142412179-142412427(+)$1	248	108	124	10.0052
uggggguaaugcccca	chr3:15888413-15888621(-)$1	208	41	57	9.8301
CUGGGGACAGGUGAGG	chr3:48593819-48594108(-)$1	289	139	155	11.0714
uaaaauauuauuuuua	chr14:100049310-100049556(+)$1	246	144	160	11.2481
gagagguagcguuuuc	chr17:18965182-18965415(+)$1	233	127	143	12.0393
CCGGAUCCUGUUCUGG	chrX:153662604-153662837(+)$1	233	59	75	9.8544
UGGAGCCCUUCCUCUA	chr11:65402421-65402639(+)$1	218	24	40	12.0393
AAUGUGAGACAGCAUU	chr11:70199949-70200153(-)$1	204	112	128	12.0393
CACAGAAGUUGCUGCU	chr9:19379386-19379600(-)$1	214	76	92	9.4690
CUGCGGCCACUACCGC	chr21:38119979-38120206(+)$1	227	44	60	8.9511
UGGCCCUGAGUGGCCA	chr2:130940241-130940449(+)$1	208	187	203	12.0393
UAAAUGAUUAAAUAGU	chr20:30307784-30308041(-)$1	257	195	211	9.0086
AAGUCAUUUGAGACUU	chr6:74227976-74228179(-)$1	203	142	158	12.0393
GGCCAACGGACUGGCC	chr1:113460460-113460704(-)$1	244	111	127	12.0393
ACAGGGUUUGGCUUGG	chr11:64063470-64063707(+)$1	237	194	210	10.3133
aagacuagcuugcugu	chr3:15888421-15888635(-)$1	214	100	116	11.2513
AUUUCUACCAUGUCUU	chr4:158689064-158689301(-)$1	237	174	190	10.6007
guuuuGCACUAAUAAC	chr7:148638543-148638749(+)$1	206	115	131	11.7243
guuuuGCACUAAUAAC	chr7:148638529-148638737(+)$1	208	129	145	10.8312
auguauaaaauuaaau	chr12:103872548-103872770(-)$1	222	125	141	9.3802
guuuuGCACUAAUAAC	chr7:148638489-148638722(+)$1	233	169	185	11.7243
cgccucagggugggcg	chr6:167411514-167411804(-)$1	290	88	104	12.0393
uauauacacacauaua	chr20:23438136-23438352(-)$1	216	150	166	11.0920
AAGUCAUUUGAGACUU	chr6:74227985-74228200(-)$1	215	163	179	11.2481
AACAGCUGAUCUUGUU	chr17:16344437-16344663(+)$1	226	58	74	12.0393
AAUGUGAGACAGCAUU	chr11:70199964-70200171(-)$1	207	130	146	12.0393
cuugucucacugcaau	chr12:45581124-45581361(-)$1	237	84	100	9.1423
CAUGUCUAACAACAUG	chrM:12176-12409(+)$1	233	65	81	12.0393
UGUGACUCCCCUGAUG	chr7:103151313-103151526(-)$1	213	121	137	11.0448
CUCAUGGACGGGUGAG	chr6:43738624-43738851(+)$1	227	169	185	12.0393
uauaaaaggcauuaua	chr13:23726630-23726859(-)$1	229	8	24	12.0393
UGAGUUCAAGUAUUUG	chr17:48463407-48463657(-)$1	250	11	27	9.8544
AAGUCAUUUGAGACUU	chr6:74227857-74228068(-)$1	211	31	47	11.2481
guuuuGCACUAAUAAC	chr7:148638549-148638753(+)$1	204	109	125	11.7243
cgggcgcgguggcuca	chr18:12760679-12760914(+)$1	235	169	185	10.0674
UGGGUCCCAUCACCCA	chr12:42848504-42848722(+)$1	218	200	216	12.0393
AAGUCAUUUGAGACUU	chr6:74227979-74228183(-)$1	204	146	162	12.0393
uuccagauuaauggag	chr11:118841149-118841377(+)$1	228	176	192	12.0393
ugaaaacauacuuuca	chr11:107955586-107955844(+)$1	258	231	247	11.2481
uauauacacacauaua	chr20:23438122-23438336(-)$1	214	134	150	11.0920
gagagguagcguuuuc	chr17:18965303-18965549(+)$1	246	6	22	12.0393
UGUCCAAGGAAGGAUG	chr6:4115960-4116233(-)$1	273	150	166	11.0920
ACUACGUACGUGUAGU	chr12:56705047-56705257(-)$1	210	165	181	12.0393
acagaauacaguuugg	chr1:28567435-28567669(+)$1	234	31	47	10.2786
CCUGGAAUAUCUCAGG	chr16:81479646-81479877(+)$1	231	122	138	9.8301
UUUUUGCAUGGAAAAA	chr14:50058853-50059098(-)$1	245	166	182	12.0393
GCUGCGUAUCUGGGGC	chr2:106709714-106709965(-)$1	251	96	112	11.0448
AAGUCAUUUGAGACUU	chr6:74227868-74228084(-)$1	216	47	63	11.2481
UGUGACUCCCCUGAUG	chr7:103151285-103151513(-)$1	228	108	124	11.0448
ucgggggaggacgcgg	chr17:43225831-43226085(+)$1	254	55	71	11.0378
guuaaguugauuuaac	chr7:148638537-148638743(+)$1	206	68	84	9.8544
AUCAUGAAGAGAUGUA	chr1:173835343-173835575(-)$1	232	102	118	9.4549
GGUUCCCAGCAGCACU	chr8:145621370-145621613(-)$1	243	64	80	10.8312

#DB
(((((......)))))	chrX:64905648-64905893(+)$1	1	76	92	11.2481
(((((......)))))	chr7:29962254-29962543(-)$1	1	268	284	12.0393
(((((......)))))	chr12:56705018-56705243(-)$1	1	151	167	12.0393
(...(......)...)	chr8:142412179-142412427(+)$1	1	108	124	10.0052
(((((......)))))	chr3:15888413-15888621(-)$1	1	41	57	9.8301
((..(......)..))	chr3:48593819-48594108(-)$1	1	139	155	11.0714
(((((......)))))	chr14:100049310-100049556(+)$1	1	144	160	11.2481
(((((......)))))	chr17:18965182-18965415(+)$1	1	127	143	12.0393
(((((......)))))	chrX:153662604-153662837(+)$1	1	59	75	9.8544
(((((......)))))	chr11:65402421-65402639(+)$1	1	24	40	12.0393
(((((......)))))	chr11:70199949-70200153(-)$1	1	112	128	12.0393
(((((......))).)	chr9:19379386-19379600(-)$1	1	76	92	9.4690
))((((......))))	chr21:38119979-38120206(+)$1	1	44	60	8.9511
(((((......)))))	chr2:130940241-130940449(+)$1	1	187	203	12.0393
...((......))...	chr20:30307784-30308041(-)$1	1	195	211	9.0086
(((((......)))))	chr6:74227976-74228179(-)$1	1	142	158	12.0393
(((((......)))))	chr1:113460460-113460704(-)$1	1	111	127	12.0393
.((((......)))).	chr11:64063470-64063707(+)$1	1	194	210	10.3133
((.((......).).)	chr3:15888421-15888635(-)$1	1	100	116	11.2513
(...(......)..))	chr4:158689064-158689301(-)$1	1	174	190	10.6007
(((.(......).)))	chr7:148638543-148638749(+)$1	1	115	131	11.7243
(((.(......).)))	chr7:148638529-148638737(+)$1	1	129	145	10.8312
((.((......)).))	chr12:103872548-103872770(-)$1	1	125	141	9.3802
(((.(......).)))	chr7:148638489-148638722(+)$1	1	169	185	11.7243
(((((......)))))	chr6:167411514-167411804(-)$1	1	88	104	12.0393
(((((......)))))	chr20:23438136-23438352(-)$1	1	150	166	11.0920
(((((......)))))	chr6:74227985-74228200(-)$1	1	163	179	11.2481
(((((......)))))	chr17:16344437-16344663(+)$1	1	58	74	12.0393
(((((......)))))	chr11:70199964-70200171(-)$1	1	130	146	12.0393
.((((......)))).	chr12:45581124-45581361(-)$1	1	84	100	9.1423
(((((......)))))	chrM:12176-12409(+)$1	1	65	81	12.0393
(((.(......).)))	chr7:103151313-103151526(-)$1	1	121	137	11.0448
(((((......)))))	chr6:43738624-43738851(+)$1	1	169	185	12.0393
(((((......)))))	chr13:23726630-23726859(-)$1	1	8	24	12.0393
(((((......)))))	chr17:48463407-48463657(-)$1	1	11	27	9.8544
(((((......)))))	chr6:74227857-74228068(-)$1	1	31	47	11.2481
(((.(......).)))	chr7:148638549-148638753(+)$1	1	109	125	11.7243
.((((......)))).	chr18:12760679-12760914(+)$1	1	169	185	10.0674
(((((......)))))	chr12:42848504-42848722(+)$1	1	200	216	12.0393
(((((......)))))	chr6:74227979-74228183(-)$1	1	146	162	12.0393
(((((......)))))	chr11:118841149-118841377(+)$1	1	176	192	12.0393
(((((......)))))	chr11:107955586-107955844(+)$1	1	231	247	11.2481
(((((......)))))	chr20:23438122-23438336(-)$1	1	134	150	11.0920
(((((......)))))	chr17:18965303-18965549(+)$1	1	6	22	12.0393
(((((......)))))	chr6:4115960-4116233(-)$1	1	150	166	11.0920
(((((......)))))	chr12:56705047-56705257(-)$1	1	165	181	12.0393
.((((......)))))	chr1:28567435-28567669(+)$1	1	31	47	10.2786
(((((......)))))	chr16:81479646-81479877(+)$1	1	122	138	9.8301
(((((......)))))	chr14:50058853-50059098(-)$1	1	166	182	12.0393
(((.(......).)))	chr2:106709714-106709965(-)$1	1	96	112	11.0448
(((((......)))))	chr6:74227868-74228084(-)$1	1	47	63	11.2481
(((.(......).)))	chr7:103151285-103151513(-)$1	1	108	124	11.0448
(((.(......).)))	chr17:43225831-43226085(+)$1	1	55	71	11.0378
(((((......)))))	chr7:148638537-148638743(+)$1	1	68	84	9.8544
..(((......)))..	chr1:173835343-173835575(-)$1	1	102	118	9.4549
(((.(......).)))	chr8:145621370-145621613(-)$1	1	64	80	10.8312

#PSSM
e : 0.37	g : 0.21	h : 0.07	d : 0.07	f : 0.05	[ : 0.05	i : 0.05	b : 0.03	" : 0.01	) : 0.01	c : 0.01	$ : 0.01	
e : 0.37	g : 0.19	d : 0.14	h : 0.07	" : 0.05	f : 0.05	i : 0.05	b : 0.01	c : 0.01	$ : 0.01	
e : 0.35	g : 0.16	d : 0.14	h : 0.07	" : 0.05	f : 0.05	c : 0.05	i : 0.05	[ : 0.03	! : 0.01	
e : 0.35	[ : 0.16	g : 0.10	d : 0.08	f : 0.05	i : 0.05	" : 0.03	h : 0.03	c : 0.03	b : 0.03	! : 0.01	a : 0.01	
e : 0.35	a : 0.23	g : 0.10	d : 0.08	f : 0.05	i : 0.05	h : 0.03	c : 0.03	b : 0.03	
o : 0.98	d : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
e : 0.35	a : 0.23	g : 0.10	d : 0.07	f : 0.05	i : 0.05	h : 0.03	c : 0.03	b : 0.03	o : 0.01	
e : 0.35	] : 0.17	g : 0.10	d : 0.08	f : 0.05	i : 0.05	h : 0.03	2 : 0.03	c : 0.03	b : 0.03	3 : 0.01	
e : 0.35	g : 0.16	d : 0.14	h : 0.07	f : 0.05	c : 0.05	i : 0.05	3 : 0.03	2 : 0.03	a : 0.01	] : 0.01	
e : 0.35	g : 0.19	d : 0.16	h : 0.07	f : 0.05	i : 0.05	3 : 0.03	] : 0.03	c : 0.01	4 : 0.01	
e : 0.35	g : 0.21	d : 0.10	h : 0.07	f : 0.05	i : 0.05	b : 0.03	3 : 0.01	] : 0.01	0 : 0.01	2 : 0.01	c : 0.01	4 : 0.01	

#score	620.7784961858879
#seq	56
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_CDS_m2_run1.txt

#BEAR
ccc!!hhhhhhhhcccooooooccc22hhhhhhhh22ccc	chr11:2154293-2154497(-)$1	204	109	149	18.5863
gggggggiiiiiiiiiooooooiiiiiiiii333gggggg	chr1:171501931-171502194(+)$1	263	222	262	16.0311
""ffffff$$$$$ddddoooooodddd333ffffff333e	chr2:27656452-27656696(+)$1	244	155	195	13.1112
!bb[ccceeeee[cccooooooccceeeee]cccbb]a]g	chr11:2154792-2154995(-)$1	203	80	120	18.0944
c$$$$$eeeee[ddddooooooddddeeeeeccc]cccgg	chr2:198266369-198266609(-)$1	240	146	186	15.2913
!bb[ccceeeee[cccooooooccceeeee]cccbb]a]e	chr11:2154714-2154924(-)$1	210	9	49	17.9954
eee[cccbb"""a[cccmmmmccca333bb]ccc]eeeee	chr6:144811184-144811396(+)$1	212	96	136	12.0108
ccc!!hhhhhhhhcccooooooccc22hhhhhhhh22ccc	chr11:2154304-2154508(-)$1	204	120	160	18.5863
""ffffff$$$$$ddddoooooodddd333ffffff333e	chr2:27656496-27656749(+)$1	253	111	151	13.1112
c"""dddd!!ddddcccnnnnnccc]dddd]dddd4444c	chr6:163982909-163983142(+)$1	233	122	162	14.6093
c####bb!!gggggggooooooggggggg22bb333ccc2	chr9:100777544-100777768(+)$1	224	75	115	16.2619
&&&ffffffccc[cccooooooccc333ccc]ffffffbb	chr6:7577911-7578154(+)$1	243	144	184	13.6040
gg[ccc"""dddd[cccnnnnnccc]dddd]cccgggggg	chr11:2156532-2156740(-)$1	208	96	136	14.4043
gg[ccc"""dddd[cccnnnnnccc]dddd]cccgggggg	chr11:2156549-2156753(-)$1	204	109	149	14.4043
ccc!!eeeee[bbcccooooooccc]bb]eeeee]ccc]b	chr20:31022408-31022667(+)$1	259	95	135	15.9627
ccc!!hhhhhhhhcccooooooccc22hhhhhhhh22ccc	chr11:2154300-2154504(-)$1	204	116	156	18.5863
!eeeee[eeeee[cccnnnnnccc]eeeeeeeeee22ddd	chr12:76444245-76444486(-)$1	241	132	172	12.4035
ccc[ccc[ccc!!ddddmmmmdddd22cccccc]ccceee	chr5:37000477-37000771(+)$1	294	108	148	12.8047
!bb[ccceeeee[cccooooooccceeeee]cccbb]a]g	chr11:2154724-2154949(-)$1	225	34	74	18.0944
dddd[eeeee####ddddlllddddeeeee]dddd333dd	chr2:232576494-232576722(+)$1	228	28	68	11.5151
gg[ccc"""dddd[cccnnnnnccc]dddd]cccgggggg	chr11:2156511-2156718(-)$1	207	74	114	14.4043
ccc"""ccc!!eeeeeooooooeeeee4444ccc4444cc	chr11:2154657-2154862(-)$1	205	131	171	17.6921
ccc!!hhhhhhhhcccooooooccc22hhhhhhhh22ccc	chr11:2154289-2154493(-)$1	204	105	145	18.5863
!bb[ggggggg"""ddddmmmmddddggggggg]bb333d	chr17:38317950-38318264(+)$1	314	253	293	12.3239
"ccc[a!!a####cccooooooccc333a22accc55555	chr10:79796937-79797164(+)$1	227	62	102	16.1043
ggggggg!!gggggggoooooogggggggggggggg7777	chr22:24313705-24313933(-)$1	228	67	107	14.8689
ggg[bb"""gggggggooooooggggggg>>>>>>>>>>>	chr9:19376247-19376477(-)$1	230	168	208	14.3455
ccc!!hhhhhhhhcccooooooccc22hhhhhhhh22ccc	chr11:2154278-2154480(-)$1	202	92	132	18.5863
"bb[ccc[a!!a[ddddnnnnndddda22a]ccc]bb333	chr1:183111816-183112092(+)$1	276	22	62	14.3424
dd!!bb[bb[bb[cccooooooccc]bb333bb22bb333	chr6:7581496-7581744(+)$1	248	112	152	15.5242
###bbbbccc####bboooooobb333ccc]bb]bb333e	chr3:121412757-121413036(-)$1	279	19	59	15.5127
:bb[ddddccc!!ddddoooooodddd333ccc22ddddb	chr17:42477029-42477318(-)$1	289	57	97	12.8825
iiiii!!a[ccc!!bboooooobb22ccc]a]iiiiiiii	chr19:10478979-10479312(-)$1	333	72	112	15.6625
ccc"""ccc!!eeeeeooooooeeeee4444ccc4444cc	chr11:2154648-2154850(-)$1	202	119	159	17.6921
[a"""dddd####cccnnnnnccc333dddd>>>>>>>>>	chr10:120809209-120809533(-)$1	324	143	183	13.3370
eeeccc!!ccc!!cccrrrrrrrrrccc4444ccc4444c	chr17:46929766-46930067(+)$1	301	73	113	13.4667
ccc!!hhhhhhhhcccooooooccc22hhhhhhhh22ccc	chr11:2154267-2154471(-)$1	204	83	123	18.5863
dd[dddda[ddddcccooooooccc]dddd]a]dddd]dd	chr9:139734531-139734765(+)$1	234	176	216	15.0101
dd####ccc!!eeeeeooooooeeeee4444ccc4444dd	chr11:2154653-2154857(-)$1	204	126	166	16.7713
ccc!!hhhhhhhhcccooooooccc22hhhhhhhh22ccc	chr11:2154257-2154466(-)$1	209	78	118	18.5863
$ccc[dddd!!eeeeennnnneeeeedddd]ccc4444cc	chr9:99700176-99700462(-)$1	286	160	200	13.2412
gg$$$$$gggggggbbnnnnnbb333gggggggggggggg	chr6:56401474-56401724(-)$1	250	56	96	12.0088
gggg!!ggggggg[bboooooobb]ggggggggggggggc	chr12:76453493-76453740(-)$1	247	15	55	15.6728
ffeeeee[ccc!!cccoooooocccccceeeee22fffff	chr1:93307260-93307482(+)$1	222	56	96	15.3950
hh[ccc"""dddd[cccnnnnnccc]dddd]ccchhhhhh	chr11:2156496-2156699(-)$1	203	55	95	12.9056
ffeeeee[ccc!!cccoooooocccccceeeee22fffff	chr1:93307222-93307454(+)$1	232	94	134	15.3950
ccc!!hhhhhhhhcccooooooccc22hhhhhhhh22ccc	chr11:2154246-2154457(-)$1	211	69	109	18.5863
ccc"""ccc!!eeeeeooooooeeeee4444ccc4444cc	chr11:2154650-2154853(-)$1	203	122	162	17.6921
!bb[ccceeeee[cccooooooccceeeee]cccbb]a]g	chr11:2154761-2154986(-)$1	225	71	111	18.0944
eeee"""eeeeeddddoooooodddd]eeeee333eeeee	chr6:56438417-56438761(-)$1	344	78	118	14.0570
ccc!!hhhhhhhhcccooooooccc22hhhhhhhh22ccc	chr11:2154271-2154478(-)$1	207	90	130	18.5863

#otherMatches

#Seq PSSM
GCGCCUGCGCAGGGGCCUGCCUGCCCUCCUGCGUGCCCGC	chr11:2154293-2154497(-)$1	204	109	149	18.5863
GGUUACAGUUUGGGGUUUGUAUAUUUUAAAUAUAUGUAAU	chr1:171501931-171502194(+)$1	263	222	262	16.0311
GGUUGUGUGGAAUGAGGUACAGUUCUCUGAACGCAAGAAC	chr2:27656452-27656696(+)$1	244	155	195	13.1112
CUGUGCUGUGGGACUUCCAGGCAGGCCCGCAAGCCGUGUG	chr11:2154792-2154995(-)$1	203	80	120	18.0944
AAUUAUUCCAGAUUUGUUAAUGUAAACUGGAUAUGUUUCA	chr2:198266369-198266609(-)$1	240	146	186	15.2913
CUGUGCUGUGGGACUUCCAGGCAGGCCCGCAAGCCGUGUG	chr11:2154714-2154924(-)$1	210	9	49	17.9954
GACCUCCCCAGAGAGUAGGACUGCCAGAGGAGGAAGUCAG	chr6:144811184-144811396(+)$1	212	96	136	12.0108
GCGCCUGCGCAGGGGCCUGCCUGCCCUCCUGCGUGCCCGC	chr11:2154304-2154508(-)$1	204	120	160	18.5863
GGUUGUGUGGAAUGAGGUACAGUUCUCUGAACGCAAGAAC	chr2:27656496-27656749(+)$1	253	111	151	13.1112
CUGAAGAAGAUGCAGCUGAUGGAGCUUGCGAUUCUGAAUG	chr6:163982909-163983142(+)$1	233	122	162	14.6093
UAAAGUCAAUUUUUGUUACUGUACagaggaggaagaaggu	chr9:100777544-100777768(+)$1	224	75	115	16.2619
UCUGCUGAACAUACCUAUCAAGAGGACCAUGAUUCAGUCC	chr6:7577911-7578154(+)$1	243	144	184	13.6040
UGGUGGACACCCUCCAGUUCGUCUGUGGGGACCGCGGCUU	chr11:2156532-2156740(-)$1	208	96	136	14.4043
UGGUGGACACCCUCCAGUUCGUCUGUGGGGACCGCGGCUU	chr11:2156549-2156753(-)$1	204	109	149	14.4043
CAGCAGUGGUGAUGGUGGUGAGGCCUGUGGCCACCCUGAG	chr20:31022408-31022667(+)$1	259	95	135	15.9627
GCGCCUGCGCAGGGGCCUGCCUGCCCUCCUGCGUGCCCGC	chr11:2154300-2154504(-)$1	204	116	156	18.5863
UGUUAUAUUUUACUGGAGAAGCUAUUGAAGAUGAUGAUGA	chr12:76444245-76444486(-)$1	241	132	172	12.4035
GGAGUUCAGGUGGUGGUCGUUAUCGAAACCGAAGUCCGUC	chr5:37000477-37000771(+)$1	294	108	148	12.8047
CUGUGCUGUGGGACUUCCAGGCAGGCCCGCAAGCCGUGUG	chr11:2154724-2154949(-)$1	225	34	74	18.0944
AGGCCGGGCAUCAGGAGCAACGCUCUGUCCAGCCUGGGGC	chr2:232576494-232576722(+)$1	228	28	68	11.5151
UGGUGGACACCCUCCAGUUCGUCUGUGGGGACCGCGGCUU	chr11:2156511-2156718(-)$1	207	74	114	14.4043
CCCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCGG	chr11:2154657-2154862(-)$1	205	131	171	17.6921
GCGCCUGCGCAGGGGCCUGCCUGCCCUCCUGCGUGCCCGC	chr11:2154289-2154493(-)$1	204	105	145	18.5863
UAGAGAUUCUUGAGGCUUGGAAGAGUAAGGAUCCCUUUAU	chr17:38317950-38318264(+)$1	314	253	293	12.3239
CGCAAGAACAGAAUGAAGAAAGUCAGGGGGACUGCAAAGG	chr10:79796937-79797164(+)$1	227	62	102	16.1043
AAGAUGUGGUAUUAGCCAAGGAGCUGAUGAUAUCUUUUUC	chr22:24313705-24313933(-)$1	228	67	107	14.8689
UGAAUCCAGUCAGAAAUAAGAUUUUUUGAGUAACAAAUAA	chr9:19376247-19376477(-)$1	230	168	208	14.3455
GCGCCUGCGCAGGGGCCUGCCUGCCCUCCUGCGUGCCCGC	chr11:2154278-2154480(-)$1	202	92	132	18.5863
AUCAUGAAGGACAUUCGCAAUCUGGAGGACAUCAGGAAGA	chr1:183111816-183112092(+)$1	276	22	62	14.3424
UGGAGUACGAUGACCUGAGGAGAGGACGAAGCGAAGCGGA	chr6:7581496-7581744(+)$1	248	112	152	15.5242
AAAGCCAGAUGAAACAAAAGGAUGAAGAUCUUGAGCGAAG	chr3:121412757-121413036(-)$1	279	19	59	15.5127
ACGAGGACCCAAACCAGAACCCCCUGGGAGUGGCAGUCCC	chr17:42477029-42477318(-)$1	289	57	97	12.8825
CUGCCCAGGGGCAACGUGAGACUGAAGCUGCAGGUGGGGG	chr19:10478979-10479312(-)$1	333	72	112	15.6625
CCCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCGG	chr11:2154648-2154850(-)$1	202	119	159	17.6921
AGGGAGUUGGAAAUUGAAGAACGAGAACGGCGUAGAGAGG	chr10:120809209-120809533(-)$1	324	143	183	13.3370
UUGGUUAUGUUCACUAUUUUUGUUUUAGGCCCAGCUGUCA	chr17:46929766-46930067(+)$1	301	73	113	13.4667
GCGCCUGCGCAGGGGCCUGCCUGCCCUCCUGCGUGCCCGC	chr11:2154267-2154471(-)$1	204	83	123	18.5863
UGCGGUCCUGGGACCAGGGCUGUGGCUUCCUGUGACUCCA	chr9:139734531-139734765(+)$1	234	176	216	15.0101
CCCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCGG	chr11:2154653-2154857(-)$1	204	126	166	16.7713
GCGCCUGCGCAGGGGCCUGCCUGCCCUCCUGCGUGCCCGC	chr11:2154257-2154466(-)$1	209	78	118	18.5863
CCUCCCUCUGCUGCUCUACCUGGGCAAGGGUGAGUCCUUC	chr9:99700176-99700462(-)$1	286	160	200	13.2412
UUAUUCAGAGUGCUGCCAAAAGCACUAGCACUCAGGGCUU	chr6:56401474-56401724(-)$1	250	56	96	12.0088
AGAAACCACUGGUUUUAGCUUGGAUGCCAGUGUUUUUAUA	chr12:76453493-76453740(-)$1	247	15	55	15.6728
UUGUAGGUGGAACCGUCCCAAAAUGUCCCUUGCUCAGAAG	chr1:93307260-93307482(+)$1	222	56	96	15.3950
UGGUGGACACCCUCCAGUUCGUCUGUGGGGACCGCGGCUU	chr11:2156496-2156699(-)$1	203	55	95	12.9056
UUGUAGGUGGAACCGUCCCAAAAUGUCCCUUGCUCAGAAG	chr1:93307222-93307454(+)$1	232	94	134	15.3950
GCGCCUGCGCAGGGGCCUGCCUGCCCUCCUGCGUGCCCGC	chr11:2154246-2154457(-)$1	211	69	109	18.5863
CCCUUUCCCACUCUCUAGAGACAGAGAAAUAGGGCUUCGG	chr11:2154650-2154853(-)$1	203	122	162	17.6921
CUGUGCUGUGGGACUUCCAGGCAGGCCCGCAAGCCGUGUG	chr11:2154761-2154986(-)$1	225	71	111	18.0944
GACAUUGUUGGGAGAUAUGAGGAUCUGUCCAAGUCUGUUA	chr6:56438417-56438761(-)$1	344	78	118	14.0570
GCGCCUGCGCAGGGGCCUGCCUGCCCUCCUGCGUGCCCGC	chr11:2154271-2154478(-)$1	207	90	130	18.5863

#DB
(((..(((((((((((......)))..))))))))..)))	chr11:2154293-2154497(-)$1	1	109	149	18.5863
((((((((((((((((......)))))))))...))))))	chr1:171501931-171502194(+)$1	1	222	262	16.0311
..((((((.....((((......))))...))))))...)	chr2:27656452-27656696(+)$1	1	155	195	13.1112
.((.((((((((.(((......)))))))).))))).).)	chr11:2154792-2154995(-)$1	1	80	120	18.0944
(.....(((((.((((......)))))))))))).)))))	chr2:198266369-198266609(-)$1	1	146	186	15.2913
.((.((((((((.(((......)))))))).))))).).)	chr11:2154714-2154924(-)$1	1	9	49	17.9954
(((.(((((...(.(((....))))...)).))).)))))	chr6:144811184-144811396(+)$1	1	96	136	12.0108
(((..(((((((((((......)))..))))))))..)))	chr11:2154304-2154508(-)$1	1	120	160	18.5863
..((((((.....((((......))))...))))))...)	chr2:27656496-27656749(+)$1	1	111	151	13.1112
(...((((..(((((((.....))).)))).))))....)	chr6:163982909-163983142(+)$1	1	122	162	14.6093
(....((..(((((((......)))))))..))...))).	chr9:100777544-100777768(+)$1	1	75	115	16.2619
...(((((((((.(((......)))...))).))))))))	chr6:7577911-7578154(+)$1	1	144	184	13.6040
((.(((...((((.(((.....))).)))).)))))))))	chr11:2156532-2156740(-)$1	1	96	136	14.4043
((.(((...((((.(((.....))).)))).)))))))))	chr11:2156549-2156753(-)$1	1	109	149	14.4043
(((..(((((.(((((......))).)).))))).))).)	chr20:31022408-31022667(+)$1	1	95	135	15.9627
(((..(((((((((((......)))..))))))))..)))	chr11:2154300-2154504(-)$1	1	116	156	18.5863
.(((((.(((((.(((.....))).))))))))))..)))	chr12:76444245-76444486(-)$1	1	132	172	12.4035
(((.(((.(((..((((....))))..)))))).)))(((	chr5:37000477-37000771(+)$1	1	108	148	12.8047
.((.((((((((.(((......)))))))).))))).).)	chr11:2154724-2154949(-)$1	1	34	74	18.0944
((((.(((((....((((...))))))))).))))...))	chr2:232576494-232576722(+)$1	1	28	68	11.5151
((.(((...((((.(((.....))).)))).)))))))))	chr11:2156511-2156718(-)$1	1	74	114	14.4043
(((...(((..(((((......)))))....)))....))	chr11:2154657-2154862(-)$1	1	131	171	17.6921
(((..(((((((((((......)))..))))))))..)))	chr11:2154289-2154493(-)$1	1	105	145	18.5863
.((.(((((((...((((....))))))))))).))...)	chr17:38317950-38318264(+)$1	1	253	293	12.3239
.(((.(..(....(((......)))...)..)))).....	chr10:79796937-79797164(+)$1	1	62	102	16.1043
(((((((..(((((((......))))))))))))))....	chr22:24313705-24313933(-)$1	1	67	107	14.8689
(((.((...(((((((......)))))))...........	chr9:19376247-19376477(-)$1	1	168	208	14.3455
(((..(((((((((((......)))..))))))))..)))	chr11:2154278-2154480(-)$1	1	92	132	18.5863
.((.(((.(..(.((((.....)))))..).))).))...	chr1:183111816-183112092(+)$1	1	22	62	14.3424
((..((.((.((.(((......))).))...))..))...	chr6:7581496-7581744(+)$1	1	112	152	15.5242
...(((((((....((......))...))).)).))...)	chr3:121412757-121413036(-)$1	1	19	59	15.5127
.((.(((((((..((((......))))...)))..)))))	chr17:42477029-42477318(-)$1	1	57	97	12.8825
(((((..(.(((..((......))..))).).))))))))	chr19:10478979-10479312(-)$1	1	72	112	15.6625
(((...(((..(((((......)))))....)))....))	chr11:2154648-2154850(-)$1	1	119	159	17.6921
.(...((((....(((.....)))...)))).........	chr10:120809209-120809533(-)$1	1	143	183	13.3370
((((((..(((..(((.........)))....)))....)	chr17:46929766-46930067(+)$1	1	73	113	13.4667
(((..(((((((((((......)))..))))))))..)))	chr11:2154267-2154471(-)$1	1	83	123	18.5863
((.(((((.(((((((......))).)))).).)))).))	chr9:139734531-139734765(+)$1	1	176	216	15.0101
((....(((..(((((......)))))....)))....))	chr11:2154653-2154857(-)$1	1	126	166	16.7713
(((..(((((((((((......)))..))))))))..)))	chr11:2154257-2154466(-)$1	1	78	118	18.5863
.(((.((((..(((((.....))))))))).)))....))	chr9:99700176-99700462(-)$1	1	160	200	13.2412
((.....(((((((((.....))...))))))))))))))	chr6:56401474-56401724(-)$1	1	56	96	12.0088
((((..(((((((.((......)).))))))))))))))(	chr12:76453493-76453740(-)$1	1	15	55	15.6728
(((((((.(((..(((......)))))))))))..)))))	chr1:93307260-93307482(+)$1	1	56	96	15.3950
((.(((...((((.(((.....))).)))).)))))))))	chr11:2156496-2156699(-)$1	1	55	95	12.9056
(((((((.(((..(((......)))))))))))..)))))	chr1:93307222-93307454(+)$1	1	94	134	15.3950
(((..(((((((((((......)))..))))))))..)))	chr11:2154246-2154457(-)$1	1	69	109	18.5863
(((...(((..(((((......)))))....)))....))	chr11:2154650-2154853(-)$1	1	122	162	17.6921
.((.((((((((.(((......)))))))).))))).).)	chr11:2154761-2154986(-)$1	1	71	111	18.0944
((((...(((((((((......)))).)))))...)))))	chr6:56438417-56438761(-)$1	1	78	118	14.0570
(((..(((((((((((......)))..))))))))..)))	chr11:2154271-2154478(-)$1	1	90	130	18.5863

#PSSM
c : 0.33	g : 0.15	! : 0.11	" : 0.07	d : 0.07	e : 0.05	f : 0.03	& : 0.01	# : 0.01	: : 0.01	i : 0.01	[ : 0.01	$ : 0.01	h : 0.01	
c : 0.31	g : 0.15	b : 0.13	e : 0.07	d : 0.07	" : 0.05	# : 0.03	f : 0.03	$ : 0.01	& : 0.01	i : 0.01	a : 0.01	h : 0.01	
c : 0.31	b : 0.13	e : 0.11	[ : 0.09	g : 0.07	# : 0.05	f : 0.03	$ : 0.03	" : 0.03	& : 0.01	d : 0.01	! : 0.01	i : 0.01	
! : 0.21	[ : 0.19	c : 0.13	" : 0.09	e : 0.07	g : 0.05	f : 0.05	$ : 0.03	# : 0.03	d : 0.03	b : 0.01	i : 0.01	
c : 0.23	! : 0.21	" : 0.09	g : 0.05	f : 0.05	d : 0.05	e : 0.05	[ : 0.05	b : 0.05	$ : 0.03	# : 0.03	i : 0.01	
c : 0.23	h : 0.17	d : 0.09	e : 0.09	b : 0.07	" : 0.07	g : 0.05	f : 0.05	$ : 0.03	! : 0.03	a : 0.01	# : 0.01	
c : 0.21	h : 0.17	" : 0.11	e : 0.09	d : 0.09	g : 0.07	f : 0.05	! : 0.05	b : 0.03	[ : 0.03	$ : 0.01	
h : 0.17	e : 0.17	" : 0.09	c : 0.09	d : 0.07	! : 0.07	[ : 0.07	f : 0.05	g : 0.05	b : 0.03	a : 0.03	i : 0.01	
c : 0.19	h : 0.17	e : 0.17	" : 0.09	! : 0.05	g : 0.05	$ : 0.03	b : 0.03	a : 0.03	[ : 0.03	d : 0.03	i : 0.01	f : 0.01	
h : 0.17	e : 0.17	c : 0.15	! : 0.13	g : 0.11	d : 0.09	$ : 0.03	# : 0.03	i : 0.01	" : 0.01	[ : 0.01	
h : 0.17	e : 0.13	c : 0.13	d : 0.11	g : 0.11	! : 0.11	# : 0.07	$ : 0.03	i : 0.01	" : 0.01	[ : 0.01	b : 0.01	
e : 0.21	h : 0.17	d : 0.11	g : 0.09	! : 0.09	# : 0.07	$ : 0.03	" : 0.03	c : 0.03	b : 0.03	i : 0.01	[ : 0.01	a : 0.01	
h : 0.17	[ : 0.15	d : 0.15	! : 0.11	g : 0.09	e : 0.09	# : 0.07	$ : 0.03	i : 0.01	a : 0.01	b : 0.01	" : 0.01	
c : 0.45	d : 0.15	[ : 0.11	e : 0.09	g : 0.07	# : 0.03	i : 0.01	" : 0.01	! : 0.01	
c : 0.56	d : 0.17	e : 0.09	b : 0.07	g : 0.05	i : 0.01	
c : 0.56	d : 0.17	e : 0.09	b : 0.07	g : 0.05	i : 0.01	
o : 0.64	d : 0.13	c : 0.11	n : 0.07	r : 0.01	
o : 0.70	n : 0.19	m : 0.03	d : 0.03	r : 0.01	
o : 0.70	n : 0.19	m : 0.05	l : 0.01	r : 0.01	
o : 0.70	n : 0.19	m : 0.05	l : 0.01	r : 0.01	
o : 0.70	n : 0.19	m : 0.05	l : 0.01	r : 0.01	
o : 0.70	n : 0.11	c : 0.05	d : 0.03	m : 0.01	r : 0.01	e : 0.01	b : 0.01	
c : 0.54	d : 0.11	e : 0.09	b : 0.07	o : 0.05	g : 0.05	i : 0.01	r : 0.01	
c : 0.54	d : 0.17	e : 0.09	g : 0.05	b : 0.05	i : 0.01	r : 0.01	3 : 0.01	
c : 0.49	d : 0.17	e : 0.09	g : 0.05	3 : 0.05	] : 0.03	i : 0.01	a : 0.01	2 : 0.01	r : 0.01	
2 : 0.21	e : 0.21	] : 0.15	d : 0.13	3 : 0.11	g : 0.07	c : 0.05	i : 0.01	
e : 0.21	2 : 0.19	d : 0.19	g : 0.11	3 : 0.09	c : 0.07	b : 0.03	i : 0.01	a : 0.01	] : 0.01	
h : 0.17	e : 0.15	d : 0.15	3 : 0.11	g : 0.11	c : 0.11	4 : 0.07	b : 0.03	i : 0.01	2 : 0.01	
e : 0.19	h : 0.17	d : 0.15	g : 0.11	4 : 0.09	3 : 0.07	c : 0.07	i : 0.01	b : 0.01	] : 0.01	a : 0.01	2 : 0.01	
e : 0.21	h : 0.17	d : 0.15	4 : 0.09	3 : 0.07	g : 0.07	c : 0.05	2 : 0.03	i : 0.01	b : 0.01	> : 0.01	a : 0.01	] : 0.01	
] : 0.29	h : 0.17	e : 0.11	4 : 0.09	g : 0.07	c : 0.05	f : 0.03	2 : 0.03	i : 0.01	> : 0.01	3 : 0.01	a : 0.01	d : 0.01	
c : 0.35	h : 0.17	e : 0.09	g : 0.07	b : 0.05	f : 0.03	d : 0.03	] : 0.03	a : 0.03	> : 0.03	3 : 0.01	4 : 0.01	
c : 0.39	h : 0.17	e : 0.07	g : 0.07	f : 0.05	b : 0.05	3 : 0.03	d : 0.03	> : 0.03	i : 0.01	] : 0.01	
c : 0.35	h : 0.17	2 : 0.07	3 : 0.05	f : 0.05	d : 0.05	] : 0.05	g : 0.05	e : 0.03	> : 0.03	i : 0.01	
h : 0.19	g : 0.13	b : 0.11	4 : 0.09	] : 0.07	2 : 0.07	f : 0.05	d : 0.05	c : 0.05	3 : 0.03	> : 0.03	e : 0.01	i : 0.01	
2 : 0.19	b : 0.15	g : 0.13	4 : 0.13	f : 0.09	c : 0.05	e : 0.03	3 : 0.03	> : 0.03	d : 0.03	5 : 0.01	i : 0.01	h : 0.01	
2 : 0.19	4 : 0.13	g : 0.11	3 : 0.09	] : 0.07	c : 0.07	f : 0.05	e : 0.03	> : 0.03	b : 0.03	d : 0.03	5 : 0.01	7 : 0.01	i : 0.01	h : 0.01	
c : 0.23	3 : 0.13	4 : 0.13	g : 0.11	a : 0.07	e : 0.05	f : 0.05	d : 0.03	> : 0.03	5 : 0.01	7 : 0.01	i : 0.01	] : 0.01	h : 0.01	
c : 0.27	g : 0.13	3 : 0.11	] : 0.09	d : 0.09	e : 0.05	4 : 0.03	> : 0.03	f : 0.03	b : 0.01	5 : 0.01	7 : 0.01	i : 0.01	h : 0.01	
c : 0.31	g : 0.17	e : 0.13	d : 0.09	b : 0.05	> : 0.03	3 : 0.03	f : 0.03	2 : 0.01	5 : 0.01	7 : 0.01	i : 0.01	h : 0.01	

#score	791.3910546496085
#seq	51
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF832JDM_UTP3_transcript_m2_run2.txt

#BEAR
=====uuuuuuuuuuuu====	chr1:109642770-109643014(+)$1	244	159	180	16.0465
eeeeesssssssssseeeee:	chr21:38119982-38120192(+)$1	210	185	206	15.9127
[eeeeerrrrrrrrreeeee3	chr17:42993801-42994008(-)$1	207	136	157	14.1152
[eeeeerrrrrrrrreeeee3	chr17:42993785-42993991(-)$1	206	119	140	14.1152
[eeeeerrrrrrrrreeeee3	chr17:42993791-42994001(-)$1	210	129	150	14.1152
eeeeesssssssssseeeee:	chr21:38119992-38120204(+)$1	212	175	196	15.9127
##cccssssssssssccc22e	chr17:78935426-78935654(+)$1	228	196	217	13.6484
[ddddtttttttttttddddb	chr11:62620298-62620513(-)$1	215	182	203	16.7085
[bbuuuuuuuuuuuubbffff	chr12:6054295-6054503(-)$1	208	108	129	14.8373

#otherMatches

#Seq PSSM
GCUUGGAGCGUGUUAGGCGAG	chr1:109642770-109643014(+)$1	244	159	180	16.0465
gcAGCUGCCCUUCGUGCUGCU	chr21:38119982-38120192(+)$1	210	185	206	15.9127
AGCACAGCCAGCUCAUGUGUA	chr17:42993801-42994008(-)$1	207	136	157	14.1152
AGCACAGCCAGCUCAUGUGUA	chr17:42993785-42993991(-)$1	206	119	140	14.1152
AGCACAGCCAGCUCAUGUGUA	chr17:42993791-42994001(-)$1	210	129	150	14.1152
gcAGCUGCCCUUCGUGCUGCU	chr21:38119992-38120204(+)$1	212	175	196	15.9127
GUCUGCACAUAAAUUCAGUUC	chr17:78935426-78935654(+)$1	228	196	217	13.6484
AUUGGUUUUAUUUUUUCCAGG	chr11:62620298-62620513(-)$1	215	182	203	16.7085
UGCGUCCACAUCAUGGCGACU	chr12:6054295-6054503(-)$1	208	108	129	14.8373

#DB
(((((............))))	chr1:109642770-109643014(+)$1	1	159	180	16.0465
(((((..........))))).	chr21:38119982-38120192(+)$1	1	185	206	15.9127
.(((((.........))))).	chr17:42993801-42994008(-)$1	1	136	157	14.1152
.(((((.........))))).	chr17:42993785-42993991(-)$1	1	119	140	14.1152
.(((((.........))))).	chr17:42993791-42994001(-)$1	1	129	150	14.1152
(((((..........))))).	chr21:38119992-38120204(+)$1	1	175	196	15.9127
..(((..........)))..)	chr17:78935426-78935654(+)$1	1	196	217	13.6484
.((((...........)))))	chr11:62620298-62620513(-)$1	1	182	203	16.7085
.((............))))))	chr12:6054295-6054503(-)$1	1	108	129	14.8373

#PSSM
[ : 0.55	e : 0.22	= : 0.11	# : 0.11	
e : 0.55	= : 0.11	# : 0.11	d : 0.11	b : 0.11	
e : 0.55	= : 0.11	c : 0.11	d : 0.11	b : 0.11	
e : 0.55	= : 0.11	c : 0.11	d : 0.11	u : 0.11	
e : 0.55	= : 0.11	c : 0.11	d : 0.11	u : 0.11	
s : 0.33	e : 0.33	u : 0.22	t : 0.11	
s : 0.33	r : 0.33	u : 0.22	t : 0.11	
s : 0.33	r : 0.33	u : 0.22	t : 0.11	
s : 0.33	r : 0.33	u : 0.22	t : 0.11	
s : 0.33	r : 0.33	u : 0.22	t : 0.11	
s : 0.33	r : 0.33	u : 0.22	t : 0.11	
s : 0.33	r : 0.33	u : 0.22	t : 0.11	
s : 0.33	r : 0.33	u : 0.22	t : 0.11	
s : 0.33	r : 0.33	u : 0.22	t : 0.11	
s : 0.33	r : 0.33	u : 0.22	t : 0.11	
e : 0.55	u : 0.11	c : 0.11	t : 0.11	b : 0.11	
e : 0.55	u : 0.11	c : 0.11	d : 0.11	b : 0.11	
e : 0.55	= : 0.11	c : 0.11	d : 0.11	f : 0.11	
e : 0.55	= : 0.11	2 : 0.11	d : 0.11	f : 0.11	
e : 0.55	= : 0.11	2 : 0.11	d : 0.11	f : 0.11	
3 : 0.33	: : 0.22	= : 0.11	e : 0.11	b : 0.11	f : 0.11	

#score	135.41216650507775
#seq	9
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_UTR_m3_run1.txt

#BEAR
fff!!===========bbpppppppbb]===========	chr3:13461595-13461878(-)$1	283	171	210	13.4680
dddd[a!!dddd####cccoooooocccdddd22adddd	chr19:2426018-2426261(-)$1	243	118	157	10.5377
ee:eeeee!!ccc!!bbrrrrrrrrrbb22ccc22eeee	chr8:30669833-30670093(-)$1	260	208	247	12.1931
!ccc!!bb[ggggggg[apppppppa]ggggggg]bb33	chr22:41488522-41488777(+)$1	255	49	88	12.5101
dddd"""===========ppppppp===========ddd	chr8:22224856-22225153(+)$1	297	197	236	13.4940
e!!bb[eeeee####ddddllldddd333eeeee]bb33	chr17:80192804-80193051(+)$1	247	139	178	8.6450
!ccc!!dddd####fffffflllffffff22dddd]ccc	chr8:144678135-144678384(-)$1	249	57	96	8.4663
EEEccc[===========ppppppp===========ccc	chr19:10613047-10613294(-)$1	247	17	56	10.8869
b[bb[bb[cccccc[bb[annnnna]bb]ccc]ccc]bb	chr1:1243139-1243406(-)$1	267	16	55	8.2467
f[hhhhhhhh!!cccssssssssssccc22hhhhhhhh]	chr19:1882350-1882593(-)$1	243	191	230	8.8548
!ccc[ggggggg[avvvvvvvvvvvvva]gggggggccc	chr19:1474095-1474313(-)$1	218	52	91	10.0839
ff"""dddd[a[bb[cccoooooocccbbaddddfffff	chr14:105260478-105260741(-)$1	263	149	188	9.7785
eeeeeeeeeexxxxxxxxxxxxxxxeeeee333eeeee]	chr21:46933935-46934215(-)$1	280	54	93	9.6893
""a[eeeee[ccceeeeeqqqqqqqqeeeee4444ccc]	chr3:195635834-195636067(-)$1	233	91	130	11.8964
gggeeeee[bb[ccc[bboooooobbccc]bbeeeeedd	chr19:1470187-1470438(-)$1	251	155	194	10.1406
[ccc==========[cccpppppppccc]==========	chr3:48470759-48471037(-)$1	278	216	255	14.7286
gg!!dddd!!gggggggrrrrrrrrrggggggg22dddd	chr19:1473975-1474223(-)$1	248	19	58	13.4742
[ccc"""a"""ddddddddnnnnndddd]dddd333a44	chr17:79674334-79674589(+)$1	255	72	111	9.1787
ccc!!eeeee[a[eeeeellleeeeea]eeeee4444cc	chr17:74380105-74380331(+)$1	226	24	63	9.1045
[cccdddd!!ffffffrrrrrrrrrffffff4444dddd	chr17:41622773-41623039(+)$1	266	3	42	13.0533
dd[===========[bbqqqqqqqqbb===========2	chr8:101963107-101963384(-)$1	277	75	114	13.1388
ccc"""eeeeeeeeeerrrrrrrrreeeee]eeeeeccc	chr3:49755246-49755516(+)$1	270	160	199	12.7346
[a[eeeee[bb"""cccrrrrrrrrrccc22bbeeeee]	chr16:4660955-4661201(-)$1	246	142	181	13.6216
"a[dddd[bb####cccqqqqqqqqccc4444bb]dddd	chr16:53165002-53165291(+)$1	289	173	212	11.9894
!!bb[bb[ffffff!!bboooooobb333ffffff]bb]	chr6:170123959-170124248(-)$1	289	68	107	10.2288
%dddd!!a!!a!!cccrrrrrrrrrccc22a22a22ddd	chr19:34287643-34287903(+)$1	260	102	141	13.2993
eee[eeeee####eeeeeqqqqqqqqeeeeeeeeee]ee	chr16:633864-634185(+)$1	321	9	48	11.0955
eeee[eeeee[bb[ccc[aqqqqqqqqa]cccbb22eee	chr19:1585110-1585430(-)$1	320	123	162	9.7512
eeee"""===========ppppppp===========333	chr17:7477111-7477400(+)$1	289	227	266	14.0848
f"""bbdddd"""eeeeepppppppeeeee4444dddd>	chr17:80193051-80193295(+)$1	244	114	153	11.2623
[ccc[bb!!ffffffssssssssssffffff]bbccc22	chr17:80192609-80192887(+)$1	278	40	79	10.8087
ii[dddd!!bb[bb[cccpppppppccc22bb]bb333d	chr22:39916980-39917260(+)$1	280	87	126	11.9487
[ffffffbb[gggggggbboooooobb22ggggggg]bb	chr17:80193559-80193807(+)$1	248	176	215	9.8435
[dddd[eeeee[eeeeesssssssssseeeee]eeeee2	chr11:611772-612075(+)$1	303	72	111	11.0862
dd[dddd####bb[eeeeeooooooeeeee]bbdddddd	chr20:361770-362013(+)$1	243	36	75	10.2870
ga[dddd"""bbeeeeeqqqqqqqqeeeee]bb]dddd]	chr16:4661151-4661403(-)$1	252	127	166	10.9400
=====[bb[a"""a[eeeeeooooooeeeeea333a]bb	chr17:63556547-63556789(-)$1	242	97	136	11.1914
====="""ffffff!!bbqqqqqqqqbb]ffffff333=	chr20:57267737-57268015(+)$1	278	57	96	11.4645
iiiii[a"""ffffff[bboooooobb22ffffff333a	chr16:75284498-75284756(-)$1	258	152	191	11.1544
ddd!!ffffff"""ccc[bblllbb]ccc333ffffff2	chr16:2029100-2029389(+)$1	289	152	191	8.1183
c[bbbbccc[ccc[cccqqqqqqqqccc]ccc]ccc]bb	chr17:74379908-74380155(+)$1	247	124	163	10.7702
$$$ccccccdddd!!cccpppppppccc22dddd]ccc5	chr2:85766911-85767161(+)$1	250	132	171	10.5816
bb[ccc[bb[bb####cccnnnnnccc22bb]bb]ccc]	chr11:842825-843110(+)$1	285	223	262	8.7532
ffff[ffffff!!eeeeerrrrrrrrreeeee22fffff	chr17:79859880-79860152(-)$1	272	44	83	11.4578
cbb[dddd[eeeee[cccqqqqqqqqccceeeeedddd]	chr17:75452362-75452610(+)$1	248	65	104	10.9751
ddddddda!!dddd[bbbboooooobb22bb]dddd22a	chr17:80192373-80192681(+)$1	308	167	206	9.4204
Beeeee[a[eeeee!!bbpppppppbb22eeeeea]eee	chr17:79877701-79877942(-)$1	241	21	60	10.6711
[ccc[bb!!ffffffssssssssssffffff]bbccc22	chr17:80192561-80192788(+)$1	227	88	127	10.8087

#otherMatches

#Seq PSSM
gGCUGCUGCUGCUGACGCUGUCGGUGCUGUUGGCGGCGG	chr3:13461595-13461878(-)$1	283	171	210	13.4680
GGCCUGCUGCUCCUGUUGCUUUCACGUAGAGUCUCGGCC	chr19:2426018-2426261(-)$1	243	118	157	10.5377
ACGAGUGUAAGCAGCUGAACGAGAACCAAGUGCGGACGC	chr8:30669833-30670093(-)$1	260	208	247	12.1931
UCGCCCCCGCCUCCUUGUGGCGAUGAGAAGGAGGAGGAC	chr22:41488522-41488777(+)$1	255	49	88	12.5101
CGCCCGGACGGCUGGGUGGAGGCUGCACCUGGCCGUGGU	chr8:22224856-22225153(+)$1	297	197	236	13.4940
CAACUUGACUCAAACGAGCUGAGCUCCUGGAGUUUAGAA	chr17:80192804-80193051(+)$1	247	139	178	8.6450
UCCUCUGGAGGACUAGGCCCUCUGGGCUUUGCUCCCGGG	chr8:144678135-144678384(-)$1	249	57	96	8.4663
CAGGGCGCCUCCGAGUUCCCCGCCAGGACUCGGAGGGCC	chr19:10613047-10613294(-)$1	247	17	56	10.8869
CGGGCGGUGCGCGCGGGCGGCUGACUUUGGCGACGCUCC	chr1:1243139-1243406(-)$1	267	16	55	8.2467
CCCUAGGAGCCUGGGAUGUAUCCUGCCUUUGUUUCUAGA	chr19:1882350-1882593(-)$1	243	191	230	8.8548
AAGGCUUUUCAUCCUAAAUAGCAACUUGAGUGGAAACCU	chr19:1474095-1474313(-)$1	218	52	91	10.0839
CCCACUCAGUGUCGUCAGAGCCCCCUGUGCCUGAGGCGU	chr14:105260478-105260741(-)$1	263	149	188	9.7785
CCAUUUCCUGGGCUCGUAGAUCUAGCAGGAUGUGAUGGG	chr21:46933935-46934215(-)$1	280	54	93	9.6893
GGGGUGCAGGAGCGCGGGGAGGGGAGCCCGCGGAGGCUG	chr3:195635834-195636067(-)$1	233	91	130	11.8964
GCAGGCCCAUGGGGCAGCCAGACCGCGCCGCAGGGCCGG	chr19:1470187-1470438(-)$1	251	155	194	10.1406
GCGGGAGGGGCGGGCAGCGGGCGCAGUUUUCCGCCCCUC	chr3:48470759-48471037(-)$1	278	216	255	14.7286
GCUGGGCCCUGCACAUAAAGCUUUCGUGUGUGUCUGGCC	chr19:1473975-1474223(-)$1	248	19	58	13.4742
GGCCGGACAGGCCGCACAGACCUACUGUGGCGGGAGGGA	chr17:79674334-79674589(+)$1	255	72	111	9.1787
GCUGGUGGGCGGCGGGCGAGACGCCCCGGCCUGGAGAGG	chr17:74380105-74380331(+)$1	226	24	63	9.1045
GCUUAGUCUGGGGGACGAGGUUGGGGUCCUCGGGUGACU	chr17:41622773-41623039(+)$1	266	3	42	13.0533
CUGACUUUUUUUGCUCCUUGUGAACGGGCGGGGGAGGUG	chr8:101963107-101963384(-)$1	277	75	114	13.1388
AGCCUAUGGAGCUGGCGGACUCAGAGCCAGCCUUCAGCU	chr3:49755246-49755516(+)$1	270	160	199	12.7346
AGACUCCUUCAGGAUGcuuuugcuucgcagaugaggaga	chr16:4660955-4661201(-)$1	246	142	181	13.6216
CAGUCAUGGCGAAGCGCGAGAGUCAGCGAGCGGCGGUGA	chr16:53165002-53165291(+)$1	289	173	212	11.9894
aggggccggcccccgggcgggcgggcggagggggcgggg	chr6:170123959-170124248(-)$1	289	68	107	10.2288
ggguugggggCGAGAGAGAAAGUAACUCCAGGACGAGAC	chr19:34287643-34287903(+)$1	260	102	141	13.2993
ACUGAGGCCGAAAGUGCCUGCCAGACGGCACGGUCUGGG	chr16:633864-634185(+)$1	321	9	48	11.0955
agcuggggcugggacuggguuugggucugcggccgaggc	chr19:1585110-1585430(-)$1	320	123	162	9.7512
UCAGAAAGGGUCACCCCCUUAUGUCGGGGGUGGCCUGGC	chr17:7477111-7477400(+)$1	289	227	266	14.0848
CAUCCAGGGACAAGGGGCCAGCUCUGCCCCCACUUCCCC	chr17:80193051-80193295(+)$1	244	114	153	11.2623
CGUCACGGGGGACCCACCGGGUCAGGGGUCUGCGGACAC	chr17:80192609-80192887(+)$1	278	40	79	10.8087
GCGGCGCGGGCGUGAGUCAAgggcgggcggugggcgggg	chr22:39916980-39917260(+)$1	280	87	126	11.9487
GUGGGUGCCGGGCAGCUGCCCCUCAGCUGAGCUGCCGGG	chr17:80193559-80193807(+)$1	248	176	215	9.8435
GAGCUGUCGGGAGUGGCGGGAAUCGGGGCCAUGCCCGGG	chr11:611772-612075(+)$1	303	72	111	11.0862
GGGCGAGGUACUCGGCGGGGUGCGGCCUGCGGACUcgcc	chr20:361770-362013(+)$1	243	36	75	10.2870
UGAGCCUAAAGCCCAGGCUUGUCUCCUUGGUGCCAGGCC	chr16:4661151-4661403(-)$1	252	127	166	10.9400
UGGCGGGGGCGGAGAGGGGGCAGAUACCCCCCGGGGGUC	chr17:63556547-63556789(-)$1	242	97	136	11.1914
ccugcacgucucgcgagcagcccggagcggcGGGGGAGG	chr20:57267737-57268015(+)$1	278	57	96	11.4645
CCCUCUCGAGGGUCCGAGAGGCUGAUCGCUGGACCGAGG	chr16:75284498-75284756(-)$1	258	152	191	11.1544
GGUCGUCUCCUCCACGGAACCCCGUCCCGCUCAGGAGAG	chr16:2029100-2029389(+)$1	289	152	191	8.1183
CAGCGCGCUAGGCGGCCUCAGGCUCGGUAGCCCAGCUGC	chr17:74379908-74380155(+)$1	247	124	163	10.7702
CACUGCCUCAGUGGUUAGGUCUUGACUACACACUGGAGA	chr2:85766911-85767161(+)$1	250	132	171	10.5816
ggguccggcgcgggggcucggggagagggcgggcggggg	chr11:842825-843110(+)$1	285	223	262	8.7532
AGCCACCGCCUGGGCCGCCUUAUAUCUGCGGCGAGGGCG	chr17:79859880-79860152(-)$1	272	44	83	11.4578
UUGGCUUCGUUACCUGCACUAGGCUUUGUGGUGAGAGGG	chr17:75452362-75452610(+)$1	248	65	104	10.9751
GGAGGAGGAGUGAGGAGCCACGCACGGAACUGCUCAGAC	chr17:80192373-80192681(+)$1	308	167	206	9.4204
CCUGGCUGUGGGUGGCCAUCCAUUUUGAGCACCUCUGCC	chr17:79877701-79877942(-)$1	241	21	60	10.6711
CGUCACGGGGGACCCACCGGGUCAGGGGUCUGCGGACAC	chr17:80192561-80192788(+)$1	227	88	127	10.8087

#DB
(((..(((((((((((((.......)).)))))))))))	chr3:13461595-13461878(-)$1	1	171	210	13.4680
((((.(..((((....(((......)))))))..)))))	chr19:2426018-2426261(-)$1	1	118	157	10.5377
)).(((((..(((..((.........))..)))..))))	chr8:30669833-30670093(-)$1	1	208	247	12.1931
.(((..((.(((((((.(.......).))))))).))..	chr22:41488522-41488777(+)$1	1	49	88	12.5101
((((...(((((((((((.......))))))))))))))	chr8:22224856-22225153(+)$1	1	197	236	13.4940
(..((.(((((....((((...))))...))))).))..	chr17:80192804-80193051(+)$1	1	139	178	8.6450
.(((..((((....((((((...))))))..)))).)))	chr8:144678135-144678384(-)$1	1	57	96	8.4663
((((((.(((((((((((.......))))))))))))))	chr19:10613047-10613294(-)$1	1	17	56	10.8869
(.((.((.((((((.((.(.....).)).))).))).))	chr1:1243139-1243406(-)$1	1	16	55	8.2467
(.((((((((..(((..........)))..)))))))).	chr19:1882350-1882593(-)$1	1	191	230	8.8548
.(((.(((((((.(.............).))))))))))	chr19:1474095-1474313(-)$1	1	52	91	10.0839
((...((((.(.((.(((......)))))))))))))))	chr14:105260478-105260741(-)$1	1	149	188	9.7785
((((((((((...............)))))...))))).	chr21:46933935-46934215(-)$1	1	54	93	9.6893
..(.(((((.((((((((........)))))....))).	chr3:195635834-195636067(-)$1	1	91	130	11.8964
)))(((((.((.(((.((......))))).)))))))((	chr19:1470187-1470438(-)$1	1	155	194	10.1406
.(((((((((((((.(((.......))).))))))))))	chr3:48470759-48471037(-)$1	1	216	255	14.7286
((..((((..(((((((.........)))))))..))))	chr19:1473975-1474223(-)$1	1	19	58	13.4742
.(((...(...((((((((.....)))).))))...)..	chr17:79674334-79674589(+)$1	1	72	111	9.1787
(((..(((((.(.(((((...)))))).)))))....))	chr17:74380105-74380331(+)$1	1	24	63	9.1045
.(((((((..((((((.........))))))....))))	chr17:41622773-41623039(+)$1	1	3	42	13.0533
((.(((((((((((.((........))))))))))))).	chr8:101963107-101963384(-)$1	1	75	114	13.1388
(((...((((((((((.........))))).))))))))	chr3:49755246-49755516(+)$1	1	160	199	12.7346
.(.(((((.((...(((.........)))..))))))).	chr16:4660955-4661201(-)$1	1	142	181	13.6216
.(.((((.((....(((........)))....)).))))	chr16:53165002-53165291(+)$1	1	173	212	11.9894
..((.((.((((((..((......))...)))))).)).	chr6:170123959-170124248(-)$1	1	68	107	10.2288
.((((..(..(..(((.........)))..)..)..)))	chr19:34287643-34287903(+)$1	1	102	141	13.2993
(((.(((((....(((((........)))))))))).))	chr16:633864-634185(+)$1	1	9	48	11.0955
((((.(((((.((.(((.(........).)))))..)))	chr19:1585110-1585430(-)$1	1	123	162	9.7512
((((...(((((((((((.......)))))))))))...	chr17:7477111-7477400(+)$1	1	227	266	14.0848
(...((((((...(((((.......)))))....)))).	chr17:80193051-80193295(+)$1	1	114	153	11.2623
.(((.((..((((((..........)))))).)))))..	chr17:80192609-80192887(+)$1	1	40	79	10.8087
((.((((..((.((.(((.......)))..)).))...)	chr22:39916980-39917260(+)$1	1	87	126	11.9487
.((((((((.(((((((((......))..))))))).))	chr17:80193559-80193807(+)$1	1	176	215	9.8435
.((((.(((((.(((((..........))))).))))).	chr11:611772-612075(+)$1	1	72	111	11.0862
((.((((....((.(((((......))))).))))))))	chr20:361770-362013(+)$1	1	36	75	10.2870
((.((((...(((((((........))))).)).)))).	chr16:4661151-4661403(-)$1	1	127	166	10.9400
(((((.((.(...(.(((((......))))))...).))	chr17:63556547-63556789(-)$1	1	97	136	11.1914
(((((...((((((..((........)).))))))...)	chr20:57267737-57268015(+)$1	1	57	96	11.4645
(((((.(...((((((.((......))..))))))...)	chr16:75284498-75284756(-)$1	1	152	191	11.1544
(((..((((((...(((.((...)).)))...)))))).	chr16:2029100-2029389(+)$1	1	152	191	8.1183
(.(((((((.(((.(((........))).))).))).))	chr17:74379908-74380155(+)$1	1	124	163	10.7702
...((((((((((..(((.......)))..)))).))).	chr2:85766911-85767161(+)$1	1	132	171	10.5816
((.(((.((.((....(((.....)))..)).)).))).	chr11:842825-843110(+)$1	1	223	262	8.7532
((((.((((((..(((((.........)))))..)))))	chr17:79859880-79860152(-)$1	1	44	83	11.4578
(((.((((.(((((.(((........)))))))))))).	chr17:75452362-75452610(+)$1	1	65	104	10.9751
((((((((..((((.((((......))..)).))))..)	chr17:80192373-80192681(+)$1	1	167	206	9.4204
((((((.(.(((((..((.......))..)))))).)))	chr17:79877701-79877942(-)$1	1	21	60	10.6711
.(((.((..((((((..........)))))).)))))..	chr17:80192561-80192788(+)$1	1	88	127	10.8087

#PSSM
[ : 0.16	d : 0.12	e : 0.12	f : 0.10	! : 0.08	c : 0.08	g : 0.06	b : 0.04	" : 0.04	i : 0.04	= : 0.04	E : 0.02	% : 0.02	$ : 0.02	B : 0.02	
c : 0.20	d : 0.16	e : 0.12	f : 0.08	[ : 0.06	a : 0.06	! : 0.04	" : 0.04	g : 0.04	i : 0.04	= : 0.04	b : 0.04	E : 0.02	$ : 0.02	
c : 0.20	[ : 0.14	d : 0.12	e : 0.10	b : 0.08	f : 0.06	! : 0.04	" : 0.04	= : 0.04	: : 0.02	E : 0.02	h : 0.02	a : 0.02	g : 0.02	i : 0.02	$ : 0.02	
c : 0.22	d : 0.18	e : 0.14	! : 0.08	b : 0.08	" : 0.06	[ : 0.06	= : 0.06	f : 0.04	h : 0.02	i : 0.02	
d : 0.20	[ : 0.16	e : 0.14	! : 0.10	" : 0.10	= : 0.08	b : 0.06	c : 0.06	h : 0.02	f : 0.02	i : 0.02	
e : 0.18	d : 0.18	b : 0.12	" : 0.10	[ : 0.08	= : 0.06	! : 0.06	c : 0.06	f : 0.06	a : 0.02	h : 0.02	g : 0.02	
e : 0.22	d : 0.22	b : 0.12	" : 0.08	= : 0.06	[ : 0.06	f : 0.06	! : 0.04	c : 0.04	h : 0.02	g : 0.02	a : 0.02	
e : 0.22	= : 0.12	d : 0.12	! : 0.08	b : 0.08	a : 0.08	[ : 0.06	" : 0.06	f : 0.04	c : 0.04	h : 0.02	g : 0.02	# : 0.02	
! : 0.16	e : 0.16	= : 0.12	[ : 0.12	d : 0.08	f : 0.08	c : 0.06	" : 0.06	b : 0.06	h : 0.02	g : 0.02	# : 0.02	
e : 0.16	= : 0.12	f : 0.12	! : 0.10	[ : 0.10	d : 0.08	b : 0.08	" : 0.06	g : 0.04	# : 0.04	c : 0.02	h : 0.02	a : 0.02	
f : 0.16	= : 0.12	e : 0.10	b : 0.10	c : 0.08	g : 0.08	# : 0.08	d : 0.06	" : 0.06	a : 0.04	[ : 0.04	! : 0.02	x : 0.02	
= : 0.12	f : 0.12	d : 0.08	c : 0.08	g : 0.08	# : 0.08	[ : 0.08	" : 0.08	b : 0.08	! : 0.06	e : 0.06	x : 0.02	a : 0.02	
= : 0.12	# : 0.12	c : 0.12	f : 0.12	e : 0.10	b : 0.08	" : 0.08	g : 0.06	d : 0.06	[ : 0.04	! : 0.04	x : 0.02	
e : 0.20	= : 0.12	f : 0.12	# : 0.10	c : 0.08	g : 0.06	[ : 0.06	! : 0.04	a : 0.04	b : 0.04	d : 0.04	" : 0.04	x : 0.02	
e : 0.18	[ : 0.16	c : 0.16	! : 0.10	f : 0.10	= : 0.08	# : 0.06	g : 0.06	v : 0.02	x : 0.02	d : 0.02	
c : 0.22	e : 0.20	= : 0.08	b : 0.08	g : 0.06	f : 0.06	s : 0.06	! : 0.06	# : 0.04	d : 0.04	v : 0.02	x : 0.02	[ : 0.02	
c : 0.25	b : 0.18	e : 0.18	= : 0.06	s : 0.06	r : 0.06	[ : 0.04	d : 0.04	g : 0.04	f : 0.02	v : 0.02	x : 0.02	
b : 0.16	c : 0.14	e : 0.14	r : 0.12	s : 0.08	q : 0.08	= : 0.06	[ : 0.06	d : 0.04	a : 0.02	f : 0.02	v : 0.02	x : 0.02	
p : 0.20	q : 0.16	r : 0.14	s : 0.08	b : 0.08	o : 0.06	c : 0.04	d : 0.04	a : 0.04	e : 0.04	f : 0.02	v : 0.02	x : 0.02	l : 0.02	
p : 0.20	q : 0.18	o : 0.16	r : 0.14	s : 0.08	n : 0.06	l : 0.04	f : 0.02	v : 0.02	x : 0.02	e : 0.02	b : 0.02	
p : 0.20	o : 0.18	q : 0.18	r : 0.14	l : 0.08	s : 0.08	n : 0.06	v : 0.02	x : 0.02	
p : 0.20	o : 0.18	q : 0.18	r : 0.14	s : 0.08	l : 0.06	n : 0.06	v : 0.02	x : 0.02	e : 0.02	
p : 0.20	o : 0.18	q : 0.18	r : 0.14	s : 0.08	n : 0.06	l : 0.04	d : 0.02	v : 0.02	x : 0.02	e : 0.02	
p : 0.20	o : 0.18	q : 0.18	r : 0.14	s : 0.08	n : 0.06	d : 0.02	f : 0.02	v : 0.02	x : 0.02	e : 0.02	b : 0.02	
p : 0.20	q : 0.18	r : 0.14	o : 0.12	s : 0.08	b : 0.06	d : 0.04	c : 0.04	f : 0.02	a : 0.02	v : 0.02	x : 0.02	e : 0.02	
c : 0.20	b : 0.16	e : 0.12	q : 0.10	r : 0.08	f : 0.08	= : 0.06	d : 0.04	] : 0.04	a : 0.02	v : 0.02	s : 0.02	o : 0.02	
c : 0.29	b : 0.18	e : 0.16	f : 0.08	= : 0.06	3 : 0.04	] : 0.02	v : 0.02	g : 0.02	d : 0.02	a : 0.02	q : 0.02	s : 0.02	r : 0.02	
c : 0.25	e : 0.20	2 : 0.10	b : 0.08	= : 0.08	f : 0.08	] : 0.04	g : 0.04	3 : 0.04	a : 0.04	d : 0.02	
e : 0.22	2 : 0.20	] : 0.14	= : 0.10	f : 0.08	c : 0.08	g : 0.04	3 : 0.04	d : 0.02	b : 0.02	4 : 0.02	
e : 0.29	2 : 0.14	= : 0.12	f : 0.12	g : 0.08	c : 0.06	d : 0.04	b : 0.04	a : 0.02	] : 0.02	4 : 0.02	3 : 0.02	
e : 0.18	= : 0.12	f : 0.12	d : 0.08	c : 0.08	g : 0.08	b : 0.08	] : 0.06	2 : 0.04	3 : 0.04	4 : 0.04	h : 0.02	a : 0.02	
e : 0.16	= : 0.12	d : 0.10	b : 0.10	c : 0.08	g : 0.08	4 : 0.08	] : 0.08	f : 0.06	3 : 0.04	h : 0.02	2 : 0.02	a : 0.02	
b : 0.16	e : 0.14	= : 0.12	d : 0.10	g : 0.08	] : 0.08	f : 0.08	2 : 0.06	4 : 0.06	3 : 0.04	c : 0.02	h : 0.02	
e : 0.18	= : 0.12	b : 0.12	d : 0.10	2 : 0.08	4 : 0.08	f : 0.08	g : 0.06	c : 0.04	3 : 0.04	h : 0.02	a : 0.02	] : 0.02	
= : 0.12	d : 0.12	f : 0.12	e : 0.12	] : 0.10	2 : 0.08	c : 0.08	4 : 0.06	a : 0.04	g : 0.04	3 : 0.04	h : 0.02	b : 0.02	
d : 0.18	e : 0.14	c : 0.14	= : 0.12	3 : 0.08	] : 0.06	f : 0.06	b : 0.04	g : 0.04	2 : 0.04	h : 0.02	4 : 0.02	a : 0.02	
d : 0.20	c : 0.18	e : 0.14	] : 0.10	3 : 0.08	= : 0.06	b : 0.06	f : 0.06	h : 0.02	a : 0.02	4 : 0.02	2 : 0.02	
d : 0.22	c : 0.16	e : 0.14	3 : 0.12	b : 0.10	= : 0.06	f : 0.06	2 : 0.06	h : 0.02	4 : 0.02	
d : 0.18	] : 0.16	c : 0.10	2 : 0.10	e : 0.08	b : 0.08	= : 0.06	3 : 0.06	f : 0.04	a : 0.04	4 : 0.02	> : 0.02	5 : 0.02	

#score	529.9200103456793
#seq	48
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF917NGY_TRA2A_UTR_m2_run1.txt

#BEAR
ggghhhhhhhh[bboooooobb]hhhhhhhh:	chr16:4909765-4910071(+)$1	306	84	116	11.8442
eeeee[===========lll===========2	chr21:34931863-34932180(+)$1	317	218	250	11.8276
[ccc[ccc####bboooooobb4444cccccc	chr21:40717000-40717266(-)$1	266	161	193	15.2148
###ccc[ffffffooooooffffffccc22ee	chr7:23561862-23562145(-)$1	283	236	268	11.4457
ggggggg[bb[cccooooooccc]bb22gggg	chr8:117861105-117861339(-)$1	234	153	185	13.5138
cceeeee[ffffffooooooffffffeeeeef	chr2:219134027-219134360(-)$1	333	243	275	11.9466
gggggg[bb"""cccnnnnnccc22bbggggg	chr17:48829447-48829695(+)$1	248	98	130	10.5395
c[dddd[gggggggooooooggggggg333dd	chr1:27105560-27105826(+)$1	266	54	86	13.9801
iiiii[ccc"""bboooooobb333ccciiii	chr16:11931823-11932069(-)$1	246	179	211	16.1572
%eeeee==========mmmm==========]e	chr14:35548107-35548331(+)$1	224	108	140	10.6525
g!!ccc####ddddoooooodddd333ccc22	chr17:62498226-62498442(-)$1	216	23	55	12.9191
eeee####bb!!bboooooobb22bbeeeee]	chr9:117044465-117044710(+)$1	245	146	178	13.6605
!gggggggccc!!ammmma22ccc]ggggggg	chr2:47387783-47388044(-)$1	261	134	166	10.1363
b[============oooooo============	chr20:17581329-17581679(+)$1	350	155	187	15.8163
ffffff[ccc!!bboooooobbcccffffff2	chr15:69072646-69072911(-)$1	265	148	180	14.1232
ff[a####bb[cccnnnnnccc]bba]fffff	chr7:23561629-23561878(-)$1	249	117	149	9.3714
ccc####dddd[cccmmmmccc]dddd333cc	chr2:27592182-27592454(-)$1	272	168	200	9.7984
CCggggggg!!cccooooooccc333gggggg	chr16:8998193-8998466(-)$1	273	61	93	12.9053
"ffffff!!cccbboooooobb]ccc333fff	chr17:66511434-66511684(+)$1	250	153	185	14.7900
"ggggggg[dddd[aooooooa]dddd]gggg	chr5:179153580-179153802(+)$1	222	178	210	13.3401
iiiiiiii[ggggggglllggggggg22iiii	chr14:56103815-56104074(+)$1	259	73	105	10.4345
[dddd[ffffffbboooooobb]ffffff]dd	chr12:76443434-76443666(-)$1	232	86	118	13.4839
ee[ccc[dddd"""annnnna333ddddccc]	chr17:16029295-16029630(-)$1	335	293	325	10.4849
!============qqqqqqqq===========	chr3:40503027-40503252(+)$1	225	31	63	10.0932
:cccdddd"""cccooooooccc]dddd]ccc	chr2:232577075-232577323(+)$1	248	171	203	12.0628
ccffffff!!ddddoooooodddd22ffffff	chr17:56083062-56083352(-)$1	290	202	234	11.3958
ddd!!a!!ffffffooooooffffff22a444	chr3:73114124-73114399(+)$1	275	171	203	12.4734
hhhh[ddddddddaooooooa]dddd]dddd]	chr14:21679575-21679827(-)$1	252	84	116	10.8672
ccc:ggggggg[bboooooobb333ggggggg	chr3:196666148-196666427(-)$1	279	196	228	15.3430
iiii####gggggggnnnnnggggggg22iii	chr3:142735065-142735318(+)$1	253	46	78	10.8743
((((ggggggg[bboooooobb]ggggggg99	chr9:86593003-86593293(-)$1	290	199	231	12.3325
c####ccc!!a[bboooooobb]a22ccc444	chr17:44248110-44248399(-)$1	289	129	161	15.4579
hhhheeeee"""cccooooooccc22eeeee:	chr6:30545498-30545788(+)$1	290	251	283	10.6825
bbbb[gggggggbboooooobb]ggggggg]b	chr2:232577123-232577326(+)$1	203	13	45	14.6491
!eeeee[ccc!!bboooooobb]ccceeeee]	chr14:102549269-102549514(-)$1	245	7	39	15.4469
"""ccc[ffffffbbnnnnnbb]ffffff22c	chr1:156259951-156260245(-)$1	294	7	39	10.7997
fffffiiiiiiiiiooooooiiiiiiiii666	chr1:46072049-46072331(+)$1	282	87	119	12.9588
============bboooooobb4444======	chr12:69229565-69229883(+)$1	318	94	126	16.5267
"ggggggg[dddd[aooooooa]dddd]gggg	chr5:179153602-179153861(+)$1	259	156	188	13.3401
###eeeee[eeeeeooooooeeeee]eeeee4	chr1:1325738-1326027(-)$1	289	52	84	12.0014
ffccc!!eeeee[bbnnnnnbb]eeeee]ccc	chr2:232576555-232576782(+)$1	227	122	154	10.2946
##iiiiiiiii[bblllbb]iiiiiiiii22e	chr9:139734670-139734893(+)$1	223	19	51	10.9163
!!dddd[dddd[bboooooobbdddd22dddd	chr16:69687038-69687300(+)$1	262	85	117	13.2101
ccc####gggggggoooooogggggggcccee	chr17:62498464-62498719(-)$1	255	40	72	13.9811
!!cccffffff[bboooooobb]ffffff333	chr7:156961641-156961877(+)$1	236	80	112	15.2528
####eeeee"""bboooooobb333eeeee33	chr5:154172211-154172459(+)$1	248	173	205	15.5784
!eeeee[dddd[bboooooobb]dddd333ee	chr5:33445329-33445619(+)$1	290	179	211	14.8828
d"""ggggggg[cccmmmmccc]gggggggdd	chr18:55282945-55283207(-)$1	262	182	214	10.6750

#otherMatches

#Seq PSSM
UGUCUUUAAUUCUCAGAAGCGGAAGUUGAAGG	chr16:4909765-4910071(+)$1	306	84	116	11.8442
GUAAGUAGGAGGAAUAUUAUGUAUUUUUCCUU	chr21:34931863-34932180(+)$1	317	218	250	11.8276
ACCUGCGGAAAACGGGGAAACGAAGACUGAGG	chr21:40717000-40717266(-)$1	266	161	193	15.2148
AGAAGCACUUGAAUAUUUUUUUAAGGCUAUUU	chr7:23561862-23562145(-)$1	283	236	268	11.4457
AGGUAUUGCCGCUGUUGUCUCAGAGGAAAAUG	chr8:117861105-117861339(-)$1	234	153	185	13.5138
GCAUUGCACUCAGGUAGGUCUUUGAGGCGAUC	chr2:219134027-219134360(-)$1	333	243	275	11.9466
AAUUUUGCGUUGUAGGACUACUGUUCGAAGAU	chr17:48829447-48829695(+)$1	248	98	130	10.5395
AACGCUACUGGAUCCUGGGAGGUUCAGCAAGG	chr1:27105560-27105826(+)$1	266	54	86	13.9801
uuugccagcaucugagaccccaaaagcugcag	chr16:11931823-11932069(-)$1	246	179	211	16.1572
CGGAUGAAGAAGGAGGUAUGCCUCCUUUUUAC	chr14:35548107-35548331(+)$1	224	108	140	10.6525
UGUGACCAAAAGUGGUCAAGCACUGGAGUCUG	chr17:62498226-62498442(-)$1	216	23	55	12.9191
UAGGUGUCCCCUUCUGACUUGAUAGGCCUGCG	chr9:117044465-117044710(+)$1	245	146	178	13.6605
CUUGUACAGAAUGUGUUAAAUUUCUUGUACAA	chr2:47387783-47388044(-)$1	261	134	166	10.1363
GUCAUUUUUUGUCUCAGUGCAGACAAAAAGUG	chr20:17581329-17581679(+)$1	350	155	187	15.8163
AAGAAGAGCUUGGUGGUAUGGCAGCCUUUUUA	chr15:69072646-69072911(-)$1	265	148	180	14.1232
AUGGGUCCUAGGUUAAGUAAAUGUAUGGUUUA	chr7:23561629-23561878(-)$1	249	117	149	9.3714
GUCAAGGUGAGUGAGGGGUCUCUUUUAAAGGG	chr2:27592182-27592454(-)$1	272	168	200	9.7984
GUCACCGACCAUGAUAUUCCUCAGCAGUUGGU	chr16:8998193-8998466(-)$1	273	61	93	12.9053
AGAAUGUGAGCUCUACGUCCAGAAGCAUAACA	chr17:66511434-66511684(+)$1	250	153	185	14.7900
AGGUAAAGGAAAGGGGUCACACAUUUUGUUUU	chr5:179153580-179153802(+)$1	222	178	210	13.3401
UCUGUAAAAUGUAAUGUUUUAUUACAGAUUUA	chr14:56103815-56104074(+)$1	259	73	105	10.4345
GUUUUUCCUUUUCAGUAUGAUGAAGAAGGUGA	chr12:76443434-76443666(-)$1	232	86	118	13.4839
uuuuguagauauagggaguacaguugucacau	chr17:16029295-16029630(-)$1	335	293	325	10.4849
UGAGAGGGAUAAUUUUUAUUUGUUGUUUUUUU	chr3:40503027-40503252(+)$1	225	31	63	10.0932
AAGGGGGGUUUGGCAUCUGGGUCUCCCCACCU	chr2:232577075-232577323(+)$1	248	171	203	12.0628
ACGUAUUCUUUUCUUUGACCAGAAUUGGAUAC	chr17:56083062-56083352(-)$1	290	202	234	11.3958
UUUAGAGACCAUCUGUAAAAGGGUGGAGUAAG	chr3:73114124-73114399(+)$1	275	171	203	12.4734
UGUCCUUCUCAUCCGCAGUAGAGAUGAAGAAU	chr14:21679575-21679827(-)$1	252	84	116	10.8672
ACAACUGAAGAACAAAUCUAUGAACUCUUCAG	chr3:196666148-196666427(-)$1	279	196	228	15.3430
CAGCUGCUGAGAUUUAUGAGGAGUUUCUUGCU	chr3:142735065-142735318(+)$1	253	46	78	10.8743
AGUUUUAACAGUAUUUUUUUAUCCUGUUAAUA	chr9:86593003-86593293(-)$1	290	199	231	12.3325
GAAGAGGAAGAACUGACCAGAGCUGAUCCCGA	chr17:44248110-44248399(-)$1	289	129	161	15.4579
CCAGCCCAUGUUGCUCCAUUCAGCUGAUGGGG	chr6:30545498-30545788(+)$1	290	251	283	10.6825
CUUUGAUUCUCUCCAGGUGAGGAAGAGGAUGG	chr2:232577123-232577326(+)$1	203	13	45	14.6491
CUUUAGUGUCAGUCACCAAAGAAGGCCuggaa	chr14:102549269-102549514(-)$1	245	7	39	15.4469
aaagugccuuggccucccaaagugcugagauu	chr1:156259951-156260245(-)$1	294	7	39	10.7997
UUCUUUUGUUCUCCUAGAAUGGAGAAUGGUGU	chr1:46072049-46072331(+)$1	282	87	119	12.9588
UCAGUUUCAGAUCAGUUUAGUGUAGAAUUUGA	chr12:69229565-69229883(+)$1	318	94	126	16.5267
AGGUAAAGGAAAGGGGUCACACAUUUUGUUUU	chr5:179153602-179153861(+)$1	259	156	188	13.3401
AAGUGUAAUGAUGAUAGUGUUUGUUUUUACAG	chr1:1325738-1326027(-)$1	289	52	84	12.0014
gaagaagaagGUGAUGGUGAGUAGCCUUGUCU	chr2:232576555-232576782(+)$1	227	122	154	10.2946
GGCCAGGACUGGGUGGCAUGCGGUCCUGGGAC	chr9:139734670-139734893(+)$1	223	19	51	10.9163
GCUUUGAUUUCUCAGAACAUUGGAAAACCAAA	chr16:69687038-69687300(+)$1	262	85	117	13.2101
UCCUAUUAUUAGACUUAUUCGUCUAAUGGAAG	chr17:62498464-62498719(-)$1	255	40	72	13.9811
CUCCUCCUUUUAUUGUUUAGGAAGAAAGGCGA	chr7:156961641-156961877(+)$1	236	80	112	15.2528
AAGGUGGCAGGGUAGAACUGUGAAAUGUCAGG	chr5:154172211-154172459(+)$1	248	173	205	15.5784
AGGUAAAAGUUAUCAUCACAGAGGGCUCUGUU	chr5:33445329-33445619(+)$1	290	179	211	14.8828
GAACGUUGUUAAAGUUAGAACUCUGGCAACCA	chr18:55282945-55283207(-)$1	262	182	214	10.6750

#DB
)))((((((((.((......)).)))))))).	chr16:4909765-4910071(+)$1	1	84	116	11.8442
(((((.(((((((((((...))))))))))).	chr21:34931863-34932180(+)$1	1	218	250	11.8276
.(((.(((....((......))....))))))	chr21:40717000-40717266(-)$1	1	161	193	15.2148
...(((.((((((......)))))))))..))	chr7:23561862-23562145(-)$1	1	236	268	11.4457
(((((((.((.(((......))).))..))))	chr8:117861105-117861339(-)$1	1	153	185	13.5138
))(((((.((((((......)))))))))))(	chr2:219134027-219134360(-)$1	1	243	275	11.9466
((((((.((...(((.....)))..)))))))	chr17:48829447-48829695(+)$1	1	98	130	10.5395
(.((((.(((((((......)))))))...))	chr1:27105560-27105826(+)$1	1	54	86	13.9801
(((((.(((...((......))...)))))))	chr16:11931823-11932069(-)$1	1	179	211	16.1572
.(((((((((((((((....)))))))))).)	chr14:35548107-35548331(+)$1	1	108	140	10.6525
(..(((....((((......))))...)))..	chr17:62498226-62498442(-)$1	1	23	55	12.9191
((((....((..((......))..))))))).	chr9:117044465-117044710(+)$1	1	146	178	13.6605
.((((((((((..(....)..))).)))))))	chr2:47387783-47388044(-)$1	1	134	166	10.1363
(.((((((((((((......))))))))))))	chr20:17581329-17581679(+)$1	1	155	187	15.8163
((((((.(((..((......))))))))))).	chr15:69072646-69072911(-)$1	1	148	180	14.1232
((.(....((.(((.....))).))).)))))	chr7:23561629-23561878(-)$1	1	117	149	9.3714
(((....((((.(((....))).))))...))	chr2:27592182-27592454(-)$1	1	168	200	9.7984
(((((((((..(((......)))...))))))	chr16:8998193-8998466(-)$1	1	61	93	12.9053
.((((((..(((((......)).)))...)))	chr17:66511434-66511684(+)$1	1	153	185	14.7900
.(((((((.((((.(......).)))).))))	chr5:179153580-179153802(+)$1	1	178	210	13.3401
((((((((.(((((((...)))))))..))))	chr14:56103815-56104074(+)$1	1	73	105	10.4345
.((((.((((((((......)).)))))).))	chr12:76443434-76443666(-)$1	1	86	118	13.4839
((.(((.((((...(.....)...))))))).	chr17:16029295-16029630(-)$1	1	293	325	10.4849
.((((((((((((........)))))))))))	chr3:40503027-40503252(+)$1	1	31	63	10.0932
.(((((((...(((......))).)))).)))	chr2:232577075-232577323(+)$1	1	171	203	12.0628
((((((((..((((......))))..))))))	chr17:56083062-56083352(-)$1	1	202	234	11.3958
(((..(..((((((......))))))..)...	chr3:73114124-73114399(+)$1	1	171	203	12.4734
((((.(((((((((......).)))).)))).	chr14:21679575-21679827(-)$1	1	84	116	10.8672
))).(((((((.((......))...)))))))	chr3:196666148-196666427(-)$1	1	196	228	15.3430
((((....(((((((.....)))))))..)))	chr3:142735065-142735318(+)$1	1	46	78	10.8743
....(((((((.((......)).)))))))..	chr9:86593003-86593293(-)$1	1	199	231	12.3325
(....(((..(.((......)).)..)))...	chr17:44248110-44248399(-)$1	1	129	161	15.4579
))))(((((...(((......)))..))))).	chr6:30545498-30545788(+)$1	1	251	283	10.6825
((((.(((((((((......)).))))))).)	chr2:232577123-232577326(+)$1	1	13	45	14.6491
.(((((.(((..((......)).)))))))).	chr14:102549269-102549514(-)$1	1	7	39	15.4469
...(((.((((((((.....)).))))))..)	chr1:156259951-156260245(-)$1	1	7	39	10.7997
((((((((((((((......)))))))))...	chr1:46072049-46072331(+)$1	1	87	119	12.9588
((((((((((((((......))....))))))	chr12:69229565-69229883(+)$1	1	94	126	16.5267
.(((((((.((((.(......).)))).))))	chr5:179153602-179153861(+)$1	1	156	188	13.3401
...(((((.(((((......))))).))))).	chr1:1325738-1326027(-)$1	1	52	84	12.0014
(((((..(((((.((.....)).))))).)))	chr2:232576555-232576782(+)$1	1	122	154	10.2946
..(((((((((.((...)).)))))))))..)	chr9:139734670-139734893(+)$1	1	19	51	10.9163
..((((.((((.((......))))))..))))	chr16:69687038-69687300(+)$1	1	85	117	13.2101
(((....(((((((......))))))))))))	chr17:62498464-62498719(-)$1	1	40	72	13.9811
..(((((((((.((......)).))))))...	chr7:156961641-156961877(+)$1	1	80	112	15.2528
....(((((...((......))...)))))..	chr5:154172211-154172459(+)$1	1	173	205	15.5784
.(((((.((((.((......)).))))...))	chr5:33445329-33445619(+)$1	1	179	211	14.8828
(...(((((((.(((....))).)))))))))	chr18:55282945-55283207(-)$1	1	182	214	10.6750

#PSSM
c : 0.14	! : 0.12	g : 0.08	# : 0.08	f : 0.08	" : 0.08	e : 0.06	i : 0.06	[ : 0.04	b : 0.04	d : 0.04	h : 0.04	% : 0.02	C : 0.02	: : 0.02	( : 0.02	= : 0.02	
c : 0.14	g : 0.12	e : 0.12	# : 0.10	f : 0.10	i : 0.06	! : 0.06	[ : 0.04	d : 0.04	= : 0.04	h : 0.04	" : 0.04	C : 0.02	( : 0.02	b : 0.02	
g : 0.14	c : 0.14	e : 0.12	# : 0.08	d : 0.08	i : 0.08	f : 0.08	= : 0.06	[ : 0.04	h : 0.04	" : 0.04	! : 0.02	( : 0.02	b : 0.02	
c : 0.16	e : 0.14	g : 0.12	i : 0.08	f : 0.08	# : 0.08	h : 0.06	d : 0.06	= : 0.06	a : 0.02	! : 0.02	: : 0.02	( : 0.02	b : 0.02	" : 0.02	
g : 0.18	e : 0.16	c : 0.12	# : 0.12	d : 0.08	f : 0.08	[ : 0.06	i : 0.06	= : 0.06	h : 0.02	! : 0.02	
g : 0.20	e : 0.14	c : 0.12	# : 0.10	d : 0.08	f : 0.08	[ : 0.06	= : 0.06	i : 0.06	h : 0.02	a : 0.02	! : 0.02	
[ : 0.18	g : 0.18	# : 0.12	= : 0.10	e : 0.08	f : 0.08	c : 0.06	i : 0.06	d : 0.04	! : 0.04	h : 0.02	
g : 0.20	d : 0.12	= : 0.10	c : 0.10	f : 0.10	# : 0.08	e : 0.08	i : 0.06	[ : 0.04	! : 0.04	h : 0.02	b : 0.02	
g : 0.16	f : 0.12	= : 0.10	d : 0.10	b : 0.08	c : 0.08	[ : 0.08	! : 0.06	e : 0.06	# : 0.04	i : 0.04	h : 0.02	" : 0.02	
g : 0.16	d : 0.14	f : 0.12	= : 0.10	" : 0.10	c : 0.08	b : 0.06	! : 0.06	# : 0.04	i : 0.04	e : 0.04	h : 0.02	
d : 0.18	g : 0.16	f : 0.12	= : 0.10	" : 0.10	! : 0.08	[ : 0.04	c : 0.04	i : 0.04	e : 0.04	h : 0.02	# : 0.02	a : 0.02	
[ : 0.20	= : 0.10	f : 0.10	c : 0.10	" : 0.10	g : 0.10	d : 0.10	! : 0.08	e : 0.04	# : 0.02	i : 0.02	
b : 0.37	c : 0.16	d : 0.10	= : 0.08	f : 0.08	g : 0.08	! : 0.02	" : 0.02	i : 0.02	e : 0.02	[ : 0.02	
b : 0.41	c : 0.16	g : 0.08	= : 0.06	f : 0.04	d : 0.04	a : 0.04	[ : 0.04	o : 0.02	" : 0.02	q : 0.02	i : 0.02	e : 0.02	
o : 0.64	c : 0.08	a : 0.06	= : 0.04	g : 0.04	b : 0.04	m : 0.02	n : 0.02	q : 0.02	l : 0.02	
o : 0.70	n : 0.12	m : 0.06	= : 0.04	g : 0.02	q : 0.02	l : 0.02	
o : 0.70	n : 0.12	m : 0.08	l : 0.04	= : 0.02	q : 0.02	
o : 0.70	n : 0.12	m : 0.08	l : 0.04	q : 0.02	b : 0.02	
o : 0.70	n : 0.12	m : 0.06	l : 0.04	a : 0.02	q : 0.02	b : 0.02	
o : 0.68	n : 0.10	c : 0.06	l : 0.02	f : 0.02	m : 0.02	2 : 0.02	g : 0.02	q : 0.02	] : 0.02	
b : 0.39	c : 0.14	g : 0.08	= : 0.06	f : 0.06	o : 0.06	d : 0.04	a : 0.04	i : 0.04	2 : 0.02	q : 0.02	e : 0.02	
b : 0.39	c : 0.18	= : 0.08	g : 0.08	f : 0.06	d : 0.04	a : 0.04	i : 0.04	3 : 0.02	] : 0.02	e : 0.02	
] : 0.33	c : 0.14	= : 0.08	g : 0.08	3 : 0.08	d : 0.08	f : 0.06	4 : 0.04	i : 0.04	2 : 0.02	e : 0.02	
d : 0.16	g : 0.14	f : 0.12	3 : 0.10	c : 0.10	= : 0.08	4 : 0.04	] : 0.04	2 : 0.04	i : 0.04	e : 0.04	h : 0.02	b : 0.02	a : 0.02	
d : 0.16	g : 0.14	f : 0.12	3 : 0.10	= : 0.08	2 : 0.08	b : 0.06	c : 0.06	4 : 0.04	i : 0.04	e : 0.04	h : 0.02	] : 0.02	
g : 0.18	d : 0.16	f : 0.12	= : 0.08	c : 0.08	b : 0.06	2 : 0.06	4 : 0.04	3 : 0.04	i : 0.04	e : 0.04	h : 0.02	a : 0.02	] : 0.02	
g : 0.18	e : 0.14	d : 0.12	= : 0.10	f : 0.10	c : 0.08	2 : 0.08	3 : 0.04	] : 0.04	i : 0.04	h : 0.02	b : 0.02	
e : 0.14	g : 0.14	c : 0.12	f : 0.12	= : 0.10	2 : 0.10	3 : 0.08	d : 0.06	] : 0.04	i : 0.04	h : 0.02	
g : 0.20	e : 0.12	f : 0.12	= : 0.10	c : 0.10	3 : 0.08	i : 0.08	2 : 0.04	] : 0.04	d : 0.04	h : 0.02	a : 0.02	
g : 0.20	c : 0.12	e : 0.12	= : 0.10	3 : 0.08	f : 0.08	2 : 0.06	i : 0.06	4 : 0.04	d : 0.04	h : 0.02	] : 0.02	6 : 0.02	
e : 0.16	g : 0.14	c : 0.10	d : 0.10	= : 0.08	f : 0.08	i : 0.06	2 : 0.06	] : 0.04	4 : 0.04	3 : 0.04	h : 0.02	9 : 0.02	6 : 0.02	
g : 0.14	c : 0.10	e : 0.10	f : 0.08	d : 0.08	] : 0.08	2 : 0.06	i : 0.06	= : 0.06	4 : 0.06	: : 0.04	3 : 0.04	9 : 0.02	b : 0.02	6 : 0.02	

#score	610.484774835208
#seq	48
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF982RHC_RBM15_transcript_m1_run2.txt

#BEAR
========="""bb[bblllbb]bb==========	chr2:27566276-27566487(-)$1	211	79	114	13.0627
ccc[ffffff"""bboooooobb333ffffff22c	chr20:43058426-43058713(+)$1	287	24	59	14.0604
!!ccc!!bb"""cccmmmmcccbb22ccc22a]ff	chr14:23450805-23451027(-)$1	222	20	55	12.3398
g[ccc[bb!!eeeeennnnneeeeebb]cccgggg	chr21:34923312-34923541(+)$1	229	48	83	12.4205
ggggggg!!ccccccnnnnnccc]ccc22gggggg	chr16:11785288-11785538(-)$1	250	44	79	14.6880
$$$$bb[bb"""cccnnnnnccc4444bb]bb333	chr19:893455-893659(+)$1	204	77	112	14.9292
ccc[ccc$$$$$cccnnnnnccc4444cccccc::	chr6:11213570-11213826(-)$1	256	147	182	15.1200
dddcccccc####bbnnnnnbb333ccc]ccc]dd	chr1:8418342-8418601(-)$1	259	159	194	17.1588
ff"""ggggggg[bbnnnnnbb]gggggggfffff	chr9:139301632-139301874(-)$1	242	203	238	12.9241
[ccc[a[ccc[ddddnnnnndddd]ccc333a]cc	chrX:49126679-49126939(+)$1	260	14	49	13.9373
g[ccc[bb!!eeeeennnnneeeeebb]cccgggg	chr21:34923257-34923493(+)$1	236	103	138	12.4205
iiiiiiiccc"""bbnnnnnbb4444ccc]iiiii	chr17:18167522-18167799(+)$1	277	64	99	18.0838
dddd!!ccc[eeeeennnnneeeee]ccc]dddd]	chr6:7577168-7577373(+)$1	205	120	155	12.0729
cc"""bb!!ccccccnnnnnccc]ccc]bb333cc	chr1:61554296-61554554(+)$1	258	119	154	14.2191
======="""bb[bblllbbbb4444=========	chr1:156354728-156354989(+)$1	261	34	69	14.0924
:ffffff[a"""cccnnnnnccc333a]ffffff:	chr4:152095778-152096038(-)$1	260	64	99	14.5019
iiiiiii"""eeeeennnnneeeee]iiiiiiiii	chr16:30544136-30544411(-)$1	275	218	253	14.2012
eeeeccc####cccooooooccc4444ccc333ee	chr1:26189845-26190098(-)$1	253	157	192	15.8123
===========[bboooooobb22===========	chr6:36936292-36936643(-)$1	351	92	127	14.8950
!ccc!!ddddxxxxxxxxxxxxxxxdddd333ccc	chr16:75269821-75270070(-)$1	249	160	195	11.3661
ddd[cccbb"""bboooooobb333bb]ccc]ddd	chr6:1313366-1313605(+)$1	239	202	237	14.6323
ggggggg[a[eeeeennnnneeeee]aggggggg:	chr10:21962177-21962416(+)$1	239	145	180	12.2690
ggggccc[bb[cccooooooccc]bbccc]ggggg	chr15:75503623-75503865(+)$1	242	197	232	13.1953
d[hhhhhhhha[cccnnnnnccc]a]hhhhhhhhd	chr20:58513819-58514100(-)$1	281	191	226	12.1670
ccc[ccc!!ccc[bboooooobb]ccc333ccc]c	chr16:11036093-11036343(-)$1	250	100	135	14.1544
'''ggggggg"""bboooooobb22ggggggg22f	chr1:150551762-150552002(-)$1	240	13	48	12.6491
c"""ccc!!bb[cccnnnnnccc]bbccc22ccc2	chr12:49445088-49445301(-)$1	213	41	76	14.2834
gg"""ccc"""ddddnnnnndddd333ccc333gg	chr3:49049622-49049845(+)$1	223	175	210	16.4578
eeeeedddd[a[bboooooobb22a]ddddccc[a	chr19:5719770-5720046(-)$1	276	163	198	12.3218
eeeeeee####a[bboooooobba22eeeee]eee	chr2:171573378-171573613(+)$1	235	80	115	13.8784
eeeeeee####a[bboooooobba22eeeee]eee	chr2:171573354-171573578(+)$1	224	104	139	13.8784
FFFFeeeee"""cccnnnnnccc333eeeeeFFFF	chr12:12870448-12870716(+)$1	268	87	122	12.4683
hhh!!ccc"""ddddnnnnndddd22ccc333hhh	chr3:5024770-5025007(+)$1	237	9	44	14.9421
ccc[eeeee"""cccnnnnnccceeeee333ccce	chr19:18978118-18978380(+)$1	262	205	240	15.2692
ccc!!dddd$$$$$ccclllccc22dddd]ccc]c	chr9:130551999-130552240(+)$1	241	30	65	12.3350
iiiiiiiii"""cccnnnnnccc333iiiiiiiii	chr19:4652413-4652665(+)$1	252	54	89	18.6725
dd"""dddd"""cccnnnnnccc333dddddddd:	chr8:103663432-103663712(-)$1	280	185	220	15.1839
=========####bboooooobb22==========	chr17:1945862-1946121(+)$1	259	175	210	17.0592
========="""abbmmmmbb]a333=========	chr2:171573839-171574061(+)$1	222	141	176	14.8182
======!!dddd[bboooooobbdddd333=====	chr20:34638194-34638461(-)$1	267	225	260	12.9172
eeeee[ccc"""cccnnnnnccc4444ccc]eeee	chrX:108976342-108976592(-)$1	250	147	182	16.9099
ggg[a[ccc[dddd[bblllbb333dddd]ccc]a	chr2:110373027-110373251(+)$1	224	68	103	11.8021
eccc"""cccxxxxxxxxxxxxxxxccc4444ccc	chr17:3512859-3513121(-)$1	262	27	62	11.9673
ggggggccc####bboooooobb22ccc]gggggg	chr2:44065679-44065933(-)$1	254	40	75	16.1159
!eeeee$$$$$a!!annnnna22a22eeeee22gg	chr8:121823660-121823902(-)$1	242	194	229	13.6209
$$ccc[a####ddddnnnnndddd333accc22dd	chr20:22563893-22564179(-)$1	286	149	184	14.6888
cc[ccc[ccc!!ddddllldddd333ccc]ccc]c	chr14:54417196-54417432(-)$1	236	19	54	13.2847
""ccc!!ccc"""bboooooobb]ccc22ccc444	chr6:11190648-11190879(-)$1	231	86	121	14.4280
ffdddd[ccc!!bboooooobb4444ccc]dddd5	chr22:38061593-38061873(+)$1	280	72	107	13.0828
eeeeeccc####cccnnnnnccc4444ccc]eeee	chr4:3447035-3447261(+)$1	226	138	173	16.8430
eeeeee"""bb[ccclllcccbb333eeeee]eee	chr2:128622227-128622470(-)$1	243	116	151	12.0428
ddccc[dddd!!cccnnnnnccc22ddddcccccc	chr9:116136536-116136821(-)$1	285	213	248	14.8356
b"""dddd[a!!bboooooobb22adddd]bb]gg	chr16:89266311-89266587(-)$1	276	173	208	12.7864
ccggggggg####bbnnnnnbb333ggggggg555	chr6:30711119-30711350(-)$1	231	184	219	15.1243

#otherMatches

#Seq PSSM
GGGUCGGCUAUGUUGCCCUGGGGGAGGCCGGCCCC	chr2:27566276-27566487(-)$1	211	79	114	13.0627
GGCCUAAGGGCCACAUCCCACUGCCACCCUUGACG	chr20:43058426-43058713(+)$1	287	24	59	14.0604
CCCUGCAGCAAUCGCACCAGCGGCAUCAGCAUGGG	chr14:23450805-23451027(-)$1	222	20	55	12.3398
CUCGGGGCAGUCUGGGGCAGCUGGAGCACUGGAGC	chr21:34923312-34923541(+)$1	229	48	83	12.4205
GGCUUCAUCGACUCUGAACAAGGUGUCUUUGAAGC	chr16:11785288-11785538(-)$1	250	44	79	14.6880
auuagcauggccccugcgcaaggaugacacgcaaa	chr19:893455-893659(+)$1	204	77	112	14.9292
GGCUGCUCCCCGAGACACCAUCUACCAAGUGCCAC	chr6:11213570-11213826(-)$1	256	147	182	15.1200
CAGCUGCGGCCCGAGAUGAGCUACCCUGACAGACU	chr1:8418342-8418601(-)$1	259	159	194	17.1588
AGCGCAGACUUUGCGGUUCAUGGAGAGUCUCUGGG	chr9:139301632-139301874(-)$1	242	203	238	12.9241
UGCCGCCCGCGCCGGGCCGUCUGGAGCGCUUGGGG	chrX:49126679-49126939(+)$1	260	14	49	13.9373
CUCGGGGCAGUCUGGGGCAGCUGGAGCACUGGAGC	chr21:34923257-34923493(+)$1	236	103	138	12.4205
GUGCAGCACGAACGCCUGGAGCUCACUGUGGCUGU	chr17:18167522-18167799(+)$1	277	64	99	18.0838
AUAAAGAAUGUUGGUAUUUCACCAAGAUUAUUAUU	chr6:7577168-7577373(+)$1	205	120	155	12.0729
CGUUAUGCCGGAUUCUUCCUGAGCUCCCCAAGUUG	chr1:61554296-61554554(+)$1	258	119	154	14.2191
CCUUUCCACAGGCAGCGUCUCCACAGGGAGAGGGG	chr1:156354728-156354989(+)$1	261	34	69	14.0924
CACUGGGAGAAGGGCCCCCAGCCAACCCCCCAGUU	chr4:152095778-152096038(-)$1	260	64	99	14.5019
AGCCCUUCCACUGCGCAGACUGCGGCAAGGGCUUC	chr16:30544136-30544411(-)$1	275	218	253	14.2012
GUCUGAGUUCUGGCAUUACAGCUUCUUCUUCCUGG	chr1:26189845-26190098(-)$1	253	157	192	15.8123
UUCCAUAUUUGCCAUGUGUCUGUCCAGAUGUGGGG	chr6:36936292-36936643(-)$1	351	92	127	14.8950
AGUCUUGACCACCGCUUGUCCCCCAGGUCUACGAC	chr16:75269821-75270070(-)$1	249	160	195	11.3661
CCGCCGCCGCAAGCGCCUCAGCCAccgcgcgccgg	chr6:1313366-1313605(+)$1	239	202	237	14.6323
AGUUCAGUGCAGUCUCCCCAGGAUUUCCUGAGCUU	chr10:21962177-21962416(+)$1	239	145	180	12.2690
ggguuguuguggggauGCUGCCUGAUACAUACCCU	chr15:75503623-75503865(+)$1	242	197	232	13.1953
GAGUCACUUGGUCUAAAAAGUAGCCUCAGGUGGCC	chr20:58513819-58514100(-)$1	281	191	226	12.1670
GGGGCGGGGCGGGAGAGAAGGCUGCCGGGACCGGC	chr16:11036093-11036343(-)$1	250	100	135	14.1544
AAACGCGGUAAUCGGACUCAACCUCUACUGUGGGG	chr1:150551762-150552002(-)$1	240	13	48	12.6491
CCCCGGUCCGAGGGGCCGCACCUGUCACCCCGGCC	chr12:49445088-49445301(-)$1	213	41	76	14.2834
UUGUGUCUGCUUGGUGUGGAGCCAUGAAGGUGAGA	chr3:49049622-49049845(+)$1	223	175	210	16.4578
GGGCGGCGCGGAGGAAGGAgccggcggcgcggggg	chr19:5719770-5720046(-)$1	276	163	198	12.3218
GCGCAGUACCAGAGCCAGAUCGCCGCGCUGCUGCA	chr2:171573378-171573613(+)$1	235	80	115	13.8784
GCGCAGUACCAGAGCCAGAUCGCCGCGCUGCUGCA	chr2:171573354-171573578(+)$1	224	104	139	13.8784
CCUCCCGCUCGCCAGUCCAUUUGAUCAGCGGAGAC	chr12:12870448-12870716(+)$1	268	87	122	12.4683
UCCUGGGAAAAACUGCGUGCCAGUCAUCCAGCGGA	chr3:5024770-5025007(+)$1	237	9	44	14.9421
GGAAGGACAAGAGGGCCUGUCCCUGUCCCCGUCCC	chr19:18978118-18978380(+)$1	262	205	240	15.2692
UUUUCUGGAUGGUUCCCAGAGGGUUUCCAUGGGGU	chr9:130551999-130552240(+)$1	241	30	65	12.3350
CUCGCGCCUUUUGGGGCUCUCCUGCUGGGCGCGGG	chr19:4652413-4652665(+)$1	252	54	89	18.6725
GCCCCUGCUCCUGGGUUUUCCCCUUCAGCAGCAAA	chr8:103663432-103663712(-)$1	280	185	220	15.1839
GCUGGGGCCUUUUGACGGCCUUCUUGGUUUCAGCC	chr17:1945862-1946121(+)$1	259	175	210	17.0592
GCGGAGGGGAGACUCAGCAGACGGACCCUCUCCGU	chr2:171573839-171574061(+)$1	222	141	176	14.8182
CUACCAGACUUUGCUGUCGGAAGAGAGAAAUGGUA	chr20:34638194-34638461(-)$1	267	225	260	12.9172
GGCACGCGGUUCCUUUUUGCGAGCUUUCCGAGUGC	chrX:108976342-108976592(-)$1	250	147	182	16.9099
GCCCUGCACUUGGCAGCCAUGCACGGCCACGUGGA	chr2:110373027-110373251(+)$1	224	68	103	11.8021
GUGCAGCUCACACCACUCCAGAACCUGACAAGGCA	chr17:3512859-3513121(-)$1	262	27	62	11.9673
GGGCUCCCCAACUGAAGCCACUCUGGGGAGGGUCC	chr2:44065679-44065933(-)$1	254	40	75	16.1159
AGCAUCAAGGGGGGCAAGGAGAACAAGAUGCCCAU	chr8:121823660-121823902(-)$1	242	194	229	13.6209
GGGCUAGGAACGGGCCACAUGCCCAAGCAGCAAUC	chr20:22563893-22564179(-)$1	286	149	184	14.6888
AGAAGUGGUGCCUGGGCACCUCAUCACACGACUAC	chr14:54417196-54417432(-)$1	236	19	54	13.2847
UGUUACGGAUAUAUGGAAAGACACAUCAAUGAAAU	chr6:11190648-11190879(-)$1	231	86	121	14.4280
AGCAUCGACCCCGCACGCACGCUUAUGGUGGGUGA	chr22:38061593-38061873(+)$1	280	72	107	13.0828
AUCucugacaaauggggaaacuggagcucacggga	chr4:3447035-3447261(+)$1	226	138	173	16.8430
UAUUGGCCACACGCUGGAAGCUGAAAUUGAUGAUC	chr2:128622227-128622470(-)$1	243	116	151	12.0428
GCUGACGUGGGAUGUGAAGGACACGCUGCUCAGGC	chr9:116136536-116136821(-)$1	285	213	248	14.8356
GAGACCAGAGAGGCUgcugugugaccuggaccaag	chr16:89266311-89266587(-)$1	276	173	208	12.7864
CCGUCUGUCUACUGUGUGAGACUUCGGCGGACCAU	chr6:30711119-30711350(-)$1	231	184	219	15.1243

#DB
(((((((((...((.((...)).))))))))))))	chr2:27566276-27566487(-)$1	1	79	114	13.0627
(((.((((((...((......))...))))))..)	chr20:43058426-43058713(+)$1	1	24	59	14.0604
..(((..((...(((....)))))..)))..).))	chr14:23450805-23451027(-)$1	1	20	55	12.3398
(.(((.((..(((((.....))))))).)))))))	chr21:34923312-34923541(+)$1	1	48	83	12.4205
(((((((..((((((.....))).)))..))))))	chr16:11785288-11785538(-)$1	1	44	79	14.6880
....((.((...(((.....)))....)).))...	chr19:893455-893659(+)$1	1	77	112	14.9292
(((.(((.....(((.....)))....))))))..	chr6:11213570-11213826(-)$1	1	147	182	15.1200
(((((((((....((.....))...))).))).))	chr1:8418342-8418601(-)$1	1	159	194	17.1588
((...(((((((.((.....)).))))))))))))	chr9:139301632-139301874(-)$1	1	203	238	12.9241
.(((.(.(((.((((.....)))).)))...).))	chrX:49126679-49126939(+)$1	1	14	49	13.9373
(.(((.((..(((((.....))))))).)))))))	chr21:34923257-34923493(+)$1	1	103	138	12.4205
((((((((((...((.....))....))).)))))	chr17:18167522-18167799(+)$1	1	64	99	18.0838
((((..(((.(((((.....))))).))).)))).	chr6:7577168-7577373(+)$1	1	120	155	12.0729
((...((..((((((.....))).))).))...))	chr1:61554296-61554554(+)$1	1	119	154	14.2191
(((((((...((.((...))))....)))))))))	chr1:156354728-156354989(+)$1	1	34	69	14.0924
.((((((.(...(((.....)))...).)))))).	chr4:152095778-152096038(-)$1	1	64	99	14.5019
(((((((...(((((.....))))).)))))))))	chr16:30544136-30544411(-)$1	1	218	253	14.2012
(((((((....(((......)))....)))...))	chr1:26189845-26190098(-)$1	1	157	192	15.8123
(((((((((((.((......))..)))))))))))	chr6:36936292-36936643(-)$1	1	92	127	14.8950
.(((..((((...............))))...)))	chr16:75269821-75270070(-)$1	1	160	195	11.3661
(((.(((((...((......))...)).))).)))	chr6:1313366-1313605(+)$1	1	202	237	14.6323
(((((((.(.(((((.....))))).)))))))).	chr10:21962177-21962416(+)$1	1	145	180	12.2690
(((((((.((.(((......))).))))).)))))	chr15:75503623-75503865(+)$1	1	197	232	13.1953
(.(((((((((.(((.....))).).)))))))))	chr20:58513819-58514100(-)$1	1	191	226	12.1670
(((.(((..(((.((......)).)))...))).)	chr16:11036093-11036343(-)$1	1	100	135	14.1544
...(((((((...((......))..)))))))..)	chr1:150551762-150552002(-)$1	1	13	48	12.6491
(...(((..((.(((.....))).)))))..))).	chr12:49445088-49445301(-)$1	1	41	76	14.2834
((...(((...((((.....))))...)))...))	chr3:49049622-49049845(+)$1	1	175	210	16.4578
)))))((((.(.((......))..).))))(((.(	chr19:5719770-5720046(-)$1	1	163	198	12.3218
(((((((....(.((......)))..))))).)))	chr2:171573378-171573613(+)$1	1	80	115	13.8784
(((((((....(.((......)))..))))).)))	chr2:171573354-171573578(+)$1	1	104	139	13.8784
(((((((((...(((.....)))...)))))((((	chr12:12870448-12870716(+)$1	1	87	122	12.4683
(((..(((...((((.....))))..)))...)))	chr3:5024770-5025007(+)$1	1	9	44	14.9421
(((.(((((...(((.....))))))))...))))	chr19:18978118-18978380(+)$1	1	205	240	15.2692
(((..((((.....(((...)))..)))).))).)	chr9:130551999-130552240(+)$1	1	30	65	12.3350
(((((((((...(((.....)))...)))))))))	chr19:4652413-4652665(+)$1	1	54	89	18.6725
((...((((...(((.....)))...)))))))).	chr8:103663432-103663712(-)$1	1	185	220	15.1839
(((((((((....((......))..))))))))))	chr17:1945862-1946121(+)$1	1	175	210	17.0592
(((((((((...(((....)).)...)))))))))	chr2:171573839-171574061(+)$1	1	141	176	14.8182
((((((..((((.((......))))))...)))))	chr20:34638194-34638461(-)$1	1	225	260	12.9172
(((((.(((...(((.....)))....))).))))	chrX:108976342-108976592(-)$1	1	147	182	16.9099
(((.(.(((.((((.((...))...)))).))).)	chr2:110373027-110373251(+)$1	1	68	103	11.8021
((((...(((...............)))....)))	chr17:3512859-3513121(-)$1	1	27	62	11.9673
(((((((((....((......))..))).))))))	chr2:44065679-44065933(-)$1	1	40	75	16.1159
.(((((.....(..(.....)..)..)))))..))	chr8:121823660-121823902(-)$1	1	194	229	13.6209
..(((.(....((((.....))))...))))..))	chr20:22563893-22564179(-)$1	1	149	184	14.6888
((.(((.(((..((((...))))...))).))).)	chr14:54417196-54417432(-)$1	1	19	54	13.2847
..(((..(((...((......)).)))..)))...	chr6:11190648-11190879(-)$1	1	86	121	14.4280
((((((.(((..((......))....))).)))).	chr22:38061593-38061873(+)$1	1	72	107	13.0828
((((((((....(((.....)))....))).))))	chr4:3447035-3447261(+)$1	1	138	173	16.8430
((((((...((.(((...)))))...))))).)))	chr2:128622227-128622470(-)$1	1	116	151	12.0428
))(((.((((..(((.....)))..)))))))(((	chr9:116136536-116136821(-)$1	1	213	248	14.8356
(...((((.(..((......))..))))).)).))	chr16:89266311-89266587(-)$1	1	173	208	12.7864
(((((((((....((.....))...)))))))...	chr6:30711119-30711350(-)$1	1	184	219	15.1243

#PSSM
c : 0.16	g : 0.14	e : 0.14	= : 0.11	d : 0.11	! : 0.05	i : 0.05	$ : 0.03	f : 0.03	[ : 0.01	: : 0.01	' : 0.01	F : 0.01	h : 0.01	" : 0.01	b : 0.01	
c : 0.20	e : 0.14	= : 0.11	g : 0.11	d : 0.09	[ : 0.05	f : 0.05	i : 0.05	" : 0.05	$ : 0.03	! : 0.01	' : 0.01	F : 0.01	h : 0.01	
c : 0.25	e : 0.14	= : 0.11	g : 0.11	" : 0.11	d : 0.07	i : 0.05	h : 0.03	$ : 0.01	f : 0.01	' : 0.01	F : 0.01	[ : 0.01	
c : 0.20	e : 0.14	= : 0.11	[ : 0.11	g : 0.11	" : 0.11	i : 0.05	d : 0.03	! : 0.03	$ : 0.01	f : 0.01	h : 0.01	F : 0.01	
c : 0.25	e : 0.16	= : 0.11	g : 0.09	" : 0.09	! : 0.07	i : 0.05	f : 0.03	d : 0.03	b : 0.01	[ : 0.01	h : 0.01	a : 0.01	
c : 0.20	= : 0.11	[ : 0.11	g : 0.11	e : 0.11	d : 0.09	! : 0.07	i : 0.05	f : 0.03	b : 0.03	a : 0.01	h : 0.01	" : 0.01	
c : 0.25	d : 0.11	= : 0.09	g : 0.09	[ : 0.07	e : 0.07	! : 0.05	b : 0.05	i : 0.05	f : 0.03	" : 0.03	h : 0.01	$ : 0.01	a : 0.01	
c : 0.25	d : 0.11	b : 0.09	! : 0.09	= : 0.07	# : 0.07	g : 0.05	" : 0.05	[ : 0.05	$ : 0.03	e : 0.03	f : 0.01	h : 0.01	i : 0.01	
c : 0.20	! : 0.11	d : 0.11	" : 0.09	# : 0.09	= : 0.07	b : 0.07	g : 0.05	$ : 0.03	a : 0.03	e : 0.03	f : 0.01	h : 0.01	i : 0.01	[ : 0.01	
" : 0.27	c : 0.16	# : 0.16	[ : 0.07	$ : 0.05	d : 0.05	b : 0.05	! : 0.03	g : 0.03	f : 0.01	= : 0.01	h : 0.01	a : 0.01	
" : 0.31	# : 0.16	e : 0.09	! : 0.07	c : 0.05	$ : 0.05	b : 0.05	[ : 0.03	x : 0.03	a : 0.03	d : 0.03	g : 0.01	= : 0.01	
" : 0.27	d : 0.11	e : 0.09	c : 0.09	# : 0.09	[ : 0.09	! : 0.07	a : 0.05	$ : 0.03	x : 0.03	g : 0.01	b : 0.01	
c : 0.33	b : 0.11	[ : 0.11	d : 0.11	e : 0.09	" : 0.07	# : 0.07	x : 0.03	$ : 0.01	a : 0.01	! : 0.01	
b : 0.38	c : 0.33	d : 0.11	e : 0.09	x : 0.03	$ : 0.01	! : 0.01	
c : 0.31	b : 0.27	o : 0.12	e : 0.09	d : 0.09	[ : 0.03	x : 0.03	a : 0.01	
n : 0.51	o : 0.29	b : 0.03	m : 0.03	l : 0.03	x : 0.03	c : 0.01	d : 0.01	
n : 0.51	o : 0.29	l : 0.05	b : 0.03	m : 0.03	x : 0.03	c : 0.01	
n : 0.51	o : 0.29	l : 0.11	m : 0.03	x : 0.03	
n : 0.51	o : 0.29	l : 0.07	m : 0.03	x : 0.03	b : 0.01	c : 0.01	
n : 0.51	o : 0.29	l : 0.05	c : 0.03	b : 0.03	x : 0.03	d : 0.01	
c : 0.35	b : 0.24	o : 0.16	e : 0.09	d : 0.09	x : 0.03	a : 0.01	
b : 0.40	c : 0.33	e : 0.09	d : 0.09	x : 0.03	] : 0.01	2 : 0.01	
c : 0.31	b : 0.20	e : 0.09	d : 0.09	3 : 0.07	2 : 0.07	4 : 0.05	] : 0.03	x : 0.03	a : 0.01	
3 : 0.22	4 : 0.14	2 : 0.14	] : 0.12	e : 0.11	d : 0.09	a : 0.05	b : 0.03	x : 0.03	g : 0.01	
3 : 0.25	2 : 0.18	4 : 0.14	e : 0.11	c : 0.07	b : 0.05	a : 0.05	x : 0.03	g : 0.01	] : 0.01	= : 0.01	d : 0.01	
3 : 0.18	c : 0.14	4 : 0.14	d : 0.11	2 : 0.09	b : 0.09	] : 0.09	= : 0.05	g : 0.05	e : 0.01	
c : 0.29	d : 0.14	e : 0.11	= : 0.09	4 : 0.09	b : 0.05	g : 0.05	a : 0.03	i : 0.03	3 : 0.03	f : 0.01	h : 0.01	
c : 0.31	d : 0.12	e : 0.11	= : 0.09	] : 0.09	g : 0.07	2 : 0.03	i : 0.03	3 : 0.03	f : 0.01	b : 0.01	h : 0.01	a : 0.01	
c : 0.31	d : 0.12	= : 0.09	e : 0.09	g : 0.07	3 : 0.07	f : 0.03	2 : 0.03	b : 0.03	] : 0.03	i : 0.03	h : 0.01	4 : 0.01	
c : 0.22	] : 0.16	g : 0.11	3 : 0.11	= : 0.09	e : 0.09	f : 0.03	2 : 0.03	i : 0.03	d : 0.03	b : 0.01	h : 0.01	4 : 0.01	
c : 0.24	3 : 0.12	= : 0.11	g : 0.11	e : 0.09	f : 0.05	i : 0.05	d : 0.05	2 : 0.03	b : 0.03	] : 0.03	h : 0.01	4 : 0.01	
c : 0.20	g : 0.14	= : 0.11	3 : 0.09	] : 0.07	f : 0.05	i : 0.05	d : 0.05	a : 0.03	b : 0.03	e : 0.03	2 : 0.03	h : 0.01	F : 0.01	4 : 0.01	
c : 0.20	= : 0.11	g : 0.11	e : 0.09	2 : 0.07	] : 0.07	3 : 0.07	d : 0.07	i : 0.05	f : 0.03	h : 0.03	F : 0.01	4 : 0.01	5 : 0.01	
g : 0.16	c : 0.12	= : 0.11	d : 0.11	e : 0.11	] : 0.07	f : 0.05	i : 0.05	2 : 0.03	h : 0.03	3 : 0.01	: : 0.01	[ : 0.01	F : 0.01	4 : 0.01	5 : 0.01	
c : 0.16	g : 0.14	e : 0.12	= : 0.11	: : 0.07	d : 0.07	f : 0.05	i : 0.05	a : 0.03	5 : 0.03	3 : 0.01	] : 0.01	2 : 0.01	F : 0.01	h : 0.01	4 : 0.01	

#score	763.3936370904389
#seq	54
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_transcript_m3_run2.txt

#BEAR
eeeee[cccddddmmmmdddd]ccc]ee	chr17:40573694-40573968(-)$1	274	9	37	10.5034
c[eeeee[eeeeellleeeee]eeeeec	chr19:3457633-3457885(+)$1	252	106	134	9.2992
[eeeee!!cccooooooccc22eeeee]	chr9:126030372-126030623(-)$1	251	127	155	10.9414
dddeeeeeddddnnnnndddd]eeeee:	chr12:98987440-98987707(+)$1	267	62	90	11.1527
ee!!bb[ddddoooooodddd]bbeeee	chr8:41540803-41541084(-)$1	281	201	229	12.2046
ffdddd"""cccmmmmccc333dddd]f	chr1:1561348-1561665(+)$1	317	246	274	9.2237
bb[dddd[ddddmmmmddddddddbbcc	chr9:128003099-128003359(-)$1	260	173	201	10.4564
!!eeeeeddddoooooodddd]eeeeeb	chr6:53212685-53212947(-)$1	262	179	207	13.3659
dddeeeee[ddddmmmmdddd]eeeee4	chr12:122237466-122237709(-)$1	243	134	162	10.4929
(eeeee!!cccooooooccc22eeeeed	chr1:203764844-203765187(+)$1	343	190	218	10.3547
eeeeccc[ddddlllddddccc22eeee	chr17:46985943-46986202(+)$1	259	195	223	10.2538
####ddddddddnnnnndddd4444ddd	chr1:205718867-205719146(-)$1	279	31	59	12.4026
cc[ccc[ddddoooooodddd]cccccc	chr10:23002122-23002373(-)$1	251	22	50	13.4071
cc[eeeeeddddmmmmdddd4444eeee	chr6:86352242-86352481(-)$1	239	183	211	11.2696
%%cccddddddddllldddd22dddd]c	chr22:50879772-50880052(+)$1	280	28	56	10.6106
b[eeeee[ddddmmmmdddd]eeeee]b	chr12:28343481-28343837(+)$1	356	114	142	10.7438
Cddddbb[ddddnnnnnddddbb]dddd	chr12:48213199-48213463(-)$1	264	225	253	10.2346
!!dddd!!ddddmmmmdddd]ddddccc	chr11:485885-486172(+)$1	287	155	183	12.0029
geeeee"""cccooooooccc22eeeee	chr19:2270509-2270778(+)$1	269	16	44	10.4362
dddd[a[ddddoooooodddd]a]dddd	chr1:185014744-185015058(+)$1	314	155	183	13.4158
eeee[a"""ddddmmmmdddd333a]ee	chr19:1408159-1408414(+)$1	255	174	202	11.3647
ggggggg[ddddmmmmdddd]ggggggg	chr17:7477039-7477337(+)$1	298	114	142	10.3065
""dddd[eeeeennnnneeeeedddd22	chr22:19503861-19504143(+)$1	282	26	54	9.3901
dd[bb####ddddmmmmdddd333bb]d	chr19:1258102-1258360(+)$1	258	104	132	10.2783
hhhhhh"""ddddllldddd333hhhhh	chr12:132401775-132402035(+)$1	260	80	108	9.7931
Bdddd!!ddddoooooodddd22dddd:	chr2:61764329-61764608(-)$1	279	28	56	12.0586
gdddd"""eeeeellleeeee333dddd	chr2:32582664-32582932(+)$1	268	164	192	9.9986
###dddd[dddd[aooooooa]dddd]d	chr16:4896057-4896363(-)$1	306	84	112	10.4012
dd[ccceeeeeooooooeeeee]ccc22	chr4:1239942-1240201(-)$1	259	183	211	9.3571
ee!!ccc[ddddnnnnndddd]ccc]ee	chr12:113725298-113725623(+)$1	325	151	179	12.4254
[ffffffddddoooooodddd4444fff	chrX:70766913-70767141(+)$1	228	40	68	12.0773
g:dddd[ddddoooooodddd]dddd:d	chr6:149638889-149639158(+)$1	269	98	126	12.1205
hhhddddddddoooooodddd]dddd]h	chr2:132259101-132259355(+)$1	254	109	137	13.0278
EE:dddd[ddddnnnnndddd]ddddff	chr4:2252891-2253184(-)$1	293	154	182	10.0852
b[a[ccc[ddddlllddddccca]bb]c	chr3:9438226-9438543(-)$1	317	118	146	9.9814
!!dddd[cccooooooccc]dddd]ddd	chr16:31193674-31193914(+)$1	240	188	216	9.8126
oodddd:ddddooooooddddhhhhhhh	chr13:92000147-92000437(+)$1	290	140	168	10.0928
!ccc[bb[ddddooooooddddbb22cc	chr5:36877337-36877656(+)$1	319	102	130	10.7058
dddd####ddddmmmmdddd4444dddd	chr19:15510772-15511037(-)$1	265	26	54	11.6579
!!ccc####ddddmmmmdddd4444ccc	chr15:67358716-67359010(+)$1	294	251	279	11.6232
##dddd!!eeeeellleeeeedddd333	chr3:186502070-186502276(+)$1	206	79	107	9.4752
ddd[dddd[aooooooa]dddddddd]b	chr15:64125696-64125986(-)$1	290	242	270	10.1207
!!dddd!!ddddnnnnndddd]dddd]b	chr3:52567608-52567895(-)$1	287	27	55	13.9189
!!ccc"""ddddooooooddddccc22b	chr17:72200022-72200288(+)$1	266	125	153	12.4175
fffff"""ddddnnnnndddd4444fff	chr17:80695755-80696056(+)$1	301	222	250	11.9069
+++ddddddddoooooodddd]ddddff	chr19:46283998-46284249(-)$1	251	85	113	11.6860
ffffff!!ddddnnnnndddd22fffff	chr17:27620568-27620872(-)$1	304	212	240	11.1275
cc!!ddddddddllldddd333ddddcc	chr6:32074120-32074372(-)$1	252	182	210	11.1315
ffffccc[ddddnnnnndddd]ccc333	chr19:2050446-2050735(-)$1	289	229	257	11.9515
b!!dddd[ddddnnnnndddd4444ddd	chr9:131025092-131025394(-)$1	302	159	187	13.0716
gggggggddddoooooodddd]gggggg	chr22:50029818-50030071(-)$1	253	166	194	12.5681
gggggg:ddddooooooddddbb[cccb	chr11:32915258-32915537(+)$1	279	127	155	10.3801

#otherMatches

#Seq PSSM
CCUGGGCCUCCUGGAAGCGGGCGGGGCU	chr17:40573694-40573968(-)$1	274	9	37	10.5034
AAGGGUCACGGGGCCUCCCCGGGACCCU	chr19:3457633-3457885(+)$1	252	106	134	9.2992
gugccccggccgcUUCGGGCAAGGGCAG	chr9:126030372-126030623(-)$1	251	127	155	10.9414
AUCGCCAUCUUAGGGAGUGAGUGUGGCC	chr12:98987440-98987707(+)$1	267	62	90	11.1527
CUGAAGUGUGCCAUCUUGCAUCCUGGGA	chr8:41540803-41541084(-)$1	281	201	229	12.2046
AGUCAUGAGACGGGCUUGUAGAGUGAGU	chr1:1561348-1561665(+)$1	317	246	274	9.2237
CGUCGGCGUGUUCAAGAACGGCCGCGUG	chr9:128003099-128003359(-)$1	260	173	201	10.4564
AAGGAAAAGUGCCUUUUUACUGUUUCCA	chr6:53212685-53212947(-)$1	262	179	207	13.3659
CCCGUCUGUCAGCUUCUGUUGUCAGGCA	chr12:122237466-122237709(-)$1	243	134	162	10.4929
GGAAGUCAGAGCGGAUCCUUCAGCUUCG	chr1:203764844-203765187(+)$1	343	190	218	10.3547
GACGGCGAGCGCACCGCGCCGCAGUGUC	chr17:46985943-46986202(+)$1	259	195	223	10.2538
UUUCGACAGCGAACAUGUCGCGGCCUGU	chr1:205718867-205719146(-)$1	279	31	59	12.4026
UCACCGACUGCGGAAgggcggccggggc	chr10:23002122-23002373(-)$1	251	22	50	13.4071
CUUUGGGAGGAGGCGCCUCCACGGUCCC	chr6:86352242-86352481(-)$1	239	183	211	11.2696
AACAGCCCAGCUCUUGGGGCUCUGGGCC	chr22:50879772-50880052(+)$1	280	28	56	10.6106
GGGGCCUGGGUCUUGGGGUCGGGGCCGC	chr12:28343481-28343837(+)$1	356	114	142	10.7438
CGGUGUGCGGGCCCCACGUCCCAUCACC	chr12:48213199-48213463(-)$1	264	225	253	10.2346
uaaacagugcacgggcguguguguucac	chr11:485885-486172(+)$1	287	155	183	12.0029
UGGCGCACUCCGACAGCCCGGCAGCGCC	chr19:2270509-2270778(+)$1	269	16	44	10.4362
GCGGGGGUGUGAAGGGACAUggcgccgc	chr1:185014744-185015058(+)$1	314	155	183	13.4158
GGAGUCCAGGGCGCCGUCGCCGCCGCCU	chr19:1408159-1408414(+)$1	255	174	202	11.3647
UGGGGGGAAGGGGAUGUCCUACCCUCCG	chr17:7477039-7477337(+)$1	298	114	142	10.3065
CAUCUAACUUGGGGUGGCUGGGUGGGGA	chr22:19503861-19504143(+)$1	282	26	54	9.3901
CUGGGUGCUGGGGAGUUCCCCCCUCCGA	chr19:1258102-1258360(+)$1	258	104	132	10.2783
GCUCGGAGGCCGUGGGAUGGGGGUCGGG	chr12:132401775-132402035(+)$1	260	80	108	9.7931
cgggcgggccgggggcgcggcgggCCCA	chr2:61764329-61764608(-)$1	279	28	56	12.0586
GCGAGAGGUGAGGAGACCUUGGAGCUUG	chr2:32582664-32582932(+)$1	268	164	192	9.9986
AUUGAGUGGGUUGAAGGAGAUGGACUGG	chr16:4896057-4896363(-)$1	306	84	112	10.4012
GUAAGAGCUCUGUGCCGGGAGUGUCUGG	chr4:1239942-1240201(-)$1	259	183	211	9.3571
CCAUCCUCUCCCAAGGCGGGACAGGCGG	chr12:113725298-113725623(+)$1	325	151	179	12.4254
UACAGGGACCUCAACCUAGGUGCAAUCC	chrX:70766913-70767141(+)$1	228	40	68	12.0773
ggagggagggcugaggugUCCCCCCUGC	chr6:149638889-149639158(+)$1	269	98	126	12.1205
CCCCCAGCUGUCUUAGCACAGACUGGAG	chr2:132259101-132259355(+)$1	254	109	137	13.0278
AGGGGGAUGGGGGGACUCCUCUUCCCGC	chr4:2252891-2253184(-)$1	293	154	182	10.0852
GGUACGGUCCUCCCCGAGGCCGAGCGCC	chr3:9438226-9438543(-)$1	317	118	146	9.9814
AGGGCUAUUCCCAGCAGAGCAGUCAGCC	chr16:31193674-31193914(+)$1	240	188	216	9.8126
cggcccggggcggacuggcccggggcag	chr13:92000147-92000437(+)$1	290	140	168	10.0928
UGGGUAGCGGUGGUUUUGUACCCUCUCC	chr5:36877337-36877656(+)$1	319	102	130	10.7058
GGCCAGUUGGGGACCUCCCUUGUGGGCC	chr19:15510772-15511037(-)$1	265	26	54	11.6579
GAGGGGAGAGCGGGUUGCUGCGGGACUC	chr15:67358716-67359010(+)$1	294	251	279	11.6232
AGGGCUAUGCGCUUAAGGUGCAGUUGAG	chr3:186502070-186502276(+)$1	206	79	107	9.4752
GAGAGGGCCGAGAGACCCGCCCCUCCAG	chr15:64125696-64125986(-)$1	290	242	270	10.1207
CCGGCCGCCGUGAGGAGCACGAGGCCAC	chr3:52567608-52567895(-)$1	287	27	55	13.9189
CGGGGCGAGGGCGAGAGAGCCUCCCAAG	chr17:72200022-72200288(+)$1	266	125	153	12.4175
CCUCUGCUGUGGCUGCCCCACCCUAAGA	chr17:80695755-80696056(+)$1	301	222	250	11.9069
UGUGGCCCGAGCUGCAUCUCGCGGCCCC	chr19:46283998-46284249(-)$1	251	85	113	11.6860
AUUCUAGAGCUCGGGCUGAGCAAUGGGG	chr17:27620568-27620872(-)$1	304	212	240	11.1275
UCCUUUCCCCAGCCUCUGGUCUGGAAGA	chr6:32074120-32074372(-)$1	252	182	210	11.1315
CCCUGCAAGCCCCCGCCGGGUAUGUUCU	chr19:2050446-2050735(-)$1	289	229	257	11.9515
UAAGCAUGAUGAGGUAGUCAUAGAGGUG	chr9:131025092-131025394(-)$1	302	159	187	13.0716
UGGGUGGGGGUCUCCUCGCCCUCCAUCC	chr22:50029818-50030071(-)$1	253	166	194	12.5681
UGGGCUACGGGAGAAUCCCCGGGGCGCA	chr11:32915258-32915537(+)$1	279	127	155	10.3801

#DB
(((((.(((((((....)))).))).))	chr17:40573694-40573968(-)$1	1	9	37	10.5034
(.(((((.(((((...))))).))))))	chr19:3457633-3457885(+)$1	1	106	134	9.2992
.(((((..(((......)))..))))).	chr9:126030372-126030623(-)$1	1	127	155	10.9414
)))(((((((((.....)))).))))).	chr12:98987440-98987707(+)$1	1	62	90	11.1527
((..((.((((......)))).))))))	chr8:41540803-41541084(-)$1	1	201	229	12.2046
((((((...(((....)))...)))).)	chr1:1561348-1561665(+)$1	1	246	274	9.2237
((.((((.((((....))))))))))))	chr9:128003099-128003359(-)$1	1	173	201	10.4564
..(((((((((......)))).))))))	chr6:53212685-53212947(-)$1	1	179	207	13.3659
((((((((.((((....)))).))))).	chr12:122237466-122237709(-)$1	1	134	162	10.4929
.(((((..(((......)))..))))))	chr1:203764844-203765187(+)$1	1	190	218	10.3547
(((((((.((((...)))))))..))))	chr17:46985943-46986202(+)$1	1	195	223	10.2538
....((((((((.....))))....)))	chr1:205718867-205719146(-)$1	1	31	59	12.4026
((.(((.((((......)))).))))))	chr10:23002122-23002373(-)$1	1	22	50	13.4071
((.(((((((((....))))....))))	chr6:86352242-86352481(-)$1	1	183	211	11.2696
..(((((((((((...))))..)))).)	chr22:50879772-50880052(+)$1	1	28	56	10.6106
(.(((((.((((....)))).))))).)	chr12:28343481-28343837(+)$1	1	114	142	10.7438
)((((((.((((.....)))))).))))	chr12:48213199-48213463(-)$1	1	225	253	10.2346
..((((..((((....)))).)))))))	chr11:485885-486172(+)$1	1	155	183	12.0029
((((((...(((......)))..)))))	chr19:2270509-2270778(+)$1	1	16	44	10.4362
((((.(.((((......)))).).))))	chr1:185014744-185015058(+)$1	1	155	183	13.4158
((((.(...((((....))))...).))	chr19:1408159-1408414(+)$1	1	174	202	11.3647
(((((((.((((....)))).)))))))	chr17:7477039-7477337(+)$1	1	114	142	10.3065
..((((.(((((.....)))))))))..	chr22:19503861-19504143(+)$1	1	26	54	9.3901
((.((....((((....))))...)).)	chr19:1258102-1258360(+)$1	1	104	132	10.2783
((((((...((((...))))...)))))	chr12:132401775-132402035(+)$1	1	80	108	9.7931
(((((..((((......))))..)))).	chr2:61764329-61764608(-)$1	1	28	56	12.0586
(((((...(((((...)))))...))))	chr2:32582664-32582932(+)$1	1	164	192	9.9986
...((((.((((.(......).)))).)	chr16:4896057-4896363(-)$1	1	84	112	10.4012
((.((((((((......))))).)))..	chr4:1239942-1240201(-)$1	1	183	211	9.3571
((..(((.((((.....)))).))).))	chr12:113725298-113725623(+)$1	1	151	179	12.4254
.((((((((((......))))....)))	chrX:70766913-70767141(+)$1	1	40	68	12.0773
).((((.((((......)))).)))).(	chr6:149638889-149639158(+)$1	1	98	126	12.1205
(((((((((((......)))).)))).)	chr2:132259101-132259355(+)$1	1	109	137	13.0278
)).((((.((((.....)))).))))((	chr4:2252891-2253184(-)$1	1	154	182	10.0852
(.(.(((.((((...)))))))).)).)	chr3:9438226-9438543(-)$1	1	118	146	9.9814
..((((.(((......))).)))).)))	chr16:31193674-31193914(+)$1	1	188	216	9.8126
..)))).((((......))))(((((((	chr13:92000147-92000437(+)$1	1	140	168	10.0928
.(((.((.((((......))))))..))	chr5:36877337-36877656(+)$1	1	102	130	10.7058
((((....((((....))))....))))	chr19:15510772-15511037(-)$1	1	26	54	11.6579
..(((....((((....))))....)))	chr15:67358716-67359010(+)$1	1	251	279	11.6232
..((((..(((((...)))))))))...	chr3:186502070-186502276(+)$1	1	79	107	9.4752
(((.((((.(......).)))))))).)	chr15:64125696-64125986(-)$1	1	242	270	10.1207
..((((..((((.....)))).)))).)	chr3:52567608-52567895(-)$1	1	27	55	13.9189
..(((...((((......)))))))..)	chr17:72200022-72200288(+)$1	1	125	153	12.4175
(((((...((((.....))))....)))	chr17:80695755-80696056(+)$1	1	222	250	11.9069
...((((((((......)))).))))))	chr19:46283998-46284249(-)$1	1	85	113	11.6860
((((((..((((.....))))..)))))	chr17:27620568-27620872(-)$1	1	212	240	11.1275
((..((((((((...))))...))))))	chr6:32074120-32074372(-)$1	1	182	210	11.1315
(((((((.((((.....)))).)))...	chr19:2050446-2050735(-)$1	1	229	257	11.9515
(..((((.((((.....))))....)))	chr9:131025092-131025394(-)$1	1	159	187	13.0716
(((((((((((......)))).))))))	chr22:50029818-50030071(-)$1	1	166	194	12.5681
)))))).((((......))))((.((((	chr11:32915258-32915537(+)$1	1	127	155	10.3801

#PSSM
d : 0.13	! : 0.13	g : 0.11	e : 0.09	c : 0.07	f : 0.07	b : 0.07	# : 0.05	[ : 0.03	h : 0.03	( : 0.01	% : 0.01	C : 0.01	" : 0.01	B : 0.01	E : 0.01	o : 0.01	+ : 0.01	
d : 0.19	e : 0.15	! : 0.13	f : 0.09	c : 0.07	[ : 0.05	# : 0.05	g : 0.05	h : 0.03	b : 0.01	% : 0.01	" : 0.01	: : 0.01	E : 0.01	o : 0.01	+ : 0.01	
d : 0.30	e : 0.17	[ : 0.09	! : 0.07	c : 0.07	f : 0.07	g : 0.05	# : 0.03	h : 0.03	: : 0.01	a : 0.01	+ : 0.01	
d : 0.36	e : 0.23	c : 0.11	f : 0.07	! : 0.05	g : 0.05	[ : 0.03	# : 0.01	b : 0.01	h : 0.01	
d : 0.38	e : 0.19	c : 0.17	[ : 0.05	g : 0.05	f : 0.05	b : 0.03	h : 0.01	# : 0.01	
d : 0.34	e : 0.17	c : 0.11	b : 0.05	g : 0.05	# : 0.05	" : 0.05	a : 0.03	f : 0.03	[ : 0.01	h : 0.01	! : 0.01	
d : 0.19	e : 0.13	! : 0.13	" : 0.13	[ : 0.11	c : 0.09	# : 0.05	b : 0.03	g : 0.03	: : 0.03	f : 0.01	
d : 0.30	[ : 0.24	" : 0.13	! : 0.11	e : 0.09	# : 0.05	c : 0.03	
d : 0.67	e : 0.09	c : 0.07	" : 0.07	[ : 0.03	# : 0.03	
d : 0.78	e : 0.09	c : 0.09	a : 0.01	
d : 0.78	e : 0.09	c : 0.07	o : 0.03	
d : 0.55	o : 0.32	e : 0.07	c : 0.03	
o : 0.38	n : 0.21	d : 0.13	m : 0.13	e : 0.05	l : 0.05	[ : 0.01	
o : 0.38	m : 0.23	n : 0.21	l : 0.15	a : 0.01	
o : 0.40	m : 0.23	n : 0.21	l : 0.15	
o : 0.40	m : 0.23	n : 0.21	l : 0.09	d : 0.05	
o : 0.36	n : 0.21	d : 0.21	m : 0.09	e : 0.05	c : 0.03	a : 0.01	
d : 0.73	e : 0.09	c : 0.07	o : 0.07	] : 0.01	
d : 0.78	e : 0.09	c : 0.09	o : 0.01	
d : 0.73	e : 0.09	c : 0.09	3 : 0.03	o : 0.01	] : 0.01	
d : 0.61	e : 0.09	2 : 0.05	3 : 0.05	c : 0.05	] : 0.05	4 : 0.03	a : 0.01	
] : 0.32	d : 0.13	4 : 0.13	2 : 0.11	3 : 0.11	e : 0.05	c : 0.03	b : 0.03	g : 0.01	h : 0.01	
d : 0.28	e : 0.13	4 : 0.13	c : 0.09	b : 0.07	2 : 0.07	3 : 0.07	a : 0.03	g : 0.03	] : 0.01	h : 0.01	
d : 0.30	e : 0.15	4 : 0.13	c : 0.11	] : 0.05	3 : 0.05	b : 0.03	g : 0.03	h : 0.03	2 : 0.01	f : 0.01	[ : 0.01	
d : 0.34	e : 0.21	c : 0.13	4 : 0.09	b : 0.05	g : 0.03	h : 0.03	a : 0.01	] : 0.01	2 : 0.01	f : 0.01	
d : 0.36	e : 0.21	c : 0.09	] : 0.05	b : 0.05	f : 0.05	g : 0.03	h : 0.03	2 : 0.03	3 : 0.03	
e : 0.24	] : 0.17	d : 0.15	c : 0.13	f : 0.09	2 : 0.05	g : 0.03	h : 0.03	3 : 0.03	: : 0.01	
d : 0.21	c : 0.17	e : 0.13	f : 0.11	b : 0.11	h : 0.05	: : 0.03	g : 0.03	2 : 0.03	3 : 0.03	] : 0.01	4 : 0.01	

#score	579.0877368766652
#seq	52
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693ZAZ_SLTM_CDS_m2_run2.txt

#BEAR
cc[cccuuuuuuuuuuuuccc]c	chr9:138712715-138713002(-)$1	287	184	207	23.4183
c!!ddddtttttttttttdddd2	chr11:62285474-62285698(-)$1	224	6	29	20.7637
ff[cccuuuuuuuuuuuuccc]f	chr11:62285658-62285902(-)$1	244	212	235	23.3014
""ddddwwwwwwwwwwwwwwddd	chr11:62298612-62298873(-)$1	261	135	158	21.1768
ffffffxxxxxxxxxxxxxxxff	chr1:144930652-144930900(-)$1	248	129	152	16.7178
ddyyyyyyyyyyyyyyyydddd:	chr11:62296654-62296913(-)$1	259	57	80	18.1818
ggggggvvvvvvvvvvvvvgggg	chr11:62285783-62286018(-)$1	235	78	101	21.8091
d[ddddvvvvvvvvvvvvvdddd	chr8:144998220-144998480(-)$1	260	145	168	21.2358
bb[ccctttttttttttcccbbb	chr8:94747775-94748018(-)$1	243	183	206	20.2358
:ddddxxxxxxxxxxxxxxxddd	chr11:62299041-62299279(-)$1	238	214	237	15.7475
fffffftttttttttttffffff	chr19:58772269-58772509(+)$1	240	121	144	19.9136
$$$$bbuuuuuuuuuuuubb22g	chr16:30749540-30749794(+)$1	254	218	241	20.7239
eeeeewwwwwwwwwwwwwweeee	chr9:134350297-134350566(+)$1	269	35	58	20.9955
ccddddvvvvvvvvvvvvvdddd	chr12:72057249-72057553(-)$1	304	76	99	21.3184
bb[cccuuuuuuuuuuuuccc]b	chr11:637280-637537(+)$1	257	22	45	22.8674
gggggggtttttttttttggggg	chr12:104697593-104697895(+)$1	302	244	267	20.7607
ff[cccuuuuuuuuuuuuccc]f	chr11:62285498-62285743(-)$1	245	53	76	23.3014
!!ccc[assssssssssaccc]e	chr9:134351712-134351991(+)$1	279	88	111	15.9000
bb[ddddwwwwwwwwwwwwwwdd	chr8:94752437-94752733(-)$1	296	33	56	19.6538
===[bbvvvvvvvvvvvvvbb]=	chr20:31024320-31024577(+)$1	257	174	197	21.4498
ffffffvvvvvvvvvvvvvffff	chr11:62285137-62285373(-)$1	236	96	119	21.2727
fffffftttttttttttffffff	chr17:17067324-17067575(+)$1	251	4	27	19.9136
c!!ddddtttttttttttdddd2	chr11:62289406-62289641(-)$1	235	159	182	20.7637
beeeeeuuuuuuuuuuuueeeee	chr16:89349945-89350249(-)$1	304	140	163	21.9454
gggcccvvvvvvvvvvvvvccc:	chr16:89346968-89347210(-)$1	242	152	175	21.3108
!bbbbwwwwwwwwwwwwwwbb]b	chr16:89347730-89347972(-)$1	242	11	34	20.3197
ddddwwwwwwwwwwwwwwdddd:	chr11:62288115-62288367(-)$1	252	209	232	19.4302
Eeeeeeuuuuuuuuuuuueeeee	chr8:144941591-144941886(-)$1	295	213	236	21.1982
ccdddduuuuuuuuuuuudddd:	chr11:61897227-61897497(+)$1	270	209	232	21.2758
hhhhhhhttttttttttthhhhh	chr6:12122917-12123165(+)$1	248	26	49	18.3040
dd[a[bbuuuuuuuuuuuubb]a	chr8:94748322-94748567(-)$1	245	90	113	21.0074
c!!bbvvvvvvvvvvvvvbbccc	chr16:2812068-2812415(+)$1	347	244	267	21.0468
ddddccctttttttttttccc]d	chr22:23603441-23603660(+)$1	219	118	141	21.1265
:::cccuuuuuuuuuuuuccc:c	chr16:31091061-31091337(+)$1	276	115	138	19.1664
=======ttttttttttt=====	chr19:58990973-58991244(-)$1	271	53	76	20.8843
g[eeeeettttttttttteeeee	chr16:89346919-89347168(-)$1	249	82	105	20.6931
"""ccctttttttttttccc444	chr11:62292333-62292569(-)$1	236	72	95	21.0106
gggggggtttttttttttggggg	chr11:62286569-62286806(-)$1	237	35	58	20.7607
a!!a[bbtttttttttttbb]a2	chr16:89350227-89350495(-)$1	268	194	217	20.5683
ccdddduuuuuuuuuuuudddd]	chr1:16256263-16256472(+)$1	209	138	161	22.1692
#eeeeexxxxxxxxxxxxxxxee	chr11:62285990-62286266(-)$1	276	200	223	16.6985
ffffffxxxxxxxxxxxxxxxff	chr16:31090674-31090923(+)$1	249	169	192	16.7178
ggggggwwwwwwwwwwwwwwggg	chr8:94746092-94746349(-)$1	257	202	225	21.6735
ffffffuuuuuuuuuuuufffff	chr12:6707358-6707602(-)$1	244	55	78	21.9761
ggggggwwwwwwwwwwwwwwggg	chr8:94745977-94746239(-)$1	262	92	115	21.6735
cccxxxxxxxxxxxxxxxccc]c	chr22:50278153-50278438(+)$1	285	101	124	16.9377
a!!a[bbtttttttttttbb]a2	chr16:89350135-89350398(-)$1	263	97	120	20.5683
fffffattttttttttta]ffff	chr7:100732478-100732744(+)$1	266	179	202	20.5951
beeeeeyyyyyyyyyyyyyyyye	chr5:5462270-5462564(+)$1	294	68	91	19.7735
gggggguuuuuuuuuuuuggggg	chr1:16259121-16259383(+)$1	262	167	190	22.5230
iiixxxxxxxxxxxxxxxiiiii	chr1:16258335-16258572(+)$1	237	14	37	16.3982
ffffffuuuuuuuuuuuufffff	chr9:134350447-134350722(+)$1	275	199	222	21.9761

#otherMatches

#Seq PSSM
GGGCCAGCCUCAUUGAAGUGGAC	chr9:138712715-138713002(-)$1	287	184	207	23.4183
CAGCAUUAAACUUCCCAAAAUGA	chr11:62285474-62285698(-)$1	224	6	29	20.7637
GCAUUAAACUUCCCAAAAUGAAG	chr11:62285658-62285902(-)$1	244	212	235	23.3014
AAAGGCCCGAAGUUUAAGAUGCC	chr11:62298612-62298873(-)$1	261	135	158	21.1768
UUCCAGUGAAAUCCAGCCUACCU	chr1:144930652-144930900(-)$1	248	129	152	16.7178
UAGAAGGUGAAAUGAAAGUGCCA	chr11:62296654-62296913(-)$1	259	57	80	18.1818
GCAUCUGUUCCCAGCAUGAAGGU	chr11:62285783-62286018(-)$1	235	78	101	21.8091
GGCAGGUGGAGGAGGAGAUCCUG	chr8:144998220-144998480(-)$1	260	145	168	21.2358
UCAUUCAAAAUCUCCCAGAAGAA	chr8:94747775-94748018(-)$1	243	183	206	20.2358
AAGGCCCCCAAGAUCUCCAUGCC	chr11:62299041-62299279(-)$1	238	214	237	15.7475
UGAGGUUCAUGGUACUCACCUCA	chr19:58772269-58772509(+)$1	240	121	144	19.9136
GAAUCCUCCCCUCCCAUUGGUGG	chr16:30749540-30749794(+)$1	254	218	241	20.7239
GGGACCCAUCAAGAAACCAGUCC	chr9:134350297-134350566(+)$1	269	35	58	20.9955
UCCGUUAGGAAAGAAGGGAAACG	chr12:72057249-72057553(-)$1	304	76	99	21.3184
CCAUGGGGAACCGCAGCACCGCG	chr11:637280-637537(+)$1	257	22	45	22.8674
GCAGUACCGGCAGCUCAUGUACU	chr12:104697593-104697895(+)$1	302	244	267	20.7607
GCAUUAAACUUCCCAAAAUGAAG	chr11:62285498-62285743(-)$1	245	53	76	23.3014
GACAGACAGAGCCGAAAGCUGGA	chr9:134351712-134351991(+)$1	279	88	111	15.9000
GCGUAACGGAAAGGCACGGAGGU	chr8:94752437-94752733(-)$1	296	33	56	19.6538
CUGAGAUCCCUCCAGUUUUUCCC	chr20:31024320-31024577(+)$1	257	174	197	21.4498
GCUCCUGAUAUCAGUGUGAAGGG	chr11:62285137-62285373(-)$1	236	96	119	21.2727
AGGAGCUUUCUGUGGUUGUUCCU	chr17:17067324-17067575(+)$1	251	4	27	19.9136
UGAAUCUGAAAGGUCCAAAGAUG	chr11:62289406-62289641(-)$1	235	159	182	20.7637
CGGGCGGGACAGAAAGGACGCCC	chr16:89349945-89350249(-)$1	304	140	163	21.9454
GGGCACCUCUGAAAACCCUGUGA	chr16:89346968-89347210(-)$1	242	152	175	21.3108
CGCGGAAAAUAAGCUACACCCAG	chr16:89347730-89347972(-)$1	242	11	34	20.3197
GGGCCCCAAAUUUAAAAUGCCUG	chr11:62288115-62288367(-)$1	252	209	232	19.4302
AGCAGGAAGGAGCUCAUCCCUGC	chr8:144941591-144941886(-)$1	295	213	236	21.1982
UGAGUCUCCCACGAUGCUGACUA	chr11:61897227-61897497(+)$1	270	209	232	21.2758
AAAUUUUGAAAAUCAUAAGAAAU	chr6:12122917-12123165(+)$1	248	26	49	18.3040
ACGUGCCAUAAGUCGUUCAGGAG	chr8:94748322-94748567(-)$1	245	90	113	21.0074
GAUCCAGAACUCCCACCAGGCGU	chr16:2812068-2812415(+)$1	347	244	267	21.0468
GCCGCUGCCACCACCUCUCAGCC	chr22:23603441-23603660(+)$1	219	118	141	21.1265
AAGGGGGAGGAGAUAGAGCCCAG	chr16:31091061-31091337(+)$1	276	115	138	19.1664
UAGGGCUGGUAGCACAGAGGCCC	chr19:58990973-58991244(-)$1	271	53	76	20.8843
AGCAGGCGCUUGCCUCUAGCCUG	chr16:89346919-89347168(-)$1	249	82	105	20.6931
AAGUGGAUAUUAAUGCCCCAGAU	chr11:62292333-62292569(-)$1	236	72	95	21.0106
CAGGGAUUUGACCUGAAUGUUCC	chr11:62286569-62286806(-)$1	237	35	58	20.7607
GGACAGCAAGGAGAGGAGGCGGG	chr16:89350227-89350495(-)$1	268	194	217	20.5683
CCUCCUAGCAAAAAGAAAAGGAU	chr1:16256263-16256472(+)$1	209	138	161	22.1692
GGGCCCGAUGUUUCUCUAAAGGG	chr11:62285990-62286266(-)$1	276	200	223	16.6985
CUGGUGAACCACCGCAAGAUCCA	chr16:31090674-31090923(+)$1	249	169	192	16.7178
AGGAGGAAGAUUUUAGAUGCCCU	chr8:94746092-94746349(-)$1	257	202	225	21.6735
GUGGGGUCAGCCACCAUCUCCCA	chr12:6707358-6707602(-)$1	244	55	78	21.9761
AGGAGGAAGAUUUUAGAUGCCCU	chr8:94745977-94746239(-)$1	262	92	115	21.6735
GGGGAAGAAUGGGAAGGACCUGG	chr22:50278153-50278438(+)$1	285	101	124	16.9377
GGACAGCAAGGAGAGGAGGCGGG	chr16:89350135-89350398(-)$1	263	97	120	20.5683
AAGGGCUACAUCUUUCUGACCCU	chr7:100732478-100732744(+)$1	266	179	202	20.5951
CCUCAUCCAAAACCAAGACAUUG	chr5:5462270-5462564(+)$1	294	68	91	19.7735
CUGCCUCUGCUGCCUAUAAGGCA	chr1:16259121-16259383(+)$1	262	167	190	22.5230
CAGAGAAGAUUACAAGGACUGCU	chr1:16258335-16258572(+)$1	237	14	37	16.3982
UGAAGAGAAAUAACUGGAUCUUU	chr9:134350447-134350722(+)$1	275	199	222	21.9761

#DB
((.(((............))).)	chr9:138712715-138713002(-)$1	1	184	207	23.4183
(..((((...........)))).	chr11:62285474-62285698(-)$1	1	6	29	20.7637
((.(((............))).)	chr11:62285658-62285902(-)$1	1	212	235	23.3014
..((((..............)))	chr11:62298612-62298873(-)$1	1	135	158	21.1768
((((((...............))	chr1:144930652-144930900(-)$1	1	129	152	16.7178
((................)))).	chr11:62296654-62296913(-)$1	1	57	80	18.1818
((((((.............))))	chr11:62285783-62286018(-)$1	1	78	101	21.8091
(.((((.............))))	chr8:144998220-144998480(-)$1	1	145	168	21.2358
((.(((...........))))))	chr8:94747775-94748018(-)$1	1	183	206	20.2358
.((((...............)))	chr11:62299041-62299279(-)$1	1	214	237	15.7475
((((((...........))))))	chr19:58772269-58772509(+)$1	1	121	144	19.9136
....((............))..)	chr16:30749540-30749794(+)$1	1	218	241	20.7239
(((((..............))))	chr9:134350297-134350566(+)$1	1	35	58	20.9955
((((((.............))))	chr12:72057249-72057553(-)$1	1	76	99	21.3184
((.(((............))).)	chr11:637280-637537(+)$1	1	22	45	22.8674
(((((((...........)))))	chr12:104697593-104697895(+)$1	1	244	267	20.7607
((.(((............))).)	chr11:62285498-62285743(-)$1	1	53	76	23.3014
..(((.(..........)))).)	chr9:134351712-134351991(+)$1	1	88	111	15.9000
((.((((..............))	chr8:94752437-94752733(-)$1	1	33	56	19.6538
(((.((.............)).)	chr20:31024320-31024577(+)$1	1	174	197	21.4498
((((((.............))))	chr11:62285137-62285373(-)$1	1	96	119	21.2727
((((((...........))))))	chr17:17067324-17067575(+)$1	1	4	27	19.9136
(..((((...........)))).	chr11:62289406-62289641(-)$1	1	159	182	20.7637
((((((............)))))	chr16:89349945-89350249(-)$1	1	140	163	21.9454
)))(((.............))).	chr16:89346968-89347210(-)$1	1	152	175	21.3108
.((((..............)).)	chr16:89347730-89347972(-)$1	1	11	34	20.3197
((((..............)))).	chr11:62288115-62288367(-)$1	1	209	232	19.4302
((((((............)))))	chr8:144941591-144941886(-)$1	1	213	236	21.1982
))((((............)))).	chr11:61897227-61897497(+)$1	1	209	232	21.2758
(((((((...........)))))	chr6:12122917-12123165(+)$1	1	26	49	18.3040
((.(.((............)).)	chr8:94748322-94748567(-)$1	1	90	113	21.0074
(..((.............)))))	chr16:2812068-2812415(+)$1	1	244	267	21.0468
(((((((...........))).)	chr22:23603441-23603660(+)$1	1	118	141	21.1265
...(((............))).(	chr16:31091061-31091337(+)$1	1	115	138	19.1664
(((((((...........)))))	chr19:58990973-58991244(-)$1	1	53	76	20.8843
(.(((((...........)))))	chr16:89346919-89347168(-)$1	1	82	105	20.6931
...(((...........)))...	chr11:62292333-62292569(-)$1	1	72	95	21.0106
(((((((...........)))))	chr11:62286569-62286806(-)$1	1	35	58	20.7607
(..(.((...........)).).	chr16:89350227-89350495(-)$1	1	194	217	20.5683
((((((............)))).	chr1:16256263-16256472(+)$1	1	138	161	22.1692
.(((((...............))	chr11:62285990-62286266(-)$1	1	200	223	16.6985
((((((...............))	chr16:31090674-31090923(+)$1	1	169	192	16.7178
((((((..............)))	chr8:94746092-94746349(-)$1	1	202	225	21.6735
((((((............)))))	chr12:6707358-6707602(-)$1	1	55	78	21.9761
((((((..............)))	chr8:94745977-94746239(-)$1	1	92	115	21.6735
(((...............))).)	chr22:50278153-50278438(+)$1	1	101	124	16.9377
(..(.((...........)).).	chr16:89350135-89350398(-)$1	1	97	120	20.5683
((((((...........).))))	chr7:100732478-100732744(+)$1	1	179	202	20.5951
((((((................)	chr5:5462270-5462564(+)$1	1	68	91	19.7735
((((((............)))))	chr1:16259121-16259383(+)$1	1	167	190	22.5230
(((...............)))))	chr1:16258335-16258572(+)$1	1	14	37	16.3982
((((((............)))))	chr9:134350447-134350722(+)$1	1	199	222	21.9761

#PSSM
f : 0.19	c : 0.15	g : 0.15	d : 0.09	b : 0.09	" : 0.03	: : 0.03	! : 0.03	= : 0.03	a : 0.03	$ : 0.01	e : 0.01	E : 0.01	h : 0.01	# : 0.01	i : 0.01	
f : 0.19	g : 0.13	! : 0.11	c : 0.09	d : 0.09	e : 0.09	b : 0.07	" : 0.03	[ : 0.03	= : 0.03	$ : 0.01	h : 0.01	: : 0.01	i : 0.01	
d : 0.15	f : 0.15	[ : 0.13	g : 0.13	e : 0.11	! : 0.09	c : 0.03	= : 0.03	y : 0.01	$ : 0.01	b : 0.01	h : 0.01	: : 0.01	" : 0.01	i : 0.01	
d : 0.21	c : 0.17	f : 0.15	g : 0.11	e : 0.11	a : 0.05	b : 0.03	x : 0.03	y : 0.01	$ : 0.01	[ : 0.01	h : 0.01	= : 0.01	
c : 0.19	d : 0.17	f : 0.15	g : 0.11	e : 0.11	b : 0.07	[ : 0.05	x : 0.03	y : 0.01	w : 0.01	h : 0.01	= : 0.01	
c : 0.17	d : 0.15	f : 0.13	g : 0.11	b : 0.09	e : 0.09	x : 0.05	w : 0.05	y : 0.01	[ : 0.01	h : 0.01	v : 0.01	= : 0.01	a : 0.01	
u : 0.24	v : 0.13	w : 0.11	x : 0.11	t : 0.09	d : 0.05	b : 0.05	y : 0.03	g : 0.03	a : 0.01	h : 0.01	c : 0.01	= : 0.01	e : 0.01	
t : 0.28	u : 0.26	w : 0.13	v : 0.13	x : 0.11	y : 0.03	s : 0.01	
t : 0.28	u : 0.26	w : 0.13	v : 0.13	x : 0.11	y : 0.03	s : 0.01	
t : 0.28	u : 0.26	w : 0.13	v : 0.13	x : 0.11	y : 0.03	s : 0.01	
t : 0.28	u : 0.26	w : 0.13	v : 0.13	x : 0.11	y : 0.03	s : 0.01	
t : 0.28	u : 0.26	w : 0.13	v : 0.13	x : 0.11	y : 0.03	s : 0.01	
t : 0.28	u : 0.26	w : 0.13	v : 0.13	x : 0.11	y : 0.03	s : 0.01	
t : 0.28	u : 0.26	w : 0.13	v : 0.13	x : 0.11	y : 0.03	s : 0.01	
t : 0.28	u : 0.26	w : 0.13	v : 0.13	x : 0.11	y : 0.03	s : 0.01	
t : 0.28	u : 0.26	w : 0.13	v : 0.13	x : 0.11	y : 0.03	s : 0.01	
t : 0.28	u : 0.26	w : 0.13	v : 0.13	x : 0.11	y : 0.03	s : 0.01	
u : 0.26	t : 0.19	w : 0.13	v : 0.13	x : 0.11	y : 0.03	c : 0.03	f : 0.03	a : 0.03	
c : 0.19	d : 0.11	w : 0.11	v : 0.11	x : 0.07	f : 0.07	b : 0.07	g : 0.05	e : 0.05	h : 0.01	u : 0.01	= : 0.01	] : 0.01	y : 0.01	i : 0.01	
c : 0.21	d : 0.15	b : 0.13	f : 0.11	w : 0.07	x : 0.07	g : 0.07	e : 0.07	h : 0.01	= : 0.01	y : 0.01	i : 0.01	
c : 0.19	d : 0.19	g : 0.11	f : 0.11	b : 0.07	e : 0.07	x : 0.05	] : 0.03	2 : 0.01	w : 0.01	h : 0.01	= : 0.01	4 : 0.01	y : 0.01	i : 0.01	
d : 0.21	] : 0.19	f : 0.15	g : 0.11	e : 0.09	c : 0.03	a : 0.03	b : 0.01	2 : 0.01	h : 0.01	: : 0.01	= : 0.01	4 : 0.01	y : 0.01	i : 0.01	
f : 0.19	g : 0.13	e : 0.13	d : 0.11	c : 0.07	2 : 0.07	: : 0.07	b : 0.05	= : 0.03	h : 0.01	a : 0.01	4 : 0.01	] : 0.01	i : 0.01	

#score	1061.1542353076063
#seq	52
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_transcript_m3_run1.txt

#BEAR
cc[ffffffvvvvvvvvvvvvvffffff	chr17:46128250-46128543(+)$1	293	176	204	23.0271
b####ddddwwwwwwwwwwwwwwdddd5	chr20:17661998-17662277(-)$1	279	115	143	21.8979
bb[ffffffuuuuuuuuuuuuffffffb	chr16:50614016-50614352(+)$1	336	183	211	22.7759
[bb[eeeeevvvvvvvvvvvvveeeeeb	chrX:73506929-73507219(-)$1	290	212	240	23.2656
++gggggggtttttttttttgggggggf	chr2:11720520-11720848(+)$1	328	223	251	21.2792
!!ccc[cccuuuuuuuuuuuucccccc2	chr9:111808801-111809047(-)$1	246	71	99	25.0588
!gggggggwwwwwwwwwwwwwwgggggg	chr9:35690584-35690872(-)$1	288	167	195	23.6195
iiiiiiiiiuuuuuuuuuuuuiiiiiii	chr3:65578115-65578385(-)$1	270	147	175	24.7731
[hhhhhhhhwwwwwwwwwwwwwwhhhhh	chr12:62997501-62997760(+)$1	259	170	198	21.5724
[bb[eeeeevvvvvvvvvvvvveeeee]	chr18:20795001-20795319(+)$1	318	37	65	23.5430
ffff[ddddvvvvvvvvvvvvvdddd33	chr17:28443794-28444129(+)$1	335	127	155	23.1892
EEggggggguuuuuuuuuuuuggggggg	chr10:77966236-77966531(+)$1	295	29	57	22.4931
gggggg[bbwwwwwwwwwwwwwwbb]gg	chr20:62667834-62668096(+)$1	262	204	232	22.7718
c$$$$$cccuuuuuuuuuuuuccc22cc	chr5:159913698-159913947(+)$1	249	58	86	23.5492
ffffeeeeevvvvvvvvvvvvveeeee]	chr16:22335358-22335651(+)$1	293	8	36	23.2741
iiiiiiiiiuuuuuuuuuuuuiiiiiii	chr19:36706102-36706393(+)$1	291	214	242	24.7731
hhhhhhhhyyyyyyyyyyyyyyyyhhhh	chr3:194212421-194212763(+)$1	342	120	148	21.1492
c[ddddyyyyyyyyyyyyyyyyddddcc	chr16:50613103-50613311(+)$1	208	86	114	21.9534
%%ccc"""auuuuuuuuuuuua333ccc	chr17:55333766-55334040(+)$1	274	208	236	23.2613
c!!eeeeevvvvvvvvvvvvveeeeecc	chr9:96939282-96939548(+)$1	266	81	109	23.6575
dd[ffffffuuuuuuuuuuuuffffff]	chr21:46282887-46283090(-)$1	203	2	30	23.2596
ggg[eeeeewwwwwwwwwwwwwweeeee	chr17:80803969-80804250(+)$1	281	61	89	23.0852
cc!!ddddvvvvvvvvvvvvvdddd22c	chr7:100172861-100173141(-)$1	280	190	218	22.9485
ee[bbcccwwwwwwwwwwwwwwccc]bb	chr7:157612004-157612315(-)$1	311	218	246	22.5274
cc[eeeeevvvvvvvvvvvvveeeee]c	chr6:131200938-131201152(-)$1	214	148	176	23.4349
ffffff[bbuuuuuuuuuuuubbfffff	chr7:99691299-99691508(-)$1	209	155	183	22.6914
c[ddddyyyyyyyyyyyyyyyyddddcc	chr16:50613042-50613290(+)$1	248	147	175	21.9534
e$$$$$cccwwwwwwwwwwwwwwccc55	chr17:80211078-80211463(-)$1	385	166	194	21.0223
e[a[cccxxxxxxxxxxxxxxxccc]a]	chr17:27718048-27718317(+)$1	269	93	121	19.7069
!!ccc[cccuuuuuuuuuuuucccccc2	chr9:111808711-111808989(-)$1	278	13	41	25.0588
eeeeeeeevvvvvvvvvvvvveeeee22	chr1:29572566-29572887(+)$1	321	211	239	22.4556
[hhhhhhhhuuuuuuuuuuuuhhhhhhh	chr22:42298816-42299033(+)$1	217	26	54	22.1664
##dddd[bbyyyyyyyyyyyyyyyybbd	chr16:87739757-87740061(-)$1	304	48	76	21.4658
##dddd[bbyyyyyyyyyyyyyyyybbd	chr16:87739871-87740115(-)$1	244	102	130	21.4658
c!!ffffffyyyyyyyyyyyyyyyyfff	chr20:62299224-62299567(+)$1	343	264	292	22.1930
======[ccctttttttttttccc====	chr13:92003155-92003404(+)$1	249	183	211	23.8035
=!!ddddwwwwwwwwwwwwwwdddd22=	chr7:1065536-1065777(-)$1	241	155	183	22.1729
[ccc!!cccyyyyyyyyyyyyyyyyccc	chr12:691507-691782(-)$1	275	120	148	22.9816
dd"""dddduuuuuuuuuuuudddd333	chr12:691207-691472(-)$1	265	54	82	24.0324
c[ddddccctttttttttttccc]dddd	chr22:33156547-33156846(-)$1	299	189	217	22.3221
ee[gggggggtttttttttttggggggg	chr20:62572714-62572939(-)$1	225	67	95	22.7046
dddd[bb[bbtttttttttttbb]bb]d	chr10:725108-725347(-)$1	239	177	205	20.4140
e$$$$$cccvvvvvvvvvvvvvccc666	chr5:139646474-139646691(-)$1	217	52	80	21.8434
dd[bb[ddddtttttttttttdddd]bb	chr4:38869403-38869688(+)$1	285	173	201	21.5337
cc[bb[ddddtttttttttttdddd]bb	chr16:28878114-28878410(+)$1	296	174	202	21.8084
dddgggggggtttttttttttggggggg	chr10:424118-424435(-)$1	317	257	285	22.3502
b"""eeeeeuuuuuuuuuuuueeeeebb	chr16:85687590-85687851(+)$1	261	176	204	23.9629
fff[cccyyyyyyyyyyyyyyyyccc]f	chr21:45734194-45734511(+)$1	317	222	250	22.4177
ggggeeeeexxxxxxxxxxxxxxxeeee	chr19:2227473-2227755(+)$1	282	233	261	19.1563
=========vvvvvvvvvvvvv======	chr18:76906249-76906499(+)$1	250	81	109	24.4735
!ccc[eeeeettttttttttteeeeecc	chr7:158448231-158448541(-)$1	310	275	303	22.9076
###ffffffvvvvvvvvvvvvvffffff	chr12:131521048-131521304(+)$1	256	194	222	23.1020
ddd"""ccctttttttttttcccdddd]	chr2:219265622-219265877(+)$1	255	34	62	22.4200
&&dddd[bbwwwwwwwwwwwwwwbbddd	chr21:46282781-46283051(-)$1	270	192	220	20.7683
dhhhhhhhhuuuuuuuuuuuuhhhhhhh	chr1:21982768-21983014(-)$1	246	136	164	21.9061
[ccceeeeeuuuuuuuuuuuueeeee44	chr6:128327053-128327395(-)$1	342	192	220	24.3973

#otherMatches

#Seq PSSM
GUCUUUUGGAAGAUUUUAAAAACCAAAA	chr17:46128250-46128543(+)$1	293	176	204	23.0271
GAGGAGGGCGGGAUUGAAUgggggccca	chr20:17661998-17662277(-)$1	279	115	143	21.8979
CACUGUGUGCUCACCCCUUCCCACACAU	chr16:50614016-50614352(+)$1	336	183	211	22.7759
auuagaugaauaaauGAAUGACUCAUCA	chrX:73506929-73507219(-)$1	290	212	240	23.2656
CUGCAAGGAAAAUGAUUUCCUCCUUGCC	chr2:11720520-11720848(+)$1	328	223	251	21.2792
AUCAGUCAUUAAUCAUCAUCUAUGUUGC	chr9:111808801-111809047(-)$1	246	71	99	25.0588
GCCGCGUGGAAAAUAUGCGGGGCACGUG	chr9:35690584-35690872(-)$1	288	167	195	23.6195
GUCAAUUUCUUUUCCCCAUCUGAAAUUG	chr3:65578115-65578385(-)$1	270	147	175	24.7731
GUUAGUUUCACAUUUUCCUAGAAGGAAU	chr12:62997501-62997760(+)$1	259	170	198	21.5724
UAAGGAGCGAUAAUCAUGGCACUGUUUG	chr18:20795001-20795319(+)$1	318	37	65	23.5430
AACUACGGCGACUGUAUCUUUGGCCGAG	chr17:28443794-28444129(+)$1	335	127	155	23.1892
ccucuguguccucagccccuaacacaga	chr10:77966236-77966531(+)$1	295	29	57	22.4931
CUCUGGUUCUCGCUAUGACCUCUGACCC	chr20:62667834-62668096(+)$1	262	204	232	22.7718
CCCUUUGCUUAUCAGACCCUUAGCCAGU	chr5:159913698-159913947(+)$1	249	58	86	23.5492
CAGCCCGAGUCCUCAUCGUAUCCUCGGA	chr16:22335358-22335651(+)$1	293	8	36	23.2741
UGGGUGCGGGAUUGUGUGUGAUUGUGCC	chr19:36706102-36706393(+)$1	291	214	242	24.7731
ggcaugcccccucaucucucaccuggca	chr3:194212421-194212763(+)$1	342	120	148	21.1492
CACGCAUGCCCUGUCUUACUCCUGCGGG	chr16:50613103-50613311(+)$1	208	86	114	21.9534
AGCCCgggcgggggggaggaggaggggg	chr17:55333766-55334040(+)$1	274	208	236	23.2613
UUUCUUCAAUUUUAAUACCCAUGAAGGC	chr9:96939282-96939548(+)$1	266	81	109	23.6575
CCGUGGUGGGCUGUGUCUCUGCUGCUGA	chr21:46282887-46283090(-)$1	203	2	30	23.2596
GGCUUAGGGGGUGAGGGUGUAAGCCCUG	chr17:80803969-80804250(+)$1	281	61	89	23.0852
UCCACCUGCUCUCCUCUCCCCCAGGCUG	chr7:100172861-100173141(-)$1	280	190	218	22.9485
AGGCUUCCUAAUUGACGCUGACGGAUGG	chr7:157612004-157612315(-)$1	311	218	246	22.5274
GUAAACCUAUUCUCUCCUAAAGGGUUAA	chr6:131200938-131201152(-)$1	214	148	176	23.4349
UCCCCAAGCUCCAUCUGUCAUGCUGGGG	chr7:99691299-99691508(-)$1	209	155	183	22.6914
CACGCAUGCCCUGUCUUACUCCUGCGGG	chr16:50613042-50613290(+)$1	248	147	175	21.9534
GCAGGCACCUGGGGGAACAAUUUGGUCA	chr17:80211078-80211463(-)$1	385	166	194	21.0223
UGGGGGAGGGAGAAAAGGAGGGUCUGUG	chr17:27718048-27718317(+)$1	269	93	121	19.7069
AUCAGUCAUUAAUCAUCAUCUAUGUUGC	chr9:111808711-111808989(-)$1	278	13	41	25.0588
GCUCCUACCACCAUGGUAUCUGUAGGCU	chr1:29572566-29572887(+)$1	321	211	239	22.4556
ACUCUGGGGCUCUCCACUUCCUCCCAGA	chr22:42298816-42299033(+)$1	217	26	54	22.1664
GUGUUGUGCCGACCAACCCCCCCACGCC	chr16:87739757-87740061(-)$1	304	48	76	21.4658
GUGUUGUGCCGACCAACCCCCCCACGCC	chr16:87739871-87740115(-)$1	244	102	130	21.4658
CCCCACACUCAACUCCCCUCCUCCCAGU	chr20:62299224-62299567(+)$1	343	264	292	22.1930
GUGCAGGUAGUGUUUAGUUAUCUACUGC	chr13:92003155-92003404(+)$1	249	183	211	23.8035
ACUCUUCCCUCCACUGCAGCUGAAGCUU	chr7:1065536-1065777(-)$1	241	155	183	22.1729
cugccugUGCCCAUUCAUUCAUUCACAC	chr12:691507-691782(-)$1	275	120	148	22.9816
guCCauucauucauucacuccugagcac	chr12:691207-691472(-)$1	265	54	82	24.0324
GAGCCUGGUGAAUUUCAGAAGCCUGGGC	chr22:33156547-33156846(-)$1	299	189	217	22.3221
CCACUUCUGCUUCCUCUUAGCGCAGGAG	chr20:62572714-62572939(-)$1	225	67	95	22.7046
CCUGGGUGUGGGGAGUAGAGAUGGGCGC	chr10:725108-725347(-)$1	239	177	205	20.4140
GAUUCCAGUACACCUGCAUUUAACUUUA	chr5:139646474-139646691(-)$1	217	52	80	21.8434
UGCCCUCUGCGUUAGUGAGAAGCAGUGG	chr4:38869403-38869688(+)$1	285	173	201	21.5337
CUGCUGCUUCGAAGUGAAGGAGAAGGAG	chr16:28878114-28878410(+)$1	296	174	202	21.8084
GCAUUUAAAGUAUUUUUUUCUCUUUAAA	chr10:424118-424435(-)$1	317	257	285	22.3502
GUUUCUAGAACAUGAACUAAAUCUAGCG	chr16:85687590-85687851(+)$1	261	176	204	23.9629
CGGAAGCAGGAGAGGGUGGGGAGGCUGC	chr21:45734194-45734511(+)$1	317	222	250	22.4177
GAAGCUGCGUUUUUCUCUCCUAUUUGCA	chr19:2227473-2227755(+)$1	282	233	261	19.1563
CGGUGUGCAGAGUGACUGAAGGUGCACG	chr18:76906249-76906499(+)$1	250	81	109	24.4735
CCAGAGCGGGGGUCUUUUCAGCUCGCCU	chr7:158448231-158448541(-)$1	310	275	303	22.9076
accgggccucacucaccgcaccgggccu	chr12:131521048-131521304(+)$1	256	194	222	23.1020
ACUGAGGGCAAGGUGGAAAGGCUAGUUG	chr2:219265622-219265877(+)$1	255	34	62	22.4200
ACUGUCAUGGAAAAAUGGAAAAUCAGAC	chr21:46282781-46283051(-)$1	270	192	220	20.7683
gugcaguggugugaucuuuggucacugc	chr1:21982768-21983014(-)$1	246	136	164	21.9061
CAGGAGGAGCUACUAUUCUUACUCCUAC	chr6:128327053-128327395(-)$1	342	192	220	24.3973

#DB
((.((((((.............))))))	chr17:46128250-46128543(+)$1	1	176	204	23.0271
(....((((..............)))).	chr20:17661998-17662277(-)$1	1	115	143	21.8979
((.((((((............)))))))	chr16:50614016-50614352(+)$1	1	183	211	22.7759
.((.(((((.............))))))	chrX:73506929-73507219(-)$1	1	212	240	23.2656
..(((((((...........))))))))	chr2:11720520-11720848(+)$1	1	223	251	21.2792
..(((.(((............)))))).	chr9:111808801-111809047(-)$1	1	71	99	25.0588
.(((((((..............))))))	chr9:35690584-35690872(-)$1	1	167	195	23.6195
(((((((((............)))))))	chr3:65578115-65578385(-)$1	1	147	175	24.7731
.((((((((..............)))))	chr12:62997501-62997760(+)$1	1	170	198	21.5724
.((.(((((.............))))).	chr18:20795001-20795319(+)$1	1	37	65	23.5430
((((.((((.............))))..	chr17:28443794-28444129(+)$1	1	127	155	23.1892
(((((((((............)))))))	chr10:77966236-77966531(+)$1	1	29	57	22.4931
((((((.((..............)).))	chr20:62667834-62668096(+)$1	1	204	232	22.7718
(.....(((............)))..))	chr5:159913698-159913947(+)$1	1	58	86	23.5492
(((((((((.............))))).	chr16:22335358-22335651(+)$1	1	8	36	23.2741
(((((((((............)))))))	chr19:36706102-36706393(+)$1	1	214	242	24.7731
((((((((................))))	chr3:194212421-194212763(+)$1	1	120	148	21.1492
(.((((................))))))	chr16:50613103-50613311(+)$1	1	86	114	21.9534
..(((...(............)...)))	chr17:55333766-55334040(+)$1	1	208	236	23.2613
(..(((((.............)))))))	chr9:96939282-96939548(+)$1	1	81	109	23.6575
((.((((((............)))))).	chr21:46282887-46283090(-)$1	1	2	30	23.2596
(((.(((((..............)))))	chr17:80803969-80804250(+)$1	1	61	89	23.0852
((..((((.............))))..)	chr7:100172861-100173141(-)$1	1	190	218	22.9485
((.(((((..............))).))	chr7:157612004-157612315(-)$1	1	218	246	22.5274
((.(((((.............))))).)	chr6:131200938-131201152(-)$1	1	148	176	23.4349
((((((.((............)))))))	chr7:99691299-99691508(-)$1	1	155	183	22.6914
(.((((................))))))	chr16:50613042-50613290(+)$1	1	147	175	21.9534
(.....(((..............)))..	chr17:80211078-80211463(-)$1	1	166	194	21.0223
(.(.(((...............))).).	chr17:27718048-27718317(+)$1	1	93	121	19.7069
..(((.(((............)))))).	chr9:111808711-111808989(-)$1	1	13	41	25.0588
((((((((.............)))))..	chr1:29572566-29572887(+)$1	1	211	239	22.4556
.((((((((............)))))))	chr22:42298816-42299033(+)$1	1	26	54	22.1664
..((((.((................)))	chr16:87739757-87740061(-)$1	1	48	76	21.4658
..((((.((................)))	chr16:87739871-87740115(-)$1	1	102	130	21.4658
(..((((((................)))	chr20:62299224-62299567(+)$1	1	264	292	22.1930
((((((.(((...........)))))))	chr13:92003155-92003404(+)$1	1	183	211	23.8035
(..((((..............))))..)	chr7:1065536-1065777(-)$1	1	155	183	22.1729
.(((..(((................)))	chr12:691507-691782(-)$1	1	120	148	22.9816
((...((((............))))...	chr12:691207-691472(-)$1	1	54	82	24.0324
(.(((((((...........))).))))	chr22:33156547-33156846(-)$1	1	189	217	22.3221
((.(((((((...........)))))))	chr20:62572714-62572939(-)$1	1	67	95	22.7046
((((.((.((...........)).)).)	chr10:725108-725347(-)$1	1	177	205	20.4140
(.....(((.............)))...	chr5:139646474-139646691(-)$1	1	52	80	21.8434
((.((.((((...........)))).))	chr4:38869403-38869688(+)$1	1	173	201	21.5337
((.((.((((...........)))).))	chr16:28878114-28878410(+)$1	1	174	202	21.8084
((((((((((...........)))))))	chr10:424118-424435(-)$1	1	257	285	22.3502
(...(((((............)))))))	chr16:85687590-85687851(+)$1	1	176	204	23.9629
(((.(((................))).)	chr21:45734194-45734511(+)$1	1	222	250	22.4177
(((((((((...............))))	chr19:2227473-2227755(+)$1	1	233	261	19.1563
(((((((((.............))))))	chr18:76906249-76906499(+)$1	1	81	109	24.4735
.(((.(((((...........)))))))	chr7:158448231-158448541(-)$1	1	275	303	22.9076
...((((((.............))))))	chr12:131521048-131521304(+)$1	1	194	222	23.1020
(((...(((...........))))))).	chr2:219265622-219265877(+)$1	1	34	62	22.4200
..((((.((..............)))))	chr21:46282781-46283051(-)$1	1	192	220	20.7683
(((((((((............)))))))	chr1:21982768-21983014(-)$1	1	136	164	21.9061
.((((((((............)))))..	chr6:128327053-128327395(-)$1	1	192	220	24.3973

#PSSM
c : 0.17	d : 0.12	[ : 0.10	e : 0.10	! : 0.07	f : 0.07	b : 0.05	g : 0.05	# : 0.05	= : 0.05	i : 0.03	+ : 0.01	E : 0.01	h : 0.01	% : 0.01	& : 0.01	
c : 0.12	d : 0.10	! : 0.08	# : 0.07	g : 0.07	h : 0.07	f : 0.07	[ : 0.07	b : 0.05	$ : 0.05	e : 0.05	i : 0.03	= : 0.03	+ : 0.01	E : 0.01	% : 0.01	" : 0.01	& : 0.01	
d : 0.16	[ : 0.14	g : 0.10	c : 0.10	h : 0.07	f : 0.07	! : 0.07	$ : 0.05	# : 0.03	b : 0.03	i : 0.03	= : 0.03	" : 0.03	a : 0.01	e : 0.01	
f : 0.14	d : 0.14	g : 0.12	c : 0.10	[ : 0.08	h : 0.07	$ : 0.05	e : 0.05	b : 0.05	" : 0.05	i : 0.03	= : 0.03	# : 0.01	! : 0.01	
e : 0.17	d : 0.14	f : 0.10	g : 0.10	c : 0.08	h : 0.07	[ : 0.05	$ : 0.05	b : 0.05	i : 0.03	= : 0.03	" : 0.03	# : 0.01	! : 0.01	
d : 0.19	e : 0.19	f : 0.10	g : 0.10	[ : 0.07	h : 0.07	$ : 0.05	c : 0.05	i : 0.03	" : 0.03	= : 0.03	! : 0.01	b : 0.01	
e : 0.19	c : 0.19	d : 0.12	[ : 0.10	f : 0.08	g : 0.08	h : 0.07	i : 0.03	y : 0.03	" : 0.01	b : 0.01	= : 0.01	
e : 0.19	c : 0.17	d : 0.10	f : 0.08	g : 0.08	b : 0.08	h : 0.07	y : 0.05	i : 0.03	" : 0.01	x : 0.01	w : 0.01	[ : 0.01	= : 0.01	
c : 0.16	e : 0.14	b : 0.10	f : 0.08	d : 0.08	g : 0.07	y : 0.07	v : 0.07	w : 0.05	h : 0.05	i : 0.03	a : 0.01	x : 0.01	= : 0.01	
u : 0.26	v : 0.21	w : 0.16	y : 0.14	t : 0.05	x : 0.03	g : 0.03	d : 0.03	c : 0.01	b : 0.01	e : 0.01	
u : 0.26	v : 0.21	t : 0.17	w : 0.16	y : 0.14	x : 0.03	
u : 0.26	v : 0.21	t : 0.17	w : 0.16	y : 0.14	x : 0.03	
u : 0.26	v : 0.21	t : 0.17	w : 0.16	y : 0.14	x : 0.03	
u : 0.26	v : 0.21	t : 0.17	w : 0.16	y : 0.14	x : 0.03	
u : 0.26	v : 0.21	t : 0.17	w : 0.16	y : 0.14	x : 0.03	
u : 0.26	v : 0.21	t : 0.17	w : 0.16	y : 0.14	x : 0.03	
u : 0.26	v : 0.21	t : 0.17	w : 0.16	y : 0.14	x : 0.03	
u : 0.26	v : 0.21	t : 0.17	w : 0.16	y : 0.14	x : 0.03	
u : 0.26	v : 0.21	t : 0.17	w : 0.16	y : 0.14	x : 0.03	
u : 0.26	v : 0.21	t : 0.17	w : 0.16	y : 0.14	x : 0.03	
u : 0.26	v : 0.21	w : 0.16	y : 0.14	t : 0.12	x : 0.03	c : 0.03	g : 0.01	
v : 0.14	w : 0.14	y : 0.14	c : 0.10	e : 0.10	d : 0.08	g : 0.07	f : 0.03	i : 0.03	b : 0.03	x : 0.03	h : 0.03	a : 0.01	
e : 0.16	c : 0.16	d : 0.14	w : 0.10	y : 0.10	g : 0.08	f : 0.07	i : 0.03	b : 0.03	h : 0.03	3 : 0.01	x : 0.01	= : 0.01	
d : 0.17	e : 0.17	c : 0.16	f : 0.08	g : 0.08	y : 0.08	h : 0.05	i : 0.03	b : 0.03	] : 0.03	3 : 0.01	x : 0.01	= : 0.01	
d : 0.19	e : 0.19	c : 0.12	f : 0.08	g : 0.08	h : 0.07	y : 0.07	b : 0.05	i : 0.03	= : 0.03	2 : 0.01	3 : 0.01	
e : 0.19	d : 0.12	f : 0.10	c : 0.10	g : 0.08	] : 0.08	h : 0.07	2 : 0.05	b : 0.05	i : 0.03	= : 0.03	3 : 0.01	6 : 0.01	
c : 0.16	f : 0.10	g : 0.10	b : 0.10	e : 0.08	d : 0.07	h : 0.07	2 : 0.05	] : 0.05	i : 0.03	3 : 0.03	= : 0.03	5 : 0.01	a : 0.01	6 : 0.01	4 : 0.01	
c : 0.16	f : 0.10	b : 0.10	g : 0.08	] : 0.08	d : 0.08	h : 0.07	2 : 0.05	= : 0.05	5 : 0.03	i : 0.03	3 : 0.03	e : 0.03	6 : 0.01	4 : 0.01	

#score	1267.8006977798818
#seq	56
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF875QBF_GEMIN5_CDS_m3_run2.txt

#BEAR
Fbb[ccccccnnnnnccc]ccc]bb	chr5:149826302-149826575(-)$1	273	232	257	9.8766
[hhhhhhhhnnnnnhhhhhhhh22c	chr19:39337856-39338123(-)$1	267	10	35	10.5974
cccbbddddnnnnndddd4444bb]	chr17:1303301-1303550(-)$1	249	147	172	11.3296
b[ddddcccnnnnnccc]dddd]bb	chr16:29818688-29818988(+)$1	300	252	277	11.4969
!!ddddcccnnnnnccc]dddd22e	chr4:56496521-56496726(-)$1	205	151	176	11.5628
cc!!ccc[annnnna]ccc]ccc:E	chr7:56119399-56119688(+)$1	289	51	76	10.4326
hhhhhddddnnnnndddd]hhhhhh	chr16:18800280-18800541(-)$1	261	206	231	11.6349
bbccc[cccooooooccc]ccc]bb	chr11:75115614-75115838(+)$1	224	66	91	9.2837
occceeeeennnnneeeee:ggggg	chr22:21213439-21213678(+)$1	239	162	187	10.2047
d"""eeeeennnnneeeee333ddd	chr1:206858416-206858678(+)$1	262	38	63	10.9004
a[gggggggnnnnnggggggg]agg	chr11:5290979-5291203(-)$1	224	183	208	11.9996
ccc!!ddddnnnnndddd22ccc::	chr1:228327898-228328152(+)$1	254	216	241	11.2835
dd[ccc[bbnnnnnbb]ccc]dddd	chr8:146017298-146017518(-)$1	220	62	87	10.2099
ccc[eeeeennnnneeeee]ccc::	chr1:27023030-27023291(+)$1	261	140	165	10.1509
[bb!!ddddnnnnnddddbb]a]dd	chr6:168366324-168366571(+)$1	247	180	205	11.9787
!!gggggggnnnnnggggggg22cc	chr6:10724705-10724947(+)$1	242	35	60	12.3766
fccc[cccooooooccc]ccc]fff	chr8:145149912-145150135(+)$1	223	160	185	8.7988
gggg!!cccoooooocccggggggg	chr14:23235830-23236088(+)$1	258	158	183	9.6922
"ccc[ddddnnnnndddd]ccc333	chr6:27806295-27806575(+)$1	280	243	268	13.3751
fffff[cccnnnnncccffffffBB	chr22:19165221-19165460(-)$1	239	187	212	9.4688
gggggddddnnnnndddd]gggggg	chr7:99698805-99699077(-)$1	272	7	32	12.9587
=========nnnnn===========	chr7:129710478-129710756(+)$1	278	247	272	12.2972
!!ccc[cccnnnnnccc]ccc22cc	chr11:8704241-8704463(+)$1	222	36	61	12.9929
e####ddddnnnnnddddeeeeecc	chr3:10362633-10362890(-)$1	257	118	143	11.7953
"hhhhhhhhnnnnnhhhhhhhh333	chr7:155090274-155090504(+)$1	230	179	204	10.7477
eeee[ddddnnnnndddd]eeeee:	chr11:66384132-66384376(+)$1	244	133	158	11.0815
gggggg[bbnnnnnbbggggggga[	chr5:37370912-37371234(-)$1	322	137	162	11.4880
[gggggggnnnnnggggggg]cccb	chr19:917336-917650(+)$1	314	161	186	9.8372
dddd[ddddnnnnndddd]dddd::	chr11:9286493-9286779(-)$1	286	98	123	10.1813
fffbbddddnnnnndddd]bb22ff	chrX:152954119-152954371(+)$1	252	78	103	11.0015
!!a!!ddddnnnnndddd22a22dd	chr19:49611283-49611536(+)$1	253	180	205	12.7590
[ccc[ddddnnnnndddd]ccc]bb	chr16:1821061-1821359(-)$1	298	28	53	13.5100
gggggg[bbnnnnnbbgggggggee	chr18:77748217-77748596(-)$1	379	223	248	11.4210
c[bb[ddddooooooddddbb333c	chr11:46404037-46404303(+)$1	266	101	126	8.7759
hhhhh[cccnnnnnccc]hhhhhhh	chr16:18812652-18812932(-)$1	280	42	67	11.4286
eeeee!!bbnnnnnbb4444eeeee	chr1:116915970-116916237(+)$1	267	90	115	9.9745
ggg####bbnnnnnbb333gggggg	chr6:109703434-109703656(-)$1	222	84	109	11.2750
bbb[eeeeennnnneeeee]bb]bb	chr6:30690233-30690498(+)$1	265	68	93	10.5946
[dddd[cccnnnnnccc]ddddbb]	chr17:76182930-76183218(-)$1	288	242	267	11.1087
dddd[ddddnnnnnddddddddfff	chr6:3259245-3259565(+)$1	320	239	264	11.1512
hhhhhh[bbnnnnnbbhhhhhhhhb	chr6:170893438-170893742(-)$1	304	42	67	10.0347
ccc"""cccooooooccc4444ccc	chr21:35287927-35288198(-)$1	271	4	29	9.1340
[ccc[eeeeennnnneeeee22ccc	chr16:3740781-3741082(-)$1	301	164	189	9.5487
#gggggggooooooggggggg4444	chr10:106014819-106015050(+)$1	231	47	72	8.5759
ee[bbddddnnnnndddd22bb]ee	chr6:43197031-43197287(-)$1	256	197	222	11.1199
[a[a!!cccnnnnnccc22a]a]ee	chrX:133594141-133594455(+)$1	314	257	282	12.7236
[eeeee[bbnnnnnbbeeeee]fff	chr12:62996658-62996957(+)$1	299	85	110	10.3466
hhhhh[cccnnnnnccchhhhhhhh	chr21:34922667-34922920(+)$1	253	31	56	11.2774
""gggggggooooooggggggg]dd	chr2:217365959-217366165(+)$1	206	29	54	8.9512
b####ddddoooooodddd4444bb	chr12:56120975-56121226(-)$1	251	202	227	8.5677
[ccc[ddddnnnnndddd]ccc]bb	chr9:131790306-131790651(-)$1	345	260	285	13.5100
"bb[a[cccnnnnnccc]a]bb]dd	chr4:152020677-152020963(+)$1	286	39	64	11.9137
eee[eeeeennnnneeeee]eeeee	chr18:158467-158820(+)$1	353	80	105	10.6359
ggggg[cccooooooccc]gggggg	chr12:49523377-49523606(-)$1	229	100	125	9.7378

#otherMatches

#Seq PSSM
GCUGGGUGGUAGAAAACCUGCUGGG	chr5:149826302-149826575(-)$1	273	232	257	9.8766
CAGCAAGAAAAUAAUUCUUGUUUUU	chr19:39337856-39338123(-)$1	267	10	35	10.5974
UGGAUGAUCGAGAGGAUCUGGUGUA	chr17:1303301-1303550(-)$1	249	147	172	11.3296
CAUGCCUGCGAGAUGUGUGGCAAGG	chr16:29818688-29818988(+)$1	300	252	277	11.4969
GAAUGAGGUAAGGAACUAUCAUCAC	chr4:56496521-56496726(-)$1	205	151	176	11.5628
CUUUUCCAGAAGACCCGGAUAGUUC	chr7:56119399-56119688(+)$1	289	51	76	10.4326
UCGUCCGGUUUCUCACUGUGAUGAU	chr16:18800280-18800541(-)$1	261	206	231	11.6349
CCCAGCUGUGUGCUAACAACUGUGG	chr11:75115614-75115838(+)$1	224	66	91	9.2837
CGAGUCCGAGAAGGUUGGGGUCGCC	chr22:21213439-21213678(+)$1	239	162	187	10.2047
GCCGGCUCCAGCCCGGAGCGAACUU	chr1:206858416-206858678(+)$1	262	38	63	10.9004
UGGUUCUCAAUGCAUGGGAAUGAAG	chr11:5290979-5291203(-)$1	224	183	208	11.9996
GGUCCCUGCGCUUUGCGGUCGCCCA	chr1:228327898-228328152(+)$1	254	216	241	11.2835
UGAAGCACCGUAAAGGCGCUGCGCG	chr8:146017298-146017518(-)$1	220	62	87	10.2099
ggGCCCGGCGCGGAGCCGGACCUGA	chr1:27023030-27023291(+)$1	261	140	165	10.1509
GCGCAGGUUGCUGGAGCCCGAGGCG	chr6:168366324-168366571(+)$1	247	180	205	11.9787
UUCUUUCUGACUGCUGGAGAGCUGU	chr6:10724705-10724947(+)$1	242	35	60	12.3766
gugcccggggUCUGCUGUGCAGCGC	chr8:145149912-145150135(+)$1	223	160	185	8.7988
GGCAGAGCACCGGGAUGCUGCCCUG	chr14:23235830-23236088(+)$1	258	158	183	9.6922
CGCAAGGAGAGCUACUCCGUGUACG	chr6:27806295-27806575(+)$1	280	243	268	13.3751
CGUGGUGGUCGUGUGCCCCAUGGAG	chr22:19165221-19165460(-)$1	239	187	212	9.4688
UUGGCCCGCACGCAGUGGCGCCGGU	chr7:99698805-99699077(-)$1	272	7	32	12.9587
CUUUUCCUUGGGAGGAGGAAAGGCA	chr7:129710478-129710756(+)$1	278	247	272	12.2972
AAGUGAGGCGUUUUGCCCCGCCCCC	chr11:8704241-8704463(+)$1	222	36	61	12.9929
CCACGUCCGAGACCUGGAGCAGCCA	chr3:10362633-10362890(-)$1	257	118	143	11.7953
CGGUUGAAAGUACUUUUCAGCCUAU	chr7:155090274-155090504(+)$1	230	179	204	10.7477
CGGCACGGUCAUGAGCUGCGCCGUC	chr11:66384132-66384376(+)$1	244	133	158	11.0815
GUGUCUACGAUUUCCGAGAUGCCGU	chr5:37370912-37371234(-)$1	322	137	162	11.4880
CGGCCAUGCACACCGUGGCUACGUC	chr19:917336-917650(+)$1	314	161	186	9.8372
gggcgcccggguugcgggggcUCGG	chr11:9286493-9286779(-)$1	286	98	123	10.1813
CGCCAGAUGGACUUCAUCAUGUCGU	chrX:152954119-152954371(+)$1	252	78	103	11.0015
agcgagcgcgagcggcgccgggacc	chr19:49611283-49611536(+)$1	253	180	205	12.7590
CGGCGCUUCGAGAGGAAGGGCUUCA	chr16:1821061-1821359(-)$1	298	28	53	13.5100
ACCUGCACAACGGCUGGCAGGUGGA	chr18:77748217-77748596(-)$1	379	223	248	11.4210
GACUGCAAGUACAAGUUUGAGAACU	chr11:46404037-46404303(+)$1	266	101	126	8.7759
GCCUGCGGGGCGUUCCCUCGGGUUG	chr16:18812652-18812932(-)$1	280	42	67	11.4286
GGGAGCUGCUCUGUGCUUUUCUCUC	chr1:116915970-116916237(+)$1	267	90	115	9.9745
CUCUCCCGCUCACUGCUUUGGGCCG	chr6:109703434-109703656(-)$1	222	84	109	11.2750
CCCCCUCGGCAGUUCUGGGAGGUGA	chr6:30690233-30690498(+)$1	265	68	93	10.5946
GAGGUGGUCGUGGUGAUAGCCUGUG	chr17:76182930-76183218(-)$1	288	242	267	11.1087
gggccUGCGCGAGCUGCAGCCCCCC	chr6:3259245-3259565(+)$1	320	239	264	11.1512
GGGCUGCGCCCCACGCCAGCCCGCG	chr6:170893438-170893742(-)$1	304	42	67	10.0347
GCGCCUGCGGCCUGACGCCCUACGC	chr21:35287927-35288198(-)$1	271	4	29	9.1340
UUGCAGGCAGGACGACUGUUCAGCA	chr16:3740781-3741082(-)$1	301	164	189	9.5487
CGGGGGGUCUCGACACCUCUCUGGG	chr10:106014819-106015050(+)$1	231	47	72	8.5759
CAGGACGCUGUACGAGCGGAUCGUG	chr6:43197031-43197287(-)$1	256	197	222	11.1199
GUUCAGGCCCACGCGGCAGGUGGCG	chrX:133594141-133594455(+)$1	314	257	282	12.7236
CGUUUUCGCCUCCUGUAGAGCUGAA	chr12:62996658-62996957(+)$1	299	85	110	10.3466
GCGACCUCCAUGCCGGAGUUGCAGG	chr21:34922667-34922920(+)$1	253	31	56	11.2774
GAGGCAGAUUUACUUAUUUGCCAUU	chr2:217365959-217366165(+)$1	206	29	54	8.9512
GUCAUCAUCGCAGUGGGUGUCUUCC	chr12:56120975-56121226(-)$1	251	202	227	8.5677
UUCUUCACCCGGGCGGUGCAGGUGA	chr9:131790306-131790651(-)$1	345	260	285	13.5100
AGGUCACGUAGACGGCGCGCCCCGC	chr4:152020677-152020963(+)$1	286	39	64	11.9137
GGCCGGUUUGAAUGAGACUCGUCGC	chr18:158467-158820(+)$1	353	80	105	10.6359
GCGUGAGUGCAUCUCCAUCCACGUU	chr12:49523377-49523606(-)$1	229	100	125	9.7378

#DB
)((.((((((.....))).))).))	chr5:149826302-149826575(-)$1	1	232	257	9.8766
.((((((((.....))))))))..)	chr19:39337856-39338123(-)$1	1	10	35	10.5974
(((((((((.....))))....)).	chr17:1303301-1303550(-)$1	1	147	172	11.3296
(.(((((((.....))).)))).))	chr16:29818688-29818988(+)$1	1	252	277	11.4969
..(((((((.....))).))))..)	chr4:56496521-56496726(-)$1	1	151	176	11.5628
((..(((.(.....).))).))).)	chr7:56119399-56119688(+)$1	1	51	76	10.4326
(((((((((.....)))).))))))	chr16:18800280-18800541(-)$1	1	206	231	11.6349
(((((.(((......))).))).))	chr11:75115614-75115838(+)$1	1	66	91	9.2837
.)))(((((.....))))).(((((	chr22:21213439-21213678(+)$1	1	162	187	10.2047
(...(((((.....)))))...)))	chr1:206858416-206858678(+)$1	1	38	63	10.9004
(.(((((((.....))))))).)((	chr11:5290979-5291203(-)$1	1	183	208	11.9996
(((..((((.....))))..)))..	chr1:228327898-228328152(+)$1	1	216	241	11.2835
((.(((.((.....)).))).))))	chr8:146017298-146017518(-)$1	1	62	87	10.2099
(((.(((((.....))))).)))..	chr1:27023030-27023291(+)$1	1	140	165	10.1509
.((..((((.....)))))).).))	chr6:168366324-168366571(+)$1	1	180	205	11.9787
..(((((((.....)))))))..))	chr6:10724705-10724947(+)$1	1	35	60	12.3766
((((.(((......))).))).)))	chr8:145149912-145150135(+)$1	1	160	185	8.7988
((((..(((......))))))))))	chr14:23235830-23236088(+)$1	1	158	183	9.6922
.(((.((((.....)))).)))...	chr6:27806295-27806575(+)$1	1	243	268	13.3751
(((((.(((.....)))))))))))	chr22:19165221-19165460(-)$1	1	187	212	9.4688
(((((((((.....)))).))))))	chr7:99698805-99699077(-)$1	1	7	32	12.9587
(((((((((.....)))))))))))	chr7:129710478-129710756(+)$1	1	247	272	12.2972
..(((.(((.....))).)))..))	chr11:8704241-8704463(+)$1	1	36	61	12.9929
(....((((.....)))))))))((	chr3:10362633-10362890(-)$1	1	118	143	11.7953
.((((((((.....))))))))...	chr7:155090274-155090504(+)$1	1	179	204	10.7477
((((.((((.....)))).))))).	chr11:66384132-66384376(+)$1	1	133	158	11.0815
((((((.((.....)))))))))(.	chr5:37370912-37371234(-)$1	1	137	162	11.4880
.(((((((.....))))))).)))(	chr19:917336-917650(+)$1	1	161	186	9.8372
((((.((((.....)))).))))..	chr11:9286493-9286779(-)$1	1	98	123	10.1813
(((((((((.....)))).))..))	chrX:152954119-152954371(+)$1	1	78	103	11.0015
..(..((((.....))))..)..))	chr19:49611283-49611536(+)$1	1	180	205	12.7590
.(((.((((.....)))).))).))	chr16:1821061-1821359(-)$1	1	28	53	13.5100
((((((.((.....)))))))))((	chr18:77748217-77748596(-)$1	1	223	248	11.4210
(.((.((((......))))))...)	chr11:46404037-46404303(+)$1	1	101	126	8.7759
(((((.(((.....))).)))))))	chr16:18812652-18812932(-)$1	1	42	67	11.4286
(((((..((.....))....)))))	chr1:116915970-116916237(+)$1	1	90	115	9.9745
(((....((.....))...))))))	chr6:109703434-109703656(-)$1	1	84	109	11.2750
(((.(((((.....))))).)).))	chr6:30690233-30690498(+)$1	1	68	93	10.5946
.((((.(((.....))).)))))).	chr17:76182930-76183218(-)$1	1	242	267	11.1087
((((.((((.....))))))))(((	chr6:3259245-3259565(+)$1	1	239	264	11.1512
((((((.((.....)))))))))))	chr6:170893438-170893742(-)$1	1	42	67	10.0347
(((...(((......)))....)))	chr21:35287927-35288198(-)$1	1	4	29	9.1340
.(((.(((((.....)))))..)))	chr16:3740781-3741082(-)$1	1	164	189	9.5487
.(((((((......)))))))....	chr10:106014819-106015050(+)$1	1	47	72	8.5759
((.((((((.....))))..)).))	chr6:43197031-43197287(-)$1	1	197	222	11.1199
.(.(..(((.....)))..).).))	chrX:133594141-133594455(+)$1	1	257	282	12.7236
.(((((.((.....))))))).)))	chr12:62996658-62996957(+)$1	1	85	110	10.3466
(((((.(((.....)))))))))))	chr21:34922667-34922920(+)$1	1	31	56	11.2774
..(((((((......))))))).))	chr2:217365959-217366165(+)$1	1	29	54	8.9512
(....((((......))))....))	chr12:56120975-56121226(-)$1	1	202	227	8.5677
.(((.((((.....)))).))).))	chr9:131790306-131790651(-)$1	1	260	285	13.5100
.((.(.(((.....))).).)).))	chr4:152020677-152020963(+)$1	1	39	64	11.9137
(((.(((((.....))))).)))))	chr18:158467-158820(+)$1	1	80	105	10.6359
(((((.(((......))).))))))	chr12:49523377-49523606(-)$1	1	100	125	9.7378

#PSSM
[ : 0.16	c : 0.11	g : 0.11	e : 0.09	b : 0.07	! : 0.07	h : 0.07	d : 0.07	" : 0.07	f : 0.05	F : 0.01	o : 0.01	a : 0.01	= : 0.01	# : 0.01	
c : 0.20	g : 0.14	h : 0.11	b : 0.09	e : 0.09	! : 0.07	d : 0.07	[ : 0.05	" : 0.03	f : 0.03	# : 0.03	= : 0.01	a : 0.01	
c : 0.22	g : 0.20	h : 0.11	b : 0.09	d : 0.09	e : 0.07	[ : 0.05	f : 0.03	# : 0.03	! : 0.01	" : 0.01	= : 0.01	a : 0.01	
g : 0.18	c : 0.16	h : 0.11	[ : 0.09	d : 0.09	b : 0.07	! : 0.07	# : 0.05	e : 0.05	" : 0.03	f : 0.01	= : 0.01	a : 0.01	
g : 0.16	[ : 0.16	e : 0.12	h : 0.11	c : 0.09	! : 0.09	b : 0.05	d : 0.05	# : 0.05	f : 0.01	= : 0.01	" : 0.01	a : 0.01	
d : 0.35	[ : 0.14	e : 0.12	g : 0.12	c : 0.07	h : 0.05	! : 0.05	= : 0.01	# : 0.01	" : 0.01	
d : 0.31	c : 0.29	e : 0.11	g : 0.09	[ : 0.09	h : 0.03	= : 0.01	! : 0.01	# : 0.01	
d : 0.31	c : 0.27	b : 0.12	e : 0.11	g : 0.09	h : 0.03	[ : 0.01	= : 0.01	
d : 0.31	c : 0.25	b : 0.12	e : 0.11	g : 0.05	h : 0.03	o : 0.03	a : 0.01	= : 0.01	n : 0.01	
n : 0.79	o : 0.16	c : 0.01	e : 0.01	
n : 0.83	o : 0.16	
n : 0.83	o : 0.16	
n : 0.83	o : 0.16	
n : 0.81	o : 0.16	g : 0.01	
d : 0.27	c : 0.18	o : 0.12	b : 0.12	e : 0.09	g : 0.07	n : 0.03	h : 0.03	a : 0.01	= : 0.01	
d : 0.31	c : 0.27	b : 0.12	e : 0.11	g : 0.09	h : 0.03	] : 0.01	= : 0.01	
d : 0.31	c : 0.29	e : 0.12	g : 0.12	h : 0.05	] : 0.01	= : 0.01	4 : 0.01	3 : 0.01	
d : 0.31	c : 0.12	] : 0.12	e : 0.12	g : 0.12	h : 0.07	f : 0.01	= : 0.01	4 : 0.01	3 : 0.01	2 : 0.01	
] : 0.20	e : 0.14	g : 0.14	d : 0.11	h : 0.09	c : 0.07	2 : 0.07	4 : 0.05	b : 0.01	f : 0.01	= : 0.01	3 : 0.01	a : 0.01	
g : 0.20	c : 0.14	h : 0.11	d : 0.09	] : 0.09	4 : 0.07	e : 0.07	2 : 0.05	b : 0.05	: : 0.01	3 : 0.01	f : 0.01	= : 0.01	a : 0.01	
g : 0.20	c : 0.18	h : 0.11	d : 0.09	e : 0.09	b : 0.09	] : 0.07	4 : 0.05	3 : 0.01	f : 0.01	= : 0.01	a : 0.01	2 : 0.01	
c : 0.16	g : 0.14	h : 0.11	d : 0.11	2 : 0.09	4 : 0.07	e : 0.07	] : 0.05	b : 0.05	3 : 0.03	a : 0.03	f : 0.01	= : 0.01	
] : 0.20	g : 0.12	2 : 0.11	c : 0.11	h : 0.07	f : 0.07	e : 0.07	d : 0.05	3 : 0.05	b : 0.03	4 : 0.03	a : 0.01	= : 0.01	
b : 0.16	g : 0.11	d : 0.11	c : 0.11	e : 0.11	: : 0.07	h : 0.07	f : 0.07	3 : 0.05	2 : 0.03	B : 0.01	= : 0.01	a : 0.01	4 : 0.01	
b : 0.16	c : 0.12	e : 0.11	g : 0.11	d : 0.11	: : 0.07	f : 0.07	h : 0.05	] : 0.03	3 : 0.03	E : 0.01	B : 0.01	= : 0.01	[ : 0.01	4 : 0.01	

#score	589.112909172131
#seq	54
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF509AKB_TBRG4_UTR_m2_run2.txt

#BEAR
!!ddddcccmmmmccc4444d	chr7:111928873-111929110(+)$1	237	29	50	9.1697
dd"""ddddmmmmdddd4444	chr4:174253120-174253335(-)$1	215	162	183	8.3379
iiiiiiiiinnnnniiiiiii	chr4:110745473-110745739(+)$1	266	85	106	8.0073
iiiiiiiiimmmmiiiiiiii	chr5:43290991-43291285(-)$1	294	158	179	11.0431
ccc[ccc[bblllbb]ccc]c	chr17:27047468-27047715(+)$1	247	33	54	7.5627
c[gggggggmmmmgggggggc	chr20:1165115-1165373(-)$1	258	105	126	10.1282
iiiiiiiiillliiiiiiiii	chr6:32148374-32148640(+)$1	266	108	129	9.2389
=========mmmm========	chr6:31698293-31698552(-)$1	259	42	63	11.4471
"""ffffffmmmmffffff33	chr8:102217355-102217630(-)$1	275	66	87	10.1166
ccc[bb[bbmmmmbb]bbccc	chr22:19418955-19419219(-)$1	264	136	157	8.2968
hhh"""cccmmmmccc]hhhh	chr6:34664376-34664664(-)$1	288	181	202	8.9968
iiiieeeeemmmmeeeee22i	chr5:179248579-179248804(+)$1	225	143	164	8.8007
gggccccccmmmmccc]ccc]	chr18:3450121-3450389(+)$1	268	202	223	9.9233
dd[ffffffmmmmffffff]d	chr11:611844-612083(+)$1	239	63	84	9.1539
$$$ffffffmmmmffffff33	chr6:86352569-86352817(-)$1	248	134	155	9.3624

#otherMatches

#Seq PSSM
agacaagcucucaaguccauu	chr7:111928873-111929110(+)$1	237	29	50	9.1697
GCUAAGAAUGUGAAUUCAAGU	chr4:174253120-174253335(-)$1	215	162	183	8.3379
UUUUCUCUUAAUCAGGGAGAG	chr4:110745473-110745739(+)$1	266	85	106	8.0073
GUUAUGUAAAUUUUUAUGUGA	chr5:43290991-43291285(-)$1	294	158	179	11.0431
UGCUACUUUGUUUCAUAGUCG	chr17:27047468-27047715(+)$1	247	33	54	7.5627
uguacgcgcgugugcgugugA	chr20:1165115-1165373(-)$1	258	105	126	10.1282
CAGAGUCUAAUAUGGAUUCUG	chr6:32148374-32148640(+)$1	266	108	129	9.2389
UCCUGGAGCACUUGUUCCGGG	chr6:31698293-31698552(-)$1	259	42	63	11.4471
gggucgcgaggggucgcgggg	chr8:102217355-102217630(-)$1	275	66	87	10.1166
ggaagcggcggcgguggcUCC	chr22:19418955-19419219(-)$1	264	136	157	8.2968
CGCGAAGCUAGCUAGCAGCGG	chr6:34664376-34664664(-)$1	288	181	202	8.9968
UUUCCCAUUGGCAAGUGGACG	chr5:179248579-179248804(+)$1	225	143	164	8.8007
GGGCGCCUGGGAUCAGAGCGU	chr18:3450121-3450389(+)$1	268	202	223	9.9233
GGGGGGCAUCACCAUGCCUGC	chr11:611844-612083(+)$1	239	63	84	9.1539
GCGCGCUCGGAGGCGAGUGGA	chr6:86352569-86352817(-)$1	248	134	155	9.3624

#DB
..(((((((....)))....)	chr7:111928873-111929110(+)$1	1	29	50	9.1697
((...((((....))))....	chr4:174253120-174253335(-)$1	1	162	183	8.3379
(((((((((.....)))))))	chr4:110745473-110745739(+)$1	1	85	106	8.0073
(((((((((....))))))))	chr5:43290991-43291285(-)$1	1	158	179	11.0431
(((.(((.((...)).))).)	chr17:27047468-27047715(+)$1	1	33	54	7.5627
(.(((((((....))))))))	chr20:1165115-1165373(-)$1	1	105	126	10.1282
(((((((((...)))))))))	chr6:32148374-32148640(+)$1	1	108	129	9.2389
(((((((((....))))))))	chr6:31698293-31698552(-)$1	1	42	63	11.4471
...((((((....))))))..	chr8:102217355-102217630(-)$1	1	66	87	10.1166
(((.((.((....)).)))))	chr22:19418955-19419219(-)$1	1	136	157	8.2968
(((...(((....))).))))	chr6:34664376-34664664(-)$1	1	181	202	8.9968
(((((((((....)))))..)	chr5:179248579-179248804(+)$1	1	143	164	8.8007
(((((((((....))).))).	chr18:3450121-3450389(+)$1	1	202	223	9.9233
((.((((((....)))))).)	chr11:611844-612083(+)$1	1	63	84	9.1539
...((((((....))))))..	chr6:86352569-86352817(-)$1	1	134	155	9.3624

#PSSM
i : 0.26	c : 0.20	d : 0.13	! : 0.06	= : 0.06	" : 0.06	h : 0.06	g : 0.06	$ : 0.06	
i : 0.26	d : 0.13	c : 0.13	! : 0.06	[ : 0.06	= : 0.06	" : 0.06	h : 0.06	g : 0.06	$ : 0.06	
i : 0.26	" : 0.13	c : 0.13	g : 0.13	d : 0.06	= : 0.06	h : 0.06	[ : 0.06	$ : 0.06	
i : 0.26	f : 0.20	" : 0.13	[ : 0.13	d : 0.06	g : 0.06	= : 0.06	c : 0.06	
i : 0.20	f : 0.20	" : 0.13	c : 0.13	d : 0.06	g : 0.06	= : 0.06	b : 0.06	e : 0.06	
i : 0.20	f : 0.20	d : 0.13	c : 0.13	g : 0.06	= : 0.06	b : 0.06	" : 0.06	e : 0.06	
c : 0.26	i : 0.20	f : 0.20	d : 0.06	g : 0.06	= : 0.06	[ : 0.06	e : 0.06	
c : 0.20	i : 0.20	f : 0.20	d : 0.06	[ : 0.06	g : 0.06	= : 0.06	b : 0.06	e : 0.06	
c : 0.20	i : 0.20	f : 0.20	b : 0.13	d : 0.06	g : 0.06	= : 0.06	e : 0.06	
m : 0.79	n : 0.06	b : 0.06	l : 0.06	
m : 0.79	l : 0.13	n : 0.06	
m : 0.79	l : 0.13	n : 0.06	
m : 0.79	n : 0.06	l : 0.06	i : 0.06	
c : 0.20	f : 0.20	i : 0.13	b : 0.13	d : 0.06	n : 0.06	g : 0.06	= : 0.06	e : 0.06	
c : 0.20	i : 0.20	f : 0.20	b : 0.13	d : 0.06	g : 0.06	= : 0.06	e : 0.06	
c : 0.20	i : 0.20	f : 0.20	] : 0.13	d : 0.06	g : 0.06	= : 0.06	e : 0.06	
i : 0.20	f : 0.20	] : 0.13	4 : 0.06	d : 0.06	c : 0.06	g : 0.06	= : 0.06	b : 0.06	e : 0.06	
i : 0.20	f : 0.20	4 : 0.13	c : 0.13	g : 0.06	= : 0.06	b : 0.06	h : 0.06	e : 0.06	
i : 0.20	c : 0.20	f : 0.20	4 : 0.13	g : 0.06	= : 0.06	h : 0.06	2 : 0.06	
i : 0.20	4 : 0.13	] : 0.13	3 : 0.13	c : 0.13	g : 0.06	= : 0.06	h : 0.06	2 : 0.06	
i : 0.26	c : 0.20	d : 0.13	3 : 0.13	4 : 0.06	= : 0.06	h : 0.06	] : 0.06	

#score	139.58624148191333
#seq	15
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF400KYS_AQR_UTR_m3_run1.txt

#BEAR
eeee!!a[ddddllldddd]a22eeeee]	chr22:50699955-50700208(-)$1	253	94	123	11.1441
:dddd!!ddddoooooodddd333dddd:	chr14:21490509-21490790(-)$1	281	113	142	11.3994
ddd[ccc[ddddoooooodddd]ccc]dd	chr16:2569099-2569350(+)$1	251	217	246	12.4841
###dddd"""ddddllldddd]dddd333	chr17:76119959-76120170(-)$1	211	89	118	10.8775
eeeee"""cccannnnna]ccc4444eee	chr19:12662023-12662245(-)$1	222	41	70	12.7362
c!!eeeeeddddnnnnndddd22eeeee2	chr17:73843445-73843669(-)$1	224	5	34	15.7818
cc[a####ddddnnnnndddd55555a]c	chr15:41043471-41043724(-)$1	253	208	237	12.7813
[bb$$$$$ddddnnnnndddd22bbgggg	chr16:89806262-89806500(-)$1	238	48	77	14.5718
ccc[bba[ddddnnnnndddd]a]bb]cc	chr19:51305381-51305650(-)$1	269	59	88	15.5474
eeeeccc[ddddnnnnnddddccc4444e	chr17:79639083-79639329(+)$1	246	171	200	15.4153
eeeeecccddddoooooodddd]ccc]ee	chr3:184070364-184070628(-)$1	264	106	135	12.0049
eeeee"""ddddnnnnndddd]eeeee::	chr17:27240747-27240998(-)$1	251	219	248	14.1893
!dddd[ccccccnnnnnccc22cccdddd	chr3:12632178-12632399(-)$1	221	72	101	12.1245
"""ccc[eeeeennnnneeeee]cccggg	chr2:26467253-26467499(-)$1	246	128	157	13.2740
dd[dddd[ddddooooooddddddddddd	chr9:116137716-116137982(-)$1	266	165	194	11.3370
a[bb[a[eeeeennnnneeeee]abb22a	chr1:65886322-65886535(+)$1	213	126	155	11.7753
eee[ccc[ddddnnnnndddd22ccc333	chr15:64404782-64404996(+)$1	214	77	106	16.9136
hhhhh"""ddddnnnnndddd333hhhhh	chr1:6692316-6692592(+)$1	276	44	73	15.2598
ccc[bb!!ddddmmmmdddd333bb]ccc	chr12:122613672-122613880(+)$1	208	175	204	10.8692
ccc[eeeeecccnnnnnccc]eeeee]cc	chr17:61919649-61919919(-)$1	270	231	260	12.0264
[dddd[a!!cccnnnnnccc22a]dddd]	chr6:7895176-7895443(-)$1	267	222	251	12.9574
bb!!ccc[ddddnnnnndddd>>>>>>>>	chr14:100827884-100828146(-)$1	262	61	90	14.4603
ggggg[aeeeeennnnneeeee]a]gggg	chr16:21636351-21636618(+)$1	267	85	114	12.5686
c!!dddd[ddddnnnnndddddddd22cc	chr15:43348356-43348642(-)$1	286	186	215	15.1828
b[eeeee[ddddnnnnnddddeeeee]bb	chr17:25633854-25634088(+)$1	234	23	52	14.7084
c!!eeeeeddddnnnnndddd333eeeee	chr11:122929630-122929859(-)$1	229	182	211	16.1923
ccc[bb!!cccooooooccc333bb]ccc	chr6:30296713-30296986(+)$1	273	194	223	10.5504
"dddd[a[ddddnnnnnddddadddd]hh	chr19:1581120-1581406(-)$1	286	121	150	15.2958
"""bb"""ddddnnnnndddd]bb333dd	chr19:48830636-48830904(+)$1	268	151	180	15.6584
ffffccc[ddddnnnnndddd]ccc]fff	chr6:136590426-136590682(-)$1	256	201	230	15.4530
ffffff!!ddddnnnnndddd]ffffff2	chr17:34136479-34136709(+)$1	230	177	206	15.2252
a[dddd[eeeeennnnneeeee]dddd]a	chr1:46656006-46656255(-)$1	249	110	139	12.6455
cc[ccc!!ddddoooooodddd]cccccc	chr10:30723206-30723413(+)$1	207	2	31	13.2614
bbffffff[cccnnnnnccc333ffffff	chr17:26521632-26521879(+)$1	247	119	148	11.6414
"""dddd[ddddnnnnndddddddd22ii	chr22:41979958-41980215(-)$1	257	97	126	15.0844
c[ffffffddddnnnnndddd]ffffffc	chrX:153647811-153648121(+)$1	310	81	110	14.5741
c[dddd[ddddoooooodddd22dddd]c	chr2:130918549-130918859(-)$1	310	193	222	12.6860
a####dddd[ddddllldddd]dddd444	chr16:72144872-72145117(+)$1	245	75	104	10.4632
:eeeee!!ddddnnnnndddd333eeeee	chr2:216177246-216177490(+)$1	244	81	110	15.8806
""ccc!!eeeeennnnneeeee333ccc2	chr19:18643967-18644180(-)$1	213	81	110	13.6852
gggggg!!ddddnnnnndddd]ggggggg	chr1:154245149-154245394(+)$1	245	29	58	16.0294
eee[eeeeecccnnnnnccc]eeeee]ee	chr5:137515206-137515477(+)$1	271	227	256	11.6818
ffffff"""ddddllldddd333ffffff	chr5:137878470-137878772(-)$1	302	9	38	10.8842
!!ccc"""ddddnnnnndddd333ccc22	chr6:36937496-36937751(-)$1	255	127	156	17.4759
fffffff[ddddnnnnndddd]ffffff3	chr13:25881985-25882196(+)$1	211	36	65	14.9253
bb[ccc[ddddoooooodddd22cccbb]	chr2:174828777-174829016(-)$1	239	170	199	12.2255
''ccc[a[ddddnnnnndddd]a]ccc66	chr16:67200014-67200361(+)$1	347	18	47	14.5694

#otherMatches

#Seq PSSM
CUGGGACAUCCCUGAGGGAAGGGCCGGGA	chr22:50699955-50700208(-)$1	253	94	123	11.1441
UGGUGCCCUGUUUUCCUGCAGACUCACUC	chr14:21490509-21490790(-)$1	281	113	142	11.3994
GUCAUGGCUGGCAUCAUCGCCAUCUACGG	chr16:2569099-2569350(+)$1	251	217	246	12.4841
CCUGGUGUACAGGUAAUGCCUCCACCUCA	chr17:76119959-76120170(-)$1	211	89	118	10.8775
CCUGCACAGGCCGGAGAGAGCCGUAGGCA	chr19:12662023-12662245(-)$1	222	41	70	12.7362
GACGGGGCCAUGGGAUACGUGCAGCCCCC	chr17:73843445-73843669(-)$1	224	5	34	15.7818
AGGUAAGAGUAUAAUAAAUACAGAAGAGU	chr15:41043471-41043724(-)$1	253	208	237	12.7813
UAGAGAAGAGGAAGAUAUCCUGGCUGGCA	chr16:89806262-89806500(-)$1	238	48	77	14.5718
GGGGCCCCAGUUUUAAUGGCUUGUGGACU	chr19:51305381-51305650(-)$1	269	59	88	15.5474
cuggacacggugggucacaccuguaaucc	chr17:79639083-79639329(+)$1	246	171	200	15.4153
GAGUGGCUGGAGCCUGUCCUCCUAGCUUG	chr3:184070364-184070628(-)$1	264	106	135	12.0049
CCCCUCAAGAGUUGAGUAUUCCAGGGGGA	chr17:27240747-27240998(-)$1	251	219	248	14.1893
ACAUUGCCCGGCAGACGGCUCAGGGAAUG	chr3:12632178-12632399(-)$1	221	72	101	12.1245
ACCUCCGGGCAGAACUCCUGCCGGGACUG	chr2:26467253-26467499(-)$1	246	128	157	13.2740
UCAUGGUAcaguggaagaacuggccagag	chr9:116137716-116137982(-)$1	266	165	194	11.3370
GUCGUGUGGUGGGGUUGCCACCUCCGUUC	chr1:65886322-65886535(+)$1	213	126	155	11.7753
AAGAGCCACAGGAUCUCUUUGCAGGCAAG	chr15:64404782-64404996(+)$1	214	77	106	16.9136
GUUGCCACUCCCCUAGAGGGACAAGUAGC	chr1:6692316-6692592(+)$1	276	44	73	15.2598
AGGCGGUAGGCUCCACAGCCGCCCCACCU	chr12:122613672-122613880(+)$1	208	175	204	10.8692
CCGGGACCCUCGGGCUGCGGCGGGUCGCG	chr17:61919649-61919919(-)$1	270	231	260	12.0264
GGGUCACUCUAGAGGAGCUGUUGGGACCG	chr6:7895176-7895443(-)$1	267	222	251	12.9574
GACAAGCAGUGCAAAAGGCAUAGACUACG	chr14:100827884-100828146(-)$1	262	61	90	14.4603
GUAAGUGUGGUCAGUCAGGCUAGCUCUUA	chr16:21636351-21636618(+)$1	267	85	114	12.5686
GAACAAUGUUAGAAUCACUAAGUUGGGCU	chr15:43348356-43348642(-)$1	286	186	215	15.1828
UAUGCUGUGUUCAGUCGGAGCCAGUAAAG	chr17:25633854-25634088(+)$1	234	23	52	14.7084
auucguaguuuccaccagaaagucuuaug	chr11:122929630-122929859(-)$1	229	182	211	16.1923
AAUGGAGAAACAAAGAGGUUGAAUUGAUU	chr6:30296713-30296986(+)$1	273	194	223	10.5504
UGUCCACUGCCUGGCAGGGGUGGGACCUG	chr19:1581120-1581406(-)$1	286	121	150	15.2958
CUCUCCCUGGGAAAGAGUCCCUGAAUCUC	chr19:48830636-48830904(+)$1	268	151	180	15.6584
AAUGUUUAAAUUUAAACAAUUAAAAUUAU	chr6:136590426-136590682(-)$1	256	201	230	15.4530
AGGGCCCUGAGGAGAAGCCUCCGGCCCUG	chr17:34136479-34136709(+)$1	230	177	206	15.2252
GGUAUGGCCUAGGACAAUUGGGGUGUAGC	chr1:46656006-46656255(-)$1	249	110	139	12.6455
GCGUGCUCGGCUCCCACAGGCCUGCAGCC	chr10:30723206-30723413(+)$1	207	2	31	13.2614
UGUAAUUUUACUAAUGAAGUUUUAAAUUA	chr17:26521632-26521879(+)$1	247	119	148	11.6414
UUUGAAUUCAGGGCCGUUCUGGUUCUCUC	chr22:41979958-41980215(-)$1	257	97	126	15.0844
UACCAGAAGGGGAUGGACUUCAUUUUGGA	chrX:153647811-153648121(+)$1	310	81	110	14.5741
GAGGCUAGUUCCAAGCAGAACGAAGCCCC	chr2:130918549-130918859(-)$1	310	193	222	12.6860
GAGAAGCGCAGCCCCCUGGGCAGUGUCAG	chr16:72144872-72145117(+)$1	245	75	104	10.4632
GAUGCUGGUCUGGCAGUCAGGUAAGGCAU	chr2:216177246-216177490(+)$1	244	81	110	15.8806
AGCUGGAACCUUCCAACAAGGUGAGCAGG	chr19:18643967-18644180(-)$1	213	81	110	13.6852
GGUUCGCGUCCCAGUACGGGAAUGAGCCU	chr1:154245149-154245394(+)$1	245	29	58	16.0294
CCAUGUUUGAGUCCACAGCUGCAGAUUUG	chr5:137515206-137515477(+)$1	271	227	256	11.6818
CCGGUGACCUUUGUGGCGAGCUGCACCGG	chr5:137878470-137878772(-)$1	302	9	38	10.8842
GCUAAGUGUGGGUUUAUUUUAAGAUUAUA	chr6:36937496-36937751(-)$1	255	127	156	17.4759
UUUUGGAACCGGGCUCUUUGGAUCUAAAC	chr13:25881985-25882196(+)$1	211	36	65	14.9253
ccgccgcccgccugcccgcggaccgggga	chr2:174828777-174829016(-)$1	239	170	199	12.2255
CUGGCCGGCCAGCAGUUCUGGGCAGCCCC	chr16:67200014-67200361(+)$1	347	18	47	14.5694

#DB
((((..(.((((...)))).)..))))).	chr22:50699955-50700208(-)$1	1	94	123	11.1441
.((((..((((......))))...)))).	chr14:21490509-21490790(-)$1	1	113	142	11.3994
(((.(((.((((......)))).))).))	chr16:2569099-2569350(+)$1	1	217	246	12.4841
...((((...((((...)))).))))...	chr17:76119959-76120170(-)$1	1	89	118	10.8775
(((((...((((.....).)))....)))	chr19:12662023-12662245(-)$1	1	41	70	12.7362
(..(((((((((.....))))..))))).	chr17:73843445-73843669(-)$1	1	5	34	15.7818
((.(....((((.....)))).....).)	chr15:41043471-41043724(-)$1	1	208	237	12.7813
.((.....((((.....))))..))))))	chr16:89806262-89806500(-)$1	1	48	77	14.5718
(((.(((.((((.....)))).).)).))	chr19:51305381-51305650(-)$1	1	59	88	15.5474
(((((((.((((.....)))))))....)	chr17:79639083-79639329(+)$1	1	171	200	15.4153
((((((((((((......)))).))).))	chr3:184070364-184070628(-)$1	1	106	135	12.0049
(((((...((((.....)))).)))))..	chr17:27240747-27240998(-)$1	1	219	248	14.1893
.((((.((((((.....)))..)))))))	chr3:12632178-12632399(-)$1	1	72	101	12.1245
...(((.(((((.....))))).))))))	chr2:26467253-26467499(-)$1	1	128	157	13.2740
((.((((.((((......)))))))))))	chr9:116137716-116137982(-)$1	1	165	194	11.3370
(.((.(.(((((.....))))).)))..)	chr1:65886322-65886535(+)$1	1	126	155	11.7753
(((.(((.((((.....))))..)))...	chr15:64404782-64404996(+)$1	1	77	106	16.9136
(((((...((((.....))))...)))))	chr1:6692316-6692592(+)$1	1	44	73	15.2598
(((.((..((((....))))...)).)))	chr12:122613672-122613880(+)$1	1	175	204	10.8692
(((.((((((((.....))).))))).))	chr17:61919649-61919919(-)$1	1	231	260	12.0264
.((((.(..(((.....)))..).)))).	chr6:7895176-7895443(-)$1	1	222	251	12.9574
((..(((.((((.....))))........	chr14:100827884-100828146(-)$1	1	61	90	14.4603
(((((.((((((.....))))).).))))	chr16:21636351-21636618(+)$1	1	85	114	12.5686
(..((((.((((.....))))))))..))	chr15:43348356-43348642(-)$1	1	186	215	15.1828
(.(((((.((((.....))))))))).))	chr17:25633854-25634088(+)$1	1	23	52	14.7084
(..(((((((((.....))))...)))))	chr11:122929630-122929859(-)$1	1	182	211	16.1923
(((.((..(((......)))...)).)))	chr6:30296713-30296986(+)$1	1	194	223	10.5504
.((((.(.((((.....))))))))).))	chr19:1581120-1581406(-)$1	1	121	150	15.2958
...((...((((.....)))).))...))	chr19:48830636-48830904(+)$1	1	151	180	15.6584
(((((((.((((.....)))).))).)))	chr6:136590426-136590682(-)$1	1	201	230	15.4530
((((((..((((.....)))).)))))).	chr17:34136479-34136709(+)$1	1	177	206	15.2252
(.((((.(((((.....))))).)))).)	chr1:46656006-46656255(-)$1	1	110	139	12.6455
((.(((..((((......)))).))))))	chr10:30723206-30723413(+)$1	1	2	31	13.2614
((((((((.(((.....)))...))))))	chr17:26521632-26521879(+)$1	1	119	148	11.6414
...((((.((((.....))))))))..))	chr22:41979958-41980215(-)$1	1	97	126	15.0844
(.((((((((((.....)))).)))))))	chrX:153647811-153648121(+)$1	1	81	110	14.5741
(.((((.((((......))))..)))).)	chr2:130918549-130918859(-)$1	1	193	222	12.6860
(....((((.((((...)))).))))...	chr16:72144872-72145117(+)$1	1	75	104	10.4632
.(((((..((((.....))))...)))))	chr2:216177246-216177490(+)$1	1	81	110	15.8806
..(((..(((((.....)))))...))).	chr19:18643967-18644180(-)$1	1	81	110	13.6852
((((((..((((.....)))).)))))))	chr1:154245149-154245394(+)$1	1	29	58	16.0294
(((.((((((((.....))).))))).))	chr5:137515206-137515477(+)$1	1	227	256	11.6818
((((((...((((...))))...))))))	chr5:137878470-137878772(-)$1	1	9	38	10.8842
..(((...((((.....))))...)))..	chr6:36937496-36937751(-)$1	1	127	156	17.4759
(((((((.((((.....)))).)))))).	chr13:25881985-25882196(+)$1	1	36	65	14.9253
((.(((.((((......))))..))))).	chr2:174828777-174829016(-)$1	1	170	199	12.2255
..(((.(.((((.....)))).).)))..	chr16:67200014-67200361(+)$1	1	18	47	14.5694

#PSSM
c : 0.23	e : 0.14	" : 0.10	b : 0.08	f : 0.08	a : 0.06	: : 0.04	d : 0.04	[ : 0.04	! : 0.04	g : 0.04	# : 0.02	h : 0.02	' : 0.02	
e : 0.17	d : 0.12	c : 0.12	[ : 0.10	! : 0.08	b : 0.08	" : 0.08	f : 0.08	# : 0.04	g : 0.04	h : 0.02	' : 0.02	
e : 0.19	d : 0.14	c : 0.14	f : 0.12	! : 0.08	[ : 0.08	" : 0.06	# : 0.04	b : 0.04	g : 0.04	h : 0.02	
d : 0.21	e : 0.19	[ : 0.14	c : 0.12	f : 0.12	b : 0.04	g : 0.04	a : 0.02	$ : 0.02	h : 0.02	! : 0.02	# : 0.02	
c : 0.23	d : 0.21	e : 0.19	f : 0.10	b : 0.08	# : 0.04	g : 0.04	! : 0.02	$ : 0.02	[ : 0.02	h : 0.02	
c : 0.19	d : 0.14	e : 0.12	" : 0.10	[ : 0.10	f : 0.10	! : 0.06	b : 0.06	# : 0.02	$ : 0.02	a : 0.02	g : 0.02	
! : 0.17	c : 0.14	a : 0.12	" : 0.12	d : 0.10	e : 0.10	[ : 0.10	f : 0.06	# : 0.02	$ : 0.02	
[ : 0.29	e : 0.19	" : 0.14	! : 0.14	d : 0.08	c : 0.04	f : 0.04	# : 0.02	$ : 0.02	
d : 0.70	e : 0.14	c : 0.06	" : 0.04	! : 0.02	[ : 0.02	
d : 0.70	c : 0.14	e : 0.10	" : 0.02	[ : 0.02	
d : 0.74	c : 0.14	e : 0.10	
d : 0.68	c : 0.10	e : 0.10	o : 0.08	a : 0.02	
n : 0.72	o : 0.17	d : 0.06	l : 0.02	m : 0.02	
n : 0.72	o : 0.17	l : 0.04	d : 0.04	m : 0.02	
n : 0.72	o : 0.17	l : 0.08	m : 0.02	
n : 0.72	o : 0.17	l : 0.06	d : 0.02	m : 0.02	
n : 0.72	o : 0.17	d : 0.06	l : 0.04	
d : 0.65	c : 0.12	e : 0.10	o : 0.08	a : 0.02	
d : 0.74	c : 0.12	e : 0.10	] : 0.02	
d : 0.72	c : 0.14	e : 0.10	] : 0.02	
d : 0.68	e : 0.10	3 : 0.08	2 : 0.04	] : 0.04	a : 0.02	c : 0.02	
] : 0.23	3 : 0.19	2 : 0.17	e : 0.17	d : 0.12	c : 0.04	5 : 0.02	> : 0.02	a : 0.02	
3 : 0.21	] : 0.14	2 : 0.12	d : 0.12	e : 0.08	a : 0.06	c : 0.06	f : 0.06	4 : 0.02	5 : 0.02	> : 0.02	b : 0.02	g : 0.02	
c : 0.19	d : 0.17	e : 0.12	3 : 0.12	f : 0.10	b : 0.08	] : 0.06	a : 0.04	4 : 0.02	5 : 0.02	> : 0.02	g : 0.02	
d : 0.21	c : 0.21	e : 0.17	b : 0.10	f : 0.10	4 : 0.04	3 : 0.04	5 : 0.02	h : 0.02	> : 0.02	] : 0.02	g : 0.02	
d : 0.19	c : 0.19	e : 0.17	f : 0.10	g : 0.06	] : 0.06	4 : 0.04	b : 0.04	2 : 0.04	5 : 0.02	h : 0.02	> : 0.02	3 : 0.02	
] : 0.14	e : 0.12	d : 0.12	c : 0.12	f : 0.12	g : 0.08	3 : 0.06	2 : 0.06	4 : 0.04	a : 0.02	h : 0.02	> : 0.02	b : 0.02	
e : 0.14	c : 0.14	d : 0.12	f : 0.12	g : 0.08	] : 0.06	3 : 0.04	4 : 0.04	2 : 0.04	h : 0.04	b : 0.04	: : 0.02	> : 0.02	i : 0.02	6 : 0.02	
c : 0.19	e : 0.12	d : 0.08	2 : 0.08	g : 0.08	] : 0.06	3 : 0.06	f : 0.06	: : 0.04	a : 0.04	h : 0.04	> : 0.02	b : 0.02	i : 0.02	4 : 0.02	6 : 0.02	

#score	638.4809964495147
#seq	47
#width	29
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF207UUG_ZC3H8_CDS_m1_run1.txt

#BEAR
ffffbbeeeee"""ddddnnnnndddd]eeeee]bb]ff	chr11:5269441-5269693(-)$1	252	71	110	17.6202
ffff$$$$$dddd!!ddddmmmmddddddddffffffee	chr2:62096528-62096788(-)$1	260	112	151	20.1917
ffff:ccc[dddd!!ddddmmmmdddd22dddd333ccc	chr2:27884874-27885155(-)$1	281	85	124	20.8190
ddd####eeeeedddd[ddddllldddd]dddd333eee	chr22:39714973-39715181(-)$1	208	74	113	19.5959
ee[a"""dddd"""bbddddmmmmdddd]bb333dddd]	chr2:27884128-27884388(-)$1	260	129	168	19.7815

#otherMatches

#Seq PSSM
AGUGGCCAGUGCCCUGUCCUCCAGAUACCACUGAGCUCA	chr11:5269441-5269693(-)$1	252	71	110	17.6202
AACAUUUUGGAGGAACUGGUUGUCCAGCCUCUGUUGGUA	chr2:62096528-62096788(-)$1	260	112	151	20.1917
ACAUAUGGACAAUGAAUCUGCAAAGGUGAGUUGAAACCA	chr2:27884874-27885155(-)$1	281	85	124	20.8190
AACUUAUUGACGGGCGGACAGAAACUGUGUGCUGAUUGU	chr22:39714973-39715181(-)$1	208	74	113	19.5959
UGAGAUACUGGGGAGAGAUACCAAUAUCAUCAAGCCAGA	chr2:27884128-27884388(-)$1	260	129	168	19.7815

#DB
(((((((((((...((((.....)))).))))).)).))	chr11:5269441-5269693(-)$1	1	71	110	17.6202
((((.....((((..((((....))))))))))))))))	chr2:62096528-62096788(-)$1	1	112	151	20.1917
)))).(((.((((..((((....))))..))))...)))	chr2:27884874-27885155(-)$1	1	85	124	20.8190
(((....(((((((((.((((...)))).))))...)))	chr22:39714973-39715181(-)$1	1	74	113	19.5959
((.(...((((...((((((....)))).))...)))).	chr2:27884128-27884388(-)$1	1	129	168	19.7815

#PSSM
f : 0.60	d : 0.20	e : 0.20	
f : 0.60	d : 0.20	e : 0.20	
f : 0.60	d : 0.20	[ : 0.20	
f : 0.60	# : 0.20	a : 0.20	
b : 0.20	$ : 0.20	: : 0.20	# : 0.20	" : 0.20	
b : 0.20	$ : 0.20	c : 0.20	# : 0.20	" : 0.20	
e : 0.20	$ : 0.20	c : 0.20	# : 0.20	" : 0.20	
e : 0.40	$ : 0.20	c : 0.20	d : 0.20	
e : 0.40	$ : 0.20	[ : 0.20	d : 0.20	
d : 0.60	e : 0.40	
d : 0.60	e : 0.40	
" : 0.40	d : 0.40	e : 0.20	
d : 0.60	" : 0.40	
" : 0.40	! : 0.40	d : 0.20	
d : 0.40	! : 0.40	b : 0.20	
d : 0.80	b : 0.20	
d : 0.80	[ : 0.20	
d : 1.00	
d : 0.80	n : 0.20	
m : 0.40	d : 0.40	n : 0.20	
m : 0.60	n : 0.20	d : 0.20	
m : 0.60	n : 0.20	l : 0.20	
m : 0.60	n : 0.20	l : 0.20	
d : 0.60	l : 0.20	m : 0.20	
d : 1.00	
d : 1.00	
d : 1.00	
d : 0.60	] : 0.20	2 : 0.20	
] : 0.40	e : 0.20	d : 0.20	2 : 0.20	
d : 0.60	e : 0.20	b : 0.20	
d : 0.60	e : 0.20	b : 0.20	
d : 0.40	e : 0.20	f : 0.20	3 : 0.20	
d : 0.40	e : 0.20	f : 0.20	3 : 0.20	
3 : 0.60	] : 0.20	f : 0.20	
3 : 0.40	b : 0.20	f : 0.20	d : 0.20	
3 : 0.40	b : 0.20	f : 0.20	d : 0.20	
] : 0.20	f : 0.20	c : 0.20	e : 0.20	d : 0.20	
e : 0.40	f : 0.20	c : 0.20	d : 0.20	
e : 0.40	f : 0.20	c : 0.20	] : 0.20	

#score	98.00860247209995
#seq	5
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF298YFY_MATR3_CDS_m1_run2.txt

#BEAR
b[eeeee^^^^^^^^^^^^^^^^^^^^^^^^	chr17:26937537-26937901(-)$1	364	98	129	35.3736
c!!dddd^^^^^^^^^^^^^^^^^^dddd]c	chr2:242688146-242688438(+)$1	292	104	135	32.2886
!!bb^^^^^^^^^^^^^^^^^^^^^^^^^bb	chr2:186659248-186659494(-)$1	246	205	236	35.0278
h!!dddd^^^^^^^^^^^^^^^^^^^^^ddd	chr2:186657735-186657997(-)$1	262	56	87	35.0368
f[cccbbyyyyyyyyyyyyyyyybb]ccc]f	chr2:186659140-186659385(-)$1	245	203	234	24.1854
gggggg^^^^^^^^^^^^^^^^^^^^^^^gg	chr7:141464396-141464686(+)$1	290	154	185	35.3533
EEEEccc^^^^^^^^^^^^^^^^^^^^ccc:	chr3:99569369-99569631(+)$1	262	47	78	30.4812
$$eeeee^^^^^^^^^^^^^^^^^^^^^eee	chr7:141464139-141464378(+)$1	239	150	181	34.5567
ggggggg^^^^^^^^^^^^^^^^^^^^gggg	chr3:99568176-99568417(+)$1	241	62	93	33.9384

#otherMatches

#Seq PSSM
CAUGAACUUCUUUCUUCUUUUCCAUCCUUUC	chr17:26937537-26937901(-)$1	364	98	129	35.3736
GUUCUGCUCUGAUCCCACUCCAACUGCAGUC	chr2:242688146-242688438(+)$1	292	104	135	32.2886
UUGAUUCUCCAUUUCUCAUAAAUAUUUCUUC	chr2:186659248-186659494(-)$1	246	205	236	35.0278
AAAAGGAUUUUCCCUUUCUUUAUCUAAUUCC	chr2:186657735-186657997(-)$1	262	56	87	35.0368
UUGGUACUUCUUUCCUUCUCUUUGUGACCCA	chr2:186659140-186659385(-)$1	245	203	234	24.1854
CCUCCUACUCUUUGCUCAUCUUCUCCCUGGG	chr7:141464396-141464686(+)$1	290	154	185	35.3533
AUACCAGCGUUUCCAUAUUCUCCCUUACUGA	chr3:99569369-99569631(+)$1	262	47	78	30.4812
UCGCCAGUUUCUCUCACCCCACAUUCCUCUG	chr7:141464139-141464378(+)$1	239	150	181	34.5567
CUAAAUCUCUGUUCCUGUUUUCUUGUUGAUU	chr3:99568176-99568417(+)$1	241	62	93	33.9384

#DB
(.(((((........................	chr17:26937537-26937901(-)$1	1	98	129	35.3736
(..((((..................)))).)	chr2:242688146-242688438(+)$1	1	104	135	32.2886
..((.........................))	chr2:186659248-186659494(-)$1	1	205	236	35.0278
(..((((.....................)))	chr2:186657735-186657997(-)$1	1	56	87	35.0368
(.(((((................)).))).)	chr2:186659140-186659385(-)$1	1	203	234	24.1854
((((((.......................))	chr7:141464396-141464686(+)$1	1	154	185	35.3533
(((((((....................))).	chr3:99569369-99569631(+)$1	1	47	78	30.4812
..(((((.....................)))	chr7:141464139-141464378(+)$1	1	150	181	34.5567
(((((((....................))))	chr3:99568176-99568417(+)$1	1	62	93	33.9384

#PSSM
g : 0.22	b : 0.11	c : 0.11	! : 0.11	h : 0.11	f : 0.11	E : 0.11	$ : 0.11	
! : 0.33	[ : 0.22	g : 0.22	E : 0.11	$ : 0.11	
e : 0.22	! : 0.22	g : 0.22	b : 0.11	c : 0.11	E : 0.11	
e : 0.22	d : 0.22	g : 0.22	b : 0.11	c : 0.11	E : 0.11	
e : 0.22	d : 0.22	c : 0.22	g : 0.22	^ : 0.11	
e : 0.22	d : 0.22	g : 0.22	^ : 0.11	b : 0.11	c : 0.11	
e : 0.22	d : 0.22	^ : 0.22	b : 0.11	c : 0.11	g : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	y : 0.11	
^ : 0.88	b : 0.11	
^ : 0.88	b : 0.11	
^ : 0.77	d : 0.11	] : 0.11	
^ : 0.77	d : 0.11	c : 0.11	
^ : 0.55	c : 0.22	d : 0.11	g : 0.11	
^ : 0.33	d : 0.22	c : 0.22	e : 0.11	g : 0.11	
] : 0.22	g : 0.22	^ : 0.11	b : 0.11	d : 0.11	c : 0.11	e : 0.11	
g : 0.22	^ : 0.11	c : 0.11	b : 0.11	d : 0.11	f : 0.11	: : 0.11	e : 0.11	

#score	296.2422653271332
#seq	9
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151ZTH_AKAP1_transcript_m2_run1.txt

#BEAR
cccooooooccc:	chr17:76105771-76106041(-)$1	270	0	13	9.7106
[bboooooobba2	chr12:133348716-133348967(-)$1	251	103	116	9.6562
"bboooooobb33	chr12:56365856-56366179(+)$1	323	31	44	9.7186
cccooooooccc:	chr17:73842189-73842430(-)$1	241	145	158	9.7106
dddoooooodddd	chr19:4038164-4038403(+)$1	239	93	106	9.4363
fbboooooobb]f	chr12:113826936-113827200(+)$1	264	111	124	9.5575
cccooooooccc:	chr16:81063264-81063537(+)$1	273	246	259	9.7106
eeeooooooeeee	chr10:102122311-102122565(+)$1	254	128	141	9.3713
[bboooooobb]a	chr19:18977931-18978280(+)$1	349	283	296	9.8623
cccoooooocccc	chr9:136209277-136209580(-)$1	303	272	285	10.4008
bbaooooooa]bb	chr1:36067997-36068217(-)$1	220	47	60	8.8990
cccooooooccc:	chr1:15756124-15756391(+)$1	267	114	127	9.7106
cccooooooccc]	chr17:40466021-40466298(-)$1	277	185	198	10.4782
dddoooooodddd	chr20:55983852-55984088(+)$1	236	166	179	9.4363
dddoooooodddd	chr8:11700386-11700654(-)$1	268	214	227	9.4363
cccoooooocccD	chr19:1038209-1038463(+)$1	254	203	216	9.5936
fffooooooffff	chr1:201104158-201104452(-)$1	294	175	188	9.2363
===oooooo====	chr10:75009834-75010083(-)$1	249	222	235	9.8203
cccooooooccc]	chr11:66392950-66393214(+)$1	264	168	181	10.4782
cccooooooccc]	chr16:29679094-29679321(+)$1	227	160	173	10.4782
cccooooooccc:	chr17:71280246-71280533(-)$1	287	242	255	9.7106
d[aooooooa]dd	chr19:18978813-18979046(+)$1	233	125	138	9.4335
dddoooooodddd	chr1:36067930-36068173(-)$1	243	185	198	9.4363
[bboooooobb]a	chr17:80201118-80201415(-)$1	297	262	275	9.8623
[bboooooobbcc	chr15:74319613-74319995(+)$1	382	242	255	9.9547
eeeooooooeeee	chr1:230416329-230416583(+)$1	254	102	115	9.3713
dddoooooodddd	chr11:203990-204228(-)$1	238	181	194	9.4363
===oooooo====	chr10:103867451-103867723(-)$1	272	23	36	9.8203
cccooooooccc:	chr19:6414035-6414307(-)$1	272	165	178	9.7106
cccoooooocccf	chr9:134453800-134454055(-)$1	255	167	180	10.2758
fffooooooffff	chr7:44252203-44252527(+)$1	324	164	177	9.2363
eeeooooooeeee	chr7:44872212-44872491(-)$1	279	184	197	9.3713
dddoooooodddd	chr16:89711092-89711345(-)$1	253	187	200	9.4363
cccooooooccc]	chr20:61919625-61919947(+)$1	322	152	165	10.4782
cccooooooccc3	chr20:39803904-39804222(+)$1	318	69	82	10.4465
cccooooooccc:	chr17:47126770-47127047(+)$1	277	220	233	9.7106
eeeooooooeeee	chr16:74656131-74656460(-)$1	329	111	124	9.3713
[bboooooobb22	chr20:3089213-3089522(-)$1	309	122	135	9.4475
hhhoooooohhhh	chr17:47126918-47127209(+)$1	291	8	21	8.7818
fffooooooffff	chr19:1582518-1582758(-)$1	240	138	151	9.2363
cccooooooccc:	chr9:130697386-130697701(-)$1	315	97	110	9.7106
cbboooooobb]c	chr19:49871053-49871320(+)$1	267	148	161	9.8438
cccooooooccc4	chr1:31342491-31342746(-)$1	255	92	105	10.3987
eeeooooooeeee	chr12:133298280-133298526(+)$1	246	166	179	9.3713
eeeooooooeeee	chr17:35837658-35837968(+)$1	310	34	47	9.3713
eeeooooooeeee	chr12:133298404-133298656(+)$1	252	42	55	9.3713
eeeooooooeeee	chrX:109418942-109419212(+)$1	270	246	259	9.3713
gggoooooogggg	chr11:770390-770658(-)$1	268	191	204	9.6481
cccooooooccc]	chr19:3535969-3536227(+)$1	258	150	163	10.4782
[bboooooobb]c	chr7:23454462-23454805(-)$1	343	131	144	9.8471
[bboooooobb]h	chr14:23441271-23441659(-)$1	388	29	42	9.5818
dddoooooodddd	chr19:24187166-24187406(-)$1	240	223	236	9.4363
cccooooooccc8	chr1:17733702-17733944(-)$1	242	156	169	10.0344
cccooooooccc]	chr15:58246093-58246380(-)$1	287	93	106	10.4782
[bboooooobbcc	chr2:131131424-131131669(+)$1	245	53	66	9.9547
cbboooooobb]c	chr17:46698790-46699034(-)$1	244	167	180	9.8438
eeeooooooeeee	chrM:12054-12292(+)$1	238	189	202	9.3713
fffooooooffff	chr1:19585684-19585995(+)$1	311	149	162	9.2363
dddoooooodddd	chr8:11700053-11700298(-)$1	245	174	187	9.4363
[bboooooobbbb	chr1:160967738-160968011(-)$1	273	190	203	9.3913
fffooooooffff	chr1:10519765-10520085(-)$1	320	216	229	9.2363
cccoooooocccd	chr17:79524499-79524761(-)$1	262	24	37	10.3553
eeeooooooeeee	chr1:46163224-46163497(-)$1	273	129	142	9.3713
cccooooooccc:	chr22:24969106-24969355(+)$1	249	135	148	9.7106
[bboooooobbff	chr1:183521880-183522158(+)$1	278	42	55	9.6642
!bboooooobb22	chr21:47609940-47610211(-)$1	271	14	27	9.3974
cccooooooccc:	chr1:160966155-160966397(-)$1	242	65	78	9.7106
dddoooooodddd	chr16:85684385-85684644(+)$1	259	48	61	9.4363
gggoooooogggg	chr7:44872119-44872378(-)$1	259	135	148	9.6481
b[aooooooa]bb	chr19:4035678-4035967(+)$1	289	178	191	8.8050
hhhoooooohhhh	chr17:40556402-40556659(-)$1	257	22	35	8.7818
dddoooooodddd	chr1:156219717-156220006(-)$1	289	155	168	9.4363
[bboooooobbdd	chr11:1774232-1774531(-)$1	299	47	60	9.7781
eeeooooooeeee	chr19:1592526-1592792(-)$1	266	7	20	9.3713
fffooooooffff	chr8:9629594-9629830(+)$1	236	47	60	9.2363

#otherMatches

#Seq PSSM
ccaaguagcuggg	chr17:76105771-76106041(-)$1	270	0	13	9.7106
agccccugcgccc	chr12:133348716-133348967(-)$1	251	103	116	9.6562
AGAAUUCGGUUGA	chr12:56365856-56366179(+)$1	323	31	44	9.7186
CCCUGUCCUGGGU	chr17:73842189-73842430(-)$1	241	145	158	9.7106
AUUCCAGCCAGUG	chr19:4038164-4038403(+)$1	239	93	106	9.4363
UCCAUGUCAGGCA	chr12:113826936-113827200(+)$1	264	111	124	9.5575
uucacaaaggaaa	chr16:81063264-81063537(+)$1	273	246	259	9.7106
CACUUUCACGUGG	chr10:102122311-102122565(+)$1	254	128	141	9.3713
GGCCCCAUUGCGA	chr19:18977931-18978280(+)$1	349	283	296	9.8623
UGCCACUCUGUGC	chr9:136209277-136209580(-)$1	303	272	285	10.4008
gccuagaucgcgc	chr1:36067997-36068217(-)$1	220	47	60	8.8990
GACCUGCCUGUCA	chr1:15756124-15756391(+)$1	267	114	127	9.7106
GCCCGCCUUGGCU	chr17:40466021-40466298(-)$1	277	185	198	10.4782
GCAGAAGGGUGCG	chr20:55983852-55984088(+)$1	236	166	179	9.4363
ggcgcaguggcuc	chr8:11700386-11700654(-)$1	268	214	227	9.4363
CCAAGUGACUGGA	chr19:1038209-1038463(+)$1	254	203	216	9.5936
UCUGAUGGGAGAG	chr1:201104158-201104452(-)$1	294	175	188	9.2363
caggaguagcugg	chr10:75009834-75010083(-)$1	249	222	235	9.8203
CCUACAAAAAGGC	chr11:66392950-66393214(+)$1	264	168	181	10.4782
gcgugcaugugcc	chr16:29679094-29679321(+)$1	227	160	173	10.4782
agauaauuuucua	chr17:71280246-71280533(-)$1	287	242	255	9.7106
UUGACAAACCCAG	chr19:18978813-18979046(+)$1	233	125	138	9.4335
UAUACAUACAUAC	chr1:36067930-36068173(-)$1	243	185	198	9.4363
UGCACCUUGGUUC	chr17:80201118-80201415(-)$1	297	262	275	9.8623
ugcauuguagcgu	chr15:74319613-74319995(+)$1	382	242	255	9.9547
CAGCGAGUCCUGC	chr1:230416329-230416583(+)$1	254	102	115	9.3713
AGAACUGCCUCUG	chr11:203990-204228(-)$1	238	181	194	9.4363
GGUGCCAAGAUUU	chr10:103867451-103867723(-)$1	272	23	36	9.8203
CCUCUCCGCAGGC	chr19:6414035-6414307(-)$1	272	165	178	9.7106
AGGGCUCCUCCUC	chr9:134453800-134454055(-)$1	255	167	180	10.2758
GGGAGUGAGCCCA	chr7:44252203-44252527(+)$1	324	164	177	9.2363
ccaaaguacuggg	chr7:44872212-44872491(-)$1	279	184	197	9.3713
CGUGCAGGAACGU	chr16:89711092-89711345(-)$1	253	187	200	9.4363
CUGUGCUGUCAGA	chr20:61919625-61919947(+)$1	322	152	165	10.4782
GCCUAUUUUGGUG	chr20:39803904-39804222(+)$1	318	69	82	10.4465
CCACCCAAUUGGC	chr17:47126770-47127047(+)$1	277	220	233	9.7106
uguuucacuacgu	chr16:74656131-74656460(-)$1	329	111	124	9.3713
ugcuauguugucc	chr20:3089213-3089522(-)$1	309	122	135	9.4475
GGUUUGCCCACUU	chr17:47126918-47127209(+)$1	291	8	21	8.7818
GUGAGCGGGCACC	chr19:1582518-1582758(-)$1	240	138	151	9.2363
CCUCCACCAAGGC	chr9:130697386-130697701(-)$1	315	97	110	9.7106
gcaggaggaugac	chr19:49871053-49871320(+)$1	267	148	161	9.8438
GAGUCCUUUCUCC	chr1:31342491-31342746(-)$1	255	92	105	10.3987
ccaaagugcuggg	chr12:133298280-133298526(+)$1	246	166	179	9.3713
ccgaauagcuggg	chr17:35837658-35837968(+)$1	310	34	47	9.3713
ccaaagugcuggg	chr12:133298404-133298656(+)$1	252	42	55	9.3713
UUUGGUACAGGAG	chrX:109418942-109419212(+)$1	270	246	259	9.3713
CUUGAGGGGAGGG	chr11:770390-770658(-)$1	268	191	204	9.6481
CCAACAUCCUGGU	chr19:3535969-3536227(+)$1	258	150	163	10.4782
GGGGUGAUGCUGA	chr7:23454462-23454805(-)$1	343	131	144	9.8471
AGCCAUAUAGCCC	chr14:23441271-23441659(-)$1	388	29	42	9.5818
AGGGCUACACCUG	chr19:24187166-24187406(-)$1	240	223	236	9.4363
CUCUCCUUUGAGC	chr1:17733702-17733944(-)$1	242	156	169	10.0344
CAAGUUCCAUUGU	chr15:58246093-58246380(-)$1	287	93	106	10.4782
AGUUAGAUUACUA	chr2:131131424-131131669(+)$1	245	53	66	9.9547
GGCAAAAUGGCAC	chr17:46698790-46699034(-)$1	244	167	180	9.8438
UGUCUAACAACAU	chrM:12054-12292(+)$1	238	189	202	9.3713
UUUCUUAGAAAAG	chr1:19585684-19585995(+)$1	311	149	162	9.2363
GUUACCAUAAGCC	chr8:11700053-11700298(-)$1	245	174	187	9.4363
cuguaaucccagc	chr1:160967738-160968011(-)$1	273	190	203	9.3913
agcccaggagcuc	chr1:10519765-10520085(-)$1	320	216	229	9.2363
GGAUGCAACUCCC	chr17:79524499-79524761(-)$1	262	24	37	10.3553
gugagccaccgca	chr1:46163224-46163497(-)$1	273	129	142	9.3713
CUGGAAAAGCAGC	chr22:24969106-24969355(+)$1	249	135	148	9.7106
AGUCCAUUCACAG	chr1:183521880-183522158(+)$1	278	42	55	9.6642
ACACAGAAAUGCA	chr21:47609940-47610211(-)$1	271	14	27	9.3974
gccugccuuggcc	chr1:160966155-160966397(-)$1	242	65	78	9.7106
CCGAGGCUGCGGA	chr16:85684385-85684644(+)$1	259	48	61	9.4363
AAUGUACUAGUUA	chr7:44872119-44872378(-)$1	259	135	148	9.6481
guccacaccgucu	chr19:4035678-4035967(+)$1	289	178	191	8.8050
GCUCGAGCUGGCU	chr17:40556402-40556659(-)$1	257	22	35	8.7818
CAGGCAGCUCUGG	chr1:156219717-156220006(-)$1	289	155	168	9.4363
AGAUCUGUUUCGU	chr11:1774232-1774531(-)$1	299	47	60	9.7781
cccggcugggggc	chr19:1592526-1592792(-)$1	266	7	20	9.3713
ugggacucaucau	chr8:9629594-9629830(+)$1	236	47	60	9.2363

#DB
(((......))).	chr17:76105771-76106041(-)$1	1	0	13	9.7106
.((......))).	chr12:133348716-133348967(-)$1	1	103	116	9.6562
.((......))..	chr12:56365856-56366179(+)$1	1	31	44	9.7186
(((......))).	chr17:73842189-73842430(-)$1	1	145	158	9.7106
(((......))))	chr19:4038164-4038403(+)$1	1	93	106	9.4363
(((......)).)	chr12:113826936-113827200(+)$1	1	111	124	9.5575
(((......))).	chr16:81063264-81063537(+)$1	1	246	259	9.7106
(((......))))	chr10:102122311-102122565(+)$1	1	128	141	9.3713
.((......)).)	chr19:18977931-18978280(+)$1	1	283	296	9.8623
(((......))))	chr9:136209277-136209580(-)$1	1	272	285	10.4008
(((......).))	chr1:36067997-36068217(-)$1	1	47	60	8.8990
(((......))).	chr1:15756124-15756391(+)$1	1	114	127	9.7106
(((......))).	chr17:40466021-40466298(-)$1	1	185	198	10.4782
(((......))))	chr20:55983852-55984088(+)$1	1	166	179	9.4363
(((......))))	chr8:11700386-11700654(-)$1	1	214	227	9.4363
(((......))))	chr19:1038209-1038463(+)$1	1	203	216	9.5936
(((......))))	chr1:201104158-201104452(-)$1	1	175	188	9.2363
(((......))))	chr10:75009834-75010083(-)$1	1	222	235	9.8203
(((......))).	chr11:66392950-66393214(+)$1	1	168	181	10.4782
(((......))).	chr16:29679094-29679321(+)$1	1	160	173	10.4782
(((......))).	chr17:71280246-71280533(-)$1	1	242	255	9.7106
(.(......).))	chr19:18978813-18979046(+)$1	1	125	138	9.4335
(((......))))	chr1:36067930-36068173(-)$1	1	185	198	9.4363
.((......)).)	chr17:80201118-80201415(-)$1	1	262	275	9.8623
.((......))))	chr15:74319613-74319995(+)$1	1	242	255	9.9547
(((......))))	chr1:230416329-230416583(+)$1	1	102	115	9.3713
(((......))))	chr11:203990-204228(-)$1	1	181	194	9.4363
(((......))))	chr10:103867451-103867723(-)$1	1	23	36	9.8203
(((......))).	chr19:6414035-6414307(-)$1	1	165	178	9.7106
(((......))))	chr9:134453800-134454055(-)$1	1	167	180	10.2758
(((......))))	chr7:44252203-44252527(+)$1	1	164	177	9.2363
(((......))))	chr7:44872212-44872491(-)$1	1	184	197	9.3713
(((......))))	chr16:89711092-89711345(-)$1	1	187	200	9.4363
(((......))).	chr20:61919625-61919947(+)$1	1	152	165	10.4782
(((......))).	chr20:39803904-39804222(+)$1	1	69	82	10.4465
(((......))).	chr17:47126770-47127047(+)$1	1	220	233	9.7106
(((......))))	chr16:74656131-74656460(-)$1	1	111	124	9.3713
.((......))..	chr20:3089213-3089522(-)$1	1	122	135	9.4475
(((......))))	chr17:47126918-47127209(+)$1	1	8	21	8.7818
(((......))))	chr19:1582518-1582758(-)$1	1	138	151	9.2363
(((......))).	chr9:130697386-130697701(-)$1	1	97	110	9.7106
(((......)).)	chr19:49871053-49871320(+)$1	1	148	161	9.8438
(((......))).	chr1:31342491-31342746(-)$1	1	92	105	10.3987
(((......))))	chr12:133298280-133298526(+)$1	1	166	179	9.3713
(((......))))	chr17:35837658-35837968(+)$1	1	34	47	9.3713
(((......))))	chr12:133298404-133298656(+)$1	1	42	55	9.3713
(((......))))	chrX:109418942-109419212(+)$1	1	246	259	9.3713
(((......))))	chr11:770390-770658(-)$1	1	191	204	9.6481
(((......))).	chr19:3535969-3536227(+)$1	1	150	163	10.4782
.((......)).)	chr7:23454462-23454805(-)$1	1	131	144	9.8471
.((......)).)	chr14:23441271-23441659(-)$1	1	29	42	9.5818
(((......))))	chr19:24187166-24187406(-)$1	1	223	236	9.4363
(((......))).	chr1:17733702-17733944(-)$1	1	156	169	10.0344
(((......))).	chr15:58246093-58246380(-)$1	1	93	106	10.4782
.((......))))	chr2:131131424-131131669(+)$1	1	53	66	9.9547
(((......)).)	chr17:46698790-46699034(-)$1	1	167	180	9.8438
(((......))))	chrM:12054-12292(+)$1	1	189	202	9.3713
(((......))))	chr1:19585684-19585995(+)$1	1	149	162	9.2363
(((......))))	chr8:11700053-11700298(-)$1	1	174	187	9.4363
.((......))))	chr1:160967738-160968011(-)$1	1	190	203	9.3913
(((......))))	chr1:10519765-10520085(-)$1	1	216	229	9.2363
(((......))))	chr17:79524499-79524761(-)$1	1	24	37	10.3553
(((......))))	chr1:46163224-46163497(-)$1	1	129	142	9.3713
(((......))).	chr22:24969106-24969355(+)$1	1	135	148	9.7106
.((......))))	chr1:183521880-183522158(+)$1	1	42	55	9.6642
.((......))..	chr21:47609940-47610211(-)$1	1	14	27	9.3974
(((......))).	chr1:160966155-160966397(-)$1	1	65	78	9.7106
(((......))))	chr16:85684385-85684644(+)$1	1	48	61	9.4363
(((......))))	chr7:44872119-44872378(-)$1	1	135	148	9.6481
(.(......).))	chr19:4035678-4035967(+)$1	1	178	191	8.8050
(((......))))	chr17:40556402-40556659(-)$1	1	22	35	8.7818
(((......))))	chr1:156219717-156220006(-)$1	1	155	168	9.4363
.((......))))	chr11:1774232-1774531(-)$1	1	47	60	9.7781
(((......))))	chr19:1592526-1592792(-)$1	1	7	20	9.3713
(((......))))	chr8:9629594-9629830(+)$1	1	47	60	9.2363

#PSSM
c : 0.33	[ : 0.14	d : 0.14	e : 0.14	f : 0.09	b : 0.02	= : 0.02	h : 0.02	g : 0.02	" : 0.01	! : 0.01	
c : 0.30	b : 0.22	e : 0.14	d : 0.13	f : 0.08	= : 0.02	[ : 0.02	h : 0.02	g : 0.02	
c : 0.30	b : 0.21	e : 0.14	d : 0.13	f : 0.08	a : 0.04	= : 0.02	h : 0.02	g : 0.02	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
c : 0.30	b : 0.21	e : 0.14	d : 0.13	f : 0.08	a : 0.04	= : 0.02	h : 0.02	g : 0.02	
c : 0.30	b : 0.21	e : 0.14	d : 0.13	f : 0.08	] : 0.04	= : 0.02	h : 0.02	g : 0.02	
c : 0.33	d : 0.16	e : 0.14	] : 0.09	f : 0.09	b : 0.04	= : 0.02	2 : 0.02	h : 0.02	g : 0.02	a : 0.01	3 : 0.01	
d : 0.17	e : 0.14	: : 0.13	f : 0.12	c : 0.08	] : 0.08	2 : 0.04	b : 0.04	h : 0.04	3 : 0.02	a : 0.02	= : 0.02	g : 0.02	D : 0.01	4 : 0.01	8 : 0.01	

#score	723.348446887863
#seq	75
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF329VBT_XRCC6_CDS_m3_run2.txt

#BEAR
dd[abb[bbmmmmbb]bb]a]	chr1:28559358-28559606(-)$1	248	124	145	8.5237
[eeeee[bbmmmmbb]eeeee	chr15:90744740-90745005(+)$1	265	158	179	8.3309
ggggg[cccmmmmcccggggg	chr1:1560283-1560561(+)$1	278	106	127	10.3311
ddddbbcccmmmmccc]bb]d	chr11:62285221-62285458(-)$1	237	102	123	9.0252
eee!!ddddmmmmdddd22ee	chr11:62284590-62284832(-)$1	242	124	145	9.2553
####bb[bbmmmmbb]bb444	chr1:78425988-78426218(-)$1	230	97	118	8.7234
ccccc[ccclllcccccchhh	chr16:23690168-23690412(+)$1	244	112	133	6.9308
fff"""cccmmmmccc66666	chr19:1014093-1014326(-)$1	233	176	197	9.2261
iiiiiiiiillliiiiiiiii	chr19:54967043-54967274(+)$1	231	197	218	7.1059
fff"""cccmmmmcccfffff	chr11:62285992-62286249(-)$1	257	142	163	10.5893
eeeee!!bbmmmmbb333eee	chr14:75265156-75265420(+)$1	264	142	163	10.0070
ccc[eeeeemmmmeeeeeccc	chrX:47001712-47001940(-)$1	228	120	141	7.3822
dd"""ddddmmmmdddd]ddd	chr4:13603898-13604173(-)$1	275	217	238	8.8209
=========lll=========	chr17:65909148-65909390(+)$1	242	220	241	7.9415
ffff!!cccmmmmcccfffff	chr10:101379905-101380194(-)$1	289	185	206	10.0916
iii[cccbbmmmmbb]ccc]i	chr5:140698988-140699246(-)$1	258	147	168	9.4627
:dddd[cccmmmmccc22ddd	chr17:2234106-2234415(-)$1	309	110	131	8.9337
ddd[cccccclllccc22ccc	chr1:228336383-228336642(+)$1	259	2	23	8.0049
e####ddddmmmmddddeeee	chr14:20819105-20819353(+)$1	248	115	136	8.5871
iiiiiiiiimmmmiiiiiiii	chr5:143541835-143542064(-)$1	229	164	185	9.3265
ffff[ddddmmmmdddd]fff	chr12:133367757-133367979(-)$1	222	171	192	8.4935
ee[a[ddddmmmmdddd22a]	chr11:47772367-47772618(-)$1	251	38	59	9.0773
!bb!!ddddmmmmdddd22bb	chr4:151772953-151773217(-)$1	264	64	85	8.4230
eee"""cccmmmmccc]eeee	chr2:71650719-71650968(+)$1	249	73	94	10.8726
FFbb!!cccmmmmccc22bb:	chr19:19021694-19021908(-)$1	214	86	107	8.5977
ffffbbcccmmmmccc]bb]f	chr15:80215311-80215577(-)$1	266	126	147	9.2879
d[bb!!cccmmmmccc22bbd	chr16:1836671-1836932(+)$1	261	38	59	10.3060
eeee"""bbmmmmbb4444ee	chr17:8421848-8422072(-)$1	224	95	116	10.3616
fdddd!!bbmmmmbb4444dd	chr8:145620028-145620296(-)$1	268	208	229	9.5768
fffff[cccmmmmccc]ffff	chr12:6879450-6879672(+)$1	222	158	179	9.8659
fff"""cccmmmmccc333ff	chr11:62291035-62291272(-)$1	237	105	126	12.0943
!dddd[cccmmmmccc333dd	chr11:62300890-62301145(-)$1	255	115	136	10.7804
ggg!!ddddmmmmdddd333g	chr4:104081680-104081912(-)$1	232	52	73	9.9750
iiiiiiiiimmmmiiiiiiii	chr22:21174739-21174981(-)$1	242	108	129	9.3265
ddbb!!cccmmmmccc333bb	chr12:49666689-49666938(+)$1	249	186	207	10.8123
fff"""cccmmmmcccfffff	chr11:62285879-62286131(-)$1	252	24	45	10.5893
####bb[bbmmmmbb]bb444	chr1:78425973-78426188(-)$1	215	67	88	8.7234
""ccc!!ccclllccc22ccc	chr13:98671866-98672136(+)$1	270	119	140	8.2051
eeee!!cccmmmmccc22eee	chr1:214819016-214819246(+)$1	230	51	72	10.8896
gggggddddmmmmdddd333g	chr2:153520551-153520772(-)$1	221	79	100	9.3765
iiiiiiibbmmmmbb]iiiii	chr11:62400452-62400676(-)$1	224	100	121	9.5460
bba[bbcccmmmmccc]bb22	chr4:13601208-13601464(-)$1	256	29	50	8.6770
ffffff[bbmmmmbb]fffff	chr3:23959237-23959462(+)$1	225	114	135	8.3240
dd####cccmmmmccc333dd	chr11:62284828-62285098(-)$1	270	67	88	11.7690
b[gggggggmmmmggggggg]	chr16:1821053-1821341(-)$1	288	112	133	8.5272
d[ccc[cccmmmmccc22ccc	chr8:144999527-144999784(-)$1	257	76	97	10.7379
ccc####bbmmmmbb4444cc	chr1:16054066-16054315(+)$1	249	52	73	10.6526
dddd!!cccmmmmccc22ddd	chr19:39926240-39926448(-)$1	208	48	69	10.4809
ggg[bb[bbmmmmbb]bbggg	chr1:39896276-39896531(+)$1	255	164	185	8.8098
eee"""cccmmmmccc333ee	chr8:48872501-48872753(-)$1	252	155	176	12.1190

#otherMatches

#Seq PSSM
UCAGGCGGCGGAGGCAGCACC	chr1:28559358-28559606(-)$1	248	124	145	8.5237
ugcugcugcuccugcugcagc	chr15:90744740-90745005(+)$1	265	158	179	8.3309
CCGUGUGGUGGACAUCCGUGG	chr1:1560283-1560561(+)$1	278	106	127	10.3311
GAAACUCCCAACUGGGCAGAU	chr11:62285221-62285458(-)$1	237	102	123	9.0252
UGUCACUGGCUCACCAGAAGC	chr11:62284590-62284832(-)$1	242	124	145	9.2553
CCAUGGACCUCCUGGGCCUCC	chr1:78425988-78426218(-)$1	230	97	118	8.7234
CUGGCACGGGCACCGGCCGAC	chr16:23690168-23690412(+)$1	244	112	133	6.9308
CCCGUAGAUGCUGGUCGCUGA	chr19:1014093-1014326(-)$1	233	176	197	9.2261
GGGGCGGGGGUGCCCCGUCCC	chr19:54967043-54967274(+)$1	231	197	218	7.1059
CUCUUGAAGGAGACUUGAGAG	chr11:62285992-62286249(-)$1	257	142	163	10.5893
GCCAGGACAGGGGUGCAGCUG	chr14:75265156-75265420(+)$1	264	142	163	10.0070
CGCGAAGCUGAGAGGCUUGUG	chrX:47001712-47001940(-)$1	228	120	141	7.3822
GGAAGGACAAAGAUGUCACCU	chr4:13603898-13604173(-)$1	275	217	238	8.8209
UCUCAUUUUUAAAAAAUGAGA	chr17:65909148-65909390(+)$1	242	220	241	7.9415
GCUGGACGGGUGGCUGCAgcg	chr10:101379905-101380194(-)$1	289	185	206	10.0916
UACAGAUGCUGAAGCUGUUAG	chr5:140698988-140699246(-)$1	258	147	168	9.4627
ACUUUACUAACACUAGGAAAA	chr17:2234106-2234415(-)$1	309	110	131	8.9337
GACCGGCGCCUGAGGCUUGCU	chr1:228336383-228336642(+)$1	259	2	23	8.0049
AGCACAGCCUGGUGGCUUGUU	chr14:20819105-20819353(+)$1	248	115	136	8.5871
UGUUUAUUAAACUUAAUGAGU	chr5:143541835-143542064(-)$1	229	164	185	9.3265
ACAAAAGGUAAAAAUCUGUUG	chr12:133367757-133367979(-)$1	222	171	192	8.4935
CAGGUGCUGAAACUAGUUUUG	chr11:47772367-47772618(-)$1	251	38	59	9.0773
UCUGAGCAAAAGAUUGCGAAG	chr4:151772953-151773217(-)$1	264	64	85	8.4230
UGUAUCAGAUGUAUCUAGCAG	chr2:71650719-71650968(+)$1	249	73	94	10.8726
CCGUGCGCAUGUUUGCUGACU	chr19:19021694-19021908(-)$1	214	86	107	8.5977
gacgccccggUGGCGGAGGAC	chr15:80215311-80215577(-)$1	266	126	147	9.2879
GUGGAGGCCUGGCGGUGCCCC	chr16:1836671-1836932(+)$1	261	38	59	10.3060
GCCGUUUGCAGAGGUUACCUG	chr17:8421848-8422072(-)$1	224	95	116	10.3616
CCAGUGAGCGGGGGCGGGAAC	chr8:145620028-145620296(-)$1	268	208	229	9.5768
GCCCCUGCCAACAGGCUGGGG	chr12:6879450-6879672(+)$1	222	158	179	9.8659
GCCAGAGGUUGAUAUCAAAGG	chr11:62291035-62291272(-)$1	237	105	126	12.0943
AGGGCAGUAGAGGUACAGGGC	chr11:62300890-62301145(-)$1	255	115	136	10.7804
UGAAGCUUUGCGGGAAGAAGU	chr4:104081680-104081912(-)$1	232	52	73	9.9750
GCAUGUCCUCUUGGGGAUGUG	chr22:21174739-21174981(-)$1	242	108	129	9.3265
CACUGGUACGUGGGUGAGGGG	chr12:49666689-49666938(+)$1	249	186	207	10.8123
CUCUUGAAGGAGACUUGAGAG	chr11:62285879-62286131(-)$1	252	24	45	10.5893
CCAUGGACCUCCUGGGCCUCC	chr1:78425973-78426188(-)$1	215	67	88	8.7234
GUUGUCUUGGCUUCCACUACA	chr13:98671866-98672136(+)$1	270	119	140	8.2051
GUGAGCUGGAAAACCAAAUUG	chr1:214819016-214819246(+)$1	230	51	72	10.8896
UUAGUUCUGAUAUUAGAUUCA	chr2:153520551-153520772(-)$1	221	79	100	9.3765
CAGGCCCCAUGUCUGUGGGUU	chr11:62400452-62400676(-)$1	224	100	121	9.5460
GUCAGCCACAGAAGUGAGCAA	chr4:13601208-13601464(-)$1	256	29	50	8.6770
UGGGUGCAUACAAGUACAUCC	chr3:23959237-23959462(+)$1	225	114	135	8.3240
UCAGGACCAAAGGUGGAAGGA	chr11:62284828-62285098(-)$1	270	67	88	11.7690
GGACCUGGGGACGCCUAGGUG	chr16:1821053-1821341(-)$1	288	112	133	8.5272
CACCGAGCGCCAGCGUGGCGG	chr8:144999527-144999784(-)$1	257	76	97	10.7379
GAGGAUACCACGAGGGAGGCU	chr1:16054066-16054315(+)$1	249	52	73	10.6526
UGGGAGCUGGAGCCGGAGCUC	chr19:39926240-39926448(-)$1	208	48	69	10.4809
UCUUAGAGCUGGUGCCCUGGA	chr1:39896276-39896531(+)$1	255	164	185	8.8098
CCGGUCAUCAACUGAUCCGCG	chr8:48872501-48872753(-)$1	252	155	176	12.1190

#DB
((.(((.((....)).)).).	chr1:28559358-28559606(-)$1	1	124	145	8.5237
.(((((.((....)).)))))	chr15:90744740-90745005(+)$1	1	158	179	8.3309
(((((.(((....))))))))	chr1:1560283-1560561(+)$1	1	106	127	10.3311
(((((((((....))).)).)	chr11:62285221-62285458(-)$1	1	102	123	9.0252
(((..((((....))))..))	chr11:62284590-62284832(-)$1	1	124	145	9.2553
....((.((....)).))...	chr1:78425988-78426218(-)$1	1	97	118	8.7234
))(((.(((...))))))(((	chr16:23690168-23690412(+)$1	1	112	133	6.9308
(((...(((....))).....	chr19:1014093-1014326(-)$1	1	176	197	9.2261
(((((((((...)))))))))	chr19:54967043-54967274(+)$1	1	197	218	7.1059
(((...(((....))))))))	chr11:62285992-62286249(-)$1	1	142	163	10.5893
(((((..((....))...)))	chr14:75265156-75265420(+)$1	1	142	163	10.0070
(((.(((((....))))))))	chrX:47001712-47001940(-)$1	1	120	141	7.3822
((...((((....)))).)))	chr4:13603898-13604173(-)$1	1	217	238	8.8209
(((((((((...)))))))))	chr17:65909148-65909390(+)$1	1	220	241	7.9415
((((..(((....))))))))	chr10:101379905-101380194(-)$1	1	185	206	10.0916
(((.(((((....)).))).)	chr5:140698988-140699246(-)$1	1	147	168	9.4627
.((((.(((....)))..)))	chr17:2234106-2234415(-)$1	1	110	131	8.9337
(((.((((((...)))..)))	chr1:228336383-228336642(+)$1	1	2	23	8.0049
(....((((....))))))))	chr14:20819105-20819353(+)$1	1	115	136	8.5871
(((((((((....))))))))	chr5:143541835-143542064(-)$1	1	164	185	9.3265
((((.((((....)))).)))	chr12:133367757-133367979(-)$1	1	171	192	8.4935
((.(.((((....))))..).	chr11:47772367-47772618(-)$1	1	38	59	9.0773
.((..((((....))))..))	chr4:151772953-151773217(-)$1	1	64	85	8.4230
(((...(((....))).))))	chr2:71650719-71650968(+)$1	1	73	94	10.8726
((((..(((....)))..)).	chr19:19021694-19021908(-)$1	1	86	107	8.5977
(((((((((....))).)).)	chr15:80215311-80215577(-)$1	1	126	147	9.2879
(.((..(((....)))..)))	chr16:1836671-1836932(+)$1	1	38	59	10.3060
((((...((....))....))	chr17:8421848-8422072(-)$1	1	95	116	10.3616
(((((..((....))....))	chr8:145620028-145620296(-)$1	1	208	229	9.5768
(((((.(((....))).))))	chr12:6879450-6879672(+)$1	1	158	179	9.8659
(((...(((....)))...))	chr11:62291035-62291272(-)$1	1	105	126	12.0943
.((((.(((....)))...))	chr11:62300890-62301145(-)$1	1	115	136	10.7804
(((..((((....))))...)	chr4:104081680-104081912(-)$1	1	52	73	9.9750
(((((((((....))))))))	chr22:21174739-21174981(-)$1	1	108	129	9.3265
((((..(((....)))...))	chr12:49666689-49666938(+)$1	1	186	207	10.8123
(((...(((....))))))))	chr11:62285879-62286131(-)$1	1	24	45	10.5893
....((.((....)).))...	chr1:78425973-78426188(-)$1	1	67	88	8.7234
..(((..(((...)))..)))	chr13:98671866-98672136(+)$1	1	119	140	8.2051
((((..(((....)))..)))	chr1:214819016-214819246(+)$1	1	51	72	10.8896
(((((((((....))))...)	chr2:153520551-153520772(-)$1	1	79	100	9.3765
(((((((((....)).)))))	chr11:62400452-62400676(-)$1	1	100	121	9.5460
(((.(((((....))).))..	chr4:13601208-13601464(-)$1	1	29	50	8.6770
((((((.((....)).)))))	chr3:23959237-23959462(+)$1	1	114	135	8.3240
((....(((....)))...))	chr11:62284828-62285098(-)$1	1	67	88	11.7690
(.(((((((....))))))).	chr16:1821053-1821341(-)$1	1	112	133	8.5272
(.(((.(((....)))..)))	chr8:144999527-144999784(-)$1	1	76	97	10.7379
(((....((....))....))	chr1:16054066-16054315(+)$1	1	52	73	10.6526
((((..(((....)))..)))	chr19:39926240-39926448(-)$1	1	48	69	10.4809
(((.((.((....)).)))))	chr1:39896276-39896531(+)$1	1	164	185	8.8098
(((...(((....)))...))	chr8:48872501-48872753(-)$1	1	155	176	12.1190

#PSSM
f : 0.19	d : 0.18	e : 0.16	i : 0.10	g : 0.08	c : 0.06	# : 0.04	! : 0.04	b : 0.04	[ : 0.02	= : 0.02	: : 0.02	F : 0.02	" : 0.02	
d : 0.19	f : 0.18	e : 0.16	i : 0.10	g : 0.08	# : 0.06	c : 0.06	[ : 0.06	b : 0.04	= : 0.02	F : 0.02	" : 0.02	
f : 0.18	e : 0.14	d : 0.12	g : 0.10	c : 0.10	i : 0.10	# : 0.08	b : 0.08	[ : 0.04	" : 0.02	= : 0.02	a : 0.02	
" : 0.14	d : 0.10	# : 0.10	[ : 0.10	f : 0.10	e : 0.08	i : 0.08	g : 0.06	! : 0.06	c : 0.06	b : 0.06	a : 0.04	= : 0.02	
! : 0.18	" : 0.16	b : 0.14	c : 0.10	i : 0.08	e : 0.06	g : 0.06	d : 0.06	# : 0.06	[ : 0.04	f : 0.04	= : 0.02	
! : 0.18	d : 0.16	b : 0.14	" : 0.14	[ : 0.12	i : 0.08	e : 0.04	c : 0.04	# : 0.04	= : 0.02	f : 0.02	g : 0.02	
c : 0.48	d : 0.16	[ : 0.12	i : 0.08	! : 0.06	e : 0.02	= : 0.02	" : 0.02	g : 0.02	# : 0.02	
c : 0.48	b : 0.23	d : 0.16	i : 0.06	e : 0.02	= : 0.02	g : 0.02	
c : 0.48	b : 0.23	d : 0.16	i : 0.06	e : 0.02	= : 0.02	g : 0.02	
m : 0.90	l : 0.06	c : 0.04	
m : 0.90	l : 0.10	
m : 0.90	l : 0.10	
m : 0.90	l : 0.04	c : 0.02	i : 0.02	= : 0.02	
c : 0.48	b : 0.23	d : 0.16	i : 0.06	e : 0.02	= : 0.02	g : 0.02	
c : 0.48	b : 0.23	d : 0.16	i : 0.06	e : 0.02	= : 0.02	g : 0.02	
c : 0.48	] : 0.16	d : 0.16	i : 0.06	4 : 0.06	3 : 0.02	e : 0.02	= : 0.02	g : 0.02	
d : 0.16	2 : 0.16	3 : 0.12	] : 0.10	b : 0.08	i : 0.08	f : 0.08	4 : 0.06	e : 0.04	g : 0.04	c : 0.04	6 : 0.02	= : 0.02	
2 : 0.21	3 : 0.16	b : 0.14	f : 0.10	e : 0.08	i : 0.08	4 : 0.06	g : 0.04	c : 0.04	] : 0.04	6 : 0.02	= : 0.02	
3 : 0.14	f : 0.12	e : 0.10	b : 0.10	4 : 0.10	c : 0.10	i : 0.08	g : 0.06	2 : 0.06	d : 0.06	] : 0.02	h : 0.02	6 : 0.02	= : 0.02	
e : 0.16	f : 0.14	d : 0.12	c : 0.10	i : 0.08	b : 0.08	g : 0.06	] : 0.06	a : 0.04	4 : 0.04	3 : 0.04	h : 0.02	6 : 0.02	= : 0.02	2 : 0.02	
e : 0.16	d : 0.16	f : 0.16	i : 0.10	c : 0.10	g : 0.08	] : 0.06	4 : 0.04	b : 0.04	h : 0.02	6 : 0.02	= : 0.02	: : 0.02	2 : 0.02	

#score	471.88046356280427
#seq	50
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF241KPE_SDAD1_CDS_m2_run1.txt

#BEAR
fff[bbffffff[bbvvvvvvvvvvvvvbb22	chr8:144940520-144940795(-)$1	275	184	216	28.9168
GGGGG==========ttttttttttt======	chr16:29818737-29818993(+)$1	256	29	61	30.6138
{HHHHHHHHccc[bbtttttttttttbb]ccc	chr10:17271230-17271578(+)$1	348	162	194	30.1843

#otherMatches

#Seq PSSM
UUCGUCAUCGACCCCGUGCGCAACCUGAGGCU	chr8:144940520-144940795(-)$1	275	184	216	28.9168
CCCUCGGGUGCUAUGAAGAUGCCGACCAUGGU	chr16:29818737-29818993(+)$1	256	29	61	30.6138
CGCCCAGGCCAUCGCCACCCUCCGCAGCCAUG	chr10:17271230-17271578(+)$1	348	162	194	30.1843

#DB
(((.((((((((.((.............))..	chr8:144940520-144940795(-)$1	1	184	216	28.9168
(((((((((((((((...........))))))	chr16:29818737-29818993(+)$1	1	29	61	30.6138
.(((((((((((.((...........)).)))	chr10:17271230-17271578(+)$1	1	162	194	30.1843

#PSSM
f : 0.33	G : 0.33	{ : 0.33	
f : 0.33	G : 0.33	H : 0.33	
f : 0.33	G : 0.33	H : 0.33	
[ : 0.33	G : 0.33	H : 0.33	
b : 0.33	G : 0.33	H : 0.33	
b : 0.33	= : 0.33	H : 0.33	
f : 0.33	= : 0.33	H : 0.33	
f : 0.33	= : 0.33	H : 0.33	
f : 0.33	= : 0.33	H : 0.33	
f : 0.33	= : 0.33	c : 0.33	
f : 0.33	= : 0.33	c : 0.33	
f : 0.33	= : 0.33	c : 0.33	
[ : 0.66	= : 0.33	
b : 0.66	= : 0.33	
b : 0.66	= : 0.33	
t : 0.66	v : 0.33	
t : 0.66	v : 0.33	
t : 0.66	v : 0.33	
t : 0.66	v : 0.33	
t : 0.66	v : 0.33	
t : 0.66	v : 0.33	
t : 0.66	v : 0.33	
t : 0.66	v : 0.33	
t : 0.66	v : 0.33	
t : 0.66	v : 0.33	
t : 0.66	v : 0.33	
v : 0.33	= : 0.33	b : 0.33	
v : 0.33	= : 0.33	b : 0.33	
b : 0.33	= : 0.33	] : 0.33	
b : 0.33	= : 0.33	c : 0.33	
2 : 0.33	= : 0.33	c : 0.33	
2 : 0.33	= : 0.33	c : 0.33	

#score	89.71502837556667
#seq	3
#width	32
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF284MRX_PPIG_UTR_m1_run1.txt

#BEAR
!!bb!!ccc[a[ccc!!cccmmmmccc22ccc]a]ccc22	chr11:771206-771470(-)$1	264	89	129	13.5659
gggg[a[ccc[ddddarrrrrrrrra]ddddccc]a]ggg	chr19:4719811-4720054(-)$1	243	32	72	11.9598
gggg!!ccc[eeeee[cccmmmmccc]eeeee333ccc22	chr19:48734817-48735098(-)$1	281	232	272	12.7401
[eeeee[dddd!!bb[cccnnnnnccc]bb22dddd]eee	chr11:65306700-65306922(-)$1	222	105	145	13.0767
c[eeeee[ccc[ccc[cccooooooccc]cccccc22eee	chr9:95997026-95997311(+)$1	285	17	57	15.3263
ee####ccc"""bbffffffooooooffffff333bb333	chr2:234183274-234183528(+)$1	254	123	163	12.8630
%dddd[bb####ccc!!bbnnnnnbb]ccc333bbdddd6	chr17:73699781-73700041(+)$1	260	144	184	12.8261
cccggggggg!!gggggggnnnnnggggggg333gggggg	chrX:23723524-23723787(-)$1	263	128	168	14.5835
ee[=========="""ddddllldddd==========eee	chr20:13370916-13371182(-)$1	266	196	236	14.0054
cc$$$$$gggggggcccooooooccc]ggggggg333ccc	chr12:52467254-52467502(+)$1	248	162	202	14.4072
!bb"""ddddccc"""bboooooobb]ccc]dddd333bb	chr12:50536762-50537028(-)$1	266	152	192	14.6830
ggccc[ccc$$$$$cccooooooccc333ccc]ccc]ggg	chr11:47843203-47843469(-)$1	266	26	66	15.0044
bb[bb[bb!!ccc"""a[aooooooa]a4444ccc22bb]	chr19:49611440-49611691(+)$1	251	67	107	14.7622
dd####eeeee[ccc"""cccmmmmccc333ccceeeeed	chr1:19438921-19439178(-)$1	257	92	132	12.3192
""ggggggg!!bb!!cccrrrrrrrrrccc333bb22ggg	chr16:89977468-89977780(+)$1	312	174	214	13.1473
fffa[ccc####cccrrrrrrrrrccc4444ccc333a]f	chr16:67863223-67863441(-)$1	218	62	102	13.8212
bb!!a[ccc"""ddddrrrrrrrrrdddd4444ccca22b	chr12:6625901-6626148(+)$1	247	187	227	11.7279
==####==========[aooooooa]==============	chr17:73663347-73663576(+)$1	229	98	138	17.5668
ee[==========="""bbmmmmbb333===========]	chr16:22274329-22274611(+)$1	282	225	265	15.1208
ggg[iiiiiiiii"""cccmmmmccc22iiiiiiiii]gg	chrX:9469719-9469980(+)$1	261	15	55	14.6423
!=============eeeeennnnneeeee22=========	chr20:44523230-44523479(+)$1	249	128	168	14.5184
cccc!!ccc[bb[ccc!!ammmma4444cccbb22ccc]c	chr19:11258561-11258886(-)$1	325	150	190	12.3331
c:::===========!!aooooooa333===========:	chr3:186504827-186505047(+)$1	220	63	103	13.8031
dd[dddd[eeeee"""cccooooooccc333eeeee22dd	chr9:116997814-116998023(+)$1	209	31	71	14.4243
b[ccc[eeeee[ccccccrrrrrrrrrccc]ccceeeee2	chr13:111287715-111288050(+)$1	335	219	259	12.1465
=dddd[dddd!!ccc[cccnnnnnccc]ccc22ddddddd	chr4:1987713-1988001(-)$1	288	87	127	14.1201
[iiiiiiiii!!bb[ddddnnnnndddd]bb]iiiiiiii	chr11:62400563-62400808(-)$1	245	154	194	13.5819
eee[ggggggga"""ddddnnnnndddd333a]ggggggg	chr14:24613300-24613507(-)$1	207	127	167	14.1683
iiiii!!eeeee[bb[bboooooobbbb]eeeee4444ii	chr20:43565190-43565473(+)$1	283	66	106	13.7823
ggggg####ggggggga[ammmma]a]ggggggg22gggg	chr7:76026881-76027170(-)$1	289	8	48	13.0788
fffff!!ccc[ccc!!cccnnnnnccc333cccccc]fff	chr2:220432895-220433147(-)$1	252	161	201	15.7754
cdddd!!hhhhhhhh[cccooooooccchhhhhhhh4444	chr14:24610017-24610276(-)$1	259	82	122	12.7011
!!dddd[ccc!!ccc[bbnnnnnbb]ccccccdddd22ff	chr17:37816583-37816862(+)$1	279	41	81	12.8897
ffffff!!bb####bbbboooooobb]bb333bb]fffff	chr3:47889721-47889970(+)$1	249	121	161	12.2049
gg!!ccc[eeeeeccccccnnnnnccc]ccc]eeeeeccc	chr15:28513636-28513860(-)$1	224	34	74	13.8964
fffff!!ddddccc!!cccooooooccc]ccc]dddd999	chr11:1009223-1009455(+)$1	232	88	128	12.6599
dd[a!!dddd!!ffffffnnnnnffffff22dddd22a]d	chr9:117005686-117005930(+)$1	244	99	139	12.0650
ddddddd[ccc[a[cccbbnnnnnbb]ccc]a]cccdddd	chr20:61917617-61917858(+)$1	241	4	44	13.3368
eee[cccccc[ccc[cccoooooocccccc]ccc22ccc]	chr4:843642-843889(-)$1	247	19	59	15.8776
========="""eeeeeooooooeeeee4444========	chr1:32792438-32792658(+)$1	220	49	89	14.7535
dd[iiiiiiiii[bb!!bbnnnnnbb22bb333iiiiiii	chr5:140021212-140021463(+)$1	251	183	223	14.8537
gggggggcccadddd[abbnnnnnbb]a]dddd]a]ccc]	chr16:67268161-67268406(-)$1	245	106	146	13.1643
gggggdddd[a[ccc[acccooooooccc22a]ccc]add	chr17:72769700-72769926(-)$1	226	151	191	14.3849
ccc!!eeeee!!gggggggnnnnnggggggg>>>>>>>>>	chr9:117062857-117063067(+)$1	210	151	191	12.2462
ee####ccc"""ccc[cccnnnnncccccc]ccc333eee	chr18:47802940-47803217(-)$1	277	181	221	17.4363
dd!!iiiiiiiii####bblllbbiiiiiiiiidddd]a]	chr9:117051101-117051317(+)$1	216	66	106	13.0859
ddd[bbeeeee[ffffffooooooffffff]eeeee4444	chr17:75085198-75085461(+)$1	263	209	249	12.1323
=[bb####ccc!!bb[cccmmmmccc]bb22cccbb====	chr11:498740-499030(-)$1	290	188	228	12.9338
ccc####eeeee"""cccooooooccc22eeeee22ccc]	chr17:34859722-34859969(-)$1	247	180	220	14.7576
eeee===========[cccooooooccc]===========	chr2:122125291-122125508(-)$1	217	115	155	17.2910

#otherMatches

#Seq PSSM
CCGCUCGUGGUGGAGGACUUCGUGAAGGAUUCGGGCGCCU	chr11:771206-771470(-)$1	264	89	129	13.5659
GGGCAGGAGCGCCCACUCCCCACCUGCUGGGGUUGCAGCC	chr19:4719811-4720054(-)$1	243	32	72	11.9598
GUGUGUAggccaggcgugguggcucaggccuguaaucucg	chr19:48734817-48735098(-)$1	281	232	272	12.7401
UCCCGCGCCCGCUGCGUGGGUGAGCCGGGCUUcgggggug	chr11:65306700-65306922(-)$1	222	105	145	13.0767
GGGCCCGUGGCCAGCUGACAGCUGCGUCUGUUGCUUCCGG	chr9:95997026-95997311(+)$1	285	17	57	15.3263
GUACCAGCUACUGCCUUGUGUGUCUUCGUAAGUAUGCUUC	chr2:234183274-234183528(+)$1	254	123	163	12.8630
CUAUGAGGCAUUAGGUAGCCUUUCGUCCCUCCUCCCAUAU	chr17:73699781-73700041(+)$1	260	144	184	12.8261
AUGAACUUGCGUGGGCUACUGCUUGUAGCUUUGGGUGAGU	chrX:23723524-23723787(-)$1	263	128	168	14.5835
GCGUCUCAGAGGCAUUUCAGAACCUGAGCUUUUGGGGGUU	chr20:13370916-13371182(-)$1	266	196	236	14.0054
UGGGUUACUGGGUGCAGGAUGAACUGUCGCUCGGAGGUGC	chr12:52467254-52467502(+)$1	248	162	202	14.4072
ACUAAAUUCUGUGAAAGCAUGUAAGUACGCAAGGAGGGAG	chr12:50536762-50537028(-)$1	266	152	192	14.6830
AAAAGUAAGUCACCGUGAACUACUACUUUCUUUCUUAUUU	chr11:47843203-47843469(-)$1	266	26	66	15.0044
ugaccgcgagcacaaacggggggagcggggcagugagcgg	chr19:49611440-49611691(+)$1	251	67	107	14.7622
UUAUAAUCUUCGCCGAGGGGCUGCGGCCAUGCGGGAGGAG	chr1:19438921-19439178(-)$1	257	92	132	12.3192
CUGAGCGUCCGCAGAGGUGACCGAAAAGCCGUAUGAUGAU	chr16:89977468-89977780(+)$1	312	174	214	13.1473
GGCCAGGCGACAUCAUCAGUUUCUUGAGCCAGCCCCAGCG	chr16:67863223-67863441(-)$1	218	62	102	13.8212
CAGAGACCAGUUCUUGGAUACUUUACAAGCCCAUGGCCAU	chr12:6625901-6626148(+)$1	247	187	227	11.7279
GAAUAAGAUGGCGGGGAAGAAGAAUGUUCUGUCGUCUCUC	chr17:73663347-73663576(+)$1	229	98	138	17.5668
UUAUCCUCCAGGAAAAUGaaaacuccccuuccuggagggg	chr16:22274329-22274611(+)$1	282	225	265	15.1208
UGGGAUAAUAGUGACUUUAUUAUUGAUAUACUAUUAUGCU	chrX:9469719-9469980(+)$1	261	15	55	14.6423
GAGGGGUGCCCAGCCAUUUUAGGUAGGUGCUGCUGGGUGC	chr20:44523230-44523479(+)$1	249	128	168	14.5184
GGAGAAGGAGGUCGACGAGGACACGACAGUCACAAUCCCC	chr19:11258561-11258886(-)$1	325	150	190	12.3331
UAACUUUAACUUCUAAACAUUACAGGAAUGGAAGUUGGAU	chr3:186504827-186505047(+)$1	220	63	103	13.8031
CCAUUGUAACCUUCUUUGCUGGUGUGUACUUAGGGUGAAC	chr9:116997814-116998023(+)$1	209	31	71	14.4243
GGUGAGUGGCGGCUGCCCUCUGUGCAUGGGCCAGUGCCAG	chr13:111287715-111288050(+)$1	335	219	259	12.1465
GCAGCUGCUGGACAUCUCUGAGCUGGAUAUGGUUGGCGCU	chr4:1987713-1988001(-)$1	288	87	127	14.1201
UGAGGGGCUCGGGUUCCUUGGGCUGGGGUGCAGGGCUCCU	chr11:62400563-62400808(-)$1	245	154	194	13.5819
AGCAUUGGGGGCAGUAGGAGCAUUUCUUUGGGACCCCCAG	chr14:24613300-24613507(-)$1	207	127	167	14.1683
UGUGUCCCCGGCACCAUGCAGGUCCAGGAGCCGGCUGUGC	chr20:43565190-43565473(+)$1	283	66	106	13.7823
CCCCCAUCCCCAGGUGAGGGCAGCGUACGCCUGGUAGGGG	chr7:76026881-76027170(-)$1	289	8	48	13.0788
CCGUGCUGGAAUGUAAAGUACCCAACUCCCGCAUCCCCAC	chr2:220432895-220433147(-)$1	252	161	201	15.7754
UGGCCCCUUUCCUACGACAGGUGGAUGUGUGGGGAGCACA	chr14:24610017-24610276(-)$1	259	82	122	12.7011
AAGGGUUGGUCUGCCCGAGCCCAUCUGGCACCACCCAGCC	chr17:37816583-37816862(+)$1	279	41	81	12.8897
GCUGCAAGCGAAAAUCCACAUGCCUGAGAAGACGGUGCGG	chr3:47889721-47889970(+)$1	249	121	161	12.2049
AGCUGAGCUGGUUUCAUUUUCCUUGGACUGAUGACUACUU	chr15:28513636-28513860(-)$1	224	34	74	13.8964
UUGCUGUUUCUCACAGUCCACAGCAGGAAGUGCAGAACAU	chr11:1009223-1009455(+)$1	232	88	128	12.6599
GGGUCAGCCUGGCAGGAAGGGGUUUCCUGGGAGGCCCGGC	chr9:117005686-117005930(+)$1	244	99	139	12.0650
AGCGGGACGGCGCGUGCCGGCUUGCGUGUGGGGGCCUCCU	chr20:61917617-61917858(+)$1	241	4	44	13.3368
CGUGUCUCCCGCAGCUCCUGGACUGGAUUGAGGGCAAGGA	chr4:843642-843889(-)$1	247	19	59	15.8776
GAAGGGGAGAGUGGCUUAGUAACAGGCUUAUGUUCUCUUU	chr1:32792438-32792658(+)$1	220	49	89	14.7535
GUUGGGGCUCUGAGGGAUGGACCACAAGCUAAGCAGGGCU	chr5:140021212-140021463(+)$1	251	183	223	14.8537
ACUUGCCGGGGCCAUGCCCAAUGAGGCGGGUGGACACCCA	chr16:67268161-67268406(-)$1	245	106	146	13.1643
GAGCCGCUGACCCUGGAGCAGGAGUAUGCCAUGCAGUGCA	chr17:72769700-72769926(-)$1	226	151	191	14.3849
AGGCCCAAGGUUGGCCAGCCAUCAGCUGGCCUGUCUUCAU	chr9:117062857-117063067(+)$1	210	151	191	12.2462
UCGAGGUGAGUGGCCUCCAGAGGAUGGGGCAUCGGGAGAU	chr18:47802940-47803217(-)$1	277	181	221	17.4363
CUCACCUGUCUCUCUUUGGCUUCCAGGGACAGGAGGGUGU	chr9:117051101-117051317(+)$1	216	66	106	13.0859
CUGUGUUGUUGAGCCUGCCAAGUUGUGGGUGCAGCAUGGU	chr17:75085198-75085461(+)$1	263	209	249	12.1323
AGCAACAAGCUGGGUGAUGUGGGCAUGGCGGAGCUGUGCC	chr11:498740-499030(-)$1	290	188	228	12.9338
GUGAGUGGGCUCGAUCACGGCACAGUGCAGGGCCAGUACA	chr17:34859722-34859969(-)$1	247	180	220	14.7576
GGGCGCUGCCUCCCCUGCCACUGAGGGCCGGGGGGGUAGU	chr2:122125291-122125508(-)$1	217	115	155	17.2910

#DB
..((..(((.(.(((..(((....)))..))).).)))..	chr11:771206-771470(-)$1	1	89	129	13.5659
((((.(.(((.(((((.........).))))))).).)))	chr19:4719811-4720054(-)$1	1	32	72	11.9598
((((..(((.(((((.(((....))).)))))...)))..	chr19:48734817-48735098(-)$1	1	232	272	12.7401
.(((((.((((..((.(((.....))).))..)))).)))	chr11:65306700-65306922(-)$1	1	105	145	13.0767
(.(((((.(((.(((.(((......))).))))))..)))	chr9:95997026-95997311(+)$1	1	17	57	15.3263
((....(((...((((((((......))))))...))...	chr2:234183274-234183528(+)$1	1	123	163	12.8630
.((((.((....(((..((.....)).)))...)))))).	chr17:73699781-73700041(+)$1	1	144	184	12.8261
((((((((((..(((((((.....)))))))...))))))	chrX:23723524-23723787(-)$1	1	128	168	14.5835
((.((((((((((...((((...)))))))))))))))))	chr20:13370916-13371182(-)$1	1	196	236	14.0054
((.....((((((((((......))).)))))))...)))	chr12:52467254-52467502(+)$1	1	162	202	14.4072
.((...(((((((...((......)).))).))))...))	chr12:50536762-50537028(-)$1	1	152	192	14.6830
(((((.(((.....(((......)))...))).))).)))	chr11:47843203-47843469(-)$1	1	26	66	15.0044
((.((.((..(((...(.(......).)....)))..)).	chr19:49611440-49611691(+)$1	1	67	107	14.7622
((....(((((.(((...(((....)))...)))))))))	chr1:19438921-19439178(-)$1	1	92	132	12.3192
..(((((((..((..(((.........)))...))..)))	chr16:89977468-89977780(+)$1	1	174	214	13.1473
((((.(((....(((.........)))....)))...).)	chr16:67863223-67863441(-)$1	1	62	102	13.8212
((..(.(((...((((.........))))....))))..)	chr12:6625901-6626148(+)$1	1	187	227	11.7279
((....((((((((((.(......).))))))))))))))	chr17:73663347-73663576(+)$1	1	98	138	17.5668
((.(((((((((((...((....))...))))))))))).	chr16:22274329-22274611(+)$1	1	225	265	15.1208
(((.(((((((((...(((....)))..))))))))).))	chrX:9469719-9469980(+)$1	1	15	55	14.6423
.((((((((((((((((((.....)))))..)))))))))	chr20:44523230-44523479(+)$1	1	128	168	14.5184
)(((..(((.((.(((..(....)....)))))..))).)	chr19:11258561-11258886(-)$1	1	150	190	12.3331
)...(((((((((((..(......)...))))))))))).	chr3:186504827-186505047(+)$1	1	63	103	13.8031
((.((((.(((((...(((......)))...)))))..))	chr9:116997814-116998023(+)$1	1	31	71	14.4243
(.(((.(((((.((((((.........))).)))))))).	chr13:111287715-111288050(+)$1	1	219	259	12.1465
)((((.((((..(((.(((.....))).)))..)))))))	chr4:1987713-1988001(-)$1	1	87	127	14.1201
.(((((((((..((.((((.....)))).)).))))))))	chr11:62400563-62400808(-)$1	1	154	194	13.5819
(((.((((((((...((((.....))))...).)))))))	chr14:24613300-24613507(-)$1	1	127	167	14.1683
(((((..(((((.((.((......)))).)))))....))	chr20:43565190-43565473(+)$1	1	66	106	13.7823
(((((....((((((((.(....).).)))))))..))))	chr7:76026881-76027170(-)$1	1	8	48	13.0788
(((((..(((.(((..(((.....)))...)))))).)))	chr2:220432895-220433147(-)$1	1	161	201	15.7754
(((((..((((((((.(((......)))))))))))....	chr14:24610017-24610276(-)$1	1	82	122	12.7011
..((((.(((..(((.((.....)).))))))))))..))	chr17:37816583-37816862(+)$1	1	41	81	12.8897
((((((..((....((((......)).))...)).)))))	chr3:47889721-47889970(+)$1	1	121	161	12.2049
((..(((.(((((((((((.....))).))).))))))))	chr15:28513636-28513860(-)$1	1	34	74	13.8964
(((((..(((((((..(((......))).))).))))...	chr11:1009223-1009455(+)$1	1	88	128	12.6599
((.(..((((..((((((.....))))))..))))..).)	chr9:117005686-117005930(+)$1	1	99	139	12.0650
(((((((.(((.(.(((((.....)).))).).)))))))	chr20:61917617-61917858(+)$1	1	4	44	13.3368
(((.((((((.(((.(((......)))))).)))..))).	chr4:843642-843889(-)$1	1	19	59	15.8776
(((((((((...(((((......)))))....))))))))	chr1:32792438-32792658(+)$1	1	49	89	14.7535
((.(((((((((.((..((.....))..))...)))))))	chr5:140021212-140021463(+)$1	1	183	223	14.8537
(((((((((((((((.(((.....)).).)))).).))).	chr16:67268161-67268406(-)$1	1	106	146	13.1643
)))))((((.(.(((.((((......)))..).))).)))	chr17:72769700-72769926(-)$1	1	151	191	14.3849
(((..(((((..(((((((.....))))))).........	chr9:117062857-117063067(+)$1	1	151	191	12.2462
((....(((...(((.(((.....)))))).)))...)))	chr18:47802940-47803217(-)$1	1	181	221	17.4363
((..(((((((((....((...))))))))))))))).).	chr9:117051101-117051317(+)$1	1	66	106	13.0859
(((.(((((((.((((((......)))))).)))))....	chr17:75085198-75085461(+)$1	1	209	249	12.1323
(.((....(((..((.(((....))).))..)))))))))	chr11:498740-499030(-)$1	1	188	228	12.9338
(((....(((((...(((......)))..)))))..))).	chr17:34859722-34859969(-)$1	1	180	220	14.7576
))))(((((((((((.(((......))).)))))))))))	chr2:122125291-122125508(-)$1	1	115	155	17.2910

#PSSM
g : 0.16	c : 0.16	e : 0.14	d : 0.14	! : 0.08	f : 0.08	= : 0.08	b : 0.06	[ : 0.04	% : 0.02	" : 0.02	i : 0.02	
d : 0.19	g : 0.16	e : 0.16	c : 0.10	f : 0.08	[ : 0.06	b : 0.06	= : 0.06	! : 0.04	i : 0.04	" : 0.02	: : 0.02	
g : 0.14	d : 0.12	c : 0.12	[ : 0.12	e : 0.10	# : 0.08	f : 0.08	b : 0.06	! : 0.06	= : 0.04	i : 0.04	$ : 0.02	: : 0.02	
g : 0.14	d : 0.12	# : 0.10	= : 0.08	! : 0.08	[ : 0.08	b : 0.06	e : 0.06	c : 0.06	i : 0.06	f : 0.06	a : 0.04	$ : 0.02	" : 0.02	: : 0.02	
# : 0.12	d : 0.12	g : 0.12	= : 0.12	! : 0.10	i : 0.10	c : 0.08	f : 0.06	[ : 0.04	e : 0.04	b : 0.04	$ : 0.02	" : 0.02	a : 0.02	
! : 0.16	# : 0.14	[ : 0.12	= : 0.12	g : 0.08	i : 0.08	d : 0.08	e : 0.06	c : 0.06	a : 0.02	$ : 0.02	" : 0.02	f : 0.02	b : 0.02	
c : 0.19	= : 0.14	d : 0.12	e : 0.10	! : 0.10	g : 0.08	i : 0.08	[ : 0.06	# : 0.06	b : 0.04	$ : 0.02	
c : 0.25	= : 0.14	d : 0.12	e : 0.12	[ : 0.08	g : 0.08	i : 0.08	b : 0.04	# : 0.04	h : 0.02	! : 0.02	
c : 0.30	e : 0.16	= : 0.14	d : 0.12	g : 0.08	i : 0.08	# : 0.06	! : 0.02	h : 0.02	b : 0.02	
c : 0.16	e : 0.16	= : 0.12	d : 0.10	[ : 0.08	" : 0.08	g : 0.08	i : 0.08	# : 0.04	! : 0.04	$ : 0.02	h : 0.02	b : 0.02	
e : 0.16	! : 0.14	= : 0.12	c : 0.10	" : 0.08	a : 0.06	[ : 0.06	# : 0.06	g : 0.06	i : 0.06	d : 0.04	$ : 0.02	b : 0.02	h : 0.02	
! : 0.16	[ : 0.14	= : 0.12	e : 0.10	c : 0.10	" : 0.08	# : 0.06	i : 0.06	d : 0.04	g : 0.04	b : 0.04	$ : 0.02	a : 0.02	h : 0.02	
c : 0.30	= : 0.12	e : 0.08	g : 0.08	d : 0.06	b : 0.06	[ : 0.06	! : 0.04	i : 0.04	" : 0.04	f : 0.04	$ : 0.02	h : 0.02	# : 0.02	a : 0.02	
c : 0.30	" : 0.14	b : 0.12	= : 0.10	g : 0.08	d : 0.06	e : 0.04	# : 0.04	f : 0.04	$ : 0.02	! : 0.02	h : 0.02	[ : 0.02	
c : 0.30	" : 0.16	b : 0.10	d : 0.06	e : 0.06	f : 0.06	g : 0.06	! : 0.06	= : 0.06	[ : 0.04	h : 0.02	# : 0.02	
[ : 0.23	c : 0.18	" : 0.14	! : 0.12	f : 0.06	g : 0.06	d : 0.06	e : 0.04	a : 0.02	r : 0.02	= : 0.02	b : 0.02	# : 0.02	
c : 0.40	! : 0.10	b : 0.08	a : 0.08	r : 0.06	f : 0.06	d : 0.06	g : 0.04	" : 0.04	e : 0.04	[ : 0.02	# : 0.02	
c : 0.38	b : 0.19	r : 0.06	f : 0.06	d : 0.06	o : 0.06	g : 0.04	[ : 0.04	a : 0.04	" : 0.02	e : 0.02	! : 0.02	
c : 0.32	o : 0.21	b : 0.12	r : 0.10	d : 0.06	a : 0.06	g : 0.04	n : 0.04	f : 0.02	e : 0.02	
o : 0.34	n : 0.32	m : 0.12	r : 0.10	c : 0.06	f : 0.02	d : 0.02	l : 0.02	
o : 0.38	n : 0.32	m : 0.14	r : 0.10	l : 0.04	c : 0.02	
o : 0.38	n : 0.32	m : 0.16	r : 0.10	l : 0.04	
o : 0.38	n : 0.32	m : 0.16	r : 0.10	l : 0.02	b : 0.02	
o : 0.32	n : 0.27	r : 0.10	c : 0.10	b : 0.06	m : 0.04	a : 0.04	d : 0.02	f : 0.02	e : 0.02	
c : 0.27	b : 0.18	o : 0.16	r : 0.08	d : 0.06	g : 0.04	a : 0.04	e : 0.04	f : 0.04	m : 0.02	4 : 0.02	] : 0.02	i : 0.02	
c : 0.40	b : 0.14	d : 0.08	a : 0.06	o : 0.04	g : 0.04	r : 0.04	] : 0.04	3 : 0.04	e : 0.04	f : 0.04	4 : 0.02	i : 0.02	
c : 0.34	] : 0.21	d : 0.08	f : 0.06	3 : 0.06	g : 0.04	r : 0.04	2 : 0.04	e : 0.04	= : 0.02	4 : 0.02	b : 0.02	i : 0.02	
c : 0.30	2 : 0.08	d : 0.08	g : 0.08	3 : 0.08	e : 0.06	] : 0.06	f : 0.06	b : 0.06	= : 0.04	a : 0.04	4 : 0.04	i : 0.02	
c : 0.23	] : 0.12	3 : 0.10	b : 0.08	g : 0.08	= : 0.08	f : 0.06	4 : 0.06	2 : 0.04	d : 0.04	e : 0.04	i : 0.04	h : 0.02	
c : 0.30	= : 0.10	3 : 0.10	g : 0.08	4 : 0.08	2 : 0.08	e : 0.06	b : 0.06	d : 0.04	f : 0.04	i : 0.04	h : 0.02	
c : 0.18	3 : 0.14	] : 0.12	2 : 0.10	= : 0.10	g : 0.08	4 : 0.08	e : 0.06	d : 0.04	i : 0.04	f : 0.02	b : 0.02	h : 0.02	
c : 0.25	= : 0.12	e : 0.10	3 : 0.10	d : 0.06	4 : 0.06	a : 0.06	2 : 0.04	g : 0.04	i : 0.04	] : 0.04	f : 0.02	b : 0.02	h : 0.02	> : 0.02	
c : 0.19	= : 0.14	] : 0.12	3 : 0.12	d : 0.10	e : 0.10	i : 0.06	g : 0.04	b : 0.04	4 : 0.02	2 : 0.02	h : 0.02	> : 0.02	
c : 0.27	d : 0.14	= : 0.14	e : 0.10	3 : 0.06	b : 0.06	g : 0.06	i : 0.06	a : 0.02	2 : 0.02	h : 0.02	] : 0.02	> : 0.02	
d : 0.14	c : 0.14	= : 0.14	3 : 0.10	e : 0.10	2 : 0.08	] : 0.06	b : 0.06	i : 0.06	g : 0.04	4 : 0.02	h : 0.02	a : 0.02	> : 0.02	
c : 0.16	2 : 0.14	= : 0.14	d : 0.12	e : 0.10	3 : 0.08	i : 0.06	b : 0.04	g : 0.04	a : 0.02	4 : 0.02	h : 0.02	f : 0.02	] : 0.02	> : 0.02	
= : 0.16	c : 0.12	2 : 0.12	] : 0.10	d : 0.10	3 : 0.08	g : 0.06	e : 0.06	i : 0.06	4 : 0.06	b : 0.02	a : 0.02	f : 0.02	> : 0.02	
c : 0.16	= : 0.14	g : 0.12	e : 0.12	d : 0.06	a : 0.06	2 : 0.06	4 : 0.06	3 : 0.04	] : 0.04	i : 0.04	f : 0.04	b : 0.02	9 : 0.02	> : 0.02	
g : 0.14	= : 0.14	e : 0.12	d : 0.10	c : 0.10	2 : 0.06	] : 0.06	i : 0.06	f : 0.06	b : 0.04	4 : 0.04	3 : 0.02	9 : 0.02	> : 0.02	a : 0.02	
g : 0.14	] : 0.12	d : 0.12	= : 0.10	e : 0.08	f : 0.08	2 : 0.06	c : 0.06	i : 0.06	b : 0.04	4 : 0.04	3 : 0.02	6 : 0.02	: : 0.02	9 : 0.02	> : 0.02	

#score	692.5546896924799
#seq	50
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF889CCS_GPKOW_transcript_m2_run1.txt

#BEAR
ccc[eeeee!!bb[aooooooabb]eeeee]cccccc	chrX:102470087-102470349(+)$1	262	17	54	12.9008
#ffffff[ccc[cccnnnnncccccc]ffffff4444	chr2:97560413-97560671(-)$1	258	207	244	11.9543
cc[bb[ccc[eeeeeooooooeeeee]ccc]bb]ccc	chr1:226252063-226252314(+)$1	251	81	118	13.5894
!!ggggggg"""cccnnnnnccc333gggggggdddd	chr8:124381964-124382314(-)$1	350	246	283	13.9571
iiiiiiiiia!!ddddllldddd4444a]iiiiiiii	chr1:162487782-162488024(+)$1	242	163	200	13.9346
!!ggggggg[ffffffnnnnnffffff]ggggggg22	chr22:38887991-38888229(-)$1	238	141	178	12.1964
ggggggg####ddddnnnnndddd4444ggggggg>>	chr3:167437922-167438187(-)$1	265	22	59	13.1406
[eeeee[===========lll===========eeeee	chr7:92204977-92205242(-)$1	265	221	258	13.6052
e[ffffff!!ccc[aooooooa]ccc22ffffff]ee	chr1:145440710-145440934(+)$1	224	80	117	13.3986
eeeee!!ccceeeeeooooooeeeee]ccceeeee99	chr6:135371558-135371811(-)$1	253	148	185	11.8859
cc[bb[ccc[a!!cccnnnnnccc22a]ccc]bb]cc	chr6:28876612-28876888(-)$1	276	163	200	12.5166
[ggggggga[gggggggmmmmggggggg]a333gggg	chr12:80238961-80239220(-)$1	259	11	48	11.9899
!bb[ccc[gggggggoooooogggggggccc]bb22b	chr22:21965252-21965514(+)$1	262	74	111	14.1327
ddggggggg[a[cccooooooccc]aggggggg22dd	chrX:64744622-64744896(-)$1	274	132	169	15.2255
eeeee!!ccceeeeeooooooeeeee>>>>>>>>>>>	chr5:43292955-43293176(-)$1	221	2	39	11.4436
BBeeeee[ccc[cccooooooccc]ccc333eeeee:	chr15:93470467-93470703(+)$1	236	198	235	11.8000
iiiiii$$$$$ddddooooooddddiiiiiiiii:cc	chr4:128812140-128812399(+)$1	259	130	167	14.1797
""ffffff[gggggggnnnnnggggggg]ffffff33	chr12:133251275-133251522(-)$1	247	119	156	11.9113
!!iiiiiiiiicccmmmmccc333iiiiiiiiiffff	chr7:143079207-143079460(+)$1	253	25	62	11.8105
============rrrrrrrrr==============22	chr1:212240102-212240361(+)$1	259	172	209	15.3902
========ddddcccooooooccc]dddd]=======	chr9:131720163-131720463(+)$1	300	110	147	15.9951
$ccc!!cccgggggggnnnnnggggggg]ccc333cc	chr2:232576556-232576794(+)$1	238	18	55	12.8083
###iiiiiiiii!!aooooooa22iiiiiiiii5555	chr1:65890927-65891243(+)$1	316	191	228	14.5861
b####ccc[dddd[aooooooa]ddddccc22bb]dd	chrX:12994157-12994406(+)$1	249	137	174	12.9239
ccc[cccbb[eeeeeooooooeeeee]bb]ccc]ccc	chr7:23030538-23030803(-)$1	265	192	229	13.2365
=============ssssssssss=============:	chr3:195789725-195789961(-)$1	236	1	38	12.5044
==========eeeeerrrrrrrrreeeee4444====	chr10:103573195-103573473(-)$1	278	178	215	12.7691
[bb####ccc[arrrrrrrrra]ccc333bb]dddd4	chr5:180651146-180651430(+)$1	284	225	262	11.0177
iiiiiiiiibbddddoooooodddd]bb]iiiiiiii	chr3:47210552-47210789(+)$1	237	3	40	15.0150
[dddd[ccc!!a!!ccclllccc22a4444ccc]ddd	chr3:195791070-195791296(-)$1	226	76	113	11.7242
==========[eeeeennnnneeeee]==========	chr12:123665593-123665869(-)$1	276	33	70	15.1264
eeeee[dddd!!cccooooooccc22ddddeeeee33	chr3:9475403-9475658(+)$1	255	152	189	12.9748
!ccc####bb"""bboooooobb333bb4444ccc]e	chr16:2818316-2818575(+)$1	259	73	110	13.7405
===========!!bbannnnna]bb22==========	chr11:62655638-62655886(+)$1	248	194	231	15.3141
==========[ddddllldddd]==========:fff	chr17:45696381-45696668(+)$1	287	177	214	13.0650
$$$$dddd!!eeeeeooooooeeeeedddd333bb]c	chr11:62655497-62655742(+)$1	245	140	177	12.3936
ccc!!dddd!!ddddoooooodddd22dddd22cccc	chr3:63531052-63531297(+)$1	245	99	136	12.7659
iiiiiiiiia!!ddddllldddd4444a]iiiiiiii	chr1:162487854-162488078(+)$1	224	91	128	13.9346
[a[iiiiiiiii[cccmmmmccc]iiiiiiiii]a>>	chr22:50356191-50356454(+)$1	263	194	231	13.8115
========"""ccccccmmmmccc]ccc333======	chr7:53843823-53844054(+)$1	231	120	157	14.0894
"""==========[aooooooa]==========5555	chr16:56968986-56969277(+)$1	291	30	67	16.2386
ff!!bb[cccaddddoooooodddd333a]cccbb22	chr5:33277857-33278118(-)$1	261	82	119	13.8184
:===========[bbmmmmbb]===========:ggg	chr1:236395999-236396285(-)$1	286	126	163	11.6028
dddd[==========oooooo==========]dddd2	chr19:9533943-9534174(-)$1	231	155	192	16.1299
"""ccc!!gggggggooooooggggggg]cccbb]cc	chr16:23428298-23428563(-)$1	265	83	120	15.1665
===========[ddddmmmmdddd]===========:	chr7:158669199-158669482(+)$1	283	231	268	13.8009
ggg[ccc[a[a[a[arrrrrrrrra]a]a]a22ccc]	chr2:97560069-97560324(-)$1	255	71	108	12.0787
[cccggggggg[cccrrrrrrrrrccc]ggggggg]c	chr4:83821021-83821278(-)$1	257	148	185	12.7754
[ggggggg!!bb[bboooooobb]bb22ggggggg]d	chr2:171863019-171863281(-)$1	262	160	197	13.9347
dddd[bb!!dddd[aooooooadddd22bb]dddd22	chr1:19499983-19500224(-)$1	241	51	88	11.8673
+++gggggggccc[annnnna]ccc333gggggggff	chr6:43594027-43594270(-)$1	243	178	215	11.8026
!==============oooooo==============33	chr6:43742049-43742295(+)$1	246	142	179	19.3631
g!!dddd[ccc!!bboooooobb22ccc]dddd22gg	chr17:25635509-25635765(+)$1	256	155	192	12.5145

#otherMatches

#Seq PSSM
GGUGGCCCUGAGGACGUGUGGGCCAGGGGCGGCCCCG	chrX:102470087-102470349(+)$1	262	17	54	12.9008
GGUCUGUGUAUGUCAgugaguggguagguagaugggg	chr2:97560413-97560671(-)$1	258	207	244	11.9543
CUCUACUGGAGGGGUGAAGAAACCUCAUCGUUACAGG	chr1:226252063-226252314(+)$1	251	81	118	13.5894
AUUGGAAAGUAAGUGCUAUACAUACUCUUUCCAGGAG	chr8:124381964-124382314(-)$1	350	246	283	13.9571
UACUUGUUCCAAAGGAAAAUCCUGGCAGAGGACAAGU	chr1:162487782-162488024(+)$1	242	163	200	13.9346
GCUACAGAUGUAGCCUCCCGUGGGCUAGGUUUGUAUA	chr22:38887991-38888229(-)$1	238	141	178	12.1964
CUUUUCAUAAAAUAGGAACUCUGUAAUUUGGAAAGGA	chr3:167437922-167438187(-)$1	265	22	59	13.1406
CAAUAAUGUGUAUCUCUUUUUAAGAGAUAUAUUUAUU	chr7:92204977-92205242(-)$1	265	221	258	13.6052
GAGCCAGACCUAAUGUCUUUUCUUUGUUUCUGGUCUA	chr1:145440710-145440934(+)$1	224	80	117	13.3986
UAGUCGUUCAAGGACUGGAGUGUUCUGUGAGACUGua	chr6:135371558-135371811(-)$1	253	148	185	11.8859
GGGGAAAUGGAUUUAUACUGAGUAUCUGCAUAUUGCC	chr6:28876612-28876888(-)$1	276	163	200	12.5166
GUUUUACAGGUUUUUGAUUGGUCAAGGAGCACAUGUA	chr12:80238961-80239220(-)$1	259	11	48	11.9899
ACCAAGGUAAGACAUGUGCCUGUGUCUUCCUCGGAGG	chr22:21965252-21965514(+)$1	262	74	111	14.1327
GUUGGGGUGUGAAGGCUGUUUCCUGCCAUUCCAUGGC	chrX:64744622-64744896(-)$1	274	132	169	15.2255
AAAAGUUGUUUUGCCUCAUUUGGCAACAUUUUACUUA	chr5:43292955-43293176(-)$1	221	2	39	11.4436
AGGGUUAAGUGACUCUAAUAUGAGCUAUCUAUGACCA	chr15:93470467-93470703(+)$1	236	198	235	11.8000
GUGUGUGUGGAGCUUGUAAAGGAGUAUGCAUCUCAAG	chr4:128812140-128812399(+)$1	259	130	167	14.1797
agggaauggaggggCCUCCACGGCCUCUGUAUUCUGC	chr12:133251275-133251522(-)$1	247	119	156	11.9113
GGGACCCCUGAGAGAGUUCUUGGGUUAGGGGUUAGAG	chr7:143079207-143079460(+)$1	253	25	62	11.8105
UUGUGAUGAGGCAGUCACAUAGUCUCAUUAUAAUUGA	chr1:212240102-212240361(+)$1	259	172	209	15.3902
UGUUUUUCUUUUCAGACAGUACUGCAAGAUGAGAGGC	chr9:131720163-131720463(+)$1	300	110	147	15.9951
ACAUGGCCUGUUUUCUGUCGAGGAGAAUGAGGAAAAU	chr2:232576556-232576794(+)$1	238	18	55	12.8083
AUGGGUGUUAGAGAGUUCGGUCAAUUUAGCACCAAGU	chr1:65890927-65891243(+)$1	316	191	228	14.5861
CAGUUCCCAGCCCAGAGACAGCGGGGCGGGUGGCUCU	chrX:12994157-12994406(+)$1	249	137	174	12.9239
GAUUUUUGUAUUUUAUAUGACUGAAAGGCUAAAUAUC	chr7:23030538-23030803(-)$1	265	192	229	13.2365
GUUUUUUUUUUCUUUUUUGGCUCAGAAAAAAAAGAUU	chr3:195789725-195789961(-)$1	236	1	38	12.5044
UGAAGGAGAGAGGAGAACCUUAAACUCUUAACAUUUU	chr10:103573195-103573473(-)$1	278	178	215	12.7691
GAGGAGGAGGACGAGGAGGAAGACCUGGACUACUACU	chr5:180651146-180651430(+)$1	284	225	262	11.0177
AGGUAGCAAGUGUUGAAUGAAUAACUACUUUGUUACU	chr3:47210552-47210789(+)$1	237	3	40	15.0150
AUUGAAACUUGCCCAGAUGUUCUCAGAUAUGGUCUUA	chr3:195791070-195791296(-)$1	226	76	113	11.7242
guuauuuuguagacuguaccucaguuGAUAGAAUAAC	chr12:123665593-123665869(-)$1	276	33	70	15.1264
AGUUAAUGAGAAGAGCGUGUAUUCCACUCAUAAUUAU	chr3:9475403-9475658(+)$1	255	152	189	12.9748
AGCUGGGGGUAGAAGAGAAUGCUGGGGCAGGGGGCGG	chr16:2818316-2818575(+)$1	259	73	110	13.7405
UCCUUGUUCCGGCGGCUGAGUGACCAGCGGAGUAAGG	chr11:62655638-62655886(+)$1	248	194	231	15.3141
AAUCAUGGAUAUUAUUUAGUGACAUCCAUGAUUCACU	chr17:45696381-45696668(+)$1	287	177	214	13.0650
AGUCCAGCUUCCCUGACAUCCCAGGGGCUGUAAGUGC	chr11:62655497-62655742(+)$1	245	140	177	12.3936
cagaagcuaaacagggucgggccugguuaguacuugg	chr3:63531052-63531297(+)$1	245	99	136	12.7659
UACUUGUUCCAAAGGAAAAUCCUGGCAGAGGACAAGU	chr1:162487854-162488078(+)$1	224	91	128	13.9346
CGGGCGCUCGGCCACCGUGUGGUCGCUGGGCGUGCUU	chr22:50356191-50356454(+)$1	263	194	231	13.8115
auggUUGAAAAUAAUAUACAUAUGCUUAAUGUUGACC	chr7:53843823-53844054(+)$1	231	120	157	14.0894
AAAGUGUUUUCCCGUGAUGCUGGGGGGAAACACACAU	chr16:56968986-56969277(+)$1	291	30	67	16.2386
ugaauacgcucgauguugucucauuuuggaagcuaag	chr5:33277857-33278118(-)$1	261	82	119	13.8184
UCUAUUAUUUUCUCUUUUAGGCGAAGAUGAUGGUGAG	chr1:236395999-236396285(-)$1	286	126	163	11.6028
auccacaccggaacgugagucuguucugguggggaug	chr19:9533943-9534174(-)$1	231	155	192	16.1299
UAAAGCCUAAUGCAGCUUUGUCUGUAUUUGCUGACCA	chr16:23428298-23428563(-)$1	265	83	120	15.1665
AAGGAUGUUUUAAGCAUUAUUGUUGGAAGCAUUUUUA	chr7:158669199-158669482(+)$1	283	231	268	13.8009
UGUGUAUgugggugggugggugaaugggugggugugg	chr2:97560069-97560324(-)$1	255	71	108	12.0787
GAUAGAGCUUAGAACAAUGUCUUAGUUAUAAGCUCUU	chr4:83821021-83821278(-)$1	257	148	185	12.7754
AUGACUUGGAUUUCUAUCUGAAGCAACACAAGUUAAU	chr2:171863019-171863281(-)$1	262	160	197	13.9347
GAGGGAGAUCUUGAGGCCAUACCAAGUGCUACCUCUA	chr1:19499983-19500224(-)$1	241	51	88	11.8673
AGUGGCGGCUCCAGGAGGGACGUGGUGAGGCCGUCUA	chr6:43594027-43594270(-)$1	243	178	215	11.8026
AUUCCUUUUUCUUCAGAACUGUGGGGAGGAAGGGGAA	chr6:43742049-43742295(+)$1	246	142	179	19.3631
UGAUUAUCUCAAAGGGAGAUGCCAAUGGAGUAACAAU	chr17:25635509-25635765(+)$1	256	155	192	12.5145

#DB
(((.(((((..((.(......))).))))).)))(((	chrX:102470087-102470349(+)$1	1	17	54	12.9008
.((((((.(((.(((.....)))))).))))))....	chr2:97560413-97560671(-)$1	1	207	244	11.9543
((.((.(((.(((((......))))).))).)).)))	chr1:226252063-226252314(+)$1	1	81	118	13.5894
..(((((((...(((.....)))...)))))))))))	chr8:124381964-124382314(-)$1	1	246	283	13.9571
((((((((((..((((...))))....).))))))))	chr1:162487782-162488024(+)$1	1	163	200	13.9346
..(((((((.((((((.....)))))).)))))))..	chr22:38887991-38888229(-)$1	1	141	178	12.1964
(((((((....((((.....))))....)))))))..	chr3:167437922-167438187(-)$1	1	22	59	13.1406
.(((((.(((((((((((...))))))))))))))))	chr7:92204977-92205242(-)$1	1	221	258	13.6052
(.((((((..(((.(......).)))..)))))).))	chr1:145440710-145440934(+)$1	1	80	117	13.3986
(((((..((((((((......))))).))))))))..	chr6:135371558-135371811(-)$1	1	148	185	11.8859
((.((.(((.(..(((.....)))..).))).)).))	chr6:28876612-28876888(-)$1	1	163	200	12.5166
.((((((((.(((((((....))))))).)...))))	chr12:80238961-80239220(-)$1	1	11	48	11.9899
.((.(((.(((((((......)))))))))).))..)	chr22:21965252-21965514(+)$1	1	74	111	14.1327
(((((((((.(.(((......))).))))))))..))	chrX:64744622-64744896(-)$1	1	132	169	15.2255
(((((..((((((((......)))))...........	chr5:43292955-43293176(-)$1	1	2	39	11.4436
))(((((.(((.(((......))).)))...))))).	chr15:93470467-93470703(+)$1	1	198	235	11.8000
((((((.....((((......))))))))))))).((	chr4:128812140-128812399(+)$1	1	130	167	14.1797
..((((((.(((((((.....))))))).))))))..	chr12:133251275-133251522(-)$1	1	119	156	11.9113
..((((((((((((....)))...)))))))))))))	chr7:143079207-143079460(+)$1	1	25	62	11.8105
((((((((((((.........))))))))))))))..	chr1:212240102-212240361(+)$1	1	172	209	15.3902
(((((((((((((((......))).)))).)))))))	chr9:131720163-131720463(+)$1	1	110	147	15.9951
.(((..((((((((((.....))))))).)))...))	chr2:232576556-232576794(+)$1	1	18	55	12.8083
...(((((((((..(......)..)))))))))....	chr1:65890927-65891243(+)$1	1	191	228	14.5861
(....(((.((((.(......).)))))))..)).))	chrX:12994157-12994406(+)$1	1	137	174	12.9239
(((.(((((.(((((......))))).)).))).)))	chr7:23030538-23030803(-)$1	1	192	229	13.2365
(((((((((((((..........))))))))))))).	chr3:195789725-195789961(-)$1	1	1	38	12.5044
(((((((((((((((.........)))))....))))	chr10:103573195-103573473(-)$1	1	178	215	12.7691
.((....(((.(.........).)))...)).)))).	chr5:180651146-180651430(+)$1	1	225	262	11.0177
(((((((((((((((......)))).)).))))))))	chr3:47210552-47210789(+)$1	1	3	40	15.0150
.((((.(((..(..(((...)))..)....))).)))	chr3:195791070-195791296(-)$1	1	76	113	11.7242
((((((((((.(((((.....))))).))))))))))	chr12:123665593-123665869(-)$1	1	33	70	15.1264
(((((.((((..(((......)))..)))))))))..	chr3:9475403-9475658(+)$1	1	152	189	12.9748
.(((....((...((......))...))....))).)	chr16:2818316-2818575(+)$1	1	73	110	13.7405
(((((((((((..(((.....).))..))))))))))	chr11:62655638-62655886(+)$1	1	194	231	15.3141
((((((((((.((((...)))).)))))))))).(((	chr17:45696381-45696668(+)$1	1	177	214	13.0650
....((((..(((((......)))))))))...)).)	chr11:62655497-62655742(+)$1	1	140	177	12.3936
(((..((((..((((......))))..))))..))))	chr3:63531052-63531297(+)$1	1	99	136	12.7659
((((((((((..((((...))))....).))))))))	chr1:162487854-162488078(+)$1	1	91	128	13.9346
.(.(((((((((.(((....))).))))))))).)..	chr22:50356191-50356454(+)$1	1	194	231	13.8115
((((((((...((((((....))).)))...))))))	chr7:53843823-53844054(+)$1	1	120	157	14.0894
...((((((((((.(......).))))))))))....	chr16:56968986-56969277(+)$1	1	30	67	16.2386
((..((.((((((((......))))...).)))))..	chr5:33277857-33278118(-)$1	1	82	119	13.8184
.(((((((((((.((....)).))))))))))).(((	chr1:236395999-236396285(-)$1	1	126	163	11.6028
((((.((((((((((......)))))))))).)))).	chr19:9533943-9534174(-)$1	1	155	192	16.1299
...(((..(((((((......))))))).))))).))	chr16:23428298-23428563(-)$1	1	83	120	15.1665
(((((((((((.((((....)))).))))))))))).	chr7:158669199-158669482(+)$1	1	231	268	13.8009
(((.(((.(.(.(.(.........).).).)..))).	chr2:97560069-97560324(-)$1	1	71	108	12.0787
.((((((((((.(((.........))).))))))).)	chr4:83821021-83821278(-)$1	1	148	185	12.7754
.(((((((..((.((......)).))..))))))).)	chr2:171863019-171863281(-)$1	1	160	197	13.9347
((((.((..((((.(......)))))..)).))))..	chr1:19499983-19500224(-)$1	1	51	88	11.8673
...((((((((((.(.....).)))...)))))))))	chr6:43594027-43594270(-)$1	1	178	215	11.8026
.((((((((((((((......))))))))))))))..	chr6:43742049-43742295(+)$1	1	142	179	19.3631
(..((((.(((..((......))..))).))))..))	chr17:25635509-25635765(+)$1	1	155	192	12.5145

#PSSM
= : 0.16	[ : 0.13	! : 0.11	c : 0.09	i : 0.07	e : 0.07	g : 0.05	d : 0.05	" : 0.05	# : 0.03	$ : 0.03	B : 0.01	b : 0.01	f : 0.01	: : 0.01	+ : 0.01	
= : 0.20	c : 0.15	! : 0.07	i : 0.07	g : 0.07	e : 0.07	d : 0.07	" : 0.05	f : 0.03	b : 0.03	# : 0.03	[ : 0.01	B : 0.01	$ : 0.01	a : 0.01	+ : 0.01	
= : 0.20	g : 0.13	c : 0.11	i : 0.09	e : 0.09	f : 0.05	[ : 0.05	d : 0.05	b : 0.03	# : 0.03	" : 0.03	! : 0.03	$ : 0.01	+ : 0.01	
= : 0.22	g : 0.13	i : 0.13	e : 0.09	[ : 0.07	c : 0.07	d : 0.07	f : 0.05	b : 0.03	# : 0.03	! : 0.03	$ : 0.01	
= : 0.22	g : 0.15	i : 0.13	e : 0.11	c : 0.07	f : 0.05	b : 0.05	# : 0.05	d : 0.05	! : 0.03	[ : 0.03	
= : 0.24	g : 0.15	i : 0.13	c : 0.09	[ : 0.07	e : 0.05	f : 0.05	! : 0.05	d : 0.05	# : 0.03	b : 0.03	
= : 0.24	c : 0.15	g : 0.15	i : 0.11	d : 0.07	f : 0.05	! : 0.05	e : 0.03	[ : 0.03	# : 0.03	$ : 0.01	b : 0.01	
= : 0.26	c : 0.16	g : 0.13	i : 0.11	[ : 0.09	d : 0.05	# : 0.03	f : 0.03	! : 0.03	e : 0.01	$ : 0.01	b : 0.01	
= : 0.22	c : 0.20	g : 0.13	i : 0.11	! : 0.07	d : 0.05	a : 0.03	[ : 0.03	b : 0.03	e : 0.01	# : 0.01	$ : 0.01	" : 0.01	
= : 0.22	c : 0.13	[ : 0.13	! : 0.11	g : 0.11	d : 0.07	i : 0.05	" : 0.03	a : 0.03	b : 0.03	# : 0.01	$ : 0.01	
= : 0.16	! : 0.11	e : 0.11	g : 0.11	c : 0.09	a : 0.07	" : 0.05	i : 0.05	d : 0.05	[ : 0.05	b : 0.03	f : 0.01	# : 0.01	$ : 0.01	
d : 0.16	e : 0.13	= : 0.13	[ : 0.11	! : 0.11	g : 0.09	c : 0.07	b : 0.03	" : 0.03	i : 0.03	a : 0.03	f : 0.01	
c : 0.20	d : 0.20	e : 0.13	= : 0.09	! : 0.09	g : 0.09	[ : 0.05	r : 0.03	b : 0.01	f : 0.01	" : 0.01	a : 0.01	
c : 0.20	d : 0.16	[ : 0.13	e : 0.13	g : 0.09	b : 0.09	= : 0.05	r : 0.03	! : 0.03	f : 0.01	s : 0.01	
c : 0.20	d : 0.16	a : 0.15	e : 0.13	g : 0.09	b : 0.09	= : 0.05	r : 0.03	f : 0.01	m : 0.01	s : 0.01	
o : 0.49	r : 0.09	n : 0.07	c : 0.07	d : 0.05	g : 0.05	m : 0.03	f : 0.01	= : 0.01	s : 0.01	e : 0.01	a : 0.01	l : 0.01	
o : 0.49	n : 0.18	r : 0.09	m : 0.07	l : 0.05	c : 0.03	= : 0.01	g : 0.01	s : 0.01	
o : 0.49	n : 0.18	m : 0.11	r : 0.09	l : 0.07	= : 0.01	s : 0.01	
o : 0.49	n : 0.18	m : 0.09	r : 0.09	l : 0.07	c : 0.01	s : 0.01	d : 0.01	
o : 0.49	n : 0.18	r : 0.09	m : 0.07	d : 0.05	l : 0.03	c : 0.01	s : 0.01	b : 0.01	
o : 0.49	n : 0.11	c : 0.09	d : 0.09	r : 0.09	m : 0.03	l : 0.01	s : 0.01	b : 0.01	a : 0.01	
c : 0.18	d : 0.16	a : 0.15	e : 0.11	g : 0.09	= : 0.07	r : 0.05	b : 0.05	] : 0.03	f : 0.01	3 : 0.01	s : 0.01	
c : 0.20	d : 0.16	e : 0.11	] : 0.11	= : 0.09	g : 0.09	b : 0.07	r : 0.05	f : 0.01	3 : 0.01	2 : 0.01	s : 0.01	
c : 0.18	d : 0.15	= : 0.15	e : 0.11	g : 0.09	3 : 0.05	2 : 0.05	r : 0.05	b : 0.03	4 : 0.03	] : 0.03	f : 0.01	
= : 0.15	e : 0.13	] : 0.11	d : 0.11	c : 0.09	g : 0.09	2 : 0.07	4 : 0.05	i : 0.05	3 : 0.03	b : 0.03	f : 0.01	a : 0.01	
= : 0.16	e : 0.15	c : 0.13	g : 0.09	3 : 0.07	2 : 0.07	i : 0.07	4 : 0.05	d : 0.05	a : 0.03	] : 0.03	f : 0.01	b : 0.01	
= : 0.16	g : 0.13	] : 0.09	2 : 0.09	4 : 0.07	c : 0.07	i : 0.07	d : 0.07	3 : 0.05	e : 0.03	a : 0.03	b : 0.03	f : 0.01	> : 0.01	
= : 0.20	g : 0.13	c : 0.11	] : 0.07	i : 0.07	d : 0.07	2 : 0.05	b : 0.05	3 : 0.05	e : 0.03	a : 0.03	4 : 0.03	f : 0.01	> : 0.01	
= : 0.20	] : 0.15	g : 0.13	c : 0.09	i : 0.07	d : 0.07	3 : 0.05	e : 0.03	f : 0.03	b : 0.03	4 : 0.03	a : 0.03	> : 0.01	
= : 0.20	c : 0.13	g : 0.13	i : 0.13	] : 0.07	d : 0.07	f : 0.05	4 : 0.05	3 : 0.03	b : 0.03	e : 0.01	a : 0.01	> : 0.01	
= : 0.22	g : 0.13	i : 0.13	c : 0.13	3 : 0.07	] : 0.05	f : 0.05	e : 0.03	4 : 0.03	d : 0.03	> : 0.01	2 : 0.01	b : 0.01	a : 0.01	
= : 0.22	g : 0.13	i : 0.13	c : 0.11	] : 0.07	f : 0.05	e : 0.05	2 : 0.05	3 : 0.03	4 : 0.03	d : 0.03	b : 0.01	> : 0.01	
= : 0.20	g : 0.13	i : 0.13	c : 0.09	b : 0.09	e : 0.07	d : 0.07	f : 0.05	3 : 0.05	2 : 0.03	> : 0.01	4 : 0.01	
= : 0.16	g : 0.11	b : 0.11	c : 0.07	] : 0.07	d : 0.07	i : 0.07	e : 0.07	f : 0.05	2 : 0.03	5 : 0.03	: : 0.03	4 : 0.01	> : 0.01	3 : 0.01	
= : 0.16	g : 0.13	c : 0.11	d : 0.09	e : 0.07	] : 0.07	i : 0.05	2 : 0.05	f : 0.05	5 : 0.03	b : 0.03	4 : 0.01	> : 0.01	: : 0.01	3 : 0.01	a : 0.01	
c : 0.16	= : 0.13	d : 0.11	2 : 0.09	] : 0.07	i : 0.05	> : 0.05	e : 0.05	g : 0.05	3 : 0.05	f : 0.05	5 : 0.03	4 : 0.01	9 : 0.01	
c : 0.18	d : 0.09	2 : 0.09	= : 0.09	i : 0.05	> : 0.05	e : 0.05	g : 0.05	: : 0.05	3 : 0.05	f : 0.05	4 : 0.03	5 : 0.03	9 : 0.01	b : 0.01	] : 0.01	

#score	711.8550342412697
#seq	53
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF151HRC_NOLC1_UTR_m2_run1.txt

#BEAR
ccc[a"""eeeeeooooooeeeeea]cccccc]bb	chr1:226107526-226107829(-)$1	303	6	41	14.0487
=========####ccclllccc333==========	chr14:101201151-101201486(+)$1	335	160	195	16.7955
[eeeee[ffffffooooooffffff]eeeee]ggg	chr1:45976741-45976972(-)$1	231	112	147	11.5796
eeee####eeeeeooooooeeeee4444eeeee]e	chr19:5691846-5692120(-)$1	274	227	262	13.3452
==========!!cccmmmmccc333==========	chr20:32868292-32868504(-)$1	212	14	49	16.6136
fffff!!a"""ddddmmmmdddd333a]ffffff2	chr7:128498805-128499065(+)$1	260	46	81	11.5267
c[a[a[gggggggooooooggggggga]a]ccc]a	chr5:145562014-145562300(-)$1	286	33	68	14.5076
bb22cccffffffooooooffffff==========	chr10:73576679-73576941(-)$1	262	211	246	12.6139
ggggg"""bb[cccnnnnncccbb333gggggggC	chr19:13254974-13255239(-)$1	265	187	222	11.5922
cc[ccc"""ddddoooooodddd22ccc]ccc]hh	chr14:21678813-21679077(-)$1	264	70	105	15.5661
bb[ccc[ddddaooooooa]dddd]ccc]bbffff	chr17:57771904-57772128(+)$1	224	59	94	11.7872
!!ccc[gggggggooooooggggggg]ccc22hhh	chr17:37006343-37006567(-)$1	224	93	128	13.6250
ggggg[ddddrrrrrrrrrdddd333gggggggbb	chr2:38972061-38972337(-)$1	276	155	190	11.7597
b[ccc"""ccc!!ccclllccc333ccc22ccc]b	chrX:16862985-16863239(-)$1	254	58	93	13.8646
HHiiiiiiiii[aooooooa]iiiiiiiiieeeee	chr15:34818849-34819157(-)$1	308	78	113	14.0434
iiccc[dddd"""bboooooobb333dddd]ccc0	chr1:45976715-45976938(-)$1	223	145	180	11.7921
========[bb[ccclllccc]bb]==========	chr17:79477156-79477361(-)$1	205	157	192	14.3233
[ccc[bb[ddddaooooooa]dddd]bb]ccceee	chr1:156278756-156279025(-)$1	269	198	233	12.3933
=========[cccpppppppccc===========]	chr20:33432915-33433199(-)$1	284	75	110	11.9406
"=============nnnnn=============22e	chr1:174979110-174979362(+)$1	252	145	180	14.4727
ggggggg!!eeeeemmmmeeeee4444gggggggB	chr1:51820165-51820445(-)$1	280	114	149	11.1942
===========!!ccclllccc333==========	chrX:70520789-70521003(+)$1	214	45	80	17.1313
b####eeeee!!a[aooooooaa22eeeee333bb	chr11:73965491-73965786(+)$1	295	112	147	12.7718
iiiiii####eeeeellleeeee333iiiiiiiii	chr15:34671679-34671913(-)$1	234	24	59	14.5437
cbb"""gggggggcccmmmmccc22ggggggg333	chr16:89629586-89629817(+)$1	231	172	207	11.7376
===========!!ccclllccc333==========	chrX:70520806-70521072(+)$1	266	28	63	17.1313
c"""ggggggg!!cccmmmmccc22ggggggg444	chr2:172848254-172848553(+)$1	299	124	159	12.3898
iiiiccc"""cccooooooccc333ccc>>>>>>>	chr6:170844123-170844436(-)$1	313	178	213	15.0395
:============oooooo============ffff	chr7:26251831-26252119(+)$1	288	11	46	15.9983
[eeeee"""ddddoooooodddd4444eeeee]bb	chr17:74730240-74730502(-)$1	262	10	45	14.4444
d!!dddd[eeeeeooooooeeeee]dddddddd]e	chrX:69385867-69386169(+)$1	302	84	119	11.5286
=========!!bboooooobb]============:	chr7:56169249-56169503(-)$1	254	193	228	16.0132
[eeeee"""ddddoooooodddd]eeeeeeeeee:	chr2:86370989-86371290(-)$1	301	189	224	12.3107
iiiiiiiiiddddoooooodddd22iiiiiiiii3	chr16:15130133-15130383(+)$1	250	142	177	17.1506
$$$$ccc!!cccnnnnncccccc333=========	chr3:49397173-49397451(-)$1	278	213	248	12.5820
eeeeaccc[ddddooooooddddccc]a]eeeeec	chr19:47341333-47341635(-)$1	302	128	163	12.8573
c"""eeeee!!bboooooobb]eeeee4444ccc2	chr2:217070164-217070411(+)$1	247	140	175	12.2371
%%%ccc####cccooooooccc333ccc22hhhhh	chr19:10800089-10800383(+)$1	294	145	180	13.3969
gggg"""ccc!!ddddllldddd22ccc4444ggg	chr1:47681948-47682232(-)$1	284	225	260	13.5636
b[cccgggggggaooooooa]ggggggg]ccc]bb	chr17:40462632-40462891(+)$1	259	213	248	14.2966
[a####iiiiiiiiillliiiiiiiii4444a]bb	chr1:70904930-70905182(+)$1	252	107	142	12.9825
============cccmmmmccc22===========	chr22:41755095-41755358(+)$1	263	165	200	15.4809
###bb[ccc[cccooooooccc]cccbb4444bb]	chr8:100899617-100899831(-)$1	214	32	67	13.2457
=========####bbmmmmbb4444==========	chr15:91463433-91463736(+)$1	303	60	95	14.4442
===========!!bboooooobb22==========	chr19:10941966-10942240(+)$1	274	57	92	16.2526
ffffffgggggggooooooggggggg333ffffff	chr2:187373563-187373818(+)$1	255	114	149	12.8907
gggg[dddd!!ddddmmmmdddd22dddd]ggggg	chr7:158424018-158424430(-)$1	412	18	53	11.2115
ccc!!ccc[ddddmmmmddddccc]ccc22iiiii	chr6:44221233-44221465(+)$1	232	119	154	10.6248
ggggggg[eeeeeooooooeeeeegggggggccc[	chr9:127998651-127998879(-)$1	228	2	37	13.9101
hh[ccc"""ddddoooooodddd4444ccc4444h	chr2:85771403-85771670(+)$1	267	106	141	15.1250
#iiiiiiiii!!ddddllldddd22iiiiiiiii3	chr5:115249308-115249563(+)$1	255	67	102	14.9706

#otherMatches

#Seq PSSM
GCAGCUGAAGCCCGAGGCAGGGUUGGUGUGAUGCC	chr1:226107526-226107829(-)$1	303	6	41	14.0487
UGUUCGCUAUCUCUUGUGUCAAAUCUGGUGAACGC	chr14:101201151-101201486(+)$1	335	160	195	16.7955
AGGGGGUGGAGAGACCAGCCUUUCUUCCUUUGGUA	chr1:45976741-45976972(-)$1	231	112	147	11.5796
AUCAGAGUGUGGCAUAGAAGCUAUUUAAUGAUUAA	chr19:5691846-5692120(-)$1	274	227	262	13.3452
UCUGUGGACUUAUACCUGUGUGCUUGGUUUACAGG	chr20:32868292-32868504(-)$1	212	14	49	16.6136
GGGCUGGCGAGGGCUGCGAGGCCAGGGAAGCCCUG	chr7:128498805-128499065(+)$1	260	46	81	11.5267
GGUGGUCUGGGAACUACAAUUCCCGGCGGGCUGUG	chr5:145562014-145562300(-)$1	286	33	68	14.5076
CAAAGGCAGUUUUAUAUGAAAGAUUAGAAGCCUGG	chr10:73576679-73576941(-)$1	262	211	246	12.6139
GGACCCUGGGCUGGAACCACCACCACUGGUCCUGU	chr19:13254974-13255239(-)$1	265	187	222	11.5922
AAAGGCAAUCUCAUUUAGUUGAGUAGCUCUUGAAA	chr14:21678813-21679077(-)$1	264	70	105	15.5661
GUUUACUAACCCUUCCCUGAGGUUUGUGUAUGUUG	chr17:57771904-57772128(+)$1	224	59	94	11.7872
AAUGCAGGUUCUGCCAUUACAGGACCAGUAGCAAA	chr17:37006343-37006567(-)$1	224	93	128	13.6250
AUUCAACCAUCUAAUCAAAAUGGAUCUGGAUUACU	chr2:38972061-38972337(-)$1	276	155	190	11.7597
GAACUGGAGGGACAAGGAUCUUAAACCCAAAGUAC	chrX:16862985-16863239(-)$1	254	58	93	13.8646
UGGGCUCAUGAAGAUAUUGCAUCGUGAGCUGCAGC	chr15:34818849-34819157(-)$1	308	78	113	14.0434
ACUGGUUUGUAUGAUGUAUUAGUAGAGCAACCCAU	chr1:45976715-45976938(-)$1	223	145	180	11.7921
GGGCUGUUACUUGCUUUGAGUUGGAAGCGGUUUGC	chr17:79477156-79477361(-)$1	205	157	192	14.3233
CAUGUAAUUCUUCUCUAUUGUAAGGUUUCCAUUUA	chr1:156278756-156279025(-)$1	269	198	233	12.3933
GGGGUGGGGCGGGGUCUCUGCUCCCCCACUUUGCA	chr20:33432915-33433199(-)$1	284	75	110	11.9406
AUACUGAUGUUUCCAGUAAGGGAAUAUUGGUGAGC	chr1:174979110-174979362(+)$1	252	145	180	14.4727
AGAGUCGUUUGUGGUAUUUUAUGUUGUUGACUCUG	chr1:51820165-51820445(-)$1	280	114	149	11.1942
AGGGUUACUGUAUACUGAAGGUCUGACAGUAGCUC	chrX:70520789-70521003(+)$1	214	45	80	17.1313
GUCUUAGGUGAUGUGUAGCCCCCUCCACCUUUCCA	chr11:73965491-73965786(+)$1	295	112	147	12.7718
UGGGGAGUUUUCUAGUUACUAGACCAUCUCCAUUU	chr15:34671679-34671913(-)$1	234	24	59	14.5437
cuguaaucccagcacuuugagguuggcugggaguu	chr16:89629586-89629817(+)$1	231	172	207	11.7376
AGGGUUACUGUAUACUGAAGGUCUGACAGUAGCUC	chrX:70520806-70521072(+)$1	266	28	63	17.1313
UCUAUCUUUAGUUGAAUAUUUUCUUUUGGAGAGAU	chr2:172848254-172848553(+)$1	299	124	159	12.3898
UUGGAACUGUACCUUGGAUGGUUUUGUUUAUUAAA	chr6:170844123-170844436(-)$1	313	178	213	15.0395
CUUUuauauauauuuauauauauauauaAAAAUUG	chr7:26251831-26252119(+)$1	288	11	46	15.9983
UGCCUGACAACUGCACUUCCAGUCACCCGGGCCUU	chr17:74730240-74730502(-)$1	262	10	45	14.4444
CUUGCUUUGCAUUCAGUAAAGUGUCAAGUGAUUAA	chrX:69385867-69386169(+)$1	302	84	119	11.5286
UUUUAUUCUUUGUGAGUUAAUUAGAAUAAAGUCAU	chr7:56169249-56169503(-)$1	254	193	228	16.0132
AUUUUGCCCUCGGAGCAAACUGAAUAAAGCAACAA	chr2:86370989-86371290(-)$1	301	189	224	12.3107
AGGUAGGCUUUCUAGGAGGGGAGUCAGCUUGUCUA	chr16:15130133-15130383(+)$1	250	142	177	17.1506
UACUCCGUAACAGAUUUUGUUGGCAUAGCUCUGGG	chr3:49397173-49397451(-)$1	278	213	248	12.5820
UGUCCCGAGUAACCGUGCCGUUGUCGUGUGAUGCC	chr19:47341333-47341635(-)$1	302	128	163	12.8573
GCAUGGUUAUUGAUGAGUUUCUUAACCCUUUCCAG	chr2:217070164-217070411(+)$1	247	140	175	12.2371
UUUGAGUUUUUGCAGUUCAGUAUCCCUCUGUCUAU	chr19:10800089-10800383(+)$1	294	145	180	13.3969
GAGGAUGUAUCGGGAAGAUUUCUAAAUAAAAGUUU	chr1:47681948-47682232(-)$1	284	225	260	13.5636
CCCUGUGCAGUCCUGGGAUGUGGCUGCAGCAGCGG	chr17:40462632-40462891(+)$1	259	213	248	14.2966
UCUAUGUUUGCCUCUGAAGGAGGUGAGAUUUGUGC	chr1:70904930-70905182(+)$1	252	107	142	12.9825
GUGUAUAUAUGUCGCCCCCGUGAUGCAUAUAUACA	chr22:41755095-41755358(+)$1	263	165	200	15.4809
AAACUACGAUGUCAUGAAAGAUUUUGAGGAGAUGA	chr8:100899617-100899831(-)$1	214	32	67	13.2457
GACUCUGGGAGGACAGGGGUGGGGACCCAGAGUUA	chr15:91463433-91463736(+)$1	303	60	95	14.4442
AGCCUGGGGGGGACUCUACCAAGGUCUUCUUGGGC	chr19:10941966-10942240(+)$1	274	57	92	16.2526
UAUAAUGGUCAUUGCAGAAAAUGAUUGAUGUUGUA	chr2:187373563-187373818(+)$1	255	114	149	12.8907
CAGAUUUCUCUAUGAAUCAUCAUCAAGAACUCUGG	chr7:158424018-158424430(-)$1	412	18	53	11.2115
GGAAAACUUGUGCCCUUGUAUAGUGUCCCCAUGGG	chr6:44221233-44221465(+)$1	232	119	154	10.6248
GUUGUAGACACUGAUCUGCUAGUGCUGUAAUAUUG	chr9:127998651-127998879(-)$1	228	2	37	13.9101
UACCAUUAAACCAUCUCCCUGGUGCUUAUGCUCUU	chr2:85771403-85771670(+)$1	267	106	141	15.1250
UAAAGAAAUUGAGUAGUUCCUAUGUGAUUUUUUUU	chr5:115249308-115249563(+)$1	255	67	102	14.9706

#DB
(((.(...(((((......)))))).)))))).))	chr1:226107526-226107829(-)$1	1	6	41	14.0487
(((((((((....(((...)))...))))))))))	chr14:101201151-101201486(+)$1	1	160	195	16.7955
.(((((.((((((......)))))).))))).)))	chr1:45976741-45976972(-)$1	1	112	147	11.5796
((((....(((((......)))))....))))).)	chr19:5691846-5692120(-)$1	1	227	262	13.3452
((((((((((..(((....)))...))))))))))	chr20:32868292-32868504(-)$1	1	14	49	16.6136
(((((..(...((((....))))...).)))))).	chr7:128498805-128499065(+)$1	1	46	81	11.5267
(.(.(.(((((((......)))))))).).))).)	chr5:145562014-145562300(-)$1	1	33	68	14.5076
))..)))((((((......))))))((((((((((	chr10:73576679-73576941(-)$1	1	211	246	12.6139
(((((...((.(((.....)))))...))))))))	chr19:13254974-13255239(-)$1	1	187	222	11.5922
((.(((...((((......))))..))).))).))	chr14:21678813-21679077(-)$1	1	70	105	15.5661
((.(((.(((((......).)))).))).))))))	chr17:57771904-57772128(+)$1	1	59	94	11.7872
..(((.(((((((......))))))).)))..)))	chr17:37006343-37006567(-)$1	1	93	128	13.6250
(((((.((((.........))))...)))))))))	chr2:38972061-38972337(-)$1	1	155	190	11.7597
(.(((...(((..(((...)))...)))..))).)	chrX:16862985-16863239(-)$1	1	58	93	13.8646
(((((((((((.(......).)))))))))(((((	chr15:34818849-34819157(-)$1	1	78	113	14.0434
(((((.((((...((......))...)))).))).	chr1:45976715-45976938(-)$1	1	145	180	11.7921
((((((((.((.(((...))).)).))))))))))	chr17:79477156-79477361(-)$1	1	157	192	14.3233
.(((.((.(((((......).)))).)).))))))	chr1:156278756-156279025(-)$1	1	198	233	12.3933
(((((((((.(((.......)))))))))))))).	chr20:33432915-33433199(-)$1	1	75	110	11.9406
.(((((((((((((.....)))))))))))))..)	chr1:174979110-174979362(+)$1	1	145	180	14.4727
(((((((..(((((....)))))....))))))))	chr1:51820165-51820445(-)$1	1	114	149	11.1942
(((((((((((..(((...)))...))))))))))	chrX:70520789-70521003(+)$1	1	45	80	17.1313
(....(((((..(.(......))..)))))...))	chr11:73965491-73965786(+)$1	1	112	147	12.7718
((((((....(((((...)))))...)))))))))	chr15:34671679-34671913(-)$1	1	24	59	14.5437
)((...((((((((((....)))..)))))))...	chr16:89629586-89629817(+)$1	1	172	207	11.7376
(((((((((((..(((...)))...))))))))))	chrX:70520806-70521072(+)$1	1	28	63	17.1313
(...(((((((..(((....)))..)))))))...	chr2:172848254-172848553(+)$1	1	124	159	12.3898
(((((((...(((......)))...))).......	chr6:170844123-170844436(-)$1	1	178	213	15.0395
.((((((((((((......))))))))))))((((	chr7:26251831-26252119(+)$1	1	11	46	15.9983
.(((((...((((......))))....))))).))	chr17:74730240-74730502(-)$1	1	10	45	14.4444
(..((((.(((((......))))).)))))))).)	chrX:69385867-69386169(+)$1	1	84	119	11.5286
(((((((((..((......)).)))))))))))).	chr7:56169249-56169503(-)$1	1	193	228	16.0132
.(((((...((((......)))).)))))))))).	chr2:86370989-86371290(-)$1	1	189	224	12.3107
(((((((((((((......))))..))))))))).	chr16:15130133-15130383(+)$1	1	142	177	17.1506
....(((..(((.....))))))...)))))))))	chr3:49397173-49397451(-)$1	1	213	248	12.5820
((((((((.((((......))))))).).))))))	chr19:47341333-47341635(-)$1	1	128	163	12.8573
(...(((((..((......)).)))))....))).	chr2:217070164-217070411(+)$1	1	140	175	12.2371
...(((....(((......)))...)))..)))))	chr19:10800089-10800383(+)$1	1	145	180	13.3969
((((...(((..((((...))))..)))....)))	chr1:47681948-47682232(-)$1	1	225	260	13.5636
(.(((((((((((......).))))))).))).))	chr17:40462632-40462891(+)$1	1	213	248	14.2966
.(....(((((((((...)))))))))....).))	chr1:70904930-70905182(+)$1	1	107	142	12.9825
(((((((((((((((....)))..)))))))))))	chr22:41755095-41755358(+)$1	1	165	200	15.4809
...((.(((.(((......))).)))))....)).	chr8:100899617-100899831(-)$1	1	32	67	13.2457
(((((((((....((....))....))))))))))	chr15:91463433-91463736(+)$1	1	60	95	14.4442
(((((((((((..((......))..))))))))))	chr19:10941966-10942240(+)$1	1	57	92	16.2526
(((((((((((((......)))))))...))))))	chr2:187373563-187373818(+)$1	1	114	149	12.8907
((((.((((..((((....))))..)))).)))))	chr7:158424018-158424430(-)$1	1	18	53	11.2115
(((..(((.((((....))))))).)))..)))))	chr6:44221233-44221465(+)$1	1	119	154	10.6248
(((((((.(((((......))))))))))))(((.	chr9:127998651-127998879(-)$1	1	2	37	13.9101
((.(((...((((......))))....)))....)	chr2:85771403-85771670(+)$1	1	106	141	15.1250
.(((((((((..((((...))))..))))))))).	chr5:115249308-115249563(+)$1	1	67	102	14.9706

#PSSM
= : 0.19	c : 0.13	g : 0.11	[ : 0.09	b : 0.09	i : 0.07	e : 0.03	f : 0.03	# : 0.03	! : 0.01	H : 0.01	" : 0.01	: : 0.01	d : 0.01	$ : 0.01	% : 0.01	h : 0.01	
= : 0.23	g : 0.11	e : 0.09	i : 0.09	c : 0.07	[ : 0.05	b : 0.05	f : 0.03	! : 0.03	# : 0.03	" : 0.03	H : 0.01	$ : 0.01	% : 0.01	a : 0.01	h : 0.01	
= : 0.23	c : 0.13	g : 0.11	e : 0.09	i : 0.09	[ : 0.05	# : 0.05	f : 0.03	" : 0.03	a : 0.01	2 : 0.01	b : 0.01	! : 0.01	$ : 0.01	% : 0.01	
= : 0.23	c : 0.17	g : 0.11	e : 0.09	i : 0.09	" : 0.05	[ : 0.03	f : 0.03	# : 0.03	2 : 0.01	d : 0.01	$ : 0.01	b : 0.01	! : 0.01	
= : 0.23	c : 0.21	g : 0.09	e : 0.07	i : 0.07	a : 0.05	# : 0.05	f : 0.03	[ : 0.03	" : 0.03	d : 0.01	b : 0.01	! : 0.01	
= : 0.23	c : 0.17	" : 0.09	e : 0.09	[ : 0.09	i : 0.07	g : 0.07	# : 0.03	d : 0.03	! : 0.01	b : 0.01	f : 0.01	
= : 0.23	" : 0.15	g : 0.15	c : 0.11	d : 0.07	i : 0.07	# : 0.05	[ : 0.03	e : 0.03	! : 0.01	b : 0.01	
= : 0.23	" : 0.15	g : 0.11	d : 0.07	i : 0.07	c : 0.07	# : 0.05	[ : 0.05	f : 0.03	! : 0.03	e : 0.03	a : 0.01	
= : 0.21	e : 0.11	" : 0.11	g : 0.11	d : 0.09	i : 0.07	c : 0.05	[ : 0.05	f : 0.03	! : 0.03	# : 0.03	b : 0.01	
d : 0.21	= : 0.13	e : 0.11	g : 0.11	# : 0.07	c : 0.05	i : 0.05	! : 0.05	f : 0.03	" : 0.03	b : 0.03	[ : 0.03	
d : 0.17	! : 0.13	e : 0.11	g : 0.11	c : 0.11	= : 0.11	# : 0.03	f : 0.03	" : 0.03	i : 0.03	[ : 0.01	r : 0.01	b : 0.01	
d : 0.19	! : 0.17	e : 0.11	c : 0.11	g : 0.09	= : 0.05	# : 0.03	f : 0.03	[ : 0.03	b : 0.03	a : 0.01	r : 0.01	" : 0.01	i : 0.01	
d : 0.21	c : 0.15	e : 0.11	! : 0.09	g : 0.07	a : 0.07	# : 0.03	f : 0.03	= : 0.03	b : 0.03	o : 0.01	r : 0.01	" : 0.01	n : 0.01	i : 0.01	
o : 0.49	c : 0.19	d : 0.07	b : 0.05	e : 0.03	r : 0.01	p : 0.01	= : 0.01	[ : 0.01	n : 0.01	i : 0.01	m : 0.01	
o : 0.49	c : 0.17	d : 0.07	n : 0.05	b : 0.05	m : 0.03	r : 0.01	p : 0.01	a : 0.01	e : 0.01	i : 0.01	
o : 0.54	m : 0.13	c : 0.11	n : 0.05	l : 0.05	d : 0.03	r : 0.01	p : 0.01	
o : 0.54	l : 0.17	m : 0.17	n : 0.05	r : 0.01	p : 0.01	
o : 0.54	l : 0.17	m : 0.15	n : 0.03	r : 0.01	p : 0.01	c : 0.01	d : 0.01	
o : 0.52	m : 0.13	l : 0.11	n : 0.03	c : 0.03	e : 0.03	a : 0.01	r : 0.01	p : 0.01	i : 0.01	d : 0.01	
c : 0.23	d : 0.23	e : 0.11	g : 0.05	a : 0.05	o : 0.05	b : 0.05	f : 0.03	= : 0.03	m : 0.03	] : 0.01	p : 0.01	i : 0.01	
c : 0.29	d : 0.25	e : 0.11	g : 0.05	] : 0.05	o : 0.05	b : 0.05	f : 0.03	= : 0.03	i : 0.01	
c : 0.29	d : 0.25	e : 0.11	g : 0.07	] : 0.05	f : 0.03	i : 0.03	b : 0.03	= : 0.03	a : 0.01	4 : 0.01	
d : 0.25	e : 0.13	3 : 0.13	c : 0.09	g : 0.07	b : 0.07	= : 0.05	f : 0.03	i : 0.03	a : 0.01	2 : 0.01	] : 0.01	4 : 0.01	
3 : 0.23	2 : 0.19	e : 0.09	g : 0.07	= : 0.07	4 : 0.07	c : 0.05	f : 0.03	b : 0.03	d : 0.03	i : 0.03	] : 0.01	
3 : 0.25	2 : 0.17	4 : 0.09	g : 0.09	= : 0.09	] : 0.07	f : 0.03	i : 0.03	e : 0.03	c : 0.03	a : 0.01	d : 0.01	
= : 0.25	c : 0.17	g : 0.13	3 : 0.11	4 : 0.07	i : 0.07	] : 0.05	e : 0.05	d : 0.03	
= : 0.27	c : 0.15	g : 0.09	i : 0.09	e : 0.07	4 : 0.07	d : 0.05	a : 0.03	3 : 0.03	] : 0.03	b : 0.03	
= : 0.27	c : 0.19	g : 0.13	e : 0.07	i : 0.07	4 : 0.05	d : 0.05	] : 0.03	b : 0.03	a : 0.01	3 : 0.01	
= : 0.27	g : 0.11	e : 0.09	] : 0.09	i : 0.07	4 : 0.07	c : 0.05	2 : 0.05	d : 0.05	f : 0.01	a : 0.01	> : 0.01	3 : 0.01	
= : 0.27	c : 0.11	e : 0.11	g : 0.11	i : 0.07	4 : 0.07	2 : 0.05	f : 0.03	] : 0.03	d : 0.03	b : 0.01	> : 0.01	
= : 0.27	g : 0.13	c : 0.11	e : 0.11	4 : 0.09	i : 0.07	f : 0.03	b : 0.01	2 : 0.01	] : 0.01	3 : 0.01	> : 0.01	d : 0.01	h : 0.01	
= : 0.25	c : 0.17	g : 0.11	e : 0.09	f : 0.07	i : 0.07	4 : 0.05	] : 0.01	2 : 0.01	3 : 0.01	> : 0.01	d : 0.01	h : 0.01	a : 0.01	
= : 0.23	g : 0.11	] : 0.09	e : 0.09	c : 0.09	f : 0.07	i : 0.07	h : 0.03	3 : 0.03	4 : 0.03	2 : 0.01	> : 0.01	d : 0.01	b : 0.01	
= : 0.23	b : 0.13	g : 0.09	] : 0.07	f : 0.07	e : 0.07	i : 0.07	h : 0.05	c : 0.05	4 : 0.03	2 : 0.01	3 : 0.01	> : 0.01	
= : 0.19	b : 0.13	e : 0.09	h : 0.07	g : 0.05	f : 0.05	3 : 0.05	2 : 0.03	] : 0.03	i : 0.03	: : 0.03	a : 0.01	C : 0.01	0 : 0.01	B : 0.01	4 : 0.01	> : 0.01	c : 0.01	[ : 0.01	

#score	697.6508116391731
#seq	51
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF448SCQ_HNRNPK_CDS_m1_run2.txt

#BEAR
ee^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr12:122252170-122252554(+)$1	384	20	51	40.1587
fffff^^^^^^^^^^^^^^^^^^^^ffffff	chr6:30672916-30673191(-)$1	275	5	36	33.8775
ff^^^^^^^^^^^^^^^^^^^^^^^^^^fff	chr19:42410418-42410711(+)$1	293	156	187	40.1409
cc^^^^^^^^^^^^^^^^^^^^ccc22eeee	chr10:103900756-103901077(+)$1	321	233	264	34.0448
ddd^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr19:41255428-41255834(-)$1	406	270	301	38.2125
f[ccc^^^^^^^^^^^^^^^^^^^^cccfff	chr19:15353972-15354324(-)$1	352	187	218	34.6191
cbb!!dddd^^^^^^^^^^^^^^^^^^dddd	chr12:22778660-22779105(+)$1	445	49	80	30.3797
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^b	chr19:54969644-54969892(+)$1	248	73	104	40.5141
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr12:49434675-49434942(-)$1	267	115	146	41.2755
ff^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chrM:3445-3702(+)$1	257	163	194	40.0956
ffffff^^^^^^^^^^^^^^^^^^^ffffff	chr22:18301416-18301766(-)$1	350	229	260	32.3706
cc^^^^^^^^^^^^^^^^^^^^^^^^^^^cc	chrX:129147742-129148075(+)$1	333	99	130	40.0235
h^^^^^^^^^^^^^^^^^^^^^^^^^^^hhh	chr12:7046029-7046386(+)$1	357	147	178	39.5793
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr19:36278931-36279209(+)$1	278	71	102	41.2755
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr19:14203536-14203813(-)$1	277	74	105	41.0967
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chrM:6308-6536(+)$1	228	111	142	41.2380
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr12:58019401-58019708(-)$1	307	92	123	40.7046
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr1:155448243-155448594(-)$1	351	167	198	41.2380
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^b	chr19:54969692-54969979(+)$1	287	25	56	40.5141
ffffff^^^^^^^^^^^^^^^^^^^ffffff	chr17:7751294-7751577(+)$1	283	143	174	32.3706
[a^^^^^^^^^^^^^^^^^^^^^^^^^^a]=	chr6:31712829-31713148(+)$1	319	273	304	40.3082
cc[bb^^^^^^^^^^^^^^^^^^^^bb]ccc	chr6:30673426-30673671(-)$1	245	86	117	34.1070
dd:bb^^^^^^^^^^^^^^^^^^bbffffff	chr5:175957491-175957749(-)$1	258	60	91	30.5159
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chrX:53263724-53264071(-)$1	347	61	92	40.7046
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr12:7045552-7045813(+)$1	261	155	186	41.2755
d$$$$$bb^^^^^^^^^^^^^^^^^^^bb33	chr1:16262381-16262647(+)$1	266	68	99	33.3765
cc^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chr12:7045482-7045752(+)$1	270	168	199	40.1832
bb^^^^^^^^^^^^^^^^^^^^^^^^^bb22	chr1:171526794-171527081(+)$1	287	223	254	39.0469
eeee^^^^^^^^^^^^^^^^^^^eeeee>>>	chr17:30469880-30470166(+)$1	286	174	205	31.5766
eeee^^^^^^^^^^^^^^^^^^^eeeeefff	chr1:150525996-150526287(+)$1	291	129	160	32.4697
^^^^^^^^^^^^^^^^^^^^^^^^^^^^ccc	chrM:10837-11055(+)$1	218	41	72	41.0967
fffff^^^^^^^^^^^^^^^^^^^^^^ffff	chr12:56558062-56558497(-)$1	435	224	255	36.3722
b!!ccc^^^^^^^^^^^^^^^^^^^^^ccc2	chrM:13646-13936(+)$1	290	80	111	35.4758
gggggg^^^^^^^^^^^^^^^^^^ggggggg	chr16:2811575-2811834(+)$1	259	153	184	30.7356
^^^^^^^^^^^^^^^^^^^^^^^^^^^dddd	chr17:8046757-8047024(-)$1	267	215	246	40.7046
bb^^^^^^^^^^^^^^^^^^^^^bb22dddd	chr12:7045874-7046115(+)$1	241	123	154	34.4424
cc^^^^^^^^^^^^^^^^^^^^^^^^^ccc>	chr12:57110499-57110747(-)$1	248	120	151	39.8944
bb^^^^^^^^^^^^^^^^^^^^^^^bb333e	chr12:57112493-57112719(-)$1	226	140	171	37.4346
!bb"""bb^^^^^^^^^^^^^^^^^^^bb]b	chr19:50435809-50436134(+)$1	325	44	75	32.8883
^^^^^^^^^^^^^^^^^^^^^^^^^^^bbgg	chr3:47452099-47452366(+)$1	267	169	200	40.7680
eee^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr12:57919821-57920129(+)$1	308	108	139	39.0242
bb^^^^^^^^^^^^^^^^^^^^^^^^^bb]f	chr14:105173837-105174141(+)$1	304	20	51	39.6457
cc^^^^^^^^^^^^^^^^^^^^^ccc22eee	chr11:117152615-117153022(+)$1	407	241	272	35.2320
ee^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr3:169846705-169846970(-)$1	265	95	126	40.1587
^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr9:134073120-134073461(+)$1	341	152	183	41.0785
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr19:36278799-36279065(+)$1	266	203	234	41.2755
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr16:67576462-67576786(+)$1	324	99	130	41.2380
^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr1:153923948-153924220(-)$1	272	79	110	41.0785
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chrM:6336-6556(+)$1	220	83	114	41.2380
cc^^^^^^^^^^^^^^^^^^ccc4444bb]e	chr19:2248378-2248638(+)$1	260	145	176	32.9304
ee^^^^^^^^^^^^^^^^^^^^^^^^^^eee	chr12:49434164-49434463(-)$1	299	210	241	40.1741
^^^^^^^^^^^^^^^^^^^^^^^^^^^====	chr17:80039589-80039862(-)$1	273	56	87	41.0676
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chrM:6356-6585(+)$1	229	63	94	41.2380
^^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr17:7417152-7417485(+)$1	333	21	52	41.2380
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr17:56051773-56052164(-)$1	391	212	243	41.2755
^^^^^^^^^^^^^^^^^^^^^^^^^^^eeee	chr11:65660317-65660590(-)$1	273	88	119	41.2755
eeeee^^^^^^^^^^^^^^^^^^^^^eeeee	chr19:36279558-36279798(+)$1	240	126	157	35.3247
dd!!eeeee^^^^^^^^^^^^^^^^^^eeee	chr11:64533216-64533538(-)$1	322	142	173	30.9683
bb^^^^^^^^^^^^^^^^^^^^bb]bb]ddd	chr17:40947174-40947473(+)$1	299	156	187	32.8106

#otherMatches

#Seq PSSM
gccccccccaccaccaccacccccaccgcag	chr12:122252170-122252554(+)$1	384	20	51	40.1587
GCCUGUCACUUCUGAGCCCACAUAUCAGGCU	chr6:30672916-30673191(-)$1	275	5	36	33.8775
UCUCCUGACUCCACCCCUCCUUGCCCCUGGC	chr19:42410418-42410711(+)$1	293	156	187	40.1409
GUACUACCUGAUCCGUUUACUCACUAUGCCC	chr10:103900756-103901077(+)$1	321	233	264	34.0448
CAGACCCCUGUUCCCCCACCGCUCCCACUGC	chr19:41255428-41255834(-)$1	406	270	301	38.2125
GAUGAAGAGCCACCUGCCCCACCCCUCACCU	chr19:15353972-15354324(-)$1	352	187	218	34.6191
UCUUUGAGAUUGACCUGAGGCACAUUUUCUC	chr12:22778660-22779105(+)$1	445	49	80	30.3797
CCCUUCUGCCUUUGCUCUUCCCAUCCUUCCG	chr19:54969644-54969892(+)$1	248	73	104	40.5141
CCCAUUCCUCAAACCCCGCUGCCCCUCGCUG	chr12:49434675-49434942(-)$1	267	115	146	41.2755
GCCUCCUAUUUAUUCUAGCCACCUCUAGCCU	chrM:3445-3702(+)$1	257	163	194	40.0956
CUGUCCAAAGCCAAAGUGACACCAAGGACAG	chr22:18301416-18301766(-)$1	350	229	260	32.3706
gcccaccuucuacccccacccucauccccgc	chrX:129147742-129148075(+)$1	333	99	130	40.0235
UACCCAUGUUCACACCCCUCCCCUUCCCAGG	chr12:7046029-7046386(+)$1	357	147	178	39.5793
CCUCACCUGCCUCUUCCUCCUCCUCUUCCCC	chr19:36278931-36279209(+)$1	278	71	102	41.2755
Gcugcucccccucauccccuucacccuccug	chr19:14203536-14203813(-)$1	277	74	105	41.0967
ACCCCCUGCCAUAACCCAAUACCAAACGCCC	chrM:6308-6536(+)$1	228	111	142	41.2380
UCAUUCCGUCCCCACCCUUUUCUUCUUGAUC	chr12:58019401-58019708(-)$1	307	92	123	40.7046
CCUCCAUCUCCUUCUUUCACCACGCCACUUC	chr1:155448243-155448594(-)$1	351	167	198	41.2380
CCCUUCUGCCUUUGCUCUUCCCAUCCUUCCG	chr19:54969692-54969979(+)$1	287	25	56	40.5141
CUUCCUCCUGCCACCAAAAUACCUCAGGAAG	chr17:7751294-7751577(+)$1	283	143	174	32.3706
GUGCCCCAUCCCUCAUCUCACAUUACAAAGA	chr6:31712829-31713148(+)$1	319	273	304	40.3082
UGAGCCCCACCCUUCCACCUCCACAGCCCAG	chr6:30673426-30673671(-)$1	245	86	117	34.1070
GCAGCUUCACCUACUCCACCUCUGCGCCUGG	chr5:175957491-175957749(-)$1	258	60	91	30.5159
GCAGCCCUCUCUUCCCCCACCUCCCCAGCAG	chrX:53263724-53264071(-)$1	347	61	92	40.7046
GUAUACUCAGCCUUCUCUCCCAUCCCAGGCU	chr12:7045552-7045813(+)$1	261	155	186	41.2755
GCCAAAGCUgcccccacccccaccccugccc	chr1:16262381-16262647(+)$1	266	68	99	33.3765
CUACCCCCACUCUUUCCCUCCCCCAACAAGC	chr12:7045482-7045752(+)$1	270	168	199	40.1832
gccccaaauccugccccaccugccccagccc	chr1:171526794-171527081(+)$1	287	223	254	39.0469
GAAGCUUCUCUCCUCCUUUUCCUCUUCGAAC	chr17:30469880-30470166(+)$1	286	174	205	31.5766
CUGUCCACACCCCAUCCCCCCAAGCAGAACC	chr1:150525996-150526287(+)$1	291	129	160	32.4697
UAUUUUUUAACCAAAUCAACAACAACCUAUU	chrM:10837-11055(+)$1	218	41	72	41.0967
GGCACUCUCCCCCCACCUAACCUGCCUGUGU	chr12:56558062-56558497(-)$1	435	224	255	36.3722
GCAGGAUUUCUCAUUACUAACAACAUUUCCC	chrM:13646-13936(+)$1	290	80	111	35.4758
UCGGGACCGUUCACCACCUAAGUCUCCCGAG	chr16:2811575-2811834(+)$1	259	153	184	30.7356
UGCCUCGCACUCCCCUUCUCCAUCCUUGCCC	chr17:8046757-8047024(-)$1	267	215	246	40.7046
GCUCCCACCACGCACACCCUUACGCCAUGUC	chr12:7045874-7046115(+)$1	241	123	154	34.4424
GCAAUUCCAACCCCCAAAGAAGCCCCAGCUA	chr12:57110499-57110747(-)$1	248	120	151	39.8944
CCAUGACUUCUUCCUCCCCCAAAAAGGCCCG	chr12:57112493-57112719(-)$1	226	140	171	37.4346
UGCCCCGCCCCUCccaccacccuccccgccg	chr19:50435809-50436134(+)$1	325	44	75	32.8883
CACAAUCCCCCUACCCCUAUGCCCCUCAGCC	chr3:47452099-47452366(+)$1	267	169	200	40.7680
UCCUGUCCCCCAACCCUUUUCUCUCCCGGAG	chr12:57919821-57920129(+)$1	308	108	139	39.0242
GUCCAccccacccccacccccacccccaccc	chr14:105173837-105174141(+)$1	304	20	51	39.6457
CCGCCUCCAUCCCACCUCCCCCAGGCUUGGG	chr11:117152615-117153022(+)$1	407	241	272	35.2320
UGAAUCUUCCAUCCCAUCUUCCACUUCCAGC	chr3:169846705-169846970(-)$1	265	95	126	40.1587
UCCAACAUCAUUCCCCACAUUGUCAUUUGGU	chr9:134073120-134073461(+)$1	341	152	183	41.0785
CCUCACCUGCCUCUUCCUCCUCCUCUUCCCC	chr19:36278799-36279065(+)$1	266	203	234	41.2755
ACCCCCACAAGUCCCACCCACAAAACCAGUA	chr16:67576462-67576786(+)$1	324	99	130	41.2380
ACUUCAUUCACCUCUCAGCCACCCAUCCCUG	chr1:153923948-153924220(-)$1	272	79	110	41.0785
ACCCCCUGCCAUAACCCAAUACCAAACGCCC	chrM:6336-6556(+)$1	220	83	114	41.2380
UCCCCCUCCCCCAACCAACUGAGAAGCUGCU	chr19:2248378-2248638(+)$1	260	145	176	32.9304
GCUUUUUGCCCAUCACCCGUUACCCCUCGCU	chr12:49434164-49434463(-)$1	299	210	241	40.1741
gcagcccugcccaccccacccucucccagug	chr17:80039589-80039862(-)$1	273	56	87	41.0676
ACCCCCUGCCAUAACCCAAUACCAAACGCCC	chrM:6356-6585(+)$1	229	63	94	41.2380
GUCCCAAAUAUUCACCCACCUCUCCCAAGUA	chr17:7417152-7417485(+)$1	333	21	52	41.2380
CAUCUCCAAUGAAUCUACCCACACCUAUGAC	chr17:56051773-56052164(-)$1	391	212	243	41.2755
CCUCCCUAACUCCUUUCACCCCCAGCCUGGU	chr11:65660317-65660590(-)$1	273	88	119	41.2755
ACCAUCUGACAACAUUAAUGAAUAAAAUGGU	chr19:36279558-36279798(+)$1	240	126	157	35.3247
CUCCCAUGGACCCUUCUAACUUUGUCACCAU	chr11:64533216-64533538(-)$1	322	142	173	30.9683
CCUUCCCCCUCCCGUUGCUCCUGGUGGCCAG	chr17:40947174-40947473(+)$1	299	156	187	32.8106

#DB
((.........................))))	chr12:122252170-122252554(+)$1	1	20	51	40.1587
(((((....................))))))	chr6:30672916-30673191(-)$1	1	5	36	33.8775
((..........................)))	chr19:42410418-42410711(+)$1	1	156	187	40.1409
((....................)))..))))	chr10:103900756-103901077(+)$1	1	233	264	34.0448
(((........................))))	chr19:41255428-41255834(-)$1	1	270	301	38.2125
(.(((....................))))))	chr19:15353972-15354324(-)$1	1	187	218	34.6191
(((..((((..................))))	chr12:22778660-22779105(+)$1	1	49	80	30.3797
..............................)	chr19:54969644-54969892(+)$1	1	73	104	40.5141
...........................))))	chr12:49434675-49434942(-)$1	1	115	146	41.2755
((.........................))))	chrM:3445-3702(+)$1	1	163	194	40.0956
((((((...................))))))	chr22:18301416-18301766(-)$1	1	229	260	32.3706
((...........................))	chrX:129147742-129148075(+)$1	1	99	130	40.0235
(...........................)))	chr12:7046029-7046386(+)$1	1	147	178	39.5793
...........................))))	chr19:36278931-36279209(+)$1	1	71	102	41.2755
............................)))	chr19:14203536-14203813(-)$1	1	74	105	41.0967
...........................))))	chrM:6308-6536(+)$1	1	111	142	41.2380
...........................))))	chr12:58019401-58019708(-)$1	1	92	123	40.7046
...........................))))	chr1:155448243-155448594(-)$1	1	167	198	41.2380
..............................)	chr19:54969692-54969979(+)$1	1	25	56	40.5141
((((((...................))))))	chr17:7751294-7751577(+)$1	1	143	174	32.3706
.(..........................).)	chr6:31712829-31713148(+)$1	1	273	304	40.3082
((.((....................)).)))	chr6:30673426-30673671(-)$1	1	86	117	34.1070
)).((..................))((((((	chr5:175957491-175957749(-)$1	1	60	91	30.5159
...........................))))	chrX:53263724-53264071(-)$1	1	61	92	40.7046
...........................))))	chr12:7045552-7045813(+)$1	1	155	186	41.2755
(.....((...................))..	chr1:16262381-16262647(+)$1	1	68	99	33.3765
((..........................)))	chr12:7045482-7045752(+)$1	1	168	199	40.1832
((.........................))..	chr1:171526794-171527081(+)$1	1	223	254	39.0469
((((...................)))))...	chr17:30469880-30470166(+)$1	1	174	205	31.5766
((((...................)))))(((	chr1:150525996-150526287(+)$1	1	129	160	32.4697
............................)))	chrM:10837-11055(+)$1	1	41	72	41.0967
(((((......................))))	chr12:56558062-56558497(-)$1	1	224	255	36.3722
(..(((.....................))).	chrM:13646-13936(+)$1	1	80	111	35.4758
((((((..................)))))))	chr16:2811575-2811834(+)$1	1	153	184	30.7356
...........................))))	chr17:8046757-8047024(-)$1	1	215	246	40.7046
((.....................))..))))	chr12:7045874-7046115(+)$1	1	123	154	34.4424
((.........................))).	chr12:57110499-57110747(-)$1	1	120	151	39.8944
((.......................))...)	chr12:57112493-57112719(-)$1	1	140	171	37.4346
.((...((...................)).)	chr19:50435809-50436134(+)$1	1	44	75	32.8883
...........................))))	chr3:47452099-47452366(+)$1	1	169	200	40.7680
(((........................))))	chr12:57919821-57920129(+)$1	1	108	139	39.0242
((.........................)).)	chr14:105173837-105174141(+)$1	1	20	51	39.6457
((.....................)))..)))	chr11:117152615-117153022(+)$1	1	241	272	35.2320
((.........................))))	chr3:169846705-169846970(-)$1	1	95	126	40.1587
...........................))))	chr9:134073120-134073461(+)$1	1	152	183	41.0785
...........................))))	chr19:36278799-36279065(+)$1	1	203	234	41.2755
...........................))))	chr16:67576462-67576786(+)$1	1	99	130	41.2380
...........................))))	chr1:153923948-153924220(-)$1	1	79	110	41.0785
...........................))))	chrM:6336-6556(+)$1	1	83	114	41.2380
((..................)))....)).)	chr19:2248378-2248638(+)$1	1	145	176	32.9304
((..........................)))	chr12:49434164-49434463(-)$1	1	210	241	40.1741
...........................))))	chr17:80039589-80039862(-)$1	1	56	87	41.0676
...........................))))	chrM:6356-6585(+)$1	1	63	94	41.2380
...........................))))	chr17:7417152-7417485(+)$1	1	21	52	41.2380
...........................))))	chr17:56051773-56052164(-)$1	1	212	243	41.2755
...........................))))	chr11:65660317-65660590(-)$1	1	88	119	41.2755
(((((.....................)))))	chr19:36279558-36279798(+)$1	1	126	157	35.3247
((..(((((..................))))	chr11:64533216-64533538(-)$1	1	142	173	30.9683
((....................)).)).)))	chr17:40947174-40947473(+)$1	1	156	187	32.8106

#PSSM
^ : 0.38	c : 0.13	e : 0.11	f : 0.11	b : 0.10	d : 0.06	h : 0.01	[ : 0.01	g : 0.01	! : 0.01	
^ : 0.40	e : 0.11	c : 0.11	b : 0.11	f : 0.10	d : 0.05	[ : 0.01	a : 0.01	$ : 0.01	! : 0.01	g : 0.01	
^ : 0.69	f : 0.06	e : 0.06	b : 0.03	! : 0.03	d : 0.01	c : 0.01	[ : 0.01	: : 0.01	$ : 0.01	g : 0.01	
^ : 0.72	f : 0.06	e : 0.05	c : 0.03	! : 0.03	b : 0.03	$ : 0.01	g : 0.01	" : 0.01	
^ : 0.76	f : 0.06	c : 0.03	b : 0.03	e : 0.03	! : 0.01	$ : 0.01	g : 0.01	" : 0.01	
^ : 0.86	f : 0.03	d : 0.01	$ : 0.01	c : 0.01	g : 0.01	" : 0.01	e : 0.01	
^ : 0.93	b : 0.03	d : 0.01	e : 0.01	
^ : 0.93	b : 0.03	d : 0.01	e : 0.01	
^ : 0.96	d : 0.01	e : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.98	c : 0.01	
^ : 0.98	c : 0.01	
^ : 0.94	c : 0.03	b : 0.01	
^ : 0.86	b : 0.05	c : 0.03	e : 0.03	4 : 0.01	
^ : 0.84	c : 0.03	b : 0.03	e : 0.03	g : 0.01	4 : 0.01	] : 0.01	
^ : 0.74	f : 0.06	b : 0.05	2 : 0.03	c : 0.03	e : 0.03	g : 0.01	4 : 0.01	
^ : 0.72	f : 0.06	2 : 0.05	b : 0.05	e : 0.05	c : 0.01	g : 0.01	4 : 0.01	
e : 0.23	f : 0.20	^ : 0.16	d : 0.10	b : 0.10	c : 0.05	g : 0.05	] : 0.03	3 : 0.01	2 : 0.01	= : 0.01	
f : 0.25	e : 0.23	d : 0.11	c : 0.10	b : 0.10	^ : 0.05	g : 0.05	h : 0.01	a : 0.01	> : 0.01	3 : 0.01	= : 0.01	
f : 0.25	e : 0.23	d : 0.11	c : 0.11	] : 0.06	g : 0.06	^ : 0.03	3 : 0.03	h : 0.01	2 : 0.01	> : 0.01	= : 0.01	
e : 0.27	f : 0.27	d : 0.11	c : 0.08	g : 0.06	b : 0.05	= : 0.03	2 : 0.03	> : 0.03	h : 0.01	3 : 0.01	

#score	2235.3805377643225
#seq	59
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF075TIW_YBX3_transcript_m2_run1.txt

#BEAR
eeeeooooooeeeee	chr3:194831663-194832056(-)$1	393	317	332	11.3087
ddddoooooodddd]	chr21:44085151-44085424(+)$1	273	239	254	12.2350
ddddooooooddddf	chr22:35737456-35737716(+)$1	260	136	151	11.9063
eeeeooooooeeeee	chr15:77348306-77348559(-)$1	253	133	148	11.3087
ddddoooooodddd4	chr11:47647125-47647392(-)$1	267	205	220	12.1737
eeeeooooooeeeee	chr19:39926160-39926379(-)$1	219	193	208	11.3087
cc[aooooooa]ccc	chr2:47130986-47131286(-)$1	300	38	53	9.9074
ddddoooooodddd]	chr11:2154784-2154987(-)$1	203	138	153	12.2350
ddddoooooodddd:	chr5:81572115-81572361(-)$1	246	147	162	11.3653
eeeeooooooeeeee	chr1:8920994-8921204(-)$1	210	29	44	11.3087
ddddoooooodddd3	chr17:1559661-1559904(-)$1	243	86	101	12.2694
ddddooooooddddf	chr11:2160082-2160286(-)$1	204	130	145	11.9063
eeeeooooooeeeee	chr9:34369182-34369488(-)$1	306	223	238	11.3087
ddddooooooddddc	chr11:2152120-2152322(-)$1	202	131	146	11.9543
eeeeooooooeeeee	chr1:44069606-44069826(+)$1	220	178	193	11.3087
gg[aooooooa]ggg	chr3:31641769-31642045(+)$1	276	205	220	9.8323
ddddoooooodddd]	chr16:90001034-90001292(+)$1	258	114	129	12.2350
eeeeooooooeeeee	chr20:32873146-32873359(-)$1	213	105	120	11.3087
ddddoooooodddd]	chr19:58905948-58906150(+)$1	202	85	100	12.2350
ddddoooooodddd2	chr4:77977301-77977504(-)$1	203	127	142	12.0766
eeeeooooooeeeee	chr7:107600089-107600301(-)$1	212	91	106	11.3087
ecccooooooccc22	chr11:2153552-2153755(-)$1	203	140	155	10.5451
ecccooooooccc22	chr11:2153456-2153663(-)$1	207	48	63	10.5451
ddddooooooddddc	chr11:65194682-65194912(+)$1	230	162	177	11.9543
ddddoooooodddd:	chr3:197680811-197681024(+)$1	213	20	35	11.3653
ddddooooooddddF	chr2:44175168-44175423(-)$1	255	84	99	11.6932
"cccooooooccc44	chr11:2159573-2159776(-)$1	203	180	195	10.5285
dcccooooooccc33	chr5:149825130-149825345(-)$1	215	47	62	10.9581
iiiiooooooiiiii	chr15:99478454-99478687(+)$1	233	197	212	9.9253
[cccooooooccc22	chr8:17427226-17427456(+)$1	230	100	115	10.3669
ddddoooooodddd:	chr7:98985587-98985872(+)$1	285	31	46	11.3653
eeeeooooooeeeee	chr11:63881520-63881833(-)$1	313	242	257	11.3087
ddddoooooodddd:	chr14:69349074-69349280(-)$1	206	133	148	11.3653
[cccooooooccc]e	chr1:55316207-55316442(-)$1	235	26	41	10.4781
ddddoooooodddd6	chr22:35741253-35741489(+)$1	236	96	111	11.7633
#cccooooooccc44	chr11:2153657-2153872(-)$1	215	143	158	10.4891
eeeeooooooeeeee	chr6:75947569-75947805(-)$1	236	43	58	11.3087
ee[aooooooa]eee	chr17:36884285-36884557(+)$1	272	254	269	10.5581
ddddoooooodddd]	chr11:2154657-2154861(-)$1	204	12	27	12.2350
eeeeooooooeeeee	chr22:47555063-47555315(+)$1	252	120	135	11.3087
eeeeooooooeeeee	chr11:2151517-2151744(-)$1	227	178	193	11.3087
"cccoooooocccdd	chr8:38776103-38776456(+)$1	353	254	269	10.4380
ggggooooooggggg	chr22:42070795-42071068(-)$1	273	164	179	9.9972
ecccooooooccc33	chr11:61732065-61732295(-)$1	230	190	205	10.9088
eeeeooooooeeeee	chr9:108097747-108098044(+)$1	297	47	62	11.3087
ddddooooooddddF	chr20:62325258-62325552(+)$1	294	259	274	11.6932
ddddoooooodddd]	chr11:2154746-2154952(-)$1	206	103	118	12.2350
[cccooooooccca2	chr3:197680844-197681054(+)$1	210	33	48	10.4701
ddddoooooodddd5	chr17:95428-95755(-)$1	327	254	269	11.5050
eeeeooooooeeeee	chr6:128298038-128298299(-)$1	261	107	122	11.3087
ddddooooooddddf	chr11:70482177-70482495(-)$1	318	106	121	11.9063
ggggooooooggggg	chr9:131339428-131339652(+)$1	224	170	185	9.9972
ggggooooooggggg	chr5:180663939-180664142(-)$1	203	168	183	9.9972
[cccooooooccc33	chr12:56486720-56486947(+)$1	227	53	68	10.7306
ddddoooooodddd]	chr15:99901497-99901811(+)$1	314	112	127	12.2350
eeeeooooooeeeee	chr11:64973906-64974226(+)$1	320	159	174	11.3087
eeeeooooooeeeee	chr11:2152578-2152782(-)$1	204	68	83	11.3087
ddddoooooodddd:	chr22:31740324-31740592(-)$1	268	129	144	11.3653
eeeeooooooeeeee	chr13:48832222-48832456(+)$1	234	27	42	11.3087
ddddoooooodddd:	chr17:18112612-18112882(+)$1	270	64	79	11.3653
ggggooooooggggg	chr11:61732161-61732378(-)$1	217	41	56	9.9972
ddddooooooddddC	chr11:65195334-65195552(+)$1	218	197	212	11.0448
ddddoooooodddd]	chr17:33951416-33951706(+)$1	290	185	200	12.2350
ddddoooooodddd:	chr19:16213193-16213477(+)$1	284	191	206	11.3653

#otherMatches

#Seq PSSM
aagcaaaccgguuug	chr3:194831663-194832056(-)$1	393	317	332	11.3087
agagauaaaccucug	chr21:44085151-44085424(+)$1	273	239	254	12.2350
CCACCACCCAGUGGG	chr22:35737456-35737716(+)$1	260	136	151	11.9063
AGUCGCUGUGGACUU	chr15:77348306-77348559(-)$1	253	133	148	11.3087
CUGUAUGCUGACAGG	chr11:47647125-47647392(-)$1	267	205	220	12.1737
AGCUCUUGAAAGCUG	chr19:39926160-39926379(-)$1	219	193	208	11.3087
gcaggcuuaacagca	chr2:47130986-47131286(-)$1	300	38	53	9.9074
GGAGUGCUGUUUCCG	chr11:2154784-2154987(-)$1	203	138	153	12.2350
GAGUAUUUCAACUCU	chr5:81572115-81572361(-)$1	246	147	162	11.3653
ACUUUCCACCAAGUG	chr1:8920994-8921204(-)$1	210	29	44	11.3087
GGAGCUCCAACUCCC	chr17:1559661-1559904(-)$1	243	86	101	12.2694
UCGGCCCAAACCGAG	chr11:2160082-2160286(-)$1	204	130	145	11.9063
UGGUAGCAAAACCAG	chr9:34369182-34369488(-)$1	306	223	238	11.3087
GAGUAGCCUGACUCC	chr11:2152120-2152322(-)$1	202	131	146	11.9543
GUCCGCGCAUGGACC	chr1:44069606-44069826(+)$1	220	178	193	11.3087
CUGUCAACUAAGAGA	chr3:31641769-31642045(+)$1	276	205	220	9.8323
CCGGCAACAACUGGG	chr16:90001034-90001292(+)$1	258	114	129	12.2350
CCCAAGAAGGUGGGU	chr20:32873146-32873359(-)$1	213	105	120	11.3087
UGUGUCUCCUUGCAG	chr19:58905948-58906150(+)$1	202	85	100	12.2350
UUUCUUCCGUGAAAA	chr4:77977301-77977504(-)$1	203	127	142	12.0766
GGCCCAACGUGGUUG	chr7:107600089-107600301(-)$1	212	91	106	11.3087
GGCACGUCGCUGCUA	chr11:2153552-2153755(-)$1	203	140	155	10.5451
GGCACGUCGCUGCUA	chr11:2153456-2153663(-)$1	207	48	63	10.5451
CUGGGACUAGCCAGG	chr11:65194682-65194912(+)$1	230	162	177	11.9543
UAUAUCAGCUUGUAU	chr3:197680811-197681024(+)$1	213	20	35	11.3653
GAAUGUAAAAAUUCC	chr2:44175168-44175423(-)$1	255	84	99	11.6932
CUGCCCCGUCGCACA	chr11:2159573-2159776(-)$1	203	180	195	10.5285
UCCAUUGACUUGGCC	chr5:149825130-149825345(-)$1	215	47	62	10.9581
GGAGGUCAGUUUUCA	chr15:99478454-99478687(+)$1	233	197	212	9.9253
AGCUUUCCCUAGCCA	chr8:17427226-17427456(+)$1	230	100	115	10.3669
CUGAGUGUCAUCAGC	chr7:98985587-98985872(+)$1	285	31	46	11.3653
gcauccauccaugca	chr11:63881520-63881833(-)$1	313	242	257	11.3087
GGGGCUCCCACCCCU	chr14:69349074-69349280(-)$1	206	133	148	11.3653
GAAAGCCUCAUUUGU	chr1:55316207-55316442(-)$1	235	26	41	10.4781
UCAGAUGCUCCUGAG	chr22:35741253-35741489(+)$1	236	96	111	11.7633
UUGGCACUCCCCACC	chr11:2153657-2153872(-)$1	215	143	158	10.4891
UUUAUACACUUAGAU	chr6:75947569-75947805(-)$1	236	43	58	11.3087
AUGGCUGUAACGAUC	chr17:36884285-36884557(+)$1	272	254	269	10.5581
GGAGUGCUGUUUCCG	chr11:2154657-2154861(-)$1	204	12	27	12.2350
auguauacucacauu	chr22:47555063-47555315(+)$1	252	120	135	11.3087
GUGGAGAAGGCCACU	chr11:2151517-2151744(-)$1	227	178	193	11.3087
AUCUUAGCUUGGAGA	chr8:38776103-38776456(+)$1	353	254	269	10.4380
CUUCCCCCCUGAGGU	chr22:42070795-42071068(-)$1	273	164	179	9.9972
UUGUACCAAAACAUC	chr11:61732065-61732295(-)$1	230	190	205	10.9088
ACAAUGUGUUUUGUG	chr9:108097747-108098044(+)$1	297	47	62	11.3087
UGGCCUGCCCGCCAC	chr20:62325258-62325552(+)$1	294	259	274	11.6932
GGAGUGCUGUUUCCG	chr11:2154746-2154952(-)$1	206	103	118	12.2350
ACAGUCACUCCUGGC	chr3:197680844-197681054(+)$1	210	33	48	10.4701
UGGUCCCUCUGCCAC	chr17:95428-95755(-)$1	327	254	269	11.5050
GGCAACCAGCUGCUU	chr6:128298038-128298299(-)$1	261	107	122	11.3087
auguacacacacaug	chr11:70482177-70482495(-)$1	318	106	121	11.9063
AGGAGAAUAGUUCUG	chr9:131339428-131339652(+)$1	224	170	185	9.9972
GUUUAUGGCAGAGCU	chr5:180663939-180664142(-)$1	203	168	183	9.9972
CCUGAACAUCCAGUC	chr12:56486720-56486947(+)$1	227	53	68	10.7306
CCUCCCAGCUGAGGU	chr15:99901497-99901811(+)$1	314	112	127	12.2350
GUGGUGCCCUCCACC	chr11:64973906-64974226(+)$1	320	159	174	11.3087
cagcacacacguugc	chr11:2152578-2152782(-)$1	204	68	83	11.3087
UCCCACUCUGGGGAG	chr22:31740324-31740592(-)$1	268	129	144	11.3653
UUUUCUUCCCAGAAA	chr13:48832222-48832456(+)$1	234	27	42	11.3087
GGCCAGCUUGGGCCU	chr17:18112612-18112882(+)$1	270	64	79	11.3653
CCUGAAUGAGCAGGU	chr11:61732161-61732378(-)$1	217	41	56	9.9972
GAUCAGGUGAGAUCG	chr11:65195334-65195552(+)$1	218	197	212	11.0448
CAGAGGUCAGUCUGU	chr17:33951416-33951706(+)$1	290	185	200	12.2350
UGAGGAUUUACUUAU	chr19:16213193-16213477(+)$1	284	191	206	11.3653

#DB
((((......)))))	chr3:194831663-194832056(-)$1	1	317	332	11.3087
((((......)))).	chr21:44085151-44085424(+)$1	1	239	254	12.2350
((((......))))(	chr22:35737456-35737716(+)$1	1	136	151	11.9063
((((......)))))	chr15:77348306-77348559(-)$1	1	133	148	11.3087
((((......)))).	chr11:47647125-47647392(-)$1	1	205	220	12.1737
((((......)))))	chr19:39926160-39926379(-)$1	1	193	208	11.3087
((.(......).)))	chr2:47130986-47131286(-)$1	1	38	53	9.9074
((((......)))).	chr11:2154784-2154987(-)$1	1	138	153	12.2350
((((......)))).	chr5:81572115-81572361(-)$1	1	147	162	11.3653
((((......)))))	chr1:8920994-8921204(-)$1	1	29	44	11.3087
((((......)))).	chr17:1559661-1559904(-)$1	1	86	101	12.2694
((((......))))(	chr11:2160082-2160286(-)$1	1	130	145	11.9063
((((......)))))	chr9:34369182-34369488(-)$1	1	223	238	11.3087
((((......))))(	chr11:2152120-2152322(-)$1	1	131	146	11.9543
((((......)))))	chr1:44069606-44069826(+)$1	1	178	193	11.3087
((.(......).)))	chr3:31641769-31642045(+)$1	1	205	220	9.8323
((((......)))).	chr16:90001034-90001292(+)$1	1	114	129	12.2350
((((......)))))	chr20:32873146-32873359(-)$1	1	105	120	11.3087
((((......)))).	chr19:58905948-58906150(+)$1	1	85	100	12.2350
((((......)))).	chr4:77977301-77977504(-)$1	1	127	142	12.0766
((((......)))))	chr7:107600089-107600301(-)$1	1	91	106	11.3087
((((......)))..	chr11:2153552-2153755(-)$1	1	140	155	10.5451
((((......)))..	chr11:2153456-2153663(-)$1	1	48	63	10.5451
((((......))))(	chr11:65194682-65194912(+)$1	1	162	177	11.9543
((((......)))).	chr3:197680811-197681024(+)$1	1	20	35	11.3653
((((......)))))	chr2:44175168-44175423(-)$1	1	84	99	11.6932
.(((......)))..	chr11:2159573-2159776(-)$1	1	180	195	10.5285
((((......)))..	chr5:149825130-149825345(-)$1	1	47	62	10.9581
((((......)))))	chr15:99478454-99478687(+)$1	1	197	212	9.9253
.(((......)))..	chr8:17427226-17427456(+)$1	1	100	115	10.3669
((((......)))).	chr7:98985587-98985872(+)$1	1	31	46	11.3653
((((......)))))	chr11:63881520-63881833(-)$1	1	242	257	11.3087
((((......)))).	chr14:69349074-69349280(-)$1	1	133	148	11.3653
.(((......))).)	chr1:55316207-55316442(-)$1	1	26	41	10.4781
((((......)))).	chr22:35741253-35741489(+)$1	1	96	111	11.7633
.(((......)))..	chr11:2153657-2153872(-)$1	1	143	158	10.4891
((((......)))))	chr6:75947569-75947805(-)$1	1	43	58	11.3087
((.(......).)))	chr17:36884285-36884557(+)$1	1	254	269	10.5581
((((......)))).	chr11:2154657-2154861(-)$1	1	12	27	12.2350
((((......)))))	chr22:47555063-47555315(+)$1	1	120	135	11.3087
((((......)))))	chr11:2151517-2151744(-)$1	1	178	193	11.3087
.(((......)))))	chr8:38776103-38776456(+)$1	1	254	269	10.4380
((((......)))))	chr22:42070795-42071068(-)$1	1	164	179	9.9972
((((......)))..	chr11:61732065-61732295(-)$1	1	190	205	10.9088
((((......)))))	chr9:108097747-108098044(+)$1	1	47	62	11.3087
((((......)))))	chr20:62325258-62325552(+)$1	1	259	274	11.6932
((((......)))).	chr11:2154746-2154952(-)$1	1	103	118	12.2350
.(((......)))).	chr3:197680844-197681054(+)$1	1	33	48	10.4701
((((......)))).	chr17:95428-95755(-)$1	1	254	269	11.5050
((((......)))))	chr6:128298038-128298299(-)$1	1	107	122	11.3087
((((......))))(	chr11:70482177-70482495(-)$1	1	106	121	11.9063
((((......)))))	chr9:131339428-131339652(+)$1	1	170	185	9.9972
((((......)))))	chr5:180663939-180664142(-)$1	1	168	183	9.9972
.(((......)))..	chr12:56486720-56486947(+)$1	1	53	68	10.7306
((((......)))).	chr15:99901497-99901811(+)$1	1	112	127	12.2350
((((......)))))	chr11:64973906-64974226(+)$1	1	159	174	11.3087
((((......)))))	chr11:2152578-2152782(-)$1	1	68	83	11.3087
((((......)))).	chr22:31740324-31740592(-)$1	1	129	144	11.3653
((((......)))))	chr13:48832222-48832456(+)$1	1	27	42	11.3087
((((......)))).	chr17:18112612-18112882(+)$1	1	64	79	11.3653
((((......)))))	chr11:61732161-61732378(-)$1	1	41	56	9.9972
((((......)))))	chr11:65195334-65195552(+)$1	1	197	212	11.0448
((((......)))).	chr17:33951416-33951706(+)$1	1	185	200	12.2350
((((......)))).	chr19:16213193-16213477(+)$1	1	191	206	11.3653

#PSSM
d : 0.45	e : 0.32	g : 0.07	[ : 0.06	" : 0.03	c : 0.01	i : 0.01	# : 0.01	
d : 0.43	e : 0.28	c : 0.18	g : 0.07	i : 0.01	
d : 0.43	e : 0.26	c : 0.17	g : 0.06	[ : 0.04	i : 0.01	
d : 0.43	e : 0.26	c : 0.17	g : 0.06	a : 0.04	i : 0.01	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
o : 1.00	
d : 0.43	e : 0.26	c : 0.17	g : 0.06	a : 0.04	i : 0.01	
d : 0.43	e : 0.26	c : 0.17	g : 0.06	] : 0.04	i : 0.01	
d : 0.43	e : 0.28	c : 0.18	g : 0.07	i : 0.01	
d : 0.45	e : 0.28	g : 0.07	2 : 0.04	3 : 0.04	4 : 0.03	c : 0.01	i : 0.01	] : 0.01	a : 0.01	
e : 0.29	] : 0.12	: : 0.10	g : 0.07	2 : 0.07	3 : 0.06	f : 0.04	4 : 0.04	c : 0.04	F : 0.03	i : 0.01	6 : 0.01	d : 0.01	5 : 0.01	C : 0.01	

#score	720.204561480178
#seq	64
#width	15
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF456CGG_SLBP_CDS_m1_run2.txt

#BEAR
'''ffffffmmmmffffff	chr6:27776257-27776474(+)$1	217	164	183	13.7449
:::ffffffmmmmffffff	chr6:27858058-27858280(-)$1	222	164	183	15.4423
:::ffffffmmmmffffff	chr6:26188889-26189109(-)$1	220	148	167	15.4423
:::ffffffmmmmffffff	chr6:26055952-26056192(-)$1	240	202	221	15.4423
:::ffffffmmmmffffff	chr6:26196976-26197224(-)$1	248	189	208	15.4423
:::ffffffmmmmffffff	chr6:26285310-26285531(-)$1	221	154	173	15.4423
+++ffffffmmmmffffff	chr6:26124687-26124937(+)$1	250	206	225	14.9897
&&&ffffffmmmmffffff	chr1:228645004-228645246(-)$1	242	158	177	13.8890
cc:ffffffmmmmffffff	chr1:149857670-149857939(-)$1	269	183	202	13.8151
:::ffffffmmmmffffff	chr6:26124737-26124950(+)$1	213	156	175	15.4423
:::ffffffmmmmffffff	chr6:26031785-26032007(-)$1	222	164	183	15.4423
:::ffffffmmmmffffff	chr6:27805558-27805834(-)$1	276	153	172	15.4423
:::ffffffooooooffff	chr6:27107014-27107257(+)$1	243	25	44	11.0969
:::ffffffmmmmffffff	chr6:26055927-26056132(-)$1	205	142	161	15.4423
:::ffffffmmmmffffff	chr6:26205025-26205291(+)$1	266	200	219	15.4423
:::ffffffmmmmffffff	chr6:27806700-27806930(+)$1	230	164	183	15.4423
:::ffffffmmmmffffff	chr6:26157167-26157441(+)$1	274	152	171	15.4423
:::ffffffmmmmffffff	chr6:26055917-26056127(-)$1	210	137	156	15.4423
:::ffffffmmmmffffff	chr1:149784741-149784985(-)$1	244	184	203	15.4423
:::ffffffmmmmffffff	chr6:26055932-26056152(-)$1	220	162	181	15.4423
:::ffffffmmmmffffff	chr6:26216395-26216649(-)$1	254	185	204	15.4423
:::ffffffmmmmffffff	chr6:26234369-26234611(-)$1	242	148	167	15.4423
:::ffffffmmmmffffff	chr6:26250269-26250527(-)$1	258	136	155	15.4423
:::ffffffmmmmffffff	chr6:26252152-26252401(+)$1	249	127	146	15.4423
:::ffffffmmmmffffff	chr6:26158665-26158934(+)$1	269	146	165	15.4423
:::ffffffmmmmffffff	chr6:26104348-26104600(+)$1	252	193	212	15.4423
:::ffffffmmmmffffff	chr6:26123600-26123855(-)$1	255	137	156	15.4423
C::ffffffmmmmffffff	chr6:27776204-27776455(+)$1	251	217	236	15.0975
GGGffffffmmmmffffff	chr6:27115139-27115405(+)$1	266	182	201	14.2467
:::ffffffmmmmffffff	chr6:27776274-27776518(+)$1	244	147	166	15.4423
:::ffffffmmmmffffff	chr6:27107261-27107520(+)$1	259	168	187	15.4423
%%%ffffffmmmmffffff	chr1:149813687-149813993(-)$1	306	185	204	13.9682
$$$ffffffmmmmffffff	chr6:26217459-26217694(+)$1	235	182	201	13.7589
:::ffffffmmmmffffff	chr1:228646099-228646358(+)$1	259	136	155	15.4423
:::ffffffmmmmffffff	chr6:26250327-26250600(-)$1	273	209	228	15.4423
+++ffffffmmmmffffff	chr6:26198977-26199246(-)$1	269	211	230	14.9897
:::ffffffmmmmffffff	chr6:27860421-27860671(-)$1	250	171	190	15.4423
:::ffffffmmmmffffff	chr6:27834471-27834760(-)$1	289	167	186	15.4423
:::ffffffmmmmffffff	chr6:27798852-27799106(-)$1	254	132	151	15.4423
:::ffffffmmmmffffff	chr6:27792098-27792318(+)$1	220	135	154	15.4423
:::ffffffmmmmffffff	chr6:27806670-27806886(+)$1	216	194	213	15.4423
:::ffffffmmmmffffff	chr6:27100038-27100299(-)$1	261	181	200	15.4423

#otherMatches

#Seq PSSM
AAAGGCUCUUUUCAGAGCC	chr6:27776257-27776474(+)$1	217	164	183	13.7449
AAAGGCUCUUUUCAGAGCC	chr6:27858058-27858280(-)$1	222	164	183	15.4423
AACGGCCCUUUUCAGGGCC	chr6:26188889-26189109(-)$1	220	148	167	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:26055952-26056192(-)$1	240	202	221	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:26196976-26197224(-)$1	248	189	208	15.4423
AAAGGCCCUUUUCAGGGCC	chr6:26285310-26285531(-)$1	221	154	173	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:26124687-26124937(+)$1	250	206	225	14.9897
AAAGGCUCUUUUCAGAGCC	chr1:228645004-228645246(-)$1	242	158	177	13.8890
AAAGGCUCUUUUCAGAGCC	chr1:149857670-149857939(-)$1	269	183	202	13.8151
AAAGGCUCUUUUCAGAGCC	chr6:26124737-26124950(+)$1	213	156	175	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:26031785-26032007(-)$1	222	164	183	15.4423
AAAGGUUCUUUUCAGAGCC	chr6:27805558-27805834(-)$1	276	153	172	15.4423
AAAGCUGCCAUCACAGGCA	chr6:27107014-27107257(+)$1	243	25	44	11.0969
AAAGGCUCUUUUCAGAGCC	chr6:26055927-26056132(-)$1	205	142	161	15.4423
AAAGGCCCUUUUCAGGGCC	chr6:26205025-26205291(+)$1	266	200	219	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:27806700-27806930(+)$1	230	164	183	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:26157167-26157441(+)$1	274	152	171	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:26055917-26056127(-)$1	210	137	156	15.4423
AAAGGCUCUUUUCAGAGCC	chr1:149784741-149784985(-)$1	244	184	203	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:26055932-26056152(-)$1	220	162	181	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:26216395-26216649(-)$1	254	185	204	15.4423
AACGGCUCUUUUCAGAGCC	chr6:26234369-26234611(-)$1	242	148	167	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:26250269-26250527(-)$1	258	136	155	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:26252152-26252401(+)$1	249	127	146	15.4423
AAAGGCUCUUUUAAGAGCC	chr6:26158665-26158934(+)$1	269	146	165	15.4423
AAAGGCCCUUUUCAGGGCC	chr6:26104348-26104600(+)$1	252	193	212	15.4423
AAAGGCUCUUUUAAGAGCC	chr6:26123600-26123855(-)$1	255	137	156	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:27776204-27776455(+)$1	251	217	236	15.0975
AAAGGCUCUUUUCAGAGCC	chr6:27115139-27115405(+)$1	266	182	201	14.2467
AAAGGCUCUUUUCAGAGCC	chr6:27776274-27776518(+)$1	244	147	166	15.4423
AAAGGCCCUUUUUAGGGCC	chr6:27107261-27107520(+)$1	259	168	187	15.4423
AAAGGCUCUUUUCAGAGCC	chr1:149813687-149813993(-)$1	306	185	204	13.9682
AAAGGCUCUUUUCAGAGCC	chr6:26217459-26217694(+)$1	235	182	201	13.7589
AAAGGCUCUUUUCAGAGCC	chr1:228646099-228646358(+)$1	259	136	155	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:26250327-26250600(-)$1	273	209	228	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:26198977-26199246(-)$1	269	211	230	14.9897
AAAGGCUCUUUUCAGAGCC	chr6:27860421-27860671(-)$1	250	171	190	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:27834471-27834760(-)$1	289	167	186	15.4423
AAAGGCCCUUUUUAGGGCC	chr6:27798852-27799106(-)$1	254	132	151	15.4423
AAAGGCCCUUUUCAGGGCC	chr6:27792098-27792318(+)$1	220	135	154	15.4423
AAAGGCUCUUUUCAGAGCC	chr6:27806670-27806886(+)$1	216	194	213	15.4423
AACGGCUCUUUUAAGAGCC	chr6:27100038-27100299(-)$1	261	181	200	15.4423

#DB
...((((((....))))))	chr6:27776257-27776474(+)$1	1	164	183	13.7449
...((((((....))))))	chr6:27858058-27858280(-)$1	1	164	183	15.4423
...((((((....))))))	chr6:26188889-26189109(-)$1	1	148	167	15.4423
...((((((....))))))	chr6:26055952-26056192(-)$1	1	202	221	15.4423
...((((((....))))))	chr6:26196976-26197224(-)$1	1	189	208	15.4423
...((((((....))))))	chr6:26285310-26285531(-)$1	1	154	173	15.4423
...((((((....))))))	chr6:26124687-26124937(+)$1	1	206	225	14.9897
...((((((....))))))	chr1:228645004-228645246(-)$1	1	158	177	13.8890
)).((((((....))))))	chr1:149857670-149857939(-)$1	1	183	202	13.8151
...((((((....))))))	chr6:26124737-26124950(+)$1	1	156	175	15.4423
...((((((....))))))	chr6:26031785-26032007(-)$1	1	164	183	15.4423
...((((((....))))))	chr6:27805558-27805834(-)$1	1	153	172	15.4423
...((((((......))))	chr6:27107014-27107257(+)$1	1	25	44	11.0969
...((((((....))))))	chr6:26055927-26056132(-)$1	1	142	161	15.4423
...((((((....))))))	chr6:26205025-26205291(+)$1	1	200	219	15.4423
...((((((....))))))	chr6:27806700-27806930(+)$1	1	164	183	15.4423
...((((((....))))))	chr6:26157167-26157441(+)$1	1	152	171	15.4423
...((((((....))))))	chr6:26055917-26056127(-)$1	1	137	156	15.4423
...((((((....))))))	chr1:149784741-149784985(-)$1	1	184	203	15.4423
...((((((....))))))	chr6:26055932-26056152(-)$1	1	162	181	15.4423
...((((((....))))))	chr6:26216395-26216649(-)$1	1	185	204	15.4423
...((((((....))))))	chr6:26234369-26234611(-)$1	1	148	167	15.4423
...((((((....))))))	chr6:26250269-26250527(-)$1	1	136	155	15.4423
...((((((....))))))	chr6:26252152-26252401(+)$1	1	127	146	15.4423
...((((((....))))))	chr6:26158665-26158934(+)$1	1	146	165	15.4423
...((((((....))))))	chr6:26104348-26104600(+)$1	1	193	212	15.4423
...((((((....))))))	chr6:26123600-26123855(-)$1	1	137	156	15.4423
)..((((((....))))))	chr6:27776204-27776455(+)$1	1	217	236	15.0975
(((((((((....))))))	chr6:27115139-27115405(+)$1	1	182	201	14.2467
...((((((....))))))	chr6:27776274-27776518(+)$1	1	147	166	15.4423
...((((((....))))))	chr6:27107261-27107520(+)$1	1	168	187	15.4423
...((((((....))))))	chr1:149813687-149813993(-)$1	1	185	204	13.9682
...((((((....))))))	chr6:26217459-26217694(+)$1	1	182	201	13.7589
...((((((....))))))	chr1:228646099-228646358(+)$1	1	136	155	15.4423
...((((((....))))))	chr6:26250327-26250600(-)$1	1	209	228	15.4423
...((((((....))))))	chr6:26198977-26199246(-)$1	1	211	230	14.9897
...((((((....))))))	chr6:27860421-27860671(-)$1	1	171	190	15.4423
...((((((....))))))	chr6:27834471-27834760(-)$1	1	167	186	15.4423
...((((((....))))))	chr6:27798852-27799106(-)$1	1	132	151	15.4423
...((((((....))))))	chr6:27792098-27792318(+)$1	1	135	154	15.4423
...((((((....))))))	chr6:27806670-27806886(+)$1	1	194	213	15.4423
...((((((....))))))	chr6:27100038-27100299(-)$1	1	181	200	15.4423

#PSSM
: : 0.78	+ : 0.04	' : 0.02	& : 0.02	c : 0.02	C : 0.02	G : 0.02	% : 0.02	$ : 0.02	
: : 0.80	+ : 0.04	' : 0.02	& : 0.02	c : 0.02	G : 0.02	% : 0.02	$ : 0.02	
: : 0.83	+ : 0.04	' : 0.02	& : 0.02	G : 0.02	% : 0.02	$ : 0.02	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	
m : 0.97	o : 0.02	
m : 0.97	o : 0.02	
m : 0.97	o : 0.02	
m : 0.97	o : 0.02	
f : 0.97	o : 0.02	
f : 0.97	o : 0.02	
f : 1.00	
f : 1.00	
f : 1.00	
f : 1.00	

#score	633.7529161666095
#seq	42
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_CDS_m2_run2.txt

#BEAR
::eeeee!!aqqqqqqqqa22eeee	chr16:546658-546950(+)$1	292	129	154	9.2845
d"""eeeeebboooooobb]eeeee	chr5:179047917-179048173(-)$1	256	135	160	8.8259
gggggg!!ddddoooooodddd]gg	chr3:42662766-42663028(+)$1	262	120	145	8.9282
[ccc!!ddddqqqqqqqqdddd22c	chr12:132198465-132198728(+)$1	263	18	43	12.3818
iiiii!!a[cccoooooocccaiii	chr16:89976840-89977113(+)$1	273	231	256	9.0621
gggccc[cccqqqqqqqqccc]ccc	chr5:135382388-135382640(+)$1	252	197	222	11.4975
c####eeeeesssssssssseeeee	chr20:42087683-42087927(+)$1	244	133	158	10.0648
dd"""ffffffooooooffffff33	chr3:172025002-172025263(+)$1	261	46	71	7.9217
$$$bb[ddddrrrrrrrrrdddd]b	chr20:39796336-39796594(+)$1	258	213	238	9.5296
b[ccc[ddddqqqqqqqqddddccc	chr17:74308988-74309253(-)$1	265	217	242	12.0228
ggggggg[bbaooooooa]bbgggg	chr20:57569542-57569798(+)$1	256	12	37	8.1001
dddd!!ddddqqqqqqqqdddd22d	chr6:43495813-43496097(-)$1	284	34	59	11.4598
##ffffff[aqqqqqqqqa]fffff	chr5:179048271-179048511(-)$1	240	183	208	10.9317
cc"""eeeeeqqqqqqqqeeeeecc	chr1:19431020-19431308(-)$1	288	222	247	12.3143
cc[cccwwwwwwwwwwwwwwccc]c	chr9:117054285-117054525(+)$1	240	210	235	9.6800

#otherMatches

#Seq PSSM
CUAACAAUUUUCCUGUUUAUUUUGU	chr16:546658-546950(+)$1	292	129	154	9.2845
AGUAUUCAAGUCAAACAACGUUGAA	chr5:179047917-179048173(-)$1	256	135	160	8.8259
UGGAGACUGACAAAUUUGUGUUUUC	chr3:42662766-42663028(+)$1	262	120	145	8.9282
UGUUUUAAUAUUUUUGUUUAUUUUA	chr12:132198465-132198728(+)$1	263	18	43	12.3818
GUAGGUUGAGCUCGUCCCAGCCCCU	chr16:89976840-89977113(+)$1	273	231	256	9.0621
AUGCCCUCCGCUACCAUAUGGUGGG	chr5:135382388-135382640(+)$1	252	197	222	11.4975
CCACUGAGGCUAAGAUGACUGCCUU	chr20:42087683-42087927(+)$1	244	133	158	10.0648
AGAAAUUCUGUUCAUCUACAGAAAG	chr3:172025002-172025263(+)$1	261	46	71	7.9217
ACCCUAUGCCAACUUUCAAGGUACA	chr20:39796336-39796594(+)$1	258	213	238	9.5296
GCGCCUAUAAGAUCUAUGUUAUGGC	chr17:74308988-74309253(-)$1	265	217	242	12.0228
ugcagugagccaagaucgcgccauu	chr20:57569542-57569798(+)$1	256	12	37	8.1001
GUCAUUGAUGCCUAGAAUCAUCCUU	chr6:43495813-43496097(-)$1	284	34	59	11.4598
GGCUUUUGUUGAACUUGAAUCAGAA	chr5:179048271-179048511(-)$1	240	183	208	10.9317
UCUCACAGGUAAAGAGCCACCUGGA	chr1:19431020-19431308(-)$1	288	222	247	12.3143
UGAGCGCCAAAGAAUacacaugccc	chr9:117054285-117054525(+)$1	240	210	235	9.6800

#DB
..(((((..(........)..))))	chr16:546658-546950(+)$1	1	129	154	9.2845
(...(((((((......)).)))))	chr5:179047917-179048173(-)$1	1	135	160	8.8259
((((((..((((......)))).))	chr3:42662766-42663028(+)$1	1	120	145	8.9282
.(((..((((........))))..)	chr12:132198465-132198728(+)$1	1	18	43	12.3818
(((((..(.(((......)))))))	chr16:89976840-89977113(+)$1	1	231	256	9.0621
)))(((.(((........))).)))	chr5:135382388-135382640(+)$1	1	197	222	11.4975
(....(((((..........)))))	chr20:42087683-42087927(+)$1	1	133	158	10.0648
((...((((((......))))))..	chr3:172025002-172025263(+)$1	1	46	71	7.9217
...((.((((.........)))).)	chr20:39796336-39796594(+)$1	1	213	238	9.5296
(.(((.((((........)))))))	chr17:74308988-74309253(-)$1	1	217	242	12.0228
(((((((.(((......).))))))	chr20:57569542-57569798(+)$1	1	12	37	8.1001
((((..((((........))))..)	chr6:43495813-43496097(-)$1	1	34	59	11.4598
..((((((.(........).)))))	chr5:179048271-179048511(-)$1	1	183	208	10.9317
((...(((((........)))))))	chr1:19431020-19431308(-)$1	1	222	247	12.3143
((.(((..............))).)	chr9:117054285-117054525(+)$1	1	210	235	9.6800

#PSSM
d : 0.20	g : 0.20	c : 0.20	: : 0.06	[ : 0.06	i : 0.06	$ : 0.06	b : 0.06	# : 0.06	
g : 0.20	c : 0.20	# : 0.13	d : 0.13	: : 0.06	" : 0.06	i : 0.06	$ : 0.06	[ : 0.06	
" : 0.20	g : 0.20	c : 0.13	e : 0.06	i : 0.06	# : 0.06	$ : 0.06	d : 0.06	f : 0.06	[ : 0.06	
c : 0.26	" : 0.20	g : 0.13	e : 0.06	i : 0.06	# : 0.06	b : 0.06	d : 0.06	f : 0.06	
c : 0.20	e : 0.13	g : 0.13	! : 0.13	" : 0.13	i : 0.06	# : 0.06	b : 0.06	f : 0.06	
e : 0.26	! : 0.20	g : 0.13	c : 0.13	f : 0.13	[ : 0.13	
e : 0.26	d : 0.26	! : 0.13	f : 0.13	[ : 0.06	g : 0.06	w : 0.06	
d : 0.26	e : 0.20	! : 0.13	f : 0.13	a : 0.06	c : 0.06	[ : 0.06	w : 0.06	
d : 0.33	e : 0.20	[ : 0.13	! : 0.06	c : 0.06	f : 0.06	b : 0.06	w : 0.06	
d : 0.33	a : 0.13	b : 0.13	c : 0.13	e : 0.13	f : 0.06	w : 0.06	
q : 0.46	b : 0.06	d : 0.06	c : 0.06	s : 0.06	f : 0.06	r : 0.06	a : 0.06	w : 0.06	
q : 0.46	o : 0.20	d : 0.06	c : 0.06	s : 0.06	r : 0.06	w : 0.06	
q : 0.46	o : 0.33	s : 0.06	r : 0.06	w : 0.06	
q : 0.46	o : 0.33	s : 0.06	r : 0.06	w : 0.06	
q : 0.46	o : 0.33	s : 0.06	r : 0.06	w : 0.06	
q : 0.46	o : 0.33	s : 0.06	r : 0.06	w : 0.06	
q : 0.46	o : 0.33	s : 0.06	r : 0.06	w : 0.06	
q : 0.46	o : 0.13	b : 0.06	s : 0.06	f : 0.06	r : 0.06	a : 0.06	w : 0.06	
d : 0.26	a : 0.13	c : 0.13	b : 0.06	s : 0.06	f : 0.06	r : 0.06	] : 0.06	e : 0.06	w : 0.06	
d : 0.33	] : 0.13	c : 0.13	2 : 0.06	s : 0.06	f : 0.06	b : 0.06	e : 0.06	w : 0.06	
d : 0.33	e : 0.20	c : 0.20	f : 0.13	2 : 0.06	b : 0.06	
d : 0.33	e : 0.26	f : 0.13	a : 0.06	] : 0.06	g : 0.06	c : 0.06	
e : 0.26	c : 0.20	2 : 0.13	f : 0.13	] : 0.06	i : 0.06	d : 0.06	g : 0.06	
e : 0.20	c : 0.20	g : 0.13	2 : 0.13	] : 0.13	i : 0.06	3 : 0.06	f : 0.06	
c : 0.33	e : 0.20	g : 0.13	i : 0.06	3 : 0.06	b : 0.06	d : 0.06	f : 0.06	

#score	152.00561487064664
#seq	15
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF046VQV_MATR3_CDS_m3_run2.txt

#BEAR
::::::::::::::::::::::::	chr17:26937612-26937937(-)$1	325	37	61	10.6379
::::::::::::::::::::::::	chr11:85671690-85671975(-)$1	285	127	151	10.6379
::::::::::::::::::::::::	chr5:112227427-112227712(-)$1	285	0	24	10.6379
::::::::::::::::::::::::	chr19:45912364-45912598(-)$1	234	83	107	10.6379
::::::::::::::::::::::cc	chr19:45911700-45911969(-)$1	269	89	113	8.8379
::::::::::::::::::::::::	chrX:140994804-140995064(+)$1	260	154	178	10.6379
::::::::::::::::::::::::	chr5:176917483-176917826(-)$1	343	60	84	10.6379
::::::::::::::::::::::::	chr1:180042785-180043100(+)$1	315	70	94	10.6379
::::::::::::::::::::::::	chr14:104151845-104152128(+)$1	283	102	126	10.6379
::::::::::::::::::::::::	chr5:140967703-140967969(-)$1	266	111	135	10.6379
HHH:::::::::::::::::::::	chr12:57114071-57114378(-)$1	307	282	306	9.2850
::::::::::::::::::::::::	chr5:112227519-112227848(-)$1	329	123	147	10.6379
::::::::::::::::::::::::	chr16:15696267-15696601(-)$1	334	159	183	10.6379
::::::::::::::::::::::::	chrX:140994208-140994432(+)$1	224	0	24	10.6379
::::::::::::::::::::::::	chr20:35090762-35091075(+)$1	313	144	168	10.6379
::::::::::::::::::::::::	chr1:154131419-154131714(-)$1	295	0	24	10.6379
::::::::::::::::::::::::	chr19:45912464-45912723(-)$1	259	206	230	10.6379
::::::::::::::::EEEEE:::	chr19:45911819-45912145(-)$1	326	0	24	8.4717
::::::::::::::::::::::::	chr13:39587112-39587378(-)$1	266	6	30	10.6379
::::::::::::::::::::::::	chr3:99568718-99569008(+)$1	290	28	52	10.6379
::::::::::::::::::::::::	chr12:57114258-57114491(-)$1	233	0	24	10.6379

#otherMatches

#Seq PSSM
CUCCUUAUUCCCACCUUUGCCCCA	chr17:26937612-26937937(-)$1	325	37	61	10.6379
UCCCUCUCUCUGUCUUCUUUUCCC	chr11:85671690-85671975(-)$1	285	127	151	10.6379
cuucucucucuuuccucugcuguu	chr5:112227427-112227712(-)$1	285	0	24	10.6379
Cucucuuucuucuucuucuucuuc	chr19:45912364-45912598(-)$1	234	83	107	10.6379
AUUUUUUUUCUUCUUCUUCUUCCG	chr19:45911700-45911969(-)$1	269	89	113	8.8379
UGUCUCCUCACUACUUUCCUCAGA	chrX:140994804-140995064(+)$1	260	154	178	10.6379
cuuccuuccuuccuuccuuccuuc	chr5:176917483-176917826(-)$1	343	60	84	10.6379
UUCCCUUUCUCAUUCUUCCUGCCU	chr1:180042785-180043100(+)$1	315	70	94	10.6379
GUUUUCUCUCUCCUUUCUGUCUGA	chr14:104151845-104152128(+)$1	283	102	126	10.6379
AUUUCUCUUCUUUCUUCUCCCUCC	chr5:140967703-140967969(-)$1	266	111	135	10.6379
AUUAUCUCCUACAACCUCUCUCAU	chr12:57114071-57114378(-)$1	307	282	306	9.2850
uucugcuccuccucuucucucucu	chr5:112227519-112227848(-)$1	329	123	147	10.6379
ucuucaucuucuucaucuuugucu	chr16:15696267-15696601(-)$1	334	159	183	10.6379
UUCCUAUGACCUCCUCCUUCUCCU	chrX:140994208-140994432(+)$1	224	0	24	10.6379
UUGUCUCCCUCUCCCUUUUUCUGU	chr20:35090762-35091075(+)$1	313	144	168	10.6379
UGACUCUUAUUGCCCUCUAUCUGA	chr1:154131419-154131714(-)$1	295	0	24	10.6379
CUCucucuuucuucuucuucuucu	chr19:45912464-45912723(-)$1	259	206	230	10.6379
CUGUCACCCCCUCCUCUGGCUCCA	chr19:45911819-45912145(-)$1	326	0	24	8.4717
UCAAAUCCUCUUUCCUCUAUUUCC	chr13:39587112-39587378(-)$1	266	6	30	10.6379
CCUAUUUUUCAACAUAUUAACUCU	chr3:99568718-99569008(+)$1	290	28	52	10.6379
GCCUUAUCUCUUUCAACUCAGUCU	chr12:57114258-57114491(-)$1	233	0	24	10.6379

#DB
........................	chr17:26937612-26937937(-)$1	1	37	61	10.6379
........................	chr11:85671690-85671975(-)$1	1	127	151	10.6379
........................	chr5:112227427-112227712(-)$1	1	0	24	10.6379
........................	chr19:45912364-45912598(-)$1	1	83	107	10.6379
......................((	chr19:45911700-45911969(-)$1	1	89	113	8.8379
........................	chrX:140994804-140995064(+)$1	1	154	178	10.6379
........................	chr5:176917483-176917826(-)$1	1	60	84	10.6379
........................	chr1:180042785-180043100(+)$1	1	70	94	10.6379
........................	chr14:104151845-104152128(+)$1	1	102	126	10.6379
........................	chr5:140967703-140967969(-)$1	1	111	135	10.6379
))).....................	chr12:57114071-57114378(-)$1	1	282	306	9.2850
........................	chr5:112227519-112227848(-)$1	1	123	147	10.6379
........................	chr16:15696267-15696601(-)$1	1	159	183	10.6379
........................	chrX:140994208-140994432(+)$1	1	0	24	10.6379
........................	chr20:35090762-35091075(+)$1	1	144	168	10.6379
........................	chr1:154131419-154131714(-)$1	1	0	24	10.6379
........................	chr19:45912464-45912723(-)$1	1	206	230	10.6379
................(((((...	chr19:45911819-45912145(-)$1	1	0	24	8.4717
........................	chr13:39587112-39587378(-)$1	1	6	30	10.6379
........................	chr3:99568718-99569008(+)$1	1	28	52	10.6379
........................	chr12:57114258-57114491(-)$1	1	0	24	10.6379

#PSSM
: : 0.95	H : 0.04	
: : 0.95	H : 0.04	
: : 0.95	H : 0.04	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 0.95	E : 0.04	
: : 0.95	E : 0.04	
: : 0.95	E : 0.04	
: : 0.95	E : 0.04	
: : 0.95	E : 0.04	
: : 1.00	
: : 0.95	c : 0.04	
: : 0.95	c : 0.04	

#score	218.07859898272864
#seq	21
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF363IJZ_FXR2_UTR_m3_run1.txt

#BEAR
b[bb[cccqqqqqqqqccc]bb]	chr11:11863418-11863690(+)$1	272	55	78	15.1036
iiiii[bbqqqqqqqqbb]iiii	chr1:19423656-19423872(-)$1	216	16	39	15.6423
ccc"""bbqqqqqqqqbb]ccc4	chr12:56498410-56498668(+)$1	258	112	135	15.5244
!!bb[cccqqqqqqqqccc]bb2	chr15:30114104-30114417(-)$1	313	84	107	15.2647
gggaddddqqqqqqqqdddd:dd	chr5:145562018-145562280(-)$1	262	36	59	13.5570
b!!bb[bbqqqqqqqqbbbb22b	chr3:184019650-184019901(+)$1	251	72	95	13.6499
ddd[ddddqqqqqqqqdddd]dd	chr1:27022505-27022746(+)$1	241	51	74	14.4317
]cccddddqqqqqqqqdddd:gg	chr16:23847227-23847484(+)$1	257	90	113	13.6706
bbffffffqqqqqqqqffffff]	chr2:102314252-102314514(+)$1	262	18	41	14.1020
[bb[ddddqqqqqqqqdddd]bb	chr11:70279666-70279924(+)$1	258	42	65	14.1712
hhhh[cccqqqqqqqqccc]hhh	chr19:42399324-42399580(+)$1	256	166	189	15.1213
ddd!!cccqqqqqqqqccc4444	chr3:184017965-184018250(+)$1	285	146	169	15.8170
eeee[cccqqqqqqqqccceeee	chr1:19430481-19430728(-)$1	247	163	186	15.3450
dddd!!bbqqqqqqqqbb333dd	chr19:10264969-10265256(-)$1	287	95	118	14.9240
!!bbddddqqqqqqqqdddd>>>	chr3:184020437-184020675(+)$1	238	180	203	14.0278
fff"""bbqqqqqqqqbb]ffff	chr16:89350153-89350396(-)$1	243	163	186	14.8035
""ffffffqqqqqqqqffffff2	chr3:47890609-47890859(+)$1	250	68	91	14.3398
dddd!!bbqqqqqqqqbb]dddd	chr19:41798073-41798365(+)$1	292	55	78	14.6331
ee[eeeeeqqqqqqqqeeeeeee	chr19:10789195-10789453(+)$1	258	199	222	14.2976
[cccddddqqqqqqqqdddd333	chr6:7249013-7249319(+)$1	306	102	125	15.4384
eeee[cccqqqqqqqqccceeee	chr1:193028643-193028969(+)$1	326	287	310	15.3450
[eeeee[aqqqqqqqqaeeeee]	chr19:10790415-10790704(+)$1	289	261	284	14.8680
hhhhhhbbqqqqqqqqbb]hhhh	chrX:153583105-153583325(-)$1	220	118	141	14.0551
hhffffffqqqqqqqqffffff:	chrX:153586467-153586710(-)$1	243	182	205	13.2192
fffffcccqqqqqqqqccc]fff	chr17:38573972-38574245(-)$1	273	9	32	15.0829
ffccc[bbqqqqqqqqbb]ccc]	chr11:57076491-57076751(-)$1	260	228	251	15.3475
:gggggggqqqqqqqqggggggg	chr19:41781970-41782222(+)$1	252	70	93	14.1940
b[ffffffqqqqqqqqffffff]	chrX:153589652-153589873(-)$1	221	84	107	14.3684
hh"""cccqqqqqqqqccc]hhh	chr17:80441510-80441752(+)$1	242	199	222	15.2806
:ccc[cccqqqqqqqqccc]ccc	chr9:95077209-95077503(-)$1	294	118	141	15.0726
eeeee[bbqqqqqqqqbb]eeee	chr7:2400418-2400637(+)$1	219	157	180	14.7924
gggggg[aqqqqqqqqa]ggggg	chr19:10439299-10439613(-)$1	314	72	95	15.1772
"""eeeeeqqqqqqqqeeeee66	chr12:125051766-125052164(-)$1	398	108	131	13.6975
iiiiiiiiqqqqqqqqiiiiiii	chr1:220267446-220267710(+)$1	264	54	77	15.3603
ccc[ddddqqqqqqqqdddd]cc	chr1:220267510-220267761(+)$1	251	124	147	15.0264
iiiiiiiiqqqqqqqqiiiiiii	chrX:153588098-153588322(-)$1	224	113	136	15.3603
a!!eeeeeqqqqqqqqeeeee22	chr16:3708031-3708300(-)$1	269	229	252	14.7669
[bbeeeeeqqqqqqqqeeeee22	chr11:34073188-34073517(+)$1	329	27	50	14.3401
hhhhhhbbqqqqqqqqbb]hhhh	chrX:153583092-153583305(-)$1	213	98	121	14.0551
ddffffffqqqqqqqqffffff]	chr19:19115044-19115322(-)$1	278	117	140	14.3532
========qqqqqqqq=======	chr18:12376986-12377333(-)$1	347	277	300	15.6383
ccccccbbqqqqqqqqbb]ccc]	chr1:27106601-27106853(+)$1	252	115	138	15.6384
ffff[cccqqqqqqqqccc]fff	chr15:65477321-65477698(-)$1	377	216	239	15.4017
[bb!!cccqqqqqqqqcccbb]e	chr14:102505279-102505525(+)$1	246	162	185	15.1347
c!!eeeeeqqqqqqqqeeeee22	chr12:116714764-116715052(-)$1	288	153	176	14.8002
"ccc!!bbqqqqqqqqbbccc22	chr16:3722654-3722917(-)$1	263	135	158	15.7280
dd[cccbbqqqqqqqqbb]ccc]	chr3:184041199-184041444(+)$1	245	62	85	15.5227
fffeeeeeqqqqqqqqeeeee]f	chr8:53626635-53626905(-)$1	270	159	182	14.2701
"""ccc[aqqqqqqqqaccc22e	chr12:98909292-98909540(+)$1	248	202	225	15.2744
c[ffffffqqqqqqqqffffffc	chrX:153582883-153583090(-)$1	207	180	203	14.3411
eee[ddddqqqqqqqqddddeee	chr9:95025190-95025436(-)$1	246	209	232	14.4511
dddd[cccqqqqqqqqccc]ddd	chr12:57039638-57039849(-)$1	211	88	111	15.0854
fff!!cccqqqqqqqqccc22ff	chr7:2420011-2420239(+)$1	228	147	170	15.2915
dd[ccc[aqqqqqqqqa]ccc]d	chr3:184038995-184039239(+)$1	244	200	223	15.1281
bb[eeeeeqqqqqqqqeeeee]b	chrX:153588487-153588699(-)$1	212	51	74	14.0751
ccccc[bbqqqqqqqqbbccc]c	chr19:5695964-5696210(-)$1	246	84	107	15.5167
$bb[ddddqqqqqqqqdddd]bb	chrX:153590806-153591022(-)$1	216	97	120	13.8576
eea!!cccqqqqqqqqccc22a]	chr17:4578033-4578317(-)$1	284	20	43	15.7176
hhhh!!bbqqqqqqqqbb]hhhh	chr16:30537898-30538167(-)$1	269	28	51	14.5807
Gccc[cccqqqqqqqqccc]ccc	chr5:70883088-70883461(+)$1	373	86	109	15.4042
ddd[cccaqqqqqqqqa]ccc22	chr19:14582295-14582572(+)$1	277	200	223	15.2882
dd!!ddddqqqqqqqqdddd333	chr2:96940504-96940725(-)$1	221	66	89	15.3578
ca"""cccqqqqqqqqccc333a	chr19:10248497-10248781(-)$1	284	109	132	16.0863
ddddddddqqqqqqqqdddd333	chr15:63901145-63901437(-)$1	292	90	113	14.8758

#otherMatches

#Seq PSSM
CCGCCAUUUUUCCAUUGAUUGCA	chr11:11863418-11863690(+)$1	272	55	78	15.1036
CUUUAAGCAAGACCAAGUAUGGA	chr1:19423656-19423872(-)$1	216	16	39	15.6423
UGUCGGGCGAGGACGAGCAACAG	chr12:56498410-56498668(+)$1	258	112	135	15.5244
UCUCGGGAGAUGUUUAUUUGGGC	chr15:30114104-30114417(-)$1	313	84	107	15.2647
CGGCGGGCUGUGAGAUGCCUUGG	chr5:145562018-145562280(-)$1	262	36	59	13.5570
GAAAUCGUCCCCUAUAACAUGGC	chr3:184019650-184019901(+)$1	251	72	95	13.6499
GGGAGCGGAGCCUCCACCGCCCC	chr1:27022505-27022746(+)$1	241	51	74	14.4317
AGCUGGGCGAGUGACAgccccgg	chr16:23847227-23847484(+)$1	257	90	113	13.6706
cgggggccugacggccggccccg	chr2:102314252-102314514(+)$1	262	18	41	14.1020
UGUGGGACUUUGUAUUGUUCAGC	chr11:70279666-70279924(+)$1	258	42	65	14.1712
CUCCUGGGCAGGACACCCCUGGA	chr19:42399324-42399580(+)$1	256	166	189	15.1213
AAGGCAGAUUCGUUCUUCUACAA	chr3:184017965-184018250(+)$1	285	146	169	15.8170
AGUGGCCUGGAGCCUAAGGCACU	chr1:19430481-19430728(-)$1	247	163	186	15.3450
CCGUAGGCGAGCCCAGGCGAGGC	chr19:10264969-10265256(-)$1	287	95	118	14.9240
CUGCCCUUUUUUCAUCAAGGCCU	chr3:184020437-184020675(+)$1	238	180	203	14.0278
GAAAGAAGGACAGGGACUAUUUG	chr16:89350153-89350396(-)$1	243	163	186	14.8035
CUAGGACUCAUCAAGCAGUUCUC	chr3:47890609-47890859(+)$1	250	68	91	14.3398
UCCUUUGGCUUUUUCUCCUAGGA	chr19:41798073-41798365(+)$1	292	55	78	14.6331
CUUCUAUUUGUCUUUUGGUAGAG	chr19:10789195-10789453(+)$1	258	199	222	14.2976
ACCUGCUGGAGCCGCGCAGCAAG	chr6:7249013-7249319(+)$1	306	102	125	15.4384
UGGGAGCCUUUUGUGCGGCCCCA	chr1:193028643-193028969(+)$1	326	287	310	15.3450
UGGGUUAGGACAGCAGCAGCCCC	chr19:10790415-10790704(+)$1	289	261	284	14.8680
CCCUUCCAAGUGACGGUGAGGAG	chrX:153583105-153583325(-)$1	220	118	141	14.0551
GGGCGGCUGGAGUGUGGGCUGCG	chrX:153586467-153586710(-)$1	243	182	205	13.2192
UUCUUCUGGACGGAGACGGUGAG	chr17:38573972-38574245(-)$1	273	9	32	15.0829
GAGUUGGGGAGAAGGACUGGACU	chr11:57076491-57076751(-)$1	260	228	251	15.3475
ACUGUGGGCAUUUUCCUUCACAG	chr19:41781970-41782222(+)$1	252	70	93	14.1940
CGCUUCCUGCCCCGUGAGGAAGG	chrX:153589652-153589873(-)$1	221	84	107	14.3684
UGCCAGCCACCUGCCAGGCCCAG	chr17:80441510-80441752(+)$1	242	199	222	15.2806
AGUGAUGGACCAGAAACCACCAC	chr9:95077209-95077503(-)$1	294	118	141	15.0726
GGCACGUCAUGAUGAGGGAGUGU	chr7:2400418-2400637(+)$1	219	157	180	14.7924
CUGAGUACAUGAAGAAGGACUCG	chr19:10439299-10439613(-)$1	314	72	95	15.1772
cccUGCGCUCCGCGAUGCGCGCC	chr12:125051766-125052164(-)$1	398	108	131	13.6975
CCUGCCCCUUCAAGCUGGGGCGG	chr1:220267446-220267710(+)$1	264	54	77	15.3603
GCCUUCCCUGCAGCCCGGGAUGG	chr1:220267510-220267761(+)$1	251	124	147	15.0264
GCCGCACGUCAAGGCCCGUGUGG	chrX:153588098-153588322(-)$1	224	113	136	15.3603
AUUUACCUAAAUUUAAAGGUAUU	chr16:3708031-3708300(-)$1	269	229	252	14.7669
CGCCCCUCGCGACCCAGAGGGCU	chr11:34073188-34073517(+)$1	329	27	50	14.3401
CCCUUCCAAGUGACGGUGAGGAG	chrX:153583092-153583305(-)$1	213	98	121	14.0551
gaugggggagaggaggCCCCCGC	chr19:19115044-19115322(-)$1	278	117	140	14.3532
GGGGCCGGGGCGGCUGCUGGCCC	chr18:12376986-12377333(-)$1	347	277	300	15.6383
GCCGUCCUUUCCCCGCAGAGACU	chr1:27106601-27106853(+)$1	252	115	138	15.6384
UGCGGUGCUUGUACUUGCGGCGC	chr15:65477321-65477698(-)$1	377	216	239	15.4017
GAGAACCUGAAGAGAGAGGCUGC	chr14:102505279-102505525(+)$1	246	162	185	15.1347
GCCUGGAGGAUUGUCACUCCAAC	chr12:116714764-116715052(-)$1	288	153	176	14.8002
AGCGUUGCACUGUACAGCCGCAA	chr16:3722654-3722917(-)$1	263	135	158	15.7280
GUGUUAAUGACCGAAGAUAUAAA	chr3:184041199-184041444(+)$1	245	62	85	15.5227
GGUGCCGAAUGGGCGGUUGGUAA	chr8:53626635-53626905(-)$1	270	159	182	14.2701
UCCGCGAGUUUUUGUUCCGCUCC	chr12:98909292-98909540(+)$1	248	202	225	15.2744
GAGGAGGGACCCCAGAUCCUCCC	chrX:153582883-153583090(-)$1	207	180	203	14.3411
CGGGUGGAACUUUGUCUCCACUG	chr9:95025190-95025436(-)$1	246	209	232	14.4511
ACCCGGACUACGCCAUGUUGGGG	chr12:57039638-57039849(-)$1	211	88	111	15.0854
UGGCGGCACCUUCUCCUGCGCCC	chr7:2420011-2420239(+)$1	228	147	170	15.2915
GGUCUGAGCCUAAUCUCGCAGUC	chr3:184038995-184039239(+)$1	244	200	223	15.1281
GGGCCACCGCUGGGGAGGUGGGC	chrX:153588487-153588699(-)$1	212	51	74	14.0751
ACCGUAUGGAGAUGAUCAACGUG	chr19:5695964-5696210(-)$1	246	84	107	15.5167
AGUGUGCCCCUGGAGUGGUAGGC	chrX:153590806-153591022(-)$1	216	97	120	13.8576
CAUGUUGACCCCCCAUUCAUAAC	chr17:4578033-4578317(-)$1	284	20	43	15.7176
UCCUGUGCGGGGGAGGGUGGGGG	chr16:30537898-30538167(-)$1	269	28	51	14.5807
CCCCAGCCAGGGAAGCGGCAGGG	chr5:70883088-70883461(+)$1	373	86	109	15.4042
GGGAGGCCCCCACACUGAGCCCG	chr19:14582295-14582572(+)$1	277	200	223	15.2882
UGUGGGCCUCAGGUCUGGCCAGC	chr2:96940504-96940725(-)$1	221	66	89	15.3578
CCUUUCCGGACCAUCACGGUGCG	chr19:10248497-10248781(-)$1	284	109	132	16.0863
UCGACAUGGACAACUACAUGCUC	chr15:63901145-63901437(-)$1	292	90	113	14.8758

#DB
(.((.(((........))).)).	chr11:11863418-11863690(+)$1	1	55	78	15.1036
(((((.((........)).))))	chr1:19423656-19423872(-)$1	1	16	39	15.6423
(((...((........)).))).	chr12:56498410-56498668(+)$1	1	112	135	15.5244
..((.(((........))).)).	chr15:30114104-30114417(-)$1	1	84	107	15.2647
))))((((........)))).((	chr5:145562018-145562280(-)$1	1	36	59	13.5570
(..((.((........))))..)	chr3:184019650-184019901(+)$1	1	72	95	13.6499
(((.((((........)))).))	chr1:27022505-27022746(+)$1	1	51	74	14.4317
.)))((((........)))).((	chr16:23847227-23847484(+)$1	1	90	113	13.6706
((((((((........)))))).	chr2:102314252-102314514(+)$1	1	18	41	14.1020
.((.((((........)))).))	chr11:70279666-70279924(+)$1	1	42	65	14.1712
((((.(((........))).)))	chr19:42399324-42399580(+)$1	1	166	189	15.1213
(((..(((........)))....	chr3:184017965-184018250(+)$1	1	146	169	15.8170
((((.(((........)))))))	chr1:19430481-19430728(-)$1	1	163	186	15.3450
((((..((........))...))	chr19:10264969-10265256(-)$1	1	95	118	14.9240
..((((((........))))...	chr3:184020437-184020675(+)$1	1	180	203	14.0278
(((...((........)).))))	chr16:89350153-89350396(-)$1	1	163	186	14.8035
..((((((........)))))).	chr3:47890609-47890859(+)$1	1	68	91	14.3398
((((..((........)).))))	chr19:41798073-41798365(+)$1	1	55	78	14.6331
((.(((((........)))))))	chr19:10789195-10789453(+)$1	1	199	222	14.2976
.(((((((........))))...	chr6:7249013-7249319(+)$1	1	102	125	15.4384
((((.(((........)))))))	chr1:193028643-193028969(+)$1	1	287	310	15.3450
.(((((.(........)))))).	chr19:10790415-10790704(+)$1	1	261	284	14.8680
((((((((........)).))))	chrX:153583105-153583325(-)$1	1	118	141	14.0551
))((((((........)))))).	chrX:153586467-153586710(-)$1	1	182	205	13.2192
((((((((........))).)))	chr17:38573972-38574245(-)$1	1	9	32	15.0829
(((((.((........)).))).	chr11:57076491-57076751(-)$1	1	228	251	15.3475
.(((((((........)))))))	chr19:41781970-41782222(+)$1	1	70	93	14.1940
(.((((((........)))))).	chrX:153589652-153589873(-)$1	1	84	107	14.3684
((...(((........))).)))	chr17:80441510-80441752(+)$1	1	199	222	15.2806
.(((.(((........))).)))	chr9:95077209-95077503(-)$1	1	118	141	15.0726
(((((.((........)).))))	chr7:2400418-2400637(+)$1	1	157	180	14.7924
((((((.(........).)))))	chr19:10439299-10439613(-)$1	1	72	95	15.1772
...(((((........)))))..	chr12:125051766-125052164(-)$1	1	108	131	13.6975
((((((((........)))))))	chr1:220267446-220267710(+)$1	1	54	77	15.3603
(((.((((........)))).))	chr1:220267510-220267761(+)$1	1	124	147	15.0264
((((((((........)))))))	chrX:153588098-153588322(-)$1	1	113	136	15.3603
(..(((((........)))))..	chr16:3708031-3708300(-)$1	1	229	252	14.7669
.(((((((........)))))..	chr11:34073188-34073517(+)$1	1	27	50	14.3401
((((((((........)).))))	chrX:153583092-153583305(-)$1	1	98	121	14.0551
((((((((........)))))).	chr19:19115044-19115322(-)$1	1	117	140	14.3532
((((((((........)))))))	chr18:12376986-12377333(-)$1	1	277	300	15.6383
((((((((........)).))).	chr1:27106601-27106853(+)$1	1	115	138	15.6384
((((.(((........))).)))	chr15:65477321-65477698(-)$1	1	216	239	15.4017
.((..(((........))))).)	chr14:102505279-102505525(+)$1	1	162	185	15.1347
(..(((((........)))))..	chr12:116714764-116715052(-)$1	1	153	176	14.8002
.(((..((........)))))..	chr16:3722654-3722917(-)$1	1	135	158	15.7280
((.(((((........)).))).	chr3:184041199-184041444(+)$1	1	62	85	15.5227
((((((((........))))).)	chr8:53626635-53626905(-)$1	1	159	182	14.2701
...(((.(........))))..)	chr12:98909292-98909540(+)$1	1	202	225	15.2744
(.((((((........)))))))	chrX:153582883-153583090(-)$1	1	180	203	14.3411
(((.((((........)))))))	chr9:95025190-95025436(-)$1	1	209	232	14.4511
((((.(((........))).)))	chr12:57039638-57039849(-)$1	1	88	111	15.0854
(((..(((........)))..))	chr7:2420011-2420239(+)$1	1	147	170	15.2915
((.(((.(........).))).)	chr3:184038995-184039239(+)$1	1	200	223	15.1281
((.(((((........))))).)	chrX:153588487-153588699(-)$1	1	51	74	14.0751
(((((.((........))))).)	chr19:5695964-5696210(-)$1	1	84	107	15.5167
.((.((((........)))).))	chrX:153590806-153591022(-)$1	1	97	120	13.8576
(((..(((........)))..).	chr17:4578033-4578317(-)$1	1	20	43	15.7176
((((..((........)).))))	chr16:30537898-30538167(-)$1	1	28	51	14.5807
((((.(((........))).)))	chr5:70883088-70883461(+)$1	1	86	109	15.4042
(((.((((........).)))..	chr19:14582295-14582572(+)$1	1	200	223	15.2882
((..((((........))))...	chr2:96940504-96940725(-)$1	1	66	89	15.3578
((...(((........)))...)	chr19:10248497-10248781(-)$1	1	109	132	16.0863
((((((((........))))...	chr15:63901145-63901437(-)$1	1	90	113	14.8758

#PSSM
d : 0.17	c : 0.10	h : 0.09	e : 0.09	f : 0.09	b : 0.07	[ : 0.07	" : 0.06	i : 0.04	! : 0.03	g : 0.03	: : 0.03	] : 0.01	a : 0.01	= : 0.01	$ : 0.01	G : 0.01	
d : 0.17	c : 0.14	e : 0.10	b : 0.09	h : 0.09	f : 0.09	! : 0.07	[ : 0.04	i : 0.04	g : 0.04	" : 0.04	= : 0.01	a : 0.01	
f : 0.17	c : 0.15	b : 0.10	d : 0.10	e : 0.07	! : 0.06	h : 0.06	[ : 0.06	" : 0.06	i : 0.04	g : 0.04	= : 0.01	a : 0.01	
c : 0.17	e : 0.17	f : 0.12	[ : 0.09	! : 0.07	b : 0.06	" : 0.06	h : 0.06	d : 0.06	i : 0.04	g : 0.03	a : 0.01	= : 0.01	
d : 0.17	[ : 0.14	e : 0.14	! : 0.12	f : 0.10	c : 0.10	" : 0.06	i : 0.04	h : 0.03	g : 0.03	b : 0.01	= : 0.01	
c : 0.32	d : 0.17	e : 0.12	f : 0.09	[ : 0.07	! : 0.06	" : 0.03	h : 0.03	g : 0.03	i : 0.03	= : 0.01	
c : 0.26	b : 0.23	d : 0.17	e : 0.10	f : 0.09	[ : 0.06	i : 0.03	g : 0.01	= : 0.01	
c : 0.25	b : 0.23	d : 0.17	e : 0.10	f : 0.09	a : 0.07	i : 0.03	g : 0.01	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.25	b : 0.23	d : 0.17	e : 0.10	f : 0.09	a : 0.07	i : 0.03	g : 0.01	= : 0.01	
c : 0.26	b : 0.23	d : 0.17	e : 0.12	f : 0.09	] : 0.04	i : 0.03	g : 0.01	= : 0.01	
c : 0.32	] : 0.17	d : 0.17	e : 0.12	f : 0.09	g : 0.03	i : 0.03	b : 0.01	3 : 0.01	= : 0.01	
d : 0.18	e : 0.17	] : 0.14	c : 0.14	f : 0.10	i : 0.04	h : 0.04	b : 0.03	3 : 0.03	g : 0.03	2 : 0.03	4 : 0.01	= : 0.01	
e : 0.18	c : 0.15	f : 0.14	h : 0.07	3 : 0.07	2 : 0.06	] : 0.06	b : 0.04	i : 0.04	: : 0.03	d : 0.03	g : 0.03	4 : 0.01	> : 0.01	= : 0.01	
f : 0.15	c : 0.10	2 : 0.10	e : 0.09	d : 0.07	h : 0.07	] : 0.07	b : 0.06	3 : 0.06	i : 0.04	g : 0.04	4 : 0.01	> : 0.01	6 : 0.01	= : 0.01	a : 0.01	
] : 0.14	2 : 0.10	e : 0.10	d : 0.09	h : 0.07	f : 0.07	c : 0.07	b : 0.06	i : 0.04	g : 0.04	3 : 0.04	4 : 0.03	> : 0.01	: : 0.01	6 : 0.01	= : 0.01	a : 0.01	

#score	950.0962000552169
#seq	64
#width	23
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF846JEW_DDX6_CDS_m2_run1.txt

#BEAR
cc"""bbqqqqqqqqbb333c	chr1:44441378-44441621(+)$1	243	192	213	13.9269
eee[cccqqqqqqqqccc22e	chr4:100870766-100871003(-)$1	237	135	156	13.9616
!ffffffqqqqqqqqffffff	chr14:21484873-21485142(-)$1	269	132	153	13.5394
c[eeeeeqqqqqqqqeeeee]	chr16:2564046-2564276(+)$1	230	178	199	14.4414
!!a[cccqqqqqqqqccc]ae	chr6:26056315-26056540(-)$1	225	95	116	14.8262
ffff[bbqqqqqqqqbb]fff	chr11:64013994-64014277(-)$1	283	233	254	13.6181
!!eeeeerrrrrrrrreeeee	chr6:26056274-26056515(-)$1	241	135	156	8.6049
::cccbbqqqqqqqqbb]ccc	chr11:5290963-5291215(-)$1	252	58	79	12.0673
eee[cccqqqqqqqqccc]ee	chr1:153617436-153617719(+)$1	283	178	199	14.4112
ggggcccqqqqqqqqccc]gg	chr1:110948859-110949101(-)$1	242	126	147	14.5003
!!eeeeeqqqqqqqqeeeee5	chr16:88782358-88782602(-)$1	244	31	52	13.7819
ggggggrrrrrrrrrgggggg	chr7:100466353-100466588(+)$1	235	6	27	8.1206
ggggg[aqqqqqqqqaggggg	chr15:79170449-79170688(+)$1	239	145	166	14.1400
dd!!cccrrrrrrrrrcccdd	chr2:98263787-98264006(+)$1	219	63	84	7.8941
b[cccbbqqqqqqqqbb]ccc	chr11:1977534-1977816(+)$1	282	37	58	13.6823
:ffffffqqqqqqqqffffff	chr17:26911569-26911858(-)$1	289	38	59	12.4676
[bb!!bbqqqqqqqqbb22bb	chr6:2948363-2948640(-)$1	277	166	187	13.2722
""eeeeeqqqqqqqqeeeee]	chr4:110745473-110745681(+)$1	208	137	158	14.5460
[eeeeerrrrrrrrreeeee]	chr17:73774687-73774904(-)$1	217	10	31	8.4811
f[eeeeeqqqqqqqqeeeee]	chr1:24021128-24021350(+)$1	222	175	196	14.3805
'''ddddqqqqqqqqdddd]=	chr11:67379801-67380062(+)$1	261	18	39	11.9520
ggeeeeeqqqqqqqqeeeee:	chr3:197677929-197678149(+)$1	220	164	185	13.4576
bb!!cccqqqqqqqqccc22b	chr20:2639049-2639343(-)$1	294	70	91	13.6822
ddd[cccqqqqqqqqcccddd	chr11:64084708-64084934(-)$1	226	56	77	13.6560
!bb[cccqqqqqqqqccc]bb	chr11:5290679-5290931(-)$1	252	9	30	14.1083
ccc[cccqqqqqqqqccc]cc	chr1:228680815-228681045(+)$1	230	110	131	14.5213
c[bbcccqqqqqqqqccc]bb	chr2:98264358-98264605(+)$1	247	172	193	13.6852
[bb!!bbqqqqqqqqbb22bb	chr2:27255798-27256086(+)$1	288	213	234	13.2722
ccc[cccqqqqqqqqccc]cc	chr2:98263437-98263704(+)$1	267	199	220	14.5213
"""ddddqqqqqqqqdddd]b	chr19:54972294-54972542(+)$1	248	140	161	13.5868
ccc[cccqqqqqqqqcccccc	chr17:45300288-45300524(+)$1	236	133	154	14.3333
""eeeeeqqqqqqqqeeeee]	chr4:110745481-110745744(+)$1	263	129	150	14.5460
h[eeeeeqqqqqqqqeeeee]	chrX:11316666-11316982(-)$1	316	90	111	14.2454
FFeeeeeqqqqqqqqeeeee:	chr19:49377746-49377981(+)$1	235	184	205	12.6469
dd[ddddqqqqqqqqdddd]d	chr15:91503029-91503313(+)$1	284	184	205	13.0514
!ffffffqqqqqqqqffffff	chr14:21484942-21485194(-)$1	252	184	205	13.5394
eee!!bbqqqqqqqqbb22ee	chr1:24021054-24021277(+)$1	223	137	158	13.6015
[bbddddqqqqqqqqdddd44	chr1:23695686-23695924(+)$1	238	45	66	13.2578
"""ddddqqqqqqqqdddd]c	chr19:14629044-14629306(-)$1	262	145	166	13.7570
gggggggqqqqqqqqgggggg	chr12:22215215-22215469(+)$1	254	126	147	13.9465
iiiiiiiqqqqqqqqiiiiii	chr12:56553661-56553951(+)$1	290	109	130	13.8452
fffff[aqqqqqqqqa]ffff	chr7:128502827-128503099(+)$1	272	74	95	13.4932
GGeeeeeqqqqqqqqeeeee:	chr5:177577788-177578066(-)$1	278	82	103	12.5414
f[eeeeeqqqqqqqqeeeeef	chr7:150647086-150647345(-)$1	259	168	189	14.2804
ddd[a[aqqqqqqqqa]a]dd	chr5:180651175-180651438(+)$1	263	123	144	13.3931
ee[ddddqqqqqqqqdddd]e	chr19:50363438-50363689(+)$1	251	69	90	13.2291
[bb!!bbqqqqqqqqbbbb]f	chr1:228333110-228333374(+)$1	264	143	164	13.3168
''eeeeeqqqqqqqqeeeee2	chr1:33820613-33820900(+)$1	287	198	219	13.0480
c[bb[bbqqqqqqqqbb]bb]	chr19:4402635-4402911(+)$1	276	46	67	13.0851
c:cccbbqqqqqqqqbb]ccc	chr12:22217955-22218212(+)$1	257	28	49	12.9236
ff[bb[aqqqqqqqqa]bbff	chr11:62303322-62303625(-)$1	303	159	180	12.5450
ffff[bbqqqqqqqqbbffff	chr19:4037225-4037477(+)$1	252	33	54	13.5336

#otherMatches

#Seq PSSM
UCUCUUCUUUUCUCUGGUCUG	chr1:44441378-44441621(+)$1	243	192	213	13.9269
AAAGGCCAAGACAAAGGCGGU	chr4:100870766-100871003(-)$1	237	135	156	13.9616
ACCACACUGUAGUAUGUGUGG	chr14:21484873-21485142(-)$1	269	132	153	13.5394
GCGUUGCUCAUGCCCGCAGCU	chr16:2564046-2564276(+)$1	230	178	199	14.4414
AUGAUGUGGAGAAAAACAACA	chr6:26056315-26056540(-)$1	225	95	116	14.8262
CGGGGCCGCAGGAGAGGGCCC	chr11:64013994-64014277(-)$1	283	233	254	13.6181
CUGGUGCAAACGAAAGGCACC	chr6:26056274-26056515(-)$1	241	135	156	8.6049
CAGCUGCAAUCACUAGCAAGC	chr11:5290963-5291215(-)$1	252	58	79	12.0673
UUGCUCGCCCUGUAUUGACCA	chr1:153617436-153617719(+)$1	283	178	199	14.4112
UCCUGUGCACAGAUUCACAAG	chr1:110948859-110949101(-)$1	242	126	147	14.5003
GAGGGGUGACCUGCGGCCUCA	chr16:88782358-88782602(-)$1	244	31	52	13.7819
CCAGGCCGAGGUGAAGUCUGG	chr7:100466353-100466588(+)$1	235	6	27	8.1206
AGCAAAGGUAUGAAACUUGUU	chr15:79170449-79170688(+)$1	239	145	166	14.1400
GGAAGACCCUAAUUUAGUCCC	chr2:98263787-98264006(+)$1	219	63	84	7.8941
CAUGCUCGAGGAGGAGAGGCA	chr11:1977534-1977816(+)$1	282	37	58	13.6823
UCCUGGGAUUAUUGAUUCAGG	chr17:26911569-26911858(-)$1	289	38	59	12.4676
UGUGCCUGCAACCCAAGUGGC	chr6:2948363-2948640(-)$1	277	166	187	13.2722
CAGUUGACUUCUGCAUUAACC	chr4:110745473-110745681(+)$1	208	137	158	14.5460
GCAGGUAAGACAAAGGCCUGG	chr17:73774687-73774904(-)$1	217	10	31	8.4811
CGCUCCUGGUCUGUGAGGAGA	chr1:24021128-24021350(+)$1	222	175	196	14.3805
CAUGGUCCCCCCACCGACCCC	chr11:67379801-67380062(+)$1	261	18	39	11.9520
GCUCUUCUUAAAAUUGAAGGU	chr3:197677929-197678149(+)$1	220	164	185	13.4576
GGUUGUCCUUGGGCCGGCUUC	chr20:2639049-2639343(-)$1	294	70	91	13.6822
GGCCGGGGUCCAGUGCUUGCC	chr11:64084708-64084934(-)$1	226	56	77	13.6560
UGGUGUCAUUUCAUAGACUCC	chr11:5290679-5290931(-)$1	252	9	30	14.1083
CGGAGCUGGAGAAGAAGCAUC	chr1:228680815-228681045(+)$1	230	110	131	14.5213
GAGCCCAUUACAAGCUGGUGC	chr2:98264358-98264605(+)$1	247	172	193	13.6852
AGUGUGGAAAUACGACCUGAC	chr2:27255798-27256086(+)$1	288	213	234	13.2722
AACUUAUGGCCUUGGAUGUGU	chr2:98263437-98263704(+)$1	267	199	220	14.5213
ACUCCGGUACCCGACCCGGCG	chr19:54972294-54972542(+)$1	248	140	161	13.5868
AGGUGAGUGCAGCCUCUCCCU	chr17:45300288-45300524(+)$1	236	133	154	14.3333
CAGUUGACUUCUGCAUUAACC	chr4:110745481-110745744(+)$1	263	129	150	14.5460
GGCGGGCGGAGGGAGGUUUGG	chrX:11316666-11316982(-)$1	316	90	111	14.2454
GGCUGGGGAUAUCGACCUGGA	chr19:49377746-49377981(+)$1	235	184	205	12.6469
CUGUCGCAAGGGAAGGUGAGG	chr15:91503029-91503313(+)$1	284	184	205	13.0514
ACCACACUGUAGUAUGUGUGG	chr14:21484942-21485194(-)$1	252	184	205	13.5394
GGAAACUUUGGUUUUGGGAUC	chr1:24021054-24021277(+)$1	223	137	158	13.6015
GCCUCCCGCACCGAAGGGACC	chr1:23695686-23695924(+)$1	238	45	66	13.2578
AUGGGUAAAGACUACUACCAG	chr19:14629044-14629306(-)$1	262	145	166	13.7570
UGUGCUGGAAAGAAGUGGCAU	chr12:22215215-22215469(+)$1	254	126	147	13.9465
AGGUGCUGGACUUUGAGCACU	chr12:56553661-56553951(+)$1	290	109	130	13.8452
GAGGCGGGGUUUCAGUGGCUU	chr7:128502827-128503099(+)$1	272	74	95	13.4932
UUGGCAGGAGACACACUGCCC	chr5:177577788-177578066(-)$1	278	82	103	12.5414
CACUGGGGCUGUGGACCUGGG	chr7:150647086-150647345(-)$1	259	168	189	14.2804
GGAGGAAGAAGAGGGUGUGUU	chr5:180651175-180651438(+)$1	263	123	144	13.3931
CUGAUUUCUCGCCGUAGAUGG	chr19:50363438-50363689(+)$1	251	69	90	13.2291
GAGCUGGGAAGAGCACCCUGC	chr1:228333110-228333374(+)$1	264	143	164	13.3168
GAUGGCUGUGGGAGGAGCUGG	chr1:33820613-33820900(+)$1	287	198	219	13.0480
gagggcgaagagcagcggccg	chr19:4402635-4402911(+)$1	276	46	67	13.0851
UGUCUGCAUUAUUUAGCUAGA	chr12:22217955-22218212(+)$1	257	28	49	12.9236
GGAGGUGACGCAGAACUCCCC	chr11:62303322-62303625(-)$1	303	159	180	12.5450
UCUUGCAGAGAGAAGUGGGGA	chr19:4037225-4037477(+)$1	252	33	54	13.5336

#DB
((...((........))...)	chr1:44441378-44441621(+)$1	1	192	213	13.9269
(((.(((........)))..)	chr4:100870766-100871003(-)$1	1	135	156	13.9616
.((((((........))))))	chr14:21484873-21485142(-)$1	1	132	153	13.5394
(.(((((........))))).	chr16:2564046-2564276(+)$1	1	178	199	14.4414
..(.(((........))).))	chr6:26056315-26056540(-)$1	1	95	116	14.8262
((((.((........)).)))	chr11:64013994-64014277(-)$1	1	233	254	13.6181
..(((((.........)))))	chr6:26056274-26056515(-)$1	1	135	156	8.6049
..(((((........)).)))	chr11:5290963-5291215(-)$1	1	58	79	12.0673
(((.(((........))).))	chr1:153617436-153617719(+)$1	1	178	199	14.4112
(((((((........))).))	chr1:110948859-110949101(-)$1	1	126	147	14.5003
..(((((........))))).	chr16:88782358-88782602(-)$1	1	31	52	13.7819
((((((.........))))))	chr7:100466353-100466588(+)$1	1	6	27	8.1206
(((((.(........))))))	chr15:79170449-79170688(+)$1	1	145	166	14.1400
((..(((.........)))))	chr2:98263787-98264006(+)$1	1	63	84	7.8941
(.(((((........)).)))	chr11:1977534-1977816(+)$1	1	37	58	13.6823
.((((((........))))))	chr17:26911569-26911858(-)$1	1	38	59	12.4676
.((..((........))..))	chr6:2948363-2948640(-)$1	1	166	187	13.2722
..(((((........))))).	chr4:110745473-110745681(+)$1	1	137	158	14.5460
.(((((.........))))).	chr17:73774687-73774904(-)$1	1	10	31	8.4811
(.(((((........))))).	chr1:24021128-24021350(+)$1	1	175	196	14.3805
...((((........)))).)	chr11:67379801-67380062(+)$1	1	18	39	11.9520
))(((((........))))).	chr3:197677929-197678149(+)$1	1	164	185	13.4576
((..(((........)))..)	chr20:2639049-2639343(-)$1	1	70	91	13.6822
(((.(((........))))))	chr11:64084708-64084934(-)$1	1	56	77	13.6560
.((.(((........))).))	chr11:5290679-5290931(-)$1	1	9	30	14.1083
(((.(((........))).))	chr1:228680815-228681045(+)$1	1	110	131	14.5213
(.(((((........))).))	chr2:98264358-98264605(+)$1	1	172	193	13.6852
.((..((........))..))	chr2:27255798-27256086(+)$1	1	213	234	13.2722
(((.(((........))).))	chr2:98263437-98263704(+)$1	1	199	220	14.5213
...((((........)))).)	chr19:54972294-54972542(+)$1	1	140	161	13.5868
(((.(((........))))))	chr17:45300288-45300524(+)$1	1	133	154	14.3333
..(((((........))))).	chr4:110745481-110745744(+)$1	1	129	150	14.5460
(.(((((........))))).	chrX:11316666-11316982(-)$1	1	90	111	14.2454
))(((((........))))).	chr19:49377746-49377981(+)$1	1	184	205	12.6469
((.((((........)))).)	chr15:91503029-91503313(+)$1	1	184	205	13.0514
.((((((........))))))	chr14:21484942-21485194(-)$1	1	184	205	13.5394
(((..((........))..))	chr1:24021054-24021277(+)$1	1	137	158	13.6015
.((((((........))))..	chr1:23695686-23695924(+)$1	1	45	66	13.2578
...((((........)))).)	chr19:14629044-14629306(-)$1	1	145	166	13.7570
(((((((........))))))	chr12:22215215-22215469(+)$1	1	126	147	13.9465
(((((((........))))))	chr12:56553661-56553951(+)$1	1	109	130	13.8452
(((((.(........).))))	chr7:128502827-128503099(+)$1	1	74	95	13.4932
(((((((........))))).	chr5:177577788-177578066(-)$1	1	82	103	12.5414
(.(((((........))))))	chr7:150647086-150647345(-)$1	1	168	189	14.2804
(((.(.(........).).))	chr5:180651175-180651438(+)$1	1	123	144	13.3931
((.((((........)))).)	chr19:50363438-50363689(+)$1	1	69	90	13.2291
.((..((........)))).)	chr1:228333110-228333374(+)$1	1	143	164	13.3168
..(((((........))))).	chr1:33820613-33820900(+)$1	1	198	219	13.0480
(.((.((........)).)).	chr19:4402635-4402911(+)$1	1	46	67	13.0851
).(((((........)).)))	chr12:22217955-22218212(+)$1	1	28	49	12.9236
((.((.(........).))))	chr11:62303322-62303625(-)$1	1	159	180	12.5450
((((.((........))))))	chr19:4037225-4037477(+)$1	1	33	54	13.5336

#PSSM
c : 0.15	! : 0.11	f : 0.11	g : 0.09	[ : 0.09	e : 0.07	d : 0.07	" : 0.07	: : 0.03	b : 0.03	' : 0.03	h : 0.01	F : 0.01	i : 0.01	G : 0.01	
f : 0.13	[ : 0.13	b : 0.11	e : 0.09	g : 0.09	c : 0.07	d : 0.07	" : 0.07	! : 0.05	: : 0.03	' : 0.03	F : 0.01	i : 0.01	G : 0.01	
e : 0.30	b : 0.13	f : 0.11	c : 0.11	g : 0.07	" : 0.05	[ : 0.05	! : 0.03	d : 0.03	a : 0.01	' : 0.01	i : 0.01	
e : 0.24	[ : 0.17	f : 0.11	! : 0.11	d : 0.11	g : 0.07	c : 0.05	b : 0.05	" : 0.01	i : 0.01	
c : 0.28	e : 0.24	d : 0.11	f : 0.07	! : 0.07	[ : 0.05	g : 0.05	" : 0.01	i : 0.01	a : 0.01	b : 0.01	
e : 0.24	c : 0.23	b : 0.21	d : 0.11	[ : 0.07	f : 0.05	g : 0.03	i : 0.01	
c : 0.23	e : 0.23	b : 0.21	d : 0.11	a : 0.07	f : 0.05	r : 0.03	g : 0.01	i : 0.01	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
e : 0.23	b : 0.21	c : 0.21	d : 0.11	a : 0.07	f : 0.05	r : 0.03	g : 0.03	i : 0.01	
e : 0.24	c : 0.23	b : 0.21	d : 0.11	f : 0.05	g : 0.05	] : 0.05	i : 0.01	
e : 0.24	c : 0.23	d : 0.11	f : 0.09	] : 0.09	g : 0.05	2 : 0.05	b : 0.03	3 : 0.01	i : 0.01	a : 0.01	
e : 0.24	] : 0.15	d : 0.13	f : 0.11	2 : 0.09	c : 0.09	g : 0.05	b : 0.05	3 : 0.01	i : 0.01	
e : 0.28	f : 0.13	c : 0.11	] : 0.11	b : 0.09	g : 0.07	d : 0.05	2 : 0.03	3 : 0.01	a : 0.01	4 : 0.01	i : 0.01	
f : 0.17	c : 0.15	] : 0.13	e : 0.11	b : 0.11	g : 0.07	d : 0.07	: : 0.05	5 : 0.01	= : 0.01	4 : 0.01	i : 0.01	2 : 0.01	

#score	687.2685151518624
#seq	52
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF637JMJ_LSM11_CDS_m1_run2.txt

#BEAR
###ggggggg!!eeeeeooooooeeeeegggggggggg	chr1:898627-898876(+)$1	249	169	207	13.1837
"""ccc!!dddd[addddnnnnndddd]a]dddd7777	chr16:89809199-89809445(-)$1	246	157	195	13.3417
%%============ddddnnnnndddd22=========	chr16:67862286-67862513(-)$1	227	37	75	17.3926
ffffff[ccc[ccc[ddddmmmmdddd]ccc]ccc]ff	chr22:32014198-32014559(+)$1	361	287	325	11.0612
dddd####a[ccc!!cccnnnnnccc333ccc]a333d	chrX:48681660-48681902(+)$1	242	8	46	16.6319
c"""eeeee[ccc[ddddmmmmdddd333ccceeeee2	chrX:70775041-70775256(+)$1	215	83	121	12.2226
!!bb####dddd!!ddddnnnnndddd22dddd4444b	chr16:28616993-28617284(-)$1	291	71	109	15.9402
eeeee!!ggggggg[cccnnnnncccggggggg22eee	chr10:101610273-101610510(+)$1	237	42	80	13.7268
!!==========####ddddllldddd22=========	chr17:37819000-37819312(+)$1	312	11	49	15.7621
c[ccc!!ffffffcccddddllldddd22ccc]fffff	chr8:27401931-27402194(+)$1	263	36	74	12.1336
[ccc"""ffffff"""ddddllldddd333ffffff33	chr9:111653465-111653747(-)$1	282	205	243	12.7495
:iiiiiiiiieeeee[bbnnnnnbbeeeee333iiiii	chr8:145737538-145737780(-)$1	242	190	228	12.7700
%%============ddddnnnnndddd22=========	chr16:67862313-67862562(-)$1	249	86	124	17.3926
[bb[dddd[eeeee!!bbnnnnnbbeeeee333dddd]	chr14:39818031-39818282(+)$1	251	7	45	11.5934
========="""eeeeeooooooeeeee333=======	chr17:30190229-30190636(-)$1	407	88	126	15.3025
"""ccc[cccccc!!cccnnnnnccc22ccc]ccc]cc	chr20:39800964-39801197(+)$1	233	7	45	16.1032
========="""cccrrrrrrrrrccc4444=======	chr11:381566-381812(+)$1	246	32	70	13.6371
%%%%%ccc[ccc"""cccnnnnnccccccccciiiiii	chr1:19415257-19415509(-)$1	252	145	183	13.4830
cddddeeeee####ddddooooooddddeeeee]dddd	chr17:46056100-46056356(+)$1	256	207	245	11.7822
ddd[ccc[cccccc[cccmmmmccc]ccc]ccc333cc	chr17:40268968-40269188(-)$1	220	40	78	11.5260
!bb####ddddddddddddmmmmdddd333dddd22dd	chr8:145655684-145656016(-)$1	332	182	220	11.2683
ccc[a"""eeeee[ddddooooooddddeeeee22a]c	chr6:31918907-31919121(+)$1	214	27	65	13.0496
b[ccc!!dddd"""ddddmmmmddddddddcccbb333	chr9:117071459-117071696(+)$1	237	154	192	11.6528
[dddd[eeeee"""cccooooooccc333eeeee22dd	chr9:116997823-116998032(+)$1	209	24	62	13.3303
:dddd!!ggggggg[cccnnnnncccggggggg22ddd	chr10:101610258-101610460(+)$1	202	57	95	13.1491
gggg[ccc[cccccc[bblllbb]ccc]cccccc]ggg	chr2:128186354-128186596(+)$1	242	153	191	11.1154
======####ddddrrrrrrrrrdddd22=========	chr9:117050652-117050879(+)$1	227	166	204	13.2980
g!!dddd"""bbeeeeeooooooeeeee]bb333dddd	chr19:39959309-39959586(+)$1	277	19	57	11.6405
b[dddd!!dddd"""cccooooooccc22dddd]dddd	chr17:80445758-80446081(+)$1	323	92	130	12.6481
"""iiiiiiiii[ddddooooooddddiiiiiiiii44	chr20:61471821-61472072(+)$1	251	142	180	15.4010
dd"""ccc!!a"""ddddnnnnndddd]a22ccc333d	chr9:117044499-117044710(+)$1	211	170	208	16.8861
fff[a[bb[bb"""ddddmmmmdddd333bb]bb]a]f	chr20:60884946-60885158(-)$1	212	34	72	11.4063
"""ccc####ddddrrrrrrrrrdddd22ccc333ccc	chr3:49721658-49721878(-)$1	220	172	210	13.1672
d!!eeeee==========mmmm==========333eee	chr19:10822874-10823242(+)$1	368	229	267	11.8522
cc[a[eeeee!!cccrrrrrrrrrccc22eeeee]a]c	chr14:51372034-51372300(-)$1	266	74	112	10.9951
ff"""==========[bblllbb==========4444f	chr16:684639-684898(-)$1	259	43	81	12.5655
eeeee!!eeeee####bbnnnnnbbeeeee22eeeee]	chr17:7128078-7128303(+)$1	225	153	191	11.5536
gg:iiiiiiiii[ccc[annnnna]ccc]iiiiiiiii	chr11:72539883-72540129(+)$1	246	194	232	14.2048
#ffffff!!bb[a[ddddnnnnnddddabb22ffffff	chr11:75147950-75148194(-)$1	244	150	188	12.8605
:ggggggg"""ccc[cccnnnnnccc4444ccc]gggg	chr16:1818218-1818444(+)$1	226	51	89	15.0174
"""cccdddd"""ccc[annnnna]ccc333dddd]cc	chr16:67862469-67862726(-)$1	257	98	136	14.8937
!!ccc"""eeeee[bboooooobbeeeee]ccc4444d	chr20:60885007-60885233(-)$1	226	80	118	11.7372
%%%%%%bbaccc!!ddddnnnnndddd333ccc]a]bb	chr9:117053091-117053297(+)$1	206	90	128	13.5367
cccffffff####eeeeennnnneeeee22ffffff]c	chr1:1231294-1231557(-)$1	263	166	204	12.6702
d[bb[ccc####eeeeeooooooeeeee]ccc]bb]dd	chr11:725710-725918(+)$1	208	115	153	12.1793
%%%%%%bbaccc!!ddddnnnnndddd333ccc]a]bb	chr9:117053060-117053286(+)$1	226	121	159	13.5367
eeee[ccc[a!!ffffffnnnnnffffff333accc22	chr9:117068699-117068907(+)$1	208	25	63	11.7695
bb!!ffffffccc!!cccooooooccc22ccc22ffff	chr3:184101265-184101488(+)$1	223	64	102	12.7246
======="""bb[bb[bbnnnnnbb]bbbb4444====	chr10:101594037-101594240(+)$1	203	55	93	12.6458
gggggg[bb$$$$$ddddnnnnndddd22bbggggggg	chr16:89806301-89806528(-)$1	227	70	108	14.6261
eeccc[ccc[bbccccccnnnnnccc]ccc22bb]ccc	chr19:18546327-18546580(-)$1	253	84	122	12.9227
===!!ccc!!eeeeecccnnnnnccc]eeeeeccc]==	chr9:117063861-117064078(+)$1	217	134	172	14.5475
f============[ddddnnnnndddd===========	chr8:145618094-145618372(+)$1	278	27	65	17.3711
DDddddggggggg!!cccnnnnnccc22ggggggg]dd	chr8:144644755-144645035(+)$1	280	171	209	12.5172

#otherMatches

#Seq PSSM
GCACAAGGCGAAGCUGCCUGGGUGUGGCCGCCUUGCAU	chr1:898627-898876(+)$1	249	169	207	13.1837
GCACUGCACUUUGCGAUUCAACAAGUCAGGGAAGAAAA	chr16:89809199-89809445(-)$1	246	157	195	13.3417
AUAAAUAUUUCCAGCAUCUUUGUGAUGAUCUGGAGGUA	chr16:67862286-67862513(-)$1	227	37	75	17.3926
UGAUUUUUUUUAUUUCAAAAUGCUUUGCAAUUAAAUGA	chr22:32014198-32014559(+)$1	361	287	325	11.0612
GAGGAGACUGUGGGAGGAGCCAUUCUGGACCAGACCAC	chrX:48681660-48681902(+)$1	242	8	46	16.6319
CAAGGCCUGAUAGAUCUGGCAAUAGACACCUACAGGCG	chrX:70775041-70775256(+)$1	215	83	121	12.2226
AAUGAGCGCUUCGAUGCGGACUAUGCGGAGAAGAUGGC	chr16:28616993-28617284(-)$1	291	71	109	15.9402
UGGUCUUUAGGAGCUAACACAUGGUUGCUUCUAUUGGC	chr10:101610273-101610510(+)$1	237	42	80	13.7268
CUGAGGGCAGGCCAUCAAGUGUGACUUCUGCCUGCCUU	chr17:37819000-37819312(+)$1	312	11	49	15.7621
GAGGUGAAUCAGAUCCUCAUUAAGUGGCUGGAUUCUGA	chr8:27401931-27402194(+)$1	263	36	74	12.1336
UGGCAGCCCAGCUUAACUUUACCAAAGACCAGCUGGUG	chr9:111653465-111653747(-)$1	282	205	243	12.7495
GUGUGCAGGCCCGGGAGCGCCAGGCCCUGGCCCGUCUG	chr8:145737538-145737780(-)$1	242	190	228	12.7700
AUAAAUAUUUCCAGCAUCUUUGUGAUGAUCUGGAGGUA	chr16:67862313-67862562(-)$1	249	86	124	17.3926
AUUGUUUCCAGUGGAUGCAAGAGGCCCAUUCUUGAGAA	chr14:39818031-39818282(+)$1	251	7	45	11.5934
UUUUUUUUAAAAGAUCUUUGGAUGGAUUAUAUGAAAGA	chr17:30190229-30190636(-)$1	407	88	126	15.3025
GCCUGGUGGGUGCAAAAAGAGUAUUUAGGUAUCCCCCC	chr20:39800964-39801197(+)$1	233	7	45	16.1032
ccccgGGGUCCUGACCACCUCUCCGUCCCCAACCCCGG	chr11:381566-381812(+)$1	246	32	70	13.6371
ACACCCUGACGUAAACAAGAAGAUUGACGCAGCCCGCA	chr1:19415257-19415509(-)$1	252	145	183	13.4830
GGGGGGAGGCAUGGCACCAGCACAGGUGGCUUCACUCC	chr17:46056100-46056356(+)$1	256	207	245	11.7822
GGGCGGGUCAUCGGUGGCAUCUGCUUCCGCAUGUUUCC	chr17:40268968-40269188(-)$1	220	40	78	11.5260
CCACCCUCCAAAAGCGGCCCCAAGGCCUUAGCUUCCUU	chr8:145655684-145656016(-)$1	332	182	220	11.2683
CCUGCACAGGAUAUCAAAGCUCUGUUUGUGUCUGAGGA	chr6:31918907-31919121(+)$1	214	27	65	13.0496
CAUCCACUGCCUUAACAUGACCGUGUGGCAGGAGGGCA	chr9:117071459-117071696(+)$1	237	154	192	11.6528
AUUGUAACCUUCUUUGCUGGUGUGUACUUAGGGUGAAC	chr9:116997823-116998032(+)$1	209	24	62	13.3303
UGGUCUUUAGGAGCUAACACAUGGUUGCUUCUAUUGGC	chr10:101610258-101610460(+)$1	202	57	95	13.1491
AGCUGGGCACCUUAGCGACCCUCCCUGCAGGGCUGGGC	chr2:128186354-128186596(+)$1	242	153	191	11.1154
GUGGCGUCCUAGGUGGAAUCUGAGCCUCCCGCUGCAUG	chr9:117050652-117050879(+)$1	227	166	204	13.2980
ACUGAGGUACAGCAAGAUUUUCUUCUUGACUCUCCCUU	chr19:39959309-39959586(+)$1	277	19	57	11.6405
CUGCGGCAGAUGGAAGGCAUUUACGCUGACAUCCCUGU	chr17:80445758-80446081(+)$1	323	92	130	12.6481
AGAUCCUGGGCUUCCAGGUGCCAUUGGGGCCCAGGGGA	chr20:61471821-61472072(+)$1	251	142	180	15.4010
UCCCUCCCCUCCCUGGACCCUCCGUCCUGUUGGGCCUG	chr9:117044499-117044710(+)$1	211	170	208	16.8861
CGGAUGACGGAGCAGGGGAGUUCUCCACGUCAGUGACC	chr20:60884946-60885158(-)$1	212	34	72	11.4063
GGGGCUAGAAAUGAACUAUUUUAUCAUGAAGCAGGCUA	chr3:49721658-49721878(-)$1	220	172	210	13.1672
CAUGGCUGUCCCUUGGGGGCCAUUCUGAGGGAAUAUGG	chr19:10822874-10823242(+)$1	368	229	267	11.8522
GGGAAAUUCUCCAGUGACCGAACAAUUAAAGAAUAUGC	chr14:51372034-51372300(-)$1	266	74	112	10.9951
GGCAGGUGGCUUGGGUGGCACCCCCCAGGCCAUGACUC	chr16:684639-684898(-)$1	259	43	81	12.5655
GAGGGCUGGAGGUGCAGGCCCAACCCCUCCUUCCCUCU	chr17:7128078-7128303(+)$1	225	153	191	11.5536
GCUGAUUCCAGGUUCUGACAUACUGGGACCCUGGAGUC	chr11:72539883-72540129(+)$1	246	194	232	14.2048
AGUGCUGCGGUGCGCCGGACCAGCCGGGACGUCAGCAU	chr11:75147950-75148194(-)$1	244	150	188	12.8605
CAGCAGUGACAGGGCGGCCAGCAGCUUCAUCCCCUACU	chr16:1818218-1818444(+)$1	226	51	89	15.0174
UUUAGCUUCUAUGCCAAGAUGCCCAUGGAGAGGAAGGC	chr16:67862469-67862726(-)$1	257	98	136	14.8937
CUUCCUACCCCGCCAGGUCCUGCUGCGGGCGGAUGACG	chr20:60885007-60885233(-)$1	226	80	118	11.7372
ACCCCCAGGAUUCAAGGUCAGAUACCUCUUAAUACACU	chr9:117053091-117053297(+)$1	206	90	128	13.5367
AGGUGGGGUACAGUCUGGAUCAGUCAGGGAGCCCCAGC	chr1:1231294-1231557(-)$1	263	166	204	12.6702
CGCCGGCGCCCCGUUCGAGCAGGUGAGCCCGCGGGGGU	chr11:725710-725918(+)$1	208	115	153	12.1793
ACCCCCAGGAUUCAAGGUCAGAUACCUCUUAAUACACU	chr9:117053060-117053286(+)$1	226	121	159	13.5367
GGGGGCUGUGGAGGCUUGAACCCCAGGCUGGACCAGGA	chr9:117068699-117068907(+)$1	208	25	63	11.7695
GCAGUGAGGUGGUGGCCAUGACACUGGAGACCAAGCCU	chr3:184101265-184101488(+)$1	223	64	102	12.7246
GGAAGACCUCAGUGAUGGUGUAUCUCUCCUAAUCGUUU	chr10:101594037-101594240(+)$1	203	55	93	12.6458
AGUGUUUAGAGAAGAGGAAGAUAUCCUGGCUGGCACUC	chr16:89806301-89806528(-)$1	227	70	108	14.6261
UGCACUCCAGGUGGUCAUCAAGUAUGUGCCGUACGUGG	chr19:18546327-18546580(-)$1	253	84	122	12.9227
CGGUAGGUAACUGAGUGCUGGGUGCAUCUUGGACUCCU	chr9:117063861-117064078(+)$1	217	134	172	14.5475
GGCAGGUGGGUGGCGGGGGCCUGCUCCCCACCCACCUG	chr8:145618094-145618372(+)$1	278	27	65	17.3711
ACCGGCCUGGGUCUUGCUGGACGAGUGUGGCCUAGAGC	chr8:144644755-144645035(+)$1	280	171	209	12.5172

#DB
...(((((((..(((((......)))))))))))))))	chr1:898627-898876(+)$1	1	169	207	13.1837
...(((..((((.(((((.....)))).).))))....	chr16:89809199-89809445(-)$1	1	157	195	13.3417
..((((((((((((((((.....))))..)))))))))	chr16:67862286-67862513(-)$1	1	37	75	17.3926
((((((.(((.(((.((((....)))).))).))).))	chr22:32014198-32014559(+)$1	1	287	325	11.0612
((((....(.(((..(((.....)))...))).)...)	chrX:48681660-48681902(+)$1	1	8	46	16.6319
(...(((((.(((.((((....))))...)))))))).	chrX:70775041-70775256(+)$1	1	83	121	12.2226
..((....((((..((((.....))))..))))....)	chr16:28616993-28617284(-)$1	1	71	109	15.9402
(((((..(((((((.(((.....))))))))))..)))	chr10:101610273-101610510(+)$1	1	42	80	13.7268
..((((((((((....((((...))))..)))))))))	chr17:37819000-37819312(+)$1	1	11	49	15.7621
(.(((..(((((((((((((...))))..))).)))))	chr8:27401931-27402194(+)$1	1	36	74	12.1336
.(((...((((((...((((...))))...))))))..	chr9:111653465-111653747(-)$1	1	205	243	12.7495
.((((((((((((((.((.....)))))))...)))))	chr8:145737538-145737780(-)$1	1	190	228	12.7700
..((((((((((((((((.....))))..)))))))))	chr16:67862313-67862562(-)$1	1	86	124	17.3926
.((.((((.(((((..((.....)))))))...)))).	chr14:39818031-39818282(+)$1	1	7	45	11.5934
(((((((((...(((((......)))))...)))))))	chr17:30190229-30190636(-)$1	1	88	126	15.3025
...(((.((((((..(((.....)))..))).))).))	chr20:39800964-39801197(+)$1	1	7	45	16.1032
(((((((((...(((.........)))....)))))))	chr11:381566-381812(+)$1	1	32	70	13.6371
.....(((.(((...(((.....)))))))))))))))	chr1:19415257-19415509(-)$1	1	145	183	13.4830
)(((((((((....((((......))))))))).))))	chr17:46056100-46056356(+)$1	1	207	245	11.7822
(((.(((.((((((.(((....))).))).)))...))	chr17:40268968-40269188(-)$1	1	40	78	11.5260
.((....((((((((((((....))))...))))..))	chr8:145655684-145656016(-)$1	1	182	220	11.2683
(((.(...(((((.((((......)))))))))..).)	chr6:31918907-31919121(+)$1	1	27	65	13.0496
(.(((..((((...((((....)))))))))))))...	chr9:117071459-117071696(+)$1	1	154	192	11.6528
.((((.(((((...(((......)))...)))))..))	chr9:116997823-116998032(+)$1	1	24	62	13.3303
.((((..(((((((.(((.....))))))))))..)))	chr10:101610258-101610460(+)$1	1	57	95	13.1491
((((.(((.((((((.((...)).))).)))))).)))	chr2:128186354-128186596(+)$1	1	153	191	11.1154
((((((....((((.........))))..)))))))))	chr9:117050652-117050879(+)$1	1	166	204	13.2980
(..((((...(((((((......))))).))...))))	chr19:39959309-39959586(+)$1	1	19	57	11.6405
(.((((..((((...(((......)))..)))).))))	chr17:80445758-80446081(+)$1	1	92	130	12.6481
...(((((((((.((((......)))))))))))))..	chr20:61471821-61472072(+)$1	1	142	180	15.4010
((...(((..(...((((.....)))).)..)))...)	chr9:117044499-117044710(+)$1	1	170	208	16.8861
(((.(.((.((...((((....))))...)).)).).)	chr20:60884946-60885158(-)$1	1	34	72	11.4063
...(((....((((.........))))..)))...)))	chr3:49721658-49721878(-)$1	1	172	210	13.1672
(..(((((((((((((((....))))))))))...)))	chr19:10822874-10823242(+)$1	1	229	267	11.8522
((.(.(((((..(((.........)))..))))).).)	chr14:51372034-51372300(-)$1	1	74	112	10.9951
((...((((((((((.((...))))))))))))....)	chr16:684639-684898(-)$1	1	43	81	12.5655
(((((..(((((....((.....)))))))..))))).	chr17:7128078-7128303(+)$1	1	153	191	11.5536
)).(((((((((.(((.(.....).))).)))))))))	chr11:72539883-72540129(+)$1	1	194	232	14.2048
.((((((..((.(.((((.....)))))))..))))))	chr11:75147950-75148194(-)$1	1	150	188	12.8605
.(((((((...(((.(((.....)))....))).))))	chr16:1818218-1818444(+)$1	1	51	89	15.0174
...(((((((...(((.(.....).)))...)))).))	chr16:67862469-67862726(-)$1	1	98	136	14.8937
..(((...(((((.((......))))))).)))....)	chr20:60885007-60885233(-)$1	1	80	118	11.7372
......((((((..((((.....))))...))).).))	chr9:117053091-117053297(+)$1	1	90	128	13.5367
(((((((((....(((((.....)))))..)))))).)	chr1:1231294-1231557(-)$1	1	166	204	12.6702
(.((.(((....(((((......))))).))).)).))	chr11:725710-725918(+)$1	1	115	153	12.1793
......((((((..((((.....))))...))).).))	chr9:117053060-117053286(+)$1	1	121	159	13.5367
((((.(((.(..((((((.....))))))...))))..	chr9:117068699-117068907(+)$1	1	25	63	11.7695
((..(((((((((..(((......)))..)))..))))	chr3:184101265-184101488(+)$1	1	64	102	12.7246
(((((((...((.((.((.....)).))))....))))	chr10:101594037-101594240(+)$1	1	55	93	12.6458
((((((.((.....((((.....))))..)))))))))	chr16:89806301-89806528(-)$1	1	70	108	14.6261
(((((.(((.((((((((.....))).)))..)).)))	chr19:18546327-18546580(-)$1	1	84	122	12.9227
(((..(((..((((((((.....))).)))))))).))	chr9:117063861-117064078(+)$1	1	134	172	14.5475
(((((((((((((.((((.....)))))))))))))))	chr8:145618094-145618372(+)$1	1	27	65	17.3711
(((((((((((((..(((.....)))..))))))).))	chr8:144644755-144645035(+)$1	1	171	209	12.5172

#PSSM
c : 0.11	" : 0.09	% : 0.09	d : 0.09	= : 0.09	f : 0.07	! : 0.07	e : 0.07	g : 0.07	[ : 0.05	: : 0.05	b : 0.05	# : 0.03	D : 0.01	
" : 0.11	d : 0.11	= : 0.11	% : 0.09	! : 0.09	f : 0.07	e : 0.07	[ : 0.07	c : 0.07	g : 0.07	b : 0.05	# : 0.01	i : 0.01	D : 0.01	
= : 0.16	" : 0.14	d : 0.12	c : 0.12	b : 0.07	f : 0.05	e : 0.05	% : 0.05	g : 0.05	! : 0.05	# : 0.01	i : 0.01	[ : 0.01	: : 0.01	
c : 0.16	= : 0.14	d : 0.12	g : 0.07	e : 0.07	[ : 0.07	f : 0.05	" : 0.05	i : 0.05	% : 0.05	b : 0.03	! : 0.03	# : 0.01	a : 0.01	
c : 0.16	= : 0.14	d : 0.12	f : 0.07	e : 0.07	[ : 0.07	g : 0.05	# : 0.05	" : 0.05	i : 0.05	% : 0.05	a : 0.03	! : 0.01	
c : 0.20	= : 0.16	! : 0.09	f : 0.07	e : 0.07	d : 0.07	g : 0.05	# : 0.05	" : 0.05	i : 0.05	[ : 0.05	% : 0.03	
= : 0.14	c : 0.14	! : 0.12	# : 0.09	e : 0.09	g : 0.05	[ : 0.05	" : 0.05	i : 0.05	d : 0.05	b : 0.05	f : 0.05	
c : 0.16	= : 0.12	e : 0.11	g : 0.09	# : 0.07	f : 0.07	d : 0.07	" : 0.07	b : 0.07	! : 0.05	i : 0.05	[ : 0.01	
= : 0.14	e : 0.12	d : 0.11	[ : 0.09	g : 0.07	c : 0.07	f : 0.07	a : 0.05	i : 0.05	# : 0.05	" : 0.05	! : 0.05	b : 0.01	
c : 0.12	e : 0.12	d : 0.11	= : 0.11	" : 0.09	g : 0.07	# : 0.07	[ : 0.05	f : 0.05	i : 0.05	! : 0.03	b : 0.03	a : 0.01	$ : 0.01	
c : 0.16	d : 0.12	e : 0.12	= : 0.11	b : 0.09	" : 0.07	! : 0.05	g : 0.05	# : 0.05	f : 0.03	i : 0.03	[ : 0.01	a : 0.01	$ : 0.01	
c : 0.20	" : 0.12	d : 0.11	= : 0.11	e : 0.11	! : 0.05	g : 0.05	# : 0.05	b : 0.05	f : 0.03	i : 0.03	[ : 0.01	$ : 0.01	
c : 0.20	e : 0.16	" : 0.12	= : 0.09	[ : 0.07	# : 0.07	! : 0.05	g : 0.05	f : 0.05	d : 0.05	a : 0.01	$ : 0.01	
c : 0.18	e : 0.14	! : 0.12	" : 0.12	[ : 0.09	= : 0.07	d : 0.07	# : 0.05	g : 0.03	a : 0.01	f : 0.01	b : 0.01	$ : 0.01	
d : 0.31	c : 0.14	e : 0.12	[ : 0.09	! : 0.09	" : 0.05	# : 0.03	r : 0.03	= : 0.03	b : 0.03	f : 0.01	
d : 0.33	c : 0.29	e : 0.09	[ : 0.07	r : 0.07	# : 0.03	" : 0.01	! : 0.01	= : 0.01	b : 0.01	f : 0.01	
d : 0.38	c : 0.24	b : 0.11	e : 0.09	r : 0.07	[ : 0.03	= : 0.01	o : 0.01	f : 0.01	
d : 0.37	c : 0.22	o : 0.12	b : 0.11	r : 0.07	a : 0.03	= : 0.01	e : 0.01	f : 0.01	
n : 0.49	o : 0.20	d : 0.09	m : 0.09	r : 0.07	l : 0.03	
n : 0.49	o : 0.20	m : 0.12	r : 0.07	d : 0.05	l : 0.03	
n : 0.49	o : 0.20	m : 0.12	l : 0.09	r : 0.07	
n : 0.49	o : 0.20	m : 0.12	r : 0.07	l : 0.05	b : 0.03	
n : 0.49	o : 0.18	r : 0.07	d : 0.05	l : 0.05	b : 0.05	m : 0.03	c : 0.01	= : 0.01	
d : 0.38	c : 0.20	e : 0.09	b : 0.09	o : 0.07	r : 0.03	= : 0.03	a : 0.03	] : 0.01	f : 0.01	
d : 0.42	c : 0.29	e : 0.11	b : 0.07	= : 0.03	] : 0.03	f : 0.01	
d : 0.42	c : 0.31	e : 0.16	] : 0.03	= : 0.03	f : 0.01	
d : 0.38	e : 0.16	c : 0.16	3 : 0.07	g : 0.03	2 : 0.03	= : 0.03	] : 0.03	4 : 0.01	f : 0.01	b : 0.01	
2 : 0.24	e : 0.18	3 : 0.14	c : 0.09	] : 0.07	d : 0.05	= : 0.05	g : 0.03	4 : 0.03	i : 0.01	a : 0.01	f : 0.01	b : 0.01	
2 : 0.22	3 : 0.18	e : 0.12	c : 0.11	g : 0.07	] : 0.05	= : 0.05	a : 0.03	4 : 0.03	b : 0.03	d : 0.01	i : 0.01	f : 0.01	
c : 0.20	e : 0.14	= : 0.12	3 : 0.12	b : 0.09	g : 0.07	] : 0.05	d : 0.05	4 : 0.03	i : 0.03	2 : 0.03	
c : 0.29	= : 0.12	3 : 0.09	e : 0.09	g : 0.07	d : 0.07	2 : 0.07	b : 0.05	f : 0.03	4 : 0.03	i : 0.03	
c : 0.27	= : 0.16	g : 0.09	d : 0.09	e : 0.09	3 : 0.07	] : 0.05	2 : 0.05	f : 0.03	i : 0.03	4 : 0.01	
c : 0.20	= : 0.14	e : 0.11	g : 0.09	d : 0.09	3 : 0.09	] : 0.05	f : 0.05	i : 0.05	b : 0.03	a : 0.01	2 : 0.01	4 : 0.01	
= : 0.12	c : 0.11	] : 0.09	d : 0.07	e : 0.07	4 : 0.07	2 : 0.07	f : 0.07	i : 0.07	3 : 0.07	b : 0.07	g : 0.05	a : 0.01	
= : 0.14	3 : 0.09	2 : 0.09	f : 0.09	d : 0.09	g : 0.07	c : 0.07	i : 0.07	] : 0.07	4 : 0.05	e : 0.03	b : 0.03	a : 0.03	7 : 0.01	
= : 0.14	] : 0.14	f : 0.09	d : 0.09	g : 0.07	3 : 0.07	e : 0.07	i : 0.07	4 : 0.05	a : 0.05	c : 0.05	2 : 0.03	7 : 0.01	
= : 0.16	d : 0.16	c : 0.09	g : 0.07	f : 0.07	3 : 0.07	e : 0.07	4 : 0.07	] : 0.07	i : 0.05	b : 0.03	7 : 0.01	2 : 0.01	
d : 0.20	= : 0.16	c : 0.14	f : 0.11	g : 0.07	b : 0.05	i : 0.05	2 : 0.03	e : 0.03	3 : 0.03	] : 0.03	7 : 0.01	4 : 0.01	

#score	722.4788118062298
#seq	54
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF944ISN_NOLC1_UTR_m2_run2.txt

#BEAR
ccc####bbddddmmmmdddd4444bb444	chr11:122929549-122929756(-)$1	207	138	168	10.3162
a!!ccc"""ddddnnnnndddd4444ccc2	chr4:152024897-152025126(+)$1	229	177	207	10.3361
c[ccc[bb!!ccclllccc22bb]ccc]cc	chr11:122929963-122930166(-)$1	203	70	100	13.8429
ddd[ccca!!ccclllccc22a]ccc]ddd	chr8:8750951-8751161(-)$1	210	138	168	12.4066
=========[ccclllccc333========	chr11:75111388-75111595(+)$1	207	8	38	14.6119
d==========oooooo=============	chr8:33370944-33371154(+)$1	210	35	65	12.3244
c[dddd[bb[cccmmmmccc]bb]ddddcc	chr5:180670226-180670438(-)$1	212	83	113	11.5528
ffff!!bb[ddddllldddd]bb22fffff	chr6:31803000-31803204(+)$1	204	67	97	11.5881
!ggggggg!!ccclllccc22ggggggg44	chr11:93466536-93466742(-)$1	206	145	175	13.0085
ff[a[dddd[cccmmmmccc]dddd]a]ff	chr4:74279232-74279447(+)$1	215	169	199	11.0486
ddd[dddd!!ccclllccc22dddd]dddd	chr11:122929525-122929742(-)$1	217	143	173	11.7247
======####cccnnnnnccc4444=====	chr4:74281884-74282098(+)$1	214	52	82	12.2541
d[dddd"""ddddmmmmdddd]dddddddd	chr11:62609020-62609227(-)$1	207	60	90	10.1747
ffff!!bb[ddddllldddd]bb22fffff	chr6:31802964-31803176(+)$1	212	103	133	11.5881
fffff[ccc[cccnnnnncccccc22ffff	chr17:8076716-8076921(-)$1	205	172	202	10.5607
iiiiiiiiiddddmmmmdddd22iiiiiii	chr15:25227082-25227299(+)$1	217	162	192	10.4151
!ggggggg!!ccclllccc22ggggggg44	chr11:93466531-93466736(-)$1	205	139	169	13.0085
fff[cccdddd[aooooooa]dddd4444c	chr19:49993180-49993385(+)$1	205	83	113	10.4859
fffff[ccc[cccnnnnncccccc22ffff	chr17:8076712-8076914(-)$1	202	165	195	10.5607
d[dddd"""ddddmmmmdddd]dddddddd	chr11:62609040-62609245(-)$1	205	78	108	10.1747
c[ccc[bb!!ccclllccc22bb]ccc]cc	chr11:122929983-122930187(-)$1	204	91	121	13.8429
d[dddd"""ddddmmmmdddd]dddddddd	chr11:62609082-62609296(-)$1	214	129	159	10.1747
cciiiiiiiii[ammmma]iiiiiiiii]c	chr19:51302223-51302450(-)$1	227	126	156	10.9476
[a####ddddcccmmmmccc]dddd22a]e	chr3:133495827-133496077(+)$1	250	131	161	10.2186
c[ccc[bb!!ccclllccc22bb]ccc]cc	chr11:122929967-122930183(-)$1	216	87	117	13.8429
========[ccclllccc333=========	chr11:75111395-75111603(+)$1	208	2	32	12.5259
ddd[dddd!!ccclllccc22dddd]dddd	chr11:122929556-122929776(-)$1	220	177	207	11.7247
d[dddd"""ddddmmmmdddd]dddddddd	chr11:62609027-62609233(-)$1	206	66	96	10.1747
c[ccc[bb!!ccclllccc22bb]ccc]cc	chr11:122929954-122930162(-)$1	208	66	96	13.8429
eeee!!bb!!ccclllccc22bb22eeeee	chr19:5140264-5140509(+)$1	245	11	41	12.2126
=========[ccclllccc333========	chr11:75111371-75111588(+)$1	217	25	55	14.6119
d[dddd"""ddddmmmmdddd]dddddddd	chr11:62609111-62609355(-)$1	244	188	218	10.1747
c[ccc[bb!!ccclllccc22bb]ccc]cc	chr11:122929949-122930154(-)$1	205	58	88	13.8429
:==========oooooo=============	chr8:33370968-33371172(+)$1	204	11	41	11.3618
gga[bbccc[cccmmmmcccccc]bb]a44	chr16:2012234-2012441(-)$1	207	74	104	10.5637
d==========oooooo=============	chr8:33370927-33371134(+)$1	207	52	82	12.3244
:==========oooooo=============	chr8:33370964-33371168(+)$1	204	15	45	11.3618
d==========oooooo=============	chr8:33370934-33371141(+)$1	207	45	75	12.3244
ccc####bbddddmmmmdddd4444bb444	chr11:122929542-122929749(-)$1	207	131	161	10.3162
fff[cccdddd[aooooooa]dddd4444c	chr19:49993176-49993380(+)$1	204	87	117	10.4859
ffff!!bb[ddddllldddd]bb22fffff	chr6:31802976-31803178(+)$1	202	91	121	11.5881
fffff[ccc[cccnnnnncccccc22ffff	chr17:8076690-8076892(-)$1	202	143	173	10.5607
fffff[ccc[cccnnnnncccccc22ffff	chr17:8076705-8076908(-)$1	203	159	189	10.5607
c[dddd[bb[cccmmmmccc]bb]ddddcc	chr5:180670238-180670479(-)$1	241	124	154	11.5528
=========[ccclllccc333========	chr11:75111343-75111571(+)$1	228	53	83	14.6119
:==========oooooo=============	chr8:33370960-33371164(+)$1	204	19	49	11.3618
gggggg"""ddddoooooodddd4444ggg	chr12:9243905-9244124(-)$1	219	131	161	11.0465
d[dddd"""ddddmmmmdddd]dddddddd	chr11:62609033-62609240(-)$1	207	73	103	10.1747
c!!ffffff[ccclllccc]ffffff]ccc	chr6:31804811-31805021(+)$1	210	56	86	10.7399
[ggggggg!!cccmmmmccc]ggggggga]	chr2:216229576-216229807(-)$1	231	74	104	12.0293
ccddddccc[cccmmmmccc]ccccccddd	chr17:7481240-7481473(+)$1	233	156	186	11.2260
ddddccc[cccooooooccc]ccc]dddd0	chr15:44057563-44057815(+)$1	252	28	58	9.9703
dddd!!gggggggmmmmggggggg22dddd	chr17:64224096-64224335(-)$1	239	129	159	9.5637
fff[cccdddd[aooooooa]dddd4444c	chr19:49993185-49993404(+)$1	219	78	108	10.4859
c[ccc[bb!!ccclllccc22bb]ccc]cc	chr11:122929941-122930149(-)$1	208	53	83	13.8429
ffff!!bb[ddddllldddd]bb22fffff	chr6:31802978-31803193(+)$1	215	89	119	11.5881
ffff!!bb[ddddllldddd]bb22fffff	chr6:31802993-31803196(+)$1	203	74	104	11.5881
fffff[ccc[cccnnnnncccccc22ffff	chr17:8076708-8076912(-)$1	204	163	193	10.5607
fff"""gggggggmmmmggggggg4444ff	chr11:62608993-62609220(-)$1	227	118	148	10.3860
c!!ffffff[ccclllccc]ffffff]ccc	chr6:31804762-31804988(+)$1	226	105	135	10.7399
cc"""gggggggnnnnnggggggg]ccc44	chr4:74277612-74277827(+)$1	215	36	66	9.6431
ee"""a[ddddccclllccc]dddd]a444	chr17:8076746-8076961(-)$1	215	12	42	10.9403

#otherMatches

#Seq PSSM
gaCCAUUCUUCCUUAGCAGGACCCUAGCAC	chr11:122929549-122929756(-)$1	207	138	168	10.3162
uaauggaaaaagcauaaggcuuggacucag	chr4:152024897-152025126(+)$1	229	177	207	10.3361
uuccaccaaaagcuuggcuaaugauggcaa	chr11:122929963-122930166(-)$1	203	70	100	13.8429
cccugcgcccgcagcaugcccgccgccggg	chr8:8750951-8751161(-)$1	210	138	168	12.4066
AGCAGUUUCUUGUUUUGCAUGUGGAACUGU	chr11:75111388-75111595(+)$1	207	8	38	14.6119
CAACUAUAAGAUgauccuuuuguaguucau	chr8:33370944-33371154(+)$1	210	35	65	12.3244
CAUCUGAGUGUCGGUGCUGAAAUCCAGAGG	chr5:180670226-180670438(-)$1	212	83	113	11.5528
GUGUGUCGCUGAUGCCAUCACCGCAGCGCU	chr6:31803000-31803204(+)$1	204	67	97	11.5881
AUGAAAAACCAGAUAAUCUACUUUUUUACC	chr11:93466536-93466742(-)$1	206	145	175	13.0085
UUAGGAGGAUAGCCUAGGCUUUUCUGUGGA	chr4:74279232-74279447(+)$1	215	169	199	11.0486
GACCCUAGCACUGUCACAGACCUGGAGUCC	chr11:122929525-122929742(-)$1	217	143	173	11.7247
GCAUAAUACUAUUAACACAAUUCUUUUAUG	chr4:74281884-74282098(+)$1	214	52	82	12.2541
gauggaauaggagcuugcuccguccacucc	chr11:62609020-62609227(-)$1	207	60	90	10.1747
GUGUGUCGCUGAUGCCAUCACCGCAGCGCU	chr6:31802964-31803176(+)$1	212	103	133	11.5881
UUGUGUUAUGCUGAUUAGCAGAUAUCCACA	chr17:8076716-8076921(-)$1	205	172	202	10.5607
UUUCAAGAUUUUCUGCAGAAAAUGUUUUGA	chr15:25227082-25227299(+)$1	217	162	192	10.4151
AUGAAAAACCAGAUAAUCUACUUUUUUACC	chr11:93466531-93466736(-)$1	205	139	169	13.0085
UCACGGCCAUGAGAUCAACCCCAUGCACCG	chr19:49993180-49993385(+)$1	205	83	113	10.4859
UUGUGUUAUGCUGAUUAGCAGAUAUCCACA	chr17:8076712-8076914(-)$1	202	165	195	10.5607
gauggaauaggagcuugcuccguccacucc	chr11:62609040-62609245(-)$1	205	78	108	10.1747
uuccaccaaaagcuuggcuaaugauggcaa	chr11:122929983-122930187(-)$1	204	91	121	13.8429
gauggaauaggagcuugcuccguccacucc	chr11:62609082-62609296(-)$1	214	129	159	10.1747
CCCGGGACCUUUGACAUCCGGGGUUCUGAG	chr19:51302223-51302450(-)$1	227	126	156	10.9476
GACCUUCUGUUCAGAGAUGACACAGUAUGU	chr3:133495827-133496077(+)$1	250	131	161	10.2186
uuccaccaaaagcuuggcuaaugauggcaa	chr11:122929967-122930183(-)$1	216	87	117	13.8429
GCAGUUUCUUGUUUUGCAUGUGGAACUGUU	chr11:75111395-75111603(+)$1	208	2	32	12.5259
GACCCUAGCACUGUCACAGACCUGGAGUCC	chr11:122929556-122929776(-)$1	220	177	207	11.7247
gauggaauaggagcuugcuccguccacucc	chr11:62609027-62609233(-)$1	206	66	96	10.1747
uuccaccaaaagcuuggcuaaugauggcaa	chr11:122929954-122930162(-)$1	208	66	96	13.8429
GGCCUGGAGGGGCUUGGCCGAUCAUGGCCU	chr19:5140264-5140509(+)$1	245	11	41	12.2126
AGCAGUUUCUUGUUUUGCAUGUGGAACUGU	chr11:75111371-75111588(+)$1	217	25	55	14.6119
gauggaauaggagcuugcuccguccacucc	chr11:62609111-62609355(-)$1	244	188	218	10.1747
uuccaccaaaagcuuggcuaaugauggcaa	chr11:122929949-122930154(-)$1	205	58	88	13.8429
CAACUAUAAGAUgauccuuuuguaguucau	chr8:33370968-33371172(+)$1	204	11	41	11.3618
AAUGGCCUCUCUGUUCCUAGGAGUGCGACA	chr16:2012234-2012441(-)$1	207	74	104	10.5637
CAACUAUAAGAUgauccuuuuguaguucau	chr8:33370927-33371134(+)$1	207	52	82	12.3244
CAACUAUAAGAUgauccuuuuguaguucau	chr8:33370964-33371168(+)$1	204	15	45	11.3618
CAACUAUAAGAUgauccuuuuguaguucau	chr8:33370934-33371141(+)$1	207	45	75	12.3244
gaCCAUUCUUCCUUAGCAGGACCCUAGCAC	chr11:122929542-122929749(-)$1	207	131	161	10.3162
UCACGGCCAUGAGAUCAACCCCAUGCACCG	chr19:49993176-49993380(+)$1	204	87	117	10.4859
GUGUGUCGCUGAUGCCAUCACCGCAGCGCU	chr6:31802976-31803178(+)$1	202	91	121	11.5881
UUGUGUUAUGCUGAUUAGCAGAUAUCCACA	chr17:8076690-8076892(-)$1	202	143	173	10.5607
UUGUGUUAUGCUGAUUAGCAGAUAUCCACA	chr17:8076705-8076908(-)$1	203	159	189	10.5607
CAUCUGAGUGUCGGUGCUGAAAUCCAGAGG	chr5:180670238-180670479(-)$1	241	124	154	11.5528
AGCAGUUUCUUGUUUUGCAUGUGGAACUGU	chr11:75111343-75111571(+)$1	228	53	83	14.6119
CAACUAUAAGAUgauccuuuuguaguucau	chr8:33370960-33371164(+)$1	204	19	49	11.3618
UCCCUGACACCAUCACCGAGUGGAAGGCAG	chr12:9243905-9244124(-)$1	219	131	161	11.0465
gauggaauaggagcuugcuccguccacucc	chr11:62609033-62609240(-)$1	207	73	103	10.1747
ACAGACUAGAGUCUCCGAUGCUGGUCAUGA	chr6:31804811-31805021(+)$1	210	56	86	10.7399
GCAUCUGUCUUGUGUCUAUAUGCAGAUGAG	chr2:216229576-216229807(-)$1	231	74	104	12.0293
GCUGCCCACAUGGAUGCCUAAGUGUCUUCC	chr17:7481240-7481473(+)$1	233	156	186	11.2260
UGGGAGACAGUUCUUCUGCUAUCUGCCUAC	chr15:44057563-44057815(+)$1	252	28	58	9.9703
GAGGAGGGAUGAGAAAGUUUAUCUGCCCUC	chr17:64224096-64224335(-)$1	239	129	159	9.5637
UCACGGCCAUGAGAUCAACCCCAUGCACCG	chr19:49993185-49993404(+)$1	219	78	108	10.4859
uuccaccaaaagcuuggcuaaugauggcaa	chr11:122929941-122930149(-)$1	208	53	83	13.8429
GUGUGUCGCUGAUGCCAUCACCGCAGCGCU	chr6:31802978-31803193(+)$1	215	89	119	11.5881
GUGUGUCGCUGAUGCCAUCACCGCAGCGCU	chr6:31802993-31803196(+)$1	203	74	104	11.5881
UUGUGUUAUGCUGAUUAGCAGAUAUCCACA	chr17:8076708-8076912(-)$1	204	163	193	10.5607
ggugcacUCUCCCUUCGGGGAGAGAACAAC	chr11:62608993-62609220(-)$1	227	118	148	10.3860
ACAGACUAGAGUCUCCGAUGCUGGUCAUGA	chr6:31804762-31804988(+)$1	226	105	135	10.7399
GCCUAGUGUUUUCAUAUAAAAUAUCGCAUG	chr4:74277612-74277827(+)$1	215	36	66	9.6431
GGAAUCUUUUUCACUGAGUGCAGAAUGUCG	chr17:8076746-8076961(-)$1	215	12	42	10.9403

#DB
(((....((((((....))))....))...	chr11:122929549-122929756(-)$1	1	138	168	10.3162
(..(((...((((.....))))....))).	chr4:152024897-152025126(+)$1	1	177	207	10.3361
(.(((.((..(((...)))..)).))).))	chr11:122929963-122930166(-)$1	1	70	100	13.8429
(((.((((..(((...)))..).))).)))	chr8:8750951-8751161(-)$1	1	138	168	12.4066
(((((((((.(((...)))...))))))))	chr11:75111388-75111595(+)$1	1	8	38	14.6119
)((((((((((......))))))))))(((	chr8:33370944-33371154(+)$1	1	35	65	12.3244
(.((((.((.(((....))).)).))))))	chr5:180670226-180670438(-)$1	1	83	113	11.5528
((((..((.((((...)))).))..)))))	chr6:31803000-31803204(+)$1	1	67	97	11.5881
.(((((((..(((...)))..)))))))..	chr11:93466536-93466742(-)$1	1	145	175	13.0085
((.(.((((.(((....))).)))).).))	chr4:74279232-74279447(+)$1	1	169	199	11.0486
(((.((((..(((...)))..)))).))))	chr11:122929525-122929742(-)$1	1	143	173	11.7247
((((((....(((.....)))....)))))	chr4:74281884-74282098(+)$1	1	52	82	12.2541
(.((((...((((....)))).))))))))	chr11:62609020-62609227(-)$1	1	60	90	10.1747
((((..((.((((...)))).))..)))))	chr6:31802964-31803176(+)$1	1	103	133	11.5881
(((((.(((.(((.....))))))..))))	chr17:8076716-8076921(-)$1	1	172	202	10.5607
(((((((((((((....))))..)))))))	chr15:25227082-25227299(+)$1	1	162	192	10.4151
.(((((((..(((...)))..)))))))..	chr11:93466531-93466736(-)$1	1	139	169	13.0085
(((.(((((((.(......).))))....)	chr19:49993180-49993385(+)$1	1	83	113	10.4859
(((((.(((.(((.....))))))..))))	chr17:8076712-8076914(-)$1	1	165	195	10.5607
(.((((...((((....)))).))))))))	chr11:62609040-62609245(-)$1	1	78	108	10.1747
(.(((.((..(((...)))..)).))).))	chr11:122929983-122930187(-)$1	1	91	121	13.8429
(.((((...((((....)))).))))))))	chr11:62609082-62609296(-)$1	1	129	159	10.1747
(((((((((((.(....).))))))))).)	chr19:51302223-51302450(-)$1	1	126	156	10.9476
.(....(((((((....))).))))..).)	chr3:133495827-133496077(+)$1	1	131	161	10.2186
(.(((.((..(((...)))..)).))).))	chr11:122929967-122930183(-)$1	1	87	117	13.8429
((((((((.(((...)))...)))))))))	chr11:75111395-75111603(+)$1	1	2	32	12.5259
(((.((((..(((...)))..)))).))))	chr11:122929556-122929776(-)$1	1	177	207	11.7247
(.((((...((((....)))).))))))))	chr11:62609027-62609233(-)$1	1	66	96	10.1747
(.(((.((..(((...)))..)).))).))	chr11:122929954-122930162(-)$1	1	66	96	13.8429
((((..((..(((...)))..))..)))))	chr19:5140264-5140509(+)$1	1	11	41	12.2126
(((((((((.(((...)))...))))))))	chr11:75111371-75111588(+)$1	1	25	55	14.6119
(.((((...((((....)))).))))))))	chr11:62609111-62609355(-)$1	1	188	218	10.1747
(.(((.((..(((...)))..)).))).))	chr11:122929949-122930154(-)$1	1	58	88	13.8429
.((((((((((......))))))))))(((	chr8:33370968-33371172(+)$1	1	11	41	11.3618
(((.(((((.(((....)))))).)).)..	chr16:2012234-2012441(-)$1	1	74	104	10.5637
)((((((((((......))))))))))(((	chr8:33370927-33371134(+)$1	1	52	82	12.3244
.((((((((((......))))))))))(((	chr8:33370964-33371168(+)$1	1	15	45	11.3618
)((((((((((......))))))))))(((	chr8:33370934-33371141(+)$1	1	45	75	12.3244
(((....((((((....))))....))...	chr11:122929542-122929749(-)$1	1	131	161	10.3162
(((.(((((((.(......).))))....)	chr19:49993176-49993380(+)$1	1	87	117	10.4859
((((..((.((((...)))).))..)))))	chr6:31802976-31803178(+)$1	1	91	121	11.5881
(((((.(((.(((.....))))))..))))	chr17:8076690-8076892(-)$1	1	143	173	10.5607
(((((.(((.(((.....))))))..))))	chr17:8076705-8076908(-)$1	1	159	189	10.5607
(.((((.((.(((....))).)).))))))	chr5:180670238-180670479(-)$1	1	124	154	11.5528
(((((((((.(((...)))...))))))))	chr11:75111343-75111571(+)$1	1	53	83	14.6119
.((((((((((......))))))))))(((	chr8:33370960-33371164(+)$1	1	19	49	11.3618
((((((...((((......))))....)))	chr12:9243905-9244124(-)$1	1	131	161	11.0465
(.((((...((((....)))).))))))))	chr11:62609033-62609240(-)$1	1	73	103	10.1747
(..((((((.(((...))).)))))).)))	chr6:31804811-31805021(+)$1	1	56	86	10.7399
.(((((((..(((....))).)))))))).	chr2:216229576-216229807(-)$1	1	74	104	12.0293
))))))(((.(((....))).)))((((((	chr17:7481240-7481473(+)$1	1	156	186	11.2260
(((((((.(((......))).))).)))).	chr15:44057563-44057815(+)$1	1	28	58	9.9703
((((..(((((((....)))))))..))))	chr17:64224096-64224335(-)$1	1	129	159	9.5637
(((.(((((((.(......).))))....)	chr19:49993185-49993404(+)$1	1	78	108	10.4859
(.(((.((..(((...)))..)).))).))	chr11:122929941-122930149(-)$1	1	53	83	13.8429
((((..((.((((...)))).))..)))))	chr6:31802978-31803193(+)$1	1	89	119	11.5881
((((..((.((((...)))).))..)))))	chr6:31802993-31803196(+)$1	1	74	104	11.5881
(((((.(((.(((.....))))))..))))	chr17:8076708-8076912(-)$1	1	163	193	10.5607
(((...(((((((....)))))))....))	chr11:62608993-62609220(-)$1	1	118	148	10.3860
(..((((((.(((...))).)))))).)))	chr6:31804762-31804988(+)$1	1	105	135	10.7399
((...(((((((.....))))))).)))..	chr4:74277612-74277827(+)$1	1	36	66	9.6431
((...(.(((((((...))).)))).)...	chr17:8076746-8076961(-)$1	1	12	42	10.9403

#PSSM
c : 0.24	f : 0.24	d : 0.22	= : 0.08	: : 0.04	! : 0.03	[ : 0.03	e : 0.03	g : 0.03	a : 0.01	i : 0.01	
f : 0.24	[ : 0.22	= : 0.17	c : 0.08	d : 0.08	g : 0.08	! : 0.04	e : 0.03	i : 0.01	a : 0.01	
d : 0.22	f : 0.22	= : 0.17	c : 0.12	g : 0.06	! : 0.04	i : 0.03	" : 0.03	[ : 0.01	# : 0.01	e : 0.01	a : 0.01	
f : 0.19	= : 0.17	d : 0.17	c : 0.11	[ : 0.11	g : 0.06	# : 0.04	" : 0.04	i : 0.03	a : 0.01	e : 0.01	
c : 0.19	= : 0.17	d : 0.17	! : 0.11	f : 0.11	g : 0.06	# : 0.04	" : 0.04	i : 0.03	[ : 0.01	b : 0.01	
d : 0.19	[ : 0.17	= : 0.17	! : 0.11	c : 0.09	g : 0.08	# : 0.04	i : 0.03	f : 0.03	b : 0.01	" : 0.01	a : 0.01	
b : 0.19	c : 0.19	= : 0.16	" : 0.12	g : 0.09	d : 0.06	# : 0.04	[ : 0.04	i : 0.03	f : 0.03	
b : 0.25	= : 0.16	" : 0.12	d : 0.12	c : 0.11	g : 0.09	i : 0.03	f : 0.03	a : 0.01	# : 0.01	[ : 0.01	
! : 0.20	= : 0.14	" : 0.12	c : 0.12	[ : 0.09	d : 0.09	b : 0.06	g : 0.04	i : 0.03	f : 0.03	# : 0.01	
d : 0.33	[ : 0.24	! : 0.20	= : 0.09	g : 0.04	c : 0.03	# : 0.01	i : 0.01	
c : 0.51	d : 0.32	= : 0.09	g : 0.04	i : 0.01	
c : 0.51	d : 0.25	o : 0.11	[ : 0.06	g : 0.04	
c : 0.49	d : 0.25	o : 0.11	a : 0.06	g : 0.03	l : 0.01	n : 0.01	
l : 0.37	m : 0.30	o : 0.17	n : 0.12	c : 0.01	
l : 0.38	m : 0.30	o : 0.17	n : 0.12	
l : 0.37	m : 0.30	o : 0.17	n : 0.12	c : 0.01	
m : 0.30	c : 0.29	o : 0.17	n : 0.12	d : 0.08	l : 0.01	
c : 0.43	d : 0.22	n : 0.11	= : 0.09	o : 0.06	g : 0.04	a : 0.01	
c : 0.51	d : 0.24	= : 0.09	o : 0.06	g : 0.04	] : 0.01	3 : 0.01	
d : 0.25	c : 0.24	2 : 0.19	= : 0.09	3 : 0.06	a : 0.04	g : 0.04	] : 0.03	i : 0.01	
] : 0.25	2 : 0.19	d : 0.17	c : 0.11	= : 0.09	3 : 0.06	g : 0.04	f : 0.03	i : 0.01	
b : 0.22	d : 0.16	c : 0.12	= : 0.11	g : 0.09	] : 0.09	4 : 0.04	3 : 0.04	f : 0.03	a : 0.01	2 : 0.01	i : 0.01	
d : 0.24	b : 0.22	= : 0.16	c : 0.12	g : 0.09	4 : 0.06	f : 0.03	] : 0.01	2 : 0.01	i : 0.01	
d : 0.22	= : 0.16	] : 0.14	c : 0.12	2 : 0.09	g : 0.09	4 : 0.08	i : 0.03	f : 0.03	
d : 0.25	2 : 0.19	= : 0.16	c : 0.12	4 : 0.09	g : 0.04	i : 0.03	f : 0.03	] : 0.03	b : 0.01	
= : 0.17	c : 0.14	d : 0.14	f : 0.11	2 : 0.11	4 : 0.09	] : 0.06	b : 0.04	g : 0.04	i : 0.03	e : 0.01	
d : 0.19	= : 0.17	f : 0.16	c : 0.14	4 : 0.08	] : 0.06	g : 0.04	b : 0.03	a : 0.03	i : 0.03	2 : 0.01	e : 0.01	
d : 0.22	= : 0.17	f : 0.16	4 : 0.11	] : 0.11	c : 0.06	g : 0.06	i : 0.03	a : 0.03	e : 0.01	
d : 0.19	f : 0.19	c : 0.17	= : 0.17	4 : 0.16	] : 0.03	i : 0.01	e : 0.01	g : 0.01	a : 0.01	
c : 0.22	f : 0.19	d : 0.17	= : 0.17	4 : 0.11	e : 0.03	2 : 0.01	i : 0.01	g : 0.01	] : 0.01	0 : 0.01	

#score	713.6235737726145
#seq	62
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF793EJK_ZNF800_transcript_m3_run1.txt

#BEAR
$$$$$eeeeeqqqqqqqqeeeee22cc	chr7:75610377-75610584(+)$1	207	23	50	15.5408
iiiiiiicccqqqqqqqqccc22iiii	chr17:73034885-73035239(-)$1	354	80	107	17.6880
bb[a[eeeeeqqqqqqqqeeeeea]bb	chr11:65835605-65835854(+)$1	249	180	207	15.4975
ggggggg[bbqqqqqqqqbbggggggg	chrX:76937046-76937331(-)$1	285	198	225	16.6877
##eeeee[bbqqqqqqqqbb]eeeee5	chr16:18845608-18845869(-)$1	261	73	100	15.3761
ffff####bbqqqqqqqqbb22fffff	chr3:50095208-50095515(+)$1	307	214	241	15.4699
##ccc!!cccqqqqqqqqccc333ccc	chr16:18856648-18856910(-)$1	262	139	166	18.2977
$$$$ffffffqqqqqqqqffffff333	chr20:8737672-8737926(+)$1	254	64	91	15.7730
f!!gggggggqqqqqqqqgggggggff	chr22:36694864-36695086(-)$1	222	167	194	16.7356
ddd"""ddddqqqqqqqqdddd22ddd	chr12:104340998-104341254(+)$1	256	8	35	15.5860
$$ccc[ddddqqqqqqqqdddd]ccc5	chr1:19471246-19471494(-)$1	248	74	101	15.3516
ffff"""cccqqqqqqqqccc4444ff	chr22:36681178-36681472(-)$1	294	56	83	17.2494
ggg!!eeeeeqqqqqqqqeeeee4444	chr1:234582478-234582763(-)$1	285	212	239	16.8193
ddd[ffffffqqqqqqqqffffff333	chr2:21225637-21225878(-)$1	241	135	162	15.9513
ddddffffffqqqqqqqqffffff]dd	chr17:62500106-62500326(-)$1	220	136	163	14.9922
hh!!ffffffqqqqqqqqffffff333	chr12:9231760-9231969(-)$1	209	22	49	16.0753
!!bb[eeeeeqqqqqqqqeeeeebbbb	chr1:19465475-19465718(-)$1	243	40	67	14.9131
:iiiiiiiiiqqqqqqqqiiiiiiiii	chr14:31604193-31604498(-)$1	305	200	227	16.1479
ff####ddddqqqqqqqqdddd22fff	chr3:52830538-52830757(+)$1	219	6	33	15.9382
gggg####bbqqqqqqqqbb333gggg	chr4:107252754-107253067(+)$1	313	166	193	17.1013
"eeeee[cccqqqqqqqqccceeeeec	chrX:70513975-70514221(+)$1	246	131	158	16.9976
g"""ffffffqqqqqqqqffffff22g	chr9:71831235-71831477(+)$1	242	139	166	15.8516
gggggg[cccqqqqqqqqccc22gggg	chr1:146680370-146680711(-)$1	341	165	192	17.7111
eeeccc[cccqqqqqqqqccc333ccc	chr1:21091769-21092085(-)$1	316	113	140	17.8393
ee[ccc[cccqqqqqqqqccc]ccc]e	chr20:39751843-39752076(+)$1	233	162	189	17.1937
h[gggggggaqqqqqqqqa]ggggggg	chr7:155465460-155465711(+)$1	251	95	122	16.4401
ddd!!eeeeeqqqqqqqqeeeee4444	chr8:124346082-124346356(-)$1	274	156	183	16.3536
======[cccqqqqqqqqccc333===	chr3:194161939-194162188(-)$1	249	130	157	18.8092
ffffccc[bbqqqqqqqqbb]ccc:cc	chrX:70517580-70517835(+)$1	255	143	170	14.7670
ddd[bb[cccqqqqqqqqccc22bb]d	chr6:144800959-144801214(+)$1	255	5	32	15.9382
!a####ddddqqqqqqqqdddd333a2	chr3:195792308-195792565(-)$1	257	116	143	17.0036
ceeeee[cccqqqqqqqqccc]eeeee	chr2:71650029-71650288(+)$1	259	166	193	16.8498
ii!!ffffffqqqqqqqqffffffiii	chr11:70820950-70821199(-)$1	249	139	166	16.2637
#ffffff[bbqqqqqqqqbbffffff]	chr17:8395676-8395929(-)$1	253	106	133	15.5636
DDdddd[cccqqqqqqqqccc333ddd	chr19:15367680-15367933(-)$1	253	175	202	14.6518
"eeeee[cccqqqqqqqqccceeeeec	chrX:70514096-70514340(+)$1	244	10	37	16.9976
[iiiiiiiiiqqqqqqqqiiiiiiiii	chr1:23637590-23637877(-)$1	287	3	30	17.1766
f"""ccc[bbqqqqqqqqbb]ccc444	chr12:53428292-53428600(+)$1	308	187	214	16.5720
[iiiiiiiiiqqqqqqqqiiiiiiiii	chrX:76936911-76937186(-)$1	275	44	71	17.1766
!ccc[eeeeeqqqqqqqqeeeee]ccc	chr6:144843177-144843407(+)$1	230	175	202	16.4817
cc[ddddcccqqqqqqqqccc]dddd]	chr10:93702153-93702413(+)$1	260	225	252	15.9078
ccc"""ddddqqqqqqqqdddd333cc	chrY:15028765-15029063(+)$1	298	1	28	17.1457
b[ccc!!cccqqqqqqqqccc22ccc]	chr9:37588634-37589030(-)$1	396	361	388	17.4488
ggg"""ddddqqqqqqqqdddd]gggg	chr7:94292999-94293293(+)$1	294	213	240	16.6761
eccc"""cccqqqqqqqqccc4444cc	chr5:139838720-139839012(+)$1	292	219	246	17.7142
!!accc!!bbqqqqqqqqbb22ccc]a	chr8:48826367-48826631(-)$1	264	117	144	16.4834
:::gggggggqqqqqqqqgggggggcc	chr2:173450910-173451216(+)$1	306	214	241	13.9178
:eeeee[cccqqqqqqqqccc]eeeee	chr11:68334381-68334624(+)$1	243	89	116	15.9995
b[a!!eeeeeqqqqqqqqeeeeea]bb	chrX:108904724-108904974(-)$1	250	171	198	15.9861
:eeeee[cccqqqqqqqqccceeeee:	chr7:72892527-72892804(-)$1	277	1	28	15.0658
fffff[ddddqqqqqqqqdddd22fff	chr1:43220641-43220940(-)$1	299	1	28	15.4351
f"""ccc[bbqqqqqqqqbb]ccc]ff	chr19:14200924-14201194(-)$1	270	173	200	16.3614
gggggg[cccqqqqqqqqcccgggggg	chr17:41570083-41570379(+)$1	296	254	281	17.6099
[bb[bb[cccqqqqqqqqccc]bb]bb	chr7:134625783-134626053(+)$1	270	47	74	15.7336
!eeeee!!bbqqqqqqqqbb22eeeee	chr4:73967992-73968204(-)$1	212	75	102	15.9232
[ccc[eeeeeqqqqqqqqeeeee]ccc	chr7:155537661-155537999(+)$1	338	272	299	16.4507
==========qqqqqqqq=========	chr18:55280731-55280999(-)$1	268	44	71	17.6867
eeegggggggqqqqqqqqggggggg55	chr2:54864829-54865036(+)$1	207	71	98	15.0836
eeeea[ddddqqqqqqqqdddd]a]ee	chr2:198264994-198265250(-)$1	256	20	47	15.9197
=======[bbqqqqqqqqbb=======	chr3:148904365-148904611(-)$1	246	123	150	17.4279
eeeee[ddddqqqqqqqqdddd333ee	chr1:45242245-45242494(+)$1	249	134	161	16.3275

#otherMatches

#Seq PSSM
CAAUGCCAUGGGCAAGUACGUGGACAA	chr7:75610377-75610584(+)$1	207	23	50	15.5408
GAUGGAGAAGAUGAAGAACUUAAUUCC	chr17:73034885-73035239(-)$1	354	80	107	17.6880
GCACGCUGCCAAACAGAAGGUAGGCGC	chr11:65835605-65835854(+)$1	249	180	207	15.4975
UUCUGAUAUAGAAGAUGAUGAUCAGAA	chrX:76937046-76937331(-)$1	285	198	225	16.6877
UUUAAGUUUCACUGUACAGAUAUUUAU	chr16:18845608-18845869(-)$1	261	73	100	15.3761
UGGAGAGAGCAAAAGUAAGUAGUUUGU	chr3:50095208-50095515(+)$1	307	214	241	15.4699
AGCUGGAUUCCAUUUAAAGAGGUACAG	chr16:18856648-18856910(-)$1	262	139	166	18.2977
AACGACUCCAGCAGAAAAUGGGGUGAA	chr20:8737672-8737926(+)$1	254	64	91	15.7730
AAGGGCUGGCGGUCAGGGGCCGGCCUG	chr22:36694864-36695086(-)$1	222	167	194	16.7356
AUUAAUUAUGAUUUUAUACAUAUAAAU	chr12:104340998-104341254(+)$1	256	8	35	15.5860
AUGUUUGUCUCUCCUUUAGGACUAACU	chr1:19471246-19471494(-)$1	248	74	101	15.3516
GGCCCCAGCCCUCCCCAAGGUCACUGG	chr22:36681178-36681472(-)$1	294	56	83	17.2494
AUGGUGAGGAUAAGUUGUUUCUCUUGG	chr1:234582478-234582763(-)$1	285	212	239	16.8193
UGAAAGUCAAGCAUCUGAUUGACUCAC	chr2:21225637-21225878(-)$1	241	135	162	15.9513
ACUGCUAUUCAAGCUCAGGGAUGGCCA	chr17:62500106-62500326(-)$1	220	136	163	14.9922
UCGUUAAUCUUCCUUUCCAGGUUACCA	chr12:9231760-9231969(-)$1	209	22	49	16.0753
CAGAUGGUUCUACCCUUCGGACCUCUC	chr1:19465475-19465718(-)$1	243	40	67	14.9131
CGUGAUAAUUCAGCUUUAAAUUGUCAU	chr14:31604193-31604498(-)$1	305	200	227	16.1479
ACCUCCCGUUUUGCUCACAAUGUUGUC	chr3:52830538-52830757(+)$1	219	6	33	15.9382
AUCAUAACUGCUAGAAAACACCCUGAU	chr4:107252754-107253067(+)$1	313	166	193	17.1013
GUGGAGCUGGACAAUAUGCCACUCCGU	chrX:70513975-70514221(+)$1	246	131	158	16.9976
CUCCAGUGAGUGUCCUCCCUCGCUCCG	chr9:71831235-71831477(+)$1	242	139	166	15.8516
AUGUGUUGUUCUCUUCUCGACUUACAC	chr1:146680370-146680711(-)$1	341	165	192	17.7111
UCCCACUGGCCUUUACUCGCCUUUGUG	chr1:21091769-21092085(-)$1	316	113	140	17.8393
UCACUUGCCCUCGUGCCUGGGGGAGAG	chr20:39751843-39752076(+)$1	233	162	189	17.1937
CCAAGUGAACUUGAAGAUGAUUUACUU	chr7:155465460-155465711(+)$1	251	95	122	16.4401
UCUUGUUGGUGAUAAAAGAUCAGACCC	chr8:124346082-124346356(-)$1	274	156	183	16.3536
GUUUGAGGCUAUUGGAUGGGUAAGUCA	chr3:194161939-194162188(-)$1	249	130	157	18.8092
GGCGGCAGCAAGAAGAAAUGAUGCGGC	chrX:70517580-70517835(+)$1	255	143	170	14.7670
UAGGUUGUCUGAAAGUCAAGAAAAAGC	chr6:144800959-144801214(+)$1	255	5	32	15.9382
UCUGACUGGAAAACAGACUCUACAUGU	chr3:195792308-195792565(-)$1	257	116	143	17.0036
UUCAGUCAGUAUUGAACAAUUCACUGA	chr2:71650029-71650288(+)$1	259	166	193	16.8498
UCGCUUGGUGGAGAAGAUCACCAAGAU	chr11:70820950-70821199(-)$1	249	139	166	16.2637
UAGCAGAAGAGAAGAGCAUCUCUGCUC	chr17:8395676-8395929(-)$1	253	106	133	15.5636
CUCCAUUCUUAAUCCCCAGAGUCCGUG	chr19:15367680-15367933(-)$1	253	175	202	14.6518
GUGGAGCUGGACAAUAUGCCACUCCGU	chrX:70514096-70514340(+)$1	244	10	37	16.9976
UAUAUAAAACAAAAUACAGUUUUAUAU	chr1:23637590-23637877(-)$1	287	3	30	17.1766
CACAUCUAGCAGAAGUAAGUCAGACCA	chr12:53428292-53428600(+)$1	308	187	214	16.5720
CUCAUCUUCUUCUGAUAUAGAAGAUGA	chrX:76936911-76937186(-)$1	275	44	71	17.1766
AGUAGAGGAAGAAAUUUGUUCUUGUGC	chr6:144843177-144843407(+)$1	230	175	202	16.4817
GUCACUGUGGUAUGCUGUUCAUUAGUC	chr10:93702153-93702413(+)$1	260	225	252	15.9078
GAAUACUCCACUACUUUAUGGAAACUU	chrY:15028765-15029063(+)$1	298	1	28	17.1457
CUGUGACGUUUGGCCUCUGACAAUACU	chr9:37588634-37589030(-)$1	396	361	388	17.4488
UGUCCGUGUCUGCUUCGUGACAAGCAU	chr7:94292999-94293293(+)$1	294	213	240	16.6761
GGUAUGUGGCUUUAAGAUGCCUUAUUg	chr5:139838720-139839012(+)$1	292	219	246	17.7142
UUCCUGCCUCGAGUCACAGAAUUAGCG	chr8:48826367-48826631(-)$1	264	117	144	16.4834
UCAAGAAAUAAUGAAGUGUGUUUCUGU	chr2:173450910-173451216(+)$1	306	214	241	13.9178
UUCUUCUUCAGAAAAGUGUGAUGAAGA	chr11:68334381-68334624(+)$1	243	89	116	15.9995
AAGAAUUGUCCACUUAUUGACAACAUC	chrX:108904724-108904974(-)$1	250	171	198	15.9861
UCACCACUAAAUCCUAAGUUAUGGUGU	chr7:72892527-72892804(-)$1	277	1	28	15.0658
GAAGAUUAAGUAGAUCAUCUUACCUUU	chr1:43220641-43220940(-)$1	299	1	28	15.4351
CCGAGCUCGAGAAACUGAUCCAGCAGC	chr19:14200924-14201194(-)$1	270	173	200	16.3614
GGUGACAUUUAUAAUGGCAAAGUUACC	chr17:41570083-41570379(+)$1	296	254	281	17.6099
ACUGUUGGUUAGAUCAAAGAUGAAAAG	chr7:134625783-134626053(+)$1	270	47	74	15.7336
CAAGCUGCUCAAGAAAAAGAAAAGCUU	chr4:73967992-73968204(-)$1	212	75	102	15.9232
AGACUUCUUGUUAAAAACCAGGAUGUC	chr7:155537661-155537999(+)$1	338	272	299	16.4507
AAAUGACAUUAUUGAACAAAUGUUGUU	chr18:55280731-55280999(-)$1	268	44	71	17.6867
CAACAGGGAUCUACAGAAAUUCCUGCA	chr2:54864829-54865036(+)$1	207	71	98	15.0836
GACUCUUAGUGUAUUUCAACUGUGCAG	chr2:198264994-198265250(-)$1	256	20	47	15.9197
GGGUCUCACUAUGUGCAAAGGAGAUUC	chr3:148904365-148904611(-)$1	246	123	150	17.4279
CGGGGAGGUAACAAGAAAUACCGUGCC	chr1:45242245-45242494(+)$1	249	134	161	16.3275

#DB
.....(((((........)))))..))	chr7:75610377-75610584(+)$1	1	23	50	15.5408
((((((((((........)))..))))	chr17:73034885-73035239(-)$1	1	80	107	17.6880
((.(.(((((........)))))).))	chr11:65835605-65835854(+)$1	1	180	207	15.4975
(((((((.((........)))))))))	chrX:76937046-76937331(-)$1	1	198	225	16.6877
..(((((.((........)).))))).	chr16:18845608-18845869(-)$1	1	73	100	15.3761
((((....((........))..)))))	chr3:50095208-50095515(+)$1	1	214	241	15.4699
..(((..(((........)))...)))	chr16:18856648-18856910(-)$1	1	139	166	18.2977
....((((((........))))))...	chr20:8737672-8737926(+)$1	1	64	91	15.7730
(..(((((((........)))))))))	chr22:36694864-36695086(-)$1	1	167	194	16.7356
(((...((((........))))..)))	chr12:104340998-104341254(+)$1	1	8	35	15.5860
..(((.((((........)))).))).	chr1:19471246-19471494(-)$1	1	74	101	15.3516
((((...(((........)))....))	chr22:36681178-36681472(-)$1	1	56	83	17.2494
(((..(((((........)))))....	chr1:234582478-234582763(-)$1	1	212	239	16.8193
(((.((((((........))))))...	chr2:21225637-21225878(-)$1	1	135	162	15.9513
((((((((((........)))))).))	chr17:62500106-62500326(-)$1	1	136	163	14.9922
((..((((((........))))))...	chr12:9231760-9231969(-)$1	1	22	49	16.0753
..((.(((((........)))))))))	chr1:19465475-19465718(-)$1	1	40	67	14.9131
.(((((((((........)))))))))	chr14:31604193-31604498(-)$1	1	200	227	16.1479
((....((((........))))..)))	chr3:52830538-52830757(+)$1	1	6	33	15.9382
((((....((........))...))))	chr4:107252754-107253067(+)$1	1	166	193	17.1013
.(((((.(((........)))))))))	chrX:70513975-70514221(+)$1	1	131	158	16.9976
(...((((((........))))))..)	chr9:71831235-71831477(+)$1	1	139	166	15.8516
((((((.(((........)))..))))	chr1:146680370-146680711(-)$1	1	165	192	17.7111
)))(((.(((........)))...)))	chr1:21091769-21092085(-)$1	1	113	140	17.8393
((.(((.(((........))).))).)	chr20:39751843-39752076(+)$1	1	162	189	17.1937
(.((((((((........).)))))))	chr7:155465460-155465711(+)$1	1	95	122	16.4401
(((..(((((........)))))....	chr8:124346082-124346356(-)$1	1	156	183	16.3536
((((((.(((........)))...)))	chr3:194161939-194162188(-)$1	1	130	157	18.8092
))))(((.((........)).))).((	chrX:70517580-70517835(+)$1	1	143	170	14.7670
(((.((.(((........)))..)).)	chr6:144800959-144801214(+)$1	1	5	32	15.9382
.(....((((........))))...).	chr3:195792308-195792565(-)$1	1	116	143	17.0036
)(((((.(((........))).)))))	chr2:71650029-71650288(+)$1	1	166	193	16.8498
((..((((((........)))))))))	chr11:70820950-70821199(-)$1	1	139	166	16.2637
.((((((.((........)))))))).	chr17:8395676-8395929(-)$1	1	106	133	15.5636
))((((.(((........)))...)))	chr19:15367680-15367933(-)$1	1	175	202	14.6518
.(((((.(((........)))))))))	chrX:70514096-70514340(+)$1	1	10	37	16.9976
.(((((((((........)))))))))	chr1:23637590-23637877(-)$1	1	3	30	17.1766
(...(((.((........)).)))...	chr12:53428292-53428600(+)$1	1	187	214	16.5720
.(((((((((........)))))))))	chrX:76936911-76937186(-)$1	1	44	71	17.1766
.(((.(((((........))))).)))	chr6:144843177-144843407(+)$1	1	175	202	16.4817
((.(((((((........))).)))).	chr10:93702153-93702413(+)$1	1	225	252	15.9078
(((...((((........))))...))	chrY:15028765-15029063(+)$1	1	1	28	17.1457
(.(((..(((........)))..))).	chr9:37588634-37589030(-)$1	1	361	388	17.4488
(((...((((........)))).))))	chr7:94292999-94293293(+)$1	1	213	240	16.6761
((((...(((........)))....))	chr5:139838720-139839012(+)$1	1	219	246	17.7142
..((((..((........))..))).)	chr8:48826367-48826631(-)$1	1	117	144	16.4834
...(((((((........)))))))((	chr2:173450910-173451216(+)$1	1	214	241	13.9178
.(((((.(((........))).)))))	chr11:68334381-68334624(+)$1	1	89	116	15.9995
(.(..(((((........)))))).))	chrX:108904724-108904974(-)$1	1	171	198	15.9861
.(((((.(((........)))))))).	chr7:72892527-72892804(-)$1	1	1	28	15.0658
(((((.((((........))))..)))	chr1:43220641-43220940(-)$1	1	1	28	15.4351
(...(((.((........)).))).))	chr19:14200924-14201194(-)$1	1	173	200	16.3614
((((((.(((........)))))))))	chr17:41570083-41570379(+)$1	1	254	281	17.6099
.((.((.(((........))).)).))	chr7:134625783-134626053(+)$1	1	47	74	15.7336
.(((((..((........))..)))))	chr4:73967992-73968204(-)$1	1	75	102	15.9232
.(((.(((((........))))).)))	chr7:155537661-155537999(+)$1	1	272	299	16.4507
((((((((((........)))))))))	chr18:55280731-55280999(-)$1	1	44	71	17.6867
((((((((((........)))))))..	chr2:54864829-54865036(+)$1	1	71	98	15.0836
(((((.((((........)))).).))	chr2:198264994-198265250(-)$1	1	20	47	15.9197
(((((((.((........)))))))))	chr3:148904365-148904611(-)$1	1	123	150	17.4279
(((((.((((........))))...))	chr1:45242245-45242494(+)$1	1	134	161	16.3275

#PSSM
f : 0.13	g : 0.11	e : 0.09	d : 0.08	! : 0.08	: : 0.06	[ : 0.06	$ : 0.04	b : 0.04	# : 0.04	= : 0.04	c : 0.04	i : 0.03	h : 0.03	" : 0.03	D : 0.01	
e : 0.18	g : 0.09	f : 0.09	i : 0.08	d : 0.08	c : 0.08	$ : 0.04	! : 0.04	" : 0.04	[ : 0.04	= : 0.04	b : 0.03	# : 0.03	h : 0.01	a : 0.01	D : 0.01	: : 0.01	
e : 0.18	g : 0.11	c : 0.11	d : 0.09	f : 0.08	i : 0.06	[ : 0.04	! : 0.04	" : 0.04	= : 0.04	$ : 0.03	b : 0.03	# : 0.03	a : 0.03	: : 0.01	
e : 0.14	c : 0.14	g : 0.13	" : 0.09	f : 0.08	! : 0.08	i : 0.06	[ : 0.04	d : 0.04	= : 0.04	$ : 0.03	# : 0.03	a : 0.01	b : 0.01	
c : 0.14	e : 0.13	f : 0.13	g : 0.11	" : 0.08	i : 0.06	[ : 0.06	# : 0.06	! : 0.04	= : 0.04	b : 0.03	d : 0.03	$ : 0.01	a : 0.01	
e : 0.24	g : 0.11	f : 0.11	c : 0.09	" : 0.08	i : 0.06	# : 0.06	[ : 0.06	= : 0.04	! : 0.03	b : 0.03	d : 0.03	
[ : 0.21	d : 0.16	e : 0.14	f : 0.11	g : 0.08	i : 0.06	! : 0.06	c : 0.04	# : 0.03	" : 0.03	= : 0.03	
c : 0.31	d : 0.14	e : 0.13	[ : 0.11	f : 0.09	g : 0.06	i : 0.04	# : 0.03	! : 0.03	= : 0.01	
c : 0.31	b : 0.18	d : 0.14	e : 0.13	f : 0.09	g : 0.06	i : 0.04	= : 0.01	
c : 0.31	b : 0.18	d : 0.14	e : 0.13	f : 0.09	g : 0.04	i : 0.04	a : 0.01	= : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.31	b : 0.18	d : 0.14	e : 0.13	f : 0.09	g : 0.04	i : 0.04	a : 0.01	= : 0.01	
c : 0.31	b : 0.18	d : 0.14	e : 0.13	f : 0.09	g : 0.04	i : 0.04	] : 0.01	= : 0.01	
c : 0.31	d : 0.14	e : 0.13	f : 0.11	g : 0.08	] : 0.06	2 : 0.04	i : 0.04	= : 0.03	3 : 0.01	
e : 0.19	d : 0.14	2 : 0.11	f : 0.11	g : 0.09	3 : 0.08	] : 0.08	i : 0.04	c : 0.04	4 : 0.03	= : 0.03	
e : 0.24	f : 0.13	3 : 0.13	2 : 0.11	g : 0.09	c : 0.08	] : 0.04	i : 0.04	4 : 0.03	= : 0.03	d : 0.01	b : 0.01	
g : 0.14	f : 0.13	e : 0.11	3 : 0.11	c : 0.11	2 : 0.06	i : 0.06	4 : 0.06	a : 0.04	b : 0.04	] : 0.03	= : 0.03	d : 0.01	
g : 0.14	c : 0.13	e : 0.11	] : 0.09	3 : 0.09	i : 0.08	4 : 0.08	f : 0.06	d : 0.04	= : 0.04	2 : 0.03	b : 0.03	: : 0.01	
c : 0.18	e : 0.14	f : 0.11	g : 0.09	i : 0.08	b : 0.06	d : 0.06	3 : 0.04	4 : 0.04	] : 0.04	= : 0.04	2 : 0.01	a : 0.01	5 : 0.01	
c : 0.18	g : 0.11	f : 0.09	e : 0.09	i : 0.08	b : 0.06	d : 0.06	5 : 0.04	3 : 0.04	4 : 0.04	= : 0.04	] : 0.04	2 : 0.01	a : 0.01	: : 0.01	

#score	998.1375865834465
#seq	61
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF822NMS_DDX55_transcript_m2_run2.txt

#BEAR
"gggggggtttttttttttggggggg]ccc	chrX:132669755-132669987(-)$1	232	85	115	23.4306
$$$$ddddtttttttttttdddd4444eee	chr17:7215347-7215608(+)$1	261	130	160	21.8188
ff"""bbwwwwwwwwwwwwwwbb22fffff	chr5:150404927-150405151(+)$1	224	163	193	21.8543
d[fffffftttttttttttffffff]dddd	chr1:24020293-24020503(+)$1	210	127	157	21.7414
ccc[cccxxxxxxxxxxxxxxxccc]ccc]	chr12:56553270-56553533(+)$1	263	182	212	20.9224
[bb[bbyyyyyyyyyyyyyyyybb]bb]a]	chr14:76117355-76117616(-)$1	261	82	112	21.9943
c[ccc[avvvvvvvvvvvvva]ccc]ccc]	chr5:177310898-177311179(+)$1	281	184	214	25.0544
%%eeeeeuuuuuuuuuuuueeeeebb22cc	chr1:54683854-54684117(+)$1	263	161	191	22.3861
hhhhhhyyyyyyyyyyyyyyyyhhhhhhhh	chr8:63927569-63927826(-)$1	257	79	109	21.8804
ddd[ddddtttttttttttdddd]dddd22	chr4:103717779-103718006(-)$1	227	81	111	21.8505
ee[eeeeettttttttttteeeee]eeeee	chr17:40930996-40931278(+)$1	282	152	182	22.3872
"gggggggtttttttttttggggggg]ccc	chrX:132669865-132670089(-)$1	224	187	217	23.4306
b[eeeeewwwwwwwwwwwwwweeeee]bb:	chr19:18731603-18731867(+)$1	264	179	209	22.3952
gggggggwwwwwwwwwwwwwwggggggg::	chr14:21484904-21485201(-)$1	297	236	266	22.5514
d[eeeeevvvvvvvvvvvvveeeee]dddd	chr12:125515396-125515661(+)$1	265	4	34	23.8388
""ddddvvvvvvvvvvvvvdddd22=====	chr4:74286727-74286932(+)$1	205	109	139	23.6269
d!!dddduuuuuuuuuuuudddd22dddd:	chr19:46029980-46030212(+)$1	232	199	229	23.3344
ggggggguuuuuuuuuuuuggggggg4444	chr1:212534313-212534579(+)$1	266	148	178	24.6810
cc[ddddxxxxxxxxxxxxxxxdddd]ccc	chr6:30593812-30594173(+)$1	361	53	83	19.9402
"gggggggtttttttttttggggggg]ccc	chrX:132669847-132670065(-)$1	218	163	193	23.4306
gggggggwwwwwwwwwwwwwwggggggg::	chr16:337412-337672(-)$1	260	177	207	22.5514
ddd[bbyyyyyyyyyyyyyyyybb]dddd2	chr20:32667895-32668148(+)$1	253	141	171	22.0399
eeee!!auuuuuuuuuuuua22eeeee:::	chr1:161192162-161192380(-)$1	218	94	124	21.1920
cc!!cccuuuuuuuuuuuuccc333ccc::	chr11:65622442-65622692(-)$1	250	219	249	23.9075
e[fffffftttttttttttffffff22eee	chr21:44592379-44592692(+)$1	313	113	143	21.5677
cccddddvvvvvvvvvvvvvdddd]ccccc	chr1:183522882-183523140(+)$1	258	147	177	24.2849
ccc!!bbuuuuuuuuuuuubb22ccc]eee	chr3:185764067-185764304(-)$1	237	93	123	23.4546
((((cccuuuuuuuuuuuucccdddd]eee	chr14:102515947-102516235(+)$1	288	205	235	21.7196
[ffffffuuuuuuuuuuuuffffff]ccc]	chr19:18499786-18500049(+)$1	263	154	184	23.9786
ddd[cccvvvvvvvvvvvvvccc]ddddcc	chr11:61114152-61114455(+)$1	303	26	56	24.2293
ccc[cccvvvvvvvvvvvvvccc]ccc333	chr16:8986662-8986904(-)$1	242	63	93	24.9241
effffffvvvvvvvvvvvvvffffff7777	chr7:2704195-2704444(+)$1	249	63	93	20.5930
====cccuuuuuuuuuuuuccc22======	chr16:29869666-29869928(-)$1	262	111	141	25.2052
!!eeeeewwwwwwwwwwwwwweeeee22dd	chr17:72764787-72765118(+)$1	331	206	236	23.3959
"ddddwwwwwwwwwwwwwwdddd4444ccc	chr14:101201258-101201484(+)$1	226	11	41	22.4876
"ffffffyyyyyyyyyyyyyyyyffffff4	chr2:98263705-98263950(+)$1	245	75	105	21.6438
e[eeeeeuuuuuuuuuuuueeeee]eeeee	chr1:36770125-36770405(+)$1	280	104	134	24.1815
[bb[bbwwwwwwwwwwwwwwbb]bb]ccc]	chr17:73774227-73774528(-)$1	301	72	102	22.4907
hhhaccctttttttttttccc]a22hhhhh	chr2:231912310-231912555(+)$1	245	114	144	22.0529
=======wwwwwwwwwwwwww=========	chr12:124082364-124082631(+)$1	267	76	106	24.5387
===[cccvvvvvvvvvvvvvccc]======	chr2:97525535-97525800(-)$1	265	180	210	25.3696
hhhhhhhwwwwwwwwwwwwwwhhhhhhhhd	chr11:9610912-9611213(+)$1	301	2	32	22.0496
:ddddyyyyyyyyyyyyyyyydddd:ccc"	chr10:95351625-95351873(-)$1	248	110	140	20.2052
iiiiiiixxxxxxxxxxxxxxxiiiiiiii	chr1:110943840-110944115(-)$1	275	143	173	20.7050
c!!ddddwwwwwwwwwwwwwwdddd22ccc	chr16:67471922-67472219(-)$1	297	264	294	23.7651
d!!ddddvvvvvvvvvvvvvdddd22dddd	chr5:74657122-74657388(+)$1	266	87	117	23.7258
[bb[bbyyyyyyyyyyyyyyyybb]bb]a]	chr14:76117416-76117667(-)$1	251	133	163	21.9943
======vvvvvvvvvvvvv===========	chr20:17594309-17594542(-)$1	233	186	216	24.3003
gggggggvvvvvvvvvvvvvggggggg]dd	chr1:31404287-31404612(-)$1	325	138	168	24.3579
$$ddddvvvvvvvvvvvvvdddd4444bb2	chr12:56510333-56510543(+)$1	210	41	71	22.6168
hhhhbbvvvvvvvvvvvvvbb]hhhhhhhh	chr1:227174758-227175038(+)$1	280	22	52	21.7309
ddddcccuuuuuuuuuuuuccc]ddddbb]	chr2:27422431-27422671(-)$1	240	77	107	23.7719
hhh[cccuuuuuuuuuuuuccchhhhhhhh	chr12:118582574-118582846(+)$1	272	46	76	24.0761
hhhhhhyyyyyyyyyyyyyyyyhhhhhhhh	chr11:125490684-125490967(+)$1	283	75	105	21.8804
c"""cccwwwwwwwwwwwwwwccc333ccc	chr16:88712437-88712651(-)$1	214	152	182	24.7688
f[eeeeeuuuuuuuuuuuueeeee]fffff	chr8:17721881-17722153(-)$1	272	95	125	23.8642
!!eeeeeuuuuuuuuuuuueeeee]dddd2	chr9:139735160-139735511(+)$1	351	195	225	24.4918
:ffffffuuuuuuuuuuuuffffff:ffff	chr7:105731336-105731587(-)$1	251	160	190	20.8752
gg!!cccvvvvvvvvvvvvvccc22ggggg	chr17:76170452-76170740(-)$1	288	5	35	25.0136
c!!eeeeettttttttttteeeee22ccc:	chr2:188328969-188329256(-)$1	287	201	231	22.5075
eeeeddddtttttttttttdddd4444eee	chr20:17971470-17971769(+)$1	299	123	153	22.2305
hhhhhhyyyyyyyyyyyyyyyyhhhhhhhh	chr8:63927694-63927979(-)$1	285	232	262	21.8804

#otherMatches

#Seq PSSM
UGCCAAAUUAUUCUCCUAUGUUUGGCUGCU	chrX:132669755-132669987(-)$1	232	85	115	23.4306
UUCUGGCAAAUGGUCCUUGUGCCCUCCCCA	chr17:7215347-7215608(+)$1	261	130	160	21.8188
CUGUAUGGCAUAUUUCAAUCACAGGAGCUU	chr5:150404927-150405151(+)$1	224	163	193	21.8543
AUGGAGUGAUAUUGAUCAGCACUCCUUUAG	chr1:24020293-24020503(+)$1	210	127	157	21.7414
CCUGGGCCAGAACCCUACCAACGCCGAGGU	chr12:56553270-56553533(+)$1	263	182	212	20.9224
ACAUGUGAACUAUGAAACUUAAACCUGCUG	chr14:76117355-76117616(-)$1	261	82	112	21.9943
CUGGACCUCCUGUCUUCUCUGCUUCUGGGU	chr5:177310898-177311179(+)$1	281	184	214	25.0544
CUGCUCUCGCUGACAAUAAAGAGCCCUUGC	chr1:54683854-54684117(+)$1	263	161	191	22.3861
UAUUUAUAUAACAUUAGAUAAUUAAAUAGU	chr8:63927569-63927826(-)$1	257	79	109	21.8804
ACAUUUUGUAAUUUUCAUUUAAAUUGUUAG	chr4:103717779-103718006(-)$1	227	81	111	21.8505
GACCCAGUGUCCCCCAAAGACUGGAUCUGU	chr17:40930996-40931278(+)$1	282	152	182	22.3872
UGCCAAAUUAUUCUCCUAUGUUUGGCUGCU	chrX:132669865-132670089(-)$1	224	187	217	23.4306
AUGCCCCUAUAAAGCGUGCCUGGGGCUUGU	chr19:18731603-18731867(+)$1	264	179	209	22.3952
CUUCUGCUAUAACAAUAAACUGUAGAGGAA	chr14:21484904-21485201(-)$1	297	236	266	22.5514
UUCAUGAUUGACUUCAUAUUUUGUGUAUCU	chr12:125515396-125515661(+)$1	265	4	34	23.8388
GAAGAUCAAAAGCUUAUUCAUCUGUUUUUC	chr4:74286727-74286932(+)$1	205	109	139	23.6269
ACCUUCACCUUUAGCUUCUUGAAAAUGGGC	chr19:46029980-46030212(+)$1	232	199	229	23.3344
GUAUAUUUUUCCCUUUUAUAAUGUGCUUUU	chr1:212534313-212534579(+)$1	266	148	178	24.6810
ccugucucaaaaaaaaaaaaaaaGACUGGG	chr6:30593812-30594173(+)$1	361	53	83	19.9402
UGCCAAAUUAUUCUCCUAUGUUUGGCUGCU	chrX:132669847-132670065(-)$1	218	163	193	23.4306
AUUAUCUUUUCAAAGGUACUUGGAUAAUAA	chr16:337412-337672(-)$1	260	177	207	22.5514
GGACCCUGACAAUAAAGAGAUUGGAUCCCA	chr20:32667895-32668148(+)$1	253	141	171	22.0399
AGCUGACACCCCUGAUCAAGAAGGCUGGAA	chr1:161192162-161192380(-)$1	218	94	124	21.1920
AUGCUGCCAACUUCUAACCGCAAUAGUGAC	chr11:65622442-65622692(-)$1	250	219	249	23.9075
CCACCUUCUCACAUGGAAUGAGGGUUUGAG	chr21:44592379-44592692(+)$1	313	113	143	21.5677
GGUUUACCAUCUCACUCCCAGUAAUACCCA	chr1:183522882-183523140(+)$1	258	147	177	24.2849
CAGCUGAUUUGAAAUACUUUCCCCUGCGCA	chr3:185764067-185764304(-)$1	237	93	123	23.4546
UGCCUGGAAGUCAACGUCACCACCUCACAG	chr14:102515947-102516235(+)$1	288	205	235	21.7196
AUUUAUUUAAAACUCUGGUGAUAAAAAUAA	chr19:18499786-18500049(+)$1	263	154	184	23.9786
UCCAGCAUGCCCUUUCCCUUUGCAGGAGGG	chr11:61114152-61114455(+)$1	303	26	56	24.2293
AGCCCCGUUUCCUUUUAUUUUGGAGCUAAU	chr16:8986662-8986904(-)$1	242	63	93	24.9241
CCAUGGCUGUAUGUACUGUCGCUGUGUUUU	chr7:2704195-2704444(+)$1	249	63	93	20.5930
uucuugauauuuucuacccucacuagaaug	chr16:29869666-29869928(-)$1	262	111	141	25.2052
AAAGGAGACUCUGCCUCCCUCCUCCUCACU	chr17:72764787-72765118(+)$1	331	206	236	23.3959
UCCGCAGAGCUUACUAUACGCGGUCUGUCC	chr14:101201258-101201484(+)$1	226	11	41	22.4876
uguuuuguuuuUUGUUUUUUCUUCAGGACC	chr2:98263705-98263950(+)$1	245	75	105	21.6438
UUUAAGGCCUUUCCGACCACCUUGUGUUCC	chr1:36770125-36770405(+)$1	280	104	134	24.1815
GGUGAUACUUCUUGCUUCUCAUGAUGCAUG	chr17:73774227-73774528(-)$1	301	72	102	22.4907
CUCCCUGUCAGAGUCCCCCAGAGCAGAGAG	chr2:231912310-231912555(+)$1	245	114	144	22.0529
CGAGuuuuauauaauuaauuuaaauuuGUU	chr12:124082364-124082631(+)$1	267	76	106	24.5387
GUGGGCCUGCUGUGGACAAUGGCAUACUCU	chr2:97525535-97525800(-)$1	265	180	210	25.3696
UUACUGGUUUUGUAACUUGUUCUGGUAAUG	chr11:9610912-9611213(+)$1	301	2	32	22.0496
AGGAGUUUAAUUUGCCCUUCUCUCCCCAUC	chr10:95351625-95351873(-)$1	248	110	140	20.2052
AAGAUAUUAGUAAGAAAGGAUCAUGUUUUG	chr1:110943840-110944115(-)$1	275	143	173	20.7050
UCUGAGACAAUAAAACUGCCCUCUCUAAGG	chr16:67471922-67472219(-)$1	297	264	294	23.7651
GUUCAAGAAAUAAAAAUCAACUUGUGUACU	chr5:74657122-74657388(+)$1	266	87	117	23.7258
ACAUGUGAACUAUGAAACUUAAACCUGCUG	chr14:76117416-76117667(-)$1	251	133	163	21.9943
UUGAUGCCAUUAAAACCAACGUUGGUGCCC	chr20:17594309-17594542(-)$1	233	186	216	24.3003
GUGUAUAAUUAACAAACCUGUGUAUGCUUA	chr1:31404287-31404612(-)$1	325	138	168	24.3579
CCCGGCGCUCCAUUAAAUAGCCGUAGACGG	chr12:56510333-56510543(+)$1	210	41	71	22.6168
UUCAGUGCAAAACCCAGAAACAUGAACAGA	chr1:227174758-227175038(+)$1	280	22	52	21.7309
GGAGCAGCCAUCUAUCUACCUGACUCCUGA	chr2:27422431-27422671(-)$1	240	77	107	23.7719
GGGACCUGAACUGUCCUGGAGGCCCCAAGC	chr12:118582574-118582846(+)$1	272	46	76	24.0761
UGAAGAuuuuuuuuuuuuuuuuuuuuuAAU	chr11:125490684-125490967(+)$1	283	75	105	21.8804
CCCCGGCCACCCCCAUCCCCAGCCCCUGCC	chr16:88712437-88712651(-)$1	214	152	182	24.7688
AAAGUGAUUUGAAAAAUACUCAUUCUGAAC	chr8:17721881-17722153(-)$1	272	95	125	23.8642
UUGCCCUCCGCGCUCAUCUGGGGCCGCAGC	chr9:139735160-139735511(+)$1	351	195	225	24.4918
AGUAAAAUAAUCCACCGUUUUUUACAGACC	chr7:105731336-105731587(-)$1	251	160	190	20.8752
GUGACCACACCUUGGCCUUCUGGGAACUCU	chr17:76170452-76170740(-)$1	288	5	35	25.0136
UUCUCUGUAUUCAAAAUUAACAGAUCAUGC	chr2:188328969-188329256(-)$1	287	201	231	22.5075
GGUUUGGGAAACUUAAAUGCCCAUUACAGC	chr20:17971470-17971769(+)$1	299	123	153	22.2305
UAUUUAUAUAACAUUAGAUAAUUAAAUAGU	chr8:63927694-63927979(-)$1	285	232	262	21.8804

#DB
.(((((((...........))))))).)))	chrX:132669755-132669987(-)$1	1	85	115	23.4306
....((((...........))))....)))	chr17:7215347-7215608(+)$1	1	130	160	21.8188
((...((..............))..)))))	chr5:150404927-150405151(+)$1	1	163	193	21.8543
(.((((((...........)))))).))))	chr1:24020293-24020503(+)$1	1	127	157	21.7414
(((.(((...............))).))).	chr12:56553270-56553533(+)$1	1	182	212	20.9224
.((.((................)).)).).	chr14:76117355-76117616(-)$1	1	82	112	21.9943
(.(((.(.............).))).))).	chr5:177310898-177311179(+)$1	1	184	214	25.0544
..(((((............)))))))..))	chr1:54683854-54684117(+)$1	1	161	191	22.3861
((((((................))))))))	chr8:63927569-63927826(-)$1	1	79	109	21.8804
(((.((((...........)))).))))..	chr4:103717779-103718006(-)$1	1	81	111	21.8505
((.(((((...........))))).)))))	chr17:40930996-40931278(+)$1	1	152	182	22.3872
.(((((((...........))))))).)))	chrX:132669865-132670089(-)$1	1	187	217	23.4306
(.(((((..............))))).)).	chr19:18731603-18731867(+)$1	1	179	209	22.3952
(((((((..............)))))))..	chr14:21484904-21485201(-)$1	1	236	266	22.5514
(.(((((.............))))).))))	chr12:125515396-125515661(+)$1	1	4	34	23.8388
..((((.............))))..)))))	chr4:74286727-74286932(+)$1	1	109	139	23.6269
(..((((............))))..)))).	chr19:46029980-46030212(+)$1	1	199	229	23.3344
(((((((............)))))))....	chr1:212534313-212534579(+)$1	1	148	178	24.6810
((.((((...............)))).)))	chr6:30593812-30594173(+)$1	1	53	83	19.9402
.(((((((...........))))))).)))	chrX:132669847-132670065(-)$1	1	163	193	23.4306
(((((((..............)))))))..	chr16:337412-337672(-)$1	1	177	207	22.5514
(((.((................)).)))).	chr20:32667895-32668148(+)$1	1	141	171	22.0399
((((..(............)..)))))...	chr1:161192162-161192380(-)$1	1	94	124	21.1920
((..(((............)))...)))..	chr11:65622442-65622692(-)$1	1	219	249	23.9075
(.((((((...........))))))..)))	chr21:44592379-44592692(+)$1	1	113	143	21.5677
(((((((.............)))).)))((	chr1:183522882-183523140(+)$1	1	147	177	24.2849
(((..((............))..))).)))	chr3:185764067-185764304(-)$1	1	93	123	23.4546
....(((............))))))).)))	chr14:102515947-102516235(+)$1	1	205	235	21.7196
.((((((............)))))).))).	chr19:18499786-18500049(+)$1	1	154	184	23.9786
(((.(((.............))).))))))	chr11:61114152-61114455(+)$1	1	26	56	24.2293
(((.(((.............))).)))...	chr16:8986662-8986904(-)$1	1	63	93	24.9241
(((((((.............))))))....	chr7:2704195-2704444(+)$1	1	63	93	20.5930
(((((((............)))..))))))	chr16:29869666-29869928(-)$1	1	111	141	25.2052
..(((((..............)))))..))	chr17:72764787-72765118(+)$1	1	206	236	23.3959
.((((..............))))....)))	chr14:101201258-101201484(+)$1	1	11	41	22.4876
.((((((................)))))).	chr2:98263705-98263950(+)$1	1	75	105	21.6438
(.(((((............))))).)))))	chr1:36770125-36770405(+)$1	1	104	134	24.1815
.((.((..............)).)).))).	chr17:73774227-73774528(-)$1	1	72	102	22.4907
(((((((...........))).)..)))))	chr2:231912310-231912555(+)$1	1	114	144	22.0529
(((((((..............)))))))))	chr12:124082364-124082631(+)$1	1	76	106	24.5387
(((.(((.............))).))))))	chr2:97525535-97525800(-)$1	1	180	210	25.3696
(((((((..............))))))))(	chr11:9610912-9611213(+)$1	1	2	32	22.0496
.((((................)))).(((.	chr10:95351625-95351873(-)$1	1	110	140	20.2052
(((((((...............))))))))	chr1:110943840-110944115(-)$1	1	143	173	20.7050
(..((((..............))))..)))	chr16:67471922-67472219(-)$1	1	264	294	23.7651
(..((((.............))))..))))	chr5:74657122-74657388(+)$1	1	87	117	23.7258
.((.((................)).)).).	chr14:76117416-76117667(-)$1	1	133	163	21.9943
((((((.............)))))))))))	chr20:17594309-17594542(-)$1	1	186	216	24.3003
(((((((.............))))))).))	chr1:31404287-31404612(-)$1	1	138	168	24.3579
..((((.............))))....)).	chr12:56510333-56510543(+)$1	1	41	71	22.6168
((((((.............)).))))))))	chr1:227174758-227175038(+)$1	1	22	52	21.7309
(((((((............))).)))))).	chr2:27422431-27422671(-)$1	1	77	107	23.7719
(((.(((............)))))))))))	chr12:118582574-118582846(+)$1	1	46	76	24.0761
((((((................))))))))	chr11:125490684-125490967(+)$1	1	75	105	21.8804
(...(((..............)))...)))	chr16:88712437-88712651(-)$1	1	152	182	24.7688
(.(((((............))))).)))))	chr8:17721881-17722153(-)$1	1	95	125	23.8642
..(((((............))))).)))).	chr9:139735160-139735511(+)$1	1	195	225	24.4918
.((((((............)))))).((((	chr7:105731336-105731587(-)$1	1	160	190	20.8752
((..(((.............)))..)))))	chr17:76170452-76170740(-)$1	1	5	35	25.0136
(..(((((...........)))))..))).	chr2:188328969-188329256(-)$1	1	201	231	22.5075
((((((((...........))))....)))	chr20:17971470-17971769(+)$1	1	123	153	22.2305
((((((................))))))))	chr8:63927694-63927979(-)$1	1	232	262	21.8804

#PSSM
c : 0.16	d : 0.12	h : 0.11	" : 0.09	e : 0.09	g : 0.08	[ : 0.06	= : 0.06	$ : 0.03	f : 0.03	! : 0.03	: : 0.03	% : 0.01	b : 0.01	( : 0.01	i : 0.01	
g : 0.12	[ : 0.11	h : 0.11	c : 0.09	d : 0.09	! : 0.09	f : 0.08	= : 0.06	b : 0.04	e : 0.04	$ : 0.03	" : 0.03	% : 0.01	( : 0.01	i : 0.01	
e : 0.14	d : 0.12	g : 0.11	h : 0.11	f : 0.09	! : 0.09	c : 0.08	= : 0.06	b : 0.04	" : 0.03	[ : 0.03	$ : 0.01	( : 0.01	i : 0.01	
e : 0.17	[ : 0.16	d : 0.16	g : 0.11	f : 0.09	h : 0.08	! : 0.04	= : 0.04	" : 0.03	$ : 0.01	c : 0.01	( : 0.01	a : 0.01	i : 0.01	
c : 0.20	d : 0.19	e : 0.14	g : 0.11	f : 0.09	b : 0.08	h : 0.06	! : 0.03	= : 0.03	" : 0.01	i : 0.01	
c : 0.19	d : 0.16	e : 0.14	g : 0.11	b : 0.11	f : 0.09	h : 0.06	= : 0.03	[ : 0.01	! : 0.01	w : 0.01	y : 0.01	i : 0.01	
c : 0.19	e : 0.14	d : 0.12	g : 0.11	y : 0.11	f : 0.09	v : 0.06	b : 0.03	a : 0.03	w : 0.03	= : 0.01	h : 0.01	i : 0.01	
u : 0.24	v : 0.22	w : 0.17	y : 0.12	g : 0.04	d : 0.04	x : 0.04	f : 0.03	e : 0.03	t : 0.01	
u : 0.24	v : 0.22	t : 0.17	w : 0.17	y : 0.12	x : 0.04	
u : 0.24	v : 0.22	t : 0.17	w : 0.17	y : 0.12	x : 0.04	
u : 0.24	v : 0.22	t : 0.17	w : 0.17	y : 0.12	x : 0.04	
u : 0.24	v : 0.22	t : 0.17	w : 0.17	y : 0.12	x : 0.04	
u : 0.24	v : 0.22	t : 0.17	w : 0.17	y : 0.12	x : 0.04	
u : 0.24	v : 0.22	t : 0.17	w : 0.17	y : 0.12	x : 0.04	
u : 0.24	v : 0.22	t : 0.17	w : 0.17	y : 0.12	x : 0.04	
u : 0.24	v : 0.22	t : 0.17	w : 0.17	y : 0.12	x : 0.04	
u : 0.24	v : 0.22	t : 0.17	w : 0.17	y : 0.12	x : 0.04	
u : 0.24	v : 0.22	t : 0.17	w : 0.17	y : 0.12	x : 0.04	
u : 0.24	v : 0.22	w : 0.17	t : 0.16	y : 0.12	x : 0.04	c : 0.01	
w : 0.16	v : 0.16	y : 0.12	d : 0.11	e : 0.09	c : 0.09	g : 0.06	f : 0.06	x : 0.04	b : 0.03	a : 0.01	= : 0.01	
c : 0.16	d : 0.14	w : 0.14	y : 0.12	e : 0.11	g : 0.08	f : 0.08	x : 0.04	b : 0.04	a : 0.01	2 : 0.01	= : 0.01	
d : 0.17	c : 0.16	e : 0.14	g : 0.11	y : 0.11	f : 0.08	x : 0.04	] : 0.04	b : 0.03	2 : 0.03	= : 0.03	h : 0.01	
d : 0.20	e : 0.16	g : 0.11	c : 0.11	h : 0.09	f : 0.08	b : 0.06	2 : 0.03	] : 0.03	= : 0.03	3 : 0.01	y : 0.01	a : 0.01	i : 0.01	
e : 0.16	g : 0.11	d : 0.11	2 : 0.09	f : 0.09	h : 0.09	4 : 0.06	c : 0.06	b : 0.06	] : 0.06	= : 0.03	3 : 0.01	i : 0.01	
] : 0.12	g : 0.11	2 : 0.11	d : 0.11	f : 0.09	h : 0.09	4 : 0.06	c : 0.06	e : 0.06	= : 0.06	b : 0.03	3 : 0.03	i : 0.01	
g : 0.12	d : 0.12	h : 0.11	] : 0.09	e : 0.08	= : 0.08	4 : 0.06	f : 0.06	c : 0.06	2 : 0.06	b : 0.04	: : 0.03	i : 0.01	3 : 0.01	
d : 0.14	c : 0.14	] : 0.11	h : 0.11	4 : 0.08	= : 0.08	f : 0.06	2 : 0.06	g : 0.06	e : 0.04	b : 0.03	7 : 0.01	i : 0.01	3 : 0.01	
c : 0.24	d : 0.12	e : 0.11	h : 0.11	= : 0.08	f : 0.06	] : 0.04	b : 0.04	g : 0.04	2 : 0.03	4 : 0.01	: : 0.01	3 : 0.01	7 : 0.01	i : 0.01	
c : 0.25	d : 0.12	e : 0.11	h : 0.11	= : 0.08	f : 0.06	: : 0.06	b : 0.04	a : 0.03	2 : 0.01	4 : 0.01	3 : 0.01	7 : 0.01	i : 0.01	g : 0.01	
c : 0.16	e : 0.11	] : 0.11	: : 0.11	d : 0.09	h : 0.09	= : 0.08	2 : 0.06	f : 0.04	4 : 0.03	3 : 0.01	7 : 0.01	" : 0.01	i : 0.01	g : 0.01	

#score	1419.1724856041042
#seq	62
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_UTR_m1_run2.txt

#BEAR
=========####cccnnnnnccc666666=========	chr5:140077978-140078324(+)$1	346	257	296	13.8139
"dddd[ggggggg[cccmmmmccc22ggggggg]ddddg	chr19:50436211-50436450(+)$1	239	128	167	15.2705
b[iiiiiiiii"""cccmmmmccc333iiiiiiiii]bb	chr10:7205292-7205600(-)$1	308	103	142	18.7541
####cccffffff!!ccclllccc4444ffffff]ccc3	chrX:77041491-77041762(-)$1	271	135	174	13.9192
::ggggggg!!bb[cccmmmmccc]bbgggggggccc[c	chr2:11964679-11965055(+)$1	376	211	250	13.3568
========[dddd[cccmmmmccc4444dddd333====	chr6:43753093-43753338(+)$1	245	63	102	17.3394
hh[bbcccccc!!ddddmmmmdddd22ccc4444ccc22	chr1:235491151-235491370(-)$1	219	147	186	13.0799
:ccc[ccc[eeeeecccmmmmccc]eeeee]ccc22ccc	chr4:56262043-56262275(+)$1	232	64	103	13.3532
bb[bb!!ccc####cccmmmmccc333ccc22bb22bbf	chr8:145741569-145741803(-)$1	234	177	216	15.7897
iiiiiii"""ccc[cccnnnnnccc]ccciiiiiiiii3	chr16:4475810-4476052(+)$1	242	175	214	14.7650
ee============rrrrrrrrr============gggg	chr1:212792845-212793127(+)$1	282	179	218	12.5970
"ffffff[ccc"""ccclllccc22ccc]ffffffffff	chr5:134364002-134364273(-)$1	271	228	267	12.9483
!==========####bbmmmmbb333==========eee	chr17:76399921-76400166(+)$1	245	199	238	19.0459
!!iiiiiiiii!!bboooooobbiiiiiiiiieeeee]d	chr17:76354339-76354573(-)$1	234	192	231	13.2594
$$==========!!cccnnnnnccc333==========2	chr6:56967248-56967477(+)$1	229	110	149	16.6272
[gggggggaccc[ccclllcccccc333a]ggggggg]b	chr1:12628159-12628384(-)$1	225	49	88	13.8844
gggggg!!ccc####bbmmmmbb88888888ccc]gggg	chr12:49087722-49087966(-)$1	244	167	206	12.9819
ccccc$$$$$ccc!!bbmmmmbb22cccccc22ccc]ee	chr9:139735429-139735680(+)$1	251	33	72	13.4820
bb[a[ccc[cccbbcccmmmmccc]bb]ccc]ccc]abb	chr19:55558592-55558852(+)$1	260	136	175	13.9337
dddbb[ffffff!!cccmmmmccc]ffffffbb22dddd	chr11:47197975-47198220(-)$1	245	162	201	12.5045
dd[bb!!cccbb"""bbmmmmbb333bb]ccc22bb22d	chr6:31499065-31499271(-)$1	206	110	149	13.6426
bb]ddddgggggggcccmmmmccc333gggggggcccpp	chr3:150126122-150126362(+)$1	240	42	81	13.3815
cc[ccc####bb[ddddmmmmdddd]bbcccccc]ccc]	chr7:4802454-4802683(+)$1	229	81	120	13.1397
========ccc"""cccmmmmccc4444ccc]=======	chr14:78182040-78182323(+)$1	283	80	119	19.4691
####==========!!bblllbb22==========22dd	chr2:171850297-171850528(-)$1	231	79	118	15.1990
ccc"""dddd####ddddllldddd333dddd]ccc]dd	chr3:195791103-195791311(-)$1	208	151	190	12.9506
ebb[ggggggg"""cccmmmmcccggggggg]bb]eeee	chr16:70432885-70433120(-)$1	235	25	64	15.2781
iiii"""cccdddd[bbmmmmbb]dddd]ccc4444iii	chr5:6372332-6372579(-)$1	247	188	227	13.4836
ccc"""dddd!!eeeeemmmmeeeee22dddd4444ccc	chr2:127453853-127454100(+)$1	247	94	133	11.8473
bccc[==========[bblllbb22==========]ccc	chr2:70142321-70142581(+)$1	260	99	138	15.1049
iiiiiiiii[ccc[ddddllldddd]ccciiiiiiiii:	chr19:16629258-16629512(-)$1	254	71	110	13.2104
ccc[eeeee"""a!!bbmmmmbb22a22eeeee]ccchh	chr1:243418356-243418611(-)$1	255	198	237	13.6333
eee"""bb[ccceeeeemmmmeeeee333cccbb333ee	chr3:179322223-179322497(-)$1	274	151	190	12.3629
"""============[bblllbb]============]dd	chr16:22217846-22218109(+)$1	263	128	167	15.4224
cc!!ccc[dddd[cccooooooccc]dddd22ccc22cc	chr15:41624994-41625238(+)$1	244	176	215	11.9205
eeeee[cccbb"""cccmmmmccc333bb]ccceeeee:	chr22:21982656-21982869(-)$1	213	105	144	14.7566
eeeccc"""ccc[ddddmmmmdddd333ccc4444ccc]	chr5:71489872-71490113(+)$1	241	126	165	14.6127
!dddd[ccc$$$$$cccmmmmcccccc22dddd22dddd	chr11:62439007-62439260(-)$1	253	59	98	13.3951
[ddddbb"""ccc[cccmmmmccccccbb]dddd]a]ee	chr16:70285672-70285931(-)$1	259	217	256	13.4644
c[a!!ggggggg!!bboooooobb]ggggggg]a]ccc:	chr11:47574507-47574788(-)$1	281	213	252	13.1136
==========####bboooooobb22==========:ii	chr17:1945955-1946216(+)$1	261	81	120	15.6340
!!bbddddeeeee[cccmmmmccc333eeeee>>>>>>>	chr19:13265019-13265263(+)$1	244	131	170	12.9503
ccggggggg[ccc[cccmmmmccc]cccggggggg::FF	chr11:67810744-67810950(+)$1	206	78	117	13.6997
"eeeee####ccc[cccmmmmccc]ccc333eeeee22c	chr3:5257605-5257875(+)$1	270	176	215	14.3196
:=============cccmmmmccc]=============:	chrX:70793569-70793815(+)$1	246	152	191	16.9201
ccggggggg[ccc[cccmmmmccc]cccggggggg::FF	chr11:67810739-67810944(+)$1	205	83	122	13.6997
ggggggg[ccc!!cccooooooccc]ccc]gggggggff	chr12:62860529-62860825(+)$1	296	107	146	14.4891
ff"""ccc$$$$$ddddmmmmdddd4444ccc4444fff	chr19:54972494-54972708(+)$1	214	68	107	13.8726
!==========####bbmmmmbb333==========eee	chr17:76399994-76400244(+)$1	250	126	165	19.0459
b[bb[ggggggg!!cccmmmmccc333ggggggg]bb]b	chr17:47074899-47075157(+)$1	258	112	151	16.8019
dd[dddddddd####bbmmmmbb333dddd]dddddddd	chr3:14166485-14166728(+)$1	243	48	87	12.8827
[a!!ffffff!!ccc[ammmmaccc333ffffff22a]e	chr16:111060-111347(-)$1	287	23	62	14.7475
[gggggggccc!!cccnnnnnccc22ccc]ggggggg]d	chr19:49954794-49955053(-)$1	259	210	249	14.4956
[ccc[ccc[bb####bbnnnnnbb4444bbccc333ccc	chr3:53275080-53275373(-)$1	293	41	80	14.0082
:ccc[ccc[eeeeecccmmmmccc]eeeee]ccc22ccc	chr4:56262033-56262243(+)$1	210	74	113	13.3532
iiiiiiiiieeeee[bbmmmmbb]eeeee]iiiiiiiii	chr15:91537602-91537813(-)$1	211	71	110	13.8806

#otherMatches

#Seq PSSM
GGAAGGGUGACAAGUACCUUCUGCCUCCUCCAUUCUUCC	chr5:140077978-140078324(+)$1	346	257	296	13.8139
UAGCUGCUAGAAGGGCAGGGGUGUGGCUUCUGGGGGCUG	chr19:50436211-50436450(+)$1	239	128	167	15.2705
CCAGACGUGGGCCUGCUUCUUGGCUCACCCACGUUUUGC	chr10:7205292-7205600(-)$1	308	103	142	18.7541
GCCUUUGAGCUGUGGGGAGGUUCCAGCAGCAGCUACAGU	chrX:77041491-77041762(-)$1	271	135	174	13.9192
CAGGACAUUCAUUCUGCCUCAGCGUAAAAUGUCCCAAGC	chr2:11964679-11965055(+)$1	376	211	250	13.3568
UCAGGAGCCUGGGCGGCCUUCGCUUACUCUCACCUGCUU	chr6:43753093-43753338(+)$1	245	63	102	17.3394
GGAGCCGGAGCCUCUGCCUCAGCAGCCGCUGGACCCGCC	chr1:235491151-235491370(-)$1	219	147	186	13.0799
GCCGAGGCAGCUGGCUGACUCCAGUUUAGCCGCCGCCGG	chr4:56262043-56262275(+)$1	232	64	103	13.3532
GCAGUUGAGGAAGACCCUCCAGGGGAACCUGUACAGGCA	chr8:145741569-145741803(-)$1	234	177	216	15.7897
UGGGGGCAUGGCUGAGCCGCAAGCUGAGCGUCCCCGCCU	chr16:4475810-4476052(+)$1	242	175	214	14.7650
GCGGGAGGGCCUGCAGUGAUUCAGCAGGCCCUUCCCAUU	chr1:212792845-212793127(+)$1	282	179	218	12.5970
GAUCCGGACUGAGUGGCCGGGCCUGCGGACUGGAUGUGC	chr5:134364002-134364273(-)$1	271	228	267	12.9483
GGUCCAGCUUCAGGAGUACUGGCGGAGGGGCUGGACGUU	chr17:76399921-76400166(+)$1	245	199	238	19.0459
AAGAGGGCGGACAGGCCCCUCCCUCUGCCCUCUCCCUGC	chr17:76354339-76354573(-)$1	234	192	231	13.2594
AGUUUGACAGAUCUUCACAAAAUGACACAUCUGUUAAAA	chr6:56967248-56967477(+)$1	229	110	149	16.6272
AGUUUGGGGGCCACAGCACCUGGGCACACACCCGAGCAC	chr1:12628159-12628384(-)$1	225	49	88	13.8844
UUGGCUGCCCAGAAGAGGCAACUGGAGAACAUGGAAGCC	chr12:49087722-49087966(-)$1	244	167	206	12.9819
ACGCUAGAAGGCUGGCGAGACCGAAGGCAGCAUGUGAGG	chr9:139735429-139735680(+)$1	251	33	72	13.4820
AGACCCCAGGCUGGGAGGGGACUCACCGAGUGUGGUGCU	chr19:55558592-55558852(+)$1	260	136	175	13.9337
UCCGCGCGGUUGCCGUGUUUCCACCCGGCCGGCCAGGGG	chr11:47197975-47198220(-)$1	245	162	201	12.5045
GUGCAGCGGUGCAUUGCCUUGGCCCAGCUACUAGUGGAG	chr6:31499065-31499271(-)$1	206	110	149	13.6426
GCGGAGGGAGCUGCAGCCGCCGCUUCAGCAGUUUGAAUU	chr3:150126122-150126362(+)$1	240	42	81	13.3815
GGACAGAUGCCUGUUGGGAAGCCAGGAGCUGCCGAGCCA	chr7:4802454-4802683(+)$1	229	81	120	13.1397
GAGACUGGCUUUCACAGAGGUUUGGGUUGGGUUCAGUUU	chr14:78182040-78182323(+)$1	283	80	119	19.4691
UUUGGCAUAUCGAAAAGAAGAUCGAUUUGAUGUGCACCA	chr2:171850297-171850528(-)$1	231	79	118	15.1990
UCUUUUGAAUAUUGGUGCACUGCAUACAGUUCUAGAUGU	chr3:195791103-195791311(-)$1	208	151	190	12.9506
CCUACUGCGGAAAGGAUCUCGAUCUCUGCAGCGGAGUUU	chr16:70432885-70433120(-)$1	235	25	64	15.2781
AGAGUGCUGACCCCUCAUCACUGUGGGGAUCAUUCUCUC	chr5:6372332-6372579(-)$1	247	188	227	13.4836
GCCACCUUUUGCUCCACGGAGGUGGGAGAAAAUCUGGGC	chr2:127453853-127454100(+)$1	247	94	133	11.8473
GGCAGUGGGGGUUGGUCCCGUGGCUCCGGCCCCCGGUGC	chr2:70142321-70142581(+)$1	260	99	138	15.1049
AAAACUUUGACUUGACUUGCGAAGUGAAGCAGGGUUUUC	chr19:16629258-16629512(-)$1	254	71	110	13.2104
CGGCGUGCGAGAGACUCACGGGACGCGACGCGCCCCGCC	chr1:243418356-243418611(-)$1	255	198	237	13.6333
UUAAUAACUCCUCAGGUCCCUGCCUGCACAGGGUAAGUG	chr3:179322223-179322497(-)$1	274	151	190	12.3629
CUGCCGCGCCUGUCUGCCCGAGGGAGGUAGGUGUGGACC	chr16:22217846-22218109(+)$1	263	128	167	15.4224
CUAGAGGAGCUGGACUCCCUCAAGUACAGUGACCUGCAG	chr15:41624994-41625238(+)$1	244	176	215	11.9205
GGAGGAGGUCCCCUGUGAGCCCACUCUGGAACCCUUCCU	chr22:21982656-21982869(-)$1	213	105	144	14.7566
GCCUUGUUUGCAGUGAAUGGUUUCAAUAUGCUCAUCAAU	chr5:71489872-71490113(+)$1	241	126	165	14.6127
AGCGGAGCGCCCACGGGAGCUCCCCGCAGCCGCAAGCUG	chr11:62439007-62439260(-)$1	253	59	98	13.3951
CCGCGACCCAACGCGGCUACGGCCCGUGUACGCGCGCGC	chr16:70285672-70285931(-)$1	259	217	256	13.4644
ugaggcagcggcagGCUCAGGUGCAGCCGCUGGUGAGUG	chr11:47574507-47574788(-)$1	281	213	252	13.1136
GGCUGGGGCCUUUUGACGGCCUUCUUGGUUUCAGCCAAG	chr17:1945955-1946216(+)$1	261	81	120	15.6340
UUCCCCCUCCGCUGACAUACUUGUAUAAGCGGUCAUCGU	chr19:13265019-13265263(+)$1	244	131	170	12.9503
CCCCGUGGCCGCCAGCUUUGUGGCAGGUGCCGUGGAGCC	chr11:67810744-67810950(+)$1	206	78	117	13.6997
GUUCAAUAAAAUGCCCUGUUAAGGAUAUAAUUUGAAGUG	chr3:5257605-5257875(+)$1	270	176	215	14.3196
CUUACUUGUCUGUACAGUACCUUGUUGCAGAUGGGUGAU	chrX:70793569-70793815(+)$1	246	152	191	16.9201
CCCCGUGGCCGCCAGCUUUGUGGCAGGUGCCGUGGAGCC	chr11:67810739-67810944(+)$1	205	83	122	13.6997
GGCCUGGGGAGCUGGCGCUGAAGCUUCUUGCCAGGUUGG	chr12:62860529-62860825(+)$1	296	107	146	14.4891
CACCUGCUUCGCCACAGACUCUUGUUCCCAGCCCCUUGG	chr19:54972494-54972708(+)$1	214	68	107	13.8726
GGUCCAGCUUCAGGAGUACUGGCGGAGGGGCUGGACGUU	chr17:76399994-76400244(+)$1	250	126	165	19.0459
CCGCCGGCCUCUCCGCCUCUUGGCCUAGGAGGCUCGCCG	chr17:47074899-47075157(+)$1	258	112	151	16.8019
GCACAGGGGGAGGUAACUGCAGUAAGUCCCGCUUGGCCC	chr3:14166485-14166728(+)$1	243	48	87	12.8827
ggcaggagGCCCCGGACUGCGGCCGCUCGUCUCCCUCGC	chr16:111060-111347(-)$1	287	23	62	14.7475
UUUCCCAGGGCCAUGGCGAACCCGAAGCUGCUGGGAAUG	chr19:49954794-49955053(-)$1	259	210	249	14.4956
UGUGAAGUAGGCACAGCCCGAAGUAGAACCGCUCCCCAC	chr3:53275080-53275373(-)$1	293	41	80	14.0082
GCCGAGGCAGCUGGCUGACUCCAGUUUAGCCGCCGCCGG	chr4:56262033-56262243(+)$1	210	74	113	13.3532
GGAGUGACAUCGCCGGUGUUUGCGGGUGGUUGUUGCUCU	chr15:91537602-91537813(-)$1	211	71	110	13.8806

#DB
(((((((((....(((.....)))......)))))))))	chr5:140077978-140078324(+)$1	1	257	296	13.8139
.((((.(((((((.(((....)))..))))))).)))))	chr19:50436211-50436450(+)$1	1	128	167	15.2705
(.(((((((((...(((....)))...))))))))).))	chr10:7205292-7205600(-)$1	1	103	142	18.7541
....(((((((((..(((...)))....)))))).))).	chrX:77041491-77041762(-)$1	1	135	174	13.9192
..(((((((..((.(((....))).)))))))))(((.(	chr2:11964679-11965055(+)$1	1	211	250	13.3568
((((((((.((((.(((....)))....))))...))))	chr6:43753093-43753338(+)$1	1	63	102	17.3394
((.((((((((..((((....))))..)))....)))..	chr1:235491151-235491370(-)$1	1	147	186	13.0799
.(((.(((.((((((((....))).))))).)))..)))	chr4:56262043-56262275(+)$1	1	64	103	13.3532
((.((..(((....(((....)))...)))..))..)))	chr8:145741569-145741803(-)$1	1	177	216	15.7897
(((((((...(((.(((.....))).)))))))))))).	chr16:4475810-4476052(+)$1	1	175	214	14.7650
))((((((((((((.........))))))))))))((((	chr1:212792845-212793127(+)$1	1	179	218	12.5970
.((((((.(((...(((...)))..))).))))))))))	chr5:134364002-134364273(-)$1	1	228	267	12.9483
.((((((((((....((....))...)))))))))))))	chr17:76399921-76400166(+)$1	1	199	238	19.0459
..(((((((((..((......)))))))))))))))).)	chr17:76354339-76354573(-)$1	1	192	231	13.2594
..((((((((((..(((.....)))...)))))))))).	chr6:56967248-56967477(+)$1	1	110	149	16.6272
.(((((((((((.(((...))))))...).))))))).)	chr1:12628159-12628384(-)$1	1	49	88	13.8844
((((((..(((....((....))........))).))))	chr12:49087722-49087966(-)$1	1	167	206	12.9819
(((((.....(((..((....))..))))))..))).))	chr9:139735429-139735680(+)$1	1	33	72	13.4820
((.(.(((.((((((((....))).)).))).))).)))	chr19:55558592-55558852(+)$1	1	136	175	13.9337
(((((.((((((..(((....))).))))))))..))))	chr11:47197975-47198220(-)$1	1	162	201	12.5045
((.((..(((((...((....))...)).)))..))..)	chr6:31499065-31499271(-)$1	1	110	149	13.6426
)).))))((((((((((....)))...)))))))(((..	chr3:150126122-150126362(+)$1	1	42	81	13.3815
((.(((....((.((((....)))).)))))))).))).	chr7:4802454-4802683(+)$1	1	81	120	13.1397
(((((((((((...(((....)))....))).)))))))	chr14:78182040-78182323(+)$1	1	80	119	19.4691
....((((((((((..((...))..))))))))))..))	chr2:171850297-171850528(-)$1	1	79	118	15.1990
(((...((((....((((...))))...)))).))).))	chr3:195791103-195791311(-)$1	1	151	190	12.9506
(((.(((((((...(((....)))))))))).)).))))	chr16:70432885-70433120(-)$1	1	25	64	15.2781
((((...(((((((.((....)).)))).)))....)))	chr5:6372332-6372579(-)$1	1	188	227	13.4836
(((...((((..(((((....)))))..))))....)))	chr2:127453853-127454100(+)$1	1	94	133	11.8473
)(((.((((((((((.((...))..)))))))))).)))	chr2:70142321-70142581(+)$1	1	99	138	15.1049
(((((((((.(((.((((...)))).)))))))))))).	chr19:16629258-16629512(-)$1	1	71	110	13.2104
(((.(((((...(..((....))..)..))))).)))))	chr1:243418356-243418611(-)$1	1	198	237	13.6333
(((...((.((((((((....)))))...)))))...))	chr3:179322223-179322497(-)$1	1	151	190	12.3629
...((((((((((((.((...)).)))))))))))).))	chr16:22217846-22218109(+)$1	1	128	167	15.4224
((..(((.((((.(((......))).))))..)))..))	chr15:41624994-41625238(+)$1	1	176	215	11.9205
(((((.(((((...(((....)))...)).)))))))).	chr22:21982656-21982869(-)$1	1	105	144	14.7566
((((((...(((.((((....))))...)))....))).	chr5:71489872-71490113(+)$1	1	126	165	14.6127
.((((.(((.....(((....))))))..))))..))))	chr11:62439007-62439260(-)$1	1	59	98	13.3951
.((((((...(((.(((....)))))))).)))).).))	chr16:70285672-70285931(-)$1	1	217	256	13.4644
(.(..(((((((..((......)).))))))).).))).	chr11:47574507-47574788(-)$1	1	213	252	13.1136
((((((((((....((......))..)))))))))).((	chr17:1945955-1946216(+)$1	1	81	120	15.6340
..(((((((((((.(((....)))...))))).......	chr19:13265019-13265263(+)$1	1	131	170	12.9503
))(((((((.(((.(((....))).))))))))))..))	chr11:67810744-67810950(+)$1	1	78	117	13.6997
.(((((....(((.(((....))).)))...)))))..)	chr3:5257605-5257875(+)$1	1	176	215	14.3196
.((((((((((((((((....))).))))))))))))).	chrX:70793569-70793815(+)$1	1	152	191	16.9201
))(((((((.(((.(((....))).))))))))))..))	chr11:67810739-67810944(+)$1	1	83	122	13.6997
(((((((.(((..(((......))).))).)))))))((	chr12:62860529-62860825(+)$1	1	107	146	14.4891
((...(((.....((((....))))....)))....)))	chr19:54972494-54972708(+)$1	1	68	107	13.8726
.((((((((((....((....))...)))))))))))))	chr17:76399994-76400244(+)$1	1	126	165	19.0459
(.((.(((((((..(((....)))...))))))).)).)	chr17:47074899-47075157(+)$1	1	112	151	16.8019
((.((((((((....((....))...)))).))))))))	chr3:14166485-14166728(+)$1	1	48	87	12.8827
.(..((((((..(((.(....))))...))))))..).)	chr16:111060-111347(-)$1	1	23	62	14.7475
.((((((((((..(((.....)))..))).))))))).)	chr19:49954794-49955053(-)$1	1	210	249	14.4956
.(((.(((.((....((.....))....)))))...)))	chr3:53275080-53275373(-)$1	1	41	80	14.0082
.(((.(((.((((((((....))).))))).)))..)))	chr4:56262033-56262243(+)$1	1	74	113	13.3532
((((((((((((((.((....)).))))).)))))))))	chr15:91537602-91537813(-)$1	1	71	110	13.8806

#PSSM
c : 0.16	b : 0.10	e : 0.08	! : 0.08	[ : 0.08	= : 0.07	" : 0.07	: : 0.07	i : 0.07	d : 0.05	# : 0.03	g : 0.03	h : 0.01	$ : 0.01	f : 0.01	
c : 0.21	= : 0.12	d : 0.10	e : 0.08	b : 0.07	i : 0.07	g : 0.07	[ : 0.05	# : 0.03	f : 0.03	! : 0.03	: : 0.01	h : 0.01	$ : 0.01	" : 0.01	a : 0.01	
= : 0.16	c : 0.14	g : 0.12	i : 0.10	[ : 0.10	d : 0.07	e : 0.07	b : 0.05	# : 0.03	" : 0.03	! : 0.03	f : 0.01	] : 0.01	a : 0.01	
= : 0.17	g : 0.12	c : 0.12	i : 0.10	b : 0.10	d : 0.08	" : 0.07	! : 0.05	# : 0.03	[ : 0.03	e : 0.03	f : 0.01	a : 0.01	
= : 0.19	g : 0.14	d : 0.10	[ : 0.10	i : 0.08	c : 0.08	" : 0.08	b : 0.07	e : 0.05	f : 0.03	! : 0.01	
= : 0.21	c : 0.17	g : 0.17	i : 0.08	[ : 0.07	" : 0.07	d : 0.05	! : 0.03	f : 0.03	e : 0.03	$ : 0.01	b : 0.01	
= : 0.21	g : 0.17	c : 0.17	i : 0.08	d : 0.08	! : 0.05	f : 0.05	# : 0.03	" : 0.03	b : 0.03	$ : 0.01	e : 0.01	
= : 0.21	c : 0.19	g : 0.17	i : 0.07	d : 0.07	f : 0.05	" : 0.05	[ : 0.05	# : 0.03	! : 0.01	$ : 0.01	e : 0.01	b : 0.01	
c : 0.19	= : 0.17	g : 0.14	[ : 0.10	i : 0.07	d : 0.07	f : 0.05	" : 0.05	$ : 0.03	# : 0.03	e : 0.03	a : 0.01	
c : 0.23	= : 0.16	g : 0.08	d : 0.08	e : 0.07	# : 0.05	f : 0.05	" : 0.05	$ : 0.05	[ : 0.05	i : 0.03	b : 0.03	! : 0.01	
c : 0.30	= : 0.14	g : 0.08	# : 0.07	d : 0.07	e : 0.07	b : 0.07	! : 0.05	i : 0.03	f : 0.03	$ : 0.03	" : 0.01	
c : 0.19	# : 0.16	" : 0.10	! : 0.10	= : 0.10	g : 0.07	e : 0.07	b : 0.05	d : 0.05	f : 0.03	$ : 0.03	
# : 0.16	! : 0.14	c : 0.14	" : 0.10	e : 0.10	= : 0.08	[ : 0.07	g : 0.03	b : 0.03	d : 0.03	$ : 0.03	f : 0.01	a : 0.01	
[ : 0.17	# : 0.14	! : 0.12	c : 0.10	" : 0.10	d : 0.08	e : 0.08	= : 0.08	b : 0.03	g : 0.01	$ : 0.01	
c : 0.53	d : 0.10	# : 0.08	! : 0.07	b : 0.05	[ : 0.03	e : 0.03	= : 0.03	r : 0.01	" : 0.01	
c : 0.53	b : 0.21	d : 0.10	[ : 0.05	e : 0.03	r : 0.01	o : 0.01	! : 0.01	
c : 0.44	b : 0.23	d : 0.10	o : 0.08	n : 0.03	e : 0.03	r : 0.01	l : 0.01	a : 0.01	
m : 0.66	n : 0.08	o : 0.08	b : 0.05	l : 0.03	d : 0.03	c : 0.01	r : 0.01	
m : 0.66	l : 0.14	n : 0.08	o : 0.08	r : 0.01	
m : 0.66	l : 0.12	n : 0.08	o : 0.08	r : 0.01	c : 0.01	
m : 0.66	l : 0.10	n : 0.08	o : 0.08	c : 0.03	r : 0.01	
c : 0.46	b : 0.23	d : 0.10	o : 0.07	n : 0.05	e : 0.03	r : 0.01	a : 0.01	
c : 0.55	b : 0.28	d : 0.10	e : 0.03	r : 0.01	
c : 0.53	d : 0.10	2 : 0.08	3 : 0.07	] : 0.05	b : 0.05	e : 0.03	= : 0.01	i : 0.01	8 : 0.01	
3 : 0.17	] : 0.17	2 : 0.14	c : 0.14	d : 0.12	4 : 0.07	e : 0.05	= : 0.03	6 : 0.01	i : 0.01	8 : 0.01	g : 0.01	
3 : 0.26	c : 0.12	4 : 0.08	e : 0.08	] : 0.08	= : 0.08	2 : 0.07	b : 0.03	g : 0.03	6 : 0.01	i : 0.01	8 : 0.01	f : 0.01	d : 0.01	a : 0.01	
3 : 0.21	c : 0.19	= : 0.14	4 : 0.08	b : 0.07	g : 0.05	2 : 0.05	e : 0.05	d : 0.05	6 : 0.01	i : 0.01	8 : 0.01	f : 0.01	
c : 0.19	= : 0.14	g : 0.10	3 : 0.10	4 : 0.08	e : 0.07	b : 0.07	d : 0.05	2 : 0.05	i : 0.03	6 : 0.01	8 : 0.01	] : 0.01	f : 0.01	
c : 0.19	= : 0.16	g : 0.14	d : 0.08	e : 0.08	f : 0.05	] : 0.05	b : 0.05	i : 0.03	3 : 0.03	6 : 0.01	a : 0.01	8 : 0.01	2 : 0.01	4 : 0.01	
c : 0.19	= : 0.16	g : 0.14	d : 0.10	] : 0.10	i : 0.07	f : 0.07	e : 0.07	6 : 0.01	8 : 0.01	3 : 0.01	b : 0.01	
g : 0.19	c : 0.19	= : 0.17	i : 0.08	d : 0.08	f : 0.07	] : 0.05	2 : 0.03	e : 0.03	4 : 0.01	8 : 0.01	3 : 0.01	
= : 0.17	g : 0.17	c : 0.17	d : 0.10	i : 0.08	f : 0.05	2 : 0.05	] : 0.05	e : 0.05	4 : 0.03	b : 0.01	
= : 0.19	g : 0.16	c : 0.14	4 : 0.08	i : 0.07	b : 0.07	f : 0.05	e : 0.05	d : 0.05	2 : 0.03	] : 0.03	3 : 0.01	> : 0.01	
= : 0.19	g : 0.14	c : 0.14	4 : 0.08	i : 0.07	f : 0.05	b : 0.05	e : 0.05	2 : 0.05	] : 0.03	3 : 0.03	d : 0.03	a : 0.01	> : 0.01	
= : 0.19	c : 0.14	] : 0.12	2 : 0.10	g : 0.08	i : 0.07	4 : 0.07	3 : 0.05	e : 0.05	d : 0.03	f : 0.01	b : 0.01	> : 0.01	
c : 0.17	= : 0.16	2 : 0.10	g : 0.08	d : 0.07	i : 0.07	e : 0.07	4 : 0.05	] : 0.03	b : 0.03	3 : 0.03	: : 0.03	f : 0.01	a : 0.01	> : 0.01	
c : 0.23	= : 0.08	] : 0.08	g : 0.08	e : 0.08	d : 0.07	i : 0.07	2 : 0.07	: : 0.05	b : 0.03	f : 0.03	a : 0.03	3 : 0.01	> : 0.01	
c : 0.17	d : 0.12	e : 0.12	= : 0.08	i : 0.08	] : 0.08	b : 0.05	2 : 0.05	f : 0.05	g : 0.03	F : 0.03	[ : 0.01	p : 0.01	h : 0.01	> : 0.01	
d : 0.16	c : 0.14	e : 0.12	b : 0.07	f : 0.07	: : 0.07	= : 0.05	g : 0.05	i : 0.05	3 : 0.03	2 : 0.03	] : 0.03	F : 0.03	p : 0.01	h : 0.01	> : 0.01	

#score	804.8979748255023
#seq	56
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF124YKO_KHDRBS1_CDS_m1_run2.txt

#BEAR
ffffffyyyyyyyyyyyyyyyyffffff	chrM:8382-8602(+)$1	220	5	33	40.9779
2bbcccyyyyyyyyyyyyyyyycccccc	chr2:175006448-175006754(-)$1	306	171	199	41.4392

#otherMatches

#Seq PSSM
GUAUGGCCCACCAUAAUUACCCCCAUAC	chrM:8382-8602(+)$1	220	5	33	40.9779
AGGAGGAGAUAAAAAACUAAAACCUGAA	chr2:175006448-175006754(-)$1	306	171	199	41.4392

#DB
((((((................))))))	chrM:8382-8602(+)$1	1	5	33	40.9779
.))(((................)))(((	chr2:175006448-175006754(-)$1	1	171	199	41.4392

#PSSM
f : 0.50	2 : 0.50	
f : 0.50	b : 0.50	
f : 0.50	b : 0.50	
f : 0.50	c : 0.50	
f : 0.50	c : 0.50	
f : 0.50	c : 0.50	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
y : 1.00	
f : 0.50	c : 0.50	
f : 0.50	c : 0.50	
f : 0.50	c : 0.50	
f : 0.50	c : 0.50	
f : 0.50	c : 0.50	
f : 0.50	c : 0.50	

#score	82.41718529920001
#seq	2
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF928OEC_EIF3H_UTR_m3_run1.txt

#BEAR
"ffffff[aqqqqqqqqa]ffffff3	chr9:117073211-117073451(+)$1	240	29	55	15.1034
$$gggggggqqqqqqqqggggggg77	chr3:184107054-184107270(+)$1	216	8	34	15.2862
ggggg[cccqqqqqqqqcccgggggg	chr17:36924054-36924322(-)$1	268	130	156	17.0648
hhhhh[cccqqqqqqqqccc]hhhhh	chr2:234376968-234377207(+)$1	239	7	33	15.3095
###ffffffqqqqqqqqffffff444	chr9:117073025-117073258(+)$1	233	127	153	15.4114
[bb!!ddddqqqqqqqqdddd22bb]	chr17:1657688-1657953(+)$1	265	168	194	15.0443
eegggggggqqqqqqqqggggggg55	chr5:175954924-175955194(-)$1	270	156	182	14.9035
dddd[cccaqqqqqqqqa]ccc]ddd	chr16:66754765-66755043(-)$1	278	143	169	15.9506
[dddd!!bbqqqqqqqqbbdddd]dd	chr2:11484587-11484813(-)$1	226	113	139	15.5834
ddd"""cccqqqqqqqqccc]dddd]	chr2:8925925-8926216(-)$1	291	72	98	16.7445
d[gggggggqqqqqqqqggggggg]d	chr6:3272751-3273022(-)$1	271	40	66	16.3572
f[bb[ddddqqqqqqqqdddd]bb22	chr1:110174067-110174331(+)$1	264	56	82	14.8895
$$$bbddddqqqqqqqqdddd]bb44	chr20:61920427-61920701(+)$1	274	207	233	14.8056
"""ddddbbqqqqqqqqbb]dddd22	chr1:226034037-226034272(-)$1	235	75	101	15.5690
ccc[eeeeeqqqqqqqqeeeee]ccc	chrX:128657223-128657460(-)$1	237	98	124	15.4659
iiidddd[aqqqqqqqqa]dddd333	chr5:612375-612621(+)$1	246	87	113	16.1433
""gggggggqqqqqqqqggggggg44	chr17:27401576-27401862(-)$1	286	191	217	16.8047
dd$$$$$bbqqqqqqqqbb333dddd	chr11:62283650-62283894(-)$1	244	213	239	14.9359
cccc[ddddqqqqqqqqddddccc44	chr3:79068164-79068442(-)$1	278	174	200	16.3752
ggggeeeeeqqqqqqqqeeeee:fff	chr13:77765728-77765993(-)$1	265	154	180	13.9829
gccc"""bbqqqqqqqqbb333ccc]	chr9:117072851-117073094(+)$1	243	86	112	16.5043
&eeeee!!aqqqqqqqqa22eeeee8	chr12:56668685-56669003(-)$1	318	263	289	14.2801
!!ccc[cccqqqqqqqqcccccc22b	chr2:238482988-238483269(-)$1	281	200	226	16.6743
dd"""ddddqqqqqqqqdddd333dd	chr4:184169852-184170110(+)$1	258	221	247	16.1898
ccccc[cccqqqqqqqqccc]ccc::	chr1:1322399-1322627(-)$1	228	54	80	15.2633
ddd[eeeeeqqqqqqqqeeeeedddd	chr17:37617814-37618089(+)$1	275	205	231	14.8204
cccbb[cccqqqqqqqqccc]bb]cc	chr16:1819635-1819884(+)$1	249	153	179	16.0563
g!!bb[cccqqqqqqqqcccbb22gg	chr10:18948362-18948676(+)$1	314	276	302	15.7802
iiiiiiiiiqqqqqqqqiiiiiiiii	chr19:10802325-10802604(+)$1	279	196	222	16.4192
hhgggggggqqqqqqqqggggggg]h	chr12:26985716-26986036(-)$1	320	161	187	15.9084
####bb[bbqqqqqqqqbb]bbeeee	chr16:24802265-24802563(+)$1	298	128	154	14.8282
cc[ccc[bbqqqqqqqqbbccc]ccc	chr6:31931161-31931437(+)$1	276	226	252	16.1576
ffffffcccqqqqqqqqccc]fffff	chr17:62499449-62499719(-)$1	270	177	203	15.4970
cc####cccqqqqqqqqccc22ccc]	chr1:110527523-110527777(+)$1	254	28	54	16.9250
iiiiiiiiiqqqqqqqqiiiiiiiii	chr17:27447645-27447870(-)$1	225	35	61	16.4192
$$$a[ddddqqqqqqqqdddda====	chr2:219602207-219602494(+)$1	287	167	193	15.7951
cccc[ddddqqqqqqqqddddcccEE	chr6:158734145-158734424(+)$1	279	249	275	13.9597
ee[ffffffqqqqqqqqffffff333	chr12:112757277-112757603(-)$1	326	49	75	15.3558
c"""bb[bbqqqqqqqqbb]bb333c	chr17:36884951-36885233(+)$1	282	22	48	15.5252
[ccc[ddddqqqqqqqqddddccc]d	chr11:85779682-85780009(-)$1	327	245	271	16.3171
[eeeeecccqqqqqqqqccc]eeeee	chr19:2231960-2232208(+)$1	248	64	90	16.2760
hhhhhhcccqqqqqqqqccc]hhhhh	chr15:65158152-65158432(+)$1	280	234	260	14.9265
eeeee[cccqqqqqqqqccc]eeeee	chr15:34673336-34673557(-)$1	221	82	108	16.2321
[a!!eeeeeqqqqqqqqeeeee]a]c	chr17:2283548-2283809(+)$1	261	159	185	15.8793
fff"""cccqqqqqqqqcccffffff	chr15:93568185-93568443(+)$1	258	129	155	16.0282
eeee"""bbqqqqqqqqbbeeeee22	chr15:91462931-91463242(+)$1	311	52	78	15.4956
gggg"""bbqqqqqqqqbb]gggggg	chr3:9876682-9876938(+)$1	256	34	60	16.3458
cc[ffffffqqqqqqqqffffff]cc	chr20:61917662-61917894(+)$1	232	42	68	15.0954
ddd!!ddddqqqqqqqqdddd]dddd	chr2:20251167-20251499(-)$1	332	186	212	15.6889
ddd!!ddddqqqqqqqqdddddddd]	chr1:6695429-6695693(-)$1	264	162	188	15.7487
[eeeee[bbqqqqqqqqbb]eeeeed	chr16:2156746-2157011(-)$1	265	95	121	15.4572
dd!!ccc[aqqqqqqqqa]ccc4444	chr5:154194521-154194783(+)$1	262	134	160	16.5953
eeeee[cccqqqqqqqqccc]eeeee	chr17:36925682-36925969(-)$1	287	142	168	16.2321
b[dddd[bbqqqqqqqqbb]dddd22	chr2:118676692-118676973(-)$1	281	170	196	15.0328
[dddd[cccqqqqqqqqccc333ddd	chr7:151944886-151945147(-)$1	261	179	205	16.6149
==="""cccqqqqqqqqccc22====	chr6:64394111-64394360(+)$1	249	172	198	17.1594
gggggg!!aqqqqqqqqa22gggggg	chr3:197024776-197025033(-)$1	257	166	192	15.9547
"dddd[cccqqqqqqqqccc]ddddf	chr16:24834729-24834994(+)$1	265	191	217	16.2389
cc"""ddddqqqqqqqqdddd333cc	chr20:39803729-39803986(+)$1	257	173	199	16.5218
!!gggggggqqqqqqqqggggggg]d	chr3:42687280-42687573(+)$1	293	62	88	16.6985

#otherMatches

#Seq PSSM
CGUGGCCUCUCAGCUCUGCGGCCACC	chr9:117073211-117073451(+)$1	240	29	55	15.1034
aaggcagggaugcuuugcccugcccu	chr3:184107054-184107270(+)$1	216	8	34	15.2862
GGCAGAUGGGGGUCAAACCACUGCCU	chr17:36924054-36924322(-)$1	268	130	156	17.0648
GCACUGGGCUCUCGGGUGCUGGGUGC	chr2:234376968-234377207(+)$1	239	7	33	15.3095
UCCUUGGGAACAAUGGAUCCCAGCUU	chr9:117073025-117073258(+)$1	233	127	153	15.4114
CUGCCUGGACCAGCCUCUCCACUCAU	chr17:1657688-1657953(+)$1	265	168	194	15.0443
AGGGUUGGGGGUCUGUGCUCAGCUGA	chr5:175954924-175955194(-)$1	270	156	182	14.9035
UCCGGGUGCAGUAUGCAGUCAUGUGG	chr16:66754765-66755043(-)$1	278	143	169	15.9506
gcggcgaccauggcagcgggccggcg	chr2:11484587-11484813(-)$1	226	113	139	15.5834
AAAAACAUGUUGUCUCCCAUCUUUUG	chr2:8925925-8926216(-)$1	291	72	98	16.7445
CUGGGCAGCGAGACGCAGUUGCUCUG	chr6:3272751-3273022(-)$1	271	40	66	16.3572
UUCCUGGGCAAAUCUAAGCCUUGGCC	chr1:110174067-110174331(+)$1	264	56	82	14.8895
GAAGCCAGCCCCCGAGAGCUGAGCGU	chr20:61920427-61920701(+)$1	274	207	233	14.8056
CCAGGCUACAUCCAGGAGUAAGCUAU	chr1:226034037-226034272(-)$1	235	75	101	15.5690
UCCCGCUCCCACGGCAUGGAGCAGGA	chrX:128657223-128657460(-)$1	237	98	124	15.4659
GCUCCGUUUGAAACAUGGCGCGGGCU	chr5:612375-612621(+)$1	246	87	113	16.1433
CACCCUGACCUUCUUCUGUCAGGGGC	chr17:27401576-27401862(-)$1	286	191	217	16.8047
GUUCUUUAGUGUUGUUUCUUUCACCC	chr11:62283650-62283894(-)$1	244	213	239	14.9359
CUCCGCAUCCCCCAAGUGAUGGGAAC	chr3:79068164-79068442(-)$1	278	174	200	16.3752
CAGGCAUCUAUUACCACAGAUGAUGG	chr13:77765728-77765993(-)$1	265	154	180	13.9829
AGUACCGCCUGGAAGUUGGACCUGCG	chr9:117072851-117073094(+)$1	243	86	112	16.5043
CAUGCUUUGUUUCUGAUCUUGGCAUU	chr12:56668685-56669003(-)$1	318	263	289	14.2801
UUUCUGUCCAAUGAGCAGGAAGAUUC	chr2:238482988-238483269(-)$1	281	200	226	16.6743
AUGGAUGGUGAACUGGAACCAGAAGU	chr4:184169852-184170110(+)$1	258	221	247	16.1898
CUGGGGAGUACCUGAUGGCUGCCCUU	chr1:1322399-1322627(-)$1	228	54	80	15.2633
GCCCGGGCCUGAGGACUGGCUCGGCG	chr17:37617814-37618089(+)$1	275	205	231	14.8204
CCCAGACACGCUACUAAGUGCCUAGG	chr16:1819635-1819884(+)$1	249	153	179	16.0563
CUCGAAUCCGAGGCAGAGGGUCCCGC	chr10:18948362-18948676(+)$1	314	276	302	15.7802
GACUACACGAUUGGACGUGUGUGGUU	chr19:10802325-10802604(+)$1	279	196	222	16.4192
CUGAGCCGCGACGCUCAGUGGCUCGG	chr12:26985716-26986036(-)$1	320	161	187	15.9084
ACAGGAAUGGUCAAGAGCAAUCAGUG	chr16:24802265-24802563(+)$1	298	128	154	14.8282
UGUGGCUACCCCUCCCUGUGCCCCAG	chr6:31931161-31931437(+)$1	276	226	252	16.1576
UAAUGAAAAGGGUUUUAUUUGUCAUU	chr17:62499449-62499719(-)$1	270	177	203	15.4970
GCAGgggccggcaggagggugggcga	chr1:110527523-110527777(+)$1	254	28	54	16.9250
AGCUGGGGGAUAAGCUGCCCCUGGCU	chr17:27447645-27447870(-)$1	225	35	61	16.4192
CGUGUGGCCAUGAUGUGGGCCCCUCA	chr2:219602207-219602494(+)$1	287	167	193	15.7951
UGCACAAACUCUGGUCUGUUUUGCAC	chr6:158734145-158734424(+)$1	279	249	275	13.9597
UUCCUUAGAUUUUAACCUUUGAGACC	chr12:112757277-112757603(-)$1	326	49	75	15.3558
GUUCCCCUGCCCCACAACAUGGUCUC	chr17:36884951-36885233(+)$1	282	22	48	15.5252
CUGCCGUAUCCAAGACAGUAUGCAAG	chr11:85779682-85780009(-)$1	327	245	271	16.3171
GACACUCCCAGACUGAGGGGUGGUGU	chr19:2231960-2232208(+)$1	248	64	90	16.2760
CCCAGGGCUUUGGGGGCGGCACUUGG	chr15:65158152-65158432(+)$1	280	234	260	14.9265
UUUAAGUUUAUUUGUAAAAAGUUAAA	chr15:34673336-34673557(-)$1	221	82	108	16.2321
CGAGGGCAGCCCAUUAUCUGUCGCAG	chr17:2283548-2283809(+)$1	261	159	185	15.8793
CAUGGUCGGGGCAGGAACUGGUGCAU	chr15:93568185-93568443(+)$1	258	129	155	16.0282
GGAGAUUGCUACCUUUCGCCUCCGCU	chr15:91462931-91463242(+)$1	311	52	78	15.4956
GAAGCCCCUUCCUCCACAGACUUCUG	chr3:9876682-9876938(+)$1	256	34	60	16.3458
CGUCUCCUUCCAGGUCCAGGGAGUCG	chr20:61917662-61917894(+)$1	232	42	68	15.0954
GGCCCGGCCAAGAAGGAGGCCCGCCU	chr2:20251167-20251499(-)$1	332	186	212	15.6889
GGGAACCAGACUGCAGCCUGGCCCAU	chr1:6695429-6695693(-)$1	264	162	188	15.7487
UCCUUGGAGUGUGUGUCCUGCAAGGC	chr16:2156746-2157011(-)$1	265	95	121	15.4572
AUGUGCCUGGGCUUGGACUGGCUAGA	chr5:154194521-154194783(+)$1	262	134	160	16.5953
GGGCUUUAGCAAUGAGACUGCAGCCU	chr17:36925682-36925969(-)$1	287	142	168	16.2321
CCGUCUGGGAAGUAGGGCUGAGACUA	chr2:118676692-118676973(-)$1	281	170	196	15.0328
UAUUGACAGAAAAGAUAUUGGAACAA	chr7:151944886-151945147(-)$1	261	179	205	16.6149
UCAGUGUCAUCUUGUCUUGAAAUGAA	chr6:64394111-64394360(+)$1	249	172	198	17.1594
GCGGCCGAGAAGGAGGACGAGGCCGC	chr3:197024776-197025033(-)$1	257	166	192	15.9547
GACCGAUCUCAAUCACUGGAAUGGUG	chr16:24834729-24834994(+)$1	265	191	217	16.2389
ACUUAGUUUGUGAUGUAAGGCACUGU	chr20:39803729-39803986(+)$1	257	173	199	16.5218
UUACAAGAUUUUUAUAUAUUUUGUUU	chr3:42687280-42687573(+)$1	293	62	88	16.6985

#DB
.((((((.(........).)))))).	chr9:117073211-117073451(+)$1	1	29	55	15.1034
..(((((((........)))))))..	chr3:184107054-184107270(+)$1	1	8	34	15.2862
(((((.(((........)))))))))	chr17:36924054-36924322(-)$1	1	130	156	17.0648
(((((.(((........))).)))))	chr2:234376968-234377207(+)$1	1	7	33	15.3095
...((((((........))))))...	chr9:117073025-117073258(+)$1	1	127	153	15.4114
.((..((((........))))..)).	chr17:1657688-1657953(+)$1	1	168	194	15.0443
(((((((((........)))))))..	chr5:175954924-175955194(-)$1	1	156	182	14.9035
((((.((((........).))).)))	chr16:66754765-66755043(-)$1	1	143	169	15.9506
.((((..((........)))))).))	chr2:11484587-11484813(-)$1	1	113	139	15.5834
(((...(((........))).)))).	chr2:8925925-8926216(-)$1	1	72	98	16.7445
(.(((((((........))))))).)	chr6:3272751-3273022(-)$1	1	40	66	16.3572
(.((.((((........)))).))..	chr1:110174067-110174331(+)$1	1	56	82	14.8895
...((((((........)))).))..	chr20:61920427-61920701(+)$1	1	207	233	14.8056
...((((((........)).))))..	chr1:226034037-226034272(-)$1	1	75	101	15.5690
(((.(((((........))))).)))	chrX:128657223-128657460(-)$1	1	98	124	15.4659
(((((((.(........).))))...	chr5:612375-612621(+)$1	1	87	113	16.1433
..(((((((........)))))))..	chr17:27401576-27401862(-)$1	1	191	217	16.8047
((.....((........))...))))	chr11:62283650-62283894(-)$1	1	213	239	14.9359
((((.((((........)))))))..	chr3:79068164-79068442(-)$1	1	174	200	16.3752
))))(((((........))))).(((	chr13:77765728-77765993(-)$1	1	154	180	13.9829
((((...((........))...))).	chr9:117072851-117073094(+)$1	1	86	112	16.5043
.(((((..(........)..))))).	chr12:56668685-56669003(-)$1	1	263	289	14.2801
..(((.(((........))))))..)	chr2:238482988-238483269(-)$1	1	200	226	16.6743
((...((((........))))...))	chr4:184169852-184170110(+)$1	1	221	247	16.1898
))(((.(((........))).)))..	chr1:1322399-1322627(-)$1	1	54	80	15.2633
(((.(((((........)))))))))	chr17:37617814-37618089(+)$1	1	205	231	14.8204
(((((.(((........))).)).))	chr16:1819635-1819884(+)$1	1	153	179	16.0563
(..((.(((........)))))..))	chr10:18948362-18948676(+)$1	1	276	302	15.7802
(((((((((........)))))))))	chr19:10802325-10802604(+)$1	1	196	222	16.4192
(((((((((........))))))).)	chr12:26985716-26986036(-)$1	1	161	187	15.9084
....((.((........)).))))))	chr16:24802265-24802563(+)$1	1	128	154	14.8282
((.(((.((........))))).)))	chr6:31931161-31931437(+)$1	1	226	252	16.1576
(((((((((........))).)))))	chr17:62499449-62499719(-)$1	1	177	203	15.4970
((....(((........)))..))).	chr1:110527523-110527777(+)$1	1	28	54	16.9250
(((((((((........)))))))))	chr17:27447645-27447870(-)$1	1	35	61	16.4192
...(.((((........)))))))))	chr2:219602207-219602494(+)$1	1	167	193	15.7951
)(((.((((........)))))))))	chr6:158734145-158734424(+)$1	1	249	275	13.9597
((.((((((........))))))...	chr12:112757277-112757603(-)$1	1	49	75	15.3558
(...((.((........)).))...)	chr17:36884951-36885233(+)$1	1	22	48	15.5252
.(((.((((........))))))).)	chr11:85779682-85780009(-)$1	1	245	271	16.3171
.((((((((........))).)))))	chr19:2231960-2232208(+)$1	1	64	90	16.2760
(((((((((........))).)))))	chr15:65158152-65158432(+)$1	1	234	260	14.9265
(((((.(((........))).)))))	chr15:34673336-34673557(-)$1	1	82	108	16.2321
.(..(((((........))))).).)	chr17:2283548-2283809(+)$1	1	159	185	15.8793
(((...(((........)))))))))	chr15:93568185-93568443(+)$1	1	129	155	16.0282
((((...((........)))))))..	chr15:91462931-91463242(+)$1	1	52	78	15.4956
((((...((........)).))))))	chr3:9876682-9876938(+)$1	1	34	60	16.3458
((.((((((........)))))).))	chr20:61917662-61917894(+)$1	1	42	68	15.0954
(((..((((........)))).))))	chr2:20251167-20251499(-)$1	1	186	212	15.6889
(((..((((........)))))))).	chr1:6695429-6695693(-)$1	1	162	188	15.7487
.(((((.((........)).))))))	chr16:2156746-2157011(-)$1	1	95	121	15.4572
((..(((.(........).)))....	chr5:154194521-154194783(+)$1	1	134	160	16.5953
(((((.(((........))).)))))	chr17:36925682-36925969(-)$1	1	142	168	16.2321
(.((((.((........)).))))..	chr2:118676692-118676973(-)$1	1	170	196	15.0328
.((((.(((........)))...)))	chr7:151944886-151945147(-)$1	1	179	205	16.6149
(((...(((........)))..))))	chr6:64394111-64394360(+)$1	1	172	198	17.1594
((((((..(........)..))))))	chr3:197024776-197025033(-)$1	1	166	192	15.9547
.((((.(((........))).)))))	chr16:24834729-24834994(+)$1	1	191	217	16.2389
((...((((........))))...))	chr20:39803729-39803986(+)$1	1	173	199	16.5218
..(((((((........))))))).)	chr3:42687280-42687573(+)$1	1	62	88	16.6985

#PSSM
c : 0.16	d : 0.15	[ : 0.11	g : 0.09	e : 0.08	" : 0.06	$ : 0.05	h : 0.05	f : 0.05	i : 0.05	# : 0.03	! : 0.03	& : 0.01	b : 0.01	= : 0.01	
d : 0.18	c : 0.18	e : 0.13	g : 0.06	f : 0.05	$ : 0.05	h : 0.05	[ : 0.05	" : 0.05	i : 0.05	! : 0.05	# : 0.03	b : 0.01	a : 0.01	= : 0.01	
g : 0.16	d : 0.15	c : 0.13	e : 0.09	" : 0.06	f : 0.05	# : 0.05	$ : 0.05	i : 0.05	! : 0.05	[ : 0.05	h : 0.03	b : 0.03	= : 0.01	
g : 0.16	d : 0.11	c : 0.11	" : 0.09	e : 0.09	f : 0.08	! : 0.08	b : 0.06	h : 0.03	[ : 0.03	i : 0.03	# : 0.03	$ : 0.01	a : 0.01	
e : 0.15	g : 0.13	" : 0.13	[ : 0.09	d : 0.09	f : 0.08	b : 0.08	c : 0.06	! : 0.05	h : 0.03	i : 0.03	$ : 0.01	# : 0.01	
d : 0.23	[ : 0.16	g : 0.11	e : 0.11	" : 0.09	f : 0.08	c : 0.05	i : 0.03	b : 0.03	! : 0.01	$ : 0.01	# : 0.01	h : 0.01	
c : 0.31	d : 0.21	g : 0.09	[ : 0.08	f : 0.06	e : 0.06	! : 0.05	" : 0.05	i : 0.03	$ : 0.01	
c : 0.30	d : 0.18	b : 0.18	g : 0.09	e : 0.06	[ : 0.05	f : 0.05	! : 0.03	i : 0.03	
c : 0.28	d : 0.18	b : 0.18	a : 0.09	g : 0.09	e : 0.06	f : 0.05	i : 0.03	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.28	d : 0.18	b : 0.18	a : 0.09	g : 0.09	e : 0.06	f : 0.05	i : 0.03	
c : 0.28	d : 0.18	b : 0.18	g : 0.09	] : 0.06	e : 0.06	f : 0.05	2 : 0.03	i : 0.03	
c : 0.33	d : 0.21	g : 0.09	] : 0.09	e : 0.08	f : 0.06	3 : 0.03	2 : 0.03	i : 0.03	
d : 0.24	] : 0.16	g : 0.15	e : 0.11	f : 0.08	c : 0.06	3 : 0.05	b : 0.05	i : 0.03	2 : 0.03	
e : 0.16	g : 0.15	c : 0.13	d : 0.11	f : 0.09	3 : 0.08	b : 0.06	2 : 0.05	] : 0.05	h : 0.03	i : 0.03	a : 0.01	
d : 0.16	g : 0.15	c : 0.11	e : 0.11	f : 0.09	] : 0.06	3 : 0.06	b : 0.05	h : 0.03	2 : 0.03	i : 0.03	= : 0.03	: : 0.01	4 : 0.01	
d : 0.16	g : 0.15	c : 0.13	e : 0.11	3 : 0.08	f : 0.06	b : 0.05	] : 0.05	h : 0.03	4 : 0.03	2 : 0.03	i : 0.03	= : 0.03	a : 0.01	
d : 0.16	c : 0.11	e : 0.09	4 : 0.08	] : 0.08	2 : 0.08	f : 0.06	g : 0.06	3 : 0.05	h : 0.03	i : 0.03	= : 0.03	7 : 0.01	b : 0.01	5 : 0.01	: : 0.01	E : 0.01	
d : 0.18	c : 0.11	4 : 0.08	] : 0.08	g : 0.06	2 : 0.06	f : 0.06	e : 0.06	3 : 0.05	h : 0.05	i : 0.03	= : 0.03	7 : 0.01	5 : 0.01	8 : 0.01	b : 0.01	: : 0.01	E : 0.01	

#score	946.6320827429108
#seq	60
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF264WFT_CPSF6_UTR_m3_run1.txt

#BEAR
[ddddqqqqqqqqdddd	chr18:55282772-55282994(-)$1	222	164	181	14.6382
gggggqqqqqqqqgggg	chr3:167437748-167438081(-)$1	333	45	62	13.5075
[ddddqqqqqqqqdddd	chr12:76444236-76444452(-)$1	216	4	21	14.6382
gggggqqqqqqqqgggg	chr3:42687399-42687668(+)$1	269	81	98	13.5075
eeeeeqqqqqqqqeeee	chr2:187364803-187365102(+)$1	299	208	225	13.8839
gggggqqqqqqqqgggg	chr7:64450734-64451011(-)$1	277	194	211	13.5075
""cccqqqqqqqqccc2	chr6:16146869-16147128(+)$1	259	158	175	13.5442
fffffqqqqqqqqffff	chr18:9959328-9959658(+)$1	330	92	109	12.5544
h[cccqqqqqqqqccc]	chr20:5525014-5525311(-)$1	297	7	24	13.4446
fffffqqqqqqqqffff	chr7:117831866-117832217(+)$1	351	213	230	12.5544
eee[aqqqqqqqqa]ee	chr12:111157622-111157910(-)$1	288	245	262	13.5517
"ddddqqqqqqqqdddd	chr3:184428330-184428629(-)$1	299	132	149	14.6214
fffffqqqqqqqqffff	chr12:69663545-69663824(+)$1	279	4	21	12.5544
eeeeeqqqqqqqqeeee	chr7:99173910-99174159(+)$1	249	0	17	13.8839
#ddddqqqqqqqqdddd	chr1:201938579-201938867(+)$1	288	129	146	14.5867
c[cccqqqqqqqqcccc	chr5:158584772-158585100(-)$1	328	297	314	13.6289
eeeeeqqqqqqqqeeee	chr12:69667921-69668192(+)$1	271	14	31	13.8839
!!cccqqqqqqqqcccg	chr21:38887253-38887569(+)$1	316	62	79	13.9051
e!!bbqqqqqqqqbb33	chr1:31404282-31404594(-)$1	312	204	221	12.5872
:ddddqqqqqqqqdddd	chr12:104341346-104341605(+)$1	259	173	190	13.6191
eee[aqqqqqqqqa]ee	chr19:6414389-6414623(-)$1	234	148	165	13.5517
d!!bbqqqqqqqqbb22	chr3:142761906-142762188(+)$1	282	24	41	12.0126
Fddddqqqqqqqqdddd	chr8:124383807-124384040(-)$1	233	8	25	14.1472
:ddddqqqqqqqqdddd	chr17:48822999-48823382(+)$1	383	294	311	13.6191
eddddqqqqqqqqdddd	chr11:34120386-34120612(+)$1	226	84	101	14.4850
eeeeeqqqqqqqqeeee	chr7:99173784-99174099(+)$1	315	126	143	13.8839
"ddddqqqqqqqqdddd	chr9:100777607-100777815(+)$1	208	120	137	14.6214
!!cccqqqqqqqqccc5	chr1:117644924-117645240(+)$1	316	58	75	13.0208
:ddddqqqqqqqqdddd	chr14:58737551-58737821(+)$1	270	145	162	13.6191
eeeeeqqqqqqqqeeee	chr21:15857855-15858129(-)$1	274	34	51	13.8839
eeeeeqqqqqqqqeeee	chr7:150841057-150841326(+)$1	269	39	56	13.8839
iiiiiqqqqqqqqiiii	chr3:44686574-44686827(+)$1	253	17	34	13.4137
FFcccqqqqqqqqccc:	chr14:102551044-102551264(-)$1	220	50	67	11.8923
ggcccqqqqqqqqccc]	chr17:30697162-30697484(+)$1	322	288	305	13.7057
ff[bbqqqqqqqqbb]f	chr4:6710115-6710377(-)$1	262	189	206	12.1987
:ddddqqqqqqqqdddd	chr1:155882761-155883039(-)$1	278	55	72	13.6191
iiiiiqqqqqqqqiiii	chr1:197053267-197053590(-)$1	323	231	248	13.4137
eeeeeqqqqqqqqeeee	chr3:171318568-171318896(-)$1	328	281	298	13.8839
"ddddqqqqqqqqdddd	chr1:16891197-16891510(-)$1	313	49	66	14.6214
c"""aqqqqqqqqa333	chr15:69072327-69072582(-)$1	255	117	134	12.8740
e!!bbqqqqqqqqbb22	chr4:73968045-73968367(-)$1	322	243	260	12.2026
eeeeeqqqqqqqqeeee	chr19:6414360-6414589(-)$1	229	159	176	13.8839
$ddddqqqqqqqqdddd	chrX:64737892-64738188(-)$1	296	226	243	14.3897
fffffqqqqqqqqffff	chr5:134195197-134195491(+)$1	294	177	194	12.5544
gggggqqqqqqqqgggg	chr11:34120412-34120672(+)$1	260	148	165	13.5075
gggggqqqqqqqqgggg	chr1:6283610-6283908(-)$1	298	188	205	13.5075
[ddddqqqqqqqqdddd	chr9:131456821-131457052(+)$1	231	163	180	14.6382
fddddqqqqqqqqdddd	chr2:170668310-170668599(+)$1	289	215	232	14.4033
:ddddqqqqqqqqdddd	chr17:43225810-43226087(+)$1	277	29	46	13.6191
ggg[aqqqqqqqqa]gg	chr2:232577052-232577258(+)$1	206	54	71	13.3522
"ddddqqqqqqqqdddd	chr12:56307467-56307830(-)$1	363	104	121	14.6214
eeeeeqqqqqqqqeeee	chr3:25653920-25654194(-)$1	274	46	63	13.8839
gddddqqqqqqqqdddd	chr16:4909760-4910073(+)$1	313	91	108	14.5219
=====qqqqqqqq====	chr14:21927532-21927848(-)$1	316	99	116	13.6225
fffffqqqqqqqqffff	chr2:187359869-187360133(+)$1	264	13	30	12.5544
iicccqqqqqqqqcccD	chr19:19101610-19101880(-)$1	270	232	249	12.8558
"ddddqqqqqqqqdddd	chr1:150198839-150199108(-)$1	269	151	168	14.6214
[ddddqqqqqqqqdddd	chr3:156865628-156865909(-)$1	281	98	115	14.6382
"ddddqqqqqqqqdddd	chr9:100777615-100777852(+)$1	237	112	129	14.6214
c[cccqqqqqqqqccc]	chr21:34931090-34931350(+)$1	260	46	63	13.6477
"""bbqqqqqqqqbb]d	chr14:102551186-102551425(-)$1	239	190	207	12.6372
:ddddqqqqqqqqdddd	chr1:39329063-39329375(-)$1	312	289	306	13.6191
#ddddqqqqqqqqdddd	chrX:150577611-150577935(+)$1	324	156	173	14.5867
eeeeeqqqqqqqqeeee	chr5:87490897-87491251(-)$1	354	238	255	13.8839
gggggqqqqqqqqgggg	chr4:54325439-54325740(+)$1	301	252	269	13.5075
cddddqqqqqqqqdddd	chr8:101930825-101931082(-)$1	257	200	217	14.4321
eeeeeqqqqqqqqeeee	chr2:223806722-223807025(+)$1	303	212	229	13.8839
[ddddqqqqqqqqdddd	chr9:116170939-116171205(-)$1	266	232	249	14.6382
eeeeeqqqqqqqqeeee	chr4:1950351-1950634(+)$1	283	198	215	13.8839

#otherMatches

#Seq PSSM
UCAGAUCAUUAUUUCUG	chr18:55282772-55282994(-)$1	222	164	181	14.6382
CUUUUAUCACCAAAAAA	chr3:167437748-167438081(-)$1	333	45	62	13.5075
UUCCUUUAAAAAUAGGA	chr12:76444236-76444452(-)$1	216	4	21	14.6382
CAAAUUAUAUCUUAUUU	chr3:42687399-42687668(+)$1	269	81	98	13.5075
UAAGUAAAGGUAAACUU	chr2:187364803-187365102(+)$1	299	208	225	13.8839
cccugucuuuguucagg	chr7:64450734-64451011(-)$1	277	194	211	13.5075
UAUUAUAAACUAUUAAA	chr6:16146869-16147128(+)$1	259	158	175	13.5442
CAUUCCUAAACAAGAGU	chr18:9959328-9959658(+)$1	330	92	109	12.5544
guuuugugacucugaau	chr20:5525014-5525311(-)$1	297	7	24	13.4446
CUGUAAAUCUUUGUACA	chr7:117831866-117832217(+)$1	351	213	230	12.5544
GUUGAUGGCAUAUUGAA	chr12:111157622-111157910(-)$1	288	245	262	13.5517
UCUACUUUUUCCUGUAG	chr3:184428330-184428629(-)$1	299	132	149	14.6214
GGUUAUAUACAUUUGGC	chr12:69663545-69663824(+)$1	279	4	21	12.5544
ACAUGUAUACCCUUAUG	chr7:99173910-99174159(+)$1	249	0	17	13.8839
AGAACGAGUUGUGGUUC	chr1:201938579-201938867(+)$1	288	129	146	14.5867
AACUGAAUCAAAACAGU	chr5:158584772-158585100(-)$1	328	297	314	13.6289
AGCUUCAAUUAAAAAGC	chr12:69667921-69668192(+)$1	271	14	31	13.8839
AUUGUAAACAUAAACAG	chr21:38887253-38887569(+)$1	316	62	79	13.9051
UGAUCUUUAUUUUGAAA	chr1:31404282-31404594(-)$1	312	204	221	12.5872
UGGAUGCCCCCUAAUCC	chr12:104341346-104341605(+)$1	259	173	190	13.6191
UGAUCUCUGGAUUGUUC	chr19:6414389-6414623(-)$1	234	148	165	13.5517
AUACAAUGUAUUCUGCU	chr3:142761906-142762188(+)$1	282	24	41	12.0126
CGUUCAAAGUACAGAAC	chr8:124383807-124384040(-)$1	233	8	25	14.1472
ACAUCAGACAGAAGAUG	chr17:48822999-48823382(+)$1	383	294	311	13.6191
GCUAGAGUGUAcacuag	chr11:34120386-34120612(+)$1	226	84	101	14.4850
ACAUGUAUACCCUUAUG	chr7:99173784-99174099(+)$1	315	126	143	13.8839
UGCAGAAACAGAACUGU	chr9:100777607-100777815(+)$1	208	120	137	14.6214
GCAGGCAGUUCUUCCUC	chr1:117644924-117645240(+)$1	316	58	75	13.0208
AAGCAGAGAAAUAUGCU	chr14:58737551-58737821(+)$1	270	145	162	13.6191
GUACAUAAAAUUUUGUA	chr21:15857855-15858129(-)$1	274	34	51	13.8839
CUGUGGGAACAGACACA	chr7:150841057-150841326(+)$1	269	39	56	13.8839
auggccaugugauguua	chr3:44686574-44686827(+)$1	253	17	34	13.4137
GUUCUgaugaggaagaa	chr14:102551044-102551264(-)$1	220	50	67	11.8923
UUCAUAGUUACCAAUGC	chr17:30697162-30697484(+)$1	322	288	305	13.7057
GGAAAUAUAACUUUUGU	chr4:6710115-6710377(-)$1	262	189	206	12.1987
UGAACCAGGAAUAGUUU	chr1:155882761-155883039(-)$1	278	55	72	13.6191
AAAAUCUGACUUUGUUU	chr1:197053267-197053590(-)$1	323	231	248	13.4137
UCUUAGUCUCAUAUAAG	chr3:171318568-171318896(-)$1	328	281	298	13.8839
GUAGGGGAAUCAGCUUA	chr1:16891197-16891510(-)$1	313	49	66	14.6214
GAAGCGAAAACGAGAAC	chr15:69072327-69072582(-)$1	255	117	134	12.8740
UGCUCAAGAAAAAGAAA	chr4:73968045-73968367(-)$1	322	243	260	12.2026
GCCCUCCGGAGACAGGG	chr19:6414360-6414589(-)$1	229	159	176	13.8839
UCUCUACAGGGCAAGAG	chrX:64737892-64738188(-)$1	296	226	243	14.3897
ACAUCAUCAUAUGGAUG	chr5:134195197-134195491(+)$1	294	177	194	12.5544
gccuggcacauaguagg	chr11:34120412-34120672(+)$1	260	148	165	13.5075
gaacaaugucaaauguu	chr1:6283610-6283908(-)$1	298	188	205	13.5075
UCUCCAGUCCCUGGGAG	chr9:131456821-131457052(+)$1	231	163	180	14.6382
UUAGUACAAACUAACUA	chr2:170668310-170668599(+)$1	289	215	232	14.4033
ACAGCAGUUGGAAGUUg	chr17:43225810-43226087(+)$1	277	29	46	13.6191
ACAGUAGGAGGGAAGUG	chr2:232577052-232577258(+)$1	206	54	71	13.3522
cuagaauguauacucua	chr12:56307467-56307830(-)$1	363	104	121	14.6214
CAAUUAAAGGUAAAGUU	chr3:25653920-25654194(-)$1	274	46	63	13.8839
UCUUUAAUUCUCAGAAG	chr16:4909760-4910073(+)$1	313	91	108	14.5219
UGGAAUCUUGUCUUUCC	chr14:21927532-21927848(-)$1	316	99	116	13.6225
AUGAUUUUUAGAUAUCA	chr2:187359869-187360133(+)$1	264	13	30	12.5544
ACGCAGAUGGGAGUGCA	chr19:19101610-19101880(-)$1	270	232	249	12.8558
AUGAAAGAAGAAAUUCA	chr1:150198839-150199108(-)$1	269	151	168	14.6214
CAGGUUCAAUUGUACUU	chr3:156865628-156865909(-)$1	281	98	115	14.6382
UGCAGAAACAGAACUGU	chr9:100777615-100777852(+)$1	237	112	129	14.6214
guuuguauuauaucagu	chr21:34931090-34931350(+)$1	260	46	63	13.6477
AACCUGAAAUUGAAGAU	chr14:102551186-102551425(-)$1	239	190	207	12.6372
CUGUCGUUUUAUAGACA	chr1:39329063-39329375(-)$1	312	289	306	13.6191
CUAUAUUGUAGCUUGUA	chrX:150577611-150577935(+)$1	324	156	173	14.5867
GCAAUUUAUUUGUGUUG	chr5:87490897-87491251(-)$1	354	238	255	13.8839
UUAAGAAAUUUACCUUA	chr4:54325439-54325740(+)$1	301	252	269	13.5075
CCUCAGAUUAAAUUGGG	chr8:101930825-101931082(-)$1	257	200	217	14.4321
UAAGAAGUUGAGAUCUU	chr2:223806722-223807025(+)$1	303	212	229	13.8839
AUCAGAAUAAAAACUGA	chr9:116170939-116171205(-)$1	266	232	249	14.6382
AGGACUGCUUUGUGUUU	chr4:1950351-1950634(+)$1	283	198	215	13.8839

#DB
.((((........))))	chr18:55282772-55282994(-)$1	1	164	181	14.6382
(((((........))))	chr3:167437748-167438081(-)$1	1	45	62	13.5075
.((((........))))	chr12:76444236-76444452(-)$1	1	4	21	14.6382
(((((........))))	chr3:42687399-42687668(+)$1	1	81	98	13.5075
(((((........))))	chr2:187364803-187365102(+)$1	1	208	225	13.8839
(((((........))))	chr7:64450734-64451011(-)$1	1	194	211	13.5075
..(((........))).	chr6:16146869-16147128(+)$1	1	158	175	13.5442
(((((........))))	chr18:9959328-9959658(+)$1	1	92	109	12.5544
(.(((........))).	chr20:5525014-5525311(-)$1	1	7	24	13.4446
(((((........))))	chr7:117831866-117832217(+)$1	1	213	230	12.5544
(((.(........).))	chr12:111157622-111157910(-)$1	1	245	262	13.5517
.((((........))))	chr3:184428330-184428629(-)$1	1	132	149	14.6214
(((((........))))	chr12:69663545-69663824(+)$1	1	4	21	12.5544
(((((........))))	chr7:99173910-99174159(+)$1	1	0	17	13.8839
.((((........))))	chr1:201938579-201938867(+)$1	1	129	146	14.5867
(.(((........))))	chr5:158584772-158585100(-)$1	1	297	314	13.6289
(((((........))))	chr12:69667921-69668192(+)$1	1	14	31	13.8839
..(((........))))	chr21:38887253-38887569(+)$1	1	62	79	13.9051
(..((........))..	chr1:31404282-31404594(-)$1	1	204	221	12.5872
.((((........))))	chr12:104341346-104341605(+)$1	1	173	190	13.6191
(((.(........).))	chr19:6414389-6414623(-)$1	1	148	165	13.5517
(..((........))..	chr3:142761906-142762188(+)$1	1	24	41	12.0126
(((((........))))	chr8:124383807-124384040(-)$1	1	8	25	14.1472
.((((........))))	chr17:48822999-48823382(+)$1	1	294	311	13.6191
)((((........))))	chr11:34120386-34120612(+)$1	1	84	101	14.4850
(((((........))))	chr7:99173784-99174099(+)$1	1	126	143	13.8839
.((((........))))	chr9:100777607-100777815(+)$1	1	120	137	14.6214
..(((........))).	chr1:117644924-117645240(+)$1	1	58	75	13.0208
.((((........))))	chr14:58737551-58737821(+)$1	1	145	162	13.6191
(((((........))))	chr21:15857855-15858129(-)$1	1	34	51	13.8839
(((((........))))	chr7:150841057-150841326(+)$1	1	39	56	13.8839
(((((........))))	chr3:44686574-44686827(+)$1	1	17	34	13.4137
(((((........))).	chr14:102551044-102551264(-)$1	1	50	67	11.8923
(((((........))).	chr17:30697162-30697484(+)$1	1	288	305	13.7057
((.((........)).)	chr4:6710115-6710377(-)$1	1	189	206	12.1987
.((((........))))	chr1:155882761-155883039(-)$1	1	55	72	13.6191
(((((........))))	chr1:197053267-197053590(-)$1	1	231	248	13.4137
(((((........))))	chr3:171318568-171318896(-)$1	1	281	298	13.8839
.((((........))))	chr1:16891197-16891510(-)$1	1	49	66	14.6214
(...(........)...	chr15:69072327-69072582(-)$1	1	117	134	12.8740
(..((........))..	chr4:73968045-73968367(-)$1	1	243	260	12.2026
(((((........))))	chr19:6414360-6414589(-)$1	1	159	176	13.8839
.((((........))))	chrX:64737892-64738188(-)$1	1	226	243	14.3897
(((((........))))	chr5:134195197-134195491(+)$1	1	177	194	12.5544
(((((........))))	chr11:34120412-34120672(+)$1	1	148	165	13.5075
(((((........))))	chr1:6283610-6283908(-)$1	1	188	205	13.5075
.((((........))))	chr9:131456821-131457052(+)$1	1	163	180	14.6382
(((((........))))	chr2:170668310-170668599(+)$1	1	215	232	14.4033
.((((........))))	chr17:43225810-43226087(+)$1	1	29	46	13.6191
(((.(........).))	chr2:232577052-232577258(+)$1	1	54	71	13.3522
.((((........))))	chr12:56307467-56307830(-)$1	1	104	121	14.6214
(((((........))))	chr3:25653920-25654194(-)$1	1	46	63	13.8839
)((((........))))	chr16:4909760-4910073(+)$1	1	91	108	14.5219
(((((........))))	chr14:21927532-21927848(-)$1	1	99	116	13.6225
(((((........))))	chr2:187359869-187360133(+)$1	1	13	30	12.5544
))(((........))))	chr19:19101610-19101880(-)$1	1	232	249	12.8558
.((((........))))	chr1:150198839-150199108(-)$1	1	151	168	14.6214
.((((........))))	chr3:156865628-156865909(-)$1	1	98	115	14.6382
.((((........))))	chr9:100777615-100777852(+)$1	1	112	129	14.6214
(.(((........))).	chr21:34931090-34931350(+)$1	1	46	63	13.6477
...((........)).)	chr14:102551186-102551425(-)$1	1	190	207	12.6372
.((((........))))	chr1:39329063-39329375(-)$1	1	289	306	13.6191
.((((........))))	chrX:150577611-150577935(+)$1	1	156	173	14.5867
(((((........))))	chr5:87490897-87491251(-)$1	1	238	255	13.8839
(((((........))))	chr4:54325439-54325740(+)$1	1	252	269	13.5075
)((((........))))	chr8:101930825-101931082(-)$1	1	200	217	14.4321
(((((........))))	chr2:223806722-223807025(+)$1	1	212	229	13.8839
.((((........))))	chr9:116170939-116171205(-)$1	1	232	249	14.6382
(((((........))))	chr4:1950351-1950634(+)$1	1	198	215	13.8839

#PSSM
e : 0.24	g : 0.13	" : 0.11	f : 0.10	: : 0.08	[ : 0.07	c : 0.05	i : 0.04	# : 0.02	! : 0.02	F : 0.02	h : 0.01	d : 0.01	$ : 0.01	= : 0.01	
d : 0.36	e : 0.20	g : 0.11	f : 0.08	! : 0.07	" : 0.04	[ : 0.04	i : 0.04	F : 0.01	= : 0.01	
d : 0.36	e : 0.20	c : 0.13	g : 0.10	f : 0.07	! : 0.04	i : 0.02	" : 0.02	[ : 0.01	= : 0.01	
d : 0.36	e : 0.17	c : 0.13	g : 0.08	f : 0.07	b : 0.07	[ : 0.04	i : 0.02	" : 0.01	= : 0.01	
d : 0.36	e : 0.17	c : 0.13	g : 0.08	f : 0.07	b : 0.07	a : 0.05	i : 0.02	= : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
d : 0.36	e : 0.17	c : 0.13	g : 0.08	f : 0.07	b : 0.07	a : 0.05	i : 0.02	= : 0.01	
d : 0.36	e : 0.17	c : 0.13	g : 0.08	f : 0.07	b : 0.07	] : 0.04	i : 0.02	3 : 0.01	= : 0.01	
d : 0.36	e : 0.20	c : 0.13	g : 0.10	f : 0.07	3 : 0.02	2 : 0.02	i : 0.02	] : 0.02	= : 0.01	
d : 0.37	e : 0.20	g : 0.11	f : 0.08	2 : 0.04	] : 0.04	3 : 0.02	i : 0.02	c : 0.01	5 : 0.01	: : 0.01	= : 0.01	D : 0.01	

#score	943.676912733087
#seq	69
#width	17
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF926QBW_UTP18_CDS_m1_run1.txt

#BEAR
dbbiiiiiiiii[bbrrrrrrrrrbbiiiiiiiii]bbe	chr9:116994002-116994228(+)$1	226	133	172	16.3561
!ggggggg!!dddd[aqqqqqqqqadddd22ggggggg2	chr2:232327809-232328119(-)$1	310	234	273	18.7841
ggbb!!ccc"""ddddqqqqqqqqdddd22cccbb]ggg	chr8:144940558-144940891(-)$1	333	210	249	18.6938
!dddd[ccc[ccc[bbqqqqqqqqbb333ccc]ccc]dd	chr20:2819569-2819828(-)$1	259	147	186	19.9078
eeee[cccdddd"""cccooooooccc333dddd]ccce	chr6:26055915-26056141(-)$1	226	57	96	14.9484
========[ccc[ccclllcccccc==========22a]	chr7:2394448-2394708(+)$1	260	19	58	15.2728
c:dddd"""ccc[cccqqqqqqqqccc4444ccc333dd	chr9:116997816-116998031(+)$1	215	113	152	20.3950

#otherMatches

#Seq PSSM
AAGGUGAUAAGGUGAUCUGAAUACUCCCUUAUUGCACUG	chr9:116994002-116994228(+)$1	226	133	172	16.3561
AUUAUGUUAAAACUACAAAAUGGAGAGUUAAGACAUGAA	chr2:232327809-232328119(-)$1	310	234	273	18.7841
GGCCAUGUGGAAGGGCGUGCUGCGGCCCGGCACGGCCCU	chr8:144940558-144940891(-)$1	333	210	249	18.6938
GGGCGAGCUGCACAACGGGACACAGUAUCGUGAGGUCCG	chr20:2819569-2819828(-)$1	259	147	186	19.9078
GGCUGUGAAGCCCAAGGCCGCUAAGCCCAAGGUUGUCAA	chr6:26055915-26056141(-)$1	226	57	96	14.9484
GGGCUGUAGCCGUCGCGGCGCGCGGUGCGGCCUGGGAGA	chr7:2394448-2394708(+)$1	260	19	58	15.2728
AAGGUAAUUGCAUGAGAUUUUCCCCUCCCCCUGCCCCUG	chr9:116997816-116998031(+)$1	215	113	152	20.3950

#DB
)(((((((((((.((.........))))))))))).))(	chr9:116994002-116994228(+)$1	1	133	172	16.3561
.(((((((..((((.(........)))))..))))))).	chr2:232327809-232328119(-)$1	1	234	273	18.7841
((((..(((...((((........))))..))))).)))	chr8:144940558-144940891(-)$1	1	210	249	18.6938
.((((.(((.(((.((........))...))).))).))	chr20:2819569-2819828(-)$1	1	147	186	19.9078
((((.(((((((...(((......)))...)))).))))	chr6:26055915-26056141(-)$1	1	57	96	14.9484
((((((((.(((.(((...))))))))))))))))..).	chr7:2394448-2394708(+)$1	1	19	58	15.2728
).((((...(((.(((........)))....)))...))	chr9:116997816-116998031(+)$1	1	113	152	20.3950

#PSSM
! : 0.28	d : 0.14	g : 0.14	e : 0.14	= : 0.14	c : 0.14	
g : 0.28	b : 0.14	d : 0.14	e : 0.14	= : 0.14	: : 0.14	
b : 0.28	d : 0.28	g : 0.14	e : 0.14	= : 0.14	
d : 0.28	i : 0.14	g : 0.14	b : 0.14	e : 0.14	= : 0.14	
d : 0.28	i : 0.14	g : 0.14	! : 0.14	[ : 0.14	= : 0.14	
i : 0.14	g : 0.14	! : 0.14	[ : 0.14	c : 0.14	= : 0.14	d : 0.14	
c : 0.42	i : 0.14	g : 0.14	= : 0.14	" : 0.14	
c : 0.42	i : 0.14	g : 0.14	= : 0.14	" : 0.14	
c : 0.28	i : 0.14	! : 0.14	d : 0.14	[ : 0.14	" : 0.14	
c : 0.28	i : 0.14	! : 0.14	" : 0.14	[ : 0.14	d : 0.14	
c : 0.42	d : 0.28	i : 0.14	" : 0.14	
c : 0.42	d : 0.28	i : 0.14	" : 0.14	
[ : 0.42	d : 0.28	c : 0.14	" : 0.14	
d : 0.28	c : 0.28	b : 0.14	[ : 0.14	" : 0.14	
b : 0.28	c : 0.28	[ : 0.14	d : 0.14	" : 0.14	
c : 0.42	r : 0.14	a : 0.14	d : 0.14	b : 0.14	
q : 0.57	r : 0.14	c : 0.14	l : 0.14	
q : 0.57	r : 0.14	c : 0.14	l : 0.14	
q : 0.57	r : 0.14	o : 0.14	l : 0.14	
q : 0.57	r : 0.14	o : 0.14	c : 0.14	
q : 0.57	r : 0.14	o : 0.14	c : 0.14	
q : 0.57	r : 0.14	o : 0.14	c : 0.14	
q : 0.57	r : 0.14	o : 0.14	c : 0.14	
q : 0.57	r : 0.14	o : 0.14	c : 0.14	
c : 0.42	b : 0.28	a : 0.14	d : 0.14	
b : 0.28	d : 0.28	c : 0.28	= : 0.14	
d : 0.28	c : 0.28	i : 0.14	3 : 0.14	= : 0.14	
d : 0.28	3 : 0.28	i : 0.14	= : 0.14	4 : 0.14	
3 : 0.28	i : 0.14	d : 0.14	2 : 0.14	= : 0.14	4 : 0.14	
2 : 0.28	i : 0.14	c : 0.14	3 : 0.14	= : 0.14	4 : 0.14	
c : 0.28	i : 0.14	2 : 0.14	d : 0.14	= : 0.14	4 : 0.14	
c : 0.42	i : 0.14	g : 0.14	d : 0.14	= : 0.14	
c : 0.28	i : 0.14	g : 0.14	] : 0.14	d : 0.14	= : 0.14	
c : 0.28	i : 0.14	g : 0.14	b : 0.14	d : 0.14	= : 0.14	
i : 0.14	g : 0.14	b : 0.14	c : 0.14	] : 0.14	= : 0.14	3 : 0.14	
] : 0.28	c : 0.28	g : 0.14	2 : 0.14	3 : 0.14	
g : 0.28	b : 0.14	] : 0.14	c : 0.14	2 : 0.14	3 : 0.14	
g : 0.28	d : 0.28	b : 0.14	c : 0.14	a : 0.14	
e : 0.28	d : 0.28	2 : 0.14	g : 0.14	] : 0.14	

#score	124.35853930254294
#seq	7
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF263BIJ_LARP4_UTR_m3_run2.txt

#BEAR
ggggggnnnnnggggg	chr1:155106879-155107145(+)$1	266	165	181	10.6534
ffffffnnnnnfffff	chr15:75931590-75931850(-)$1	260	58	74	10.0807
!!ddddnnnnnddddd	chr3:186338667-186338880(+)$1	213	5	21	9.3553
ffff[annnnna]fff	chr10:73576271-73576498(-)$1	227	204	220	10.3491
gggg[aooooooa]gg	chr17:42430680-42430973(-)$1	293	133	149	6.5089
[eeeeennnnneeeee	chr12:6979844-6980076(+)$1	232	59	75	9.5822
f[ddddnnnnnddddf	chr11:122928299-122928569(-)$1	270	90	106	9.5353
ggggggnnnnnggggg	chr12:57606710-57606968(+)$1	258	188	204	10.6534
ggg[bbnnnnnbb]gg	chr14:102516930-102517205(+)$1	275	253	269	10.1458
ggggggoooooogggg	chr11:64532026-64532256(-)$1	230	109	125	6.5994
ffffffnnnnnfffff	chr17:79861195-79861479(-)$1	284	35	51	10.0807
ggggggoooooogggg	chr20:44054455-44054726(+)$1	271	118	134	6.5994
e!!cccnnnnnccc22	chr6:31321694-31321958(-)$1	264	242	258	9.6299
ggggggoooooogggg	chr6:29913232-29913451(+)$1	219	132	148	6.5994
a[ddddnnnnndddd]	chr12:53693028-53693312(+)$1	284	188	204	9.4772
dd[cccnnnnnccc]d	chr2:70508644-70508898(-)$1	254	223	239	9.6934
ccc[bbnnnnnbb]cc	chr8:144103053-144103352(+)$1	299	91	107	9.6560
"""cccnnnnnccc22	chr4:155506459-155506676(-)$1	217	111	127	9.3558
ddd[bbnnnnnbbddd	chr10:73576856-73577084(-)$1	228	48	64	9.2209
iiiiiinnnnniiiii	chr8:99053961-99054172(-)$1	211	135	151	10.2012
ffffffnnnnnfffff	chr17:48551807-48552184(+)$1	377	2	18	10.0807
:ccc[annnnna]ccc	chr17:42088774-42089026(-)$1	252	156	172	9.1503
ddd!!annnnna22dd	chr10:102745990-102746232(-)$1	242	124	140	9.2479
:eeeeennnnneeeee	chr9:117092720-117092942(+)$1	222	3	19	8.5579
bbddddnnnnndddd2	chr11:866862-867144(+)$1	282	90	106	8.6502
ggggggnnnnnggggg	chr1:116947024-116947242(+)$1	218	4	20	10.6534
iiiiiinnnnniiiii	chr8:48649490-48649763(-)$1	273	249	265	10.2012
ddd[bbnnnnnbbddd	chr15:90328271-90328495(-)$1	224	154	170	9.2209
!!ddddnnnnndddda	chr9:139099927-139100200(-)$1	273	242	258	9.3708
ffffffnnnnnfffff	chr12:108916420-108916736(-)$1	316	166	182	10.0807
ccc[bbnnnnnbbccc	chr11:2159493-2159723(-)$1	230	210	226	9.6349
eeee[annnnna]eee	chr17:7491297-7491572(+)$1	275	31	47	10.0566
ffffffnnnnnfffff	chr15:79214390-79214627(-)$1	237	34	50	10.0807
dd!!bbnnnnnbb333	chr13:113537259-113537530(+)$1	271	8	24	9.3838
ffffffnnnnnfffff	chr17:37008857-37009073(-)$1	216	108	124	10.0807
ggggggnnnnnggggg	chr3:124482015-124482347(-)$1	332	207	223	10.6534
eee[bbnnnnnbbeee	chr4:140625231-140625455(+)$1	224	26	42	9.5992
dddcccnnnnncccgg	chr5:68473256-68473534(+)$1	278	93	109	9.9430
ggggggnnnnnggggg	chr17:63524695-63524936(-)$1	241	73	89	10.6534
eeeebbnnnnnbb]ee	chr2:669390-669662(-)$1	272	217	233	9.4935
ggggggnnnnnggggg	chr6:33384283-33384546(-)$1	263	56	72	10.6534
ggggggoooooogggg	chr14:77935450-77935729(+)$1	279	168	184	6.5994
bbddddnnnnndddd]	chr11:65684805-65685071(-)$1	266	29	45	8.8994
ggggggnnnnnggggg	chr6:37450694-37450964(-)$1	270	209	225	10.6534
c[ddddnnnnndddd]	chr11:118915163-118915405(-)$1	242	104	120	9.5405
!eeeeennnnneeeee	chr10:104240353-104240666(-)$1	313	221	237	9.5795
!!ddddnnnnndddde	chr19:18702859-18703146(+)$1	287	77	93	9.4836
ffffffnnnnnfffff	chr7:98992013-98992342(+)$1	329	220	236	10.0807
:eeeeennnnneeeee	chr6:31807290-31807548(+)$1	258	161	177	8.5579
eeea[annnnna]a]e	chr2:242757713-242757964(+)$1	251	76	92	9.9262
d[ddddnnnnndddd]	chrX:152916616-152916851(+)$1	235	68	84	9.4310
ffff[annnnna]fff	chr10:73576179-73576394(-)$1	215	100	116	10.3491
cc[cccnnnnnccccc	chr15:44085893-44086124(+)$1	231	81	97	9.9837
ffffffnnnnnfffff	chr11:62339969-62340187(-)$1	218	190	206	10.0807
ffffffnnnnnfffff	chr3:167401786-167402127(-)$1	341	65	81	10.0807
ddd[bbnnnnnbb22d	chr7:150035610-150035892(-)$1	282	140	156	8.8786
ffffffnnnnnfffff	chr14:95058545-95058800(+)$1	255	79	95	10.0807
gggg[annnnna]ggg	chr16:18799320-18799548(-)$1	228	18	34	10.7603

#otherMatches

#Seq PSSM
CUGUGGAGCUGCCACA	chr1:155106879-155107145(+)$1	266	165	181	10.6534
UCCUUGUUUUCCAGGG	chr15:75931590-75931850(-)$1	260	58	74	10.0807
CAGUGGUUCCUCCAUG	chr3:186338667-186338880(+)$1	213	5	21	9.3553
UCUGGCUUCCUGGUAG	chr10:73576271-73576498(-)$1	227	204	220	10.3491
UGUAGACGUGGCUGUA	chr17:42430680-42430973(-)$1	293	133	149	6.5089
AGGCAGGAGUGCUGCC	chr12:6979844-6980076(+)$1	232	59	75	9.5822
GUGCUUCCUCAGGGCC	chr11:122928299-122928569(-)$1	270	90	106	9.5353
GACAGGCCCUCCCUGU	chr12:57606710-57606968(+)$1	258	188	204	10.6534
UCCAUGCUGCCCAGGG	chr14:102516930-102517205(+)$1	275	253	269	10.1458
GGUGUUAGAUUCAACA	chr11:64532026-64532256(-)$1	230	109	125	6.5994
ACCCUGGACUGCGGGG	chr17:79861195-79861479(-)$1	284	35	51	10.0807
CCCUGGACCAGGUCAG	chr20:44054455-44054726(+)$1	271	118	134	6.5994
UGGAUUAAUUAAAUAA	chr6:31321694-31321958(-)$1	264	242	258	9.6299
GUGGGGAGACCACCCC	chr6:29913232-29913451(+)$1	219	132	148	6.5994
UGUGCCAGCUGGGCAG	chr12:53693028-53693312(+)$1	284	188	204	9.4772
UUAGACUUUUUGUUAA	chr2:70508644-70508898(-)$1	254	223	239	9.6934
CCCUGCUGGGUGCCGG	chr8:144103053-144103352(+)$1	299	91	107	9.6560
uacacuuuuuuggucu	chr4:155506459-155506676(-)$1	217	111	127	9.3558
GGGAGCCCCUAGCCCC	chr10:73576856-73577084(-)$1	228	48	64	9.2209
GAAAAGUAAACCUUUU	chr8:99053961-99054172(-)$1	211	135	151	10.2012
ucuugggugaaccaag	chr17:48551807-48552184(+)$1	377	2	18	10.0807
GACUGUGAGAGGGAGU	chr17:42088774-42089026(-)$1	252	156	172	9.1503
GCUGUGAUGGGCUAGG	chr10:102745990-102746232(-)$1	242	124	140	9.2479
AGUGGUUUUAUAUCGC	chr9:117092720-117092942(+)$1	222	3	19	8.5579
CUCCUGGAAAACAGGU	chr11:866862-867144(+)$1	282	90	106	8.6502
CACCCACAGGCUGGGU	chr1:116947024-116947242(+)$1	218	4	20	10.6534
UUUACAGUAUUUGUAA	chr8:48649490-48649763(-)$1	273	249	265	10.2012
CACCUGUCGCCCAGUG	chr15:90328271-90328495(-)$1	224	154	170	9.2209
CUGAGGGCUCUCCUUG	chr9:139099927-139100200(-)$1	273	242	258	9.3708
UGUGUUGUCUAAACAU	chr12:108916420-108916736(-)$1	316	166	182	10.0807
UGUUCGGUUUGCGACA	chr11:2159493-2159723(-)$1	230	210	226	9.6349
CCCAGUGCUGGGGUGG	chr17:7491297-7491572(+)$1	275	31	47	10.0566
UGGUGGGGAGACCGCC	chr15:79214390-79214627(-)$1	237	34	50	10.0807
GCCCGCCUCCCGCACU	chr13:113537259-113537530(+)$1	271	8	24	9.3838
AUCUCCGUGAAGGGGA	chr17:37008857-37009073(-)$1	216	108	124	10.0807
CUGGGCCCCCAGCCUG	chr3:124482015-124482347(-)$1	332	207	223	10.6534
UAUCUGGACCUCAAUA	chr4:140625231-140625455(+)$1	224	26	42	9.5992
GACUGUCAAGAACAAG	chr5:68473256-68473534(+)$1	278	93	109	9.9430
UAUAAAUAUAUUUUAU	chr17:63524695-63524936(-)$1	241	73	89	10.6534
AGUGGUAGGGCACACA	chr2:669390-669662(-)$1	272	217	233	9.4935
GUACCUGCAGUGGGUG	chr6:33384283-33384546(-)$1	263	56	72	10.6534
CUGGACACUUCAGUCC	chr14:77935450-77935729(+)$1	279	168	184	6.5994
GGGCCAAUCGCUGGCA	chr11:65684805-65685071(-)$1	266	29	45	8.8994
UCCCUUAGCCCAAGGG	chr6:37450694-37450964(-)$1	270	209	225	10.6534
UCCCUCUCUCUGAGGC	chr11:118915163-118915405(-)$1	242	104	120	9.5405
AACUACCUGCAGUGGU	chr10:104240353-104240666(-)$1	313	221	237	9.5795
GCGAUCAGCGAGGUUC	chr19:18702859-18703146(+)$1	287	77	93	9.4836
CUCCCUCAAAAAGGGA	chr7:98992013-98992342(+)$1	329	220	236	10.0807
AGUAGAUAGCUUCUAU	chr6:31807290-31807548(+)$1	258	161	177	8.5579
CCACGGGAUGACAGUU	chr2:242757713-242757964(+)$1	251	76	92	9.9262
CCUGGAGAGGAUCUAU	chrX:152916616-152916851(+)$1	235	68	84	9.4310
UCUGGCUUCCUGGUAG	chr10:73576179-73576394(-)$1	215	100	116	10.3491
UGUGGCUUCGUGUCCA	chr15:44085893-44086124(+)$1	231	81	97	9.9837
GUCACUCUGGUGGUGG	chr11:62339969-62340187(-)$1	218	190	206	10.0807
GGCAGUAUUGAACUGC	chr3:167401786-167402127(-)$1	341	65	81	10.0807
GGACAGUUCGCCUUCU	chr7:150035610-150035892(-)$1	282	140	156	8.8786
GGGCUAAGCUAUGGCC	chr14:95058545-95058800(+)$1	255	79	95	10.0807
UAGAGCACAGAGGUUU	chr16:18799320-18799548(-)$1	228	18	34	10.7603

#DB
((((((.....)))))	chr1:155106879-155107145(+)$1	1	165	181	10.6534
((((((.....)))))	chr15:75931590-75931850(-)$1	1	58	74	10.0807
..((((.....)))))	chr3:186338667-186338880(+)$1	1	5	21	9.3553
((((.(.....).)))	chr10:73576271-73576498(-)$1	1	204	220	10.3491
((((.(......).))	chr17:42430680-42430973(-)$1	1	133	149	6.5089
.(((((.....)))))	chr12:6979844-6980076(+)$1	1	59	75	9.5822
(.((((.....)))))	chr11:122928299-122928569(-)$1	1	90	106	9.5353
((((((.....)))))	chr12:57606710-57606968(+)$1	1	188	204	10.6534
(((.((.....)).))	chr14:102516930-102517205(+)$1	1	253	269	10.1458
((((((......))))	chr11:64532026-64532256(-)$1	1	109	125	6.5994
((((((.....)))))	chr17:79861195-79861479(-)$1	1	35	51	10.0807
((((((......))))	chr20:44054455-44054726(+)$1	1	118	134	6.5994
(..(((.....)))..	chr6:31321694-31321958(-)$1	1	242	258	9.6299
((((((......))))	chr6:29913232-29913451(+)$1	1	132	148	6.5994
(.((((.....)))).	chr12:53693028-53693312(+)$1	1	188	204	9.4772
((.(((.....))).)	chr2:70508644-70508898(-)$1	1	223	239	9.6934
(((.((.....)).))	chr8:144103053-144103352(+)$1	1	91	107	9.6560
...(((.....)))..	chr4:155506459-155506676(-)$1	1	111	127	9.3558
(((.((.....)))))	chr10:73576856-73577084(-)$1	1	48	64	9.2209
((((((.....)))))	chr8:99053961-99054172(-)$1	1	135	151	10.2012
((((((.....)))))	chr17:48551807-48552184(+)$1	1	2	18	10.0807
.(((.(.....).)))	chr17:42088774-42089026(-)$1	1	156	172	9.1503
(((..(.....)..))	chr10:102745990-102746232(-)$1	1	124	140	9.2479
.(((((.....)))))	chr9:117092720-117092942(+)$1	1	3	19	8.5579
((((((.....)))).	chr11:866862-867144(+)$1	1	90	106	8.6502
((((((.....)))))	chr1:116947024-116947242(+)$1	1	4	20	10.6534
((((((.....)))))	chr8:48649490-48649763(-)$1	1	249	265	10.2012
(((.((.....)))))	chr15:90328271-90328495(-)$1	1	154	170	9.2209
..((((.....)))))	chr9:139099927-139100200(-)$1	1	242	258	9.3708
((((((.....)))))	chr12:108916420-108916736(-)$1	1	166	182	10.0807
(((.((.....)))))	chr11:2159493-2159723(-)$1	1	210	226	9.6349
((((.(.....).)))	chr17:7491297-7491572(+)$1	1	31	47	10.0566
((((((.....)))))	chr15:79214390-79214627(-)$1	1	34	50	10.0807
((..((.....))...	chr13:113537259-113537530(+)$1	1	8	24	9.3838
((((((.....)))))	chr17:37008857-37009073(-)$1	1	108	124	10.0807
((((((.....)))))	chr3:124482015-124482347(-)$1	1	207	223	10.6534
(((.((.....)))))	chr4:140625231-140625455(+)$1	1	26	42	9.5992
)))(((.....)))((	chr5:68473256-68473534(+)$1	1	93	109	9.9430
((((((.....)))))	chr17:63524695-63524936(-)$1	1	73	89	10.6534
((((((.....)).))	chr2:669390-669662(-)$1	1	217	233	9.4935
((((((.....)))))	chr6:33384283-33384546(-)$1	1	56	72	10.6534
((((((......))))	chr14:77935450-77935729(+)$1	1	168	184	6.5994
((((((.....)))).	chr11:65684805-65685071(-)$1	1	29	45	8.8994
((((((.....)))))	chr6:37450694-37450964(-)$1	1	209	225	10.6534
(.((((.....)))).	chr11:118915163-118915405(-)$1	1	104	120	9.5405
.(((((.....)))))	chr10:104240353-104240666(-)$1	1	221	237	9.5795
..((((.....)))))	chr19:18702859-18703146(+)$1	1	77	93	9.4836
((((((.....)))))	chr7:98992013-98992342(+)$1	1	220	236	10.0807
.(((((.....)))))	chr6:31807290-31807548(+)$1	1	161	177	8.5579
((((.(.....).).)	chr2:242757713-242757964(+)$1	1	76	92	9.9262
(.((((.....)))).	chrX:152916616-152916851(+)$1	1	68	84	9.4310
((((.(.....).)))	chr10:73576179-73576394(-)$1	1	100	116	10.3491
((.(((.....)))))	chr15:44085893-44086124(+)$1	1	81	97	9.9837
((((((.....)))))	chr11:62339969-62340187(-)$1	1	190	206	10.0807
((((((.....)))))	chr3:167401786-167402127(-)$1	1	65	81	10.0807
(((.((.....))..)	chr7:150035610-150035892(-)$1	1	140	156	8.8786
((((((.....)))))	chr14:95058545-95058800(+)$1	1	79	95	10.0807
((((.(.....).)))	chr16:18799320-18799548(-)$1	1	18	34	10.7603

#PSSM
g : 0.24	f : 0.22	d : 0.13	e : 0.08	! : 0.06	c : 0.06	: : 0.05	i : 0.03	b : 0.03	[ : 0.01	a : 0.01	" : 0.01	
g : 0.24	f : 0.20	e : 0.13	d : 0.12	! : 0.06	[ : 0.06	c : 0.06	i : 0.03	b : 0.03	" : 0.01	
g : 0.24	d : 0.24	f : 0.20	e : 0.13	c : 0.05	! : 0.03	[ : 0.03	i : 0.03	" : 0.01	
g : 0.22	f : 0.20	d : 0.15	[ : 0.12	e : 0.10	c : 0.10	i : 0.03	! : 0.03	a : 0.01	
g : 0.18	f : 0.17	d : 0.15	b : 0.15	[ : 0.12	c : 0.08	e : 0.06	i : 0.03	! : 0.01	
g : 0.18	f : 0.17	d : 0.15	b : 0.15	a : 0.13	c : 0.08	e : 0.06	i : 0.03	
n : 0.91	o : 0.08	
n : 0.91	o : 0.08	
n : 0.91	o : 0.08	
n : 0.91	o : 0.08	
n : 0.91	o : 0.08	
f : 0.17	d : 0.15	b : 0.15	g : 0.12	a : 0.12	o : 0.08	c : 0.08	e : 0.06	i : 0.03	
g : 0.18	f : 0.17	d : 0.15	b : 0.15	] : 0.10	c : 0.08	e : 0.06	i : 0.03	a : 0.01	2 : 0.01	
g : 0.20	f : 0.20	d : 0.18	c : 0.12	e : 0.10	] : 0.06	i : 0.03	2 : 0.03	3 : 0.01	a : 0.01	
g : 0.25	f : 0.20	d : 0.20	e : 0.12	c : 0.06	2 : 0.05	] : 0.03	i : 0.03	3 : 0.01	
g : 0.25	f : 0.22	e : 0.15	d : 0.10	] : 0.06	c : 0.06	2 : 0.05	i : 0.03	a : 0.01	3 : 0.01	

#score	552.3921249518797
#seq	58
#width	16
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF805LKH_SFPQ_transcript_m1_run1.txt

#BEAR
"""ccc[ffffff[cccooooooccc]ffffff]ccc]b	chr3:78866304-78866624(-)$1	320	67	106	15.3792
ggccc!!=============lll=============22c	chr8:145682830-145683088(-)$1	258	204	243	17.3525
b[ggggggg[ccccccooooooccc22cccggggggg]b	chr19:57350086-57350334(-)$1	248	192	231	15.6260
bb[dddd[bb[ccc!!aooooooa]ccc]bb]dddd]bb	chr3:126716395-126716657(+)$1	262	156	195	13.5802
b!!==========!!ddddllldddd==========]bb	chr6:143265765-143266030(-)$1	265	214	253	16.0260
=======[eeeee[cccooooooccceeeee]=======	chr2:232573524-232573803(+)$1	279	169	208	18.3715
[iiiiiiiiidddd[cccmmmmcccdddd]iiiiiiiii	chr10:98641044-98641287(+)$1	243	25	64	13.6489
!!eeeee[ccc[eeeeeooooooeeeee]ccc22eeeee	chr4:87886100-87886447(+)$1	347	102	141	14.5416
dccc"""ggggggg[bboooooobbggggggg]ccc::C	chr19:939734-940000(+)$1	266	133	172	13.9155
]ccc===========[aooooooa===========:GGG	chr16:81553346-81553657(+)$1	311	204	243	17.3067
!!===============mmmm===============22d	chr20:362662-362902(+)$1	240	88	127	17.3305
[a[ccc[==========ppppppp==========]ccc]	chr1:2164931-2165241(+)$1	310	47	86	13.9996
============!!bbpppppppbb22============	chr15:99258700-99258949(+)$1	249	157	196	14.3855
ffffff!!a[ccc[cccoooooocccccc]a4444ffff	chr20:61274164-61274410(+)$1	246	128	167	15.5629
B{Accc[==========oooooo==========]cccdd	chr11:853766-854045(+)$1	279	92	131	16.3921
iiiiiiii!!gggggggbbmmmmbb]ggggggg22iiii	chr1:8085563-8085818(-)$1	255	13	52	13.5246
bb[gggggggffffffooooooffffff]ggggggg]bb	chr17:75370220-75370468(+)$1	248	105	144	13.9608
c####eeeee[ccc!!aooooooa22ccc]eeeee4444	chr2:236506766-236507034(+)$1	268	130	169	15.5084
eeeee[ccc"""eeeeeooooooeeeee22ccc]eeeee	chr16:50619315-50619549(+)$1	234	162	201	13.9712
=======[a!!ddddcccmmmmccc]dddd22a======	chr10:114718380-114718681(+)$1	301	156	195	13.1480
[bb!!bb[ccc"""cccooooooccc]cccbb22bb]cc	chr16:12781988-12782238(-)$1	250	194	233	14.9253
ffff:============oooooo============FFFF	chr19:38441409-38441671(+)$1	262	127	166	16.9017
==================lll==================	chr10:77875746-77876126(+)$1	380	304	343	18.6543
dddd[eeeee[bb!!bboooooobb22bb]eeeee]ddd	chr7:127672398-127672657(+)$1	259	108	147	13.4377
[a[ggggggg"""ddddooooooddddggggggg22a]d	chr19:2012793-2013063(-)$1	270	224	263	16.1640
eee####eeeee!!cccooooooccc22eeeee333eee	chr2:63137253-63137511(+)$1	258	198	237	15.6010
[dddd!!eeeee[a[a[aooooooa]a]a]eeeee22dd	chr2:240313307-240313568(-)$1	261	13	52	14.3349
dd[eeeee[ccc!!cccoooooocccccceeeeedddd2	chr17:79130979-79131251(-)$1	272	132	171	14.6303
""eeeee[dddd"""bboooooobb333ddddeeeee33	chr2:242240688-242240945(-)$1	257	184	223	15.2851
cceeeee[dddd[ddddoooooodddddddd]eeeee22	chr6:157342614-157342839(+)$1	225	37	76	13.1792
ggggg!!==========rrrrrrrrr==========444	chr3:185514579-185514932(-)$1	353	90	129	16.7380
e[bbiiiiiiiii!!bbnnnnnbb333iiiiiiiii]bb	chr10:128594566-128594814(+)$1	248	71	110	14.5348
============[dddd[ammmmadddd]==========	chr17:79966169-79966429(+)$1	260	115	154	15.8068
eeeee$$$$$==========lll==========22eeee	chr17:64424109-64424410(+)$1	301	25	64	14.1015
========$$$$$ggggggglllggggggg]========	chr12:66246941-66247193(+)$1	252	123	162	14.2268
fffff####bb[eeeeeooooooeeeee]bb4444ffff	chr2:178114296-178114551(-)$1	255	46	85	13.4739
============"""ddddmmmmdddd4444========	chr20:42984902-42985143(+)$1	241	71	110	15.0579
"""===========ddddmmmmdddd]===========3	chr7:158280996-158281261(-)$1	265	46	85	16.0044
[ccc[============oooooo============333c	chr11:70961891-70962116(-)$1	225	39	78	21.0780
dddccc[eeeee!!cccooooooccc22eeeee22ccc]	chr2:38600023-38600313(-)$1	290	145	184	15.0135
!a!!=============oooooo=============22a	chr4:1798735-1798996(+)$1	261	28	67	20.9440
a[eeeee!!eeeee[bboooooobb]eeeeeeeeee]a2	chr21:44395423-44395707(+)$1	284	148	187	15.0251
fff[iiiiiiiiibb[ammmma]bb]iiiiiiiiiffff	chr17:128814-129109(-)$1	295	65	104	13.4181
=====[bb[ffffff[aooooooaffffff]bb======	chr2:236411983-236412217(+)$1	234	156	195	15.5598
!!=============aqqqqqqqqa]=============	chr17:79962980-79963200(+)$1	220	92	131	15.7224
[bb"""ggggggg[cccooooooccc]ggggggg333bb	chr3:66021164-66021392(-)$1	228	3	42	17.5586
gggggg===========oooooo===========:::::	chr1:8473011-8473313(-)$1	302	113	152	15.5524
ggggg[ccc"""eeeeeooooooeeeee]ccc]gggggg	chr17:55364694-55364951(+)$1	257	44	83	15.8643
!!ccc[ccc[gggggggaooooooa]gggggggccc]cc	chr10:114759420-114759732(+)$1	312	252	291	16.5063
ggggggg!!eeeee!!bbnnnnnbb22eeeee]gggggg	chr17:80188033-80188269(+)$1	236	12	51	12.5395
====[cccddddeeeeeooooooeeeee22dddd333cc	chr17:80478363-80478620(+)$1	257	137	176	14.3942
:ggggggg[a[ffffffooooooffffff]a22gggggg	chr1:17995020-17995305(+)$1	285	172	211	14.1003
eeeeeee[dddd!!cccooooooccc22dddd]eeeee:	chr14:54421354-54421624(-)$1	270	156	195	13.7029
====iiiiiiiii!!bboooooobb22iiiiiiiii]==	chr1:87397276-87397646(+)$1	370	53	92	19.7419

#otherMatches

#Seq PSSM
uaaaauuuaugauuauacuauacugucaucauguguucc	chr3:78866304-78866624(-)$1	320	67	106	15.3792
GGGGUCUGGCUCCUGGGGUUGGCAGCCCCAGGGGCUCUG	chr8:145682830-145683088(-)$1	258	204	243	17.3525
GUGCUGGUCGCCAGGCUGUUUUGCCAGUGGGACUGGCUC	chr19:57350086-57350334(-)$1	248	192	231	15.6260
UGGGCAUGAUGAGUGCCGUCCCAGAGCUGGUGGUGUGCG	chr3:126716395-126716657(+)$1	262	156	195	13.5802
UGGGUGGAACGUUGGCCCGUUCCGGGAAUGUUCCAUGAC	chr6:143265765-143266030(-)$1	265	214	253	16.0260
GGGGCCGAGGGCUAGGCGCGGAGGCCGGCUCACGGCCCU	chr2:232573524-232573803(+)$1	279	169	208	18.3715
uuuagaauaCAGUUUAAUGAUGGUUAACUGGUAUUUUAA	chr10:98641044-98641287(+)$1	243	25	64	13.6489
AAUGGGUAUUUAUUUGACCUUUCUUAGAAAAACAACCCA	chr4:87886100-87886447(+)$1	347	102	141	14.5416
GGGCUCUGGGAGAAUCGGCAACACGUUUUCUUCGUCGUG	chr19:939734-940000(+)$1	266	133	172	13.9155
GGCUCUCUGGGAAGGUCUCAUCUGUCUUCUCGGGGCUGU	chr16:81553346-81553657(+)$1	311	204	243	17.3067
gugugugugugugugugugugcgugCGCGCGCGCGCUUG	chr20:362662-362902(+)$1	240	88	127	17.3305
UCGCUUGGUUGGGAAGCUCUGCGCGCUUCCCAGUGGAGG	chr1:2164931-2165241(+)$1	310	47	86	13.9996
UGAAUUGCCUUGCUCAACUUGCGUGUAUAGGGUGGUUCA	chr15:99258700-99258949(+)$1	249	157	196	14.3855
AGGCGCAGGCCCCACAGAUCCAGCUGGGGACGAACGCGC	chr20:61274164-61274410(+)$1	246	128	167	15.5629
CGGGGUGUCUCCUGGGAGCCUCAUUCCGGGGGAGGCUGG	chr11:853766-854045(+)$1	279	92	131	16.3921
UCCUCGUCCCGCAGCCUGCGCUCGCGGGGUUGCCCGGCG	chr1:8085563-8085818(-)$1	255	13	52	13.5246
UGCGGGCAGGGAGAGUAUUUUGGCUCUCUCCUGUCUUCG	chr17:75370220-75370468(+)$1	248	105	144	13.9608
uuccugccugcccccacugagcugcugggacaggcuccc	chr2:236506766-236507034(+)$1	268	130	169	15.5084
GCUGGCUCUCCAGAGGCCUUGCUGCCUCCAAGAUCCAGC	chr16:50619315-50619549(+)$1	234	162	201	13.9712
UUGUUGUCGUGUCAGUuuuauuaagccugaaucacaaug	chr10:114718380-114718681(+)$1	301	156	195	13.1480
guuguggugugcaccuguagucccagcuaccccgaaggc	chr16:12781988-12782238(-)$1	250	194	233	14.9253
caccuggggaaucuugguaacaguugggauucucuggcu	chr19:38441409-38441671(+)$1	262	127	166	16.9017
UGGAUUUACAGAAUUGAAAGUUUUAAUUCUGUAAAUuua	chr10:77875746-77876126(+)$1	380	304	343	18.6543
GGCCGGUCGGAGGGAGCAGUUGGGUGGCCGCUGAUAGGC	chr7:127672398-127672657(+)$1	259	108	147	13.4377
UGACCUUGGGACAUGUAUGCGAUUGCACUUGAGGGACCG	chr19:2012793-2013063(-)$1	270	224	263	16.1640
GAGUUUGACUUUAAAGAAUCAUCUCUCAAAAGUAGCCUU	chr2:63137253-63137511(+)$1	258	198	237	15.6010
CAGAGCUGAGGCACGUGGGAGCUGCGGAGGGCCUCUUCU	chr2:240313307-240313568(-)$1	261	13	52	14.3349
GGUGCCCGCGGUGUCGGAUGGACCCGGCCCGGGCCCGUG	chr17:79130979-79131251(-)$1	272	132	171	14.6303
UUUGCUGAUAAGUAGACGAUUAGGUGGUCUUAUAGCAUU	chr2:242240688-242240945(-)$1	257	184	223	15.2851
CCUCCCUACCCCGCACGUAGGCUCGUGGGGGCGGGGACA	chr6:157342614-157342839(+)$1	225	37	76	13.1792
GGAGAAACAGGGUGGGGCAGUGCGUUUCUCACUUUGCAG	chr3:185514579-185514932(-)$1	353	90	129	16.7380
GAGGAGGGGGCGCGACCUGGGUGGCCAGCGCCCCUUGCC	chr10:128594566-128594814(+)$1	248	71	110	14.5348
GGCGCAGUGCUGAGGUGUCCCACGUACCCCAGCACUGUG	chr17:79966169-79966429(+)$1	260	115	154	15.8068
AGACUUAAGGUAUAUAUGAGACCCUCAUGUAUAAUGGUU	chr17:64424109-64424410(+)$1	301	25	64	14.1015
GAUUUAAAAUCUGUUGAAUAUACUGUUCAAGUUUAAAUC	chr12:66246941-66247193(+)$1	252	123	162	14.2268
cuacauuucguguuaccaugcuggguaagauuucuugua	chr2:178114296-178114551(-)$1	255	46	85	13.4739
CCGCGCAGGGUGGAGCGUUGGAAAAUGAGAAUAUCUUGU	chr20:42984902-42985143(+)$1	241	71	110	15.0579
GGACCAGCCCUGGGUUCCGGAUGGAAUUUUGGGGCUGGG	chr7:158280996-158281261(-)$1	265	46	85	16.0044
AGAGGCCAUCCGAAAAUAAAGUGGUUUUCGGGUGGAAAU	chr11:70961891-70962116(-)$1	225	39	78	21.0780
ACAGUAACAUAUAUGUAAGAAUGUACCAGUGUGACUACU	chr2:38600023-38600313(-)$1	290	145	184	15.0135
AGAAGGGUGGGAGGUGGGACGCGUUGCCUCCUACCCCGC	chr4:1798735-1798996(+)$1	261	28	67	20.9440
UGACAGGAAGUGCCGGGCAGGGUCUGGGCGCCCUGUGGG	chr21:44395423-44395707(+)$1	284	148	187	15.0251
UGGAUUUUUCUGCCUGCUUGUGGGGUGUGGGAAGGCUGG	chr17:128814-129109(-)$1	295	65	104	13.4181
CUGGGUCUCUGAGUGUCCAUGUAGUACUUGAAGUUUGGG	chr2:236411983-236412217(+)$1	234	156	195	15.5598
GCCCGCUGGGCAGAGCAGAACACGGCCUCUGCUCAGUGG	chr17:79962980-79963200(+)$1	220	92	131	15.7224
uguguguguauauguauguaugGAUGGAUGUACGUGAAU	chr3:66021164-66021392(-)$1	228	3	42	17.5586
AAUGAAGUAUGUGUGUGUGUGUUCACGCAUGUAUAAAUA	chr1:8473011-8473313(-)$1	302	113	152	15.5524
CCCUCUCGGCCAGCCUCAAGGAAGGGGUCCUGUGGGGGA	chr17:55364694-55364951(+)$1	257	44	83	15.8643
cuccuggaucuuguuuucucaucuguaaaaugaauuggg	chr10:114759420-114759732(+)$1	312	252	291	16.5063
GGGUCUAUUCCGCCAGCGUGGUGUGGAGGCGGCUGGGCU	chr17:80188033-80188269(+)$1	236	12	51	12.5395
GUUUCUAUUCUGCAGCGAGGUCGCGCUGAACAGAAAUGU	chr17:80478363-80478620(+)$1	257	137	176	14.3942
UGUGCAGCCAGGGAAAUGGAAAAGUUUCUGUUCGCUGCG	chr1:17995020-17995305(+)$1	285	172	211	14.1003
CCGGCCCUGCUGAACGCUGAGUUGCGCCUAGUCGGGUUU	chr14:54421354-54421624(-)$1	270	156	195	13.7029
UGAUAAAGCUUUUCUUACUAUGAUACUAAAGGCUUUGAU	chr1:87397276-87397646(+)$1	370	53	92	19.7419

#DB
...(((.((((((.(((......))).)))))).))).)	chr3:78866304-78866624(-)$1	1	67	106	15.3792
))(((..(((((((((((((...)))))))))))))..)	chr8:145682830-145683088(-)$1	1	204	243	17.3525
(.(((((((.((((((......)))..)))))))))).)	chr19:57350086-57350334(-)$1	1	192	231	15.6260
((.((((.((.(((..(......).))).)).)))).))	chr3:126716395-126716657(+)$1	1	156	195	13.5802
(..((((((((((..((((...)))))))))))))).))	chr6:143265765-143266030(-)$1	1	214	253	16.0260
(((((((.(((((.(((......)))))))).)))))))	chr2:232573524-232573803(+)$1	1	169	208	18.3715
.(((((((((((((.(((....))))))).)))))))))	chr10:98641044-98641287(+)$1	1	25	64	13.6489
..(((((.(((.(((((......))))).)))..)))))	chr4:87886100-87886447(+)$1	1	102	141	14.5416
)(((...(((((((.((......))))))))).)))..(	chr19:939734-940000(+)$1	1	133	172	13.9155
.)))(((((((((((.(......)))))))))))).)))	chr16:81553346-81553657(+)$1	1	204	243	17.3067
..(((((((((((((((....)))))))))))))))..)	chr20:362662-362902(+)$1	1	88	127	17.3305
.(.(((.((((((((((.......)))))))))).))).	chr1:2164931-2165241(+)$1	1	47	86	13.9996
((((((((((((..((.......))..))))))))))))	chr15:99258700-99258949(+)$1	1	157	196	14.3855
((((((..(.(((.(((......)))))).)....))))	chr20:61274164-61274410(+)$1	1	128	167	15.5629
(.((((.((((((((((......)))))))))).)))((	chr11:853766-854045(+)$1	1	92	131	16.3921
((((((((..(((((((((....)).)))))))..))))	chr1:8085563-8085818(-)$1	1	13	52	13.5246
((.(((((((((((((......)))))).))))))).))	chr17:75370220-75370468(+)$1	1	105	144	13.9608
(....(((((.(((..(......)..))).)))))....	chr2:236506766-236507034(+)$1	1	130	169	15.5084
(((((.(((...(((((......)))))..))).)))))	chr16:50619315-50619549(+)$1	1	162	201	13.9712
(((((((.(..(((((((....))).))))..)))))))	chr10:114718380-114718681(+)$1	1	156	195	13.1480
.((..((.(((...(((......))).)))))..)).))	chr16:12781988-12782238(-)$1	1	194	233	14.9253
)))).((((((((((((......))))))))))))))))	chr19:38441409-38441671(+)$1	1	127	166	16.9017
((((((((((((((((((...))))))))))))))))))	chr10:77875746-77876126(+)$1	1	304	343	18.6543
((((.(((((.((..((......))..)).))))).)))	chr7:127672398-127672657(+)$1	1	108	147	13.4377
.(.(((((((...((((......)))))))))))..).)	chr19:2012793-2013063(-)$1	1	224	263	16.1640
(((....(((((..(((......)))..)))))...)))	chr2:63137253-63137511(+)$1	1	198	237	15.6010
.((((..(((((.(.(.(......).).).)))))..))	chr2:240313307-240313568(-)$1	1	13	52	14.3349
((.(((((.(((..(((......))))))))))))))).	chr17:79130979-79131251(-)$1	1	132	171	14.6303
..(((((.((((...((......))...)))))))))..	chr2:242240688-242240945(-)$1	1	184	223	15.2851
(((((((.((((.((((......)))))))).)))))..	chr6:157342614-157342839(+)$1	1	37	76	13.1792
(((((..((((((((((.........))))))))))...	chr3:185514579-185514932(-)$1	1	90	129	16.7380
(.(((((((((((..((.....))...))))))))).))	chr10:128594566-128594814(+)$1	1	71	110	14.5348
((((((((((((.((((.(....))))).))))))))))	chr17:79966169-79966429(+)$1	1	115	154	15.8068
(((((.....((((((((((...))))))))))..))))	chr17:64424109-64424410(+)$1	1	25	64	14.1015
((((((((.....(((((((...))))))).))))))))	chr12:66246941-66247193(+)$1	1	123	162	14.2268
(((((....((.(((((......))))).))....))))	chr2:178114296-178114551(-)$1	1	46	85	13.4739
((((((((((((...((((....))))....))))))))	chr20:42984902-42985143(+)$1	1	71	110	15.0579
...(((((((((((((((....)))).))))))))))).	chr7:158280996-158281261(-)$1	1	46	85	16.0044
.(((.((((((((((((......))))))))))))...)	chr11:70961891-70962116(-)$1	1	39	78	21.0780
((((((.(((((..(((......)))..)))))..))).	chr2:38600023-38600313(-)$1	1	145	184	15.0135
.(..(((((((((((((......)))))))))))))..)	chr4:1798735-1798996(+)$1	1	28	67	20.9440
(.(((((..(((((.((......)).)))))))))).).	chr21:44395423-44395707(+)$1	1	148	187	15.0251
(((.(((((((((((.(....).)).)))))))))))))	chr17:128814-129109(-)$1	1	65	104	13.4181
(((((.((.((((((.(......))))))).))))))))	chr2:236411983-236412217(+)$1	1	156	195	15.5598
..((((((((((((((........).)))))))))))))	chr17:79962980-79963200(+)$1	1	92	131	15.7224
.((...(((((((.(((......))).)))))))...))	chr3:66021164-66021392(-)$1	1	3	42	17.5586
))))))(((((((((((......))))))))))).....	chr1:8473011-8473313(-)$1	1	113	152	15.5524
(((((.(((...(((((......))))).))).))))))	chr17:55364694-55364951(+)$1	1	44	83	15.8643
..(((.(((.((((((((......).)))))))))).))	chr10:114759420-114759732(+)$1	1	252	291	16.5063
(((((((..(((((..((.....))..))))).))))))	chr17:80188033-80188269(+)$1	1	12	51	12.5395
((((.((((((((((((......)))))..))))...))	chr17:80478363-80478620(+)$1	1	137	176	14.3942
.(((((((.(.((((((......)))))).)..))))))	chr1:17995020-17995305(+)$1	1	172	211	14.1003
))(((((.((((..(((......)))..)))).))))).	chr14:54421354-54421624(-)$1	1	156	195	13.7029
(((((((((((((..((......))..))))))))).))	chr1:87397276-87397646(+)$1	1	53	92	19.7419

#PSSM
= : 0.18	[ : 0.12	g : 0.09	! : 0.09	e : 0.09	b : 0.07	d : 0.07	f : 0.07	" : 0.05	c : 0.03	] : 0.01	B : 0.01	i : 0.01	a : 0.01	: : 0.01	
= : 0.18	g : 0.11	! : 0.09	b : 0.07	c : 0.07	f : 0.07	e : 0.07	d : 0.07	" : 0.05	[ : 0.05	a : 0.05	i : 0.03	{ : 0.01	# : 0.01	
= : 0.22	e : 0.14	g : 0.11	c : 0.09	[ : 0.09	f : 0.07	b : 0.05	d : 0.05	" : 0.03	! : 0.03	i : 0.03	A : 0.01	# : 0.01	
= : 0.25	c : 0.16	g : 0.14	e : 0.14	d : 0.05	f : 0.05	i : 0.03	# : 0.03	! : 0.03	b : 0.01	[ : 0.01	" : 0.01	
= : 0.25	g : 0.14	e : 0.14	c : 0.11	i : 0.09	[ : 0.05	d : 0.03	" : 0.03	f : 0.03	# : 0.03	! : 0.01	: : 0.01	
= : 0.27	e : 0.14	g : 0.11	c : 0.09	i : 0.09	[ : 0.07	! : 0.05	" : 0.03	# : 0.03	d : 0.01	f : 0.01	b : 0.01	$ : 0.01	
= : 0.29	e : 0.14	g : 0.11	i : 0.09	[ : 0.07	! : 0.07	c : 0.07	b : 0.03	# : 0.03	d : 0.01	" : 0.01	$ : 0.01	
= : 0.33	[ : 0.14	g : 0.11	e : 0.11	i : 0.09	c : 0.07	! : 0.05	f : 0.01	$ : 0.01	# : 0.01	b : 0.01	
= : 0.31	e : 0.11	g : 0.09	c : 0.09	i : 0.07	d : 0.07	! : 0.05	[ : 0.05	a : 0.03	$ : 0.03	f : 0.01	b : 0.01	# : 0.01	
= : 0.31	e : 0.14	i : 0.07	g : 0.07	d : 0.07	[ : 0.05	c : 0.05	f : 0.03	b : 0.03	! : 0.03	" : 0.03	$ : 0.03	a : 0.01	
= : 0.33	e : 0.11	c : 0.09	d : 0.09	[ : 0.07	g : 0.07	f : 0.05	" : 0.05	i : 0.05	! : 0.01	$ : 0.01	b : 0.01	
= : 0.33	e : 0.11	d : 0.11	c : 0.09	f : 0.07	g : 0.07	" : 0.07	i : 0.05	[ : 0.03	b : 0.01	$ : 0.01	
= : 0.27	e : 0.14	! : 0.09	f : 0.07	c : 0.07	g : 0.07	" : 0.07	[ : 0.05	i : 0.05	d : 0.03	b : 0.01	$ : 0.01	
= : 0.25	! : 0.16	e : 0.12	d : 0.09	[ : 0.07	g : 0.07	c : 0.05	f : 0.05	" : 0.05	a : 0.01	b : 0.01	
= : 0.24	c : 0.18	! : 0.12	e : 0.09	d : 0.09	[ : 0.07	g : 0.05	f : 0.05	b : 0.03	" : 0.03	
c : 0.22	= : 0.20	b : 0.12	d : 0.11	e : 0.09	! : 0.05	[ : 0.05	g : 0.05	f : 0.03	a : 0.03	
c : 0.20	= : 0.20	b : 0.12	d : 0.11	a : 0.09	e : 0.09	g : 0.05	o : 0.03	p : 0.01	[ : 0.01	q : 0.01	f : 0.01	
o : 0.61	= : 0.05	d : 0.05	c : 0.03	m : 0.03	p : 0.03	b : 0.03	a : 0.03	r : 0.01	n : 0.01	[ : 0.01	g : 0.01	q : 0.01	
o : 0.64	m : 0.09	= : 0.03	d : 0.03	p : 0.03	n : 0.03	b : 0.01	l : 0.01	r : 0.01	a : 0.01	g : 0.01	q : 0.01	
o : 0.64	m : 0.14	= : 0.03	l : 0.03	p : 0.03	n : 0.03	r : 0.01	g : 0.01	q : 0.01	
o : 0.64	m : 0.14	l : 0.09	p : 0.03	n : 0.03	r : 0.01	q : 0.01	
o : 0.64	m : 0.11	l : 0.07	= : 0.03	p : 0.03	n : 0.03	r : 0.01	a : 0.01	q : 0.01	
o : 0.61	l : 0.05	c : 0.05	m : 0.05	d : 0.03	= : 0.03	p : 0.03	f : 0.01	r : 0.01	b : 0.01	] : 0.01	q : 0.01	n : 0.01	
c : 0.22	b : 0.18	= : 0.16	a : 0.09	d : 0.09	e : 0.09	f : 0.03	o : 0.03	p : 0.01	r : 0.01	g : 0.01	q : 0.01	
c : 0.22	= : 0.20	b : 0.16	d : 0.11	e : 0.09	f : 0.05	a : 0.05	] : 0.01	2 : 0.01	r : 0.01	3 : 0.01	g : 0.01	
= : 0.20	c : 0.18	d : 0.12	] : 0.12	2 : 0.11	e : 0.09	f : 0.05	g : 0.03	3 : 0.03	r : 0.01	
= : 0.25	2 : 0.14	e : 0.12	d : 0.11	] : 0.07	c : 0.07	g : 0.07	f : 0.05	3 : 0.03	a : 0.01	i : 0.01	
= : 0.29	e : 0.14	c : 0.11	g : 0.11	f : 0.07	d : 0.07	2 : 0.05	i : 0.05	b : 0.01	] : 0.01	3 : 0.01	4 : 0.01	
= : 0.29	] : 0.11	g : 0.11	c : 0.09	e : 0.09	d : 0.09	f : 0.05	i : 0.05	2 : 0.03	b : 0.01	a : 0.01	4 : 0.01	
= : 0.31	g : 0.12	e : 0.11	] : 0.11	c : 0.07	d : 0.07	i : 0.05	f : 0.03	b : 0.03	2 : 0.03	4 : 0.01	
= : 0.31	e : 0.16	g : 0.12	i : 0.07	d : 0.07	b : 0.05	c : 0.05	a : 0.03	] : 0.03	f : 0.01	2 : 0.01	4 : 0.01	
= : 0.35	e : 0.14	g : 0.12	i : 0.07	] : 0.05	c : 0.05	d : 0.05	4 : 0.03	2 : 0.03	b : 0.03	f : 0.01	
= : 0.37	e : 0.16	g : 0.11	i : 0.07	] : 0.07	2 : 0.05	d : 0.03	4 : 0.03	f : 0.01	c : 0.01	a : 0.01	b : 0.01	
= : 0.37	e : 0.14	g : 0.12	2 : 0.09	i : 0.07	] : 0.05	d : 0.03	c : 0.03	4 : 0.03	3 : 0.01	
= : 0.33	e : 0.16	g : 0.09	c : 0.07	i : 0.07	2 : 0.07	3 : 0.05	d : 0.03	4 : 0.03	] : 0.01	b : 0.01	: : 0.01	
= : 0.27	e : 0.12	c : 0.11	g : 0.09	i : 0.07	3 : 0.07	f : 0.05	d : 0.03	: : 0.03	2 : 0.03	4 : 0.01	b : 0.01	F : 0.01	] : 0.01	
= : 0.18	] : 0.14	e : 0.12	c : 0.07	2 : 0.07	g : 0.07	f : 0.05	3 : 0.05	i : 0.03	: : 0.03	4 : 0.03	d : 0.03	G : 0.01	F : 0.01	a : 0.01	
= : 0.20	b : 0.09	e : 0.09	c : 0.09	2 : 0.07	d : 0.07	] : 0.05	f : 0.05	g : 0.05	i : 0.03	: : 0.03	4 : 0.03	3 : 0.03	G : 0.01	F : 0.01	a : 0.01	
= : 0.18	b : 0.12	c : 0.09	d : 0.09	e : 0.07	f : 0.05	2 : 0.05	g : 0.05	i : 0.03	] : 0.03	4 : 0.03	3 : 0.03	: : 0.03	C : 0.01	G : 0.01	F : 0.01	a : 0.01	

#score	833.3132139826312
#seq	54
#width	39
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890NIT_EWSR1_transcript_m3_run1.txt

#BEAR
eeeeaddddoooooodddd22a]ee	chr19:800029-800265(+)$1	236	6	31	14.2964
c!!eeeeeooooooeeeee]ccc]b	chr3:126711372-126711627(+)$1	255	86	111	11.4139
e!!dddd[aooooooa]dddd22ee	chr16:88821715-88821964(-)$1	249	91	116	12.7776
!!eeeee[aooooooaeeeee]ddd	chr22:50016958-50017210(-)$1	252	59	84	12.1956
ccc[eeeeeooooooeeeee]ccc=	chr19:18533780-18534066(+)$1	286	217	242	11.7386
fffff[cccooooooccc22fffff	chr11:65211054-65211314(+)$1	260	166	191	10.3224
e[bb[ddddoooooodddd]bbeee	chr16:88993261-88993561(-)$1	300	244	269	14.3562
""ccc[ddddnnnnndddd]cccgg	chr7:1490759-1490986(-)$1	227	153	178	11.4627
ddd[eeeeeooooooeeeee333dd	chr7:1491909-1492183(-)$1	274	122	147	12.1002
!!cccddddoooooodddd]ccc]c	chr22:50009418-50009646(-)$1	228	104	129	15.5401
$$gggggggooooooggggggg22b	chr19:41110204-41110447(+)$1	243	146	171	10.6616
[ddddaddddnnnnndddd]a]ddd	chr19:5097651-5097896(+)$1	245	184	209	10.7334
e"""eeeeeooooooeeeee22eee	chr16:88555774-88556144(+)$1	370	195	220	12.3295
d"""eeeeeooooooeeeee333dd	chr16:89369518-89369783(-)$1	265	225	250	12.7138
eee[ccc[ddddllldddd]ccc]e	chr16:85627761-85628021(+)$1	260	212	237	9.7580
eeeee[ddddnnnnndddd]eeeee	chr14:105259023-105259305(-)$1	282	19	44	10.6661
eeee[ddddoooooodddd]eeeee	chr16:31198363-31198723(+)$1	360	277	302	14.7631
[ccc[ddddoooooodddd]ccc22	chr22:49958990-49959211(-)$1	221	38	63	14.8280
cc"""ddddoooooodddd22cccC	chr6:52227576-52227942(+)$1	366	1	26	13.7417
!!dddd[aooooooa]dddd4444b	chr5:133340035-133340325(-)$1	290	154	179	12.0525
$$$$$ddddoooooodddd4444dd	chr9:140266027-140266318(-)$1	291	197	222	14.3934
eeeee[cccooooooccceeeeecc	chr7:127669789-127670030(+)$1	241	182	207	11.5132
%bb!!ddddoooooodddd22bb33	chr9:140073119-140073534(-)$1	415	125	150	13.3320
###eeeeeddddllldddd333eee	chr12:133120685-133120997(+)$1	312	53	78	10.3151
ee"""ddddooooooddddeeeee:	chr4:709994-710257(+)$1	263	6	31	13.4177
dd[ccc[bboooooobb]cccdddd	chr1:2182465-2182747(+)$1	282	59	84	10.4521
e[bb[ddddoooooodddd]bbeee	chr16:88993148-88993406(-)$1	258	89	114	14.3562
ddd!!ddddoooooodddd22dddd	chr2:61764481-61764746(-)$1	265	168	193	14.5243
$$dddd[cccooooooccc]dddd5	chr1:154983220-154983465(+)$1	245	154	179	10.5742
"""a[cccooooooccc]a22dddd	chr7:44156944-44157240(-)$1	296	177	202	11.4771
&&ddddcccooooooccc]ddddgg	chr20:60936099-60936345(-)$1	246	127	152	10.9659
eeeeeddddoooooodddd]eeeee	chr7:2159574-2159830(-)$1	256	140	165	14.5196
c[dddd[bboooooobb]dddd]cc	chr11:432018-432303(-)$1	285	137	162	10.8672
a[ddddddddnnnnndddd]dddd]	chr2:97560704-97560978(-)$1	274	173	198	11.1158
ddddddd[aooooooa]dddd4444	chr2:219264783-219265101(+)$1	318	101	126	12.3823
!ccc[ddddoooooodddd]ccc]d	chr19:5129478-5129723(+)$1	245	171	196	15.3890
f!!cccddddnnnnndddd]cccff	chr7:44836906-44837185(+)$1	279	81	106	11.2052
&bb!!ddddoooooodddd22bbdd	chr11:1986258-1986592(+)$1	334	71	96	13.3205
b[cccddddoooooodddd]ccc]b	chr8:142437846-142438107(+)$1	261	193	218	14.7369
ee[a[cccddddllldddd]ccc]a	chr16:88565116-88565359(+)$1	243	53	78	10.0669
'''a[ddddoooooodddd]adddd	chr19:5109130-5109353(+)$1	223	138	163	13.7838
""ccc[ddddnnnnndddd]ccc22	chr4:1799455-1799751(+)$1	296	71	96	11.2097
iiiiiiiiiooooooiiiiiiiii:	chr22:50647830-50648087(+)$1	257	105	130	10.2494
eeecccddddnnnnndddd]ccc]e	chr19:1408531-1408812(+)$1	281	232	257	11.1457
!!eeeeecccooooooccc]eeeee	chr4:2335730-2336004(-)$1	274	205	230	11.7258
###ccc[bboooooobb]ccceeee	chr21:46844670-46844929(+)$1	259	219	244	11.2239
dddd[ddddoooooodddddddddd	chr22:49976341-49976609(-)$1	268	145	170	13.9364
c!!bbddddoooooodddd]bb22c	chr7:2166133-2166393(-)$1	260	14	39	13.8840
dddd:ddddooooooddddgggggg	chr1:47695334-47695650(-)$1	316	218	243	12.7462
dddd[ddddoooooodddd]ddddb	chr16:1837761-1838011(+)$1	250	96	121	14.4422
fccc[ddddoooooodddd]ccc]f	chr1:2164865-2165135(+)$1	270	24	49	14.8793
###a[ddddoooooodddda333ee	chr17:75418524-75418800(+)$1	276	195	220	15.4682
f!!bb[cccooooooccc]bb]fff	chr4:1238976-1239265(-)$1	289	141	166	10.4812
eee[ccc[aooooooaccc]eeeee	chrX:39949133-39949387(-)$1	254	160	185	12.3541

#otherMatches

#Seq PSSM
ccugccucaaccuccugaguagccg	chr19:800029-800265(+)$1	236	6	31	14.2964
CAGGCUCUGGGCUGGGGGCGGGGGG	chr3:126711372-126711627(+)$1	255	86	111	11.4139
acguggcgggugggguggccagauu	chr16:88821715-88821964(-)$1	249	91	116	12.7776
ACGGGGCAcagcagaggccucaccu	chr22:50016958-50017210(-)$1	252	59	84	12.1956
CAUGAAUCACAGCCAUGGUUGGUGU	chr19:18533780-18534066(+)$1	286	217	242	11.7386
CCCUGCGCCCCAGAUGGUUCUAGGG	chr11:65211054-65211314(+)$1	260	166	191	10.3224
GCGGGGGCCGGACGGGGCUGCCCUG	chr16:88993261-88993561(-)$1	300	244	269	14.3562
GUCCUCUUGGCGUCCCCAGAAGGGC	chr7:1490759-1490986(-)$1	227	153	178	11.4627
GGGAGGGAGAGCCGGCUCCUAAGCC	chr7:1491909-1492183(-)$1	274	122	147	12.1002
UUGACCUGCCGCGCCGCAGUGUUUU	chr22:50009418-50009646(-)$1	228	104	129	15.5401
GGGUUCCGUCGGACUACGGAAUGGG	chr19:41110204-41110447(+)$1	243	146	171	10.6616
CUCCUGUGGGAGGUGCCCAGCAAGG	chr19:5097651-5097896(+)$1	245	184	209	10.7334
CAGGCAGGCGGUCAGGCCUGAAGGG	chr16:88555774-88556144(+)$1	370	195	220	12.3295
UUCCUGGGAGAAUGAUCCCACUUGG	chr16:89369518-89369783(-)$1	265	225	250	12.7138
GCCCUGAGUCUCCAGGGGAAUUGUG	chr16:85627761-85628021(+)$1	260	212	237	9.7580
GUGUUCAAUUACAUGGAUUUGACAC	chr14:105259023-105259305(-)$1	282	19	44	10.6661
GAAUGGUGUCAAUGAAUGCAAUUCU	chr16:31198363-31198723(+)$1	360	277	302	14.7631
UGCCUGUUCCCUACUGGACUGGCUU	chr22:49958990-49959211(-)$1	221	38	63	14.8280
GGAGAGCCCGAGGAAGGGCAGCCCG	chr6:52227576-52227942(+)$1	366	1	26	13.7417
GGGCGGGCAGAGAAGGCCGCACAGG	chr5:133340035-133340325(-)$1	290	154	179	12.0525
UCAGCUCAGGGUGCACUGAUCAUGU	chr9:140266027-140266318(-)$1	291	197	222	14.3934
AGGCCAUGGAAGGAGCCAGGCCUGA	chr7:127669789-127670030(+)$1	241	182	207	11.5132
ACCAAGGGAACUUACUCCUAGGGGA	chr9:140073119-140073534(-)$1	415	125	150	13.3320
UAGGGGCCCCGAGCCUCGGUGCGGC	chr12:133120685-133120997(+)$1	312	53	78	10.3151
GGCGUGGGUGCUGGGACCCUCUAGA	chr4:709994-710257(+)$1	263	6	31	13.4177
GACGUGGGGCACUGACCGCACUCUU	chr1:2182465-2182747(+)$1	282	59	84	10.4521
GCGGGGGCCGGACGGGGCUGCCCUG	chr16:88993148-88993406(-)$1	258	89	114	14.3562
ggcgggccgggggcgcggcgggCCC	chr2:61764481-61764746(-)$1	265	168	193	14.5243
UCCAUCAUCCCUGGCAGGAAGAUGU	chr1:154983220-154983465(+)$1	245	154	179	10.5742
GGAGGCCAUCAGAUUGGGUGAGACC	chr7:44156944-44157240(-)$1	296	177	202	11.4771
AUCUCUCUGGCACAGCAGCAGAGGC	chr20:60936099-60936345(-)$1	246	127	152	10.9659
GGUCCCCAGGGAGAGCUGGAGGGCC	chr7:2159574-2159830(-)$1	256	140	165	14.5196
GGCUCUGCCAGGACAGGGAGGGGCC	chr11:432018-432303(-)$1	285	137	162	10.8672
UGCUCAUGGUGAUGGACUGUUGGGG	chr2:97560704-97560978(-)$1	274	173	198	11.1158
CGGGGCUGCGGGGAGGGGGCCGAAG	chr2:219264783-219265101(+)$1	318	101	126	12.3823
ccuuccaguuuuagcacugaaagcc	chr19:5129478-5129723(+)$1	245	171	196	15.3890
UCUUCCAUUUGGAUAAAGUAGGAAU	chr7:44836906-44837185(+)$1	279	81	106	11.2052
AUGGAUGGCACACCCGCCGAACACU	chr11:1986258-1986592(+)$1	334	71	96	13.3205
CAGCACAAGCUGGGCCUUGCUGCAG	chr8:142437846-142438107(+)$1	261	193	218	14.7369
UCACAUUGGGCCUGCGGCUGCAGAG	chr16:88565116-88565359(+)$1	243	53	78	10.0669
ACAGACCAGAGCUUCCUGGCCGCCU	chr19:5109130-5109353(+)$1	223	138	163	13.7838
AGUGUGGGCCCUUCUGGCUGGCAGG	chr4:1799455-1799751(+)$1	296	71	96	11.2097
GCUGGGGCAGCCUGGUgcuccggca	chr22:50647830-50648087(+)$1	257	105	130	10.2494
GGCCGGGAAACCUCAUUUCGCUGUG	chr19:1408531-1408812(+)$1	281	232	257	11.1457
ACUCAGGGAACUUCCUUUCACCUGA	chr4:2335730-2336004(-)$1	274	205	230	11.7258
UCCAGAACUUUCUUCAGAUCUCUCG	chr21:46844670-46844929(+)$1	259	219	244	11.2239
GUGUAUGUCAGUGGAGGCAACACGG	chr22:49976341-49976609(-)$1	268	145	170	13.9364
UCACUCUGCUUCCUUGCAGAAGGAA	chr7:2166133-2166393(-)$1	260	14	39	13.8840
UCCCUUCGCGGUGUAGCGGCAGCCG	chr1:47695334-47695650(-)$1	316	218	243	12.7462
CCCUGUGGGUGGCUUCCCAGAGGGC	chr16:1837761-1838011(+)$1	250	96	121	14.4422
AGAUGCCUGAAUUCCCAGGGGUCUU	chr1:2164865-2165135(+)$1	270	24	49	14.8793
AUGGUCACCUCGGAUGGUGCAGGGG	chr17:75418524-75418800(+)$1	276	195	220	15.4682
UGCUCGCUGAACAAACAGGGAAACG	chr4:1238976-1239265(-)$1	289	141	166	10.4812
GGAAAGGACAAGAUAGCCUAUCCCC	chrX:39949133-39949387(-)$1	254	160	185	12.3541

#DB
(((((((((......))))..).))	chr19:800029-800265(+)$1	1	6	31	14.2964
(..(((((......))))).))).)	chr3:126711372-126711627(+)$1	1	86	111	11.4139
(..((((.(......).))))..))	chr16:88821715-88821964(-)$1	1	91	116	12.7776
..(((((.(......)))))).)))	chr22:50016958-50017210(-)$1	1	59	84	12.1956
(((.(((((......))))).))))	chr19:18533780-18534066(+)$1	1	217	242	11.7386
(((((.(((......)))..)))))	chr11:65211054-65211314(+)$1	1	166	191	10.3224
(.((.((((......)))).)))))	chr16:88993261-88993561(-)$1	1	244	269	14.3562
..(((.((((.....)))).)))))	chr7:1490759-1490986(-)$1	1	153	178	11.4627
(((.(((((......)))))...))	chr7:1491909-1492183(-)$1	1	122	147	12.1002
..(((((((......)))).))).)	chr22:50009418-50009646(-)$1	1	104	129	15.5401
..(((((((......)))))))..)	chr19:41110204-41110447(+)$1	1	146	171	10.6616
.(((((((((.....)))).).)))	chr19:5097651-5097896(+)$1	1	184	209	10.7334
(...(((((......)))))..)))	chr16:88555774-88556144(+)$1	1	195	220	12.3295
(...(((((......)))))...))	chr16:89369518-89369783(-)$1	1	225	250	12.7138
(((.(((.((((...)))).))).)	chr16:85627761-85628021(+)$1	1	212	237	9.7580
(((((.((((.....)))).)))))	chr14:105259023-105259305(-)$1	1	19	44	10.6661
((((.((((......)))).)))))	chr16:31198363-31198723(+)$1	1	277	302	14.7631
.(((.((((......)))).)))..	chr22:49958990-49959211(-)$1	1	38	63	14.8280
((...((((......))))..)))(	chr6:52227576-52227942(+)$1	1	1	26	13.7417
..((((.(......).))))....)	chr5:133340035-133340325(-)$1	1	154	179	12.0525
.....((((......))))....))	chr9:140266027-140266318(-)$1	1	197	222	14.3934
(((((.(((......))))))))((	chr7:127669789-127670030(+)$1	1	182	207	11.5132
.((..((((......))))..))..	chr9:140073119-140073534(-)$1	1	125	150	13.3320
...(((((((((...))))...)))	chr12:133120685-133120997(+)$1	1	53	78	10.3151
((...((((......))))))))).	chr4:709994-710257(+)$1	1	6	31	13.4177
((.(((.((......)).)))))))	chr1:2182465-2182747(+)$1	1	59	84	10.4521
(.((.((((......)))).)))))	chr16:88993148-88993406(-)$1	1	89	114	14.3562
(((..((((......))))..))))	chr2:61764481-61764746(-)$1	1	168	193	14.5243
..((((.(((......))).)))).	chr1:154983220-154983465(+)$1	1	154	179	10.5742
...(.(((......))).)..))))	chr7:44156944-44157240(-)$1	1	177	202	11.4771
..(((((((......))).))))))	chr20:60936099-60936345(-)$1	1	127	152	10.9659
(((((((((......)))).)))))	chr7:2159574-2159830(-)$1	1	140	165	14.5196
(.((((.((......)).)))).))	chr11:432018-432303(-)$1	1	137	162	10.8672
(.((((((((.....)))).)))).	chr2:97560704-97560978(-)$1	1	173	198	11.1158
(((((((.(......).))))....	chr2:219264783-219265101(+)$1	1	101	126	12.3823
.(((.((((......)))).))).)	chr19:5129478-5129723(+)$1	1	171	196	15.3890
(..(((((((.....)))).)))))	chr7:44836906-44837185(+)$1	1	81	106	11.2052
.((..((((......))))..))))	chr11:1986258-1986592(+)$1	1	71	96	13.3205
(.(((((((......)))).))).)	chr8:142437846-142438107(+)$1	1	193	218	14.7369
((.(.(((((((...)))).))).)	chr16:88565116-88565359(+)$1	1	53	78	10.0669
...(.((((......)))).)))))	chr19:5109130-5109353(+)$1	1	138	163	13.7838
..(((.((((.....)))).)))..	chr4:1799455-1799751(+)$1	1	71	96	11.2097
(((((((((......))))))))).	chr22:50647830-50648087(+)$1	1	105	130	10.2494
((((((((((.....)))).))).)	chr19:1408531-1408812(+)$1	1	232	257	11.1457
..((((((((......))).)))))	chr4:2335730-2336004(-)$1	1	205	230	11.7258
...(((.((......)).)))))))	chr21:46844670-46844929(+)$1	1	219	244	11.2239
((((.((((......))))))))((	chr22:49976341-49976609(-)$1	1	145	170	13.9364
(..((((((......)))).))..)	chr7:2166133-2166393(-)$1	1	14	39	13.8840
)))).((((......))))((((((	chr1:47695334-47695650(-)$1	1	218	243	12.7462
((((.((((......)))).)))))	chr16:1837761-1838011(+)$1	1	96	121	14.4422
((((.((((......)))).))).)	chr1:2164865-2165135(+)$1	1	24	49	14.8793
...(.((((......)))))...))	chr17:75418524-75418800(+)$1	1	195	220	15.4682
(..((.(((......))).)).)))	chr4:1238976-1239265(-)$1	1	141	166	10.4812
(((.(((.(......)))).)))))	chrX:39949133-39949387(-)$1	1	160	185	12.3541

#PSSM
e : 0.25	d : 0.14	c : 0.09	! : 0.09	f : 0.07	" : 0.05	$ : 0.05	# : 0.05	[ : 0.03	& : 0.03	% : 0.01	a : 0.01	b : 0.01	' : 0.01	i : 0.01	
e : 0.18	! : 0.16	d : 0.14	c : 0.09	[ : 0.09	" : 0.09	$ : 0.05	# : 0.05	b : 0.03	f : 0.01	& : 0.01	' : 0.01	i : 0.01	
d : 0.22	e : 0.18	c : 0.14	! : 0.09	" : 0.09	b : 0.07	# : 0.05	[ : 0.03	f : 0.01	g : 0.01	$ : 0.01	' : 0.01	i : 0.01	
d : 0.20	c : 0.20	e : 0.16	[ : 0.07	b : 0.07	" : 0.07	a : 0.07	! : 0.05	f : 0.01	g : 0.01	$ : 0.01	i : 0.01	
[ : 0.22	e : 0.20	c : 0.18	d : 0.14	! : 0.05	" : 0.03	b : 0.03	a : 0.01	f : 0.01	g : 0.01	$ : 0.01	i : 0.01	: : 0.01	
d : 0.53	e : 0.14	c : 0.14	[ : 0.11	g : 0.01	a : 0.01	i : 0.01	
d : 0.57	e : 0.14	c : 0.14	[ : 0.09	g : 0.01	i : 0.01	
d : 0.53	c : 0.14	e : 0.11	[ : 0.09	b : 0.05	g : 0.01	a : 0.01	i : 0.01	
d : 0.59	c : 0.11	a : 0.07	e : 0.07	o : 0.05	b : 0.05	g : 0.01	i : 0.01	
o : 0.77	d : 0.18	c : 0.03	
o : 0.81	n : 0.12	d : 0.05	
o : 0.81	n : 0.12	d : 0.05	
o : 0.81	n : 0.12	l : 0.05	
o : 0.81	n : 0.12	l : 0.05	
o : 0.75	n : 0.12	l : 0.05	e : 0.01	a : 0.01	c : 0.01	
d : 0.59	e : 0.09	c : 0.09	a : 0.07	b : 0.05	o : 0.03	g : 0.01	] : 0.01	i : 0.01	
d : 0.61	c : 0.14	e : 0.11	b : 0.05	] : 0.03	g : 0.01	i : 0.01	
d : 0.64	c : 0.12	e : 0.11	] : 0.07	g : 0.01	i : 0.01	
d : 0.66	e : 0.12	c : 0.09	] : 0.03	2 : 0.01	g : 0.01	a : 0.01	i : 0.01	
] : 0.46	2 : 0.12	e : 0.12	d : 0.11	g : 0.03	c : 0.03	4 : 0.01	3 : 0.01	i : 0.01	a : 0.01	b : 0.01	
c : 0.25	d : 0.14	e : 0.14	2 : 0.12	b : 0.07	3 : 0.07	g : 0.03	a : 0.03	4 : 0.03	] : 0.01	f : 0.01	i : 0.01	
c : 0.25	d : 0.18	e : 0.14	b : 0.09	3 : 0.07	] : 0.05	4 : 0.05	2 : 0.03	g : 0.03	a : 0.01	f : 0.01	i : 0.01	
c : 0.25	e : 0.22	d : 0.20	2 : 0.05	3 : 0.05	4 : 0.05	] : 0.03	f : 0.03	b : 0.03	i : 0.01	g : 0.01	
e : 0.25	d : 0.25	] : 0.14	c : 0.07	2 : 0.07	f : 0.05	g : 0.05	4 : 0.03	3 : 0.01	i : 0.01	
e : 0.27	d : 0.22	b : 0.09	f : 0.07	c : 0.07	g : 0.05	2 : 0.03	: : 0.03	= : 0.01	C : 0.01	3 : 0.01	5 : 0.01	] : 0.01	4 : 0.01	a : 0.01	

#score	674.9087009300773
#seq	54
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF368MXJ_FAM120A_CDS_m1_run1.txt

#BEAR
c[ccc[eeeee"""cccmmmmccceeeeeccccccee	chr2:44547513-44547776(-)$1	263	33	70	10.8226
ccffffffccc[cccooooooccc]ccc]ffffff]c	chr9:139249995-139250264(+)$1	269	77	114	12.0406
ccc[a[gggggggddddllldddd22gggggggaccc	chr11:126146252-126146497(+)$1	245	74	111	12.4854
[ffffff[dddd[cccmmmmccc333dddd]ffffff	chr12:132401813-132402067(+)$1	254	101	138	11.9708
ddddffffff[cccooooooccc]ffffff4444ddd	chr10:103589514-103589751(-)$1	237	28	65	10.1813
ccc[a[gggggggddddllldddd22gggggggaccc	chr11:126146221-126146452(+)$1	231	105	142	12.4854
[bb[bb!!a!!bb[ccclllccc]bb22a333bb]bb	chr22:37622736-37623043(-)$1	307	108	145	12.1477
:bb[ffffff[a!!ccclllccc22a]ffffff]bb:	chr16:11981330-11981605(-)$1	275	96	133	10.6896
ddd[a"""ddddbbccclllccc333bb]dddd333a	chr7:77166715-77166997(+)$1	282	150	187	13.9052
ccc[gggggggfffffflllffffff333gggggggc	chr19:18548493-18548731(-)$1	238	197	234	11.7511
bb[ccc[ccc!!bb[allla]bb22ccc]cccbb22a	chr5:137688345-137688597(+)$1	252	101	138	12.2597
iiiii"""bb"""ddddlllddddbb333iiiiiiii	chr11:62482646-62482883(-)$1	237	73	110	13.1312
[bbdddd[cccbb[bblllbb]bb]ccc]dddd333b	chr5:137688423-137688669(+)$1	246	188	225	10.2518
ccc!!dddd!!bb[a[ammmma]a]bb333dddd22c	chr19:1555249-1555530(-)$1	281	6	43	11.0410
dddd[ccc[dddd[ccclllccc333dddd]ccc]dd	chr1:109473988-109474249(-)$1	261	206	243	13.7468
eecccddddbb[cccnnnnnccc]bb]dddd]ccc]e	chr1:205683472-205683717(-)$1	245	171	208	10.8207
eeee####gggggggnnnnngggggggeeeee]ccc]	chr11:126146110-126146397(+)$1	287	147	184	10.3951
[a[ccc!!bb[a!!bbmmmmbb4444a]bb22ccc]a	chr4:52709720-52709983(+)$1	263	126	163	11.7132
============"""bblllbb333============	chr16:2867275-2867541(+)$1	266	110	147	14.9019
:cccccc[ccc[ccclllcccccc]ccc]cccggggg	chr16:448890-449114(+)$1	224	56	93	11.2273
cc[dddd####fffffflllffffff4444dddd]cc	chr5:126889387-126889643(+)$1	256	46	83	11.4692
h[ddddbbccc!!cccmmmmccc22ccc]bb]ddddh	chr19:2270531-2270772(+)$1	241	154	191	11.4862
bb[ccc"""ccc[ddddllldddd]ccc333ccc333	chr19:6413377-6413656(-)$1	279	49	86	14.4397
!!a!!dddd####cccmmmmccc4444dddd22a22b	chr8:145730527-145730791(-)$1	264	146	183	12.3966
[bb[a!!ccc[cccooooooccc]ccc22a]bb]bb]	chr9:140323184-140323437(+)$1	253	166	203	11.8426
e[dddd!!ccc"""ccclllccc333ccc22ddddee	chr22:30732916-30733223(-)$1	307	251	288	15.1157
gggggg[ccc[ccc[bblllbbccccccggggggg]c	chr19:49964946-49965219(+)$1	273	84	121	13.5493
dddccc"""ccc[a!!ammmma22a]ccc22ccc333	chr8:30669762-30670091(-)$1	329	43	80	12.3359
fffff!!a[a[fffffflllffffff]aa22ffffff	chr19:2270300-2270560(+)$1	260	210	247	10.5999
dd!!eeeeeccc!!ddddlllddddccc]eeeee22d	chr22:39917996-39918227(+)$1	231	75	112	11.2222
f:eeeee"""ccc[ccclllccc88888888ccc333	chr11:62290069-62290320(-)$1	251	152	189	10.9358
!!dddd[dddd"""bbmmmmbb4444ddddddddeee	chr19:3530587-3530907(+)$1	320	255	292	10.6948
ddeeeeeccc[a[a[bblllbb]a]a]ccc]eeeee]	chr12:132402869-132403160(+)$1	291	116	153	12.3515
iiiii"""bb"""ddddlllddddbb333iiiiiiii	chr11:62482708-62482948(-)$1	240	138	175	13.1312
dd!!eeeeeccc!!ddddlllddddccc]eeeee22d	chr22:39918027-39918261(+)$1	234	44	81	11.2222
gggccc[ccc[cccccclllccc22ccc]cccccc]g	chr2:54197716-54197970(-)$1	254	83	120	15.7375
ee[a[cccbb[ddddnnnnndddd]bb4444ccc]a]	chr19:47778067-47778305(+)$1	238	79	116	10.9157
ggggggg[dddd!!bbnnnnnbb22dddd]ggggggg	chr19:5130925-5131211(+)$1	286	95	132	11.5338
!!ggggggg[ddddbbnnnnnbb]dddd333gggggg	chr5:159492169-159492444(+)$1	275	158	195	11.1548
f$$$$$dddd"""cccmmmmccc22dddd4444ffff	chr11:118472290-118472576(+)$1	286	180	217	11.3728
ffffff!!ccc"""bbmmmmbb333cccffffffccc	chr22:39131168-39131454(-)$1	286	3	40	11.9234
ffff[eeeeebb!!ccclllccc22bb]eeeee]fff	chr19:49964856-49965141(+)$1	285	55	92	12.3353
deeeee"""ccc[ddddmmmmddddccc4444eeeee	chr1:183521997-183522262(+)$1	265	185	222	11.0538
ii[eeeee####cccnnnnnccc22eeeeeiiiiiii	chr17:37561380-37561638(-)$1	258	72	109	13.1220
d[aggggggg[ccc[bbmmmmbbcccggggggg]a]d	chr17:79826291-79826563(-)$1	272	176	213	10.7664
ggggggg[cccrrrrrrrrrccc333gggggggdddd	chr1:156713856-156714059(-)$1	203	151	188	10.7957
g####ddddccc[cccmmmmccc]ccc4444dddd44	chr5:652941-653227(+)$1	286	19	56	12.5803
=======$$$$$cccnnnnnccc4444==========	chr19:6413618-6413867(-)$1	249	202	239	13.8004
ii[eeeee####cccnnnnnccc22eeeeeiiiiiii	chr17:37561438-37561682(-)$1	244	116	153	13.1220
iiiiiiiii!!cccccclllccc333ccc22iiiiii	chr1:156713859-156714085(-)$1	226	179	216	15.8863
gggccc[ccc[cccccclllccc22ccc]cccccc]g	chr2:54197770-54198041(-)$1	271	154	191	15.7375
""eeeee!!gggggggnnnnnggggggg22eeeee]e	chr16:31501538-31501783(-)$1	245	162	199	10.7977
]ddddccc[eeeeeccclllccc22eeeee]ccceee	chr22:29191277-29191547(-)$1	270	118	155	12.1416
eeeee[a[iiiiiiiiillliiiiiiiii22a]eeee	chr11:62296915-62297194(-)$1	279	164	201	12.1165
ccc[eeeee!!ccc[cccmmmmcccccc]eeeee]cc	chr10:49659492-49659801(-)$1	309	239	276	10.6044
c[dddd"""dddd[ccclllccc]dddddddd]ccc]	chr15:35271699-35271985(-)$1	286	19	56	12.7705
dddd!!dddd[cccooooooccc]dddd]dddd]ccc	chr14:69928301-69928547(+)$1	246	138	175	11.5140
[bb[dddd####cccnnnnnccc333dddd]bba22c	chr12:122186052-122186352(+)$1	300	82	119	12.8168
$$$==============lll==============eee	chr11:62293156-62293424(-)$1	268	159	196	13.2812
fff[a!!a"""ddddnnnnndddd333a22a]fffff	chr12:120534321-120534585(-)$1	264	189	226	11.7832
dd!!eeeeeccc!!ddddlllddddccc]eeeee22d	chr22:39917894-39918196(+)$1	302	177	214	11.2222

#otherMatches

#Seq PSSM
AAUAGCAUGCUCGAUUGGAAACAAAGCAUCUAUCUCU	chr2:44547513-44547776(-)$1	263	33	70	10.8226
GCAGCCCCCGGUCUCGUCUGGGGGUCUGCGGGGCUAG	chr9:139249995-139250264(+)$1	269	77	114	12.0406
UAGAGACUCCGCUUGUUGCAGACACCAGUGGAGCCUA	chr11:126146252-126146497(+)$1	245	74	111	12.4854
CGGGAGUCAGGAUGCUCCUGAGCCCUUCCUUGCUCUC	chr12:132401813-132402067(+)$1	254	101	138	11.9708
GAGGGGCCAGGUGUGUGUCUGCAGUUGGCCGGGUCUU	chr10:103589514-103589751(-)$1	237	28	65	10.1813
UAGAGACUCCGCUUGUUGCAGACACCAGUGGAGCCUA	chr11:126146221-126146452(+)$1	231	105	142	12.4854
CGUGGAAGGGGUUGUAUGGCAUAGGAGACAUGUUGGC	chr22:37622736-37623043(-)$1	307	108	145	12.1477
UCACAAUUCUAGAUGCCCCUGGCCACAAGAGUUUUGU	chr16:11981330-11981605(-)$1	275	96	133	10.6896
GGAGCAAGUGGAGAUCCUGAGGAAAUUCAUCCAGAGG	chr7:77166715-77166997(+)$1	282	150	187	13.9052
GCCCGGCAGGUGCCCCGGCUCGGGGUCAUGCUUGUCG	chr19:18548493-18548731(-)$1	238	197	234	11.7511
ggcggcgggcgggagcgcgggucaggccggccccggc	chr5:137688345-137688597(+)$1	252	101	138	12.2597
AUACUACAGGAAUUACUACGGGUACCAAGGGUAUCGG	chr11:62482646-62482883(-)$1	237	73	110	13.1312
GCACUCGAGCCUGGCGGGCCGGCACGGUGCGGGCCAU	chr5:137688423-137688669(+)$1	246	188	225	10.2518
gccaggggugggcgcgggagacggggcgggacccggg	chr19:1555249-1555530(-)$1	281	6	43	11.0410
GCAGUCUGUGAUCCAGUGUUACUCCAGGUCCCAGUCU	chr1:109473988-109474249(-)$1	261	206	243	13.7468
GCCAAUGGAGUGACUGAACUGGUGACAUCUGUUUGAG	chr1:205683472-205683717(-)$1	245	171	208	10.8207
CUGCAGUUCGUAACCGCACUGGUUGUGGCAGGUAUGU	chr11:126146110-126146397(+)$1	287	147	184	10.3951
GGGCACAAGGGUGAGGAUUUCCAAAGGGCUGAGUGGU	chr4:52709720-52709983(+)$1	263	126	163	11.7132
GACGGGAGGUGGAGGCCGCGGGGAGUCACUUCUUGUC	chr16:2867275-2867541(+)$1	266	110	147	14.9019
AAAGGGUGAGGUGGCAGUGCCUCUGACCUCUUGCCUU	chr16:448890-449114(+)$1	224	56	93	11.2273
UUUUGAUGUUUUGAGAAUUGUUCUCAUAGAAUCACAA	chr5:126889387-126889643(+)$1	256	46	83	11.4692
CUCAGCCCCGGAUCGGGAGGUUGGGCCGCGGUGCUGG	chr19:2270531-2270772(+)$1	241	154	191	11.4862
CUUGGACCAGGUGUUGUAUUGCAGGACCCCUUCCCCC	chr19:6413377-6413656(-)$1	279	49	86	14.4397
AGCAGCUUCAGCACCGUCUGCGGAAAGGAAGGGGAAG	chr8:145730527-145730791(-)$1	264	146	183	12.3966
GUCGGCACAGUGCCAGCUGGGGCUCUGGACAGAGGCG	chr9:140323184-140323437(+)$1	253	166	203	11.8426
UUCAGUCCCGCCCCUGUCGUACACUUGCGAAACUGAC	chr22:30732916-30733223(-)$1	307	251	288	15.1157
AAGGUGGCCUUCUGCGGAGCCCCGGAGGUACCUUCGG	chr19:49964946-49965219(+)$1	273	84	121	13.5493
ggcggcggagggagaggggagcggcgcccgggccggg	chr8:30669762-30670091(-)$1	329	43	80	12.3359
CCGGGGAGCUGGGGGUGGCGCACUCCGACAGCCCGGC	chr19:2270300-2270560(+)$1	260	210	247	10.5999
CAGAUCAUUCCUUUAGUUUAGAGCUGGGCAGUGAAGU	chr22:39917996-39918227(+)$1	231	75	112	11.2222
GGAUAUUAAAGGCCCCAAAGUGGAUAUUAAUGCCCCA	chr11:62290069-62290320(-)$1	251	152	189	10.9358
CUGGUCUGAGCGGGUGAGUGCAGAGGGCUUGGCCCCC	chr19:3530587-3530907(+)$1	320	255	292	10.6948
UGGGGGCCACGGUGUCUGCUGGUCCUGGUGUGCCCCU	chr12:132402869-132403160(+)$1	291	116	153	12.3515
AUACUACAGGAAUUACUACGGGUACCAAGGGUAUCGG	chr11:62482708-62482948(-)$1	240	138	175	13.1312
CAGAUCAUUCCUUUAGUUUAGAGCUGGGCAGUGAAGU	chr22:39918027-39918261(+)$1	234	44	81	11.2222
ccccggagccgggcgggcgucccgagccgggcccgcg	chr2:54197716-54197970(-)$1	254	83	120	15.7375
CUGCGGCGCGGAGCCGAGUGGGCUGCGGGGAUGCGGG	chr19:47778067-47778305(+)$1	238	79	116	10.9157
GGGGAGCGUGGGACCAGCACUUGAGCCCGGGUUCUCC	chr19:5130925-5131211(+)$1	286	95	132	11.5338
UCCAGGAAGAAGCCCAUUUGUUGAGGCUGACCUUCCU	chr5:159492169-159492444(+)$1	275	158	195	11.1548
AAUAUUAAAGAUAGCUGAGAAGCACCUUUCAAAUGGC	chr11:118472290-118472576(+)$1	286	180	217	11.3728
CCUAGACCUGUCUUUGGGGCCAUUAGCAUCUGGGGUU	chr22:39131168-39131454(-)$1	286	3	40	11.9234
CGGCGCCCCUCCUCCUGGCCCAGCUGGCGGGGGAGCU	chr19:49964856-49965141(+)$1	285	55	92	12.3353
CGUAGCCCACAGAGGGCCCAGGCCCCUGCCCAGCUGC	chr1:183521997-183522262(+)$1	265	185	222	11.0538
CCCAGAUCAAAGAAUCCCGAGUUAGGAUCUGGAUGAA	chr17:37561380-37561638(-)$1	258	72	109	13.1220
UGCCCCUGGACGUGUGCGUCUGCUGCUCCGGGGUGGA	chr17:79826291-79826563(-)$1	272	176	213	10.7664
UGGGGUAUCCCACAGGAGCAGGGCUUUGCCUCAGGGG	chr1:156713856-156714059(-)$1	203	151	188	10.7957
GAUGGGGCCACAGAGAUAGGUCUGUGUGCAGGGCCAG	chr5:652941-653227(+)$1	286	19	56	12.5803
AAGGAAAAAAAAAAGUCACUCUUGCUAUUUCUUUUUU	chr19:6413618-6413867(-)$1	249	202	239	13.8004
CCCAGAUCAAAGAAUCCCGAGUUAGGAUCUGGAUGAA	chr17:37561438-37561682(-)$1	244	116	153	13.1220
GGGUAUCCCACAGGAGCAGGGCUUUGCCUCAGGGGUG	chr1:156713859-156714085(-)$1	226	179	216	15.8863
ccccggagccgggcgggcgucccgagccgggcccgcg	chr2:54197770-54198041(-)$1	271	154	191	15.7375
AAUUGAGGCCCUGCAGUUAGUUUGCGGGAACUCAGCU	chr16:31501538-31501783(-)$1	245	162	199	10.7977
CCCUCAGAGAAUGAUCACCCUGAAUUCAUUGUCUCAG	chr22:29191277-29191547(-)$1	270	118	155	12.1416
UGGAUGUGAAUGUUGGUGAUAUUGAUAUUGAAGGUCC	chr11:62296915-62297194(-)$1	279	164	201	12.1165
gacguggggcagccgagagaguucuggcaucucaggu	chr10:49659492-49659801(-)$1	309	239	276	10.6044
UACUUAAAUAUAGUGGAAAAUCCUCUAUUGAGAAUGU	chr15:35271699-35271985(-)$1	286	19	56	12.7705
AUCGGAGUGUAUUAAGCCCCUGAAACACAUGGUAGCU	chr14:69928301-69928547(+)$1	246	138	175	11.5140
ACUGGGGUAGAAGGUGGGAGGCUGGGGCCCGGGGAGU	chr12:122186052-122186352(+)$1	300	82	119	12.8168
AAGUGGACAUUGAUGUCCCAGAUGUUAAUGUUCAGGG	chr11:62293156-62293424(-)$1	268	159	196	13.2812
AGGUCUUGCCCUUUGGCCAACAGAUUUCUUGUCCUGC	chr12:120534321-120534585(-)$1	264	189	226	11.7832
CAGAUCAUUCCUUUAGUUUAGAGCUGGGCAGUGAAGU	chr22:39917894-39918196(+)$1	302	177	214	11.2222

#DB
(.(((.(((((...(((....))))))))))))))))	chr2:44547513-44547776(-)$1	1	33	70	10.8226
(((((((((((.(((......))).))).)))))).)	chr9:139249995-139250264(+)$1	1	77	114	12.0406
(((.(.(((((((((((...))))..)))))))))))	chr11:126146252-126146497(+)$1	1	74	111	12.4854
.((((((.((((.(((....)))...)))).))))))	chr12:132401813-132402067(+)$1	1	101	138	11.9708
((((((((((.(((......))).))))))....)))	chr10:103589514-103589751(-)$1	1	28	65	10.1813
(((.(.(((((((((((...))))..)))))))))))	chr11:126146221-126146452(+)$1	1	105	142	12.4854
.((.((..(..((.(((...))).))..)...)).))	chr22:37622736-37623043(-)$1	1	108	145	12.1477
.((.((((((.(..(((...)))..).)))))).)).	chr16:11981330-11981605(-)$1	1	96	133	10.6896
(((.(...(((((((((...)))...)).))))...)	chr7:77166715-77166997(+)$1	1	150	187	13.9052
(((.(((((((((((((...))))))...))))))))	chr19:18548493-18548731(-)$1	1	197	234	11.7511
((.(((.(((..((.(...).))..))).)))))..)	chr5:137688345-137688597(+)$1	1	101	138	12.2597
(((((...((...((((...))))))...))))))))	chr11:62482646-62482883(-)$1	1	73	110	13.1312
.((((((.(((((.((...)).)).))).))))...)	chr5:137688423-137688669(+)$1	1	188	225	10.2518
(((..((((..((.(.(....).).))...))))..)	chr19:1555249-1555530(-)$1	1	6	43	11.0410
((((.(((.((((.(((...)))...)))).))).))	chr1:109473988-109474249(-)$1	1	206	243	13.7468
(((((((((((.(((.....))).)).)))).))).)	chr1:205683472-205683717(-)$1	1	171	208	10.8207
((((....(((((((.....)))))))))))).))).	chr11:126146110-126146397(+)$1	1	147	184	10.3951
.(.(((..((.(..((....))....).))..))).)	chr4:52709720-52709983(+)$1	1	126	163	11.7132
((((((((((((...((...))...))))))))))))	chr16:2867275-2867541(+)$1	1	110	147	14.9019
.((((((.(((.(((...)))))).))).)))(((((	chr16:448890-449114(+)$1	1	56	93	11.2273
((.((((....((((((...))))))....)))).))	chr5:126889387-126889643(+)$1	1	46	83	11.4692
(.(((((((((..(((....)))..))).)).)))))	chr19:2270531-2270772(+)$1	1	154	191	11.4862
((.(((...(((.((((...)))).)))...)))...	chr19:6413377-6413656(-)$1	1	49	86	14.4397
..(..((((....(((....)))....))))..)..)	chr8:145730527-145730791(-)$1	1	146	183	12.3966
.((.(..(((.(((......))).)))..).)).)).	chr9:140323184-140323437(+)$1	1	166	203	11.8426
(.((((..(((...(((...)))...)))..))))))	chr22:30732916-30733223(-)$1	1	251	288	15.1157
((((((.(((.(((.((...))))))))))))))).)	chr19:49964946-49965219(+)$1	1	84	121	13.5493
((((((...(((.(..(....)..).)))..)))...	chr8:30669762-30670091(-)$1	1	43	80	12.3359
(((((..(.(.((((((...)))))).))..))))))	chr19:2270300-2270560(+)$1	1	210	247	10.5999
((..((((((((..((((...))))))).)))))..)	chr22:39917996-39918227(+)$1	1	75	112	11.2222
).(((((...(((.(((...)))........)))...	chr11:62290069-62290320(-)$1	1	152	189	10.9358
..((((.((((...((....))....)))))))))))	chr19:3530587-3530907(+)$1	1	255	292	10.6948
((((((((((.(.(.((...)).).).))).))))).	chr12:132402869-132403160(+)$1	1	116	153	12.3515
(((((...((...((((...))))))...))))))))	chr11:62482708-62482948(-)$1	1	138	175	13.1312
((..((((((((..((((...))))))).)))))..)	chr22:39918027-39918261(+)$1	1	44	81	11.2222
((((((.(((.((((((...)))..))).)))))).)	chr2:54197716-54197970(-)$1	1	83	120	15.7375
((.(.(((((.((((.....)))).))....))).).	chr19:47778067-47778305(+)$1	1	79	116	10.9157
(((((((.((((..((.....))..)))).)))))))	chr19:5130925-5131211(+)$1	1	95	132	11.5338
..(((((((.((((((.....)).))))...))))))	chr5:159492169-159492444(+)$1	1	158	195	11.1548
(.....((((...(((....)))..))))....))))	chr11:118472290-118472576(+)$1	1	180	217	11.3728
((((((..(((...((....))...)))))))))(((	chr22:39131168-39131454(-)$1	1	3	40	11.9234
((((.(((((((..(((...)))..)).))))).)))	chr19:49964856-49965141(+)$1	1	55	92	12.3353
)(((((...(((.((((....)))))))....)))))	chr1:183521997-183522262(+)$1	1	185	222	11.0538
((.(((((....(((.....)))..))))))))))))	chr17:37561380-37561638(-)$1	1	72	109	13.1220
(.((((((((.(((.((....)))))))))))).).)	chr17:79826291-79826563(-)$1	1	176	213	10.7664
(((((((.(((.........)))...)))))))))))	chr1:156713856-156714059(-)$1	1	151	188	10.7957
(....(((((((.(((....))).)))....))))..	chr5:652941-653227(+)$1	1	19	56	12.5803
(((((((.....(((.....)))....))))))))))	chr19:6413618-6413867(-)$1	1	202	239	13.8004
((.(((((....(((.....)))..))))))))))))	chr17:37561438-37561682(-)$1	1	116	153	13.1220
(((((((((..((((((...)))...)))..))))))	chr1:156713859-156714085(-)$1	1	179	216	15.8863
((((((.(((.((((((...)))..))).)))))).)	chr2:54197770-54198041(-)$1	1	154	191	15.7375
..(((((..(((((((.....)))))))..))))).)	chr16:31501538-31501783(-)$1	1	162	199	10.7977
.))))(((.((((((((...)))..))))).)))(((	chr22:29191277-29191547(-)$1	1	118	155	12.1416
(((((.(.(((((((((...)))))))))..).))))	chr11:62296915-62297194(-)$1	1	164	201	12.1165
(((.(((((..(((.(((....)))))).))))).))	chr10:49659492-49659801(-)$1	1	239	276	10.6044
(.((((...((((.(((...))).)))))))).))).	chr15:35271699-35271985(-)$1	1	19	56	12.7705
((((..((((.(((......))).)))).)))).)))	chr14:69928301-69928547(+)$1	1	138	175	11.5140
.((.((((....(((.....)))...)))).)))..)	chr12:122186052-122186352(+)$1	1	82	119	12.8168
...((((((((((((((...)))))))))))))))))	chr11:62293156-62293424(-)$1	1	159	196	13.2812
(((.(..(...((((.....))))...)..).)))))	chr12:120534321-120534585(-)$1	1	189	226	11.7832
((..((((((((..((((...))))))).)))))..)	chr22:39917894-39918196(+)$1	1	177	214	11.2222

#PSSM
d : 0.18	c : 0.14	[ : 0.09	g : 0.09	f : 0.09	i : 0.08	e : 0.08	! : 0.04	: : 0.03	b : 0.03	= : 0.03	h : 0.01	" : 0.01	] : 0.01	$ : 0.01	
d : 0.16	c : 0.13	b : 0.11	[ : 0.08	f : 0.08	i : 0.08	e : 0.08	g : 0.08	! : 0.04	= : 0.03	$ : 0.03	a : 0.01	: : 0.01	# : 0.01	" : 0.01	
d : 0.16	c : 0.13	[ : 0.11	f : 0.09	e : 0.09	g : 0.09	b : 0.08	i : 0.04	! : 0.04	= : 0.03	a : 0.03	$ : 0.03	# : 0.01	
[ : 0.16	d : 0.16	c : 0.14	e : 0.13	f : 0.08	! : 0.08	g : 0.08	i : 0.04	= : 0.04	a : 0.01	$ : 0.01	# : 0.01	
e : 0.18	c : 0.14	d : 0.13	f : 0.09	g : 0.09	a : 0.08	i : 0.04	! : 0.04	[ : 0.04	= : 0.04	# : 0.03	b : 0.01	$ : 0.01	
d : 0.18	e : 0.18	c : 0.16	g : 0.09	f : 0.08	[ : 0.06	! : 0.06	" : 0.04	= : 0.04	b : 0.01	# : 0.01	$ : 0.01	i : 0.01	
e : 0.18	d : 0.14	g : 0.11	! : 0.11	" : 0.11	[ : 0.08	f : 0.06	c : 0.06	= : 0.04	# : 0.01	b : 0.01	i : 0.01	a : 0.01	
c : 0.14	e : 0.13	" : 0.13	d : 0.13	[ : 0.09	g : 0.08	! : 0.08	f : 0.04	# : 0.03	= : 0.03	a : 0.03	b : 0.01	$ : 0.01	i : 0.01	
c : 0.21	d : 0.16	e : 0.09	g : 0.09	" : 0.09	b : 0.06	# : 0.06	[ : 0.04	f : 0.03	= : 0.03	i : 0.03	a : 0.01	$ : 0.01	! : 0.01	
c : 0.32	d : 0.13	g : 0.09	b : 0.08	# : 0.08	! : 0.06	e : 0.04	f : 0.03	= : 0.03	" : 0.03	a : 0.01	[ : 0.01	$ : 0.01	i : 0.01	
c : 0.24	[ : 0.19	d : 0.11	g : 0.08	! : 0.08	# : 0.08	" : 0.06	e : 0.03	b : 0.03	= : 0.03	$ : 0.01	i : 0.01	
c : 0.27	d : 0.13	" : 0.11	g : 0.06	b : 0.06	# : 0.06	[ : 0.04	a : 0.04	f : 0.04	! : 0.03	= : 0.03	r : 0.01	$ : 0.01	e : 0.01	i : 0.01	
c : 0.27	" : 0.13	! : 0.13	[ : 0.09	b : 0.08	d : 0.08	g : 0.06	f : 0.04	# : 0.01	r : 0.01	e : 0.01	i : 0.01	= : 0.01	
c : 0.34	d : 0.14	! : 0.11	[ : 0.09	" : 0.08	f : 0.04	b : 0.03	g : 0.03	a : 0.03	r : 0.01	e : 0.01	i : 0.01	= : 0.01	
c : 0.40	d : 0.18	b : 0.09	[ : 0.08	o : 0.04	f : 0.04	g : 0.03	a : 0.01	" : 0.01	! : 0.01	r : 0.01	i : 0.01	= : 0.01	
c : 0.31	b : 0.16	d : 0.14	n : 0.13	o : 0.06	f : 0.04	a : 0.01	[ : 0.01	l : 0.01	! : 0.01	r : 0.01	g : 0.01	i : 0.01	= : 0.01	
c : 0.22	n : 0.18	d : 0.14	m : 0.13	o : 0.06	b : 0.06	f : 0.04	l : 0.04	a : 0.03	r : 0.01	i : 0.01	= : 0.01	
l : 0.45	m : 0.21	n : 0.18	o : 0.06	d : 0.04	r : 0.01	c : 0.01	
l : 0.49	m : 0.22	n : 0.18	o : 0.06	c : 0.01	r : 0.01	
l : 0.45	m : 0.22	n : 0.18	o : 0.06	a : 0.01	b : 0.01	c : 0.01	r : 0.01	
c : 0.44	d : 0.11	b : 0.11	m : 0.09	f : 0.04	l : 0.04	n : 0.04	o : 0.01	] : 0.01	g : 0.01	i : 0.01	= : 0.01	
c : 0.47	d : 0.18	b : 0.16	f : 0.04	a : 0.03	g : 0.03	] : 0.01	i : 0.01	m : 0.01	= : 0.01	
c : 0.50	d : 0.18	b : 0.08	f : 0.04	] : 0.03	g : 0.03	4 : 0.03	3 : 0.03	2 : 0.01	i : 0.01	= : 0.01	
2 : 0.19	d : 0.18	3 : 0.14	] : 0.13	c : 0.09	4 : 0.06	f : 0.04	a : 0.03	g : 0.03	b : 0.01	8 : 0.01	i : 0.01	= : 0.01	
2 : 0.21	3 : 0.16	] : 0.11	d : 0.11	c : 0.08	f : 0.06	b : 0.06	4 : 0.06	g : 0.03	e : 0.01	a : 0.01	8 : 0.01	i : 0.01	= : 0.01	
c : 0.29	3 : 0.13	b : 0.11	d : 0.08	e : 0.06	f : 0.06	4 : 0.06	2 : 0.03	a : 0.03	g : 0.03	= : 0.03	] : 0.01	8 : 0.01	i : 0.01	
c : 0.32	d : 0.14	g : 0.09	e : 0.06	] : 0.06	b : 0.06	3 : 0.06	4 : 0.04	= : 0.03	f : 0.01	2 : 0.01	a : 0.01	8 : 0.01	i : 0.01	
c : 0.31	d : 0.18	e : 0.08	g : 0.08	3 : 0.06	= : 0.04	4 : 0.04	f : 0.03	2 : 0.03	] : 0.03	a : 0.03	b : 0.01	8 : 0.01	i : 0.01	
] : 0.21	d : 0.14	e : 0.09	3 : 0.09	g : 0.08	4 : 0.06	c : 0.06	f : 0.04	= : 0.04	2 : 0.04	a : 0.03	b : 0.01	8 : 0.01	i : 0.01	
d : 0.16	e : 0.14	2 : 0.11	c : 0.09	g : 0.09	4 : 0.08	f : 0.06	3 : 0.06	= : 0.04	i : 0.03	b : 0.03	a : 0.01	8 : 0.01	] : 0.01	
d : 0.14	g : 0.11	e : 0.11	] : 0.09	2 : 0.09	c : 0.08	4 : 0.08	i : 0.06	f : 0.04	3 : 0.04	= : 0.04	b : 0.01	8 : 0.01	a : 0.01	
c : 0.18	d : 0.14	g : 0.13	e : 0.13	f : 0.08	i : 0.08	4 : 0.04	] : 0.04	= : 0.04	2 : 0.03	b : 0.03	3 : 0.01	a : 0.01	
c : 0.18	g : 0.14	d : 0.14	e : 0.13	f : 0.09	i : 0.08	b : 0.06	] : 0.04	= : 0.04	4 : 0.03	2 : 0.01	
c : 0.21	e : 0.13	d : 0.11	f : 0.09	] : 0.08	g : 0.08	i : 0.08	a : 0.06	= : 0.04	b : 0.03	3 : 0.03	4 : 0.01	
c : 0.18	2 : 0.11	e : 0.11	f : 0.09	d : 0.08	] : 0.08	3 : 0.08	g : 0.08	i : 0.08	b : 0.03	= : 0.03	a : 0.01	
e : 0.13	] : 0.13	c : 0.13	2 : 0.11	f : 0.08	3 : 0.08	i : 0.08	d : 0.06	g : 0.06	b : 0.04	= : 0.03	a : 0.01	4 : 0.01	
c : 0.18	e : 0.14	d : 0.11	f : 0.08	i : 0.08	] : 0.08	g : 0.08	b : 0.04	a : 0.04	3 : 0.04	= : 0.03	: : 0.01	h : 0.01	4 : 0.01	

#score	741.6500408499624
#seq	61
#width	37
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF648LCX_EIF4G2_transcript_m3_run1.txt

#BEAR
cc[ccc[ddddqqqqqqqqddddccc]c	chr2:3224340-3224582(-)$1	242	111	139	16.3228
gg[dddd[cccqqqqqqqqccc]dddd]	chr1:1043323-1043630(-)$1	307	177	205	16.2427
eeee[a!!cccqqqqqqqqccc22a]ee	chr16:31504360-31504615(-)$1	255	70	98	16.9816
dd[ffffff[aqqqqqqqqa]ffffff]	chr4:187327221-187327489(-)$1	268	174	202	16.2395
[bb[ffffffaqqqqqqqqa]ffffffb	chr16:81577748-81577995(+)$1	247	79	107	15.6258
eeee[ffffffqqqqqqqqffffff]ee	chr5:1222797-1223085(+)$1	288	153	181	15.7894
ccc!!ffffffqqqqqqqqffffff22c	chr4:79722374-79722666(+)$1	292	246	274	15.6575
a[a[gggggggqqqqqqqqggggggga]	chr7:1978478-1978739(-)$1	261	179	207	17.4120
===========qqqqqqqq=========	chr1:987677-987908(+)$1	231	90	118	17.4285
eeeegggggggqqqqqqqqgggggggJJ	chr3:14444388-14444616(+)$1	228	82	110	14.2899
$$$ffffff[aqqqqqqqqa]ffffff2	chr11:64534010-64534279(-)$1	269	20	48	15.4624
ff[eeeee[bbqqqqqqqqbb]eeeeef	chr22:48207793-48208055(+)$1	262	102	130	14.9132
ggggg####bbqqqqqqqqbb333gggg	chr2:37072968-37073226(-)$1	258	12	40	16.4532
ddddddddcccqqqqqqqqccc]dddd:	chr19:49607663-49607974(+)$1	311	10	38	14.7042
eeee[ccc[bbqqqqqqqqbb22ccc]e	chr3:128203794-128204073(-)$1	279	137	165	16.0202
[==========qqqqqqqq=========	chr19:2336912-2337184(+)$1	272	41	69	17.4890
ddd"""ccc[aqqqqqqqqa]cccdddd	chr5:118604626-118604923(+)$1	297	173	201	16.1356
g!!bb[eeeeeqqqqqqqqeeeee]bb3	chr1:47696557-47696802(-)$1	245	35	63	15.5854
!!accc!!cccqqqqqqqqccc22ccc]	chr16:1786834-1787066(+)$1	232	66	94	17.6802
dbb[gggggggqqqqqqqqggggggg]b	chr3:128215920-128216203(+)$1	283	118	146	16.4497
!!ccc[a[cccqqqqqqqqccc]accc4	chr7:158702969-158703236(+)$1	267	73	101	17.7612
ee[bb[bb!!aqqqqqqqqa22bb]bb]	chr3:48970608-48970865(+)$1	257	174	202	15.0458
hhhh[a!!cccqqqqqqqqccc]a]hhh	chr12:76462372-76462630(-)$1	258	156	184	16.4962
eee[ccc[cccqqqqqqqqccc]ccc33	chr19:1171894-1172164(-)$1	270	216	244	17.5198
obb:gggggggqqqqqqqqgggggggFF	chr20:35485945-35486185(-)$1	240	147	175	14.7540
ggggg[ccc[aqqqqqqqqa]ccc]ggg	chr1:47689998-47690245(-)$1	247	215	243	17.3083
!ccc[ffffffqqqqqqqqffffffccc	chr8:130984776-130985117(-)$1	341	49	77	16.2745
ee!!gggggggqqqqqqqqgggggggee	chr21:45171717-45172013(+)$1	296	49	77	17.2022
iiiccc:ddddqqqqqqqqddddccc[d	chr19:42398110-42398397(+)$1	287	203	231	14.7290
ccca[ccccccqqqqqqqqccc]ccc]a	chr16:85648548-85648798(+)$1	250	200	228	17.4513
###ffffffbbqqqqqqqqbb]ffffff	chr10:73061921-73062162(+)$1	241	19	47	15.4083
dd::gggggggqqqqqqqqggggggg:e	chr19:10530272-10530545(-)$1	273	164	192	14.4987
a[ccc[ddddaqqqqqqqqa]dddd]cc	chr8:1774464-1774822(+)$1	358	138	166	16.1330
dd::gggggggqqqqqqqqggggggg:F	chr22:48204358-48204604(+)$1	246	72	100	14.1342
cc!!gggggggqqqqqqqqgggggggcc	chr21:45736808-45737071(+)$1	263	46	74	17.3530
ccdddd[bb[aqqqqqqqqabbdddd]c	chr13:26828210-26828528(+)$1	318	205	233	14.7848
ggggggg!!bbqqqqqqqqbb22ggggg	chr19:41882873-41883118(+)$1	245	204	232	16.3765
dddddddd[bbqqqqqqqqbbddddbbm	chr16:89497626-89497887(-)$1	261	185	213	13.8760
ccc!!ccccccqqqqqqqqccc22cccc	chr7:1892843-1893107(-)$1	264	4	32	17.2708
==::gggggggqqqqqqqqggggggg:d	chr19:1310169-1310445(+)$1	276	119	147	14.6186
dddccc[ddddqqqqqqqqddddccc::	chr14:73714515-73714795(+)$1	280	244	272	14.3698
:ffffff[cccqqqqqqqqccc]fffff	chr7:6741283-6741522(-)$1	239	195	223	15.5745
cc[hhhhhhhhqqqqqqqqhhhhhhhh]	chr7:73910745-73911121(+)$1	376	60	88	14.5700
[eeeee!!cccqqqqqqqqccc22eeee	chr1:44446509-44446730(+)$1	221	132	160	16.4925
hhhbbffffffqqqqqqqqffffff]bb	chr19:16964383-16964633(+)$1	250	99	127	14.7172
b!!bb[eeeeeqqqqqqqqeeeee]bbb	chr9:45727423-45727672(+)$1	249	26	54	14.9058
ffffff[ddddqqqqqqqqdddd]ffff	chr17:47102546-47102867(+)$1	321	15	43	15.2917
eeee[bb[cccqqqqqqqqccc]bb]ee	chr2:240190652-240190917(-)$1	265	56	84	16.1309
eeee!!bb[bbqqqqqqqqbbbb]eeee	chr15:23313875-23314147(-)$1	272	197	225	14.9312
!!acccbb[bbqqqqqqqqbb]bb]ccc	chr1:46060725-46061016(+)$1	291	58	86	15.5365
eeeee!!ddddqqqqqqqqdddd22eee	chr9:131013679-131013917(+)$1	238	57	85	15.4635
e$$$$$ccc[aqqqqqqqqa]ccc333e	chr19:47732044-47732302(-)$1	258	144	172	16.0686
[ccc!!eeeeeqqqqqqqqeeeee4444	chr6:169975187-169975475(-)$1	288	172	200	15.8600
ccc[bbeeeeeqqqqqqqqeeeee]bb2	chr22:20988996-20989272(-)$1	276	142	170	14.9503
Eccc[bbddddqqqqqqqqdddd22bb]	chr16:85647688-85647958(+)$1	270	193	221	14.4087
eeeccc!!cccqqqqqqqqccc]ccc]e	chr1:1155738-1155988(-)$1	250	34	62	17.4560
gggggg[ddddqqqqqqqqdddd]gggg	chr21:45212357-45212639(+)$1	282	227	255	16.3759
##bb"""ddddqqqqqqqqdddd22bb3	chr14:105626203-105626456(-)$1	253	23	51	15.4051
e[bb####cccqqqqqqqqccc333bb]	chr3:178496116-178496422(-)$1	306	170	198	17.0062

#otherMatches

#Seq PSSM
AUUGUGUGCUUGUGUUCCUGAGUCACUG	chr2:3224340-3224582(-)$1	242	111	139	16.3228
UGGUGGCUGUGGUGAAUGGUGCUGCUAA	chr1:1043323-1043630(-)$1	307	177	205	16.2427
UACAGGAAGAAAGGAUGGAUUUGGUGUG	chr16:31504360-31504615(-)$1	255	70	98	16.9816
gugcaugugggugugaguguguaugugg	chr4:187327221-187327489(-)$1	268	174	202	16.2395
GCACGCAUCCCUUUUCAAUGUGGGUGCU	chr16:81577748-81577995(+)$1	247	79	107	15.6258
UGGGGACGUGCUGUGCCCUGCACGUGCC	chr5:1222797-1223085(+)$1	288	153	181	15.7894
CUCUUAACAGUCGCUAUGUAUUGUUUUG	chr4:79722374-79722666(+)$1	292	246	274	15.6575
gugugugugugugugugugugCGCGCCU	chr7:1978478-1978739(-)$1	261	179	207	17.4120
uccauguauauguguguguguauaugug	chr1:987677-987908(+)$1	231	90	118	17.4285
GCGCCCCUUUCACCACCGCGGAAGGGAC	chr3:14444388-14444616(+)$1	228	82	110	14.2899
GCUGGGGUUGUAAACAGAAAGGGCCUCC	chr11:64534010-64534279(-)$1	269	20	48	15.4624
guguccuugaagacagagauuggaggga	chr22:48207793-48208055(+)$1	262	102	130	14.9132
AGGCAAUAGCUAGAAAAUGAGAGGUGCC	chr2:37072968-37073226(-)$1	258	12	40	16.4532
UUGGGGCGCUGAGAGGAAGCAGACGCUG	chr19:49607663-49607974(+)$1	311	10	38	14.7042
CCCCCGCCCCUUUUCCCGCAGCUGGCUG	chr3:128203794-128204073(-)$1	279	137	165	16.0202
uggacgugugcuugugugugcgcguguu	chr19:2336912-2337184(+)$1	272	41	69	17.4890
GAAACUCCGCGAAAUUUUACUCGGUUCC	chr5:118604626-118604923(+)$1	297	173	201	16.1356
GUAGCUGCGGGCUUCGGUUCCCGCUGCA	chr1:47696557-47696802(-)$1	245	35	63	15.5854
gaccgucugugugagugaccauccaugu	chr16:1786834-1787066(+)$1	232	66	94	17.6802
UCUGCCCUGGAGGUGGCUGUUUAGGGGA	chr3:128215920-128216203(+)$1	283	118	146	16.4497
GUGUCAGGCCUGUGGGCUGAGGGCGAUU	chr7:158702969-158703236(+)$1	267	73	101	17.7612
acgggguuuugccauguuacccaggcug	chr3:48970608-48970865(+)$1	257	174	202	15.0458
CAUUGUUUGCAUCCUGCACUGUUGGAGU	chr12:76462372-76462630(-)$1	258	156	184	16.4962
CCGUUCAUCCAUUCACUCUUGGUUGGCU	chr19:1171894-1172164(-)$1	270	216	244	17.5198
ACCACAGUCAGCAAAGCUCUUGGCUGCU	chr20:35485945-35486185(-)$1	240	147	175	14.7540
UAUGUGCCUGUGUUUGUGUGGAGGGAUG	chr1:47689998-47690245(-)$1	247	215	243	17.3083
GAGCCACACUCUAUGCCCUGGGUGUGCU	chr8:130984776-130985117(-)$1	341	49	77	16.2745
CUUUGGGCUGCGUUCCCAAGCAGCCUGG	chr21:45171717-45172013(+)$1	296	49	77	17.2022
CGCCACCUUGGGGUGCGGACCAAGAGUG	chr19:42398110-42398397(+)$1	287	203	231	14.7290
CGGCCGCCUCCACCAGCAGGGACGGCAG	chr16:85648548-85648798(+)$1	250	200	228	17.4513
AUGUACCUGGUGGGAAGCAGCUCAGGUA	chr10:73061921-73062162(+)$1	241	19	47	15.4083
CGUCUAUGUAUGUUAgugugugcgugug	chr19:10530272-10530545(-)$1	273	164	192	14.4987
ugugugugcgcgugugugAGUUGUAGAU	chr8:1774464-1774822(+)$1	358	138	166	16.1330
GGACAGGGGUCACUGGAAAGGCCCCUCC	chr22:48204358-48204604(+)$1	246	72	100	14.1342
CUGGGUGGGCAGAGGGUGGUGCCCAUGG	chr21:45736808-45737071(+)$1	263	46	74	17.3530
CGCCGCAGCAGGAGCAGAACGCGCGGCC	chr13:26828210-26828528(+)$1	318	205	233	14.7848
GUGCCUGGGCCUGAUGAGUGGGGCAGGC	chr19:41882873-41883118(+)$1	245	204	232	16.3765
GGGAUUUGUCGGUGAACAACGCAGAGCU	chr16:89497626-89497887(-)$1	261	185	213	13.8760
UCACUGCCGUCUGAUGCCUGACCGGGCU	chr7:1892843-1893107(-)$1	264	4	32	17.2708
AACGGCCUCUCGCAGGUGAGGGGGGCAG	chr19:1310169-1310445(+)$1	276	119	147	14.6186
gcccagugggagucucauauccucugug	chr14:73714515-73714795(+)$1	280	244	272	14.3698
ccuauuugcuucuuuucucagggaaaua	chr7:6741283-6741522(-)$1	239	195	223	15.5745
ugugcacguauguguguguguguguguu	chr7:73910745-73911121(+)$1	376	60	88	14.5700
GUCUGUGAGUGUGAAAGGGUAUGAGCAG	chr1:44446509-44446730(+)$1	221	132	160	16.4925
AUGGGCUGUGUGAAUUGCUGCACGGAUC	chr19:16964383-16964633(+)$1	250	99	127	14.7172
ccuggugguguguguuucaaugccucug	chr9:45727423-45727672(+)$1	249	26	54	14.9058
aaauaaaacauaaaaaaUAAugucuuau	chr17:47102546-47102867(+)$1	321	15	43	15.2917
uuguguagauguaugaauguauguagau	chr2:240190652-240190917(-)$1	265	56	84	16.1309
CCAGGCGGAGCAGAGGUGGGCCCACUGG	chr15:23313875-23314147(-)$1	272	197	225	14.9312
gccugccagacuaaguuuugugugugug	chr1:46060725-46061016(+)$1	291	58	86	15.5365
CACAGGAGCAGAGGCCAGGCUGUGACUG	chr9:131013679-131013917(+)$1	238	57	85	15.4635
CGUGUGAGUCCUUGUGUGUGUGCUGUGG	chr19:47732044-47732302(-)$1	258	144	172	16.0686
ggauggauggaugaaauuuuuuauguga	chr6:169975187-169975475(-)$1	288	172	200	15.8600
Gucaggcagcagcucaccauguugaccc	chr22:20988996-20989272(-)$1	276	142	170	14.9503
GUGGAGCCGAUUCAAUUAUAUUGCAGCA	chr16:85647688-85647958(+)$1	270	193	221	14.4087
CUUGGCCUCCCCGACCUCAGGGUGCCUA	chr1:1155738-1155988(-)$1	250	34	62	17.4560
UCAUGCUUUUCAGACCACGGAGGCGCGU	chr21:45212357-45212639(+)$1	282	227	255	16.3759
GGAUGGAGCAUGUUGGGGGGUGUGGAUG	chr14:105626203-105626456(-)$1	253	23	51	15.4051
uguguguguCUUAAAGGGUAGAAAUCAG	chr3:178496116-178496422(-)$1	306	170	198	17.0062

#DB
((.(((.((((........))))))).)	chr2:3224340-3224582(-)$1	1	111	139	16.3228
((.((((.(((........))).)))).	chr1:1043323-1043630(-)$1	1	177	205	16.2427
((((.(..(((........)))..).))	chr16:31504360-31504615(-)$1	1	70	98	16.9816
((.((((((.(........).)))))).	chr4:187327221-187327489(-)$1	1	174	202	16.2395
.((.(((((((........).)))))))	chr16:81577748-81577995(+)$1	1	79	107	15.6258
((((.((((((........)))))).))	chr5:1222797-1223085(+)$1	1	153	181	15.7894
(((..((((((........))))))..)	chr4:79722374-79722666(+)$1	1	246	274	15.6575
(.(.(((((((........)))))))).	chr7:1978478-1978739(-)$1	1	179	207	17.4120
(((((((((((........)))))))))	chr1:987677-987908(+)$1	1	90	118	17.4285
))))(((((((........)))))))((	chr3:14444388-14444616(+)$1	1	82	110	14.2899
...((((((.(........).)))))).	chr11:64534010-64534279(-)$1	1	20	48	15.4624
((.(((((.((........)).))))))	chr22:48207793-48208055(+)$1	1	102	130	14.9132
(((((....((........))...))))	chr2:37072968-37073226(-)$1	1	12	40	16.4532
))))(((((((........))).)))).	chr19:49607663-49607974(+)$1	1	10	38	14.7042
((((.(((.((........))..))).)	chr3:128203794-128204073(-)$1	1	137	165	16.0202
.((((((((((........)))))))))	chr19:2336912-2337184(+)$1	1	41	69	17.4890
(((...(((.(........).)))))))	chr5:118604626-118604923(+)$1	1	173	201	16.1356
(..((.(((((........))))).)).	chr1:47696557-47696802(-)$1	1	35	63	15.5854
..((((..(((........)))..))).	chr16:1786834-1787066(+)$1	1	66	94	17.6802
(((.(((((((........))))))).)	chr3:128215920-128216203(+)$1	1	118	146	16.4497
..(((.(.(((........))).)))).	chr7:158702969-158703236(+)$1	1	73	101	17.7612
((.((.((..(........)..)).)).	chr3:48970608-48970865(+)$1	1	174	202	15.0458
((((.(..(((........))).).)))	chr12:76462372-76462630(-)$1	1	156	184	16.4962
(((.(((.(((........))).)))..	chr19:1171894-1172164(-)$1	1	216	244	17.5198
.)).(((((((........)))))))))	chr20:35485945-35486185(-)$1	1	147	175	14.7540
(((((.(((.(........).))).)))	chr1:47689998-47690245(-)$1	1	215	243	17.3083
.(((.((((((........)))))))))	chr8:130984776-130985117(-)$1	1	49	77	16.2745
((..(((((((........)))))))))	chr21:45171717-45172013(+)$1	1	49	77	17.2022
)))))).((((........))))(((.(	chr19:42398110-42398397(+)$1	1	203	231	14.7290
((((.((((((........))).))).)	chr16:85648548-85648798(+)$1	1	200	228	17.4513
...((((((((........)).))))))	chr10:73061921-73062162(+)$1	1	19	47	15.4083
))..(((((((........))))))).(	chr19:10530272-10530545(-)$1	1	164	192	14.4987
(.(((.(((((........).)))).))	chr8:1774464-1774822(+)$1	1	138	166	16.1330
))..(((((((........))))))).)	chr22:48204358-48204604(+)$1	1	72	100	14.1342
((..(((((((........)))))))))	chr21:45736808-45737071(+)$1	1	46	74	17.3530
((((((.((.(........))))))).)	chr13:26828210-26828528(+)$1	1	205	233	14.7848
(((((((..((........))..)))))	chr19:41882873-41883118(+)$1	1	204	232	16.3765
))))((((.((........))))))((.	chr16:89497626-89497887(-)$1	1	185	213	13.8760
(((..((((((........)))..))))	chr7:1892843-1893107(-)$1	1	4	32	17.2708
))..(((((((........))))))).(	chr19:1310169-1310445(+)$1	1	119	147	14.6186
)))(((.((((........)))))))..	chr14:73714515-73714795(+)$1	1	244	272	14.3698
.((((((.(((........))).)))))	chr7:6741283-6741522(-)$1	1	195	223	15.5745
((.((((((((........)))))))).	chr7:73910745-73911121(+)$1	1	60	88	14.5700
.(((((..(((........)))..))))	chr1:44446509-44446730(+)$1	1	132	160	16.4925
(((((((((((........)))))).))	chr19:16964383-16964633(+)$1	1	99	127	14.7172
(..((.(((((........))))).)))	chr9:45727423-45727672(+)$1	1	26	54	14.9058
((((((.((((........)))).))))	chr17:47102546-47102867(+)$1	1	15	43	15.2917
((((.((.(((........))).)).))	chr2:240190652-240190917(-)$1	1	56	84	16.1309
((((..((.((........)))).))))	chr15:23313875-23314147(-)$1	1	197	225	14.9312
..((((((.((........)).)).)))	chr1:46060725-46061016(+)$1	1	58	86	15.5365
(((((..((((........))))..)))	chr9:131013679-131013917(+)$1	1	57	85	15.4635
(.....(((.(........).)))...)	chr19:47732044-47732302(-)$1	1	144	172	16.0686
.(((..(((((........)))))....	chr6:169975187-169975475(-)$1	1	172	200	15.8600
(((.(((((((........))))).)).	chr22:20988996-20989272(-)$1	1	142	170	14.9503
((((.((((((........))))..)).	chr16:85647688-85647958(+)$1	1	193	221	14.4087
((((((..(((........))).))).)	chr1:1155738-1155988(-)$1	1	34	62	17.4560
((((((.((((........)))).))))	chr21:45212357-45212639(+)$1	1	227	255	16.3759
..((...((((........))))..)).	chr14:105626203-105626456(-)$1	1	23	51	15.4051
(.((....(((........)))...)).	chr3:178496116-178496422(-)$1	1	170	198	17.0062

#PSSM
e : 0.22	c : 0.13	d : 0.13	g : 0.10	[ : 0.06	! : 0.06	a : 0.03	= : 0.03	f : 0.03	h : 0.03	# : 0.03	$ : 0.01	o : 0.01	i : 0.01	: : 0.01	b : 0.01	E : 0.01	
e : 0.20	c : 0.18	d : 0.11	g : 0.08	! : 0.08	b : 0.05	[ : 0.05	= : 0.05	f : 0.05	$ : 0.03	h : 0.03	# : 0.03	i : 0.01	
e : 0.16	c : 0.15	[ : 0.10	b : 0.08	d : 0.08	g : 0.06	! : 0.06	a : 0.05	: : 0.05	= : 0.03	$ : 0.03	h : 0.03	f : 0.03	i : 0.01	# : 0.01	
c : 0.18	e : 0.15	b : 0.10	f : 0.08	[ : 0.08	d : 0.06	! : 0.06	g : 0.06	: : 0.06	= : 0.03	h : 0.03	" : 0.01	a : 0.01	$ : 0.01	
g : 0.22	c : 0.15	[ : 0.13	f : 0.10	b : 0.08	d : 0.06	! : 0.06	e : 0.05	= : 0.03	" : 0.03	h : 0.01	$ : 0.01	# : 0.01	
g : 0.18	c : 0.16	f : 0.16	[ : 0.10	d : 0.06	b : 0.05	! : 0.05	a : 0.03	= : 0.03	e : 0.03	# : 0.03	" : 0.03	h : 0.01	$ : 0.01	
g : 0.16	f : 0.15	c : 0.11	! : 0.10	[ : 0.08	e : 0.08	b : 0.08	d : 0.06	= : 0.03	# : 0.03	a : 0.01	: : 0.01	h : 0.01	" : 0.01	
d : 0.18	g : 0.15	f : 0.13	! : 0.10	c : 0.10	[ : 0.08	e : 0.08	b : 0.06	= : 0.03	# : 0.03	h : 0.01	
c : 0.28	d : 0.15	g : 0.15	f : 0.13	[ : 0.08	e : 0.06	= : 0.03	! : 0.03	# : 0.01	b : 0.01	h : 0.01	
c : 0.23	d : 0.15	g : 0.15	b : 0.13	[ : 0.10	f : 0.08	e : 0.06	= : 0.03	! : 0.01	h : 0.01	
c : 0.23	a : 0.15	g : 0.15	d : 0.13	b : 0.13	f : 0.06	e : 0.06	= : 0.03	h : 0.01	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
q : 0.99	
c : 0.23	a : 0.15	g : 0.15	d : 0.13	b : 0.13	f : 0.06	e : 0.06	= : 0.03	h : 0.01	
c : 0.23	g : 0.15	b : 0.15	d : 0.13	] : 0.11	f : 0.06	e : 0.06	= : 0.03	2 : 0.01	h : 0.01	
c : 0.28	d : 0.16	g : 0.15	f : 0.11	e : 0.06	] : 0.05	2 : 0.05	= : 0.03	b : 0.03	3 : 0.01	h : 0.01	
d : 0.18	] : 0.15	g : 0.15	f : 0.13	2 : 0.10	e : 0.08	c : 0.05	b : 0.05	= : 0.03	3 : 0.03	h : 0.01	
c : 0.16	g : 0.16	f : 0.15	2 : 0.11	d : 0.08	e : 0.08	b : 0.05	] : 0.05	= : 0.03	3 : 0.03	a : 0.03	h : 0.01	
g : 0.20	c : 0.16	f : 0.16	] : 0.11	d : 0.10	e : 0.05	2 : 0.05	= : 0.03	3 : 0.03	a : 0.01	h : 0.01	b : 0.01	4 : 0.01	
g : 0.22	c : 0.20	b : 0.13	f : 0.10	] : 0.08	d : 0.06	e : 0.06	= : 0.03	h : 0.03	2 : 0.01	3 : 0.01	4 : 0.01	
b : 0.15	e : 0.13	c : 0.11	] : 0.10	f : 0.10	g : 0.06	: : 0.06	d : 0.05	= : 0.03	h : 0.03	3 : 0.03	2 : 0.01	a : 0.01	J : 0.01	F : 0.01	[ : 0.01	4 : 0.01	
e : 0.18	c : 0.13	] : 0.13	b : 0.06	f : 0.06	g : 0.06	d : 0.05	3 : 0.05	= : 0.03	2 : 0.03	: : 0.03	4 : 0.03	F : 0.03	J : 0.01	h : 0.01	a : 0.01	m : 0.01	

#score	937.3961883878125
#seq	59
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF955VYD_NIP7_transcript_m1_run1.txt

#BEAR
eeeooooooeeee	chr1:173835921-173836144(-)$1	223	7	20	10.5489
cccooooooccc3	chr11:62622060-62622267(-)$1	207	108	121	9.8796
dddoooooodddd	chr5:40832671-40832936(-)$1	265	19	32	11.6182
dddoooooodddd	chr20:17943377-17943610(-)$1	233	202	215	11.6182
dddoooooodddd	chr2:234197429-234197684(+)$1	255	39	52	11.6182
[bboooooobb]e	chr3:186336224-186336432(+)$1	208	78	91	8.8812
[bboooooobb]e	chr3:186336248-186336468(+)$1	220	54	67	8.8812
dddoooooodddd	chr1:8926451-8926661(-)$1	210	122	135	11.6182
eeeooooooeeee	chr6:31804756-31804977(+)$1	221	23	36	10.5489
===oooooo====	chr10:101996729-101997001(-)$1	272	126	139	9.6264
dddoooooodddd	chr5:137896660-137896868(-)$1	208	132	145	11.6182
dddoooooodddd	chr14:21865417-21865654(-)$1	237	180	193	11.6182
cccooooooccc3	chr11:75115364-75115621(+)$1	257	19	32	9.8796
dddoooooodddd	chr17:16343248-16343490(+)$1	242	203	216	11.6182
dddoooooodddd	chr7:98479218-98479475(+)$1	257	23	36	11.6182
eeeooooooeeee	chr3:96336128-96336392(-)$1	264	182	195	10.5489
dddoooooodddd	chr17:1675097-1675358(+)$1	261	6	19	11.6182
cccoooooocccd	chr1:173833479-173833683(-)$1	204	84	97	10.2735
eeeooooooeeee	chr9:136216150-136216392(+)$1	242	13	26	10.5489
dddoooooodddd	chr2:216274698-216274936(-)$1	238	58	71	11.6182
dddoooooodddd	chr2:216236535-216236781(-)$1	246	76	89	11.6182
dddoooooodddd	chr12:57598344-57598575(+)$1	231	135	148	11.6182
dddoooooodddd	chr20:17943329-17943533(-)$1	204	125	138	11.6182
dddoooooodddd	chr20:17943325-17943529(-)$1	204	121	134	11.6182
cccoooooocccc	chr2:216286789-216287023(-)$1	234	197	210	9.9462
iiiooooooiiii	chr11:93454846-93455133(+)$1	287	11	24	9.4639
dddoooooodddd	chr5:137896668-137896887(-)$1	219	151	164	11.6182
eeeooooooeeee	chr17:7480027-7480293(+)$1	266	139	152	10.5489
dddoooooodddd	chr2:203155957-203156200(+)$1	243	10	23	11.6182
dddoooooodddd	chr17:79803646-79803859(-)$1	213	79	92	11.6182
dddoooooodddd	chr11:68201145-68201387(+)$1	242	187	200	11.6182
eeeooooooeeee	chr2:203141060-203141333(+)$1	273	225	238	10.5489
cccooooooccc]	chr9:124065095-124065404(+)$1	309	174	187	9.9073
dddoooooodddd	chr5:137896695-137896900(-)$1	205	164	177	11.6182
dddoooooodddd	chr11:10823012-10823255(-)$1	243	51	64	11.6182
cccooooooccc]	chr1:76252687-76252932(+)$1	245	16	29	9.9073
eeeooooooeeee	chr14:21860306-21860513(-)$1	207	153	166	10.5489
eeeooooooeeee	chr15:25332746-25332976(+)$1	230	137	150	10.5489
dddoooooodddd	chr6:133136346-133136556(+)$1	210	6	19	11.6182
dddoooooodddd	chr19:49994063-49994323(+)$1	260	1	14	11.6182
eeeooooooeeee	chr4:83819210-83819476(-)$1	266	84	97	10.5489
[bboooooobb]e	chr3:186336232-186336448(+)$1	216	70	83	8.8812
dddoooooodddd	chr2:216259216-216259450(-)$1	234	5	18	11.6182
dddoooooodddd	chr8:11704493-11704767(-)$1	274	89	102	11.6182
dddoooooodddd	chr19:24187167-24187408(-)$1	241	225	238	11.6182
[bboooooobbdd	chr1:173835944-173836177(-)$1	233	15	28	9.3779
eeeooooooeeee	chr1:45242114-45242351(+)$1	237	189	202	10.5489
d[aooooooa]dd	chr12:98993309-98993561(+)$1	252	85	98	10.1819
dddoooooodddd	chr20:2637487-2637751(+)$1	264	75	88	11.6182
eeeooooooeeee	chrM:12133-12345(+)$1	212	110	123	10.5489
dddoooooodddd	chr3:160232619-160232911(-)$1	292	244	257	11.6182
dddoooooodddd	chr11:93454578-93454891(+)$1	313	96	109	11.6182
eeeooooooeeee	chr15:66795085-66795302(-)$1	217	186	199	10.5489
cccoooooocccF	chr1:173835024-173835260(-)$1	236	187	200	9.4682
eeeooooooeeee	chr17:16344436-16344640(+)$1	204	61	74	10.5489
eeeooooooeeee	chr20:47897166-47897386(+)$1	220	63	76	10.5489
cccooooooccc]	chr1:76252659-76252887(+)$1	228	44	57	9.9073
cccooooooccc3	chr16:71792240-71792486(-)$1	246	138	151	9.8796
[bboooooobb]d	chr3:186336268-186336485(+)$1	217	34	47	9.0111
eeeooooooeeee	chrX:132887833-132888119(-)$1	286	203	216	10.5489
dddoooooodddd	chr1:173833413-173833638(-)$1	225	197	210	11.6182
dddoooooodddd	chr14:45579988-45580269(+)$1	281	83	96	11.6182

#otherMatches

#Seq PSSM
UAUGGACAGGUAA	chr1:173835921-173836144(-)$1	223	7	20	10.5489
AUUUGAAUUGAUA	chr11:62622060-62622267(-)$1	207	108	121	9.8796
AAAUAAGUUUUUG	chr5:40832671-40832936(-)$1	265	19	32	11.6182
GGGACGGGGCCCU	chr20:17943377-17943610(-)$1	233	202	215	11.6182
UUCCUCCGUGAGC	chr2:234197429-234197684(+)$1	255	39	52	11.6182
CAUUUUCAUGUAC	chr3:186336224-186336432(+)$1	208	78	91	8.8812
CAUUUUCAUGUAC	chr3:186336248-186336468(+)$1	220	54	67	8.8812
GGUUCUCAUGCUG	chr1:8926451-8926661(-)$1	210	122	135	11.6182
GACUGUUGUGUUU	chr6:31804756-31804977(+)$1	221	23	36	10.5489
GCUGACACAGGCU	chr10:101996729-101997001(-)$1	272	126	139	9.6264
GCACAAACCUGUU	chr5:137896660-137896868(-)$1	208	132	145	11.6182
UUCUCACAUGAAG	chr14:21865417-21865654(-)$1	237	180	193	11.6182
ACGUUGAUCUGUA	chr11:75115364-75115621(+)$1	257	19	32	9.8796
AGGAGUAAACUUG	chr17:16343248-16343490(+)$1	242	203	216	11.6182
AGCUCAGAUGUUG	chr7:98479218-98479475(+)$1	257	23	36	11.6182
CCGCCUGCCCGGU	chr3:96336128-96336392(-)$1	264	182	195	10.5489
CUCAAAGACGGGA	chr17:1675097-1675358(+)$1	261	6	19	11.6182
UGAUGAUUUUCAG	chr1:173833479-173833683(-)$1	204	84	97	10.2735
GGACUGCAAUUCU	chr9:136216150-136216392(+)$1	242	13	26	10.5489
CACgugugugugu	chr2:216274698-216274936(-)$1	238	58	71	11.6182
GGGCCCCAUUCCA	chr2:216236535-216236781(-)$1	246	76	89	11.6182
CCAAUGCGAUGGC	chr12:57598344-57598575(+)$1	231	135	148	11.6182
GGGACGGGGCCCU	chr20:17943329-17943533(-)$1	204	125	138	11.6182
GGGACGGGGCCCU	chr20:17943325-17943529(-)$1	204	121	134	11.6182
UCGCAGCUUCGAG	chr2:216286789-216287023(-)$1	234	197	210	9.9462
guguguguguACG	chr11:93454846-93455133(+)$1	287	11	24	9.4639
GCACAAACCUGUU	chr5:137896668-137896887(-)$1	219	151	164	11.6182
GGCUUCCCUGCCA	chr17:7480027-7480293(+)$1	266	139	152	10.5489
GCAAUAUUCUGCA	chr2:203155957-203156200(+)$1	243	10	23	11.6182
UUUGAUGAGAAAA	chr17:79803646-79803859(-)$1	213	79	92	11.6182
CCAAGACCCUGGC	chr11:68201145-68201387(+)$1	242	187	200	11.6182
ggcgugauggcuc	chr2:203141060-203141333(+)$1	273	225	238	10.5489
UGCAGCACCGUGA	chr9:124065095-124065404(+)$1	309	174	187	9.9073
GCACAAACCUGUU	chr5:137896695-137896900(-)$1	205	164	177	11.6182
CAUUUGCCUAUGU	chr11:10823012-10823255(-)$1	243	51	64	11.6182
UUAUCUUUUUGAA	chr1:76252687-76252932(+)$1	245	16	29	9.9073
CCCUAACUUGGGU	chr14:21860306-21860513(-)$1	207	153	166	10.5489
UCGUCGAACUGAG	chr15:25332746-25332976(+)$1	230	137	150	10.5489
CCUAGGAAAAGGU	chr6:133136346-133136556(+)$1	210	6	19	11.6182
CAGGCCGCUCUGG	chr19:49994063-49994323(+)$1	260	1	14	11.6182
GCUUCUUCUAGUA	chr4:83819210-83819476(-)$1	266	84	97	10.5489
CAUUUUCAUGUAC	chr3:186336232-186336448(+)$1	216	70	83	8.8812
CAGACAUUACUGG	chr2:216259216-216259450(-)$1	234	5	18	11.6182
GGAUACAAUUCCU	chr8:11704493-11704767(-)$1	274	89	102	11.6182
AGGGCUACACCUG	chr19:24187167-24187408(-)$1	241	225	238	11.6182
UGCAGUGUGGCUC	chr1:173835944-173836177(-)$1	233	15	28	9.3779
GCUCUCCUUGGUA	chr1:45242114-45242351(+)$1	237	189	202	10.5489
AAGAAUUUCCAUG	chr12:98993309-98993561(+)$1	252	85	98	10.1819
GUGGAGUGGCAUA	chr20:2637487-2637751(+)$1	264	75	88	11.6182
UGUCUAACAACAU	chrM:12133-12345(+)$1	212	110	123	10.5489
UAAUAUUUUUUAG	chr3:160232619-160232911(-)$1	292	244	257	11.6182
CAGUGCUUUCUGA	chr11:93454578-93454891(+)$1	313	96	109	11.6182
GAAAUGUGAUUCU	chr15:66795085-66795302(-)$1	217	186	199	10.5489
CACUCAUCUGUGG	chr1:173835024-173835260(-)$1	236	187	200	9.4682
CAGCUGAUCUUGU	chr17:16344436-16344640(+)$1	204	61	74	10.5489
CUGAUGAUACAGC	chr20:47897166-47897386(+)$1	220	63	76	10.5489
UUAUCUUUUUGAA	chr1:76252659-76252887(+)$1	228	44	57	9.9073
GUGUCUUGUCACA	chr16:71792240-71792486(-)$1	246	138	151	9.8796
CAUUUUCAUGUAC	chr3:186336268-186336485(+)$1	217	34	47	9.0111
GGGAAUUUCCCCA	chrX:132887833-132888119(-)$1	286	203	216	10.5489
GUUUUUAAUGACC	chr1:173833413-173833638(-)$1	225	197	210	11.6182
GUGUAUUUUCACU	chr14:45579988-45580269(+)$1	281	83	96	11.6182

#DB
(((......))))	chr1:173835921-173836144(-)$1	1	7	20	10.5489
(((......))).	chr11:62622060-62622267(-)$1	1	108	121	9.8796
(((......))))	chr5:40832671-40832936(-)$1	1	19	32	11.6182
(((......))))	chr20:17943377-17943610(-)$1	1	202	215	11.6182
(((......))))	chr2:234197429-234197684(+)$1	1	39	52	11.6182
.((......)).)	chr3:186336224-186336432(+)$1	1	78	91	8.8812
.((......)).)	chr3:186336248-186336468(+)$1	1	54	67	8.8812
(((......))))	chr1:8926451-8926661(-)$1	1	122	135	11.6182
(((......))))	chr6:31804756-31804977(+)$1	1	23	36	10.5489
(((......))))	chr10:101996729-101997001(-)$1	1	126	139	9.6264
(((......))))	chr5:137896660-137896868(-)$1	1	132	145	11.6182
(((......))))	chr14:21865417-21865654(-)$1	1	180	193	11.6182
(((......))).	chr11:75115364-75115621(+)$1	1	19	32	9.8796
(((......))))	chr17:16343248-16343490(+)$1	1	203	216	11.6182
(((......))))	chr7:98479218-98479475(+)$1	1	23	36	11.6182
(((......))))	chr3:96336128-96336392(-)$1	1	182	195	10.5489
(((......))))	chr17:1675097-1675358(+)$1	1	6	19	11.6182
(((......))))	chr1:173833479-173833683(-)$1	1	84	97	10.2735
(((......))))	chr9:136216150-136216392(+)$1	1	13	26	10.5489
(((......))))	chr2:216274698-216274936(-)$1	1	58	71	11.6182
(((......))))	chr2:216236535-216236781(-)$1	1	76	89	11.6182
(((......))))	chr12:57598344-57598575(+)$1	1	135	148	11.6182
(((......))))	chr20:17943329-17943533(-)$1	1	125	138	11.6182
(((......))))	chr20:17943325-17943529(-)$1	1	121	134	11.6182
(((......))))	chr2:216286789-216287023(-)$1	1	197	210	9.9462
(((......))))	chr11:93454846-93455133(+)$1	1	11	24	9.4639
(((......))))	chr5:137896668-137896887(-)$1	1	151	164	11.6182
(((......))))	chr17:7480027-7480293(+)$1	1	139	152	10.5489
(((......))))	chr2:203155957-203156200(+)$1	1	10	23	11.6182
(((......))))	chr17:79803646-79803859(-)$1	1	79	92	11.6182
(((......))))	chr11:68201145-68201387(+)$1	1	187	200	11.6182
(((......))))	chr2:203141060-203141333(+)$1	1	225	238	10.5489
(((......))).	chr9:124065095-124065404(+)$1	1	174	187	9.9073
(((......))))	chr5:137896695-137896900(-)$1	1	164	177	11.6182
(((......))))	chr11:10823012-10823255(-)$1	1	51	64	11.6182
(((......))).	chr1:76252687-76252932(+)$1	1	16	29	9.9073
(((......))))	chr14:21860306-21860513(-)$1	1	153	166	10.5489
(((......))))	chr15:25332746-25332976(+)$1	1	137	150	10.5489
(((......))))	chr6:133136346-133136556(+)$1	1	6	19	11.6182
(((......))))	chr19:49994063-49994323(+)$1	1	1	14	11.6182
(((......))))	chr4:83819210-83819476(-)$1	1	84	97	10.5489
.((......)).)	chr3:186336232-186336448(+)$1	1	70	83	8.8812
(((......))))	chr2:216259216-216259450(-)$1	1	5	18	11.6182
(((......))))	chr8:11704493-11704767(-)$1	1	89	102	11.6182
(((......))))	chr19:24187167-24187408(-)$1	1	225	238	11.6182
.((......))))	chr1:173835944-173836177(-)$1	1	15	28	9.3779
(((......))))	chr1:45242114-45242351(+)$1	1	189	202	10.5489
(.(......).))	chr12:98993309-98993561(+)$1	1	85	98	10.1819
(((......))))	chr20:2637487-2637751(+)$1	1	75	88	11.6182
(((......))))	chrM:12133-12345(+)$1	1	110	123	10.5489
(((......))))	chr3:160232619-160232911(-)$1	1	244	257	11.6182
(((......))))	chr11:93454578-93454891(+)$1	1	96	109	11.6182
(((......))))	chr15:66795085-66795302(-)$1	1	186	199	10.5489
(((......))))	chr1:173835024-173835260(-)$1	1	187	200	9.4682
(((......))))	chr17:16344436-16344640(+)$1	1	61	74	10.5489
(((......))))	chr20:47897166-47897386(+)$1	1	63	76	10.5489
(((......))).	chr1:76252659-76252887(+)$1	1	44	57	9.9073
(((......))).	chr16:71792240-71792486(-)$1	1	138	151	9.8796
.((......)).)	chr3:186336268-186336485(+)$1	1	34	47	9.0111
(((......))))	chrX:132887833-132888119(-)$1	1	203	216	10.5489
(((......))))	chr1:173833413-173833638(-)$1	1	197	210	11.6182
(((......))))	chr14:45579988-45580269(+)$1	1	83	96	11.6182

#PSSM
d : 0.49	e : 0.24	c : 0.14	[ : 0.08	= : 0.01	i : 0.01	
d : 0.48	e : 0.24	c : 0.14	b : 0.08	= : 0.01	i : 0.01	[ : 0.01	
d : 0.48	e : 0.24	c : 0.14	b : 0.08	= : 0.01	i : 0.01	a : 0.01	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
o : 0.99	
d : 0.48	e : 0.24	c : 0.14	b : 0.08	= : 0.01	i : 0.01	a : 0.01	
d : 0.48	e : 0.24	c : 0.14	b : 0.08	= : 0.01	i : 0.01	] : 0.01	
d : 0.51	e : 0.24	c : 0.14	] : 0.06	= : 0.01	i : 0.01	
d : 0.54	e : 0.29	3 : 0.04	] : 0.04	= : 0.01	c : 0.01	i : 0.01	F : 0.01	

#score	670.1368759341402
#seq	62
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF153CMF_CPEB4_transcript_m3_run1.txt

#BEAR
ee####aqqqqqqqqa333eee	chr16:56643189-56643481(+)$1	292	40	62	13.7426
eeee[bbqqqqqqqqbb]eeee	chr8:23429807-23430070(+)$1	263	44	66	13.9061
dd[bb[aqqqqqqqqabb]ddd	chr4:83274927-83275217(-)$1	290	178	200	13.2276
[ffffffqqqqqqqqffffff]	chr1:25568668-25568964(-)$1	296	49	71	14.1185
hhhhhhhqqqqqqqqhhhhhhh	chr5:179046402-179046681(-)$1	279	101	123	13.2548
:ffffffqqqqqqqqffffff:	chr11:62656138-62656384(+)$1	246	201	223	12.1681
!bb[cccqqqqqqqqcccbb33	chr19:10406306-10406614(+)$1	308	229	251	13.9221
ccc[bbqqqqqqqqbb]ccc22	chr20:45838945-45839220(-)$1	275	110	132	11.4527
ddd[cccqqqqqqqqccc]ddd	chr3:33910861-33911121(+)$1	260	127	149	14.2894
gggggggqqqqqqqqggggggg	chr6:33377541-33377786(+)$1	245	72	94	15.3094
hhhhhhhqqqqqqqqhhhhhhh	chr6:16148272-16148538(+)$1	266	104	126	13.2548
hhhhhhhqqqqqqqqhhhhhhh	chr10:69832442-69832690(-)$1	248	186	208	13.2548
dd[ddddqqqqqqqqdddd22d	chr19:10578460-10578707(+)$1	247	143	165	12.7901
$$eeeeeqqqqqqqqeeeee88	chr6:17615407-17615629(-)$1	222	68	90	11.6977
hhhhhhhqqqqqqqqhhhhhhh	chr6:26545668-26545956(+)$1	288	82	104	13.2548
gggggggqqqqqqqqggggggg	chr1:202860148-202860430(-)$1	282	124	146	15.3094
cceeeeeqqqqqqqqeeeee]c	chr17:38544691-38544930(-)$1	239	29	51	13.4140
:ccccccqqqqqqqqccc]ccc	chr11:58385122-58385368(+)$1	246	42	64	13.8968
dddddddqqqqqqqqdddd]dd	chr15:30941972-30942252(+)$1	280	26	48	12.7344
:ffffffqqqqqqqqffffff:	chr1:78413984-78414248(-)$1	264	145	167	12.1681
iiiiiiiqqqqqqqqiiiiiii	chr6:17615429-17615677(-)$1	248	170	192	15.0467
"ccc[bbqqqqqqqqbb]ccc2	chr19:34882765-34883100(+)$1	335	212	234	14.2690
:ffffffqqqqqqqqffffff:	chr17:62495848-62496100(-)$1	252	182	204	12.1681
eee[cccrrrrrrrrrccc]ee	chr10:62545687-62545949(+)$1	262	162	184	8.6664
gggggggqqqqqqqqggggggg	chr14:56150920-56151169(+)$1	249	226	248	15.3094
cc!!cccqqqqqqqqccc333c	chr1:32508413-32508627(+)$1	214	150	172	15.1358
iiii[bbqqqqqqqqbb]iiii	chr5:179046637-179046955(-)$1	318	68	90	14.9164
fffa[bbqqqqqqqqbb]a]ff	chr10:74035222-74035599(+)$1	377	14	36	14.1449
c[cccbbqqqqqqqqbb]ccc]	chr1:145442467-145442716(+)$1	249	69	91	14.5388
dddd!!aqqqqqqqqa22dddd	chr8:128753520-128753767(+)$1	247	130	152	13.0846
gggggggqqqqqqqqggggggg	chr3:51435663-51435934(-)$1	271	31	53	15.3094
gggggggqqqqqqqqggggggg	chr7:155101668-155101913(+)$1	245	163	185	15.3094
e[bb[bbqqqqqqqqbb]bb]e	chr8:101715364-101715617(-)$1	253	104	126	13.5113
[ffffffrrrrrrrrrffffff	chr19:50886019-50886276(+)$1	257	146	168	8.1487
[ffffffrrrrrrrrrffffff	chr18:9923562-9923807(+)$1	245	177	199	8.1487
ccc[cccqqqqqqqqccc333c	chr11:65194922-65195144(+)$1	222	120	142	15.1177
dddd[bbqqqqqqqqbb]dddd	chr1:203823020-203823281(+)$1	261	145	167	13.5661
bffffffqqqqqqqqffffff7	chr11:65199254-65199554(+)$1	300	177	199	13.1724
d"""cccqqqqqqqqccc22dd	chr1:226170612-226170868(-)$1	256	32	54	13.9587
c!!ddddqqqqqqqqdddd22c	chr11:85989505-85989841(+)$1	336	223	245	13.0960
gggggggqqqqqqqqggggggg	chr7:127231546-127231814(+)$1	268	33	55	15.3094
e[bb[bbqqqqqqqqbb]bb]e	chr8:101715417-101715639(-)$1	222	126	148	13.5113
gggggggqqqqqqqqggggggg	chr1:1326945-1327187(-)$1	242	88	110	15.3094
ee[ddddqqqqqqqqdddd]ee	chr1:151376538-151376834(-)$1	296	67	89	13.0988
gggggggqqqqqqqqggggggg	chr19:34882458-34882717(+)$1	259	221	243	15.3094
ddd[cccqqqqqqqqccc]ddd	chr17:27589256-27589525(-)$1	269	241	263	14.2894
gggggggrrrrrrrrrgggggg	chr1:182352694-182352978(-)$1	284	193	215	9.4233
fffff[aqqqqqqqqa]fffff	chr1:32508369-32508613(+)$1	244	16	38	13.9460
cc!!cccqqqqqqqqccc]ccc	chr7:21554052-21554310(+)$1	258	125	147	15.0399
gggggbbqqqqqqqqbb4444g	chr7:100278803-100279081(-)$1	278	229	251	14.3612
gggggggqqqqqqqqggggggg	chr7:933158-933470(+)$1	312	232	254	15.3094

#otherMatches

#Seq PSSM
CAAAGGGGCGUCGGACAAGUGC	chr16:56643189-56643481(+)$1	292	40	62	13.7426
UGUGUGCUUGUGCGUGUCUACA	chr8:23429807-23430070(+)$1	263	44	66	13.9061
CAGUGUCAUGAUGUAGUAGUGU	chr4:83274927-83275217(-)$1	290	178	200	13.2276
UUCUCUUGCAGAUAUGAGAGAU	chr1:25568668-25568964(-)$1	296	49	71	14.1185
AAUAAUGGAACUUCAUAUUAUU	chr5:179046402-179046681(-)$1	279	101	123	13.2548
CUCUGCUUCUCUCAUAGCAGGA	chr11:62656138-62656384(+)$1	246	201	223	12.1681
AGGACUUUAAAACUUGGGCUGG	chr19:10406306-10406614(+)$1	308	229	251	13.9221
CUUAUUaaaaaaaaaaaaagaa	chr20:45838945-45839220(-)$1	275	110	132	11.4527
UCAGGCUUUAUUUCUGGUAUGA	chr3:33910861-33911121(+)$1	260	127	149	14.2894
AUCAAAUAAAGAAUAGUUUGGU	chr6:33377541-33377786(+)$1	245	72	94	15.3094
AUUUUUUCACUUGUAAAAAAAU	chr6:16148272-16148538(+)$1	266	104	126	13.2548
UUAUAUGUGUAUAUUUGUAUGG	chr10:69832442-69832690(-)$1	248	186	208	13.2548
CACAGCAACUGUAGAUGCUCCU	chr19:10578460-10578707(+)$1	247	143	165	12.7901
CAGAUUUUAUUAUGUAAAUCCC	chr6:17615407-17615629(-)$1	222	68	90	11.6977
UUUGAAAUACUAUUUUUUUAAA	chr6:26545668-26545956(+)$1	288	82	104	13.2548
UACAGAGUUAAUUUCCUUUGUA	chr1:202860148-202860430(-)$1	282	124	146	15.3094
UCUACAUUGUUAUAUGUGUGUG	chr17:38544691-38544930(-)$1	239	29	51	13.4140
UCUGCCGGACCUUAGUGGACAG	chr11:58385122-58385368(+)$1	246	42	64	13.8968
agaacuuccaacauugaguauu	chr15:30941972-30942252(+)$1	280	26	48	12.7344
UGAUAUGAAACCUCCUGUGUCG	chr1:78413984-78414248(-)$1	264	145	167	12.1681
UCUUUAAAAAAAAAAUUGGGGA	chr6:17615429-17615677(-)$1	248	170	192	15.0467
GUCUGUUAAUGUCUGAGGAGGU	chr19:34882765-34883100(+)$1	335	212	234	14.2690
UAUGGUGCACUUUUUCGCUAUU	chr17:62495848-62496100(-)$1	252	182	204	12.1681
CUAGGGCAGAGUGGUGGUUGUA	chr10:62545687-62545949(+)$1	262	162	184	8.6664
UAACAUUUUAAUACUGAUGUUG	chr14:56150920-56151169(+)$1	249	226	248	15.3094
GUUUCAAAAAUGACAUUGCUUG	chr1:32508413-32508627(+)$1	214	150	172	15.1358
UUGUUGUGUUUGUCAAUUAUAA	chr5:179046637-179046955(-)$1	318	68	90	14.9164
UACUGACAGUUAACAGUGGUGU	chr10:74035222-74035599(+)$1	377	14	36	14.1449
UAAAGACUAUAUUUUGUACUUA	chr1:145442467-145442716(+)$1	249	69	91	14.5388
UGGCAAAUAUAUCAUUGAGCCA	chr8:128753520-128753767(+)$1	247	130	152	13.0846
GGGGUAUUUCACAAUAUAUUUU	chr3:51435663-51435934(-)$1	271	31	53	15.3094
AAAUUUGCACUCUACCAGAUUU	chr7:155101668-155101913(+)$1	245	163	185	15.3094
UAUGGAAAAAAAACAUUGCaaa	chr8:101715364-101715617(-)$1	253	104	126	13.5113
CUCUCCCCCCUAGCCCGGGAGA	chr19:50886019-50886276(+)$1	257	146	168	8.1487
AACAGAUCCCCAAAAAAUCUGU	chr18:9923562-9923807(+)$1	245	177	199	8.1487
CACCUAGUAAACCUUCUGUCUG	chr11:65194922-65195144(+)$1	222	120	142	15.1177
UUCGUGUUCCGCAUUAUUUGAA	chr1:203823020-203823281(+)$1	261	145	167	13.5661
cuuuuggugucauauccaagaa	chr11:65199254-65199554(+)$1	300	177	199	13.1724
acuugcauuuuuaucuguucuc	chr1:226170612-226170868(-)$1	256	32	54	13.9587
ACUGUCUUCCUGCUCAGACUCU	chr11:85989505-85989841(+)$1	336	223	245	13.0960
GGGGCUUCCUGGCCAAGGCCCC	chr7:127231546-127231814(+)$1	268	33	55	15.3094
UAUGGAAAAAAAACAUUGCaaa	chr8:101715417-101715639(-)$1	222	126	148	13.5113
UGUAAAUUUUUGUAUGUUUAUA	chr1:1326945-1327187(-)$1	242	88	110	15.3094
UUAUUAUAUAUAUGGAUAAAAA	chr1:151376538-151376834(-)$1	296	67	89	13.0988
AUCUUCUAGUGUCUGAGGAGGU	chr19:34882458-34882717(+)$1	259	221	243	15.3094
GGCCAGAUUCCCCUCUCUAGUC	chr17:27589256-27589525(-)$1	269	241	263	14.2894
AAUUUGAGACAAAUAGUCGGAU	chr1:182352694-182352978(-)$1	284	193	215	9.4233
UGCAUUCUGGCUUCUGUAUGUA	chr1:32508369-32508613(+)$1	244	16	38	13.9460
AAUCCAGAAAAAAACCUGUUUC	chr7:21554052-21554310(+)$1	258	125	147	15.0399
ACCCCCCAGAAGGCGGGCCAUG	chr7:100278803-100279081(-)$1	278	229	251	14.3612
UGUUCACUGUGCUGUGUGAGCA	chr7:933158-933470(+)$1	312	232	254	15.3094

#DB
((....(........)...)))	chr16:56643189-56643481(+)$1	1	40	62	13.7426
((((.((........)).))))	chr8:23429807-23430070(+)$1	1	44	66	13.9061
((.((.(........))).)))	chr4:83274927-83275217(-)$1	1	178	200	13.2276
.((((((........)))))).	chr1:25568668-25568964(-)$1	1	49	71	14.1185
(((((((........)))))))	chr5:179046402-179046681(-)$1	1	101	123	13.2548
.((((((........)))))).	chr11:62656138-62656384(+)$1	1	201	223	12.1681
.((.(((........)))))..	chr19:10406306-10406614(+)$1	1	229	251	13.9221
(((.((........)).)))..	chr20:45838945-45839220(-)$1	1	110	132	11.4527
(((.(((........))).)))	chr3:33910861-33911121(+)$1	1	127	149	14.2894
(((((((........)))))))	chr6:33377541-33377786(+)$1	1	72	94	15.3094
(((((((........)))))))	chr6:16148272-16148538(+)$1	1	104	126	13.2548
(((((((........)))))))	chr10:69832442-69832690(-)$1	1	186	208	13.2548
((.((((........))))..)	chr19:10578460-10578707(+)$1	1	143	165	12.7901
..(((((........)))))..	chr6:17615407-17615629(-)$1	1	68	90	11.6977
(((((((........)))))))	chr6:26545668-26545956(+)$1	1	82	104	13.2548
(((((((........)))))))	chr1:202860148-202860430(-)$1	1	124	146	15.3094
(((((((........))))).)	chr17:38544691-38544930(-)$1	1	29	51	13.4140
.((((((........))).)))	chr11:58385122-58385368(+)$1	1	42	64	13.8968
(((((((........)))).))	chr15:30941972-30942252(+)$1	1	26	48	12.7344
.((((((........)))))).	chr1:78413984-78414248(-)$1	1	145	167	12.1681
(((((((........)))))))	chr6:17615429-17615677(-)$1	1	170	192	15.0467
.(((.((........)).))).	chr19:34882765-34883100(+)$1	1	212	234	14.2690
.((((((........)))))).	chr17:62495848-62496100(-)$1	1	182	204	12.1681
(((.(((.........))).))	chr10:62545687-62545949(+)$1	1	162	184	8.6664
(((((((........)))))))	chr14:56150920-56151169(+)$1	1	226	248	15.3094
((..(((........)))...)	chr1:32508413-32508627(+)$1	1	150	172	15.1358
((((.((........)).))))	chr5:179046637-179046955(-)$1	1	68	90	14.9164
((((.((........)).).))	chr10:74035222-74035599(+)$1	1	14	36	14.1449
(.(((((........)).))).	chr1:145442467-145442716(+)$1	1	69	91	14.5388
((((..(........)..))))	chr8:128753520-128753767(+)$1	1	130	152	13.0846
(((((((........)))))))	chr3:51435663-51435934(-)$1	1	31	53	15.3094
(((((((........)))))))	chr7:155101668-155101913(+)$1	1	163	185	15.3094
(.((.((........)).)).)	chr8:101715364-101715617(-)$1	1	104	126	13.5113
.((((((.........))))))	chr19:50886019-50886276(+)$1	1	146	168	8.1487
.((((((.........))))))	chr18:9923562-9923807(+)$1	1	177	199	8.1487
(((.(((........)))...)	chr11:65194922-65195144(+)$1	1	120	142	15.1177
((((.((........)).))))	chr1:203823020-203823281(+)$1	1	145	167	13.5661
(((((((........)))))).	chr11:65199254-65199554(+)$1	1	177	199	13.1724
(...(((........)))..))	chr1:226170612-226170868(-)$1	1	32	54	13.9587
(..((((........))))..)	chr11:85989505-85989841(+)$1	1	223	245	13.0960
(((((((........)))))))	chr7:127231546-127231814(+)$1	1	33	55	15.3094
(.((.((........)).)).)	chr8:101715417-101715639(-)$1	1	126	148	13.5113
(((((((........)))))))	chr1:1326945-1327187(-)$1	1	88	110	15.3094
((.((((........)))).))	chr1:151376538-151376834(-)$1	1	67	89	13.0988
(((((((........)))))))	chr19:34882458-34882717(+)$1	1	221	243	15.3094
(((.(((........))).)))	chr17:27589256-27589525(-)$1	1	241	263	14.2894
(((((((.........))))))	chr1:182352694-182352978(-)$1	1	193	215	9.4233
(((((.(........).)))))	chr1:32508369-32508613(+)$1	1	16	38	13.9460
((..(((........))).)))	chr7:21554052-21554310(+)$1	1	125	147	15.0399
(((((((........))....)	chr7:100278803-100279081(-)$1	1	229	251	14.3612
(((((((........)))))))	chr7:933158-933470(+)$1	1	232	254	15.3094

#PSSM
g : 0.21	d : 0.15	c : 0.13	e : 0.11	h : 0.07	: : 0.07	[ : 0.05	i : 0.03	f : 0.03	! : 0.01	$ : 0.01	" : 0.01	b : 0.01	
g : 0.21	f : 0.17	d : 0.13	c : 0.13	e : 0.07	h : 0.07	[ : 0.05	i : 0.03	b : 0.01	$ : 0.01	" : 0.01	! : 0.01	
g : 0.21	f : 0.17	c : 0.09	d : 0.09	e : 0.07	h : 0.07	[ : 0.05	b : 0.05	! : 0.05	i : 0.03	# : 0.01	" : 0.01	
g : 0.21	f : 0.15	[ : 0.11	d : 0.11	h : 0.07	e : 0.05	b : 0.05	c : 0.05	i : 0.03	! : 0.03	# : 0.01	a : 0.01	" : 0.01	
g : 0.21	c : 0.19	f : 0.15	[ : 0.13	h : 0.07	d : 0.07	b : 0.03	e : 0.03	# : 0.01	i : 0.01	! : 0.01	
b : 0.19	g : 0.19	c : 0.17	f : 0.13	h : 0.07	d : 0.07	[ : 0.03	e : 0.03	# : 0.01	i : 0.01	! : 0.01	
g : 0.19	b : 0.17	c : 0.17	f : 0.13	a : 0.07	h : 0.07	d : 0.07	e : 0.03	q : 0.01	i : 0.01	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
q : 0.92	r : 0.07	
q : 0.90	r : 0.07	b : 0.01	
b : 0.19	g : 0.17	c : 0.15	f : 0.09	a : 0.07	h : 0.07	d : 0.07	r : 0.07	e : 0.03	i : 0.01	
b : 0.19	g : 0.19	c : 0.17	f : 0.13	h : 0.07	d : 0.07	] : 0.03	e : 0.03	3 : 0.01	i : 0.01	2 : 0.01	
c : 0.19	g : 0.19	] : 0.15	f : 0.15	h : 0.07	d : 0.07	e : 0.03	3 : 0.01	b : 0.01	i : 0.01	2 : 0.01	4 : 0.01	
g : 0.19	f : 0.15	d : 0.11	] : 0.09	h : 0.07	c : 0.07	3 : 0.05	e : 0.05	b : 0.05	i : 0.03	a : 0.01	2 : 0.01	4 : 0.01	
g : 0.19	f : 0.15	d : 0.09	c : 0.09	e : 0.07	h : 0.07	] : 0.07	b : 0.05	2 : 0.05	i : 0.03	3 : 0.03	4 : 0.01	
g : 0.19	f : 0.17	d : 0.13	e : 0.07	h : 0.07	c : 0.07	3 : 0.05	2 : 0.05	] : 0.05	i : 0.03	8 : 0.01	4 : 0.01	
g : 0.21	d : 0.15	e : 0.11	c : 0.11	h : 0.07	f : 0.07	: : 0.05	] : 0.03	2 : 0.03	i : 0.03	3 : 0.01	8 : 0.01	7 : 0.01	

#score	688.6950003704379
#seq	51
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF890VLH_IGF2BP1_transcript_m1_run1.txt

#BEAR
:eeeeevvvvvvvvvvvvveeeee::	chr8:71495408-71495657(-)$1	249	203	229	19.6278
eeeee^^^^^^^^^^^^^^^^^^^^^	chr2:149542265-149542595(+)$1	330	51	77	17.8299
[ccccccvvvvvvvvvvvvvccc]cc	chr16:31198433-31198723(+)$1	290	16	42	21.9545
e[eeeeeuuuuuuuuuuuueeeee22	chr4:57368229-57368480(+)$1	251	68	94	23.0509
eeeeexxxxxxxxxxxxxxxeeeee6	chr22:22842846-22843149(-)$1	303	125	151	19.7663
ee!!cccuuuuuuuuuuuuccc22ee	chr15:52843747-52843986(-)$1	239	11	37	22.8521
ceeeeevvvvvvvvvvvvveeeee]c	chr1:241793911-241794198(-)$1	287	12	38	22.3268
fffffyyyyyyyyyyyyyyyyfffff	chr5:128449197-128449477(+)$1	280	77	103	23.1927
gggggggvvvvvvvvvvvvvgggggg	chr1:167757675-167757972(+)$1	297	32	58	22.4642
iiiiiiiitttttttttttiiiiiii	chr3:176739483-176739752(-)$1	269	234	260	20.4822
e"""ccctttttttttttccc]eeee	chr11:14507832-14508141(-)$1	309	162	188	20.8974
ggggg[bbtttttttttttbb]gggg	chr15:77777378-77777715(+)$1	337	189	215	20.9053
iiiiiiauuuuuuuuuuuua]iiiii	chr2:37430536-37430805(+)$1	269	164	190	23.4948
ggggggguuuuuuuuuuuuggggggg	chr1:167511230-167511505(-)$1	275	72	98	23.2405
ggggggguuuuuuuuuuuuggggggg	chr17:57721536-57721771(+)$1	235	133	159	23.2405
=====yyyyyyyyyyyyyyyy=====	chr22:22117910-22118150(-)$1	240	171	197	24.0887
ffffffxxxxxxxxxxxxxxxfffff	chr5:126888139-126888392(+)$1	253	92	118	19.2049
eeeee^^^^^^^^^^^^^^^^^^^^^	chr5:179157260-179157523(+)$1	263	4	30	17.8299
!!cccxxxxxxxxxxxxxxxccc333	chr12:133345878-133346161(-)$1	283	36	62	19.9169
$fffffftttttttttttffffff44	chr3:9879542-9879794(-)$1	252	75	101	19.8193
dddddddtttttttttttdddd333d	chr1:161753688-161753984(+)$1	296	104	130	19.5675
ffffffwwwwwwwwwwwwwwffffff	chr12:107366835-107367124(+)$1	289	106	132	21.8997
bb[cccvvvvvvvvvvvvvccc333b	chr5:179156567-179156778(+)$1	211	29	55	21.6874
gggg[bbuuuuuuuuuuuubb]gggg	chr11:47380085-47380337(-)$1	252	196	222	22.8922
eeeee^^^^^^^^^^^^^^^^^^^^^	chr8:117657192-117657439(-)$1	247	69	95	17.8299
b[eeeeeuuuuuuuuuuuueeeee]b	chr22:20110290-20110535(+)$1	245	99	125	22.8685
[ffffffuuuuuuuuuuuuffffff]	chrY:21153768-21154014(-)$1	246	156	182	22.2916
eeeeeyyyyyyyyyyyyyyyyeeeee	chr12:111158078-111158299(-)$1	221	38	64	23.9997
ee[cccvvvvvvvvvvvvvccc]eee	chr4:87968214-87968523(+)$1	309	190	216	22.2099
eeeeeyyyyyyyyyyyyyyyyeeeee	chr3:152176996-152177217(+)$1	221	167	193	23.9997
fff[cccxxxxxxxxxxxxxxxccc3	chr2:188329531-188329799(-)$1	268	231	257	19.2717
e!!ddddwwwwwwwwwwwwwwdddd2	chr18:56996647-56996897(-)$1	250	43	69	21.4427
:eeeeevvvvvvvvvvvvveeeee::	chr16:21991767-21992003(+)$1	236	150	176	19.6278
"""eeeeettttttttttteeeee]d	chr1:52486035-52486290(-)$1	255	23	49	20.4864
eeeee^^^^^^^^^^^^^^^^^^^^^	chr20:54944824-54945074(-)$1	250	19	45	17.8299
ggggggguuuuuuuuuuuuggggggg	chr2:74386242-74386481(-)$1	239	213	239	23.2405
h[ddddvvvvvvvvvvvvvdddd333	chr3:133307026-133307288(+)$1	262	72	98	21.4211
gggggggwwwwwwwwwwwwwwggggg	chr17:1584122-1584354(-)$1	232	72	98	22.7759
[bbyyyyyyyyyyyyyyyybb]gggg	chr19:34890710-34890942(+)$1	232	71	97	21.1472
ddddccctttttttttttccc]dddd	chr4:76569946-76570235(-)$1	289	168	194	19.9701
ggggggguuuuuuuuuuuuggggggg	chr11:73388627-73388842(-)$1	215	165	191	23.2405
eee[cccuuuuuuuuuuuuccc22ee	chr16:53190504-53190767(+)$1	263	119	145	22.9104
gggggggvvvvvvvvvvvvvgggggg	chr11:32953606-32953860(+)$1	254	178	204	22.4642
fffffbbuuuuuuuuuuuubb]ffff	chr1:205686141-205686396(-)$1	255	145	171	22.1167
bb[a!!bbtttttttttttbb22a]b	chr12:56991354-56991617(-)$1	263	214	240	19.2717
iiiiiiiwwwwwwwwwwwwwwiiiii	chr6:31797677-31797999(+)$1	322	2	28	22.5184
eeeee^^^^^^^^^^^^^^^^^^^^^	chr15:49171088-49171354(+)$1	266	229	255	17.8299
+eeeeeavvvvvvvvvvvvva]eeee	chr7:135612874-135613101(-)$1	227	71	97	22.0741
fffffyyyyyyyyyyyyyyyyfffff	chr2:24929885-24930164(+)$1	279	117	143	23.1927
ggggggxxxxxxxxxxxxxxxggggg	chr17:53853577-53853837(+)$1	260	126	152	20.2276
e!!ddddvvvvvvvvvvvvvdddd44	chr7:138239442-138239766(+)$1	324	247	273	21.4903
gggggggtttttttttttggggggg:	chr7:135612144-135612354(-)$1	210	73	99	20.0443
eeeeeyyyyyyyyyyyyyyyyeeeee	chr4:83745721-83745927(-)$1	206	156	182	23.9997
eeeee^^^^^^^^^^^^^^^^^^^^^	chr6:38644746-38644976(-)$1	230	175	201	17.8299
ggeeeeevvvvvvvvvvvvveeeee]	chr1:118068571-118068841(+)$1	270	146	172	22.4753
ggggggguuuuuuuuuuuuggggggg	chr3:185634947-185635207(-)$1	260	192	218	23.2405
eeeeeyyyyyyyyyyyyyyyyeeeee	chr12:111158202-111158468(-)$1	266	207	233	23.9997
bb[dddduuuuuuuuuuuudddd]bb	chr22:21307672-21307888(+)$1	216	168	194	21.1869
iiiiiyyyyyyyyyyyyyyyyiiiii	chr1:225977805-225978067(+)$1	262	160	186	23.8225
eeeeewwwwwwwwwwwwwweeeee33	chr1:241797858-241798172(-)$1	314	34	60	22.8738
bffffffuuuuuuuuuuuuffffff8	chr7:30673414-30673641(+)$1	227	129	155	21.6857
:ddddyyyyyyyyyyyyyyyydddd:	chr16:23584243-23584512(+)$1	269	214	240	20.8079
fff[cccxxxxxxxxxxxxxxxccc3	chr3:160219269-160219519(-)$1	250	13	39	19.2717
ggggggguuuuuuuuuuuuggggggg	chr22:22117371-22117592(-)$1	221	2	28	23.2405

#otherMatches

#Seq PSSM
AGCUGUGAAGAAGAAACCAACAGUAA	chr8:71495408-71495657(-)$1	249	203	229	19.6278
GUUGGCCACACCACUACAAACCACUU	chr2:149542265-149542595(+)$1	330	51	77	17.8299
UCAUCAUGAGAAACUGGAGAGUGCGU	chr16:31198433-31198723(+)$1	290	16	42	21.9545
GUGCUGAUUUGAUCUUUUUUCAGUUU	chr4:57368229-57368480(+)$1	251	68	94	23.0509
CCUUUUCCAGCAGCUUUUCCAAAGGA	chr22:22842846-22843149(-)$1	303	125	151	19.7663
UAGAGUUUUUGAUUAGUUUAACAGUG	chr15:52843747-52843986(-)$1	239	11	37	22.8521
AGGCUGGUGUUAAGCAGAACAGCCAU	chr1:241793911-241794198(-)$1	287	12	38	22.3268
GACUAUACUGAUUUCUUAUUUUGGUC	chr5:128449197-128449477(+)$1	280	77	103	23.1927
UGAGAAGUUUUUUUGAAGUUUUUCUC	chr1:167757675-167757972(+)$1	297	32	58	22.4642
UUUGUGGAAUAGCAGCAAAUCUACAA	chr3:176739483-176739752(-)$1	269	234	260	20.4822
CCCUGCUGUAAAAUAUGAAGCUGCUG	chr11:14507832-14508141(-)$1	309	162	188	20.8974
UCCUCUCUCCUCUGUGCUCAGUGAGG	chr15:77777378-77777715(+)$1	337	189	215	20.9053
uagagccauauuuuaaAAAGAGCUUU	chr2:37430536-37430805(+)$1	269	164	190	23.4948
AGCCAGUUUUCUGUCACAugcugguu	chr1:167511230-167511505(-)$1	275	72	98	23.2405
GGCUUCAGUACCCUGACUAUGGAGUC	chr17:57721536-57721771(+)$1	235	133	159	23.2405
CUUCCGUCUCCGGAAUCCUUGGGGAG	chr22:22117910-22118150(-)$1	240	171	197	24.0887
UGUCAAUUUUAAACAUAACUUUUGGC	chr5:126888139-126888392(+)$1	253	92	118	19.2049
AGGCUGUAUCUAUUUUUUUUUCUUUU	chr5:179157260-179157523(+)$1	263	4	30	17.8299
GUUCCCACUCUCUGCAAUAUGGAUCA	chr12:133345878-133346161(-)$1	283	36	62	19.9169
UGGGGCUCCGCUUACAAUAGUCCUCC	chr3:9879542-9879794(-)$1	252	75	101	19.8193
GGCAGAACCUCAGCCACUUUCUCCAG	chr1:161753688-161753984(+)$1	296	104	130	19.5675
GGUCAUUUAUUUCAUGCAGUAUGAUU	chr12:107366835-107367124(+)$1	289	106	132	21.8997
GUUGCUGAAAAUGAUUAUAAGCCCUG	chr5:179156567-179156778(+)$1	211	29	55	21.6874
acaucugggugugugugagcaagugu	chr11:47380085-47380337(-)$1	252	196	222	22.8922
UGGCUCUAUCUCUUUCUCAAAUGCAC	chr8:117657192-117657439(-)$1	247	69	95	17.8299
gguucgguguguguggugucuggggc	chr22:20110290-20110535(+)$1	245	99	125	22.8685
UUCGGCAGCACUUAUUUAAUGCCGAU	chrY:21153768-21154014(-)$1	246	156	182	22.2916
ACAAAGCCAUUCUUUUAAAUAUUUGU	chr12:111158078-111158299(-)$1	221	38	64	23.9997
AGCAGCAAUAACAGUAAAGGCUAUUG	chr4:87968214-87968523(+)$1	309	190	216	22.2099
UAUUUGUGGUGGUUUUUUUUAAGAUA	chr3:152176996-152177217(+)$1	221	167	193	23.9997
UAUGGUAUACAAAUUUUAUCAUUACA	chr2:188329531-188329799(-)$1	268	231	257	19.2717
UUAUGUUGAUAUUUAUCCUAGAACAC	chr18:56996647-56996897(-)$1	250	43	69	21.4427
UCCUGGAAGAAGUCGGGUCCCAGGCU	chr16:21991767-21992003(+)$1	236	150	176	19.6278
CUCCCACUUUACUCACCUUAGUGGUG	chr1:52486035-52486290(-)$1	255	23	49	20.4864
UCAGAAAGCUCCACAUCAAUAAACAU	chr20:54944824-54945074(-)$1	250	19	45	17.8299
GAGGAGGCCCACCUCAACACCUCCUU	chr2:74386242-74386481(-)$1	239	213	239	23.2405
GUGAACUAGUUUCAACAGUGUUCUUU	chr3:133307026-133307288(+)$1	262	72	98	21.4211
GUACAAGAUUGCUUUUCCUUACUUGU	chr17:1584122-1584354(-)$1	232	72	98	22.7759
UCCCUUCCCUUCCCUUCUUGGCAGAG	chr19:34890710-34890942(+)$1	232	71	97	21.1472
UUUCCAGUAGAAAAUAGUUUGUGAAA	chr4:76569946-76570235(-)$1	289	168	194	19.9701
UAACAUUUUUUUCUUUUUUAAUGUUA	chr11:73388627-73388842(-)$1	215	165	191	23.2405
UCAAUGUUAACCACCCACCACAGAUG	chr16:53190504-53190767(+)$1	263	119	145	22.9104
CCAGUCAAUUCAGGCACAACUGACUG	chr11:32953606-32953860(+)$1	254	178	204	22.4642
AAGUACAUCCCUGUGAUCCUGCUGCU	chr1:205686141-205686396(-)$1	255	145	171	22.1167
ugugugugugugugugugucagccuc	chr12:56991354-56991617(-)$1	263	214	240	19.2717
CUUUGAGGUGGACUGUUGGGACUCAA	chr6:31797677-31797999(+)$1	322	2	28	22.5184
GAUACUAAUUAUAUAAUGAGAAAAAA	chr15:49171088-49171354(+)$1	266	229	255	17.8299
UGAGUCCUUUUUUUAAUCCUGUGGCU	chr7:135612874-135613101(-)$1	227	71	97	22.0741
CUGCCAGUUCUCCAGUCCUCAGGCAG	chr2:24929885-24930164(+)$1	279	117	143	23.1927
GGGCUGGGCUGCCUUCUUCUACAGUU	chr17:53853577-53853837(+)$1	260	126	152	20.2276
GCAACCUUCCAUCUCUCAUCAGGUAA	chr7:138239442-138239766(+)$1	324	247	273	21.4903
AGCGAAAGGUUAAGUAAGUUUUGUUC	chr7:135612144-135612354(-)$1	210	73	99	20.0443
CCUCAUUCUAAAGACCACAUUUGAGG	chr4:83745721-83745927(-)$1	206	156	182	23.9997
AUUUGCCUUCUUCUGCCACCUAAAUA	chr6:38644746-38644976(-)$1	230	175	201	17.8299
UUGUCAAAACUCCAAAUUUGUUGAUA	chr1:118068571-118068841(+)$1	270	146	172	22.4753
AUACUUAUAUACCUGCAACUAAGUGU	chr3:185634947-185635207(-)$1	260	192	218	23.2405
ACAAAGCCAUUCUUUUAAAUAUUUGU	chr12:111158202-111158468(-)$1	266	207	233	23.9997
AUUUUGUGCUAUAAAAUUAACAGUAU	chr22:21307672-21307888(+)$1	216	168	194	21.1869
UACGAUAUUUGAUAAUUAUAUUUGUA	chr1:225977805-225978067(+)$1	262	160	186	23.8225
CCUGAUGAAUACCAAGCUUUCAGGCA	chr1:241797858-241798172(-)$1	314	34	60	22.8738
UUUACAAAAGAAAACAGCAUUGUGAU	chr7:30673414-30673641(+)$1	227	129	155	21.6857
CAGGAUAAUUUCUAUACAAUUUCCUU	chr16:23584243-23584512(+)$1	269	214	240	20.8079
GUAAGCAUAAAAGAGAAUAGGCUGCC	chr3:160219269-160219519(-)$1	250	13	39	19.2717
AAUGUGGGUGUUUCAGUAACCACGUU	chr22:22117371-22117592(-)$1	221	2	28	23.2405

#DB
.(((((.............)))))..	chr8:71495408-71495657(-)$1	1	203	229	19.6278
(((((.....................	chr2:149542265-149542595(+)$1	1	51	77	17.8299
.((((((.............))).))	chr16:31198433-31198723(+)$1	1	16	42	21.9545
(.(((((............)))))..	chr4:57368229-57368480(+)$1	1	68	94	23.0509
(((((...............))))).	chr22:22842846-22843149(-)$1	1	125	151	19.7663
((..(((............)))..))	chr15:52843747-52843986(-)$1	1	11	37	22.8521
((((((.............))))).)	chr1:241793911-241794198(-)$1	1	12	38	22.3268
(((((................)))))	chr5:128449197-128449477(+)$1	1	77	103	23.1927
(((((((.............))))))	chr1:167757675-167757972(+)$1	1	32	58	22.4642
((((((((...........)))))))	chr3:176739483-176739752(-)$1	1	234	260	20.4822
(...(((...........))).))))	chr11:14507832-14508141(-)$1	1	162	188	20.8974
(((((.((...........)).))))	chr15:77777378-77777715(+)$1	1	189	215	20.9053
(((((((............).)))))	chr2:37430536-37430805(+)$1	1	164	190	23.4948
(((((((............)))))))	chr1:167511230-167511505(-)$1	1	72	98	23.2405
(((((((............)))))))	chr17:57721536-57721771(+)$1	1	133	159	23.2405
(((((................)))))	chr22:22117910-22118150(-)$1	1	171	197	24.0887
((((((...............)))))	chr5:126888139-126888392(+)$1	1	92	118	19.2049
(((((.....................	chr5:179157260-179157523(+)$1	1	4	30	17.8299
..(((...............)))...	chr12:133345878-133346161(-)$1	1	36	62	19.9169
.((((((...........))))))..	chr3:9879542-9879794(-)$1	1	75	101	19.8193
(((((((...........))))...)	chr1:161753688-161753984(+)$1	1	104	130	19.5675
((((((..............))))))	chr12:107366835-107367124(+)$1	1	106	132	21.8997
((.(((.............)))...)	chr5:179156567-179156778(+)$1	1	29	55	21.6874
((((.((............)).))))	chr11:47380085-47380337(-)$1	1	196	222	22.8922
(((((.....................	chr8:117657192-117657439(-)$1	1	69	95	17.8299
(.(((((............))))).)	chr22:20110290-20110535(+)$1	1	99	125	22.8685
.((((((............)))))).	chrY:21153768-21154014(-)$1	1	156	182	22.2916
(((((................)))))	chr12:111158078-111158299(-)$1	1	38	64	23.9997
((.(((.............))).)))	chr4:87968214-87968523(+)$1	1	190	216	22.2099
(((((................)))))	chr3:152176996-152177217(+)$1	1	167	193	23.9997
(((.(((...............))).	chr2:188329531-188329799(-)$1	1	231	257	19.2717
(..((((..............)))).	chr18:56996647-56996897(-)$1	1	43	69	21.4427
.(((((.............)))))..	chr16:21991767-21992003(+)$1	1	150	176	19.6278
...(((((...........))))).)	chr1:52486035-52486290(-)$1	1	23	49	20.4864
(((((.....................	chr20:54944824-54945074(-)$1	1	19	45	17.8299
(((((((............)))))))	chr2:74386242-74386481(-)$1	1	213	239	23.2405
(.((((.............))))...	chr3:133307026-133307288(+)$1	1	72	98	21.4211
(((((((..............)))))	chr17:1584122-1584354(-)$1	1	72	98	22.7759
.((................)).))))	chr19:34890710-34890942(+)$1	1	71	97	21.1472
(((((((...........))).))))	chr4:76569946-76570235(-)$1	1	168	194	19.9701
(((((((............)))))))	chr11:73388627-73388842(-)$1	1	165	191	23.2405
(((.(((............)))..))	chr16:53190504-53190767(+)$1	1	119	145	22.9104
(((((((.............))))))	chr11:32953606-32953860(+)$1	1	178	204	22.4642
(((((((............)).))))	chr1:205686141-205686396(-)$1	1	145	171	22.1167
((.(..((...........))..).)	chr12:56991354-56991617(-)$1	1	214	240	19.2717
(((((((..............)))))	chr6:31797677-31797999(+)$1	1	2	28	22.5184
(((((.....................	chr15:49171088-49171354(+)$1	1	229	255	17.8299
.((((((.............).))))	chr7:135612874-135613101(-)$1	1	71	97	22.0741
(((((................)))))	chr2:24929885-24930164(+)$1	1	117	143	23.1927
((((((...............)))))	chr17:53853577-53853837(+)$1	1	126	152	20.2276
(..((((.............))))..	chr7:138239442-138239766(+)$1	1	247	273	21.4903
(((((((...........))))))).	chr7:135612144-135612354(-)$1	1	73	99	20.0443
(((((................)))))	chr4:83745721-83745927(-)$1	1	156	182	23.9997
(((((.....................	chr6:38644746-38644976(-)$1	1	175	201	17.8299
(((((((.............))))).	chr1:118068571-118068841(+)$1	1	146	172	22.4753
(((((((............)))))))	chr3:185634947-185635207(-)$1	1	192	218	23.2405
(((((................)))))	chr12:111158202-111158468(-)$1	1	207	233	23.9997
((.((((............)))).))	chr22:21307672-21307888(+)$1	1	168	194	21.1869
(((((................)))))	chr1:225977805-225978067(+)$1	1	160	186	23.8225
(((((..............)))))..	chr1:241797858-241798172(-)$1	1	34	60	22.8738
(((((((............)))))).	chr7:30673414-30673641(+)$1	1	129	155	21.6857
.((((................)))).	chr16:23584243-23584512(+)$1	1	214	240	20.8079
(((.(((...............))).	chr3:160219269-160219519(-)$1	1	13	39	19.2717
(((((((............)))))))	chr22:22117371-22117592(-)$1	1	2	28	23.2405

#PSSM
e : 0.29	g : 0.21	f : 0.10	b : 0.07	i : 0.06	: : 0.04	[ : 0.04	d : 0.03	c : 0.01	= : 0.01	! : 0.01	$ : 0.01	" : 0.01	h : 0.01	+ : 0.01	
e : 0.29	g : 0.21	f : 0.15	i : 0.06	b : 0.06	[ : 0.04	! : 0.04	d : 0.04	" : 0.03	c : 0.01	= : 0.01	
e : 0.31	g : 0.20	f : 0.15	i : 0.06	d : 0.06	[ : 0.06	! : 0.04	c : 0.03	" : 0.03	= : 0.01	b : 0.01	
e : 0.31	g : 0.20	f : 0.12	d : 0.10	c : 0.06	i : 0.06	[ : 0.04	! : 0.01	" : 0.01	= : 0.01	y : 0.01	a : 0.01	
e : 0.31	g : 0.18	c : 0.15	f : 0.12	d : 0.09	i : 0.06	= : 0.01	[ : 0.01	y : 0.01	! : 0.01	
g : 0.17	y : 0.15	c : 0.14	e : 0.12	^ : 0.09	f : 0.07	d : 0.07	i : 0.04	x : 0.03	b : 0.03	[ : 0.01	! : 0.01	w : 0.01	
y : 0.15	g : 0.15	c : 0.10	v : 0.09	^ : 0.09	e : 0.06	x : 0.06	b : 0.06	d : 0.06	f : 0.04	i : 0.03	a : 0.03	w : 0.03	
u : 0.25	v : 0.18	y : 0.15	^ : 0.09	x : 0.09	t : 0.07	w : 0.07	b : 0.03	i : 0.01	e : 0.01	
u : 0.25	v : 0.18	y : 0.15	t : 0.14	^ : 0.09	x : 0.09	w : 0.07	
u : 0.25	v : 0.18	y : 0.15	t : 0.14	^ : 0.09	x : 0.09	w : 0.07	
u : 0.25	v : 0.18	y : 0.15	t : 0.14	^ : 0.09	x : 0.09	w : 0.07	
u : 0.25	v : 0.18	y : 0.15	t : 0.14	^ : 0.09	x : 0.09	w : 0.07	
u : 0.25	v : 0.18	y : 0.15	t : 0.14	^ : 0.09	x : 0.09	w : 0.07	
u : 0.25	v : 0.18	y : 0.15	t : 0.14	^ : 0.09	x : 0.09	w : 0.07	
u : 0.25	v : 0.18	y : 0.15	t : 0.14	^ : 0.09	x : 0.09	w : 0.07	
u : 0.25	v : 0.18	y : 0.15	t : 0.14	^ : 0.09	x : 0.09	w : 0.07	
u : 0.25	v : 0.18	y : 0.15	t : 0.14	^ : 0.09	x : 0.09	w : 0.07	
u : 0.25	v : 0.18	y : 0.15	t : 0.14	^ : 0.09	x : 0.09	w : 0.07	
u : 0.25	v : 0.18	y : 0.15	^ : 0.09	x : 0.09	w : 0.07	t : 0.06	c : 0.03	f : 0.01	d : 0.01	g : 0.01	
y : 0.14	e : 0.10	g : 0.10	^ : 0.09	v : 0.09	x : 0.09	c : 0.09	b : 0.07	w : 0.06	f : 0.04	d : 0.04	i : 0.01	a : 0.01	
e : 0.14	y : 0.14	g : 0.14	c : 0.12	^ : 0.09	b : 0.07	x : 0.06	f : 0.06	d : 0.06	w : 0.04	i : 0.01	] : 0.01	a : 0.01	
e : 0.20	g : 0.17	f : 0.10	] : 0.10	^ : 0.09	c : 0.09	d : 0.09	i : 0.06	x : 0.03	= : 0.01	2 : 0.01	
e : 0.23	g : 0.21	f : 0.12	^ : 0.09	d : 0.09	c : 0.06	i : 0.06	2 : 0.04	3 : 0.03	= : 0.01	] : 0.01	
e : 0.25	g : 0.21	f : 0.12	^ : 0.09	i : 0.06	3 : 0.06	d : 0.06	] : 0.03	2 : 0.03	c : 0.03	= : 0.01	a : 0.01	
g : 0.21	e : 0.17	f : 0.10	^ : 0.09	3 : 0.07	] : 0.06	i : 0.06	c : 0.04	d : 0.04	: : 0.03	4 : 0.03	2 : 0.01	= : 0.01	b : 0.01	
g : 0.20	e : 0.14	^ : 0.09	f : 0.07	3 : 0.07	: : 0.06	i : 0.06	b : 0.06	d : 0.04	c : 0.03	2 : 0.03	4 : 0.03	] : 0.03	6 : 0.01	= : 0.01	8 : 0.01	

#score	1374.4634077771689
#seq	64
#width	26
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_CDS_m2_run1.txt

#BEAR
eeeeellleeeee	chr22:20112884-20113126(+)$1	242	160	173	7.1013
fffooooooffff	chr7:137569556-137569801(-)$1	245	98	111	6.8103
dddoooooodddd	chr9:140347013-140347254(-)$1	241	112	125	8.2345
cccooooooccc]	chr1:46073462-46073734(+)$1	272	31	44	7.2037
d[aooooooa]dd	chr9:139752458-139752721(+)$1	263	142	155	7.5622
eeeooooooeeee	chr10:3823637-3823884(-)$1	247	115	128	9.7634
eeeooooooeeee	chr21:37417701-37417951(-)$1	250	149	162	9.7634
eeeooooooeeee	chr9:97842981-97843250(+)$1	269	91	104	9.7634
ebboooooobb]e	chr14:24607715-24607942(+)$1	227	185	198	6.6262
eeeeemmmmeeee	chr2:182757286-182757556(+)$1	270	246	259	6.8526
eee[allla]eee	chr21:45557104-45557358(+)$1	254	216	229	7.0863
dddoooooodddd	chr16:87377026-87377317(-)$1	291	82	95	8.2345
eeeeemmmmeeee	chr7:142962140-142962388(+)$1	248	132	145	6.8526
eeeennnnneeee	chr8:94745810-94746093(-)$1	283	237	250	6.7388
eeeooooooeeee	chr16:70698650-70698890(-)$1	240	220	233	9.7634
cccooooooccc]	chr4:435991-436303(-)$1	312	125	138	7.2037
dddoooooodddd	chr3:9965632-9965874(+)$1	242	75	88	8.2345
eeeeemmmmeeee	chr9:139723832-139724108(+)$1	276	2	15	6.8526
dddoooooodddd	chr1:43396083-43396310(-)$1	227	202	215	8.2345
dddoooooodddd	chr11:61110205-61110491(+)$1	286	200	213	8.2345
eeeeellleeeee	chr19:1398695-1399006(-)$1	311	37	50	7.1013
eeeooooooeeee	chr15:41099389-41099642(-)$1	253	22	35	9.7634
gggoooooogggg	chr20:48759844-48760142(-)$1	298	176	189	7.3731
eeeeemmmmeeee	chr7:99631277-99631590(+)$1	313	4	17	6.8526
eeeeemmmmeeee	chr17:79532338-79532603(-)$1	265	210	223	6.8526
eeeeellleeeee	chr12:107168551-107168822(+)$1	271	223	236	7.1013
eeeooooooeeee	chr19:40740778-40741039(-)$1	261	172	185	9.7634
eeeooooooeeee	chr7:5429915-5430156(-)$1	241	103	116	9.7634
gggoooooogggg	chr7:150020569-150020829(+)$1	260	130	143	7.3731
eeeennnnneeee	chr9:74979409-74979681(-)$1	272	176	189	6.7388
eeeeemmmmeeee	chr17:4800039-4800289(+)$1	250	28	41	6.8526
eeeennnnneeee	chr16:66864539-66864852(-)$1	313	189	202	6.7388
eeeeellleeeee	chr6:35454069-35454358(-)$1	289	116	129	7.1013
eeeeellleeeee	chr20:43052819-43053100(+)$1	281	132	145	7.1013
eeeeemmmmeeee	chr7:99631050-99631365(+)$1	315	185	198	6.8526
dddoooooodddd	chr20:61299181-61299434(+)$1	253	110	123	8.2345
dddoooooodddd	chr14:78227256-78227525(-)$1	269	35	48	8.2345
eeeooooooeeee	chr21:45507700-45507977(+)$1	277	91	104	9.7634
dddoooooodddd	chr8:13072000-13072279(-)$1	279	139	152	8.2345
eeeooooooeeee	chr3:15247998-15248288(+)$1	290	240	253	9.7634
eeeooooooeeee	chr3:38167813-38168084(-)$1	271	155	168	9.7634
cccooooooccc]	chr16:279049-279353(-)$1	304	8	21	7.2037
cccooooooccc]	chr17:17720834-17721085(-)$1	251	47	60	7.2037
dddoooooodddd	chr2:71577016-71577254(+)$1	238	174	187	8.2345
dddoooooodddd	chr2:198284954-198285207(-)$1	253	70	83	8.2345
ccaooooooa]cc	chr20:3172239-3172488(-)$1	249	144	157	7.0816
eeeeellleeeee	chr4:76439214-76439465(-)$1	251	157	170	7.1013
eeeeemmmmeeee	chrX:70469651-70469986(-)$1	335	121	134	6.8526
dddoooooodddd	chr3:48732256-48732509(-)$1	253	73	86	8.2345
dddoooooodddd	chr1:43212733-43213023(-)$1	290	65	78	8.2345
eeeeellleeeee	chr19:48978137-48978394(+)$1	257	96	109	7.1013
eeeeemmmmeeee	chr16:28847368-28847611(+)$1	243	95	108	6.8526
eeeooooooeeee	chr8:145140339-145140582(+)$1	243	131	144	9.7634
eeeeemmmmeeee	chr1:43396149-43396368(-)$1	219	6	19	6.8526
c[aooooooaccc	chr19:50905310-50905631(+)$1	321	84	97	7.1191
eeeeemmmmeeee	chr5:177631659-177631951(+)$1	292	106	119	6.8526

#otherMatches

#Seq PSSM
CUUUUGGGGAGAG	chr22:20112884-20113126(+)$1	242	160	173	7.1013
UUAUUUCCCUAGA	chr7:137569556-137569801(-)$1	245	98	111	6.8103
CCCCACCCUGGGC	chr9:140347013-140347254(-)$1	241	112	125	8.2345
UCAAGCCAGUGGA	chr1:46073462-46073734(+)$1	272	31	44	7.2037
UGGACCCGCUGAG	chr9:139752458-139752721(+)$1	263	142	155	7.5622
UGGAGGGAGCCGG	chr10:3823637-3823884(-)$1	247	115	128	9.7634
UGGGUGGCACCAC	chr21:37417701-37417951(-)$1	250	149	162	9.7634
UCUUUCAGCAGAU	chr9:97842981-97843250(+)$1	269	91	104	9.7634
GCCACUGGAGGCC	chr14:24607715-24607942(+)$1	227	185	198	6.6262
UCUAAGCGAUUAG	chr2:182757286-182757556(+)$1	270	246	259	6.8526
GCAGGGCACGUGC	chr21:45557104-45557358(+)$1	254	216	229	7.0863
GCCACAAAGGGCC	chr16:87377026-87377317(-)$1	291	82	95	8.2345
CCCCCGCCCGGGG	chr7:142962140-142962388(+)$1	248	132	145	6.8526
AGAUAAUGAAUCU	chr8:94745810-94746093(-)$1	283	237	250	6.7388
UCAGCACGGUGAG	chr16:70698650-70698890(-)$1	240	220	233	9.7634
GAGAAAAACCUUA	chr4:435991-436303(-)$1	312	125	138	7.2037
AGGCCUCCCCCUU	chr3:9965632-9965874(+)$1	242	75	88	8.2345
CUGUCCCCAGGCG	chr9:139723832-139724108(+)$1	276	2	15	6.8526
ACUCUUCUCAGUC	chr1:43396083-43396310(-)$1	227	202	215	8.2345
cagauaagccuga	chr11:61110205-61110491(+)$1	286	200	213	8.2345
CUCCUGGGGGGAG	chr19:1398695-1399006(-)$1	311	37	50	7.1013
CAGAUGGACCUGU	chr15:41099389-41099642(-)$1	253	22	35	9.7634
GUGUGUGUCCACA	chr20:48759844-48760142(-)$1	298	176	189	7.3731
GCUUCACGAGAAG	chr7:99631277-99631590(+)$1	313	4	17	6.8526
CGAGUAGAGACUC	chr17:79532338-79532603(-)$1	265	210	223	6.8526
AUGCAUCCUGCAU	chr12:107168551-107168822(+)$1	271	223	236	7.1013
GCCCUCGAAGGCC	chr19:40740778-40741039(-)$1	261	172	185	9.7634
UGGCAGCAUCCAG	chr7:5429915-5430156(-)$1	241	103	116	9.7634
GCCCGUGCCGGCC	chr7:150020569-150020829(+)$1	260	130	143	7.3731
CCGCGGAUGGCGG	chr9:74979409-74979681(-)$1	272	176	189	6.7388
GAGCUCAGAGGCU	chr17:4800039-4800289(+)$1	250	28	41	6.8526
GCCUUCCUCAGGC	chr16:66864539-66864852(-)$1	313	189	202	6.7388
GUACGGUGCGUGC	chr6:35454069-35454358(-)$1	289	116	129	7.1013
cucacacagugag	chr20:43052819-43053100(+)$1	281	132	145	7.1013
GUUCCCACGGGAA	chr7:99631050-99631365(+)$1	315	185	198	6.8526
UCCUCCCCUGGAC	chr20:61299181-61299434(+)$1	253	110	123	8.2345
GCUGGAAGAAGCG	chr14:78227256-78227525(-)$1	269	35	48	8.2345
GUUACCACAGACC	chr21:45507700-45507977(+)$1	277	91	104	9.7634
ACCUAGGCCGGUG	chr8:13072000-13072279(-)$1	279	139	152	8.2345
CCUCUUGUUGGGA	chr3:15247998-15248288(+)$1	290	240	253	9.7634
UGGAAUAGACCAG	chr3:38167813-38168084(-)$1	271	155	168	9.7634
GGCUACCAUGUCC	chr16:279049-279353(-)$1	304	8	21	7.2037
CUGACAGCCCAGU	chr17:17720834-17721085(-)$1	251	47	60	7.2037
UAAAAAGAAUUAC	chr2:71577016-71577254(+)$1	238	174	187	8.2345
CUUUUCUAUAAGU	chr2:198284954-198285207(-)$1	253	70	83	8.2345
UGCCCUAAAGAUA	chr20:3172239-3172488(-)$1	249	144	157	7.0816
CCUGAUUUUCAGG	chr4:76439214-76439465(-)$1	251	157	170	7.1013
UCAGUGGGGGCUG	chrX:70469651-70469986(-)$1	335	121	134	6.8526
GAGCCCUCACUCC	chr3:48732256-48732509(-)$1	253	73	86	8.2345
UCGACACAGCGAG	chr1:43212733-43213023(-)$1	290	65	78	8.2345
CCUCCGcaggagg	chr19:48978137-48978394(+)$1	257	96	109	7.1013
CCUGGAUUUCCAG	chr16:28847368-28847611(+)$1	243	95	108	6.8526
UACAGGGUGGUAA	chr8:145140339-145140582(+)$1	243	131	144	9.7634
GCCCUUCGUGGGG	chr1:43396149-43396368(-)$1	219	6	19	6.8526
CAGGAUCAGCGGG	chr19:50905310-50905631(+)$1	321	84	97	7.1191
GCUCUGGCGGGAG	chr5:177631659-177631951(+)$1	292	106	119	6.8526

#DB
(((((...)))))	chr22:20112884-20113126(+)$1	1	160	173	7.1013
(((......))))	chr7:137569556-137569801(-)$1	1	98	111	6.8103
(((......))))	chr9:140347013-140347254(-)$1	1	112	125	8.2345
(((......))).	chr1:46073462-46073734(+)$1	1	31	44	7.2037
(.(......).))	chr9:139752458-139752721(+)$1	1	142	155	7.5622
(((......))))	chr10:3823637-3823884(-)$1	1	115	128	9.7634
(((......))))	chr21:37417701-37417951(-)$1	1	149	162	9.7634
(((......))))	chr9:97842981-97843250(+)$1	1	91	104	9.7634
(((......)).)	chr14:24607715-24607942(+)$1	1	185	198	6.6262
(((((....))))	chr2:182757286-182757556(+)$1	1	246	259	6.8526
(((.(...).)))	chr21:45557104-45557358(+)$1	1	216	229	7.0863
(((......))))	chr16:87377026-87377317(-)$1	1	82	95	8.2345
(((((....))))	chr7:142962140-142962388(+)$1	1	132	145	6.8526
((((.....))))	chr8:94745810-94746093(-)$1	1	237	250	6.7388
(((......))))	chr16:70698650-70698890(-)$1	1	220	233	9.7634
(((......))).	chr4:435991-436303(-)$1	1	125	138	7.2037
(((......))))	chr3:9965632-9965874(+)$1	1	75	88	8.2345
(((((....))))	chr9:139723832-139724108(+)$1	1	2	15	6.8526
(((......))))	chr1:43396083-43396310(-)$1	1	202	215	8.2345
(((......))))	chr11:61110205-61110491(+)$1	1	200	213	8.2345
(((((...)))))	chr19:1398695-1399006(-)$1	1	37	50	7.1013
(((......))))	chr15:41099389-41099642(-)$1	1	22	35	9.7634
(((......))))	chr20:48759844-48760142(-)$1	1	176	189	7.3731
(((((....))))	chr7:99631277-99631590(+)$1	1	4	17	6.8526
(((((....))))	chr17:79532338-79532603(-)$1	1	210	223	6.8526
(((((...)))))	chr12:107168551-107168822(+)$1	1	223	236	7.1013
(((......))))	chr19:40740778-40741039(-)$1	1	172	185	9.7634
(((......))))	chr7:5429915-5430156(-)$1	1	103	116	9.7634
(((......))))	chr7:150020569-150020829(+)$1	1	130	143	7.3731
((((.....))))	chr9:74979409-74979681(-)$1	1	176	189	6.7388
(((((....))))	chr17:4800039-4800289(+)$1	1	28	41	6.8526
((((.....))))	chr16:66864539-66864852(-)$1	1	189	202	6.7388
(((((...)))))	chr6:35454069-35454358(-)$1	1	116	129	7.1013
(((((...)))))	chr20:43052819-43053100(+)$1	1	132	145	7.1013
(((((....))))	chr7:99631050-99631365(+)$1	1	185	198	6.8526
(((......))))	chr20:61299181-61299434(+)$1	1	110	123	8.2345
(((......))))	chr14:78227256-78227525(-)$1	1	35	48	8.2345
(((......))))	chr21:45507700-45507977(+)$1	1	91	104	9.7634
(((......))))	chr8:13072000-13072279(-)$1	1	139	152	8.2345
(((......))))	chr3:15247998-15248288(+)$1	1	240	253	9.7634
(((......))))	chr3:38167813-38168084(-)$1	1	155	168	9.7634
(((......))).	chr16:279049-279353(-)$1	1	8	21	7.2037
(((......))).	chr17:17720834-17721085(-)$1	1	47	60	7.2037
(((......))))	chr2:71577016-71577254(+)$1	1	174	187	8.2345
(((......))))	chr2:198284954-198285207(-)$1	1	70	83	8.2345
(((......).))	chr20:3172239-3172488(-)$1	1	144	157	7.0816
(((((...)))))	chr4:76439214-76439465(-)$1	1	157	170	7.1013
(((((....))))	chrX:70469651-70469986(-)$1	1	121	134	6.8526
(((......))))	chr3:48732256-48732509(-)$1	1	73	86	8.2345
(((......))))	chr1:43212733-43213023(-)$1	1	65	78	8.2345
(((((...)))))	chr19:48978137-48978394(+)$1	1	96	109	7.1013
(((((....))))	chr16:28847368-28847611(+)$1	1	95	108	6.8526
(((......))))	chr8:145140339-145140582(+)$1	1	131	144	9.7634
(((((....))))	chr1:43396149-43396368(-)$1	1	6	19	6.8526
(.(......))))	chr19:50905310-50905631(+)$1	1	84	97	7.1191
(((((....))))	chr5:177631659-177631951(+)$1	1	106	119	6.8526

#PSSM
e : 0.60	d : 0.23	c : 0.10	g : 0.03	f : 0.01	
e : 0.58	d : 0.21	c : 0.08	[ : 0.03	g : 0.03	f : 0.01	b : 0.01	
e : 0.58	d : 0.21	c : 0.07	a : 0.05	g : 0.03	f : 0.01	b : 0.01	
o : 0.60	e : 0.37	[ : 0.01	
o : 0.60	e : 0.32	n : 0.05	a : 0.01	
o : 0.60	m : 0.19	l : 0.14	n : 0.05	
o : 0.60	m : 0.19	l : 0.14	n : 0.05	
o : 0.60	m : 0.19	l : 0.14	n : 0.05	
o : 0.60	m : 0.19	e : 0.12	n : 0.05	a : 0.01	
e : 0.57	d : 0.21	c : 0.07	a : 0.05	g : 0.03	f : 0.01	b : 0.01	] : 0.01	
e : 0.58	d : 0.21	c : 0.08	] : 0.03	g : 0.03	f : 0.01	b : 0.01	
e : 0.58	d : 0.23	c : 0.10	g : 0.03	f : 0.01	] : 0.01	
e : 0.60	d : 0.23	] : 0.07	g : 0.03	c : 0.03	f : 0.01	

#score	437.36502016284805
#seq	56
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF342PGS_HNRNPM_CDS_m2_run2.txt

#BEAR
eee!!bb!!cccmmmmccc22bb33	chr18:8609607-8609929(+)$1	322	79	104	9.3231
dd[a[gggggggmmmmggggggga]	chr17:29632205-29632464(+)$1	259	137	162	9.6305
!!eeeee[ddddmmmmddddeeeee	chr9:101867464-101867740(+)$1	276	22	47	12.0216
d::eeeeeddddmmmmdddd]eeee	chr16:74330666-74330962(+)$1	296	54	79	9.8990
a[ccc"""cccmmmmccc]ccc]a]	chr19:18418202-18418465(-)$1	263	133	158	8.5774
dd[a[gggggggmmmmggggggga]	chr17:29632114-29632405(+)$1	291	228	253	9.6305
ddd!!cccddddmmmmdddd]cccd	chr11:59382807-59383100(-)$1	293	35	60	12.3575
c!!eeeeeddddmmmmdddd66666	chr19:8550805-8551049(+)$1	244	166	191	10.4055
dd[a[gggggggmmmmggggggga]	chr17:29632268-29632524(+)$1	256	74	99	9.6305
ccc[a[bbddddllldddd]bb]a]	chr19:8551017-8551241(+)$1	224	128	153	9.2185
hhh$$$$$ddddmmmmddddhhhhh	chr6:170123880-170124234(-)$1	354	203	228	10.1156
ccc!!gggggggmmmmggggggg33	chr3:196295789-196296102(+)$1	313	241	266	9.7109
!!ccc####cccmmmmccc22ccc2	chr17:80789333-80789590(+)$1	257	203	228	10.2499
[dddd!!eeeeemmmmeeeeedddd	chr17:1552925-1553197(-)$1	272	150	175	9.5341
ca[bb"""ddddmmmmdddd333bb	chr2:201728827-201729098(-)$1	271	213	238	12.1159
ffccc"""ddddmmmmdddd22ccc	chr11:61644789-61645083(-)$1	294	98	123	12.7478
ggggggg[ddddmmmmdddd]gggg	chr7:104752502-104752754(-)$1	252	163	188	12.9014
"""dddd[ddddmmmmddddddddg	chr3:99567538-99567834(+)$1	296	7	32	12.4307
lffffff:ddddmmmmdddd=====	chr12:121125066-121125367(+)$1	301	140	165	10.2993
FFFFddddddddmmmmdddd22ddd	chr7:156432977-156433302(-)$1	325	261	286	10.1922
dddd[bb!!cccmmmmccc]bb]dd	chr16:2301257-2301524(-)$1	267	34	59	8.8478
!!dddd!!ddddmmmmdddd22ddd	chr7:65446929-65447298(-)$1	369	292	317	12.8851
ggggggg[ddddllldddd22gggg	chr19:40331266-40331525(-)$1	259	89	114	10.1341
[ccca[a[ddddmmmmdddd]a]a]	chr2:97482430-97482743(+)$1	313	272	297	13.6063
ffffff!!ddddllldddd22ffff	chr19:8550626-8550907(+)$1	281	218	243	9.1960
C:ccc[a[ddddmmmmdddd]accc	chr19:47549171-47549437(-)$1	266	2	27	11.3375
ffff[ccc[ddddllldddd22ccc	chr9:37784684-37785100(-)$1	416	26	51	9.2172
gggggcccddddmmmmdddddddd[	chr20:5986972-5987288(+)$1	316	109	134	11.6153
e[eeeee[ddddmmmmddddeeeee	chr22:21212832-21213156(-)$1	324	179	204	11.8615
eeccc[ddddoooooodddd]ccc]	chr2:11484151-11484474(-)$1	323	149	174	9.3021
eeee[ddddcccmmmmccc]dddd]	chr4:520777-521058(+)$1	281	152	177	9.6625
fbb[ddddddddmmmmdddd]dddd	chr1:248020655-248020940(+)$1	285	41	66	11.6985
:===========mmmm=========	chr17:80789598-80789920(+)$1	322	154	179	8.9788
ffff!!a[ddddmmmmddddaffff	chr8:145149889-145150126(+)$1	237	106	131	12.0988
========ddddmmmmddddeeeee	chr11:108093067-108093362(-)$1	295	204	229	12.1995
dddddgggggggmmmmggggggg]d	chr2:97482543-97482864(+)$1	321	93	118	8.7468
ff[a[bb[ddddmmmmddddbb]a3	chr6:31371352-31371637(+)$1	285	245	270	12.0883
cc!!bb[eeeeemmmmeeeeebbcc	chr7:6071033-6071337(-)$1	304	219	244	8.8500
::dddd!!ddddmmmmdddd22ddd	chr19:8550707-8551005(+)$1	298	235	260	10.8736
c!!eeeeeddddmmmmdddd66666	chr19:8550939-8551217(+)$1	278	32	57	10.4055
]bbiiiiiiiiimmmmiiiiiiiii	chr1:245025909-245026178(-)$1	269	80	105	8.5326
c[dddd[eeeeemmmmeeeeedddd	chr19:55897973-55898227(+)$1	254	189	214	9.5120
[bb[ddddddddmmmmdddd66666	chr7:6075407-6075693(-)$1	286	82	107	9.8607
b[dddd!!ddddmmmmdddddddd]	chr9:140446425-140446710(+)$1	285	49	74	12.6246
ddd[dddd[ddddllldddddddd]	chr17:29622238-29622497(+)$1	259	25	50	9.1832
d!!ccca[ddddmmmmdddd]a]cc	chr19:8551122-8551339(+)$1	217	9	34	13.3509
!!ccc!!eeeeemmmmeeeeeccc2	chr2:10583515-10583729(-)$1	214	164	189	10.1868
"""dddd[ddddmmmmddddddddg	chr3:99567351-99567606(+)$1	255	194	219	12.4307
ffffff!!ddddllldddd22ffff	chr5:137089641-137089900(-)$1	259	115	140	9.1960
h!!dddd[ddddmmmmdddddddd2	chr16:777314-777622(+)$1	308	89	114	12.4313
ee[cccdddd[ammmma]dddd444	chr17:80866136-80866390(+)$1	254	46	71	10.2743
ccc[a[a[ddddmmmmdddd]a]a]	chr16:2059503-2059750(-)$1	247	12	37	13.6789

#otherMatches

#Seq PSSM
ggcggcgggcggcgggccgagcggg	chr18:8609607-8609929(+)$1	322	79	104	9.3231
AUGUGCUUCUGGUUUUUCAGAAGAG	chr17:29632205-29632464(+)$1	259	137	162	9.6305
CAUGGAGGCGGCGGUCGCUGCUCCG	chr9:101867464-101867740(+)$1	276	22	47	12.0216
GGAACUGGGCCUGAAAGGGUACCGG	chr16:74330666-74330962(+)$1	296	54	79	9.8990
CGGGCACAGGCAGAGGCCAGCCAGA	chr19:18418202-18418465(-)$1	263	133	158	8.5774
AUGUGCUUCUGGUUUUUCAGAAGAG	chr17:29632114-29632405(+)$1	291	228	253	9.6305
gccggucccccaguggugggaggag	chr11:59382807-59383100(-)$1	293	35	60	12.3575
GGCCUGGAGCGCAUGGGCGCCAACA	chr19:8550805-8551049(+)$1	244	166	191	10.4055
AUGUGCUUCUGGUUUUUCAGAAGAG	chr17:29632268-29632524(+)$1	256	74	99	9.6305
GGUGGCGGUGGCGGUGCCAGCUUUG	chr19:8551017-8551241(+)$1	224	128	153	9.2185
gcugauggcggcggcggccgggcCC	chr6:170123880-170124234(-)$1	354	203	228	10.1156
GCGCCCUGGUGUGCAAGCACUGGUA	chr3:196295789-196296102(+)$1	313	241	266	9.7109
GAGCUCCCAGCCAGCAGGUAAGGCG	chr17:80789333-80789590(+)$1	257	203	228	10.2499
GCCGCGGGGUCGGCAUCGGCCGCGG	chr17:1552925-1553197(-)$1	272	150	175	9.5341
GGGAUUUGCUGGGGUUCCAGAAUGU	chr2:201728827-201729098(-)$1	271	213	238	12.1159
GCGGUGAGUGGGGUUGCCCAGGACC	chr11:61644789-61645083(-)$1	294	98	123	12.7478
CCAUGCUGUACAGGUGUGUGAGGCG	chr7:104752502-104752754(-)$1	252	163	188	12.9014
AACCACAAGACUCUGGGGUCUGUGC	chr3:99567538-99567834(+)$1	296	7	32	12.4307
ggccggcgcggcgggggccgggcUG	chr12:121125066-121125367(+)$1	301	140	165	10.2993
AGCCGCCCGCCCACCUGGGCCUGGG	chr7:156432977-156433302(-)$1	325	261	286	10.1922
UCGGGCCGGGGCCGGGGCCAGGACC	chr16:2301257-2301524(-)$1	267	34	59	8.8478
ACGCCGGGGCUUCGAGGAGCAGUGG	chr7:65446929-65447298(-)$1	369	292	317	12.8851
CCCCCACAGGAUUCAGUCCCCGUGG	chr19:40331266-40331525(-)$1	259	89	114	10.1341
GGCUCGUGUUCCUGGUGGGAGAGGU	chr2:97482430-97482743(+)$1	313	272	297	13.6063
GGGCUCUGGCGUGGAGCGCAUGGGC	chr19:8550626-8550907(+)$1	281	218	243	9.1960
GACCCAUGCAGCUGACGCUgggggg	chr19:47549171-47549437(-)$1	266	2	27	11.3375
GGGUACCGGAAACGGUGUUUGGUGG	chr9:37784684-37785100(-)$1	416	26	51	9.2172
GGCCAGCGGAACCACUGUUCGGGCG	chr20:5986972-5987288(+)$1	316	109	134	11.6153
ggcggaggcggcggcggcugcuccg	chr22:21212832-21213156(-)$1	324	179	204	11.8615
CUAGGCCCCGAGGCUGCGGGACCUG	chr2:11484151-11484474(-)$1	323	149	174	9.3021
GGCGCUGGGGCUGCUGGGCGUCUAC	chr4:520777-521058(+)$1	281	152	177	9.6625
CGCAGGGCGGCGUCUACGCCUGUCC	chr1:248020655-248020940(+)$1	285	41	66	11.6985
GACACGGCCUUGGCAGUGGGGUUGU	chr17:80789598-80789920(+)$1	322	154	179	8.9788
GGCCAAGAUGGCGGCAGCUGCGGCU	chr8:145149889-145150126(+)$1	237	106	131	12.0988
AAGGUUUUCCCUUGGUAGGGAAGCU	chr11:108093067-108093362(-)$1	295	204	229	12.1995
CGCUGGCGGUGCUGCUGUACCGCGC	chr2:97482543-97482864(+)$1	321	93	118	8.7468
CGCAGGGAGCUGGACGCGGCCCGUU	chr6:31371352-31371637(+)$1	285	245	270	12.0883
UCAUGAUGGCUUCAUAGAGUUUCGA	chr7:6071033-6071337(-)$1	304	219	244	8.8500
UGGGCCCCGUGAUGGAUCGCAUGGC	chr19:8550707-8551005(+)$1	298	235	260	10.8736
GGCCUGGAGCGCAUGGGCGCCAACA	chr19:8550939-8551217(+)$1	278	32	57	10.4055
CGGAACGGAAAAGCGUUUUUUUGUU	chr1:245025909-245026178(-)$1	269	80	105	8.5326
CGGGCAUcccuggcgccaggguguu	chr19:55897973-55898227(+)$1	254	189	214	9.5120
UCAUGGAUGGCUGUUUGGCCCUUGU	chr7:6075407-6075693(-)$1	286	82	107	9.8607
ggggcuggccgggUUCCCGGGGCCG	chr9:140446425-140446710(+)$1	285	49	74	12.6246
GACCAUUCCAUCUUGGAGAUGAAUA	chr17:29622238-29622497(+)$1	259	25	50	9.1832
UGGGCCUGGCCAUGGGUGGCGGUGG	chr19:8551122-8551339(+)$1	217	9	34	13.3509
CUAGUCUUAAUUCUAGAGUUAACUU	chr2:10583515-10583729(-)$1	214	164	189	10.1868
AACCACAAGACUCUGGGGUCUGUGC	chr3:99567351-99567606(+)$1	255	194	219	12.4307
CAGGGCGGGGGCAAGGCCCGGGCCU	chr5:137089641-137089900(-)$1	259	115	140	9.1960
UCGCACAGCCCUUCCUAGGGUGUGG	chr16:777314-777622(+)$1	308	89	114	12.4313
GCAGCUggggucugaugucuccuga	chr17:80866136-80866390(+)$1	254	46	71	10.2743
ccggggggcgccgaggggcggcgcg	chr16:2059503-2059750(-)$1	247	12	37	13.6789

#DB
(((..((..(((....)))..))..	chr18:8609607-8609929(+)$1	1	79	104	9.3231
((.(.(((((((....)))))))).	chr17:29632205-29632464(+)$1	1	137	162	9.6305
..(((((.((((....)))))))))	chr9:101867464-101867740(+)$1	1	22	47	12.0216
)..(((((((((....)))).))))	chr16:74330666-74330962(+)$1	1	54	79	9.8990
(.(((...(((....))).))).).	chr19:18418202-18418465(-)$1	1	133	158	8.5774
((.(.(((((((....)))))))).	chr17:29632114-29632405(+)$1	1	228	253	9.6305
(((..(((((((....)))).))))	chr11:59382807-59383100(-)$1	1	35	60	12.3575
(..(((((((((....)))).....	chr19:8550805-8551049(+)$1	1	166	191	10.4055
((.(.(((((((....)))))))).	chr17:29632268-29632524(+)$1	1	74	99	9.6305
(((.(.((((((...)))).)).).	chr19:8551017-8551241(+)$1	1	128	153	9.2185
(((.....((((....)))))))))	chr6:170123880-170124234(-)$1	1	203	228	10.1156
(((..(((((((....)))))))..	chr3:196295789-196296102(+)$1	1	241	266	9.7109
..(((....(((....)))..))).	chr17:80789333-80789590(+)$1	1	203	228	10.2499
.((((..(((((....)))))))))	chr17:1552925-1553197(-)$1	1	150	175	9.5341
)(.((...((((....))))...))	chr2:201728827-201729098(-)$1	1	213	238	12.1159
))(((...((((....))))..)))	chr11:61644789-61645083(-)$1	1	98	123	12.7478
(((((((.((((....)))).))))	chr7:104752502-104752754(-)$1	1	163	188	12.9014
...((((.((((....)))))))))	chr3:99567538-99567834(+)$1	1	7	32	12.4307
.)))))).((((....))))(((((	chr12:121125066-121125367(+)$1	1	140	165	10.2993
))))((((((((....))))..)))	chr7:156432977-156433302(-)$1	1	261	286	10.1922
((((.((..(((....))).)).))	chr16:2301257-2301524(-)$1	1	34	59	8.8478
..((((..((((....))))..)))	chr7:65446929-65447298(-)$1	1	292	317	12.8851
(((((((.((((...))))..))))	chr19:40331266-40331525(-)$1	1	89	114	10.1341
.((((.(.((((....)))).).).	chr2:97482430-97482743(+)$1	1	272	297	13.6063
((((((..((((...))))..))))	chr19:8550626-8550907(+)$1	1	218	243	9.1960
(.(((.(.((((....)))).))))	chr19:47549171-47549437(-)$1	1	2	27	11.3375
((((.(((.((((...))))..)))	chr9:37784684-37785100(-)$1	1	26	51	9.2172
))))))))((((....))))((((.	chr20:5986972-5987288(+)$1	1	109	134	11.6153
(.(((((.((((....)))))))))	chr22:21212832-21213156(-)$1	1	179	204	11.8615
(((((.((((......)))).))).	chr2:11484151-11484474(-)$1	1	149	174	9.3021
((((.(((((((....))).)))).	chr4:520777-521058(+)$1	1	152	177	9.6625
(((.((((((((....)))).))))	chr1:248020655-248020940(+)$1	1	41	66	11.6985
.(((((((((((....)))))))))	chr17:80789598-80789920(+)$1	1	154	179	8.9788
((((..(.((((....)))))))))	chr8:145149889-145150126(+)$1	1	106	131	12.0988
))))))))((((....))))(((((	chr11:108093067-108093362(-)$1	1	204	229	12.1995
)(((((((((((....))))))).)	chr2:97482543-97482864(+)$1	1	93	118	8.7468
((.(.((.((((....)))))).).	chr6:31371352-31371637(+)$1	1	245	270	12.0883
((..((.(((((....)))))))))	chr7:6071033-6071337(-)$1	1	219	244	8.8500
..((((..((((....))))..)))	chr19:8550707-8551005(+)$1	1	235	260	10.8736
(..(((((((((....)))).....	chr19:8550939-8551217(+)$1	1	32	57	10.4055
.))(((((((((....)))))))))	chr1:245025909-245026178(-)$1	1	80	105	8.5326
(.((((.(((((....)))))))))	chr19:55897973-55898227(+)$1	1	189	214	9.5120
.((.((((((((....)))).....	chr7:6075407-6075693(-)$1	1	82	107	9.8607
(.((((..((((....)))))))).	chr9:140446425-140446710(+)$1	1	49	74	12.6246
(((.((((.((((...)))))))).	chr17:29622238-29622497(+)$1	1	25	50	9.1832
(..((((.((((....)))).).))	chr19:8551122-8551339(+)$1	1	9	34	13.3509
..(((..(((((....)))))))).	chr2:10583515-10583729(-)$1	1	164	189	10.1868
...((((.((((....)))))))))	chr3:99567351-99567606(+)$1	1	194	219	12.4307
((((((..((((...))))..))))	chr5:137089641-137089900(-)$1	1	115	140	9.1960
(..((((.((((....)))))))).	chr16:777314-777622(+)$1	1	89	114	12.4313
((.(((((((.(....).))))...	chr17:80866136-80866390(+)$1	1	46	71	10.2743
(((.(.(.((((....)))).).).	chr16:2059503-2059750(-)$1	1	12	37	13.6789

#PSSM
d : 0.17	c : 0.15	f : 0.13	e : 0.09	! : 0.07	[ : 0.05	g : 0.05	h : 0.03	" : 0.03	: : 0.03	a : 0.01	l : 0.01	F : 0.01	C : 0.01	= : 0.01	] : 0.01	b : 0.01	
d : 0.15	! : 0.15	f : 0.13	c : 0.09	e : 0.07	[ : 0.07	: : 0.05	g : 0.05	b : 0.05	" : 0.03	= : 0.03	h : 0.01	a : 0.01	F : 0.01	
c : 0.19	d : 0.17	[ : 0.11	! : 0.09	f : 0.09	e : 0.07	g : 0.05	b : 0.05	" : 0.03	= : 0.03	: : 0.01	h : 0.01	F : 0.01	
d : 0.19	c : 0.17	e : 0.11	[ : 0.09	f : 0.09	! : 0.07	a : 0.07	g : 0.05	= : 0.03	$ : 0.01	b : 0.01	F : 0.01	i : 0.01	
d : 0.24	c : 0.15	[ : 0.13	e : 0.09	! : 0.07	a : 0.05	g : 0.05	f : 0.05	b : 0.03	= : 0.03	$ : 0.01	i : 0.01	
d : 0.23	g : 0.13	e : 0.09	c : 0.09	[ : 0.09	b : 0.07	" : 0.05	! : 0.05	f : 0.05	= : 0.03	$ : 0.01	# : 0.01	i : 0.01	
d : 0.19	g : 0.13	! : 0.13	e : 0.09	a : 0.09	b : 0.07	" : 0.05	c : 0.05	= : 0.03	[ : 0.03	$ : 0.01	# : 0.01	f : 0.01	i : 0.01	
[ : 0.24	! : 0.13	e : 0.13	d : 0.13	g : 0.09	" : 0.05	c : 0.05	= : 0.03	b : 0.01	$ : 0.01	# : 0.01	: : 0.01	i : 0.01	
d : 0.67	g : 0.09	e : 0.07	! : 0.03	[ : 0.03	c : 0.01	# : 0.01	= : 0.01	i : 0.01	
d : 0.69	c : 0.09	g : 0.09	e : 0.07	= : 0.01	i : 0.01	
d : 0.65	c : 0.09	g : 0.09	e : 0.07	o : 0.01	= : 0.01	i : 0.01	[ : 0.01	
d : 0.65	g : 0.09	c : 0.07	e : 0.07	m : 0.01	o : 0.01	= : 0.01	i : 0.01	a : 0.01	
m : 0.86	l : 0.07	d : 0.03	o : 0.01	
m : 0.86	l : 0.11	o : 0.01	
m : 0.86	l : 0.11	o : 0.01	
m : 0.84	d : 0.07	l : 0.03	c : 0.01	o : 0.01	
d : 0.67	c : 0.09	g : 0.09	e : 0.07	= : 0.01	i : 0.01	a : 0.01	
d : 0.67	c : 0.09	g : 0.09	e : 0.07	= : 0.01	i : 0.01	] : 0.01	
d : 0.69	g : 0.09	c : 0.07	e : 0.07	] : 0.01	= : 0.01	i : 0.01	
d : 0.61	2 : 0.09	g : 0.09	e : 0.07	] : 0.05	c : 0.01	= : 0.01	i : 0.01	
2 : 0.19	] : 0.17	d : 0.15	e : 0.13	g : 0.09	6 : 0.05	b : 0.05	= : 0.03	c : 0.01	h : 0.01	3 : 0.01	a : 0.01	i : 0.01	
d : 0.21	g : 0.13	b : 0.09	c : 0.09	2 : 0.09	e : 0.07	a : 0.07	6 : 0.05	f : 0.05	= : 0.03	h : 0.01	3 : 0.01	i : 0.01	
d : 0.24	g : 0.13	] : 0.13	c : 0.13	e : 0.07	6 : 0.05	f : 0.05	b : 0.03	= : 0.03	h : 0.01	3 : 0.01	i : 0.01	4 : 0.01	
d : 0.26	c : 0.17	a : 0.15	e : 0.07	6 : 0.05	f : 0.05	3 : 0.03	g : 0.03	= : 0.03	h : 0.01	b : 0.01	] : 0.01	i : 0.01	4 : 0.01	
] : 0.21	d : 0.17	c : 0.09	e : 0.07	g : 0.07	3 : 0.05	6 : 0.05	2 : 0.05	f : 0.05	= : 0.03	h : 0.01	b : 0.01	[ : 0.01	i : 0.01	4 : 0.01	

#score	555.8617044472851
#seq	52
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF693EMF_SMNDC1_transcript_m2_run2.txt

#BEAR
$dddd[bb[cccooooooccc]bb]ddd	chr14:95999699-95999910(-)$1	211	8	36	12.6801
idddd"""ddddoooooodddd333ddd	chr2:234197339-234197548(+)$1	209	101	129	20.3439
ddddddd[ddddnnnnndddddddd]dd	chr6:74228494-74228726(-)$1	232	20	48	12.8958
[dddd"""ddddmmmmdddd]ddddddd	chr11:62609093-62609310(-)$1	217	144	172	14.2565
::dddd!!ddddoooooodddd22dddd	chr7:98479293-98479497(+)$1	204	122	150	17.5918
:::dddd[ddddoooooodddddddd:f	chr7:98479339-98479556(+)$1	217	116	144	14.1280
""dddd!!bboooooobbdddd4444ff	chr17:33900574-33900814(+)$1	240	136	164	12.5714
eeeee"""ddddoooooodddd333eee	chr2:234197404-234197611(+)$1	207	36	64	18.4262
!!dddd[ccc[aooooooa]cccdddd]	chr2:234197369-234197587(+)$1	218	184	212	13.4085
dddddd[cccooooooccc]dddd]ddd	chr16:75273712-75273969(-)$1	257	93	121	12.0158
=dddd[a[cccddddllldddd333ccc	chr3:160232793-160233035(-)$1	242	138	166	13.2067
idddd"""ddddoooooodddd333ddd	chr2:234197322-234197539(+)$1	217	118	146	20.3439
gggggg!!ddddoooooodddd]ggggg	chr3:42662766-42663028(+)$1	262	120	148	15.6563
ff:dddd[ddddoooooodddddddd:f	chr7:98479382-98479597(+)$1	215	73	101	15.3118
[dddd"""ddddmmmmdddd]ddddddd	chr11:62609011-62609212(-)$1	201	46	74	14.2565
idddd"""ddddoooooodddd333ddd	chr2:234197291-234197510(+)$1	219	149	177	20.3439
eeee$$$$$cccooooooccc4444eee	chr1:173835343-173835604(-)$1	261	124	152	13.2353
bbbb[cccddddoooooodddd]ccc]b	chr17:38183757-38183968(-)$1	211	176	204	13.6225
:::dddd[ddddoooooodddddddd:f	chr7:98479369-98479571(+)$1	202	86	114	14.1280
=dddd[a[cccddddllldddd333ccc	chr3:160232787-160232993(-)$1	206	96	124	13.2067
[dddd"""ddddoooooodddd22dddd	chr2:234184495-234184724(+)$1	229	29	57	20.1764
ddd[eeeeecccooooooccc4444eee	chr15:25333703-25333951(+)$1	248	39	67	12.7191
[dddd"""ddddoooooodddd22dddd	chr2:234184368-234184594(+)$1	226	156	184	20.1764
:::dddd[ddddoooooodddddddd:f	chr7:98479371-98479576(+)$1	205	84	112	14.1280
[dddd"""ddddoooooodddd22dddd	chr2:234184430-234184638(+)$1	208	94	122	20.1764
idddd"""ddddoooooodddd333ddd	chr2:234197348-234197558(+)$1	210	92	120	20.3439
:::dddd[ddddoooooodddddddd:f	chr7:98479397-98479600(+)$1	203	58	86	14.1280
eeccc####ddddmmmmdddd4444ccc	chr4:1804782-1805022(+)$1	240	32	60	11.8632
[dddd"""ddddmmmmdddd]ddddddd	chr11:62609115-62609320(-)$1	205	154	182	14.2565
[dddd"""ddddmmmmdddd]ddddddd	chr6:89773189-89773437(-)$1	248	143	171	14.2565
:eeeee!!ddddooooooddddeeeee:	chr2:101889307-101889531(-)$1	224	157	185	14.5597
f!!dddd!!cccooooooccc4444ddd	chr2:101889383-101889605(-)$1	222	44	72	14.9880
idddd"""ddddoooooodddd333ddd	chr2:234197274-234197491(+)$1	217	166	194	20.3439
[dddd"""ddddoooooodddd22dddd	chr2:234184477-234184680(+)$1	203	47	75	20.1764
ff:dddd[ddddoooooodddddddd:F	chr7:98479317-98479529(+)$1	212	138	166	15.0054
ff:dddd[ddddoooooodddddddd:f	chr7:98479400-98479604(+)$1	204	55	83	15.3118
Feeeee"""cccooooooccc333eeee	chr16:21653355-21653588(+)$1	233	88	116	14.0623
[dddd"""ddddoooooodddd22dddd	chr2:234184394-234184601(+)$1	207	130	158	20.1764
=dddd[a[cccddddllldddd333ccc	chr3:160232764-160232987(-)$1	223	90	118	13.2067
:eeeee!!ddddooooooddddeeeee:	chr13:46948522-46948821(-)$1	299	33	61	14.5597
::dddd!!ddddoooooodddd22dddd	chr7:98479272-98479493(+)$1	221	143	171	17.5918
======::ddddooooooddddgggggg	chr7:2677931-2678159(+)$1	228	68	96	12.8295
ff:dddd[ddddoooooodddddddd:d	chr7:98479329-98479534(+)$1	205	126	154	15.5760
[eeeee!!ddddoooooodddd22eeee	chr4:53578773-53579013(+)$1	240	29	57	17.4809

#otherMatches

#Seq PSSM
AGCAUACUCCAGAGGAAGCUGAGGCAUG	chr14:95999699-95999910(-)$1	211	8	36	12.6801
GACACUCCGUGAUGUCCCUCAUUCUGUG	chr2:234197339-234197548(+)$1	209	101	129	20.3439
UGUGCCAAUUUCUGGUUGGAAUGGUGAC	chr6:74228494-74228726(-)$1	232	20	48	12.8958
auggaauaggagcuugcuccguccacuc	chr11:62609093-62609310(-)$1	217	144	172	14.2565
GUCUGGGAGUACAAAUGGGUGCGACUGG	chr7:98479293-98479497(+)$1	204	122	150	17.5918
AGCUAUGUGCCUUCUAUUAGGCCAUGAC	chr7:98479339-98479556(+)$1	217	116	144	14.1280
UUGCCAUUGCUUCACUGUUGGCUUUGAC	chr17:33900574-33900814(+)$1	240	136	164	12.5714
GACACUCCGUGAUGUCCCUCAUUCUGUG	chr2:234197404-234197611(+)$1	207	36	64	18.4262
GUGGCUAUGAUCUGCCUUGUUCAAGCUG	chr2:234197369-234197587(+)$1	218	184	212	13.4085
CCCCCGGGGGAAGGCGUCUGUGGGAGGU	chr16:75273712-75273969(-)$1	257	93	121	12.0158
UGUGUGUGCUUGUGGUGGCUAUGGAAAG	chr3:160232793-160233035(-)$1	242	138	166	13.2067
GACACUCCGUGAUGUCCCUCAUUCUGUG	chr2:234197322-234197539(+)$1	217	118	146	20.3439
UGGAGACUGACAAAUUUGUGUUUUCUUC	chr3:42662766-42663028(+)$1	262	120	148	15.6563
AGCUAUGUGCCUUCUAUUAGGCCAUGAC	chr7:98479382-98479597(+)$1	215	73	101	15.3118
auggaauaggagcuugcuccguccacuc	chr11:62609011-62609212(-)$1	201	46	74	14.2565
GACACUCCGUGAUGUCCCUCAUUCUGUG	chr2:234197291-234197510(+)$1	219	149	177	20.3439
AGAUUUAAUCAUGAAGAGAUGUACUAUC	chr1:173835343-173835604(-)$1	261	124	152	13.2353
CCGAUCCCUGUCAACCCAGACACGGGCU	chr17:38183757-38183968(-)$1	211	176	204	13.6225
AGCUAUGUGCCUUCUAUUAGGCCAUGAC	chr7:98479369-98479571(+)$1	202	86	114	14.1280
UGUGUGUGCUUGUGGUGGCUAUGGAAAG	chr3:160232787-160232993(-)$1	206	96	124	13.2067
GUGUGUUUCUGAGAGUGAUCGGCUCACA	chr2:234184495-234184724(+)$1	229	29	57	20.1764
UGCACCUCCCAGGUAGCACUGGCAUGGA	chr15:25333703-25333951(+)$1	248	39	67	12.7191
GUGUGUUUCUGAGAGUGAUCGGCUCACA	chr2:234184368-234184594(+)$1	226	156	184	20.1764
AGCUAUGUGCCUUCUAUUAGGCCAUGAC	chr7:98479371-98479576(+)$1	205	84	112	14.1280
GUGUGUUUCUGAGAGUGAUCGGCUCACA	chr2:234184430-234184638(+)$1	208	94	122	20.1764
GACACUCCGUGAUGUCCCUCAUUCUGUG	chr2:234197348-234197558(+)$1	210	92	120	20.3439
AGCUAUGUGCCUUCUAUUAGGCCAUGAC	chr7:98479397-98479600(+)$1	203	58	86	14.1280
CCGGCACAAGAGCUCCAGCUCCAAGGCC	chr4:1804782-1805022(+)$1	240	32	60	11.8632
auggaauaggagcuugcuccguccacuc	chr11:62609115-62609320(-)$1	205	154	182	14.2565
auggaauaggagcaugcuccauccacuc	chr6:89773189-89773437(-)$1	248	143	171	14.2565
AUGGGAGCUGUCAAGAAAGGCAUCCCAA	chr2:101889307-101889531(-)$1	224	157	185	14.5597
UUAGGGAUCCUGAACACACAGCCUUUCC	chr2:101889383-101889605(-)$1	222	44	72	14.9880
GACACUCCGUGAUGUCCCUCAUUCUGUG	chr2:234197274-234197491(+)$1	217	166	194	20.3439
GUGUGUUUCUGAGAGUGAUCGGCUCACA	chr2:234184477-234184680(+)$1	203	47	75	20.1764
AGCUAUGUGCCUUCUAUUAGGCCAUGAC	chr7:98479317-98479529(+)$1	212	138	166	15.0054
AGCUAUGUGCCUUCUAUUAGGCCAUGAC	chr7:98479400-98479604(+)$1	204	55	83	15.3118
aggaugacacacaaguucgugaagcguu	chr16:21653355-21653588(+)$1	233	88	116	14.0623
GUGUGUUUCUGAGAGUGAUCGGCUCACA	chr2:234184394-234184601(+)$1	207	130	158	20.1764
UGUGUGUGCUUGUGGUGGCUAUGGAAAG	chr3:160232764-160232987(-)$1	223	90	118	13.2067
ugaucugauuuagguuuauaaaagaucu	chr13:46948522-46948821(-)$1	299	33	61	14.5597
GUCUGGGAGUACAAAUGGGUGCGACUGG	chr7:98479272-98479493(+)$1	221	143	171	17.5918
GGCGUGGGCAGCGGGAGAGCUGGGGUCC	chr7:2677931-2678159(+)$1	228	68	96	12.8295
AGCUAUGUGCCUUCUAUUAGGCCAUGAC	chr7:98479329-98479534(+)$1	205	126	154	15.5760
CCCGCCUCGAGCUCCUCUGCUCCCGGCG	chr4:53578773-53579013(+)$1	240	29	57	17.4809

#DB
.((((.((.(((......))).)).)))	chr14:95999699-95999910(-)$1	1	8	36	12.6801
)((((...((((......))))...)))	chr2:234197339-234197548(+)$1	1	101	129	20.3439
(((((((.((((.....)))))))).))	chr6:74228494-74228726(-)$1	1	20	48	12.8958
.((((...((((....)))).)))))))	chr11:62609093-62609310(-)$1	1	144	172	14.2565
..((((..((((......))))..))))	chr7:98479293-98479497(+)$1	1	122	150	17.5918
...((((.((((......)))))))).(	chr7:98479339-98479556(+)$1	1	116	144	14.1280
..((((..((......))))))....))	chr17:33900574-33900814(+)$1	1	136	164	12.5714
(((((...((((......))))...)))	chr2:234197404-234197611(+)$1	1	36	64	18.4262
..((((.(((.(......).))))))).	chr2:234197369-234197587(+)$1	1	184	212	13.4085
((((((.(((......))).)))).)))	chr16:75273712-75273969(-)$1	1	93	121	12.0158
)((((.(.(((((((...))))...)))	chr3:160232793-160233035(-)$1	1	138	166	13.2067
)((((...((((......))))...)))	chr2:234197322-234197539(+)$1	1	118	146	20.3439
((((((..((((......)))).)))))	chr3:42662766-42663028(+)$1	1	120	148	15.6563
)).((((.((((......)))))))).(	chr7:98479382-98479597(+)$1	1	73	101	15.3118
.((((...((((....)))).)))))))	chr11:62609011-62609212(-)$1	1	46	74	14.2565
)((((...((((......))))...)))	chr2:234197291-234197510(+)$1	1	149	177	20.3439
((((.....(((......)))....)))	chr1:173835343-173835604(-)$1	1	124	152	13.2353
))((.(((((((......)))).))).)	chr17:38183757-38183968(-)$1	1	176	204	13.6225
...((((.((((......)))))))).(	chr7:98479369-98479571(+)$1	1	86	114	14.1280
)((((.(.(((((((...))))...)))	chr3:160232787-160232993(-)$1	1	96	124	13.2067
.((((...((((......))))..))))	chr2:234184495-234184724(+)$1	1	29	57	20.1764
(((.((((((((......)))....)))	chr15:25333703-25333951(+)$1	1	39	67	12.7191
.((((...((((......))))..))))	chr2:234184368-234184594(+)$1	1	156	184	20.1764
...((((.((((......)))))))).(	chr7:98479371-98479576(+)$1	1	84	112	14.1280
.((((...((((......))))..))))	chr2:234184430-234184638(+)$1	1	94	122	20.1764
)((((...((((......))))...)))	chr2:234197348-234197558(+)$1	1	92	120	20.3439
...((((.((((......)))))))).(	chr7:98479397-98479600(+)$1	1	58	86	14.1280
(((((....((((....))))....)))	chr4:1804782-1805022(+)$1	1	32	60	11.8632
.((((...((((....)))).)))))))	chr11:62609115-62609320(-)$1	1	154	182	14.2565
.((((...((((....)))).)))))))	chr6:89773189-89773437(-)$1	1	143	171	14.2565
.(((((..((((......))))))))).	chr2:101889307-101889531(-)$1	1	157	185	14.5597
(..((((..(((......)))....)))	chr2:101889383-101889605(-)$1	1	44	72	14.9880
)((((...((((......))))...)))	chr2:234197274-234197491(+)$1	1	166	194	20.3439
.((((...((((......))))..))))	chr2:234184477-234184680(+)$1	1	47	75	20.1764
)).((((.((((......)))))))).)	chr7:98479317-98479529(+)$1	1	138	166	15.0054
)).((((.((((......)))))))).(	chr7:98479400-98479604(+)$1	1	55	83	15.3118
((((((...(((......)))...))))	chr16:21653355-21653588(+)$1	1	88	116	14.0623
.((((...((((......))))..))))	chr2:234184394-234184601(+)$1	1	130	158	20.1764
)((((.(.(((((((...))))...)))	chr3:160232764-160232987(-)$1	1	90	118	13.2067
.(((((..((((......))))))))).	chr13:46948522-46948821(-)$1	1	33	61	14.5597
..((((..((((......))))..))))	chr7:98479272-98479493(+)$1	1	143	171	17.5918
))))))..((((......))))((((((	chr7:2677931-2678159(+)$1	1	68	96	12.8295
)).((((.((((......)))))))).(	chr7:98479329-98479534(+)$1	1	126	154	15.5760
.(((((..((((......))))..))))	chr4:53578773-53579013(+)$1	1	29	57	17.4809

#PSSM
[ : 0.22	: : 0.18	i : 0.11	f : 0.11	= : 0.09	d : 0.06	e : 0.06	$ : 0.02	" : 0.02	! : 0.02	g : 0.02	b : 0.02	F : 0.02	
d : 0.47	e : 0.15	: : 0.13	f : 0.09	! : 0.04	" : 0.02	g : 0.02	b : 0.02	= : 0.02	
d : 0.56	: : 0.18	e : 0.13	g : 0.02	b : 0.02	c : 0.02	! : 0.02	= : 0.02	
d : 0.74	e : 0.13	g : 0.02	b : 0.02	[ : 0.02	c : 0.02	= : 0.02	
d : 0.74	e : 0.13	g : 0.02	$ : 0.02	[ : 0.02	c : 0.02	= : 0.02	
" : 0.34	d : 0.34	e : 0.11	[ : 0.09	g : 0.02	$ : 0.02	c : 0.02	# : 0.02	= : 0.02	
" : 0.36	d : 0.22	! : 0.15	a : 0.06	[ : 0.04	b : 0.02	$ : 0.02	c : 0.02	e : 0.02	# : 0.02	: : 0.02	
" : 0.36	[ : 0.27	! : 0.18	c : 0.06	b : 0.02	$ : 0.02	e : 0.02	# : 0.02	: : 0.02	
d : 0.72	c : 0.11	[ : 0.02	b : 0.02	$ : 0.02	e : 0.02	# : 0.02	! : 0.02	" : 0.02	
d : 0.74	c : 0.22	b : 0.02	
d : 0.74	c : 0.18	o : 0.04	[ : 0.02	
d : 0.81	c : 0.11	o : 0.04	a : 0.02	
o : 0.79	m : 0.09	d : 0.09	n : 0.02	
o : 0.79	m : 0.11	d : 0.06	n : 0.02	
o : 0.79	m : 0.11	d : 0.06	n : 0.02	
o : 0.79	m : 0.11	l : 0.06	n : 0.02	
o : 0.74	d : 0.09	l : 0.06	n : 0.02	b : 0.02	c : 0.02	m : 0.02	
o : 0.74	d : 0.13	l : 0.06	b : 0.02	c : 0.02	
d : 0.84	c : 0.13	a : 0.02	
d : 0.84	c : 0.11	] : 0.04	
d : 0.77	c : 0.13	] : 0.09	
d : 0.84	4 : 0.09	] : 0.02	c : 0.02	3 : 0.02	
d : 0.31	3 : 0.22	2 : 0.18	4 : 0.11	] : 0.04	e : 0.04	b : 0.02	c : 0.02	g : 0.02	
d : 0.34	3 : 0.22	2 : 0.18	4 : 0.11	g : 0.04	e : 0.04	b : 0.02	c : 0.02	
d : 0.47	3 : 0.20	4 : 0.11	e : 0.09	] : 0.04	g : 0.04	c : 0.02	
d : 0.63	e : 0.15	c : 0.11	g : 0.04	] : 0.02	4 : 0.02	
d : 0.47	: : 0.18	e : 0.15	c : 0.09	g : 0.04	f : 0.02	] : 0.02	
d : 0.47	f : 0.15	e : 0.11	c : 0.09	g : 0.04	: : 0.04	] : 0.02	b : 0.02	F : 0.02	

#score	689.724741819059
#seq	44
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF121XLA_HNRNPA1_UTR_m3_run2.txt

#BEAR
!!bb[ddddoooooodddd]bb333ffffff7777777ff	chr3:30734709-30734974(+)$1	265	170	210	32.6867
$$eeeee####ddddllldddd4444eeeee666666ggg	chr7:26230121-26230402(-)$1	281	39	79	31.4789

#otherMatches

#Seq PSSM
UAAUCAACAAAGAAGUGUUAAUGCUGCAAGUAAUCUCUUU	chr3:30734709-30734974(+)$1	265	170	210	32.6867
AAGCCUGGUAUGUAUCCAGUACUAAAUAGGUGGGUUAAAU	chr7:26230121-26230402(-)$1	281	39	79	31.4789

#DB
..((.((((......)))).))...)))))).......))	chr3:30734709-30734974(+)$1	1	170	210	32.6867
..(((((....((((...))))....)))))......)))	chr7:26230121-26230402(-)$1	1	39	79	31.4789

#PSSM
! : 0.50	$ : 0.50	
! : 0.50	$ : 0.50	
b : 0.50	e : 0.50	
b : 0.50	e : 0.50	
[ : 0.50	e : 0.50	
d : 0.50	e : 0.50	
d : 0.50	e : 0.50	
d : 0.50	# : 0.50	
d : 0.50	# : 0.50	
o : 0.50	# : 0.50	
o : 0.50	# : 0.50	
o : 0.50	d : 0.50	
o : 0.50	d : 0.50	
o : 0.50	d : 0.50	
o : 0.50	d : 0.50	
d : 0.50	l : 0.50	
d : 0.50	l : 0.50	
d : 0.50	l : 0.50	
d : 1.00	
] : 0.50	d : 0.50	
b : 0.50	d : 0.50	
b : 0.50	d : 0.50	
3 : 0.50	4 : 0.50	
3 : 0.50	4 : 0.50	
3 : 0.50	4 : 0.50	
f : 0.50	4 : 0.50	
f : 0.50	e : 0.50	
f : 0.50	e : 0.50	
f : 0.50	e : 0.50	
f : 0.50	e : 0.50	
f : 0.50	e : 0.50	
7 : 0.50	6 : 0.50	
7 : 0.50	6 : 0.50	
7 : 0.50	6 : 0.50	
7 : 0.50	6 : 0.50	
7 : 0.50	6 : 0.50	
7 : 0.50	6 : 0.50	
7 : 0.50	g : 0.50	
f : 0.50	g : 0.50	
f : 0.50	g : 0.50	

#score	64.16574048614999
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF713QGM_GRWD1_UTR_m3_run1.txt

#BEAR
ffff"""ddddmmmmdddd22ffffff]	chr10:121336541-121336815(-)$1	274	43	71	12.1281
b[ccc!!ddddllldddd22ccc]bb]c	chr16:70588928-70589187(+)$1	259	202	230	10.4812
fffff!!ddddmmmmdddd333ffffff	chr5:140019303-140019545(+)$1	242	159	187	12.0372
bdddd"""cccmmmmccc]dddd22bb:	chr5:137497385-137497598(-)$1	213	24	52	8.9843
(dddd!!ddddmmmmdddd]dddd]eee	chr7:102995215-102995498(+)$1	283	238	266	11.5993
[ccc"""ddddmmmmdddd666666ccc	chr1:31538361-31538586(-)$1	225	16	44	11.9801
!!ccc!!ddddmmmmdddd22ccc]ddd	chr2:96950967-96951177(-)$1	210	10	38	13.6258
"ccc"""ddddmmmmddddccc333bb]	chr17:65714054-65714307(+)$1	253	206	234	14.1554
[ddddccccccmmmmccc]ccc]ddddc	chr8:41469605-41469873(+)$1	268	237	265	10.0829
ddd$$$$$ddddllldddd4444dddde	chr14:21967082-21967310(-)$1	228	112	140	9.8495
####gggggggmmmmgggggggeeeee2	chr15:57383885-57384192(+)$1	307	24	52	9.4851
e[bb"""ddddllldddd333bb]eeee	chr19:16513181-16513397(-)$1	216	18	46	10.7076
eeee"""ddddmmmmddddeeeee]bb]	chr17:79213056-79213304(+)$1	248	12	40	12.4338
!!iiiiiiiiimmmmiiiiiiiii22dd	chr17:1437289-1437602(-)$1	313	25	53	10.1273
bb$$$$$ddddmmmmdddd4444bbggg	chr1:24975306-24975610(+)$1	304	52	80	12.1089
eeee"""ccclllccceeeee4444bb]	chr14:35002606-35002844(-)$1	238	91	119	8.5175
!!a[bb[ddddllldddd]bb]a22ccc	chr5:75991363-75991586(+)$1	223	102	130	9.7168
[ccc!!eeeeemmmmeeeee4444ccc]	chr3:49170289-49170536(-)$1	247	42	70	12.8277
####dddd[bbmmmmbbdddd333dddd	chr19:45560931-45561188(+)$1	257	210	238	10.2001
[bb"""bbcccmmmmccc]bb]bb]a]c	chr2:208439970-208440279(+)$1	309	145	173	9.4617
=!!ccc[ddddmmmmddddccc======	chr17:48828064-48828292(+)$1	228	128	156	13.0138
"dddd!!ddddmmmmdddd4444dddd2	chr16:89804888-89805105(-)$1	217	165	193	13.4486
b[iiiiiiiiimmmmiiiiiiiii333b	chr17:62498236-62498442(-)$1	206	163	191	9.8791
!eeeee[ddddmmmmddddeeeee22dd	chr7:23390827-23391087(-)$1	260	194	222	11.4093
ee[ccc[ddddmmmmddddccc]eeeee	chr1:156169535-156169932(+)$1	397	270	298	11.9574
eeee!!eeeeemmmmeeeeeeeeee22c	chr22:29932514-29932812(-)$1	298	197	225	10.3989
c"""gggggggmmmmggggggg]ccccc	chr15:40849316-40849656(-)$1	340	68	96	9.8800
ggg[addddbbmmmmbb]dddd]a]ggg	chr6:136600877-136601115(-)$1	238	80	108	9.4667
bb####a!!cccmmmmccc22a333bb]	chr8:48955496-48955840(+)$1	344	125	153	9.4738
ffff[dddd[ammmmadddd]ffffff3	chr12:6638849-6639086(+)$1	237	178	206	9.7893
gggggg!!cccmmmmccc4444gggggg	chr12:125451237-125451520(-)$1	283	206	234	10.8958
[ccc!!bbcccmmmmccc333bb22ccc	chr19:5713091-5713320(-)$1	229	151	179	11.0372
b[ccc[eeeeemmmmeeeeeccc]bb]c	chr19:5641707-5642007(+)$1	300	117	145	10.9026
iii[bb[ddddmmmmdddd22bb]iiii	chr12:42631295-42631622(-)$1	327	265	293	11.7526
:ccc[a[ddddmmmmdddd]a]ccc:ff	chr16:70363676-70363969(+)$1	293	33	61	10.8439
[a[ccc[ddddllldddd]ccc]abb22	chr11:720496-720700(+)$1	204	101	129	10.0323
""ccc[eeeeellleeeeeccc4444cc	chr2:61169342-61169602(-)$1	260	131	159	10.2378
i[a!!ddddbbmmmmbb]dddd22a]ii	chr10:25010649-25010938(-)$1	289	215	243	9.6930
:dddd!!ddddnnnnndddd4444dddd	chr14:32068391-32068662(+)$1	271	148	176	9.0583
"""bb[eeeeemmmmeeeee]bb4444d	chr7:100479718-100479965(+)$1	247	140	168	11.2350
ee[a"""ddddmmmmdddd]a]eeeee3	chr1:1687844-1688165(-)$1	321	115	143	13.0870
eeee!!eeeeemmmmeeeeeeeeee]a]	chr11:65293534-65293806(+)$1	272	197	225	10.6668
dd####eeeeemmmmeeeee]dddd22c	chr12:76844580-76844866(-)$1	286	122	150	10.9258
[ccc[ccc[bbmmmmbb]cccccc]a]g	chr17:8157440-8157669(+)$1	229	38	66	9.5428
d[dddd[ddddmmmmdddd]dddd]ddd	chr5:134131692-134131940(+)$1	248	93	121	11.6935
##dddd[ddddmmmmdddd22dddd22i	chr16:1421396-1421706(-)$1	310	252	280	11.8150
bdddd!!ddddnnnnndddd4444dddd	chr11:64536415-64536640(-)$1	225	21	49	9.7428
iiii!!eeeeemmmmeeeeeiiiiiiii	chr1:38423637-38423896(-)$1	259	157	185	11.4587
[a[eeeee!!ammmma22eeeeea]ccc	chr19:8550812-8551074(+)$1	262	100	128	9.2702
"""bb[eeeeemmmmeeeeebbcccddd	chr1:35658535-35658817(-)$1	282	167	195	10.5155
dddd!!eeeeemmmmeeeee4444dddd	chr11:73598296-73598599(+)$1	303	155	183	11.9192
[ccc"""cccmmmmccc22ccc]dddd3	chr16:4910600-4910916(+)$1	316	204	232	9.7734
ccc####ddddllldddd333ccc:hhh	chr18:9549172-9549431(-)$1	259	10	38	10.3177
dddd"""ddddmmmmdddd4444dddd:	chr11:6559740-6560113(+)$1	373	218	246	12.7852
$$$bb[eeeeemmmmeeeee]bb4444c	chr3:14199584-14199889(-)$1	305	137	165	10.6500

#otherMatches

#Seq PSSM
UAUUGUGUUAGGUUCUUAAAAAAUAAAA	chr10:121336541-121336815(-)$1	274	43	71	12.1281
UGUGGGACUUAUUGUAGGGACCAGAGGG	chr16:70588928-70589187(+)$1	259	202	230	10.4812
GAGUCCACGCCCGCUGGCGCCAGACUCC	chr5:140019303-140019545(+)$1	242	159	187	12.0372
CACCUUAUUCCUUUUGGACAGGUAUGCC	chr5:137497385-137497598(-)$1	213	24	52	8.9843
AGAGUUUAAAUACAGAUUUUACUCCUUC	chr7:102995215-102995498(+)$1	283	238	266	11.5993
GUCCCCAGUGGGCCGCCAUGUUGUCGGA	chr1:31538361-31538586(-)$1	225	16	44	11.9801
UUGUCCUUUGUUUUGACAAUUGAUCCAU	chr2:96950967-96951177(-)$1	210	10	38	13.6258
GGAGCUCGAGCUCAAGUUUCUCACAGCU	chr17:65714054-65714307(+)$1	253	206	234	14.1554
UGGUCAGGGCUAGGAGGCUCCUGGACCC	chr8:41469605-41469873(+)$1	268	237	265	10.0829
UGGACGACCACACAAUGUGCAACCCAAC	chr14:21967082-21967310(-)$1	228	112	140	9.8495
UAGGUGAGUGUCAUUAUGCUCAAUUAGC	chr15:57383885-57384192(+)$1	307	24	52	9.4851
cccuguguuuuaaaaaaaaaaaGCGUCU	chr19:16513181-16513397(-)$1	216	18	46	10.7076
GGUUAUGGGCGGAAGCGCCGACCUAUCA	chr17:79213056-79213304(+)$1	248	12	40	12.4338
AGAAGGGCUGUGGCAGCAGCCUUUGCCU	chr17:1437289-1437602(-)$1	313	25	53	10.1273
UCCAAAAUGAUGCAAAUCAACCUGACUG	chr1:24975306-24975610(+)$1	304	52	80	12.1089
UUGAAUAGGAUCUUCCUCAGGAAAUGGA	chr14:35002606-35002844(-)$1	238	91	119	8.5175
AAGACAUUCUCAAUGAGAUUGCCAAGGU	chr5:75991363-75991586(+)$1	223	102	130	9.7168
UUCCCAACUUUGCUCAAAGUCGCUGGAC	chr3:49170289-49170536(-)$1	247	42	70	12.8277
UCAUCCCCGACAUCGGUGGGGUCCCCUC	chr19:45560931-45561188(+)$1	257	210	238	10.2001
AGUAUGCACAGACCACUGAUGGACAGCA	chr2:208439970-208440279(+)$1	309	145	173	9.4617
AGUCCUGCAAAACAUUUUGAGGUACAUU	chr17:48828064-48828292(+)$1	228	128	156	13.0138
CUUGUUGCACUAAAAAGUGGAUUACAAA	chr16:89804888-89805105(-)$1	217	165	193	13.4486
GUAAAUAUUUCAAAUGAAGUAUUUUUCC	chr17:62498236-62498442(-)$1	206	163	191	9.8791
AUGAGAAUUCCCCUUGGAAUCUUAGUAA	chr7:23390827-23391087(-)$1	260	194	222	11.4093
GACCUUCGAUGCCUUCAUCAAGAUCCUG	chr1:156169535-156169932(+)$1	397	270	298	11.9574
CAGGUGGGGCCCUCUGGCCUUUUGCUUU	chr22:29932514-29932812(-)$1	298	197	225	10.3989
UCUACUUCUCUCUCUAGAGAAGAAGCUA	chr15:40849316-40849656(-)$1	340	68	96	9.8800
UUUGCCCUAUCAUUUGAUUAGGAGAAAA	chr6:136600877-136601115(-)$1	238	80	108	9.4667
UUGGAAGAACUUGAAGAAGGACAAAAAG	chr8:48955496-48955840(+)$1	344	125	153	9.4738
UGACUGUUUUGGAGACAAACUGUCAGAU	chr12:6638849-6639086(+)$1	237	178	206	9.7893
CCUGGAGAGUAAGGcugcguuguccagg	chr12:125451237-125451520(-)$1	283	206	234	10.8958
GCAUGAUCGUCAUGGGACACAGAAGGUG	chr19:5713091-5713320(-)$1	229	151	179	11.0372
AAUUGAUAAUGGAAGCGUUGCAGAUUGU	chr19:5641707-5642007(+)$1	300	117	145	10.9026
GCGACCAGAGGACGCCCUUGCGGCUGCC	chr12:42631295-42631622(-)$1	327	265	293	11.7526
ACCUACCAGGGCCUUCCCUUGCAGGAUG	chr16:70363676-70363969(+)$1	293	33	61	10.8439
AGGAGCUGGAAGACUUCCCGCUGCCCAC	chr11:720496-720700(+)$1	204	101	129	10.0323
GCACAUGCCGUAAAAUGGCUGUUUACCC	chr2:61169342-61169602(-)$1	260	131	159	10.2378
UGUGUCUUGAGCGUCCUGCAAGUUGGGG	chr10:25010649-25010938(-)$1	289	215	243	9.6930
GUUCCAAAGAUGAUGAAUCUGAAAGGAA	chr14:32068391-32068662(+)$1	271	148	176	9.0583
AGUGGUGAGUGCCCCUACUUCCCUGGAC	chr7:100479718-100479965(+)$1	247	140	168	11.2350
CAGGAGAACAUGAUCGUGUAUGUGGAAA	chr1:1687844-1688165(-)$1	321	115	143	13.0870
GGGACCUCCCCGCAAGGGGAUCCCCGAG	chr11:65293534-65293806(+)$1	272	197	225	10.6668
CUCAGCUUCUGACACCAGGAAAGAUGAG	chr12:76844580-76844866(-)$1	286	122	150	10.9258
UGCAGCUGAGGCCCUCCCCAGUGCUGAG	chr17:8157440-8157669(+)$1	229	38	66	9.5428
GGUCUUCUUAAGGAUUUAAUGAGAGCAU	chr5:134131692-134131940(+)$1	248	93	121	11.6935
aggaucgcuugagcccggggaggucaag	chr16:1421396-1421706(-)$1	310	252	280	11.8150
CUCUUUUUCCUUUAAUAGGAUCUUAAGA	chr11:64536415-64536640(-)$1	225	21	49	9.7428
AUGCAUCUUGUAGAAACAAGGCAUGCUG	chr1:38423637-38423896(-)$1	259	157	185	11.4587
CCGCAGGUAUGGGAGCUGGCCUGGAGCG	chr19:8550812-8551074(+)$1	262	100	128	9.2702
AUGUCUCGGGAUCGGUUCCGGAGUCgug	chr1:35658535-35658817(-)$1	282	167	195	10.5155
AUCCCAGAGGUUACAGCUUCAGAAGGAU	chr11:73598296-73598599(+)$1	303	155	183	11.9192
UCCCAUCAGCGGAAGCUCAGGGCCUGCG	chr16:4910600-4910916(+)$1	316	204	232	9.7734
GGUCACUCAGAGAUUUUGUUAGCCAGUA	chr18:9549172-9549431(-)$1	259	10	38	10.3177
GAGUUUCGCAGCUACCUGCCCCUGCUCA	chr11:6559740-6560113(+)$1	373	218	246	12.7852
GUGUAGACUGUGUGCACGGUGUGGUGGG	chr3:14199584-14199889(-)$1	305	137	165	10.6500

#DB
((((...((((....))))..)))))).	chr10:121336541-121336815(-)$1	1	43	71	12.1281
(.(((..((((...))))..))).)).)	chr16:70588928-70589187(+)$1	1	202	230	10.4812
(((((..((((....))))...))))))	chr5:140019303-140019545(+)$1	1	159	187	12.0372
(((((...(((....))).))))..)).	chr5:137497385-137497598(-)$1	1	24	52	8.9843
.((((..((((....)))).)))).)))	chr7:102995215-102995498(+)$1	1	238	266	11.5993
.(((...((((....))))......)))	chr1:31538361-31538586(-)$1	1	16	44	11.9801
..(((..((((....))))..))).)))	chr2:96950967-96951177(-)$1	1	10	38	13.6258
.(((...((((....)))))))...)).	chr17:65714054-65714307(+)$1	1	206	234	14.1554
.((((((((((....))).))).)))))	chr8:41469605-41469873(+)$1	1	237	265	10.0829
(((.....((((...))))....))))(	chr14:21967082-21967310(-)$1	1	112	140	9.8495
....(((((((....)))))))))))).	chr15:57383885-57384192(+)$1	1	24	52	9.4851
(.((...((((...))))...)).))))	chr19:16513181-16513397(-)$1	1	18	46	10.7076
((((...((((....))))))))).)).	chr17:79213056-79213304(+)$1	1	12	40	12.4338
..(((((((((....)))))))))..))	chr17:1437289-1437602(-)$1	1	25	53	10.1273
((.....((((....))))....)))))	chr1:24975306-24975610(+)$1	1	52	80	12.1089
((((...(((...))))))))....)).	chr14:35002606-35002844(-)$1	1	91	119	8.5175
..(.((.((((...)))).)).)..)))	chr5:75991363-75991586(+)$1	1	102	130	9.7168
.(((..(((((....)))))....))).	chr3:49170289-49170536(-)$1	1	42	70	12.8277
....((((.((....))))))...))))	chr19:45560931-45561188(+)$1	1	210	238	10.2001
.((...(((((....))).)).)).).)	chr2:208439970-208440279(+)$1	1	145	173	9.4617
(..(((.((((....)))))))))))))	chr17:48828064-48828292(+)$1	1	128	156	13.0138
.((((..((((....))))....)))).	chr16:89804888-89805105(-)$1	1	165	193	13.4486
(.(((((((((....)))))))))...)	chr17:62498236-62498442(-)$1	1	163	191	9.8791
.(((((.((((....)))))))))..))	chr7:23390827-23391087(-)$1	1	194	222	11.4093
((.(((.((((....))))))).)))))	chr1:156169535-156169932(+)$1	1	270	298	11.9574
((((..(((((....))))))))))..)	chr22:29932514-29932812(-)$1	1	197	225	10.3989
(...(((((((....))))))).)))))	chr15:40849316-40849656(-)$1	1	68	96	9.8800
(((.(((((((....)).)))).).)))	chr6:136600877-136601115(-)$1	1	80	108	9.4667
((....(..(((....)))..)...)).	chr8:48955496-48955840(+)$1	1	125	153	9.4738
((((.((((.(....))))).)))))).	chr12:6638849-6639086(+)$1	1	178	206	9.7893
((((((..(((....)))....))))))	chr12:125451237-125451520(-)$1	1	206	234	10.8958
.(((..(((((....)))...))..)))	chr19:5713091-5713320(-)$1	1	151	179	11.0372
(.(((.(((((....)))))))).)).)	chr19:5641707-5642007(+)$1	1	117	145	10.9026
(((.((.((((....))))..)).))))	chr12:42631295-42631622(-)$1	1	265	293	11.7526
.(((.(.((((....)))).).))).((	chr16:70363676-70363969(+)$1	1	33	61	10.8439
.(.(((.((((...)))).))).)))..	chr11:720496-720700(+)$1	1	101	129	10.0323
..(((.(((((...))))))))....))	chr2:61169342-61169602(-)$1	1	131	159	10.2378
(.(..((((((....)).))))..).))	chr10:25010649-25010938(-)$1	1	215	243	9.6930
.((((..((((.....))))....))))	chr14:32068391-32068662(+)$1	1	148	176	9.0583
...((.(((((....))))).))....)	chr7:100479718-100479965(+)$1	1	140	168	11.2350
((.(...((((....)))).).))))).	chr1:1687844-1688165(-)$1	1	115	143	13.0870
((((..(((((....)))))))))).).	chr11:65293534-65293806(+)$1	1	197	225	10.6668
((....(((((....))))).))))..)	chr12:76844580-76844866(-)$1	1	122	150	10.9258
.(((.(((.((....)).)))))).).)	chr17:8157440-8157669(+)$1	1	38	66	9.5428
(.((((.((((....)))).)))).)))	chr5:134131692-134131940(+)$1	1	93	121	11.6935
..((((.((((....))))..))))..)	chr16:1421396-1421706(-)$1	1	252	280	11.8150
(((((..((((.....))))....))))	chr11:64536415-64536640(-)$1	1	21	49	9.7428
((((..(((((....)))))))))))))	chr1:38423637-38423896(-)$1	1	157	185	11.4587
.(.(((((..(....)..)))))).)))	chr19:8550812-8551074(+)$1	1	100	128	9.2702
...((.(((((....)))))))))))))	chr1:35658535-35658817(-)$1	1	167	195	10.5155
((((..(((((....)))))....))))	chr11:73598296-73598599(+)$1	1	155	183	11.9192
.(((...(((....)))..))).)))).	chr16:4910600-4910916(+)$1	1	204	232	9.7734
(((....((((...))))...))).(((	chr18:9549172-9549431(-)$1	1	10	38	10.3177
((((...((((....))))....)))).	chr11:6559740-6560113(+)$1	1	218	246	12.7852
...((.(((((....))))).))....)	chr3:14199584-14199889(-)$1	1	137	165	10.6500

#PSSM
[ : 0.16	b : 0.12	e : 0.12	" : 0.09	d : 0.09	! : 0.07	f : 0.05	# : 0.05	i : 0.05	c : 0.03	g : 0.03	: : 0.03	( : 0.01	= : 0.01	$ : 0.01	
d : 0.18	c : 0.14	e : 0.12	[ : 0.10	! : 0.07	" : 0.07	f : 0.05	# : 0.05	b : 0.05	g : 0.03	i : 0.03	a : 0.03	$ : 0.01	
c : 0.21	d : 0.20	e : 0.09	# : 0.07	i : 0.07	[ : 0.07	f : 0.05	" : 0.05	b : 0.03	$ : 0.03	a : 0.03	g : 0.03	! : 0.01	
c : 0.25	d : 0.18	e : 0.10	# : 0.09	b : 0.07	f : 0.05	i : 0.05	[ : 0.05	$ : 0.03	" : 0.03	g : 0.01	! : 0.01	a : 0.01	
" : 0.18	d : 0.16	c : 0.12	! : 0.12	b : 0.09	g : 0.05	# : 0.05	[ : 0.05	$ : 0.03	i : 0.03	e : 0.03	f : 0.01	a : 0.01	
! : 0.23	" : 0.20	d : 0.10	c : 0.09	[ : 0.09	g : 0.05	# : 0.05	$ : 0.03	i : 0.03	b : 0.03	e : 0.03	a : 0.01	
e : 0.21	" : 0.18	[ : 0.16	! : 0.14	d : 0.07	c : 0.03	$ : 0.03	g : 0.03	i : 0.03	b : 0.03	a : 0.01	# : 0.01	
d : 0.52	e : 0.21	c : 0.07	g : 0.03	i : 0.03	b : 0.03	! : 0.03	" : 0.01	$ : 0.01	
d : 0.52	e : 0.20	c : 0.12	g : 0.03	i : 0.03	[ : 0.03	! : 0.03	
d : 0.47	e : 0.20	c : 0.14	b : 0.07	g : 0.03	i : 0.03	[ : 0.01	! : 0.01	
d : 0.47	e : 0.20	c : 0.10	b : 0.07	g : 0.03	i : 0.03	a : 0.03	l : 0.01	m : 0.01	
m : 0.80	l : 0.12	n : 0.03	d : 0.01	c : 0.01	
m : 0.81	l : 0.14	n : 0.03	
m : 0.81	l : 0.12	n : 0.03	c : 0.01	
m : 0.80	d : 0.09	c : 0.03	n : 0.03	l : 0.01	e : 0.01	
d : 0.43	e : 0.20	c : 0.12	b : 0.07	g : 0.03	i : 0.03	a : 0.03	n : 0.03	m : 0.01	
d : 0.49	e : 0.21	c : 0.12	b : 0.07	g : 0.03	i : 0.03	2 : 0.01	
d : 0.50	e : 0.21	c : 0.10	] : 0.05	g : 0.03	i : 0.03	2 : 0.03	
d : 0.45	e : 0.23	] : 0.09	3 : 0.05	2 : 0.03	g : 0.03	i : 0.03	c : 0.03	4 : 0.01	
e : 0.25	c : 0.14	d : 0.12	2 : 0.10	4 : 0.09	3 : 0.07	] : 0.07	g : 0.03	i : 0.03	b : 0.03	6 : 0.01	
c : 0.18	4 : 0.16	d : 0.10	e : 0.10	2 : 0.09	3 : 0.07	] : 0.07	i : 0.05	b : 0.05	g : 0.03	a : 0.03	6 : 0.01	
c : 0.21	4 : 0.18	d : 0.12	b : 0.10	e : 0.09	] : 0.07	i : 0.05	f : 0.03	3 : 0.03	g : 0.03	6 : 0.01	a : 0.01	
4 : 0.18	c : 0.12	e : 0.12	] : 0.10	b : 0.10	d : 0.09	f : 0.05	3 : 0.05	i : 0.05	6 : 0.01	a : 0.01	= : 0.01	g : 0.01	2 : 0.01	
d : 0.16	4 : 0.14	e : 0.12	c : 0.10	] : 0.07	2 : 0.07	f : 0.05	3 : 0.05	i : 0.05	a : 0.05	b : 0.03	6 : 0.01	= : 0.01	g : 0.01	
d : 0.20	] : 0.14	e : 0.10	2 : 0.09	b : 0.07	4 : 0.07	c : 0.07	f : 0.05	3 : 0.05	i : 0.03	6 : 0.01	= : 0.01	g : 0.01	a : 0.01	: : 0.01	
d : 0.21	b : 0.14	c : 0.10	e : 0.09	2 : 0.09	f : 0.05	g : 0.05	4 : 0.05	a : 0.03	i : 0.03	] : 0.03	= : 0.01	3 : 0.01	: : 0.01	h : 0.01	
d : 0.25	c : 0.12	b : 0.09	e : 0.09	f : 0.07	] : 0.07	2 : 0.07	g : 0.05	i : 0.05	4 : 0.03	= : 0.01	3 : 0.01	a : 0.01	h : 0.01	
c : 0.23	d : 0.18	] : 0.12	e : 0.07	g : 0.07	i : 0.07	2 : 0.05	3 : 0.05	f : 0.03	: : 0.03	= : 0.01	b : 0.01	h : 0.01	

#score	599.0823371892748
#seq	55
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF367VYJ_DDX42_transcript_m3_run1.txt

#BEAR
[ddddqqqqqqqqdddd]c	chr2:132038631-132038895(+)$1	264	240	259	13.5113
ddddssssssssssddddc	chr4:174254766-174255105(-)$1	339	306	325	6.6421
==[bbqqqqqqqqbb]===	chr6:43745783-43746080(+)$1	297	198	217	11.9547
eeeeeqqqqqqqqeeeeee	chr1:35647628-35647884(-)$1	256	129	148	14.0979
cc[bbqqqqqqqqbbccc]	chr4:100870965-100871245(-)$1	280	8	27	11.7622
[ddddqqqqqqqqdddd]b	chr3:100428670-100428988(+)$1	318	243	262	13.3607
$ddddqqqqqqqqdddd44	chr2:65496335-65496592(+)$1	257	67	86	13.1224
eeeeerrrrrrrrreeeee	chr6:32942491-32942749(+)$1	258	144	163	8.7136
fffffqqqqqqqqffffff	chrX:153627697-153627915(+)$1	218	129	148	12.6393
"ddddqqqqqqqqdddd]b	chr10:71929890-71930169(-)$1	279	258	277	13.2243
gggggqqqqqqqqgggggg	chr6:43746033-43746273(+)$1	240	126	145	12.6610
eeeeeqqqqqqqqeeeee5	chr16:2818320-2818551(+)$1	231	119	138	13.5588
eee[aqqqqqqqqaeeeee	chr17:73775409-73775671(-)$1	262	169	188	13.6590
eeeeepppppppeeeeecc	chrX:70761529-70761810(+)$1	281	184	203	6.0509
eeeeeqqqqqqqqeeeeeb	chr19:49122183-49122425(-)$1	242	186	205	14.0075
fffffqqqqqqqqffffff	chrX:153627669-153627897(+)$1	228	157	176	12.6393
[ddddqqqqqqqqdddd]d	chr10:124914102-124914367(+)$1	265	195	214	13.3748
fffffqqqqqqqqffffff	chr11:62609091-62609322(-)$1	231	88	107	12.6393
eeeeeqqqqqqqqeeeee>	chr17:41464612-41464880(-)$1	268	142	161	14.1063
eeeeeqqqqqqqqeeeee3	chr4:26859307-26859598(+)$1	291	77	96	14.2891
[ddddqqqqqqqqdddd]c	chr4:24538635-24538893(-)$1	258	88	107	13.5113
##cccqqqqqqqqccc22g	chr17:62501631-62501936(-)$1	305	22	41	12.2145
dd!!aqqqqqqqqa22ddd	chr17:62501566-62501822(-)$1	256	85	104	11.7847
d[cccqqqqqqqqcccddd	chr6:43745896-43746139(+)$1	243	142	161	12.6105
ee[bbqqqqqqqqbb]eee	chr1:245026262-245026521(-)$1	259	227	246	12.4242
f[cccqqqqqqqqcccfff	chr17:78311132-78311455(+)$1	323	56	75	12.8819
eeeeeqqqqqqqqeeeee:	chr5:154136430-154136705(+)$1	275	16	35	13.4104
eeeeeqqqqqqqqeeeee2	chr16:2809954-2810226(+)$1	272	197	216	14.0283
eeeeeqqqqqqqqeeeee:	chr1:1256077-1256365(-)$1	288	246	265	13.4104
##cccqqqqqqqqccceee	chr17:26940991-26941300(-)$1	309	160	179	13.0004
fffffqqqqqqqqffffff	chr17:66031922-66032178(+)$1	256	95	114	12.6393
fffffqqqqqqqqffffff	chr11:62609122-62609357(-)$1	235	123	142	12.6393
[eeeeepppppppeeeee]	chr17:46053121-46053361(+)$1	240	205	224	6.5315
a[cccqqqqqqqqccc]a]	chr11:66384506-66384784(+)$1	278	13	32	12.7742
bddddqqqqqqqqdddd]b	chr11:126137840-126138086(-)$1	246	73	92	12.8591
fffffqqqqqqqqffffff	chr3:47894658-47894935(-)$1	277	258	277	12.6393
[eeeeepppppppeeeee]	chr5:43483682-43484015(-)$1	333	269	288	6.5315
eddddqqqqqqqqdddd66	chr6:32940644-32940939(+)$1	295	10	29	12.5253

#otherMatches

#Seq PSSM
gcuuuuccauacugaaggu	chr2:132038631-132038895(+)$1	264	240	259	13.5113
UGGGUAAAGGAGACCCCAA	chr4:174254766-174255105(-)$1	339	306	325	6.6421
AGUGGAACAAGGGCUCCUU	chr6:43745783-43746080(+)$1	297	198	217	11.9547
AUGGGAAAAUCUGCCUAUA	chr1:35647628-35647884(-)$1	256	129	148	14.0979
CGACGGUUGGGAACGCGCG	chr4:100870965-100871245(-)$1	280	8	27	11.7622
GAGAGGAGAGGGGCUUUGG	chr3:100428670-100428988(+)$1	318	243	262	13.3607
GUUAGGUUCAGAACUAAAG	chr2:65496335-65496592(+)$1	257	67	86	13.1224
GGGAGUUCCCAUUUCUCCC	chr6:32942491-32942749(+)$1	258	144	163	8.7136
GAUGCCAAGAUUCGCAUUU	chrX:153627697-153627915(+)$1	218	129	148	12.6393
aacaguuucuugucuguac	chr10:71929890-71930169(-)$1	279	258	277	13.2243
GUCACUAACCUCUGUGAUC	chr6:43746033-43746273(+)$1	240	126	145	12.6610
GGGACAGAUAAaagucucc	chr16:2818320-2818551(+)$1	231	119	138	13.5588
GGAAGGGAAGUGACUCCUC	chr17:73775409-73775671(-)$1	262	169	188	13.6590
UAGGAGAAAUAGUUCUACA	chrX:70761529-70761810(+)$1	281	184	203	6.0509
UGGGUCAGUCAUAGCCuac	chr19:49122183-49122425(-)$1	242	186	205	14.0075
GAUGCCAAGAUUCGCAUUU	chrX:153627669-153627897(+)$1	228	157	176	12.6393
GGCGCAGGCGCAAGCGCAG	chr10:124914102-124914367(+)$1	265	195	214	13.3748
aucaguuuaauaucugaua	chr11:62609091-62609322(-)$1	231	88	107	12.6393
aucaguuuaauaucugaua	chr17:41464612-41464880(-)$1	268	142	161	14.1063
CGCGCUGUGGGCUGUGCGG	chr4:26859307-26859598(+)$1	291	77	96	14.2891
CUUGUUUAGUCCCACAGUG	chr4:24538635-24538893(-)$1	258	88	107	13.5113
UGUGCGGAUGAAAGCGGGA	chr17:62501631-62501936(-)$1	305	22	41	12.2145
AGUACAAAAUGCCGGCCUC	chr17:62501566-62501822(-)$1	256	85	104	11.7847
CCUCUUUCCUGCUAGAGCU	chr6:43745896-43746139(+)$1	243	142	161	12.6105
GGGCUUCGGGCCUGGGCCG	chr1:245026262-245026521(-)$1	259	227	246	12.4242
ACUGAGUGACAGAUCAUGU	chr17:78311132-78311455(+)$1	323	56	75	12.8819
GCCAGUUAGGAGGUUGGCG	chr5:154136430-154136705(+)$1	275	16	35	13.4104
UUCAGUGAAUGAUUUGAGU	chr16:2809954-2810226(+)$1	272	197	216	14.0283
CUCACAUCUGUCAGUGAGG	chr1:1256077-1256365(-)$1	288	246	265	13.4104
CAGGGGGAACACACCCGGG	chr17:26940991-26941300(-)$1	309	160	179	13.0004
CUUUUGGGUUGGGGGAGGG	chr17:66031922-66032178(+)$1	256	95	114	12.6393
aucaguuuaauaucugaua	chr11:62609122-62609357(-)$1	235	123	142	12.6393
UGGUGGAACGACCCCACCU	chr17:46053121-46053361(+)$1	240	205	224	6.5315
UGGUGAAAGGUAACGCGGA	chr11:66384506-66384784(+)$1	278	13	32	12.7742
AGUCUGAACACUGAGACAU	chr11:126137840-126138086(-)$1	246	73	92	12.8591
UUGGACAGCCAGAUCCAGG	chr3:47894658-47894935(-)$1	277	258	277	12.6393
CUGGGUGCGUGUGACCCAC	chr5:43483682-43484015(-)$1	333	269	288	6.5315
CGCCGGUUCCUUGCGGUCA	chr6:32940644-32940939(+)$1	295	10	29	12.5253

#DB
.((((........)))).)	chr2:132038631-132038895(+)$1	1	240	259	13.5113
((((..........)))))	chr4:174254766-174255105(-)$1	1	306	325	6.6421
((.((........)).)))	chr6:43745783-43746080(+)$1	1	198	217	11.9547
(((((........)))))(	chr1:35647628-35647884(-)$1	1	129	148	14.0979
((.((........))))).	chr4:100870965-100871245(-)$1	1	8	27	11.7622
.((((........)))).)	chr3:100428670-100428988(+)$1	1	243	262	13.3607
.((((........))))..	chr2:65496335-65496592(+)$1	1	67	86	13.1224
(((((.........)))))	chr6:32942491-32942749(+)$1	1	144	163	8.7136
(((((........))))))	chrX:153627697-153627915(+)$1	1	129	148	12.6393
.((((........)))).)	chr10:71929890-71930169(-)$1	1	258	277	13.2243
(((((........))))))	chr6:43746033-43746273(+)$1	1	126	145	12.6610
(((((........))))).	chr16:2818320-2818551(+)$1	1	119	138	13.5588
(((.(........))))))	chr17:73775409-73775671(-)$1	1	169	188	13.6590
(((((.......)))))))	chrX:70761529-70761810(+)$1	1	184	203	6.0509
(((((........))))))	chr19:49122183-49122425(-)$1	1	186	205	14.0075
(((((........))))))	chrX:153627669-153627897(+)$1	1	157	176	12.6393
.((((........)))).)	chr10:124914102-124914367(+)$1	1	195	214	13.3748
(((((........))))))	chr11:62609091-62609322(-)$1	1	88	107	12.6393
(((((........))))).	chr17:41464612-41464880(-)$1	1	142	161	14.1063
(((((........))))).	chr4:26859307-26859598(+)$1	1	77	96	14.2891
.((((........)))).)	chr4:24538635-24538893(-)$1	1	88	107	13.5113
..(((........)))..)	chr17:62501631-62501936(-)$1	1	22	41	12.2145
((..(........)..)))	chr17:62501566-62501822(-)$1	1	85	104	11.7847
(.(((........))))))	chr6:43745896-43746139(+)$1	1	142	161	12.6105
((.((........)).)))	chr1:245026262-245026521(-)$1	1	227	246	12.4242
(.(((........))))))	chr17:78311132-78311455(+)$1	1	56	75	12.8819
(((((........))))).	chr5:154136430-154136705(+)$1	1	16	35	13.4104
(((((........))))).	chr16:2809954-2810226(+)$1	1	197	216	14.0283
(((((........))))).	chr1:1256077-1256365(-)$1	1	246	265	13.4104
..(((........))))))	chr17:26940991-26941300(-)$1	1	160	179	13.0004
(((((........))))))	chr17:66031922-66032178(+)$1	1	95	114	12.6393
(((((........))))))	chr11:62609122-62609357(-)$1	1	123	142	12.6393
.(((((.......))))).	chr17:46053121-46053361(+)$1	1	205	224	6.5315
(.(((........))).).	chr11:66384506-66384784(+)$1	1	13	32	12.7742
(((((........)))).)	chr11:126137840-126138086(-)$1	1	73	92	12.8591
(((((........))))))	chr3:47894658-47894935(-)$1	1	258	277	12.6393
.(((((.......))))).	chr5:43483682-43484015(-)$1	1	269	288	6.5315
(((((........))))..	chr6:32940644-32940939(+)$1	1	10	29	12.5253

#PSSM
e : 0.34	f : 0.18	[ : 0.15	d : 0.07	# : 0.05	= : 0.02	c : 0.02	$ : 0.02	" : 0.02	g : 0.02	a : 0.02	b : 0.02	
e : 0.36	d : 0.26	f : 0.15	[ : 0.07	# : 0.05	= : 0.02	c : 0.02	g : 0.02	
e : 0.34	d : 0.23	f : 0.15	c : 0.13	[ : 0.07	g : 0.02	! : 0.02	
e : 0.31	d : 0.23	f : 0.15	c : 0.13	b : 0.07	g : 0.02	[ : 0.02	! : 0.02	
e : 0.31	d : 0.21	f : 0.15	c : 0.13	b : 0.07	a : 0.05	s : 0.02	g : 0.02	
q : 0.86	e : 0.05	s : 0.02	r : 0.02	p : 0.02	
q : 0.86	p : 0.07	s : 0.02	r : 0.02	
q : 0.86	p : 0.07	s : 0.02	r : 0.02	
q : 0.86	p : 0.07	s : 0.02	r : 0.02	
q : 0.86	p : 0.07	s : 0.02	r : 0.02	
q : 0.86	p : 0.07	s : 0.02	r : 0.02	
q : 0.86	p : 0.07	s : 0.02	r : 0.02	
q : 0.86	p : 0.05	s : 0.02	r : 0.02	e : 0.02	
e : 0.28	d : 0.21	f : 0.15	c : 0.13	b : 0.07	a : 0.05	s : 0.02	r : 0.02	g : 0.02	
e : 0.34	d : 0.23	f : 0.15	c : 0.13	b : 0.07	g : 0.02	2 : 0.02	
e : 0.34	d : 0.23	c : 0.15	f : 0.15	] : 0.05	g : 0.02	2 : 0.02	
e : 0.39	d : 0.28	f : 0.18	= : 0.02	c : 0.02	g : 0.02	2 : 0.02	] : 0.02	
e : 0.36	f : 0.18	] : 0.15	d : 0.07	c : 0.05	= : 0.02	4 : 0.02	g : 0.02	2 : 0.02	a : 0.02	6 : 0.02	
f : 0.18	e : 0.13	c : 0.10	] : 0.10	b : 0.10	d : 0.07	g : 0.05	: : 0.05	= : 0.02	4 : 0.02	5 : 0.02	> : 0.02	3 : 0.02	2 : 0.02	6 : 0.02	

#score	464.43240943798367
#seq	38
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF545FMX_NPM1_UTR_m1_run1.txt

#BEAR
gga[bb!!ccc!!bbpppppppbb4444ccc22bb]a]	chr11:618786-618990(-)$1	204	138	176	30.9128
::hhhhhhhh"""bbrrrrrrrrrbb333hhhhhhhh:	chr4:174253124-174253379(-)$1	255	125	163	28.1671
gga[bb!!ccc!!bbpppppppbb4444ccc22bb]a]	chr11:618790-619008(-)$1	218	156	194	30.9128
::hhhhhhhh"""bbrrrrrrrrrbb333hhhhhhhh:	chr4:174252984-174253324(-)$1	340	70	108	28.1671

#otherMatches

#Seq PSSM
CACAGCACAGACCCCAGAGCCAGGAACCUCUCAGCCGA	chr11:618786-618990(-)$1	204	138	176	30.9128
gaagaggaugaagaugaagaaUAAAUGGCUAUCCUUUA	chr4:174253124-174253379(-)$1	255	125	163	28.1671
CACAGCACAGACCCCAGAGCCAGGAACCUCUCAGCCGA	chr11:618790-619008(-)$1	218	156	194	30.9128
gaagaggaugaagaugaagaaUAAAUGGCUAUCCUUUA	chr4:174252984-174253324(-)$1	340	70	108	28.1671

#DB
(((.((..(((..((.......))....)))..)).).	chr11:618786-618990(-)$1	1	138	176	30.9128
..((((((((...((.........))...)))))))).	chr4:174253124-174253379(-)$1	1	125	163	28.1671
(((.((..(((..((.......))....)))..)).).	chr11:618790-619008(-)$1	1	156	194	30.9128
..((((((((...((.........))...)))))))).	chr4:174252984-174253324(-)$1	1	70	108	28.1671

#PSSM
g : 0.50	: : 0.50	
g : 0.50	: : 0.50	
a : 0.50	h : 0.50	
[ : 0.50	h : 0.50	
b : 0.50	h : 0.50	
b : 0.50	h : 0.50	
! : 0.50	h : 0.50	
! : 0.50	h : 0.50	
c : 0.50	h : 0.50	
c : 0.50	h : 0.50	
c : 0.50	" : 0.50	
! : 0.50	" : 0.50	
! : 0.50	" : 0.50	
b : 1.00	
b : 1.00	
p : 0.50	r : 0.50	
p : 0.50	r : 0.50	
p : 0.50	r : 0.50	
p : 0.50	r : 0.50	
p : 0.50	r : 0.50	
p : 0.50	r : 0.50	
p : 0.50	r : 0.50	
b : 0.50	r : 0.50	
b : 0.50	r : 0.50	
4 : 0.50	b : 0.50	
4 : 0.50	b : 0.50	
4 : 0.50	3 : 0.50	
4 : 0.50	3 : 0.50	
c : 0.50	3 : 0.50	
c : 0.50	h : 0.50	
c : 0.50	h : 0.50	
2 : 0.50	h : 0.50	
2 : 0.50	h : 0.50	
b : 0.50	h : 0.50	
b : 0.50	h : 0.50	
] : 0.50	h : 0.50	
a : 0.50	h : 0.50	
] : 0.50	: : 0.50	

#score	118.16010852970001
#seq	4
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF055TAZ_ZC3H11A_CDS_m2_run1.txt

#BEAR
!!ccccccmmmmccc22cc	chr3:52842469-52842705(+)$1	236	203	222	11.1247
::ccccccmmmmccc]ccc	chr7:930549-930790(+)$1	241	66	85	8.8976
eeee[cccmmmmccceeee	chr3:184106642-184106884(+)$1	242	121	140	9.2272
ccc!!cccmmmmccc22cc	chr19:45882858-45883166(-)$1	308	59	78	11.0777
ccc"""bbmmmmbb22ccc	chr1:19403242-19403498(-)$1	256	49	68	8.3339
eeee[cccmmmmccc]eee	chr1:19404368-19404616(-)$1	248	1	20	9.6408
!!dddd[ammmma]dddd2	chr19:49611271-49611523(+)$1	252	66	85	8.2683
cccc[cccmmmmccc]ccc	chr17:40268952-40269190(-)$1	238	52	71	10.7944
fff[ddddmmmmddddfff	chr3:9876873-9877166(+)$1	293	136	155	7.9064
ccc[ddddmmmmdddd]cc	chr17:78093022-78093320(+)$1	298	142	161	9.2244
!ccc[cccmmmmccc]ccc	chr4:110662023-110662280(-)$1	257	124	143	11.0277
e####cccmmmmccc22ee	chr19:36290819-36291066(-)$1	247	217	236	10.6638
[bb[ddddmmmmdddd]bb	chr12:30862661-30862939(-)$1	278	157	176	8.1966
&&&&&cccmmmmccc4444	chrM:15740-15971(+)$1	231	44	63	8.4382
!!eeeeeammmma]eeeee	chr3:49721395-49721652(-)$1	257	58	77	8.0313
!!ffffffmmmmffffff2	chr1:19421936-19422178(-)$1	242	35	54	7.6090
ccc[ddddmmmmdddd]cc	chr3:52842059-52842294(+)$1	235	18	37	9.2244
!!bb[cccmmmmccc]bbb	chr11:65404296-65404539(+)$1	243	91	110	9.7396
ddd!!cccmmmmccc22dd	chr3:53898716-53898934(+)$1	218	14	33	10.2607
!a!!ddddmmmmdddd22a	chr22:36661961-36662196(+)$1	235	108	127	9.1064
ccc!!cccmmmmccc22cc	chr14:24909146-24909402(-)$1	256	17	36	11.0777
eeee[cccmmmmccceeee	chr3:184106580-184106842(+)$1	262	183	202	9.2272
[cccddddmmmmdddd]cc	chrM:9867-10072(+)$1	205	100	119	9.1771
dddd[cccmmmmccc]ddd	chr2:198257052-198257285(-)$1	233	132	151	9.6402
&&&&&cccmmmmccc4444	chrM:15732-15940(+)$1	208	52	71	8.4382
&&&&&cccmmmmccc4444	chrM:15716-15932(+)$1	216	68	87	8.4382
bb"""cccmmmmccc4444	chr11:62370238-62370537(-)$1	299	8	27	10.5007
ee[ccc[ammmmaccceee	chr20:44978891-44979167(-)$1	276	213	232	8.6589
""ccc[ccclllccc22cc	chr20:61467728-61467955(+)$1	227	143	162	8.1050
bb"""cccmmmmccc333b	chr19:49611408-49611760(+)$1	352	158	177	10.5552
c[ffffffmmmmffffff]	chr19:18499630-18499894(+)$1	264	131	150	7.4647
:gggggggmmmmggggggg	chr9:117063464-117063685(+)$1	221	200	219	7.5692
d[a[ddddmmmmdddd]a3	chr9:117069913-117070157(+)$1	244	22	41	9.2191
ddd"""bbmmmmbb4444d	chrX:70777294-70777540(+)$1	246	165	184	8.1454
!ccc[cccmmmmccc]ccc	chr4:110661962-110662197(-)$1	235	41	60	11.0277
h[ccccccmmmmccc333c	chr11:77589683-77589936(-)$1	253	208	227	10.8997
c"""ddddmmmmddddccc	chr9:117071529-117071789(+)$1	260	94	113	9.2718
d[bbddddmmmmdddd]bb	chr14:24607919-24608167(+)$1	248	25	44	7.9709
cgggggggmmmmggggggg	chr1:207273122-207273410(+)$1	288	208	227	8.3327
a!!eeeeemmmmeeeee22	chr20:61468393-61468662(+)$1	269	112	131	7.5261
ddd!!cccmmmmccc22dd	chr3:49722120-49722390(-)$1	270	1	20	10.2607
dddd[cccmmmmccc]ddd	chr3:49721307-49721580(-)$1	273	201	220	9.6402
b[a[ddddmmmmdddd]ab	chr3:184104216-184104470(+)$1	254	147	166	8.8241
"""a[cccmmmmccc]a33	chr20:2815954-2816213(-)$1	259	75	94	11.2594
c[ccc[bbmmmmbb]ccc]	chr20:33867346-33867605(-)$1	259	142	161	8.0126
b[ccccccmmmmccc]ccc	chr3:184103819-184104045(+)$1	226	99	118	10.5599
###eeeeemmmmeeeeedd	chr20:34129986-34130230(+)$1	244	16	35	7.8040
!!ccccccmmmmccc22cc	chr3:52842587-52842843(+)$1	256	85	104	11.1247
##ccc[ccclllccc]ccc	chrX:48682236-48682524(+)$1	288	191	210	7.9914
!ffffffammmma]fffff	chr5:179264352-179264634(-)$1	282	19	38	7.5471
:ccc[cccmmmmccc]ccc	chr1:153617564-153617821(+)$1	257	14	33	10.0308
gggggggammmma]ggggg	chr4:187209664-187209886(+)$1	222	113	132	8.3359
iiiiiiiimmmmiiiiiii	chr5:79733123-79733379(+)$1	256	230	249	8.3877

#otherMatches

#Seq PSSM
CUACAUUGUCCCCAACCUG	chr3:52842469-52842705(+)$1	236	203	222	11.1247
AGGGCUGUGCCAACAUGCU	chr7:930549-930790(+)$1	241	66	85	8.8976
CUGCACGGCCCACCGGCGG	chr3:184106642-184106884(+)$1	242	121	140	9.2272
UGGGAUGGGCCACCACACC	chr19:45882858-45883166(-)$1	308	59	78	11.0777
GAUGAGGCAGCAGUAAGUC	chr1:19403242-19403498(-)$1	256	49	68	8.3339
CUUGUGAGUAUCCUCCUAG	chr1:19404368-19404616(-)$1	248	1	20	9.6408
GAGCCCUCCGAGGCGGGUG	chr19:49611271-49611523(+)$1	252	66	85	8.2683
UCGGUGGCAUCUGCUUCCG	chr17:40268952-40269190(-)$1	238	52	71	10.7944
AGCUAGGGAAGCCCCUGCU	chr3:9876873-9877166(+)$1	293	136	155	7.9064
CUGGUUCCCCAGGGAAGCA	chr17:78093022-78093320(+)$1	298	142	161	9.2244
AACUGUGGAAAACCAGAGU	chr4:110662023-110662280(-)$1	257	124	143	11.0277
UCAUCUUGACCUCAGCCAG	chr19:36290819-36291066(-)$1	247	217	236	10.6638
AGGAAAAGUAGUCUUUGCC	chr12:30862661-30862939(-)$1	278	157	176	8.1966
UUUUACCAUCAUUGGACAA	chrM:15740-15971(+)$1	231	44	63	8.4382
UUACCCACAACUGCUGGGU	chr3:49721395-49721652(-)$1	257	58	77	8.0313
CUACUGAAAUUGUUCAGUU	chr1:19421936-19422178(-)$1	242	35	54	7.6090
CCCGUGGCAAUGGCCAGGG	chr3:52842059-52842294(+)$1	235	18	37	9.2244
CUGCCCCUAUUGAGGAGCG	chr11:65404296-65404539(+)$1	243	91	110	9.7396
GUUUGCUGUUCACAGAUAA	chr3:53898716-53898934(+)$1	218	14	33	10.2607
AGAACUGUGACCACAGGGC	chr22:36661961-36662196(+)$1	235	108	127	9.1064
GGAGGGCCAGAAGGUGAUC	chr14:24909146-24909402(-)$1	256	17	36	11.0777
CUGCACGGCCCACCGGCGG	chr3:184106580-184106842(+)$1	262	183	202	9.2272
UCUCCAUCUAUUGAUGAGG	chrM:9867-10072(+)$1	205	100	119	9.1771
UGUAUAUUGGAAAAUUUAC	chr2:198257052-198257285(-)$1	233	132	151	9.6402
UUUUACCAUCAUUGGACAA	chrM:15732-15940(+)$1	208	52	71	8.4382
UUUUACCAUCAUUGGACAA	chrM:15716-15932(+)$1	216	68	87	8.4382
GAGUCCAGAAACCUGAAGA	chr11:62370238-62370537(-)$1	299	8	27	10.5007
UCAUCAUGGUAGCUGGGAG	chr20:44978891-44979167(-)$1	276	213	232	8.6589
GGGAUGAUCAGCGGUAAGU	chr20:61467728-61467955(+)$1	227	143	162	8.1050
gugggggcgguggccagga	chr19:49611408-49611760(+)$1	352	158	177	10.5552
CACUGUGCACCUGCGCGGA	chr19:18499630-18499894(+)$1	264	131	150	7.4647
AGUUGGGCCAUGGCUCAGC	chr9:117063464-117063685(+)$1	221	200	219	7.5692
ACGCUGCCUGCAGGUACCU	chr9:117069913-117070157(+)$1	244	22	41	9.2191
CCUCUUUCUCAUGGCUUCA	chrX:70777294-70777540(+)$1	246	165	184	8.1454
AACUGUGGAAAACCAGAGU	chr4:110661962-110662197(-)$1	235	41	60	11.0277
GCUAUAGCUUCAGCUUUUA	chr11:77589683-77589936(-)$1	253	208	227	10.8997
CUUAACAUGACCGUGUGGC	chr9:117071529-117071789(+)$1	260	94	113	9.2718
GCUGUGUUAUAUGACAUCA	chr14:24607919-24608167(+)$1	248	25	44	7.9709
UUCUGAAAUUGGUUUCAGA	chr1:207273122-207273410(+)$1	288	208	227	8.3327
GCUGGCCCCCCUGGGCCCC	chr20:61468393-61468662(+)$1	269	112	131	7.5261
GGCAAGCUAACAAGUGAGC	chr3:49722120-49722390(-)$1	270	1	20	10.2607
CAGAUGCUUCUUAGCCUUU	chr3:49721307-49721580(-)$1	273	201	220	9.6402
GAUACAGCCUCUGCUGCGC	chr3:184104216-184104470(+)$1	254	147	166	8.8241
UCCUGCCCAUUCGGGGACA	chr20:2815954-2816213(-)$1	259	75	94	11.2594
AGCACAGAGCUGUCAGUGG	chr20:33867346-33867605(-)$1	259	142	161	8.0126
GUAGCCCCAGAGGGGAGCU	chr3:184103819-184104045(+)$1	226	99	118	10.5599
CUGACUGGCCUGCCGGUGU	chr20:34129986-34130230(+)$1	244	16	35	7.8040
CUACAUUGUCCCCAACCUG	chr3:52842587-52842843(+)$1	256	85	104	11.1247
GGGGACUGUGGAACAAUCC	chrX:48682236-48682524(+)$1	288	191	210	7.9914
CAGGCCUCAAGAGAAGGCC	chr5:179264352-179264634(-)$1	282	19	38	7.5471
GCCGAGGCCGAGGCCGUGG	chr1:153617564-153617821(+)$1	257	14	33	10.0308
CAGGGGCCAUUGGAGUCCC	chr4:187209664-187209886(+)$1	222	113	132	8.3359
GUGGCAGUCAUAACUGCCG	chr5:79733123-79733379(+)$1	256	230	249	8.3877

#DB
..((((((....)))..))	chr3:52842469-52842705(+)$1	1	203	222	11.1247
..((((((....))).)))	chr7:930549-930790(+)$1	1	66	85	8.8976
((((.(((....)))))))	chr3:184106642-184106884(+)$1	1	121	140	9.2272
(((..(((....)))..))	chr19:45882858-45883166(-)$1	1	59	78	11.0777
(((...((....))..)))	chr1:19403242-19403498(-)$1	1	49	68	8.3339
((((.(((....))).)))	chr1:19404368-19404616(-)$1	1	1	20	9.6408
..((((.(....).)))).	chr19:49611271-49611523(+)$1	1	66	85	8.2683
((((.(((....))).)))	chr17:40268952-40269190(-)$1	1	52	71	10.7944
(((.((((....)))))))	chr3:9876873-9877166(+)$1	1	136	155	7.9064
(((.((((....)))).))	chr17:78093022-78093320(+)$1	1	142	161	9.2244
.(((.(((....))).)))	chr4:110662023-110662280(-)$1	1	124	143	11.0277
(....(((....)))..))	chr19:36290819-36291066(-)$1	1	217	236	10.6638
.((.((((....)))).))	chr12:30862661-30862939(-)$1	1	157	176	8.1966
.....(((....)))....	chrM:15740-15971(+)$1	1	44	63	8.4382
..((((((....).)))))	chr3:49721395-49721652(-)$1	1	58	77	8.0313
..((((((....)))))).	chr1:19421936-19422178(-)$1	1	35	54	7.6090
(((.((((....)))).))	chr3:52842059-52842294(+)$1	1	18	37	9.2244
..((.(((....))).)))	chr11:65404296-65404539(+)$1	1	91	110	9.7396
(((..(((....)))..))	chr3:53898716-53898934(+)$1	1	14	33	10.2607
.(..((((....))))..)	chr22:36661961-36662196(+)$1	1	108	127	9.1064
(((..(((....)))..))	chr14:24909146-24909402(-)$1	1	17	36	11.0777
((((.(((....)))))))	chr3:184106580-184106842(+)$1	1	183	202	9.2272
.(((((((....)))).))	chrM:9867-10072(+)$1	1	100	119	9.1771
((((.(((....))).)))	chr2:198257052-198257285(-)$1	1	132	151	9.6402
.....(((....)))....	chrM:15732-15940(+)$1	1	52	71	8.4382
.....(((....)))....	chrM:15716-15932(+)$1	1	68	87	8.4382
((...(((....)))....	chr11:62370238-62370537(-)$1	1	8	27	10.5007
((.(((.(....)))))))	chr20:44978891-44979167(-)$1	1	213	232	8.6589
..(((.(((...)))..))	chr20:61467728-61467955(+)$1	1	143	162	8.1050
((...(((....)))...)	chr19:49611408-49611760(+)$1	1	158	177	10.5552
(.((((((....)))))).	chr19:18499630-18499894(+)$1	1	131	150	7.4647
.(((((((....)))))))	chr9:117063464-117063685(+)$1	1	200	219	7.5692
(.(.((((....)))).).	chr9:117069913-117070157(+)$1	1	22	41	9.2191
(((...((....))....)	chrX:70777294-70777540(+)$1	1	165	184	8.1454
.(((.(((....))).)))	chr4:110661962-110662197(-)$1	1	41	60	11.0277
(.((((((....)))...)	chr11:77589683-77589936(-)$1	1	208	227	10.8997
(...((((....)))))))	chr9:117071529-117071789(+)$1	1	94	113	9.2718
(.((((((....)))).))	chr14:24607919-24608167(+)$1	1	25	44	7.9709
((((((((....)))))))	chr1:207273122-207273410(+)$1	1	208	227	8.3327
(..(((((....)))))..	chr20:61468393-61468662(+)$1	1	112	131	7.5261
(((..(((....)))..))	chr3:49722120-49722390(-)$1	1	1	20	10.2607
((((.(((....))).)))	chr3:49721307-49721580(-)$1	1	201	220	9.6402
(.(.((((....)))).))	chr3:184104216-184104470(+)$1	1	147	166	8.8241
...(.(((....))).)..	chr20:2815954-2816213(-)$1	1	75	94	11.2594
(.(((.((....)).))).	chr20:33867346-33867605(-)$1	1	142	161	8.0126
(.((((((....))).)))	chr3:184103819-184104045(+)$1	1	99	118	10.5599
...(((((....)))))))	chr20:34129986-34130230(+)$1	1	16	35	7.8040
..((((((....)))..))	chr3:52842587-52842843(+)$1	1	85	104	11.1247
..(((.(((...))).)))	chrX:48682236-48682524(+)$1	1	191	210	7.9914
.(((((((....).)))))	chr5:179264352-179264634(-)$1	1	19	38	7.5471
.(((.(((....))).)))	chr1:153617564-153617821(+)$1	1	14	33	10.0308
((((((((....).)))))	chr4:187209664-187209886(+)$1	1	113	132	8.3359
((((((((....)))))))	chr5:79733123-79733379(+)$1	1	230	249	8.3877

#PSSM
! : 0.18	c : 0.18	d : 0.13	e : 0.09	b : 0.07	: : 0.05	& : 0.05	[ : 0.03	" : 0.03	# : 0.03	f : 0.01	h : 0.01	a : 0.01	g : 0.01	i : 0.01	
c : 0.18	! : 0.13	[ : 0.13	d : 0.09	e : 0.07	# : 0.05	b : 0.05	& : 0.05	" : 0.05	g : 0.05	f : 0.03	: : 0.01	a : 0.01	i : 0.01	
c : 0.33	d : 0.11	e : 0.07	f : 0.07	" : 0.07	b : 0.05	& : 0.05	g : 0.05	# : 0.03	! : 0.03	a : 0.03	[ : 0.01	i : 0.01	
c : 0.26	e : 0.11	[ : 0.11	! : 0.09	" : 0.09	d : 0.05	& : 0.05	f : 0.05	g : 0.05	b : 0.03	# : 0.01	a : 0.01	i : 0.01	
[ : 0.20	d : 0.20	c : 0.16	! : 0.07	" : 0.07	& : 0.05	e : 0.05	f : 0.05	g : 0.05	# : 0.01	i : 0.01	
c : 0.50	d : 0.20	e : 0.05	f : 0.05	[ : 0.05	g : 0.05	" : 0.03	i : 0.01	
c : 0.52	d : 0.18	b : 0.05	e : 0.05	f : 0.05	g : 0.05	[ : 0.03	i : 0.01	
c : 0.52	d : 0.18	a : 0.09	b : 0.05	f : 0.03	g : 0.03	e : 0.03	i : 0.01	
m : 0.96	c : 0.03	
m : 0.96	l : 0.03	
m : 0.96	l : 0.03	
m : 0.96	l : 0.03	
c : 0.52	d : 0.18	a : 0.09	b : 0.05	f : 0.03	g : 0.03	e : 0.03	i : 0.01	
c : 0.54	d : 0.18	] : 0.07	b : 0.05	f : 0.03	g : 0.03	e : 0.03	i : 0.01	
c : 0.54	d : 0.20	e : 0.05	f : 0.05	g : 0.05	2 : 0.01	4 : 0.01	] : 0.01	i : 0.01	
] : 0.22	d : 0.20	2 : 0.16	e : 0.09	4 : 0.09	f : 0.05	g : 0.05	c : 0.03	3 : 0.03	i : 0.01	
c : 0.18	2 : 0.16	e : 0.13	] : 0.13	4 : 0.09	f : 0.07	d : 0.05	g : 0.05	3 : 0.03	b : 0.01	a : 0.01	i : 0.01	
c : 0.33	e : 0.11	d : 0.11	4 : 0.09	f : 0.07	b : 0.05	3 : 0.05	g : 0.05	2 : 0.03	a : 0.03	i : 0.01	
c : 0.33	e : 0.11	d : 0.11	b : 0.09	4 : 0.07	2 : 0.05	g : 0.05	f : 0.03	] : 0.03	3 : 0.03	a : 0.01	i : 0.01	

#score	487.8200990000734
#seq	53
#width	19
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF036IYW_NSUN2_CDS_m3_run2.txt

#BEAR
==========[a[a[dddd!!bbuuuuuuuuuuuubb22d	chr5:177019272-177019481(+)$1	209	115	155	52.3221
==========[a[a[dddd!!bbuuuuuuuuuuuubb22d	chr5:177019281-177019496(+)$1	215	106	146	52.3221

#otherMatches

#Seq PSSM
CCAUGGUCAUAGGUGCGGGGGCGGGGAGGAAGGGGCGAGU	chr5:177019272-177019481(+)$1	209	115	155	52.3221
CCAUGGUCAUAGGUGCGGGGGCGGGGAGGAAGGGGCGAGU	chr5:177019281-177019496(+)$1	215	106	146	52.3221

#DB
((((((((((.(.(.((((..((............))..)	chr5:177019272-177019481(+)$1	1	115	155	52.3221
((((((((((.(.(.((((..((............))..)	chr5:177019281-177019496(+)$1	1	106	146	52.3221

#PSSM
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
= : 1.00	
[ : 1.00	
a : 1.00	
[ : 1.00	
a : 1.00	
[ : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
d : 1.00	
! : 1.00	
! : 1.00	
b : 1.00	
b : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
u : 1.00	
b : 1.00	
b : 1.00	
2 : 1.00	
2 : 1.00	
d : 1.00	

#score	104.64437890459999
#seq	2
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF527BMM_RBM15_transcript_m2_run1.txt

#BEAR
eeeeettttttttttteeee	chr4:17805929-17806215(-)$1	286	189	209	23.1946
ffffuuuuuuuuuuuuffff	chr11:70261929-70262185(+)$1	256	102	122	21.7623
eeeeuuuuuuuuuuuueeee	chr3:121415362-121415601(-)$1	239	175	195	22.5882
ddddvvvvvvvvvvvvvddd	chr22:50001583-50001818(-)$1	235	35	55	21.7173
fffbbtttttttttttbb]f	chr5:139781492-139781736(+)$1	244	119	139	21.8065
ff!!attttttttttta22f	chr17:27071123-27071363(+)$1	240	17	37	22.2335
eeeeuuuuuuuuuuuueeee	chr16:30793331-30793589(-)$1	258	166	186	22.5882
ccccctttttttttttccc:	chr1:67895076-67895321(-)$1	245	212	232	21.7027
gggguuuuuuuuuuuugggg	chr5:79732523-79732836(+)$1	313	9	29	22.3892
Eddddtttttttttttdddd	chr22:20819212-20819459(-)$1	247	157	177	21.2394
ggggvvvvvvvvvvvvvggg	chr12:65564646-65564893(+)$1	247	89	109	22.4005
gggggtttttttttttgggg	chr8:53566769-53567060(-)$1	291	171	191	22.9462
====vvvvvvvvvvvvv===	chr7:77407849-77408098(+)$1	249	84	104	22.3234
d!!bbtttttttttttbbdd	chr16:53243293-53243622(+)$1	329	225	245	21.9078
eeeeettttttttttteeee	chr7:151845251-151845499(-)$1	248	26	46	23.1946
[cccwwwwwwwwwwwwwwcc	chr19:867892-868202(-)$1	310	151	171	20.3338
Gddddtttttttttttdddd	chr2:201728976-201729228(-)$1	252	95	115	21.7783
dddduuuuuuuuuuuudddd	chr2:219618820-219619220(+)$1	400	116	136	21.6725
d!!bbvvvvvvvvvvvvvbb	chr2:232325102-232325311(-)$1	209	72	92	20.7075
fffffwwwwwwwwwwwwwwf	chr10:74034668-74034920(+)$1	252	216	236	19.4145
cccbbtttttttttttbb]c	chr7:99621343-99621587(+)$1	244	144	164	21.8353
eeeeuuuuuuuuuuuueeee	chr6:12122311-12122556(+)$1	245	118	138	22.5882
dddduuuuuuuuuuuudddd	chr11:64846819-64847073(-)$1	254	171	191	21.6725
ffffftttttttttttffff	chr6:31595529-31595779(+)$1	250	148	168	22.3621
eeeeuuuuuuuuuuuueeee	chr6:32084226-32084502(-)$1	276	141	161	22.5882
hhhhhvvvvvvvvvvvvvhh	chr4:128806970-128807230(+)$1	260	47	67	20.5823
eeeeettttttttttteeee	chr11:47296095-47296361(+)$1	266	0	20	23.1946
ffffftttttttttttffff	chr17:55183926-55184226(+)$1	300	226	246	22.3621
hhhhhttttttttttthhhh	chr2:74734075-74734336(-)$1	261	71	91	21.2586
[ddddvvvvvvvvvvvvvdd	chr1:45223622-45223841(+)$1	219	150	170	21.3805
eeeeettttttttttteeee	chr19:28983585-28983870(-)$1	285	220	240	23.1946
hddddtttttttttttdddd	chr22:50832334-50832625(+)$1	291	79	99	22.1318
ffffftttttttttttffff	chr7:100483387-100483618(+)$1	231	135	155	22.3621
eeeeettttttttttteeee	chr16:89351755-89351996(-)$1	241	166	186	23.1946
gggggtttttttttttgggg	chr1:53322973-53323213(+)$1	240	207	227	22.9462
eeeeuuuuuuuuuuuueeee	chr14:65270377-65270679(-)$1	302	210	230	22.5882
fffffwwwwwwwwwwwwwwf	chr7:151864185-151864471(-)$1	286	78	98	19.4145
dddduuuuuuuuuuuudddd	chr10:94369117-94369331(+)$1	214	102	122	21.6725
eeeeettttttttttteeee	chr16:56966441-56966689(+)$1	248	56	76	23.1946
eeeeettttttttttteeee	chr7:139415348-139415598(-)$1	250	53	73	23.1946
###bbwwwwwwwwwwwwwwb	chr8:95518767-95519003(-)$1	236	61	81	18.5878
b[ccctttttttttttccc]	chr9:100774602-100774804(+)$1	202	141	161	22.5492
fffffvvvvvvvvvvvvvff	chr12:56998837-56999105(-)$1	268	226	246	21.3898
""cccvvvvvvvvvvvvvcc	chr1:114948147-114948455(-)$1	308	250	270	21.5510
iiiiitttttttttttiiii	chr11:3774447-3774712(-)$1	265	194	214	22.6702
dd[bbtttttttttttbbdd	chr1:219374073-219374351(+)$1	278	19	39	21.7885
!!ccctttttttttttccc]	chr15:93568030-93568270(+)$1	240	91	111	22.9088
=====ttttttttttt====	chr7:97493567-97493788(-)$1	221	194	214	22.9405
!!ccctttttttttttccca	chr19:6744887-6745139(+)$1	252	10	30	22.8608
eeeeuuuuuuuuuuuueeee	chr7:151873747-151873995(-)$1	248	90	110	22.5882
gggguuuuuuuuuuuugggg	chr6:90571770-90572024(+)$1	254	208	228	22.3892
eeeeettttttttttteeee	chr16:89346977-89347193(-)$1	216	26	46	23.1946
eeevvvvvvvvvvvvveeee	chr12:53777141-53777397(+)$1	256	110	130	21.9477
""cccuuuuuuuuuuuuccc	chr2:99980703-99980978(+)$1	275	150	170	21.8143
gggggtttttttttttgggg	chr4:1725432-1725688(+)$1	256	126	146	22.9462
ggggvvvvvvvvvvvvvggg	chr22:45718974-45719226(+)$1	252	8	28	22.4005
ggggvvvvvvvvvvvvvggg	chr8:103310974-103311217(-)$1	243	106	126	22.4005
gggggtttttttttttgggg	chr4:160262939-160263199(+)$1	260	78	98	22.9462

#otherMatches

#Seq PSSM
GUAAGUGACUAAUACUUUUA	chr4:17805929-17806215(-)$1	286	189	209	23.1946
AUGUAUUCCCCGUUACACAU	chr11:70261929-70262185(+)$1	256	102	122	21.7623
AGCUGAAGGAAAUAGAGGCU	chr3:121415362-121415601(-)$1	239	175	195	22.5882
ucucuguuguccucccugag	chr22:50001583-50001818(-)$1	235	35	55	21.7173
UCCGCGAUCCGCCCCAGCUG	chr5:139781492-139781736(+)$1	244	119	139	21.8065
UCGACUACAAGUUCCUGGAG	chr17:27071123-27071363(+)$1	240	17	37	22.2335
CCAGAAGAGUCCAGAGCUGG	chr16:30793331-30793589(-)$1	258	166	186	22.5882
CCGCAUGUCCUUUAUUUGUU	chr1:67895076-67895321(-)$1	245	212	232	21.7027
UUUGAUUUAAGUCUCCCGAA	chr5:79732523-79732836(+)$1	313	9	29	22.3892
AAGUAUCUAAACCCCUUACU	chr22:20819212-20819459(-)$1	247	157	177	21.2394
CUCCAGCAAUUUAAACGGGA	chr12:65564646-65564893(+)$1	247	89	109	22.4005
gauuuugggaaauguuggau	chr8:53566769-53567060(-)$1	291	171	191	22.9462
AUUUAUUUUAUUCCAAGGAA	chr7:77407849-77408098(+)$1	249	84	104	22.3234
UAAUCGUAUAAUAUCAGAGG	chr16:53243293-53243622(+)$1	329	225	245	21.9078
GCAAGAAUUAAGUUACUUUG	chr7:151845251-151845499(-)$1	248	26	46	23.1946
UCGGUUUCCUUGCCUCACCC	chr19:867892-868202(-)$1	310	151	171	20.3338
CGCGCCCCUCUUUCCUGCGC	chr2:201728976-201729228(-)$1	252	95	115	21.7783
UUUCCCCUUAUCCCCAGAAA	chr2:219618820-219619220(+)$1	400	116	136	21.6725
AAAUGGCCAAACAGAAAGCA	chr2:232325102-232325311(-)$1	209	72	92	20.7075
GCUUCCGAGUCAUCAAGAAG	chr10:74034668-74034920(+)$1	252	216	236	19.4145
GCCCCGAUAGUGGAGAGGAG	chr7:99621343-99621587(+)$1	244	144	164	21.8353
GGAGAACAAGUUCAAGCUCU	chr6:12122311-12122556(+)$1	245	118	138	22.5882
CCAGACAUGACUCUCCCUGG	chr11:64846819-64847073(-)$1	254	171	191	21.6725
GGCGCAUGCAAGAAGAGCGC	chr6:31595529-31595779(+)$1	250	148	168	22.3621
CUGGCCCAUCUGUUCCCCAG	chr6:32084226-32084502(-)$1	276	141	161	22.5882
CAUGAAAAGCACUAUACAUU	chr4:128806970-128807230(+)$1	260	47	67	20.5823
UGUCUUUAUGUUCUUCAGGC	chr11:47296095-47296361(+)$1	266	0	20	23.1946
UGUCCAGCCCCACCAAGGAC	chr17:55183926-55184226(+)$1	300	226	246	22.3621
CGAGUGAAGAUCAAAGACUU	chr2:74734075-74734336(-)$1	261	71	91	21.2586
GGAAGUCUAUGUGACAUUCU	chr1:45223622-45223841(+)$1	219	150	170	21.3805
UCUGAUAUUUCCCUGCUCAG	chr19:28983585-28983870(-)$1	285	220	240	23.1946
AGUUAAUGGAUGAAGAUGAC	chr22:50832334-50832625(+)$1	291	79	99	22.1318
UAACAUUAAAGAGAUCUGUU	chr7:100483387-100483618(+)$1	231	135	155	22.3621
GAAACGAAAUCCAAUAGUUU	chr16:89351755-89351996(-)$1	241	166	186	23.1946
AUGUCUGCUUCACCUUGAUA	chr1:53322973-53323213(+)$1	240	207	227	22.9462
CCACUGCCUGGAGAAUGUGG	chr14:65270377-65270679(-)$1	302	210	230	22.5882
GUAUCUUGAAGAACAAAUUG	chr7:151864185-151864471(-)$1	286	78	98	19.4145
GCAGCAAAAAGGACAACUGC	chr10:94369117-94369331(+)$1	214	102	122	21.6725
gucaguaaucagcagccuga	chr16:56966441-56966689(+)$1	248	56	76	23.1946
ACGGAGCCAGGUAAGAUCCG	chr7:139415348-139415598(-)$1	250	53	73	23.1946
AUUGCACUUAUCUUACCAAG	chr8:95518767-95519003(-)$1	236	61	81	18.5878
UGAGGAUGAAGGUGGGCCUA	chr9:100774602-100774804(+)$1	202	141	161	22.5492
CUGGCUUUCCCUCCUACUGU	chr12:56998837-56999105(-)$1	268	226	246	21.3898
AAGCCUCAUGCACAGGUCGG	chr1:114948147-114948455(-)$1	308	250	270	21.5510
GAAGUGACACAGCUUGACUU	chr11:3774447-3774712(-)$1	265	194	214	22.6702
uuaucacuugauuauagaag	chr1:219374073-219374351(+)$1	278	19	39	21.7885
CACCACUCCUGCACUUUGGC	chr15:93568030-93568270(+)$1	240	91	111	22.9088
UGGCUGUAUGUUCAGAAGCU	chr7:97493567-97493788(-)$1	221	194	214	22.9405
CGUGCACCCUCCGACAGCAG	chr19:6744887-6745139(+)$1	252	10	30	22.8608
UUGAGAAAAGAACCAAUCGA	chr7:151873747-151873995(-)$1	248	90	110	22.5882
AUGUUUCUAAAGAUGUACAU	chr6:90571770-90572024(+)$1	254	208	228	22.3892
CCAGCUACCUGGAGCCGCUG	chr16:89346977-89347193(-)$1	216	26	46	23.1946
AGCUGCUUCCAUUCCUGCUG	chr12:53777141-53777397(+)$1	256	110	130	21.9477
GAAGCUACUCUUAAACUGCU	chr2:99980703-99980978(+)$1	275	150	170	21.8143
ACUGGAAAACUCACACCCGG	chr4:1725432-1725688(+)$1	256	126	146	22.9462
GACAGUUCCAGACUUUGUGU	chr22:45718974-45719226(+)$1	252	8	28	22.4005
UCUCCAGCCCUAUCUACGAG	chr8:103310974-103311217(-)$1	243	106	126	22.4005
UGAAGAUCAUUAAGCAUUUC	chr4:160262939-160263199(+)$1	260	78	98	22.9462

#DB
(((((...........))))	chr4:17805929-17806215(-)$1	1	189	209	23.1946
((((............))))	chr11:70261929-70262185(+)$1	1	102	122	21.7623
((((............))))	chr3:121415362-121415601(-)$1	1	175	195	22.5882
((((.............)))	chr22:50001583-50001818(-)$1	1	35	55	21.7173
(((((...........)).)	chr5:139781492-139781736(+)$1	1	119	139	21.8065
((..(...........)..)	chr17:27071123-27071363(+)$1	1	17	37	22.2335
((((............))))	chr16:30793331-30793589(-)$1	1	166	186	22.5882
))(((...........))).	chr1:67895076-67895321(-)$1	1	212	232	21.7027
((((............))))	chr5:79732523-79732836(+)$1	1	9	29	22.3892
(((((...........))))	chr22:20819212-20819459(-)$1	1	157	177	21.2394
((((.............)))	chr12:65564646-65564893(+)$1	1	89	109	22.4005
(((((...........))))	chr8:53566769-53567060(-)$1	1	171	191	22.9462
((((.............)))	chr7:77407849-77408098(+)$1	1	84	104	22.3234
(..((...........))))	chr16:53243293-53243622(+)$1	1	225	245	21.9078
(((((...........))))	chr7:151845251-151845499(-)$1	1	26	46	23.1946
.(((..............))	chr19:867892-868202(-)$1	1	151	171	20.3338
(((((...........))))	chr2:201728976-201729228(-)$1	1	95	115	21.7783
((((............))))	chr2:219618820-219619220(+)$1	1	116	136	21.6725
(..((.............))	chr2:232325102-232325311(-)$1	1	72	92	20.7075
(((((..............)	chr10:74034668-74034920(+)$1	1	216	236	19.4145
(((((...........)).)	chr7:99621343-99621587(+)$1	1	144	164	21.8353
((((............))))	chr6:12122311-12122556(+)$1	1	118	138	22.5882
((((............))))	chr11:64846819-64847073(-)$1	1	171	191	21.6725
(((((...........))))	chr6:31595529-31595779(+)$1	1	148	168	22.3621
((((............))))	chr6:32084226-32084502(-)$1	1	141	161	22.5882
(((((.............))	chr4:128806970-128807230(+)$1	1	47	67	20.5823
(((((...........))))	chr11:47296095-47296361(+)$1	1	0	20	23.1946
(((((...........))))	chr17:55183926-55184226(+)$1	1	226	246	22.3621
(((((...........))))	chr2:74734075-74734336(-)$1	1	71	91	21.2586
.((((.............))	chr1:45223622-45223841(+)$1	1	150	170	21.3805
(((((...........))))	chr19:28983585-28983870(-)$1	1	220	240	23.1946
(((((...........))))	chr22:50832334-50832625(+)$1	1	79	99	22.1318
(((((...........))))	chr7:100483387-100483618(+)$1	1	135	155	22.3621
(((((...........))))	chr16:89351755-89351996(-)$1	1	166	186	23.1946
(((((...........))))	chr1:53322973-53323213(+)$1	1	207	227	22.9462
((((............))))	chr14:65270377-65270679(-)$1	1	210	230	22.5882
(((((..............)	chr7:151864185-151864471(-)$1	1	78	98	19.4145
((((............))))	chr10:94369117-94369331(+)$1	1	102	122	21.6725
(((((...........))))	chr16:56966441-56966689(+)$1	1	56	76	23.1946
(((((...........))))	chr7:139415348-139415598(-)$1	1	53	73	23.1946
...((..............)	chr8:95518767-95519003(-)$1	1	61	81	18.5878
(.(((...........))).	chr9:100774602-100774804(+)$1	1	141	161	22.5492
(((((.............))	chr12:56998837-56999105(-)$1	1	226	246	21.3898
..(((.............))	chr1:114948147-114948455(-)$1	1	250	270	21.5510
(((((...........))))	chr11:3774447-3774712(-)$1	1	194	214	22.6702
((.((...........))))	chr1:219374073-219374351(+)$1	1	19	39	21.7885
..(((...........))).	chr15:93568030-93568270(+)$1	1	91	111	22.9088
(((((...........))))	chr7:97493567-97493788(-)$1	1	194	214	22.9405
..(((...........))))	chr19:6744887-6745139(+)$1	1	10	30	22.8608
((((............))))	chr7:151873747-151873995(-)$1	1	90	110	22.5882
((((............))))	chr6:90571770-90572024(+)$1	1	208	228	22.3892
(((((...........))))	chr16:89346977-89347193(-)$1	1	26	46	23.1946
(((.............))))	chr12:53777141-53777397(+)$1	1	110	130	21.9477
..(((............)))	chr2:99980703-99980978(+)$1	1	150	170	21.8143
(((((...........))))	chr4:1725432-1725688(+)$1	1	126	146	22.9462
((((.............)))	chr22:45718974-45719226(+)$1	1	8	28	22.4005
((((.............)))	chr8:103310974-103311217(-)$1	1	106	126	22.4005
(((((...........))))	chr4:160262939-160263199(+)$1	1	78	98	22.9462

#PSSM
e : 0.25	f : 0.15	g : 0.15	d : 0.12	h : 0.05	c : 0.03	= : 0.03	[ : 0.03	" : 0.03	! : 0.03	E : 0.01	G : 0.01	# : 0.01	b : 0.01	i : 0.01	
e : 0.25	f : 0.15	d : 0.15	g : 0.15	! : 0.06	c : 0.05	= : 0.03	h : 0.03	" : 0.03	# : 0.01	[ : 0.01	i : 0.01	
e : 0.25	g : 0.15	f : 0.13	d : 0.13	c : 0.13	! : 0.05	= : 0.03	h : 0.03	# : 0.01	i : 0.01	[ : 0.01	
e : 0.24	g : 0.15	d : 0.13	f : 0.12	c : 0.12	b : 0.10	= : 0.03	h : 0.03	! : 0.01	i : 0.01	v : 0.01	
u : 0.20	e : 0.13	v : 0.10	b : 0.10	c : 0.10	f : 0.10	d : 0.06	g : 0.06	h : 0.03	a : 0.01	w : 0.01	i : 0.01	= : 0.01	
t : 0.51	u : 0.22	v : 0.18	w : 0.06	
t : 0.51	u : 0.22	v : 0.18	w : 0.06	
t : 0.51	u : 0.22	v : 0.18	w : 0.06	
t : 0.51	u : 0.22	v : 0.18	w : 0.06	
t : 0.51	u : 0.22	v : 0.18	w : 0.06	
t : 0.51	u : 0.22	v : 0.18	w : 0.06	
t : 0.51	u : 0.22	v : 0.18	w : 0.06	
t : 0.51	u : 0.22	v : 0.18	w : 0.06	
t : 0.51	u : 0.22	v : 0.18	w : 0.06	
t : 0.51	u : 0.22	v : 0.18	w : 0.06	
t : 0.51	u : 0.22	v : 0.18	w : 0.06	
e : 0.25	v : 0.17	g : 0.10	d : 0.10	f : 0.06	b : 0.06	c : 0.06	w : 0.06	a : 0.01	h : 0.01	i : 0.01	= : 0.01	u : 0.01	
e : 0.25	g : 0.15	d : 0.12	c : 0.08	v : 0.08	f : 0.06	b : 0.06	w : 0.06	= : 0.03	2 : 0.01	h : 0.01	i : 0.01	
e : 0.25	d : 0.17	g : 0.15	c : 0.12	f : 0.08	w : 0.05	] : 0.03	= : 0.03	h : 0.03	2 : 0.01	b : 0.01	i : 0.01	
e : 0.25	d : 0.17	f : 0.15	g : 0.15	c : 0.06	= : 0.03	b : 0.03	h : 0.03	] : 0.03	: : 0.01	i : 0.01	a : 0.01	

#score	1281.4955872776466
#seq	58
#width	20
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF617LAH_AGGF1_transcript_m3_run2.txt

#BEAR
:::::::::::::::::::::::::::::::::	chr21:46575759-46575993(+)$1	234	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr10:128815625-128815937(+)$1	312	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr16:46949775-46949983(+)$1	208	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr10:704824-705175(+)$1	351	133	166	14.9868
::::::::::::::::::::::::::CCC::::	chr11:2159433-2159637(-)$1	204	0	33	14.0799
:::::::::::::::::::::::::::::::::	chr16:81702944-81703201(+)$1	257	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr20:62579834-62580076(-)$1	242	48	81	14.9868
:::::::::::::::::::::::::::::::::	chr12:123997384-123997698(-)$1	314	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr14:104342038-104342275(-)$1	237	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr21:46576111-46576404(+)$1	293	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr12:122188410-122188706(+)$1	296	62	95	14.9868
:::::::::::::::::::::::::::::::::	chr12:57585604-57585882(+)$1	278	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr8:141561748-141562053(-)$1	305	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr1:12644707-12644927(-)$1	220	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr6:159048026-159048255(+)$1	229	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr16:4718870-4719160(+)$1	290	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr6:158051404-158051753(+)$1	349	72	105	14.9868
:::::::::::::::::::::::::::::::::	chr12:131441966-131442225(+)$1	259	73	106	14.9868
:::::::::::::::::::::::::::::::::	chr19:7228771-7229029(-)$1	258	46	79	14.9868
:::::::::::::::::::::::::::::::::	chr9:136798716-136798966(-)$1	250	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr19:4553121-4553439(-)$1	318	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr2:3049703-3049953(-)$1	250	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr11:63880839-63881132(-)$1	293	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr1:16469490-16469789(-)$1	299	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr19:6716951-6717171(-)$1	220	70	103	14.9868
:::::::::::::::::::::::::::::::::	chr22:32025310-32025610(-)$1	300	72	105	14.9868
:::::::::::::::::::::::::::::::::	chr16:46949536-46949747(+)$1	211	164	197	14.9868
:::::::::::::::::::::::::::::::::	chr9:95973765-95974013(+)$1	248	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr7:158233263-158233528(-)$1	265	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr9:116928625-116928912(+)$1	287	12	45	14.9868
:::::::::::::::::::::::::::::::::	chr9:136802386-136802622(-)$1	236	31	64	14.9868
:::::::::::::::::::::::::::::::::	chr7:157610523-157610771(-)$1	248	24	57	14.9868
:::::::::::::::::::::::::::::::::	chr1:12644980-12645203(-)$1	223	178	211	14.9868
:::::::::::::::::::::::::::::::::	chr4:7029234-7029542(+)$1	308	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr19:47507115-47507372(+)$1	257	55	88	14.9868
:::::::::::::::::::::::::::::::::	chr12:121433183-121433467(+)$1	284	7	40	14.9868
:::::::::::::::::::::::::::::::::	chr22:47399934-47400189(+)$1	255	97	130	14.9868
:::::::::::::::::::::::::::::::::	chr7:157610801-157611082(-)$1	281	213	246	14.9868
:::::::::::::::::::::::::::::::::	chr14:34912163-34912392(-)$1	229	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr19:33949238-33949474(-)$1	236	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr10:16798643-16798980(-)$1	337	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr11:70701973-70702225(-)$1	252	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr11:70482579-70482843(-)$1	264	127	160	14.9868
:::::::::::::::::::::::::::::::::	chr11:63881004-63881258(-)$1	254	21	54	14.9868
:::::::::::::::::::::::::::::::::	chr22:44375838-44376095(+)$1	257	96	129	14.9868
:::::::::::::::::::::::::::::::::	chr7:157800554-157800775(-)$1	221	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr9:136736030-136736339(-)$1	309	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr17:78255396-78255677(+)$1	281	0	33	14.9868
::::::::::::::::CCC::::::::::::::	chr2:218673777-218674019(-)$1	242	0	33	14.0799
:::::::::::::::::::::::::::::::::	chr1:230411427-230411681(+)$1	254	211	244	14.9868
:::::::::::::::::::::::::::::::::	chr22:47400046-47400290(+)$1	244	93	126	14.9868
:::::::::::::::::::::::::::::::::	chr21:46899473-46899719(+)$1	246	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr22:25903235-25903522(+)$1	287	37	70	14.9868
:::::::::::::::::::::::::::::::::	chr11:2153352-2153558(-)$1	206	172	205	14.9868
:::::::::::::::::::::::::::::::::	chr6:158051986-158052239(+)$1	253	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr16:46949145-46949381(+)$1	236	149	182	14.9868
:::::::::::::::::::::::::::::::::	chrX:73393339-73393676(-)$1	337	96	129	14.9868
:::::::::::::::::::::::::::::::::	chr1:19252095-19252401(-)$1	306	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr12:57585429-57585723(+)$1	294	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr12:57585815-57586051(+)$1	236	29	62	14.9868
:::::::::::::::::::::::::::::::::	chr6:158052039-158052295(+)$1	256	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr16:16265319-16265579(-)$1	260	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr5:92826327-92826685(-)$1	358	12	45	14.9868
:::::::::::::::::::::::::::::::::	chr19:6717507-6717736(-)$1	229	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr9:140615571-140615823(+)$1	252	211	244	14.9868
:::::::::::::::::::::::::::::::::	chr17:40374124-40374410(-)$1	286	158	191	14.9868
d::::::::::::::::::::::::::::::::	chr21:46950247-46950514(-)$1	267	189	222	13.7480
:::::::::::::::::::::::::::::::::	chr17:55726342-55726587(+)$1	245	169	202	14.9868
:::::::::::::::::::::::::::::::::	chr12:131502133-131502401(+)$1	268	60	93	14.9868
:::::::::::::::::::::::::::::::::	chr7:158233585-158233858(-)$1	273	0	33	14.9868
:::::::::::::::::::::::::::::::::	chr3:10407300-10407609(-)$1	309	54	87	14.9868
:::::::::::::::::::::::::::::::::	chr8:38776022-38776272(+)$1	250	23	56	14.9868
:::::::::::::::::::::::::::::::::	chr16:46949422-46949655(+)$1	233	0	33	14.9868

#otherMatches

#Seq PSSM
cccacccaucauccauucauccaaccauucauc	chr21:46575759-46575993(+)$1	234	0	33	14.9868
agcacagauacagacacagacauacauacagau	chr10:128815625-128815937(+)$1	312	0	33	14.9868
acaccccacaccacacuacaacuacacacacac	chr16:46949775-46949983(+)$1	208	0	33	14.9868
cacacaUUCACAUAAUCACAUUCAUAAUACCAA	chr10:704824-705175(+)$1	351	133	166	14.9868
GAAUUCUCCCCCCCCCCCCAAAAAAAAGCCAUC	chr11:2159433-2159637(-)$1	204	0	33	14.0799
cacaccccucucaccuccuuccacacccaccuc	chr16:81702944-81703201(+)$1	257	0	33	14.9868
cccucccucucacacacgccccucccucucaca	chr20:62579834-62580076(-)$1	242	48	81	14.9868
ccacacacacacggaccucacacaccacacaca	chr12:123997384-123997698(-)$1	314	0	33	14.9868
acccauccacccauccacccauccaucuaccca	chr14:104342038-104342275(-)$1	237	0	33	14.9868
ugucauccauccauccauccacccacccaccca	chr21:46576111-46576404(+)$1	293	0	33	14.9868
aacccacacccacacuccacaccaacaccccac	chr12:122188410-122188706(+)$1	296	62	95	14.9868
ccacaccacacacauaccacacacacaccacac	chr12:57585604-57585882(+)$1	278	0	33	14.9868
ccauucauccauucauccaucucuccaucucuc	chr8:141561748-141562053(-)$1	305	0	33	14.9868
gacccacacagacacacacacacacacacuuac	chr1:12644707-12644927(-)$1	220	0	33	14.9868
CUCUCAGCACACCCUUACAGCCUCUCACUCUCA	chr6:159048026-159048255(+)$1	229	0	33	14.9868
acucauacacauauacauagacacacauucacu	chr16:4718870-4719160(+)$1	290	0	33	14.9868
acucacacacacucacacucuuacccacacuca	chr6:158051404-158051753(+)$1	349	72	105	14.9868
cacccucacacauucacacacaucccacaucca	chr12:131441966-131442225(+)$1	259	73	106	14.9868
ACUCUGCCAACAAUCCACACACCUGUCCCUCCA	chr19:7228771-7229029(-)$1	258	46	79	14.9868
accauccauccauccauccacucauccauucau	chr9:136798716-136798966(-)$1	250	0	33	14.9868
ccauccaacucaccuauccauccauccauccau	chr19:4553121-4553439(-)$1	318	0	33	14.9868
auacaccacacacauacauacacaccacauaca	chr2:3049703-3049953(-)$1	250	0	33	14.9868
accugucugcccauccauccauccauccaucca	chr11:63880839-63881132(-)$1	293	0	33	14.9868
CACCCAUUCUCUCUCCCACUCACUCUUCCAUCC	chr1:16469490-16469789(-)$1	299	0	33	14.9868
ccuccccuccucccucucucccccucguucacu	chr19:6716951-6717171(-)$1	220	70	103	14.9868
acacccccucaccuacacacacccucgcaccua	chr22:32025310-32025610(-)$1	300	72	105	14.9868
cucauauacccaccacaccuacacacacacccc	chr16:46949536-46949747(+)$1	211	164	197	14.9868
acucauccacucauucauucacucauccacuca	chr9:95973765-95974013(+)$1	248	0	33	14.9868
ucaccaccaccaccacuacuacuaccaccauca	chr7:158233263-158233528(-)$1	265	0	33	14.9868
uccauccaucaauccauccauccauccauccau	chr9:116928625-116928912(+)$1	287	12	45	14.9868
cacacucacacucagacacacacagcucacaua	chr9:136802386-136802622(-)$1	236	31	64	14.9868
acacauccacagacacaaacauauacauauaua	chr7:157610523-157610771(-)$1	248	24	57	14.9868
cacacagacacacacccacagacacauacacuc	chr1:12644980-12645203(-)$1	223	178	211	14.9868
cacacccagucaccccacacacacaucacauac	chr4:7029234-7029542(+)$1	308	0	33	14.9868
acacgcacacacacacacacacacacacacaca	chr19:47507115-47507372(+)$1	257	55	88	14.9868
ccacuccauccacucuacccacucuucucucca	chr12:121433183-121433467(+)$1	284	7	40	14.9868
cuauauacacauacacacuccuauacacacacc	chr22:47399934-47400189(+)$1	255	97	130	14.9868
acaccacacaccuaccacacacaccacacaugc	chr7:157610801-157611082(-)$1	281	213	246	14.9868
aacucaaucucaaaacacacacacacacacaca	chr14:34912163-34912392(-)$1	229	0	33	14.9868
cauaccacacacacaccccacaccacacacaca	chr19:33949238-33949474(-)$1	236	0	33	14.9868
ccacaccacacUCAUACCUACCCCACACCACAC	chr10:16798643-16798980(-)$1	337	0	33	14.9868
cacccauucacccauccucccaccacccaccca	chr11:70701973-70702225(-)$1	252	0	33	14.9868
uacacacacucauacacucacacagacucacau	chr11:70482579-70482843(-)$1	264	127	160	14.9868
uuaccuguccguccauccauccauccaucaucc	chr11:63881004-63881258(-)$1	254	21	54	14.9868
cccauuuacccauccauccauccauccguccgu	chr22:44375838-44376095(+)$1	257	96	129	14.9868
cccacacacagcacacccacacacagcacaccu	chr7:157800554-157800775(-)$1	221	0	33	14.9868
acuuauccauccagccagccauccauucaucca	chr9:136736030-136736339(-)$1	309	0	33	14.9868
acacagccaacucacaccacucacacacacccc	chr17:78255396-78255677(+)$1	281	0	33	14.9868
ccauccauccauccaugcauccauccauccauc	chr2:218673777-218674019(-)$1	242	0	33	14.0799
aaacaccacauauauacauagacaccacagaua	chr1:230411427-230411681(+)$1	254	211	244	14.9868
Ccauauacacauauacacacacuccuauacaca	chr22:47400046-47400290(+)$1	244	93	126	14.9868
cacauguacacaccacacuccucacacacacac	chr21:46899473-46899719(+)$1	246	0	33	14.9868
ccaaucuaucuauccuccaucccuucacccauc	chr22:25903235-25903522(+)$1	287	37	70	14.9868
AUCUCAAUUCCCAUCCUAAAAAGCACUCAUACU	chr11:2153352-2153558(-)$1	206	172	205	14.9868
cacucacacacacccuuacccacacucacacac	chr6:158051986-158052239(+)$1	253	0	33	14.9868
ccaccacaccuacacaaauaccacauagacaca	chr16:46949145-46949381(+)$1	236	149	182	14.9868
cuauuacacacacacacacacacacacacacac	chrX:73393339-73393676(-)$1	337	96	129	14.9868
accaauccauccaauccauccauccauccaucc	chr1:19252095-19252401(-)$1	306	0	33	14.9868
cacuacacacaccacaccacauacacacaccac	chr12:57585429-57585723(+)$1	294	0	33	14.9868
acacacacaccacacaccacacguaccacaaac	chr12:57585815-57586051(+)$1	236	29	62	14.9868
ucacaccuuuacacacccacucacacacauacc	chr6:158052039-158052295(+)$1	256	0	33	14.9868
cauuuauccaucccauucgcuuacccauccauc	chr16:16265319-16265579(-)$1	260	0	33	14.9868
aacaaccaccaccaccaccaccacucccaccac	chr5:92826327-92826685(-)$1	358	12	45	14.9868
acaauacacaacauacacaaccacgcaauacac	chr19:6717507-6717736(-)$1	229	0	33	14.9868
agacuucucacacucacccccuccccucucacc	chr9:140615571-140615823(+)$1	252	211	244	14.9868
AACCACCCAGCCCCUCCAAacacacacacacac	chr17:40374124-40374410(-)$1	286	158	191	14.9868
Gcacucacaccacacacacaccacacgcucaca	chr21:46950247-46950514(-)$1	267	189	222	13.7480
acucaacacacacaucuacauauacccaacaca	chr17:55726342-55726587(+)$1	245	169	202	14.9868
acacacccaacacagauacaccaacacagacac	chr12:131502133-131502401(+)$1	268	60	93	14.9868
aucaccaucacuaucaccaccaucacuaccacu	chr7:158233585-158233858(-)$1	273	0	33	14.9868
acauacacacacaccacacauacaccacccauc	chr3:10407300-10407609(-)$1	309	54	87	14.9868
acacacaccccauauacacacaccacacacaca	chr8:38776022-38776272(+)$1	250	23	56	14.9868
ccuacacacacaccacacagacacaaacacacu	chr16:46949422-46949655(+)$1	233	0	33	14.9868

#DB
.................................	chr21:46575759-46575993(+)$1	1	0	33	14.9868
.................................	chr10:128815625-128815937(+)$1	1	0	33	14.9868
.................................	chr16:46949775-46949983(+)$1	1	0	33	14.9868
.................................	chr10:704824-705175(+)$1	1	133	166	14.9868
..........................(((....	chr11:2159433-2159637(-)$1	1	0	33	14.0799
.................................	chr16:81702944-81703201(+)$1	1	0	33	14.9868
.................................	chr20:62579834-62580076(-)$1	1	48	81	14.9868
.................................	chr12:123997384-123997698(-)$1	1	0	33	14.9868
.................................	chr14:104342038-104342275(-)$1	1	0	33	14.9868
.................................	chr21:46576111-46576404(+)$1	1	0	33	14.9868
.................................	chr12:122188410-122188706(+)$1	1	62	95	14.9868
.................................	chr12:57585604-57585882(+)$1	1	0	33	14.9868
.................................	chr8:141561748-141562053(-)$1	1	0	33	14.9868
.................................	chr1:12644707-12644927(-)$1	1	0	33	14.9868
.................................	chr6:159048026-159048255(+)$1	1	0	33	14.9868
.................................	chr16:4718870-4719160(+)$1	1	0	33	14.9868
.................................	chr6:158051404-158051753(+)$1	1	72	105	14.9868
.................................	chr12:131441966-131442225(+)$1	1	73	106	14.9868
.................................	chr19:7228771-7229029(-)$1	1	46	79	14.9868
.................................	chr9:136798716-136798966(-)$1	1	0	33	14.9868
.................................	chr19:4553121-4553439(-)$1	1	0	33	14.9868
.................................	chr2:3049703-3049953(-)$1	1	0	33	14.9868
.................................	chr11:63880839-63881132(-)$1	1	0	33	14.9868
.................................	chr1:16469490-16469789(-)$1	1	0	33	14.9868
.................................	chr19:6716951-6717171(-)$1	1	70	103	14.9868
.................................	chr22:32025310-32025610(-)$1	1	72	105	14.9868
.................................	chr16:46949536-46949747(+)$1	1	164	197	14.9868
.................................	chr9:95973765-95974013(+)$1	1	0	33	14.9868
.................................	chr7:158233263-158233528(-)$1	1	0	33	14.9868
.................................	chr9:116928625-116928912(+)$1	1	12	45	14.9868
.................................	chr9:136802386-136802622(-)$1	1	31	64	14.9868
.................................	chr7:157610523-157610771(-)$1	1	24	57	14.9868
.................................	chr1:12644980-12645203(-)$1	1	178	211	14.9868
.................................	chr4:7029234-7029542(+)$1	1	0	33	14.9868
.................................	chr19:47507115-47507372(+)$1	1	55	88	14.9868
.................................	chr12:121433183-121433467(+)$1	1	7	40	14.9868
.................................	chr22:47399934-47400189(+)$1	1	97	130	14.9868
.................................	chr7:157610801-157611082(-)$1	1	213	246	14.9868
.................................	chr14:34912163-34912392(-)$1	1	0	33	14.9868
.................................	chr19:33949238-33949474(-)$1	1	0	33	14.9868
.................................	chr10:16798643-16798980(-)$1	1	0	33	14.9868
.................................	chr11:70701973-70702225(-)$1	1	0	33	14.9868
.................................	chr11:70482579-70482843(-)$1	1	127	160	14.9868
.................................	chr11:63881004-63881258(-)$1	1	21	54	14.9868
.................................	chr22:44375838-44376095(+)$1	1	96	129	14.9868
.................................	chr7:157800554-157800775(-)$1	1	0	33	14.9868
.................................	chr9:136736030-136736339(-)$1	1	0	33	14.9868
.................................	chr17:78255396-78255677(+)$1	1	0	33	14.9868
................(((..............	chr2:218673777-218674019(-)$1	1	0	33	14.0799
.................................	chr1:230411427-230411681(+)$1	1	211	244	14.9868
.................................	chr22:47400046-47400290(+)$1	1	93	126	14.9868
.................................	chr21:46899473-46899719(+)$1	1	0	33	14.9868
.................................	chr22:25903235-25903522(+)$1	1	37	70	14.9868
.................................	chr11:2153352-2153558(-)$1	1	172	205	14.9868
.................................	chr6:158051986-158052239(+)$1	1	0	33	14.9868
.................................	chr16:46949145-46949381(+)$1	1	149	182	14.9868
.................................	chrX:73393339-73393676(-)$1	1	96	129	14.9868
.................................	chr1:19252095-19252401(-)$1	1	0	33	14.9868
.................................	chr12:57585429-57585723(+)$1	1	0	33	14.9868
.................................	chr12:57585815-57586051(+)$1	1	29	62	14.9868
.................................	chr6:158052039-158052295(+)$1	1	0	33	14.9868
.................................	chr16:16265319-16265579(-)$1	1	0	33	14.9868
.................................	chr5:92826327-92826685(-)$1	1	12	45	14.9868
.................................	chr19:6717507-6717736(-)$1	1	0	33	14.9868
.................................	chr9:140615571-140615823(+)$1	1	211	244	14.9868
.................................	chr17:40374124-40374410(-)$1	1	158	191	14.9868
)................................	chr21:46950247-46950514(-)$1	1	189	222	13.7480
.................................	chr17:55726342-55726587(+)$1	1	169	202	14.9868
.................................	chr12:131502133-131502401(+)$1	1	60	93	14.9868
.................................	chr7:158233585-158233858(-)$1	1	0	33	14.9868
.................................	chr3:10407300-10407609(-)$1	1	54	87	14.9868
.................................	chr8:38776022-38776272(+)$1	1	23	56	14.9868
.................................	chr16:46949422-46949655(+)$1	1	0	33	14.9868

#PSSM
: : 0.98	d : 0.01	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 0.98	C : 0.01	
: : 1.00	
: : 1.00	
: : 1.00	
: : 1.00	

#score	1090.9885227508246
#seq	73
#width	33
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF302FFF_LARP7_UTR_m2_run2.txt

#BEAR
hhhhhhh[cccnnnnnccc]hhhhhhh	chr18:47017933-47018192(-)$1	259	176	203	13.7222
==========oooooo===========	chr8:33370957-33371186(+)$1	229	23	50	12.3475
eee[bb[ddddnnnnndddd]bbeeee	chr17:8076687-8076921(-)$1	234	84	111	12.0576
""iiiiiiiiinnnnniiiiiiiii55	chr11:75111433-75111678(+)$1	245	62	89	15.4814
hhh[dddd[cccnnnnnccc]dddd]h	chr11:122929972-122930184(-)$1	212	152	179	14.5590
""iiiiiiiiinnnnniiiiiiiii55	chr11:75111331-75111633(+)$1	302	164	191	15.4814
hhh[dddd[cccnnnnnccc]dddd]h	chr11:122929940-122930172(-)$1	232	140	167	14.5590

#otherMatches

#Seq PSSM
AUUUAUACUGAAUGAGUUACUGUAAGU	chr18:47017933-47018192(-)$1	259	176	203	13.7222
AACUAUAAGAUgauccuuuuguaguuc	chr8:33370957-33371186(+)$1	229	23	50	12.3475
gcaugaaacgugauuaacgucucugcg	chr17:8076687-8076921(-)$1	234	84	111	12.0576
CUCUGUGCUGCGUUCUGUGGCACAGUU	chr11:75111433-75111678(+)$1	245	62	89	15.4814
AAACAGGAGCUAUGUACUGGGUUUUCU	chr11:122929972-122930184(-)$1	212	152	179	14.5590
CUCUGUGCUGCGUUCUGUGGCACAGUU	chr11:75111331-75111633(+)$1	302	164	191	15.4814
AAACAGGAGCUAUGUACUGGGUUUUCU	chr11:122929940-122930172(-)$1	232	140	167	14.5590

#DB
(((((((.(((.....))).)))))))	chr18:47017933-47018192(-)$1	1	176	203	13.7222
((((((((((......))))))))))(	chr8:33370957-33371186(+)$1	1	23	50	12.3475
(((.((.((((.....)))).))))))	chr17:8076687-8076921(-)$1	1	84	111	12.0576
..(((((((((.....)))))))))..	chr11:75111433-75111678(+)$1	1	62	89	15.4814
(((.((((.(((.....))).)))).)	chr11:122929972-122930184(-)$1	1	152	179	14.5590
..(((((((((.....)))))))))..	chr11:75111331-75111633(+)$1	1	164	191	15.4814
(((.((((.(((.....))).)))).)	chr11:122929940-122930172(-)$1	1	140	167	14.5590

#PSSM
h : 0.42	" : 0.28	= : 0.14	e : 0.14	
h : 0.42	" : 0.28	= : 0.14	e : 0.14	
h : 0.42	i : 0.28	= : 0.14	e : 0.14	
[ : 0.42	i : 0.28	h : 0.14	= : 0.14	
i : 0.28	d : 0.28	h : 0.14	= : 0.14	b : 0.14	
i : 0.28	d : 0.28	h : 0.14	= : 0.14	b : 0.14	
i : 0.28	d : 0.28	h : 0.14	= : 0.14	[ : 0.14	
d : 0.42	i : 0.28	[ : 0.14	= : 0.14	
i : 0.28	[ : 0.28	c : 0.14	= : 0.14	d : 0.14	
c : 0.42	i : 0.28	= : 0.14	d : 0.14	
c : 0.42	i : 0.28	o : 0.14	d : 0.14	
n : 0.57	c : 0.28	o : 0.14	
n : 0.85	o : 0.14	
n : 0.85	o : 0.14	
n : 0.85	o : 0.14	
n : 0.85	o : 0.14	
i : 0.28	n : 0.28	c : 0.14	= : 0.14	d : 0.14	
c : 0.42	i : 0.28	= : 0.14	d : 0.14	
c : 0.42	i : 0.28	= : 0.14	d : 0.14	
i : 0.28	c : 0.28	] : 0.14	= : 0.14	d : 0.14	
] : 0.42	i : 0.28	h : 0.14	= : 0.14	
i : 0.28	d : 0.28	h : 0.14	= : 0.14	b : 0.14	
i : 0.28	d : 0.28	h : 0.14	= : 0.14	b : 0.14	
i : 0.28	d : 0.28	h : 0.14	= : 0.14	e : 0.14	
i : 0.28	d : 0.28	h : 0.14	= : 0.14	e : 0.14	
5 : 0.28	] : 0.28	h : 0.14	= : 0.14	e : 0.14	
h : 0.42	5 : 0.28	= : 0.14	e : 0.14	

#score	98.2084581387571
#seq	7
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF265RIO_FASTKD2_UTR_m1_run1.txt

#BEAR
cc!!dddd[ccc"""ddddmmmmdddd4444ccc22dddd	chr10:121341870-121342115(-)$1	245	155	195	11.4768
::::===============mmmm===============:d	chr12:62919644-62919980(+)$1	336	242	282	10.6185
##==========####cccmmmmccc55555=========	chr15:93568470-93568791(+)$1	321	244	284	12.5930
ddcccffffff]ccc:cccmmmmccc==========[ccc	chr3:128840308-128840628(-)$1	320	174	214	11.9028
ccc"""ccc[eeeee!!bbmmmmbb22eeeee]ccc333c	chr5:176980204-176980472(-)$1	268	151	191	13.2115
[ccc[eeeee[bbffffffmmmmffffff22bb]eeeee2	chr19:54041190-54041448(+)$1	258	144	184	10.8288
dddd[dddd[ffffffbboooooobb]ffffff]dddd]d	chr12:76443430-76443654(-)$1	224	70	110	10.3354
=====!!bb####bb!!bbmmmmbb22bb333bb22====	chr17:45773171-45773414(+)$1	243	11	51	13.5802
bba[eeeee"""bbccc[bbmmmmbb]ccc]bbeeeee]a	chr2:28974736-28974994(+)$1	258	125	165	10.8328
ccbb[ffffff[dddd[ccclllccc4444dddd333fff	chr12:125398892-125399136(-)$1	244	67	107	11.5730
b[a!!bb[ccc[ccc!!bb[allla]bb22ccc]cccbb2	chr5:137688313-137688667(+)$1	354	128	168	10.1840
ffffff!!dddd[ccccccmmmmccc22ccc]dddd333f	chr17:73997298-73997555(+)$1	257	74	114	12.4682
=======[bbccc[bb[ammmma]bb]ccc]bb22=====	chr12:132402699-132403001(+)$1	302	107	147	12.7489
ffabb$$$$$ffffffcccmmmmccc]ffffffbb]a]ff	chr1:201123359-201123658(-)$1	299	212	252	10.7006
!!bb[bb[ffffff!!bboooooobb333ffffff]bb]b	chr6:170123960-170124248(-)$1	288	68	108	12.3008
bb[ccc!!ddddbbcccooooooccc]bb22dddd]ccc]	chr7:77166654-77166918(+)$1	264	154	194	11.2207
cccffffff[eeeee!!ccclllccceeeeeffffff]cc	chr19:1104614-1104883(+)$1	269	54	94	11.0365
gffffff[ccc[bbcccooooooccc4444bbccc]ffff	chr19:8538950-8539224(+)$1	274	60	100	12.4214
==========[cccvvvvvvvvvvvvvccc]=========	chr2:97525493-97525817(-)$1	324	190	230	10.2486
fffffeeeeecccffffffmmmmffffff4444ccc22ee	chr17:35687014-35687272(-)$1	258	204	244	10.8873
[bb!!bb[a[ffffff[bbnnnnnbb]ffffffa]bb22b	chr16:30935307-30935576(+)$1	269	122	162	10.7545
mffffffbb[iiiiiiiiimmmmiiiiiiiiibbffffff	chr5:43291021-43291271(-)$1	250	134	174	10.7546
!ccc!!a[ccc[dddd!!aooooooa22dddd]ccc]a55	chr7:77166718-77166977(+)$1	259	93	133	11.3105
ggggggg####ccc!!bbnnnnnbb22ccc4444gggggg	chr12:104341337-104341559(+)$1	222	167	207	12.8316
!!==========="""cccmmmmccc===========22f	chr4:763932-764221(-)$1	289	188	228	16.0831
gggg===========[cccmmmmccc22===========8	chr3:184102284-184102582(+)$1	298	67	107	15.4350
bccc[ccc"""eeeee[annnnna]eeeee4444cccccc	chr17:74380013-74380280(+)$1	267	191	231	11.3531
[ccca[ffffffa[cccbbmmmmbb]ccc]a]ffffff]a	chr17:7477029-7477290(+)$1	261	167	207	12.6434
"a[eeeee####bb!!bboooooobb22bbeeeee]a22d	chr9:117044469-117044698(+)$1	229	138	178	12.2730
[ccc[a[ccc[gggggggnnnnnggggggg22ccc]a]cc	chr7:27153331-27153580(-)$1	249	25	65	12.6235
ccc!!bb[eeeee[eeeeemmmmeeeee]eeeee]bb22c	chr11:18034120-18034395(-)$1	275	0	40	10.9042
[dddd[eeeee"""cccooooooccc333eeeee22dddd	chr9:116997788-116998032(+)$1	244	59	99	12.2526
[eeeee[a$$$$$ffffffmmmmffffff333a]eeeee]	chr15:28508131-28508416(-)$1	285	67	107	11.1727
!!eeeee[ccc"""eeeeemmmmeeeeeccc]eeeee22b	chr17:62499546-62499769(-)$1	223	70	110	11.6000
[bb[ccc[eeeee!!eeeeellleeeee22eeeee]ccc]	chr8:71314499-71314724(-)$1	225	132	172	10.4705
[ccc[dddd[ccc[aooooooa]cccdddd]cccbb]ccc	chr9:117044635-117044851(+)$1	216	114	154	10.1331
gggggccc[ccc[cccccclllccc22ccc]cccccc]gg	chr2:54197821-54198044(-)$1	223	155	195	13.0500
!!a!!dddd"""a[a!!bbmmmmbb22a]a4444dddd]a	chr19:10221639-10221943(+)$1	304	16	56	14.0408
[a[bb[a[eeeee!!a[ammmma]a22eeeee]a]bb]a]	chr9:139743356-139743598(+)$1	242	14	54	11.8799
iiiiiiii===========nnnnn===========bb[cc	chr16:447997-448255(+)$1	258	75	115	13.0448
!!gggggggiiiiiiiii[annnnna]iiiiiiiii333g	chr7:1577298-1577593(+)$1	295	129	169	12.5238
ee####eeeee!!dddd[aooooooa]ddddeeeeeeeee	chr16:66783065-66783317(-)$1	252	201	241	10.3990
ddffffffccc[gggggggmmmmggggggg]cccddddoo	chr17:73233951-73234189(-)$1	238	165	205	11.1881
"a[eeeee####bb!!bboooooobb22bbeeeee]a22d	chr9:117044498-117044709(+)$1	211	109	149	12.2730
[==========a[dddd[aooooooa]dddd]a22=====	chr1:161087990-161088280(+)$1	290	102	142	13.2916
e"""ddddccc!!eeeeennnnneeeee333ccc333ddd	chr17:48823804-48824030(+)$1	226	4	44	10.7816
""ccc[a[bb$$$$$cccnnnnnccc4444bb]a]ccc44	chr15:64752854-64753156(+)$1	302	11	51	12.2868
[ccc"""eeeeebb"""bbmmmmbb333bb]eeeee]ccc	chr16:448084-448343(+)$1	259	180	220	13.2721
ccccca[ffffffa[cccbbmmmmbb]ccc]a]ffffff]	chr17:7477169-7477400(+)$1	231	26	66	11.4343
iiiiiii!!ffffff[ccclllcccffffff4444iiiii	chr10:21823278-21823534(+)$1	256	9	49	12.7439
d[gggggggccc!!a[cccmmmmccc]a22ccc22ggggg	chr17:74380113-74380342(+)$1	229	125	165	13.8394
ggggggg[bb!!ggggggglllggggggg22bbggggggg	chr20:62330411-62330648(-)$1	237	86	126	11.7580
###ccc[ccc!!gggggggmmmmggggggg22ccc]ccc4	chr9:38620196-38620519(-)$1	323	63	103	13.5041
=======[ffffff[ddddmmmmdddd]ffffff22====	chr5:86563951-86564223(+)$1	272	137	177	12.1894
&dddd!!ccc!!bb"""bbmmmmbb4444bb4444ccc22	chr12:57504849-57505154(-)$1	305	215	255	12.4167
[ccc[bb[ccc[ccc[cccmmmmccc]ccc]ccc]bbccc	chr14:21549699-21549937(+)$1	238	65	105	14.7052

#otherMatches

#Seq PSSM
AGGAUGAUGGCACCUUAUGAGUACAUAUAUUUGCAUGUCA	chr10:121341870-121342115(-)$1	245	155	195	11.4768
GUAGUAGCAGCAUUAUUUUAUAAGGAAUGAUGUUGUUGGG	chr12:62919644-62919980(+)$1	336	242	282	10.6185
UGUGAGUGAGGCAACACUGAUGCCAGCAUGGGUCUUACUU	chr15:93568470-93568791(+)$1	321	244	284	12.5930
GCGGCGGCUCCACGUAGCCAGGCGGCCCGUGGGCUGGAGC	chr3:128840308-128840628(-)$1	320	174	214	11.9028
GUCGGAUGCGGCGCCGGAUGAGGAUGAGGCGUGGCGGAAG	chr5:176980204-176980472(-)$1	268	151	191	13.2115
GGCCGCUGGGUGCGCGUGCGCAUGCGCGCUGGCCUCCAGG	chr19:54041190-54041448(+)$1	258	144	184	10.8288
CGCUGUUUUUCCUUUUCAGUAUGAUGAAGAAGGUGAAGAA	chr12:76443430-76443654(-)$1	224	70	110	10.3354
GCCGGCCUGGCUUACUUGUCCCUACUUGUCAACACCCUGG	chr17:45773171-45773414(+)$1	243	11	51	13.5802
GGGGGAGUUGGAGCCGGGGUCGAAACGCCGCGUGACUUGU	chr2:28974736-28974994(+)$1	258	125	165	10.8328
AGGCGUGUGGAGAGACCGCCAAGGGCUGUAGUCUGGGUCC	chr12:125398892-125399136(-)$1	244	67	107	11.5730
ugggaggcggcgggcgggagcgcgggucaggccggccccg	chr5:137688313-137688667(+)$1	354	128	168	10.1840
GCCUUGGGAGCUGGGCAGUcugggcugggcugggcugggc	chr17:73997298-73997555(+)$1	257	74	114	12.4682
CAGCCCUUGGCCUGAGGUGGGGAGCUGGGGACUUGGGGGU	chr12:132402699-132403001(+)$1	302	107	147	12.7489
CACCCAAAAGUUCCCGUCGGGCCCGAGCGGGGAGGAGCUG	chr1:201123359-201123658(-)$1	299	212	252	10.7006
aggggccggcccccgggcgggcgggcggagggggcggggc	chr6:170123960-170124248(-)$1	288	68	108	12.3008
ccgggcgggcgggcggcgggggggccAGCGACCGCAGCCG	chr7:77166654-77166918(+)$1	264	154	194	11.2207
GGCCCUUUGUCCCCGCUAGCGGCGCUCGGGGUGGGGGAGC	chr19:1104614-1104883(+)$1	269	54	94	11.0365
GUCUUGUUGGAUGAUGCUGAAAUGUGAACCUCUCUUGCAG	chr19:8538950-8539224(+)$1	274	60	100	12.4214
GGAGAGGGUGGGCCUGCUGUGGACAAUGGCAUACUCUCUU	chr2:97525493-97525817(-)$1	324	190	230	10.2486
GUUUUGCUGAUUAUGUUCUGAAAAGAGCAAGGAUGAUUUC	chr17:35687014-35687272(-)$1	258	204	244	10.8873
GGGACUCGGACCCGGGACUGAGUGGGCCCCGGGCAGAAGC	chr16:30935307-30935576(+)$1	269	122	162	10.7545
AGGAUUACAUGUUAUGUAAAUUUUUAUGUGACUGACAUGG	chr5:43291021-43291271(-)$1	250	134	174	10.7546
ggcgggcgggcggcgggggggccAGCGACCGCAGCCGGGG	chr7:77166718-77166977(+)$1	259	93	133	11.3105
GGGAGAGACUUGUUUUGGAUGCCCCCUAAUCCCCUUCUCC	chr12:104341337-104341559(+)$1	222	167	207	12.8316
AGCGUACACAUAUGUAGCAUGCAUGUGUGUGUGUGCGGCC	chr4:763932-764221(-)$1	289	188	228	16.0831
GCCCGAGGGGCUCAUAUGCUGCUGCAGAAUGAGCUCUUCC	chr3:184102284-184102582(+)$1	298	67	107	15.4350
GGCUAGGGCAGAGCGCGCAAAAGGGGCGCUGCAUCCCGGC	chr17:74380013-74380280(+)$1	267	191	231	11.3531
GGCGGGACUUCCAGCGCGCUGGUGCUGCGGUGGGAGGUGC	chr17:7477029-7477290(+)$1	261	167	207	12.6434
AAGGUAGGUGUCCCCUUCUGACUUGAUAGGCCUGCGUCCC	chr9:117044469-117044698(+)$1	229	138	178	12.2730
GGCCGCGGCUGCUGCCCUCgggaagggcagggggcggggg	chr7:27153331-27153580(-)$1	249	25	65	12.6235
CCGAGCCGGGCUCUGGGUUGAAGGAUCCUGGGCUgggagc	chr11:18034120-18034395(-)$1	275	0	40	10.9042
AUUGUAACCUUCUUUGCUGGUGUGUACUUAGGGUGAACAA	chr9:116997788-116998032(+)$1	244	59	99	12.2526
GUUGUUGUUAUUUAAAUGCAUUUGUAUUUUUUAGGGCAAG	chr15:28508131-28508416(-)$1	285	67	107	11.1727
CUUUCCUUAGUGUUUGGUGCUGGCACCAACUCGGGAACUG	chr17:62499546-62499769(-)$1	223	70	110	11.6000
GUCCGUCACUGGUAGGGGAAACUUUCCCAAACCAGAGACC	chr8:71314499-71314724(-)$1	225	132	172	10.4705
AUCAAGGACAGCUGGGUGAGAUGGGCGUCCCUGGAGACCC	chr9:117044635-117044851(+)$1	216	114	154	10.1331
gcccccggagccgggcgggcgucccgagccgggcccgcgg	chr2:54197821-54198044(-)$1	223	155	195	13.0500
AAGUCUCCAGGGCGGAAGCGGAAGCGGUGGGAAAUGGAUC	chr19:10221639-10221943(+)$1	304	16	56	14.0408
GGGCGGUGGAGGGGGUGGAGAGCGAGGCCUUCGGGCGGUG	chr9:139743356-139743598(+)$1	242	14	54	11.8799
GCUCUGUCCAGAUUCUGUGGGACAUACAGGGUCUGGGCUC	chr16:447997-448255(+)$1	258	75	115	13.0448
GGCUCCCUGGCCCAGGGUGUGGGGAGGGUCCUGGGCUGGC	chr7:1577298-1577593(+)$1	295	129	169	12.5238
UGAUGAGGACCGAGAUGGUGAGUGAAGCAUUGGUCCCAUG	chr16:66783065-66783317(-)$1	252	201	241	10.3990
CACUGGGGUGGGGGUCUCUAAAGAGAGACUGUCAUGGGUC	chr17:73233951-73234189(-)$1	238	165	205	11.1881
AAGGUAGGUGUCCCCUUCUGACUUGAUAGGCCUGCGUCCC	chr9:117044498-117044709(+)$1	211	109	149	12.2730
AGGGUGGAGGGCGGGGCGCGGCUUGGGGCCUGGGUUCCUU	chr1:161087990-161088280(+)$1	290	102	142	13.2916
UUUUGCCUAGUCUUGUUAAUUAAUAGCAUCUACUCCAAGG	chr17:48823804-48824030(+)$1	226	4	44	10.7816
gaggcgcggggagggggcagagagccagagccggagccgg	chr15:64752854-64753156(+)$1	302	11	51	12.2868
AGCGACAGGCCUUGAAACUCCACAGCAGCACAGGCCCCGU	chr16:448084-448343(+)$1	259	180	220	13.2721
GGGCGGGACUUCCAGCGCGCUGGUGCUGCGGUGGGAGGUG	chr17:7477169-7477400(+)$1	231	26	66	11.4343
CUCUCCGGGCGCCCGCGUUAGCGGCCGGGUGGAGGUGGGG	chr10:21823278-21823534(+)$1	256	9	49	12.7439
CCCGGCGCCGACAGCACCCGCGGGGGCGAGGUCGUGGCGU	chr17:74380113-74380342(+)$1	229	125	165	13.8394
GGUUCCCAGGACCUGGGGGGGACCUCCAGCCCCGGGAACC	chr20:62330411-62330648(-)$1	237	86	126	11.7580
GAGCUACAUUGCGGGUUUGGGGGUGGAUCUUGGAUUUGGG	chr9:38620196-38620519(-)$1	323	63	103	13.5041
GAGCCUGGGCUGUGGCCCUAGGAGGGGGCGCGGCGGCGGG	chr5:86563951-86564223(+)$1	272	137	177	12.1894
GGGAGAAGACAGCAGAGGGGUUGCCGAGGUGAGGGGUUGC	chr12:57504849-57505154(-)$1	305	215	255	12.4167
AGCCCAGUGCCGGCACCUUCCAGGAGAUGCGGGCCCUGGC	chr14:21549699-21549937(+)$1	238	65	105	14.7052

#DB
((..((((.(((...((((....))))....)))..))))	chr10:121341870-121342115(-)$1	1	155	195	11.4768
....(((((((((((((((....))))))))))))))).(	chr12:62919644-62919980(+)$1	1	242	282	10.6185
..((((((((((....(((....))).....)))))))))	chr15:93568470-93568791(+)$1	1	244	284	12.5930
))))))))))).))).(((....)))((((((((((.(((	chr3:128840308-128840628(-)$1	1	174	214	11.9028
(((...(((.(((((..((....))..))))).)))...)	chr5:176980204-176980472(-)$1	1	151	191	13.2115
.(((.(((((.((((((((....))))))..)).))))).	chr19:54041190-54041448(+)$1	1	144	184	10.8288
((((.((((.((((((((......)).)))))).)))).)	chr12:76443430-76443654(-)$1	1	70	110	10.3354
(((((..((....((..((....))..))...))..))))	chr17:45773171-45773414(+)$1	1	11	51	13.5802
))(.(((((...(((((.((....)).))).))))))).)	chr2:28974736-28974994(+)$1	1	125	165	10.8328
))((.((((((.((((.(((...)))....))))...)))	chr12:125398892-125399136(-)$1	1	67	107	11.5730
(.(..((.(((.(((..((.(...).))..))).))))).	chr5:137688313-137688667(+)$1	1	128	168	10.1840
((((((..((((.((((((....)))..))).))))...)	chr17:73997298-73997555(+)$1	1	74	114	12.4682
(((((((.(((((.((.(....).)).))).))..)))))	chr12:132402699-132403001(+)$1	1	107	147	12.7489
(((((.....(((((((((....))).)))))))).).))	chr1:201123359-201123658(-)$1	1	212	252	10.7006
..((.((.((((((..((......))...)))))).)).)	chr6:170123960-170124248(-)$1	1	68	108	12.3008
((.(((..(((((((((......))).))..)))).))).	chr7:77166654-77166918(+)$1	1	154	194	11.2207
(((((((((.(((((..(((...)))))))))))))).))	chr19:1104614-1104883(+)$1	1	54	94	11.0365
)((((((.(((.(((((......)))....))))).))))	chr19:8538950-8539224(+)$1	1	60	100	12.4214
((((((((((.(((.............))).)))))))))	chr2:97525493-97525817(-)$1	1	190	230	10.2486
(((((((((((((((((((....))))))....)))..))	chr17:35687014-35687272(-)$1	1	204	244	10.8873
.((..((.(.((((((.((.....)).))))))).))..)	chr16:30935307-30935576(+)$1	1	122	162	10.7545
.))))))((.(((((((((....)))))))))))((((((	chr5:43291021-43291271(-)$1	1	134	174	10.7546
.(((..(.(((.((((..(......)..)))).))).)..	chr7:77166718-77166977(+)$1	1	93	133	11.3105
(((((((....(((..((.....))..)))....))))))	chr12:104341337-104341559(+)$1	1	167	207	12.8316
..(((((((((((...(((....))))))))))))))..)	chr4:763932-764221(-)$1	1	188	228	16.0831
(((((((((((((((.(((....)))..))))))))))).	chr3:184102284-184102582(+)$1	1	67	107	15.4350
((((.(((...(((((.(.....).)))))....))))))	chr17:74380013-74380280(+)$1	1	191	231	11.3531
.((((.(((((((.(((((....)).))).).)))))).)	chr17:7477029-7477290(+)$1	1	167	207	12.6434
.(.(((((....((..((......))..))))))).)..)	chr9:117044469-117044698(+)$1	1	138	178	12.2730
.(((.(.(((.(((((((.....)))))))..))).).))	chr7:27153331-27153580(-)$1	1	25	65	12.6235
(((..((.(((((.(((((....))))).))))).))..)	chr11:18034120-18034395(-)$1	1	0	40	10.9042
.((((.(((((...(((......)))...)))))..))))	chr9:116997788-116998032(+)$1	1	59	99	12.2526
.(((((.(.....((((((....))))))...).))))).	chr15:28508131-28508416(-)$1	1	67	107	11.1727
..(((((.(((...(((((....)))))))).)))))..)	chr17:62499546-62499769(-)$1	1	70	110	11.6000
.((.(((.(((((..(((((...)))))..))))).))).	chr8:71314499-71314724(-)$1	1	132	172	10.4705
.(((.((((.(((.(......).))))))).))))).)))	chr9:117044635-117044851(+)$1	1	114	154	10.1331
((((((((.(((.((((((...)))..))).)))))).))	chr2:54197821-54198044(-)$1	1	155	195	13.0500
..(..((((...(.(..((....))..).)....)))).)	chr19:10221639-10221943(+)$1	1	16	56	14.0408
.(.((.(.(((((..(.(....).)..))))).).)).).	chr9:139743356-139743598(+)$1	1	14	54	11.8799
))))))))(((((((((((.....)))))))))))((.((	chr16:447997-448255(+)$1	1	75	115	13.0448
..((((((((((((((((.(.....).)))))))))...)	chr7:1577298-1577593(+)$1	1	129	169	12.5238
((....(((((..((((.(......).)))))))))))))	chr16:66783065-66783317(-)$1	1	201	241	10.3990
))))))))(((.(((((((....))))))).)))((((..	chr17:73233951-73234189(-)$1	1	165	205	11.1881
.(.(((((....((..((......))..))))))).)..)	chr9:117044498-117044709(+)$1	1	109	149	12.2730
.(((((((((((.((((.(......).)))).)..)))))	chr1:161087990-161088280(+)$1	1	102	142	13.2916
(...(((((((..(((((.....)))))...)))...)))	chr17:48823804-48824030(+)$1	1	4	44	10.7816
..(((.(.((.....(((.....)))....)).).)))..	chr15:64752854-64753156(+)$1	1	11	51	12.2868
.(((...(((((((...((....))...)).))))).)))	chr16:448084-448343(+)$1	1	180	220	13.2721
))((((.(((((((.(((((....)).))).).)))))).	chr17:7477169-7477400(+)$1	1	26	66	11.4343
(((((((..((((((.(((...)))))))))....)))))	chr10:21823278-21823534(+)$1	1	9	49	12.7439
(.((((((((((..(.(((....))).)..)))..)))))	chr17:74380113-74380342(+)$1	1	125	165	13.8394
(((((((.((..(((((((...)))))))..)))))))))	chr20:62330411-62330648(-)$1	1	86	126	11.7580
...(((.(((..(((((((....)))))))..))).))).	chr9:38620196-38620519(-)$1	1	63	103	13.5041
(((((((.((((((.((((....)))).))))))..))))	chr5:86563951-86564223(+)$1	1	137	177	12.1894
.((((..(((..((...((....))....))....)))..	chr12:57504849-57505154(-)$1	1	215	255	12.4167
.(((.((.(((.(((.(((....))).))).))).)))))	chr14:21549699-21549937(+)$1	1	65	105	14.7052

#PSSM
[ : 0.21	c : 0.10	! : 0.10	g : 0.08	d : 0.07	= : 0.07	b : 0.07	f : 0.05	" : 0.05	# : 0.03	i : 0.03	e : 0.03	: : 0.01	m : 0.01	& : 0.01	
c : 0.24	d : 0.08	= : 0.08	f : 0.08	! : 0.08	b : 0.07	g : 0.07	a : 0.05	# : 0.03	[ : 0.03	e : 0.03	i : 0.03	" : 0.03	: : 0.01	
c : 0.24	= : 0.12	g : 0.10	f : 0.08	a : 0.07	b : 0.07	[ : 0.07	d : 0.05	e : 0.03	i : 0.03	# : 0.03	! : 0.01	: : 0.01	" : 0.01	
c : 0.23	= : 0.12	f : 0.10	g : 0.10	! : 0.08	b : 0.07	e : 0.07	d : 0.05	" : 0.03	[ : 0.03	i : 0.03	: : 0.01	# : 0.01	
= : 0.16	[ : 0.14	c : 0.10	f : 0.10	e : 0.08	! : 0.08	g : 0.08	d : 0.07	" : 0.03	b : 0.03	i : 0.03	a : 0.01	# : 0.01	
= : 0.14	f : 0.12	e : 0.12	d : 0.08	b : 0.08	c : 0.08	g : 0.07	[ : 0.07	! : 0.05	" : 0.03	a : 0.03	i : 0.03	$ : 0.01	# : 0.01	
= : 0.14	e : 0.14	f : 0.12	d : 0.08	b : 0.08	c : 0.07	! : 0.07	g : 0.07	[ : 0.07	a : 0.05	i : 0.03	$ : 0.01	" : 0.01	
[ : 0.24	e : 0.14	= : 0.10	f : 0.10	c : 0.10	d : 0.08	! : 0.05	b : 0.03	g : 0.03	$ : 0.01	# : 0.01	a : 0.01	i : 0.01	
c : 0.19	e : 0.16	= : 0.12	f : 0.12	d : 0.08	b : 0.08	# : 0.05	[ : 0.03	$ : 0.03	g : 0.03	a : 0.01	" : 0.01	! : 0.01	
c : 0.23	e : 0.14	= : 0.12	f : 0.12	[ : 0.10	# : 0.07	" : 0.05	b : 0.05	d : 0.03	$ : 0.03	i : 0.01	
c : 0.23	f : 0.17	e : 0.14	= : 0.10	# : 0.07	[ : 0.05	" : 0.05	! : 0.05	d : 0.03	i : 0.03	$ : 0.03	
c : 0.14	f : 0.14	e : 0.12	[ : 0.10	= : 0.08	! : 0.08	" : 0.07	# : 0.05	d : 0.03	i : 0.03	$ : 0.03	] : 0.01	b : 0.01	g : 0.01	a : 0.01	
c : 0.14	b : 0.14	f : 0.12	e : 0.10	= : 0.07	g : 0.07	" : 0.05	[ : 0.05	! : 0.05	# : 0.03	d : 0.03	i : 0.03	a : 0.03	$ : 0.03	
f : 0.16	b : 0.14	c : 0.12	[ : 0.08	" : 0.07	e : 0.07	d : 0.07	g : 0.07	= : 0.05	! : 0.05	i : 0.03	# : 0.01	$ : 0.01	a : 0.01	
c : 0.17	f : 0.12	e : 0.10	! : 0.10	" : 0.07	d : 0.07	g : 0.07	= : 0.05	a : 0.05	b : 0.03	i : 0.03	[ : 0.03	# : 0.01	v : 0.01	$ : 0.01	
! : 0.16	c : 0.16	d : 0.10	f : 0.10	e : 0.08	[ : 0.07	g : 0.07	" : 0.05	= : 0.03	i : 0.03	# : 0.01	: : 0.01	b : 0.01	v : 0.01	o : 0.01	a : 0.01	
c : 0.30	! : 0.10	b : 0.08	[ : 0.08	d : 0.07	g : 0.07	e : 0.07	f : 0.05	= : 0.03	i : 0.03	" : 0.03	v : 0.01	o : 0.01	
c : 0.24	b : 0.23	o : 0.07	g : 0.07	e : 0.07	f : 0.05	[ : 0.05	a : 0.05	d : 0.03	= : 0.03	i : 0.03	v : 0.01	! : 0.01	
c : 0.21	b : 0.17	o : 0.14	n : 0.08	f : 0.05	a : 0.05	e : 0.05	g : 0.05	d : 0.03	= : 0.03	m : 0.03	v : 0.01	i : 0.01	[ : 0.01	
m : 0.48	o : 0.19	n : 0.12	l : 0.05	b : 0.03	c : 0.03	[ : 0.01	v : 0.01	e : 0.01	a : 0.01	
m : 0.51	o : 0.19	n : 0.14	l : 0.10	a : 0.01	v : 0.01	
m : 0.51	o : 0.17	n : 0.14	l : 0.12	v : 0.01	a : 0.01	
m : 0.48	o : 0.17	n : 0.14	l : 0.07	a : 0.03	c : 0.03	v : 0.01	] : 0.01	g : 0.01	
c : 0.30	b : 0.12	o : 0.12	g : 0.07	e : 0.07	f : 0.05	n : 0.05	d : 0.03	m : 0.03	] : 0.03	= : 0.01	l : 0.01	v : 0.01	i : 0.01	a : 0.01	
c : 0.30	b : 0.26	g : 0.07	e : 0.07	f : 0.05	o : 0.05	d : 0.03	= : 0.03	a : 0.03	v : 0.01	i : 0.01	] : 0.01	n : 0.01	
c : 0.26	b : 0.14	2 : 0.10	e : 0.08	f : 0.07	a : 0.07	g : 0.07	d : 0.03	= : 0.03	] : 0.03	v : 0.01	i : 0.01	3 : 0.01	4 : 0.01	
] : 0.21	2 : 0.19	e : 0.10	= : 0.07	f : 0.07	4 : 0.07	g : 0.07	d : 0.05	3 : 0.05	5 : 0.01	b : 0.01	v : 0.01	i : 0.01	c : 0.01	
e : 0.14	c : 0.14	f : 0.12	4 : 0.08	2 : 0.08	= : 0.07	g : 0.07	b : 0.05	3 : 0.05	d : 0.05	i : 0.03	a : 0.03	5 : 0.01	] : 0.01	
c : 0.17	f : 0.14	4 : 0.08	= : 0.08	b : 0.08	e : 0.07	d : 0.07	g : 0.07	2 : 0.05	3 : 0.05	i : 0.03	] : 0.03	5 : 0.01	
c : 0.16	e : 0.10	2 : 0.10	f : 0.10	4 : 0.08	= : 0.08	d : 0.07	b : 0.07	3 : 0.05	g : 0.05	i : 0.03	5 : 0.01	] : 0.01	a : 0.01	
] : 0.16	e : 0.14	f : 0.10	4 : 0.08	= : 0.08	2 : 0.08	d : 0.07	c : 0.07	3 : 0.05	b : 0.05	i : 0.03	5 : 0.01	a : 0.01	
e : 0.16	c : 0.14	= : 0.12	b : 0.10	f : 0.10	4 : 0.10	] : 0.07	d : 0.05	3 : 0.03	i : 0.03	2 : 0.03	a : 0.01	
c : 0.19	e : 0.14	= : 0.12	f : 0.12	b : 0.10	4 : 0.10	] : 0.08	d : 0.05	a : 0.03	i : 0.01	
c : 0.21	e : 0.16	= : 0.12	f : 0.08	4 : 0.08	] : 0.07	b : 0.05	d : 0.05	2 : 0.05	a : 0.05	i : 0.01	g : 0.01	
c : 0.16	e : 0.16	2 : 0.12	= : 0.12	d : 0.08	f : 0.08	] : 0.08	3 : 0.03	b : 0.03	g : 0.03	4 : 0.03	i : 0.01	
] : 0.16	= : 0.14	c : 0.14	e : 0.10	b : 0.10	2 : 0.07	d : 0.07	f : 0.07	g : 0.05	3 : 0.03	i : 0.03	
= : 0.16	c : 0.14	b : 0.10	d : 0.08	3 : 0.08	e : 0.08	f : 0.08	a : 0.07	] : 0.05	g : 0.05	[ : 0.01	2 : 0.01	i : 0.01	
c : 0.17	= : 0.14	2 : 0.12	d : 0.10	f : 0.08	] : 0.08	e : 0.07	3 : 0.05	g : 0.05	b : 0.03	a : 0.01	[ : 0.01	i : 0.01	
c : 0.19	= : 0.12	2 : 0.12	] : 0.08	f : 0.08	e : 0.07	g : 0.07	d : 0.05	3 : 0.05	: : 0.01	b : 0.01	5 : 0.01	a : 0.01	o : 0.01	4 : 0.01	i : 0.01	
c : 0.17	d : 0.12	= : 0.10	f : 0.10	] : 0.08	g : 0.08	2 : 0.05	a : 0.05	b : 0.05	e : 0.03	4 : 0.03	5 : 0.01	8 : 0.01	o : 0.01	i : 0.01	

#score	674.3904590000192
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF034YUT_FTO_transcript_m3_run1.txt

#BEAR
f!!a[cccbbmmmmbb]cccaffff	chr20:389134-389359(+)$1	225	101	126	13.5112
b[adddd[bbmmmmbb]dddd]a]b	chr19:14200693-14200955(-)$1	262	99	124	12.5282
eee[ccccccmmmmccc]ccc]eee	chr19:45411715-45412023(+)$1	308	64	89	10.5279
"eeeee!!bbmmmmbb]eeeee333	chr18:11981530-11981808(+)$1	278	131	156	13.5400
e!!dddd[bbmmmmbb]ddddeeee	chr20:35024784-35025168(+)$1	384	307	332	12.5594
b!!bb"""bbmmmmbb4444bb]bb	chr1:29475170-29475448(-)$1	278	148	173	12.7084
fffff[acccmmmmccc]a]fffff	chr2:54784926-54785190(+)$1	264	109	134	10.1237
"ffffffcccmmmmccc333fffff	chr2:238484782-238485033(-)$1	251	176	201	10.2782
ggggggg[bbmmmmbb22ggggggg	chr16:447350-447597(+)$1	247	218	243	14.9619
eeeee!!cccmmmmccc333eeeee	chr5:154134886-154135232(+)$1	346	192	217	10.6955
gggggg!!bbmmmmbb333gggggg	chr2:232326183-232326513(-)$1	330	165	190	15.6903
deeeee[cccmmmmccc333eeeee	chr3:133292599-133292903(+)$1	304	187	212	10.4025
cc[ccc!!bbmmmmbb22ccc]ccc	chr21:34143592-34143958(-)$1	366	294	319	15.0673
cceeeee[bbmmmmbb]eeeee]cc	chr17:48784871-48785244(-)$1	373	144	169	12.9281
======!!ccclllccc22======	chr17:79962957-79963203(+)$1	246	80	105	9.3752
dddabb!!bbmmmmbb22bb]a22d	chr7:157582220-157582544(-)$1	324	248	273	12.9763
ffffff!!bbmmmmbb22ffffff2	chr19:39340412-39340681(-)$1	269	117	142	13.4466
:dddd"""bbmmmmbb333ddddgg	chr19:18391501-18391738(-)$1	237	24	49	12.9644
bb[ccc!!bbmmmmbbccc]bb444	chr20:60640260-60640607(-)$1	347	107	132	12.9551
ggggggg[bbmmmmbb22ggggggg	chr6:30548162-30548397(+)$1	235	166	191	14.9619
!eeeee!!bbmmmmbbeeeee333b	chr16:448459-448705(+)$1	246	205	230	12.9599
gggg####bbmmmmbb333gggggg	chr3:184044213-184044515(+)$1	302	17	42	15.2032
[ffffff[bbmmmmbbffffff22c	chr19:13054508-13054877(+)$1	369	5	30	12.2115
ff[ccc!!bbmmmmbb]ccc]ffff	chr16:58059579-58059999(+)$1	420	368	393	14.3460
ddd[ccccccmmmmccc]ccc]ddd	chr2:11484087-11484356(-)$1	269	84	109	10.1199
hhha[bb[bbmmmmbb]bb]a6666	chr6:149638899-149639149(+)$1	250	153	178	11.1321
gggg[a[cccmmmmcccaggggggg	chr21:46908232-46908458(+)$1	226	4	29	11.4365
dddd[bb[bbmmmmbb]bbddddFF	chr9:137241144-137241413(+)$1	269	225	250	11.5819
a[dddd!!bbmmmmbb22dddd]ac	chr16:431824-432076(-)$1	252	100	125	13.7256
hhhhhh!!bbmmmmbb22hhhhhhh	chr1:35652713-35652953(-)$1	240	50	75	12.8037
gggggg"""ammmma333ggggggg	chr12:49350987-49351329(-)$1	342	245	270	12.7823
cccccc!!bbmmmmbb22ccc22cc	chr17:36868855-36869144(+)$1	289	106	131	14.7507
===ccc!!bbmmmmbb]ccc::a[f	chr1:11986024-11986295(-)$1	271	133	158	12.5630
fffffbb[bbmmmmbb]bb]fffff	chr19:50016430-50016714(+)$1	284	176	201	12.6985
###dddd[bbmmmmbbdddd22ggg	chr2:11484261-11484599(-)$1	338	73	98	11.9768
gggggg[cccmmmmccc]ggggggg	chr16:447206-447460(+)$1	254	213	238	11.5875
gggggg[cccmmmmccc]ggggggg	chr19:3062203-3062528(-)$1	325	46	71	11.5875
ciiiiiiiiimmmmiiiiiiiii]c	chr17:48823044-48823465(+)$1	421	385	410	10.5874
gg[accc[bbmmmmbb]ccc]a]gg	chr8:144815732-144816019(-)$1	287	75	100	14.6507
ccc[ccc[bbmmmmbbccc]ccc]b	chr11:64536848-64537114(-)$1	266	115	140	13.4533
[ccc[bb[bbmmmmbbbbccc22dd	chr22:29279647-29279951(+)$1	304	97	122	12.4101
+++ccc!!bbmmmmbb333ccc22b	chr3:167750216-167750601(-)$1	385	258	283	12.6636
gggggga[bbmmmmbb]a]gggggg	chr13:113764267-113764650(+)$1	383	307	332	14.7333
g!!a[bb[bbmmmmbb]bba22ggg	chrX:152953466-152953745(+)$1	279	208	233	13.4662
gggggg!!bbmmmmbb22ggggggg	chr14:21831161-21831408(-)$1	247	53	78	15.3189
!!ccccccbbmmmmbb22ccc]ccc	chr22:36685150-36685424(-)$1	274	180	205	14.1442
ddd!!bb[bbmmmmbb]bb]dddd2	chrX:152953545-152953898(+)$1	353	184	209	12.1346
eeeeccc[bbmmmmbb]ccc:dddd	chr1:156105622-156105905(+)$1	283	90	115	12.2912
==========mmmm===========	chr12:53852949-53853288(+)$1	339	18	43	11.4064

#otherMatches

#Seq PSSM
CCCGACUGCCGCGGGGACAGCGAGG	chr20:389134-389359(+)$1	225	101	126	13.5112
agccgccgccgGAggggggcgcggu	chr19:14200693-14200955(-)$1	262	99	124	12.5282
UCGGCCGCAGGGCGCUGAUGGACGA	chr19:45411715-45412023(+)$1	308	64	89	10.5279
GGCCGCGAUGAAGCCGAGCGGCGAG	chr18:11981530-11981808(+)$1	278	131	156	13.5400
GAUAGAUGGAACUUUUGAUCUUCCU	chr20:35024784-35025168(+)$1	384	307	332	12.5594
cagccgcagcaagagugagaggagc	chr1:29475170-29475448(-)$1	278	148	173	12.7084
GCCGGGCCGCCGCCGCGUGGUUGGC	chr2:54784926-54785190(+)$1	264	109	134	10.1237
GUGCACUCACGAUGGUGGAUGGUGC	chr2:238484782-238485033(-)$1	251	176	201	10.2782
CGGGUCCGGGGCGACCGAGGGCCCG	chr16:447350-447597(+)$1	247	218	243	14.9619
GGCCUGGACUGCAGAGUGGGGGGCC	chr5:154134886-154135232(+)$1	346	192	217	10.6955
AGCAGCGAUGAAAGCAGCAGCUGCU	chr2:232326183-232326513(-)$1	330	165	190	15.6903
CCCGGCAGCGUGAGCGCAGAGCCGG	chr3:133292599-133292903(+)$1	304	187	212	10.4025
CUGCUCAGCUUCCAGGACGAGGAGG	chr21:34143592-34143958(-)$1	366	294	319	15.0673
gggccgcggcgacggcggcggcgcu	chr17:48784871-48785244(-)$1	373	144	169	12.9281
CCGGAAAUAUUGCUGGUUCUUCUGG	chr17:79962957-79963203(+)$1	246	80	105	9.3752
GCUGGGGACCUCAGGGGACCACGGA	chr7:157582220-157582544(-)$1	324	248	273	12.9763
CGGCUGGAGCAGAGGCAGCAGCCGG	chr19:39340412-39340681(-)$1	269	117	142	13.4466
ACGCGAACCUGAGCAGCUAcgcggg	chr19:18391501-18391738(-)$1	237	24	49	12.9644
gccgcgAAGCUGAGGCCGCCGCCCG	chr20:60640260-60640607(-)$1	347	107	132	12.9551
AGGGACUAGGGCUUCCAGGGUCCUU	chr6:30548162-30548397(+)$1	235	166	191	14.9619
UGGACCUUGCGGUGGUGGUCCCUGA	chr16:448459-448705(+)$1	246	205	230	12.9599
UACCUGUUUGGUUGCAUAUGGUGGU	chr3:184044213-184044515(+)$1	302	17	42	15.2032
GCUCUGCCUGCAGGCAGCAGAGAAA	chr19:13054508-13054877(+)$1	369	5	30	12.2115
CCGGAGUUGCGCUUGCUCUCGGGAG	chr16:58059579-58059999(+)$1	420	368	393	14.3460
CGGUGGCGGCAUGAGCCGGCCCCCG	chr2:11484087-11484356(-)$1	269	84	109	10.1199
ccgugguggcggaggcgacggugga	chr6:149638899-149639149(+)$1	250	153	178	11.1321
GUCUUGACUGUUACUAGCGGGCUUU	chr21:46908232-46908458(+)$1	226	4	29	11.4365
CGUGGCGGGCAGGAGUGUGCACGGA	chr9:137241144-137241413(+)$1	269	225	250	11.5819
UGCCCGGGGCGACGGCGGCGGGGAC	chr16:431824-432076(-)$1	252	100	125	13.7256
GCUUGCUGUGGGUAUAGUGCAGGUA	chr1:35652713-35652953(-)$1	240	50	75	12.8037
CUGGGAAGGGAAGGCGGGUCCCGGU	chr12:49350987-49351329(-)$1	342	245	270	12.7823
CGCCUUAAGCAGAAGCACAAGAAGC	chr17:36868855-36869144(+)$1	289	106	131	14.7507
ggcggccUGCACCUGCUGCCCUGGU	chr1:11986024-11986295(-)$1	271	133	158	12.5630
GGGGUCGGGAGGAGUCACGUGCCCC	chr19:50016430-50016714(+)$1	284	176	201	12.6985
GAAUCUGACUGAGGGGCGGGGACGC	chr2:11484261-11484599(-)$1	338	73	98	11.9768
GCCUCGGGGCGCGGGCUGCGGGGUC	chr16:447206-447460(+)$1	254	213	238	11.5875
CGCCGCCAUUAGACAAUAGCggugg	chr19:3062203-3062528(-)$1	325	46	71	11.5875
AGUAUUAUUCCUUGGAAUGGUACUU	chr17:48823044-48823465(+)$1	421	385	410	10.5874
CUGCCGGACCGACCGGACCGCGAGG	chr8:144815732-144816019(-)$1	287	75	100	14.6507
GUUGGGCGCAAAGAUGGCCAGAUGU	chr11:64536848-64537114(-)$1	266	115	140	13.4533
ccgcAGGACCAUGAGGCCGCGCUCG	chr22:29279647-29279951(+)$1	304	97	122	12.4101
GCAGCCAACCUCCUGGAAGGGCACG	chr3:167750216-167750601(-)$1	385	258	283	12.6636
UGGAGACGAGGGAUUUGGAUUUCCG	chr13:113764267-113764650(+)$1	383	307	332	14.7333
GAGGAGCCGCCGCAGCCGCCGCCGC	chrX:152953466-152953745(+)$1	279	208	233	13.4662
GUCAUAUGGCUCACGUGUUGUGAUA	chr14:21831161-21831408(-)$1	247	53	78	15.3189
GCCCGGGCCCUGGAGGAAGCCAUGG	chr22:36685150-36685424(-)$1	274	180	205	14.1442
ccgccgccgccgccgccgcccggcc	chrX:152953545-152953898(+)$1	353	184	209	12.1346
CUUCGAGACCUGGAGGACUCACUGG	chr1:156105622-156105905(+)$1	283	90	115	12.2912
CACUUACCCUAAUAAGGGUAAGUGG	chr12:53852949-53853288(+)$1	339	18	43	11.4064

#DB
(..(.(((((....)).))))))))	chr20:389134-389359(+)$1	1	101	126	13.5112
(.(((((.((....)).)))).).)	chr19:14200693-14200955(-)$1	1	99	124	12.5282
(((.((((((....))).))).)))	chr19:45411715-45412023(+)$1	1	64	89	10.5279
.(((((..((....)).)))))...	chr18:11981530-11981808(+)$1	1	131	156	13.5400
(..((((.((....)).))))))))	chr20:35024784-35025168(+)$1	1	307	332	12.5594
(..((...((....))....)).))	chr1:29475170-29475448(-)$1	1	148	173	12.7084
(((((.((((....))).).)))))	chr2:54784926-54785190(+)$1	1	109	134	10.1237
.(((((((((....)))...)))))	chr2:238484782-238485033(-)$1	1	176	201	10.2782
(((((((.((....))..)))))))	chr16:447350-447597(+)$1	1	218	243	14.9619
(((((..(((....)))...)))))	chr5:154134886-154135232(+)$1	1	192	217	10.6955
((((((..((....))...))))))	chr2:232326183-232326513(-)$1	1	165	190	15.6903
)(((((.(((....)))...)))))	chr3:133292599-133292903(+)$1	1	187	212	10.4025
((.(((..((....))..))).)))	chr21:34143592-34143958(-)$1	1	294	319	15.0673
(((((((.((....)).))))).))	chr17:48784871-48785244(-)$1	1	144	169	12.9281
((((((..(((...)))..))))))	chr17:79962957-79963203(+)$1	1	80	105	9.3752
((((((..((....))..)).)..)	chr7:157582220-157582544(-)$1	1	248	273	12.9763
((((((..((....))..)))))).	chr19:39340412-39340681(-)$1	1	117	142	13.4466
.((((...((....))...))))((	chr19:18391501-18391738(-)$1	1	24	49	12.9644
((.(((..((....))))).))...	chr20:60640260-60640607(-)$1	1	107	132	12.9551
(((((((.((....))..)))))))	chr6:30548162-30548397(+)$1	1	166	191	14.9619
.(((((..((....)))))))...)	chr16:448459-448705(+)$1	1	205	230	12.9599
((((....((....))...))))))	chr3:184044213-184044515(+)$1	1	17	42	15.2032
.((((((.((....))))))))..)	chr19:13054508-13054877(+)$1	1	5	30	12.2115
((.(((..((....)).))).))))	chr16:58059579-58059999(+)$1	1	368	393	14.3460
(((.((((((....))).))).)))	chr2:11484087-11484356(-)$1	1	84	109	10.1199
((((.((.((....)).)).)....	chr6:149638899-149639149(+)$1	1	153	178	11.1321
((((.(.(((....)))))))))))	chr21:46908232-46908458(+)$1	1	4	29	11.4365
((((.((.((....)).))))))))	chr9:137241144-137241413(+)$1	1	225	250	11.5819
(.((((..((....))..)))).))	chr16:431824-432076(-)$1	1	100	125	13.7256
((((((..((....))..)))))))	chr1:35652713-35652953(-)$1	1	50	75	12.8037
((((((...(....)...)))))))	chr12:49350987-49351329(-)$1	1	245	270	12.7823
((((((..((....))..)))..))	chr17:36868855-36869144(+)$1	1	106	131	14.7507
)))(((..((....)).)))..(.(	chr1:11986024-11986295(-)$1	1	133	158	12.5630
(((((((.((....)).)).)))))	chr19:50016430-50016714(+)$1	1	176	201	12.6985
...((((.((....))))))..)))	chr2:11484261-11484599(-)$1	1	73	98	11.9768
((((((.(((....))).)))))))	chr16:447206-447460(+)$1	1	213	238	11.5875
((((((.(((....))).)))))))	chr19:3062203-3062528(-)$1	1	46	71	11.5875
((((((((((....))))))))).)	chr17:48823044-48823465(+)$1	1	385	410	10.5874
((.((((.((....)).))).).))	chr8:144815732-144816019(-)$1	1	75	100	14.6507
(((.(((.((....))))).))).)	chr11:64536848-64537114(-)$1	1	115	140	13.4533
.(((.((.((....)))))))..))	chr22:29279647-29279951(+)$1	1	97	122	12.4101
...(((..((....))...)))..)	chr3:167750216-167750601(-)$1	1	258	283	12.6636
(((((((.((....)).).))))))	chr13:113764267-113764650(+)$1	1	307	332	14.7333
(..(.((.((....)).)))..)))	chrX:152953466-152953745(+)$1	1	208	233	13.4662
((((((..((....))..)))))))	chr14:21831161-21831408(-)$1	1	53	78	15.3189
..((((((((....))..))).)))	chr22:36685150-36685424(-)$1	1	180	205	14.1442
(((..((.((....)).)).)))).	chrX:152953545-152953898(+)$1	1	184	209	12.1346
))))(((.((....)).))).((((	chr1:156105622-156105905(+)$1	1	90	115	12.2912
((((((((((....)))))))))))	chr12:53852949-53853288(+)$1	1	18	43	11.4064

#PSSM
g : 0.24	f : 0.10	d : 0.10	c : 0.10	e : 0.08	b : 0.06	= : 0.06	" : 0.04	! : 0.04	[ : 0.04	h : 0.04	: : 0.02	a : 0.02	# : 0.02	+ : 0.02	
g : 0.22	e : 0.12	f : 0.12	! : 0.10	c : 0.10	d : 0.10	= : 0.06	[ : 0.04	h : 0.04	b : 0.02	# : 0.02	i : 0.02	+ : 0.02	
g : 0.20	e : 0.14	d : 0.12	f : 0.10	! : 0.08	[ : 0.08	c : 0.08	= : 0.06	h : 0.04	a : 0.02	# : 0.02	i : 0.02	+ : 0.02	
g : 0.20	c : 0.16	d : 0.12	e : 0.12	a : 0.10	f : 0.10	[ : 0.06	= : 0.04	b : 0.02	h : 0.02	i : 0.02	! : 0.02	
c : 0.24	g : 0.16	[ : 0.12	d : 0.10	e : 0.10	f : 0.10	b : 0.04	= : 0.04	# : 0.02	h : 0.02	i : 0.02	! : 0.02	
c : 0.26	g : 0.16	b : 0.14	d : 0.08	e : 0.08	f : 0.06	" : 0.04	= : 0.04	[ : 0.02	! : 0.02	# : 0.02	a : 0.02	h : 0.02	i : 0.02	
! : 0.32	c : 0.14	b : 0.12	[ : 0.08	d : 0.06	" : 0.06	a : 0.04	f : 0.04	g : 0.04	e : 0.02	# : 0.02	i : 0.02	= : 0.02	
[ : 0.34	! : 0.30	c : 0.22	" : 0.06	# : 0.02	i : 0.02	= : 0.02	
b : 0.73	c : 0.20	" : 0.02	i : 0.02	= : 0.02	
b : 0.73	c : 0.20	a : 0.02	i : 0.02	= : 0.02	
m : 0.97	c : 0.02	
m : 0.97	l : 0.02	
m : 0.97	l : 0.02	
m : 0.97	l : 0.02	
b : 0.73	c : 0.20	a : 0.02	i : 0.02	= : 0.02	
b : 0.73	c : 0.20	3 : 0.02	i : 0.02	= : 0.02	
] : 0.30	c : 0.24	2 : 0.20	3 : 0.10	4 : 0.02	e : 0.02	f : 0.02	d : 0.02	i : 0.02	b : 0.02	= : 0.02	
2 : 0.22	3 : 0.16	c : 0.14	b : 0.12	] : 0.10	d : 0.06	e : 0.06	a : 0.04	4 : 0.02	f : 0.02	i : 0.02	= : 0.02	
c : 0.26	3 : 0.14	g : 0.14	b : 0.12	d : 0.08	e : 0.06	f : 0.04	4 : 0.02	a : 0.02	2 : 0.02	h : 0.02	i : 0.02	] : 0.02	= : 0.02	
c : 0.24	g : 0.20	d : 0.12	] : 0.12	e : 0.06	3 : 0.06	= : 0.04	f : 0.04	4 : 0.02	b : 0.02	h : 0.02	i : 0.02	a : 0.02	
g : 0.20	c : 0.16	d : 0.12	e : 0.10	f : 0.10	] : 0.06	a : 0.04	b : 0.04	= : 0.04	: : 0.04	2 : 0.04	h : 0.02	i : 0.02	
g : 0.20	f : 0.14	] : 0.10	e : 0.10	d : 0.10	2 : 0.08	b : 0.04	= : 0.04	a : 0.04	c : 0.04	3 : 0.02	6 : 0.02	h : 0.02	: : 0.02	i : 0.02	
g : 0.24	f : 0.12	2 : 0.10	d : 0.10	e : 0.08	] : 0.08	c : 0.06	a : 0.04	3 : 0.04	= : 0.04	4 : 0.02	6 : 0.02	h : 0.02	i : 0.02	
g : 0.28	f : 0.12	e : 0.08	c : 0.08	d : 0.08	] : 0.06	2 : 0.06	3 : 0.04	= : 0.04	b : 0.02	4 : 0.02	6 : 0.02	F : 0.02	a : 0.02	h : 0.02	[ : 0.02	
g : 0.28	c : 0.14	f : 0.12	b : 0.10	e : 0.08	d : 0.08	= : 0.04	2 : 0.04	3 : 0.02	4 : 0.02	6 : 0.02	F : 0.02	h : 0.02	

#score	622.9311263940573
#seq	49
#width	25
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_CDS_m3_run1.txt

#BEAR
cc####cccqqqqqqqqccc5	chr19:8386736-8386953(+)$1	217	129	150	14.4448
cccffffffqqqqqqqqffff	chr14:23495146-23495414(-)$1	268	245	266	14.1008
eeccc[cccqqqqqqqqccc]	chr11:842313-842584(-)$1	271	202	223	15.0916
fffffddddqqqqqqqqdddd	chr19:39125566-39125851(+)$1	285	167	188	13.7297
cc:ffffffqqqqqqqqffff	chr11:5289657-5289863(-)$1	206	109	130	13.2316
ddd[bb[bbqqqqqqqqbb]b	chr17:34171862-34172132(+)$1	270	226	247	13.3697
[a!!eeeeeqqqqqqqqeeee	chr14:24687254-24687517(-)$1	263	166	187	14.8690
dddd[ddddqqqqqqqqdddd	chr19:54606325-54606597(+)$1	272	105	126	13.9673
!!a[bb[bbqqqqqqqqbb]b	chr9:130931229-130931515(-)$1	286	88	109	14.0302
d[gggggggqqqqqqqqgggg	chr5:1815880-1816131(+)$1	251	178	199	14.8683
ddd"""cccqqqqqqqqcccd	chr19:34870322-34870546(+)$1	224	39	60	14.9271
ddd:eeeeeqqqqqqqqeeee	chr12:53689583-53689821(+)$1	238	207	228	13.1851
gg:ffffffqqqqqqqqffff	chr7:99690391-99690670(-)$1	279	96	117	13.2716
====eeeeeqqqqqqqqeeee	chr7:54819920-54820218(-)$1	298	182	203	14.7655
ggggg:cccqqqqqqqqccce	chr19:19637989-19638204(+)$1	215	97	118	14.2411
bb!!eeeeeqqqqqqqqeeee	chr7:141443599-141443889(+)$1	290	256	277	14.2610
d!!bb[cccqqqqqqqqccc]	chr11:5290763-5290973(-)$1	210	49	70	15.0911
]a::eeeeeqqqqqqqqeeee	chr12:98995161-98995462(+)$1	301	227	248	12.3372
###ccc[bbqqqqqqqqbb]c	chr6:33384289-33384526(-)$1	237	208	229	14.5249
====[ddddqqqqqqqqdddd	chrX:47073643-47073917(+)$1	274	79	100	14.7274
eeee!!cccqqqqqqqqccc4	chr1:43629912-43630231(-)$1	319	156	177	14.9827
======cccqqqqqqqqccc:	chr16:31202250-31202500(+)$1	250	66	87	14.5688
a[dddd[bbqqqqqqqqbb]d	chr7:100486062-100486351(+)$1	289	83	104	14.1173
!bb"""cccqqqqqqqqccc]	chr16:88876729-88876969(-)$1	240	161	182	15.0955
$$$$$ddddqqqqqqqqdddd	chr6:34386045-34386274(-)$1	229	84	105	13.7547
ggggg[cccqqqqqqqqcccg	chr11:5290583-5290796(-)$1	213	146	167	15.3539
mddddddddqqqqqqqqdddd	chr5:1814367-1814669(+)$1	302	186	207	13.2188
e[ccc[cccqqqqqqqqccc]	chr2:98263478-98263704(+)$1	226	156	177	15.3888
cceeeee[aqqqqqqqqaeee	chr2:198365044-198365263(+)$1	219	64	85	14.3912
$$$ffffffqqqqqqqqffff	chr7:99057635-99057893(-)$1	258	42	63	13.8617
iiiiiiiiiqqqqqqqqiiii	chr1:151234553-151234815(+)$1	262	10	31	14.7886
""bb!!cccqqqqqqqqccc]	chr3:141644413-141644688(+)$1	275	127	148	15.2673
ggggggg[aqqqqqqqqa]gg	chr2:232577061-232577327(+)$1	266	41	62	14.6421
e:gggggggqqqqqqqqgggg	chr11:64084466-64084717(-)$1	251	190	211	13.7930
!!gggggggqqqqqqqqgggg	chr5:32601033-32601305(+)$1	272	239	260	15.1373
[ccc[ddddqqqqqqqqdddd	chr22:38349636-38349908(+)$1	272	76	97	14.5125
ddddeeeeeqqqqqqqqeeee	chr19:1271465-1271732(+)$1	267	116	137	14.0053
c[ccc[cccqqqqqqqqccc]	chr4:57325490-57325754(+)$1	264	230	251	15.4772
iii[cccbbqqqqqqqqbb]c	chr17:27076851-27077133(+)$1	282	13	34	14.5386
gggg[ddddqqqqqqqqdddd	chr1:156109457-156109757(+)$1	300	88	109	14.5181
b[gggggggqqqqqqqqgggg	chr20:2451232-2451532(-)$1	300	239	260	14.7119
eeeee!!bbqqqqqqqqbb22	chr5:1815863-1816080(+)$1	217	31	52	13.6776
c[ddddcccqqqqqqqqccc3	chr3:195778848-195779112(-)$1	264	92	113	14.9087
!eeeeecccqqqqqqqqccc]	chr10:106026907-106027153(+)$1	246	34	55	15.0844
:ffffffbbqqqqqqqqbb]f	chrX:49453959-49454202(-)$1	243	87	108	12.8465
iiiiiiiiiqqqqqqqqiiii	chr18:43664458-43664707(-)$1	249	92	113	14.7886
[bb[aa[bbqqqqqqqqbb]a	chr17:45300282-45300511(+)$1	229	126	147	14.0556
eeeee!!bbqqqqqqqqbb22	chr1:24021051-24021276(+)$1	225	138	159	13.6776
[ccceeeeeqqqqqqqqeeee	chr21:33040683-33040929(+)$1	246	9	30	14.5505
gggg:ddddqqqqqqqqdddd	chr1:45480566-45480779(+)$1	213	24	45	13.4139
::eeeee[aqqqqqqqqa]ee	chr3:150262133-150262387(-)$1	254	81	102	12.5091
a$$$$$cccqqqqqqqqccc4	chr19:59061536-59061750(+)$1	214	165	186	14.5138
"""ffffffqqqqqqqqffff	chr11:5291012-5291219(-)$1	207	162	183	14.4851
ddd[eeeeeqqqqqqqqeeee	chr19:50000350-50000564(+)$1	214	127	148	14.3098
c####ddddqqqqqqqqdddd	chr19:50183643-50183888(+)$1	245	61	82	14.5898
a!!ffffffqqqqqqqqffff	chr6:33243641-33243845(+)$1	204	1	22	14.4941

#otherMatches

#Seq PSSM
CCGAUCCAUCAUCCGCAAUGU	chr19:8386736-8386953(+)$1	217	129	150	14.4448
CUGGCACAUUGACCUCUAUGU	chr14:23495146-23495414(-)$1	268	245	266	14.1008
ccgccguggggcgcgggccgg	chr11:842313-842584(-)$1	271	202	223	15.0916
AUUGUGGAGAAGAUUGACUUU	chr19:39125566-39125851(+)$1	285	167	188	13.7297
CCUGGCAGAAGCUGGUGUCUG	chr11:5289657-5289863(-)$1	206	109	130	13.2316
AGAUUGGGGGAUUUGAACCAC	chr17:34171862-34172132(+)$1	270	226	247	13.3697
GUGGCAAGCAGAUGUGAGUUU	chr14:24687254-24687517(-)$1	263	166	187	14.8690
CCUUCCUCAAGAAUGCCUGGG	chr19:54606325-54606597(+)$1	272	105	126	13.9673
AGUGGACGCUGUGGGUUGCUU	chr9:130931229-130931515(-)$1	286	88	109	14.0302
CAUCCUGUGAGCAUUUCCGCG	chr5:1815880-1816131(+)$1	251	178	199	14.8683
GGAAGUGACUACCCUUUGUCU	chr19:34870322-34870546(+)$1	224	39	60	14.9271
CCCAGUUUUUCUUACCUGAAA	chr12:53689583-53689821(+)$1	238	207	228	13.1851
CACGGAUCACUUUUGUCUGAU	chr7:99690391-99690670(-)$1	279	96	117	13.2716
CAGAAUACAAAUUUGCCUGUA	chr7:54819920-54820218(-)$1	298	182	203	14.7655
CAGGCGCCUACAAAUCGAGGA	chr19:19637989-19638204(+)$1	215	97	118	14.2411
GGCAAGGAGUGUGUAGUCUCU	chr7:141443599-141443889(+)$1	290	256	277	14.2610
UAUGGUGUCAUUUCAUAGACU	chr11:5290763-5290973(-)$1	210	49	70	15.0911
GUGUAGGAAAUUGUCUAUUCC	chr12:98995161-98995462(+)$1	301	227	248	12.3372
UUUUGCCUGUUUUUUGUCAUG	chr6:33384289-33384526(-)$1	237	208	229	14.5249
CAGUACUAUAACCAAGAGUGG	chrX:47073643-47073917(+)$1	274	79	100	14.7274
GAAGACUCGCAAUUUCACGAC	chr1:43629912-43630231(-)$1	319	156	177	14.9827
GAGGAGGCUAUGAUCGAGGCG	chr16:31202250-31202500(+)$1	250	66	87	14.5688
CCCAGACGAUGUUGAUUUCUU	chr7:100486062-100486351(+)$1	289	83	104	14.1173
AGGAAGGGCAGGGCCAGGCCA	chr16:88876729-88876969(-)$1	240	161	182	15.0955
AAGAAAGCCGAGGCUGGGGCU	chr6:34386045-34386274(-)$1	229	84	105	13.7547
CUUUAUAUUUUGACAUUAAUU	chr11:5290583-5290796(-)$1	213	146	167	15.3539
CCCAAAAGUGUAUAUAAACUU	chr5:1814367-1814669(+)$1	302	186	207	13.2188
GUAACUUAUGGCCUUGGAUGU	chr2:98263478-98263704(+)$1	226	156	177	15.3888
CUCUUUGCGGCGCUACACUAG	chr2:198365044-198365263(+)$1	219	64	85	14.3912
UUCAGUGGGUAUUUUUUCUCA	chr7:99057635-99057893(-)$1	258	42	63	13.8617
UCUGGAACUGGAGAGAAGGUU	chr1:151234553-151234815(+)$1	262	10	31	14.7886
UAGUAUGAGUAGGAUAUCUCC	chr3:141644413-141644688(+)$1	275	127	148	15.2673
AGCCACAGUAGGAGGGAAGUG	chr2:232577061-232577327(+)$1	266	41	62	14.6421
GAGAAGCGGCCCAUCACUUGC	chr11:64084466-64084717(-)$1	251	190	211	13.7930
UCUCCAAGCUAUUGUAUGUUU	chr5:32601033-32601305(+)$1	272	239	260	15.1373
GAGCCGCGCGAGUCGUAGUGU	chr22:38349636-38349908(+)$1	272	76	97	14.5125
UUCGAGUCCAGGAGUGGGGGC	chr19:1271465-1271732(+)$1	267	116	137	14.0053
AUUUUUUAGGGGAAAAACUAC	chr4:57325490-57325754(+)$1	264	230	251	15.4772
GGUGCCGGUCACACUCUACAC	chr17:27076851-27077133(+)$1	282	13	34	14.5386
CUGUAUUUUAUUUAGACAAGA	chr1:156109457-156109757(+)$1	300	88	109	14.5181
CUGUUGUGGAGUGGGAACCGC	chr20:2451232-2451532(-)$1	300	239	260	14.7119
UUCAAUGCUUAAUAUCUAGAU	chr5:1815863-1816080(+)$1	217	31	52	13.6776
AAAAGAGUCUCCUUUCCGACA	chr3:195778848-195779112(-)$1	264	92	113	14.9087
AUGGGAGACUCUGUGAUGUCA	chr10:106026907-106027153(+)$1	246	34	55	15.0844
GGUUCACCCGAAGACUGGGUG	chrX:49453959-49454202(-)$1	243	87	108	12.8465
AUGGCUAUUGAAGAACAAGUG	chr18:43664458-43664707(-)$1	249	92	113	14.7886
AGCAGAGUCUUCCAGGUGAGU	chr17:45300282-45300511(+)$1	229	126	147	14.0556
CUGGAAACUUUGGUUUUGGGA	chr1:24021051-24021276(+)$1	225	138	159	13.6776
UUAUGAGGUUCUUAAACAUCU	chr21:33040683-33040929(+)$1	246	9	30	14.5505
UGGCGCUGGCUUUGCUUCCAG	chr1:45480566-45480779(+)$1	213	24	45	13.4139
AUUUGCUCUUUCUUUUUACAG	chr3:150262133-150262387(-)$1	254	81	102	12.5091
GAACUAGGACCCAUUCAUCCA	chr19:59061536-59061750(+)$1	214	165	186	14.5138
GAAGAGGCUGGAGGUGAAGCC	chr11:5291012-5291219(-)$1	207	162	183	14.4851
ACCAUCUUUCAAAACAAGAAG	chr19:50000350-50000564(+)$1	214	127	148	14.3098
CCCCAGAUCUGACCCAUGAUC	chr19:50183643-50183888(+)$1	245	61	82	14.5898
GAACUCACUGAGGAUGAGGUG	chr6:33243641-33243845(+)$1	204	1	22	14.4941

#DB
((....(((........))).	chr19:8386736-8386953(+)$1	1	129	150	14.4448
)))((((((........))))	chr14:23495146-23495414(-)$1	1	245	266	14.1008
(((((.(((........))).	chr11:842313-842584(-)$1	1	202	223	15.0916
(((((((((........))))	chr19:39125566-39125851(+)$1	1	167	188	13.7297
)).((((((........))))	chr11:5289657-5289863(-)$1	1	109	130	13.2316
(((.((.((........)).)	chr17:34171862-34172132(+)$1	1	226	247	13.3697
.(..(((((........))))	chr14:24687254-24687517(-)$1	1	166	187	14.8690
((((.((((........))))	chr19:54606325-54606597(+)$1	1	105	126	13.9673
..(.((.((........)).)	chr9:130931229-130931515(-)$1	1	88	109	14.0302
(.(((((((........))))	chr5:1815880-1816131(+)$1	1	178	199	14.8683
(((...(((........))))	chr19:34870322-34870546(+)$1	1	39	60	14.9271
))).(((((........))))	chr12:53689583-53689821(+)$1	1	207	228	13.1851
)).((((((........))))	chr7:99690391-99690670(-)$1	1	96	117	13.2716
(((((((((........))))	chr7:54819920-54820218(-)$1	1	182	203	14.7655
))))).(((........)))(	chr19:19637989-19638204(+)$1	1	97	118	14.2411
((..(((((........))))	chr7:141443599-141443889(+)$1	1	256	277	14.2610
(..((.(((........))).	chr11:5290763-5290973(-)$1	1	49	70	15.0911
.)..(((((........))))	chr12:98995161-98995462(+)$1	1	227	248	12.3372
...(((.((........)).)	chr6:33384289-33384526(-)$1	1	208	229	14.5249
((((.((((........))))	chrX:47073643-47073917(+)$1	1	79	100	14.7274
((((..(((........))).	chr1:43629912-43630231(-)$1	1	156	177	14.9827
))))))(((........))).	chr16:31202250-31202500(+)$1	1	66	87	14.5688
(.((((.((........)).)	chr7:100486062-100486351(+)$1	1	83	104	14.1173
.((...(((........))).	chr16:88876729-88876969(-)$1	1	161	182	15.0955
.....((((........))))	chr6:34386045-34386274(-)$1	1	84	105	13.7547
(((((.(((........))))	chr11:5290583-5290796(-)$1	1	146	167	15.3539
.))))((((........))))	chr5:1814367-1814669(+)$1	1	186	207	13.2188
(.(((.(((........))).	chr2:98263478-98263704(+)$1	1	156	177	15.3888
(((((((.(........))))	chr2:198365044-198365263(+)$1	1	64	85	14.3912
...((((((........))))	chr7:99057635-99057893(-)$1	1	42	63	13.8617
(((((((((........))))	chr1:151234553-151234815(+)$1	1	10	31	14.7886
..((..(((........))).	chr3:141644413-141644688(+)$1	1	127	148	15.2673
(((((((.(........).))	chr2:232577061-232577327(+)$1	1	41	62	14.6421
).(((((((........))))	chr11:64084466-64084717(-)$1	1	190	211	13.7930
..(((((((........))))	chr5:32601033-32601305(+)$1	1	239	260	15.1373
.(((.((((........))))	chr22:38349636-38349908(+)$1	1	76	97	14.5125
(((((((((........))))	chr19:1271465-1271732(+)$1	1	116	137	14.0053
(.(((.(((........))).	chr4:57325490-57325754(+)$1	1	230	251	15.4772
(((.(((((........)).)	chr17:27076851-27077133(+)$1	1	13	34	14.5386
((((.((((........))))	chr1:156109457-156109757(+)$1	1	88	109	14.5181
(.(((((((........))))	chr20:2451232-2451532(-)$1	1	239	260	14.7119
(((((..((........))..	chr5:1815863-1816080(+)$1	1	31	52	13.6776
(.(((((((........))).	chr3:195778848-195779112(-)$1	1	92	113	14.9087
.((((((((........))).	chr10:106026907-106027153(+)$1	1	34	55	15.0844
.((((((((........)).)	chrX:49453959-49454202(-)$1	1	87	108	12.8465
(((((((((........))))	chr18:43664458-43664707(-)$1	1	92	113	14.7886
.((.((.((........)).)	chr17:45300282-45300511(+)$1	1	126	147	14.0556
(((((..((........))..	chr1:24021051-24021276(+)$1	1	138	159	13.6776
.((((((((........))))	chr21:33040683-33040929(+)$1	1	9	30	14.5505
)))).((((........))))	chr1:45480566-45480779(+)$1	1	24	45	13.4139
..(((((.(........).))	chr3:150262133-150262387(-)$1	1	81	102	12.5091
(.....(((........))).	chr19:59061536-59061750(+)$1	1	165	186	14.5138
...((((((........))))	chr11:5291012-5291219(-)$1	1	162	183	14.4851
(((.(((((........))))	chr19:50000350-50000564(+)$1	1	127	148	14.3098
(....((((........))))	chr19:50183643-50183888(+)$1	1	61	82	14.5898
(..((((((........))))	chr6:33243641-33243845(+)$1	1	1	22	14.4941

#PSSM
d : 0.14	c : 0.12	e : 0.10	g : 0.10	[ : 0.07	! : 0.07	= : 0.05	a : 0.05	i : 0.05	b : 0.03	$ : 0.03	" : 0.03	: : 0.03	f : 0.01	] : 0.01	# : 0.01	m : 0.01	
d : 0.12	c : 0.10	[ : 0.10	g : 0.10	e : 0.08	! : 0.07	= : 0.05	b : 0.05	$ : 0.05	i : 0.05	f : 0.03	a : 0.03	# : 0.03	" : 0.03	: : 0.03	
d : 0.16	g : 0.16	c : 0.10	e : 0.10	! : 0.07	# : 0.05	: : 0.05	= : 0.05	b : 0.05	$ : 0.05	i : 0.05	f : 0.03	a : 0.01	" : 0.01	
g : 0.16	f : 0.14	c : 0.10	e : 0.10	[ : 0.08	d : 0.08	= : 0.05	# : 0.03	! : 0.03	" : 0.03	: : 0.03	b : 0.03	$ : 0.03	i : 0.03	
e : 0.23	f : 0.14	g : 0.12	c : 0.08	[ : 0.07	b : 0.05	d : 0.05	# : 0.03	" : 0.03	! : 0.03	$ : 0.03	i : 0.03	= : 0.01	a : 0.01	: : 0.01	
d : 0.19	e : 0.19	f : 0.12	[ : 0.08	g : 0.08	! : 0.07	b : 0.03	" : 0.03	c : 0.03	i : 0.03	# : 0.01	: : 0.01	= : 0.01	a : 0.01	$ : 0.01	
c : 0.28	e : 0.17	d : 0.16	f : 0.12	[ : 0.08	g : 0.08	i : 0.03	! : 0.03	
c : 0.26	d : 0.16	b : 0.16	e : 0.14	f : 0.10	g : 0.07	[ : 0.05	i : 0.03	
c : 0.26	d : 0.16	b : 0.16	e : 0.14	f : 0.10	g : 0.07	a : 0.05	i : 0.03	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
c : 0.26	d : 0.16	b : 0.16	e : 0.14	f : 0.10	g : 0.07	a : 0.05	i : 0.03	
c : 0.26	d : 0.16	b : 0.16	e : 0.16	f : 0.10	g : 0.07	i : 0.03	] : 0.03	
c : 0.26	e : 0.17	d : 0.16	] : 0.12	f : 0.10	g : 0.08	i : 0.03	2 : 0.03	
d : 0.19	e : 0.19	f : 0.12	] : 0.12	g : 0.10	b : 0.03	c : 0.03	4 : 0.03	i : 0.03	2 : 0.03	5 : 0.01	: : 0.01	3 : 0.01	a : 0.01	

#score	801.0683186064866
#seq	56
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF037BNT_ZNF622_CDS_m3_run2.txt

#BEAR
f"""a[cccqqqqqqqqccc]aff	chr1:28534808-28535018(-)$1	210	116	140	16.3219
ggcccddddqqqqqqqqdddd]cc	chr1:39715620-39715873(+)$1	253	135	159	16.4847
cc[ccc[bbqqqqqqqqbb]cccc	chr15:76152171-76152424(+)$1	253	103	127	14.3150
$$$$$ddddqqqqqqqqdddd22f	chr16:53512994-53513237(+)$1	243	93	117	16.7080
####eeeeeqqqqqqqqeeeee==	chr2:160289168-160289467(-)$1	299	178	202	16.7818
fffff[cccqqqqqqqqccc]fff	chr11:33792186-33792445(-)$1	259	141	165	14.7501
:ccc!!cccqqqqqqqqccc22cc	chr17:48821015-48821241(+)$1	226	184	208	15.1622
""gggggggqqqqqqqqggggggg	chr13:107220067-107220320(-)$1	253	152	176	15.4682
=========qqqqqqqq=======	chr7:105516717-105517037(-)$1	320	22	46	16.1735
$$$$eeeeeqqqqqqqqeeeee]d	chr2:61725897-61726128(-)$1	231	21	45	15.9824
bb[bb[cccqqqqqqqqccc]bb3	chr3:170858098-170858375(-)$1	277	200	224	14.8091
::eeeee[aqqqqqqqqa]eeeee	chr6:4031976-4032308(+)$1	332	305	329	13.2653
c!!a[ddddqqqqqqqqdddda]c	chr18:9516936-9517235(+)$1	299	258	282	17.3529
$$$$eeeeeqqqqqqqqeeeee44	chr3:122943849-122944176(+)$1	327	32	56	16.3758
dddd!!cccqqqqqqqqccc22dd	chr16:1797134-1797376(+)$1	242	46	70	15.0278
#dddd[cccqqqqqqqqcccdddd	chr2:208439894-208440168(+)$1	274	50	74	15.1029
a####ddddqqqqqqqqdddd333	chr3:195792265-195792522(-)$1	257	74	98	18.2484
#ddddddddqqqqqqqqdddd]dd	chr19:39962211-39962460(+)$1	249	173	197	15.9449
ddd!!ddddqqqqqqqqdddd666	chr7:38908644-38908907(-)$1	263	210	234	15.6885
ff"""ddddqqqqqqqqdddd444	chr2:55770982-55771311(+)$1	329	278	302	17.6294
cc[ccc[bbqqqqqqqqbb]cccc	chr1:29313859-29314114(+)$1	255	112	136	14.3150
ee"""ddddqqqqqqqqdddd444	chr7:72884608-72884854(-)$1	246	130	154	17.6708
!eeeeecccqqqqqqqqccc]eee	chr1:109608746-109608954(-)$1	208	158	182	15.2220
c!!dddd[aqqqqqqqqa]dddd2	chr12:31241948-31242190(+)$1	242	74	98	15.6126
ddd!!ddddqqqqqqqqdddd22d	chr15:44751271-44751500(+)$1	229	90	114	16.5017
iii[eeeeeqqqqqqqqeeeee]i	chr15:35256336-35256589(-)$1	253	182	206	16.0098
:bb!!ddddqqqqqqqqdddd444	chr1:21071935-21072164(-)$1	229	18	42	16.5000
####eeeeeqqqqqqqqeeeee44	chr5:134113268-134113516(+)$1	248	146	170	17.0389
gg"""ddddqqqqqqqqdddd]gg	chr1:171511018-171511262(+)$1	244	147	171	17.3977
=========qqqqqqqq=======	chr18:55280794-55281012(-)$1	218	58	82	16.1735
fff"""cccqqqqqqqqccc4444	chr20:17934538-17934775(-)$1	237	83	107	16.3068
=========qqqqqqqq=======	chr4:69202637-69202896(-)$1	259	127	151	16.1735
cc"""ddddqqqqqqqqdddd]cc	chr9:123169269-123169478(-)$1	209	119	143	17.5467
bb[ffffffqqqqqqqqffffff]	chr11:95519181-95519481(-)$1	300	146	170	13.9113
((ccc[cccqqqqqqqqccc]ccc	chr10:1062914-1063159(+)$1	245	166	190	14.8668
c:eeeeebbqqqqqqqqbb]eeee	chr2:160203892-160204218(-)$1	326	211	235	13.0755
ccc!!ddddqqqqqqqqdddd22c	chr4:110415685-110415955(+)$1	270	150	174	17.0988
"""ffffffqqqqqqqqffffff]	chr17:56083052-56083282(-)$1	230	88	112	14.7846
dd"""ddddqqqqqqqqdddd333	chrX:119063882-119064209(-)$1	327	12	36	17.8392
[bb!!ddddqqqqqqqqdddd]bb	chr10:24889486-24889773(-)$1	287	218	242	16.4210
::a!!ddddqqqqqqqqdddd22a	chr1:39776435-39776688(+)$1	253	207	231	15.6270
%%bbeeeeeqqqqqqqqeeeee]b	chr1:109823390-109823667(-)$1	277	142	166	14.4973
!!bb[ddddqqqqqqqqddddbb2	chr1:113658875-113659138(+)$1	263	198	222	15.9907
iiiiiiiiiqqqqqqqqiiiiiii	chr10:35349700-35349943(-)$1	243	70	94	15.3966
e[ccc[cccqqqqqqqqccc]ccc	chr20:39751817-39752064(+)$1	247	189	213	15.6721
[ddddddddqqqqqqqqdddd]dd	chr14:102493738-102493981(+)$1	243	120	144	15.8609
&&&&eeeeeqqqqqqqqeeeee77	chr4:123868455-123868685(+)$1	230	167	191	13.5448
eebb!!cccqqqqqqqqccc22bb	chr5:134102506-134102722(+)$1	216	21	45	14.7480
cc[ffffffqqqqqqqqffffffc	chr19:45543386-45543664(+)$1	278	55	79	14.2314
:ccc[ddddqqqqqqqqddddccc	chr12:6690356-6690566(-)$1	210	71	95	15.8153
ggggggg[aqqqqqqqqa]ggggg	chr1:155883904-155884181(-)$1	277	44	68	14.9867
ccc[eeeeeqqqqqqqqeeeee]c	chr12:53848535-53848751(+)$1	216	66	90	15.9971
ee"""ddddqqqqqqqqdddd444	chr7:72884664-72884910(-)$1	246	186	210	17.6708
=========qqqqqqqq=======	chr6:150001065-150001368(-)$1	303	53	77	16.1735
g!!dddd[aqqqqqqqqadddd22	chr2:232327813-232328068(-)$1	255	190	214	15.9791
!!a[eeeeeqqqqqqqqeeeee]a	chr16:2809044-2809263(+)$1	219	173	197	16.4688
eeeffffffqqqqqqqqffffff]	chr19:48975487-48975737(+)$1	250	104	128	13.6077

#otherMatches

#Seq PSSM
UAAAGAAGGAAGGAAAACCUACAA	chr1:28534808-28535018(-)$1	210	116	140	16.3219
UCCUCUCAGGCAUCAAACUGGUGA	chr1:39715620-39715873(+)$1	253	135	159	16.4847
UAAGCACCUGGAUGUUGAGAUGCU	chr15:76152171-76152424(+)$1	253	103	127	14.3150
UCCAGAACAUUAUGCGUUGUUAUA	chr16:53512994-53513237(+)$1	243	93	117	16.7080
gaaUCUGAUGACAGCCAAUCAGGU	chr2:160289168-160289467(-)$1	299	178	202	16.7818
AUACUGGCUGAUAUCUGAGUGAGU	chr11:33792186-33792445(-)$1	259	141	165	14.7501
AUCUGUCUGUUAACAGUUAGUAGG	chr17:48821015-48821241(+)$1	226	184	208	15.1622
AAGGAGCGCGUGCGGAAGCGUUCC	chr13:107220067-107220320(-)$1	253	152	176	15.4682
ACGUUCCGAAGAUGACGUCGGAGC	chr7:105516717-105517037(-)$1	320	22	46	16.1735
AACUGAUACUUAUUUCUGUGUCUU	chr2:61725897-61726128(-)$1	231	21	45	15.9824
CCAGGAGCCCCACUGAUGGCCCCC	chr3:170858098-170858375(-)$1	277	200	224	14.8091
AAUUACUACAAAGAAACGAAGUAA	chr6:4031976-4032308(+)$1	332	305	329	13.2653
GAGGACCAUGAUGUAUGAUGGCAU	chr18:9516936-9517235(+)$1	299	258	282	17.3529
AAACAUCAUAUUCUGAAAUGAUUA	chr3:122943849-122944176(+)$1	327	32	56	16.3758
GCGUGGGCUCCAAGAACAGCAAGC	chr16:1797134-1797376(+)$1	242	46	70	15.0278
AAAGUCUUAUAUGGUAUUAAACUU	chr2:208439894-208440168(+)$1	274	50	74	15.1029
CUGACUGGAAAACAGACUCUACAU	chr3:195792265-195792522(-)$1	257	74	98	18.2484
GCAGGACCCUGUGCGUUGGGUACC	chr19:39962211-39962460(+)$1	249	173	197	15.9449
AAUUUGCUUGUGCUUUGGAGUCCU	chr7:38908644-38908907(-)$1	263	210	234	15.6885
GGAAAUCAAACUUCGAAUUGAAUC	chr2:55770982-55771311(+)$1	329	278	302	17.6294
UGACUGAGGCCGAAAAUUCACAGC	chr1:29313859-29314114(+)$1	255	112	136	14.3150
AAACUAGUCAUGCGCAGGACUCCU	chr7:72884608-72884854(-)$1	246	130	154	17.6708
UAUUCUUGAAGAUCUUGUCAUAGA	chr1:109608746-109608954(-)$1	208	158	182	15.2220
CAUGAGGUGAAGAAGAGCCCCUUU	chr12:31241948-31242190(+)$1	242	74	98	15.6126
UUCAAUUAAAAAAUUUAUUAAAGG	chr15:44751271-44751500(+)$1	229	90	114	16.5017
CUUGAGAAGUUACACUCCUUUUAA	chr15:35256336-35256589(-)$1	253	182	206	16.0098
AGGAGUUCUGUUUCCGAAGAAAGA	chr1:21071935-21072164(-)$1	229	18	42	16.5000
GGUAUGGAAUUUCUUAUUUUUAAA	chr5:134113268-134113516(+)$1	248	146	170	17.0389
UUGAAUGCACAAACAGUUGUAAAG	chr1:171511018-171511262(+)$1	244	147	171	17.3977
AAUGACAUUAUUGAACAAAUGUUG	chr18:55280794-55281012(-)$1	218	58	82	16.1735
GAAGGGUCUAUGACCAAAGAAGAA	chr20:17934538-17934775(-)$1	237	83	107	16.3068
UCUGGUUCAGGCACAGAUGGAUCA	chr4:69202637-69202896(-)$1	259	127	151	16.1735
GAAGGAGCCCUCACUCUGGCUGUC	chr9:123169269-123169478(-)$1	209	119	143	17.5467
AACAGUGCAAACAGCAAUGUGCUU	chr11:95519181-95519481(-)$1	300	146	170	13.9113
GGGGAGGCGGAUAGACACGUGUUU	chr10:1062914-1063159(+)$1	245	166	190	14.8668
UGCAAGUGAAGGUAAAAUCGACUU	chr2:160203892-160204218(-)$1	326	211	235	13.0755
GCUCCAGCUCCAGCUUCAGCUCCA	chr4:110415685-110415955(+)$1	270	150	174	17.0988
AAACUGGAUAACACUAAGUUUAGA	chr17:56083052-56083282(-)$1	230	88	112	14.7846
UUUAGAUUAUAAGCUUUUAAUAUU	chrX:119063882-119064209(-)$1	327	12	36	17.8392
CUGGAGAAAUCUGACCCUUUCACA	chr10:24889486-24889773(-)$1	287	218	242	16.4210
GACAAUGCAUUAAGGAUUGCAGAG	chr1:39776435-39776688(+)$1	253	207	231	15.6270
AUGCCACUCACCAGCCGGAGUGUG	chr1:109823390-109823667(-)$1	277	142	166	14.4973
UUUAUGGUUACAAUUUCAGCCUAU	chr1:113658875-113659138(+)$1	263	198	222	15.9907
AGUACUUGUUAUGUAUCAUAGGUA	chr10:35349700-35349943(-)$1	243	70	94	15.3966
CACUUGCCCUCGUGCCUGGGGGAG	chr20:39751817-39752064(+)$1	247	189	213	15.6721
AUACCCUUCUGGCCAAUGGAGAGG	chr14:102493738-102493981(+)$1	243	120	144	15.8609
AAGUCUUGUGUAAUGAAGCAGGUG	chr4:123868455-123868685(+)$1	230	167	191	13.5448
CAAUGUGGGACAGAAUCCCCUGAU	chr5:134102506-134102722(+)$1	216	21	45	14.7480
GUUGAGGCCCCAGGCUUGGCCUCA	chr19:45543386-45543664(+)$1	278	55	79	14.2314
AAGGAGGUUAAAUCUACAGCCCCU	chr12:6690356-6690566(-)$1	210	71	95	15.8153
UUGGGGUUGUUUUUUCUCUAUUCU	chr1:155883904-155884181(-)$1	277	44	68	14.9867
UGAAGGUGGAUUAAAUGUCACUCU	chr12:53848535-53848751(+)$1	216	66	90	15.9971
AAACUAGUCAUGCGCAGGACUCCU	chr7:72884664-72884910(-)$1	246	186	210	17.6708
AUGGGUAGUUCGUCUAUAUUAUUC	chr6:150001065-150001368(-)$1	303	53	77	16.1735
UAAAACUACAAAAUGGAGAGUUAA	chr2:232327813-232328068(-)$1	255	190	214	15.9791
GGUGAUUUUUUUUUCUUGGAGUGA	chr16:2809044-2809263(+)$1	219	173	197	16.4688
UCUUGGUGGAGAAUGAACUGCUGC	chr19:48975487-48975737(+)$1	250	104	128	13.6077

#DB
(...(.(((........))).)))	chr1:28534808-28535018(-)$1	1	116	140	16.3219
))(((((((........)))).))	chr1:39715620-39715873(+)$1	1	135	159	16.4847
((.(((.((........)).))))	chr15:76152171-76152424(+)$1	1	103	127	14.3150
.....((((........))))..)	chr16:53512994-53513237(+)$1	1	93	117	16.7080
....(((((........)))))))	chr2:160289168-160289467(-)$1	1	178	202	16.7818
(((((.(((........))).)))	chr11:33792186-33792445(-)$1	1	141	165	14.7501
.(((..(((........)))..))	chr17:48821015-48821241(+)$1	1	184	208	15.1622
..(((((((........)))))))	chr13:107220067-107220320(-)$1	1	152	176	15.4682
(((((((((........)))))))	chr7:105516717-105517037(-)$1	1	22	46	16.1735
....(((((........))))).)	chr2:61725897-61726128(-)$1	1	21	45	15.9824
((.((.(((........))).)).	chr3:170858098-170858375(-)$1	1	200	224	14.8091
..(((((.(........).)))))	chr6:4031976-4032308(+)$1	1	305	329	13.2653
(..(.((((........))))).)	chr18:9516936-9517235(+)$1	1	258	282	17.3529
....(((((........)))))..	chr3:122943849-122944176(+)$1	1	32	56	16.3758
((((..(((........)))..))	chr16:1797134-1797376(+)$1	1	46	70	15.0278
.((((.(((........)))))))	chr2:208439894-208440168(+)$1	1	50	74	15.1029
(....((((........))))...	chr3:195792265-195792522(-)$1	1	74	98	18.2484
.((((((((........)))).))	chr19:39962211-39962460(+)$1	1	173	197	15.9449
(((..((((........))))...	chr7:38908644-38908907(-)$1	1	210	234	15.6885
((...((((........))))...	chr2:55770982-55771311(+)$1	1	278	302	17.6294
((.(((.((........)).))))	chr1:29313859-29314114(+)$1	1	112	136	14.3150
((...((((........))))...	chr7:72884608-72884854(-)$1	1	130	154	17.6708
.((((((((........))).)))	chr1:109608746-109608954(-)$1	1	158	182	15.2220
(..((((.(........).)))).	chr12:31241948-31242190(+)$1	1	74	98	15.6126
(((..((((........))))..)	chr15:44751271-44751500(+)$1	1	90	114	16.5017
(((.(((((........))))).)	chr15:35256336-35256589(-)$1	1	182	206	16.0098
.((..((((........))))...	chr1:21071935-21072164(-)$1	1	18	42	16.5000
....(((((........)))))..	chr5:134113268-134113516(+)$1	1	146	170	17.0389
((...((((........)))).))	chr1:171511018-171511262(+)$1	1	147	171	17.3977
(((((((((........)))))))	chr18:55280794-55281012(-)$1	1	58	82	16.1735
(((...(((........)))....	chr20:17934538-17934775(-)$1	1	83	107	16.3068
(((((((((........)))))))	chr4:69202637-69202896(-)$1	1	127	151	16.1735
((...((((........)))).))	chr9:123169269-123169478(-)$1	1	119	143	17.5467
((.((((((........)))))).	chr11:95519181-95519481(-)$1	1	146	170	13.9113
..(((.(((........))).)))	chr10:1062914-1063159(+)$1	1	166	190	14.8668
).(((((((........)).))))	chr2:160203892-160204218(-)$1	1	211	235	13.0755
(((..((((........))))..)	chr4:110415685-110415955(+)$1	1	150	174	17.0988
...((((((........)))))).	chr17:56083052-56083282(-)$1	1	88	112	14.7846
((...((((........))))...	chrX:119063882-119064209(-)$1	1	12	36	17.8392
.((..((((........)))).))	chr10:24889486-24889773(-)$1	1	218	242	16.4210
..(..((((........))))..)	chr1:39776435-39776688(+)$1	1	207	231	15.6270
..(((((((........))))).)	chr1:109823390-109823667(-)$1	1	142	166	14.4973
..((.((((........)))))).	chr1:113658875-113659138(+)$1	1	198	222	15.9907
(((((((((........)))))))	chr10:35349700-35349943(-)$1	1	70	94	15.3966
(.(((.(((........))).)))	chr20:39751817-39752064(+)$1	1	189	213	15.6721
.((((((((........)))).))	chr14:102493738-102493981(+)$1	1	120	144	15.8609
....(((((........)))))..	chr4:123868455-123868685(+)$1	1	167	191	13.5448
((((..(((........)))..))	chr5:134102506-134102722(+)$1	1	21	45	14.7480
((.((((((........)))))))	chr19:45543386-45543664(+)$1	1	55	79	14.2314
.(((.((((........)))))))	chr12:6690356-6690566(-)$1	1	71	95	15.8153
(((((((.(........).)))))	chr1:155883904-155884181(-)$1	1	44	68	14.9867
(((.(((((........))))).)	chr12:53848535-53848751(+)$1	1	66	90	15.9971
((...((((........))))...	chr7:72884664-72884910(-)$1	1	186	210	17.6708
(((((((((........)))))))	chr6:150001065-150001368(-)$1	1	53	77	16.1735
(..((((.(........)))))..	chr2:232327813-232328068(-)$1	1	190	214	15.9791
..(.(((((........))))).)	chr16:2809044-2809263(+)$1	1	173	197	16.4688
(((((((((........)))))).	chr19:48975487-48975737(+)$1	1	104	128	13.6077

#PSSM
c : 0.15	: : 0.08	e : 0.08	f : 0.07	g : 0.07	# : 0.07	= : 0.07	d : 0.07	$ : 0.05	! : 0.05	" : 0.03	b : 0.03	i : 0.03	[ : 0.03	a : 0.01	( : 0.01	% : 0.01	& : 0.01	
c : 0.14	d : 0.12	! : 0.08	e : 0.08	= : 0.07	b : 0.07	" : 0.05	g : 0.05	$ : 0.05	# : 0.05	f : 0.05	: : 0.05	i : 0.03	( : 0.01	% : 0.01	[ : 0.01	& : 0.01	
" : 0.14	c : 0.12	d : 0.10	[ : 0.08	b : 0.08	= : 0.07	e : 0.07	$ : 0.05	# : 0.05	! : 0.05	f : 0.03	g : 0.03	i : 0.03	a : 0.03	& : 0.01	
" : 0.14	c : 0.12	d : 0.10	! : 0.10	f : 0.08	= : 0.07	b : 0.07	$ : 0.05	# : 0.05	e : 0.05	[ : 0.05	g : 0.03	a : 0.01	i : 0.01	& : 0.01	
e : 0.21	! : 0.15	" : 0.12	c : 0.08	f : 0.08	d : 0.08	= : 0.07	[ : 0.05	g : 0.03	a : 0.01	$ : 0.01	b : 0.01	# : 0.01	i : 0.01	
d : 0.38	e : 0.21	[ : 0.10	= : 0.07	f : 0.07	! : 0.05	c : 0.03	g : 0.03	" : 0.01	i : 0.01	
d : 0.38	c : 0.19	e : 0.19	= : 0.07	f : 0.07	[ : 0.03	g : 0.03	i : 0.01	
d : 0.35	c : 0.19	e : 0.15	= : 0.07	[ : 0.07	f : 0.07	b : 0.05	g : 0.01	i : 0.01	
d : 0.35	c : 0.19	e : 0.15	= : 0.07	a : 0.07	f : 0.07	b : 0.05	g : 0.01	i : 0.01	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
q : 1.00	
d : 0.35	c : 0.19	e : 0.15	= : 0.07	a : 0.07	f : 0.07	b : 0.05	g : 0.01	i : 0.01	
d : 0.36	c : 0.19	e : 0.15	= : 0.07	f : 0.07	b : 0.05	] : 0.05	g : 0.01	i : 0.01	
d : 0.38	c : 0.19	e : 0.17	= : 0.07	f : 0.07	] : 0.05	g : 0.03	i : 0.01	
d : 0.40	e : 0.19	] : 0.10	= : 0.07	f : 0.07	2 : 0.05	c : 0.03	g : 0.03	4 : 0.01	i : 0.01	
e : 0.21	2 : 0.12	] : 0.10	c : 0.08	f : 0.08	4 : 0.08	= : 0.07	d : 0.05	a : 0.03	g : 0.03	b : 0.03	3 : 0.03	6 : 0.01	i : 0.01	
c : 0.14	4 : 0.12	f : 0.10	] : 0.10	2 : 0.08	= : 0.08	d : 0.08	b : 0.07	g : 0.05	e : 0.05	3 : 0.03	6 : 0.01	i : 0.01	7 : 0.01	
c : 0.21	4 : 0.12	d : 0.10	= : 0.08	f : 0.05	g : 0.05	3 : 0.05	e : 0.05	2 : 0.05	] : 0.05	b : 0.05	i : 0.03	a : 0.03	6 : 0.01	7 : 0.01	

#score	900.3293959116271
#seq	57
#width	24
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF933AGU_RBM22_UTR_m2_run1.txt

#BEAR
FF}FFFFFFZZZF	chr3:184081019-184081291(+)$1	272	152	165	7.0058
HHHHHHHHEEEEE	chr14:104145831-104146092(+)$1	261	231	244	8.3936
JJJJJJJJJ}BB:	chr5:73935971-73936197(-)$1	226	189	202	10.3694
IIIIIIIII}CCC	chr16:279049-279353(-)$1	304	288	301	10.6717
JJJJJJJJJ}EEE	chr15:59280193-59280492(+)$1	299	145	158	10.5736
}HHHHHHHHDDDD	chr22:41924299-41924576(-)$1	277	263	276	8.3139
}HHHHHHHH}A::	chr16:2034873-2035110(+)$1	237	211	224	8.6127
JJJJJJJJJZZZC	chr14:24563576-24563826(+)$1	250	186	199	10.4587
IIIIIIIII____	chr22:36924937-36925194(-)$1	257	203	216	10.2120
HHHHHH}BBYYEE	chr17:8339412-8339669(+)$1	257	228	241	8.1762
JJJJJJJJJ}DDD	chr2:29117811-29118091(+)$1	280	168	181	10.2636
HHHHHHHH{CCCL	chr1:45987295-45987544(-)$1	249	28	41	7.5461
JJJJJJJJJ}BB}	chr20:34319691-34319936(-)$1	245	227	240	10.7113
IIIIIIIII}BB:	chr17:37009762-37010014(-)$1	252	231	244	10.5513
JJJJJJJJ{CCC:	chr2:62115288-62115605(-)$1	317	59	72	9.0670
D}GGGGGGGYYDD	chr17:74732713-74732977(-)$1	264	218	231	6.7143
gHHHHHHHHYYEE	chr1:1019547-1019802(-)$1	255	212	225	8.2777
C}GGGGGGGYYBB	chr20:48759844-48760142(-)$1	298	252	265	6.9558
JJJJJJCCCYYDD	chr9:33025278-33025552(+)$1	274	250	263	8.1927
CC}FFFFFFYYDD	chr3:50137412-50137671(+)$1	259	228	241	6.4644
HHHHHHHHDDDDd	chr4:1229684-1229928(-)$1	244	101	114	6.7701
JJJJJJJJJJ:::	chr1:162336931-162337186(+)$1	255	218	231	8.3764
HHHHHHHH}EEEE	chr2:130938858-130939165(-)$1	307	264	277	8.5500
JJJJJJJJJJ}BB	chr3:31705364-31705652(-)$1	288	248	261	9.9067
FFF}FFFFFF}BB	chr16:4736233-4736481(+)$1	248	227	240	6.6430
FF}FFFFFFYYBB	chr7:150020569-150020829(+)$1	260	219	232	7.5539
JJJJJJJJJ}CCC	chr12:125398990-125399203(-)$1	213	175	188	10.4898
JJJJJJJJJ}A}A	chr8:27629850-27630139(-)$1	289	101	114	10.5729
HHHHHHHH}CCC}	chr18:47018513-47018766(-)$1	253	225	238	8.3253
IIIIIIIII}A}E	chr17:79532338-79532603(-)$1	265	229	242	10.8089
}FFFFFF}EEEEE	chr14:103800511-103800774(+)$1	263	184	197	6.4835
IIIIIIII{BB::	chr17:36904258-36904522(-)$1	264	5	18	9.1057
HHHHHHHH{DDDD	chr16:66864539-66864852(-)$1	313	42	55	7.9859
JJJJJJJJJ~~~~	chr10:28822888-28823143(+)$1	255	227	240	10.9141
IIIIIIIIIYYDD	chr17:1945102-1945358(+)$1	256	93	106	10.8996
ZHHHHHHHHYYCC	chr17:4851343-4851621(-)$1	278	219	232	8.8969
JJJJJJJJJFFFF	chr1:146714422-146714697(+)$1	275	232	245	9.1249
JJJJJJJ}AZZZD	chr17:79651061-79651307(+)$1	246	125	138	9.6888
HHHHHHHH{DDDD	chr17:79082235-79082485(+)$1	250	123	136	7.9859
IIIIIIICCC}DD	chr16:28875088-28875354(+)$1	266	251	264	8.5160
IIIIIIIIICCC}	chr16:2317880-2318129(-)$1	249	158	171	9.9944
JJJJJJJJJ}DDD	chr2:242255328-242255573(+)$1	245	100	113	10.2636
JJJJJJJJJYYA}	chr14:64971592-64971850(+)$1	258	230	243	10.7888
EHHHHHHHHYYFF	chr5:140021294-140021545(+)$1	251	208	221	8.7750
FF}FFFFFFZZZF	chr3:184080984-184081219(+)$1	235	187	200	7.0058
JJJJJJJJJ}BB:	chr1:53373359-53373607(-)$1	248	131	144	10.3694
}HHHHHHHH::::	chr1:193028837-193029097(+)$1	260	230	243	7.1065
JJJJJJJJJ}EEE	chr6:31937121-31937377(+)$1	256	161	174	10.5736
JJJJJJJJJBBCC	chr9:97842981-97843250(+)$1	269	72	85	10.1652
}HHHHHHHH~~~~	chr11:18416142-18416415(+)$1	273	235	248	9.8119
HHHHHHHH{CCCd	chr6:30684808-30685081(-)$1	273	8	21	7.6079
FFGGGGGGGZZZE	chr9:74979409-74979681(-)$1	272	255	268	6.9493
JJJJJJJJJBB}E	chr17:39942649-39942911(-)$1	262	162	175	10.2735
HHHHHHHHYYEEE	chr1:33478626-33478881(-)$1	255	231	244	8.4916
E}GGGGGGG}CCC	chr9:139752458-139752721(+)$1	263	248	261	6.6554
JJJJJJJJJ}CCC	chr3:5229939-5230192(+)$1	253	172	185	10.4898
}HHHHHHHH}CCC	chr2:233415370-233415680(+)$1	310	226	239	9.3876
IIIIIIIIIFFFF	chr9:19380003-19380261(-)$1	258	211	224	9.3068
C}GGGGGGG~~~~	chr3:38167813-38168084(-)$1	271	225	238	6.9917

#otherMatches

#Seq PSSM
UCAGGAGGUGCUU	chr3:184081019-184081291(+)$1	272	152	165	7.0058
UUUUCUUCUCAGG	chr14:104145831-104146092(+)$1	261	231	244	8.3936
GGCAAGGGGAGCU	chr5:73935971-73936197(-)$1	226	189	202	10.3694
GUCUGCGCCAUGG	chr16:279049-279353(-)$1	304	288	301	10.6717
GAGGGGAGAAAGA	chr15:59280193-59280492(+)$1	299	145	158	10.5736
ACAGGGGAUUCCU	chr22:41924299-41924576(-)$1	277	263	276	8.3139
AGGACUGGGGCUA	chr16:2034873-2035110(+)$1	237	211	224	8.6127
GGCAGGGGCGACU	chr14:24563576-24563826(+)$1	250	186	199	10.4587
GCAGGAAUCCACU	chr22:36924937-36925194(-)$1	257	203	216	10.2120
GCUGGCGGUGACG	chr17:8339412-8339669(+)$1	257	228	241	8.1762
GGAGGGCGCAGCU	chr2:29117811-29118091(+)$1	280	168	181	10.2636
ACUUGUGUUGGGA	chr1:45987295-45987544(-)$1	249	28	41	7.5461
AGUGAAAAUACAG	chr20:34319691-34319936(-)$1	245	227	240	10.7113
GGGUGCUGGAGAG	chr17:37009762-37010014(-)$1	252	231	244	10.5513
AUCCGCUUCAGCA	chr2:62115288-62115605(-)$1	317	59	72	9.0670
CGUCUCGCGACCC	chr17:74732713-74732977(-)$1	264	218	231	6.7143
AAGGCAGGGCCAG	chr1:1019547-1019802(-)$1	255	212	225	8.2777
agcagcaccuccc	chr20:48759844-48760142(-)$1	298	252	265	6.9558
GGUGUGGUGCCCU	chr9:33025278-33025552(+)$1	274	250	263	8.1927
CAUCUGAGGAACU	chr3:50137412-50137671(+)$1	259	228	241	6.4644
GUGUGGGGCCCUG	chr4:1229684-1229928(-)$1	244	101	114	6.7701
GAGAGCGAGGAGC	chr1:162336931-162337186(+)$1	255	218	231	8.3764
UCCCGCGCGGCUC	chr2:130938858-130939165(-)$1	307	264	277	8.5500
CAGGUUUUCUGCC	chr3:31705364-31705652(-)$1	288	248	261	9.9067
CAGUGGCUGCUGC	chr16:4736233-4736481(+)$1	248	227	240	6.6430
ccagcccuuaccc	chr7:150020569-150020829(+)$1	260	219	232	7.5539
CGAGCAAGGUUGC	chr12:125398990-125399203(-)$1	213	175	188	10.4898
GCAGCAGCGGUGA	chr8:27629850-27630139(-)$1	289	101	114	10.5729
GCCUGGGGUCCGU	chr18:47018513-47018766(-)$1	253	225	238	8.3253
CCUGCCAGGCACG	chr17:79532338-79532603(-)$1	265	229	242	10.8089
ACGGCUCACGGCG	chr14:103800511-103800774(+)$1	263	184	197	6.4835
ccccuccccuccc	chr17:36904258-36904522(-)$1	264	5	18	9.1057
GCGCGGCCAUGGC	chr16:66864539-66864852(-)$1	313	42	55	7.9859
GGUUCCUUUAGCG	chr10:28822888-28823143(+)$1	255	227	240	10.9141
CCGCCUUUUGCCG	chr17:1945102-1945358(+)$1	256	93	106	10.8996
GUCCCUCAGUUGC	chr17:4851343-4851621(-)$1	278	219	232	8.8969
ggcccccgccugc	chr1:146714422-146714697(+)$1	275	232	245	9.1249
GGCGCUGAGUCAG	chr17:79651061-79651307(+)$1	246	125	138	9.6888
GGCCGGGUGGGGC	chr17:79082235-79082485(+)$1	250	123	136	7.9859
GAUUCCUGGGUGG	chr16:28875088-28875354(+)$1	266	251	264	8.5160
UCCUCAGCCCCGC	chr16:2317880-2318129(-)$1	249	158	171	9.9944
UUGUGGGCCGGCC	chr2:242255328-242255573(+)$1	245	100	113	10.2636
UGCCAGGCCGCCU	chr14:64971592-64971850(+)$1	258	230	243	10.7888
GGCCCUGCUGCAG	chr5:140021294-140021545(+)$1	251	208	221	8.7750
UCAGGAGGUGCUU	chr3:184080984-184081219(+)$1	235	187	200	7.0058
ACCCCCACCAGCA	chr1:53373359-53373607(-)$1	248	131	144	10.3694
ACCCUGGGUAACG	chr1:193028837-193029097(+)$1	260	230	243	7.1065
UCCCCACAGCCCU	chr6:31937121-31937377(+)$1	256	161	174	10.5736
GAGGAUCAGGUAG	chr9:97842981-97843250(+)$1	269	72	85	10.1652
CUGCUUUUGCUCU	chr11:18416142-18416415(+)$1	273	235	248	9.8119
CUCCACCUGGGUC	chr6:30684808-30685081(-)$1	273	8	21	7.6079
CGUGGCCCGAGAC	chr9:74979409-74979681(-)$1	272	255	268	6.9493
GGCCGGUGCCAUC	chr17:39942649-39942911(-)$1	262	162	175	10.2735
GAUGUAUCUUUGG	chr1:33478626-33478881(-)$1	255	231	244	8.4916
GACGGGCCCUGCC	chr9:139752458-139752721(+)$1	263	248	261	6.6554
GUCCCGGGCAGCG	chr3:5229939-5230192(+)$1	253	172	185	10.4898
GCGGGGAGGAGGG	chr2:233415370-233415680(+)$1	310	226	239	9.3876
UUCUGGGGCAUGG	chr9:19380003-19380261(-)$1	258	211	224	9.3068
CUUCUUACCCCAA	chr3:38167813-38168084(-)$1	271	225	238	6.9917

#DB
)).))))))...)	chr3:184081019-184081291(+)$1	1	152	165	7.0058
)))))))))))))	chr14:104145831-104146092(+)$1	1	231	244	8.3936
))))))))).)).	chr5:73935971-73936197(-)$1	1	189	202	10.3694
))))))))).)))	chr16:279049-279353(-)$1	1	288	301	10.6717
))))))))).)))	chr15:59280193-59280492(+)$1	1	145	158	10.5736
.))))))))))))	chr22:41924299-41924576(-)$1	1	263	276	8.3139
.)))))))).)..	chr16:2034873-2035110(+)$1	1	211	224	8.6127
)))))))))...)	chr14:24563576-24563826(+)$1	1	186	199	10.4587
)))))))))....	chr22:36924937-36925194(-)$1	1	203	216	10.2120
)))))).))..))	chr17:8339412-8339669(+)$1	1	228	241	8.1762
))))))))).)))	chr2:29117811-29118091(+)$1	1	168	181	10.2636
((((((((.(((.	chr1:45987295-45987544(-)$1	1	28	41	7.5461
))))))))).)).	chr20:34319691-34319936(-)$1	1	227	240	10.7113
))))))))).)).	chr17:37009762-37010014(-)$1	1	231	244	10.5513
((((((((.(((.	chr2:62115288-62115605(-)$1	1	59	72	9.0670
).)))))))..))	chr17:74732713-74732977(-)$1	1	218	231	6.7143
)))))))))..))	chr1:1019547-1019802(-)$1	1	212	225	8.2777
).)))))))..))	chr20:48759844-48760142(-)$1	1	252	265	6.9558
)))))))))..))	chr9:33025278-33025552(+)$1	1	250	263	8.1927
)).))))))..))	chr3:50137412-50137671(+)$1	1	228	241	6.4644
(((((((((((((	chr4:1229684-1229928(-)$1	1	101	114	6.7701
))))))))))...	chr1:162336931-162337186(+)$1	1	218	231	8.3764
)))))))).))))	chr2:130938858-130939165(-)$1	1	264	277	8.5500
)))))))))).))	chr3:31705364-31705652(-)$1	1	248	261	9.9067
))).)))))).))	chr16:4736233-4736481(+)$1	1	227	240	6.6430
)).))))))..))	chr7:150020569-150020829(+)$1	1	219	232	7.5539
))))))))).)))	chr12:125398990-125399203(-)$1	1	175	188	10.4898
))))))))).).)	chr8:27629850-27630139(-)$1	1	101	114	10.5729
)))))))).))).	chr18:47018513-47018766(-)$1	1	225	238	8.3253
))))))))).).)	chr17:79532338-79532603(-)$1	1	229	242	10.8089
.)))))).)))))	chr14:103800511-103800774(+)$1	1	184	197	6.4835
((((((((.((..	chr17:36904258-36904522(-)$1	1	5	18	9.1057
((((((((.((((	chr16:66864539-66864852(-)$1	1	42	55	7.9859
)))))))))....	chr10:28822888-28823143(+)$1	1	227	240	10.9141
)))))))))..))	chr17:1945102-1945358(+)$1	1	93	106	10.8996
.))))))))..))	chr17:4851343-4851621(-)$1	1	219	232	8.8969
)))))))))))))	chr1:146714422-146714697(+)$1	1	232	245	9.1249
))))))).)...)	chr17:79651061-79651307(+)$1	1	125	138	9.6888
((((((((.((((	chr17:79082235-79082485(+)$1	1	123	136	7.9859
)))))))))).))	chr16:28875088-28875354(+)$1	1	251	264	8.5160
)))))))))))).	chr16:2317880-2318129(-)$1	1	158	171	9.9944
))))))))).)))	chr2:242255328-242255573(+)$1	1	100	113	10.2636
)))))))))..).	chr14:64971592-64971850(+)$1	1	230	243	10.7888
)))))))))..))	chr5:140021294-140021545(+)$1	1	208	221	8.7750
)).))))))...)	chr3:184080984-184081219(+)$1	1	187	200	7.0058
))))))))).)).	chr1:53373359-53373607(-)$1	1	131	144	10.3694
.))))))))....	chr1:193028837-193029097(+)$1	1	230	243	7.1065
))))))))).)))	chr6:31937121-31937377(+)$1	1	161	174	10.5736
(((((((((((((	chr9:97842981-97843250(+)$1	1	72	85	10.1652
.))))))))....	chr11:18416142-18416415(+)$1	1	235	248	9.8119
((((((((.((((	chr6:30684808-30685081(-)$1	1	8	21	7.6079
)))))))))...)	chr9:74979409-74979681(-)$1	1	255	268	6.9493
))))))))))).)	chr17:39942649-39942911(-)$1	1	162	175	10.2735
))))))))..)))	chr1:33478626-33478881(-)$1	1	231	244	8.4916
).))))))).)))	chr9:139752458-139752721(+)$1	1	248	261	6.6554
))))))))).)))	chr3:5229939-5230192(+)$1	1	172	185	10.4898
.)))))))).)))	chr2:233415370-233415680(+)$1	1	226	239	9.3876
)))))))))))))	chr9:19380003-19380261(-)$1	1	211	224	9.3068
).)))))))....	chr3:38167813-38168084(-)$1	1	225	238	6.9917

#PSSM
J : 0.35	H : 0.16	I : 0.15	} : 0.10	F : 0.08	C : 0.05	E : 0.03	D : 0.01	g : 0.01	Z : 0.01	
J : 0.35	H : 0.30	I : 0.15	F : 0.10	} : 0.06	C : 0.01	
J : 0.35	H : 0.30	I : 0.15	G : 0.08	} : 0.06	F : 0.03	
J : 0.35	H : 0.30	I : 0.15	F : 0.08	G : 0.08	} : 0.01	
J : 0.35	H : 0.30	I : 0.15	F : 0.10	G : 0.08	
J : 0.35	H : 0.30	I : 0.15	F : 0.10	G : 0.08	
J : 0.33	H : 0.28	I : 0.15	F : 0.10	G : 0.08	} : 0.01	C : 0.01	
J : 0.32	H : 0.28	I : 0.13	F : 0.08	G : 0.08	C : 0.03	} : 0.03	B : 0.01	
J : 0.30	H : 0.13	I : 0.11	{ : 0.10	F : 0.08	G : 0.08	E : 0.03	C : 0.03	} : 0.03	B : 0.01	D : 0.01	A : 0.01	Y : 0.01	
} : 0.27	Y : 0.20	C : 0.10	Z : 0.08	D : 0.06	E : 0.05	F : 0.05	B : 0.05	~ : 0.05	J : 0.03	_ : 0.01	: : 0.01	
Y : 0.18	C : 0.16	B : 0.11	E : 0.10	D : 0.10	Z : 0.08	A : 0.05	} : 0.05	~ : 0.05	: : 0.03	F : 0.03	_ : 0.01	
C : 0.20	D : 0.18	E : 0.13	B : 0.13	Z : 0.08	: : 0.06	} : 0.05	~ : 0.05	F : 0.05	_ : 0.01	A : 0.01	
E : 0.18	D : 0.18	: : 0.13	C : 0.13	F : 0.08	} : 0.06	B : 0.06	~ : 0.05	d : 0.03	_ : 0.01	L : 0.01	A : 0.01	

#score	526.1408121716865
#seq	59
#width	13
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_UTR_m3_run1.txt

#BEAR
iiiiiiiii[ddddmmmmdddd]iiiiiiii	chr17:57918304-57918518(+)$1	214	116	147	14.2474
ddd[bb[gggggggmmmmggggggg]bb]dd	chr22:20073340-20073652(+)$1	312	45	76	11.9833
gggg"""ggggggglllggggggg333gggg	chr20:42142928-42143284(+)$1	356	285	316	11.7054
ee$$$$$ccc[cccmmmmccc]ccc333eee	chr20:62331312-62331612(-)$1	300	49	80	12.0914
ggggggggggggggmmmmggggggg]ggggg	chr14:54421086-54421341(-)$1	255	174	205	13.5979
===========[bbmmmmbb]==========	chr17:57918344-57918564(+)$1	220	164	195	14.9831
"""dddd[ccc[bbmmmmbb]cccdddd]ee	chr19:1104347-1104641(+)$1	294	152	183	10.7401
effffff"""ddddmmmmdddd]ffffff]e	chr12:390957-391224(-)$1	267	110	141	11.7702
effffff"""ddddmmmmdddd]ffffff]e	chr12:390915-391151(-)$1	236	37	68	11.7702
dddd[ccc[eeeeemmmmeeeee]ccc]ddd	chr12:390465-390716(-)$1	251	26	57	11.2826
!!a[bb[eeeee[ammmmaeeeee]bb]a]c	chr17:38077714-38078049(-)$1	335	203	234	11.8643
bbccc!!gggggggmmmmggggggg]ccc66	chr2:55521840-55522096(-)$1	256	156	187	11.8458
G=============mmmm=============	chr15:52970610-52970934(-)$1	324	267	298	14.6315
iiiiiii[ccc[bblllbb]ccciiiiiiii	chr4:83294795-83295071(-)$1	276	172	203	10.7048
===========[bbmmmmbb]==========	chr17:57918318-57918540(+)$1	222	190	221	14.9831
iiiiiiiii[ddddmmmmdddd]iiiiiiii	chr17:57918269-57918501(+)$1	232	151	182	14.2474
ggggggg[ffffffmmmmffffffggggggg	chr20:62572714-62572939(-)$1	225	182	213	11.8456
fffff[adddd[bbmmmmbb]dddd333a]f	chr1:36787625-36787903(+)$1	278	205	236	11.5997
gggggg"""eeeeemmmmeeeee333ggggg	chr12:6797748-6798056(-)$1	308	89	120	14.2299
eee[eeeee!!cccmmmmccc4444eeeee]	chr3:49058276-49058574(-)$1	298	126	157	11.9119
fff[bb[a[eeeeemmmmeeeee333a]bb]	chr6:111136244-111136509(-)$1	265	42	73	12.5500
Gdddd!!gggggggmmmmggggggg22dddd	chr19:991810-992093(+)$1	283	53	84	11.2124
iiiiii[ggggggglllggggggg22iiiii	chr14:56103819-56104141(+)$1	322	71	102	11.5227
d[dddd!!ccc[bbmmmmbb4444ccc4444	chr12:125270543-125270859(-)$1	316	21	52	11.9085
ee[ccc[ccc!!bbmmmmbb333ccccccee	chr14:24036469-24036749(-)$1	280	228	259	12.2733
fffa"""dddd!!ammmma22dddd333a]f	chr3:49045382-49045635(+)$1	253	182	213	11.6390
dd$$$$$gggggggmmmmggggggg22dddd	chr16:87738792-87739095(-)$1	303	147	178	11.2591
==========[cccmmmmccc]=========	chr10:75578138-75578480(-)$1	342	197	228	15.1917
bb"""a[gggggggmmmmggggggg]a333b	chr19:18392190-18392415(-)$1	225	45	76	13.3865
cc"""ccc!!ddddmmmmdddd22cccccc:	chr12:391395-391697(-)$1	302	206	237	11.6666
iiiiii!!bb[cccmmmmccc]bb]iiiiii	chr17:7477342-7477621(+)$1	279	170	201	13.1757
ggggggg!!eeeeemmmmeeeee4444gggg	chr17:57918123-57918349(+)$1	226	37	68	13.6564
"""bb!!gggggggmmmmggggggg]bb333	chr9:97848852-97849069(+)$1	217	142	173	13.0334
::ggggggg[ddddmmmmdddd]gggggggd	chr17:7477026-7477285(+)$1	259	125	156	11.1133
fffff[adddd[bbmmmmbb]dddd333a]f	chr1:36787703-36787979(+)$1	276	127	158	11.5997
hhhhhhh"""ddddmmmmdddd333hhhhhh	chr11:710023-710278(+)$1	255	193	224	11.2701
b!!eeeee!!ddddmmmmdddd4444eeeee	chr15:52971188-52971477(-)$1	289	117	148	12.2322
ddddbb####ddddmmmmdddd4444bb]dd	chr12:109124824-109125115(-)$1	291	162	193	11.7137
ffffff"""eeeeemmmmeeeee22ffffff	chr8:144678424-144678676(-)$1	252	203	234	11.7090
ff"""eeeee[cccmmmmccc]eeeee4444	chr3:195635357-195635616(-)$1	259	222	253	12.0493
d[ccc[bb!!ddddmmmmdddd4444bb]cc	chr1:2122081-2122392(-)$1	311	69	100	12.2480
[ffffff[a[ddddmmmmdddd]a]ffffff	chr19:2270265-2270487(+)$1	222	45	76	11.8036
ggggggg[a!!cccmmmmccc22a]gggggg	chr9:97848101-97848370(+)$1	269	2	33	13.5324
=====[a!!eeeeemmmmeeeee22a]====	chr7:100027475-100027783(+)$1	308	249	280	14.1039
bb[iiiiiiiii[ammmmaiiiiiiiiibbB	chr2:153574597-153574864(+)$1	267	191	222	11.7752
========="""bbmmmmbb333========	chr12:58217991-58218476(-)$1	485	303	334	14.7760
iiiiiiiiibb[bbmmmmbb]bb]iiiiiii	chr3:49058407-49058718(-)$1	311	104	135	12.5877
bb!!eeeeeeeeeemmmmeeeee]eeeee22	chr2:3461836-3462116(+)$1	280	108	139	10.7381
eee!!eeeee[cccmmmmccc]eeeeeeeee	chr22:46508667-46508962(+)$1	295	70	101	11.3977
e####a!!ffffffmmmmffffff22a333e	chr9:97845249-97845474(+)$1	225	23	54	12.1664
eee"""eeeee[bbmmmmbb]eeeee]eeee	chr7:32931162-32931508(-)$1	346	292	323	11.4909
####ccc"""ddddmmmmdddd333ccc444	chr17:36925639-36925933(-)$1	294	3	34	13.5865
==========[cccmmmmccc22========	chrX:153236893-153237214(-)$1	321	17	48	14.8522
!!bb[bbgggggggmmmmggggggg]bb]bb	chr19:2270119-2270432(+)$1	313	108	139	11.3882
ggggggg!!eeeeemmmmeeeee22gggggg	chr19:41770831-41771102(+)$1	271	84	115	13.3398

#otherMatches

#Seq PSSM
GGGAGGAAAAUAAACAAUUUUACUUUUUUCC	chr17:57918304-57918518(+)$1	214	116	147	14.2474
ACGCGCCCGGGUCUCAGCGGACUUGUGCAUG	chr22:20073340-20073652(+)$1	312	45	76	11.9833
CUCCGAGAUGGGUCAAGGACCCGUACGGGAG	chr20:42142928-42143284(+)$1	356	285	316	11.7054
UUUCCACAGGGCGCAGCGGCGGCCUUUCGAG	chr20:62331312-62331612(-)$1	300	49	80	12.0914
UCACCGUUUUCUCGACUCCGGGGAACAUGGU	chr14:54421086-54421341(-)$1	255	174	205	13.5979
CAGGCCAGAAAUGCCUGGGUUUUUUUGGuuu	chr17:57918344-57918564(+)$1	220	164	195	14.9831
GAGGGCCACGGCGGGGCGUCUCCGGGCCGAG	chr19:1104347-1104641(+)$1	294	152	183	10.7401
CUUUGCUUCUGCGCUUCUGUGCUAGCAGGUG	chr12:390957-391224(-)$1	267	110	141	11.7702
CUUUGCUUCUGCGCUUCUGUGCUAGCAGGUG	chr12:390915-391151(-)$1	236	37	68	11.7702
UACUUCUUUGGAUAUGAAUGUCCCAAGUGGU	chr12:390465-390716(-)$1	251	26	57	11.2826
AACUUGGCCCUGACUCCUGCGGGGGUAUGGG	chr17:38077714-38078049(-)$1	335	203	234	11.8643
UCACAUUUUUUGUUGCCUGAUAAGAUUGUUA	chr2:55521840-55522096(-)$1	256	156	187	11.8458
CGGAGGUGCCUCUGUUUCCAGAGGCGUUUUU	chr15:52970610-52970934(-)$1	324	267	298	14.6315
UGCUGCUAGUUUCGGUUCGCGGCAGCGGCGG	chr4:83294795-83295071(-)$1	276	172	203	10.7048
CAGGCCAGAAAUGCCUGGGUUUUUUUGGuuu	chr17:57918318-57918540(+)$1	222	190	221	14.9831
GGGAGGAAAAUAAACAAUUUUACUUUUUUCC	chr17:57918269-57918501(+)$1	232	151	182	14.2474
UCGCCUUUGCCUGACAGCUCAGGUAGGGCGA	chr20:62572714-62572939(-)$1	225	182	213	11.8456
GGGUAGCUCUGAGCUCAUGUGCAGGUCCGGU	chr1:36787625-36787903(+)$1	278	205	236	11.5997
UGUCUCAGGGGAGCGAAGGUUUUGAGGGGAC	chr12:6797748-6798056(-)$1	308	89	120	14.2299
GCGCGCUUCCCUCCUGACGGAUUCCGAAGCC	chr3:49058276-49058574(-)$1	298	126	157	11.9119
cgggcggcgcgcgcgcgcgcgcgAGAGGCGG	chr6:111136244-111136509(-)$1	265	42	73	12.5500
gcggggacugcccuggauggggcggaacuug	chr19:991810-992093(+)$1	283	53	84	11.2124
UGUAAAAUGUAAUGUUUUAUUACAGAUUUAC	chr14:56103819-56104141(+)$1	322	71	102	11.5227
CCUCAGAUCGGACCCUCUGGCCAACCGCAGC	chr12:125270543-125270859(-)$1	316	21	52	11.9085
GGUGGUGCCUUCGCUGAAGCUUCAGGACCUC	chr14:24036469-24036749(-)$1	280	228	259	12.2733
GGGCGGUGCCCGGGGAAGCAGGGGCUGAGAC	chr3:49045382-49045635(+)$1	253	182	213	11.6390
GGAUUCCUGGGCGGAGCUCUGCCUGCCCCAC	chr16:87738792-87739095(-)$1	303	147	178	11.2591
GCAGCCUUUUGCUCCUGUGAGGAAAGGGUUG	chr10:75578138-75578480(-)$1	342	197	228	15.1917
gcggacgggggggcgcgggccccccgggagg	chr19:18392190-18392415(-)$1	225	45	76	13.3865
CAUAAUGUACUUuaauaauaaaaaacauggc	chr12:391395-391697(-)$1	302	206	237	11.6666
CGGCUGUCAGGAUUUCUGAGUGCUUCGGUCG	chr17:7477342-7477621(+)$1	279	170	201	13.1757
AUUUCUUGGUUUGUGAAAACAGGAGAGGAGA	chr17:57918123-57918349(+)$1	226	37	68	13.6564
UCCUCCUAGCCUGGGGGACCAGGCUCGAACU	chr9:97848852-97849069(+)$1	217	142	173	13.0334
CGUGGGGGGAAGGGGAUGUCCUACCCUCCGA	chr17:7477026-7477285(+)$1	259	125	156	11.1133
GGGUAGCUCUGAGCUCAUGUGCAGGUCCGGU	chr1:36787703-36787979(+)$1	276	127	158	11.5997
CCUUCUCCAAGGGGGCUUCCCUGGAGGGAGG	chr11:710023-710278(+)$1	255	193	224	11.2701
UGAGGCGCGGGUGGAUGGCCACAGGGGCGCC	chr15:52971188-52971477(-)$1	289	117	148	12.2322
UGAAGCAGGGUCCCUGUGGGGAGGAGGCUUU	chr12:109124824-109125115(-)$1	291	162	193	11.7137
CCUAGACCUGCCUCUGUAGAGGCUUUCUGGG	chr8:144678424-144678676(-)$1	252	203	234	11.7090
CUGAAGCUGUGUCUGCGGGGAGGCAGCGGAA	chr3:195635357-195635616(-)$1	259	222	253	12.0493
CAAGGGUAAAACGGCGCGCCGUGGACUGGUC	chr1:2122081-2122392(-)$1	311	69	100	12.2480
CGAGCGUGCGCUGCGGGAGCGGGGAGCGCUU	chr19:2270265-2270487(+)$1	222	45	76	11.8036
AGUCGUGUGAAAUCAUGUGGUAGCUCAUGGC	chr9:97848101-97848370(+)$1	269	2	33	13.5324
CGGCCCCACGGUGCCACCGCACCAAGAGGCC	chr7:100027475-100027783(+)$1	308	249	280	14.1039
GCGCGCUCCCGUUGGUGACGCGGGGGUGGCG	chr2:153574597-153574864(+)$1	267	191	222	11.7752
GGUGAAGGUACCCAGUACUGCAAACCUUCAU	chr12:58217991-58218476(-)$1	485	303	334	14.7760
CUCCUGGGGCCGGUCGCAAUGGGUUUCCGGG	chr3:49058407-49058718(-)$1	311	104	135	12.5877
UGGAAACCCCUUGGGGGACUGGGUGGGUUGA	chr2:3461836-3462116(+)$1	280	108	139	10.7381
UGGAACCCUGGCUGGGAGCGGGCAGGGCCAG	chr22:46508667-46508962(+)$1	295	70	101	11.3977
GGCCACUUCAGGUUUUAUAAUCUGUUGAAAC	chr9:97845249-97845474(+)$1	225	23	54	12.1664
cggaggggcccAGUGUGGACGGGGCCACCGG	chr7:32931162-32931508(-)$1	346	292	323	11.4909
UCAGCCAGAGCCAGAGAGCUGGAUAUGGGGU	chr17:36925639-36925933(-)$1	294	3	34	13.5865
CGCUUCGGGGCCUAACUCUAGCUCUUUGAAG	chrX:153236893-153237214(-)$1	321	17	48	14.8522
GGCGGGGUCGGCCUUGGGGGGCUGGUCCGCG	chr19:2270119-2270432(+)$1	313	108	139	11.3882
GCCUCUGGGUUUCGGAGGUGAGGGACGGGGG	chr19:41770831-41771102(+)$1	271	84	115	13.3398

#DB
(((((((((.((((....)))).))))))))	chr17:57918304-57918518(+)$1	1	116	147	14.2474
(((.((.(((((((....))))))).)).))	chr22:20073340-20073652(+)$1	1	45	76	11.9833
((((...(((((((...)))))))...))))	chr20:42142928-42143284(+)$1	1	285	316	11.7054
((.....(((.(((....))).)))...)))	chr20:62331312-62331612(-)$1	1	49	80	12.0914
((((((((((((((....))))))).)))))	chr14:54421086-54421341(-)$1	1	174	205	13.5979
(((((((((((.((....)).))))))))))	chr17:57918344-57918564(+)$1	1	164	195	14.9831
...((((.(((.((....)).))))))).))	chr19:1104347-1104641(+)$1	1	152	183	10.7401
(((((((...((((....)))).)))))).)	chr12:390957-391224(-)$1	1	110	141	11.7702
(((((((...((((....)))).)))))).)	chr12:390915-391151(-)$1	1	37	68	11.7702
((((.(((.(((((....))))).))).)))	chr12:390465-390716(-)$1	1	26	57	11.2826
..(.((.(((((.(....)))))).)).).)	chr17:38077714-38078049(-)$1	1	203	234	11.8643
(((((..(((((((....))))))).)))..	chr2:55521840-55522096(-)$1	1	156	187	11.8458
)(((((((((((((....)))))))))))))	chr15:52970610-52970934(-)$1	1	267	298	14.6315
(((((((.(((.((...)).)))))))))))	chr4:83294795-83295071(-)$1	1	172	203	10.7048
(((((((((((.((....)).))))))))))	chr17:57918318-57918540(+)$1	1	190	221	14.9831
(((((((((.((((....)))).))))))))	chr17:57918269-57918501(+)$1	1	151	182	14.2474
(((((((.((((((....)))))))))))))	chr20:62572714-62572939(-)$1	1	182	213	11.8456
(((((.(((((.((....)).))))...).)	chr1:36787625-36787903(+)$1	1	205	236	11.5997
((((((...(((((....)))))...)))))	chr12:6797748-6798056(-)$1	1	89	120	14.2299
(((.(((((..(((....)))....))))).	chr3:49058276-49058574(-)$1	1	126	157	11.9119
(((.((.(.(((((....)))))...).)).	chr6:111136244-111136509(-)$1	1	42	73	12.5500
(((((..(((((((....)))))))..))))	chr19:991810-992093(+)$1	1	53	84	11.2124
((((((.(((((((...)))))))..)))))	chr14:56103819-56104141(+)$1	1	71	102	11.5227
(.((((..(((.((....))....)))....	chr12:125270543-125270859(-)$1	1	21	52	11.9085
((.(((.(((..((....))...))))))))	chr14:24036469-24036749(-)$1	1	228	259	12.2733
((((...((((..(....)..))))...).)	chr3:49045382-49045635(+)$1	1	182	213	11.6390
((.....(((((((....)))))))..))))	chr16:87738792-87739095(-)$1	1	147	178	11.2591
((((((((((.(((....))).)))))))))	chr10:75578138-75578480(-)$1	1	197	228	15.1917
((...(.(((((((....))))))).)...)	chr19:18392190-18392415(-)$1	1	45	76	13.3865
((...(((..((((....))))..)))))).	chr12:391395-391697(-)$1	1	206	237	11.6666
((((((..((.(((....))).)).))))))	chr17:7477342-7477621(+)$1	1	170	201	13.1757
(((((((..(((((....)))))....))))	chr17:57918123-57918349(+)$1	1	37	68	13.6564
...((..(((((((....))))))).))...	chr9:97848852-97849069(+)$1	1	142	173	13.0334
..(((((((.((((....)))).)))))))(	chr17:7477026-7477285(+)$1	1	125	156	11.1133
(((((.(((((.((....)).))))...).)	chr1:36787703-36787979(+)$1	1	127	158	11.5997
(((((((...((((....))))...))))))	chr11:710023-710278(+)$1	1	193	224	11.2701
(..(((((..((((....))))....)))))	chr15:52971188-52971477(-)$1	1	117	148	12.2322
((((((....((((....))))....)).))	chr12:109124824-109125115(-)$1	1	162	193	11.7137
((((((...(((((....)))))..))))))	chr8:144678424-144678676(-)$1	1	203	234	11.7090
((...(((((.(((....))).)))))....	chr3:195635357-195635616(-)$1	1	222	253	12.0493
(.(((.((..((((....))))....)).))	chr1:2122081-2122392(-)$1	1	69	100	12.2480
.((((((.(.((((....)))).).))))))	chr19:2270265-2270487(+)$1	1	45	76	11.8036
(((((((.(..(((....)))..).))))))	chr9:97848101-97848370(+)$1	1	2	33	13.5324
(((((.(..(((((....)))))..).))))	chr7:100027475-100027783(+)$1	1	249	280	14.1039
((.(((((((((.(....)))))))))))))	chr2:153574597-153574864(+)$1	1	191	222	11.7752
(((((((((...((....))...))))))))	chr12:58217991-58218476(-)$1	1	303	334	14.7760
(((((((((((.((....)).)).)))))))	chr3:49058407-49058718(-)$1	1	104	135	12.5877
((..((((((((((....))))).)))))..	chr2:3461836-3462116(+)$1	1	108	139	10.7381
(((..(((((.(((....))).)))))))))	chr22:46508667-46508962(+)$1	1	70	101	11.3977
(....(..((((((....))))))..)...)	chr9:97845249-97845474(+)$1	1	23	54	12.1664
(((...(((((.((....)).))))).))))	chr7:32931162-32931508(-)$1	1	292	323	11.4909
....(((...((((....))))...)))...	chr17:36925639-36925933(-)$1	1	3	34	13.5865
((((((((((.(((....)))..))))))))	chrX:153236893-153237214(-)$1	1	17	48	14.8522
..((.(((((((((....))))))).)).))	chr19:2270119-2270432(+)$1	1	108	139	11.3882
(((((((..(((((....)))))..))))))	chr19:41770831-41771102(+)$1	1	84	115	13.3398

#PSSM
e : 0.14	g : 0.12	i : 0.10	d : 0.10	= : 0.10	f : 0.10	b : 0.09	" : 0.03	! : 0.03	G : 0.03	c : 0.01	: : 0.01	h : 0.01	[ : 0.01	# : 0.01	
f : 0.16	g : 0.12	= : 0.12	i : 0.10	d : 0.09	e : 0.09	b : 0.07	! : 0.05	" : 0.03	[ : 0.03	# : 0.03	c : 0.01	: : 0.01	h : 0.01	
g : 0.14	f : 0.14	= : 0.12	i : 0.10	d : 0.09	" : 0.09	e : 0.05	$ : 0.03	c : 0.03	[ : 0.03	! : 0.03	# : 0.03	a : 0.01	h : 0.01	b : 0.01	
g : 0.14	i : 0.12	= : 0.12	f : 0.10	d : 0.09	[ : 0.07	" : 0.07	c : 0.05	$ : 0.03	b : 0.03	! : 0.03	# : 0.03	a : 0.01	h : 0.01	e : 0.01	
i : 0.12	g : 0.12	= : 0.12	" : 0.10	f : 0.10	b : 0.09	c : 0.07	d : 0.05	e : 0.05	$ : 0.03	[ : 0.03	h : 0.01	! : 0.01	# : 0.01	
i : 0.12	g : 0.12	= : 0.10	b : 0.09	e : 0.09	f : 0.07	c : 0.07	[ : 0.07	" : 0.05	! : 0.05	$ : 0.03	d : 0.03	a : 0.03	h : 0.01	
[ : 0.10	g : 0.10	= : 0.10	! : 0.10	e : 0.10	i : 0.09	" : 0.07	f : 0.05	c : 0.05	a : 0.05	$ : 0.03	b : 0.03	d : 0.01	h : 0.01	# : 0.01	
g : 0.20	e : 0.12	= : 0.10	" : 0.10	! : 0.10	[ : 0.09	i : 0.07	c : 0.07	d : 0.05	a : 0.01	# : 0.01	b : 0.01	
g : 0.20	= : 0.10	" : 0.10	e : 0.10	! : 0.10	c : 0.09	i : 0.07	d : 0.05	[ : 0.03	f : 0.03	a : 0.03	b : 0.01	# : 0.01	
e : 0.21	g : 0.18	c : 0.09	= : 0.09	" : 0.09	! : 0.09	[ : 0.07	d : 0.05	f : 0.03	b : 0.03	# : 0.01	i : 0.01	
d : 0.27	g : 0.18	e : 0.18	[ : 0.10	= : 0.05	c : 0.05	! : 0.05	f : 0.03	i : 0.01	" : 0.01	b : 0.01	
d : 0.21	g : 0.18	[ : 0.16	e : 0.16	c : 0.14	f : 0.03	! : 0.03	= : 0.01	i : 0.01	" : 0.01	
d : 0.21	b : 0.20	g : 0.18	c : 0.14	e : 0.14	[ : 0.03	f : 0.03	= : 0.01	! : 0.01	
d : 0.21	b : 0.20	g : 0.18	c : 0.14	e : 0.14	a : 0.05	f : 0.03	= : 0.01	
m : 0.94	l : 0.05	
m : 0.94	l : 0.05	
m : 0.94	l : 0.05	
m : 0.94	g : 0.03	b : 0.01	
d : 0.21	b : 0.20	g : 0.18	c : 0.14	e : 0.14	a : 0.05	f : 0.03	= : 0.01	
d : 0.21	g : 0.18	b : 0.18	e : 0.16	c : 0.14	f : 0.03	= : 0.01	] : 0.01	2 : 0.01	i : 0.01	
d : 0.21	g : 0.18	c : 0.16	e : 0.16	] : 0.12	f : 0.03	3 : 0.03	= : 0.01	4 : 0.01	2 : 0.01	i : 0.01	
d : 0.27	g : 0.18	e : 0.18	] : 0.09	= : 0.05	c : 0.03	f : 0.03	4 : 0.03	3 : 0.03	2 : 0.03	i : 0.01	b : 0.01	
e : 0.21	g : 0.18	] : 0.10	4 : 0.09	= : 0.07	3 : 0.07	c : 0.05	d : 0.05	2 : 0.05	f : 0.03	b : 0.03	i : 0.01	
g : 0.20	= : 0.10	4 : 0.10	i : 0.07	f : 0.07	e : 0.07	3 : 0.07	2 : 0.07	c : 0.05	] : 0.05	d : 0.05	a : 0.03	b : 0.01	
g : 0.18	= : 0.10	i : 0.09	3 : 0.09	c : 0.09	4 : 0.09	2 : 0.09	d : 0.07	] : 0.07	e : 0.07	f : 0.03	
3 : 0.12	i : 0.10	] : 0.10	= : 0.10	c : 0.09	e : 0.09	f : 0.07	g : 0.07	2 : 0.07	4 : 0.07	d : 0.01	b : 0.01	h : 0.01	a : 0.01	
i : 0.12	b : 0.10	g : 0.10	= : 0.10	c : 0.10	3 : 0.09	e : 0.09	f : 0.07	a : 0.05	2 : 0.03	] : 0.03	d : 0.01	4 : 0.01	h : 0.01	
g : 0.14	i : 0.12	= : 0.12	3 : 0.10	b : 0.09	e : 0.09	f : 0.07	c : 0.07	d : 0.05	] : 0.05	4 : 0.03	h : 0.01	
g : 0.14	= : 0.12	i : 0.10	e : 0.10	] : 0.09	f : 0.07	a : 0.07	d : 0.05	c : 0.05	4 : 0.05	3 : 0.05	b : 0.03	h : 0.01	
g : 0.14	e : 0.12	= : 0.12	i : 0.10	] : 0.10	d : 0.09	b : 0.05	4 : 0.05	3 : 0.05	c : 0.03	f : 0.03	6 : 0.01	h : 0.01	2 : 0.01	
e : 0.16	g : 0.12	= : 0.12	i : 0.10	d : 0.10	f : 0.09	4 : 0.05	c : 0.03	] : 0.03	b : 0.03	6 : 0.01	: : 0.01	3 : 0.01	h : 0.01	B : 0.01	2 : 0.01	

#score	685.9874452795477
#seq	55
#width	31
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF530MIN_SRSF1_transcript_m1_run1.txt

#BEAR
ggggg####dddd[ggggggglllggggggg333dddd44	chr20:37049227-37049488(-)$1	261	162	202	12.1943
a[ggggggg!!ccc[bb[aooooooa]bbcccggggggg]	chr22:19958048-19958335(-)$1	287	89	129	15.2427
==========eeeee[bboooooobbeeeee4444=====	chr7:39990987-39991307(+)$1	320	207	247	15.2671
[eeeee[ccc"""ddddnnnnndddd4444ccc333eeee	chr6:36043512-36043788(+)$1	276	87	127	13.0860
==eeeee[ddddbbddddoooooodddd]bb22ddddeee	chr20:62317053-62317334(+)$1	281	81	121	13.0635
hhhhhhhh!!dddd[cccooooooccc22ddddhhhhhhh	chr14:32546555-32546827(+)$1	272	83	123	12.8658
ccc[ccc"""ccccccbbnnnnnbb]ccc]ccc333ccc]	chr14:24711422-24711770(-)$1	348	264	304	13.8292
[ccc!!bb!!ccc[bbrrrrrrrrrbb]ccc22bb]ccc]	chr3:32927398-32927685(+)$1	287	17	57	12.0832
[ggggggg####bb[ddddmmmmdddd]bb22ggggggg]	chr21:46912519-46912727(+)$1	208	17	57	12.4414
ccc####ccc[ccccccooooooccc22ccc]ccc333cc	chr9:72333178-72333511(-)$1	333	23	63	16.0859
!a[eeeee$$$$$ddddoooooodddd]eeeee]a22ccc	chr20:400203-400500(+)$1	297	232	272	13.1610
$$dddd[ccc[ccc!!bboooooobb]ccc]ccc333ddd	chr2:128050979-128051246(-)$1	267	64	104	15.8146
eeeee!!ccc[bb!!ddddmmmmdddd22bbccc333eee	chr14:39735854-39736076(+)$1	222	125	165	12.3730
cc[eeeee[a!!ccc[bboooooobb]ccc22a]eeeee]	chr22:43278111-43278394(-)$1	283	217	257	15.8819
[bb[ffffff[ddddcccooooooccc]dddd333fffff	chr7:99691696-99691970(-)$1	274	98	138	15.0578
dddd[ccc[ccc[ccc!!aooooooa22ccc]ccc]ccc]	chr1:244998896-244999220(+)$1	324	138	178	16.0864
:ccc!!dddd[a"""ddddoooooodddd4444adddd22	chr14:23771822-23772090(-)$1	268	49	89	13.5685
fff[=========="""cccmmmmccc]==========33	chr17:80044138-80044386(-)$1	248	80	120	13.7133
:ccc[dddd"""ffffffooooooffffff333ddddccc	chr20:39794224-39794463(+)$1	239	159	199	13.8314
eee[eeeee[a"""bb[cccmmmmccc]bb333aeeeee]	chr7:23454793-23455129(-)$1	336	35	75	13.0540
eee[bb[bb[bb!!acccooooooccc]a22bb]bb]bb]	chr19:5593852-5594178(-)$1	326	204	244	14.0319
[gggggggccc####cccooooooccc333ccc]gggggg	chr2:70056726-70057069(+)$1	343	49	89	17.6003
e[ggggggg!!ccc[abbaooooooa]bb]a]cccggggg	chr19:50017626-50017870(+)$1	244	10	50	15.4538
eeeeebb####ccc!!cccnnnnnccc22ccc4444bb]e	chr7:150920739-150921039(-)$1	300	81	121	14.8966
gg!!dddd!!a[cccddddllldddd22ccc]a22dddd3	chr14:103571245-103571488(+)$1	243	8	48	13.1060
dddd[eeeee"""a[cccooooooccc]aeeeee]dddd:	chr2:219561255-219561530(+)$1	275	42	82	14.9748
eeeedddd####gggggggnnnnnggggggg4444dddd3	chr9:116982019-116982225(+)$1	206	33	73	13.9100
!!ccc[ccc!!ccc[a[bboooooobb]accc22cccccc	chr2:85846244-85846516(+)$1	272	116	156	16.0335
:eeeee!!bb[bb[ddddoooooodddd]bb]bb22eeee	chr2:210867337-210867641(+)$1	304	25	65	13.0039
gggggggggggbb!!cccooooooccc]bb]gggggggGG	chr20:32257078-32257302(-)$1	224	90	130	14.7740
c[bbbbcccccc"""cccnnnnnccc333ccc]ccc]bb4	chr20:44599879-44600220(-)$1	341	139	179	13.3050
gggg!!bb[cccffffffooooooffffff333ccc]bb2	chr11:124492795-124493094(+)$1	299	149	189	14.5476
:ffffff[==========oooooo==========]fffff	chr16:16259421-16259718(-)$1	297	165	205	14.3763
eeeee[ccc####cccqqqqqqqqccc22ccc333eeeee	chr14:23528416-23528685(-)$1	269	118	158	12.7106
cc[bb####eeeee[cccooooooccceeeee4444bb]c	chr9:117015066-117015312(+)$1	246	98	138	14.8728
!!ddddbb[bb!!a[bboooooobb]a22bb]bb]dddd4	chr19:47634043-47634333(+)$1	290	160	200	13.0820
ffffffccc"""bb!!bboooooobb22bb22ccc]ffff	chr1:93250315-93250625(-)$1	310	189	229	14.8984
!!dddd[ccc[eeeee[annnnna]eeeee]ccc]dddd2	chr7:92462429-92462709(-)$1	280	207	247	11.9994
ddddddddcccccc[a[ccclllccca]ccc333ccc]dd	chr14:21979218-21979519(-)$1	301	138	178	14.3392
]ccceeeee"""dddd[cccmmmmccc]dddd333eeeee	chr11:47236640-47236914(+)$1	274	233	273	12.5042
gggggggaccc[eeeeennnnneeeee]ccc333a]gggg	chr10:99504499-99504770(+)$1	271	21	61	12.3970
[eeeee[acccccc[cccooooooccc]ccc]ccc]a]ee	chr1:39456853-39457114(+)$1	261	168	208	18.0076
eee!!a[ccc$$$$$cccooooooccc22ccc]a22eeee	chr11:65267034-65267273(+)$1	239	19	59	16.8720
b!!eeeee[ccc####ccclllccc333ccc333eeeee]	chr10:75554220-75554482(+)$1	262	99	139	14.7166
bb[dddd[ffffff[cccooooooccc]ffffffdddd22	chr17:617770-618140(-)$1	370	230	270	13.8413
cffffff[bb[a[eeeeeooooooeeeee]a]bb]fffff	chr21:47969604-47969902(+)$1	298	101	141	12.7259
"""dddd!!cccccc[cccnnnnnccc]ccc333ccc22d	chr19:50167777-50168078(-)$1	301	225	265	14.7637
ccbb[dddd!!bb[ccc[aooooooaccc]bb333dddd]	chr19:12876839-12877152(-)$1	313	40	80	15.0960
ggg"""bb!!eeeee[bboooooobbeeeee22bb333gg	chr17:80007641-80007901(-)$1	260	11	51	13.5239
ddd[bb"""ccc[a[cccooooooccc]accc333bb]dd	chr11:62494180-62494548(-)$1	368	310	350	17.3535
ddddbb[bb!!cccggggggglllggggggg4444ccc22	chr1:41494209-41494461(-)$1	252	145	185	12.1864
heeeeedddd[ccc[cccooooooccc]ccc4444dddd]	chr8:145692254-145692545(+)$1	291	24	64	18.2397
==========[a!!ddddnnnnndddd22a]=========	chrX:107858056-107858337(+)$1	281	47	87	13.7625
fff[bb"""a[gggggggooooooggggggg]a333bb33	chr1:160209853-160210171(-)$1	318	204	244	16.1529
"dddd[ccc!!ccc[cccoooooocccccc22ccc]dddd	chr16:28962440-28962692(+)$1	252	39	79	17.2282
!eeeee[ccc[ccc[a[a[bbmmmmbb]a]a]ccc]ccce	chr19:49611073-49611358(+)$1	285	229	269	11.9861

#otherMatches

#Seq PSSM
AUGACUUUAAUAACCAAGAGUUUUAUUUUUGAAUUUGUAG	chr20:37049227-37049488(-)$1	261	162	202	12.1943
UUCUUAGGGCUUGGAUCGUGGAAGAAGGGCCACCCUGAGC	chr22:19958048-19958335(-)$1	287	89	129	15.2427
CUGGGAGGCCGGGACGACAGCCCGGUGUCCCACAGGGCCU	chr7:39990987-39991307(+)$1	320	207	247	15.2671
UGUCUGUUCCUCUUCUGCCCUUUAGAUUCUGGAUUUUGGA	chr6:36043512-36043788(+)$1	276	87	127	13.0860
CCCCUCCAGGUGCACAUCCAUCCUGAUGCUGGUCACCGGA	chr20:62317053-62317334(+)$1	281	81	121	13.0635
UAGGUAGGACCUUGCGGACCCCGCUCCUCCAAGCCUGCCU	chr14:32546555-32546827(+)$1	272	83	123	12.8658
UCUACGCUUCGCCGCCGCGGCUAGCUGGCAGGUUGUGCGC	chr14:24711422-24711770(-)$1	348	264	304	13.8292
GGUUUUCCAGCUGAGCAUCGAGCAGGCCCAGACGGUGGCG	chr3:32927398-32927685(+)$1	287	17	57	12.0832
GUGGGGUCCGGGCAGGCGCGAGGGUGCGUGAUGACCCCAG	chr21:46912519-46912727(+)$1	208	17	57	12.4414
CCAGCAGGCUCCCAGCUGUCUCAAGCAAUGGAAGUAGAUG	chr9:72333178-72333511(-)$1	333	23	63	16.0859
AAGGGAGACACCUGCGCACUGCCGCGCCUCUCCGUUACUG	chr20:400203-400500(+)$1	297	232	272	13.1610
UGAGUCAGGCACCAAAGUGGAUGAAUAUGGAGCCAAGGAC	chr2:128050979-128051246(-)$1	267	64	104	15.8146
CCAGCGAGGCUGCGGAAGGAAAGCCUUGGGUGUCGGGGCU	chr14:39735854-39736076(+)$1	222	125	165	12.3730
UGUGCCCAUGAGCUCAUCAGCCUGGAAGAGGACCUGGGCC	chr22:43278111-43278394(-)$1	283	217	257	15.8819
AGGCUUGGGCUAGUAAGGAUGCCACCUAUACUUCUGCCCG	chr7:99691696-99691970(-)$1	274	98	138	15.0578
CCCGGUGAGCCCGAGGAGAGGAAGGUAACCUGGGGGUcgg	chr1:244998896-244999220(+)$1	324	138	178	16.0864
CGCUAGCAGGAGGCAGGAUGUGAUAGUCUAAGACCCUGGA	chr14:23771822-23772090(-)$1	268	49	89	13.5685
UGCAGGCUUCAGCUCAACGGGAACCUGCAGCUGGAGCUGG	chr17:80044138-80044386(-)$1	248	80	120	13.7133
UGCAUCGAGACCGGAGCCCCUGACGGCUCCUUCCUCGUGC	chr20:39794224-39794463(+)$1	239	159	199	13.8314
GUGAUGCCGACUGACGGAGGGGGACCUGCGGAUGCGGUGA	chr7:23454793-23455129(-)$1	336	35	75	13.0540
UGCGGCGCCAGCAGGAGCAGCUGCGUUACGAGCAGGAGCG	chr19:5593852-5594178(-)$1	326	204	244	14.0319
GCGCCCUCCGUCCCGCGCUUUGUUGCGAAAGCGAGGGGGC	chr2:70056726-70057069(+)$1	343	49	89	17.6003
GCAGCAGGACAAGGCGGCCAACAAGGAGCUCACCUUCCUG	chr19:50017626-50017870(+)$1	244	10	50	15.4538
UCAUGGCCAUACACUGUCCACAGCGGAGUGUGAGAAGCUC	chr7:150920739-150921039(-)$1	300	81	121	14.8966
CUGAUUGGGAGGGUGGACCCAGGGUCAUCGCGCAGCUAGG	chr14:103571245-103571488(+)$1	243	8	48	13.1060
AUCCUUCUGUUGCAGCUCCUCACUGAGGUACAGAUGGAUC	chr2:219561255-219561530(+)$1	275	42	82	14.9748
CUCUCUCAUGCCCUCCAGGGGUUUCCUGGAGUCUUUGGGG	chr9:116982019-116982225(+)$1	206	33	73	13.9100
AUUCUGAGGACCGGAGGAGCCGCCACUGCCCGUACCUGGA	chr2:85846244-85846516(+)$1	272	116	156	16.0335
ACUUGCUUUUGGGAGCCAGCGGUAUGGCGUCGGGCUGCAA	chr2:210867337-210867641(+)$1	304	25	65	13.0039
CAGUGCUCGCUGCCAUGGAUGCCACCAAGCUGGUGAGUGG	chr20:32257078-32257302(-)$1	224	90	130	14.7740
UACGCCCCGCUGUCAGGCAGCCCGCCGAUCAGAUGGAGGA	chr20:44599879-44600220(-)$1	341	139	179	13.3050
GCAGCGUCCUGGGGCCCCCGUAGCGGGGCUGGACCAUGAG	chr11:124492795-124493094(+)$1	299	149	189	14.5476
UGGUGGUGGCAGUGGCUACCCCACUGGCCACUGUGGCCAU	chr16:16259421-16259718(-)$1	297	165	205	14.3763
CCGACAGCUGGAGCGAGAGAAACGUCGGGAGCACAGUCgg	chr14:23528416-23528685(-)$1	269	118	158	12.7106
CCUGGAAUGCCAGGUGGUAUGGGGACCCCUGGAGAGCCUG	chr9:117015066-117015312(+)$1	246	98	138	14.8728
AGGCUGGCGGCGGCAUUAGCGAGGAGGAGGCGGCACAGUA	chr19:47634043-47634333(+)$1	290	160	200	13.0820
UGGGAAGUUAAUGUUUACGGCGAAGUCUACUCAACGUUUC	chr1:93250315-93250625(-)$1	310	189	229	14.8984
CGGGUGCAGACCGGCGAGGAGGGCAUGCCGCUCUCCACCA	chr7:92462429-92462709(-)$1	280	207	247	11.9994
GGGCUGGGAGACUAGGAUGUCGGACACGUGGAGCUCUAUC	chr14:21979218-21979519(-)$1	301	138	178	14.3392
UGCAGCGGGGGAUGGGUGCUCCGAGGCUCCCGAGGCCCGC	chr11:47236640-47236914(+)$1	274	233	273	12.5042
GUGCCCGCCCUGCUGGGCUACCUUCAGGAGGUUUGCCGGG	chr10:99504499-99504770(+)$1	271	21	61	12.3970
GUCCGCUCCCGGUCCCUGGCCCCUCAGCGGCAUGGCGUGC	chr1:39456853-39457114(+)$1	261	168	208	18.0076
CUAaacgcagacgaaaauggaaagauuaauugggaguggu	chr11:65267034-65267273(+)$1	239	19	59	16.8720
GGCCCCCAAGUCGCAACUGGAACAGCGAGACACCUGGGGA	chr10:75554220-75554482(+)$1	262	99	139	14.7166
GAAGCCGUGCUGCAGCUCACGCCCGAGGUGCAGCUGGCCA	chr17:617770-618140(-)$1	370	230	270	13.8413
GUGCUGCACGACGACCGGAUUGUCCUGGUGGCUGAGCAGC	chr21:47969604-47969902(+)$1	298	101	141	12.7259
GAAGGCGGAGGUGGCGCGCGAGGGGCGGGCUCGUGCCAAC	chr19:50167777-50168078(-)$1	301	225	265	14.7637
CCAGCGAGCCUGCGAGGUGACUCGACCCUGGCCCUGCUCU	chr19:12876839-12877152(-)$1	313	40	80	15.0960
AUCUUCAGGUGACCACGGUCAAGUUCUGGUUUGCUACUGG	chr17:80007641-80007901(-)$1	260	11	51	13.5239
CCGGCGGAGGCCACGGCCGGGUCAGGCGGGGUAAAUGGUG	chr11:62494180-62494548(-)$1	368	310	350	17.3535
GCAGUUUGUCCGGGAAGCUGAUCCUCAGCUUGGACCCCAC	chr1:41494209-41494461(-)$1	252	145	185	12.1864
GGGCGGAGGCCUGGCUCAAGCACGUGACCCGAAAUGUCUC	chr8:145692254-145692545(+)$1	291	24	64	18.2397
UUGCUUUUAAUAUUUAAACUGUAUUUAUUUCUUAAAGGUG	chrX:107858056-107858337(+)$1	281	47	87	13.7625
GGAGGACACUGGUCAUUACUCCAUUAAUGAUGAAAAUCGA	chr1:160209853-160210171(-)$1	318	204	244	16.1529
UUGGUCACCGACAGCGAUGAGGAAAUUCUGGAGGUCGCCA	chr16:28962440-28962692(+)$1	252	39	79	17.2282
AGGAGGAGCUGCGUGGCGGCGGUGGCGACAUGGCGGAGCC	chr19:49611073-49611358(+)$1	285	229	269	11.9861

#DB
(((((....((((.(((((((...)))))))...))))..	chr20:37049227-37049488(-)$1	1	162	202	12.1943
(.(((((((..(((.((.(......).)))))))))))).	chr22:19958048-19958335(-)$1	1	89	129	15.2427
(((((((((((((((.((......)))))))....)))))	chr7:39990987-39991307(+)$1	1	207	247	15.2671
.(((((.(((...((((.....))))....)))...))))	chr6:36043512-36043788(+)$1	1	87	127	13.0860
))(((((.((((((((((......)))).))..)))))))	chr20:62317053-62317334(+)$1	1	81	121	13.0635
((((((((..((((.(((......)))..)))))))))))	chr14:32546555-32546827(+)$1	1	83	123	12.8658
(((.(((...((((((((.....)).))).)))...))).	chr14:24711422-24711770(-)$1	1	264	304	13.8292
.(((..((..(((.((.........)).)))..)).))).	chr3:32927398-32927685(+)$1	1	17	57	12.0832
.(((((((....((.((((....)))).))..))))))).	chr21:46912519-46912727(+)$1	1	17	57	12.4414
(((....(((.((((((......)))..))).)))...))	chr9:72333178-72333511(-)$1	1	23	63	16.0859
.(.(((((.....((((......)))).))))).)..)))	chr20:400203-400500(+)$1	1	232	272	13.1610
..((((.(((.(((..((......)).))).)))...)))	chr2:128050979-128051246(-)$1	1	64	104	15.8146
(((((..(((.((..((((....))))..)))))...)))	chr14:39735854-39736076(+)$1	1	125	165	12.3730
((.(((((.(..(((.((......)).)))..).))))).	chr22:43278111-43278394(-)$1	1	217	257	15.8819
.((.((((((.(((((((......))).))))...)))))	chr7:99691696-99691970(-)$1	1	98	138	15.0578
((((.(((.(((.(((..(......)..))).))).))).	chr1:244998896-244999220(+)$1	1	138	178	16.0864
.(((..((((.(...((((......))))....)))))..	chr14:23771822-23772090(-)$1	1	49	89	13.5685
(((.((((((((((...(((....))).))))))))))..	chr17:80044138-80044386(-)$1	1	80	120	13.7133
.(((.((((...((((((......))))))...)))))))	chr20:39794224-39794463(+)$1	1	159	199	13.8314
(((.(((((.(...((.(((....))).))...)))))).	chr7:23454793-23455129(-)$1	1	35	75	13.0540
(((.((.((.((..((((......))).)..)).)).)).	chr19:5593852-5594178(-)$1	1	204	244	14.0319
.((((((((((....(((......)))...))).))))))	chr2:70056726-70057069(+)$1	1	49	89	17.6003
(.(((((((..(((.((((......).)).).))))))))	chr19:50017626-50017870(+)$1	1	10	50	15.4538
(((((((....(((..(((.....)))..)))....)).)	chr7:150920739-150921039(-)$1	1	81	121	14.8966
((..((((..(.(((((((...))))..))).)..)))).	chr14:103571245-103571488(+)$1	1	8	48	13.1060
((((.(((((...(.(((......))).)))))).)))).	chr2:219561255-219561530(+)$1	1	42	82	14.9748
((((((((....(((((((.....)))))))....)))).	chr9:116982019-116982225(+)$1	1	33	73	13.9100
..(((.(((..(((.(.((......)).))))..))))))	chr2:85846244-85846516(+)$1	1	116	156	16.0335
.(((((..((.((.((((......)))).)).))..))))	chr2:210867337-210867641(+)$1	1	25	65	13.0039
))))(((((((((..(((......))).)).)))))))))	chr20:32257078-32257302(-)$1	1	90	130	14.7740
(.((((((((((...(((.....)))...))).))).)).	chr20:44599879-44600220(-)$1	1	139	179	13.3050
((((..((.(((((((((......))))))...))).)).	chr11:124492795-124493094(+)$1	1	149	189	14.5476
.((((((.((((((((((......)))))))))).)))))	chr16:16259421-16259718(-)$1	1	165	205	14.3763
(((((.(((....(((........)))..)))...)))))	chr14:23528416-23528685(-)$1	1	118	158	12.7106
((.((....(((((.(((......))))))))....)).)	chr9:117015066-117015312(+)$1	1	98	138	14.8728
..((((((.((..(.((......)).)..)).)).)))).	chr19:47634043-47634333(+)$1	1	160	200	13.0820
(((((((((...((..((......))..))..))).))))	chr1:93250315-93250625(-)$1	1	189	229	14.8984
..((((.(((.(((((.(.....).))))).))).)))).	chr7:92462429-92462709(-)$1	1	207	247	11.9994
((((((((((((((.(.(((...)))).)))...))).))	chr14:21979218-21979519(-)$1	1	138	178	14.3392
.)))(((((...((((.(((....))).))))...)))))	chr11:47236640-47236914(+)$1	1	233	273	12.5042
(((((((((((.(((((.....))))).)))...).))))	chr10:99504499-99504770(+)$1	1	21	61	12.3970
.(((((.(((((((.(((......))).))).))).).))	chr1:39456853-39457114(+)$1	1	168	208	18.0076
(((..(.(((.....(((......)))..))).)..))))	chr11:65267034-65267273(+)$1	1	19	59	16.8720
(..(((((.(((....(((...)))...)))...))))).	chr10:75554220-75554482(+)$1	1	99	139	14.7166
((.((((.((((((.(((......))).))))))))))..	chr17:617770-618140(-)$1	1	230	270	13.8413
(((((((.((.(.(((((......))))).).)).)))))	chr21:47969604-47969902(+)$1	1	101	141	12.7259
...((((..((((((.(((.....))).)))...)))..)	chr19:50167777-50168078(-)$1	1	225	265	14.7637
((((.((((..((.(((.(......)))).))...)))).	chr19:12876839-12877152(-)$1	1	40	80	15.0960
(((...((..(((((.((......)))))))..))...))	chr17:80007641-80007901(-)$1	1	11	51	13.5239
(((.((...(((.(.(((......))).))))...)).))	chr11:62494180-62494548(-)$1	1	310	350	17.3535
((((((.((..((((((((((...)))))))....)))..	chr1:41494209-41494461(-)$1	1	145	185	12.1864
((((((((((.(((.(((......))).)))....)))).	chr8:145692254-145692545(+)$1	1	24	64	18.2397
((((((((((.(..((((.....))))..).)))))))))	chrX:107858056-107858337(+)$1	1	47	87	13.7625
(((.((...(.(((((((......))))))).)...))..	chr1:160209853-160210171(-)$1	1	204	244	16.1529
.((((.(((..(((.(((......))))))..))).))))	chr16:28962440-28962692(+)$1	1	39	79	17.2282
.(((((.(((.(((.(.(.((....)).).).))).))))	chr19:49611073-49611358(+)$1	1	229	269	11.9861

#PSSM
e : 0.14	c : 0.12	g : 0.10	[ : 0.10	! : 0.08	d : 0.08	: : 0.07	= : 0.05	f : 0.05	h : 0.03	b : 0.03	" : 0.03	a : 0.01	$ : 0.01	] : 0.01	
e : 0.21	c : 0.16	g : 0.14	d : 0.10	f : 0.08	! : 0.07	[ : 0.05	= : 0.05	b : 0.03	h : 0.01	a : 0.01	$ : 0.01	" : 0.01	
e : 0.23	g : 0.16	d : 0.16	c : 0.12	f : 0.08	[ : 0.07	b : 0.05	= : 0.03	! : 0.03	h : 0.01	" : 0.01	
e : 0.23	d : 0.17	g : 0.14	[ : 0.12	c : 0.08	b : 0.05	f : 0.05	= : 0.03	! : 0.03	h : 0.01	# : 0.01	" : 0.01	
e : 0.24	d : 0.16	g : 0.12	b : 0.10	! : 0.07	f : 0.07	[ : 0.07	= : 0.05	c : 0.03	h : 0.01	# : 0.01	" : 0.01	
e : 0.21	d : 0.17	g : 0.10	b : 0.10	! : 0.07	f : 0.07	# : 0.05	= : 0.05	[ : 0.05	c : 0.03	h : 0.01	a : 0.01	" : 0.01	
d : 0.16	[ : 0.14	e : 0.12	c : 0.12	g : 0.10	b : 0.08	# : 0.05	= : 0.05	f : 0.05	! : 0.03	" : 0.03	h : 0.01	
c : 0.23	d : 0.12	b : 0.10	e : 0.10	g : 0.08	[ : 0.07	# : 0.05	= : 0.05	" : 0.05	! : 0.03	a : 0.03	h : 0.01	f : 0.01	
c : 0.28	# : 0.08	d : 0.08	! : 0.08	[ : 0.08	= : 0.07	b : 0.07	g : 0.05	" : 0.05	e : 0.05	f : 0.03	$ : 0.01	
c : 0.30	! : 0.17	d : 0.07	= : 0.07	" : 0.07	# : 0.07	b : 0.05	a : 0.03	f : 0.03	[ : 0.03	e : 0.03	$ : 0.01	g : 0.01	
c : 0.21	[ : 0.21	! : 0.12	" : 0.08	# : 0.07	d : 0.05	e : 0.05	$ : 0.03	= : 0.03	a : 0.03	b : 0.03	g : 0.01	f : 0.01	
c : 0.35	" : 0.10	b : 0.08	d : 0.07	e : 0.07	# : 0.07	a : 0.05	$ : 0.03	! : 0.03	= : 0.03	[ : 0.03	f : 0.01	g : 0.01	
c : 0.30	b : 0.12	e : 0.08	" : 0.08	d : 0.07	[ : 0.05	f : 0.05	! : 0.05	# : 0.05	$ : 0.03	= : 0.03	g : 0.03	
c : 0.32	e : 0.10	d : 0.08	[ : 0.07	! : 0.07	b : 0.05	" : 0.05	f : 0.05	a : 0.05	= : 0.03	# : 0.03	g : 0.03	$ : 0.01	
[ : 0.26	c : 0.14	d : 0.12	e : 0.08	! : 0.08	g : 0.07	" : 0.05	b : 0.03	f : 0.03	# : 0.03	a : 0.01	= : 0.01	$ : 0.01	
c : 0.33	d : 0.17	g : 0.07	b : 0.07	[ : 0.07	a : 0.07	! : 0.05	e : 0.05	f : 0.03	" : 0.01	= : 0.01	# : 0.01	
c : 0.33	b : 0.16	d : 0.16	[ : 0.10	g : 0.07	f : 0.03	e : 0.03	r : 0.01	! : 0.01	" : 0.01	= : 0.01	q : 0.01	
c : 0.37	b : 0.14	d : 0.12	g : 0.07	o : 0.05	[ : 0.03	n : 0.03	f : 0.03	a : 0.03	r : 0.01	! : 0.01	= : 0.01	q : 0.01	e : 0.01	
o : 0.49	c : 0.12	n : 0.10	a : 0.07	d : 0.07	g : 0.05	r : 0.01	b : 0.01	q : 0.01	[ : 0.01	
o : 0.60	n : 0.16	c : 0.07	g : 0.03	m : 0.03	l : 0.03	r : 0.01	q : 0.01	b : 0.01	
o : 0.60	n : 0.16	m : 0.08	l : 0.05	g : 0.03	r : 0.01	q : 0.01	b : 0.01	
o : 0.60	n : 0.16	m : 0.10	l : 0.08	r : 0.01	q : 0.01	
o : 0.60	n : 0.12	m : 0.10	l : 0.05	d : 0.03	r : 0.01	q : 0.01	e : 0.01	c : 0.01	
o : 0.55	d : 0.10	c : 0.07	m : 0.07	n : 0.05	l : 0.03	b : 0.03	r : 0.01	q : 0.01	a : 0.01	e : 0.01	
c : 0.41	d : 0.14	b : 0.12	o : 0.10	g : 0.07	f : 0.03	e : 0.03	r : 0.01	= : 0.01	] : 0.01	m : 0.01	
c : 0.39	d : 0.16	b : 0.14	g : 0.07	a : 0.07	e : 0.05	] : 0.03	f : 0.03	= : 0.01	3 : 0.01	
c : 0.37	d : 0.12	e : 0.08	g : 0.07	] : 0.07	2 : 0.07	b : 0.05	f : 0.03	3 : 0.03	a : 0.03	4 : 0.01	= : 0.01	
] : 0.33	2 : 0.19	e : 0.08	c : 0.08	g : 0.07	d : 0.05	3 : 0.05	b : 0.03	f : 0.03	4 : 0.01	= : 0.01	
c : 0.26	2 : 0.12	b : 0.10	e : 0.10	a : 0.08	g : 0.07	d : 0.05	f : 0.05	] : 0.03	= : 0.03	3 : 0.03	4 : 0.01	
c : 0.35	b : 0.14	e : 0.10	] : 0.08	g : 0.07	d : 0.05	f : 0.05	4 : 0.03	= : 0.03	2 : 0.01	3 : 0.01	a : 0.01	
c : 0.35	e : 0.08	b : 0.08	2 : 0.08	g : 0.07	] : 0.07	d : 0.05	3 : 0.05	a : 0.05	= : 0.03	4 : 0.01	f : 0.01	
c : 0.23	] : 0.17	3 : 0.14	2 : 0.12	4 : 0.08	d : 0.05	e : 0.05	= : 0.05	b : 0.03	g : 0.01	f : 0.01	
3 : 0.23	c : 0.23	4 : 0.12	2 : 0.07	b : 0.07	g : 0.05	a : 0.05	= : 0.05	e : 0.03	] : 0.03	d : 0.01	f : 0.01	
3 : 0.23	c : 0.21	4 : 0.10	b : 0.08	] : 0.07	g : 0.05	a : 0.05	= : 0.05	d : 0.03	2 : 0.03	h : 0.01	e : 0.01	f : 0.01	
c : 0.21	3 : 0.17	4 : 0.10	d : 0.08	] : 0.08	g : 0.07	b : 0.05	e : 0.05	2 : 0.05	a : 0.03	= : 0.03	h : 0.01	
d : 0.21	3 : 0.12	] : 0.12	c : 0.10	g : 0.08	e : 0.08	= : 0.05	2 : 0.05	f : 0.05	b : 0.03	4 : 0.03	h : 0.01	
d : 0.23	e : 0.14	c : 0.14	g : 0.10	3 : 0.07	f : 0.07	b : 0.07	= : 0.05	] : 0.05	h : 0.01	2 : 0.01	a : 0.01	
d : 0.21	e : 0.17	c : 0.14	g : 0.10	b : 0.10	f : 0.07	= : 0.05	] : 0.05	3 : 0.03	h : 0.01	2 : 0.01	
e : 0.19	d : 0.19	c : 0.14	g : 0.10	f : 0.07	2 : 0.07	b : 0.05	= : 0.03	3 : 0.03	] : 0.03	4 : 0.01	h : 0.01	G : 0.01	
] : 0.19	e : 0.17	c : 0.08	d : 0.08	2 : 0.08	f : 0.07	3 : 0.07	g : 0.07	4 : 0.05	= : 0.03	h : 0.01	: : 0.01	G : 0.01	

#score	801.9776893020477
#seq	56
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF374GKD_FKBP4_UTR_m2_run1.txt

#BEAR
CCYYCCC}FFFFFF}BB}CCC	chr8:103424361-103424610(-)$1	249	166	187	11.9083
HHCCC~~~~DDDD}AZZZDDD	chr16:725992-726263(+)$1	271	232	253	11.9176
DDDD}BB}FFFFFFZZZEEEE	chr19:575262-575509(+)$1	247	224	245	11.0151
CCC}CCC}CCCCCCZZZBB}D	chr12:123755359-123755634(-)$1	275	200	221	10.7422
HH}EEEEECCCBB}BBZZZHH	chr19:2270197-2270429(+)$1	232	165	186	9.5924
GGYYEEEEE}DDDD}ABBFFF	chr16:4664021-4664282(-)$1	261	208	229	10.4183
FFYYBB}BB}EEEEE}A}EEE	chr17:7211174-7211424(+)$1	250	227	248	12.3671
A}EEEEE}EEEEEAYYBBccc	chr2:242673993-242674363(+)$1	370	308	329	10.0200
CCZZZBB}DDDD}CCC}EEEE	chr7:127671509-127671761(+)$1	252	229	250	10.6043
}EEEEE}A}DDDD}AZZZFFF	chr8:145687972-145688295(-)$1	323	293	314	11.6762
EEEECCCEEEEE}DDDD}CCC	chr17:79860483-79860800(-)$1	317	238	259	9.7353
DDDZZZA}DDDD}CCC}AJJJ	chr17:7477337-7477582(+)$1	245	136	157	9.0066
FFFFFZZZEEEEE}CCCBB}C	chr17:74381036-74381273(+)$1	237	189	210	11.1531
FF?????EEEEEYYA}BB:::	chr17:80190134-80190409(+)$1	275	253	274	9.2841
EEYYCCC}FFFFFF~~~~EEE	chr17:80192190-80192484(+)$1	294	243	264	13.0616
B}EEEEEEEEEEYYBBYYDDD	chr17:79674334-79674589(+)$1	255	220	241	12.1930
CC~~~~IIIIIIIIIZZZFFF	chr16:4661260-4661484(-)$1	224	141	162	9.1872
EEEEEZZZCCC}BB~~~~DDD	chr3:195635834-195636067(-)$1	233	149	170	11.1786
EZZZBB}IIIIIIIIIYYEEE	chr17:63556547-63556789(-)$1	242	170	191	8.4343
:::DDDDYYFFFFFF~~~~GG	chr20:62330408-62330642(-)$1	234	208	229	8.7120
BBYYBB}BBDDDD}BB}IIII	chr16:2579832-2580060(+)$1	228	187	208	10.6873
GGYYBBZZZFFFFFF}CCC}B	chr5:176873734-176873981(-)$1	247	108	129	10.7217
}BB?????FFFFFFA}EEEEE	chr2:85766911-85767161(+)$1	250	224	245	9.7231
FZZZCCCYYDDDD}BB}DDDD	chr16:4400900-4401300(-)$1	400	95	116	11.6137
FFFFFEEEEE}EEEEE}DDDD	chr16:75284644-75284909(-)$1	265	138	159	10.0299
e:BB~~~~EEEEE}CCCDDDD	chr3:49755246-49755516(+)$1	270	236	257	10.4638
BB}BBZZZEEEEE}BBYYBB}	chr2:242447571-242447832(-)$1	261	159	180	12.8508
FBB}CCC}DDDD}FFFFFF}B	chr8:144679309-144679553(-)$1	244	206	227	9.7586
FFFFFFYYEEEEEYYBB}EEE	chr6:151187459-151187742(+)$1	283	254	275	11.8193
ddEEEEE}CCCYYCCCYYDDD	chr22:41488086-41488355(+)$1	269	243	264	9.2710
::EEEEE}DDDDYYCCC}BB:	chr9:140347363-140347614(-)$1	251	229	250	9.6419
FFYYDDDD}FFFFFFZZZIII	chr8:22224983-22225300(+)$1	317	281	302	10.3102
fCCCBBYYEEEEE}EEEEE}A	chr17:79876243-79876491(-)$1	248	183	204	10.6430
CCC}CCCHHHHHHHHYYBBEE	chr19:42758624-42758904(-)$1	280	256	277	7.9562
CCYYDDDDDDDDEEEEE}FFF	chr17:41622773-41623039(+)$1	266	201	222	9.5833
HH}BB}A}FFFFFF______D	chr7:5569508-5569758(-)$1	250	135	156	10.3399
}BB}CCCYYEEEEE______D	chr2:242254385-242254690(-)$1	305	249	270	11.3849
hCCC}BB}BB}BB}BBBB}GG	chr2:183902783-183903052(-)$1	269	209	230	8.4961
JJJ}CCCYYDDDD}FFFFFF}	chr20:57267737-57268015(+)$1	278	189	210	9.0932
DDYYCCC}IIIIIIIIIYYBB	chr16:4660776-4661049(-)$1	273	239	260	8.8090
FFYYCCC}EEEEE}AZZZDDD	chr14:32546358-32546650(+)$1	292	270	291	14.1934
::EEEEE}EEEEEZZZJJJJJ	chr22:39916786-39917047(+)$1	261	199	220	9.5790
FFF}CCCFFFFFF}A}ABBYY	chr19:34287643-34287903(+)$1	260	207	228	11.4595
FFFFFZZZEEEEE}A}DDDD:	chr2:242751891-242752159(+)$1	268	228	249	11.0157
FF}DDDD}A}CCC}A}BB}BB	chr10:102759112-102759369(+)$1	257	184	205	10.6303
EEEEECCC}DDDDZZZDDDD}	chr17:79860000-79860248(-)$1	248	222	243	10.1505
G}BB}BBYYFFFFFF}EEEEE	chr17:36955635-36955924(-)$1	289	264	285	11.0615
BBYYCCCYYEEEEEDDDD{CC	chr17:80193051-80193295(+)$1	244	63	84	10.1884
FF______FFFFFFZZZDDDD	chr11:703346-703625(-)$1	279	252	273	10.7405
}EEEEEYYCCCZZZAZZZEEE	chr14:105260478-105260741(-)$1	263	215	236	11.0120
ZZEEEEE}EEEEECCCBB}BB	chr3:49044987-49045247(+)$1	260	173	194	11.0391
d:EEEEE}EEEEEZZZFFFFF	chr2:183902926-183903187(-)$1	261	100	121	10.4556
CCCYYBB}BBYYEEEEE}BBe	chr19:1882350-1882593(-)$1	243	146	167	9.6462
ZDDDD}A}EEEEE}A}BB}DD	chr19:1474095-1474313(-)$1	218	152	173	11.8714
GG}CCCYYFFFFFF~~~~DDD	chr11:842825-843110(+)$1	285	184	205	11.8423

#otherMatches

#Seq PSSM
GUGGUUCACCCGCUGCCGGGC	chr8:103424361-103424610(-)$1	249	166	187	11.9083
UCCCAAAAGUGCUGGGAGCCU	chr16:725992-726263(+)$1	271	232	253	11.9176
CCGAGCCUCAGAUGAGAGGAG	chr19:575262-575509(+)$1	247	224	245	11.0151
GGUGAGCGCGGAGUGAACGAA	chr12:123755359-123755634(-)$1	275	200	221	10.7422
GGUCCCUGUUGCCUCGAUGUG	chr19:2270197-2270429(+)$1	232	165	186	9.5924
CAGAUGCCGCCCGUGCCCGGC	chr16:4664021-4664282(-)$1	261	208	229	10.4183
UUGAGGACCCGGCUCAGCGCG	chr17:7211174-7211424(+)$1	250	227	248	12.3671
GGCGAGCUCGGAGGAACGGGG	chr2:242673993-242674363(+)$1	370	308	329	10.0200
cgcccgcACCGCAGGCCCCUU	chr7:127671509-127671761(+)$1	252	229	250	10.6043
ggccgcggggcccgcgggcUC	chr8:145687972-145688295(-)$1	323	293	314	11.6762
UCCCGCGGCCGUCGGGGAGCC	chr17:79860483-79860800(-)$1	317	238	259	9.7353
CAGAUUGAUGGCAUCAUGCAG	chr17:7477337-7477582(+)$1	245	136	157	9.0066
CCCCUCCCCCUGGCAGCCCCG	chr17:74381036-74381273(+)$1	237	189	210	11.1531
UUGACUCUGCAGGACGGCAUU	chr17:80190134-80190409(+)$1	275	253	274	9.2841
CUUAGGAAGCCCUUAAAAACC	chr17:80192190-80192484(+)$1	294	243	264	13.0616
GAGUGCCGUGCUCAGGCCGGG	chr17:79674334-79674589(+)$1	255	220	241	12.1930
CCUAGGGCCGUCUUUCUGCUC	chr16:4661260-4661484(-)$1	224	141	162	9.1872
CGUCCGAGUCCGGGGAAGGCC	chr3:195635834-195636067(-)$1	233	149	170	11.1786
UGUGAGUGCGCGCGGGAGUGC	chr17:63556547-63556789(-)$1	242	170	191	8.4343
GAAGCUUCACUUCCCGGAAAG	chr20:62330408-62330642(-)$1	234	208	229	8.7120
GGGAGUGUGGACAGUCAGGGG	chr16:2579832-2580060(+)$1	228	187	208	10.6873
ggcggcggcggcccgggggAG	chr5:176873734-176873981(-)$1	247	108	129	10.7217
GACUAAAUAUAGCUCAUGUCC	chr2:85766911-85767161(+)$1	250	224	245	9.7231
GAGGGGAAGCCGAGUcgggcc	chr16:4400900-4401300(-)$1	400	95	116	11.6137
GCAGCCCCGCACGCCGAGCGC	chr16:75284644-75284909(-)$1	265	138	159	10.0299
UACUGCCAGCUGCACGCGGCC	chr3:49755246-49755516(+)$1	270	236	257	10.4638
guggcggggccccggcggccU	chr2:242447571-242447832(-)$1	261	159	180	12.8508
CGCAGAGAGGCGGGGCGACGG	chr8:144679309-144679553(-)$1	244	206	227	9.7586
GCCCCUCCUGCUGGGCUGGGG	chr6:151187459-151187742(+)$1	283	254	275	11.8193
UCCGGCCAGCUCCGCUCCCGG	chr22:41488086-41488355(+)$1	269	243	264	9.2710
CAGGGCUAUACCCUUGGGCUG	chr9:140347363-140347614(-)$1	251	229	250	9.6419
CGAggggcggcucuuggggcg	chr8:22224983-22225300(+)$1	317	281	302	10.3102
GGUGCCCUACCCCUGCCCUGC	chr17:79876243-79876491(-)$1	248	183	204	10.6430
GAGUGGGGAGCCCGGGACUCG	chr19:42758624-42758904(-)$1	280	256	277	7.9562
CUCCGCUCCAUCCGGCCGCUC	chr17:41622773-41623039(+)$1	266	201	222	9.5833
GCGCUUGCGCGCACUUCCUGC	chr7:5569508-5569758(-)$1	250	135	156	10.3399
GCGGCCUGAGCGGGAUGGGCG	chr2:242254385-242254690(-)$1	305	249	270	11.3849
cggcACCAGCACCACCAUGUC	chr2:183902783-183903052(-)$1	269	209	230	8.4961
ggcagggccgggGCGUGGGCC	chr20:57267737-57268015(+)$1	278	189	210	9.0932
CUGAGGCAGGUGGCGAGCAGC	chr16:4660776-4661049(-)$1	273	239	260	8.8090
CCGACGUUGUUAGGUAGGACC	chr14:32546358-32546650(+)$1	292	270	291	14.1934
CCCCGAGCCCCGCAAGGGUCC	chr22:39916786-39917047(+)$1	261	199	220	9.5790
UGGGGCGGGGGCUGCGCCCGA	chr19:34287643-34287903(+)$1	260	207	228	11.4595
GCCCCGCACCCGGGAAGCCCA	chr2:242751891-242752159(+)$1	268	228	249	11.0157
CCCCGGCUGGGGUUGAGGGUG	chr10:102759112-102759369(+)$1	257	184	205	10.6303
GGUGCAGCGGGCGCGCGCGGA	chr17:79860000-79860248(-)$1	248	222	243	10.1505
CAGCACCACGGCGGUGGCGGU	chr17:36955635-36955924(-)$1	289	264	285	11.0615
GAUCUCACUGGAGGAGUCACU	chr17:80193051-80193295(+)$1	244	63	84	10.1884
CCUACCCUCCCCGCAGCUGUU	chr11:703346-703625(-)$1	279	252	273	10.7405
UCCUGCGGUGCCUUCCUCGAG	chr14:105260478-105260741(-)$1	263	215	236	11.0120
AGCUGAUGUGGCCGCCGCGGC	chr3:49044987-49045247(+)$1	260	173	194	11.0391
ggggugggggcggaagggcgg	chr2:183902926-183903187(-)$1	261	100	121	10.4556
GCCUGGCUCCAGCACAGAGAA	chr19:1882350-1882593(-)$1	243	146	167	9.6462
GAAUGGUGCCUCUGUGAGCGG	chr19:1474095-1474313(-)$1	218	152	173	11.8714
CGCGAGUUCGAGCCCAGAGCC	chr11:842825-843110(+)$1	285	184	205	11.8423

#DB
))..))).)))))).)).)))	chr8:103424361-103424610(-)$1	1	166	187	11.9083
)))))....)))).)...)))	chr16:725992-726263(+)$1	1	232	253	11.9176
)))).)).))))))...))))	chr19:575262-575509(+)$1	1	224	245	11.0151
))).))).))))))...)).)	chr12:123755359-123755634(-)$1	1	200	221	10.7422
)).)))))))))).))...))	chr19:2270197-2270429(+)$1	1	165	186	9.5924
))..))))).)))).))))))	chr16:4664021-4664282(-)$1	1	208	229	10.4183
))..)).)).))))).).)))	chr17:7211174-7211424(+)$1	1	227	248	12.3671
).))))).))))))..))(((	chr2:242673993-242674363(+)$1	1	308	329	10.0200
))...)).)))).))).))))	chr7:127671509-127671761(+)$1	1	229	250	10.6043
.))))).).)))).)...)))	chr8:145687972-145688295(-)$1	1	293	314	11.6762
)))))))))))).)))).)))	chr17:79860483-79860800(-)$1	1	238	259	9.7353
)))...).)))).))).))))	chr17:7477337-7477582(+)$1	1	136	157	9.0066
)))))...))))).))))).)	chr17:74381036-74381273(+)$1	1	189	210	11.1531
)).....)))))..).))...	chr17:80190134-80190409(+)$1	1	253	274	9.2841
))..))).))))))....)))	chr17:80192190-80192484(+)$1	1	243	264	13.0616
).))))))))))..))..)))	chr17:79674334-79674589(+)$1	1	220	241	12.1930
))....)))))))))...)))	chr16:4661260-4661484(-)$1	1	141	162	9.1872
)))))...))).))....)))	chr3:195635834-195636067(-)$1	1	149	170	11.1786
)...)).)))))))))..)))	chr17:63556547-63556789(-)$1	1	170	191	8.4343
...))))..))))))....))	chr20:62330408-62330642(-)$1	1	208	229	8.7120
))..)).)))))).)).))))	chr16:2579832-2580060(+)$1	1	187	208	10.6873
))..))...)))))).))).)	chr5:176873734-176873981(-)$1	1	108	129	10.7217
.)).....))))))).)))))	chr2:85766911-85767161(+)$1	1	224	245	9.7231
)...)))..)))).)).))))	chr16:4400900-4401300(-)$1	1	95	116	11.6137
)))))))))).))))).))))	chr16:75284644-75284909(-)$1	1	138	159	10.0299
).))....))))).)))))))	chr3:49755246-49755516(+)$1	1	236	257	10.4638
)).))...))))).))..)).	chr2:242447571-242447832(-)$1	1	159	180	12.8508
))).))).)))).)))))).)	chr8:144679309-144679553(-)$1	1	206	227	9.7586
))))))..)))))..)).)))	chr6:151187459-151187742(+)$1	1	254	275	11.8193
))))))).)))..)))..)))	chr22:41488086-41488355(+)$1	1	243	264	9.2710
..))))).))))..))).)).	chr9:140347363-140347614(-)$1	1	229	250	9.6419
))..)))).))))))...)))	chr8:22224983-22225300(+)$1	1	281	302	10.3102
))))))..))))).))))).)	chr17:79876243-79876491(-)$1	1	183	204	10.6430
))).)))))))))))..))))	chr19:42758624-42758904(-)$1	1	256	277	7.9562
))..))))))))))))).)))	chr17:41622773-41623039(+)$1	1	201	222	9.5833
)).)).).))))))......)	chr7:5569508-5569758(-)$1	1	135	156	10.3399
.)).)))..)))))......)	chr2:242254385-242254690(-)$1	1	249	270	11.3849
)))).)).)).)).)))).))	chr2:183902783-183903052(-)$1	1	209	230	8.4961
))).)))..)))).)))))).	chr20:57267737-57268015(+)$1	1	189	210	9.0932
))..))).)))))))))..))	chr16:4660776-4661049(-)$1	1	239	260	8.8090
))..))).))))).)...)))	chr14:32546358-32546650(+)$1	1	270	291	14.1934
..))))).)))))...)))))	chr22:39916786-39917047(+)$1	1	199	220	9.5790
))).))))))))).).)))..	chr19:34287643-34287903(+)$1	1	207	228	11.4595
)))))...))))).).)))).	chr2:242751891-242752159(+)$1	1	228	249	11.0157
)).)))).).))).).)).))	chr10:102759112-102759369(+)$1	1	184	205	10.6303
)))))))).))))...)))).	chr17:79860000-79860248(-)$1	1	222	243	10.1505
).)).))..)))))).)))))	chr17:36955635-36955924(-)$1	1	264	285	11.0615
))..)))..)))))((((.((	chr17:80193051-80193295(+)$1	1	63	84	10.1884
))......))))))...))))	chr11:703346-703625(-)$1	1	252	273	10.7405
.)))))..)))...)...)))	chr14:105260478-105260741(-)$1	1	215	236	11.0120
..))))).)))))))))).))	chr3:49044987-49045247(+)$1	1	173	194	11.0391
).))))).)))))...)))))	chr2:183902926-183903187(-)$1	1	100	121	10.4556
)))..)).))..))))).))(	chr19:1882350-1882593(-)$1	1	146	167	9.6462
.)))).).))))).).)).))	chr19:1474095-1474313(-)$1	1	152	173	11.8714
)).)))..))))))....)))	chr11:842825-843110(+)$1	1	184	205	11.8423

#PSSM
F : 0.23	C : 0.12	E : 0.09	G : 0.07	} : 0.07	B : 0.07	H : 0.05	D : 0.05	: : 0.05	d : 0.03	Z : 0.03	A : 0.01	e : 0.01	f : 0.01	h : 0.01	J : 0.01	
F : 0.20	C : 0.16	E : 0.10	B : 0.10	: : 0.09	D : 0.07	H : 0.05	G : 0.05	} : 0.05	Z : 0.05	d : 0.01	J : 0.01	
E : 0.21	Y : 0.20	C : 0.10	} : 0.09	F : 0.09	B : 0.09	D : 0.05	Z : 0.05	? : 0.01	~ : 0.01	: : 0.01	J : 0.01	_ : 0.01	
E : 0.23	Y : 0.21	} : 0.10	C : 0.07	D : 0.07	Z : 0.07	F : 0.07	B : 0.07	? : 0.03	~ : 0.01	_ : 0.01	
C : 0.27	E : 0.23	B : 0.12	D : 0.09	F : 0.07	} : 0.05	Z : 0.03	? : 0.03	~ : 0.03	_ : 0.01	Y : 0.01	
C : 0.27	E : 0.21	B : 0.18	Z : 0.09	D : 0.07	~ : 0.05	? : 0.03	} : 0.03	F : 0.01	_ : 0.01	
C : 0.25	E : 0.18	B : 0.09	Z : 0.09	} : 0.07	D : 0.07	Y : 0.07	A : 0.05	~ : 0.03	? : 0.03	I : 0.01	_ : 0.01	
} : 0.36	Y : 0.18	E : 0.10	Z : 0.09	~ : 0.03	B : 0.03	I : 0.03	D : 0.03	A : 0.01	? : 0.01	H : 0.01	F : 0.01	C : 0.01	_ : 0.01	
E : 0.30	F : 0.14	Y : 0.10	C : 0.09	D : 0.09	B : 0.07	} : 0.05	I : 0.05	~ : 0.01	Z : 0.01	H : 0.01	A : 0.01	
E : 0.32	F : 0.21	D : 0.20	C : 0.09	} : 0.05	I : 0.05	B : 0.03	H : 0.01	
E : 0.32	F : 0.21	D : 0.21	C : 0.10	I : 0.05	} : 0.03	H : 0.01	Y : 0.01	
E : 0.34	F : 0.21	D : 0.21	I : 0.05	C : 0.03	B : 0.03	Y : 0.03	} : 0.01	H : 0.01	Z : 0.01	
E : 0.32	F : 0.21	D : 0.12	} : 0.07	Y : 0.07	B : 0.05	I : 0.05	C : 0.03	H : 0.01	Z : 0.01	
} : 0.29	F : 0.21	E : 0.10	C : 0.09	Y : 0.07	Z : 0.07	I : 0.05	D : 0.03	A : 0.01	B : 0.01	H : 0.01	
A : 0.18	C : 0.12	Z : 0.10	B : 0.10	F : 0.10	E : 0.09	~ : 0.05	I : 0.05	} : 0.03	Y : 0.03	D : 0.03	_ : 0.03	H : 0.01	
Z : 0.21	} : 0.16	B : 0.14	C : 0.12	~ : 0.07	E : 0.07	Y : 0.03	D : 0.03	I : 0.03	F : 0.03	_ : 0.03	A : 0.01	
Z : 0.18	B : 0.16	} : 0.09	Y : 0.09	E : 0.09	D : 0.07	C : 0.07	~ : 0.07	F : 0.05	A : 0.03	_ : 0.03	I : 0.01	J : 0.01	
B : 0.20	} : 0.12	Z : 0.12	D : 0.12	E : 0.09	Y : 0.09	~ : 0.07	F : 0.05	_ : 0.03	A : 0.01	I : 0.01	C : 0.01	J : 0.01	
D : 0.21	E : 0.18	B : 0.12	F : 0.12	} : 0.07	C : 0.05	J : 0.03	I : 0.03	_ : 0.03	Z : 0.01	c : 0.01	: : 0.01	~ : 0.01	Y : 0.01	{ : 0.01	
D : 0.23	E : 0.18	F : 0.10	B : 0.10	} : 0.09	C : 0.05	J : 0.03	G : 0.03	I : 0.03	_ : 0.03	H : 0.01	c : 0.01	: : 0.01	Y : 0.01	
D : 0.25	E : 0.18	F : 0.09	B : 0.09	C : 0.07	: : 0.05	} : 0.05	J : 0.03	G : 0.03	I : 0.03	H : 0.01	c : 0.01	A : 0.01	Y : 0.01	e : 0.01	

#score	580.2925788646859
#seq	55
#width	21
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF445CGF_QKI_transcript_m3_run1.txt

#BEAR
!!bb[bbpppppppbb]bb]dd	chr16:53208368-53208619(+)$1	251	208	230	12.1939
"a[ddddpppppppdddd]a44	chr5:36937763-36938033(+)$1	270	26	48	13.7163
h"""cccpppppppccc4444h	chr13:113499359-113499604(+)$1	245	34	56	13.7812
ggggcccpppppppccc22ggg	chr4:52762646-52762983(+)$1	337	16	38	14.2297
h[eeeeerrrrrrrrreeeee]	chr16:50195419-50195674(+)$1	255	29	51	11.1542
eee[bbrrrrrrrrrbb]eeee	chr12:3262685-3262946(+)$1	261	229	251	9.9812
!ffffffpppppppffffffff	chr12:81611874-81612096(+)$1	222	195	217	13.3661
ddd[cccpppppppccc]dddd	chr7:32546935-32547198(+)$1	263	209	231	13.3602
##cccrrrrrrrrrccc22hhh	chr11:65273207-65273415(+)$1	208	100	122	10.8292
d!!ddddpppppppdddd22dd	chr7:65375127-65375389(+)$1	262	72	94	13.4361
""eeeeepppppppeeeee333	chr6:3088850-3089147(+)$1	297	187	209	14.3846
gggggggpppppppggggggg5	chr10:114811473-114811756(+)$1	283	38	60	13.1980
#ddddrrrrrrrrrdddd333e	chr12:81634061-81634307(+)$1	246	12	34	10.9417
!bb[cccpppppppccc]bb33	chr3:58117759-58118005(+)$1	246	149	171	13.5948
[ccc[bbpppppppbbccc]dd	chr2:27586092-27586389(+)$1	297	255	277	13.1205
ffffffrrrrrrrrrffffffH	chr9:126293160-126293426(-)$1	266	1	23	9.9767
ccc!!bbpppppppbb22ccce	chr6:3431316-3431593(-)$1	277	198	220	12.5169
ceeeeerrrrrrrrreeeee]c	chr6:158441568-158441798(+)$1	230	171	193	11.1330
iiiiiiipppppppiiiiiiii	chrX:46185457-46185778(-)$1	321	260	282	13.9461
dddd[bbpppppppbb]dddd]	chr16:53188064-53188317(+)$1	253	114	136	12.3110
b"""cccpppppppccc]bb22	chr12:32520433-32520718(+)$1	285	199	221	13.3450
hhhh!!arrrrrrrrra22hhh	chrX:68943243-68943625(+)$1	382	137	159	9.9303
iiiiiiipppppppiiiiiiii	chr2:36787699-36787952(-)$1	253	62	84	13.9461
[ffffffrrrrrrrrrffffff	chr10:121014947-121015239(+)$1	292	114	136	10.8253
effffffpppppppffffff22	chr10:124188840-124189089(+)$1	249	23	45	13.2002
ff!!cccpppppppccc22fff	chr4:5775970-5776299(+)$1	329	234	256	13.6906
ceeeeerrrrrrrrreeeee]c	chr2:61413190-61413453(+)$1	263	120	142	11.1330
gggggggrrrrrrrrrgggggg	chr16:47625478-47625806(+)$1	328	33	55	11.5266
ccddddrrrrrrrrrdddd]cc	chr14:31042405-31042641(+)$1	236	107	129	10.9260
##cccrrrrrrrrrccc22eee	chr14:32548128-32548380(+)$1	252	104	126	11.0580
###ddddpppppppdddd333=	chr2:102456984-102457259(+)$1	275	227	249	14.1053
bbbddddpppppppdddd22bb	chr15:64415858-64416129(+)$1	271	81	103	12.1056
ffffffrrrrrrrrrffffff:	chr14:31042441-31042690(+)$1	249	22	44	9.7984
gggggggpppppppggggggg>	chr4:151900370-151900680(-)$1	310	112	134	13.7932
f[eeeeepppppppeeeee]ff	chr16:53089898-53090157(+)$1	259	71	93	13.6455
!!eeeeepppppppeeeee22c	chr1:89290594-89290842(+)$1	248	182	204	14.0649
::eeeeepppppppeeeeeddd	chr5:80414303-80414566(+)$1	263	67	89	11.3769
a!!ddddpppppppdddd22a2	chr5:96062493-96062767(+)$1	274	139	161	13.6706
!ffffffpppppppffffff22	chr7:92408919-92409226(-)$1	307	128	150	13.5516
gggggggrrrrrrrrrgggggg	chr10:97393018-97393331(-)$1	313	67	89	11.5266
c[eeeeepppppppeeeee]cc	chr20:33336774-33337056(-)$1	282	218	240	13.9529
=======ppppppp========	chr1:43416675-43416942(-)$1	267	126	148	14.3668
""eeeeepppppppeeeee22c	chr3:71307295-71307582(-)$1	287	57	79	13.9481
[ffffffpppppppffffffdd	chrX:30718118-30718356(+)$1	238	14	36	13.3769
hhh[cccpppppppccc]hhhh	chr4:152184319-152184599(-)$1	280	143	165	13.1093
f!!ddddrrrrrrrrrdddd22	chr19:17294435-17294731(+)$1	296	52	74	10.9014
dddd[bbpppppppbb]dddd:	chr20:8377690-8377936(+)$1	246	221	243	11.3656
bccccccpppppppccc]ccc]	chr22:50627008-50627284(+)$1	276	163	185	13.8228
gggggggpppppppgggggggd	chr3:24458872-24459186(-)$1	314	0	22	13.8526
d!!ddddpppppppdddd]ddd	chr10:104886840-104887202(-)$1	362	285	307	13.3813
gggggggpppppppgggggggF	chr3:133879714-133880052(-)$1	338	62	84	13.4680
[ffffffrrrrrrrrrffffff	chr10:14616475-14616812(-)$1	337	63	85	10.8253
dd:ddddpppppppdddddddd	chr3:172083800-172084067(+)$1	267	149	171	11.7001

#otherMatches

#Seq PSSM
guggcgcgaucauggcucugug	chr16:53208368-53208619(+)$1	251	208	230	12.1939
ucugcaucuuggaaaugcugua	chr5:36937763-36938033(+)$1	270	26	48	13.7163
UACAGACCAGUCCAGUUGCCAG	chr13:113499359-113499604(+)$1	245	34	56	13.7812
AACAGGGACCUCGACCUUAUGU	chr4:52762646-52762983(+)$1	337	16	38	14.2297
AAGUUUCAAUAAAAUGGAAGCC	chr16:50195419-50195674(+)$1	255	29	51	11.1542
uuuCGCUUUCCUACUGUUGAAU	chr12:3262685-3262946(+)$1	261	229	251	9.9812
aaggucacacaauuuggcuuag	chr12:81611874-81612096(+)$1	222	195	217	13.3661
uucagcauuaugcuuguggaau	chr7:32546935-32547198(+)$1	263	209	231	13.3602
GAACUGUAAUGCUGGGUGGGAA	chr11:65273207-65273415(+)$1	208	100	122	10.8292
uuuaauaugaacauuauuuuaa	chr7:65375127-65375389(+)$1	262	72	94	13.4361
guagacuggcuaaagguuuucu	chr6:3088850-3089147(+)$1	297	187	209	14.3846
UGUGAAAUUCUUAUUUUCAUAU	chr10:114811473-114811756(+)$1	283	38	60	13.1980
uguaaugcuccucuuuauucuu	chr12:81634061-81634307(+)$1	246	12	34	10.9417
AGCUGGGAUCUGGACUCUGCAA	chr3:58117759-58118005(+)$1	246	149	171	13.5948
auggugccaucucagcucacug	chr2:27586092-27586389(+)$1	297	255	277	13.1205
UUUUGGAAGUCUAACCCAGAAU	chr9:126293160-126293426(-)$1	266	1	23	9.9767
CUCCUGGAAGCCUCCCUUGAGC	chr6:3431316-3431593(-)$1	277	198	220	12.5169
GUGACUCCAACUUUCAGUUGCC	chr6:158441568-158441798(+)$1	230	171	193	11.1330
UAAGUCUCGUUCCCAGAUUUAA	chrX:46185457-46185778(-)$1	321	260	282	13.9461
GACAUUCUAAAGCUGACUGUUC	chr16:53188064-53188317(+)$1	253	114	136	12.3110
CCACAGUGCUCACAACUAGCCG	chr12:32520433-32520718(+)$1	285	199	221	13.3450
UUGUACCUAAAAUGAUGCAGCA	chrX:68943243-68943625(+)$1	382	137	159	9.9303
UUCAUUUUCUGUGUAAGUGAAG	chr2:36787699-36787952(-)$1	253	62	84	13.9461
CUGGCUCAUUAUCACAGAGUCA	chr10:121014947-121015239(+)$1	292	114	136	10.8253
UAGGCUGCCAAAUUCAGCUUUG	chr10:124188840-124189089(+)$1	249	23	45	13.2002
agcagguauuaucagcccccuu	chr4:5775970-5776299(+)$1	329	234	256	13.6906
GUGUUGCCUCAACCUUAACAGC	chr2:61413190-61413453(+)$1	263	120	142	11.1330
cuagggcccauccacagcccua	chr16:47625478-47625806(+)$1	328	33	55	11.5266
GUCUCCAAAUUUGUAGGAGCAC	chr14:31042405-31042641(+)$1	236	107	129	10.9260
UAUCUGUAGUACAAAGAGCGGU	chr14:32548128-32548380(+)$1	252	104	126	11.0580
AAAUUUCAAGGUCAGAGAAGAA	chr2:102456984-102457259(+)$1	275	227	249	14.1053
CCAGAAAGCUAACAUUUCAGUG	chr15:64415858-64416129(+)$1	271	81	103	12.1056
GUUGCUGUGAACCAAAGUAACU	chr14:31042441-31042690(+)$1	249	22	44	9.7984
guuucuuuuugauugaggaacu	chr4:151900370-151900680(-)$1	310	112	134	13.7932
UGuuuguuuguuuuauagagau	chr16:53089898-53090157(+)$1	259	71	93	13.6455
augguacaucuuaaguauucag	chr1:89290594-89290842(+)$1	248	182	204	14.0649
ccuggcucucuuuuagccauac	chr5:80414303-80414566(+)$1	263	67	89	11.3769
AUAACUGCAAUUCACAGUCUUC	chr5:96062493-96062767(+)$1	274	139	161	13.6706
UUUAGUACAAUGUUUACUAACC	chr7:92408919-92409226(-)$1	307	128	150	13.5516
ACCUGCAGGGGGUAAAUGUGGG	chr10:97393018-97393331(-)$1	313	67	89	11.5266
aaggauccaaacaagauucaua	chr20:33336774-33337056(-)$1	282	218	240	13.9529
aaguuccauaggcagggauuug	chr1:43416675-43416942(-)$1	267	126	148	14.3668
GUUACUGCUUCCUUCAGUGUUG	chr3:71307295-71307582(-)$1	287	57	79	13.9481
AGUCAUUUCUUAAUAAUGGCAA	chrX:30718118-30718356(+)$1	238	14	36	13.3769
caucuucaccuauagaaugugu	chr4:152184319-152184599(-)$1	280	143	165	13.1093
GGCGGUGGCCUUGUUGCACUUG	chr19:17294435-17294731(+)$1	296	52	74	10.9014
cuuauuguaugcuucacuaaga	chr20:8377690-8377936(+)$1	246	221	243	11.3656
GCAGGCAGGUGGGAUGCGCUGU	chr22:50627008-50627284(+)$1	276	163	185	13.8228
AUAGCUAAUCAAUAUAGUUAUU	chr3:24458872-24459186(-)$1	314	0	22	13.8526
ACAUUAAUUAUGCUUUAACUAc	chr10:104886840-104887202(-)$1	362	285	307	13.3813
gcuguuuuugcuuuaaauaguc	chr3:133879714-133880052(-)$1	338	62	84	13.4680
UGUUAUUAAAAAAUCAAGUAAU	chr10:14616475-14616812(-)$1	337	63	85	10.8253
UUCUGCAACUAUGAUGCACUGA	chr3:172083800-172084067(+)$1	267	149	171	11.7001

#DB
..((.((.......)).)).))	chr16:53208368-53208619(+)$1	1	208	230	12.1939
.(.((((.......)))).)..	chr5:36937763-36938033(+)$1	1	26	48	13.7163
(...(((.......)))....)	chr13:113499359-113499604(+)$1	1	34	56	13.7812
(((((((.......)))..)))	chr4:52762646-52762983(+)$1	1	16	38	14.2297
(.(((((.........))))).	chr16:50195419-50195674(+)$1	1	29	51	11.1542
(((.((.........)).))))	chr12:3262685-3262946(+)$1	1	229	251	9.9812
.((((((.......))))))))	chr12:81611874-81612096(+)$1	1	195	217	13.3661
(((.(((.......))).))))	chr7:32546935-32547198(+)$1	1	209	231	13.3602
..(((.........)))..)))	chr11:65273207-65273415(+)$1	1	100	122	10.8292
(..((((.......))))..))	chr7:65375127-65375389(+)$1	1	72	94	13.4361
..(((((.......)))))...	chr6:3088850-3089147(+)$1	1	187	209	14.3846
(((((((.......))))))).	chr10:114811473-114811756(+)$1	1	38	60	13.1980
.((((.........))))...)	chr12:81634061-81634307(+)$1	1	12	34	10.9417
.((.(((.......))).))..	chr3:58117759-58118005(+)$1	1	149	171	13.5948
.(((.((.......))))).))	chr2:27586092-27586389(+)$1	1	255	277	13.1205
((((((.........))))))(	chr9:126293160-126293426(-)$1	1	1	23	9.9767
(((..((.......))..))))	chr6:3431316-3431593(-)$1	1	198	220	12.5169
((((((.........))))).)	chr6:158441568-158441798(+)$1	1	171	193	11.1330
(((((((.......))))))))	chrX:46185457-46185778(-)$1	1	260	282	13.9461
((((.((.......)).)))).	chr16:53188064-53188317(+)$1	1	114	136	12.3110
(...(((.......))).))..	chr12:32520433-32520718(+)$1	1	199	221	13.3450
((((..(.........)..)))	chrX:68943243-68943625(+)$1	1	137	159	9.9303
(((((((.......))))))))	chr2:36787699-36787952(-)$1	1	62	84	13.9461
.((((((.........))))))	chr10:121014947-121015239(+)$1	1	114	136	10.8253
(((((((.......))))))..	chr10:124188840-124189089(+)$1	1	23	45	13.2002
((..(((.......)))..)))	chr4:5775970-5776299(+)$1	1	234	256	13.6906
((((((.........))))).)	chr2:61413190-61413453(+)$1	1	120	142	11.1330
(((((((.........))))))	chr16:47625478-47625806(+)$1	1	33	55	11.5266
((((((.........)))).))	chr14:31042405-31042641(+)$1	1	107	129	10.9260
..(((.........)))..)))	chr14:32548128-32548380(+)$1	1	104	126	11.0580
...((((.......))))...)	chr2:102456984-102457259(+)$1	1	227	249	14.1053
(((((((.......))))..))	chr15:64415858-64416129(+)$1	1	81	103	12.1056
((((((.........)))))).	chr14:31042441-31042690(+)$1	1	22	44	9.7984
(((((((.......))))))).	chr4:151900370-151900680(-)$1	1	112	134	13.7932
(.(((((.......))))).))	chr16:53089898-53090157(+)$1	1	71	93	13.6455
..(((((.......)))))..)	chr1:89290594-89290842(+)$1	1	182	204	14.0649
..(((((.......)))))(((	chr5:80414303-80414566(+)$1	1	67	89	11.3769
(..((((.......))))..).	chr5:96062493-96062767(+)$1	1	139	161	13.6706
.((((((.......))))))..	chr7:92408919-92409226(-)$1	1	128	150	13.5516
(((((((.........))))))	chr10:97393018-97393331(-)$1	1	67	89	11.5266
(.(((((.......))))).))	chr20:33336774-33337056(-)$1	1	218	240	13.9529
(((((((.......))))))))	chr1:43416675-43416942(-)$1	1	126	148	14.3668
..(((((.......)))))..)	chr3:71307295-71307582(-)$1	1	57	79	13.9481
.((((((.......))))))))	chrX:30718118-30718356(+)$1	1	14	36	13.3769
(((.(((.......))).))))	chr4:152184319-152184599(-)$1	1	143	165	13.1093
(..((((.........))))..	chr19:17294435-17294731(+)$1	1	52	74	10.9014
((((.((.......)).)))).	chr20:8377690-8377936(+)$1	1	221	243	11.3656
(((((((.......))).))).	chr22:50627008-50627284(+)$1	1	163	185	13.8228
(((((((.......)))))))(	chr3:24458872-24459186(-)$1	1	0	22	13.8526
(..((((.......)))).)))	chr10:104886840-104887202(-)$1	1	285	307	13.3813
(((((((.......)))))))(	chr3:133879714-133880052(-)$1	1	62	84	13.4680
.((((((.........))))))	chr10:14616475-14616812(-)$1	1	63	85	10.8253
)).((((.......))))((((	chr3:172083800-172084067(+)$1	1	149	171	11.7001

#PSSM
g : 0.13	d : 0.11	! : 0.09	f : 0.09	c : 0.09	h : 0.07	# : 0.07	[ : 0.07	" : 0.05	b : 0.05	e : 0.03	i : 0.03	: : 0.01	a : 0.01	= : 0.01	
f : 0.16	g : 0.13	! : 0.11	d : 0.09	" : 0.07	c : 0.07	[ : 0.05	e : 0.05	# : 0.05	b : 0.03	i : 0.03	h : 0.03	a : 0.01	: : 0.01	= : 0.01	
e : 0.18	f : 0.15	g : 0.13	d : 0.09	c : 0.09	! : 0.09	b : 0.05	" : 0.03	i : 0.03	h : 0.03	[ : 0.01	# : 0.01	= : 0.01	: : 0.01	
d : 0.22	e : 0.16	f : 0.15	g : 0.13	[ : 0.07	c : 0.07	" : 0.03	! : 0.03	i : 0.03	b : 0.01	h : 0.01	= : 0.01	
d : 0.18	c : 0.18	e : 0.16	f : 0.15	g : 0.11	[ : 0.07	! : 0.03	i : 0.03	b : 0.01	= : 0.01	
d : 0.16	e : 0.16	c : 0.15	f : 0.15	b : 0.11	g : 0.11	r : 0.05	i : 0.03	! : 0.01	= : 0.01	
r : 0.16	d : 0.15	c : 0.15	e : 0.13	f : 0.11	g : 0.11	b : 0.09	i : 0.03	a : 0.01	= : 0.01	
p : 0.69	r : 0.30	
p : 0.69	r : 0.30	
p : 0.69	r : 0.30	
p : 0.69	r : 0.30	
p : 0.69	r : 0.30	
p : 0.69	r : 0.30	
p : 0.69	r : 0.30	
r : 0.24	c : 0.18	d : 0.15	e : 0.11	b : 0.09	f : 0.07	g : 0.07	i : 0.03	= : 0.01	
c : 0.18	d : 0.16	e : 0.15	r : 0.13	b : 0.11	f : 0.11	g : 0.07	i : 0.03	= : 0.01	
c : 0.20	d : 0.18	e : 0.16	f : 0.15	g : 0.11	] : 0.05	i : 0.03	b : 0.01	2 : 0.01	a : 0.01	= : 0.01	
d : 0.22	e : 0.16	f : 0.15	2 : 0.11	] : 0.11	g : 0.11	i : 0.03	b : 0.01	4 : 0.01	c : 0.01	= : 0.01	
e : 0.18	2 : 0.15	f : 0.15	d : 0.11	g : 0.11	b : 0.05	c : 0.05	] : 0.03	3 : 0.03	i : 0.03	4 : 0.01	= : 0.01	h : 0.01	
f : 0.16	g : 0.13	d : 0.13	] : 0.09	e : 0.09	2 : 0.09	h : 0.05	3 : 0.05	b : 0.03	c : 0.03	i : 0.03	a : 0.01	4 : 0.01	= : 0.01	
d : 0.18	g : 0.13	f : 0.13	2 : 0.11	3 : 0.07	c : 0.07	e : 0.05	h : 0.05	4 : 0.03	] : 0.03	i : 0.03	b : 0.01	a : 0.01	= : 0.01	
d : 0.16	c : 0.11	f : 0.09	2 : 0.09	h : 0.07	e : 0.07	g : 0.05	] : 0.05	3 : 0.03	i : 0.03	= : 0.03	: : 0.03	4 : 0.01	5 : 0.01	H : 0.01	b : 0.01	> : 0.01	F : 0.01	

#score	666.4650033490399
#seq	53
#width	22
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF598NYT_FUBP3_UTR_m2_run2.txt

#BEAR
========="""cccmmmmccc======	chr16:70284048-70284318(-)$1	270	127	155	14.7622
hhhhdddd"""cccooooooccc22ddd	chr10:32094350-32094704(-)$1	354	266	294	12.0256
$$$$eeeee"""bboooooobb]eeeee	chr1:94639118-94639371(-)$1	253	76	104	11.6920
C============lll============	chr20:31025023-31025331(+)$1	308	278	306	13.7239
========[bb[bboooooobb]bb]==	chr11:33376650-33376921(+)$1	271	56	84	15.2733
=========####bbnnnnnbb4444==	chr2:161130039-161130307(-)$1	268	83	111	13.6141
=========[ddddoooooodddd]===	chr6:126298796-126299164(+)$1	368	242	270	15.7688
!dddd[ccc[a[bboooooobb]a]ccc	chr5:137088381-137088630(-)$1	249	59	87	13.0654
h!!dddd[a!!cccooooooccc4444a	chr5:65376058-65376371(+)$1	313	264	292	13.7411
==========[a[bbmmmmbba]=====	chr1:16450955-16451221(-)$1	266	85	113	13.6373
D=============mmmm==========	chr6:132269652-132269884(-)$1	232	85	113	14.2758
"ggggggg!!ccc[aooooooa]ccc22	chr11:27387852-27388097(-)$1	245	121	149	12.8694
%===========nnnnn===========	chr5:142659619-142659884(-)$1	265	79	107	13.2455
&===========[ccclllccc]=====	chr1:214212397-214212652(+)$1	255	188	216	14.0696
=========!!cccooooooccc22===	chr16:85706912-85707190(+)$1	278	196	224	17.2861
[==========rrrrrrrrr========	chr6:117882778-117883080(-)$1	302	51	79	14.0307
d[bb[ccc[eeeeeooooooeeeee]cc	chr12:63038093-63038331(-)$1	238	36	64	11.1174
=========="""bbnnnnnbb4444==	chr13:39623943-39624262(+)$1	319	101	129	13.8505
========="""cccmmmmccc22====	chr2:177202259-177202655(+)$1	396	264	292	14.2745
$$============mmmm==========	chr11:12965784-12966058(+)$1	274	223	251	14.8909
========"""cccooooooccc]====	chr2:62451490-62451738(+)$1	248	93	121	17.7046
===[ccc"""ddddoooooodddd333c	chr8:26268626-26268883(+)$1	257	110	138	13.7446
===========[bboooooobb]=====	chr20:4832957-4833206(-)$1	249	81	109	17.7822
:===========nnnnn===========	chr3:123210403-123210654(-)$1	251	76	104	12.8133
=========="""ccclllccc333===	chr2:39477290-39477558(-)$1	268	141	169	14.7547
ddddbb[gggggggooooooggggggg]	chr2:178095158-178095420(-)$1	262	42	70	12.5194
====="""bb[cccooooooccc]bb33	chr10:105360597-105360854(-)$1	257	140	168	14.4749
:===========oooooo==========	chr7:94298344-94298581(+)$1	237	161	189	15.8057
"hhhhhhhh!!cccooooooccc22hhh	chr3:195776085-195776391(-)$1	306	52	80	11.7914
"ffffff[bb!!bboooooobb333bb]	chr2:131904552-131904833(+)$1	281	174	202	12.4949
=====dddd[ddddoooooodddd]ddd	chr13:41702490-41702763(-)$1	273	150	178	12.1108
:=============mmmm==========	chr4:39500876-39501172(-)$1	296	264	292	14.4704
ffffbb[gggggggoooooogggggggb	chr6:64292165-64292408(+)$1	243	179	207	12.1766
ccc[dddd"""cccooooooccc4444d	chr3:113530355-113530638(+)$1	283	172	200	13.8236
hhhh==========oooooo========	chr15:29992733-29993028(-)$1	295	203	231	16.8879
gggg==========mmmm==========	chr7:100781317-100781604(+)$1	287	93	121	14.7106
eee####bb"""bboooooobb4444bb	chr8:121549100-121549339(-)$1	239	25	53	13.0640
h[iiiiiiiii[cccmmmmccc]iiiii	chr20:52183584-52183849(-)$1	265	56	84	12.8876
ii============lll===========	chr20:43955074-43955329(-)$1	255	45	73	15.7928
::==========oooooo==========	chr17:63006755-63007034(-)$1	279	220	248	14.4125
:=============oooooo========	chr7:45932740-45932957(+)$1	217	23	51	17.6190
gggggbb!!eeeeeooooooeeeee22b	chr5:74657126-74657364(+)$1	238	130	158	11.0232
dddd:iiiiiiiiiooooooiiiiiiii	chr4:99992172-99992485(-)$1	313	194	222	13.9617
[a[===========oooooo========	chr21:44836043-44836308(-)$1	265	34	62	18.1880
[bb####gggggggooooooggggggg6	chr19:52516538-52516826(-)$1	288	70	98	12.6403
dddd!!ccc[ddddoooooodddd]ccc	chr13:96446719-96447102(+)$1	383	85	113	11.5536
hhhh==========oooooo========	chr13:98675040-98675308(+)$1	268	88	116	16.8879
!!iiiiiiiii[bboooooobb]iiiii	chr11:125827256-125827555(-)$1	299	58	86	16.5095
$$dddd####ddddoooooodddd4444	chr7:105731918-105732158(-)$1	240	76	104	11.9334
==========!!cccmmmmccc22====	chr10:70550976-70551324(+)$1	348	289	317	14.1373
bb[===========oooooo========	chr8:128753397-128753663(+)$1	266	141	169	17.6711

#otherMatches

#Seq PSSM
ggcccuggauaaugcuguagcauucagg	chr16:70284048-70284318(-)$1	270	127	155	14.7622
UUUCCUGUCUUGACAGCUUGGUUUUAUA	chr10:32094350-32094704(-)$1	354	266	294	12.0256
UGUUGUAUUUAUCCUCUGUUGGUAAUAC	chr1:94639118-94639371(-)$1	253	76	104	11.6920
CGACCCUUCUGGUCUUGCUGGAGGGGUU	chr20:31025023-31025331(+)$1	308	278	306	13.7239
AUUUCUGUAUAAGUCUAAUUACAUGAAU	chr11:33376650-33376921(+)$1	271	56	84	15.2733
ggggaggggAGUCACUGAAUGUUUUGUC	chr2:161130039-161130307(-)$1	268	83	111	13.6141
GGAUUUUAUAUAUAUGAUACUAUAGAUA	chr6:126298796-126299164(+)$1	368	242	270	15.7688
UGGACCUUGGUCGUUUUUAUACUAGCAA	chr5:137088381-137088630(-)$1	249	59	87	13.0654
ACAAACAGCUUCUUUAAGACAAGUCUCG	chr5:65376058-65376371(+)$1	313	264	292	13.7411
UAUAUAUUUUGUACUUUGUGGAGAGAAU	chr1:16450955-16451221(-)$1	266	85	113	13.6373
uguguguguguguguguauauauauaua	chr6:132269652-132269884(-)$1	232	85	113	14.2758
UGUGGCUUCUGUUCAUUUCGUUUAAUUA	chr11:27387852-27388097(-)$1	245	121	149	12.8694
AAGAAUGAUUUUUAGAUGAGAUUGUUUU	chr5:142659619-142659884(-)$1	265	79	107	13.2455
GGCUGUUUAAUGAGGACGUUUCACAUUA	chr1:214212397-214212652(+)$1	255	188	216	14.0696
UUAGUGUUUGUACUGCUGCUGGUCAGGA	chr16:85706912-85707190(+)$1	278	196	224	17.2861
UCUAUAAAAUGUAUAUACUUUAUUUUGU	chr6:117882778-117883080(-)$1	302	51	79	14.0307
GUGUCUUAGGUGAAGUUUUGUUCAUGUA	chr12:63038093-63038331(-)$1	238	36	64	11.1174
GCAAAUAUUUCUGAAUGUCUUUGUAAAA	chr13:39623943-39624262(+)$1	319	101	129	13.8505
UGUAUGUGCUUUAUAUUGUUAUUUGUGU	chr2:177202259-177202655(+)$1	396	264	292	14.2745
AAUUUUUUUAUAAAGUGCUUUGUAAAAA	chr11:12965784-12966058(+)$1	274	223	251	14.8909
auuuuauuuGUAUACAGUGUUGUUGAUG	chr2:62451490-62451738(+)$1	248	93	121	17.7046
GUGUGUUUGAUAUUUUUUACGAUAAUUA	chr8:26268626-26268883(+)$1	257	110	138	13.7446
GUUUAAGUAUUUUAAAAAUAUGUAAUAU	chr20:4832957-4833206(-)$1	249	81	109	17.7822
auuuaaauguauuuuuuguauauuuaGA	chr3:123210403-123210654(-)$1	251	76	104	12.8133
AAAUGUUGAUGAAAAUGCAAUUGGGGUU	chr2:39477290-39477558(-)$1	268	141	169	14.7547
AUACGAAACUUUAAAAAGCAUUGGAGUG	chr2:178095158-178095420(-)$1	262	42	70	12.5194
UUUGGUUUGCGUCUUAUUUUAGGGGUUG	chr10:105360597-105360854(-)$1	257	140	168	14.4749
AAUUUUAAGUGGGUGGGGUUAUUUAGAA	chr7:94298344-94298581(+)$1	237	161	189	15.8057
UGAGUUCUGUCAUGAUUCACUAUUCUAG	chr3:195776085-195776391(-)$1	306	52	80	11.7914
AGAAAAGCUACAGCUUCUUUGCGUUUAA	chr2:131904552-131904833(+)$1	281	174	202	12.4949
UGUUUUUCUGUUACCAUAAUGUAAGAGA	chr13:41702490-41702763(-)$1	273	150	178	12.1108
AUAUGGUUAAAAGAUUUUUUUUUUAAUC	chr4:39500876-39501172(-)$1	296	264	292	14.4704
ACGAUGUGAUGAAAUUUGCUUUUUAUCC	chr6:64292165-64292408(+)$1	243	179	207	12.1766
GCUAGCGAACCUAUGCUCAGAUAUUCAU	chr3:113530355-113530638(+)$1	283	172	200	13.8236
UCUUGGUUUGUAAAUUAACUUUUAUAAA	chr15:29992733-29993028(-)$1	295	203	231	16.8879
CUUCCUUUUAUUUUUAUAGGAAUAGAGG	chr7:100781317-100781604(+)$1	287	93	121	14.7106
AGUCAAGUCCCAGUUUGAAUACCAUAGA	chr8:121549100-121549339(-)$1	239	25	53	13.0640
AUAAUAGAGGUACAAUUCGUUGGAUUUU	chr20:52183584-52183849(-)$1	265	56	84	12.8876
AAUGGAUUUAUAGAAUAUUUGUAAAUCU	chr20:43955074-43955329(-)$1	255	45	73	15.7928
UAUUUUAGUUUUAUUUGAGAAAUUAAGA	chr17:63006755-63007034(-)$1	279	220	248	14.4125
UUuauauauauauguauauguauauaua	chr7:45932740-45932957(+)$1	217	23	51	17.6190
UGGGCCAGAGAAGAUAAUGUUCUUUAAU	chr5:74657126-74657364(+)$1	238	130	158	11.0232
guauugaauuauuuuucucugaauaauu	chr4:99992172-99992485(-)$1	313	194	222	13.9617
GAAACGAGCGGGCGCAUUGUUGUCCGCU	chr21:44836043-44836308(-)$1	265	34	62	18.1880
aguugaugaauaguuguuuuauuauuuu	chr19:52516538-52516826(-)$1	288	70	98	12.6403
UUUGUUAGUGGCAGUUUAUCCUGUAAUU	chr13:96446719-96447102(+)$1	383	85	113	11.5536
GUAAAAUGUGUGAAUGUUUCUUUAUGUA	chr13:98675040-98675308(+)$1	268	88	116	16.8879
AUGCAUGCUUUGUAUCAUAUUGAAAAGU	chr11:125827256-125827555(-)$1	299	58	86	16.5095
UAAGAUGUAAAUGUAUUCUCACAUGUAA	chr7:105731918-105732158(-)$1	240	76	104	11.9334
GAACUUUGUUAUAGUUUUAACUCCAAUA	chr10:70550976-70551324(+)$1	348	289	317	14.1373
GUAUAUAGUACCUAGUAUUAUAGGUACU	chr8:128753397-128753663(+)$1	266	141	169	17.6711

#DB
(((((((((...(((....)))))))))	chr16:70284048-70284318(-)$1	1	127	155	14.7622
((((((((...(((......)))..)))	chr10:32094350-32094704(-)$1	1	266	294	12.0256
....(((((...((......)).)))))	chr1:94639118-94639371(-)$1	1	76	104	11.6920
)((((((((((((...))))))))))))	chr20:31025023-31025331(+)$1	1	278	306	13.7239
((((((((.((.((......)).)).))	chr11:33376650-33376921(+)$1	1	56	84	15.2733
(((((((((....((.....))....))	chr2:161130039-161130307(-)$1	1	83	111	13.6141
(((((((((.((((......)))).)))	chr6:126298796-126299164(+)$1	1	242	270	15.7688
.((((.(((.(.((......)).).)))	chr5:137088381-137088630(-)$1	1	59	87	13.0654
(..((((.(..(((......)))....)	chr5:65376058-65376371(+)$1	1	264	292	13.7411
((((((((((.(.((....))).)))))	chr1:16450955-16451221(-)$1	1	85	113	13.6373
((((((((((((((....))))))))))	chr6:132269652-132269884(-)$1	1	85	113	14.2758
.(((((((..(((.(......).)))..	chr11:27387852-27388097(-)$1	1	121	149	12.8694
.(((((((((((.....)))))))))))	chr5:142659619-142659884(-)$1	1	79	107	13.2455
.(((((((((((.(((...))).)))))	chr1:214212397-214212652(+)$1	1	188	216	14.0696
(((((((((..(((......)))..)))	chr16:85706912-85707190(+)$1	1	196	224	17.2861
.((((((((((.........))))))))	chr6:117882778-117883080(-)$1	1	51	79	14.0307
(.((.(((.(((((......))))).))	chr12:63038093-63038331(-)$1	1	36	64	11.1174
((((((((((...((.....))....))	chr13:39623943-39624262(+)$1	1	101	129	13.8505
(((((((((...(((....)))..))))	chr2:177202259-177202655(+)$1	1	264	292	14.2745
..((((((((((((....))))))))))	chr11:12965784-12966058(+)$1	1	223	251	14.8909
((((((((...(((......))).))))	chr2:62451490-62451738(+)$1	1	93	121	17.7046
(((.(((...((((......))))...)	chr8:26268626-26268883(+)$1	1	110	138	13.7446
(((((((((((.((......)).)))))	chr20:4832957-4833206(-)$1	1	81	109	17.7822
.(((((((((((.....)))))))))))	chr3:123210403-123210654(-)$1	1	76	104	12.8133
((((((((((...(((...)))...)))	chr2:39477290-39477558(-)$1	1	141	169	14.7547
((((((.(((((((......))))))).	chr2:178095158-178095420(-)$1	1	42	70	12.5194
(((((...((.(((......))).))..	chr10:105360597-105360854(-)$1	1	140	168	14.4749
.(((((((((((......))))))))))	chr7:94298344-94298581(+)$1	1	161	189	15.8057
.((((((((..(((......)))..)))	chr3:195776085-195776391(-)$1	1	52	80	11.7914
.((((((.((..((......))...)).	chr2:131904552-131904833(+)$1	1	174	202	12.4949
(((((((((.((((......)))).)))	chr13:41702490-41702763(-)$1	1	150	178	12.1108
.(((((((((((((....))))))))))	chr4:39500876-39501172(-)$1	1	264	292	14.4704
((((((.(((((((......))))))))	chr6:64292165-64292408(+)$1	1	179	207	12.1766
(((.((((...(((......)))....)	chr3:113530355-113530638(+)$1	1	172	200	13.8236
))))((((((((((......))))))))	chr15:29992733-29993028(-)$1	1	203	231	16.8879
))))((((((((((....))))))))))	chr7:100781317-100781604(+)$1	1	93	121	14.7106
(((....((...((......))....))	chr8:121549100-121549339(-)$1	1	25	53	13.0640
(.(((((((((.(((....))).)))))	chr20:52183584-52183849(-)$1	1	56	84	12.8876
((((((((((((((...)))))))))))	chr20:43955074-43955329(-)$1	1	45	73	15.7928
..((((((((((......))))))))))	chr17:63006755-63007034(-)$1	1	220	248	14.4125
.(((((((((((((......))))))))	chr7:45932740-45932957(+)$1	1	23	51	17.6190
(((((((..(((((......)))))..)	chr5:74657126-74657364(+)$1	1	130	158	11.0232
)))).(((((((((......))))))))	chr4:99992172-99992485(-)$1	1	194	222	13.9617
.(.(((((((((((......))))))))	chr21:44836043-44836308(-)$1	1	34	62	18.1880
.((....(((((((......))))))).	chr19:52516538-52516826(-)$1	1	70	98	12.6403
((((..(((.((((......)))).)))	chr13:96446719-96447102(+)$1	1	85	113	11.5536
))))((((((((((......))))))))	chr13:98675040-98675308(+)$1	1	88	116	16.8879
..(((((((((.((......)).)))))	chr11:125827256-125827555(-)$1	1	58	86	16.5095
..((((....((((......))))....	chr7:105731918-105732158(-)$1	1	76	104	11.9334
((((((((((..(((....)))..))))	chr10:70550976-70551324(+)$1	1	289	317	14.1373
((.(((((((((((......))))))))	chr8:128753397-128753663(+)$1	1	141	169	17.6711

#PSSM
= : 0.29	h : 0.09	: : 0.09	d : 0.07	$ : 0.05	" : 0.05	[ : 0.05	! : 0.03	g : 0.03	C : 0.01	D : 0.01	% : 0.01	& : 0.01	f : 0.01	c : 0.01	e : 0.01	i : 0.01	b : 0.01	
= : 0.47	h : 0.07	d : 0.07	$ : 0.05	g : 0.05	! : 0.03	[ : 0.03	f : 0.03	b : 0.03	c : 0.01	e : 0.01	i : 0.01	: : 0.01	a : 0.01	
= : 0.52	d : 0.09	h : 0.07	g : 0.05	b : 0.03	f : 0.03	i : 0.03	[ : 0.03	$ : 0.01	! : 0.01	c : 0.01	e : 0.01	
= : 0.54	d : 0.11	h : 0.07	g : 0.05	[ : 0.03	f : 0.03	# : 0.03	i : 0.03	$ : 0.01	b : 0.01	
= : 0.60	d : 0.09	g : 0.03	b : 0.03	# : 0.03	i : 0.03	e : 0.01	[ : 0.01	c : 0.01	h : 0.01	f : 0.01	: : 0.01	! : 0.01	
= : 0.56	d : 0.09	b : 0.05	i : 0.05	c : 0.03	# : 0.03	e : 0.01	[ : 0.01	g : 0.01	" : 0.01	h : 0.01	f : 0.01	! : 0.01	
= : 0.56	d : 0.07	c : 0.07	# : 0.05	i : 0.05	[ : 0.03	e : 0.01	g : 0.01	" : 0.01	h : 0.01	f : 0.01	b : 0.01	
= : 0.56	g : 0.07	d : 0.05	c : 0.05	i : 0.05	[ : 0.03	" : 0.03	e : 0.01	h : 0.01	b : 0.01	! : 0.01	# : 0.01	
= : 0.52	" : 0.07	g : 0.05	b : 0.05	i : 0.05	[ : 0.03	c : 0.03	! : 0.03	e : 0.01	a : 0.01	h : 0.01	d : 0.01	# : 0.01	
= : 0.43	" : 0.15	[ : 0.07	! : 0.07	b : 0.05	g : 0.05	i : 0.05	# : 0.03	e : 0.03	
= : 0.35	" : 0.17	d : 0.09	! : 0.09	g : 0.05	i : 0.05	[ : 0.03	e : 0.03	b : 0.01	# : 0.01	a : 0.01	c : 0.01	
= : 0.31	c : 0.15	" : 0.11	[ : 0.09	d : 0.09	g : 0.05	e : 0.03	! : 0.03	# : 0.01	a : 0.01	r : 0.01	i : 0.01	
c : 0.23	= : 0.21	b : 0.13	d : 0.09	g : 0.05	[ : 0.03	n : 0.03	e : 0.03	" : 0.03	o : 0.03	# : 0.01	r : 0.01	i : 0.01	
c : 0.25	b : 0.19	= : 0.19	d : 0.09	g : 0.05	n : 0.03	e : 0.03	o : 0.03	l : 0.01	[ : 0.01	r : 0.01	i : 0.01	
o : 0.62	c : 0.11	m : 0.07	b : 0.05	l : 0.03	n : 0.03	a : 0.01	r : 0.01	
o : 0.64	m : 0.17	n : 0.07	l : 0.03	c : 0.03	r : 0.01	
o : 0.64	m : 0.17	n : 0.07	l : 0.05	= : 0.01	r : 0.01	
o : 0.64	m : 0.17	= : 0.07	n : 0.03	l : 0.03	r : 0.01	
o : 0.60	= : 0.19	m : 0.09	n : 0.03	l : 0.03	r : 0.01	
o : 0.60	= : 0.19	c : 0.11	n : 0.03	b : 0.01	r : 0.01	
= : 0.31	c : 0.25	b : 0.19	d : 0.09	g : 0.05	e : 0.03	o : 0.01	i : 0.01	
= : 0.31	c : 0.25	b : 0.17	d : 0.09	g : 0.05	a : 0.03	e : 0.03	i : 0.01	
= : 0.33	] : 0.17	c : 0.13	d : 0.09	4 : 0.05	g : 0.05	e : 0.03	2 : 0.03	3 : 0.03	i : 0.01	
= : 0.39	2 : 0.09	4 : 0.09	d : 0.09	e : 0.05	g : 0.05	i : 0.05	] : 0.03	3 : 0.03	b : 0.01	a : 0.01	c : 0.01	
= : 0.45	4 : 0.11	] : 0.07	2 : 0.05	e : 0.05	3 : 0.05	g : 0.05	i : 0.05	b : 0.03	c : 0.01	
= : 0.50	4 : 0.11	c : 0.05	g : 0.05	i : 0.05	d : 0.03	] : 0.03	b : 0.03	e : 0.01	3 : 0.01	h : 0.01	2 : 0.01	
= : 0.56	c : 0.05	4 : 0.05	g : 0.05	i : 0.05	d : 0.03	2 : 0.03	3 : 0.03	b : 0.03	e : 0.01	h : 0.01	
= : 0.56	c : 0.07	d : 0.05	b : 0.05	i : 0.05	] : 0.03	e : 0.01	a : 0.01	2 : 0.01	3 : 0.01	h : 0.01	6 : 0.01	4 : 0.01	

#score	723.5644814108979
#seq	51
#width	28
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF441YAZ_FTO_transcript_m2_run1.txt

#BEAR
"""ccc!!ggggggg[bbmmmmbb22ggggggg22ccc	chr19:2271144-2271453(+)$1	309	30	68	15.7471
dddd[eeeee"""a[a[ammmma]a]a333eeeee]dd	chr2:97559938-97560169(-)$1	231	1	39	13.8948
eeeee[iiiiiiiii[bbmmmmbb]iiiiiiiii]eee	chr5:108719091-108719322(-)$1	231	26	64	16.4121
:eeeeeffffff####bbmmmmbb22ffffff]eeeee	chr19:1147642-1147881(-)$1	239	117	155	13.5257
b!!iiiiiiiii!!ddddmmmmdddd]iiiiiiiii22	chr1:249138658-249138922(+)$1	264	223	261	12.4385
dddd[ddddcccccc[bbmmmmbb]ccc22ccc]dddd	chr19:44118326-44118659(-)$1	333	88	126	15.9850
:ccc[dddd"""bbcccmmmmccc]bb333dddd]ccc	chr5:176074553-176074803(+)$1	250	73	111	11.1932
ee[bb"""bb!!bb!!bbmmmmbb22bb22bb4444bb	chrX:154033472-154033701(-)$1	229	26	64	13.7083
"ccc[ccc[a[gggggggmmmmggggggga]ccc]ccc	chr6:158993816-158994113(+)$1	297	249	287	13.4091
cccccccc[ccc[eeeeemmmmeeeee]ccc]ccc]cc	chr6:10747948-10748214(+)$1	266	82	120	12.0974
eeee[bb[a!!ccc!!bbmmmmbb22ccc22a]bbeee	chr16:85645406-85645653(+)$1	247	33	71	15.4846
ggggggg!!ffffff[bbmmmmbb]ffffff22ggggg	chr4:904348-904616(-)$1	268	226	264	15.0128
eeeffffff[cccbb[bbmmmmbb]bb22cccffffff	chr2:236673929-236674231(+)$1	302	247	285	14.7828
eee[eeeee!!dddd!!ammmma333dddd22eeeeee	chr22:50039685-50039929(-)$1	244	17	55	13.0303
ff============[cccnnnnnccc============	chr17:76124236-76124495(-)$1	259	135	173	10.8329
[dddd[ccc[eeeee[bbmmmmbb]eeeeeccc]dddd	chr14:50360162-50360445(+)$1	283	76	114	14.5081
eeebb[dddd[ccc!!bbmmmmbb22cccdddd]bb::	chr3:176887876-176888151(-)$1	275	82	120	12.6487
"""ccc[dddd$$$$$bbmmmmbb333dddd]ccc333	chr22:49845233-49845488(-)$1	255	2	40	14.2783
[bb[bb[bb[bb[bb[bbmmmmbb]bb]bb]bb]bb]b	chr17:61851499-61851767(+)$1	268	74	112	12.4816
eeeeeeee[ddddaddddmmmmdddd]a]dddd]eeee	chr16:18812651-18812854(-)$1	203	21	59	11.6860
dd[dddd[dddd[a[cccmmmmccc22a]dddd]dddd	chr19:34287181-34287442(+)$1	261	25	63	12.4502
!ffffff[ccc[ccc[cccmmmmccc]cccccc]ffff	chr8:101964435-101964751(-)$1	316	263	301	11.4571
:eeeee!!a[ccc[ddddmmmmdddd]ccc]a22eeee	chr17:34171710-34172052(+)$1	342	201	239	11.7976
[bb[ccc"""a!!cccbbmmmmbb]ccc22a333ccc]	chr11:17298196-17298472(+)$1	276	107	145	16.3279
aggggggg"""gggggggmmmmggggggg]ggggggg3	chr16:730351-730640(+)$1	289	35	73	13.9977
::eeeee!!cccbb!!bbmmmmbb]bb]ccceeeeeee	chr4:89444594-89444885(-)$1	291	219	257	14.1910
eeee[dddd[bb[bb[bbmmmmbb]bbbb]dddd]eee	chr7:73097996-73098275(+)$1	279	175	213	14.7685
dd!!ccc####ccc!!bbmmmmbb]ccc333ccc22dd	chr17:29063689-29063959(+)$1	270	29	67	17.0469
accc[dddd!!cccddddmmmmdddd]ccc22ddddcc	chr22:50036375-50036596(-)$1	221	146	184	11.9376
eee:eeeee[a[ccc[bbmmmmbb]ccc]a]eeeeeBB	chr17:38974979-38975285(-)$1	306	95	133	13.6817
dggggggg!!ccc[a[bbnnnnnbb]a]ccc]gggggg	chr18:77177814-77178090(+)$1	276	136	174	11.8543
b[ggggggg[eeeee[bbmmmmbb]eeeeegggggggb	chr8:145159357-145159696(+)$1	339	89	127	14.7441
ddffffff[cccffffffmmmmffffff]ccc22ffff	chr4:52710224-52710525(+)$1	301	200	238	11.6539
ff"""ggggggg[bb[bbmmmmbb]bb22ggggggg]f	chr19:4037123-4037394(+)$1	271	189	227	15.7846
e!!eeeee[dddd"""bbmmmmbb333dddd]eeeee]	chr6:10749374-10749604(+)$1	230	74	112	15.2416
ddd!!ggggggg[bb[bbmmmmbbbbgggggggdddd]	chr11:638841-639096(+)$1	255	174	212	14.9270
============[eeeeemmmmeeeee===========	chr11:64073198-64073463(+)$1	265	226	264	13.3736
fff[cccccc####ddddmmmmddddccc]ccc]ffff	chr2:232574001-232574240(+)$1	239	94	132	12.0749
gggggg[dddd[ddddbbmmmmbb]dddddddd22ggg	chr17:61851567-61851837(+)$1	270	205	243	13.4634
[ffffff[a!!gggggggmmmmggggggg]a]ffffff	chr19:13261893-13262168(+)$1	275	78	116	12.8069
c[eeeee!!a!!bb!!bbmmmmbb22bb22a]eeeeec	chr22:50013859-50014165(-)$1	306	141	179	16.2592
c[a####dddd[ffffffmmmmffffff22dddd4444	chr19:879140-879469(-)$1	329	29	67	11.8413
cc"""eeeee!!ffffffmmmmffffff]eeeee333c	chr19:2270010-2270272(+)$1	262	213	251	12.5623
cccbb!!a!!bb[bb[bbmmmmbb]bb]bb22a22bb]	chr6:37137887-37138152(+)$1	265	135	173	13.8141
ddddeeeeeccc[a[a[bblllbb]a]a]ccc]eeeee	chr12:132402863-132403120(+)$1	257	120	158	12.5622
d::iiiiiiiii[bb[bbmmmmbb]bb]iiiiiiiii:	chr9:37128292-37128556(+)$1	264	218	256	13.4889
dddd$$$$$ccc[eeeeemmmmeeeee333cccdddd]	chr21:46854050-46854284(+)$1	234	31	69	11.6224
g]gggggggffffff[bbmmmmbb]ffffff:bb[ddd	chr14:50360025-50360317(+)$1	292	213	251	12.6571
b!!dddd$$$$$ffffffmmmmffffff333dddd22b	chr6:86352557-86352828(-)$1	271	136	174	11.4532
dddd[dddd!!eeeeebbmmmmbb]eeeeedddddddd	chr12:121148201-121148544(+)$1	343	172	210	13.8309
dddd[eeeee"""a[a[ammmma]a]a333eeeee]dd	chr2:97559969-97560189(-)$1	220	21	59	13.8948
ee"""bb[a[ccc"""bbmmmmbb]ccc]a]bb]eeee	chr19:862575-862870(+)$1	295	245	283	16.2296
a[eeeee"""bbccc[bbmmmmbb]ccc]bbeeeee]a	chr2:28974796-28975086(+)$1	290	67	105	15.7702
b[ccc$$$$$ccc[cccmmmmccc]ccc22ccc]bb44	chr2:97535592-97535857(-)$1	265	69	107	11.1141
=========!!bb[a[bbmmmmbb]a]bb4444=====	chr1:233749793-233750159(+)$1	366	90	128	16.5386
g####ffffff####cccmmmmccc22ffffffggggg	chr8:74884210-74884507(-)$1	297	94	132	11.9667

#otherMatches

#Seq PSSM
AGUGACUGCUGCCCUUGUAGGUGCUUGGGGCAGGCGUU	chr19:2271144-2271453(+)$1	309	30	68	15.7471
guacgugggugaguggguggggggugggaggccugggu	chr2:97559938-97560169(-)$1	231	1	39	13.8948
ggaggagcagaaguaucaguuuugcuauuuuugugcuu	chr5:108719091-108719322(-)$1	231	26	64	16.4121
AGGCUGGGGUUCUGAAUCGCCAGAAUGAACCCUUAGCC	chr19:1147642-1147881(-)$1	239	117	155	13.5257
CAUUUGCCUUCCUUGGGCAUGUGCCCUGGGAGGCAGUG	chr1:249138658-249138922(+)$1	264	223	261	12.4385
GCCAACAUCCUGUAUUAGAGAACUUGUGGCCGGAGGUG	chr19:44118326-44118659(-)$1	333	88	126	15.9850
AGCACCAGCAUUUCCAGGAACCUGAGGUCGGCUGCUGC	chr5:176074553-176074803(+)$1	250	73	111	11.1932
GCGUUCCAGUGUUCCAGCUUCUGCGAGAUGACCCUCAA	chrX:154033472-154033701(-)$1	229	26	64	13.7083
gugcguguguguauguaugugugugCAUGAGAUGAGUA	chr6:158993816-158994113(+)$1	297	249	287	13.4091
CGCACGCAAUCGCGUUUCCGGAGAGACCUGGCUGCUGU	chr6:10747948-10748214(+)$1	266	82	120	12.0974
UCCCGUCGCAAUCCGGGCUGGCGCGGGGAGGGGGAGGG	chr16:85645406-85645653(+)$1	247	33	71	15.4846
CUGUUCCCGCAGGCCGGCUAGCGCAGGCCUGAAGGGAC	chr4:904348-904616(-)$1	268	226	264	15.0128
GGUCAGUCCUGGUGCCGUGAGCACAGCCAACCGGACUG	chr2:236673929-236674231(+)$1	302	247	285	14.7828
GUCCUGGGGGCGAGGCUCUCAUGUUCCCUCCACCCCAG	chr22:50039685-50039929(-)$1	244	17	55	13.0303
GUGGCCCCAGAGUUGCAGCCGCUCUGGGCUCUGGGGCC	chr17:76124236-76124495(-)$1	259	135	173	10.8329
GUGGCGGCGGCGACUGGAGAAAUCAAGUUGUGCGGUCG	chr14:50360162-50360445(+)$1	283	76	114	14.5081
UGGGAGUUGGAGGUAGUGAUGACAGGAUCCCAGGUCAU	chr3:176887876-176888151(-)$1	275	82	120	12.6487
AGGGCUGAAGGGGAAGGUGUGAGCGUGCUUUGGGCAGG	chr22:49845233-49845488(-)$1	255	2	40	14.2783
gguggcgguggcggcggcggugguggugguggcggcgg	chr17:61851499-61851767(+)$1	268	74	112	12.4816
GUUGGGGAGGUGGCCUGCGCUUGUAGAGACUGCAUCCC	chr16:18812651-18812854(-)$1	203	21	59	11.6860
uggggccugggcgcaccgcucccgggaggguccuggcc	chr19:34287181-34287442(+)$1	261	25	63	12.4502
GGAGUGGCGGCUGCGGGCGAGGACGCGCGCGCCUCCGC	chr8:101964435-101964751(-)$1	316	263	301	11.4571
GGUGGCAGUGGCUACGGUGGAGACCGAAGUGGAGGCUA	chr17:34171710-34172052(+)$1	342	201	239	11.7976
GGGGGCUGGAGGACAGGUUUGUGCGCUGGACGCAAGCA	chr11:17298196-17298472(+)$1	276	107	145	16.3279
CCCCGGCCGGAAGUUCCGGCGGCGGAGCUGGGCCGGGC	chr16:730351-730640(+)$1	289	35	73	13.9977
CUCCAAGAAGCCGCUCAGGUAACUCGCUGGCCUUGGCC	chr4:89444594-89444885(-)$1	291	219	257	14.1910
CGGGAAGCGGCAAGUUGCCCCUGUUGCUGGCGUUGCCC	chr7:73097996-73098275(+)$1	279	175	213	14.7685
ucggcucggcaucagagggagacCAUGGAAAgagaggg	chr17:29063689-29063959(+)$1	270	29	67	17.0469
CUAGCAGCUCAGGCccuugagcagggugcucaagcucu	chr22:50036375-50036596(-)$1	221	146	184	11.9376
ggcaguuccggcggcggcggcggcggcuacgggggcgg	chr17:38974979-38975285(-)$1	306	95	133	13.6817
GAUGGGCUGUGGCGGGAGAUGGGCUAUGGCUGGGCCUG	chr18:77177814-77178090(+)$1	276	136	174	11.8543
cucgcugacucgcCGGAGCGCUCUGUGGCGGUCGGCGG	chr8:145159357-145159696(+)$1	339	89	127	14.7441
GUCGAGGCAGGGUCCCUUGAAGGGGGGAGUCCAAGCUU	chr4:52710224-52710525(+)$1	301	200	238	11.6539
GGGGAGUUGGGGGGGUGGGGCACCUCCAGCCCCGGCGU	chr19:4037123-4037394(+)$1	271	189	227	15.7846
UAGUCUCCUUUCUGGACUGAGAAGAGAAGAAUGGAGAA	chr6:10749374-10749604(+)$1	230	74	112	15.2416
gagguugcagugaguugagaucucaccacugcacucca	chr11:638841-639096(+)$1	255	174	212	14.9270
CUGGCUCUGGCUGCGGGUCCUGACUCGGGUCAGGGUUG	chr11:64073198-64073463(+)$1	265	226	264	13.3736
UGGGCGCCCUUCGAGGUGAGUGCGCCGGGAGCGGCCGC	chr2:232574001-232574240(+)$1	239	94	132	12.0749
UCCUUGGGGGCACUGGAGGCAACUGCUGGGCCUAGCGA	chr17:61851567-61851837(+)$1	270	205	243	13.4634
UGGGCGGGUUAUCUGAGGGAGUCCUCGGAGGGUCGCCC	chr19:13261893-13262168(+)$1	275	78	116	12.8069
cucacuugggaggugacaagcuugggacagcagggugg	chr22:50013859-50014165(-)$1	306	141	179	16.2592
CGUGGGGCUGGGGUUGGUGGGCAUUGACAACCAGGGAA	chr19:879140-879469(-)$1	329	29	67	11.8413
UGGGGGCGGGGUCGGCCUUGGGGGGCUGGUCCGCGGAC	chr19:2270010-2270272(+)$1	262	213	251	12.5623
ggcagcagcagcagcagcagcagcagcagcaACCACUA	chr6:37137887-37138152(+)$1	265	135	173	13.8141
GAUGGGGGCCACGGUGUCUGCUGGUCCUGGUGUGCCCC	chr12:132402863-132403120(+)$1	257	120	158	12.5622
ugauuuuaguauucaauugagaaaaugcauauuagaaa	chr9:37128292-37128556(+)$1	264	218	256	13.4889
AUCCAGAAACCCAGAGGCAGUGGCUUCACCGGGGGGUG	chr21:46854050-46854284(+)$1	234	31	69	11.6224
GUGGCGGCGGCGACUGGAGAAAUCAAGUUGUGCGGUCG	chr14:50360025-50360317(+)$1	292	213	251	12.6571
GCACCGGGAGCGCGCUCGGAGGCGAGUGGAACUGGAUC	chr6:86352557-86352828(-)$1	271	136	174	11.4532
GGCGUCCUGAACCGCCUGAAGGCGCGGCGGCAGGCGCC	chr12:121148201-121148544(+)$1	343	172	210	13.8309
guacgugggugaguggguggggggugggaggccugggu	chr2:97559969-97560189(-)$1	220	21	59	13.8948
UUGGAGCGGGGUGGGGUCGGGGGAACACGUGGUGAGGU	chr19:862575-862870(+)$1	295	245	283	16.2296
GGGAGUUGGAGCCGGGGUCGAAACGCCGCGUGACUUGU	chr2:28974796-28975086(+)$1	290	67	105	15.7702
CGCGGGGAGCCCGAGCCUAggggcgcggagccgggcgg	chr2:97535592-97535857(-)$1	265	69	107	11.1141
ugcggcguuggccuuggcggcggcgguggAGAAGAUGC	chr1:233749793-233750159(+)$1	366	90	128	16.5386
CGGAACCCACCGGAGCAGGCAGCUGGGGGUGGGGGGGC	chr8:74884210-74884507(-)$1	297	94	132	11.9667

#DB
...(((..(((((((.((....))..)))))))..)))	chr19:2271144-2271453(+)$1	1	30	68	15.7471
((((.(((((...(.(.(....).).)...))))).))	chr2:97559938-97560169(-)$1	1	1	39	13.8948
(((((.(((((((((.((....)).))))))))).)))	chr5:108719091-108719322(-)$1	1	26	64	16.4121
.(((((((((((....((....))..)))))).)))))	chr19:1147642-1147881(-)$1	1	117	155	13.5257
(..(((((((((..((((....)))).)))))))))..	chr1:249138658-249138922(+)$1	1	223	261	12.4385
((((.((((((((((.((....)).)))..))).))))	chr19:44118326-44118659(-)$1	1	88	126	15.9850
.(((.((((...(((((....))).))...)))).)))	chr5:176074553-176074803(+)$1	1	73	111	11.1932
((.((...((..((..((....))..))..))....))	chrX:154033472-154033701(-)$1	1	26	64	13.7083
.(((.(((.(.(((((((....)))))))).))).)))	chr6:158993816-158994113(+)$1	1	249	287	13.4091
((((((((.(((.(((((....))))).))).))).))	chr6:10747948-10748214(+)$1	1	82	120	12.0974
((((.((.(..(((..((....))..)))..).)))))	chr16:85645406-85645653(+)$1	1	33	71	15.4846
(((((((..((((((.((....)).))))))..)))))	chr4:904348-904616(-)$1	1	226	264	15.0128
(((((((((.(((((.((....)).))..)))))))))	chr2:236673929-236674231(+)$1	1	247	285	14.7828
(((.(((((..((((..(....)...))))..))))))	chr22:50039685-50039929(-)$1	1	17	55	13.0303
))((((((((((((.(((.....)))))))))))))))	chr17:76124236-76124495(-)$1	1	135	173	10.8329
.((((.(((.(((((.((....)).)))))))).))))	chr14:50360162-50360445(+)$1	1	76	114	14.5081
)))((.((((.(((..((....))..))))))).))..	chr3:176887876-176888151(-)$1	1	82	120	12.6487
...(((.((((.....((....))...)))).)))...	chr22:49845233-49845488(-)$1	1	2	40	14.2783
.((.((.((.((.((.((....)).)).)).)).)).)	chr17:61851499-61851767(+)$1	1	74	112	12.4816
((((((((.(((((((((....)))).).)))).))))	chr16:18812651-18812854(-)$1	1	21	59	11.6860
((.((((.((((.(.(((....)))..).)))).))))	chr19:34287181-34287442(+)$1	1	25	63	12.4502
.((((((.(((.(((.(((....))).)))))).))))	chr8:101964435-101964751(-)$1	1	263	301	11.4571
.(((((..(.(((.((((....)))).))).)..))))	chr17:34171710-34172052(+)$1	1	201	239	11.7976
.((.(((...(..(((((....)).)))..)...))).	chr11:17298196-17298472(+)$1	1	107	145	16.3279
((((((((...(((((((....))))))).))))))).	chr16:730351-730640(+)$1	1	35	73	13.9977
..(((((..(((((..((....)).)).))))))))((	chr4:89444594-89444885(-)$1	1	219	257	14.1910
((((.((((.((.((.((....)).)))).)))).)))	chr7:73097996-73098275(+)$1	1	175	213	14.7685
((..(((....(((..((....)).)))...)))..))	chr17:29063689-29063959(+)$1	1	29	67	17.0469
((((.((((..(((((((....)))).)))..))))))	chr22:50036375-50036596(-)$1	1	146	184	11.9376
))).(((((.(.(((.((....)).))).).)))))))	chr17:38974979-38975285(-)$1	1	95	133	13.6817
((((((((..(((.(.((.....)).).))).))))))	chr18:77177814-77178090(+)$1	1	136	174	11.8543
(.(((((((.(((((.((....)).)))))))))))))	chr8:145159357-145159696(+)$1	1	89	127	14.7441
((((((((.(((((((((....)))))).)))..))))	chr4:52710224-52710525(+)$1	1	200	238	11.6539
((...(((((((.((.((....)).))..))))))).)	chr19:4037123-4037394(+)$1	1	189	227	15.7846
(..(((((.((((...((....))...)))).))))).	chr6:10749374-10749604(+)$1	1	74	112	15.2416
(((..(((((((.((.((....))))))))))))))).	chr11:638841-639096(+)$1	1	174	212	14.9270
((((((((((((.(((((....))))))))))))))))	chr11:64073198-64073463(+)$1	1	226	264	13.3736
(((.((((((....((((....))))))).))).))))	chr2:232574001-232574240(+)$1	1	94	132	12.0749
((((((.((((.((((((....)).))))))))..)))	chr17:61851567-61851837(+)$1	1	205	243	13.4634
.((((((.(..(((((((....))))))).).))))))	chr19:13261893-13262168(+)$1	1	78	116	12.8069
(.(((((..(..((..((....))..))..).))))))	chr22:50013859-50014165(-)$1	1	141	179	16.2592
(.(....((((.((((((....))))))..))))....	chr19:879140-879469(-)$1	1	29	67	11.8413
((...(((((..((((((....)))))).)))))...)	chr19:2270010-2270272(+)$1	1	213	251	12.5623
(((((..(..((.((.((....)).)).))..)..)).	chr6:37137887-37138152(+)$1	1	135	173	13.8141
((((((((((((.(.(.((...)).).).))).)))))	chr12:132402863-132403120(+)$1	1	120	158	12.5622
)..(((((((((.((.((....)).)).))))))))).	chr9:37128292-37128556(+)$1	1	218	256	13.4889
((((.....(((.(((((....)))))...))))))).	chr21:46854050-46854284(+)$1	1	31	69	11.6224
).)))))))((((((.((....)).)))))).((.(((	chr14:50360025-50360317(+)$1	1	213	251	12.6571
(..((((.....((((((....))))))...))))..)	chr6:86352557-86352828(-)$1	1	136	174	11.4532
((((.((((..(((((((....)).)))))))))))))	chr12:121148201-121148544(+)$1	1	172	210	13.8309
((((.(((((...(.(.(....).).)...))))).))	chr2:97559969-97560189(-)$1	1	21	59	13.8948
((...((.(.(((...((....)).))).).)).))))	chr19:862575-862870(+)$1	1	245	283	16.2296
(.(((((...(((((.((....)).))).))))))).)	chr2:28974796-28975086(+)$1	1	67	105	15.7702
(.(((.....(((.(((....))).)))..))).))..	chr2:97535592-97535857(-)$1	1	69	107	11.1141
(((((((((..((.(.((....)).).))....)))))	chr1:233749793-233750159(+)$1	1	90	128	16.5386
(....((((((....(((....)))..)))))))))))	chr8:74884210-74884507(-)$1	1	94	132	11.9667

#PSSM
d : 0.21	e : 0.19	c : 0.08	: : 0.07	b : 0.07	g : 0.07	[ : 0.07	" : 0.05	f : 0.05	a : 0.05	= : 0.03	! : 0.01	
e : 0.21	d : 0.19	c : 0.10	f : 0.08	[ : 0.08	g : 0.07	! : 0.05	" : 0.03	b : 0.03	: : 0.03	= : 0.03	] : 0.01	# : 0.01	
e : 0.23	d : 0.14	c : 0.10	g : 0.10	" : 0.08	! : 0.07	f : 0.07	= : 0.05	[ : 0.03	b : 0.03	a : 0.01	: : 0.01	# : 0.01	
e : 0.17	d : 0.16	c : 0.12	g : 0.10	f : 0.07	[ : 0.07	b : 0.05	= : 0.05	" : 0.05	i : 0.03	! : 0.03	# : 0.03	: : 0.01	
e : 0.19	[ : 0.16	c : 0.12	g : 0.10	b : 0.07	f : 0.07	= : 0.05	d : 0.05	" : 0.05	i : 0.03	# : 0.03	! : 0.01	$ : 0.01	
e : 0.23	g : 0.14	c : 0.12	d : 0.12	f : 0.08	[ : 0.05	b : 0.05	= : 0.05	i : 0.03	$ : 0.03	" : 0.01	# : 0.01	! : 0.01	
e : 0.19	d : 0.14	g : 0.12	f : 0.10	c : 0.10	! : 0.05	i : 0.05	= : 0.05	[ : 0.05	b : 0.03	$ : 0.03	" : 0.01	# : 0.01	
d : 0.16	e : 0.14	g : 0.10	! : 0.08	[ : 0.08	f : 0.07	c : 0.07	i : 0.05	" : 0.05	= : 0.05	$ : 0.05	b : 0.01	# : 0.01	a : 0.01	
d : 0.17	e : 0.10	g : 0.08	[ : 0.08	! : 0.08	a : 0.07	i : 0.05	f : 0.05	= : 0.05	c : 0.05	" : 0.05	$ : 0.05	b : 0.03	# : 0.01	
c : 0.14	! : 0.14	[ : 0.14	d : 0.12	f : 0.07	" : 0.07	g : 0.05	e : 0.05	i : 0.05	a : 0.03	= : 0.03	$ : 0.03	b : 0.01	# : 0.01	
c : 0.21	! : 0.16	d : 0.10	" : 0.07	f : 0.07	b : 0.07	g : 0.05	i : 0.05	[ : 0.03	= : 0.03	e : 0.03	a : 0.03	# : 0.03	$ : 0.01	
c : 0.26	g : 0.10	b : 0.08	! : 0.07	d : 0.07	[ : 0.07	" : 0.05	i : 0.05	f : 0.05	e : 0.05	= : 0.03	$ : 0.03	# : 0.03	
c : 0.23	[ : 0.19	f : 0.10	b : 0.08	g : 0.07	d : 0.07	# : 0.05	e : 0.05	" : 0.03	! : 0.03	i : 0.01	= : 0.01	$ : 0.01	
b : 0.19	c : 0.16	e : 0.10	f : 0.10	a : 0.08	g : 0.07	[ : 0.07	# : 0.05	d : 0.03	" : 0.03	i : 0.01	! : 0.01	= : 0.01	$ : 0.01	
d : 0.12	c : 0.12	b : 0.12	! : 0.10	e : 0.10	f : 0.10	[ : 0.08	g : 0.07	# : 0.03	a : 0.03	" : 0.03	i : 0.01	$ : 0.01	
[ : 0.33	! : 0.12	d : 0.10	c : 0.10	e : 0.07	f : 0.07	a : 0.05	g : 0.05	" : 0.03	# : 0.01	$ : 0.01	
b : 0.55	c : 0.10	d : 0.08	f : 0.07	[ : 0.05	g : 0.05	e : 0.05	! : 0.01	
b : 0.57	d : 0.08	c : 0.07	f : 0.07	a : 0.05	g : 0.05	e : 0.05	m : 0.03	
m : 0.92	n : 0.03	c : 0.01	b : 0.01	
m : 0.94	n : 0.03	l : 0.01	
m : 0.94	n : 0.03	l : 0.01	
m : 0.91	c : 0.03	n : 0.03	l : 0.01	
b : 0.55	d : 0.08	c : 0.07	f : 0.07	a : 0.05	g : 0.05	e : 0.05	n : 0.03	m : 0.01	
b : 0.57	c : 0.10	d : 0.08	f : 0.07	g : 0.05	e : 0.05	] : 0.03	3 : 0.01	
] : 0.42	2 : 0.10	d : 0.08	c : 0.07	f : 0.07	g : 0.05	e : 0.05	3 : 0.05	a : 0.03	b : 0.03	
c : 0.16	b : 0.16	2 : 0.14	d : 0.10	e : 0.10	f : 0.10	] : 0.05	g : 0.05	3 : 0.05	a : 0.03	i : 0.01	
c : 0.17	b : 0.17	f : 0.12	] : 0.12	e : 0.10	g : 0.08	a : 0.05	d : 0.03	3 : 0.03	2 : 0.03	i : 0.01	= : 0.01	
c : 0.23	f : 0.14	] : 0.10	g : 0.08	3 : 0.07	b : 0.07	d : 0.07	e : 0.05	a : 0.05	i : 0.03	2 : 0.03	= : 0.03	
c : 0.16	2 : 0.14	] : 0.14	3 : 0.10	g : 0.08	f : 0.07	d : 0.07	b : 0.07	i : 0.05	e : 0.05	= : 0.03	
c : 0.16	2 : 0.12	d : 0.12	3 : 0.10	f : 0.07	e : 0.07	] : 0.07	g : 0.05	i : 0.05	a : 0.05	b : 0.05	= : 0.03	4 : 0.01	
c : 0.21	d : 0.17	g : 0.08	] : 0.08	f : 0.07	2 : 0.07	e : 0.05	i : 0.05	a : 0.05	b : 0.03	= : 0.03	3 : 0.03	4 : 0.01	
c : 0.19	d : 0.16	e : 0.10	] : 0.10	g : 0.08	2 : 0.07	i : 0.05	b : 0.05	f : 0.03	a : 0.03	= : 0.03	3 : 0.01	: : 0.01	4 : 0.01	
c : 0.17	d : 0.17	e : 0.16	g : 0.10	i : 0.05	] : 0.05	2 : 0.05	f : 0.05	b : 0.05	4 : 0.03	= : 0.03	3 : 0.01	a : 0.01	
e : 0.19	] : 0.17	d : 0.14	g : 0.10	2 : 0.08	c : 0.07	i : 0.05	= : 0.05	b : 0.03	f : 0.03	4 : 0.01	3 : 0.01	
e : 0.23	d : 0.14	g : 0.10	f : 0.08	2 : 0.07	] : 0.07	b : 0.07	c : 0.05	= : 0.05	i : 0.03	4 : 0.03	3 : 0.01	[ : 0.01	
e : 0.24	d : 0.14	g : 0.12	f : 0.08	c : 0.07	b : 0.07	] : 0.05	= : 0.05	i : 0.03	4 : 0.03	3 : 0.03	2 : 0.03	
e : 0.21	d : 0.17	c : 0.10	g : 0.10	f : 0.08	= : 0.05	] : 0.05	2 : 0.03	b : 0.03	3 : 0.03	4 : 0.03	: : 0.01	B : 0.01	i : 0.01	
e : 0.17	d : 0.14	c : 0.12	f : 0.10	] : 0.08	b : 0.07	g : 0.07	= : 0.05	: : 0.03	3 : 0.03	4 : 0.03	2 : 0.01	B : 0.01	a : 0.01	

#score	762.3463625877764
#seq	56
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF667MXK_DDX3X_CDS_m1_run2.txt

#BEAR
dd[a"""eeeee[aooooooa]eeeee333a]ddddeeee	chr21:27101862-27102098(-)$1	236	122	162	11.7335
dd!!iiiiiiiiicccooooooccc22iiiiiiiii333d	chr11:14541741-14541993(-)$1	252	198	238	16.4610
c####hhhhhhhh!!bbnnnnnbb22hhhhhhhhccc444	chr5:150138323-150138672(-)$1	349	59	99	13.2662
####bb[ccc[ccc[bboooooobbcccccc]bb4444hh	chr9:4793011-4793299(+)$1	288	43	83	13.1439
c[bb####dddd!!cccnnnnnccc22dddd333bb]ccc	chr3:119217318-119217700(+)$1	382	128	168	14.9493
eeeee[dddd!!accc[bblllbbccc]a333ddddeeee	chr16:83841607-83841827(+)$1	220	159	199	12.2757
cc!!===========[annnnna]===========ccca:	chr3:49059454-49059700(+)$1	246	3	43	16.2063
eeeeebb[a[a[ggggggglllggggggg]a]a]bb]eee	chr4:79697514-79697801(+)$1	287	19	59	11.8960
[a[ccc[ccc[bb[cccmmmmccc]bb]ccc]ccc22a]d	chr7:16685078-16685353(-)$1	275	9	49	11.5532
ddd"""dddd"""cccooooooccc22dddd333dddd]c	chrX:100662678-100662986(-)$1	308	189	229	14.4784
iiiiiiii####cccrrrrrrrrrccc4444iiiiiiiii	chr12:110719508-110719802(+)$1	294	12	52	12.2841
gggg[ccc[dddd[ddddoooooodddd333dddd333cc	chr3:49412772-49413069(-)$1	297	78	118	11.8524
ee]a==========a[annnnna]a]==========::::	chr2:75185794-75186064(+)$1	270	84	124	13.0268
h$$$$$ggggggg[bboooooobb]ggggggg22hhhhhh	chr2:74692232-74692530(-)$1	298	226	266	12.4831
ccc"""dddd[ccc[bbnnnnnbbccc]dddd]ccc333b	chr3:185216610-185216899(-)$1	289	190	230	14.7139
####ffffff"""cccooooooccc333ffffffiiiiii	chr6:84569344-84569602(+)$1	258	149	189	14.0185
bb[bb[ggggggg[cccooooooccc22gggggggbbbb]	chr6:44225042-44225283(-)$1	241	165	205	13.2503
!ffffff!!dddd[a[annnnna]a]dddd4444ffffff	chr20:60962283-60962508(+)$1	225	151	191	13.5018
ggg[ggggggg!!eeeeellleeeee]ggggggg22gggg	chr2:10952702-10952956(-)$1	254	189	229	11.5527
eee"""iiiiiiiii[aooooooa]iiiiiiiii]eeeee	chr1:15736306-15736660(+)$1	354	2	42	15.7177
ddd[ccc"""dddd[bbnnnnnbb]dddd333ccc]dddd	chr1:87369011-87369232(-)$1	221	56	96	14.3669
gggccc!!eeeee[cccnnnnnccc]eeeee]ccc333gg	chr14:104381395-104381608(-)$1	213	126	166	15.8404
eeeeebbeeeee[cccooooooccc]eeeee]bb]eeeee	chr8:86019454-86019723(+)$1	269	55	95	13.0032
a[bb[ccc[a[ccc[aooooooa]ccca]ccc]bb]a]bb	chr21:34697268-34697538(+)$1	270	150	190	13.1114
eeeeedddd[a[ggggggglllggggggg]a]ddddcccd	chr17:27211175-27211418(-)$1	243	95	135	11.5627
[a[ccc####ggggggglllggggggg]ccc]a]gggggg	chr17:56428739-56428969(-)$1	230	17	57	13.0259
eeee!!dddd[ccccccnnnnnccc]ccc333dddd333e	chr12:122516601-122516866(+)$1	265	91	131	16.2229
ee[iiiiiiiii"""bbnnnnnbb22iiiiiiiii]eeee	chr15:44045921-44046168(+)$1	247	94	134	16.5444
eeee!!ffffff[ddddnnnnnddddffffff333eeeee	chr3:128968359-128968674(+)$1	315	36	76	12.7139
=========[ffffff[bblllbb]ffffff]========	chr6:26104082-26104373(+)$1	291	227	267	12.0274
c[ccc!!ccc!!ddddoooooodddd22ccc]ccc]ccc]	chr14:24615331-24615549(-)$1	218	38	78	13.9965
[ggggggg[eeeeecccnnnnnccc]eeeeegggggggdd	chr19:33071998-33072332(+)$1	334	270	310	14.9551
eeee"""dddd[cccbbnnnnnbb333ccc]dddd333ee	chr7:156432573-156432812(-)$1	239	61	101	15.3766
$dddd!!eeeee!!cccnnnnnccc333eeeee]dddd33	chr5:893045-893302(+)$1	257	158	198	14.6245
:ggggggg!!ccc[cccnnnnncccccc]ggggggg:ddd	chr15:41057925-41058205(+)$1	280	23	63	14.0553
[ccc[a[a[abb[cccnnnnnccc]bb]a]a]accc]eee	chr20:37554984-37555258(+)$1	274	82	122	13.7900
bb####ggggggg!!ddddllldddd22gggggggbbccc	chr9:140135721-140135965(+)$1	244	132	172	11.6638
fffffccc[ccc[acccnnnnnccc]a]ccc22ccc333f	chr1:46806367-46806616(+)$1	249	111	151	15.7841
d!!ccc!!gggggggbbnnnnnbb]ggggggg]cccdddd	chr16:88772802-88773107(+)$1	305	205	245	15.4697
ddd!!==========oooooo==========4444dddd:	chr17:56769879-56770139(+)$1	260	58	98	13.6137
::iiiiiiiii"""cccnnnnnccc22iiiiiiiiiffff	chr13:31037711-31037931(-)$1	220	164	204	14.7678
%eeeee####ccc!!bbnnnnnbb22ccc333eeeee666	chr4:57307728-57307949(+)$1	221	84	124	13.1126
eeee[ccc[dddd[cccnnnnnccc]dddd]ccceeeee]	chr1:54303775-54304098(-)$1	323	216	256	15.0773
cgggggggggggggg[ammmmaggggggg4444ggggggg	chr11:65655704-65655957(-)$1	253	127	167	12.9456
edddd[ggggggg!!cccmmmmccc333gggggggdddd]	chr3:141457045-141457312(+)$1	267	112	152	12.7195
========[agggggggnnnnnggggggg]a]========	chr20:44485808-44486113(-)$1	305	99	139	16.8267
:gggggggaccc[ddddnnnnndddd]ccc333a]ggggg	chr11:126173885-126174169(+)$1	284	39	79	13.9096
ccc[hhhhhhhh!!cccnnnnnccc22hhhhhhhh]ccc]	chr14:23564085-23564431(-)$1	346	118	158	13.8221
e!!ccc####ccc[abboooooobb]a]ccc22ccceeee	chr2:99802539-99802771(+)$1	232	96	136	14.8413
"eeeeedddd!!eeeeennnnneeeee22dddd22eeeee	chr6:170862187-170862411(-)$1	224	71	111	11.4639
####bb"""gggggggoooooogggggggbb333eeeee2	chr4:107246074-107246345(+)$1	271	168	208	14.1098
bb!!dddd[eeeee[aooooooa]eeeee333ddddbb]c	chr22:41252436-41252701(-)$1	265	58	98	12.2831
ee]bbccc!!dddd[bboooooobb]dddd22ccceeeee	chr11:2398660-2398913(+)$1	253	99	139	12.5179
iiiiiii[bb"""a[bbnnnnnbba]bb22iiiiiiiii:	chr7:99747087-99747303(+)$1	216	133	173	13.8941

#otherMatches

#Seq PSSM
GUGGACAAGAUUAGAGAAUACAAAUCUAAGCGACAGUAAG	chr21:27101862-27102098(-)$1	236	122	162	11.7335
ACUGGGGGAUGACGAGCCACCUCUCCUGUCAUCCUUAGCG	chr11:14541741-14541993(-)$1	252	198	238	16.4610
CGCUGGCUCUCGGGUCACGUGAUGCGCCGGGAGCGUCAUC	chr5:150138323-150138672(-)$1	349	59	99	13.2662
CUCUCGGGCUGCUCACGUCUCUUCGGAGAGCGCGCACAUG	chr9:4793011-4793299(+)$1	288	43	83	13.1439
GAGCCCUCUGGCAGAGGGUUAACCUGGGUCAAAUGCACGG	chr3:119217318-119217700(+)$1	382	128	168	14.9493
GGGCGGCGCCGGGCCAAGCCCUGCUGGACAGAGGCGCGCC	chr16:83841607-83841827(+)$1	220	159	199	12.2757
CUGUGCGGUGCCCUCCGGGACGCAGGGGGCGCUGCAGCCA	chr3:49059454-49059700(+)$1	246	3	43	16.2063
GGGCCCAGGCUGUGCGCUUGGGGAGCGCGGAAUGUGAGGC	chr4:79697514-79697801(+)$1	287	19	59	11.8960
GGAGAGAAGCGAAGCGUUUCCGCGGUUGGCUACUCAGUGU	chr7:16685078-16685353(-)$1	275	9	49	11.5532
UGGACAAUGGAUUGGCAAGGACGCCUACCAUGGGCUGGCU	chrX:100662678-100662986(-)$1	308	189	229	14.4784
CCGCGGCCGGAGUGCGAGGCGGAGGCGAGGAGGCCGCGGG	chr12:110719508-110719802(+)$1	294	12	52	12.2841
UUGGUGAUGGAGCCUGUGGAAAGACAUGCUUGCUCAUAGU	chr3:49412772-49413069(-)$1	297	78	118	11.8524
UCGCAGCCCCAGGCCCCAACGAGUGUGCCUGGGGCUCGUC	chr2:75185794-75186064(+)$1	270	84	124	13.0268
GGGGAggccccgggcgacgggacggccggggcggcgggcc	chr2:74692232-74692530(-)$1	298	226	266	12.4831
GCACCUUCGCCUUGUACUUGCUGUCGACGCGACUGCCCCG	chr3:185216610-185216899(-)$1	289	190	230	14.7139
GUUUGAAGAUGCUGAACGUCCCUUCCCAGUCUUUCCCGGC	chr6:84569344-84569602(+)$1	258	149	189	14.0185
GCGAGCUCACGUGACCGAGCCCCCGGGCCACGUGACUGCC	chr6:44225042-44225283(-)$1	241	165	205	13.2503
CGCGGAAAUGGUAAGCGCCCCCCACAUGCCUCUCUUCCGU	chr20:60962283-60962508(+)$1	225	151	191	13.5018
GGGUCGGCCUGAAAGGUUUCGAAUCUCUAGGCCGUUcccc	chr2:10952702-10952956(-)$1	254	189	229	11.5527
cccgggggcgggggcggggcgcgcgguccccgccAGGGCC	chr1:15736306-15736660(+)$1	354	2	42	15.7177
GUAUAAAUAUGGAAUUGUGUUUUAUUUCCCAUUUUUUAUU	chr1:87369011-87369232(-)$1	221	56	96	14.3669
CUACUACACCAAAGUUUACCAGGAGAUUUGGAUAGGAAUG	chr14:104381395-104381608(-)$1	213	126	166	15.8404
CCGCUCCCCGUCGCCAGUGCUAUGGAggcggcggcggcgg	chr8:86019454-86019723(+)$1	269	55	95	13.0032
UGUUGUCCGCAGCCGCAGGUGAGAGGCGGGGAGGAGAGUC	chr21:34697268-34697538(+)$1	270	150	190	13.1114
GAGAUUAUGACGUUGCAGCCCCGCUGCGAGGACGUAGAGA	chr17:27211175-27211418(-)$1	243	95	135	11.5627
UCGAAGUAUUGAGAAAGCUACUUUUUCUCUUGGUCUUGUU	chr17:56428739-56428969(-)$1	230	17	57	13.0259
cccUCUGCCUCGCGCGCUUGUCGCGUUGCCCCGGGCUCCG	chr12:122516601-122516866(+)$1	265	91	131	16.2229
AUAUAGGUGUGGACACUGCAAGAGACUUGCACCUGAGUAU	chr15:44045921-44046168(+)$1	247	94	134	16.5444
GCGCAGGCGCAGAGCGCGGAAUGCGCCUGCGCAGAGCGCU	chr3:128968359-128968674(+)$1	315	36	76	12.7139
GCGCAUUUCCGGUCUUAUCUAUGAGGAGACUCGAGGUGUG	chr6:26104082-26104373(+)$1	291	227	267	12.0274
UGGGUGGAAGCUUUUGACAACCCAGACCCUUAACCAACAU	chr14:24615331-24615549(-)$1	218	38	78	13.9965
CGGGGCGCCGCCCUCGCCCGGAGUGUAGGGCGCGCCUCCG	chr19:33071998-33072332(+)$1	334	270	310	14.9551
CAGGCCCGGGUGAGCCCUGCGUGGCCCGCUGGCCUUUUCC	chr7:156432573-156432812(-)$1	239	61	101	15.3766
AGGUGAGCCGGACCUGUCCGACACAUCCUCUGGGCACCCA	chr5:893045-893302(+)$1	257	158	198	14.6245
AGGGGAGGAAGGACAGGCAAGACCUUCCACCUCCUCCUGG	chr15:41057925-41058205(+)$1	280	23	63	14.0553
GUCGAGUCCGAGCGCCGCCAUGGCUCUGCUGUCCGAGGGC	chr20:37554984-37555258(+)$1	274	82	122	13.7900
CCAAAUCGGCGCCAAGGUAAGUUGCCGGGGCGCUGGGGCC	chr9:140135721-140135965(+)$1	244	132	172	11.6638
ACCCCGUGGAGCACGCCGAUAUGGCUGCGCUGACACUGAG	chr1:46806367-46806616(+)$1	249	111	151	15.7841
UAAGAGCUGGCGGCCGGACCCGCCAGGCCGCCCCUCGCCU	chr16:88772802-88773107(+)$1	305	205	245	15.4697
UCACGCCGCACGCCCCAGCGAGGGCGUGCGGAGUUUGGCU	chr17:56769879-56770139(+)$1	260	58	98	13.6137
AUUUUUUGUGCAAACUUGUCGGGAGGAGCAUAAGAAGAAG	chr13:31037711-31037931(-)$1	220	164	204	14.7678
CAUUUUAUUUCCACAGUACUGAACAUUGGUAAAAAAUUAU	chr4:57307728-57307949(+)$1	221	84	124	13.1126
GGCGCGUGAGUGCGGCGUGCACUGUGGCACGCACUGCCAG	chr1:54303775-54304098(-)$1	323	216	256	15.0773
UCGCCUCUGGCUCGAUGGUUACUCGGGUCCGUGAGGGGCG	chr11:65655704-65655957(-)$1	253	127	167	12.9456
UCCGCCGUCGGCUCCGCGGCGCCGCCAUGGCCGACGUGGA	chr3:141457045-141457312(+)$1	267	112	152	12.7195
CUGUGUAUGUCUCCGCGUCUUCCGCGGAGCGGGUGUGCAG	chr20:44485808-44486113(-)$1	305	99	139	16.8267
AGGGGCGGGGCCAGCGCAGGGGGCGCAGGCGCACACCGCC	chr11:126173885-126174169(+)$1	284	39	79	13.9096
GCUGGAGGAGGUGACUCUGGACGGGAAGCCUCUUCAGGCG	chr14:23564085-23564431(-)$1	346	118	158	13.8221
ACAGCCUCUAAAGAGAGCAAUCACUACACUUAUGGCUGGG	chr2:99802539-99802771(+)$1	232	96	136	14.8413
CAGCCGUGCGAUGUUGUCCUCUACAGCCAUGUAUUCGGCU	chr6:170862187-170862411(-)$1	224	71	111	11.4639
AGCAGCAAGUUUCUCUACUUAAGGAGAAAGCAAGUAAGAA	chr4:107246074-107246345(+)$1	271	168	208	14.1098
CUUGCGGCAGCCGCCCCCUUCUGCGCGGUCACGCCGAGCC	chr22:41252436-41252701(-)$1	265	58	98	12.2831
cgcccgccgcccgcgccgccAUGGGAGUGGAGGGCUGCAC	chr11:2398660-2398913(+)$1	253	99	139	12.5179
AGGGGGUCCCUUAGUGCACACAGCCCGGUAACCCCUUCUA	chr7:99747087-99747303(+)$1	216	133	173	13.8941

#DB
((.(...(((((.(......).)))))...).))))((((	chr21:27101862-27102098(-)$1	1	122	162	11.7335
((..((((((((((((......)))..)))))))))...)	chr11:14541741-14541993(-)$1	1	198	238	16.4610
(....((((((((..((.....))..)))))))))))...	chr5:150138323-150138672(-)$1	1	59	99	13.2662
....((.(((.(((.((......)))))))).))....))	chr9:4793011-4793299(+)$1	1	43	83	13.1439
(.((....((((..(((.....)))..))))...)).)))	chr3:119217318-119217700(+)$1	1	128	168	14.9493
(((((.((((..((((.((...))))).)...))))))))	chr16:83841607-83841827(+)$1	1	159	199	12.2757
((..(((((((((((.(.....).))))))))))))))).	chr3:49059454-49059700(+)$1	1	3	43	16.2063
(((((((.(.(.(((((((...))))))).).).)).)))	chr4:79697514-79697801(+)$1	1	19	59	11.8960
.(.(((.(((.((.(((....))).)).))).)))..).)	chr7:16685078-16685353(-)$1	1	9	49	11.5532
(((...((((...(((......)))..))))...)))).)	chrX:100662678-100662986(-)$1	1	189	229	14.4784
((((((((....(((.........)))....)))))))))	chr12:110719508-110719802(+)$1	1	12	52	12.2841
((((.(((.((((.((((......))))...))))...))	chr3:49412772-49413069(-)$1	1	78	118	11.8524
)).)(((((((((((.(.....).).))))))))))....	chr2:75185794-75186064(+)$1	1	84	124	13.0268
(.....(((((((.((......)).)))))))..))))))	chr2:74692232-74692530(-)$1	1	226	266	12.4831
(((...((((.(((.((.....))))).)))).)))...)	chr3:185216610-185216899(-)$1	1	190	230	14.7139
....((((((...(((......)))...))))))))))))	chr6:84569344-84569602(+)$1	1	149	189	14.0185
((.((.(((((((.(((......)))..))))))))))).	chr6:44225042-44225283(-)$1	1	165	205	13.2503
.((((((..((((.(.(.....).).))))....))))))	chr20:60962283-60962508(+)$1	1	151	191	13.5018
(((.(((((((..(((((...))))).)))))))..))))	chr2:10952702-10952956(-)$1	1	189	229	11.5527
(((...(((((((((.(......).))))))))).)))))	chr1:15736306-15736660(+)$1	1	2	42	15.7177
(((.(((...((((.((.....)).))))...))).))))	chr1:87369011-87369232(-)$1	1	56	96	14.3669
((((((..(((((.(((.....))).))))).)))...))	chr14:104381395-104381608(-)$1	1	126	166	15.8404
((((((((((((.(((......))).))))).)).)))))	chr8:86019454-86019723(+)$1	1	55	95	13.0032
(.((.(((.(.(((.(......).)))).))).)).).))	chr21:34697268-34697538(+)$1	1	150	190	13.1114
)))))((((.(.(((((((...))))))).).))))((((	chr17:27211175-27211418(-)$1	1	95	135	11.5627
.(.(((....(((((((...))))))).))).).))))))	chr17:56428739-56428969(-)$1	1	17	57	13.0259
((((..((((.((((((.....))).)))...))))...)	chr12:122516601-122516866(+)$1	1	91	131	16.2229
((.(((((((((...((.....))..))))))))).))))	chr15:44045921-44046168(+)$1	1	94	134	16.5444
((((..((((((.((((.....))))))))))...)))))	chr3:128968359-128968674(+)$1	1	36	76	12.7139
(((((((((.((((((.((...)).)))))).))))))))	chr6:26104082-26104373(+)$1	1	227	267	12.0274
(.(((..(((..((((......))))..))).))).))).	chr14:24615331-24615549(-)$1	1	38	78	13.9965
.(((((((.((((((((.....))).))))))))))))))	chr19:33071998-33072332(+)$1	1	270	310	14.9551
((((...((((.(((((.....))...))).))))...))	chr7:156432573-156432812(-)$1	1	61	101	15.3766
.((((..(((((..(((.....)))...))))).))))..	chr5:893045-893302(+)$1	1	158	198	14.6245
.(((((((..(((.(((.....)))))).))))))).(((	chr15:41057925-41058205(+)$1	1	23	63	14.0553
.(((.(.(.(((.(((.....))).)).).).)))).)))	chr20:37554984-37555258(+)$1	1	82	122	13.7900
((....(((((((..((((...))))..))))))))))))	chr9:140135721-140135965(+)$1	1	132	172	11.6638
((((((((.(((.((((.....))).).)))..)))...)	chr1:46806367-46806616(+)$1	1	111	151	15.7841
(..(((..(((((((((.....)).))))))).)))))))	chr16:88772802-88773107(+)$1	1	205	245	15.4697
(((..((((((((((......))))))))))....)))).	chr17:56769879-56770139(+)$1	1	58	98	13.6137
..(((((((((...(((.....)))..)))))))))((((	chr13:31037711-31037931(-)$1	1	164	204	14.7678
.(((((....(((..((.....))..)))...)))))...	chr4:57307728-57307949(+)$1	1	84	124	13.1126
((((.(((.((((.(((.....))).)))).)))))))).	chr1:54303775-54304098(-)$1	1	216	256	15.0773
(((((((((((((((.(....))))))))....)))))))	chr11:65655704-65655957(-)$1	1	127	167	12.9456
(((((.(((((((..(((....)))...))))))))))).	chr3:141457045-141457312(+)$1	1	112	152	12.7195
((((((((.((((((((.....))))))).).))))))))	chr20:44485808-44486113(-)$1	1	99	139	16.8267
.(((((((((((.((((.....)))).)))...).)))))	chr11:126173885-126174169(+)$1	1	39	79	13.9096
(((.((((((((..(((.....)))..)))))))).))).	chr14:23564085-23564431(-)$1	1	118	158	13.8221
(..(((....(((.(((......)).).)))..)))))))	chr2:99802539-99802771(+)$1	1	96	136	14.8413
.(((((((((..(((((.....)))))..))))..)))))	chr6:170862187-170862411(-)$1	1	71	111	11.4639
....((...(((((((......)))))))))...))))).	chr4:107246074-107246345(+)$1	1	168	208	14.1098
((..((((.(((((.(......).)))))...)))))).)	chr22:41252436-41252701(-)$1	1	58	98	12.2831
)).))(((..((((.((......)).))))..)))(((((	chr11:2398660-2398913(+)$1	1	99	139	12.5179
(((((((.((...(.((.....))).))..))))))))).	chr7:99747087-99747303(+)$1	1	133	173	13.8941

#PSSM
e : 0.25	c : 0.12	d : 0.11	[ : 0.07	# : 0.05	g : 0.05	b : 0.05	: : 0.05	i : 0.03	= : 0.03	h : 0.01	! : 0.01	a : 0.01	$ : 0.01	f : 0.01	% : 0.01	" : 0.01	
e : 0.25	d : 0.12	g : 0.12	# : 0.07	c : 0.07	[ : 0.05	b : 0.05	a : 0.03	i : 0.03	f : 0.03	= : 0.03	! : 0.03	$ : 0.01	: : 0.01	
e : 0.20	g : 0.12	[ : 0.09	! : 0.09	# : 0.09	d : 0.09	c : 0.07	i : 0.05	b : 0.03	] : 0.03	f : 0.03	= : 0.03	$ : 0.01	
e : 0.18	c : 0.12	# : 0.09	g : 0.09	! : 0.07	b : 0.07	i : 0.07	" : 0.05	[ : 0.05	a : 0.03	f : 0.03	= : 0.03	d : 0.03	$ : 0.01	
c : 0.12	e : 0.11	" : 0.09	i : 0.09	g : 0.09	b : 0.07	= : 0.07	[ : 0.07	# : 0.05	f : 0.05	! : 0.05	d : 0.05	$ : 0.01	h : 0.01	
c : 0.20	" : 0.09	i : 0.09	= : 0.09	g : 0.09	b : 0.07	! : 0.07	[ : 0.05	h : 0.03	# : 0.03	f : 0.03	d : 0.03	e : 0.03	$ : 0.01	a : 0.01	
g : 0.16	d : 0.12	i : 0.11	c : 0.11	= : 0.09	# : 0.07	! : 0.07	" : 0.05	[ : 0.05	f : 0.05	h : 0.03	b : 0.03	
g : 0.16	c : 0.14	d : 0.14	i : 0.09	= : 0.09	# : 0.07	e : 0.05	! : 0.05	h : 0.03	[ : 0.03	f : 0.03	" : 0.03	a : 0.01	
d : 0.14	[ : 0.14	g : 0.12	e : 0.07	i : 0.07	= : 0.07	# : 0.07	c : 0.05	! : 0.05	h : 0.03	a : 0.03	f : 0.03	" : 0.03	b : 0.01	
d : 0.18	g : 0.14	e : 0.11	c : 0.09	i : 0.07	# : 0.07	= : 0.05	[ : 0.05	a : 0.05	h : 0.03	f : 0.03	! : 0.03	" : 0.01	b : 0.01	
g : 0.18	d : 0.12	e : 0.11	[ : 0.09	c : 0.09	i : 0.07	! : 0.05	= : 0.05	" : 0.05	h : 0.03	a : 0.03	f : 0.03	# : 0.01	b : 0.01	
c : 0.16	g : 0.16	e : 0.11	d : 0.11	! : 0.07	" : 0.07	i : 0.05	= : 0.05	[ : 0.05	h : 0.03	b : 0.03	f : 0.03	# : 0.01	
g : 0.20	c : 0.16	[ : 0.11	d : 0.11	" : 0.09	! : 0.07	e : 0.07	= : 0.05	i : 0.03	h : 0.01	a : 0.01	b : 0.01	f : 0.01	
c : 0.22	[ : 0.16	! : 0.12	g : 0.12	d : 0.09	e : 0.07	a : 0.05	= : 0.05	" : 0.03	i : 0.01	f : 0.01	
c : 0.37	[ : 0.12	g : 0.12	! : 0.07	d : 0.07	a : 0.05	= : 0.03	e : 0.03	o : 0.01	b : 0.01	i : 0.01	" : 0.01	f : 0.01	
c : 0.35	b : 0.22	[ : 0.09	g : 0.09	d : 0.09	o : 0.03	e : 0.03	a : 0.03	r : 0.01	f : 0.01	
c : 0.24	o : 0.20	b : 0.20	a : 0.09	g : 0.07	d : 0.07	[ : 0.03	e : 0.03	r : 0.01	n : 0.01	
n : 0.48	o : 0.29	b : 0.03	g : 0.03	m : 0.03	d : 0.03	r : 0.01	e : 0.01	l : 0.01	c : 0.01	
n : 0.48	o : 0.31	m : 0.05	b : 0.03	g : 0.03	l : 0.03	r : 0.01	d : 0.01	
n : 0.48	o : 0.31	l : 0.12	m : 0.05	r : 0.01	
n : 0.48	o : 0.29	l : 0.11	m : 0.05	a : 0.01	r : 0.01	g : 0.01	
n : 0.46	o : 0.27	l : 0.09	c : 0.03	] : 0.01	r : 0.01	e : 0.01	g : 0.01	= : 0.01	a : 0.01	m : 0.01	
c : 0.31	b : 0.20	o : 0.11	g : 0.11	a : 0.09	d : 0.07	e : 0.05	r : 0.01	= : 0.01	
c : 0.33	b : 0.25	g : 0.11	] : 0.09	d : 0.07	e : 0.05	r : 0.01	o : 0.01	a : 0.01	= : 0.01	
c : 0.37	] : 0.12	g : 0.11	d : 0.09	e : 0.07	2 : 0.05	b : 0.05	a : 0.05	= : 0.03	3 : 0.01	
] : 0.20	2 : 0.14	g : 0.14	c : 0.12	d : 0.11	e : 0.07	3 : 0.07	= : 0.03	b : 0.03	i : 0.01	f : 0.01	
2 : 0.14	c : 0.14	g : 0.14	e : 0.11	d : 0.09	3 : 0.07	= : 0.05	b : 0.05	] : 0.03	i : 0.03	f : 0.03	a : 0.03	h : 0.01	
g : 0.14	d : 0.12	] : 0.12	c : 0.11	3 : 0.07	i : 0.07	2 : 0.07	e : 0.07	= : 0.05	h : 0.03	f : 0.03	4 : 0.01	a : 0.01	b : 0.01	
g : 0.20	c : 0.18	d : 0.12	e : 0.09	i : 0.07	= : 0.05	f : 0.05	3 : 0.03	h : 0.03	a : 0.03	] : 0.03	2 : 0.03	4 : 0.01	
c : 0.16	3 : 0.12	d : 0.12	g : 0.12	i : 0.07	] : 0.07	e : 0.07	= : 0.05	f : 0.05	h : 0.03	4 : 0.03	b : 0.01	2 : 0.01	
c : 0.12	3 : 0.12	g : 0.12	a : 0.09	i : 0.09	d : 0.07	e : 0.07	= : 0.05	4 : 0.05	f : 0.05	h : 0.03	] : 0.03	b : 0.01	2 : 0.01	
] : 0.22	3 : 0.16	g : 0.14	i : 0.11	d : 0.07	4 : 0.05	2 : 0.05	h : 0.03	= : 0.03	f : 0.03	c : 0.03	e : 0.01	
d : 0.14	i : 0.11	c : 0.11	g : 0.11	3 : 0.09	= : 0.07	a : 0.05	2 : 0.05	] : 0.05	4 : 0.05	h : 0.03	b : 0.03	e : 0.03	f : 0.01	
c : 0.20	d : 0.12	g : 0.12	i : 0.11	3 : 0.07	= : 0.07	b : 0.05	] : 0.05	h : 0.03	2 : 0.03	4 : 0.03	f : 0.01	e : 0.01	a : 0.01	
c : 0.20	d : 0.16	g : 0.12	i : 0.11	= : 0.07	b : 0.05	] : 0.05	e : 0.05	4 : 0.03	h : 0.03	2 : 0.03	f : 0.01	3 : 0.01	
d : 0.16	e : 0.14	c : 0.12	i : 0.09	] : 0.09	g : 0.09	b : 0.07	3 : 0.05	= : 0.05	2 : 0.03	4 : 0.01	h : 0.01	f : 0.01	
e : 0.22	3 : 0.12	d : 0.11	c : 0.09	g : 0.09	] : 0.05	i : 0.05	b : 0.05	: : 0.03	f : 0.03	= : 0.03	4 : 0.01	2 : 0.01	h : 0.01	a : 0.01	
e : 0.24	3 : 0.12	d : 0.12	c : 0.11	g : 0.09	i : 0.05	4 : 0.03	b : 0.03	f : 0.03	= : 0.03	a : 0.01	: : 0.01	h : 0.01	] : 0.01	6 : 0.01	
e : 0.25	c : 0.11	d : 0.11	3 : 0.09	g : 0.09	] : 0.05	i : 0.05	h : 0.03	b : 0.03	f : 0.03	= : 0.03	4 : 0.01	a : 0.01	: : 0.01	6 : 0.01	
e : 0.24	d : 0.12	c : 0.09	] : 0.09	g : 0.09	: : 0.07	f : 0.05	h : 0.03	i : 0.03	b : 0.03	= : 0.03	4 : 0.01	3 : 0.01	6 : 0.01	2 : 0.01	

#score	742.4069435201446
#seq	54
#width	40
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF623DVN_HLTF_UTR_m1_run1.txt

#BEAR
hhhh####eeeeennnnneeeee22hhhhhhhh]bb	chr9:127998544-127998798(-)$1	254	138	174	12.1481
####ccc!!fffffflllffffffcccgggggggdd	chr15:44063202-44063416(+)$1	214	54	90	10.2983
ddd[bb"""eeeeemmmmeeeee333bb]dddd:::	chr1:165723364-165723613(-)$1	249	84	120	12.9363
33iiiiiiiii]===========22dddddddd[cc	chr7:27832583-27832810(+)$1	227	130	166	9.6896
dd[eeeee"""ddddllldddd333eeeee333ddd	chr5:10264737-10265057(+)$1	320	102	138	12.7303
!!ccc####ddddoooooodddd333ccc22ggggg	chr17:62498186-62498441(-)$1	255	23	59	15.0849
hh[ccc"""ddddllldddd]ccc22hhhhhhhhbb	chr16:8997030-8997358(-)$1	328	235	271	12.6581
iiiiiii"""ddddmmmmdddd22iiiiiiiii:::	chr2:190339931-190340257(+)$1	326	245	281	13.0426
:bb[gggggggcccooooooccc22gggggggbbff	chr21:40571099-40571412(-)$1	313	41	77	10.2741
ggggccc!!eeeeemmmmeeeee22ccceeeeeddd	chr3:180665551-180665818(+)$1	267	118	154	14.2822
c[bb[a!!bbddddllldddd]bb22a]bb]ccc]d	chr5:70806029-70806277(+)$1	248	109	145	12.0867
d"""dddd[eeeeemmmmeeeee]dddd333dddd7	chr11:11964381-11964703(+)$1	322	261	297	11.7052
b[a[bb####ddddmmmmdddd4444bb]a]bbfff	chr17:56080818-56081051(-)$1	233	1	37	14.4259
d[dddd!!a"""bbmmmmbb333a22dddd]ddddb	chr1:68150869-68151163(+)$1	294	156	192	12.3818

#otherMatches

#Seq PSSM
UUAAAAAGCGGGUAAAAAACCUGGGUUAGGGUGUGU	chr9:127998544-127998798(-)$1	254	138	174	12.1481
GGUUCUUUAAAAAGUUACACUUUUAAGCUGAUCUUU	chr15:44063202-44063416(+)$1	214	54	90	10.2983
CUCAUUAAUUCUUUGCAGAGAGACAAGAAGAGAAAC	chr1:165723364-165723613(-)$1	249	84	120	12.9363
AAGAAGAGAAGUUGAAGAUCUGAAACUCCGUCUUCA	chr7:27832583-27832810(+)$1	227	130	166	9.6896
UUAGAAUGAUUUUGAAGAUUGAUGACAUUCGUAAGC	chr5:10264737-10265057(+)$1	320	102	138	12.7303
GUGACCAAAAGUGGUCAAGCACUGGAGUCUGAGGUU	chr17:62498186-62498441(-)$1	255	23	59	15.0849
UGCGUACCGGUCCCGUGGAUAUACCCCACCGUGGCU	chr16:8997030-8997358(-)$1	328	235	271	12.6581
GUUUUUGAUUGUAUGUUGAUAUUCUAAAAACAUCUA	chr2:190339931-190340257(+)$1	326	245	281	13.0426
UGGUCGGAAGCUGCCUCACCGCAAUGCUUCUGCUGU	chr21:40571099-40571412(-)$1	313	41	77	10.2741
UGACCAAGAGCCAUGUGGGUGGUGGUUGGCUAAAGU	chr3:180665551-180665818(+)$1	267	118	154	14.2822
AGGGGGAAGACACCAGAGGUGAUUGAUGCCAUUGAG	chr5:70806029-70806277(+)$1	248	109	145	12.0867
UGGGGAAGGACAUAAAUGUAUGUACUUCAAAAGAAA	chr11:11964381-11964703(+)$1	322	261	297	11.7052
UGGAGCAAUCUCCUUGGAAGGAUUCAGCACGAGUAG	chr17:56080818-56081051(-)$1	233	1	37	14.4259
CGGGCGGGCGAGGGGCGGCCGGAGAGCGCCAGGGCC	chr1:68150869-68151163(+)$1	294	156	192	12.3818

#DB
((((....(((((.....)))))..)))))))).))	chr9:127998544-127998798(-)$1	1	138	174	12.1481
....(((..((((((...))))))))))))))))((	chr15:44063202-44063416(+)$1	1	54	90	10.2983
(((.((...(((((....)))))...)).))))...	chr1:165723364-165723613(-)$1	1	84	120	12.9363
..))))))))).)))))))))))..))))((((.((	chr7:27832583-27832810(+)$1	1	130	166	9.6896
((.(((((...((((...))))...)))))...)))	chr5:10264737-10265057(+)$1	1	102	138	12.7303
..(((....((((......))))...)))..)))))	chr17:62498186-62498441(-)$1	1	23	59	15.0849
((.(((...((((...)))).)))..))))))))))	chr16:8997030-8997358(-)$1	1	235	271	12.6581
(((((((...((((....))))..)))))))))...	chr2:190339931-190340257(+)$1	1	245	281	13.0426
.((.((((((((((......)))..)))))))))((	chr21:40571099-40571412(-)$1	1	41	77	10.2741
))))(((..(((((....)))))..)))((((((((	chr3:180665551-180665818(+)$1	1	118	154	14.2822
(.((.(..((((((...)))).))..).)).))).)	chr5:70806029-70806277(+)$1	1	109	145	12.0867
(...((((.(((((....))))).))))...)))).	chr11:11964381-11964703(+)$1	1	261	297	11.7052
(.(.((....((((....))))....)).).))(((	chr17:56080818-56081051(-)$1	1	1	37	14.4259
(.((((..(...((....))...)..)))).)))))	chr1:68150869-68151163(+)$1	1	156	192	12.3818

#PSSM
d : 0.28	h : 0.14	# : 0.07	3 : 0.07	! : 0.07	i : 0.07	: : 0.07	g : 0.07	c : 0.07	b : 0.07	
[ : 0.21	h : 0.14	d : 0.14	# : 0.07	3 : 0.07	! : 0.07	i : 0.07	b : 0.07	g : 0.07	" : 0.07	
d : 0.14	i : 0.14	[ : 0.14	b : 0.14	h : 0.07	# : 0.07	c : 0.07	g : 0.07	" : 0.07	a : 0.07	
[ : 0.21	i : 0.14	c : 0.14	h : 0.07	# : 0.07	e : 0.07	g : 0.07	b : 0.07	" : 0.07	d : 0.07	
c : 0.28	b : 0.14	i : 0.14	d : 0.14	# : 0.07	e : 0.07	g : 0.07	[ : 0.07	
c : 0.21	# : 0.14	b : 0.14	i : 0.14	d : 0.14	e : 0.07	g : 0.07	a : 0.07	
# : 0.21	c : 0.14	" : 0.14	i : 0.14	! : 0.14	e : 0.07	g : 0.07	d : 0.07	
! : 0.28	# : 0.21	" : 0.21	i : 0.07	e : 0.07	g : 0.07	d : 0.07	
" : 0.28	! : 0.14	# : 0.14	e : 0.07	i : 0.07	g : 0.07	b : 0.07	[ : 0.07	a : 0.07	
e : 0.28	" : 0.21	d : 0.14	f : 0.07	i : 0.07	g : 0.07	b : 0.07	# : 0.07	
d : 0.35	e : 0.28	" : 0.14	f : 0.07	i : 0.07	g : 0.07	
d : 0.42	e : 0.28	f : 0.07	] : 0.07	c : 0.07	" : 0.07	
d : 0.42	e : 0.28	f : 0.07	= : 0.07	c : 0.07	b : 0.07	
d : 0.28	e : 0.21	n : 0.07	f : 0.07	= : 0.07	o : 0.07	l : 0.07	c : 0.07	b : 0.07	
m : 0.42	o : 0.14	l : 0.14	n : 0.07	f : 0.07	= : 0.07	d : 0.07	
m : 0.42	l : 0.28	o : 0.14	n : 0.07	= : 0.07	
m : 0.42	l : 0.21	o : 0.14	n : 0.07	= : 0.07	d : 0.07	
m : 0.42	l : 0.14	o : 0.14	d : 0.14	n : 0.07	= : 0.07	
d : 0.35	e : 0.28	o : 0.14	f : 0.07	= : 0.07	b : 0.07	
d : 0.42	e : 0.28	f : 0.07	= : 0.07	o : 0.07	b : 0.07	
d : 0.35	e : 0.28	f : 0.07	= : 0.07	] : 0.07	c : 0.07	3 : 0.07	
e : 0.28	d : 0.28	c : 0.14	f : 0.07	= : 0.07	] : 0.07	3 : 0.07	
e : 0.28	3 : 0.14	c : 0.14	f : 0.07	= : 0.07	d : 0.07	2 : 0.07	b : 0.07	4 : 0.07	
2 : 0.35	3 : 0.21	f : 0.07	c : 0.07	b : 0.07	] : 0.07	4 : 0.07	a : 0.07	
2 : 0.49	3 : 0.21	c : 0.07	i : 0.07	d : 0.07	4 : 0.07	
2 : 0.21	c : 0.14	3 : 0.14	d : 0.14	h : 0.07	e : 0.07	i : 0.07	g : 0.07	4 : 0.07	
c : 0.21	d : 0.21	h : 0.14	b : 0.14	e : 0.07	i : 0.07	g : 0.07	a : 0.07	
d : 0.21	h : 0.14	g : 0.14	b : 0.14	c : 0.14	e : 0.07	i : 0.07	] : 0.07	
h : 0.14	g : 0.14	] : 0.14	d : 0.14	e : 0.14	c : 0.07	i : 0.07	b : 0.07	3 : 0.07	
d : 0.21	h : 0.14	g : 0.14	e : 0.14	2 : 0.07	i : 0.07	b : 0.07	3 : 0.07	a : 0.07	
] : 0.21	h : 0.14	g : 0.14	d : 0.14	3 : 0.14	2 : 0.07	i : 0.07	e : 0.07	
d : 0.28	g : 0.21	h : 0.14	3 : 0.07	i : 0.07	e : 0.07	c : 0.07	b : 0.07	
d : 0.28	h : 0.14	g : 0.14	b : 0.14	3 : 0.07	i : 0.07	e : 0.07	c : 0.07	
d : 0.28	g : 0.14	: : 0.14	] : 0.07	[ : 0.07	h : 0.07	b : 0.07	c : 0.07	f : 0.07	
d : 0.35	b : 0.14	: : 0.14	f : 0.14	c : 0.07	g : 0.07	] : 0.07	
d : 0.28	b : 0.21	: : 0.14	f : 0.14	c : 0.07	g : 0.07	7 : 0.07	

#score	173.7446431269072
#seq	14
#width	36
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF624RZR_DROSHA_UTR_m1_run1.txt

#BEAR
ccc!!ccc[bboooooobbccc22ccc	chr14:24566114-24566358(+)$1	244	211	238	13.1170
c####ffffffooooooffffff22cc	chr19:46522267-46522513(+)$1	246	164	191	11.0772
ddiiiiiiiiiooooooiiiiiiiiiC	chr3:49058276-49058574(-)$1	298	84	111	13.7616
dd[bb!!ddddooooooddddbbdddd	chr12:125270543-125270859(-)$1	316	222	249	11.4100
eeeee[a[cccooooooccc]a]eeee	chr8:25315648-25315940(-)$1	292	16	43	13.5994
::ggggggg[aooooooa]gggggggd	chr1:205418896-205419120(-)$1	224	12	39	12.5291
dddd!!a[cccooooooccc]a]dddd	chr6:43028068-43028421(+)$1	353	313	340	13.8713
ddddd!!ddddoooooodddd]dddd]	chr7:150935657-150935886(+)$1	229	149	176	11.9917
[dddd[a[cccooooooccc]a333dd	chr14:105259204-105259495(-)$1	291	74	101	14.0769
bb[hhhhhhhhoooooohhhhhhhhbb	chr18:20798956-20799213(+)$1	257	219	246	12.9557
hhhhhhhh[bboooooobb]hhhhhhh	chr11:18034099-18034448(-)$1	349	5	32	13.1873
ee!!iiiiiiiiimmmmiiiiiiiii3	chr12:58217991-58218476(-)$1	485	245	272	9.5943
dd!!gggggggooooooggggggg333	chr19:18547995-18548280(-)$1	285	191	218	14.6010
hhhhhhh[cccooooooccc]hhhhhh	chr6:167365916-167366141(-)$1	225	110	137	14.2088
hhhhhh[bb[aooooooa]bb]hhhhh	chr17:28444025-28444251(+)$1	226	193	220	12.5512
hhhhhhhh[bboooooobbhhhhhhhh	chr17:57918318-57918540(+)$1	222	40	67	13.2777
e"""a[ccc[aooooooa]ccc]a444	chr19:56652951-56653258(+)$1	307	15	42	13.8862
!a[gggggggaooooooa]ggggggga	chr19:41770831-41771102(+)$1	271	52	79	14.7063
hhhhhhhh[bboooooobbhhhhhhhh	chr17:57918344-57918564(+)$1	220	14	41	13.2777
ddddgggggggooooooggggggg>>>	chr17:74380172-74380436(+)$1	264	199	226	13.1856
hhhhhhhh[bboooooobbhhhhhhhh	chr17:57918269-57918501(+)$1	232	89	116	13.2777
ddddiiiiiiiiillliiiiiiiii22	chr17:36925639-36925933(-)$1	294	249	276	9.5207
"bb[a[eeeeeooooooeeeeea]bb3	chr17:7477026-7477285(+)$1	259	68	95	12.0294
$$$$ccc[cccooooooccc]ccc22e	chr2:97535510-97535793(-)$1	283	73	100	12.9879
eee!!aeeeeeooooooeeeee]a22e	chr8:8243809-8244096(-)$1	287	95	122	12.7149
dd[bb!!ddddoooooodddd22bb]d	chr17:7477342-7477621(+)$1	279	249	276	11.5711
eeee"""ddddoooooodddd]eeeee	chr9:97848101-97848370(+)$1	269	106	133	11.5362
::ggggggg[aooooooa]gggggggd	chr1:205418920-205419162(-)$1	242	54	81	12.5291
ffffff!!cccooooooccc4444fff	chr4:38869897-38870142(+)$1	245	67	94	11.7341
eeee!!eeeeeooooooeeeee22eee	chr17:38077849-38078136(-)$1	287	200	227	12.2338
[a[ccc[bb[aooooooabb]ccc]a]	chr1:2122081-2122392(-)$1	311	15	42	13.3708
[iiiiiiiii[ammmmaiiiiiiiiib	chr2:153574597-153574864(+)$1	267	193	220	9.9387
c!!hhhhhhhhoooooohhhhhhhh22	chr2:191513917-191514189(+)$1	272	46	73	13.7577
ffdddd!!cccooooooccc4444ddd	chr19:50168009-50168263(-)$1	254	130	157	12.4074
ddddddd[cccoooooocccdddd333	chr15:34678935-34679214(-)$1	279	136	163	12.9272
:iiiiiiiiiooooooiiiiiiiiiee	chr17:57917885-57918138(+)$1	253	0	27	12.3370
bb[hhhhhhhhoooooohhhhhhhhbb	chr18:20799080-20799321(+)$1	241	95	122	12.9557
hhhhhhhh[bboooooobbhhhhhhhh	chr17:57918152-57918391(+)$1	239	206	233	13.2777
[eeeeeccc[aooooooa]ccc]eeee	chr16:29985280-29985588(+)$1	308	118	145	13.1668
[cccgggggggooooooggggggg22c	chr19:58991078-58991358(-)$1	280	43	70	14.1355
!bb[ddddcccooooooccc333dddd	chr16:87738792-87739095(-)$1	303	254	281	12.6555
:hhhhhhhh[aooooooa]hhhhhhhh	chr2:242447550-242447833(-)$1	283	85	112	13.0433
ggggg[eeeeeooooooeeeeeggggg	chr9:136627530-136627802(-)$1	272	149	176	13.2207
dd!!gggggggooooooggggggg333	chr19:18547939-18548195(-)$1	256	106	133	14.6010
!!dddd[ddddoooooodddd]ddddd	chr17:38080316-38080576(-)$1	260	77	104	11.8186
ccc[ccc!!bboooooobb22ccc]cc	chr9:80646056-80646331(-)$1	275	205	232	13.0990
ddd[ccc!!bboooooobb22ccc]dd	chr10:105154020-105154252(-)$1	232	150	177	12.8077
e"""a[eeeeeooooooeeeeea]eee	chr7:150777508-150777851(-)$1	343	290	317	12.5784
cc[dddd[cccooooooccc]ddddcc	chr4:38870001-38870259(+)$1	258	175	202	13.2811
dd[bb[eeeeeooooooeeeee]bb]d	chr6:128327053-128327395(-)$1	342	64	91	12.1649
gggg!!eeeeeooooooeeeee]gggg	chr7:150066650-150066963(+)$1	313	66	93	13.3249
iiidddd[cccooooooccc]dddd::	chr20:42142928-42143284(+)$1	356	155	182	11.2927
hhhhhhhh!!aooooooa22hhhhhhh	chr7:100027475-100027783(+)$1	308	172	199	13.3777
fff[ccc[cccooooooccc]ccc444	chr14:103574564-103574856(+)$1	292	179	206	13.6447
[cccbbeeeeeooooooeeeee333bb	chr7:99690876-99691114(-)$1	238	79	106	11.9641
[===========lll===========]	chr20:57467327-57467612(+)$1	285	192	219	10.1762

#otherMatches

#Seq PSSM
GCUCCCCAAGUACAAUAACUGGUAAGC	chr14:24566114-24566358(+)$1	244	211	238	13.1170
GAGAAGGAGACAGUGGGGUUUUUGGCC	chr19:46522267-46522513(+)$1	246	164	191	11.0772
CCGAGGUGGACGCGCGGGUUUACUUCC	chr3:49058276-49058574(-)$1	298	84	111	13.7616
UGAGACCUGGUACUUGCAucauccauu	chr12:125270543-125270859(-)$1	316	222	249	11.4100
GGACAGAGUGCGUGCGUGUGGUGUGUC	chr8:25315648-25315940(-)$1	292	16	43	13.5994
GAGCUUCUCGGGGUGAGUGGAGGAGUG	chr1:205418896-205419120(-)$1	224	12	39	12.5291
AGGAAGUGGGAACACAGUCUGAGUCCU	chr6:43028068-43028421(+)$1	353	313	340	13.8713
UGCCUCAGCCCCAGGAAGGGCAAGGCA	chr7:150935657-150935886(+)$1	229	149	176	11.9917
GUCCAACGGCUGGGGGAGGUGGGAAUG	chr14:105259204-105259495(-)$1	291	74	101	14.0769
uguguguggagccuacUCUCCGUGCCA	chr18:20798956-20799213(+)$1	257	219	246	12.9557
GAGCUGCUGGCCGCGGCGUGGGCAGUU	chr11:18034099-18034448(-)$1	349	5	32	13.1873
CCAGGUAGCCCAGGAGGCUGGGCUGCA	chr12:58217991-58218476(-)$1	485	245	272	9.5943
CCGGAGGUCUCAGGGGAGGGGCCUGGG	chr19:18547995-18548280(-)$1	285	191	218	14.6010
ACCAUGAGUGGAAAAAACUAAUUAUGG	chr6:167365916-167366141(-)$1	225	110	137	14.2088
AGGGGCAGUGUGAAGAGAGACAGUUCC	chr17:28444025-28444251(+)$1	226	193	220	12.5512
UCUUAGUGUGAUUUUUUUCCAUUGGGA	chr17:57918318-57918540(+)$1	222	40	67	13.2777
UGAACGCGGGAGAGAAAUGCUGAGGGA	chr19:56652951-56653258(+)$1	307	15	42	13.8862
ACACUCAGUGCAGGGGGGACACUGGGG	chr19:41770831-41771102(+)$1	271	52	79	14.7063
UCUUAGUGUGAUUUUUUUCCAUUGGGA	chr17:57918344-57918564(+)$1	220	14	41	13.2777
GCGCUGCGCGGUCGCUUUCGCGCGCCC	chr17:74380172-74380436(+)$1	264	199	226	13.1856
UCUUAGUGUGAUUUUUUUCCAUUGGGA	chr17:57918269-57918501(+)$1	232	89	116	13.2777
AGGUUAAAAAGGGGUUCCCUUUUUGGU	chr17:36925639-36925933(-)$1	294	249	276	9.5207
GCAACGCGAGGGGGGGGCUUCGGCUGG	chr17:7477026-7477285(+)$1	259	68	95	12.0294
gagggcuggcgggcgagcgcgggcagg	chr2:97535510-97535793(-)$1	283	73	100	12.9879
cggagggggcggagccgCGCUCACAGC	chr8:8243809-8244096(-)$1	287	95	122	12.7149
GCCCCGAUGGGAUGGAGCCCGAAGGCG	chr17:7477342-7477621(+)$1	279	249	276	11.5711
GCAGUCCAGGCCUUCGCGUCUCCUGCG	chr9:97848101-97848370(+)$1	269	106	133	11.5362
GAGCUUCUCGGGGUGAGUGGAGGAGUG	chr1:205418920-205419162(-)$1	242	54	81	12.5291
GGGAGCUCAGGCCUUGACCUCCCCGCU	chr4:38869897-38870142(+)$1	245	67	94	11.7341
GGAGGGAGGCUGCUGUGGGUUUAACUC	chr17:38077849-38078136(-)$1	287	200	227	12.2338
GCAGUGGCCACACAGACGGGGCACAGG	chr1:2122081-2122392(-)$1	311	15	42	13.3708
GCGCUCCCGUUGGUGACGCGGGGGUGG	chr2:153574597-153574864(+)$1	267	193	220	9.9387
GGAGCGGGGGCGUCCCGGCUCCUGCAG	chr2:191513917-191514189(+)$1	272	46	73	13.7577
UCGCGCCCAGGAAAUGCCCUAUACGCG	chr19:50168009-50168263(-)$1	254	130	157	12.4074
UGGGCGGAGGUGCAGUGACCCCGCAGG	chr15:34678935-34679214(-)$1	279	136	163	12.9272
UUUUAUUCUGUGUAUUUAGAAUGAAGU	chr17:57917885-57918138(+)$1	253	0	27	12.3370
uguguguggagccuacUCUCCGUGCCA	chr18:20799080-20799321(+)$1	241	95	122	12.9557
UCUUAGUGUGAUUUUUUUCCAUUGGGA	chr17:57918152-57918391(+)$1	239	206	233	13.2777
CCCGGCGUGAGAGGGGCCGUGCGGCCG	chr16:29985280-29985588(+)$1	308	118	145	13.1668
GGCUGGUGGGGCGGUAACCCUGCCCGG	chr19:58991078-58991358(-)$1	280	43	70	14.1355
GAGCGGCCGGCACGAAAGCCCAGGGCC	chr16:87738792-87739095(-)$1	303	254	281	12.6555
agcugccuuggaagaggugggggcggc	chr2:242447550-242447833(-)$1	283	85	112	13.0433
UUGCGACCUGCGGCCCAGCAGGCGCGG	chr9:136627530-136627802(-)$1	272	149	176	13.2207
CCGGAGGUCUCAGGGGAGGGGCCUGGG	chr19:18547939-18548195(-)$1	256	106	133	14.6010
ACCUGUGCUGCUUGUUUGCAGAACAGC	chr17:38080316-38080576(-)$1	260	77	104	11.8186
GCUGCCUGAGCGAGGAGGCCAAGGAAG	chr9:80646056-80646331(-)$1	275	205	232	13.0990
CGGCUCGUCUGUGUUGCCAAUCGACUC	chr10:105154020-105154252(-)$1	232	150	177	12.8077
uagagagacgaagccacuuguccaagg	chr7:150777508-150777851(-)$1	343	290	317	12.5784
UCCAGGCACCUCAGACCAGGCGCCUGA	chr4:38870001-38870259(+)$1	258	175	202	13.2811
AAAAACAUGAauuuuauuuuauuuuau	chr6:128327053-128327395(-)$1	342	64	91	12.1649
GGAGCUCAGAGCCUCACUUCUGUUUUC	chr7:150066650-150066963(+)$1	313	66	93	13.3249
GGUGCUUGGGGGCGUAGCCUGGAGUGA	chr20:42142928-42143284(+)$1	356	155	182	11.2927
GAGAUGGCGGCGGAGAAGGAGCCGUUU	chr7:100027475-100027783(+)$1	308	172	199	13.3777
CACAUGGUUGGACCAAGCCAUCCAGUG	chr14:103574564-103574856(+)$1	292	179	206	13.6447
CUUCCCCUUAGGCACGUCUGAGAAUGG	chr7:99690876-99691114(-)$1	238	79	106	11.9641
GGGGGGGCUGGUGACAUCAGCCCCUCG	chr20:57467327-57467612(+)$1	285	192	219	10.1762

#DB
(((..(((.((......)))))..)))	chr14:24566114-24566358(+)$1	1	211	238	13.1170
(....((((((......))))))..))	chr19:46522267-46522513(+)$1	1	164	191	11.0772
))(((((((((......))))))))))	chr3:49058276-49058574(-)$1	1	84	111	13.7616
((.((..((((......))))))))))	chr12:125270543-125270859(-)$1	1	222	249	11.4100
(((((.(.(((......))).).))))	chr8:25315648-25315940(-)$1	1	16	43	13.5994
..(((((((.(......).)))))))(	chr1:205418896-205419120(-)$1	1	12	39	12.5291
((((..(.(((......))).).))))	chr6:43028068-43028421(+)$1	1	313	340	13.8713
(((((..((((......)))).)))).	chr7:150935657-150935886(+)$1	1	149	176	11.9917
.((((.(.(((......))).)...))	chr14:105259204-105259495(-)$1	1	74	101	14.0769
((.((((((((......))))))))))	chr18:20798956-20799213(+)$1	1	219	246	12.9557
((((((((.((......)).)))))))	chr11:18034099-18034448(-)$1	1	5	32	13.1873
((..(((((((((....))))))))).	chr12:58217991-58218476(-)$1	1	245	272	9.5943
((..(((((((......)))))))...	chr19:18547995-18548280(-)$1	1	191	218	14.6010
(((((((.(((......))).))))))	chr6:167365916-167366141(-)$1	1	110	137	14.2088
((((((.((.(......).)).)))))	chr17:28444025-28444251(+)$1	1	193	220	12.5512
((((((((.((......))))))))))	chr17:57918318-57918540(+)$1	1	40	67	13.2777
(...(.(((.(......).))).)...	chr19:56652951-56653258(+)$1	1	15	42	13.8862
.(.((((((((......).))))))))	chr19:41770831-41771102(+)$1	1	52	79	14.7063
((((((((.((......))))))))))	chr17:57918344-57918564(+)$1	1	14	41	13.2777
(((((((((((......)))))))...	chr17:74380172-74380436(+)$1	1	199	226	13.1856
((((((((.((......))))))))))	chr17:57918269-57918501(+)$1	1	89	116	13.2777
(((((((((((((...)))))))))..	chr17:36925639-36925933(-)$1	1	249	276	9.5207
.((.(.(((((......)))))).)).	chr17:7477026-7477285(+)$1	1	68	95	12.0294
....(((.(((......))).)))..)	chr2:97535510-97535793(-)$1	1	73	100	12.9879
(((..((((((......))))).)..)	chr8:8243809-8244096(-)$1	1	95	122	12.7149
((.((..((((......))))..)).)	chr17:7477342-7477621(+)$1	1	249	276	11.5711
((((...((((......)))).)))))	chr9:97848101-97848370(+)$1	1	106	133	11.5362
..(((((((.(......).)))))))(	chr1:205418920-205419162(-)$1	1	54	81	12.5291
((((((..(((......)))....)))	chr4:38869897-38870142(+)$1	1	67	94	11.7341
((((..(((((......)))))..)))	chr17:38077849-38078136(-)$1	1	200	227	12.2338
.(.(((.((.(......))).))).).	chr1:2122081-2122392(-)$1	1	15	42	13.3708
.(((((((((.(....)))))))))))	chr2:153574597-153574864(+)$1	1	193	220	9.9387
(..((((((((......))))))))..	chr2:191513917-191514189(+)$1	1	46	73	13.7577
((((((..(((......)))....)))	chr19:50168009-50168263(-)$1	1	130	157	12.4074
(((((((.(((......)))))))...	chr15:34678935-34679214(-)$1	1	136	163	12.9272
.(((((((((......)))))))))((	chr17:57917885-57918138(+)$1	1	0	27	12.3370
((.((((((((......))))))))))	chr18:20799080-20799321(+)$1	1	95	122	12.9557
((((((((.((......))))))))))	chr17:57918152-57918391(+)$1	1	206	233	13.2777
.((((((((.(......).))).))))	chr16:29985280-29985588(+)$1	1	118	145	13.1668
.((((((((((......)))))))..)	chr19:58991078-58991358(-)$1	1	43	70	14.1355
.((.(((((((......)))...))))	chr16:87738792-87739095(-)$1	1	254	281	12.6555
.((((((((.(......).))))))))	chr2:242447550-242447833(-)$1	1	85	112	13.0433
(((((.(((((......))))))))))	chr9:136627530-136627802(-)$1	1	149	176	13.2207
((..(((((((......)))))))...	chr19:18547939-18548195(-)$1	1	106	133	14.6010
..((((.((((......)))).)))))	chr17:38080316-38080576(-)$1	1	77	104	11.8186
(((.(((..((......))..))).))	chr9:80646056-80646331(-)$1	1	205	232	13.0990
(((.(((..((......))..))).))	chr10:105154020-105154252(-)$1	1	150	177	12.8077
(...(.(((((......)))))).)))	chr7:150777508-150777851(-)$1	1	290	317	12.5784
((.((((.(((......))).))))))	chr4:38870001-38870259(+)$1	1	175	202	13.2811
((.((.(((((......))))).)).)	chr6:128327053-128327395(-)$1	1	64	91	12.1649
((((..(((((......))))).))))	chr7:150066650-150066963(+)$1	1	66	93	13.3249
)))((((.(((......))).))))..	chr20:42142928-42143284(+)$1	1	155	182	11.2927
((((((((..(......)..)))))))	chr7:100027475-100027783(+)$1	1	172	199	13.3777
(((.(((.(((......))).)))...	chr14:103574564-103574856(+)$1	1	179	206	13.6447
.((((((((((......)))))...))	chr7:99690876-99691114(-)$1	1	79	106	11.9641
.(((((((((((...))))))))))).	chr20:57467327-57467612(+)$1	1	192	219	10.1762

#PSSM
d : 0.21	h : 0.14	e : 0.12	[ : 0.12	c : 0.08	: : 0.07	! : 0.05	f : 0.05	b : 0.03	g : 0.03	" : 0.01	$ : 0.01	i : 0.01	
d : 0.23	h : 0.16	e : 0.10	c : 0.08	b : 0.07	f : 0.05	i : 0.05	: : 0.03	" : 0.03	a : 0.03	! : 0.03	g : 0.03	# : 0.01	$ : 0.01	= : 0.01	
d : 0.16	h : 0.16	[ : 0.14	e : 0.08	c : 0.07	i : 0.07	g : 0.07	! : 0.07	" : 0.03	b : 0.03	f : 0.03	# : 0.01	$ : 0.01	= : 0.01	
h : 0.21	d : 0.17	! : 0.08	g : 0.08	[ : 0.08	e : 0.07	i : 0.05	b : 0.05	c : 0.05	" : 0.03	# : 0.01	$ : 0.01	f : 0.01	= : 0.01	
h : 0.21	g : 0.14	d : 0.14	! : 0.08	i : 0.08	c : 0.08	b : 0.07	a : 0.05	e : 0.03	# : 0.01	" : 0.01	f : 0.01	= : 0.01	
h : 0.21	[ : 0.12	g : 0.12	c : 0.10	! : 0.10	d : 0.10	i : 0.08	f : 0.03	a : 0.01	" : 0.01	e : 0.01	b : 0.01	= : 0.01	
h : 0.19	e : 0.14	c : 0.12	g : 0.12	i : 0.08	! : 0.08	d : 0.07	a : 0.05	[ : 0.05	f : 0.01	" : 0.01	= : 0.01	
h : 0.17	[ : 0.16	e : 0.14	g : 0.12	d : 0.10	i : 0.08	! : 0.07	c : 0.05	b : 0.03	f : 0.01	= : 0.01	
c : 0.24	e : 0.14	g : 0.12	[ : 0.10	i : 0.08	d : 0.08	h : 0.07	! : 0.05	b : 0.03	f : 0.01	= : 0.01	
c : 0.21	b : 0.14	e : 0.14	[ : 0.12	i : 0.08	d : 0.08	g : 0.08	h : 0.05	f : 0.01	! : 0.01	= : 0.01	
c : 0.21	a : 0.16	b : 0.14	e : 0.14	d : 0.08	g : 0.07	i : 0.05	h : 0.05	f : 0.01	[ : 0.01	o : 0.01	= : 0.01	
o : 0.92	i : 0.03	a : 0.01	= : 0.01	
o : 0.92	i : 0.03	m : 0.01	l : 0.01	
o : 0.92	m : 0.03	l : 0.03	
o : 0.92	m : 0.03	l : 0.03	
o : 0.92	m : 0.03	l : 0.01	= : 0.01	
o : 0.91	i : 0.03	m : 0.01	a : 0.01	= : 0.01	
c : 0.21	a : 0.16	b : 0.14	e : 0.14	i : 0.08	d : 0.08	g : 0.07	h : 0.05	f : 0.01	= : 0.01	
c : 0.21	b : 0.16	e : 0.14	] : 0.12	i : 0.08	d : 0.08	g : 0.07	h : 0.05	f : 0.01	2 : 0.01	= : 0.01	
c : 0.26	h : 0.14	e : 0.14	g : 0.12	i : 0.08	d : 0.08	2 : 0.05	b : 0.03	f : 0.01	] : 0.01	= : 0.01	
h : 0.17	] : 0.16	e : 0.14	g : 0.12	d : 0.10	i : 0.08	c : 0.05	4 : 0.03	2 : 0.03	f : 0.01	b : 0.01	3 : 0.01	= : 0.01	
h : 0.19	c : 0.14	e : 0.14	g : 0.12	i : 0.08	] : 0.07	a : 0.05	d : 0.05	4 : 0.03	f : 0.01	b : 0.01	2 : 0.01	3 : 0.01	= : 0.01	
h : 0.21	g : 0.14	] : 0.12	i : 0.08	d : 0.08	c : 0.08	2 : 0.05	3 : 0.05	a : 0.03	4 : 0.03	f : 0.01	b : 0.01	e : 0.01	= : 0.01	
h : 0.21	g : 0.16	d : 0.14	i : 0.08	c : 0.08	2 : 0.05	e : 0.05	3 : 0.03	a : 0.03	] : 0.03	b : 0.03	4 : 0.03	= : 0.01	
h : 0.21	d : 0.14	i : 0.08	e : 0.08	g : 0.08	3 : 0.08	2 : 0.07	b : 0.05	] : 0.05	4 : 0.03	c : 0.01	> : 0.01	f : 0.01	= : 0.01	
h : 0.16	d : 0.14	e : 0.10	g : 0.08	2 : 0.08	c : 0.07	b : 0.07	i : 0.05	3 : 0.05	4 : 0.03	] : 0.03	> : 0.01	f : 0.01	a : 0.01	: : 0.01	= : 0.01	
d : 0.19	h : 0.16	e : 0.14	c : 0.08	3 : 0.08	b : 0.07	] : 0.05	4 : 0.03	2 : 0.03	g : 0.03	C : 0.01	a : 0.01	> : 0.01	f : 0.01	: : 0.01	

#score	712.328575658116
#seq	56
#width	27
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF736YDH_APOBEC3C_transcript_m1_run1.txt

#BEAR
$$ccc"""gggggggddddmmmmdddd333ggggggg3	chr17:26900067-26900345(-)$1	278	109	147	13.1861
ee!!eeeee!!cccacccooooooccc]a]ccceeeee	chr17:4848940-4849218(-)$1	278	150	188	14.2624
ffffff!!ffffff!!bboooooobb22ffffff4444	chr20:5095621-5095872(-)$1	251	196	234	13.1247
==================oooooo==============	chr19:47774850-47775137(+)$1	287	115	153	16.5802
fffff####dddd!!cccmmmmccc]dddd4444ffff	chr20:35869809-35870062(+)$1	253	17	55	11.4949
:ggggggg!!ffffff[aooooooaffffffggggggg	chr8:101715246-101715455(-)$1	209	151	189	11.8419
e"""eeeee!!eeeeeooooooeeeee333eeeee333	chr19:7708545-7708818(+)$1	273	15	53	13.3971
ggggg####dddd[bboooooobbdddd22ggggggg:	chr1:173836067-173836275(-)$1	208	100	138	13.0001
ggggg####dddd[bboooooobbdddd22ggggggg:	chr1:173836075-173836281(-)$1	206	106	144	13.0001
:==========bb[ddddoooooodddd333bb333==	chr16:29708525-29708917(+)$1	392	3	41	15.3839
""ccc####ccc[a[ccc[bblllbb]cccaccc4444	chr20:60710048-60710352(+)$1	304	113	151	13.1738
ggggg"""dddd[eeeeeooooooeeeee22ddddggg	chr9:96326730-96326982(+)$1	252	33	71	15.1019
ii[bb[ffffff!!ddddoooooodddd22ffffff]b	chr11:65192215-65192495(+)$1	280	85	123	14.0074
====!!ffffff[eeeeeooooooeeeeeffffff===	chr11:5274337-5274596(-)$1	259	207	245	13.3430
cc:dddd[dddd"""cccbboooooobb333ccc22dd	chr16:1749161-1749419(+)$1	258	152	190	11.5740
eeccc"""eeeee[ccccccmmmmccc]ccc]eeeee4	chr7:99751475-99751733(+)$1	258	99	137	12.2158
aeeeee!!bbbb[eeeeeooooooeeeee]bb]bb22e	chr11:842313-842584(-)$1	271	23	61	12.1128
eee####eeeee####cccmmmmccc4444eeeee333	chr7:123182011-123182262(-)$1	251	73	111	13.9404
[dddd"""dddd[ddddoooooodddddddd]dddd]c	chr15:44063537-44063788(+)$1	251	151	189	13.3600
dd!!ccc[ccc!!eeeeeooooooeeeeeccc]cccdd	chr12:6978434-6978655(+)$1	221	110	148	13.3222
f==========="""cccpppppppccc22========	chr14:92583741-92584052(-)$1	311	256	294	12.4829
========dddd"""ccc[cccmmmmccc22ccc333d	chr12:54744391-54744651(+)$1	260	147	185	11.8453
gggggg[ccc[a[a[a[arrrrrrrrra]a]a]a22cc	chr2:97560073-97560314(-)$1	241	58	96	12.6640
#eeeee"""eeeeecccqqqqqqqqccc]eeeee333e	chr17:56168019-56168259(+)$1	240	96	134	11.1935
eeee!!ccc[dddd[cccooooooccc]dddd]ccc44	chr16:88876377-88876625(-)$1	248	102	140	14.8427
""ccc!!ffffff"""cccnnnnnccc333ffffff]c	chr3:156260710-156261033(-)$1	323	47	85	13.5591
''eeeee!!a[ccc[cccooooooccc]ccc]a22eee	chr17:34171862-34172132(+)$1	270	99	137	13.1454
fffff!!dddd[cccbboooooobb]ccc4444dddd2	chr19:34887209-34887436(+)$1	227	1	39	12.4230
iiiiiii[dddd"""cccqqqqqqqqccc333dddd]i	chr6:75949916-75950174(-)$1	258	39	77	12.1733
gggggg[eeeee!!ddddoooooodddd22eeeeeggg	chr12:57031899-57032149(-)$1	250	198	236	15.5808
!!ccc"""dddd"""cccooooooccc333dddd333c	chr10:58117429-58117722(-)$1	293	98	136	19.7653
###bb"""bbdddd!!aooooooa22dddd]bb4444b	chr17:46698538-46698811(-)$1	273	90	128	13.4781
e[ccc!!eeeee####cccmmmmccc4444eeeee22c	chr1:150237735-150238019(-)$1	284	58	96	13.7333
i[ccc!!dddd"""cccpppppppccc333dddd22cc	chr12:109039216-109039477(-)$1	261	156	194	11.9471
ccc"""eeeee"""ddddoooooodddd333eeeee55	chr9:127623676-127623926(-)$1	250	28	66	14.8716
iiiiiiiiiccc[eeeeeooooooeeeee]ccc88888	chr22:42017892-42018187(+)$1	295	221	259	13.4912
gggccc[ccc!!bb[cccoooooocccbb22ccc]ccc	chr22:21998371-21998667(+)$1	296	239	277	14.7693
c"""a!!eeeee!!cccxxxxxxxxxxxxxxxccc22e	chr18:9954455-9954761(+)$1	306	68	106	11.4785
hhhhh$$$$$dddd!!aaooooooa]a22dddd4444h	chr9:131018604-131018860(-)$1	256	202	240	14.1539
gg!!iiiiiiiii!!cccooooooccc]iiiiiiiii2	chrX:153063683-153063891(+)$1	208	6	44	16.4774
ccc[bb"""ccc[bbcccooooooccc]bb]ccc333b	chr17:49239201-49239467(+)$1	266	31	69	15.8100
b[ccc[eeeee####ddddmmmmdddd22eeeeeccc]	chr16:88876439-88876656(-)$1	217	154	192	11.5186
ccc[=============nnnnn=============22c	chr19:54704627-54704857(+)$1	230	153	191	12.7473
!!ccc"""eeeee!!bbqqqqqqqqbb22eeeeeccc3	chr5:1815863-1816080(+)$1	217	23	61	11.4250
""ccc==========oooooo==========]ccc333	chr1:1717342-1717586(-)$1	244	5	43	14.4617
ffffff[ccc[gggggggooooooggggggg22cccff	chr19:10406317-10406604(+)$1	287	101	139	12.7462
gggggg[ccc[iiiiiiiiillliiiiiiiii]ccc]g	chr17:40463776-40464024(+)$1	248	142	180	12.1090
!ffffff"""ccc[ddddnnnnndddd333ccc]ffff	chrX:22012647-22012925(+)$1	278	29	67	11.9365
====="""eeeee!!aooooooa22eeeee88888888	chr1:150192895-150193150(-)$1	255	162	200	11.7481
eeee[bb!!ccc"""cccooooooccc22ccc22bb]e	chr12:104658952-104659206(+)$1	254	146	184	15.1517
f[a[==========[ddddmmmmdddd333========	chr3:13357654-13357916(-)$1	262	186	224	13.8039
gggg$$$$$ccc"""cccooooooccc333ccc>>>>>	chr15:78575607-78575964(-)$1	357	151	189	17.6545

#otherMatches

#Seq PSSM
CUUCUUGCCUGCCCUGUCUCCUGGGAUCAGAGGGUAGU	chr17:26900067-26900345(-)$1	278	109	147	13.1861
GGCUGGGGGCCAGGGCUGGAUGGACAGACACCUCCCCC	chr17:4848940-4849218(-)$1	278	150	188	14.2624
CAAAAGGGUCUUGACUCUAAAUGCAGUUUUAAGAAUUG	chr20:5095621-5095872(-)$1	251	196	234	13.1247
gugugugugugugugugugugugugcgcgcgcgcgcgc	chr19:47774850-47775137(+)$1	287	115	153	16.5802
AAAAAAGUCCAGAUUGUAGUUAUACUUUUGCUUGUUUU	chr20:35869809-35870062(+)$1	253	17	55	11.4949
GUACAAAAAUUUAAAGCAUUCCUUUCUUUAAUUUUGUA	chr8:101715246-101715455(-)$1	209	151	189	11.8419
UGGAGAGGUGGGCCCUGGGAGAGGGGCGGAGCCUUGGA	chr19:7708545-7708818(+)$1	273	15	53	13.3971
UGCUGGGUGCAGAUGCAGUGUGGCUCUGGAUAGCACCU	chr1:173836067-173836275(-)$1	208	100	138	13.0001
UGCUGGGUGCAGAUGCAGUGUGGCUCUGGAUAGCACCU	chr1:173836075-173836281(-)$1	206	106	144	13.0001
CCCACGGCCACCGUGCUGAAGGCCCAGUUCCCGAGUGU	chr16:29708525-29708917(+)$1	392	3	41	15.3839
UCUACAUUUGUUGCAUGAGUCGAUGGGUCAGAACUUUA	chr20:60710048-60710352(+)$1	304	113	151	13.1738
ACAGCGCUUGCCGCAGAGAAGCUGCUCUGGAGGCAGCU	chr9:96326730-96326982(+)$1	252	33	71	15.1019
AUACUUUCUUGGCAUUCUAGUAAGAGGACCCUGAGGUG	chr11:65192215-65192495(+)$1	280	85	123	14.0074
UUUUUAAAUAUAUGAGCCACAAAGGGUUUUAUGUUGAG	chr11:5274337-5274596(-)$1	259	207	245	13.3430
CCAGCUGAUUGGAUGUCUAGGAAUGACUGAAAGAAACC	chr16:1749161-1749419(+)$1	258	152	190	11.5740
CAUUGAUGUCUGAGCCUGCCGGAGGGCGAGGGUCGGAG	chr7:99751475-99751733(+)$1	258	99	137	12.2158
GGUUCUUCGCGUGCGGCCGGGCCGGGCCGGGCAGUCUG	chr11:842313-842584(-)$1	271	23	61	12.1128
GGAAAUGGCCAAUAUAAUUAUUAAGUGACUUUGGUGUG	chr7:123182011-123182262(-)$1	251	73	111	13.9404
AAUUUUUUUUGUACAUUUGGAACAGUGACAAUAAAUGA	chr15:44063537-44063788(+)$1	251	151	189	13.3600
GUCAUCGCAGGUAUCUCUGGAGAAAGGGACCUUUGAGC	chr12:6978434-6978655(+)$1	221	110	148	13.3222
AUAUUCUUUUUGAUAUGUGCCAAAAAUAAACAGAAGGG	chr14:92583741-92584052(-)$1	311	256	294	12.4829
GCAGGGGAAGCACCCUCUUUCUUUCUAGACUGGAUUAU	chr12:54744391-54744651(+)$1	260	147	185	11.8453
CUGUGUGUAUgugggugggugggugaaugggugggugu	chr2:97560073-97560314(-)$1	241	58	96	12.6640
UUGGGGUGGGGUGGUCAUUGCCGUUUGAGCUGCUGAUU	chr17:56168019-56168259(+)$1	240	96	134	11.1935
CCAGGACAGAGGGUGGUCGUCGUGGAUGAUCUGCUGGC	chr16:88876377-88876625(-)$1	248	102	140	14.8427
GUCAGCUUCACCCCCUGGCUUUGUGUCUAUGGGUGGCC	chr3:156260710-156261033(-)$1	323	47	85	13.5591
GAGUGGUGGCGGCUAUGGAGGAGACCGAGGUGGGGGCU	chr17:34171862-34172132(+)$1	270	99	137	13.1454
CAUGGAGUCCAAUGGGAAAUACAUCACCAAAUCUGGAA	chr19:34887209-34887436(+)$1	227	1	39	12.4230
UAUUAUUGUCUUUUUUUUUUUUUUUUAAAUCUAGGAGG	chr6:75949916-75950174(-)$1	258	39	77	12.1733
GAUUCUCUUGGUUCUGACAACAUAGUCAACACUGAAGG	chr12:57031899-57032149(-)$1	250	198	236	15.5808
GGUGGUUAUAUGUGGGAAGAUAAUUUUAUUCAUGGAUC	chr10:58117429-58117722(-)$1	293	98	136	19.7653
UUUGCUUUGUCGGUGGCUGUCGUGAAAUUGUGCUUGUG	chr17:46698538-46698811(-)$1	273	90	128	13.4781
CGUAGGGAAGGAGGGGAGAUUUUUUUGUAGUUUUUAAU	chr1:150237735-150238019(-)$1	284	58	96	13.7333
AACAAUAAUGGCAAUGACUUAUAUUCAAAUCUGUAUUU	chr12:109039216-109039477(-)$1	261	156	194	11.9471
GCCACGCAGGUGAAGGGGAUAUGGCCCCGCGGCCUGGC	chr9:127623676-127623926(-)$1	250	28	66	14.8716
CCAUUCGGUGUGUGGAAGAAAGACCUUCCCUGCCUAUC	chr22:42017892-42018187(+)$1	295	221	259	13.4912
GGAUGACCAGGAGGUGCCAGCCCAGGCCCAGUUGAUCA	chr22:21998371-21998667(+)$1	296	239	277	14.7693
GAGUCUUGUAAAUGUUAUUUUAAUAAUCCCUUUAAAUU	chr18:9954455-9954761(+)$1	306	68	106	11.4785
CUUUACUCUUACAGUAGCAAAUAAGACCCCUGUCUAAU	chr9:131018604-131018860(-)$1	256	202	240	14.1539
GCAUGUCUUGGUUCCCCUGGCGGAAGGUGACCAGGGCU	chrX:153063683-153063891(+)$1	208	6	44	16.4774
ACAUCCAUUUCCCCUCCUUCCCAUGGGCAGAGGACCAG	chr17:49239201-49239467(+)$1	266	31	69	15.8100
GUGGAUGAUCUGCUGGCCACUGGUGGUAAGGGUCUCCC	chr16:88876439-88876656(-)$1	217	154	192	11.5186
CUCUAGGGUUUGGGUUGGAUGGUGGCCCGGGCCUUCCG	chr19:54704627-54704857(+)$1	230	153	191	12.7473
CAUACAUUUUCAAUGCUUAAUAUCUAGAUUUGAAGUAG	chr5:1815863-1816080(+)$1	217	23	61	11.4250
CAAUUAUUUGUGUAUGAAACAAUGUACAAAUCAAUGUU	chr1:1717342-1717586(-)$1	244	5	43	14.4617
UCAAAGGUGCCUUAGCGGGUGGGGCUGUUGAUCGCACU	chr19:10406317-10406604(+)$1	287	101	139	12.7462
UUUGUGUAAACAGUGUUUUGGAAUAAAAUAUUUUUUUC	chr17:40463776-40464024(+)$1	248	142	180	12.1090
UGGUUAGACAGCACAGCGAAGACUGCUAAAUGCACUGA	chrX:22012647-22012925(+)$1	278	29	67	11.9365
UUCUAAGACCAGAUUCUCUAAUGUUUCUGGGUGUGCAA	chr1:150192895-150193150(-)$1	255	162	200	11.7481
GGCACGCUACGAGAGUACAAGGUAGUGGGUCGCUGCCU	chr12:104658952-104659206(+)$1	254	146	184	15.1517
GUGUGAUCGUUGCUGAGAUUUCUGUCUGAUGGUGAUGA	chr3:13357654-13357916(-)$1	262	186	224	13.8039
AGAUGACCAGGAAAUUCACAUCUAUGAUUGUCCAAUUU	chr15:78575607-78575964(-)$1	357	151	189	17.6545

#DB
..(((...(((((((((((....))))...))))))).	chr17:26900067-26900345(-)$1	1	109	147	13.1861
((..(((((..(((((((......))).).))))))))	chr17:4848940-4849218(-)$1	1	150	188	14.2624
((((((..((((((..((......))..))))))....	chr20:5095621-5095872(-)$1	1	196	234	13.1247
((((((((((((((((((......))))))))))))))	chr19:47774850-47775137(+)$1	1	115	153	16.5802
(((((....((((..(((....))).))))....))))	chr20:35869809-35870062(+)$1	1	17	55	11.4949
.(((((((..((((((.(......))))))))))))))	chr8:101715246-101715455(-)$1	1	151	189	11.8419
(...(((((..(((((......)))))...)))))...	chr19:7708545-7708818(+)$1	1	15	53	13.3971
(((((....((((.((......))))))..))))))).	chr1:173836067-173836275(-)$1	1	100	138	13.0001
(((((....((((.((......))))))..))))))).	chr1:173836075-173836281(-)$1	1	106	144	13.0001
.((((((((((((.((((......))))...))...))	chr16:29708525-29708917(+)$1	1	3	41	15.3839
..(((....(((.(.(((.((...)).)))))))....	chr20:60710048-60710352(+)$1	1	113	151	13.1738
(((((...((((.(((((......)))))..)))))))	chr9:96326730-96326982(+)$1	1	33	71	15.1019
((.((.((((((..((((......))))..)))))).)	chr11:65192215-65192495(+)$1	1	85	123	14.0074
((((..((((((.(((((......))))))))))))))	chr11:5274337-5274596(-)$1	1	207	245	13.3430
)).((((.((((...(((((......))...)))..))	chr16:1749161-1749419(+)$1	1	152	190	11.5740
(((((...(((((.((((((....))).))).))))).	chr7:99751475-99751733(+)$1	1	99	137	12.2158
)(((((..((((.(((((......))))).)).))..)	chr11:842313-842584(-)$1	1	23	61	12.1128
(((....(((((....(((....)))....)))))...	chr7:123182011-123182262(-)$1	1	73	111	13.9404
.((((...((((.((((......)))))))).)))).)	chr15:44063537-44063788(+)$1	1	151	189	13.3600
((..(((.(((..(((((......)))))))).)))))	chr12:6978434-6978655(+)$1	1	110	148	13.3222
((((((((((((...(((.......)))..))))))))	chr14:92583741-92584052(-)$1	1	256	294	12.4829
((((((((((((...(((.(((....)))..)))...)	chr12:54744391-54744651(+)$1	1	147	185	11.8453
((((((.(((.(.(.(.(.........).).).)..))	chr2:97560073-97560314(-)$1	1	58	96	12.6640
.(((((...((((((((........))).)))))...)	chr17:56168019-56168259(+)$1	1	96	134	11.1935
((((..(((.((((.(((......))).)))).)))..	chr16:88876377-88876625(-)$1	1	102	140	14.8427
..(((..((((((...(((.....)))...)))))).)	chr3:156260710-156261033(-)$1	1	47	85	13.5591
..(((((..(.(((.(((......))).))).)..)))	chr17:34171862-34172132(+)$1	1	99	137	13.1454
(((((..((((.(((((......)).)))....)))).	chr19:34887209-34887436(+)$1	1	1	39	12.4230
(((((((.((((...(((........)))...)))).)	chr6:75949916-75950174(-)$1	1	39	77	12.1733
((((((.(((((..((((......))))..))))))))	chr12:57031899-57032149(-)$1	1	198	236	15.5808
..(((...((((...(((......)))...))))...)	chr10:58117429-58117722(-)$1	1	98	136	19.7653
...((...((((((..(......)..)))).))....)	chr17:46698538-46698811(-)$1	1	90	128	13.4781
(.(((..(((((....(((....)))....)))))..)	chr1:150237735-150238019(-)$1	1	58	96	13.7333
(.(((..((((...(((.......)))...))))..))	chr12:109039216-109039477(-)$1	1	156	194	11.9471
(((...(((((...((((......))))...)))))..	chr9:127623676-127623926(-)$1	1	28	66	14.8716
((((((((((((.(((((......))))).))).....	chr22:42017892-42018187(+)$1	1	221	259	13.4912
((((((.(((..((.(((......)))))..))).)))	chr22:21998371-21998667(+)$1	1	239	277	14.7693
(...(..(((((..(((...............)))..)	chr18:9954455-9954761(+)$1	1	68	106	11.4785
(((((.....((((..((......).)..))))....)	chr9:131018604-131018860(-)$1	1	202	240	14.1539
((..(((((((((..(((......))).))))))))).	chrX:153063683-153063891(+)$1	1	6	44	16.4774
(((.((...(((.(((((......))).)).)))...)	chr17:49239201-49239467(+)$1	1	31	69	15.8100
(.(((.(((((....((((....))))..)))))))).	chr16:88876439-88876656(-)$1	1	154	192	11.5186
(((.(((((((((((((.....)))))))))))))..)	chr19:54704627-54704857(+)$1	1	153	191	12.7473
..(((...(((((..((........))..)))))))).	chr5:1815863-1816080(+)$1	1	23	61	11.4250
..(((((((((((((......)))))))))).)))...	chr1:1717342-1717586(-)$1	1	5	43	14.4617
((((((.(((.(((((((......)))))))..)))))	chr19:10406317-10406604(+)$1	1	101	139	12.7462
((((((.(((.(((((((((...))))))))).))).)	chr17:40463776-40464024(+)$1	1	142	180	12.1090
.((((((...(((.((((.....))))...))).))))	chrX:22012647-22012925(+)$1	1	29	67	11.9365
(((((...(((((..(......)..)))))........	chr1:150192895-150193150(-)$1	1	162	200	11.7481
((((.((..(((...(((......)))..)))..)).)	chr12:104658952-104659206(+)$1	1	146	184	15.1517
(.(.((((((((((.((((....))))...))))))))	chr3:13357654-13357916(-)$1	1	186	224	13.8039
((((.....(((...(((......)))...))).....	chr15:78575607-78575964(-)$1	1	151	189	17.6545

#PSSM
g : 0.17	e : 0.13	f : 0.11	c : 0.09	= : 0.07	i : 0.07	" : 0.05	! : 0.05	: : 0.03	# : 0.03	$ : 0.01	a : 0.01	[ : 0.01	d : 0.01	' : 0.01	h : 0.01	b : 0.01	
g : 0.19	e : 0.13	= : 0.11	f : 0.09	" : 0.09	c : 0.07	[ : 0.07	i : 0.05	d : 0.03	! : 0.03	$ : 0.01	' : 0.01	# : 0.01	h : 0.01	
c : 0.24	g : 0.17	= : 0.11	e : 0.11	f : 0.09	! : 0.05	" : 0.03	i : 0.03	[ : 0.01	: : 0.01	d : 0.01	# : 0.01	h : 0.01	a : 0.01	
c : 0.21	g : 0.15	= : 0.11	f : 0.09	e : 0.09	! : 0.05	" : 0.05	[ : 0.05	b : 0.03	d : 0.03	i : 0.03	# : 0.01	h : 0.01	
c : 0.23	= : 0.13	g : 0.13	e : 0.09	f : 0.09	b : 0.05	i : 0.05	! : 0.03	d : 0.03	# : 0.01	" : 0.01	a : 0.01	h : 0.01	[ : 0.01	$ : 0.01	
" : 0.17	= : 0.13	! : 0.13	e : 0.09	# : 0.09	g : 0.07	f : 0.05	i : 0.05	[ : 0.03	c : 0.03	$ : 0.03	b : 0.03	d : 0.01	
" : 0.19	! : 0.13	= : 0.13	e : 0.09	# : 0.09	[ : 0.09	f : 0.05	i : 0.05	c : 0.03	$ : 0.03	g : 0.01	d : 0.01	b : 0.01	
" : 0.21	e : 0.15	= : 0.13	c : 0.09	! : 0.07	# : 0.07	f : 0.05	[ : 0.05	d : 0.03	i : 0.03	$ : 0.03	g : 0.01	
e : 0.21	d : 0.15	= : 0.11	c : 0.11	f : 0.07	# : 0.07	! : 0.05	" : 0.05	b : 0.03	i : 0.03	$ : 0.03	g : 0.01	
d : 0.21	c : 0.19	e : 0.19	= : 0.11	f : 0.07	! : 0.05	b : 0.03	g : 0.01	[ : 0.01	a : 0.01	$ : 0.01	i : 0.01	" : 0.01	
d : 0.26	e : 0.19	c : 0.13	= : 0.11	f : 0.09	[ : 0.07	! : 0.05	g : 0.01	b : 0.01	i : 0.01	
d : 0.23	e : 0.17	c : 0.15	f : 0.09	= : 0.09	g : 0.03	b : 0.03	! : 0.03	" : 0.03	i : 0.03	a : 0.01	[ : 0.01	# : 0.01	
" : 0.17	[ : 0.15	d : 0.11	e : 0.09	c : 0.07	= : 0.07	! : 0.07	f : 0.05	# : 0.05	g : 0.03	b : 0.03	i : 0.03	
" : 0.19	! : 0.13	e : 0.13	[ : 0.09	= : 0.07	d : 0.07	c : 0.05	# : 0.05	g : 0.03	f : 0.03	a : 0.03	b : 0.03	i : 0.01	
" : 0.15	! : 0.13	e : 0.11	d : 0.11	[ : 0.11	c : 0.09	= : 0.05	b : 0.05	# : 0.05	g : 0.03	a : 0.01	f : 0.01	i : 0.01	
c : 0.36	d : 0.17	e : 0.11	b : 0.07	! : 0.05	= : 0.03	# : 0.03	a : 0.03	f : 0.01	" : 0.01	o : 0.01	g : 0.01	i : 0.01	
c : 0.42	d : 0.17	o : 0.09	e : 0.09	b : 0.05	= : 0.03	[ : 0.03	a : 0.03	g : 0.01	i : 0.01	
c : 0.36	d : 0.15	o : 0.15	e : 0.09	a : 0.05	q : 0.03	b : 0.01	= : 0.01	p : 0.01	x : 0.01	n : 0.01	g : 0.01	i : 0.01	
o : 0.59	c : 0.07	d : 0.05	q : 0.05	[ : 0.03	p : 0.03	n : 0.03	m : 0.01	b : 0.01	r : 0.01	x : 0.01	i : 0.01	
o : 0.59	m : 0.11	q : 0.05	n : 0.05	b : 0.03	c : 0.03	p : 0.03	r : 0.01	x : 0.01	i : 0.01	
o : 0.61	m : 0.13	q : 0.05	n : 0.05	p : 0.03	b : 0.01	c : 0.01	r : 0.01	x : 0.01	l : 0.01	
o : 0.59	m : 0.13	q : 0.05	n : 0.05	l : 0.03	p : 0.03	c : 0.01	r : 0.01	x : 0.01	= : 0.01	
o : 0.51	m : 0.13	q : 0.05	b : 0.03	l : 0.03	p : 0.03	n : 0.03	= : 0.03	c : 0.01	e : 0.01	r : 0.01	x : 0.01	a : 0.01	
o : 0.46	d : 0.09	c : 0.05	b : 0.05	q : 0.05	m : 0.03	p : 0.03	= : 0.03	e : 0.01	l : 0.01	r : 0.01	n : 0.01	a : 0.01	x : 0.01	i : 0.01	2 : 0.01	
c : 0.28	d : 0.21	e : 0.11	b : 0.05	= : 0.05	q : 0.05	a : 0.03	2 : 0.03	o : 0.01	p : 0.01	m : 0.01	r : 0.01	x : 0.01	g : 0.01	i : 0.01	
c : 0.30	d : 0.21	e : 0.13	b : 0.05	= : 0.05	] : 0.05	f : 0.01	o : 0.01	m : 0.01	r : 0.01	q : 0.01	2 : 0.01	x : 0.01	g : 0.01	i : 0.01	
c : 0.32	d : 0.24	e : 0.13	= : 0.05	b : 0.03	4 : 0.03	2 : 0.01	f : 0.01	] : 0.01	r : 0.01	x : 0.01	a : 0.01	g : 0.01	i : 0.01	
d : 0.17	3 : 0.15	] : 0.11	c : 0.11	e : 0.11	2 : 0.09	= : 0.05	b : 0.03	4 : 0.03	f : 0.01	a : 0.01	x : 0.01	g : 0.01	i : 0.01	
3 : 0.21	2 : 0.17	c : 0.11	e : 0.11	d : 0.07	= : 0.05	f : 0.03	4 : 0.03	] : 0.03	b : 0.03	i : 0.03	a : 0.01	x : 0.01	g : 0.01	
3 : 0.23	2 : 0.15	d : 0.09	c : 0.09	e : 0.07	] : 0.05	f : 0.05	= : 0.05	4 : 0.05	i : 0.03	a : 0.01	x : 0.01	b : 0.01	g : 0.01	
c : 0.15	e : 0.13	f : 0.09	= : 0.09	d : 0.09	g : 0.07	3 : 0.07	2 : 0.05	] : 0.05	4 : 0.03	i : 0.03	a : 0.01	b : 0.01	x : 0.01	8 : 0.01	
c : 0.21	e : 0.15	d : 0.09	g : 0.07	f : 0.07	= : 0.07	] : 0.07	b : 0.05	4 : 0.03	i : 0.03	a : 0.01	3 : 0.01	x : 0.01	2 : 0.01	8 : 0.01	
c : 0.21	e : 0.17	d : 0.11	] : 0.09	g : 0.07	f : 0.07	= : 0.07	4 : 0.03	b : 0.03	2 : 0.03	a : 0.01	i : 0.01	8 : 0.01	
c : 0.21	e : 0.19	d : 0.11	g : 0.07	f : 0.07	= : 0.07	4 : 0.05	2 : 0.03	8 : 0.03	3 : 0.01	b : 0.01	a : 0.01	i : 0.01	] : 0.01	> : 0.01	
c : 0.15	e : 0.13	f : 0.09	3 : 0.09	g : 0.07	4 : 0.07	= : 0.07	d : 0.07	2 : 0.07	b : 0.03	8 : 0.03	] : 0.01	i : 0.01	> : 0.01	
3 : 0.15	2 : 0.13	c : 0.13	g : 0.11	e : 0.07	4 : 0.07	= : 0.07	f : 0.07	d : 0.05	8 : 0.03	i : 0.01	b : 0.01	> : 0.01	
3 : 0.13	g : 0.11	] : 0.11	4 : 0.09	= : 0.09	c : 0.09	2 : 0.07	e : 0.05	f : 0.05	d : 0.05	8 : 0.03	5 : 0.01	i : 0.01	> : 0.01	
c : 0.15	e : 0.11	3 : 0.09	= : 0.09	4 : 0.07	g : 0.07	f : 0.05	b : 0.05	d : 0.05	: : 0.03	2 : 0.03	8 : 0.03	i : 0.01	5 : 0.01	h : 0.01	] : 0.01	> : 0.01	

#score	702.6132703600002
#seq	52
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_transcript_m1_run2.txt

#BEAR
F==========="""ddddllldddd]===========	chr19:2250383-2250617(+)$1	234	44	82	17.3159
::==========####bbnnnnnbb22==========:	chr17:80054871-80055127(-)$1	256	27	65	14.8443
b[eeeee[ggggggg[cccmmmmccc]gggggggeeee	chr19:1415361-1415683(+)$1	322	168	206	12.8113
gffffff[ccc!!ccccccmmmmccc]cccccc]ffff	chr19:15513034-15513288(-)$1	254	39	77	12.8409
ffff[ggggggg[ddddooooooddddggggggg]fff	chr17:34151015-34151306(+)$1	291	22	60	13.4530
dd[===========!!cccmmmmccc]===========	chr8:142425791-142426052(+)$1	261	129	167	18.0452
ddggggggg!!ffffffooooooffffff333gggggg	chr2:97559889-97560144(-)$1	255	113	151	14.4566
ggggbb==========!!ammmma22==========]b	chr6:42750823-42751104(+)$1	281	62	100	15.5137
bb!!===========arrrrrrrrra]===========	chr5:1330825-1331156(-)$1	331	145	183	15.8802
eee!!ccc[eeeeecccooooooccc]eeeee]ccc22	chr7:1893066-1893319(-)$1	253	72	110	13.2608
iiiiiiiibb!!bb[cccmmmmccc]bb]bb]iiiiii	chr12:123873634-123873942(+)$1	308	6	44	14.4312
ebb!!ccc!!ggggggg[aooooooa]ggggggg]ccc	chrX:152958321-152958591(+)$1	270	47	85	14.1985
e!!ccc[ccc[gggggggnnnnngggggggccc]ccc3	chr9:100745972-100746217(+)$1	245	72	110	14.7146
hhhhhh"""eeeee[cccnnnnnccc]eeeee333hhh	chr22:49925215-49925496(-)$1	281	135	173	13.5860
gg!!ccc!!ccc[a[cccmmmmccca]cccccc22ggg	chr22:50879387-50879627(+)$1	240	191	229	14.2329
ee####dddda[ccc[annnnnaccc]a]dddd333ee	chr16:30078597-30078876(+)$1	279	203	241	12.9165
ddggggggg!!ffffffooooooffffff333gggggg	chr2:97559944-97560187(-)$1	243	156	194	14.4566
========"""bb[ddddmmmmdddd]bb=========	chr4:53428-53695(+)$1	267	22	60	15.3006
iiiiiiiii"""ffffffooooooffffffiiiiiiii	chr5:134240832-134241107(+)$1	275	176	214	16.1882
===========[bb[bboooooobb]bb22========	chr6:134274586-134274865(+)$1	279	173	211	16.9447
c[ffffff!!eeeeecccnnnnnccc]eeeee]fffff	chr6:29595630-29595898(-)$1	268	156	194	12.8524
fffff=============nnnnn=============::	chr11:82868995-82869240(+)$1	245	33	71	15.5897
gggggggccc"""a[bbbbnnnnnbb]bb]a4444ccc	chr12:69633389-69633671(+)$1	282	72	110	13.4796
cc===========!!annnnna22===========]cc	chr1:178995241-178995591(+)$1	350	1	39	15.7592
dddccc!!ccc[ccc[cccmmmmccc]cccccc22ccc	chr1:211433453-211433776(+)$1	323	209	247	13.0545
===========[bb[ccclllccc22bb]=========	chr10:79685723-79686055(-)$1	332	217	255	16.9776
e[ccc[ccc"""bb[cccnnnnnccc]bb333ccc]cc	chr7:99755806-99756075(-)$1	269	60	98	16.0518
[iiiiiiiii"""bb[bbmmmmbbbb]iiiiiiiiicc	chr5:90676140-90676420(-)$1	280	94	132	14.8531
""ccc[eeeee"""ddddoooooodddd]eeeee]ccc	chr16:88520229-88520493(+)$1	264	108	146	11.9484
hhhhggggggg[ffffffnnnnnffffff]ggggggg]	chr5:134734474-134734758(-)$1	284	83	121	14.0453
fff[ccc"""dddd[cccnnnnncccddddccc]ffff	chr2:132268861-132269084(+)$1	223	65	103	13.2488
f[eeeeeggggggg"""ccclllccc333ggggggg]e	chr2:68478852-68479151(-)$1	299	87	125	13.6900
[============a[ccca!!dddd[a!!=========	chr9:139560088-139560350(+)$1	262	133	171	14.4629
[bb!!ccc####ccc[bbnnnnnbb22ccc333ccc22	chr1:2160042-2160342(+)$1	300	145	183	13.8244
[bb[a[a[==========lll==========]a]a]bb	chr1:22379669-22379925(+)$1	256	53	91	15.0293
ea==========[a!!aooooooa22a==========]	chr16:70472652-70472936(-)$1	284	131	169	18.4129
eeiiiiiiiii[eeeeeooooooeeeee333iiiiiii	chr16:21512869-21513175(-)$1	306	238	276	15.9831
===========[bb[cccnnnnncccbb==========	chr1:167190918-167191244(+)$1	326	224	262	19.0917
f===========[a[cccnnnnnccc]a]=========	chr11:78128121-78128387(-)$1	266	28	66	20.1993
eeee"""ggggggg[cccnnnnncccggggggg333ee	chr21:45284977-45285225(+)$1	248	30	68	15.7879
===:ggggggg"""ddddnnnnndddd4444ggggggg	chr21:46912926-46913178(+)$1	252	34	72	14.3619
==========="""cccccclllccc4444ccc4444=	chr19:798049-798287(+)$1	238	147	185	16.6758
iiiiiiii[a!!ccc[bbnnnnnbb]ccc22a]iiiii	chr7:5462134-5462432(-)$1	298	146	184	15.9913
=======[bb[ggggggglllggggggg]bb]======	chr11:64073164-64073444(+)$1	280	162	200	14.8167
gggggg!!ccc####ddddllldddd4444ccc]gggg	chr7:65338726-65339042(+)$1	316	6	44	14.1559
==========!!eeeeeooooooeeeee]=========	chr21:35446117-35446525(+)$1	408	116	154	17.3473
======[a[bb[ffffffnnnnnffffff]bba=====	chr14:102228168-102228494(+)$1	326	245	283	14.8955
gggggggiiiiiiiii[aooooooaiiiiiiiii6666	chr19:10914271-10914581(+)$1	310	32	70	14.2318
iiiii!!bb[a!!eeeeellleeeee]abbiiiiiiii	chr3:128216782-128217040(+)$1	258	49	87	13.6742
iiiiiiii"""ccc[ddddlllddddccc333iiiiii	chr2:85766512-85766736(+)$1	224	120	158	15.6726
eeee!!ccc[ccc[a[cccmmmmccc]a]ccc]ccc22	chr18:9914605-9914926(+)$1	321	87	125	13.1886
============[a[cccnnnnnccc22a]========	chr17:73823576-73823859(-)$1	283	81	119	19.4828
gg####iiiiiiiii[cccmmmmccc]iiiiiiiii22	chr19:4066001-4066252(-)$1	251	157	195	15.8835
dd[ccc[ffffff"""aooooooa333ffffff22ccc	chr6:15248571-15248828(+)$1	257	2	40	12.8633

#otherMatches

#Seq PSSM
GGGCCUGGCCCUGAGGUCACUGUGACGAGGGCUGGGCU	chr19:2250383-2250617(+)$1	234	44	82	17.3159
CCCGCGCAGGUGAAGGGUGCCAGGCAACACCUGCGUGU	chr17:80054871-80055127(-)$1	256	27	65	14.8443
GUGCCGGGCCCUGCUGGCAGGGAUGUGGGCGGGGCUGG	chr19:1415361-1415683(+)$1	322	168	206	12.8113
UCUUAGAGCUGCCGGUGCCUCUUGGUGGCCCAGGUUUA	chr19:15513034-15513288(-)$1	254	39	77	12.8409
GAAAUGAGAGUGGUUAUUUGUGUGUAAUAUUUUCUUUU	chr17:34151015-34151306(+)$1	291	22	60	13.4530
AGGCUGGGCCCUUGGAGCUGCCGAGUGCAGGGGCCUGG	chr8:142425791-142426052(+)$1	261	129	167	18.0452
GUGGGGGAGCUGGGUAUGUUUGGGUACCCCUCCUCUcc	chr2:97559889-97560144(-)$1	255	113	151	14.4566
UCCGAGCCCGCGGCGGCGGCGCGCACCUGCCGCGGGAC	chr6:42750823-42751104(+)$1	281	62	100	15.5137
GCCAGCAGACAGUGGCUGUGGCCUUGACCACUGUUUGU	chr5:1330825-1331156(-)$1	331	145	183	15.8802
GGUGAUCAGUCUGCUGUGGUCAGGCAGGCAGGGUGGGG	chr7:1893066-1893319(-)$1	253	72	110	13.2608
ccgccggcccuuccccggggcgccgcggcggcgcUGGU	chr12:123873634-123873942(+)$1	308	6	44	14.4312
GAGCCAUGGCUCGGAGGACAAUGGGGACCUCUGAACAU	chrX:152958321-152958591(+)$1	270	47	85	14.1985
GGAGCGAGCGCGCGAGGAUUAACUCUUUgccgcccgcg	chr9:100745972-100746217(+)$1	245	72	110	14.7146
CCAGCUCGGAGGCUGUGCGGCUGGCAGGGCCUGAAAGU	chr22:49925215-49925496(-)$1	281	135	173	13.5860
UCCCCCAUGGCCCCGUGACCCUUCAGAGGCUGGCUGAG	chr22:50879387-50879627(+)$1	240	191	229	14.2329
GCACCGAGAACACCGAGGAGAACCGGCGCUUCUACCGC	chr16:30078597-30078876(+)$1	279	203	241	12.9165
GUGGGGGAGCUGGGUAUGUUUGGGUACCCCUCCUCUcc	chr2:97559944-97560187(-)$1	243	156	194	14.4566
GCGGCGGGACCGAGUCUGCGAACGGAGUCCCCGCUGCC	chr4:53428-53695(+)$1	267	22	60	15.3006
ACCCGGCGUGGGCCGAGCCUUGGAGCUCGGGCGUCGGG	chr5:134240832-134241107(+)$1	275	176	214	16.1882
UUCUGAAGAGGACCGGGCGAUAUUUGGGGAUCUCUUUA	chr6:134274586-134274865(+)$1	279	173	211	16.9447
CGCGGGGGCCGUAGGAAGCCAACCUUCCCUGCUUCUCC	chr6:29595630-29595898(-)$1	268	156	194	12.8524
UCCCUGGGAAGUGGGAGAGUGGGUCUCCCAUUUUCCCC	chr11:82868995-82869240(+)$1	245	33	71	15.5897
GGAUGUCGGCGAAGAGUUCAACCAGGUACGUGAGAGCC	chr12:69633389-69633671(+)$1	282	72	110	13.4796
gcgggggcgggggagggcgcgcgacccccgcccccggc	chr1:178995241-178995591(+)$1	350	1	39	15.7592
GACACUGGGCGUGUGGGCAGAUGUGUGCACUGCAAGGU	chr1:211433453-211433776(+)$1	323	209	247	13.0545
GGAGGCGGCGGUGCGCGGAUCCCGAAGUCCCGCCGCCU	chr10:79685723-79686055(-)$1	332	217	255	16.9776
CCAUCUGUACUUGGGGGAGACUGUCCGUUUUCUGCUGG	chr7:99755806-99756075(-)$1	269	60	98	16.0518
AGGGGGGGGCUUCGACGGGUAUCCUCUGCCCCCUCCCC	chr5:90676140-90676420(-)$1	280	94	132	14.8531
UGGGGGCGCGGCCCGGGCAGCUCGGCCCCUCGCGGCCU	chr16:88520229-88520493(+)$1	264	108	146	11.9484
CCCGGCCUGGCGCGCACCGGUGUGGUGCGGGCCGGGCU	chr5:134734474-134734758(-)$1	284	83	121	14.0453
GGGCCCUUCCAAGGAGCUAGAGAGGCCUUUAGGCCCCA	chr2:132268861-132269084(+)$1	223	65	103	13.2488
GCGGGgcccccgcgcccgcccccggccucugcggggcg	chr2:68478852-68479151(-)$1	299	87	125	13.6900
gggcucgggcggcaguggcggcggcgcgugcgcgcccc	chr9:139560088-139560350(+)$1	262	133	171	14.4629
ggggagccggagcgCACCAUGGAGGCGGCGGCAGGCGG	chr1:2160042-2160342(+)$1	300	145	183	13.8244
GCCGGGCGCCGCCGCGGACAUUUUGCGGCGGGGGUGGG	chr1:22379669-22379925(+)$1	256	53	91	15.0293
CCCCGGCUGCCCAGACCUCCCCUGCGCGGGCAGCUGGC	chr16:70472652-70472936(-)$1	284	131	169	18.4129
CCGCGGGGAGGCGAGGCCUAAGUGCCUCUCCCCUCCCU	chr16:21512869-21513175(-)$1	306	238	276	15.9831
ccggccggcggUCGGCAGCCCCUUUGCGUUGUCGGCCG	chr1:167190918-167191244(+)$1	326	224	262	19.0917
GGGGCUGGGGCUCCGCGGCAGCCCCGAGCAGCUUCAGC	chr11:78128121-78128387(-)$1	266	28	66	20.1993
UGUGGGAUCGCCGCGCACAggaaguggcggcggcggcg	chr21:45284977-45285225(+)$1	248	30	68	15.7879
GUCGGGCUGUCGAGGCAGGCAUAUUGCGGGGGGCAGCU	chr21:46912926-46913178(+)$1	252	34	72	14.3619
GGGGCCUCUCCAGGGACCCCCGCGGGCGCCGUCAUGGG	chr19:798049-798287(+)$1	238	147	185	16.6758
CUGCUCGGGGGGCUGGGCGCGGAGUGCAGGGCGCCGGG	chr7:5462134-5462432(-)$1	298	146	184	15.9913
AGUCCGGGCCACGGUUGGGACCCAGUCGAGGGUCGGAC	chr11:64073164-64073444(+)$1	280	162	200	14.8167
CGGCCUGAGCCCAGGCCgcggggcggagguggcggggc	chr7:65338726-65339042(+)$1	316	6	44	14.1559
cgugcgcgcgggaggcgggggugugccugcgcgugugc	chr21:35446117-35446525(+)$1	408	116	154	17.3473
GGCUUCUCUCGGCCUCAUGCCCGGUGGGGGCGGGGAGC	chr14:102228168-102228494(+)$1	326	245	283	14.8955
ACUUACCCCAGCUGUUACUAUACUGAGCAGCUGGUGAC	chr19:10914271-10914581(+)$1	310	32	70	14.2318
CUGCCCAAGCGCAGGCGCAGAGCGCCACCUGGCGGCGG	chr3:128216782-128217040(+)$1	258	49	87	13.6742
CGCGCGCUUUCCUCGUGGCGCCGCCAGGGCCUGGCGCG	chr2:85766512-85766736(+)$1	224	120	158	15.6726
CCAGAGGCCGACGGCGUGCUUCGGCGGGGCGUGGGCGG	chr18:9914605-9914926(+)$1	321	87	125	13.1886
CCCCUGCCCGCCUCUCAGAAAAGCUGCUGUGGUGGGCA	chr17:73823576-73823859(-)$1	283	81	119	19.4828
CCCUCCGCCGUUUGCAGCCGGCAGGUGGCAAGCGGCUU	chr19:4066001-4066252(-)$1	251	157	195	15.8835
cgggccggcuugcaggcgggcaggagggcggguggggc	chr6:15248571-15248828(+)$1	257	2	40	12.8633

#DB
((((((((((((...((((...)))).)))))))))))	chr19:2250383-2250617(+)$1	1	44	82	17.3159
..((((((((((....((.....))..)))))))))).	chr17:80054871-80055127(-)$1	1	27	65	14.8443
(.(((((.(((((((.(((....))).)))))))))))	chr19:1415361-1415683(+)$1	1	168	206	12.8113
)((((((.(((..((((((....))).)))))).))))	chr19:15513034-15513288(-)$1	1	39	77	12.8409
((((.(((((((.((((......))))))))))).)))	chr17:34151015-34151306(+)$1	1	22	60	13.4530
((.(((((((((((..(((....))).)))))))))))	chr8:142425791-142426052(+)$1	1	129	167	18.0452
(((((((((..((((((......))))))...))))))	chr2:97559889-97560144(-)$1	1	113	151	14.4566
))))((((((((((((..(....)..)))))))))).)	chr6:42750823-42751104(+)$1	1	62	100	15.5137
((..((((((((((((.........).)))))))))))	chr5:1330825-1331156(-)$1	1	145	183	15.8802
(((..(((.((((((((......))).))))).)))..	chr7:1893066-1893319(-)$1	1	72	110	13.2608
((((((((((..((.(((....))).)).)).))))))	chr12:123873634-123873942(+)$1	1	6	44	14.4312
(((..(((..(((((((.(......).))))))).)))	chrX:152958321-152958591(+)$1	1	47	85	14.1985
(..(((.(((.(((((((.....)))))))))).))).	chr9:100745972-100746217(+)$1	1	72	110	14.7146
((((((...(((((.(((.....))).)))))...)))	chr22:49925215-49925496(-)$1	1	135	173	13.5860
((..(((..(((.(.(((....)))).))))))..)))	chr22:50879387-50879627(+)$1	1	191	229	14.2329
((....(((((.(((.(.....)))).).))))...))	chr16:30078597-30078876(+)$1	1	203	241	12.9165
(((((((((..((((((......))))))...))))))	chr2:97559944-97560187(-)$1	1	156	194	14.4566
((((((((...((.((((....)))).)))))))))))	chr4:53428-53695(+)$1	1	22	60	15.3006
(((((((((...((((((......))))))))))))))	chr5:134240832-134241107(+)$1	1	176	214	16.1882
(((((((((((.((.((......)).))..))))))))	chr6:134274586-134274865(+)$1	1	173	211	16.9447
(.((((((..((((((((.....))).))))).)))))	chr6:29595630-29595898(-)$1	1	156	194	12.8524
)))))(((((((((((((.....)))))))))))))..	chr11:82868995-82869240(+)$1	1	33	71	15.5897
)))))))(((...(.((((.....)).)).)....)))	chr12:69633389-69633671(+)$1	1	72	110	13.4796
(((((((((((((..(.....)..))))))))))).))	chr1:178995241-178995591(+)$1	1	1	39	15.7592
)))(((..(((.(((.(((....))).))))))..)))	chr1:211433453-211433776(+)$1	1	209	247	13.0545
(((((((((((.((.(((...)))..)).)))))))))	chr10:79685723-79686055(-)$1	1	217	255	16.9776
(.(((.(((...((.(((.....))).))...))).))	chr7:99755806-99756075(-)$1	1	60	98	16.0518
.(((((((((...((.((....)))).)))))))))))	chr5:90676140-90676420(-)$1	1	94	132	14.8531
..(((.(((((...((((......)))).))))).)))	chr16:88520229-88520493(+)$1	1	108	146	11.9484
(((((((((((.((((((.....)))))).))))))).	chr5:134734474-134734758(-)$1	1	83	121	14.0453
(((.(((...((((.(((.....)))))))))).))))	chr2:132268861-132269084(+)$1	1	65	103	13.2488
(.((((((((((((...(((...)))...))))))).)	chr2:68478852-68479151(-)$1	1	87	125	13.6900
.(((((((((((((.((((..((((.(..(((((((((	chr9:139560088-139560350(+)$1	1	133	171	14.4629
.((..(((....(((.((.....))..)))...)))..	chr1:2160042-2160342(+)$1	1	145	183	13.8244
.((.(.(.((((((((((...)))))))))).).).))	chr1:22379669-22379925(+)$1	1	53	91	15.0293
((((((((((((.(..(......)..))))))))))).	chr16:70472652-70472936(-)$1	1	131	169	18.4129
))(((((((((.(((((......)))))...)))))))	chr16:21512869-21513175(-)$1	1	238	276	15.9831
(((((((((((.((.(((.....)))))))))))))))	chr1:167190918-167191244(+)$1	1	224	262	19.0917
)(((((((((((.(.(((.....))).).)))))))))	chr11:78128121-78128387(-)$1	1	28	66	20.1993
((((...(((((((.(((.....))))))))))...))	chr21:45284977-45285225(+)$1	1	30	68	15.7879
))).(((((((...((((.....))))....)))))))	chr21:46912926-46913178(+)$1	1	34	72	14.3619
(((((((((((...((((((...)))....)))....)	chr19:798049-798287(+)$1	1	147	185	16.6758
((((((((.(..(((.((.....)).)))..).)))))	chr7:5462134-5462432(-)$1	1	146	184	15.9913
(((((((.((.(((((((...))))))).)).))))))	chr11:64073164-64073444(+)$1	1	162	200	14.8167
((((((..(((....((((...))))....))).))))	chr7:65338726-65339042(+)$1	1	6	44	14.1559
((((((((((..(((((......))))).)))))))))	chr21:35446117-35446525(+)$1	1	116	154	17.3473
((((((.(.((.((((((.....)))))).))))))))	chr14:102228168-102228494(+)$1	1	245	283	14.8955
((((((((((((((((.(......))))))))))....	chr19:10914271-10914581(+)$1	1	32	70	14.2318
(((((..((.(..(((((...))))).)))))))))))	chr3:128216782-128217040(+)$1	1	49	87	13.6742
((((((((...(((.((((...)))))))...))))))	chr2:85766512-85766736(+)$1	1	120	158	15.6726
((((..(((.(((.(.(((....))).).))).)))..	chr18:9914605-9914926(+)$1	1	87	125	13.1886
((((((((((((.(.(((.....)))..).))))))))	chr17:73823576-73823859(-)$1	1	81	119	19.4828
((....(((((((((.(((....))).)))))))))..	chr19:4066001-4066252(-)$1	1	157	195	15.8835
((.(((.((((((...(......)...))))))..)))	chr6:15248571-15248828(+)$1	1	2	40	12.8633

#PSSM
= : 0.18	e : 0.16	g : 0.12	f : 0.09	d : 0.09	i : 0.09	[ : 0.07	b : 0.03	h : 0.03	c : 0.03	F : 0.01	: : 0.01	" : 0.01	
= : 0.24	g : 0.11	i : 0.11	d : 0.09	e : 0.09	[ : 0.07	f : 0.07	b : 0.07	h : 0.03	: : 0.01	! : 0.01	c : 0.01	" : 0.01	a : 0.01	
= : 0.29	i : 0.12	g : 0.11	e : 0.09	f : 0.09	! : 0.05	b : 0.05	[ : 0.03	h : 0.03	# : 0.03	c : 0.03	d : 0.01	
= : 0.29	i : 0.12	g : 0.11	! : 0.09	c : 0.09	e : 0.07	f : 0.07	h : 0.03	# : 0.03	[ : 0.03	: : 0.01	
= : 0.31	g : 0.12	i : 0.12	c : 0.12	! : 0.07	f : 0.05	e : 0.03	# : 0.03	[ : 0.01	b : 0.01	h : 0.01	a : 0.01	" : 0.01	
= : 0.33	g : 0.14	c : 0.14	i : 0.11	[ : 0.05	e : 0.03	f : 0.03	# : 0.03	! : 0.03	b : 0.01	h : 0.01	" : 0.01	
= : 0.33	g : 0.12	c : 0.12	i : 0.12	e : 0.05	[ : 0.05	! : 0.05	f : 0.03	" : 0.03	d : 0.01	a : 0.01	
= : 0.31	i : 0.14	g : 0.12	c : 0.12	[ : 0.07	! : 0.05	" : 0.03	f : 0.03	d : 0.01	e : 0.01	a : 0.01	b : 0.01	
= : 0.31	g : 0.14	c : 0.12	i : 0.09	" : 0.07	[ : 0.05	b : 0.05	! : 0.05	d : 0.01	e : 0.01	# : 0.01	f : 0.01	
= : 0.31	g : 0.11	c : 0.11	" : 0.09	! : 0.07	i : 0.07	e : 0.05	b : 0.05	[ : 0.03	d : 0.01	# : 0.01	a : 0.01	f : 0.01	
= : 0.29	g : 0.12	" : 0.11	c : 0.09	! : 0.09	e : 0.07	i : 0.05	[ : 0.03	a : 0.03	d : 0.01	# : 0.01	b : 0.01	f : 0.01	
= : 0.22	[ : 0.14	g : 0.12	" : 0.12	! : 0.09	f : 0.05	e : 0.05	c : 0.05	# : 0.03	i : 0.03	b : 0.01	d : 0.01	
= : 0.12	" : 0.11	g : 0.11	f : 0.11	b : 0.11	c : 0.11	[ : 0.09	e : 0.09	# : 0.03	! : 0.03	i : 0.03	d : 0.01	
g : 0.11	c : 0.11	e : 0.11	b : 0.11	a : 0.11	" : 0.09	= : 0.09	f : 0.09	# : 0.03	d : 0.03	[ : 0.03	i : 0.03	! : 0.01	
[ : 0.25	c : 0.12	f : 0.09	g : 0.07	d : 0.07	= : 0.07	e : 0.07	" : 0.05	! : 0.05	# : 0.03	i : 0.03	b : 0.01	a : 0.01	
c : 0.27	[ : 0.14	d : 0.12	f : 0.09	= : 0.05	g : 0.05	e : 0.05	! : 0.03	a : 0.03	b : 0.03	" : 0.03	# : 0.01	i : 0.01	
c : 0.37	d : 0.12	b : 0.11	f : 0.09	g : 0.05	a : 0.05	e : 0.05	= : 0.03	! : 0.01	r : 0.01	n : 0.01	" : 0.01	[ : 0.01	
c : 0.37	o : 0.16	d : 0.11	b : 0.09	f : 0.05	g : 0.03	n : 0.03	= : 0.03	! : 0.01	r : 0.01	[ : 0.01	a : 0.01	e : 0.01	
n : 0.33	o : 0.22	c : 0.14	m : 0.07	l : 0.07	d : 0.05	a : 0.05	r : 0.01	b : 0.01	
n : 0.35	o : 0.24	m : 0.20	l : 0.12	c : 0.03	r : 0.01	! : 0.01	
n : 0.35	o : 0.24	m : 0.20	l : 0.16	r : 0.01	! : 0.01	
n : 0.33	o : 0.24	m : 0.20	l : 0.09	r : 0.01	a : 0.01	c : 0.01	d : 0.01	= : 0.01	g : 0.01	e : 0.01	
n : 0.31	o : 0.24	m : 0.12	d : 0.09	c : 0.05	l : 0.03	r : 0.01	a : 0.01	2 : 0.01	b : 0.01	= : 0.01	g : 0.01	e : 0.01	
c : 0.38	d : 0.12	b : 0.09	f : 0.07	o : 0.07	a : 0.05	e : 0.05	g : 0.03	= : 0.03	r : 0.01	n : 0.01	2 : 0.01	
c : 0.37	d : 0.14	b : 0.11	f : 0.09	2 : 0.05	= : 0.05	e : 0.05	g : 0.03	r : 0.01	o : 0.01	a : 0.01	3 : 0.01	
c : 0.33	d : 0.12	2 : 0.09	f : 0.09	a : 0.05	] : 0.05	= : 0.05	e : 0.05	g : 0.03	b : 0.03	[ : 0.01	i : 0.01	3 : 0.01	
] : 0.37	f : 0.09	d : 0.07	= : 0.07	b : 0.07	2 : 0.05	g : 0.05	3 : 0.03	a : 0.03	e : 0.03	4 : 0.03	c : 0.03	i : 0.01	
= : 0.16	b : 0.12	g : 0.11	c : 0.11	f : 0.11	e : 0.09	a : 0.07	i : 0.05	4 : 0.05	d : 0.03	3 : 0.01	! : 0.01	2 : 0.01	
= : 0.18	] : 0.14	c : 0.11	f : 0.11	g : 0.09	b : 0.07	e : 0.05	i : 0.05	4 : 0.05	3 : 0.03	2 : 0.01	d : 0.01	! : 0.01	a : 0.01	
= : 0.27	g : 0.11	c : 0.09	3 : 0.09	e : 0.07	] : 0.07	b : 0.05	i : 0.05	4 : 0.05	d : 0.03	f : 0.03	2 : 0.03	
= : 0.31	c : 0.14	g : 0.11	3 : 0.11	i : 0.09	e : 0.07	b : 0.05	d : 0.01	a : 0.01	4 : 0.01	2 : 0.01	f : 0.01	
= : 0.29	c : 0.14	g : 0.12	i : 0.11	3 : 0.09	e : 0.07	] : 0.05	d : 0.01	4 : 0.01	a : 0.01	b : 0.01	f : 0.01	
= : 0.31	g : 0.16	c : 0.14	i : 0.14	] : 0.07	3 : 0.03	a : 0.03	d : 0.01	4 : 0.01	e : 0.01	f : 0.01	
= : 0.33	i : 0.16	g : 0.14	] : 0.09	c : 0.07	3 : 0.05	2 : 0.05	4 : 0.03	f : 0.01	e : 0.01	
= : 0.33	i : 0.14	g : 0.11	c : 0.09	f : 0.05	] : 0.05	3 : 0.05	2 : 0.05	4 : 0.03	e : 0.01	a : 0.01	6 : 0.01	
= : 0.31	c : 0.16	i : 0.14	g : 0.12	f : 0.07	] : 0.05	3 : 0.03	e : 0.01	h : 0.01	4 : 0.01	6 : 0.01	
= : 0.27	c : 0.16	g : 0.11	i : 0.11	f : 0.07	2 : 0.07	e : 0.05	] : 0.03	h : 0.01	: : 0.01	b : 0.01	4 : 0.01	6 : 0.01	
= : 0.25	c : 0.14	i : 0.11	g : 0.09	e : 0.07	f : 0.07	2 : 0.07	: : 0.03	b : 0.03	] : 0.03	3 : 0.01	h : 0.01	6 : 0.01	

#score	812.9778415608315
#seq	54
#width	38
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF851FUY_XRN2_UTR_m2_run1.txt

#BEAR
eeeee####ccc[ammmma]ccc333eeee	chr17:46698461-46698712(-)$1	251	100	130	10.4269
[ccc[bb[bb[cccmmmmcccbbbb]ccce	chr7:25164631-25164914(-)$1	283	175	205	10.3281
ggggg[dddd!!ccclllccc]dddd]ggg	chr5:179248034-179248279(+)$1	245	183	213	11.6716
[iiiiiiiii!!ccclllccc22iiiiiii	chr7:5569457-5569690(-)$1	233	151	181	13.8671
fffff[eeeee[ccclllccceeeee]fff	chr3:184032986-184033288(+)$1	302	210	240	10.0431
cc[a[eeeee[cccmmmmccc]eeeee]a2	chr15:93426515-93426778(+)$1	263	143	173	12.2169
[ffffffa[cccbbmmmmbb]ccc]a]fff	chr17:7477039-7477337(+)$1	298	162	192	10.3002
ffgggggggcccbbnnnnnbb]ccc]gggg	chr1:36851270-36851581(-)$1	311	134	164	10.0554
[dddd"""ccc[ammmma]ccc22dddda]	chr1:245026246-245026527(-)$1	281	151	181	9.5489
d[ggggggg!!bboooooobb]ggggggg]	chr16:89354263-89354589(-)$1	326	94	124	11.3903
=========ddddmmmmdddd22=======	chr2:114648057-114648346(+)$1	289	13	43	10.4128
ccccc!!ccc[cccmmmmccc]ccc22ccc	chr11:61732264-61732513(-)$1	249	216	246	12.7624
c[============lll============]	chr7:925015-925275(+)$1	260	152	182	12.3005
fffff[a$$$$$bbmmmmbb333a]fffff	chr14:103800949-103801248(+)$1	299	200	230	10.8207
ffffffffff[cccmmmmccc333ffffff	chr19:5609951-5610250(-)$1	299	170	200	12.2733
ee[ggggggg"""bbmmmmbb22ggggggg	chr10:88853738-88853989(-)$1	251	175	205	11.3838
::gggggggcccooooooccc22ggggggg	chr8:103424513-103424793(-)$1	280	204	234	10.5959
[iiiiiiiii!!ccclllccc22iiiiiii	chr7:5569385-5569640(-)$1	255	101	131	13.8671
fffff[eeeee[ccclllccceeeee]fff	chr3:184033088-184033360(+)$1	272	108	138	10.0431
eeee[dddd[cccnnnnnccc22dddd]ee	chr8:52811346-52811688(-)$1	342	248	278	9.8959
iieeeee[ccc[bbmmmmbbccc]eeeee]	chr21:46494365-46494622(+)$1	257	61	91	10.5905
ffhhhhhhhh[cccmmmmccc]hhhhhhhh	chr2:145274901-145275127(-)$1	226	78	108	10.8713
:ccc[iiiiiiiiimmmmiiiiiiiiiccc	chr5:137910742-137911006(-)$1	264	232	262	10.9625
cccccc[bb[cccnnnnnccc22bb]ccc]	chr12:131356938-131357221(+)$1	283	201	231	10.6030
e$$$$$ccc[cccooooooccc]ccc22ee	chr2:97535518-97535839(-)$1	321	117	147	9.0566
ff:ggggggg[cccmmmmcccgggggggEE	chr4:38666228-38666555(+)$1	327	172	202	9.6564
cc[bb[bb"""cccmmmmccc333bb]bb]	chr19:1009912-1010132(-)$1	220	40	70	12.4034
dggggggg"""cccmmmmccc333gggggg	chr1:2160042-2160342(+)$1	300	29	59	14.5232
dddggggggg!!bbmmmmbb4444gggggg	chr7:150777753-150777965(-)$1	212	63	93	12.0935
d[eeeee####cccmmmmccc22eeeee]d	chr8:101963424-101963674(-)$1	250	93	123	12.4565
cc!!cccccc[cccmmmmcccccc22ccc2	chr5:137910666-137910938(-)$1	272	158	188	12.0890
%a[===========lll===========]a	chr20:57467329-57467610(+)$1	281	188	218	11.1960
eeee[bb[ccccccmmmmccc]cccbb]ee	chr13:50571196-50571539(+)$1	343	12	42	11.4241
cc[bb[bb"""cccmmmmccc333bb]bb]	chr19:1009932-1010148(-)$1	216	56	86	12.4034
eee[===========lll===========e	chr17:27074029-27074261(+)$1	232	80	110	11.9153
cc[ccc[ccc[bboooooobbccc22ccc2	chr1:109825437-109825758(-)$1	321	185	215	9.6041
dd!!ccc[ccc[a[ammmmaa]ccc]cccd	chr2:242255384-242255645(+)$1	261	207	237	10.4096
ffffff[ddddcccmmmmccc]ddddffff	chr2:232574432-232574666(+)$1	234	23	53	10.7663
iiiiidddd"""bbmmmmbb333dddd]ii	chr10:62538305-62538602(+)$1	297	207	237	11.5377
ggggggg[ccccccmmmmccc22cccgggg	chr8:146017439-146017698(-)$1	259	115	145	13.9974
dddd[eeeee!!ccclllccc22eeeee22	chr7:77166712-77166972(+)$1	260	201	231	11.0871
cc[ffffff!!cccmmmmccc]ffffffcc	chr7:6523217-6523489(-)$1	272	90	120	12.0769
hhhh==========mmmm==========::	chr17:62501825-62502080(-)$1	255	115	145	10.0880
a[hhhhhhhh!!ccclllccc]hhhhhhhh	chr17:79875943-79876195(-)$1	252	206	236	10.2624
hhhhhh!!a!!cccmmmmccc22a]hhhhh	chr11:6518953-6519237(+)$1	284	198	228	12.4572
e!!eeeee[cccooooooccc]eeeee333	chr19:18548018-18548292(-)$1	274	127	157	10.7072
eee"""ccc[a[bbmmmmbb]a]ccc333e	chr3:182511332-182511596(+)$1	264	187	217	10.8152
:ccc!!ffffffccclllccc22ffffff2	chr7:111202228-111202582(-)$1	354	318	348	10.1287
fffdddd!!cccooooooccc22dddd333	chr15:72564495-72564958(-)$1	463	251	281	10.7915
Dggggggg!!cccnnnnnccc22ggggggg	chr11:116968845-116969119(-)$1	274	197	227	11.3108

#otherMatches

#Seq PSSM
GGAGUGGGGAGGGCGAGGGGCCUAGAGCUC	chr17:46698461-46698712(-)$1	251	100	130	10.4269
AGCGGGGAGCAUUCGAGUGGAGCCCGCGCU	chr7:25164631-25164914(-)$1	283	175	205	10.3281
CCUUCUCGGCGACGCCUGGCGGGCCGUGAG	chr5:179248034-179248279(+)$1	245	183	213	11.6716
GAACCGGGCGGAGGCGGGGCUGGCGCCCGG	chr7:5569457-5569690(-)$1	233	151	181	13.8671
CCAGCGAGACCUGGAAUUUCCGGUCUGGUU	chr3:184032986-184033288(+)$1	302	210	240	10.0431
AGGUGGGCGGGGGGCAGCCUCGUCGCCGGG	chr15:93426515-93426778(+)$1	263	143	173	12.2169
GACUUCCAGCGCGCUGGUGCUGCGGUGGGA	chr17:7477039-7477337(+)$1	298	162	192	10.3002
UGGGAGGCGGCGGUGAGAGGCUCGCACGCC	chr1:36851270-36851581(-)$1	311	134	164	10.0554
agcgcgggcccgcgggggaggggagcgccg	chr1:245026246-245026527(-)$1	281	151	181	9.5489
GGCCAUUGUGGCCGGCCCAGGAGCAGUGGG	chr16:89354263-89354589(-)$1	326	94	124	11.3903
CCUCGUUUCUCCCUCCUGGGACUGGGGCGG	chr2:114648057-114648346(+)$1	289	13	43	10.4128
CACGUGACCAACUUGCGCAAGAUGGGAGCG	chr11:61732264-61732513(-)$1	249	216	246	12.7624
AGACCCUUCCCUCCCGUGGGGGGAGGGGUG	chr7:925015-925275(+)$1	260	152	182	12.3005
ACUCAGGCUUCAGCUGCUGCAUUUGUGAGU	chr14:103800949-103801248(+)$1	299	200	230	10.8207
AACCUGUGGGUCAGCGGGCUGUCCUCCACA	chr19:5609951-5610250(-)$1	299	170	200	12.2733
GCUGCACCGGUCUCCUUUUGGUCCCGGUGU	chr10:88853738-88853989(-)$1	251	175	205	11.3838
UUGCUUCCCUCCAUUUGGGGACUGGGAGGC	chr8:103424513-103424793(-)$1	280	204	234	10.5959
GAACCGGGCGGAGGCGGGGCUGGCGCCCGG	chr7:5569385-5569640(-)$1	255	101	131	13.8671
CCAGCGAGACCUGGAAUUUCCGGUCUGGUU	chr3:184033088-184033360(+)$1	272	108	138	10.0431
GCGUGCUAGGGCCGGGCGGGCGACUGGGAU	chr8:52811346-52811688(-)$1	342	248	278	9.8959
ccucggcgugcgcgcgcccggcgggccggc	chr21:46494365-46494622(+)$1	257	61	91	10.5905
cggcccgcgcgcgUUUCAAUGGGCGCGGGC	chr2:145274901-145275127(-)$1	226	78	108	10.8713
CGGGUCAAGAUUUUGCCCAAGGUUUUGCCU	chr5:137910742-137911006(-)$1	264	232	262	10.9625
UGGCUGCGCAGGGAGAGCCCCAGGUCCAGU	chr12:131356938-131357221(+)$1	283	201	231	10.6030
cggagggcuggcgggcgagcgcgggcaggc	chr2:97535518-97535839(-)$1	321	117	147	9.0566
gggcgggggcUCACCUGUGUGGUCCCCGGC	chr4:38666228-38666555(+)$1	327	172	202	9.6564
GAGGGGUCUUGGUAGGUCUGCAGUGAACCG	chr19:1009912-1010132(-)$1	220	40	70	12.4034
UCGGCCGUGAGCcggcggcggggggcggcc	chr1:2160042-2160342(+)$1	300	29	59	14.5232
GCGGCUAUCUAGGGGCUGCUGGGAAGAUGG	chr7:150777753-150777965(-)$1	212	63	93	12.0935
caccccgggaggcgguggcgcggcggggag	chr8:101963424-101963674(-)$1	250	93	123	12.4565
CGCUGCCGGGUCAAGAUUUUGCCCAAGGUU	chr5:137910666-137910938(-)$1	272	158	188	12.0890
GUGGGGGGGCUGGUGACAUCAGCCCCUCGG	chr20:57467329-57467610(+)$1	281	188	218	11.1960
CCGUGCGGUCCCUGUAGUUGGAGGACGGGC	chr13:50571196-50571539(+)$1	343	12	42	11.4241
GAGGGGUCUUGGUAGGUCUGCAGUGAACCG	chr19:1009932-1010148(-)$1	216	56	86	12.4034
UCAUCUAGGCUGGUUGGGAACCGGUCUGGU	chr17:27074029-27074261(+)$1	232	80	110	11.9153
GAGGCCAGGAUGCAGGGCGGCUCCAGGGCA	chr1:109825437-109825758(-)$1	321	185	215	9.6041
CCUAGUGCCGGCGACAGUGGCUCCGACACG	chr2:242255384-242255645(+)$1	261	207	237	10.4096
AGCGUCUCCGCCCUUGGCGGGAGCGGGGCG	chr2:232574432-232574666(+)$1	234	23	53	10.7663
GCUGGCUUUAGAGGGAGGCUAUGGGAGCCC	chr10:62538305-62538602(+)$1	297	207	237	11.5377
GCCGGGCUGGCGGGGGUACCCGGGCCGCCC	chr8:146017439-146017698(-)$1	259	115	145	13.9974
GAAGAGUCCUGACCACAAUGGGGAGGACAA	chr7:77166712-77166972(+)$1	260	201	231	11.0871
CGCGGGACCCCGCUCUGCAGUCGGUCCCCG	chr7:6523217-6523489(-)$1	272	90	120	12.0769
UCGGGGCGGCUGCCAUUUGGUAGCUGUUGA	chr17:62501825-62502080(-)$1	255	115	145	10.0880
AGCCGCUCCGAGCGCAAAGCGGCGGAGCGG	chr17:79875943-79876195(-)$1	252	206	236	10.2624
CCUUACCAGAGUCUUUGGGGAAGCAGUAGG	chr11:6518953-6519237(+)$1	284	198	228	12.4572
CAGGCGGACCCCGUGGAAGGGUUUCGCGAG	chr19:18548018-18548292(-)$1	274	127	157	10.7072
gcgggACCCGGACGGCGACGACGGGGGAAU	chr3:182511332-182511596(+)$1	264	187	217	10.8152
CCUCUUCUUGGUGCCACUGGCUAACUAGGU	chr7:111202228-111202582(-)$1	354	318	348	10.1287
GAGGGCCCCUCCUAGGCUGGACAGGCUUCA	chr15:72564495-72564958(-)$1	463	251	281	10.7915
CACCAUCGGCAAGGGCAACUUCGCGGUGGU	chr11:116968845-116969119(-)$1	274	197	227	11.3108

#DB
(((((....(((.(....).)))...))))	chr17:46698461-46698712(-)$1	1	100	130	10.4269
.(((.((.((.(((....))))))).))))	chr7:25164631-25164914(-)$1	1	175	205	10.3281
(((((.((((..(((...))).)))).)))	chr5:179248034-179248279(+)$1	1	183	213	11.6716
.(((((((((..(((...)))..)))))))	chr7:5569457-5569690(-)$1	1	151	181	13.8671
(((((.(((((.(((...)))))))).)))	chr3:184032986-184033288(+)$1	1	210	240	10.0431
((.(.(((((.(((....))).))))).).	chr15:93426515-93426778(+)$1	1	143	173	12.2169
.(((((((.(((((....)).))).).)))	chr17:7477039-7477337(+)$1	1	162	192	10.3002
))((((((((((((.....)).))).))))	chr1:36851270-36851581(-)$1	1	134	164	10.0554
.((((...(((.(....).)))..))))).	chr1:245026246-245026527(-)$1	1	151	181	9.5489
(.(((((((..((......)).))))))).	chr16:89354263-89354589(-)$1	1	94	124	11.3903
(((((((((((((....))))..)))))))	chr2:114648057-114648346(+)$1	1	13	43	10.4128
))(((..(((.(((....))).)))..)))	chr11:61732264-61732513(-)$1	1	216	246	12.7624
(.((((((((((((...)))))))))))).	chr7:925015-925275(+)$1	1	152	182	12.3005
(((((.(.....((....))...).)))))	chr14:103800949-103801248(+)$1	1	200	230	10.8207
))))((((((.(((....)))...))))))	chr19:5609951-5610250(-)$1	1	170	200	12.2733
((.(((((((...((....))..)))))))	chr10:88853738-88853989(-)$1	1	175	205	11.3838
..((((((((((......)))..)))))))	chr8:103424513-103424793(-)$1	1	204	234	10.5959
.(((((((((..(((...)))..)))))))	chr7:5569385-5569640(-)$1	1	101	131	13.8671
(((((.(((((.(((...)))))))).)))	chr3:184033088-184033360(+)$1	1	108	138	10.0431
((((.((((.(((.....)))..)))).))	chr8:52811346-52811688(-)$1	1	248	278	9.8959
(((((((.(((.((....))))).))))).	chr21:46494365-46494622(+)$1	1	61	91	10.5905
((((((((((.(((....))).))))))))	chr2:145274901-145275127(-)$1	1	78	108	10.8713
.(((.(((((((((....))))))))))))	chr5:137910742-137911006(-)$1	1	232	262	10.9625
((((((.((.(((.....)))..)).))).	chr12:131356938-131357221(+)$1	1	201	231	10.6030
(.....(((.(((......))).)))..))	chr2:97535518-97535839(-)$1	1	117	147	9.0566
)).(((((((.(((....))))))))))))	chr4:38666228-38666555(+)$1	1	172	202	9.6564
((.((.((...(((....)))...)).)).	chr19:1009912-1010132(-)$1	1	40	70	12.4034
((((((((...(((....)))...))))))	chr1:2160042-2160342(+)$1	1	29	59	14.5232
)))(((((((..((....))....))))))	chr7:150777753-150777965(-)$1	1	63	93	12.0935
(.(((((....(((....)))..))))).)	chr8:101963424-101963674(-)$1	1	93	123	12.4565
((..((((((.(((....))))))..))).	chr5:137910666-137910938(-)$1	1	158	188	12.0890
.(.(((((((((((...))))))))))).)	chr20:57467329-57467610(+)$1	1	188	218	11.1960
((((.((.((((((....))).))))).))	chr13:50571196-50571539(+)$1	1	12	42	11.4241
((.((.((...(((....)))...)).)).	chr19:1009932-1010148(-)$1	1	56	86	12.4034
(((.(((((((((((...))))))))))))	chr17:27074029-27074261(+)$1	1	80	110	11.9153
((.(((.(((.((......)))))..))).	chr1:109825437-109825758(-)$1	1	185	215	9.6041
((..(((.(((.(.(....)).))).))))	chr2:242255384-242255645(+)$1	1	207	237	10.4096
((((((.(((((((....))).))))))))	chr2:232574432-232574666(+)$1	1	23	53	10.7663
(((((((((...((....))...)))).))	chr10:62538305-62538602(+)$1	1	207	237	11.5377
(((((((.((((((....)))..)))))))	chr8:146017439-146017698(-)$1	1	115	145	13.9974
((((.(((((..(((...)))..)))))..	chr7:77166712-77166972(+)$1	1	201	231	11.0871
((.((((((..(((....))).))))))))	chr7:6523217-6523489(-)$1	1	90	120	12.0769
))))((((((((((....))))))))))..	chr17:62501825-62502080(-)$1	1	115	145	10.0880
(.((((((((..(((...))).))))))))	chr17:79875943-79876195(-)$1	1	206	236	10.2624
((((((..(..(((....)))..).)))))	chr11:6518953-6519237(+)$1	1	198	228	12.4572
(..(((((.(((......))).)))))...	chr19:18548018-18548292(-)$1	1	127	157	10.7072
(((...(((.(.((....)).).)))...)	chr3:182511332-182511596(+)$1	1	187	217	10.8152
.(((..(((((((((...)))..)))))).	chr7:111202228-111202582(-)$1	1	318	348	10.1287
(((((((..(((......)))..))))...	chr15:72564495-72564958(-)$1	1	251	281	10.7915
)(((((((..(((.....)))..)))))))	chr11:116968845-116969119(-)$1	1	197	227	11.3108

#PSSM
f : 0.18	c : 0.18	e : 0.16	d : 0.12	[ : 0.10	: : 0.06	g : 0.04	i : 0.04	h : 0.04	= : 0.02	% : 0.02	a : 0.02	D : 0.02	
c : 0.21	f : 0.19	e : 0.12	g : 0.08	i : 0.08	d : 0.08	[ : 0.08	h : 0.04	= : 0.02	: : 0.02	$ : 0.02	a : 0.02	! : 0.02	
e : 0.14	g : 0.14	f : 0.14	[ : 0.14	c : 0.10	h : 0.08	i : 0.06	d : 0.06	! : 0.06	= : 0.04	$ : 0.02	: : 0.02	
g : 0.19	f : 0.14	e : 0.12	c : 0.12	h : 0.08	i : 0.06	d : 0.06	= : 0.06	b : 0.04	! : 0.04	a : 0.02	$ : 0.02	[ : 0.02	" : 0.02	
g : 0.19	f : 0.14	[ : 0.12	= : 0.10	c : 0.10	e : 0.08	i : 0.06	h : 0.06	d : 0.04	b : 0.04	$ : 0.02	" : 0.02	! : 0.02	
g : 0.18	[ : 0.12	e : 0.10	= : 0.10	f : 0.08	c : 0.08	i : 0.06	d : 0.06	h : 0.06	b : 0.04	" : 0.04	! : 0.04	# : 0.02	$ : 0.02	
g : 0.18	e : 0.14	= : 0.10	b : 0.08	d : 0.08	f : 0.08	c : 0.08	i : 0.06	[ : 0.06	! : 0.04	h : 0.04	# : 0.02	" : 0.02	a : 0.02	
g : 0.16	[ : 0.10	e : 0.10	= : 0.10	c : 0.10	d : 0.08	i : 0.06	f : 0.06	b : 0.06	# : 0.04	h : 0.04	! : 0.04	a : 0.02	" : 0.02	$ : 0.02	
c : 0.19	g : 0.12	= : 0.10	d : 0.08	e : 0.08	i : 0.06	f : 0.06	" : 0.06	# : 0.04	b : 0.04	[ : 0.04	h : 0.04	! : 0.04	$ : 0.02	a : 0.02	
c : 0.27	e : 0.08	! : 0.08	= : 0.08	[ : 0.08	" : 0.08	d : 0.06	i : 0.06	g : 0.06	f : 0.04	h : 0.04	b : 0.02	$ : 0.02	# : 0.02	
c : 0.30	! : 0.18	[ : 0.16	" : 0.10	= : 0.08	e : 0.04	d : 0.04	$ : 0.02	i : 0.02	# : 0.02	a : 0.02	f : 0.02	
c : 0.52	! : 0.12	[ : 0.12	= : 0.08	b : 0.04	" : 0.04	d : 0.02	$ : 0.02	i : 0.02	f : 0.02	
c : 0.56	b : 0.18	= : 0.08	o : 0.06	a : 0.04	[ : 0.02	d : 0.02	" : 0.02	i : 0.02	
c : 0.48	b : 0.16	o : 0.12	= : 0.08	n : 0.06	m : 0.04	a : 0.02	i : 0.02	[ : 0.02	
m : 0.54	c : 0.16	o : 0.12	n : 0.08	l : 0.04	b : 0.02	= : 0.02	a : 0.02	
m : 0.58	l : 0.21	o : 0.12	n : 0.08	
m : 0.58	l : 0.21	o : 0.12	n : 0.08	
m : 0.54	l : 0.18	o : 0.12	n : 0.08	= : 0.04	a : 0.02	d : 0.02	
c : 0.60	b : 0.12	= : 0.08	o : 0.06	m : 0.04	a : 0.02	n : 0.02	] : 0.02	d : 0.02	i : 0.02	
c : 0.64	b : 0.19	= : 0.08	] : 0.02	d : 0.02	i : 0.02	a : 0.02	
c : 0.68	b : 0.08	= : 0.08	] : 0.04	3 : 0.04	d : 0.02	i : 0.02	4 : 0.02	a : 0.02	
2 : 0.27	] : 0.23	c : 0.14	3 : 0.12	= : 0.08	e : 0.04	b : 0.02	i : 0.02	g : 0.02	4 : 0.02	a : 0.02	
2 : 0.30	c : 0.18	3 : 0.12	e : 0.08	= : 0.08	d : 0.04	g : 0.04	h : 0.04	] : 0.04	b : 0.02	i : 0.02	4 : 0.02	f : 0.02	
c : 0.19	e : 0.12	3 : 0.10	d : 0.10	g : 0.10	= : 0.10	i : 0.06	b : 0.04	a : 0.04	h : 0.04	f : 0.04	2 : 0.02	] : 0.02	4 : 0.02	
e : 0.14	c : 0.14	g : 0.14	d : 0.12	= : 0.10	b : 0.08	i : 0.06	] : 0.06	f : 0.06	h : 0.04	2 : 0.04	3 : 0.02	
e : 0.14	g : 0.14	d : 0.12	= : 0.10	] : 0.08	f : 0.08	i : 0.06	2 : 0.06	h : 0.06	c : 0.06	b : 0.06	3 : 0.02	a : 0.02	
g : 0.18	e : 0.12	] : 0.12	c : 0.10	= : 0.10	f : 0.10	d : 0.08	i : 0.06	h : 0.06	2 : 0.04	b : 0.02	3 : 0.02	
g : 0.19	f : 0.16	c : 0.14	= : 0.10	e : 0.08	] : 0.08	h : 0.06	3 : 0.06	i : 0.04	b : 0.04	d : 0.02	2 : 0.02	
g : 0.18	c : 0.16	f : 0.14	e : 0.10	i : 0.06	= : 0.06	h : 0.06	3 : 0.06	a : 0.04	b : 0.04	] : 0.04	E : 0.02	2 : 0.02	: : 0.02	
g : 0.16	e : 0.14	] : 0.14	f : 0.12	2 : 0.10	i : 0.06	c : 0.06	h : 0.06	d : 0.04	3 : 0.04	= : 0.02	E : 0.02	a : 0.02	: : 0.02	

#score	562.4911137968899
#seq	50
#width	30
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000
#NAME
ENCFF370GDB_ILF3_UTR_m1_run1.txt

#BEAR
:dddd^^^^^^^^^^^^^^^^^^^^dddd::::ff	chr22:22900040-22900318(-)$1	278	122	157	30.8376
'dddd^^^^^^^^^^^^^^^^^^^^^^^dddd444	chr5:141693069-141693405(-)$1	336	137	172	38.8039
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^f	chr22:39414642-39414894(+)$1	252	27	62	42.6987
c[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:122735101-122735364(-)$1	263	95	130	43.6181
hhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:57824484-57824806(-)$1	322	70	105	42.6310
eeeee^^^^^^^^^^^^^^^^^^^^^^eeeee:::	chr19:6494493-6494816(-)$1	323	141	176	35.4802
=====^^^^^^^^^^^^^^^^^^^^^^^^======	chr4:185309156-185309504(-)$1	348	161	196	39.8737
ffff[bb^^^^^^^^^^^^^^^^^^^^bbffffff	chr19:41829443-41829714(+)$1	271	60	95	34.0167
[eeeee^^^^^^^^^^^^^^^^^^^^^^eeeee]f	chr1:145499197-145499478(+)$1	281	151	186	37.5018
eeeee^^^^^^^^^^^^^^^^^^^^^^^^eeeee:	chr19:56671640-56671927(+)$1	287	126	161	38.9982
gggggccc^^^^^^^^^^^^^^^^^^^ccc]gggg	chr20:251510-251775(-)$1	265	227	262	34.1288
hhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^h	chr11:68659357-68659653(-)$1	296	59	94	41.7680
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^eeeee	chr3:196046298-196046557(-)$1	259	89	124	40.4002
fff[ccc^^^^^^^^^^^^^^^^^^^^^ccc]fff	chr22:50683560-50683908(-)$1	348	75	110	36.4766
b!!bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^bb	chr17:29422036-29422320(+)$1	284	90	125	41.5972
edddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:38247673-38248007(+)$1	334	143	178	43.4487
hhhhh^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr2:240898913-240899174(-)$1	261	103	138	42.6310
###bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:35759900-35760167(+)$1	267	18	53	42.6280
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:29679017-29679238(+)$1	221	72	107	43.1980
ddeeeee^^^^^^^^^^^^^^^^^^^eeeee]ddd	chr1:2240876-2241178(+)$1	302	16	51	33.1472
ggggffffff^^^^^^^^^^^^^^^^^^^ffffff	chr22:38008927-38009215(+)$1	288	146	181	31.6332
gggg^^^^^^^^^^^^^^^^^^^^^^^^^^^gggg	chr1:153923955-153924222(-)$1	267	77	112	41.0003
"ddddccc^^^^^^^^^^^^^^^^^^^^ccc]ddd	chr3:10193495-10193832(+)$1	337	78	113	35.2090
bbccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:56592317-56592543(+)$1	226	97	132	43.1449
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^dd	chr1:155260134-155260353(-)$1	219	92	127	42.4632
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr7:917462-917809(+)$1	347	30	65	43.1980
gggggccc^^^^^^^^^^^^^^^^^^^ccc]gggg	chr20:251441-251710(-)$1	269	162	197	34.1288
ccc[ccc^^^^^^^^^^^^^^^^^^^^cccccc22	chr17:47132697-47132938(+)$1	241	46	81	35.6329
iiiii^^^^^^^^^^^^^^^^^^^^^^^^iiiiii	chr1:32833415-32833684(-)$1	269	30	65	39.2065
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr11:203837-204060(-)$1	223	77	112	43.4612
[dddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^dd	chr1:155260089-155260334(-)$1	245	73	108	42.4632
'dddd^^^^^^^^^^^^^^^^^^^^^^^dddd===	chr1:227179468-227179769(-)$1	301	132	167	37.9896
c::dddd^^^^^^^^^^^^^^^^^^^^^^dddd::	chr12:53846038-53846255(+)$1	217	122	157	33.5854
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^ee	chr1:151039909-151040153(+)$1	244	68	103	42.4482
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:56592276-56592517(+)$1	241	130	165	43.1980
bb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr16:58054504-58054850(+)$1	346	84	119	42.4809
ffffff^^^^^^^^^^^^^^^^^^^^^^^ffffff	chr12:54763579-54763845(-)$1	266	110	145	37.7150
eeeeeee^^^^^^^^^^^^^^^^^^^^eeeee:ee	chr12:117288045-117288266(+)$1	221	74	109	34.2841
f[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr19:14203530-14203758(-)$1	228	6	41	43.5920
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:7154809-7155044(-)$1	235	27	62	43.2580
fffff^^^^^^^^^^^^^^^^^^^^^^^^^^ffff	chr16:29680798-29681040(+)$1	242	77	112	40.6449
:dddd^^^^^^^^^^^^^^^^^^ddddccc"""dd	chr11:61580924-61581174(-)$1	250	59	94	30.7528
c[ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:122735164-122735392(-)$1	228	123	158	43.6181
fdddd^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr12:53845903-53846181(+)$1	278	87	122	43.4804
dddd^^^^^^^^^^^^^^^^^^^^^^^^^^dddd:	chr7:100610783-100611138(+)$1	355	267	302	39.3157
+dddd^^^^^^^^^^^^^^^^^^^^dddd>>>>>>	chrX:48549549-48549856(+)$1	307	109	144	34.2699
::ccc^^^^^^^^^^^^^^^^^^^^^ccc::::::	chrX:79927742-79928014(-)$1	272	28	63	30.7988
[ccc^^^^^^^^^^^^^^^^^^^^^^^^^ccc]a]	chr2:97541666-97541893(-)$1	227	15	50	40.2670
cccbb^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr1:205759028-205759303(-)$1	275	87	122	43.0972
ccc:dddd^^^^^^^^^^^^^^^^^^^^^dddddd	chr3:196046357-196046631(-)$1	274	160	195	34.2760
ccc^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chr17:7154844-7155064(-)$1	220	47	82	43.2580
eeeee^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^	chrX:56592343-56592608(+)$1	265	63	98	43.4612
ee[dddd^^^^^^^^^^^^^^^^^^dddd]eeeee	chr12:32260082-32260393(+)$1	311	152	187	31.6621

#otherMatches

#Seq PSSM
cAGUCUUUGAAAACAAGCCCCUCUCGACUCUCUGG	chr22:22900040-22900318(-)$1	278	122	157	30.8376
CCAUCUCACUCCACCCCACUUUGUCCCUGAUGUCU	chr5:141693069-141693405(-)$1	336	137	172	38.8039
CCAGCAUAACCAAAUCUUACUAAACUCAUCCUAgg	chr22:39414642-39414894(+)$1	252	27	62	42.6987
CUAAGccucccuccccuacucccuccuuuccuucc	chrX:122735101-122735364(-)$1	263	95	130	43.6181
uuugguuccccccuuuucuuccccucuccccccuc	chr12:57824484-57824806(-)$1	322	70	105	42.6310
GACUCCAACUUCUCUUUCACCCUCUAUGAGUCCCA	chr19:6494493-6494816(-)$1	323	141	176	35.4802
CCUUCCCUCAAAGCUUCCAUUCCACAUCCGGAGGA	chr4:185309156-185309504(-)$1	348	161	196	39.8737
GGGGACUCUACCCUUCUCAGCCCCACCAGCCCCCC	chr19:41829443-41829714(+)$1	271	60	95	34.0167
CUUCUGAAACCCCUCCUAAGAAACUGCCCAGGGAC	chr1:145499197-145499478(+)$1	281	151	186	37.5018
ucaggucucaccucagccccccccuucucccugau	chr19:56671640-56671927(+)$1	287	126	161	38.9982
AAUCUGCUAUUCCUUUUUUACCAAUAAAGCUGGAU	chr20:251510-251775(-)$1	265	227	262	34.1288
gcgugaacccaccucgcUCCCCUUCUCCACCCUCC	chr11:68659357-68659653(-)$1	296	59	94	41.7680
ACAGCGAUUCGAAAAACAAUAUCCCAgcuggcugu	chr3:196046298-196046557(-)$1	259	89	124	40.4002
GGCACGGAAccccgcccacucccaauccccgcgcc	chr22:50683560-50683908(-)$1	348	75	110	36.4766
cuugccaacgcccccuuucccucucccccucccgc	chr17:29422036-29422320(+)$1	284	90	125	41.5972
UGCUGUCUUCCCCAUCCCUCCAUCCCCACCCCAAC	chr17:38247673-38248007(+)$1	334	143	178	43.4487
UUUUCCUCCCUUCCCUUCCUCCCUGCCUCCUUCCU	chr2:240898913-240899174(-)$1	261	103	138	42.6310
cccggccgcccgcccccuccccucccucccucccc	chr19:35759900-35760167(+)$1	267	18	53	42.6280
gucucaaaaaauaaaaauaaauaaaauaaauaaaa	chr16:29679017-29679238(+)$1	221	72	107	43.1980
UAAAUACUUUUUCCUUUUUCACCGUUGUAUUAUAC	chr1:2240876-2241178(+)$1	302	16	51	33.1472
GCAGGCUGGGGGACACAAAAGAGAACUGACCCAGC	chr22:38008927-38009215(+)$1	288	146	181	31.6332
CAGGACUUCAUUCACCUCUCAGCCACCCAUCCCUG	chr1:153923955-153924222(-)$1	267	77	112	41.0003
cccaucuauacaaaaaauuuuuaaaaauuagcaug	chr3:10193495-10193832(+)$1	337	78	113	35.2090
cccucuuuguuuccuuccuuccuuauuuccuuuag	chrX:56592317-56592543(+)$1	226	97	132	43.1449
UCCUCUCUUCUCUAUUCCUGACCCUCCCUACCUGA	chr1:155260134-155260353(-)$1	219	92	127	42.4632
cccggccucccccuccccuuccucugucuccaccc	chr7:917462-917809(+)$1	347	30	65	43.1980
AAUCUGCUAUUCCUUUUUUACCAAUAAAGCUGGAU	chr20:251441-251710(-)$1	269	162	197	34.1288
CUGUGCUUCUCUCCCUUCUCCCCUCCCAGCCAGCU	chr17:47132697-47132938(+)$1	241	46	81	35.6329
uuuuugaaaaaaaaaaaaaaaGGAAAAAAGAAAAC	chr1:32833415-32833684(-)$1	269	30	65	39.2065
UUGCUCACCCUUCCCCUCCCCUCCUCCUUCCUUCC	chr11:203837-204060(-)$1	223	77	112	43.4612
UCCUCUCUUCUCUAUUCCUGACCCUCCCUACCUGA	chr1:155260089-155260334(-)$1	245	73	108	42.4632
UGCCUUCUCCUCUCUCCCUUCUCUUCUCAGGCAGG	chr1:227179468-227179769(-)$1	301	132	167	37.9896
GUAAGCCUAAAAAUUUCCCUUGCGCCCCCGGCUAU	chr12:53846038-53846255(+)$1	217	122	157	33.5854
AAGACUUCUCUCUCCCAUCACCUUGCCCUCAUUGU	chr1:151039909-151040153(+)$1	244	68	103	42.4482
cacucccucccucuuuguuuccuuccuuccuuauu	chrX:56592276-56592517(+)$1	241	130	165	43.1980
ccucucucucuuccuguccucuaucucuuccccuc	chr16:58054504-58054850(+)$1	346	84	119	42.4809
AGCCCUUCCCCCCAAACCUAGCACAAAACGGGGUU	chr12:54763579-54763845(-)$1	266	110	145	37.7150
uggcuaauuuuuuuuuuuuuuuaauuuuuaguaga	chr12:117288045-117288266(+)$1	221	74	109	34.2841
GACAGAAACACCAGcugcucccccucauccccuuc	chr19:14203530-14203758(-)$1	228	6	41	43.5920
gcuuucccccccuccccuucccuuuucccuuccuc	chr17:7154809-7155044(-)$1	235	27	62	43.2580
AUUUUAAGACUAAAAAGGAAAACAAAAAAAGGAGA	chr16:29680798-29681040(+)$1	242	77	112	40.6449
cugcugauuuguccauuuuauagagcacugauugg	chr11:61580924-61581174(-)$1	250	59	94	30.7528
CUAAGccucccuccccuacucccuccuuuccuucc	chrX:122735164-122735392(-)$1	228	123	158	43.6181
GGGGUCUCUUUCccccuuccuccuccuccuccucc	chr12:53845903-53846181(+)$1	278	87	122	43.4804
GCUCUCAUUCCUUGUAUCCUUUCCCCUUUUGAGCC	chr7:100610783-100611138(+)$1	355	267	302	39.3157
CCAUUUCUUCCCCACCAACCCCUCCAAUGCUGUUA	chrX:48549549-48549856(+)$1	307	109	144	34.2699
UCAGGuuucuuucuuuuuucuuuucuccuuccuuc	chrX:79927742-79928014(-)$1	272	28	63	30.7988
CUGCCACCGCCCCGACCCCUCUCCUCUCUGCAAGA	chr2:97541666-97541893(-)$1	227	15	50	40.2670
UCCCUAAACGACCCUUCCUCACAUUCCCUUCCCUC	chr1:205759028-205759303(-)$1	275	87	122	43.0972
AUGACAGCGAUUCGAAAAACAAUAUCCCAgcuggc	chr3:196046357-196046631(-)$1	274	160	195	34.2760
gcuuucccccccuccccuucccuuuucccuuccuc	chr17:7154844-7155064(-)$1	220	47	82	43.2580
cacucccucccucuuuguuuccuuccuuccuuauu	chrX:56592343-56592608(+)$1	265	63	98	43.4612
UAACCCCCUCCUGCCUCCAUCCACCGGGGCUAUGG	chr12:32260082-32260393(+)$1	311	152	187	31.6621

#DB
.((((....................))))....((	chr22:22900040-22900318(-)$1	1	122	157	30.8376
.((((.......................))))...	chr5:141693069-141693405(-)$1	1	137	172	38.8039
(((((.............................)	chr22:39414642-39414894(+)$1	1	27	62	42.6987
(.(((..............................	chrX:122735101-122735364(-)$1	1	95	130	43.6181
(((((..............................	chr12:57824484-57824806(-)$1	1	70	105	42.6310
(((((......................)))))...	chr19:6494493-6494816(-)$1	1	141	176	35.4802
(((((........................))))))	chr4:185309156-185309504(-)$1	1	161	196	39.8737
((((.((....................))))))))	chr19:41829443-41829714(+)$1	1	60	95	34.0167
.(((((......................))))).)	chr1:145499197-145499478(+)$1	1	151	186	37.5018
(((((........................))))).	chr19:56671640-56671927(+)$1	1	126	161	38.9982
((((((((...................))).))))	chr20:251510-251775(-)$1	1	227	262	34.1288
(((((.............................)	chr11:68659357-68659653(-)$1	1	59	94	41.7680
(((((.........................)))))	chr3:196046298-196046557(-)$1	1	89	124	40.4002
(((.(((.....................))).)))	chr22:50683560-50683908(-)$1	1	75	110	36.4766
(..((............................))	chr17:29422036-29422320(+)$1	1	90	125	41.5972
(((((..............................	chr17:38247673-38248007(+)$1	1	143	178	43.4487
(((((..............................	chr2:240898913-240899174(-)$1	1	103	138	42.6310
...((..............................	chr19:35759900-35760167(+)$1	1	18	53	42.6280
(((((..............................	chr16:29679017-29679238(+)$1	1	72	107	43.1980
(((((((...................))))).)))	chr1:2240876-2241178(+)$1	1	16	51	33.1472
((((((((((...................))))))	chr22:38008927-38009215(+)$1	1	146	181	31.6332
((((...........................))))	chr1:153923955-153924222(-)$1	1	77	112	41.0003
.(((((((....................))).)))	chr3:10193495-10193832(+)$1	1	78	113	35.2090
(((((..............................	chrX:56592317-56592543(+)$1	1	97	132	43.1449
.((((............................))	chr1:155260134-155260353(-)$1	1	92	127	42.4632
(((((..............................	chr7:917462-917809(+)$1	1	30	65	43.1980
((((((((...................))).))))	chr20:251441-251710(-)$1	1	162	197	34.1288
(((.(((....................))))))..	chr17:47132697-47132938(+)$1	1	46	81	35.6329
(((((........................))))))	chr1:32833415-32833684(-)$1	1	30	65	39.2065
(((((..............................	chr11:203837-204060(-)$1	1	77	112	43.4612
.((((............................))	chr1:155260089-155260334(-)$1	1	73	108	42.4632
.((((.......................)))))))	chr1:227179468-227179769(-)$1	1	132	167	37.9896
)..((((......................))))..	chr12:53846038-53846255(+)$1	1	122	157	33.5854
(((((............................))	chr1:151039909-151040153(+)$1	1	68	103	42.4482
(((((..............................	chrX:56592276-56592517(+)$1	1	130	165	43.1980
((.................................	chr16:58054504-58054850(+)$1	1	84	119	42.4809
((((((.......................))))))	chr12:54763579-54763845(-)$1	1	110	145	37.7150
))(((((....................))))).((	chr12:117288045-117288266(+)$1	1	74	109	34.2841
(.(((..............................	chr19:14203530-14203758(-)$1	1	6	41	43.5920
(((................................	chr17:7154809-7155044(-)$1	1	27	62	43.2580
(((((..........................))))	chr16:29680798-29681040(+)$1	1	77	112	40.6449
.((((..................))))(((...((	chr11:61580924-61581174(-)$1	1	59	94	30.7528
(.(((..............................	chrX:122735164-122735392(-)$1	1	123	158	43.6181
(((((..............................	chr12:53845903-53846181(+)$1	1	87	122	43.4804
((((..........................)))).	chr7:100610783-100611138(+)$1	1	267	302	39.3157
.((((....................))))......	chrX:48549549-48549856(+)$1	1	109	144	34.2699
..(((.....................)))......	chrX:79927742-79928014(-)$1	1	28	63	30.7988
.(((.........................))).).	chr2:97541666-97541893(-)$1	1	15	50	40.2670
(((((..............................	chr1:205759028-205759303(-)$1	1	87	122	43.0972
))).((((.....................))))((	chr3:196046357-196046631(-)$1	1	160	195	34.2760
(((................................	chr17:7154844-7155064(-)$1	1	47	82	43.2580
(((((..............................	chrX:56592343-56592608(+)$1	1	63	98	43.4612
((.((((..................)))).)))))	chr12:32260082-32260393(+)$1	1	152	187	31.6621

#PSSM
f : 0.18	e : 0.16	c : 0.15	[ : 0.07	g : 0.07	: : 0.05	h : 0.05	b : 0.05	' : 0.03	d : 0.03	= : 0.01	# : 0.01	" : 0.01	i : 0.01	+ : 0.01	
d : 0.22	e : 0.16	f : 0.15	c : 0.11	g : 0.07	[ : 0.05	h : 0.05	b : 0.03	: : 0.03	= : 0.01	! : 0.01	# : 0.01	i : 0.01	
d : 0.20	c : 0.20	e : 0.16	f : 0.15	g : 0.07	h : 0.05	= : 0.01	! : 0.01	# : 0.01	i : 0.01	: : 0.01	^ : 0.01	[ : 0.01	
d : 0.24	e : 0.16	f : 0.13	c : 0.11	g : 0.07	h : 0.05	b : 0.05	^ : 0.05	[ : 0.03	= : 0.01	i : 0.01	: : 0.01	
d : 0.24	e : 0.16	f : 0.13	c : 0.13	^ : 0.11	h : 0.05	b : 0.05	g : 0.03	= : 0.01	[ : 0.01	i : 0.01	
^ : 0.73	c : 0.09	e : 0.05	d : 0.05	f : 0.03	b : 0.01	
^ : 0.77	c : 0.09	d : 0.05	e : 0.03	b : 0.01	f : 0.01	
^ : 0.90	c : 0.05	f : 0.01	d : 0.01	
^ : 0.98	f : 0.01	
^ : 0.98	f : 0.01	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.99	
^ : 0.98	d : 0.01	
^ : 0.98	d : 0.01	
^ : 0.92	d : 0.07	
^ : 0.88	d : 0.07	e : 0.01	c : 0.01	
^ : 0.77	c : 0.09	d : 0.05	e : 0.05	b : 0.01	
^ : 0.67	c : 0.13	d : 0.09	e : 0.07	b : 0.01	
^ : 0.52	c : 0.13	e : 0.09	d : 0.07	f : 0.05	: : 0.03	= : 0.01	i : 0.01	> : 0.01	] : 0.01	
^ : 0.49	e : 0.13	d : 0.09	c : 0.07	f : 0.05	: : 0.03	] : 0.03	= : 0.01	i : 0.01	" : 0.01	> : 0.01	
^ : 0.45	e : 0.11	d : 0.09	f : 0.07	g : 0.05	] : 0.05	: : 0.03	c : 0.03	= : 0.01	i : 0.01	" : 0.01	> : 0.01	
^ : 0.45	f : 0.09	d : 0.09	: : 0.07	e : 0.07	g : 0.05	= : 0.03	4 : 0.01	c : 0.01	i : 0.01	" : 0.01	> : 0.01	] : 0.01	
^ : 0.37	d : 0.13	f : 0.11	e : 0.09	: : 0.05	g : 0.05	= : 0.03	4 : 0.01	] : 0.01	b : 0.01	2 : 0.01	i : 0.01	> : 0.01	a : 0.01	
^ : 0.33	f : 0.15	d : 0.11	: : 0.09	e : 0.07	g : 0.05	= : 0.03	4 : 0.01	h : 0.01	b : 0.01	2 : 0.01	i : 0.01	> : 0.01	] : 0.01	

#score	2072.880390353616
#seq	53
#width	35
#escape	false
#onStep	15000
#minSteps	10000
#maxSteps	15000